Sequence Length Modifications Modified sequence Carbamidomethyl (C) Probabilities Oxidation (M) Probabilities Carbamidomethyl (C) Score Diffs Oxidation (M) Score Diffs Acetyl (Protein N-term) Carbamidomethyl (C) Oxidation (M) Missed cleavages Proteins Leading proteins Leading razor protein Type Raw file Experiment MS/MS m/z Charge m/z Mass Uncalibrated - Calibrated m/z [ppm] Uncalibrated - Calibrated m/z [Da] Mass error [ppm] Mass error [Da] Uncalibrated mass error [ppm] Uncalibrated mass error [Da] Max intensity m/z 0 Retention time Retention length Calibrated retention time Calibrated retention time start Calibrated retention time finish Retention time calibration Match time difference Match m/z difference Match q-value Match score Number of data points Number of scans Number of isotopic peaks PIF Fraction of total spectrum Base peak fraction PEP MS/MS count MS/MS scan number MS/MS scan numbers MS3 scan numbers Score Delta score Combinatorics Intensity Reverse Potential contaminant id Protein group IDs Peptide ID Mod. peptide ID MS/MS IDs Best MS/MS Carbamidomethyl (C) site IDs Oxidation (M) site IDs Taxonomy IDs Taxonomy names Mass deficit AAAAAAGRIAI 11 Unmodified _AAAAAAGRIAI_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:806325-806721:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN47_class_I_Rep_2 3 478.28729248046875 2 478.287808 954.561064 -0.24184 -0.00011567 -0.23267 -0.00011128 -0.47451 -0.00022695 478.2874219242161 13.068 0.26119 16.456 16.377 16.638 3.388 32 23 2 0 0 0 0.68583 1 254 254 0 0 1 64665 0 772 0 0 0 0 0.08196582399955332 AAAAAEAKKR 10 Unmodified _AAAAAEAKKR_ 0 0 0 REV__ENSG00000247315|ENST00000500893|ZCCHC3 REV__ENSG00000247315|ENST00000500893|ZCCHC3 MSMS UPN48_class_I_Rep_1 5 493.7901611328125 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 34.457 1 37.972 37.472 38.472 3.5144 0 0 0 0.53105 1 5513 5513 1.6526 0.85899 1 + 1 21344 1 1 1 1 0.07351680911654057 AAAAAQSVY 9 Unmodified _AAAAAQSVY_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1 nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN46_class_I_Rep_3 1 426.2166748046875 2 426.216517 850.418482 -0.06923 -2.9507E-05 0.16729 7.13E-05 0.098057 4.1793E-05 426.2165640990504 33.296 0.81925 33.296 33.018 33.838 0 124 65 3 0 0 0 0.074399 1 5786 5786 39.95 10.868 1 273160 2 5682 2 2 2 2 -0.012710500620528364 AAAFPFGRDGH 11 Unmodified _AAAFPFGRDGH_ 0 0 0 REV__nc|ENSG00000182287|P56377-2|AP1S2 REV__nc|ENSG00000182287|P56377-2|AP1S2 MSMS UPN47_class_I_Rep_1 2 573.2798461914062 2 573.277972 1144.54139 NaN NaN NaN NaN NaN NaN NaN 74.825 1 78.219 77.719 78.719 3.3937 0 0 0 0.38417 1 18435 18435 1.1933 0.39971 1 + 3 32077 3 3 3 3 -0.02509793610761335 AAAGPVADLF 10 Unmodified _AAAGPVADLF_ 0 0 0 nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2 nc|ENSG00000169891|Q8NFH8-4|REPS2 nc|ENSG00000169891|Q8NFH8-4|REPS2 MULTI-MSMS UPN46_class_I_Rep_3 1 466.24700927734375 2 466.247818 930.481082 0.18156 8.4652E-05 -0.17615 -8.2131E-05 0.0054081 2.5215E-06 466.24763607576114 69.733 0.62386 69.733 69.491 70.115 0 116 65 3 0 0 0 0.33585 4 15950 15950;15984;16017;16050 25.399 2.663 1 247080 4 4442 4 4 4;5;6;7 4 0.013060960061238802 AAAGRDAVVF 10 Unmodified _AAAGRDAVVF_ 0 0 0 ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR ENSG00000105699|ENST00000605618|LSR ENSG00000105699|ENST00000605618|LSR MSMS UPN46_class_I_Rep_3 1 488.906494140625 2 488.764166 975.513779 NaN NaN NaN NaN NaN NaN NaN 80.101 1 80.101 79.601 80.601 0 0 0 0 0.53105 1 18852 18852 1.8442 0 1 5 1753 5 5 8 8 0.025043031289897044 AAEVPATKRL 10 Unmodified _AAEVPATKRL_ 0 0 0 AluJr_dup52426|chr11:66649349-66649533:+|1.6966708980983147|0.2518017713302168|2.75|151.0|6|2|sense AluJr_dup52426|chr11:66649349-66649533:+|1.6966708980983147|0.2518017713302168|2.75|151.0|6|2|sense AluJr_dup52426|chr11:66649349-66649533:+|1.6966708980983147|0.2518017713302168|2.75|151.0|6|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 528.3139038085938 2 528.314023 1054.61349 0.48721 0.0002574 -0.16428 -8.6793E-05 0.32292 0.0001706 528.3138075386546 89.284 0.35085 93.113 92.96 93.311 3.8293 59 43 2 0 0 0 0.84575 1 21174 21174 0.40072 0 1 105210 6 158 6 6 9 9 0.08837120742964544 AAFPAGFQ 8 Unmodified _AAFPAGFQ_ 0 0 0 nc|ENSG00000183092|Q9BUH8|BEGAIN;ENSG00000183092|ENST00000554140|BEGAIN nc|ENSG00000183092|Q9BUH8|BEGAIN nc|ENSG00000183092|Q9BUH8|BEGAIN MSMS UPN48_class_I_Rep_1 5 404.7037353515625 2 404.703046 807.391539 NaN NaN NaN NaN NaN NaN NaN 99.492 1 103.1 102.6 103.6 3.6065 0 0 0 0.40738 1 24016 24016 0.79363 0 1 7 4983 7 7 10 10 -0.01986113882560403 AAGFDLLVFY 10 Unmodified _AAGFDLLVFY_ 0 0 0 L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.7935791015625 2 558.292225 1114.5699 0.37419 0.00020891 -0.10101 -5.6394E-05 0.27318 0.00015252 558.2920426023031 70.598 1.1109 73.969 73.541 74.651 3.3713 250 105 3 0 0 0 0.46161 7 17066 17056;17066;17103;17260;17297;17319;17363 14.838 14.838 1 553980 8 14731 8 8 11;12;13;14;15;16;17 12 0.017195112458011863 AAGFDLLVFY 10 Unmodified _AAGFDLLVFY_ 0 0 0 L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2920532226562 2 558.292225 1114.5699 0.41602 0.00023226 -0.090797 -5.0691E-05 0.32523 0.00018157 558.2920661035747 70.852 0.94855 74.135 73.739 74.688 3.2828 203 88 3 0 0 0 0.46161 5 17218 17181;17186;17218;17394;17432 14.838 0.93222 1 538720 9 14731 8 8 18;19;20;21;22 20 0.017195112458011863 AAGFDLLVFY 10 Unmodified _AAGFDLLVFY_ 0 0 0 L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|221|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.7945556640625 2 558.292225 1114.5699 0.44665 0.00024936 -0.045417 -2.5356E-05 0.40123 0.00022401 558.2920977973986 70.945 1.0957 74.156 73.715 74.81 3.2113 234 94 3 0 0 0 0.46161 3 17297 17297;17493;17529 14.838 0.93222 1 458270 10 14731 8 8 23;24;25 23 0.017195112458011863 AAGLLQSPSPF 11 Unmodified _AAGLLQSPSPF_ 0 0 0 REV__MLT1D_dup13792|chr11:75295247-75295707:-|1.222746642244923|0.0094879446776844|7.01|151.0|26|2|anti-sense REV__MLT1D_dup13792|chr11:75295247-75295707:-|1.222746642244923|0.0094879446776844|7.01|151.0|26|2|anti-sense MSMS UPN48_class_I_Rep_3 7 544.291015625 2 544.292756 1086.57096 NaN NaN NaN NaN NaN NaN NaN 47.541 1 51.175 50.675 51.675 3.6339 0 0 0 0.38417 1 9340 9340 3.2813 0.54611 1 + 11 31667 9 9 26 26 0.031137256147076187 AAGPARLRRPS 11 Unmodified _AAGPARLRRPS_ 0 0 0 REV__ENST00000232564.7_1_3:179169144-179169282:-|nuORF REV__ENST00000232564.7_1_3:179169144-179169282:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 576.3422241210938 2 576.341438 1150.66832 0.49616 0.00028596 -0.1136 -6.5475E-05 0.38255 0.00022048 576.3411893314752 107.99 0.25129 107.99 107.93 108.18 0 24 16 2 0 0 0 0.31364 1 26422 26422 14.405 2.1647 1 19799000 + 12 21496 10 10 27 27 0.0990155233423593 AAGYKANIHIS 11 Unmodified _AAGYKANIHIS_ 0 0 0 L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|47|2|sense L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|47|2|sense L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|47|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 572.80859375 2 572.809105 1143.60366 0.39141 0.0002242 -0.070293 -4.0264E-05 0.32112 0.00018394 572.8090349243976 46.73 0.73213 50.366 49.99 50.723 3.6363 109 44 3 0 0 0 0.295 1 9008 9008 16.149 4.6544 1 361420 13 11407 11 11 28 28 0.03759932737557392 AAHFPRKM 8 Unmodified _AAHFPRKM_ 0 0 0 AluJb_dup9766|chr1:201958421-201958713:+|1.341979841015648|0.3083989739341213|2.12|151.0|11|3|sense AluJb_dup9766|chr1:201958421-201958713:+|1.341979841015648|0.3083989739341213|2.12|151.0|11|3|sense AluJb_dup9766|chr1:201958421-201958713:+|1.341979841015648|0.3083989739341213|2.12|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 478.7850646972656 2 479.257997 956.501441 NaN NaN NaN NaN NaN NaN NaN 25.764 1 29.112 28.612 29.612 3.3478 0 0 0 0.40738 1 3671 3671 0.79363 0 1 14 84 12 12 29 29 0.021449881849662233 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 478.7452392578125 2 478.745442 955.476331 0.22203 0.00010629 -0.0081643 -3.9086E-06 0.21386 0.00010239 478.7452235310272 47.502 0.44791 47.502 47.199 47.647 0 69 45 2 0 0 0 0.17468 1 9806 9806 23.148 9.2424 1 256690 + 15 5235 13 13 30 30 -0.003187881366102374 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_1 2 478.745361328125 2 478.745442 955.476331 -0.22802 -0.00010916 -0.05258 -2.5173E-05 -0.2806 -0.00013434 478.74537788568847 42.578 0.81244 46.265 46.036 46.849 3.6875 112 58 3 0 0 0 0.17468 3 8682 8643;8682;8725 23.148 9.2424 1 139980 + 16 5235 13 13 31;32;33 32 -0.003187881366102374 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_2 3 478.7452697753906 2 478.745442 955.476331 -0.17262 -8.2639E-05 0.089691 4.2939E-05 -0.082925 -3.97E-05 478.74535378314727 42.925 0.63904 46.287 46.002 46.641 3.3611 74 42 2 0 0 0 0.17468 3 8803 8763;8803;8841 23.148 9.2424 1 151530 + 17 5235 13 13 34;35;36 35 -0.003187881366102374 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_3 4 478.74554443359375 2 478.745442 955.476331 -0.25448 -0.00012183 0.16555 7.9257E-05 -0.088927 -4.2573E-05 478.7454095006201 43.053 0.67828 46.295 46.011 46.689 3.2419 75 44 2 0 0 0 0.11897 3 8902 8862;8902;8949 30.225 14.378 1 139440 + 18 5235 13 13 37;38;39 38 -0.003187881366102374 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 478.7452392578125 2 478.745442 955.476331 0.12332 5.9037E-05 -0.018016 -8.6249E-06 0.1053 5.0412E-05 478.74531372138455 43.091 0.90572 46.601 46.259 47.165 3.5103 160 71 3 0 0 0 0.060667 4 8065 7991;8028;8065;8108 44.407 27.465 1 465100 + 19 5235 13 13 40;41;42;43 42 -0.003187881366102374 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 478.745361328125 2 478.745442 955.476331 0.1614 7.7271E-05 -0.13853 -6.632E-05 0.022875 1.0951E-05 478.7452604203832 42.843 0.88254 46.601 46.225 47.107 3.7579 167 74 3 0 0 0 0.060667 4 7971 7936;7971;8014;8082 44.407 27.465 1 493010 + 20 5235 13 13 44;45;46;47 45 -0.003187881366102374 AAHLPAEFT 9 Unmodified _AAHLPAEFT_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 478.7454528808594 2 478.745442 955.476331 0.13576 6.4993E-05 -0.1371 -6.5637E-05 -0.0013452 -6.4399E-07 478.74528556285225 42.993 0.82801 46.635 46.251 47.079 3.6415 154 67 3 0 0 0 0.066041 4 7922 7882;7922;7961;8007 42.095 27.256 1 524380 + 21 5235 13 13 48;49;50;51 49 -0.003187881366102374 AAHSFGPHHLC 11 Unmodified _AAHSFGPHHLC_ 0 0 0 LTR12_dup705|chr17:9376113-9376878:+|1.754796825796559|0.0302650875349543|5.86|151.0|5|1|sense LTR12_dup705|chr17:9376113-9376878:+|1.754796825796559|0.0302650875349543|5.86|151.0|5|1|sense LTR12_dup705|chr17:9376113-9376878:+|1.754796825796559|0.0302650875349543|5.86|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 588.7694091796875 2 588.772 1175.52945 NaN NaN NaN NaN NaN NaN NaN 38.762 1 42.427 41.927 42.927 3.6652 0 0 0 0.38417 1 7506 7506 2.9952 0.41776 1 22 15530 14 14 52 52 -0.05129733625585686 AAHYVSPPGF 10 Unmodified _AAHYVSPPGF_ 0 0 0 REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP MULTI-MSMS UPN48_class_I_Rep_2 6 523.2587280273438 2 523.258717 1044.50288 0.30684 0.00016056 -0.29254 -0.00015307 0.014302 7.4838E-06 523.2585242866494 44.04 0.86757 47.801 47.465 48.332 3.7617 153 63 3 0 0 0 0.38932 1 8394 8394 20.454 1.0146 1 323190 + 23 32133 15 15 53 53 -0.01759099245282414 AAHYVSPPGF 10 Unmodified _AAHYVSPPGF_ 0 0 0 REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP MULTI-MSMS UPN48_class_I_Rep_3 7 523.2586059570312 2 523.258717 1044.50288 0.33921 0.0001775 -0.27926 -0.00014613 0.059952 3.1371E-05 523.2585426138373 44.201 0.86192 47.839 47.503 48.365 3.6385 123 59 3 0 0 0 0.46161 1 8321 8321 14.838 0.93222 1 291580 + 24 32133 15 15 54 54 -0.01759099245282414 AAIAVHGRKR 10 Unmodified _AAIAVHGRKR_ 0 0 0 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 MSMS UPN48_class_I_Rep_2 6 539.83251953125 2 539.833249 1077.65194 NaN NaN NaN NaN NaN NaN NaN 86.033 1 89.739 89.239 90.239 3.7058 0 0 0 0.53105 1 20481 20481 1.8442 0 1 25 4295 16 16 55 55 0.1162247116810704 AAIPRVVQTAV 11 Unmodified _AAIPRVVQTAV_ 0 0 0 ENST00000303657.9_1_19:5993631-5994159:-|nuORF ENST00000303657.9_1_19:5993631-5994159:-|nuORF ENST00000303657.9_1_19:5993631-5994159:-|nuORF MSMS UPN46_class_I_Rep_3 1 562.84423828125 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.12 1 108.12 107.62 108.62 0 0 0 0 0.28775 1 26415 26415 13.042 1.5478 1 26 6085 17 17 56 56 0.11445382668375714 AAIPRVVQTAV 11 Unmodified _AAIPRVVQTAV_ 0 0 0 ENST00000303657.9_1_19:5993631-5994159:-|nuORF ENST00000303657.9_1_19:5993631-5994159:-|nuORF ENST00000303657.9_1_19:5993631-5994159:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.8436279296875 2 562.842948 1123.67134 0.63496 0.00035738 -0.12204 -6.8687E-05 0.51292 0.00028869 562.842803735732 107.88 0.28848 111.42 111.34 111.63 3.5345 77 34 4 0 0 0 0.295 1 26110 26110 16.149 3.9084 1 26097000 27 6085 17 17 57 57 0.11445382668375714 AAKEWKKKRQR 11 Unmodified _AAKEWKKKRQR_ 0 0 0 REV__ENST00000594808.1_1_19:44006416-44008305:-|nuORF REV__ENST00000594808.1_1_19:44006416-44008305:-|nuORF MSMS UPN48_class_I_Rep_3 7 476.95855712890625 3 476.956393 1427.84735 NaN NaN NaN NaN NaN NaN NaN 105.46 1 109.16 108.66 109.66 3.702 0 0 0 0.38417 1 24887 24887 0.45452 0 1 + 28 21641 18 18 58 58 0.1505401690230883 AAKRLRLD 8 Unmodified _AAKRLRLD_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS UPN47_class_I_Rep_2 3 471.7958679199219 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 82.669 1 86.067 85.567 86.567 3.3984 0 0 0 0.40738 1 20608 20608 0.79363 0 1 29 2508 19 19 59 59 0.10392288636876401 AALAPYPVR 9 Unmodified _AALAPYPVR_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN48_class_I_Rep_1 5 479.2774658203125 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 75.209 1 78.709 78.209 79.209 3.4996 0 0 0 0.35339 1 17807 17807 7.9102 2.6795 1 + 30 21046 20 20 60 60 0.06434081514032641 AALFIMARKV 10 Unmodified _AALFIMARKV_ 0 0 0 L1MB7_dup7209|chr5:180031594-180032347:-|1.6827654995066728|0.0089708594369993|7.55|151.0|31|3|sense L1MB7_dup7209|chr5:180031594-180032347:-|1.6827654995066728|0.0089708594369993|7.55|151.0|31|3|sense L1MB7_dup7209|chr5:180031594-180032347:-|1.6827654995066728|0.0089708594369993|7.55|151.0|31|3|sense MSMS UPN47_class_I_Rep_2 3 560.3410034179688 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 97.788 1 101.27 100.77 101.77 3.4836 0 0 0 0.53105 1 23989 23989 1.8442 1.1539 1 31 10868 21 21 61 61 0.10883532147249753 AALPLLRDRR 10 Unmodified _AALPLLRDRR_ 0 0 0 ENST00000495794.5_1_5:864585-881375:-|nuORF ENST00000495794.5_1_5:864585-881375:-|nuORF ENST00000495794.5_1_5:864585-881375:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 590.8667602539062 2 590.867289 1179.72002 0.51331 0.0003033 -0.07667 -4.5302E-05 0.43664 0.000258 590.8666270968711 95.639 0.28236 99.548 99.506 99.789 3.9084 59 38 2 0 0 0 0.56033 1 22679 22679 3.5965 0 1 481030 32 7096 22 22 62 62 0.13735296028107769 AALPLLRDRR 10 Unmodified _AALPLLRDRR_ 0 0 0 ENST00000495794.5_1_5:864585-881375:-|nuORF ENST00000495794.5_1_5:864585-881375:-|nuORF ENST00000495794.5_1_5:864585-881375:-|nuORF MSMS UPN48_class_I_Rep_3 7 590.8651123046875 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 95.919 1 99.828 99.328 100.33 3.9084 0 0 0 0.53105 1 22734 22734 1.4819 0 1 33 7096 22 22 63 63 0.13735296028107769 AALPRGRA 8 Unmodified _AALPRGRA_ 0 0 0 REV__ENSG00000213906|ENST00000533293|LTB4R2 REV__ENSG00000213906|ENST00000533293|LTB4R2 MSMS UPN47_class_I_Rep_1 2 406.2489929199219 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 80.486 1 83.973 83.473 84.473 3.4874 0 0 0 0.40625 1 20052 20052 2.3027 0 1 + 34 21253 23 23 64 64 0.06959774885558545 AALPRPQLRSV 11 Unmodified _AALPRPQLRSV_ 0 0 0 ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK MSMS UPN48_class_I_Rep_1 5 604.3667602539062 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 101.42 1 105.04 104.54 105.54 3.612 0 0 0 0.38417 1 24485 24485 1.1933 0.59184 1 35 5370 24 24 65 65 0.12459876308253115 AALPRPQLRSV 11 Unmodified _AALPRPQLRSV_ 0 0 0 ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK ENSG00000197417|ENST00000225519|SHPK MSMS UPN48_class_I_Rep_1 5 604.3666381835938 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 102.84 1 106.46 105.96 106.96 3.6164 0 0 0 0.38417 1 24791 24791 1.1933 0.12188 1 36 5370 24 24 66 66 0.12459876308253115 AALPWKRPRG 10 Unmodified _AALPWKRPRG_ 0 0 0 ENST00000358752.3_1_11:94278827-94278965:+|nuORF ENST00000358752.3_1_11:94278827-94278965:+|nuORF ENST00000358752.3_1_11:94278827-94278965:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 576.8455200195312 2 576.343449 1150.67235 0.49616 0.00028596 -3.6035 -0.0020768 -3.1073 -0.0017909 576.3411893314752 107.99 0.25129 107.99 107.93 108.18 0 24 16 2 0 0 0 0.54466 1 26425 26425 6.2058 0.47393 1 19799000 37 6301 25 25 67 67 0.10303641827931642 AALRTRAF 8 Unmodified _AALRTRAF_ 0 0 0 REV__ENSG00000169100|ENST00000381401|SLC25A6 REV__ENSG00000169100|ENST00000381401|SLC25A6 MSMS UPN48_class_I_Rep_1 5 453.282958984375 2 453.269419 904.524284 NaN NaN NaN NaN NaN NaN NaN 102.1 1 105.72 105.22 106.22 3.612 0 0 0 0.40404 1 24630 24630 5.2307 0.47466 1 + 38 17523 26 26 68 68 0.0682033057407807 AAMKNILFGW 10 Unmodified _AAMKNILFGW_ 0 0 0 REV__ENST00000261973.11_1_14:73587139-73587298:+|nuORF REV__ENST00000261973.11_1_14:73587139-73587298:+|nuORF MSMS UPN46_class_I_Rep_3 1 576.2741088867188 2 575.807519 1149.60049 NaN NaN NaN NaN NaN NaN NaN 54.848 1 54.848 54.348 55.348 0 0 0 0 0.53105 1 11896 11896 1.8442 0 1 + 39 21567 27 27 69 69 0.03166966359208345 AANGKLFSR 9 Unmodified _AANGKLFSR_ 0 0 0 ENSG00000135426|ENST00000449076|TESPA1 ENSG00000135426|ENST00000449076|TESPA1 ENSG00000135426|ENST00000449076|TESPA1 MULTI-MSMS UPN46_class_I_Rep_3 1 482.2716979980469 2 482.272158 962.529764 -0.0718 -3.4627E-05 -0.13533 -6.5266E-05 -0.20713 -9.9893E-05 482.27200059433846 26.245 0.86844 26.245 25.804 26.672 0 133 76 2 0 0 0 0.25805 3 3720 3647;3720;3805 16.566 7.1828 1 137810 40 2908 28 28 70;71;72 71 0.04700009365899405 AAPILKLPRD 10 Unmodified _AAPILKLPRD_ 0 0 0 MER21B_dup2166|chr15:49864913-49865760:+|1.47610298572472|0.0249215147387749|5.89|150.0|35|1|anti-sense MER21B_dup2166|chr15:49864913-49865760:+|1.47610298572472|0.0249215147387749|5.89|150.0|35|1|anti-sense MER21B_dup2166|chr15:49864913-49865760:+|1.47610298572472|0.0249215147387749|5.89|150.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3333129882812 2 547.340041 1092.66553 NaN NaN NaN NaN NaN NaN NaN 92.651 1 96.372 95.872 96.872 3.7209 0 0 0 0.53105 1 23078 23078 1.4819 0.79152 1 41 15869 29 29 73 73 0.12290284156711095 AAPIPILPER 10 Unmodified _AAPIPILPER_ 0 0 0 nc|ENSG00000145113|Q99102-13|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4 nc|ENSG00000145113|Q99102-13|MUC4 nc|ENSG00000145113|Q99102-13|MUC4 MSMS UPN48_class_I_Rep_3 7 538.8287353515625 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 92.961 1 96.84 96.34 97.34 3.8782 0 0 0 0.53105 1 22029 22029 1.8442 0 1 42 3383 30 30 74 74 0.1041859526535518 AAPIVRHGRV 10 Unmodified _AAPIVRHGRV_ 0 0 0 REV__nc|ENSG00000069998|Q9BXW7-2|HDHD5 REV__nc|ENSG00000069998|Q9BXW7-2|HDHD5 MULTI-SECPEP UPN48_class_I_Rep_1 5 537.6765747070312 2 538.327799 1074.64105 0.3572 0.00019229 -1.6338 -0.00087953 -1.2766 -0.00068724 538.3265010199298 107.33 0.12534 110.96 110.86 110.99 3.6299 10 8 2 0 0 0 0.84575 1 25845 25845 6.7232 6.7232 1 1209200 + 43 17788 31 31 75 75 0.10671068793840277 AAPLSFKLH 9 Unmodified _AAPLSFKLH_ 0 0 0 REV__MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|37|1|anti-sense REV__MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 492.28680419921875 2 492.287277 982.560001 NaN NaN NaN NaN NaN NaN NaN 89.157 1 89.157 88.657 89.657 0 0 0 0 0.36505 1 21440 21440 7.2892 0 1 + 44 31411 32 32 76 76 0.06802368031083006 AAPLSFKLH 9 Unmodified _AAPLSFKLH_ 0 0 0 REV__MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|37|1|anti-sense REV__MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 492.285400390625 2 492.287277 982.560001 NaN NaN NaN NaN NaN NaN NaN 89.162 1 89.162 88.662 89.662 0 0 0 0 0.36505 1 21442 21442 7.2892 0 1 + 45 31411 32 32 77 77 0.06802368031083006 AAPTAKDKR 9 Unmodified _AAPTAKDKR_ 0 0 0 ENST00000256689.9_1_12:46765075-46766312:-|nuORF ENST00000256689.9_1_12:46765075-46766312:-|nuORF ENST00000256689.9_1_12:46765075-46766312:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 479.27734375 2 479.277441 956.540328 0.12283 5.8869E-05 -0.06466 -3.099E-05 0.058169 2.7879E-05 479.27730486425554 87.69 0.73667 91.309 90.944 91.68 3.6187 207 79 3 0 0 0 0.43153 1 20974 20974 6.2058 6.2058 1 668930 46 5931 33 33 78 78 0.060319920203255606 AAPTAKDKR 9 Unmodified _AAPTAKDKR_ 0 0 0 ENST00000256689.9_1_12:46765075-46766312:-|nuORF ENST00000256689.9_1_12:46765075-46766312:-|nuORF ENST00000256689.9_1_12:46765075-46766312:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 479.277441 956.540328 0.23893 0.00011451 -0.16793 -8.0487E-05 0.070991 3.4025E-05 479.27725044569235 87.629 0.62259 91.42 91.054 91.677 3.7905 0.081639 -3.8794E-05 NaN 6.2058 200 75 3 NaN NaN NaN NaN 0 NaN NaN 0 617460 47 5931 33 33 0.060319920203255606 AAQCLSQQEQ 10 Unmodified _AAQCLSQQEQ_ 0 0 0 ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;nc|ENSG00000164190|Q6KC79-2|NIPBL ENSG00000164190|ENST00000282516|NIPBL ENSG00000164190|ENST00000282516|NIPBL MULTI-MSMS UPN47_class_I_Rep_3 4 553.2517700195312 2 553.250763 1104.48697 0.35202 0.00019476 0.66983 0.00037059 1.0219 0.00056534 553.251108253011 59.592 0.26019 62.757 62.544 62.804 3.1651 22 18 2 0 0 0 0.56354 1 13943 13943 1.3295 1.3295 1 149440 48 4095 34 34 79 79 -0.06109173544518853 AAQGPRRW 8 Unmodified _AAQGPRRW_ 0 0 0 REV__ENST00000541676.5_2_16:84215636-84215878:-|nuORF REV__ENST00000541676.5_2_16:84215636-84215878:-|nuORF MSMS UPN48_class_I_Rep_2 6 471.2547607421875 2 471.256843 940.499132 NaN NaN NaN NaN NaN NaN NaN 25.867 1 29.5 29 30 3.6332 0 0 0 0.40625 1 3209 3209 2.3027 0.24298 1 + 49 22919 35 35 80 80 0.02650275771509314 AARKIKQP 8 Unmodified _AARKIKQP_ 0 0 0 REV__L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|4|1|sense REV__L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 456.3011169433594 2 456.292894 910.571235 NaN NaN NaN NaN NaN NaN NaN 46.09 1 49.61 49.11 50.11 3.5192 0 0 0 0.40625 1 8961 8961 2.3027 0 1 + 50 25214 36 36 81 81 0.11237190125211782 AARKLQLGRAQ 11 Unmodified _AARKLQLGRAQ_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|7|1|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|7|1|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 606.3696899414062 2 606.370195 1210.72584 NaN NaN NaN NaN NaN NaN NaN 84.735 1 88.485 87.985 88.985 3.7494 0 0 0 0.38417 1 20109 20109 1.1933 0.66858 1 51 13503 37 37 82 82 0.12890394539795125 AARRLEDI 8 Unmodified _AARRLEDI_ 0 0 0 ENSG00000140675|ENST00000330498|SLC5A2 ENSG00000140675|ENST00000330498|SLC5A2 ENSG00000140675|ENST00000330498|SLC5A2 MULTI-MSMS UPN46_class_I_Rep_3 1 472.7713317871094 2 472.269616 942.524678 0.22421 0.00010589 -0.15708 -7.4186E-05 0.067129 3.1703E-05 472.26937955996937 78.491 0.3812 78.491 78.383 78.764 0 54 40 2 0 0 0 0.82752 2 18390 18390;18399 0.69038 0 1 59601 52 3187 38 38 83;84 83 0.05111705503259145 AARTQLSPR 9 Unmodified _AARTQLSPR_ 0 0 0 ENST00000262494.12_3_16:56380485-56380713:+|nuORF ENST00000262494.12_3_16:56380485-56380713:+|nuORF ENST00000262494.12_3_16:56380485-56380713:+|nuORF MSMS UPN46_class_I_Rep_3 1 500.2880554199219 2 500.28834 998.562127 NaN NaN NaN NaN NaN NaN NaN 12.276 1 12.276 11.776 12.776 0 0 0 0 0.37891 1 69 69 5.7319 0.97584 1 53 5969 39 39 85 85 0.06278796768890516 AASPFLGLHI 10 Unmodified _AASPFLGLHI_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MSMS UPN48_class_I_Rep_2 6 513.2926025390625 2 513.292559 1024.57057 0.4154 0.00021322 0.35636 0.00018292 0.77177 0.00039614 513.2923794830361 58.967 0.69399 62.465 62.218 62.912 3.4987 71 45 2 0 0 0 0.55983 1 13028 13028 3.9444 0.66309 1 108840 54 2361 40 40 86 86 0.05926350685513171 AAVDAGMAM 9 2 Oxidation (M) _AAVDAGM(Oxidation (M))AM(Oxidation (M))_ AAVDAGM(1)AM(1) AAVDAGM(78)AM(78) 0 0 2 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN46_class_I_Rep_3 1 434.6802062988281 2 434.680596 867.346639 -0.29793 -0.00012951 -0.28356 -0.00012326 -0.5815 -0.00025277 434.680413725051 21.836 0.56312 21.836 21.382 21.945 0 115 65 2 0 0 0 0.0055873 2 2443 2443;2531 77.984 38.027 1 508410 55 772 41 41 87;88 87 7;8 -0.09234048802431971 AAVDAGMAM 9 2 Oxidation (M) _AAVDAGM(Oxidation (M))AM(Oxidation (M))_ AAVDAGM(1)AM(1) AAVDAGM(110)AM(110) 0 0 2 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN46_class_I_Rep_3 1 434.6803894042969 2 434.680596 867.346639 -0.285 -0.00012388 -0.088926 -3.8655E-05 -0.37392 -0.00016254 434.68048280430304 22.357 1.2154 22.357 21.945 23.161 0 182 124 3 0 0 0 0.0071132 1 2616 2616 114.94 57.472 1 604370 56 772 41 41 89 89 7;8 -0.09234048802431971 AAVEFCTLSTY 11 Unmodified _AAVEFCTLSTY_ 0 0 0 REV__MER4E1_dup980|chr20:25694627-25694994:+|1.6526473246477582|0.4032645454249017|2.03|151.0|3|1|sense REV__MER4E1_dup980|chr20:25694627-25694994:+|1.6526473246477582|0.4032645454249017|2.03|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 602.7825317382812 2 602.781364 1203.54818 NaN NaN NaN NaN NaN NaN NaN 68.759 1 72.267 71.767 72.767 3.5083 0 0 0 0.38417 1 15879 15879 5.2969 2.0156 1 + 57 31369 42 42 90 90 -0.04545661565066439 AAVEFCTLSTY 11 Unmodified _AAVEFCTLSTY_ 0 0 0 REV__MER4E1_dup980|chr20:25694627-25694994:+|1.6526473246477582|0.4032645454249017|2.03|151.0|3|1|sense REV__MER4E1_dup980|chr20:25694627-25694994:+|1.6526473246477582|0.4032645454249017|2.03|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 602.7789916992188 2 602.781364 1203.54818 NaN NaN NaN NaN NaN NaN NaN 68.857 1 72.366 71.866 72.866 3.5094 0 0 0 0.38417 1 15818 15818 4.897 1.6157 1 + 58 31369 42 42 91 91 -0.04545661565066439 AAVKLPTM 8 Unmodified _AAVKLPTM_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS UPN47_class_I_Rep_1 2 416.2418518066406 2 415.743857 829.47316 0.098555 4.0974E-05 -1.8987 -0.00078936 -1.8001 -0.00074839 415.7448176451904 96.543 0.057671 100.32 100.29 100.34 3.7767 13 7 3 0 0 0 0.82752 1 23935 23935 0.69038 0 1 142300 + 59 20293 43 43 92 92 0.05160245485001269 AAVKLPTM 8 Unmodified _AAVKLPTM_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MATCH UPN46_class_I_Rep_3 1 2 415.743857 829.47316 0.081445 3.386E-05 0.19591 8.1448E-05 0.27735 0.00011531 415.7456810777616 100.5 0.049484 100.5 100.47 100.52 0 0.11055 -0.0023544 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 13775 + 60 20293 43 43 0.05160245485001269 AAVKLPTM 8 Unmodified _AAVKLPTM_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 415.743857 829.47316 0.098555 4.0974E-05 -1.8987 -0.00078936 -1.8001 -0.00074839 415.7448176451904 96.543 0.057671 100.32 100.29 100.34 3.7767 -0.072597 -0.004096 NaN 0.69038 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 142300 + 61 20293 43 43 0.05160245485001269 AAVKLPTM 8 Unmodified _AAVKLPTM_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MATCH UPN47_class_I_Rep_2 3 2 415.743857 829.47316 -0.39712 -0.0001651 5.1186 0.002128 4.7215 0.0019629 415.7462711043501 96.784 0.093376 100.26 100.2 100.29 3.4791 -0.12922 0.0017388 NaN 0.69038 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 149410 + 62 20293 43 43 0.05160245485001269 AAVKLPTM 8 Unmodified _AAVKLPTM_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MATCH UPN47_class_I_Rep_3 4 2 415.743857 829.47316 -0.59109 -0.00024574 4.5225 0.0018802 3.9314 0.0016345 415.7462437784264 97.011 0.039642 100.43 100.41 100.45 3.414 0.033155 0.0012431 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 126450 + 63 20293 43 43 0.05160245485001269 AAVKLPTM 8 Unmodified _AAVKLPTM_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MATCH UPN48_class_I_Rep_3 7 2 415.743857 829.47316 0.098034 4.0757E-05 -0.051266 -2.1313E-05 0.046768 1.9444E-05 415.7458852410428 96.542 0.044273 100.45 100.42 100.46 3.9084 0.058112 -0.0025599 NaN 0.69038 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 92798 + 64 20293 43 43 0.05160245485001269 AAVVVEISGLV 11 Unmodified _AAVVVEISGLV_ 0 0 0 ENST00000586934.5_1_19:5623180-5651054:+|nuORF ENST00000586934.5_1_19:5623180-5651054:+|nuORF ENST00000586934.5_1_19:5623180-5651054:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.8187255859375 2 528.818607 1055.62266 0.32139 0.00016996 -0.12586 -6.6559E-05 0.19553 0.0001034 528.8183919810782 64.34 0.49445 67.696 67.617 68.112 3.3557 79 52 2 0 0 0 0.48412 1 15343 15343 8.1555 0.24537 1 309580 65 7589 44 44 93 93 0.09707469308591499 AAWLLLAN 8 Unmodified _AAWLLLAN_ 0 0 0 MLT2E_dup189|chr7:142471564-142472174:-|1.1893923728231772|0.017861905922363|6.06|149.0|37|3|anti-sense MLT2E_dup189|chr7:142471564-142472174:-|1.1893923728231772|0.017861905922363|6.06|149.0|37|3|anti-sense MLT2E_dup189|chr7:142471564-142472174:-|1.1893923728231772|0.017861905922363|6.06|149.0|37|3|anti-sense MSMS UPN48_class_I_Rep_1 5 436.2539978027344 2 436.255446 870.496338 NaN NaN NaN NaN NaN NaN NaN 103.27 1 106.89 106.39 107.39 3.6209 0 0 0 0.40581 1 24898 24898 2.8892 0 1 66 16519 45 45 94 94 0.055910075939777926 AAWLPKVN 8 Unmodified _AAWLPKVN_ 0 0 0 REV__ENST00000530869.1_1_8:42614249-42623609:-|nuORF REV__ENST00000530869.1_1_8:42614249-42623609:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.26251220703125 2 449.760895 897.507237 0.17976 8.085E-05 -0.91603 -0.00041199 -0.73626 -0.00033114 449.7603753905964 108.77 0.28633 112.41 112.29 112.58 3.6355 41 24 2 0 0 0 0.82752 1 26832 26832 2.5775 2.5775 1 9542000 + 67 22848 46 46 95 95 0.054384099682806664 AAWTKKLR 8 Unmodified _AAWTKKLR_ 0 0 0 REV__ENSG00000143344|ENST00000360851|RGL1 REV__ENSG00000143344|ENST00000360851|RGL1 MSMS UPN47_class_I_Rep_1 2 487.30291748046875 2 487.300719 972.586885 NaN NaN NaN NaN NaN NaN NaN 110.47 1 114.05 113.55 114.55 3.5835 0 0 0 0.40738 1 27235 27235 0.79363 0 1 + 68 19440 47 47 96 96 0.09949476642270838 AAYEELPI 8 Unmodified _AAYEELPI_ 0 0 0 REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF MSMS UPN47_class_I_Rep_3 4 453.23211669921875 2 453.234376 904.454199 NaN NaN NaN NaN NaN NaN NaN 28.094 1 31.427 30.927 31.927 3.3337 0 0 0 0.40625 1 4358 4358 2.3027 0.82083 1 + 69 19096 48 48 97 97 -0.0018501260504990569 AAYLRALSL 9 Unmodified _AAYLRALSL_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_1 5 489.2920227050781 2 489.292559 976.570566 0.28977 0.00014178 -0.0913 -4.4672E-05 0.19848 9.7112E-05 489.29230307672697 59.258 0.51585 62.738 62.409 62.925 3.4801 37 29 2 0 0 0 0.39745 1 12948 12948 8.1555 0.8663 1 125770 70 3464 49 49 98 98 0.0813435068552053 AAYLRALSL 9 Unmodified _AAYLRALSL_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_2 6 489.2926940917969 2 489.292559 976.570566 0.34385 0.00016824 -0.21545 -0.00010542 0.1284 6.2823E-05 489.2923142803401 59.185 0.50324 62.682 62.382 62.885 3.4976 48 32 2 0 0 0 0.14216 2 12952 12904;12952 26.268 12.362 1 129250 71 3464 49 49 99;100 100 0.0813435068552053 AAYLRALSL 9 Unmodified _AAYLRALSL_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_3 7 489.2924499511719 2 489.292559 976.570566 0.19743 9.6603E-05 -0.090396 -4.423E-05 0.10704 5.2373E-05 489.2924801843381 58.98 0.44583 62.503 62.294 62.74 3.5231 50 29 2 0 0 0 0.24936 1 12821 12821 17.113 6.289 1 101350 72 3464 49 49 101 101 0.0813435068552053 AAYNLTGFNIF 11 Unmodified _AAYNLTGFNIF_ 0 0 0 nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 MULTI-MSMS UPN48_class_I_Rep_1 5 615.8121948242188 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.3053 2 15460 15460;15661 23.79 2.2528 1 904810 73 1820 50 50 102;103 102 0.002453971604609251 AAYNLTGFNIF 11 Unmodified _AAYNLTGFNIF_ 0 0 0 nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 MULTI-MSMS UPN48_class_I_Rep_3 7 615.8121337890625 2 615.811313 1229.60807 0.62552 0.0003852 0.26056 0.00016046 0.88608 0.00054566 615.8115476347172 67.293 0.96441 70.801 70.328 71.292 3.5077 191 78 3 0 0 0 0.3053 3 15380 15228;15380;15473 23.79 2.2528 1 835100 74 1820 50 50 104;105;106 105 0.002453971604609251 AAYTYCYFL 9 Unmodified _AAYTYCYFL_ 0 0 0 MER41B_dup2168|chr14:102856187-102856717:-|1.1425339456526389|0.0052755371416822|7.76|151.0|15|1|anti-sense MER41B_dup2168|chr14:102856187-102856717:-|1.1425339456526389|0.0052755371416822|7.76|151.0|15|1|anti-sense MER41B_dup2168|chr14:102856187-102856717:-|1.1425339456526389|0.0052755371416822|7.76|151.0|15|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 558.2822875976562 2 557.749336 1113.48412 0.4221 0.00023542 2.6596 0.0014834 3.0817 0.0017188 557.7506085685449 71.545 0.12701 74.834 74.786 74.913 3.2899 17 10 2 0 0 0 0.11959 1 17477 17477 7.9102 0 1 63839 75 15973 51 51 107 107 -0.06808396931364769 ACDFDGDCWF 10 Unmodified _ACDFDGDCWF_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MSMS UPN46_class_I_Rep_3 1 589.2237548828125 2 589.699517 1177.38448 NaN NaN NaN NaN NaN NaN NaN 118.39 1 118.39 117.89 118.89 0 0 0 0 0.53105 1 29386 29386 0 0 1 + 76 20277 52 52 108 108 -0.1971158260764696 ACFCYLRFW 9 Unmodified _ACFCYLRFW_ 0 0 0 L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense MSMS UPN47_class_I_Rep_2 3 604.7756958007812 2 604.772622 1207.53069 NaN NaN NaN NaN NaN NaN NaN 16.78 1 20.166 19.666 20.666 3.3864 0 0 0 0.40038 1 1132 1132 0.6015 0.076735 1 77 9325 53 53 109 109 -0.06477235581064633 ACFWRKKI 8 Unmodified _ACFWRKKI_ 0 0 0 ENST00000506323.1_1_4:101395197-101439143:-|nuORF ENST00000506323.1_1_4:101395197-101439143:-|nuORF ENST00000506323.1_1_4:101395197-101439143:-|nuORF MSMS UPN47_class_I_Rep_1 2 526.2979736328125 2 526.297122 1050.57969 NaN NaN NaN NaN NaN NaN NaN 16.682 1 20.205 19.705 20.705 3.5224 0 0 0 0.40738 1 1113 1113 0.79363 0.19213 1 78 7157 54 54 110 110 0.05642420770186618 ACGWMWGR 8 Unmodified _ACGWMWGR_ 0 0 0 REV__ENST00000563067.5_1_16:2258286-2258875:+|nuORF REV__ENST00000563067.5_1_16:2258286-2258875:+|nuORF MSMS UPN47_class_I_Rep_3 4 483.7079162597656 2 483.707282 965.400012 NaN NaN NaN NaN NaN NaN NaN 41.549 1 44.786 44.286 45.286 3.2372 0 0 0 0.40604 1 8438 8438 2.5775 0 1 + 79 20246 55 55 111 111 -0.08407206509252774 ACHCPENEY 9 Unmodified _ACHCPENEY_ 0 0 0 nc|ENSG00000064692|Q9Y6H5-6|SNCAIP;nc|ENSG00000064692|Q9Y6H5-3|SNCAIP nc|ENSG00000064692|Q9Y6H5-6|SNCAIP nc|ENSG00000064692|Q9Y6H5-6|SNCAIP MSMS UPN46_class_I_Rep_3 1 533.1909790039062 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 17.771 1 17.771 17.271 18.271 0 0 0 0 0.40038 1 1450 1450 0.6015 0.14316 1 80 16631 56 56 112 112 -0.1604444940483063 ACHFIALHSY 10 Unmodified _ACHFIALHSY_ 0 0 0 Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|56|3|sense Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|56|3|sense Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|56|3|sense MSMS UPN47_class_I_Rep_1 2 581.2786865234375 2 581.279126 1160.5437 NaN NaN NaN NaN NaN NaN NaN 48.791 1 52.473 51.973 52.973 3.6819 0 0 0 0.53105 1 10557 10557 3.5965 1.3137 1 81 33065 57 57 113 113 -0.03015081197327163 ACHHHHHRH 9 Unmodified _ACHHHHHRH_ 0 0 0 ENST00000524325.5_2_8:143293473-143310920:-|nuORF ENST00000524325.5_2_8:143293473-143310920:-|nuORF ENST00000524325.5_2_8:143293473-143310920:-|nuORF MSMS UPN48_class_I_Rep_2 6 586.2628173828125 2 586.262999 1170.51145 NaN NaN NaN NaN NaN NaN NaN 27.992 1 31.623 31.123 32.123 3.6311 0 0 0 0.40038 1 3793 3793 0.6015 0 1 82 7250 58 58 114 114 -0.06699011037107994 ACKVFTEKSV 10 Unmodified _ACKVFTEKSV_ 0 0 0 L1M1_dup4519|chr9:5157654-5159889:+|4.64374623598569|0.0287979510382044|7.33|151.0|118|2|anti-sense L1M1_dup4519|chr9:5157654-5159889:+|4.64374623598569|0.0287979510382044|7.33|151.0|118|2|anti-sense L1M1_dup4519|chr9:5157654-5159889:+|4.64374623598569|0.0287979510382044|7.33|151.0|118|2|anti-sense MSMS UPN48_class_I_Rep_3 7 556.2966918945312 2 556.294442 1110.57433 NaN NaN NaN NaN NaN NaN NaN 86.295 1 90.065 89.565 90.565 3.7701 0 0 0 0.53105 1 20488 20488 1.3295 0.5359 1 83 8571 59 59 115 115 0.023466523970455455 ACLLWCLHR 9 Unmodified _ACLLWCLHR_ 0 0 0 REV__ENST00000368589.5_1_1:153949446-153949908:-|nuORF REV__ENST00000368589.5_1_1:153949446-153949908:-|nuORF MSMS UPN47_class_I_Rep_1 2 557.7872314453125 2 557.786064 1113.55758 NaN NaN NaN NaN NaN NaN NaN 77.672 1 81.101 80.601 81.601 3.4289 0 0 0 0.39428 1 19282 19282 2.0598 0.21551 1 + 84 19455 60 60 116 116 0.005338730300991301 ACMCLYKE 8 Unmodified _ACMCLYKE_ 0 0 0 REV__L1ME3G_dup2745|chr3:25742116-25742382:+|1.2136913583727371|0.1299653652288082|3.22|151.0|1|1|sense REV__L1ME3G_dup2745|chr3:25742116-25742382:+|1.2136913583727371|0.1299653652288082|3.22|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 480.70098876953125 2 480.703017 959.391481 NaN NaN NaN NaN NaN NaN NaN 22.674 1 22.674 22.174 23.174 0 0 0 0 0.40581 1 2730 2730 2.8892 0.31174 1 + 85 28194 61 61 117 117 -0.08983941260760275 ACPLLPKQ 8 Unmodified _ACPLLPKQ_ 0 0 0 Charlie2a_dup1915|chr17:4440921-4441110:+|1.8819146687370645|0.0048373144913784|8.6|149.0|16|3|anti-sense Charlie2a_dup1915|chr17:4440921-4441110:+|1.8819146687370645|0.0048373144913784|8.6|149.0|16|3|anti-sense Charlie2a_dup1915|chr17:4440921-4441110:+|1.8819146687370645|0.0048373144913784|8.6|149.0|16|3|anti-sense MSMS UPN46_class_I_Rep_3 1 435.2486572265625 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 26.929 1 26.929 26.429 27.429 0 0 0 0 0.40738 1 3926 3926 0.79363 0 1 86 511 62 62 118 118 0.04455647859288092 ACPMTYRK 8 Unmodified _ACPMTYRK_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|72|2|sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|72|2|sense MSMS UPN47_class_I_Rep_1 2 485.2762756347656 2 485.235873 968.457192 NaN NaN NaN NaN NaN NaN NaN 18.27 1 21.835 21.335 22.335 3.5645 0 0 0 0.40738 1 1499 1499 0.79363 0.10326 1 + 87 23738 63 63 119 119 -0.02829784023549564 ACRIKGKK 8 Unmodified _ACRIKGKK_ 0 0 0 L1ME3B_dup5885|chr12:76417237-76417990:-|1.4673502274543904|0.016312219409403|6.49|151.0|19|2|sense L1ME3B_dup5885|chr12:76417237-76417990:-|1.4673502274543904|0.016312219409403|6.49|151.0|19|2|sense L1ME3B_dup5885|chr12:76417237-76417990:-|1.4673502274543904|0.016312219409403|6.49|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 452.26904296875 2 452.281472 902.548391 NaN NaN NaN NaN NaN NaN NaN 32.8 1 32.8 32.3 33.3 0 0 0 0 0.40738 1 5658 5658 0.79363 0 1 88 12722 64 64 120 120 0.09321847736100608 ACRKNLSKGY 10 Unmodified _ACRKNLSKGY_ 0 0 0 nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305 nc|ENSG00000179676|Q7Z4B0-2|LINC00305 nc|ENSG00000179676|Q7Z4B0-2|LINC00305 MULTI-MSMS UPN48_class_I_Rep_2 6 570.306884765625 2 570.303133 1138.59171 0.43706 0.00024926 3.8811 0.0022134 4.3182 0.0024627 570.3056416703696 39.521 0.034927 43.251 43.225 43.26 3.7297 5 3 2 0 0 0 0.56333 1 7024 7024 1.4819 0 1 37777 89 16765 65 65 121 121 0.027959927227357184 ACSSLKLKGYK 11 Unmodified _ACSSLKLKGYK_ 0 0 0 REV__LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|20|1|anti-sense REV__LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_2 6 599.3366088867188 2 599.336641 1196.65873 NaN NaN NaN NaN NaN NaN NaN 73.799 1 77.376 76.876 77.876 3.5779 0 0 0 0.38417 1 17341 17341 2.4985 0.43874 1 + 90 31020 66 66 122 122 0.06826603213812632 ACTLLCCCCCC 11 Unmodified _ACTLLCCCCCC_ 0 0 0 L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|14|1|sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|14|1|sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 569.7760009765625 2 569.671165 1137.32778 NaN NaN NaN NaN NaN NaN NaN 51.852 1 55.374 54.874 55.874 3.5227 0 0 0 0.38417 1 10735 10735 0.30703 0.30703 1 91 13771 67 67 123 123 -0.2353945234767707 ACWAINLQV 9 Unmodified _ACWAINLQV_ 0 0 0 REV__Charlie20a_dup17|chr1:43752796-43753530:-|2.682896686929209|0.0155525930017373|7.43|151.0|46|2|anti-sense REV__Charlie20a_dup17|chr1:43752796-43753530:-|2.682896686929209|0.0155525930017373|7.43|151.0|46|2|anti-sense MSMS UPN46_class_I_Rep_3 1 509.2169189453125 2 509.262945 1016.51134 NaN NaN NaN NaN NaN NaN NaN 94.887 1 94.887 94.387 95.387 0 0 0 0 0.40038 1 23023 23023 0.6015 0 1 + 92 17359 68 68 124 124 0.0037413139966702147 ACWEDWPI 8 Unmodified _ACWEDWPI_ 0 0 0 REV__ENST00000373701.7_1_X:70782701-70782758:+|nuORF REV__ENST00000373701.7_1_X:70782701-70782758:+|nuORF MSMS UPN47_class_I_Rep_1 2 510.2340393066406 2 510.218203 1018.42185 NaN NaN NaN NaN NaN NaN NaN 18.295 1 21.876 21.376 22.376 3.5806 0 0 0 0.40746 1 1506 1506 0.69038 0 1 + 93 21991 69 69 125 125 -0.08662123279702882 ACWWISFC 8 Unmodified _ACWWISFC_ 0 0 0 ENST00000367137.3_1_1:205779710-205779761:-|nuORF ENST00000367137.3_1_1:205779710-205779761:-|nuORF ENST00000367137.3_1_1:205779710-205779761:-|nuORF MSMS UPN48_class_I_Rep_1 5 508.2119445800781 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 49.394 1 52.919 52.419 53.419 3.5246 0 0 0 0.40404 1 9977 9977 5.2307 0.47466 1 94 6343 70 70 126 126 -0.09744857943576335 ACYRGSGGKLA 11 Unmodified _ACYRGSGGKLA_ 0 0 0 L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|176|2|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|176|2|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|176|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.773193359375 2 541.774208 1081.53386 0.3435 0.0001861 -0.71177 -0.00038562 -0.36827 -0.00019952 541.7737259534262 53.516 0.60718 57.044 56.792 57.399 3.5278 50 39 2 0 0 0 0.66945 1 11973 11973 1.4819 1.4819 1 100210 95 15109 71 71 127 127 -0.003642692026687655 ADAWGSKPSW 10 Unmodified _ADAWGSKPSW_ 0 0 0 REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 552.7589721679688 2 552.759081 1103.50361 0.036372 2.0105E-05 0.27686 0.00015304 0.31323 0.00017314 552.7592021069767 41.87 0.58426 45.549 45.238 45.822 3.6792 73 41 2 0 0 0 0.56118 1 8490 8490 2.9952 0.41776 1 99319 + 96 17941 72 72 128 128 -0.04400304596242677 ADAWGSKPSW 10 Unmodified _ADAWGSKPSW_ 0 0 0 REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 553.2608642578125 2 552.759081 1103.50361 0.075328 4.1638E-05 0.25201 0.0001393 0.32734 0.00018094 552.7592048981452 42.365 0.66424 45.604 45.256 45.92 3.2394 77 46 2 0 0 0 0.56118 2 8665 8665;8730 2.9952 0.10602 1 98376 + 97 17941 72 72 129;130 129 -0.04400304596242677 ADDLGEPAPL 10 Unmodified _ADDLGEPAPL_ 0 0 0 nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3 nc|ENSG00000114923|P48751-2|SLC4A3 nc|ENSG00000114923|P48751-2|SLC4A3 MSMS UPN47_class_I_Rep_1 2 499.23504638671875 2 499.245472 996.476391 NaN NaN NaN NaN NaN NaN NaN 77.101 1 80.516 80.016 81.016 3.4149 0 0 0 0.53105 1 19111 19111 5.7319 0.50118 1 98 2099 73 73 131 131 -0.021988329272971896 ADEINFEDFL 10 Unmodified _ADEINFEDFL_ 0 0 0 nc|ENSG00000088992|Q96BS2-2|TESC;nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC nc|ENSG00000088992|Q96BS2-2|TESC nc|ENSG00000088992|Q96BS2-2|TESC MSMS UPN47_class_I_Rep_2 3 404.8502502441406 3 404.852154 1211.53463 NaN NaN NaN NaN NaN NaN NaN 20.002 1 23.398 22.898 23.898 3.3963 0 0 0 0.53105 1 1996 1996 1.4551 0.44154 1 99 1324 74 74 132 132 -0.06267196072644765 ADETPSCTLLD 11 Unmodified _ADETPSCTLLD_ 0 0 0 REV__ENSG00000064999|ENST00000360359|ANKS1A REV__ENSG00000064999|ENST00000360359|ANKS1A MSMS UPN47_class_I_Rep_2 3 582.7593383789062 2 582.758086 1163.50162 NaN NaN NaN NaN NaN NaN NaN 19.216 1 22.612 22.112 23.112 3.3963 0 0 0 0.38417 1 1769 1769 1.1933 0 1 + 100 17747 75 75 133 133 -0.07359146187013721 ADEWINKIW 9 Unmodified _ADEWINKIW_ 0 0 0 L1MB8_dup14546|chr17:48868147-48868532:+|1.3037535428783549|0.4677119979967855|1.48|151.0|11|3|sense;L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|11|2|sense L1MB8_dup14546|chr17:48868147-48868532:+|1.3037535428783549|0.4677119979967855|1.48|151.0|11|3|sense L1MB8_dup14546|chr17:48868147-48868532:+|1.3037535428783549|0.4677119979967855|1.48|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 587.796875 2 587.798206 1173.58186 NaN NaN NaN NaN NaN NaN NaN 12.901 1 16.351 15.851 16.851 3.45 0 0 0 0.4007 1 184 184 0.52476 0.12405 1 101 10273 76 76 134 134 0.0020112798899845075 ADFFLYIIFY 10 Unmodified _ADFFLYIIFY_ 0 0 0 REV__L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|108|3|anti-sense REV__L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|108|3|anti-sense MSMS UPN48_class_I_Rep_1 5 437.8936767578125 3 437.893514 1310.65871 NaN NaN NaN NaN NaN NaN NaN 59.364 1 62.844 62.344 63.344 3.4801 0 0 0 0.53105 1 13037 13037 3.8763 1.033 1 + 102 26363 77 77 135 135 0.015809264854624416 ADFLRSRRIM 10 Unmodified _ADFLRSRRIM_ 0 0 0 nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7 nc|ENSG00000104888|Q9P2U7-2|SLC17A7 nc|ENSG00000104888|Q9P2U7-2|SLC17A7 MSMS UPN47_class_I_Rep_3 4 632.852294921875 2 632.850781 1263.68701 NaN NaN NaN NaN NaN NaN NaN 57.816 1 60.984 60.484 61.484 3.1681 0 0 0 0.53105 1 13388 13388 0.35063 0 1 103 1712 78 78 136 136 0.0657134591376689 ADGRGSLAHYV 11 Unmodified _ADGRGSLAHYV_ 0 0 0 REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|179|1|anti-sense REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|179|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.2865600585938 2 573.288537 1144.56252 0.36641 0.00021006 -2.3991 -0.0013754 -2.0327 -0.0011653 573.287693236752 57.811 1.3311 61.248 60.804 62.135 3.437 227 93 4 0 0 0 0.26266 1 13342 13342 19.362 0.10495 1 826910 + 104 23912 79 79 137 137 -0.003978283019250739 ADHVECLQLL 10 Unmodified _ADHVECLQLL_ 0 0 0 ENSG00000065413.20,ANKRD44,chr2,-,I22.1,197005911,197007805|38|5.9|2|intron;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44 ENSG00000065413.20,ANKRD44,chr2,-,I22.1,197005911,197007805|38|5.9|2|intron ENSG00000065413.20,ANKRD44,chr2,-,I22.1,197005911,197007805|38|5.9|2|intron MSMS UPN47_class_I_Rep_2 3 570.7310791015625 2 570.789524 1139.56449 NaN NaN NaN NaN NaN NaN NaN 67.241 1 70.504 70.004 71.004 3.2636 0 0 0 0.53105 1 16204 16204 1.4819 0.15237 1 105 1006 80 80 138 138 0.0002946439169591031 ADILRQEQY 9 Unmodified _ADILRQEQY_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MSMS UPN47_class_I_Rep_1 2 568.290283203125 2 568.290745 1134.56694 0.031716 1.8024E-05 0.013097 7.4429E-06 0.044813 2.5467E-05 568.2907816032504 42.979 0.55737 46.666 46.48 47.038 3.6875 67 38 2 0 0 0 0.47493 1 8792 8792 3.2813 0 1 75256 106 3052 81 81 139 139 0.005036361209931783 ADISIIMHNND 11 Unmodified _ADISIIMHNND_ 0 0 0 REV__L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|39|1|sense REV__L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|39|1|sense MSMS UPN47_class_I_Rep_3 4 621.7933349609375 2 621.792795 1241.57104 NaN NaN NaN NaN NaN NaN NaN 29.409 1 32.733 32.233 33.233 3.3235 0 0 0 0.38417 1 4750 4750 2.7352 0 1 + 107 30003 82 82 140 140 -0.0400864244757031 ADLFADYATFA 11 Unmodified _ADLFADYATFA_ 0 0 0 ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT MSMS UPN48_class_I_Rep_2 6 602.779296875 2 602.779679 1203.5448 NaN NaN NaN NaN NaN NaN NaN 68.672 1 72.18 71.68 72.68 3.5083 0 0 0 0.38417 1 15852 15852 5.2969 0 1 108 2146 83 83 141 141 -0.04882588347436467 ADLNNLNIK 9 Unmodified _ADLNNLNIK_ 0 0 0 ENST00000304191.3_1_15:83655114-83657774:+|nuORF ENST00000304191.3_1_15:83655114-83657774:+|nuORF ENST00000304191.3_1_15:83655114-83657774:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 507.3265075683594 2 507.782556 1013.55056 0.19192 9.7453E-05 0.32795 0.00016653 0.51987 0.00026398 507.78264820247597 43.894 0.53151 47.533 47.225 47.756 3.6385 53 34 2 0 0 0 0.099407 1 8178 8178 19.257 2.3147 1 128530 109 6086 84 84 142 142 0.044325549548943854 ADNQYVVVFF 10 Unmodified _ADNQYVVVFF_ 0 0 0 REV__L1PA15_dup144|chr1:85854965-85856512:-|1.425766667789134|0.0054509563173253|8.03|150.0|80|2|anti-sense REV__L1PA15_dup144|chr1:85854965-85856512:-|1.425766667789134|0.0054509563173253|8.03|150.0|80|2|anti-sense MSMS UPN48_class_I_Rep_1 5 601.29736328125 2 601.298039 1200.58152 NaN NaN NaN NaN NaN NaN NaN 46.543 1 50.063 49.563 50.563 3.5192 0 0 0 0.53105 1 9099 9099 1.4819 0 1 + 110 29185 85 85 143 143 -0.010742917308789401 ADPGDREVLR 10 Unmodified _ADPGDREVLR_ 0 0 0 ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3 ENST00000571541.5_1_17:7293706-7296729:-|nuORF ENST00000571541.5_1_17:7293706-7296729:-|nuORF MSMS UPN48_class_I_Rep_2 6 564.29296875 2 564.293819 1126.57309 NaN NaN NaN NaN NaN NaN NaN 39.799 1 43.54 43.04 44.04 3.7413 0 0 0 0.53105 1 7100 7100 1.4819 0.15237 1 111 5212 86 86 144 144 0.014861543525057641 ADRAVFTEL 9 Unmodified _ADRAVFTEL_ 0 0 0 REV__MER52A_dup1057|chr13:28000993-28002447:-|3.4804940260681883|0.0144570276585085|7.91|150.0|51|3|anti-sense REV__MER52A_dup1057|chr13:28000993-28002447:-|3.4804940260681883|0.0144570276585085|7.91|150.0|51|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.2694396972656 2 511.269281 1020.52401 0.22153 0.00011326 0.31921 0.0001632 0.54074 0.00027646 511.26955531535367 48.351 1.045 51.875 51.55 52.595 3.5239 130 71 3 0 0 0 0.33908 1 9710 9710 11.495 0 1 267780 + 112 31405 87 87 145 145 0.0145686606357458 ADRAVFTEL 9 Unmodified _ADRAVFTEL_ 0 0 0 REV__MER52A_dup1057|chr13:28000993-28002447:-|3.4804940260681883|0.0144570276585085|7.91|150.0|51|3|anti-sense REV__MER52A_dup1057|chr13:28000993-28002447:-|3.4804940260681883|0.0144570276585085|7.91|150.0|51|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.2690124511719 2 511.269281 1020.52401 0.20843 0.00010656 0.41545 0.0002124 0.62387 0.00031897 511.26956565094906 48.276 0.98306 51.91 51.516 52.5 3.6339 109 71 2 0 0 0 0.095207 1 9549 9549 34.932 0 1 323980 + 113 31405 87 87 146 146 0.0145686606357458 ADREELFAA 9 Unmodified _ADREELFAA_ 0 0 0 REV__ENSG00000115956|ENST00000234313|PLEK REV__ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_1 2 511.25054931640625 2 511.251089 1020.48762 -0.18533 -9.4748E-05 -0.16184 -8.2742E-05 -0.34717 -0.00017749 511.25094949934817 35.488 0.47561 39.164 38.894 39.37 3.6762 41 31 2 0 0 0 0.43153 2 6523 6479;6523 6.2058 2.2614 1 74759 + 114 18587 88 88 147;148 148 -0.021800108331376578 ADREELFAA 9 Unmodified _ADREELFAA_ 0 0 0 REV__ENSG00000115956|ENST00000234313|PLEK REV__ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_2 3 511.2506408691406 2 511.251089 1020.48762 -0.27123 -0.00013867 0.19834 0.0001014 -0.072891 -3.7265E-05 511.25113429518626 35.689 0.49416 39.101 38.92 39.414 3.4114 56 33 2 0 0 0 0.42249 2 6609 6609;6659 6.7232 6.7232 1 84552 + 115 18587 88 88 149;150 149 -0.021800108331376578 ADREELFAA 9 Unmodified _ADREELFAA_ 0 0 0 REV__ENSG00000115956|ENST00000234313|PLEK REV__ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_3 4 511.2511291503906 2 511.251089 1020.48762 -0.27274 -0.00013944 0.35266 0.0001803 0.079922 4.086E-05 511.25128562090435 35.813 0.61742 39.068 38.848 39.466 3.2547 65 40 2 0 0 0 0.42249 3 6660 6660;6703;6752 6.7232 6.7232 1 72657 + 116 18587 88 88 151;152;153 151 -0.021800108331376578 ADRPLATSLY 10 Unmodified _ADRPLATSLY_ 0 0 0 REV__ENST00000487875.5_1_15:91491769-91496943:+|nuORF REV__ENST00000487875.5_1_15:91491769-91496943:+|nuORF MSMS UPN47_class_I_Rep_2 3 553.81396484375 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 57.744 1 61.035 60.535 61.535 3.2912 0 0 0 0.53105 1 13318 13318 6.7232 0.36906 1 + 117 22611 89 89 154 154 0.028208241263882883 ADSDEEDEDEC 11 Unmodified _ADSDEEDEDEC_ 0 0 0 HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|17|2|sense HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|17|2|sense HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 628.6901245117188 2 628.690794 1255.36704 NaN NaN NaN NaN NaN NaN NaN 117.76 1 121.38 120.88 121.88 3.6215 0 0 0 0.38417 1 28702 28702 0.30703 0.30703 1 118 8269 90 90 155 155 -0.2504329619021064 ADSDMYCL 8 Unmodified _ADSDMYCL_ 0 0 0 L1M1_dup1474|chr3:41862107-41864346:-|1.6367887609965197|0.0133972677158079|6.93|151.0|125|3|anti-sense L1M1_dup1474|chr3:41862107-41864346:-|1.6367887609965197|0.0133972677158079|6.93|151.0|125|3|anti-sense L1M1_dup1474|chr3:41862107-41864346:-|1.6367887609965197|0.0133972677158079|6.93|151.0|125|3|anti-sense MSMS UPN47_class_I_Rep_1 2 459.171875 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 34.739 1 38.425 37.925 38.925 3.6859 0 0 0 0.40581 1 6290 6290 2.8892 1.4073 1 119 8490 91 91 156 156 -0.13085755039321612 ADTEIHFY 8 Unmodified _ADTEIHFY_ 0 0 0 REV__ENSG00000046604|ENST00000261590|DSG2 REV__ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS UPN46_class_I_Rep_3 1 498.2276611328125 2 498.227082 994.439611 0.22791 0.00011355 -0.028194 -1.4047E-05 0.19971 9.9503E-05 498.2270670212096 58.906 0.43309 58.906 58.706 59.139 0 75 48 2 0 0 0 0.82752 1 12961 12961 22.453 1.5814 1 209330 + 120 17659 92 92 157 157 -0.05783084753181811 ADTWEQRIW 9 Unmodified _ADTWEQRIW_ 0 0 0 REV__ENSG00000129749|ENST00000250699|CHRNA10 REV__ENSG00000129749|ENST00000250699|CHRNA10 MSMS UPN47_class_I_Rep_3 4 602.7923583984375 2 602.790912 1203.56727 NaN NaN NaN NaN NaN NaN NaN 23.704 1 27.055 26.555 27.555 3.3509 0 0 0 0.39518 1 3060 3060 1.8442 0.51471 1 + 121 18927 93 93 158 158 -0.026369441591668874 ADVIVFYNNF 10 Unmodified _ADVIVFYNNF_ 0 0 0 L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|128|2|anti-sense L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|128|2|anti-sense L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|128|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 601.2985229492188 2 601.298039 1200.58152 0.48659 0.00029258 0.24536 0.00014753 0.73194 0.00044012 601.2980869678266 89.192 0.69745 92.93 92.699 93.396 3.7379 200 78 3 0 0 0 0.31818 1 21294 21294 27.629 4.8925 1 684930 122 11560 94 94 159 159 -0.010742917308789401 ADYHEEHD 8 Unmodified _ADYHEEHD_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-SECPEP UPN46_class_I_Rep_3 1 508.27276611328125 2 508.191228 1014.3679 0.24232 0.00012314 -0.19102 -9.7072E-05 0.051303 2.6072E-05 508.6926955781234 60.818 0.041847 60.818 60.785 60.827 0 5 4 2 0 0 0 0.72333 1 13508 13508 2.5775 0 1 97180 + 123 19746 95 95 160 160 -0.13870624177707214 ADYIILYP 8 Unmodified _ADYIILYP_ 0 0 0 L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|161|3|sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|161|3|sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|161|3|sense MSMS UPN47_class_I_Rep_1 2 484.2592468261719 2 484.260394 966.506234 NaN NaN NaN NaN NaN NaN NaN 19.155 1 22.736 22.236 23.236 3.5806 0 0 0 0.40581 1 1717 1717 2.8892 0 1 124 8739 96 96 161 161 0.021641508086986505 AEAGGGGYYYL 11 Unmodified _AEAGGGGYYYL_ 0 0 0 REV__ENSG00000238205|ENST00000423387|MPC1L REV__ENSG00000238205|ENST00000423387|MPC1L MULTI-MSMS UPN48_class_I_Rep_1 5 560.7510986328125 2 560.750921 1119.48729 0.45716 0.00025635 -0.019203 -1.0768E-05 0.43795 0.00024558 560.7508167469894 50.472 0.83376 53.996 53.668 54.501 3.5246 136 52 3 0 0 0 0.4608 1 10422 10422 8.7454 1.1365 1 302610 + 125 21320 97 97 162 162 -0.06767430553009035 AEAPACDPTKT 11 Unmodified _AEAPACDPTKT_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MSMS UPN48_class_I_Rep_1 5 552.256103515625 2 552.255514 1102.49647 NaN NaN NaN NaN NaN NaN NaN 29.474 1 33.024 32.524 33.524 3.5499 0 0 0 0.38417 1 4101 4101 1.1933 0.39971 1 + 126 21451 98 98 163 163 -0.05067405258978397 AEARLQIR 8 Unmodified _AEARLQIR_ 0 0 0 HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|8|2|sense HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|8|2|sense HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 479.2297668457031 2 478.785433 955.556313 NaN NaN NaN NaN NaN NaN NaN 29.467 1 32.791 32.291 33.291 3.3235 0 0 0 0.40746 1 4768 4768 0.69038 0 1 127 7914 99 99 164 164 0.07675698257241947 AECSCCDTA 9 Unmodified _AECSCCDTA_ 0 0 0 REV__HERV15-int_dup72|chr16:20674609-20676244:+|1.651297607352332|0.3441978378293773|2.26|150.0|86|3|anti-sense REV__HERV15-int_dup72|chr16:20674609-20676244:+|1.651297607352332|0.3441978378293773|2.26|150.0|86|3|anti-sense MSMS UPN48_class_I_Rep_1 5 451.6242370605469 2 451.638071 901.261589 NaN NaN NaN NaN NaN NaN NaN 45.135 1 48.651 48.151 49.151 3.5162 0 0 0 0.4007 1 8672 8672 0.52476 0.52476 1 + 128 23541 100 100 165 165 -0.19299162330571562 AECVTCELC 9 Unmodified _AECVTCELC_ 0 0 0 REV__ENSG00000055609|ENST00000262189|KMT2C REV__ENSG00000055609|ENST00000262189|KMT2C MULTI-MSMS UPN47_class_I_Rep_2 3 485.68798828125 2 485.687564 969.360574 0.014874 7.2241E-06 0.7806 0.00037913 0.79547 0.00038635 485.687832526834 45.348 0.54084 48.702 48.478 49.019 3.3535 46 31 2 0 0 0 0.48846 1 9580 9580 1.8442 1.1539 1 62410 + 129 17698 101 101 166 166 -0.1253313936564382 AECVTCELC 9 Unmodified _AECVTCELC_ 0 0 0 REV__ENSG00000055609|ENST00000262189|KMT2C REV__ENSG00000055609|ENST00000262189|KMT2C MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 485.687564 969.360574 -0.056972 -2.7671E-05 0.73538 0.00035716 0.6784 0.00032949 485.68784253365624 45.416 0.45187 48.66 48.435 48.886 3.2441 -0.073536 1.0753E-06 NaN 1.8442 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 63360 + 130 17698 101 101 -0.1253313936564382 AEDFDCTLLF 10 Unmodified _AEDFDCTLLF_ 0 0 0 ENST00000331789.9_1_7:5567138-5567345:-|nuORF ENST00000331789.9_1_7:5567138-5567345:-|nuORF ENST00000331789.9_1_7:5567138-5567345:-|nuORF MSMS UPN48_class_I_Rep_2 6 587.2579345703125 2 587.260265 1172.50598 NaN NaN NaN NaN NaN NaN NaN 24.357 1 27.997 27.497 28.497 3.6397 0 0 0 0.53105 1 2813 2813 1.4819 0.79152 1 131 6193 102 102 167 167 -0.07337636973466033 AEDILVFRHD 10 Unmodified _AEDILVFRHD_ 0 0 0 REV__L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|3|1|sense REV__L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 405.5437316894531 3 405.543655 1213.60914 NaN NaN NaN NaN NaN NaN NaN 36.609 1 40.279 39.779 40.779 3.6692 0 0 0 0.53105 1 6853 6853 7.9454 1.711 1 + 132 24713 103 103 168 168 0.01087611529374044 AEDILVFRHD 10 Unmodified _AEDILVFRHD_ 0 0 0 REV__L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|3|1|sense REV__L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 405.54388427734375 3 405.543655 1213.60914 NaN NaN NaN NaN NaN NaN NaN 36.863 1 40.532 40.032 41.032 3.6692 0 0 0 0.53105 1 6930 6930 7.9454 0 1 + 133 24713 103 103 169 169 0.01087611529374044 AEDILVFRHD 10 Unmodified _AEDILVFRHD_ 0 0 0 REV__L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|3|1|sense REV__L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 405.5436096191406 3 405.543655 1213.60914 -1.1923 -0.00048354 0.63692 0.0002583 -0.55539 -0.00022524 405.5439126909612 37.231 0.7897 40.478 40.172 40.962 3.247 86 58 2 0 0 0 0.53162 1 7098 7098 7.9454 0.90831 1 74244 + 134 24713 103 103 170 170 0.01087611529374044 AEDKENYKKF 10 Unmodified _AEDKENYKKF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN47_class_I_Rep_1 2 424.5467834472656 3 424.547065 1270.61937 -0.50326 -0.00021366 -0.16126 -6.8464E-05 -0.66452 -0.00028212 424.54695867726196 15.539 0.59145 19.036 18.897 19.488 3.4968 173 70 4 0 0 0 0.31637 1 839 839 28.181 16.55 1 222850 135 1207;1424 104 104 171 171 -0.005118255360457624 AEDKENYKKF 10 Unmodified _AEDKENYKKF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 424.547065 1270.61937 -0.90631 -0.00038477 0.16601 7.0479E-05 -0.7403 -0.00031429 424.54709897129857 15.721 0.63928 19.107 18.93 19.57 3.3864 0.035535 0.00022557 NaN 28.181 177 73 3 NaN NaN NaN NaN 0 NaN NaN 0 131790 136 1207;1424 104 104 -0.005118255360457624 AEDLLLIHP 9 Unmodified _AEDLLLIHP_ 0 0 0 REV__ENST00000488737.6_1_7:87133561-87160896:-|nuORF REV__ENST00000488737.6_1_7:87133561-87160896:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 510.78936767578125 2 510.78985 1019.56515 -0.18044 -9.2169E-05 -0.23579 -0.00012044 -0.41623 -0.00021261 510.7898854352381 37.402 0.51785 41.067 40.878 41.395 3.6652 51 35 2 0 0 0 0.46434 1 7055 7055 4.3292 0 1 77401 + 137 17956 105 105 172 172 0.056146271030456774 AEDLVANFF 9 Unmodified _AEDLVANFF_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3 ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_1 2 513.2507934570312 2 513.250557 1024.48656 0.30241 0.00015521 -0.0085922 -4.41E-06 0.29382 0.0001508 513.2504609619784 82.711 0.57746 86.25 85.979 86.556 3.5386 88 66 2 0 0 0 0.10568 4 20657 20620;20657;20690;20736 32.786 11.249 1 145010 138 2711 106 106 173;174;175;176 174 -0.024702252020460946 AEDLVANFF 9 Unmodified _AEDLVANFF_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3 ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_2 3 513.2506103515625 2 513.250557 1024.48656 0.19402 9.9581E-05 0.065238 3.3484E-05 0.25926 0.00013306 513.2505710522618 82.765 0.60976 86.163 85.951 86.561 3.3984 108 76 2 0 0 0 0.17897 4 20637 20602;20637;20664;20701 22.736 12.154 1 122840 139 2711 106 106 177;178;179;180 178 -0.024702252020460946 AEDLVANFF 9 Unmodified _AEDLVANFF_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3 ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_3 4 513.2508544921875 2 513.250557 1024.48656 0.30736 0.00015775 -0.03822 -1.9616E-05 0.26914 0.00013813 513.2504117306687 82.939 0.61944 86.276 85.962 86.582 3.337 128 72 2 0 0 0 0.14216 5 20765 20731;20765;20798;20838;20872 26.268 10.119 1 165160 140 2711 106 106 181;182;183;184;185 182 -0.024702252020460946 AEDMVHAILE 10 Unmodified _AEDMVHAILE_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS UPN47_class_I_Rep_1 2 564.740966796875 2 564.273706 1126.53286 NaN NaN NaN NaN NaN NaN NaN 119.63 1 123.24 122.74 123.74 3.6036 0 0 0 0.53105 1 29736 29736 1.4819 0.28856 1 141 5248 107 107 186 186 -0.02534528362252786 AEDWLPVWW 9 Unmodified _AEDWLPVWW_ 0 0 0 REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|122|3|sense REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|122|3|sense MSMS UPN47_class_I_Rep_3 4 601.2866821289062 2 601.287474 1200.5604 NaN NaN NaN NaN NaN NaN NaN 39.771 1 43.009 42.509 43.509 3.2372 0 0 0 0.39428 1 7895 7895 2.0598 0.86641 1 + 142 29985 108 108 187 187 -0.03186257039692464 AEEDFYEKL 9 Unmodified _AEEDFYEKL_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_1 5 572.2642211914062 2 572.263862 1142.51317 0.40157 0.0002298 0.25083 0.00014354 0.6524 0.00037335 572.2637353434811 49.864 0.4834 53.389 53.088 53.572 3.5246 43 29 2 0 0 0 0.14474 2 10125 10073;10125 26.021 17.275 1 151050 143 4246 109 109 188;189 189 -0.05238581101366435 AEEDFYEKL 9 Unmodified _AEEDFYEKL_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_2 6 572.2634887695312 2 572.263862 1142.51317 0.43053 0.00024638 0.11394 6.5206E-05 0.54448 0.00031158 572.2638178492712 49.667 0.55749 53.361 53.092 53.65 3.6946 57 34 2 0 0 0 0.061655 5 10035 10010;10035;10078;10082;10126 43.982 22.57 1 141290 144 4246 109 109 190;191;192;193;194 191 -0.05238581101366435 AEEDFYEKL 9 Unmodified _AEEDFYEKL_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_3 7 572.2640991210938 2 572.263862 1142.51317 0.3653 0.00020905 0.26338 0.00015072 0.62868 0.00035977 572.263878645828 49.734 0.57342 53.355 53.133 53.706 3.621 57 39 2 0 0 0 0.073198 3 10040 9994;10040;10079 40.239 17.503 1 118780 145 4246 109 109 195;196;197 196 -0.05238581101366435 AEEDFYEKL 9 Unmodified _AEEDFYEKL_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MATCH UPN47_class_I_Rep_1 2 2 572.263862 1142.51317 0.20315 0.00011626 1.0746 0.00061494 1.2777 0.0007312 572.7663157094624 49.479 0.3791 53.138 52.982 53.361 3.6592 -0.13169 0.00079026 NaN 43.982 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 119610 146 4246 109 109 -0.05238581101366435 AEEDFYEKL 9 Unmodified _AEEDFYEKL_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MATCH UPN47_class_I_Rep_3 4 2 572.263862 1142.51317 0.47801 0.00027355 1.1499 0.00065807 1.6279 0.00093162 572.2644021519823 49.963 0.35233 53.19 52.941 53.293 3.2262 -0.080039 0.00087651 NaN 43.982 23 20 2 NaN NaN NaN NaN 0 NaN NaN 0 47215 147 4246 109 109 -0.05238581101366435 AEEFVNVY 8 Unmodified _AEEFVNVY_ 0 0 0 ENSG00000132661|ENST00000254998|NXT1 ENSG00000132661|ENST00000254998|NXT1 ENSG00000132661|ENST00000254998|NXT1 MSMS UPN47_class_I_Rep_1 2 485.73046875 2 485.729458 969.444362 NaN NaN NaN NaN NaN NaN NaN 28.038 1 31.804 31.304 32.304 3.7662 0 0 0 0.40404 1 4261 4261 5.2307 2.6532 1 148 2769 110 110 198 198 -0.04158200610424956 AEEGNDSEEVP 11 Unmodified _AEEGNDSEEVP_ 0 0 0 ENSG00000241476|ENST00000337502|SSX2;ENSG00000268447|ENST00000596480|SSX2B;nc|ENSG00000268447|Q16385-2|SSX2 ENSG00000241476|ENST00000337502|SSX2 ENSG00000241476|ENST00000337502|SSX2 MSMS UPN47_class_I_Rep_1 2 588.2388916015625 2 588.238572 1174.46259 NaN NaN NaN NaN NaN NaN NaN 16.482 1 20.004 19.504 20.504 3.5224 0 0 0 0.38417 1 1064 1064 2.4985 0.43874 1 149 5709 111 111 199 199 -0.11766155217037522 AEEKDMQLLS 10 Unmodified _AEEKDMQLLS_ 0 0 0 REV__HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|69|3|anti-sense REV__HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 582.2822265625 2 582.284271 1162.55399 0.026825 1.562E-05 -3.4302 -0.0019973 -3.4034 -0.0019817 582.2821193805916 41.289 0.042999 44.526 44.505 44.548 3.2372 5 3 2 0 0 0 0.56374 1 8365 8365 1.1933 0.12188 1 45310 + 150 23648 112 112 200 200 -0.02078563053396465 AEELERQGY 9 Unmodified _AEELERQGY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS UPN47_class_I_Rep_1 2 547.7587280273438 2 547.759278 1093.504 -0.032279 -1.7681E-05 -0.011191 -6.1298E-06 -0.04347 -2.3811E-05 547.7593325245388 27.63 0.68612 31.396 31.068 31.755 3.7662 79 56 2 0 0 0 0.079935 3 4161 4107;4124;4161 38.615 22.466 1 90249 151 1888 113 113 201;202;203 203 -0.03900929667042874 AEELERQGY 9 Unmodified _AEELERQGY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS UPN47_class_I_Rep_2 3 547.7597045898438 2 547.759278 1093.504 0.024336 1.333E-05 0.49511 0.0002712 0.51944 0.00028453 547.7596255498028 27.723 0.54444 31.222 31.019 31.563 3.4986 59 41 2 0 0 0 0.11648 4 4213 4175;4213;4244;4258 30.703 19.209 1 90624 152 1888 113 113 204;205;206;207 205 -0.03900929667042874 AEELERQGY 9 Unmodified _AEELERQGY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS UPN47_class_I_Rep_3 4 547.759033203125 2 547.759278 1093.504 -0.22667 -0.00012416 0.20716 0.00011347 -0.019513 -1.0688E-05 547.7594348874455 27.929 0.59495 31.262 31.031 31.626 3.3337 83 48 2 0 0 0 0.016816 3 4307 4272;4307;4347 65.474 40.483 1 92167 153 1888 113 113 208;209;210 209 -0.03900929667042874 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN48_class_I_Rep_1 5 507.3031921386719 2 507.303124 1012.5917 0.33189 0.00016837 -0.13759 -6.9798E-05 0.1943 9.8571E-05 507.30309997242364 64.437 0.57407 67.891 67.627 68.201 3.4541 67 46 2 0 0 0 0.073198 3 14526 14526;14563;14606 40.239 13.971 1 184670 154 3728 114 114 211;212;213 211 0.08590315994376851 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN48_class_I_Rep_2 6 507.3027648925781 2 507.303124 1012.5917 0.34793 0.00017651 -0.010137 -5.1426E-06 0.33779 0.00017136 507.303191038765 64.189 0.37138 67.663 67.418 67.79 3.4743 45 27 2 0 0 0 0.038999 2 14484 14484;14507 53.404 15.228 1 268480 155 3728 114 114 214;215 214 0.08590315994376851 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN48_class_I_Rep_2 6 507.8040771484375 2 507.303124 1012.5917 0.34643 0.00017574 -0.043402 -2.2018E-05 0.30303 0.00015373 507.30313013359057 64.447 0.22637 67.921 67.766 67.992 3.4743 27 17 2 0 0 0 0.11355 1 14554 14554 31.268 9.7314 1 140440 156 3728 114 114 216 216 0.08590315994376851 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN48_class_I_Rep_3 7 507.3037414550781 2 507.303124 1012.5917 NaN NaN NaN NaN NaN NaN NaN 63.988 1 67.497 66.997 67.997 3.5083 0 0 0 0.062145 1 14350 14350 33.445 13.03 1 157 3728 114 114 217 217 0.08590315994376851 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN48_class_I_Rep_3 7 507.3031921386719 2 507.303124 1012.5917 NaN NaN NaN NaN NaN NaN NaN 64.121 1 67.63 67.13 68.13 3.5083 0 0 0 0.020029 1 14391 14391 53.404 15.228 1 158 3728 114 114 218 218 0.08590315994376851 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN48_class_I_Rep_3 7 507.3035888671875 2 507.303124 1012.5917 NaN NaN NaN NaN NaN NaN NaN 64.287 1 67.796 67.296 68.296 3.5083 0 0 0 0.075414 1 14442 14442 29.841 12.728 1 159 3728 114 114 219 219 0.08590315994376851 AEELLRIGL 9 Unmodified _AEELLRIGL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.303124 1012.5917 0.24291 0.00012323 -0.078894 -4.0023E-05 0.16401 8.3204E-05 507.30320797065644 64.347 0.15184 67.521 67.395 67.547 3.1741 -0.17072 2.8634E-05 NaN 53.404 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 55428 160 3728 114 114 0.08590315994376851 AEEPREDW 8 Unmodified _AEEPREDW_ 0 0 0 ENST00000338338.9_1_1:1310680-1310836:-|nuORF ENST00000338338.9_1_1:1310680-1310836:-|nuORF ENST00000338338.9_1_1:1310680-1310836:-|nuORF MSMS UPN47_class_I_Rep_2 3 515.8063354492188 2 516.225071 1030.43559 NaN NaN NaN NaN NaN NaN NaN 66.226 1 69.485 68.985 69.985 3.2588 0 0 0 0.40643 1 15897 15897 2.0598 0.40713 1 161 6218 115 115 220 220 -0.07841174246914306 AEEQLHKKQR 10 Unmodified _AEEQLHKKQR_ 0 0 0 ENSG00000120071|ENST00000432791|KANSL1 ENSG00000120071|ENST00000432791|KANSL1 ENSG00000120071|ENST00000432791|KANSL1 MSMS UPN46_class_I_Rep_3 1 422.90155029296875 3 422.901954 1265.68403 NaN NaN NaN NaN NaN NaN NaN 100.43 1 100.43 99.934 100.93 0 0 0 0 0.53105 1 24480 24480 0.69767 0.07084 1 162 2314 116 116 221 221 0.06181794060603352 AEESLFRVF 9 Unmodified _AEESLFRVF_ 0 0 0 ENST00000585550.5_1_17:40855746-40872302:-|nuORF;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1 ENST00000585550.5_1_17:40855746-40872302:-|nuORF ENST00000585550.5_1_17:40855746-40872302:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 549.284423828125 2 549.284931 1096.55531 0.37592 0.00020649 0.51628 0.00028359 0.8922 0.00049007 549.2850094091337 67.054 0.2872 70.416 70.319 70.606 3.3611 29 22 2 0 0 0 0.32682 1 16108 16108 12.241 2.8575 1 74600 163 1878 117 117 222 222 0.010894390976773138 AEESLFRVF 9 Unmodified _AEESLFRVF_ 0 0 0 ENST00000585550.5_1_17:40855746-40872302:-|nuORF;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1 ENST00000585550.5_1_17:40855746-40872302:-|nuORF ENST00000585550.5_1_17:40855746-40872302:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 549.284931 1096.55531 0.36403 0.00019995 0.093802 5.1524E-05 0.45783 0.00025148 549.2849836694696 67.294 0.22438 70.557 70.447 70.672 3.2636 0.070965 -0.00020645 NaN 12.241 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 52570 164 1878 117 117 0.010894390976773138 AEFIMLNHF 9 Oxidation (M) _AEFIM(Oxidation (M))LNHF_ AEFIM(1)LNHF AEFIM(48)LNHF 0 0 1 nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2 nc|ENSG00000006744|Q9BQ52-3|ELAC2 nc|ENSG00000006744|Q9BQ52-3|ELAC2 MULTI-MSMS UPN47_class_I_Rep_3 4 569.2734985351562 2 569.273509 1136.53247 0.40382 0.00022989 -0.65447 -0.00037257 -0.25065 -0.00014269 569.2732844361441 62.439 0.67854 65.606 65.294 65.973 3.1667 62 41 2 0 0 0 0.052902 1 14810 14810 47.749 28.492 1 189680 165 725 118 118 223 223 3 -0.03033903291475326 AEFIMLNHF 9 Oxidation (M) _AEFIM(Oxidation (M))LNHF_ 0 0 1 nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2 nc|ENSG00000006744|Q9BQ52-3|ELAC2 nc|ENSG00000006744|Q9BQ52-3|ELAC2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 569.273509 1136.53247 0.37966 0.00021613 -0.67441 -0.00038393 -0.29475 -0.00016779 569.2732304451866 62.037 0.6215 65.405 65.126 65.747 3.3681 -0.10853 4.4741E-05 NaN 47.749 78 46 2 NaN NaN NaN NaN 0 NaN NaN 0 180550 166 725 118 118 3 -0.03033903291475326 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-SECPEP UPN47_class_I_Rep_1 2 541.261962890625 2 541.779482 1081.54441 0.39576 0.00021441 -1.4387 -0.00077944 -1.0429 -0.00056503 541.7788545159245 56.856 0.67245 60.313 59.903 60.576 3.4572 81 54 2 0 0 0 0.059918 1 13022 13022 34.932 3.6637 1 218520 167 16644 119 119 224 224 0.0069003672338112665 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-SECPEP UPN47_class_I_Rep_2 3 541.26220703125 2 541.779482 1081.54441 0.47811 0.00025903 -1.0198 -0.00055251 -0.54169 -0.00029348 541.7790414742578 57.112 0.66468 60.403 60.055 60.72 3.2912 84 59 2 0 0 0 0.095404 1 13098 13098 22.658 3.2961 1 258830 168 16644 119 119 225 225 0.0069003672338112665 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN47_class_I_Rep_3 4 541.778564453125 2 541.779482 1081.54441 0.35514 0.00019241 -1.0657 -0.0005774 -0.71061 -0.00038499 541.7792079255821 57.138 0.63476 60.306 60.146 60.78 3.1681 97 56 2 0 0 0 0.13455 1 13211 13211 27.223 7.8613 1 201570 169 16644 119 119 226 226 0.0069003672338112665 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_1 5 541.7794799804688 2 541.779482 1081.54441 0.48787 0.00026432 -0.18184 -9.8515E-05 0.30603 0.0001658 541.779296962247 56.999 0.69087 60.493 60.211 60.902 3.4942 140 58 3 0 0 0 0.0055684 4 12309 12270;12309;12348;12386 78.06 39.885 1 482100 170 16644 119 119 227;228;229;230 228 0.0069003672338112665 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_2 6 541.7793579101562 2 541.779482 1081.54441 0.58907 0.00031914 -0.1558 -8.4409E-05 0.43327 0.00023474 541.7792589863651 56.978 0.69372 60.512 60.195 60.889 3.5333 133 61 3 0 0 0 0.026395 6 12276 12219;12236;12276;12315;12360;12373 59.368 13.669 1 517260 171 16644 119 119 231;232;233;234;235;236 233 0.0069003672338112665 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_3 7 541.7794189453125 2 541.779482 1081.54441 0.43785 0.00023722 -0.20055 -0.00010866 0.2373 0.00012856 541.7793010233655 56.835 0.68982 60.378 60.109 60.798 3.5427 177 71 3 0 0 0 0.0055879 4 12212 12142;12180;12212;12252 80.676 26.843 1 525270 172 16644 119 119 237;238;239;240 239 0.0069003672338112665 AEFKEAFQL 9 Unmodified _AEFKEAFQL_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MSMS UPN48_class_I_Rep_3 7 541.780029296875 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 57.224 1 60.767 60.267 61.267 3.5427 0 0 0 0.23173 1 12291 12291 14.405 3.6059 1 173 16644 119 119 241 241 0.0069003672338112665 AEFKEAFQLF 10 Unmodified _AEFKEAFQLF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN47_class_I_Rep_1 2 615.3134155273438 2 615.313689 1228.61282 0.40963 0.00025205 -0.1404 -8.6389E-05 0.26923 0.00016566 615.313485182066 72.34 0.77847 75.72 75.348 76.126 3.3799 143 60 3 0 0 0 0.31951 4 17679 17610;17640;17679;17719 27.223 3.4335 1 312470 174 16644 120 120 242;243;244;245 244 0.007662813032311533 AEFKEAFQLF 10 Unmodified _AEFKEAFQLF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN47_class_I_Rep_2 3 615.3136596679688 2 615.313689 1228.61282 0.43112 0.00026527 -0.079098 -4.867E-05 0.35202 0.0002166 615.3135654630979 72.676 0.83508 75.973 75.444 76.28 3.2971 165 72 3 0 0 0 0.43841 2 17727 17727;17762 16.566 5.5881 1 271520 175 16644 120 120 246;247 246 0.007662813032311533 AEFKEAFQLF 10 Unmodified _AEFKEAFQLF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN47_class_I_Rep_3 4 615.3140869140625 2 615.313689 1228.61282 0.45808 0.00028186 -0.2238 -0.00013771 0.23428 0.00014416 615.3134050731942 72.628 0.66736 75.855 75.471 76.138 3.2271 129 56 3 0 0 0 0.35313 4 17835 17794;17835;17874;17912 23.801 9.3957 1 242460 176 16644 120 120 248;249;250;251 249 0.007662813032311533 AEFKEAFQLF 10 Unmodified _AEFKEAFQLF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MATCH UPN48_class_I_Rep_1 5 2 615.313689 1228.61282 0.46479 0.00028599 1.2243 0.0007533 1.689 0.0010393 615.3133479766487 72.348 0.036995 75.821 75.808 75.845 3.4732 -0.020935 0.0016931 NaN 27.223 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 55196 177 16644 120 120 0.007662813032311533 AEFMGGYVYL 10 Unmodified _AEFMGGYVYL_ 0 0 0 REV__ENST00000569487.1_1_16:87742077-87743168:-|nuORF REV__ENST00000569487.1_1_16:87742077-87743168:-|nuORF MSMS UPN47_class_I_Rep_3 4 574.8009033203125 2 575.267893 1148.52123 NaN NaN NaN NaN NaN NaN NaN 55.077 1 58.254 57.754 58.754 3.1779 0 0 0 0.53105 1 12557 12557 1.6526 0 1 + 178 18262 121 121 252 252 -0.04708725385580692 AEFPLDPQL 9 Unmodified _AEFPLDPQL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541777-24541846:-|nuORF;ENST00000503562.1_1_4:24541566-24543501:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2656860351562 2 515.266207 1028.51786 0.38677 0.00019929 -0.23844 -0.00012286 0.14834 7.6433E-05 515.2662210688499 74.286 0.1059 77.837 77.737 77.843 3.5505 25 14 3 0 0 0 0.32682 1 17391 17391 12.241 6.0349 1 177920 179 1900 122 122 253 253 0.004743478320506256 AEFQRLPSY 9 Unmodified _AEFQRLPSY_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN47_class_I_Rep_1 2 555.78271484375 2 555.782556 1109.55056 NaN NaN NaN NaN NaN NaN NaN 46.331 1 50.031 49.531 50.531 3.6999 0 0 0 0.24627 1 9817 9817 13.615 4.2674 1 180 1214 123 123 254 254 0.00016554954913772235 AEFQRLPSY 9 Unmodified _AEFQRLPSY_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN47_class_I_Rep_2 3 555.7818603515625 2 555.782556 1109.55056 NaN NaN NaN NaN NaN NaN NaN 46.702 1 50.054 49.554 50.554 3.3515 0 0 0 0.38073 1 9959 9959 5.2969 0.54088 1 181 1214 123 123 255 255 0.00016554954913772235 AEFQRLPSY 9 Unmodified _AEFQRLPSY_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-MSMS UPN47_class_I_Rep_3 4 555.78173828125 2 555.782556 1109.55056 0.31443 0.00017475 0.09338 5.1899E-05 0.40781 0.00022665 555.7824304801786 46.833 0.44508 50.077 49.817 50.262 3.2439 35 27 2 0 0 0 0.47493 1 10086 10086 3.2813 1.4371 1 47870 182 1214 123 123 256 256 0.00016554954913772235 AEFSKERYGK 10 Unmodified _AEFSKERYGK_ 0 0 0 nc|ENSG00000068400|Q4V328-2|GRIPAP1 nc|ENSG00000068400|Q4V328-2|GRIPAP1 nc|ENSG00000068400|Q4V328-2|GRIPAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 405.5436096191406 3 405.543655 1213.60914 -1.1923 -0.00048354 0.63692 0.0002583 -0.55539 -0.00022524 405.5439126909612 37.231 0.7897 40.478 40.172 40.962 3.247 86 58 2 0 0 0 0.55335 1 7137 7137 5.0475 0.64137 1 74244 183 16633 124 124 257 257 0.010876115293513067 AEFVGVSHL 9 Unmodified _AEFVGVSHL_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF;ENSG00000141101|ENST00000268802|NOB1 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MSMS UPN48_class_I_Rep_1 5 479.75335693359375 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 48.701 1 52.225 51.725 52.725 3.5239 0 0 0 0.058622 1 9763 9763 34.402 20.496 1 184 3206 125 125 258 258 0.01153498380426754 AEFVGVSHL 9 Unmodified _AEFVGVSHL_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF;ENSG00000141101|ENST00000268802|NOB1 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.75299072265625 2 479.753267 957.491981 0.14528 6.9697E-05 -0.12282 -5.8923E-05 0.022457 1.0774E-05 479.75322343808864 48.487 0.50745 52.204 52.023 52.531 3.7175 44 37 2 0 0 0 0.23293 1 9689 9689 18.146 11.423 1 73358 185 3206 125 125 259 259 0.01153498380426754 AEFVGVSHL 9 Unmodified _AEFVGVSHL_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF;ENSG00000141101|ENST00000268802|NOB1 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MSMS UPN48_class_I_Rep_3 7 479.7527160644531 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 48.554 1 52.188 51.688 52.688 3.6339 0 0 0 0.10315 1 9653 9653 24.021 13.197 1 186 3206 125 125 260 260 0.01153498380426754 AEFVGVSHL 9 Unmodified _AEFVGVSHL_ 0 0 0 ENST00000502915.1_1_4:139481866-139482694:+|nuORF;ENSG00000141101|ENST00000268802|NOB1 ENST00000502915.1_1_4:139481866-139482694:+|nuORF ENST00000502915.1_1_4:139481866-139482694:+|nuORF MSMS UPN48_class_I_Rep_3 7 479.7537841796875 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 48.712 1 52.341 51.841 52.841 3.6291 0 0 0 0.085573 1 9702 9702 27.629 18.246 1 187 3206 125 125 261 261 0.01153498380426754 AEFYGWQDT 9 Unmodified _AEFYGWQDT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MSMS UPN47_class_I_Rep_3 4 558.2647094726562 2 558.735271 1115.45599 NaN NaN NaN NaN NaN NaN NaN 32.016 1 35.315 34.815 35.815 3.2991 0 0 0 0.39598 1 5531 5531 1.6526 0 1 + 188 21369 126 126 262 262 -0.09712003587105755 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MSMS UPN47_class_I_Rep_1 2 515.7454833984375 2 515.745639 1029.47673 NaN NaN NaN NaN NaN NaN NaN 52.195 1 55.753 55.253 56.253 3.5585 0 0 0 0.29868 1 11597 11597 10.824 2.0785 1 189 4804 127 127 263 263 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MSMS UPN47_class_I_Rep_1 2 515.74462890625 2 515.745639 1029.47673 NaN NaN NaN NaN NaN NaN NaN 52.25 1 55.809 55.309 56.309 3.5585 0 0 0 0.05227 1 11613 11613 36.127 7.0454 1 190 4804 127 127 264 264 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_2 3 515.7457885742188 2 515.745639 1029.47673 0.15862 8.181E-05 0.24768 0.00012774 0.4063 0.00020955 515.7457026793977 51.757 0.98663 55.09 54.744 55.731 3.3332 176 58 4 0 0 0 2.4394E-05 5 11515 11474;11515;11561;11607;11650 172.91 98.484 1 1469100 191 4804 127 127 265;266;267;268;269 266 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MSMS UPN47_class_I_Rep_2 3 515.7455444335938 2 515.745639 1029.47673 NaN NaN NaN NaN NaN NaN NaN 52.453 1 55.786 55.286 56.286 3.3332 0 0 0 0.10315 1 11701 11701 24.021 6.9077 1 192 4804 127 127 270 270 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MSMS UPN47_class_I_Rep_2 3 515.7459106445312 2 515.745639 1029.47673 NaN NaN NaN NaN NaN NaN NaN 52.581 1 55.914 55.414 56.414 3.3332 0 0 0 0.37476 1 11737 11737 6.7232 0.51738 1 193 4804 127 127 271 271 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_3 4 515.745849609375 2 515.745639 1029.47673 0.36386 0.00018766 0.033874 1.747E-05 0.39773 0.00020513 515.7456074067519 51.953 0.92573 55.158 54.758 55.683 3.2055 176 57 4 0 0 0 2.4394E-05 5 11571 11571;11614;11654;11692;11731 158.2 93.966 1 1309300 194 4804 127 127 272;273;274;275;276 272 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MSMS UPN47_class_I_Rep_3 4 515.7442626953125 2 515.745639 1029.47673 NaN NaN NaN NaN NaN NaN NaN 52.53 1 55.735 55.235 56.235 3.2055 0 0 0 0.05227 1 11780 11780 36.127 7.0454 1 195 4804 127 127 277 277 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MSMS UPN47_class_I_Rep_3 4 515.7459106445312 2 515.745639 1029.47673 NaN NaN NaN NaN NaN NaN NaN 53.043 1 56.238 55.738 56.738 3.1948 0 0 0 0.38639 1 11933 11933 3.9444 0.66309 1 196 4804 127 127 278 278 -0.036834132074318404 AEGDLIEHF 9 Unmodified _AEGDLIEHF_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 515.745639 1029.47673 0.16409 8.4629E-05 0.3053 0.00015746 0.46939 0.00024209 515.745748212973 51.525 1.0719 55.119 54.699 55.771 3.5932 -0.0036205 0.0001108 NaN 158.2 174 62 4 NaN NaN NaN NaN 0 NaN NaN 0 1573100 197 4804 127 127 -0.036834132074318404 AEGDLVRLL 9 Unmodified _AEGDLVRLL_ 0 0 0 ENSG00000100365|ENST00000248899|NCF4 ENSG00000100365|ENST00000248899|NCF4 ENSG00000100365|ENST00000248899|NCF4 MULTI-MSMS UPN47_class_I_Rep_1 2 493.28729248046875 2 493.287474 984.560395 0.17125 8.4476E-05 0.0080802 3.9858E-06 0.17933 8.8462E-05 493.28738720863373 61.377 0.9735 64.758 64.387 65.36 3.3815 156 71 3 0 0 0 0.0094161 3 14336 14336;14376;14419 70.332 26.56 1 924810 198 1500 128 128 279;280;281 279 0.06749742960278127 AEGDLVRLL 9 Unmodified _AEGDLVRLL_ 0 0 0 ENSG00000100365|ENST00000248899|NCF4 ENSG00000100365|ENST00000248899|NCF4 ENSG00000100365|ENST00000248899|NCF4 MULTI-MSMS UPN47_class_I_Rep_2 3 493.2874450683594 2 493.287474 984.560395 0.28967 0.00014289 -0.045368 -2.238E-05 0.2443 0.00012051 493.2873524137712 61.699 1.0597 64.958 64.566 65.626 3.2594 145 69 3 0 0 0 0.0053074 4 14514 14425;14471;14514;14554 79.596 27.966 1 574110 199 1500 128 128 282;283;284;285 284 0.06749742960278127 AEGDLVRLL 9 Unmodified _AEGDLVRLL_ 0 0 0 ENSG00000100365|ENST00000248899|NCF4 ENSG00000100365|ENST00000248899|NCF4 ENSG00000100365|ENST00000248899|NCF4 MULTI-MSMS UPN47_class_I_Rep_3 4 493.28741455078125 2 493.287474 984.560395 0.15974 7.8796E-05 0.10432 5.1459E-05 0.26405 0.00013025 493.2874318285437 61.753 1.1231 64.92 64.509 65.632 3.1667 162 79 3 0 0 0 0.0053074 4 14541 14500;14541;14582;14624 79.596 27.966 1 635570 200 1500 128 128 286;287;288;289 287 0.06749742960278127 AEGDLYLHF 9 Unmodified _AEGDLYLHF_ 0 0 0 nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 MULTI-SECPEP UPN47_class_I_Rep_1 2 532.8089599609375 2 532.756007 1063.49746 0.37385 0.00019917 0.17056 9.0867E-05 0.54441 0.00029004 532.756051673292 61.565 0.50066 64.933 64.737 65.238 3.3681 57 36 2 0 0 0 0.036318 1 14468 14468 54.774 33.027 1 77617 201 5700 129 129 290 290 -0.03174822827782009 AEGDLYLHF 9 Unmodified _AEGDLYLHF_ 0 0 0 nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 MULTI-SECPEP UPN47_class_I_Rep_2 3 532.8086547851562 2 532.756007 1063.49746 0.3147 0.00016766 0.17357 9.2472E-05 0.48827 0.00026013 532.7559400429627 61.891 0.51873 65.15 64.885 65.404 3.2594 44 34 2 0 0 0 0.11425 1 14558 14558 12.532 6.1774 1 95597 202 5700 129 129 291 291 -0.03174822827782009 AEGFHKHQ 8 Unmodified _AEGFHKHQ_ 0 0 0 L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|3|1|sense L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|3|1|sense L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 477.232177734375 2 477.233033 952.451513 -0.33731 -0.00016098 -1.3321 -0.00063571 -1.6694 -0.00079669 477.2323050868747 27.324 0.43541 31.09 30.791 31.226 3.7662 46 33 2 0 0 0 0.82752 1 4024 4024 2.3027 2.3027 1 38290 203 8613 130 130 292 292 -0.026614232193310272 AEGIHTGQF 9 Unmodified _AEGIHTGQF_ 0 0 0 ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8 ENST00000531767.1_1_8:146017155-146017514:-|nuORF ENST00000531767.1_1_8:146017155-146017514:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 480.2325439453125 2 480.232699 958.450845 -0.3131 -0.00015036 0.43912 0.00021088 0.12602 6.0521E-05 480.23279673157157 32.088 0.62191 35.801 35.457 36.079 3.7131 89 49 2 0 0 0 0.097406 4 5455 5407;5455;5496;5516 34.402 11.253 1 108870 204 3896 131 131 293;294;295;296 294 -0.030042626590443433 AEGIHTGQF 9 Unmodified _AEGIHTGQF_ 0 0 0 ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8 ENST00000531767.1_1_8:146017155-146017514:-|nuORF ENST00000531767.1_1_8:146017155-146017514:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.232177734375 2 480.232699 958.450845 -0.22271 -0.00010695 0.32363 0.00015542 0.10092 4.8467E-05 480.23276433026814 32.213 0.61025 35.668 35.447 36.057 3.4547 82 44 2 0 0 0 0.1249 2 5623 5542;5623 29.082 5.9332 1 128430 205 3896 131 131 297;298 298 -0.030042626590443433 AEGIHTGQF 9 Unmodified _AEGIHTGQF_ 0 0 0 ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8 ENST00000531767.1_1_8:146017155-146017514:-|nuORF ENST00000531767.1_1_8:146017155-146017514:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.232666015625 2 480.232699 958.450845 -0.50643 -0.00024321 0.46026 0.00022103 -0.046173 -2.2174E-05 480.2328729373443 32.473 0.75615 35.759 35.419 36.175 3.2867 89 57 2 0 0 0 0.15122 5 5698 5606;5621;5655;5698;5750 25.399 6.2058 1 127840 206 3896 131 131 299;300;301;302;303 302 -0.030042626590443433 AEGIRHVTH 9 Unmodified _AEGIRHVTH_ 0 0 0 MLT1D-int_dup112|chr2:171956550-171957669:+|2.012382514187621|0.1394906546956093|3.85|151.0|39|3|sense MLT1D-int_dup112|chr2:171956550-171957669:+|2.012382514187621|0.1394906546956093|3.85|151.0|39|3|sense MLT1D-int_dup112|chr2:171956550-171957669:+|2.012382514187621|0.1394906546956093|3.85|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.27166748046875 2 510.27269 1018.53083 -0.26117 -0.00013327 -2.0632 -0.0010528 -2.3244 -0.0011861 510.27181387681463 13.121 0.1806 16.509 16.448 16.629 3.388 27 16 3 0 0 0 0.49026 1 249 249 1.6526 0 1 42140 207 16361 132 132 304 304 0.022302237348071685 AEGLSCLPDPF 11 Unmodified _AEGLSCLPDPF_ 0 0 0 REV__L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|365|3|anti-sense REV__L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|365|3|anti-sense MSMS UPN47_class_I_Rep_1 2 574.7666015625 2 574.768257 1147.52196 NaN NaN NaN NaN NaN NaN NaN 54.428 1 57.93 57.43 58.43 3.5014 0 0 0 0.38417 1 12277 12277 5.2969 1.7004 1 + 208 29806 133 133 305 305 -0.04589930736574388 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 516.7777709960938 2 516.777274 1031.53999 -0.13514 -6.9835E-05 0.89295 0.00046145 0.75781 0.00039162 516.7777992693493 40.676 0.64757 44.348 44.032 44.679 3.6719 72 55 2 0 0 0 0.46869 1 8039 8039 3.9444 0 1 89740 209 4761 134 134 306 306 0.025485723004976535 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.779296875 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 40.803 1 44.174 43.674 44.674 3.3712 0 0 0 0.37692 1 8163 8163 6.2058 0 1 210 4761 134 134 307 307 0.025485723004976535 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.7771606445312 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 40.911 1 44.277 43.777 44.777 3.3655 0 0 0 0.37692 1 8195 8195 6.2058 0 1 211 4761 134 134 308 308 0.025485723004976535 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.7783203125 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 41.024 1 44.261 43.761 44.761 3.2372 0 0 0 0.37692 1 8280 8280 6.2058 0 1 212 4761 134 134 309 309 0.025485723004976535 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.7779541015625 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 41.169 1 44.407 43.907 44.907 3.2372 0 0 0 0.37692 1 8326 8326 6.2058 0 1 213 4761 134 134 310 310 0.025485723004976535 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.7776489257812 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 41.266 1 44.503 44.003 45.003 3.2372 0 0 0 0.37692 1 8355 8355 6.2058 0 1 214 4761 134 134 311 311 0.025485723004976535 AEGPNRLLY 9 Unmodified _AEGPNRLLY_ 0 0 0 ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4 ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.7764282226562 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 41.347 1 44.584 44.084 45.084 3.2372 0 0 0 0.31276 1 8379 8379 10.074 0 1 215 4761 134 134 312 312 0.025485723004976535 AEHFLEQQM 9 Oxidation (M) _AEHFLEQQM(Oxidation (M))_ AEHFLEQQM(1) AEHFLEQQM(68) 0 0 1 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS UPN47_class_I_Rep_1 2 574.756103515625 2 574.755681 1147.49681 -0.074029 -4.2549E-05 0.56547 0.00032501 0.49144 0.00028246 574.7559750772134 31.787 0.78061 35.516 35.158 35.939 3.7293 129 59 3 0 0 0 0.013215 3 5378 5332;5378;5416 67.838 49.692 1 257760 216 4005 135 135 313;314;315 314 126 -0.07103985539129098 AEHFLEQQM 9 Oxidation (M) _AEHFLEQQM(Oxidation (M))_ AEHFLEQQM(1) AEHFLEQQM(76) 0 0 1 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS UPN47_class_I_Rep_2 3 574.755615234375 2 574.755681 1147.49681 0.046132 2.6515E-05 0.13158 7.5625E-05 0.17771 0.00010214 574.7557293460296 31.975 0.80236 35.444 35.145 35.947 3.4691 130 57 3 0 0 0 0.0061372 2 5515 5481;5515 75.761 51.74 1 251180 217 4005 135 135 316;317 317 126 -0.07103985539129098 AEHFLEQQM 9 Oxidation (M) _AEHFLEQQM(Oxidation (M))_ AEHFLEQQM(1) AEHFLEQQM(77) 0 0 1 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS UPN47_class_I_Rep_3 4 574.7556762695312 2 574.755681 1147.49681 -0.15155 -8.7107E-05 0.33736 0.0001939 0.18581 0.00010679 574.7558935030726 32.201 0.79436 35.487 35.138 35.932 3.2867 141 58 3 0 0 0 0.0058741 2 5559 5559;5598 76.825 56.371 1 295960 218 4005 135 135 318;319 318 126 -0.07103985539129098 AEHFLEQQM 9 Unmodified _AEHFLEQQM_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MSMS UPN47_class_I_Rep_1 2 566.7583618164062 2 566.758223 1131.50189 NaN NaN NaN NaN NaN NaN NaN 41.995 1 45.674 45.174 46.174 3.6792 0 0 0 0.37891 1 8491 8491 5.7319 2.1354 1 219 4005 135 136 320 320 -0.0585968167649753 AEHFLEQQM 9 Unmodified _AEHFLEQQM_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MSMS UPN47_class_I_Rep_1 2 566.7567749023438 2 566.758223 1131.50189 NaN NaN NaN NaN NaN NaN NaN 42.089 1 45.769 45.269 46.269 3.6792 0 0 0 0.37891 1 8520 8520 5.7319 1.7875 1 220 4005 135 136 321 321 -0.0585968167649753 AEHFLEQQM 9 Unmodified _AEHFLEQQM_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MSMS UPN47_class_I_Rep_1 2 566.7583618164062 2 566.758223 1131.50189 NaN NaN NaN NaN NaN NaN NaN 42.144 1 45.823 45.323 46.323 3.6792 0 0 0 0.37891 1 8537 8537 5.7319 2.7366 1 221 4005 135 136 322 322 -0.0585968167649753 AEHFLEQQM 9 Unmodified _AEHFLEQQM_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MSMS UPN47_class_I_Rep_1 2 566.7577514648438 2 566.758223 1131.50189 NaN NaN NaN NaN NaN NaN NaN 42.29 1 45.969 45.469 46.469 3.6792 0 0 0 0.37891 1 8582 8582 5.7319 2.7366 1 222 4005 135 136 323 323 -0.0585968167649753 AEHFLEQQM 9 Unmodified _AEHFLEQQM_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS UPN47_class_I_Rep_2 3 566.7579345703125 2 566.758223 1131.50189 0.091505 5.1861E-05 0.038331 2.1724E-05 0.12984 7.3586E-05 566.7579376361447 42.437 0.49872 45.798 45.639 46.138 3.3611 46 34 2 0 0 0 0.43982 2 8650 8650;8675 5.7319 2.7366 1 68992 223 4005 135 136 324;325 324 -0.0585968167649753 AEHLQLFL 8 Unmodified _AEHLQLFL_ 0 0 0 REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|231|1|anti-sense REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|231|1|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2856140136719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 68.427 1 71.878 71.378 72.378 3.4517 0 0 0 0.40604 1 15800 15800 2.5775 0.27475 1 + 224 30470 136 137 326 326 0.04238375277122941 AEHLTSHKY 9 Unmodified _AEHLTSHKY_ 0 0 0 nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 MULTI-MSMS UPN47_class_I_Rep_1 2 543.2723388671875 2 543.272355 1084.53016 -0.084467 -4.5889E-05 -0.41683 -0.00022645 -0.5013 -0.00027234 543.2721167547145 14.397 0.26675 17.872 17.776 18.043 3.475 54 33 3 0 0 0 0.44742 1 546 546 5.2969 2.9942 1 57828 225 3624 137 138 327 327 -0.008726157049068206 AEHLTSHKY 9 Unmodified _AEHLTSHKY_ 0 0 0 nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 MULTI-MSMS UPN47_class_I_Rep_2 3 543.2723999023438 2 543.272355 1084.53016 0.012308 6.6864E-06 -0.75342 -0.00040931 -0.74111 -0.00040262 543.2720704845747 14.489 0.23335 17.877 17.783 18.016 3.3871 49 28 2 0 0 0 0.43153 1 578 578 6.2058 1.8765 1 42194 226 3624 137 138 328 328 -0.008726157049068206 AEHLTSHKY 9 Unmodified _AEHLTSHKY_ 0 0 0 nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 543.272355 1084.53016 -0.43476 -0.00023619 -0.53562 -0.00029099 -0.97037 -0.00052718 543.2722787665717 14.53 0.24067 17.9 17.817 18.058 3.3697 0.016849 -7.645E-06 NaN 6.2058 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 28658 227 3624 137 138 -0.008726157049068206 AEIDSIHQL 9 Unmodified _AEIDSIHQL_ 0 0 0 ENST00000503692.5_1_4:4422578-4426973:-|nuORF;ENSG00000168818|ENST00000306200|STX18 ENST00000503692.5_1_4:4422578-4426973:-|nuORF ENST00000503692.5_1_4:4422578-4426973:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.2664794921875 2 513.266739 1024.51892 -0.07772 -3.9891E-05 -0.012152 -6.2372E-06 -0.089872 -4.6128E-05 513.2667317454365 43.349 0.48262 47.036 46.881 47.364 3.6875 34 25 2 0 0 0 0.31407 1 8920 8920 13.042 6.8367 1 51807 228 4391 138 139 329 329 0.007645622009476938 AEIDSIHQL 9 Unmodified _AEIDSIHQL_ 0 0 0 ENST00000503692.5_1_4:4422578-4426973:-|nuORF;ENSG00000168818|ENST00000306200|STX18 ENST00000503692.5_1_4:4422578-4426973:-|nuORF ENST00000503692.5_1_4:4422578-4426973:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 513.266739 1024.51892 -0.18589 -9.541E-05 0.55802 0.00028641 0.37213 0.000191 513.2668725630068 43.692 0.40796 47.05 46.86 47.268 3.358 0.0071225 0.00038418 NaN 13.042 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 54271 229 4391 138 139 0.007645622009476938 AEIIKEDLW 9 Unmodified _AEIIKEDLW_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MULTI-MSMS UPN47_class_I_Rep_1 2 558.8004150390625 2 558.800414 1115.58628 0.42701 0.00023861 -0.17942 -0.00010026 0.2476 0.00013836 558.8002757070624 59.724 0.56746 63.122 62.861 63.429 3.3982 61 32 2 0 0 0 0.095207 5 13879 13834;13879;13922;13928;13979 34.932 12.196 1 215380 230 5275 139 140 330;331;332;333;334 331 0.033105924118899566 AEIIKEDLW 9 Unmodified _AEIIKEDLW_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MULTI-MSMS UPN47_class_I_Rep_2 3 558.800048828125 2 558.800414 1115.58628 0.4964 0.00027739 -0.37417 -0.00020908 0.12224 6.8306E-05 558.8000510469211 59.921 0.59076 63.194 63.007 63.598 3.2731 44 33 3 0 0 0 0.21414 3 13958 13958;14002;14052 19.362 6.3195 1 118270 231 5275 139 140 335;336;337 335 0.033105924118899566 AEIIKEDLW 9 Unmodified _AEIIKEDLW_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MULTI-MSMS UPN47_class_I_Rep_3 4 558.80029296875 2 558.800414 1115.58628 0.36367 0.00020322 -0.19692 -0.00011004 0.16674 9.3177E-05 558.800160666746 60.166 0.35062 63.331 63.123 63.473 3.1651 29 19 2 0 0 0 0.17979 1 14103 14103 22.658 5.5452 1 108360 232 5275 139 140 338 338 0.033105924118899566 AEIIKEDLW 9 Unmodified _AEIIKEDLW_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MSMS UPN47_class_I_Rep_3 4 558.8011474609375 2 558.800414 1115.58628 NaN NaN NaN NaN NaN NaN NaN 60.285 1 63.45 62.95 63.95 3.1651 0 0 0 0.21832 1 14146 14146 15.248 2.206 1 233 5275 139 140 339 339 0.033105924118899566 AEIKIEYFMA 10 Unmodified _AEIKIEYFMA_ 0 0 0 REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MSMS UPN47_class_I_Rep_1 2 405.54248046875 3 405.542375 1213.6053 NaN NaN NaN NaN NaN NaN NaN 36.744 1 40.413 39.913 40.913 3.6692 0 0 0 0.53105 1 6893 6893 7.9454 0 1 + 234 21371 140 141 340 340 0.007038057113277318 AEILAENALNR 11 Unmodified _AEILAENALNR_ 0 0 0 L1MD1_dup922|chr2:177531187-177533057:+|1.4185502595303172|0.126168360043596|3.49|151.0|90|1|anti-sense L1MD1_dup922|chr2:177531187-177533057:+|1.4185502595303172|0.126168360043596|3.49|151.0|90|1|anti-sense L1MD1_dup922|chr2:177531187-177533057:+|1.4185502595303172|0.126168360043596|3.49|151.0|90|1|anti-sense MSMS UPN46_class_I_Rep_3 1 607.3328247070312 2 607.330402 1212.64625 NaN NaN NaN NaN NaN NaN NaN 45.123 1 45.123 44.623 45.623 0 0 0 0 0.38417 1 9146 9146 4.1895 1.1943 1 235 11978 141 142 341 341 0.04843283075138061 AEILLSNHY 9 Unmodified _AEILLSNHY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN47_class_I_Rep_1 2 530.2770385742188 2 530.277106 1058.53966 0.097547 5.1727E-05 -0.60262 -0.00031955 -0.50507 -0.00026783 530.2769954091252 46.37 0.889 50.07 49.646 50.535 3.6999 141 59 3 0 0 0 0.0060693 5 9824 9785;9824;9867;9907;9960 82.529 44.555 1 657200 236 2735 142 143 342;343;344;345;346 343 0.012731525806202626 AEILLSNHY 9 Unmodified _AEILLSNHY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN47_class_I_Rep_2 3 530.2771606445312 2 530.277106 1058.53966 0.076056 4.0331E-05 -0.61593 -0.00032661 -0.53987 -0.00028628 530.2770029353229 46.688 0.88023 50.039 49.697 50.577 3.3515 150 63 3 0 0 0 0.0060693 5 9957 9920;9957;9998;10044;10092 82.529 44.555 1 564840 237 2735 142 143 347;348;349;350;351 348 0.012731525806202626 AEILLSNHY 9 Unmodified _AEILLSNHY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 530.277106 1058.53966 0.25694 0.00013625 -0.78738 -0.00041753 -0.53044 -0.00028128 530.2768979739689 46.812 0.91127 50.056 49.683 50.594 3.2439 0.0010747 -0.00011567 NaN 82.529 138 56 3 NaN NaN NaN NaN 0 NaN NaN 0 580520 238 2735 142 143 0.012731525806202626 AEILQTGEFI 10 Unmodified _AEILQTGEFI_ 0 0 0 MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.7978515625 2 560.797872 1119.58119 0.36088 0.00020238 -0.1399 -7.8457E-05 0.22097 0.00012392 560.7977186247037 55.875 1.1935 59.353 58.902 60.096 3.4785 124 68 2 0 0 0 0.30625 1 12650 12650 31.268 0 1 1280900 239 16595 143 144 352 352 0.02618288549274439 AEILQTGEFI 10 Unmodified _AEILQTGEFI_ 0 0 0 MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.7982177734375 2 560.797872 1119.58119 0.5183 0.00029066 -0.28619 -0.00016049 0.23211 0.00013017 560.7976228695071 56.108 1.0646 59.409 58.92 59.984 3.3009 116 62 2 0 0 0 0.30625 2 12931 12931;12976 31.268 0 1 1083800 240 16595 143 144 353;354 353 0.02618288549274439 AEILQTGEFI 10 Unmodified _AEILQTGEFI_ 0 0 0 MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 561.2327270507812 2 560.797872 1119.58119 0.5183 0.00029066 -0.28619 -0.00016049 0.23211 0.00013017 560.7976228695071 56.108 1.0646 59.409 58.92 59.984 3.3009 116 62 2 0 0 0 0.84575 1 12970 12970 14.405 0 1 1083800 241 16595 143 144 355 355 0.02618288549274439 AEILQTGEFI 10 Unmodified _AEILQTGEFI_ 0 0 0 MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MSTD_dup2962|chr6:15501556-15501688:-|1.16524871003731|0.0793036500185737|3.88|151.0|9|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.7978515625 2 560.797872 1119.58119 0.39909 0.00022381 -0.21307 -0.00011949 0.18603 0.00010432 560.7976914983144 56.239 1.0597 59.411 58.977 60.036 3.1721 131 69 2 0 0 0 0.34027 2 13040 13040;13084 24.991 0 1 1247000 242 16595 143 144 356;357 356 0.02618288549274439 AEINNIIKI 9 Unmodified _AEINNIIKI_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_2 3 514.3109741210938 2 514.310949 1026.60735 0.17689 9.0977E-05 0.22621 0.00011634 0.4031 0.00020732 514.3110038566966 58.449 0.8362 61.731 61.426 62.262 3.2818 84 48 2 0 0 0 0.066364 2 13536 13536;13583 41.956 3.78 1 178950 243 1166;2720;33467 144 145 358;359 358 0.09510602511409161 AEINNIIKI 9 Unmodified _AEINNIIKI_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_3 4 514.3111572265625 2 514.310949 1026.60735 0.17384 8.9407E-05 -0.020896 -1.0747E-05 0.15294 7.866E-05 514.3109332754361 58.593 0.84986 61.759 61.419 62.269 3.1658 100 51 3 0 0 0 0.095207 1 13654 13654 34.932 3.6637 1 205300 244 1166;2720;33467 144 145 360 360 0.09510602511409161 AEITDKLGL 9 Unmodified _AEITDKLGL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 480.2742614746094 2 480.274032 958.533512 0.0098888 4.7493E-06 -0.45143 -0.00021681 -0.44154 -0.00021206 480.2739543906561 50.983 0.71586 54.576 54.297 55.013 3.5933 76 34 3 0 0 0 0.13455 1 11225 11225 27.223 4.487 1 146590 245 2843 145 146 361 361 0.05258634349092972 AEITDKLGL 9 Unmodified _AEITDKLGL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.2737731933594 2 480.274032 958.533512 0.22616 0.00010862 -0.38801 -0.00018635 -0.16185 -7.7733E-05 480.2737519934757 51.332 0.67124 54.67 54.316 54.987 3.3386 63 33 2 0 0 0 0.21414 1 11290 11290 19.362 2.249 1 155260 246 2843 145 146 362 362 0.05258634349092972 AEITDKLGL 9 Unmodified _AEITDKLGL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.2741394042969 2 480.274032 958.533512 0.18384 8.8293E-05 -0.1155 -5.5471E-05 0.068338 3.2821E-05 480.27387128734284 51.362 0.75747 54.579 54.265 55.023 3.2163 70 39 2 0 0 0 0.12795 2 11421 11377;11421 28.495 5.7582 1 95100 247 2843 145 146 363;364 364 0.05258634349092972 AEITDKLGL 9 Unmodified _AEITDKLGL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 480.2740783691406 2 480.274032 958.533512 0.12738 6.1178E-05 0.026079 1.2525E-05 0.15346 7.3703E-05 480.2739722923585 51.139 0.68062 54.664 54.381 55.062 3.5246 95 43 3 0 0 0 0.026395 2 10552 10505;10552 59.368 17.529 1 497240 248 2843 145 146 365;366 366 0.05258634349092972 AEITDKLGL 9 Unmodified _AEITDKLGL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 480.274169921875 2 480.274032 958.533512 0.22813 0.00010957 0.11755 5.6458E-05 0.34569 0.00016602 480.2739403128761 51.098 0.62907 54.766 54.404 55.033 3.6679 89 38 3 0 0 0 0.033731 3 10487 10445;10487;10534 55.503 11.644 1 375030 249 2843 145 146 367;368;369 368 0.05258634349092972 AEITDKLGL 9 Unmodified _AEITDKLGL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 480.274169921875 2 480.274032 958.533512 0.10345 4.9684E-05 0.12943 6.2161E-05 0.23288 0.00011184 480.2740242051003 51.142 0.55712 54.752 54.505 55.062 3.6105 86 38 3 0 0 0 0.05757 2 10480 10439;10480 45.74 14.684 1 464650 250 2843 145 146 370;371 371 0.05258634349092972 AEIVEGENHTY 11 Unmodified _AEIVEGENHTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000474358.5_1_X:153580213-153581146:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MSMS UPN47_class_I_Rep_3 4 631.2886962890625 2 631.288399 1260.56225 NaN NaN NaN NaN NaN NaN NaN 32.718 1 36.004 35.504 36.504 3.2867 0 0 0 0.38417 1 5745 5745 2.2828 0.63015 1 251 5336 146 147 372 372 -0.05761292812417196 AEIVTGPELW 10 Unmodified _AEIVTGPELW_ 0 0 0 REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 557.7916259765625 2 557.792589 1113.57063 0.31894 0.0001779 -0.065557 -3.6567E-05 0.25338 0.00014133 557.7922475051321 52.704 0.45975 56.263 56.113 56.573 3.5585 38 23 2 0 0 0 0.52083 1 11801 11801 9.3831 1.2276 1 78973 + 252 22869 147 148 373 373 0.01838305894852965 AEKAYHEQL 9 Unmodified _AEKAYHEQL_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_1 2 544.7720336914062 2 544.772188 1087.52982 -0.060378 -3.2893E-05 -0.13529 -7.3705E-05 -0.19567 -0.0001066 544.77204004624 18.604 1.5803 22.185 21.586 23.167 3.5806 427 188 3 0 0 0 0.016336 13 1607 1457;1480;1514;1545;1576;1607;1637;1667;1694;1721;1752;1773;1785 101.54 51.989 1 316900 253 2425;4314;7292 148 149 374;375;376;377;378;379;380;381;382;383;384;385;386 379 -0.010440354247748473 AEKAYHEQL 9 Unmodified _AEKAYHEQL_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 544.7719116210938 2 544.772188 1087.52982 0.016604 9.0451E-06 -0.11051 -6.0201E-05 -0.093903 -5.1156E-05 544.7720455164016 19.054 1.4466 22.444 21.981 23.427 3.3898 356 151 3 0 0 0 0.034368 10 1742 1610;1640;1672;1706;1742;1778;1812;1845;1866;1887 55.249 34.668 1 267300 254 2425;4314;7292 148 149 387;388;389;390;391;392;393;394;395;396 391 -0.010440354247748473 AEKAYHEQL 9 Unmodified _AEKAYHEQL_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_3 4 544.7720947265625 2 544.772188 1087.52982 -0.36068 -0.00019649 0.30379 0.0001655 -0.056888 -3.0991E-05 544.7722484935242 19.352 1.5663 22.704 22.082 23.648 3.3514 332 154 3 0 0 0 0.0085073 10 1743 1670;1705;1743;1774;1808;1847;1879;1915;1953;1957 104.48 39.66 1 229260 255 2425;4314;7292 148 149 397;398;399;400;401;402;403;404;405;406 399 -0.010440354247748473 AEKGTETKM 9 Unmodified _AEKGTETKM_ 0 0 0 REV__Tigger1_dup5765|chr7:92376749-92377634:-|1.3321493655660486|0.0404748154584541|5.04|150.0|10|1|sense REV__Tigger1_dup5765|chr7:92376749-92377634:-|1.3321493655660486|0.0404748154584541|5.04|150.0|10|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 497.2463684082031 2 497.747324 993.480096 -0.29409 -0.00014638 3.3969 0.0016908 3.1028 0.0015444 497.74795125135756 14.576 0.146 14.576 14.495 14.641 0 22 17 2 0 0 0 0.1249 1 660 660 1.4819 0.28856 1 25882 + 256 32480 149 150 407 407 -0.01690486425081872 AEKLITQTF 9 Unmodified _AEKLITQTF_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS UPN47_class_I_Rep_1 2 525.7954711914062 2 525.795132 1049.57571 0.064278 3.3797E-05 -0.27465 -0.00014441 -0.21037 -0.00011061 525.794910046587 46.017 0.69581 49.716 49.361 50.057 3.6999 82 36 3 0 0 0 0.08914 4 9747 9672;9747;9800;9818 36.395 12.594 1 213700 257 1347 150 151 408;409;410;411 409 0.05290609757457787 AEKLITQTF 9 Unmodified _AEKLITQTF_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS UPN47_class_I_Rep_2 3 525.7950439453125 2 525.795132 1049.57571 -0.063643 -3.3463E-05 -0.10517 -5.5296E-05 -0.16881 -8.8759E-05 525.7949799359363 46.417 0.7978 49.768 49.433 50.231 3.3515 117 58 3 0 0 0 0.12306 2 9910 9803;9910 29.437 11.995 1 155210 258 1347 150 151 412;413 413 0.05290609757457787 AEKLITQTF 9 Unmodified _AEKLITQTF_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS UPN47_class_I_Rep_3 4 525.7953491210938 2 525.795132 1049.57571 0.20934 0.00011007 -0.36029 -0.00018944 -0.15095 -7.9368E-05 525.7949326083925 46.51 0.7744 49.754 49.405 50.179 3.2439 88 51 2 0 0 0 0.077454 4 9924 9924;9991;10042;10062 39.213 13.192 1 176440 259 1347 150 151 414;415;416;417 414 0.05290609757457787 AEKRQLFIE 9 Unmodified _AEKRQLFIE_ 0 0 0 ENST00000493538.5_1_2:25803688-25875529:-|nuORF;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB ENST00000493538.5_1_2:25803688-25875529:-|nuORF ENST00000493538.5_1_2:25803688-25875529:-|nuORF MSMS UPN47_class_I_Rep_3 4 567.3187255859375 2 567.319306 1132.62406 NaN NaN NaN NaN NaN NaN NaN 45.844 1 49.088 48.588 49.588 3.2441 0 0 0 0.39036 1 9752 9752 2.9952 0.26005 1 260 3064 151 152 418 418 0.06305103397380662 AEKRQLFIE 9 Unmodified _AEKRQLFIE_ 0 0 0 ENST00000493538.5_1_2:25803688-25875529:-|nuORF;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB ENST00000493538.5_1_2:25803688-25875529:-|nuORF ENST00000493538.5_1_2:25803688-25875529:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 567.3177490234375 2 567.319306 1132.62406 0.39979 0.00022681 -0.31613 -0.00017935 0.083655 4.7459E-05 567.3190615782225 45.83 0.77603 49.588 49.175 49.951 3.7579 97 57 2 0 0 0 0.47763 2 8794 8794;8999 2.9952 1.151 1 172590 261 3064 151 152 419;420 419 0.06305103397380662 AEKRQLFIE 9 Unmodified _AEKRQLFIE_ 0 0 0 ENST00000493538.5_1_2:25803688-25875529:-|nuORF;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB ENST00000493538.5_1_2:25803688-25875529:-|nuORF ENST00000493538.5_1_2:25803688-25875529:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 567.31884765625 2 567.319306 1132.62406 0.36984 0.00020982 -0.17237 -9.7789E-05 0.19747 0.00011203 567.3191446277219 45.892 0.82178 49.528 49.193 50.015 3.6369 94 59 2 0 0 0 0.39745 1 8882 8882 8.1555 1.0538 1 148750 262 3064 151 152 421 421 0.06305103397380662 AELAAERYH 9 Unmodified _AELAAERYH_ 0 0 0 nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2 nc|ENSG00000173898|O15020-2|SPTBN2 nc|ENSG00000173898|O15020-2|SPTBN2 MSMS UPN47_class_I_Rep_2 3 530.2769775390625 2 530.26453 1058.51451 NaN NaN NaN NaN NaN NaN NaN 46.439 1 49.79 49.29 50.29 3.3515 0 0 0 0.28335 1 9879 9879 11.64 0 1 263 4653 152 153 422 422 -0.012409022219571852 AELGWFPLDV 10 Unmodified _AELGWFPLDV_ 0 0 0 REV__THE1B-int_dup3003|chr10:75831347-75832617:-|1.3383257480003994|0.0172059141850824|6.28|148.0|47|2|anti-sense REV__THE1B-int_dup3003|chr10:75831347-75832617:-|1.3383257480003994|0.0172059141850824|6.28|148.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7965087890625 2 573.795132 1145.57571 0.33164 0.00019029 0.13384 7.6797E-05 0.46548 0.00026709 573.7956964018227 55.658 0.57175 59.136 58.845 59.416 3.4785 77 34 3 0 0 0 0.56078 1 12610 12610 3.2813 0.28607 1 100730 + 264 32256 153 154 423 423 0.008746097574658052 AELKQGNHY 9 Unmodified _AELKQGNHY_ 0 0 0 REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense MSMS UPN47_class_I_Rep_1 2 530.2771606445312 2 530.26453 1058.51451 NaN NaN NaN NaN NaN NaN NaN 46.072 1 49.771 49.271 50.271 3.6999 0 0 0 0.28335 1 9738 9738 11.64 3.7301 1 + 265 28892 154 155 424 424 -0.012409022219344479 AELKQGNHY 9 Unmodified _AELKQGNHY_ 0 0 0 REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense MSMS UPN47_class_I_Rep_3 4 530.2767333984375 2 530.26453 1058.51451 NaN NaN NaN NaN NaN NaN NaN 46.526 1 49.77 49.27 50.27 3.2439 0 0 0 0.28335 1 9961 9961 11.64 2.2572 1 + 266 28892 154 155 425 425 -0.012409022219344479 AELKQGNHY 9 Unmodified _AELKQGNHY_ 0 0 0 REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense MSMS UPN47_class_I_Rep_3 4 530.2769165039062 2 530.26453 1058.51451 NaN NaN NaN NaN NaN NaN NaN 46.544 1 49.788 49.288 50.288 3.2439 0 0 0 0.28335 1 9967 9967 11.64 2.2572 1 + 267 28892 154 155 426 426 -0.012409022219344479 AELKQGNHY 9 Unmodified _AELKQGNHY_ 0 0 0 REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|34|1|sense MSMS UPN47_class_I_Rep_3 4 530.2769775390625 2 530.26453 1058.51451 NaN NaN NaN NaN NaN NaN NaN 46.67 1 49.914 49.414 50.414 3.2439 0 0 0 0.19137 1 10006 10006 16.942 3.0362 1 + 268 28892 154 155 427 427 -0.012409022219344479 AELLPYLQSD 10 Unmodified _AELLPYLQSD_ 0 0 0 REV__L1PA5_dup5242|chr7:114990351-114995897:-|5.052159401470676|0.1464154544109933|5.11|151.0|131|3|sense REV__L1PA5_dup5242|chr7:114990351-114995897:-|5.052159401470676|0.1464154544109933|5.11|151.0|131|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7951049804688 2 574.795329 1147.5761 0.41878 0.00024071 -0.030905 -1.7764E-05 0.38788 0.00022295 574.7952615393641 55.632 0.65146 58.81 58.491 59.143 3.1779 91 40 3 0 0 0 0.34027 1 12722 12722 24.991 0 1 170450 + 269 29777 155 156 428 428 0.008219846866495573 AELLSRLF 8 Unmodified _AELLSRLF_ 0 0 0 REV__MSTB1_dup2389|chr9:100158721-100159151:+|1.1608888647424005|0.0272037529362969|5.42|151.0|10|2|sense REV__MSTB1_dup2389|chr9:100158721-100159151:+|1.1608888647424005|0.0272037529362969|5.42|151.0|10|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 475.23492431640625 2 474.779285 947.544017 0.18927 8.9862E-05 -0.96557 -0.00045843 -0.7763 -0.00036857 474.77888400605536 57.889 0.30074 61.18 61.057 61.358 3.2912 28 22 2 0 0 0 0.72333 1 13387 13387 8.5933 0 1 62038 + 270 31900 156 157 429 429 0.06814661794180665 AELLSRLF 8 Unmodified _AELLSRLF_ 0 0 0 REV__MSTB1_dup2389|chr9:100158721-100159151:+|1.1608888647424005|0.0272037529362969|5.42|151.0|10|2|sense REV__MSTB1_dup2389|chr9:100158721-100159151:+|1.1608888647424005|0.0272037529362969|5.42|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 474.7784423828125 2 474.779285 947.544017 NaN NaN NaN NaN NaN NaN NaN 57.856 1 61.024 60.524 61.524 3.1681 0 0 0 0.3903 1 13400 13400 11.64 0 1 + 271 31900 156 157 430 430 0.06814661794180665 AELLTIAESW 10 Unmodified _AELLTIAESW_ 0 0 0 L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 566.7459716796875 2 566.797872 1131.58119 0.40696 0.00023066 -0.58198 -0.00032986 -0.17502 -9.92E-05 566.7975498768105 59.736 0.58253 63.134 62.861 63.444 3.3982 45 33 2 0 0 0 0.84575 1 13823 13823 3.2813 0 1 76020 272 15318 157 158 431 431 0.020662885492811256 AELLTIAESW 10 Unmodified _AELLTIAESW_ 0 0 0 L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.797607421875 2 566.797872 1131.58119 0.49519 0.00028067 -0.41974 -0.00023791 0.075449 4.2764E-05 566.7974435589471 60.059 0.5444 63.333 63.02 63.565 3.2731 39 29 2 0 0 0 0.54822 1 13975 13975 5.7319 0.83484 1 46006 273 15318 157 158 432 432 0.020662885492811256 AELLTIAESW 10 Unmodified _AELLTIAESW_ 0 0 0 L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.7978515625 2 566.797872 1131.58119 0.36304 0.00020577 -0.16677 -9.4524E-05 0.19627 0.00011124 566.7975344192271 59.997 0.28027 63.162 63.046 63.326 3.1651 22 14 2 0 0 0 0.52562 1 14100 14100 8.7454 0.83525 1 38083 274 15318 157 158 433 433 0.020662885492811256 AELLTIAESW 10 Unmodified _AELLTIAESW_ 0 0 0 L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|123|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 566.7452392578125 2 566.797872 1131.58119 0.36304 0.00020577 -0.16677 -9.4524E-05 0.19627 0.00011124 566.7975344192271 59.997 0.28027 63.162 63.046 63.326 3.1651 22 14 2 0 0 0 0.84575 1 14047 14047 8.7454 1.1365 1 38083 275 15318 157 158 434 434 0.020662885492811256 AELNLNIKI 9 Unmodified _AELNLNIKI_ 0 0 0 REV__L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|16|1|sense REV__L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.3111572265625 2 514.310949 1026.60735 0.26579 0.0001367 0.0035743 1.8383E-06 0.26937 0.00013854 514.3109079692863 58.232 0.79309 61.669 61.342 62.135 3.437 81 50 2 0 0 0 0.053261 2 13446 13446;13491 47.594 0 1 216710 + 276 28522 158 159 435;436 435 0.09510602511409161 AELNLNIKI 9 Unmodified _AELNLNIKI_ 0 0 0 REV__L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|16|1|sense REV__L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|16|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 514.310949 1026.60735 0.26579 0.0001367 0.0035743 1.8383E-06 0.26937 0.00013854 514.3109079692863 58.232 0.79309 61.669 61.342 62.135 3.437 -0.050319 -8.0109E-05 NaN 47.594 81 50 2 NaN NaN NaN NaN 0 NaN NaN 0 216710 + 277 28522 158 159 0.09510602511409161 AELQKFEHC 9 Unmodified _AELQKFEHC_ 0 0 0 REV__MSTA1_dup205|chr7:149247808-149248221:-|1.015092477824994|0.2148939098037244|2.24|151.0|12|3|sense REV__MSTA1_dup205|chr7:149247808-149248221:-|1.015092477824994|0.2148939098037244|2.24|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 552.7984619140625 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 25.845 1 29.611 29.111 30.111 3.7663 0 0 0 0.39518 1 3201 3201 1.8442 1.0506 1 + 278 31886 159 160 437 437 -0.040633778138726484 AELSLFMLCHC 11 Unmodified _AELSLFMLCHC_ 0 0 0 REV__Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|37|3|anti-sense REV__Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|37|3|anti-sense MSMS UPN48_class_I_Rep_1 5 633.789794921875 2 633.787612 1265.56067 NaN NaN NaN NaN NaN NaN NaN 23.597 1 27.163 26.663 27.663 3.5655 0 0 0 0.38417 1 2484 2484 1.4819 0 1 + 279 17286 160 161 438 438 -0.061486646980029036 AELYTKNF 8 Unmodified _AELYTKNF_ 0 0 0 ENST00000280969.9_1_5:162930392-162940570:+|nuORF;ENST00000519719.1_1_5:162930404-162939341:+|nuORF ENST00000280969.9_1_5:162930392-162940570:+|nuORF ENST00000280969.9_1_5:162930392-162940570:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 493.25341796875 2 493.2531 984.491647 0.15569 7.6795E-05 -0.19758 -9.7455E-05 -0.041887 -2.0661E-05 493.25294910840574 38.094 0.58644 41.754 41.546 42.133 3.6595 73 54 2 0 0 0 0.82752 1 6535 6535 8.5933 0 1 84370 280 6028 161 162 439 439 -0.001219213394392682 AEMIKGKG 8 Unmodified _AEMIKGKG_ 0 0 0 REV__L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|6|1|sense REV__L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 416.7562255859375 2 417.231113 832.447674 NaN NaN NaN NaN NaN NaN NaN 39.462 1 39.462 38.962 39.962 0 0 0 0 0.40625 1 7586 7586 2.3027 1.5091 1 + 281 26544 162 163 440 440 0.024747709625899006 AENDRISF 8 Unmodified _AENDRISF_ 0 0 0 L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|41|3|anti-sense;L1MA4_dup2332|chr4:39860495-39860787:+|1.300430480862524|0.0040963956296225|8.31|150.0|22|3|anti-sense L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|41|3|anti-sense L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.2425537109375 2 476.230156 950.445759 -0.2666 -0.00012696 0.15403 7.3355E-05 -0.11257 -5.3607E-05 476.2302059297086 28.375 0.58151 31.873 31.643 32.225 3.4986 64 48 2 0 0 0 0.82752 1 4482 4482 9.3474 9.3474 1 79646 282 9663 163 164 441 441 -0.03144566521655179 AENFQSIL 8 Unmodified _AENFQSIL_ 0 0 0 L1PBa1_dup78|chr3:158500001-158504406:-|1.3679421168972656|0.1037467581300652|3.72|151.0|174|1|anti-sense L1PBa1_dup78|chr3:158500001-158504406:-|1.3679421168972656|0.1037467581300652|3.72|151.0|174|1|anti-sense L1PBa1_dup78|chr3:158500001-158504406:-|1.3679421168972656|0.1037467581300652|3.72|151.0|174|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 460.78253173828125 2 461.23745 920.460347 0.045978 2.1207E-05 0.038424 1.7722E-05 0.084402 3.8929E-05 461.23742799740216 109.22 0.35458 112.85 112.72 113.08 3.6321 71 43 2 0 0 0 0.72333 1 26555 26555 0.6015 0.6015 1 3957800 283 15405 164 165 442 442 -0.003064943735239467 AENGLTVRL 9 Unmodified _AENGLTVRL_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1;GTF3C1|p.Q1157L|1|0.28|ENSG00000077235|chr16:27488595-27488595|T/A|missense_variant ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MSMS UPN47_class_I_Rep_1 2 486.77685546875 2 486.777274 971.539994 NaN NaN NaN NaN NaN NaN NaN 44.754 1 48.454 47.954 48.954 3.6999 0 0 0 0.37891 1 9335 9335 5.7319 0 1 284 1169 165 166 443 443 0.053085723004642205 AENISRVLY 9 Unmodified _AENISRVLY_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN47_class_I_Rep_1 2 532.7904663085938 2 532.790381 1063.56621 0.055362 2.9496E-05 0.16482 8.7815E-05 0.22018 0.00011731 532.7904407861233 44.285 0.92091 47.98 47.643 48.564 3.6951 150 63 3 0 0 0 0.034404 5 9221 9142;9183;9221;9256;9338 55.235 31.214 1 459480 285 1510;1545 166 167 444;445;446;447;448 446 0.03696841471969492 AENISRVLY 9 Unmodified _AENISRVLY_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN47_class_I_Rep_2 3 532.79052734375 2 532.790381 1063.56621 0.056341 3.0018E-05 0.29665 0.00015805 0.35299 0.00018807 532.7904524039924 44.647 1.0929 48.002 47.609 48.702 3.3556 173 70 4 0 0 0 0.026894 6 9299 9260;9299;9339;9382;9439;9442 59.052 31.424 1 458330 286 1510;1545 166 167 449;450;451;452;453;454 450 0.03696841471969492 AENISRVLY 9 Unmodified _AENISRVLY_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN47_class_I_Rep_3 4 532.7903442382812 2 532.790381 1063.56621 0.16753 8.926E-05 0.23501 0.00012521 0.40254 0.00021447 532.7904439548571 44.79 0.89496 48.034 47.677 48.572 3.2441 130 55 3 0 0 0 0.052941 6 9388 9348;9388;9426;9466;9503;9520 47.732 23.711 1 575040 287 1510;1545 166 167 455;456;457;458;459;460 456 0.03696841471969492 AENLEKRL 8 Unmodified _AENLEKRL_ 0 0 0 L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|124|3|sense;L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|80|2|sense;L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|133|3|sense L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|124|3|sense L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|124|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.77655029296875 2 486.777274 971.539994 0.022611 1.1007E-05 -0.24591 -0.0001197 -0.2233 -0.0001087 486.7770819534606 45.289 0.52262 48.643 48.406 48.929 3.3534 36 29 2 0 0 0 0.82752 1 9502 9502 6.7232 0.99131 1 54931 288 14468 167 168 461 461 0.053085723004642205 AENTLSKLL 9 Unmodified _AENTLSKLL_ 0 0 0 ENSG00000198876|ENST00000361264|DCAF12 ENSG00000198876|ENST00000361264|DCAF12 ENSG00000198876|ENST00000361264|DCAF12 MULTI-MSMS UPN47_class_I_Rep_2 3 494.7870178222656 2 494.787307 987.560061 0.33045 0.0001635 -0.070975 -3.5118E-05 0.25947 0.00012838 494.7873776837182 51.572 0.55856 54.911 54.685 55.243 3.3386 43 27 2 0 0 0 0.16799 1 11425 11425 23.79 3.3752 1 115640 289 5477 168 169 462 462 0.06578323240421469 AENTLSKLL 9 Unmodified _AENTLSKLL_ 0 0 0 ENSG00000198876|ENST00000361264|DCAF12 ENSG00000198876|ENST00000361264|DCAF12 ENSG00000198876|ENST00000361264|DCAF12 MULTI-MATCH UPN47_class_I_Rep_1 2 2 494.787307 987.560061 0.048573 2.4033E-05 0.66589 0.00032948 0.71447 0.00035351 494.78759908542924 51.311 0.59585 54.904 54.639 55.235 3.5932 -0.031259 0.00057573 NaN 23.79 43 29 2 NaN NaN NaN NaN 0 NaN NaN 0 104520 290 5477 168 169 0.06578323240421469 AEPEDHYFL 9 Unmodified _AEPEDHYFL_ 0 0 0 ENST00000541653.2_1_14:22054224-22054383:-|nuORF;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3 ENST00000541653.2_1_14:22054224-22054383:-|nuORF ENST00000541653.2_1_14:22054224-22054383:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 560.7507934570312 2 560.750921 1119.48729 0.45716 0.00025635 -0.019203 -1.0768E-05 0.43795 0.00024558 560.7508167469894 50.472 0.83376 53.996 53.668 54.501 3.5246 136 52 3 0 0 0 0.20276 3 10298 10298;10341;10382 20.454 13.164 1 302610 291 2107 169 170 463;464;465 463 -0.06767430553009035 AEPEDHYFL 9 Unmodified _AEPEDHYFL_ 0 0 0 ENST00000541653.2_1_14:22054224-22054383:-|nuORF;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3 ENST00000541653.2_1_14:22054224-22054383:-|nuORF ENST00000541653.2_1_14:22054224-22054383:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 560.7510986328125 2 560.750921 1119.48729 0.4649 0.00026069 -0.25646 -0.00014381 0.20843 0.00011688 560.7507126856093 50.329 0.81322 54.023 53.679 54.492 3.6946 106 51 3 0 0 0 0.26948 3 10262 10262;10304;10340 15.847 9.124 1 262890 292 2107 169 170 466;467;468 466 -0.06767430553009035 AEPEDHYFL 9 Unmodified _AEPEDHYFL_ 0 0 0 ENST00000541653.2_1_14:22054224-22054383:-|nuORF;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENSG00000115091|ENST00000263238|ACTR3 ENST00000541653.2_1_14:22054224-22054383:-|nuORF ENST00000541653.2_1_14:22054224-22054383:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 560.7512817382812 2 560.750921 1119.48729 0.31023 0.00017396 0.42095 0.00023605 0.73117 0.00041001 560.7510021903931 50.547 0.7457 54.168 53.769 54.515 3.621 109 45 3 0 0 0 0.26948 4 10303 10221;10262;10303;10350 15.847 9.6414 1 303440 293 2107 169 170 469;470;471;472 471 -0.06767430553009035 AEPHPSTVLF 10 Unmodified _AEPHPSTVLF_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|41|1|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|41|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.2843627929688 2 549.284931 1096.55531 0.31056 0.00017058 -0.31342 -0.00017215 -0.0028592 -1.5705E-06 549.2848645177991 46.784 0.9126 50.027 49.73 50.642 3.2439 129 56 3 0 0 0 0.54466 1 10203 10203 6.2058 0 1 252050 + 294 31196 170 171 473 473 0.010894390976545765 AEPMEPVPIGG 11 Unmodified _AEPMEPVPIGG_ 0 0 0 REV__ENST00000397881.7_2_19:10197589-10201972:+|nuORF REV__ENST00000397881.7_2_19:10197589-10201972:+|nuORF MSMS UPN47_class_I_Rep_1 2 548.7720336914062 2 548.7708 1095.52705 NaN NaN NaN NaN NaN NaN NaN 81.019 1 84.507 84.007 85.007 3.4874 0 0 0 0.38417 1 20203 20203 3.2813 0.70383 1 + 295 22133 171 172 474 474 -0.01689626873940142 AEPPYIIR 8 Unmodified _AEPPYIIR_ 0 0 0 REV__nc|ENSG00000144857|Q9BWV1|BOC REV__nc|ENSG00000144857|Q9BWV1|BOC MSMS UPN47_class_I_Rep_2 3 479.7692565917969 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 37.552 1 40.951 40.451 41.451 3.3988 0 0 0 0.40404 1 7173 7173 5.2307 0 1 + 296 19499 172 173 475 475 0.04790375277138992 AEPTQLSGLSS 11 Unmodified _AEPTQLSGLSS_ 0 0 0 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN47_class_I_Rep_1 2 545.2748413085938 2 545.274761 1088.53497 -0.060965 -3.3243E-05 -1.851 -0.0010093 -1.912 -0.0010426 545.273661363994 18.093 0.048563 21.643 21.608 21.657 3.5504 8 5 2 0 0 0 0.67398 1 1446 1446 1.0715 0.38109 1 15330 + 297 18309 173 174 476 476 -0.005757763527981297 AEQDFISKF 9 Unmodified _AEQDFISKF_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000504321.1_1_4:56755058-56759725:+|nuORF;ENST00000511971.5_1_4:56749994-56766742:+|nuORF nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MSMS UPN47_class_I_Rep_1 2 542.7696533203125 2 542.769114 1083.52368 0.33653 0.00018266 0.168 9.1188E-05 0.50454 0.00027385 542.7691055407375 52.685 0.49079 56.244 56.068 56.559 3.5585 36 25 2 0 0 0 0.20144 3 11757 11741;11757;11773 20.581 8.0494 1 91088 298 1361 174 175 477;478;479 478 -0.014745536562713824 AEQDFISKF 9 Unmodified _AEQDFISKF_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000504321.1_1_4:56755058-56759725:+|nuORF;ENST00000511971.5_1_4:56749994-56766742:+|nuORF nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MSMS UPN47_class_I_Rep_3 4 542.76953125 2 542.769114 1083.52368 0.47365 0.00025708 -0.23458 -0.00012732 0.23907 0.00012976 542.7689516808019 53.087 0.49314 56.282 56.171 56.664 3.1948 38 24 2 0 0 0 0.15661 2 12000 11954;12000 24.882 11.839 1 148010 299 1361 174 175 480;481 481 -0.014745536562713824 AEQDFISKF 9 Unmodified _AEQDFISKF_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000504321.1_1_4:56755058-56759725:+|nuORF;ENST00000511971.5_1_4:56749994-56766742:+|nuORF nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 542.769114 1083.52368 0.47894 0.00025996 -0.13993 -7.595E-05 0.33901 0.00018401 542.7691222881497 52.986 0.53535 56.312 56.129 56.665 3.3266 0.032955 1.0628E-06 NaN 24.882 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 65725 300 1361 174 175 -0.014745536562713824 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENSG00000125124|ENST00000245157|BBS2 ENST00000561853.1_1_16:56536201-56536626:-|nuORF ENST00000561853.1_1_16:56536201-56536626:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 543.79248046875 2 543.793121 1085.57169 0.34803 0.00018926 0.11475 6.2402E-05 0.46279 0.00025166 543.7931193622782 53.01 0.6995 56.569 56.322 57.021 3.5585 59 43 2 0 0 0 0.13525 4 11853 11818;11853;11871;11904 27.088 2.8784 1 127730 301 2494 175 176 482;483;484;485 483 0.032325202637593975 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENSG00000125124|ENST00000245157|BBS2 ENST00000561853.1_1_16:56536201-56536626:-|nuORF ENST00000561853.1_1_16:56536201-56536626:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 543.7932739257812 2 543.793121 1085.57169 0.48215 0.00026219 -0.56624 -0.00030792 -0.084088 -4.5726E-05 543.792786624962 53.358 0.60165 56.685 56.44 57.041 3.3266 61 38 2 0 0 0 0.1003 1 11999 11999 33.821 11.046 1 120980 302 2494 175 176 486 486 0.032325202637593975 AEQDLIREL 9 Unmodified _AEQDLIREL_ 0 0 0 ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;ENSG00000125124|ENST00000245157|BBS2 ENST00000561853.1_1_16:56536201-56536626:-|nuORF ENST00000561853.1_1_16:56536201-56536626:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 543.79296875 2 543.793121 1085.57169 0.46551 0.00025314 -0.42066 -0.00022875 0.044849 2.4389E-05 543.7928427245455 53.458 0.57999 56.653 56.47 57.05 3.1948 60 34 2 0 0 0 0.12958 4 12076 12028;12076;12116;12123 28.181 5.4063 1 130790 303 2494 175 176 487;488;489;490 488 0.032325202637593975 AEQLIRVY 8 Unmodified _AEQLIRVY_ 0 0 0 ENST00000465985.1_1_20:35526176-35532601:-|nuORF;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 ENST00000465985.1_1_20:35526176-35532601:-|nuORF ENST00000465985.1_1_20:35526176-35532601:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2825012207031 2 496.282192 990.549831 0.24103 0.00011962 0.26782 0.00013291 0.50885 0.00025254 496.28224538795183 52.282 0.56855 52.282 52.039 52.607 0 92 67 2 0 0 0 0.82752 2 11169 11169;11203 57.722 0 1 383370 304 1565 176 177 491;492 491 0.05417760305851971 AEQLTIFFF 9 Unmodified _AEQLTIFFF_ 0 0 0 REV__ENST00000523896.1_1_8:17882818-17885168:+|nuORF REV__ENST00000523896.1_1_8:17882818-17885168:+|nuORF MSMS UPN47_class_I_Rep_2 3 558.29150390625 2 558.292225 1114.5699 NaN NaN NaN NaN NaN NaN NaN 77.389 1 80.721 80.221 81.221 3.3315 0 0 0 0.28335 1 19194 19194 11.64 0.81637 1 + 305 22800 177 178 493 493 0.01719511245778449 AEQLWVIGDQD 11 Unmodified _AEQLWVIGDQD_ 0 0 0 REV__ENST00000430945.5_1_9:94907296-94910408:+|nuORF REV__ENST00000430945.5_1_9:94907296-94910408:+|nuORF MSMS UPN47_class_I_Rep_1 2 637.308837890625 2 637.306592 1272.59863 NaN NaN NaN NaN NaN NaN NaN 61.435 1 64.817 64.317 65.317 3.3815 0 0 0 0.38417 1 14406 14406 2.086 0.24177 1 + 306 21927 178 179 494 494 -0.026764159157210088 AERKAPLEWD 10 Unmodified _AERKAPLEWD_ 0 0 0 REV__nc|ENSG00000100359|Q96HU1-2|SGSM3 REV__nc|ENSG00000100359|Q96HU1-2|SGSM3 MULTI-MSMS UPN47_class_I_Rep_2 3 405.54339599609375 3 405.543655 1213.60914 -1.0018 -0.00040629 0.4948 0.00020066 -0.50703 -0.00020562 405.5437721085397 37.071 0.48913 40.469 40.215 40.704 3.3988 57 38 2 0 0 0 0.53162 1 7024 7024 7.9454 0.90831 1 111240 + 307 18111 179 180 495 495 0.010876115293513067 AERKTRHA 8 Unmodified _AERKTRHA_ 0 0 0 REV__L1MEd_dup16707|chr13:28250804-28251875:-|4.131804389646022|0.0503169500834809|6.36|151.0|4|1|sense REV__L1MEd_dup16707|chr13:28250804-28251875:-|4.131804389646022|0.0503169500834809|6.36|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 484.7735290527344 2 484.772857 967.531161 NaN NaN NaN NaN NaN NaN NaN 69.685 1 73.198 72.698 73.698 3.5128 0 0 0 0.40659 1 16072 16072 1.8442 0 1 + 308 28550 180 181 496 496 0.046096434546598175 AERLQMDEE 9 Unmodified _AERLQMDEE_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MSMS UPN48_class_I_Rep_1 5 560.7505493164062 2 560.750595 1119.48664 NaN NaN NaN NaN NaN NaN NaN 50.996 1 54.521 54.021 55.021 3.5246 0 0 0 0.39598 1 10472 10472 1.6526 0 1 309 2701 181 182 497 497 -0.06832593264357456 AERMHYHQICF 11 Unmodified _AERMHYHQICF_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|129|3|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|129|3|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|129|3|sense MSMS UPN47_class_I_Rep_1 2 478.88287353515625 3 478.88503 1433.63326 NaN NaN NaN NaN NaN NaN NaN 36.946 1 40.615 40.115 41.115 3.6692 0 0 0 0.38417 1 6956 6956 2.4348 0.35082 1 310 13692 182 183 498 498 -0.06621194580247902 AERSLSGLTLC 11 Unmodified _AERSLSGLTLC_ 0 0 0 LTR49-int_dup1738|chr16:31919905-31920917:+|3.7548459241854415|0.1741721939732778|4.43|151.0|29|3|sense LTR49-int_dup1738|chr16:31919905-31920917:+|3.7548459241854415|0.1741721939732778|4.43|151.0|29|3|sense LTR49-int_dup1738|chr16:31919905-31920917:+|3.7548459241854415|0.1741721939732778|4.43|151.0|29|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.8374633789062 2 575.300255 1148.58596 0.5114 0.00029421 0.29643 0.00017054 0.80783 0.00046475 575.3004560157734 65.438 0.66333 68.945 68.693 69.356 3.5077 67 44 2 0 0 0 22.551 1 14713 14713 4.1895 0.90819 1 153560 311 15664 183 184 499 499 0.017608494204068847 AESDFASTF 9 Unmodified _AESDFASTF_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MSMS UPN47_class_I_Rep_1 2 487.7086486816406 2 487.708722 973.402892 NaN NaN NaN NaN NaN NaN NaN 54.787 1 58.289 57.789 58.789 3.5014 0 0 0 0.31276 1 12385 12385 10.074 0.72649 1 312 1980 184 185 500 500 -0.08487381369752711 AESGLWQSF 9 Unmodified _AESGLWQSF_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MSMS UPN47_class_I_Rep_1 2 512.7399291992188 2 512.740357 1023.46616 NaN NaN NaN NaN NaN NaN NaN 69.043 1 72.411 71.911 72.911 3.3678 0 0 0 0.11827 1 16707 16707 21.537 7.6309 1 313 932 185 186 501 501 -0.04463395861853314 AESGLWQSF 9 Unmodified _AESGLWQSF_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MSMS UPN47_class_I_Rep_1 2 512.7410278320312 2 512.740357 1023.46616 NaN NaN NaN NaN NaN NaN NaN 69.185 1 72.553 72.053 73.053 3.3678 0 0 0 0.3377 1 16750 16750 8.7454 2.985 1 314 932 185 186 502 502 -0.04463395861853314 AESIVVHTY 9 Unmodified _AESIVVHTY_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS UPN47_class_I_Rep_1 2 509.76361083984375 2 509.763832 1017.51311 -0.18425 -9.3923E-05 0.041044 2.0923E-05 -0.14321 -7.3001E-05 509.7638210081457 37.869 0.54727 41.534 41.358 41.905 3.6652 76 43 2 0 0 0 0.052902 4 7268 7268;7292;7307;7347 47.749 29.02 1 110090 315 2453 186 187 503;504;505;506 503 0.005054636892737108 AESIVVHTY 9 Unmodified _AESIVVHTY_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS UPN47_class_I_Rep_2 3 509.7631530761719 2 509.763832 1017.51311 -0.25911 -0.00013208 0.072603 3.7011E-05 -0.1865 -9.5072E-05 509.76382319091454 38.241 0.66489 41.629 41.358 42.023 3.3879 93 55 2 0 0 0 0.047711 2 7393 7357;7393 49.933 30.676 1 125680 316 2453 186 187 507;508 508 0.005054636892737108 AESIVVHTY 9 Unmodified _AESIVVHTY_ 0 0 0 nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L nc|ENSG00000124207|P55060-4|CSE1L nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS UPN47_class_I_Rep_3 4 509.7637023925781 2 509.763832 1017.51311 -0.23948 -0.00012208 0.19498 9.9394E-05 -0.044501 -2.2685E-05 509.76377216630453 38.38 0.62952 41.622 41.313 41.943 3.2414 93 47 3 0 0 0 0.066633 1 7469 7469 41.84 31.016 1 119780 317 2453 186 187 509 509 0.005054636892737108 AESLQARREC 10 Unmodified _AESLQARREC_ 0 0 0 L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|75|2|sense L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|75|2|sense L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|75|2|sense MSMS UPN47_class_I_Rep_1 2 581.7858276367188 2 581.785304 1161.55605 NaN NaN NaN NaN NaN NaN NaN 59.826 1 63.224 62.724 63.724 3.3982 0 0 0 0.53105 1 13920 13920 10.8 3.5103 1 318 14539 187 188 510 510 -0.018260895249341047 AESPPRFYF 9 Unmodified _AESPPRFYF_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS UPN47_class_I_Rep_1 2 557.2721557617188 2 557.271824 1112.5291 0.3772 0.0002102 -0.54802 -0.0003054 -0.17082 -9.5193E-05 557.2714065406924 56.369 0.70312 59.826 59.461 60.164 3.4572 88 41 3 0 0 0 0.041849 5 12914 12802;12823;12871;12914;12957 52.268 22.044 1 230240 319 2113 188 189 511;512;513;514;515 514 -0.022668300738359903 AESPPRFYF 9 Unmodified _AESPPRFYF_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS UPN47_class_I_Rep_2 3 557.7733154296875 2 557.271824 1112.5291 0.51863 0.00028902 -0.38086 -0.00021224 0.13777 7.6777E-05 557.2715939848952 56.793 0.61189 60.094 59.68 60.292 3.3009 83 45 2 0 0 0 0.090251 4 12985 12920;12945;12985;13023 36.127 12.979 1 173550 320 2113 188 189 516;517;518;519 518 -0.022668300738359903 AESPPRFYF 9 Unmodified _AESPPRFYF_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS UPN47_class_I_Rep_3 4 557.271728515625 2 557.271824 1112.5291 0.37906 0.00021124 -0.060184 -3.3539E-05 0.31888 0.0001777 557.2717053698562 56.906 0.87178 60.078 59.613 60.485 3.1721 99 69 2 0 0 0 0.090251 6 13051 13002;13008;13051;13093;13172;13182 36.127 12.979 1 211780 321 2113 188 189 520;521;522;523;524;525 522 -0.022668300738359903 AESVGAKHY 9 Unmodified _AESVGAKHY_ 0 0 0 ENSG00000080371|ENST00000261263|RAB21 ENSG00000080371|ENST00000261263|RAB21 ENSG00000080371|ENST00000261263|RAB21 MULTI-SECPEP UPN47_class_I_Rep_3 4 480.813232421875 2 481.240524 960.466495 -0.77059 -0.00037084 0.064561 3.1069E-05 -0.70603 -0.00033977 481.24069428468397 14.27 0.11839 17.64 17.574 17.692 3.3697 17 12 2 0 0 0 0.12477 1 507 507 1.6526 0.85899 1 18959 322 1200 189 190 526 526 -0.015319761420073519 AESVQYNYF 9 Unmodified _AESVQYNYF_ 0 0 0 L1M4c_dup494|chr3:15784798-15785084:+|2.4045883579372496|0.0074405403127597|8.34|151.0|11|3|sense L1M4c_dup494|chr3:15784798-15785084:+|2.4045883579372496|0.0074405403127597|8.34|151.0|11|3|sense L1M4c_dup494|chr3:15784798-15785084:+|2.4045883579372496|0.0074405403127597|8.34|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 561.3076782226562 2 560.750921 1119.48729 0.45716 0.00025635 -0.019203 -1.0768E-05 0.43795 0.00024558 560.7508167469894 50.472 0.83376 53.996 53.668 54.501 3.5246 136 52 3 0 0 0 0.48846 1 10466 10466 1.8442 0.36234 1 302610 323 9069 190 191 527 527 -0.06767430553009035 AESVSKEIF 9 Unmodified _AESVSKEIF_ 0 0 0 REV__ENSG00000271601|ENST00000604000|LIX1L REV__ENSG00000271601|ENST00000604000|LIX1L MULTI-MSMS UPN47_class_I_Rep_2 3 505.2636413574219 2 505.263665 1008.51278 0.13289 6.7142E-05 -0.13898 -7.0219E-05 -0.0060904 -3.0773E-06 505.2635593551473 69.146 0.69541 72.422 72.104 72.799 3.2761 79 55 2 0 0 0 0.32682 1 16788 16788 12.241 2.1667 1 109560 + 324 21419 191 192 528 528 0.008860439694444722 AESVSKEIF 9 Unmodified _AESVSKEIF_ 0 0 0 REV__ENSG00000271601|ENST00000604000|LIX1L REV__ENSG00000271601|ENST00000604000|LIX1L MULTI-MATCH UPN47_class_I_Rep_1 2 2 505.263665 1008.51278 0.17631 8.9082E-05 -0.18844 -9.5211E-05 -0.012131 -6.1293E-06 505.2634747688401 68.883 0.64085 72.251 72.065 72.706 3.3678 -0.084795 5.7906E-05 NaN 12.241 77 48 2 NaN NaN NaN NaN 0 NaN NaN 0 121290 + 325 21419 191 192 0.008860439694444722 AESVSKEIF 9 Unmodified _AESVSKEIF_ 0 0 0 REV__ENSG00000271601|ENST00000604000|LIX1L REV__ENSG00000271601|ENST00000604000|LIX1L MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 505.263665 1008.51278 0.13289 6.7142E-05 -0.13898 -7.0219E-05 -0.0060904 -3.0773E-06 505.2635593551473 69.146 0.69541 72.422 72.104 72.799 3.2761 0.086391 0.00010789 NaN 12.241 79 55 2 NaN NaN NaN NaN 0 NaN NaN 0 109560 + 326 21419 191 192 0.008860439694444722 AESVSKEIF 9 Unmodified _AESVSKEIF_ 0 0 0 REV__ENSG00000271601|ENST00000604000|LIX1L REV__ENSG00000271601|ENST00000604000|LIX1L MULTI-MATCH UPN47_class_I_Rep_3 4 2 505.263665 1008.51278 0.24852 0.00012557 -0.37155 -0.00018773 -0.12303 -6.2163E-05 505.26347393043153 69.129 0.6464 72.334 72.07 72.717 3.2044 -0.0015962 -0.00012713 NaN 12.241 83 51 2 NaN NaN NaN NaN 0 NaN NaN 0 135420 + 327 21419 191 192 0.008860439694444722 AETAPWTSL 9 Unmodified _AETAPWTSL_ 0 0 0 REV__ENST00000388825.8_2_5:150405009-150405039:+|nuORF REV__ENST00000388825.8_2_5:150405009-150405039:+|nuORF MSMS UPN47_class_I_Rep_2 3 488.2431945800781 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 46.963 1 50.314 49.814 50.814 3.3515 0 0 0 0.38639 1 10040 10040 3.9444 0.66309 1 + 328 22073 192 193 529 529 -0.01734511719087095 AETFQTKE 8 Unmodified _AETFQTKE_ 0 0 0 nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9 nc|ENSG00000135773|O14815-2|CAPN9 nc|ENSG00000135773|O14815-2|CAPN9 MULTI-MSMS UPN47_class_I_Rep_3 4 477.2320861816406 2 477.232364 952.450176 -0.61389 -0.00029297 0.11664 5.5663E-05 -0.49725 -0.0002373 477.23228068683835 27.554 0.41092 30.896 30.677 31.088 3.3422 51 34 2 0 0 0 0.82752 1 4151 4151 1.8442 0 1 60964 329 2929 193 194 530 530 -0.027951020987529773 AETHIVLLF 9 Unmodified _AETHIVLLF_ 0 0 0 ENSG00000102158|ENST00000618282|MAGT1 ENSG00000102158|ENST00000618282|MAGT1 ENSG00000102158|ENST00000618282|MAGT1 MULTI-MSMS UPN47_class_I_Rep_1 2 521.800537109375 2 521.800217 1041.58588 0.27078 0.00014129 0.35867 0.00018716 0.62945 0.00032845 521.8005339213097 69.719 0.32342 73.087 72.85 73.173 3.3678 69 29 3 0 0 0 0.066041 1 16913 16913 42.095 3.9434 1 407660 330 1603 194 195 531 531 0.0667521748271156 AETPDIKLF 9 Unmodified _AETPDIKLF_ 0 0 0 ENST00000599909.1_1_19:58899504-58899627:+|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5 ENST00000599909.1_1_19:58899504-58899627:+|nuORF ENST00000599909.1_1_19:58899504-58899627:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 516.791259765625 2 517.281857 1032.54916 0.3004 0.00015539 0.23898 0.00012362 0.53937 0.00027901 517.281935621171 60.543 0.80522 63.924 63.56 64.365 3.3815 186 77 3 0 0 0 0.057133 1 14226 14226 34.402 5.3201 1 777170 331 1247 195 196 532 532 0.034189208661246084 AETPDIKLF 9 Unmodified _AETPDIKLF_ 0 0 0 ENST00000599909.1_1_19:58899504-58899627:+|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5 ENST00000599909.1_1_19:58899504-58899627:+|nuORF ENST00000599909.1_1_19:58899504-58899627:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 516.7914428710938 2 517.281857 1032.54916 0.22604 0.00011692 0.34636 0.00017917 0.5724 0.00029609 517.2820117715189 60.852 1.0299 64.017 63.59 64.62 3.1651 208 90 3 0 0 0 0.095537 1 14410 14410 21.537 3.3906 1 1001400 332 1247 195 196 533 533 0.034189208661246084 AETRLQQIAE 10 Unmodified _AETRLQQIAE_ 0 0 0 REV__ENST00000512780.2_1_4:4459120-4543730:-|nuORF REV__ENST00000512780.2_1_4:4459120-4543730:-|nuORF MSMS UPN48_class_I_Rep_3 7 579.8090209960938 2 579.809302 1157.60405 NaN NaN NaN NaN NaN NaN NaN 42.593 1 46.235 45.735 46.735 3.6415 0 0 0 0.53105 1 7822 7822 3.2813 0 1 + 333 20285 196 197 534 534 0.03155307666770568 AEVAAEKSF 9 Unmodified _AEVAAEKSF_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_1 2 476.2424621582031 2 476.242732 950.470912 -0.33397 -0.00015905 0.20792 9.9022E-05 -0.12604 -6.0026E-05 476.2426360368141 28.674 0.60514 32.44 32.163 32.768 3.7662 103 51 3 0 0 0 0.014369 4 4459 4424;4459;4496;4534 67.081 32.679 1 132920 334 1283 197 198 535;536;537;538 536 -0.006305117191004683 AEVAAEKSF 9 Unmodified _AEVAAEKSF_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_2 3 476.24261474609375 2 476.242732 950.470912 -0.2655 -0.00012644 0.015162 7.2208E-06 -0.25034 -0.00011922 476.2425653074059 28.829 0.75264 32.328 32.01 32.763 3.4986 125 59 3 0 0 0 0.043808 2 4563 4563;4601 51.488 29.951 1 153600 335 1283 197 198 539;540 539 -0.006305117191004683 AEVAAEKSF 9 Unmodified _AEVAAEKSF_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_3 4 476.2425537109375 2 476.242732 950.470912 -0.60117 -0.00028631 0.28568 0.00013605 -0.31549 -0.00015025 476.24265077624904 28.98 0.79145 32.303 32.017 32.809 3.3235 134 65 3 0 0 0 0.043808 4 4616 4578;4616;4651;4688 51.488 23.859 1 172340 336 1283 197 198 541;542;543;544 542 -0.006305117191004683 AEVDYLEQF 9 Unmodified _AEVDYLEQF_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF;ENSG00000013810|ENST00000313288|TACC3 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MSMS UPN47_class_I_Rep_1 2 557.2568969726562 2 557.258579 1112.50261 NaN NaN NaN NaN NaN NaN NaN 69.794 1 73.162 72.662 73.662 3.3678 0 0 0 0.28608 1 16930 16930 11.495 3.3392 1 337 792 198 199 545 545 -0.049145637558240196 AEVDYLEQF 9 Unmodified _AEVDYLEQF_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF;ENSG00000013810|ENST00000313288|TACC3 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MSMS UPN47_class_I_Rep_3 4 557.2591552734375 2 557.258579 1112.50261 NaN NaN NaN NaN NaN NaN NaN 70.008 1 73.213 72.713 73.713 3.2044 0 0 0 0.20399 1 17103 17103 16.149 3.1066 1 338 792 198 199 546 546 -0.049145637558240196 AEVDYLEQF 9 Unmodified _AEVDYLEQF_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF;ENSG00000013810|ENST00000313288|TACC3 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MSMS UPN47_class_I_Rep_3 4 557.2570190429688 2 557.258579 1112.50261 NaN NaN NaN NaN NaN NaN NaN 70.025 1 73.229 72.729 73.729 3.2044 0 0 0 0.25702 1 17108 17108 13.042 3.6593 1 339 792 198 199 547 547 -0.049145637558240196 AEVEWLAPTV 10 Unmodified _AEVEWLAPTV_ 0 0 0 REV__AluSx1_dup25191|chr4:39701746-39702060:-|1.4727019290718657|0.0258554179862211|5.83|151.0|1|1|sense REV__AluSx1_dup25191|chr4:39701746-39702060:-|1.4727019290718657|0.0258554179862211|5.83|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.792724609375 2 557.792589 1113.57063 0.48641 0.00027132 0.24196 0.00013497 0.72837 0.00040628 557.7926133286683 53.303 0.58828 56.498 56.171 56.759 3.1948 46 30 2 0 0 0 0.52562 1 12010 12010 8.7454 1.4562 1 82087 + 340 17170 199 200 548 548 0.018383058948302278 AEVEWSVPVV 10 Unmodified _AEVEWSVPVV_ 0 0 0 REV__AluSc_dup32859|chr19:58247920-58248211:-|2.0391257479456604|0.3207907503651218|2.67|151.0|8|2|sense REV__AluSc_dup32859|chr19:58247920-58248211:-|2.0391257479456604|0.3207907503651218|2.67|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.7940063476562 2 557.792589 1113.57063 0.51647 0.00028808 0.052863 2.9486E-05 0.56933 0.00031757 557.7923580744015 53.017 0.64272 56.344 56.106 56.749 3.3266 47 36 2 0 0 0 0.54822 1 11881 11881 5.7319 0 1 71903 + 341 17084 200 201 549 549 0.01838305894852965 AEVEWSVPVV 10 Unmodified _AEVEWSVPVV_ 0 0 0 REV__AluSc_dup32859|chr19:58247920-58248211:-|2.0391257479456604|0.3207907503651218|2.67|151.0|8|2|sense REV__AluSc_dup32859|chr19:58247920-58248211:-|2.0391257479456604|0.3207907503651218|2.67|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.79345703125 2 557.792589 1113.57063 0.48641 0.00027132 0.24196 0.00013497 0.72837 0.00040628 557.7926133286683 53.303 0.58828 56.498 56.171 56.759 3.1948 46 30 2 0 0 0 0.52083 1 11964 11964 9.3831 0 1 82087 + 342 17084 200 201 550 550 0.01838305894852965 AEVEWTAPIV 10 Unmodified _AEVEWTAPIV_ 0 0 0 REV__AluSp_dup45687|chr19:14740340-14740650:+|1.829469031149604|0.033196692338341|5.78|151.0|13|3|sense REV__AluSp_dup45687|chr19:14740340-14740650:+|1.829469031149604|0.033196692338341|5.78|151.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.2941284179688 2 557.792589 1113.57063 0.31894 0.0001779 -0.065557 -3.6567E-05 0.25338 0.00014133 557.7922475051321 52.704 0.45975 56.263 56.113 56.573 3.5585 38 23 2 0 0 0 0.54822 2 11789 11747;11789 5.7319 0 1 78973 + 343 17114 201 202 551;552 552 0.018383058948302278 AEVFLLVVMA 10 Unmodified _AEVFLLVVMA_ 0 0 0 ENSG00000221840|ENST00000319760|OR4A5;ENSG00000181961|ENST00000314721|OR4A16 ENSG00000221840|ENST00000319760|OR4A5 ENSG00000221840|ENST00000319760|OR4A5 MSMS UPN47_class_I_Rep_1 2 546.2888793945312 2 546.312103 1090.60965 NaN NaN NaN NaN NaN NaN NaN 50.521 1 54.15 53.65 54.65 3.6285 0 0 0 0.53105 1 11085 11085 1.8442 0 1 344 4931 202 203 553 553 0.06797314924870079 AEVQELLEPG 10 Unmodified _AEVQELLEPG_ 0 0 0 AluSz_dup2846|chr1:44556034-44556331:-|1.4931018355854626|0.0006329255067167|11.2|148.0|3|1|sense AluSz_dup2846|chr1:44556034-44556331:-|1.4931018355854626|0.0006329255067167|11.2|148.0|3|1|sense AluSz_dup2846|chr1:44556034-44556331:-|1.4931018355854626|0.0006329255067167|11.2|148.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.7796630859375 2 542.779679 1083.5448 -0.23514 -0.00012763 0.1053 5.7153E-05 -0.12984 -7.0474E-05 542.7796531603194 27.681 0.63971 31.024 30.816 31.455 3.3422 87 52 2 0 0 0 0.56078 1 4319 4319 3.2813 0.28607 1 88453 345 343 203 204 554 554 0.0063741165256487875 AEVSAAFFQL 10 Unmodified _AEVSAAFFQL_ 0 0 0 L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 541.7801513671875 2 541.779482 1081.54441 0.47811 0.00025903 -1.0198 -0.00055251 -0.54169 -0.00029348 541.7790414742578 57.112 0.66468 60.403 60.055 60.72 3.2912 84 59 2 0 0 0 0.34027 2 13140 13140;13182 24.991 0 1 258830 346 14637 204 205 555;556 555 0.0069003672338112665 AEVSAAFFQL 10 Unmodified _AEVSAAFFQL_ 0 0 0 L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 541.7781982421875 2 541.779482 1081.54441 0.35514 0.00019241 -1.0657 -0.0005774 -0.71061 -0.00038499 541.7792079255821 57.138 0.63476 60.306 60.146 60.78 3.1681 97 56 2 0 0 0 0.4561 1 13268 13268 15.248 0 1 201570 347 14637 204 205 557 557 0.0069003672338112665 AEVSAAFFQL 10 Unmodified _AEVSAAFFQL_ 0 0 0 L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|112|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.2810668945312 2 541.779482 1081.54441 0.48787 0.00026432 -0.18184 -9.8515E-05 0.30603 0.0001658 541.779296962247 56.999 0.69087 60.493 60.211 60.902 3.4942 140 58 3 0 0 0 0.53414 1 12432 12432 7.609 0 1 482100 348 14637 204 205 558 558 0.0069003672338112665 AEVSYDHVPAF 11 Unmodified _AEVSYDHVPAF_ 0 0 0 AluJr_dup81204|chr20:31550732-31550982:+|1.224193517418534|0.201247626621627|2.6|151.0|9|3|sense AluJr_dup81204|chr20:31550732-31550982:+|1.224193517418534|0.201247626621627|2.6|151.0|9|3|sense AluJr_dup81204|chr20:31550732-31550982:+|1.224193517418534|0.201247626621627|2.6|151.0|9|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 618.29150390625 2 617.790578 1233.5666 0.5435 0.00033577 -0.75352 -0.00046552 -0.21001 -0.00012974 617.7901781413146 62.23 0.55144 65.704 65.5 66.052 3.4738 54 42 2 0 0 0 0.59712 1 13917 13917 5.2969 0.39987 1 139790 349 184 205 206 559 559 -0.0408378359886683 AEVYYFGPI 9 Unmodified _AEVYYFGPI_ 0 0 0 REV__L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|63|2|anti-sense REV__L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7615356445312 2 529.7633 1057.51205 NaN NaN NaN NaN NaN NaN NaN 69.461 1 72.829 72.329 73.329 3.3678 0 0 0 0.38299 1 16832 16832 4.756 0.42677 1 + 350 25848 206 207 560 560 -0.01440750679626035 AEWPASALVMS 11 Unmodified _AEWPASALVMS_ 0 0 0 REV__MSTB_dup4611|chr9:137778740-137779142:-|1.6054441833298772|0.3827533721675849|2.07|151.0|21|2|anti-sense REV__MSTB_dup4611|chr9:137778740-137779142:-|1.6054441833298772|0.3827533721675849|2.07|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 581.282470703125 2 581.284074 1160.5536 NaN NaN NaN NaN NaN NaN NaN 21.567 1 25.242 24.742 25.742 3.6749 0 0 0 0.38417 1 2359 2359 1.1933 0.50296 1 + 351 31887 207 208 561 561 -0.02025937982580217 AEWTGLVVLT 10 Unmodified _AEWTGLVVLT_ 0 0 0 REV__AluJr_dup7682|chr2:26119525-26119817:-|1.3114883494134248|0.1164885245782019|3.49|151.0|14|3|sense REV__AluJr_dup7682|chr2:26119525-26119817:-|1.3114883494134248|0.1164885245782019|3.49|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 544.80224609375 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 17.763 1 21.327 20.827 21.827 3.5637 0 0 0 0.53105 1 1061 1061 1.4819 0.15237 1 + 352 17059 208 209 562 562 0.05106896274514838 AEYFFFWYVY 10 Unmodified _AEYFFFWYVY_ 0 0 0 REV__HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|40|3|anti-sense REV__HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|40|3|anti-sense MSMS UPN47_class_I_Rep_1 2 478.8829040527344 3 478.885018 1433.63323 NaN NaN NaN NaN NaN NaN NaN 36.815 1 40.484 39.984 40.984 3.6692 0 0 0 0.53105 1 6915 6915 1.9064 0.31409 1 + 353 23489 209 210 563 563 -0.06624548036938904 AEYQDLTFL 9 Unmodified _AEYQDLTFL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN48_class_I_Rep_1 5 550.2681884765625 2 550.268947 1098.52334 0.51076 0.00028105 -0.32882 -0.00018094 0.18193 0.00010011 550.2687033012284 75.919 0.58093 79.419 79.082 79.663 3.4996 108 60 2 0 0 0 0.073198 3 18017 17946;17983;18017 40.239 11.158 1 205910 354 5082 210 211 564;565;566 566 -0.0219797337615546 AEYQDLTFL 9 Unmodified _AEYQDLTFL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN48_class_I_Rep_2 6 550.7703247070312 2 550.268947 1098.52334 0.48428 0.00026648 -0.39754 -0.00021875 0.086742 4.7732E-05 550.2687562344868 75.879 0.24709 79.48 79.402 79.649 3.6011 41 29 2 0 0 0 0.066364 1 17908 17908 41.956 1.507 1 97478 355 5082 210 211 567 567 -0.0219797337615546 AEYQDLTFL 9 Unmodified _AEYQDLTFL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN48_class_I_Rep_3 7 550.2692260742188 2 550.268947 1098.52334 0.45773 0.00025187 -1.814 -0.00099817 -1.3562 -0.0007463 550.2687785139913 75.734 0.58437 79.3 79.024 79.608 3.5659 162 64 4 0 0 0 0.16799 1 17772 17772 23.79 4.3508 1 216010 356 5082 210 211 568 568 -0.0219797337615546 AEYQGFLRQY 10 Unmodified _AEYQGFLRQY_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES;ENST00000494259.1_1_15:91432545-91432674:+|nuORF nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN47_class_I_Rep_1 2 637.811279296875 2 637.811845 1273.60914 NaN NaN NaN NaN NaN NaN NaN 52.533 1 56.091 55.591 56.591 3.5585 0 0 0 0.53105 1 11696 11696 10.8 6.8551 1 357 4957 211 212 569 569 -0.016723884706152603 AEYQGFLRQY 10 Unmodified _AEYQGFLRQY_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES;ENST00000494259.1_1_15:91432545-91432674:+|nuORF nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN47_class_I_Rep_2 3 637.8118286132812 2 637.811845 1273.60914 NaN NaN NaN NaN NaN NaN NaN 52.618 1 55.951 55.451 56.451 3.3332 0 0 0 0.53105 1 11748 11748 17.443 6.6187 1 358 4957 211 212 570 570 -0.016723884706152603 AEYQGFLRQY 10 Unmodified _AEYQGFLRQY_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES;ENST00000494259.1_1_15:91432545-91432674:+|nuORF nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN47_class_I_Rep_2 3 637.8126831054688 2 637.811845 1273.60914 NaN NaN NaN NaN NaN NaN NaN 52.752 1 56.079 55.579 56.579 3.3266 0 0 0 0.53105 1 11789 11789 14.405 9.1747 1 359 4957 211 212 571 571 -0.016723884706152603 AEYQGFLRQY 10 Unmodified _AEYQGFLRQY_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES;ENST00000494259.1_1_15:91432545-91432674:+|nuORF nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN47_class_I_Rep_3 4 637.811767578125 2 637.811845 1273.60914 NaN NaN NaN NaN NaN NaN NaN 52.764 1 55.958 55.458 56.458 3.1948 0 0 0 0.53105 1 11847 11847 19.626 8.802 1 360 4957 211 212 572 572 -0.016723884706152603 AEYQGFLRQY 10 Unmodified _AEYQGFLRQY_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES;ENST00000494259.1_1_15:91432545-91432674:+|nuORF nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN47_class_I_Rep_3 4 637.812744140625 2 637.811845 1273.60914 NaN NaN NaN NaN NaN NaN NaN 52.927 1 56.122 55.622 56.622 3.1948 0 0 0 0.53105 1 11897 11897 17.443 10.719 1 361 4957 211 212 573 573 -0.016723884706152603 AEYSRQCTH 9 Unmodified _AEYSRQCTH_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MSMS UPN46_class_I_Rep_3 1 547.2909545898438 2 547.737822 1093.46109 NaN NaN NaN NaN NaN NaN NaN 19.227 1 19.227 18.727 19.727 0 0 0 0 0.39598 1 1802 1802 1.6526 0.32309 1 362 5633 212 213 574 574 -0.08190022996109292 AEYTVCIYM 9 Unmodified _AEYTVCIYM_ 0 0 0 L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|18|1|anti-sense L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|18|1|anti-sense L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 546.7823486328125 2 546.740654 1091.46675 NaN NaN NaN NaN NaN NaN NaN 34.422 1 38.108 37.608 38.608 3.6859 0 0 0 0.39428 1 6192 6192 2.0598 0.57785 1 363 15350 213 214 575 575 -0.0753206052868336 AEYTVCIYM 9 Unmodified _AEYTVCIYM_ 0 0 0 L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|18|1|anti-sense L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|18|1|anti-sense L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7405395507812 2 546.740654 1091.46675 NaN NaN NaN NaN NaN NaN NaN 34.623 1 38.049 37.549 38.549 3.4253 0 0 0 0.39428 1 6286 6286 2.0598 0.21551 1 364 15350 213 214 576 576 -0.0753206052868336 AFAEPSIALF 10 Unmodified _AFAEPSIALF_ 0 0 0 L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 533.7861328125 2 533.2844 1064.55425 0.35542 0.00018954 0.1383 7.3752E-05 0.49372 0.00026329 533.28449837763 81.26 0.59288 84.823 84.51 85.103 3.5624 131 71 2 0 0 0 0.38932 1 19412 19412 20.454 0.039092 1 526960 365 8616 214 215 577 577 0.024552247287601858 AFAEPSIALF 10 Unmodified _AFAEPSIALF_ 0 0 0 L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 533.2844848632812 2 533.2844 1064.55425 0.43299 0.00023091 0.016658 8.8833E-06 0.44965 0.00023979 533.2844097454624 81.248 0.4286 84.904 84.643 85.072 3.6567 90 54 2 0 0 0 0.38932 2 19268 19231;19268 20.454 2.8047 1 574480 366 8616 214 215 578;579 579 0.024552247287601858 AFAEPSIALF 10 Unmodified _AFAEPSIALF_ 0 0 0 L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|148|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 533.7860717773438 2 533.2844 1064.55425 0.55787 0.0002975 -0.097791 -5.2151E-05 0.46008 0.00024535 533.2843702711779 81.175 0.13611 84.846 84.735 84.872 3.6716 34 18 2 0 0 0 0.30285 1 19199 19199 32.305 5.4218 1 261920 367 8616 214 215 580 580 0.024552247287601858 AFAFFHCF 8 Unmodified _AFAFFHCF_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|229|2|anti-sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|229|2|anti-sense MSMS UPN48_class_I_Rep_2 6 495.22052001953125 2 495.220549 988.426544 NaN NaN NaN NaN NaN NaN NaN 52.917 1 56.527 56.027 57.027 3.6098 0 0 0 0.4032 1 11041 11041 6.3541 3.4649 1 + 368 29082 215 216 581 581 -0.06813194346273121 AFAFGRRR 8 Unmodified _AFAFGRRR_ 0 0 0 REV__ENST00000392329.6_1_2:191208285-191208582:+|nuORF REV__ENST00000392329.6_1_2:191208285-191208582:+|nuORF MSMS UPN47_class_I_Rep_1 2 490.779541015625 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 20.662 1 24.306 23.806 24.806 3.6436 0 0 0 0.40738 1 2115 2115 0.79363 0 1 + 369 22089 216 217 582 582 0.05582555042497006 AFARRVSP 8 Unmodified _AFARRVSP_ 0 0 0 REV__ENSG00000206384|ENST00000358511|COL6A6 REV__ENSG00000206384|ENST00000358511|COL6A6 MSMS UPN47_class_I_Rep_1 2 452.2608947753906 2 452.261594 902.508634 NaN NaN NaN NaN NaN NaN NaN 26.588 1 30.351 29.851 30.851 3.7624 0 0 0 0.40738 1 3825 3825 0.79363 0.10326 1 + 370 21231 217 218 583 583 0.05348044057041079 AFASYNKF 8 Unmodified _AFASYNKF_ 0 0 0 ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4;nc|ENSG00000103546|P23975-3|SLC6A2;ENSG00000103546|ENST00000568943|SLC6A2;nc|ENSG00000103546|P23975-2|SLC6A2 ENSG00000108576|ENST00000650711|SLC6A4 ENSG00000108576|ENST00000650711|SLC6A4 MSMS UPN46_class_I_Rep_3 1 474.2330017089844 2 474.23471 946.454868 NaN NaN NaN NaN NaN NaN NaN 43.314 1 43.314 42.814 43.814 0 0 0 0 0.39996 1 8639 8639 7.9102 0 1 371 1869 218 219 584 584 -0.020501731653439492 AFATLKSLF 9 Unmodified _AFATLKSLF_ 0 0 0 REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|28|1|sense REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.29010009765625 2 499.289485 996.564418 0.30173 0.00015065 0.91541 0.00045706 1.2171 0.00060771 499.2896589851807 64.442 0.10098 67.897 67.835 67.936 3.4541 9 6 2 0 0 0 0.43153 1 14597 14597 6.2058 1.4498 1 69206 + 372 24482 219 220 585 585 0.06599832453980525 AFATPIKIS 9 Unmodified _AFATPIKIS_ 0 0 0 REV__L1MB7_dup17104|chr13:112534766-112536785:-|7.262479139614096|0.2406706949227142|4.92|151.0|34|2|sense REV__L1MB7_dup17104|chr13:112534766-112536785:-|7.262479139614096|0.2406706949227142|4.92|151.0|34|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2818603515625 2 474.28166 946.548768 0.061653 2.9241E-05 1.1382 0.00053983 1.1999 0.00056908 474.2819891877928 33.262 0.15963 33.262 33.159 33.319 0 17 13 2 0 0 0 0.40174 1 5800 5800 7.9102 2.1497 1 299480 + 373 26163 220 221 586 586 0.07335545936939525 AFCCCCCCQYC 11 Unmodified _AFCCCCCCQYC_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense MSMS UPN46_class_I_Rep_3 1 417.1083068847656 3 417.10804 1248.30229 NaN NaN NaN NaN NaN NaN NaN 95.775 1 95.775 95.275 96.275 0 0 0 0 0.38417 1 23268 23268 0 0 1 374 13613 221 222 587 587 -0.311929268700851 AFCCCCCCQYC 11 Unmodified _AFCCCCCCQYC_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense MSMS UPN48_class_I_Rep_1 5 417.1086730957031 3 417.10804 1248.30229 NaN NaN NaN NaN NaN NaN NaN 92.076 1 95.702 95.202 96.202 3.626 0 0 0 0.38417 1 22133 22133 0 0 1 375 13613 221 222 588 588 -0.311929268700851 AFCCCCCCQYC 11 Unmodified _AFCCCCCCQYC_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|329|3|anti-sense MSMS UPN48_class_I_Rep_1 5 417.1085205078125 3 417.10804 1248.30229 NaN NaN NaN NaN NaN NaN NaN 92.334 1 95.96 95.46 96.46 3.626 0 0 0 0.38417 1 22188 22188 0 0 1 376 13613 221 222 589 589 -0.311929268700851 AFCEYSCCEYC 11 Unmodified _AFCEYSCCEYC_ 0 0 0 L1MB5_dup6720|chr13:36336398-36337086:+|1.6893922248788784|0.3130922815204046|2.43|151.0|47|3|anti-sense L1MB5_dup6720|chr13:36336398-36337086:+|1.6893922248788784|0.3130922815204046|2.43|151.0|47|3|anti-sense L1MB5_dup6720|chr13:36336398-36337086:+|1.6893922248788784|0.3130922815204046|2.43|151.0|47|3|anti-sense MSMS UPN46_class_I_Rep_3 1 440.7996520996094 3 440.806177 1319.3967 NaN NaN NaN NaN NaN NaN NaN 119.17 1 119.17 118.67 119.67 0 0 0 0 0.38417 1 29608 29608 0.094841 0.094841 1 377 10637 222 223 590 590 -0.2502205025107287 AFEFVGEFF 9 Unmodified _AFEFVGEFF_ 0 0 0 nc|ENSG00000147257|P51654-2|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-3|GPC3 nc|ENSG00000147257|P51654-2|GPC3 nc|ENSG00000147257|P51654-2|GPC3 MSMS UPN47_class_I_Rep_1 2 546.80810546875 2 546.755475 1091.4964 NaN NaN NaN NaN NaN NaN NaN 53.03 1 56.589 56.089 57.089 3.5585 0 0 0 0.381 1 11847 11847 5.2307 0 1 378 3470 223 224 591 591 -0.04569037196665704 AFEIHYVI 8 Unmodified _AFEIHYVI_ 0 0 0 L1ME1_dup3428|chr2:68225685-68226347:+|1.6821492971544498|0.007876957314776|7.74|151.0|44|3|anti-sense L1ME1_dup3428|chr2:68225685-68226347:+|1.6821492971544498|0.007876957314776|7.74|151.0|44|3|anti-sense L1ME1_dup3428|chr2:68225685-68226347:+|1.6821492971544498|0.007876957314776|7.74|151.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2732238769531 2 496.26601 990.517468 NaN NaN NaN NaN NaN NaN NaN 41.375 1 41.375 40.875 41.875 0 0 0 0 0.39624 1 8105 8105 9.3474 1.4373 1 379 12397 224 225 592 592 0.021829729028581824 AFEKIQVLF 9 Unmodified _AFEKIQVLF_ 0 0 0 REV__ENSG00000082898|ENST00000401558|XPO1 REV__ENSG00000082898|ENST00000401558|XPO1 MSMS UPN48_class_I_Rep_1 5 547.81640625 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 23.27 1 26.83 26.33 27.33 3.5605 0 0 0 0.39428 1 2402 2402 2.0598 0 1 + 380 17926 225 226 593 593 0.07411790516789551 AFELTPPLY 9 Unmodified _AFELTPPLY_ 0 0 0 REV__nc|ENSG00000204662|Q5W188|CST9LP1 REV__nc|ENSG00000204662|Q5W188|CST9LP1 MSMS UPN47_class_I_Rep_1 2 525.7774658203125 2 525.778951 1049.54335 NaN NaN NaN NaN NaN NaN NaN 80.218 1 83.683 83.183 84.183 3.465 0 0 0 0.3264 1 19987 19987 9.3474 1.4373 1 + 381 32097 226 227 594 594 0.02055822354486736 AFFALICFYI 10 Unmodified _AFFALICFYI_ 0 0 0 REV__L1ME2_dup8742|chr11:86003864-86004511:+|2.2810769106662563|0.2120918214192629|3.43|151.0|42|3|anti-sense REV__L1ME2_dup8742|chr11:86003864-86004511:+|2.2810769106662563|0.2120918214192629|3.43|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_1 2 604.2599487304688 2 604.314646 1206.61474 NaN NaN NaN NaN NaN NaN NaN 51.369 1 54.963 54.463 55.463 3.5932 0 0 0 0.53105 1 11345 11345 1.8442 0 1 + 382 27894 227 228 595 595 0.019696187874842508 AFFFTSAARN 10 Unmodified _AFFFTSAARN_ 0 0 0 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 MSMS UPN47_class_I_Rep_2 3 566.2802734375 2 566.282723 1130.55089 NaN NaN NaN NaN NaN NaN NaN 17.144 1 20.531 20.031 21.031 3.387 0 0 0 0.53105 1 1225 1225 1.4819 0.79152 1 + 383 19219 228 229 596 596 -0.009160253252503026 AFFGALIM 8 Unmodified _AFFGALIM_ 0 0 0 REV__L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|293|2|anti-sense REV__L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|293|2|anti-sense MSMS UPN46_class_I_Rep_3 1 435.23321533203125 2 435.233125 868.451696 NaN NaN NaN NaN NaN NaN NaN 32.787 1 32.787 32.287 33.287 0 0 0 0 0.40738 1 5654 5654 0.79363 0 1 + 384 30215 229 230 597 597 0.012208604563170411 AFFGALIM 8 Unmodified _AFFGALIM_ 0 0 0 REV__L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|293|2|anti-sense REV__L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|293|2|anti-sense MSMS UPN46_class_I_Rep_3 1 435.2341003417969 2 435.233125 868.451696 NaN NaN NaN NaN NaN NaN NaN 33.028 1 33.028 32.528 33.528 0 0 0 0 0.40738 1 5727 5727 0.79363 0 1 + 385 30215 229 230 598 598 0.012208604563170411 AFFGLIGEER 10 Unmodified _AFFGLIGEER_ 0 0 0 REV__ENSG00000109919|ENST00000302503|MTCH2 REV__ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS UPN48_class_I_Rep_1 5 569.79736328125 2 569.798206 1137.58186 0.4617 0.00026307 -0.96463 -0.00054965 -0.50294 -0.00028657 569.7986056741552 55.486 0.58125 58.994 58.706 59.287 3.5082 57 37 2 0 0 0 0.44401 2 11852 11837;11852 16.149 2.5342 1 71963 + 386 18417 230 231 599;600 600 0.018571279890011283 AFFGLIGEER 10 Unmodified _AFFGLIGEER_ 0 0 0 REV__ENSG00000109919|ENST00000302503|MTCH2 REV__ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS UPN48_class_I_Rep_2 6 569.7977905273438 2 569.798206 1137.58186 0.60959 0.00034734 -1.71 -0.00097438 -1.1005 -0.00062704 569.7985063976905 55.541 0.56422 59.097 58.76 59.324 3.5559 52 32 2 0 0 0 0.43106 5 11815 11787;11807;11815;11826;11877 17.113 3.9744 1 119060 + 387 18417 230 231 601;602;603;604;605 603 0.018571279890011283 AFFGLIGEER 10 Unmodified _AFFGLIGEER_ 0 0 0 REV__ENSG00000109919|ENST00000302503|MTCH2 REV__ENSG00000109919|ENST00000302503|MTCH2 MULTI-SECPEP UPN48_class_I_Rep_2 6 569.8358154296875 2 569.798206 1137.58186 0.60959 0.00034734 -1.71 -0.00097438 -1.1005 -0.00062704 569.7985063976905 55.541 0.56422 59.097 58.76 59.324 3.5559 52 32 2 0 0 0 0.84575 1 11765 11765 12.241 4.0851 1 119060 + 388 18417 230 231 606 606 0.018571279890011283 AFFGLIGEER 10 Unmodified _AFFGLIGEER_ 0 0 0 REV__ENSG00000109919|ENST00000302503|MTCH2 REV__ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS UPN48_class_I_Rep_3 7 570.2979125976562 2 569.798206 1137.58186 0.34086 0.00019422 -2.0929 -0.0011925 -1.7521 -0.00099832 569.7979777713573 55.345 0.45077 58.9 58.782 59.233 3.5554 39 25 2 0 0 0 0.52083 1 11773 11773 9.3831 1.2276 1 145820 + 389 18417 230 231 607 607 0.018571279890011283 AFFKFLCKK 9 Unmodified _AFFKFLCKK_ 0 0 0 REV__L1MB3_dup7242|chr8:6631301-6632353:+|1.5878632855078605|0.139166911224376|3.51|151.0|47|1|anti-sense REV__L1MB3_dup7242|chr8:6631301-6632353:+|1.5878632855078605|0.139166911224376|3.51|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_2 6 566.3220825195312 2 566.322805 1130.63106 NaN NaN NaN NaN NaN NaN NaN 37.193 1 40.895 40.395 41.395 3.7021 0 0 0 0.40038 1 6338 6338 0.6015 0 1 + 390 25912 231 232 608 608 0.07096744744239913 AFFQTNRV 8 Unmodified _AFFQTNRV_ 0 0 0 L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|85|1|anti-sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|85|1|anti-sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|85|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 491.7962951660156 2 491.758884 981.503215 0.15258 7.5035E-05 0.31245 0.00015365 0.46504 0.00022869 491.75891810218013 47.229 0.4836 50.751 50.484 50.968 3.5219 50 30 2 0 0 0 0.72333 1 9276 9276 16.942 3.4344 1 145740 391 8584 232 233 609 609 0.011723204745635485 AFFQTNRV 8 Unmodified _AFFQTNRV_ 0 0 0 L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|85|1|anti-sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|85|1|anti-sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|85|1|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7590026855469 2 491.758884 981.503215 NaN NaN NaN NaN NaN NaN NaN 46.89 1 50.639 50.139 51.139 3.7494 0 0 0 0.33946 1 9215 9215 24.674 0 1 392 8584 232 233 610 610 0.011723204745635485 AFFRFLCRA 9 Unmodified _AFFRFLCRA_ 0 0 0 REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|99|3|anti-sense REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|99|3|anti-sense MSMS UPN47_class_I_Rep_1 2 565.8008422851562 2 565.800029 1129.5855 NaN NaN NaN NaN NaN NaN NaN 16.876 1 20.398 19.898 20.898 3.5224 0 0 0 0.40038 1 1163 1163 0.6015 0 1 + 393 26698 233 234 611 611 0.025895192818779833 AFFRFLCRA 9 Unmodified _AFFRFLCRA_ 0 0 0 REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|99|3|anti-sense REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|99|3|anti-sense MSMS UPN47_class_I_Rep_1 2 566.2802734375 2 565.800029 1129.5855 NaN NaN NaN NaN NaN NaN NaN 17.159 1 20.681 20.181 21.181 3.5224 0 0 0 0.40038 1 1234 1234 0.6015 0 1 + 394 26698 233 234 612 612 0.025895192818779833 AFFRFLCRA 9 Unmodified _AFFRFLCRA_ 0 0 0 REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|99|3|anti-sense REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|99|3|anti-sense MSMS UPN47_class_I_Rep_3 4 565.7996826171875 2 565.800029 1129.5855 NaN NaN NaN NaN NaN NaN NaN 16.882 1 20.244 19.744 20.744 3.3619 0 0 0 0.40038 1 1133 1133 0.6015 0 1 + 395 26698 233 234 613 613 0.025895192818779833 AFFSNKVFLM 10 Unmodified _AFFSNKVFLM_ 0 0 0 Tigger1_dup7710|chrX:134402647-134405032:+|1.0198346954577744|0.1392758092483212|2.87|151.0|42|2|sense Tigger1_dup7710|chrX:134402647-134405032:+|1.0198346954577744|0.1392758092483212|2.87|151.0|42|2|sense Tigger1_dup7710|chrX:134402647-134405032:+|1.0198346954577744|0.1392758092483212|2.87|151.0|42|2|sense MSMS UPN47_class_I_Rep_1 2 401.87786865234375 3 401.87921 1202.6158 NaN NaN NaN NaN NaN NaN NaN 17.163 1 20.686 20.186 21.186 3.5224 0 0 0 0.53105 1 1235 1235 0.77653 0 1 396 33179 234 235 614 614 0.022598331564040564 AFFTLFHSY 9 Unmodified _AFFTLFHSY_ 0 0 0 L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|62|1|anti-sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|62|1|anti-sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_2 6 566.7764892578125 2 566.776742 1131.53893 NaN NaN NaN NaN NaN NaN NaN 44.827 1 48.589 48.089 49.089 3.7617 0 0 0 0.38478 1 8588 8588 4.3292 0.73274 1 397 9892 235 236 615 615 -0.021576420684368713 AFFTLFHSY 9 Unmodified _AFFTLFHSY_ 0 0 0 L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|62|1|anti-sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|62|1|anti-sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|62|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 566.7764892578125 2 566.776742 1131.53893 0.36575 0.0002073 0.31581 0.00017899 0.68156 0.00038629 566.7768226817209 44.951 0.20416 48.588 48.53 48.734 3.6372 11 10 2 0 0 0 0.46434 1 8580 8580 4.3292 0.38484 1 61825 398 9892 235 236 616 616 -0.021576420684368713 AFFYTKKK 8 Unmodified _AFFYTKKK_ 0 0 0 REV__ENSG00000166670|ENST00000279441|MMP10 REV__ENSG00000166670|ENST00000279441|MMP10 MSMS UPN47_class_I_Rep_1 2 516.814208984375 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 28.903 1 32.661 32.161 33.161 3.7578 0 0 0 0.40738 1 4516 4516 0.79363 0.10326 1 + 399 20184 236 237 617 617 0.06587538690882866 AFFYTKKK 8 Unmodified _AFFYTKKK_ 0 0 0 REV__ENSG00000166670|ENST00000279441|MMP10 REV__ENSG00000166670|ENST00000279441|MMP10 MSMS UPN47_class_I_Rep_2 3 516.7971801757812 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 31.254 1 34.723 34.223 35.223 3.4691 0 0 0 0.40738 1 5268 5268 0.79363 0 1 + 400 20184 236 237 618 618 0.06587538690882866 AFFYTKKK 8 Unmodified _AFFYTKKK_ 0 0 0 REV__ENSG00000166670|ENST00000279441|MMP10 REV__ENSG00000166670|ENST00000279441|MMP10 MSMS UPN47_class_I_Rep_3 4 516.815673828125 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 29.241 1 32.564 32.064 33.064 3.3235 0 0 0 0.40738 1 4699 4699 0.79363 0 1 + 401 20184 236 237 619 619 0.06587538690882866 AFGARSSD 8 Unmodified _AFGARSSD_ 0 0 0 ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.6905822753906 2 405.690667 809.366781 NaN NaN NaN NaN NaN NaN NaN 22.558 1 25.908 25.408 26.408 3.3503 0 0 0 0.40738 1 2720 2720 0.79363 0 1 402 5973 237 238 620 620 -0.04552793755954099 AFGMRQWGF 9 Unmodified _AFGMRQWGF_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|340|3|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|340|3|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|340|3|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2747802734375 2 550.260736 1098.50692 NaN NaN NaN NaN NaN NaN NaN 62.686 1 66.16 65.66 66.66 3.4738 0 0 0 0.38478 1 14031 14031 4.3292 0.38484 1 403 13647 238 239 621 621 -0.03839333023211111 AFGYLCFACK 10 Unmodified _AFGYLCFACK_ 0 0 0 REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF MSMS UPN47_class_I_Rep_1 2 561.8041381835938 2 561.759181 1121.50381 NaN NaN NaN NaN NaN NaN NaN 57.647 1 61.084 60.584 61.584 3.437 0 0 0 0.53105 1 13251 13251 1.6526 0 1 + 404 22511 239 240 622 622 -0.05208344192283221 AFHKLITSL 9 Unmodified _AFHKLITSL_ 0 0 0 REV__Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|165|3|anti-sense REV__Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|165|3|anti-sense MSMS UPN47_class_I_Rep_3 4 515.3060913085938 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 62.829 1 65.998 65.498 66.498 3.1698 0 0 0 0.38784 1 14923 14923 3.5965 0.31518 1 + 405 17401 240 241 623 623 0.08870923719609891 AFHLLGVF 8 Unmodified _AFHLLGVF_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|355|3|anti-sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|355|3|anti-sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|355|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.2577819824219 2 452.257988 902.501424 0.014365 6.4967E-06 -0.25472 -0.0001152 -0.24036 -0.0001087 452.2577691009194 49.949 0.80235 53.474 53.088 53.891 3.5246 76 49 2 0 0 0 0.82752 1 10120 10120 11.114 11.114 1 164530 406 14972 241 242 624 624 0.0462731145661337 AFHRLALTKLD 11 Unmodified _AFHRLALTKLD_ 0 0 0 ENST00000557271.5_1_14:105211116-105211251:+|nuORF ENST00000557271.5_1_14:105211116-105211251:+|nuORF ENST00000557271.5_1_14:105211116-105211251:+|nuORF MSMS UPN46_class_I_Rep_3 1 642.8726196289062 2 642.874779 1283.73501 NaN NaN NaN NaN NaN NaN NaN 52.974 1 52.974 52.474 53.474 0 0 0 0 0.38417 1 11362 11362 2.7352 0 1 407 7438 242 243 625 625 0.10448743105439462 AFILEHLQ 8 Unmodified _AFILEHLQ_ 0 0 0 ENST00000453426.1_1_6:32813264-32813414:+|nuORF ENST00000453426.1_1_6:32813264-32813414:+|nuORF ENST00000453426.1_1_6:32813264-32813414:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.731689453125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 28.66 1 32.159 31.659 32.659 3.4986 0 0 0 0.40738 1 4478 4478 0.79363 0 1 408 6824 243 244 626 626 0.042383752771456784 AFILMRYP 8 Unmodified _AFILMRYP_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS UPN46_class_I_Rep_3 1 505.6895446777344 2 505.778231 1009.54191 0.25392 0.00012843 -1.9179 -0.00097006 -1.664 -0.00084163 505.7773542893924 65.393 0.069214 65.393 65.35 65.419 0 9 6 2 0 0 0 0.82752 1 14770 14770 6.3541 0 1 63256 409 4299 244 245 627 627 0.03751909784716645 AFILPFFP 8 Unmodified _AFILPFFP_ 0 0 0 L1MDa_dup3570|chr9:92236834-92237916:-|1.5602668039810943|0.0888796395178819|4.13|151.0|71|3|anti-sense L1MDa_dup3570|chr9:92236834-92237916:-|1.5602668039810943|0.0888796395178819|4.13|151.0|71|3|anti-sense L1MDa_dup3570|chr9:92236834-92237916:-|1.5602668039810943|0.0888796395178819|4.13|151.0|71|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.32659912109375 2 476.270564 950.526576 NaN NaN NaN NaN NaN NaN NaN 35.546 1 35.546 35.046 36.046 0 0 0 0 0.4032 1 6484 6484 6.3541 0 1 410 12119 245 246 628 628 0.04933366259183458 AFKLEKRRQEK 11 Unmodified _AFKLEKRRQEK_ 0 0 0 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 MULTI-MSMS UPN47_class_I_Rep_3 4 478.61822509765625 3 478.284287 1431.83103 -0.81378 -0.00038922 -0.041175 -1.9694E-05 -0.85496 -0.00040891 478.2844999682719 13.557 0.2735 16.931 16.847 17.121 3.3734 41 31 2 0 0 0 0.68478 1 335 335 0.094841 0 1 44574 411 2916 246 247 629 629 0.1323889094551305 AFKNVYKVGVF 11 Unmodified _AFKNVYKVGVF_ 0 0 0 REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4 REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4 MULTI-MSMS UPN47_class_I_Rep_2 3 636.858642578125 2 636.360973 1270.70739 0.37142 0.00023635 -3.4659 -0.0022056 -3.0945 -0.0019692 636.8601506215058 66.194 0.28303 69.453 69.277 69.56 3.2588 18 15 2 0 0 0 0.65271 1 15914 15914 2.9952 0.26005 1 62567 + 412 18792 247 248 630 630 0.08286839845209215 AFKRQIHKYRL 11 Unmodified _AFKRQIHKYRL_ 0 0 0 REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MSMS UPN48_class_I_Rep_3 7 487.2940979003906 3 487.293005 1458.85719 0.23666 0.00011532 1.7998 0.00087705 2.0365 0.00099237 487.29365847115116 94.99 0.070465 98.892 98.86 98.931 3.9016 12 9 2 0 0 0 0.68081 1 22518 22518 0.45452 0 1 78837 + 413 32159 248 249 631 631 0.14611204907669162 AFKRQIHKYRL 11 Unmodified _AFKRQIHKYRL_ 0 0 0 REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MATCH UPN47_class_I_Rep_3 4 3 487.293005 1458.85719 0.22305 0.00010869 0.90213 0.0004396 1.1252 0.00054829 487.29380154212964 95.337 0.031517 98.747 98.726 98.758 3.4095 -0.027813 -0.00022373 NaN 0.45452 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 19236 + 414 32159 248 249 0.14611204907669162 AFKRQIHKYRL 11 Unmodified _AFKRQIHKYRL_ 0 0 0 REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MATCH UPN48_class_I_Rep_2 6 3 487.293005 1458.85719 0.25434 0.00012394 0.59711 0.00029097 0.85145 0.00041491 487.29325838394493 94.939 0.042542 98.72 98.7 98.742 3.7804 -0.055076 -0.00066962 NaN 0.45452 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 76812 + 415 32159 248 249 0.14611204907669162 AFKRQIHKYRL 11 Unmodified _AFKRQIHKYRL_ 0 0 0 REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant REV__PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 487.293005 1458.85719 0.23666 0.00011532 1.7998 0.00087705 2.0365 0.00099237 487.29365847115116 94.99 0.070465 98.892 98.86 98.931 3.9016 0.11742 0.0010886 NaN 0.45452 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 78837 + 416 32159 248 249 0.14611204907669162 AFLHLKRYW 9 Unmodified _AFLHLKRYW_ 0 0 0 L1MC1_dup392|chr1:97401614-97403138:-|1.619297388567624|0.0119285221604487|7.08|151.0|71|1|anti-sense L1MC1_dup392|chr1:97401614-97403138:-|1.619297388567624|0.0119285221604487|7.08|151.0|71|1|anti-sense L1MC1_dup392|chr1:97401614-97403138:-|1.619297388567624|0.0119285221604487|7.08|151.0|71|1|anti-sense MSMS UPN46_class_I_Rep_3 1 617.3473510742188 2 617.3482 1232.68185 NaN NaN NaN NaN NaN NaN NaN 79.497 1 79.497 78.997 79.997 0 0 0 0 0.40038 1 18678 18678 0.6015 0 1 417 11142 249 250 632 632 0.0748141011347343 AFLHWWLGSGE 11 Unmodified _AFLHWWLGSGE_ 0 0 0 L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|208|3|anti-sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|208|3|anti-sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|208|3|anti-sense MSMS UPN48_class_I_Rep_2 6 434.9482421875 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 98.223 1 101.99 101.49 102.49 3.7707 0 0 0 0.38417 1 23335 23335 1.3296 0.11481 1 418 15193 250 251 633 633 -0.019437807453869027 AFLIVKPTK 9 Unmodified _AFLIVKPTK_ 0 0 0 REV__ENST00000513912.1_1_5:140073076-140073352:+|nuORF REV__ENST00000513912.1_1_5:140073076-140073352:+|nuORF MSMS UPN47_class_I_Rep_1 2 508.8275146484375 2 508.828778 1015.643 NaN NaN NaN NaN NaN NaN NaN 74.123 1 77.51 77.01 78.01 3.3867 0 0 0 0.39598 1 18231 18231 1.6526 0 1 + 419 22754 251 252 634 634 0.13580684759074302 AFLKVSSVF 9 Unmodified _AFLKVSSVF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 499.2892761230469 2 499.289485 996.564418 0.29703 0.0001483 -0.91251 -0.00045561 -0.61548 -0.0003073 499.28897640565054 64.704 0.12532 68.158 68.12 68.245 3.4541 12 7 2 0 0 0 0.13244 1 14670 14670 27.629 12.791 1 94579 420 1503 252 253 635 635 0.06599832454003263 AFLKVSSVF 9 Unmodified _AFLKVSSVF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MSMS UPN48_class_I_Rep_1 5 499.28857421875 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 64.544 1 67.998 67.498 68.498 3.4541 0 0 0 0.27207 1 14620 14620 12.241 2.1667 1 421 1503 252 253 636 636 0.06599832454003263 AFLKVSSVF 9 Unmodified _AFLKVSSVF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MSMS UPN48_class_I_Rep_2 6 499.2901306152344 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 64.455 1 67.93 67.43 68.43 3.4743 0 0 0 0.32573 1 14573 14573 9.3831 2.66 1 422 1503 252 253 637 637 0.06599832454003263 AFLKVSSVF 9 Unmodified _AFLKVSSVF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MSMS UPN48_class_I_Rep_3 7 499.2895812988281 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 64.326 1 67.835 67.335 68.335 3.5083 0 0 0 0.20399 1 14453 14453 16.149 8.239 1 423 1503 252 253 638 638 0.06599832454003263 AFLLVNLFKF 10 Unmodified _AFLLVNLFKF_ 0 0 0 L1PA13_dup5152|chrX:65977038-65978836:-|1.3382183763468345|0.0126415698992373|6.73|149.0|70|1|anti-sense L1PA13_dup5152|chrX:65977038-65978836:-|1.3382183763468345|0.0126415698992373|6.73|149.0|70|1|anti-sense L1PA13_dup5152|chrX:65977038-65978836:-|1.3382183763468345|0.0126415698992373|6.73|149.0|70|1|anti-sense MSMS UPN46_class_I_Rep_3 1 606.36083984375 2 606.362985 1210.71142 NaN NaN NaN NaN NaN NaN NaN 30.733 1 30.733 30.233 31.233 0 0 0 0 0.53105 1 5046 5046 1.4819 0.15237 1 424 13767 253 254 639 639 0.11448929338939706 AFLYIFFHKI 10 Unmodified _AFLYIFFHKI_ 0 0 0 REV__L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|72|2|anti-sense REV__L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|72|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 432.8850402832031 3 433.581382 1297.72232 -1.1479 -0.0004977 -1.4294 -0.00061976 -2.5773 -0.0011175 433.58078857715526 23.923 0.30026 27.273 27.173 27.473 3.3509 40 23 2 0 0 0 0.84575 1 3131 3131 1.9064 0.31409 1 43452 + 425 25358 254 255 640 640 0.08536331713230538 AFMKGVFTF 9 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ AFM(1)KGVFTF AFM(56)KGVFTF 0 0 1 ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENST00000489739.1_1_9:139685858-139686514:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 532.267578125 2 532.267696 1062.52084 0.47258 0.00025154 0.046887 2.4956E-05 0.51947 0.0002765 532.2677521440983 59.399 0.71332 62.879 62.563 63.276 3.4801 80 47 2 0 0 0 0.0364 1 13036 13036 56.177 23.872 1 236290 426 5726 255 256 641 641 172 -0.007921003148112504 AFMKGVFTF 9 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ AFM(1)KGVFTF AFM(72)KGVFTF 0 0 1 ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENST00000489739.1_1_9:139685858-139686514:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 532.2680053710938 2 532.267696 1062.52084 0.51237 0.00027272 0.078672 4.1875E-05 0.59104 0.00031459 532.2677507856268 59.379 0.65299 62.866 62.554 63.207 3.4868 72 43 2 0 0 0 0.0070866 1 13034 13034 71.922 46.523 1 224200 427 5726 255 256 642 642 172 -0.007921003148112504 AFMKGVFTF 9 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ AFM(1)KGVFTF AFM(65)KGVFTF 0 0 1 ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENST00000489739.1_1_9:139685858-139686514:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 532.2679443359375 2 532.267696 1062.52084 0.47913 0.00025502 0.019062 1.0146E-05 0.49819 0.00026517 532.267654289805 59.276 0.80451 62.799 62.412 63.217 3.5231 86 55 2 0 0 0 0.01718 1 12898 12898 65.235 32.93 1 207410 428 5726 255 256 643 643 172 -0.007921003148112504 AFMRCVALCN 10 Unmodified _AFMRCVALCN_ 0 0 0 ENST00000391705.7_1_19:57869399-57869579:+|nuORF ENST00000391705.7_1_19:57869399-57869579:+|nuORF ENST00000391705.7_1_19:57869399-57869579:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 564.2762451171875 2 564.261565 1126.50858 0.41455 0.00023392 4.3708 0.0024663 4.7853 0.0027002 564.7662834420423 48.737 0.13037 51.972 51.88 52.011 3.2345 6 5 2 0 0 0 0.56333 1 10603 10603 1.4819 0.79152 1 67581 429 6516 256 257 644 644 -0.04961783321141411 AFNISIILT 9 Unmodified _AFNISIILT_ 0 0 0 L1PA14_dup2370|chr11:74867081-74867917:+|1.2361558766242269|0.0669255841966602|4.21|151.0|42|3|anti-sense L1PA14_dup2370|chr11:74867081-74867917:+|1.2361558766242269|0.0669255841966602|4.21|151.0|42|3|anti-sense L1PA14_dup2370|chr11:74867081-74867917:+|1.2361558766242269|0.0669255841966602|4.21|151.0|42|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29571533203125 2 496.294768 990.574983 0.25829 0.00012819 1.4876 0.00073831 1.7459 0.0008665 496.29546842963975 39.595 0.087677 39.595 39.562 39.65 0 8 6 2 0 0 0 0.48643 1 7632 7632 2.0598 0.40713 1 680020 430 13833 257 258 645 645 0.07931815108440787 AFPHFPGNLY 10 Unmodified _AFPHFPGNLY_ 0 0 0 L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|67|3|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|67|3|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|67|3|sense MSMS UPN47_class_I_Rep_2 3 581.7866821289062 2 581.787641 1161.56073 NaN NaN NaN NaN NaN NaN NaN 31.981 1 35.45 34.95 35.95 3.4691 0 0 0 0.53105 1 5484 5484 1.6526 0 1 431 15388 258 259 646 646 -0.01358837319844497 AFPLGLDASL 10 Unmodified _AFPLGLDASL_ 0 0 0 ENSG00000283528|ENST00000636941|TCAF2C;nc|ENSG00000170379|A6NFQ2-3|TCAF2;nc|ENSG00000170379|A6NFQ2-2|TCAF2;ENSG00000170379|ENST00000684770|TCAF2 ENSG00000283528|ENST00000636941|TCAF2C ENSG00000283528|ENST00000636941|TCAF2C MULTI-SECPEP UPN46_class_I_Rep_3 1 501.7481689453125 2 502.276575 1002.5386 0.27713 0.0001392 -1.9506 -0.00097975 -1.6735 -0.00084056 503.2794417358483 46.283 0.11704 46.283 46.221 46.338 0 15 12 3 0 0 0 0.84575 1 9476 9476 14.838 0 1 239820 432 4468 259 260 647 647 0.037429382116897614 AFPLPQRL 8 Unmodified _AFPLPQRL_ 0 0 0 L1MB1_dup5130|chr15:42215492-42216398:+|1.5808150021451457|0.3372945338827154|2.23|151.0|42|2|anti-sense L1MB1_dup5130|chr15:42215492-42216398:+|1.5808150021451457|0.3372945338827154|2.23|151.0|42|2|anti-sense L1MB1_dup5130|chr15:42215492-42216398:+|1.5808150021451457|0.3372945338827154|2.23|151.0|42|2|anti-sense MSMS UPN46_class_I_Rep_3 1 471.2796630859375 2 471.281995 940.549437 NaN NaN NaN NaN NaN NaN NaN 87.626 1 87.626 87.126 88.126 0 0 0 0 0.40604 1 21006 21006 2.5775 0.51773 1 433 10192 260 261 648 648 0.07678385376641472 AFPRKKRK 8 Unmodified _AFPRKKRK_ 0 0 0 nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D nc|ENSG00000186376|P51815-2|ZNF75D nc|ENSG00000186376|P51815-2|ZNF75D MSMS UPN48_class_I_Rep_1 5 515.3707885742188 2 515.83526 1029.65597 NaN NaN NaN NaN NaN NaN NaN 38.835 1 42.34 41.84 42.84 3.5048 0 0 0 0.40746 1 6780 6780 0.69038 0.69038 1 434 5152 261 262 649 649 0.14232560661844218 AFPRKKRK 8 Unmodified _AFPRKKRK_ 0 0 0 nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D nc|ENSG00000186376|P51815-2|ZNF75D nc|ENSG00000186376|P51815-2|ZNF75D MSMS UPN48_class_I_Rep_1 5 515.803955078125 2 515.83526 1029.65597 NaN NaN NaN NaN NaN NaN NaN 38.986 1 42.49 41.99 42.99 3.5048 0 0 0 0.40746 1 6826 6826 0.69038 0.088878 1 435 5152 261 262 650 650 0.14232560661844218 AFQGLFLFGFV 11 Unmodified _AFQGLFLFGFV_ 0 0 0 REV__L1PA8A_dup380|chr2:230486218-230488401:-|1.112106143248168|0.1376511463175974|3.01|149.0|100|2|anti-sense REV__L1PA8A_dup380|chr2:230486218-230488401:-|1.112106143248168|0.1376511463175974|3.01|149.0|100|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 416.2284240722656 3 415.893737 1244.65938 -0.13706 -5.7003E-05 2.5186 0.0010475 2.3815 0.00099047 416.2287086661677 96.816 0.316 100.42 100.25 100.56 3.6088 49 32 2 0 0 0 0.64955 1 23325 23325 1.3296 0.11481 1 474600 + 436 30276 262 263 651 651 0.04683765925165062 AFQGLFLFGFV 11 Unmodified _AFQGLFLFGFV_ 0 0 0 REV__L1PA8A_dup380|chr2:230486218-230488401:-|1.112106143248168|0.1376511463175974|3.01|149.0|100|2|anti-sense REV__L1PA8A_dup380|chr2:230486218-230488401:-|1.112106143248168|0.1376511463175974|3.01|149.0|100|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 415.893737 1244.65938 0.082172 3.4175E-05 1.5667 0.00065157 1.6488 0.00068574 416.22840968230196 96.647 0.29043 100.43 100.25 100.54 3.7804 0.0014752 -0.00053038 NaN 1.3296 49 36 2 NaN NaN NaN NaN 0 NaN NaN 0 364850 + 437 30276 262 263 0.04683765925165062 AFRHRILF 8 Unmodified _AFRHRILF_ 0 0 0 REV__ENST00000541340.5_1_11:73962668-73964552:+|nuORF REV__ENST00000541340.5_1_11:73962668-73964552:+|nuORF MSMS UPN46_class_I_Rep_3 1 530.734375 2 530.314161 1058.61377 NaN NaN NaN NaN NaN NaN NaN 118.4 1 118.4 117.9 118.9 0 0 0 0 0.40604 1 29388 29388 2.5775 0.51773 1 + 438 21262 263 264 652 652 0.0868058525345532 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.8222045898438 2 526.821818 1051.62908 0.44626 0.0002351 0.05596 2.9481E-05 0.50222 0.00026458 526.8217583836206 108.74 0.42503 112.37 112.19 112.62 3.6355 170 42 5 0 0 0 0.33654 1 26749 26749 11.64 1.4569 1 252580000 439 5757 264 265 653 653 0.10533452050663072 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MSMS UPN48_class_I_Rep_1 5 526.8218994140625 2 526.821818 1051.62908 0.30145 0.00015881 0.13857 7.3004E-05 0.44003 0.00023181 526.8217883423441 108.73 0.57881 112.37 112.18 112.76 3.6321 264 68 5 0 0 0 0.33654 1 26333 26333 11.64 1.4569 1 148460000 440 5757 264 265 654 654 0.10533452050663072 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 526.821818 1051.62908 0.44611 0.00023502 -0.33457 -0.00017626 0.11154 5.876E-05 526.8218854761676 109.08 0.17675 112.68 112.61 112.78 3.6046 0.24481 -0.00056529 NaN 11.64 32 11 5 NaN NaN NaN NaN 0 NaN NaN 0 33887000 441 5757 264 265 0.10533452050663072 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 526.821818 1051.62908 0.32879 0.00017321 0.36843 0.0001941 0.69722 0.00036731 526.8219300009138 108.76 0.60449 112.29 112.1 112.7 3.5333 -0.14421 0.00017543 NaN 11.64 258 69 4 NaN NaN NaN NaN 0 NaN NaN 0 213360000 442 5757 264 265 0.10533452050663072 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.821818 1051.62908 0.40298 0.0002123 -0.86855 -0.00045757 -0.46557 -0.00024527 526.8211800571108 108.6 0.061485 112.27 112.23 112.29 3.6746 0.067107 -0.0010621 NaN 11.64 8 2 4 NaN NaN NaN NaN 0 NaN NaN 0 15189000 443 5757 264 265 0.10533452050663072 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.821818 1051.62908 0.45755 0.00024105 0.073256 3.8593E-05 0.53081 0.00027964 526.822517794483 108.4 0.028 112.07 112.05 112.08 3.6751 -0.13119 -6.9725E-05 NaN 11.64 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 385290 444 5757 264 265 0.10533452050663072 AFRKAPLLH 9 Unmodified _AFRKAPLLH_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 526.821818 1051.62908 0.45824 0.00024141 0.21848 0.0001151 0.67673 0.00035651 526.821833689117 108.73 0.51394 112.4 112.24 112.75 3.6751 -0.034769 1.7433E-05 NaN 11.64 142 57 4 NaN NaN NaN NaN 0 NaN NaN 0 158100000 445 5757 264 265 0.10533452050663072 AFRRAFKI 8 Unmodified _AFRRAFKI_ 0 0 0 ENST00000460989.5_1_21:44073976-44153535:+|nuORF;nc|ENSG00000160191|O76083-9|PDE9A ENST00000460989.5_1_21:44073976-44153535:+|nuORF ENST00000460989.5_1_21:44073976-44153535:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 504.80908203125 2 504.808711 1007.60287 0.23906 0.00012068 0.55474 0.00028004 0.7938 0.00040072 504.80895351878036 38.406 0.064232 38.406 38.395 38.459 0 5 3 2 0 0 0 0.82752 1 7320 7320 0.79363 0 1 433830 446 6857 265 266 655 655 0.09937182879173179 AFRRPRLN 8 Unmodified _AFRRPRLN_ 0 0 0 L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|201|3|anti-sense L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|201|3|anti-sense L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|201|3|anti-sense MSMS UPN47_class_I_Rep_2 3 515.317626953125 2 515.306867 1028.59918 NaN NaN NaN NaN NaN NaN NaN 62.808 1 66.063 65.563 66.563 3.2558 0 0 0 0.4044 1 14858 14858 4.756 0.81161 1 447 13930 266 267 656 656 0.0860251310532476 AFRWRRRG 8 Unmodified _AFRWRRRG_ 0 0 0 L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|359|3|anti-sense L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|359|3|anti-sense L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|359|3|anti-sense MSMS UPN47_class_I_Rep_3 4 552.8184204101562 2 552.817933 1103.62131 NaN NaN NaN NaN NaN NaN NaN 31.25 1 34.549 34.049 35.049 3.2991 0 0 0 0.40604 1 5300 5300 2.5775 0 1 448 14246 267 268 657 657 0.07364737573720959 AFRYLRRQR 9 Unmodified _AFRYLRRQR_ 0 0 0 nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 MSMS UPN46_class_I_Rep_3 1 633.3682861328125 2 633.37053 1264.72651 NaN NaN NaN NaN NaN NaN NaN 89.25 1 89.25 88.75 89.75 0 0 0 0 0.4007 1 21466 21466 0.52476 0 1 449 16679 268 269 658 658 0.10473233979496399 AFRYLRRQR 9 Unmodified _AFRYLRRQR_ 0 0 0 nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 MULTI-MSMS UPN48_class_I_Rep_2 6 633.3709106445312 2 633.37053 1264.72651 0.49536 0.00031375 -1.6085 -0.0010188 -1.1132 -0.00070505 633.369503241023 86.034 0.25394 89.74 89.617 89.871 3.7058 44 28 2 0 0 0 0.48846 1 20485 20485 1.8442 0 1 115700 450 16679 268 269 659 659 0.10473233979496399 AFRYYLII 8 Unmodified _AFRYYLII_ 0 0 0 REV__L1MD1_dup1210|chr3:58361320-58362196:-|1.7510388694732726|0.0201738429572869|6.44|151.0|12|1|sense REV__L1MD1_dup1210|chr3:58361320-58362196:-|1.7510388694732726|0.0201738429572869|6.44|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 529.8046875 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 18.761 1 22.115 21.615 22.615 3.3545 0 0 0 0.40604 1 1624 1624 2.5775 0 1 + 451 27292 269 270 660 660 0.06955825207955968 AFSTIKNIK 9 Unmodified _AFSTIKNIK_ 0 0 0 REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|20|1|sense REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|20|1|sense MSMS UPN47_class_I_Rep_1 2 511.2934265136719 2 511.305667 1020.59678 NaN NaN NaN NaN NaN NaN NaN 35.266 1 38.942 38.442 39.442 3.6762 0 0 0 0.39428 1 6447 6447 2.0598 0.21551 1 + 452 30558 270 271 661 661 0.08730619856987687 AFVAAPSITV 10 Unmodified _AFVAAPSITV_ 0 0 0 MSTA-int_dup2122|chr10:75581940-75583233:-|5.838273106103786|0.0324062075780511|7.49|150.0|8|1|sense MSTA-int_dup2122|chr10:75581940-75583233:-|5.838273106103786|0.0324062075780511|7.49|150.0|8|1|sense MSTA-int_dup2122|chr10:75581940-75583233:-|5.838273106103786|0.0324062075780511|7.49|150.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.27728271484375 2 488.279118 974.543683 -0.25792 -0.00012593 -1.3104 -0.00063986 -1.5683 -0.00076579 488.27743788116805 41.135 0.45336 44.372 44.024 44.477 3.2372 49 33 2 0 0 0 0.46161 1 8314 8314 14.838 4.0143 1 66675 453 16548 271 272 662 662 0.05539242074326012 AFVRYLKFR 9 Unmodified _AFVRYLKFR_ 0 0 0 L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|12|2|sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|12|2|sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 600.3564453125 2 600.356025 1198.6975 NaN NaN NaN NaN NaN NaN NaN 20.235 1 23.781 23.281 24.281 3.5454 0 0 0 0.40038 1 1668 1668 0.6015 0.14316 1 454 10275 272 273 663 663 0.10609696630513099 AFVTKLLFFLA 11 Unmodified _AFVTKLLFFLA_ 0 0 0 REV__L1P3_dup1436|chr6:154781099-154781616:+|1.0151658880547338|0.0315581632271562|5.01|151.0|25|3|anti-sense REV__L1P3_dup1436|chr6:154781099-154781616:+|1.0151658880547338|0.0315581632271562|5.01|151.0|25|3|anti-sense MSMS UPN47_class_I_Rep_3 4 635.3851318359375 2 635.383917 1268.75328 NaN NaN NaN NaN NaN NaN NaN 107.8 1 111.34 110.84 111.84 3.5382 0 0 0 0.35398 1 26326 26326 8.7454 0 1 + 455 28871 273 274 664 664 0.1296548502746191 AFVVLPLVPN 10 Unmodified _AFVVLPLVPN_ 0 0 0 REV__nc|ENSG00000196503|Q6T311-2|ARL9 REV__nc|ENSG00000196503|Q6T311-2|ARL9 MSMS UPN47_class_I_Rep_3 4 534.8275146484375 2 534.826235 1067.63792 NaN NaN NaN NaN NaN NaN NaN 108.57 1 112.11 111.61 112.61 3.5382 0 0 0 0.53105 1 26589 26589 3.5965 1.2938 1 + 456 21044 274 275 665 665 0.10680380896474162 AFWWLVVA 8 Unmodified _AFWWLVVA_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MSMS UPN46_class_I_Rep_3 1 496.2955322265625 2 496.273638 990.532724 NaN NaN NaN NaN NaN NaN NaN 43.873 1 43.873 43.373 44.373 0 0 0 0 0.40581 1 8795 8795 2.8892 0 1 457 1655 275 276 666 666 0.03707884490688684 AFWWLVVA 8 Unmodified _AFWWLVVA_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MSMS UPN46_class_I_Rep_3 1 496.29547119140625 2 496.273638 990.532724 NaN NaN NaN NaN NaN NaN NaN 44.251 1 44.251 43.751 44.751 0 0 0 0 0.40581 1 8902 8902 2.8892 0 1 458 1655 275 276 667 667 0.03707884490688684 AFYHARKY 8 Unmodified _AFYHARKY_ 0 0 0 L1MC4a_dup8039|chr14:77564452-77564958:+|1.305016443490887|0.0083168650104992|7.29|151.0|4|1|sense L1MC4a_dup8039|chr14:77564452-77564958:+|1.305016443490887|0.0083168650104992|7.29|151.0|4|1|sense L1MC4a_dup8039|chr14:77564452-77564958:+|1.305016443490887|0.0083168650104992|7.29|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 528.2743530273438 2 528.274701 1054.53485 NaN NaN NaN NaN NaN NaN NaN 116.11 1 119.61 119.11 120.11 3.4965 0 0 0 0.40738 1 28336 28336 0.79363 0 1 459 11617 276 277 668 668 0.009763132285115717 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7425537109375 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 37.25 1 40.757 40.257 41.257 3.507 0 0 0 0.40404 1 6314 6314 5.2307 0 1 460 12783 277 278 669 669 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.74237060546875 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 39.256 1 42.76 42.26 43.26 3.5048 0 0 0 0.35537 1 6909 6909 20.871 0 1 461 12783 277 278 670 670 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7427978515625 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 39.419 1 42.924 42.424 43.424 3.5048 0 0 0 0.38221 1 6958 6958 14.582 0 1 462 12783 277 278 671 671 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7419128417969 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 39.752 1 43.257 42.757 43.757 3.5048 0 0 0 0.36148 1 7056 7056 19.439 0 1 463 12783 277 278 672 672 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7425842285156 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 41.635 1 45.141 44.641 45.641 3.506 0 0 0 0.36148 1 7611 7611 19.439 1.304 1 464 12783 277 278 673 673 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.741943359375 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 38.973 1 42.628 42.128 43.128 3.6557 0 0 0 0.38221 1 6761 6761 14.582 0 1 465 12783 277 278 674 674 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7424011230469 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 40.485 1 44.136 43.636 44.636 3.6509 0 0 0 0.33253 1 7205 7205 26.341 0 1 466 12783 277 278 675 675 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.74224853515625 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 40.608 1 44.259 43.759 44.759 3.6509 0 0 0 0.33253 1 7242 7242 26.341 0 1 467 12783 277 278 676 676 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7423095703125 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 40.735 1 44.386 43.886 44.886 3.6509 0 0 0 0.33253 1 7280 7280 26.341 0 1 468 12783 277 278 677 677 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.742431640625 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 40.831 1 44.482 43.982 44.982 3.6509 0 0 0 0.33253 1 7309 7309 26.341 0 1 469 12783 277 278 678 678 -0.020624669284529773 AFYHNIAF 8 Unmodified _AFYHNIAF_ 0 0 0 L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense L1ME3Cz_dup684|chr1:198742954-198743384:+|1.9507357773012728|0.1207022635475976|4.01|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7422180175781 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 40.947 1 44.598 44.098 45.098 3.6509 0 0 0 0.36148 1 7341 7341 19.439 0 1 470 12783 277 278 679 679 -0.020624669284529773 AFYQSIYSL 9 Unmodified _AFYQSIYSL_ 0 0 0 L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|53|2|anti-sense L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|53|2|anti-sense L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_2 6 546.2561645507812 2 546.274032 1090.53351 NaN NaN NaN NaN NaN NaN NaN 52.684 1 56.32 55.82 56.82 3.6367 0 0 0 0.35339 1 10969 10969 7.9102 0.62092 1 471 9106 278 279 680 680 -0.008133656509016873 AFYTDTVQF 9 Unmodified _AFYTDTVQF_ 0 0 0 REV__Kanga1a_dup561|chr11:78379592-78380154:+|1.6506820049228246|0.0114804280353574|7.17|151.0|26|1|anti-sense REV__Kanga1a_dup561|chr11:78379592-78380154:+|1.6506820049228246|0.0114804280353574|7.17|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.2454833984375 2 546.25584 1090.49713 0.34302 0.00018737 -0.53416 -0.00029179 -0.19115 -0.00010441 546.2554175497785 52.438 0.95106 55.997 55.761 56.712 3.5585 135 67 3 0 0 0 0.20276 1 11668 11668 20.454 3.3407 1 583080 + 472 23990 279 280 681 681 -0.04450242547613925 AFYTDTVQF 9 Unmodified _AFYTDTVQF_ 0 0 0 REV__Kanga1a_dup561|chr11:78379592-78380154:+|1.6506820049228246|0.0114804280353574|7.17|151.0|26|1|anti-sense REV__Kanga1a_dup561|chr11:78379592-78380154:+|1.6506820049228246|0.0114804280353574|7.17|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.2455444335938 2 546.25584 1090.49713 0.48638 0.00026569 -0.31966 -0.00017462 0.16672 9.107E-05 546.2555237838386 52.891 0.89024 56.086 55.825 56.716 3.1948 138 56 3 0 0 0 0.28552 1 11935 11935 14.838 1.7958 1 486860 + 473 23990 279 280 682 682 -0.04450242547613925 AFYTMVLR 8 Unmodified _AFYTMVLR_ 0 0 0 MLT1L_dup6989|chrX:118432055-118432517:-|1.286554165718469|0.281394132204018|2.19|151.0|25|1|anti-sense MLT1L_dup6989|chrX:118432055-118432517:-|1.286554165718469|0.281394132204018|2.19|151.0|25|1|anti-sense MLT1L_dup6989|chrX:118432055-118432517:-|1.286554165718469|0.281394132204018|2.19|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_3 7 500.7669677734375 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 68.557 1 72.066 71.566 72.566 3.5094 0 0 0 0.40643 1 15727 15727 2.0598 0.57785 1 474 16487 280 281 683 683 0.021393194050574493 AGAEESELQAY 11 Unmodified _AGAEESELQAY_ 0 0 0 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF;ENST00000602227.1_1_19:7598291-7598678:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MULTI-MSMS UPN47_class_I_Rep_1 2 584.2608642578125 2 584.26185 1166.50915 0.25744 0.00015041 0.60132 0.00035133 0.85876 0.00050174 584.2616990747368 50.824 0.38745 54.453 54.306 54.694 3.6285 27 18 2 0 0 0 0.48412 1 11196 11196 8.1555 0 1 49227 475 1355 281 282 684 684 -0.06744670595094249 AGAEESELQAY 11 Unmodified _AGAEESELQAY_ 0 0 0 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF;ENST00000602227.1_1_19:7598291-7598678:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MSMS UPN47_class_I_Rep_2 3 584.2630004882812 2 584.26185 1166.50915 NaN NaN NaN NaN NaN NaN NaN 51.216 1 54.555 54.055 55.055 3.3386 0 0 0 0.32232 1 11326 11326 10.8 0.64894 1 476 1355 281 282 685 685 -0.06744670595094249 AGALVELVINF 11 Unmodified _AGALVELVINF_ 0 0 0 REV__L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|87|2|sense REV__L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|87|2|sense MSMS UPN48_class_I_Rep_2 6 573.330322265625 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 88.552 1 92.29 91.79 92.79 3.7379 0 0 0 0.38417 1 21080 21080 5.2969 0.39987 1 + 477 29423 282 283 686 686 0.0826715819994206 AGDGQRYFS 9 Unmodified _AGDGQRYFS_ 0 0 0 nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1 nc|ENSG00000162804|Q8TER0-5|SNED1 nc|ENSG00000162804|Q8TER0-5|SNED1 MULTI-MSMS UPN46_class_I_Rep_3 1 500.7276916503906 2 500.727781 999.441008 0.27705 0.00013873 0.17664 8.8451E-05 0.45369 0.00022718 500.7277392508359 40.248 0.77941 40.248 39.938 40.717 0 166 88 3 0 0 0 0.23293 1 7770 7770 18.146 5.6148 1 443750 478 3962 283 284 687 687 -0.058734506644327666 AGDIKWIY 8 Unmodified _AGDIKWIY_ 0 0 0 ENSG00000144407.9,PTH2R,chr2,+,I13.1,208490681,208493263|38|4.74|1|intron;chr2:208360237-208428201|119|17.28|0.52|5.06|+|ENST00000617735|PTH2R,PTH2R;ENSG00000144407|ENST00000272847|PTH2R ENSG00000144407.9,PTH2R,chr2,+,I13.1,208490681,208493263|38|4.74|1|intron ENSG00000144407.9,PTH2R,chr2,+,I13.1,208490681,208493263|38|4.74|1|intron MSMS UPN46_class_I_Rep_3 1 483.2696228027344 2 483.258185 964.501818 NaN NaN NaN NaN NaN NaN NaN 49.041 1 49.041 48.541 49.541 0 0 0 0 0.39408 1 10267 10267 10.183 0.83596 1 479 600 284 285 688 688 0.018146863857850803 AGESLLRLPW 10 Unmodified _AGESLLRLPW_ 0 0 0 REV__nc|ENSG00000162129|Q9H078-4|CLPB REV__nc|ENSG00000162129|Q9H078-4|CLPB MSMS UPN47_class_I_Rep_3 4 571.3222045898438 2 571.321848 1140.62914 NaN NaN NaN NaN NaN NaN NaN 59.441 1 62.606 62.106 63.106 3.1651 0 0 0 0.53105 1 13887 13887 1.4819 0 1 + 480 32031 285 286 689 689 0.06445407260002867 AGHDAHHH 8 Unmodified _AGHDAHHH_ 0 0 0 REV__ENST00000556743.5_1_14:24034770-24035145:-|nuORF REV__ENST00000556743.5_1_14:24034770-24035145:-|nuORF MSMS UPN47_class_I_Rep_3 4 440.7994689941406 2 441.1917 880.368846 NaN NaN NaN NaN NaN NaN NaN 82.867 1 86.204 85.704 86.704 3.337 0 0 0 0.40738 1 20775 20775 0.79363 0 1 + 481 22889 286 287 690 690 -0.07612320227485725 AGHDAHHH 8 Unmodified _AGHDAHHH_ 0 0 0 REV__ENST00000556743.5_1_14:24034770-24035145:-|nuORF REV__ENST00000556743.5_1_14:24034770-24035145:-|nuORF MSMS UPN47_class_I_Rep_3 4 440.7994384765625 2 441.1917 880.368846 NaN NaN NaN NaN NaN NaN NaN 86.837 1 90.217 89.717 90.717 3.3801 0 0 0 0.40738 1 21764 21764 0.79363 0 1 + 482 22889 286 287 691 691 -0.07612320227485725 AGHLSTAQY 9 Unmodified _AGHLSTAQY_ 0 0 0 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 474.2325439453125 2 474.232699 946.450845 -0.045338 -2.1501E-05 -0.081104 -3.8462E-05 -0.12644 -5.9963E-05 474.23260502502677 28.305 1.1312 28.305 27.997 29.128 0 162 84 3 0 0 0 0.023254 1 4326 4326 61.357 21.4 1 456580 483 2096 287 288 692 692 -0.024522626590623986 AGISFIINR 9 Unmodified _AGISFIINR_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B nc|ENSG00000196275|Q86UP8-2|GTF2IRD2 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2 MULTI-MSMS UPN46_class_I_Rep_3 1 495.7908935546875 2 495.790184 989.565815 0.23309 0.00011556 -0.42726 -0.00021183 -0.19417 -9.627E-05 495.78985172503104 61.288 0.22414 61.288 61.172 61.396 0 44 25 2 0 0 0 0.037922 3 13634 13622;13634;13642 53.833 15.657 1 176640 484 4681 288 289 693;694;695 694 0.0706146654274562 AGKLAGRR 8 Unmodified _AGKLAGRR_ 0 0 0 REV__ENST00000317449.4_1_11:62455042-62455312:-|nuORF REV__ENST00000317449.4_1_11:62455042-62455312:-|nuORF MSMS UPN47_class_I_Rep_3 4 414.7616271972656 2 414.761761 827.508969 NaN NaN NaN NaN NaN NaN NaN 85.861 1 89.233 88.733 89.733 3.3716 0 0 0 0.40746 1 21515 21515 0.69038 0 1 + 485 21721 289 290 696 696 0.08831463776903092 AGLRIGVHF 9 Unmodified _AGLRIGVHF_ 0 0 0 ENST00000390655.10_2_2:87068783-87068945:-|nuORF ENST00000390655.10_2_2:87068783-87068945:-|nuORF ENST00000390655.10_2_2:87068783-87068945:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.28533935546875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.125 1 57.707 57.207 58.207 3.5817 0 0 0 0.39428 1 11410 11410 2.0598 0 1 486 6514 290 291 697 697 0.07004903608174118 AGPALFEQWI 10 Unmodified _AGPALFEQWI_ 0 0 0 REV__nc|ENSG00000182732|P49758-12|RGS6 REV__nc|ENSG00000182732|P49758-12|RGS6 MSMS UPN47_class_I_Rep_2 3 566.2904663085938 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 28.848 1 32.346 31.846 32.846 3.4986 0 0 0 0.53105 1 4535 4535 3.2813 0 1 + 487 20763 291 292 698 698 0.01598029477304408 AGPEKARHQR 10 Unmodified _AGPEKARHQR_ 0 0 0 REV__nc|ENSG00000149179|Q9H6J7-4|CSTPP1 REV__nc|ENSG00000149179|Q9H6J7-4|CSTPP1 MULTI-MSMS UPN47_class_I_Rep_1 2 575.816162109375 2 575.31542 1148.61629 0.20325 0.00011693 0.60395 0.00034746 0.8072 0.00046439 575.8167910755201 49.359 1.5525 53.018 52.353 53.905 3.6592 207 100 4 0 0 0 0.54466 1 10793 10793 6.2058 6.2058 1 394180 + 488 32011 292 293 699 699 0.047923889204639636 AGQAASTWPTL 11 Unmodified _AGQAASTWPTL_ 0 0 0 ENST00000464008.6_1_1:26146770-26147010:+|nuORF ENST00000464008.6_1_1:26146770-26147010:+|nuORF ENST00000464008.6_1_1:26146770-26147010:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 551.7804565429688 2 551.780013 1101.54547 0.035539 1.961E-05 -0.037429 -2.0653E-05 -0.0018899 -1.0428E-06 551.7800053146442 39.1 0.56816 42.479 42.187 42.756 3.3785 58 31 3 0 0 0 0.63951 1 7687 7687 4.1895 0.24511 1 146060 489 6879 293 294 700 700 -0.0012374890770843194 AGRKRELL 8 Unmodified _AGRKRELL_ 0 0 0 ENST00000367996.5_1_1:161160742-161160913:-|nuORF;nc|ENSG00000158859|O75173-2|ADAMTS4 ENST00000367996.5_1_1:161160742-161160913:-|nuORF ENST00000367996.5_1_1:161160742-161160913:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 63.805 1 67.061 66.561 67.561 3.2556 0 0 0 0.40364 1 15158 15158 5.7604 0.52976 1 490 6358 294 295 701 701 0.10392288636899139 AGRLYYNFDL 10 Unmodified _AGRLYYNFDL_ 0 0 0 L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 616.3080444335938 2 616.308938 1230.60332 0.4107 0.00025312 -0.17223 -0.00010614 0.23847 0.00014697 616.308729661378 56.921 0.34822 60.379 60.264 60.613 3.4572 54 30 2 0 0 0 0.56118 1 13052 13052 2.9952 0.26005 1 169930 491 9504 295 296 702 702 -0.0027548698228656576 AGRLYYNFDL 10 Unmodified _AGRLYYNFDL_ 0 0 0 L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 616.3096313476562 2 616.308938 1230.60332 0.3733 0.00023007 -0.22771 -0.00014034 0.14558 8.9724E-05 616.3087676335905 57.33 0.6046 60.498 60.31 60.914 3.1681 84 51 3 0 0 0 0.56118 1 13282 13282 2.9952 0.26005 1 135570 492 9504 295 296 703 703 -0.0027548698228656576 AGRLYYNFDL 10 Unmodified _AGRLYYNFDL_ 0 0 0 L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|274|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.3092651367188 2 616.308938 1230.60332 0.5964 0.00036757 0.025438 1.5678E-05 0.62184 0.00038324 616.30882673679 57.169 0.85905 60.684 60.407 61.266 3.5142 112 71 2 0 0 0 0.56118 1 12404 12404 2.9952 0.26005 1 257580 493 9504 295 296 704 704 -0.0027548698228656576 AGSGLGVPPHS 11 Unmodified _AGSGLGVPPHS_ 0 0 0 nc|ENSG00000032444|Q8IY17-2|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6 nc|ENSG00000032444|Q8IY17-2|PNPLA6 nc|ENSG00000032444|Q8IY17-2|PNPLA6 MSMS UPN46_class_I_Rep_3 1 489.75341796875 2 489.753798 977.493044 NaN NaN NaN NaN NaN NaN NaN 33.099 1 33.099 32.599 33.599 0 0 0 0 0.37149 1 5749 5749 7.609 0 1 494 16621 296 297 705 705 0.0033971274932582674 AGTDFSFTYL 10 Unmodified _AGTDFSFTYL_ 0 0 0 L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|232|1|anti-sense L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|232|1|anti-sense L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|232|1|anti-sense MSMS UPN47_class_I_Rep_2 3 561.2593994140625 2 561.261122 1120.50769 NaN NaN NaN NaN NaN NaN NaN 67.65 1 70.913 70.413 71.413 3.2636 0 0 0 0.53105 1 16328 16328 1.6526 0.85899 1 495 14743 297 298 706 706 -0.047742598932018154 AGTNPGGGFGA 11 Unmodified _AGTNPGGGFGA_ 0 0 0 REV__ENSG00000067445|ENST00000173898|TRO REV__ENSG00000067445|ENST00000173898|TRO MULTI-MSMS UPN48_class_I_Rep_1 5 453.20965576171875 2 453.209224 904.403895 0.017407 7.8888E-06 0.1074 4.8676E-05 0.12481 5.6564E-05 453.2096783027269 99.745 0.29366 103.35 103.29 103.58 3.6065 42 33 3 0 0 0 0.67264 1 24096 24096 1.1933 0.39971 1 62714 + 496 17776 298 299 707 707 -0.05213122210182064 AGVESLDFRL 10 Unmodified _AGVESLDFRL_ 0 0 0 nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1 nc|ENSG00000100592|Q9Y4D1-3|DAAM1 nc|ENSG00000100592|Q9Y4D1-3|DAAM1 MSMS UPN47_class_I_Rep_1 2 553.8133544921875 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 35.786 1 39.462 38.962 39.962 3.6762 0 0 0 0.53105 1 6604 6604 5.7319 0.97584 1 497 1518 299 300 708 708 0.028208241263882883 AGVEYLWLF 9 Unmodified _AGVEYLWLF_ 0 0 0 THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|36|1|anti-sense THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|36|1|anti-sense THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_1 5 549.3012084960938 2 549.286943 1096.55933 NaN NaN NaN NaN NaN NaN NaN 100.57 1 104.18 103.68 104.68 3.6084 0 0 0 0.35339 1 24291 24291 7.9102 0 1 498 32952 300 301 709 709 0.014915285913730258 AGVPMYVKQI 10 Unmodified _AGVPMYVKQI_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|130|3|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|130|3|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|130|3|sense MSMS UPN47_class_I_Rep_1 2 553.3053588867188 2 553.307352 1104.60015 NaN NaN NaN NaN NaN NaN NaN 32.234 1 35.948 35.448 36.448 3.7131 0 0 0 0.53105 1 5521 5521 1.6526 0.17072 1 499 8513 301 302 710 710 0.05203546639359047 AGVSEVAHHTI 11 Unmodified _AGVSEVAHHTI_ 0 0 0 REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|128|3|anti-sense REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|128|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.7916870117188 2 560.790912 1119.56727 0.32029 0.00017961 -0.12088 -6.7787E-05 0.19941 0.00011183 560.7908834443377 31.224 0.58568 34.925 34.685 35.271 3.7015 113 63 2 0 0 0 0.65559 1 4667 4667 2.7352 0.43246 1 137710 + 500 17379 302 303 711 711 0.012270558408545185 AGYSPLLAAF 10 Unmodified _AGYSPLLAAF_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|49|2|anti-sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|49|2|anti-sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_2 6 505.2716369628906 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.735 1 83.368 82.868 83.868 3.6331 0 0 0 0.53105 1 18954 18954 30.637 4.3684 1 501 32889 303 304 712 712 0.024109555572863428 AGYSPLLAAF 10 Unmodified _AGYSPLLAAF_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|49|2|anti-sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|49|2|anti-sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|49|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 505.2712707519531 2 505.271293 1008.52803 0.30477 0.00015399 -0.41556 -0.00020997 -0.1108 -5.5983E-05 505.27119902182443 80.075 0.049385 83.718 83.697 83.746 3.6423 12 7 2 0 0 0 0.22489 1 18975 18975 57.471 7.5383 1 1228300 502 32889 303 304 713 713 0.024109555572863428 AHAKPKPNL 9 Unmodified _AHAKPKPNL_ 0 0 0 L1MEg_dup6034|chr6:136672172-136672719:+|1.1053349709872842|0.0853560400353645|3.69|151.0|31|2|anti-sense L1MEg_dup6034|chr6:136672172-136672719:+|1.1053349709872842|0.0853560400353645|3.69|151.0|31|2|anti-sense L1MEg_dup6034|chr6:136672172-136672719:+|1.1053349709872842|0.0853560400353645|3.69|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.29144287109375 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 108.38 1 108.38 107.88 108.88 0 0 0 0 0.36505 1 26499 26499 7.2892 2.0586 1 503 13404 304 305 714 714 0.0778488626260696 AHAKPKPNL 9 Unmodified _AHAKPKPNL_ 0 0 0 L1MEg_dup6034|chr6:136672172-136672719:+|1.1053349709872842|0.0853560400353645|3.69|151.0|31|2|anti-sense L1MEg_dup6034|chr6:136672172-136672719:+|1.1053349709872842|0.0853560400353645|3.69|151.0|31|2|anti-sense L1MEg_dup6034|chr6:136672172-136672719:+|1.1053349709872842|0.0853560400353645|3.69|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.2903137207031 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 108.51 1 108.51 108.01 109.01 0 0 0 0 0.36505 1 26542 26542 7.2892 2.0586 1 504 13404 304 305 715 715 0.0778488626260696 AHASPKMK 8 Unmodified _AHASPKMK_ 0 0 0 REV__L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|5|1|sense REV__L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 435.2510986328125 2 435.23673 868.458907 NaN NaN NaN NaN NaN NaN NaN 83.395 1 86.807 86.307 87.307 3.4116 0 0 0 0.40404 1 20786 20786 5.2307 2.3415 1 + 505 27753 305 306 716 716 0.019415930567333817 AHAWLTVL 8 Unmodified _AHAWLTVL_ 0 0 0 ENST00000577995.5_1_18:3593818-3596682:+|nuORF;ENST00000317114.1_1_18:3594184-3596682:+|nuORF ENST00000577995.5_1_18:3593818-3596682:+|nuORF ENST00000577995.5_1_18:3593818-3596682:+|nuORF MSMS UPN47_class_I_Rep_1 2 455.75836181640625 2 455.760895 909.507237 NaN NaN NaN NaN NaN NaN NaN 27.495 1 31.262 30.762 31.762 3.7662 0 0 0 0.40625 1 4099 4099 2.3027 0 1 506 6140 306 307 717 717 0.04886409968275984 AHCHCHYYY 9 Unmodified _AHCHCHYYY_ 0 0 0 ENST00000306107.9_3_3:105085858-105238971:+|nuORF ENST00000306107.9_3_3:105085858-105238971:+|nuORF ENST00000306107.9_3_3:105085858-105238971:+|nuORF MSMS UPN47_class_I_Rep_3 4 598.7593994140625 2 598.723661 1195.43277 NaN NaN NaN NaN NaN NaN NaN 20.409 1 23.758 23.258 24.258 3.3496 0 0 0 0.40038 1 2099 2099 0.6015 0 1 507 6092 307 308 718 718 -0.15713044177050506 AHDIASKII 9 Unmodified _AHDIASKII_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-SECPEP UPN47_class_I_Rep_1 2 483.6466064453125 2 484.282192 966.549831 -0.16505 -7.9928E-05 3.1929 0.0015463 3.0279 0.0014664 484.28218352314366 44.517 0.18515 48.212 48.079 48.265 3.6951 17 14 2 0 0 0 0.12235 1 9253 9253 4.756 0.81161 1 37938 + 508 19268 308 309 719 719 0.06521760305861335 AHDIFSFFIA 10 Unmodified _AHDIFSFFIA_ 0 0 0 L1MA4_dup2608|chr4:106177138-106180401:-|1.048406138261794|0.0321968156672146|5.03|151.0|195|3|anti-sense L1MA4_dup2608|chr4:106177138-106180401:-|1.048406138261794|0.0321968156672146|5.03|151.0|195|3|anti-sense L1MA4_dup2608|chr4:106177138-106180401:-|1.048406138261794|0.0321968156672146|5.03|151.0|195|3|anti-sense MSMS UPN47_class_I_Rep_2 3 584.2930908203125 2 584.295299 1166.57605 NaN NaN NaN NaN NaN NaN NaN 61.832 1 65.092 64.592 65.592 3.2594 0 0 0 0.53105 1 14562 14562 3.5965 0.31518 1 509 9670 309 310 720 720 -0.0005797052267553227 AHDVMFFLKM 10 Unmodified _AHDVMFFLKM_ 0 0 0 ENST00000505925.1_1_5:107062182-107062734:+|nuORF ENST00000505925.1_1_5:107062182-107062734:+|nuORF ENST00000505925.1_1_5:107062182-107062734:+|nuORF MSMS UPN48_class_I_Rep_3 7 619.805908203125 2 619.806662 1237.59877 NaN NaN NaN NaN NaN NaN NaN 59.795 1 63.312 62.812 63.812 3.5169 0 0 0 0.53105 1 13081 13081 1.4819 0 1 510 7154 310 311 721 721 -0.010524107210812872 AHEQLSRLFGM 11 Unmodified _AHEQLSRLFGM_ 0 0 0 HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 644.8270874023438 2 644.826972 1287.63939 0.44036 0.00028396 0.036868 2.3774E-05 0.47723 0.00030773 644.8270791577531 50.102 0.53893 53.626 53.379 53.918 3.5246 58 33 2 0 0 0 0.54441 1 10142 10142 6.6304 3.3491 1 187190 511 8299 311 312 722 722 0.007076469228877613 AHEQLSRLFGM 11 Unmodified _AHEQLSRLFGM_ 0 0 0 HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 645.3290405273438 2 644.826972 1287.63939 0.45781 0.00029521 -0.047383 -3.0554E-05 0.41043 0.00026465 644.8268582462288 49.952 0.64926 53.646 53.272 53.921 3.6946 69 41 2 0 0 0 0.64297 1 10179 10179 3.8763 0.59502 1 208370 512 8299 311 312 723 723 0.007076469228877613 AHEQLSRLFGM 11 Unmodified _AHEQLSRLFGM_ 0 0 0 HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|107|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 644.82763671875 2 644.826972 1287.63939 0.53933 0.00034777 -0.18264 -0.00011777 0.35669 0.00023 645.328419494349 50.032 0.63428 53.653 53.416 54.05 3.621 78 38 3 0 0 0 0.64297 2 10066 10066;10147 3.8763 0.59502 1 241090 513 8299 311 312 724;725 724 0.007076469228877613 AHFVQRKED 9 Unmodified _AHFVQRKED_ 0 0 0 REV__nc|ENSG00000151914|Q03001-3|DST REV__nc|ENSG00000151914|Q03001-3|DST MULTI-MSMS UPN47_class_I_Rep_1 2 565.2910766601562 2 565.291079 1128.56761 -0.061104 -3.4541E-05 0.14281 8.0732E-05 0.081711 4.619E-05 565.2911855454054 31.778 0.66621 35.507 35.187 35.854 3.7293 110 51 3 0 0 0 0.49187 1 5315 5315 1.4819 0 1 163010 + 514 32014 312 313 726 726 0.008464755607292318 AHFYRQFS 8 Unmodified _AHFYRQFS_ 0 0 0 REV__ENSG00000171408|ENST00000308191|PDE7B REV__ENSG00000171408|ENST00000308191|PDE7B MULTI-SECPEP UPN46_class_I_Rep_3 1 527.77099609375 2 528.256508 1054.49846 0.17647 9.3221E-05 0.024672 1.3033E-05 0.20114 0.00010625 528.2561007642453 34.68 0.07032 34.68 34.629 34.7 0 5 4 2 0 0 0 0.72333 1 6216 6216 0.79363 0 1 34434 + 515 20404 313 314 727 727 -0.02660563668200666 AHFYVVFGEM 10 Unmodified _AHFYVVFGEM_ 0 0 0 L1MA9_dup1188|chr2:24527093-24528341:-|3.4607184918291645|0.0632237304971052|5.77|151.0|47|1|anti-sense L1MA9_dup1188|chr2:24527093-24528341:-|3.4607184918291645|0.0632237304971052|5.77|151.0|47|1|anti-sense L1MA9_dup1188|chr2:24527093-24528341:-|3.4607184918291645|0.0632237304971052|5.77|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 600.2822875976562 2 600.281334 1198.54812 NaN NaN NaN NaN NaN NaN NaN 80.489 1 83.976 83.476 84.476 3.4874 0 0 0 0.53105 1 20053 20053 3.5965 0.31518 1 516 10102 314 315 728 728 -0.04321616774427639 AHGFFFYMPH 10 Unmodified _AHGFFFYMPH_ 0 0 0 REV__ENSG00000181009|ENST00000641181|OR52N5 REV__ENSG00000181009|ENST00000641181|OR52N5 MULTI-MSMS UPN47_class_I_Rep_1 2 627.281982421875 2 627.281669 1252.54878 -0.062154 -3.8988E-05 1.1738 0.00073628 1.1116 0.00069729 627.2823735693521 15.557 0.30861 19.054 18.934 19.242 3.4968 51 34 2 0 0 0 0.56478 1 863 863 0.45834 0 1 29868 + 517 20720 315 316 729 729 -0.06738777334703627 AHGFVLFCFV 10 Unmodified _AHGFVLFCFV_ 0 0 0 HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|233|1|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|233|1|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|233|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.7702026367188 2 570.288963 1138.56337 0.32829 0.00018722 1.9723 0.0011248 2.3006 0.001312 570.2899077194371 67.776 0.31585 71.137 71.019 71.335 3.3611 26 21 2 0 0 0 0.84575 1 16368 16368 4.3292 2.0265 1 50327 518 8098 316 317 730 730 -0.0003670518658509536 AHGPPSARRF 10 Unmodified _AHGPPSARRF_ 0 0 0 REV__ENST00000460899.5_1_10:76995169-76995460:-|nuORF REV__ENST00000460899.5_1_10:76995169-76995460:-|nuORF MSMS UPN47_class_I_Rep_2 3 548.2920532226562 2 548.293956 1094.57336 NaN NaN NaN NaN NaN NaN NaN 80.289 1 83.658 83.158 84.158 3.3694 0 0 0 0.53105 1 19998 19998 1.8442 0.19162 1 + 519 22426 317 318 731 731 0.02985618863021955 AHGPPSARRF 10 Unmodified _AHGPPSARRF_ 0 0 0 REV__ENST00000460899.5_1_10:76995169-76995460:-|nuORF REV__ENST00000460899.5_1_10:76995169-76995460:-|nuORF MSMS UPN48_class_I_Rep_3 7 548.2919311523438 2 548.293956 1094.57336 NaN NaN NaN NaN NaN NaN NaN 79.728 1 83.37 82.87 83.87 3.6423 0 0 0 0.53105 1 18910 18910 1.8442 0.19162 1 + 520 22426 317 318 732 732 0.02985618863021955 AHGYAHPKRG 10 Unmodified _AHGYAHPKRG_ 0 0 0 REV__ENSG00000124496.12,TRERF1,chr6,-,I7.1,42263569,42264703|35|6.93|2|intron REV__ENSG00000124496.12,TRERF1,chr6,-,I7.1,42263569,42264703|35|6.93|2|intron MULTI-MSMS UPN47_class_I_Rep_2 3 547.2848510742188 2 547.286131 1092.55771 0.35294 0.00019316 -1.4557 -0.00079668 -1.1027 -0.00060352 547.2852916401235 48.633 0.59671 51.98 51.794 52.39 3.3465 41 33 2 0 0 0 0.56333 1 10653 10653 1.4819 0 1 99513 + 521 18810 318 319 733 733 0.015133323459622261 AHGYKGERPYL 11 Unmodified _AHGYKGERPYL_ 0 0 0 REV__ENSG00000172009|ENST00000307741|THOP1 REV__ENSG00000172009|ENST00000307741|THOP1 MSMS UPN48_class_I_Rep_2 6 645.8325805664062 2 645.833111 1289.65167 NaN NaN NaN NaN NaN NaN NaN 61.58 1 65.054 64.554 65.554 3.4738 0 0 0 0.38417 1 13691 13691 4.1895 0.59301 1 + 522 20432 319 320 734 734 0.018430066576229365 AHHKFIGALF 10 Unmodified _AHHKFIGALF_ 0 0 0 REV__Charlie1a_dup584|chr2:31989259-31989657:+|1.2798615453536972|0.0045522263358015|8.14|151.0|20|2|anti-sense REV__Charlie1a_dup584|chr2:31989259-31989657:+|1.2798615453536972|0.0045522263358015|8.14|151.0|20|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.8182983398438 2 570.819276 1139.624 0.52153 0.0002977 -2.0225 -0.0011545 -1.501 -0.00085679 570.8186462157876 70.764 0.56616 74.283 74.044 74.61 3.5185 87 59 2 0 0 0 0.38932 1 16378 16378 20.454 0.039092 1 319130 + 523 17348 320 321 735 735 0.05977148188026149 AHHKRPHV 8 Unmodified _AHHKRPHV_ 0 0 0 L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|38|3|sense L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|38|3|sense L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|38|3|sense MSMS UPN47_class_I_Rep_3 4 491.27947998046875 2 491.278109 980.541666 NaN NaN NaN NaN NaN NaN NaN 69.448 1 72.652 72.152 73.152 3.2044 0 0 0 0.40746 1 16934 16934 0.69038 0 1 524 10986 321 322 736 736 0.050616708997381465 AHHRRRNKKNK 11 Unmodified _AHHRRRNKKNK_ 0 0 0 REV__ENSG00000277531|ENST00000617053|PNMA8C REV__ENSG00000277531|ENST00000617053|PNMA8C MULTI-SECPEP UPN46_class_I_Rep_3 1 481.61920166015625 3 482.287136 1443.83958 -0.33265 -0.00016043 0.89056 0.0004295 0.5579 0.00026907 482.2876742283485 13.047 0.060963 13.047 13.011 13.072 0 7 4 2 0 0 0 22.551 1 280 280 0.094841 0 1 36636 + 525 21440 322 323 737 737 0.13541302425369395 AHHVPRQLY 9 Unmodified _AHHVPRQLY_ 0 0 0 REV__ENST00000468332.6_1_10:79616610-79649212:-|nuORF REV__ENST00000468332.6_1_10:79616610-79649212:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.8031616210938 2 560.804157 1119.59376 0.44372 0.00024884 -1.6176 -0.00090716 -1.1739 -0.00065832 560.803410594876 54.814 0.68415 58 57.595 58.279 3.1856 44 37 2 0 0 0 0.23311 1 12472 12472 18.135 3.5533 1 111060 + 526 22487 323 324 738 738 0.03874789522865285 AHIIKFKK 8 Unmodified _AHIIKFKK_ 0 0 0 L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|61|3|anti-sense L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|61|3|anti-sense L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 492.7042236328125 2 492.821287 983.628021 NaN NaN NaN NaN NaN NaN NaN 30.904 1 34.386 33.886 34.886 3.4821 0 0 0 0.40738 1 5160 5160 0.79363 0.10326 1 527 12910 324 325 739 739 0.13555237681748622 AHILAPIHARC 11 Unmodified _AHILAPIHARC_ 0 0 0 REV__MER6_dup680|chr14:49797796-49798626:+|1.887197265545522|0.3266534227305364|2.53|151.0|60|3|anti-sense REV__MER6_dup680|chr14:49797796-49798626:+|1.887197265545522|0.3266534227305364|2.53|151.0|60|3|anti-sense MSMS UPN47_class_I_Rep_2 3 601.33740234375 2 601.334767 1200.65498 NaN NaN NaN NaN NaN NaN NaN 44.325 1 47.68 47.18 48.18 3.3556 0 0 0 0.38417 1 9232 9232 1.3295 0.80477 1 + 528 31481 325 326 740 740 0.06267978230630433 AHIPPGPCMK 10 Unmodified _AHIPPGPCMK_ 0 0 0 ENSG00000162946.23,DISC1,chr1,+,I15.1,231855381,231866522|23|8.8|1|intron ENSG00000162946.23,DISC1,chr1,+,I15.1,231855381,231866522|23|8.8|1|intron ENSG00000162946.23,DISC1,chr1,+,I15.1,231855381,231866522|23|8.8|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 525.7645874023438 2 525.764797 1049.51504 0.34738 0.00018264 -1.4517 -0.00076325 -1.1043 -0.00058061 525.7640139145452 54.872 0.67222 58.058 57.783 58.456 3.1856 65 38 2 0 0 0 0.54466 1 12535 12535 6.2058 2.2614 1 102760 529 3974 326 327 741 741 -0.00773522098097601 AHIVTLKNGRV 11 Unmodified _AHIVTLKNGRV_ 0 0 0 nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN nc|ENSG00000088812|O75882-3|ATRN nc|ENSG00000088812|O75882-3|ATRN MSMS UPN46_class_I_Rep_3 1 604.3689575195312 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 107.76 1 107.76 107.26 108.26 0 0 0 0 0.3116 1 26287 26287 11.495 2.7493 1 530 1315 327 328 742 742 0.12459876308275852 AHKHRIVS 8 Unmodified _AHKHRIVS_ 0 0 0 REV__L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|148|2|anti-sense REV__L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|148|2|anti-sense MSMS UPN47_class_I_Rep_2 3 474.28216552734375 2 474.280318 946.546083 NaN NaN NaN NaN NaN NaN NaN 115.84 1 119.34 118.84 119.84 3.4965 0 0 0 0.40746 1 28259 28259 0.69038 0 1 + 531 28666 328 329 743 743 0.07067135322654394 AHKHVRSP 8 Unmodified _AHKHVRSP_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MSMS UPN46_class_I_Rep_3 1 466.27752685546875 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 107.93 1 107.93 107.43 108.43 0 0 0 0 0.39996 1 26334 26334 7.9102 1.187 1 532 7463 329 330 744 744 0.04674562288562356 AHKHVRSP 8 Unmodified _AHKHVRSP_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MSMS UPN47_class_I_Rep_3 4 466.2772521972656 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 107.76 1 111.3 110.8 111.8 3.5382 0 0 0 0.39996 1 26313 26313 7.9102 0 1 533 7463 329 330 745 745 0.04674562288562356 AHKKPILV 8 Unmodified _AHKKPILV_ 0 0 0 nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E MSMS UPN47_class_I_Rep_2 3 453.3003234863281 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 25.574 1 29.057 28.557 29.557 3.483 0 0 0 0.40738 1 3571 3571 0.79363 0.79363 1 534 4469 330 331 746 746 0.12971262273379125 AHKLAIDVV 9 Unmodified _AHKLAIDVV_ 0 0 0 L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|25|2|anti-sense L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|25|2|anti-sense L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|25|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.2925720214844 2 483.292559 964.570566 -0.022184 -1.0722E-05 -0.18654 -9.0154E-05 -0.20873 -0.00010088 483.29235219714735 45.051 0.60691 48.406 48.223 48.83 3.3556 54 35 2 0 0 0 0.46434 1 9417 9417 4.3292 2.2695 1 92509 535 9242 331 332 747 747 0.08686350685513844 AHKSITRKRR 10 Unmodified _AHKSITRKRR_ 0 0 0 REV__L1MCa_dup6363|chr15:82742048-82742976:+|1.2369374337579448|0.420126192346909|1.56|151.0|19|3|sense REV__L1MCa_dup6363|chr15:82742048-82742976:+|1.2369374337579448|0.420126192346909|1.56|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 626.8895874023438 2 626.889087 1251.76362 NaN NaN NaN NaN NaN NaN NaN 104.37 1 108.13 107.63 108.63 3.7627 0 0 0 0.53105 1 25638 25638 6.2058 1.3088 1 + 536 27221 332 333 748 748 0.14780905525230992 AHKSITRKRR 10 Unmodified _AHKSITRKRR_ 0 0 0 REV__L1MCa_dup6363|chr15:82742048-82742976:+|1.2369374337579448|0.420126192346909|1.56|151.0|19|3|sense REV__L1MCa_dup6363|chr15:82742048-82742976:+|1.2369374337579448|0.420126192346909|1.56|151.0|19|3|sense MSMS UPN48_class_I_Rep_2 6 626.8890991210938 2 626.889087 1251.76362 NaN NaN NaN NaN NaN NaN NaN 103.68 1 107.38 106.88 107.88 3.6991 0 0 0 0.53105 1 24539 24539 6.2058 0.9089 1 + 537 27221 332 333 749 749 0.14780905525230992 AHLAEITEAA 10 Unmodified _AHLAEITEAA_ 0 0 0 REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF MSMS UPN47_class_I_Rep_1 2 513.2689208984375 2 513.266739 1024.51892 NaN NaN NaN NaN NaN NaN NaN 79.727 1 83.192 82.692 83.692 3.465 0 0 0 0.53105 1 19875 19875 5.7319 0.50118 1 + 538 18183 333 334 750 750 0.007645622009476938 AHLAEITEAA 10 Unmodified _AHLAEITEAA_ 0 0 0 REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF MSMS UPN47_class_I_Rep_2 3 513.2686157226562 2 513.266739 1024.51892 NaN NaN NaN NaN NaN NaN NaN 79.501 1 82.856 82.356 83.356 3.3554 0 0 0 0.53105 1 19792 19792 13.042 2.2185 1 + 539 18183 333 334 751 751 0.007645622009476938 AHLAEITEAA 10 Unmodified _AHLAEITEAA_ 0 0 0 REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF MSMS UPN47_class_I_Rep_3 4 513.2680053710938 2 513.266739 1024.51892 NaN NaN NaN NaN NaN NaN NaN 79.62 1 82.915 82.415 83.415 3.295 0 0 0 0.53105 1 19910 19910 24.021 4.7636 1 + 540 18183 333 334 752 752 0.007645622009476938 AHLEEERD 8 Unmodified _AHLEEERD_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133392|P35749-4|MYH11 ENSG00000100345|ENST00000216181|MYH9 MSMS UPN47_class_I_Rep_1 2 499.305419921875 2 499.73052 997.446488 NaN NaN NaN NaN NaN NaN NaN 58.594 1 62.011 61.511 62.511 3.4171 0 0 0 0.40527 1 13542 13542 3.5965 1.2938 1 541 1497;2787;2801 334 335 753 753 -0.05233771872622128 AHLEEPPTPQS 11 Unmodified _AHLEEPPTPQS_ 0 0 0 REV__ENSG00000181433|ENST00000370709|SAGE1 REV__ENSG00000181433|ENST00000370709|SAGE1 MSMS UPN48_class_I_Rep_3 7 603.294921875 2 603.293485 1204.57242 NaN NaN NaN NaN NaN NaN NaN 54.135 1 57.705 57.205 58.205 3.5694 0 0 0 0.38417 1 11351 11351 2.086 0.24177 1 + 542 20734 335 336 754 754 -0.021686850871901697 AHLFSPLEYE 10 Unmodified _AHLFSPLEYE_ 0 0 0 MLT1H1_dup881|chr4:39965021-39965470:+|1.0829572964669|0.0032891541093734|8.36|151.0|1|1|sense MLT1H1_dup881|chr4:39965021-39965470:+|1.0829572964669|0.0032891541093734|8.36|151.0|1|1|sense MLT1H1_dup881|chr4:39965021-39965470:+|1.0829572964669|0.0032891541093734|8.36|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 603.30712890625 2 603.295496 1204.57644 NaN NaN NaN NaN NaN NaN NaN 54.135 1 57.717 57.217 58.217 3.5817 0 0 0 0.53105 1 11413 11413 1.4819 0 1 543 16443 336 337 755 755 -0.017665955934717203 AHLFSPLEYE 10 Unmodified _AHLFSPLEYE_ 0 0 0 MLT1H1_dup881|chr4:39965021-39965470:+|1.0829572964669|0.0032891541093734|8.36|151.0|1|1|sense MLT1H1_dup881|chr4:39965021-39965470:+|1.0829572964669|0.0032891541093734|8.36|151.0|1|1|sense MLT1H1_dup881|chr4:39965021-39965470:+|1.0829572964669|0.0032891541093734|8.36|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 602.8070678710938 2 603.295496 1204.57644 NaN NaN NaN NaN NaN NaN NaN 54.255 1 57.824 57.324 58.324 3.5694 0 0 0 0.53105 1 11388 11388 1.4819 0 1 544 16443 336 337 756 756 -0.017665955934717203 AHLKLIKAIY 10 Unmodified _AHLKLIKAIY_ 0 0 0 L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|98|3|sense L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|98|3|sense L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|98|3|sense MSMS UPN48_class_I_Rep_2 6 585.7928466796875 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 54.263 1 57.844 57.344 58.344 3.5817 0 0 0 0.53105 1 11452 11452 1.8442 1.2427 1 545 15017 337 338 757 757 0.15559734087514698 AHLLPRPPPHH 11 Unmodified _AHLLPRPPPHH_ 0 0 0 ENST00000597145.5_1_19:4685559-4714096:-|nuORF ENST00000597145.5_1_19:4685559-4714096:-|nuORF ENST00000597145.5_1_19:4685559-4714096:-|nuORF MSMS UPN47_class_I_Rep_2 3 636.358154296875 2 636.359631 1270.70471 NaN NaN NaN NaN NaN NaN NaN 66.565 1 69.823 69.323 70.323 3.2588 0 0 0 0.38417 1 15999 15999 2.9952 0 1 546 7647 338 339 758 758 0.08018429230946822 AHLLPRPPPHH 11 Unmodified _AHLLPRPPPHH_ 0 0 0 ENST00000597145.5_1_19:4685559-4714096:-|nuORF ENST00000597145.5_1_19:4685559-4714096:-|nuORF ENST00000597145.5_1_19:4685559-4714096:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 636.3587646484375 2 636.359631 1270.70471 0.44576 0.00028366 -1.2031 -0.0007656 -0.75734 -0.00048194 636.3588267546014 66.35 0.52049 69.535 69.253 69.774 3.1853 52 39 2 0 0 0 0.65271 1 15936 15936 2.9952 1.8019 1 97040 547 7647 338 339 759 759 0.08018429230946822 AHLPLWTHWG 10 Unmodified _AHLPLWTHWG_ 0 0 0 REV__nc|ENSG00000069812|Q9Y543-2|HES2 REV__nc|ENSG00000069812|Q9Y543-2|HES2 MULTI-SECPEP UPN48_class_I_Rep_1 5 406.8794860839844 3 406.545331 1216.61416 0.0053133 2.1601E-06 -1.2086 -0.00049134 -1.2033 -0.00048918 406.5448522470175 62.235 0.26841 65.697 65.579 65.848 3.4625 25 21 2 0 0 0 0.84575 1 13886 13886 0.69767 0.23933 1 118970 + 548 31939 339 340 760 760 0.014519601826350481 AHLPLWTHWG 10 Unmodified _AHLPLWTHWG_ 0 0 0 REV__nc|ENSG00000069812|Q9Y543-2|HES2 REV__nc|ENSG00000069812|Q9Y543-2|HES2 MULTI-MATCH UPN48_class_I_Rep_2 6 3 406.545331 1216.61416 0.13525 5.4983E-05 -1.2339 -0.00050163 -1.0986 -0.00044665 406.87925408557663 62.065 0.18083 65.538 65.385 65.566 3.4738 -0.079423 -2.1124E-05 NaN 0.69767 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 74260 + 549 31939 339 340 0.014519601826350481 AHLQQAFH 8 Unmodified _AHLQQAFH_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;ENST00000609762.1_1_7:138978594-138982579:+|nuORF ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MSMS UPN47_class_I_Rep_2 3 476.2294921875 2 476.243401 950.472249 NaN NaN NaN NaN NaN NaN NaN 28.232 1 31.731 31.231 32.231 3.4986 0 0 0 0.40604 1 4352 4352 2.5775 0.27475 1 550 3775 340 341 761 761 -0.004968328396785182 AHLSSRDSQSR 11 Unmodified _AHLSSRDSQSR_ 0 0 0 ENST00000556102.6_2_14:54885000-54886793:+|nuORF;nc|ENSG00000100526|Q16667-2|CDKN3;ENSG00000100526|ENST00000335183|CDKN3 ENST00000556102.6_2_14:54885000-54886793:+|nuORF ENST00000556102.6_2_14:54885000-54886793:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 622.3108520507812 2 622.310532 1242.60651 0.49091 0.0003055 -0.18225 -0.00011342 0.30866 0.00019208 622.3103603507742 60.141 0.96129 63.414 62.974 63.936 3.2731 147 65 3 0 0 0 0.62748 1 14093 14093 4.5289 0 1 298570 551 1512 341 342 762 762 -0.00508843875581988 AHLTHTALSR 10 Unmodified _AHLTHTALSR_ 0 0 0 REV__ENST00000525370.5_1_19:50310410-50314932:-|nuORF REV__ENST00000525370.5_1_19:50310410-50314932:-|nuORF MSMS UPN47_class_I_Rep_2 3 553.7969360351562 2 553.806897 1105.59924 NaN NaN NaN NaN NaN NaN NaN 61.86 1 65.119 64.619 65.619 3.2594 0 0 0 0.53105 1 14571 14571 4.5289 0.58447 1 + 552 17569 342 343 763 763 0.05066468314635131 AHLVYFFCF 9 Unmodified _AHLVYFFCF_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|38|1|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|38|1|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_3 7 573.777587890625 2 573.775688 1145.53682 NaN NaN NaN NaN NaN NaN NaN 75.74 1 79.316 78.816 79.816 3.5764 0 0 0 0.39326 1 17809 17809 2.3027 0.4585 1 553 13001 343 344 764 764 -0.030123940778821634 AHMHWTPKSC 10 Unmodified _AHMHWTPKSC_ 0 0 0 REV__L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|117|2|sense REV__L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|117|2|sense MSMS UPN48_class_I_Rep_2 6 599.287353515625 2 599.268235 1196.52192 NaN NaN NaN NaN NaN NaN NaN 30.543 1 34.178 33.678 34.678 3.6351 0 0 0 0.53105 1 4484 4484 2.7352 0 1 + 554 29928 344 345 765 765 -0.0684820921753726 AHMKLGLYNP 10 Unmodified _AHMKLGLYNP_ 0 0 0 REV__ENST00000496525.1_1_13:20244500-20245123:+|nuORF REV__ENST00000496525.1_1_13:20244500-20245123:+|nuORF MSMS UPN48_class_I_Rep_2 6 572.3017578125 2 572.302601 1142.59065 NaN NaN NaN NaN NaN NaN NaN 39.705 1 43.435 42.935 43.935 3.7297 0 0 0 0.53105 1 7072 7072 1.4819 0.15237 1 + 555 22662 345 346 766 766 0.02505778353815913 AHMTKIFMK 9 Unmodified _AHMTKIFMK_ 0 0 0 REV__MER11B_dup360|chr10:58255759-58256825:+|2.2343054575988672|0.0301010497936594|6.21|151.0|19|2|sense REV__MER11B_dup360|chr10:58255759-58256825:+|2.2343054575988672|0.0301010497936594|6.21|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.8134155273438 2 553.796097 1105.57764 0.39781 0.00022031 -0.849 -0.00047017 -0.45119 -0.00024987 553.7954294616032 57.077 0.38867 60.534 60.436 60.824 3.4572 45 36 2 0 0 0 0.41259 1 13083 13083 7.2892 0.56607 1 138270 + 556 31093 346 347 767 767 0.02907623970077111 AHMTKIFMK 9 Unmodified _AHMTKIFMK_ 0 0 0 REV__MER11B_dup360|chr10:58255759-58256825:+|2.2343054575988672|0.0301010497936594|6.21|151.0|19|2|sense REV__MER11B_dup360|chr10:58255759-58256825:+|2.2343054575988672|0.0301010497936594|6.21|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.7955932617188 2 553.796097 1105.57764 0.51509 0.00028526 -0.95597 -0.00052941 -0.44088 -0.00024416 553.7954262003069 57.481 0.46708 60.772 60.486 60.953 3.2912 72 38 2 0 0 0 0.41259 1 13200 13200 7.2892 0.56607 1 174120 + 557 31093 346 347 768 768 0.02907623970077111 AHMTKIFMK 9 Unmodified _AHMTKIFMK_ 0 0 0 REV__MER11B_dup360|chr10:58255759-58256825:+|2.2343054575988672|0.0301010497936594|6.21|151.0|19|2|sense REV__MER11B_dup360|chr10:58255759-58256825:+|2.2343054575988672|0.0301010497936594|6.21|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.8132934570312 2 553.796097 1105.57764 0.35775 0.00019812 -0.71476 -0.00039583 -0.35701 -0.00019771 553.7956021026342 57.69 0.49017 60.858 60.509 60.999 3.1681 60 40 2 0 0 0 0.41259 1 13287 13287 7.2892 0.56607 1 137820 + 558 31093 346 347 769 769 0.02907623970077111 AHNKFVELE 9 Unmodified _AHNKFVELE_ 0 0 0 REV__ENSG00000075223|ENST00000265361|SEMA3C REV__ENSG00000075223|ENST00000265361|SEMA3C MULTI-MSMS UPN47_class_I_Rep_2 3 543.7822265625 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.42249 1 9932 9932 6.7232 0 1 7409700 + 559 17851 347 348 770 770 0.011205549548776617 AHNKFVELE 9 Unmodified _AHNKFVELE_ 0 0 0 REV__ENSG00000075223|ENST00000265361|SEMA3C REV__ENSG00000075223|ENST00000265361|SEMA3C MULTI-MSMS UPN47_class_I_Rep_3 4 543.7823486328125 2 543.782556 1085.55056 0.21383 0.00011628 -0.0054587 -2.9684E-06 0.20837 0.00011331 543.7826467027404 45.035 2.5291 48.279 47.763 50.292 3.2441 412 158 3 0 0 0 0.42249 1 10002 10002 6.7232 0 1 8447000 + 560 17851 347 348 771 771 0.011205549548776617 AHNNQLFHL 9 Unmodified _AHNNQLFHL_ 0 0 0 L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|59|3|anti-sense L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|59|3|anti-sense L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|59|3|anti-sense MSMS UPN47_class_I_Rep_2 3 547.281005859375 2 547.280515 1092.54648 NaN NaN NaN NaN NaN NaN NaN 50.791 1 54.13 53.63 54.63 3.3386 0 0 0 0.39428 1 11195 11195 2.0598 0 1 561 11674 348 349 772 772 0.003905102518501735 AHNNQLFHL 9 Unmodified _AHNNQLFHL_ 0 0 0 L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|59|3|anti-sense L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|59|3|anti-sense L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|59|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.2818603515625 2 547.280515 1092.54648 0.51906 0.00028407 -0.42089 -0.00023035 0.098169 5.3726E-05 547.28025611672 50.87 0.31206 54.086 53.953 54.265 3.2163 20 13 2 0 0 0 0.48643 1 11296 11296 2.0598 0.40713 1 53908 562 11674 348 349 773 773 0.003905102518501735 AHNPKRHNSA 10 Unmodified _AHNPKRHNSA_ 0 0 0 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS UPN47_class_I_Rep_1 2 566.2932739257812 2 566.291945 1130.56934 0.24817 0.00014054 2.2744 0.001288 2.5226 0.0014285 566.2930204201713 50.626 0.49707 54.255 53.988 54.485 3.6285 33 21 2 0 0 0 0.56078 1 11135 11135 3.2813 0.54611 1 60249 563 5131 349 350 774 774 0.009275293693235653 AHNVFSEIVA 10 Unmodified _AHNVFSEIVA_ 0 0 0 REV__nc|ENSG00000167470|Q504T8|MIDN REV__nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS UPN47_class_I_Rep_2 3 543.782470703125 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.52083 1 9805 9805 9.3831 2.66 1 7409700 + 564 20219 350 351 775 775 0.01120554954900399 AHPGPASLLY 10 Unmodified _AHPGPASLLY_ 0 0 0 REV__ENSG00000213203|ENST00000307194|GIMAP1 REV__ENSG00000213203|ENST00000307194|GIMAP1 MULTI-SECPEP UPN48_class_I_Rep_1 5 513.8057250976562 2 513.274367 1024.53418 0.24694 0.00012675 0.18387 9.4376E-05 0.43081 0.00022112 513.2742742592211 88.071 0.42384 91.69 91.46 91.884 3.6187 64 42 2 0 0 0 0.84575 1 21117 21117 3.5965 0 1 133170 + 565 21243 351 352 776 776 0.022894737888236705 AHPNMKRGSQT 11 Unmodified _AHPNMKRGSQT_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 613.8069458007812 2 613.806571 1225.59859 0.42371 0.00026008 -0.53779 -0.0003301 -0.11408 -7.002E-05 613.8060568729467 63.088 0.87097 66.343 66.051 66.922 3.2558 110 61 3 0 0 0 0.66059 2 15054 15054;15066 2.2828 2.2828 1 216640 566 15425 352 353 777;778 777 -0.005186943967146362 AHPNMKRGSQT 11 Unmodified _AHPNMKRGSQT_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 613.8065185546875 2 613.806571 1225.59859 0.42347 0.00025993 -0.54258 -0.00033304 -0.11911 -7.311E-05 613.8061137048556 63.161 0.86245 66.331 65.976 66.838 3.1698 124 61 4 0 0 0 0.50573 2 14984 14984;15148 7.609 3.2797 1 245410 567 15425 352 353 779;780 779 -0.005186943967146362 AHPQGLLCNR 10 Unmodified _AHPQGLLCNR_ 0 0 0 ENST00000485781.5_1_2:63815746-63815932:+|nuORF ENST00000485781.5_1_2:63815746-63815932:+|nuORF ENST00000485781.5_1_2:63815746-63815932:+|nuORF MSMS UPN46_class_I_Rep_3 1 554.7861328125 2 554.78765 1107.56075 NaN NaN NaN NaN NaN NaN NaN 32.688 1 32.688 32.188 33.188 0 0 0 0 0.53105 1 5626 5626 13.906 0.39817 1 568 7034 353 354 781 781 0.011268394084709143 AHPWNQHIY 9 Unmodified _AHPWNQHIY_ 0 0 0 REV__L1ME3_dup9030|chr22:24385256-24386035:+|3.853592953072448|0.0493899509607981|6.29|151.0|31|3|sense REV__L1ME3_dup9030|chr22:24385256-24386035:+|3.853592953072448|0.0493899509607981|6.29|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.2796630859375 2 583.280515 1164.54648 0.10508 6.1293E-05 -0.81896 -0.00047769 -0.71388 -0.00041639 583.2800071061888 45.537 0.37433 49.237 48.971 49.345 3.6999 30 19 2 0 0 0 0.41259 1 9527 9527 7.2892 1.0834 1 66804 + 569 27975 354 355 782 782 -0.029214897481324442 AHQFHFYTL 9 Unmodified _AHQFHFYTL_ 0 0 0 L1MD_dup414|chr1:174376265-174377546:+|1.7862448429622846|0.0368434725027045|5.6|151.0|9|1|sense L1MD_dup414|chr1:174376265-174377546:+|1.7862448429622846|0.0368434725027045|5.6|151.0|9|1|sense L1MD_dup414|chr1:174376265-174377546:+|1.7862448429622846|0.0368434725027045|5.6|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.2872924804688 2 582.285266 1162.55598 0.41933 0.00024417 1.4952 0.00087063 1.9145 0.0011148 582.285934468252 49.712 0.91364 53.055 52.585 53.499 3.3431 88 56 2 0 0 0 0.42249 1 10937 10937 6.7232 0.51738 1 111610 570 11879 355 356 783 783 -0.01879721462614725 AHQTKETGLF 10 Unmodified _AHQTKETGLF_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|20|2|anti-sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|20|2|anti-sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.29345703125 2 566.293288 1130.57202 0.53916 0.00030533 -0.83296 -0.0004717 -0.29379 -0.00016637 566.2928427175877 51.133 0.60199 54.35 53.994 54.596 3.2163 43 27 2 0 0 0 0.54466 1 11299 11299 6.2058 1.8765 1 63787 571 15512 356 357 784 784 0.011959399835859585 AHRFGLCAL 9 Unmodified _AHRFGLCAL_ 0 0 0 REV__Tigger1_dup4680|chr6:15610285-15612432:+|1.0995328909396065|0.0171491727650627|6.0|151.0|120|2|anti-sense REV__Tigger1_dup4680|chr6:15610285-15612432:+|1.0995328909396065|0.0171491727650627|6.0|151.0|120|2|anti-sense MSMS UPN48_class_I_Rep_1 5 494.2650451660156 2 494.263279 986.512005 NaN NaN NaN NaN NaN NaN NaN 27.203 1 30.766 30.266 31.266 3.5629 0 0 0 0.39428 1 3467 3467 2.0598 0.40713 1 + 572 32323 357 358 785 785 0.018209708393897017 AHRLVLVF 8 Unmodified _AHRLVLVF_ 0 0 0 L1MD1_dup6373|chr20:3970015-3970763:+|2.133365787077294|0.014541270505381|7.2|151.0|27|1|anti-sense L1MD1_dup6373|chr20:3970015-3970763:+|2.133365787077294|0.014541270505381|7.2|151.0|27|1|anti-sense L1MD1_dup6373|chr20:3970015-3970763:+|2.133365787077294|0.014541270505381|7.2|151.0|27|1|anti-sense MSMS UPN46_class_I_Rep_3 1 477.7592468261719 2 477.797812 953.581071 NaN NaN NaN NaN NaN NaN NaN 28.421 1 28.421 27.921 28.921 0 0 0 0 0.40746 1 4360 4360 0.69038 0 1 573 11969 358 359 786 786 0.10242378130590168 AHRMDLMV 8 Unmodified _AHRMDLMV_ 0 0 0 Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|149|2|anti-sense Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|149|2|anti-sense Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|149|2|anti-sense MSMS UPN47_class_I_Rep_1 2 486.7423095703125 2 486.741322 971.468092 NaN NaN NaN NaN NaN NaN NaN 46.648 1 50.348 49.848 50.848 3.6999 0 0 0 0.40643 1 9914 9914 2.0598 0.21551 1 574 33309 359 360 787 787 -0.01878381649248695 AHSAGRKR 8 Unmodified _AHSAGRKR_ 0 0 0 REV__ENST00000433861.6_2_3:9775930-9776089:+|nuORF REV__ENST00000433861.6_2_3:9775930-9776089:+|nuORF MSMS UPN46_class_I_Rep_3 1 441.7680358886719 2 441.754467 881.494381 NaN NaN NaN NaN NaN NaN NaN 100.35 1 100.35 99.855 100.85 0 0 0 0 0.40625 1 24462 24462 2.3027 0.4585 1 + 575 22305 360 361 788 788 0.04889391628739759 AHSEFLQLAQ 10 Unmodified _AHSEFLQLAQ_ 0 0 0 REV__UROD|p.K297Rfs*3|1|0.04|ENSG00000126088|chr1:45014949-45014949|G/-|frameshift_variant REV__UROD|p.K297Rfs*3|1|0.04|ENSG00000126088|chr1:45014949-45014949|G/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 572.2935180664062 2 572.293288 1142.57202 -0.065175 -3.7299E-05 -0.13463 -7.7049E-05 -0.19981 -0.00011435 572.2931300032361 35.053 0.79919 38.739 38.474 39.273 3.6859 101 57 2 0 0 0 0.56078 1 6488 6488 3.2813 0.54611 1 199520 + 576 18856 361 362 789 789 0.006439399836153825 AHSKSRFSC 9 Unmodified _AHSKSRFSC_ 0 0 0 L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|113|3|anti-sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|113|3|anti-sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|113|3|anti-sense MSMS UPN48_class_I_Rep_1 5 511.74810791015625 2 511.74545 1021.47635 NaN NaN NaN NaN NaN NaN NaN 33.351 1 36.871 36.371 37.371 3.5201 0 0 0 0.39036 1 5191 5191 2.9952 0.41776 1 577 9252 362 363 790 790 -0.03353111408262066 AHTHKHGWS 9 Unmodified _AHTHKHGWS_ 0 0 0 REV__AluJb_dup37800|chr5:131279788-131280075:+|1.099397500570524|0.0056941378055387|7.59|151.0|19|2|anti-sense REV__AluJb_dup37800|chr5:131279788-131280075:+|1.099397500570524|0.0056941378055387|7.59|151.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.7564086914062 2 530.757207 1059.49986 0.028753 1.5261E-05 -0.57581 -0.00030561 -0.54706 -0.00029035 530.75699111343 43.883 1.1638 47.578 46.856 48.02 3.6951 127 68 3 0 0 0 0.36392 1 9100 9100 10.074 0.6908 1 151930 + 578 16940 363 364 791 791 -0.02750929579451622 AHTHKHGWS 9 Unmodified _AHTHKHGWS_ 0 0 0 REV__AluJb_dup37800|chr5:131279788-131280075:+|1.099397500570524|0.0056941378055387|7.59|151.0|19|2|anti-sense REV__AluJb_dup37800|chr5:131279788-131280075:+|1.099397500570524|0.0056941378055387|7.59|151.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.757568359375 2 530.757207 1059.49986 -0.024658 -1.3088E-05 -0.63313 -0.00033604 -0.65779 -0.00034912 530.7570675411894 44.203 1.2001 47.559 46.934 48.134 3.3556 134 73 3 0 0 0 0.43153 1 9130 9130 6.2058 0.47393 1 178910 + 579 16940 363 364 792 792 -0.02750929579451622 AHTNSPYPLY 10 Unmodified _AHTNSPYPLY_ 0 0 0 REV__HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|45|2|anti-sense REV__HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.7789916992188 2 581.780013 1161.54547 -0.038669 -2.2497E-05 0.18105 0.00010533 0.14238 8.2833E-05 581.7800548489878 38.555 2.2626 42.22 41.78 44.043 3.6652 361 161 4 0 0 0 0.52083 1 7878 7878 9.3831 1.473 1 896330 + 580 23431 364 365 793 793 -0.028837489077204737 AHTNSPYPLY 10 Unmodified _AHTNSPYPLY_ 0 0 0 REV__HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|45|2|anti-sense REV__HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.7799072265625 2 581.780013 1161.54547 0.045194 2.6293E-05 0.17308 0.0001007 0.21827 0.00012699 581.7800540568915 38.922 2.2633 42.301 41.894 44.157 3.3785 333 147 3 0 0 0 0.55148 1 8094 8094 5.2969 0.96765 1 703400 + 581 23431 364 365 794 794 -0.028837489077204737 AHVFVEEL 8 Unmodified _AHVFVEEL_ 0 0 0 REV__L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|3|1|sense REV__L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.74945068359375 2 472.247818 942.481082 0.12334 5.8248E-05 0.044691 2.1105E-05 0.16803 7.9354E-05 472.24768097471156 42.891 0.42165 46.532 46.274 46.696 3.6415 44 33 2 0 0 0 0.82752 1 7932 7932 5.2307 0.47466 1 73131 + 582 25879 365 366 795 795 0.007540960061305668 AHVIALWPL 9 Unmodified _AHVIALWPL_ 0 0 0 REV__MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|3|1|sense REV__MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 510.3035888671875 2 510.30547 1018.59639 0.2865 0.0001462 -1.3942 -0.00071146 -1.1077 -0.00056526 510.3031237596549 110.96 0.13597 114.62 114.6 114.74 3.6654 26 16 3 0 0 0 0.12422 1 26349 26349 2.3027 1.8444 1 197300 + 583 31561 366 367 796 796 0.08783244927803935 AHVQHQSCMT 10 Unmodified _AHVQHQSCMT_ 0 0 0 REV__nc|ENSG00000113595|P36406-3|TRIM23 REV__nc|ENSG00000113595|P36406-3|TRIM23 MSMS UPN47_class_I_Rep_1 2 571.2451171875 2 571.2475 1140.48045 NaN NaN NaN NaN NaN NaN NaN 53.224 1 56.752 56.252 57.252 3.5278 0 0 0 0.53105 1 11907 11907 5.7319 2.4505 1 + 584 18511 367 368 797 797 -0.08417389976875711 AHVQKYRVY 9 Unmodified _AHVQKYRVY_ 0 0 0 REV__ENSG00000156171|ENST00000484310|DRAM2 REV__ENSG00000156171|ENST00000484310|DRAM2 MSMS UPN47_class_I_Rep_2 3 582.3193359375 2 582.31964 1162.62473 NaN NaN NaN NaN NaN NaN NaN 62.221 1 65.481 64.981 65.981 3.2594 0 0 0 0.28335 1 14679 14679 11.64 0.81637 1 + 585 19784 368 369 798 798 0.04991942837091301 AHVWLCLF 8 Unmodified _AHVWLCLF_ 0 0 0 LTR62_dup151|chrX:2343354-2344130:+|1.474534717375477|0.0099033460075254|7.22|151.0|45|3|anti-sense LTR62_dup151|chrX:2343354-2344130:+|1.474534717375477|0.0099033460075254|7.22|151.0|45|3|anti-sense LTR62_dup151|chrX:2343354-2344130:+|1.474534717375477|0.0099033460075254|7.22|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.7563781738281 2 494.757298 987.500044 NaN NaN NaN NaN NaN NaN NaN 26.225 1 29.992 29.492 30.492 3.7663 0 0 0 0.40738 1 3293 3293 0.79363 0 1 586 15691 369 370 799 799 0.005793540961803956 AHWLIPFL 8 Unmodified _AHWLIPFL_ 0 0 0 REV__HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|107|1|anti-sense REV__HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|107|1|anti-sense MSMS UPN48_class_I_Rep_1 5 498.7859191894531 2 498.786913 995.559273 NaN NaN NaN NaN NaN NaN NaN 38.35 1 41.855 41.355 42.355 3.5052 0 0 0 0.40581 1 6633 6633 2.8892 1.045 1 + 587 23862 370 371 800 800 0.06131573382037914 AHWVRICH 8 Unmodified _AHWVRICH_ 0 0 0 ENST00000565934.1_1_16:8943287-8943768:+|nuORF ENST00000565934.1_1_16:8943287-8943768:+|nuORF ENST00000565934.1_1_16:8943287-8943768:+|nuORF MSMS UPN47_class_I_Rep_1 2 511.31103515625 2 511.261071 1020.50759 NaN NaN NaN NaN NaN NaN NaN 112.79 1 116.36 115.86 116.86 3.572 0 0 0 0.40738 1 27814 27814 0.79363 0 1 588 7490 371 372 801 801 -0.001844935835151773 AHWVVSQPP 9 Unmodified _AHWVVSQPP_ 0 0 0 nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF nc|ENSG00000105576|O14787-2|TNPO2;nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS UPN48_class_I_Rep_1 5 510.7669677734375 2 510.766709 1019.51886 NaN NaN NaN NaN NaN NaN NaN 43.393 1 46.904 46.404 47.404 3.5103 0 0 0 0.39428 1 8140 8140 2.0598 0.57785 1 589 1745;1239 372 373 802 802 0.00988606991609231 AHWWEWHR 8 Unmodified _AHWWEWHR_ 0 0 0 REV__AluJo_dup48479|chr11:117009264-117009576:+|1.009167804325468|0.004765797718859|7.73|151.0|11|3|sense REV__AluJo_dup48479|chr11:117009264-117009576:+|1.009167804325468|0.004765797718859|7.73|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 604.28076171875 2 604.280849 1206.54715 NaN NaN NaN NaN NaN NaN NaN 29.712 1 33.441 32.941 33.941 3.7286 0 0 0 0.40798 1 4199 4199 0 0 1 + 590 17000 373 374 803 803 -0.04786650308460594 AHYDVEDWK 9 Unmodified _AHYDVEDWK_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MULTI-MSMS UPN47_class_I_Rep_1 2 581.7618408203125 2 581.76182 1161.50909 0.28394 0.00016518 0.22604 0.0001315 0.50998 0.00029669 581.7618303184215 51.963 0.46123 55.556 55.31 55.771 3.5932 42 31 2 0 0 0 0.47763 1 11525 11525 2.9952 1.3426 1 72471 591 2410 374 375 804 804 -0.06520625804432711 AHYDVEDWK 9 Unmodified _AHYDVEDWK_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MSMS UPN47_class_I_Rep_2 3 581.7621459960938 2 581.76182 1161.50909 NaN NaN NaN NaN NaN NaN NaN 52.118 1 55.452 54.952 55.952 3.3332 0 0 0 0.39036 1 11603 11603 2.9952 0.93549 1 592 2410 374 375 805 805 -0.06520625804432711 AHYQLHIRTS 10 Unmodified _AHYQLHIRTS_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS UPN48_class_I_Rep_1 5 613.3248291015625 2 613.325454 1224.63635 0.49559 0.00030396 -1.7656 -0.0010829 -1.27 -0.00077894 613.324354903487 67.118 0.41685 70.569 70.288 70.704 3.4516 41 25 2 0 0 0 0.53414 1 15328 15328 7.609 0.50723 1 127700 593 1282 375 376 806 806 0.03302139860420539 AIAEQALQL 9 Unmodified _AIAEQALQL_ 0 0 0 REV__ENSG00000150456|ENST00000382758|EEF1AKMT1 REV__ENSG00000150456|ENST00000382758|EEF1AKMT1 MULTI-MSMS UPN47_class_I_Rep_1 2 478.7740173339844 2 478.7742 955.533846 0.080058 3.833E-05 -0.37547 -0.00017976 -0.29541 -0.00014143 478.77398044945846 67.286 0.40579 70.647 70.363 70.769 3.3611 36 32 2 0 0 0 0.15547 1 16117 16117 24.991 3.454 1 71265 + 594 19632 376 377 807 807 0.054300540689382615 AIAEQALQL 9 Unmodified _AIAEQALQL_ 0 0 0 REV__ENSG00000150456|ENST00000382758|EEF1AKMT1 REV__ENSG00000150456|ENST00000382758|EEF1AKMT1 MSMS UPN47_class_I_Rep_2 3 478.77532958984375 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.502 1 70.765 70.265 71.265 3.2636 0 0 0 0.15288 1 16284 16284 19.362 2.249 1 + 595 19632 376 377 808 808 0.054300540689382615 AIAPPPRPPKP 11 Unmodified _AIAPPPRPPKP_ 0 0 0 nc|ENSG00000033327|Q9UQC2-2|GAB2;ENSG00000033327|ENST00000361507|GAB2 nc|ENSG00000033327|Q9UQC2-2|GAB2 nc|ENSG00000033327|Q9UQC2-2|GAB2 MULTI-MSMS UPN47_class_I_Rep_2 3 570.848388671875 2 570.848033 1139.68151 0.63496 0.00036246 0.20965 0.00011968 0.84461 0.00048214 570.8480628567963 108.69 0.61792 112.22 112.08 112.7 3.5333 256 71 4 0 0 0 0.31897 1 26411 26411 13.906 13.906 1 118880000 596 841 377 378 809 809 0.11725990393597385 AIAYLHFIT 9 Unmodified _AIAYLHFIT_ 0 0 0 REV__L1MB8_dup15755|chr20:35024139-35024541:-|1.010147406057331|0.1743874287496864|2.53|150.0|19|1|anti-sense REV__L1MB8_dup15755|chr20:35024139-35024541:-|1.010147406057331|0.1743874287496864|2.53|150.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 524.79296875 2 524.794935 1047.57532 NaN NaN NaN NaN NaN NaN NaN 66.335 1 69.843 69.343 70.343 3.5077 0 0 0 0.26661 1 15058 15058 12.532 0 1 + 597 26384 378 379 810 810 0.05343234828274035 AIAYLHFIT 9 Unmodified _AIAYLHFIT_ 0 0 0 REV__L1MB8_dup15755|chr20:35024139-35024541:-|1.010147406057331|0.1743874287496864|2.53|150.0|19|1|anti-sense REV__L1MB8_dup15755|chr20:35024139-35024541:-|1.010147406057331|0.1743874287496864|2.53|150.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 524.79296875 2 524.794935 1047.57532 NaN NaN NaN NaN NaN NaN NaN 66.385 1 69.893 69.393 70.393 3.5077 0 0 0 0.26661 1 15073 15073 12.532 0 1 + 598 26384 378 379 811 811 0.05343234828274035 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 MULTI-MSMS UPN47_class_I_Rep_1 2 547.27978515625 2 547.279846 1092.54514 0.32998 0.00018059 -0.11678 -6.3914E-05 0.2132 0.00011668 547.279694361726 51.851 0.75996 55.444 55.047 55.807 3.5932 123 48 3 0 0 0 0.006828 5 11450 11407;11450;11492;11531;11571 72.968 42.331 1 617580 599 1464 379 380 812;813;814;815;816 813 0.002568313724395921 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 MULTI-MSMS UPN47_class_I_Rep_2 3 547.2800903320312 2 547.279846 1092.54514 0.49272 0.00026966 -0.31648 -0.0001732 0.17624 9.6454E-05 547.2796219540144 52.118 0.78666 55.451 55.051 55.837 3.3332 142 55 4 0 0 0 0.006828 4 11606 11512;11562;11606;11647 72.968 42.331 1 680860 600 1464 379 380 817;818;819;820 819 0.002568313724395921 AIDEDVLRY 9 Unmodified _AIDEDVLRY_ 0 0 0 nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 MULTI-MSMS UPN47_class_I_Rep_3 4 547.2799072265625 2 547.279846 1092.54514 0.50577 0.0002768 -0.40979 -0.00022427 0.095977 5.2526E-05 547.2795466685923 52.245 0.83949 55.45 55.072 55.911 3.2055 150 66 4 0 0 0 0.0051925 5 11712 11624;11665;11712;11751;11778 92.653 60.348 1 605480 601 1464 379 380 821;822;823;824;825 823 0.002568313724395921 AIDERIGKGF 10 Unmodified _AIDERIGKGF_ 0 0 0 REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11 REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11 MSMS UPN47_class_I_Rep_2 3 553.3023681640625 2 553.303655 1104.59276 NaN NaN NaN NaN NaN NaN NaN 24.677 1 28.16 27.66 28.66 3.483 0 0 0 0.53105 1 3310 3310 1.6526 0.85899 1 + 602 17995 380 381 826 826 0.044645303632933064 AIDNPLHY 8 Unmodified _AIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN47_class_I_Rep_1 2 471.7376708984375 2 471.737617 941.460681 -0.17445 -8.2295E-05 -0.19204 -9.0592E-05 -0.36649 -0.00017289 471.7375092769376 45.205 0.66079 48.905 48.569 49.229 3.6999 51 38 2 0 0 0 0.82752 2 9447 9447;9490 48.346 8.3885 1 117080 603 2493 381 382 827;828 827 -0.012390746536880215 AIDNPLHY 8 Unmodified _AIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN47_class_I_Rep_2 3 471.7374572753906 2 471.737617 941.460681 -0.13346 -6.2958E-05 -0.32534 -0.00015347 -0.4588 -0.00021643 471.7374384751515 45.521 0.67739 48.875 48.53 49.207 3.3534 71 42 2 0 0 0 0.82752 1 9564 9564 34.102 7.2188 1 134230 604 2493 381 382 829 829 -0.012390746536880215 AIDNPLHY 8 Unmodified _AIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN47_class_I_Rep_3 4 471.7375183105469 2 471.737617 941.460681 -0.19764 -9.3236E-05 -0.08232 -3.8833E-05 -0.27996 -0.00013207 471.7375388441625 45.585 0.67206 48.829 48.545 49.217 3.2441 62 41 2 0 0 0 0.82752 2 9640 9640;9700 23.148 5.0134 1 102880 605 2493 381 382 830;831 830 -0.012390746536880215 AIDQLHLEY 9 Unmodified _AIDQLHLEY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS UPN47_class_I_Rep_1 2 551.2825927734375 2 551.282389 1100.55022 0.37394 0.00020614 0.029449 1.6235E-05 0.40339 0.00022238 551.2823760681372 55.162 1.3443 58.642 58.235 59.58 3.4798 239 83 4 0 0 0 0.0050147 6 12582 12418;12458;12501;12540;12582;12620 140.63 93.039 1 2395200 606 2657 382 383 832;833;834;835;836;837 836 0.003971352350617963 AIDQLHLEY 9 Unmodified _AIDQLHLEY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS UPN47_class_I_Rep_2 3 551.2826538085938 2 551.282389 1100.55022 0.50681 0.0002794 -0.1101 -6.0697E-05 0.39671 0.0002187 551.2822935040494 55.492 1.2696 58.802 58.339 59.609 3.3102 219 75 4 0 0 0 0.0057802 7 12604 12522;12560;12604;12646;12687;12728;12768 128.93 86.838 1 3048700 607 2657 382 383 838;839;840;841;842;843;844 840 0.003971352350617963 AIDQLHLEY 9 Unmodified _AIDQLHLEY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS UPN47_class_I_Rep_3 4 551.2825317382812 2 551.282389 1100.55022 0.4122 0.00022724 -0.056307 -3.1041E-05 0.35589 0.0001962 551.2823213958083 55.635 1.3554 58.812 58.33 59.686 3.1779 264 87 4 0 0 0 0.0057802 8 12698 12618;12660;12698;12739;12783;12828;12869;12882 128.93 88.693 1 2752000 608 2657 382 383 845;846;847;848;849;850;851;852 847 0.003971352350617963 AIDVLGRRS 9 Unmodified _AIDVLGRRS_ 0 0 0 REV__ENSG00000184350|ENST00000389832|MRGPRE REV__ENSG00000184350|ENST00000389832|MRGPRE MSMS UPN47_class_I_Rep_3 4 493.79827880859375 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 55.977 1 59.155 58.655 59.655 3.1779 0 0 0 0.39036 1 12834 12834 2.9952 0.93549 1 + 609 20817 383 384 853 853 0.07351680911665426 AIEMYIEIV 9 Unmodified _AIEMYIEIV_ 0 0 0 nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 nc|ENSG00000133863|Q9BXT5|TEX15 MSMS UPN48_class_I_Rep_3 7 540.7719116210938 2 540.785918 1079.55728 NaN NaN NaN NaN NaN NaN NaN 77.119 1 80.721 80.221 81.221 3.6016 0 0 0 0.381 1 18198 18198 5.2307 0 1 610 2819 384 385 854 854 0.020687317912461367 AIENQRYM 8 Unmodified _AIENQRYM_ 0 0 0 REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3 REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3 MULTI-MSMS UPN47_class_I_Rep_3 4 512.748046875 2 512.747659 1023.48076 0.28726 0.00014729 0.57756 0.00029614 0.86482 0.00044343 512.747855059191 75.38 0.65306 78.627 78.333 78.986 3.2464 102 59 2 0 0 0 0.82752 1 18748 18748 2.5775 0 1 184570 + 611 17809 385 386 855 855 -0.030036469853598646 AIFFNVKN 8 Unmodified _AIFFNVKN_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|6|1|sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|6|1|sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 476.7767028808594 2 476.766178 951.517802 NaN NaN NaN NaN NaN NaN NaN 63.019 1 66.275 65.775 66.775 3.2558 0 0 0 0.40364 1 14923 14923 5.7604 0 1 612 7824 386 387 856 856 0.04010392622706149 AIFILYYVREF 11 Unmodified _AIFILYYVREF_ 0 0 0 nc|ENSG00000129810|Q5FBB7-7|SGO1;nc|ENSG00000129810|Q5FBB7-3|SGO1;nc|ENSG00000129810|Q5FBB7-2|SGO1;nc|ENSG00000129810|Q5FBB7|SGO1 nc|ENSG00000129810|Q5FBB7-7|SGO1 nc|ENSG00000129810|Q5FBB7-7|SGO1 MULTI-SECPEP UPN48_class_I_Rep_1 5 478.2650451660156 3 478.599101 1432.77547 0.13425 6.4251E-05 0.026922 1.2885E-05 0.16117 7.7136E-05 478.5991842055628 40.517 0.12066 44.022 43.93 44.05 3.5048 14 10 2 0 0 0 22.551 1 7260 7260 0.50596 0.051438 1 87379 613 16680 387 388 857 857 0.07639664705197902 AIFNGHQN 8 Unmodified _AIFNGHQN_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MSMS UPN46_class_I_Rep_3 1 450.72003173828125 2 450.719759 899.424964 NaN NaN NaN NaN NaN NaN NaN 98.584 1 98.584 98.084 99.084 0 0 0 0 0.40738 1 24005 24005 0.79363 0 1 614 3302 388 389 858 858 -0.028771121106615283 AIFPSPMMY 9 2 Oxidation (M) _AIFPSPM(Oxidation (M))M(Oxidation (M))Y_ AIFPSPM(1)M(1)Y AIFPSPM(67)M(67)Y 0 0 2 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 MULTI-MSMS UPN46_class_I_Rep_3 1 544.7432250976562 2 544.743196 1087.47184 0.32399 0.00017649 0.91839 0.00050029 1.2424 0.00067678 544.7432178418092 66.651 0.95323 66.651 66.405 67.358 0 154 99 3 0 0 0 0.013968 2 15176 15176;15209 67.344 54.812 1 143410 615 3117 389 390 859;860 859 97;98 -0.06839756666045105 AIGVSATVLL 10 Unmodified _AIGVSATVLL_ 0 0 0 REV__L1ME4c_dup4855|chr9:125332673-125333080:+|1.4802048741954654|0.1796650731960185|3.04|151.0|15|3|sense REV__L1ME4c_dup4855|chr9:125332673-125333080:+|1.4802048741954654|0.1796650731960185|3.04|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.29461669921875 2 472.294768 942.574983 0.14527 6.8609E-05 -0.19764 -9.3342E-05 -0.052368 -2.4733E-05 472.294552029013 51.402 1.0795 54.741 54.316 55.396 3.3386 151 54 4 0 0 0 0.14253 3 11398 11353;11398;11441 85.272 5.6757 1 882990 + 616 28316 390 391 861;862;863 862 0.10139815108414041 AIGVSATVLL 10 Unmodified _AIGVSATVLL_ 0 0 0 REV__L1ME4c_dup4855|chr9:125332673-125333080:+|1.4802048741954654|0.1796650731960185|3.04|151.0|15|3|sense REV__L1ME4c_dup4855|chr9:125332673-125333080:+|1.4802048741954654|0.1796650731960185|3.04|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2945556640625 2 472.294768 942.574983 0.092696 4.378E-05 -0.18386 -8.6836E-05 -0.091163 -4.3056E-05 472.29458564323977 51.563 1.173 54.779 54.352 55.525 3.2163 143 64 3 0 0 0 0.12308 6 11533 11408;11447;11493;11533;11577;11602 74.929 9.1245 1 801570 + 617 28316 390 391 864;865;866;867;868;869 867 0.10139815108414041 AIHLGVEVL 9 Unmodified _AIHLGVEVL_ 0 0 0 L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 475.78704833984375 2 475.78711 949.559667 NaN NaN NaN NaN NaN NaN NaN 79.737 1 83.202 82.702 83.702 3.465 0 0 0 0.38639 1 19878 19878 3.9444 1.6417 1 618 10976 391 392 870 870 0.08286948311229025 AIHLGVEVL 9 Unmodified _AIHLGVEVL_ 0 0 0 L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 475.786865234375 2 475.78711 949.559667 NaN NaN NaN NaN NaN NaN NaN 79.721 1 83.077 82.577 83.577 3.3554 0 0 0 0.37476 1 19855 19855 6.7232 2.3939 1 619 10976 391 392 871 871 0.08286948311229025 AIHLGVEVL 9 Unmodified _AIHLGVEVL_ 0 0 0 L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 475.7872314453125 2 475.78711 949.559667 0.063154 3.0048E-05 0.11012 5.2395E-05 0.17328 8.2443E-05 475.78707249551616 79.425 0.9068 82.72 82.309 83.216 3.295 176 85 3 0 0 0 0.13631 4 19830 19790;19830;19870;19907 26.884 8.4331 1 324170 620 10976 391 392 872;873;874;875 873 0.08286948311229025 AIHLGVEVL 9 Unmodified _AIHLGVEVL_ 0 0 0 L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 475.78711 949.559667 0.14542 6.919E-05 -0.18479 -8.792E-05 -0.039365 -1.8729E-05 475.78696237746044 79.128 0.48064 82.574 82.344 82.824 3.4456 -0.11199 -0.00018931 NaN 26.884 62 40 2 NaN NaN NaN NaN 0 NaN NaN 0 1140700 621 10976 391 392 0.08286948311229025 AIHMQKKMK 9 Unmodified _AIHMQKKMK_ 0 0 0 L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|40|3|sense L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|40|3|sense L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.8135375976562 2 557.814822 1113.61509 0.47307 0.00026388 -1.0873 -0.00060653 -0.61426 -0.00034264 557.81415382561 90.091 0.31152 93.717 93.55 93.862 3.6255 45 38 2 0 0 0 0.48643 1 21660 21660 2.0598 0.21551 1 86105 622 14116 392 393 876 876 0.06282715235693104 AIIERVRLPV 10 Unmodified _AIIERVRLPV_ 0 0 0 nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 MSMS UPN47_class_I_Rep_2 3 583.3770141601562 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 41.561 1 44.926 44.426 45.426 3.3655 0 0 0 0.53105 1 8386 8386 1.1933 0.50296 1 623 3779 393 394 877 877 0.1584994845638903 AIIERVRLPV 10 Unmodified _AIIERVRLPV_ 0 0 0 nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 MSMS UPN47_class_I_Rep_3 4 583.3771362304688 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 43.272 1 46.513 46.013 47.013 3.2419 0 0 0 0.53105 1 8963 8963 1.1933 0.59184 1 624 3779 393 394 878 878 0.1584994845638903 AIIERVRLPV 10 Unmodified _AIIERVRLPV_ 0 0 0 nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 MSMS UPN47_class_I_Rep_3 4 583.3770141601562 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 43.791 1 47.033 46.533 47.533 3.2419 0 0 0 0.53105 1 9121 9121 1.1933 0.59184 1 625 3779 393 394 879 879 0.1584994845638903 AIIERVRLPV 10 Unmodified _AIIERVRLPV_ 0 0 0 nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 nc|ENSG00000157833|Q75VX8-3|GAREM2 MSMS UPN48_class_I_Rep_3 7 583.376953125 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 42.348 1 45.99 45.49 46.49 3.6415 0 0 0 0.53105 1 7750 7750 1.1933 0.59184 1 626 3779 393 394 880 880 0.1584994845638903 AIIFKKNQG 9 Unmodified _AIIFKKNQG_ 0 0 0 REV__nc|ENSG00000184611|Q9NS40-2|KCNH7 REV__nc|ENSG00000184611|Q9NS40-2|KCNH7 MSMS UPN47_class_I_Rep_1 2 509.8043518066406 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 76.494 1 79.909 79.409 80.409 3.4149 0 0 0 0.39518 1 18933 18933 1.8442 0.19162 1 + 627 20823 394 395 881 881 0.08902039576844345 AIIIEARPF 9 Unmodified _AIIIEARPF_ 0 0 0 Tigger1_dup9435|chr13:21437990-21439145:+|4.952046014768474|0.0460245562216282|6.75|151.0|10|1|sense Tigger1_dup9435|chr13:21437990-21439145:+|4.952046014768474|0.0460245562216282|6.75|151.0|10|1|sense Tigger1_dup9435|chr13:21437990-21439145:+|4.952046014768474|0.0460245562216282|6.75|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 515.28955078125 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 44.7 1 44.7 44.2 45.2 0 0 0 0 0.38784 1 9025 9025 3.5965 0.70727 1 628 33210 395 396 882 882 0.08870923719587154 AIIKTHRNH 9 Unmodified _AIIKTHRNH_ 0 0 0 REV__L1MA9_dup8628|chr9:40965381-40966742:-|1.955140887323713|0.1279977796977875|3.93|151.0|41|3|sense REV__L1MA9_dup8628|chr9:40965381-40966742:-|1.955140887323713|0.1279977796977875|3.93|151.0|41|3|sense MSMS UPN48_class_I_Rep_1 5 545.317138671875 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 70.575 1 74.034 73.534 74.534 3.4598 0 0 0 0.39518 1 16456 16456 1.8442 0 1 + 629 25646 396 397 883 883 0.07954478414171717 AIILKTIISLE 11 Unmodified _AIILKTIISLE_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|177|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|177|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|177|3|sense MSMS UPN47_class_I_Rep_3 4 405.262939453125 3 405.263718 1212.76933 NaN NaN NaN NaN NaN NaN NaN 97.881 1 101.3 100.8 101.8 3.4216 0 0 0 0.38417 1 24249 24249 0.45452 0.1855 1 630 10391 397 398 884 884 0.17145146473717432 AIILQFNNK 9 Unmodified _AIILQFNNK_ 0 0 0 L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|108|3|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|108|3|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|108|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.8110961914062 2 530.811116 1059.60768 0.34372 0.00018245 0.45436 0.00024118 0.79808 0.00042363 530.8113021793388 63.298 0.32685 66.657 66.574 66.901 3.3595 33 27 2 0 0 0 0.41259 1 15025 15025 7.2892 0.56607 1 122630 631 9512 398 399 885 885 0.0802602223127451 AIIPPCFSSL 10 Unmodified _AIIPPCFSSL_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|253|1|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|253|1|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|253|1|anti-sense MSMS UPN47_class_I_Rep_2 3 524.279052734375 2 524.280803 1046.54705 NaN NaN NaN NaN NaN NaN NaN 47.419 1 50.768 50.268 51.268 3.3492 0 0 0 0.53105 1 10177 10177 6.2058 0.9089 1 632 13645 399 400 886 886 0.025641688567020537 AIISELVSI 9 Unmodified _AIISELVSI_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS UPN47_class_I_Rep_3 4 472.7868347167969 2 472.786776 943.558998 0.034245 1.6191E-05 -0.0083005 -3.9244E-06 0.025945 1.2266E-05 472.7867593775263 81.408 0.63686 84.731 84.543 85.18 3.3231 112 67 2 0 0 0 0.047711 3 20354 20354;20389;20432 49.933 11.959 1 191930 633 1934 400 401 887;888;889 887 0.08496108871520391 AIKHWVLF 8 Unmodified _AIKHWVLF_ 0 0 0 L1MA3_dup536|chr1:212772704-212774392:+|1.460981434270849|0.0148727166625719|6.62|150.0|62|1|anti-sense L1MA3_dup536|chr1:212772704-212774392:+|1.460981434270849|0.0148727166625719|6.62|150.0|62|1|anti-sense L1MA3_dup536|chr1:212772704-212774392:+|1.460981434270849|0.0148727166625719|6.62|150.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 507.29254150390625 2 507.300188 1012.58582 NaN NaN NaN NaN NaN NaN NaN 61.609 1 64.869 64.369 65.369 3.2594 0 0 0 0.40364 1 14495 14495 5.7604 0.52976 1 634 9570 401 402 890 890 0.08003262273371092 AIKKNRFHI 9 Unmodified _AIKKNRFHI_ 0 0 0 ENST00000274030.10_1_4:120160492-120160642:+|nuORF ENST00000274030.10_1_4:120160492-120160642:+|nuORF ENST00000274030.10_1_4:120160492-120160642:+|nuORF MSMS UPN48_class_I_Rep_3 7 563.845703125 2 563.845825 1125.6771 NaN NaN NaN NaN NaN NaN NaN 66.059 1 69.567 69.067 70.067 3.5077 0 0 0 0.39518 1 14976 14976 1.8442 0 1 635 6015 402 403 891 891 0.11928525970688497 AIKNDLINL 9 Unmodified _AIKNDLINL_ 0 0 0 L1MB3_dup2398|chr2:161187456-161188748:+|3.711677656924776|0.1201259642982483|4.95|151.0|3|1|sense L1MB3_dup2398|chr2:161187456-161188748:+|3.711677656924776|0.1201259642982483|4.95|151.0|3|1|sense L1MB3_dup2398|chr2:161187456-161188748:+|3.711677656924776|0.1201259642982483|4.95|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 507.02392578125 2 507.303124 1012.5917 0.22897 0.00011616 0.32366 0.0001642 0.55263 0.00028035 507.3031729087032 56.501 0.17533 56.501 56.464 56.639 0 24 20 2 0 0 0 0.11734 1 12318 12318 7.609 0 1 154890 636 10403 403 404 892 892 0.08590315994376851 AILAIPKKF 9 Unmodified _AILAIPKKF_ 0 0 0 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 MSMS UPN48_class_I_Rep_3 7 500.8295593261719 2 500.83132 999.648088 NaN NaN NaN NaN NaN NaN NaN 73.813 1 77.363 76.863 77.863 3.5505 0 0 0 0.40038 1 17284 17284 0.6015 0.6015 1 + 637 19948 404 405 893 893 0.14824988621694501 AILARTEEI 9 Unmodified _AILARTEEI_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS UPN47_class_I_Rep_1 2 508.3022766113281 2 508.292756 1014.57096 0.12776 6.4941E-05 -0.29218 -0.00014851 -0.16442 -8.3574E-05 508.29250007860776 51.729 0.61109 55.323 55.028 55.639 3.5932 54 34 2 0 0 0 0.33908 1 11406 11406 11.495 2.1116 1 106200 + 638 18881 405 406 894 894 0.06425725614712974 AILEKVFTA 9 Unmodified _AILEKVFTA_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS UPN47_class_I_Rep_1 2 496.294677734375 2 496.294768 990.574983 0.13164 6.5333E-05 -0.33253 -0.00016503 -0.20089 -9.9701E-05 496.294735634463 55.889 0.76733 59.367 59.029 59.796 3.4785 115 44 3 0 0 0 0.038999 2 12735 12692;12735 53.404 15.43 1 224040 639 4570 406 407 895;896 896 0.07931815108429419 AILEKVFTA 9 Unmodified _AILEKVFTA_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS UPN47_class_I_Rep_2 3 496.29473876953125 2 496.294768 990.574983 0.32597 0.00016178 -0.54897 -0.00027245 -0.223 -0.00011068 496.2946147837266 56.196 0.90996 59.496 59.091 60.001 3.3009 136 54 3 0 0 0 0.088679 3 12831 12786;12831;12953 36.506 11.107 1 238790 640 4570 406 407 897;898;899 898 0.07931815108429419 AILEKVFTA 9 Unmodified _AILEKVFTA_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS UPN47_class_I_Rep_3 4 496.2942199707031 2 496.294768 990.574983 0.17532 8.7011E-05 -0.56426 -0.00028004 -0.38894 -0.00019303 496.29469360921024 56.245 0.95386 59.417 58.977 59.931 3.1721 132 61 3 0 0 0 0.05757 4 12949 12897;12909;12949;12993 45.74 16.556 1 220780 641 4570 406 407 900;901;902;903 902 0.07931815108429419 AILGWPSW 8 Unmodified _AILGWPSW_ 0 0 0 REV__ENST00000533478.5_1_16:81157348-81174942:-|nuORF REV__ENST00000533478.5_1_16:81157348-81174942:-|nuORF MSMS UPN48_class_I_Rep_2 6 465.24627685546875 2 465.247621 928.480688 NaN NaN NaN NaN NaN NaN NaN 105.5 1 109.19 108.69 109.69 3.6901 0 0 0 0.40364 1 24955 24955 5.7604 0 1 + 642 22871 407 408 904 904 0.013587210769401281 AILHISRTRP 10 Unmodified _AILHISRTRP_ 0 0 0 L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|8|1|sense L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|8|1|sense L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|8|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 581.7028198242188 2 582.354014 1162.69348 0.40542 0.0002361 -1.2911 -0.00075187 -0.88566 -0.00051577 582.3534229351901 107.33 0.085564 110.96 110.9 110.99 3.6299 6 4 2 0 0 0 0.84575 1 25874 25874 11.495 1.4208 1 1782100 643 8737 408 409 905 905 0.1186360713677459 AILHISRTRP 10 Unmodified _AILHISRTRP_ 0 0 0 L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|8|1|sense L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|8|1|sense L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|8|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 582.354014 1162.69348 0.50648 0.00029495 -0.78888 -0.00045941 -0.28239 -0.00016445 582.3537318759652 107.51 0.2525 111.05 111 111.25 3.5382 0.035877 0.00031353 NaN 11.495 37 37 2 NaN NaN NaN NaN 0 NaN NaN 0 3851600 644 8737 408 409 0.1186360713677459 AILKGKKT 8 Unmodified _AILKGKKT_ 0 0 0 L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|19|1|sense L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|19|1|sense L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|19|1|sense MSMS UPN48_class_I_Rep_3 7 429.7917175292969 2 429.792195 857.569838 NaN NaN NaN NaN NaN NaN NaN 108.43 1 112.11 111.61 112.61 3.6751 0 0 0 0.40625 1 25661 25661 2.3027 0 1 645 9344 409 410 906 906 0.1353555603644736 AILLLKLYWF 10 Unmodified _AILLLKLYWF_ 0 0 0 L1ME3E_dup235|chr1:108912940-108913734:+|1.5323733014599688|0.1041769198509571|3.88|151.0|35|1|anti-sense L1ME3E_dup235|chr1:108912940-108913734:+|1.5323733014599688|0.1041769198509571|3.88|151.0|35|1|anti-sense L1ME3E_dup235|chr1:108912940-108913734:+|1.5323733014599688|0.1041769198509571|3.88|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_3 4 640.3938598632812 2 640.394285 1278.77402 NaN NaN NaN NaN NaN NaN NaN 55.939 1 59.117 58.617 59.617 3.1779 0 0 0 0.53105 1 12823 12823 0.40072 0 1 646 12805 410 411 907 907 0.14578075407121105 AILLSVNWSIM 11 Unmodified _AILLSVNWSIM_ 0 0 0 REV__MLT1H_dup7344|chr13:21449251-21449629:-|1.573036995335743|0.0115402968673222|7.09|151.0|24|3|anti-sense REV__MLT1H_dup7344|chr13:21449251-21449629:-|1.573036995335743|0.0115402968673222|7.09|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_2 3 416.2347412109375 3 416.233653 1245.67913 NaN NaN NaN NaN NaN NaN NaN 103.61 1 107.14 106.64 107.64 3.5231 0 0 0 0.37149 1 25181 25181 3.8459 0.25323 1 + 647 31748 411 412 908 908 0.06611773873623861 AILLSVNWSIM 11 Unmodified _AILLSVNWSIM_ 0 0 0 REV__MLT1H_dup7344|chr13:21449251-21449629:-|1.573036995335743|0.0115402968673222|7.09|151.0|24|3|anti-sense REV__MLT1H_dup7344|chr13:21449251-21449629:-|1.573036995335743|0.0115402968673222|7.09|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_2 6 416.227783203125 3 416.233653 1245.67913 NaN NaN NaN NaN NaN NaN NaN 104.35 1 108.05 107.55 108.55 3.6991 0 0 0 0.37149 1 24696 24696 3.8459 0.25323 1 + 648 31748 411 412 909 909 0.06611773873623861 AILPKKLAVYK 11 Unmodified _AILPKKLAVYK_ 0 0 0 HSMAR2_dup1406|chr13:32188127-32189397:-|1.206020938935542|0.0818557444172768|3.88|151.0|20|2|sense HSMAR2_dup1406|chr13:32188127-32189397:-|1.206020938935542|0.0818557444172768|3.88|151.0|20|2|sense HSMAR2_dup1406|chr13:32188127-32189397:-|1.206020938935542|0.0818557444172768|3.88|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 622.4130859375 2 622.410466 1242.80638 NaN NaN NaN NaN NaN NaN NaN 82.263 1 85.932 85.432 86.432 3.669 0 0 0 0.38417 1 19539 19539 0.30703 0.03801 1 649 8430 412 413 910 910 0.1946886281011757 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN46_class_I_Rep_3 1 491.7961730957031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.211 1 60.211 59.711 60.711 0 0 0 0 0.4044 1 13345 13345 4.756 0 1 650 2123 413 414 911 911 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_1 2 491.795654296875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.495 1 54.123 53.623 54.623 3.6285 0 0 0 0.40625 1 11077 11077 2.3027 0.24298 1 651 2123 413 414 912 912 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_1 2 491.7961730957031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.912 1 54.54 54.04 55.04 3.6285 0 0 0 0.40625 1 11205 11205 2.3027 0 1 652 2123 413 414 913 913 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 491.7965087890625 2 491.795269 981.575986 0.058513 2.8777E-05 1.5332 0.00075403 1.5917 0.00078281 491.79595390849124 45.035 0.52569 48.391 48.09 48.616 3.3556 43 29 2 0 0 0 0.82752 1 9363 9363 2.3027 0.24298 1 80237 653 2123 413 414 914 914 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_2 3 491.7965393066406 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.554 1 48.907 48.407 49.407 3.3534 0 0 0 0.40625 1 9610 9610 2.3027 0.24298 1 654 2123 413 414 915 915 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_2 3 491.7958068847656 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.732 1 49.085 48.585 49.585 3.3534 0 0 0 0.40625 1 9665 9665 2.3027 0.24298 1 655 2123 413 414 916 916 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_2 3 491.7953186035156 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.992 1 49.346 48.846 49.846 3.3534 0 0 0 0.40625 1 9744 9744 2.3027 0.24298 1 656 2123 413 414 917 917 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_3 4 491.7953186035156 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.801 1 49.045 48.545 49.545 3.2441 0 0 0 0.40625 1 9739 9739 2.3027 0.24298 1 657 2123 413 414 918 918 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_3 4 491.7961120605469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.824 1 49.068 48.568 49.568 3.2441 0 0 0 0.40625 1 9746 9746 2.3027 0 1 658 2123 413 414 919 919 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN47_class_I_Rep_3 4 491.7953796386719 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.948 1 49.192 48.692 49.692 3.2441 0 0 0 0.40625 1 9784 9784 2.3027 0 1 659 2123 413 414 920 920 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 491.79632568359375 2 491.795269 981.575986 0.29021 0.00014273 1.3043 0.00064146 1.5945 0.00078419 491.7957014616444 63.374 0.13073 66.832 66.789 66.92 3.4578 17 9 2 0 0 0 0.82752 1 14268 14268 2.3027 0.24298 1 78672 660 2123 413 414 921 921 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 491.7962341308594 2 491.795269 981.575986 0.2869 0.00014109 1.3091 0.0006438 1.596 0.00078489 491.79591952665777 63.681 0.31292 67.139 66.92 67.233 3.4578 43 27 2 0 0 0 0.82752 1 14348 14348 2.3027 0.24298 1 129970 661 2123 413 414 922 922 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_1 5 491.79559326171875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.788 1 67.246 66.746 67.746 3.4578 0 0 0 0.40625 1 14388 14388 2.3027 0.24298 1 662 2123 413 414 923 923 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_1 5 491.7961120605469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.474 1 69.925 69.425 70.425 3.4516 0 0 0 0.40625 1 15204 15204 2.3027 0.24298 1 663 2123 413 414 924 924 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_1 5 491.79620361328125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 67.06 1 70.512 70.012 71.012 3.4516 0 0 0 0.40625 1 15382 15382 2.3027 0.24298 1 664 2123 413 414 925 925 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_1 5 491.7959289550781 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.93 1 72.385 71.885 72.885 3.4548 0 0 0 0.40625 1 15952 15952 2.3027 0.24298 1 665 2123 413 414 926 926 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_1 5 491.7959289550781 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 71.442 1 74.908 74.408 75.408 3.466 0 0 0 0.40625 1 16702 16702 2.3027 0.24298 1 666 2123 413 414 927 927 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7956848144531 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.779 1 63.266 62.766 63.766 3.4868 0 0 0 0.40625 1 13145 13145 2.3027 0.24298 1 667 2123 413 414 928 928 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.79547119140625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.908 1 63.395 62.895 63.895 3.4868 0 0 0 0.40625 1 13183 13183 2.3027 0 1 668 2123 413 414 929 929 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.79522705078125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.044 1 63.531 63.031 64.031 3.4868 0 0 0 0.40625 1 13225 13225 2.3027 0 1 669 2123 413 414 930 930 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7960205078125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 62.706 1 66.18 65.68 66.68 3.4738 0 0 0 0.40625 1 14037 14037 2.3027 0.24298 1 670 2123 413 414 931 931 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7954406738281 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.232 1 66.706 66.206 67.206 3.4738 0 0 0 0.40625 1 14200 14200 2.3027 0 1 671 2123 413 414 932 932 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7956848144531 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.402 1 66.876 66.376 67.376 3.4738 0 0 0 0.40625 1 14251 14251 2.3027 0.24298 1 672 2123 413 414 933 933 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7958984375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.729 1 67.203 66.703 67.703 3.4743 0 0 0 0.40625 1 14353 14353 2.3027 0 1 673 2123 413 414 934 934 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.79583740234375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.44 1 67.914 67.414 68.414 3.4743 0 0 0 0.40625 1 14569 14569 2.3027 0.24298 1 674 2123 413 414 935 935 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7961730957031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 65.486 1 68.965 68.465 69.465 3.4792 0 0 0 0.40404 1 14889 14889 5.2307 0 1 675 2123 413 414 936 936 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.79681396484375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.223 1 69.71 69.21 70.21 3.4866 0 0 0 0.40625 1 15113 15113 2.3027 0.24298 1 676 2123 413 414 937 937 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7962951660156 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 67.2 1 70.696 70.196 71.196 3.4964 0 0 0 0.40625 1 15412 15412 2.3027 0.24298 1 677 2123 413 414 938 938 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.7951965332031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.598 1 72.106 71.606 72.606 3.5083 0 0 0 0.40625 1 15829 15829 2.3027 0 1 678 2123 413 414 939 939 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.796630859375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.91 1 72.419 71.919 72.919 3.5083 0 0 0 0.40625 1 15926 15926 2.3027 0 1 679 2123 413 414 940 940 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_2 6 491.79595947265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 69.069 1 72.59 72.09 73.09 3.5216 0 0 0 0.40625 1 15974 15974 2.3027 0.4585 1 680 2123 413 414 941 941 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 491.7965087890625 2 491.795269 981.575986 0.2759 0.00013568 1.2517 0.00061559 1.5276 0.00075127 491.795705617612 65.033 0.65186 68.541 68.115 68.767 3.5077 67 48 2 0 0 0 0.82752 3 14585 14585;14698;14717 2.3027 0.24298 1 117190 681 2123 413 414 942;943;944 942 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 491.7962341308594 2 491.795269 981.575986 0.30255 0.00014879 3.0187 0.0014846 3.3212 0.0016334 491.79650857680514 68.244 0.10238 71.753 71.692 71.795 3.5094 11 8 2 0 0 0 0.82752 1 15642 15642 2.3027 0.24298 1 37064 682 2123 413 414 945 945 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 491.7964172363281 2 491.795269 981.575986 0.30552 0.00015025 1.2911 0.00063494 1.5966 0.00078519 491.7957578196353 68.783 0.17714 72.292 72.186 72.363 3.5094 15 12 2 0 0 0 0.82752 1 15803 15803 2.3027 0.24298 1 75000 683 2123 413 414 946 946 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 491.7956848144531 2 491.795269 981.575986 0.29955 0.00014731 0.10808 5.3154E-05 0.40763 0.00020047 491.79556512373216 71.324 0.065079 74.843 74.828 74.893 3.5185 6 5 2 0 0 0 0.82752 1 16558 16558 2.3027 2.3027 1 28594 684 2123 413 414 947 947 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.79638671875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.35 1 66.859 66.359 67.359 3.5091 0 0 0 0.40625 1 14156 14156 2.3027 0 1 685 2123 413 414 948 948 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.7964172363281 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.587 1 67.096 66.596 67.596 3.5091 0 0 0 0.40625 1 14228 14228 2.3027 0.24298 1 686 2123 413 414 949 949 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.795654296875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.473 1 67.982 67.482 68.482 3.5083 0 0 0 0.40625 1 14498 14498 2.3027 0.24298 1 687 2123 413 414 950 950 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.79583740234375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 65.366 1 68.874 68.374 69.374 3.5077 0 0 0 0.40625 1 14766 14766 2.3027 0.24298 1 688 2123 413 414 951 951 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.7952880859375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.101 1 69.608 69.108 70.108 3.5077 0 0 0 0.40625 1 14989 14989 2.3027 0.24298 1 689 2123 413 414 952 952 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.7960205078125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.431 1 69.938 69.438 70.438 3.5077 0 0 0 0.40625 1 15087 15087 2.3027 0.24298 1 690 2123 413 414 953 953 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MSMS UPN48_class_I_Rep_3 7 491.7957763671875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 69.018 1 72.527 72.027 73.027 3.5094 0 0 0 0.40625 1 15867 15867 2.3027 0.24298 1 691 2123 413 414 954 954 0.08446074267988024 AILRQWVP 8 Unmodified _AILRQWVP_ 0 0 0 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron ENSG00000115295.20,CLIP4,chr2,+,I16.1,29160468,29163830|31|6.44|1|intron MULTI-MATCH UPN48_class_I_Rep_1 5 2 491.795269 981.575986 0.20374 0.0001002 0.78344 0.00038529 0.98718 0.00048549 491.7958288894947 71.099 0.022263 74.565 74.55 74.572 3.466 -0.13871 0.00038323 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 25335 692 2123 413 414 0.08446074267988024 AILTIWLFKY 10 Unmodified _AILTIWLFKY_ 0 0 0 ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.8784790039062 2 634.376092 1266.73763 0.56686 0.0003596 1.3878 0.00088038 1.9546 0.00124 634.3774642104465 106.34 0.13445 110.05 109.99 110.12 3.7088 28 18 2 0 0 0 0.56333 1 26070 26070 1.4819 0 1 265500 693 7421 414 415 955 955 0.11493198510424918 AILTIWLFKY 10 Unmodified _AILTIWLFKY_ 0 0 0 ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.8781127929688 2 634.376092 1266.73763 0.56681 0.00035957 1.6538 0.0010491 2.2206 0.0014087 634.3775507863935 106.43 0.087112 110.14 110.12 110.21 3.7088 17 12 2 0 0 0 0.56333 1 26107 26107 1.4819 0 1 144330 694 7421 414 415 956 956 0.11493198510424918 AILTIWLFKY 10 Unmodified _AILTIWLFKY_ 0 0 0 ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 634.3787841796875 2 634.376092 1266.73763 0.63453 0.00040253 1.7391 0.0011033 2.3737 0.0015058 634.3777199969353 106.44 0.13304 109.98 109.95 110.08 3.5345 32 19 2 0 0 0 0.56333 1 25795 25795 1.4819 0 1 290770 695 7421 414 415 957 957 0.11493198510424918 AILTIWLFKY 10 Unmodified _AILTIWLFKY_ 0 0 0 ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF ENST00000554295.1_1_12:98850353-98850914:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 634.87841796875 2 634.376092 1266.73763 0.49722 0.00031543 1.6685 0.0010585 2.1657 0.0013739 634.3773287128755 106.29 0.15008 109.97 109.87 110.02 3.6834 28 20 2 0 0 0 0.56333 1 25132 25132 1.4819 0 1 119070 696 7421 414 415 958 958 0.11493198510424918 AIMMWVWL 8 Unmodified _AIMMWVWL_ 0 0 0 REV__L1MCa_dup3024|chr7:29664495-29665273:+|1.2608226123660349|0.1559122137060197|3.02|150.0|43|2|anti-sense REV__L1MCa_dup3024|chr7:29664495-29665273:+|1.2608226123660349|0.1559122137060197|3.02|150.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.26904296875 2 525.269184 1048.52382 NaN NaN NaN NaN NaN NaN NaN 88.248 1 91.904 91.404 92.404 3.6563 0 0 0 0.4032 1 22069 22069 6.3541 2.0249 1 + 697 27197 415 416 959 959 0.0014945153836833924 AIMWWLVAFA 10 Unmodified _AIMWWLVAFA_ 0 0 0 ENSG00000121361|ENST00000240662|KCNJ8 ENSG00000121361|ENST00000240662|KCNJ8 ENSG00000121361|ENST00000240662|KCNJ8 MSMS UPN47_class_I_Rep_1 2 604.77392578125 2 604.320263 1206.62597 NaN NaN NaN NaN NaN NaN NaN 45.874 1 49.574 49.074 50.074 3.6999 0 0 0 0.53105 1 9677 9677 1.8442 0.36234 1 698 2355 416 417 960 960 0.030924408816190407 AINIRVHLS 9 Unmodified _AINIRVHLS_ 0 0 0 L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|313|3|anti-sense;L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|192|1|anti-sense L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|313|3|anti-sense L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|313|3|anti-sense MSMS UPN47_class_I_Rep_3 4 511.767822265625 2 511.808908 1021.60326 NaN NaN NaN NaN NaN NaN NaN 63.45 1 66.62 66.12 67.12 3.1698 0 0 0 0.38639 1 15111 15111 3.9444 0 1 699 14204 417 418 961 961 0.09332557808374986 AINSKPRKV 9 Unmodified _AINSKPRKV_ 0 0 0 REV__ENSG00000119522.16,DENND1A,chr9,-,I31.1,123382626,123383654|29|5.22|1|intron REV__ENSG00000119522.16,DENND1A,chr9,-,I31.1,123382626,123383654|29|5.22|1|intron MULTI-SECPEP UPN48_class_I_Rep_3 7 506.3153076171875 2 506.816733 1011.61891 0.28464 0.00014426 0.41482 0.00021024 0.69945 0.0003545 506.8170249204525 90.249 0.15851 94.096 94.044 94.202 3.847 31 22 2 0 0 0 0.12281 1 21418 21418 4.3292 0.38484 1 84156 + 700 18676 418 419 962 962 0.1135684432541666 AIPAILHRSVR 11 Unmodified _AIPAILHRSVR_ 0 0 0 ENST00000462934.5_1_7:6449470-6461666:-|nuORF ENST00000462934.5_1_7:6449470-6461666:-|nuORF ENST00000462934.5_1_7:6449470-6461666:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 616.4071655273438 2 616.882939 1231.75132 0.54309 0.00033502 -0.64184 -0.00039594 -0.098749 -6.0916E-05 616.8822221662632 108.19 0.34926 111.83 111.63 111.97 3.6355 38 33 2 0 0 0 22.551 1 26521 26521 16.149 7.4037 1 788800 701 6873 419 420 963 963 0.14471869062208498 AIPAILHRSVR 11 Unmodified _AIPAILHRSVR_ 0 0 0 ENST00000462934.5_1_7:6449470-6461666:-|nuORF ENST00000462934.5_1_7:6449470-6461666:-|nuORF ENST00000462934.5_1_7:6449470-6461666:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 616.882939 1231.75132 0.63445 0.00039138 -0.79676 -0.00049151 -0.16231 -0.00010013 616.8822080421959 108.2 0.060371 111.74 111.72 111.78 3.5333 -0.03705 -0.00025536 NaN 16.149 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 965810 702 6873 419 420 0.14471869062208498 AIPARRLSPL 10 Unmodified _AIPARRLSPL_ 0 0 0 ENSG00000213171|ENST00000368820|LINGO4 ENSG00000213171|ENST00000368820|LINGO4 ENSG00000213171|ENST00000368820|LINGO4 MSMS UPN47_class_I_Rep_3 4 547.3449096679688 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 93.264 1 96.669 96.169 97.169 3.4052 0 0 0 0.53105 1 23256 23256 1.6526 0.17072 1 703 5584 420 421 964 964 0.13413106250845885 AIPASLGMKL 10 Unmodified _AIPASLGMKL_ 0 0 0 ENSG00000179148|ENST00000448843|ALOXE3;nc|ENSG00000179148|Q9BYJ1-2|ALOXE3 ENSG00000179148|ENST00000448843|ALOXE3 ENSG00000179148|ENST00000448843|ALOXE3 MSMS UPN48_class_I_Rep_2 6 500.7983093261719 2 500.79662 999.578688 NaN NaN NaN NaN NaN NaN NaN 85.246 1 88.951 88.451 89.451 3.7058 0 0 0 0.53105 1 20269 20269 5.2969 0.066215 1 704 4851 421 422 965 965 0.07888161610628686 AIPAVANWIKR 11 Unmodified _AIPAVANWIKR_ 0 0 0 ENSG00000163106|ENST00000295256|HPGDS ENSG00000163106|ENST00000295256|HPGDS ENSG00000163106|ENST00000295256|HPGDS MSMS UPN48_class_I_Rep_1 5 619.8695678710938 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.444 1 91.063 90.563 91.563 3.6187 0 0 0 0.38417 1 20955 20955 2.9952 0 1 705 3982 422 423 966 966 0.12017064313636183 AIPDPRLQEAR 11 Unmodified _AIPDPRLQEAR_ 0 0 0 REV__ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|63|3|anti-sense REV__ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 633.3692016601562 2 633.351668 1264.68878 NaN NaN NaN NaN NaN NaN NaN 88.754 1 92.41 91.91 92.91 3.6563 0 0 0 0.37931 1 22196 22196 7.1017 0.89594 1 + 706 23260 423 424 967 967 0.06702678203350843 AIPELKASIK 10 Unmodified _AIPELKASIK_ 0 0 0 ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2 ENSG00000146701|ENST00000315758|MDH2 ENSG00000146701|ENST00000315758|MDH2 MSMS UPN46_class_I_Rep_3 1 535.3358154296875 2 535.334424 1068.6543 NaN NaN NaN NaN NaN NaN NaN 108.77 1 108.77 108.27 109.27 0 0 0 0 0.53105 1 26626 26626 8.1555 0.8663 1 707 3441 424 425 968 968 0.12271462062540195 AIPFRLRLTA 10 Unmodified _AIPFRLRLTA_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MSMS UPN48_class_I_Rep_3 7 579.361572265625 2 579.361308 1156.70806 NaN NaN NaN NaN NaN NaN NaN 108.87 1 112.54 112.04 113.04 3.6751 0 0 0 0.53105 1 25817 25817 10.074 0.6908 1 + 708 18421 425 426 969 969 0.13597679284930564 AIPLWVFQPIV 11 Unmodified _AIPLWVFQPIV_ 0 0 0 REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|263|2|anti-sense REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|263|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 641.8824462890625 2 641.881542 1281.74853 0.7499 0.00048135 1.1843 0.00076021 1.9342 0.0012416 641.8821505468109 92.505 0.20961 92.505 92.415 92.624 0 30 23 2 0 0 0 0.67264 1 22366 22366 1.1933 0.12188 1 173900 + 709 23914 426 427 970 970 0.11892600884698368 AIPNLVKNLP 10 Unmodified _AIPNLVKNLP_ 0 0 0 nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;ENSG00000198561|ENST00000399050|CTNND1 nc|ENSG00000198561|O60716-32|CTNND1 nc|ENSG00000198561|O60716-32|CTNND1 MSMS UPN48_class_I_Rep_3 7 539.832275390625 2 539.834591 1077.65463 NaN NaN NaN NaN NaN NaN NaN 85.751 1 89.521 89.021 90.021 3.7701 0 0 0 0.53105 1 20343 20343 1.4819 0.79152 1 710 5439 427 428 971 971 0.11890881782414908 AIPRKKRMPW 10 Unmodified _AIPRKKRMPW_ 0 0 0 ENST00000368194.7_1_1:156921476-156926255:-|nuORF ENST00000368194.7_1_1:156921476-156926255:-|nuORF ENST00000368194.7_1_1:156921476-156926255:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 641.8832397460938 2 641.881884 1281.74922 0.5497 0.00035284 0.81364 0.00052226 1.3633 0.0008751 641.8822552178544 89.298 0.58192 92.971 92.841 93.423 3.6738 129 67 3 0 0 0 0.56486 1 22432 22432 0.40072 0.40072 1 138420 711 6363 428 429 972 972 0.11961117052783266 AIPRKKRMPW 10 Unmodified _AIPRKKRMPW_ 0 0 0 ENST00000368194.7_1_1:156921476-156926255:-|nuORF ENST00000368194.7_1_1:156921476-156926255:-|nuORF ENST00000368194.7_1_1:156921476-156926255:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 641.8828125 2 641.881884 1281.74922 0.65242 0.00041878 0.82396 0.00052888 1.4764 0.00094766 641.8822305227612 89.127 0.3238 92.956 92.879 93.203 3.8293 73 40 2 0 0 0 0.56486 1 21200 21200 0.40072 0 1 201460 712 6363 428 429 973 973 0.11961117052783266 AIQEKFIQY 9 Unmodified _AIQEKFIQY_ 0 0 0 REV__L1MA8_dup1438|chr2:230453373-230455060:-|2.706792831951424|0.1725445602743921|3.97|151.0|15|1|sense REV__L1MA8_dup1438|chr2:230453373-230455060:-|2.706792831951424|0.1725445602743921|3.97|151.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 570.2953491210938 2 570.308406 1138.60226 NaN NaN NaN NaN NaN NaN NaN 56.27 1 59.728 59.228 60.228 3.4572 0 0 0 0.38478 1 12838 12838 4.3292 0.38484 1 + 713 25532 429 430 974 974 0.03850298648808348 AIQVLRFHL 9 Unmodified _AIQVLRFHL_ 0 0 0 ENST00000466811.2_1_2:66668130-66681852:+|nuORF;ENST00000491706.5_1_2:66667732-66670276:+|nuORF;ENSG00000134138|ENST00000561208|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;nc|ENSG00000143995|O00470-2|MEIS1;nc|ENSG00000105419|Q99687-2|MEIS3;ENSG00000143995.20,MEIS1,chr2,+,I2.1,66435869,66436916|39|9.85|3|intron;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;ENSG00000143995|ENST00000272369|MEIS1;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-7|MEIS2;ENST00000561204.5_1_19:47909736-47921444:-|nuORF;ENSG00000105419|ENST00000558555|MEIS3;nc|ENSG00000105419|Q99687-3|MEIS3;nc|ENSG00000188013|A8K0S8|MEIS3P2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-6|MEIS2;nc|ENSG00000134138|O14770-5|MEIS2;ENSG00000143995.20,MEIS1,chr2,+,I2.1,66435869,66436916|39|9.85|1|intron;nc|ENSG00000179277|A6NDR6|MEIS3P1;ENSG00000143995.20,MEIS1,chr2,+,I2.1,66435869,66436916|39|9.85|4|intron ENST00000466811.2_1_2:66668130-66681852:+|nuORF ENST00000466811.2_1_2:66668130-66681852:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 548.835205078125 2 548.834926 1095.6553 0.43465 0.00023855 0.29895 0.00016408 0.7336 0.00040263 548.8349201733058 109.24 0.84178 112.92 112.81 113.65 3.6751 220 117 2 0 0 0 0.40174 1 25955 25955 7.9102 0.62092 1 5455200 714 1737 430 431 975 975 0.11129721222141598 AIRIYSLVP 9 Unmodified _AIRIYSLVP_ 0 0 0 REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|145|1|anti-sense REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|145|1|anti-sense MSMS UPN47_class_I_Rep_3 4 516.3172607421875 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.38 1 110.92 110.42 111.42 3.5382 0 0 0 0.29868 1 26222 26222 10.824 0 1 + 715 29431 431 432 976 976 0.1034321023666962 AIRLLLFIFSS 11 Unmodified _AIRLLLFIFSS_ 0 0 0 REV__L1ME3G_dup6910|chr7:38365124-38365862:+|1.2016156260747857|0.0323306508562588|5.22|151.0|41|2|anti-sense REV__L1ME3G_dup6910|chr7:38365124-38365862:+|1.2016156260747857|0.0323306508562588|5.22|151.0|41|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 427.302734375 3 427.263941 1278.76999 0.008217 3.5108E-06 2.4953 0.0010661 2.5035 0.0010697 427.2653528939628 62.457 0.3821 65.825 65.747 66.129 3.3681 32 20 2 0 0 0 22.551 1 14722 14722 2.6312 1.4164 1 123330 + 716 28201 432 433 977 977 0.14175985913402656 AIRNDEEL 8 Unmodified _AIRNDEEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN46_class_I_Rep_3 1 480.2430419921875 2 480.243264 958.471974 0.014244 6.8406E-06 -0.15541 -7.4633E-05 -0.14116 -6.7792E-05 480.24324315790466 30.364 0.64416 30.364 30.105 30.749 0 76 50 2 0 0 0 0.82752 1 4931 4931 6.2058 1.8765 1 123820 717 4893 433 434 978 978 -0.008922973501853448 AIRQPCVD 8 Unmodified _AIRQPCVD_ 0 0 0 MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|3|1|sense MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|3|1|sense MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 451.23101806640625 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 99.712 1 103.16 102.66 103.66 3.4483 0 0 0 0.40625 1 24643 24643 2.3027 0.24298 1 718 16125 434 435 979 979 -0.005470146685070176 AISEVAGQFV 10 Unmodified _AISEVAGQFV_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS UPN47_class_I_Rep_1 2 510.7716979980469 2 510.771657 1019.52876 0.25874 0.00013216 -0.22493 -0.00011489 0.033805 1.7267E-05 510.7714791957259 77.611 0.65173 81.04 80.752 81.403 3.4289 175 63 3 0 0 0 0.4965 1 19207 19207 12.241 2.8575 1 589330 + 719 17829 435 436 980 980 0.019777502063448082 AISEVAGQFV 10 Unmodified _AISEVAGQFV_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS UPN47_class_I_Rep_2 3 510.77154541015625 2 510.771657 1019.52876 0.16687 8.5233E-05 -0.14098 -7.2008E-05 0.025891 1.3225E-05 510.77153325544026 77.767 0.76114 81.11 80.776 81.537 3.3428 193 79 3 0 0 0 0.31818 2 19270 19270;19339 27.629 3.6082 1 578620 + 720 17829 435 436 981;982 981 0.019777502063448082 AISEVAGQFV 10 Unmodified _AISEVAGQFV_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS UPN47_class_I_Rep_3 4 510.7712097167969 2 510.771657 1019.52876 0.28731 0.00014675 -0.27449 -0.0001402 0.012829 6.5526E-06 510.77145096419446 77.855 0.66341 81.137 80.797 81.46 3.2816 195 72 3 0 0 0 0.31818 1 19334 19334 27.629 3.6082 1 607120 + 721 17829 435 436 983 983 0.019777502063448082 AISFVSIHF 9 Unmodified _AISFVSIHF_ 0 0 0 L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|193|1|anti-sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|193|1|anti-sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|193|1|anti-sense MSMS UPN47_class_I_Rep_2 3 510.7812194824219 2 510.779285 1019.54402 NaN NaN NaN NaN NaN NaN NaN 58.184 1 61.466 60.966 61.966 3.2818 0 0 0 0.38478 1 13450 13450 4.3292 0 1 722 9348 436 437 984 984 0.035026617941980476 AISVCLRTIA 10 Unmodified _AISVCLRTIA_ 0 0 0 L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|117|1|anti-sense L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|117|1|anti-sense L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|117|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.6779174804688 2 523.804977 1045.5954 0.31582 0.00016543 0.64114 0.00033583 0.95696 0.00050126 523.8052956657681 81.016 0.88889 81.016 80.487 81.375 0 115 94 2 0 0 0 0.56118 1 19033 19033 2.9952 0.41776 1 282880 723 13882 437 438 985 985 0.0744266249660086 AISVCLRTIA 10 Unmodified _AISVCLRTIA_ 0 0 0 L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|117|1|anti-sense L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|117|1|anti-sense L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|117|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 523.804977 1045.5954 0.31582 0.00016543 0.64114 0.00033583 0.95696 0.00050126 523.8052956657681 81.016 0.88889 81.016 80.487 81.375 0 0 0 NaN 2.9952 115 94 2 NaN NaN NaN NaN 0 NaN NaN 0 282880 724 13882 437 438 0.0744266249660086 AITAHGSVPPV 11 Unmodified _AITAHGSVPPV_ 0 0 0 REV__nc|ENSG00000196498|Q9Y618-2|NCOR2 REV__nc|ENSG00000196498|Q9Y618-2|NCOR2 MULTI-MSMS UPN48_class_I_Rep_1 5 524.7926635742188 2 524.792924 1047.57129 0.32622 0.0001712 -0.58071 -0.00030475 -0.25448 -0.00013355 524.7925053877321 38.104 0.66457 41.609 41.341 42.006 3.5052 76 59 2 0 0 0 0.65559 1 6614 6614 2.7352 0.23671 1 123010 + 725 21043 438 439 986 986 0.049411453345555856 AITFIFRK 8 Unmodified _AITFIFRK_ 0 0 0 L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|67|1|anti-sense L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|67|1|anti-sense L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_2 3 498.306884765625 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 47.226 1 50.577 50.077 51.077 3.3515 0 0 0 0.40643 1 10120 10120 2.0598 0.21551 1 726 13210 439 440 987 987 0.09887244927790562 AITFLEPI 8 Unmodified _AITFLEPI_ 0 0 0 REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|14|1|sense REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 452.26361083984375 2 452.262936 902.51132 NaN NaN NaN NaN NaN NaN NaN 60.919 1 64.393 63.893 64.893 3.4737 0 0 0 0.40604 1 13515 13515 2.5775 0 1 + 727 29328 440 441 988 988 0.05616454671314841 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS UPN46_class_I_Rep_3 1 464.2790222167969 2 464.279118 926.543683 0.16958 7.8733E-05 0.017531 8.1392E-06 0.18711 8.6872E-05 464.2790363737983 50.1 0.66054 50.1 49.683 50.343 0 147 74 3 0 0 0 0.0203 3 10564 10526;10564;10624 63.227 32.591 1 1116800 728 4928 441 442 989;990;991 990 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS UPN47_class_I_Rep_1 2 464.2789611816406 2 464.279118 926.543683 -0.19302 -8.9617E-05 -0.28556 -0.00013258 -0.47859 -0.0002222 464.2788530765274 45.051 0.90827 48.751 48.373 49.281 3.6999 117 55 3 0 0 0 0.13244 1 9355 9355 27.629 2.2295 1 236820 729 4928 441 442 992 992 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS UPN47_class_I_Rep_2 3 464.27886962890625 2 464.279118 926.543683 -0.22269 -0.00010339 -0.33954 -0.00015764 -0.56223 -0.00026103 464.2788518393048 45.329 0.90651 48.682 48.313 49.22 3.3534 96 55 2 0 0 0 0.13244 1 9510 9510 27.629 2.2295 1 261970 730 4928 441 442 993 993 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-SECPEP UPN47_class_I_Rep_3 4 464.27886962890625 2 464.279118 926.543683 -0.28594 -0.00013276 -0.25613 -0.00011892 -0.54208 -0.00025168 464.27887250208465 45.521 0.81778 48.765 48.358 49.176 3.2441 92 49 2 0 0 0 0.10834 1 9597 9597 8.9762 0.23084 1 261610 731 4928 441 442 994 994 0.07747242074333371 AIVDQVLSFG 10 Unmodified _AIVDQVLSFG_ 0 0 0 REV__ENSG00000013588|ENST00000014914|GPRC5A REV__ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS UPN47_class_I_Rep_1 2 524.7874145507812 2 524.787307 1047.56006 0.31283 0.00016417 -0.26388 -0.00013848 0.048947 2.5687E-05 524.7871093238286 73.821 0.81139 77.207 76.9 77.712 3.3861 219 78 4 0 0 0 0.27282 2 18147 18147;18181 36.506 2.2118 1 583100 + 732 17591 442 443 995;996 995 0.03818323240443533 AIVDQVLSFG 10 Unmodified _AIVDQVLSFG_ 0 0 0 REV__ENSG00000013588|ENST00000014914|GPRC5A REV__ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS UPN47_class_I_Rep_2 3 524.7872314453125 2 524.787307 1047.56006 0.081681 4.2865E-05 -0.048304 -2.535E-05 0.033377 1.7516E-05 524.7872050853895 74.014 0.90594 77.318 76.939 77.845 3.3048 265 92 4 0 0 0 0.27282 1 18189 18189 36.506 2.1045 1 653320 + 733 17591 442 443 997 997 0.03818323240443533 AIVDVVANR 9 Unmodified _AIVDVVANR_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MSMS UPN48_class_I_Rep_3 7 478.7799987792969 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 40.248 1 43.899 43.399 44.399 3.6509 0 0 0 0.20399 1 7135 7135 16.149 3.6176 1 734 3076 443 444 998 998 0.0655287616308442 AIVDVVANR 9 Unmodified _AIVDVVANR_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MSMS UPN48_class_I_Rep_3 7 478.7796325683594 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 40.408 1 44.059 43.559 44.559 3.6509 0 0 0 0.070158 1 7181 7181 31.268 17.362 1 735 3076 443 444 999 999 0.0655287616308442 AIVLGLPLWW 10 Unmodified _AIVLGLPLWW_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;ENST00000577594.5_1_17:26890803-26898514:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MSMS UPN46_class_I_Rep_3 1 584.34814453125 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 48.843 1 48.843 48.343 49.343 0 0 0 0 0.53105 1 10209 10209 1.8442 0.36234 1 736 1291 444 445 1000 1000 0.10852660167461181 AIVSILTYIW 10 Unmodified _AIVSILTYIW_ 0 0 0 ENSG00000119915|ENST00000370005|ELOVL3 ENSG00000119915|ENST00000370005|ELOVL3 ENSG00000119915|ENST00000370005|ELOVL3 MSMS UPN48_class_I_Rep_2 6 589.8450927734375 2 589.844625 1177.6747 NaN NaN NaN NaN NaN NaN NaN 84.158 1 87.851 87.351 88.351 3.6937 0 0 0 0.53105 1 20027 20027 1.6526 0 1 737 2304 445 446 1001 1001 0.09296632722362119 AIWAGPKLAA 10 Unmodified _AIWAGPKLAA_ 0 0 0 L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|116|3|sense L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|116|3|sense L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|116|3|sense MSMS UPN47_class_I_Rep_2 3 499.2604064941406 2 499.295102 996.575651 NaN NaN NaN NaN NaN NaN NaN 28.621 1 32.119 31.619 32.619 3.4986 0 0 0 0.53105 1 4466 4466 1.8442 0 1 738 14736 446 447 1002 1002 0.07722654548115315 AIWFWAFI 8 Unmodified _AIWFWAFI_ 0 0 0 L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|255|3|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|255|3|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|255|3|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2821655273438 2 527.281463 1052.54837 NaN NaN NaN NaN NaN NaN NaN 28.177 1 31.92 31.42 32.42 3.7424 0 0 0 0.40581 1 3800 3800 2.8892 0.58649 1 739 9326 447 448 1003 1003 0.0242017100774774 AIWWIIRTPI 10 Unmodified _AIWWIIRTPI_ 0 0 0 nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR nc|ENSG00000010310|P48546-2|GIPR nc|ENSG00000010310|P48546-2|GIPR MULTI-SECPEP UPN48_class_I_Rep_1 5 634.3776245117188 2 634.879333 1267.74411 0.4322 0.00027439 -1.0824 -0.0006872 -0.65021 -0.0004128 634.8785626333892 105.33 0.16492 108.95 108.86 109.02 3.6247 46 23 2 0 0 0 0.84575 1 25364 25364 3.5965 2.267 1 1954100 740 755 448 449 1004 1004 0.12095136461812217 AIWWIIRTPI 10 Unmodified _AIWWIIRTPI_ 0 0 0 nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR nc|ENSG00000010310|P48546-2|GIPR nc|ENSG00000010310|P48546-2|GIPR MULTI-MATCH UPN47_class_I_Rep_3 4 2 634.879333 1267.74411 0.51352 0.00032602 -1.3808 -0.00087661 -0.86723 -0.00055059 634.8784991953007 105.16 0.4902 108.69 108.63 109.12 3.5308 -0.12991 -0.00010459 NaN 3.5965 115 76 2 NaN NaN NaN NaN 0 NaN NaN 0 13341000 741 755 448 449 0.12095136461812217 AIWYDWRR 8 Unmodified _AIWYDWRR_ 0 0 0 ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP ENSG00000136449|ENST00000323776|MYCBPAP ENSG00000136449|ENST00000323776|MYCBPAP MSMS UPN47_class_I_Rep_1 2 583.2805786132812 2 583.298707 1164.58286 NaN NaN NaN NaN NaN NaN NaN 45.845 1 49.545 49.045 50.045 3.6999 0 0 0 0.40738 1 9668 9668 0.79363 0.19213 1 742 2970 449 450 1005 1005 0.007153871485343188 AIYTKELTL 9 Unmodified _AIYTKELTL_ 0 0 0 REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|23|1|sense REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 526.3146362304688 2 526.305332 1050.59611 NaN NaN NaN NaN NaN NaN NaN 72.152 1 75.371 74.871 75.871 3.2188 0 0 0 0.15455 1 17745 17745 19.257 0 1 + 743 28915 450 451 1006 1006 0.07283780417265007 AKAGGWEVEVI 11 Unmodified _AKAGGWEVEVI_ 0 0 0 SVA_B_dup145|chr3:138784398-138785837:+|1.768282976272611|0.0362237101297497|5.61|151.0|60|3|anti-sense SVA_B_dup145|chr3:138784398-138785837:+|1.768282976272611|0.0362237101297497|5.61|151.0|60|3|anti-sense SVA_B_dup145|chr3:138784398-138785837:+|1.768282976272611|0.0362237101297497|5.61|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_1 5 579.8131713867188 2 579.811313 1157.60807 NaN NaN NaN NaN NaN NaN NaN 55.984 1 59.486 58.986 59.986 3.5014 0 0 0 0.38417 1 12003 12003 2.9952 0.69251 1 744 32843 451 452 1007 1007 0.035573971604890176 AKCVLGQFCH 10 Unmodified _AKCVLGQFCH_ 0 0 0 Tigger3a_dup57|chr1:35969638-35970021:-|1.7293398648578542|0.0461723888380645|5.23|151.0|21|2|anti-sense Tigger3a_dup57|chr1:35969638-35970021:-|1.7293398648578542|0.0461723888380645|5.23|151.0|21|2|anti-sense Tigger3a_dup57|chr1:35969638-35970021:-|1.7293398648578542|0.0461723888380645|5.23|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2581787109375 2 553.267704 1104.52086 NaN NaN NaN NaN NaN NaN NaN 35.452 1 38.863 38.363 39.363 3.4114 0 0 0 0.53105 1 6538 6538 3.2813 0.39209 1 745 33363 452 453 1008 1008 -0.027224235864650836 AKDWVFTTL 9 Unmodified _AKDWVFTTL_ 0 0 0 nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 nc|ENSG00000162571|Q6ZVT0-3|TTLL10 MULTI-MSMS UPN47_class_I_Rep_2 3 540.7882690429688 2 540.78985 1079.56515 0.47573 0.00025727 -3.287 -0.0017776 -2.8112 -0.0015203 540.7881865245791 58.373 0.099606 61.655 61.608 61.708 3.2818 7 5 2 0 0 0 0.43153 1 13518 13518 6.2058 0.47393 1 149690 746 3941 453 454 1009 1009 0.028546271030336356 AKECLTSNYV 10 Unmodified _AKECLTSNYV_ 0 0 0 L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|327|3|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|327|3|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|327|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2584838867188 2 564.273706 1126.53286 NaN NaN NaN NaN NaN NaN NaN 20.261 1 23.668 23.168 24.168 3.4074 0 0 0 0.53105 1 2069 2069 1.1933 0 1 747 14545 454 455 1010 1010 -0.025345283622982606 AKFFQTYK 8 Unmodified _AKFFQTYK_ 0 0 0 L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|12|1|sense L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|12|1|sense L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 516.79150390625 2 516.779285 1031.54402 NaN NaN NaN NaN NaN NaN NaN 66.518 1 66.518 66.018 67.018 0 0 0 0 0.40625 1 15097 15097 2.3027 0.24298 1 748 14210 455 456 1011 1011 0.029506617941933655 AKFNKKQY 8 Unmodified _AKFNKKQY_ 0 0 0 REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|10|1|sense REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 514.2763061523438 2 513.790184 1025.56581 0.28651 0.00014721 -0.86366 -0.00044374 -0.57714 -0.00029653 513.7892910202225 46.264 0.090733 46.264 46.21 46.301 0 11 9 2 0 0 0 0.82752 1 9480 9480 9.3474 0.75416 1 67372 + 749 30292 456 457 1012 1012 0.05405466542742943 AKFRKQERA 9 Unmodified _AKFRKQERA_ 0 0 0 ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B ENSG00000165462|ENST00000298231|PHOX2A ENSG00000165462|ENST00000298231|PHOX2A MULTI-MSMS UPN46_class_I_Rep_3 1 567.3300170898438 2 567.330539 1132.64652 0.46311 0.00026274 -0.8746 -0.00049619 -0.41149 -0.00023345 567.3299092835357 87.339 0.47678 87.339 87.216 87.693 0 74 41 2 0 0 0 0.36392 2 20953 20953;20993 10.074 4.3421 1 2104900 750 1889 457 458 1013;1014 1013 0.0855074758567298 AKFRKQERA 9 Unmodified _AKFRKQERA_ 0 0 0 ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B ENSG00000165462|ENST00000298231|PHOX2A ENSG00000165462|ENST00000298231|PHOX2A MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 567.330539 1132.64652 0.53539 0.00030374 -1.1809 -0.00066997 -0.64553 -0.00036623 567.3296812114305 83.608 2.1298 87.019 86.084 88.213 3.4116 -0.21282 9.7957E-06 NaN 10.074 467 276 3 NaN NaN NaN NaN 0 NaN NaN 0 501860 751 1889 457 458 0.0855074758567298 AKFRKQERA 9 Unmodified _AKFRKQERA_ 0 0 0 ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B ENSG00000165462|ENST00000298231|PHOX2A ENSG00000165462|ENST00000298231|PHOX2A MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 567.330539 1132.64652 0.43012 0.00024402 -1.296 -0.00073527 -0.8659 -0.00049125 567.3296099587885 83.835 0.29581 87.433 87.333 87.629 3.5973 0.20059 -0.0001208 NaN 10.074 91 35 3 NaN NaN NaN NaN 0 NaN NaN 0 318850 752 1889 457 458 0.0855074758567298 AKGGSRTPR 9 Unmodified _AKGGSRTPR_ 0 0 0 REV__chr17:58280017-58280366|93|344.75|0.01|15.61|-|2|None,MPO|1 REV__chr17:58280017-58280366|93|344.75|0.01|15.61|-|2|None,MPO|1 MULTI-MSMS UPN46_class_I_Rep_3 1 465.2703552246094 2 465.267407 928.520262 0.22754 0.00010587 2.7435 0.0012765 2.971 0.0013823 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.49026 1 25407 25407 1.6526 0.85899 1 4396600 + 753 17439 458 459 1015 1015 0.053142410803729945 AKGKAKIT 8 Unmodified _AKGKAKIT_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense;MER11A_dup797|chr13:77109706-77110805:+|1.4536776557466329|0.0433849586195212|5.07|151.0|57|2|anti-sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 409.1104431152344 2 408.76872 815.522887 0.19194 7.8459E-05 -0.77819 -0.0003181 -0.58625 -0.00023964 408.76811264193486 56.734 0.266 60.268 60.184 60.45 3.5333 41 23 2 0 0 0 0.72333 1 12197 12197 0.69038 0 1 135110 754 15781 459 460 1016 1016 0.10774696485316326 AKGKAKIT 8 Unmodified _AKGKAKIT_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense;MER11A_dup797|chr13:77109706-77110805:+|1.4536776557466329|0.0433849586195212|5.07|151.0|57|2|anti-sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 408.76872 815.522887 -0.059242 -2.4216E-05 -0.24174 -9.8818E-05 -0.30099 -0.00012303 408.76824722376597 56.589 0.27635 60.091 59.925 60.201 3.5014 -0.061064 0.00028712 NaN 0.69038 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 140780 755 15781 459 460 0.10774696485316326 AKGKAKIT 8 Unmodified _AKGKAKIT_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense;MER11A_dup797|chr13:77109706-77110805:+|1.4536776557466329|0.0433849586195212|5.07|151.0|57|2|anti-sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|45|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 408.76872 815.522887 0.0022024 9.0026E-07 -0.8955 -0.00036605 -0.8933 -0.00036515 408.7679656894892 56.555 0.23207 60.097 59.98 60.212 3.5427 -0.054656 -0.00024734 NaN 0.69038 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 150790 756 15781 459 460 0.10774696485316326 AKGLRHGA 8 Unmodified _AKGLRHGA_ 0 0 0 REV__HERVH-int_dup2098|chr5:76885744-76886587:-|3.269448946210359|0.005647067565466|9.18|149.0|10|2|sense REV__HERVH-int_dup2098|chr5:76885744-76886587:-|3.269448946210359|0.005647067565466|9.18|149.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.2406311035156 2 405.240661 808.46677 0.063978 2.5926E-05 -0.13308 -5.3931E-05 -0.069106 -2.8004E-05 405.2403973609041 92.366 0.045326 92.366 92.352 92.397 0 7 4 2 0 0 0 0.82752 1 22355 22355 2.3027 0 1 67749 + 757 23657 460 461 1017 1017 0.05487488368510185 AKGRGLLRKM 10 Unmodified _AKGRGLLRKM_ 0 0 0 ENST00000484545.1_1_4:1989621-1991459:-|nuORF;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF ENST00000484545.1_1_4:1989621-1991459:-|nuORF ENST00000484545.1_1_4:1989621-1991459:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 565.3526611328125 2 565.35296 1128.69137 0.63483 0.0003589 0.23828 0.00013471 0.87311 0.00049361 565.3527595197415 109.08 0.066307 112.61 112.58 112.65 3.5307 12 7 2 0 0 0 0.54078 1 26550 26550 6.7232 0.99131 1 2343000 758 5083 461 462 1018 1018 0.1321685512732529 AKGWRRTL 8 Unmodified _AKGWRRTL_ 0 0 0 MLT1D_dup14038|chr11:122669099-122669560:-|2.6802482303292217|0.0154212850301704|7.44|151.0|4|1|sense MLT1D_dup14038|chr11:122669099-122669560:-|2.6802482303292217|0.0154212850301704|7.44|151.0|4|1|sense MLT1D_dup14038|chr11:122669099-122669560:-|2.6802482303292217|0.0154212850301704|7.44|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 494.2965393066406 2 494.295968 986.577383 NaN NaN NaN NaN NaN NaN NaN 72.67 1 72.67 72.17 73.17 0 0 0 0 0.40625 1 16807 16807 2.3027 0 1 759 16332 462 463 1019 1019 0.08355708356748437 AKHKKLHTE 9 Unmodified _AKHKKLHTE_ 0 0 0 L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|26|2|sense L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|26|2|sense L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|26|2|sense MSMS UPN47_class_I_Rep_3 4 546.795166015625 2 546.31964 1090.62473 NaN NaN NaN NaN NaN NaN NaN 21.811 1 25.161 24.661 25.661 3.3496 0 0 0 0.4007 1 2504 2504 0.52476 0.12405 1 760 12307 463 464 1020 1020 0.08303942837073919 AKHKKVRT 8 Unmodified _AKHKKVRT_ 0 0 0 REV__ENSG00000163827|ENST00000395905|LRRC2 REV__ENSG00000163827|ENST00000395905|LRRC2 MSMS UPN46_class_I_Rep_3 1 484.3117980957031 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 94.128 1 94.128 93.628 94.628 0 0 0 0 0.40753 1 22831 22831 0.6015 0 1 + 761 20010 464 465 1021 1021 0.12404281390843153 AKHKVKQPGV 10 Unmodified _AKHKVKQPGV_ 0 0 0 REV__L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|35|2|sense REV__L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 546.3370361328125 2 546.337833 1090.66111 NaN NaN NaN NaN NaN NaN NaN 36.076 1 39.743 39.243 40.243 3.6667 0 0 0 0.53105 1 5927 5927 0.40072 0.40072 1 + 762 26283 465 466 1022 1022 0.11940819733808894 AKHMKDLE 8 Unmodified _AKHMKDLE_ 0 0 0 REV__MER51A_dup374|chr7:102072057-102072745:-|1.8089511924843684|0.0123814848812039|7.19|151.0|38|3|anti-sense REV__MER51A_dup374|chr7:102072057-102072745:-|1.8089511924843684|0.0123814848812039|7.19|151.0|38|3|anti-sense MSMS UPN48_class_I_Rep_2 6 485.77191162109375 2 486.252577 970.490601 NaN NaN NaN NaN NaN NaN NaN 21.82 1 25.466 24.966 25.966 3.6459 0 0 0 0.40643 1 2126 2126 2.0598 0 1 + 763 31392 466 467 1023 1023 0.004175410200105034 AKHPILRIYP 10 Unmodified _AKHPILRIYP_ 0 0 0 L1MB7_dup11329|chr9:126811934-126812892:-|2.449443321308514|0.0317695745099503|6.27|151.0|67|3|anti-sense L1MB7_dup11329|chr9:126811934-126812892:-|2.449443321308514|0.0317695745099503|6.27|151.0|67|3|anti-sense L1MB7_dup11329|chr9:126811934-126812892:-|2.449443321308514|0.0317695745099503|6.27|151.0|67|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 604.3671875 2 604.369133 1206.72371 0.4875 0.00029463 -2.1828 -0.0013192 -1.6953 -0.0010246 604.3678835803705 107.52 0.28896 111.2 110.99 111.28 3.6783 60 36 2 0 0 0 0.47413 1 25390 25390 13.906 0.86358 1 9212900 764 10681 467 468 1024 1024 0.12861965801971564 AKHPILRIYP 10 Unmodified _AKHPILRIYP_ 0 0 0 L1MB7_dup11329|chr9:126811934-126812892:-|2.449443321308514|0.0317695745099503|6.27|151.0|67|3|anti-sense L1MB7_dup11329|chr9:126811934-126812892:-|2.449443321308514|0.0317695745099503|6.27|151.0|67|3|anti-sense L1MB7_dup11329|chr9:126811934-126812892:-|2.449443321308514|0.0317695745099503|6.27|151.0|67|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 604.369133 1206.72371 0.54629 0.00033016 -2.9088 -0.001758 -2.3625 -0.0014279 604.3675000078941 107.51 0.29199 111.19 111.09 111.38 3.6813 -0.0017464 -0.00022453 NaN 13.906 68 37 3 NaN NaN NaN NaN 0 NaN NaN 0 10262000 765 10681 467 468 0.12861965801971564 AKHQFLRR 8 Unmodified _AKHQFLRR_ 0 0 0 ENST00000531279.5_1_6:133078868-133084533:-|nuORF ENST00000531279.5_1_6:133078868-133084533:-|nuORF ENST00000531279.5_1_6:133078868-133084533:-|nuORF MSMS UPN47_class_I_Rep_3 4 528.3137817382812 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.932 1 93.33 92.83 93.83 3.3976 0 0 0 0.40746 1 22547 22547 0.69038 0 1 766 7295 468 469 1025 1025 0.08970799622375125 AKIKGKFFI 9 Unmodified _AKIKGKFFI_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|70|3|sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|70|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 526.8386840820312 2 526.33677 1050.65899 0.31126 0.00016383 0.30534 0.00016071 0.6166 0.00032454 526.3372338081297 101.18 0.089279 104.68 104.64 104.73 3.5063 17 12 2 0 0 0 0.12444 1 24710 24710 2.0598 2.0598 1 102270 + 767 31488 469 470 1026 1026 0.13568390996010748 AKKARLQP 8 Unmodified _AKKARLQP_ 0 0 0 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS UPN48_class_I_Rep_2 6 456.3013000488281 2 456.292894 910.571235 NaN NaN NaN NaN NaN NaN NaN 46.002 1 49.76 49.26 50.26 3.7579 0 0 0 0.4044 1 8941 8941 4.756 2.1785 1 + 768 20077 470 471 1027 1027 0.11237190125223151 AKKGRLHK 8 Unmodified _AKKGRLHK_ 0 0 0 REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense MSMS UPN48_class_I_Rep_1 5 469.3055114746094 2 469.306336 936.598118 NaN NaN NaN NaN NaN NaN NaN 48.372 1 51.896 51.396 52.396 3.5239 0 0 0 0.40746 1 9662 9662 0.69038 0 1 + 769 27578 471 472 1028 1028 0.12728298736396937 AKKGRLHK 8 Unmodified _AKKGRLHK_ 0 0 0 REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense MSMS UPN48_class_I_Rep_1 5 469.3056335449219 2 469.306336 936.598118 NaN NaN NaN NaN NaN NaN NaN 48.601 1 52.125 51.625 52.625 3.5239 0 0 0 0.40746 1 9732 9732 0.69038 0 1 + 770 27578 471 472 1029 1029 0.12728298736396937 AKKGRLHK 8 Unmodified _AKKGRLHK_ 0 0 0 REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense MSMS UPN48_class_I_Rep_1 5 469.3052673339844 2 469.306336 936.598118 NaN NaN NaN NaN NaN NaN NaN 48.83 1 52.354 51.854 52.854 3.5239 0 0 0 0.40746 1 9803 9803 0.69038 0 1 + 771 27578 471 472 1030 1030 0.12728298736396937 AKKGRLHK 8 Unmodified _AKKGRLHK_ 0 0 0 REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 469.30517578125 2 469.306336 936.598118 NaN NaN NaN NaN NaN NaN NaN 48.277 1 52.013 51.513 52.513 3.7361 0 0 0 0.40746 1 9628 9628 0.69038 0 1 + 772 27578 471 472 1031 1031 0.12728298736396937 AKKGRLHK 8 Unmodified _AKKGRLHK_ 0 0 0 REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense REV__L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 469.3052978515625 2 469.306336 936.598118 NaN NaN NaN NaN NaN NaN NaN 48.429 1 52.146 51.646 52.646 3.7175 0 0 0 0.40746 1 9676 9676 0.69038 0 1 + 773 27578 471 472 1032 1032 0.12728298736396937 AKKHRLPH 8 Unmodified _AKKHRLPH_ 0 0 0 L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|126|3|sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|126|3|sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|126|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 493.2869567871094 2 493.80396 985.593367 -0.12134 -5.992E-05 -2.4332 -0.0012015 -2.5545 -0.0012614 493.8028954050753 14.953 0.10244 18.339 18.312 18.414 3.3864 13 10 2 0 0 0 0.72333 1 698 698 5.2307 0.90143 1 19649 774 13512 472 473 1033 1033 0.09999414593642086 AKKKASNGVGM 11 Unmodified _AKKKASNGVGM_ 0 0 0 ENST00000528081.5_1_14:73544165-73555113:+|nuORF ENST00000528081.5_1_14:73544165-73555113:+|nuORF ENST00000528081.5_1_14:73544165-73555113:+|nuORF MSMS UPN47_class_I_Rep_1 2 545.8037109375 2 545.805508 1089.59646 NaN NaN NaN NaN NaN NaN NaN 25.932 1 29.695 29.195 30.195 3.7624 0 0 0 0.38417 1 3635 3635 2.7352 0.43246 1 775 7275 473 474 1034 1034 0.055248768654792 AKKKILLFQLR 11 Unmodified _AKKKILLFQLR_ 0 0 0 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 MSMS UPN47_class_I_Rep_3 4 453.30517578125 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.77 1 121.19 120.69 121.69 3.4238 0 0 0 0.38417 1 29025 29025 0.094841 0 1 776 16767 474 475 1035 1035 0.23275331858394566 AKKKKKKKVK 10 Unmodified _AKKKKKKKVK_ 0 0 0 L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|9|1|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|9|1|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 40.565 1 44.07 43.57 44.57 3.5048 0 0 0 0.53105 1 7296 7296 0.13989 0.13989 1 777 10836 475 476 1036 1036 0.2778736654954628 AKKKKKKKVK 10 Unmodified _AKKKKKKKVK_ 0 0 0 L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|9|1|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|9|1|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 40.305 1 43.956 43.456 44.456 3.6509 0 0 0 0.53105 1 7151 7151 0.13989 0.13989 1 778 10836 475 476 1037 1037 0.2778736654954628 AKKKKKLCWH 10 Unmodified _AKKKKKLCWH_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|123|1|anti-sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|123|1|anti-sense MSMS UPN48_class_I_Rep_1 5 635.3704223632812 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 94.684 1 98.3 97.8 98.8 3.6167 0 0 0 0.53105 1 22789 22789 0.40072 0 1 + 779 23465 476 477 1038 1038 0.1303400119552407 AKKKKRKFAT 10 Unmodified _AKKKKRKFAT_ 0 0 0 REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|30|2|sense REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 603.3950805664062 2 603.395682 1204.77681 NaN NaN NaN NaN NaN NaN NaN 101.03 1 104.64 104.14 105.14 3.6084 0 0 0 0.53105 1 24392 24392 0.40072 0 1 + 780 26753 477 478 1039 1039 0.182613435846406 AKKLARKAALF 11 Unmodified _AKKLARKAALF_ 0 0 0 REV__nc|ENSG00000160949|Q96HA7-2|TONSL REV__nc|ENSG00000160949|Q96HA7-2|TONSL MSMS UPN47_class_I_Rep_2 3 406.2668151855469 3 406.267797 1215.78156 NaN NaN NaN NaN NaN NaN NaN 32.201 1 35.655 35.155 36.155 3.4547 0 0 0 0.38417 1 5548 5548 0.40827 0.24894 1 + 781 19897 478 479 1040 1040 0.18230227727394777 AKKLARKAALF 11 Unmodified _AKKLARKAALF_ 0 0 0 REV__nc|ENSG00000160949|Q96HA7-2|TONSL REV__nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-SECPEP UPN47_class_I_Rep_2 3 405.932373046875 3 406.267797 1215.78156 -1.0014 -0.00040685 -1.6087 -0.00065354 -2.6101 -0.0010604 406.2671434566261 34.274 0.12897 37.714 37.632 37.761 3.4398 14 9 2 0 0 0 22.551 1 6166 6166 0.45452 0.1855 1 87322 + 782 19897 478 479 1041 1041 0.18230227727394777 AKKLARKAALF 11 Unmodified _AKKLARKAALF_ 0 0 0 REV__nc|ENSG00000160949|Q96HA7-2|TONSL REV__nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MATCH UPN47_class_I_Rep_3 4 3 406.267797 1215.78156 -1.2318 -0.00050043 -2.3403 -0.00095078 -3.572 -0.0014512 406.2668733038913 34.612 0.11864 37.876 37.836 37.954 3.2639 0.08127 -0.00032246 NaN 0.45452 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 45081 + 783 19897 478 479 0.18230227727394777 AKKLEKDLI 9 Unmodified _AKKLEKDLI_ 0 0 0 ENSG00000154710|ENST00000284957|RABGEF1;nc|ENSG00000154710|Q9UJ41-4|RABGEF1;nc|ENSG00000154710|Q9UJ41-3|RABGEF1 ENSG00000154710|ENST00000284957|RABGEF1 ENSG00000154710|ENST00000284957|RABGEF1 MULTI-MSMS UPN48_class_I_Rep_3 7 529.3347778320312 2 529.334424 1056.6543 0.33949 0.0001797 0.0082745 4.38E-06 0.34776 0.00018408 529.3343299640475 53.337 0.73652 56.921 56.519 57.256 3.5836 93 51 2 0 0 0 0.43153 1 11187 11187 6.2058 0.9089 1 292910 784 3680 479 480 1042 1042 0.12823462062556246 AKKNMEHR 8 Unmodified _AKKNMEHR_ 0 0 0 ENST00000263915.7_1_2:165365032-165365322:-|nuORF ENST00000263915.7_1_2:165365032-165365322:-|nuORF ENST00000263915.7_1_2:165365032-165365322:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 507.8237609863281 2 507.269093 1012.52363 -0.28592 -0.00014504 1.5591 0.00079089 1.2732 0.00064585 507.2690921733825 14.204 0.079317 17.679 17.634 17.713 3.475 12 9 2 0 0 0 0.72333 1 508 508 2.0598 1.3694 1 14695 785 5984 480 481 1043 1043 0.01787167862721617 AKKQKHWY 8 Unmodified _AKKQKHWY_ 0 0 0 REV__L1MC1_dup9578|chr12:9678011-9678530:-|2.837198627806373|0.3801696001737567|2.9|151.0|10|2|sense REV__L1MC1_dup9578|chr12:9678011-9678530:-|2.837198627806373|0.3801696001737567|2.9|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 544.8035278320312 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 65.014 1 68.521 68.021 69.021 3.5077 0 0 0 0.40625 1 14659 14659 2.3027 0 1 + 786 26626 481 482 1044 1044 0.0524057515392542 AKKRATKQI 9 Unmodified _AKKRATKQI_ 0 0 0 REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|50|2|sense REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|50|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 522.337890625 2 522.337833 1042.66111 0.27933 0.0001459 -0.35212 -0.00018393 -0.072792 -3.8022E-05 522.3376129062668 107.87 0.098534 111.5 111.47 111.57 3.6313 10 6 2 0 0 0 0.47493 1 26052 26052 3.2813 0.97858 1 981230 + 787 24223 482 483 1045 1045 0.14148819733782148 AKKRATKQI 9 Unmodified _AKKRATKQI_ 0 0 0 REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|50|2|sense REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|50|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 522.337833 1042.66111 0.4204 0.00021959 -1.3586 -0.00070964 -0.93818 -0.00049005 522.3368770250665 107.86 0.057236 111.53 111.5 111.56 3.6724 0.0117 -0.0009151 NaN 3.2813 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 820550 + 788 24223 482 483 0.14148819733782148 AKKRATKQI 9 Unmodified _AKKRATKQI_ 0 0 0 REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|50|2|sense REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|50|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 522.337833 1042.66111 0.27933 0.0001459 -0.35212 -0.00018393 -0.072792 -3.8022E-05 522.3376129062668 107.87 0.098534 111.5 111.47 111.57 3.6313 -0.0117 0.00013631 NaN 3.2813 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 981230 + 789 24223 482 483 0.14148819733782148 AKKVLCALP 9 Unmodified _AKKVLCALP_ 0 0 0 L1MC1_dup10721|chr14:49808733-49809580:+|2.205494121108387|0.082233853382519|4.75|151.0|52|3|anti-sense L1MC1_dup10721|chr14:49808733-49809580:+|2.205494121108387|0.082233853382519|4.75|151.0|52|3|anti-sense L1MC1_dup10721|chr14:49808733-49809580:+|2.205494121108387|0.082233853382519|4.75|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 30.601 1 34.083 33.583 34.583 3.4821 0 0 0 0.39428 1 5067 5067 2.0598 1.2661 1 790 11081 483 484 1046 1046 0.10008482818807352 AKLFFKNEE 9 Unmodified _AKLFFKNEE_ 0 0 0 L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|9|1|sense L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|9|1|sense L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 563.2999267578125 2 563.300581 1124.58661 0.41029 0.00023112 -0.064463 -3.6312E-05 0.34583 0.00019481 563.3006598573244 73.062 0.48994 73.062 72.877 73.367 0 75 51 2 0 0 0 0.48846 1 16880 16880 1.8442 0.19162 1 268800 791 8784 484 485 1047 1047 0.0293001213176467 AKLFKKKKK 9 Unmodified _AKLFKKKKK_ 0 0 0 REV__L1MA5A_dup318|chr2:23720595-23723008:+|2.2901550672102755|0.156653857382049|3.87|151.0|16|1|sense REV__L1MA5A_dup318|chr2:23720595-23723008:+|2.2901550672102755|0.156653857382049|3.87|151.0|16|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 559.826171875 2 559.892244 1117.76993 0.43564 0.00024391 0.044983 2.5185E-05 0.48063 0.0002691 559.8944494604124 109.34 0.091576 109.34 109.29 109.38 0 12 9 2 0 0 0 0.12527 1 26845 26845 0.6015 0 1 1242500 + 792 25421 485 486 1048 1048 0.21576030704068216 AKLRKQQVY 9 Unmodified _AKLRKQQVY_ 0 0 0 REV__ENST00000472767.5_1_2:42922919-42924972:+|nuORF REV__ENST00000472767.5_1_2:42922919-42924972:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.342529296875 2 567.343115 1132.67168 NaN NaN NaN NaN NaN NaN NaN 37.427 1 41.092 40.592 41.592 3.6652 0 0 0 0.39518 1 7100 7100 1.8442 0 1 + 793 17706 486 487 1049 1049 0.11064802388250428 AKLSRKRKP 9 Unmodified _AKLSRKRKP_ 0 0 0 REV__nc|ENSG00000124493|Q14833-3|GRM4 REV__nc|ENSG00000124493|Q14833-3|GRM4 MSMS UPN47_class_I_Rep_2 3 542.3615112304688 2 542.359099 1082.70365 NaN NaN NaN NaN NaN NaN NaN 113.35 1 116.87 116.37 117.37 3.5171 0 0 0 0.40038 1 27569 27569 0.6015 0 1 + 794 18809 487 488 1050 1050 0.16560214862056455 AKLYSILWT 9 Unmodified _AKLYSILWT_ 0 0 0 L1MB7_dup7209|chr5:180031594-180032347:-|1.6827654995066728|0.0089708594369993|7.55|151.0|52|3|anti-sense L1MB7_dup7209|chr5:180031594-180032347:-|1.6827654995066728|0.0089708594369993|7.55|151.0|52|3|anti-sense L1MB7_dup7209|chr5:180031594-180032347:-|1.6827654995066728|0.0089708594369993|7.55|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_2 6 548.0496826171875 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 32.713 1 36.362 35.862 36.862 3.6497 0 0 0 0.38639 1 5083 5083 3.9444 0.66309 1 795 10869 488 489 1051 1051 0.07411790516812289 AKMSMRLAIL 10 Unmodified _AKMSMRLAIL_ 0 0 0 REV__Tigger17a_dup1026|chr7:140810674-140811213:+|1.363226864449679|0.0293211466766521|5.54|150.0|33|3|anti-sense REV__Tigger17a_dup1026|chr7:140810674-140811213:+|1.363226864449679|0.0293211466766521|5.54|150.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.3309936523438 2 567.330304 1132.64606 0.41842 0.00023738 -0.29215 -0.00016574 0.12628 7.1641E-05 567.3300186543671 81.645 0.89778 85.158 84.718 85.615 3.5122 160 100 2 0 0 0 0.56354 1 20323 20323 1.3295 1.3295 1 224520 + 796 32599 489 490 1052 1052 0.08503868549951221 AKNGVPNFLK 10 Unmodified _AKNGVPNFLK_ 0 0 0 ENST00000417982.6_1_17:53851072-53853458:+|nuORF;nc|ENSG00000141179|Q9UKL6-2|PCTP;ENSG00000141179|ENST00000268896|PCTP ENST00000417982.6_1_17:53851072-53853458:+|nuORF ENST00000417982.6_1_17:53851072-53853458:+|nuORF MSMS UPN48_class_I_Rep_3 7 544.3160400390625 2 544.316566 1086.61858 NaN NaN NaN NaN NaN NaN NaN 48.105 1 51.738 51.238 52.238 3.6339 0 0 0 0.53105 1 9513 9513 8.7454 1.1365 1 797 3207 490 491 1053 1053 0.07873424605554646 AKNVHTHRV 9 Unmodified _AKNVHTHRV_ 0 0 0 ENST00000528491.5_1_10:28821838-28824858:+|nuORF;ENST00000532233.5_1_10:28821838-28826589:+|nuORF;nc|ENSG00000095787|Q9BTA9-3|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC ENST00000528491.5_1_10:28821838-28824858:+|nuORF ENST00000528491.5_1_10:28821838-28824858:+|nuORF MSMS UPN46_class_I_Rep_3 1 531.30029296875 2 531.301781 1060.58901 NaN NaN NaN NaN NaN NaN NaN 100.72 1 100.72 100.22 101.22 0 0 0 0 0.39598 1 24560 24560 1.6526 0.85899 1 798 1419 491 492 1054 1054 0.06113905380084361 AKPARQTK 8 Unmodified _AKPARQTK_ 0 0 0 REV__L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|236|3|anti-sense REV__L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|236|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.27447509765625 2 450.274701 898.534849 0.047019 2.1172E-05 -0.11045 -4.9733E-05 -0.063432 -2.8562E-05 450.274643132974 72.677 0.74698 76.15 75.798 76.545 3.4732 78 57 2 0 0 0 0.82752 1 17148 17148 2.0598 0.21551 1 104750 + 799 30500 492 493 1055 1055 0.08152313228515595 AKPFKMMF 8 Unmodified _AKPFKMMF_ 0 0 0 REV__L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|78|2|sense REV__L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|78|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.2589416503906 2 500.261359 998.508165 -0.45369 -0.00022697 0.7037 0.00035204 0.25001 0.00012507 500.2592561396514 26.227 0.18368 29.575 29.495 29.679 3.3478 24 17 2 0 0 0 0.82752 1 3823 3823 0.69038 0 1 34787 + 800 29196 493 494 1056 1056 0.008851650213273388 AKPIKIKL 8 Unmodified _AKPIKIKL_ 0 0 0 ENSG00000171467|ENST00000361428|ZNF318 ENSG00000171467|ENST00000361428|ZNF318 ENSG00000171467|ENST00000361428|ZNF318 MSMS UPN46_class_I_Rep_3 1 455.8255920410156 2 455.826038 909.637523 NaN NaN NaN NaN NaN NaN NaN 101.83 1 101.83 101.33 102.33 0 0 0 0 0.40746 1 24844 24844 0.69038 0 1 801 4519 494 495 1057 1057 0.1790900596724896 AKPKIFIIWP 10 Unmodified _AKPKIFIIWP_ 0 0 0 MER58C_dup46|chr1:45638961-45639148:+|1.0199725552750492|0.1270848349311475|3.0|151.0|9|3|sense MER58C_dup46|chr1:45638961-45639148:+|1.0199725552750492|0.1270848349311475|3.0|151.0|9|3|sense MER58C_dup46|chr1:45638961-45639148:+|1.0199725552750492|0.1270848349311475|3.0|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 404.9233703613281 3 404.921627 1211.74305 NaN NaN NaN NaN NaN NaN NaN 36.661 1 40.324 39.824 40.824 3.663 0 0 0 0.53105 1 6091 6091 0.69767 0.19171 1 802 16142 495 496 1058 1058 0.14564922092881716 AKQKDPLTNI 10 Unmodified _AKQKDPLTNI_ 0 0 0 REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|38|3|sense REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|38|3|sense MSMS UPN48_class_I_Rep_1 5 564.32421875 2 564.324588 1126.63462 NaN NaN NaN NaN NaN NaN NaN 45.845 1 49.361 48.861 49.861 3.5162 0 0 0 0.53105 1 8885 8885 1.3295 0.5359 1 + 803 25019 496 497 1059 1059 0.0763708605179545 AKQPLLIIG 9 Unmodified _AKQPLLIIG_ 0 0 0 ENST00000383779.8_1_3:15614715-15637929:-|nuORF;nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1 ENST00000383779.8_1_3:15614715-15637929:-|nuORF ENST00000383779.8_1_3:15614715-15637929:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.8153381347656 2 476.813128 951.611703 NaN NaN NaN NaN NaN NaN NaN 19.715 1 19.715 19.215 20.215 0 0 0 0 0.4007 1 1926 1926 0.52476 0 1 804 2706 497 498 1060 1060 0.13396111725000992 AKQRHNIT 8 Unmodified _AKQRHNIT_ 0 0 0 ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB ENST00000538021.5_2_11:72004413-72018253:-|nuORF ENST00000538021.5_2_11:72004413-72018253:-|nuORF MSMS UPN48_class_I_Rep_3 7 484.2640380859375 2 484.275232 966.535912 NaN NaN NaN NaN NaN NaN NaN 43.642 1 47.28 46.78 47.78 3.6385 0 0 0 0.4044 1 8146 8146 4.756 0 1 805 3920 498 499 1061 1061 0.051305275974073083 AKQTPGHY 8 Unmodified _AKQTPGHY_ 0 0 0 nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6 nc|ENSG00000188803|Q6ZSJ9-2|SHISA6 nc|ENSG00000188803|Q6ZSJ9-2|SHISA6 MSMS UPN47_class_I_Rep_2 3 451.2169189453125 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 83.709 1 87.12 86.62 87.62 3.4116 0 0 0 0.40581 1 20874 20874 2.8892 0 1 806 5253 499 500 1062 1062 -0.008839414508543086 AKRCCLLQEL 10 Unmodified _AKRCCLLQEL_ 0 0 0 HERVK9-int_dup609|chr19:21412530-21417699:-|2.6696971222682127|0.2791161318887036|3.26|150.0|248|2|anti-sense HERVK9-int_dup609|chr19:21412530-21417699:-|2.6696971222682127|0.2791161318887036|3.26|150.0|248|2|anti-sense HERVK9-int_dup609|chr19:21412530-21417699:-|2.6696971222682127|0.2791161318887036|3.26|150.0|248|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.3176879882812 2 588.815018 1175.61548 0.41052 0.00024172 2.1367 0.0012581 2.5472 0.0014998 588.8165552425122 60.609 0.087872 63.991 63.957 64.044 3.3815 9 7 2 0 0 0 0.56118 1 14155 14155 2.9952 0.26005 1 65719 807 8328 500 501 1063 1063 0.03470090164910289 AKRELGLR 8 Unmodified _AKRELGLR_ 0 0 0 REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MSMS UPN47_class_I_Rep_1 2 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 44.382 1 48.077 47.577 48.577 3.6951 0 0 0 0.40643 1 9222 9222 2.0598 0 1 + 808 18627 501 502 1064 1064 0.1039228863688777 AKRFCQYVVK 10 Unmodified _AKRFCQYVVK_ 0 0 0 nc|ENSG00000165682|Q9P126-2|CLEC1B;ENSG00000165682|ENST00000298527|CLEC1B nc|ENSG00000165682|Q9P126-2|CLEC1B nc|ENSG00000165682|Q9P126-2|CLEC1B MSMS UPN46_class_I_Rep_3 1 621.3465576171875 2 621.3448 1240.67505 NaN NaN NaN NaN NaN NaN NaN 50.055 1 50.055 49.555 50.555 0 0 0 0 0.53105 1 10557 10557 1.4819 0.15237 1 809 4197 502 503 1065 1065 0.06433729170566949 AKRFHHHQ 8 Unmodified _AKRFHHHQ_ 0 0 0 L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|46|2|sense L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|46|2|sense L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 530.734130859375 2 530.781016 1059.54748 NaN NaN NaN NaN NaN NaN NaN 12.685 1 12.685 12.185 13.185 0 0 0 0 0.40746 1 176 176 0.69038 0 1 810 14322 503 504 1066 1066 0.020087694113954058 AKRKKPFPFH 10 Unmodified _AKRKKPFPFH_ 0 0 0 REV__ENST00000564272.1_1_16:46654768-46655256:-|nuORF REV__ENST00000564272.1_1_16:46654768-46655256:-|nuORF MSMS UPN46_class_I_Rep_3 1 628.3744506835938 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 45.029 1 45.029 44.529 45.529 0 0 0 0 0.53105 1 9119 9119 0.40072 0 1 + 811 23046 504 505 1067 1067 0.11776787896133101 AKRKKPTTY 9 Unmodified _AKRKKPTTY_ 0 0 0 REV__ENSG00000108256|ENST00000225388|NUFIP2 REV__ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MSMS UPN48_class_I_Rep_3 7 546.8302001953125 2 546.82984 1091.64513 0.38167 0.00020871 -0.34346 -0.00018782 0.03821 2.0895E-05 546.8296180930956 45.894 0.86408 49.531 49.127 49.991 3.6369 89 61 2 0 0 0 0.45688 1 8808 8808 4.756 1.4747 1 163750 + 812 18374 505 506 1068 1068 0.10297113496881138 AKRKTILIQHL 11 Unmodified _AKRKTILIQHL_ 0 0 0 REV__L1MC4_dup8237|chr5:137927141-137927720:+|2.267424807598861|0.0585760607376013|5.27|150.0|19|3|sense REV__L1MC4_dup8237|chr5:137927141-137927720:+|2.267424807598861|0.0585760607376013|5.27|150.0|19|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 441.2800598144531 3 440.95399 1319.84014 0.14789 6.5212E-05 -3.721 -0.0016408 -3.5731 -0.0015756 440.9521695970573 65.974 0.1171 69.46 69.409 69.526 3.4866 9 7 2 0 0 0 22.551 1 15056 15056 1.2148 0.51716 1 35475 + 813 26944 506 507 1069 1069 0.19301284301900523 AKRQRAHW 8 Unmodified _AKRQRAHW_ 0 0 0 REV__L1MC4_dup10059|chr7:5414712-5415038:-|1.2209982111915454|0.0194243656633423|5.97|151.0|1|1|sense REV__L1MC4_dup10059|chr7:5414712-5415038:-|1.2209982111915454|0.0194243656633423|5.97|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 526.7982177734375 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 19.142 1 22.68 22.18 23.18 3.5378 0 0 0 0.40746 1 1401 1401 0.69038 0 1 + 814 26797 507 508 1070 1070 0.05505342445508177 AKSNLTTF 8 Unmodified _AKSNLTTF_ 0 0 0 L1MB7_dup13937|chr10:75797382-75798419:-|1.4834530424222023|0.0362348126521803|5.36|148.0|64|2|anti-sense L1MB7_dup13937|chr10:75797382-75798419:-|1.4834530424222023|0.0362348126521803|5.36|148.0|64|2|anti-sense L1MB7_dup13937|chr10:75797382-75798419:-|1.4834530424222023|0.0362348126521803|5.36|148.0|64|2|anti-sense MSMS UPN47_class_I_Rep_1 2 441.2474365234375 2 441.239993 880.465432 NaN NaN NaN NaN NaN NaN NaN 108.78 1 112.42 111.92 112.92 3.6355 0 0 0 0.40364 1 26773 26773 5.7604 0.52976 1 815 10709 508 509 1071 1071 0.020418094890828797 AKSNQYPNH 9 Unmodified _AKSNQYPNH_ 0 0 0 REV__L1MB4_dup2953|chr6:36080237-36082404:-|11.187455828972142|0.3208331758077001|5.12|151.0|9|1|sense REV__L1MB4_dup2953|chr6:36080237-36082404:-|11.187455828972142|0.3208331758077001|5.12|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 529.7553100585938 2 529.75433 1057.49411 NaN NaN NaN NaN NaN NaN NaN 29.097 1 32.59 32.09 33.09 3.4923 0 0 0 0.38784 1 4611 4611 3.5965 0.60125 1 + 816 25959 509 510 1072 1072 -0.03234072881764405 AKTVNLIRRF 10 Unmodified _AKTVNLIRRF_ 0 0 0 REV__ENST00000525353.5_1_11:85361339-85366664:+|nuORF REV__ENST00000525353.5_1_11:85361339-85366664:+|nuORF MSMS UPN46_class_I_Rep_3 1 609.379638671875 2 609.377489 1216.74043 NaN NaN NaN NaN NaN NaN NaN 109.22 1 109.22 108.72 109.72 0 0 0 0 0.53105 1 26789 26789 5.7319 1.7875 1 + 817 20397 510 511 1073 1073 0.14072466687935048 AKVAKPTPGRR 11 Unmodified _AKVAKPTPGRR_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS UPN46_class_I_Rep_3 1 590.8667602539062 2 590.867289 1179.72002 0.55029 0.00032515 -1.6364 -0.0009669 -1.0861 -0.00064175 590.8662812508708 99.233 0.12706 99.233 99.173 99.3 0 34 11 4 0 0 0 0.30462 1 24183 24183 15.248 3.7538 1 8276600 + 818 18052 511 512 1074 1074 0.13735296028107769 AKVFSAFITVL 11 Unmodified _AKVFSAFITVL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS UPN47_class_I_Rep_2 3 598.8599853515625 2 598.357899 1194.70125 0.51612 0.00030882 -0.52673 -0.00031517 -0.010605 -6.3457E-06 598.3574845554384 52.707 0.33289 56.04 55.902 56.235 3.3332 36 25 2 0 0 0 0.59712 1 11776 11776 5.2969 0.96765 1 175910 819 1409 512 513 1075 1075 0.11168321613695298 AKVKPQKVKP 10 Unmodified _AKVKPQKVKP_ 0 0 0 REV__nc|ENSG00000060749|Q2KHR3-2|QSER1 REV__nc|ENSG00000060749|Q2KHR3-2|QSER1 MSMS UPN47_class_I_Rep_2 3 561.8704223632812 2 561.871508 1121.72846 NaN NaN NaN NaN NaN NaN NaN 108.25 1 111.79 111.29 112.29 3.5333 0 0 0 0.53105 1 26238 26238 6.7232 2.3939 1 + 820 17725 513 514 1076 1076 0.1724684994474046 AKWKCPID 8 Unmodified _AKWKCPID_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|18|1|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 480.7622985839844 2 480.752213 959.489873 NaN NaN NaN NaN NaN NaN NaN 42.988 1 42.988 42.488 43.488 0 0 0 0 0.40404 1 8551 8551 5.2307 0 1 + 821 24094 514 515 1077 1077 0.00850746370952038 AKYAQNGQLF 10 Unmodified _AKYAQNGQLF_ 0 0 0 nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|5|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|7|intron nc|ENSG00000198265|P42694-2|HELZ nc|ENSG00000198265|P42694-2|HELZ MULTI-MSMS UPN48_class_I_Rep_2 6 570.2957153320312 2 570.29583 1138.57711 0.5777 0.00032946 -0.31642 -0.00018045 0.26128 0.00014901 570.2954734090486 58.295 0.96887 61.794 61.403 62.372 3.4987 148 56 4 0 0 0 0.51565 1 12819 12819 10.074 0.6908 1 685980 822 5425 515 516 1078 1078 0.013362438462309001 AKYGTYRRW 9 Unmodified _AKYGTYRRW_ 0 0 0 L1MB3_dup2261|chr2:128297857-128298838:+|1.0130819055403697|0.0368735000465115|4.78|151.0|20|2|sense L1MB3_dup2261|chr2:128297857-128298838:+|1.0130819055403697|0.0368735000465115|4.78|151.0|20|2|sense L1MB3_dup2261|chr2:128297857-128298838:+|1.0130819055403697|0.0368735000465115|4.78|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 600.8162231445312 2 600.817264 1199.61998 NaN NaN NaN NaN NaN NaN NaN 58.691 1 61.857 61.357 62.357 3.1658 0 0 0 0.38784 1 13657 13657 3.5965 0.60125 1 823 10400 516 517 1079 1079 0.028150586943183953 AKYMSGKKVVS 11 Unmodified _AKYMSGKKVVS_ 0 0 0 L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|16|1|sense;L1ME1_dup16315|chr9:41370474-41371896:-|1.5423975226110502|0.0438645829600262|5.14|150.0|16|1|sense;L1ME1_dup16304|chr9:40093583-40095005:+|2.530815700881512|0.3322656576773851|2.93|151.0|16|1|sense L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|16|1|sense L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 599.8024291992188 2 599.336641 1196.65873 NaN NaN NaN NaN NaN NaN NaN 74.044 1 77.525 77.025 78.025 3.4812 0 0 0 0.38417 1 17484 17484 2.4985 0 1 824 12245 517 518 1080 1080 0.0682660321383537 ALAAALHYAL 10 Unmodified _ALAAALHYAL_ 0 0 0 ENST00000394361.8_1_16:57596005-57608989:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5 ENST00000394361.8_1_16:57596005-57608989:+|nuORF ENST00000394361.8_1_16:57596005-57608989:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 507.2928466796875 2 507.292559 1012.57057 0.20544 0.00010422 -0.29493 -0.00014962 -0.089494 -4.54E-05 507.29230438673454 61.763 0.62902 64.929 64.781 65.41 3.1667 62 45 2 0 0 0 0.49259 1 14563 14563 12.532 1.7076 1 144350 825 3844 518 519 1081 1081 0.06478350685495116 ALAAPMSRSP 10 Unmodified _ALAAPMSRSP_ 0 0 0 ENSG00000221900|ENST00000408890|POM121L12 ENSG00000221900|ENST00000408890|POM121L12 ENSG00000221900|ENST00000408890|POM121L12 MSMS UPN48_class_I_Rep_3 7 500.7656555175781 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 73.628 1 77.179 76.679 77.679 3.5505 0 0 0 0.53105 1 17237 17237 1.4819 0.68827 1 826 5646 519 520 1082 1082 0.017372299113503686 ALAAPSKLTFA 11 Unmodified _ALAAPSKLTFA_ 0 0 0 REV__Tigger1_dup10864|chr17:46123392-46124117:+|1.6610864895530373|0.0310225097315292|5.74|151.0|37|2|anti-sense REV__Tigger1_dup10864|chr17:46123392-46124117:+|1.6610864895530373|0.0310225097315292|5.74|151.0|37|2|anti-sense MSMS UPN46_class_I_Rep_3 1 545.3168334960938 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 81.828 1 81.828 81.328 82.328 0 0 0 0 0.38417 1 19347 19347 1.1933 0.39971 1 + 827 32340 520 521 1083 1083 0.08222889028456848 ALAAPVRN 8 Unmodified _ALAAPVRN_ 0 0 0 REV__ENST00000373034.8_1_X:99664249-99664408:-|nuORF REV__ENST00000373034.8_1_X:99664249-99664408:-|nuORF MSMS UPN47_class_I_Rep_1 2 406.241455078125 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 55.094 1 58.596 58.096 59.096 3.5014 0 0 0 0.39167 1 12479 12479 11.114 1.767 1 + 828 21983 521 522 1084 1084 0.058369527914123864 ALAAVSLSEE 10 Unmodified _ALAAVSLSEE_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|57|1|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.2618408203125 2 495.261122 988.507691 NaN NaN NaN NaN NaN NaN NaN 100.16 1 104.01 103.51 104.51 3.8537 0 0 0 0.53105 1 23718 23718 3.5965 0 1 + 829 32476 522 523 1085 1085 0.012977401068042127 ALADFTTSLL 10 Unmodified _ALADFTTSLL_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS UPN48_class_I_Rep_2 6 526.2872924804688 2 526.28714 1050.55973 0.44628 0.00023487 -0.62496 -0.00032891 -0.17868 -9.4037E-05 526.2868375111236 62.813 0.64199 66.287 65.998 66.64 3.4738 55 45 2 0 0 0 0.54078 1 14046 14046 6.7232 0.36906 1 224350 830 4863 523 524 1086 1086 0.03646903520575506 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS UPN46_class_I_Rep_3 1 450.7607727050781 2 450.761092 899.507631 0.053694 2.4203E-05 -0.38708 -0.00017448 -0.33338 -0.00015028 450.7607622357579 35.663 1.0776 35.663 35.269 36.346 0 175 79 3 0 0 0 0.0051925 2 6547 6503;6547 96.367 44.098 1 799470 831 1495 524 525 1087;1088 1088 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS UPN47_class_I_Rep_1 2 450.76080322265625 2 450.761092 899.507631 -0.37873 -0.00017072 -0.27853 -0.00012555 -0.65727 -0.00029627 450.76086125087687 31.487 0.58919 35.216 34.981 35.57 3.7293 65 40 2 0 0 0 0.21414 2 5271 5244;5271 19.362 4.5237 1 107760 832 1495 524 525 1089;1090 1090 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.7604675292969 2 450.761092 899.507631 -0.55096 -0.00024835 0.14185 6.3939E-05 -0.40912 -0.00018441 450.7609798027381 31.734 0.64462 35.203 34.802 35.447 3.4691 80 49 2 0 0 0 0.19147 2 5387 5343;5387 21.537 5.7319 1 102080 833 1495 524 525 1091;1092 1092 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS UPN47_class_I_Rep_3 4 450.7606506347656 2 450.761092 899.507631 -0.83502 -0.00037639 0.38985 0.00017573 -0.44516 -0.00020066 450.7610105649418 31.901 0.75848 35.2 34.78 35.538 3.2991 91 59 2 0 0 0 0.15547 2 5495 5495;5535 24.991 7.8781 1 90195 834 1495 524 525 1093;1094 1093 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 450.761092 899.507631 0.069345 3.1258E-05 -1.1993 -0.0005406 -1.13 -0.00050934 450.7602838608608 32.111 0.14893 35.638 35.513 35.661 3.5266 -0.01233 -0.00072574 NaN 96.367 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 42371 835 1495 524 525 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 450.761092 899.507631 0.065759 2.9642E-05 -0.84966 -0.00038299 -0.7839 -0.00035335 450.7599934945495 31.191 0.10706 34.893 34.817 34.925 3.7015 -0.23533 -0.00079418 NaN 24.991 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 37997 836 1495 524 525 0.053857848974644185 ALAEIAKAEL 10 Unmodified _ALAEIAKAEL_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MSMS UPN47_class_I_Rep_3 4 514.83935546875 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 52.439 1 55.645 55.145 56.145 3.2055 0 0 0 0.53105 1 11755 11755 27.088 10.522 1 837 2188 525 526 1095 1095 0.0786689627452688 ALAHRHPV 8 Unmodified _ALAHRHPV_ 0 0 0 REV__ENST00000368096.5_1_1:159888220-159888481:-|nuORF REV__ENST00000368096.5_1_1:159888220-159888481:-|nuORF MSMS UPN46_class_I_Rep_3 1 450.7603759765625 2 450.761761 899.508969 NaN NaN NaN NaN NaN NaN NaN 36.639 1 36.639 36.139 37.139 0 0 0 0 0.39819 1 6814 6814 8.5933 1.8701 1 + 838 21938 526 527 1096 1096 0.055194637768863686 ALAKKIKRF 9 Unmodified _ALAKKIKRF_ 0 0 0 REV__Kanga1a_dup65|chr1:234409488-234409536:-|1.2078185034412836|0.4435807016618276|1.45|151.0|3|3|sense REV__Kanga1a_dup65|chr1:234409488-234409536:-|1.2078185034412836|0.4435807016618276|1.45|151.0|3|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 537.3796997070312 2 537.860944 1073.70733 0.57949 0.00031169 -0.34664 -0.00018644 0.23285 0.00012524 537.861033430641 108.18 0.088974 111.71 111.63 111.72 3.5333 9 8 2 0 0 0 0.12532 1 26193 26193 0.52476 0 1 641980 + 839 23991 527 528 1097 1097 0.17342884635877454 ALAKKRGAP 9 Unmodified _ALAKKRGAP_ 0 0 0 REV__Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|79|1|anti-sense REV__Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|79|1|anti-sense MSMS UPN48_class_I_Rep_1 5 456.30078125 2 456.292894 910.571235 NaN NaN NaN NaN NaN NaN NaN 45.951 1 49.467 48.967 49.967 3.5162 0 0 0 0.38639 1 8918 8918 3.9444 0 1 + 840 17377 528 529 1098 1098 0.11237190125223151 ALALLFVWN 9 Unmodified _ALALLFVWN_ 0 0 0 REV__L1MB4_dup3408|chr7:72904104-72904700:-|1.4477816700295538|0.1234863075272755|3.55|151.0|5|2|sense REV__L1MB4_dup3408|chr7:72904104-72904700:-|1.4477816700295538|0.1234863075272755|3.55|151.0|5|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.6785888671875 2 523.805303 1045.59605 0.31582 0.00016543 0.018837 9.8667E-06 0.33466 0.0001753 523.8052956657681 81.016 0.88889 81.016 80.487 81.375 0 115 94 2 0 0 0 0.48414 1 19146 19146 2.3027 0.4585 1 282880 + 841 25964 529 530 1099 1099 0.07507825207949281 ALAPGQGQKNQ 11 Unmodified _ALAPGQGQKNQ_ 0 0 0 REV__ENST00000580878.1_1_19:40741997-40745051:-|nuORF REV__ENST00000580878.1_1_19:40741997-40745051:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 556.2985229492188 2 556.296362 1110.57817 0.40171 0.00022347 2.917 0.0016227 3.3188 0.0018462 556.2982167903051 102.1 0.073463 105.88 105.83 105.9 3.776 16 10 2 0 0 0 0.65271 1 24125 24125 2.9952 0.93549 1 87440 + 842 22580 530 531 1100 1100 0.027304582151373324 ALAPRYLP 8 Unmodified _ALAPRYLP_ 0 0 0 ENST00000584789.1_1_17:56603775-56609324:-|nuORF;ENST00000580796.5_1_17:56603775-56604561:-|nuORF;ENST00000585170.1_1_17:56603775-56604489:-|nuORF;ENST00000583273.5_1_17:56603775-56606703:-|nuORF ENST00000584789.1_1_17:56603775-56609324:-|nuORF ENST00000584789.1_1_17:56603775-56609324:-|nuORF MSMS UPN46_class_I_Rep_3 1 450.7606506347656 2 450.76872 899.522887 NaN NaN NaN NaN NaN NaN NaN 35.477 1 35.477 34.977 35.977 0 0 0 0 0.39167 1 6464 6464 11.114 1.767 1 843 7553 531 532 1101 1101 0.06910696485306289 ALAQGAERV 9 Unmodified _ALAQGAERV_ 0 0 0 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 MULTI-MSMS UPN47_class_I_Rep_1 2 457.75592041015625 2 457.756341 913.498129 -0.38834 -0.00017776 -0.056384 -2.581E-05 -0.44472 -0.00020357 457.7562359369764 24.786 0.71689 28.536 28.234 28.951 3.7495 116 60 4 0 0 0 0.079935 3 3255 3255;3293;3334 38.615 8.7742 1 233920 844 4748 532 533 1102;1103;1104 1102 0.03792016611953386 ALAQGAERV 9 Unmodified _ALAQGAERV_ 0 0 0 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 MULTI-MSMS UPN47_class_I_Rep_2 3 457.75604248046875 2 457.756341 913.498129 -0.47133 -0.00021575 0.18574 8.5023E-05 -0.28559 -0.00013073 457.7562286078719 24.924 0.70379 28.407 28.119 28.822 3.483 132 61 3 0 0 0 0.079935 3 3392 3355;3392;3432 38.615 8.7742 1 207490 845 4748 532 533 1105;1106;1107 1106 0.03792016611953386 ALAQGAERV 9 Unmodified _ALAQGAERV_ 0 0 0 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 MULTI-MSMS UPN47_class_I_Rep_3 4 457.755859375 2 457.756341 913.498129 -0.86007 -0.0003937 0.50036 0.00022904 -0.35971 -0.00016466 457.7563562003421 25.114 0.78248 28.464 28.188 28.971 3.3509 120 62 3 0 0 0 0.052941 1 3496 3496 47.732 3.9596 1 161670 846 4748 532 533 1108 1108 0.03792016611953386 ALAQGAERV 9 Unmodified _ALAQGAERV_ 0 0 0 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 457.756341 913.498129 -0.47133 -0.00021575 0.18574 8.5023E-05 -0.28559 -0.00013073 457.7562286078719 24.924 0.70379 28.407 28.119 28.822 3.483 -0.062097 -7.0854E-05 NaN 47.732 132 61 3 NaN NaN NaN NaN 0 NaN NaN 0 207490 847 4748 532 533 0.03792016611953386 ALAQGAERV 9 Unmodified _ALAQGAERV_ 0 0 0 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 457.756341 913.498129 -0.86007 -0.0003937 0.50036 0.00022904 -0.35971 -0.00016466 457.7563562003421 25.114 0.78248 28.464 28.188 28.971 3.3509 -0.0046563 0.00021719 NaN 47.732 120 62 3 NaN NaN NaN NaN 0 NaN NaN 0 161670 848 4748 532 533 0.03792016611953386 ALATLLVAGH 10 Unmodified _ALATLLVAGH_ 0 0 0 REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense MSMS UPN46_class_I_Rep_3 1 483.2927551269531 2 483.292559 964.570566 NaN NaN NaN NaN NaN NaN NaN 58.33 1 58.33 57.83 58.83 0 0 0 0 0.53105 1 12832 12832 57.471 1.2943 1 + 849 28563 533 534 1109 1109 0.08686350685502475 ALATLLVAGH 10 Unmodified _ALATLLVAGH_ 0 0 0 REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.2931213378906 2 483.292559 964.570566 0.036188 1.749E-05 -0.20873 -0.00010088 -0.17254 -8.3387E-05 483.29241339761626 51.787 0.64847 55.38 55.013 55.662 3.5933 49 37 2 0 0 0 0.23621 1 11440 11440 39.957 5.5556 1 121090 + 850 28563 533 534 1110 1110 0.08686350685502475 ALATLLVAGH 10 Unmodified _ALATLLVAGH_ 0 0 0 REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.2933349609375 2 483.292559 964.570566 0.28092 0.00013577 -0.74191 -0.00035856 -0.46099 -0.00022279 483.29208167537354 52.071 0.48105 55.404 55.15 55.631 3.3332 42 28 2 0 0 0 0.38932 1 11564 11564 20.454 2.3073 1 104880 + 851 28563 533 534 1111 1111 0.08686350685502475 ALATLLVAGH 10 Unmodified _ALATLLVAGH_ 0 0 0 REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.2913818359375 2 483.292559 964.570566 0.19191 9.275E-05 -1.0615 -0.00051303 -0.86963 -0.00042028 483.2919541881273 52.325 0.47572 55.53 55.171 55.647 3.2055 48 31 2 0 0 0 0.21144 2 11734 11682;11734 48.346 6.5062 1 132670 + 852 28563 533 534 1112;1113 1113 0.08686350685502475 ALAYAAIAVT 10 Unmodified _ALAYAAIAVT_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MULTI-MSMS UPN47_class_I_Rep_1 2 482.2793884277344 2 482.279118 962.543683 0.14742 7.1098E-05 -0.23232 -0.00011204 -0.084899 -4.0945E-05 482.2789802484944 61.377 0.53666 64.758 64.491 65.028 3.3815 52 36 2 0 0 0 0.38932 1 14410 14410 20.454 0.039092 1 170490 + + 853 17493 534 535 1114 1114 0.060912420743079565 ALCMEEEM 8 Unmodified _ALCMEEEM_ 0 0 0 HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|23|2|sense;ENST00000262994.8_1_4:144258370-144336709:+|nuORF HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|23|2|sense HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|23|2|sense MSMS UPN46_class_I_Rep_3 1 478.1824035644531 2 478.182114 954.349675 NaN NaN NaN NaN NaN NaN NaN 44.14 1 44.14 43.64 44.64 0 0 0 0 0.40581 1 8870 8870 2.8892 0 1 854 5975 535 536 1115 1115 -0.12932541739928638 ALDANIARL 9 Unmodified _ALDANIARL_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MSMS UPN47_class_I_Rep_1 2 478.7790832519531 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 49.526 1 53.185 52.685 53.685 3.6592 0 0 0 0.37692 1 10780 10780 6.2058 1.4498 1 855 4724 536 537 1116 1116 0.0655287616308442 ALDDRERR 8 Unmodified _ALDDRERR_ 0 0 0 nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3 nc|ENSG00000148498|Q8TEW0-9|PARD3 nc|ENSG00000148498|Q8TEW0-9|PARD3 MSMS UPN48_class_I_Rep_2 6 516.0413818359375 2 515.773054 1029.53155 NaN NaN NaN NaN NaN NaN NaN 30.252 1 33.887 33.387 34.387 3.6351 0 0 0 0.40738 1 4400 4400 0.79363 0 1 856 3514 537 538 1117 1117 0.017970183838542653 ALDETPFGVGG 11 Unmodified _ALDETPFGVGG_ 0 0 0 REV__ENST00000327155.9_1_18:20513373-20513421:+|nuORF REV__ENST00000327155.9_1_18:20513373-20513421:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 531.7587280273438 2 531.758746 1061.50294 0.38816 0.00020641 0.21635 0.00011505 0.60451 0.00032145 531.7587283675742 67.035 0.5644 70.226 70.099 70.664 3.1914 71 42 2 0 0 0 0.48412 1 16196 16196 8.1555 0.8663 1 77260 + 857 21766 538 539 1118 1118 -0.025351440359372646 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MSMS UPN46_class_I_Rep_3 1 511.2807312011719 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 60.232 1 60.232 59.732 60.732 0 0 0 0 0.3377 1 13351 13351 8.7454 3.9894 1 858 2230 539 540 1119 1119 0.03970920866152028 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MSMS UPN46_class_I_Rep_3 1 511.28240966796875 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 60.275 1 60.275 59.775 60.775 0 0 0 0 0.3377 1 13363 13363 8.7454 0.83525 1 859 2230 539 540 1120 1120 0.03970920866152028 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS UPN47_class_I_Rep_1 2 511.2816467285156 2 511.281857 1020.54916 0.19303 9.869E-05 0.014566 7.4474E-06 0.20759 0.00010614 511.28180041945484 54.746 0.93056 58.248 57.622 58.553 3.5014 76 51 2 0 0 0 0.33908 3 12338 12338;12375;12433 11.495 2.7493 1 110300 860 2230 539 540 1121;1122;1123 1121 0.03970920866152028 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS UPN47_class_I_Rep_2 3 511.2821350097656 2 511.281857 1020.54916 0.20034 0.00010243 0.057683 2.9492E-05 0.25802 0.00013192 511.28182803285745 55.063 0.78801 58.373 57.917 58.705 3.3102 69 44 2 0 0 0 0.26468 3 12491 12447;12491;12562 16.149 3.1066 1 92790 861 2230 539 540 1124;1125;1126 1125 0.03970920866152028 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS UPN47_class_I_Rep_3 4 511.2825927734375 2 511.281857 1020.54916 0.25635 0.00013107 0.19068 9.7493E-05 0.44704 0.00022856 511.2818550246594 55.089 0.84228 58.267 57.949 58.791 3.1779 77 51 2 0 0 0 0.31407 3 12536 12536;12545;12602 13.042 2.9685 1 135440 862 2230 539 540 1127;1128;1129 1127 0.03970920866152028 ALDFRFAI 8 Unmodified _ALDFRFAI_ 0 0 0 L1MEj_dup2129|chr18:9236308-9237039:+|1.0864726507880915|0.0280618555948952|5.27|151.0|17|2|sense L1MEj_dup2129|chr18:9236308-9237039:+|1.0864726507880915|0.0280618555948952|5.27|151.0|17|2|sense L1MEj_dup2129|chr18:9236308-9237039:+|1.0864726507880915|0.0280618555948952|5.27|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 476.7767639160156 2 476.766178 951.517802 0.12646 6.0292E-05 -0.18773 -8.9503E-05 -0.061268 -2.9211E-05 476.7660570479421 62.174 0.68329 65.542 65.359 66.043 3.3681 75 43 2 0 0 0 0.82752 1 14771 14771 13.508 2.3934 1 119710 863 13464 540 541 1130 1130 0.04010392622706149 ALDGLLQQV 9 Unmodified _ALDGLLQQV_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MSMS UPN47_class_I_Rep_1 2 478.77362060546875 2 478.7742 955.533846 0.098866 4.7334E-05 -0.12222 -5.8517E-05 -0.023356 -1.1182E-05 478.7740777448816 70.397 0.54652 73.768 73.46 74.007 3.3713 82 54 2 0 0 0 0.081756 1 17080 17080 38.176 3.7738 1 109890 864 1751 541 542 1131 1131 0.0543005406894963 ALDGLLQQV 9 Unmodified _ALDGLLQQV_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MSMS UPN47_class_I_Rep_3 4 478.77423095703125 2 478.7742 955.533846 0.072865 3.4886E-05 -0.25413 -0.00012167 -0.18126 -8.6783E-05 478.7740311932128 70.639 0.55109 73.851 73.558 74.109 3.2113 74 47 2 0 0 0 0.21414 1 17223 17223 19.362 1.2156 1 121400 865 1751 541 542 1132 1132 0.0543005406894963 ALDGLLQQV 9 Unmodified _ALDGLLQQV_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 478.7742 955.533846 0.12766 6.1118E-05 -0.31819 -0.00015234 -0.19053 -9.1221E-05 478.77401598645537 70.635 0.48443 73.918 73.669 74.154 3.2828 0.071997 -9.881E-05 NaN 38.176 62 46 2 NaN NaN NaN NaN 0 NaN NaN 0 120200 866 1751 541 542 0.0543005406894963 ALDRVWWF 8 Unmodified _ALDRVWWF_ 0 0 0 REV__LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|45|1|anti-sense REV__LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|45|1|anti-sense MSMS UPN46_class_I_Rep_3 1 546.7850952148438 2 546.784902 1091.55525 NaN NaN NaN NaN NaN NaN NaN 116.24 1 116.24 115.74 116.74 0 0 0 0 0.40738 1 28768 28768 0.79363 0 1 + 867 30794 542 543 1133 1133 0.013134838883161137 ALDRYWSI 8 Unmodified _ALDRYWSI_ 0 0 0 ENSG00000157219|ENST00000287907|HTR5A ENSG00000157219|ENST00000287907|HTR5A ENSG00000157219|ENST00000287907|HTR5A MSMS UPN48_class_I_Rep_3 7 512.2660522460938 2 512.266542 1022.51853 NaN NaN NaN NaN NaN NaN NaN 53.701 1 57.284 56.784 57.784 3.5836 0 0 0 0.40292 1 11217 11217 6.7232 0.99131 1 868 3756 543 544 1134 1134 0.00817187271752573 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-SECPEP UPN47_class_I_Rep_1 2 523.310546875 2 523.761289 1045.50803 0.25272 0.00013237 -0.181 -9.4801E-05 0.071723 3.7566E-05 523.7611603111986 54.256 0.53372 57.758 57.466 58 3.5014 33 24 2 0 0 0 0.11705 1 12196 12196 10.824 3.5347 1 53159 869 2831 544 545 1135 1135 -0.012908401733284336 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-SECPEP UPN47_class_I_Rep_2 3 523.310546875 2 523.761289 1045.50803 0.11541 6.045E-05 -0.17034 -8.9215E-05 -0.05492 -2.8765E-05 523.7612305521446 54.536 0.36978 57.854 57.529 57.899 3.3187 25 18 2 0 0 0 0.11021 1 12288 12288 14.838 4.0143 1 54985 870 2831 544 545 1136 1136 -0.012908401733284336 ALDSHILDY 9 Unmodified _ALDSHILDY_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-SECPEP UPN47_class_I_Rep_3 4 523.3101806640625 2 523.761289 1045.50803 0.34155 0.00017889 -0.56822 -0.00029761 -0.22668 -0.00011872 523.760886930505 54.568 0.5794 57.753 57.494 58.074 3.1856 40 32 2 0 0 0 0.11705 1 12382 12382 10.824 1.4765 1 85777 871 2831 544 545 1137 1137 -0.012908401733284336 ALDSQVPKV 9 Unmodified _ALDSQVPKV_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS UPN46_class_I_Rep_3 1 478.77392578125 2 478.7742 955.533846 0.23802 0.00011396 -0.35521 -0.00017007 -0.11719 -5.6109E-05 478.77387318244394 44.345 0.76175 44.345 43.85 44.611 0 137 72 3 0 0 0 0.016816 2 8919 8883;8919 65.474 25.524 1 611230 872 2563 545 546 1138;1139 1139 0.0543005406894963 ALDSQVPKV 9 Unmodified _ALDSQVPKV_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS UPN47_class_I_Rep_1 2 478.7738342285156 2 478.7742 955.533846 -0.28819 -0.00013798 0.032492 1.5557E-05 -0.2557 -0.00012242 478.7740988965808 39.643 0.71228 43.31 42.992 43.704 3.6668 94 52 2 0 0 0 0.05757 4 7782 7705;7743;7782;7822 45.74 12.954 1 169490 873 2563 545 546 1140;1141;1142;1143 1142 0.0543005406894963 ALDSQVPKV 9 Unmodified _ALDSQVPKV_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS UPN47_class_I_Rep_2 3 478.77386474609375 2 478.7742 955.533846 -0.2399 -0.00011486 -0.047834 -2.2902E-05 -0.28773 -0.00013776 478.7741115510232 39.954 0.69563 43.325 43.044 43.74 3.3712 79 46 2 0 0 0 0.0094161 3 7920 7836;7881;7920 70.332 26.474 1 188210 874 2563 545 546 1144;1145;1146 1146 0.0543005406894963 ALDSQVPKV 9 Unmodified _ALDSQVPKV_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS UPN47_class_I_Rep_3 4 478.7742004394531 2 478.7742 955.533846 -0.40539 -0.00019409 0.067257 3.2201E-05 -0.33814 -0.00016189 478.7741549921146 40.053 0.75436 43.29 42.967 43.722 3.2372 107 48 3 0 0 0 0.048662 3 7981 7939;7981;8021 49.554 13.427 1 134470 875 2563 545 546 1147;1148;1149 1148 0.0543005406894963 ALDTRVVEL 9 Unmodified _ALDTRVVEL_ 0 0 0 ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A MULTI-MSMS UPN47_class_I_Rep_1 2 508.30194091796875 2 508.292756 1014.57096 0.12776 6.4941E-05 -0.29218 -0.00014851 -0.16442 -8.3574E-05 508.29250007860776 51.729 0.61109 55.323 55.028 55.639 3.5932 54 34 2 0 0 0 0.19147 1 11453 11453 21.537 3.3906 1 106200 876 1738 546 547 1150 1150 0.06425725614712974 ALDTRVVEL 9 Unmodified _ALDTRVVEL_ 0 0 0 ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A MULTI-MSMS UPN47_class_I_Rep_2 3 508.30206298828125 2 508.292756 1014.57096 0.22388 0.0001138 -0.46481 -0.00023626 -0.24093 -0.00012246 508.2924733661212 52.071 0.52524 55.404 55.092 55.617 3.3332 46 30 2 0 0 0 0.20317 3 11589 11546;11589;11593 20.415 3.3016 1 119110 877 1738 546 547 1151;1152;1153 1152 0.06425725614712974 ALDTRVVEL 9 Unmodified _ALDTRVVEL_ 0 0 0 ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A MULTI-MSMS UPN47_class_I_Rep_3 4 508.3021240234375 2 508.292756 1014.57096 0.33391 0.00016972 -0.50033 -0.00025431 -0.16642 -8.4589E-05 508.29242316613175 52.173 0.52619 55.378 55.096 55.623 3.2055 60 33 2 0 0 0 0.20317 2 11680 11640;11680 20.415 6.5085 1 126780 878 1738 546 547 1154;1155 1155 0.06425725614712974 ALEFKGPEEN 10 Unmodified _ALEFKGPEEN_ 0 0 0 REV__L1MD2_dup126|chr1:43795692-43796901:+|1.2437035080795062|0.0086763047811838|7.16|150.0|38|3|sense REV__L1MD2_dup126|chr1:43795692-43796901:+|1.2437035080795062|0.0086763047811838|7.16|150.0|38|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.2777099609375 2 567.277303 1132.54005 0.33362 0.00018925 0.31862 0.00018074 0.65224 0.00037 567.2774053342404 55.327 0.78472 58.806 58.284 59.069 3.4785 74 49 2 0 0 0 0.56155 1 12536 12536 2.7352 0.23671 1 133450 + 879 27391 547 548 1156 1156 -0.02091472490178603 ALENMLCELV 10 Unmodified _ALENMLCELV_ 0 0 0 nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6 nc|ENSG00000167549|Q6QEF8-4|CORO6 nc|ENSG00000167549|Q6QEF8-4|CORO6 MSMS UPN48_class_I_Rep_3 7 568.2285766601562 2 567.78031 1133.54607 NaN NaN NaN NaN NaN NaN NaN 115.17 1 118.81 118.31 119.31 3.6433 0 0 0 0.53105 1 27398 27398 1.3295 0.5359 1 880 4313 548 549 1157 1157 -0.015364135745357999 ALESGLFGGGI 11 Unmodified _ALESGLFGGGI_ 0 0 0 REV__nc|ENSG00000156709|O95831-4|AIFM1 REV__nc|ENSG00000156709|O95831-4|AIFM1 MULTI-MSMS UPN47_class_I_Rep_1 2 510.7716369628906 2 510.771657 1019.52876 0.25874 0.00013216 -0.22493 -0.00011489 0.033805 1.7267E-05 510.7714791957259 77.611 0.65173 81.04 80.752 81.403 3.4289 175 63 3 0 0 0 0.30752 3 19317 19243;19280;19317 29.082 2.4836 1 589330 + 881 19803 549 550 1158;1159;1160 1160 0.019777502063448082 ALESGLFGGGI 11 Unmodified _ALESGLFGGGI_ 0 0 0 REV__nc|ENSG00000156709|O95831-4|AIFM1 REV__nc|ENSG00000156709|O95831-4|AIFM1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7716064453125 2 510.771657 1019.52876 0.16687 8.5233E-05 -0.14098 -7.2008E-05 0.025891 1.3225E-05 510.77153325544026 77.767 0.76114 81.11 80.776 81.537 3.3428 193 79 3 0 0 0 0.4608 1 19233 19233 8.7454 2.5396 1 578620 + 882 19803 549 550 1161 1161 0.019777502063448082 ALETLVLGALY 11 Unmodified _ALETLVLGALY_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS UPN48_class_I_Rep_2 6 582.3412475585938 2 581.839539 1161.66453 0.48014 0.00027936 -0.66462 -0.0003867 -0.18448 -0.00010734 581.8390824206934 108.77 0.38037 112.45 112.25 112.63 3.6746 49 34 2 0 0 0 0.56119 1 25853 25853 6.2058 2.0163 1 3157300 + 883 18608 550 551 1162 1162 0.09016024997163186 ALEYHHHDL 9 Unmodified _ALEYHHHDL_ 0 0 0 ENSG00000121957|ENST00000264126|GPSM2 ENSG00000121957|ENST00000264126|GPSM2 ENSG00000121957|ENST00000264126|GPSM2 MSMS UPN46_class_I_Rep_3 1 567.7699584960938 2 567.76998 1133.52541 NaN NaN NaN NaN NaN NaN NaN 25.813 1 25.813 25.313 26.313 0 0 0 0 0.39518 1 3596 3596 1.8442 0 1 884 2372 551 552 1163 1163 -0.0360149984767304 ALEYHHHDL 9 Unmodified _ALEYHHHDL_ 0 0 0 ENSG00000121957|ENST00000264126|GPSM2 ENSG00000121957|ENST00000264126|GPSM2 ENSG00000121957|ENST00000264126|GPSM2 MSMS UPN46_class_I_Rep_3 1 567.7698364257812 2 567.76998 1133.52541 NaN NaN NaN NaN NaN NaN NaN 25.984 1 25.984 25.484 26.484 0 0 0 0 0.39518 1 3648 3648 1.8442 0.36234 1 885 2372 551 552 1164 1164 -0.0360149984767304 ALFAKVAATKS 11 Unmodified _ALFAKVAATKS_ 0 0 0 ENST00000467628.1_1_3:18393447-18419817:-|nuORF;ENSG00000182568.17,SATB1,chr3,-,I17.1,18353085,18378169|25|27.03|2|intron;ENSG00000182568.17,SATB1,chr3,-,I17.1,18353085,18378169|25|27.03|3|intron;ENSG00000182568.17,SATB1,chr3,-,I17.1,18353085,18378169|25|27.03|1|intron;ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1 ENST00000467628.1_1_3:18393447-18419817:-|nuORF ENST00000467628.1_1_3:18393447-18419817:-|nuORF MSMS UPN48_class_I_Rep_2 6 553.829833984375 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.072 1 82.705 82.205 83.205 3.6331 0 0 0 0.38417 1 18773 18773 0.96228 0.36078 1 886 4961 552 553 1165 1165 0.10094577919790026 ALFCMFHYEFM 11 Unmodified _ALFCMFHYEFM_ 0 0 0 REV__L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|28|1|anti-sense REV__L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|28|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.2038269042969 3 480.2046 1437.59197 0.15855 7.6136E-05 -1.3324 -0.00063983 -1.1739 -0.0005637 480.5383937632326 59.949 0.36 63.347 63.157 63.517 3.3982 35 22 2 0 0 0 0.67113 1 13963 13963 1.3296 0.82369 1 113480 + 887 24421 553 554 1166 1166 -0.10932091663926258 ALFDSFRTF 9 Unmodified _ALFDSFRTF_ 0 0 0 REV__L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|119|2|anti-sense REV__L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|119|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.2792358398438 2 552.279649 1102.54475 0.23922 0.00013211 -0.26577 -0.00014678 -0.026549 -1.4662E-05 552.7808209738582 53.978 1.0399 57.562 57.121 58.161 3.5836 217 74 4 0 0 0 0.38714 1 11480 11480 8.7454 1.4562 1 984130 + 888 25376 554 555 1167 1167 -0.0024254355676021078 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-SECPEP UPN47_class_I_Rep_1 2 523.30322265625 2 523.773865 1045.53318 0.3413 0.00017876 -0.049261 -2.5802E-05 0.29204 0.00015296 523.7737417981647 79.782 0.52108 83.247 82.826 83.348 3.465 80 58 2 0 0 0 0.10301 1 19907 19907 18.146 11.941 1 196190 889 3081 555 556 1168 1168 0.012232146292262769 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-SECPEP UPN47_class_I_Rep_3 4 523.3034057617188 2 523.773865 1045.53318 0.36394 0.00019062 -0.10657 -5.5818E-05 0.25737 0.00013481 523.7736217723282 79.708 0.68584 83.003 82.698 83.383 3.295 150 70 3 0 0 0 0.073107 1 19968 19968 29.082 15.176 1 254140 890 3081 555 556 1169 1169 0.012232146292262769 ALFFALALI 9 Unmodified _ALFFALALI_ 0 0 0 L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|140|3|anti-sense L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|140|3|anti-sense L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|140|3|anti-sense MSMS UPN48_class_I_Rep_2 6 489.80596923828125 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 83.686 1 87.367 86.867 87.867 3.6814 0 0 0 0.3264 1 19897 19897 9.3474 4.1168 1 891 10695 556 557 1170 1170 0.10529610839023462 ALFFRARL 8 Unmodified _ALFFRARL_ 0 0 0 REV__L1MC1_dup9447|chr11:116892362-116893385:+|3.323947816190027|0.1856267814787159|4.16|151.0|35|1|anti-sense REV__L1MC1_dup9447|chr11:116892362-116893385:+|3.323947816190027|0.1856267814787159|4.16|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.3031005859375 2 497.303262 992.59197 NaN NaN NaN NaN NaN NaN NaN 63.791 1 67.249 66.749 67.749 3.4578 0 0 0 0.40604 1 14389 14389 2.5775 0.51773 1 + 892 26623 557 558 1171 1171 0.0953778050488836 ALFFTKFF 8 Unmodified _ALFFTKFF_ 0 0 0 REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|118|3|anti-sense REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|118|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.78240966796875 2 510.781296 1019.54804 NaN NaN NaN NaN NaN NaN NaN 53.339 1 56.867 56.367 57.367 3.5278 0 0 0 0.40625 1 11942 11942 2.3027 1.5091 1 + 893 26176 558 559 1172 1172 0.039047512878937596 ALFFTKFF 8 Unmodified _ALFFTKFF_ 0 0 0 REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|118|3|anti-sense REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|118|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7807922363281 2 510.781296 1019.54804 0.20319 0.00010378 -0.4068 -0.00020779 -0.20362 -0.000104 511.2827127374312 53.499 0.30842 56.825 56.652 56.96 3.3266 32 21 2 0 0 0 0.82752 1 11986 11986 2.3027 0.24298 1 50415 + 894 26176 558 559 1173 1173 0.039047512878937596 ALFKLWEI 8 Unmodified _ALFKLWEI_ 0 0 0 REV__ENST00000487124.1_1_3:123694216-123694345:-|nuORF REV__ENST00000487124.1_1_3:123694216-123694345:-|nuORF MSMS UPN48_class_I_Rep_1 5 510.299560546875 2 510.299853 1018.58515 NaN NaN NaN NaN NaN NaN NaN 63.473 1 66.93 66.43 67.43 3.4578 0 0 0 0.40501 1 14293 14293 3.9444 0.66309 1 + 895 17753 559 560 1174 1174 0.07660422833657776 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MSMS UPN47_class_I_Rep_1 2 450.781494140625 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.42 1 96.141 95.641 96.641 3.7209 0 0 0 0.051022 1 23031 23031 36.466 8.2929 1 896 4285 560 561 1175 1175 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MSMS UPN47_class_I_Rep_1 2 450.78082275390625 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.605 1 96.326 95.826 96.826 3.7209 0 0 0 0.029365 1 23070 23070 45.75 17.577 1 897 4285 560 561 1176 1176 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MSMS UPN47_class_I_Rep_1 2 450.7820739746094 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.727 1 96.448 95.948 96.948 3.7209 0 0 0 0.011822 1 23095 23095 56.048 10.298 1 898 4285 560 561 1177 1177 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MSMS UPN47_class_I_Rep_2 3 450.7812805175781 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.505 1 95.97 95.47 96.47 3.4652 0 0 0 0.029365 1 22864 22864 45.75 17.577 1 899 4285 560 561 1178 1178 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.78131103515625 2 450.781296 899.54804 -0.17685 -7.9721E-05 0.32761 0.00014768 0.15076 6.7962E-05 450.7815540559716 92.712 0.0858 96.115 96.053 96.139 3.4034 19 12 2 0 0 0 0.013862 1 23135 23135 67.413 21.663 1 195230 900 4285 560 561 1179 1179 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.7820129394531 2 450.781296 899.54804 -0.17681 -7.9705E-05 0.17775 8.0127E-05 0.00093565 4.2177E-07 450.78146985824344 92.847 0.23821 96.252 96.14 96.379 3.4052 51 33 2 0 0 0 0.19841 1 23163 23163 20.871 6.2895 1 166430 901 4285 560 561 1180 1180 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.78204345703125 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.459 1 95.862 95.362 96.362 3.4034 0 0 0 0.011822 1 23085 23085 56.048 19.582 1 902 4285 560 561 1181 1181 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.7813415527344 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 93.095 1 96.501 96.001 97.001 3.4052 0 0 0 0.029365 1 23222 23222 45.75 17.577 1 903 4285 560 561 1182 1182 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 450.781296 899.54804 0.17071 7.6954E-05 -0.23455 -0.00010573 -0.063836 -2.8776E-05 450.7813155604253 92.314 0.13986 96.035 95.962 96.102 3.7209 -0.12704 -0.00012366 NaN 20.871 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 163570 904 4285 560 561 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 450.781296 899.54804 0.17019 7.6717E-05 -0.027331 -1.232E-05 0.14286 6.4397E-05 450.7813935902101 92.218 0.12319 95.939 95.838 95.962 3.7209 -0.087872 -0.00018253 NaN 67.413 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 88714 905 4285 560 561 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3 ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000469684.1_1_15:44038662-44048907:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 450.781296 899.54804 0.023775 1.0717E-05 -0.38749 -0.00017467 -0.36372 -0.00016396 450.7812950470908 92.733 0.098015 96.198 96.124 96.222 3.4652 0.036439 -0.00026155 NaN 20.871 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 82632 906 4285 560 561 0.09424751287883737 ALFQHITAL 9 Unmodified _ALFQHITAL_ 0 0 0 nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP MULTI-MSMS UPN47_class_I_Rep_1 2 507.29217529296875 2 507.292559 1012.57057 0.23674 0.0001201 -0.27433 -0.00013917 -0.037595 -1.9072E-05 507.2923167446306 61.357 0.63852 64.739 64.429 65.067 3.3815 84 45 2 0 0 0 0.31407 2 14357 14357;14399 13.042 1.4022 1 169570 907 909 561 562 1183;1184 1183 0.06478350685495116 ALFQHITAL 9 Unmodified _ALFQHITAL_ 0 0 0 nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP MULTI-MSMS UPN47_class_I_Rep_2 3 507.2926330566406 2 507.292559 1012.57057 0.17173 8.7119E-05 -0.23933 -0.00012141 -0.067595 -3.4291E-05 507.2923164960913 61.774 0.78114 65.033 64.641 65.422 3.2594 78 48 2 0 0 0 0.13244 2 14535 14535;14573 27.629 11.782 1 131400 908 909 561 562 1185;1186 1185 0.06478350685495116 ALFQHITAL 9 Unmodified _ALFQHITAL_ 0 0 0 nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP MULTI-MSMS UPN47_class_I_Rep_3 4 507.29248046875 2 507.292559 1012.57057 0.20544 0.00010422 -0.29493 -0.00014962 -0.089494 -4.54E-05 507.29230438673454 61.763 0.62902 64.929 64.781 65.41 3.1667 62 45 2 0 0 0 0.24936 1 14607 14607 17.113 4.5813 1 144350 909 909 561 562 1187 1187 0.06478350685495116 ALFWRTTW 8 Unmodified _ALFWRTTW_ 0 0 0 REV__ENST00000545398.5_1_X:100296354-100297102:-|nuORF REV__ENST00000545398.5_1_X:100296354-100297102:-|nuORF MSMS UPN48_class_I_Rep_3 7 540.771728515625 2 540.784902 1079.55525 NaN NaN NaN NaN NaN NaN NaN 76.963 1 80.565 80.065 81.065 3.6016 0 0 0 0.4032 1 18150 18150 6.3541 0 1 + 910 22934 562 563 1188 1188 0.01865483888309427 ALGDEIFLHS 10 Unmodified _ALGDEIFLHS_ 0 0 0 ENST00000490939.1_1_6:25087010-25108891:-|nuORF;nc|ENSG00000168405|Q9Y471-4|CMAHP;nc|ENSG00000168405|Q9Y471|CMAHP ENST00000490939.1_1_6:25087010-25108891:-|nuORF ENST00000490939.1_1_6:25087010-25108891:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 551.8164672851562 2 551.282389 1100.55022 0.57403 0.00031646 -0.21017 -0.00011586 0.36386 0.00020059 551.7831327035049 59.289 0.078892 62.776 62.743 62.822 3.4868 8 4 2 0 0 0 0.84575 1 12995 12995 13.906 0.86358 1 40326 911 7068 563 564 1189 1189 0.003971352350617963 ALGDFGIRL 9 Unmodified _ALGDFGIRL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS UPN47_class_I_Rep_1 2 481.7869873046875 2 481.276909 960.539266 0.090131 4.3378E-05 -0.16622 -7.9996E-05 -0.076086 -3.6618E-05 481.2767129607756 67.994 0.73067 71.358 71.055 71.786 3.3646 73 55 2 0 0 0 0.17897 1 16403 16403 22.736 3.4793 1 90393 912 568 564 565 1190 1190 0.05741777651417124 ALGDFGIRL 9 Unmodified _ALGDFGIRL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS UPN47_class_I_Rep_2 3 481.7872009277344 2 481.276909 960.539266 0.13413 6.4554E-05 -0.14804 -7.1248E-05 -0.013909 -6.6942E-06 481.2767878859722 68.306 0.1965 71.575 71.528 71.724 3.2696 22 16 2 0 0 0 0.16559 1 16517 16517 24.021 0 1 76662 913 568 564 565 1191 1191 0.05741777651417124 ALGDFGIRL 9 Unmodified _ALGDFGIRL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-SECPEP UPN47_class_I_Rep_2 3 481.3372802734375 2 481.276909 960.539266 0.13294 6.398E-05 -0.051623 -2.4845E-05 0.081315 3.9135E-05 481.2767694861588 68.223 0.31487 71.492 71.222 71.537 3.2696 39 27 2 0 0 0 0.11309 1 16450 16450 13.906 0 1 121900 914 568 564 565 1192 1192 0.05741777651417124 ALGDFGIRL 9 Unmodified _ALGDFGIRL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS UPN47_class_I_Rep_3 4 481.27691650390625 2 481.276909 960.539266 0.094594 4.5526E-05 -0.080022 -3.8513E-05 0.014572 7.0133E-06 481.27687691894454 68.412 0.46459 71.609 71.26 71.724 3.1977 36 28 2 0 0 0 0.30034 1 16569 16569 13.906 0 1 97374 915 568 564 565 1193 1193 0.05741777651417124 ALGFPFLSYF 10 Unmodified _ALGFPFLSYF_ 0 0 0 L1PB3_dup1478|chr7:90370079-90370709:+|1.0359000748115308|0.4568927020981367|1.18|151.0|37|3|anti-sense L1PB3_dup1478|chr7:90370079-90370709:+|1.0359000748115308|0.4568927020981367|1.18|151.0|37|3|anti-sense L1PB3_dup1478|chr7:90370079-90370709:+|1.0359000748115308|0.4568927020981367|1.18|151.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.3021240234375 2 581.302593 1160.59063 0.48982 0.00028473 -0.14678 -8.5326E-05 0.34303 0.00019941 581.3026022556089 101.58 0.13249 105.4 105.35 105.48 3.8153 26 19 2 0 0 0 0.38932 1 24019 24019 20.454 1.1966 1 188690 916 15251 565 566 1194 1194 0.016761016254804417 ALGKPGHKGPS 11 Unmodified _ALGKPGHKGPS_ 0 0 0 REV__ENSG00000240654|ENST00000332018|C1QTNF9 REV__ENSG00000240654|ENST00000332018|C1QTNF9 MULTI-MSMS UPN46_class_I_Rep_3 1 524.7965087890625 2 524.79854 1047.58253 0.11312 5.9366E-05 -4.0231 -0.0021113 -3.91 -0.0020519 525.2981932236171 31.946 0.07756 31.946 31.906 31.984 0 7 4 2 0 0 0 0.67398 1 5414 5414 1.0715 0.38109 1 49882 + 917 21225 566 567 1195 1195 0.06063967428713113 ALGLGHFR 8 Unmodified _ALGLGHFR_ 0 0 0 ENST00000472219.5_1_20:44469042-44469354:+|nuORF ENST00000472219.5_1_20:44469042-44469354:+|nuORF ENST00000472219.5_1_20:44469042-44469354:+|nuORF MSMS UPN47_class_I_Rep_3 4 435.75140380859375 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 75.414 1 78.661 78.161 79.161 3.2464 0 0 0 0.40604 1 18708 18708 2.5775 0 1 918 6931 567 568 1196 1196 0.047206590283167316 ALGPRQRQRR 10 Unmodified _ALGPRQRQRR_ 0 0 0 REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 619.3720703125 2 619.371061 1236.72757 0.58995 0.0003654 0.44092 0.00027309 1.0309 0.00063849 619.3711005884627 92.586 0.34172 96.464 96.248 96.589 3.8782 83 47 2 0 0 0 0.56309 1 21969 21969 1.6526 1.6526 1 223790 + 919 22114 568 569 1197 1197 0.11867448348380094 ALHDLLTTYA 10 Unmodified _ALHDLLTTYA_ 0 0 0 ENSG00000068354|ENST00000376771|TBC1D25 ENSG00000068354|ENST00000376771|TBC1D25 ENSG00000068354|ENST00000376771|TBC1D25 MULTI-SECPEP UPN47_class_I_Rep_3 4 558.7696533203125 2 559.298039 1116.58152 0.2266 0.00012674 -1.2796 -0.00071567 -1.053 -0.00058894 559.2970229697628 45.086 0.68335 48.33 48.038 48.721 3.2441 79 47 3 0 0 0 0.84575 1 9465 9465 14.838 4.0143 1 119990 920 1046 569 570 1198 1198 0.027897082691424657 ALHDQLFYL 9 Unmodified _ALHDQLFYL_ 0 0 0 ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L;ENST00000503240.5_1_5:148743537-148748214:+|nuORF ENST00000505669.5_1_5:148737686-148748214:+|nuORF ENST00000505669.5_1_5:148737686-148748214:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.2952880859375 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.16559 1 16213 16213 24.021 2.2739 1 271980 921 3416 570 571 1199 1199 0.02150029477343196 ALHQPIER 8 Unmodified _ALHQPIER_ 0 0 0 REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|114|1|anti-sense REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|114|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.2724609375 2 482.272158 962.529764 NaN NaN NaN NaN NaN NaN NaN 88.623 1 92.246 91.746 92.746 3.6229 0 0 0 0.40659 1 21264 21264 1.8442 0.36234 1 + 922 29884 571 572 1200 1200 0.04700009365899405 ALHQPIER 8 Unmodified _ALHQPIER_ 0 0 0 REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|114|1|anti-sense REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|114|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.2721862792969 2 482.272158 962.529764 NaN NaN NaN NaN NaN NaN NaN 89.562 1 93.187 92.687 93.687 3.6255 0 0 0 0.40659 1 21513 21513 1.8442 0.36234 1 + 923 29884 571 572 1201 1201 0.04700009365899405 ALHRNHPR 8 Unmodified _ALHRNHPR_ 0 0 0 L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|14|3|sense L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|14|3|sense L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 500.7662658691406 2 500.781016 999.54748 NaN NaN NaN NaN NaN NaN NaN 31.292 1 34.826 34.326 35.326 3.5342 0 0 0 0.40746 1 4611 4611 0.69038 0.16561 1 924 12656 572 573 1202 1202 0.04768769411418816 ALHRNHPR 8 Unmodified _ALHRNHPR_ 0 0 0 L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|14|3|sense L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|14|3|sense L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 500.78240966796875 2 500.781016 999.54748 NaN NaN NaN NaN NaN NaN NaN 27.892 1 31.647 31.147 32.147 3.7555 0 0 0 0.40625 1 3721 3721 2.3027 0.24298 1 925 12656 572 573 1203 1203 0.04768769411418816 ALHVHFHLY 9 Unmodified _ALHVHFHLY_ 0 0 0 REV__L1MA3_dup8764|chr21:43886552-43887066:-|1.0648767794827336|0.0545686975415512|4.29|149.0|2|1|sense REV__L1MA3_dup8764|chr21:43886552-43887066:-|1.0648767794827336|0.0545686975415512|4.29|149.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.80224609375 2 568.803626 1135.5927 0.4787 0.00027229 -1.4038 -0.00079848 -0.92509 -0.00052619 568.8028674583929 72.315 0.60074 75.879 75.597 76.198 3.5645 84 57 2 0 0 0 0.44858 1 16873 16873 5.2307 0.33366 1 210930 + 926 25130 573 574 1204 1204 0.03032575153952166 ALHYVLEAA 9 Unmodified _ALHYVLEAA_ 0 0 0 REV__ENSG00000167705|ENST00000301336|RILP REV__ENSG00000167705|ENST00000301336|RILP MSMS UPN47_class_I_Rep_3 4 493.7563781738281 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 31.111 1 34.41 33.91 34.91 3.2991 0 0 0 0.38478 1 5259 5259 4.3292 0 1 + 927 20233 574 575 1205 1205 0.0299407141451411 ALHYVYLSVFS 11 Unmodified _ALHYVYLSVFS_ 0 0 0 L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|104|1|anti-sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|104|1|anti-sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|104|1|anti-sense MSMS UPN47_class_I_Rep_2 3 649.8409423828125 2 649.842613 1297.67067 NaN NaN NaN NaN NaN NaN NaN 49.056 1 52.403 51.903 52.903 3.3465 0 0 0 0.38417 1 10661 10661 3.2813 0 1 928 11606 575 576 1206 1206 0.03374543228642324 ALIAEASSLD 10 Unmodified _ALIAEASSLD_ 0 0 0 REV__ENST00000526789.1_1_11:36300025-36310962:-|nuORF REV__ENST00000526789.1_1_11:36300025-36310962:-|nuORF MSMS UPN48_class_I_Rep_2 6 495.26373291015625 2 495.261122 988.507691 NaN NaN NaN NaN NaN NaN NaN 100.22 1 103.97 103.47 104.47 3.7575 0 0 0 0.53105 1 23805 23805 3.2813 0.70383 1 + 929 18432 576 577 1207 1207 0.012977401068042127 ALIDTVIAH 9 Unmodified _ALIDTVIAH_ 0 0 0 ENST00000433480.2_1_13:48876566-48877550:-|nuORF ENST00000433480.2_1_13:48876566-48877550:-|nuORF ENST00000433480.2_1_13:48876566-48877550:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 476.77655029296875 2 476.776742 951.538931 0.12447 5.9346E-05 -0.43654 -0.00020813 -0.31207 -0.00014879 476.7765480174253 62.828 0.6937 66.084 65.78 66.474 3.2558 63 44 2 0 0 0 0.33654 1 14971 14971 11.64 0 1 125460 930 6741 577 578 1208 1208 0.06122357931553779 ALIFRKEKY 9 Unmodified _ALIFRKEKY_ 0 0 0 REV__MSTB_dup6217|chr12:64633253-64633666:+|1.2443054555250623|0.016973192506554|6.2|151.0|23|2|anti-sense REV__MSTB_dup6217|chr12:64633253-64633666:+|1.2443054555250623|0.016973192506554|6.2|151.0|23|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 584.849365234375 2 584.347866 1166.68118 0.14326 8.3713E-05 0.38515 0.00022506 0.52841 0.00030877 584.3480248067744 24.505 0.13277 24.505 24.429 24.561 0 19 13 2 0 0 0 0.12535 1 3220 3220 0.45834 0.10771 1 49673 + 931 31889 578 579 1209 1209 0.10450570673765469 ALISAWWF 8 Unmodified _ALISAWWF_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|254|2|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|254|2|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|254|2|anti-sense MSMS UPN47_class_I_Rep_1 2 497.248291015625 2 497.263271 992.511988 NaN NaN NaN NaN NaN NaN NaN 59.206 1 62.623 62.123 63.123 3.4171 0 0 0 0.39408 1 13730 13730 10.183 0.83596 1 932 8014 579 580 1210 1210 0.015432941110248066 ALIWPRLVRQ 10 Unmodified _ALIWPRLVRQ_ 0 0 0 REV__L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|74|2|sense REV__L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|74|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.8895263671875 2 626.387857 1250.76116 0.63462 0.00039752 -0.61533 -0.00038544 0.019283 1.2079E-05 626.889175283031 105.88 0.43265 109.42 109.27 109.71 3.5345 86 64 2 0 0 0 0.56309 1 25713 25713 1.6526 0.17072 1 1214200 + 933 29666 580 581 1211 1211 0.14581057067607617 ALKAAAFGR 9 Unmodified _ALKAAAFGR_ 0 0 0 ENST00000452825.7_2_X:53254339-53254378:-|nuORF ENST00000452825.7_2_X:53254339-53254378:-|nuORF ENST00000452825.7_2_X:53254339-53254378:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.7715148925781 2 452.771794 903.529036 -0.059066 -2.6743E-05 -0.86448 -0.00039141 -0.92355 -0.00041816 452.77143426573514 30.51 0.46246 30.51 30.182 30.644 0 67 35 2 0 0 0 0.11683 1 4941 4941 30.637 11.198 1 271360 934 6820 581 582 1212 1212 0.07341214716848299 ALKAAAFGR 9 Unmodified _ALKAAAFGR_ 0 0 0 ENST00000452825.7_2_X:53254339-53254378:-|nuORF ENST00000452825.7_2_X:53254339-53254378:-|nuORF ENST00000452825.7_2_X:53254339-53254378:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 452.7712707519531 2 452.771794 903.529036 -0.052341 -2.3698E-05 -1.1283 -0.00051087 -1.1806 -0.00053456 452.77132779880185 30.684 0.26409 30.684 30.617 30.881 0 34 21 2 0 0 0 0.11705 1 5049 5049 10.824 8.5212 1 182290 935 6820 581 582 1213 1213 0.07341214716848299 ALKCLRGLFV 10 Unmodified _ALKCLRGLFV_ 0 0 0 REV__LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|81|3|anti-sense REV__LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|81|3|anti-sense MSMS UPN46_class_I_Rep_3 1 560.3404541015625 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 98.132 1 98.132 97.632 98.632 0 0 0 0 0.53105 1 23892 23892 3.2813 0 1 + 936 30909 582 583 1214 1214 0.1088353214727249 ALKDFVASI 9 Unmodified _ALKDFVASI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN47_class_I_Rep_1 2 482.2793884277344 2 482.279118 962.543683 0.14742 7.1098E-05 -0.23232 -0.00011204 -0.084899 -4.0945E-05 482.2789802484944 61.377 0.53666 64.758 64.491 65.028 3.3815 52 36 2 0 0 0 0.36258 1 14362 14362 10.151 1.4052 1 170490 937 1997 583 584 1215 1215 0.06091242074330694 ALKDFVASI 9 Unmodified _ALKDFVASI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN47_class_I_Rep_2 3 482.2789611816406 2 482.279118 962.543683 0.21091 0.00010172 -0.30943 -0.00014923 -0.098527 -4.7517E-05 482.2789484666488 61.74 0.62289 64.999 64.62 65.243 3.2594 49 38 2 0 0 0 0.35123 1 14491 14491 10.8 0.72558 1 96590 938 1997 583 584 1216 1216 0.06091242074330694 ALKDFVASI 9 Unmodified _ALKDFVASI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN47_class_I_Rep_3 4 482.2794189453125 2 482.279118 962.543683 0.054396 2.6234E-05 0.10551 5.0883E-05 0.1599 7.7117E-05 482.27895827345475 61.61 0.15317 64.776 64.676 64.829 3.1667 16 11 2 0 0 0 0.40701 1 14528 14528 7.609 0.88579 1 63644 939 1997 583 584 1217 1217 0.06091242074330694 ALKEALVR 8 Unmodified _ALKEALVR_ 0 0 0 ENSG00000226650|ENST00000435029|KIF4B REV__ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000226650|ENST00000435029|KIF4B REV__ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron MULTI-MSMS UPN47_class_I_Rep_2 3 450.287109375 2 450.287277 898.560001 -0.084452 -3.8028E-05 -0.44555 -0.00020063 -0.53 -0.00023865 450.2869611314747 56.172 0.68958 59.473 59.11 59.8 3.3009 65 42 2 0 0 0 0.82752 1 12753 12753 3.9444 0 1 119790 940 20646;5666 584 585 1218 1218 0.10666368031081674 ALKEEESELR 10 Unmodified _ALKEEESELR_ 0 0 0 REV__ENST00000492430.1_1_3:50151648-50153476:+|nuORF REV__ENST00000492430.1_1_3:50151648-50153476:+|nuORF MSMS UPN46_class_I_Rep_3 1 401.87823486328125 3 401.878704 1202.61428 NaN NaN NaN NaN NaN NaN NaN 28.636 1 28.636 28.136 29.136 0 0 0 0 0.53105 1 4424 4424 0.69767 0 1 + 941 17517 585 586 1219 1219 0.021078706013213377 ALKIKLTN 8 Unmodified _ALKIKLTN_ 0 0 0 ENST00000468868.1_1_7:48017962-48019116:-|nuORF;nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1 ENST00000468868.1_1_7:48017962-48019116:-|nuORF ENST00000468868.1_1_7:48017962-48019116:-|nuORF MSMS UPN47_class_I_Rep_1 2 450.7969665527344 2 450.797478 899.580402 NaN NaN NaN NaN NaN NaN NaN 30.012 1 33.757 33.257 34.257 3.7449 0 0 0 0.40472 1 4848 4848 4.3292 0 1 942 2963 586 587 1220 1220 0.12659538690877525 ALKIKLTN 8 Unmodified _ALKIKLTN_ 0 0 0 ENST00000468868.1_1_7:48017962-48019116:-|nuORF;nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1 ENST00000468868.1_1_7:48017962-48019116:-|nuORF ENST00000468868.1_1_7:48017962-48019116:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 450.7969055175781 2 450.797478 899.580402 -0.55038 -0.00024811 -0.28672 -0.00012925 -0.83709 -0.00037736 450.79719198528045 30.361 0.64985 33.843 33.509 34.158 3.4821 61 50 2 0 0 0 0.82752 2 4942 4942;4985 1.8442 0 1 45771 943 2963 586 587 1221;1222 1221 0.12659538690877525 ALKIKLTN 8 Unmodified _ALKIKLTN_ 0 0 0 ENST00000468868.1_1_7:48017962-48019116:-|nuORF;nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1 ENST00000468868.1_1_7:48017962-48019116:-|nuORF ENST00000468868.1_1_7:48017962-48019116:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.7965087890625 2 450.797478 899.580402 -0.85454 -0.00038522 -0.017938 -8.0864E-06 -0.87248 -0.00039331 450.79735145147026 30.527 0.53863 33.838 33.638 34.177 3.3116 58 41 2 0 0 0 0.82752 2 5153 5068;5153 4.3292 0 1 72783 944 2963 586 587 1223;1224 1224 0.12659538690877525 ALKIKLTN 8 Unmodified _ALKIKLTN_ 0 0 0 ENST00000468868.1_1_7:48017962-48019116:-|nuORF;nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1 ENST00000468868.1_1_7:48017962-48019116:-|nuORF ENST00000468868.1_1_7:48017962-48019116:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 450.797478 899.580402 -0.85454 -0.00038522 -0.017938 -8.0864E-06 -0.87248 -0.00039331 450.79735145147026 30.527 0.53863 33.838 33.638 34.177 3.3116 -0.0024736 9.1547E-05 NaN 1.8442 58 41 2 NaN NaN NaN NaN 0 NaN NaN 0 72783 945 2963 586 587 0.12659538690877525 ALKKFKKTFIP 11 Unmodified _ALKKFKKTFIP_ 0 0 0 REV__AluJr_dup47514|chr10:26463156-26463444:+|1.1636571955414028|0.0034458438329266|8.4|150.0|3|1|sense REV__AluJr_dup47514|chr10:26463156-26463444:+|1.1636571955414028|0.0034458438329266|8.4|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.28009033203125 3 440.951586 1319.83293 0.15259 6.7287E-05 1.598 0.00070464 1.7506 0.00077193 440.95189688502705 65.458 0.50301 68.937 68.779 69.282 3.4792 40 35 3 0 0 0 0.68024 1 14865 14865 0.50596 0 1 96075 + 946 17039 587 588 1225 1225 0.18580551701461445 ALKKLIHAT 9 Unmodified _ALKKLIHAT_ 0 0 0 ENST00000435712.1_1_10:131904549-131906742:+|nuORF ENST00000435712.1_1_10:131904549-131906742:+|nuORF ENST00000435712.1_1_10:131904549-131906742:+|nuORF MSMS UPN48_class_I_Rep_3 7 497.7263488769531 2 497.824027 993.633501 NaN NaN NaN NaN NaN NaN NaN 19.933 1 23.555 23.055 24.055 3.6215 0 0 0 0.4007 1 1601 1601 0.52476 0.12405 1 947 6747 588 589 1226 1226 0.13642916473577316 ALKPAPVHMKH 11 Unmodified _ALKPAPVHMKH_ 0 0 0 REV__nc|ENSG00000261236|Q14137-2|BOP1 REV__nc|ENSG00000261236|Q14137-2|BOP1 MSMS UPN48_class_I_Rep_1 5 410.2536315917969 3 410.237621 1227.69103 NaN NaN NaN NaN NaN NaN NaN 91.825 1 95.451 94.951 95.951 3.626 0 0 0 0.38417 1 22067 22067 1.2148 0.021489 1 + 948 21399 589 590 1227 1227 0.0862943540746528 ALKSLPFPT 9 Unmodified _ALKSLPFPT_ 0 0 0 Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|20|1|sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|20|1|sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|20|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.2894287109375 2 487.289485 972.564418 0.35695 0.00017394 0.0080136 3.9049E-06 0.36496 0.00017784 487.28938269830746 57.449 0.69796 60.963 60.636 61.334 3.5142 99 55 2 0 0 0 0.33654 3 12386 12386;12426;12465 11.64 0 1 310370 949 516 590 591 1228;1229;1230 1228 0.07703832454001258 ALKVGKLRLK 10 Unmodified _ALKVGKLRLK_ 0 0 0 REV__chr16:30245611-30245760|31|24.81|0.19|7.04|-|1|TE_info:MIRb,MIRb_dup187566,MIR,SINE,donor,+,30245760,30245862|NPIPB13,None|3 REV__chr16:30245611-30245760|31|24.81|0.19|7.04|-|1|TE_info:MIRb,MIRb_dup187566,MIR,SINE,donor,+,30245760,30245862|NPIPB13,None|3 MSMS UPN46_class_I_Rep_3 1 563.3934936523438 2 563.395151 1124.77575 NaN NaN NaN NaN NaN NaN NaN 58.857 1 58.857 58.357 59.357 0 0 0 0 0.53105 1 12978 12978 0.40072 0 1 + 950 17438 591 592 1231 1231 0.21835129215719462 ALKWPTFIG 9 Unmodified _ALKWPTFIG_ 0 0 0 REV__MER63A_dup2577|chr12:104548277-104548477:-|1.3212991736303503|0.003140066898208|8.72|151.0|2|1|sense REV__MER63A_dup2577|chr12:104548277-104548477:-|1.3212991736303503|0.003140066898208|8.72|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 516.7975463867188 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 36.519 1 39.766 39.266 40.266 3.247 0 0 0 0.39598 1 6894 6894 1.6526 0.17072 1 + 951 31515 592 593 1232 1232 0.06587538690882866 ALLATLAAYL 10 Unmodified _ALLATLAAYL_ 0 0 0 REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 510.3103942871094 2 510.310418 1018.60628 0.29583 0.00015097 0.11788 6.0155E-05 0.41371 0.00021112 510.31037265678077 78.113 0.42264 78.113 77.775 78.197 0 79 46 2 0 0 0 0.23621 1 18225 18225 39.957 1.7818 1 666010 + 952 18875 593 594 1233 1233 0.09772388142516775 ALLDKLYAL 9 Unmodified _ALLDKLYAL_ 0 0 0 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 MULTI-MSMS UPN46_class_I_Rep_3 1 510.3106689453125 2 510.310418 1018.60628 0.29583 0.00015097 0.11788 6.0155E-05 0.41371 0.00021112 510.31037265678077 78.113 0.42264 78.113 77.775 78.197 0 79 46 2 0 0 0 0.062142 2 18259 18259;18292 43.772 11.467 1 666010 953 4808 594 595 1234;1235 1234 0.09772388142516775 ALLDKLYAL 9 Unmodified _ALLDKLYAL_ 0 0 0 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 MULTI-MSMS UPN47_class_I_Rep_1 2 510.3104553222656 2 510.310418 1018.60628 0.22011 0.00011233 0.039543 2.0179E-05 0.25966 0.00013251 510.31031998382394 71.54 1.0382 74.915 74.503 75.541 3.3751 140 84 3 0 0 0 0.019142 3 17440 17440;17479;17551 63.961 11.467 1 618330 954 4808 594 595 1236;1237;1238 1236 0.09772388142516775 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS UPN47_class_I_Rep_1 2 512.2957153320312 2 512.295299 1022.57605 0.24362 0.0001248 -0.29583 -0.00015155 -0.052211 -2.6748E-05 512.2950326936202 63.305 0.5743 66.665 66.344 66.918 3.3595 55 45 2 0 0 0 0.13244 2 14963 14923;14963 27.629 7.1752 1 118690 955 2446 595 596 1239;1240 1240 0.06566029477335178 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS UPN47_class_I_Rep_2 3 512.2952880859375 2 512.295299 1022.57605 0.089191 4.5692E-05 -0.011147 -5.7105E-06 0.078044 3.9982E-05 512.2951981110841 63.647 0.53624 66.903 66.508 67.045 3.2556 67 44 2 0 0 0 0.074399 4 15094 15052;15056;15094;15129 39.95 13.066 1 88546 956 2446 595 596 1241;1242;1243;1244 1243 0.06566029477335178 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MSMS UPN47_class_I_Rep_3 4 512.295166015625 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 63.395 1 66.565 66.065 67.065 3.1698 0 0 0 0.2408 1 15094 15094 13.906 3.8321 1 957 2446 595 596 1245 1245 0.06566029477335178 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MSMS UPN47_class_I_Rep_3 4 512.2955932617188 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 63.525 1 66.695 66.195 67.195 3.1698 0 0 0 0.17222 1 15132 15132 18.146 7.3224 1 958 2446 595 596 1246 1246 0.06566029477335178 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MSMS UPN47_class_I_Rep_3 4 512.2959594726562 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 63.735 1 66.909 66.409 67.409 3.1741 0 0 0 0.38916 1 15195 15195 3.2813 1.4371 1 959 2446 595 596 1247 1247 0.06566029477335178 ALLDRIVSV 9 Unmodified _ALLDRIVSV_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS UPN47_class_I_Rep_1 2 493.30596923828125 2 493.305667 984.596781 0.1468 7.2417E-05 0.63869 0.00031507 0.78549 0.00038749 493.30558481221146 63.677 0.51953 67.033 66.805 67.325 3.3557 86 44 3 0 0 0 0.30497 1 15093 15093 13.615 2.8154 1 148550 960 3705 596 597 1248 1248 0.10386619857001733 ALLDRIVSV 9 Unmodified _ALLDRIVSV_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS UPN47_class_I_Rep_3 4 493.30596923828125 2 493.305667 984.596781 0.19817 9.776E-05 1.3707 0.00067619 1.5689 0.00077395 493.30568202408597 63.995 0.53197 67.169 67.015 67.547 3.1741 61 38 3 0 0 0 0.40701 1 15291 15291 7.609 2.3121 1 95045 961 3705 596 597 1249 1249 0.10386619857001733 ALLDSAHLL 9 Unmodified _ALLDSAHLL_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MULTI-SECPEP UPN47_class_I_Rep_1 2 476.77667236328125 2 476.776742 951.538931 0.12309 5.8685E-05 -0.23583 -0.00011244 -0.11275 -5.3755E-05 476.7766045352192 62.485 0.67783 65.853 65.614 66.292 3.3681 68 42 2 0 0 0 0.044513 1 14707 14707 48.346 6.2513 1 137930 962 999 597 598 1250 1250 0.06122357931565148 ALLDSQLNGF 10 Unmodified _ALLDSQLNGF_ 0 0 0 REV__L1MB3_dup6624|chr7:45057461-45058324:-|3.7242522693894906|0.061415493339619|5.92|151.0|52|2|anti-sense REV__L1MB3_dup6624|chr7:45057461-45058324:-|3.7242522693894906|0.061415493339619|5.92|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_3 4 539.2821655273438 2 539.282389 1076.55022 NaN NaN NaN NaN NaN NaN NaN 73.549 1 76.786 76.286 77.286 3.2363 0 0 0 0.53105 1 18170 18170 7.609 0.88579 1 + 963 25906 598 599 1251 1251 0.01501135235048423 ALLELAEEL 9 Unmodified _ALLELAEEL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_3 4 500.7822570800781 2 500.78169 999.548827 0.26952 0.00013497 -0.54483 -0.00027284 -0.27531 -0.00013787 501.2827177285939 83.592 0.12974 86.942 86.855 86.984 3.35 16 13 2 0 0 0 0.17897 1 20975 20975 22.736 0 1 49816 964 3728 599 600 1252 1252 0.04903501146270628 ALLELAEEL 9 Unmodified _ALLELAEEL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MATCH UPN48_class_I_Rep_1 5 2 500.78169 999.548827 0.21161 0.00010597 -1.128 -0.00056486 -0.91636 -0.0004589 500.78169185894353 83.026 0.04158 86.613 86.577 86.619 3.5871 -0.16479 -0.00055669 NaN 22.736 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 33836 965 3728 599 600 0.04903501146270628 ALLEMDARL 9 Oxidation (M) _ALLEM(Oxidation (M))DARL_ ALLEM(1)DARL ALLEM(40)DARL 0 0 1 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS UPN47_class_I_Rep_3 4 524.27978515625 2 524.278792 1046.54303 0.25392 0.00013312 0.50641 0.0002655 0.76033 0.00039863 524.2788123558922 47.604 0.2515 50.845 50.639 50.891 3.2405 22 21 2 0 0 0 0.073198 1 10294 10294 40.239 20.877 1 100700 966 4835 600 601 1253 1253 152 0.02162079362960867 ALLETVNRL 9 Unmodified _ALLETVNRL_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MSMS UPN47_class_I_Rep_3 4 514.8080444335938 2 514.808574 1027.60259 NaN NaN NaN NaN NaN NaN NaN 52.817 1 56.012 55.512 56.512 3.1948 0 0 0 0.38073 1 11863 11863 5.2969 2.0156 1 967 2943 601 602 1254 1254 0.0898971836866167 ALLGECAVPAL 11 Unmodified _ALLGECAVPAL_ 0 0 0 ENST00000571156.1_1_17:78181480-78183436:-|nuORF;ENST00000326317.10_1_17:78183109-78183520:-|nuORF ENST00000571156.1_1_17:78181480-78183436:-|nuORF ENST00000571156.1_1_17:78181480-78183436:-|nuORF MSMS UPN46_class_I_Rep_3 1 528.79345703125 2 528.791535 1055.56852 NaN NaN NaN NaN NaN NaN NaN 35.591 1 35.591 35.091 36.091 0 0 0 0 0.38417 1 6498 6498 5.7319 0.97584 1 968 6166 602 603 1255 1255 0.04295553885390291 ALLGILQHV 9 Unmodified _ALLGILQHV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-SECPEP UPN47_class_I_Rep_1 2 482.302978515625 2 482.302927 962.591301 0.094656 4.5653E-05 -0.31596 -0.00015239 -0.2213 -0.00010673 482.3027811531427 68.409 0.52104 71.773 71.479 72 3.3646 61 39 2 0 0 0 0.095427 1 16504 16504 20.454 7.9221 1 89917 969 799 603 604 1256 1256 0.10850941065177722 ALLGLQLVH 9 Unmodified _ALLGLQLVH_ 0 0 0 MLT2B1_dup3654|chr14:52311067-52311559:-|1.003157552391328|0.1885716426332303|2.41|151.0|5|1|sense MLT2B1_dup3654|chr14:52311067-52311559:-|1.003157552391328|0.1885716426332303|2.41|151.0|5|1|sense MLT2B1_dup3654|chr14:52311067-52311559:-|1.003157552391328|0.1885716426332303|2.41|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 482.7543029785156 2 482.302927 962.591301 0.096578 4.658E-05 -0.40524 -0.00019545 -0.30866 -0.00014887 482.302728380089 68.682 0.21459 72.047 72 72.215 3.3646 20 16 2 0 0 0 0.10341 1 16587 16587 16.942 0 1 47972 970 16504 604 605 1257 1257 0.10850941065166353 ALLIEKKP 8 Unmodified _ALLIEKKP_ 0 0 0 REV__nc|ENSG00000129007|Q96GE6-3|CALML4 REV__nc|ENSG00000129007|Q96GE6-3|CALML4 MSMS UPN48_class_I_Rep_2 6 456.3011169433594 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 45.421 1 49.179 48.679 49.679 3.7579 0 0 0 0.39996 1 8766 8766 7.9102 0.62092 1 + 971 18914 605 606 1258 1258 0.1262842283365444 ALLILLAQIR 10 Unmodified _ALLILLAQIR_ 0 0 0 REV__LTR8A_dup530|chr7:67255350-67256065:-|1.5036606618813502|0.1840634884658528|3.03|151.0|31|1|anti-sense REV__LTR8A_dup530|chr7:67255350-67256065:-|1.5036606618813502|0.1840634884658528|3.03|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.7420654296875 2 562.381709 1122.74886 NaN NaN NaN NaN NaN NaN NaN 80.505 1 80.505 80.005 81.005 0 0 0 0 0.53105 1 18968 18968 0.40072 0.093686 1 + 972 31037 606 607 1259 1259 0.19240020604524943 ALLKGSQLL 9 Unmodified _ALLKGSQLL_ 0 0 0 ENST00000461445.5_1_3:38051483-38071030:-|nuORF;ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1 ENST00000461445.5_1_3:38051483-38071030:-|nuORF ENST00000461445.5_1_3:38051483-38071030:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.80276 941.590967 NaN NaN NaN NaN NaN NaN NaN 95.482 1 98.957 98.457 99.457 3.4753 0 0 0 0.39428 1 23497 23497 2.0598 0 1 973 5180 607 608 1260 1260 0.11783521345330428 ALLLDQAAIR 10 Unmodified _ALLLDQAAIR_ 0 0 0 REV__ENSG00000198700|ENST00000361565|IPO9 REV__ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS UPN48_class_I_Rep_1 5 542.3294067382812 2 542.329673 1082.64479 0.51845 0.00028117 0.072562 3.9352E-05 0.59101 0.00032052 542.3296945735282 58.183 0.54983 61.67 61.565 62.115 3.487 45 31 2 0 0 0 0.56078 1 12783 12783 3.2813 0.97858 1 390830 + 974 21140 608 609 1261 1261 0.10677693777006425 ALLMLYLAI 9 Unmodified _ALLMLYLAI_ 0 0 0 ENSG00000103044|ENST00000569188|HAS3 ENSG00000103044|ENST00000569188|HAS3 ENSG00000103044|ENST00000569188|HAS3 MULTI-SECPEP UPN47_class_I_Rep_1 2 510.8443298339844 2 510.811739 1019.60893 0.22345 0.00011414 0.53688 0.00027425 0.76034 0.00038839 510.8120270521615 71.898 0.32106 75.273 75.103 75.424 3.3751 43 26 2 0 0 0 0.10758 1 17542 17542 14.582 2.0501 1 169930 975 1642 609 610 1262 1262 0.09990520275800918 ALLMLYLAI 9 Unmodified _ALLMLYLAI_ 0 0 0 ENSG00000103044|ENST00000569188|HAS3 ENSG00000103044|ENST00000569188|HAS3 ENSG00000103044|ENST00000569188|HAS3 MULTI-SECPEP UPN47_class_I_Rep_3 4 510.8443603515625 2 510.811739 1019.60893 0.27232 0.0001391 0.52578 0.00026858 0.7981 0.00040768 510.81204248622254 71.829 0.51376 75.048 74.698 75.212 3.2188 68 37 2 0 0 0 0.10758 1 17684 17684 14.582 2.0501 1 312640 976 1642 609 610 1263 1263 0.09990520275800918 ALLPMVPL 8 Unmodified _ALLPMVPL_ 0 0 0 REV__ENSG00000138050.15,THUMPD2,chr2,-,I8.1,39744655,39755294|34|5.79|1|intron REV__ENSG00000138050.15,THUMPD2,chr2,-,I8.1,39744655,39755294|34|5.79|1|intron MSMS UPN47_class_I_Rep_3 4 427.2642822265625 2 427.264425 852.514297 NaN NaN NaN NaN NaN NaN NaN 51.281 1 54.498 53.998 54.998 3.2163 0 0 0 0.4032 1 11400 11400 6.3541 0 1 + 977 19261 610 611 1264 1264 0.08214006524474371 ALLRASGVR 9 Unmodified _ALLRASGVR_ 0 0 0 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 MSMS UPN47_class_I_Rep_3 4 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 97.27 1 100.69 100.19 101.19 3.4216 0 0 0 0.39518 1 24116 24116 1.8442 0 1 978 3364 611 612 1265 1265 0.10392288636899139 ALLRCFCPLL 10 Unmodified _ALLRCFCPLL_ 0 0 0 REV__MER115_dup777|chr4:139865721-139865991:+|1.4073099160129756|0.0226743317366324|5.96|151.0|11|1|anti-sense REV__MER115_dup777|chr4:139865721-139865991:+|1.4073099160129756|0.0226743317366324|5.96|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 574.8190307617188 2 574.819573 1147.62459 NaN NaN NaN NaN NaN NaN NaN 69.836 1 73.349 72.849 73.849 3.5128 0 0 0 0.53105 1 16117 16117 3.2813 0 1 + 979 31078 612 613 1266 1266 0.05668483521208145 ALLRIIHAPYN 11 Unmodified _ALLRIIHAPYN_ 0 0 0 L1MB8_dup7111|chr8:42285760-42286096:+|1.1850881672677331|0.1361745010800372|3.12|151.0|20|2|anti-sense L1MB8_dup7111|chr8:42285760-42286096:+|1.1850881672677331|0.1361745010800372|3.12|151.0|20|2|anti-sense L1MB8_dup7111|chr8:42285760-42286096:+|1.1850881672677331|0.1361745010800372|3.12|151.0|20|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 427.3026123046875 3 427.587307 1279.74009 -0.5478 -0.00023423 -0.94758 -0.00040518 -1.4954 -0.00063941 427.58685418039545 65.582 0.12989 68.838 68.728 68.858 3.2556 10 8 2 0 0 0 22.551 1 15692 15692 1.3296 0.55311 1 40904 980 11031 613 614 1267 1267 0.11141046968077717 ALLRKKNFVK 10 Unmodified _ALLRKKNFVK_ 0 0 0 REV__nc|ENSG00000204524|Q5CZA5-2|ZNF805 REV__nc|ENSG00000204524|Q5CZA5-2|ZNF805 MSMS UPN46_class_I_Rep_3 1 406.26678466796875 3 406.267797 1215.78156 NaN NaN NaN NaN NaN NaN NaN 37.375 1 37.375 36.875 37.875 0 0 0 0 0.53105 1 7022 7022 0.62683 0 1 + 981 21197 614 615 1268 1268 0.18230227727394777 ALLRPLPIFE 10 Unmodified _ALLRPLPIFE_ 0 0 0 REV__ENSG00000142207|ENST00000382751|URB1 REV__ENSG00000142207|ENST00000382751|URB1 MSMS UPN48_class_I_Rep_1 5 584.8572998046875 2 584.858067 1167.70158 NaN NaN NaN NaN NaN NaN NaN 83.633 1 87.22 86.72 87.72 3.5871 0 0 0 0.53105 1 20004 20004 1.3295 0.13619 1 + 982 19400 615 616 1269 1269 0.12443741333549951 ALLSISDIIF 10 Unmodified _ALLSISDIIF_ 0 0 0 REV__L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|211|3|anti-sense REV__L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|211|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.3214721679688 2 546.320983 1090.62741 0.48163 0.00026312 -0.26898 -0.00014695 0.21265 0.00011618 546.3207841519636 79.436 0.46748 83.069 82.785 83.252 3.6331 74 51 2 0 0 0 0.40227 1 18847 18847 19.257 2.1441 1 373220 + 983 25708 616 617 1270 1270 0.0857235345135905 ALLSRLEQI 9 Unmodified _ALLSRLEQI_ 0 0 0 ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000125970|Q9UKM9-2|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MSMS UPN46_class_I_Rep_3 1 521.81640625 2 521.816399 1041.61824 NaN NaN NaN NaN NaN NaN NaN 68.805 1 68.805 68.305 69.305 0 0 0 0 1.3928E-06 1 15730 15730 70.332 18.702 1 984 2523 617 618 1271 1271 0.09910004885705348 ALLTRLLPLRR 11 Unmodified _ALLTRLLPLRR_ 0 0 0 nc|ENSG00000167889|Q3V5L5-2|MGAT5B nc|ENSG00000167889|Q3V5L5-2|MGAT5B nc|ENSG00000167889|Q3V5L5-2|MGAT5B MSMS UPN47_class_I_Rep_3 4 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.803 1 55.008 54.508 55.508 3.2055 0 0 0 0.38417 1 11559 11559 0.50596 0.41111 1 985 16743 618 619 1272 1272 0.22417277055819795 ALLVAKTGK 9 Unmodified _ALLVAKTGK_ 0 0 0 L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|46|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|46|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|46|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 450.797119140625 2 450.797478 899.580402 -0.85454 -0.00038522 -0.017938 -8.0864E-06 -0.87248 -0.00039331 450.79735145147026 30.527 0.53863 33.838 33.638 34.177 3.3116 58 41 2 0 0 0 0.47197 1 5106 5106 3.5965 0 1 72783 986 11477 619 620 1273 1273 0.12659538690888894 ALLVFILWKCG 11 Unmodified _ALLVFILWKCG_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MULTI-MSMS UPN47_class_I_Rep_2 3 421.582275390625 3 421.582505 1261.72569 -0.93966 -0.00039614 0.26654 0.00011237 -0.67312 -0.00028378 421.58272136498533 20.286 0.68256 23.693 23.308 23.991 3.4074 90 67 2 0 0 0 0.68024 1 2116 2116 0.50596 0 1 61339 987 1371 620 621 1274 1274 0.1052925849555777 ALLVFILWKCG 11 Unmodified _ALLVFILWKCG_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MULTI-MATCH UPN47_class_I_Rep_1 2 3 421.582505 1261.72569 -0.49291 -0.0002078 0.058572 2.4693E-05 -0.43434 -0.00018311 421.582575567374 20.39 0.15059 24.034 23.974 24.124 3.6436 0.17033 -0.0002487 NaN 0.50596 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 16915 988 1371 620 621 0.1052925849555777 ALLWIRPWL 9 Unmodified _ALLWIRPWL_ 0 0 0 Tigger1_dup5097|chr6:105315615-105316635:-|1.392680159102239|0.3950326579582479|1.82|151.0|40|1|anti-sense Tigger1_dup5097|chr6:105315615-105316635:-|1.392680159102239|0.3950326579582479|1.82|151.0|40|1|anti-sense Tigger1_dup5097|chr6:105315615-105316635:-|1.392680159102239|0.3950326579582479|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.357177734375 2 584.355494 1166.69644 0.42567 0.00024874 1.9123 0.0011175 2.338 0.0013662 584.356413523325 83.556 0.085144 87.143 87.078 87.163 3.5871 11 9 2 0 0 0 0.50015 1 19988 19988 0.6015 0 1 45255 989 33116 621 622 1275 1275 0.11975482261595971 ALMAYTYMH 9 Unmodified _ALMAYTYMH_ 0 0 0 REV__L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|220|3|anti-sense REV__L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|220|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.747802734375 2 550.748813 1099.48307 NaN NaN NaN NaN NaN NaN NaN 22.426 1 25.987 25.487 26.487 3.5605 0 0 0 0.39326 1 2186 2186 2.3027 0 1 + 990 29654 622 623 1276 1276 -0.06268934571903628 ALMHPKWVK 9 Unmodified _ALMHPKWVK_ 0 0 0 REV__L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|33|3|sense REV__L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|33|3|sense MSMS UPN48_class_I_Rep_2 6 555.3189697265625 2 555.318054 1108.62156 NaN NaN NaN NaN NaN NaN NaN 96.73 1 100.51 100.01 101.01 3.7804 0 0 0 0.39428 1 22983 22983 2.0598 0.21551 1 + 991 30219 623 624 1277 1277 0.07158976458731559 ALMPVLNQV 9 Oxidation (M) _ALM(Oxidation (M))PVLNQV_ ALM(1)PVLNQV ALM(57)PVLNQV 0 0 1 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS UPN46_class_I_Rep_3 1 500.778564453125 2 500.778428 999.542302 0.23732 0.00011884 0.12508 6.2638E-05 0.3624 0.00018148 500.7784750008892 61.321 0.64195 61.321 60.994 61.635 0 130 72 3 0 0 0 0.029391 3 13624 13593;13624;13659 57.471 27.247 1 697700 992 5652 624 625 1278;1279;1280 1279 169 0.04251284713939185 ALMPVLNQV 9 Oxidation (M) _ALM(Oxidation (M))PVLNQV_ ALM(1)PVLNQV ALM(42)PVLNQV 0 0 1 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MSMS UPN46_class_I_Rep_3 1 500.7784118652344 2 500.778428 999.542302 NaN NaN NaN NaN NaN NaN NaN 61.52 1 61.52 61.02 62.02 0 0 0 0 0.036183 1 13696 13696 42.095 22.838 1 993 5652 624 625 1281 1281 169 0.04251284713939185 ALMWGSLTVL 10 Unmodified _ALMWGSLTVL_ 0 0 0 ENST00000509689.5_1_4:3447320-3449280:+|nuORF ENST00000509689.5_1_4:3447320-3449280:+|nuORF ENST00000509689.5_1_4:3447320-3449280:+|nuORF MSMS UPN47_class_I_Rep_2 3 545.8043212890625 2 545.801903 1089.58925 NaN NaN NaN NaN NaN NaN NaN 43.755 1 47.113 46.613 47.613 3.358 0 0 0 0.53105 1 9057 9057 1.6526 0.17072 1 994 7174 625 626 1282 1282 0.048041442650628596 ALNEQIARL 9 Unmodified _ALNEQIARL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MSMS UPN47_class_I_Rep_1 2 514.2985229492188 2 514.298373 1026.58219 NaN NaN NaN NaN NaN NaN NaN 45.684 1 49.384 48.884 49.884 3.6999 0 0 0 0.3377 1 9619 9619 8.7454 2.5396 1 995 1210 626 627 1283 1283 0.0699654770885445 ALNHRFLF 8 Unmodified _ALNHRFLF_ 0 0 0 REV__L1PA13_dup3622|chr6:156192888-156193775:-|1.490999033314018|0.0039528846269031|8.56|149.0|67|3|anti-sense REV__L1PA13_dup3622|chr6:156192888-156193775:-|1.490999033314018|0.0039528846269031|8.56|149.0|67|3|anti-sense MSMS UPN48_class_I_Rep_1 5 509.2842712402344 2 509.285069 1016.55558 NaN NaN NaN NaN NaN NaN NaN 53.825 1 57.339 56.839 57.839 3.5143 0 0 0 0.40604 1 11336 11336 2.5775 0 1 + 996 29097 627 628 1284 1284 0.04796903608178127 ALNKYMCKY 9 Unmodified _ALNKYMCKY_ 0 0 0 L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|37|3|sense L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|37|3|sense L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.2786254882812 2 567.277738 1132.54092 0.33362 0.00018925 -0.44679 -0.00025345 -0.11317 -6.4201E-05 567.2774053342404 55.327 0.78472 58.806 58.284 59.069 3.4785 74 49 2 0 0 0 0.48846 1 12598 12598 1.8442 0.19162 1 133450 997 11522 628 629 1285 1285 -0.0200467264648978 ALNPKSTEQP 10 Unmodified _ALNPKSTEQP_ 0 0 0 REV__L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|151|3|sense REV__L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|151|3|sense MSMS UPN48_class_I_Rep_2 6 542.7849731445312 2 542.785296 1083.55604 NaN NaN NaN NaN NaN NaN NaN 31.798 1 35.439 34.939 35.939 3.641 0 0 0 0.53105 1 4829 4829 2.9952 0 1 + 998 29312 629 630 1286 1286 0.017602337466996687 ALNQIKLVS 9 Unmodified _ALNQIKLVS_ 0 0 0 REV__AluSg_dup8397|chr4:39712420-39712719:-|1.1597320082354354|0.0083273141832638|7.12|151.0|7|3|sense REV__AluSg_dup8397|chr4:39712420-39712719:-|1.1597320082354354|0.0083273141832638|7.12|151.0|7|3|sense MSMS UPN47_class_I_Rep_2 3 493.3060607910156 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 64.055 1 67.311 66.811 67.811 3.2556 0 0 0 0.38784 1 15234 15234 3.5965 0 1 + 999 17099 630 631 1287 1287 0.10386619856990364 ALNQIKLVS 9 Unmodified _ALNQIKLVS_ 0 0 0 REV__AluSg_dup8397|chr4:39712420-39712719:-|1.1597320082354354|0.0083273141832638|7.12|151.0|7|3|sense REV__AluSg_dup8397|chr4:39712420-39712719:-|1.1597320082354354|0.0083273141832638|7.12|151.0|7|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.3056335449219 2 493.305667 984.596781 0.19817 9.776E-05 1.3707 0.00067619 1.5689 0.00077395 493.30568202408597 63.995 0.53197 67.169 67.015 67.547 3.1741 61 38 3 0 0 0 0.47197 1 15345 15345 3.5965 0.31518 1 95045 + 1000 17099 630 631 1288 1288 0.10386619856990364 ALNRAIVP 8 Unmodified _ALNRAIVP_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C MSMS UPN47_class_I_Rep_2 3 427.2643127441406 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 54.403 1 57.722 57.222 58.222 3.3187 0 0 0 0.39624 1 12297 12297 9.3474 0 1 + 1001 31991 631 632 1289 1289 0.08597812342554789 ALPAEKLYK 9 Unmodified _ALPAEKLYK_ 0 0 0 REV__ENSG00000171612|ENST00000302692|SLC25A33 REV__ENSG00000171612|ENST00000302692|SLC25A33 MSMS UPN46_class_I_Rep_3 1 516.8158569335938 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 96.61 1 96.61 96.11 97.11 0 0 0 0 0.39518 1 23494 23494 1.8442 0.19162 1 + 1002 20415 632 633 1290 1290 0.08699503999741864 ALPAPPRAR 9 Unmodified _ALPAPPRAR_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MSMS UPN47_class_I_Rep_1 2 474.7905578613281 2 474.790518 947.566484 0.23416 0.00011118 0.15759 7.4822E-05 0.39175 0.000186 474.7904881010547 107.8 0.19978 111.47 111.39 111.59 3.6724 45 13 4 0 0 0 0.33654 1 26407 26407 11.64 11.64 1 96541000 + 1003 32049 633 634 1291 1291 0.09060305982461614 ALPAPPRAR 9 Unmodified _ALPAPPRAR_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MSMS UPN47_class_I_Rep_3 4 474.7908630371094 2 474.790518 947.566484 0.0889 4.2209E-05 0.32742 0.00015546 0.41632 0.00019767 474.79054685157877 107.79 0.17438 111.33 111.26 111.44 3.5382 66 20 4 0 0 0 0.25207 1 26311 26311 16.942 1.0951 1 85524000 + 1004 32049 633 634 1292 1292 0.09060305982461614 ALPAPPRAR 9 Unmodified _ALPAPPRAR_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MSMS UPN48_class_I_Rep_1 5 474.7906494140625 2 474.790518 947.566484 0.095955 4.5559E-05 0.040787 1.9365E-05 0.13674 6.4924E-05 474.79046563399055 107.79 0.48912 111.43 111.32 111.81 3.6313 110 44 5 0 0 0 0.32219 2 26029 26029;26086 12.532 3.9383 1 190650000 + 1005 32049 633 634 1293;1294 1293 0.09060305982461614 ALPAPPRAR 9 Unmodified _ALPAPPRAR_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MSMS UPN48_class_I_Rep_3 7 474.7913818359375 2 474.790518 947.566484 0.21191 0.00010061 -0.11453 -5.4378E-05 0.097376 4.6233E-05 474.7903681946862 107.78 0.27821 111.46 111.38 111.66 3.6813 74 29 4 0 0 0 0.33654 2 25421 25421;25497 11.64 11.64 1 169080000 + 1006 32049 633 634 1295;1296 1295 0.09060305982461614 ALPAPPRAR 9 Unmodified _ALPAPPRAR_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 474.790518 947.566484 0.30612 0.00014534 -1.2203 -0.00057938 -0.91415 -0.00043403 474.7908771708081 108.11 0.23981 111.64 111.57 111.8 3.5333 0.14892 -0.0012511 NaN 16.942 31 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1202200 + 1007 32049 633 634 0.09060305982461614 ALPAPPRAR 9 Unmodified _ALPAPPRAR_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 474.790518 947.566484 0.21956 0.00010424 0.050029 2.3753E-05 0.26958 0.000128 474.7906491156641 107.91 0.035278 111.58 111.55 111.59 3.6746 0.094239 -4.4809E-05 NaN 16.942 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1121200 + 1008 32049 633 634 0.09060305982461614 ALPDTLKVTY 10 Unmodified _ALPDTLKVTY_ 0 0 0 ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF ENSG00000160255|ENST00000652462|ITGB2 ENSG00000160255|ENST00000652462|ITGB2 MULTI-MSMS UPN46_class_I_Rep_3 1 560.8162841796875 2 560.816064 1119.61758 0.36308 0.00020362 0.033249 1.8647E-05 0.39633 0.00022227 560.8159793539237 60.467 0.30076 60.467 60.337 60.638 0 52 37 2 0 0 0 0.51021 1 13426 13426 10.8 3.1906 1 276440 1009 3862 634 635 1297 1297 0.06255165445986677 ALPEIFTEL 9 Unmodified _ALPEIFTEL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MSMS UPN47_class_I_Rep_1 2 516.7847290039062 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 87.924 1 91.581 91.081 92.081 3.6563 0 0 0 0.31276 1 21981 21981 10.074 2.7847 1 1010 2674 635 636 1298 1298 0.039398050088948366 ALPFAYRY 8 Unmodified _ALPFAYRY_ 0 0 0 REV__L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|64|3|anti-sense REV__L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|64|3|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7663269042969 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 113.3 1 116.81 116.31 117.31 3.5098 0 0 0 0.40738 1 27786 27786 0.79363 0 1 + 1011 26006 636 637 1299 1299 0.018023926226987896 ALPFAYRY 8 Unmodified _ALPFAYRY_ 0 0 0 REV__L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|64|3|anti-sense REV__L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|64|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7658996582031 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 24.41 1 28.049 27.549 28.549 3.6397 0 0 0 0.40604 1 2827 2827 2.5775 0 1 + 1012 26006 636 637 1300 1300 0.018023926226987896 ALPKAAKLM 9 Unmodified _ALPKAAKLM_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|51|2|sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|51|2|sense MSMS UPN47_class_I_Rep_2 3 471.7947998046875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 27.726 1 31.225 30.725 31.725 3.4986 0 0 0 0.39518 1 4205 4205 1.8442 0 1 + 1013 31506 637 638 1301 1301 0.1000848281881872 ALPKDIRNVKV 11 Unmodified _ALPKDIRNVKV_ 0 0 0 REV__L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|12|1|sense REV__L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|12|1|sense MSMS UPN47_class_I_Rep_2 3 626.8892211914062 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.39 1 108.92 108.42 109.42 3.5327 0 0 0 0.38417 1 25565 25565 4.897 0 1 + 1014 25819 638 639 1302 1302 0.15049316139516122 ALPLLAQLQEV 11 Unmodified _ALPLLAQLQEV_ 0 0 0 REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF MSMS UPN48_class_I_Rep_3 7 597.8565673828125 2 597.858264 1193.70197 NaN NaN NaN NaN NaN NaN NaN 84.572 1 88.321 87.821 88.821 3.7494 0 0 0 0.38417 1 20067 20067 1.1933 0.50296 1 + 1015 19872 639 640 1303 1303 0.11287116262769814 ALPLSTYLL 9 Unmodified _ALPLSTYLL_ 0 0 0 ENST00000474704.1_1_17:27041793-27042009:-|nuORF ENST00000474704.1_1_17:27041793-27042009:-|nuORF ENST00000474704.1_1_17:27041793-27042009:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.7804870605469 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 82.931 1 86.268 85.768 86.768 3.337 0 0 0 0.38299 1 20792 20792 4.756 2.1785 1 1016 6952 640 641 1304 1304 0.0845269925117691 ALPQLMPPKR 10 Unmodified _ALPQLMPPKR_ 0 0 0 REV__ENSG00000178921|ENST00000314666|PFAS REV__ENSG00000178921|ENST00000314666|PFAS MSMS UPN48_class_I_Rep_3 7 575.8430786132812 2 575.841894 1149.66923 NaN NaN NaN NaN NaN NaN NaN 84.107 1 87.835 87.335 88.335 3.7281 0 0 0 0.53105 1 19956 19956 1.6526 0 1 + 1017 20661 641 642 1305 1305 0.10038630658914371 ALPRTIALSR 10 Unmodified _ALPRTIALSR_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MULTI-MSMS UPN47_class_I_Rep_1 2 549.8455200195312 2 549.343115 1096.67168 0.5386 0.00029588 0.25512 0.00014015 0.79372 0.00043603 549.3431070277119 107.86 0.13918 111.53 111.44 111.58 3.6724 22 8 4 0 0 0 0.43106 1 26439 26439 17.113 3.2068 1 34997000 + 1018 18403 642 643 1306 1306 0.1272080238820763 ALPRTIALSR 10 Unmodified _ALPRTIALSR_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MULTI-MSMS UPN47_class_I_Rep_3 4 549.3433227539062 2 549.343115 1096.67168 0.49688 0.00027296 0.2272 0.00012481 0.72408 0.00039777 549.3430620421321 107.86 0.13373 111.4 111.33 111.46 3.5382 32 13 4 0 0 0 0.4965 1 26364 26364 12.241 2.8575 1 27366000 + 1019 18403 642 643 1307 1307 0.1272080238820763 ALPRTIALSR 10 Unmodified _ALPRTIALSR_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 549.343115 1096.67168 0.61776 0.00033936 -0.15782 -8.6699E-05 0.45994 0.00025266 549.3428455706813 107.85 0.136 111.39 111.34 111.48 3.5345 -0.11271 -0.00042498 NaN 17.113 39 14 4 NaN NaN NaN NaN 0 NaN NaN 0 22743000 + 1020 18403 642 643 0.1272080238820763 ALPRTIALSR 10 Unmodified _ALPRTIALSR_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 549.343115 1096.67168 0.46734 0.00025673 0.35911 0.00019727 0.82645 0.000454 549.3431739468283 107.86 0.4623 111.49 111.41 111.87 3.6313 -0.010397 0.00014296 NaN 17.113 75 38 3 NaN NaN NaN NaN 0 NaN NaN 0 56114000 + 1021 18403 642 643 0.1272080238820763 ALPRTIALSR 10 Unmodified _ALPRTIALSR_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 549.343115 1096.67168 0.48954 0.00026893 0.18253 0.00010027 0.67207 0.0003692 549.3430382430375 107.81 0.12318 111.49 111.43 111.56 3.6783 -0.013145 -5.104E-05 NaN 17.113 28 10 3 NaN NaN NaN NaN 0 NaN NaN 0 62534000 + 1022 18403 642 643 0.1272080238820763 ALPRTIALSR 10 Unmodified _ALPRTIALSR_ 0 0 0 REV__nc|ENSG00000109163|P30968-2|GNRHR REV__nc|ENSG00000109163|P30968-2|GNRHR MULTI-MATCH UPN48_class_I_Rep_3 7 2 549.343115 1096.67168 0.42637 0.00023422 -1.0139 -0.00055696 -0.58749 -0.00032274 549.3419901260688 108.03 0.080879 111.71 111.67 111.75 3.6813 0.21286 -0.0013655 NaN 17.113 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 595880 + 1023 18403 642 643 0.1272080238820763 ALPVTTLHNTV 11 Unmodified _ALPVTTLHNTV_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB nc|ENSG00000186260|Q9ULH7-4|MRTFB nc|ENSG00000186260|Q9ULH7-4|MRTFB MSMS UPN47_class_I_Rep_2 3 583.332763671875 2 583.332413 1164.65027 NaN NaN NaN NaN NaN NaN NaN 88.504 1 91.956 91.456 92.456 3.4525 0 0 0 0.38417 1 22007 22007 1.1933 0 1 1024 5150 643 644 1308 1308 0.07453372568852501 ALQDPVQFY 9 Unmodified _ALQDPVQFY_ 0 0 0 REV__ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|66|2|anti-sense REV__ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|66|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.7711181640625 2 540.771657 1079.52876 0.41356 0.00022364 -0.049834 -2.6949E-05 0.36373 0.00019669 540.7715592423566 77.079 0.6363 80.589 80.29 80.926 3.5102 109 62 2 0 0 0 0.23293 2 18282 18282;18361 18.146 5.6148 1 267190 + 1025 23281 644 645 1309;1310 1309 -0.007822497936558648 ALQEASEAY 9 Unmodified _ALQEASEAY_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2 ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN46_class_I_Rep_3 1 491.23004150390625 2 491.229822 980.445091 0.2425 0.00011912 0.19442 9.5507E-05 0.43692 0.00021463 491.229915831801 39.333 0.51433 39.333 39.128 39.642 0 72 48 2 0 0 0 0.066364 3 7568 7508;7530;7568 41.956 18.807 1 235050 1026 2758 645 646 1311;1312;1313 1313 -0.04591405961377859 ALQEPPATSHG 11 Unmodified _ALQEPPATSHG_ 0 0 0 MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|38|1|anti-sense MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|38|1|anti-sense MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_2 3 554.3162231445312 2 554.275095 1106.53564 NaN NaN NaN NaN NaN NaN NaN 41.336 1 44.702 44.202 45.202 3.3655 0 0 0 0.38417 1 8321 8321 2.4985 0.65425 1 1027 15889 646 647 1314 1314 -0.013369369131169151 ALQPGRQAQ 9 Unmodified _ALQPGRQAQ_ 0 0 0 AluSz_dup70897|chr12:132823801-132824112:+|1.0141979513287698|0.1827241604591052|2.47|151.0|5|2|sense AluSz_dup70897|chr12:132823801-132824112:+|1.0141979513287698|0.1827241604591052|2.47|151.0|5|2|sense AluSz_dup70897|chr12:132823801-132824112:+|1.0141979513287698|0.1827241604591052|2.47|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.7666931152344 2 484.76724 967.519927 0.2476 0.00012003 -1.1612 -0.00056291 -0.91358 -0.00044288 484.76709700816303 94.033 0.166 97.809 97.724 97.89 3.7761 31 22 2 0 0 0 0.48846 1 22357 22357 1.8442 0 1 83216 1028 362 647 648 1315 1315 0.03486821360513659 ALRDVRQQY 9 Unmodified _ALRDVRQQY_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN46_class_I_Rep_3 1 574.8124389648438 2 574.812179 1147.60981 0.22994 0.00013217 -0.13373 -7.6868E-05 0.096217 5.5307E-05 574.8120957012337 29.959 0.8632 29.959 29.641 30.504 0 160 71 3 0 0 0 0.0073203 4 4787 4748;4787;4830;4866 71.708 38.922 1 252830 1029 824 648 649 1316;1317;1318;1319 1317 0.04190450969099402 ALRGLPLFPAT 11 Unmodified _ALRGLPLFPAT_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45744937-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 579.3617553710938 2 578.347866 1154.68118 0.50408 0.00029153 -0.80805 -0.00046734 -0.30397 -0.0001758 578.3468546638717 109.62 0.30299 109.62 109.54 109.85 0 55 26 3 0 0 0 0.59712 1 26936 26936 5.2969 0 1 1911200 1030 7091 649 650 1320 1320 0.11002570673736045 ALRGSALLL 9 Unmodified _ALRGSALLL_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.2947082519531 2 457.295102 912.575651 0.13414 6.1339E-05 -0.13486 -6.1673E-05 -0.00072921 -3.3346E-07 457.29502352287494 57.359 0.87638 60.853 60.469 61.345 3.4942 127 75 3 0 0 0 0.23293 1 12350 12350 18.146 2.2992 1 494010 1031 16558 650 651 1321 1321 0.11586654548136721 ALRKWFYR 8 Unmodified _ALRKWFYR_ 0 0 0 REV__MLT2B3_dup1456|chr6:166376191-166376674:-|1.17219142652428|0.2881709780396537|2.02|151.0|1|1|sense REV__MLT2B3_dup1456|chr6:166376191-166376674:-|1.17219142652428|0.2881709780396537|2.02|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 570.326904296875 2 570.327268 1138.63998 NaN NaN NaN NaN NaN NaN NaN 40.47 1 43.974 43.474 44.474 3.5048 0 0 0 0.40746 1 7266 7266 0.69038 0 1 + 1032 31818 651 652 1322 1322 0.07620854424931167 ALRRCMLL 8 Unmodified _ALRRCMLL_ 0 0 0 REV__Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|56|1|anti-sense REV__Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|56|1|anti-sense MSMS UPN47_class_I_Rep_1 2 488.2853698730469 2 488.283157 974.551762 NaN NaN NaN NaN NaN NaN NaN 81.596 1 85.108 84.608 85.608 3.5122 0 0 0 0.40604 1 20364 20364 2.5775 1.7838 1 + 1033 32693 652 653 1323 1323 0.06346774518465281 ALRSNQGKI 9 Unmodified _ALRSNQGKI_ 0 0 0 REV__L1ME3A_dup3283|chr3:125255547-125256092:-|1.1745010425945797|0.0335625677695117|5.13|151.0|30|2|anti-sense REV__L1ME3A_dup3283|chr3:125255547-125256092:-|1.1745010425945797|0.0335625677695117|5.13|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_1 2 493.79766845703125 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 55.244 1 58.723 58.223 59.223 3.4785 0 0 0 0.17222 1 12524 12524 18.146 3.3081 1 + 1034 28012 653 654 1324 1324 0.07351680911676794 ALRSYSTVN 9 Unmodified _ALRSYSTVN_ 0 0 0 REV__ENSG00000182308|ENST00000333141|DCAF4L1 REV__ENSG00000182308|ENST00000333141|DCAF4L1 MULTI-MSMS UPN48_class_I_Rep_1 5 505.76629638671875 2 505.766906 1009.51926 0.20924 0.00010582 -0.23559 -0.00011915 -0.026356 -1.333E-05 505.76667065184387 46.211 0.98137 49.731 49.337 50.318 3.5192 143 65 3 0 0 0 0.41587 1 8903 8903 7.1017 1.8048 1 489660 + 1035 20753 654 655 1325 1325 0.014879819208090339 ALRWLGRYY 9 Unmodified _ALRWLGRYY_ 0 0 0 ENSG00000110169|ENST00000265983|HPX ENSG00000110169|ENST00000265983|HPX ENSG00000110169|ENST00000265983|HPX MULTI-MSMS UPN48_class_I_Rep_2 6 599.3291015625 2 599.330008 1196.64546 0.58544 0.00035087 -0.56536 -0.00033883 0.020087 1.2039E-05 599.3291866741263 57.694 1.0324 61.208 60.738 61.771 3.5142 157 76 3 0 0 0 0.48846 1 12422 12422 1.8442 0.19162 1 274630 1036 1931 655 656 1326 1326 0.0550053321676387 ALSALTARL 9 Unmodified _ALSALTARL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN47_class_I_Rep_3 4 458.2846374511719 2 458.284734 914.554916 -0.067244 -3.0817E-05 -0.96686 -0.0004431 -1.0341 -0.00047391 458.2847330245572 51.765 1.0307 54.971 54.541 55.571 3.2055 97 58 2 0 0 0 0.0094161 1 11584 11584 70.332 22.583 1 262120 1037 2259 656 657 1327 1327 0.09422064168461475 ALSALTARL 9 Unmodified _ALSALTARL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 458.284734 914.554916 -0.029066 -1.332E-05 -0.97263 -0.00044574 -1.0017 -0.00045906 458.2847272545456 51.294 0.99542 54.887 54.428 55.424 3.5932 -0.062205 7.8492E-06 NaN 70.332 84 48 2 NaN NaN NaN NaN 0 NaN NaN 0 218490 1038 2259 656 657 0.09422064168461475 ALSALTARL 9 Unmodified _ALSALTARL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 458.284734 914.554916 -0.0027003 -1.2375E-06 -1.0071 -0.00046154 -1.0098 -0.00046277 458.2847211030911 51.655 0.89352 54.989 54.613 55.507 3.3346 0.0404 -2.3743E-05 NaN 70.332 80 44 2 NaN NaN NaN NaN 0 NaN NaN 0 255110 1039 2259 656 657 0.09422064168461475 ALSCEYEC 8 Unmodified _ALSCEYEC_ 0 0 0 nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B nc|ENSG00000171262|Q52LJ0-1|FAM98B MSMS UPN46_class_I_Rep_3 1 459.1717834472656 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 31.837 1 31.837 31.337 32.337 0 0 0 0 0.40746 1 5371 5371 0.69038 0.69038 1 1040 4514 657 658 1328 1328 -0.1308575503933298 ALSDALIHI 9 Unmodified _ALSDALIHI_ 0 0 0 REV__Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|159|3|anti-sense REV__Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|159|3|anti-sense MSMS UPN47_class_I_Rep_3 4 476.776611328125 2 476.776742 951.538931 NaN NaN NaN NaN NaN NaN NaN 63.489 1 66.659 66.159 67.159 3.1698 0 0 0 0.39428 1 15121 15121 2.0598 0 1 + 1041 32483 658 659 1329 1329 0.06122357931565148 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN46_class_I_Rep_3 1 534.7774658203125 2 534.777274 1067.53999 0.31117 0.00016641 0.033898 1.8128E-05 0.34507 0.00018454 534.7771981635989 45.727 0.328 45.727 45.455 45.783 0 76 32 3 0 0 0 0.016629 1 9331 9331 101.72 63.571 1 1094900 1042 3556 659 660 1330 1330 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN46_class_I_Rep_3 1 534.7772216796875 2 534.777274 1067.53999 0.3098 0.00016567 -0.06348 -3.3948E-05 0.24631 0.00013172 534.7771458719542 45.885 0.47201 45.885 45.757 46.229 0 127 50 3 0 0 0 0.0069768 2 9367 9367;9400 117.6 79.448 1 828090 1043 3556 659 660 1331;1332 1331 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN46_class_I_Rep_3 1 534.77734375 2 534.777274 1067.53999 0.30761 0.0001645 -0.27314 -0.00014607 0.034474 1.8436E-05 534.7770060892235 46.281 0.12397 46.281 46.229 46.353 0 20 13 2 0 0 0 0.090595 1 9474 9474 36.044 17.909 1 149100 1044 3556 659 660 1333 1333 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MATCH UPN47_class_I_Rep_1 2 2 534.777274 1067.53999 0.022265 1.1907E-05 -0.70748 -0.00037834 -0.68521 -0.00036644 534.7763056725177 42.77 0.090256 46.457 46.424 46.514 3.6875 0.14131 -0.00053486 NaN 36.044 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 28640 1045 3556 659 660 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MATCH UPN47_class_I_Rep_3 4 2 534.777274 1067.53999 0.083574 4.4693E-05 0.042107 2.2518E-05 0.12568 6.7211E-05 534.7776070763326 42.97 0.14363 46.209 46.128 46.272 3.2394 -0.10657 0.00026686 NaN 36.044 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 51627 1046 3556 659 660 0.008925723004722386 ALSEQILMV 9 Oxidation (M) _ALSEQILM(Oxidation (M))V_ ALSEQILM(1)V ALSEQILM(73)V 0 0 1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS UPN47_class_I_Rep_1 2 510.2757873535156 2 510.275718 1018.53688 0.202 0.00010308 -0.015758 -8.0408E-06 0.18625 9.5037E-05 510.27561984361415 66.087 0.90971 69.444 69.139 70.048 3.3576 148 60 3 0 0 0 0.006828 3 15796 15796;15834;15871 72.968 16.791 1 375600 1047 4891 660 661 1334;1335;1336 1334 155 0.028355611314623275 ALSEQILMV 9 Oxidation (M) _ALSEQILM(Oxidation (M))V_ ALSEQILM(1)V ALSEQILM(73)V 0 0 1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.27569580078125 2 510.275718 1018.53688 0.064291 3.2806E-05 0.27295 0.00013928 0.33724 0.00017209 510.27573138957035 66.41 0.85909 69.669 69.277 70.136 3.2588 137 55 3 0 0 0 0.006828 3 15942 15900;15942;15984 72.968 17.249 1 445170 1048 4891 660 661 1337;1338;1339 1338 155 0.028355611314623275 ALSEQILMV 9 Oxidation (M) _ALSEQILM(Oxidation (M))V_ ALSEQILM(1)V ALSEQILM(93)V 0 0 1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS UPN47_class_I_Rep_3 4 510.27581787109375 2 510.275718 1018.53688 0.25792 0.00013161 -0.063331 -3.2316E-05 0.19459 9.9295E-05 510.27560305438357 66.352 1.0416 69.537 69.167 70.208 3.1853 166 78 3 0 0 0 0.0051925 3 16036 15961;15998;16036 92.653 27.418 1 499310 1049 4891 660 661 1340;1341;1342 1342 155 0.028355611314623275 ALSFEFRQF 9 Unmodified _ALSFEFRQF_ 0 0 0 REV__L1PA12_dup161|chr2:95832274-95832363:-|1.2398178549776038|0.1161379353708761|3.42|151.0|3|2|sense REV__L1PA12_dup161|chr2:95832274-95832363:-|1.2398178549776038|0.1161379353708761|3.42|151.0|3|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 572.7921752929688 2 572.792924 1143.57129 0.52717 0.00030196 -0.67918 -0.00038903 -0.15202 -8.7074E-05 572.792529820199 70.496 0.7744 74.015 73.734 74.508 3.5185 149 80 3 0 0 0 0.41259 1 16269 16269 7.2892 2.5332 1 236550 + 1050 29058 661 662 1343 1343 0.005251453345636037 ALSGLAVRL 9 Unmodified _ALSGLAVRL_ 0 0 0 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3;ENSG00000196972|ENST00000433425|SMIM10L2B;ENSG00000178947|ENST00000417443|SMIM10L2A;ENST00000533877.1_1_7:6381544-6388389:-|nuORF;ENSG00000184785|ENST00000330288|SMIM10 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3 MULTI-MSMS UPN47_class_I_Rep_1 2 450.28692626953125 2 450.287277 898.560001 0.030544 1.3754E-05 -0.43521 -0.00019597 -0.40466 -0.00018221 450.28702514566766 55.826 0.61201 59.304 59.019 59.631 3.4785 57 36 2 0 0 0 0.043452 3 12713 12658;12713;12776 51.63 5.9302 1 132780 1051 4837 662 663 1344;1345;1346 1345 0.10666368031081674 ALSGLAVRL 9 Unmodified _ALSGLAVRL_ 0 0 0 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3;ENSG00000196972|ENST00000433425|SMIM10L2B;ENSG00000178947|ENST00000417443|SMIM10L2A;ENST00000533877.1_1_7:6381544-6388389:-|nuORF;ENSG00000184785|ENST00000330288|SMIM10 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3 MULTI-MSMS UPN47_class_I_Rep_2 3 450.286865234375 2 450.287277 898.560001 -0.084452 -3.8028E-05 -0.44555 -0.00020063 -0.53 -0.00023865 450.2869611314747 56.172 0.68958 59.473 59.11 59.8 3.3009 65 42 2 0 0 0 0.057664 3 12802 12802;12843;12880 45.7 5.7499 1 119790 1052 4837 662 663 1347;1348;1349 1347 0.10666368031081674 ALSGLAVRL 9 Unmodified _ALSGLAVRL_ 0 0 0 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3;ENSG00000196972|ENST00000433425|SMIM10L2B;ENSG00000178947|ENST00000417443|SMIM10L2A;ENST00000533877.1_1_7:6381544-6388389:-|nuORF;ENSG00000184785|ENST00000330288|SMIM10 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3 nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3 MULTI-MSMS UPN47_class_I_Rep_3 4 450.7893371582031 2 450.287277 898.560001 -0.28282 -0.00012735 -0.1386 -6.2409E-05 -0.42142 -0.00018976 450.2870841761534 56.23 0.74873 59.402 59.098 59.847 3.1721 75 47 2 0 0 0 0.097406 4 12989 12875;12913;12973;12989 34.402 0 1 161310 1053 4837 662 663 1350;1351;1352;1353 1353 0.10666368031081674 ALSLEYTFSF 10 Unmodified _ALSLEYTFSF_ 0 0 0 REV__L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|353|3|anti-sense REV__L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|353|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.2928466796875 2 589.292422 1176.57029 0.37556 0.00022131 1.5159 0.00089331 1.8915 0.0011146 589.2931340889122 54.806 0.90049 58.376 57.937 58.837 3.5694 88 57 3 0 0 0 0.52083 1 11488 11488 9.3831 1.2276 1 176620 + 1054 29895 663 664 1354 1354 -0.010931138250271033 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3882446289062 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 106.11 1 109.82 109.32 110.32 3.7088 0 0 0 0.38417 1 26021 26021 2.7352 1.4057 1 1055 13231 664 665 1355 1355 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3926391601562 2 626.389199 1250.76385 0.6346 0.0003975 -0.56152 -0.00035173 0.073073 4.5772E-05 626.8898603033304 104.13 0.077347 107.66 107.64 107.71 3.5289 18 11 2 0 0 0 0.50573 1 25303 25303 7.609 2.3121 1 27748000 1056 13231 664 665 1356 1356 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3867797851562 2 626.389199 1250.76385 0.42783 0.00026799 -1.8596 -0.0011648 -1.4317 -0.00089682 626.3883974310388 103.5 0.31724 107.12 106.84 107.16 3.6209 85 45 2 0 0 0 0.50573 1 24961 24961 7.609 1.8771 1 51252000 1057 13231 664 665 1357 1357 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.38720703125 2 626.389199 1250.76385 0.42787 0.00026801 -2.123 -0.0013299 -1.6952 -0.0010618 626.8890218634626 104.39 0.41526 108.02 107.94 108.36 3.6247 88 59 2 0 0 0 0.59712 1 25168 25168 5.2969 2.0156 1 63602000 1058 13231 664 665 1358 1358 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3859252929688 2 626.389199 1250.76385 0.42783 0.00026799 -1.2869 -0.00080613 -0.85912 -0.00053814 626.3887012251098 105.79 0.14785 109.42 109.32 109.47 3.6277 32 19 2 0 0 0 0.65559 1 25466 25466 2.7352 0.23671 1 229780 1059 13231 664 665 1359 1359 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3882446289062 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.69 1 107.31 106.81 107.81 3.6209 0 0 0 0.35398 1 24998 24998 8.7454 3.0136 1 1060 13231 664 665 1360 1360 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MSMS UPN48_class_I_Rep_1 5 626.389892578125 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.87 1 108.5 108 109 3.6247 0 0 0 0.38417 1 25268 25268 5.2969 0.39987 1 1061 13231 664 665 1361 1361 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3895874023438 2 626.389199 1250.76385 0.49473 0.0003099 -1.3952 -0.00087393 -0.90046 -0.00056404 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.4608 1 24475 24475 8.7454 3.0136 1 107270000 1062 13231 664 665 1362 1362 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 626.389199 1250.76385 0.55628 0.00034845 -0.38403 -0.00024055 0.17225 0.0001079 626.3898430429466 104.07 0.10466 107.83 107.79 107.89 3.7627 0.12784 0.00056098 NaN 7.609 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 26044000 1063 13231 664 665 0.14849467681892747 ALSLVIFFTLK 11 Unmodified _ALSLVIFFTLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|29|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 626.389199 1250.76385 0.51243 0.00032098 -1.3117 -0.00082163 -0.79927 -0.00050065 626.8891637048349 104 0.10898 107.52 107.49 107.6 3.5205 -0.18034 -0.00060119 NaN 7.609 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 44138000 1064 13231 664 665 0.14849467681892747 ALSNLEVKL 9 Unmodified _ALSNLEVKL_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN46_class_I_Rep_3 1 493.7974548339844 2 493.797675 985.580796 0.2302 0.00011367 -0.090368 -4.4623E-05 0.13984 6.9051E-05 493.79754076080485 61.042 0.22057 61.042 60.85 61.071 0 46 28 3 0 0 0 0.081756 1 13557 13557 38.176 3.7738 1 558920 1065 3550 665 666 1363 1363 0.08742913620085346 ALSNLEVKL 9 Unmodified _ALSNLEVKL_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-SECPEP UPN46_class_I_Rep_3 1 493.7980041503906 2 493.797675 985.580796 0.23125 0.00011419 -0.022966 -1.1341E-05 0.20829 0.00010285 493.7976043435753 61.321 0.27054 61.321 61.252 61.523 0 46 27 3 0 0 0 0.044231 1 13625 13625 45.74 11.338 1 719100 1066 3550 665 666 1364 1364 0.08742913620085346 ALSNLEVKL 9 Unmodified _ALSNLEVKL_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-SECPEP UPN46_class_I_Rep_3 1 493.79766845703125 2 493.797675 985.580796 0.23061 0.00011387 0.3262 0.00016108 0.55681 0.00027495 493.7977325482136 61.138 0.10099 61.138 61.062 61.163 0 33 12 3 0 0 0 3.3294999999999997E-21 1 13588 13588 107.1 37.995 1 957130 1067 3550 665 666 1365 1365 0.08742913620085346 ALSNLEVKL 9 Unmodified _ALSNLEVKL_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN47_class_I_Rep_1 2 493.7977294921875 2 493.797675 985.580796 0.10804 5.335E-05 0.18772 9.2694E-05 0.29576 0.00014604 493.79770582300563 54.725 1.1143 58.227 57.791 58.906 3.5014 171 65 4 0 0 0 0.0055493 6 12364 12281;12323;12364;12402;12440;12481 132.38 36.095 1 1018900 1068 3550 665 666 1366;1367;1368;1369;1370;1371 1368 0.08742913620085346 ALSNLEVKL 9 Unmodified _ALSNLEVKL_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN47_class_I_Rep_2 3 493.7977600097656 2 493.797675 985.580796 0.34697 0.00017133 -0.082956 -4.0964E-05 0.26402 0.00013037 493.79757620081125 54.85 1.2417 58.168 57.899 59.141 3.3187 156 69 3 0 0 0 0.0050147 5 12474 12432;12474;12513;12557;12598 107.1 35.474 1 699990 1069 3550 665 666 1372;1373;1374;1375;1376 1373 0.08742913620085346 ALSNLEVKL 9 Unmodified _ALSNLEVKL_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN47_class_I_Rep_3 4 493.7977294921875 2 493.797675 985.580796 0.20036 9.8939E-05 0.080369 3.9686E-05 0.28073 0.00013862 493.7976461210599 55.184 1.1607 58.362 57.922 59.083 3.1779 178 71 3 0 0 0 0.0050147 5 12527 12481;12527;12564;12605;12644 117.76 32.489 1 974830 1070 3550 665 666 1377;1378;1379;1380;1381 1378 0.08742913620085346 ALSQEDGNFIY 11 Unmodified _ALSQEDGNFIY_ 0 0 0 L1P3_dup345|chr2:135515299-135518720:-|1.2176934574362477|0.1207874357665839|3.33|151.0|183|3|anti-sense L1P3_dup345|chr2:135515299-135518720:-|1.2176934574362477|0.1207874357665839|3.33|151.0|183|3|anti-sense L1P3_dup345|chr2:135515299-135518720:-|1.2176934574362477|0.1207874357665839|3.33|151.0|183|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 629.2954711914062 2 628.793318 1255.57208 0.29465 0.00018528 -0.12444 -7.8249E-05 0.17021 0.00010703 628.7931817580369 46.86 0.5547 50.212 50.023 50.577 3.3515 63 41 2 0 0 0 0.66277 1 9991 9991 2.086 0.24177 1 85320 1071 13544 666 667 1382 1382 -0.0454810480703145 ALSRPLSKYIK 11 Unmodified _ALSRPLSKYIK_ 0 0 0 REV__nc|ENSG00000171109|Q8IWA4-3|MFN1 REV__nc|ENSG00000171109|Q8IWA4-3|MFN1 MULTI-SECPEP UPN47_class_I_Rep_1 2 638.9321899414062 2 638.392805 1274.77106 0.57183 0.00036505 -3.8976 -0.0024882 -3.3258 -0.0021232 638.3897755990299 108.26 0.30908 111.89 111.67 111.97 3.6355 39 30 2 0 0 0 22.551 1 26592 26592 4.897 0 1 4789700 + 1072 32058 667 668 1383 1383 0.1446620028232246 ALSTGDVVEV 10 Unmodified _ALSTGDVVEV_ 0 0 0 nc|ENSG00000158517|P14598-2|NCF1;ENST00000449343.6_1_7:74188378-74197664:+|nuORF;nc|ENSG00000165178|A8MVU1|NCF1C;ENSG00000158517|ENST00000289473|NCF1;nc|ENSG00000290838|A6NI72|NCF1B;ENST00000455062.2_1_7:74191691-74197664:+|nuORF;ENST00000398421.6_1_7:74191697-74197664:+|nuORF nc|ENSG00000158517|P14598-2|NCF1 nc|ENSG00000158517|P14598-2|NCF1 MSMS UPN48_class_I_Rep_3 7 495.2621765136719 2 495.261122 988.507691 NaN NaN NaN NaN NaN NaN NaN 100.33 1 104.18 103.68 104.68 3.8537 0 0 0 0.53105 1 23754 23754 6.2058 0.44535 1 1073 3802 668 669 1384 1384 0.012977401068155814 ALSTGDVVEV 10 Unmodified _ALSTGDVVEV_ 0 0 0 nc|ENSG00000158517|P14598-2|NCF1;ENST00000449343.6_1_7:74188378-74197664:+|nuORF;nc|ENSG00000165178|A8MVU1|NCF1C;ENSG00000158517|ENST00000289473|NCF1;nc|ENSG00000290838|A6NI72|NCF1B;ENST00000455062.2_1_7:74191691-74197664:+|nuORF;ENST00000398421.6_1_7:74191697-74197664:+|nuORF nc|ENSG00000158517|P14598-2|NCF1 nc|ENSG00000158517|P14598-2|NCF1 MSMS UPN48_class_I_Rep_3 7 495.26318359375 2 495.261122 988.507691 NaN NaN NaN NaN NaN NaN NaN 100.46 1 104.31 103.81 104.81 3.8537 0 0 0 0.53105 1 23782 23782 3.2813 0.70383 1 1074 3802 668 669 1385 1385 0.012977401068155814 ALSVMYSYLHS 11 Unmodified _ALSVMYSYLHS_ 0 0 0 ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12;ENST00000503498.1_1_3:129133914-129140362:-|nuORF ENST00000514900.5_1_3:129122974-129137267:-|nuORF ENST00000514900.5_1_3:129122974-129137267:-|nuORF MSMS UPN46_class_I_Rep_3 1 635.8101196289062 2 635.810456 1269.60636 NaN NaN NaN NaN NaN NaN NaN 30.319 1 30.319 29.819 30.819 0 0 0 0 0.38417 1 4920 4920 2.9952 0.71247 1 1075 4591 669 670 1386 1386 -0.017659799197872417 ALSVNVLPLNL 11 Unmodified _ALSVNVLPLNL_ 0 0 0 REV__ENST00000333188.9_1_3:139080076-139080115:-|nuORF REV__ENST00000333188.9_1_3:139080076-139080115:-|nuORF MSMS UPN46_class_I_Rep_3 1 576.851806640625 2 576.852981 1151.69141 NaN NaN NaN NaN NaN NaN NaN 107.64 1 107.64 107.14 108.14 0 0 0 0 0.36307 1 26258 26258 8.1555 1.4324 1 + 1076 21787 670 671 1387 1387 0.12163133608351018 ALTAAARLR 9 Unmodified _ALTAAARLR_ 0 0 0 ENST00000551731.1_1_22:51065464-51066207:-|nuORF ENST00000551731.1_1_22:51065464-51066207:-|nuORF ENST00000551731.1_1_22:51065464-51066207:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.29473876953125 2 471.795801 941.577048 -0.0052817 -2.4919E-06 -2.2901 -0.0010805 -2.2954 -0.001083 471.79558652139696 51.086 1.306 54.679 54.271 55.577 3.5932 171 65 4 0 0 0 0.33654 5 11249 11249;11263;11293;11314;11342 11.64 5.2862 1 2093000 1077 7401 671 672 1388;1389;1390;1391;1392 1388 0.1039228863688777 ALTEYTLYL 9 Unmodified _ALTEYTLYL_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS UPN47_class_I_Rep_3 4 544.2913208007812 2 543.789515 1085.56448 0.45211 0.00024585 -0.33932 -0.00018452 0.11279 6.1335E-05 543.7893498494765 78.776 0.37939 82.071 81.917 82.296 3.295 52 37 2 0 0 0 0.074367 1 19662 19662 39.957 3.9131 1 110480 1078 1936 672 673 1393 1393 0.02511787663343057 ALTEYTLYL 9 Unmodified _ALTEYTLYL_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MATCH UPN47_class_I_Rep_2 3 2 543.789515 1085.56448 0.45354 0.00024663 -0.0091937 -4.9994E-06 0.44435 0.00024163 543.7897334735703 78.643 0.17802 81.985 81.854 82.032 3.3428 0.0032081 8.469E-05 NaN 39.957 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 56743 1079 1936 672 673 0.02511787663343057 ALTKHHRKK 9 Unmodified _ALTKHHRKK_ 0 0 0 L1MD2_dup7529|chr11:11910095-11911448:+|3.478364220814578|0.2188827872911213|3.99|151.0|42|3|sense L1MD2_dup7529|chr11:11910095-11911448:+|3.478364220814578|0.2188827872911213|3.99|151.0|42|3|sense L1MD2_dup7529|chr11:11910095-11911448:+|3.478364220814578|0.2188827872911213|3.99|151.0|42|3|sense MSMS UPN48_class_I_Rep_3 7 560.2948608398438 2 559.848899 1117.68324 NaN NaN NaN NaN NaN NaN NaN 58.043 1 61.574 61.074 62.074 3.5317 0 0 0 0.3967 1 12542 12542 1.4819 0 1 1080 12030 673 674 1394 1394 0.1291104420222382 ALTLVHLERR 10 Unmodified _ALTLVHLERR_ 0 0 0 HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|71|3|sense HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|71|3|sense HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|71|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 604.366943359375 2 604.367121 1206.71969 0.59956 0.00036236 -0.62737 -0.00037916 -0.027814 -1.681E-05 604.3666300753738 100.66 0.22706 100.66 100.48 100.71 0 37 22 3 0 0 0 0.56033 1 24542 24542 3.5965 0.31518 1 2214700 1081 8169 674 675 1395 1395 0.12459876308253115 ALTLVHLERR 10 Unmodified _ALTLVHLERR_ 0 0 0 HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|71|3|sense HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|71|3|sense HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|71|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 604.367121 1206.71969 0.59956 0.00036236 -0.62737 -0.00037916 -0.027814 -1.681E-05 604.3666300753738 100.66 0.22706 100.66 100.48 100.71 0 0.0075859 -0.0002764 NaN 3.5965 37 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2214700 1082 8169 674 675 0.12459876308253115 ALTQNRAK 8 Unmodified _ALTQNRAK_ 0 0 0 REV__nc|ENSG00000166435|Q6P2D8-3|XRRA1 REV__nc|ENSG00000166435|Q6P2D8-3|XRRA1 MSMS UPN47_class_I_Rep_3 4 451.271240234375 2 451.264333 900.514114 NaN NaN NaN NaN NaN NaN NaN 50.3 1 53.526 53.026 54.026 3.2262 0 0 0 0.3903 1 11100 11100 11.64 0.52583 1 + 1083 20174 675 676 1396 1396 0.05987722848840349 ALTSLELEL 9 Unmodified _ALTSLELEL_ 0 0 0 ENSG00000179862|ENST00000372638|CITED4 ENSG00000179862|ENST00000372638|CITED4 ENSG00000179862|ENST00000372638|CITED4 MULTI-MSMS UPN47_class_I_Rep_3 4 494.781982421875 2 494.78169 987.548827 0.23894 0.00011823 0.10981 5.4334E-05 0.34876 0.00017256 494.7816243418545 78.964 0.5574 82.259 81.998 82.555 3.295 79 51 2 0 0 0 0.15122 2 19701 19701;19737 25.399 4.9457 1 146270 1084 4871 676 677 1397;1398 1397 0.0545550114627531 ALTSLELEL 9 Unmodified _ALTSLELEL_ 0 0 0 ENSG00000179862|ENST00000372638|CITED4 ENSG00000179862|ENST00000372638|CITED4 ENSG00000179862|ENST00000372638|CITED4 MULTI-MATCH UPN47_class_I_Rep_2 3 2 494.78169 987.548827 0.31255 0.00015464 -0.31623 -0.00015646 -0.0036804 -1.821E-06 494.7815914347882 78.871 0.060387 82.226 82.194 82.255 3.3554 -0.016661 -0.00037458 NaN 25.399 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 52556 1085 4871 676 677 0.0545550114627531 ALVAASLSVP 10 Unmodified _ALVAASLSVP_ 0 0 0 REV__ENST00000270139.7_1_21:34728337-34728493:+|nuORF REV__ENST00000270139.7_1_21:34728337-34728493:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 464.27838134765625 2 464.279118 926.543683 0.16958 7.8733E-05 0.017531 8.1392E-06 0.18711 8.6872E-05 464.2790363737983 50.1 0.66054 50.1 49.683 50.343 0 147 74 3 0 0 0 0.33585 1 10483 10483 25.399 6.0374 1 1116800 + 1086 21607 677 678 1399 1399 0.07747242074322003 ALVAASLSVP 10 Unmodified _ALVAASLSVP_ 0 0 0 REV__ENST00000270139.7_1_21:34728337-34728493:+|nuORF REV__ENST00000270139.7_1_21:34728337-34728493:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 464.27838134765625 2 464.279118 926.543683 -0.28594 -0.00013276 -0.25613 -0.00011892 -0.54208 -0.00025168 464.27887250208465 45.521 0.81778 48.765 48.358 49.176 3.2441 92 49 2 0 0 0 0.47413 1 9720 9720 13.906 0.86358 1 261610 + 1087 21607 677 678 1400 1400 0.07747242074322003 ALVDHVAEL 9 Unmodified _ALVDHVAEL_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;ENST00000463516.5_1_7:45009010-45014805:-|nuORF;ENST00000480503.5_1_7:45008844-45011824:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN47_class_I_Rep_1 2 483.76605224609375 2 483.766374 965.518196 -0.00013206 -6.3884E-08 0.0038741 1.8741E-06 0.003742 1.8103E-06 483.76629583088646 50.45 0.62983 54.079 53.803 54.433 3.6285 42 28 2 0 0 0 0.35081 1 11026 11026 10.824 3.5347 1 135690 1088 2964 678 679 1401 1401 0.03405767551907957 ALVDHVAEL 9 Unmodified _ALVDHVAEL_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;ENST00000463516.5_1_7:45009010-45014805:-|nuORF;ENST00000480503.5_1_7:45008844-45011824:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN47_class_I_Rep_3 4 483.7667541503906 2 483.766374 965.518196 0.20988 0.00010153 -0.18068 -8.7408E-05 0.029198 1.4125E-05 483.7662989701309 50.922 0.68162 54.138 53.789 54.47 3.2163 58 34 2 0 0 0 0.42249 1 11247 11247 6.7232 2.7788 1 130590 1089 2964 678 679 1402 1402 0.03405767551907957 ALVPDKRE 8 Unmodified _ALVPDKRE_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|58|2|sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|58|2|sense MSMS UPN47_class_I_Rep_2 3 464.2782897949219 2 464.266542 926.51853 NaN NaN NaN NaN NaN NaN NaN 45.252 1 48.606 48.106 49.106 3.3534 0 0 0 0.39624 1 9518 9518 9.3474 0.75416 1 + 1090 24957 679 680 1403 1403 0.052331872717559236 ALVSLNARN 9 Unmodified _ALVSLNARN_ 0 0 0 ENST00000547912.1_1_12:56676669-56677589:-|nuORF ENST00000547912.1_1_12:56676669-56677589:-|nuORF ENST00000547912.1_1_12:56676669-56677589:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 479.2772216796875 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.41259 1 18640 18640 7.2892 1.5574 1 595600 1091 7389 680 681 1404 1404 0.060319920203255606 ALVSLNARN 9 Unmodified _ALVSLNARN_ 0 0 0 ENST00000547912.1_1_12:56676669-56677589:-|nuORF ENST00000547912.1_1_12:56676669-56677589:-|nuORF ENST00000547912.1_1_12:56676669-56677589:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 479.27752685546875 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.41259 1 18709 18709 7.2892 1.5574 1 542900 1092 7389 680 681 1405 1405 0.060319920203255606 ALVSSLHLL 9 Unmodified _ALVSSLHLL_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS UPN47_class_I_Rep_1 2 476.7950134277344 2 476.794935 951.575317 0.099516 4.7449E-05 -0.15588 -7.4321E-05 -0.05636 -2.6872E-05 476.7947580511396 64.789 0.44417 68.145 67.932 68.376 3.3557 59 36 2 0 0 0 0.15878 1 15386 15386 24.674 6.5389 1 64412 1093 4928 681 682 1406 1406 0.09759234828288754 ALVSSLHLL 9 Unmodified _ALVSSLHLL_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 476.794935 951.575317 0.077335 3.6873E-05 -0.9334 -0.00044504 -0.85606 -0.00040817 476.7944354350274 64.913 0.049866 68.168 68.128 68.178 3.2556 -0.067316 -0.00060407 NaN 24.674 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 45656 1094 4928 681 682 0.09759234828288754 ALVTAVVGAL 10 Unmodified _ALVTAVVGAL_ 0 0 0 REV__ENSG00000236782|ENST00000433939|ZNF593OS REV__ENSG00000236782|ENST00000433939|ZNF593OS MULTI-MSMS UPN46_class_I_Rep_3 1 457.289794921875 2 457.289485 912.564418 0.20516 9.382E-05 0.75054 0.00034321 0.9557 0.00043703 457.28931988999494 94.564 0.12286 94.564 94.535 94.657 0 25 13 3 0 0 0 0.40227 1 22945 22945 19.257 2.1441 1 117930 + 1095 21315 682 683 1407 1407 0.10463832454001931 ALVTGILPK 9 Unmodified _ALVTGILPK_ 0 0 0 REV__ENSG00000179776|ENST00000341529|CDH5 REV__ENSG00000179776|ENST00000341529|CDH5 MSMS UPN48_class_I_Rep_2 6 456.3011169433594 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 46.965 1 50.714 50.214 51.214 3.7494 0 0 0 0.38784 1 9238 9238 3.5965 1.7523 1 + 1096 20687 683 684 1408 1408 0.1262842283366581 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB ENST00000515528.1_1_5:73981085-73985366:+|nuORF ENST00000515528.1_1_5:73981085-73985366:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 450.765380859375 2 450.263468 898.512382 0.10251 4.6159E-05 -0.55508 -0.00024993 -0.45256 -0.00020377 450.2632385452798 58.126 0.43453 58.126 57.852 58.287 0 72 48 2 0 0 0 0.13244 1 12740 12740 27.629 0.74515 1 180290 1097 906 684 685 1409 1409 0.05906669040234647 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB ENST00000515528.1_1_5:73981085-73985366:+|nuORF ENST00000515528.1_1_5:73981085-73985366:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.76483154296875 2 450.263468 898.512382 -0.005101 -2.2968E-06 -0.58772 -0.00026463 -0.59282 -0.00026693 450.26310222763004 53.597 0.6921 57.124 56.772 57.464 3.5278 101 45 3 0 0 0 0.24936 2 12121 11937;12121 17.113 2.2746 1 217210 1098 906 684 685 1410;1411 1411 0.05906669040234647 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB ENST00000515528.1_1_5:73981085-73985366:+|nuORF ENST00000515528.1_1_5:73981085-73985366:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 450.2628173828125 2 450.263468 898.512382 -0.084859 -3.8209E-05 -0.50301 -0.00022649 -0.58787 -0.00026469 450.2631196199866 53.825 0.79635 57.148 56.803 57.6 3.3227 109 51 3 0 0 0 0.10568 2 12043 12043;12211 32.786 0.74515 1 271490 1099 906 684 685 1412;1413 1412 0.05906669040234647 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB ENST00000515528.1_1_5:73981085-73985366:+|nuORF ENST00000515528.1_1_5:73981085-73985366:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.2628173828125 2 450.263468 898.512382 -0.21408 -9.6392E-05 -0.4068 -0.00018317 -0.62088 -0.00027956 450.26319025009735 53.913 0.82052 57.099 56.79 57.611 3.1856 109 54 3 0 0 0 0.10568 3 12268 12140;12268;12310 32.786 2.1667 1 247280 1100 906 684 685 1414;1415;1416 1415 0.05906669040234647 ALWMFFYR 8 Unmodified _ALWMFFYR_ 0 0 0 ENST00000561938.1_1_16:79030112-79030229:+|nuORF ENST00000561938.1_1_16:79030112-79030229:+|nuORF ENST00000561938.1_1_16:79030112-79030229:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.2837524414062 2 567.28368 1132.55281 NaN NaN NaN NaN NaN NaN NaN 39.838 1 43.505 43.005 44.005 3.6668 0 0 0 0.40738 1 7834 7834 0.79363 0 1 1101 7464 685 686 1417 1417 -0.008166878410065692 ALWRRWWS 8 Unmodified _ALWRRWWS_ 0 0 0 REV__ENST00000484265.1_1_9:15506557-15510916:-|nuORF REV__ENST00000484265.1_1_9:15506557-15510916:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 580.7720947265625 2 580.809242 1159.60393 0.40684 0.0002363 0.4762 0.00027658 0.88305 0.00051288 580.8098892235383 59.952 0.090641 63.35 63.268 63.358 3.3982 6 4 2 0 0 0 0.72333 1 13954 13954 0.69038 0 1 35014 + 1102 22451 686 687 1418 1418 0.03051397248077592 ALWRTGHIR 9 Unmodified _ALWRTGHIR_ 0 0 0 ENST00000315762.5_9:67793260-67793749:+|nuORF ENST00000315762.5_9:67793260-67793749:+|nuORF ENST00000315762.5_9:67793260-67793749:+|nuORF MSMS UPN48_class_I_Rep_1 5 555.3193969726562 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 97.242 1 100.85 100.35 101.35 3.6088 0 0 0 0.39598 1 23455 23455 1.6526 0 1 1103 6133 687 688 1419 1419 0.07542782276777871 ALWRTGHIR 9 Unmodified _ALWRTGHIR_ 0 0 0 ENST00000315762.5_9:67793260-67793749:+|nuORF ENST00000315762.5_9:67793260-67793749:+|nuORF ENST00000315762.5_9:67793260-67793749:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 555.3206176757812 2 555.319974 1108.6254 0.39913 0.00022164 -1.3215 -0.00073385 -0.92236 -0.00051221 555.3191227106477 95.485 0.073463 99.393 99.348 99.422 3.9084 10 9 2 0 0 0 0.49026 1 22634 22634 1.6526 0 1 55287 1104 6133 687 688 1420 1420 0.07542782276777871 ALWRTGHIR 9 Unmodified _ALWRTGHIR_ 0 0 0 ENST00000315762.5_9:67793260-67793749:+|nuORF ENST00000315762.5_9:67793260-67793749:+|nuORF ENST00000315762.5_9:67793260-67793749:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 555.319974 1108.6254 0.49559 0.00027521 -1.5041 -0.00083525 -1.0085 -0.00056004 555.3191786360828 95.243 0.035225 99.023 98.995 99.03 3.7804 -0.18501 -9.7523E-05 NaN 1.6526 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 51702 1105 6133 687 688 0.07542782276777871 ALWTLLIPRE 10 Unmodified _ALWTLLIPRE_ 0 0 0 L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|28|2|sense L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|28|2|sense L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|28|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.8634643554688 2 606.360973 1210.70739 0.60693 0.00036802 0.62368 0.00037818 1.2306 0.0007462 606.3606891550822 109.69 0.56599 109.69 109.56 110.13 0 113 46 3 0 0 0 0.56033 1 26995 26995 3.5965 0.31518 1 4091400 1106 15358 688 689 1421 1421 0.11046839845243994 ALWVIFAR 8 Unmodified _ALWVIFAR_ 0 0 0 REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF MSMS UPN48_class_I_Rep_2 6 488.27911376953125 2 488.292362 974.570172 NaN NaN NaN NaN NaN NaN NaN 57.521 1 61.035 60.535 61.535 3.5142 0 0 0 0.4032 1 12448 12448 6.3541 0.59368 1 + 1107 18334 689 690 1422 1422 0.08186975756314041 ALYGQPLLL 9 Unmodified _ALYGQPLLL_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4 ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.2977600097656 2 494.29731 986.580068 0.2367 0.000117 0.18193 8.9929E-05 0.41863 0.00020693 494.29719426340927 78.418 0.53916 81.7 81.46 82 3.2816 115 57 3 0 0 0 0.13631 3 19577 19539;19577;19610 26.884 9.7708 1 169520 1108 2073 690 691 1423;1424;1425 1424 0.08624118971033568 ALYIQPRPVG 10 Unmodified _ALYIQPRPVG_ 0 0 0 REV__ENST00000513191.1_1_6:88146506-88173965:+|nuORF REV__ENST00000513191.1_1_6:88146506-88173965:+|nuORF MSMS UPN47_class_I_Rep_3 4 557.3245239257812 2 557.324391 1112.63423 NaN NaN NaN NaN NaN NaN NaN 57.444 1 60.612 60.112 61.112 3.1681 0 0 0 0.53105 1 13275 13275 3.5965 1.2938 1 + 1109 21422 691 692 1426 1426 0.08241711122605011 ALYKMYATDY 10 Unmodified _ALYKMYATDY_ 0 0 0 REV__L1MB4_dup7970|chr18:13469014-13469844:+|2.3023606522378426|0.0342873287734381|6.07|151.0|8|1|sense REV__L1MB4_dup7970|chr18:13469014-13469844:+|2.3023606522378426|0.0342873287734381|6.07|151.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 619.2886962890625 2 619.791732 1237.56891 0.44078 0.00027319 -1.856 -0.0011503 -1.4152 -0.00087713 619.7905759042152 62.359 0.29721 65.618 65.559 65.856 3.2594 26 19 2 0 0 0 0.84575 1 14759 14759 3.2813 1.2216 1 130010 + 1110 26025 692 693 1427 1427 -0.0403707118539387 ALYRLGRL 8 Unmodified _ALYRLGRL_ 0 0 0 nc|ENSG00000215912|A8MYJ7|TTC34;ENSG00000215912|ENST00000401095|TTC34 nc|ENSG00000215912|A8MYJ7|TTC34 nc|ENSG00000215912|A8MYJ7|TTC34 MSMS UPN47_class_I_Rep_1 2 481.30279541015625 2 481.300719 960.586885 NaN NaN NaN NaN NaN NaN NaN 88.362 1 92.018 91.518 92.518 3.6563 0 0 0 0.40738 1 22098 22098 0.79363 0 1 1111 5638 693 694 1428 1428 0.10501476642286889 ALYVFVMF 8 Unmodified _ALYVFVMF_ 0 0 0 L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|62|1|anti-sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|62|1|anti-sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_2 6 495.2648010253906 2 495.261882 988.509211 NaN NaN NaN NaN NaN NaN NaN 100.53 1 104.27 103.77 104.77 3.7417 0 0 0 0.40581 1 23871 23871 2.8892 0.31174 1 1112 13107 694 695 1429 1429 0.014497026618755626 AMALAYRSV 9 Unmodified _AMALAYRSV_ 0 0 0 REV__LTR10A_dup223|chr12:132095737-132096306:+|1.2297619971334832|0.07258999357036|4.08|151.0|7|1|sense REV__LTR10A_dup223|chr12:132095737-132096306:+|1.2297619971334832|0.07258999357036|4.08|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 490.7812805175781 2 491.262945 980.511337 NaN NaN NaN NaN NaN NaN NaN 70.891 1 70.891 70.391 71.391 0 0 0 0 0.39598 1 16311 16311 1.6526 0 1 + 1113 30782 695 696 1430 1430 0.020301313996810677 AMDKHLFRA 9 Unmodified _AMDKHLFRA_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-5|OBSCN REV__nc|ENSG00000154358|Q5VST9-5|OBSCN MSMS UPN47_class_I_Rep_2 3 544.7854614257812 2 544.787118 1087.55968 NaN NaN NaN NaN NaN NaN NaN 77.899 1 81.242 80.742 81.742 3.3428 0 0 0 0.39518 1 19342 19342 1.8442 0.19162 1 + 1114 19737 696 697 1431 1431 0.019406250395832103 AMFGKLMTI 9 2 Oxidation (M) _AM(Oxidation (M))FGKLM(Oxidation (M))TI_ AM(1)FGKLM(1)TI AM(44)FGKLM(44)TI 0 0 2 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN46_class_I_Rep_3 1 522.7674560546875 2 522.266838 1042.51912 0.2609 0.00013626 -0.34233 -0.00017879 -0.081427 -4.2527E-05 522.2665708961325 52.772 0.17778 52.772 52.646 52.824 0 25 19 2 0 0 0 0.061943 1 11301 11301 43.858 14.777 1 201860 1115 2368 697 698 1432 1432 82;83 -0.00043477395047375467 AMFGKLMTI 9 2 Oxidation (M) _AM(Oxidation (M))FGKLM(Oxidation (M))TI_ AM(1)FGKLM(1)TI AM(59)FGKLM(59)TI 0 0 2 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MSMS UPN46_class_I_Rep_3 1 522.2669677734375 2 522.266838 1042.51912 NaN NaN NaN NaN NaN NaN NaN 52.891 1 52.891 52.391 53.391 0 0 0 0 0.0036588 1 11338 11338 58.679 31.05 1 1116 2368 697 698 1433 1433 82;83 -0.00043477395047375467 AMKWEKVKL 9 Unmodified _AMKWEKVKL_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|66|2|sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 566.7771606445312 2 566.830995 1131.64744 NaN NaN NaN NaN NaN NaN NaN 111.79 1 115.42 114.92 115.92 3.6326 0 0 0 0.40038 1 27122 27122 0.6015 0 1 + 1117 25613 698 699 1434 1434 0.08687825910351421 AMLFLFRR 8 Unmodified _AMLFLFRR_ 0 0 0 REV__ENST00000413432.2_1_2:242381259-242381301:+|nuORF REV__ENST00000413432.2_1_2:242381259-242381301:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 527.3053588867188 2 527.304947 1052.59534 0.4752 0.00025058 0.48046 0.00025335 0.95567 0.00050393 527.3051186266487 89.867 0.721 93.709 93.376 94.097 3.8421 163 96 2 0 0 0 0.82752 1 21288 21288 2.5775 0 1 334320 + 1118 22202 699 700 1435 1435 0.07114707287246347 AMLRANCVML 10 Unmodified _AMLRANCVML_ 0 0 0 REV__nc|ENSG00000182010|Q8IZC4-3|RTKN2 REV__nc|ENSG00000182010|Q8IZC4-3|RTKN2 MSMS UPN48_class_I_Rep_2 6 561.287109375 2 561.28504 1120.55553 NaN NaN NaN NaN NaN NaN NaN 63.526 1 67 66.5 67.5 3.4741 0 0 0 0.53105 1 14290 14290 3.5965 1.5367 1 + 1119 20744 700 701 1436 1436 7.076230008351558E-05 AMLRGGNYVL 10 Unmodified _AMLRGGNYVL_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 547.2950439453125 2 547.294776 1092.575 0.02031 1.1115E-05 0.056174 3.0744E-05 0.076483 4.1859E-05 547.2947348172123 25.122 0.27338 25.122 24.96 25.233 0 37 25 2 0 0 0 0.56333 1 3382 3382 1.4819 0.79152 1 51131 1120 8015 701 702 1437 1437 0.032414918367749124 AMLVRGWK 8 Unmodified _AMLVRGWK_ 0 0 0 REV__L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|15|3|sense REV__L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 480.7770080566406 2 480.776022 959.537492 NaN NaN NaN NaN NaN NaN NaN 14.601 1 17.971 17.471 18.471 3.3697 0 0 0 0.40738 1 585 585 0.79363 0 1 + 1121 24741 702 703 1438 1438 0.05610445361833172 AMMLTLHYR 9 Unmodified _AMMLTLHYR_ 0 0 0 REV__L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense REV__L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 568.2926025390625 2 568.291179 1134.56781 0.045063 2.5609E-05 -0.47194 -0.0002682 -0.42688 -0.00024259 568.290749986788 40.638 0.57992 44.009 43.687 44.267 3.3712 54 41 2 0 0 0 0.49026 1 8020 8020 1.6526 0.17072 1 100330 + 1122 25899 703 704 1439 1439 0.005904359647047386 AMMLTLHYR 9 Unmodified _AMMLTLHYR_ 0 0 0 REV__L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense REV__L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 568.291179 1134.56781 -0.036569 -2.0782E-05 -0.68276 -0.00038801 -0.71933 -0.00040879 568.290715222091 40.376 0.58239 44.043 43.661 44.244 3.6668 0.041032 -9.1441E-05 NaN 1.6526 67 43 2 NaN NaN NaN NaN 0 NaN NaN 0 86817 + 1123 25899 703 704 0.005904359647047386 AMMLTLHYR 9 Unmodified _AMMLTLHYR_ 0 0 0 REV__L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense REV__L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 568.291179 1134.56781 0.045063 2.5609E-05 -0.47194 -0.0002682 -0.42688 -0.00024259 568.290749986788 40.638 0.57992 44.009 43.687 44.267 3.3712 0.0070169 0.00014817 NaN 1.6526 54 41 2 NaN NaN NaN NaN 0 NaN NaN 0 100330 + 1124 25899 703 704 0.005904359647047386 AMRVPMLYY 9 Unmodified _AMRVPMLYY_ 0 0 0 REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|28|2|sense REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.7886352539062 2 572.288105 1142.56166 0.39456 0.0002258 -0.72063 -0.00041241 -0.32607 -0.00018661 572.2876131997231 59.857 0.86761 63.255 62.829 63.697 3.3982 106 57 3 0 0 0 0.41259 1 13810 13810 7.2892 2.96 1 261040 + 1125 28968 704 705 1440 1440 -0.003920822668305846 AMRVPMLYY 9 Unmodified _AMRVPMLYY_ 0 0 0 REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|28|2|sense REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.7889404296875 2 572.288105 1142.56166 0.36659 0.00020979 -0.51948 -0.00029729 -0.15289 -8.7498E-05 572.2876768640289 60.111 0.85489 63.276 62.9 63.754 3.1651 90 54 2 0 0 0 0.33654 1 13992 13992 11.64 2.2572 1 230200 + 1126 28968 704 705 1441 1441 -0.003920822668305846 AMTALYGCY 9 Unmodified _AMTALYGCY_ 0 0 0 REV__ENST00000547581.5_1_12:48529049-48539488:+|nuORF REV__ENST00000547581.5_1_12:48529049-48539488:+|nuORF MSMS UPN47_class_I_Rep_1 2 496.712158203125 2 496.714439 991.414325 NaN NaN NaN NaN NaN NaN NaN 29.433 1 33.19 32.69 33.69 3.7578 0 0 0 0.39518 1 4674 4674 1.8442 0.19162 1 + 1127 19686 705 706 1442 1442 -0.08172598871624359 AMYYPHVGY 9 Unmodified _AMYYPHVGY_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS UPN47_class_I_Rep_1 2 550.7306518554688 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 48.021 1 51.703 51.203 52.203 3.6819 0 0 0 0.39326 1 10322 10322 2.3027 0.24298 1 + 1128 21388 706 707 1443 1443 -0.06605861354250919 AMYYPHVGY 9 Unmodified _AMYYPHVGY_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS UPN47_class_I_Rep_1 2 550.72998046875 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 48.211 1 51.893 51.393 52.393 3.6819 0 0 0 0.381 1 10380 10380 5.2307 2.6532 1 + 1129 21388 706 707 1444 1444 -0.06605861354250919 AMYYPHVGY 9 Unmodified _AMYYPHVGY_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS UPN47_class_I_Rep_3 4 550.7313842773438 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 48.875 1 52.11 51.61 52.61 3.2345 0 0 0 0.39326 1 10665 10665 2.3027 0.24298 1 + 1130 21388 706 707 1445 1445 -0.06605861354250919 ANHPHRIEI 9 Unmodified _ANHPHRIEI_ 0 0 0 ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5 ENSG00000166170|ENST00000299204|BAG5 ENSG00000166170|ENST00000299204|BAG5 MULTI-MSMS UPN48_class_I_Rep_2 6 543.7932739257812 2 543.793789 1085.57303 0.45108 0.0002453 -1.1466 -0.00062353 -0.69554 -0.00037823 543.7930969385004 50.271 0.43366 53.965 53.735 54.169 3.6946 51 28 2 0 0 0 0.28552 1 10224 10224 14.838 1.7958 1 166630 1131 4222 707 708 1446 1446 0.03366199143169979 ANHYEDYGDY 10 Unmodified _ANHYEDYGDY_ 0 0 0 ENSG00000130234|ENST00000252519|ACE2 ENSG00000130234|ENST00000252519|ACE2 ENSG00000130234|ENST00000252519|ACE2 MSMS UPN48_class_I_Rep_1 5 623.7352294921875 2 623.736 1245.45745 NaN NaN NaN NaN NaN NaN NaN 24.945 1 28.512 28.012 29.012 3.5667 0 0 0 0.53105 1 2830 2830 1.6526 0 1 1132 2648 708 709 1447 1447 -0.1554641428897412 ANKGLISYKQK 11 Unmodified _ANKGLISYKQK_ 0 0 0 REV__Tigger2_dup2719|chr21:36354601-36355667:-|1.8830550622561544|0.1496015630393097|3.65|151.0|12|2|sense REV__Tigger2_dup2719|chr21:36354601-36355667:-|1.8830550622561544|0.1496015630393097|3.65|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 625.3694458007812 2 625.366787 1248.71902 NaN NaN NaN NaN NaN NaN NaN 91.898 1 95.301 94.801 95.801 3.4034 0 0 0 0.38417 1 22960 22960 4.897 0 1 + 1133 32663 709 710 1448 1448 0.10461036868559859 ANKLLQPRID 10 Unmodified _ANKLLQPRID_ 0 0 0 REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 MSMS UPN48_class_I_Rep_2 6 584.0108032226562 2 584.345855 1166.67716 NaN NaN NaN NaN NaN NaN NaN 101.66 1 105.38 104.88 105.88 3.7252 0 0 0 0.53105 1 24106 24106 1.4819 0 1 + 1134 18876 710 711 1449 1449 0.10048481180024282 ANKQRLHHV 9 Unmodified _ANKQRLHHV_ 0 0 0 ENST00000463743.5_1_10:95066520-95066565:-|nuORF ENST00000463743.5_1_10:95066520-95066565:-|nuORF ENST00000463743.5_1_10:95066520-95066565:-|nuORF MSMS UPN48_class_I_Rep_2 6 551.7842407226562 2 551.815056 1101.61556 NaN NaN NaN NaN NaN NaN NaN 63.055 1 66.528 66.028 67.028 3.4738 0 0 0 0.39326 1 14145 14145 2.3027 0.24298 1 1135 6878 711 712 1450 1450 0.06881594271385438 ANKRGDPLS 9 Unmodified _ANKRGDPLS_ 0 0 0 REV__ENST00000530958.5_1_11:108094386-108094650:+|nuORF REV__ENST00000530958.5_1_11:108094386-108094650:+|nuORF MSMS UPN47_class_I_Rep_1 2 479.2588806152344 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 32.569 1 36.282 35.782 36.782 3.7131 0 0 0 0.3967 1 5622 5622 1.4819 0.28856 1 + 1136 22850 712 713 1451 1451 0.023951151236246915 ANNPPIVVF 9 Unmodified _ANNPPIVVF_ 0 0 0 REV__nc|ENSG00000166961|Q8N5U1-3|MS4A15 REV__nc|ENSG00000166961|Q8N5U1-3|MS4A15 MSMS UPN48_class_I_Rep_1 5 485.772216796875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 23.082 1 26.643 26.143 27.143 3.5605 0 0 0 0.39326 1 2351 2351 2.3027 0 1 + 1137 20201 713 714 1452 1452 0.0423837527713431 ANPNLTSKR 9 Unmodified _ANPNLTSKR_ 0 0 0 REV__nc|ENSG00000204842|Q99700-2|ATXN2 REV__nc|ENSG00000204842|Q99700-2|ATXN2 MSMS UPN48_class_I_Rep_1 5 500.7808837890625 2 500.780348 999.546142 NaN NaN NaN NaN NaN NaN NaN 30.724 1 34.266 33.766 34.766 3.542 0 0 0 0.38639 1 4450 4450 3.9444 0 1 + 1138 21207 714 715 1453 1453 0.046350905319854974 ANQGQGLSIY 10 Unmodified _ANQGQGLSIY_ 0 0 0 REV__THE1D-int_dup1265|chr8:106673009-106674616:+|1.089489952425346|0.0480364188887754|4.5|151.0|84|2|anti-sense REV__THE1D-int_dup1265|chr8:106673009-106674616:+|1.089489952425346|0.0480364188887754|4.5|151.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.7642822265625 2 525.764363 1049.51417 -0.24964 -0.00013125 -0.90495 -0.00047579 -1.1546 -0.00060704 525.7636716977364 31.864 0.38475 35.164 35.026 35.411 3.2991 44 28 2 0 0 0 0.55983 1 5456 5456 3.9444 0.94915 1 71513 + 1139 32303 715 716 1454 1454 -0.008603219417864238 ANQQALRR 8 Unmodified _ANQQALRR_ 0 0 0 MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|3|1|sense MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|3|1|sense MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 478.77203369140625 2 478.772857 955.531161 NaN NaN NaN NaN NaN NaN NaN 81.185 1 81.185 80.685 81.685 0 0 0 0 0.40625 1 19161 19161 2.3027 0.24298 1 1140 15759 716 717 1455 1455 0.05161643454653131 ANTPTTFNTIK 11 Unmodified _ANTPTTFNTIK_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS UPN48_class_I_Rep_3 7 604.317626953125 2 604.319502 1206.62445 NaN NaN NaN NaN NaN NaN NaN 33.68 1 37.36 36.86 37.86 3.6797 0 0 0 0.38417 1 5267 5267 1.0715 0.46996 1 + 1141 21388 717 718 1456 1456 0.029404783265590595 ANTWVWPICL 10 Unmodified _ANTWVWPICL_ 0 0 0 REV__L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|37|1|anti-sense REV__L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 601.803466796875 2 601.804977 1201.5954 NaN NaN NaN NaN NaN NaN NaN 36.991 1 36.991 36.491 37.491 0 0 0 0 0.53105 1 6912 6912 3.9444 1.2092 1 + 1142 26691 718 719 1457 1457 0.002666624965968367 ANVGAGKKPKE 11 Unmodified _ANVGAGKKPKE_ 0 0 0 nc|ENSG00000138326|P62847|RPS24 nc|ENSG00000138326|P62847|RPS24 nc|ENSG00000138326|P62847|RPS24 MULTI-SECPEP UPN47_class_I_Rep_2 3 549.81689453125 2 549.81693 1097.61931 0.032756 1.801E-05 -0.44234 -0.0002432 -0.40958 -0.00022519 549.8166847294818 12.645 0.21747 16.034 15.938 16.155 3.3885 53 26 3 0 0 0 22.551 1 114 114 3.8763 2.2237 1 59417 1143 16693 719 720 1458 1458 0.07440219254613112 APAITSSLK 9 Unmodified _APAITSSLK_ 0 0 0 REV__L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|3|1|sense REV__L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 444.26373291015625 2 444.263468 886.512382 0.17043 7.5715E-05 1.182 0.00052511 1.3524 0.00060083 444.2639198563836 107.94 0.43519 107.94 107.87 108.31 0 67 36 4 0 0 0 0.46434 1 26323 26323 4.3292 0 1 123190000 + 1144 28356 720 721 1459 1459 0.06458669040250697 APALLLKKLL 10 Unmodified _APALLLKKLL_ 0 0 0 REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A MSMS UPN46_class_I_Rep_3 1 540.3827514648438 2 540.381177 1078.7478 NaN NaN NaN NaN NaN NaN NaN 44.325 1 44.325 43.825 44.825 0 0 0 0 0.53105 1 8923 8923 0.45834 0.45834 1 + 1145 17450 721 722 1460 1460 0.21157806235646603 APALRVPPLA 10 Unmodified _APALRVPPLA_ 0 0 0 REV__MER1A_dup3079|chr20:8518614-8519148:-|1.0979109594689225|0.0093041001049378|6.88|151.0|8|2|sense REV__MER1A_dup3079|chr20:8518614-8519148:-|1.0979109594689225|0.0093041001049378|6.88|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 502.81439208984375 2 502.816202 1003.61785 NaN NaN NaN NaN NaN NaN NaN 92.214 1 92.214 91.714 92.714 0 0 0 0 0.53105 1 22307 22307 20.454 4.6064 1 + 1146 31128 722 723 1461 1461 0.11618629956501536 APAPGTAGRGP 11 Unmodified _APAPGTAGRGP_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS UPN48_class_I_Rep_3 7 476.2550964355469 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 93.05 1 96.928 96.428 97.428 3.8782 0 0 0 0.38417 1 22049 22049 2.4985 0 1 1147 4110 723 724 1462 1462 0.01615132469191849 APAPKRVRK 9 Unmodified _APAPKRVRK_ 0 0 0 ENST00000586178.5_1_17:49296359-49302518:-|nuORF ENST00000586178.5_1_17:49296359-49302518:-|nuORF ENST00000586178.5_1_17:49296359-49302518:-|nuORF MSMS UPN48_class_I_Rep_1 5 512.28271484375 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 32.982 1 36.508 36.008 37.008 3.5266 0 0 0 0.40038 1 5086 5086 0.6015 0.14316 1 1148 7584 724 725 1463 1463 0.14092256799233382 APCHNNEMPS 10 Unmodified _APCHNNEMPS_ 0 0 0 REV__ENSG00000139083|ENST00000396373|ETV6 REV__ENSG00000139083|ENST00000396373|ETV6 MSMS UPN48_class_I_Rep_2 6 550.2175903320312 2 550.218408 1098.42226 NaN NaN NaN NaN NaN NaN NaN 28.405 1 32.036 31.536 32.536 3.6311 0 0 0 0.53105 1 3905 3905 3.2813 0.70383 1 + 1149 19301 725 726 1464 1464 -0.12301071622141535 APEAFPAPMMF 11 Unmodified _APEAFPAPMMF_ 0 0 0 ENST00000398341.7_1_21:44000866-44001409:+|nuORF ENST00000398341.7_1_21:44000866-44001409:+|nuORF ENST00000398341.7_1_21:44000866-44001409:+|nuORF MSMS UPN47_class_I_Rep_1 2 604.7740478515625 2 604.77757 1207.54059 NaN NaN NaN NaN NaN NaN NaN 20.036 1 23.648 23.148 24.148 3.6118 0 0 0 0.38417 1 1942 1942 1.3295 0.72803 1 1150 6584 726 727 1465 1465 -0.05488092366363162 APEEKQPEG 9 Unmodified _APEEKQPEG_ 0 0 0 REV__ENST00000375567.3_X:52543861-52545988:-|nuORF REV__ENST00000375567.3_X:52543861-52545988:-|nuORF MSMS UPN48_class_I_Rep_3 7 492.7356262207031 2 492.735271 983.45599 NaN NaN NaN NaN NaN NaN NaN 66.15 1 69.658 69.158 70.158 3.5077 0 0 0 0.39428 1 15004 15004 2.0598 0 1 + 1151 22010 727 728 1466 1466 -0.036400035870883585 APEKRSLEAY 10 Unmodified _APEKRSLEAY_ 0 0 0 nc|ENSG00000151615|Q12837-2|POU4F2;nc|ENSG00000152192|Q01851-2|POU4F1;ENSG00000091010|ENST00000646991|POU4F3;ENSG00000151615|ENST00000281321|POU4F2;ENSG00000152192|ENST00000377208|POU4F1 nc|ENSG00000151615|Q12837-2|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 MSMS UPN47_class_I_Rep_2 3 582.3072509765625 2 582.306395 1162.59824 NaN NaN NaN NaN NaN NaN NaN 43.67 1 47.028 46.528 47.528 3.358 0 0 0 0.53105 1 9031 9031 3.9444 0.66309 1 1152 1363 728 729 1467 1467 0.023442091550805344 APELVEVEV 9 Unmodified _APELVEVEV_ 0 0 0 ENSG00000076706|ENST00000264036|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF;ENST00000525586.5_1_11:119185190-119185971:-|nuORF ENSG00000076706|ENST00000264036|MCAM ENSG00000076706|ENST00000264036|MCAM MSMS UPN47_class_I_Rep_3 4 492.76568603515625 2 492.76604 983.517527 NaN NaN NaN NaN NaN NaN NaN 70.93 1 74.142 73.642 74.642 3.2113 0 0 0 0.37476 1 17380 17380 6.7232 1.4925 1 1153 1161 729 730 1468 1468 0.02510928112201327 APERVGPCFL 10 Unmodified _APERVGPCFL_ 0 0 0 nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2 nc|ENSG00000101977|P10911-6|MCF2 nc|ENSG00000101977|P10911-6|MCF2 MSMS UPN47_class_I_Rep_1 2 544.7816772460938 2 544.781502 1087.54845 NaN NaN NaN NaN NaN NaN NaN 31.912 1 35.642 35.142 36.142 3.7293 0 0 0 0.53105 1 5421 5421 3.5965 0 1 1154 1597 730 731 1469 1469 0.008178029454484204 APFFSCSSSCL 11 Unmodified _APFFSCSSSCL_ 0 0 0 ENST00000373517.3_1_X:72434414-72434678:-|nuORF ENST00000373517.3_1_X:72434414-72434678:-|nuORF ENST00000373517.3_1_X:72434414-72434678:-|nuORF MSMS UPN48_class_I_Rep_1 5 574.7398071289062 2 574.741185 1147.46782 NaN NaN NaN NaN NaN NaN NaN 19.212 1 22.749 22.249 23.249 3.5378 0 0 0 0.38417 1 1417 1417 1.3295 0.63916 1 1155 6417 731 732 1470 1470 -0.10001846159752859 APFFSPPSSI 10 Unmodified _APFFSPPSSI_ 0 0 0 L1PA16_dup9649|chr10:87473204-87473933:+|2.39283964292188|0.1001031780022268|4.58|151.0|37|2|anti-sense L1PA16_dup9649|chr10:87473204-87473933:+|2.39283964292188|0.1001031780022268|4.58|151.0|37|2|anti-sense L1PA16_dup9649|chr10:87473204-87473933:+|2.39283964292188|0.1001031780022268|4.58|151.0|37|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2682495117188 2 525.26875 1048.52295 NaN NaN NaN NaN NaN NaN NaN 88.407 1 92.063 91.563 92.563 3.6563 0 0 0 0.53105 1 22109 22109 3.5965 0.31518 1 1156 14141 732 733 1471 1471 0.0006265169467951637 APFLCPLCHHH 11 Unmodified _APFLCPLCHHH_ 0 0 0 nc|nan|Q9NQ32-2|C11orf16;ENSG00000176029|ENST00000326053|C11orf16 nc|nan|Q9NQ32-2|C11orf16 nc|nan|Q9NQ32-2|C11orf16 MSMS UPN48_class_I_Rep_2 6 637.7999877929688 2 637.799703 1273.58485 NaN NaN NaN NaN NaN NaN NaN 40.434 1 44.175 43.675 44.675 3.7413 0 0 0 0.38417 1 7277 7277 1.4819 0 1 1157 4745 733 734 1472 1472 -0.04099643429481148 APFLGSINL 9 Unmodified _APFLGSINL_ 0 0 0 MER21A_dup886|chr7:66761085-66761604:-|1.1201511897538474|0.0444418019224469|4.66|151.0|33|3|anti-sense MER21A_dup886|chr7:66761085-66761604:-|1.1201511897538474|0.0444418019224469|4.66|151.0|33|3|anti-sense MER21A_dup886|chr7:66761085-66761604:-|1.1201511897538474|0.0444418019224469|4.66|151.0|33|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 466.2657165527344 2 466.26601 930.517468 0.14532 6.7756E-05 -0.75667 -0.00035281 -0.61136 -0.00028506 466.26560135617086 56.399 0.52756 59.9 59.593 60.12 3.5014 50 41 2 0 0 0 0.48414 1 12162 12162 2.3027 0 1 160420 1158 15860 734 735 1473 1473 0.04942972902836118 APFLGSINL 9 Unmodified _APFLGSINL_ 0 0 0 MER21A_dup886|chr7:66761085-66761604:-|1.1201511897538474|0.0444418019224469|4.66|151.0|33|3|anti-sense MER21A_dup886|chr7:66761085-66761604:-|1.1201511897538474|0.0444418019224469|4.66|151.0|33|3|anti-sense MER21A_dup886|chr7:66761085-66761604:-|1.1201511897538474|0.0444418019224469|4.66|151.0|33|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 466.26601 930.517468 0.093974 4.3817E-05 -0.76274 -0.00035564 -0.66876 -0.00031182 466.26558387708883 56.32 0.5014 59.863 59.527 60.028 3.5427 0.10988 -7.2562E-05 NaN 2.3027 59 42 2 NaN NaN NaN NaN 0 NaN NaN 0 109720 1159 15860 734 735 0.04942972902836118 APFLKGLFA 9 Unmodified _APFLKGLFA_ 0 0 0 L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|72|1|anti-sense L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|72|1|anti-sense L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|72|1|anti-sense MSMS UPN47_class_I_Rep_1 2 482.28497314453125 2 482.286746 962.558939 NaN NaN NaN NaN NaN NaN NaN 49.583 1 53.242 52.742 53.742 3.6592 0 0 0 0.38299 1 10798 10798 4.756 0.42677 1 1160 11204 735 736 1474 1474 0.07616153662183933 APFLKHKW 8 Unmodified _APFLKHKW_ 0 0 0 REV__L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|38|3|anti-sense REV__L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|38|3|anti-sense MSMS UPN48_class_I_Rep_3 7 513.7984008789062 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 71.528 1 75.055 74.555 75.555 3.5266 0 0 0 0.40738 1 16617 16617 0.79363 0 1 + 1161 28428 736 737 1475 1475 0.06930378130596182 APFRDGFRPCL 11 Unmodified _APFRDGFRPCL_ 0 0 0 REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF MSMS UPN46_class_I_Rep_3 1 639.823974609375 2 639.824232 1277.63391 NaN NaN NaN NaN NaN NaN NaN 73.734 1 73.734 73.234 74.234 0 0 0 0 0.38417 1 17103 17103 1.3295 0 1 + 1162 22996 737 738 1476 1476 0.006199681311045424 APFWDYSH 8 Unmodified _APFWDYSH_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MSMS UPN46_class_I_Rep_3 1 511.7226867675781 2 511.721967 1021.42938 NaN NaN NaN NaN NaN NaN NaN 117.14 1 117.14 116.64 117.64 0 0 0 0 0.40738 1 29024 29024 0.79363 0 1 + 1163 18279 738 739 1477 1477 -0.08047647687772042 APFWPIEFLL 10 Unmodified _APFWPIEFLL_ 0 0 0 L1MB2_dup1466|chr3:87870871-87871762:+|1.9058879175489685|0.0072572112011379|8.04|135.0|31|1|anti-sense L1MB2_dup1466|chr3:87870871-87871762:+|1.9058879175489685|0.0072572112011379|8.04|135.0|31|1|anti-sense L1MB2_dup1466|chr3:87870871-87871762:+|1.9058879175489685|0.0072572112011379|8.04|135.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 616.835693359375 2 616.839342 1231.66413 NaN NaN NaN NaN NaN NaN NaN 60.334 1 63.807 63.307 64.307 3.4737 0 0 0 0.53105 1 13336 13336 1.6526 0.17072 1 1164 10213 739 740 1478 1478 0.05756650067951341 APHFHLRPL 9 Unmodified _APHFHLRPL_ 0 0 0 MSTC-int_dup111|chr10:30992713-30994266:+|1.250346202415718|0.0561405242032902|4.48|151.0|92|3|anti-sense MSTC-int_dup111|chr10:30992713-30994266:+|1.250346202415718|0.0561405242032902|4.48|151.0|92|3|anti-sense MSTC-int_dup111|chr10:30992713-30994266:+|1.250346202415718|0.0561405242032902|4.48|151.0|92|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.3130493164062 2 544.311618 1086.60868 NaN NaN NaN NaN NaN NaN NaN 74.647 1 74.647 74.147 75.147 0 0 0 0 0.38478 1 17325 17325 4.3292 0.38484 1 1165 16594 740 741 1479 1479 0.06884281390830438 APHKLTML 8 Unmodified _APHKLTML_ 0 0 0 REV__HERV35I-int_dup447|chr16:8826053-8827380:-|1.2913911662365385|0.103289276646969|3.64|151.0|86|3|anti-sense REV__HERV35I-int_dup447|chr16:8826053-8827380:-|1.2913911662365385|0.103289276646969|3.64|151.0|86|3|anti-sense MSMS UPN48_class_I_Rep_3 7 455.7611389160156 2 455.762581 909.510608 NaN NaN NaN NaN NaN NaN NaN 43.877 1 47.516 47.016 48.016 3.6385 0 0 0 0.40738 1 8219 8219 0.79363 0 1 + 1166 23592 741 742 1480 1480 0.052233367506119066 APHLSHPD 8 Unmodified _APHLSHPD_ 0 0 0 REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF MSMS UPN47_class_I_Rep_1 2 437.5909118652344 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 92.575 1 96.295 95.795 96.795 3.7209 0 0 0 0.40738 1 23065 23065 0.79363 0 1 + 1167 20210 742 743 1481 1481 -0.027245144849530334 APHLSHPD 8 Unmodified _APHLSHPD_ 0 0 0 REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF MSMS UPN47_class_I_Rep_1 2 437.2150573730469 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 92.656 1 96.377 95.877 96.877 3.7209 0 0 0 0.40738 1 23079 23079 0.79363 0 1 + 1168 20210 742 743 1482 1482 -0.027245144849530334 APHWQKNC 8 Unmodified _APHWQKNC_ 0 0 0 ENST00000431648.8_2_18:14183976-14188031:+|nuORF;ENST00000581181.5_1_18:14179393-14187439:+|nuORF ENST00000431648.8_2_18:14183976-14188031:+|nuORF ENST00000431648.8_2_18:14183976-14188031:+|nuORF MSMS UPN48_class_I_Rep_1 5 492.2285461425781 2 492.229436 982.44432 NaN NaN NaN NaN NaN NaN NaN 25.375 1 28.942 28.442 29.442 3.5667 0 0 0 0.40738 1 2947 2947 0.79363 0.10326 1 1169 6731 743 744 1483 1483 -0.04760479091419256 APIAIMLWKIL 11 Unmodified _APIAIMLWKIL_ 0 0 0 REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000173208|ENST00000308666|ABCD2 MULTI-MSMS UPN47_class_I_Rep_2 3 634.8931884765625 2 634.893595 1267.77264 0.63445 0.00040281 -1.0281 -0.00065276 -0.39368 -0.00024995 634.8926110111565 98.36 0.48264 101.85 101.48 101.96 3.4897 106 65 2 0 0 0 0.57992 2 24098 24098;24124 5.7319 2.7366 1 296180 + 1170 20476 744 745 1484;1485 1484 0.1494611804669148 APIAIMLWKIL 11 Unmodified _APIAIMLWKIL_ 0 0 0 REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000173208|ENST00000308666|ABCD2 MULTI-MSMS UPN48_class_I_Rep_3 7 634.8934936523438 2 634.893595 1267.77264 0.62041 0.0003939 -0.94871 -0.00060233 -0.32829 -0.00020843 634.8926699937593 98.004 0.14368 101.91 101.81 101.96 3.9022 36 18 2 0 0 0 0.57992 1 23219 23219 5.7319 0.83484 1 502570 + 1171 20476 744 745 1486 1486 0.1494611804669148 APIAKHQARK 10 Unmodified _APIAKHQARK_ 0 0 0 REV__ENSG00000116668|ENST00000367500|SWT1 REV__ENSG00000116668|ENST00000367500|SWT1 MSMS UPN47_class_I_Rep_1 2 560.340576171875 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 95.23 1 98.995 98.495 99.495 3.7648 0 0 0 0.53105 1 23642 23642 1.6526 0.17072 1 + 1172 18610 745 746 1487 1487 0.11267337965296065 APIAKHQARK 10 Unmodified _APIAKHQARK_ 0 0 0 REV__ENSG00000116668|ENST00000367500|SWT1 REV__ENSG00000116668|ENST00000367500|SWT1 MULTI-MSMS UPN48_class_I_Rep_2 6 560.3402709960938 2 560.340907 1118.66726 0.49458 0.00027714 -1.5478 -0.0008673 -1.0532 -0.00059016 560.3402570022141 94.887 0.092896 98.663 98.588 98.681 3.7761 16 12 2 0 0 0 0.56309 1 22554 22554 1.6526 0 1 89465 + 1173 18610 745 746 1488 1488 0.11267337965296065 APIAKHQARK 10 Unmodified _APIAKHQARK_ 0 0 0 REV__ENSG00000116668|ENST00000367500|SWT1 REV__ENSG00000116668|ENST00000367500|SWT1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 560.340907 1118.66726 0.49458 0.00027714 -1.5478 -0.0008673 -1.0532 -0.00059016 560.3402570022141 94.887 0.092896 98.663 98.588 98.681 3.7761 -0.069252 -0.00030709 NaN 1.6526 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 89465 + 1174 18610 745 746 0.11267337965296065 APIAKVDVN 9 Unmodified _APIAKVDVN_ 0 0 0 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 MULTI-MSMS UPN48_class_I_Rep_2 6 463.76837158203125 2 463.768917 925.523281 0.1889 8.7605E-05 -1.2983 -0.00060213 -1.1094 -0.00051452 463.76815737180846 107.73 0.10447 111.41 111.37 111.47 3.6783 18 11 2 0 0 0 0.41259 1 25484 25484 7.2892 0.56607 1 8123500 + 1175 19940 746 747 1489 1489 0.05754071414514783 APIAKVDVN 9 Unmodified _APIAKVDVN_ 0 0 0 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 463.768917 925.523281 0.18312 8.4927E-05 -1.2556 -0.00058229 -1.0724 -0.00049737 463.7682616901189 107.75 0.081055 111.29 111.25 111.33 3.5345 -0.08938 -4.8031E-05 NaN 7.2892 18 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1856300 + 1176 19940 746 747 0.05754071414514783 APIAKVDVN 9 Unmodified _APIAKVDVN_ 0 0 0 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 463.768917 925.523281 -0.032135 -1.4903E-05 -1.4645 -0.00067919 -1.4966 -0.00069409 463.7681432652698 107.76 0.10876 111.3 111.25 111.36 3.5382 -0.075844 -0.00024182 NaN 7.2892 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4138800 + 1177 19940 746 747 0.05754071414514783 APIAKVDVN 9 Unmodified _APIAKVDVN_ 0 0 0 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 REV__nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 463.768917 925.523281 0.055492 2.5735E-05 -0.96717 -0.00044854 -0.91168 -0.00042281 463.7682543568523 107.76 0.1123 111.39 111.33 111.44 3.6313 0.0093041 0.00021947 NaN 7.2892 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 7141400 + 1178 19940 746 747 0.05754071414514783 APIALKRKL 9 Unmodified _APIALKRKL_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MULTI-SECPEP UPN47_class_I_Rep_2 3 504.8087158203125 2 505.347669 1008.68079 0.36764 0.00018579 -0.17553 -8.8703E-05 0.19211 9.7082E-05 505.3477434142702 108.94 0.12411 112.47 112.38 112.51 3.5333 18 14 2 0 0 0 0.12527 1 26471 26471 0.6015 0 1 3053100 1179 2245 747 748 1490 1490 0.17679195744540266 APIALKRKL 9 Unmodified _APIALKRKL_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MULTI-SECPEP UPN47_class_I_Rep_3 4 504.8089294433594 2 505.347669 1008.68079 0.3101 0.00015671 -0.86065 -0.00043493 -0.55055 -0.00027822 505.34709444438073 108.71 0.17464 112.24 112.19 112.37 3.5382 24 17 2 0 0 0 0.12527 1 26632 26632 0.6015 0 1 3908900 1180 2245 747 748 1491 1491 0.17679195744540266 APIIPTLWRAR 11 Unmodified _APIIPTLWRAR_ 0 0 0 REV__AluSx1_dup113509|chr21:34990674-34990889:-|2.3164661514105176|0.0058904499773558|8.62|151.0|6|3|sense REV__AluSx1_dup113509|chr21:34990674-34990889:-|2.3164661514105176|0.0058904499773558|8.62|151.0|6|3|sense MSMS UPN48_class_I_Rep_1 5 647.3935546875 2 647.393139 1292.77173 NaN NaN NaN NaN NaN NaN NaN 82.514 1 86.09 85.59 86.59 3.5753 0 0 0 0.38417 1 19708 19708 3.2813 0 1 + 1181 17128 748 749 1492 1492 0.13705039722026413 APIIRALK 8 Unmodified _APIIRALK_ 0 0 0 L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|52|2|sense L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|52|2|sense L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|52|2|sense MSMS UPN47_class_I_Rep_1 2 441.2996520996094 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 31.561 1 35.29 34.79 35.79 3.7293 0 0 0 0.388 1 5313 5313 12.532 0 1 1182 10000 749 750 1493 1493 0.14075262273354383 APIIRALK 8 Unmodified _APIIRALK_ 0 0 0 L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|52|2|sense L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|52|2|sense L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 441.298828125 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 31.811 1 35.28 34.78 35.78 3.4691 0 0 0 0.39996 1 5432 5432 7.9102 0 1 1183 10000 749 750 1494 1494 0.14075262273354383 APIIVPML 8 Unmodified _APIIVPML_ 0 0 0 REV__AluJo_dup52322|chr12:118341739-118342047:+|1.4469176921632347|0.0046768108599433|8.27|151.0|1|1|sense REV__AluJo_dup52322|chr12:118341739-118342047:+|1.4469176921632347|0.0046768108599433|8.27|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 427.2641906738281 2 427.264425 852.514297 NaN NaN NaN NaN NaN NaN NaN 52.327 1 55.885 55.385 56.385 3.5585 0 0 0 0.40581 1 11634 11634 2.8892 0 1 + 1184 17007 750 751 1495 1495 0.08214006524474371 APIIVPML 8 Unmodified _APIIVPML_ 0 0 0 REV__AluJo_dup52322|chr12:118341739-118342047:+|1.4469176921632347|0.0046768108599433|8.27|151.0|1|1|sense REV__AluJo_dup52322|chr12:118341739-118342047:+|1.4469176921632347|0.0046768108599433|8.27|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 427.2642822265625 2 427.264425 852.514297 NaN NaN NaN NaN NaN NaN NaN 53.006 1 56.565 56.065 57.065 3.5585 0 0 0 0.40581 1 11840 11840 2.8892 0 1 + 1185 17007 750 751 1496 1496 0.08214006524474371 APIKRHRQG 9 Unmodified _APIKRHRQG_ 0 0 0 L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|51|2|sense L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|51|2|sense L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|51|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.8169555664062 2 531.817599 1061.62064 0.33063 0.00017583 -1.0445 -0.0005555 -0.7139 -0.00037967 531.81692608386 83.508 0.21857 83.508 83.349 83.568 0 40 23 2 0 0 0 0.46434 1 19852 19852 4.3292 2.0265 1 417400 1186 14420 751 752 1497 1497 0.09229898134049108 APIKRHRQG 9 Unmodified _APIKRHRQG_ 0 0 0 L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|51|2|sense L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|51|2|sense L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|51|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 531.817599 1061.62064 0.33377 0.00017751 -1.4875 -0.00079107 -1.1537 -0.00061356 531.816754340437 80.065 0.11279 83.435 83.355 83.468 3.3694 -0.024969 -0.00020322 NaN 4.3292 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 249720 1187 14420 751 752 0.09229898134049108 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.830078125 2 553.830706 1105.64686 0.41224 0.00022831 -0.86427 -0.00047866 -0.45203 -0.00025035 553.8300251104431 85.182 0.20708 85.182 85.064 85.271 0 37 22 3 0 0 0 0.47197 1 20303 20303 3.5965 0.60125 1 407720 1188 14673 752 753 1498 1498 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.8311157226562 2 553.830706 1105.64686 0.41311 0.0002288 -1.4105 -0.00078118 -0.9974 -0.00055239 553.8298863743157 86.152 0.22731 86.152 86.031 86.258 0 26 20 2 0 0 0 0.47197 2 20586 20586;20613 3.5965 1.2938 1 239780 1189 14673 752 753 1499;1500 1499 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 554.272216796875 2 553.830706 1105.64686 0.5182 0.00028699 -0.98339 -0.00054463 -0.46519 -0.00025764 553.8297849403029 81.037 0.41264 84.599 84.336 84.748 3.5624 72 50 2 0 0 0 0.12354 1 19297 19297 3.5965 3.5965 1 182540 1190 14673 752 753 1501 1501 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 553.830706 1105.64686 0.41224 0.00022831 -0.86427 -0.00047866 -0.45203 -0.00025035 553.8300251104431 85.182 0.20708 85.182 85.064 85.271 0 0.049436 0.00040614 NaN 3.5965 37 22 3 NaN NaN NaN NaN 0 NaN NaN 0 407720 1191 14673 752 753 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 553.830706 1105.64686 0.41041 0.0002273 -1.2974 -0.00071857 -0.88704 -0.00049127 553.829902037417 84.608 0.46899 84.608 84.323 84.792 0 -0.079356 -0.00013492 NaN 3.5965 74 42 3 NaN NaN NaN NaN 0 NaN NaN 0 469600 1192 14673 752 753 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 553.830706 1105.64686 0.45905 0.00025424 -1.5627 -0.00086547 -1.1036 -0.00061123 553.8297714578332 82.751 0.5512 86.29 86.124 86.675 3.5386 0.044222 -0.00013925 NaN 3.5965 93 59 2 NaN NaN NaN NaN 0 NaN NaN 0 106340 1193 14673 752 753 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 553.830706 1105.64686 0.51481 0.00028512 -1.1314 -0.00062659 -0.61657 -0.00034148 553.8299115119315 82.608 0.17209 86.183 86.077 86.249 3.5753 -0.062573 0.0003385 NaN 3.5965 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 71549 1194 14673 752 753 0.09826167305527633 APIKRHRQT 9 Unmodified _APIKRHRQT_ 0 0 0 L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|75|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 553.830706 1105.64686 0.49108 0.00027198 -1.265 -0.00070062 -0.77395 -0.00042864 553.8298292634564 82.645 0.30589 86.314 86.134 86.44 3.669 0.068238 0.00019046 NaN 3.5965 47 37 2 NaN NaN NaN NaN 0 NaN NaN 0 88585 1195 14673 752 753 0.09826167305527633 APILLWLYHL 10 Unmodified _APILLWLYHL_ 0 0 0 HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|59|2|anti-sense HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|59|2|anti-sense HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|59|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.869140625 2 619.868434 1237.72232 0.65663 0.00040703 1.2629 0.00078283 1.9195 0.0011899 619.869115787278 90.232 0.083435 90.232 90.195 90.279 0 18 6 4 0 0 0 0.56281 1 21746 21746 1.8442 0.36234 1 673460 1196 7929 753 754 1502 1502 0.11296331713197105 APILLWLYHL 10 Unmodified _APILLWLYHL_ 0 0 0 HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|59|2|anti-sense HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|59|2|anti-sense HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8702392578125 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 87.344 1 90.981 90.481 91.481 3.6372 0 0 0 0.53105 1 21824 21824 1.8442 0.19162 1 1197 7929 753 754 1503 1503 0.11296331713197105 APKEIIPEKKV 11 Unmodified _APKEIIPEKKV_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_2 3 626.387939453125 2 626.387188 1250.75982 0.63456 0.00039748 1.242 0.00077797 1.8766 0.0011754 626.388276270105 104.74 0.23328 108.28 108.15 108.38 3.5327 66 35 2 0 0 0 0.61292 1 25420 25420 4.897 0 1 37695000 1198 3707 754 755 1504 1504 0.14447378188174298 APKEIIPEKKV 11 Unmodified _APKEIIPEKKV_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 626.3866577148438 2 626.387188 1250.75982 0.51235 0.00032093 0.5736 0.00035929 1.0859 0.00068022 626.387689476984 104.86 1.0662 108.39 108.21 109.28 3.5308 261 167 2 0 0 0 0.61292 1 25800 25800 4.897 1.3005 1 42067000 1199 3707 754 755 1505 1505 0.14447378188174298 APKKMLYI 8 Unmodified _APKKMLYI_ 0 0 0 L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|12|1|sense L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|12|1|sense L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 482.28790283203125 2 482.288431 962.562309 NaN NaN NaN NaN NaN NaN NaN 41.069 1 44.306 43.806 44.806 3.2372 0 0 0 0.4044 1 8294 8294 4.756 0 1 1200 10592 755 756 1506 1506 0.07953080444519856 APKPNLQVP 9 Unmodified _APKPNLQVP_ 0 0 0 REV__HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|5|1|sense REV__HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 482.2845458984375 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 35.733 1 39.4 38.9 39.9 3.6667 0 0 0 0.39518 1 5833 5833 1.8442 1.0506 1 + 1201 23352 756 757 1507 1507 0.07214064168465484 APLAARTRT 9 Unmodified _APLAARTRT_ 0 0 0 REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 478.7852478027344 2 478.785433 955.556313 0.26337 0.0001261 0.12442 5.9572E-05 0.38779 0.00018567 478.78541141118154 86.648 0.51093 86.648 86.546 87.056 0 88 51 2 0 0 0 0.42249 1 20717 20717 6.7232 0 1 1005900 + 1202 21786 757 758 1508 1508 0.07675698257230579 APLAARTRT 9 Unmodified _APLAARTRT_ 0 0 0 REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 478.785433 955.556313 0.17674 8.4619E-05 -0.19103 -9.1464E-05 -0.014296 -6.8448E-06 478.7853215596349 83.276 0.6094 86.815 86.476 87.086 3.5386 0.13104 -0.00012126 NaN 6.7232 105 62 2 NaN NaN NaN NaN 0 NaN NaN 0 178300 + 1203 21786 757 758 0.07675698257230579 APLDLRLRRE 10 Unmodified _APLDLRLRRE_ 0 0 0 REV__ENST00000409411.5_3_2:44588589-44588649:-|nuORF REV__ENST00000409411.5_3_2:44588589-44588649:-|nuORF MSMS UPN46_class_I_Rep_3 1 619.8698120117188 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 89.014 1 89.014 88.514 89.514 0 0 0 0 0.53105 1 21400 21400 1.3295 0 1 + 1204 22179 758 759 1509 1509 0.11614974819917734 APLIKIAR 8 Unmodified _APLIKIAR_ 0 0 0 REV__Charlie1a_dup4190|chr12:50154373-50154695:+|1.1169189202663568|0.0237217862485451|5.56|151.0|4|2|sense REV__Charlie1a_dup4190|chr12:50154373-50154695:+|1.1169189202663568|0.0237217862485451|5.56|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 441.2980651855469 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 31.744 1 35.213 34.713 35.713 3.4691 0 0 0 0.37214 1 5411 5411 16.942 0 1 + 1205 17326 759 760 1510 1510 0.14075262273365752 APLILGFML 9 Unmodified _APLILGFML_ 0 0 0 ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 MULTI-MSMS UPN47_class_I_Rep_1 2 487.7906799316406 2 487.790807 973.56706 0.15499 7.5601E-05 -0.23984 -0.00011699 -0.084856 -4.1392E-05 487.7905283197865 76.445 0.27274 79.86 79.663 79.936 3.4149 28 23 2 0 0 0 0.48414 1 18922 18922 2.3027 0 1 276450 1206 728 760 761 1511 1511 0.07921964587308139 APLILGFML 9 Unmodified _APLILGFML_ 0 0 0 ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 487.790807 973.56706 0.2705 0.00013195 -0.20048 -9.779E-05 0.070022 3.4156E-05 487.7906137379607 79.868 0.25314 79.868 79.778 80.031 0 -0.048213 -2.9E-05 NaN 2.3027 39 23 2 NaN NaN NaN NaN 0 NaN NaN 0 73748 1207 728 760 761 0.07921964587308139 APLILGFML 9 Unmodified _APLILGFML_ 0 0 0 ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 487.790807 973.56706 0.17729 8.6482E-05 0.091345 4.4557E-05 0.26864 0.00013104 487.79070381932297 76.511 0.073784 80.022 79.992 80.065 3.5102 0.10496 0.00025569 NaN 2.3027 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 64352 1208 728 760 761 0.07921964587308139 APLLKEKRYK 10 Unmodified _APLLKEKRYK_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 623.38720703125 2 623.387522 1244.76049 0.67281 0.00041942 0.35641 0.00022218 1.0292 0.00064161 623.3876590941178 108.82 0.90051 108.82 108.68 109.58 0 153 69 4 0 0 0 0.41718 1 26709 26709 18.146 9.4009 1 24422000 + 1209 29558 761 762 1512 1512 0.14790217627864877 APLLKEKRYK 10 Unmodified _APLLKEKRYK_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 623.3880004882812 2 623.387522 1244.76049 0.55239 0.00034435 0.30588 0.00019068 0.85827 0.00053504 623.3875840128705 108.69 0.30182 112.32 112.17 112.48 3.6355 85 31 4 0 0 0 0.48573 1 26740 26740 13.042 0.80181 1 40180000 + 1210 29558 761 762 1513 1513 0.14790217627864877 APLLKEKRYK 10 Unmodified _APLLKEKRYK_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 623.3880004882812 2 623.387522 1244.76049 0.63471 0.00039567 0.47173 0.00029407 1.1064 0.00068974 623.3876781048372 108.68 0.83012 112.21 112.11 112.94 3.5333 205 98 4 0 0 0 0.48573 2 26417 26417;26477 13.042 4.2971 1 31049000 + 1211 29558 761 762 1514;1515 1514 0.14790217627864877 APLLKEKRYK 10 Unmodified _APLLKEKRYK_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 623.3882446289062 2 623.387522 1244.76049 0.51208 0.00031923 0.49894 0.00031103 1.011 0.00063026 623.3876893850237 108.68 0.46742 112.22 112.09 112.56 3.5382 136 52 3 0 0 0 0.48573 1 26648 26648 13.042 4.8869 1 27713000 + 1212 29558 761 762 1516 1516 0.14790217627864877 APLLKEKRYK 10 Unmodified _APLLKEKRYK_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 623.3880004882812 2 623.387522 1244.76049 0.42655 0.00026591 0.34206 0.00021323 0.76861 0.00047914 623.3875957712019 108.68 0.57268 112.31 112.19 112.76 3.6321 164 67 4 0 0 0 0.52562 2 26376 26279;26376 8.7454 0.58988 1 22086000 + 1213 29558 761 762 1517;1518 1518 0.14790217627864877 APLLKEKRYK 10 Unmodified _APLLKEKRYK_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|65|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 623.3877563476562 2 623.387522 1244.76049 0.49383 0.00030785 0.33427 0.00020838 0.8281 0.00051623 623.3875320177227 108.72 0.62381 112.39 112.23 112.85 3.6746 140 65 3 0 0 0 0.48573 2 25780 25780;25883 13.042 4.2971 1 17460000 + 1214 29558 761 762 1519;1520 1519 0.14790217627864877 APLLLLYLC 9 Unmodified _APLLLLYLC_ 0 0 0 REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 509.80401611328125 2 509.803914 1017.59328 0.31712 0.00016167 -0.36251 -0.00018481 -0.045393 -2.3141E-05 509.8036139623842 88.472 0.51157 92.21 91.947 92.459 3.7379 90 67 2 0 0 0 0.48414 1 21051 21051 2.3027 0 1 86173 + 1215 25690 762 763 1521 1521 0.08518233758752558 APLLLLYLC 9 Unmodified _APLLLLYLC_ 0 0 0 REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 509.803914 1017.59328 0.31831 0.00016228 -0.29294 -0.00014934 0.025371 1.2934E-05 509.80369221925514 92.378 0.094376 92.378 92.343 92.438 0 0.15153 4.6508E-05 NaN 2.3027 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 67881 + 1216 25690 762 763 0.08518233758752558 APLLLLYLC 9 Unmodified _APLLLLYLC_ 0 0 0 REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 509.803914 1017.59328 0.27693 0.00014118 0.086815 4.4259E-05 0.36375 0.00018544 509.8037378297723 88.545 0.027969 91.997 91.98 92.008 3.4525 -0.22956 0.00043371 NaN 2.3027 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 35056 + 1217 25690 762 763 0.08518233758752558 APLLLLYLC 9 Unmodified _APLLLLYLC_ 0 0 0 REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 509.803914 1017.59328 0.31105 0.00015857 -0.33602 -0.00017131 -0.024977 -1.2733E-05 509.80330352883493 88.92 0.099724 92.313 92.29 92.39 3.3931 0.086313 2.5791E-06 NaN 2.3027 11 10 2 NaN NaN NaN NaN 0 NaN NaN 0 29749 + 1218 25690 762 763 0.08518233758752558 APLLLLYLC 9 Unmodified _APLLLLYLC_ 0 0 0 REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|75|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 509.803914 1017.59328 0.23324 0.00011891 -0.33326 -0.0001699 -0.10002 -5.0989E-05 509.8037494188485 88.613 0.19181 92.235 92.186 92.377 3.6229 0.0085436 5.401E-06 NaN 2.3027 27 24 2 NaN NaN NaN NaN 0 NaN NaN 0 88183 + 1219 25690 762 763 0.08518233758752558 APLLVRPPPWG 11 Unmodified _APLLVRPPPWG_ 0 0 0 REV__ENST00000531505.1_1_11:44102670-44102868:+|nuORF REV__ENST00000531505.1_1_11:44102670-44102868:+|nuORF MSMS UPN48_class_I_Rep_3 7 601.8572998046875 2 601.855858 1201.69716 NaN NaN NaN NaN NaN NaN NaN 94.921 1 98.823 98.323 99.323 3.9016 0 0 0 0.38417 1 22496 22496 1.3295 0.36726 1 + 1220 22857 763 764 1522 1522 0.10438276910645072 APLPFHNHV 9 Unmodified _APLPFHNHV_ 0 0 0 LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|159|1|anti-sense LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|159|1|anti-sense LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|159|1|anti-sense MSMS UPN47_class_I_Rep_3 4 516.275146484375 2 516.274701 1030.53485 NaN NaN NaN NaN NaN NaN NaN 19.007 1 22.362 21.862 22.862 3.3545 0 0 0 0.40038 1 1696 1696 0.6015 0 1 1221 15606 764 765 1523 1523 0.020803132284981984 APLQVVFVN 9 Unmodified _APLQVVFVN_ 0 0 0 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS UPN46_class_I_Rep_3 1 493.78656005859375 2 493.78711 985.559667 0.30429 0.00015026 -1.2075 -0.00059624 -0.90318 -0.00044598 493.78646273678254 109.73 0.21741 109.73 109.63 109.85 0 28 18 2 0 0 0 0.41259 1 26953 26953 7.2892 2.5332 1 1156200 + 1222 17837 765 766 1524 1524 0.06630948311237717 APLQVVFVN 9 Unmodified _APLQVVFVN_ 0 0 0 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS UPN47_class_I_Rep_3 4 493.7874450683594 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.34 1 112.87 112.37 113.37 3.5347 0 0 0 0.36505 1 26859 26859 7.2892 0 1 + 1223 17837 765 766 1525 1525 0.06630948311237717 APLRLAIFFF 10 Unmodified _APLRLAIFFF_ 0 0 0 AluJb_dup23476|chr3:50096207-50096492:+|1.6338772411042308|0.3119707115575019|2.39|151.0|21|3|anti-sense AluJb_dup23476|chr3:50096207-50096492:+|1.6338772411042308|0.3119707115575019|2.39|151.0|21|3|anti-sense AluJb_dup23476|chr3:50096207-50096492:+|1.6338772411042308|0.3119707115575019|2.39|151.0|21|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 597.8572998046875 2 597.855327 1193.6961 0.57534 0.00034397 1.585 0.00094757 2.1603 0.0012915 597.8561387250852 88.13 0.13803 88.13 88.072 88.21 0 19 10 2 0 0 0 0.84575 1 21174 21174 1.6526 1.6526 1 310650 1224 38 766 767 1526 1526 0.1070006254171858 APNLKSQL 8 Unmodified _APNLKSQL_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MSMS UPN47_class_I_Rep_1 2 435.7557373046875 2 435.75581 869.497067 -0.41183 -0.00017946 0.62789 0.0002736 0.21605 9.4145E-05 435.75597145961007 31.75 0.61157 35.48 35.242 35.854 3.7293 86 47 3 0 0 0 0.82752 3 5337 5337;5379;5419 27.629 2.6378 1 166320 1225 3006 767 768 1527;1528;1529 1527 0.05709802243052309 APNLKSQL 8 Unmodified _APNLKSQL_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MSMS UPN47_class_I_Rep_2 3 435.7557067871094 2 435.75581 869.497067 -0.75618 -0.00032951 0.60775 0.00026483 -0.14843 -6.4679E-05 435.756053380138 32.05 0.6839 35.519 35.191 35.875 3.4691 85 48 2 0 0 0 0.82752 2 5493 5493;5532 16.149 1.3108 1 143350 1226 3006 767 768 1530;1531 1530 0.05709802243052309 APNLKSQL 8 Unmodified _APNLKSQL_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MSMS UPN47_class_I_Rep_3 4 435.7557373046875 2 435.75581 869.497067 -0.99312 -0.00043276 0.76683 0.00033415 -0.22629 -9.8607E-05 435.75606148711904 32.23 0.68403 35.516 35.189 35.873 3.2867 93 50 3 0 0 0 0.82752 2 5551 5551;5594 41.84 3.6641 1 118750 1227 3006 767 768 1532;1533 1532 0.05709802243052309 APNLKSQL 8 Unmodified _APNLKSQL_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 435.75581 869.497067 -0.75618 -0.00032951 0.60775 0.00026483 -0.14843 -6.4679E-05 435.756053380138 32.05 0.6839 35.519 35.191 35.875 3.4691 0.014105 -4.8123E-05 NaN 16.149 85 48 2 NaN NaN NaN NaN 0 NaN NaN 0 143350 1228 3006 767 768 0.05709802243052309 APNNLWLVGF 10 Unmodified _APNNLWLVGF_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 565.8027954101562 2 565.803291 1129.59203 0.49029 0.00027741 -0.14562 -8.2395E-05 0.34467 0.00019501 565.803105350898 67.398 0.6337 70.85 70.509 71.143 3.4516 78 43 3 0 0 0 0.40227 4 15497 15415;15457;15497;15516 19.257 2.1441 1 237880 1229 13728 768 769 1534;1535;1536;1537 1536 0.032417357142321634 APNNLWLVGF 10 Unmodified _APNNLWLVGF_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 566.304931640625 2 565.803291 1129.59203 0.49029 0.00027741 -0.14562 -8.2395E-05 0.34467 0.00019501 565.803105350898 67.398 0.6337 70.85 70.509 71.143 3.4516 78 43 3 0 0 0 0.84575 1 15457 15457 13.906 1.6654 1 237880 1230 13728 768 769 1538 1538 0.032417357142321634 APNNLWLVGF 10 Unmodified _APNNLWLVGF_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 565.8027954101562 2 565.803291 1129.59203 0.50466 0.00028554 -0.23649 -0.00013381 0.26818 0.00015173 565.8031070098161 67.277 0.72882 70.773 70.31 71.039 3.4964 80 50 2 0 0 0 0.38932 3 15452 15330;15366;15452 20.454 2.1441 1 188410 1231 13728 768 769 1539;1540;1541 1541 0.032417357142321634 APNNLWLVGF 10 Unmodified _APNNLWLVGF_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|326|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 565.8030395507812 2 565.803291 1129.59203 0.49213 0.00027845 -0.24712 -0.00013982 0.24501 0.00013863 565.8031443336037 67.085 0.64938 70.593 70.251 70.901 3.5077 87 46 2 0 0 0 0.33585 2 15277 15277;15323 25.399 2.663 1 231270 1232 13728 768 769 1542;1543 1542 0.032417357142321634 APNVLPRT 8 Unmodified _APNVLPRT_ 0 0 0 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 MSMS UPN48_class_I_Rep_1 5 434.2576599121094 2 434.255977 866.497401 NaN NaN NaN NaN NaN NaN NaN 104.89 1 108.52 108.02 109.02 3.6247 0 0 0 0.40472 1 25273 25273 4.3292 0 1 1233 5622 769 770 1544 1544 0.05881221962908967 APPAGPGPATF 11 Unmodified _APPAGPGPATF_ 0 0 0 ENSG00000185155|ENST00000366810|MIXL1;nc|ENSG00000185155|Q9H2W2-2|MIXL1 ENSG00000185155|ENST00000366810|MIXL1 ENSG00000185155|ENST00000366810|MIXL1 MSMS UPN47_class_I_Rep_2 3 491.751708984375 2 491.753267 981.491981 NaN NaN NaN NaN NaN NaN NaN 27.146 1 30.644 30.144 31.144 3.4986 0 0 0 0.38417 1 4032 4032 3.2813 0.70383 1 1234 5087 770 771 1545 1545 0.0004949838041738985 APPLRYFSH 9 Unmodified _APPLRYFSH_ 0 0 0 REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|102|3|sense REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|102|3|sense MSMS UPN48_class_I_Rep_1 5 544.2219848632812 2 544.287808 1086.56106 NaN NaN NaN NaN NaN NaN NaN 115.7 1 119.33 118.83 119.83 3.6282 0 0 0 0.39428 1 28158 28158 2.0598 0 1 + 1235 23702 771 772 1546 1546 0.021245824000061475 APPPFRLF 8 Unmodified _APPPFRLF_ 0 0 0 REV__ENST00000544944.6_1_19:45542792-45543053:+|nuORF REV__ENST00000544944.6_1_19:45542792-45543053:+|nuORF MSMS UPN46_class_I_Rep_3 1 472.2822265625 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 97.719 1 97.719 97.219 98.219 0 0 0 0 0.40738 1 23785 23785 0.79363 0 1 + 1236 22932 772 773 1547 1547 0.05395000347948553 APPPMAPPFV 10 Unmodified _APPPMAPPFV_ 0 0 0 REV__nc|ENSG00000100505|Q9C026-5|TRIM9 REV__nc|ENSG00000100505|Q9C026-5|TRIM9 MSMS UPN46_class_I_Rep_3 1 512.2719116210938 2 512.270238 1022.52592 NaN NaN NaN NaN NaN NaN NaN 94.808 1 94.808 94.308 95.308 0 0 0 0 0.53105 1 23003 23003 1.8442 0.36234 1 + 1237 18118 773 774 1548 1548 0.015562035478183134 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.2511901855469 2 435.251226 868.487899 0.14708 6.4018E-05 -0.18098 -7.8772E-05 -0.033898 -1.4754E-05 435.2510662705248 86.739 0.54129 86.739 86.494 87.035 0 144 55 3 0 0 0 0.82752 2 20739 20739;20776 4.3292 4.3292 1 2310000 + 1238 21982 774 775 1549;1550 1549 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.2510070800781 2 435.251226 868.487899 0.082074 3.5723E-05 -0.30103 -0.00013102 -0.21895 -9.5299E-05 435.25099516946403 83.473 0.76189 87.012 86.667 87.429 3.5386 242 88 3 0 0 0 0.82752 1 20857 20857 4.3292 2.0265 1 776410 + 1239 21982 774 775 1551 1551 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.2511291503906 2 435.251226 868.487899 -0.2739 -0.00011921 0.13128 5.714E-05 -0.14262 -6.2074E-05 435.2511882712124 83.482 0.92743 86.894 86.581 87.509 3.4116 278 115 3 0 0 0 0.82752 2 20819 20819;20853 4.3292 2.0265 1 640250 + 1240 21982 774 775 1552;1553 1552 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.2511291503906 2 435.251226 868.487899 -0.36918 -0.00016069 0.23233 0.00010112 -0.13685 -5.9564E-05 435.25123839992966 83.53 0.79408 86.88 86.533 87.327 3.35 247 94 3 0 0 0 0.82752 1 20988 20988 4.3292 4.3292 1 562030 + 1241 21982 774 775 1554 1554 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.2509460449219 2 435.251226 868.487899 -0.036286 -1.5794E-05 -0.098252 -4.2764E-05 -0.13454 -5.8558E-05 435.2510779314976 83.301 0.85068 86.888 86.435 87.286 3.5871 256 98 3 0 0 0 0.82752 2 19866 19866;19900 4.3292 4.3292 1 765530 + 1242 21982 774 775 1555;1556 1555 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 435.2510681152344 2 435.251226 868.487899 0.10031 4.3661E-05 -0.17042 -7.4176E-05 -0.070109 -3.0515E-05 435.2510371791517 83.202 0.90733 86.884 86.502 87.409 3.6814 273 106 3 0 0 0 0.82752 3 19721 19721;19756;19785 4.3292 4.3292 1 849760 + 1243 21982 774 775 1557;1558;1559 1557 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.25115966796875 2 435.251226 868.487899 0.16643 7.2438E-05 -0.23364 -0.00010169 -0.067216 -2.9256E-05 435.2510198284562 83.21 0.79605 86.917 86.498 87.294 3.7066 264 105 3 0 0 0 0.82752 2 19710 19710;19739 7.9102 7.9102 1 895300 + 1244 21982 774 775 1560;1561 1560 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 435.251226 868.487899 0.14714 6.4043E-05 -0.31086 -0.0001353 -0.16372 -7.126E-05 435.2509785706599 87.078 0.35141 87.078 87.028 87.379 0 0.14232 -0.00021207 NaN 7.9102 69 34 3 NaN NaN NaN NaN 0 NaN NaN 0 469540 + 1245 21982 774 775 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 435.251226 868.487899 -0.2739 -0.00011921 0.13128 5.714E-05 -0.14262 -6.2074E-05 435.2511882712124 83.482 0.92743 86.894 86.581 87.509 3.4116 -0.042173 0.00017281 NaN 7.9102 278 115 3 NaN NaN NaN NaN 0 NaN NaN 0 640250 + 1246 21982 774 775 0.04839453677379879 APPTRRTA 8 Unmodified _APPTRRTA_ 0 0 0 REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 435.251226 868.487899 -0.36918 -0.00016069 0.23233 0.00010112 -0.13685 -5.9564E-05 435.25123839992966 83.53 0.79408 86.88 86.533 87.327 3.35 -0.056177 0.00026078 NaN 7.9102 247 94 3 NaN NaN NaN NaN 0 NaN NaN 0 562030 + 1247 21982 774 775 0.04839453677379879 APPVSHKYI 9 Unmodified _APPVSHKYI_ 0 0 0 REV__MER34_dup1109|chr16:24946522-24946921:+|1.1932509002753788|0.1746942457055576|2.77|150.0|8|2|sense REV__MER34_dup1109|chr16:24946522-24946921:+|1.1932509002753788|0.1746942457055576|2.77|150.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 506.2669372558594 2 506.284734 1010.55492 NaN NaN NaN NaN NaN NaN NaN 73.621 1 76.858 76.358 77.358 3.2363 0 0 0 0.38784 1 18192 18192 3.5965 0.70727 1 + 1248 31263 775 776 1562 1562 0.05006064168458124 APQIVAVKAPN 11 Unmodified _APQIVAVKAPN_ 0 0 0 nc|ENSG00000141384|Q92750-2|TAF4B;ENSG00000141384|ENST00000269142|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B MULTI-MSMS UPN47_class_I_Rep_2 3 554.329833984375 2 554.329673 1106.64479 0.63305 0.00035092 -0.076859 -4.2605E-05 0.55619 0.00030831 554.3293745613953 110.58 0.2029 114.11 114.05 114.25 3.5271 42 25 3 0 0 0 0.67264 1 26913 26913 1.1933 0.39971 1 313480 1249 3217 776 777 1563 1563 0.09573693777042536 APQIVAVKAPN 11 Unmodified _APQIVAVKAPN_ 0 0 0 nc|ENSG00000141384|Q92750-2|TAF4B;ENSG00000141384|ENST00000269142|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B MULTI-MATCH UPN46_class_I_Rep_3 1 2 554.329673 1106.64479 0.41517 0.00023014 -0.52391 -0.00029042 -0.10874 -6.0279E-05 554.3289703428131 113.73 0.033707 113.73 113.72 113.75 0 -0.072432 -0.00053872 NaN 1.1933 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 114040 1250 3217 776 777 0.09573693777042536 APQIVAVKAPN 11 Unmodified _APQIVAVKAPN_ 0 0 0 nc|ENSG00000141384|Q92750-2|TAF4B;ENSG00000141384|ENST00000269142|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B MULTI-MATCH UPN48_class_I_Rep_1 5 2 554.329673 1106.64479 0.4894 0.00027129 0.28877 0.00016007 0.77817 0.00043136 554.3298718818012 110.16 0.069885 113.79 113.75 113.82 3.6326 -0.0096433 0.00036227 NaN 1.1933 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 228250 1251 3217 776 777 0.09573693777042536 APQIVAVKAPN 11 Unmodified _APQIVAVKAPN_ 0 0 0 nc|ENSG00000141384|Q92750-2|TAF4B;ENSG00000141384|ENST00000269142|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B nc|ENSG00000141384|Q92750-2|TAF4B MULTI-MATCH UPN48_class_I_Rep_2 6 2 554.329673 1106.64479 0.49508 0.00027443 -0.17311 -9.5961E-05 0.32196 0.00017847 554.329221200585 109.91 0.034935 113.58 113.56 113.6 3.6715 -0.22389 -0.0001498 NaN 1.1933 8 2 4 NaN NaN NaN NaN 0 NaN NaN 0 1417800 1252 3217 776 777 0.09573693777042536 APQRRWRLR 9 Unmodified _APQRRWRLR_ 0 0 0 ENST00000472291.1_1_22:39928247-39928743:-|nuORF ENST00000472291.1_1_22:39928247-39928743:-|nuORF ENST00000472291.1_1_22:39928247-39928743:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 620.3710327148438 2 619.870697 1237.72684 0.49253 0.0003053 -4.2203 -0.0026161 -3.7278 -0.0023108 619.8674351919896 98.247 0.079933 102.02 101.95 102.03 3.7707 14 10 2 0 0 0 0.48846 1 23332 23332 1.8442 0.36234 1 244390 1253 6933 777 778 1564 1564 0.11748653699328315 APQRRWRLR 9 Unmodified _APQRRWRLR_ 0 0 0 ENST00000472291.1_1_22:39928247-39928743:-|nuORF ENST00000472291.1_1_22:39928247-39928743:-|nuORF ENST00000472291.1_1_22:39928247-39928743:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 619.870697 1237.72684 0.65557 0.00040637 -1.5967 -0.00098978 -0.94117 -0.00058341 619.8695390104238 102.4 0.027863 102.4 102.38 102.4 0 0.18983 0.0024176 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 42864 1254 6933 777 778 0.11748653699328315 APRPLKKRS 9 Unmodified _APRPLKKRS_ 0 0 0 nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;ENST00000555391.5_1_14:104201493-104210315:-|nuORF;ENSG00000088808|ENST00000202556|PPP1R13B nc|ENSG00000143514|Q13625-2|TP53BP2 nc|ENSG00000143514|Q13625-2|TP53BP2 MSMS UPN48_class_I_Rep_3 7 526.8377075195312 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 113.17 1 116.82 116.32 117.32 3.6568 0 0 0 0.4007 1 26904 26904 0.52476 0 1 1255 3307 778 779 1565 1565 0.13768239453634123 APRRRRQWL 9 Unmodified _APRRRRQWL_ 0 0 0 REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF MSMS UPN47_class_I_Rep_1 2 619.8703002929688 2 619.870697 1237.72684 NaN NaN NaN NaN NaN NaN NaN 86.023 1 89.639 89.139 90.139 3.6153 0 0 0 0.4007 1 21483 21483 0.52476 0.066424 1 + 1256 22764 779 780 1566 1566 0.11748653699351053 APRRRRQWL 9 Unmodified _APRRRRQWL_ 0 0 0 REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF MSMS UPN47_class_I_Rep_3 4 619.8707275390625 2 619.870697 1237.72684 NaN NaN NaN NaN NaN NaN NaN 89.081 1 92.474 91.974 92.974 3.3931 0 0 0 0.4007 1 22339 22339 0.52476 0.12405 1 + 1257 22764 779 780 1567 1567 0.11748653699351053 APRRTFRK 8 Unmodified _APRRTFRK_ 0 0 0 REV__ENST00000447147.5_1_13:30941833-30947955:-|nuORF REV__ENST00000447147.5_1_13:30941833-30947955:-|nuORF MSMS UPN48_class_I_Rep_1 5 515.9779663085938 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 103.09 1 106.71 106.21 107.21 3.6164 0 0 0 0.40738 1 24852 24852 0.79363 0 1 + 1258 22367 780 781 1568 1568 0.10074799622339015 APRSQSRNY 9 Unmodified _APRSQSRNY_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|368|2|anti-sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|368|2|anti-sense MSMS UPN47_class_I_Rep_1 2 539.774169921875 2 539.773054 1077.53155 NaN NaN NaN NaN NaN NaN NaN 69.827 1 73.195 72.695 73.695 3.3678 0 0 0 0.37476 1 16940 16940 6.7232 0.36906 1 + 1259 23535 781 782 1569 1569 -0.004109816161417257 APRWRVRR 8 Unmodified _APRWRVRR_ 0 0 0 REV__ENST00000439880.6_1_20:3777111-3778370:+|nuORF REV__ENST00000439880.6_1_20:3777111-3778370:+|nuORF MSMS UPN46_class_I_Rep_3 1 548.8348999023438 2 548.833583 1095.65261 NaN NaN NaN NaN NaN NaN NaN 29.127 1 29.127 28.627 29.627 0 0 0 0 0.40746 1 4571 4571 0.69038 0.088878 1 + 1260 22325 782 783 1570 1570 0.1086131060783373 APSPLWSLNF 10 Unmodified _APSPLWSLNF_ 0 0 0 ENST00000474550.5_1_2:101587368-101598935:+|nuORF ENST00000474550.5_1_2:101587368-101598935:+|nuORF ENST00000474550.5_1_2:101587368-101598935:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 564.7899780273438 2 566.295299 1130.57605 0.46667 0.00026428 0.42193 0.00023894 0.8886 0.00050321 566.295194583641 69.441 0.98286 72.896 72.409 73.392 3.4548 122 67 3 0 0 0 0.54466 1 16179 16179 6.2058 2.0163 1 497870 1261 6949 783 784 1571 1571 0.015980294773271453 APTRPLQRKQ 10 Unmodified _APTRPLQRKQ_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 597.8557739257812 2 597.856921 1193.69929 0.53383 0.00031915 -0.74772 -0.00044703 -0.21389 -0.00012788 597.8560335386833 83.491 0.48811 86.903 86.655 87.143 3.4116 85 59 2 0 0 0 0.56354 1 20834 20834 1.3295 0.80477 1 91040 1262 3888 784 785 1572 1572 0.11018705648461946 APVMEELVVGF 11 Unmodified _APVMEELVVGF_ 0 0 0 REV__L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|147|2|anti-sense REV__L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|147|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 596.1531372070312 2 595.809925 1189.6053 0.51629 0.00030761 4.1221 0.002456 4.6384 0.0027636 595.8119401285434 53.096 0.10056 56.423 56.38 56.48 3.3266 5 4 2 0 0 0 22.551 1 11907 11907 5.2969 0.96765 1 36945 + 1263 30174 785 786 1573 1573 0.018078057112916213 APVNILAQIL 10 Unmodified _APVNILAQIL_ 0 0 0 L1ME2z_dup385|chr1:206708334-206709132:-|3.324900325403711|0.044965395786139|6.21|151.0|53|3|anti-sense L1ME2z_dup385|chr1:206708334-206709132:-|3.324900325403711|0.044965395786139|6.21|151.0|53|3|anti-sense L1ME2z_dup385|chr1:206708334-206709132:-|3.324900325403711|0.044965395786139|6.21|151.0|53|3|anti-sense MSMS UPN46_class_I_Rep_3 1 526.3267822265625 2 526.329142 1050.64373 NaN NaN NaN NaN NaN NaN NaN 107.49 1 107.49 106.99 107.99 0 0 0 0 0.53105 1 26219 26219 10.074 3.3508 1 1264 12565 786 787 1574 1574 0.12043479408134772 APVQSKQI 8 Unmodified _APVQSKQI_ 0 0 0 REV__ENSG00000165156|ENST00000395571|ZHX1 REV__ENSG00000165156|ENST00000395571|ZHX1 MULTI-MSMS UPN47_class_I_Rep_2 3 435.756103515625 2 435.75581 869.497067 -0.75618 -0.00032951 0.60775 0.00026483 -0.14843 -6.4679E-05 435.756053380138 32.05 0.6839 35.519 35.191 35.875 3.4691 85 48 2 0 0 0 0.82752 1 5454 5454 5.7319 0 1 143350 + 1265 20105 787 788 1575 1575 0.05709802243052309 APWLGGGGW 9 Unmodified _APWLGGGGW_ 0 0 0 ENST00000505490.2_1_17:79845892-79845988:-|nuORF ENST00000505490.2_1_17:79845892-79845988:-|nuORF ENST00000505490.2_1_17:79845892-79845988:-|nuORF MSMS UPN47_class_I_Rep_1 2 450.7599792480469 2 450.72177 899.428987 NaN NaN NaN NaN NaN NaN NaN 119.66 1 123.26 122.76 123.76 3.6036 0 0 0 0.381 1 29743 29743 5.2307 2.3415 1 1266 7149 788 789 1576 1576 -0.02475022616943079 APWLGGGGW 9 Unmodified _APWLGGGGW_ 0 0 0 ENST00000505490.2_1_17:79845892-79845988:-|nuORF ENST00000505490.2_1_17:79845892-79845988:-|nuORF ENST00000505490.2_1_17:79845892-79845988:-|nuORF MSMS UPN47_class_I_Rep_3 4 450.7617492675781 2 450.72177 899.428987 NaN NaN NaN NaN NaN NaN NaN 117.43 1 120.87 120.37 121.37 3.4425 0 0 0 0.39326 1 28931 28931 2.3027 0 1 1267 7149 788 789 1577 1577 -0.02475022616943079 APWRAGPCWR 10 Unmodified _APWRAGPCWR_ 0 0 0 ENST00000431582.6_1_X:2527436-2533991:+|nuORF ENST00000431582.6_1_X:2527436-2533991:+|nuORF ENST00000431582.6_1_X:2527436-2533991:+|nuORF MSMS UPN46_class_I_Rep_3 1 600.2997436523438 2 600.298185 1198.58182 NaN NaN NaN NaN NaN NaN NaN 64.755 1 64.755 64.255 65.255 0 0 0 0 0.53105 1 14597 14597 1.4819 0.15237 1 1268 6730 789 790 1578 1578 -0.009531504920232692 APWSVIDQQA 10 Unmodified _APWSVIDQQA_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2 ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 558.2833862304688 2 557.780013 1113.54547 0.23884 0.00013322 -0.27237 -0.00015192 -0.033523 -1.8698E-05 557.7800174182983 49.466 1.7106 53.125 52.626 54.337 3.6592 264 100 4 0 0 0 0.56189 1 11072 11072 2.4985 0.65425 1 1646500 1269 4705 790 791 1579 1579 -0.006757489077244827 APWSVIDQQA 10 Unmodified _APWSVIDQQA_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2 ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 558.2831420898438 2 557.780013 1113.54547 0.4313 0.00024057 -0.44709 -0.00024938 -0.015783 -8.8032E-06 557.7799172716495 49.831 1.9242 53.174 52.684 54.608 3.3431 262 106 4 0 0 0 0.56189 1 11216 11216 2.4985 2.4985 1 1381000 1270 4705 790 791 1580 1580 -0.006757489077244827 AQAPAQSQF 9 Unmodified _AQAPAQSQF_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MSMS UPN46_class_I_Rep_3 1 474.2823486328125 2 474.232699 946.450845 NaN NaN NaN NaN NaN NaN NaN 35.526 1 35.526 35.026 36.026 0 0 0 0 0.27207 1 6478 6478 12.241 4.9514 1 1271 697 791 792 1581 1581 -0.024522626590396612 AQAQRPTLHST 11 Unmodified _AQAQRPTLHST_ 0 0 0 REV__ENSG00000177673|ENST00000313965|TEX44 REV__ENSG00000177673|ENST00000313965|TEX44 MSMS UPN46_class_I_Rep_3 1 605.319091796875 2 605.320368 1208.62618 NaN NaN NaN NaN NaN NaN NaN 66.089 1 66.089 65.589 66.589 0 0 0 0 0.38417 1 14976 14976 2.7352 0.67545 1 + 1272 20628 792 793 1582 1582 0.030215321351761304 AQCFLELCMC 10 Unmodified _AQCFLELCMC_ 0 0 0 MER50_dup2282|chr18:2911021-2911648:-|1.3176201855723093|0.2176468876096884|2.6|151.0|26|2|anti-sense MER50_dup2282|chr18:2911021-2911648:-|1.3176201855723093|0.2176468876096884|2.6|151.0|26|2|anti-sense MER50_dup2282|chr18:2911021-2911648:-|1.3176201855723093|0.2176468876096884|2.6|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_3 4 580.732666015625 2 580.733991 1159.45343 NaN NaN NaN NaN NaN NaN NaN 23.968 1 27.319 26.819 27.819 3.3509 0 0 0 0.53105 1 3138 3138 1.6526 0 1 1273 16052 793 794 1583 1583 -0.11991957903910588 AQEDDWYDC 9 Unmodified _AQEDDWYDC_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS UPN48_class_I_Rep_2 6 572.696533203125 2 572.698029 1143.3815 NaN NaN NaN NaN NaN NaN NaN 34.759 1 38.433 37.933 38.933 3.6735 0 0 0 0.39518 1 5640 5640 1.8442 1.0506 1 1274 995 794 795 1584 1584 -0.18445134460785084 AQEFEISLSNM 11 Unmodified _AQEFEISLSNM_ 0 0 0 AluJb_dup77072|chr11:33887541-33887873:-|2.1753386334112497|0.0041169730027185|9.05|151.0|9|3|sense AluJb_dup77072|chr11:33887541-33887873:-|2.1753386334112497|0.0041169730027185|9.05|151.0|9|3|sense AluJb_dup77072|chr11:33887541-33887873:-|2.1753386334112497|0.0041169730027185|9.05|151.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 634.7960205078125 2 634.795003 1267.57545 NaN NaN NaN NaN NaN NaN NaN 65.765 1 69.122 68.622 69.622 3.3576 0 0 0 0.38417 1 15708 15708 2.4985 0.43874 1 1275 67 795 796 1585 1585 -0.047631780246774724 AQELLYIYY 9 Unmodified _AQELLYIYY_ 0 0 0 nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF nc|ENSG00000164077|Q86VX9-2|MON1A nc|ENSG00000164077|Q86VX9-2|MON1A MSMS UPN47_class_I_Rep_1 2 588.30224609375 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 72.234 1 75.614 75.114 76.114 3.3799 0 0 0 0.38299 1 17662 17662 4.756 0.42677 1 1276 4076 796 797 1586 1586 0.01071476554648143 AQELLYIYY 9 Unmodified _AQELLYIYY_ 0 0 0 nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF nc|ENSG00000164077|Q86VX9-2|MON1A nc|ENSG00000164077|Q86VX9-2|MON1A MULTI-MSMS UPN47_class_I_Rep_2 3 588.304443359375 2 588.30279 1174.59103 0.42879 0.00025226 0.1705 0.00010031 0.59929 0.00035257 588.3028494374221 72.223 0.53033 75.513 75.405 75.935 3.2899 57 46 3 0 0 0 0.45688 1 17763 17763 4.756 0.42677 1 113230 1277 4076 796 797 1587 1587 0.01071476554648143 AQEVASVVSA 10 Unmodified _AQEVASVVSA_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS UPN47_class_I_Rep_3 4 480.7533874511719 2 480.753464 959.492375 -0.37548 -0.00018051 -0.24863 -0.00011953 -0.62411 -0.00030004 480.75342466369 40.308 0.80827 43.545 43.244 44.053 3.2372 115 51 3 0 0 0 0.54148 1 8145 8145 6.6304 0.89852 1 243410 1278 1375 797 798 1588 1588 0.011008733096218748 AQFAHSYEFY 10 Unmodified _AQFAHSYEFY_ 0 0 0 REV__ENSG00000113318|ENST00000265081|MSH3 REV__ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN47_class_I_Rep_1 2 421.85382080078125 3 421.520739 1261.54039 -0.47307 -0.00019941 -0.99681 -0.00042018 -1.4699 -0.00061958 421.52046678907516 25.811 0.1362 29.573 29.509 29.645 3.7624 18 13 2 0 0 0 0.56309 1 3602 3602 0.69767 0 1 38830 + 1279 18502 798 799 1589 1589 -0.0799205277035071 AQFAHSYEFY 10 Unmodified _AQFAHSYEFY_ 0 0 0 REV__ENSG00000113318|ENST00000265081|MSH3 REV__ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN47_class_I_Rep_2 3 421.5203857421875 3 421.520739 1261.54039 -0.93978 -0.00039614 -0.093546 -3.9432E-05 -1.0333 -0.00043557 421.5207543648089 24.606 1.7987 28.089 27.711 29.51 3.483 360 166 4 0 0 0 0.40227 7 3277 3205;3241;3277;3317;3354;3395;3496 16.566 7.8205 1 385310 + 1280 18502 798 799 1590;1591;1592;1593;1594;1595;1596 1592 -0.0799205277035071 AQFYRSPVPF 10 Unmodified _AQFYRSPVPF_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|38|3|anti-sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|38|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.3136596679688 2 606.314023 1210.61349 0.49893 0.00030251 -0.43147 -0.00026161 0.067456 4.0899E-05 606.3138219795661 56.4 0.61861 59.901 59.516 60.135 3.5014 89 49 2 0 0 0 0.56033 1 12044 12044 3.5965 0.31518 1 158360 + 1281 28744 799 800 1597 1597 0.016611207429377828 AQFYRSPVPF 10 Unmodified _AQFYRSPVPF_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|38|3|anti-sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|38|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.3141479492188 2 606.314023 1210.61349 0.60348 0.0003659 -0.15581 -9.4467E-05 0.44768 0.00027143 606.3139289146931 56.284 0.60762 59.817 59.489 60.097 3.5333 89 50 2 0 0 0 0.54078 3 12003 12003;12046;12073 6.7232 3.4419 1 166510 + 1282 28744 799 800 1598;1599;1600 1598 0.016611207429377828 AQHMHTVYQ 9 Unmodified _AQHMHTVYQ_ 0 0 0 REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|26|3|sense REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 557.7603759765625 2 557.758558 1113.50256 NaN NaN NaN NaN NaN NaN NaN 57.692 1 60.983 60.483 61.483 3.2912 0 0 0 0.38784 1 13302 13302 3.5965 0 1 + 1283 24238 800 801 1601 1601 -0.049648422367909006 AQIELSFVQS 10 Unmodified _AQIELSFVQS_ 0 0 0 REV__ENSG00000103540|ENST00000694978|CCP110 REV__ENSG00000103540|ENST00000694978|CCP110 MSMS UPN46_class_I_Rep_3 1 561.2199096679688 2 561.295496 1120.57644 NaN NaN NaN NaN NaN NaN NaN 47.3 1 47.3 46.8 47.8 0 0 0 0 0.53105 1 9769 9769 2.4985 0.19575 1 + 1284 18232 801 802 1602 1602 0.02097404406526948 AQIQAQIGAL 10 Unmodified _AQIQAQIGAL_ 0 0 0 ENSG00000204897|ENST00000312150|KRT25;CON__Q7Z3Z0;ENSG00000171446|ENST00000301656|KRT27;CON__Q7Z3Y8;ENSG00000173908|ENST00000306658|KRT28;CON__Q148H6;CON__Q7Z3Y7 ENSG00000204897|ENST00000312150|KRT25 ENSG00000204897|ENST00000312150|KRT25 MSMS UPN48_class_I_Rep_1 5 506.79132080078125 2 506.792924 1011.57129 NaN NaN NaN NaN NaN NaN NaN 76.147 1 79.647 79.147 80.147 3.4996 0 0 0 0.53105 1 18079 18079 6.7232 0.99131 1 + 1285 644 802 803 1603 1603 0.06597145334569632 AQISVALFLHL 11 Unmodified _AQISVALFLHL_ 0 0 0 nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2 nc|ENSG00000081177|Q9NVH0-2|EXD2 nc|ENSG00000081177|Q9NVH0-2|EXD2 MULTI-MSMS UPN46_class_I_Rep_3 1 606.8631591796875 2 606.360973 1210.70739 0.48142 0.00029192 0.16505 0.00010008 0.64648 0.000392 606.3610059704984 36.151 0.11235 36.151 36.107 36.22 0 14 8 2 0 0 0 0.65559 1 6683 6683 2.7352 1.0826 1 223330 1286 1213 803 804 1604 1604 0.11046839845243994 AQKGKRLF 8 Unmodified _AQKGKRLF_ 0 0 0 MER51-int_dup529|chr19:58255478-58256232:-|3.4462155406418464|0.4423244256814547|2.96|151.0|12|2|sense MER51-int_dup529|chr19:58255478-58256232:-|3.4462155406418464|0.4423244256814547|2.96|151.0|12|2|sense MER51-int_dup529|chr19:58255478-58256232:-|3.4462155406418464|0.4423244256814547|2.96|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 474.2926330566406 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 45.663 1 49.421 48.921 49.921 3.7579 0 0 0 0.39624 1 8838 8838 9.3474 0 1 1287 16081 804 805 1605 1605 0.09581190125209105 AQKKCGLWQN 10 Unmodified _AQKKCGLWQN_ 0 0 0 LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|54|1|anti-sense LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|54|1|anti-sense LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.30322265625 2 588.303133 1174.59171 0.45376 0.00026695 -0.61526 -0.00036196 -0.1615 -9.5011E-05 588.3027531825296 72.229 0.69077 75.448 75.192 75.883 3.2188 80 59 3 0 0 0 0.56333 1 17890 17890 1.4819 0.15237 1 98181 1288 15659 805 806 1606 1606 0.011399927227330409 AQKLLEQY 8 Unmodified _AQKLLEQY_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN46_class_I_Rep_3 1 496.7741394042969 2 496.7742 991.533846 0.29239 0.00014525 0.21264 0.00010563 0.50502 0.00025088 496.77428114309674 41.144 0.78372 41.144 40.807 41.591 0 150 78 3 0 0 0 0.82752 5 7998 7979;7998;8030;8069;8074 89.401 20.296 1 489720 1289 3641 806 807 1607;1608;1609;1610;1611 1608 0.037740540689469526 AQKLSLTIVF 10 Unmodified _AQKLSLTIVF_ 0 0 0 REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|36|2|anti-sense REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|36|2|anti-sense MSMS UPN47_class_I_Rep_3 4 560.3419799804688 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 95.026 1 98.436 97.936 98.936 3.4095 0 0 0 0.53105 1 23632 23632 1.3295 0 1 + 1290 32756 807 808 1612 1612 0.11535748579603933 AQKLSLTIVF 10 Unmodified _AQKLSLTIVF_ 0 0 0 REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|36|2|anti-sense REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 560.3403930664062 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 94.711 1 98.487 97.987 98.987 3.7761 0 0 0 0.53105 1 22515 22515 1.3295 0 1 + 1291 32756 807 808 1613 1613 0.11535748579603933 AQKLSLTIVF 10 Unmodified _AQKLSLTIVF_ 0 0 0 REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|36|2|anti-sense REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_3 7 560.340087890625 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 94.744 1 98.646 98.146 99.146 3.9016 0 0 0 0.53105 1 22454 22454 1.3295 0 1 + 1292 32756 807 808 1614 1614 0.11535748579603933 AQKYNQRRKHE 11 Unmodified _AQKYNQRRKHE_ 0 0 0 ENST00000302759.10_1_2:111425105-111425144:-|nuORF;ENST00000468927.1_1_2:111423713-111425408:-|nuORF;ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1 ENST00000302759.10_1_2:111425105-111425144:-|nuORF ENST00000302759.10_1_2:111425105-111425144:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 486.2874450683594 3 486.595524 1456.76474 0.07081 3.4456E-05 1.2036 0.00058566 1.2744 0.00062012 486.93045143807586 46.361 0.058353 49.712 49.666 49.724 3.3515 6 3 2 0 0 0 22.551 1 9846 9846 0.92553 0.22787 1 33868 1293 4430 808 809 1615 1615 0.054630751034892455 AQKYNQRRKHE 11 Unmodified _AQKYNQRRKHE_ 0 0 0 ENST00000302759.10_1_2:111425105-111425144:-|nuORF;ENST00000468927.1_1_2:111423713-111425408:-|nuORF;ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1 ENST00000302759.10_1_2:111425105-111425144:-|nuORF ENST00000302759.10_1_2:111425105-111425144:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 486.595524 1456.76474 -0.12476 -6.0705E-05 1.7323 0.00084292 1.6075 0.00078221 486.596407372961 45.798 0.44407 49.498 49.229 49.673 3.6999 -0.064367 0.00025723 NaN 0.92553 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 61071 1294 4430 808 809 0.054630751034892455 AQKYNQRRKHE 11 Unmodified _AQKYNQRRKHE_ 0 0 0 ENST00000302759.10_1_2:111425105-111425144:-|nuORF;ENST00000468927.1_1_2:111423713-111425408:-|nuORF;ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1 ENST00000302759.10_1_2:111425105-111425144:-|nuORF ENST00000302759.10_1_2:111425105-111425144:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 486.595524 1456.76474 -0.0045926 -2.2348E-06 1.3872 0.000675 1.3826 0.00067277 486.59614048390176 46.232 0.43765 49.476 49.263 49.7 3.244 -0.085958 -0.00024651 NaN 0.92553 37 28 2 NaN NaN NaN NaN 0 NaN NaN 0 65218 1295 4430 808 809 0.054630751034892455 AQLHKQKATIK 11 Unmodified _AQLHKQKATIK_ 0 0 0 REV__ENSG00000225830|ENST00000355832|ERCC6 REV__ENSG00000225830|ENST00000355832|ERCC6 MSMS UPN48_class_I_Rep_1 5 633.3870849609375 2 633.388054 1264.76155 NaN NaN NaN NaN NaN NaN NaN 84.835 1 88.432 87.932 88.932 3.5973 0 0 0 0.38417 1 20304 20304 4.5289 0.93237 1 + 1296 21291 809 810 1616 1616 0.13976431996798055 AQLLAQKL 8 Unmodified _AQLLAQKL_ 0 0 0 REV__HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|76|2|sense REV__HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|76|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 442.7816467285156 2 442.781828 883.549102 -0.2877 -0.00012739 0.98178 0.00043471 0.69408 0.00030733 442.78212164371644 43.3 0.56426 46.988 46.754 47.318 3.6875 48 31 2 0 0 0 0.82752 1 8871 8871 12.532 0 1 87152 + 1297 23611 810 811 1617 1617 0.10266965656808225 AQLLAQKL 8 Unmodified _AQLLAQKL_ 0 0 0 REV__HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|76|2|sense REV__HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|76|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 442.7817077636719 2 442.781828 883.549102 -0.60548 -0.00026809 1.1901 0.00052697 0.58466 0.00025888 442.7821357290108 43.844 0.53882 47.086 46.85 47.389 3.2419 46 32 2 0 0 0 0.82752 1 9147 9147 4.756 0 1 84534 + 1298 23611 810 811 1618 1618 0.10266965656808225 AQLLAQKL 8 Unmodified _AQLLAQKL_ 0 0 0 REV__HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|76|2|sense REV__HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|76|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 442.781828 883.549102 -0.55123 -0.00024407 1.0197 0.00045151 0.46847 0.00020743 442.7821136800456 43.706 0.61484 47.064 46.794 47.408 3.358 0.018002 -2.6245E-05 NaN 12.532 48 32 3 NaN NaN NaN NaN 0 NaN NaN 0 79528 + 1299 23611 810 811 0.10266965656808225 AQLLRASYR 9 Unmodified _AQLLRASYR_ 0 0 0 REV__ENST00000491376.5_1_7:128049423-128049973:-|nuORF REV__ENST00000491376.5_1_7:128049423-128049973:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 539.31201171875 2 539.311815 1076.60908 0.10913 5.8854E-05 -0.038 -2.0494E-05 0.071128 3.836E-05 539.3117402693862 30.349 1.316 30.349 29.985 31.301 0 196 105 2 0 0 0 0.49026 1 4832 4832 1.6526 0 1 701240 + 1300 18325 811 812 1619 1619 0.07383656320030241 AQLLWFMYW 9 Unmodified _AQLLWFMYW_ 0 0 0 REV__nc|ENSG00000179520|Q8NDX2-2|SLC17A8 REV__nc|ENSG00000179520|Q8NDX2-2|SLC17A8 MSMS UPN47_class_I_Rep_2 3 629.3075561523438 2 629.309895 1256.60524 NaN NaN NaN NaN NaN NaN NaN 52.509 1 55.842 55.342 56.342 3.3332 0 0 0 0.39428 1 11716 11716 2.0598 0.21551 1 + 1301 20680 812 813 1620 1620 -0.012801494980294592 AQLNQPIAV 9 Unmodified _AQLNQPIAV_ 0 0 0 REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 477.2742919921875 2 477.274367 952.53418 0.095289 4.5479E-05 -0.22337 -0.00010661 -0.12808 -6.1129E-05 477.2741758888087 49.159 0.66709 52.505 52.189 52.856 3.3465 66 45 2 0 0 0 0.46869 1 10633 10633 3.9444 0.66309 1 144860 + 1302 22594 813 814 1621 1621 0.056014737887949195 AQLSKQSLYT 10 Unmodified _AQLSKQSLYT_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MULTI-MSMS UPN48_class_I_Rep_2 6 569.8090209960938 2 569.808771 1137.60299 0.50955 0.00029035 -0.71381 -0.00040673 -0.20425 -0.00011639 569.8084329704135 28.203 0.5633 31.834 31.626 32.189 3.6311 75 59 2 0 0 0 0.56155 1 3935 3935 2.7352 1.0826 1 109890 + 1303 20567 814 815 1622 1622 0.03969093297860127 AQLYYSKSH 9 Unmodified _AQLYYSKSH_ 0 0 0 REV__LTR33_dup2375|chr4:88035348-88035769:-|2.099369782591499|0.2746537728487723|2.93|151.0|16|1|anti-sense REV__LTR33_dup2375|chr4:88035348-88035769:-|2.099369782591499|0.2746537728487723|2.93|151.0|16|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 549.2750244140625 2 548.774731 1095.53491 -0.16336 -8.9648E-05 -3.5025 -0.0019221 -3.6659 -0.0020117 548.7729360563613 16.581 0.097443 16.581 16.508 16.605 0 13 10 2 0 0 0 0.49187 1 1168 1168 1.4819 0.41044 1 16299 + 1304 30899 815 816 1623 1623 -0.009037315621299058 AQMIVWGY 8 Unmodified _AQMIVWGY_ 0 0 0 REV__MER21C_dup4801|chr17:72871362-72872096:+|1.6538969017952727|0.0044941820049387|8.52|151.0|31|1|anti-sense REV__MER21C_dup4801|chr17:72871362-72872096:+|1.6538969017952727|0.0044941820049387|8.52|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 484.2388000488281 2 484.238938 966.463324 NaN NaN NaN NaN NaN NaN NaN 27.042 1 30.384 29.884 30.884 3.3422 0 0 0 0.40581 1 4049 4049 2.8892 0 1 + 1305 31244 816 817 1624 1624 -0.021249425203677674 AQPKGVLLY 9 Unmodified _AQPKGVLLY_ 0 0 0 ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 ENST00000581764.1_1_17:61907522-61908306:+|nuORF ENST00000581764.1_1_17:61907522-61908306:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 494.7950134277344 2 494.794935 987.575317 0.25472 0.00012603 -0.10524 -5.207E-05 0.14949 7.3965E-05 494.7949001294458 49.454 0.46105 49.454 49.135 49.596 0 79 52 2 0 0 0 0.18929 2 10336 10336;10382 21.747 9.2151 1 216860 1306 1293 817 818 1625;1626 1625 0.08103234828274708 AQPLGQAWLQ 10 Unmodified _AQPLGQAWLQ_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS UPN48_class_I_Rep_1 5 556.2979736328125 2 556.298373 1110.58219 0.64652 0.00035966 -0.098426 -5.4754E-05 0.5481 0.0003049 556.2980809462075 60.944 0.48283 64.417 64.215 64.698 3.4737 68 41 2 0 0 0 0.48573 2 13501 13501;13531 13.042 0 1 176050 1307 4239 818 819 1627;1628 1627 0.031325477088330445 AQPVEGHY 8 Unmodified _AQPVEGHY_ 0 0 0 REV__nc|ENSG00000179583|P33076-3|CIITA REV__nc|ENSG00000179583|P33076-3|CIITA MSMS UPN47_class_I_Rep_1 2 450.7121276855469 2 450.714142 899.413731 NaN NaN NaN NaN NaN NaN NaN 118.74 1 122.34 121.84 122.84 3.6036 0 0 0 0.40581 1 29477 29477 2.8892 0.58649 1 + 1308 20683 819 820 1629 1629 -0.03999934204807687 AQPVEGHY 8 Unmodified _AQPVEGHY_ 0 0 0 REV__nc|ENSG00000179583|P33076-3|CIITA REV__nc|ENSG00000179583|P33076-3|CIITA MSMS UPN48_class_I_Rep_3 7 450.71282958984375 2 450.714142 899.413731 NaN NaN NaN NaN NaN NaN NaN 117.03 1 120.66 120.16 121.16 3.6312 0 0 0 0.40581 1 27851 27851 2.8892 0.58649 1 + 1309 20683 819 820 1630 1630 -0.03999934204807687 AQQAFEEARRR 11 Unmodified _AQQAFEEARRR_ 0 0 0 CBFB-MYH11|3|fusion;CBFB-MYH11|4|fusion;nc|ENSG00000067955|Q13951|CBFB;ENSG00000067955|ENST00000412916|CBFB;CBFB-MYH11|1|fusion;CBFB-MYH11|2|fusion CBFB-MYH11|3|fusion CBFB-MYH11|3|fusion MULTI-MSMS UPN46_class_I_Rep_3 1 454.5719909667969 3 454.572608 1360.69599 -0.26242 -0.00011929 -0.36799 -0.00016728 -0.63041 -0.00028657 454.5723551746127 20.979 0.64431 20.979 20.721 21.366 0 108 70 3 0 0 0 0.67462 1 2247 2247 1.0136 0.55906 1 114510 1310 424 820 821 1631 1631 0.030074108037752012 AQQKNLEGY 9 Unmodified _AQQKNLEGY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MSMS UPN46_class_I_Rep_3 1 525.7635498046875 2 525.764363 1049.51417 NaN NaN NaN NaN NaN NaN NaN 26.66 1 26.66 26.16 27.16 0 0 0 0 0.32573 1 3845 3845 9.3831 1.473 1 1311 2391 821 822 1632 1632 -0.008603219417864238 AQQLQRMLDMK 11 Unmodified _AQQLQRMLDMK_ 0 0 0 ENSG00000131055|ENST00000376075|COX4I2 ENSG00000131055|ENST00000376075|COX4I2 ENSG00000131055|ENST00000376075|COX4I2 MULTI-MSMS UPN46_class_I_Rep_3 1 454.5719909667969 3 454.572452 1360.69553 -0.26242 -0.00011929 -0.024075 -1.0944E-05 -0.28649 -0.00013023 454.5723551746127 20.979 0.64431 20.979 20.721 21.366 0 108 70 3 0 0 0 0.66279 1 2288 2288 2.084 0 1 114510 1312 2698 822 823 1633 1633 0.029605317680534426 AQQQMKMTEN 10 Unmodified _AQQQMKMTEN_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1;MDN1|p.A5053Hfs*69|1|0.04|ENSG00000112159|chr6:89658236-89658236|G/-|frameshift_variant ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS UPN48_class_I_Rep_1 5 604.774658203125 2 604.773548 1207.53254 NaN NaN NaN NaN NaN NaN NaN 26.999 1 30.562 30.062 31.062 3.5629 0 0 0 0.53105 1 3407 3407 1.4819 0.41044 1 1313 2000 823 824 1634 1634 -0.06292271353754586 AQQVPAGTHSS 11 Unmodified _AQQVPAGTHSS_ 0 0 0 REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF MSMS UPN47_class_I_Rep_3 4 541.7642211914062 2 541.764894 1081.51524 NaN NaN NaN NaN NaN NaN NaN 29.722 1 33.045 32.545 33.545 3.3235 0 0 0 0.38417 1 4841 4841 1.1933 0.39971 1 + 1314 20464 824 825 1635 1635 -0.022261075728920332 AQRIDECCPP 10 Unmodified _AQRIDECCPP_ 0 0 0 REV__MLT1F_dup3535|chr16:29136109-29136605:+|1.742999445745983|0.0571755484809664|4.93|151.0|11|2|sense REV__MLT1F_dup3535|chr16:29136109-29136605:+|1.742999445745983|0.0571755484809664|4.93|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 566.2508544921875 2 566.249708 1130.48486 NaN NaN NaN NaN NaN NaN NaN 35.45 1 39.138 38.638 39.638 3.6877 0 0 0 0.53105 1 5843 5843 1.4819 0.28856 1 + 1315 31706 825 826 1636 1636 -0.07515925553957459 AQRNLYRKV 9 Unmodified _AQRNLYRKV_ 0 0 0 nc|ENSG00000173041|Q8NEM1-2|ZNF680;ENSG00000173041|ENST00000309683|ZNF680;ENST00000539211.6_1_19:56918456-56925471:+|nuORF;ENST00000436972.3_1_19:56918456-56925814:+|nuORF;ENSG00000198440|ENST00000333201|ZNF583 nc|ENSG00000173041|Q8NEM1-2|ZNF680 nc|ENSG00000173041|Q8NEM1-2|ZNF680 MSMS UPN48_class_I_Rep_1 5 574.3383178710938 2 574.338364 1146.66217 NaN NaN NaN NaN NaN NaN NaN 111.36 1 114.99 114.49 115.49 3.6326 0 0 0 0.4007 1 27016 27016 0.52476 0 1 1316 4606 826 827 1637 1637 0.09471034102671183 AQRPWQQPH 9 Unmodified _AQRPWQQPH_ 0 0 0 REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|10|1|sense REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.292724609375 2 574.291414 1146.56827 0.42548 0.00024435 3.3826 0.0019426 3.8081 0.002187 574.7950488182953 40.666 0.052383 44.172 44.133 44.186 3.506 6 5 2 0 0 0 0.48846 1 7323 7323 1.8442 0.51471 1 56759 + 1317 30388 827 828 1638 1638 0.0008531500041044637 AQRQLKKA 8 Unmodified _AQRQLKKA_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS UPN47_class_I_Rep_3 4 471.79473876953125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 30.811 1 34.122 33.622 34.622 3.3116 0 0 0 0.40625 1 5168 5168 2.3027 0 1 + 1318 18606 828 829 1639 1639 0.1039228863688777 AQRRFLLS 8 Unmodified _AQRRFLLS_ 0 0 0 REV__L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|2|1|sense REV__L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 495.7961120605469 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.377 1 78.689 78.189 79.189 3.3127 0 0 0 0.40625 1 18609 18609 2.3027 0 1 + 1319 24314 829 830 1640 1640 0.08184288636891779 AQRRLPQL 8 Unmodified _AQRRLPQL_ 0 0 0 REV__ENSG00000007384|ENST00000262316|RHBDF1 REV__ENSG00000007384|ENST00000262316|RHBDF1 MSMS UPN47_class_I_Rep_1 2 491.3033142089844 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 81.047 1 84.535 84.035 85.035 3.4874 0 0 0 0.39996 1 20211 20211 7.9102 0 1 + 1320 17547 830 831 1641 1641 0.09687691011185962 AQRRLPQL 8 Unmodified _AQRRLPQL_ 0 0 0 REV__ENSG00000007384|ENST00000262316|RHBDF1 REV__ENSG00000007384|ENST00000262316|RHBDF1 MSMS UPN47_class_I_Rep_2 3 491.3021240234375 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 81.07 1 84.454 83.954 84.954 3.3839 0 0 0 0.39996 1 20189 20189 7.9102 0 1 + 1321 17547 830 831 1642 1642 0.09687691011185962 AQRRLPQL 8 Unmodified _AQRRLPQL_ 0 0 0 REV__ENSG00000007384|ENST00000262316|RHBDF1 REV__ENSG00000007384|ENST00000262316|RHBDF1 MSMS UPN47_class_I_Rep_2 3 491.30322265625 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 81.218 1 84.602 84.102 85.102 3.3839 0 0 0 0.39996 1 20225 20225 7.9102 0 1 + 1322 17547 830 831 1643 1643 0.09687691011185962 AQRWEGGWE 9 Unmodified _AQRWEGGWE_ 0 0 0 LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|9|3|sense LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|9|3|sense LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 559.7546997070312 2 559.75433 1117.49411 NaN NaN NaN NaN NaN NaN NaN 31.182 1 34.911 34.411 35.411 3.7293 0 0 0 0.39518 1 5196 5196 1.8442 0 1 1323 15573 831 832 1644 1644 -0.05994072881753709 AQSAILPLF 9 Unmodified _AQSAILPLF_ 0 0 0 REV__MER104_dup589|chr4:139115649-139115820:+|1.3384238203869714|0.3162559791916118|2.08|151.0|3|1|sense REV__MER104_dup589|chr4:139115649-139115820:+|1.3384238203869714|0.3162559791916118|2.08|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 480.2799072265625 2 480.28166 958.548768 NaN NaN NaN NaN NaN NaN NaN 19.67 1 23.32 22.82 23.82 3.6497 0 0 0 0.39428 1 1545 1545 2.0598 0 1 + 1324 31070 832 833 1645 1645 0.06783545936946211 AQSIKCVR 8 Unmodified _AQSIKCVR_ 0 0 0 REV__LTR8_dup2997|chr17:39376863-39377493:+|1.344877453190437|0.0081384620613751|7.37|151.0|42|3|anti-sense REV__LTR8_dup2997|chr17:39376863-39377493:+|1.344877453190437|0.0081384620613751|7.37|151.0|42|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 452.2696228027344 2 452.755287 903.496021 -0.084528 -3.8271E-05 2.0058 0.00090814 1.9213 0.00086986 452.7570988343047 29.285 0.12327 29.285 29.194 29.318 0 24 10 3 0 0 0 0.72333 1 4611 4611 5.2307 0.47466 1 30903 + 1325 31019 833 834 1646 1646 0.04041264602483352 AQSTTALLGIY 11 Unmodified _AQSTTALLGIY_ 0 0 0 L1MD2_dup5756|chr9:130603814-130604235:+|1.1245222748245978|0.1249138714437382|3.17|151.0|8|3|sense L1MD2_dup5756|chr9:130603814-130604235:+|1.1245222748245978|0.1249138714437382|3.17|151.0|8|3|sense L1MD2_dup5756|chr9:130603814-130604235:+|1.1245222748245978|0.1249138714437382|3.17|151.0|8|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.3111572265625 2 569.311146 1136.60774 0.046097 2.6243E-05 0.58261 0.00033168 0.6287 0.00035793 569.3114146754417 32.431 0.68819 35.886 35.626 36.314 3.4547 110 49 3 0 0 0 0.56119 1 5689 5689 6.2058 1.4498 1 184290 1326 12009 834 835 1647 1647 0.04489977440630355 AQTFHPGLI 9 Unmodified _AQTFHPGLI_ 0 0 0 L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|128|3|sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|128|3|sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|128|3|sense MSMS UPN48_class_I_Rep_2 6 492.2695007324219 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 64.755 1 68.234 67.734 68.734 3.4792 0 0 0 0.32573 1 14666 14666 9.3831 1.473 1 1327 13719 835 836 1648 1648 0.03165491134382137 AQTKRTQQY 9 Unmodified _AQTKRTQQY_ 0 0 0 REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF REV__ENST00000470325.1_1_17:15231272-15234902:-|nuORF MSMS UPN47_class_I_Rep_2 3 562.2852172851562 2 562.296362 1122.57817 NaN NaN NaN NaN NaN NaN NaN 42.771 1 46.132 45.632 46.632 3.3611 0 0 0 0.26661 1 8756 8756 12.532 0 1 + 1328 18828 836 837 1649 1649 0.021784582151667564 AQTNIYKHQH 10 Unmodified _AQTNIYKHQH_ 0 0 0 L1MA2_dup6057|chr13:41212789-41214978:-|1.5699956107078594|0.0846561842616512|4.21|151.0|19|1|sense L1MA2_dup6057|chr13:41212789-41214978:-|1.5699956107078594|0.0846561842616512|4.21|151.0|19|1|sense L1MA2_dup6057|chr13:41212789-41214978:-|1.5699956107078594|0.0846561842616512|4.21|151.0|19|1|sense MSMS UPN48_class_I_Rep_3 7 620.3164672851562 2 620.315086 1238.61562 NaN NaN NaN NaN NaN NaN NaN 47.809 1 51.443 50.943 51.943 3.6339 0 0 0 0.53105 1 9421 9421 5.2969 0.96765 1 1329 9416 837 838 1650 1650 0.00585549480751979 AQTRLFRV 8 Unmodified _AQTRLFRV_ 0 0 0 REV__HERVH-int_dup5473|chr19:9639985-9641734:-|2.85134613833282|0.1806152403641362|3.98|151.0|68|1|anti-sense REV__HERVH-int_dup5473|chr19:9639985-9641734:-|2.85134613833282|0.1806152403641362|3.98|151.0|68|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.7963562011719 2 495.795801 989.577048 0.20775 0.000103 2.3964 0.0011881 2.6041 0.0012911 495.79600570471837 68.622 0.15645 71.891 71.823 71.98 3.2696 17 13 2 0 0 0 0.82752 1 16643 16643 2.0598 0 1 81101 + 1330 23691 838 839 1651 1651 0.08184288636903148 AQTRLFRV 8 Unmodified _AQTRLFRV_ 0 0 0 REV__HERVH-int_dup5473|chr19:9639985-9641734:-|2.85134613833282|0.1806152403641362|3.98|151.0|68|1|anti-sense REV__HERVH-int_dup5473|chr19:9639985-9641734:-|2.85134613833282|0.1806152403641362|3.98|151.0|68|1|anti-sense MSMS UPN47_class_I_Rep_3 4 495.7963562011719 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 69.03 1 72.235 71.735 72.735 3.2044 0 0 0 0.40643 1 16809 16809 2.0598 0 1 + 1331 23691 838 839 1652 1652 0.08184288636903148 AQTTYDGLE 9 Unmodified _AQTTYDGLE_ 0 0 0 REV__ENSG00000122482.21,ZNF644,chr1,-,I8.1,90935529,90937484|32|6.89|2|intron REV__ENSG00000122482.21,ZNF644,chr1,-,I8.1,90935529,90937484|32|6.89|2|intron MSMS UPN47_class_I_Rep_2 3 499.22735595703125 2 499.227279 996.440005 NaN NaN NaN NaN NaN NaN NaN 19.791 1 23.188 22.688 23.688 3.3963 0 0 0 0.39518 1 1934 1934 1.8442 0.19162 1 + 1332 18749 839 840 1653 1653 -0.0583570982398669 AQVHFYQR 8 Unmodified _AQVHFYQR_ 0 0 0 REV__Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|15|1|anti-sense REV__Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.248779296875 2 524.769783 1047.52501 NaN NaN NaN NaN NaN NaN NaN 34.424 1 37.688 37.188 38.188 3.2639 0 0 0 0.40604 1 6258 6258 2.5775 0.27475 1 + 1333 17398 840 841 1654 1654 0.0031512522314187663 AQWHLSGSIL 10 Unmodified _AQWHLSGSIL_ 0 0 0 nc|ENSG00000105967|O14948-3|TFEC;nc|ENSG00000105967|O14948-2|TFEC nc|ENSG00000105967|O14948-3|TFEC nc|ENSG00000105967|O14948-3|TFEC MULTI-MSMS UPN47_class_I_Rep_1 2 556.2977905273438 2 556.298373 1110.58219 0.42519 0.00023653 0.069842 3.8853E-05 0.49503 0.00027539 556.2981474248024 60.785 0.29491 64.167 63.986 64.281 3.3815 31 27 2 0 0 0 0.53004 1 14172 14172 8.1555 0.24537 1 110490 1334 16654 841 842 1655 1655 0.03132547708855782 AQYEHDLEV 9 Unmodified _AQYEHDLEV_ 0 0 0 ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000413691.2_1_4:174554896-174555010:-|nuORF ENST00000413691.2_1_4:174554896-174555010:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 552.253662109375 2 552.253828 1102.4931 -0.0032838 -1.8135E-06 -0.47003 -0.00025958 -0.47332 -0.00026139 552.2538861362603 38.63 0.64134 42.295 42.034 42.675 3.6652 85 43 3 0 0 0 0.30034 1 7468 7468 13.906 0.39817 1 153020 1335 2745 842 843 1656 1656 -0.05404332041325688 AQYEHDLEV 9 Unmodified _AQYEHDLEV_ 0 0 0 ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN ENST00000413691.2_1_4:174554896-174555010:-|nuORF ENST00000413691.2_1_4:174554896-174555010:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 552.25439453125 2 552.253828 1102.4931 -0.0534 -2.9491E-05 -0.091252 -5.0394E-05 -0.14465 -7.9885E-05 552.254060772212 38.993 0.78327 42.231 42.016 42.799 3.238 86 54 2 0 0 0 0.38714 1 7657 7657 8.7454 2.5396 1 143240 1336 2745 842 843 1657 1657 -0.05404332041325688 AQYFHPFSMI 10 Unmodified _AQYFHPFSMI_ 0 0 0 REV__nc|ENSG00000138760|Q14108-2|SCARB2 REV__nc|ENSG00000138760|Q14108-2|SCARB2 MSMS UPN47_class_I_Rep_3 4 620.794921875 2 620.794609 1239.57467 NaN NaN NaN NaN NaN NaN NaN 46.308 1 49.552 49.052 50.052 3.2439 0 0 0 0.53105 1 9895 9895 1.4819 0 1 + 1337 19291 843 844 1658 1658 -0.03553927883081087 AQYQIFET 8 Unmodified _AQYQIFET_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS UPN48_class_I_Rep_1 5 500.24285888671875 2 500.242732 998.470912 0.29376 0.00014695 -0.10925 -5.4653E-05 0.18451 9.2298E-05 500.2425577923204 65.211 0.50851 68.665 68.418 68.927 3.4541 48 36 2 0 0 0 0.82752 1 14871 14871 13.508 0.97634 1 132270 + 1338 17927 844 845 1659 1659 -0.02838511719107828 AQYVFFSPLE 10 Unmodified _AQYVFFSPLE_ 0 0 0 REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|234|1|anti-sense REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|234|1|anti-sense MSMS UPN47_class_I_Rep_1 2 600.7998657226562 2 600.800414 1199.58628 NaN NaN NaN NaN NaN NaN NaN 45.576 1 49.276 48.776 49.776 3.6999 0 0 0 0.53105 1 9586 9586 1.4819 0 1 + 1339 29898 845 846 1660 1660 -0.005534075881087119 ARAVRVDVRLP 11 Unmodified _ARAVRVDVRLP_ 0 0 0 ENSG00000099999|ENST00000382363|RNF215 ENSG00000099999|ENST00000382363|RNF215 ENSG00000099999|ENST00000382363|RNF215 MSMS UPN47_class_I_Rep_2 3 626.392333984375 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 106.09 1 109.63 109.13 110.13 3.5345 0 0 0 0.38417 1 25708 25708 2.4985 0.84587 1 1340 1461 846 847 1661 1661 0.14178967573889167 ARCCSCCAS 9 Unmodified _ARCCSCCAS_ 0 0 0 ENST00000368005.5_2_1:161093718-161094104:-|nuORF ENST00000368005.5_2_1:161093718-161094104:-|nuORF ENST00000368005.5_2_1:161093718-161094104:-|nuORF MSMS UPN47_class_I_Rep_2 3 452.2657775878906 2 452.150625 902.286698 NaN NaN NaN NaN NaN NaN NaN 19.02 1 22.41 21.91 22.91 3.3898 0 0 0 0.4007 1 1712 1712 0.52476 0.52476 1 1341 6359 847 848 1662 1662 -0.16835386008972364 ARCQEPGVKGQ 11 Unmodified _ARCQEPGVKGQ_ 0 0 0 MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|59|2|anti-sense MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|59|2|anti-sense MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|59|2|anti-sense MSMS UPN46_class_I_Rep_3 1 586.798095703125 2 586.795672 1171.57679 NaN NaN NaN NaN NaN NaN NaN 53.88 1 53.88 53.38 54.38 0 0 0 0 0.38417 1 11626 11626 1.0715 0.46996 1 1342 15897 848 849 1663 1663 -0.002134991452749091 ARDRCFFL 8 Unmodified _ARDRCFFL_ 0 0 0 REV__AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|10|2|anti-sense REV__AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|10|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.2606201171875 2 514.260736 1026.50692 0.29119 0.00014975 -0.28927 -0.00014876 0.0019194 9.871E-07 514.260590296418 74.948 0.58072 78.194 78.043 78.624 3.2464 96 58 2 0 0 0 0.82752 1 18539 18539 5.2307 0 1 103300 + 1343 16991 849 850 1664 1664 -0.005273330232284934 ARDYLILKG 9 Unmodified _ARDYLILKG_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS UPN47_class_I_Rep_2 3 524.8111572265625 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 38.796 1 42.174 41.674 42.674 3.3785 0 0 0 0.38784 1 7550 7550 3.5965 0 1 1344 3056 850 851 1665 1665 0.08578022231290561 ARFKIDLCVL 10 Unmodified _ARFKIDLCVL_ 0 0 0 REV__L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|295|2|anti-sense REV__L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|295|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.34326171875 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 82.862 1 86.26 85.76 86.76 3.3984 0 0 0 0.53105 1 20653 20653 1.4819 0 1 + 1345 30149 851 852 1666 1666 0.08763210939059718 ARFRSHFWC 9 Unmodified _ARFRSHFWC_ 0 0 0 REV__ENST00000569748.5_2_16:71841975-71842765:-|nuORF REV__ENST00000569748.5_2_16:71841975-71842765:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 605.2916259765625 2 605.290359 1208.56617 -0.076168 -4.6104E-05 1.0264 0.00062125 0.95019 0.00057514 605.2909936553788 19.918 0.34306 23.53 23.382 23.725 3.6118 48 39 2 0 0 0 0.50015 1 1912 1912 0.6015 0 1 29842 + 1346 23081 852 853 1667 1667 -0.029774370090308366 ARFSSMIGTY 10 Unmodified _ARFSSMIGTY_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1-2|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1-2|PTCHD3 MULTI-MSMS UPN48_class_I_Rep_3 7 566.7763061523438 2 566.776416 1131.53828 0.36575 0.0002073 0.89093 0.00050496 1.2567 0.00071225 566.7768226817209 44.951 0.20416 48.588 48.53 48.734 3.6372 11 10 2 0 0 0 0.56189 1 8554 8554 2.4985 0.19575 1 61825 + 1347 32076 853 854 1668 1668 -0.02222804779762555 ARFVRFVP 8 Unmodified _ARFVRFVP_ 0 0 0 nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5 nc|ENSG00000155052|Q8WYK1|CNTNAP5 nc|ENSG00000155052|Q8WYK1|CNTNAP5 MULTI-MSMS UPN46_class_I_Rep_3 1 496.295654296875 2 496.295436 990.57632 0.21636 0.00010738 0.14337 7.1153E-05 0.35973 0.00017853 496.29554262923074 37.71 0.0317 37.71 37.697 37.728 0 4 2 2 0 0 0 0.82752 1 7121 7121 2.5775 0 1 855900 1348 3690 854 855 1669 1669 0.08065493987851369 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 518.30810546875 2 518.308544 1034.60253 0.32583 0.00016888 0.24337 0.00012614 0.5692 0.00029502 518.3083907321917 108.91 0.6808 108.91 108.69 109.37 0 125 50 3 0 0 0 0.40174 3 26661 26661;26711;26755 7.9102 7.9102 1 62329000 + 1349 24577 855 856 1670;1671;1672 1670 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 518.30859375 2 518.308544 1034.60253 0.32587 0.0001689 0.25634 0.00013287 0.58222 0.00030177 518.3084519258992 109.46 0.29194 109.46 109.35 109.64 0 78 24 4 0 0 0 0.33654 2 26909 26859;26909 11.64 7.9102 1 15169000 + 1350 24577 855 856 1673;1674 1674 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 518.3087158203125 2 518.308544 1034.60253 0.3259 0.00016891 0.4259 0.00022075 0.7518 0.00038966 518.308495003204 109.7 0.53139 109.7 109.58 110.11 0 129 43 5 0 0 0 0.33654 2 26997 26997;27042 11.64 11.64 1 15791000 + 1351 24577 855 856 1675;1676 1675 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 518.3086547851562 2 518.308544 1034.60253 0.32584 0.00016888 0.20864 0.00010814 0.53448 0.00027702 518.3084817079998 110.2 0.26474 110.2 110.11 110.38 0 92 24 5 0 0 0 0.40174 1 27134 27134 7.9102 3.1541 1 6242200 + 1352 24577 855 856 1677 1677 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 518.30859375 2 518.308544 1034.60253 0.25859 0.00013403 -0.062189 -3.2233E-05 0.1964 0.00010179 518.3084351400283 108.77 0.61136 112.3 112.08 112.7 3.5333 136 70 2 0 0 0 0.40174 2 26463 26463;26512 7.9102 7.9102 1 169000000 + 1353 24577 855 856 1678;1679 1678 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 518.3084106445312 2 518.308544 1034.60253 0.36013 0.00018666 -0.25156 -0.00013039 0.10857 5.6273E-05 518.3083383525754 108.76 0.66879 112.3 112.09 112.76 3.5382 143 77 2 0 0 0 0.40174 2 26631 26631;26782 7.9102 7.9102 1 165330000 + 1354 24577 855 856 1680;1681 1680 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 518.3085327148438 2 518.308544 1034.60253 0.36107 0.00018715 0.33886 0.00017563 0.69993 0.00036278 518.308437085678 109.28 1.2336 112.81 112.7 113.93 3.5347 411 177 3 0 0 0 0.40174 1 26928 26928 7.9102 7.9102 1 16846000 + 1355 24577 855 856 1682 1682 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 518.3084716796875 2 518.308544 1034.60253 0.25983 0.00013467 -0.45164 -0.00023409 -0.19181 -9.9416E-05 518.3082303648196 108.71 1.5444 112.34 112.19 113.73 3.6321 277 197 2 0 0 0 0.40174 2 26379 26379;26429 7.9102 7.9102 1 100350000 + 1356 24577 855 856 1683;1684 1683 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 518.3086547851562 2 518.308544 1034.60253 0.35851 0.00018582 0.58189 0.0003016 0.9404 0.00048742 518.3083265580332 108.73 1.6636 112.41 112.29 113.95 3.6746 457 209 4 0 0 0 0.40174 1 25862 25862 7.9102 7.9102 1 133200000 + 1357 24577 855 856 1685 1685 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MSMS UPN48_class_I_Rep_3 7 518.3086547851562 2 518.308544 1034.60253 NaN NaN NaN NaN NaN NaN NaN 108.96 1 112.63 112.13 113.13 3.6751 0 0 0 0.35339 1 25849 25849 7.9102 0 1 + 1358 24577 855 856 1686 1686 0.08661763159329894 ARFVVPIHP 9 Unmodified _ARFVVPIHP_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|76|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 518.308544 1034.60253 0.39988 0.00020726 0.29815 0.00015453 0.69803 0.0003618 518.3084206537294 109.04 1.4209 112.65 112.55 113.97 3.6046 0.24983 0.00048861 NaN 7.9102 350 177 3 NaN NaN NaN NaN 0 NaN NaN 0 21685000 + 1359 24577 855 856 0.08661763159329894 ARGAGAMPGLP 11 Unmodified _ARGAGAMPGLP_ 0 0 0 GPR179|p.G156Rfs*50|1|0.19|ENSG00000277399|chr17:38343324-38343325|-/T|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179 GPR179|p.G156Rfs*50|1|0.19|ENSG00000277399|chr17:38343324-38343325|-/T|frameshift_variant GPR179|p.G156Rfs*50|1|0.19|ENSG00000277399|chr17:38343324-38343325|-/T|frameshift_variant MULTI-SECPEP UPN46_class_I_Rep_3 1 499.27423095703125 2 499.266019 996.517485 0.23676 0.00011821 1.3975 0.00069773 1.6343 0.00081594 499.26816661307424 53.669 0.029839 53.669 53.649 53.679 0 4 2 2 0 0 0 22.551 1 11559 11559 1.3295 0.5359 1 44538 1360 5832 856 857 1687 1687 0.019086496312070267 ARGPKKHL 8 Unmodified _ARGPKKHL_ 0 0 0 ENSG00000198034|ENST00000316084|RPS4X;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2 ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2 ENSG00000198034|ENST00000316084|RPS4X MULTI-MSMS UPN47_class_I_Rep_3 4 453.7845764160156 2 453.785236 905.555919 -1.085 -0.00049237 -0.068122 -3.0913E-05 -1.1532 -0.00052328 453.7850828465487 12.885 1.0644 16.258 16.144 17.208 3.3734 229 122 4 0 0 0 0.82752 1 190 190 23.148 9.6405 1 488740 1361 5403;5846 857 858 1688 1688 0.09936323328042818 ARHHLLINLKT 11 Unmodified _ARHHLLINLKT_ 0 0 0 REV__L1MC1_dup10154|chr13:40995473-40996534:+|5.439615692944574|0.095685166384285|5.83|151.0|9|1|sense REV__L1MC1_dup10154|chr13:40995473-40996534:+|5.439615692944574|0.095685166384285|5.83|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 439.27783203125 3 439.270089 1314.78844 NaN NaN NaN NaN NaN NaN NaN 107.63 1 111.26 110.76 111.76 3.6313 0 0 0 0.38417 1 25949 25949 2.8433 0.4085 1 + 1362 26488 858 859 1689 1689 0.14363540607951109 ARHIPAIVP 9 Unmodified _ARHIPAIVP_ 0 0 0 L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|19|1|anti-sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|19|1|anti-sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_3 4 487.3001403808594 2 487.300719 972.586885 NaN NaN NaN NaN NaN NaN NaN 61.851 1 65.018 64.518 65.518 3.1667 0 0 0 0.36505 1 14621 14621 7.2892 2.0586 1 1363 9875 859 860 1690 1690 0.099494766422481 ARIIQLTKKE 10 Unmodified _ARIIQLTKKE_ 0 0 0 REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|64|3|sense REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|64|3|sense MSMS UPN47_class_I_Rep_1 2 600.3746948242188 2 600.377155 1198.73976 NaN NaN NaN NaN NaN NaN NaN 85.222 1 88.813 88.313 89.313 3.5914 0 0 0 0.53105 1 21284 21284 1.4819 0.95714 1 + 1364 26999 860 861 1691 1691 0.14833627248231096 ARINLLVAI 9 Unmodified _ARINLLVAI_ 0 0 0 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 MSMS UPN47_class_I_Rep_1 2 491.823974609375 2 491.824027 981.633501 NaN NaN NaN NaN NaN NaN NaN 65.399 1 68.755 68.255 69.255 3.3557 0 0 0 0.36505 1 15597 15597 7.2892 0 1 1365 3445 861 862 1692 1692 0.1419491647357063 ARKEWRKG 8 Unmodified _ARKEWRKG_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|5|1|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|5|1|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.7990112304688 2 515.798875 1029.5832 0.23718 0.00012234 -1.4951 -0.00077117 -1.2579 -0.00064883 515.7979799399764 28.808 0.54074 32.551 32.314 32.854 3.7424 73 60 2 0 0 0 0.82752 1 3969 3969 7.9102 1.187 1 80220 1366 12142 862 863 1693 1693 0.06958806868419742 ARKFWNNR 8 Unmodified _ARKFWNNR_ 0 0 0 ENST00000379705.7_1_13:38213425-38225462:-|nuORF ENST00000379705.7_1_13:38213425-38225462:-|nuORF ENST00000379705.7_1_13:38213425-38225462:-|nuORF MSMS UPN46_class_I_Rep_3 1 546.3924560546875 2 546.296499 1090.57845 NaN NaN NaN NaN NaN NaN NaN 59.528 1 59.528 59.028 60.028 0 0 0 0 0.40625 1 13166 13166 2.3027 0.24298 1 1367 6481 863 864 1694 1694 0.036779227256374725 ARKGKWRK 8 Unmodified _ARKGKWRK_ 0 0 0 REV__MSTD_dup673|chr2:20682442-20682792:-|1.031697469340306|0.2992732533600566|1.79|151.0|25|3|anti-sense REV__MSTD_dup673|chr2:20682442-20682792:-|1.031697469340306|0.2992732533600566|1.79|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.3242797851562 2 515.32506 1028.63557 NaN NaN NaN NaN NaN NaN NaN 102.03 1 105.75 105.25 106.25 3.7252 0 0 0 0.40746 1 24182 24182 0.69038 0 1 + 1368 31920 864 865 1695 1695 0.12239390002014261 ARKRKEIIRTR 11 Unmodified _ARKRKEIIRTR_ 0 0 0 L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|77|3|sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|77|3|sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|77|3|sense MSMS UPN46_class_I_Rep_3 1 476.30609130859375 3 476.307426 1425.90045 NaN NaN NaN NaN NaN NaN NaN 72.839 1 72.839 72.339 73.339 0 0 0 0 0.38417 1 16856 16856 0.40827 0.26837 1 1369 11023 865 866 1696 1696 0.20453394684955128 ARKRSSSN 8 Unmodified _ARKRSSSN_ 0 0 0 REV__HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|67|2|sense REV__HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|67|2|sense MSMS UPN46_class_I_Rep_3 1 453.26776123046875 2 453.249215 904.483876 NaN NaN NaN NaN NaN NaN NaN 98.516 1 98.516 98.016 99.016 0 0 0 0 0.40753 1 23984 23984 0.6015 0.076735 1 + 1370 23945 866 867 1697 1697 0.02781364183670121 ARKVHRWW 8 Unmodified _ARKVHRWW_ 0 0 0 REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|23|3|sense REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 569.8235473632812 2 569.822684 1137.63082 NaN NaN NaN NaN NaN NaN NaN 54.681 1 57.866 57.366 58.366 3.1856 0 0 0 0.40604 1 12436 12436 2.5775 0.51773 1 + 1371 26856 867 868 1698 1698 0.06750505859258737 ARLDSSSSKF 10 Unmodified _ARLDSSSSKF_ 0 0 0 ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A ENSG00000214562|ENST00000381697|NUTM2D ENSG00000214562|ENST00000381697|NUTM2D MSMS UPN48_class_I_Rep_1 5 549.2852172851562 2 549.28292 1096.55129 NaN NaN NaN NaN NaN NaN NaN 39.44 1 42.945 42.445 43.445 3.5048 0 0 0 0.53105 1 6965 6965 10.151 1.4052 1 1372 5072 868 869 1699 1699 0.006873496039588645 ARLHILFLIII 11 Unmodified _ARLHILFLIII_ 0 0 0 REV__L1MC4_dup16729|chr11:72957460-72957955:+|2.171861210736112|0.0457047861229637|5.57|151.0|29|3|anti-sense REV__L1MC4_dup16729|chr11:72957460-72957955:+|2.171861210736112|0.0457047861229637|5.57|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 441.2974548339844 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 61.49 1 64.964 64.464 65.464 3.4738 0 0 0 0.38417 1 13663 13663 0.50596 0.34663 1 + 1373 26839 869 870 1700 1700 0.21696544455426192 ARLHLKKKKIS 11 Unmodified _ARLHLKKKKIS_ 0 0 0 AluSz_dup92603|chr19:7389520-7389783:-|1.4974506363669895|0.0402007376433719|5.22|151.0|7|2|sense AluSz_dup92603|chr19:7389520-7389783:-|1.4974506363669895|0.0402007376433719|5.22|151.0|7|2|sense AluSz_dup92603|chr19:7389520-7389783:-|1.4974506363669895|0.0402007376433719|5.22|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 85.33 1 89.079 88.579 89.579 3.7494 0 0 0 0.38417 1 20233 20233 0.40827 0.24894 1 1374 369 870 871 1701 1701 0.22417277055842533 ARLLRLYRR 9 Unmodified _ARLLRLYRR_ 0 0 0 ENSG00000179431|ENST00000317811|FJX1 ENSG00000179431|ENST00000317811|FJX1 ENSG00000179431|ENST00000317811|FJX1 MSMS UPN48_class_I_Rep_3 7 406.248779296875 3 406.263157 1215.76764 NaN NaN NaN NaN NaN NaN NaN 108.09 1 111.77 111.27 112.27 3.6813 0 0 0 0.40191 1 25540 25540 0.23584 0 1 1375 4861 871 872 1702 1702 0.1683899501895212 ARLPGLLC 8 Unmodified _ARLPGLLC_ 0 0 0 REV__L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|215|1|anti-sense REV__L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|215|1|anti-sense MSMS UPN48_class_I_Rep_3 7 421.7513122558594 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 80.925 1 84.588 84.088 85.088 3.6635 0 0 0 0.40364 1 19153 19153 5.7604 0 1 + 1376 29507 872 873 1703 1703 0.05731067579165483 ARNDYLLTL 9 Unmodified _ARNDYLLTL_ 0 0 0 nc|ENSG00000137478|O94868-3|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|2|intron;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|1|intron;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|5|intron;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|3|intron nc|ENSG00000137478|O94868-3|FCHSD2 nc|ENSG00000137478|O94868-3|FCHSD2 MULTI-MSMS UPN47_class_I_Rep_1 2 539.79833984375 2 539.798206 1077.58186 0.4176 0.00022542 0.41967 0.00022654 0.83728 0.00045196 539.7980746627876 58.882 0.88372 62.299 61.93 62.814 3.4171 107 60 3 0 0 0 0.12096 1 13622 13622 29.841 0.759 1 377690 1377 3027 873 874 1704 1704 0.0461712798901317 ARNDYLLTL 9 Unmodified _ARNDYLLTL_ 0 0 0 nc|ENSG00000137478|O94868-3|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|2|intron;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|1|intron;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|5|intron;ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|3|intron nc|ENSG00000137478|O94868-3|FCHSD2 nc|ENSG00000137478|O94868-3|FCHSD2 MULTI-MSMS UPN47_class_I_Rep_2 3 539.7974853515625 2 539.798206 1077.58186 0.468 0.00025263 0.46388 0.0002504 0.93188 0.00050303 539.7980375477222 59.239 0.82489 62.513 62.058 62.883 3.2742 100 55 4 0 0 0 0.11355 1 13749 13749 31.268 0 1 288650 1378 3027 873 874 1705 1705 0.0461712798901317 ARPDLAAR 8 Unmodified _ARPDLAAR_ 0 0 0 ENSG00000132518|ENST00000254854|GUCY2D ENSG00000132518|ENST00000254854|GUCY2D ENSG00000132518|ENST00000254854|GUCY2D MSMS UPN48_class_I_Rep_1 5 435.2513122558594 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 67.819 1 71.271 70.771 71.771 3.4517 0 0 0 0.40746 1 15617 15617 0.69038 0 1 1379 2761 874 875 1706 1706 0.04839453677357142 ARPEPAPRDSP 11 Unmodified _ARPEPAPRDSP_ 0 0 0 REV__ENST00000334512.9_1_10:81072492-81072669:+|nuORF REV__ENST00000334512.9_1_10:81072492-81072669:+|nuORF MSMS UPN46_class_I_Rep_3 1 596.8056030273438 2 596.807094 1191.59963 NaN NaN NaN NaN NaN NaN NaN 67.683 1 67.683 67.183 68.183 0 0 0 0 0.38417 1 15417 15417 2.2828 0.22302 1 + 1380 21790 875 876 1707 1707 0.011498432438429518 ARPLREGV 8 Unmodified _ARPLREGV_ 0 0 0 REV__nc|ENSG00000277399|Q6PRD1|GPR179 REV__nc|ENSG00000277399|Q6PRD1|GPR179 MULTI-MSMS UPN48_class_I_Rep_1 5 449.26654052734375 2 449.266876 896.519199 0.025651 1.1524E-05 -0.23134 -0.00010393 -0.20569 -9.2409E-05 449.26667238391667 81.227 0.82244 84.789 84.455 85.278 3.5624 164 98 3 0 0 0 0.82752 1 19406 19406 4.3292 0 1 204470 + 1381 21438 876 877 1708 1708 0.06680026711467235 ARPPAAESPRP 11 Unmodified _ARPPAAESPRP_ 0 0 0 ENST00000452079.5_2_1:3663585-3663774:-|nuORF ENST00000452079.5_2_1:3663585-3663774:-|nuORF ENST00000452079.5_2_1:3663585-3663774:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 574.81201171875 2 574.812179 1147.60981 0.22994 0.00013217 -0.13373 -7.6868E-05 0.096217 5.5307E-05 574.8120957012337 29.959 0.8632 29.959 29.641 30.504 0 160 71 3 0 0 0 0.66059 1 4950 4950 2.2828 0 1 252830 1382 6817 877 878 1709 1709 0.041904509690766645 ARPRLRRLD 9 Unmodified _ARPRLRRLD_ 0 0 0 REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF MSMS UPN47_class_I_Rep_2 3 576.8594360351562 2 576.857255 1151.69996 NaN NaN NaN NaN NaN NaN NaN 109.33 1 112.86 112.36 113.36 3.5307 0 0 0 0.38639 1 26625 26625 3.9444 0 1 + 1383 19047 878 879 1710 1710 0.1301754508817794 ARQAWRLIL 9 Unmodified _ARQAWRLIL_ 0 0 0 ENST00000320241.4_1_16:86614428-86614788:+|nuORF ENST00000320241.4_1_16:86614428-86614788:+|nuORF ENST00000320241.4_1_16:86614428-86614788:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 564.3578491210938 2 563.845825 1125.6771 0.51725 0.00029165 -1.2155 -0.00068535 -0.69825 -0.0003937 563.8450201477484 65.687 0.58554 69.169 68.949 69.535 3.4812 78 41 2 0 0 0 0.36392 1 14909 14909 10.074 0 1 162460 1384 6147 879 880 1711 1711 0.11928525970688497 ARQFIRWVR 9 Unmodified _ARQFIRWVR_ 0 0 0 REV__nc|ENSG00000160282|O95954-3|FTCD REV__nc|ENSG00000160282|O95954-3|FTCD MULTI-MSMS UPN48_class_I_Rep_1 5 411.57806396484375 3 411.243874 1230.70979 -0.14171 -5.8277E-05 -0.5793 -0.00023824 -0.72101 -0.00029651 411.2435943260125 91.379 0.53224 95.005 94.762 95.294 3.626 118 79 2 0 0 0 0.46085 1 22003 22003 4.5289 0.41224 1 5601300 + 1385 32029 880 881 1712 1712 0.1036673309354228 ARQKHSGKALV 11 Unmodified _ARQKHSGKALV_ 0 0 0 REV__LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|3|1|sense REV__LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 597.8560791015625 2 597.856921 1193.69929 0.53793 0.00032161 -0.94164 -0.00056297 -0.40371 -0.00024136 597.8559637468195 83.89 0.32783 87.301 87.181 87.509 3.4116 48 40 2 0 0 0 0.67398 1 20939 20939 1.0715 0.46996 1 58955 + 1386 31025 881 882 1713 1713 0.11018705648439209 ARRCTLPPL 9 Unmodified _ARRCTLPPL_ 0 0 0 ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|9|1|sense ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|9|1|sense ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 513.7981567382812 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 97.988 1 101.59 101.09 102.09 3.6065 0 0 0 0.39428 1 23635 23635 2.0598 0.21551 1 1387 7760 882 883 1714 1714 0.06865215419247761 ARRDLGLVPH 10 Unmodified _ARRDLGLVPH_ 0 0 0 ENST00000467438.1_1_1:87597663-87598596:+|nuORF;ENST00000589455.5_1_1:87597768-87599368:+|nuORF;ENST00000590653.5_1_1:87597675-87598400:+|nuORF;ENST00000484933.6_1_1:87597705-87598381:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.3292236328125 2 567.330539 1132.64652 0.46316 0.00026277 -1.2922 -0.00073308 -0.829 -0.00047032 567.3296377097146 99.037 0.13109 99.037 98.953 99.084 0 24 13 3 0 0 0 0.56033 1 24117 24117 3.5965 0.31518 1 445890 1388 6909 883 884 1715 1715 0.0855074758567298 ARRDLGLVPH 10 Unmodified _ARRDLGLVPH_ 0 0 0 ENST00000467438.1_1_1:87597663-87598596:+|nuORF;ENST00000589455.5_1_1:87597768-87599368:+|nuORF;ENST00000590653.5_1_1:87597675-87598400:+|nuORF;ENST00000484933.6_1_1:87597705-87598381:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 567.330539 1132.64652 0.46316 0.00026277 -1.2922 -0.00073308 -0.829 -0.00047032 567.3296377097146 99.037 0.13109 99.037 98.953 99.084 0 0.022728 2.4747E-05 NaN 3.5965 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 445890 1389 6909 883 884 0.0855074758567298 ARRDLGLVPH 10 Unmodified _ARRDLGLVPH_ 0 0 0 ENST00000467438.1_1_1:87597663-87598596:+|nuORF;ENST00000589455.5_1_1:87597768-87599368:+|nuORF;ENST00000590653.5_1_1:87597675-87598400:+|nuORF;ENST00000484933.6_1_1:87597705-87598381:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 567.330539 1132.64652 0.45088 0.0002558 -1.3171 -0.00074723 -0.86621 -0.00049143 567.3295353279461 95.09 0.66126 98.992 98.708 99.369 3.9016 -0.022728 -3.5464E-06 NaN 3.5965 213 88 3 NaN NaN NaN NaN 0 NaN NaN 0 428420 1390 6909 883 884 0.0855074758567298 ARRGVVPG 8 Unmodified _ARRGVVPG_ 0 0 0 ENST00000538906.5_2_16:31084355-31084742:-|nuORF ENST00000538906.5_2_16:31084355-31084742:-|nuORF ENST00000538906.5_2_16:31084355-31084742:-|nuORF MSMS UPN48_class_I_Rep_1 5 406.2486572265625 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 107.5 1 111.13 110.63 111.63 3.6299 0 0 0 0.39624 1 25911 25911 9.3474 0 1 1391 7344 884 885 1716 1716 0.06959774885558545 ARRNNLSY 8 Unmodified _ARRNNLSY_ 0 0 0 HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|95|1|anti-sense HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|95|1|anti-sense HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|95|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 496.71234130859375 2 497.264865 992.515176 0.16836 8.3719E-05 1.1852 0.00058934 1.3535 0.00067306 497.2660519593535 65.711 0.32961 68.966 68.83 69.16 3.2556 27 17 2 0 0 0 0.72333 1 15761 15761 7.9102 0.62092 1 40762 1392 8458 885 886 1717 1717 0.01861937217756804 ARRQRLQM 8 Unmodified _ARRQRLQM_ 0 0 0 ENST00000306279.3_1_2:85981061-85981124:+|nuORF ENST00000306279.3_1_2:85981061-85981124:+|nuORF ENST00000306279.3_1_2:85981061-85981124:+|nuORF MSMS UPN48_class_I_Rep_1 5 529.8035888671875 2 529.803634 1057.59272 NaN NaN NaN NaN NaN NaN NaN 67.359 1 70.811 70.311 71.311 3.4516 0 0 0 0.40604 1 15475 15475 2.5775 0 1 1393 6093 886 887 1718 1718 0.06622251882276942 ARRQWNDI 8 Unmodified _ARRQWNDI_ 0 0 0 L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|18|3|sense L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|18|3|sense L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 529.7781982421875 2 529.778139 1057.54173 NaN NaN NaN NaN NaN NaN NaN 32.399 1 35.686 35.186 36.186 3.2867 0 0 0 0.40625 1 5648 5648 2.3027 0 1 1394 9244 887 888 1719 1719 0.015256261090826229 ARRRIVLALER 11 Unmodified _ARRRIVLALER_ 0 0 0 REV__nc|ENSG00000070159|P26045-3|PTPN3 REV__nc|ENSG00000070159|P26045-3|PTPN3 MULTI-SECPEP UPN48_class_I_Rep_3 7 451.30279541015625 3 451.624755 1351.85244 0.089958 4.0627E-05 -0.70219 -0.00031713 -0.61224 -0.0002765 451.95871558738355 46.496 0.4062 50.133 49.978 50.384 3.6363 36 23 2 0 0 0 22.551 1 8991 8991 0.094841 0 1 111370 + 1395 17792 888 889 1720 1720 0.1905832076488423 ARRRRILV 8 Unmodified _ARRRRILV_ 0 0 0 REV__CON__P07224 REV__CON__P07224 MSMS UPN48_class_I_Rep_2 6 520.353271484375 2 520.351609 1038.68866 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.55 111.05 112.05 3.6783 0 0 0 0.40604 1 25535 25535 2.5775 0.51773 1 + + 1396 17478 889 890 1721 1721 0.17086767784689982 ARRRRSLPG 9 Unmodified _ARRRRSLPG_ 0 0 0 ENSG00000182810|ENST00000332395|DDX28 ENSG00000182810|ENST00000332395|DDX28 ENSG00000182810|ENST00000332395|DDX28 MSMS UPN47_class_I_Rep_3 4 534.8272094726562 2 534.828498 1067.64244 NaN NaN NaN NaN NaN NaN NaN 108.41 1 111.95 111.45 112.45 3.5382 0 0 0 0.38299 1 26534 26534 4.756 0 1 1397 4971 890 891 1722 1722 0.11132702882605372 ARRTSLVP 8 Unmodified _ARRTSLVP_ 0 0 0 REV__ENST00000559776.1_1_15:83208858-83208924:-|nuORF REV__ENST00000559776.1_1_15:83208858-83208924:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 450.2753601074219 2 450.274701 898.534849 0.0048188 2.1698E-06 1.1358 0.00051141 1.1406 0.00051358 450.2751970594975 107.5 0.11643 111.13 111.04 111.16 3.6299 21 16 2 0 0 0 0.82752 1 25904 25904 14.838 1.3304 1 1574700 + 1398 23011 891 892 1723 1723 0.08152313228515595 ARRVGHSNSM 10 Unmodified _ARRVGHSNSM_ 0 0 0 MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MSMS UPN47_class_I_Rep_1 2 557.7822265625 2 557.780356 1113.54616 NaN NaN NaN NaN NaN NaN NaN 46.733 1 50.429 49.929 50.929 3.6958 0 0 0 0.53105 1 9940 9940 7.1017 1.3699 1 1399 15891 892 893 1724 1724 -0.006072327396395849 ARRVGHSNSM 10 Unmodified _ARRVGHSNSM_ 0 0 0 MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.77978515625 2 557.780356 1113.54616 0.045603 2.5437E-05 -0.91887 -0.00051253 -0.87327 -0.00048709 557.7797425077306 36.668 0.71099 40.067 39.781 40.492 3.3988 70 52 2 0 0 0 0.53414 3 6974 6867;6913;6974 7.609 3.6646 1 95291 1400 15891 892 893 1725;1726;1727 1727 -0.006072327396395849 ARRVGHSNSM 10 Unmodified _ARRVGHSNSM_ 0 0 0 MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MSMS UPN47_class_I_Rep_2 3 557.7796630859375 2 557.780356 1113.54616 NaN NaN NaN NaN NaN NaN NaN 47.163 1 50.515 50.015 51.015 3.3515 0 0 0 0.53105 1 10101 10101 7.1017 1.3699 1 1401 15891 892 893 1728 1728 -0.006072327396395849 ARRVGHSNSM 10 Unmodified _ARRVGHSNSM_ 0 0 0 MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.7800903320312 2 557.780356 1113.54616 -0.083839 -4.6764E-05 -0.8873 -0.00049492 -0.97114 -0.00054168 557.7798686845542 36.891 0.60987 40.138 39.747 40.357 3.247 56 43 2 0 0 0 0.56155 2 6942 6942;6998 2.7352 2.7352 1 76956 1402 15891 892 893 1729;1730 1729 -0.006072327396395849 ARRVRGAGAR 10 Unmodified _ARRVRGAGAR_ 0 0 0 ENST00000275521.10_1_7:45960389-45960869:-|nuORF ENST00000275521.10_1_7:45960389-45960869:-|nuORF ENST00000275521.10_1_7:45960389-45960869:-|nuORF MSMS UPN47_class_I_Rep_2 3 535.3360595703125 2 535.326122 1068.63769 NaN NaN NaN NaN NaN NaN NaN 109.51 1 113.04 112.54 113.54 3.5307 0 0 0 0.53105 1 26681 26681 10.074 0.6908 1 1403 6021 893 894 1731 1731 0.10611818739835144 ARSCDPLDKRH 11 Unmodified _ARSCDPLDKRH_ 0 0 0 L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|288|2|anti-sense L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|288|2|anti-sense L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|288|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 432.88507080078125 3 433.219177 1296.6357 -0.43574 -0.00018877 0.039388 1.7063E-05 -0.39635 -0.00017171 433.2188765730894 64.198 0.62646 67.454 67.077 67.703 3.2556 121 50 3 0 0 0 22.551 1 15295 15295 1.0136 0 1 125750 1404 14871 894 895 1732 1732 -0.0007502285093323735 ARSKKKTPL 9 Unmodified _ARSKKKTPL_ 0 0 0 REV__L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|30|2|sense REV__L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.8320922851562 2 514.832383 1027.65021 -0.29841 -0.00015363 -0.11274 -5.8041E-05 -0.41115 -0.00021167 514.832227612761 13.683 0.31632 17.071 16.976 17.292 3.388 55 36 2 0 0 0 0.47197 1 414 414 3.5965 1.5367 1 61352 + 1405 30013 895 896 1733 1733 0.13749417359508698 ARSVPRLM 8 Unmodified _ARSVPRLM_ 0 0 0 REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1 REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1 MSMS UPN46_class_I_Rep_3 1 464.7955627441406 2 465.271104 928.527655 NaN NaN NaN NaN NaN NaN NaN 49.294 1 49.294 48.794 49.794 0 0 0 0 0.40643 1 10338 10338 2.0598 0 1 + 1406 17898 896 897 1734 1734 0.06053257356438735 ARTAYTSAQL 10 Unmodified _ARTAYTSAQL_ 0 0 0 nc|ENSG00000120093|P14651-3|HOXB3;nc|ENSG00000120093|P14651-2|HOXB3;ENSG00000120093|ENST00000498678|HOXB3;ENSG00000105997|ENST00000612286|HOXA3 nc|ENSG00000120093|P14651-3|HOXB3 nc|ENSG00000120093|P14651-3|HOXB3 MULTI-MSMS UPN47_class_I_Rep_2 3 541.2850341796875 2 541.285463 1080.55637 0.0064188 3.4744E-06 -0.56831 -0.00030762 -0.56189 -0.00030415 541.2850568587362 15.005 0.47776 18.391 18.254 18.731 3.3864 94 52 3 0 0 0 0.55448 1 725 725 4.897 0 1 101250 1407 1773 897 898 1735 1735 0.01931653466544958 ARTAYTSAQL 10 Unmodified _ARTAYTSAQL_ 0 0 0 nc|ENSG00000120093|P14651-3|HOXB3;nc|ENSG00000120093|P14651-2|HOXB3;ENSG00000120093|ENST00000498678|HOXB3;ENSG00000105997|ENST00000612286|HOXA3 nc|ENSG00000120093|P14651-3|HOXB3 nc|ENSG00000120093|P14651-3|HOXB3 MULTI-MSMS UPN47_class_I_Rep_3 4 541.284912109375 2 541.285463 1080.55637 -0.42919 -0.00023231 -0.21318 -0.00011539 -0.64237 -0.0003477 541.2852395157848 15.05 0.38012 18.416 18.289 18.67 3.3659 79 43 2 0 0 0 0.53794 1 722 722 7.1017 0 1 103590 1408 1773 897 898 1736 1736 0.01931653466544958 ARTAYTSAQL 10 Unmodified _ARTAYTSAQL_ 0 0 0 nc|ENSG00000120093|P14651-3|HOXB3;nc|ENSG00000120093|P14651-2|HOXB3;ENSG00000120093|ENST00000498678|HOXB3;ENSG00000105997|ENST00000612286|HOXA3 nc|ENSG00000120093|P14651-3|HOXB3 nc|ENSG00000120093|P14651-3|HOXB3 MULTI-MSMS UPN48_class_I_Rep_1 5 541.2852783203125 2 541.285463 1080.55637 0.52535 0.00028436 -0.90009 -0.0004872 -0.37474 -0.00020284 541.2848146536393 15.176 0.43154 18.694 18.552 18.984 3.5184 109 56 3 0 0 0 0.55448 2 555 555;561 4.897 0 1 82151 1409 1773 897 898 1737;1738 1737 0.01931653466544958 ARTEQQLYQ 9 Unmodified _ARTEQQLYQ_ 0 0 0 REV__nc|ENSG00000186642|O00408-6|PDE2A REV__nc|ENSG00000186642|O00408-6|PDE2A MULTI-MSMS UPN47_class_I_Rep_2 3 568.7872924804688 2 568.78837 1135.56219 0.045387 2.5816E-05 -0.067935 -3.8641E-05 -0.022548 -1.2825E-05 568.7881831745 37.99 0.44331 41.378 41.203 41.647 3.3879 62 34 2 0 0 0 0.47493 1 7368 7368 3.2813 0 1 94322 + 1410 20897 898 899 1739 1739 -0.0001724802177704987 ARTPKVLNQLL 11 Unmodified _ARTPKVLNQLL_ 0 0 0 REV__ENST00000381657.7_3_X:198142-200852:+|nuORF REV__ENST00000381657.7_3_X:198142-200852:+|nuORF MSMS UPN48_class_I_Rep_1 5 626.8890380859375 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.57 1 109.2 108.7 109.7 3.6277 0 0 0 0.38417 1 25430 25430 2.7352 0 1 + 1411 22064 899 900 1740 1740 0.15049316139561597 ARTRMSIPR 9 Unmodified _ARTRMSIPR_ 0 0 0 ENST00000263026.9_1_16:22217912-22237237:+|nuORF ENST00000263026.9_1_16:22217912-22237237:+|nuORF ENST00000263026.9_1_16:22217912-22237237:+|nuORF MSMS UPN47_class_I_Rep_3 4 544.312744140625 2 544.311292 1086.60803 NaN NaN NaN NaN NaN NaN NaN 69.532 1 72.736 72.236 73.236 3.2044 0 0 0 0.38916 1 16958 16958 3.2813 0.54611 1 1412 5976 900 901 1741 1741 0.06819118679482017 ARVAILMLT 9 Unmodified _ARVAILMLT_ 0 0 0 L1PB3_dup1878|chr9:100189889-100190852:-|1.6170296608019077|0.028419053437065|5.83|151.0|16|2|sense L1PB3_dup1878|chr9:100189889-100190852:-|1.6170296608019077|0.028419053437065|5.83|151.0|16|2|sense L1PB3_dup1878|chr9:100189889-100190852:-|1.6170296608019077|0.028419053437065|5.83|151.0|16|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 494.7869873046875 2 494.304613 986.594672 -0.66263 -0.00032754 -0.63832 -0.00031553 -1.301 -0.00064307 494.30426570813495 13.682 0.32788 17.055 16.889 17.217 3.3734 47 38 2 0 0 0 0.12281 1 352 352 4.3292 0.38484 1 24804 1413 15265 901 902 1742 1742 0.10083867847515648 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 626.890625 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 104.04 1 107.57 107.07 108.07 3.5289 0 0 0 0.38417 1 25279 25279 5.2969 0 1 1414 13002 902 903 1743 1743 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 626.8895874023438 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.27 1 108.81 108.31 109.31 3.5327 0 0 0 0.38417 1 25542 25542 5.2969 0 1 1415 13002 902 903 1744 1744 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 626.888671875 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.4 1 108.93 108.43 109.43 3.5327 0 0 0 0.38417 1 25568 25568 5.2969 0 1 1416 13002 902 903 1745 1745 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 626.8897094726562 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 104.4 1 107.92 107.42 108.42 3.5205 0 0 0 0.38417 1 25592 25592 5.2969 0 1 1417 13002 902 903 1746 1746 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 626.888671875 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 104.72 1 108.24 107.74 108.74 3.5205 0 0 0 0.38417 1 25661 25661 5.2969 0 1 1418 13002 902 903 1747 1747 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 626.8890991210938 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 104.81 1 108.34 107.84 108.84 3.5308 0 0 0 0.38417 1 25680 25680 5.2969 0 1 1419 13002 902 903 1748 1748 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 626.8887939453125 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.63 1 109.17 108.67 109.67 3.5308 0 0 0 0.35398 1 25854 25854 8.7454 0 1 1420 13002 902 903 1749 1749 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_1 5 626.8886108398438 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 103.56 1 107.18 106.68 107.68 3.6209 0 0 0 0.38417 1 24967 24967 5.2969 0 1 1421 13002 902 903 1750 1750 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.88916015625 2 626.890429 1251.76631 0.49478 0.00031017 -3.667 -0.0022988 -3.1722 -0.0019886 626.8890849225268 104.02 0.055862 107.72 107.69 107.75 3.6991 11 7 2 0 0 0 0.59712 1 24612 24612 5.2969 0 1 14257000 1422 13002 902 903 1751 1751 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_2 6 626.8895874023438 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 103.98 1 107.68 107.18 108.18 3.6991 0 0 0 0.38417 1 24603 24603 5.2969 0 1 1423 13002 902 903 1752 1752 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.88916015625 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 103.36 1 107.11 106.61 107.61 3.7434 0 0 0 0.38417 1 24414 24414 5.2969 0 1 1424 13002 902 903 1753 1753 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.8895874023438 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 103.71 1 107.45 106.95 107.95 3.7434 0 0 0 0.38417 1 24492 24492 5.2969 0 1 1425 13002 902 903 1754 1754 0.15049316139561597 ARVIRDSPLLL 11 Unmodified _ARVIRDSPLLL_ 0 0 0 L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.891357421875 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 103.76 1 107.5 107 108 3.7434 0 0 0 0.38417 1 24501 24501 5.2969 0 1 1426 13002 902 903 1755 1755 0.15049316139561597 ARVLNVNQ 8 Unmodified _ARVLNVNQ_ 0 0 0 REV__nc|ENSG00000127412|Q9NQA5-2|TRPV5 REV__nc|ENSG00000127412|Q9NQA5-2|TRPV5 MULTI-MSMS UPN47_class_I_Rep_1 2 457.2643737792969 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.82752 1 17654 17654 2.3027 0 1 270870 + 1427 18874 903 904 1756 1756 0.05435722848858404 ARVPKNKV 8 Unmodified _ARVPKNKV_ 0 0 0 REV__Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|2|1|sense REV__Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 456.3012390136719 2 456.292894 910.571235 0.097793 4.4622E-05 -0.73196 -0.00033399 -0.63417 -0.00028937 456.29253895709076 45.885 0.40821 49.522 49.266 49.675 3.6369 47 30 2 0 0 0 0.82752 2 8772 8772;8812 5.2307 0.47466 1 54527 + 1428 32488 904 905 1757;1758 1757 0.11237190125223151 ARVPLYKRR 9 Unmodified _ARVPLYKRR_ 0 0 0 REV__ENST00000563893.5_1_16:29874131-29874308:-|nuORF REV__ENST00000563893.5_1_16:29874131-29874308:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 579.3532104492188 2 579.864549 1157.71454 0.40417 0.00023436 -1.0567 -0.00061272 -0.65249 -0.00037835 579.8629010228996 109.55 0.077431 113.18 113.15 113.23 3.6321 15 9 2 0 0 0 0.12034 1 26617 26617 7.2892 2.5332 1 281050 + 1429 21480 905 906 1759 1759 0.14199617236317863 ARVRDQPGQ 9 Unmodified _ARVRDQPGQ_ 0 0 0 AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|6|2|sense AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|6|2|sense AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 513.7750854492188 2 513.775597 1025.53664 NaN NaN NaN NaN NaN NaN NaN 44.968 1 48.212 47.712 48.712 3.2441 0 0 0 0.39428 1 9481 9481 2.0598 0.40713 1 1430 180 906 907 1760 1760 0.02489322246469783 ARVRFRLKKKK 11 Unmodified _ARVRFRLKKKK_ 0 0 0 AluYm1_dup3542|chr14:21253784-21254079:+|1.226639624095172|0.0155636111100332|6.3|151.0|8|2|sense AluYm1_dup3542|chr14:21253784-21254079:+|1.226639624095172|0.0155636111100332|6.3|151.0|8|2|sense AluYm1_dup3542|chr14:21253784-21254079:+|1.226639624095172|0.0155636111100332|6.3|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 477.3240966796875 3 477.324528 1428.95176 NaN NaN NaN NaN NaN NaN NaN 96.146 1 99.911 99.411 100.41 3.7648 0 0 0 0.38417 1 23848 23848 0 0 1 1431 399 907 908 1761 1761 0.2544376344962984 ARVRFRLKKKK 11 Unmodified _ARVRFRLKKKK_ 0 0 0 AluYm1_dup3542|chr14:21253784-21254079:+|1.226639624095172|0.0155636111100332|6.3|151.0|8|2|sense AluYm1_dup3542|chr14:21253784-21254079:+|1.226639624095172|0.0155636111100332|6.3|151.0|8|2|sense AluYm1_dup3542|chr14:21253784-21254079:+|1.226639624095172|0.0155636111100332|6.3|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 477.32421875 3 477.324528 1428.95176 NaN NaN NaN NaN NaN NaN NaN 96.343 1 99.757 99.257 100.26 3.414 0 0 0 0.38417 1 23902 23902 0 0 1 1432 399 907 908 1762 1762 0.2544376344962984 ARWKIHLLT 9 Unmodified _ARWKIHLLT_ 0 0 0 L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|94|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|94|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|94|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 569.3489379882812 2 569.3482 1136.68185 0.21063 0.00011992 1.2398 0.00070588 1.4504 0.0008258 569.34889233902 30.052 0.25308 30.052 29.917 30.17 0 29 21 2 0 0 0 0.49026 1 4825 4825 1.6526 1.0511 1 162620 1433 13633 908 909 1763 1763 0.11897410113465412 ARYFRRDK 8 Unmodified _ARYFRRDK_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS UPN48_class_I_Rep_2 6 556.310546875 2 556.309606 1110.60466 0.51524 0.00028663 2.1663 0.0012052 2.6816 0.0014918 556.310586916662 66.743 0.49036 70.23 70.091 70.581 3.4866 30 28 2 0 0 0 0.82752 1 15244 15244 2.0598 0.21551 1 61069 + 1434 21279 909 910 1764 1764 0.05378191897125362 ARYGPPLISCL 11 Unmodified _ARYGPPLISCL_ 0 0 0 REV__MER39_dup2258|chr10:75453799-75454491:-|1.260551361563973|0.0089131007025375|7.14|148.0|47|3|anti-sense REV__MER39_dup2258|chr10:75453799-75454491:-|1.260551361563973|0.0089131007025375|7.14|148.0|47|3|anti-sense MSMS UPN46_class_I_Rep_3 1 595.4884643554688 2 595.323534 1188.63251 NaN NaN NaN NaN NaN NaN NaN 57.911 1 57.911 57.411 58.411 0 0 0 0 0.38417 1 12716 12716 1.1933 0.59184 1 + 1435 31272 910 911 1765 1765 0.04574334042354167 ARYPHLGQKP 10 Unmodified _ARYPHLGQKP_ 0 0 0 nc|ENSG00000128989|P56211-2|ARPP19;ENSG00000128989|ENST00000249822|ARPP19 nc|ENSG00000128989|P56211-2|ARPP19 nc|ENSG00000128989|P56211-2|ARPP19 MSMS UPN47_class_I_Rep_2 3 583.8233642578125 2 583.825089 1165.63563 NaN NaN NaN NaN NaN NaN NaN 46.58 1 49.932 49.432 50.432 3.3515 0 0 0 0.53105 1 9922 9922 1.4819 0 1 1436 2610 911 912 1766 1766 0.059433452113808016 ASAAYKADAP 10 Unmodified _ASAAYKADAP_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS UPN48_class_I_Rep_1 5 482.74017333984375 2 482.740357 963.46616 0.12517 6.0423E-05 -0.28985 -0.00013992 -0.16469 -7.9501E-05 482.74008738295754 99.832 0.39049 103.44 103.34 103.73 3.6065 103 46 3 0 0 0 0.56033 1 24135 24135 3.5965 0 1 865600 1437 1010 912 913 1767 1767 -0.0170339586186401 ASADLEKIF 9 Unmodified _ASADLEKIF_ 0 0 0 REV__ENSG00000133401|ENST00000438447|PDZD2 REV__ENSG00000133401|ENST00000438447|PDZD2 MSMS UPN48_class_I_Rep_1 5 497.2723083496094 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 56.257 1 59.758 59.258 60.258 3.5014 0 0 0 0.28608 1 12087 12087 11.495 2.1116 1 + 1438 19058 913 914 1768 1768 0.021303478320419345 ASADLEKIF 9 Unmodified _ASADLEKIF_ 0 0 0 REV__ENSG00000133401|ENST00000438447|PDZD2 REV__ENSG00000133401|ENST00000438447|PDZD2 MSMS UPN48_class_I_Rep_3 7 497.271728515625 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 56.111 1 59.666 59.166 60.166 3.5554 0 0 0 0.28608 1 11955 11955 11.495 2.1116 1 + 1439 19058 913 914 1769 1769 0.021303478320419345 ASALALNSVTV 11 Unmodified _ASALALNSVTV_ 0 0 0 ENST00000458296.1_1_6:32812581-32813517:+|nuORF ENST00000458296.1_1_6:32812581-32813517:+|nuORF ENST00000458296.1_1_6:32812581-32813517:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 523.2978515625 2 523.298039 1044.58152 -0.13968 -7.3095E-05 0.10135 5.3036E-05 -0.038332 -2.0059E-05 523.2980038160911 46.406 0.82385 49.757 49.407 50.231 3.3515 127 59 3 0 0 0 0.2744 1 9816 9816 20.581 0.1664 1 261720 1440 6845 914 915 1770 1770 0.061017082691250835 ASALALNSVTV 11 Unmodified _ASALALNSVTV_ 0 0 0 ENST00000458296.1_1_6:32812581-32813517:+|nuORF ENST00000458296.1_1_6:32812581-32813517:+|nuORF ENST00000458296.1_1_6:32812581-32813517:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 523.2977294921875 2 523.298039 1044.58152 0.19033 9.9601E-05 -0.27413 -0.00014345 -0.083799 -4.3852E-05 523.2978225727111 46.438 0.89125 49.682 49.307 50.199 3.2439 121 57 3 0 0 0 0.29938 1 9899 9899 15.739 0.49014 1 259810 1441 6845 914 915 1771 1771 0.061017082691250835 ASCPPSFLGVD 11 Unmodified _ASCPPSFLGVD_ 0 0 0 LTR8B_dup554|chr6:42316508-42317314:+|1.17068455532913|0.0265254562276172|5.46|150.0|23|3|sense LTR8B_dup554|chr6:42316508-42317314:+|1.17068455532913|0.0265254562276172|5.46|150.0|23|3|sense LTR8B_dup554|chr6:42316508-42317314:+|1.17068455532913|0.0265254562276172|5.46|150.0|23|3|sense MSMS UPN47_class_I_Rep_2 3 546.3077392578125 2 546.755149 1091.49575 NaN NaN NaN NaN NaN NaN NaN 51.395 1 54.733 54.233 55.233 3.3386 0 0 0 0.38417 1 11381 11381 2.7352 1.0826 1 1442 15726 915 916 1772 1772 -0.04634199908014125 ASCRRPIKGAA 11 Unmodified _ASCRRPIKGAA_ 0 0 0 nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO nc|ENSG00000120802|P42167-2|TMPO nc|ENSG00000120802|P42167-2|TMPO MSMS UPN48_class_I_Rep_2 6 565.3155517578125 2 565.316574 1128.6186 NaN NaN NaN NaN NaN NaN NaN 26.521 1 30.155 29.655 30.655 3.6332 0 0 0 0.38417 1 3389 3389 0.96228 0.2719 1 1443 2341 916 917 1773 1773 0.059431013339235506 ASDKETYELRY 11 Unmodified _ASDKETYELRY_ 0 0 0 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 MULTI-SECPEP UPN47_class_I_Rep_1 2 459.171875 3 458.88938 1373.64631 -0.34885 -0.00016009 -0.42413 -0.00019463 -0.77298 -0.00035471 458.8891378827336 34.891 0.72701 38.577 38.238 38.965 3.6859 95 58 2 0 0 0 22.551 1 6290 6290 4.6037 2.351 1 156390 1444 4018 917 918 1774 1774 -0.025567617155275002 ASDKETYELRY 11 Unmodified _ASDKETYELRY_ 0 0 0 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 458.88938 1373.64631 -0.46001 -0.00021109 -0.13902 -6.3793E-05 -0.59902 -0.00027489 458.88923639476246 35.1 0.65803 38.525 38.24 38.898 3.4253 -0.0070547 4.3698E-05 NaN 9.5301 96 45 3 NaN NaN NaN NaN 0 NaN NaN 0 98648 1445 4018 917 918 -0.025567617155275002 ASDKETYELRY 11 Unmodified _ASDKETYELRY_ 0 0 0 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 458.88938 1373.64631 -0.69531 -0.00031907 0.012895 5.9176E-06 -0.68241 -0.00031315 458.8893049138703 35.23 0.6535 38.494 38.286 38.94 3.2639 -0.038266 0.00025283 NaN 9.5301 79 46 2 NaN NaN NaN NaN 0 NaN NaN 0 145750 1446 4018 917 918 -0.025567617155275002 ASDPDEAKL 9 Unmodified _ASDPDEAKL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_1 2 473.22930908203125 2 473.229822 944.445091 -0.35673 -0.00016882 0.27327 0.00012932 -0.083464 -3.9497E-05 473.2299443355774 24.369 0.52383 28.099 27.813 28.337 3.7298 77 41 2 0 0 0 0.20317 3 3158 3121;3158;3198 20.415 10.341 1 104530 1447 4803 918 919 1775;1776;1777 1776 -0.029354059613751815 ASDPDEAKL 9 Unmodified _ASDPDEAKL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_2 3 473.2295837402344 2 473.229822 944.445091 -0.29862 -0.00014132 0.12588 5.9573E-05 -0.17274 -8.1745E-05 473.22981371303194 24.486 0.63279 27.951 27.684 28.317 3.4655 108 56 3 0 0 0 0.15547 3 3289 3214;3252;3289 24.991 11.948 1 102370 1448 4803 918 919 1778;1779;1780 1780 -0.029354059613751815 ASDPDEAKL 9 Unmodified _ASDPDEAKL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_3 4 473.22955322265625 2 473.229822 944.445091 -0.70145 -0.00033195 0.49163 0.00023265 -0.20983 -9.9296E-05 473.2300755053983 24.597 0.57839 27.948 27.693 28.271 3.3509 84 50 2 0 0 0 0.11355 3 3320 3283;3320;3357 31.268 16.43 1 124280 1449 4803 918 919 1781;1782;1783 1782 -0.029354059613751815 ASDYFDQLY 9 Unmodified _ASDYFDQLY_ 0 0 0 ENST00000478561.5_1_3:49137386-49138086:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1 ENST00000478561.5_1_3:49137386-49138086:-|nuORF ENST00000478561.5_1_3:49137386-49138086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 561.2594604492188 2 561.242929 1120.47131 0.35371 0.00019852 0.55447 0.00031119 0.90817 0.00050971 561.2428055588222 68.463 0.43433 71.828 71.546 71.98 3.3646 48 31 3 0 0 0 0.15547 6 16553 16463;16496;16511;16547;16553;16568 24.991 11.354 1 112070 1450 4558 919 920 1784;1785;1786;1787;1788;1789 1788 -0.08411136789891316 ASDYFDQLY 9 Unmodified _ASDYFDQLY_ 0 0 0 ENST00000478561.5_1_3:49137386-49138086:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1 ENST00000478561.5_1_3:49137386-49138086:-|nuORF ENST00000478561.5_1_3:49137386-49138086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 561.25927734375 2 561.242929 1120.47131 0.39467 0.00022151 0.096114 5.3943E-05 0.49078 0.00027545 561.2429590473558 68.622 0.53352 71.892 71.675 72.209 3.2696 84 47 2 0 0 0 0.11355 5 16607 16564;16593;16607;16636;16651 31.268 15.444 1 126750 1451 4558 919 920 1790;1791;1792;1793;1794 1792 -0.08411136789891316 ASDYFDQLY 9 Unmodified _ASDYFDQLY_ 0 0 0 ENST00000478561.5_1_3:49137386-49138086:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1 ENST00000478561.5_1_3:49137386-49138086:-|nuORF ENST00000478561.5_1_3:49137386-49138086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 561.243408203125 2 561.242929 1120.47131 0.44146 0.00024777 0.073857 4.1451E-05 0.51532 0.00028922 561.2429886059854 68.654 0.61208 71.852 71.563 72.175 3.1977 73 46 3 0 0 0 0.088679 7 16710 16634;16673;16678;16710;16713;16748;16753 36.506 17.249 1 105800 1452 4558 919 920 1795;1796;1797;1798;1799;1800;1801 1798 -0.08411136789891316 ASEFPGAQHY 10 Unmodified _ASEFPGAQHY_ 0 0 0 ENST00000566509.5_1_15:73052730-73067416:-|nuORF;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|4|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|3|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|1|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|2|intron;nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK ENST00000566509.5_1_15:73052730-73067416:-|nuORF ENST00000566509.5_1_15:73052730-73067416:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.748291015625 2 553.748713 1105.48287 -0.0164 -9.0815E-06 0.22136 0.00012258 0.20496 0.0001135 553.7487702102384 35.991 0.5828 39.667 39.342 39.925 3.6762 61 39 2 0 0 0 0.41718 1 6666 6666 18.146 4.2403 1 83983 1453 3830 920 921 1802 1802 -0.06564894975895186 ASEFPGAQHY 10 Unmodified _ASEFPGAQHY_ 0 0 0 ENST00000566509.5_1_15:73052730-73067416:-|nuORF;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|4|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|3|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|1|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|2|intron;nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK ENST00000566509.5_1_15:73052730-73067416:-|nuORF ENST00000566509.5_1_15:73052730-73067416:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 553.7488403320312 2 553.748713 1105.48287 0.041577 2.3023E-05 -0.1033 -5.72E-05 -0.061719 -3.4177E-05 553.7487023266286 36.225 0.7723 39.637 39.414 40.187 3.4114 71 56 2 0 0 0 0.43106 2 6791 6791;6830 17.113 3.2068 1 94133 1454 3830 920 921 1803;1804 1803 -0.06564894975895186 ASEFPGAQHY 10 Unmodified _ASEFPGAQHY_ 0 0 0 ENST00000566509.5_1_15:73052730-73067416:-|nuORF;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|4|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|3|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|1|intron;ENSG00000159322.17,ADPGK,chr15,-,I2.1,72775115,72783245|85|15.54|2|intron;nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK ENST00000566509.5_1_15:73052730-73067416:-|nuORF ENST00000566509.5_1_15:73052730-73067416:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.7485961914062 2 553.748713 1105.48287 -0.091169 -5.0484E-05 -0.12985 -7.1902E-05 -0.22101 -0.00012239 553.74859517386 36.438 0.75006 39.693 39.406 40.156 3.2547 74 49 2 0 0 0 0.43106 3 6879 6836;6879;6933 17.113 6.0349 1 108880 1455 3830 920 921 1805;1806;1807 1806 -0.06564894975895186 ASELALATFNS 11 Unmodified _ASELALATFNS_ 0 0 0 REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|57|3|anti-sense REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|57|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 562.3236694335938 2 562.285128 1122.5557 0.37512 0.00021093 0.2805 0.00015772 0.65562 0.00036865 562.2853986945073 64.074 0.49705 67.43 67.113 67.61 3.3557 93 40 3 0 0 0 17.593 1 15194 15194 43.982 3.7426 1 282340 + 1456 26857 921 922 1808 1808 -0.0006718597312556085 ASELALATFNS 11 Unmodified _ASELALATFNS_ 0 0 0 REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|57|3|anti-sense REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|57|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 562.3236694335938 2 562.285128 1122.5557 0.39822 0.00022391 0.57649 0.00032415 0.97471 0.00054807 562.2856613087175 64.3 0.66523 67.556 67.265 67.93 3.2556 121 50 3 0 0 0 4.6935 1 15312 15312 51.415 9.4597 1 350660 + 1457 26857 921 922 1809 1809 -0.0006718597312556085 ASELALATFNS 11 Unmodified _ASELALATFNS_ 0 0 0 REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|57|3|anti-sense REV__L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|57|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 562.3236694335938 2 562.285128 1122.5557 0.43102 0.00024235 0.31722 0.00017837 0.74824 0.00042072 562.2853260460498 64.265 0.61657 67.44 67.181 67.797 3.1741 108 43 3 0 0 0 4.6935 1 15385 15385 51.415 3.8208 1 341710 + 1458 26857 921 922 1810 1810 -0.0006718597312556085 ASELKALGY 9 Unmodified _ASELKALGY_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS UPN47_class_I_Rep_2 3 476.26043701171875 2 476.260925 950.507297 -0.18724 -8.9176E-05 -0.075546 -3.5979E-05 -0.26279 -0.00012516 476.26078486600846 43.212 0.48915 46.57 46.343 46.833 3.358 53 32 2 0 0 0 0.19147 1 8907 8907 21.537 9.8967 1 77791 1459 4751 922 923 1811 1811 0.030063651776117695 ASELKALGY 9 Unmodified _ASELKALGY_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS UPN47_class_I_Rep_3 4 476.26080322265625 2 476.260925 950.507297 -0.26512 -0.00012627 0.065779 3.1328E-05 -0.19934 -9.4938E-05 476.2607801612781 43.379 0.52682 46.621 46.357 46.884 3.2419 55 32 2 0 0 0 0.15547 1 8992 8992 24.991 10.153 1 79209 1460 4751 922 923 1812 1812 0.030063651776117695 ASESVNMEFY 10 Unmodified _ASESVNMEFY_ 0 0 0 REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|30|2|sense REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 588.7474975585938 2 588.747521 1175.48049 0.51783 0.00030487 0.10626 6.2561E-05 0.62409 0.00036743 588.7475428296893 55.388 0.71165 58.698 58.339 59.051 3.3102 93 41 3 0 0 0 0.29514 1 12625 12625 34.402 2.0962 1 224980 + 1461 28738 923 924 1813 1813 -0.10023111495866033 ASETDWTTPQ 10 Unmodified _ASETDWTTPQ_ 0 0 0 REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 568.2489013671875 2 568.248743 1134.48293 0.4496 0.00025549 0.45729 0.00025985 0.90689 0.00051534 568.2490278650789 72.341 0.5507 75.814 75.54 76.091 3.4732 69 47 2 0 0 0 0.54822 1 16932 16932 5.7319 1.5423 1 223900 + 1462 30617 924 925 1814 1814 -0.07892939766566087 ASETDWTTPQ 10 Unmodified _ASETDWTTPQ_ 0 0 0 REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.249267578125 2 568.248743 1134.48293 0.47919 0.0002723 0.36522 0.00020753 0.84441 0.00047983 568.2490370512984 72.191 0.54537 75.756 75.446 75.992 3.5645 98 56 2 0 0 0 0.4561 2 16844 16844;16920 15.248 3.0737 1 179530 + 1463 30617 924 925 1815;1816 1815 -0.07892939766566087 ASETDWTTPQ 10 Unmodified _ASETDWTTPQ_ 0 0 0 REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.2495727539062 2 568.248743 1134.48293 0.50689 0.00028804 0.35549 0.00020201 0.86238 0.00049004 568.2490599520166 72.176 0.67421 75.703 75.451 76.125 3.5266 106 66 2 0 0 0 0.4965 1 16799 16799 12.241 2.6967 1 216590 + 1464 30617 924 925 1817 1817 -0.07892939766566087 ASETDWTTPQ 10 Unmodified _ASETDWTTPQ_ 0 0 0 REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|24|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 568.8025512695312 2 568.248743 1134.48293 0.50689 0.00028804 0.35549 0.00020201 0.86238 0.00049004 568.2490599520166 72.176 0.67421 75.703 75.451 76.125 3.5266 106 66 2 0 0 0 0.84575 1 16842 16842 15.248 3.6082 1 216590 + 1465 30617 924 925 1818 1818 -0.07892939766566087 ASETGFLTY 9 Unmodified _ASETGFLTY_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-SECPEP UPN47_class_I_Rep_1 2 494.73455810546875 2 494.73474 987.454927 0.18971 9.3858E-05 -0.30383 -0.00015032 -0.11412 -5.646E-05 494.7345942161311 59.757 0.52093 63.155 62.98 63.501 3.3982 54 31 2 0 0 0 0.073107 1 13910 13910 29.082 18.258 1 112710 1466 5667 925 926 1819 1819 -0.03930217956008164 ASETGFLTY 9 Unmodified _ASETGFLTY_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-SECPEP UPN47_class_I_Rep_2 3 494.7347717285156 2 494.73474 987.454927 0.31641 0.00015654 -0.21629 -0.00010701 0.10011 4.9529E-05 494.73459986405317 60.043 0.60919 63.317 63.059 63.668 3.2731 61 35 2 0 0 0 0.044245 1 14028 14028 49.933 30.676 1 150260 1467 5667 925 926 1820 1820 -0.03930217956008164 ASETGFLTY 9 Unmodified _ASETGFLTY_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS UPN47_class_I_Rep_3 4 494.7343444824219 2 494.73474 987.454927 0.13683 6.7694E-05 -0.054909 -2.7165E-05 0.08192 4.0529E-05 494.7347282161194 60.091 0.57382 63.256 63.017 63.59 3.1651 55 33 2 0 0 0 0.066633 3 14095 14050;14095;14140 41.84 22.583 1 86997 1468 5667 925 926 1821;1822;1823 1822 -0.03930217956008164 ASEYDQIRY 9 Unmodified _ASEYDQIRY_ 0 0 0 nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2 nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 MULTI-SECPEP UPN47_class_I_Rep_1 2 572.7677612304688 2 572.767103 1143.51965 -0.048691 -2.7889E-05 -0.06375 -3.6514E-05 -0.11244 -6.4403E-05 572.7670603408924 39.433 0.64491 43.099 42.69 43.335 3.6668 69 45 2 0 0 0 0.1229 1 7704 7704 4.897 0 1 107540 1469 3996 926 927 1824 1824 -0.046366431500018734 ASEYDQIRY 9 Unmodified _ASEYDQIRY_ 0 0 0 nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2 nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 MULTI-MSMS UPN47_class_I_Rep_2 3 572.7664184570312 2 572.767103 1143.51965 0.045154 2.5862E-05 -0.036787 -2.107E-05 0.0083665 4.792E-06 572.7669533959581 39.734 0.49972 43.112 42.806 43.306 3.3785 43 33 2 0 0 0 0.2924 2 7856 7819;7856 14.405 5.8121 1 79092 1470 3996 926 927 1825;1826 1826 -0.046366431500018734 ASEYDQIRY 9 Unmodified _ASEYDQIRY_ 0 0 0 nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2 nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 MULTI-MSMS UPN47_class_I_Rep_3 4 572.7669067382812 2 572.767103 1143.51965 -0.034243 -1.9613E-05 -0.36962 -0.00021171 -0.40386 -0.00023132 572.7667267587077 39.975 0.63827 43.212 42.967 43.606 3.2372 57 42 2 0 0 0 0.2924 1 7913 7913 14.405 5.8121 1 86498 1471 3996 926 927 1827 1827 -0.046366431500018734 ASFCLVTIEY 10 Unmodified _ASFCLVTIEY_ 0 0 0 REV__L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|127|3|anti-sense REV__L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|127|3|anti-sense MSMS UPN47_class_I_Rep_3 4 573.282470703125 2 573.281 1144.54745 NaN NaN NaN NaN NaN NaN NaN 52.969 1 56.164 55.664 56.664 3.1948 0 0 0 0.53105 1 11910 11910 6.2058 0.47393 1 + 1472 29059 927 928 1828 1828 -0.01904456214106176 ASFEKDEWP 9 Unmodified _ASFEKDEWP_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MSMS UPN47_class_I_Rep_2 3 555.2220458984375 2 554.750921 1107.48729 NaN NaN NaN NaN NaN NaN NaN 28.906 1 32.405 31.905 32.905 3.4986 0 0 0 0.39428 1 4553 4553 2.0598 0 1 + 1473 19250 928 929 1829 1829 -0.06215430552992984 ASFKPLGL 8 Unmodified _ASFKPLGL_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-SECPEP UPN48_class_I_Rep_1 5 416.74993896484375 2 416.749996 831.485439 -0.11244 -4.6859E-05 0.23676 9.8669E-05 0.12432 5.181E-05 416.7499864454383 52.632 0.84981 56.151 55.82 56.67 3.5192 152 69 3 0 0 0 0.72333 1 10986 10986 58.679 22.552 1 551760 1474 2447 929 930 1830 1830 0.06295605219713707 ASFKPLGL 8 Unmodified _ASFKPLGL_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MATCH UPN48_class_I_Rep_2 6 2 416.749996 831.485439 0.12159 5.0671E-05 -0.0066554 -2.7736E-06 0.11493 4.7898E-05 416.7499196565173 52.5 0.86187 56.139 55.826 56.687 3.639 -0.025889 -0.00011327 NaN 58.679 128 62 3 NaN NaN NaN NaN 0 NaN NaN 0 541410 1475 2447 929 930 0.06295605219713707 ASFKPLGL 8 Unmodified _ASFKPLGL_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MATCH UPN48_class_I_Rep_3 7 2 416.749996 831.485439 -0.035487 -1.4789E-05 0.15451 6.439E-05 0.11902 4.9601E-05 416.7499580776177 52.607 0.86097 56.205 55.817 56.678 3.5979 0.039841 2.1058E-05 NaN 58.679 148 64 3 NaN NaN NaN NaN 0 NaN NaN 0 434240 1476 2447 929 930 0.06295605219713707 ASFSSLLTY 9 Unmodified _ASFSSLLTY_ 0 0 0 ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENST00000591563.5_1_17:73828844-73835996:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 494.7527160644531 2 494.752933 987.491313 0.20821 0.00010301 -0.47257 -0.0002338 -0.26436 -0.00013079 494.7525811496251 74.13 0.35301 77.62 77.348 77.701 3.49 56 32 2 0 0 0 0.023254 2 17495 17461;17495 61.357 21.4 1 453740 1477 1397 930 931 1831;1832 1832 -0.0029334105928455756 ASFSSLLTY 9 Unmodified _ASFSSLLTY_ 0 0 0 ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENST00000591563.5_1_17:73828844-73835996:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 495.25494384765625 2 494.752933 987.491313 0.208 0.00010291 0.097298 4.8139E-05 0.3053 0.00015105 494.7527769506865 74.252 0.23956 77.742 77.685 77.925 3.49 40 29 2 0 0 0 0.032038 1 17533 17533 56.177 18.203 1 128900 1478 1397 930 931 1833 1833 -0.0029334105928455756 ASFSSLLTY 9 Unmodified _ASFSSLLTY_ 0 0 0 ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENST00000591563.5_1_17:73828844-73835996:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 494.7528991699219 2 494.752933 987.491313 0.26828 0.00013273 -0.41023 -0.00020296 -0.14194 -7.0226E-05 494.7526829404544 74.003 0.47687 77.581 77.289 77.766 3.5779 79 53 2 0 0 0 0.012845 2 17400 17362;17400 68.081 18.148 1 183670 1479 1397 930 931 1834;1835 1835 -0.0029334105928455756 ASFSSLLTY 9 Unmodified _ASFSSLLTY_ 0 0 0 ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENST00000591563.5_1_17:73828844-73835996:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 494.7531433105469 2 494.752933 987.491313 0.29882 0.00014784 -0.26762 -0.00013241 0.031197 1.5435E-05 494.75267940108057 74.029 0.28008 77.58 77.429 77.709 3.5505 50 35 2 0 0 0 0.082592 1 17364 17364 37.974 7.3375 1 175300 1480 1397 930 931 1836 1836 -0.0029334105928455756 ASFSSLLTY 9 Unmodified _ASFSSLLTY_ 0 0 0 ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENST00000591563.5_1_17:73828844-73835996:-|nuORF MSMS UPN48_class_I_Rep_3 7 494.7529602050781 2 494.752933 987.491313 NaN NaN NaN NaN NaN NaN NaN 73.876 1 77.427 76.927 77.927 3.5505 0 0 0 0.10315 1 17302 17302 24.021 5.8742 1 1481 1397 930 931 1837 1837 -0.0029334105928455756 ASFSSLLTY 9 Unmodified _ASFSSLLTY_ 0 0 0 ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENST00000591563.5_1_17:73828844-73835996:-|nuORF MSMS UPN48_class_I_Rep_3 7 494.75274658203125 2 494.752933 987.491313 NaN NaN NaN NaN NaN NaN NaN 73.996 1 77.547 77.047 78.047 3.5505 0 0 0 0.023553 1 17333 17333 52.268 14.294 1 1482 1397 930 931 1838 1838 -0.0029334105928455756 ASGDPALAQR 10 Unmodified _ASGDPALAQR_ 0 0 0 ENSG00000174989.13,FBXW8,chr12,+,I10.1,117010451,117024146|62|8.94|1|intron;ENSG00000174989|ENST00000652555|FBXW8 ENSG00000174989.13,FBXW8,chr12,+,I10.1,117010451,117024146|62|8.94|1|intron ENSG00000174989.13,FBXW8,chr12,+,I10.1,117010451,117024146|62|8.94|1|intron MSMS UPN46_class_I_Rep_3 1 493.25787353515625 2 493.256705 984.498858 NaN NaN NaN NaN NaN NaN NaN 35.743 1 35.743 35.243 36.243 0 0 0 0 0.53105 1 6544 6544 3.2813 0.39209 1 1483 4703 931 932 1839 1839 0.0059881126099980975 ASGKHGQPK 9 Unmodified _ASGKHGQPK_ 0 0 0 nc|ENSG00000068615|Q9H902-2|REEP1;nc|ENSG00000068615|Q9H902|REEP1;nc|ENSG00000068615|Q9H902-3|REEP1;ENSG00000068615|ENST00000538924|REEP1 nc|ENSG00000068615|Q9H902-2|REEP1 nc|ENSG00000068615|Q9H902-2|REEP1 MSMS UPN46_class_I_Rep_3 1 455.2483825683594 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 52.346 1 52.346 51.846 52.846 0 0 0 0 0.36505 1 11188 11188 7.2892 2.0586 1 1484 1050 932 933 1840 1840 0.024911498147503153 ASGNHHSTLYF 11 Unmodified _ASGNHHSTLYF_ 0 0 0 L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|79|3|anti-sense L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|79|3|anti-sense L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_1 2 617.2859497070312 2 617.285994 1232.55744 NaN NaN NaN NaN NaN NaN NaN 45.713 1 49.413 48.913 49.913 3.6999 0 0 0 0.38417 1 9628 9628 1.1933 0 1 1485 10037 933 934 1841 1841 -0.049541321645165226 ASGVFTFHE 9 Unmodified _ASGVFTFHE_ 0 0 0 HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|47|2|anti-sense HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|47|2|anti-sense HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|47|2|anti-sense MSMS UPN46_class_I_Rep_3 1 497.7352600097656 2 497.735074 993.455596 NaN NaN NaN NaN NaN NaN NaN 13.969 1 13.969 13.469 14.469 0 0 0 0 0.37476 1 517 517 6.7232 0 1 1486 7801 934 935 1842 1842 -0.0413937851629953 ASHIPCLFYD 10 Unmodified _ASHIPCLFYD_ 0 0 0 REV__L1MDa_dup231|chr1:155384699-155385161:-|1.455404146520154|0.0192409296100352|6.24|151.0|26|2|anti-sense REV__L1MDa_dup231|chr1:155384699-155385161:-|1.455404146520154|0.0192409296100352|6.24|151.0|26|2|anti-sense MSMS UPN48_class_I_Rep_3 7 583.2733764648438 2 583.270967 1164.52738 NaN NaN NaN NaN NaN NaN NaN 81.466 1 85.151 84.651 85.651 3.685 0 0 0 0.53105 1 19286 19286 1.4819 0.15237 1 + 1487 27510 935 936 1843 1843 -0.048302071540774705 ASHPFIRRKR 10 Unmodified _ASHPFIRRKR_ 0 0 0 REV__ENST00000472200.1_1_3:136538525-136538843:+|nuORF REV__ENST00000472200.1_1_3:136538525-136538843:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 634.3792114257812 2 634.378355 1266.74216 0.63451 0.00040252 -0.7747 -0.00049146 -0.1402 -8.8939E-05 634.3783907240943 104.15 0.42486 107.67 107.61 108.04 3.5289 116 68 2 0 0 0 0.54078 1 25321 25321 6.7232 0.99131 1 57862000 + 1488 22506 936 937 1844 1844 0.1194552049653339 ASHRRRRRRRR 11 Unmodified _ASHRRRRRRRR_ 0 0 0 REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF MSMS UPN48_class_I_Rep_3 7 521.6571655273438 3 521.656445 1561.94751 NaN NaN NaN NaN NaN NaN NaN 55.747 1 59.303 58.803 59.803 3.5554 0 0 0 0.38417 1 11848 11848 0.08335 0 1 + 1489 21870 937 938 1845 1845 0.18901111799300452 ASHTYPSSWT 10 Unmodified _ASHTYPSSWT_ 0 0 0 REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF MSMS UPN47_class_I_Rep_1 2 568.7548828125 2 568.753995 1135.49344 NaN NaN NaN NaN NaN NaN NaN 22.841 1 26.545 26.045 27.045 3.7042 0 0 0 0.53105 1 2724 2724 3.5965 0.60125 1 + 1490 22511 938 939 1846 1846 -0.06888912321483076 ASIIPTLWQVQ 11 Unmodified _ASIIPTLWQVQ_ 0 0 0 REV__FRAM_dup2857|chr7:72995510-72995667:+|1.1360223870413992|0.3046368937600221|1.9|149.0|8|3|sense REV__FRAM_dup2857|chr7:72995510-72995667:+|1.1360223870413992|0.3046368937600221|1.9|149.0|8|3|sense MSMS UPN47_class_I_Rep_3 4 628.3535766601562 2 628.355888 1254.69722 NaN NaN NaN NaN NaN NaN NaN 52.222 1 55.427 54.927 55.927 3.2055 0 0 0 0.38417 1 11687 11687 2.4985 0.43874 1 + 1491 23325 939 940 1847 1847 0.08006232119987544 ASIIPTLWQVQ 11 Unmodified _ASIIPTLWQVQ_ 0 0 0 REV__FRAM_dup2857|chr7:72995510-72995667:+|1.1360223870413992|0.3046368937600221|1.9|149.0|8|3|sense REV__FRAM_dup2857|chr7:72995510-72995667:+|1.1360223870413992|0.3046368937600221|1.9|149.0|8|3|sense MSMS UPN47_class_I_Rep_3 4 628.3546752929688 2 628.355888 1254.69722 NaN NaN NaN NaN NaN NaN NaN 52.379 1 55.585 55.085 56.085 3.2055 0 0 0 0.38417 1 11736 11736 2.4985 0.65425 1 + 1492 23325 939 940 1848 1848 0.08006232119987544 ASIRQLLL 8 Unmodified _ASIRQLLL_ 0 0 0 REV__L1PA6_dup1722|chr4:142648200-142654383:+|1.3570551238417865|0.1138459944263865|3.58|151.0|138|3|sense REV__L1PA6_dup1722|chr4:142648200-142654383:+|1.3570551238417865|0.1138459944263865|3.58|151.0|138|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.2951965332031 2 457.295102 912.575651 0.09829 4.4948E-05 -0.015247 -6.9722E-06 0.083043 3.7975E-05 457.29502976119363 57.101 0.81625 60.644 60.356 61.172 3.5427 145 78 2 0 0 0 0.82752 1 12307 12307 43.858 0.085901 1 524520 + 1493 29847 940 941 1849 1849 0.11586654548136721 ASIVPRLWRAW 11 Unmodified _ASIVPRLWRAW_ 0 0 0 REV__AluSx_dup44459|chr7:74868320-74868629:+|1.1125469404993902|0.0938604111583429|3.57|150.0|1|1|sense REV__AluSx_dup44459|chr7:74868320-74868629:+|1.1125469404993902|0.0938604111583429|3.57|150.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.2627868652344 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.68024 1 12786 12786 0.50596 0.50596 1 500210 + 1494 17140 941 942 1850 1850 0.1042415557926688 ASKARPISGE 10 Unmodified _ASKARPISGE_ 0 0 0 ENST00000265734.8_1_7:92462693-92462771:-|nuORF ENST00000265734.8_1_7:92462693-92462771:-|nuORF ENST00000265734.8_1_7:92462693-92462771:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 508.2799072265625 2 508.28018 1014.54581 -0.28827 -0.00014652 -0.29449 -0.00014968 -0.58276 -0.00029621 508.27998403069967 13.557 0.43656 13.557 13.443 13.88 0 94 49 3 0 0 0 0.52562 1 436 436 8.7454 2.0222 1 148090 1495 5999 942 943 1851 1851 0.03911670812135526 ASKEEATTF 9 Unmodified _ASKEEATTF_ 0 0 0 ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL ENST00000556921.1_1_14:100551177-100572452:+|nuORF ENST00000556921.1_1_14:100551177-100572452:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 492.2373352050781 2 492.237647 982.460741 -0.048805 -2.4024E-05 -0.093372 -4.5961E-05 -0.14218 -6.9985E-05 492.237545884877 25.979 0.70857 25.979 25.73 26.438 0 109 63 2 0 0 0 0.16799 2 3650 3608;3650 23.79 3.3752 1 127770 1496 5301 943 944 1852;1853 1853 -0.031191194443408676 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.8886108398438 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.42 1 108.18 107.68 108.68 3.7627 0 0 0 0.38417 1 25648 25648 4.897 0 1 1497 13952 944 945 1854 1854 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.8892822265625 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.82 1 108.56 108.06 109.06 3.7395 0 0 0 0.38417 1 25741 25741 4.897 0 1 1498 13952 944 945 1855 1855 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.8897705078125 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.2 1 108.94 108.44 109.44 3.7395 0 0 0 0.38417 1 25828 25828 4.897 0 1 1499 13952 944 945 1856 1856 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.8900756835938 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.63 1 109.37 108.87 109.87 3.7395 0 0 0 0.38417 1 25915 25915 4.897 0 1 1500 13952 944 945 1857 1857 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.8898315429688 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.96 1 109.67 109.17 110.17 3.7088 0 0 0 0.38417 1 25987 25987 4.897 0 1 1501 13952 944 945 1858 1858 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_2 3 626.8890991210938 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.02 1 108.55 108.05 109.05 3.5327 0 0 0 0.38417 1 25490 25490 4.897 0 1 1502 13952 944 945 1859 1859 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_3 4 626.889404296875 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.52 1 108.04 107.54 108.54 3.5205 0 0 0 0.38417 1 25618 25618 4.897 0 1 1503 13952 944 945 1860 1860 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN47_class_I_Rep_3 4 626.8894653320312 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.96 1 109.5 109 110 3.5367 0 0 0 0.38417 1 25923 25923 4.897 0 1 1504 13952 944 945 1861 1861 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN48_class_I_Rep_2 6 626.889892578125 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.91 1 108.6 108.1 109.1 3.6901 0 0 0 0.38417 1 24826 24826 4.897 0 1 1505 13952 944 945 1862 1862 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN48_class_I_Rep_2 6 626.888916015625 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.16 1 108.85 108.35 109.35 3.6901 0 0 0 0.38417 1 24879 24879 4.897 0 1 1506 13952 944 945 1863 1863 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN48_class_I_Rep_2 6 626.888671875 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.33 1 109.02 108.52 109.52 3.6901 0 0 0 0.38417 1 24915 24915 4.897 0 1 1507 13952 944 945 1864 1864 0.14328583539145257 ASKFVFLLKIS 11 Unmodified _ASKFVFLLKIS_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|147|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.8889770507812 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.77 1 109.47 108.97 109.97 3.702 0 0 0 0.38417 1 24958 24958 4.897 0 1 1508 13952 944 945 1865 1865 0.14328583539145257 ASKLKPERQ 9 Unmodified _ASKLKPERQ_ 0 0 0 Tigger1_dup361|chr1:90954707-90956419:-|1.3686055864492748|0.0470824599945761|4.86|151.0|13|1|sense Tigger1_dup361|chr1:90954707-90956419:-|1.3686055864492748|0.0470824599945761|4.86|151.0|13|1|sense Tigger1_dup361|chr1:90954707-90956419:-|1.3686055864492748|0.0470824599945761|4.86|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.7538452148438 2 528.811648 1055.60874 -0.27671 -0.00014633 -0.0051964 -2.7479E-06 -0.2819 -0.00014907 528.8116543014431 28.641 0.449 31.975 31.803 32.252 3.3337 63 37 2 0 0 0 0.48846 1 4476 4476 1.8442 0 1 45231 1509 33083 945 946 1866 1866 0.08316236600171578 ASKPGKKISF 10 Unmodified _ASKPGKKISF_ 0 0 0 REV__nc|ENSG00000134369|Q8NEY1-5|NAV1 REV__nc|ENSG00000134369|Q8NEY1-5|NAV1 MSMS UPN48_class_I_Rep_1 5 531.8167724609375 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 90.472 1 94.098 93.598 94.598 3.626 0 0 0 0.53105 1 21743 21743 1.1933 0 1 + 1510 19098 946 947 1867 1867 0.09498308748311501 ASKRSLGEPA 10 Unmodified _ASKRSLGEPA_ 0 0 0 ENSG00000178718|ENST00000322177|RPP25 ENSG00000178718|ENST00000322177|RPP25 ENSG00000178718|ENST00000322177|RPP25 MULTI-MSMS UPN46_class_I_Rep_3 1 508.2798156738281 2 508.28018 1014.54581 -0.28827 -0.00014652 -0.29449 -0.00014968 -0.58276 -0.00029621 508.27998403069967 13.557 0.43656 13.557 13.443 13.88 0 94 49 3 0 0 0 0.54822 1 405 405 5.7319 2.1354 1 148090 1511 4833 947 948 1868 1868 0.039116708121468946 ASKSVVKY 8 Unmodified _ASKSVVKY_ 0 0 0 L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|37|3|anti-sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|37|3|anti-sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 441.25830078125 2 441.258185 880.501818 NaN NaN NaN NaN NaN NaN NaN 30.765 1 30.765 30.265 31.265 0 0 0 0 0.40625 1 5056 5056 2.3027 0 1 1512 9108 948 949 1869 1869 0.05678686385806486 ASLFLILEEK 10 Unmodified _ASLFLILEEK_ 0 0 0 L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.8390502929688 2 581.839539 1161.66453 0.63472 0.0003693 -0.6789 -0.00039501 -0.044184 -2.5708E-05 581.8390761442647 108.68 0.58515 112.21 112.15 112.74 3.5333 86 67 2 0 0 0 0.55448 1 26444 26444 4.897 1.6157 1 5819700 1513 8767 949 950 1870 1870 0.09016024997140448 ASLFLILEEK 10 Unmodified _ASLFLILEEK_ 0 0 0 L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.8402709960938 2 581.839539 1161.66453 0.40523 0.00023578 -0.75377 -0.00043857 -0.34853 -0.00020279 581.8391419828343 108.72 0.50499 112.35 112.23 112.74 3.6321 89 58 2 0 0 0 0.53004 2 26303 26303;26357 8.1555 2.8586 1 5020900 1514 8767 949 950 1871;1872 1871 0.09016024997140448 ASLFLILEEK 10 Unmodified _ASLFLILEEK_ 0 0 0 L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.8391723632812 2 581.839539 1161.66453 0.48014 0.00027936 -0.66462 -0.0003867 -0.18448 -0.00010734 581.8390824206934 108.77 0.38037 112.45 112.25 112.63 3.6746 49 34 2 0 0 0 0.53004 1 25795 25795 8.1555 2.4237 1 3157300 1515 8767 949 950 1873 1873 0.09016024997140448 ASLFLILEEK 10 Unmodified _ASLFLILEEK_ 0 0 0 L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense L1M3_dup4387|chr10:75442426-75443894:-|2.2360847514217044|0.0138484474630231|7.34|149.0|77|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.8392333984375 2 581.839539 1161.66453 0.49127 0.00028584 -0.62304 -0.00036251 -0.13177 -7.6667E-05 581.8391530466788 108.71 0.1716 112.38 112.3 112.47 3.6751 24 18 2 0 0 0 0.53004 1 25741 25741 8.1555 2.4237 1 5175700 1516 8767 949 950 1874 1874 0.09016024997140448 ASLFRNFL 8 Unmodified _ASLFRNFL_ 0 0 0 nc|ENSG00000141564|Q8N122-2|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF;ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR nc|ENSG00000141564|Q8N122-2|RPTOR nc|ENSG00000141564|Q8N122-2|RPTOR MSMS UPN48_class_I_Rep_2 6 484.2733459472656 2 484.271627 966.528701 NaN NaN NaN NaN NaN NaN NaN 69.549 1 73.07 72.57 73.57 3.5216 0 0 0 0.4044 1 16118 16118 4.756 0.42677 1 1517 3226 950 951 1875 1875 0.044097949970023365 ASLGHILVF 9 Unmodified _ASLGHILVF_ 0 0 0 ENST00000592818.5_1_19:35629760-35632121:+|nuORF;ENST00000587056.1_1_19:35630914-35632121:+|nuORF;ENSG00000266964|ENST00000351325|FXYD1 ENST00000592818.5_1_19:35629760-35632121:+|nuORF ENST00000592818.5_1_19:35629760-35632121:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 478.7814025878906 2 478.781828 955.549102 0.17219 8.2444E-05 -0.28594 -0.0001369 -0.11375 -5.4459E-05 478.78137875038016 67.851 0.41533 71.302 71.13 71.545 3.4517 45 30 2 0 0 0 0.32219 1 15625 15625 12.532 3.1841 1 90603 1518 5801 951 952 1876 1876 0.06954965656814238 ASLKEELILF 10 Unmodified _ASLKEELILF_ 0 0 0 REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|159|2|anti-sense REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|159|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.8399047851562 2 581.839539 1161.66453 0.63472 0.0003693 -0.6789 -0.00039501 -0.044184 -2.5708E-05 581.8390761442647 108.68 0.58515 112.21 112.15 112.74 3.5333 86 67 2 0 0 0 0.54822 1 26384 26384 5.7319 5.7319 1 5819700 + 1519 25469 952 953 1877 1877 0.09016024997140448 ASLRGALLL 9 Unmodified _ASLRGALLL_ 0 0 0 ENSG00000122707|ENST00000377966|RECK;ENST00000475774.5_1_9:36036974-36058840:+|nuORF;ENST00000479053.1_1_9:36036974-36085209:+|nuORF ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK MULTI-MSMS UPN48_class_I_Rep_1 5 457.294921875 2 457.295102 912.575651 0.13414 6.1339E-05 -0.13486 -6.1673E-05 -0.00072921 -3.3346E-07 457.29502352287494 57.359 0.87638 60.853 60.469 61.345 3.4942 127 75 3 0 0 0 0.081756 2 12469 12427;12469 38.176 0.37917 1 494010 1520 2396 953 954 1878;1879 1879 0.11586654548136721 ASLRGALLL 9 Unmodified _ASLRGALLL_ 0 0 0 ENSG00000122707|ENST00000377966|RECK;ENST00000475774.5_1_9:36036974-36058840:+|nuORF;ENST00000479053.1_1_9:36036974-36085209:+|nuORF ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK MULTI-MSMS UPN48_class_I_Rep_3 7 457.294921875 2 457.295102 912.575651 0.09829 4.4948E-05 -0.015247 -6.9722E-06 0.083043 3.7975E-05 457.29502976119363 57.101 0.81625 60.644 60.356 61.172 3.5427 145 78 2 0 0 0 0.11355 1 12346 12346 31.268 0.6318 1 524520 1521 2396 953 954 1880 1880 0.11586654548136721 ASLSSVFAGLP 11 Unmodified _ASLSSVFAGLP_ 0 0 0 nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1 nc|ENSG00000120685|Q86XN7-2|PROSER1 nc|ENSG00000120685|Q86XN7-2|PROSER1 MSMS UPN47_class_I_Rep_1 2 524.7893676757812 2 524.787307 1047.56006 NaN NaN NaN NaN NaN NaN NaN 35.282 1 38.959 38.459 39.459 3.6762 0 0 0 0.38417 1 6452 6452 5.7319 0.43497 1 1522 2333 954 955 1881 1881 0.03818323240443533 ASLTKILVI 9 Unmodified _ASLTKILVI_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-SECPEP UPN48_class_I_Rep_3 7 478.63714599609375 2 479.320786 956.627018 0.25173 0.00012066 -0.30352 -0.00014548 -0.051787 -2.4823E-05 479.3205687309584 64.85 0.59853 68.358 68.14 68.739 3.5083 63 44 2 0 0 0 0.11959 1 14648 14648 8.7454 0 1 188780 1523 3746 955 956 1882 1882 0.14696978522169957 ASLVIFMQLR 10 Unmodified _ASLVIFMQLR_ 0 0 0 ENST00000492830.5_1_16:56419897-56437006:-|nuORF;ENSG00000159461|ENST00000290649|AMFR ENST00000492830.5_1_16:56419897-56437006:-|nuORF ENST00000492830.5_1_16:56419897-56437006:-|nuORF MSMS UPN48_class_I_Rep_1 5 589.3436889648438 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 84.078 1 87.675 87.175 88.175 3.5973 0 0 0 0.53105 1 20124 20124 1.4819 0.8804 1 1524 3840 956 957 1883 1883 0.08763210939059718 ASLVTAQKR 9 Unmodified _ASLVTAQKR_ 0 0 0 REV__MLT1F2_dup4928|chr15:72483162-72483539:-|1.6006487109095573|0.0172944383920162|6.53|151.0|7|2|sense REV__MLT1F2_dup4928|chr15:72483162-72483539:-|1.6006487109095573|0.0172944383920162|6.53|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 487.2933044433594 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 94.509 1 98.13 97.63 98.63 3.6208 0 0 0 0.39518 1 22746 22746 1.8442 0 1 + 1525 31721 957 958 1884 1884 0.08424565054428967 ASPKKETLI 9 Unmodified _ASPKKETLI_ 0 0 0 nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29 nc|ENSG00000048471|Q8TEQ0-2|SNX29 nc|ENSG00000048471|Q8TEQ0-2|SNX29 MULTI-MSMS UPN47_class_I_Rep_3 4 493.7971496582031 2 493.797675 985.580796 -0.50321 -0.00024849 0.81475 0.00040232 0.31153 0.00015383 493.7980996527671 24.246 0.49201 27.597 27.446 27.938 3.3509 52 39 2 0 0 0 0.48846 1 3317 3317 1.8442 1.1539 1 64224 1526 895 958 959 1885 1885 0.08742913620108084 ASPLFGYEL 9 Unmodified _ASPLFGYEL_ 0 0 0 nc|ENSG00000002745|Q9UBV4-2|WNT16;ENSG00000002745|ENST00000222462|WNT16 nc|ENSG00000002745|Q9UBV4-2|WNT16 nc|ENSG00000002745|Q9UBV4-2|WNT16 MULTI-MSMS UPN47_class_I_Rep_1 2 498.7552490234375 2 498.755475 995.496398 0.18333 9.1437E-05 0.15666 7.8135E-05 0.33999 0.00016957 498.7554670534669 76.094 0.4616 79.497 79.19 79.652 3.4034 61 43 2 0 0 0 0.35081 1 18762 18762 10.824 10.824 1 84530 1527 674 959 960 1886 1886 -0.0015303719667372206 ASPPLFVQK 9 Unmodified _ASPPLFVQK_ 0 0 0 REV__MER6B_dup280|chr6:159786170-159786359:+|1.1351122068373585|0.4306592419657115|1.4|151.0|8|1|anti-sense REV__MER6B_dup280|chr6:159786170-159786359:+|1.1351122068373585|0.4306592419657115|1.4|151.0|8|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.7862854003906 2 493.78711 985.559667 0.24757 0.00012225 -0.80065 -0.00039535 -0.55308 -0.00027311 493.78654591612695 108.78 0.44582 112.45 112.31 112.76 3.6751 75 48 3 0 0 0 0.46434 1 25800 25800 4.3292 2.0265 1 10972000 + 1528 31551 960 961 1887 1887 0.06630948311226348 ASPVLPFHI 9 Unmodified _ASPVLPFHI_ 0 0 0 MLT2A1_dup38|chr1:52444511-52444906:+|2.8223681709122945|0.2812386620062437|3.33|151.0|28|3|anti-sense MLT2A1_dup38|chr1:52444511-52444906:+|2.8223681709122945|0.2812386620062437|3.33|151.0|28|3|anti-sense MLT2A1_dup38|chr1:52444511-52444906:+|2.8223681709122945|0.2812386620062437|3.33|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.78076171875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 20.992 1 24.341 23.841 24.841 3.3496 0 0 0 0.39428 1 2270 2270 2.0598 0 1 1529 16499 961 962 1888 1888 0.05850965656793505 ASQFRKDKIWL 11 Unmodified _ASQFRKDKIWL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS UPN46_class_I_Rep_3 1 464.5979309082031 3 464.597983 1390.77212 NaN NaN NaN NaN NaN NaN NaN 59.158 1 59.158 58.658 59.658 0 0 0 0 0.38417 1 13060 13060 1.0136 0 1 1530 2000 962 963 1889 1889 0.0923641465124092 ASRLATWGL 9 Unmodified _ASRLATWGL_ 0 0 0 REV__nc|ENSG00000223802|P27544-2|CERS1 REV__nc|ENSG00000223802|P27544-2|CERS1 MSMS UPN46_class_I_Rep_3 1 487.7730407714844 2 487.774534 973.534515 NaN NaN NaN NaN NaN NaN NaN 18.024 1 18.024 17.524 18.524 0 0 0 0 0.38916 1 1509 1509 3.2813 0.28607 1 + 1531 21285 963 964 1890 1890 0.04668893508653582 ASRPPVTLR 9 Unmodified _ASRPPVTLR_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000548190.1_1_12:53849722-53854210:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN46_class_I_Rep_3 1 498.80108642578125 2 498.801083 995.587613 0.032407 1.6165E-05 0.0092245 4.6012E-06 0.041632 2.0766E-05 498.80101549175623 29.272 0.69331 29.272 29.01 29.703 0 92 62 2 0 0 0 0.31677 2 4645 4603;4645 12.873 2.7987 1 125690 1532 4424;5347 964 965 1891;1892 1892 0.08964271291324621 ASRSWVDPKI 10 Unmodified _ASRSWVDPKI_ 0 0 0 MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|44|2|anti-sense MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|44|2|anti-sense MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|44|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 580.7989501953125 2 579.81693 1157.61931 0.051589 2.9912E-05 -0.20296 -0.00011768 -0.15137 -8.7769E-05 579.8168103900558 43.692 0.66215 47.387 47.098 47.76 3.6951 65 39 2 0 0 0 0.56374 1 9000 9000 1.1933 0 1 86182 1533 16035 965 966 1893 1893 0.0468021925460107 ASSAEAGHSTA 11 Unmodified _ASSAEAGHSTA_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MSMS UPN46_class_I_Rep_3 1 494.2846984863281 2 494.720153 987.425752 NaN NaN NaN NaN NaN NaN NaN 82.019 1 82.019 81.519 82.519 0 0 0 0 0.38417 1 19404 19404 1.1933 0.39971 1 + 1534 20726 966 967 1894 1894 -0.06846362252292693 ASSKLLLIFIF 11 Unmodified _ASSKLLLIFIF_ 0 0 0 Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|92|1|anti-sense Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|92|1|anti-sense Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|92|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3872680664062 2 626.389199 1250.76385 0.49473 0.0003099 -1.3952 -0.00087393 -0.90046 -0.00056404 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.61292 1 24507 24507 4.897 0 1 107270000 1535 33195 967 968 1895 1895 0.14849467681892747 ASSKLLLIFIF 11 Unmodified _ASSKLLLIFIF_ 0 0 0 Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|92|1|anti-sense Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|92|1|anti-sense Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|92|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3887329101562 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.5 1 107.25 106.75 107.75 3.7434 0 0 0 0.38417 1 24446 24446 4.897 0 1 1536 33195 967 968 1896 1896 0.14849467681892747 ASSVLQYGY 9 Unmodified _ASSVLQYGY_ 0 0 0 nc|ENSG00000157800|Q8NCC5-3|SLC37A3;ENST00000473707.5_1_7:140051761-140069464:-|nuORF;ENST00000464865.5_1_7:140051761-140082350:-|nuORF;nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 MULTI-MSMS UPN47_class_I_Rep_1 2 494.7434387207031 2 494.242732 986.470912 -0.23296 -0.00011514 -0.3505 -0.00017323 -0.58346 -0.00028837 494.24245564370386 41.265 0.49586 44.937 44.747 45.243 3.6719 59 35 2 0 0 0 0.43153 1 8317 8317 6.2058 0 1 82924 1537 16718 968 969 1897 1897 -0.02286511719103146 ASTLKDANF 9 Unmodified _ASTLKDANF_ 0 0 0 REV__ENSG00000105851|ENST00000496166|PIK3CG REV__ENSG00000105851|ENST00000496166|PIK3CG MULTI-MSMS UPN46_class_I_Rep_3 1 483.74755859375 2 483.748182 965.481811 0.004835 2.3389E-06 -0.19327 -9.3495E-05 -0.18844 -9.1156E-05 483.74807329901614 29.456 0.4944 29.456 29.251 29.745 0 76 42 2 0 0 0 0.42249 1 4622 4622 6.7232 1.4925 1 110380 + 1538 18307 969 970 1898 1898 -0.002311093448156498 ASVDKVLEL 9 Unmodified _ASVDKVLEL_ 0 0 0 nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL nc|ENSG00000152795|O14979-3|HNRNPDL nc|ENSG00000152795|O14979-3|HNRNPDL MULTI-MSMS UPN48_class_I_Rep_1 5 487.28179931640625 2 487.281857 972.549162 0.16523 8.0513E-05 0.035512 1.7304E-05 0.20074 9.7817E-05 487.2817381772057 52.715 0.90198 56.234 55.871 56.773 3.5192 167 70 3 0 0 0 0.014369 6 10982 10908;10944;10982;11020;11064;11108 67.081 19.486 1 890060 1539 3632 970 971 1899;1900;1901;1902;1903;1904 1901 0.061789208661252815 ASVDKVLEL 9 Unmodified _ASVDKVLEL_ 0 0 0 nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL nc|ENSG00000152795|O14979-3|HNRNPDL nc|ENSG00000152795|O14979-3|HNRNPDL MULTI-MSMS UPN48_class_I_Rep_2 6 487.28192138671875 2 487.281857 972.549162 0.29791 0.00014517 -0.10201 -4.9706E-05 0.1959 9.5459E-05 487.2816981954027 52.717 0.8786 56.327 55.867 56.746 3.6098 145 61 3 0 0 0 0.0070648 6 10940 10862;10899;10940;10978;11017;11061 96.936 29.097 1 857400 1540 3632 970 971 1905;1906;1907;1908;1909;1910 1907 0.061789208661252815 ASVDKVLEL 9 Unmodified _ASVDKVLEL_ 0 0 0 nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL nc|ENSG00000152795|O14979-3|HNRNPDL nc|ENSG00000152795|O14979-3|HNRNPDL MULTI-MSMS UPN48_class_I_Rep_3 7 487.2818298339844 2 487.281857 972.549162 0.099117 4.8298E-05 0.087967 4.2865E-05 0.18708 9.1163E-05 487.281779197832 52.702 0.77255 56.3 55.932 56.705 3.5979 137 55 3 0 0 0 0.0055879 5 10897 10816;10855;10897;10936;10980 80.676 21.997 1 934850 1541 3632 970 971 1911;1912;1913;1914;1915 1913 0.061789208661252815 ASVIERRL 8 Unmodified _ASVIERRL_ 0 0 0 REV__ENSG00000154814|ENST00000285083|OXNAD1 REV__ENSG00000154814|ENST00000285083|OXNAD1 MULTI-SECPEP UPN47_class_I_Rep_1 2 472.2886657714844 2 472.287808 942.561064 0.22889 0.0001081 0.43681 0.0002063 0.6657 0.0003144 472.2885447467336 108.22 0.56145 111.85 111.57 112.13 3.6355 107 50 3 0 0 0 0.72333 1 26524 26524 14.838 0 1 1802300 + 1542 19748 971 972 1916 1916 0.08748582400005489 ASVIERRL 8 Unmodified _ASVIERRL_ 0 0 0 REV__ENSG00000154814|ENST00000285083|OXNAD1 REV__ENSG00000154814|ENST00000285083|OXNAD1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 472.287808 942.561064 0.27989 0.00013219 0.10583 4.9982E-05 0.38572 0.00018217 472.2882187458346 108.26 0.56049 111.79 111.49 112.05 3.5333 -0.088127 -0.00016 NaN 14.838 94 58 3 NaN NaN NaN NaN 0 NaN NaN 0 1908000 + 1543 19748 971 972 0.08748582400005489 ASVIERRL 8 Unmodified _ASVIERRL_ 0 0 0 REV__ENSG00000154814|ENST00000285083|OXNAD1 REV__ENSG00000154814|ENST00000285083|OXNAD1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 472.287808 942.561064 0.2124 0.00010031 0.51007 0.0002409 0.72247 0.00034122 472.28806891378696 108.31 0.41965 111.98 111.72 112.14 3.6746 0.10019 0.00022184 NaN 14.838 68 47 2 NaN NaN NaN NaN 0 NaN NaN 0 2670200 + 1544 19748 971 972 0.08748582400005489 ASVNAISLTS 10 Unmodified _ASVNAISLTS_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MULTI-MSMS UPN47_class_I_Rep_2 3 481.7618408203125 2 481.761289 961.508025 -0.20345 -9.8013E-05 1.1069 0.00053327 0.90346 0.00043525 481.76189836903484 13.862 0.19144 17.249 17.123 17.314 3.3871 33 22 2 0 0 0 0.56354 1 417 417 1.3295 0.13619 1 29047 1545 908 972 973 1917 1917 0.025731598266588662 ASVNAISLTS 10 Unmodified _ASVNAISLTS_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 481.761289 961.508025 -0.37751 -0.00018187 1.3335 0.00064245 0.95603 0.00046058 481.7619683140652 13.756 0.18851 17.213 17.114 17.302 3.457 -0.020072 -7.7837E-05 NaN 1.3295 39 22 2 NaN NaN NaN NaN 0 NaN NaN 0 47162 1546 908 972 973 0.025731598266588662 ASVNAISLTS 10 Unmodified _ASVNAISLTS_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 481.761289 961.508025 -0.77115 -0.00037151 1.9107 0.00092051 1.1396 0.000549 481.76223572316263 13.868 0.20226 17.237 17.147 17.349 3.3697 0.0040181 0.00047828 NaN 1.3295 27 22 2 NaN NaN NaN NaN 0 NaN NaN 0 29909 1547 908 972 973 0.025731598266588662 ASVRRLTP 8 Unmodified _ASVRRLTP_ 0 0 0 ENST00000459642.1_1_7:44184737-44185442:-|nuORF;nc|ENSG00000106633|P35557-3|GCK;ENSG00000106633|ENST00000403799|GCK;nc|ENSG00000106633|P35557-2|GCK ENST00000459642.1_1_7:44184737-44185442:-|nuORF ENST00000459642.1_1_7:44184737-44185442:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 450.26251220703125 2 450.274701 898.534849 0.18073 8.1379E-05 -0.12776 -5.7526E-05 0.052974 2.3853E-05 450.27475056689934 108.96 0.061874 112.57 112.51 112.57 3.6046 8 6 2 0 0 0 0.72333 1 26832 26832 4.3292 1.7518 1 268990 1548 1797 973 974 1918 1918 0.08152313228504227 ASVVHSLAGA 10 Unmodified _ASVVHSLAGA_ 0 0 0 REV__MER77B_dup422|chr5:170076850-170077533:-|1.5940265766870545|0.0439922179724895|5.18|151.0|22|3|sense REV__MER77B_dup422|chr5:170076850-170077533:-|1.5940265766870545|0.0439922179724895|5.18|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 456.3429260253906 2 456.250892 910.48723 NaN NaN NaN NaN NaN NaN NaN 58.011 1 58.011 57.511 58.511 0 0 0 0 0.53105 1 12745 12745 3.5965 0 1 + 1549 31562 974 975 1919 1919 0.02840614237675254 ASVYFFFQY 9 Unmodified _ASVYFFFQY_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|118|2|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_3 4 586.2761840820312 2 586.276575 1170.5386 NaN NaN NaN NaN NaN NaN NaN 48.266 1 51.506 51.006 52.006 3.2405 0 0 0 0.39518 1 10478 10478 1.8442 0.19162 1 + 1550 28018 975 976 1920 1920 -0.03985061788284838 ASWPEPIF 8 Unmodified _ASWPEPIF_ 0 0 0 REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF MSMS UPN47_class_I_Rep_2 3 473.7370300292969 2 473.737086 945.459619 NaN NaN NaN NaN NaN NaN NaN 105.55 1 109.09 108.59 109.59 3.5327 0 0 0 0.39624 1 25598 25598 9.3474 1.4373 1 + 1551 19786 976 977 1921 1921 -0.015292890225850897 ASWPEPIF 8 Unmodified _ASWPEPIF_ 0 0 0 REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF MSMS UPN48_class_I_Rep_2 6 473.7364196777344 2 473.737086 945.459619 NaN NaN NaN NaN NaN NaN NaN 105.35 1 109.04 108.54 109.54 3.6901 0 0 0 0.39624 1 24919 24919 9.3474 2.6243 1 + 1552 19786 976 977 1922 1922 -0.015292890225850897 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN47_class_I_Rep_3 4 472.7281799316406 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 106.27 1 109.81 109.31 110.31 3.5367 0 0 0 0.40404 1 25985 25985 5.2307 0 1 1553 6665 977 978 1923 1923 -0.030015755396334498 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.727783203125 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.67 1 109.29 108.79 109.79 3.6277 0 0 0 0.40404 1 25456 25456 5.2307 0 1 1554 6665 977 978 1924 1924 -0.030015755396334498 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.72821044921875 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.59 1 109.28 108.78 109.78 3.6901 0 0 0 0.40404 1 24978 24978 5.2307 0 1 1555 6665 977 978 1925 1925 -0.030015755396334498 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.7279968261719 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.73 1 109.41 108.91 109.91 3.6834 0 0 0 0.40404 1 25010 25010 5.2307 0 1 1556 6665 977 978 1926 1926 -0.030015755396334498 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.72857666015625 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.48 1 109.18 108.68 109.68 3.702 0 0 0 0.40404 1 24891 24891 5.2307 0 1 1557 6665 977 978 1927 1927 -0.030015755396334498 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.72784423828125 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.61 1 109.31 108.81 109.81 3.702 0 0 0 0.40404 1 24922 24922 5.2307 0 1 1558 6665 977 978 1928 1928 -0.030015755396334498 ASWSAFYL 8 Unmodified _ASWSAFYL_ 0 0 0 ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.7284240722656 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.75 1 109.45 108.95 109.95 3.702 0 0 0 0.40404 1 24954 24954 5.2307 0 1 1559 6665 977 978 1929 1929 -0.030015755396334498 ASYALVFYF 9 Unmodified _ASYALVFYF_ 0 0 0 REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.772705078125 2 540.773668 1079.53278 0.32682 0.00017674 -1.1766 -0.00063629 -0.84982 -0.00045956 540.7729742212588 52.887 0.55524 56.446 56.157 56.712 3.5585 42 30 2 0 0 0 0.32219 2 11802 11802;11844 12.532 1.7076 1 104920 + 1560 28192 978 979 1930;1931 1930 -0.0038016029996015277 ASYALVFYF 9 Unmodified _ASYALVFYF_ 0 0 0 REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.7735595703125 2 540.773668 1079.53278 0.47275 0.00025565 -1.2924 -0.00069888 -0.81963 -0.00044323 540.773021755028 53.005 0.48161 56.331 56.198 56.679 3.3266 37 27 2 0 0 0 0.32219 2 11863 11863;11954 12.532 1.7076 1 90179 + 1561 28192 978 979 1932;1933 1932 -0.0038016029996015277 ASYALVFYF 9 Unmodified _ASYALVFYF_ 0 0 0 REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_3 4 540.7730712890625 2 540.773668 1079.53278 NaN NaN NaN NaN NaN NaN NaN 53.289 1 56.484 55.984 56.984 3.1948 0 0 0 0.26661 1 12009 12009 12.532 1.7076 1 + 1562 28192 978 979 1934 1934 -0.0038016029996015277 ASYALVFYF 9 Unmodified _ASYALVFYF_ 0 0 0 REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_3 4 540.7726440429688 2 540.773668 1079.53278 NaN NaN NaN NaN NaN NaN NaN 53.491 1 56.686 56.186 57.186 3.1948 0 0 0 0.26661 1 12071 12071 12.532 1.7076 1 + 1563 28192 978 979 1935 1935 -0.0038016029996015277 ASYALVFYF 9 Unmodified _ASYALVFYF_ 0 0 0 REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|58|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 540.773668 1079.53278 0.32682 0.00017674 -1.1766 -0.00063629 -0.84982 -0.00045956 540.7729742212588 52.887 0.55524 56.446 56.157 56.712 3.5585 0.057179 5.2507E-05 NaN 12.532 42 30 2 NaN NaN NaN NaN 0 NaN NaN 0 104920 + 1564 28192 978 979 -0.0038016029996015277 ASYKTALIK 9 Unmodified _ASYKTALIK_ 0 0 0 Kanga1c_dup47|chr1:184931300-184931906:+|1.1740433285785317|0.0229678554184635|5.68|151.0|39|2|anti-sense Kanga1c_dup47|chr1:184931300-184931906:+|1.1740433285785317|0.0229678554184635|5.68|151.0|39|2|anti-sense Kanga1c_dup47|chr1:184931300-184931906:+|1.1740433285785317|0.0229678554184635|5.68|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_2 6 497.7998046875 2 497.800217 993.585882 NaN NaN NaN NaN NaN NaN NaN 35.688 1 39.376 38.876 39.876 3.6877 0 0 0 0.38073 1 5916 5916 5.2969 0 1 1565 8467 979 980 1936 1936 0.08883217482696182 ASYLYKGTL 9 Unmodified _ASYLYKGTL_ 0 0 0 REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 508.2763977050781 2 508.276575 1014.5386 0.046928 2.3852E-05 -0.018322 -9.3124E-06 0.028606 1.454E-05 508.27645107920006 48.798 0.92003 52.48 52.103 53.023 3.6819 159 63 4 0 0 0 0.033731 3 10547 10547;10588;10630 55.503 2.8946 1 550200 + 1566 18989 980 981 1937;1938;1939 1937 0.03190938211707817 ASYLYKGTL 9 Unmodified _ASYLYKGTL_ 0 0 0 REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 508.3018798828125 2 508.276575 1014.5386 0.046928 2.3852E-05 -0.018322 -9.3124E-06 0.028606 1.454E-05 508.27645107920006 48.798 0.92003 52.48 52.103 53.023 3.6819 159 63 4 0 0 0 0.039766 1 10531 10531 55.503 0.26809 1 550200 + 1567 18989 980 981 1940 1940 0.03190938211707817 ASYLYKGTL 9 Unmodified _ASYLYKGTL_ 0 0 0 REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 508.2764892578125 2 508.276575 1014.5386 0.10517 5.3457E-05 0.062874 3.1958E-05 0.16805 8.5415E-05 508.27648803819704 49.09 0.97618 52.437 52.115 53.091 3.3465 158 65 3 0 0 0 0.033731 2 10678 10678;10798 55.503 2.1996 1 607570 + 1568 18989 980 981 1941;1942 1941 0.03190938211707817 ASYLYKGTL 9 Unmodified _ASYLYKGTL_ 0 0 0 REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 508.276611328125 2 508.276575 1014.5386 0.26131 0.00013282 -0.065653 -3.337E-05 0.19566 9.9449E-05 508.2764619879841 49.245 0.99415 52.48 52.118 53.112 3.2345 148 58 3 0 0 0 0.033731 3 10783 10783;10822;10863 55.503 2.8946 1 558970 + 1569 18989 980 981 1943;1944;1945 1943 0.03190938211707817 ASYLYKGTL 9 Unmodified _ASYLYKGTL_ 0 0 0 REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 508.302001953125 2 508.276575 1014.5386 0.26131 0.00013282 -0.065653 -3.337E-05 0.19566 9.9449E-05 508.2764619879841 49.245 0.99415 52.48 52.118 53.112 3.2345 148 58 3 0 0 0 0.039766 1 10767 10767 55.503 0.26809 1 558970 + 1570 18989 980 981 1946 1946 0.03190938211707817 ASYNVKTAY 9 Unmodified _ASYNVKTAY_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MULTI-SECPEP UPN48_class_I_Rep_2 6 508.21173095703125 2 508.756007 1015.49746 0.31664 0.00016109 0.010499 5.3413E-06 0.32714 0.00016644 508.75601767572255 31.69 0.47878 35.331 35.125 35.603 3.641 58 47 2 0 0 0 0.11198 1 4815 4815 10.8 0 1 108630 1571 837 981 982 1947 1947 -0.009668228277746493 ASYNVKTAY 9 Unmodified _ASYNVKTAY_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MULTI-SECPEP UPN48_class_I_Rep_3 7 508.2120666503906 2 508.756007 1015.49746 0.17517 8.9118E-05 -0.053996 -2.7471E-05 0.12117 6.1647E-05 508.75588701262615 31.523 0.35676 35.224 35.079 35.436 3.7015 70 40 2 0 0 0 0.12139 1 4702 4702 7.1017 3.5052 1 83635 1572 837 981 982 1948 1948 -0.009668228277746493 ASYNVKTAY 9 Unmodified _ASYNVKTAY_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MULTI-MATCH UPN46_class_I_Rep_3 1 2 508.756007 1015.49746 0.16728 8.5103E-05 1.2386 0.00063015 1.4059 0.00071525 508.7565807568191 35.031 0.064171 35.031 34.976 35.04 0 -0.15219 0.0012981 NaN 7.1017 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48680 1573 837 981 982 -0.009668228277746493 ASYTKALKL 9 Unmodified _ASYTKALKL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS UPN48_class_I_Rep_1 5 497.8008728027344 2 497.800217 993.585882 NaN NaN NaN NaN NaN NaN NaN 35.928 1 39.438 38.938 39.938 3.5101 0 0 0 0.28608 1 5940 5940 11.495 5.2889 1 1574 3538 982 983 1949 1949 0.0888321748270755 ATAGIIGVNR 10 Unmodified _ATAGIIGVNR_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MSMS UPN48_class_I_Rep_1 5 486.28515625 2 486.285266 970.555979 NaN NaN NaN NaN NaN NaN NaN 35.465 1 38.975 38.475 39.475 3.5101 0 0 0 0.53105 1 5804 5804 38.176 9.6887 1 1575 3215 983 984 1950 1950 0.06952278537380607 ATAGIIGVNR 10 Unmodified _ATAGIIGVNR_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MSMS UPN48_class_I_Rep_1 5 486.2849426269531 2 486.285266 970.555979 NaN NaN NaN NaN NaN NaN NaN 35.607 1 39.117 38.617 39.617 3.5101 0 0 0 0.53105 1 5844 5844 26.268 6.9062 1 1576 3215 983 984 1951 1951 0.06952278537380607 ATAGIIGVNR 10 Unmodified _ATAGIIGVNR_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MSMS UPN48_class_I_Rep_2 6 486.2855224609375 2 486.285266 970.555979 NaN NaN NaN NaN NaN NaN NaN 35.256 1 38.93 38.43 39.43 3.6735 0 0 0 0.53105 1 5788 5788 17.113 1.2657 1 1577 3215 983 984 1952 1952 0.06952278537380607 ATAGIIGVNR 10 Unmodified _ATAGIIGVNR_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MSMS UPN48_class_I_Rep_2 6 486.2836608886719 2 486.285266 970.555979 NaN NaN NaN NaN NaN NaN NaN 35.315 1 38.988 38.488 39.488 3.6735 0 0 0 0.53105 1 5804 5804 17.113 1.8644 1 1578 3215 983 984 1953 1953 0.06952278537380607 ATAGIIGVNR 10 Unmodified _ATAGIIGVNR_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENST00000472129.3_1_17:57725612-57733400:+|nuORF ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN48_class_I_Rep_3 7 486.7906494140625 2 486.285266 970.555979 0.13854 6.7368E-05 2.1758 0.0010581 2.3144 0.0011254 486.285078120479 35.257 0.53548 38.929 38.75 39.286 3.6721 86 55 2 0 0 0 0.31818 3 5730 5721;5730;5754 27.629 7.2143 1 78489 1579 3215 983 984 1954;1955;1956 1955 0.06952278537380607 ATDFDVLSY 9 Unmodified _ATDFDVLSY_ 0 0 0 ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L ENST00000463347.5_1_3:45730948-45748420:+|nuORF ENST00000463347.5_1_3:45730948-45748420:+|nuORF MSMS UPN47_class_I_Rep_1 2 515.7403564453125 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 70.381 1 73.752 73.252 74.252 3.3713 0 0 0 0.10315 1 17101 17101 24.021 2.2739 1 1580 5576 984 985 1957 1957 -0.048062353015666304 ATDFDVLSY 9 Unmodified _ATDFDVLSY_ 0 0 0 ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L ENST00000463347.5_1_3:45730948-45748420:+|nuORF ENST00000463347.5_1_3:45730948-45748420:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 515.738525390625 2 515.740022 1029.46549 0.05693 2.9361E-05 -0.37146 -0.00019158 -0.31453 -0.00016222 515.7398080236774 70.39 0.38669 73.673 73.553 73.94 3.2828 52 37 2 0 0 0 0.097406 2 17162 17162;17196 34.402 5.9149 1 102650 1581 5576 984 985 1958;1959 1958 -0.048062353015666304 ATDFDVLSY 9 Unmodified _ATDFDVLSY_ 0 0 0 ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L ENST00000463347.5_1_3:45730948-45748420:+|nuORF ENST00000463347.5_1_3:45730948-45748420:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 515.7401733398438 2 515.740022 1029.46549 0.28517 0.00014707 -0.21355 -0.00011014 0.071617 3.6936E-05 515.73974210836 70.48 0.606 73.691 73.372 73.978 3.2113 80 53 2 0 0 0 0.097406 3 17229 17192;17229;17271 34.402 5.9149 1 121000 1582 5576 984 985 1960;1961;1962 1961 -0.048062353015666304 ATDFKFAMY 9 Oxidation (M) _ATDFKFAM(Oxidation (M))Y_ ATDFKFAM(1)Y ATDFKFAM(65)Y 0 0 1 ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2 ENST00000536795.1_1_12:4387934-4398180:+|nuORF ENST00000536795.1_1_12:4387934-4398180:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 555.2523803710938 2 555.252243 1108.48993 0.27237 0.00015123 -0.10316 -5.728E-05 0.16921 9.3954E-05 555.2521004154432 50.457 1.1906 54.085 53.677 54.868 3.6285 131 55 3 0 0 0 0.016816 3 11025 11025;11070;11115 65.474 40.074 1 446100 1583 2267 985 986 1963;1964;1965 1963 76 -0.05997298419697472 ATDFKFAMY 9 Oxidation (M) _ATDFKFAM(Oxidation (M))Y_ ATDFKFAM(1)Y ATDFKFAM(65)Y 0 0 1 ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2 ENST00000536795.1_1_12:4387934-4398180:+|nuORF ENST00000536795.1_1_12:4387934-4398180:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 555.2523193359375 2 555.252243 1108.48993 0.47186 0.000262 -0.26942 -0.0001496 0.20244 0.0001124 555.2520156047567 50.739 1.101 54.077 53.729 54.83 3.3386 149 57 4 0 0 0 0.016816 2 11193 11147;11193 65.474 40.074 1 510190 1584 2267 985 986 1966;1967 1967 76 -0.05997298419697472 ATDFKFAMY 9 Oxidation (M) _ATDFKFAM(Oxidation (M))Y_ ATDFKFAM(1)Y ATDFKFAM(74)Y 0 0 1 ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2 ENST00000536795.1_1_12:4387934-4398180:+|nuORF ENST00000536795.1_1_12:4387934-4398180:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 555.252197265625 2 555.252243 1108.48993 0.52952 0.00029402 -0.38476 -0.00021364 0.14476 8.0378E-05 555.251894206881 50.917 1.2254 54.133 53.713 54.938 3.2163 150 64 3 0 0 0 0.0065234 4 11307 11226;11265;11307;11348 74.2 48.8 1 543250 1585 2267 985 986 1968;1969;1970;1971 1970 76 -0.05997298419697472 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(82)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_1 2 549.7263793945312 2 549.726058 1097.43756 0.38895 0.00021382 0.17835 9.8043E-05 0.5673 0.00031186 549.7259856649898 55.952 1.0268 59.43 59.011 60.038 3.4785 151 58 4 0 0 0 0.0058313 4 12704 12662;12704;12743;12800 100.37 62.22 1 881970 1586 2019 986 987 1972;1973;1974;1975 1973 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(48)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MSMS UPN47_class_I_Rep_1 2 549.7257080078125 2 549.726058 1097.43756 NaN NaN NaN NaN NaN NaN NaN 59.408 1 62.806 62.306 63.306 3.3982 0 0 0 0.027434 1 13793 13793 48.346 18.121 1 1587 2019 986 987 1976 1976 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(51)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MSMS UPN47_class_I_Rep_1 2 549.725830078125 2 549.726058 1097.43756 NaN NaN NaN NaN NaN NaN NaN 60.235 1 63.633 63.133 64.133 3.3982 0 0 0 0.025567 1 14045 14045 50.855 12.704 1 1588 2019 986 987 1977 1977 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(51)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MSMS UPN47_class_I_Rep_1 2 549.7260131835938 2 549.726058 1097.43756 NaN NaN NaN NaN NaN NaN NaN 60.363 1 63.761 63.261 64.261 3.3982 0 0 0 0.025567 1 14084 14084 50.855 12.704 1 1589 2019 986 987 1978 1978 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(42)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MSMS UPN47_class_I_Rep_1 2 549.72607421875 2 549.726058 1097.43756 NaN NaN NaN NaN NaN NaN NaN 60.498 1 63.88 63.38 64.38 3.3815 0 0 0 0.036183 1 14123 14123 42.095 11.87 1 1590 2019 986 987 1979 1979 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(93)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_2 3 549.7261962890625 2 549.726058 1097.43756 0.50249 0.00027623 -0.075004 -4.1232E-05 0.42749 0.000235 549.7258969321002 56.117 1.0229 59.418 59.042 60.065 3.3009 156 61 4 0 0 0 0.005134 4 12835 12755;12795;12835;12872 104.8 66.648 1 833310 1591 2019 986 987 1980;1981;1982;1983 1982 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(51)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_2 3 549.725830078125 2 549.726058 1097.43756 0.46569 0.000256 -0.79771 -0.00043852 -0.33201 -0.00018252 549.7253567954715 60.726 1.4596 63.991 63.275 64.735 3.2654 171 116 3 0 0 0 0.045397 2 14162 14162;14198 50.855 12.704 1 232120 1592 2019 986 987 1984;1985 1984 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(42)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MSMS UPN47_class_I_Rep_2 3 549.7260131835938 2 549.726058 1097.43756 NaN NaN NaN NaN NaN NaN NaN 59.58 1 62.853 62.353 63.353 3.2731 0 0 0 0.036183 1 13879 13879 42.095 11.87 1 1593 2019 986 987 1986 1986 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(42)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-SECPEP UPN47_class_I_Rep_2 3 549.79638671875 2 549.726058 1097.43756 0.48339 0.00026573 -0.22868 -0.00012571 0.25471 0.00014002 549.7256539247718 59.879 0.65628 63.153 62.649 63.306 3.2731 54 41 2 0 0 0 0.044279 1 13825 13825 42.095 11.87 1 119290 1594 2019 986 987 1987 1987 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(93)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_3 4 549.7262573242188 2 549.726058 1097.43756 0.39307 0.00021608 0.085665 4.7092E-05 0.47873 0.00026317 549.7259699712397 56.218 0.92988 59.39 59.03 59.959 3.1721 176 59 4 0 0 0 0.005134 4 12894 12852;12894;12930;12970 92.822 54.671 1 885690 1595 2019 986 987 1988;1989;1990;1991 1989 65 -0.10725881553321415 ATDYTFAMY 9 Oxidation (M) _ATDYTFAM(Oxidation (M))Y_ ATDYTFAM(1)Y ATDYTFAM(51)Y 0 0 1 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000513956.5_1_6:41904284-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_3 4 549.7260131835938 2 549.726058 1097.43756 0.3631 0.0001996 -0.56676 -0.00031156 -0.20366 -0.00011196 549.7255712645535 60.714 2.7205 63.879 61.834 64.554 3.1651 286 198 3 0 0 0 0.045397 2 14236 13938;14236 50.855 12.704 1 210100 1596 2019 986 987 1992;1993 1993 65 -0.10725881553321415 ATEDRYVDPY 10 Unmodified _ATEDRYVDPY_ 0 0 0 REV__ENSG00000085377|ENST00000652536|PREP REV__ENSG00000085377|ENST00000652536|PREP MULTI-MSMS UPN47_class_I_Rep_3 4 614.7765502929688 2 614.777667 1227.54078 -0.056436 -3.4696E-05 -0.2474 -0.00015209 -0.30383 -0.00018679 614.7773579564085 38.149 0.64942 41.391 41.101 41.75 3.2414 65 46 2 0 0 0 0.55148 3 7430 7381;7391;7430 5.2969 0.96765 1 102440 + 1597 17951 987 988 1994;1995;1996 1996 -0.06388677841141543 ATEHPRLYL 9 Unmodified _ATEHPRLYL_ 0 0 0 REV__ENST00000489180.6_1_1:5923327-5936049:-|nuORF REV__ENST00000489180.6_1_1:5923327-5936049:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 550.2180786132812 2 550.298373 1098.58219 0.47784 0.00026295 -1.3485 -0.00074206 -0.87063 -0.0004791 550.2986310001854 34.004 0.075336 37.665 37.617 37.692 3.6607 11 7 2 0 0 0 0.12281 1 5435 5435 4.3292 0 1 42555 + 1598 18984 988 989 1997 1997 0.03684547708826358 ATEHPRLYL 9 Unmodified _ATEHPRLYL_ 0 0 0 REV__ENST00000489180.6_1_1:5923327-5936049:-|nuORF REV__ENST00000489180.6_1_1:5923327-5936049:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 550.298373 1098.58219 0.31917 0.00017564 0.20736 0.00011411 0.52653 0.00028975 550.298680945944 34.049 0.31286 37.729 37.632 37.945 3.6797 -0.021178 0.00029248 NaN 4.3292 54 34 2 NaN NaN NaN NaN 0 NaN NaN 0 95847 + 1599 18984 988 989 0.03684547708826358 ATEKHLQKY 9 Unmodified _ATEKHLQKY_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MULTI-MSMS UPN47_class_I_Rep_1 2 559.3026733398438 2 559.303655 1116.59276 -0.11344 -6.3448E-05 -0.28874 -0.00016149 -0.40218 -0.00022494 559.3033395596192 13.575 0.28579 17.032 16.931 17.217 3.457 77 34 4 0 0 0 0.32682 2 383 354;383 12.241 5.5026 1 111690 1600 1925 989 990 1998;1999 1999 0.03912530363277256 ATEKHLQKY 9 Unmodified _ATEKHLQKY_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MSMS UPN47_class_I_Rep_2 3 559.3033447265625 2 559.303655 1116.59276 NaN NaN NaN NaN NaN NaN NaN 13.734 1 17.122 16.622 17.622 3.388 0 0 0 0.37692 1 399 399 6.2058 1.8765 1 1601 1925 989 990 2000 2000 0.03912530363277256 ATEKHLQKY 9 Unmodified _ATEKHLQKY_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MSMS UPN47_class_I_Rep_3 4 559.302978515625 2 559.303655 1116.59276 NaN NaN NaN NaN NaN NaN NaN 13.662 1 17.035 16.535 17.535 3.3734 0 0 0 0.27207 1 363 363 12.241 3.4953 1 1602 1925 989 990 2001 2001 0.03912530363277256 ATEKHLQKY 9 Unmodified _ATEKHLQKY_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MSMS UPN47_class_I_Rep_3 4 559.3035888671875 2 559.303655 1116.59276 NaN NaN NaN NaN NaN NaN NaN 13.782 1 17.152 16.652 17.652 3.3697 0 0 0 0.39598 1 391 391 1.6526 0.85899 1 1603 1925 989 990 2002 2002 0.03912530363277256 ATELFHTTY 9 Unmodified _ATELFHTTY_ 0 0 0 REV__L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|80|2|anti-sense REV__L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|80|2|anti-sense MSMS UPN47_class_I_Rep_2 3 541.7630004882812 2 541.761289 1081.50803 NaN NaN NaN NaN NaN NaN NaN 36.209 1 39.62 39.12 40.12 3.4114 0 0 0 0.38478 1 6766 6766 4.3292 0.38484 1 + 1604 28735 990 991 2003 2003 -0.02946840173331111 ATEQKEEEIS 10 Unmodified _ATEQKEEEIS_ 0 0 0 REV__L1ME4c_dup7584|chr16:81491785-81492335:-|1.0319174586842903|0.0237239393404417|5.44|150.0|15|3|sense REV__L1ME4c_dup7584|chr16:81491785-81492335:-|1.0319174586842903|0.0237239393404417|5.44|150.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 582.277587890625 2 582.274958 1162.53536 NaN NaN NaN NaN NaN NaN NaN 50.66 1 54.185 53.685 54.685 3.5246 0 0 0 0.53105 1 10369 10369 2.7352 0.23671 1 + 1605 28323 991 992 2004 2004 -0.03940401423596995 ATESVSLYY 9 Unmodified _ATESVSLYY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN47_class_I_Rep_1 2 516.748291015625 2 516.747847 1031.48114 0.23953 0.00012378 0.40337 0.00020844 0.6429 0.00033222 516.747904264015 55.864 0.60904 59.343 58.902 59.511 3.4785 80 37 3 0 0 0 0.066041 3 12645 12645;12686;12729 42.095 0 1 229050 1606 1030 992 993 2005;2006;2007 2005 -0.03333948784529639 ATESVSLYY 9 Unmodified _ATESVSLYY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN47_class_I_Rep_2 3 516.748046875 2 516.747847 1031.48114 0.15444 7.9808E-05 0.38479 0.00019884 0.53923 0.00027865 516.7479042925304 55.981 0.62887 59.29 58.954 59.583 3.309 86 37 3 0 0 0 0.066041 2 12752 12752;12814 42.095 0 1 204260 1607 1030 992 993 2008;2009 2008 -0.03333948784529639 ATESVSLYY 9 Unmodified _ATESVSLYY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN47_class_I_Rep_3 4 516.7478637695312 2 516.747847 1031.48114 0.24945 0.0001289 0.3655 0.00018887 0.61495 0.00031777 516.7478609235376 56.126 0.71465 59.298 58.941 59.655 3.1721 86 48 2 0 0 0 0.066041 2 12861 12861;12905 42.095 0 1 176410 1608 1030 992 993 2010;2011 2010 -0.03333948784529639 ATESVSLYYY 10 Unmodified _ATESVSLYYY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN47_class_I_Rep_1 2 598.2793579101562 2 598.279512 1194.54447 0.3986 0.00023848 -0.42774 -0.00025591 -0.029135 -1.7431E-05 598.2791037969829 62.944 0.53892 66.303 66.016 66.555 3.3595 69 39 2 0 0 0 0.12939 6 14871 14809;14815;14830;14860;14871;14912 71.134 34.667 1 169210 1609 1030 993 994 2012;2013;2014;2015;2016;2017 2016 -0.04502008067288443 ATESVSLYYY 10 Unmodified _ATESVSLYYY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN47_class_I_Rep_2 3 598.28076171875 2 598.279512 1194.54447 0.42359 0.00025343 -0.45212 -0.0002705 -0.02853 -1.7069E-05 598.2791784281675 63.18 0.71003 66.436 66.108 66.818 3.2558 78 49 2 0 0 0 0.2133 5 14924 14920;14924;14969;15012;15027 46.021 17.848 1 126860 1610 1030 993 994 2018;2019;2020;2021;2022 2019 -0.04502008067288443 ATESVSLYYY 10 Unmodified _ATESVSLYYY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN47_class_I_Rep_3 4 598.281005859375 2 598.279512 1194.54447 0.42023 0.00025141 -0.60917 -0.00036446 -0.18894 -0.00011304 598.2787445334918 63.21 0.73056 66.38 65.905 66.635 3.1698 92 47 3 0 0 0 0.21503 5 14997 14997;15010;15033;15048;15090 43.858 17.103 1 160450 1611 1030 993 994 2023;2024;2025;2026;2027 2023 -0.04502008067288443 ATEYKNEEY 9 Unmodified _ATEYKNEEY_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_1 2 573.7515869140625 2 573.751118 1145.48768 -0.11142 -6.3925E-05 0.36603 0.00021001 0.25461 0.00014609 573.7512963414551 22.089 0.66816 25.764 25.424 26.092 3.6749 104 63 2 0 0 0 0.279 3 2499 2465;2499;2518 15.248 5.0651 1 97020 1612 1248 994 995 2028;2029;2030 2029 -0.0792405562381191 ATEYKNEEY 9 Unmodified _ATEYKNEEY_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_2 3 573.7517700195312 2 573.751118 1145.48768 0.047346 2.7165E-05 0.13748 7.888E-05 0.18483 0.00010605 573.7511150051771 22.351 0.7038 25.775 25.515 26.219 3.4241 116 70 2 0 0 0 0.15547 4 2626 2595;2626;2666;2694 24.991 11.948 1 103450 1613 1248 994 995 2031;2032;2033;2034 2032 -0.0792405562381191 ATEYKNEEY 9 Unmodified _ATEYKNEEY_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_3 4 574.2520141601562 2 573.751118 1145.48768 -0.29999 -0.00017212 0.50554 0.00029006 0.20555 0.00011793 573.7512659434767 22.45 0.70206 25.8 25.388 26.09 3.3503 93 63 2 0 0 0 0.35123 3 2710 2625;2710;2750 10.8 3.1906 1 69530 1614 1248 994 995 2035;2036;2037 2036 -0.0792405562381191 ATFHETFE 8 Unmodified _ATFHETFE_ 0 0 0 REV__nc|ENSG00000075711|Q12959-8|DLG1 REV__nc|ENSG00000075711|Q12959-8|DLG1 MULTI-MSMS UPN47_class_I_Rep_2 3 491.21954345703125 2 491.219257 980.423961 -0.10227 -5.0238E-05 0.038469 1.8897E-05 -0.063802 -3.1341E-05 491.2192091892948 40.784 0.55091 44.156 43.822 44.373 3.3712 77 43 2 0 0 0 0.82752 1 8087 8087 5.2307 0 1 85706 + 1615 17861 995 996 2038 2038 -0.06703371270225489 ATFLVISHY 9 Unmodified _ATFLVISHY_ 0 0 0 ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB ENSG00000155876|ENST00000380527|RRAGA ENSG00000155876|ENST00000380527|RRAGA MSMS UPN48_class_I_Rep_1 5 525.7850341796875 2 525.784567 1049.55458 NaN NaN NaN NaN NaN NaN NaN 59.669 1 63.149 62.649 63.649 3.4801 0 0 0 0.28335 1 13131 13131 11.64 3.7301 1 1616 1244 996 997 2039 2039 0.03178644448621526 ATFLVISHY 9 Unmodified _ATFLVISHY_ 0 0 0 ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB ENSG00000155876|ENST00000380527|RRAGA ENSG00000155876|ENST00000380527|RRAGA MSMS UPN48_class_I_Rep_3 7 525.783447265625 2 525.784567 1049.55458 NaN NaN NaN NaN NaN NaN NaN 59.488 1 63.005 62.505 63.505 3.5169 0 0 0 0.13551 1 12988 12988 20.454 11.86 1 1617 1244 996 997 2040 2040 0.03178644448621526 ATFPDTLTY 9 Unmodified _ATFPDTLTY_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MULTI-MSMS UPN48_class_I_Rep_1 5 514.7504272460938 2 514.75039 1027.48623 0.34844 0.00017936 0.075203 3.8711E-05 0.42364 0.00021807 514.7503279967916 65.003 0.39119 68.457 68.339 68.73 3.4541 45 28 2 0 0 0 0.061943 3 14800 14750;14762;14800 43.858 22.112 1 126590 1618 1371 997 998 2041;2042;2043 2043 -0.02641644921891384 ATFPDTLTY 9 Unmodified _ATFPDTLTY_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN48_class_I_Rep_2 6 514.750732421875 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 64.724 1 68.203 67.703 68.703 3.4792 0 0 0 0.37476 1 14656 14656 6.7232 2.3939 1 1619 1371 997 998 2044 2044 -0.02641644921891384 ATFPDTLTY 9 Unmodified _ATFPDTLTY_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN48_class_I_Rep_2 6 514.750732421875 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 64.863 1 68.342 67.842 68.842 3.4792 0 0 0 2.154E-06 1 14699 14699 68.081 33.978 1 1620 1371 997 998 2045 2045 -0.02641644921891384 ATFPDTLTY 9 Unmodified _ATFPDTLTY_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN48_class_I_Rep_3 7 514.7501831054688 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 64.763 1 68.271 67.771 68.771 3.5083 0 0 0 2.154E-06 1 14582 14582 68.081 33.978 1 1621 1371 997 998 2046 2046 -0.02641644921891384 ATFPDTLTY 9 Unmodified _ATFPDTLTY_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN48_class_I_Rep_3 7 514.7504272460938 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 64.923 1 68.43 67.93 68.93 3.5077 0 0 0 0.0036588 1 14632 14632 58.679 31.795 1 1622 1371 997 998 2047 2047 -0.02641644921891384 ATGKDYITR 9 Unmodified _ATGKDYITR_ 0 0 0 REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|140|3|sense REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|140|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 512.7745361328125 2 512.774731 1023.53491 0.29166 0.00014956 -0.23235 -0.00011914 0.059311 3.0413E-05 512.7744020666447 37.696 0.49448 41.412 41.161 41.655 3.7164 69 50 3 0 0 0 0.43982 1 6450 6450 5.7319 0 1 95634 + 1623 29290 998 999 2048 2048 0.024082684378299746 ATGRKPKRPTS 11 Unmodified _ATGRKPKRPTS_ 0 0 0 REV__HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|56|3|sense REV__HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|56|3|sense MSMS UPN46_class_I_Rep_3 1 400.1811828613281 3 400.238678 1197.6942 NaN NaN NaN NaN NaN NaN NaN 109.68 1 109.68 109.18 110.18 0 0 0 0 0.38417 1 26961 26961 2.6312 0.72486 1 + 1624 23443 999 1000 2049 2049 0.10326401785846429 ATGTALFPTRS 11 Unmodified _ATGTALFPTRS_ 0 0 0 ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12 ENSG00000205277|ENST00000536621|MUC12 ENSG00000205277|ENST00000536621|MUC12 MULTI-SECPEP UPN47_class_I_Rep_2 3 560.7975463867188 2 561.301113 1120.58767 0.38228 0.00021458 -2.9179 -0.0016378 -2.5356 -0.0014233 561.2991008522973 67.339 0.12128 70.603 70.537 70.658 3.2636 11 9 2 0 0 0 22.551 1 16245 16245 4.897 1.3005 1 65655 1625 5555 1000 1001 2050 2050 0.03220226500661738 ATHILLYFE 9 Unmodified _ATHILLYFE_ 0 0 0 REV__L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|54|2|anti-sense REV__L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.787353515625 2 553.797675 1105.5808 NaN NaN NaN NaN NaN NaN NaN 61.787 1 65.047 64.547 65.547 3.2594 0 0 0 0.38478 1 14549 14549 4.3292 0.73274 1 + 1626 27919 1001 1002 2051 2051 0.03222913620084 ATIFHELVY 9 Unmodified _ATIFHELVY_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MSMS UPN48_class_I_Rep_1 5 546.7901000976562 2 546.78985 1091.56515 NaN NaN NaN NaN NaN NaN NaN 61.904 1 65.372 64.872 65.872 3.4678 0 0 0 0.089203 1 13812 13812 26.884 8.7487 1 1627 5015 1002 1003 2052 2052 0.023026271030403223 ATIFHELVY 9 Unmodified _ATIFHELVY_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MSMS UPN48_class_I_Rep_1 5 546.7900390625 2 546.78985 1091.56515 NaN NaN NaN NaN NaN NaN NaN 62.041 1 65.508 65.008 66.008 3.4678 0 0 0 0.089203 1 13854 13854 26.884 9.9414 1 1628 5015 1002 1003 2053 2053 0.023026271030403223 ATIFHELVY 9 Unmodified _ATIFHELVY_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MSMS UPN48_class_I_Rep_1 5 546.790283203125 2 546.78985 1091.56515 NaN NaN NaN NaN NaN NaN NaN 62.167 1 65.635 65.135 66.135 3.4678 0 0 0 0.19137 1 13893 13893 16.942 0 1 1629 5015 1002 1003 2054 2054 0.023026271030403223 ATIFHELVY 9 Unmodified _ATIFHELVY_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS UPN48_class_I_Rep_2 6 546.7899169921875 2 546.78985 1091.56515 0.54089 0.00029576 0.098341 5.3772E-05 0.63924 0.00034953 546.7897430280736 61.94 0.83343 65.414 65.015 65.848 3.4738 180 67 3 0 0 0 0.082592 3 13800 13763;13800;13841 37.974 21.032 1 688760 1630 5015 1002 1003 2055;2056;2057 2056 0.023026271030403223 ATIFHELVY 9 Unmodified _ATIFHELVY_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS UPN48_class_I_Rep_3 7 546.7899780273438 2 546.78985 1091.56515 0.46501 0.00025426 0.15502 8.4762E-05 0.62003 0.00033902 546.7897928160779 61.744 0.9122 65.254 64.839 65.751 3.5104 199 78 4 0 0 0 0.061943 2 13658 13658;13694 43.858 26.916 1 687490 1631 5015 1002 1003 2058;2059 2058 0.023026271030403223 ATIPLRTGTRQ 11 Unmodified _ATIPLRTGTRQ_ 0 0 0 L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|12|1|sense L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|12|1|sense L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 405.2270202636719 3 405.238566 1212.69387 NaN NaN NaN NaN NaN NaN NaN 109.37 1 113.04 112.54 113.54 3.6715 0 0 0 0.38417 1 26032 26032 2.2527 0 1 1632 14020 1003 1004 2060 2060 0.09602982065985088 ATKTVRAKYYL 11 Unmodified _ATKTVRAKYYL_ 0 0 0 REV__L1PA10_dup1619|chr4:48397500-48400388:-|1.6812766330867688|0.0510749619792224|5.04|150.0|73|3|sense REV__L1PA10_dup1619|chr4:48397500-48400388:-|1.6812766330867688|0.0510749619792224|5.04|150.0|73|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 438.0965576171875 3 438.590717 1312.75032 -0.71391 -0.00031311 4.3066 0.0018888 3.5927 0.0015757 438.59282150988196 24.702 0.052078 28.185 28.163 28.215 3.483 5 3 2 0 0 0 22.551 1 3325 3325 1.4551 0.67859 1 38722 + 1633 28939 1004 1005 2061 2061 0.10645609902667275 ATLEQAHQAL 10 Unmodified _ATLEQAHQAL_ 0 0 0 ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 MULTI-MSMS UPN47_class_I_Rep_1 2 541.2850952148438 2 541.285463 1080.55637 -0.09406 -5.0913E-05 -0.50268 -0.00027209 -0.59674 -0.00032301 541.2850747552363 14.899 0.38589 18.374 18.234 18.619 3.475 94 43 3 0 0 0 0.53004 1 684 684 8.1555 0.54658 1 118190 1634 4084 1005 1006 2062 2062 0.01931653466544958 ATLIFYIHY 9 Unmodified _ATLIFYIHY_ 0 0 0 REV__ENSG00000169836|ENST00000304883|TACR3 REV__ENSG00000169836|ENST00000304883|TACR3 MSMS UPN48_class_I_Rep_3 7 570.8056640625 2 570.808042 1139.60153 NaN NaN NaN NaN NaN NaN NaN 55.548 1 59.103 58.603 59.603 3.5554 0 0 0 0.38639 1 11786 11786 3.9444 0.3479 1 + 1635 20329 1006 1007 2063 2063 0.03731503999756569 ATLNVSTTR 9 Unmodified _ATLNVSTTR_ 0 0 0 ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10 ENST00000460846.1_1_13:111557570-111567134:-|nuORF ENST00000460846.1_1_13:111557570-111567134:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 481.7668762207031 2 481.766906 961.519259 0.011321 5.4541E-06 -0.02162 -1.0416E-05 -0.010299 -4.9618E-06 481.7668510471816 30.033 0.58175 30.033 29.745 30.327 0 114 49 3 0 0 0 0.18874 3 4824 4810;4824;4859 21.799 11.649 1 204990 1636 1313 1007 1008 2064;2065;2066 2065 0.03695981920793656 ATLPTIFD 8 Unmodified _ATLPTIFD_ 0 0 0 REV__L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|167|3|sense REV__L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|167|3|sense MSMS UPN47_class_I_Rep_3 4 439.2361145019531 2 439.236919 876.459284 NaN NaN NaN NaN NaN NaN NaN 95.011 1 98.421 97.921 98.921 3.4095 0 0 0 0.4044 1 23629 23629 4.756 2.4533 1 + 1637 30359 1008 1009 2067 2067 0.016112912575636074 ATLQLSLKL 9 Unmodified _ATLQLSLKL_ 0 0 0 IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5 IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 493.8158264160156 2 493.815867 985.617182 0.27442 0.00013551 0.8032 0.00039663 1.0776 0.00053214 493.81574775364123 64.892 0.41318 68.346 68.12 68.533 3.4541 47 33 2 0 0 0 0.33908 1 14739 14739 11.495 1.4208 1 131720 1638 1002 1009 1010 2068 2068 0.12379790516808953 ATLQLSLKL 9 Unmodified _ATLQLSLKL_ 0 0 0 IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5 IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 493.8160400390625 2 493.815867 985.617182 0.30599 0.0001511 1.148 0.00056689 1.454 0.00071799 493.81567582370735 64.75 0.50391 68.229 67.945 68.449 3.4792 49 36 2 0 0 0 0.24411 2 14671 14671;14681 17.443 4.4002 1 119130 1639 1002 1009 1010 2069;2070 2069 0.12379790516808953 ATLTRPLAL 9 Unmodified _ATLTRPLAL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS UPN48_class_I_Rep_1 5 478.3005065917969 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 50.366 1 53.89 53.39 54.39 3.5246 0 0 0 0.3824 1 10278 10278 4.897 1.6157 1 1640 1199 1010 1011 2071 2071 0.10710637202555517 ATNILTATR 9 Unmodified _ATNILTATR_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS UPN46_class_I_Rep_3 1 480.7773132324219 2 480.777274 959.539994 0.15918 7.6529E-05 -0.081542 -3.9204E-05 0.077635 3.7325E-05 480.77713060996206 36.823 0.67995 36.823 36.529 37.209 0 139 63 3 0 0 0 0.0052074 4 6839 6802;6839;6875;6910 146.68 66.004 1 370790 1641 2074 1011 1012 2072;2073;2074;2075 2073 0.05860572300480271 ATNILTATR 9 Unmodified _ATNILTATR_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN46_class_I_Rep_3 1 480.7773132324219 2 480.777274 959.539994 NaN NaN NaN NaN NaN NaN NaN 37.228 1 37.228 36.728 37.728 0 0 0 0 0.28565 1 6979 6979 11.518 1.444 1 1642 2074 1011 1012 2076 2076 0.05860572300480271 ATPDLFWS 8 Unmodified _ATPDLFWS_ 0 0 0 ENSG00000130287|ENST00000252575|NCAN;ENST00000590187.2_1_19:19337677-19349276:+|nuORF ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN MSMS UPN46_class_I_Rep_3 1 468.7265319824219 2 468.726718 935.438883 NaN NaN NaN NaN NaN NaN NaN 102.98 1 102.98 102.48 103.48 0 0 0 0 0.40404 1 25132 25132 5.2307 0 1 1643 2651 1012 1013 2077 2077 -0.03141879402244285 ATPQYTVFV 9 Unmodified _ATPQYTVFV_ 0 0 0 REV__ENST00000522694.1_1_8:30402710-30404937:+|nuORF REV__ENST00000522694.1_1_8:30402710-30404937:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.2686157226562 2 513.26875 1024.52295 0.2397 0.00012303 -0.080963 -4.1556E-05 0.15874 8.1475E-05 513.2686293980911 72.283 0.6706 75.663 75.379 76.05 3.3799 73 50 2 0 0 0 0.30034 1 17682 17682 13.906 0 1 133360 + 1644 22794 1013 1014 2078 2078 0.011666516946434058 ATPQYTVFV 9 Unmodified _ATPQYTVFV_ 0 0 0 REV__ENST00000522694.1_1_8:30402710-30404937:+|nuORF REV__ENST00000522694.1_1_8:30402710-30404937:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.2688598632812 2 513.26875 1024.52295 0.28199 0.00014474 -0.18887 -9.694E-05 0.093126 4.7799E-05 513.2685275210669 72.479 0.71982 75.706 75.339 76.059 3.2271 95 61 2 0 0 0 0.21527 2 17867 17813;17867 19.257 0 1 134570 + 1645 22794 1013 1014 2079;2080 2080 0.011666516946434058 ATPSELFI 8 Unmodified _ATPSELFI_ 0 0 0 REV__ENSG00000177414|ENST00000371077|UBE2U REV__ENSG00000177414|ENST00000371077|UBE2U MSMS UPN48_class_I_Rep_1 5 439.2356262207031 2 439.236919 876.459284 NaN NaN NaN NaN NaN NaN NaN 94.191 1 97.812 97.312 98.312 3.6208 0 0 0 0.39624 1 22660 22660 9.3474 0 1 + 1646 20620 1014 1015 2081 2081 0.01611291257574976 ATPSELFI 8 Unmodified _ATPSELFI_ 0 0 0 REV__ENSG00000177414|ENST00000371077|UBE2U REV__ENSG00000177414|ENST00000371077|UBE2U MSMS UPN48_class_I_Rep_1 5 439.23614501953125 2 439.236919 876.459284 NaN NaN NaN NaN NaN NaN NaN 94.452 1 98.073 97.573 98.573 3.6208 0 0 0 0.40404 1 22730 22730 5.2307 0 1 + 1647 20620 1014 1015 2082 2082 0.01611291257574976 ATQKDAITTY 10 Unmodified _ATQKDAITTY_ 0 0 0 REV__L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|90|2|sense REV__L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|90|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2840576171875 2 556.285128 1110.5557 -0.022775 -1.2669E-05 -0.12695 -7.062E-05 -0.14972 -8.3289E-05 556.2850540207653 35.963 0.42555 39.639 39.445 39.87 3.6762 51 28 2 0 0 0 0.4561 1 6703 6703 15.248 1.3424 1 87609 + 1648 30146 1015 1016 2083 2083 0.004848140268450152 ATQKDAITTY 10 Unmodified _ATQKDAITTY_ 0 0 0 REV__L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|90|2|sense REV__L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|90|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2852783203125 2 556.285128 1110.5557 0.045484 2.5302E-05 -0.34201 -0.00019025 -0.29652 -0.00016495 556.2850179295679 36.262 0.44036 39.673 39.444 39.884 3.4114 51 32 2 0 0 0 0.51021 1 6832 6832 10.8 1.4164 1 124660 + 1649 30146 1015 1016 2084 2084 0.004848140268450152 ATRFVVIYY 9 Unmodified _ATRFVVIYY_ 0 0 0 MLT1C_dup6236|chr5:139576159-139576489:-|1.7942197657942445|0.0090889142906821|7.63|151.0|14|3|sense MLT1C_dup6236|chr5:139576159-139576489:-|1.7942197657942445|0.0090889142906821|7.63|151.0|14|3|sense MLT1C_dup6236|chr5:139576159-139576489:-|1.7942197657942445|0.0090889142906821|7.63|151.0|14|3|sense MSMS UPN47_class_I_Rep_2 3 566.3150024414062 2 566.313492 1130.61243 NaN NaN NaN NaN NaN NaN NaN 71.052 1 74.334 73.834 74.834 3.2828 0 0 0 0.381 1 17344 17344 5.2307 0.90143 1 1650 16313 1016 1017 2085 2085 0.05234906374039383 ATRKKSHQLTI 11 Unmodified _ATRKKSHQLTI_ 0 0 0 L1MEf_dup6865|chrX:73979574-73980456:-|2.1449994355076485|0.1510364524183799|3.83|151.0|8|1|sense L1MEf_dup6865|chrX:73979574-73980456:-|2.1449994355076485|0.1510364524183799|3.83|151.0|8|1|sense L1MEf_dup6865|chrX:73979574-73980456:-|2.1449994355076485|0.1510364524183799|3.83|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.8836059570312 2 641.883136 1281.75172 0.44288 0.00028428 -0.9834 -0.00063123 -0.54052 -0.00034695 641.8824156598192 89.223 0.38798 92.848 92.755 93.143 3.6255 69 42 2 0 0 0 0.67519 1 21431 21431 0.96228 0.56156 1 139530 1651 13310 1017 1018 2086 2086 0.12211243991418996 ATRKKSHQLTI 11 Unmodified _ATRKKSHQLTI_ 0 0 0 L1MEf_dup6865|chrX:73979574-73980456:-|2.1449994355076485|0.1510364524183799|3.83|151.0|8|1|sense L1MEf_dup6865|chrX:73979574-73980456:-|2.1449994355076485|0.1510364524183799|3.83|151.0|8|1|sense L1MEf_dup6865|chrX:73979574-73980456:-|2.1449994355076485|0.1510364524183799|3.83|151.0|8|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 641.8828735351562 2 641.883136 1281.75172 0.44438 0.00028524 -0.90089 -0.00057826 -0.4565 -0.00029302 641.8824512451783 88.612 0.28877 92.235 92.179 92.468 3.6229 67 37 3 0 0 0 22.551 1 21288 21288 2.4985 1.0166 1 266810 1652 13310 1017 1018 2087 2087 0.12211243991418996 ATRKLASKLST 11 Unmodified _ATRKLASKLST_ 0 0 0 REV__ENST00000523638.5_1_19:37016107-37016215:-|nuORF REV__ENST00000523638.5_1_19:37016107-37016215:-|nuORF MSMS UPN47_class_I_Rep_3 4 588.359619140625 2 588.358962 1174.70337 NaN NaN NaN NaN NaN NaN NaN 90.063 1 93.461 92.961 93.961 3.3976 0 0 0 0.38417 1 22576 22576 0.96228 0.36078 1 + 1653 22798 1018 1019 2088 2088 0.12300750351505485 ATSTVRRPV 9 Unmodified _ATSTVRRPV_ 0 0 0 REV__ENST00000466021.5_1_8:38277052-38277133:-|nuORF REV__ENST00000466021.5_1_8:38277052-38277133:-|nuORF MSMS UPN46_class_I_Rep_3 1 493.5565490722656 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 64.194 1 64.194 63.694 64.694 0 0 0 0 0.39518 1 14436 14436 1.8442 0.19162 1 + 1654 22472 1019 1020 2089 2089 0.07351680911665426 ATTDWIAIY 9 Unmodified _ATTDWIAIY_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MSMS UPN48_class_I_Rep_1 5 527.2669677734375 2 527.266207 1052.51786 NaN NaN NaN NaN NaN NaN NaN 76.777 1 80.288 79.788 80.788 3.5102 0 0 0 0.081393 1 18244 18244 28.487 8.0332 1 1655 3268 1020 1021 2090 2090 -0.006296521679587386 ATTDWIAIY 9 Unmodified _ATTDWIAIY_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MSMS UPN48_class_I_Rep_1 5 527.2661743164062 2 527.266207 1052.51786 NaN NaN NaN NaN NaN NaN NaN 76.899 1 80.409 79.909 80.909 3.5102 0 0 0 0.025567 1 18279 18279 50.855 10.898 1 1656 3268 1020 1021 2091 2091 -0.006296521679587386 ATTDWIAIY 9 Unmodified _ATTDWIAIY_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MSMS UPN48_class_I_Rep_1 5 527.265869140625 2 527.266207 1052.51786 NaN NaN NaN NaN NaN NaN NaN 77.02 1 80.53 80.03 81.03 3.5102 0 0 0 0.025567 1 18311 18311 50.855 10.898 1 1657 3268 1020 1021 2092 2092 -0.006296521679587386 ATTDWIAIY 9 Unmodified _ATTDWIAIY_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MSMS UPN48_class_I_Rep_1 5 527.2667236328125 2 527.266207 1052.51786 NaN NaN NaN NaN NaN NaN NaN 77.143 1 80.654 80.154 81.154 3.5102 0 0 0 0.11494 1 18344 18344 21.747 2.3076 1 1658 3268 1020 1021 2093 2093 -0.006296521679587386 ATTDWIAIY 9 Unmodified _ATTDWIAIY_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MULTI-MSMS UPN48_class_I_Rep_2 6 527.2666015625 2 527.266207 1052.51786 0.39896 0.00021036 -0.55726 -0.00029382 -0.1583 -8.3467E-05 527.2661799457517 76.811 0.5467 80.422 80.122 80.669 3.6116 71 54 2 0 0 0 0.12799 4 18111 18111;18129;18165;18167 28.487 13.649 1 109890 1659 3268 1020 1021 2094;2095;2096;2097 2094 -0.006296521679587386 ATTDWIAIY 9 Unmodified _ATTDWIAIY_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MULTI-MSMS UPN48_class_I_Rep_3 7 527.2669067382812 2 527.266207 1052.51786 0.50454 0.00026603 -0.67356 -0.00035515 -0.16902 -8.9118E-05 527.266132424133 76.814 0.52953 80.397 80.165 80.694 3.5831 86 51 2 0 0 0 0.090595 7 18140 18051;18060;18092;18100;18126;18140;18166 36.044 3.7387 1 171810 1660 3268 1020 1021 2098;2099;2100;2101;2102;2103;2104 2103 -0.006296521679587386 ATVDWFRRY 9 Unmodified _ATVDWFRRY_ 0 0 0 ENST00000523057.1_1_5:172402993-172403200:+|nuORF;ENST00000610026.1_1_10:71965926-71969460:-|nuORF;ENSG00000180817|ENST00000373232|PPA1 ENST00000523057.1_1_5:172402993-172403200:+|nuORF ENST00000523057.1_1_5:172402993-172403200:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 405.1924743652344 3 405.208607 1212.60399 -0.14058 -5.6964E-05 -0.088065 -3.5685E-05 -0.22864 -9.2649E-05 405.20844018037053 50.154 0.28264 53.679 53.608 53.891 3.5246 26 16 2 0 0 0 0.1196 1 10253 10253 9.544 5.6676 1 118890 1661 4899 1021 1022 2105 2105 0.006193524574200637 ATVESILEI 9 Unmodified _ATVESILEI_ 0 0 0 L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 487.7738037109375 2 487.773865 973.533177 NaN NaN NaN NaN NaN NaN NaN 79.423 1 83.056 82.556 83.556 3.6331 0 0 0 0.046744 1 18868 18868 37.974 0 1 1662 13980 1022 1023 2106 2106 0.04535214629231632 ATVESILEI 9 Unmodified _ATVESILEI_ 0 0 0 L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 487.7737121582031 2 487.773865 973.533177 NaN NaN NaN NaN NaN NaN NaN 79.599 1 83.232 82.732 83.732 3.6331 0 0 0 0.029163 1 18917 18917 46.021 0 1 1663 13980 1022 1023 2107 2107 0.04535214629231632 ATVESILEI 9 Unmodified _ATVESILEI_ 0 0 0 L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense L1PA15_dup7398|chr15:56219370-56220215:-|2.1859693576831867|0.0300688509489599|6.18|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 487.7743835449219 2 487.773865 973.533177 NaN NaN NaN NaN NaN NaN NaN 79.437 1 83.079 82.579 83.579 3.6423 0 0 0 0.096434 1 18836 18836 25.399 0 1 1664 13980 1022 1023 2108 2108 0.04535214629231632 ATVFRQYL 8 Unmodified _ATVFRQYL_ 0 0 0 L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|48|2|sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|48|2|sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 499.27740478515625 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 39.784 1 43.155 42.655 43.655 3.3712 0 0 0 0.40643 1 7852 7852 2.0598 0 1 1665 9600 1023 1024 2109 2109 0.04085777651414446 ATVKKGKPELR 11 Unmodified _ATVKKGKPELR_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_1 2 613.8825073242188 2 613.882604 1225.75066 -0.087649 -5.3806E-05 -0.41801 -0.00025661 -0.50566 -0.00031042 613.8822573168941 13.606 0.27711 17.063 16.977 17.254 3.457 67 33 3 0 0 0 0.31564 1 370 370 14.218 6.6092 1 72785 1666 2511 1024 1025 2110 2110 0.14681029622511232 ATVKKGKPELR 11 Unmodified _ATVKKGKPELR_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_2 3 613.8829956054688 2 613.882604 1225.75066 0.048273 2.9634E-05 -0.49418 -0.00030337 -0.44591 -0.00027374 613.8822947204569 13.743 0.26161 17.131 17.015 17.276 3.388 59 30 3 0 0 0 0.64297 1 393 393 3.8763 1.3778 1 35780 1667 2511 1024 1025 2111 2111 0.14681029622511232 ATVKKGKPELR 11 Unmodified _ATVKKGKPELR_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_3 4 613.8822021484375 2 613.882604 1225.75066 -0.425 -0.0002609 -0.12925 -7.9345E-05 -0.55426 -0.00034025 613.8825519954532 13.785 0.23511 17.154 17.062 17.297 3.3697 39 25 2 0 0 0 0.45168 1 394 394 8.9762 0.82072 1 38694 1668 2511 1024 1025 2112 2112 0.14681029622511232 ATVNFITSY 9 Unmodified _ATVNFITSY_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000460777.1_1_1:6609570-6610501:-|nuORF;ENST00000464665.1_1_1:6609570-6614245:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-SECPEP UPN48_class_I_Rep_1 5 508.2593688964844 2 508.258382 1014.50221 0.33478 0.00017015 -0.15587 -7.9222E-05 0.17891 9.0933E-05 508.2581857671799 64.424 0.25016 67.878 67.778 68.028 3.4541 29 21 2 0 0 0 0.11198 1 14582 14582 15.248 3.7538 1 110250 1669 3930 1025 1026 2113 2113 -0.0044593868499305245 ATYFWLPWSL 10 Unmodified _ATYFWLPWSL_ 0 0 0 REV__ENSG00000161664.7,ASB16,chr17,+,I2.1,44171091,44172045|24|7.08|1|intron REV__ENSG00000161664.7,ASB16,chr17,+,I2.1,44171091,44172045|24|7.08|1|intron MSMS UPN48_class_I_Rep_2 6 642.3446655273438 2 642.326599 1282.63865 NaN NaN NaN NaN NaN NaN NaN 61.773 1 65.246 64.746 65.746 3.4738 0 0 0 0.53105 1 13750 13750 1.4819 0.15237 1 + 1670 19909 1026 1027 2114 2114 0.008631755455098755 ATYIFLQTF 9 Unmodified _ATYIFLQTF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN48_class_I_Rep_1 5 552.29296875 2 552.292225 1102.5699 0.50953 0.00028141 0.17912 9.8925E-05 0.68865 0.00038033 552.2923221629284 86.079 0.55598 89.692 89.36 89.916 3.613 97 59 2 0 0 0 0.053261 4 20599 20547;20574;20599;20633 47.594 13.193 1 213190 1671 4243 1027 1028 2115;2116;2117;2118 2117 0.022715112457944997 ATYIFLQTF 9 Unmodified _ATYIFLQTF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN48_class_I_Rep_2 6 552.2923583984375 2 552.292225 1102.5699 0.49102 0.00027119 0.17175 9.4857E-05 0.66278 0.00036605 552.2923418770717 86.004 0.53969 89.709 89.406 89.946 3.7058 109 58 2 0 0 0 0.033731 4 20422 20422;20461;20486;20504 55.503 17.327 1 180720 1672 4243 1027 1028 2119;2120;2121;2122 2119 0.022715112457944997 ATYIFLQTF 9 Unmodified _ATYIFLQTF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN48_class_I_Rep_3 7 552.292236328125 2 552.292225 1102.5699 0.41287 0.00022803 0.30845 0.00017036 0.72133 0.00039838 552.29242418182 85.852 0.25729 89.622 89.414 89.672 3.7701 47 28 2 0 0 0 0.073198 2 20370 20333;20370 40.239 12.61 1 213870 1673 4243 1027 1028 2123;2124 2124 0.022715112457944997 ATYIFLQTF 9 Unmodified _ATYIFLQTF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN48_class_I_Rep_3 7 552.2926635742188 2 552.292225 1102.5699 0.41166 0.00022736 0.15392 8.5009E-05 0.56558 0.00031237 552.2923671323445 85.982 0.34005 89.752 89.664 90.005 3.7701 55 42 2 0 0 0 0.16799 2 20402 20402;20438 23.79 7.6407 1 162060 1674 4243 1027 1028 2125;2126 2125 0.022715112457944997 ATYIFLQTF 9 Unmodified _ATYIFLQTF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MATCH UPN48_class_I_Rep_2 6 2 552.292225 1102.5699 0.49099 0.00027117 1.0778 0.00059527 1.5688 0.00086644 552.2928608499476 86.247 0.051201 89.965 89.95 90.002 3.7171 0.17134 0.00079573 NaN 40.239 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 74144 1675 4243 1027 1028 0.022715112457944997 ATYLRQPTY 9 Unmodified _ATYLRQPTY_ 0 0 0 ENSG00000171132|ENST00000306156|PRKCE;nc|ENSG00000027075|P24723-2|PRKCH;ENSG00000027075|ENST00000332981|PRKCH ENSG00000171132|ENST00000306156|PRKCE;nc|ENSG00000027075|P24723-2|PRKCH nc|ENSG00000027075|P24723-2|PRKCH MSMS UPN48_class_I_Rep_3 7 556.7902221679688 2 556.790381 1111.56621 NaN NaN NaN NaN NaN NaN NaN 39.32 1 42.975 42.475 43.475 3.6557 0 0 0 0.38916 1 6863 6863 3.2813 0.97858 1 1676 4508;826 1028 1029 2127 2127 0.014888414719507637 ATYPNEANFGL 11 Unmodified _ATYPNEANFGL_ 0 0 0 REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 598.7830200195312 2 598.782753 1195.55095 0.47032 0.00028162 -0.082093 -4.9156E-05 0.38823 0.00023246 598.7827156745716 76.776 0.60133 80.107 79.774 80.375 3.3315 102 62 2 0 0 0 0.45168 1 19015 19015 8.9762 0.23084 1 131300 + 1677 17503 1029 1030 2128 2128 -0.039000701159238815 ATYPNEANFGL 11 Unmodified _ATYPNEANFGL_ 0 0 0 REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_1 2 2 598.782753 1195.55095 0.4123 0.00024688 -0.1424 -8.5266E-05 0.2699 0.00016161 598.7826075042265 76.531 0.53728 79.946 79.697 80.235 3.4149 -0.082508 -0.00016873 NaN 8.9762 84 50 2 NaN NaN NaN NaN 0 NaN NaN 0 128030 + 1678 17503 1029 1030 -0.039000701159238815 AVAEFEINSNF 11 Unmodified _AVAEFEINSNF_ 0 0 0 Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 620.7965698242188 2 620.79586 1239.57717 0.44624 0.00027702 -0.19935 -0.00012376 0.24689 0.00015327 620.7956501507325 77.143 0.65511 80.558 80.316 80.971 3.4149 123 57 3 0 0 0 0.30462 3 19230 19069;19146;19230 26.268 0 1 258930 1679 32996 1030 1031 2129;2130;2131 2131 -0.033038009444453564 AVAEFEINSNF 11 Unmodified _AVAEFEINSNF_ 0 0 0 Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 620.7965698242188 2 620.79586 1239.57717 0.47607 0.00029554 -0.19152 -0.0001189 0.28455 0.00017665 620.7956833284298 77.314 0.696 80.645 80.383 81.079 3.3315 153 70 3 0 0 0 0.2728 5 19134 19110;19134;19173;19209;19248 32.786 0 1 214700 1680 32996 1030 1031 2132;2133;2134;2135;2136 2133 -0.033038009444453564 AVAEFEINSNF 11 Unmodified _AVAEFEINSNF_ 0 0 0 Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|76|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 620.79638671875 2 620.79586 1239.57717 0.47042 0.00029203 -0.107 -6.6423E-05 0.36342 0.00022561 620.7957306398096 77.344 0.67924 80.613 80.38 81.059 3.269 149 71 3 0 0 0 0.2728 4 19322 19206;19242;19281;19322 32.786 0 1 258010 1681 32996 1030 1031 2137;2138;2139;2140 2140 -0.033038009444453564 AVAKKTMRFV 10 Unmodified _AVAKKTMRFV_ 0 0 0 Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|103|3|anti-sense Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|103|3|anti-sense Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|103|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 575.8425903320312 2 575.841894 1149.66923 0.49487 0.00028497 1.0396 0.00059864 1.5345 0.00088361 575.8423601587624 87.078 0.18056 87.078 87.035 87.216 0 44 18 3 0 0 0 0.54822 1 20864 20864 5.7319 3.1544 1 730500 1682 33134 1031 1032 2141 2141 0.10038630658891634 AVAKKTMRFV 10 Unmodified _AVAKKTMRFV_ 0 0 0 Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|103|3|anti-sense Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|103|3|anti-sense Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|103|3|anti-sense MSMS UPN46_class_I_Rep_3 1 575.8425903320312 2 575.841894 1149.66923 NaN NaN NaN NaN NaN NaN NaN 87.831 1 87.831 87.331 88.331 0 0 0 0 0.53105 1 21066 21066 5.7319 0 1 1683 33134 1031 1032 2142 2142 0.10038630658891634 AVATELLQL 9 Unmodified _AVATELLQL_ 0 0 0 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS UPN47_class_I_Rep_1 2 479.2847595214844 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 65.396 1 68.751 68.251 69.251 3.3557 0 0 0 0.31276 1 15596 15596 10.074 0 1 + 1684 21092 1032 1033 2143 2143 0.07423224728779587 AVATELLQL 9 Unmodified _AVATELLQL_ 0 0 0 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS UPN47_class_I_Rep_3 4 479.2842102050781 2 479.2844 956.554247 0.066702 3.1969E-05 0.025502 1.2223E-05 0.092204 4.4192E-05 479.2844691679857 65.718 0.65651 68.897 68.532 69.189 3.1795 51 41 2 0 0 0 0.21527 1 15763 15763 19.257 1.1106 1 71134 + 1685 21092 1032 1033 2144 2144 0.07423224728779587 AVATELLQL 9 Unmodified _AVATELLQL_ 0 0 0 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MATCH UPN47_class_I_Rep_1 2 2 479.2844 956.554247 0.09581 4.592E-05 -0.44092 -0.00021132 -0.34511 -0.0001654 479.28430609064316 65.623 0.11266 68.979 68.888 69.001 3.3557 0.025208 -0.00035734 NaN 19.257 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 40372 + 1686 21092 1032 1033 0.07423224728779587 AVCFQEFNYFF 11 Unmodified _AVCFQEFNYFF_ 0 0 0 L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|143|3|anti-sense L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|143|3|anti-sense L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|143|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 471.75567626953125 3 472.209396 1413.60636 0.096545 4.5589E-05 -0.69977 -0.00033044 -0.60323 -0.00028485 472.20904174211785 43.576 0.51559 47.087 46.923 47.439 3.5103 76 44 2 0 0 0 22.551 1 8214 8214 3.0723 0.44103 1 187820 1687 14151 1033 1034 2145 2145 -0.08389979919797952 AVCYHHPVEI 10 Unmodified _AVCYHHPVEI_ 0 0 0 REV__L1PBa_dup597|chr4:90404026-90407649:+|1.196524570808598|0.023259738916578|5.68|148.0|182|2|anti-sense REV__L1PBa_dup597|chr4:90404026-90407649:+|1.196524570808598|0.023259738916578|5.68|148.0|182|2|anti-sense MSMS UPN48_class_I_Rep_1 5 584.2877807617188 2 584.284408 1166.55426 NaN NaN NaN NaN NaN NaN NaN 59.927 1 63.408 62.908 63.908 3.4801 0 0 0 0.53105 1 13211 13211 6.7232 2.3939 1 + 1688 30655 1034 1035 2146 2146 -0.022350985428829517 AVDGNTVEL 9 Unmodified _AVDGNTVEL_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_1 2 459.23223876953125 2 459.232364 916.450176 -0.20088 -9.225E-05 0.19151 8.7946E-05 -0.0093728 -4.3043E-06 459.23236214301585 45.052 1.2853 48.752 48.404 49.689 3.6999 157 76 3 0 0 0 0.006343 2 9445 9445;9487 74.929 4.8455 1 467140 1689 4804 1035 1036 2147;2148 2147 -0.011391020987502998 AVDGNTVEL 9 Unmodified _AVDGNTVEL_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_2 3 459.2322082519531 2 459.232364 916.450176 -0.27478 -0.00012619 0.29201 0.0001341 0.017232 7.9136E-06 459.23238832626953 45.384 1.23 48.738 48.36 49.59 3.3534 168 75 3 0 0 0 0.0052487 3 9542 9542;9583;9629 92.491 4.2135 1 433180 1690 4804 1035 1036 2149;2150;2151 2149 -0.011391020987502998 AVDGNTVEL 9 Unmodified _AVDGNTVEL_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_3 4 459.2323303222656 2 459.232364 916.450176 -0.33828 -0.00015535 0.35508 0.00016306 0.016802 7.7161E-06 459.2324440187096 45.414 1.2805 48.658 48.314 49.595 3.2441 162 77 3 0 0 0 0.0052487 4 9643 9563;9602;9643;9682 92.491 5.322 1 529500 1691 4804 1035 1036 2152;2153;2154;2155 2154 -0.011391020987502998 AVDIKGQEGA 10 Unmodified _AVDIKGQEGA_ 0 0 0 REV__L1MD1_dup37|chr1:19091467-19092341:+|1.5257640080608477|0.3514355612016839|2.12|151.0|13|2|sense REV__L1MD1_dup37|chr1:19091467-19092341:+|1.5257640080608477|0.3514355612016839|2.12|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 494.2588806152344 2 494.258914 986.503274 NaN NaN NaN NaN NaN NaN NaN 28.555 1 28.555 28.055 29.055 0 0 0 0 0.53105 1 4401 4401 4.5289 0.19963 1 + 1692 27327 1036 1037 2156 2156 0.009482756839133799 AVDPAEYYKR 10 Unmodified _AVDPAEYYKR_ 0 0 0 ENSG00000198788|ENST00000675028|MUC2;nc|ENSG00000198788|Q02817|MUC2 ENSG00000198788|ENST00000675028|MUC2 ENSG00000198788|ENST00000675028|MUC2 MSMS UPN47_class_I_Rep_2 3 404.5409851074219 3 404.540022 1210.59824 NaN NaN NaN NaN NaN NaN NaN 61.691 1 64.95 64.45 65.45 3.2594 0 0 0 0.53105 1 14520 14520 3.0723 0 1 1693 5461 1037 1038 2157 2157 0.0013620915506180609 AVDPRFLAY 9 Unmodified _AVDPRFLAY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS UPN47_class_I_Rep_1 2 526.282470703125 2 526.282192 1050.54983 0.30473 0.00016037 -1.1874 -0.0006249 -0.88265 -0.00046452 526.2813687789427 56.561 0.90975 60.018 59.609 60.519 3.4572 109 64 4 0 0 0 0.1249 1 12876 12876 29.082 6.3453 1 482880 1694 1537 1038 1039 2158 2158 0.026577603058285604 AVDPRFLAY 9 Unmodified _AVDPRFLAY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MATCH UPN47_class_I_Rep_2 3 2 526.282192 1050.54983 0.1937 0.00010194 -1.6866 -0.00088764 -1.4929 -0.00078571 526.2812298673938 56.815 0.85612 60.116 59.738 60.594 3.3009 0.036866 2.8342E-05 NaN 29.082 126 66 2 NaN NaN NaN NaN 0 NaN NaN 0 502530 1695 1537 1038 1039 0.026577603058285604 AVDPRFLAY 9 Unmodified _AVDPRFLAY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MATCH UPN47_class_I_Rep_3 4 2 526.282192 1050.54983 0.2907 0.00015299 -1.9569 -0.0010299 -1.6662 -0.00087689 526.2810157302179 56.931 0.85487 60.104 59.719 60.574 3.1721 0.024442 -0.00025613 NaN 29.082 139 71 2 NaN NaN NaN NaN 0 NaN NaN 0 530000 1696 1537 1038 1039 0.026577603058285604 AVDPTSGQLY 10 Unmodified _AVDPTSGQLY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN47_class_I_Rep_1 2 525.758544921875 2 525.758746 1049.50294 0.14274 7.5048E-05 -0.25723 -0.00013524 -0.11449 -6.0193E-05 525.7585183504164 48.828 0.88802 52.51 52.165 53.053 3.6819 158 60 4 0 0 0 1.3323E-06 4 10546 10503;10546;10587;10629 136.39 88.046 1 959770 1697 2735 1039 1040 2159;2160;2161;2162 2160 -0.01983144035943951 AVDPTSGQLY 10 Unmodified _AVDPTSGQLY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN47_class_I_Rep_2 3 525.7586669921875 2 525.758746 1049.50294 0.057809 3.0394E-05 -0.16752 -8.8074E-05 -0.10971 -5.7681E-05 525.7585578784094 49.081 0.98786 52.428 52.082 53.07 3.3465 181 66 4 0 0 0 8.7639E-09 5 10676 10594;10636;10676;10717;10758 155.95 98.232 1 887960 1698 2735 1039 1040 2163;2164;2165;2166;2167 2165 -0.01983144035943951 AVDPTSGQLY 10 Unmodified _AVDPTSGQLY_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 525.758746 1049.50294 0.3493 0.00018365 -0.40657 -0.00021376 -0.057278 -3.0114E-05 525.7584780140459 49.164 0.97946 52.398 52.07 53.05 3.2345 -0.047117 -0.00012035 NaN 155.95 167 59 4 NaN NaN NaN NaN 0 NaN NaN 0 808850 1699 2735 1039 1040 -0.01983144035943951 AVEVAYALFL 10 Unmodified _AVEVAYALFL_ 0 0 0 REV__ENSG00000185105|ENST00000409745|MYADML2 REV__ENSG00000185105|ENST00000409745|MYADML2 MULTI-MSMS UPN47_class_I_Rep_3 4 548.3079223632812 2 548.307875 1094.6012 0.49544 0.00027166 0.074218 4.0695E-05 0.56966 0.00031235 548.3078474869038 96.562 0.16508 99.976 99.878 100.04 3.414 36 23 2 0 0 0 0.32062 1 23933 23933 26.884 1.4843 1 197270 + 1700 20843 1040 1041 2168 2168 0.05768084279884533 AVFERGGPL 9 Unmodified _AVFERGGPL_ 0 0 0 ENST00000307808.10_1_4:87928163-87928310:+|nuORF ENST00000307808.10_1_4:87928163-87928310:+|nuORF ENST00000307808.10_1_4:87928163-87928310:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 473.7618103027344 2 473.261259 944.507966 0.16563 7.8387E-05 -3.4618 -0.0016383 -3.2962 -0.00156 473.2586435547553 58.227 0.10415 58.227 58.145 58.249 0 14 13 2 0 0 0 0.40174 1 12806 12806 7.9102 1.5561 1 74201 1701 6098 1041 1042 2169 2169 0.03349204617347823 AVGADAAYVF 10 Unmodified _AVGADAAYVF_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF;ENST00000474114.5_1_21:45741509-45744801:+|nuORF;ENST00000498841.5_1_21:45739892-45744801:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MSMS UPN47_class_I_Rep_2 3 492.2425537109375 2 492.245275 982.475997 NaN NaN NaN NaN NaN NaN NaN 29.936 1 33.429 32.929 33.929 3.4923 0 0 0 0.53105 1 4865 4865 10.074 0.6908 1 1702 7091 1042 1043 2170 2170 -0.015942078564876283 AVGVLLHRNQA 11 Unmodified _AVGVLLHRNQA_ 0 0 0 HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense MSMS UPN47_class_I_Rep_1 2 589.343017578125 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 82.475 1 85.987 85.487 86.487 3.5122 0 0 0 0.38417 1 20604 20604 1.4819 0 1 1703 8141 1043 1044 2171 2171 0.09147016757151505 AVGYLFHP 8 Unmodified _AVGYLFHP_ 0 0 0 REV__SVA_B_dup637|chr15:52459175-52460680:-|1.0060003347237476|0.0711447853722298|3.82|151.0|49|1|anti-sense REV__SVA_B_dup637|chr15:52459175-52460680:-|1.0060003347237476|0.0711447853722298|3.82|151.0|49|1|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2692565917969 2 452.239796 902.465038 NaN NaN NaN NaN NaN NaN NaN 32.061 1 32.061 31.561 32.561 0 0 0 0 0.40581 1 5438 5438 2.8892 0 1 + 1704 32188 1044 1045 2172 2172 0.009904345598897635 AVHALKSK 8 Unmodified _AVHALKSK_ 0 0 0 REV__ENST00000462559.1_1_3:183013976-183014306:+|nuORF REV__ENST00000462559.1_1_3:183013976-183014306:+|nuORF MSMS UPN47_class_I_Rep_3 4 427.26434326171875 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 88.03 1 91.417 90.917 91.917 3.3873 0 0 0 0.40738 1 22072 22072 0.79363 0 1 + 1705 22442 1045 1046 2173 2173 0.08597812342554789 AVHDRLLNVWQ 11 Unmodified _AVHDRLLNVWQ_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS UPN47_class_I_Rep_1 2 450.9136657714844 3 450.914083 1349.72042 -0.37696 -0.00016998 -0.193 -8.7026E-05 -0.56996 -0.000257 450.91396635229313 31.793 1.0771 35.522 35.173 36.25 3.7293 220 84 4 0 0 0 0.54468 1 5405 5405 6.6235 0.75532 1 453730 1706 4045 1046 1047 2174 2174 0.05954670957316921 AVHPPYWV 8 Unmodified _AVHPPYWV_ 0 0 0 HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|181|1|anti-sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|181|1|anti-sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|181|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.75299072265625 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 21.551 1 25.197 24.697 25.697 3.6459 0 0 0 0.40738 1 2054 2054 0.79363 0 1 1707 8182 1047 1048 2175 2175 0.0065412345122695115 AVIDQGLITR 10 Unmodified _AVIDQGLITR_ 0 0 0 ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF ENSG00000278615|ENST00000524958|C11orf98 ENSG00000278615|ENST00000524958|C11orf98 MULTI-MSMS UPN48_class_I_Rep_1 5 543.3190307617188 2 543.319306 1084.62406 0.4033 0.00021912 -0.52611 -0.00028584 -0.12281 -6.6727E-05 543.3190870972926 46.62 0.37103 50.139 50.017 50.388 3.5192 33 25 2 0 0 0 0.43193 1 9109 9109 17.049 5.5307 1 124000 1708 5842 1048 1049 2176 2176 0.08513103397376653 AVIDQGLITR 10 Unmodified _AVIDQGLITR_ 0 0 0 ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF ENSG00000278615|ENST00000524958|C11orf98 ENSG00000278615|ENST00000524958|C11orf98 MULTI-MSMS UPN48_class_I_Rep_2 6 543.319091796875 2 543.319306 1084.62406 0.39137 0.00021264 -0.32289 -0.00017543 0.068484 3.7209E-05 543.3189969716569 46.376 0.5213 50.125 49.806 50.327 3.7494 47 31 2 0 0 0 0.34063 2 9022 9022;9064 24.957 9.2185 1 103990 1709 5842 1048 1049 2177;2178 2177 0.08513103397376653 AVIDQGLITR 10 Unmodified _AVIDQGLITR_ 0 0 0 ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF ENSG00000278615|ENST00000524958|C11orf98 ENSG00000278615|ENST00000524958|C11orf98 MULTI-MSMS UPN48_class_I_Rep_3 7 543.8217163085938 2 543.319306 1084.62406 0.42828 0.00023269 -0.26401 -0.00014344 0.16427 8.9252E-05 543.3190691313972 46.563 0.48037 50.199 50.026 50.506 3.6363 45 27 2 0 0 0 0.34063 3 9027 9018;9027;9068 24.957 13.439 1 183290 1710 5842 1048 1049 2179;2180;2181 2180 0.08513103397376653 AVIILKNKFGY 11 Unmodified _AVIILKNKFGY_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 MULTI-MSMS UPN48_class_I_Rep_1 5 422.59246826171875 3 422.592058 1264.75434 0.048903 2.0666E-05 0.87362 0.00036918 0.92252 0.00038985 422.59242641569017 60.302 0.37028 63.775 63.645 64.015 3.4737 40 24 2 0 0 0 0.6724 1 13320 13320 1.2148 0.51716 1 445620 + 1711 19936 1049 1050 2182 2182 0.13255699396381715 AVIILKNKFGY 11 Unmodified _AVIILKNKFGY_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.592058 1264.75434 -0.48671 -0.00020568 1.6217 0.0006853 1.135 0.00047962 422.592631862886 60.193 0.19259 63.466 63.372 63.565 3.2731 -0.13941 0.00066306 NaN 1.2148 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 54378 + 1712 19936 1049 1050 0.13255699396381715 AVIILKNKFGY 11 Unmodified _AVIILKNKFGY_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-4|KCNT2 MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592058 1264.75434 -0.65526 -0.00027691 1.6447 0.00069502 0.98939 0.00041811 422.59278255414193 60.343 0.24944 63.508 63.418 63.668 3.1651 -0.097081 0.0006922 NaN 1.2148 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 53273 + 1713 19936 1049 1050 0.13255699396381715 AVIIRYMKK 9 Unmodified _AVIIRYMKK_ 0 0 0 REV__L1M2c_dup75|chr4:13452073-13455939:-|3.898613414122664|0.1059276616703722|5.2|151.0|98|3|sense REV__L1M2c_dup75|chr4:13452073-13455939:-|3.898613414122664|0.1059276616703722|5.2|151.0|98|3|sense MSMS UPN48_class_I_Rep_3 7 561.8109741210938 2 561.346812 1120.67907 NaN NaN NaN NaN NaN NaN NaN 67.104 1 70.612 70.112 71.112 3.5077 0 0 0 0.39428 1 15294 15294 2.0598 0.40713 1 + 1714 24284 1050 1051 2183 2183 0.12355818664286744 AVILEQKF 8 Unmodified _AVILEQKF_ 0 0 0 L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|262|3|anti-sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|262|3|anti-sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|262|3|anti-sense MSMS UPN46_class_I_Rep_3 1 474.2821044921875 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 43.529 1 43.529 43.029 44.029 0 0 0 0 0.40581 1 8699 8699 2.8892 0 1 1715 15393 1051 1052 2184 2184 0.07335545936962262 AVIQTIYPPS 10 Unmodified _AVIQTIYPPS_ 0 0 0 L1MDa_dup5134|chr12:79851434-79852178:-|1.1032163856954316|0.0261161831701637|5.4|151.0|30|1|anti-sense L1MDa_dup5134|chr12:79851434-79852178:-|1.1032163856954316|0.0261161831701637|5.4|151.0|30|1|anti-sense L1MDa_dup5134|chr12:79851434-79852178:-|1.1032163856954316|0.0261161831701637|5.4|151.0|30|1|anti-sense MSMS UPN46_class_I_Rep_3 1 544.8026123046875 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 29.566 1 29.566 29.066 30.066 0 0 0 0 0.53105 1 4699 4699 1.3295 0 1 1716 12133 1052 1053 2185 2185 0.05106896274514838 AVKAVHGK 8 Unmodified _AVKAVHGK_ 0 0 0 nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2 nc|ENSG00000157152|Q92777-2|SYN2 nc|ENSG00000157152|Q92777-2|SYN2 MSMS UPN47_class_I_Rep_2 3 405.2540283203125 2 405.253237 808.491922 NaN NaN NaN NaN NaN NaN NaN 26.158 1 29.652 29.152 30.152 3.4945 0 0 0 0.40604 1 3742 3742 2.5775 0 1 1717 3752 1053 1054 2186 2186 0.08001543171087633 AVKKDSVVCTF 11 Unmodified _AVKKDSVVCTF_ 0 0 0 REV__L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|127|1|anti-sense REV__L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|127|1|anti-sense MSMS UPN48_class_I_Rep_3 7 598.8202514648438 2 598.820824 1195.62709 NaN NaN NaN NaN NaN NaN NaN 65.953 1 69.46 68.96 69.96 3.5077 0 0 0 0.37931 1 14944 14944 7.1017 0.89594 1 + 1718 28449 1054 1055 2187 2187 0.03710610459847885 AVKQLELF 8 Unmodified _AVKQLELF_ 0 0 0 REV__nc|ENSG00000137497|Q14980-4|NUMA1 REV__nc|ENSG00000137497|Q14980-4|NUMA1 MULTI-MSMS UPN46_class_I_Rep_3 1 474.28228759765625 2 474.28166 946.548768 0.19668 9.328E-05 1.275 0.00060472 1.4717 0.000698 474.28221238759625 39.341 0.079216 39.341 39.318 39.397 0 11 6 3 0 0 0 0.82752 1 7554 7554 5.7604 1.0044 1 1446000 + 1719 19234 1055 1056 2188 2188 0.07335545936950894 AVKSFKNSRA 10 Unmodified _AVKSFKNSRA_ 0 0 0 REV__L1M2_dup6321|chr10:73362295-73362922:-|1.0337100255063454|0.4651443801934951|1.15|151.0|10|2|sense REV__L1M2_dup6321|chr10:73362295-73362922:-|1.0337100255063454|0.4651443801934951|1.15|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 554.3157958984375 2 554.317097 1106.61964 NaN NaN NaN NaN NaN NaN NaN 41.075 1 44.441 43.941 44.941 3.3655 0 0 0 0.53105 1 8241 8241 1.1933 0.39971 1 + 1720 24221 1056 1057 2189 2189 0.07059638974487825 AVLAAEQWIF 10 Unmodified _AVLAAEQWIF_ 0 0 0 L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|281|2|anti-sense L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|281|2|anti-sense L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|281|2|anti-sense MSMS UPN48_class_I_Rep_3 7 574.7802734375 2 574.310949 1146.60735 NaN NaN NaN NaN NaN NaN NaN 62.544 1 66.055 65.555 66.555 3.5104 0 0 0 0.53105 1 13910 13910 3.2813 0.54611 1 1721 14272 1057 1058 2190 2190 0.03990602511407815 AVLAGDVTKL 10 Unmodified _AVLAGDVTKL_ 0 0 0 REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.79888916015625 2 493.797675 985.580796 -0.12623 -6.233E-05 0.1429 7.0562E-05 0.01667 8.2318E-06 493.7977329655505 45.072 0.55131 48.772 48.603 49.154 3.6999 52 32 2 0 0 0 0.40112 2 9448 9448;9494 19.362 0.98885 1 79500 + 1722 22434 1058 1059 2191;2192 2191 0.08742913620085346 AVLAGDVTKL 10 Unmodified _AVLAGDVTKL_ 0 0 0 REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.79754638671875 2 493.797675 985.580796 0.020176 9.9628E-06 0.32297 0.00015948 0.34315 0.00016945 493.7978419535637 45.531 0.50745 48.775 48.615 49.123 3.2441 48 30 2 0 0 0 0.46742 1 9689 9689 14.405 0.79051 1 88494 + 1723 22434 1058 1059 2193 2193 0.08742913620085346 AVLAGDVTKL 10 Unmodified _AVLAGDVTKL_ 0 0 0 REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 493.797675 985.580796 -0.12623 -6.233E-05 0.1429 7.0562E-05 0.01667 8.2318E-06 493.7977329655505 45.072 0.55131 48.772 48.603 49.154 3.6999 -0.041153 -3.8168E-05 NaN 19.362 52 32 2 NaN NaN NaN NaN 0 NaN NaN 0 79500 + 1724 22434 1058 1059 0.08742913620085346 AVLAGDVTKL 10 Unmodified _AVLAGDVTKL_ 0 0 0 REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF REV__ENST00000461436.1_1_3:152017982-152019737:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 493.797675 985.580796 0.020176 9.9628E-06 0.32297 0.00015948 0.34315 0.00016945 493.7978419535637 45.531 0.50745 48.775 48.615 49.123 3.2441 -0.038318 0.00013967 NaN 19.362 48 30 2 NaN NaN NaN NaN 0 NaN NaN 0 88494 + 1725 22434 1058 1059 0.08742913620085346 AVLAVVVIGA 10 Unmodified _AVLAVVVIGA_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MSMS UPN48_class_I_Rep_2 6 456.3011779785156 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 46.16 1 49.918 49.418 50.418 3.7579 0 0 0 0.53105 1 8989 8989 4.3292 0 1 1726 5687 1059 1060 2194 2194 0.1262842283365444 AVLGTLLPV 9 Unmodified _AVLGTLLPV_ 0 0 0 ENST00000357635.9_1_15:75194880-75195063:-|nuORF ENST00000357635.9_1_15:75194880-75195063:-|nuORF ENST00000357635.9_1_15:75194880-75195063:-|nuORF MSMS UPN47_class_I_Rep_1 2 441.7881164550781 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 40.163 1 43.83 43.33 44.33 3.6668 0 0 0 0.38299 1 7934 7934 4.756 2.4533 1 1727 6293 1060 1061 2195 2195 0.11308733942337312 AVLLLALASI 10 Unmodified _AVLLLALASI_ 0 0 0 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 MULTI-MSMS UPN48_class_I_Rep_1 5 492.3289489746094 2 492.328611 982.642668 0.25531 0.0001257 0.15388 7.5759E-05 0.40919 0.00020145 492.32846225355684 65.715 0.5062 69.166 68.924 69.431 3.4516 42 34 2 0 0 0 0.54078 2 15039 14981;15039 6.7232 1.4263 1 95965 1728 4715 1061 1062 2196;2197 2197 0.15065265039208953 AVLLLALASI 10 Unmodified _AVLLLALASI_ 0 0 0 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 MSMS UPN48_class_I_Rep_2 6 492.3278503417969 2 492.328611 982.642668 NaN NaN NaN NaN NaN NaN NaN 65.46 1 68.939 68.439 69.439 3.4792 0 0 0 0.53105 1 14882 14882 6.2058 0.9089 1 1729 4715 1061 1062 2198 2198 0.15065265039208953 AVLLLALASI 10 Unmodified _AVLLLALASI_ 0 0 0 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 MSMS UPN48_class_I_Rep_3 7 492.328857421875 2 492.328611 982.642668 NaN NaN NaN NaN NaN NaN NaN 65.617 1 69.125 68.625 69.625 3.5077 0 0 0 0.53105 1 14842 14842 6.2058 0.9089 1 1730 4715 1061 1062 2199 2199 0.15065265039208953 AVLSHLFLSVP 11 Unmodified _AVLSHLFLSVP_ 0 0 0 REV__LTR13_dup255|chr11:2285884-2286892:-|1.110408205091761|0.1487124968312807|2.9|151.0|21|2|sense REV__LTR13_dup255|chr11:2285884-2286892:-|1.110408205091761|0.1487124968312807|2.9|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 591.8455810546875 2 591.847699 1181.68084 NaN NaN NaN NaN NaN NaN NaN 108.45 1 112.08 111.58 112.58 3.6313 0 0 0 0.38417 1 26243 26243 5.7319 1.7875 1 + 1731 30831 1062 1063 2200 2200 0.09727150953881392 AVLSHQKRIM 10 Unmodified _AVLSHQKRIM_ 0 0 0 REV__Tigger1_dup4766|chr6:36035196-36035941:+|1.080834215359558|0.0061190900736829|7.46|151.0|23|3|sense REV__Tigger1_dup4766|chr6:36035196-36035941:+|1.080834215359558|0.0061190900736829|7.46|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 591.8458251953125 2 591.842425 1181.6703 0.50967 0.00030164 3.3339 0.0019731 3.8436 0.0022748 591.8454850467859 108.45 0.10683 112.08 112.03 112.13 3.6355 25 7 5 0 0 0 0.56033 1 26655 26655 3.5965 0.31518 1 3458500 + 1732 32454 1063 1064 2201 2201 0.08672845027808762 AVLSHQKRIM 10 Unmodified _AVLSHQKRIM_ 0 0 0 REV__Tigger1_dup4766|chr6:36035196-36035941:+|1.080834215359558|0.0061190900736829|7.46|151.0|23|3|sense REV__Tigger1_dup4766|chr6:36035196-36035941:+|1.080834215359558|0.0061190900736829|7.46|151.0|23|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 591.842425 1181.6703 0.5163 0.00030557 3.2309 0.0019122 3.7472 0.0022178 591.8452564437986 108.4 0.086014 112.08 112.05 112.14 3.6751 -0.0033969 -8.0026E-05 NaN 3.5965 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1942600 + 1733 32454 1063 1064 0.08672845027808762 AVLSILDVL 9 Unmodified _AVLSILDVL_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS UPN48_class_I_Rep_2 6 471.7970886230469 2 471.797143 941.579734 0.20903 9.8621E-05 -0.38429 -0.00018131 -0.17526 -8.2687E-05 471.79687130499764 69.537 0.98466 73.059 72.722 73.707 3.5216 160 82 3 0 0 0 0.33654 1 16065 16065 11.64 3.7301 1 524240 1734 1314 1064 1065 2202 2202 0.10660699251184269 AVMSTGEEIPY 11 Unmodified _AVMSTGEEIPY_ 0 0 0 ENSG00000109205|ENST00000683306|ODAM ENSG00000109205|ENST00000683306|ODAM ENSG00000109205|ENST00000683306|ODAM MSMS UPN48_class_I_Rep_1 5 598.780029296875 2 598.778822 1195.54309 NaN NaN NaN NaN NaN NaN NaN 26.735 1 30.298 29.798 30.798 3.5629 0 0 0 0.38417 1 3332 3332 1.1933 0.39971 1 1735 1892 1065 1066 2203 2203 -0.04685965427688643 AVNSLISKY 9 Unmodified _AVNSLISKY_ 0 0 0 nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1 nc|ENSG00000014123|O94874-3|UFL1 nc|ENSG00000014123|O94874-3|UFL1 MSMS UPN46_class_I_Rep_3 1 497.7822570800781 2 497.782025 993.549496 NaN NaN NaN NaN NaN NaN NaN 47.825 1 47.825 47.325 48.325 0 0 0 0 0.18341 1 9919 9919 17.443 1.2935 1 1736 793 1066 1067 2204 2204 0.05246340585995313 AVPDLPHY 8 Unmodified _AVPDLPHY_ 0 0 0 REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MSMS UPN48_class_I_Rep_1 5 456.0348815917969 2 456.23471 910.454868 NaN NaN NaN NaN NaN NaN NaN 38.558 1 42.062 41.562 42.562 3.5048 0 0 0 0.40738 1 6696 6696 0.79363 0 1 + 1737 18357 1067 1068 2205 2205 -0.0039417316535264035 AVQKAIAHY 9 Unmodified _AVQKAIAHY_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENSG00000117226|ENST00000370481|GBP3 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS UPN46_class_I_Rep_3 1 500.7821350097656 2 500.782359 999.550165 -0.026349 -1.3195E-05 -0.16352 -8.189E-05 -0.18987 -9.5085E-05 500.78220867107296 26.47 0.71399 26.47 26.227 26.94 0 83 61 2 0 0 0 0.28552 1 3804 3804 14.838 7.549 1 87098 1738 3671 1068 1069 2206 2206 0.05037180025692578 AVQLRPLG 8 Unmodified _AVQLRPLG_ 0 0 0 REV__MLT1A0-int_dup515|chr8:120684955-120686267:-|1.660840806194272|0.0442254218825457|5.23|151.0|39|1|anti-sense REV__MLT1A0-int_dup515|chr8:120684955-120686267:-|1.660840806194272|0.0442254218825457|5.23|151.0|39|1|anti-sense MSMS UPN47_class_I_Rep_2 3 427.2643127441406 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 52.123 1 55.456 54.956 55.956 3.3332 0 0 0 0.39819 1 11605 11605 8.5933 0 1 + 1739 31604 1069 1070 2207 2207 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.26434326171875 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 52.245 1 55.578 55.078 56.078 3.3332 0 0 0 0.40404 1 11641 11641 5.2307 0 1 + 1740 22672 1070 1071 2208 2208 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2643127441406 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 52.367 1 55.701 55.201 56.201 3.3332 0 0 0 0.40404 1 11677 11677 5.2307 0 1 + 1741 22672 1070 1071 2209 2209 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 52.655 1 55.988 55.488 56.488 3.3332 0 0 0 0.40404 1 11760 11760 5.2307 0 1 + 1742 22672 1070 1071 2210 2210 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2641906738281 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 52.789 1 56.115 55.615 56.615 3.3266 0 0 0 0.40404 1 11800 11800 5.2307 0 1 + 1743 22672 1070 1071 2211 2211 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 52.935 1 56.262 55.762 56.762 3.3266 0 0 0 0.40404 1 11845 11845 5.2307 0 1 + 1744 22672 1070 1071 2212 2212 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.26422119140625 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 53.105 1 56.432 55.932 56.932 3.3266 0 0 0 0.40404 1 11898 11898 5.2307 0 1 + 1745 22672 1070 1071 2213 2213 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2643127441406 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 53.254 1 56.581 56.081 57.081 3.3266 0 0 0 0.40404 1 11944 11944 5.2307 0 1 + 1746 22672 1070 1071 2214 2214 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 53.573 1 56.9 56.4 57.4 3.3266 0 0 0 0.40404 1 12042 12042 5.2307 0 1 + 1747 22672 1070 1071 2215 2215 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 53.729 1 57.056 56.556 57.556 3.3266 0 0 0 0.40404 1 12090 12090 5.2307 0 1 + 1748 22672 1070 1071 2216 2216 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_2 3 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 54.571 1 57.889 57.389 58.389 3.3187 0 0 0 0.40404 1 12348 12348 5.2307 0 1 + 1749 22672 1070 1071 2217 2217 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_3 4 427.2642822265625 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 51.474 1 54.691 54.191 55.191 3.2163 0 0 0 0.40404 1 11459 11459 5.2307 0 1 + 1750 22672 1070 1071 2218 2218 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_3 4 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 51.611 1 54.827 54.327 55.327 3.2163 0 0 0 0.40404 1 11501 11501 5.2307 0 1 + 1751 22672 1070 1071 2219 2219 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_3 4 427.2642517089844 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 51.756 1 54.962 54.462 55.462 3.2055 0 0 0 0.40404 1 11545 11545 5.2307 0 1 + 1752 22672 1070 1071 2220 2220 0.08597812342554789 AVQLVAPR 8 Unmodified _AVQLVAPR_ 0 0 0 REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF REV__ENST00000497973.5_1_1:46032543-46034819:+|nuORF MSMS UPN47_class_I_Rep_3 4 427.2643127441406 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 51.906 1 55.111 54.611 55.611 3.2055 0 0 0 0.40404 1 11591 11591 5.2307 0 1 + 1753 22672 1070 1071 2221 2221 0.08597812342554789 AVQQPSTQVP 10 Unmodified _AVQQPSTQVP_ 0 0 0 ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1 ENSG00000102804|ENST00000458659|TSC22D1 ENSG00000102804|ENST00000458659|TSC22D1 MULTI-MSMS UPN48_class_I_Rep_3 7 528.3565063476562 2 527.780013 1053.54547 0.36698 0.00019368 -2.4015 -0.0012675 -2.0346 -0.0010738 527.7797704766313 31.832 0.50879 35.533 35.22 35.728 3.7015 95 57 2 0 0 0 0.56189 1 4808 4808 2.4985 0.65425 1 93504 1754 1626 1071 1072 2222 2222 0.02084251092287559 AVRGLEWLRGS 11 Unmodified _AVRGLEWLRGS_ 0 0 0 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 MSMS UPN48_class_I_Rep_3 7 622.3480834960938 2 622.348929 1242.6833 NaN NaN NaN NaN NaN NaN NaN 106.31 1 110 109.5 110.5 3.6899 0 0 0 0.38417 1 25073 25073 1.0715 0 1 1755 5802 1072 1073 2223 2223 0.071669994115382 AVRHEKVGL 9 Unmodified _AVRHEKVGL_ 0 0 0 REV__L1MC4_dup17320|chr12:11206341-11207827:+|2.052254865192655|0.0086118365573146|7.9|151.0|30|2|sense REV__L1MC4_dup17320|chr12:11206341-11207827:+|2.052254865192655|0.0086118365573146|7.9|151.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 504.8001708984375 2 504.801083 1007.58761 NaN NaN NaN NaN NaN NaN NaN 63.042 1 63.042 62.542 63.542 0 0 0 0 0.381 1 14134 14134 5.2307 0 1 + 1756 26840 1073 1074 2224 2224 0.08412271291331308 AVRRREEI 8 Unmodified _AVRRREEI_ 0 0 0 ENST00000582740.1_1_17:56693632-56725398:-|nuORF ENST00000582740.1_1_17:56693632-56725398:-|nuORF ENST00000582740.1_1_17:56693632-56725398:-|nuORF MSMS UPN47_class_I_Rep_3 4 514.8034057617188 2 514.801614 1027.58868 NaN NaN NaN NaN NaN NaN NaN 54.496 1 57.682 57.182 58.182 3.1856 0 0 0 0.38444 1 12379 12379 13.906 2.2658 1 1757 7564 1074 1075 2225 2225 0.0759848566024175 AVRRTALAP 9 Unmodified _AVRRTALAP_ 0 0 0 REV__nc|ENSG00000132297|C9JL84-2|HHLA1 REV__nc|ENSG00000132297|C9JL84-2|HHLA1 MULTI-MSMS UPN48_class_I_Rep_2 6 477.79571533203125 2 477.795801 953.577048 0.22791 0.00010889 0.5265 0.00025156 0.75441 0.00036046 477.79573647154115 107.57 0.10114 111.25 111.21 111.31 3.6783 25 14 2 0 0 0 0.21527 1 25426 25426 19.257 3.4098 1 3445800 + 1758 19005 1075 1076 2226 2226 0.09840288636883088 AVRRTALAP 9 Unmodified _AVRRTALAP_ 0 0 0 REV__nc|ENSG00000132297|C9JL84-2|HHLA1 REV__nc|ENSG00000132297|C9JL84-2|HHLA1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 477.795801 953.577048 0.33874 0.00016185 0.64923 0.0003102 0.98797 0.00047205 477.79553508996685 107.56 0.06559 111.1 111.08 111.14 3.5345 -0.11499 0.00020155 NaN 19.257 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1429300 + 1759 19005 1075 1076 0.09840288636883088 AVRRTALAP 9 Unmodified _AVRRTALAP_ 0 0 0 REV__nc|ENSG00000132297|C9JL84-2|HHLA1 REV__nc|ENSG00000132297|C9JL84-2|HHLA1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 477.795801 953.577048 0.21728 0.00010382 0.27088 0.00012943 0.48816 0.00023324 477.79558925888426 107.57 0.11195 111.25 111.21 111.32 3.6813 0.038277 -0.00016 NaN 19.257 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4111900 + 1760 19005 1075 1076 0.09840288636883088 AVRTVQRRGRP 11 Unmodified _AVRTVQRRGRP_ 0 0 0 ENST00000354371.6_1_2:237994566-237994623:+|nuORF ENST00000354371.6_1_2:237994566-237994623:+|nuORF ENST00000354371.6_1_2:237994566-237994623:+|nuORF MSMS UPN48_class_I_Rep_1 5 648.3927612304688 2 648.391993 1294.76943 NaN NaN NaN NaN NaN NaN NaN 107.38 1 111.01 110.51 111.51 3.6299 0 0 0 0.20157 1 25887 25887 17.443 1.2935 1 1761 6278 1076 1077 2227 2227 0.13384004036925035 AVRVLTRP 8 Unmodified _AVRVLTRP_ 0 0 0 REV__L1PA12_dup174|chr2:95835031-95836001:+|1.2036562852867807|0.1859455855473509|2.69|151.0|43|3|anti-sense REV__L1PA12_dup174|chr2:95835031-95836001:+|1.2036562852867807|0.1859455855473509|2.69|151.0|43|3|anti-sense MSMS UPN48_class_I_Rep_1 5 456.3005676269531 2 456.292894 910.571235 NaN NaN NaN NaN NaN NaN NaN 46.247 1 49.766 49.266 50.266 3.5192 0 0 0 0.40472 1 9009 9009 4.3292 0 1 + 1762 29063 1077 1078 2228 2228 0.11237190125211782 AVSESSMAAHW 11 Unmodified _AVSESSMAAHW_ 0 0 0 ENST00000608357.1_1_1:113060547-113060847:-|nuORF ENST00000608357.1_1_1:113060547-113060847:-|nuORF ENST00000608357.1_1_1:113060547-113060847:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 588.2606811523438 2 588.26113 1174.50771 0.04017 2.363E-05 -0.68877 -0.00040518 -0.6486 -0.00038155 588.2606669126162 42.976 0.81294 46.663 46.225 47.038 3.6875 113 57 3 0 0 0 0.65271 1 8801 8801 2.9952 2.9952 1 148830 1763 7696 1078 1079 2229 2229 -0.07256583164848962 AVSKFQKL 8 Unmodified _AVSKFQKL_ 0 0 0 ENST00000557795.5_1_15:65275928-65281037:-|nuORF ENST00000557795.5_1_15:65275928-65281037:-|nuORF ENST00000557795.5_1_15:65275928-65281037:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 460.78253173828125 2 460.781828 919.549102 0.18678 8.6065E-05 1.7648 0.0008132 1.9516 0.00089926 460.78244617656185 44.729 0.078644 44.729 44.7 44.778 0 5 3 2 0 0 0 0.82752 1 9048 9048 8.5933 0 1 844580 1764 7442 1079 1080 2230 2230 0.08610965656805547 AVSLILYRP 9 Unmodified _AVSLILYRP_ 0 0 0 REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|225|3|anti-sense REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|225|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.31640625 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.41 1 110.94 110.44 111.44 3.5345 0 0 0 0.15455 1 25987 25987 19.257 3.4098 1 + 1765 24980 1080 1081 2231 2231 0.10343210236646883 AVSPVEFWL 9 Unmodified _AVSPVEFWL_ 0 0 0 REV__L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|354|3|anti-sense REV__L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|354|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 524.7789916992188 2 524.279118 1046.54368 0.34336 0.00018001 -4.1341 -0.0021674 -3.7908 -0.0019874 524.7786779486755 40.118 0.14948 43.769 43.681 43.831 3.6509 19 12 2 0 0 0 0.41259 1 7103 7103 7.2892 0.56607 1 42423 + 1766 29546 1081 1082 2232 2232 0.022272420743320254 AVTDAIMSR 9 Oxidation (M) _AVTDAIM(Oxidation (M))SR_ AVTDAIM(1)SR AVTDAIM(41)SR 0 0 1 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS UPN46_class_I_Rep_3 1 490.24749755859375 2 490.247492 978.48043 0.071237 3.4924E-05 -0.11066 -5.4251E-05 -0.039423 -1.9327E-05 490.2474673660616 31.692 0.56247 31.692 31.441 32.004 0 53 41 2 0 0 0 0.071184 1 5332 5332 40.725 24.576 1 79378 1767 3923 1082 1083 2233 2233 124 -0.00967066705209163 AVTEEVWMY 9 Unmodified _AVTEEVWMY_ 0 0 0 REV__ENSG00000274209|ENST00000620264|ANTXRL REV__ENSG00000274209|ENST00000620264|ANTXRL MULTI-MSMS UPN47_class_I_Rep_3 4 564.7611083984375 2 564.257525 1126.5005 0.4463 0.00025183 1.7478 0.0009862 2.1941 0.001238 564.2583225972191 70.636 0.42702 73.847 73.565 73.992 3.2113 52 36 2 0 0 0 0.46869 1 17236 17236 3.9444 0.66309 1 67898 + 1768 21425 1083 1084 2234 2234 -0.05769315765246574 AVTEWQMK 8 Unmodified _AVTEWQMK_ 0 0 0 REV__ENST00000607780.5_1_2:96685347-96687379:+|nuORF REV__ENST00000607780.5_1_2:96685347-96687379:+|nuORF MSMS UPN47_class_I_Rep_1 2 496.7474365234375 2 496.747127 991.479702 NaN NaN NaN NaN NaN NaN NaN 33.31 1 37.008 36.508 37.508 3.6983 0 0 0 0.40625 1 5849 5849 2.3027 0.24298 1 + 1769 23236 1084 1085 2235 2235 -0.01637861354265624 AVTHSLLLC 9 Unmodified _AVTHSLLLC_ 0 0 0 L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|25|3|sense L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|25|3|sense L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 478.76336669921875 2 478.76532 955.516088 NaN NaN NaN NaN NaN NaN NaN 61.99 1 65.249 64.749 65.749 3.2594 0 0 0 0.39428 1 14609 14609 2.0598 0.21551 1 1770 10311 1085 1086 2236 2236 0.0365501554246066 AVTKYKQRNGW 11 Unmodified _AVTKYKQRNGW_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60;ENSG00000116747.13,RO60,chr1,+,I3.1,193069635,193070553|23|3.7|2|intron;nc|ENSG00000116747|P10155-2|RO60;ENSG00000116747.13,RO60,chr1,+,I3.1,193069635,193070553|23|3.7|1|intron nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS UPN48_class_I_Rep_1 5 450.9134826660156 3 450.914083 1349.72042 0.067097 3.0255E-05 -0.63717 -0.00028731 -0.57008 -0.00025706 450.91377318783486 32.745 0.77957 36.271 35.879 36.659 3.5266 148 86 2 0 0 0 0.54468 1 4992 4992 6.6235 0.75532 1 177430 1771 2199 1086 1087 2237 2237 0.05954670957316921 AVTKYKQRNGW 11 Unmodified _AVTKYKQRNGW_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60;ENSG00000116747.13,RO60,chr1,+,I3.1,193069635,193070553|23|3.7|2|intron;nc|ENSG00000116747|P10155-2|RO60;ENSG00000116747.13,RO60,chr1,+,I3.1,193069635,193070553|23|3.7|1|intron nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 450.914083 1349.72042 0.14871 6.7055E-05 -0.79868 -0.00036013 -0.64997 -0.00029308 450.9136802513253 32.604 0.73434 36.254 35.892 36.627 3.6497 0.028742 -0.00011062 NaN 6.6235 162 86 2 NaN NaN NaN NaN 0 NaN NaN 0 219940 1772 2199 1086 1087 0.05954670957316921 AVTLSGTGLIY 11 Unmodified _AVTLSGTGLIY_ 0 0 0 L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|154|3|anti-sense L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|154|3|anti-sense L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|154|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.807861328125 2 547.808239 1093.60193 0.0017291 9.472E-07 -0.5587 -0.00030606 -0.55698 -0.00030512 547.8078524200174 36.824 0.68163 40.493 40.2 40.882 3.6692 95 58 2 0 0 0 0.65559 1 6849 6849 2.7352 0.23671 1 148430 1773 13781 1087 1088 2238 2238 0.058868789289590495 AVTRGLDSR 9 Unmodified _AVTRGLDSR_ 0 0 0 REV__HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|17|1|sense REV__HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|17|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7723693847656 2 487.772522 973.530492 -0.27809 -0.00013564 -0.090803 -4.4291E-05 -0.36889 -0.00017994 487.77246455873075 16.183 1.6642 16.183 15.587 17.251 0 384 197 3 0 0 0 0.12096 1 991 991 29.841 0 1 297570 + 1774 23806 1088 1089 2239 2239 0.042668040149465014 AVTVWYVF 8 Unmodified _AVTVWYVF_ 0 0 0 REV__L1MCa_dup3078|chr7:45059766-45061445:-|4.945543081050961|0.186225197556633|4.73|151.0|51|3|sense REV__L1MCa_dup3078|chr7:45059766-45061445:-|4.945543081050961|0.186225197556633|4.73|151.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.762939453125 2 492.763104 983.511654 0.0061938 3.0521E-06 -0.27797 -0.00013697 -0.27178 -0.00013392 492.7627780843134 45.374 0.97491 48.618 48.263 49.238 3.2441 111 60 3 0 0 0 0.82752 1 9701 9701 2.5775 0 1 122690 + 1775 27198 1089 1090 2240 2240 0.019238743911841993 AVVGLQKPVKK 11 Unmodified _AVVGLQKPVKK_ 0 0 0 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 MSMS UPN48_class_I_Rep_1 5 583.884033203125 2 583.884616 1165.75468 NaN NaN NaN NaN NaN NaN NaN 108.14 1 111.77 111.27 112.27 3.6313 0 0 0 0.38417 1 26139 26139 5.7319 2.1354 1 + 1776 19828 1090 1091 2241 2241 0.1784311911619625 AVVKVQAQVR 10 Unmodified _AVVKVQAQVR_ 0 0 0 nc|ENSG00000214686|A8MYZ5|IQCF6;ENSG00000214686|ENST00000667863|IQCF6 nc|ENSG00000214686|A8MYZ5|IQCF6 nc|ENSG00000214686|A8MYZ5|IQCF6 MSMS UPN46_class_I_Rep_3 1 549.3417358398438 2 549.343115 1096.67168 NaN NaN NaN NaN NaN NaN NaN 108.2 1 108.2 107.7 108.7 0 0 0 0 0.53105 1 26443 26443 10.074 1.9184 1 1777 5619 1091 1092 2242 2242 0.1272080238820763 AVVLINRAL 9 Unmodified _AVVLINRAL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS UPN47_class_I_Rep_1 2 484.81610107421875 2 484.816202 967.617851 0.15155 7.3474E-05 -0.096046 -4.6565E-05 0.055505 2.691E-05 484.8161048539288 61.428 1.3966 64.809 64.429 65.825 3.3815 169 101 2 0 0 0 0.28552 1 14521 14521 14.838 4.0143 1 870760 1778 5025 1092 1093 2243 2243 0.13274629956515582 AVVLPVTSP 9 Unmodified _AVVLPVTSP_ 0 0 0 REV__L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense REV__L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.7681579589844 2 441.768386 881.522219 -0.077464 -3.4221E-05 -0.089571 -3.957E-05 -0.16703 -7.3791E-05 441.7682019061066 96.721 0.98116 100.2 99.85 100.83 3.4791 304 141 3 0 0 0 0.3898 1 23740 23740 8.5933 3.8373 1 3612000 + 1779 25131 1093 1094 2244 2244 0.07671857045602337 AVVPFLPLQR 10 Unmodified _AVVPFLPLQR_ 0 0 0 ENST00000496460.5_1_9:130494315-130497584:-|nuORF;ENSG00000160404|ENST00000373284|TOR2A ENST00000496460.5_1_9:130494315-130497584:-|nuORF ENST00000496460.5_1_9:130494315-130497584:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 570.310546875 2 570.350409 1138.68626 0.44783 0.00025542 0.01446 8.247E-06 0.46229 0.00026367 570.3502051169157 69.038 0.48299 72.493 72.199 72.682 3.4548 59 37 3 0 0 0 0.84575 1 15989 15989 10.074 4.3421 1 122970 1780 3872 1094 1095 2245 2245 0.12246874536367613 AVVPFLPLQR 10 Unmodified _AVVPFLPLQR_ 0 0 0 ENST00000496460.5_1_9:130494315-130497584:-|nuORF;ENSG00000160404|ENST00000373284|TOR2A ENST00000496460.5_1_9:130494315-130497584:-|nuORF ENST00000496460.5_1_9:130494315-130497584:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 570.3108520507812 2 570.350409 1138.68626 0.48835 0.00027853 0.24395 0.00013914 0.7323 0.00041767 570.3503789023657 68.891 0.5878 72.399 72.074 72.662 3.5083 56 39 2 0 0 0 0.84575 1 15869 15869 10.074 4.777 1 128330 1781 3872 1094 1095 2246 2246 0.12246874536367613 AVVPFLPLQR 10 Unmodified _AVVPFLPLQR_ 0 0 0 ENST00000496460.5_1_9:130494315-130497584:-|nuORF;ENSG00000160404|ENST00000373284|TOR2A ENST00000496460.5_1_9:130494315-130497584:-|nuORF ENST00000496460.5_1_9:130494315-130497584:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 570.3106689453125 2 570.350409 1138.68626 0.52439 0.00029909 0.20219 0.00011532 0.72658 0.00041441 570.3503970191022 68.777 0.52194 72.286 72.058 72.58 3.5093 46 37 2 0 0 0 0.84575 1 15796 15796 10.074 3.8681 1 109190 1782 3872 1094 1095 2247 2247 0.12246874536367613 AVWPAGSFQLS 11 Unmodified _AVWPAGSFQLS_ 0 0 0 LTR16A_dup3983|chr20:35267946-35268352:-|1.6371126719658622|0.2274112901683255|2.85|151.0|1|1|sense LTR16A_dup3983|chr20:35267946-35268352:-|1.6371126719658622|0.2274112901683255|2.85|151.0|1|1|sense LTR16A_dup3983|chr20:35267946-35268352:-|1.6371126719658622|0.2274112901683255|2.85|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.7978515625 2 581.798206 1161.58186 0.53696 0.0003124 -0.34833 -0.00020266 0.18863 0.00010974 581.7981978426435 66.657 0.26926 70.165 70.058 70.328 3.5077 19 15 2 0 0 0 0.62748 1 15187 15187 4.5289 0.58447 1 97924 1783 15572 1095 1096 2248 2248 0.007531279890145015 AVYDFFIGR 9 Unmodified _AVYDFFIGR_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS UPN48_class_I_Rep_1 5 544.2823486328125 2 544.282192 1086.54983 0.4745 0.00025826 -0.17977 -9.7848E-05 0.29473 0.00016041 544.2820820062398 68.125 0.68101 71.577 71.248 71.929 3.4517 135 57 3 0 0 0 0.048662 5 15694 15654;15694;15730;15768;15807 49.554 31.408 1 376250 1784 3327 1096 1097 2249;2250;2251;2252;2253 2250 0.010017603058486202 AVYDFFIGR 9 Unmodified _AVYDFFIGR_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS UPN48_class_I_Rep_2 6 544.283935546875 2 544.282192 1086.54983 0.49428 0.00026903 0.09624 5.2382E-05 0.59052 0.00032141 544.2822021173698 67.874 0.7702 71.382 71.124 71.894 3.5083 133 69 3 0 0 0 0.043452 7 15649 15540;15565;15587;15625;15649;15665;15700 51.63 33.483 1 285810 1785 3327 1096 1097 2254;2255;2256;2257;2258;2259;2260 2258 0.010017603058486202 AVYDFFIGR 9 Unmodified _AVYDFFIGR_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS UPN48_class_I_Rep_3 7 544.2822875976562 2 544.282192 1086.54983 0.54881 0.00029871 -0.030239 -1.6459E-05 0.51857 0.00028225 544.2820827537315 67.855 0.68778 71.362 71.067 71.755 3.5077 155 63 3 0 0 0 0.048662 5 15494 15452;15494;15539;15576;15618 49.554 31.408 1 334580 1786 3327 1096 1097 2261;2262;2263;2264;2265 2262 0.010017603058486202 AVYDRILDL 9 Unmodified _AVYDRILDL_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS UPN48_class_I_Rep_1 5 539.3004150390625 2 539.300581 1076.58661 0.43828 0.00023637 -0.17884 -9.6446E-05 0.25945 0.00013992 539.3003882398851 67.383 0.73383 70.835 70.376 71.11 3.4516 100 49 3 0 0 0 0.14474 3 15467 15425;15467;15528 26.021 4.4837 1 365790 1787 1162 1097 1098 2266;2267;2268 2267 0.05138012131783398 AVYDRILDL 9 Unmodified _AVYDRILDL_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS UPN48_class_I_Rep_2 6 539.30029296875 2 539.300581 1076.58661 0.4854 0.00026178 -0.17874 -9.6395E-05 0.30666 0.00016538 539.3003197075935 67.107 0.77554 70.603 70.234 71.009 3.4964 111 53 3 0 0 0 0.13455 3 15394 15355;15394;15433 27.223 10.11 1 290240 1788 1162 1097 1098 2269;2270;2271 2270 0.05138012131783398 AVYDRILDL 9 Unmodified _AVYDRILDL_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS UPN48_class_I_Rep_3 7 539.3006591796875 2 539.300581 1076.58661 0.60793 0.00032786 -0.22627 -0.00012203 0.38166 0.00020583 539.3002417224635 66.982 0.75212 70.49 70.136 70.888 3.5077 98 51 2 0 0 0 0.10225 3 15275 15231;15275;15316 33.445 9.6551 1 271760 1789 1162 1097 1098 2272;2273;2274 2273 0.05138012131783398 AVYIRMHTES 10 Unmodified _AVYIRMHTES_ 0 0 0 REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|17|3|sense REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|17|3|sense MSMS UPN48_class_I_Rep_3 7 603.8015747070312 2 603.800423 1205.58629 NaN NaN NaN NaN NaN NaN NaN 31.121 1 34.836 34.336 35.336 3.7146 0 0 0 0.53105 1 4566 4566 1.6526 0 1 + 1790 28231 1098 1099 2275 2275 -0.008277308597371302 AWAPHLPL 8 Unmodified _AWAPHLPL_ 0 0 0 REV__AluJb_dup50812|chr7:101994808-101995120:+|1.3142155121996075|0.0097707590132619|7.07|151.0|4|1|sense REV__AluJb_dup50812|chr7:101994808-101995120:+|1.3142155121996075|0.0097707590132619|7.07|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 452.75701904296875 2 452.755613 903.496673 NaN NaN NaN NaN NaN NaN NaN 18.193 1 21.724 21.224 22.224 3.5313 0 0 0 0.40738 1 1183 1183 0.79363 0 1 + 1791 16951 1099 1100 2276 2276 0.041064273138545104 AWAYQIRL 8 Unmodified _AWAYQIRL_ 0 0 0 REV__ENSG00000132436|ENST00000433017|FIGNL1 REV__ENSG00000132436|ENST00000433017|FIGNL1 MULTI-SECPEP UPN48_class_I_Rep_1 5 510.7591247558594 2 510.784902 1019.55525 0.25743 0.00013149 -1.0449 -0.00053373 -0.78749 -0.00040224 510.78366521480496 53.471 0.056007 56.99 56.951 57.007 3.5192 5 4 2 0 0 0 0.72333 1 11216 11216 5.2307 0.47466 1 24543 + 1792 19016 1100 1101 2277 2277 0.046254838883101 AWCGGNFLED 10 Unmodified _AWCGGNFLED_ 0 0 0 nc|ENSG00000292366|P51809-3|VAMP7 nc|ENSG00000292366|P51809-3|VAMP7 nc|ENSG00000292366|P51809-3|VAMP7 MULTI-MSMS UPN47_class_I_Rep_3 4 556.2288208007812 2 556.229299 1110.44404 0.46077 0.00025629 0.25742 0.00014318 0.71819 0.00039948 556.2293500792522 76.865 0.68946 80.134 79.817 80.506 3.269 165 73 4 0 0 0 0.56333 1 19114 19114 1.4819 0.68827 1 256060 1793 16860 1101 1102 2278 2278 -0.10675943601927429 AWFGDSLTSL 10 Unmodified _AWFGDSLTSL_ 0 0 0 ENST00000469445.1_1_2:27262901-27263090:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 ENST00000469445.1_1_2:27262901-27263090:+|nuORF ENST00000469445.1_1_2:27262901-27263090:+|nuORF MSMS UPN47_class_I_Rep_2 3 548.7708129882812 2 548.769114 1095.52368 NaN NaN NaN NaN NaN NaN NaN 70.68 1 73.963 73.463 74.463 3.2828 0 0 0 0.53105 1 17235 17235 9.3831 0.63772 1 1794 2295 1102 1103 2279 2279 -0.02026553656287433 AWFRKVGK 8 Unmodified _AWFRKVGK_ 0 0 0 MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|29|1|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|29|1|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|29|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2957458496094 2 496.295436 990.57632 0.18209 9.0369E-05 0.18511 9.1867E-05 0.36719 0.00018224 496.2954918670905 36.171 0.1014 36.171 36.107 36.209 0 13 7 2 0 0 0 0.72333 1 6665 6665 0.79363 0.10326 1 257460 1795 16041 1103 1104 2280 2280 0.08065493987851369 AWFRRRIFD 9 Unmodified _AWFRRRIFD_ 0 0 0 REV__nc|ENSG00000136811|Q5BJF6-7|ODF2 REV__nc|ENSG00000136811|Q5BJF6-7|ODF2 MSMS UPN48_class_I_Rep_1 5 422.9268493652344 3 422.899996 1265.67816 NaN NaN NaN NaN NaN NaN NaN 83.186 1 86.773 86.273 87.273 3.5871 0 0 0 0.40177 1 19887 19887 0.26902 0.1097 1 + 1796 19201 1104 1105 2281 2281 0.055947403395975925 AWGLPPRL 8 Unmodified _AWGLPPRL_ 0 0 0 ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF MSMS UPN47_class_I_Rep_1 2 455.2677307128906 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 118.46 1 122.06 121.56 122.56 3.6036 0 0 0 0.40738 1 29396 29396 0.79363 0 1 1797 7135 1105 1106 2282 2282 0.06530116205169634 AWGLPPRL 8 Unmodified _AWGLPPRL_ 0 0 0 ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF MSMS UPN47_class_I_Rep_2 3 454.8673400878906 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 26.573 1 30.068 29.568 30.568 3.4945 0 0 0 0.40738 1 3866 3866 0.79363 0 1 1798 7135 1105 1106 2283 2283 0.06530116205169634 AWGLPPRL 8 Unmodified _AWGLPPRL_ 0 0 0 ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF MSMS UPN48_class_I_Rep_2 6 455.26800537109375 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 114.53 1 118.19 117.69 118.69 3.6616 0 0 0 0.40738 1 27377 27377 0.79363 0 1 1799 7135 1105 1106 2284 2284 0.06530116205169634 AWGLPPRL 8 Unmodified _AWGLPPRL_ 0 0 0 ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF ENST00000502959.5_1_4:156680203-156680948:+|nuORF MSMS UPN48_class_I_Rep_3 7 455.26763916015625 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 119.09 1 122.68 122.18 123.18 3.5847 0 0 0 0.40738 1 28310 28310 0.79363 0 1 1800 7135 1105 1106 2285 2285 0.06530116205169634 AWGWKLLA 8 Unmodified _AWGWKLLA_ 0 0 0 REV__LTR41_dup879|chr12:65331198-65332123:-|1.3891790515194802|0.2580968413204652|2.43|149.0|18|3|sense REV__LTR41_dup879|chr12:65331198-65332123:-|1.3891790515194802|0.2580968413204652|2.43|149.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 472.7714538574219 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 110.93 1 110.93 110.43 111.43 0 0 0 0 0.40738 1 27335 27335 0.79363 0 1 + 1801 30924 1106 1107 2286 2286 0.05395000347948553 AWGWKLLA 8 Unmodified _AWGWKLLA_ 0 0 0 REV__LTR41_dup879|chr12:65331198-65332123:-|1.3891790515194802|0.2580968413204652|2.43|149.0|18|3|sense REV__LTR41_dup879|chr12:65331198-65332123:-|1.3891790515194802|0.2580968413204652|2.43|149.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 472.7719421386719 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 111.34 1 111.34 110.84 111.84 0 0 0 0 0.40738 1 27447 27447 0.79363 0 1 + 1802 30924 1106 1107 2287 2287 0.05395000347948553 AWIPIGNRKIA 11 Unmodified _AWIPIGNRKIA_ 0 0 0 REV__L1MB8_dup15661|chr20:20400729-20401209:+|1.5373377820389116|0.2667059755809414|2.53|150.0|14|3|sense REV__L1MB8_dup15661|chr20:20400729-20401209:+|1.5373377820389116|0.2667059755809414|2.53|150.0|14|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.8693237304688 2 619.87204 1237.72953 0.65583 0.00040653 -4.1781 -0.0025899 -3.5222 -0.0021833 619.8693274489243 93.302 0.096802 93.302 93.257 93.354 0 9 7 2 0 0 0 0.67113 1 22608 22608 1.3295 0.13619 1 78865 + 1803 26382 1107 1108 2288 2288 0.12017064313681658 AWIPPTREVP 10 Unmodified _AWIPPTREVP_ 0 0 0 nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2 nc|ENSG00000163520|P98095|FBLN2 nc|ENSG00000163520|P98095|FBLN2 MSMS UPN47_class_I_Rep_3 4 583.3215942382812 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 46.684 1 49.928 49.428 50.428 3.2439 0 0 0 0.53105 1 10010 10010 3.5965 0.60125 1 + 1804 4013 1108 1109 2289 2289 0.05341407259970765 AWIPPTREVP 10 Unmodified _AWIPPTREVP_ 0 0 0 nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2 nc|ENSG00000163520|P98095|FBLN2 nc|ENSG00000163520|P98095|FBLN2 MSMS UPN47_class_I_Rep_3 4 583.3222045898438 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 46.997 1 50.241 49.741 50.741 3.2439 0 0 0 0.53105 1 10104 10104 3.5965 0.60125 1 + 1805 4013 1108 1109 2290 2290 0.05341407259970765 AWIREGLEKM 10 Unmodified _AWIREGLEKM_ 0 0 0 nc|ENSG00000132424|Q8TF01-2|PNISR;ENSG00000132424|ENST00000369239|PNISR nc|ENSG00000132424|Q8TF01-2|PNISR nc|ENSG00000132424|Q8TF01-2|PNISR MSMS UPN48_class_I_Rep_2 6 616.8271484375 2 616.82644 1231.63833 NaN NaN NaN NaN NaN NaN NaN 41.601 1 45.352 44.852 45.852 3.7508 0 0 0 0.53105 1 7613 7613 1.1933 0 1 1806 2753 1109 1110 2291 2291 0.03177432554002735 AWLCYLAAI 9 Unmodified _AWLCYLAAI_ 0 0 0 REV__L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|316|3|anti-sense REV__L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|316|3|anti-sense MSMS UPN47_class_I_Rep_2 3 512.269775390625 2 512.270238 1022.52592 NaN NaN NaN NaN NaN NaN NaN 44.873 1 48.228 47.728 48.728 3.3556 0 0 0 0.39326 1 9401 9401 2.3027 0 1 + 1807 29414 1110 1111 2292 2292 0.015562035478183134 AWLDEHTLV 9 Unmodified _AWLDEHTLV_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS UPN48_class_I_Rep_3 7 542.2755126953125 2 542.277106 1082.53966 NaN NaN NaN NaN NaN NaN NaN 74.692 1 78.258 77.758 78.758 3.5659 0 0 0 0.38639 1 17507 17507 3.9444 0.3479 1 1808 1084 1111 1112 2293 2293 0.0016915258061089844 AWLFTRFI 8 Unmodified _AWLFTRFI_ 0 0 0 REV__LTR19-int_dup164|chr14:60096829-60097382:+|2.1732675478144428|0.0933101603046621|4.54|151.0|40|3|anti-sense REV__LTR19-int_dup164|chr14:60096829-60097382:+|2.1732675478144428|0.0933101603046621|4.54|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2987670898438 2 527.297645 1052.58074 NaN NaN NaN NaN NaN NaN NaN 24.172 1 27.941 27.441 28.441 3.769 0 0 0 0.40738 1 2759 2759 0.79363 0 1 + 1809 30865 1112 1113 2294 2294 0.05654958410764266 AWREAMPCKAT 11 Unmodified _AWREAMPCKAT_ 0 0 0 THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|21|2|sense THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|21|2|sense THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 632.30224609375 2 632.302275 1262.59 NaN NaN NaN NaN NaN NaN NaN 61.006 1 64.48 63.98 64.98 3.4737 0 0 0 0.38417 1 13541 13541 0.96228 0.36078 1 1810 32857 1113 1114 2295 2295 -0.030793843575338542 AWRLRLVL 8 Unmodified _AWRLRLVL_ 0 0 0 REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 514.3328247070312 2 513.832186 1025.64982 0.37661 0.00019351 -1.3865 -0.00071241 -1.0099 -0.00051889 513.8314152611812 63.069 0.49364 66.532 66.315 66.808 3.4625 46 32 2 0 0 0 0.82752 1 14195 14195 5.2307 0 1 207290 + 1811 31084 1114 1115 2296 2296 0.13802042430302208 AWRLRLVL 8 Unmodified _AWRLRLVL_ 0 0 0 REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.8324584960938 2 513.832186 1025.64982 0.38088 0.00019571 -1.1351 -0.00058326 -0.75424 -0.00038755 513.8316072038699 62.8 0.21152 66.274 66.115 66.327 3.4738 18 13 2 0 0 0 0.82752 1 14064 14064 5.2307 0 1 75173 + 1812 31084 1114 1115 2297 2297 0.13802042430302208 AWRLRLVL 8 Unmodified _AWRLRLVL_ 0 0 0 REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.8318481445312 2 513.832186 1025.64982 0.37949 0.000195 -0.97215 -0.00049952 -0.59266 -0.00030453 513.8315897370516 62.984 0.47612 66.458 66.306 66.782 3.4738 45 35 2 0 0 0 0.82752 1 14149 14149 5.2307 0 1 249760 + 1813 31084 1114 1115 2298 2298 0.13802042430302208 AWRLRLVL 8 Unmodified _AWRLRLVL_ 0 0 0 REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense REV__MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 514.3334350585938 2 513.832186 1025.64982 0.38088 0.00019571 -1.1351 -0.00058326 -0.75424 -0.00038755 513.8316072038699 62.8 0.21152 66.274 66.115 66.327 3.4738 18 13 2 0 0 0 0.72333 1 14039 14039 5.2307 0 1 75173 + 1814 31084 1114 1115 2299 2299 0.13802042430302208 AWSQTVCTIC 10 Unmodified _AWSQTVCTIC_ 0 0 0 HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|25|1|sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|25|1|sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|25|1|sense MSMS UPN47_class_I_Rep_3 4 556.248046875 2 556.249177 1110.4838 NaN NaN NaN NaN NaN NaN NaN 39.614 1 42.852 42.352 43.352 3.238 0 0 0 0.53105 1 7846 7846 1.3295 0.13619 1 1815 8353 1115 1116 2300 2300 -0.067021399228679 AWSRCRSVHA 10 Unmodified _AWSRCRSVHA_ 0 0 0 REV__LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|35|2|anti-sense REV__LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 586.790771484375 2 586.790724 1171.56689 NaN NaN NaN NaN NaN NaN NaN 42.403 1 45.643 45.143 46.143 3.2394 0 0 0 0.53105 1 8696 8696 1.4819 0.68827 1 + 1816 30873 1116 1117 2301 2301 -0.012026423599763802 AWTELHLKKL 10 Unmodified _AWTELHLKKL_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 MSMS UPN48_class_I_Rep_1 5 619.86962890625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 85.939 1 89.545 89.045 90.045 3.6059 0 0 0 0.53105 1 20575 20575 1.4819 0.28856 1 + 1817 20708 1117 1118 2302 2302 0.1089424221952413 AWTELHLKKL 10 Unmodified _AWTELHLKKL_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 MSMS UPN48_class_I_Rep_3 7 619.8694458007812 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 86.05 1 89.82 89.32 90.32 3.7701 0 0 0 0.53105 1 20427 20427 1.4819 0.28856 1 + 1818 20708 1117 1118 2303 2303 0.1089424221952413 AWTRLYWP 8 Unmodified _AWTRLYWP_ 0 0 0 REV__ENSG00000183011.13,NAA38,chr17,-,I2.1,7866559,7883234|26|13.72|1|intron REV__ENSG00000183011.13,NAA38,chr17,-,I2.1,7866559,7883234|26|13.72|1|intron MSMS UPN47_class_I_Rep_2 3 546.7825927734375 2 546.784902 1091.55525 NaN NaN NaN NaN NaN NaN NaN 51.333 1 54.672 54.172 55.172 3.3386 0 0 0 0.40604 1 11362 11362 2.5775 0.92486 1 + 1819 20770 1118 1119 2304 2304 0.013134838883161137 AWVKISIGHI 10 Unmodified _AWVKISIGHI_ 0 0 0 L1ME4a_dup23967|chr11:118485316-118485801:+|1.0262198784237309|0.0880726274407603|3.54|151.0|5|1|sense L1ME4a_dup23967|chr11:118485316-118485801:+|1.0262198784237309|0.0880726274407603|3.54|151.0|5|1|sense L1ME4a_dup23967|chr11:118485316-118485801:+|1.0262198784237309|0.0880726274407603|3.54|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3351440429688 2 562.334759 1122.65496 0.50405 0.00028344 0.38297 0.00021536 0.88702 0.0004988 562.3345390752212 109.28 0.19094 112.81 112.75 112.94 3.5347 65 24 3 0 0 0 0.53414 1 26863 26863 7.609 1.4032 1 8963200 1820 12860 1119 1120 2305 2305 0.09854301502286944 AWVKISIGHI 10 Unmodified _AWVKISIGHI_ 0 0 0 L1ME4a_dup23967|chr11:118485316-118485801:+|1.0262198784237309|0.0880726274407603|3.54|151.0|5|1|sense L1ME4a_dup23967|chr11:118485316-118485801:+|1.0262198784237309|0.0880726274407603|3.54|151.0|5|1|sense L1ME4a_dup23967|chr11:118485316-118485801:+|1.0262198784237309|0.0880726274407603|3.54|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.33447265625 2 562.334759 1122.65496 0.49269 0.00027706 -0.45019 -0.00025316 0.042498 2.3898E-05 562.3343212586504 109.22 0.75874 112.89 112.81 113.57 3.6715 192 102 2 0 0 0 0.56155 1 26128 26128 2.7352 0.89096 1 3580200 1821 12860 1119 1120 2306 2306 0.09854301502286944 AWVRRVPQR 9 Unmodified _AWVRRVPQR_ 0 0 0 REV__ENST00000242140.9_1_7:29955512-29955764:+|nuORF REV__ENST00000242140.9_1_7:29955512-29955764:+|nuORF MSMS UPN46_class_I_Rep_3 1 584.348388671875 2 584.346523 1166.67849 NaN NaN NaN NaN NaN NaN NaN 43.883 1 43.883 43.383 44.383 0 0 0 0 0.39518 1 8798 8798 1.8442 0 1 + 1822 21508 1120 1121 2307 2307 0.10182160059457601 AWWAQRQH 8 Unmodified _AWWAQRQH_ 0 0 0 LTR1F_dup122|chr14:73416786-73417491:+|1.0006118407869131|0.0101765606840172|6.62|151.0|23|1|anti-sense LTR1F_dup122|chr14:73416786-73417491:+|1.0006118407869131|0.0101765606840172|6.62|151.0|23|1|anti-sense LTR1F_dup122|chr14:73416786-73417491:+|1.0006118407869131|0.0101765606840172|6.62|151.0|23|1|anti-sense MSMS UPN46_class_I_Rep_3 1 541.7678833007812 2 541.767575 1081.5206 NaN NaN NaN NaN NaN NaN NaN 118.93 1 118.93 118.43 119.43 0 0 0 0 0.40738 1 29540 29540 0.79363 0 1 1823 15594 1121 1122 2308 2308 -0.016903391997857398 AWWLWPRI 8 Unmodified _AWWLWPRI_ 0 0 0 REV__L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|88|2|anti-sense REV__L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|88|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.3135986328125 2 564.311087 1126.60762 NaN NaN NaN NaN NaN NaN NaN 47.28 1 50.524 50.024 51.024 3.2439 0 0 0 0.40738 1 10190 10190 0.79363 0.19213 1 + 1824 25482 1122 1123 2309 2309 0.04938067021930692 AWWQGFRR 8 Unmodified _AWWQGFRR_ 0 0 0 MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|16|1|anti-sense MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|16|1|anti-sense MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_1 5 553.7839965820312 2 553.785767 1105.55698 NaN NaN NaN NaN NaN NaN NaN 78.77 1 82.305 81.805 82.805 3.5352 0 0 0 0.40625 1 18782 18782 2.3027 0.4585 1 1825 16413 1123 1124 2310 2310 0.008425376969398712 AWWQGFRR 8 Unmodified _AWWQGFRR_ 0 0 0 MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|16|1|anti-sense MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|16|1|anti-sense MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_3 7 553.7836303710938 2 553.785767 1105.55698 NaN NaN NaN NaN NaN NaN NaN 78.668 1 82.29 81.79 82.79 3.6216 0 0 0 0.40625 1 18627 18627 2.3027 0.4585 1 1826 16413 1123 1124 2311 2311 0.008425376969398712 AWWWAWRI 8 Unmodified _AWWWAWRI_ 0 0 0 REV__AluSc_dup18388|chr9:129931931-129932242:+|1.092852234471562|0.0193175386270695|5.82|151.0|7|2|sense REV__AluSc_dup18388|chr9:129931931-129932242:+|1.092852234471562|0.0193175386270695|5.82|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 587.8031616210938 2 587.800886 1173.58722 NaN NaN NaN NaN NaN NaN NaN 28.213 1 31.844 31.344 32.344 3.6311 0 0 0 0.40746 1 3854 3854 0.69038 0.088878 1 + 1827 17079 1124 1125 2312 2312 0.0073689636212748155 AWYWRRRPKRL 11 Unmodified _AWYWRRRPKRL_ 0 0 0 ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF ENSG00000172935|ENST00000309099|MRGPRF MSMS UPN48_class_I_Rep_2 6 529.9779663085938 3 529.975899 1586.90587 NaN NaN NaN NaN NaN NaN NaN 28.785 1 32.416 31.916 32.916 3.6311 0 0 0 0.38417 1 4004 4004 0.094841 0 1 1828 4599 1125 1126 2313 2313 0.13589118267418598 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.297607421875 2 525.297507 1048.58046 0.31229 0.00016404 -0.21019 -0.00011041 0.1021 5.3632E-05 525.297396314579 52.017 0.77873 55.54 55.383 56.161 3.5227 138 78 2 0 0 0 0.037922 4 10810 10773;10810;10844;10879 53.833 26.204 1 570850 1829 7210 1126 1127 2314;2315;2316;2317 2315 0.05811493900228015 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 525.2974853515625 2 525.297507 1048.58046 0.41929 0.00022025 -0.38679 -0.00020318 0.032498 1.7071E-05 525.2973182841052 52.051 0.70936 55.69 55.37 56.08 3.639 128 73 2 0 0 0 0.037922 8 10758 10722;10739;10758;10776;10795;10828;10866;10870 53.833 25.346 1 493680 1830 7210 1126 1127 2318;2319;2320;2321;2322;2323;2324;2325 2320 0.05811493900228015 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 525.2977294921875 2 525.297507 1048.58046 0.31215 0.00016397 -0.19495 -0.00010241 0.1172 6.1565E-05 525.2973617505448 52.156 0.66466 55.753 55.407 56.072 3.5979 145 73 3 0 0 0 0.025281 5 10780 10670;10707;10744;10780;10819 60.074 32.445 1 488450 1831 7210 1126 1127 2326;2327;2328;2329;2330 2329 0.05811493900228015 AYAILNRF 8 Unmodified _AYAILNRF_ 0 0 0 nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8 nc|ENSG00000124721|Q96JB1-2|DNAH8 nc|ENSG00000124721|Q96JB1-2|DNAH8 MSMS UPN48_class_I_Rep_2 6 484.27191162109375 2 484.271627 966.528701 NaN NaN NaN NaN NaN NaN NaN 69.497 1 73.019 72.519 73.519 3.5216 0 0 0 0.40604 1 16103 16103 2.5775 0 1 1832 2483 1127 1128 2331 2331 0.04409794996990968 AYAKALEII 9 Unmodified _AYAKALEII_ 0 0 0 nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7 nc|ENSG00000135624|Q99832-2|CCT7 nc|ENSG00000135624|Q99832-2|CCT7 MULTI-MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.294768 990.574983 0.10363 5.1429E-05 1.4103 0.00069995 1.514 0.00075138 496.29536107131213 32.588 0.090248 32.588 32.569 32.659 0 9 4 3 0 0 0 0.48846 1 5599 5599 1.8442 1.1539 1 372360 1833 2919 1128 1129 2332 2332 0.0793181510841805 AYALLKYRI 9 Unmodified _AYALLKYRI_ 0 0 0 REV__L1MA3_dup5498|chrX:97008062-97010567:-|1.492384733799604|0.0330917208209818|5.5|149.0|106|1|anti-sense REV__L1MA3_dup5498|chrX:97008062-97010567:-|1.492384733799604|0.0330917208209818|5.5|149.0|106|1|anti-sense MSMS UPN48_class_I_Rep_3 7 555.8349609375 2 555.837134 1109.65972 NaN NaN NaN NaN NaN NaN NaN 14.223 1 17.757 17.257 18.257 3.5341 0 0 0 0.40038 1 387 387 0.6015 0 1 + 1834 25054 1129 1130 2333 2333 0.10927185645027748 AYARLGDAYL 10 Unmodified _AYARLGDAYL_ 0 0 0 REV__ENSG00000110811|ENST00000290510|P3H3 REV__ENSG00000110811|ENST00000290510|P3H3 MULTI-MSMS UPN48_class_I_Rep_1 5 556.7921142578125 2 556.790381 1111.56621 0.48031 0.00026743 0.78427 0.00043667 1.2646 0.00070411 556.7909217375181 50.571 0.18421 54.095 53.929 54.113 3.5246 16 12 2 0 0 0 0.52562 1 10329 10329 8.7454 0.15213 1 78773 + 1835 18438 1130 1131 2334 2334 0.014888414719507637 AYDEKPNYQ 9 Unmodified _AYDEKPNYQ_ 0 0 0 nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2 nc|ENSG00000028116|Q86Y07-5|VRK2 nc|ENSG00000028116|Q86Y07-5|VRK2 MSMS UPN47_class_I_Rep_2 3 564.2543334960938 2 564.253828 1126.4931 NaN NaN NaN NaN NaN NaN NaN 55.15 1 58.46 57.96 58.96 3.3102 0 0 0 0.37891 1 12524 12524 5.7319 1.4026 1 1836 828 1131 1132 2335 2335 -0.06508332041335052 AYDFRFTQ 8 Unmodified _AYDFRFTQ_ 0 0 0 REV__nc|ENSG00000068796|O00139-2|KIF2A REV__nc|ENSG00000068796|O00139-2|KIF2A MULTI-MSMS UPN47_class_I_Rep_1 2 524.7498779296875 2 524.248349 1046.48214 0.20291 0.00010638 0.0024484 1.2836E-06 0.20536 0.00010766 524.2483293630659 51.281 0.65279 54.874 54.639 55.292 3.5932 50 32 2 0 0 0 0.82752 2 11324 11324;11364 16.942 1.0951 1 122800 + 1837 17782 1132 1133 2336;2337 2336 -0.03923689624934923 AYDLAPRFP 9 Unmodified _AYDLAPRFP_ 0 0 0 REV__ENSG00000176399|ENST00000325870|DMRTA1 REV__ENSG00000176399|ENST00000325870|DMRTA1 MSMS UPN47_class_I_Rep_2 3 525.2378540039062 2 525.274367 1048.53418 NaN NaN NaN NaN NaN NaN NaN 37.894 1 41.282 40.782 41.782 3.3879 0 0 0 0.38299 1 7277 7277 4.756 0.42677 1 + 1838 20586 1133 1134 2338 2338 0.011854737888143063 AYELTQYYF 9 Unmodified _AYELTQYYF_ 0 0 0 nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR MSMS UPN48_class_I_Rep_2 6 599.2775268554688 2 599.276772 1196.53899 NaN NaN NaN NaN NaN NaN NaN 75.04 1 78.63 78.13 79.13 3.59 0 0 0 0.3377 1 17683 17683 8.7454 2.3913 1 1839 4062 1134 1135 2339 2339 -0.05141686859087713 AYFDFPELL 9 Unmodified _AYFDFPELL_ 0 0 0 nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENSG00000181381|ENST00000682922|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L MULTI-MSMS UPN48_class_I_Rep_3 7 557.7762451171875 2 557.776408 1113.53826 0.40811 0.00022764 -0.21628 -0.00012064 0.19183 0.000107 557.7761654443439 96.722 0.074257 100.63 100.57 100.65 3.9084 13 9 2 0 0 0 0.30034 1 22926 22926 13.906 6.8043 1 88485 1840 4916 1135 1136 2340 2340 -0.013964815081408233 AYFHCVKLYYF 11 Unmodified _AYFHCVKLYYF_ 0 0 0 REV__L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|195|3|anti-sense REV__L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|195|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 485.23712158203125 3 485.237286 1452.69003 0.15499 7.5209E-05 -0.56232 -0.00027286 -0.40732 -0.00019765 485.23698891754697 36.196 0.62902 36.196 35.717 36.346 0 89 47 2 0 0 0 0.62008 1 6617 6617 4.7159 0.59929 1 327710 + 1841 30401 1136 1137 2341 2341 -0.018208237520866533 AYFKKWGR 8 Unmodified _AYFKKWGR_ 0 0 0 REV__ENSG00000146005|ENST00000274710|PSD2 REV__ENSG00000146005|ENST00000274710|PSD2 MSMS UPN48_class_I_Rep_2 6 528.2921142578125 2 528.292894 1054.57123 NaN NaN NaN NaN NaN NaN NaN 113.94 1 117.6 117.1 118.1 3.663 0 0 0 0.40746 1 27210 27210 0.69038 0.088878 1 + 1842 19527 1137 1138 2342 2342 0.046131901252238094 AYFKQSSVF 9 Unmodified _AYFKQSSVF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MULTI-MSMS UPN48_class_I_Rep_1 5 538.7742919921875 2 538.7742 1075.53385 0.35157 0.00018942 -0.1052 -5.6679E-05 0.24637 0.00013274 538.7742780807245 48.169 0.32606 51.691 51.533 51.859 3.5219 26 20 2 0 0 0 0.31407 1 9603 9603 13.042 1.5478 1 84363 1843 4389 1138 1139 2343 2343 -0.0008994593106308457 AYFKQSSVF 9 Unmodified _AYFKQSSVF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 538.7742 1075.53385 0.36466 0.00019647 0.73255 0.00039468 1.0972 0.00059115 539.2764418072978 47.885 0.31264 51.621 51.516 51.828 3.7361 -0.035042 0.00060649 NaN 13.042 24 21 2 NaN NaN NaN NaN 0 NaN NaN 0 97424 1844 4389 1138 1139 -0.0008994593106308457 AYFTETEKF 9 Unmodified _AYFTETEKF_ 0 0 0 nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 MULTI-MSMS UPN48_class_I_Rep_1 5 568.2694091796875 2 568.268947 1134.52334 0.39742 0.00022584 -0.11185 -6.356E-05 0.28557 0.00016228 568.2688692449022 48.369 0.5125 51.893 51.624 52.136 3.5239 54 32 2 0 0 0 0.028995 2 9679 9635;9679 57.722 26.454 1 224010 1845 1348 1139 1140 2344;2345 2345 -0.038539733761581374 AYFTETEKF 9 Unmodified _AYFTETEKF_ 0 0 0 nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 MULTI-MSMS UPN48_class_I_Rep_2 6 568.2680053710938 2 568.268947 1134.52334 0.3868 0.00021981 -0.071278 -4.0505E-05 0.31552 0.0001793 568.2688415494812 48.065 0.59412 51.801 51.573 52.167 3.7361 67 40 2 0 0 0 0.019142 3 9594 9550;9594;9598 63.961 31.655 1 184430 1846 1348 1139 1140 2346;2347;2348 2347 -0.038539733761581374 AYFTETEKF 9 Unmodified _AYFTETEKF_ 0 0 0 nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 MULTI-MSMS UPN48_class_I_Rep_3 7 568.2691650390625 2 568.268947 1134.52334 0.36721 0.00020868 0.033061 1.8788E-05 0.40027 0.00022746 568.2688797107476 48.241 0.59587 51.875 51.647 52.243 3.6339 71 41 2 0 0 0 0.006828 2 9553 9553;9593 72.968 36.462 1 191990 1847 1348 1139 1140 2349;2350 2349 -0.038539733761581374 AYGDIILTF 9 Unmodified _AYGDIILTF_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MSMS UPN48_class_I_Rep_2 6 506.7707824707031 2 506.771126 1011.5277 NaN NaN NaN NaN NaN NaN NaN 85.443 1 89.149 88.649 89.649 3.7058 0 0 0 0.096434 1 20318 20318 25.399 1.3787 1 1848 1571 1140 1141 2351 2351 0.022395358374296848 AYGHFSYEF 9 Unmodified _AYGHFSYEF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 560.74072265625 2 560.740357 1119.46616 0.49767 0.00027906 -0.14438 -8.0959E-05 0.35329 0.00019811 560.7401782206316 54.676 0.75941 58.187 57.902 58.661 3.5107 120 51 3 0 0 0 0.045397 4 11589 11552;11589;11628;11667 50.855 20.218 1 290950 1849 1113 1141 1142 2352;2353;2354;2355 2353 -0.08879395861845296 AYGHFSYEF 9 Unmodified _AYGHFSYEF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 560.7405395507812 2 560.740357 1119.46616 0.60241 0.00033779 -0.24526 -0.00013752 0.35715 0.00020027 560.7400808505859 54.623 0.80239 58.205 57.916 58.718 3.5817 120 50 3 0 0 0 0.20276 2 11603 11558;11603 20.454 6.5476 1 302520 1850 1113 1141 1142 2356;2357 2357 -0.08879395861845296 AYGHFSYEF 9 Unmodified _AYGHFSYEF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 560.7404174804688 2 560.740357 1119.46616 0.28425 0.00015939 -0.0097276 -5.4547E-06 0.27452 0.00015394 560.740217512677 54.624 0.74107 58.193 57.862 58.603 3.5694 107 49 3 0 0 0 0.09884 4 11491 11451;11491;11533;11584 34.102 10.082 1 289740 1851 1113 1141 1142 2358;2359;2360;2361 2359 -0.08879395861845296 AYGHLLLQL 9 Unmodified _AYGHLLLQL_ 0 0 0 L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|284|2|anti-sense L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|284|2|anti-sense L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|284|2|anti-sense MSMS UPN48_class_I_Rep_2 6 514.3005981445312 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.66 1 75.211 74.711 75.711 3.5505 0 0 0 0.26661 1 16735 16735 12.532 0.89125 1 1852 14014 1142 1143 2362 2362 0.073986372025729 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36 ENST00000505303.5_1_5:110428043-110447004:+|nuORF ENST00000505303.5_1_5:110428043-110447004:+|nuORF MSMS UPN48_class_I_Rep_1 5 488.232421875 2 488.232168 974.449782 NaN NaN NaN NaN NaN NaN NaN 73.348 1 76.83 76.33 77.33 3.4812 0 0 0 0.22485 1 17277 17277 14.838 2.5976 1 1853 2880 1143 1144 2363 2363 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36 ENST00000505303.5_1_5:110428043-110447004:+|nuORF ENST00000505303.5_1_5:110428043-110447004:+|nuORF MSMS UPN48_class_I_Rep_1 5 488.23211669921875 2 488.232168 974.449782 NaN NaN NaN NaN NaN NaN NaN 73.474 1 76.955 76.455 77.455 3.4812 0 0 0 0.04168 1 17317 17317 39.95 10.868 1 1854 2880 1143 1144 2364 2364 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36 ENST00000505303.5_1_5:110428043-110447004:+|nuORF ENST00000505303.5_1_5:110428043-110447004:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 488.2319030761719 2 488.232168 974.449782 0.28812 0.00014067 -0.020424 -9.9715E-06 0.2677 0.0001307 488.23208771628845 73.395 0.47085 76.932 76.71 77.181 3.5373 84 52 2 0 0 0 0.090251 1 17184 17184 36.127 4.8587 1 153800 1855 2880 1143 1144 2365 2365 -0.03846477027957462 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;ENSG00000137944.18,KYAT3,chr1,-,I12.1,88949278,88953062|25|8.48|3|intron;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3 nc|ENSG00000137944|Q6YP21-2|KYAT3 nc|ENSG00000137944|Q6YP21-2|KYAT3 MSMS UPN48_class_I_Rep_1 5 493.2531433105469 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 71.933 1 75.406 74.906 75.906 3.4732 0 0 0 0.092202 1 16852 16852 26.268 2.2476 1 1856 3054 1144 1145 2366 2366 -0.0012192133942789951 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;ENSG00000137944.18,KYAT3,chr1,-,I12.1,88949278,88953062|25|8.48|3|intron;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3 nc|ENSG00000137944|Q6YP21-2|KYAT3 nc|ENSG00000137944|Q6YP21-2|KYAT3 MSMS UPN48_class_I_Rep_1 5 493.2533264160156 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 72.052 1 75.525 75.025 76.025 3.4732 0 0 0 0.058622 1 16886 16886 34.402 5.3201 1 1857 3054 1144 1145 2367 2367 -0.0012192133942789951 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;ENSG00000137944.18,KYAT3,chr1,-,I12.1,88949278,88953062|25|8.48|3|intron;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3 nc|ENSG00000137944|Q6YP21-2|KYAT3 nc|ENSG00000137944|Q6YP21-2|KYAT3 MULTI-MSMS UPN48_class_I_Rep_3 7 493.25341796875 2 493.2531 984.491647 0.30138 0.00014866 -0.010712 -5.2837E-06 0.29067 0.00014337 493.25302664622495 71.723 0.5875 75.25 74.971 75.558 3.5266 78 56 2 0 0 0 0.037922 1 16724 16724 53.833 15.859 1 191080 1858 3054 1144 1145 2368 2368 -0.0012192133942789951 AYHFFLIL 8 Unmodified _AYHFFLIL_ 0 0 0 REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|35|2|sense REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|35|2|sense MSMS UPN47_class_I_Rep_2 3 512.2875366210938 2 512.286746 1022.55894 NaN NaN NaN NaN NaN NaN NaN 30.092 1 33.574 33.074 34.074 3.4821 0 0 0 0.40738 1 4911 4911 0.79363 0 1 + 1859 23950 1145 1146 2369 2369 0.048561536622059975 AYHLLEDY 8 Unmodified _AYHLLEDY_ 0 0 0 nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15 nc|ENSG00000164134|Q9BXJ9-4|NAA15 nc|ENSG00000164134|Q9BXJ9-4|NAA15 MSMS UPN47_class_I_Rep_2 3 512.2437133789062 2 512.242732 1022.47091 NaN NaN NaN NaN NaN NaN NaN 32.158 1 35.62 35.12 36.12 3.4624 0 0 0 0.40581 1 5536 5536 2.8892 0.31174 1 1860 4086 1146 1147 2370 2370 -0.03942511719094455 AYHRLPKVL 9 Unmodified _AYHRLPKVL_ 0 0 0 REV__ENSG00000119522.16,DENND1A,chr9,-,I31.1,123382626,123383654|29|5.22|1|intron REV__ENSG00000119522.16,DENND1A,chr9,-,I31.1,123382626,123383654|29|5.22|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 548.835693359375 2 548.834926 1095.6553 0.11111 6.0982E-05 0.68923 0.00037827 0.80034 0.00043925 548.8351954162264 28.972 0.10253 28.972 28.908 29.01 0 14 6 3 0 0 0 0.48643 1 4525 4525 2.0598 1.3694 1 137330 + 1861 18676 1147 1148 2371 2371 0.11129721222141598 AYIDENLFH 9 Unmodified _AYIDENLFH_ 0 0 0 REV__L1PA7_dup288|chr1:89663587-89665446:-|2.744603953100647|0.112490957303213|4.61|151.0|52|3|sense REV__L1PA7_dup288|chr1:89663587-89665446:-|2.744603953100647|0.112490957303213|4.61|151.0|52|3|sense MSMS UPN48_class_I_Rep_3 7 561.2673950195312 2 561.266739 1120.51892 NaN NaN NaN NaN NaN NaN NaN 40.121 1 43.772 43.272 44.272 3.6509 0 0 0 0.34056 1 7097 7097 8.5933 0 1 + 1862 30061 1148 1149 2372 2372 -0.036514377990670255 AYIFGYKK 8 Unmodified _AYIFGYKK_ 0 0 0 REV__L1ME1_dup24811|chr14:61325005-61326605:+|1.260551361563973|0.0700260264245186|4.17|151.0|41|2|sense REV__L1ME1_dup24811|chr14:61325005-61326605:+|1.260551361563973|0.0700260264245186|4.17|151.0|41|2|sense MSMS UPN47_class_I_Rep_2 3 495.27520751953125 2 495.276378 988.538203 NaN NaN NaN NaN NaN NaN NaN 24.88 1 28.363 27.863 28.863 3.483 0 0 0 0.40738 1 3370 3370 0.79363 0 1 + 1863 27699 1149 1150 2373 2373 0.0434756328252206 AYIINQKAR 9 Unmodified _AYIINQKAR_ 0 0 0 REV__ENSG00000248713|ENST00000511828|C4orf54 REV__ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS UPN48_class_I_Rep_3 7 539.8178100585938 2 538.81419 1075.61383 0.44478 0.00023965 -0.10636 -5.731E-05 0.33841 0.00018234 538.8140628949074 55.517 0.84217 59.073 58.575 59.418 3.5554 99 51 3 0 0 0 0.3898 1 11784 11784 8.5933 0 1 419310 + 1864 21347 1150 1151 2374 2374 0.07904540462777732 AYILDTLVF 9 Unmodified _AYILDTLVF_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS UPN48_class_I_Rep_1 5 527.7944946289062 2 527.794601 1053.57465 NaN NaN NaN NaN NaN NaN NaN 93.215 1 96.838 96.338 97.338 3.624 0 0 0 0.036183 1 22400 22400 42.095 7.9921 1 1865 1239 1151 1152 2375 2375 0.05000395388583456 AYILDTLVF 9 Unmodified _AYILDTLVF_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS UPN48_class_I_Rep_1 5 527.7943725585938 2 527.794601 1053.57465 NaN NaN NaN NaN NaN NaN NaN 93.353 1 96.977 96.477 97.477 3.624 0 0 0 0.066339 1 22436 22436 32.305 5.4218 1 1866 1239 1151 1152 2376 2376 0.05000395388583456 AYIQTKNKN 9 Unmodified _AYIQTKNKN_ 0 0 0 REV__L1M2b_dup44|chr3:138645283-138646488:-|6.510637905950183|0.1315662214383025|5.63|151.0|20|2|sense REV__L1M2b_dup44|chr3:138645283-138646488:-|6.510637905950183|0.1315662214383025|5.63|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 540.2959594726562 2 540.29583 1078.57711 NaN NaN NaN NaN NaN NaN NaN 44.018 1 47.531 47.031 48.031 3.5132 0 0 0 0.38299 1 8329 8329 4.756 0.42677 1 + 1867 24273 1152 1153 2377 2377 0.04096243846242942 AYKYIQELW 9 Unmodified _AYKYIQELW_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15 ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN48_class_I_Rep_1 5 607.3142700195312 2 607.316232 1212.61791 0.52412 0.00031831 -0.38677 -0.00023489 0.13735 8.3418E-05 607.3159010791652 65.075 0.13147 68.529 68.433 68.564 3.4541 13 9 2 0 0 0 0.38311 1 14783 14783 8.7454 2.985 1 90250 1868 4689 1153 1154 2378 2378 0.020105851658399843 AYKYIQELW 9 Unmodified _AYKYIQELW_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15 ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MATCH UPN48_class_I_Rep_3 7 2 607.316232 1212.61791 0.58234 0.00035367 1.092 0.00066318 1.6743 0.0010168 607.3167095130426 64.63 0.052643 68.139 68.116 68.168 3.5083 -0.19536 0.001171 NaN 8.7454 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 32139 1869 4689 1153 1154 0.020105851658399843 AYLAGPLGLL 10 Unmodified _AYLAGPLGLL_ 0 0 0 REV__ENSG00000108839|ENST00000251535|ALOX12 REV__ENSG00000108839|ENST00000251535|ALOX12 MULTI-MSMS UPN48_class_I_Rep_1 5 494.29718017578125 2 494.29731 986.580068 0.19898 9.8354E-05 0.24166 0.00011945 0.44063 0.0002178 494.29741826412857 77.636 0.13874 81.158 81.06 81.198 3.5221 13 9 2 0 0 0 0.34369 1 18489 18489 24.674 2.9272 1 76269 + 1870 18396 1154 1155 2379 2379 0.08624118971033568 AYLAGPLGLL 10 Unmodified _AYLAGPLGLL_ 0 0 0 REV__ENSG00000108839|ENST00000251535|ALOX12 REV__ENSG00000108839|ENST00000251535|ALOX12 MULTI-MSMS UPN48_class_I_Rep_1 5 494.2970886230469 2 494.29731 986.580068 0.19893 9.8331E-05 0.2102 0.0001039 0.40913 0.00020223 494.2972730615472 77.821 0.15413 81.343 81.198 81.353 3.5221 28 15 2 0 0 0 0.34369 1 18509 18509 24.674 2.9272 1 137820 + 1871 18396 1154 1155 2380 2380 0.08624118971033568 AYLAGPLGLL 10 Unmodified _AYLAGPLGLL_ 0 0 0 REV__ENSG00000108839|ENST00000251535|ALOX12 REV__ENSG00000108839|ENST00000251535|ALOX12 MULTI-SECPEP UPN48_class_I_Rep_1 5 493.78143310546875 2 494.29731 986.580068 0.19898 9.8354E-05 0.24166 0.00011945 0.44063 0.0002178 494.29741826412857 77.636 0.13874 81.158 81.06 81.198 3.5221 13 9 2 0 0 0 0.84575 1 18482 18482 7.9102 0.62092 1 76269 + 1872 18396 1154 1155 2381 2381 0.08624118971033568 AYLAGPLGLL 10 Unmodified _AYLAGPLGLL_ 0 0 0 REV__ENSG00000108839|ENST00000251535|ALOX12 REV__ENSG00000108839|ENST00000251535|ALOX12 MULTI-SECPEP UPN48_class_I_Rep_1 5 494.77117919921875 2 494.29731 986.580068 0.19811 9.7927E-05 0.47035 0.00023249 0.66846 0.00033042 494.2974873554332 78.077 0.039131 81.599 81.582 81.621 3.5221 7 4 2 0 0 0 0.84575 1 18613 18613 18.135 1.1927 1 40932 + 1873 18396 1154 1155 2382 2382 0.08624118971033568 AYLAGPLGLL 10 Unmodified _AYLAGPLGLL_ 0 0 0 REV__ENSG00000108839|ENST00000251535|ALOX12 REV__ENSG00000108839|ENST00000251535|ALOX12 MULTI-MSMS UPN48_class_I_Rep_3 7 494.2976989746094 2 494.29731 986.580068 0.28957 0.00014314 -0.16653 -8.2315E-05 0.12304 6.082E-05 494.2971803366688 77.694 0.65324 81.295 81.003 81.656 3.6016 107 66 2 0 0 0 0.34369 1 18422 18422 24.674 2.9272 1 200920 + 1874 18396 1154 1155 2383 2383 0.08624118971033568 AYLDLTTFI 9 Unmodified _AYLDLTTFI_ 0 0 0 REV__nc|ENSG00000163873|Q13003-2|GRIK3 REV__nc|ENSG00000163873|Q13003-2|GRIK3 MULTI-SECPEP UPN48_class_I_Rep_2 6 528.7843017578125 2 528.784233 1055.55391 0.41231 0.00021802 -0.20672 -0.00010931 0.20559 0.00010871 528.7840337958106 88.812 0.072235 92.549 92.506 92.578 3.7379 15 9 2 0 0 0 0.12462 1 21142 21142 1.8442 0 1 86859 + 1875 20014 1155 1156 2384 2384 0.028358050088854725 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-3|NUP107 MULTI-MSMS UPN48_class_I_Rep_1 5 540.7537841796875 2 540.753464 1079.49238 0.38913 0.00021042 -0.085065 -4.5999E-05 0.30407 0.00016443 540.7533761824295 44.258 0.52061 47.771 47.475 47.996 3.5132 66 38 2 0 0 0 0.060667 3 8387 8340;8387;8433 44.407 19.733 1 126030 1876 1974 1156 1157 2385;2386;2387 2386 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-3|NUP107 MULTI-MSMS UPN48_class_I_Rep_2 6 540.7536010742188 2 540.753464 1079.49238 0.40063 0.00021664 -0.205 -0.00011085 0.19563 0.00010579 540.7532602548895 43.851 0.56541 47.612 47.362 47.928 3.7617 72 42 2 0 0 0 0.060667 2 8278 8278;8321 44.407 19.733 1 126060 1877 1974 1156 1157 2388;2389 2388 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-3|NUP107 MULTI-MSMS UPN48_class_I_Rep_3 7 540.7534790039062 2 540.753464 1079.49238 0.45801 0.00024767 -0.42865 -0.00023179 0.029367 1.5881E-05 540.7531079721464 44.07 0.72323 47.708 47.393 48.117 3.6385 72 47 2 0 0 0 0.09884 4 8245 8245;8284;8327;8343 34.102 17.16 1 137120 1878 1974 1156 1157 2390;2391;2392;2393 2390 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-3|NUP107 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 540.753464 1079.49238 0.19185 0.00010374 -0.70703 -0.00038233 -0.51518 -0.00027859 540.7531153379073 44.798 0.57308 48.042 47.763 48.336 3.2441 0.25871 -0.000468 NaN 44.407 43 36 2 NaN NaN NaN NaN 0 NaN NaN 0 78445 1879 1974 1156 1157 -0.0441912669039084 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.2714233398438 2 539.271824 1076.5291 0.42939 0.00023156 -0.51702 -0.00027881 -0.087627 -4.7255E-05 539.2717619319121 55.458 0.60011 58.967 58.706 59.306 3.5082 59 39 2 0 0 0 0.057664 1 11829 11829 45.7 28.587 1 179010 1880 873 1157 1158 2394 2394 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_2 6 539.2721557617188 2 539.271824 1076.5291 0.59283 0.0003197 -0.75158 -0.00040531 -0.15875 -8.5608E-05 539.271423061962 55.393 0.64318 58.949 58.692 59.335 3.5559 55 37 2 0 0 0 0.1249 1 11863 11863 29.082 14.243 1 147320 1881 873 1157 1158 2395 2395 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_3 7 539.2718505859375 2 539.271824 1076.5291 0.43941 0.00023696 -0.46324 -0.00024981 -0.023828 -1.285E-05 539.2717055252394 55.396 0.47356 58.951 58.671 59.144 3.5554 47 25 2 0 0 0 0.062142 1 11727 11727 43.772 26.659 1 185300 1882 873 1157 1158 2396 2396 -0.006108300738333128 AYLEALSHL 9 Unmodified _AYLEALSHL_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MSMS UPN48_class_I_Rep_1 5 508.7735900878906 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 62.057 1 65.525 65.025 66.025 3.4678 0 0 0 0.046744 1 13859 13859 37.974 13.953 1 1883 4534 1158 1159 2397 2397 0.02670054068948957 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 MSMS UPN48_class_I_Rep_1 5 567.2796630859375 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 53.594 1 57.11 56.61 57.61 3.5161 0 0 0 0.035625 1 11264 11264 42.312 19.654 1 1884 3127 1159 1160 2398 2398 -0.01689382996482891 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 MSMS UPN48_class_I_Rep_2 6 567.2792358398438 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 53.263 1 56.873 56.373 57.373 3.6098 0 0 0 0.062145 1 11146 11146 33.445 14.083 1 1885 3127 1159 1160 2399 2399 -0.01689382996482891 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 MSMS UPN48_class_I_Rep_2 6 567.2786865234375 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 53.552 1 57.162 56.662 57.662 3.6098 0 0 0 0.10979 1 11235 11235 22.658 9.6156 1 1886 3127 1159 1160 2400 2400 -0.01689382996482891 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 ENSG00000139163|ENST00000266517|ETNK1 MSMS UPN48_class_I_Rep_3 7 567.280029296875 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 53.404 1 56.987 56.487 57.487 3.5836 0 0 0 0.014348 1 11128 11128 55.235 31.445 1 1887 3127 1159 1160 2401 2401 -0.01689382996482891 AYLESFYKF 9 Unmodified _AYLESFYKF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_1 5 584.28955078125 2 584.289682 1166.56481 0.47992 0.00028041 0.047818 2.7939E-05 0.52774 0.00030835 584.289560869242 67.136 0.85441 70.587 70.182 71.036 3.4516 112 56 3 0 0 0 0.0053074 6 15441 15316;15358;15402;15441;15484;15517 79.596 43.469 1 417590 1888 3845 1160 1161 2402;2403;2404;2405;2406;2407 2405 -0.011807926168103222 AYLESFYKF 9 Unmodified _AYLESFYKF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_2 6 584.2888793945312 2 584.289682 1166.56481 0.49829 0.00029114 -0.054822 -3.2032E-05 0.44346 0.00025911 584.2895733521945 66.967 0.81487 70.463 70.067 70.881 3.4964 122 52 3 0 0 0 0.028995 5 15409 15281;15322;15369;15409;15457 57.722 38.465 1 429840 1889 3845 1160 1161 2408;2409;2410;2411;2412 2411 -0.011807926168103222 AYLESFYKF 9 Unmodified _AYLESFYKF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_3 7 584.2897338867188 2 584.289682 1166.56481 0.54533 0.00031863 -0.10226 -5.9749E-05 0.44307 0.00025888 584.2895106517153 66.842 0.74815 70.35 70.02 70.768 3.5077 110 49 3 0 0 0 0.006828 7 15186 15128;15142;15186;15230;15274;15310;15318 72.968 42.331 1 403710 1890 3845 1160 1161 2413;2414;2415;2416;2417;2418;2419 2415 -0.011807926168103222 AYLFILLAVP 10 Unmodified _AYLFILLAVP_ 0 0 0 L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|77|1|anti-sense L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|77|1|anti-sense L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_2 6 560.264892578125 2 560.344261 1118.67397 NaN NaN NaN NaN NaN NaN NaN 80.529 1 84.174 83.674 84.674 3.6446 0 0 0 0.53105 1 19107 19107 7.9102 0.62092 1 1891 11272 1161 1162 2420 2420 0.1193783807334512 AYLLNNLVG 9 Unmodified _AYLLNNLVG_ 0 0 0 REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron MULTI-MSMS UPN48_class_I_Rep_2 6 488.77679443359375 2 488.776742 975.538931 0.25035 0.00012237 -0.21931 -0.00010719 0.031047 1.5175E-05 488.77656658320797 71.453 0.51332 75.003 74.762 75.275 3.5505 85 50 2 0 0 0 0.26948 1 16647 16647 15.847 2.8047 1 271640 + 1892 18406 1162 1163 2421 2421 0.05018357931567152 AYLYQNIT 8 Unmodified _AYLYQNIT_ 0 0 0 L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 493.2532043457031 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 71.809 1 75.275 74.775 75.775 3.466 0 0 0 0.39819 1 16815 16815 8.5933 0 1 1893 9751 1163 1164 2422 2422 -0.0012192133945063688 AYLYQNIT 8 Unmodified _AYLYQNIT_ 0 0 0 L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 493.25311279296875 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 71.881 1 75.432 74.932 75.932 3.5505 0 0 0 0.39819 1 16799 16799 8.5933 0 1 1894 9751 1163 1164 2423 2423 -0.0012192133945063688 AYLYQNIT 8 Unmodified _AYLYQNIT_ 0 0 0 L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense L1MA4_dup9661|chr20:32403878-32404296:-|1.0098416474044982|0.0069370426738199|7.19|150.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 493.2528991699219 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 72.033 1 75.56 75.06 76.06 3.5266 0 0 0 0.4044 1 16765 16765 4.756 0 1 1895 9751 1163 1164 2424 2424 -0.0012192133945063688 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(51)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_2 6 571.7701416015625 2 571.770603 1141.52665 0.54976 0.00031434 -0.88754 -0.00050747 -0.33778 -0.00019313 571.7701746298893 60.716 0.67702 64.195 63.929 64.606 3.4785 77 62 2 0 0 0 0.045397 1 13427 13427 50.855 30.401 1 250530 1896 3464 1164 1165 2425 2425 114 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(42)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_3 7 571.7693481445312 2 571.770603 1141.52665 0.46181 0.00026405 -0.58586 -0.00033498 -0.12405 -7.0929E-05 571.7702708534763 60.598 0.7216 64.111 63.798 64.519 3.5128 87 68 2 0 0 0 0.066041 1 13319 13319 42.095 20.348 1 223410 1897 3464 1164 1165 2426 2426 114 -0.038450018031426225 AYNKEFEA 8 Unmodified _AYNKEFEA_ 0 0 0 REV__ENSG00000162992|ENST00000295108|NEUROD1 REV__ENSG00000162992|ENST00000295108|NEUROD1 MSMS UPN46_class_I_Rep_3 1 486.27069091796875 2 486.227082 970.439611 NaN NaN NaN NaN NaN NaN NaN 56.801 1 56.801 56.301 57.301 0 0 0 0 0.388 1 12409 12409 12.532 1.7076 1 + 1898 19955 1165 1166 2427 2427 -0.04679084753183815 AYPARKPF 8 Unmodified _AYPARKPF_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MSMS UPN47_class_I_Rep_3 4 475.3896179199219 2 475.266345 948.518136 NaN NaN NaN NaN NaN NaN NaN 98.329 1 101.76 101.26 102.26 3.4328 0 0 0 0.40738 1 24355 24355 0.79363 0 1 + 1899 21387 1166 1167 2428 2428 0.04181812342562807 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15;nc|ENSG00000173193|Q460N5-5|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MSMS UPN48_class_I_Rep_1 5 558.7842407226562 2 558.784233 1115.55391 NaN NaN NaN NaN NaN NaN NaN 83.843 1 87.44 86.94 87.94 3.5973 0 0 0 0.036836 1 20060 20060 41.84 5.7126 1 1900 4615 1167 1168 2429 2429 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15;nc|ENSG00000173193|Q460N5-5|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MSMS UPN48_class_I_Rep_1 5 558.7847290039062 2 558.784233 1115.55391 NaN NaN NaN NaN NaN NaN NaN 84.155 1 87.752 87.252 88.252 3.5973 0 0 0 0.17222 1 20146 20146 18.146 2.2992 1 1901 4615 1167 1168 2430 2430 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15;nc|ENSG00000173193|Q460N5-5|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS UPN48_class_I_Rep_2 6 558.7843627929688 2 558.784233 1115.55391 0.49351 0.00027577 -0.37163 -0.00020766 0.12188 6.8105E-05 558.7839311625468 83.723 0.72553 87.404 87.146 87.872 3.6814 162 77 3 0 0 0 0.032038 3 19888 19888;19924;19963 56.177 25.541 1 300720 1902 4615 1167 1168 2431;2432;2433 2431 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15;nc|ENSG00000173193|Q460N5-5|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS UPN48_class_I_Rep_3 7 558.7841796875 2 558.784233 1115.55391 0.44053 0.00024616 -0.24623 -0.00013759 0.1943 0.00010857 558.7839663752962 83.709 0.66811 87.437 87.205 87.873 3.7281 169 81 3 0 0 0 0.01718 6 19873 19799;19815;19827;19842;19873;19908 65.235 34.598 1 361520 1903 4615 1167 1168 2434;2435;2436;2437;2438;2439 2438 0.0007580500889616815 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(89)TF 0 0 1 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_1 5 555.2578125 2 555.257859 1108.50117 0.48737 0.00027062 -0.092885 -5.1575E-05 0.39448 0.00021904 555.2576378092921 44.812 1.0806 48.325 47.984 49.065 3.5132 177 77 3 0 0 0 0.0064938 4 8549 8509;8549;8588;8627 136.33 85.478 1 1081000 1904 1030 1168 1169 2440;2441;2442;2443 2441 25 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(61)TF 0 0 1 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_1 5 555.2578125 2 555.257859 1108.50117 0.49172 0.00027303 -0.15198 -8.439E-05 0.33974 0.00018864 555.2576814480368 50.94 1.1831 54.465 53.841 55.024 3.5246 162 78 3 0 0 0 0.023254 5 10513 10381;10426;10465;10513;10557 61.357 30.721 1 213090 1905 1030 1168 1169 2444;2445;2446;2447;2448 2447 25 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(150)TF 0 0 1 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_2 6 555.2579956054688 2 555.257859 1108.50117 0.4155 0.00023071 -0.099751 -5.5388E-05 0.31575 0.00017532 555.2577004812963 44.554 1.0599 48.315 47.892 48.952 3.7617 200 77 4 0 0 0 0.0013614 5 8494 8417;8456;8494;8531;8573 152.41 101.56 1 1234000 1906 1030 1168 1169 2449;2450;2451;2452;2453 2451 25 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(44)TF 0 0 1 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_2 6 555.2579345703125 2 555.257859 1108.50117 0.48143 0.00026732 -0.18333 -0.0001018 0.2981 0.00016552 555.2577147286894 50.854 1.4992 54.522 53.729 55.229 3.6679 190 98 3 0 0 0 0.061943 1 10413 10413 43.858 16.975 1 234940 1907 1030 1168 1169 2454 2454 25 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(92)TF 0 0 1 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.2579956054688 2 555.257859 1108.50117 0.31771 0.00017641 -0.064375 -3.5745E-05 0.25333 0.00014066 555.2577649626625 44.751 0.99755 48.388 47.982 48.979 3.6372 187 69 4 0 0 0 0.0052487 5 8563 8437;8480;8517;8556;8563 136.33 84.065 1 1200400 1908 1030 1168 1169 2455;2456;2457;2458;2459 2459 25 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(61)TF 0 0 1 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.7594604492188 2 555.257859 1108.50117 0.28193 0.00015654 0.048749 2.7068E-05 0.33068 0.00018361 555.2578003301961 50.969 1.4365 54.579 53.759 55.195 3.6105 166 95 2 0 0 0 0.023254 3 10465 10380;10424;10465 61.357 21.4 1 272550 1909 1030 1168 1169 2460;2461;2462 2462 25 -0.04874476325562682 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_1 5 547.2603759765625 2 547.260402 1092.50625 0.51361 0.00028108 -0.02326 -1.2729E-05 0.49035 0.00026835 547.2603187807057 55.724 0.74624 59.232 58.808 59.554 3.5082 85 50 2 0 0 0 0.061943 3 11916 11871;11916;11957 43.858 15.371 1 191250 1910 1030 1168 1170 2463;2464;2465 2464 -0.03630172462931114 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_2 6 547.2603759765625 2 547.260402 1092.50625 0.60952 0.00033357 -0.10416 -5.7003E-05 0.50536 0.00027657 547.2602851441014 55.619 0.85777 59.175 58.742 59.6 3.5559 88 55 2 0 0 0 0.023254 3 11883 11780;11839;11883 61.357 25.313 1 167360 1911 1030 1168 1170 2466;2467;2468 2468 -0.03630172462931114 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_3 7 547.2606811523438 2 547.260402 1092.50625 0.33841 0.0001852 0.098026 5.3646E-05 0.43644 0.00023885 547.2603102694642 55.489 0.63517 59.045 58.782 59.418 3.5554 67 39 2 0 0 0 0.061943 4 11779 11740;11779;11822;11843 43.858 12.575 1 172340 1912 1030 1168 1170 2469;2470;2471;2472 2470 -0.03630172462931114 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS UPN48_class_I_Rep_3 7 547.2598876953125 2 547.260402 1092.50625 NaN NaN NaN NaN NaN NaN NaN 55.294 1 58.849 58.349 59.349 3.5554 0 0 0 0.10315 1 11707 11707 24.021 3.5669 1 1913 1030 1168 1170 2473 2473 -0.03630172462931114 AYPHRIIL 8 Unmodified _AYPHRIIL_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS UPN48_class_I_Rep_3 7 491.7963562011719 2 491.795269 981.575986 0.20562 0.00010112 3.6365 0.0017884 3.8421 0.0018895 491.7971447727939 59.226 0.57115 62.749 62.398 62.969 3.5231 63 37 2 0 0 0 0.82752 1 12851 12851 14.582 2.9414 1 222720 + 1914 17914 1169 1171 2474 2474 0.08446074267999393 AYPYNFSNL 9 Unmodified _AYPYNFSNL_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MSMS UPN48_class_I_Rep_1 5 544.7554321289062 2 544.756007 1087.49746 NaN NaN NaN NaN NaN NaN NaN 67.151 1 70.603 70.103 71.103 3.4516 0 0 0 0.34878 1 15410 15410 8.1555 1.0538 1 1915 4676 1170 1172 2475 2475 -0.042788228277458984 AYPYNFSNL 9 Unmodified _AYPYNFSNL_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MSMS UPN48_class_I_Rep_3 7 544.7562255859375 2 544.756007 1087.49746 NaN NaN NaN NaN NaN NaN NaN 66.789 1 70.297 69.797 70.797 3.5077 0 0 0 0.21832 1 15197 15197 15.248 4.449 1 1916 4676 1170 1172 2476 2476 -0.042788228277458984 AYQDRLAYL 9 Unmodified _AYQDRLAYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MSMS UPN48_class_I_Rep_1 5 556.790771484375 2 556.790381 1111.56621 NaN NaN NaN NaN NaN NaN NaN 50.644 1 54.169 53.669 54.669 3.5246 0 0 0 0.27207 1 10364 10364 12.241 0.74595 1 1917 3184 1171 1173 2477 2477 0.014888414719507637 AYQIIYFK 8 Unmodified _AYQIIYFK_ 0 0 0 L1MA10_dup2043|chr7:92345898-92346010:-|1.0169917282977778|0.0825071770459816|3.62|151.0|3|2|sense L1MA10_dup2043|chr7:92345898-92346010:-|1.0169917282977778|0.0825071770459816|3.62|151.0|3|2|sense L1MA10_dup2043|chr7:92345898-92346010:-|1.0169917282977778|0.0825071770459816|3.62|151.0|3|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 523.2893676757812 2 523.289485 1044.56442 0.33014 0.00017276 -0.28208 -0.00014761 0.048066 2.5152E-05 523.2892360585666 66.811 1.5834 69.996 69.622 71.206 3.1853 278 123 4 0 0 0 0.82752 1 16212 16212 14.582 1.0738 1 935770 1918 9308 1172 1174 2478 2478 0.043918324539845344 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN48_class_I_Rep_1 5 548.2952270507812 2 548.295299 1094.57605 0.4744 0.00026011 0.80962 0.00044391 1.284 0.00070402 548.2953081366303 42.294 0.1637 45.802 45.751 45.914 3.5079 22 15 3 0 0 0 0.14216 2 7809 7809;7812 26.268 9.3258 1 132800 1919 3252 1173 1175 2479;2480 2479 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MSMS UPN48_class_I_Rep_1 5 548.29443359375 2 548.295299 1094.57605 NaN NaN NaN NaN NaN NaN NaN 42.173 1 45.681 45.181 46.181 3.5079 0 0 0 0.34878 1 7769 7769 8.1555 0.8663 1 1920 3252 1173 1175 2481 2481 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MSMS UPN48_class_I_Rep_1 5 548.2946166992188 2 548.295299 1094.57605 NaN NaN NaN NaN NaN NaN NaN 42.456 1 45.964 45.464 46.464 3.5079 0 0 0 0.36857 1 7854 7854 7.1017 2.2047 1 1921 3252 1173 1175 2482 2482 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN48_class_I_Rep_2 6 548.2958984375 2 548.295299 1094.57605 0.42482 0.00023293 -0.0044433 -2.4363E-06 0.42037 0.00023049 548.2954489470224 41.87 0.29375 45.621 45.54 45.833 3.7508 45 29 2 0 0 0 0.074399 1 7683 7683 39.95 19.535 1 97345 1922 3252 1173 1175 2483 2483 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN48_class_I_Rep_3 7 548.2954711914062 2 548.295299 1094.57605 0.35687 0.00019567 -0.20473 -0.00011225 0.15214 8.3418E-05 548.295242908833 41.974 0.52872 45.62 45.409 45.938 3.6458 74 54 2 0 0 0 0.32682 1 7672 7672 12.241 5.5175 1 111340 1923 3252 1173 1175 2484 2484 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MATCH UPN48_class_I_Rep_2 6 2 548.295299 1094.57605 0.42606 0.00023361 -1.0236 -0.00056121 -0.59749 -0.0003276 548.2950585807337 41.744 0.10014 45.495 45.439 45.54 3.7509 -0.15371 -0.00050458 NaN 26.268 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 73003 1924 3252 1173 1175 0.032540294773070855 AYQLMTDVF 9 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ AYQLM(1)TDVF AYQLM(44)TDVF 0 0 1 ENSG00000055917.16,PUM2,chr2,-,I15.1,20283487,20290651|36|13.23|1|intron;ENSG00000055917.16,PUM2,chr2,-,I15.1,20283487,20290651|36|13.23|3|intron;ENSG00000055917.16,PUM2,chr2,-,I15.1,20283487,20290651|36|13.23|4|intron;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 ENSG00000055917.16,PUM2,chr2,-,I15.1,20283487,20290651|36|13.23|1|intron ENSG00000055917.16,PUM2,chr2,-,I15.1,20283487,20290651|36|13.23|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 552.2571411132812 2 552.257525 1102.5005 0.51794 0.00028603 -0.21114 -0.00011661 0.30679 0.00016943 552.2572275528995 65.825 0.58487 69.311 69.064 69.648 3.4866 61 38 2 0 0 0 0.062142 1 15020 15020 43.772 12.504 1 134240 1925 944 1174 1176 2485 2485 20 -0.04665315765282685 AYRHVPPRP 9 Unmodified _AYRHVPPRP_ 0 0 0 AluJb_dup55445|chr8:55922093-55922388:-|1.0766518925436812|0.0072737683379258|7.21|151.0|20|2|anti-sense AluJb_dup55445|chr8:55922093-55922388:-|1.0766518925436812|0.0072737683379258|7.21|151.0|20|2|anti-sense AluJb_dup55445|chr8:55922093-55922388:-|1.0766518925436812|0.0072737683379258|7.21|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_2 6 546.8060302734375 2 546.8067 1091.59885 NaN NaN NaN NaN NaN NaN NaN 50.28 1 53.975 53.475 54.475 3.6946 0 0 0 0.38299 1 10249 10249 4.756 0 1 1926 56 1175 1177 2486 2486 0.056710933854674295 AYRRHLLQR 9 Unmodified _AYRRHLLQR_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A MSMS UPN48_class_I_Rep_1 5 404.9065246582031 3 404.907262 1211.69996 NaN NaN NaN NaN NaN NaN NaN 41.363 1 44.869 44.369 45.369 3.506 0 0 0 0.38536 1 7531 7531 4.1895 0.31317 1 1927 732 1176 1178 2487 2487 0.10257545088165898 AYRRWRWRKRW 11 Unmodified _AYRRWRWRKRW_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS UPN46_class_I_Rep_3 1 573.990234375 3 573.990431 1718.94946 NaN NaN NaN NaN NaN NaN NaN 36.047 1 36.047 35.547 36.547 0 0 0 0 0.38417 1 6636 6636 0 0 1 + 1928 22718 1177 1179 2488 2488 0.11874727764552517 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS UPN48_class_I_Rep_1 5 492.28179931640625 2 492.28166 982.548768 0.28335 0.00013949 -0.054009 -2.6588E-05 0.22934 0.0001129 492.2816073797404 58.416 0.61417 61.903 61.517 62.131 3.487 65 35 2 0 0 0 0.021334 2 12708 12708;12751 62.573 14.824 1 210110 1929 5242 1178 1180 2489;2490 2489 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS UPN48_class_I_Rep_2 6 492.28155517578125 2 492.28166 982.548768 0.36135 0.00017788 0.10173 5.0081E-05 0.46308 0.00022797 492.28159634533966 58.26 0.75198 61.758 61.498 62.25 3.4987 68 42 2 0 0 0 0.023254 2 12710 12668;12710 61.357 15.337 1 228140 1930 5242 1178 1180 2491;2492 2492 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS UPN48_class_I_Rep_3 7 492.2817687988281 2 492.28166 982.548768 0.18586 9.1498E-05 0.031521 1.5517E-05 0.21739 0.00010701 492.28158933298914 58.209 0.66739 61.74 61.386 62.054 3.5317 80 43 2 0 0 0 0.082592 1 12585 12585 37.974 37.974 1 227640 1931 5242 1178 1180 2493 2493 0.05679545936948216 AYSEHYIEY 9 Unmodified _AYSEHYIEY_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MSMS UPN47_class_I_Rep_1 2 587.7567138671875 2 587.756204 1173.49785 NaN NaN NaN NaN NaN NaN NaN 38.361 1 42.026 41.526 42.526 3.6652 0 0 0 0.38478 1 7383 7383 4.3292 0.73274 1 + 1932 18583 1179 1181 2494 2494 -0.08195447898583552 AYSSYVHQY 9 Unmodified _AYSSYVHQY_ 0 0 0 ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 ENST00000592995.1_1_17:58538022-58538124:-|nuORF ENST00000592995.1_1_17:58538022-58538124:-|nuORF MSMS UPN47_class_I_Rep_1 2 559.2509155273438 2 559.251089 1116.48762 NaN NaN NaN NaN NaN NaN NaN 35.999 1 39.676 39.176 40.176 3.6762 0 0 0 0.36505 1 6668 6668 7.2892 0.56607 1 1933 978 1180 1182 2495 2495 -0.06596010833141008 AYSSYVHQY 9 Unmodified _AYSSYVHQY_ 0 0 0 ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 ENST00000592995.1_1_17:58538022-58538124:-|nuORF ENST00000592995.1_1_17:58538022-58538124:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 559.2508544921875 2 559.251089 1116.48762 0.045641 2.5525E-05 -0.11349 -6.3471E-05 -0.067851 -3.7946E-05 559.2511059938531 36.411 0.33838 39.822 39.621 39.959 3.4114 34 25 2 0 0 0 0.42249 1 6850 6850 6.7232 3.4419 1 62249 1934 978 1180 1182 2496 2496 -0.06596010833141008 AYSSYVHQY 9 Unmodified _AYSSYVHQY_ 0 0 0 ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 ENST00000592995.1_1_17:58538022-58538124:-|nuORF ENST00000592995.1_1_17:58538022-58538124:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 559.2503662109375 2 559.251089 1116.48762 -0.088421 -4.945E-05 -0.066867 -3.7395E-05 -0.15529 -8.6845E-05 559.2511720990145 36.527 0.4272 39.774 39.594 40.022 3.247 38 26 2 0 0 0 0.41259 2 6902 6862;6902 7.2892 3.1267 1 66679 1935 978 1180 1182 2497;2498 2498 -0.06596010833141008 AYSSYVHQY 9 Unmodified _AYSSYVHQY_ 0 0 0 ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 ENST00000592995.1_1_17:58538022-58538124:-|nuORF ENST00000592995.1_1_17:58538022-58538124:-|nuORF MSMS UPN48_class_I_Rep_1 5 559.2505493164062 2 559.251089 1116.48762 NaN NaN NaN NaN NaN NaN NaN 36.6 1 40.107 39.607 40.607 3.507 0 0 0 0.38639 1 6129 6129 3.9444 0.3479 1 1936 978 1180 1182 2499 2499 -0.06596010833141008 AYSSYVHQY 9 Unmodified _AYSSYVHQY_ 0 0 0 ENST00000592995.1_1_17:58538022-58538124:-|nuORF;ENSG00000062725|ENST00000083182|APPBP2 ENST00000592995.1_1_17:58538022-58538124:-|nuORF ENST00000592995.1_1_17:58538022-58538124:-|nuORF MSMS UPN48_class_I_Rep_2 6 559.2518310546875 2 559.251089 1116.48762 NaN NaN NaN NaN NaN NaN NaN 36.297 1 39.985 39.485 40.485 3.6877 0 0 0 0.36505 1 6084 6084 7.2892 0.56607 1 1937 978 1180 1182 2500 2500 -0.06596010833141008 AYSVKCITSGD 11 Unmodified _AYSVKCITSGD_ 0 0 0 REV__nc|ENSG00000136010|Q3SY69-3|ALDH1L2 REV__nc|ENSG00000136010|Q3SY69-3|ALDH1L2 MSMS UPN48_class_I_Rep_3 7 572.2719116210938 2 572.271164 1142.52777 NaN NaN NaN NaN NaN NaN NaN 60.46 1 63.977 63.477 64.477 3.5169 0 0 0 0.38417 1 13285 13285 2.7352 0.43246 1 + 1938 19168 1181 1183 2501 2501 -0.03778832224884354 AYSYKYRI 8 Unmodified _AYSYKYRI_ 0 0 0 REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|78|1|anti-sense REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|78|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 532.2815551757812 2 532.282192 1062.54983 0.32802 0.0001746 -0.89998 -0.00047904 -0.57196 -0.00030444 532.2815637605825 45.692 0.60172 49.208 48.975 49.576 3.5162 66 41 2 0 0 0 0.82752 1 8800 8800 15.847 1.9411 1 136620 + 1939 24266 1182 1184 2502 2502 0.021057603058579843 AYSYKYRI 8 Unmodified _AYSYKYRI_ 0 0 0 REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|78|1|anti-sense REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|78|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 532.282192 1062.54983 0.34571 0.00018402 -0.82178 -0.00043742 -0.47607 -0.0002534 532.2815815629234 45.438 0.61501 49.196 48.825 49.44 3.7579 -0.061666 7.2355E-05 NaN 15.847 73 49 2 NaN NaN NaN NaN 0 NaN NaN 0 142030 + 1940 24266 1182 1184 0.021057603058579843 AYTLLGHEFV 10 Unmodified _AYTLLGHEFV_ 0 0 0 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000425026.1_1_Y:10028050-10028227:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 574.8380126953125 2 575.300581 1148.58661 0.50761 0.00029203 -0.096562 -5.5552E-05 0.41105 0.00023648 575.300572286929 65.566 0.59944 69.046 68.766 69.365 3.4792 69 42 2 0 0 0 0.84575 1 14853 14853 8.7454 0 1 149510 1941 689 1183 1185 2503 2503 0.018260121317553057 AYTLLGHEFV 10 Unmodified _AYTLLGHEFV_ 0 0 0 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000425026.1_1_Y:10028050-10028227:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 575.300581 1148.58661 0.4976 0.00028627 -0.38511 -0.00022155 0.11249 6.4713E-05 575.3004653681572 65.699 0.47207 69.15 68.941 69.413 3.4516 0.10328 -0.00015996 NaN 8.7454 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 148950 1942 689 1183 1185 0.018260121317553057 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 MULTI-MSMS UPN48_class_I_Rep_1 5 509.7714538574219 2 509.77146 1017.52837 0.32832 0.00016737 -0.16938 -8.6344E-05 0.15895 8.1026E-05 509.7712450946073 57.396 0.79823 60.89 60.547 61.345 3.4942 153 69 3 0 0 0 0.019771 3 12435 12359;12397;12435 63.563 37.222 1 553010 1943 3099 1184 1186 2504;2505;2506 2506 0.0203037527712695 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 MULTI-MSMS UPN48_class_I_Rep_2 6 509.77142333984375 2 509.77146 1017.52837 0.42147 0.00021485 -0.25893 -0.000132 0.16254 8.2856E-05 509.7712293717126 57.32 0.82964 60.834 60.462 61.292 3.5142 117 68 3 0 0 0 0.019771 3 12409 12331;12372;12409 63.563 34.481 1 491370 1944 3099 1184 1186 2507;2508;2509 2509 0.0203037527712695 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 MULTI-MSMS UPN48_class_I_Rep_3 7 509.7713317871094 2 509.77146 1017.52837 0.19946 0.00010168 -0.0053234 -2.7137E-06 0.19414 9.8967E-05 509.77133525013386 57.212 0.84134 60.754 60.406 61.247 3.5427 198 80 3 0 0 0 0.0058965 3 12299 12227;12264;12299 81.864 47.762 1 579110 1945 3099 1184 1186 2510;2511;2512 2512 0.0203037527712695 AYTTGKLSF 9 Unmodified _AYTTGKLSF_ 0 0 0 ENSG00000129151|ENST00000263182|BBOX1 ENSG00000129151|ENST00000263182|BBOX1 ENSG00000129151|ENST00000263182|BBOX1 MULTI-MSMS UPN46_class_I_Rep_3 1 494.2608337402344 2 494.260925 986.507297 0.25843 0.00012773 0.014217 7.027E-06 0.27265 0.00013476 494.26084328955614 70.203 0.49836 70.203 69.882 70.38 0 101 56 2 0 0 0 0.25207 1 16091 16091 16.942 1.0951 1 616700 1946 2613 1185 1187 2513 2513 0.013503651776204606 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_1 5 560.7660522460938 2 560.765852 1119.51715 0.50468 0.00028301 -0.30577 -0.00017146 0.19891 0.00011154 560.7656349721055 33.826 1.291 37.346 36.855 38.146 3.5201 317 128 3 0 0 0 0.0055873 8 5444 5229;5263;5302;5337;5373;5409;5444;5477 104.8 62.96 1 541680 1947 3149 1186 1188 2514;2515;2516;2517;2518;2519;2520;2521 2520 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(67)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_1 5 560.764892578125 2 560.765852 1119.51715 0.47413 0.00026588 -0.37008 -0.00020753 0.10405 5.8347E-05 560.7655667743281 40.763 1.4669 44.269 43.487 44.954 3.506 186 130 2 0 0 0 0.013968 7 7210 7210;7244;7289;7322;7362;7410;7459 67.344 41.945 1 165500 1948 3149 1186 1188 2522;2523;2524;2525;2526;2527;2528 2522 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(93)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_2 6 560.76611328125 2 560.765852 1119.51715 0.48309 0.0002709 -0.24032 -0.00013476 0.24276 0.00013613 560.7656254199919 33.767 1.4363 37.428 36.819 38.255 3.6607 366 160 3 0 0 0 0.005134 9 5286 5218;5249;5286;5321;5354;5385;5419;5457;5491 104.8 62.96 1 475350 1949 3149 1186 1188 2529;2530;2531;2532;2533;2534;2535;2536;2537 2531 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(74)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_2 6 560.7655029296875 2 560.765852 1119.51715 0.44135 0.0002475 -0.22994 -0.00012894 0.21141 0.00011855 560.7656159770504 40.247 1.891 43.988 42.988 44.879 3.7413 301 193 2 0 0 0 0.0064682 7 7323 7173;7209;7221;7254;7288;7323;7363 74.423 45.316 1 166800 1950 3149 1186 1188 2538;2539;2540;2541;2542;2543;2544 2543 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_3 7 560.7662353515625 2 560.765852 1119.51715 0.32404 0.00018171 -0.13176 -7.3885E-05 0.19228 0.00010782 560.7656954291631 33.554 1.4402 37.234 36.738 38.178 3.6797 388 157 3 0 0 0 0.0055873 10 5139 5114;5139;5176;5210;5247;5281;5314;5346;5375;5410 117.6 67.666 1 553310 1951 3149 1186 1188 2545;2546;2547;2548;2549;2550;2551;2552;2553;2554 2546 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(51)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_3 7 560.7662353515625 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 39.737 1 43.393 42.893 43.893 3.6557 0 0 0 0.025567 1 6987 6987 50.855 25.456 1 1952 3149 1186 1188 2555 2555 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(51)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_3 7 560.765869140625 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.244 1 43.895 43.395 44.395 3.6509 0 0 0 0.025567 1 7134 7134 50.855 25.456 1 1953 3149 1186 1188 2556 2556 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(64)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_3 7 560.7660522460938 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.367 1 44.018 43.518 44.518 3.6509 0 0 0 0.00053226 1 7169 7169 64.236 40.216 1 1954 3149 1186 1188 2557 2557 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(48)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_3 7 560.765380859375 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.493 1 44.144 43.644 44.644 3.6509 0 0 0 0.027434 1 7208 7208 48.346 24.325 1 1955 3149 1186 1188 2558 2558 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(64)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_3 7 560.7650146484375 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.62 1 44.27 43.77 44.77 3.6509 0 0 0 0.00053226 1 7246 7246 64.236 33.6 1 1956 3149 1186 1188 2559 2559 99 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(97)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_3 7 560.7666015625 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.688 1 44.338 43.838 44.838 3.6509 0 0 0 5.4356000000000004E-24 1 7267 7267 97.075 53.216 1 1957 3149 1186 1188 2560 2560 99 -0.03782770088673715 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_1 5 552.7687377929688 2 552.768394 1103.52224 0.50782 0.00028071 0.11648 6.4388E-05 0.6243 0.00034509 552.7684673878323 43.968 0.96539 47.481 47.088 48.054 3.5132 143 73 3 0 0 0 0.005134 6 8307 8229;8269;8307;8348;8392;8439 92.822 50.983 1 390440 1958 3149 1186 1189 2561;2562;2563;2564;2565;2566 2563 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_2 6 552.769287109375 2 552.768394 1103.52224 0.41867 0.00023142 0.11664 6.4473E-05 0.5353 0.0002959 552.7684419106428 43.671 0.9352 47.433 47.038 47.973 3.7617 161 73 3 0 0 0 0.0064682 7 8146 8131;8146;8183;8224;8264;8306;8316 97.075 55.235 1 473320 1959 3149 1186 1189 2567;2568;2569;2570;2571;2572;2573 2568 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_3 7 552.7684936523438 2 552.768394 1103.52224 0.30295 0.00016746 0.068112 3.765E-05 0.37106 0.00020511 552.7683959827425 43.753 0.9786 47.392 47.046 48.025 3.6385 141 65 3 0 0 0 0.005134 5 8201 8111;8154;8201;8240;8280 92.822 50.983 1 338600 1960 3149 1186 1189 2574;2575;2576;2577;2578 2576 -0.025384662260421464 AYVLVENRK 9 Unmodified _AYVLVENRK_ 0 0 0 REV__L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|7|2|sense REV__L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 546.3131103515625 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 50.3 1 53.921 53.421 54.421 3.621 0 0 0 0.381 1 10190 10190 5.2307 0.90143 1 + 1961 26389 1187 1190 2579 2579 0.07181120742939129 AYVPGFAHI 9 Unmodified _AYVPGFAHI_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.7587585449219 2 487.758352 973.502152 0.23139 0.00011286 0.38144 0.00018605 0.61283 0.00029891 487.75827131951974 56.697 0.64367 60.198 59.842 60.485 3.5014 79 54 2 0 0 0 0.2896 2 12210 12210;12219 14.582 2.0501 1 244840 1962 1838 1188 1191 2580;2581 2580 0.01434106105648425 AYVPGFAHI 9 Unmodified _AYVPGFAHI_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 487.75836181640625 2 487.758352 973.502152 0.36697 0.00017899 0.31365 0.00015299 0.68062 0.00033198 487.758266997617 56.613 0.6787 60.147 59.867 60.546 3.5333 97 63 2 0 0 0 0.2896 2 12169 12169;12179 14.582 2.0501 1 156600 1963 1838 1188 1191 2582;2583 2582 0.01434106105648425 AYVPGFAHI 9 Unmodified _AYVPGFAHI_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 487.7584228515625 2 487.758352 973.502152 0.14108 6.8815E-05 0.5016 0.00024466 0.64268 0.00031347 487.758414481362 56.572 0.59156 60.115 59.83 60.422 3.5427 70 55 2 0 0 0 0.19841 2 12104 12104;12166 20.871 8.3397 1 198010 1964 1838 1188 1191 2584;2585 2584 0.01434106105648425 AYWPEPQW 8 Unmodified _AYWPEPQW_ 0 0 0 REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|118|1|anti-sense REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|118|1|anti-sense MSMS UPN46_class_I_Rep_3 1 538.7459106445312 2 538.745442 1075.47633 NaN NaN NaN NaN NaN NaN NaN 111.87 1 111.87 111.37 112.37 0 0 0 0 0.40738 1 27600 27600 0.79363 0 1 + 1965 29461 1189 1192 2586 2586 -0.058387881366115835 AYYLAVQNW 9 Unmodified _AYYLAVQNW_ 0 0 0 REV__ENST00000491118.1_1_10:70138969-70141006:-|nuORF REV__ENST00000491118.1_1_10:70138969-70141006:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.2763061523438 2 564.279649 1126.54475 NaN NaN NaN NaN NaN NaN NaN 23.696 1 27.261 26.761 27.761 3.5655 0 0 0 0.39518 1 2509 2509 1.8442 0.36234 1 + 1966 22628 1190 1193 2587 2587 -0.01346543556769575 AYYQFLAF 8 Unmodified _AYYQFLAF_ 0 0 0 REV__ENSG00000060642|ENST00000674202|PIGV REV__ENSG00000060642|ENST00000674202|PIGV MSMS UPN46_class_I_Rep_3 1 511.75091552734375 2 511.752736 1021.49092 NaN NaN NaN NaN NaN NaN NaN 86.192 1 86.192 85.692 86.692 0 0 0 0 0.38547 1 20601 20601 13.508 1.2672 1 + 1967 17723 1191 1194 2588 2588 -0.018967159884709872 AYYYKLRK 8 Unmodified _AYYYKLRK_ 0 0 0 REV__ENST00000202816.5_1_20:13752057-13752114:-|nuORF REV__ENST00000202816.5_1_20:13752057-13752114:-|nuORF MSMS UPN47_class_I_Rep_1 2 552.8140869140625 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 21.308 1 24.952 24.452 25.452 3.6436 0 0 0 0.40738 1 2290 2290 0.79363 0.10326 1 + 1968 18000 1192 1195 2589 2589 0.06510326093894037 AYYYRKFF 8 Unmodified _AYYYRKFF_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 MSMS UPN46_class_I_Rep_3 1 579.4425048828125 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 89.625 1 89.625 89.125 90.125 0 0 0 0 0.40738 1 21569 21569 0.79363 0.10326 1 1969 2204 1193 1196 2590 2590 -0.0014564931448148855 AYYYRKFF 8 Unmodified _AYYYRKFF_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 MSMS UPN47_class_I_Rep_2 3 579.695068359375 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 111.81 1 115.34 114.84 115.84 3.5226 0 0 0 0.40738 1 27227 27227 0.79363 0.10326 1 1970 2204 1193 1196 2591 2591 -0.0014564931448148855 AYYYRKFF 8 Unmodified _AYYYRKFF_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 MSMS UPN47_class_I_Rep_3 4 579.2811889648438 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 33.486 1 36.76 36.26 37.26 3.2748 0 0 0 0.40738 1 5975 5975 0.79363 0.10326 1 1971 2204 1193 1196 2592 2592 -0.0014564931448148855 AYYYRKFF 8 Unmodified _AYYYRKFF_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 MSMS UPN48_class_I_Rep_3 7 579.2932739257812 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 113.02 1 116.68 116.18 117.18 3.6568 0 0 0 0.40738 1 26866 26866 0.79363 0.19213 1 1972 2204 1193 1196 2593 2593 -0.0014564931448148855 CAAITTIYFL 10 Unmodified _CAAITTIYFL_ 0 0 0 L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|41|2|anti-sense L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|41|2|anti-sense L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2786865234375 2 558.293911 1114.57327 0.47928 0.00026758 -1.1759 -0.0006565 -0.69662 -0.00038892 558.2930874561761 77.613 0.23349 80.945 80.901 81.135 3.3315 33 25 2 0 0 0 0.47413 1 19251 19251 13.906 0.86358 1 52022 1973 10687 1194 1197 2594 2594 0.020564380281712147 CAAITTIYFL 10 Unmodified _CAAITTIYFL_ 0 0 0 L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|41|2|anti-sense L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|41|2|anti-sense L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_3 4 558.2948608398438 2 558.293911 1114.57327 NaN NaN NaN NaN NaN NaN NaN 77.597 1 80.865 80.365 81.365 3.269 0 0 0 0.53105 1 19331 19331 13.906 0.86358 1 1974 10687 1194 1197 2595 2595 0.020564380281712147 CAAWSYQA 8 Unmodified _CAAWSYQA_ 0 0 0 REV__L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|148|2|anti-sense REV__L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|148|2|anti-sense MSMS UPN48_class_I_Rep_2 6 450.1884765625 2 450.189445 898.364338 NaN NaN NaN NaN NaN NaN NaN 52.862 1 56.472 55.972 56.972 3.6098 0 0 0 0.40738 1 11024 11024 0.79363 0 1 + 1975 29194 1195 1198 2596 2596 -0.08890965485272773 CAEEIIEFPI 10 Unmodified _CAEEIIEFPI_ 0 0 0 chr1:44319744-44355260|123|13.22|0.0|20.33|-|0|ERI3,ERI3|1 chr1:44319744-44355260|123|13.22|0.0|20.33|-|0|ERI3,ERI3|1 chr1:44319744-44355260|123|13.22|0.0|20.33|-|0|ERI3,ERI3|1 MSMS UPN47_class_I_Rep_2 3 582.3011474609375 2 582.286282 1162.55801 NaN NaN NaN NaN NaN NaN NaN 60.182 1 63.455 62.955 63.955 3.2731 0 0 0 0.53105 1 14064 14064 3.5965 0 1 1976 569 1196 1199 2597 2597 -0.01676473559700753 CAHWGWQVSPW 11 Unmodified _CAHWGWQVSPW_ 0 0 0 ENST00000459892.5_1_2:26533861-26534227:-|nuORF ENST00000459892.5_1_2:26533861-26534227:-|nuORF ENST00000459892.5_1_2:26533861-26534227:-|nuORF MSMS UPN48_class_I_Rep_1 5 452.8702392578125 3 452.869597 1355.58696 NaN NaN NaN NaN NaN NaN NaN 86.892 1 90.505 90.005 91.005 3.613 0 0 0 0.38417 1 20818 20818 0.50596 0.09769 1 1977 6851 1197 1200 2598 2598 -0.07660891420027838 CAILCYLSC 9 Unmodified _CAILCYLSC_ 0 0 0 L1MEd_dup20538|chr20:35480485-35480579:-|1.023289558711494|0.0129559949282358|6.3|151.0|9|3|anti-sense L1MEd_dup20538|chr20:35480485-35480579:-|1.023289558711494|0.0129559949282358|6.3|151.0|9|3|anti-sense L1MEd_dup20538|chr20:35480485-35480579:-|1.023289558711494|0.0129559949282358|6.3|151.0|9|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.7189025878906 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 116.16 1 119.79 119.29 120.29 3.6312 0 0 0 0.39428 1 27646 27646 2.0598 1.2661 1 1978 13196 1198 1201 2599 2599 -0.0714336822666155 CAISIKYRF 9 Unmodified _CAISIKYRF_ 0 0 0 MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.7994995117188 2 550.799694 1099.58484 -0.093273 -5.1375E-05 0.053432 2.9431E-05 -0.03984 -2.1944E-05 550.7998568125255 13.175 0.16731 16.632 16.568 16.735 3.457 27 18 2 0 0 0 0.48846 1 268 268 1.8442 0.19162 1 29102 1979 15918 1199 1202 2600 2600 0.039026798421446074 CAISIKYRF 9 Unmodified _CAISIKYRF_ 0 0 0 MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 550.799694 1099.58484 -0.093273 -5.1375E-05 0.053432 2.9431E-05 -0.03984 -2.1944E-05 550.7998568125255 13.175 0.16731 16.632 16.568 16.735 3.457 -0.10851 -0.00049831 NaN 1.8442 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 29102 1980 15918 1199 1202 0.039026798421446074 CAISIKYRF 9 Unmodified _CAISIKYRF_ 0 0 0 MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MER33_dup6676|chr12:104699233-104699536:+|1.4320577732203337|0.0027389342246202|9.03|151.0|6|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 550.799694 1099.58484 0.035238 1.9409E-05 1.2319 0.00067855 1.2672 0.00069796 550.801438855306 13.539 0.065048 16.927 16.886 16.951 3.388 0.18668 0.00079994 NaN 1.8442 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 15036 1981 15918 1199 1202 0.039026798421446074 CALSLPSGTRT 11 Unmodified _CALSLPSGTRT_ 0 0 0 REV__nc|ENSG00000185634|Q6S5L8-2|SHC4 REV__nc|ENSG00000185634|Q6S5L8-2|SHC4 MULTI-MSMS UPN48_class_I_Rep_1 5 553.7891845703125 2 553.287148 1104.55974 0.53389 0.0002954 0.51307 0.00028388 1.047 0.00057927 553.2873437203585 75.677 0.54028 79.176 78.876 79.416 3.4996 87 51 2 0 0 0 0.37961 1 17899 17899 10.8 2.644 1 143430 + 1982 32085 1200 1203 2601 2601 0.011645802489283597 CALSLPSGTRT 11 Unmodified _CALSLPSGTRT_ 0 0 0 REV__nc|ENSG00000185634|Q6S5L8-2|SHC4 REV__nc|ENSG00000185634|Q6S5L8-2|SHC4 MULTI-MSMS UPN48_class_I_Rep_2 6 553.28857421875 2 553.287148 1104.55974 0.48726 0.00026959 0.85219 0.00047151 1.3394 0.0007411 553.2876281431711 75.47 0.14056 79.071 78.955 79.096 3.6011 28 16 2 0 0 0 0.37961 1 17798 17798 10.8 1.4164 1 182220 + 1983 32085 1200 1203 2602 2602 0.011645802489283597 CALSLPSGTRT 11 Unmodified _CALSLPSGTRT_ 0 0 0 REV__nc|ENSG00000185634|Q6S5L8-2|SHC4 REV__nc|ENSG00000185634|Q6S5L8-2|SHC4 MULTI-MSMS UPN48_class_I_Rep_3 7 553.287841796875 2 553.287148 1104.55974 0.43094 0.00023843 0.564 0.00031206 0.99494 0.00055049 553.2873659578804 75.571 0.64857 79.137 78.82 79.468 3.5659 116 68 2 0 0 0 0.37961 1 17761 17761 10.8 0.72558 1 176570 + 1984 32085 1200 1203 2603 2603 0.011645802489283597 CAQYSDFGCCD 11 Unmodified _CAQYSDFGCCD_ 0 0 0 nc|ENSG00000182218|Q96JK4-2|HHIPL1;ENSG00000182218|ENST00000330710|HHIPL1 nc|ENSG00000182218|Q96JK4-2|HHIPL1 nc|ENSG00000182218|Q96JK4-2|HHIPL1 MSMS UPN48_class_I_Rep_2 6 404.4638671875 3 404.46492 1210.37293 NaN NaN NaN NaN NaN NaN NaN 66.93 1 70.426 69.926 70.926 3.4964 0 0 0 0.38417 1 15329 15329 0.094841 0.094841 1 1985 4941 1201 1204 2604 2604 -0.22384147693264822 CASGGAIAKPL 11 Unmodified _CASGGAIAKPL_ 0 0 0 REV__ENST00000325279.4_1_16:84693236-84695736:+|nuORF REV__ENST00000325279.4_1_16:84693236-84695736:+|nuORF MSMS UPN47_class_I_Rep_1 2 494.26910400390625 2 494.268227 986.521901 NaN NaN NaN NaN NaN NaN NaN 37.88 1 41.545 41.045 42.045 3.6652 0 0 0 0.38417 1 7239 7239 1.0715 0.27783 1 + 1986 19150 1202 1205 2605 2605 0.02810114054091173 CASIEASIKY 10 Unmodified _CASIEASIKY_ 0 0 0 REV__L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|180|3|anti-sense REV__L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|180|3|anti-sense MSMS UPN47_class_I_Rep_1 2 542.7730102539062 2 542.7708 1083.52705 NaN NaN NaN NaN NaN NaN NaN 61.464 1 64.846 64.346 65.346 3.3815 0 0 0 0.53105 1 14415 14415 3.2813 0.39209 1 + 1987 24369 1203 1206 2606 2606 -0.011376268739468287 CAVHALFL 8 Unmodified _CAVHALFL_ 0 0 0 nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 MSMS UPN47_class_I_Rep_1 2 437.23541259765625 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 51.073 1 54.667 54.167 55.167 3.5932 0 0 0 0.40738 1 11254 11254 0.79363 0 1 1988 1947 1204 1207 2607 2607 0.016513786878022074 CAYFCYYDE 9 Unmodified _CAYFCYYDE_ 0 0 0 REV__Tigger1_dup413|chr1:101014288-101016073:-|1.9736080063333308|0.2451274078875792|3.01|151.0|35|2|sense REV__Tigger1_dup413|chr1:101014288-101016073:-|1.9736080063333308|0.2451274078875792|3.01|151.0|35|2|sense MSMS UPN48_class_I_Rep_2 6 588.70361328125 2 588.704268 1175.39398 NaN NaN NaN NaN NaN NaN NaN 119.89 1 123.56 123.06 124.06 3.6652 0 0 0 0.4007 1 28779 28779 0.52476 0.12405 1 + 1989 32435 1205 1208 2608 2608 -0.18669814322106504 CCCCCCGRF 9 Unmodified _CCCCCCGRF_ 0 0 0 REV__L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|242|1|anti-sense REV__L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|242|1|anti-sense MSMS UPN48_class_I_Rep_3 7 499.27679443359375 2 499.135607 996.25666 NaN NaN NaN NaN NaN NaN NaN 42.935 1 46.576 46.076 47.076 3.6415 0 0 0 0.4029 1 7928 7928 0 0 1 + 1990 25237 1206 1209 2609 2609 -0.24161784270154385 CCCCCCRWCTS 11 Unmodified _CCCCCCRWCTS_ 0 0 0 ENST00000519715.1_1_5:140012405-140013200:-|nuORF ENST00000519715.1_1_5:140012405-140013200:-|nuORF ENST00000519715.1_1_5:140012405-140013200:-|nuORF MSMS UPN48_class_I_Rep_1 5 635.6746826171875 2 635.67477 1269.33499 NaN NaN NaN NaN NaN NaN NaN 82.934 1 86.521 86.021 87.021 3.5871 0 0 0 0.38417 1 19820 19820 0 0 1 1991 7222 1207 1210 2610 2610 -0.2889071974725539 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS UPN46_class_I_Rep_3 1 504.80889892578125 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 38.602 1 38.602 38.102 39.102 0 0 0 0 0.53105 1 7361 7361 0 0 1 1992 4453 1208 1211 2611 2611 -0.30998394848859334 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS UPN46_class_I_Rep_3 1 505.5882263183594 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 88.364 1 88.364 87.864 88.864 0 0 0 0 0.53105 1 21218 21218 0 0 1 1993 4453 1208 1211 2612 2612 -0.30998394848859334 CCCCCEECGG 10 Unmodified _CCCCCEECGG_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MSMS UPN46_class_I_Rep_3 1 505.1050109863281 2 505.104169 1008.19379 NaN NaN NaN NaN NaN NaN NaN 96.327 1 96.327 95.827 96.827 0 0 0 0 0.53105 1 23421 23421 0 0 1 1994 4453 1208 1211 2613 2613 -0.30998394848859334 CCCCCFDCLMC 11 Unmodified _CCCCCFDCLMC_ 0 0 0 REV__L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|53|3|anti-sense REV__L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|53|3|anti-sense MSMS UPN46_class_I_Rep_3 1 623.6529541015625 2 623.654657 1245.29476 NaN NaN NaN NaN NaN NaN NaN 93.837 1 93.837 93.337 94.337 0 0 0 0 0.38417 1 22753 22753 0 0 1 + 1995 24590 1209 1212 2614 2614 -0.3180740246202731 CCCCCFFT 8 Unmodified _CCCCCFFT_ 0 0 0 REV__L1ME4b_dup21702|chr22:36381532-36382010:-|2.2550933215604574|0.0637465350475612|5.14|151.0|33|3|anti-sense REV__L1ME4b_dup21702|chr22:36381532-36382010:-|2.2550933215604574|0.0637465350475612|5.14|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 465.1266174316406 2 465.127773 928.240993 NaN NaN NaN NaN NaN NaN NaN 73.534 1 73.534 73.034 74.034 0 0 0 0 0.40746 1 17048 17048 0.69038 0 1 + 1996 28286 1210 1213 2615 2615 -0.22599747515550916 CCCCCFGD 8 Unmodified _CCCCCFGD_ 0 0 0 AluJb_dup84332|chr12:66193919-66194204:-|2.6240048750923517|0.1150620587304879|4.51|151.0|17|3|anti-sense AluJb_dup84332|chr12:66193919-66194204:-|2.6240048750923517|0.1150620587304879|4.51|151.0|17|3|anti-sense AluJb_dup84332|chr12:66193919-66194204:-|2.6240048750923517|0.1150620587304879|4.51|151.0|17|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 426.7643737792969 2 427.09393 852.173308 0.10973 4.6864E-05 0.11573 4.9427E-05 0.22546 9.6291E-05 427.09249110165104 60.26 0.13857 63.776 63.726 63.865 3.5169 18 12 2 0 0 0 0.72333 1 13230 13230 0 0 1 36799 1997 73 1211 1214 2616 2616 -0.2586919744636589 CCCCCPCCSA 10 Unmodified _CCCCCPCCSA_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MSMS UPN46_class_I_Rep_3 1 498.340087890625 2 498.105658 994.196762 NaN NaN NaN NaN NaN NaN NaN 38.005 1 38.005 37.505 38.505 0 0 0 0 0.53105 1 7199 7199 0 0 1 + 1998 20780 1212 1215 2617 2617 -0.3005684299571385 CCCCCPCCSA 10 Unmodified _CCCCCPCCSA_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MSMS UPN46_class_I_Rep_3 1 498.106201171875 2 498.105658 994.196762 NaN NaN NaN NaN NaN NaN NaN 50.519 1 50.519 50.019 51.019 0 0 0 0 0.53105 1 10679 10679 0 0 1 + 1999 20780 1212 1215 2618 2618 -0.3005684299571385 CCCCCPCCSA 10 Unmodified _CCCCCPCCSA_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MSMS UPN48_class_I_Rep_1 5 498.1037902832031 2 498.105658 994.196762 NaN NaN NaN NaN NaN NaN NaN 71.413 1 74.879 74.379 75.379 3.466 0 0 0 0.53105 1 16693 16693 0 0 1 + 2000 20780 1212 1215 2619 2619 -0.3005684299571385 CCCCCPCCSA 10 Unmodified _CCCCCPCCSA_ 0 0 0 REV__ENSG00000183307|ENST00000331437|TMEM121B REV__ENSG00000183307|ENST00000331437|TMEM121B MSMS UPN48_class_I_Rep_1 5 498.1037902832031 2 498.105658 994.196762 NaN NaN NaN NaN NaN NaN NaN 87.595 1 91.214 90.714 91.714 3.6187 0 0 0 0.53105 1 20992 20992 0 0 1 + 2001 20780 1212 1215 2620 2620 -0.3005684299571385 CCCCQEAPHN 10 Unmodified _CCCCQEAPHN_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MSMS UPN48_class_I_Rep_3 7 554.1759643554688 2 554.177372 1106.34019 NaN NaN NaN NaN NaN NaN NaN 24.581 1 28.35 27.85 28.85 3.769 0 0 0 0.53105 1 2867 2867 0.45834 0 1 + 2002 19111 1213 1216 2621 2621 -0.2087263329713096 CCCEHEYKY 9 Unmodified _CCCEHEYKY_ 0 0 0 L1MB3_dup7978|chr8:123385565-123386691:+|1.211807634685187|0.0151084071314248|6.33|151.0|65|3|anti-sense L1MB3_dup7978|chr8:123385565-123386691:+|1.211807634685187|0.0151084071314248|6.33|151.0|65|3|anti-sense L1MB3_dup7978|chr8:123385565-123386691:+|1.211807634685187|0.0151084071314248|6.33|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_3 4 589.208984375 2 589.209195 1176.40384 NaN NaN NaN NaN NaN NaN NaN 30.406 1 33.717 33.217 34.217 3.3116 0 0 0 0.4007 1 5043 5043 0.52476 0 1 2003 10457 1214 1217 2622 2622 -0.17730949588371914 CCCFKIVP 8 Unmodified _CCCFKIVP_ 0 0 0 REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|59|1|anti-sense REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.7110900878906 2 456.710645 911.406737 NaN NaN NaN NaN NaN NaN NaN 118.11 1 121.6 121.1 122.1 3.4822 0 0 0 0.40746 1 28890 28890 0.69038 0 1 + 2004 24729 1215 1218 2623 2623 -0.052510296728996764 CCCFYFDCLY 10 Unmodified _CCCFYFDCLY_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 640.2197875976562 2 640.218174 1278.42179 0.43995 0.00028166 -0.87113 -0.00055771 -0.43118 -0.00027605 640.2179558011592 64.484 0.19962 67.839 67.682 67.882 3.3557 41 21 2 0 0 0 0.51565 2 15311 15292;15311 10.074 3.8681 1 228960 + 2005 28346 1216 1219 2624;2625 2625 -0.2062795065787668 CCCFYFDCLY 10 Unmodified _CCCFYFDCLY_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 640.2183837890625 2 640.218174 1278.42179 NaN NaN NaN NaN NaN NaN NaN 65.076 1 68.432 67.932 68.932 3.3557 0 0 0 0.53105 1 15497 15497 10.074 6.4774 1 + 2006 28346 1216 1219 2626 2626 -0.2062795065787668 CCCFYFDCLY 10 Unmodified _CCCFYFDCLY_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 640.216552734375 2 640.218174 1278.42179 NaN NaN NaN NaN NaN NaN NaN 65.101 1 68.456 67.956 68.956 3.3557 0 0 0 0.53105 1 15505 15505 3.5965 2.1146 1 + 2007 28346 1216 1219 2627 2627 -0.2062795065787668 CCCFYFDCLY 10 Unmodified _CCCFYFDCLY_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 640.2176513671875 2 640.218174 1278.42179 NaN NaN NaN NaN NaN NaN NaN 65.253 1 68.609 68.109 69.109 3.3557 0 0 0 0.53105 1 15552 15552 1.8442 1.2427 1 + 2008 28346 1216 1219 2628 2628 -0.2062795065787668 CCCFYFDCLY 10 Unmodified _CCCFYFDCLY_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 640.2173461914062 2 640.218174 1278.42179 NaN NaN NaN NaN NaN NaN NaN 65.522 1 68.778 68.278 69.278 3.2556 0 0 0 0.53105 1 15682 15682 3.9444 2.2918 1 + 2009 28346 1216 1219 2629 2629 -0.2062795065787668 CCCFYFDCLY 10 Unmodified _CCCFYFDCLY_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_3 4 640.2183837890625 2 640.218174 1278.42179 NaN NaN NaN NaN NaN NaN NaN 65.574 1 68.753 68.253 69.253 3.1795 0 0 0 0.53105 1 15757 15757 6.7232 5.0705 1 + 2010 28346 1216 1219 2630 2630 -0.2062795065787668 CCCKSNQLRW 10 Unmodified _CCCKSNQLRW_ 0 0 0 REV__L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|171|3|anti-sense REV__L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|171|3|anti-sense MSMS UPN47_class_I_Rep_1 2 620.7706298828125 2 620.772828 1239.5311 NaN NaN NaN NaN NaN NaN NaN 26.584 1 30.346 29.846 30.846 3.7624 0 0 0 0.53105 1 3824 3824 1.4819 0.68827 1 + 2011 29905 1217 1220 2631 2631 -0.07908183923518664 CCCNCCCCLCC 11 Unmodified _CCCNCCCCLCC_ 0 0 0 REV__ENSG00000147570|ENST00000276570|DNAJC5B REV__ENSG00000147570|ENST00000276570|DNAJC5B MSMS UPN46_class_I_Rep_3 1 587.1178588867188 2 587.117385 1172.22022 NaN NaN NaN NaN NaN NaN NaN 32.907 1 32.907 32.407 33.407 0 0 0 0 0.38417 1 5691 5691 0 0 1 + 2012 19571 1218 1221 2632 2632 -0.35900488545030385 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN46_class_I_Rep_3 1 506.1045837402344 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 71.736 1 71.736 71.236 72.236 0 0 0 0 0.53105 1 16543 16543 0 0 1 2013 6818 1219 1222 2633 2633 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN46_class_I_Rep_3 1 505.8072204589844 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 90.108 1 90.108 89.608 90.608 0 0 0 0 0.53105 1 21715 21715 0 0 1 2014 6818 1219 1222 2634 2634 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN46_class_I_Rep_3 1 506.10504150390625 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 98.091 1 98.091 97.591 98.591 0 0 0 0 0.53105 1 23880 23880 0 0 1 2015 6818 1219 1222 2635 2635 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN46_class_I_Rep_3 1 506.10552978515625 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 103.73 1 103.73 103.23 104.23 0 0 0 0 0.53105 1 25308 25308 0 0 1 2016 6818 1219 1222 2636 2636 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN48_class_I_Rep_1 5 505.7649841308594 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 28.002 1 31.559 31.059 32.059 3.5571 0 0 0 0.53105 1 3687 3687 0 0 1 2017 6818 1219 1222 2637 2637 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN48_class_I_Rep_2 6 505.75048828125 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 34.689 1 38.363 37.863 38.863 3.6735 0 0 0 0.53105 1 5620 5620 0 0 1 2018 6818 1219 1222 2638 2638 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN48_class_I_Rep_2 6 506.3219299316406 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 76.995 1 80.606 80.106 81.106 3.6116 0 0 0 0.53105 1 18200 18200 0 0 1 2019 6818 1219 1222 2639 2639 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN48_class_I_Rep_3 7 505.75244140625 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 36.183 1 39.85 39.35 40.35 3.6667 0 0 0 0.53105 1 5958 5958 0 0 1 2020 6818 1219 1222 2640 2640 -0.3130114685832268 CCCPCCSCCS 10 Unmodified _CCCPCCSCCS_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN48_class_I_Rep_3 7 506.2229919433594 2 506.103115 1010.19168 NaN NaN NaN NaN NaN NaN NaN 81.819 1 85.504 85.004 86.004 3.685 0 0 0 0.53105 1 19382 19382 0 0 1 2021 6818 1219 1222 2641 2641 -0.3130114685832268 CCCPIIPLE 9 Unmodified _CCCPIIPLE_ 0 0 0 L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|367|3|anti-sense L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|367|3|anti-sense L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|367|3|anti-sense MSMS UPN46_class_I_Rep_3 1 495.72686767578125 2 495.726492 989.438431 NaN NaN NaN NaN NaN NaN NaN 94.841 1 94.841 94.341 95.341 0 0 0 0 0.4007 1 23012 23012 0.52476 0.52476 1 2022 14337 1220 1223 2642 2642 -0.05671081709601822 CCCPYLHL 8 Unmodified _CCCPYLHL_ 0 0 0 REV__L1PREC2_dup575|chr2:24108924-24110325:+|1.5048583890055691|0.2541788947830014|2.57|151.0|48|1|anti-sense REV__L1PREC2_dup575|chr2:24108924-24110325:+|1.5048583890055691|0.2541788947830014|2.57|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.1980285644531 2 476.197902 950.38125 NaN NaN NaN NaN NaN NaN NaN 41.086 1 44.593 44.093 45.093 3.506 0 0 0 0.40738 1 7447 7447 0.79363 0 1 + 2023 29340 1221 1224 2643 2643 -0.09592504195313722 CCDCQDTTDEC 11 Unmodified _CCDCQDTTDEC_ 0 0 0 nc|ENSG00000099139|Q92824|PCSK5;ENSG00000099139|ENST00000674117|PCSK5 nc|ENSG00000099139|Q92824|PCSK5 nc|ENSG00000099139|Q92824|PCSK5 MSMS UPN47_class_I_Rep_1 2 618.168701171875 2 618.169606 1234.32466 NaN NaN NaN NaN NaN NaN NaN 117.97 1 121.57 121.07 122.07 3.6036 0 0 0 0.38417 1 29259 29259 0 0 1 2024 1430 1222 1225 2644 2644 -0.28313009395469635 CCDFCPCICT 10 Unmodified _CCDFCPCICT_ 0 0 0 L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|88|1|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|88|1|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|88|1|anti-sense MSMS UPN47_class_I_Rep_2 3 554.1759033203125 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 24.236 1 27.702 27.202 28.202 3.4655 0 0 0 0.53105 1 3182 3182 0.40072 0.40072 1 2025 15372 1223 1226 2645 2645 -0.21256439115177272 CCDFCPCICT 10 Unmodified _CCDFCPCICT_ 0 0 0 L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|88|1|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|88|1|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|88|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.1766967773438 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 30.203 1 33.515 33.015 34.015 3.3116 0 0 0 0.53105 1 4982 4982 0.40072 0.40072 1 2026 15372 1223 1226 2646 2646 -0.21256439115177272 CCDHAHCCW 9 Unmodified _CCDHAHCCW_ 0 0 0 REV__ENSG00000188784|ENST00000375116|PLA2G2E REV__ENSG00000188784|ENST00000375116|PLA2G2E MSMS UPN47_class_I_Rep_1 2 538.7907104492188 2 539.161525 1076.3085 NaN NaN NaN NaN NaN NaN NaN 52.331 1 55.89 55.39 56.39 3.5585 0 0 0 0.4029 1 11635 11635 0 0 1 + 2027 19851 1224 1227 2647 2647 -0.22660581260424806 CCDHGCTH 8 Unmodified _CCDHGCTH_ 0 0 0 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 MULTI-SECPEP UPN46_class_I_Rep_3 1 438.13372802734375 2 438.13329 874.252027 0.12087 5.2955E-05 0.88484 0.00038768 1.0057 0.00044063 438.1334034070259 46.04 0.22852 46.04 45.944 46.173 0 50 24 3 0 0 0 0.72333 1 9388 9388 0.69038 0.69038 1 349350 + 2028 19934 1225 1228 2648 2648 -0.1901288582540701 CCECEASPNTW 11 Unmodified _CCECEASPNTW_ 0 0 0 THE1B_dup10564|chr7:152397606-152397955:+|1.2369349588337926|0.0056193120978429|7.78|151.0|15|3|sense THE1B_dup10564|chr7:152397606-152397955:+|1.2369349588337926|0.0056193120978429|7.78|151.0|15|3|sense THE1B_dup10564|chr7:152397606-152397955:+|1.2369349588337926|0.0056193120978429|7.78|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 621.717529296875 2 621.714841 1241.41513 NaN NaN NaN NaN NaN NaN NaN 117.08 1 120.69 120.19 121.19 3.6036 0 0 0 0.38417 1 29015 29015 1.3295 0.72803 1 2029 32876 1226 1229 2649 2649 -0.19592172284910703 CCEDGMRENPM 11 Unmodified _CCEDGMRENPM_ 0 0 0 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MSMS UPN48_class_I_Rep_1 5 642.7254028320312 2 642.727426 1283.4403 NaN NaN NaN NaN NaN NaN NaN 96.484 1 100.1 99.597 100.6 3.6124 0 0 0 0.38417 1 23245 23245 1.4819 0.8804 1 2030 2512 1227 1230 2650 2650 -0.1900844075396435 CCFCCCCFEME 11 Unmodified _CCFCCCCFEME_ 0 0 0 AluSx3_dup1531|chr1:110900359-110900655:-|1.0659266236578069|0.0252199744711181|5.4|151.0|18|3|anti-sense AluSx3_dup1531|chr1:110900359-110900655:-|1.0659266236578069|0.0252199744711181|5.4|151.0|18|3|anti-sense AluSx3_dup1531|chr1:110900359-110900655:-|1.0659266236578069|0.0252199744711181|5.4|151.0|18|3|anti-sense MSMS UPN47_class_I_Rep_3 4 440.7661437988281 3 440.783333 1319.32817 NaN NaN NaN NaN NaN NaN NaN 31.773 1 35.072 34.572 35.572 3.2991 0 0 0 0.38417 1 5459 5459 0 0 1 2031 329 1228 1231 2651 2651 -0.31872077418506706 CCFCCDCFWC 10 Unmodified _CCFCCDCFWC_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|370|3|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|370|3|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|370|3|anti-sense MSMS UPN47_class_I_Rep_2 3 616.7941284179688 2 616.661654 1231.30876 NaN NaN NaN NaN NaN NaN NaN 56.533 1 59.834 59.334 60.334 3.3009 0 0 0 0.53105 1 12949 12949 0.45834 0.45834 1 2032 13838 1229 1232 2652 2652 -0.2976466564707607 CCFCCDCFWC 10 Unmodified _CCFCCDCFWC_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|370|3|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|370|3|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|370|3|anti-sense MSMS UPN47_class_I_Rep_2 3 616.6629638671875 2 616.661654 1231.30876 NaN NaN NaN NaN NaN NaN NaN 56.757 1 60.058 59.558 60.558 3.3009 0 0 0 0.53105 1 13018 13018 0.45834 0.45834 1 2033 13838 1229 1232 2653 2653 -0.2976466564707607 CCFCFHVLSI 10 Unmodified _CCFCFHVLSI_ 0 0 0 REV__L1MA2_dup183|chr1:93165562-93168116:-|4.880466427427871|0.3063260769364375|3.99|151.0|99|1|anti-sense REV__L1MA2_dup183|chr1:93165562-93168116:-|4.880466427427871|0.3063260769364375|3.99|151.0|99|1|anti-sense MSMS UPN48_class_I_Rep_1 5 586.2589721679688 2 586.258491 1170.50243 NaN NaN NaN NaN NaN NaN NaN 23.277 1 26.838 26.338 27.338 3.5605 0 0 0 0.53105 1 2404 2404 0.40072 0.050084 1 + 2034 24840 1230 1233 2654 2654 -0.07600301552656674 CCFFFFLFFG 10 Unmodified _CCFFFFLFFG_ 0 0 0 REV__L1MA5A_dup382|chr2:61441862-61442898:+|1.1856334173488698|0.0087501122690707|7.08|150.0|67|3|anti-sense REV__L1MA5A_dup382|chr2:61441862-61442898:+|1.1856334173488698|0.0087501122690707|7.08|150.0|67|3|anti-sense MSMS UPN47_class_I_Rep_1 2 639.2781372070312 2 639.279749 1276.54494 NaN NaN NaN NaN NaN NaN NaN 35.019 1 38.705 38.205 39.205 3.6859 0 0 0 0.53105 1 6373 6373 1.8442 0 1 + 2035 25424 1231 1234 2655 2655 -0.08226583152804778 CCGHCCHL 8 Unmodified _CCGHCCHL_ 0 0 0 ENST00000462054.6_2_X:53295593-53296058:-|nuORF ENST00000462054.6_2_X:53295593-53296058:-|nuORF ENST00000462054.6_2_X:53295593-53296058:-|nuORF MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.142603 874.270654 NaN NaN NaN NaN NaN NaN NaN 42.774 1 42.774 42.274 43.274 0 0 0 0 0.40738 1 8495 8495 0.79363 0 1 2036 6864 1232 1235 2656 2656 -0.1715104745520648 CCGMEVFFF 9 Unmodified _CCGMEVFFF_ 0 0 0 REV__AluJo_dup75384|chr20:50907606-50907897:-|1.864608097455175|0.1754424972677456|3.41|151.0|21|3|anti-sense REV__AluJo_dup75384|chr20:50907606-50907897:-|1.864608097455175|0.1754424972677456|3.41|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_2 3 541.7105102539062 2 541.710842 1081.40713 NaN NaN NaN NaN NaN NaN NaN 24.208 1 27.674 27.174 28.174 3.4655 0 0 0 0.4007 1 3174 3174 0.52476 0 1 + 2037 17021 1233 1236 2657 2657 -0.13031654743690524 CCHCCWCY 8 Unmodified _CCHCCWCY_ 0 0 0 L1PA7_dup11528|chr14:71064623-71067912:-|1.5918702927983752|0.1290013889498952|3.63|151.0|176|3|anti-sense L1PA7_dup11528|chr14:71064623-71067912:-|1.5918702927983752|0.1290013889498952|3.63|151.0|176|3|anti-sense L1PA7_dup11528|chr14:71064623-71067912:-|1.5918702927983752|0.1290013889498952|3.63|151.0|176|3|anti-sense MSMS UPN48_class_I_Rep_1 5 510.6341552734375 2 510.636297 1019.25804 NaN NaN NaN NaN NaN NaN NaN 96.647 1 100.26 99.759 100.76 3.6124 0 0 0 0.40738 1 23291 23291 0.79363 0.79363 1 2038 14729 1234 1237 2658 2658 -0.2508182690976355 CCHCHSDCL 9 Unmodified _CCHCHSDCL_ 0 0 0 L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|56|2|anti-sense L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|56|2|anti-sense L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|56|2|anti-sense MSMS UPN46_class_I_Rep_3 1 510.7979736328125 2 510.661357 1019.30816 NaN NaN NaN NaN NaN NaN NaN 44.154 1 44.154 43.654 44.654 0 0 0 0 0.40038 1 8874 8874 0.6015 0.076735 1 2039 11999 1235 1238 2659 2659 -0.20072000980269422 CCHCHSDCLGA 11 Unmodified _CCHCHSDCLGA_ 0 0 0 L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|56|2|anti-sense L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|56|2|anti-sense L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_3 4 574.2623291015625 2 574.690646 1147.36674 NaN NaN NaN NaN NaN NaN NaN 46.237 1 49.481 48.981 49.981 3.244 0 0 0 0.38417 1 9873 9873 0.30703 0.30703 1 2040 11999 1236 1239 2660 2660 -0.20104944405784408 CCHLQNIVFG 10 Unmodified _CCHLQNIVFG_ 0 0 0 REV__HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|21|2|sense REV__HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 567.2666015625 2 567.265161 1132.51577 NaN NaN NaN NaN NaN NaN NaN 34.944 1 38.208 37.708 38.708 3.2639 0 0 0 0.53105 1 6412 6412 1.4819 0.41044 1 + 2041 23646 1237 1240 2661 2661 -0.04518727449067228 CCHYYPGV 8 Unmodified _CCHYYPGV_ 0 0 0 REV__L1MEf_dup7635|chr10:96038057-96039637:-|1.206020938935542|0.0560913474792882|4.43|151.0|100|3|anti-sense REV__L1MEf_dup7635|chr10:96038057-96039637:-|1.206020938935542|0.0560913474792882|4.43|151.0|100|3|anti-sense MSMS UPN47_class_I_Rep_1 2 471.1859436035156 2 471.185849 940.357144 NaN NaN NaN NaN NaN NaN NaN 85.808 1 89.424 88.924 89.924 3.6153 0 0 0 0.40738 1 21428 21428 0.79363 0 1 + 2042 28687 1238 1241 2662 2662 -0.11542021357331578 CCKHFATYL 9 Unmodified _CCKHFATYL_ 0 0 0 REV__L1MA8_dup2826|chr5:21536725-21539370:+|2.170288050096159|0.134286683642456|4.01|151.0|99|1|anti-sense REV__L1MA8_dup2826|chr5:21536725-21539370:+|2.170288050096159|0.134286683642456|4.01|151.0|99|1|anti-sense MSMS UPN48_class_I_Rep_2 6 543.248779296875 2 543.24898 1084.48341 NaN NaN NaN NaN NaN NaN NaN 23.006 1 26.649 26.149 27.149 3.6432 0 0 0 0.39428 1 2436 2436 2.0598 0.73022 1 + 2043 25547 1239 1242 2663 2663 -0.05545514852087763 CCKWRNSY 8 Unmodified _CCKWRNSY_ 0 0 0 REV__MLT2C1_dup77|chr1:111643834-111644178:-|1.7382491702970764|0.0134163916697946|7.02|150.0|6|2|sense REV__MLT2C1_dup77|chr1:111643834-111644178:-|1.7382491702970764|0.0134163916697946|7.02|150.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 530.2286376953125 2 530.228579 1058.44261 NaN NaN NaN NaN NaN NaN NaN 117.01 1 120.45 119.95 120.95 3.4425 0 0 0 0.40625 1 28809 28809 2.3027 0 1 + 2044 31836 1240 1243 2664 2664 -0.084278561716701 CCLFVCHLSL 10 Unmodified _CCLFVCHLSL_ 0 0 0 REV__L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense REV__L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.2656860351562 2 569.266316 1136.51808 0.27581 0.00015701 -0.99549 -0.0005667 -0.71968 -0.00040969 569.2656883417296 46.464 0.50967 49.815 49.609 50.118 3.3515 56 36 2 0 0 0 0.51565 2 9884 9859;9884 10.074 10.074 1 88097 + 2045 24105 1241 1244 2665;2666 2666 -0.04472015035594268 CCLLLPLG 8 Unmodified _CCLLLPLG_ 0 0 0 L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|384|3|anti-sense L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|384|3|anti-sense L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|384|3|anti-sense MSMS UPN46_class_I_Rep_3 1 416.22796630859375 2 416.226985 830.439417 NaN NaN NaN NaN NaN NaN NaN 63.566 1 63.566 63.066 64.066 0 0 0 0 0.40581 1 14277 14277 2.8892 0 1 2046 14949 1242 1245 2667 2667 0.017415007216186495 CCLPITPTL 9 Unmodified _CCLPITPTL_ 0 0 0 REV__THE1B_dup10444|chr7:139977157-139977525:-|4.171338826861429|0.1952554131175946|4.42|151.0|10|3|sense REV__THE1B_dup10444|chr7:139977157-139977525:-|4.171338826861429|0.1952554131175946|4.42|151.0|10|3|sense MSMS UPN47_class_I_Rep_2 3 480.74761962890625 2 480.748282 959.48201 NaN NaN NaN NaN NaN NaN NaN 52.099 1 55.432 54.932 55.932 3.3332 0 0 0 0.29868 1 11597 11597 10.824 0.64053 1 + 2047 32224 1243 1246 2668 2668 0.0006485105916453904 CCLWFVSLL 9 Unmodified _CCLWFVSLL_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|63|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|63|2|anti-sense MSMS UPN48_class_I_Rep_1 5 542.2734985351562 2 542.271924 1082.52929 NaN NaN NaN NaN NaN NaN NaN 74.385 1 77.875 77.375 78.375 3.49 0 0 0 0.19137 1 17576 17576 16.942 3.8998 1 + 2048 24133 1244 1247 2669 2669 -0.008668696698123313 CCLWFVSLL 9 Unmodified _CCLWFVSLL_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|63|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|63|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 541.722900390625 2 542.271924 1082.52929 0.56885 0.00030847 4.1349 0.0022422 4.7037 0.0025507 542.2739220831095 74.424 0.064507 77.974 77.922 77.987 3.5505 11 8 2 0 0 0 0.11598 1 17437 17437 11.64 3.047 1 65905 + 2049 24133 1244 1247 2670 2670 -0.008668696698123313 CCMCSDCF 8 Unmodified _CCMCSDCF_ 0 0 0 Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 456.0808410644531 2 456.114863 910.215173 NaN NaN NaN NaN NaN NaN NaN 56.616 1 56.616 56.116 57.116 0 0 0 0 0.40738 1 12358 12358 0.79363 0 1 2050 33054 1245 1248 2671 2671 -0.24352641757843685 CCMCSDCSNHQ 11 Unmodified _CCMCSDCSNHQ_ 0 0 0 Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|27|2|sense Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|27|2|sense Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 615.76220703125 2 615.676878 1229.3392 NaN NaN NaN NaN NaN NaN NaN 21.551 1 25.265 24.765 25.765 3.7144 0 0 0 0.38417 1 2045 2045 0.30703 0.30703 1 2051 33082 1246 1249 2672 2672 -0.2662921572830328 CCMSFRLK 8 Unmodified _CCMSFRLK_ 0 0 0 MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|17|2|sense MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|17|2|sense MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 494.2353515625 2 494.232276 986.449999 NaN NaN NaN NaN NaN NaN NaN 117.99 1 121.6 121.1 122.1 3.6124 0 0 0 0.40738 1 28061 28061 0.79363 0 1 2052 16151 1247 1250 2673 2673 -0.04376839895599005 CCMVFSIWW 9 Unmodified _CCMVFSIWW_ 0 0 0 REV__L1PA8A_dup1872|chr11:73502119-73505135:+|1.6830460164247447|0.0185257668758611|6.51|151.0|192|3|anti-sense REV__L1PA8A_dup1872|chr11:73502119-73505135:+|1.6830460164247447|0.0185257668758611|6.51|151.0|192|3|anti-sense MSMS UPN46_class_I_Rep_3 1 587.8397827148438 2 587.747759 1173.48096 NaN NaN NaN NaN NaN NaN NaN 13.861 1 13.861 13.361 14.361 0 0 0 0 0.40038 1 488 488 0.6015 0 1 + 2053 30261 1248 1251 2674 2674 -0.09883686581360962 CCPCFEMEF 9 Unmodified _CCPCFEMEF_ 0 0 0 REV__AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense REV__AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.685791015625 2 554.683967 1107.35338 NaN NaN NaN NaN NaN NaN NaN 29.223 1 32.854 32.354 33.354 3.6316 0 0 0 0.4007 1 4122 4122 0.52476 0.52476 1 + 2054 17116 1249 1252 2675 2675 -0.1960019523774008 CCPCFEMEF 9 Unmodified _CCPCFEMEF_ 0 0 0 REV__AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense REV__AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.6854248046875 2 554.683967 1107.35338 NaN NaN NaN NaN NaN NaN NaN 21.467 1 25.181 24.681 25.681 3.7144 0 0 0 0.4007 1 2020 2020 0.52476 0 1 + 2055 17116 1249 1252 2676 2676 -0.1960019523774008 CCPDKCCC 8 Unmodified _CCPDKCCC_ 0 0 0 ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-2|LSR ENSG00000105699|ENST00000605618|LSR ENSG00000105699|ENST00000605618|LSR MSMS UPN48_class_I_Rep_1 5 437.621337890625 2 437.622855 873.231157 NaN NaN NaN NaN NaN NaN NaN 98.704 1 102.31 101.81 102.81 3.6065 0 0 0 0.40746 1 23822 23822 0.69038 0.69038 1 2056 1753 1250 1253 2677 2677 -0.21052935520947358 CCPHVWTTLPG 11 Unmodified _CCPHVWTTLPG_ 0 0 0 REV__ENST00000262622.4_1_19:34175671-34262890:+|nuORF REV__ENST00000262622.4_1_19:34175671-34262890:+|nuORF MSMS UPN47_class_I_Rep_3 4 404.7911071777344 3 405.187938 1212.54198 NaN NaN NaN NaN NaN NaN NaN 88.239 1 91.627 91.127 92.127 3.3873 0 0 0 0.38417 1 22129 22129 1.3296 0.25818 1 + 2057 21571 1251 1254 2678 2678 -0.05578458277614118 CCPPPPPV 8 Unmodified _CCPPPPPV_ 0 0 0 REV__nc|ENSG00000211890|P01877-1|IGHA2 REV__nc|ENSG00000211890|P01877-1|IGHA2 MSMS UPN47_class_I_Rep_1 2 404.7908630371094 2 405.18786 808.361167 NaN NaN NaN NaN NaN NaN NaN 66.874 1 70.235 69.735 70.735 3.3611 0 0 0 0.40738 1 16047 16047 0.79363 0 1 + 2058 32102 1252 1255 2679 2679 -0.050679318636298376 CCPSVSDRCF 10 Unmodified _CCPSVSDRCF_ 0 0 0 REV__AluJb_dup88548|chr13:28187055-28187333:+|1.6945571243574804|0.0170916362156593|6.63|151.0|15|2|anti-sense REV__AluJb_dup88548|chr13:28187055-28187333:+|1.6945571243574804|0.0170916362156593|6.63|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_3 4 558.7175903320312 2 558.717187 1115.41982 NaN NaN NaN NaN NaN NaN NaN 118 1 121.43 120.93 121.93 3.4238 0 0 0 0.53105 1 29091 29091 1.3295 0 1 + 2059 16911 1253 1256 2680 2680 -0.1332724335147759 CCPTFPCF 8 Unmodified _CCPTFPCF_ 0 0 0 ENST00000314471.10_1_19:39847690-39860405:+|nuORF ENST00000314471.10_1_19:39847690-39860405:+|nuORF ENST00000314471.10_1_19:39847690-39860405:+|nuORF MSMS UPN46_class_I_Rep_3 1 459.1718444824219 2 459.171353 916.328152 NaN NaN NaN NaN NaN NaN NaN 19.737 1 19.737 19.237 20.237 0 0 0 0 0.40738 1 1933 1933 0.79363 0 1 2060 6126 1254 1257 2681 2681 -0.13335881977991448 CCSKRKKL 8 Unmodified _CCSKRKKL_ 0 0 0 BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|200|3|anti-sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|200|3|anti-sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|200|3|anti-sense MSMS UPN47_class_I_Rep_1 2 483.2723388671875 2 483.27279 964.531026 NaN NaN NaN NaN NaN NaN NaN 115.99 1 119.58 119.08 120.08 3.5943 0 0 0 0.40738 1 28716 28716 0.79363 0 1 2061 418 1255 1258 2682 2682 0.04734184138783348 CCSPDMESD 9 Unmodified _CCSPDMESD_ 0 0 0 REV__ENST00000587148.2_1_18:52605184-52610022:-|nuORF REV__ENST00000587148.2_1_18:52605184-52610022:-|nuORF MSMS UPN48_class_I_Rep_3 7 493.65032958984375 2 493.648636 985.282718 NaN NaN NaN NaN NaN NaN NaN 104.33 1 108.05 107.55 108.55 3.7192 0 0 0 0.4007 1 24630 24630 0.52476 0.52476 1 + 2062 20179 1256 1259 2683 2683 -0.21051197021688495 CCSSYPPTK 9 Unmodified _CCSSYPPTK_ 0 0 0 nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR nc|ENSG00000168453|O43593-2|HR nc|ENSG00000168453|O43593-2|HR MSMS UPN48_class_I_Rep_1 5 493.2091064453125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 17.748 1 21.274 20.774 21.774 3.5261 0 0 0 0.4007 1 1080 1080 0.52476 0 1 2063 4371 1257 1260 2684 2684 -0.08833786877016792 CCTPGGVVLI 10 Unmodified _CCTPGGVVLI_ 0 0 0 nc|ENSG00000110079|Q96JQ5-2|MS4A4A;ENSG00000110079|ENST00000337908|MS4A4A nc|ENSG00000110079|Q96JQ5-2|MS4A4A nc|ENSG00000110079|Q96JQ5-2|MS4A4A MSMS UPN46_class_I_Rep_3 1 481.2452392578125 2 481.245906 960.477259 NaN NaN NaN NaN NaN NaN NaN 26.905 1 26.905 26.405 27.405 0 0 0 0 0.53105 1 3920 3920 3.5965 0 1 2064 1928 1258 1261 2685 2685 -0.004560330835829518 CCTQRNFFF 9 Unmodified _CCTQRNFFF_ 0 0 0 ENST00000256383.8_1_14:67851663-67851699:+|nuORF ENST00000256383.8_1_14:67851663-67851699:+|nuORF ENST00000256383.8_1_14:67851663-67851699:+|nuORF MSMS UPN48_class_I_Rep_1 5 582.8238525390625 2 583.249511 1164.48447 NaN NaN NaN NaN NaN NaN NaN 36.55 1 40.057 39.557 40.557 3.507 0 0 0 0.39518 1 6114 6114 1.8442 0.19162 1 2065 5928 1259 1262 2686 2686 -0.09119300483166626 CCVARPRR 8 Unmodified _CCVARPRR_ 0 0 0 L1PBa1_dup418|chr15:35357428-35359770:-|1.1296079042649496|0.0195780691613167|5.85|150.0|9|1|sense L1PBa1_dup418|chr15:35357428-35359770:-|1.1296079042649496|0.0195780691613167|5.85|150.0|9|1|sense L1PBa1_dup418|chr15:35357428-35359770:-|1.1296079042649496|0.0195780691613167|5.85|150.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 480.7511291503906 2 480.752556 959.490558 NaN NaN NaN NaN NaN NaN NaN 20.594 1 20.594 20.094 21.094 0 0 0 0 0.40738 1 2170 2170 0.79363 0.10326 1 2066 15402 1260 1263 2687 2687 0.009192625390255671 CCVHCSSTFNF 11 Unmodified _CCVHCSSTFNF_ 0 0 0 Tigger1_dup11498|chr20:5553069-5553967:+|2.501376762236679|0.4841227158384836|2.37|151.0|38|1|anti-sense Tigger1_dup11498|chr20:5553069-5553967:+|2.501376762236679|0.4841227158384836|2.37|151.0|38|1|anti-sense Tigger1_dup11498|chr20:5553069-5553967:+|2.501376762236679|0.4841227158384836|2.37|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_3 4 624.23583984375 2 624.235744 1246.45693 NaN NaN NaN NaN NaN NaN NaN 25.092 1 28.443 27.943 28.943 3.3509 0 0 0 0.38417 1 3472 3472 1.3295 0.72803 1 2067 33018 1261 1264 2688 2688 -0.15643571805708234 CCWIYRRF 8 Unmodified _CCWIYRRF_ 0 0 0 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 MSMS UPN47_class_I_Rep_1 2 573.7716674804688 2 573.770414 1145.52628 NaN NaN NaN NaN NaN NaN NaN 78.177 1 81.606 81.106 82.106 3.4289 0 0 0 0.40404 1 19428 19428 5.2307 1.6342 1 2068 594 1262 1265 2689 2689 -0.0406670000397753 CCWIYRRF 8 Unmodified _CCWIYRRF_ 0 0 0 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 MULTI-MSMS UPN47_class_I_Rep_2 3 573.7706909179688 2 573.770414 1145.52628 0.48331 0.00027731 1.1412 0.00065481 1.6246 0.00093212 573.7709784044912 78.102 0.39056 81.445 81.283 81.674 3.3428 64 42 2 0 0 0 0.82752 4 19371 19371;19402;19423;19436 5.2307 2.9279 1 96495 2069 594 1262 1265 2690;2691;2692;2693 2690 -0.0406670000397753 CCWIYRRF 8 Unmodified _CCWIYRRF_ 0 0 0 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 chr17:4434166-4439658|149|147.99|0.56|8.05|+|0|SPNS3,SPNS3|3 MULTI-MSMS UPN47_class_I_Rep_3 4 573.7724609375 2 573.770414 1145.52628 0.46597 0.00026736 1.2077 0.00069293 1.6737 0.00096029 573.7710919736633 78.14 0.40093 81.421 81.227 81.628 3.2816 72 43 2 0 0 0 0.82752 2 19446 19446;19519 5.2307 2.2354 1 111250 2070 594 1262 1265 2694;2695 2694 -0.0406670000397753 CCWLLQVL 8 Unmodified _CCWLLQVL_ 0 0 0 ENST00000307940.3_1_1:150549879-150549927:-|nuORF ENST00000307940.3_1_1:150549879-150549927:-|nuORF ENST00000307940.3_1_1:150549879-150549927:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 489.2510070800781 2 489.250991 976.48743 0.28316 0.00013854 -1.0363 -0.00050703 -0.75318 -0.00036849 489.25040224710784 82.79 0.22269 82.79 82.738 82.961 0 23 18 2 0 0 0 0.82752 1 19636 19636 24.674 5.2349 1 104680 2071 6100 1263 1266 2696 2696 -0.0017542535836128081 CCWLLQVL 8 Unmodified _CCWLLQVL_ 0 0 0 ENST00000307940.3_1_1:150549879-150549927:-|nuORF ENST00000307940.3_1_1:150549879-150549927:-|nuORF ENST00000307940.3_1_1:150549879-150549927:-|nuORF MSMS UPN46_class_I_Rep_3 1 489.25054931640625 2 489.250991 976.48743 NaN NaN NaN NaN NaN NaN NaN 82.682 1 82.682 82.182 83.182 0 0 0 0 0.33946 1 19600 19600 24.674 4.2203 1 2072 6100 1263 1266 2697 2697 -0.0017542535836128081 CCWLLQVL 8 Unmodified _CCWLLQVL_ 0 0 0 ENST00000307940.3_1_1:150549879-150549927:-|nuORF ENST00000307940.3_1_1:150549879-150549927:-|nuORF ENST00000307940.3_1_1:150549879-150549927:-|nuORF MSMS UPN46_class_I_Rep_3 1 489.25079345703125 2 489.250991 976.48743 NaN NaN NaN NaN NaN NaN NaN 82.98 1 82.98 82.48 83.48 0 0 0 0 0.36705 1 19683 19683 18.135 3.2967 1 2073 6100 1263 1266 2698 2698 -0.0017542535836128081 CCWPYYKY 8 Unmodified _CCWPYYKY_ 0 0 0 L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|87|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|87|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|87|2|anti-sense MSMS UPN47_class_I_Rep_2 3 563.2306518554688 2 563.230256 1124.44596 NaN NaN NaN NaN NaN NaN NaN 38.736 1 42.115 41.615 42.615 3.3785 0 0 0 0.40746 1 7532 7532 0.69038 0 1 2074 11713 1264 1267 2699 2699 -0.11128606117677009 CCWSMYDDSE 10 Unmodified _CCWSMYDDSE_ 0 0 0 REV__L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|293|3|anti-sense REV__L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|293|3|anti-sense MSMS UPN48_class_I_Rep_1 5 619.6911010742188 2 619.693574 1237.3726 NaN NaN NaN NaN NaN NaN NaN 28.403 1 31.96 31.46 32.46 3.5571 0 0 0 0.53105 1 3795 3795 0.40072 0.40072 1 + 2075 30193 1265 1268 2700 2700 -0.23659567413119476 CCYCYSNLGID 11 Unmodified _CCYCYSNLGID_ 0 0 0 REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|121|1|anti-sense REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|121|1|anti-sense MSMS UPN47_class_I_Rep_2 3 627.2337646484375 2 627.235409 1252.45627 NaN NaN NaN NaN NaN NaN NaN 114.7 1 118.2 117.7 118.7 3.5039 0 0 0 0.38417 1 27936 27936 1.1933 0.66858 1 + 2076 29214 1266 1269 2701 2701 -0.1598641124542155 CCYELCCCEH 10 Unmodified _CCYELCCCEH_ 0 0 0 L1MB8_dup2517|chr3:11455966-11456533:-|2.590151715641644|0.0267045716211801|6.6|151.0|29|1|anti-sense L1MB8_dup2517|chr3:11455966-11456533:-|2.590151715641644|0.0267045716211801|6.6|151.0|29|1|anti-sense L1MB8_dup2517|chr3:11455966-11456533:-|2.590151715641644|0.0267045716211801|6.6|151.0|29|1|anti-sense MSMS UPN47_class_I_Rep_1 2 603.1790161132812 2 603.181265 1204.34798 NaN NaN NaN NaN NaN NaN NaN 119.14 1 122.74 122.24 123.24 3.6036 0 0 0 0.53105 1 29592 29592 0.40072 0.40072 1 2077 10980 1267 1270 2702 2702 -0.24602242091850712 CCYEYYGLY 9 Unmodified _CCYEYYGLY_ 0 0 0 REV__L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|95|1|anti-sense REV__L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_2 3 588.7234497070312 2 588.722461 1175.43037 NaN NaN NaN NaN NaN NaN NaN 72.107 1 75.397 74.897 75.897 3.2899 0 0 0 0.39326 1 17658 17658 2.3027 0.24298 1 + 2078 25203 1268 1271 2703 2703 -0.1503293742537153 CCYSDYHCD 9 Unmodified _CCYSDYHCD_ 0 0 0 REV__LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|35|3|anti-sense REV__LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|35|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.6605834960938 2 554.662077 1107.3096 NaN NaN NaN NaN NaN NaN NaN 99.192 1 103.08 102.58 103.58 3.8839 0 0 0 0.4007 1 23497 23497 0.52476 0.52476 1 + 2079 30914 1269 1272 2704 2704 -0.23976088410495322 CCYYYYDD 8 Unmodified _CCYYYYDD_ 0 0 0 REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1757202148438 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 21.701 1 25.254 24.754 25.754 3.5533 0 0 0 0.40738 1 2020 2020 0.79363 0.19213 1 + 2080 28469 1270 1273 2705 2705 -0.21278076247540412 CCYYYYDD 8 Unmodified _CCYYYYDD_ 0 0 0 REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1759643554688 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 113.11 1 116.78 116.28 117.28 3.6648 0 0 0 0.40746 1 26980 26980 0.69038 0 1 + 2081 28469 1270 1273 2706 2706 -0.21278076247540412 CDDSDMCD 8 Unmodified _CDDSDMCD_ 0 0 0 REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense MSMS UPN46_class_I_Rep_3 1 452.113037109375 2 452.111886 902.209219 NaN NaN NaN NaN NaN NaN NaN 75.991 1 75.991 75.491 76.491 0 0 0 0 0.40798 1 17702 17702 0 0 1 + 2082 24933 1271 1274 2707 2707 -0.24579745464154712 CDDSDMCD 8 Unmodified _CDDSDMCD_ 0 0 0 REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_1 2 451.790283203125 2 452.111886 902.209219 NaN NaN NaN NaN NaN NaN NaN 111.95 1 115.52 115.02 116.02 3.572 0 0 0 0.40798 1 27620 27620 0 0 1 + 2083 24933 1271 1274 2708 2708 -0.24579745464154712 CDDSDMCD 8 Unmodified _CDDSDMCD_ 0 0 0 REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_3 4 452.26910400390625 2 452.111886 902.209219 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.52 117.02 118.02 3.4963 0 0 0 0.40798 1 27987 27987 0 0 1 + 2084 24933 1271 1274 2709 2709 -0.24579745464154712 CDEETPFL 8 Unmodified _CDEETPFL_ 0 0 0 REV__ENST00000484513.1_1_3:38180924-38181542:+|nuORF REV__ENST00000484513.1_1_3:38180924-38181542:+|nuORF MSMS UPN48_class_I_Rep_2 6 477.1983947753906 2 477.199676 952.384799 NaN NaN NaN NaN NaN NaN NaN 119.2 1 122.86 122.36 123.36 3.6652 0 0 0 0.40604 1 28603 28603 2.5775 0.27475 1 + 2085 22593 1272 1275 2710 2710 -0.09329839616111713 CDEGQDQG 8 Unmodified _CDEGQDQG_ 0 0 0 L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|223|1|anti-sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|223|1|anti-sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|223|1|anti-sense MSMS UPN48_class_I_Rep_2 6 426.1374206542969 2 426.145432 850.276311 NaN NaN NaN NaN NaN NaN NaN 54.573 1 58.155 57.655 58.655 3.5817 0 0 0 0.40746 1 11548 11548 0.69038 0.16561 1 2086 13707 1273 1276 2711 2711 -0.1548163086653176 CDEGQDQG 8 Unmodified _CDEGQDQG_ 0 0 0 L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|223|1|anti-sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|223|1|anti-sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|223|1|anti-sense MSMS UPN48_class_I_Rep_3 7 426.13720703125 2 426.145432 850.276311 NaN NaN NaN NaN NaN NaN NaN 54.882 1 58.452 57.952 58.952 3.5694 0 0 0 0.40625 1 11582 11582 2.3027 1.5091 1 2087 13707 1273 1276 2712 2712 -0.1548163086653176 CDEHTGSC 8 Unmodified _CDEHTGSC_ 0 0 0 L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|50|1|anti-sense L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|50|1|anti-sense L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|50|1|anti-sense MSMS UPN46_class_I_Rep_3 1 426.1372985839844 2 426.136553 850.258552 NaN NaN NaN NaN NaN NaN NaN 74.306 1 74.306 73.806 74.806 0 0 0 0 0.40746 1 17238 17238 0.69038 0 1 2088 14037 1274 1277 2713 2713 -0.17256669393043467 CDEHTGSC 8 Unmodified _CDEHTGSC_ 0 0 0 L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|50|1|anti-sense L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|50|1|anti-sense L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|50|1|anti-sense MSMS UPN47_class_I_Rep_1 2 426.13720703125 2 426.136553 850.258552 NaN NaN NaN NaN NaN NaN NaN 91.848 1 95.554 95.054 96.054 3.7053 0 0 0 0.40746 1 22905 22905 0.69038 0 1 2089 14037 1274 1277 2714 2714 -0.17256669393043467 CDEMESMHKS 10 Unmodified _CDEMESMHKS_ 0 0 0 Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|30|3|sense Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|30|3|sense Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|30|3|sense MSMS UPN47_class_I_Rep_2 3 598.72314453125 2 598.722666 1195.43078 NaN NaN NaN NaN NaN NaN NaN 116.75 1 120.24 119.74 120.74 3.4891 0 0 0 0.53105 1 28514 28514 3.2813 2.4877 1 2090 460 1275 1278 2715 2715 -0.15911885767832246 CDFRRCVQF 9 Unmodified _CDFRRCVQF_ 0 0 0 HERVL-int_dup1340|chrX:47985710-47986591:+|1.2503119037881556|0.2428375157229435|2.36|151.0|14|1|sense HERVL-int_dup1340|chrX:47985710-47986591:+|1.2503119037881556|0.2428375157229435|2.36|151.0|14|1|sense HERVL-int_dup1340|chrX:47985710-47986591:+|1.2503119037881556|0.2428375157229435|2.36|151.0|14|1|sense MSMS UPN47_class_I_Rep_1 2 587.26806640625 2 587.268235 1172.52192 NaN NaN NaN NaN NaN NaN NaN 62.182 1 65.55 65.05 66.05 3.3681 0 0 0 0.39518 1 14632 14632 1.8442 0 1 2091 8345 1276 1279 2716 2716 -0.05744209217550633 CDFTYSYTF 9 Unmodified _CDFTYSYTF_ 0 0 0 L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|206|3|anti-sense L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|206|3|anti-sense L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|206|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.7265014648438 2 573.726058 1145.43756 0.56219 0.00032254 -0.35794 -0.00020536 0.20425 0.00011718 573.7258912338006 60.196 0.59852 63.67 63.382 63.98 3.4737 79 43 3 0 0 0 0.36392 1 13245 13245 10.074 0.6908 1 174730 2092 9379 1277 1280 2717 2717 -0.12933881553317406 CDIIDIPQL 9 Unmodified _CDIIDIPQL_ 0 0 0 ENSG00000142619|ENST00000375460|PADI3 ENSG00000142619|ENST00000375460|PADI3 ENSG00000142619|ENST00000375460|PADI3 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2689208984375 2 515.267893 1028.52123 0.38564 0.00019871 1.5178 0.00078208 1.9034 0.00098079 515.2685991692604 74.586 0.48325 78.136 78.011 78.494 3.5505 127 50 3 0 0 0 0.23293 1 17453 17453 18.146 0 1 834150 2093 3255 1278 1281 2718 2718 0.00811274614420654 CDILVRLPLLS 11 Unmodified _CDILVRLPLLS_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|193|1|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|193|1|anti-sense MSMS UPN48_class_I_Rep_3 7 621.3677368164062 2 621.367941 1240.72133 NaN NaN NaN NaN NaN NaN NaN 30.139 1 33.853 33.353 34.353 3.7146 0 0 0 0.38417 1 4310 4310 0.30703 0.30703 1 + 2094 25728 1279 1282 2719 2719 0.11059749282003395 CDMISRCG 8 Unmodified _CDMISRCG_ 0 0 0 L1MB2_dup5622|chr11:43465609-43466352:+|5.1122280257392925|0.1718691593995255|4.89|150.0|28|1|anti-sense L1MB2_dup5622|chr11:43465609-43466352:+|5.1122280257392925|0.1718691593995255|4.89|150.0|28|1|anti-sense L1MB2_dup5622|chr11:43465609-43466352:+|5.1122280257392925|0.1718691593995255|4.89|150.0|28|1|anti-sense MSMS UPN48_class_I_Rep_3 7 442.6738586425781 2 442.674791 883.335028 NaN NaN NaN NaN NaN NaN NaN 98.349 1 102.25 101.75 102.75 3.9022 0 0 0 0.40472 1 23308 23308 4.3292 1.7518 1 2095 10260 1280 1283 2720 2720 -0.1113056909741772 CDMSFPWYR 9 Unmodified _CDMSFPWYR_ 0 0 0 REV__ENST00000520925.1_1_8:23179624-23191135:-|nuORF REV__ENST00000520925.1_1_8:23179624-23191135:-|nuORF MSMS UPN47_class_I_Rep_3 4 602.74755859375 2 602.749344 1203.48414 NaN NaN NaN NaN NaN NaN NaN 36.658 1 39.905 39.405 40.405 3.247 0 0 0 0.39518 1 6937 6937 1.8442 1.1539 1 + 2096 19080 1281 1284 2721 2721 -0.10946720203014593 CDPLDGWMKH 10 Unmodified _CDPLDGWMKH_ 0 0 0 L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|23|3|sense L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|23|3|sense L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|23|3|sense MSMS UPN48_class_I_Rep_2 6 601.2595825195312 2 601.260076 1200.5056 NaN NaN NaN NaN NaN NaN NaN 24.568 1 28.205 27.705 28.705 3.637 0 0 0 0.53105 1 2873 2873 1.6526 0 1 2097 9401 1282 1285 2722 2722 -0.08663335174310305 CDQDCDELVT 10 Unmodified _CDQDCDELVT_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MSMS UPN47_class_I_Rep_1 2 570.7127075195312 2 570.712821 1139.41109 NaN NaN NaN NaN NaN NaN NaN 51.317 1 54.91 54.41 55.41 3.5932 0 0 0 0.53105 1 11329 11329 6.2058 1.4498 1 2098 16731 1283 1286 2723 2723 -0.15303938506963277 CDRFMFQLS 9 Unmodified _CDRFMFQLS_ 0 0 0 REV__MER11C_dup818|chr17:64510852-64511930:-|1.4871538461050369|0.2191923787355724|2.76|151.0|42|1|anti-sense REV__MER11C_dup818|chr17:64510852-64511930:-|1.4871538461050369|0.2191923787355724|2.76|151.0|42|1|anti-sense MSMS UPN48_class_I_Rep_2 6 573.7592163085938 2 573.757169 1145.49979 NaN NaN NaN NaN NaN NaN NaN 67.005 1 70.501 70.001 71.001 3.4964 0 0 0 0.25702 1 15352 15352 13.042 2.9685 1 + 2099 31097 1284 1287 2724 2724 -0.06714433685942822 CDSYWDKRLA 10 Unmodified _CDSYWDKRLA_ 0 0 0 REV__nc|ENSG00000198625|O15151-5|MDM4 REV__nc|ENSG00000198625|O15151-5|MDM4 MSMS UPN48_class_I_Rep_3 7 628.7891235351562 2 628.790055 1255.56556 NaN NaN NaN NaN NaN NaN NaN 21.725 1 25.44 24.94 25.94 3.7144 0 0 0 0.53105 1 2093 2093 1.6526 0 1 + 2100 21134 1285 1288 2725 2725 -0.052003212394083675 CDWEEISVK 9 Unmodified _CDWEEISVK_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MSMS UPN48_class_I_Rep_3 7 554.6857299804688 2 554.752607 1107.49066 NaN NaN NaN NaN NaN NaN NaN 65.687 1 69.195 68.695 69.695 3.5077 0 0 0 0.39598 1 14863 14863 1.6526 0.17072 1 2101 2265 1286 1289 2726 2726 -0.05878503770645693 CDWQQTYVG 9 Unmodified _CDWQQTYVG_ 0 0 0 REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|259|2|anti-sense REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|259|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178344726562 2 550.229299 1098.44404 NaN NaN NaN NaN NaN NaN NaN 25.018 1 28.654 28.154 29.154 3.6363 0 0 0 0.39518 1 2987 2987 1.8442 0.36234 1 + 2102 24772 1287 1290 2727 2727 -0.10123943601956853 CECDCGQKQM 10 Unmodified _CECDCGQKQM_ 0 0 0 REV__nc|ENSG00000054148|Q9NRX4-2|PHPT1 REV__nc|ENSG00000054148|Q9NRX4-2|PHPT1 MSMS UPN47_class_I_Rep_2 3 572.6979370117188 2 572.698137 1143.38172 NaN NaN NaN NaN NaN NaN NaN 42.141 1 45.502 45.002 46.002 3.3611 0 0 0 0.53105 1 8563 8563 0.40072 0.40072 1 + 2103 17687 1288 1291 2728 2728 -0.18423497328444682 CECDCGQKQM 10 Unmodified _CECDCGQKQM_ 0 0 0 REV__nc|ENSG00000054148|Q9NRX4-2|PHPT1 REV__nc|ENSG00000054148|Q9NRX4-2|PHPT1 MSMS UPN48_class_I_Rep_3 7 572.9727172851562 2 572.698137 1143.38172 NaN NaN NaN NaN NaN NaN NaN 30.108 1 33.822 33.322 34.322 3.7146 0 0 0 0.53105 1 4302 4302 0.40072 0.40072 1 + 2104 17687 1288 1291 2729 2729 -0.18423497328444682 CECLIFWF 8 Unmodified _CECLIFWF_ 0 0 0 L1M1_dup8928|chr18:57712078-57713145:+|2.1125396027482277|0.1379233022710392|3.94|151.0|53|2|anti-sense L1M1_dup8928|chr18:57712078-57713145:+|2.1125396027482277|0.1379233022710392|3.94|151.0|53|2|anti-sense L1M1_dup8928|chr18:57712078-57713145:+|2.1125396027482277|0.1379233022710392|3.94|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7357177734375 2 530.735174 1059.4558 NaN NaN NaN NaN NaN NaN NaN 20.133 1 23.484 22.984 23.984 3.3514 0 0 0 0.40738 1 2019 2019 0.79363 0 1 2105 8644 1289 1292 2730 2730 -0.07155418112279222 CEDEYLVN 8 Unmodified _CEDEYLVN_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-SECPEP UPN46_class_I_Rep_3 1 492.26922607421875 2 492.702583 983.390612 0.25379 0.00012504 2.2691 0.001118 2.5229 0.001243 492.70365025333433 69.701 0.15125 69.701 69.646 69.798 0 18 16 2 0 0 0 0.72333 1 15998 15998 0.69038 0 1 48904 2106 3874 1290 1293 2731 2731 -0.10174741104435725 CEECYWYFDKD 11 Unmodified _CEECYWYFDKD_ 0 0 0 L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|80|1|anti-sense L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|80|1|anti-sense L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7652282714844 3 500.853061 1499.53735 NaN NaN NaN NaN NaN NaN NaN 25.612 1 29.179 28.679 29.679 3.5667 0 0 0 0.38417 1 3011 3011 0.094841 0.094841 1 2107 9655 1291 1294 2732 2732 -0.19243432001690053 CEFCCCCMKC 10 Unmodified _CEFCCCCMKC_ 0 0 0 L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|39|2|anti-sense L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|39|2|anti-sense L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_1 2 586.6624755859375 2 586.66334 1171.31213 NaN NaN NaN NaN NaN NaN NaN 33.71 1 37.408 36.908 37.908 3.6983 0 0 0 0.53105 1 5971 5971 0.40072 0.40072 1 2108 10847 1292 1295 2733 2733 -0.2666773886471674 CEFPDELILS 10 Unmodified _CEFPDELILS_ 0 0 0 REV__ENST00000525473.1_1_11:71518673-71529252:-|nuORF REV__ENST00000525473.1_1_11:71518673-71529252:-|nuORF MSMS UPN47_class_I_Rep_3 4 583.275634765625 2 583.275915 1164.53728 NaN NaN NaN NaN NaN NaN NaN 37.256 1 40.503 40.003 41.003 3.247 0 0 0 0.53105 1 7123 7123 1.6526 0 1 + 2109 21060 1293 1296 2734 2734 -0.03841063939353262 CEHVLIQKF 9 Unmodified _CEHVLIQKF_ 0 0 0 REV__L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|20|3|sense REV__L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|20|3|sense MSMS UPN48_class_I_Rep_1 5 558.7819213867188 2 558.797152 1115.57975 NaN NaN NaN NaN NaN NaN NaN 68.072 1 71.524 71.024 72.024 3.4517 0 0 0 0.38639 1 15695 15695 3.9444 0 1 + 2110 25841 1294 1297 2735 2735 0.026583759795585138 CEICNWDFD 9 Unmodified _CEICNWDFD_ 0 0 0 REV__L1ME3Cz_dup7910|chr10:100160954-100161752:+|1.2236730495223025|0.0789685729519396|3.95|150.0|54|3|anti-sense REV__L1ME3Cz_dup7910|chr10:100160954-100161752:+|1.2236730495223025|0.0789685729519396|3.95|150.0|54|3|anti-sense MSMS UPN47_class_I_Rep_2 3 572.6959228515625 2 572.707342 1143.40013 NaN NaN NaN NaN NaN NaN NaN 114.85 1 118.35 117.85 118.85 3.5039 0 0 0 0.39518 1 27980 27980 1.8442 0 1 + 2111 28130 1295 1298 2736 2736 -0.16583296090584554 CELDCSRFEY 10 Unmodified _CELDCSRFEY_ 0 0 0 REV__L1M1_dup945|chr2:97498899-97500000:+|2.139280697602223|0.4738816047615796|2.17|151.0|61|2|anti-sense REV__L1M1_dup945|chr2:97498899-97500000:+|2.139280697602223|0.4738816047615796|2.17|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 632.7526245117188 2 632.752281 1263.49001 NaN NaN NaN NaN NaN NaN NaN 19.819 1 23.468 22.968 23.968 3.6497 0 0 0 0.53105 1 1584 1584 1.6526 0 1 + 2112 24175 1296 1299 2737 2737 -0.131196664819754 CELVMALDYL 10 Unmodified _CELVMALDYL_ 0 0 0 nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;ENSG00000169302|ENST00000397936|STK32A;nc|ENSG00000169302|Q8WU08-2|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A MSMS UPN48_class_I_Rep_3 7 585.2843627929688 2 585.282686 1168.55082 NaN NaN NaN NaN NaN NaN NaN 30.175 1 33.889 33.389 34.389 3.7146 0 0 0 0.53105 1 4318 4318 3.5965 1.5367 1 2113 4416 1297 1300 2738 2738 -0.02671529431745512 CEMYALRRLY 10 Unmodified _CEMYALRRLY_ 0 0 0 L1PB1_dup696|chr1:213197741-213198586:-|1.018673371019155|0.0116415871552006|6.45|150.0|58|3|anti-sense L1PB1_dup696|chr1:213197741-213198586:-|1.018673371019155|0.0116415871552006|6.45|150.0|58|3|anti-sense L1PB1_dup696|chr1:213197741-213198586:-|1.018673371019155|0.0116415871552006|6.45|150.0|58|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 439.8861083984375 3 439.886259 1316.63695 -0.42389 -0.00018646 -0.14236 -6.2623E-05 -0.56625 -0.00024908 439.8861778204022 25.508 1.5525 29.257 28.896 30.448 3.7495 403 142 4 0 0 0 0.56072 1 3671 3671 3.3196 3.3196 1 1442000 2114 15186 1298 1301 2739 2739 -0.008705248063733961 CEPDCFDESD 10 Unmodified _CEPDCFDESD_ 0 0 0 REV__MER21A_dup1413|chr12:123173301-123174184:+|1.2133865828732575|0.0283576937879052|5.42|151.0|39|2|anti-sense REV__MER21A_dup1413|chr12:123173301-123174184:+|1.2133865828732575|0.0283576937879052|5.42|151.0|39|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 580.1806030273438 2 580.181354 1158.34816 0.46134 0.00026766 -1.1278 -0.00065434 -0.66648 -0.00038668 580.180473217129 75.876 0.18546 79.133 79.091 79.277 3.2573 22 16 3 0 0 0 0.56486 1 18851 18851 0.40072 0.050084 1 154160 + 2115 31180 1299 1302 2740 2740 -0.22468504294988634 CEPDCFDESD 10 Unmodified _CEPDCFDESD_ 0 0 0 REV__MER21A_dup1413|chr12:123173301-123174184:+|1.2133865828732575|0.0283576937879052|5.42|151.0|39|2|anti-sense REV__MER21A_dup1413|chr12:123173301-123174184:+|1.2133865828732575|0.0283576937879052|5.42|151.0|39|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 580.181354 1158.34816 0.46297 0.0002686 -1.0805 -0.0006269 -0.61756 -0.0003583 580.1806732899652 75.95 0.13191 79.271 79.187 79.319 3.3216 0.068949 2.7045E-05 NaN 0.40072 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 78137 + 2116 31180 1299 1302 -0.22468504294988634 CEPKGKFFY 9 Unmodified _CEPKGKFFY_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-SECPEP UPN47_class_I_Rep_1 2 559.7507934570312 2 559.770603 1117.52665 0.37391 0.0002093 1.3976 0.00078235 1.7715 0.00099165 559.7721087195819 71.143 0.072624 74.518 74.484 74.557 3.3751 9 6 2 0 0 0 0.12235 1 17321 17321 4.756 1.8668 1 22903 2117 1915 1300 1303 2741 2741 -0.02741001803110521 CEPKGKFFY 9 Unmodified _CEPKGKFFY_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-MATCH UPN47_class_I_Rep_3 4 2 559.770603 1117.52665 0.44794 0.00025075 0.10654 5.9637E-05 0.55448 0.00031038 560.271277668959 71.427 0.10422 74.646 74.583 74.687 3.2188 0.064145 -0.00061822 NaN 4.756 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 30331 2118 1915 1300 1303 -0.02741001803110521 CEPNKPQIKA 10 Unmodified _CEPNKPQIKA_ 0 0 0 REV__ENSG00000187833|ENST00000409561|C2orf78 REV__ENSG00000187833|ENST00000409561|C2orf78 MSMS UPN48_class_I_Rep_3 7 564.2967529296875 2 564.297516 1126.58048 NaN NaN NaN NaN NaN NaN NaN 23.276 1 27.027 26.527 27.527 3.7507 0 0 0 0.53105 1 2522 2522 1.4819 0.79152 1 + 2119 20945 1301 1304 2742 2742 0.022251706285715045 CESHWQSDQF 10 Unmodified _CESHWQSDQF_ 0 0 0 REV__ENSG00000112214|ENST00000450218|FHL5 REV__ENSG00000112214|ENST00000450218|FHL5 MSMS UPN47_class_I_Rep_3 4 633.7462158203125 2 633.745844 1265.47714 NaN NaN NaN NaN NaN NaN NaN 44.126 1 47.37 46.87 47.87 3.2441 0 0 0 0.53105 1 9223 9223 1.6526 0 1 + 2120 18477 1302 1305 2743 2743 -0.14498361549908623 CEVGCCCFMCE 11 Unmodified _CEVGCCCFMCE_ 0 0 0 REV__L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|195|1|anti-sense REV__L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|195|1|anti-sense MSMS UPN48_class_I_Rep_1 5 613.6778564453125 2 613.677501 1225.34045 NaN NaN NaN NaN NaN NaN NaN 36.588 1 40.095 39.595 40.595 3.507 0 0 0 0.38417 1 6126 6126 0 0 1 + 2121 27592 1303 1306 2744 2744 -0.2632071768375681 CEVGCCCFMCE 11 Unmodified _CEVGCCCFMCE_ 0 0 0 REV__L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|195|1|anti-sense REV__L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|195|1|anti-sense MSMS UPN48_class_I_Rep_1 5 613.6777954101562 2 613.677501 1225.34045 NaN NaN NaN NaN NaN NaN NaN 43.515 1 47.025 46.525 47.525 3.5103 0 0 0 0.38417 1 8177 8177 0 0 1 + 2122 27592 1303 1306 2745 2745 -0.2632071768375681 CEWCCGCA 8 Unmodified _CEWCCGCA_ 0 0 0 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 MULTI-MSMS UPN46_class_I_Rep_3 1 437.6215515136719 2 437.62117 873.227786 0.15304 6.6974E-05 0.84007 0.00036763 0.99311 0.00043461 437.6214370580275 95.712 0.28279 95.712 95.548 95.831 0 34 29 2 0 0 0 0.82752 1 23232 23232 0 0 1 379820 + 2123 18361 1304 1307 2746 2746 -0.2138986230329465 CEWCCGCA 8 Unmodified _CEWCCGCA_ 0 0 0 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 MULTI-MSMS UPN47_class_I_Rep_1 2 437.6214904785156 2 437.62117 873.227786 0.13461 5.8906E-05 0.42577 0.00018633 0.56038 0.00024523 437.6214787661362 91.209 0.047867 94.915 94.879 94.927 3.7053 8 6 2 0 0 0 0.82752 1 22774 22774 0 0 1 72170 + 2124 18361 1304 1307 2747 2747 -0.2138986230329465 CEWCCGCA 8 Unmodified _CEWCCGCA_ 0 0 0 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 437.62117 873.227786 0.13902 6.0837E-05 0.061537 2.693E-05 0.20055 8.7766E-05 437.6211404116133 91.942 0.057098 95.647 95.617 95.674 3.7053 -0.032102 -0.0006143 NaN 0 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 115080 + 2125 18361 1304 1307 -0.2138986230329465 CEYGEPCHGAD 11 Unmodified _CEYGEPCHGAD_ 0 0 0 REV__ENSG00000007314|ENST00000435607|SCN4A REV__ENSG00000007314|ENST00000435607|SCN4A MSMS UPN46_class_I_Rep_3 1 590.7069702148438 2 590.705331 1179.39611 NaN NaN NaN NaN NaN NaN NaN 115.1 1 115.1 114.6 115.6 0 0 0 0 0.38417 1 28465 28465 1.1933 0.39971 1 + 2126 17546 1305 1308 2748 2748 -0.18641385584282943 CFAFITHFDV 10 Unmodified _CFAFITHFDV_ 0 0 0 REV__MER119_dup509|chr6:150980908-150981462:-|1.8797172444107109|0.0228585248609842|6.36|151.0|22|1|anti-sense REV__MER119_dup509|chr6:150980908-150981462:-|1.8797172444107109|0.0228585248609842|6.36|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 600.281982421875 2 600.281334 1198.54812 NaN NaN NaN NaN NaN NaN NaN 80.849 1 84.219 83.719 84.719 3.3694 0 0 0 0.53105 1 20129 20129 3.9444 0 1 + 2127 31081 1306 1309 2749 2749 -0.04321616774427639 CFANHCFDCC 10 Unmodified _CFANHCFDCC_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS UPN46_class_I_Rep_3 1 581.6834106445312 2 581.68229 1161.35003 NaN NaN NaN NaN NaN NaN NaN 70.93 1 70.93 70.43 71.43 0 0 0 0 0.53105 1 16322 16322 0.40072 0 1 + 2128 17949 1307 1310 2750 2750 -0.2241944529173452 CFCCHCCCMF 10 Unmodified _CFCCHCCCMF_ 0 0 0 L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|145|3|anti-sense L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|145|3|anti-sense L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|145|3|anti-sense MSMS UPN47_class_I_Rep_3 4 599.8004150390625 2 600.158224 1198.3019 NaN NaN NaN NaN NaN NaN NaN 99.887 1 103.33 102.83 103.83 3.4483 0 0 0 0.53105 1 24687 24687 0 0 1 2129 10677 1308 1311 2751 2751 -0.2893230179931834 CFCFPVDSQL 10 Unmodified _CFCFPVDSQL_ 0 0 0 L1M6B_dup279|chr7:140829619-140830306:-|1.6265422339161784|0.0402845151062504|5.34|151.0|26|1|anti-sense L1M6B_dup279|chr7:140829619-140830306:-|1.6265422339161784|0.0402845151062504|5.34|151.0|26|1|anti-sense L1M6B_dup279|chr7:140829619-140830306:-|1.6265422339161784|0.0402845151062504|5.34|151.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.7514038085938 2 579.751553 1157.48855 0.5451 0.00031602 -0.86795 -0.0005032 -0.32286 -0.00018718 579.7511154673292 68.225 0.31454 71.734 71.569 71.883 3.5094 48 29 2 0 0 0 0.55448 1 15640 15640 4.897 0.56777 1 95396 2130 9227 1309 1312 2752 2752 -0.08389255780093663 CFCSCHCNCDF 11 Unmodified _CFCSCHCNCDF_ 0 0 0 ENST00000472558.6_1_12:6657995-6658223:-|nuORF ENST00000472558.6_1_12:6657995-6658223:-|nuORF ENST00000472558.6_1_12:6657995-6658223:-|nuORF MSMS UPN47_class_I_Rep_1 2 641.1842651367188 2 641.184339 1280.35413 NaN NaN NaN NaN NaN NaN NaN 119.38 1 122.99 122.49 123.49 3.6036 0 0 0 0.38417 1 29663 29663 0 0 1 2131 6934 1310 1313 2753 2753 -0.27483723860336795 CFCWAWIS 8 Unmodified _CFCWAWIS_ 0 0 0 REV__L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|78|2|anti-sense REV__L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|78|2|anti-sense MSMS UPN48_class_I_Rep_2 6 508.21221923828125 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 36.637 1 40.339 39.839 40.839 3.7021 0 0 0 0.40625 1 6178 6178 2.3027 0 1 + 2132 27126 1311 1314 2754 2754 -0.09744857943599072 CFCWHLEI 8 Unmodified _CFCWHLEI_ 0 0 0 REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|62|1|anti-sense REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 525.730224609375 2 525.730423 1049.44629 NaN NaN NaN NaN NaN NaN NaN 22.295 1 25.719 25.219 26.219 3.4241 0 0 0 0.40738 1 2621 2621 0.79363 0 1 + 2133 27865 1312 1315 2755 2755 -0.07645186397826365 CFDRTAPFT 9 Unmodified _CFDRTAPFT_ 0 0 0 L1M2a_dup256|chr10:21787454-21789728:+|1.552565852808412|0.0196376641798874|6.3|150.0|50|3|sense L1M2a_dup256|chr10:21787454-21789728:+|1.552565852808412|0.0196376641798874|6.3|150.0|50|3|sense L1M2a_dup256|chr10:21787454-21789728:+|1.552565852808412|0.0196376641798874|6.3|150.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2423706054688 2 529.242209 1056.46987 0.41018 0.00021709 0.16281 8.6165E-05 0.57299 0.00030325 529.242158916769 77.899 0.69724 81.521 81.218 81.916 3.6222 123 71 2 0 0 0 0.46869 1 18484 18484 3.9444 0.3479 1 331320 2134 8730 1313 1316 2756 2756 -0.056110493596634115 CFEEMRHAKK 10 Unmodified _CFEEMRHAKK_ 0 0 0 REV__L1M4_dup9978|chr9:92444211-92444662:-|1.0084737206068737|0.0029574982846027|8.41|151.0|14|3|sense REV__L1M4_dup9978|chr9:92444211-92444662:-|1.0084737206068737|0.0029574982846027|8.41|151.0|14|3|sense MSMS UPN48_class_I_Rep_2 6 639.8057250976562 2 639.807725 1277.6009 NaN NaN NaN NaN NaN NaN NaN 24.613 1 28.249 27.749 28.749 3.6363 0 0 0 0.53105 1 2883 2883 1.6526 0.32309 1 + 2135 24472 1314 1317 2757 2757 -0.026799819832831417 CFEGFFVSL 9 Unmodified _CFEGFFVSL_ 0 0 0 L1PA4_dup733|chr1:213213892-213220019:+|3.796483139130908|0.1322423303040193|4.84|151.0|220|1|anti-sense L1PA4_dup733|chr1:213213892-213220019:+|3.796483139130908|0.1322423303040193|4.84|151.0|220|1|anti-sense L1PA4_dup733|chr1:213213892-213220019:+|3.796483139130908|0.1322423303040193|4.84|151.0|220|1|anti-sense MSMS UPN46_class_I_Rep_3 1 524.7438354492188 2 524.744053 1047.47355 NaN NaN NaN NaN NaN NaN NaN 30.39 1 30.39 29.89 30.89 0 0 0 0 0.39518 1 4942 4942 1.8442 1.0506 1 2136 14387 1315 1318 2758 2758 -0.04828379585796938 CFEGVRLQDEL 11 Unmodified _CFEGVRLQDEL_ 0 0 0 REV__nc|ENSG00000130985|P22314-2|UBA1 REV__nc|ENSG00000130985|P22314-2|UBA1 MSMS UPN48_class_I_Rep_3 7 436.8792724609375 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 112.89 1 116.55 116.05 117.05 3.6568 0 0 0 0.38417 1 26832 26832 0.45452 0.29519 1 + 2137 18961 1316 1319 2759 2759 -0.02351782896471377 CFFDFFFNF 9 Unmodified _CFFDFFFNF_ 0 0 0 L1MC3_dup8099|chr10:42607863-42609137:+|1.290225449559906|0.1805649163677801|2.84|151.0|57|1|anti-sense L1MC3_dup8099|chr10:42607863-42609137:+|1.290225449559906|0.1805649163677801|2.84|151.0|57|1|anti-sense L1MC3_dup8099|chr10:42607863-42609137:+|1.290225449559906|0.1805649163677801|2.84|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 617.2557983398438 2 617.257328 1232.5001 0.45299 0.00027961 -1.602 -0.00098884 -1.149 -0.00070923 617.2563811943006 79.128 0.35301 82.574 82.423 82.776 3.4456 39 26 2 0 0 0 0.46869 1 19679 19679 3.9444 0 1 175320 2138 11378 1317 1320 2760 2760 -0.10684690694461096 CFFKLLRLA 9 Unmodified _CFFKLLRLA_ 0 0 0 L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|91|3|anti-sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|91|3|anti-sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|91|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.829345703125 2 555.828255 1109.64196 NaN NaN NaN NaN NaN NaN NaN 39.572 1 42.81 42.31 43.31 3.238 0 0 0 0.4007 1 7833 7833 0.52476 0 1 2139 13206 1318 1321 2761 2761 0.09152147118538778 CFFLVNLYQ 9 Unmodified _CFFLVNLYQ_ 0 0 0 L1PA8_dup496|chr1:235699850-235700455:+|1.224909133231948|0.0241195459150565|5.67|150.0|27|2|anti-sense L1PA8_dup496|chr1:235699850-235700455:+|1.224909133231948|0.0241195459150565|5.67|150.0|27|2|anti-sense L1PA8_dup496|chr1:235699850-235700455:+|1.224909133231948|0.0241195459150565|5.67|150.0|27|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7886352539062 2 573.786253 1145.55795 NaN NaN NaN NaN NaN NaN NaN 93.51 1 97.246 96.746 97.746 3.736 0 0 0 0.28335 1 23259 23259 11.64 3.7301 1 2140 14950 1319 1322 2762 2762 -0.009004287690459023 CFGGVWPCF 9 Unmodified _CFGGVWPCF_ 0 0 0 REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|45|1|anti-sense REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|45|1|anti-sense MSMS UPN46_class_I_Rep_3 1 508.21185302734375 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 28.715 1 28.715 28.215 29.215 0 0 0 0 0.381 1 4448 4448 5.2307 2.3415 1 + 2141 27249 1320 1323 2763 2763 -0.09744857943587704 CFHCHAEA 8 Unmodified _CFHCHAEA_ 0 0 0 L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|140|3|anti-sense L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|140|3|anti-sense L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|140|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.17156982421875 2 459.173272 916.331992 NaN NaN NaN NaN NaN NaN NaN 105.11 1 105.11 104.61 105.61 0 0 0 0 0.40738 1 25642 25642 0.79363 0 1 2142 9573 1321 1324 2764 2764 -0.129520761599224 CFHFATLIKI 10 Unmodified _CFHFATLIKI_ 0 0 0 REV__L1MB4_dup7969|chr18:13467020-13468270:+|4.037314283542957|0.0360938893192143|6.81|151.0|20|2|sense REV__L1MB4_dup7969|chr18:13467020-13468270:+|4.037314283542957|0.0360938893192143|6.81|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 596.8328857421875 2 596.830995 1191.64744 NaN NaN NaN NaN NaN NaN NaN 50.704 1 54.325 53.825 54.825 3.621 0 0 0 0.53105 1 10315 10315 6.2058 0.97511 1 + 2143 26024 1322 1325 2765 2765 0.05927825910339379 CFHFHLFH 8 Unmodified _CFHFHLFH_ 0 0 0 L1M4_dup10888|chrX:56754199-56754939:+|2.729427096940767|0.0243591864787971|6.81|151.0|44|3|anti-sense L1M4_dup10888|chrX:56754199-56754939:+|2.729427096940767|0.0243591864787971|6.81|151.0|44|3|anti-sense L1M4_dup10888|chrX:56754199-56754939:+|2.729427096940767|0.0243591864787971|6.81|151.0|44|3|anti-sense MSMS UPN47_class_I_Rep_3 4 544.2489624023438 2 544.250172 1086.48579 NaN NaN NaN NaN NaN NaN NaN 42.958 1 46.197 45.697 46.697 3.2394 0 0 0 0.40738 1 8867 8867 0.79363 0 1 2144 8824 1323 1326 2766 2766 -0.05399298332076796 CFHKPALYFH 10 Unmodified _CFHKPALYFH_ 0 0 0 REV__L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|48|2|anti-sense REV__L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_1 5 631.8133544921875 2 631.810593 1261.60663 NaN NaN NaN NaN NaN NaN NaN 44.75 1 48.263 47.763 48.763 3.5132 0 0 0 0.53105 1 8554 8554 1.6526 0.32309 1 + 2145 25988 1324 1327 2767 2767 -0.01370515409280415 CFHLICKIL 9 Unmodified _CFHLICKIL_ 0 0 0 REV__L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|46|3|anti-sense REV__L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|46|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.3006591796875 2 545.301016 1088.58748 0.48799 0.0002661 -0.84638 -0.00046153 -0.35839 -0.00019543 545.3003653387166 68.955 0.36932 72.476 72.277 72.647 3.5216 33 22 2 0 0 0 0.36392 1 15957 15957 10.074 0.72649 1 91665 + 2146 27186 1325 1328 2768 2768 0.0467281197545617 CFHQCCYSCY 10 Unmodified _CFHQCCYSCY_ 0 0 0 REV__THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|60|1|anti-sense REV__THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 628.7039794921875 2 628.703222 1255.39189 NaN NaN NaN NaN NaN NaN NaN 114.4 1 117.98 117.48 118.48 3.5809 0 0 0 0.53105 1 28268 28268 0.40072 0.050084 1 + 2147 32258 1326 1329 2769 2769 -0.22558889603192256 CFHRCCNCC 9 Unmodified _CFHRCCNCC_ 0 0 0 REV__L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|69|3|anti-sense REV__L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|69|3|anti-sense MSMS UPN47_class_I_Rep_1 2 544.6743774414062 2 544.671202 1087.32785 NaN NaN NaN NaN NaN NaN NaN 119.45 1 123.06 122.56 123.56 3.6036 0 0 0 0.4007 1 29684 29684 0.52476 0.52476 1 + 2148 30260 1327 1330 2770 2770 -0.21231948241143073 CFHTTKMELS 10 Unmodified _CFHTTKMELS_ 0 0 0 MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|3|1|sense MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|3|1|sense MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 598.777099609375 2 598.775559 1195.53657 NaN NaN NaN NaN NaN NaN NaN 23.06 1 26.504 26.004 27.004 3.4447 0 0 0 0.53105 1 2842 2842 1.6526 0.17072 1 2149 16139 1328 1331 2771 2771 -0.053381818600655606 CFHWWFACC 9 Unmodified _CFHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN46_class_I_Rep_3 1 601.7217407226562 2 601.722075 1201.4296 NaN NaN NaN NaN NaN NaN NaN 100.91 1 100.91 100.41 101.41 0 0 0 0 0.40038 1 24614 24614 0.6015 0 1 + 2150 31649 1329 1332 2772 2772 -0.1630601055542229 CFIKGNTQTRE 11 Unmodified _CFIKGNTQTRE_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|101|2|sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|101|2|sense MSMS UPN47_class_I_Rep_2 3 432.8851623535156 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 98.457 1 101.95 101.45 102.45 3.4897 0 0 0 0.38417 1 24143 24143 1.2148 0 1 + 2151 28947 1330 1333 2773 2773 -0.006769608023432738 CFIKGNTQTRE 11 Unmodified _CFIKGNTQTRE_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|101|2|sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|101|2|sense MSMS UPN47_class_I_Rep_2 3 432.8852844238281 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 110.14 1 113.67 113.17 114.17 3.5271 0 0 0 0.38417 1 26826 26826 1.2148 0.51716 1 + 2152 28947 1330 1333 2774 2774 -0.006769608023432738 CFIKGNTQTRE 11 Unmodified _CFIKGNTQTRE_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|101|2|sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|101|2|sense MSMS UPN47_class_I_Rep_3 4 432.8851318359375 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 97.877 1 101.3 100.8 101.8 3.4216 0 0 0 0.38417 1 24248 24248 0.40827 0 1 + 2153 28947 1330 1333 2775 2775 -0.006769608023432738 CFILLCPFK 9 Unmodified _CFILLCPFK_ 0 0 0 REV__L1MEc_dup6858|chr6:37947919-37948486:-|1.3316650932505545|0.0037613474227518|8.47|150.0|46|3|anti-sense REV__L1MEc_dup6858|chr6:37947919-37948486:-|1.3316650932505545|0.0037613474227518|8.47|150.0|46|3|anti-sense MSMS UPN48_class_I_Rep_3 7 542.2910766601562 2 542.290117 1082.56568 NaN NaN NaN NaN NaN NaN NaN 62.175 1 65.686 65.186 66.186 3.5104 0 0 0 0.39428 1 13799 13799 2.0598 0.21551 1 + 2154 28474 1331 1334 2776 2776 0.02770007226877169 CFLFFCFLY 9 Unmodified _CFLFFCFLY_ 0 0 0 L1MEd_dup17367|chr13:109514519-109516090:-|1.1027674500542837|0.0066623718737968|7.37|133.0|112|2|anti-sense L1MEd_dup17367|chr13:109514519-109516090:-|1.1027674500542837|0.0066623718737968|7.37|133.0|112|2|anti-sense L1MEd_dup17367|chr13:109514519-109516090:-|1.1027674500542837|0.0066623718737968|7.37|133.0|112|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 601.7869262695312 2 601.774299 1201.53405 0.51649 0.00031081 1.5772 0.00094914 2.0937 0.0012599 601.7749515146936 53.41 0.63127 56.736 56.459 57.091 3.3266 66 41 2 0 0 0 0.48414 1 12066 12066 2.3027 0 1 117060 2155 13184 1332 1335 2777 2777 -0.05865985527043449 CFLFMWPWL 9 Unmodified _CFLFMWPWL_ 0 0 0 REV__L1ME3F_dup193|chr1:96746096-96746503:-|1.4980056451643669|0.0078509000597401|7.58|151.0|33|3|anti-sense REV__L1ME3F_dup193|chr1:96746096-96746503:-|1.4980056451643669|0.0078509000597401|7.58|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_1 2 621.7969970703125 2 621.795566 1241.57658 NaN NaN NaN NaN NaN NaN NaN 72.147 1 75.526 75.026 76.026 3.3799 0 0 0 0.40038 1 17635 17635 0.6015 0 1 + 2156 28171 1333 1336 2778 2778 -0.03454590398837354 CFLMIRYHD 9 Unmodified _CFLMIRYHD_ 0 0 0 REV__L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|225|2|anti-sense REV__L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|225|2|anti-sense MSMS UPN48_class_I_Rep_2 6 599.2810668945312 2 599.280812 1196.54707 NaN NaN NaN NaN NaN NaN NaN 28.766 1 32.397 31.897 32.897 3.6311 0 0 0 0.40038 1 3999 3999 0.6015 0.076735 1 + 2157 24892 1334 1337 2779 2779 -0.043341544149825495 CFLVSWYGQ 9 Unmodified _CFLVSWYGQ_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|139|1|anti-sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|139|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.7537231445312 2 551.754953 1101.49535 NaN NaN NaN NaN NaN NaN NaN 31.508 1 31.508 31.008 32.008 0 0 0 0 0.39428 1 5273 5273 2.0598 0 1 + 2158 30578 1335 1338 2780 2780 -0.05133574837236665 CFMCTLTLG 9 Unmodified _CFMCTLTLG_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|82|1|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|82|1|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_1 2 494.71820068359375 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 28.692 1 32.459 31.959 32.959 3.7662 0 0 0 0.39428 1 4455 4455 2.0598 0 1 2159 11432 1336 1339 2781 2781 -0.07143368226638813 CFMHIEALL 9 Unmodified _CFMHIEALL_ 0 0 0 L1MEc_dup1712|chr1:244427885-244428486:+|1.0707507691956266|0.2199012238285775|2.28|149.0|37|1|anti-sense L1MEc_dup1712|chr1:244427885-244428486:+|1.0707507691956266|0.2199012238285775|2.28|149.0|37|1|anti-sense L1MEc_dup1712|chr1:244427885-244428486:+|1.0707507691956266|0.2199012238285775|2.28|149.0|37|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.7664184570312 2 538.767006 1075.51946 0.4043 0.00021782 -1.4429 -0.00077737 -1.0386 -0.00055954 538.7660999956071 76.135 0.31252 79.539 79.42 79.732 3.4034 35 29 2 0 0 0 0.46869 1 18824 18824 3.9444 0.66309 1 57829 2160 13054 1337 1340 2782 2782 -0.015280576751820263 CFNEPMMEEI 10 Unmodified _CFNEPMMEEI_ 0 0 0 REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA MULTI-MSMS UPN48_class_I_Rep_2 6 621.7456665039062 2 621.74561 1241.47667 0.58879 0.00036608 -0.70406 -0.00043775 -0.11527 -7.1668E-05 621.7452894107454 58.116 0.45536 61.616 61.375 61.831 3.4995 47 26 3 0 0 0 0.55724 1 12601 12601 4.5289 0.58447 1 124010 + 2161 18505 1338 1341 2783 2783 -0.1344124058559828 CFNTFVVWL 9 Unmodified _CFNTFVVWL_ 0 0 0 REV__ENSG00000006607|ENST00000264042|FARP2 REV__ENSG00000006607|ENST00000264042|FARP2 MSMS UPN47_class_I_Rep_3 4 564.76953125 2 564.78097 1127.54739 NaN NaN NaN NaN NaN NaN NaN 50.683 1 53.9 53.4 54.4 3.2163 0 0 0 0.38639 1 11218 11218 3.9444 0.94915 1 + 2162 17538 1339 1342 2784 2784 -0.011284114234740628 CFPAFCLIW 9 Unmodified _CFPAFCLIW_ 0 0 0 L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2584838867188 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 30.172 1 30.172 29.672 30.672 0 0 0 0 0.39326 1 4876 4876 2.3027 0 1 2163 11376 1340 1343 2785 2785 -0.04223138841302898 CFPAFCLIW 9 Unmodified _CFPAFCLIW_ 0 0 0 L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2599487304688 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 32.312 1 32.312 31.812 32.812 0 0 0 0 0.39326 1 5511 5511 2.3027 0 1 2164 11376 1340 1343 2786 2786 -0.04223138841302898 CFPFTWWI 8 Unmodified _CFPFTWWI_ 0 0 0 L1PA5_dup8739|chr12:46539931-46546054:-|1.2260831228194753|0.0462972169374036|4.73|151.0|278|2|anti-sense L1PA5_dup8739|chr12:46539931-46546054:-|1.2260831228194753|0.0462972169374036|4.73|151.0|278|2|anti-sense L1PA5_dup8739|chr12:46539931-46546054:-|1.2260831228194753|0.0462972169374036|4.73|151.0|278|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2594604492188 2 550.257131 1098.49971 NaN NaN NaN NaN NaN NaN NaN 115.88 1 115.88 115.38 116.38 0 0 0 0 0.40604 1 28669 28669 2.5775 0.27475 1 2165 14524 1341 1344 2787 2787 -0.04560065623650189 CFQVHVEY 8 Unmodified _CFQVHVEY_ 0 0 0 REV__L1PB4_dup580|chr2:62053847-62054870:+|1.297011848125412|0.0139100734430293|6.54|151.0|42|1|anti-sense REV__L1PB4_dup580|chr2:62053847-62054870:+|1.297011848125412|0.0139100734430293|6.54|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.2354125976562 2 512.731477 1023.4484 0.14166 7.2634E-05 2.8347 0.0014535 2.9764 0.0015261 513.2348612235072 50.726 0.37607 54.065 53.94 54.316 3.3386 30 20 2 0 0 0 0.82752 1 11226 11226 12.532 0.89125 1 66830 + 2166 30607 1342 1345 2788 2788 -0.06238434388365022 CFQVHVEY 8 Unmodified _CFQVHVEY_ 0 0 0 REV__L1PB4_dup580|chr2:62053847-62054870:+|1.297011848125412|0.0139100734430293|6.54|151.0|42|1|anti-sense REV__L1PB4_dup580|chr2:62053847-62054870:+|1.297011848125412|0.0139100734430293|6.54|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_3 4 512.7316284179688 2 512.731477 1023.4484 NaN NaN NaN NaN NaN NaN NaN 50.814 1 54.03 53.53 54.53 3.2163 0 0 0 0.388 1 11258 11258 12.532 0.89125 1 + 2167 30607 1342 1345 2789 2789 -0.06238434388365022 CFQVHVEY 8 Unmodified _CFQVHVEY_ 0 0 0 REV__L1PB4_dup580|chr2:62053847-62054870:+|1.297011848125412|0.0139100734430293|6.54|151.0|42|1|anti-sense REV__L1PB4_dup580|chr2:62053847-62054870:+|1.297011848125412|0.0139100734430293|6.54|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_3 4 512.732666015625 2 512.731477 1023.4484 NaN NaN NaN NaN NaN NaN NaN 50.971 1 54.187 53.687 54.687 3.2163 0 0 0 0.36705 1 11304 11304 18.135 1.1927 1 + 2168 30607 1342 1345 2790 2790 -0.06238434388365022 CFRYMLLY 8 Unmodified _CFRYMLLY_ 0 0 0 L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_1 2 554.7667236328125 2 554.769548 1107.52454 NaN NaN NaN NaN NaN NaN NaN 27.704 1 31.47 30.97 31.97 3.7662 0 0 0 0.40404 1 4162 4162 5.2307 0.47466 1 2169 12993 1343 1346 2791 2791 -0.024917538125691863 CFRYMLLY 8 Unmodified _CFRYMLLY_ 0 0 0 L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.7674560546875 2 554.769548 1107.52454 NaN NaN NaN NaN NaN NaN NaN 27.886 1 31.22 30.72 31.72 3.3337 0 0 0 0.40404 1 4298 4298 5.2307 0.47466 1 2170 12993 1343 1346 2792 2792 -0.024917538125691863 CFSFFVWLI 9 Unmodified _CFSFFVWLI_ 0 0 0 L1MB4_dup7468|chr16:68206254-68206699:-|2.1861830994406533|0.0241288405288561|6.5|151.0|30|2|anti-sense L1MB4_dup7468|chr16:68206254-68206699:-|2.1861830994406533|0.0241288405288561|6.5|151.0|30|2|anti-sense L1MB4_dup7468|chr16:68206254-68206699:-|2.1861830994406533|0.0241288405288561|6.5|151.0|30|2|anti-sense MSMS UPN48_class_I_Rep_3 7 581.2928466796875 2 581.293714 1160.57287 NaN NaN NaN NaN NaN NaN NaN 86.618 1 90.408 89.908 90.908 3.7905 0 0 0 0.38639 1 20558 20558 3.9444 0 1 2171 10578 1344 1347 2793 2793 -0.0009893690103126573 CFSRCMVTGPL 11 Unmodified _CFSRCMVTGPL_ 0 0 0 REV__L1M4_dup7099|chr6:156974904-156975538:-|1.5656322815644357|0.019763411191508|6.31|151.0|41|3|anti-sense REV__L1M4_dup7099|chr6:156974904-156975538:-|1.5656322815644357|0.019763411191508|6.31|151.0|41|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 405.2408142089844 3 405.189062 1212.54536 -0.11015 -4.4633E-05 1.7268 0.00069967 1.6166 0.00065503 405.5242143598185 76.18 0.11923 79.68 79.642 79.761 3.4996 18 13 2 0 0 0 22.551 1 18093 18093 0.45452 0 1 60155 + 2172 24443 1345 1348 2794 2794 -0.05241531495221352 CFTVVLNN 8 Unmodified _CFTVVLNN_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|1|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|5|intron;VPS13D|p.Q3021Pfs*39|1|0.05|ENSG00000048707|chr1:12346640-12346641|-/C|frameshift_variant;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|6|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|4|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|2|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|3|intron;ENST00000487188.1_1_1:12371595-12395946:+|nuORF;ENST00000460333.5_1_1:12359354-12409038:+|nuORF nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS UPN48_class_I_Rep_1 5 455.2369689941406 2 455.228571 908.442588 NaN NaN NaN NaN NaN NaN NaN 96.481 1 100.09 99.593 100.59 3.6124 0 0 0 0.4044 1 23244 23244 4.756 0 1 2173 897 1346 1349 2795 2795 -0.015295329000423408 CFVCYFKWY 9 Unmodified _CFVCYFKWY_ 0 0 0 L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|183|3|anti-sense L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|183|3|anti-sense L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|183|3|anti-sense MSMS UPN48_class_I_Rep_1 5 629.7756958007812 2 629.774831 1257.53511 NaN NaN NaN NaN NaN NaN NaN 26.071 1 29.638 29.138 30.138 3.5667 0 0 0 0.39428 1 3140 3140 2.0598 0 1 2174 12254 1347 1350 2796 2796 -0.08335771158158423 CFVLLGFEVVC 11 Unmodified _CFVLLGFEVVC_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|367|2|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|367|2|anti-sense MSMS UPN48_class_I_Rep_2 6 614.8074951171875 2 614.80887 1227.60319 NaN NaN NaN NaN NaN NaN NaN 33.199 1 36.849 36.349 37.349 3.6497 0 0 0 0.38417 1 5214 5214 2.9952 0 1 + 2175 24087 1348 1351 2797 2797 -0.0015094629816303495 CFVVVLCAFL 10 Unmodified _CFVVVLCAFL_ 0 0 0 ENSG00000281106|ENST00000629372|TMEM272 ENSG00000281106|ENST00000629372|TMEM272 ENSG00000281106|ENST00000629372|TMEM272 MULTI-MSMS UPN47_class_I_Rep_1 2 557.79638671875 2 557.295399 1112.57624 0.38014 0.00021185 -1.2473 -0.00069511 -0.86715 -0.00048326 557.2946260822349 64.843 0.53192 68.198 67.904 68.436 3.3557 79 44 2 0 0 0 0.55873 1 15365 15365 4.3292 0.38484 1 98788 2176 5847 1349 1352 2798 2798 0.024459898813120162 CFVYMPHSCF 10 Unmodified _CFVYMPHSCF_ 0 0 0 L1M4c_dup655|chr3:128754003-128755594:+|9.264740588306854|0.0416564957790087|7.8|151.0|108|3|anti-sense L1M4c_dup655|chr3:128754003-128755594:+|9.264740588306854|0.0416564957790087|7.8|151.0|108|3|anti-sense L1M4c_dup655|chr3:128754003-128755594:+|9.264740588306854|0.0416564957790087|7.8|151.0|108|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 617.24755859375 2 617.248123 1232.48169 0.010912 6.7356E-06 -0.73835 -0.00045574 -0.72744 -0.00044901 617.2476730495421 39.028 0.49234 42.693 42.522 43.014 3.6652 35 30 2 0 0 0 0.56309 1 7624 7624 1.6526 0.17072 1 50772 2177 9077 1350 1353 2799 2799 -0.12524891932321225 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS UPN48_class_I_Rep_1 5 436.8799743652344 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 117.16 1 120.79 120.29 121.29 3.6254 0 0 0 0.40177 1 28549 28549 0.26902 0.1097 1 2178 6163 1351 1354 2800 2800 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS UPN48_class_I_Rep_1 5 436.87939453125 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 118.49 1 122.11 121.61 122.61 3.6189 0 0 0 0.40177 1 28902 28902 0.26902 0.1097 1 2179 6163 1351 1354 2801 2801 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS UPN48_class_I_Rep_2 6 436.8779296875 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 21.97 1 25.616 25.116 26.116 3.6459 0 0 0 0.40177 1 2167 2167 0.26902 0.033176 1 2180 6163 1351 1354 2802 2802 -0.021346576300402376 CFWFIFLTY 9 Unmodified _CFWFIFLTY_ 0 0 0 REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 620.298828125 2 620.298996 1238.58344 0.54742 0.00033957 -1.2775 -0.00079245 -0.73011 -0.00045289 620.2982768321567 58.353 0.1584 61.84 61.734 61.893 3.487 9 8 2 0 0 0 0.46434 1 12727 12727 4.3292 0 1 161250 + 2181 21977 1352 1355 2803 2803 -0.02630954246615147 CFWFIFLTY 9 Unmodified _CFWFIFLTY_ 0 0 0 REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF MSMS UPN48_class_I_Rep_2 6 620.2979125976562 2 620.298996 1238.58344 NaN NaN NaN NaN NaN NaN NaN 57.895 1 61.409 60.909 61.909 3.5142 0 0 0 0.38478 1 12561 12561 4.3292 0 1 + 2182 21977 1352 1355 2804 2804 -0.02630954246615147 CFWFIFLTY 9 Unmodified _CFWFIFLTY_ 0 0 0 REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 620.2986450195312 2 620.298996 1238.58344 0.51998 0.00032254 -1.1983 -0.00074332 -0.67835 -0.00042078 620.2981671685518 57.904 0.29077 61.436 61.282 61.573 3.5317 28 17 3 0 0 0 0.40174 1 12505 12505 7.9102 1.187 1 602940 + 2183 21977 1352 1355 2805 2805 -0.02630954246615147 CFWFIFLTY 9 Unmodified _CFWFIFLTY_ 0 0 0 REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF MSMS UPN48_class_I_Rep_3 7 620.298828125 2 620.298996 1238.58344 NaN NaN NaN NaN NaN NaN NaN 58.055 1 61.587 61.087 62.087 3.5317 0 0 0 0.38478 1 12546 12546 4.3292 0 1 + 2184 21977 1352 1355 2806 2806 -0.02630954246615147 CFWFIFLTY 9 Unmodified _CFWFIFLTY_ 0 0 0 REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 620.298996 1238.58344 0.53798 0.00033371 -0.38547 -0.00023911 0.15251 9.4602E-05 620.2990710410362 57.891 0.053013 61.385 61.355 61.408 3.4942 -0.025253 0.00085462 NaN 7.9102 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 67048 + 2185 21977 1352 1355 -0.02630954246615147 CFWIWPFY 8 Unmodified _CFWIWPFY_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|198|3|anti-sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|198|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2664794921875 2 581.264956 1160.51536 0.086471 5.0262E-05 1.1778 0.00068461 1.2643 0.00073487 581.2657714393324 44.884 0.47555 48.583 48.44 48.915 3.6999 40 31 2 0 0 0 0.82752 2 9351 9351;9422 6.3541 1.1234 1 65934 + 2186 29134 1353 1356 2807;2808 2807 -0.058477791066252394 CFWIWPFY 8 Unmodified _CFWIWPFY_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|198|3|anti-sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|198|3|anti-sense MSMS UPN47_class_I_Rep_2 3 581.2655639648438 2 581.264956 1160.51536 NaN NaN NaN NaN NaN NaN NaN 45.357 1 48.711 48.211 49.211 3.3534 0 0 0 0.39167 1 9550 9550 11.114 1.0405 1 + 2187 29134 1353 1356 2809 2809 -0.058477791066252394 CFWIWPFY 8 Unmodified _CFWIWPFY_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|198|3|anti-sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|198|3|anti-sense MSMS UPN47_class_I_Rep_3 4 581.2657470703125 2 581.264956 1160.51536 NaN NaN NaN NaN NaN NaN NaN 45.626 1 48.87 48.37 49.37 3.2441 0 0 0 0.4032 1 9685 9685 6.3541 0.14832 1 + 2188 29134 1353 1356 2810 2810 -0.058477791066252394 CFWVFFKI 8 Unmodified _CFWVFFKI_ 0 0 0 L1MCa_dup3078|chr7:45059766-45061445:-|4.945543081050961|0.186225197556633|4.73|151.0|106|3|anti-sense L1MCa_dup3078|chr7:45059766-45061445:-|4.945543081050961|0.186225197556633|4.73|151.0|106|3|anti-sense L1MCa_dup3078|chr7:45059766-45061445:-|4.945543081050961|0.186225197556633|4.73|151.0|106|3|anti-sense MSMS UPN47_class_I_Rep_2 3 545.2825927734375 2 545.283149 1088.55174 NaN NaN NaN NaN NaN NaN NaN 32.113 1 35.582 35.082 36.082 3.4691 0 0 0 0.40738 1 5522 5522 0.79363 0 1 2189 11793 1354 1357 2811 2811 0.011010977900923535 CFYIYCDSW 9 Unmodified _CFYIYCDSW_ 0 0 0 L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|31|3|anti-sense L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|31|3|anti-sense L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|31|3|anti-sense MSMS UPN47_class_I_Rep_3 4 600.230712890625 2 600.230453 1198.44635 NaN NaN NaN NaN NaN NaN NaN 68.837 1 72.034 71.534 72.534 3.1977 0 0 0 0.40038 1 16750 16750 0.6015 0 1 2190 13173 1355 1358 2812 2812 -0.14493231188498612 CGERHHRNR 9 Unmodified _CGERHHRNR_ 0 0 0 L1M3f_dup247|chr5:94013707-94016236:+|1.8159069453416647|0.0241729070105233|6.23|151.0|125|1|anti-sense L1M3f_dup247|chr5:94013707-94016236:+|1.8159069453416647|0.0241729070105233|6.23|151.0|125|1|anti-sense L1M3f_dup247|chr5:94013707-94016236:+|1.8159069453416647|0.0241729070105233|6.23|151.0|125|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.7813110351562 2 582.781222 1163.54789 NaN NaN NaN NaN NaN NaN NaN 26.542 1 29.89 29.39 30.39 3.3478 0 0 0 0.39518 1 3898 3898 1.8442 0 1 2191 8799 1356 1359 2813 2813 -0.027341789310412423 CGFCHCRF 8 Unmodified _CGFCHCRF_ 0 0 0 REV__L1PA5_dup5570|chr8:47548770-47554878:-|4.781325429483643|0.0655231694759179|6.19|151.0|318|3|anti-sense REV__L1PA5_dup5570|chr8:47548770-47554878:-|4.781325429483643|0.0655231694759179|6.19|151.0|318|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 486.686279296875 2 486.685493 971.356433 0.20888 0.00010166 -0.10883 -5.2968E-05 0.10005 4.8691E-05 486.6852252348491 54.418 0.60253 54.418 54.181 54.784 0 129 67 4 0 0 0 0.82752 2 11745 11745;11815 2.5775 0 1 546380 + 2192 29785 1357 1360 2814;2815 2814 -0.13039139278032508 CGHEYCCEDCC 11 Unmodified _CGHEYCCEDCC_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|32|1|anti-sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_2 3 632.6642456054688 2 632.663437 1263.31232 NaN NaN NaN NaN NaN NaN NaN 50.759 1 54.097 53.597 54.597 3.3386 0 0 0 0.38417 1 11185 11185 0 0 1 + 2193 25953 1358 1361 2816 2816 -0.30880324339500476 CGHEYCCEDCC 11 Unmodified _CGHEYCCEDCC_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|32|1|anti-sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_3 4 632.6654663085938 2 632.663437 1263.31232 NaN NaN NaN NaN NaN NaN NaN 50.78 1 53.997 53.497 54.497 3.2163 0 0 0 0.38417 1 11248 11248 0 0 1 + 2194 25953 1358 1361 2817 2817 -0.30880324339500476 CGHSHECC 8 Unmodified _CGHSHECC_ 0 0 0 REV__L1PB4_dup2932|chr7:8035228-8038110:+|1.6947298308557943|0.0413179801005504|5.36|151.0|27|2|sense REV__L1PB4_dup2932|chr7:8035228-8038110:+|1.6947298308557943|0.0413179801005504|5.36|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 438.1335754394531 2 438.13329 874.252027 NaN NaN NaN NaN NaN NaN NaN 49.368 1 49.368 48.868 49.868 0 0 0 0 0.40604 1 10359 10359 2.5775 0 1 + 2195 30583 1359 1362 2818 2818 -0.1901288582540701 CGIFFHVF 8 Unmodified _CGIFFHVF_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|211|2|anti-sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|211|2|anti-sense MSMS UPN47_class_I_Rep_1 2 484.90020751953125 2 485.236199 968.457844 NaN NaN NaN NaN NaN NaN NaN 35.976 1 39.653 39.153 40.153 3.6762 0 0 0 0.40581 1 6661 6661 2.8892 0.31174 1 + 2196 24953 1360 1363 2819 2819 -0.027646213121784058 CGILVQTLGK 10 Unmodified _CGILVQTLGK_ 0 0 0 L1MC3_dup778|chr1:246196769-246197888:+|1.109321092667561|0.0140276737845883|6.31|149.0|29|2|sense L1MC3_dup778|chr1:246196769-246197888:+|1.109321092667561|0.0140276737845883|6.31|149.0|29|2|sense L1MC3_dup778|chr1:246196769-246197888:+|1.109321092667561|0.0140276737845883|6.31|149.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 516.2999267578125 2 516.299527 1030.5845 NaN NaN NaN NaN NaN NaN NaN 29.005 1 32.637 32.137 33.137 3.6316 0 0 0 0.53105 1 4065 4065 1.6526 0 1 2197 11372 1361 1364 2820 2820 0.0704326012232741 CGNKKQLL 8 Unmodified _CGNKKQLL_ 0 0 0 REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|127|1|anti-sense REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|127|1|anti-sense MSMS UPN47_class_I_Rep_2 3 452.2569274902344 2 452.257662 902.500772 NaN NaN NaN NaN NaN NaN NaN 34.429 1 37.854 37.354 38.354 3.4253 0 0 0 0.40604 1 6226 6226 2.5775 0 1 + 2198 31490 1362 1365 2821 2821 0.04562148745264949 CGRCEYPCTCC 11 Unmodified _CGRCEYPCTCC_ 0 0 0 L1ME3A_dup14733|chr19:55234600-55235076:+|2.8807482193538747|0.3628267150946762|2.99|151.0|24|3|anti-sense L1ME3A_dup14733|chr19:55234600-55235076:+|2.8807482193538747|0.3628267150946762|2.99|151.0|24|3|anti-sense L1ME3A_dup14733|chr19:55234600-55235076:+|2.8807482193538747|0.3628267150946762|2.99|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_1 2 619.2002563476562 2 619.199989 1236.38543 NaN NaN NaN NaN NaN NaN NaN 117.05 1 120.66 120.16 121.16 3.6036 0 0 0 0.38417 1 29006 29006 0.30703 0.30703 1 2199 12648 1363 1366 2822 2822 -0.22331150826221347 CGSKANIKHK 10 Unmodified _CGSKANIKHK_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MSMS UPN48_class_I_Rep_1 5 543.2975463867188 2 543.29785 1084.58115 NaN NaN NaN NaN NaN NaN NaN 26.779 1 30.342 29.842 30.842 3.5629 0 0 0 0.53105 1 3345 3345 1.3295 0.5359 1 2200 16622 1364 1367 2823 2823 0.042240100683102355 CGVFYGVGVTR 11 Unmodified _CGVFYGVGVTR_ 0 0 0 REV__L1MC3_dup11284|chr16:29124976-29125612:-|2.394536474346249|0.2348023187218262|3.35|151.0|25|1|anti-sense REV__L1MC3_dup11284|chr16:29124976-29125612:-|2.394536474346249|0.2348023187218262|3.35|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_2 3 579.292724609375 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 42.605 1 45.966 45.466 46.466 3.3611 0 0 0 0.38417 1 8705 8705 5.7319 3.4291 1 + 2201 26708 1365 1368 2824 2824 -0.002108120258526469 CGWWWHLL 8 Unmodified _CGWWWHLL_ 0 0 0 REV__L1PA3_dup1600|chr3:11484550-11486823:-|2.7416055621894864|0.0506001002581998|5.76|151.0|62|3|sense REV__L1PA3_dup1600|chr3:11484550-11486823:-|2.7416055621894864|0.0506001002581998|5.76|151.0|62|3|sense MSMS UPN48_class_I_Rep_2 6 550.7484130859375 2 550.760372 1099.50619 NaN NaN NaN NaN NaN NaN NaN 31.814 1 35.455 34.955 35.955 3.641 0 0 0 0.40738 1 4834 4834 0.79363 0.10326 1 + 2202 29513 1366 1369 2825 2825 -0.03958127672285627 CHAHMYSEY 9 Unmodified _CHAHMYSEY_ 0 0 0 L1ME3A_dup10525|chr11:70274938-70275827:-|1.1522482250596728|0.013691629621361|6.4|151.0|7|1|sense L1ME3A_dup10525|chr11:70274938-70275827:-|1.1522482250596728|0.013691629621361|6.4|151.0|7|1|sense L1ME3A_dup10525|chr11:70274938-70275827:-|1.1522482250596728|0.013691629621361|6.4|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 570.7139282226562 2 570.715501 1139.41645 NaN NaN NaN NaN NaN NaN NaN 116.03 1 119.63 119.13 120.13 3.5943 0 0 0 0.39428 1 28726 28726 2.0598 0.21551 1 2203 12619 1367 1370 2826 2826 -0.1476817013381151 CHAKRSLKRI 10 Unmodified _CHAKRSLKRI_ 0 0 0 L1MC3_dup5454|chr7:67209879-67210628:-|1.4811010828599307|0.0332439408307983|5.48|151.0|27|3|sense L1MC3_dup5454|chr7:67209879-67210628:-|1.4811010828599307|0.0332439408307983|5.48|151.0|27|3|sense L1MC3_dup5454|chr7:67209879-67210628:-|1.4811010828599307|0.0332439408307983|5.48|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 606.3614501953125 2 606.361316 1210.70808 NaN NaN NaN NaN NaN NaN NaN 39.232 1 39.232 38.732 39.732 0 0 0 0 0.53105 1 7523 7523 0.45834 0 1 2204 11355 1368 1371 2827 2827 0.11115356013306155 CHAYWAPNFW 10 Unmodified _CHAYWAPNFW_ 0 0 0 nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF nc|ENSG00000159063|Q9BVK2-2|ALG8 nc|ENSG00000159063|Q9BVK2-2|ALG8 MSMS UPN47_class_I_Rep_1 2 647.7772827148438 2 647.776751 1293.53895 NaN NaN NaN NaN NaN NaN NaN 41.308 1 44.98 44.48 45.48 3.6719 0 0 0 0.53105 1 8281 8281 1.4819 0 1 2205 3820 1369 1372 2828 2828 -0.0960796534009205 CHAYWAPNFW 10 Unmodified _CHAYWAPNFW_ 0 0 0 nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF nc|ENSG00000159063|Q9BVK2-2|ALG8 nc|ENSG00000159063|Q9BVK2-2|ALG8 MSMS UPN47_class_I_Rep_3 4 647.7761840820312 2 647.776751 1293.53895 NaN NaN NaN NaN NaN NaN NaN 42.089 1 45.329 44.829 45.829 3.2394 0 0 0 0.53105 1 8602 8602 1.4819 0 1 2206 3820 1369 1372 2829 2829 -0.0960796534009205 CHDEDDDEEE 10 Unmodified _CHDEDDDEEE_ 0 0 0 nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 MSMS UPN46_class_I_Rep_3 1 618.1854858398438 2 618.185679 1234.35681 NaN NaN NaN NaN NaN NaN NaN 118.33 1 118.33 117.83 118.83 0 0 0 0 0.53105 1 29369 29369 0 0 1 2207 1160 1370 1373 2830 2830 -0.25099859124838986 CHDFECMD 8 Unmodified _CHDFECMD_ 0 0 0 REV__L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|215|2|anti-sense REV__L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|215|2|anti-sense MSMS UPN47_class_I_Rep_2 3 500.3312072753906 2 500.153888 998.293223 NaN NaN NaN NaN NaN NaN NaN 19.721 1 23.117 22.617 23.617 3.3963 0 0 0 0.40746 1 1914 1914 0.69038 0.69038 1 + 2208 30683 1371 1374 2831 2831 -0.20599169576587428 CHEERDLLP 9 Unmodified _CHEERDLLP_ 0 0 0 REV__ENSG00000144597|ENST00000396842|EAF1 REV__ENSG00000144597|ENST00000396842|EAF1 MSMS UPN47_class_I_Rep_2 3 556.2622680664062 2 556.263673 1110.51279 NaN NaN NaN NaN NaN NaN NaN 74.554 1 77.867 77.367 78.367 3.3127 0 0 0 0.38639 1 18376 18376 3.9444 0.3479 1 + 2209 19488 1372 1375 2832 2832 -0.03804279302221403 CHELAKAVLQ 10 Unmodified _CHELAKAVLQ_ 0 0 0 REV__ENST00000556729.1_1_14:24108037-24109131:+|nuORF REV__ENST00000556729.1_1_14:24108037-24109131:+|nuORF MSMS UPN47_class_I_Rep_2 3 556.2987060546875 2 556.300059 1110.58556 NaN NaN NaN NaN NaN NaN NaN 60.763 1 64.028 63.528 64.528 3.2654 0 0 0 0.53105 1 14238 14238 2.9952 0.69251 1 + 2210 18135 1373 1376 2833 2833 0.03469474491203073 CHETPPYL 8 Unmodified _CHETPPYL_ 0 0 0 REV__L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|66|1|anti-sense REV__L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|66|1|anti-sense MSMS UPN47_class_I_Rep_3 4 480.2175598144531 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 25.292 1 28.643 28.143 29.143 3.3509 0 0 0 0.40738 1 3532 3532 0.79363 0 1 + 2211 28535 1374 1377 2834 2834 -0.059021232797022094 CHFEHHLHVL 10 Unmodified _CHFEHHLHVL_ 0 0 0 ASTN2|p.L722Hfs*25|1|0.04|ENSG00000148219|chr9:116820659-116820660|-/T|frameshift_variant ASTN2|p.L722Hfs*25|1|0.04|ENSG00000148219|chr9:116820659-116820660|-/T|frameshift_variant ASTN2|p.L722Hfs*25|1|0.04|ENSG00000148219|chr9:116820659-116820660|-/T|frameshift_variant MSMS UPN47_class_I_Rep_1 2 636.30712890625 2 636.308749 1270.60295 NaN NaN NaN NaN NaN NaN NaN 54.448 1 57.949 57.449 58.449 3.5014 0 0 0 0.53105 1 12283 12283 1.6526 0.32309 1 2212 410 1375 1378 2835 2835 -0.021531851831468884 CHFVLASLY 9 Unmodified _CHFVLASLY_ 0 0 0 L1ME4b_dup6553|chr5:75377099-75377641:+|1.1267927742535362|0.3529259736665817|1.67|151.0|24|1|anti-sense L1ME4b_dup6553|chr5:75377099-75377641:+|1.1267927742535362|0.3529259736665817|1.67|151.0|24|1|anti-sense L1ME4b_dup6553|chr5:75377099-75377641:+|1.1267927742535362|0.3529259736665817|1.67|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7642822265625 2 526.76532 1051.51609 NaN NaN NaN NaN NaN NaN NaN 52.603 1 55.936 55.436 56.436 3.3332 0 0 0 0.35339 1 11744 11744 7.9102 1.187 1 2213 12935 1376 1379 2836 2836 -0.007609844575426905 CHHMLHVHTY 10 Unmodified _CHHMLHVHTY_ 0 0 0 REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|171|3|sense REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|171|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 639.7886962890625 2 639.28696 1276.55937 0.4305 0.00027521 -1.2169 -0.00077794 -0.78639 -0.00050273 639.2861381105574 46.844 0.6406 50.363 50.116 50.757 3.5192 71 40 3 0 0 0 0.54078 1 9294 9294 6.7232 0.51738 1 190410 + 2214 29977 1377 1380 2837 2837 -0.06785117951903885 CHHMLHVHTY 10 Unmodified _CHHMLHVHTY_ 0 0 0 REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|171|3|sense REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|171|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 639.2863159179688 2 639.28696 1276.55937 0.40551 0.00025924 -1.0573 -0.00067593 -0.65181 -0.00041669 639.2864172138244 46.585 0.52763 50.334 50.07 50.597 3.7494 61 33 2 0 0 0 0.51003 2 9135 9053;9135 10.824 2.0785 1 152920 + 2215 29977 1377 1380 2838;2839 2839 -0.06785117951903885 CHHVPYLFY 9 Unmodified _CHHVPYLFY_ 0 0 0 REV__L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|119|3|anti-sense REV__L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|119|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 589.2736206054688 2 589.776219 1177.53789 0.46133 0.00027208 -0.49583 -0.00029243 -0.034497 -2.0346E-05 589.7760483344495 75.424 0.17594 78.67 78.532 78.708 3.2464 22 15 2 0 0 0 0.11775 1 18693 18693 9.3474 0 1 125210 + 2216 29126 1378 1381 2840 2840 -0.04378179708987773 CHIIRLPSF 9 Unmodified _CHIIRLPSF_ 0 0 0 THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|72|2|anti-sense THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|72|2|anti-sense THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|72|2|anti-sense MSMS UPN46_class_I_Rep_3 1 543.3012084960938 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 61.348 1 61.348 60.848 61.848 0 0 0 0 0.38299 1 13646 13646 4.756 0.42677 1 2217 32939 1379 1382 2841 2841 0.046260995620059475 CHIWKKVF 8 Unmodified _CHIWKKVF_ 0 0 0 REV__L1MA3_dup4388|chr8:47789476-47791194:+|1.0352244219544928|0.0504214370668037|4.36|150.0|55|1|anti-sense REV__L1MA3_dup4388|chr8:47789476-47791194:+|1.0352244219544928|0.0504214370668037|4.36|150.0|55|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7933349609375 2 530.791672 1059.56879 NaN NaN NaN NaN NaN NaN NaN 119.53 1 123.19 122.69 123.69 3.6652 0 0 0 0.40738 1 28687 28687 0.79363 0.10326 1 + 2218 25035 1380 1383 2842 2842 0.041390183959265414 CHLGPLHSWF 10 Unmodified _CHLGPLHSWF_ 0 0 0 AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|15|3|anti-sense AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|15|3|anti-sense AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|15|3|anti-sense MSMS UPN48_class_I_Rep_1 5 598.78759765625 2 598.787118 1195.55968 NaN NaN NaN NaN NaN NaN NaN 31.814 1 35.349 34.849 35.849 3.5342 0 0 0 0.53105 1 4754 4754 1.4819 0.68827 1 2219 270 1381 1384 2843 2843 -0.030273749604248223 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.8052368164062 2 586.805311 1171.59607 0.51093 0.00029982 -0.86851 -0.00050965 -0.35758 -0.00020983 586.8045753205025 65.208 0.37462 68.662 68.444 68.819 3.4541 33 26 2 0 0 0 0.35081 2 14819 14769;14819 10.824 1.4408 1 97912 2220 10525 1382 1385 2844;2845 2845 0.017135019362967796 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 586.2926025390625 2 586.805311 1171.59607 0.51093 0.00029982 -0.86851 -0.00050965 -0.35758 -0.00020983 586.8045753205025 65.208 0.37462 68.662 68.444 68.819 3.4541 33 26 2 0 0 0 0.12321 1 14798 14798 3.9444 0.94915 1 97912 2221 10525 1382 1385 2846 2846 0.017135019362967796 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.805419921875 2 586.805311 1171.59607 NaN NaN NaN NaN NaN NaN NaN 64.942 1 68.421 67.921 68.921 3.4792 0 0 0 0.37476 1 14723 14723 6.7232 0 1 2222 10525 1382 1385 2847 2847 0.017135019362967796 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 586.8057250976562 2 586.805311 1171.59607 NaN NaN NaN NaN NaN NaN NaN 64.185 1 67.694 67.194 68.194 3.5083 0 0 0 0.38639 1 14410 14410 3.9444 0 1 2223 10525 1382 1385 2848 2848 0.017135019362967796 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 586.8046875 2 586.805311 1171.59607 NaN NaN NaN NaN NaN NaN NaN 64.872 1 68.38 67.88 68.88 3.508 0 0 0 0.38639 1 14616 14616 3.9444 0 1 2224 10525 1382 1385 2849 2849 0.017135019362967796 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 586.8058471679688 2 586.805311 1171.59607 NaN NaN NaN NaN NaN NaN NaN 65.062 1 68.57 68.07 69.07 3.5077 0 0 0 0.38639 1 14674 14674 3.9444 0 1 2225 10525 1382 1385 2850 2850 0.017135019362967796 CHLKHFIQF 9 Unmodified _CHLKHFIQF_ 0 0 0 L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|47|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 586.805311 1171.59607 0.53673 0.00031495 -1.5853 -0.00093024 -1.0485 -0.00061529 586.804949027099 65.137 0.079323 68.645 68.597 68.677 3.5077 -0.0086948 -0.00082303 NaN 10.824 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 53982 2226 10525 1382 1385 0.017135019362967796 CHLMMEYILR 10 Unmodified _CHLMMEYILR_ 0 0 0 Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|63|3|anti-sense Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|63|3|anti-sense Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|63|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 436.7747802734375 3 436.880228 1307.61885 -0.026146 -1.1423E-05 -0.67444 -0.00029465 -0.70059 -0.00030607 437.2148837444051 82 0.2137 85.575 85.474 85.687 3.5753 37 26 2 0 0 0 0.84575 1 19562 19562 0.69767 0 1 72801 2227 33387 1383 1386 2851 2851 -0.02264983052759817 CHLSNEDKLSL 11 Unmodified _CHLSNEDKLSL_ 0 0 0 L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|7|1|sense L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|7|1|sense L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 629.8089599609375 2 629.808445 1257.60234 0.52589 0.00033121 0.039039 2.4587E-05 0.56493 0.0003558 629.8083581630667 65.129 0.38573 68.608 68.497 68.883 3.4792 39 26 2 0 0 0 0.65821 1 14762 14762 2.4985 0 1 123800 2228 12324 1384 1387 2852 2852 -0.016160694135123777 CHQSAMMV 8 Unmodified _CHQSAMMV_ 0 0 0 REV__L1MB7_dup21127|chr19:6090392-6091209:+|1.5472536419771976|0.0296892466602248|5.7|151.0|28|3|sense REV__L1MB7_dup21127|chr19:6090392-6091209:+|1.5472536419771976|0.0296892466602248|5.7|151.0|28|3|sense MSMS UPN48_class_I_Rep_1 5 453.68695068359375 2 453.685158 905.355764 NaN NaN NaN NaN NaN NaN NaN 98.369 1 101.98 101.48 102.48 3.6065 0 0 0 0.40404 1 23738 23738 5.2307 0.47466 1 + 2229 26208 1385 1388 2853 2853 -0.10069978717740469 CHQYHYSCY 9 Unmodified _CHQYHYSCY_ 0 0 0 REV__THE1A-int_dup63|chr1:113719303-113719799:-|1.4325488124362025|0.1497597929143399|3.26|151.0|30|3|anti-sense REV__THE1A-int_dup63|chr1:113719303-113719799:-|1.4325488124362025|0.1497597929143399|3.26|151.0|30|3|anti-sense MSMS UPN47_class_I_Rep_1 2 401.8164367675781 3 401.816393 1202.42735 NaN NaN NaN NaN NaN NaN NaN 111.49 1 115.06 114.56 115.56 3.572 0 0 0 0.4007 1 27506 27506 0.23584 0.15249 1 + 2230 32218 1386 1389 2854 2854 -0.16576767759511313 CHSFLLLYY 9 Unmodified _CHSFLLLYY_ 0 0 0 REV__L1M1_dup210|chr1:93250412-93251994:-|2.408170501080328|0.1297569635876913|4.21|151.0|71|1|anti-sense REV__L1M1_dup210|chr1:93250412-93251994:-|2.408170501080328|0.1297569635876913|4.21|151.0|71|1|anti-sense MSMS UPN47_class_I_Rep_3 4 579.7869262695312 2 579.786253 1157.55795 NaN NaN NaN NaN NaN NaN NaN 43.909 1 47.151 46.651 47.651 3.2419 0 0 0 0.38478 1 9157 9157 4.3292 0 1 + 2231 24032 1387 1390 2855 2855 -0.014524287690392157 CHSHSSLQQL 10 Unmodified _CHSHSSLQQL_ 0 0 0 Tigger1_dup4767|chr6:36036276-36036735:+|1.013883142424545|0.008216974561172|6.95|151.0|9|2|sense Tigger1_dup4767|chr6:36036276-36036735:+|1.013883142424545|0.008216974561172|6.95|151.0|9|2|sense Tigger1_dup4767|chr6:36036276-36036735:+|1.013883142424545|0.008216974561172|6.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 570.2681884765625 2 570.266747 1138.51894 NaN NaN NaN NaN NaN NaN NaN 71.994 1 75.369 74.869 75.869 3.3751 0 0 0 0.53105 1 17588 17588 2.9952 0.49676 1 2232 33106 1388 1391 2856 2856 -0.04477761070688757 CHTMHPWV 8 Unmodified _CHTMHPWV_ 0 0 0 HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|27|1|sense HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|27|1|sense HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|27|1|sense MSMS UPN46_class_I_Rep_3 1 505.7321472167969 2 505.72039 1009.42623 NaN NaN NaN NaN NaN NaN NaN 77.738 1 77.738 77.238 78.238 0 0 0 0 0.40738 1 18184 18184 0.79363 0.10326 1 2233 8234 1389 1392 2857 2857 -0.07810937337774249 CHTNCCDCWF 10 Unmodified _CHTNCCDCWF_ 0 0 0 REV__L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|71|1|anti-sense REV__L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_2 6 616.1929321289062 2 616.193022 1230.37149 NaN NaN NaN NaN NaN NaN NaN 31.769 1 35.41 34.91 35.91 3.641 0 0 0 0.53105 1 4820 4820 0 0 1 + 2234 24552 1390 1393 2858 2858 -0.23448060263035586 CHVHCHRP 8 Unmodified _CHVHCHRP_ 0 0 0 REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF MSMS UPN47_class_I_Rep_3 4 494.71875 2 494.721255 987.427958 NaN NaN NaN NaN NaN NaN NaN 27.633 1 30.975 30.475 31.475 3.3422 0 0 0 0.40604 1 4222 4222 2.5775 1.7838 1 + 2235 22154 1391 1394 2859 2859 -0.06625883529159182 CHVRMERLY 9 Unmodified _CHVRMERLY_ 0 0 0 REV__ENST00000457422.6_1_17:42755944-42756196:-|nuORF REV__ENST00000457422.6_1_17:42755944-42756196:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 603.7968139648438 2 603.79716 1205.57977 0.078163 4.7195E-05 1.5635 0.00094401 1.6416 0.00099121 603.7981872892625 18.357 0.14952 18.357 18.252 18.402 0 23 17 2 0 0 0 0.50088 1 1597 1597 0.52476 0.066424 1 33751 + 2236 22415 1392 1395 2860 2860 -0.014799472921140477 CHWFLWFQ 8 Unmodified _CHWFLWFQ_ 0 0 0 REV__L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|269|3|anti-sense REV__L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|269|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.7652587890625 2 583.765655 1165.51676 0.089608 5.231E-05 -1.0385 -0.00060623 -0.94887 -0.00055392 583.7651524007321 44.831 0.75816 48.531 48.269 49.028 3.6999 71 48 2 0 0 0 0.82752 1 9371 9371 10.183 2.0279 1 86605 + 2237 30023 1393 1396 2861 2861 -0.05938145017876195 CHWMWCCF 8 Unmodified _CHWMWCCF_ 0 0 0 REV__MLT1L_dup10935|chr19:37928761-37929161:-|1.122117341419466|0.0072170161499917|7.28|150.0|2|1|sense REV__MLT1L_dup10935|chr19:37928761-37929161:-|1.122117341419466|0.0072170161499917|7.28|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 558.1908569335938 2 558.189554 1114.36455 NaN NaN NaN NaN NaN NaN NaN 112.19 1 112.19 111.69 112.69 0 0 0 0 0.40738 1 27694 27694 0.79363 0.10326 1 + 2238 31798 1394 1397 2862 2862 -0.18805328352937067 CHWMWCCF 8 Unmodified _CHWMWCCF_ 0 0 0 REV__MLT1L_dup10935|chr19:37928761-37929161:-|1.122117341419466|0.0072170161499917|7.28|150.0|2|1|sense REV__MLT1L_dup10935|chr19:37928761-37929161:-|1.122117341419466|0.0072170161499917|7.28|150.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 558.190673828125 2 558.189554 1114.36455 NaN NaN NaN NaN NaN NaN NaN 116.93 1 120.37 119.87 120.87 3.4425 0 0 0 0.40738 1 28785 28785 0.79363 0 1 + 2239 31798 1394 1397 2863 2863 -0.18805328352937067 CHWNFNRH 8 Unmodified _CHWNFNRH_ 0 0 0 L1MA8_dup4825|chr8:23152670-23154337:+|1.3264783552140031|0.0744781155063724|4.15|150.0|94|2|anti-sense L1MA8_dup4825|chr8:23152670-23154337:+|1.3264783552140031|0.0744781155063724|4.15|150.0|94|2|anti-sense L1MA8_dup4825|chr8:23152670-23154337:+|1.3264783552140031|0.0744781155063724|4.15|150.0|94|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.2432861328125 2 557.243409 1112.47227 NaN NaN NaN NaN NaN NaN NaN 117.01 1 120.64 120.14 121.14 3.6254 0 0 0 0.40738 1 28511 28511 0.79363 0 1 2240 10054 1395 1398 2864 2864 -0.07947156111322329 CHWVCCTDYF 10 Unmodified _CHWVCCTDYF_ 0 0 0 L1MA9_dup10373|chrX:154704537-154706133:+|2.4439261091546407|0.0709168493570171|5.11|150.0|69|1|anti-sense L1MA9_dup10373|chrX:154704537-154706133:+|2.4439261091546407|0.0709168493570171|5.11|150.0|69|1|anti-sense L1MA9_dup10373|chrX:154704537-154706133:+|2.4439261091546407|0.0709168493570171|5.11|150.0|69|1|anti-sense MSMS UPN47_class_I_Rep_3 4 638.732177734375 2 638.732837 1275.45112 NaN NaN NaN NaN NaN NaN NaN 26.073 1 29.421 28.921 29.921 3.3478 0 0 0 0.53105 1 3761 3761 1.6526 0.17072 1 2241 10078 1396 1399 2865 2865 -0.17558670317384895 CHWVGWNN 8 Unmodified _CHWVGWNN_ 0 0 0 REV__Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|74|1|anti-sense REV__Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|74|1|anti-sense MSMS UPN46_class_I_Rep_3 1 508.2120666503906 2 508.213786 1014.41302 NaN NaN NaN NaN NaN NaN NaN 28.024 1 28.024 27.524 28.524 0 0 0 0 0.40625 1 4244 4244 2.3027 0.24298 1 + 2242 32823 1397 1400 2866 2866 -0.09361052125507285 CHYCEVHYDRD 11 Unmodified _CHYCEVHYDRD_ 0 0 0 REV__ENST00000474665.1_1_3:45707185-45715939:+|nuORF REV__ENST00000474665.1_1_3:45707185-45715939:+|nuORF MSMS UPN48_class_I_Rep_3 7 480.77093505859375 3 480.520416 1438.53942 NaN NaN NaN NaN NaN NaN NaN 23.452 1 27.202 26.702 27.702 3.7507 0 0 0 0.38417 1 2568 2568 0.50596 0 1 + 2243 19493 1398 1401 2867 2867 -0.1623095847321565 CHYMLVLP 8 Unmodified _CHYMLVLP_ 0 0 0 L1ME1_dup20809|chr11:20503371-20504188:-|2.005366606594341|0.3375143797853615|2.57|151.0|54|3|anti-sense L1ME1_dup20809|chr11:20503371-20504188:-|2.005366606594341|0.3375143797853615|2.57|151.0|54|3|anti-sense L1ME1_dup20809|chr11:20503371-20504188:-|2.005366606594341|0.3375143797853615|2.57|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_3 4 488.28564453125 2 488.243166 974.47178 NaN NaN NaN NaN NaN NaN NaN 87.204 1 90.584 90.084 91.084 3.3801 0 0 0 0.40738 1 21850 21850 0.79363 0 1 2244 12289 1399 1402 2868 2868 -0.016477118753982722 CIAIPKKKM 9 Unmodified _CIAIPKKKM_ 0 0 0 ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451 ENST00000444273.6_1_6:56954967-57015704:+|nuORF ENST00000444273.6_1_6:56954967-57015704:+|nuORF MSMS UPN47_class_I_Rep_1 2 516.3081665039062 2 516.308841 1030.60313 NaN NaN NaN NaN NaN NaN NaN 72.559 1 75.939 75.439 76.439 3.3799 0 0 0 0.39428 1 17762 17762 2.0598 0 1 2245 2003 1400 1403 2869 2869 0.08905098492505203 CICIWVPY 8 Unmodified _CICIWVPY_ 0 0 0 L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_1 2 498.736572265625 2 498.737717 995.460881 NaN NaN NaN NaN NaN NaN NaN 18.603 1 22.184 21.684 22.684 3.5806 0 0 0 0.4032 1 1585 1585 6.3541 1.0572 1 2246 9128 1401 1404 2870 2870 -0.03703114249685768 CICIWVPY 8 Unmodified _CICIWVPY_ 0 0 0 L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_1 2 498.73675537109375 2 498.737717 995.460881 NaN NaN NaN NaN NaN NaN NaN 18.727 1 22.308 21.808 22.808 3.5806 0 0 0 0.40581 1 1616 1616 2.8892 0.58649 1 2247 9128 1401 1404 2871 2871 -0.03703114249685768 CICIWVPY 8 Unmodified _CICIWVPY_ 0 0 0 L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_2 3 498.73651123046875 2 498.737717 995.460881 NaN NaN NaN NaN NaN NaN NaN 17.432 1 20.819 20.319 21.319 3.387 0 0 0 0.40581 1 1303 1303 2.8892 0.82947 1 2248 9128 1401 1404 2872 2872 -0.03703114249685768 CICVQCCWT 9 Unmodified _CICVQCCWT_ 0 0 0 REV__L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|76|3|anti-sense REV__L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7576293945312 2 529.699951 1057.38535 NaN NaN NaN NaN NaN NaN NaN 117.02 1 120.63 120.13 121.13 3.6036 0 0 0 0.39428 1 28997 28997 2.0598 0 1 + 2249 27718 1402 1405 2873 2873 -0.14104782763934054 CIDTPQFVRSP 11 Unmodified _CIDTPQFVRSP_ 0 0 0 L1ME1_dup22832|chr12:89698215-89698643:+|1.2880674573392576|0.0032579669094479|8.63|150.0|29|3|anti-sense L1ME1_dup22832|chr12:89698215-89698643:+|1.2880674573392576|0.0032579669094479|8.63|150.0|29|3|anti-sense L1ME1_dup22832|chr12:89698215-89698643:+|1.2880674573392576|0.0032579669094479|8.63|150.0|29|3|anti-sense MSMS UPN48_class_I_Rep_3 7 631.8146362304688 2 631.81353 1261.61251 NaN NaN NaN NaN NaN NaN NaN 35.457 1 39.129 38.629 39.629 3.6721 0 0 0 0.38417 1 5751 5751 1.0715 0.46996 1 2250 12306 1403 1406 2874 2874 -0.007834616882746559 CIFFKHME 8 Unmodified _CIFFKHME_ 0 0 0 L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|27|3|sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|27|3|sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 527.7457885742188 2 527.746073 1053.47759 NaN NaN NaN NaN NaN NaN NaN 81.628 1 81.628 81.128 82.128 0 0 0 0 0.40738 1 19287 19287 0.79363 0 1 2251 13078 1404 1407 2875 2875 -0.04700613363706907 CIFPPVFFF 9 Unmodified _CIFPPVFFF_ 0 0 0 L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_2 3 558.7818603515625 2 558.782982 1115.55141 NaN NaN NaN NaN NaN NaN NaN 77.106 1 80.437 79.937 80.937 3.3315 0 0 0 0.381 1 19111 19111 5.2307 0.33366 1 2252 13189 1405 1408 2876 2876 -0.0017432192976229999 CIFPPVFFF 9 Unmodified _CIFPPVFFF_ 0 0 0 L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_2 3 558.7819213867188 2 558.782982 1115.55141 NaN NaN NaN NaN NaN NaN NaN 77.267 1 80.598 80.098 81.098 3.3315 0 0 0 0.381 1 19158 19158 5.2307 1.6342 1 2253 13189 1405 1408 2877 2877 -0.0017432192976229999 CIFPPVFFF 9 Unmodified _CIFPPVFFF_ 0 0 0 L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_2 3 558.7957763671875 2 558.782982 1115.55141 NaN NaN NaN NaN NaN NaN NaN 77.684 1 81.026 80.526 81.526 3.3428 0 0 0 0.3264 1 19283 19283 9.3474 2.9933 1 2254 13189 1405 1408 2878 2878 -0.0017432192976229999 CIHKHEWNCS 10 Unmodified _CIHKHEWNCS_ 0 0 0 REV__HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|36|1|sense REV__HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|36|1|sense MSMS UPN47_class_I_Rep_1 2 628.7692260742188 2 628.7686 1255.52265 NaN NaN NaN NaN NaN NaN NaN 43.683 1 47.378 46.878 47.878 3.6951 0 0 0 0.53105 1 9007 9007 3.2813 0 1 + 2255 23803 1406 1409 2879 2879 -0.09489414568474785 CIIYLVPHCW 10 Unmodified _CIIYLVPHCW_ 0 0 0 L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|116|2|anti-sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|116|2|anti-sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_2 6 623.8073120117188 2 623.809205 1245.60386 NaN NaN NaN NaN NaN NaN NaN 67.414 1 70.91 70.41 71.41 3.4964 0 0 0 0.53105 1 15479 15479 4.3292 0.73274 1 2256 14074 1407 1410 2880 2880 -0.00912106858459083 CIKVFIVFS 9 Unmodified _CIKVFIVFS_ 0 0 0 L1PA10_dup6235|chr16:68107730-68109997:-|2.900451511215|0.0247620028650433|6.87|150.0|87|1|anti-sense;L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|176|1|anti-sense;L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|349|3|anti-sense;L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|281|2|anti-sense;L1PA11_dup840|chr3:158242059-158246062:-|1.630919204443825|0.0240427203077966|6.08|151.0|211|2|anti-sense L1PA10_dup6235|chr16:68107730-68109997:-|2.900451511215|0.0247620028650433|6.87|150.0|87|1|anti-sense L1PA10_dup6235|chr16:68107730-68109997:-|2.900451511215|0.0247620028650433|6.87|150.0|87|1|anti-sense MSMS UPN47_class_I_Rep_1 2 528.3015747070312 2 528.301539 1054.58852 NaN NaN NaN NaN NaN NaN NaN 96.025 1 99.79 99.29 100.29 3.7648 0 0 0 0.39518 1 23823 23823 1.8442 1.0506 1 2257 13619 1408 1411 2881 2881 0.06341349616013758 CIKWASYSC 9 Unmodified _CIKWASYSC_ 0 0 0 REV__L1MC3_dup4565|chr6:30211670-30212553:+|2.0323838852759946|0.1507466038760466|3.75|150.0|46|1|anti-sense REV__L1MC3_dup4565|chr6:30211670-30212553:+|2.0323838852759946|0.1507466038760466|3.75|150.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 530.7344360351562 2 530.733163 1059.45177 NaN NaN NaN NaN NaN NaN NaN 19.259 1 22.839 22.339 23.339 3.5806 0 0 0 0.38478 1 1741 1741 4.3292 2.485 1 + 2258 26747 1409 1412 2882 2882 -0.07557507606020408 CILKLYDYF 9 Unmodified _CILKLYDYF_ 0 0 0 REV__L1ME4a_dup47|chr1:8405099-8405640:+|2.1685539131991103|0.0668694295520344|5.02|151.0|25|1|anti-sense REV__L1ME4a_dup47|chr1:8405099-8405640:+|2.1685539131991103|0.0668694295520344|5.02|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_1 2 589.301025390625 2 589.301736 1176.58892 NaN NaN NaN NaN NaN NaN NaN 48.902 1 52.561 52.061 53.061 3.6592 0 0 0 0.4007 1 10592 10592 0.52476 0.066424 1 + 2259 28238 1410 1413 2883 2883 0.007687245451961644 CILLHKKH 8 Unmodified _CILLHKKH_ 0 0 0 REV__Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|44|1|anti-sense REV__Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|44|1|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.297122 990.579691 NaN NaN NaN NaN NaN NaN NaN 35.522 1 35.522 35.022 36.022 0 0 0 0 0.40738 1 6477 6477 0.79363 0 1 + 2260 32407 1411 1414 2884 2884 0.0840242077019866 CILWKKHC 8 Unmodified _CILWKKHC_ 0 0 0 ENST00000326639.10_2_4:129012597-129019357:+|nuORF ENST00000326639.10_2_4:129012597-129019357:+|nuORF ENST00000326639.10_2_4:129012597-129019357:+|nuORF MSMS UPN48_class_I_Rep_1 5 515.7706909179688 2 515.769883 1029.52521 NaN NaN NaN NaN NaN NaN NaN 17.569 1 21.095 20.595 21.595 3.5261 0 0 0 0.40746 1 1041 1041 0.69038 0 1 2261 6169 1412 1415 2885 2885 0.01163085627149485 CIMTLSLMTV 10 Unmodified _CIMTLSLMTV_ 0 0 0 L1MA9_dup11104|chr10:110947561-110948828:+|1.8694188264633|0.0324417594894032|5.85|151.0|67|2|anti-sense L1MA9_dup11104|chr10:110947561-110948828:+|1.8694188264633|0.0324417594894032|5.85|151.0|67|2|anti-sense L1MA9_dup11104|chr10:110947561-110948828:+|1.8694188264633|0.0324417594894032|5.85|151.0|67|2|anti-sense MSMS UPN47_class_I_Rep_3 4 556.27978515625 2 556.281631 1110.54871 NaN NaN NaN NaN NaN NaN NaN 43.217 1 46.459 45.959 46.959 3.2419 0 0 0 0.53105 1 8946 8946 1.4819 0 1 2262 10088 1413 1416 2886 2886 -0.002142814412309235 CINQDSSPVHY 11 Unmodified _CINQDSSPVHY_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS UPN47_class_I_Rep_1 2 421.5204162597656 3 421.520522 1261.53974 -0.47781 -0.0002014 0.094821 3.9969E-05 -0.38298 -0.00016144 421.52059925125934 24.387 1.2805 28.117 27.742 29.022 3.7298 253 105 4 0 0 0 0.59712 1 3270 3270 2.4348 0 1 441120 + 2263 17664 1414 1417 2887 2887 -0.08057215481676394 CINTDGRKYC 10 Unmodified _CINTDGRKYC_ 0 0 0 REV__L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|6|1|sense REV__L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 586.7640380859375 2 586.762983 1171.51141 NaN NaN NaN NaN NaN NaN NaN 29.49 1 33.04 32.54 33.54 3.5499 0 0 0 0.53105 1 4106 4106 1.3295 0.13619 1 + 2264 28056 1415 1418 2888 2888 -0.06748236662610907 CINWICYLNI 10 Unmodified _CINWICYLNI_ 0 0 0 REV__L1MA9_dup6734|chr7:37754537-37755619:-|1.7637274126722595|0.0177300007005933|6.64|151.0|12|1|sense REV__L1MA9_dup6734|chr7:37754537-37755619:-|1.7637274126722595|0.0177300007005933|6.64|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 627.8038940429688 2 627.804119 1253.59369 NaN NaN NaN NaN NaN NaN NaN 61.937 1 65.103 64.603 65.603 3.1667 0 0 0 0.53105 1 14648 14648 3.5965 1.5367 1 + 2265 25642 1416 1419 2889 2889 -0.022967145836673808 CIPIRTKN 8 Unmodified _CIPIRTKN_ 0 0 0 REV__L1M3_dup2583|chr7:66675469-66675956:+|1.0006118407869131|0.1114287191217054|3.17|151.0|14|3|sense REV__L1M3_dup2583|chr7:66675469-66675956:+|1.0006118407869131|0.1114287191217054|3.17|151.0|14|3|sense MSMS UPN48_class_I_Rep_2 6 472.7705993652344 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 30.927 1 34.563 34.063 35.063 3.6351 0 0 0 0.40738 1 4593 4593 0.79363 0 1 + 2266 24293 1417 1420 2890 2890 0.05329837636577395 CIPPCLFKA 9 Unmodified _CIPPCLFKA_ 0 0 0 L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|63|3|anti-sense L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|63|3|anti-sense L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 496.2602844238281 2 496.258816 990.50308 NaN NaN NaN NaN NaN NaN NaN 35.201 1 38.626 38.126 39.126 3.4253 0 0 0 0.39428 1 6460 6460 2.0598 0.21551 1 2267 11278 1418 1421 2891 2891 0.007448611586937659 CIRPWFFF 8 Unmodified _CIRPWFFF_ 0 0 0 L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2792358398438 2 558.278398 1114.54224 NaN NaN NaN NaN NaN NaN NaN 77.141 1 80.473 79.973 80.973 3.3315 0 0 0 0.39819 1 19122 19122 8.5933 0 1 2268 13783 1419 1422 2892 2892 -0.010446704954119923 CIRPWFFF 8 Unmodified _CIRPWFFF_ 0 0 0 L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2777709960938 2 558.278398 1114.54224 NaN NaN NaN NaN NaN NaN NaN 77.225 1 80.557 80.057 81.057 3.3315 0 0 0 0.38547 1 19146 19146 13.508 0 1 2269 13783 1419 1422 2893 2893 -0.010446704954119923 CIRPWFFF 8 Unmodified _CIRPWFFF_ 0 0 0 L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2789916992188 2 558.278398 1114.54224 NaN NaN NaN NaN NaN NaN NaN 77.336 1 80.667 80.167 81.167 3.3315 0 0 0 0.38547 1 19179 19179 13.508 0 1 2270 13783 1419 1422 2894 2894 -0.010446704954119923 CIRPWFFF 8 Unmodified _CIRPWFFF_ 0 0 0 L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|177|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2794189453125 2 558.278398 1114.54224 NaN NaN NaN NaN NaN NaN NaN 77.434 1 80.765 80.265 81.265 3.3315 0 0 0 0.38547 1 19207 19207 13.508 0 1 2271 13783 1419 1422 2895 2895 -0.010446704954119923 CISGQLPCSLF 11 Unmodified _CISGQLPCSLF_ 0 0 0 L1MC4a_dup8771|chr16:81508159-81508672:-|1.2775698509186708|0.0242697500597223|5.72|150.0|24|2|anti-sense L1MC4a_dup8771|chr16:81508159-81508672:-|1.2775698509186708|0.0242697500597223|5.72|150.0|24|2|anti-sense L1MC4a_dup8771|chr16:81508159-81508672:-|1.2775698509186708|0.0242697500597223|5.72|150.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 584.2820434570312 2 584.280477 1166.5464 NaN NaN NaN NaN NaN NaN NaN 65.262 1 68.618 68.118 69.118 3.3557 0 0 0 0.38417 1 15555 15555 3.2813 0.70383 1 2272 11627 1420 1423 2896 2896 -0.03020993854693188 CISVCRTNMS 10 Unmodified _CISVCRTNMS_ 0 0 0 REV__L1PB3_dup1501|chr7:107502023-107504941:-|4.080127850017205|0.0597867171082652|6.09|151.0|155|2|anti-sense REV__L1PB3_dup1501|chr7:107502023-107504941:-|4.080127850017205|0.0597867171082652|6.09|151.0|155|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 557.780029296875 2 557.246111 1112.47767 0.23442 0.00013063 -0.024135 -1.3449E-05 0.21029 0.00011718 557.7477152173242 49.341 0.14082 53.001 52.879 53.02 3.6592 11 9 2 0 0 0 0.84575 1 10714 10714 21.537 4.5947 1 44274 + 2273 30542 1421 1424 2897 2897 -0.07406981426015591 CISWAPESSY 10 Unmodified _CISWAPESSY_ 0 0 0 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 MSMS UPN47_class_I_Rep_1 2 571.746826171875 2 571.744782 1141.47501 NaN NaN NaN NaN NaN NaN NaN 20.462 1 24.106 23.606 24.606 3.6436 0 0 0 0.53105 1 2060 2060 3.5965 0.31518 1 2274 726 1422 1425 2898 2898 -0.09006790287685362 CIWMKAIL 8 Unmodified _CIWMKAIL_ 0 0 0 L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 489.2690734863281 2 489.269184 976.523815 NaN NaN NaN NaN NaN NaN NaN 68.583 1 72.035 71.535 72.535 3.4517 0 0 0 0.39819 1 15847 15847 8.5933 0 1 2275 11475 1423 1426 2899 2899 0.03461451538362326 CIWMKAIL 8 Unmodified _CIWMKAIL_ 0 0 0 L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 489.26806640625 2 489.269184 976.523815 NaN NaN NaN NaN NaN NaN NaN 68.213 1 71.722 71.222 72.222 3.5094 0 0 0 0.39819 1 15627 15627 8.5933 0 1 2276 11475 1423 1426 2900 2900 0.03461451538362326 CIWMKAIL 8 Unmodified _CIWMKAIL_ 0 0 0 L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense L1MC4_dup24621|chr22:23265627-23266081:-|1.1294905670796984|0.0566374541282012|4.32|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 489.2693176269531 2 489.269184 976.523815 NaN NaN NaN NaN NaN NaN NaN 68.31 1 71.819 71.319 72.319 3.5094 0 0 0 0.36705 1 15656 15656 18.135 4.6271 1 2277 11475 1423 1426 2901 2901 0.03461451538362326 CIWPRSLVR 9 Unmodified _CIWPRSLVR_ 0 0 0 REV__nc|ENSG00000228459|A6NGU7-2|LINC01546 REV__nc|ENSG00000228459|A6NGU7-2|LINC01546 MSMS UPN48_class_I_Rep_2 6 565.3208618164062 2 565.318586 1128.62262 NaN NaN NaN NaN NaN NaN NaN 33.969 1 37.63 37.13 38.13 3.6607 0 0 0 0.40038 1 5421 5421 0.6015 0.076735 1 + 2278 32108 1424 1427 2902 2902 0.06345190827619263 CIYTWLVW 8 Unmodified _CIYTWLVW_ 0 0 0 LTR9B_dup391|chrX:74259928-74260438:+|1.166756520102404|0.0370764807359874|4.98|151.0|4|1|sense LTR9B_dup391|chrX:74259928-74260438:+|1.166756520102404|0.0370764807359874|4.98|151.0|4|1|sense LTR9B_dup391|chrX:74259928-74260438:+|1.166756520102404|0.0370764807359874|4.98|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 542.2725830078125 2 542.270238 1082.52592 NaN NaN NaN NaN NaN NaN NaN 89.723 1 93.349 92.849 93.849 3.6255 0 0 0 0.40738 1 21556 21556 0.79363 0 1 2279 15731 1425 1428 2903 2903 -0.012037964521596223 CKCHHEMCDF 10 Unmodified _CKCHHEMCDF_ 0 0 0 ENSG00000183054.11,RGPD6,chr2,-,I5.1,110563334,110566951|24|3.9|1|intron;ENSG00000169629.12,RGPD8,chr2,-,I5.1,112417915,112421535|23|4.55|1|intron ENSG00000183054.11,RGPD6,chr2,-,I5.1,110563334,110566951|24|3.9|1|intron ENSG00000183054.11,RGPD6,chr2,-,I5.1,110563334,110566951|24|3.9|1|intron MSMS UPN47_class_I_Rep_3 4 626.7228393554688 2 626.721946 1251.42934 NaN NaN NaN NaN NaN NaN NaN 20.798 1 24.148 23.648 24.648 3.3496 0 0 0 0.53105 1 2213 2213 1.4819 0.15237 1 2280 4428 1426 1429 2904 2904 -0.1863179833758295 CKCVVNNYSA 10 Unmodified _CKCVVNNYSA_ 0 0 0 BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|35|1|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|35|1|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|35|1|sense MSMS UPN48_class_I_Rep_2 6 550.748779296875 2 550.746802 1099.47905 NaN NaN NaN NaN NaN NaN NaN 61.541 1 65.015 64.515 65.515 3.4738 0 0 0 0.53105 1 13679 13679 2.9952 0.41776 1 2281 419 1427 1430 2905 2905 -0.06671024065644815 CKFSPRNVR 9 Unmodified _CKFSPRNVR_ 0 0 0 REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|1|1|sense REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 553.7968139648438 2 553.798017 1105.58148 NaN NaN NaN NaN NaN NaN NaN 45.138 1 48.493 47.993 48.993 3.3556 0 0 0 0.39518 1 9482 9482 1.8442 0.36234 1 + 2282 27956 1428 1431 2906 2906 0.03291429788146161 CKFVTWVCCMM 11 Unmodified _CKFVTWVCCMM_ 0 0 0 L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|58|1|anti-sense L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|58|1|anti-sense L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|58|1|anti-sense MSMS UPN46_class_I_Rep_3 1 450.82952880859375 3 450.856038 1349.54628 NaN NaN NaN NaN NaN NaN NaN 18.061 1 18.061 17.561 18.561 0 0 0 0 0.38417 1 1517 1517 0.094841 0 1 2283 14079 1429 1432 2907 2907 -0.11450776442188726 CKHRRKLLTQ 10 Unmodified _CKHRRKLLTQ_ 0 0 0 REV__L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|89|2|sense REV__L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|89|2|sense MSMS UPN46_class_I_Rep_3 1 641.882568359375 2 641.879873 1281.74519 NaN NaN NaN NaN NaN NaN NaN 91.27 1 91.27 90.77 91.77 0 0 0 0 0.53105 1 22039 22039 3.2813 0.54611 1 + 2284 29013 1430 1433 2908 2908 0.11559027559064816 CKHVLIHKF 9 Unmodified _CKHVLIHKF_ 0 0 0 REV__L1MB5_dup1751|chr3:196501035-196501716:+|1.0973038585812342|0.1025123275995405|3.42|151.0|24|3|sense REV__L1MB5_dup1751|chr3:196501035-196501716:+|1.0973038585812342|0.1025123275995405|3.42|151.0|24|3|sense MSMS UPN48_class_I_Rep_2 6 562.8216552734375 2 562.823504 1123.63245 NaN NaN NaN NaN NaN NaN NaN 78.812 1 82.445 81.945 82.945 3.6331 0 0 0 0.38639 1 18702 18702 3.9444 1.8846 1 + 2285 26041 1431 1434 2909 2909 0.07558378833005008 CKIKKYLDVK 10 Unmodified _CKIKKYLDVK_ 0 0 0 REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|114|3|sense REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|114|3|sense MSMS UPN48_class_I_Rep_2 6 619.3690185546875 2 619.370484 1236.72641 NaN NaN NaN NaN NaN NaN NaN 90.09 1 93.837 93.337 94.337 3.7471 0 0 0 0.53105 1 21476 21476 1.6526 0 1 + 2286 27254 1432 1435 2910 2910 0.11752053144596175 CKINLLTD 8 Unmodified _CKINLLTD_ 0 0 0 REV__ENST00000421085.6_1_X:10205372-10205696:+|nuORF REV__ENST00000421085.6_1_X:10205372-10205696:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 460.7828674316406 2 460.249503 918.484453 0.20242 9.3166E-05 -0.83118 -0.00038255 -0.62876 -0.00028939 460.2490360298171 109.22 0.21639 112.82 112.68 112.9 3.6046 32 22 2 0 0 0 0.72333 1 26940 26940 4.756 0 1 711540 + 2287 22242 1433 1436 2911 2911 0.021950227884758533 CKKHGLRGM 9 Unmodified _CKKHGLRGM_ 0 0 0 ENST00000508455.1_1_1:1558985-1559326:+|nuORF;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2 ENST00000508455.1_1_1:1558985-1559326:+|nuORF ENST00000508455.1_1_1:1558985-1559326:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 515.2770385742188 2 515.275864 1028.53717 0.12283 6.3291E-05 1.3282 0.00068438 1.451 0.00074767 515.2765911078985 46.169 0.69579 49.413 49.196 49.891 3.2441 67 43 2 0 0 0 0.48846 1 9807 9807 1.8442 0.19162 1 99340 2288 5374 1434 1437 2912 2912 0.024047023703133164 CKKLLHMTI 9 Unmodified _CKKLLHMTI_ 0 0 0 REV__ENSG00000165078|ENST00000297770|CPA6 REV__ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS UPN47_class_I_Rep_1 2 544.326904296875 2 543.811748 1085.60894 0.0024568 1.336E-06 -1.1318 -0.00061549 -1.1294 -0.00061416 543.8110592156456 37.233 0.4893 40.903 40.68 41.169 3.6692 57 36 2 0 0 0 0.36392 1 7083 7083 10.074 1.3285 1 102200 + 2289 20101 1435 1438 2913 2913 0.06956197004160458 CKKLLHMTI 9 Unmodified _CKKLLHMTI_ 0 0 0 REV__ENSG00000165078|ENST00000297770|CPA6 REV__ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS UPN47_class_I_Rep_2 3 544.326171875 2 543.811748 1085.60894 0.01113 6.0528E-06 -0.81721 -0.00044441 -0.80608 -0.00043836 543.8112167339688 37.553 0.45539 40.952 40.759 41.214 3.3988 60 34 2 0 0 0 0.36392 1 7244 7244 10.074 4.3421 1 74486 + 2290 20101 1435 1438 2914 2914 0.06956197004160458 CKKNLEFY 8 Unmodified _CKKNLEFY_ 0 0 0 REV__L1MD_dup1781|chr3:136496203-136497558:+|2.355346299003304|0.0327637133845117|6.17|151.0|24|2|sense REV__L1MD_dup1781|chr3:136496203-136497558:+|2.355346299003304|0.0327637133845117|6.17|151.0|24|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 523.3032836914062 2 522.762778 1043.511 0.35472 0.00018544 -3.4636 -0.0018107 -3.1089 -0.0016252 522.7609512422192 79.296 0.048904 82.591 82.555 82.604 3.295 6 4 2 0 0 0 0.72333 1 19812 19812 4.3292 3.7277 1 44645 + 2291 27264 1436 1439 2915 2915 -0.009012883201648947 CKKPCCKC 8 Unmodified _CKKPCCKC_ 0 0 0 ENST00000274000.9_2_4:113189630-113189738:+|nuORF ENST00000274000.9_2_4:113189630-113189738:+|nuORF ENST00000274000.9_2_4:113189630-113189738:+|nuORF MSMS UPN46_class_I_Rep_3 1 456.7005615234375 2 456.699754 911.384956 NaN NaN NaN NaN NaN NaN NaN 117.39 1 117.39 116.89 117.89 0 0 0 0 0.40746 1 29095 29095 0.69038 0.088878 1 2292 6014 1437 1440 2916 2916 -0.07428157693118465 CKKWHKII 8 Unmodified _CKKWHKII_ 0 0 0 L1M7_dup18|chr1:35979817-35980862:-|3.4942733121722416|0.056616627297319|5.95|151.0|22|2|sense L1M7_dup18|chr1:35979817-35980862:-|3.4942733121722416|0.056616627297319|5.95|151.0|22|2|sense L1M7_dup18|chr1:35979817-35980862:-|3.4942733121722416|0.056616627297319|5.95|151.0|22|2|sense MSMS UPN47_class_I_Rep_2 3 528.3135375976562 2 528.312772 1054.61099 NaN NaN NaN NaN NaN NaN NaN 89.411 1 92.863 92.363 93.363 3.4525 0 0 0 0.40746 1 22214 22214 0.69038 0 1 2293 9232 1438 1441 2917 2917 0.08586993804283338 CKLCRPFF 8 Unmodified _CKLCRPFF_ 0 0 0 MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|97|3|anti-sense MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|97|3|anti-sense MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|97|3|anti-sense MSMS UPN46_class_I_Rep_3 1 507.2565002441406 2 507.256608 1012.49866 NaN NaN NaN NaN NaN NaN NaN 89.698 1 89.698 89.198 90.198 0 0 0 0 0.40738 1 21591 21591 0.79363 0 1 2294 16185 1439 1442 2918 2918 -0.007086032642177997 CKLTLSVVEV 10 Unmodified _CKLTLSVVEV_ 0 0 0 REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|56|3|sense REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|56|3|sense MSMS UPN46_class_I_Rep_3 1 545.8104248046875 2 545.812467 1089.61038 NaN NaN NaN NaN NaN NaN NaN 13.89 1 13.89 13.39 14.39 0 0 0 0 0.53105 1 496 496 1.3295 0.5359 1 + 2295 32672 1440 1443 2919 2919 0.06916109573921858 CKMCCCCFEC 10 Unmodified _CKMCCCCFEC_ 0 0 0 REV__L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|39|2|anti-sense REV__L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_1 2 586.6636962890625 2 586.66334 1171.31213 NaN NaN NaN NaN NaN NaN NaN 34.743 1 38.429 37.929 38.929 3.6859 0 0 0 0.53105 1 6291 6291 0 0 1 + 2296 26279 1441 1444 2920 2920 -0.2666773886471674 CKMQQKSK 8 Unmodified _CKMQQKSK_ 0 0 0 L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|160|3|anti-sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|160|3|anti-sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|160|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7547302246094 2 490.75443 979.494306 NaN NaN NaN NaN NaN NaN NaN 34.925 1 38.611 38.111 39.111 3.6859 0 0 0 0.40659 1 6345 6345 1.8442 0.36234 1 2297 11072 1442 1445 2921 2921 0.0037388752223250776 CKPWPFVI 8 Unmodified _CKPWPFVI_ 0 0 0 REV__MLT1K_dup2706|chr3:11454222-11454693:+|1.8674592738427709|0.0176009213790795|6.73|151.0|8|2|sense REV__MLT1K_dup2706|chr3:11454222-11454693:+|1.8674592738427709|0.0176009213790795|6.73|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 494.794921875 2 495.267499 988.520445 -0.26669 -0.00013208 -2.0357 -0.0010082 -2.3024 -0.0011403 495.26665657257774 35.83 0.54731 39.506 39.279 39.826 3.6762 50 37 2 0 0 0 0.72333 1 6692 6692 10.183 3.8293 1 53980 + 2298 31792 1443 1446 2922 2922 0.02572524755998984 CKRGSFCCCCC 11 Unmodified _CKRGSFCCCCC_ 0 0 0 L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|100|3|anti-sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|100|3|anti-sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|100|3|anti-sense MSMS UPN48_class_I_Rep_1 5 404.55047607421875 3 404.801827 1211.38365 NaN NaN NaN NaN NaN NaN NaN 30.655 1 34.197 33.697 34.697 3.542 0 0 0 0.38417 1 4430 4430 0.073264 0.073264 1 2299 13104 1444 1447 2923 2923 -0.21358483115818672 CKRKKKNFIP 10 Unmodified _CKRKKKNFIP_ 0 0 0 L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|32|3|sense L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|32|3|sense L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|32|3|sense MSMS UPN46_class_I_Rep_3 1 631.3805541992188 2 631.381717 1260.74888 NaN NaN NaN NaN NaN NaN NaN 37.11 1 37.11 36.61 37.61 0 0 0 0 0.53105 1 6945 6945 1.4819 0.95714 1 2300 12279 1445 1448 2924 2924 0.12893697332901866 CKRQILLL 8 Unmodified _CKRQILLL_ 0 0 0 REV__Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|26|3|sense REV__Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 493.8134765625 2 493.812605 985.610657 NaN NaN NaN NaN NaN NaN NaN 44.704 1 48.06 47.56 48.56 3.3556 0 0 0 0.40738 1 9349 9349 0.79363 0 1 + 2301 32469 1446 1449 2925 2925 0.11727574084454773 CKTKYINNY 9 Unmodified _CKTKYINNY_ 0 0 0 L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|78|3|sense L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|78|3|sense L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|78|3|sense MSMS UPN47_class_I_Rep_1 2 573.7842407226562 2 573.784241 1145.55393 NaN NaN NaN NaN NaN NaN NaN 52.727 1 56.285 55.785 56.785 3.5585 0 0 0 0.38639 1 11756 11756 3.9444 1.0552 1 2302 13412 1447 1450 2926 2926 -0.013025182627643517 CKVHNGHVAY 10 Unmodified _CKVHNGHVAY_ 0 0 0 REV__ENST00000505301.5_1_5:72848624-72850237:-|nuORF REV__ENST00000505301.5_1_5:72848624-72850237:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.2743530273438 2 564.274375 1126.5342 NaN NaN NaN NaN NaN NaN NaN 117.92 1 121.54 121.04 122.04 3.6215 0 0 0 0.53105 1 28747 28747 1.8442 0.19162 1 + 2303 20057 1448 1451 2927 2927 -0.024008494828422045 CKVKVQLNFV 10 Unmodified _CKVKVQLNFV_ 0 0 0 L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.343505859375 2 589.341726 1176.6689 0.5441 0.00032066 1.8834 0.00111 2.4275 0.0014307 589.3426837347821 87.746 0.17334 87.746 87.712 87.885 0 26 19 2 0 0 0 0.52562 1 21079 21079 8.7454 3.0136 1 419220 2304 8755 1449 1452 2928 2928 0.08763210939059718 CKVKVQLNFV 10 Unmodified _CKVKVQLNFV_ 0 0 0 L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.8453369140625 2 589.341726 1176.6689 0.54441 0.00032085 2.0631 0.0012159 2.6075 0.0015367 589.844439173203 91.482 0.12636 91.482 91.424 91.55 0 16 11 2 0 0 0 0.54822 1 22096 22096 5.7319 0.83484 1 117840 2305 8755 1449 1452 2929 2929 0.08763210939059718 CKVKVQLNFV 10 Unmodified _CKVKVQLNFV_ 0 0 0 L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_1 5 589.3431396484375 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 83.77 1 87.357 86.857 87.857 3.5871 0 0 0 0.53105 1 20041 20041 5.7319 0.43497 1 2306 8755 1449 1452 2930 2930 0.08763210939059718 CKVKVQLNFV 10 Unmodified _CKVKVQLNFV_ 0 0 0 L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense L1M3_dup2330|chr6:110880217-110880662:-|1.170545357698228|0.1311261221981881|3.16|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_1 5 589.3436279296875 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 84.995 1 88.601 88.101 89.101 3.6059 0 0 0 0.53105 1 20334 20334 8.7454 3.8484 1 2307 8755 1449 1452 2931 2931 0.08763210939059718 CKWLRFYV 8 Unmodified _CKWLRFYV_ 0 0 0 REV__HSMAR1_dup372|chr9:5888297-5889504:+|1.068494137630593|0.1086367997346823|3.3|151.0|27|3|sense REV__HSMAR1_dup372|chr9:5888297-5889504:+|1.068494137630593|0.1086367997346823|3.3|151.0|27|3|sense MSMS UPN48_class_I_Rep_2 6 557.797119140625 2 557.796955 1113.57936 NaN NaN NaN NaN NaN NaN NaN 57.984 1 61.499 60.999 61.999 3.5142 0 0 0 0.40604 1 12589 12589 2.5775 0.27475 1 + 2308 23957 1450 1453 2932 2932 0.02711001050329287 CKWWCNILA 9 Unmodified _CKWWCNILA_ 0 0 0 REV__L1MB4_dup624|chr2:20259292-20260256:-|2.053686455050721|0.3513952526040576|2.55|151.0|23|2|sense REV__L1MB4_dup624|chr2:20259292-20260256:-|2.053686455050721|0.3513952526040576|2.55|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 568.7739868164062 2 568.772622 1135.53069 NaN NaN NaN NaN NaN NaN NaN 15.132 1 18.785 18.285 19.285 3.6535 0 0 0 0.4007 1 573 573 0.52476 0 1 + 2309 25993 1451 1454 2933 2933 -0.03165235581059278 CKYFPWKL 8 Unmodified _CKYFPWKL_ 0 0 0 REV__L1ME2_dup7907|chr10:21773141-21773834:-|1.0585906559161524|0.0224150948028564|5.56|151.0|54|3|anti-sense REV__L1ME2_dup7907|chr10:21773141-21773834:-|1.0585906559161524|0.0224150948028564|5.56|151.0|54|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.7861328125 2 542.786056 1083.55756 0.050584 2.7456E-05 -3.0724 -0.0016676 -3.0218 -0.0016402 542.7851542520019 42.103 0.39846 45.782 45.63 46.028 3.6792 51 26 3 0 0 0 0.82752 1 8548 8548 8.5933 1.8701 1 62345 + 2310 27888 1452 1455 2934 2934 0.019121963017823873 CLALLWFRC 9 Unmodified _CLALLWFRC_ 0 0 0 REV__L1PA3_dup6317|chrX:46655358-46661385:+|2.828186986300199|0.2030807710624546|3.8|151.0|303|3|anti-sense REV__L1PA3_dup6317|chrX:46655358-46661385:+|2.828186986300199|0.2030807710624546|3.8|151.0|303|3|anti-sense MSMS UPN48_class_I_Rep_3 7 562.7921752929688 2 562.790815 1123.56708 NaN NaN NaN NaN NaN NaN NaN 73.686 1 77.237 76.737 77.737 3.5505 0 0 0 0.35339 1 17252 17252 7.9102 0 1 + 2311 28837 1453 1456 2935 2935 0.010236413156462731 CLCCIPAS 8 Unmodified _CLCCIPAS_ 0 0 0 REV__L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|124|3|anti-sense REV__L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|124|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 405.8499755859375 2 405.171353 808.328152 -0.36556 -0.00014812 1.169 0.00047365 0.80344 0.00032553 405.1719075768978 22.363 0.18679 22.363 22.307 22.493 0 22 17 2 0 0 0 0.72333 1 2640 2640 2.5775 0.27475 1 21542 + 2312 30727 1454 1457 2936 2936 -0.08367881977983416 CLDIILLKFK 10 Unmodified _CLDIILLKFK_ 0 0 0 REV__Tigger2_dup291|chr2:26121483-26122346:+|3.729557940134104|0.3347439944252353|3.48|151.0|36|1|anti-sense REV__Tigger2_dup291|chr2:26121483-26122346:+|3.729557940134104|0.3347439944252353|3.48|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_3 7 603.3683471679688 2 603.369952 1204.72535 NaN NaN NaN NaN NaN NaN NaN 72.935 1 76.472 75.972 76.972 3.5373 0 0 0 0.53105 1 17036 17036 0.40072 0 1 + 2313 32665 1455 1458 2937 2937 0.13117838775701784 CLDIKNLT 8 Unmodified _CLDIKNLT_ 0 0 0 REV__MSTA-int_dup854|chr4:168380654-168381319:+|1.7451236518789943|0.2848679944622504|2.61|150.0|27|1|anti-sense REV__MSTA-int_dup854|chr4:168380654-168381319:+|1.7451236518789943|0.2848679944622504|2.61|150.0|27|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 460.782470703125 2 460.249503 918.484453 0.18443 8.4882E-05 -0.58285 -0.00026826 -0.39842 -0.00018337 460.2491976209718 109.22 0.12837 112.89 112.8 112.93 3.6751 27 17 2 0 0 0 0.72333 1 25930 25930 2.0598 0 1 1254400 + 2314 31881 1456 1459 2938 2938 0.021950227884758533 CLELLRRYL 9 Unmodified _CLELLRRYL_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN46_class_I_Rep_3 1 589.8399047851562 2 589.839351 1177.66415 NaN NaN NaN NaN NaN NaN NaN 101.86 1 101.86 101.36 102.36 0 0 0 0 0.4007 1 24856 24856 0.52476 0 1 2315 5535 1457 1460 2939 2939 0.08242326796312227 CLFCHCFCCC 10 Unmodified _CLFCHCFCCC_ 0 0 0 L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|226|2|anti-sense L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|226|2|anti-sense L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|226|2|anti-sense MSMS UPN47_class_I_Rep_2 3 590.764404296875 2 591.180014 1180.34548 NaN NaN NaN NaN NaN NaN NaN 22.438 1 25.883 25.383 26.383 3.4447 0 0 0 0.53105 1 2664 2664 0 0 1 2316 14685 1458 1461 2940 2940 -0.23748369030499816 CLFFLLAF 8 Unmodified _CLFFLLAF_ 0 0 0 L1MEg_dup12941|chr17:20249444-20250330:+|1.2221356082107346|0.0261077451770511|5.55|151.0|41|1|anti-sense L1MEg_dup12941|chr17:20249444-20250330:+|1.2221356082107346|0.0261077451770511|5.55|151.0|41|1|anti-sense L1MEg_dup12941|chr17:20249444-20250330:+|1.2221356082107346|0.0261077451770511|5.55|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.2646484375 2 487.264425 972.514297 NaN NaN NaN NaN NaN NaN NaN 74.477 1 78.027 77.527 78.527 3.5505 0 0 0 0.40581 1 17448 17448 2.8892 0 1 2317 13364 1459 1462 2941 2941 0.02694006524507131 CLFFYCSQLAS 11 Unmodified _CLFFYCSQLAS_ 0 0 0 REV__L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|81|1|anti-sense REV__L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|81|1|anti-sense MSMS UPN48_class_I_Rep_3 7 641.2897338867188 2 641.28576 1280.55697 NaN NaN NaN NaN NaN NaN NaN 37.443 1 41.106 40.606 41.606 3.663 0 0 0 0.38417 1 6313 6313 2.7352 0.89096 1 + 2318 26936 1460 1463 2942 2942 -0.07209011200234272 CLFIRLDHF 9 Unmodified _CLFIRLDHF_ 0 0 0 L1MEf_dup5760|chr8:47810524-47811612:+|1.274458578134544|0.023968490084895|5.73|150.0|71|3|anti-sense L1MEf_dup5760|chr8:47810524-47811612:+|1.274458578134544|0.023968490084895|5.73|150.0|71|3|anti-sense L1MEf_dup5760|chr8:47810524-47811612:+|1.274458578134544|0.023968490084895|5.73|150.0|71|3|anti-sense MSMS UPN48_class_I_Rep_1 5 582.3046264648438 2 582.305144 1162.59573 NaN NaN NaN NaN NaN NaN NaN 101.79 1 105.4 104.9 105.9 3.612 0 0 0 0.39428 1 24563 24563 2.0598 0 1 2319 13299 1461 1464 2943 2943 0.020940822164220663 CLFLCSCCCCC 11 Unmodified _CLFLCSCCCCC_ 0 0 0 REV__L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|100|3|anti-sense REV__L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|100|3|anti-sense MSMS UPN48_class_I_Rep_1 5 600.678955078125 2 600.67899 1199.34343 NaN NaN NaN NaN NaN NaN NaN 68.307 1 71.759 71.259 72.259 3.4517 0 0 0 0.38417 1 15763 15763 0.35063 0.35063 1 + 2320 28454 1462 1465 2944 2944 -0.24827165830606646 CLFMPFVLF 9 Unmodified _CLFMPFVLF_ 0 0 0 L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|123|1|anti-sense L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|123|1|anti-sense L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|123|1|anti-sense MSMS UPN48_class_I_Rep_1 5 558.78369140625 2 558.784667 1115.55478 NaN NaN NaN NaN NaN NaN NaN 92.404 1 96.03 95.53 96.53 3.626 0 0 0 0.051022 1 22205 22205 36.466 2.3637 1 2321 13734 1463 1466 2945 2945 0.001626048526077284 CLHECCCYEYY 11 Unmodified _CLHECCCYEYY_ 0 0 0 REV__L1MB7_dup3198|chr2:173952355-173953071:+|2.015067731153146|0.05602779093631|5.17|151.0|47|3|anti-sense REV__L1MB7_dup3198|chr2:173952355-173953071:+|2.015067731153146|0.05602779093631|5.17|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_3 4 476.8282775878906 3 476.829093 1427.46545 NaN NaN NaN NaN NaN NaN NaN 109.04 1 112.58 112.08 113.08 3.5382 0 0 0 0.38417 1 26766 26766 0.094841 0.094841 1 + 2322 26252 1464 1467 2946 2946 -0.23118385951374876 CLHEEGGLCHA 11 Unmodified _CLHEEGGLCHA_ 0 0 0 REV__SVA_A_dup680|chr11:72909040-72910840:+|3.0207801466806816|0.059855147212369|5.66|151.0|46|3|sense REV__SVA_A_dup680|chr11:72909040-72910840:+|3.0207801466806816|0.059855147212369|5.66|151.0|46|3|sense MSMS UPN47_class_I_Rep_2 3 584.7489013671875 2 584.747333 1167.48011 NaN NaN NaN NaN NaN NaN NaN 48.952 1 52.299 51.799 52.799 3.3465 0 0 0 0.38417 1 10629 10629 1.4819 0.68827 1 + 2323 32185 1465 1468 2947 2947 -0.0969280969668489 CLHFFLIIN 9 Unmodified _CLHFFLIIN_ 0 0 0 REV__L1MB3_dup6982|chr7:128545440-128545845:-|1.310867668897348|0.0064145404898643|7.67|151.0|21|2|anti-sense REV__L1MB3_dup6982|chr7:128545440-128545845:-|1.310867668897348|0.0064145404898643|7.67|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 560.3065185546875 2 560.304613 1118.59467 NaN NaN NaN NaN NaN NaN NaN 82.062 1 85.731 85.231 86.231 3.669 0 0 0 0.35339 1 19489 19489 7.9102 0 1 + 2324 25909 1466 1469 2948 2948 0.04011867847566464 CLHHLGGMI 9 Unmodified _CLHHLGGMI_ 0 0 0 LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|32|2|sense LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|32|2|sense LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 490.75067138671875 2 490.743865 979.473177 NaN NaN NaN NaN NaN NaN NaN 25.093 1 28.842 28.342 29.342 3.7495 0 0 0 0.381 1 3387 3387 5.2307 2.3415 1 2325 15666 1467 1470 2949 2949 -0.017380777866264907 CLHIKYKS 8 Unmodified _CLHIKYKS_ 0 0 0 REV__Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|19|2|anti-sense REV__Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_3 7 496.27154541015625 2 496.273312 990.532072 NaN NaN NaN NaN NaN NaN NaN 48.958 1 52.588 52.088 53.088 3.6291 0 0 0 0.3903 1 9777 9777 11.64 0 1 + 2326 32797 1468 1471 2950 2950 0.03642721779340263 CLHVEFLLF 9 Unmodified _CLHVEFLLF_ 0 0 0 L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|56|1|anti-sense L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|56|1|anti-sense L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|56|1|anti-sense MSMS UPN47_class_I_Rep_1 2 560.7977905273438 2 560.79662 1119.57869 NaN NaN NaN NaN NaN NaN NaN 67.559 1 70.92 70.42 71.42 3.3611 0 0 0 0.39428 1 16253 16253 2.0598 1.2661 1 2327 9224 1469 1472 2951 2951 0.02368161610615971 CLHVEFLLF 9 Unmodified _CLHVEFLLF_ 0 0 0 L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|56|1|anti-sense L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|56|1|anti-sense L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|56|1|anti-sense MSMS UPN47_class_I_Rep_2 3 561.2597045898438 2 560.79662 1119.57869 NaN NaN NaN NaN NaN NaN NaN 72.211 1 75.501 75.001 76.001 3.2899 0 0 0 0.39428 1 17690 17690 2.0598 1.2661 1 2328 9224 1469 1472 2952 2952 0.02368161610615971 CLIALPRTSN 10 Unmodified _CLIALPRTSN_ 0 0 0 L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|91|2|anti-sense;L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|165|1|anti-sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|190|1|anti-sense L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|91|2|anti-sense L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|91|2|anti-sense MSMS UPN47_class_I_Rep_2 3 544.2999877929688 2 544.300059 1086.58556 NaN NaN NaN NaN NaN NaN NaN 29.534 1 33.027 32.527 33.527 3.4923 0 0 0 0.53105 1 4744 4744 1.4819 0.15237 1 2329 14356 1470 1473 2953 2953 0.04573474491212437 CLIGFLNHLY 10 Unmodified _CLIGFLNHLY_ 0 0 0 REV__L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|33|1|anti-sense REV__L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 596.2879028320312 2 596.812802 1191.61105 0.23653 0.00014116 1.8612 0.0011108 2.0978 0.001252 596.8137661232431 49.473 0.61448 53.132 52.888 53.503 3.6592 53 40 2 0 0 0 0.84575 1 10809 10809 10.824 0.024421 1 78028 + 2330 26755 1471 1474 2954 2954 0.022909490136271415 CLKDKFLPE 9 Unmodified _CLKDKFLPE_ 0 0 0 L1ME3G_dup14828|chr17:58289882-58290623:+|2.9778578145397923|0.0016212500634229|10.84|148.0|35|2|anti-sense L1ME3G_dup14828|chr17:58289882-58290623:+|2.9778578145397923|0.0016212500634229|10.84|148.0|35|2|anti-sense L1ME3G_dup14828|chr17:58289882-58290623:+|2.9778578145397923|0.0016212500634229|10.84|148.0|35|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.790771484375 2 546.791535 1091.56852 NaN NaN NaN NaN NaN NaN NaN 51.132 1 54.725 54.225 55.225 3.5932 0 0 0 0.39518 1 11272 11272 1.8442 0 1 2331 12831 1472 1475 2955 2955 0.026395538853876133 CLKKKQMKRF 10 Unmodified _CLKKKQMKRF_ 0 0 0 REV__L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|22|2|sense REV__L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|22|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 437.2574768066406 3 437.258027 1308.75225 0.15222 6.6558E-05 -1.6022 -0.00070058 -1.45 -0.00063402 437.25733545975004 94.91 0.13979 94.91 94.848 94.988 0 16 13 2 0 0 0 0.56433 1 23032 23032 0.77653 0.078866 1 313040 + 2332 29103 1473 1476 2956 2956 0.11022624115253166 CLKKKQMKRF 10 Unmodified _CLKKKQMKRF_ 0 0 0 REV__L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|22|2|sense REV__L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.25830078125 3 437.258027 1308.75225 -0.046612 -2.0381E-05 -1.3729 -0.00060032 -1.4195 -0.0006207 437.2575887396637 100.53 0.18826 104.14 104 104.19 3.6084 44 25 3 0 0 0 0.56433 1 24286 24286 0.77653 0.078866 1 138920 + 2333 29103 1473 1476 2957 2957 0.11022624115253166 CLLARVANNR 10 Unmodified _CLLARVANNR_ 0 0 0 REV__L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|68|2|anti-sense REV__L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|68|2|anti-sense MSMS UPN46_class_I_Rep_3 1 565.3256225585938 2 565.316574 1128.6186 NaN NaN NaN NaN NaN NaN NaN 28.59 1 28.59 28.09 29.09 0 0 0 0 0.53105 1 4410 4410 10.074 0.6908 1 + 2334 28050 1474 1477 2958 2958 0.05943101333900813 CLLFCPFAPF 10 Unmodified _CLLFCPFAPF_ 0 0 0 ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF MSMS UPN48_class_I_Rep_1 5 579.2807006835938 2 579.279749 1156.54494 NaN NaN NaN NaN NaN NaN NaN 69.365 1 72.82 72.32 73.32 3.4548 0 0 0 0.53105 1 16087 16087 12.532 4.6214 1 2335 6491 1475 1478 2959 2959 -0.02706583152780695 CLLFCPFAPF 10 Unmodified _CLLFCPFAPF_ 0 0 0 ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF MSMS UPN48_class_I_Rep_1 5 579.2796020507812 2 579.279749 1156.54494 NaN NaN NaN NaN NaN NaN NaN 69.501 1 72.956 72.456 73.456 3.4548 0 0 0 0.53105 1 16128 16128 7.9102 3.1541 1 2336 6491 1475 1478 2960 2960 -0.02706583152780695 CLLFCPFAPF 10 Unmodified _CLLFCPFAPF_ 0 0 0 ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 579.2789306640625 2 579.279749 1156.54494 0.47953 0.00027778 -0.53071 -0.00030743 -0.05118 -2.9647E-05 579.2793454209086 69.194 0.35367 72.716 72.602 72.956 3.5216 46 29 2 0 0 0 0.49259 2 16043 16043;16051 12.532 4.6214 1 198420 2337 6491 1475 1478 2961;2962 2961 -0.02706583152780695 CLLFCPFAPF 10 Unmodified _CLLFCPFAPF_ 0 0 0 ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF ENST00000380834.6_1_2:25043218-25043341:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 579.7828369140625 2 579.279749 1156.54494 0.54637 0.0003165 -0.65704 -0.00038061 -0.11067 -6.4111E-05 579.7810672104632 69.225 0.52989 72.737 72.365 72.895 3.5111 62 38 2 0 0 0 0.49259 2 15930 15930;15943 12.532 4.6214 1 231560 2338 6491 1475 1478 2963;2964 2963 -0.02706583152780695 CLLHYPCC 8 Unmodified _CLLHYPCC_ 0 0 0 PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|15|3|sense PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|15|3|sense PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 476.1988220214844 2 476.197902 950.38125 NaN NaN NaN NaN NaN NaN NaN 26.378 1 30.14 29.64 30.64 3.7624 0 0 0 0.40738 1 3764 3764 0.79363 0 1 2339 16896 1476 1479 2965 2965 -0.09592504195325091 CLLLATFPFKL 11 Unmodified _CLLLATFPFKL_ 0 0 0 REV__HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|65|2|anti-sense REV__HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|65|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 633.3785400390625 2 633.369952 1264.72535 0.43795 0.00027739 -1.8403 -0.0011656 -1.4023 -0.0008882 633.368202612984 89.498 0.3197 93.123 93.084 93.404 3.6255 43 33 2 0 0 0 0.64955 1 21493 21493 3.2813 1.7994 1 240710 + 2340 23961 1477 1480 2966 2966 0.1035783877571248 CLLLIKWKW 9 Unmodified _CLLLIKWKW_ 0 0 0 Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|42|1|anti-sense Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|42|1|anti-sense Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_2 3 601.8580322265625 2 601.859555 1201.70456 NaN NaN NaN NaN NaN NaN NaN 95.444 1 98.919 98.419 99.419 3.4753 0 0 0 0.40038 1 23488 23488 0.6015 0 1 2341 33304 1478 1481 2967 2967 0.11177293186710813 CLLLQLNFV 9 Unmodified _CLLLQLNFV_ 0 0 0 REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|79|1|anti-sense REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|79|1|anti-sense MSMS UPN48_class_I_Rep_3 7 531.81689453125 2 531.804445 1061.59434 NaN NaN NaN NaN NaN NaN NaN 90.387 1 94.234 93.734 94.734 3.847 0 0 0 0.39428 1 21453 21453 2.0598 0.21551 1 + 2342 25918 1479 1482 2968 2968 0.06600448127665004 CLLQFQPL 8 Unmodified _CLLQFQPL_ 0 0 0 REV__L1ME2_dup2860|chr3:114657371-114657823:-|1.302850032778236|0.0505536432263531|4.69|151.0|20|1|anti-sense REV__L1ME2_dup2860|chr3:114657371-114657823:-|1.302850032778236|0.0505536432263531|4.69|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 481.2625427246094 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 51.17 1 54.386 53.886 54.886 3.2163 0 0 0 0.40581 1 11365 11365 2.8892 0 1 + 2343 27852 1480 1483 2969 2969 0.02843917030781995 CLLRFERSADS 11 Unmodified _CLLRFERSADS_ 0 0 0 REV__ENSG00000186666|ENST00000333924|BCDIN3D REV__ENSG00000186666|ENST00000333924|BCDIN3D MSMS UPN47_class_I_Rep_1 2 432.8851623535156 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 99.836 1 103.63 103.13 104.13 3.7942 0 0 0 0.38417 1 24685 24685 2.084 0.62885 1 + 2344 20900 1481 1484 2970 2970 -0.006769608023205365 CLLSFLKTNA 10 Unmodified _CLLSFLKTNA_ 0 0 0 REV__L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|140|1|anti-sense REV__L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|140|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.3035888671875 2 555.30481 1108.59507 NaN NaN NaN NaN NaN NaN NaN 59.309 1 62.796 62.296 63.296 3.4868 0 0 0 0.53105 1 12998 12998 5.7319 2.1354 1 + 2345 25005 1482 1485 2971 2971 0.045112427767662666 CLMFDIRK 8 Unmodified _CLMFDIRK_ 0 0 0 REV__L1MB7_dup10662|chr9:33968686-33969244:-|1.0787004660133108|0.0208680420008259|5.69|151.0|15|2|sense REV__L1MB7_dup10662|chr9:33968686-33969244:-|1.0787004660133108|0.0208680420008259|5.69|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 513.2692260742188 2 513.267173 1024.51979 NaN NaN NaN NaN NaN NaN NaN 81.97 1 85.482 84.982 85.982 3.5122 0 0 0 0.40738 1 20470 20470 0.79363 0 1 + 2346 26118 1483 1486 2972 2972 0.00851362044659254 CLMFDIRK 8 Unmodified _CLMFDIRK_ 0 0 0 REV__L1MB7_dup10662|chr9:33968686-33969244:-|1.0787004660133108|0.0208680420008259|5.69|151.0|15|2|sense REV__L1MB7_dup10662|chr9:33968686-33969244:-|1.0787004660133108|0.0208680420008259|5.69|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 513.2687377929688 2 513.267173 1024.51979 NaN NaN NaN NaN NaN NaN NaN 81.012 1 84.396 83.896 84.896 3.3839 0 0 0 0.40738 1 20172 20172 0.79363 0 1 + 2347 26118 1483 1486 2973 2973 0.00851362044659254 CLMGYIQSW 9 Unmodified _CLMGYIQSW_ 0 0 0 ENST00000558861.1_2_15:99792175-99796202:+|nuORF;ENST00000331450.9_1_15:99791827-99796202:+|nuORF ENST00000558861.1_2_15:99792175-99796202:+|nuORF ENST00000558861.1_2_15:99792175-99796202:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.7862548828125 2 550.748813 1099.48307 NaN NaN NaN NaN NaN NaN NaN 70.587 1 70.587 70.087 71.087 0 0 0 0 0.39518 1 16229 16229 1.8442 1.0506 1 2348 6188 1484 1487 2974 2974 -0.06268934571903628 CLMGYIQSW 9 Unmodified _CLMGYIQSW_ 0 0 0 ENST00000558861.1_2_15:99792175-99796202:+|nuORF;ENST00000331450.9_1_15:99791827-99796202:+|nuORF ENST00000558861.1_2_15:99792175-99796202:+|nuORF ENST00000558861.1_2_15:99792175-99796202:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.7485961914062 2 550.748813 1099.48307 NaN NaN NaN NaN NaN NaN NaN 87.445 1 87.445 86.945 87.945 0 0 0 0 0.39518 1 20951 20951 1.8442 1.0506 1 2349 6188 1484 1487 2975 2975 -0.06268934571903628 CLMRDWYL 8 Unmodified _CLMRDWYL_ 0 0 0 REV__ENST00000429139.1_1_9:127420791-127420986:+|nuORF REV__ENST00000429139.1_1_9:127420791-127420986:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.7489624023438 2 550.256805 1098.49906 NaN NaN NaN NaN NaN NaN NaN 71.42 1 71.42 70.92 71.92 0 0 0 0 0.40581 1 16451 16451 2.8892 0.82947 1 + 2350 22283 1485 1488 2976 2976 -0.046252283350213474 CLMWLTWF 8 Unmodified _CLMWLTWF_ 0 0 0 REV__L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|66|2|anti-sense REV__L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.259033203125 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 24.796 1 24.796 24.296 25.296 0 0 0 0 0.40738 1 3307 3307 0.79363 0 1 + 2351 28698 1486 1489 2977 2977 -0.042231388413256354 CLMWLTWF 8 Unmodified _CLMWLTWF_ 0 0 0 REV__L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|66|2|anti-sense REV__L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.260009765625 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 73.653 1 73.653 73.153 74.153 0 0 0 0 0.40738 1 17083 17083 0.79363 0 1 + 2352 28698 1486 1489 2978 2978 -0.042231388413256354 CLMWLTWF 8 Unmodified _CLMWLTWF_ 0 0 0 REV__L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|66|2|anti-sense REV__L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2584228515625 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 110.53 1 110.53 110.03 111.03 0 0 0 0 0.40738 1 27224 27224 0.79363 0 1 + 2353 28698 1486 1489 2979 2979 -0.042231388413256354 CLMWMVWYY 9 Unmodified _CLMWMVWYY_ 0 0 0 ENSG00000086288.12,NME8,chr7,+,I14.1,37885253,37888276|29|4.92|1|intron ENSG00000086288.12,NME8,chr7,+,I14.1,37885253,37888276|29|4.92|1|intron ENSG00000086288.12,NME8,chr7,+,I14.1,37885253,37888276|29|4.92|1|intron MSMS UPN47_class_I_Rep_2 3 647.7765502929688 2 647.776516 1293.53848 NaN NaN NaN NaN NaN NaN NaN 42.542 1 45.903 45.403 46.403 3.3611 0 0 0 0.40038 1 8686 8686 0.6015 0 1 2354 1279 1487 1490 2980 2980 -0.09654844375791072 CLNCDQNA 8 Unmodified _CLNCDQNA_ 0 0 0 MSTA-int_dup1402|chr8:60604362-60605827:+|3.501033239845388|0.1614020505981996|4.44|151.0|2|1|sense MSTA-int_dup1402|chr8:60604362-60605827:+|3.501033239845388|0.1614020505981996|4.44|151.0|2|1|sense MSTA-int_dup1402|chr8:60604362-60605827:+|3.501033239845388|0.1614020505981996|4.44|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 440.7221984863281 2 440.66802 879.321487 NaN NaN NaN NaN NaN NaN NaN 21.202 1 21.202 20.702 21.702 0 0 0 0 0.40738 1 2331 2331 0.79363 0 1 2355 16544 1488 1491 2981 2981 -0.12300103605014101 CLPEHRNY 8 Unmodified _CLPEHRNY_ 0 0 0 REV__AluJo_dup9928|chr2:127800986-127801292:+|1.056713894533613|0.0069229364288389|7.25|151.0|21|3|anti-sense REV__AluJo_dup9928|chr2:127800986-127801292:+|1.056713894533613|0.0069229364288389|7.25|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2377319335938 2 516.240001 1030.46545 NaN NaN NaN NaN NaN NaN NaN 36.082 1 39.494 38.994 39.994 3.4114 0 0 0 0.40472 1 6728 6728 4.3292 1.7518 1 + 2356 17026 1489 1492 2982 2982 -0.04856513782556249 CLPFPWTLL 9 Unmodified _CLPFPWTLL_ 0 0 0 REV__L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|52|2|anti-sense REV__L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_3 7 545.29541015625 2 545.293714 1088.57287 NaN NaN NaN NaN NaN NaN NaN 84.402 1 88.13 87.63 88.63 3.7281 0 0 0 0.28335 1 20027 20027 11.64 0 1 + 2357 26758 1490 1493 2983 2983 0.032130630989740894 CLPHVHFEH 9 Unmodified _CLPHVHFEH_ 0 0 0 REV__L1ME1_dup6711|chr3:136696696-136697019:+|1.4464392612451211|0.1084016195991535|3.74|151.0|15|2|anti-sense REV__L1ME1_dup6711|chr3:136696696-136697019:+|1.4464392612451211|0.1084016195991535|3.74|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_1 2 559.7621459960938 2 559.763643 1117.51273 NaN NaN NaN NaN NaN NaN NaN 24.761 1 28.51 28.01 29.01 3.7495 0 0 0 0.38299 1 3291 3291 4.756 1.8668 1 + 2358 27789 1491 1494 2984 2984 -0.04132234511553179 CLPHVHFEH 9 Unmodified _CLPHVHFEH_ 0 0 0 REV__L1ME1_dup6711|chr3:136696696-136697019:+|1.4464392612451211|0.1084016195991535|3.74|151.0|15|2|anti-sense REV__L1ME1_dup6711|chr3:136696696-136697019:+|1.4464392612451211|0.1084016195991535|3.74|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_3 4 559.7625732421875 2 559.763643 1117.51273 NaN NaN NaN NaN NaN NaN NaN 26.631 1 29.979 29.479 30.479 3.3478 0 0 0 0.39428 1 3925 3925 2.0598 0.57785 1 + 2359 27789 1491 1494 2985 2985 -0.04132234511553179 CLQETHLTL 9 Unmodified _CLQETHLTL_ 0 0 0 L1PBa_dup1960|chr17:47353847-47355570:-|1.5555910787548166|0.1283488001081938|3.6|151.0|14|1|sense L1PBa_dup1960|chr17:47353847-47355570:-|1.5555910787548166|0.1283488001081938|3.6|151.0|14|1|sense L1PBa_dup1960|chr17:47353847-47355570:-|1.5555910787548166|0.1283488001081938|3.6|151.0|14|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 529.251220703125 2 529.270967 1056.52738 0.36722 0.00019436 -0.88537 -0.0004686 -0.51815 -0.00027424 529.2703817282362 39.526 0.58973 43.256 42.99 43.58 3.7297 104 57 2 0 0 0 0.11884 1 7003 7003 9.3831 0 1 171850 2360 15379 1492 1495 2986 2986 0.0013779284593056218 CLQETHLTL 9 Unmodified _CLQETHLTL_ 0 0 0 L1PBa_dup1960|chr17:47353847-47355570:-|1.5555910787548166|0.1283488001081938|3.6|151.0|14|1|sense L1PBa_dup1960|chr17:47353847-47355570:-|1.5555910787548166|0.1283488001081938|3.6|151.0|14|1|sense L1PBa_dup1960|chr17:47353847-47355570:-|1.5555910787548166|0.1283488001081938|3.6|151.0|14|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 529.270967 1056.52738 0.34022 0.00018007 -0.66388 -0.00035137 -0.32366 -0.0001713 529.772142863436 39.84 0.52338 43.345 43.135 43.659 3.5048 0.046532 0.00019564 NaN 9.3831 86 51 2 NaN NaN NaN NaN 0 NaN NaN 0 149450 2361 15379 1492 1495 0.0013779284593056218 CLRLIGYY 8 Unmodified _CLRLIGYY_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MSMS UPN47_class_I_Rep_3 4 500.78790283203125 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 62.559 1 65.728 65.228 66.228 3.1698 0 0 0 0.40581 1 14840 14840 2.8892 0.31174 1 + 2362 18565 1493 1496 2987 2987 0.021393194050574493 CLRMRRRRRR 10 Unmodified _CLRMRRRRRR_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 MULTI-MSMS UPN46_class_I_Rep_3 1 486.9588317871094 3 486.957968 1457.85207 0.28563 0.00013909 1.5985 0.00077841 1.8841 0.0009175 486.9586045527073 98.304 0.093735 98.304 98.254 98.348 0 24 11 3 0 0 0 0.5652 1 23930 23930 0.15932 0.064481 1 185310 2363 616 1494 1497 2988 2988 0.1414629929242892 CLRMRRRRRR 10 Unmodified _CLRMRRRRRR_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 MULTI-MSMS UPN46_class_I_Rep_3 1 487.29364013671875 3 486.957968 1457.85207 0.28565 0.0001391 1.8681 0.0009097 2.1538 0.0010488 486.95864005223643 98.493 0.074211 98.493 98.462 98.537 0 17 7 3 0 0 0 0.5652 1 23976 23976 0.15932 0 1 548890 2364 616 1494 1497 2989 2989 0.1414629929242892 CLRMRRRRRR 10 Unmodified _CLRMRRRRRR_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 MSMS UPN46_class_I_Rep_3 1 486.9594421386719 3 486.957968 1457.85207 NaN NaN NaN NaN NaN NaN NaN 99.23 1 99.23 98.73 99.73 0 0 0 0 0.53105 1 24169 24169 0.15932 0 1 2365 616 1494 1497 2990 2990 0.1414629929242892 CLRMRRRRRR 10 Unmodified _CLRMRRRRRR_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 MSMS UPN47_class_I_Rep_3 4 486.9591369628906 3 486.957968 1457.85207 NaN NaN NaN NaN NaN NaN NaN 93.103 1 96.508 96.008 97.008 3.4052 0 0 0 0.53105 1 23224 23224 0.15932 0.01943 1 2366 616 1494 1497 2991 2991 0.1414629929242892 CLRMRRRRRR 10 Unmodified _CLRMRRRRRR_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 MSMS UPN48_class_I_Rep_1 5 486.9585876464844 3 486.957968 1457.85207 NaN NaN NaN NaN NaN NaN NaN 95.461 1 99.078 98.578 99.578 3.6167 0 0 0 0.53105 1 22991 22991 0.15932 0 1 2367 616 1494 1497 2992 2992 0.1414629929242892 CLRMRRRRRR 10 Unmodified _CLRMRRRRRR_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|1|HSP90AB1,None|1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 486.957968 1457.85207 0.28565 0.0001391 1.8681 0.0009097 2.1538 0.0010488 486.95864005223643 98.493 0.074211 98.493 98.462 98.537 0 0.027512 -0.00075582 NaN 0.15932 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 548890 2368 616 1494 1497 0.1414629929242892 CLRRCVWF 8 Unmodified _CLRRCVWF_ 0 0 0 HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|65|3|anti-sense HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|65|3|anti-sense HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 541.7713623046875 2 541.772957 1081.53136 NaN NaN NaN NaN NaN NaN NaN 21.005 1 24.412 23.912 24.912 3.4074 0 0 0 0.40604 1 2279 2279 2.5775 0.51773 1 2369 7784 1495 1498 2993 2993 -0.00614396141349971 CLRRLVPPGLW 11 Unmodified _CLRRLVPPGLW_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MULTI-MSMS UPN47_class_I_Rep_1 2 437.257568359375 3 437.256904 1308.74888 0.15189 6.6414E-05 0.86536 0.00037838 1.0172 0.0004448 437.5916359781724 101.89 0.15983 105.68 105.64 105.8 3.7888 30 21 2 0 0 0 0.68024 1 25112 25112 0.50596 0 1 172360 2370 4109 1496 1499 2994 2994 0.10685697332928612 CLRRLVPPGLW 11 Unmodified _CLRRLVPPGLW_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MULTI-MATCH UPN46_class_I_Rep_3 1 3 437.256904 1308.74888 0.15224 6.6566E-05 0.646 0.00028247 0.79824 0.00034903 437.25720612302655 105.76 0.072823 105.76 105.72 105.79 0 0.041845 -0.00021987 NaN 0.50596 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 85909 2371 4109 1496 1499 0.10685697332928612 CLRRLVPPGLW 11 Unmodified _CLRRLVPPGLW_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 437.256904 1308.74888 0.15189 6.6414E-05 0.86536 0.00037838 1.0172 0.0004448 437.5916359781724 101.89 0.15983 105.68 105.64 105.8 3.7888 -0.041845 6.7869E-05 NaN 0.50596 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 172360 2372 4109 1496 1499 0.10685697332928612 CLRVFIIHN 9 Unmodified _CLRVFIIHN_ 0 0 0 REV__L1MB4_dup4344|chr9:93100543-93101067:-|1.4020087268152015|0.0411490606061688|5.09|151.0|31|2|anti-sense REV__L1MB4_dup4344|chr9:93100543-93101067:-|1.4020087268152015|0.0411490606061688|5.09|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 557.8145751953125 2 557.813136 1113.61172 NaN NaN NaN NaN NaN NaN NaN 89.44 1 93.27 92.77 93.77 3.8293 0 0 0 0.39518 1 21232 21232 1.8442 0 1 + 2373 25975 1497 1500 2995 2995 0.05945788453345813 CLRWMRWL 8 Unmodified _CLRWMRWL_ 0 0 0 REV__L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|25|1|anti-sense REV__L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.3034057617188 2 582.301881 1162.58921 NaN NaN NaN NaN NaN NaN NaN 101.14 1 104.94 104.44 105.44 3.7942 0 0 0 0.40746 1 24966 24966 0.69038 0.088878 1 + 2374 28339 1498 1501 2996 2996 0.014418657840906235 CLSGKVQPYF 10 Unmodified _CLSGKVQPYF_ 0 0 0 L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|65|1|anti-sense L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|65|1|anti-sense L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|65|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 571.6888427734375 2 571.289159 1140.56377 0.491 0.00028051 4.463 0.0025497 4.954 0.0028302 571.291771014687 84.606 0.034119 88.356 88.333 88.367 3.7494 4 2 2 0 0 0 0.56155 1 20072 20072 2.7352 0.43246 1 56170 2375 13015 1499 1502 2997 2997 -0.0008933025735586853 CLSLPEWTTR 10 Unmodified _CLSLPEWTTR_ 0 0 0 REV__LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|5|2|sense REV__LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|5|2|sense MSMS UPN48_class_I_Rep_1 5 603.3036499023438 2 603.302798 1204.59104 NaN NaN NaN NaN NaN NaN NaN 64.549 1 68.003 67.503 68.503 3.4541 0 0 0 0.53105 1 14622 14622 4.897 0 1 + 2376 31046 1500 1503 2998 2998 -0.003068467169896394 CLSSCLEEFF 10 Unmodified _CLSSCLEEFF_ 0 0 0 L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|110|1|anti-sense L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|110|1|anti-sense L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|110|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.7530517578125 2 589.248843 1176.48313 0.50042 0.00029487 2.2756 0.0013409 2.776 0.0016358 589.7533717928518 79.933 0.052948 83.302 83.265 83.318 3.3694 7 5 2 0 0 0 0.56033 1 19918 19918 3.5965 0 1 47168 2377 15073 1501 1504 2999 2999 -0.09804979362593258 CLSSSYWF 8 Unmodified _CLSSSYWF_ 0 0 0 REV__L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|77|1|anti-sense REV__L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_3 7 496.71160888671875 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 27.569 1 31.325 30.825 31.825 3.7555 0 0 0 0.40604 1 3634 3634 2.5775 0.73324 1 + 2378 28406 1502 1505 3000 3000 -0.0850952565397165 CLSSTLAHFY 10 Unmodified _CLSSTLAHFY_ 0 0 0 REV__HERVH-int_dup3048|chr8:8169077-8171970:+|3.662929003424659|0.30259805228926|3.6|151.0|5|1|sense REV__HERVH-int_dup3048|chr8:8169077-8171970:+|3.662929003424659|0.30259805228926|3.6|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.7718505859375 2 571.270967 1140.52738 0.44053 0.00025166 -2.436 -0.0013916 -1.9955 -0.00114 571.7712935737231 67.797 0.29651 70.988 70.817 71.114 3.1914 32 24 2 0 0 0 0.55873 1 16459 16459 4.3292 1.44 1 58332 + 2379 23665 1503 1506 3001 3001 -0.03726207154068106 CLVGHYIY 8 Unmodified _CLVGHYIY_ 0 0 0 REV__L1PA13_dup6580|chr11:73024610-73025656:+|1.862596816323852|0.0099113907782149|7.55|150.0|22|2|sense REV__L1PA13_dup6580|chr11:73024610-73025656:+|1.862596816323852|0.0099113907782149|7.55|150.0|22|2|sense MSMS UPN47_class_I_Rep_1 2 484.23931884765625 2 484.238938 966.463324 NaN NaN NaN NaN NaN NaN NaN 20.328 1 23.94 23.44 24.44 3.6118 0 0 0 0.40581 1 2020 2020 2.8892 0 1 + 2380 29115 1504 1507 3002 3002 -0.021249425203677674 CLVIPCFLTNL 11 Unmodified _CLVIPCFLTNL_ 0 0 0 REV__L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|58|1|anti-sense REV__L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_3 7 618.3294067382812 2 618.32997 1234.64539 NaN NaN NaN NaN NaN NaN NaN 45.953 1 49.59 49.09 50.09 3.6369 0 0 0 0.38417 1 8856 8856 2.7352 0.23671 1 + 2381 28578 1505 1508 3003 3003 0.03745029110223186 CLVKLTTTL 9 Unmodified _CLVKLTTTL_ 0 0 0 REV__ENST00000427443.5_1_16:58550827-58552930:+|nuORF REV__ENST00000427443.5_1_16:58550827-58552930:+|nuORF MSMS UPN46_class_I_Rep_3 1 496.2944641113281 2 496.296453 990.578353 NaN NaN NaN NaN NaN NaN NaN 12.119 1 12.119 11.619 12.619 0 0 0 0 0.4007 1 29 29 0.52476 0 1 + 2382 18210 1506 1509 3004 3004 0.0826874189077671 CLWYGLLLN 9 Unmodified _CLWYGLLLN_ 0 0 0 REV__L1ME1_dup19096|chr10:14913890-14914662:+|1.11316707604896|0.0423683630615972|4.72|150.0|48|1|anti-sense REV__L1ME1_dup19096|chr10:14913890-14914662:+|1.11316707604896|0.0423683630615972|4.72|150.0|48|1|anti-sense MSMS UPN48_class_I_Rep_2 6 547.3027954101562 2 547.788795 1093.56304 NaN NaN NaN NaN NaN NaN NaN 25.991 1 29.625 29.125 30.125 3.6332 0 0 0 0.39428 1 3246 3246 2.0598 0.40713 1 + 2383 27649 1507 1510 3005 3005 0.01999875093611081 CLYKASYCK 9 Unmodified _CLYKASYCK_ 0 0 0 REV__LTR24C_dup265|chr11:14802705-14803263:-|1.5219438429102323|0.0300769039697182|5.66|151.0|4|1|sense REV__LTR24C_dup265|chr11:14802705-14803263:-|1.5219438429102323|0.0300769039697182|5.66|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 539.7548828125 2 539.756638 1077.49872 -0.15274 -8.2442E-05 -0.34015 -0.0001836 -0.49289 -0.00026604 539.7563668771576 18.572 0.21316 18.572 18.436 18.649 0 44 24 2 0 0 0 0.49026 1 1628 1628 1.6526 0 1 58336 + 2384 30883 1508 1511 3006 3006 -0.0369264805488001 CLYKCKHCEL 10 Unmodified _CLYKCKHCEL_ 0 0 0 REV__ENSG00000140832|ENST00000268485|MARVELD3 REV__ENSG00000140832|ENST00000268485|MARVELD3 MSMS UPN47_class_I_Rep_3 4 620.2888793945312 2 620.287779 1238.56101 NaN NaN NaN NaN NaN NaN NaN 51.793 1 54.999 54.499 55.499 3.2055 0 0 0 0.53105 1 11556 11556 1.4819 0.28856 1 + 2385 19359 1509 1512 3007 3007 -0.04873244978193725 CLYPYCIYEI 10 Unmodified _CLYPYCIYEI_ 0 0 0 THE1D-int_dup1885|chr11:74826505-74827592:-|2.2918475503935327|0.3452699939048546|2.73|151.0|11|1|sense THE1D-int_dup1885|chr11:74826505-74827592:-|2.2918475503935327|0.3452699939048546|2.73|151.0|11|1|sense THE1D-int_dup1885|chr11:74826505-74827592:-|2.2918475503935327|0.3452699939048546|2.73|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 640.2891235351562 2 640.290511 1278.56647 0.46931 0.00030049 -0.7683 -0.00049193 -0.29899 -0.00019144 640.2899080388039 75.668 0.67622 78.925 78.735 79.411 3.2573 112 61 3 0 0 0 0.46161 1 18908 18908 14.838 2.5976 1 258830 2386 32958 1510 1513 3008 3008 -0.061672429147392904 CMAALLIKK 9 Unmodified _CMAALLIKK_ 0 0 0 REV__nc|ENSG00000166948|O95932-2|TGM6 REV__nc|ENSG00000166948|O95932-2|TGM6 MULTI-MSMS UPN48_class_I_Rep_1 5 495.79656982421875 2 495.795566 989.576579 0.17397 8.6251E-05 -1.1171 -0.00055386 -0.94314 -0.00046761 495.795991699083 110.97 0.22694 114.6 114.51 114.74 3.6326 47 27 3 0 0 0 0.50015 1 26919 26919 0.6015 0.6015 1 73289 + 2387 20200 1511 1514 3009 3009 0.0813740960117002 CMCDWESCCE 10 Unmodified _CMCDWESCCE_ 0 0 0 REV__nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18 REV__nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18 MSMS UPN47_class_I_Rep_3 4 604.6636962890625 2 604.662905 1207.31126 NaN NaN NaN NaN NaN NaN NaN 100.14 1 103.59 103.09 104.09 3.4483 0 0 0 0.53105 1 24749 24749 0.40072 0.40072 1 + 2388 20910 1512 1515 3010 3010 -0.2841053870840824 CMCGGLVSDPL 11 Unmodified _CMCGGLVSDPL_ 0 0 0 REV__L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|155|2|anti-sense REV__L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|155|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.817138671875 2 547.737588 1093.46062 NaN NaN NaN NaN NaN NaN NaN 29.934 1 33.679 33.179 34.179 3.7449 0 0 0 0.38417 1 4824 4824 1.3295 0.5359 1 + 2389 30740 1513 1516 3011 3011 -0.08236902031853788 CMCQVCQRSD 10 Unmodified _CMCQVCQRSD_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|183|1|anti-sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|183|1|anti-sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|183|1|anti-sense MSMS UPN46_class_I_Rep_3 1 586.718505859375 2 586.719404 1171.42425 NaN NaN NaN NaN NaN NaN NaN 118.86 1 118.86 118.36 119.36 0 0 0 0 0.53105 1 29520 29520 1.4819 0.68827 1 2390 14724 1514 1517 3012 3012 -0.15460102200222536 CMDVDEAGNH 10 Unmodified _CMDVDEAGNH_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|51|1|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|51|1|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|51|1|sense MSMS UPN47_class_I_Rep_1 2 545.6993408203125 2 545.700048 1089.38554 NaN NaN NaN NaN NaN NaN NaN 116.32 1 119.93 119.43 120.43 3.6036 0 0 0 0.53105 1 28802 28802 1.3295 0.5359 1 2391 14553 1515 1518 3013 3013 -0.15557368238728486 CMEELISRM 9 Unmodified _CMEELISRM_ 0 0 0 nc|ENSG00000182508|Q86WI0-2|LHFPL1;ENSG00000182508|ENST00000371968|LHFPL1 nc|ENSG00000182508|Q86WI0-2|LHFPL1 nc|ENSG00000182508|Q86WI0-2|LHFPL1 MSMS UPN47_class_I_Rep_3 4 556.2522583007812 2 556.250862 1110.48717 NaN NaN NaN NaN NaN NaN NaN 69.392 1 72.597 72.097 73.097 3.2044 0 0 0 0.4007 1 16917 16917 0.52476 0.52476 1 2392 4956 1516 1519 3014 3014 -0.06365213140497872 CMFCGDSF 8 Unmodified _CMFCGDSF_ 0 0 0 nc|ENSG00000182463|Q9NRE2-2|TSHZ2;ENSG00000182463|ENST00000371497|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 MULTI-MSMS UPN48_class_I_Rep_1 5 455.15118408203125 2 455.150617 908.286681 0.17586 8.0041E-05 0.84578 0.00038496 1.0216 0.000465 455.1509770138764 59.749 0.47256 63.229 63.036 63.509 3.4801 47 36 2 0 0 0 0.82752 1 13122 13122 0.79363 0 1 66713 2393 4953 1517 1520 3015 3015 -0.17113062737303153 CMFIAALLTI 10 Unmodified _CMFIAALLTI_ 0 0 0 L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense;L1PA6_dup4188|chr10:72435421-72441564:+|4.028390149030293|0.0532224935036637|6.24|151.0|46|1|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 548.3009033203125 2 548.300681 1094.58681 0.46323 0.00025399 -0.31622 -0.00017338 0.14701 8.0606E-05 548.3004557620175 53.839 0.54171 57.028 56.695 57.237 3.1887 59 36 2 0 0 0 0.84575 1 12173 12173 14.838 3.198 1 126180 2394 9853 1518 1521 3016 3016 0.043299725357655916 CMFIAALLTI 10 Unmodified _CMFIAALLTI_ 0 0 0 L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense;L1PA6_dup4188|chr10:72435421-72441564:+|4.028390149030293|0.0532224935036637|6.24|151.0|46|1|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 548.300681 1094.58681 0.35166 0.00019282 -0.198 -0.00010856 0.15366 8.4253E-05 548.3005864256361 53.282 0.54437 56.809 56.626 57.17 3.5278 -0.099915 -6.5634E-05 NaN 14.838 63 36 2 NaN NaN NaN NaN 0 NaN NaN 0 135920 2395 9853 1518 1521 0.043299725357655916 CMFIAALLTI 10 Unmodified _CMFIAALLTI_ 0 0 0 L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense;L1PA6_dup4188|chr10:72435421-72441564:+|4.028390149030293|0.0532224935036637|6.24|151.0|46|1|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|36|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 548.300681 1094.58681 0.4961 0.00027201 0.099557 5.4587E-05 0.59566 0.0003266 548.3008764513088 53.564 0.5471 56.891 56.679 57.226 3.3266 -0.018663 0.00026066 NaN 14.838 60 37 2 NaN NaN NaN NaN 0 NaN NaN 0 110530 2396 9853 1518 1521 0.043299725357655916 CMFIRLAPV 9 Unmodified _CMFIRLAPV_ 0 0 0 REV__L1ME3G_dup14828|chr17:58289882-58290623:+|2.9778578145397923|0.0016212500634229|10.84|148.0|24|1|anti-sense REV__L1ME3G_dup14828|chr17:58289882-58290623:+|2.9778578145397923|0.0016212500634229|10.84|148.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 525.6686401367188 2 525.285366 1048.55618 NaN NaN NaN NaN NaN NaN NaN 64.58 1 64.58 64.08 65.08 0 0 0 0 0.39326 1 14544 14544 2.3027 0.24298 1 + 2397 28185 1519 1522 3017 3017 0.03384238941362128 CMFKLILASPS 11 Unmodified _CMFKLILASPS_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|19|2|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|19|2|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|19|2|anti-sense MSMS UPN46_class_I_Rep_3 1 605.3226928710938 2 605.322145 1208.62974 NaN NaN NaN NaN NaN NaN NaN 42.358 1 42.358 41.858 42.858 0 0 0 0 0.38417 1 8379 8379 1.3295 0.72803 1 2398 12549 1520 1523 3018 3018 0.03376742593172821 CMFTCILQLV 10 Unmodified _CMFTCILQLV_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|129|1|anti-sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|129|1|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7899169921875 2 585.789623 1169.56469 NaN NaN NaN NaN NaN NaN NaN 24.531 1 27.882 27.382 28.382 3.3509 0 0 0 0.53105 1 3307 3307 1.6526 0.69035 1 + 2399 25454 1521 1524 3019 3019 -0.013305752043152097 CMFTLFTFY 9 Unmodified _CMFTLFTFY_ 0 0 0 REV__Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|115|2|anti-sense REV__Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|115|2|anti-sense MSMS UPN48_class_I_Rep_2 6 586.7639770507812 2 586.761389 1171.50822 NaN NaN NaN NaN NaN NaN NaN 20.223 1 23.872 23.372 24.372 3.6497 0 0 0 0.39428 1 1697 1697 2.0598 0.21551 1 + 2400 32396 1522 1525 3020 3020 -0.07066879769331535 CMGVCDCCED 10 Unmodified _CMGVCDCCED_ 0 0 0 REV__ENSG00000128791|ENST00000262120|TWSG1 REV__ENSG00000128791|ENST00000262120|TWSG1 MSMS UPN48_class_I_Rep_1 5 539.1629028320312 2 539.144348 1076.27414 NaN NaN NaN NaN NaN NaN NaN 118.68 1 122.3 121.8 122.8 3.6189 0 0 0 0.53105 1 28954 28954 0 0 1 + 2401 18908 1523 1526 3021 3021 -0.26094210254177597 CMHSNIYY 8 Unmodified _CMHSNIYY_ 0 0 0 L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|148|2|anti-sense L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|148|2|anti-sense L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|148|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.7098388671875 2 515.709688 1029.40482 -0.21291 -0.0001098 -0.55189 -0.00028462 -0.7648 -0.00039442 515.7092715857206 21.512 0.6864 25.187 24.823 25.51 3.6749 138 72 2 0 0 0 0.82752 1 2270 2270 14.582 2.0501 1 114170 2402 15121 1524 1527 3022 3022 -0.10870367157144756 CMIALLLWR 9 Unmodified _CMIALLLWR_ 0 0 0 nc|ENSG00000112494|Q86WB7-2|UNC93A;ENSG00000112494|ENST00000230256|UNC93A nc|ENSG00000112494|Q86WB7-2|UNC93A nc|ENSG00000112494|Q86WB7-2|UNC93A MSMS UPN48_class_I_Rep_3 7 559.812744140625 2 559.81429 1117.61403 NaN NaN NaN NaN NaN NaN NaN 113.67 1 117.33 116.83 117.83 3.6568 0 0 0 0.39428 1 27035 27035 2.0598 1.2661 1 2403 2014 1525 1528 3023 3023 0.059925008667960356 CMKIKDEKK 9 Unmodified _CMKIKDEKK_ 0 0 0 L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|54|2|sense L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|54|2|sense L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|54|2|sense MSMS UPN46_class_I_Rep_3 1 562.0469970703125 2 561.804119 1121.59369 NaN NaN NaN NaN NaN NaN NaN 44.542 1 44.542 44.042 45.042 0 0 0 0 0.38784 1 8985 8985 3.5965 0.31518 1 2404 13039 1526 1529 3024 3024 0.03775285416304541 CMLCCCCCCCC 11 Unmodified _CMLCCCCCCCC_ 0 0 0 REV__L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|153|2|anti-sense REV__L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|153|2|anti-sense MSMS UPN47_class_I_Rep_1 2 595.1554565429688 2 595.616163 1189.21777 NaN NaN NaN NaN NaN NaN NaN 12.01 1 15.46 14.96 15.96 3.45 0 0 0 0.38417 1 3 3 0 0 1 + 2405 24986 1527 1530 3025 3025 -0.3692666027436644 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2593383789062 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 15.572 1 15.572 15.072 16.072 0 0 0 0 0.40738 1 916 916 0.79363 0 1 + 2406 28843 1528 1531 3026 3026 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.259033203125 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 16.404 1 16.404 15.904 16.904 0 0 0 0 0.40738 1 1120 1120 0.79363 0 1 + 2407 28843 1528 1531 3027 3027 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2594604492188 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 16.54 1 16.54 16.04 17.04 0 0 0 0 0.40738 1 1153 1153 0.79363 0 1 + 2408 28843 1528 1531 3028 3028 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2590942382812 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 17.839 1 17.839 17.339 18.339 0 0 0 0 0.40738 1 1468 1468 0.79363 0 1 + 2409 28843 1528 1531 3029 3029 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2591552734375 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 20.449 1 20.449 19.949 20.949 0 0 0 0 0.40738 1 2129 2129 0.79363 0 1 + 2410 28843 1528 1531 3030 3030 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2587280273438 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 23.602 1 23.602 23.102 24.102 0 0 0 0 0.40738 1 2987 2987 0.79363 0 1 + 2411 28843 1528 1531 3031 3031 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2581787109375 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 24.996 1 24.996 24.496 25.496 0 0 0 0 0.40738 1 3363 3363 0.79363 0 1 + 2412 28843 1528 1531 3032 3032 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2972412109375 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 29.187 1 29.187 28.687 29.687 0 0 0 0 0.40738 1 4586 4586 0.79363 0 1 + 2413 28843 1528 1531 3033 3033 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.291748046875 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 30.507 1 30.507 30.007 31.007 0 0 0 0 0.40738 1 4978 4978 0.79363 0 1 + 2414 28843 1528 1531 3034 3034 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2591552734375 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 30.828 1 30.828 30.328 31.328 0 0 0 0 0.40738 1 5075 5075 0.79363 0 1 + 2415 28843 1528 1531 3035 3035 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2592163085938 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 31.791 1 31.791 31.291 32.291 0 0 0 0 0.40738 1 5357 5357 0.79363 0 1 + 2416 28843 1528 1531 3036 3036 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2588500976562 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 33.498 1 33.498 32.998 33.998 0 0 0 0 0.40738 1 5867 5867 0.79363 0 1 + 2417 28843 1528 1531 3037 3037 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2574462890625 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 33.523 1 33.523 33.023 34.023 0 0 0 0 0.40738 1 5874 5874 0.79363 0 1 + 2418 28843 1528 1531 3038 3038 -0.04223138841302898 CMLFTIWW 8 Unmodified _CMLFTIWW_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|173|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2591552734375 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 95.014 1 95.014 94.514 95.514 0 0 0 0 0.40738 1 23057 23057 0.79363 0 1 + 2419 28843 1528 1531 3039 3039 -0.04223138841302898 CMLLEPLTKM 10 Unmodified _CMLLEPLTKM_ 0 0 0 L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|108|2|anti-sense L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|108|2|anti-sense L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|108|2|anti-sense MSMS UPN48_class_I_Rep_3 7 589.8009643554688 2 589.802731 1177.59091 NaN NaN NaN NaN NaN NaN NaN 70.315 1 73.834 73.334 74.334 3.5185 0 0 0 0.53105 1 16264 16264 3.5965 1.5367 1 2420 9390 1529 1532 3040 3040 0.009216939671205182 CMQPPVTYPL 10 Unmodified _CMQPPVTYPL_ 0 0 0 LTR2_dup419|chr9:62800851-62801305:+|1.64929933640941|0.4981646979306208|1.73|151.0|3|1|sense;LTR2_dup177|chr3:196057095-196057539:+|1.5185897603067295|0.3340994138221798|2.18|150.0|4|1|sense;LTR2_dup77|chr1:247132557-247133013:+|1.630919204443825|0.0757030879199882|4.43|151.0|3|1|sense;LTR2_dup115|chr2:181489841-181490300:-|1.5196228583105549|0.0345152087123198|5.46|150.0|3|1|sense LTR2_dup419|chr9:62800851-62801305:+|1.64929933640941|0.4981646979306208|1.73|151.0|3|1|sense LTR2_dup419|chr9:62800851-62801305:+|1.64929933640941|0.4981646979306208|1.73|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 574.7767333984375 2 574.77757 1147.54059 NaN NaN NaN NaN NaN NaN NaN 68.31 1 71.762 71.262 72.262 3.4517 0 0 0 0.53105 1 15764 15764 1.4819 0.15237 1 2421 15595 1530 1533 3041 3041 -0.02728092366328383 CMSEHVCMHV 10 Unmodified _CMSEHVCMHV_ 0 0 0 REV__ENST00000343380.5_1_20:32264079-32264253:-|nuORF REV__ENST00000343380.5_1_20:32264079-32264253:-|nuORF MSMS UPN46_class_I_Rep_3 1 588.2252197265625 2 588.226864 1174.43918 NaN NaN NaN NaN NaN NaN NaN 116.59 1 116.59 116.09 117.09 0 0 0 0 0.53105 1 28867 28867 1.6526 0 1 + 2422 21835 1531 1534 3042 3042 -0.1410661033219185 CMTFVMLKYF 10 Unmodified _CMTFVMLKYF_ 0 0 0 L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|172|2|anti-sense L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|172|2|anti-sense L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|172|2|anti-sense MSMS UPN47_class_I_Rep_2 3 641.8294677734375 2 641.805274 1281.59599 NaN NaN NaN NaN NaN NaN NaN 50.995 1 54.334 53.834 54.834 3.3386 0 0 0 0.53105 1 11258 11258 1.8442 0.36234 1 2423 8745 1532 1535 3043 3043 -0.03354002170226522 CMVIFIYPFT 10 Unmodified _CMVIFIYPFT_ 0 0 0 L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|151|2|anti-sense L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|151|2|anti-sense L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|151|2|anti-sense MSMS UPN48_class_I_Rep_1 5 617.3074340820312 2 617.305964 1232.59737 NaN NaN NaN NaN NaN NaN NaN 46.547 1 50.066 49.566 50.566 3.5192 0 0 0 0.53105 1 9100 9100 1.8442 0.19162 1 2424 9827 1533 1536 3044 3044 -0.009620448098303314 CMYAFCMFLC 10 Unmodified _CMYAFCMFLC_ 0 0 0 REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|38|1|anti-sense REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|38|1|anti-sense MSMS UPN46_class_I_Rep_3 1 616.2267456054688 2 616.227487 1230.44042 NaN NaN NaN NaN NaN NaN NaN 76.306 1 76.306 75.806 76.806 0 0 0 0 0.53105 1 17791 17791 0.45834 0.057624 1 + 2425 27566 1534 1537 3045 3045 -0.16558112287657423 CMYFHRSY 8 Unmodified _CMYFHRSY_ 0 0 0 REV__L1M5_dup24439|chr7:115960671-115961665:+|1.3583772034188104|0.0088638214625554|7.26|149.0|48|1|anti-sense REV__L1M5_dup24439|chr7:115960671-115961665:+|1.3583772034188104|0.0088638214625554|7.26|149.0|48|1|anti-sense MSMS UPN48_class_I_Rep_3 7 553.7290649414062 2 553.730954 1105.44736 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.25 116.75 117.75 3.6568 0 0 0 0.40625 1 27016 27016 2.3027 0.24298 1 + 2426 24644 1535 1538 3046 3046 -0.10114972028895863 CNCSCCTRY 9 Unmodified _CNCSCCTRY_ 0 0 0 ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|118|3|sense ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|118|3|sense ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|118|3|sense MSMS UPN48_class_I_Rep_1 5 526.6746826171875 2 526.674465 1051.33438 NaN NaN NaN NaN NaN NaN NaN 117.23 1 120.85 120.35 121.35 3.6215 0 0 0 0.40098 1 28565 28565 0.45834 0 1 2427 7770 1536 1539 3047 3047 -0.18923731808786215 CNGQHCCDGGN 11 Unmodified _CNGQHCCDGGN_ 0 0 0 ENST00000483778.5_1_2:242598543-242598606:+|nuORF ENST00000483778.5_1_2:242598543-242598606:+|nuORF ENST00000483778.5_1_2:242598543-242598606:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.1751098632812 2 554.173675 1106.3328 NaN NaN NaN NaN NaN NaN NaN 18.821 1 22.401 21.901 22.901 3.5806 0 0 0 0.38417 1 1638 1638 0.30703 0.30703 1 2428 7013 1537 1540 3048 3048 -0.21611649573151226 CNHLWWWEF 9 Unmodified _CNHLWWWEF_ 0 0 0 L1M4b_dup3008|chr11:681725-683200:-|1.0620558543023757|0.0907270415616075|3.55|151.0|52|1|anti-sense L1M4b_dup3008|chr11:681725-683200:-|1.0620558543023757|0.0907270415616075|3.55|151.0|52|1|anti-sense L1M4b_dup3008|chr11:681725-683200:-|1.0620558543023757|0.0907270415616075|3.55|151.0|52|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 440.799072265625 3 440.858809 1319.5546 -0.009228 -4.0682E-06 -2.2436 -0.00098913 -2.2529 -0.00099319 440.85763937192456 41.249 0.13713 44.755 44.641 44.778 3.506 14 9 2 0 0 0 0.1229 1 7482 7482 4.897 1.0207 1 68612 2429 9002 1538 1541 3049 3049 -0.09239678823041686 CNKLEKLFY 9 Unmodified _CNKLEKLFY_ 0 0 0 REV__L1M4_dup17223|chr16:10394061-10396245:+|3.107861529164368|0.0752798218370668|5.37|151.0|92|1|anti-sense REV__L1M4_dup17223|chr16:10394061-10396245:+|3.107861529164368|0.0752798218370668|5.37|151.0|92|1|anti-sense MSMS UPN47_class_I_Rep_2 3 579.2948608398438 2 579.30481 1156.59507 NaN NaN NaN NaN NaN NaN NaN 55.722 1 59.032 58.532 59.532 3.3102 0 0 0 0.15455 1 12699 12699 19.257 3.4098 1 + 2430 24391 1539 1542 3050 3050 0.023032427767020636 CNLKQLNEVF 10 Unmodified _CNLKQLNEVF_ 0 0 0 L1MA3_dup7747|chr15:55884180-55886484:+|1.105474032884794|0.0275737079209759|5.33|151.0|140|3|anti-sense L1MA3_dup7747|chr15:55884180-55886484:+|1.105474032884794|0.0275737079209759|5.33|151.0|140|3|anti-sense L1MA3_dup7747|chr15:55884180-55886484:+|1.105474032884794|0.0275737079209759|5.33|151.0|140|3|anti-sense MSMS UPN48_class_I_Rep_2 6 604.3107299804688 2 604.310623 1206.60669 NaN NaN NaN NaN NaN NaN NaN 69.374 1 72.896 72.396 73.396 3.5216 0 0 0 0.53105 1 16067 16067 5.2969 0 1 2431 9625 1540 1543 3051 3051 0.01165439800047352 CNPGPTLSTC 10 Unmodified _CNPGPTLSTC_ 0 0 0 REV__ENST00000496951.1_1_2:28117423-28152780:+|nuORF REV__ENST00000496951.1_1_2:28117423-28152780:+|nuORF MSMS UPN46_class_I_Rep_3 1 496.7213134765625 2 496.712427 991.410302 NaN NaN NaN NaN NaN NaN NaN 37.684 1 37.684 37.184 38.184 0 0 0 0 0.53105 1 7111 7111 13.042 2.2185 1 + 2432 19832 1541 1544 3052 3052 -0.08574688365342809 CNPGPTLSTC 10 Unmodified _CNPGPTLSTC_ 0 0 0 REV__ENST00000496951.1_1_2:28117423-28152780:+|nuORF REV__ENST00000496951.1_1_2:28117423-28152780:+|nuORF MSMS UPN46_class_I_Rep_3 1 496.7112121582031 2 496.712427 991.410302 NaN NaN NaN NaN NaN NaN NaN 37.759 1 37.759 37.259 38.259 0 0 0 0 0.53105 1 7133 7133 5.2969 1.7004 1 + 2433 19832 1541 1544 3053 3053 -0.08574688365342809 CNRYSHYW 8 Unmodified _CNRYSHYW_ 0 0 0 REV__L1PA14_dup664|chr3:151520505-151524783:+|2.4610899078482427|0.0817751117817116|4.91|136.0|17|1|sense REV__L1PA14_dup664|chr3:151520505-151524783:+|2.4610899078482427|0.0817751117817116|4.91|136.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 564.7377319335938 2 564.737625 1127.4607 NaN NaN NaN NaN NaN NaN NaN 114.44 1 118.03 117.53 118.53 3.5809 0 0 0 0.40746 1 28279 28279 0.69038 0 1 + 2434 29176 1542 1545 3054 3054 -0.09793397925318459 CNSYHQVTSLG 11 Unmodified _CNSYHQVTSLG_ 0 0 0 REV__ENST00000585560.5_1_19:44670865-44674197:+|nuORF REV__ENST00000585560.5_1_19:44670865-44674197:+|nuORF MSMS UPN47_class_I_Rep_2 3 604.7750244140625 2 604.771862 1207.52917 NaN NaN NaN NaN NaN NaN NaN 17.048 1 20.435 19.935 20.935 3.387 0 0 0 0.38417 1 1201 1201 0.96228 0.2719 1 + 2435 23141 1543 1546 3055 3055 -0.06629198136124614 CNYCCCTSR 9 Unmodified _CNYCCCTSR_ 0 0 0 REV__Cheshire_dup31|chr1:88884326-88885156:-|1.1836872178441429|0.0602478584802572|4.3|151.0|54|2|anti-sense REV__Cheshire_dup31|chr1:88884326-88885156:-|1.1836872178441429|0.0602478584802572|4.3|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_2 3 526.82177734375 2 526.674465 1051.33438 NaN NaN NaN NaN NaN NaN NaN 118.21 1 121.7 121.2 122.2 3.4822 0 0 0 0.40098 1 28919 28919 0.45834 0.057624 1 + 2436 17409 1544 1547 3056 3056 -0.18923731808786215 CPAQLAFPGQV 11 Unmodified _CPAQLAFPGQV_ 0 0 0 LTR27_dup93|chr17:10083432-10084060:-|1.1010899232093654|0.0029749960196403|8.53|151.0|24|2|anti-sense LTR27_dup93|chr17:10083432-10084060:-|1.1010899232093654|0.0029749960196403|8.53|151.0|24|2|anti-sense LTR27_dup93|chr17:10083432-10084060:-|1.1010899232093654|0.0029749960196403|8.53|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 565.7876586914062 2 565.786784 1129.55902 NaN NaN NaN NaN NaN NaN NaN 32.603 1 36.13 35.63 36.63 3.5266 0 0 0 0.38417 1 4977 4977 1.3295 0.5359 1 2437 15608 1545 1548 3057 3057 -0.0005821440013278334 CPARRHEWN 9 Unmodified _CPARRHEWN_ 0 0 0 REV__AluJo_dup69920|chr19:7418252-7418595:-|3.290901165254737|0.0070118759573309|8.87|151.0|21|2|anti-sense REV__AluJo_dup69920|chr19:7418252-7418595:-|3.290901165254737|0.0070118759573309|8.87|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 584.7742919921875 2 584.775074 1167.53559 NaN NaN NaN NaN NaN NaN NaN 25.361 1 29.13 28.63 29.63 3.769 0 0 0 0.39428 1 3072 3072 2.0598 1.3694 1 + 2438 17017 1546 1549 3058 3058 -0.04147215394050363 CPFQDIKIS 9 Unmodified _CPFQDIKIS_ 0 0 0 REV__MER39_dup237|chr1:246119844-246120288:-|1.3348464510809412|0.01687096805452|6.31|151.0|11|3|sense REV__MER39_dup237|chr1:246119844-246120288:-|1.3348464510809412|0.01687096805452|6.31|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 525.7705688476562 2 525.76806 1049.52157 NaN NaN NaN NaN NaN NaN NaN 51.033 1 54.249 53.749 54.749 3.2163 0 0 0 0.31276 1 11323 11323 10.074 1.3285 1 + 2439 31274 1547 1550 3059 3059 -0.001213056657661582 CPFYTDCI 8 Unmodified _CPFYTDCI_ 0 0 0 L1MC5_dup12102|chr14:93310784-93312042:-|1.394363044503548|0.0311127984471011|5.49|151.0|13|1|sense L1MC5_dup12102|chr14:93310784-93312042:-|1.394363044503548|0.0311127984471011|5.49|151.0|13|1|sense L1MC5_dup12102|chr14:93310784-93312042:-|1.394363044503548|0.0311127984471011|5.49|151.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 481.1937255859375 2 481.193339 960.372125 NaN NaN NaN NaN NaN NaN NaN 47.093 1 50.612 50.112 51.112 3.5192 0 0 0 0.40746 1 9268 9268 0.69038 0 1 2440 11662 1548 1551 3060 3060 -0.10964574280023953 CPGPGGVLRL 10 Unmodified _CPGPGGVLRL_ 0 0 0 REV__ENSG00000146700|ENST00000275560|SSC4D REV__ENSG00000146700|ENST00000275560|SSC4D MSMS UPN48_class_I_Rep_2 6 484.7730712890625 2 484.770937 967.527321 NaN NaN NaN NaN NaN NaN NaN 69.378 1 72.899 72.399 73.399 3.5216 0 0 0 0.53105 1 16068 16068 3.2813 0.39209 1 + 2441 19547 1549 1552 3061 3061 0.042258376365680306 CPHCFCNCCF 10 Unmodified _CPHCFCNCCF_ 0 0 0 REV__L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|248|3|anti-sense REV__L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|248|3|anti-sense MSMS UPN47_class_I_Rep_3 4 588.6791381835938 2 588.681236 1175.34792 NaN NaN NaN NaN NaN NaN NaN 23.632 1 26.982 26.482 27.482 3.3509 0 0 0 0.53105 1 3039 3039 0.45834 0 1 + 2442 29012 1550 1553 3062 3062 -0.23274197301202548 CPHHCCSCSH 10 Unmodified _CPHHCCSCSH_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|70|3|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_3 4 556.758056640625 2 557.177706 1112.34086 NaN NaN NaN NaN NaN NaN NaN 52.856 1 56.051 55.551 56.551 3.1948 0 0 0 0.53105 1 11875 11875 0.40072 0 1 + 2443 31409 1551 1554 3063 3063 -0.2108179385738822 CPHKKRKVP 9 Unmodified _CPHKKRKVP_ 0 0 0 MLT1C_dup1619|chr2:47870331-47870759:+|2.382445761722439|0.0091016469843106|8.03|151.0|8|2|sense MLT1C_dup1619|chr2:47870331-47870759:+|2.382445761722439|0.0091016469843106|8.03|151.0|8|2|sense MLT1C_dup1619|chr2:47870331-47870759:+|2.382445761722439|0.0091016469843106|8.03|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 546.8255004882812 2 546.826578 1091.6386 NaN NaN NaN NaN NaN NaN NaN 12.363 1 15.738 15.238 16.238 3.3753 0 0 0 0.4007 1 68 68 0.52476 0 1 2444 16303 1552 1555 3064 3064 0.09644897064526958 CPHQRRSID 9 Unmodified _CPHQRRSID_ 0 0 0 REV__ENST00000328089.10_1_1:9427712-9428249:+|nuORF REV__ENST00000328089.10_1_1:9427712-9428249:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 556.2730102539062 2 556.274906 1110.53526 0.29601 0.00016466 1.1882 0.00066099 1.4843 0.00082565 556.2743169245479 51.412 0.70706 55.005 54.738 55.445 3.5933 61 34 3 0 0 0 0.43153 1 11320 11320 6.2058 0.47393 1 125090 + 2445 21768 1553 1556 3065 3065 -0.015586351139290855 CPIKTKMYT 9 Unmodified _CPIKTKMYT_ 0 0 0 ENST00000497497.1_1_10:119013719-119036774:+|nuORF;ENSG00000165646|ENST00000644641|SLC18A2 ENST00000497497.1_1_10:119013719-119036774:+|nuORF ENST00000497497.1_1_10:119013719-119036774:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 542.780517578125 2 542.780113 1083.54567 -0.038762 -2.1039E-05 -0.93176 -0.00050574 -0.97053 -0.00052678 542.7796973597458 27.485 0.52516 31.252 30.981 31.506 3.7662 82 40 3 0 0 0 0.46869 1 4028 4028 3.9444 1.6417 1 118210 2446 4193 1554 1557 3066 3066 0.00724211496276439 CPIKVMKLY 9 Unmodified _CPIKVMKLY_ 0 0 0 REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|131|3|anti-sense REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|131|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.8093872070312 2 547.808674 1093.60279 -0.084502 -4.6291E-05 -1.1532 -0.00063171 -1.2377 -0.000678 547.8077817055034 37.315 0.75647 40.562 40.24 40.997 3.247 85 56 2 0 0 0 0.46434 1 7077 7077 4.3292 0.73274 1 99374 + 2447 27877 1555 1558 3067 3067 0.0597367877267061 CPKIHYVI 8 Unmodified _CPKIHYVI_ 0 0 0 ENSG00000206150|ENST00000382951|RNASE13 ENSG00000206150|ENST00000382951|RNASE13 ENSG00000206150|ENST00000382951|RNASE13 MSMS UPN46_class_I_Rep_3 1 486.72796630859375 2 486.770406 971.526258 NaN NaN NaN NaN NaN NaN NaN 28.128 1 28.128 27.628 28.628 0 0 0 0 0.40404 1 4276 4276 5.2307 2.6532 1 2448 5566 1556 1559 3068 3068 0.039356232676709624 CPKPKAAR 8 Unmodified _CPKPKAAR_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-2|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-SECPEP UPN46_class_I_Rep_3 1 435.2510986328125 2 435.752547 869.490542 0.14855 6.473E-05 -0.70983 -0.00030931 -0.56128 -0.00024458 435.75233013365596 87.471 0.085823 87.471 87.448 87.533 0 8 6 2 0 0 0 0.72333 1 20969 20969 0.69038 0 1 39744 2449 16742 1557 1560 3069 3069 0.050575858106640226 CPKPKAAR 8 Unmodified _CPKPKAAR_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-2|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.752547 869.490542 0.16647 7.2541E-05 -0.17271 -7.5259E-05 -0.006237 -2.7178E-06 435.75237744491284 83.54 0.15398 87.268 87.175 87.329 3.7281 -0.10121 0.00018094 NaN 0.69038 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 50770 2450 16742 1557 1560 0.050575858106640226 CPLKRKRSD 9 Unmodified _CPLKRKRSD_ 0 0 0 REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MSMS UPN47_class_I_Rep_2 3 551.7490234375 2 551.811125 1101.6077 NaN NaN NaN NaN NaN NaN NaN 66.601 1 69.859 69.359 70.359 3.2588 0 0 0 0.39326 1 16009 16009 2.3027 0 1 + 2451 18796 1558 1561 3070 3070 0.06095698959643414 CPMFMFLISL 10 Unmodified _CPMFMFLISL_ 0 0 0 REV__L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|114|3|anti-sense REV__L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|114|3|anti-sense MSMS UPN48_class_I_Rep_3 7 601.2952270507812 2 601.294542 1200.57453 NaN NaN NaN NaN NaN NaN NaN 46.343 1 49.98 49.48 50.48 3.6369 0 0 0 0.53105 1 8976 8976 1.8442 0.19162 1 + 2452 25666 1559 1562 3071 3071 -0.017733871989321415 CPMPGVYFF 9 Unmodified _CPMPGVYFF_ 0 0 0 ENSG00000186897|ENST00000334221|C1QL4 ENSG00000186897|ENST00000334221|C1QL4 ENSG00000186897|ENST00000334221|C1QL4 MSMS UPN47_class_I_Rep_3 4 530.73486328125 2 530.735174 1059.4558 NaN NaN NaN NaN NaN NaN NaN 69.904 1 73.109 72.609 73.609 3.2044 0 0 0 0.381 1 17071 17071 5.2307 0.90143 1 2453 5172 1560 1563 3072 3072 -0.07155418112301959 CPMQREII 8 Unmodified _CPMQREII_ 0 0 0 REV__ENSG00000051341|ENST00000264233|POLQ REV__ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS UPN47_class_I_Rep_1 2 495.2485046386719 2 495.24898 988.483407 -0.26812 -0.00013279 -0.40185 -0.00019902 -0.66997 -0.0003318 495.2487392208277 35.435 0.5744 39.111 38.87 39.445 3.6762 72 39 2 0 0 0 0.82752 1 6511 6511 7.2892 0.56607 1 136910 + 2454 17680 1561 1564 3073 3073 -0.011295148520616749 CPMVWPLKI 9 Unmodified _CPMVWPLKI_ 0 0 0 REV__MLT1G1_dup2515|chr11:116981084-116981621:-|1.3582266087911217|0.007339994108186|7.53|151.0|12|2|sense REV__MLT1G1_dup2515|chr11:116981084-116981621:-|1.3582266087911217|0.007339994108186|7.53|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 544.2977294921875 2 543.795566 1085.57658 0.55038 0.00029929 0.3438 0.00018696 0.89417 0.00048625 543.795666194678 60.637 1.0669 64.116 63.739 64.806 3.4785 288 96 4 0 0 0 0.33654 1 13321 13321 11.64 11.64 1 5209600 + 2455 31727 1562 1565 3074 3074 0.0372140960116667 CPMVWPLKI 9 Unmodified _CPMVWPLKI_ 0 0 0 REV__MLT1G1_dup2515|chr11:116981084-116981621:-|1.3582266087911217|0.007339994108186|7.53|151.0|12|2|sense REV__MLT1G1_dup2515|chr11:116981084-116981621:-|1.3582266087911217|0.007339994108186|7.53|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 543.795654296875 2 543.795566 1085.57658 0.49202 0.00026756 0.37287 0.00020277 0.8649 0.00047033 543.7956828423528 60.5 1.1724 64.017 63.63 64.803 3.5169 298 108 4 0 0 0 0.33654 1 13211 13211 11.64 11.64 1 4454700 + 2456 31727 1562 1565 3075 3075 0.0372140960116667 CPNCSIDQL 9 Unmodified _CPNCSIDQL_ 0 0 0 Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|3|1|sense Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|3|1|sense Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 496.7113952636719 2 496.712427 991.410302 NaN NaN NaN NaN NaN NaN NaN 113.87 1 117.53 117.03 118.03 3.663 0 0 0 0.39518 1 27191 27191 1.8442 1.0506 1 2457 33181 1563 1566 3076 3076 -0.0857468836533144 CPPRFTGSQPF 11 Unmodified _CPPRFTGSQPF_ 0 0 0 nc|ENSG00000137801|P07996-2|THBS1;ENSG00000137801|ENST00000260356|THBS1;CON__Q28194 nc|ENSG00000137801|P07996-2|THBS1 nc|ENSG00000137801|P07996-2|THBS1 MSMS UPN47_class_I_Rep_2 3 618.796142578125 2 618.79514 1235.57573 NaN NaN NaN NaN NaN NaN NaN 32.882 1 36.337 35.837 36.837 3.4547 0 0 0 0.38417 1 5755 5755 2.4985 0.43874 1 + 2458 648 1564 1567 3077 3077 -0.03263713514184019 CPQWYCLDF 9 Unmodified _CPQWYCLDF_ 0 0 0 L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|251|2|anti-sense;L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|335|3|anti-sense;L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|276|3|anti-sense L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|251|2|anti-sense L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|251|2|anti-sense MSMS UPN47_class_I_Rep_1 2 587.7374877929688 2 587.738445 1173.46234 NaN NaN NaN NaN NaN NaN NaN 16.775 1 20.297 19.797 20.797 3.5224 0 0 0 0.39518 1 1138 1138 1.8442 0.36234 1 2459 13577 1565 1568 3078 3078 -0.11745524951606967 CPQWYCLDF 9 Unmodified _CPQWYCLDF_ 0 0 0 L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|251|2|anti-sense;L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|335|3|anti-sense;L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|276|3|anti-sense L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|251|2|anti-sense L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|251|2|anti-sense MSMS UPN47_class_I_Rep_3 4 587.7384033203125 2 587.738445 1173.46234 NaN NaN NaN NaN NaN NaN NaN 16.677 1 20.039 19.539 20.539 3.3619 0 0 0 0.39518 1 1081 1081 1.8442 0 1 2460 13577 1565 1568 3079 3079 -0.11745524951606967 CPRAAAVETEK 11 Unmodified _CPRAAAVETEK_ 0 0 0 ENST00000521006.5_1_10:102729594-102732333:+|nuORF ENST00000521006.5_1_10:102729594-102732333:+|nuORF ENST00000521006.5_1_10:102729594-102732333:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 587.7996215820312 2 587.79788 1173.58121 0.39767 0.00023375 0.62634 0.00036816 1.024 0.00060191 587.7978638845743 45.174 0.6995 48.932 48.638 49.338 3.7579 75 52 2 0 0 0 0.66059 1 8775 8775 2.2828 0.63015 1 160400 2461 7228 1566 1569 3080 3080 0.0013596527762729238 CPSASVTDGRP 11 Unmodified _CPSASVTDGRP_ 0 0 0 REV__ENST00000465703.5_1_6:31928932-31929178:+|nuORF REV__ENST00000465703.5_1_6:31928932-31929178:+|nuORF MSMS UPN47_class_I_Rep_3 4 545.2538452148438 2 545.253305 1088.49206 NaN NaN NaN NaN NaN NaN NaN 31.226 1 34.525 34.025 35.025 3.2991 0 0 0 0.38417 1 5293 5293 1.0715 0.27783 1 + 2462 21189 1567 1570 3081 3081 -0.04864869681887285 CPSCNKKFLY 10 Unmodified _CPSCNKKFLY_ 0 0 0 L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense MSMS UPN47_class_I_Rep_1 2 601.775390625 2 601.788469 1201.56239 NaN NaN NaN NaN NaN NaN NaN 53.12 1 56.648 56.148 57.148 3.5278 0 0 0 0.53105 1 11875 11875 7.2892 2.0586 1 2463 8485 1568 1571 3082 3082 -0.0303328761776811 CPSCNKKFLY 10 Unmodified _CPSCNKKFLY_ 0 0 0 L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 601.7750854492188 2 601.788469 1201.56239 0.51622 0.00031066 -0.94172 -0.00056672 -0.4255 -0.00025606 601.7876474766085 52.916 0.89114 56.243 55.956 56.847 3.3266 78 57 2 0 0 0 0.55983 1 11969 11969 3.9444 0.94915 1 191300 2464 8485 1568 1571 3083 3083 -0.0303328761776811 CPSCNKKFLY 10 Unmodified _CPSCNKKFLY_ 0 0 0 L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|104|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 601.77587890625 2 601.788469 1201.56239 0.48305 0.00029069 -0.44658 -0.00026875 0.036472 2.1948E-05 601.7882334752669 53.576 0.088905 56.771 56.732 56.821 3.1948 11 7 2 0 0 0 0.55983 1 12099 12099 3.9444 0.94915 1 52268 2465 8485 1568 1571 3084 3084 -0.0303328761776811 CPSWFWDCC 9 Unmodified _CPSWFWDCC_ 0 0 0 REV__L1PREC2_dup6385|chr14:30575302-30576633:+|1.1491537652566357|0.0216889919622827|5.73|151.0|52|2|anti-sense REV__L1PREC2_dup6385|chr14:30575302-30576633:+|1.1491537652566357|0.0216889919622827|5.73|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.9697265625 2 573.695723 1145.37689 NaN NaN NaN NaN NaN NaN NaN 45.35 1 48.594 48.094 49.094 3.2441 0 0 0 0.4029 1 9600 9600 0 0 1 + 2466 30741 1569 1572 3085 3085 -0.1899801340889553 CPVPLVEELL 10 Unmodified _CPVPLVEELL_ 0 0 0 REV__L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|311|3|anti-sense REV__L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|311|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.3070678710938 2 556.307018 1110.59948 0.37359 0.00020783 -0.68047 -0.00037855 -0.30688 -0.00017072 556.3066714898927 69.367 0.22095 69.367 69.252 69.473 0 26 24 2 0 0 0 0.56033 1 15860 15860 3.5965 0.8613 1 110120 + 2467 29623 1570 1573 3086 3086 0.048607071996229934 CPVQNFQY 8 Unmodified _CPVQNFQY_ 0 0 0 L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|207|1|anti-sense;L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|323|3|anti-sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|207|1|anti-sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|207|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.27557373046875 2 499.723652 997.432752 NaN NaN NaN NaN NaN NaN NaN 66.233 1 66.233 65.733 66.733 0 0 0 0 0.40604 1 15016 15016 2.5775 0 1 2468 14811 1571 1574 3087 3087 -0.06606720905415386 CPVRRCLR 8 Unmodified _CPVRRCLR_ 0 0 0 REV__nc|ENSG00000144369|Q6P995-2|FAM171B REV__nc|ENSG00000144369|Q6P995-2|FAM171B MSMS UPN46_class_I_Rep_3 1 501.7953186035156 2 501.776031 1001.53751 NaN NaN NaN NaN NaN NaN NaN 67.042 1 67.042 66.542 67.542 0 0 0 0 0.40746 1 15242 15242 0.69038 0 1 + 2469 19482 1572 1575 3088 3088 0.0368012209016797 CPVTRWKMA 9 Unmodified _CPVTRWKMA_ 0 0 0 nc|ENSG00000212643|Q15695|ZRSR2P1;ENSG00000169249|ENST00000307771|ZRSR2 nc|ENSG00000212643|Q15695|ZRSR2P1 nc|ENSG00000212643|Q15695|ZRSR2P1 MSMS UPN47_class_I_Rep_2 3 546.2769165039062 2 546.278072 1090.54159 NaN NaN NaN NaN NaN NaN NaN 25.545 1 29.028 28.528 29.528 3.483 0 0 0 0.39428 1 3562 3562 2.0598 0.21551 1 2470 4414 1573 1576 3089 3089 -5.8332067737865145E-05 CPWFHGVR 8 Unmodified _CPWFHGVR_ 0 0 0 L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 500.7386169433594 2 501.242347 1000.47014 0.14409 7.2224E-05 -0.22099 -0.00011077 -0.076904 -3.8548E-05 501.24035473264803 20.183 0.045286 23.804 23.769 23.814 3.6215 5 4 2 0 0 0 0.72333 1 1669 1669 0.79363 0 1 17201 2471 14031 1574 1577 3090 3090 -0.030075848491264878 CPWFHGVR 8 Unmodified _CPWFHGVR_ 0 0 0 L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 501.242347 1000.47014 -0.29613 -0.00014843 5.0155 0.002514 4.7194 0.0023656 501.74614266418047 20.075 0.039034 23.686 23.669 23.708 3.6118 -0.071772 -0.00014713 NaN 0.79363 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 17353 2472 14031 1574 1577 -0.030075848491264878 CPWFHGVR 8 Unmodified _CPWFHGVR_ 0 0 0 L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 501.242347 1000.47014 -0.18669 -9.3576E-05 5.5095 0.0027616 5.3228 0.002668 501.7462447060192 20.449 0.049557 23.856 23.816 23.866 3.4074 0.098241 0.00034805 NaN 0.79363 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 50193 2473 14031 1574 1577 -0.030075848491264878 CPWFHGVR 8 Unmodified _CPWFHGVR_ 0 0 0 L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|229|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.242347 1000.47014 -0.53947 -0.00027041 6.6113 0.0033139 6.0718 0.0030435 501.2449165681389 20.336 0.07268 23.686 23.638 23.711 3.3496 -0.072413 0.0014526 NaN 0.79363 8 5 3 NaN NaN NaN NaN 0 NaN NaN 0 17041 2474 14031 1574 1577 -0.030075848491264878 CPYDDPMCACV 11 Unmodified _CPYDDPMCACV_ 0 0 0 ENST00000222990.7_1_7:2294003-2294420:-|nuORF ENST00000222990.7_1_7:2294003-2294420:-|nuORF ENST00000222990.7_1_7:2294003-2294420:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.1430358886719 3 406.142901 1215.40687 -0.4275 -0.00017363 0.65069 0.00026427 0.2232 9.0649E-05 406.47740893503874 40.779 0.36655 44.451 44.34 44.707 3.6719 47 34 2 0 0 0 0.68478 1 8118 8118 0.094841 0.094841 1 100670 2475 5874 1575 1578 3091 3091 -0.1922144252587259 CPYQPLGGSHC 11 Unmodified _CPYQPLGGSHC_ 0 0 0 ENST00000489928.1_1_14:23080555-23081103:+|nuORF ENST00000489928.1_1_14:23080555-23081103:+|nuORF ENST00000489928.1_1_14:23080555-23081103:+|nuORF MSMS UPN46_class_I_Rep_3 1 581.2933959960938 2 581.244426 1160.4743 NaN NaN NaN NaN NaN NaN NaN 29.43 1 29.43 28.93 29.93 0 0 0 0 0.38417 1 4659 4659 1.3295 0.13619 1 2476 7063 1576 1579 3092 3092 -0.09951908208358873 CQCEPGFQL 9 Unmodified _CQCEPGFQL_ 0 0 0 ENST00000527969.1_1_11:65637109-65637745:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2 ENST00000527969.1_1_11:65637109-65637745:-|nuORF ENST00000527969.1_1_11:65637109-65637745:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.7150268554688 2 512.71497 1023.41539 0.24025 0.00012318 -0.23187 -0.00011888 0.008383 4.2981E-06 512.7148955665643 72.799 0.90063 76.179 75.837 76.738 3.3799 132 65 3 0 0 0 0.15547 4 17803 17765;17803;17843;17882 24.991 9.1438 1 300920 2477 4585 1577 1580 3093;3094;3095;3096 3094 -0.09538384502707231 CQCEPGFQL 9 Unmodified _CQCEPGFQL_ 0 0 0 ENST00000527969.1_1_11:65637109-65637745:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2 ENST00000527969.1_1_11:65637109-65637745:-|nuORF ENST00000527969.1_1_11:65637109-65637745:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 512.715087890625 2 512.71497 1023.41539 0.10625 5.4477E-05 0.037029 1.8985E-05 0.14328 7.3463E-05 512.7149703653357 72.992 0.82497 76.289 75.964 76.788 3.2971 123 68 2 0 0 0 0.15547 4 17929 17855;17891;17929;17969 24.991 9.1438 1 235530 2478 4585 1577 1580 3097;3098;3099;3100 3099 -0.09538384502707231 CQCEPGFQL 9 Unmodified _CQCEPGFQL_ 0 0 0 ENST00000527969.1_1_11:65637109-65637745:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2 ENST00000527969.1_1_11:65637109-65637745:-|nuORF ENST00000527969.1_1_11:65637109-65637745:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 512.715087890625 2 512.71497 1023.41539 0.28173 0.00014445 -0.24666 -0.00012647 0.035067 1.7979E-05 512.7148712358882 73.008 0.79885 76.235 75.92 76.719 3.2271 138 71 3 0 0 0 0.057664 4 18006 17927;17966;18006;18044 45.7 17.213 1 313230 2479 4585 1577 1580 3101;3102;3103;3104 3103 -0.09538384502707231 CQCHSRRQ 8 Unmodified _CQCHSRRQ_ 0 0 0 L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.7280578613281 2 509.226902 1016.43925 0.33637 0.00017129 -0.56211 -0.00028624 -0.22575 -0.00011496 509.22660292308376 69.563 0.40065 73.076 72.936 73.336 3.5129 42 32 2 0 0 0 0.82752 1 16027 16027 0.69038 0.088878 1 74781 2480 9780 1578 1581 3105 3105 -0.06831106225683925 CQCHSRRQ 8 Unmodified _CQCHSRRQ_ 0 0 0 L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 509.226902 1016.43925 0.27084 0.00013792 -0.57084 -0.00029069 -0.3 -0.00015277 509.22643633406557 69.771 0.46861 73.23 72.961 73.429 3.4589 0.077289 -6.0414E-06 NaN 0.69038 39 34 2 NaN NaN NaN NaN 0 NaN NaN 0 71268 2481 9780 1578 1581 -0.06831106225683925 CQCHSRRQ 8 Unmodified _CQCHSRRQ_ 0 0 0 L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|79|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 509.226902 1016.43925 0.33637 0.00017129 -0.56211 -0.00028624 -0.22575 -0.00011496 509.22660292308376 69.563 0.40065 73.076 72.936 73.336 3.5129 -0.077289 2.848E-06 NaN 0.69038 42 32 2 NaN NaN NaN NaN 0 NaN NaN 0 74781 2482 9780 1578 1581 -0.06831106225683925 CQETDKTEY 9 Unmodified _CQETDKTEY_ 0 0 0 MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|38|1|anti-sense MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|38|1|anti-sense MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.7318725585938 2 558.729329 1115.4441 NaN NaN NaN NaN NaN NaN NaN 106.45 1 109.99 109.49 110.49 3.5345 0 0 0 0.38639 1 25786 25786 3.9444 0.66309 1 2483 15864 1579 1582 3106 3106 -0.10899988392588966 CQFWVFPAF 9 Unmodified _CQFWVFPAF_ 0 0 0 L1PA4_dup3721|chr5:43462828-43465964:+|1.1342541194271705|0.105818089535063|3.42|151.0|155|2|anti-sense;L1PA3_dup7470|chr10:31469211-31475223:+|2.8106536720210755|0.1884756112212745|3.9|151.0|335|3|anti-sense;L1PA3_dup1202|chr2:135413766-135418121:+|1.101996599688288|0.0305777075486076|5.17|150.0|206|2|anti-sense L1PA4_dup3721|chr5:43462828-43465964:+|1.1342541194271705|0.105818089535063|3.42|151.0|155|2|anti-sense L1PA4_dup3721|chr5:43462828-43465964:+|1.1342541194271705|0.105818089535063|3.42|151.0|155|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 572.265380859375 2 572.767863 1143.52117 0.35629 0.00020407 -1.2986 -0.00074381 -0.94233 -0.00053974 572.7671476657314 48.02 0.97471 51.369 51.24 52.215 3.3492 77 53 2 0 0 0 0.12422 1 10532 10532 2.3027 1.778 1 200430 2484 14225 1580 1583 3107 3107 -0.04484680594941892 CQGLHISKH 9 Unmodified _CQGLHISKH_ 0 0 0 MLT1A_dup5831|chr10:38025320-38025694:+|1.777789147419194|0.0719927605196717|4.63|151.0|29|3|anti-sense MLT1A_dup5831|chr10:38025320-38025694:+|1.777789147419194|0.0719927605196717|4.63|151.0|29|3|anti-sense MLT1A_dup5831|chr10:38025320-38025694:+|1.777789147419194|0.0719927605196717|4.63|151.0|29|3|anti-sense MSMS UPN47_class_I_Rep_3 4 511.28826904296875 2 511.763643 1021.51273 NaN NaN NaN NaN NaN NaN NaN 51.447 1 54.663 54.163 55.163 3.2163 0 0 0 0.39518 1 11450 11450 1.8442 1.0506 1 2485 16238 1581 1584 3108 3108 0.002837654884501717 CQHPFHWHD 9 Unmodified _CQHPFHWHD_ 0 0 0 ENST00000373053.7_2_10:74647032-74647206:+|nuORF ENST00000373053.7_2_10:74647032-74647206:+|nuORF ENST00000373053.7_2_10:74647032-74647206:+|nuORF MSMS UPN47_class_I_Rep_2 3 603.7498779296875 2 603.748524 1205.4825 NaN NaN NaN NaN NaN NaN NaN 36.239 1 39.65 39.15 40.15 3.4114 0 0 0 0.39518 1 6775 6775 1.8442 0 1 2486 6408 1582 1585 3109 3109 -0.11202593176744813 CQILKSHSDV 10 Unmodified _CQILKSHSDV_ 0 0 0 REV__ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|12|2|sense REV__ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 565.2876586914062 2 565.287148 1128.55974 0.52449 0.00029649 0.7602 0.00042973 1.2847 0.00072622 565.287379901311 64.555 0.73781 68.03 67.706 68.444 3.4743 120 55 3 0 0 0 0.55148 1 14712 14712 5.2969 1.3525 1 287490 + 2487 23242 1583 1586 3110 3110 0.0006058024891899549 CQIMWARL 8 Unmodified _CQIMWARL_ 0 0 0 REV__ENSG00000229972|ENST00000440739|IQCF3 REV__ENSG00000229972|ENST00000440739|IQCF3 MULTI-MSMS UPN48_class_I_Rep_3 7 510.7591247558594 2 510.759515 1019.50448 0.1842 9.4082E-05 -0.99716 -0.00050931 -0.81296 -0.00041523 510.7588994954384 49.904 0.6291 53.525 53.255 53.884 3.621 48 38 2 0 0 0 0.82752 1 10114 10114 4.756 0 1 144190 + 2488 21297 1584 1587 3111 3111 -0.004495047525438167 CQKGMRSGV 9 Unmodified _CQKGMRSGV_ 0 0 0 ENST00000395873.7_3_10:38145437-38146837:-|nuORF ENST00000395873.7_3_10:38145437-38146837:-|nuORF ENST00000395873.7_3_10:38145437-38146837:-|nuORF MSMS UPN48_class_I_Rep_3 7 482.9745178222656 2 483.236404 964.458255 NaN NaN NaN NaN NaN NaN NaN 51.23 1 54.84 54.34 55.34 3.6105 0 0 0 0.3967 1 10477 10477 1.4819 0.68827 1 2489 6557 1585 1588 3112 3112 -0.025395696546297586 CQKSIFCKY 9 Unmodified _CQKSIFCKY_ 0 0 0 L1MA8_dup9309|chr15:57292535-57294017:+|2.883071122075444|0.2801598532182615|3.36|151.0|66|1|anti-sense L1MA8_dup9309|chr15:57292535-57294017:+|2.883071122075444|0.2801598532182615|3.36|151.0|66|1|anti-sense L1MA8_dup9309|chr15:57292535-57294017:+|2.883071122075444|0.2801598532182615|3.36|151.0|66|1|anti-sense MSMS UPN47_class_I_Rep_1 2 560.2700805664062 2 560.269912 1118.52527 NaN NaN NaN NaN NaN NaN NaN 50.455 1 54.084 53.584 54.584 3.6285 0 0 0 0.38639 1 11065 11065 3.9444 0 1 2490 10073 1586 1589 3113 3113 -0.029249591635334582 CQQFWFLR 8 Unmodified _CQQFWFLR_ 0 0 0 ENST00000346333.10_2_11:71510876-71510927:+|nuORF;ENST00000497543.5_1_3:75471615-75471942:-|nuORF ENST00000346333.10_2_11:71510876-71510927:+|nuORF ENST00000346333.10_2_11:71510876-71510927:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.2593383789062 2 564.276386 1126.53822 NaN NaN NaN NaN NaN NaN NaN 20.238 1 23.85 23.35 24.35 3.6118 0 0 0 0.40746 1 1995 1995 0.69038 0 1 2491 6262 1587 1590 3114 3114 -0.019987599891464924 CQWILGLGFS 10 Unmodified _CQWILGLGFS_ 0 0 0 REV__L1PA4_dup5729|chr8:6651673-6655456:+|1.1465391715107949|0.0553422568890637|4.37|151.0|131|1|anti-sense REV__L1PA4_dup5729|chr8:6651673-6655456:+|1.1465391715107949|0.0553422568890637|4.37|151.0|131|1|anti-sense MSMS UPN47_class_I_Rep_2 3 562.2838745117188 2 562.283877 1122.5532 NaN NaN NaN NaN NaN NaN NaN 43.434 1 46.792 46.292 47.292 3.358 0 0 0 0.53105 1 8959 8959 1.4819 0 1 + 2492 29537 1588 1591 3115 3115 -0.00317312911784029 CRCCFGFI 8 Unmodified _CRCCFGFI_ 0 0 0 REV__L1PA7_dup5427|chr6:97155321-97159601:-|2.081530715041847|0.0676919048516874|4.94|151.0|148|1|anti-sense REV__L1PA7_dup5427|chr6:97155321-97159601:-|2.081530715041847|0.0676919048516874|4.94|151.0|148|1|anti-sense MSMS UPN46_class_I_Rep_3 1 474.6973571777344 2 474.698069 947.381585 NaN NaN NaN NaN NaN NaN NaN 100.64 1 100.64 100.14 101.14 0 0 0 0 0.40738 1 24537 24537 0.79363 0.10326 1 + 2493 30127 1589 1592 3116 3116 -0.09421084475457064 CRCRLFFG 8 Unmodified _CRCRLFFG_ 0 0 0 L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|175|1|anti-sense L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|175|1|anti-sense L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|175|1|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7659606933594 2 501.244032 1000.47351 NaN NaN NaN NaN NaN NaN NaN 22.536 1 25.886 25.386 26.386 3.3503 0 0 0 0.40604 1 2713 2713 2.5775 0 1 2494 14273 1590 1593 3117 3117 -0.026706580667791968 CRCSSMHF 8 Unmodified _CRCSSMHF_ 0 0 0 ENST00000462639.1_1_X:23803617-23803970:+|nuORF;ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF ENST00000462639.1_1_X:23803617-23803970:+|nuORF ENST00000462639.1_1_X:23803617-23803970:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 485.68798828125 2 485.688232 969.361912 0.014874 7.2241E-06 -0.59622 -0.00028958 -0.58134 -0.00028235 485.687832526834 45.348 0.54084 48.702 48.478 49.019 3.3535 46 31 2 0 0 0 0.82752 1 9531 9531 0.79363 0.10326 1 62410 2495 2639 1591 1594 3118 3118 -0.1239946048622187 CRDTTFESLT 10 Unmodified _CRDTTFESLT_ 0 0 0 L1ME3G_dup14606|chr17:30777858-30778133:+|2.598824673420119|0.1630480049983875|3.99|151.0|9|3|sense L1ME3G_dup14606|chr17:30777858-30778133:+|2.598824673420119|0.1630480049983875|3.99|151.0|9|3|sense L1ME3G_dup14606|chr17:30777858-30778133:+|2.598824673420119|0.1630480049983875|3.99|151.0|9|3|sense MSMS UPN47_class_I_Rep_3 4 586.764404296875 2 586.766245 1171.51794 NaN NaN NaN NaN NaN NaN NaN 20.481 1 23.83 23.33 24.33 3.3496 0 0 0 0.53105 1 2121 2121 1.3295 0.63916 1 2496 12829 1592 1595 3119 3119 -0.06096020230256727 CREHPHPF 8 Unmodified _CREHPHPF_ 0 0 0 ENST00000466734.5_1_3:106959599-106959797:+|nuORF ENST00000466734.5_1_3:106959599-106959797:+|nuORF ENST00000466734.5_1_3:106959599-106959797:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.78936767578125 2 511.734886 1021.45522 NaN NaN NaN NaN NaN NaN NaN 26.507 1 30.14 29.64 30.64 3.6332 0 0 0 0.40738 1 3384 3384 0.79363 0 1 2497 6904 1593 1596 3120 3120 -0.05465076717132433 CRFHTIPMK 9 Unmodified _CRFHTIPMK_ 0 0 0 L1MC3_dup7484|chrX:107080622-107082631:-|4.981860179797956|0.3514993517750268|3.83|151.0|10|1|sense L1MC3_dup7484|chrX:107080622-107082631:-|4.981860179797956|0.3514993517750268|3.83|151.0|10|1|sense L1MC3_dup7484|chrX:107080622-107082631:-|4.981860179797956|0.3514993517750268|3.83|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 566.8004150390625 2 566.791346 1131.56814 NaN NaN NaN NaN NaN NaN NaN 78.137 1 81.759 81.259 82.259 3.6222 0 0 0 0.31276 1 18532 18532 10.074 0.72649 1 2498 11367 1594 1597 3121 3121 0.0076185568455002795 CRHPWICW 8 Unmodified _CRHPWICW_ 0 0 0 REV__L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|34|3|anti-sense REV__L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|34|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.749755859375 2 550.749482 1099.48441 NaN NaN NaN NaN NaN NaN NaN 53.724 1 53.724 53.224 54.224 0 0 0 0 0.40738 1 11579 11579 0.79363 0 1 + 2499 27239 1595 1598 3122 3122 -0.06135255692515784 CRHSHNQLF 9 Unmodified _CRHSHNQLF_ 0 0 0 Tigger6a_dup146|chr3:108066307-108067364:+|2.2004465456781768|0.0957690993332495|4.52|150.0|66|2|anti-sense Tigger6a_dup146|chr3:108066307-108067364:+|2.2004465456781768|0.0957690993332495|4.52|150.0|66|2|anti-sense Tigger6a_dup146|chr3:108066307-108067364:+|2.2004465456781768|0.0957690993332495|4.52|150.0|66|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.7921752929688 2 571.269624 1140.5247 0.35407 0.00020227 -0.73431 -0.00041949 -0.38024 -0.00021722 571.7705235772968 72.758 0.038414 76.137 76.115 76.153 3.3799 5 3 2 0 0 0 0.12444 1 17819 17819 2.0598 0.21551 1 21388 2500 33441 1596 1599 3123 3123 -0.03994617768375974 CRHSLAWW 8 Unmodified _CRHSLAWW_ 0 0 0 HERVH-int_dup591|chr2:58115750-58118686:-|1.5213308184720684|0.1459881070676481|3.38|151.0|115|2|anti-sense;HERVH-int_dup5603|chr19:55009129-55012013:-|1.925840984170901|0.1754469633392039|3.46|151.0|145|3|anti-sense;HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|111|2|anti-sense;HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|115|2|anti-sense HERVH-int_dup591|chr2:58115750-58118686:-|1.5213308184720684|0.1459881070676481|3.38|151.0|115|2|anti-sense HERVH-int_dup591|chr2:58115750-58118686:-|1.5213308184720684|0.1459881070676481|3.38|151.0|115|2|anti-sense MSMS UPN46_class_I_Rep_3 1 529.741455078125 2 529.753079 1057.4916 NaN NaN NaN NaN NaN NaN NaN 15.362 1 15.362 14.862 15.862 0 0 0 0 0.40527 1 861 861 3.5965 0.8613 1 2501 8156 1597 1600 3124 3124 -0.03484199820422873 CRKMHMNVI 9 Unmodified _CRKMHMNVI_ 0 0 0 REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|22|2|sense REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.7877807617188 2 566.282831 1130.55111 0.43078 0.00024394 -0.2434 -0.00013783 0.18739 0.00010611 566.2824589685572 49.517 1.2618 53.211 52.474 53.735 3.6946 200 81 3 0 0 0 0.46869 1 9815 9815 3.9444 0 1 489200 + 2502 25984 1598 1601 3125 3125 -0.008943881928871633 CRKMHMNVI 9 Unmodified _CRKMHMNVI_ 0 0 0 REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|22|2|sense REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 566.28271484375 2 566.282831 1130.55111 0.34476 0.00019523 -0.25982 -0.00014713 0.084941 4.8101E-05 566.2824571619657 49.647 1.2475 53.276 52.561 53.808 3.6291 198 85 3 0 0 0 0.46869 1 9817 9817 3.9444 0 1 480770 + 2503 25984 1598 1601 3126 3126 -0.008943881928871633 CRKMNFVTL 9 Unmodified _CRKMNFVTL_ 0 0 0 REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|110|3|anti-sense REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|110|3|anti-sense MSMS UPN48_class_I_Rep_1 5 556.2918090820312 2 556.291179 1110.56781 NaN NaN NaN NaN NaN NaN NaN 74.164 1 77.654 77.154 78.154 3.49 0 0 0 0.38639 1 17516 17516 3.9444 0 1 + 2504 29066 1599 1602 3127 3127 0.016944359646913654 CRKMNFVTL 9 Unmodified _CRKMNFVTL_ 0 0 0 REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|110|3|anti-sense REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|110|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.2922973632812 2 556.291179 1110.56781 NaN NaN NaN NaN NaN NaN NaN 73.742 1 77.32 76.82 77.82 3.5779 0 0 0 0.37476 1 17326 17326 6.7232 0 1 + 2505 29066 1599 1602 3128 3128 0.016944359646913654 CRKPFGHFL 9 Unmodified _CRKPFGHFL_ 0 0 0 L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|8|2|sense L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|8|2|sense L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7918701171875 2 552.792204 1103.56985 0.37014 0.00020461 -1.3213 -0.00073041 -0.95117 -0.0005258 552.7915704808247 67.625 0.32158 70.986 70.827 71.149 3.3611 30 22 2 0 0 0 0.40174 1 16249 16249 7.9102 0 1 66648 2506 12512 1600 1603 3129 3129 0.022212327648276187 CRKSGSSW 8 Unmodified _CRKSGSSW_ 0 0 0 REV__LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|5|1|sense REV__LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 455.8300476074219 2 455.713619 909.412685 NaN NaN NaN NaN NaN NaN NaN 102.52 1 102.52 102.02 103.02 0 0 0 0 0.40659 1 25018 25018 1.8442 0 1 + 2507 30838 1601 1604 3130 3130 -0.04564471845355911 CRKYHWLL 8 Unmodified _CRKYHWLL_ 0 0 0 REV__L1MC3_dup9537|chr12:112495933-112496762:-|1.556507307890754|0.1145717985283733|3.76|151.0|48|2|anti-sense REV__L1MC3_dup9537|chr12:112495933-112496762:-|1.556507307890754|0.1145717985283733|3.76|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.8009033203125 2 559.800029 1117.5855 NaN NaN NaN NaN NaN NaN NaN 32.168 1 35.817 35.317 36.317 3.6497 0 0 0 0.40738 1 4937 4937 0.79363 0.10326 1 + 2508 26796 1602 1605 3131 3131 0.03141519281848559 CRLDCKFFL 9 Unmodified _CRLDCKFFL_ 0 0 0 REV__ENST00000570443.2_1_6:37475385-37503375:+|nuORF REV__ENST00000570443.2_1_6:37475385-37503375:+|nuORF MSMS UPN48_class_I_Rep_1 5 572.7838745117188 2 572.78573 1143.55691 NaN NaN NaN NaN NaN NaN NaN 56.894 1 60.388 59.888 60.888 3.4942 0 0 0 0.39428 1 12280 12280 2.0598 0.21551 1 + 2509 23088 1603 1606 3132 3132 -0.009129664096008128 CRLMFFHEI 9 Unmodified _CRLMFFHEI_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.2896118164062 2 598.291179 1194.56781 NaN NaN NaN NaN NaN NaN NaN 38.222 1 41.727 41.227 42.227 3.5052 0 0 0 0.25702 1 6594 6594 13.042 2.243 1 2510 8954 1604 1607 3133 3133 -0.02169564035307303 CRLMFFHEI 9 Unmodified _CRLMFFHEI_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.2911376953125 2 598.291179 1194.56781 NaN NaN NaN NaN NaN NaN NaN 38.275 1 41.78 41.28 42.28 3.5052 0 0 0 0.25702 1 6610 6610 13.042 2.243 1 2511 8954 1604 1607 3134 3134 -0.02169564035307303 CRLMFFHEI 9 Unmodified _CRLMFFHEI_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.2909545898438 2 598.291179 1194.56781 NaN NaN NaN NaN NaN NaN NaN 38.416 1 41.921 41.421 42.421 3.5052 0 0 0 0.37692 1 6653 6653 6.2058 0.97511 1 2512 8954 1604 1607 3135 3135 -0.02169564035307303 CRLMFFHEI 9 Unmodified _CRLMFFHEI_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.289306640625 2 598.291179 1194.56781 NaN NaN NaN NaN NaN NaN NaN 38.57 1 42.075 41.575 42.575 3.5048 0 0 0 0.37692 1 6700 6700 6.2058 0.97511 1 2513 8954 1604 1607 3136 3136 -0.02169564035307303 CRLMFFHEI 9 Unmodified _CRLMFFHEI_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 598.7921752929688 2 598.291179 1194.56781 0.44774 0.00026788 -0.93615 -0.00056009 -0.48841 -0.00029221 598.2905760220099 37.966 0.61113 41.682 41.33 41.941 3.7164 93 58 2 0 0 0 0.31407 5 6565 6493;6529;6565;6599;6621 13.042 2.243 1 137580 2514 8954 1604 1607 3137;3138;3139;3140;3141 3139 -0.02169564035307303 CRLMFFHEI 9 Unmodified _CRLMFFHEI_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 598.2911376953125 2 598.291179 1194.56781 0.44046 0.00026352 -1.1733 -0.000702 -0.73289 -0.00043848 598.2904420603795 38.022 0.6823 41.682 41.365 42.047 3.6595 100 65 2 0 0 0 0.37599 3 6437 6437;6520;6546 9.3831 1.7742 1 119030 2515 8954 1604 1607 3142;3143;3144 3142 -0.02169564035307303 CRLNSVQDVL 10 Unmodified _CRLNSVQDVL_ 0 0 0 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MSMS UPN48_class_I_Rep_2 6 573.8025512695312 2 573.800423 1145.58629 0.56436 0.00032383 0.43245 0.00024814 0.99681 0.00057197 573.8006082581536 59.237 0.75636 62.723 62.371 63.127 3.4868 93 50 2 0 0 0 0.53414 1 13097 13097 7.609 0.31972 1 152620 2516 16714 1605 1608 3145 3145 0.01932269140252174 CRLQEPEWWRM 11 Unmodified _CRLQEPEWWRM_ 0 0 0 REV__ENST00000228928.11_1_12:113409775-113410174:+|nuORF REV__ENST00000228928.11_1_12:113409775-113410174:+|nuORF MSMS UPN46_class_I_Rep_3 1 511.9999084472656 3 511.907834 1532.70167 NaN NaN NaN NaN NaN NaN NaN 27.823 1 27.823 27.323 28.323 0 0 0 0 0.38417 1 4185 4185 0.45452 0.35968 1 + 2517 21491 1606 1609 3146 3146 -0.04336950000424622 CRLVSNCWPQA 11 Unmodified _CRLVSNCWPQA_ 0 0 0 AluJr_dup58956|chr13:28008063-28008295:+|1.0930915497203266|0.0041922255096381|8.03|150.0|14|2|anti-sense AluJr_dup58956|chr13:28008063-28008295:+|1.0930915497203266|0.0041922255096381|8.03|150.0|14|2|anti-sense AluJr_dup58956|chr13:28008063-28008295:+|1.0930915497203266|0.0041922255096381|8.03|150.0|14|2|anti-sense MSMS UPN46_class_I_Rep_3 1 638.7987060546875 2 638.7999 1275.58525 NaN NaN NaN NaN NaN NaN NaN 65.794 1 65.794 65.294 66.294 0 0 0 0 0.38417 1 14890 14890 1.0715 0.46996 1 2518 165 1607 1610 3147 3147 -0.04152268500297396 CRLWDEDVT 9 Unmodified _CRLWDEDVT_ 0 0 0 REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1 REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1 MSMS UPN47_class_I_Rep_2 3 568.7554321289062 2 568.755681 1135.49681 NaN NaN NaN NaN NaN NaN NaN 25.564 1 29.047 28.547 29.547 3.483 0 0 0 0.39428 1 3568 3568 2.0598 0 1 + 2519 19893 1608 1611 3148 3148 -0.06551985539135785 CRNLNIERP 9 Unmodified _CRNLNIERP_ 0 0 0 ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENST00000530835.1_1_11:90015825-90016947:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 557.7931518554688 2 557.792932 1113.57131 0.48641 0.00027132 -0.37249 -0.00020777 0.11392 6.3543E-05 557.7926133286683 53.303 0.58828 56.498 56.171 56.759 3.1948 46 30 2 0 0 0 0.47197 1 12032 12032 3.5965 0 1 82087 2520 7292 1609 1612 3149 3149 0.019068220629151256 CRPAPHGY 8 Unmodified _CRPAPHGY_ 0 0 0 REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF MSMS UPN47_class_I_Rep_1 2 450.87249755859375 2 450.710879 899.407206 NaN NaN NaN NaN NaN NaN NaN 119.19 1 122.79 122.29 123.29 3.6036 0 0 0 0.40738 1 29606 29606 0.79363 0 1 + 2521 22772 1610 1613 3150 3150 -0.046521506371846044 CRPAPHGY 8 Unmodified _CRPAPHGY_ 0 0 0 REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF MSMS UPN47_class_I_Rep_2 3 450.7615966796875 2 450.710879 899.407206 NaN NaN NaN NaN NaN NaN NaN 116.29 1 119.79 119.29 120.29 3.4965 0 0 0 0.40738 1 28387 28387 0.79363 0 1 + 2522 22772 1610 1613 3151 3151 -0.046521506371846044 CRPAPHGY 8 Unmodified _CRPAPHGY_ 0 0 0 REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF MSMS UPN48_class_I_Rep_1 5 450.72393798828125 2 450.710879 899.407206 NaN NaN NaN NaN NaN NaN NaN 117.72 1 121.34 120.84 121.84 3.6215 0 0 0 0.40738 1 28691 28691 0.79363 0 1 + 2523 22772 1610 1613 3152 3152 -0.046521506371846044 CRPAPHGY 8 Unmodified _CRPAPHGY_ 0 0 0 REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF REV__ENST00000518881.5_1_8:23425823-23429007:+|nuORF MSMS UPN48_class_I_Rep_2 6 450.7723083496094 2 450.710879 899.407206 NaN NaN NaN NaN NaN NaN NaN 115.95 1 119.61 119.11 120.11 3.6607 0 0 0 0.40738 1 27767 27767 0.79363 0 1 + 2524 22772 1610 1613 3153 3153 -0.046521506371846044 CRPASLRVCT 10 Unmodified _CRPASLRVCT_ 0 0 0 ENST00000480133.1_1_3:98451741-98489752:+|nuORF ENST00000480133.1_1_3:98451741-98489752:+|nuORF ENST00000480133.1_1_3:98451741-98489752:+|nuORF MSMS UPN47_class_I_Rep_1 2 553.2857666015625 2 553.283886 1104.55322 NaN NaN NaN NaN NaN NaN NaN 61.667 1 65.035 64.535 65.535 3.3681 0 0 0 0.53105 1 14474 14474 7.1017 1.3699 1 2525 6992 1611 1614 3154 3154 0.005123638165741795 CRPHWKQTLL 10 Unmodified _CRPHWKQTLL_ 0 0 0 HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|234|2|anti-sense HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|234|2|anti-sense HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|234|2|anti-sense MSMS UPN48_class_I_Rep_2 6 641.347900390625 2 641.347874 1280.6812 NaN NaN NaN NaN NaN NaN NaN 60.552 1 64.03 63.53 64.53 3.4785 0 0 0 0.53105 1 13381 13381 1.4819 0 1 2526 8011 1612 1615 3155 3155 0.05208247402106281 CRQIVAAA 8 Unmodified _CRQIVAAA_ 0 0 0 REV__ENST00000576872.1_1_17:4872867-4875829:-|nuORF REV__ENST00000576872.1_1_17:4872867-4875829:-|nuORF MSMS UPN46_class_I_Rep_3 1 416.2277526855469 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 102.8 1 102.8 102.3 103.3 0 0 0 0 0.40625 1 25089 25089 2.3027 0 1 + 2527 18383 1613 1616 3156 3156 0.021253065396649617 CRRHKDCEG 9 Unmodified _CRRHKDCEG_ 0 0 0 ENSG00000135960|ENST00000258443|EDAR;nc|ENSG00000135960|Q9UNE0-2|EDAR ENSG00000135960|ENST00000258443|EDAR ENSG00000135960|ENST00000258443|EDAR MULTI-MSMS UPN47_class_I_Rep_1 2 552.7460327148438 2 552.245292 1102.47603 -0.0074792 -4.1303E-06 -1.5484 -0.00085508 -1.5558 -0.00085921 552.244445293632 37.424 0.080185 41.089 41.041 41.121 3.6652 8 5 2 0 0 0 0.48846 1 7099 7099 1.8442 0 1 33323 2528 2941 1614 1617 3157 3157 -0.07110854399797972 CRRQHCHF 8 Unmodified _CRRQHCHF_ 0 0 0 REV__L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|198|3|anti-sense REV__L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|198|3|anti-sense MSMS UPN48_class_I_Rep_1 5 543.7429809570312 2 543.745262 1085.47597 NaN NaN NaN NaN NaN NaN NaN 35.809 1 39.319 38.819 39.819 3.5101 0 0 0 0.40604 1 5906 5906 2.5775 0.27475 1 + 2529 24857 1615 1618 3158 3158 -0.06334809609120384 CRRQKHKMN 9 Unmodified _CRRQKHKMN_ 0 0 0 MLT1E2_dup3862|chr21:34897765-34898370:+|1.0922447075965345|0.0010602727347806|10.01|151.0|1|1|sense MLT1E2_dup3862|chr21:34897765-34898370:+|1.0922447075965345|0.0010602727347806|10.01|151.0|1|1|sense MLT1E2_dup3862|chr21:34897765-34898370:+|1.0922447075965345|0.0010602727347806|10.01|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 600.8119506835938 2 600.813676 1199.6128 NaN NaN NaN NaN NaN NaN NaN 46.753 1 49.997 49.497 50.497 3.2439 0 0 0 0.39518 1 10031 10031 1.8442 0.19162 1 2530 16373 1616 1619 3159 3159 0.020976795505930568 CRRRRNIW 8 Unmodified _CRRRRNIW_ 0 0 0 ENST00000476474.5_1_19:12098553-12146369:+|nuORF;ENST00000489336.5_1_19:12098553-12114231:+|nuORF;ENST00000406892.6_1_19:12098553-12137060:+|nuORF;ENST00000495324.5_1_19:12098553-12129101:+|nuORF ENST00000476474.5_1_19:12098553-12146369:+|nuORF ENST00000476474.5_1_19:12098553-12146369:+|nuORF MSMS UPN46_class_I_Rep_3 1 580.1229248046875 2 580.322525 1158.6305 NaN NaN NaN NaN NaN NaN NaN 71.442 1 71.442 70.942 71.942 0 0 0 0 0.40738 1 16457 16457 0.79363 0 1 2531 6613 1617 1620 3160 3160 0.05752762867746242 CRSTDSLHCVH 11 Unmodified _CRSTDSLHCVH_ 0 0 0 THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|8|1|sense THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|8|1|sense THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 629.2774658203125 2 629.276789 1256.53902 NaN NaN NaN NaN NaN NaN NaN 42.429 1 45.668 45.168 46.168 3.2394 0 0 0 0.38417 1 8704 8704 1.3295 0.72803 1 2532 32911 1618 1621 3161 3161 -0.07898333402386015 CRWCIHGW 8 Unmodified _CRWCIHGW_ 0 0 0 REV__L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|54|3|anti-sense REV__L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|54|3|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7344970703125 2 530.733832 1059.45311 NaN NaN NaN NaN NaN NaN NaN 25.354 1 28.991 28.491 29.491 3.6363 0 0 0 0.40738 1 3077 3077 0.79363 0 1 + 2533 25423 1619 1622 3162 3162 -0.07423828726609827 CRWHLVRFS 9 Unmodified _CRWHLVRFS_ 0 0 0 L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|114|3|anti-sense L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|114|3|anti-sense L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|114|3|anti-sense MSMS UPN47_class_I_Rep_3 4 401.87799072265625 3 401.878315 1202.61312 NaN NaN NaN NaN NaN NaN NaN 16.394 1 19.756 19.256 20.256 3.3619 0 0 0 0.4007 1 1015 1015 0.23584 0 1 2534 10094 1620 1623 3163 3163 0.019914225420961884 CRYKAEETGCT 11 Unmodified _CRYKAEETGCT_ 0 0 0 REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 MULTI-MSMS UPN47_class_I_Rep_1 2 630.771484375 2 630.771005 1259.52746 0.33453 0.00021101 0.17054 0.00010757 0.50507 0.00031859 630.7711372190314 51.36 0.85058 54.953 54.594 55.445 3.5933 60 42 2 0 0 0 0.66059 1 11258 11258 2.2828 0.80087 1 110710 + 2535 18628 1621 1624 3164 3164 -0.09192575216411569 CRYKAEETGCT 11 Unmodified _CRYKAEETGCT_ 0 0 0 REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 MULTI-MSMS UPN47_class_I_Rep_2 3 630.7711181640625 2 630.771005 1259.52746 0.50875 0.00032091 0.29569 0.00018651 0.80444 0.00050742 630.7712867072521 51.52 0.79649 54.858 54.617 55.413 3.3386 64 39 2 0 0 0 0.40526 2 11499 11499;11534 10.151 3.0488 1 123630 + 2536 18628 1621 1624 3165;3166 3165 -0.09192575216411569 CRYMALYLG 9 Unmodified _CRYMALYLG_ 0 0 0 L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|156|2|anti-sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|156|2|anti-sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|156|2|anti-sense MSMS UPN47_class_I_Rep_3 4 545.2657470703125 2 545.26463 1088.51471 NaN NaN NaN NaN NaN NaN NaN 119.07 1 122.49 121.99 122.99 3.4157 0 0 0 0.39428 1 29395 29395 2.0598 0.40713 1 2537 13745 1622 1625 3167 3167 -0.026009418179910426 CSCCCCWCFCC 11 Unmodified _CSCCCCWCFCC_ 0 0 0 REV__nc|ENSG00000147509|O76081-5|RGS20 REV__nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN46_class_I_Rep_3 1 632.141357421875 2 632.139174 1262.2638 NaN NaN NaN NaN NaN NaN NaN 75.474 1 75.474 74.974 75.974 0 0 0 0 0.38417 1 17550 17550 0 0 1 + 2538 19570 1623 1626 3168 3168 -0.3568455577626537 CSCCCCWCFCC 11 Unmodified _CSCCCCWCFCC_ 0 0 0 REV__nc|ENSG00000147509|O76081-5|RGS20 REV__nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN47_class_I_Rep_2 3 421.7957458496094 3 421.761875 1262.2638 NaN NaN NaN NaN NaN NaN NaN 76.186 1 79.507 79.007 80.007 3.3216 0 0 0 0.38417 1 18849 18849 0 0 1 + 2539 19570 1623 1626 3169 3169 -0.3568455577626537 CSCFCAPPQR 10 Unmodified _CSCFCAPPQR_ 0 0 0 REV__ENST00000296255.7_1_3:128369549-128369666:-|nuORF REV__ENST00000296255.7_1_3:128369549-128369666:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.225830078125 2 556.227722 1110.44089 NaN NaN NaN NaN NaN NaN NaN 99.704 1 103.15 102.65 103.65 3.4483 0 0 0 0.53105 1 24641 24641 1.6526 0.85899 1 + 2540 21653 1624 1627 3170 3170 -0.10991233251957055 CSCGEDNWWR 10 Unmodified _CSCGEDNWWR_ 0 0 0 L1M1_dup1495|chr3:52596500-52597377:-|2.623437087355208|0.0374052918459863|6.13|151.0|32|1|anti-sense L1M1_dup1495|chr3:52596500-52597377:-|2.623437087355208|0.0374052918459863|6.13|151.0|32|1|anti-sense L1M1_dup1495|chr3:52596500-52597377:-|2.623437087355208|0.0374052918459863|6.13|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_1 2 628.23486328125 2 628.23459 1254.45463 NaN NaN NaN NaN NaN NaN NaN 116.95 1 120.55 120.05 121.05 3.6036 0 0 0 0.53105 1 28978 28978 0.40072 0 1 2541 8492 1625 1628 3171 3171 -0.16242284219174508 CSCLWLTY 8 Unmodified _CSCLWLTY_ 0 0 0 nc|ENSG00000250423|Q9ULL0|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 MSMS UPN47_class_I_Rep_2 3 494.7347717285156 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 60.064 1 63.337 62.837 63.837 3.2731 0 0 0 0.39819 1 14028 14028 8.5933 0.68312 1 2542 16839 1626 1629 3172 3172 -0.0748029500902021 CSCSCCCCWCF 11 Unmodified _CSCSCCCCWCF_ 0 0 0 REV__nc|ENSG00000147509|O76081-5|RGS20 REV__nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN46_class_I_Rep_3 1 623.9388427734375 2 624.150596 1246.28664 NaN NaN NaN NaN NaN NaN NaN 61.411 1 61.411 60.911 61.911 0 0 0 0 0.38417 1 13665 13665 0 0 1 + 2543 19570 1627 1630 3173 3173 -0.3266521338716757 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 586.2250366210938 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 118.47 1 118.47 117.97 118.97 0 0 0 0 0.4007 1 29409 29409 0.52476 0.066424 1 2544 12751 1628 1631 3174 3174 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 586.3341674804688 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 118.87 1 118.87 118.37 119.37 0 0 0 0 0.4007 1 29523 29523 0.52476 0 1 2545 12751 1628 1631 3175 3175 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.1895751953125 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 117.27 1 120.76 120.26 121.26 3.4891 0 0 0 0.4007 1 28655 28655 0.52476 0.12405 1 2546 12751 1628 1631 3176 3176 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.1900634765625 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 119 1 122.48 121.98 122.98 3.4793 0 0 0 0.4007 1 29139 29139 0.52476 0.12405 1 2547 12751 1628 1631 3177 3177 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.1890869140625 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 119.34 1 122.82 122.32 123.32 3.4793 0 0 0 0.40038 1 29229 29229 0.6015 0.20078 1 2548 12751 1628 1631 3178 3178 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.1898803710938 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 114.09 1 117.58 117.08 118.08 3.4963 0 0 0 0.4007 1 28003 28003 0.52476 0.066424 1 2549 12751 1628 1631 3179 3179 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.2545776367188 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 114.22 1 117.71 117.21 118.21 3.4963 0 0 0 0.40038 1 28036 28036 0.6015 0.14316 1 2550 12751 1628 1631 3180 3180 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.1889038085938 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 116.76 1 120.2 119.7 120.7 3.4425 0 0 0 0.40038 1 28741 28741 0.6015 0.20078 1 2551 12751 1628 1631 3181 3181 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.189208984375 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 117.16 1 120.6 120.1 121.1 3.4425 0 0 0 0.40038 1 28853 28853 0.6015 0.20078 1 2552 12751 1628 1631 3182 3182 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.1890258789062 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 117.7 1 121.32 120.82 121.82 3.6215 0 0 0 0.40038 1 28685 28685 0.6015 0.20078 1 2553 12751 1628 1631 3183 3183 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.1904296875 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 117.44 1 121.1 120.6 121.6 3.6607 0 0 0 0.4007 1 28148 28148 0.52476 0.12405 1 2554 12751 1628 1631 3184 3184 -0.21408792863462622 CSCYECFWM 9 Unmodified _CSCYECFWM_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.1895751953125 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 119.17 1 122.84 122.34 123.34 3.6652 0 0 0 0.40038 1 28596 28596 0.6015 0.14316 1 2555 12751 1628 1631 3185 3185 -0.21408792863462622 CSDAWEEF 8 Unmodified _CSDAWEEF_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|3|1|sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.68133544921875 2 493.68165 985.348747 -0.18757 -9.2601E-05 -0.062459 -3.0835E-05 -0.25003 -0.00012344 493.68151831909006 42.973 1.0821 46.661 46.264 47.346 3.6875 134 70 3 0 0 0 0.82752 2 8720 8720;8759 5.7604 5.7604 1 183570 + 2556 32475 1629 1632 3186;3187 3186 -0.14451296792981339 CSDAWEEF 8 Unmodified _CSDAWEEF_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|3|1|sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.6813659667969 2 493.68165 985.348747 -0.040765 -2.0125E-05 -0.16876 -8.3314E-05 -0.20953 -0.00010344 493.68147431661674 43.286 0.93555 46.644 46.29 47.226 3.358 124 59 3 0 0 0 0.82752 1 8882 8882 5.7604 0 1 195080 + 2557 32475 1629 1632 3188 3188 -0.14451296792981339 CSDAWEEF 8 Unmodified _CSDAWEEF_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|3|1|sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.6814880371094 2 493.68165 985.348747 -0.091486 -4.5165E-05 -0.21766 -0.00010745 -0.30914 -0.00015262 493.6814905391095 43.373 1.0817 46.615 46.322 47.403 3.2419 107 66 2 0 0 0 0.82752 2 8943 8943;8990 5.7604 0 1 176270 + 2558 32475 1629 1632 3189;3190 3189 -0.14451296792981339 CSDCFFCC 8 Unmodified _CSDCFFCC_ 0 0 0 L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|45|2|anti-sense L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|45|2|anti-sense L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|45|2|anti-sense MSMS UPN46_class_I_Rep_3 1 464.1430969238281 2 464.128827 926.243102 NaN NaN NaN NaN NaN NaN NaN 70.34 1 70.34 69.84 70.84 0 0 0 0 0.40738 1 16159 16159 0.79363 0.79363 1 2559 9884 1630 1633 3191 3191 -0.22296995506110306 CSDGDDEKDEC 11 Unmodified _CSDGDDEKDEC_ 0 0 0 REV__ENSG00000278311|ENST00000613102|GGNBP2 REV__ENSG00000278311|ENST00000613102|GGNBP2 MSMS UPN47_class_I_Rep_2 3 405.7980041503906 3 405.797392 1214.37035 NaN NaN NaN NaN NaN NaN NaN 118.34 1 121.82 121.32 122.32 3.4822 0 0 0 0.38417 1 28952 28952 0.094841 0.094841 1 + 2560 21442 1631 1634 3192 3192 -0.22826324617221871 CSDGDDEKDEC 11 Unmodified _CSDGDDEKDEC_ 0 0 0 REV__ENSG00000278311|ENST00000613102|GGNBP2 REV__ENSG00000278311|ENST00000613102|GGNBP2 MSMS UPN47_class_I_Rep_3 4 405.7979736328125 3 405.797392 1214.37035 NaN NaN NaN NaN NaN NaN NaN 21.416 1 24.766 24.266 25.266 3.3496 0 0 0 0.38417 1 2393 2393 0.094841 0.094841 1 + 2561 21442 1631 1634 3193 3193 -0.22826324617221871 CSDGDDEKDEC 11 Unmodified _CSDGDDEKDEC_ 0 0 0 REV__ENSG00000278311|ENST00000613102|GGNBP2 REV__ENSG00000278311|ENST00000613102|GGNBP2 MSMS UPN48_class_I_Rep_1 5 405.7981262207031 3 405.797392 1214.37035 NaN NaN NaN NaN NaN NaN NaN 26.994 1 30.557 30.057 31.057 3.5629 0 0 0 0.38417 1 3406 3406 0.094841 0.094841 1 + 2562 21442 1631 1634 3194 3194 -0.22826324617221871 CSFDDCECY 9 Unmodified _CSFDDCECY_ 0 0 0 REV__nc|ENSG00000259207|P05106-2|ITGB3 REV__nc|ENSG00000259207|P05106-2|ITGB3 MSMS UPN46_class_I_Rep_3 1 542.7976684570312 2 542.656461 1083.29837 NaN NaN NaN NaN NaN NaN NaN 52.677 1 52.677 52.177 53.177 0 0 0 0 0.40038 1 11275 11275 0.6015 0.076735 1 + 2563 21391 1632 1635 3195 3195 -0.23994910504643485 CSFMLIHL 8 Unmodified _CSFMLIHL_ 0 0 0 Tigger6a_dup533|chr10:26815934-26816884:+|1.5611777033938554|0.0110383573792401|7.14|150.0|48|1|anti-sense Tigger6a_dup533|chr10:26815934-26816884:+|1.5611777033938554|0.0110383573792401|7.14|150.0|48|1|anti-sense Tigger6a_dup533|chr10:26815934-26816884:+|1.5611777033938554|0.0110383573792401|7.14|150.0|48|1|anti-sense MSMS UPN47_class_I_Rep_2 3 482.2440185546875 2 482.243166 962.47178 NaN NaN NaN NaN NaN NaN NaN 119.86 1 123.34 122.84 123.84 3.4793 0 0 0 0.40738 1 29375 29375 0.79363 0 1 2564 33448 1633 1636 3196 3196 -0.010957118753708528 CSFPFAEESF 10 Unmodified _CSFPFAEESF_ 0 0 0 L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|274|2|anti-sense;L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|217|2|anti-sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|274|2|anti-sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|274|2|anti-sense MSMS UPN46_class_I_Rep_3 1 582.2371826171875 2 582.239332 1162.46411 NaN NaN NaN NaN NaN NaN NaN 44.144 1 44.144 43.644 44.644 0 0 0 0 0.53105 1 8871 8871 8.7454 0.58988 1 2565 14265 1634 1637 3197 3197 -0.1106219266196149 CSFTSFSKFL 10 Unmodified _CSFTSFSKFL_ 0 0 0 REV__L1MB7_dup3017|chr2:148049542-148051604:-|2.6165224352892835|0.0921636987299822|4.83|151.0|85|1|anti-sense REV__L1MB7_dup3017|chr2:148049542-148051604:-|2.6165224352892835|0.0921636987299822|4.83|151.0|85|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 583.7811279296875 2 583.781167 1165.54778 0.43712 0.00025518 -0.1532 -8.9433E-05 0.28393 0.00016575 583.7809145359771 65.698 0.50403 68.878 68.685 69.189 3.1795 39 28 2 0 0 0 0.53414 1 15809 15809 7.609 0.88579 1 75781 + 2566 26247 1635 1638 3198 3198 -0.028370364942475135 CSGLYVLDSF 10 Unmodified _CSGLYVLDSF_ 0 0 0 REV__HERVL40-int_dup384|chr5:43155160-43156033:-|1.141937494162668|0.0181538812168025|5.98|151.0|47|2|anti-sense REV__HERVL40-int_dup384|chr5:43155160-43156033:-|1.141937494162668|0.0181538812168025|5.98|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.2577514648438 2 552.257525 1102.5005 0.54036 0.00029842 -0.12056 -6.6582E-05 0.4198 0.00023184 552.2573891336273 71.192 1.0118 74.658 74.308 75.319 3.466 183 97 2 0 0 0 0.54822 1 16814 16814 5.7319 1.7875 1 815000 + 2567 23917 1636 1639 3199 3199 -0.04665315765282685 CSGLYVLDSF 10 Unmodified _CSGLYVLDSF_ 0 0 0 REV__HERVL40-int_dup384|chr5:43155160-43156033:-|1.141937494162668|0.0181538812168025|5.98|151.0|47|2|anti-sense REV__HERVL40-int_dup384|chr5:43155160-43156033:-|1.141937494162668|0.0181538812168025|5.98|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_1 5 552.2579956054688 2 552.257525 1102.5005 NaN NaN NaN NaN NaN NaN NaN 71.969 1 75.443 74.943 75.943 3.4732 0 0 0 0.53105 1 16863 16863 5.7319 0.50118 1 + 2568 23917 1636 1639 3200 3200 -0.04665315765282685 CSHAVIHWY 9 Unmodified _CSHAVIHWY_ 0 0 0 REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|226|1|anti-sense REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|226|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.2592163085938 2 558.258194 1114.50183 0.38801 0.00021661 2.2152 0.0012366 2.6032 0.0014532 558.2594684106701 72.884 0.2634 76.264 76.115 76.378 3.3799 22 17 2 0 0 0 0.46434 1 17880 17880 4.3292 1.44 1 47223 + 2569 24771 1637 1640 3201 3201 -0.050836368858426795 CSHNMTFCW 9 Unmodified _CSHNMTFCW_ 0 0 0 HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|38|2|sense HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|38|2|sense HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|38|2|sense MSMS UPN47_class_I_Rep_1 2 564.70458984375 2 564.706622 1127.39869 NaN NaN NaN NaN NaN NaN NaN 21.657 1 25.332 24.832 25.832 3.6749 0 0 0 0.39518 1 2386 2386 1.8442 0.19162 1 2570 8339 1638 1641 3202 3202 -0.15991208660329903 CSHVQRPGPF 10 Unmodified _CSHVQRPGPF_ 0 0 0 REV__L1MA2_dup6802|chr16:72454002-72456205:-|1.3737781769536197|0.0125777713952283|6.77|151.0|138|3|anti-sense REV__L1MA2_dup6802|chr16:72454002-72456205:-|1.3737781769536197|0.0125777713952283|6.77|151.0|138|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2750244140625 2 564.274375 1126.5342 NaN NaN NaN NaN NaN NaN NaN 118.86 1 122.48 121.98 122.98 3.6189 0 0 0 0.53105 1 29002 29002 1.3295 0.63916 1 + 2571 24939 1639 1642 3203 3203 -0.024008494828422045 CSLDCTRTSKN 11 Unmodified _CSLDCTRTSKN_ 0 0 0 ENST00000342992.10_3_2:179584396-179584768:-|nuORF ENST00000342992.10_3_2:179584396-179584768:-|nuORF ENST00000342992.10_3_2:179584396-179584768:-|nuORF MSMS UPN48_class_I_Rep_3 7 614.276611328125 2 614.276454 1226.53836 NaN NaN NaN NaN NaN NaN NaN 20.639 1 24.306 23.806 24.806 3.6667 0 0 0 0.38417 1 1796 1796 1.0715 0.38109 1 2572 6244 1640 1643 3204 3204 -0.06585172842096654 CSLELTIEFCN 11 Unmodified _CSLELTIEFCN_ 0 0 0 REV__ENSG00000108582|ENST00000225719|CPD;REV__ENSG00000120054|ENST00000370418|CPN1 REV__ENSG00000108582|ENST00000225719|CPD MSMS UPN47_class_I_Rep_2 3 636.28466796875 2 636.285956 1270.55736 NaN NaN NaN NaN NaN NaN NaN 77.248 1 80.58 80.08 81.08 3.3315 0 0 0 0.38417 1 19152 19152 2.7352 0.89096 1 + + 2573 18386;18698 1641 1644 3205 3205 -0.06709636271034469 CSLTLGLWQH 10 Unmodified _CSLTLGLWQH_ 0 0 0 ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown MSMS UPN48_class_I_Rep_1 5 579.3483276367188 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 86.042 1 89.655 89.155 90.155 3.613 0 0 0 0.53105 1 20605 20605 3.5965 1.5367 1 2574 5263 1642 1645 3206 3206 -0.002108120258526469 CSNNIQAENQI 11 Unmodified _CSNNIQAENQI_ 0 0 0 L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|46|3|sense L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|46|3|sense L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|46|3|sense MSMS UPN48_class_I_Rep_1 5 617.280517578125 2 617.280051 1232.54555 NaN NaN NaN NaN NaN NaN NaN 47.412 1 50.934 50.434 51.434 3.5219 0 0 0 0.38417 1 9367 9367 2.086 0 1 2575 14177 1643 1646 3207 3207 -0.06142116970022471 CSPCKHHHLQ 10 Unmodified _CSPCKHHHLQ_ 0 0 0 REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 595.7745361328125 2 595.271309 1188.52807 0.40075 0.00023856 1.6935 0.0010081 2.0942 0.0012466 595.2720694772293 58.17 0.54468 61.607 61.342 61.887 3.437 40 34 2 0 0 0 0.56033 1 13411 13411 3.5965 0.31518 1 85924 + 2576 27445 1644 1647 3208 3208 -0.05865690986024674 CSPCKHHHLQ 10 Unmodified _CSPCKHHHLQ_ 0 0 0 REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 595.2957763671875 2 595.271309 1188.52807 0.40075 0.00023856 1.6935 0.0010081 2.0942 0.0012466 595.2720694772293 58.17 0.54468 61.607 61.342 61.887 3.437 40 34 2 0 0 0 0.84575 1 13391 13391 3.5965 1.5367 1 85924 + 2577 27445 1644 1647 3209 3209 -0.05865690986024674 CSPCKHHHLQ 10 Unmodified _CSPCKHHHLQ_ 0 0 0 REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 595.2720947265625 2 595.271309 1188.52807 0.51952 0.00030925 1.2278 0.00073086 1.7473 0.0010401 595.2719685664919 58.455 0.50756 61.736 61.507 62.014 3.2818 39 27 2 0 0 0 0.56033 1 13523 13523 3.5965 1.2938 1 126230 + 2578 27445 1644 1647 3210 3210 -0.05865690986024674 CSPCKHHHLQ 10 Unmodified _CSPCKHHHLQ_ 0 0 0 REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense REV__L1MD2_dup8920|chr15:64485803-64486115:-|1.697362802946318|0.0036163104926173|8.87|151.0|25|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 595.271309 1188.52807 0.51952 0.00030925 1.2278 0.00073086 1.7473 0.0010401 595.2719685664919 58.455 0.50756 61.736 61.507 62.014 3.2818 0.071131 -0.00042968 NaN 3.5965 39 27 2 NaN NaN NaN NaN 0 NaN NaN 0 126230 + 2579 27445 1644 1647 -0.05865690986024674 CSPCVPFPLAR 11 Unmodified _CSPCVPFPLAR_ 0 0 0 REV__L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|226|3|anti-sense REV__L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|226|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 595.7734985351562 2 595.296462 1188.57837 0.34484 0.00020528 -0.80431 -0.0004788 -0.45947 -0.00027352 595.2959309105838 58.259 0.53576 61.425 61.172 61.708 3.1658 58 32 2 0 0 0 22.551 1 13594 13594 2.9952 0.49676 1 139640 + 2580 30347 1645 1648 3211 3211 -0.008375813808925159 CSPDDGHYDP 10 Unmodified _CSPDDGHYDP_ 0 0 0 ENST00000594943.1_1_19:58038790-58063865:+|nuORF ENST00000594943.1_1_19:58038790-58063865:+|nuORF ENST00000594943.1_1_19:58038790-58063865:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 553.279296875 2 553.198196 1104.38184 0.38508 0.00021303 -0.77567 -0.0004291 -0.39059 -0.00021607 553.1977037053059 64.612 0.777 67.868 67.477 68.254 3.2556 106 61 2 0 0 0 0.54466 1 15342 15342 6.2058 6.2058 1 155210 2581 7644 1646 1649 3212 3212 -0.16617714740937117 CSPDDGHYDP 10 Unmodified _CSPDDGHYDP_ 0 0 0 ENST00000594943.1_1_19:58038790-58063865:+|nuORF ENST00000594943.1_1_19:58038790-58063865:+|nuORF ENST00000594943.1_1_19:58038790-58063865:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 553.198196 1104.38184 0.39434 0.00021815 -0.87039 -0.0004815 -0.47606 -0.00026335 553.1975911059786 64.391 0.75797 67.746 67.421 68.179 3.3557 -0.028519 -8.0576E-05 NaN 6.2058 114 75 2 NaN NaN NaN NaN 0 NaN NaN 0 150150 2582 7644 1646 1649 -0.16617714740937117 CSPDDGHYDP 10 Unmodified _CSPDDGHYDP_ 0 0 0 ENST00000594943.1_1_19:58038790-58063865:+|nuORF ENST00000594943.1_1_19:58038790-58063865:+|nuORF ENST00000594943.1_1_19:58038790-58063865:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 553.198196 1104.38184 0.42874 0.00023718 -0.76002 -0.00042044 -0.33128 -0.00018326 553.1976861917757 64.537 0.9411 67.711 67.426 68.367 3.1741 -0.06409 4.154E-05 NaN 6.2058 88 73 2 NaN NaN NaN NaN 0 NaN NaN 0 170080 2583 7644 1646 1649 -0.16617714740937117 CSPYLFVPEL 10 Unmodified _CSPYLFVPEL_ 0 0 0 L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|73|3|anti-sense L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|73|3|anti-sense L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|73|3|anti-sense MSMS UPN47_class_I_Rep_3 4 584.2894287109375 2 584.291368 1166.56818 NaN NaN NaN NaN NaN NaN NaN 58.841 1 62.006 61.506 62.506 3.1658 0 0 0 0.53105 1 13703 13703 5.7319 0.50118 1 2584 9579 1647 1650 3213 3213 -0.008438658344402938 CSQINLFAWQ 10 Unmodified _CSQINLFAWQ_ 0 0 0 REV__L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|330|3|anti-sense REV__L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|330|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 604.7868041992188 2 605.289691 1208.56483 0.37667 0.00022799 -2.7048 -0.0016372 -2.3282 -0.0014092 605.2883398354759 69.241 0.43794 72.609 72.285 72.723 3.3678 44 31 2 0 0 0 0.84575 1 16723 16723 4.897 1.3005 1 95081 + 2585 28835 1648 1651 3214 3214 -0.031111158884641554 CSQKAKGEL 9 Unmodified _CSQKAKGEL_ 0 0 0 ENSG00000166816|ENST00000450168|LDHD;nc|ENSG00000166816|Q86WU2|LDHD ENSG00000166816|ENST00000450168|LDHD ENSG00000166816|ENST00000450168|LDHD MULTI-MSMS UPN48_class_I_Rep_1 5 482.250732421875 2 482.250034 962.485516 0.28435 0.00013713 0.88948 0.00042895 1.1738 0.00056608 482.250309943122 61.523 0.24502 64.991 64.896 65.141 3.4678 27 21 2 0 0 0 0.47763 1 13686 13686 2.9952 2.9952 1 74600 2586 4264 1649 1652 3215 3215 0.0027723715739966792 CSRCTLIHVD 10 Unmodified _CSRCTLIHVD_ 0 0 0 REV__MLT1E2_dup2926|chr12:104716941-104717265:-|1.3132791521049545|0.0047279303151044|8.12|151.0|6|2|sense REV__MLT1E2_dup2926|chr12:104716941-104717265:-|1.3132791521049545|0.0047279303151044|8.12|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 573.7726440429688 2 573.773351 1145.53215 NaN NaN NaN NaN NaN NaN NaN 78.658 1 82 81.5 82.5 3.3428 0 0 0 0.53105 1 19547 19547 1.3295 0.5359 1 + 2587 31697 1650 1653 3216 3216 -0.03479646282971771 CSRPSRGYLY 10 Unmodified _CSRPSRGYLY_ 0 0 0 L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|19|1|sense L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|19|1|sense L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|19|1|sense MSMS UPN48_class_I_Rep_3 7 601.2945556640625 2 601.292765 1200.57098 NaN NaN NaN NaN NaN NaN NaN 71.584 1 75.11 74.61 75.61 3.5266 0 0 0 0.53105 1 16634 16634 3.2813 0.28607 1 2588 9277 1651 1654 3217 3217 -0.021285976569288323 CSSDGMGFHCT 11 Unmodified _CSSDGMGFHCT_ 0 0 0 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 MSMS UPN48_class_I_Rep_2 6 572.6963500976562 2 572.696451 1143.37835 NaN NaN NaN NaN NaN NaN NaN 27.249 1 30.88 30.38 31.38 3.6311 0 0 0 0.38417 1 3583 3583 1.1933 0.39971 1 2589 1126 1652 1655 3218 3218 -0.18760424110791973 CSSQGVCMCCS 11 Unmodified _CSSQGVCMCCS_ 0 0 0 L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|358|3|anti-sense L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|358|3|anti-sense L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|358|3|anti-sense MSMS UPN48_class_I_Rep_1 5 553.8452758789062 2 554.17344 1106.33233 NaN NaN NaN NaN NaN NaN NaN 18.227 1 21.759 21.259 22.259 3.5313 0 0 0 0.38417 1 1193 1193 0.26902 0.26902 1 2590 14608 1653 1656 3219 3219 -0.21658528608895722 CSSTLVKHKRN 11 Unmodified _CSSTLVKHKRN_ 0 0 0 ENSG00000234444|ENST00000423484|ZNF736 ENSG00000234444|ENST00000423484|ZNF736 ENSG00000234444|ENST00000423484|ZNF736 MSMS UPN47_class_I_Rep_3 4 636.8466186523438 2 636.845696 1271.67684 NaN NaN NaN NaN NaN NaN NaN 12.466 1 15.841 15.341 16.341 3.3753 0 0 0 0.38417 1 88 88 0.30703 0 1 2591 5685 1654 1657 3220 3220 0.05186738188558593 CSSVCCSPHCC 11 Unmodified _CSSVCCSPHCC_ 0 0 0 REV__ENSG00000171396|ENST00000390661|KRTAP4-4 REV__ENSG00000171396|ENST00000390661|KRTAP4-4 MSMS UPN47_class_I_Rep_3 4 564.6731567382812 2 564.673607 1127.33266 NaN NaN NaN NaN NaN NaN NaN 100.02 1 103.46 102.96 103.96 3.4483 0 0 0 0.38417 1 24719 24719 1.3295 0 1 + + 2592 17502 1655 1658 3221 3221 -0.2259110888903706 CSTPEMCVLR 10 Unmodified _CSTPEMCVLR_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS UPN47_class_I_Rep_3 4 569.318115234375 2 569.756312 1137.49807 NaN NaN NaN NaN NaN NaN NaN 45.137 1 48.381 47.881 48.881 3.2441 0 0 0 0.53105 1 9534 9534 1.3295 0.13619 1 2593 7210 1656 1659 3222 3222 -0.06517810766240473 CSYCTESGTK 10 Unmodified _CSYCTESGTK_ 0 0 0 ENST00000515541.1_1_4:79838951-79847783:-|nuORF ENST00000515541.1_1_4:79838951-79847783:-|nuORF ENST00000515541.1_1_4:79838951-79847783:-|nuORF MSMS UPN46_class_I_Rep_3 1 539.711181640625 2 539.712624 1077.4107 NaN NaN NaN NaN NaN NaN NaN 20.412 1 20.412 19.912 20.912 0 0 0 0 0.53105 1 2118 2118 1.1933 0.39971 1 2594 7205 1657 1660 3223 3223 -0.12491313436157725 CSYFAPTLRF 10 Unmodified _CSYFAPTLRF_ 0 0 0 REV__L1ME4b_dup6376|chr5:61337450-61337859:+|1.5756694827996938|0.1041895905065608|3.92|151.0|32|3|anti-sense REV__L1ME4b_dup6376|chr5:61337450-61337859:+|1.5756694827996938|0.1041895905065608|3.92|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_2 6 602.796875 2 602.794609 1203.57467 NaN NaN NaN NaN NaN NaN NaN 65.66 1 69.139 68.639 69.639 3.4792 0 0 0 0.53105 1 14941 14941 4.5289 0.19963 1 + 2595 28301 1658 1661 3224 3224 -0.01897927883101147 CTCPCNEWCW 10 Unmodified _CTCPCNEWCW_ 0 0 0 REV__L1MA6_dup1716|chr5:50772996-50773837:-|1.3973536704468823|0.0289610575994159|5.59|151.0|11|2|sense REV__L1MA6_dup1716|chr5:50772996-50773837:-|1.3973536704468823|0.0289610575994159|5.59|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 622.705322265625 2 622.703222 1243.39189 NaN NaN NaN NaN NaN NaN NaN 117.12 1 117.12 116.62 117.62 0 0 0 0 0.53105 1 29019 29019 3.5965 0 1 + 2596 25442 1659 1662 3225 3225 -0.2200688960322168 CTCSILHLCVI 11 Unmodified _CTCSILHLCVI_ 0 0 0 ENSG00000168830|ENST00000305344|HTR1E ENSG00000168830|ENST00000305344|HTR1E ENSG00000168830|ENST00000305344|HTR1E MSMS UPN47_class_I_Rep_2 3 602.796142578125 2 602.79798 1203.58141 NaN NaN NaN NaN NaN NaN NaN 35.723 1 39.135 38.635 39.635 3.4114 0 0 0 0.38417 1 6619 6619 1.3295 0.5359 1 2597 4392 1660 1663 3226 3226 -0.012240743183610903 CTFMVWRW 8 Unmodified _CTFMVWRW_ 0 0 0 Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|66|2|anti-sense Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|66|2|anti-sense Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|66|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.3029174804688 2 564.759515 1127.50448 NaN NaN NaN NaN NaN NaN NaN 19.93 1 23.281 22.781 23.781 3.3514 0 0 0 0.40604 1 1959 1959 2.5775 0 1 2598 33207 1661 1664 3227 3227 -0.05417504752517743 CTFMVWRW 8 Unmodified _CTFMVWRW_ 0 0 0 Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|66|2|anti-sense Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|66|2|anti-sense Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|66|2|anti-sense MSMS UPN48_class_I_Rep_3 7 564.7616577148438 2 564.759515 1127.50448 NaN NaN NaN NaN NaN NaN NaN 22.238 1 25.952 25.452 26.452 3.7144 0 0 0 0.40625 1 2238 2238 2.3027 0 1 2599 33207 1661 1664 3228 3228 -0.05417504752517743 CTFSLSIYSF 10 Unmodified _CTFSLSIYSF_ 0 0 0 REV__L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|32|1|anti-sense REV__L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|32|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.2782592773438 2 584.273175 1166.5318 0.53203 0.00031085 0.14647 8.5577E-05 0.6785 0.00039643 584.7737255294413 63.834 0.13708 67.292 67.187 67.324 3.4578 17 11 2 0 0 0 0.54822 1 14410 14410 5.7319 0 1 89703 + 2600 28151 1662 1665 3229 3229 -0.044807427311525316 CTFSLSIYSF 10 Unmodified _CTFSLSIYSF_ 0 0 0 REV__L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|32|1|anti-sense REV__L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|32|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 584.2723999023438 2 584.273175 1166.5318 0.5214 0.00030464 1.8443 0.0010776 2.3657 0.0013822 584.2744353087286 63.77 0.29347 67.245 67.147 67.441 3.4743 27 20 2 0 0 0 0.48573 1 14371 14371 13.042 0 1 77021 + 2601 28151 1662 1665 3230 3230 -0.044807427311525316 CTHGSRSHKL 10 Unmodified _CTHGSRSHKL_ 0 0 0 REV__L1ME1_dup6956|chr3:158378000-158378940:-|1.2565796855109037|0.0113532924478128|6.79|151.0|29|3|sense REV__L1ME1_dup6956|chr3:158378000-158378940:-|1.2565796855109037|0.0113532924478128|6.79|151.0|29|3|sense MSMS UPN48_class_I_Rep_2 6 563.2825317382812 2 563.282731 1124.55091 NaN NaN NaN NaN NaN NaN NaN 38.689 1 42.419 41.919 42.919 3.7297 0 0 0 0.53105 1 6774 6774 1.1933 0 1 + 2602 27792 1663 1666 3231 3231 -0.006383485969081448 CTHSSLLCCHH 11 Unmodified _CTHSSLLCCHH_ 0 0 0 REV__LTR17_dup119|chr3:17735447-17736208:-|1.8772225305208552|0.0262988074387802|6.16|151.0|23|3|sense REV__LTR17_dup119|chr3:17735447-17736208:-|1.8772225305208552|0.0262988074387802|6.16|151.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 620.7555541992188 2 620.754635 1239.49472 NaN NaN NaN NaN NaN NaN NaN 29.428 1 33.185 32.685 33.685 3.7578 0 0 0 0.38417 1 4672 4672 1.4819 0 1 + 2603 30861 1664 1667 3232 3232 -0.11545060820230901 CTIFVSFIPH 10 Unmodified _CTIFVSFIPH_ 0 0 0 L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|122|2|anti-sense L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|122|2|anti-sense L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|122|2|anti-sense MSMS UPN47_class_I_Rep_1 2 582.299560546875 2 582.299527 1162.5845 NaN NaN NaN NaN NaN NaN NaN 82.637 1 86.176 85.676 86.676 3.5386 0 0 0 0.53105 1 20649 20649 3.5965 1.5367 1 2604 15166 1665 1668 3233 3233 0.009712601222872763 CTKCMYRLV 9 Unmodified _CTKCMYRLV_ 0 0 0 REV__L1PA7_dup1014|chr2:31834383-31835303:-|1.8813832039690064|0.3959360400363104|2.25|151.0|50|3|anti-sense REV__L1PA7_dup1014|chr2:31834383-31835303:-|1.8813832039690064|0.3959360400363104|2.25|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_1 2 558.7699584960938 2 558.771765 1115.52898 NaN NaN NaN NaN NaN NaN NaN 27.96 1 31.727 31.227 32.227 3.7662 0 0 0 0.39518 1 4238 4238 1.8442 0.19162 1 + 2605 29962 1666 1669 3234 3234 -0.024166126613181405 CTKEMEFKCML 11 Unmodified _CTKEMEFKCML_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS UPN47_class_I_Rep_1 2 454.8674011230469 3 454.869 1361.58517 NaN NaN NaN NaN NaN NaN NaN 23.268 1 26.972 26.472 27.472 3.7042 0 0 0 0.38417 1 2848 2848 0.40827 0.13925 1 2606 5206 1667 1670 3235 3235 -0.08115772606811333 CTKEMEFKCML 11 Unmodified _CTKEMEFKCML_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS UPN48_class_I_Rep_1 5 454.8659973144531 3 454.869 1361.58517 NaN NaN NaN NaN NaN NaN NaN 112.39 1 116.02 115.52 116.52 3.6321 0 0 0 0.38417 1 27274 27274 0.40827 0 1 2607 5206 1667 1670 3236 3236 -0.08115772606811333 CTQNDHCFH 9 Unmodified _CTQNDHCFH_ 0 0 0 REV__nc|ENSG00000030582|P28799-3|GRN REV__nc|ENSG00000030582|P28799-3|GRN MSMS UPN47_class_I_Rep_3 4 552.2154541015625 2 552.702925 1103.3913 NaN NaN NaN NaN NaN NaN NaN 117.79 1 121.21 120.71 121.71 3.4238 0 0 0 0.40038 1 29030 29030 0.6015 0.076735 1 + 2608 17624 1668 1671 3237 3237 -0.1562622493638628 CTRYWHWRYHN 11 Unmodified _CTRYWHWRYHN_ 0 0 0 HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|144|2|sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|144|2|sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|144|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.2467041015625 3 541.245838 1620.71568 0.088258 4.7769E-05 0.84016 0.00045473 0.92841 0.0005025 541.2464370349112 43.631 0.62888 47.326 47.169 47.798 3.6951 65 37 2 0 0 0 0.68478 1 9062 9062 0.094841 0 1 94089 2609 8017 1669 1672 3238 3238 -0.06984536457071044 CTRYWHWRYHN 11 Unmodified _CTRYWHWRYHN_ 0 0 0 HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|144|2|sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|144|2|sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|144|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 541.245838 1620.71568 0.15995 8.6572E-05 0.60804 0.0003291 0.76799 0.00041567 541.2462371852503 44.211 0.41998 47.455 47.257 47.677 3.2441 0.064516 -0.0002558 NaN 0.094841 42 26 2 NaN NaN NaN NaN 0 NaN NaN 0 85169 2610 8017 1669 1672 -0.06984536457071044 CTSNNMCEC 9 Unmodified _CTSNNMCEC_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-2|MEGF11 REV__nc|ENSG00000157890|A6BM72-2|MEGF11 MSMS UPN48_class_I_Rep_1 5 502.6500549316406 2 502.650655 1003.28676 NaN NaN NaN NaN NaN NaN NaN 105.97 1 109.6 109.1 110.1 3.6277 0 0 0 0.4007 1 25536 25536 0.52476 0.066424 1 + 2611 19830 1670 1673 3239 3239 -0.21475430799625883 CTSNNMCEC 9 Unmodified _CTSNNMCEC_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-2|MEGF11 REV__nc|ENSG00000157890|A6BM72-2|MEGF11 MSMS UPN48_class_I_Rep_3 7 502.6501770019531 2 502.650655 1003.28676 NaN NaN NaN NaN NaN NaN NaN 105.54 1 109.24 108.74 109.74 3.702 0 0 0 0.4007 1 24905 24905 0.52476 0.52476 1 + 2612 19830 1670 1673 3240 3240 -0.21475430799625883 CTTLVIDLL 9 Unmodified _CTTLVIDLL_ 0 0 0 REV__L1PA16_dup12207|chr15:56996279-56997636:+|1.617078546910053|0.0339452283375037|5.57|151.0|26|2|sense REV__L1PA16_dup12207|chr15:56996279-56997636:+|1.617078546910053|0.0339452283375037|5.57|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.7808837890625 2 495.780636 989.546719 0.25428 0.00012607 -0.30021 -0.00014884 -0.045929 -2.2771E-05 495.78035447987537 83.985 1.1067 87.335 86.749 87.856 3.35 206 131 2 0 0 0 0.46869 1 21199 21199 3.9444 0 1 190070 + 2613 29344 1671 1674 3241 3241 0.05152749136846069 CTVIKKRQRQR 11 Unmodified _CTVIKKRQRQR_ 0 0 0 REV__MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense REV__MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 472.6176452636719 3 472.617383 1414.83032 NaN NaN NaN NaN NaN NaN NaN 93.467 1 97.237 96.737 97.737 3.77 0 0 0 0.38417 1 22223 22223 1.3296 0.63198 1 + 2614 31631 1672 1675 3242 3242 0.13949773024842216 CTWFPALGGF 10 Unmodified _CTWFPALGGF_ 0 0 0 Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|115|2|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|115|2|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|115|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 550.294921875 2 549.757495 1097.50044 0.51472 0.00028297 2.7936 0.0015358 3.3083 0.0018188 550.2611528905031 71.92 0.080078 75.386 75.37 75.45 3.466 10 6 2 0 0 0 0.84575 1 16847 16847 6.2058 0 1 43930 2615 7977 1673 1676 3243 3243 -0.044412709746211476 CTYRHLLGVC 10 Unmodified _CTYRHLLGVC_ 0 0 0 REV__L1PA6_dup4888|chr13:40837732-40841867:+|1.314296541976958|0.4091051293608128|1.68|151.0|123|1|anti-sense REV__L1PA6_dup4888|chr13:40837732-40841867:+|1.314296541976958|0.4091051293608128|1.68|151.0|123|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.7863159179688 2 582.786261 1163.55797 NaN NaN NaN NaN NaN NaN NaN 77.836 1 81.118 80.618 81.618 3.2816 0 0 0 0.53105 1 19392 19392 4.3292 0 1 + 2616 29921 1674 1677 3244 3244 -0.01726752040667634 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.2634582519531 2 497.262945 992.511337 -0.25257 -0.00012559 0.30179 0.00015007 0.049216 2.4473E-05 497.2629631970701 37.65 1.1169 41.315 40.937 42.054 3.6652 198 84 3 0 0 0 0.82752 4 7095 7095;7286;7325;7367 10.824 2.9138 1 867850 + 2617 21512 1675 1678 3245;3246;3247;3248 3245 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.26300048828125 2 497.262945 992.511337 -0.14562 -7.2414E-05 -0.0060068 -2.987E-06 -0.15163 -7.5401E-05 497.2628704359835 44.227 0.79259 47.922 47.41 48.203 3.6951 78 53 2 0 0 0 0.82752 2 9138 9043;9138 6.7232 2.3939 1 109570 + 2618 21512 1675 1678 3249;3250 3250 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.2628173828125 2 497.262945 992.511337 -0.11741 -5.8385E-05 0.17327 8.6161E-05 0.055856 2.7775E-05 497.2630044575126 45.067 1.6671 48.767 48.122 49.789 3.6999 157 106 2 0 0 0 0.82752 5 9436 9436;9478;9521;9564;9611 6.7232 2.3939 1 157600 + 2619 21512 1675 1678 3251;3252;3253;3254;3255 3251 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 497.2629699707031 2 497.262945 992.511337 -0.1546 -7.6878E-05 0.21459 0.00010671 0.059989 2.983E-05 497.262934568386 38.037 1.5586 41.424 40.919 42.478 3.3879 252 119 3 0 0 0 0.82752 4 7292 7292;7333;7372;7446 36.044 11.37 1 864650 + 2620 21512 1675 1678 3256;3257;3258;3259 3256 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 497.2630310058594 2 497.262945 992.511337 0.042393 2.108E-05 0.1426 7.0909E-05 0.18499 9.1989E-05 497.2629850425944 45.641 1.8842 48.995 48.205 50.089 3.3535 187 120 2 0 0 0 0.82752 5 9716 9578;9630;9668;9716;9767 10.824 4.4698 1 181670 + 2621 21512 1675 1678 3260;3261;3262;3263;3264 3263 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MSMS UPN47_class_I_Rep_2 3 497.26171875 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 44.302 1 47.658 47.158 48.158 3.3556 0 0 0 0.40292 1 9225 9225 6.7232 2.3939 1 + 2622 21512 1675 1678 3265 3265 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 497.2626647949219 2 497.262945 992.511337 0.042393 2.108E-05 0.1426 7.0909E-05 0.18499 9.1989E-05 497.2629850425944 45.641 1.8842 48.995 48.205 50.089 3.3535 187 120 2 0 0 0 0.72333 1 9539 9539 6.7232 6.7232 1 181670 + 2623 21512 1675 1678 3266 3266 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 497.7648010253906 2 497.262945 992.511337 -0.28129 -0.00013987 0.16792 8.3499E-05 -0.11337 -5.6374E-05 497.2629429770066 38.117 1.608 41.358 40.956 42.564 3.2414 280 118 4 0 0 0 0.82752 8 7282 7282;7321;7364;7402;7525;7562;7602;7650 42.095 19.358 1 861130 + 2624 21512 1675 1678 3267;3268;3269;3270;3271;3272;3273;3274 3267 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MSMS UPN47_class_I_Rep_3 4 497.26324462890625 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 46.013 1 49.257 48.757 49.757 3.2441 0 0 0 0.40292 1 9804 9804 6.7232 0.36906 1 + 2625 21512 1675 1678 3275 3275 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MSMS UPN47_class_I_Rep_3 4 497.2628479003906 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 46.162 1 49.406 48.906 49.906 3.2441 0 0 0 0.40292 1 9850 9850 6.7232 0.36906 1 + 2626 21512 1675 1678 3276 3276 0.014781313996763856 CTYRQPII 8 Unmodified _CTYRQPII_ 0 0 0 REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF REV__ENST00000244051.2_1_20:49576777-49576906:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 497.262945 992.511337 -0.0041429 -2.0601E-06 0.52062 0.00025889 0.51648 0.00025683 497.263051951193 44.794 0.16741 48.15 48.04 48.207 3.3556 0.14891 0.00041738 NaN 6.7232 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 59407 + 2627 21512 1675 1678 0.014781313996763856 CVCFYASPML 10 Unmodified _CVCFYASPML_ 0 0 0 L1MA3_dup3015|chr5:79672172-79673689:-|2.170288050096159|0.2283498470497983|3.25|150.0|108|3|anti-sense L1MA3_dup3015|chr5:79672172-79673689:-|2.170288050096159|0.2283498470497983|3.25|150.0|108|3|anti-sense L1MA3_dup3015|chr5:79672172-79673689:-|2.170288050096159|0.2283498470497983|3.25|150.0|108|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.2435302734375 2 567.245049 1132.47554 NaN NaN NaN NaN NaN NaN NaN 73.063 1 76.545 76.045 77.045 3.4812 0 0 0 0.53105 1 17193 17193 6.7232 0 1 2628 9516 1676 1679 3277 3277 -0.08539410163848515 CVCGFDHH 8 Unmodified _CVCGFDHH_ 0 0 0 nc|ENSG00000159714|Q8WTX9|ZDHHC1;ENSG00000159714|ENST00000565726|ZDHHC1 nc|ENSG00000159714|Q8WTX9|ZDHHC1 nc|ENSG00000159714|Q8WTX9|ZDHHC1 MSMS UPN48_class_I_Rep_1 5 459.1723937988281 2 459.173272 916.331992 NaN NaN NaN NaN NaN NaN NaN 75.19 1 78.689 78.189 79.189 3.4996 0 0 0 0.40738 1 17802 17802 0.79363 0 1 2629 16726 1677 1680 3278 3278 -0.129520761599224 CVCMCVCD 8 Unmodified _CVCMCVCD_ 0 0 0 L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1332702636719 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 106.98 1 106.98 106.48 107.48 0 0 0 0 0.40604 1 26097 26097 2.5775 0.27475 1 2630 11490 1678 1681 3279 3279 -0.19059764861140138 CVCMHMYIY 9 Unmodified _CVCMHMYIY_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.73046875 2 581.731251 1161.44795 0.37242 0.00021665 -0.90092 -0.00052409 -0.52849 -0.00030744 581.7307477735892 63.28 0.43283 66.639 66.392 66.825 3.3595 42 34 2 0 0 0 0.37662 1 15008 15008 9.3474 1.4373 1 47440 2631 14171 1679 1682 3280 3280 -0.12631636695732595 CVCMHMYIY 9 Unmodified _CVCMHMYIY_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7311401367188 2 581.731251 1161.44795 NaN NaN NaN NaN NaN NaN NaN 63.565 1 66.736 66.236 67.236 3.1718 0 0 0 0.381 1 15144 15144 5.2307 0 1 2632 14171 1679 1682 3281 3281 -0.12631636695732595 CVCMHMYIY 9 Unmodified _CVCMHMYIY_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|155|2|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7306518554688 2 581.731251 1161.44795 NaN NaN NaN NaN NaN NaN NaN 63.716 1 66.89 66.39 67.39 3.1741 0 0 0 0.39326 1 15189 15189 2.3027 0 1 2633 14171 1679 1682 3282 3282 -0.12631636695732595 CVCNTPKPY 9 Unmodified _CVCNTPKPY_ 0 0 0 REV__L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|77|3|anti-sense REV__L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|77|3|anti-sense MSMS UPN47_class_I_Rep_2 3 512.73193359375 2 512.733163 1023.45177 NaN NaN NaN NaN NaN NaN NaN 50.999 1 54.337 53.837 54.837 3.3386 0 0 0 0.38639 1 11259 11259 3.9444 1.0552 1 + 2634 26858 1680 1683 3283 3283 -0.05901507606006362 CVCRLVLV 8 Unmodified _CVCRLVLV_ 0 0 0 ENSG00000095752|ENST00000264563|IL11 ENSG00000095752|ENST00000264563|IL11 ENSG00000095752|ENST00000264563|IL11 MSMS UPN47_class_I_Rep_2 3 452.755859375 2 452.758984 903.503414 NaN NaN NaN NaN NaN NaN NaN 20.845 1 24.253 23.753 24.753 3.4074 0 0 0 0.40738 1 2235 2235 0.79363 0 1 2635 1417 1681 1684 3284 3284 0.047802808785490924 CVCSCFCSCFN 11 Unmodified _CVCSCFCSCFN_ 0 0 0 L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|161|1|anti-sense L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|161|1|anti-sense L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|161|1|anti-sense MSMS UPN47_class_I_Rep_2 3 405.79742431640625 3 405.796847 1214.36871 NaN NaN NaN NaN NaN NaN NaN 117.18 1 120.67 120.17 121.17 3.4891 0 0 0 0.38417 1 28628 28628 0.094841 0.094841 1 2636 14413 1682 1685 3285 3285 -0.22989651712191517 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1332702636719 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 63.736 1 63.736 63.236 64.236 0 0 0 0 0.40738 1 14322 14322 0.79363 0 1 2637 12550 1683 1686 3286 3286 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13330078125 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 89.731 1 89.731 89.231 90.231 0 0 0 0 0.40738 1 21601 21601 0.79363 0 1 2638 12550 1683 1686 3287 3287 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1330871582031 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 95.789 1 95.789 95.289 96.289 0 0 0 0 0.40738 1 23272 23272 0.79363 0 1 2639 12550 1683 1686 3288 3288 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 96.166 1 96.166 95.666 96.666 0 0 0 0 0.40738 1 23375 23375 0.79363 0 1 2640 12550 1683 1686 3289 3289 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1335754394531 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 96.29 1 96.29 95.79 96.79 0 0 0 0 0.40738 1 23410 23410 0.79363 0 1 2641 12550 1683 1686 3290 3290 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1332092285156 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 107.28 1 107.28 106.78 107.78 0 0 0 0 0.40738 1 26167 26167 0.79363 0 1 2642 12550 1683 1686 3291 3291 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_1 2 438.13336181640625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 23.23 1 26.934 26.434 27.434 3.7042 0 0 0 0.40738 1 2838 2838 0.79363 0 1 2643 12550 1683 1686 3292 3292 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_1 2 438.22467041015625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 45.73 1 49.429 48.929 49.929 3.6999 0 0 0 0.40738 1 9633 9633 0.79363 0 1 2644 12550 1683 1686 3293 3293 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_2 3 438.1338806152344 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 39.462 1 42.841 42.341 43.341 3.3785 0 0 0 0.40738 1 7753 7753 0.79363 0 1 2645 12550 1683 1686 3294 3294 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 438.1332702636719 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 22.137 1 25.486 24.986 25.986 3.3496 0 0 0 0.40738 1 2599 2599 0.79363 0 1 2646 12550 1683 1686 3295 3295 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 438.13348388671875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 52.316 1 55.522 55.022 56.022 3.2055 0 0 0 0.40738 1 11716 11716 0.79363 0 1 2647 12550 1683 1686 3296 3296 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 438.2751770019531 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 56.488 1 59.66 59.16 60.16 3.1721 0 0 0 0.40738 1 12988 12988 0.79363 0 1 2648 12550 1683 1686 3297 3297 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.1334228515625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 21.46 1 25.014 24.514 25.514 3.5533 0 0 0 0.40738 1 1964 1964 0.79363 0 1 2649 12550 1683 1686 3298 3298 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.13330078125 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 27.291 1 30.853 30.353 31.353 3.5629 0 0 0 0.40738 1 3491 3491 0.79363 0 1 2650 12550 1683 1686 3299 3299 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 27.963 1 31.52 31.02 32.02 3.5571 0 0 0 0.40738 1 3676 3676 0.79363 0 1 2651 12550 1683 1686 3300 3300 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.09686279296875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 33.741 1 37.261 36.761 37.761 3.5201 0 0 0 0.40738 1 5305 5305 0.79363 0 1 2652 12550 1683 1686 3301 3301 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.2615966796875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 43.427 1 46.938 46.438 47.438 3.5103 0 0 0 0.40738 1 8151 8151 0.79363 0 1 2653 12550 1683 1686 3302 3302 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.1334228515625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 111.43 1 115.07 114.57 115.57 3.6326 0 0 0 0.40738 1 27034 27034 0.79363 0 1 2654 12550 1683 1686 3303 3303 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_2 6 438.1332702636719 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 27.538 1 31.169 30.669 31.669 3.6311 0 0 0 0.40738 1 3663 3663 0.79363 0 1 2655 12550 1683 1686 3304 3304 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 438.1335754394531 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 25.974 1 29.74 29.24 30.24 3.7663 0 0 0 0.40738 1 3233 3233 0.79363 0 1 2656 12550 1683 1686 3305 3305 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 27.467 1 31.223 30.723 31.723 3.7555 0 0 0 0.40738 1 3609 3609 0.79363 0 1 2657 12550 1683 1686 3306 3306 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 33.282 1 36.971 36.471 37.471 3.6896 0 0 0 0.40738 1 5154 5154 0.79363 0 1 2658 12550 1683 1686 3307 3307 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 438.1332702636719 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 33.408 1 37.087 36.587 37.587 3.6797 0 0 0 0.40738 1 5190 5190 0.79363 0 1 2659 12550 1683 1686 3308 3308 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 438.133544921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 34.02 1 37.7 37.2 38.2 3.6797 0 0 0 0.40738 1 5358 5358 0.79363 0 1 2660 12550 1683 1686 3309 3309 -0.19059764861140138 CVCVCMCD 8 Unmodified _CVCVCMCD_ 0 0 0 L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense L1ME2z_dup1490|chr3:195347349-195347725:+|1.0283277804292374|0.0258670164594492|5.31|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 438.1339416503906 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 36.273 1 39.94 39.44 40.44 3.6667 0 0 0 0.40738 1 5985 5985 0.79363 0 1 2661 12550 1683 1686 3310 3310 -0.19059764861140138 CVCVCMCTYMC 11 Unmodified _CVCVCMCTYMC_ 0 0 0 REV__ENSG00000055917.16,PUM2,chr2,-,I17.1,20278820,20282946|54|13.72|2|intron REV__ENSG00000055917.16,PUM2,chr2,-,I17.1,20278820,20282946|54|13.72|2|intron MSMS UPN47_class_I_Rep_3 4 629.7010498046875 2 629.699922 1257.38529 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.11 118.61 119.61 3.462 0 0 0 0.38417 1 28446 28446 0.30703 0.30703 1 + 2662 17700 1684 1687 3311 3311 -0.23310610142084442 CVCVCMCTYMC 11 Unmodified _CVCVCMCTYMC_ 0 0 0 REV__ENSG00000055917.16,PUM2,chr2,-,I17.1,20278820,20282946|54|13.72|2|intron REV__ENSG00000055917.16,PUM2,chr2,-,I17.1,20278820,20282946|54|13.72|2|intron MSMS UPN48_class_I_Rep_3 7 629.69775390625 2 629.699922 1257.38529 NaN NaN NaN NaN NaN NaN NaN 116.72 1 120.35 119.85 120.85 3.6312 0 0 0 0.38417 1 27775 27775 0.35063 0.043601 1 + 2663 17700 1684 1687 3312 3312 -0.23310610142084442 CVELLMRLR 9 Unmodified _CVELLMRLR_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MSMS UPN47_class_I_Rep_2 3 566.7988891601562 2 566.820104 1131.62565 NaN NaN NaN NaN NaN NaN NaN 48.555 1 51.902 51.402 52.402 3.3465 0 0 0 0.39428 1 10508 10508 2.0598 0 1 + 2664 17793 1685 1688 3313 3313 0.06510697890098527 CVFPFVSMSM 10 Unmodified _CVFPFVSMSM_ 0 0 0 REV__L1PA7_dup602|chr1:180831397-180833173:-|1.032282572902376|0.2043290587394986|2.34|150.0|109|3|anti-sense REV__L1PA7_dup602|chr1:180831397-180833173:-|1.032282572902376|0.2043290587394986|2.34|150.0|109|3|anti-sense MSMS UPN47_class_I_Rep_3 4 574.2547607421875 2 574.252874 1146.49119 NaN NaN NaN NaN NaN NaN NaN 39.691 1 42.929 42.429 43.429 3.238 0 0 0 0.53105 1 7870 7870 1.6526 0.17072 1 + 2665 30143 1686 1689 3314 3314 -0.076191236467821 CVFPSHPISF 10 Unmodified _CVFPSHPISF_ 0 0 0 L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|17|1|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|17|1|anti-sense L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_2 6 567.2786254882812 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 56.909 1 60.442 59.942 60.942 3.5333 0 0 0 0.53105 1 12261 12261 9.3831 0 1 2666 12750 1687 1690 3315 3315 -0.02341599428837071 CVGQGRVL 8 Unmodified _CVGQGRVL_ 0 0 0 L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|108|1|anti-sense L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|108|1|anti-sense L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|108|1|anti-sense MSMS UPN46_class_I_Rep_3 1 416.2277526855469 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 32.334 1 32.334 31.834 32.834 0 0 0 0 0.40604 1 5518 5518 2.5775 0 1 2667 9790 1688 1691 3316 3316 0.021253065396649617 CVHFFSCHY 9 Unmodified _CVHFFSCHY_ 0 0 0 MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|5|1|sense MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|5|1|sense MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.7318725585938 2 571.730954 1141.44736 0.47275 0.00027029 2.3297 0.001332 2.8025 0.0016023 571.7320857280538 83.505 0.078972 83.505 83.479 83.558 0 11 8 2 0 0 0 0.48643 1 19844 19844 2.0598 0.21551 1 74758 2668 15828 1689 1692 3317 3317 -0.11770972028898541 CVHFPVHTL 9 Unmodified _CVHFPVHTL_ 0 0 0 REV__L1ME1_dup29117|chr19:32609129-32609874:+|1.8058525542774528|0.2955783336886247|2.61|151.0|35|2|anti-sense REV__L1ME1_dup29117|chr19:32609129-32609874:+|1.8058525542774528|0.2955783336886247|2.61|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_1 5 526.6511840820312 2 526.770937 1051.52732 NaN NaN NaN NaN NaN NaN NaN 71.398 1 74.864 74.364 75.364 3.466 0 0 0 0.38639 1 16689 16689 3.9444 1.3669 1 + 2669 27739 1690 1693 3318 3318 0.0036183763659209944 CVIPRRFRLL 10 Unmodified _CVIPRRFRLL_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|187|3|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|187|3|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|187|3|anti-sense MSMS UPN46_class_I_Rep_3 1 636.8872680664062 2 636.889709 1271.76487 NaN NaN NaN NaN NaN NaN NaN 32.936 1 32.936 32.436 33.436 0 0 0 0 0.53105 1 5700 5700 0.40072 0.050084 1 2670 11567 1691 1694 3319 3319 0.1398540356981357 CVKARLACLL 10 Unmodified _CVKARLACLL_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MULTI-MSMS UPN47_class_I_Rep_2 3 545.3167114257812 2 545.317197 1088.61984 0.46937 0.00025596 -0.057333 -3.1264E-05 0.41204 0.00022469 545.8184250097164 79.6 0.67708 82.956 82.574 83.251 3.3554 143 73 4 0 0 0 0.56309 1 19842 19842 1.6526 0.32309 1 295520 + 2671 18158 1692 1695 3320 3320 0.07907599378472696 CVKFPNIKH 9 Unmodified _CVKFPNIKH_ 0 0 0 REV__L1MB7_dup16560|chr13:28245515-28246047:-|2.423970236844133|0.0186760789692427|7.02|151.0|23|1|anti-sense REV__L1MB7_dup16560|chr13:28245515-28246047:-|2.423970236844133|0.0186760789692427|7.02|151.0|23|1|anti-sense MSMS UPN46_class_I_Rep_3 1 543.3013916015625 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 61.81 1 61.81 61.31 62.31 0 0 0 0 0.37476 1 13781 13781 6.7232 1.4925 1 + 2672 26160 1693 1696 3321 3321 0.04626099562028685 CVKKKKKKC 9 Unmodified _CVKKKKKKC_ 0 0 0 Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|101|1|anti-sense Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|101|1|anti-sense Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|101|1|anti-sense MSMS UPN48_class_I_Rep_2 6 546.8404541015625 2 546.840839 1091.66713 NaN NaN NaN NaN NaN NaN NaN 111.63 1 115.29 114.79 115.79 3.6666 0 0 0 0.4007 1 26555 26555 0.52476 0 1 2673 33047 1694 1697 3322 3322 0.12495878649451697 CVKLRLLFFI 10 Unmodified _CVKLRLLFFI_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|185|2|anti-sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|185|2|anti-sense MSMS UPN47_class_I_Rep_2 3 626.386962890625 2 626.385937 1250.75732 NaN NaN NaN NaN NaN NaN NaN 105.89 1 109.43 108.93 109.93 3.5345 0 0 0 0.53105 1 25669 25669 1.6526 0 1 + 2674 25068 1695 1698 3323 3323 0.14197251249538567 CVKLRLLFFI 10 Unmodified _CVKLRLLFFI_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|185|2|anti-sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|185|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3875732421875 2 626.385937 1250.75732 0.49471 0.00030988 2.7251 0.001707 3.2198 0.0020168 626.387662226168 105.44 0.19744 109.13 109.05 109.25 3.6901 45 27 2 0 0 0 0.56309 1 24958 24958 1.6526 0 1 572720 + 2675 25068 1695 1698 3324 3324 0.14197251249538567 CVKMHVTYT 9 Unmodified _CVKMHVTYT_ 0 0 0 L1ME4b_dup10679|chr8:129966155-129966426:-|1.8476843731355068|0.0214773018180276|6.43|151.0|6|2|sense L1ME4b_dup10679|chr8:129966155-129966426:-|1.8476843731355068|0.0214773018180276|6.43|151.0|6|2|sense L1ME4b_dup10679|chr8:129966155-129966426:-|1.8476843731355068|0.0214773018180276|6.43|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 541.2611694335938 2 541.262087 1080.50962 NaN NaN NaN NaN NaN NaN NaN 36.188 1 39.6 39.1 40.1 3.4114 0 0 0 0.37476 1 6760 6760 6.7232 1.4263 1 2676 12879 1696 1699 3325 3325 -0.027412456805905094 CVKRCTIY 8 Unmodified _CVKRCTIY_ 0 0 0 REV__nc|ENSG00000166881|O14524-2|NEMP1 REV__nc|ENSG00000166881|O14524-2|NEMP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 492.75048828125 2 493.251523 984.488493 -0.12022 -5.93E-05 1.1055 0.00054529 0.98529 0.00048599 493.25244582124964 39.822 0.093868 43.193 43.141 43.235 3.3712 7 5 2 0 0 0 0.72333 1 7876 7876 2.0598 0 1 40460 + 2677 20196 1697 1700 3326 3326 -0.004372109894461573 CVKVAVEPL 9 Unmodified _CVKVAVEPL_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS UPN46_class_I_Rep_3 1 479.27789306640625 2 479.275521 956.536489 NaN NaN NaN NaN NaN NaN NaN 76.395 1 76.395 75.895 76.895 0 0 0 0 0.38639 1 17819 17819 3.9444 0 1 + 2678 19845;32023 1698 1701 3327 3327 0.05648186202256511 CVLRRHPV 8 Unmodified _CVLRRHPV_ 0 0 0 REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3 REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3 MSMS UPN47_class_I_Rep_2 3 490.28521728515625 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 53.022 1 56.349 55.849 56.849 3.3266 0 0 0 0.40625 1 11872 11872 2.3027 0 1 + 2679 18706 1699 1702 3328 3328 0.06440365967625894 CVPHFISDPCS 11 Unmodified _CVPHFISDPCS_ 0 0 0 REV__ENST00000462770.5_1_3:133661447-133748739:-|nuORF REV__ENST00000462770.5_1_3:133661447-133748739:-|nuORF MSMS UPN47_class_I_Rep_2 3 602.76025390625 2 602.759909 1203.50526 NaN NaN NaN NaN NaN NaN NaN 38.756 1 42.134 41.634 42.634 3.3785 0 0 0 0.38417 1 7538 7538 1.3295 0.25807 1 + 2680 20530 1700 1703 3329 3329 -0.08834754894132857 CVRGHKRYL 9 Unmodified _CVRGHKRYL_ 0 0 0 REV__MSTA_dup10730|chr9:92449573-92449946:+|1.1422970443104776|0.0071927722054809|7.31|151.0|15|1|anti-sense REV__MSTA_dup10730|chr9:92449573-92449946:+|1.1422970443104776|0.0071927722054809|7.31|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 566.2916870117188 2 566.313835 1130.61312 NaN NaN NaN NaN NaN NaN NaN 71.614 1 74.989 74.489 75.489 3.3751 0 0 0 0.39428 1 17472 17472 2.0598 0.21551 1 + 2681 31839 1701 1704 3330 3330 0.05303422542078806 CVRHLYYP 8 Unmodified _CVRHLYYP_ 0 0 0 REV__MER51A_dup485|chrX:19640618-19641158:+|1.1068638513188322|0.0072509110181604|7.25|151.0|10|2|sense REV__MER51A_dup485|chrX:19640618-19641158:+|1.1068638513188322|0.0072509110181604|7.25|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 525.2908935546875 2 525.763112 1049.51167 NaN NaN NaN NaN NaN NaN NaN 31.709 1 35.008 34.508 35.508 3.2991 0 0 0 0.40738 1 5439 5439 0.79363 0 1 + 2682 31393 1702 1705 3331 3331 -0.011104488804676294 CVRPRPRLLAP 11 Unmodified _CVRPRPRLLAP_ 0 0 0 ENST00000301618.8_1_17:74865029-74878335:+|nuORF ENST00000301618.8_1_17:74865029-74878335:+|nuORF ENST00000301618.8_1_17:74865029-74878335:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 427.2643737792969 3 426.592286 1276.75503 -0.069386 -2.9599E-05 0.48703 0.00020776 0.41764 0.00017816 426.59240016343875 53.627 0.64367 57.141 56.579 57.223 3.5143 62 46 2 0 0 0 22.551 1 11185 11185 1.2148 1.2148 1 119520 2683 6075 1703 1706 3332 3332 0.12772215564450562 CVSYSTLKTL 10 Unmodified _CVSYSTLKTL_ 0 0 0 HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|59|1|anti-sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|59|1|anti-sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|59|1|anti-sense MSMS UPN47_class_I_Rep_2 3 557.7962646484375 2 557.794275 1113.574 NaN NaN NaN NaN NaN NaN NaN 64.836 1 68.091 67.591 68.591 3.2556 0 0 0 0.53105 1 15473 15473 2.7352 0.15772 1 2684 7917 1704 1707 3333 3333 0.021752326772229935 CVTSVPYSVVR 11 Unmodified _CVTSVPYSVVR_ 0 0 0 REV__ENST00000261441.9_2_1:114308358-114308481:-|nuORF REV__ENST00000261441.9_2_1:114308358-114308481:-|nuORF MSMS UPN48_class_I_Rep_3 7 605.2944946289062 2 605.318448 1208.62234 NaN NaN NaN NaN NaN NaN NaN 47.189 1 50.826 50.326 51.326 3.6363 0 0 0 0.38417 1 9237 9237 2.7352 0 1 + 2685 21559 1705 1708 3334 3334 0.026377263170843435 CVWHLCGYQW 10 Unmodified _CVWHLCGYQW_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|69|2|sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|69|2|sense MSMS UPN47_class_I_Rep_3 4 647.777099609375 2 647.778436 1293.54232 NaN NaN NaN NaN NaN NaN NaN 41.964 1 45.204 44.704 45.704 3.2394 0 0 0 0.53105 1 8563 8563 1.6526 0.17072 1 + 2686 31507 1706 1709 3335 3335 -0.0927103855774476 CVYCWVSWND 10 Unmodified _CVYCWVSWND_ 0 0 0 REV__nc|ENSG00000156256|Q9Y5T5-5|USP16 REV__nc|ENSG00000156256|Q9Y5T5-5|USP16 MULTI-MSMS UPN47_class_I_Rep_2 3 637.7516479492188 2 637.752084 1273.48961 0.48867 0.00031165 -0.73569 -0.00046919 -0.24702 -0.00015754 637.7514079488562 60.201 0.6231 63.474 63.195 63.818 3.2731 53 38 2 0 0 0 0.56033 1 14079 14079 3.5965 0.31518 1 100590 + 2687 19790 1707 1710 3336 3336 -0.1361904141119794 CVYFLTQQF 9 Unmodified _CVYFLTQQF_ 0 0 0 L1ME4b_dup11196|chr9:77906255-77906534:+|1.2745119515366832|0.0088549052363763|7.17|151.0|2|1|sense L1ME4b_dup11196|chr9:77906255-77906534:+|1.2745119515366832|0.0088549052363763|7.17|151.0|2|1|sense L1ME4b_dup11196|chr9:77906255-77906534:+|1.2745119515366832|0.0088549052363763|7.17|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.774169921875 2 574.775885 1147.53722 0.048045 2.7615E-05 -0.41225 -0.00023695 -0.3642 -0.00020934 574.775632670618 16.782 0.5549 20.169 19.949 20.504 3.3864 106 63 2 0 0 0 0.47493 1 1190 1190 3.2813 0 1 42880 2688 12881 1708 1711 3337 3337 -0.030650191487211487 CVYVSGRP 8 Unmodified _CVYVSGRP_ 0 0 0 REV__L1M4_dup13246|chr10:92664211-92664682:-|1.4056654109105022|0.0144989507496144|6.6|151.0|19|1|anti-sense REV__L1M4_dup13246|chr10:92664211-92664682:-|1.4056654109105022|0.0144989507496144|6.6|151.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 440.7997131347656 2 440.720913 879.427273 NaN NaN NaN NaN NaN NaN NaN 32.107 1 32.107 31.607 32.607 0 0 0 0 0.40472 1 5452 5452 4.3292 1.44 1 + 2689 24362 1709 1712 3338 3338 -0.0172639969721331 CVYWMPLID 9 Unmodified _CVYWMPLID_ 0 0 0 REV__L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|36|1|anti-sense REV__L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.8062744140625 2 570.266838 1138.51912 0.33139 0.00018898 1.1357 0.00064767 1.4671 0.00083666 570.7692385241215 68.342 0.085045 71.707 71.675 71.76 3.3646 9 6 2 0 0 0 0.48643 1 16506 16506 2.0598 0 1 39220 + 2690 25725 1710 1713 3339 3339 -0.04459477395062095 CWAHPLNSIVP 11 Unmodified _CWAHPLNSIVP_ 0 0 0 REV__ENST00000367261.7_1_1:202861310-202861439:-|nuORF REV__ENST00000367261.7_1_1:202861310-202861439:-|nuORF MSMS UPN48_class_I_Rep_1 5 618.8114624023438 2 618.813333 1235.61211 NaN NaN NaN NaN NaN NaN NaN 62.993 1 66.455 65.955 66.955 3.4625 0 0 0 0.38417 1 14144 14144 2.7352 0.89096 1 + 2691 21925 1711 1714 3340 3340 0.003731633825282188 CWANYTDL 8 Unmodified _CWANYTDL_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS UPN47_class_I_Rep_1 2 493.2098388671875 2 493.207835 984.401117 NaN NaN NaN NaN NaN NaN NaN 119.91 1 123.51 123.01 124.01 3.6036 0 0 0 0.40604 1 29816 29816 2.5775 0.27475 1 2692 5549 1712 1715 3341 3341 -0.09170713659364083 CWCNSGRAQCH 11 Unmodified _CWCNSGRAQCH_ 0 0 0 nc|ENSG00000104368|P00750-2|PLAT;ENSG00000104368|ENST00000220809|PLAT nc|ENSG00000104368|P00750-2|PLAT nc|ENSG00000104368|P00750-2|PLAT MSMS UPN48_class_I_Rep_2 6 632.7412109375 2 632.742059 1263.46956 NaN NaN NaN NaN NaN NaN NaN 19.022 1 22.673 22.173 23.173 3.6509 0 0 0 0.38417 1 1376 1376 1.0715 0.46996 1 2693 1687 1713 1716 3342 3342 -0.15163115622772239 CWCTNLLC 8 Unmodified _CWCTNLLC_ 0 0 0 Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|22|3|sense Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|22|3|sense Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|22|3|sense MSMS UPN48_class_I_Rep_3 7 478.2620849609375 2 478.195359 954.376165 NaN NaN NaN NaN NaN NaN NaN 34.905 1 38.578 38.078 39.078 3.6721 0 0 0 0.40643 1 5596 5596 2.0598 0 1 2694 33407 1714 1717 3343 3343 -0.10284808057951977 CWDTLGLR 8 Unmodified _CWDTLGLR_ 0 0 0 MER21A_dup1562|chr15:65561600-65562487:-|1.1127788911857253|0.1958282490467104|2.51|151.0|2|1|sense MER21A_dup1562|chr15:65561600-65562487:-|1.1127788911857253|0.1958282490467104|2.51|151.0|2|1|sense MER21A_dup1562|chr15:65561600-65562487:-|1.1127788911857253|0.1958282490467104|2.51|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 482.2410583496094 2 482.23947 962.464386 NaN NaN NaN NaN NaN NaN NaN 56.906 1 60.4 59.9 60.9 3.4942 0 0 0 0.40659 1 12284 12284 1.8442 0 1 2695 15850 1715 1718 3344 3344 -0.01834728151447962 CWFHHRFN 8 Unmodified _CWFHHRFN_ 0 0 0 ENST00000534096.5_1_19:50838046-50848012:-|nuORF ENST00000534096.5_1_19:50838046-50848012:-|nuORF ENST00000534096.5_1_19:50838046-50848012:-|nuORF MSMS UPN48_class_I_Rep_3 7 573.81689453125 2 573.756153 1145.49775 NaN NaN NaN NaN NaN NaN NaN 22.476 1 26.19 25.69 26.69 3.7144 0 0 0 0.40738 1 2299 2299 0.79363 0.10326 1 2696 7316 1716 1719 3345 3345 -0.06917681588902269 CWFRFWRC 8 Unmodified _CWFRFWRC_ 0 0 0 REV__ENST00000602980.1_1_7:29725056-29725440:+|nuORF REV__ENST00000602980.1_1_7:29725056-29725440:+|nuORF MSMS UPN47_class_I_Rep_3 4 602.2683715820312 2 602.270581 1202.52661 NaN NaN NaN NaN NaN NaN NaN 27.645 1 30.988 30.488 31.488 3.3422 0 0 0 0.40746 1 4226 4226 0.69038 0 1 + 2697 23219 1717 1720 3346 3346 -0.06655280284098808 CWHEYCCQECY 11 Unmodified _CWHEYCCQECY_ 0 0 0 REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|40|2|anti-sense REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|40|2|anti-sense MSMS UPN46_class_I_Rep_3 1 489.49224853515625 3 489.492593 1465.45595 NaN NaN NaN NaN NaN NaN NaN 28.388 1 28.388 27.888 28.888 0 0 0 0 0.38417 1 4351 4351 0 0 1 + 2698 25949 1718 1721 3347 3347 -0.2581615423689527 CWICGWDCC 9 Unmodified _CWICGWDCC_ 0 0 0 L1ME1_dup11423|chr6:37974960-37976257:-|2.378853172626077|0.0156845884651138|7.24|151.0|72|2|anti-sense L1ME1_dup11423|chr6:37974960-37976257:-|2.378853172626077|0.0156845884651138|7.24|151.0|72|2|anti-sense L1ME1_dup11423|chr6:37974960-37976257:-|2.378853172626077|0.0156845884651138|7.24|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_1 2 544.6746826171875 2 544.676476 1087.3384 NaN NaN NaN NaN NaN NaN NaN 119.26 1 122.86 122.36 123.36 3.6036 0 0 0 0.40038 1 29628 29628 0.6015 0.14316 1 2699 12179 1719 1722 3348 3348 -0.20177642315070443 CWIHFASY 8 Unmodified _CWIHFASY_ 0 0 0 L1M2_dup3171|chr5:179987469-179988973:-|15.046427911454556|0.2670120186297554|5.82|151.0|80|3|anti-sense L1M2_dup3171|chr5:179987469-179988973:-|15.046427911454556|0.2670120186297554|5.82|151.0|80|3|anti-sense L1M2_dup3171|chr5:179987469-179988973:-|15.046427911454556|0.2670120186297554|5.82|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 513.2709350585938 2 513.728738 1025.44292 NaN NaN NaN NaN NaN NaN NaN 32.747 1 36.201 35.701 36.701 3.4547 0 0 0 0.40604 1 5713 5713 2.5775 0 1 2700 8677 1720 1723 3349 3349 -0.06878113180164291 CWIINWTN 8 Unmodified _CWIINWTN_ 0 0 0 Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|103|1|anti-sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|103|1|anti-sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|103|1|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2457275390625 2 525.247295 1048.48004 NaN NaN NaN NaN NaN NaN NaN 20.335 1 23.947 23.447 24.447 3.6118 0 0 0 0.40625 1 2022 2022 2.3027 0 1 2701 33197 1721 1724 3350 3350 -0.042264416343869016 CWIMWWIYYE 10 Unmodified _CWIMWWIYYE_ 0 0 0 L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|93|3|anti-sense L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|93|3|anti-sense L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_2 6 498.2199401855469 3 498.219127 1491.63555 NaN NaN NaN NaN NaN NaN NaN 30.583 1 34.218 33.718 34.718 3.6351 0 0 0 0.53105 1 4495 4495 0.15932 0 1 2702 9749 1722 1725 3351 3351 -0.09060158895135828 CWKPLQVGF 9 Unmodified _CWKPLQVGF_ 0 0 0 HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|108|1|anti-sense HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|108|1|anti-sense HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|108|1|anti-sense MSMS UPN47_class_I_Rep_2 3 539.2818603515625 2 539.281137 1076.54772 NaN NaN NaN NaN NaN NaN NaN 73.515 1 76.82 76.32 77.32 3.3048 0 0 0 0.36505 1 18080 18080 7.2892 1.9923 1 2703 7946 1723 1726 3352 3352 0.01251008296389955 CWLDCILSAL 10 Unmodified _CWLDCILSAL_ 0 0 0 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 MSMS UPN47_class_I_Rep_3 4 568.7781982421875 2 568.77757 1135.54059 NaN NaN NaN NaN NaN NaN NaN 65.409 1 68.588 68.088 69.088 3.1795 0 0 0 0.53105 1 15707 15707 5.7319 0.50118 1 2704 2784 1724 1727 3353 3353 -0.02176092366357807 CWLIHVMF 8 Unmodified _CWLIHVMF_ 0 0 0 REV__L1MEc_dup15139|chr14:71013612-71015523:+|2.7000411285334693|0.1725456156860152|3.97|151.0|9|1|sense REV__L1MEc_dup15139|chr14:71013612-71015523:+|2.7000411285334693|0.1725456156860152|3.97|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 524.759765625 2 524.758984 1047.50341 NaN NaN NaN NaN NaN NaN NaN 118.83 1 118.83 118.33 119.33 0 0 0 0 0.40738 1 29511 29511 0.79363 0 1 + 2705 28387 1725 1728 3354 3354 -0.018437191214388804 CWLIIVNL 8 Unmodified _CWLIIVNL_ 0 0 0 ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|24|1|sense ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|24|1|sense ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|24|1|sense MSMS UPN47_class_I_Rep_1 2 487.28271484375 2 487.280606 972.546659 NaN NaN NaN NaN NaN NaN NaN 74.465 1 77.858 77.358 78.358 3.3937 0 0 0 0.39624 1 18328 18328 9.3474 0 1 2706 7746 1726 1729 3355 3355 0.059287939275009194 CWLRGWVY 8 Unmodified _CWLRGWVY_ 0 0 0 L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|45|1|anti-sense L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|45|1|anti-sense L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|45|1|anti-sense MSMS UPN47_class_I_Rep_3 4 541.763671875 2 541.765655 1081.51676 NaN NaN NaN NaN NaN NaN NaN 28.988 1 32.311 31.811 32.811 3.3235 0 0 0 0.40581 1 4623 4623 2.8892 0.82947 1 2707 12545 1727 1730 3356 3356 -0.020741450178547893 CWMFITLW 8 Unmodified _CWMFITLW_ 0 0 0 REV__L1MC1_dup10154|chr13:40995473-40996534:+|5.439615692944574|0.095685166384285|5.83|151.0|73|3|anti-sense REV__L1MC1_dup10154|chr13:40995473-40996534:+|5.439615692944574|0.095685166384285|5.83|151.0|73|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2586669921875 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 79.471 1 79.471 78.971 79.971 0 0 0 0 0.40738 1 18670 18670 0.79363 0 1 + 2708 26487 1728 1731 3357 3357 -0.04223138841302898 CWPFGYLLL 9 Unmodified _CWPFGYLLL_ 0 0 0 L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|91|2|anti-sense L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|91|2|anti-sense L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|91|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2847290039062 2 556.285889 1110.55722 NaN NaN NaN NaN NaN NaN NaN 60.52 1 63.902 63.402 64.402 3.3815 0 0 0 0.39326 1 14130 14130 2.3027 0.4585 1 2709 10974 1729 1732 3358 3358 0.006367765819277338 CWPHFMLP 8 Unmodified _CWPHFMLP_ 0 0 0 ENST00000473180.1_1_20:11902264-11903403:+|nuORF ENST00000473180.1_1_20:11902264-11903403:+|nuORF ENST00000473180.1_1_20:11902264-11903403:+|nuORF MSMS UPN48_class_I_Rep_3 7 515.8562622070312 2 515.735509 1029.45646 NaN NaN NaN NaN NaN NaN NaN 30.523 1 34.238 33.738 34.738 3.7146 0 0 0 0.40581 1 4414 4414 2.8892 0.58649 1 2710 6939 1730 1733 3359 3359 -0.057085786725792786 CWPRRRND 8 Unmodified _CWPRRRND_ 0 0 0 REV__nc|ENSG00000122861|P00749-2|PLAU REV__nc|ENSG00000122861|P00749-2|PLAU MSMS UPN48_class_I_Rep_1 5 551.7705688476562 2 551.769791 1101.52503 NaN NaN NaN NaN NaN NaN NaN 38.743 1 42.248 41.748 42.748 3.5048 0 0 0 0.40625 1 6752 6752 2.3027 0 1 + 2711 18763 1731 1734 3360 3360 -0.021671980485280073 CWRILWVYF 9 Unmodified _CWRILWVYF_ 0 0 0 L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|109|2|anti-sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|109|2|anti-sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|109|2|anti-sense MSMS UPN46_class_I_Rep_3 1 643.3340454101562 2 643.331162 1284.64777 NaN NaN NaN NaN NaN NaN NaN 42.199 1 42.199 41.699 42.699 0 0 0 0 0.40038 1 8336 8336 0.6015 0.076735 1 2712 11323 1732 1735 3361 3361 0.016832456301699494 CWRQFVFH 8 Unmodified _CWRQFVFH_ 0 0 0 REV__ENST00000547187.5_2_12:50135837-50138293:+|nuORF REV__ENST00000547187.5_2_12:50135837-50138293:+|nuORF MSMS UPN48_class_I_Rep_1 5 561.2896118164062 2 561.768729 1121.5229 NaN NaN NaN NaN NaN NaN NaN 46.56 1 50.079 49.579 50.579 3.5192 0 0 0 0.40404 1 9104 9104 5.2307 0 1 + 2713 22941 1733 1736 3362 3362 -0.03299626786315457 CWRQFVFH 8 Unmodified _CWRQFVFH_ 0 0 0 REV__ENST00000547187.5_2_12:50135837-50138293:+|nuORF REV__ENST00000547187.5_2_12:50135837-50138293:+|nuORF MSMS UPN48_class_I_Rep_3 7 561.76953125 2 561.768729 1121.5229 NaN NaN NaN NaN NaN NaN NaN 46.53 1 50.166 49.666 50.666 3.6363 0 0 0 0.40625 1 9034 9034 2.3027 0 1 + 2714 22941 1733 1736 3363 3363 -0.03299626786315457 CWVECLCM 8 Unmodified _CWVECLCM_ 0 0 0 L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|83|3|anti-sense L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|83|3|anti-sense L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|83|3|anti-sense MSMS UPN46_class_I_Rep_3 1 493.55859375 2 493.68377 985.352987 NaN NaN NaN NaN NaN NaN NaN 58.935 1 58.935 58.435 59.435 0 0 0 0 0.40738 1 12999 12999 0.79363 0 1 2715 9043 1734 1737 3364 3364 -0.14027570166933856 CWVFCERF 8 Unmodified _CWVFCERF_ 0 0 0 HAL1_dup20116|chr17:9288707-9289493:+|1.0418250385423171|0.0074498622731626|7.13|151.0|46|2|anti-sense HAL1_dup20116|chr17:9288707-9289493:+|1.0418250385423171|0.0074498622731626|7.13|151.0|46|2|anti-sense HAL1_dup20116|chr17:9288707-9289493:+|1.0418250385423171|0.0074498622731626|7.13|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_2 3 545.2337646484375 2 545.235873 1088.45719 NaN NaN NaN NaN NaN NaN NaN 30.717 1 34.199 33.699 34.699 3.4821 0 0 0 0.40604 1 5102 5102 2.5775 0.92486 1 2716 7858 1735 1738 3365 3365 -0.08349784023539542 CWVIKMTVK 9 Unmodified _CWVIKMTVK_ 0 0 0 Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|54|2|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|54|2|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3062133789062 2 554.306298 1106.59804 -0.0092169 -5.109E-06 -1.3446 -0.00074534 -1.3539 -0.00075045 554.3055251676403 38.322 0.64388 41.987 41.78 42.424 3.6652 91 47 3 0 0 0 0.49026 1 7327 7327 1.6526 0.17072 1 90827 2717 33444 1736 1739 3366 3366 0.04900794629884331 CWWAWTIK 8 Unmodified _CWWAWTIK_ 0 0 0 REV__AluSx_dup70513|chr11:47536477-47536782:+|1.2008603294672118|0.0102830897526349|6.87|151.0|2|1|sense REV__AluSx_dup70513|chr11:47536477-47536782:+|1.2008603294672118|0.0102830897526349|6.87|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 547.2794799804688 2 547.26803 1092.52151 NaN NaN NaN NaN NaN NaN NaN 21.547 1 24.896 24.396 25.396 3.3496 0 0 0 0.40738 1 2429 2429 0.79363 0.10326 1 + 2718 16968 1737 1740 3367 3367 -0.02105260875100612 CWWECCVH 8 Unmodified _CWWECCVH_ 0 0 0 ENST00000509294.1_1_5:470082-471349:+|nuORF;ENST00000515601.6_1_5:471214-471349:+|nuORF ENST00000509294.1_1_5:470082-471349:+|nuORF ENST00000509294.1_1_5:470082-471349:+|nuORF MSMS UPN46_class_I_Rep_3 1 533.2755126953125 2 533.190608 1064.36666 NaN NaN NaN NaN NaN NaN NaN 49.88 1 49.88 49.38 50.38 0 0 0 0 0.40746 1 10504 10504 0.69038 0.088878 1 2719 7170 1738 1741 3368 3368 -0.16294576343443623 CWWLLGPYDR 10 Unmodified _CWWLLGPYDR_ 0 0 0 REV__MLT1D_dup13699|chr11:66610140-66610650:-|1.351841837087684|0.4426537129493796|1.61|151.0|13|3|sense REV__MLT1D_dup13699|chr11:66610140-66610650:-|1.351841837087684|0.4426537129493796|1.61|151.0|13|3|sense MSMS UPN48_class_I_Rep_1 5 436.8793029785156 3 436.877981 1307.61211 NaN NaN NaN NaN NaN NaN NaN 85.956 1 89.569 89.069 90.069 3.613 0 0 0 0.53105 1 20581 20581 0.77653 0 1 + 2720 31665 1739 1742 3369 3369 -0.029388366174771363 CWWLLGPYDR 10 Unmodified _CWWLLGPYDR_ 0 0 0 REV__MLT1D_dup13699|chr11:66610140-66610650:-|1.351841837087684|0.4426537129493796|1.61|151.0|13|3|sense REV__MLT1D_dup13699|chr11:66610140-66610650:-|1.351841837087684|0.4426537129493796|1.61|151.0|13|3|sense MSMS UPN48_class_I_Rep_2 6 436.87945556640625 3 436.877981 1307.61211 NaN NaN NaN NaN NaN NaN NaN 113.89 1 117.56 117.06 118.06 3.663 0 0 0 0.53105 1 27198 27198 0.15932 0 1 + 2721 31665 1739 1742 3370 3370 -0.029388366174771363 CYCNCFLY 8 Unmodified _CYCNCFLY_ 0 0 0 REV__LTR6A_dup91|chr9:62810354-62810882:+|2.560728124751358|0.0733316041245042|5.13|149.0|18|3|sense REV__LTR6A_dup91|chr9:62810354-62810882:+|2.560728124751358|0.0733316041245042|5.13|149.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 514.7788696289062 2 514.687367 1027.36018 NaN NaN NaN NaN NaN NaN NaN 73.227 1 76.765 76.265 77.265 3.5373 0 0 0 0.40581 1 17123 17123 2.8892 0 1 + 2722 30991 1740 1743 3371 3371 -0.15240514294828245 CYDFTYMWN 9 Unmodified _CYDFTYMWN_ 0 0 0 L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|22|2|sense L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|22|2|sense L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 621.7319946289062 2 621.73336 1241.45217 NaN NaN NaN NaN NaN NaN NaN 111.98 1 115.64 115.14 116.14 3.6666 0 0 0 0.39428 1 26653 26653 2.0598 0.73022 1 2723 10036 1741 1744 3372 3372 -0.1589013267680457 CYEDLFMLYLL 11 Unmodified _CYEDLFMLYLL_ 0 0 0 L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|122|1|anti-sense L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|122|1|anti-sense L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|122|1|anti-sense MSMS UPN46_class_I_Rep_3 1 475.3123474121094 3 474.894309 1421.6611 NaN NaN NaN NaN NaN NaN NaN 20.288 1 20.288 19.788 20.788 0 0 0 0 0.38417 1 2082 2082 0.45452 0.046251 1 2724 9788 1742 1745 3373 3373 -0.03286729163369273 CYFRTFAF 8 Unmodified _CYFRTFAF_ 0 0 0 L1MC2_dup485|chr2:24716165-24717812:+|1.9701503045813489|0.0751195100045307|4.71|151.0|123|3|anti-sense L1MC2_dup485|chr2:24716165-24717812:+|1.9701503045813489|0.0751195100045307|4.71|151.0|123|3|anti-sense L1MC2_dup485|chr2:24716165-24717812:+|1.9701503045813489|0.0751195100045307|4.71|151.0|123|3|anti-sense MSMS UPN46_class_I_Rep_3 1 527.74609375 2 527.744388 1053.47422 NaN NaN NaN NaN NaN NaN NaN 80.439 1 80.439 79.939 80.939 0 0 0 0 0.40604 1 18948 18948 2.5775 0.27475 1 2725 11267 1743 1746 3374 3374 -0.05037540146099673 CYGFCRPI 8 Unmodified _CYGFCRPI_ 0 0 0 REV__L1P3_dup683|chr3:196910645-196911430:+|4.305581187898107|0.1751706076293844|4.62|151.0|48|3|anti-sense REV__L1P3_dup683|chr3:196910645-196911430:+|4.305581187898107|0.1751706076293844|4.62|151.0|48|3|anti-sense MSMS UPN46_class_I_Rep_3 1 479.74945068359375 2 479.717316 957.420079 NaN NaN NaN NaN NaN NaN NaN 115.93 1 115.93 115.43 116.43 0 0 0 0 0.40738 1 28683 28683 0.79363 0 1 + 2726 28899 1744 1747 3375 3375 -0.06033455569308899 CYIGECNYSD 10 Unmodified _CYIGECNYSD_ 0 0 0 HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|95|3|sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|95|3|sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|95|3|sense MSMS UPN47_class_I_Rep_3 4 583.7099609375 2 583.710082 1165.40561 NaN NaN NaN NaN NaN NaN NaN 22.867 1 26.217 25.717 26.717 3.3503 0 0 0 0.53105 1 2809 2809 3.5965 1.2938 1 2727 8108 1745 1748 3376 3376 -0.17047617298794648 CYLDSCFYM 9 Unmodified _CYLDSCFYM_ 0 0 0 REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|109|1|anti-sense REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|109|1|anti-sense MSMS UPN48_class_I_Rep_2 6 572.6981201171875 2 572.711039 1143.40752 NaN NaN NaN NaN NaN NaN NaN 20.343 1 23.991 23.491 24.491 3.648 0 0 0 0.39428 1 1729 1729 2.0598 0 1 + 2728 25184 1746 1749 3377 3377 -0.15844279814518814 CYLLFIFER 9 Unmodified _CYLLFIFER_ 0 0 0 L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|83|1|anti-sense L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|83|1|anti-sense L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|83|1|anti-sense MSMS UPN47_class_I_Rep_1 2 401.8780212402344 3 401.87921 1202.6158 NaN NaN NaN NaN NaN NaN NaN 15.936 1 19.433 18.933 19.933 3.4968 0 0 0 0.40038 1 936 936 0.26902 0 1 2729 10033 1747 1750 3378 3378 0.02259833156381319 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_1 2 516.8058471679688 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 94.053 1 97.789 97.289 98.289 3.736 0 0 0 0.40738 1 23378 23378 0.79363 0.10326 1 + 2730 32538 1748 1751 3379 3379 0.08047287567364947 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.8059692382812 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 103.05 1 106.57 106.07 107.07 3.5231 0 0 0 0.40738 1 25063 25063 0.79363 0.79363 1 + 2731 32538 1748 1751 3380 3380 0.08047287567364947 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.8060302734375 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 87.805 1 91.192 90.692 91.692 3.3873 0 0 0 0.40738 1 22013 22013 0.79363 0.10326 1 + 2732 32538 1748 1751 3381 3381 0.08047287567364947 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.816162109375 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 94.472 1 97.879 97.379 98.379 3.4068 0 0 0 0.40738 1 23512 23512 0.79363 0.79363 1 + 2733 32538 1748 1751 3382 3382 0.08047287567364947 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.805419921875 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 94.921 1 98.328 97.828 98.828 3.4068 0 0 0 0.40738 1 23611 23611 0.79363 0.10326 1 + 2734 32538 1748 1751 3383 3383 0.08047287567364947 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.805908203125 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 102.57 1 106.06 105.56 106.56 3.49 0 0 0 0.40738 1 25207 25207 0.79363 0.10326 1 + 2735 32538 1748 1751 3384 3384 0.08047287567364947 CYLLKKHK 8 Unmodified _CYLLKKHK_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|101|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.8065185546875 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 102.8 1 106.3 105.8 106.8 3.5057 0 0 0 0.40738 1 25251 25251 0.79363 0.10326 1 + 2736 32538 1748 1751 3385 3385 0.08047287567364947 CYMCYTFSLH 10 Unmodified _CYMCYTFSLH_ 0 0 0 L1ME4c_dup3739|chr7:65885190-65886012:-|1.0267941734194983|0.0361330253363223|4.83|151.0|32|1|anti-sense L1ME4c_dup3739|chr7:65885190-65886012:-|1.0267941734194983|0.0361330253363223|4.83|151.0|32|1|anti-sense L1ME4c_dup3739|chr7:65885190-65886012:-|1.0267941734194983|0.0361330253363223|4.83|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_1 2 634.2510375976562 2 634.250862 1266.48717 NaN NaN NaN NaN NaN NaN NaN 85.441 1 89.033 88.533 89.533 3.5914 0 0 0 0.53105 1 21336 21336 0.40072 0 1 2737 12952 1749 1752 3386 3386 -0.13541213140524633 CYMHRMYT 8 Unmodified _CYMHRMYT_ 0 0 0 L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|44|2|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|44|2|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7250366210938 2 552.724815 1103.43508 NaN NaN NaN NaN NaN NaN NaN 71.077 1 74.36 73.86 74.86 3.2828 0 0 0 0.40738 1 17352 17352 0.79363 0 1 2738 9804 1750 1753 3387 3387 -0.11250331763608301 CYNGMCQYY 9 Unmodified _CYNGMCQYY_ 0 0 0 ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9 ENSG00000168615|ENST00000487273|ADAM9 ENSG00000168615|ENST00000487273|ADAM9 MSMS UPN47_class_I_Rep_3 4 572.6957397460938 2 572.698463 1143.38237 NaN NaN NaN NaN NaN NaN NaN 36.056 1 39.311 38.811 39.811 3.2547 0 0 0 0.40038 1 6753 6753 0.6015 0 1 2739 4383 1751 1754 3388 3388 -0.18358334617073524 CYPIFFFW 8 Unmodified _CYPIFFFW_ 0 0 0 L1M4c_dup209|chr1:244400763-244401467:-|1.2876071586505955|0.018053951591971|6.16|151.0|39|2|anti-sense L1M4c_dup209|chr1:244400763-244401467:-|1.2876071586505955|0.018053951591971|6.16|151.0|39|2|anti-sense L1M4c_dup209|chr1:244400763-244401467:-|1.2876071586505955|0.018053951591971|6.16|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_3 4 561.762451171875 2 561.759507 1121.50446 NaN NaN NaN NaN NaN NaN NaN 70.629 1 73.84 73.34 74.34 3.2113 0 0 0 0.40581 1 17289 17289 2.8892 0.58649 1 2740 9046 1752 1755 3389 3389 -0.05143181480889325 CYQTEKQLQR 10 Unmodified _CYQTEKQLQR_ 0 0 0 Tigger1_dup160|chr1:40726716-40727195:-|1.128947268364918|0.0266726836357405|5.4|151.0|15|3|sense Tigger1_dup160|chr1:40726716-40727195:-|1.128947268364918|0.0266726836357405|5.4|151.0|15|3|sense Tigger1_dup160|chr1:40726716-40727195:-|1.128947268364918|0.0266726836357405|5.4|151.0|15|3|sense MSMS UPN48_class_I_Rep_3 7 432.8851623535156 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 97.346 1 101.25 100.75 101.75 3.9084 0 0 0 0.53105 1 23074 23074 0.69767 0 1 2741 33038 1753 1756 3390 3390 -0.006769608023205365 CYRCPAVV 8 Unmodified _CYRCPAVV_ 0 0 0 REV__MLT1A0-int_dup515|chr8:120684955-120686267:-|1.660840806194272|0.0442254218825457|5.23|151.0|56|2|anti-sense REV__MLT1A0-int_dup515|chr8:120684955-120686267:-|1.660840806194272|0.0442254218825457|5.23|151.0|56|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 455.7164611816406 2 455.717316 909.420079 -0.12094 -5.5114E-05 -1.0117 -0.00046106 -1.1327 -0.00051618 455.7164758066606 27.267 0.066275 27.267 27.235 27.301 0 6 4 2 0 0 0 0.82752 1 4029 4029 0.79363 0 1 22435 + 2742 31605 1754 1757 3391 3391 -0.03825455569301539 CYRDGQKLCS 10 Unmodified _CYRDGQKLCS_ 0 0 0 REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|205|1|anti-sense REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|205|1|anti-sense MSMS UPN48_class_I_Rep_2 6 586.7973022460938 2 586.762983 1171.51141 NaN NaN NaN NaN NaN NaN NaN 23.965 1 27.605 27.105 28.105 3.6397 0 0 0 0.53105 1 2704 2704 2.9952 0 1 + 2743 24269 1755 1758 3392 3392 -0.06748236662610907 CYRLISEQRE 10 Unmodified _CYRLISEQRE_ 0 0 0 REV__L1MC4_dup18746|chr13:75598142-75598872:-|1.0729046775157|0.3154235120043561|1.77|151.0|24|3|sense REV__L1MC4_dup18746|chr13:75598142-75598872:-|1.0729046775157|0.3154235120043561|1.77|151.0|24|3|sense MSMS UPN48_class_I_Rep_2 6 432.88507080078125 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 100.76 1 104.5 104 105 3.7417 0 0 0 0.53105 1 23922 23922 0.50596 0 1 + 2744 26846 1756 1759 3393 3393 -0.006769608022977991 CYRQNRFP 8 Unmodified _CYRQNRFP_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS UPN47_class_I_Rep_2 3 542.2614135742188 2 542.261268 1082.50798 NaN NaN NaN NaN NaN NaN NaN 36.58 1 39.978 39.478 40.478 3.3988 0 0 0 0.40746 1 6877 6877 0.69038 0 1 2745 1486 1757 1760 3394 3394 -0.029971186543207295 CYSPPLMF 8 Unmodified _CYSPPLMF_ 0 0 0 REV__L1ME3B_dup566|chr1:243296966-243298048:-|3.234059321603815|0.0749973593777515|5.43|151.0|43|1|anti-sense REV__L1ME3B_dup566|chr1:243296966-243298048:-|3.234059321603815|0.0749973593777515|5.43|151.0|43|1|anti-sense MSMS UPN48_class_I_Rep_3 7 479.2857666015625 2 479.214075 956.413596 NaN NaN NaN NaN NaN NaN NaN 46.233 1 49.87 49.37 50.37 3.6369 0 0 0 0.40604 1 8942 8942 2.5775 1.7838 1 + 2746 28069 1758 1761 3395 3395 -0.06635393520684829 CYVARAGLQL 10 Unmodified _CYVARAGLQL_ 0 0 0 AluJo_dup53238|chr13:21444774-21445060:+|1.2169851295480671|0.0168957597584371|6.17|151.0|12|1|anti-sense AluJo_dup53238|chr13:21444774-21445060:+|1.2169851295480671|0.0168957597584371|6.17|151.0|12|1|anti-sense AluJo_dup53238|chr13:21444774-21445060:+|1.2169851295480671|0.0168957597584371|6.17|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 547.218017578125 2 547.294776 1092.575 NaN NaN NaN NaN NaN NaN NaN 56.23 1 59.402 58.902 59.902 3.1721 0 0 0 0.53105 1 12910 12910 9.3831 0.78985 1 2747 116 1759 1762 3396 3396 0.032414918367749124 CYVIQFFLIS 10 Unmodified _CYVIQFFLIS_ 0 0 0 REV__L1MB5_dup9638|chr22:31785028-31785981:+|1.5094892670510192|0.0566572884812213|4.74|151.0|58|2|anti-sense REV__L1MB5_dup9638|chr22:31785028-31785981:+|1.5094892670510192|0.0566572884812213|4.74|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 616.821044921875 2 616.822835 1231.63112 NaN NaN NaN NaN NaN NaN NaN 18.004 1 21.531 21.031 22.031 3.5271 0 0 0 0.53105 1 1141 1141 1.6526 0 1 + 2748 26106 1760 1763 3397 3397 0.024566999535863943 CYWISGASY 9 Unmodified _CYWISGASY_ 0 0 0 REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|138|2|anti-sense REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|138|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.23779296875 2 525.223485 1048.43242 NaN NaN NaN NaN NaN NaN NaN 38.06 1 41.302 40.802 41.802 3.2414 0 0 0 0.36505 1 7367 7367 7.2892 1.5574 1 + 2749 25281 1761 1764 3398 3398 -0.08986140625256667 CYYPCPIL 8 Unmodified _CYYPCPIL_ 0 0 0 REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 486.22161865234375 2 486.2219 970.429246 NaN NaN NaN NaN NaN NaN NaN 63.002 1 66.465 65.965 66.965 3.4625 0 0 0 0.4032 1 14147 14147 6.3541 1.1234 1 + 2750 29352 1762 1765 3399 3399 -0.05715107003618414 CYYPCPIL 8 Unmodified _CYYPCPIL_ 0 0 0 REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.2215270996094 2 486.2219 970.429246 0.29758 0.00014469 -0.87872 -0.00042725 -0.58114 -0.00028256 486.2214681473528 62.919 0.52003 66.393 66.159 66.679 3.4738 45 36 2 0 0 0 0.82752 1 14098 14098 2.8892 2.8892 1 127620 + 2751 29352 1762 1765 3400 3400 -0.05715107003618414 CYYPCPIL 8 Unmodified _CYYPCPIL_ 0 0 0 REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.2208251953125 2 486.2219 970.429246 0.2476 0.00012039 -0.7866 -0.00038246 -0.539 -0.00026207 486.2215404053156 62.921 0.59348 66.43 66.073 66.667 3.5091 54 41 2 0 0 0 0.82752 1 14026 14026 6.3541 1.1234 1 84474 + 2752 29352 1762 1765 3401 3401 -0.05715107003618414 CYYPCPIL 8 Unmodified _CYYPCPIL_ 0 0 0 REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 486.2219 970.429246 0.29758 0.00014469 -0.87872 -0.00042725 -0.58114 -0.00028256 486.2214681473528 62.919 0.52003 66.393 66.159 66.679 3.4738 -0.018555 -3.6012E-05 NaN 2.8892 45 36 2 NaN NaN NaN NaN 0 NaN NaN 0 127620 + 2753 29352 1762 1765 -0.05715107003618414 CYYPCPIL 8 Unmodified _CYYPCPIL_ 0 0 0 REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense REV__L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|33|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 486.2219 970.429246 0.2476 0.00012039 -0.7866 -0.00038246 -0.539 -0.00026207 486.2215404053156 62.921 0.59348 66.43 66.073 66.667 3.5091 0.018555 5.3566E-05 NaN 2.8892 54 41 2 NaN NaN NaN NaN 0 NaN NaN 0 84474 + 2754 29352 1762 1765 -0.05715107003618414 CYYYFRNQH 9 Unmodified _CYYYFRNQH_ 0 0 0 REV__ENST00000535264.5_1_5:64863433-64865485:+|nuORF REV__ENST00000535264.5_1_5:64863433-64865485:+|nuORF MSMS UPN47_class_I_Rep_1 2 647.275390625 2 647.277115 1292.53968 NaN NaN NaN NaN NaN NaN NaN 42.963 1 46.651 46.151 47.151 3.6875 0 0 0 0.4007 1 8788 8788 0.52476 0.066424 1 + 2755 22884 1763 1766 3402 3402 -0.09489170691017534 DAACKRRVP 9 Unmodified _DAACKRRVP_ 0 0 0 nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F MSMS UPN46_class_I_Rep_3 1 508.2745056152344 2 508.276918 1014.53928 NaN NaN NaN NaN NaN NaN NaN 59.292 1 59.292 58.792 59.792 0 0 0 0 0.38478 1 13099 13099 4.3292 1.7518 1 2756 2805 1764 1767 3403 3403 0.03259454379769977 DAAEIRLVSK 10 Unmodified _DAAEIRLVSK_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_1 5 551.3171997070312 2 551.316763 1100.61897 0.53877 0.00029703 -0.20867 -0.00011504 0.33011 0.00018199 551.3165323014952 34.261 0.48419 37.776 37.589 38.073 3.5144 78 46 2 0 0 0 0.44232 2 5511 5468;5511 16.275 8.0263 1 129350 2757 2105 1765 1768 3404;3405 3405 0.07268799534745085 DAAEIRLVSK 10 Unmodified _DAAEIRLVSK_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_2 6 551.3171997070312 2 551.316763 1100.61897 0.47768 0.00026335 -0.29666 -0.00016355 0.18102 9.9798E-05 551.3165524207809 34.133 0.55544 37.793 37.571 38.126 3.6607 105 61 2 0 0 0 0.27823 2 5484 5484;5530 35.996 14.406 1 108920 2758 2105 1765 1768 3406;3407 3406 0.07268799534745085 DAAEIRLVSK 10 Unmodified _DAAEIRLVSK_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_3 7 551.3164672851562 2 551.316763 1100.61897 0.30577 0.00016858 -0.22337 -0.00012315 0.082402 4.543E-05 551.3165525636387 34.088 0.51691 37.768 37.554 38.071 3.6797 95 57 2 0 0 0 0.32939 3 5376 5347;5376;5418 25.997 9.4315 1 108970 2759 2105 1765 1768 3408;3409;3410 3409 0.07268799534745085 DAAKDSILR 9 Unmodified _DAAKDSILR_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN48_class_I_Rep_2 6 494.77392578125 2 494.774731 987.534909 NaN NaN NaN NaN NaN NaN NaN 24.039 1 27.678 27.178 28.178 3.6397 0 0 0 0.39036 1 2726 2726 2.9952 1.151 1 2760 2593 1766 1769 3411 3411 0.040642684378553895 DADFNLWNI 9 Unmodified _DADFNLWNI_ 0 0 0 Tigger2_dup264|chr1:243300820-243301965:+|3.227115905941996|0.1100684155647121|4.87|151.0|47|1|anti-sense Tigger2_dup264|chr1:243300820-243301965:+|3.227115905941996|0.1100684155647121|4.87|151.0|47|1|anti-sense Tigger2_dup264|chr1:243300820-243301965:+|3.227115905941996|0.1100684155647121|4.87|151.0|47|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.2588500976562 2 554.258914 1106.50327 0.43342 0.00024023 -0.29165 -0.00016165 0.14177 7.8577E-05 554.2587081604878 62.606 0.71838 65.862 65.539 66.258 3.2558 73 45 2 0 0 0 0.42249 1 14854 14854 6.7232 1.4263 1 147230 2761 33311 1767 1770 3412 3412 -0.045717243161107035 DADFNLWNI 9 Unmodified _DADFNLWNI_ 0 0 0 Tigger2_dup264|chr1:243300820-243301965:+|3.227115905941996|0.1100684155647121|4.87|151.0|47|1|anti-sense Tigger2_dup264|chr1:243300820-243301965:+|3.227115905941996|0.1100684155647121|4.87|151.0|47|1|anti-sense Tigger2_dup264|chr1:243300820-243301965:+|3.227115905941996|0.1100684155647121|4.87|151.0|47|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.260009765625 2 554.258914 1106.50327 0.40592 0.00022498 -0.36508 -0.00020235 0.040839 2.2635E-05 554.2587042424884 62.618 0.60669 65.787 65.533 66.14 3.1698 58 33 2 0 0 0 0.36392 2 14839 14839;14928 10.074 1.9184 1 151770 2762 33311 1767 1770 3413;3414 3413 -0.045717243161107035 DAERAPRNR 9 Unmodified _DAERAPRNR_ 0 0 0 Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|68|3|sense Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|68|3|sense Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|68|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 542.7860717773438 2 542.783953 1083.55335 0.48588 0.00026373 3.1913 0.0017322 3.6772 0.0019959 542.7853772530688 31.463 0.055204 35.104 35.078 35.133 3.641 7 5 2 0 0 0 0.43153 1 4738 4738 6.2058 1.4498 1 40483 2763 33299 1768 1771 3415 3415 0.014918231324145381 DAERQIITCPY 11 Unmodified _DAERQIITCPY_ 0 0 0 L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 437.25830078125 3 436.879939 1307.61799 -0.048385 -2.1139E-05 0.39332 0.00017183 0.34493 0.00015069 437.21501208936314 100.55 0.17299 104.16 104.11 104.28 3.6084 35 23 2 0 0 0 22.551 1 24286 24286 1.3296 0.11481 1 116020 2764 9708 1769 1772 3416 3416 -0.023517828964486398 DAERQIITCPY 11 Unmodified _DAERQIITCPY_ 0 0 0 L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.879939 1307.61799 -0.1501 -6.5575E-05 0.8731 0.00038144 0.723 0.00031586 437.2153236490157 100.71 0.17828 104.22 104.11 104.29 3.5062 -0.05167 0.00061151 NaN 1.3296 36 26 2 NaN NaN NaN NaN 0 NaN NaN 0 90466 2765 9708 1769 1772 -0.023517828964486398 DAERQIITCPY 11 Unmodified _DAERQIITCPY_ 0 0 0 L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.879939 1307.61799 0.10882 4.7541E-05 0.22252 9.7214E-05 0.33134 0.00014476 437.2148995523669 100.49 0.14925 104.23 104.14 104.29 3.7416 -0.043277 -0.00024116 NaN 1.3296 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 117470 2766 9708 1769 1772 -0.023517828964486398 DAERQIITCPY 11 Unmodified _DAERQIITCPY_ 0 0 0 L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|29|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.879939 1307.61799 0.14045 6.1358E-05 0.099083 4.3287E-05 0.23953 0.00010465 437.2148949529131 100.63 0.1254 104.48 104.39 104.52 3.8537 0.20682 -0.00040294 NaN 1.3296 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 72626 2767 9708 1769 1772 -0.023517828964486398 DAFAYVQER 9 Unmodified _DAFAYVQER_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MULTI-MSMS UPN48_class_I_Rep_1 5 549.7645263671875 2 549.764363 1097.51417 0.47615 0.00026177 0.11956 6.573E-05 0.59571 0.0003275 549.7643592472782 44.774 0.49633 48.287 48.034 48.531 3.5132 47 35 2 0 0 0 0.11164 3 8576 8499;8547;8576 31.636 17.04 1 93685 2768 5424 1770 1773 3417;3418;3419 3419 -0.030683219418278895 DAFAYVQER 9 Unmodified _DAFAYVQER_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MULTI-MSMS UPN48_class_I_Rep_2 6 549.7643432617188 2 549.764363 1097.51417 0.41003 0.00022542 0.059489 3.2705E-05 0.46952 0.00025813 549.7643164949188 44.47 0.55274 48.231 47.973 48.526 3.7617 50 37 2 0 0 0 0.15661 3 8489 8469;8489;8552 24.882 15.83 1 100100 2769 5424 1770 1773 3420;3421;3422 3421 -0.030683219418278895 DAFAYVQER 9 Unmodified _DAFAYVQER_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MSMS UPN48_class_I_Rep_3 7 549.7644653320312 2 549.764363 1097.51417 NaN NaN NaN NaN NaN NaN NaN 44.647 1 48.285 47.785 48.785 3.6372 0 0 0 0.098956 1 8458 8458 24.882 13.767 1 2770 5424 1770 1773 3423 3423 -0.030683219418278895 DAFDVKLY 8 Unmodified _DAFDVKLY_ 0 0 0 REV__ENSG00000152785|ENST00000282701|BMP3 REV__ENSG00000152785|ENST00000282701|BMP3 MSMS UPN46_class_I_Rep_3 1 485.7472839355469 2 485.74765 969.480748 NaN NaN NaN NaN NaN NaN NaN 60.549 1 60.549 60.049 61.049 0 0 0 0 0.40364 1 13436 13436 5.7604 0 1 + 2771 19693 1771 1774 3424 3424 -0.005213237137013493 DAFIIPVGK 9 Unmodified _DAFIIPVGK_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MSMS UPN47_class_I_Rep_1 2 480.2872619628906 2 480.28166 958.548768 NaN NaN NaN NaN NaN NaN NaN 43.551 1 47.239 46.739 47.739 3.6882 0 0 0 0.22485 1 8967 8967 14.838 4.0143 1 + 2772 20484 1772 1775 3425 3425 0.06783545936946211 DAFPKRIL 8 Unmodified _DAFPKRIL_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS UPN47_class_I_Rep_1 2 480.287109375 2 480.287277 958.560001 -0.19683 -9.4537E-05 0.17244 8.2819E-05 -0.024397 -1.1718E-05 480.287215183799 43.545 0.76057 47.233 47.009 47.769 3.6875 90 44 3 0 0 0 0.82752 1 9010 9010 11.64 3.7301 1 123200 2773 702 1773 1776 3426 3426 0.07906368031081001 DAFPKRIL 8 Unmodified _DAFPKRIL_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2874450683594 2 480.287277 958.560001 -0.10482 -5.0344E-05 0.14381 6.9072E-05 0.038993 1.8728E-05 480.2872310188395 43.98 0.71449 47.338 47.041 47.756 3.358 60 38 2 0 0 0 0.82752 1 9110 9110 11.64 3.7301 1 115490 2774 702 1773 1776 3427 3427 0.07906368031081001 DAFPKRIL 8 Unmodified _DAFPKRIL_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS UPN47_class_I_Rep_3 4 480.2869873046875 2 480.287277 958.560001 -0.17992 -8.6412E-05 0.051516 2.4742E-05 -0.1284 -6.167E-05 480.28726599963414 44.115 0.85936 47.359 47.076 47.936 3.2441 86 48 2 0 0 0 0.82752 1 9244 9244 16.942 4.4107 1 119150 2775 702 1773 1776 3428 3428 0.07906368031081001 DAFRKLFRFY 10 Unmodified _DAFRKLFRFY_ 0 0 0 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 MSMS UPN46_class_I_Rep_3 1 454.75531005859375 3 454.915423 1361.72444 NaN NaN NaN NaN NaN NaN NaN 86.914 1 86.914 86.414 87.414 0 0 0 0 0.53105 1 20798 20798 0.77653 0.36827 1 2776 1522 1774 1777 3429 3429 0.058047604510193196 DAFRLIPK 8 Unmodified _DAFRLIPK_ 0 0 0 REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|157|3|anti-sense REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|157|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.2874450683594 2 480.287277 958.560001 -0.19683 -9.4537E-05 0.17244 8.2819E-05 -0.024397 -1.1718E-05 480.287215183799 43.545 0.76057 47.233 47.009 47.769 3.6875 90 44 3 0 0 0 0.82752 2 8922 8922;9049 4.756 0 1 123200 + 2777 29141 1775 1778 3430;3431 3430 0.0790636803109237 DAFRLIPK 8 Unmodified _DAFRLIPK_ 0 0 0 REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|157|3|anti-sense REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|157|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.2872009277344 2 480.287277 958.560001 -0.10482 -5.0344E-05 0.14381 6.9072E-05 0.038993 1.8728E-05 480.2872310188395 43.98 0.71449 47.338 47.041 47.756 3.358 60 38 2 0 0 0 0.82752 3 9063 9063;9153;9199 4.756 0 1 115490 + 2778 29141 1775 1778 3432;3433;3434 3432 0.0790636803109237 DAFRLIPK 8 Unmodified _DAFRLIPK_ 0 0 0 REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|157|3|anti-sense REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|157|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.2870788574219 2 480.287277 958.560001 -0.17992 -8.6412E-05 0.051516 2.4742E-05 -0.1284 -6.167E-05 480.28726599963414 44.115 0.85936 47.359 47.076 47.936 3.2441 86 48 2 0 0 0 0.82752 2 9193 9193;9290 4.756 0 1 119150 + 2779 29141 1775 1778 3435;3436 3435 0.0790636803109237 DAGALLHVSN 10 Unmodified _DAGALLHVSN_ 0 0 0 REV__nc|ENSG00000111266|Q9BY84-2|DUSP16 REV__nc|ENSG00000111266|Q9BY84-2|DUSP16 MSMS UPN48_class_I_Rep_1 5 498.7587585449219 2 498.759081 995.503609 NaN NaN NaN NaN NaN NaN NaN 42.655 1 46.163 45.663 46.663 3.5079 0 0 0 0.53105 1 7914 7914 2.7352 0.89096 1 + 2780 31960 1776 1779 3437 3437 0.005676954037653559 DAHCECHP 8 Unmodified _DAHCECHP_ 0 0 0 ENSG00000131386|ENST00000339732|GALNT15 ENSG00000131386|ENST00000339732|GALNT15 ENSG00000131386|ENST00000339732|GALNT15 MSMS UPN46_class_I_Rep_3 1 456.1609191894531 2 456.160362 910.306171 NaN NaN NaN NaN NaN NaN NaN 51.606 1 51.606 51.106 52.106 0 0 0 0 0.40604 1 10982 10982 2.5775 0 1 2781 2709 1777 1780 3438 3438 -0.15256970402197112 DAHCECHP 8 Unmodified _DAHCECHP_ 0 0 0 ENSG00000131386|ENST00000339732|GALNT15 ENSG00000131386|ENST00000339732|GALNT15 ENSG00000131386|ENST00000339732|GALNT15 MSMS UPN46_class_I_Rep_3 1 456.1603088378906 2 456.160362 910.306171 NaN NaN NaN NaN NaN NaN NaN 57.655 1 57.655 57.155 58.155 0 0 0 0 0.40604 1 12646 12646 2.5775 0 1 2782 2709 1777 1780 3439 3439 -0.15256970402197112 DAIKQNVQH 9 Unmodified _DAIKQNVQH_ 0 0 0 REV__ENSG00000184949|ENST00000535113|FAM227A REV__ENSG00000184949|ENST00000535113|FAM227A MSMS UPN48_class_I_Rep_3 7 526.7783813476562 2 526.777805 1051.54106 NaN NaN NaN NaN NaN NaN NaN 20.041 1 23.662 23.162 24.162 3.6215 0 0 0 0.39518 1 1629 1629 1.8442 0 1 + 2783 20837 1778 1781 3440 3440 0.017347866693853575 DAIPILYY 8 Unmodified _DAIPILYY_ 0 0 0 ENSG00000180772|ENST00000371906|AGTR2 ENSG00000180772|ENST00000371906|AGTR2 ENSG00000180772|ENST00000371906|AGTR2 MSMS UPN47_class_I_Rep_1 2 484.2583923339844 2 484.260394 966.506234 NaN NaN NaN NaN NaN NaN NaN 19.033 1 22.613 22.113 23.113 3.5806 0 0 0 0.40581 1 1689 1689 2.8892 0.58649 1 2784 4898 1779 1782 3441 3441 0.021641508087100192 DAKELKEH 8 Unmodified _DAKELKEH_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1;nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS UPN46_class_I_Rep_3 1 485.26458740234375 2 485.253631 968.49271 NaN NaN NaN NaN NaN NaN NaN 54.828 1 54.828 54.328 55.328 0 0 0 0 0.4044 1 11892 11892 4.756 0 1 2785 4110 1780 1783 3442 3442 0.007202930294738508 DAKGRIVL 8 Unmodified _DAKGRIVL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN47_class_I_Rep_1 2 436.27142333984375 2 436.271627 870.528701 -0.41901 -0.0001828 0.16627 7.254E-05 -0.25273 -0.00011026 436.2715519643833 29.445 0.72353 33.202 32.888 33.612 3.7578 121 55 3 0 0 0 0.82752 3 4661 4661;4704;4746 13.508 4.1604 1 166990 2786 1792 1781 1784 3443;3444;3445 3443 0.0882579499698295 DAKGRIVL 8 Unmodified _DAKGRIVL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN47_class_I_Rep_2 3 436.2712707519531 2 436.271627 870.528701 -0.74783 -0.00032626 0.41208 0.00017978 -0.33575 -0.00014648 436.2716472083269 29.681 0.82484 33.173 32.771 33.596 3.4923 114 67 2 0 0 0 0.82752 4 4708 4708;4747;4782;4820 39.957 5.8549 1 141910 2787 1792 1781 1784 3446;3447;3448;3449 3446 0.0882579499698295 DAKILALVL 9 Unmodified _DAKILALVL_ 0 0 0 L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|234|3|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|234|3|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|234|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.3119812011719 2 478.312961 954.611368 0.22131 0.00010586 -0.31315 -0.00014978 -0.091835 -4.3926E-05 478.31263559911406 61.421 0.39511 64.934 64.851 65.246 3.5129 43 32 2 0 0 0 0.37599 1 13626 13626 9.3831 0 1 104270 2788 14139 1782 1785 3450 3450 0.13224692005110228 DAKLNKIL 8 Unmodified _DAKLNKIL_ 0 0 0 L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|35|1|sense;L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|30|3|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|35|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|35|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.7867431640625 2 457.78711 913.559667 -0.69486 -0.0003181 -0.78146 -0.00035774 -1.4763 -0.00067584 457.78660506392947 35.984 0.91276 39.238 39.012 39.925 3.2547 97 60 2 0 0 0 0.82752 1 6745 6745 19.257 0 1 107500 2789 9753 1783 1786 3451 3451 0.09942948311231703 DAKTREKL 8 Unmodified _DAKTREKL_ 0 0 0 ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000596073.5_1_19:14640508-14673988:+|nuORF;ENST00000600083.5_1_19:14640508-14673988:+|nuORF;nc|ENSG00000099797|Q9NZ01-2|TECR ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.7770690917969 2 480.777274 959.539994 -0.21332 -0.00010256 -0.23013 -0.00011064 -0.44345 -0.0002132 480.7770218536679 13.338 0.2414 16.726 16.629 16.87 3.388 49 28 3 0 0 0 0.82752 1 297 297 9.3831 0 1 75459 2790 1447 1784 1787 3452 3452 0.058605723004689025 DAKTREKL 8 Unmodified _DAKTREKL_ 0 0 0 ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000596073.5_1_19:14640508-14673988:+|nuORF;ENST00000600083.5_1_19:14640508-14673988:+|nuORF;nc|ENSG00000099797|Q9NZ01-2|TECR ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.77716064453125 2 480.777274 959.539994 -0.78867 -0.00037918 0.20784 9.9926E-05 -0.58083 -0.00027925 480.7772661360955 13.376 0.25423 16.749 16.666 16.92 3.3734 49 30 3 0 0 0 0.82752 1 295 295 5.7319 0 1 62211 2791 1447 1784 1787 3453 3453 0.058605723004689025 DAKTREKL 8 Unmodified _DAKTREKL_ 0 0 0 ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000596073.5_1_19:14640508-14673988:+|nuORF;ENST00000600083.5_1_19:14640508-14673988:+|nuORF;nc|ENSG00000099797|Q9NZ01-2|TECR ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 480.777274 959.539994 -0.3812 -0.00018327 -0.29342 -0.00014107 -0.67462 -0.00032434 480.7770778780527 13.298 0.31596 16.755 16.661 16.977 3.457 0.012065 -0.00016223 NaN 9.3831 53 36 3 NaN NaN NaN NaN 0 NaN NaN 0 75126 2792 1447 1784 1787 0.058605723004689025 DALQARDYL 9 Unmodified _DALQARDYL_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000214893.9_1_9:5823966-5832826:-|nuORF;ENST00000475005.1_1_9:5812814-5833063:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS UPN47_class_I_Rep_1 2 532.7722778320312 2 532.772188 1063.52982 -0.07547 -4.0208E-05 0.32682 0.00017412 0.25135 0.00013391 532.7723689193095 33.112 0.9659 36.81 36.309 37.275 3.6983 186 58 4 0 0 0 0.11355 3 5754 5754;5793;5831 31.268 5.869 1 724580 2793 1432 1785 1788 3454;3455;3456 3454 0.0005996457521177945 DALQARDYL 9 Unmodified _DALQARDYL_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000214893.9_1_9:5823966-5832826:-|nuORF;ENST00000475005.1_1_9:5812814-5833063:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS UPN47_class_I_Rep_2 3 532.7723999023438 2 532.772188 1063.52982 -0.088715 -4.7265E-05 0.31708 0.00016893 0.22836 0.00012166 532.772323269816 33.341 1.1022 36.781 36.4 37.502 3.4398 230 76 4 0 0 0 0.38714 1 5984 5984 8.7454 1.1365 1 692260 2794 1432 1785 1788 3457 3457 0.0005996457521177945 DALQARDYL 9 Unmodified _DALQARDYL_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000214893.9_1_9:5823966-5832826:-|nuORF;ENST00000475005.1_1_9:5812814-5833063:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 532.772188 1063.52982 -0.1746 -9.3024E-05 0.34786 0.00018533 0.17326 9.2309E-05 532.7723876933105 33.567 1.1745 36.842 36.406 37.581 3.2748 0.030658 1.8006E-05 NaN 31.268 243 84 4 NaN NaN NaN NaN 0 NaN NaN 0 700670 2795 1432 1785 1788 0.0005996457521177945 DALQSSRPF 9 Unmodified _DALQSSRPF_ 0 0 0 REV__L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|20|2|sense REV__L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.7590026855469 2 510.759081 1019.50361 0.12909 6.5933E-05 0.24066 0.00012292 0.36975 0.00018885 510.7590061913887 51.267 0.49264 54.86 54.574 55.066 3.5933 35 24 2 0 0 0 0.37599 1 11362 11362 9.3831 0.035688 1 62027 + 2796 29906 1786 1789 3458 3458 -0.005363045962326396 DANLIFFVN 9 Unmodified _DANLIFFVN_ 0 0 0 L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|38|1|anti-sense L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|38|1|anti-sense L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_3 4 526.77294921875 2 526.7742 1051.53385 NaN NaN NaN NaN NaN NaN NaN 27.58 1 30.922 30.422 31.422 3.3422 0 0 0 0.38639 1 4206 4206 3.9444 0 1 2797 11483 1787 1790 3459 3459 0.01014054068969017 DAPAHHLF 8 Unmodified _DAPAHHLF_ 0 0 0 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 MULTI-MSMS UPN47_class_I_Rep_1 2 454.224365234375 2 454.224677 906.434801 -0.37121 -0.00016861 0.19535 8.8731E-05 -0.17586 -7.9881E-05 454.2246638121557 31.412 0.92018 35.141 34.854 35.774 3.7293 135 69 3 0 0 0 0.82752 5 5209 5209;5251;5287;5325;5364 63.394 48.812 1 290660 2798 2904 1788 1791 3460;3461;3462;3463;3464 3460 -0.022159241052804646 DAPAHHLF 8 Unmodified _DAPAHHLF_ 0 0 0 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 MULTI-MSMS UPN47_class_I_Rep_2 3 454.224365234375 2 454.224677 906.434801 -0.51157 -0.00023237 0.27466 0.00012476 -0.23691 -0.00010761 454.2247134778293 31.725 0.86082 35.195 34.809 35.67 3.4691 156 66 3 0 0 0 0.82752 6 5464 5346;5386;5425;5464;5503;5540 63.394 52.693 1 250730 2799 2904 1788 1791 3465;3466;3467;3468;3469;3470 3468 -0.022159241052804646 DAPAHHLF 8 Unmodified _DAPAHHLF_ 0 0 0 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 MSMS UPN47_class_I_Rep_3 4 454.2245178222656 2 454.224677 906.434801 NaN NaN NaN NaN NaN NaN NaN 33.056 1 36.343 35.843 36.843 3.2867 0 0 0 0.40581 1 5849 5849 2.8892 0.58649 1 2800 2904 1788 1791 3471 3471 -0.022159241052804646 DAPAHHLF 8 Unmodified _DAPAHHLF_ 0 0 0 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 454.224677 906.434801 -0.79543 -0.0003613 0.45585 0.00020706 -0.33958 -0.00015425 454.22479207551237 31.899 1.0522 35.199 34.817 35.869 3.2991 0.02043 0.0001118 NaN 63.394 173 82 3 NaN NaN NaN NaN 0 NaN NaN 0 261400 2801 2904 1788 1791 -0.022159241052804646 DAPVGRVR 8 Unmodified _DAPVGRVR_ 0 0 0 REV__ENST00000329548.4_1_12:53645894-53646626:+|nuORF REV__ENST00000329548.4_1_12:53645894-53646626:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.752685546875 2 435.251226 868.487899 -0.01274 -5.5453E-06 -0.48251 -0.00021001 -0.49525 -0.00021556 435.2509537952896 71.723 1.0498 75.189 74.866 75.916 3.466 124 95 2 0 0 0 0.82752 1 16859 16859 5.2307 0 1 162610 + 2802 21773 1789 1792 3472 3472 0.04839453677379879 DAQFHFVL 8 Unmodified _DAQFHFVL_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS UPN47_class_I_Rep_1 2 488.748291015625 2 488.747985 975.481417 0.11515 5.6282E-05 -0.49395 -0.00024141 -0.37879 -0.00018513 488.7478491268591 69.476 0.54456 72.844 72.572 73.117 3.3678 80 48 2 0 0 0 0.82752 1 16864 16864 8.5933 0.68312 1 114550 2803 5451 1790 1793 3473 3473 -0.007304842740154527 DAQLAEIKAQL 11 Unmodified _DAQLAEIKAQL_ 0 0 0 REV__nc|ENSG00000163681|Q14BN4-4|SLMAP REV__nc|ENSG00000163681|Q14BN4-4|SLMAP MSMS UPN48_class_I_Rep_1 5 600.3534545898438 2 600.335153 1198.65575 NaN NaN NaN NaN NaN NaN NaN 65.688 1 69.14 68.64 69.64 3.4516 0 0 0 0.38417 1 14962 14962 2.4985 0 1 + 2804 19997 1791 1794 3474 3474 0.0643705136067183 DAREKISL 8 Unmodified _DAREKISL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENST00000491021.1_1_22:42993722-42998991:-|nuORF ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_1 2 466.2637634277344 2 466.263999 930.513445 -0.34915 -0.00016279 -0.011841 -5.5211E-06 -0.36099 -0.00016832 466.2639052879132 30.341 1.57 34.086 33.726 35.296 3.7449 244 121 3 0 0 0 0.82752 3 4910 4910;4949;4988 83.429 18.194 1 1328800 2805 1484 1792 1795 3475;3476;3477 3475 0.04540883409140406 DAREKISL 8 Unmodified _DAREKISL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENST00000491021.1_1_22:42993722-42998991:-|nuORF ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_2 3 466.26373291015625 2 466.263999 930.513445 -0.37759 -0.00017606 0.015327 7.1463E-06 -0.36226 -0.00016891 466.26392787610143 30.551 1.8412 34.033 33.569 35.41 3.4821 281 148 3 0 0 0 0.82752 4 4992 4992;5032;5073;5110 96.367 24.444 1 1473700 2806 1484 1792 1795 3478;3479;3480;3481 3478 0.04540883409140406 DARPWDFQAE 10 Unmodified _DARPWDFQAE_ 0 0 0 ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENSG00000128578|ENST00000249344|STRIP2 ENST00000485775.5_1_1:110582506-110596531:+|nuORF ENST00000485775.5_1_1:110582506-110596531:+|nuORF MSMS UPN48_class_I_Rep_1 5 617.7781982421875 2 617.778002 1233.54145 NaN NaN NaN NaN NaN NaN NaN 113.06 1 116.7 116.2 117.2 3.6314 0 0 0 0.53105 1 27458 27458 1.4819 0 1 2807 3273 1793 1796 3482 3482 -0.06597838401444278 DARQKIGL 8 Unmodified _DARQKIGL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_1 2 450.76654052734375 2 450.766709 899.518865 -0.39175 -0.00017659 -0.085425 -3.8507E-05 -0.47717 -0.00021509 450.7665539244433 27.967 0.73499 31.733 31.418 32.153 3.7662 125 59 3 0 0 0 0.82752 1 4221 4221 30.637 5.2372 1 239980 2808 1484 1794 1797 3483 3483 0.06508606991610577 DARQKIGL 8 Unmodified _DARQKIGL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_2 3 450.7663269042969 2 450.766709 899.518865 -0.5496 -0.00024774 0.028041 1.264E-05 -0.52156 -0.0002351 450.7665522025698 28.107 0.87535 31.606 31.296 32.172 3.4986 153 73 3 0 0 0 0.82752 1 4345 4345 20.454 3.5113 1 202630 2809 1484 1794 1797 3484 3484 0.06508606991610577 DARQKIGL 8 Unmodified _DARQKIGL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_3 4 450.7662048339844 2 450.766709 899.518865 -0.88722 -0.00039993 0.19662 8.8629E-05 -0.6906 -0.0003113 450.76662689038193 28.336 0.80579 31.669 31.358 32.163 3.3338 150 69 3 0 0 0 0.82752 1 4436 4436 24.021 2.2739 1 192770 2810 1484 1794 1797 3485 3485 0.06508606991610577 DASAQFGRHCL 11 Unmodified _DASAQFGRHCL_ 0 0 0 REV__ENSG00000142449|ENST00000600128|FBN3 REV__ENSG00000142449|ENST00000600128|FBN3 MSMS UPN47_class_I_Rep_2 3 602.779296875 2 602.780022 1203.54549 NaN NaN NaN NaN NaN NaN NaN 15.495 1 18.881 18.381 19.381 3.3864 0 0 0 0.38417 1 827 827 1.1933 0.12188 1 + 2811 19404 1795 1798 3486 3486 -0.048140721793515695 DAVERHLA 8 Unmodified _DAVERHLA_ 0 0 0 REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF MSMS UPN47_class_I_Rep_1 2 455.74041748046875 2 455.740691 909.466829 NaN NaN NaN NaN NaN NaN NaN 19.997 1 23.609 23.109 24.109 3.6118 0 0 0 0.40501 1 1932 1932 3.9444 0 1 + 2812 23086 1796 1799 3487 3487 0.008474435778339284 DAVSRWTVS 9 Unmodified _DAVSRWTVS_ 0 0 0 MER21B_dup1377|chr9:88429168-88429969:-|1.151864762557423|0.0095620154667905|6.91|151.0|17|2|sense MER21B_dup1377|chr9:88429168-88429969:-|1.151864762557423|0.0095620154667905|6.91|151.0|17|2|sense MER21B_dup1377|chr9:88429168-88429969:-|1.151864762557423|0.0095620154667905|6.91|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 510.7591552734375 2 510.759081 1019.50361 NaN NaN NaN NaN NaN NaN NaN 50.821 1 54.346 53.846 54.846 3.5246 0 0 0 0.38639 1 10418 10418 3.9444 0.3479 1 2813 15865 1797 1800 3488 3488 -0.005363045962440083 DAYIRIVL 8 Unmodified _DAYIRIVL_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000155849|Q92556-3|ELMO1;ELMO1|p.S403N|1|0.14|ENSG00000155849|chr7:37096711-37096711|C/T|missense_variant ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MULTI-MSMS UPN47_class_I_Rep_3 4 481.7868957519531 2 481.78711 961.559667 0.10068 4.8504E-05 0.20777 0.0001001 0.30845 0.00014861 481.78718863966895 68.444 0.6109 71.642 71.273 71.884 3.1977 58 41 2 0 0 0 0.82752 1 16633 16633 24.021 9.1823 1 80553 2814 3713 1798 1801 3489 3489 0.07734948311224343 DAYLEKNY 8 Unmodified _DAYLEKNY_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN47_class_I_Rep_3 4 508.2401428222656 2 508.24019 1014.46583 NaN NaN NaN NaN NaN NaN NaN 60.667 1 63.832 63.332 64.332 3.1651 0 0 0 0.39615 1 14261 14261 9.3831 0 1 + 2815 21033 1799 1802 3490 3490 -0.04082815581716659 DAYTKKEL 8 Unmodified _DAYTKKEL_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MSMS UPN47_class_I_Rep_1 2 484.25836181640625 2 484.258382 966.502212 NaN NaN NaN NaN NaN NaN NaN 19.289 1 22.87 22.37 23.37 3.5806 0 0 0 0.40527 1 1749 1749 3.5965 0.31518 1 2816 3006 1800 1803 3491 3491 0.017620613149915698 DCCDYSCKN 9 Unmodified _DCCDYSCKN_ 0 0 0 ENST00000527755.5_1_11:119003111-119005205:+|nuORF;nc|ENSG00000172273|Q9BQA5-2|HINFP;ENSG00000172273|ENST00000350777|HINFP ENST00000527755.5_1_11:119003111-119005205:+|nuORF ENST00000527755.5_1_11:119003111-119005205:+|nuORF MSMS UPN46_class_I_Rep_3 1 525.7772827148438 2 525.669902 1049.32525 NaN NaN NaN NaN NaN NaN NaN 71.802 1 71.802 71.302 72.302 0 0 0 0 0.39428 1 16563 16563 2.0598 1.2661 1 2817 4569 1801 1804 3492 3492 -0.1974380189344629 DCCDYSCKNL 10 Unmodified _DCCDYSCKNL_ 0 0 0 ENST00000527755.5_1_11:119003111-119005205:+|nuORF;nc|ENSG00000172273|Q9BQA5-2|HINFP;ENSG00000172273|ENST00000350777|HINFP ENST00000527755.5_1_11:119003111-119005205:+|nuORF ENST00000527755.5_1_11:119003111-119005205:+|nuORF MSMS UPN48_class_I_Rep_2 6 582.2108154296875 2 582.211934 1162.40932 NaN NaN NaN NaN NaN NaN NaN 24.473 1 28.112 27.612 28.612 3.6397 0 0 0 0.53105 1 2846 2846 0.35063 0.35063 1 2818 4569 1802 1805 3493 3493 -0.16539270796556593 DCCLFMIEL 9 Unmodified _DCCLFMIEL_ 0 0 0 REV__L1MEf_dup7964|chr11:62817412-62817811:+|1.2704434879764055|0.1903764519716481|2.74|151.0|27|2|anti-sense REV__L1MEf_dup7964|chr11:62817412-62817811:+|1.2704434879764055|0.1903764519716481|2.74|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 543.7371215820312 2 543.737057 1085.45956 0.36146 0.00019654 -1.1349 -0.00061709 -0.77345 -0.00042055 543.7362887718338 68.708 0.48579 71.978 71.88 72.366 3.2696 51 40 2 0 0 0 0.13631 1 16619 16619 26.884 3.7352 1 150610 + 2819 28690 1803 1806 3494 3494 -0.07975116400757543 DCCSCVRGV 9 Unmodified _DCCSCVRGV_ 0 0 0 REV__MER20B_dup3283|chr14:95441826-95442193:+|1.5710171672347777|0.1047364956698906|3.91|151.0|1|1|sense REV__MER20B_dup3283|chr14:95441826-95442193:+|1.5710171672347777|0.1047364956698906|3.91|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 471.09332275390625 2 471.185523 940.356492 NaN NaN NaN NaN NaN NaN NaN 65.492 1 65.492 64.992 65.992 0 0 0 0 0.39518 1 14805 14805 1.8442 1.0506 1 + 2820 31163 1804 1807 3495 3495 -0.11607184068691367 DCDESGGPEPE 11 Unmodified _DCDESGGPEPE_ 0 0 0 REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B MSMS UPN47_class_I_Rep_2 3 567.6981201171875 2 567.698226 1133.3819 NaN NaN NaN NaN NaN NaN NaN 115.76 1 119.25 118.75 119.75 3.4965 0 0 0 0.38417 1 28235 28235 1.3295 0.63916 1 + 2821 18440 1805 1808 3496 3496 -0.17945759531562544 DCDWDYIE 8 Unmodified _DCDWDYIE_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|165|1|anti-sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|165|1|anti-sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|165|1|anti-sense MSMS UPN47_class_I_Rep_2 3 529.6917724609375 2 529.692215 1057.36988 NaN NaN NaN NaN NaN NaN NaN 116.93 1 120.42 119.92 120.92 3.4891 0 0 0 0.40604 1 28563 28563 2.5775 0.51773 1 2822 11309 1806 1809 3497 3497 -0.15651331484127695 DCLILRSVCS 10 Unmodified _DCLILRSVCS_ 0 0 0 L1PA10_dup6722|chr19:44861448-44862133:+|1.502547711060358|0.253088600269282|2.57|150.0|43|3|anti-sense L1PA10_dup6722|chr19:44861448-44862133:+|1.502547711060358|0.253088600269282|2.57|150.0|43|3|anti-sense L1PA10_dup6722|chr19:44861448-44862133:+|1.502547711060358|0.253088600269282|2.57|150.0|43|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.2791748046875 2 554.778102 1107.54165 0.60477 0.00033551 -0.65376 -0.00036269 -0.04899 -2.7178E-05 554.7776910252526 13.763 0.25825 17.417 17.279 17.537 3.6542 57 35 2 0 0 0 0.56155 1 301 301 2.7352 0 1 28367 2823 13630 1807 1810 3498 3498 -0.007818779974286372 DCMDSDDC 8 Unmodified _DCMDSDDC_ 0 0 0 L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense MSMS UPN46_class_I_Rep_3 1 452.1108093261719 2 452.111886 902.209219 NaN NaN NaN NaN NaN NaN NaN 60.723 1 60.723 60.223 61.223 0 0 0 0 0.40798 1 13482 13482 0 0 1 2824 9442 1808 1811 3499 3499 -0.2457974546416608 DCMDSDDC 8 Unmodified _DCMDSDDC_ 0 0 0 L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_2 3 451.7632751464844 2 452.111886 902.209219 NaN NaN NaN NaN NaN NaN NaN 57.501 1 60.792 60.292 61.292 3.2912 0 0 0 0.40798 1 13244 13244 0 0 1 2825 9442 1808 1811 3500 3500 -0.2457974546416608 DCPLLLVTV 9 Unmodified _DCPLLLVTV_ 0 0 0 REV__ENST00000450317.1_1_7:90261387-90261723:+|nuORF REV__ENST00000450317.1_1_7:90261387-90261723:+|nuORF MSMS UPN47_class_I_Rep_1 2 486.77752685546875 2 486.775354 971.536154 NaN NaN NaN NaN NaN NaN NaN 35.737 1 39.413 38.913 39.913 3.6762 0 0 0 0.37476 1 6589 6589 6.7232 0 1 + 2826 22383 1809 1812 3501 3501 0.04924766482417908 DCQCFYPPCV 10 Unmodified _DCQCFYPPCV_ 0 0 0 HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|44|2|anti-sense HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|44|2|anti-sense HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 587.7196044921875 2 587.721938 1173.42932 NaN NaN NaN NaN NaN NaN NaN 114.53 1 118.01 117.51 118.51 3.4802 0 0 0 0.53105 1 28128 28128 3.2813 1.2216 1 2827 7925 1810 1813 3502 3502 -0.15045475065949176 DCRPFRFFL 9 Unmodified _DCRPFRFFL_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|281|3|anti-sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|281|3|anti-sense MSMS UPN47_class_I_Rep_1 2 600.8036499023438 2 600.802768 1199.59098 NaN NaN NaN NaN NaN NaN NaN 72.302 1 75.681 75.181 76.181 3.3799 0 0 0 0.39598 1 17683 17683 1.6526 0.96225 1 + 2828 29211 1811 1814 3503 3503 -0.0008280192632810213 DCSDCYCCSGS 11 Unmodified _DCSDCYCCSGS_ 0 0 0 L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense MSMS UPN46_class_I_Rep_3 1 571.645751953125 2 571.64831 1141.28207 NaN NaN NaN NaN NaN NaN NaN 60.582 1 60.582 60.082 61.082 0 0 0 0 0.38417 1 13446 13446 0 0 1 2829 15361 1812 1815 3504 3504 -0.28292359733063677 DCSLWKFFY 9 Unmodified _DCSLWKFFY_ 0 0 0 L1M4a2_dup1352|chr11:5671331-5672202:+|1.762785662382815|0.2978803500339018|2.57|151.0|55|3|anti-sense L1M4a2_dup1352|chr11:5671331-5672202:+|1.762785662382815|0.2978803500339018|2.57|151.0|55|3|anti-sense L1M4a2_dup1352|chr11:5671331-5672202:+|1.762785662382815|0.2978803500339018|2.57|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_2 6 604.7747802734375 2 604.775885 1207.53722 NaN NaN NaN NaN NaN NaN NaN 25.563 1 29.199 28.699 29.699 3.6363 0 0 0 0.39518 1 3129 3129 1.8442 1.0506 1 2830 8966 1813 1816 3505 3505 -0.058250191486877156 DCSPIHDD 8 Unmodified _DCSPIHDD_ 0 0 0 REV__MER68_dup217|chr2:233155910-233156100:-|1.2102589056797242|0.0103526735170635|6.87|151.0|8|1|anti-sense REV__MER68_dup217|chr2:233155910-233156100:-|1.2102589056797242|0.0103526735170635|6.87|151.0|8|1|anti-sense MSMS UPN46_class_I_Rep_3 1 451.17236328125 2 451.17145 900.328346 NaN NaN NaN NaN NaN NaN NaN 102.94 1 102.94 102.44 103.44 0 0 0 0 0.40604 1 25119 25119 2.5775 0 1 + 2831 31538 1814 1817 3506 3506 -0.1258046745278989 DCSPIHDD 8 Unmodified _DCSPIHDD_ 0 0 0 REV__MER68_dup217|chr2:233155910-233156100:-|1.2102589056797242|0.0103526735170635|6.87|151.0|8|1|anti-sense REV__MER68_dup217|chr2:233155910-233156100:-|1.2102589056797242|0.0103526735170635|6.87|151.0|8|1|anti-sense MSMS UPN46_class_I_Rep_3 1 451.1723327636719 2 451.17145 900.328346 NaN NaN NaN NaN NaN NaN NaN 103.14 1 103.14 102.64 103.64 0 0 0 0 0.40604 1 25169 25169 2.5775 0 1 + 2832 31538 1814 1817 3507 3507 -0.1258046745278989 DCTPAWATQ 9 Unmodified _DCTPAWATQ_ 0 0 0 FRAM_dup3368|chr8:97647798-97647965:+|1.0319174586842903|0.0182424196920875|5.82|151.0|3|1|sense FRAM_dup3368|chr8:97647798-97647965:+|1.0319174586842903|0.0182424196920875|5.82|151.0|3|1|sense FRAM_dup3368|chr8:97647798-97647965:+|1.0319174586842903|0.0182424196920875|5.82|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 496.7122802734375 2 496.710742 991.406931 NaN NaN NaN NaN NaN NaN NaN 35.145 1 38.821 38.321 39.321 3.6762 0 0 0 0.3967 1 6412 6412 1.4819 0.68827 1 2833 7780 1815 1818 3508 3508 -0.089116151476901 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1335754394531 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 14.271 1 14.271 13.771 14.771 0 0 0 0 0.40738 1 592 592 0.79363 0 1 + 2834 26905 1816 1819 3509 3509 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1333312988281 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 15.404 1 15.404 14.904 15.904 0 0 0 0 0.40738 1 874 874 0.79363 0 1 + 2835 26905 1816 1819 3510 3510 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 30.187 1 30.187 29.687 30.687 0 0 0 0 0.40738 1 4881 4881 0.79363 0 1 + 2836 26905 1816 1819 3511 3511 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1334228515625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 35.158 1 35.158 34.658 35.658 0 0 0 0 0.40738 1 6367 6367 0.79363 0 1 + 2837 26905 1816 1819 3512 3512 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 44.297 1 44.297 43.797 44.797 0 0 0 0 0.40738 1 8915 8915 0.79363 0 1 + 2838 26905 1816 1819 3513 3513 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13360595703125 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 44.438 1 44.438 43.938 44.938 0 0 0 0 0.40738 1 8958 8958 0.79363 0 1 + 2839 26905 1816 1819 3514 3514 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1332092285156 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 44.634 1 44.634 44.134 45.134 0 0 0 0 0.40738 1 9008 9008 0.79363 0 1 + 2840 26905 1816 1819 3515 3515 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1333312988281 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 45.228 1 45.228 44.728 45.728 0 0 0 0 0.40738 1 9177 9177 0.79363 0 1 + 2841 26905 1816 1819 3516 3516 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.133544921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 45.378 1 45.378 44.878 45.878 0 0 0 0 0.40738 1 9222 9222 0.79363 0 1 + 2842 26905 1816 1819 3517 3517 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13330078125 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 45.549 1 45.549 45.049 46.049 0 0 0 0 0.40738 1 9271 9271 0.79363 0 1 + 2843 26905 1816 1819 3518 3518 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1336364746094 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 48.477 1 48.477 47.977 48.977 0 0 0 0 0.40738 1 10104 10104 0.79363 0 1 + 2844 26905 1816 1819 3519 3519 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1336364746094 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 48.611 1 48.611 48.111 49.111 0 0 0 0 0.40738 1 10143 10143 0.79363 0 1 + 2845 26905 1816 1819 3520 3520 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 48.798 1 48.798 48.298 49.298 0 0 0 0 0.40738 1 10196 10196 0.79363 0 1 + 2846 26905 1816 1819 3521 3521 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 49.063 1 49.063 48.563 49.563 0 0 0 0 0.40738 1 10273 10273 0.79363 0 1 + 2847 26905 1816 1819 3522 3522 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 49.219 1 49.219 48.719 49.719 0 0 0 0 0.40738 1 10316 10316 0.79363 0 1 + 2848 26905 1816 1819 3523 3523 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1334533691406 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 49.5 1 49.5 49 50 0 0 0 0 0.40738 1 10394 10394 0.79363 0 1 + 2849 26905 1816 1819 3524 3524 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.133544921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 49.647 1 49.647 49.147 50.147 0 0 0 0 0.40738 1 10436 10436 0.79363 0 1 + 2850 26905 1816 1819 3525 3525 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13330078125 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 49.849 1 49.849 49.349 50.349 0 0 0 0 0.40738 1 10494 10494 0.79363 0 1 + 2851 26905 1816 1819 3526 3526 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1326904296875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 55.429 1 55.429 54.929 55.929 0 0 0 0 0.40738 1 12048 12048 0.79363 0 1 + 2852 26905 1816 1819 3527 3527 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1330871582031 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 55.794 1 55.794 55.294 56.294 0 0 0 0 0.40738 1 12142 12142 0.79363 0 1 + 2853 26905 1816 1819 3528 3528 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1337585449219 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 56.017 1 56.017 55.517 56.517 0 0 0 0 0.40738 1 12200 12200 0.79363 0 1 + 2854 26905 1816 1819 3529 3529 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1335144042969 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 56.189 1 56.189 55.689 56.689 0 0 0 0 0.40738 1 12244 12244 0.79363 0 1 + 2855 26905 1816 1819 3530 3530 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1336669921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 58.951 1 58.951 58.451 59.451 0 0 0 0 0.40738 1 13004 13004 0.79363 0 1 + 2856 26905 1816 1819 3531 3531 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1334228515625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 59.184 1 59.184 58.684 59.684 0 0 0 0 0.40738 1 13068 13068 0.79363 0 1 + 2857 26905 1816 1819 3532 3532 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1334228515625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 61.493 1 61.493 60.993 61.993 0 0 0 0 0.40738 1 13689 13689 0.79363 0 1 + 2858 26905 1816 1819 3533 3533 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1333923339844 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 62.047 1 62.047 61.547 62.547 0 0 0 0 0.40738 1 13852 13852 0.79363 0 1 + 2859 26905 1816 1819 3534 3534 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13360595703125 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 64.015 1 64.015 63.515 64.515 0 0 0 0 0.40738 1 14385 14385 0.79363 0 1 + 2860 26905 1816 1819 3535 3535 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1336669921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 67.983 1 67.983 67.483 68.483 0 0 0 0 0.40738 1 15499 15499 0.79363 0 1 + 2861 26905 1816 1819 3536 3536 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 70.407 1 70.407 69.907 70.907 0 0 0 0 0.40738 1 16178 16178 0.79363 0 1 + 2862 26905 1816 1819 3537 3537 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1334533691406 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 71.881 1 71.881 71.381 72.381 0 0 0 0 0.40738 1 16585 16585 0.79363 0 1 + 2863 26905 1816 1819 3538 3538 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.133544921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 77.7 1 77.7 77.2 78.2 0 0 0 0 0.40738 1 18173 18173 0.79363 0 1 + 2864 26905 1816 1819 3539 3539 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1334228515625 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 79.632 1 79.632 79.132 80.132 0 0 0 0 0.40738 1 18716 18716 0.79363 0 1 + 2865 26905 1816 1819 3540 3540 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1335144042969 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 80.492 1 80.492 79.992 80.992 0 0 0 0 0.40738 1 18964 18964 0.79363 0 1 + 2866 26905 1816 1819 3541 3541 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1336669921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 81.16 1 81.16 80.66 81.66 0 0 0 0 0.40738 1 19154 19154 0.79363 0 1 + 2867 26905 1816 1819 3542 3542 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.133544921875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 88.187 1 88.187 87.687 88.687 0 0 0 0 0.40738 1 21167 21167 0.79363 0 1 + 2868 26905 1816 1819 3543 3543 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 90.841 1 90.841 90.341 91.341 0 0 0 0 0.40738 1 21915 21915 0.79363 0 1 + 2869 26905 1816 1819 3544 3544 -0.19059764861140138 DCVCMCVC 8 Unmodified _DCVCMCVC_ 0 0 0 REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense REV__L1MC4_dup3380|chr2:168506927-168507831:-|1.2948185531258565|0.0054347894025907|7.9|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 438.1335754394531 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 94.615 1 94.615 94.115 95.115 0 0 0 0 0.40738 1 22950 22950 0.79363 0 1 + 2870 26905 1816 1819 3545 3545 -0.19059764861140138 DCWIIWNLY 9 Unmodified _DCWIIWNLY_ 0 0 0 L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|92|3|anti-sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|92|3|anti-sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|92|3|anti-sense MSMS UPN47_class_I_Rep_2 3 613.2909545898438 2 613.289159 1224.56377 NaN NaN NaN NaN NaN NaN NaN 53.786 1 57.112 56.612 57.612 3.3266 0 0 0 0.37692 1 12107 12107 6.2058 0 1 2871 9630 1817 1820 3546 3546 -0.03953330257354537 DDCAHRRHNGN 11 Unmodified _DDCAHRRHNGN_ 0 0 0 REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|62|2|sense REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|62|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 647.2747802734375 2 647.776333 1293.53811 0.082652 5.354E-05 0.011627 7.5315E-06 0.094279 6.1072E-05 648.278055604088 41.559 0.044968 45.238 45.214 45.259 3.6792 5 3 2 0 0 0 22.551 1 8362 8362 0 0 1 27573 + 2872 24556 1818 1821 3547 3547 -0.09691411727067134 DDCIDQPR 8 Unmodified _DDCIDQPR_ 0 0 0 REV__ENSG00000077274|ENST00000324068|CAPN6 REV__ENSG00000077274|ENST00000324068|CAPN6 MSMS UPN47_class_I_Rep_2 3 481.2290954589844 2 481.205824 960.397095 NaN NaN NaN NaN NaN NaN NaN 27.773 1 31.271 30.771 31.771 3.4986 0 0 0 0.40746 1 4219 4219 0.69038 0 1 + 2873 17877 1819 1822 3548 3548 -0.08468803153061799 DDDDDCDDDES 11 Unmodified _DDDDDCDDDES_ 0 0 0 REV__ENSG00000189269|ENST00000317749|DRICH1 REV__ENSG00000189269|ENST00000317749|DRICH1 MSMS UPN47_class_I_Rep_3 4 629.664794921875 2 629.662234 1257.30991 NaN NaN NaN NaN NaN NaN NaN 23.59 1 26.941 26.441 27.441 3.3509 0 0 0 0.38417 1 3026 3026 0 0 1 + 2874 21005 1820 1823 3549 3549 -0.30844763466598124 DDDDDDDDCK 10 Unmodified _DDDDDDDDCK_ 0 0 0 nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 MSMS UPN48_class_I_Rep_2 6 585.6713256835938 2 585.672405 1169.33026 NaN NaN NaN NaN NaN NaN NaN 114.67 1 118.33 117.83 118.83 3.6616 0 0 0 0.53105 1 27419 27419 0.35063 0.35063 1 2875 4963 1821 1824 3550 3550 -0.24763548016153436 DDDDDDYYY 9 Unmodified _DDDDDDYYY_ 0 0 0 L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|86|1|anti-sense L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|86|1|anti-sense L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|86|1|anti-sense MSMS UPN47_class_I_Rep_2 3 599.6886596679688 2 599.688381 1197.36221 NaN NaN NaN NaN NaN NaN NaN 59.05 1 62.331 61.831 62.831 3.2818 0 0 0 0.39428 1 13716 13716 2.0598 0 1 2876 9834 1822 1825 3551 3551 -0.22857812270694922 DDDDDDYYY 9 Unmodified _DDDDDDYYY_ 0 0 0 L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|86|1|anti-sense L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|86|1|anti-sense L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|86|1|anti-sense MSMS UPN47_class_I_Rep_3 4 599.6870727539062 2 599.688381 1197.36221 NaN NaN NaN NaN NaN NaN NaN 59.22 1 62.385 61.885 62.885 3.1658 0 0 0 0.38299 1 13820 13820 4.756 0 1 2877 9834 1822 1825 3552 3552 -0.22857812270694922 DDDDWDDWDDG 11 Unmodified _DDDDWDDWDDG_ 0 0 0 ENSG00000173548|ENST00000308527|SNX33 ENSG00000173548|ENST00000308527|SNX33 ENSG00000173548|ENST00000308527|SNX33 MSMS UPN47_class_I_Rep_1 2 456.79656982421875 3 456.809343 1367.4062 NaN NaN NaN NaN NaN NaN NaN 22.714 1 26.418 25.918 26.918 3.7042 0 0 0 0.38417 1 2686 2686 0.094841 0.094841 1 2878 4634 1823 1826 3553 3553 -0.2628082784437993 DDDHNDNDE 9 Unmodified _DDDHNDNDE_ 0 0 0 HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|10|1|sense HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|10|1|sense HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 544.8551635742188 2 544.673596 1087.33264 NaN NaN NaN NaN NaN NaN NaN 112.78 1 112.78 112.28 113.28 0 0 0 0 0.4029 1 27848 27848 0 0 1 2879 7787 1824 1827 3554 3554 -0.20753331496189276 DDDISLEW 8 Unmodified _DDDISLEW_ 0 0 0 REV__ENSG00000185745|ENST00000371804|IFIT1 REV__ENSG00000185745|ENST00000371804|IFIT1 MSMS UPN47_class_I_Rep_2 3 496.7126770019531 2 496.714005 991.413456 NaN NaN NaN NaN NaN NaN NaN 23.585 1 27.051 26.551 27.551 3.4655 0 0 0 0.40746 1 2989 2989 0.69038 0 1 + 2880 20861 1825 1828 3555 3555 -0.0825939871533592 DDDNFEFCC 9 Unmodified _DDDNFEFCC_ 0 0 0 REV__ENST00000512908.2_1_5:70398727-70422449:-|nuORF REV__ENST00000512908.2_1_5:70398727-70422449:-|nuORF MSMS UPN48_class_I_Rep_3 7 554.1758422851562 2 554.173332 1106.33211 NaN NaN NaN NaN NaN NaN NaN 116.95 1 120.59 120.09 121.09 3.6312 0 0 0 0.4007 1 27830 27830 0.52476 0.52476 1 + 2881 21349 1826 1829 3556 3556 -0.21680165741236124 DDDTQEGSFY 10 Unmodified _DDDTQEGSFY_ 0 0 0 REV__ENSG00000153933|ENST00000284061|DGKE REV__ENSG00000153933|ENST00000284061|DGKE MULTI-MSMS UPN47_class_I_Rep_1 2 589.2222290039062 2 588.720015 1175.42548 0.36959 0.00021759 1.0841 0.00063824 1.4537 0.00085583 588.7207019785193 71.752 0.43857 75.127 74.925 75.364 3.3751 59 36 2 0 0 0 0.55148 1 17546 17546 5.2969 1.3525 1 58614 + 2882 19722 1827 1830 3557 3557 -0.15521826762801538 DDDTQEGSFY 10 Unmodified _DDDTQEGSFY_ 0 0 0 REV__ENSG00000153933|ENST00000284061|DGKE REV__ENSG00000153933|ENST00000284061|DGKE MULTI-MSMS UPN47_class_I_Rep_2 3 588.720458984375 2 588.720015 1175.42548 0.42485 0.00025012 1.1702 0.00068891 1.595 0.00093903 588.7208255002698 71.904 0.34677 75.194 74.963 75.31 3.2899 42 26 2 0 0 0 0.4561 3 17616 17575;17610;17616 15.248 6.5031 1 106180 + 2883 19722 1827 1830 3558;3559;3560 3560 -0.15521826762801538 DDDTQEGSFY 10 Unmodified _DDDTQEGSFY_ 0 0 0 REV__ENSG00000153933|ENST00000284061|DGKE REV__ENSG00000153933|ENST00000284061|DGKE MULTI-MSMS UPN47_class_I_Rep_3 4 588.7208862304688 2 588.720015 1175.42548 0.45289 0.00026663 0.9035 0.00053191 1.3564 0.00079853 588.7205967164687 71.938 0.49915 75.156 74.908 75.408 3.2188 62 41 2 0 0 0 0.38974 3 17705 17648;17669;17705 20.415 9.5906 1 97875 + 2884 19722 1827 1830 3561;3562;3563 3563 -0.15521826762801538 DDDYDEEGEE 10 Unmodified _DDDYDEEGEE_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000547969.5_1_12:76443520-76446936:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MSMS UPN47_class_I_Rep_2 3 405.8065490722656 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 62.598 1 65.854 65.354 66.354 3.2558 0 0 0 0.53105 1 14793 14793 0.13989 0 1 2885 5181 1828 1831 3564 3564 -0.22511034967192245 DDDYDEEGEE 10 Unmodified _DDDYDEEGEE_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000547969.5_1_12:76443520-76446936:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MSMS UPN48_class_I_Rep_1 5 405.8068542480469 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 62.381 1 65.844 65.344 66.344 3.4625 0 0 0 0.53105 1 13956 13956 0.13989 0 1 2886 5181 1828 1831 3565 3565 -0.22511034967192245 DDEDDDEEDC 10 Unmodified _DDEDDDEEDC_ 0 0 0 nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2 nc|ENSG00000135250|P78362|SRPK2 nc|ENSG00000135250|P78362|SRPK2 MSMS UPN47_class_I_Rep_2 3 600.1631469726562 2 600.16187 1198.30919 NaN NaN NaN NaN NaN NaN NaN 115.16 1 118.66 118.16 119.16 3.5039 0 0 0 0.53105 1 28069 28069 0 0 1 2887 2892 1829 1832 3566 3566 -0.282035581156606 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_1 5 405.7984924316406 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 112.41 1 116.04 115.54 116.54 3.6321 0 0 0 0.53105 1 27279 27279 0.13989 0 1 + 2888 17944 1830 1833 3567 3567 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_1 5 405.7977294921875 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 113.47 1 117.1 116.6 117.6 3.6314 0 0 0 0.53105 1 27565 27565 0.13989 0 1 + 2889 17944 1830 1833 3568 3568 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.7980651855469 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 30.241 1 33.955 33.455 34.455 3.7146 0 0 0 0.53105 1 4337 4337 0.13989 0 1 + 2890 17944 1830 1833 3569 3569 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.7979431152344 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 111.99 1 115.65 115.15 116.15 3.6614 0 0 0 0.53105 1 26595 26595 0.13989 0 1 + 2891 17944 1830 1833 3570 3570 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.7980041503906 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 112.72 1 116.38 115.88 116.88 3.6568 0 0 0 0.53105 1 26787 26787 0.13989 0 1 + 2892 17944 1830 1833 3571 3571 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.7970275878906 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 116.59 1 120.22 119.72 120.72 3.6312 0 0 0 0.53105 1 27747 27747 0.13989 0 1 + 2893 17944 1830 1833 3572 3572 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.79779052734375 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 117.62 1 121.23 120.73 121.73 3.6124 0 0 0 0.53105 1 27976 27976 0.13989 0 1 + 2894 17944 1830 1833 3573 3573 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.79730224609375 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 118.4 1 121.99 121.49 122.49 3.5847 0 0 0 0.53105 1 28159 28159 0.13989 0 1 + 2895 17944 1830 1833 3574 3574 -0.2251103496723772 DDEDDDESFE 10 Unmodified _DDEDDDESFE_ 0 0 0 REV__ENSG00000084463|ENST00000261167|WBP11 REV__ENSG00000084463|ENST00000261167|WBP11 MSMS UPN48_class_I_Rep_3 7 405.7978210449219 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 119.56 1 123.12 122.62 123.62 3.566 0 0 0 0.53105 1 28413 28413 0.13989 0 1 + 2896 17944 1830 1833 3575 3575 -0.2251103496723772 DDEDFYDEDM 10 Unmodified _DDEDFYDEDM_ 0 0 0 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 MSMS UPN47_class_I_Rep_3 4 647.2088012695312 2 647.208623 1292.40269 NaN NaN NaN NaN NaN NaN NaN 64.749 1 67.929 67.429 68.429 3.1795 0 0 0 0.53105 1 15506 15506 0.40072 0.40072 1 2897 2675 1831 1834 3576 3576 -0.23181213942598333 DDEDRKNP 8 Unmodified _DDEDRKNP_ 0 0 0 ENST00000418132.7_1_17:38296747-38323177:+|nuORF;ENSG00000108349|ENST00000264645|CASC3 ENST00000418132.7_1_17:38296747-38323177:+|nuORF ENST00000418132.7_1_17:38296747-38323177:+|nuORF MSMS UPN47_class_I_Rep_1 2 494.7189025878906 2 494.720153 987.425752 NaN NaN NaN NaN NaN NaN NaN 117.4 1 121 120.5 121.5 3.6036 0 0 0 0.40746 1 29104 29104 0.69038 0.16561 1 2898 1859 1832 1835 3577 3577 -0.06846362252281324 DDEEHSDEYL 10 Unmodified _DDEEHSDEYL_ 0 0 0 REV__nc|ENSG00000279980|Q9BY60|GABARAPL3 REV__nc|ENSG00000279980|Q9BY60|GABARAPL3 MSMS UPN48_class_I_Rep_1 5 626.232177734375 2 626.236029 1250.45751 NaN NaN NaN NaN NaN NaN NaN 112.5 1 116.14 115.64 116.64 3.6321 0 0 0 0.53105 1 27306 27306 1.6526 0 1 + 2899 32126 1833 1836 3578 3578 -0.15770459079635657 DDEFLVKK 8 Unmodified _DDEFLVKK_ 0 0 0 REV__ENSG00000112379|ENST00000251691|ARFGEF3 REV__ENSG00000112379|ENST00000251691|ARFGEF3 MSMS UPN47_class_I_Rep_3 4 497.26776123046875 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 32.268 1 35.555 35.055 36.055 3.2867 0 0 0 0.40746 1 5608 5608 0.69038 0 1 + 2900 18483 1834 1837 3579 3579 0.021303478320646718 DDELEMWF 8 Unmodified _DDELEMWF_ 0 0 0 REV__ENSG00000136169|ENST00000611815|SETDB2 REV__ENSG00000136169|ENST00000611815|SETDB2 MSMS UPN47_class_I_Rep_1 2 542.2792358398438 2 542.718233 1083.42191 NaN NaN NaN NaN NaN NaN NaN 47.776 1 51.462 50.962 51.962 3.6857 0 0 0 0.40738 1 10248 10248 0.79363 0 1 + 2901 19175 1835 1838 3580 3580 -0.11646168070342355 DDEYNLSCLSK 11 Unmodified _DDEYNLSCLSK_ 0 0 0 REV__ENST00000489363.5_2_4:1643022-1645966:-|nuORF REV__ENST00000489363.5_2_4:1643022-1645966:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 643.783447265625 2 643.782093 1285.54963 0.42384 0.00027286 0.34596 0.00022272 0.7698 0.00049559 643.7828517553946 67.99 0.094666 71.355 71.338 71.433 3.3646 11 8 2 0 0 0 0.65821 1 16386 16386 2.4985 0 1 67887 + 2902 20509 1836 1839 3581 3581 -0.08172072266984287 DDFHIYVY 8 Unmodified _DDFHIYVY_ 0 0 0 ENSG00000106723.17,SPIN1,chr9,+,I7.1,88448990,88462495|48|9.71|1|intron;ENSG00000204271|ENST00000374919|SPIN3;ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1 ENSG00000106723.17,SPIN1,chr9,+,I7.1,88448990,88462495|48|9.71|1|intron ENSG00000106723.17,SPIN1,chr9,+,I7.1,88448990,88462495|48|9.71|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 536.2424926757812 2 536.242732 1070.47091 0.3005 0.00016114 0.068622 3.6798E-05 0.36912 0.00019794 536.2427165814515 69.595 0.6884 69.595 69.291 69.98 0 179 71 3 0 0 0 0.82752 2 15929 15929;15968 40.449 14.107 1 698260 2903 1801 1837 1840 3582;3583 3582 -0.06150511719079077 DDFHIYVY 8 Unmodified _DDFHIYVY_ 0 0 0 ENSG00000106723.17,SPIN1,chr9,+,I7.1,88448990,88462495|48|9.71|1|intron;ENSG00000204271|ENST00000374919|SPIN3;ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1 ENSG00000106723.17,SPIN1,chr9,+,I7.1,88448990,88462495|48|9.71|1|intron ENSG00000106723.17,SPIN1,chr9,+,I7.1,88448990,88462495|48|9.71|1|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 536.242732 1070.47091 0.32212 0.00017274 3.452 0.0018511 3.7741 0.0020239 536.2437331757327 66.716 0.030472 69.975 69.963 69.994 3.2588 0.18986 0.0036251 NaN 40.449 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 26219 2904 1801 1837 1840 -0.06150511719079077 DDFRFKDRF 9 Unmodified _DDFRFKDRF_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3 ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 415.871826171875 3 415.871883 1244.59382 0.042078 1.7499E-05 -0.3767 -0.00015666 -0.33462 -0.00013916 415.87177214198937 46.942 0.77201 46.942 46.72 47.492 0 135 75 2 0 0 0 0.071184 3 9665 9665;9707;9750 38.559 30.613 1 1138900 2905 1587 1838 1841 3584;3585;3586 3584 -0.018692552678203356 DDGDDDDDDDN 11 Unmodified _DDGDDDDDDDN_ 0 0 0 REV__nc|ENSG00000106462|Q15910-5|EZH2 REV__nc|ENSG00000106462|Q15910-5|EZH2 MSMS UPN48_class_I_Rep_2 6 613.1837158203125 2 613.165998 1224.31744 NaN NaN NaN NaN NaN NaN NaN 27.743 1 31.374 30.874 31.874 3.6311 0 0 0 0.38417 1 3719 3719 0 0 1 + 2906 18327 1839 1842 3587 3587 -0.28574287874675974 DDGSFVKK 8 Unmodified _DDGSFVKK_ 0 0 0 SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|9|1|sense SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|9|1|sense SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 448.2296142578125 2 448.229625 894.444697 -0.19887 -8.9139E-05 -1.3298 -0.00059603 -1.5286 -0.00068517 448.2294975366465 109.25 0.23851 112.78 112.68 112.92 3.5347 72 31 3 0 0 0 0.82752 1 26830 26830 2.3027 0.65011 1 3428700 2907 32841 1840 1843 3588 3588 -0.006747808905629427 DDGSLVSRNH 10 Unmodified _DDGSLVSRNH_ 0 0 0 REV__nc|ENSG00000166006|Q96PR1-3|KCNC2 REV__nc|ENSG00000166006|Q96PR1-3|KCNC2 MSMS UPN46_class_I_Rep_3 1 550.2589721679688 2 550.259976 1098.5054 NaN NaN NaN NaN NaN NaN NaN 100.14 1 100.14 99.644 100.64 0 0 0 0 0.53105 1 24409 24409 3.2813 2.4877 1 + 2908 20150 1841 1844 3589 3589 -0.0399129557829383 DDGTSVSSM 9 Unmodified _DDGTSVSSM_ 0 0 0 Tigger1_dup9946|chr14:35211506-35213289:-|2.2441827008125967|0.0392571115362255|5.84|151.0|25|2|sense Tigger1_dup9946|chr14:35211506-35213289:-|2.2441827008125967|0.0392571115362255|5.84|151.0|25|2|sense Tigger1_dup9946|chr14:35211506-35213289:-|2.2441827008125967|0.0392571115362255|5.84|151.0|25|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 450.2627258300781 2 449.676565 897.338577 -0.77822 -0.00034995 0.86132 0.00038731 0.083095 3.7366E-05 449.67695818437124 36.418 0.36318 39.673 39.54 39.903 3.2547 35 22 2 0 0 0 0.12321 1 6919 6919 3.9444 1.0552 1 58967 2909 33218 1842 1845 3590 3590 -0.11419904518186286 DDGTSVSSM 9 Unmodified _DDGTSVSSM_ 0 0 0 Tigger1_dup9946|chr14:35211506-35213289:-|2.2441827008125967|0.0392571115362255|5.84|151.0|25|2|sense Tigger1_dup9946|chr14:35211506-35213289:-|2.2441827008125967|0.0392571115362255|5.84|151.0|25|2|sense Tigger1_dup9946|chr14:35211506-35213289:-|2.2441827008125967|0.0392571115362255|5.84|151.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 449.676565 897.338577 -0.56387 -0.00025356 0.45814 0.00020602 -0.10573 -4.7543E-05 449.67677840061003 36.307 0.32563 39.718 39.571 39.897 3.4114 0.022628 -0.00012681 NaN 3.9444 31 24 2 NaN NaN NaN NaN 0 NaN NaN 0 71345 2910 33218 1842 1845 -0.11419904518186286 DDHLQDHLEN 10 Unmodified _DDHLQDHLEN_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MSMS UPN47_class_I_Rep_1 2 618.2655029296875 2 618.267998 1234.52144 NaN NaN NaN NaN NaN NaN NaN 54.508 1 58.01 57.51 58.51 3.5014 0 0 0 0.53105 1 12300 12300 1.4819 0.79152 1 2911 5764 1843 1846 3591 3591 -0.08643634132022271 DDKLQLLTR 9 Unmodified _DDKLQLLTR_ 0 0 0 REV__L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|50|3|anti-sense REV__L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_1 5 551.3172607421875 2 551.316763 1100.61897 NaN NaN NaN NaN NaN NaN NaN 34.574 1 38.088 37.588 38.588 3.5144 0 0 0 0.3824 1 5548 5548 4.897 0.95262 1 + 2912 24566 1844 1847 3592 3592 0.07268799534745085 DDKRPPPPY 9 Unmodified _DDKRPPPPY_ 0 0 0 ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6 ENST00000489330.6_1_X:11156985-11160533:-|nuORF ENST00000489330.6_1_X:11156985-11160533:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 542.775146484375 2 542.774731 1083.53491 0.37874 0.00020557 0.13245 7.1892E-05 0.51119 0.00027746 542.7746073238702 56.592 0.64719 59.765 59.266 59.913 3.1721 73 39 3 0 0 0 0.11021 1 13056 13056 14.838 1.3304 1 332100 2913 890 1845 1848 3593 3593 -0.0035173156215932977 DDLRYGVY 8 Unmodified _DDLRYGVY_ 0 0 0 nc|ENSG00000172687|Q8NE65-2|ZNF738;ENSG00000172687|ENST00000683779|ZNF738 nc|ENSG00000172687|Q8NE65-2|ZNF738 nc|ENSG00000172687|Q8NE65-2|ZNF738 MSMS UPN46_class_I_Rep_3 1 500.7418518066406 2 500.740357 999.46616 NaN NaN NaN NaN NaN NaN NaN 20.754 1 20.754 20.254 21.254 0 0 0 0 0.39996 1 2210 2210 7.9102 1.7044 1 2914 4587 1846 1849 3594 3594 -0.03359395861855319 DDMDGGDWSF 10 Unmodified _DDMDGGDWSF_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN47_class_I_Rep_1 2 572.696044921875 2 572.698029 1143.3815 NaN NaN NaN NaN NaN NaN NaN 119.24 1 122.85 122.35 123.35 3.6036 0 0 0 0.53105 1 29624 29624 1.6526 0.85899 1 2915 1371 1847 1850 3595 3595 -0.18445134460762347 DDMDGGDWSF 10 Unmodified _DDMDGGDWSF_ 0 0 0 nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN48_class_I_Rep_2 6 572.6970825195312 2 572.698029 1143.3815 NaN NaN NaN NaN NaN NaN NaN 75.562 1 79.163 78.663 79.663 3.6011 0 0 0 0.53105 1 17822 17822 0.40072 0.050084 1 2916 1371 1847 1850 3596 3596 -0.18445134460762347 DDNSREPLPP 10 Unmodified _DDNSREPLPP_ 0 0 0 LTR33A__dup1367|chr15:63222024-63222448:+|1.00609378428972|0.0143210107227894|6.13|149.0|27|3|anti-sense LTR33A__dup1367|chr15:63222024-63222448:+|1.00609378428972|0.0143210107227894|6.13|149.0|27|3|anti-sense LTR33A__dup1367|chr15:63222024-63222448:+|1.00609378428972|0.0143210107227894|6.13|149.0|27|3|anti-sense MSMS UPN47_class_I_Rep_1 2 570.271240234375 2 570.27001 1138.52547 NaN NaN NaN NaN NaN NaN NaN 36.457 1 40.127 39.627 40.627 3.6692 0 0 0 0.53105 1 6806 6806 1.3295 0.13619 1 2917 15623 1848 1851 3597 3597 -0.03825544638334577 DDPDYNPADPE 11 Unmodified _DDPDYNPADPE_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1;nc|ENSG00000111832|Q9H446-2|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MSMS UPN47_class_I_Rep_3 4 624.2362670898438 2 624.238572 1246.46259 NaN NaN NaN NaN NaN NaN NaN 58.611 1 61.777 61.277 62.277 3.1658 0 0 0 0.38417 1 13632 13632 1.1933 0.59184 1 2918 1990 1849 1852 3598 3598 -0.1507815521702014 DDPDYNPADPE 11 Unmodified _DDPDYNPADPE_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1;nc|ENSG00000111832|Q9H446-2|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MSMS UPN48_class_I_Rep_1 5 624.2363891601562 2 624.238572 1246.46259 NaN NaN NaN NaN NaN NaN NaN 113.99 1 117.62 117.12 118.12 3.6301 0 0 0 0.38417 1 27701 27701 1.1933 0.59184 1 2919 1990 1849 1852 3599 3599 -0.1507815521702014 DDPDYNPADPE 11 Unmodified _DDPDYNPADPE_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1;nc|ENSG00000111832|Q9H446-2|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MSMS UPN48_class_I_Rep_1 5 624.2364501953125 2 624.238572 1246.46259 NaN NaN NaN NaN NaN NaN NaN 117.71 1 121.33 120.83 121.83 3.6215 0 0 0 0.38417 1 28688 28688 1.1933 0.59184 1 2920 1990 1849 1852 3600 3600 -0.1507815521702014 DDPGSVTYTW 10 Unmodified _DDPGSVTYTW_ 0 0 0 ENST00000392619.1_3_17:72619797-72619845:-|nuORF ENST00000392619.1_3_17:72619797-72619845:-|nuORF ENST00000392619.1_3_17:72619797-72619845:-|nuORF MSMS UPN47_class_I_Rep_2 3 570.7438354492188 2 570.745836 1139.47712 NaN NaN NaN NaN NaN NaN NaN 27.172 1 30.671 30.171 31.171 3.4986 0 0 0 0.53105 1 4040 4040 3.5965 1.019 1 2921 6525 1850 1853 3601 3601 -0.08704038278233384 DDPHPHPS 8 Unmodified _DDPHPHPS_ 0 0 0 REV__LTR12E_dup49|chr5:70585287-70586406:-|4.9867319070746525|0.2859469218237075|4.12|151.0|35|2|anti-sense REV__LTR12E_dup49|chr5:70585287-70586406:-|4.9867319070746525|0.2859469218237075|4.12|151.0|35|2|anti-sense MSMS UPN46_class_I_Rep_3 1 451.1937561035156 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 48.568 1 48.568 48.068 49.068 0 0 0 0 0.40604 1 10130 10130 2.5775 0 1 + 2922 30823 1851 1854 3602 3602 -0.08157695244278784 DDQIFSYLT 9 Unmodified _DDQIFSYLT_ 0 0 0 L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 551.2583618164062 2 551.258579 1100.50261 0.41799 0.00023042 -0.36155 -0.00019931 0.056438 3.1112E-05 551.2584842157887 62.949 0.41544 66.204 65.961 66.376 3.2558 36 25 2 0 0 0 0.43982 1 14894 14894 5.7319 0.97584 1 99851 2923 11741 1852 1855 3603 3603 -0.04362563755807969 DDQIFSYLT 9 Unmodified _DDQIFSYLT_ 0 0 0 L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 551.258056640625 2 551.258579 1100.50261 0.4071 0.00022442 -0.20654 -0.00011386 0.20056 0.00011056 551.2585663788984 63.012 0.52795 66.181 65.905 66.433 3.1698 46 32 2 0 0 0 0.11884 1 14960 14960 9.3831 0 1 55523 2924 11741 1852 1855 3604 3604 -0.04362563755807969 DDQIFSYLT 9 Unmodified _DDQIFSYLT_ 0 0 0 L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|117|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 551.258579 1100.50261 0.41799 0.00023042 -0.36155 -0.00019931 0.056438 3.1112E-05 551.2584842157887 62.949 0.41544 66.204 65.961 66.376 3.2558 0.011485 -6.9998E-05 NaN 9.3831 36 25 2 NaN NaN NaN NaN 0 NaN NaN 0 99851 2925 11741 1852 1855 -0.04362563755807969 DDQYREERWN 10 Unmodified _DDQYREERWN_ 0 0 0 REV__nc|ENSG00000144893|Q86YW9-4|MED12L REV__nc|ENSG00000144893|Q86YW9-4|MED12L MSMS UPN48_class_I_Rep_3 7 470.8731384277344 3 470.872612 1409.59601 NaN NaN NaN NaN NaN NaN NaN 15.91 1 19.449 18.949 19.949 3.5392 0 0 0 0.53105 1 692 692 0.12286 0.039514 1 + 2926 17448 1853 1856 3605 3605 -0.09240871320662336 DDRRRLLS 8 Unmodified _DDRRRLLS_ 0 0 0 nc|ENSG00000155307|Q9NSI8-2|SAMSN1;ENSG00000155307|ENST00000400566|SAMSN1;nc|ENSG00000155307|Q9NSI8-3|SAMSN1 nc|ENSG00000155307|Q9NSI8-2|SAMSN1 nc|ENSG00000155307|Q9NSI8-2|SAMSN1 MSMS UPN47_class_I_Rep_1 2 515.7932739257812 2 515.791247 1029.56794 NaN NaN NaN NaN NaN NaN NaN 41.212 1 44.884 44.384 45.384 3.6719 0 0 0 0.40625 1 8251 8251 2.3027 0 1 2927 3699 1854 1857 3606 3606 0.05433895280566503 DDSCRESDED 10 Unmodified _DDSCRESDED_ 0 0 0 REV__ENSG00000167981|ENST00000301744|ZNF597 REV__ENSG00000167981|ENST00000301744|ZNF597 MSMS UPN46_class_I_Rep_3 1 585.6942749023438 2 585.696214 1169.37788 NaN NaN NaN NaN NaN NaN NaN 119.31 1 119.31 118.81 119.81 0 0 0 0 0.53105 1 29651 29651 1.6526 0 1 + 2928 20250 1855 1858 3607 3607 -0.2000384902528367 DDSDDEENSP 10 Unmodified _DDSDDEENSP_ 0 0 0 REV__ENST00000586344.5_1_19:5917623-5933521:-|nuORF REV__ENST00000586344.5_1_19:5917623-5933521:-|nuORF MSMS UPN46_class_I_Rep_3 1 561.6885986328125 2 561.688912 1121.36327 NaN NaN NaN NaN NaN NaN NaN 92.986 1 92.986 92.486 93.486 0 0 0 0 0.53105 1 22522 22522 0.40072 0 1 + 2929 17627 1856 1859 3608 3608 -0.19255597901792498 DDSSQCVFK 9 Unmodified _DDSSQCVFK_ 0 0 0 ENSG00000178163|ENST00000326756|ZNF518B ENSG00000178163|ENST00000326756|ZNF518B ENSG00000178163|ENST00000326756|ZNF518B MSMS UPN47_class_I_Rep_3 4 514.7228393554688 2 514.721307 1027.42806 NaN NaN NaN NaN NaN NaN NaN 41.363 1 44.6 44.1 45.1 3.2372 0 0 0 0.39518 1 8384 8384 1.8442 0.19162 1 2930 4814 1857 1860 3609 3609 -0.08455649838833779 DDVDRAKYY 9 Unmodified _DDVDRAKYY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN47_class_I_Rep_1 2 572.7671508789062 2 572.767103 1143.51965 NaN NaN NaN NaN NaN NaN NaN 48.626 1 52.308 51.808 52.808 3.6819 0 0 0 0.38639 1 10506 10506 3.9444 1.0552 1 2931 5749 1858 1861 3610 3610 -0.046366431500018734 DDVEFISDL 9 Unmodified _DDVEFISDL_ 0 0 0 nc|ENSG00000099954|Q9BXF3-2|CECR2;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3-2|CECR2 nc|ENSG00000099954|Q9BXF3-2|CECR2 MSMS UPN48_class_I_Rep_1 5 526.7430419921875 2 526.742762 1051.47097 NaN NaN NaN NaN NaN NaN NaN 65.787 1 69.239 68.739 69.739 3.4516 0 0 0 0.35339 1 14993 14993 7.9102 0 1 2932 1455 1859 1862 3611 3611 -0.052705565097539875 DDVSHSVWYR 10 Unmodified _DDVSHSVWYR_ 0 0 0 REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|208|1|anti-sense REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|208|1|anti-sense MSMS UPN47_class_I_Rep_1 2 632.28857421875 2 632.291276 1262.568 NaN NaN NaN NaN NaN NaN NaN 56.134 1 59.613 59.113 60.113 3.4785 0 0 0 0.53105 1 12797 12797 1.3295 0 1 + 2933 23904 1860 1863 3612 3612 -0.05278149510104413 DDWETDPDFV 10 Unmodified _DDWETDPDFV_ 0 0 0 nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN nc|ENSG00000085733|Q14247-3|CTTN nc|ENSG00000085733|Q14247-3|CTTN MSMS UPN47_class_I_Rep_3 4 619.745361328125 2 619.746033 1237.47751 NaN NaN NaN NaN NaN NaN NaN 30.918 1 34.229 33.729 34.729 3.3116 0 0 0 0.53105 1 5201 5201 1.4819 0.28856 1 2934 1267 1861 1864 3613 3613 -0.13172663349041613 DDWGDVDSTM 10 Unmodified _DDWGDVDSTM_ 0 0 0 ENSG00000070019|ENST00000261170|GUCY2C ENSG00000070019|ENST00000261170|GUCY2C ENSG00000070019|ENST00000261170|GUCY2C MSMS UPN47_class_I_Rep_3 4 570.713134765625 2 570.711136 1139.40772 NaN NaN NaN NaN NaN NaN NaN 113.96 1 117.46 116.96 117.96 3.4963 0 0 0 0.53105 1 27970 27970 3.5965 1.9439 1 2935 1064 1862 1865 3614 3614 -0.15640865289310568 DDWTPWHTWL 10 Unmodified _DDWTPWHTWL_ 0 0 0 REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|30|1|sense REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|30|1|sense MSMS UPN47_class_I_Rep_1 2 452.8703918457031 3 452.871772 1355.59349 NaN NaN NaN NaN NaN NaN NaN 83.171 1 86.709 86.209 87.209 3.5386 0 0 0 0.53105 1 20795 20795 0.77653 0.078866 1 + 2936 23941 1863 1866 3615 3615 -0.07008674987673658 DDYHGNEDT 9 Unmodified _DDYHGNEDT_ 0 0 0 L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|23|1|anti-sense L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|23|1|anti-sense L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_1 5 533.1908569335938 2 533.191425 1064.3683 NaN NaN NaN NaN NaN NaN NaN 98.388 1 101.99 101.49 102.49 3.6065 0 0 0 0.4007 1 23743 23743 0.52476 0 1 2937 12328 1864 1867 3616 3616 -0.16131249248519453 DDYTSYRKV 9 Unmodified _DDYTSYRKV_ 0 0 0 REV__nc|ENSG00000109079|Q13829-2|TNFAIP1 REV__nc|ENSG00000109079|Q13829-2|TNFAIP1 MSMS UPN48_class_I_Rep_3 7 573.77734375 2 573.774928 1145.5353 NaN NaN NaN NaN NaN NaN NaN 119.25 1 122.82 122.32 123.32 3.566 0 0 0 0.39428 1 28345 28345 2.0598 1.2661 1 + 2938 18401 1865 1868 3617 3617 -0.03164356632964882 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN46_class_I_Rep_3 1 553.7326049804688 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 118.24 1 118.24 117.74 118.74 0 0 0 0 0.40746 1 29342 29342 0.69038 0.088878 1 2939 13122 1866 1869 3618 3618 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_1 2 554.176025390625 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 114.24 1 117.82 117.32 118.32 3.5809 0 0 0 0.40798 1 28223 28223 0 0 1 2940 13122 1866 1869 3619 3619 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_1 2 554.1760864257812 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 115.14 1 118.72 118.22 119.22 3.5809 0 0 0 0.40738 1 28476 28476 0.79363 0.19213 1 2941 13122 1866 1869 3620 3620 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_2 3 554.1756591796875 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 118.41 1 121.89 121.39 122.39 3.4822 0 0 0 0.40798 1 28973 28973 0 0 1 2942 13122 1866 1869 3621 3621 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.1749267578125 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 23.434 1 26.784 26.284 27.284 3.3503 0 0 0 0.40798 1 2979 2979 0 0 1 2943 13122 1866 1869 3622 3622 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.1755981445312 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 116.33 1 119.8 119.3 120.3 3.462 0 0 0 0.40798 1 28624 28624 0 0 1 2944 13122 1866 1869 3623 3623 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1757202148438 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 16.576 1 20.098 19.598 20.598 3.5217 0 0 0 0.40798 1 835 835 0 0 1 2945 13122 1866 1869 3624 3624 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 553.7284545898438 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 17.123 1 20.649 20.149 21.149 3.5261 0 0 0 0.40798 1 943 943 0 0 1 2946 13122 1866 1869 3625 3625 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1754150390625 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 18.421 1 21.952 21.452 22.452 3.5313 0 0 0 0.40798 1 1239 1239 0 0 1 2947 13122 1866 1869 3626 3626 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1756591796875 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 18.563 1 22.095 21.595 22.595 3.5313 0 0 0 0.40798 1 1271 1271 0 0 1 2948 13122 1866 1869 3627 3627 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.175537109375 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 18.851 1 22.382 21.882 22.882 3.5313 0 0 0 0.40798 1 1333 1333 0 0 1 2949 13122 1866 1869 3628 3628 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1756591796875 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 19.736 1 23.274 22.774 23.774 3.5378 0 0 0 0.40798 1 1547 1547 0 0 1 2950 13122 1866 1869 3629 3629 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1754760742188 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 20.379 1 23.924 23.424 24.424 3.5454 0 0 0 0.40798 1 1706 1706 0 0 1 2951 13122 1866 1869 3630 3630 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1759643554688 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 20.83 1 24.376 23.876 24.876 3.5454 0 0 0 0.40798 1 1814 1814 0 0 1 2952 13122 1866 1869 3631 3631 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1753540039062 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 22.164 1 25.718 25.218 26.218 3.5533 0 0 0 0.40798 1 2129 2129 0 0 1 2953 13122 1866 1869 3632 3632 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1755981445312 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 26.42 1 29.986 29.486 30.486 3.5667 0 0 0 0.40798 1 3241 3241 0 0 1 2954 13122 1866 1869 3633 3633 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.175537109375 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 17.074 1 20.725 20.225 21.225 3.6518 0 0 0 0.40798 1 941 941 0 0 1 2955 13122 1866 1869 3634 3634 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1753540039062 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 17.255 1 20.907 20.407 21.407 3.6518 0 0 0 0.40798 1 978 978 0 0 1 2956 13122 1866 1869 3635 3635 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1749267578125 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 18.518 1 22.169 21.669 22.669 3.6509 0 0 0 0.40798 1 1254 1254 0 0 1 2957 13122 1866 1869 3636 3636 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1749877929688 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 23.067 1 26.71 26.21 27.21 3.6432 0 0 0 0.40798 1 2454 2454 0 0 1 2958 13122 1866 1869 3637 3637 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1757202148438 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 114.79 1 118.45 117.95 118.95 3.6616 0 0 0 0.40798 1 27452 27452 0 0 1 2959 13122 1866 1869 3638 3638 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.176025390625 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 116.47 1 120.13 119.63 120.63 3.6607 0 0 0 0.40798 1 27898 27898 0 0 1 2960 13122 1866 1869 3639 3639 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1768188476562 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 117.51 1 121.17 120.67 121.67 3.6607 0 0 0 0.40798 1 28166 28166 0 0 1 2961 13122 1866 1869 3640 3640 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.1753540039062 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 19.778 1 23.399 22.899 23.899 3.6215 0 0 0 0.40798 1 1560 1560 0 0 1 2962 13122 1866 1869 3641 3641 -0.21278076247540412 DDYYYYCC 8 Unmodified _DDYYYYCC_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.1746826171875 2 554.175343 1106.33613 NaN NaN NaN NaN NaN NaN NaN 114.76 1 118.41 117.91 118.91 3.6511 0 0 0 0.40746 1 27296 27296 0.69038 0.16561 1 2963 13122 1866 1869 3642 3642 -0.21278076247540412 DEAAFLERL 9 Unmodified _DEAAFLERL_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1 ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MSMS UPN46_class_I_Rep_3 1 532.2750244140625 2 532.274564 1062.53457 NaN NaN NaN NaN NaN NaN NaN 70.258 1 70.258 69.758 70.758 0 0 0 0 0.18341 1 16137 16137 17.443 3.9348 1 2964 2397 1867 1870 3643 3643 0.00580848718004745 DEAAFQKL 8 Unmodified _DEAAFQKL_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS UPN46_class_I_Rep_3 1 461.2374572753906 2 461.23745 920.460347 0.18702 8.6259E-05 0.040589 1.8721E-05 0.22761 0.00010498 461.2373243843098 44.97 0.7957 44.97 44.633 45.428 0 176 75 3 0 0 0 4.8589E-10 4 9090 9058;9090;9126;9234 156.16 70.799 1 845210 2965 5284 1868 1871 3644;3645;3646;3647 3645 -0.003064943735239467 DEAEVHLKF 9 Unmodified _DEAEVHLKF_ 0 0 0 GAS7|p.K295Sfs*10|1|0.06|ENSG00000007237|chr17:9934169-9934169|G/-|frameshift_variant;nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7 GAS7|p.K295Sfs*10|1|0.06|ENSG00000007237|chr17:9934169-9934169|G/-|frameshift_variant GAS7|p.K295Sfs*10|1|0.06|ENSG00000007237|chr17:9934169-9934169|G/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 544.2744140625 2 544.274564 1086.53457 0.32833 0.0001787 -0.042694 -2.3237E-05 0.28564 0.00015547 544.2744248695896 49.074 0.53339 49.074 48.816 49.35 0 87 49 2 0 0 0 0.019142 3 10253 10253;10290;10325 63.961 31.175 1 473240 2966 729 1869 1872 3648;3649;3650 3648 -0.005231512819818818 DEAGNQKTKH 10 Unmodified _DEAGNQKTKH_ 0 0 0 L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|190|3|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|190|3|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|190|3|sense MSMS UPN48_class_I_Rep_1 5 564.2755126953125 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 113.82 1 117.45 116.95 117.95 3.6314 0 0 0 0.53105 1 27659 27659 1.4819 0.28856 1 2967 14801 1870 1873 3651 3651 -0.021507225442064737 DEAKFPTM 8 Oxidation (M) _DEAKFPTM(Oxidation (M))_ DEAKFPTM(1) DEAKFPTM(52) 0 0 1 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MULTI-MSMS UPN46_class_I_Rep_3 1 477.7154541015625 2 477.715493 953.416433 0.097587 4.6619E-05 -0.29943 -0.00014304 -0.20185 -9.6425E-05 477.7153129253679 34.367 0.91375 34.367 34.072 34.986 0 131 65 3 0 0 0 0.82752 3 6077 6077;6123;6163 69.105 21.356 1 249430 2968 4059 1871 1874 3652;3653;3654 3652 129 -0.06213846862158334 DEALIGKKF 9 Unmodified _DEALIGKKF_ 0 0 0 nc|ENSG00000173575|O14647-3|CHD2;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2 nc|ENSG00000173575|O14647-3|CHD2 nc|ENSG00000173575|O14647-3|CHD2 MULTI-MSMS UPN47_class_I_Rep_1 2 510.7900695800781 2 510.78985 1019.56515 -0.18044 -9.2169E-05 -0.23579 -0.00012044 -0.41623 -0.00021261 510.7898854352381 37.402 0.51785 41.067 40.878 41.395 3.6652 51 35 2 0 0 0 0.14216 1 7103 7103 26.268 4.5215 1 77401 2969 4635 1872 1875 3655 3655 0.05614627103057046 DEALIGKKF 9 Unmodified _DEALIGKKF_ 0 0 0 nc|ENSG00000173575|O14647-3|CHD2;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2 nc|ENSG00000173575|O14647-3|CHD2 nc|ENSG00000173575|O14647-3|CHD2 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7902526855469 2 510.78985 1019.56515 -0.26761 -0.00013669 0.34701 0.00017725 0.079408 4.0561E-05 510.7899644794554 37.708 0.55875 41.096 40.927 41.485 3.3879 59 43 2 0 0 0 0.19147 1 7227 7227 21.537 4.5947 1 56091 2970 4635 1872 1875 3656 3656 0.05614627103057046 DEALIGKKF 9 Unmodified _DEALIGKKF_ 0 0 0 nc|ENSG00000173575|O14647-3|CHD2;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2 nc|ENSG00000173575|O14647-3|CHD2 nc|ENSG00000173575|O14647-3|CHD2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 510.78985 1019.56515 -0.24334 -0.00012429 -0.063464 -3.2417E-05 -0.3068 -0.00015671 510.78992685343206 37.902 0.52296 41.143 40.898 41.421 3.2414 0.04075 -1.3835E-05 NaN 26.268 58 40 2 NaN NaN NaN NaN 0 NaN NaN 0 67247 2971 4635 1872 1875 0.05614627103057046 DEALVVHF 8 Unmodified _DEALVVHF_ 0 0 0 REV__ENSG00000166813|ENST00000394412|KIF7 REV__ENSG00000166813|ENST00000394412|KIF7 MULTI-MSMS UPN48_class_I_Rep_2 6 465.2424011230469 2 465.239993 928.465432 0.18632 8.6686E-05 1.3471 0.00062671 1.5334 0.00071339 465.2406785307325 74.815 0.56664 78.404 78.075 78.642 3.59 96 65 2 0 0 0 0.82752 1 17574 17574 2.8892 0.31174 1 233400 + 2972 20189 1873 1876 3657 3657 -0.0016619051090174253 DEAPPEHSF 9 Unmodified _DEAPPEHSF_ 0 0 0 nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2 nc|ENSG00000141298|Q76I76|SSH2 nc|ENSG00000141298|Q76I76|SSH2 MULTI-MSMS UPN46_class_I_Rep_3 1 514.7191162109375 2 514.719621 1027.42469 0.18515 9.5302E-05 0.32738 0.00016851 0.51253 0.00026381 514.719882388718 35.534 0.68256 35.534 35.306 35.989 0 81 46 3 0 0 0 0.15122 4 6504 6447;6457;6504;6552 25.399 9.5521 1 147390 2973 3212 1874 1877 3658;3659;3660;3661 3660 -0.0879257662118107 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS UPN46_class_I_Rep_3 1 588.7990112304688 2 588.798403 1175.58225 0.46823 0.00027569 0.037782 2.2246E-05 0.50602 0.00029794 588.7984441033417 61.099 0.48111 61.099 60.857 61.338 0 88 60 2 0 0 0 0.1396 2 13571 13571;13606 68.76 48.345 1 533330 2974 1341 1875 1878 3662;3663 3662 0.0014850291820494022 DEAPVLDVRY 10 Unmodified _DEAPVLDVRY_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MSMS UPN46_class_I_Rep_3 1 588.7990112304688 2 588.798403 1175.58225 NaN NaN NaN NaN NaN NaN NaN 60.942 1 60.942 60.442 61.442 0 0 0 0 0.53105 1 13540 13540 30.703 19.904 1 2975 1341 1875 1878 3664 3664 0.0014850291820494022 DEAQAFRAL 9 Unmodified _DEAQAFRAL_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN46_class_I_Rep_3 1 510.7590026855469 2 510.759081 1019.50361 NaN NaN NaN NaN NaN NaN NaN 52.537 1 52.537 52.037 53.037 0 0 0 0 0.001059 1 11239 11239 61.602 43.467 1 2976 797 1876 1879 3665 3665 -0.005363045962326396 DEARSLKAY 9 Unmodified _DEARSLKAY_ 0 0 0 ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX ENST00000464196.5_1_Y:22749894-22750047:+|nuORF ENST00000464196.5_1_Y:22749894-22750047:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 526.8215942382812 2 526.772188 1051.52982 0.043195 2.2754E-05 -0.29068 -0.00015312 -0.24748 -0.00013037 526.7720076715439 28.687 0.30802 28.687 28.554 28.862 0 25 23 2 0 0 0 0.12207 1 4438 4438 5.7319 1.4026 1 50386 2977 4643 1877 1880 3666 3666 0.006119645752505676 DEARVKYLF 9 Unmodified _DEARVKYLF_ 0 0 0 REV__L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|288|2|anti-sense REV__L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|288|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8067626953125 2 570.806031 1139.59751 0.60619 0.00034602 0.36871 0.00021046 0.9749 0.00055648 570.8063686471123 55.793 0.47583 59.349 58.989 59.465 3.5559 49 30 2 0 0 0 0.48846 1 11901 11901 1.8442 0 1 114770 + 2978 30440 1878 1881 3667 3667 0.0332941450603812 DEAVLFVQV 9 Unmodified _DEAVLFVQV_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MULTI-MSMS UPN47_class_I_Rep_1 2 510.2737121582031 2 510.274032 1018.53351 0.29489 0.00015047 -0.47117 -0.00024043 -0.17628 -8.9953E-05 510.27376481360375 84.233 0.15369 87.798 87.671 87.825 3.5655 34 18 2 0 0 0 0.14216 1 21065 21065 26.268 2.2476 1 126940 2979 5077 1879 1882 3668 3668 0.024986343491036678 DECSTMCS 8 Unmodified _DECSTMCS_ 0 0 0 REV__nc|ENSG00000196844|Q6UY27-2|PATE2 REV__nc|ENSG00000196844|Q6UY27-2|PATE2 MSMS UPN46_class_I_Rep_3 1 438.13348388671875 2 438.132621 874.25069 NaN NaN NaN NaN NaN NaN NaN 44.109 1 44.109 43.609 44.609 0 0 0 0 0.40604 1 8862 8862 2.5775 0.27475 1 + 2980 21056 1880 1883 3669 3669 -0.1914656470482896 DECWCQSCGPE 11 Unmodified _DECWCQSCGPE_ 0 0 0 REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF MSMS UPN47_class_I_Rep_1 2 628.7055053710938 2 628.704473 1255.39439 NaN NaN NaN NaN NaN NaN NaN 117.03 1 120.63 120.13 121.13 3.6036 0 0 0 0.38417 1 28998 28998 1.3295 0 1 + 2981 20251 1881 1884 3670 3670 -0.22308762664533788 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_1 2 612.1805419921875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.611 1 18.086 17.586 18.586 3.475 0 0 0 0.38417 1 607 607 0.30703 0.30703 1 + 2982 20452 1882 1885 3671 3671 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_2 3 612.180419921875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.751 1 20.138 19.638 20.638 3.3864 0 0 0 0.38417 1 1125 1125 0.30703 0.30703 1 + 2983 20452 1882 1885 3672 3672 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_3 4 612.1824951171875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 111.38 1 114.9 114.4 115.4 3.5207 0 0 0 0.38417 1 27338 27338 0.30703 0.30703 1 + 2984 20452 1882 1885 3673 3673 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_3 4 612.1820678710938 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 117.95 1 121.37 120.87 121.87 3.4238 0 0 0 0.38417 1 29076 29076 0.30703 0.30703 1 + 2985 20452 1882 1885 3674 3674 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_3 4 612.1802368164062 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 119.77 1 123.19 122.69 123.69 3.4157 0 0 0 0.38417 1 29592 29592 0.30703 0.30703 1 + 2986 20452 1882 1885 3675 3675 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.180419921875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 13.301 1 16.814 16.314 17.314 3.5133 0 0 0 0.38417 1 219 219 0.30703 0.30703 1 + 2987 20452 1882 1885 3676 3676 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1806640625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 13.986 1 17.501 17.001 18.001 3.5156 0 0 0 0.38417 1 333 333 0.30703 0.30703 1 + 2988 20452 1882 1885 3677 3677 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1820068359375 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.273 1 17.789 17.289 18.289 3.5156 0 0 0 0.38417 1 388 388 0.30703 0.30703 1 + 2989 20452 1882 1885 3678 3678 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.181640625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.704 1 18.22 17.72 18.72 3.5156 0 0 0 0.38417 1 464 464 0.30703 0.30703 1 + 2990 20452 1882 1885 3679 3679 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1819458007812 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.825 1 18.343 17.843 18.843 3.5184 0 0 0 0.38417 1 484 484 0.30703 0.30703 1 + 2991 20452 1882 1885 3680 3680 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1817626953125 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.943 1 18.461 17.961 18.961 3.5184 0 0 0 0.38417 1 507 507 0.30703 0.30703 1 + 2992 20452 1882 1885 3681 3681 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1815185546875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 15.441 1 18.96 18.46 19.46 3.5184 0 0 0 0.38417 1 610 610 0.30703 0.30703 1 + 2993 20452 1882 1885 3682 3682 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.180419921875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 15.561 1 19.079 18.579 19.579 3.5184 0 0 0 0.38417 1 631 631 0.30703 0.30703 1 + 2994 20452 1882 1885 3683 3683 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1818237304688 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 15.679 1 19.198 18.698 19.698 3.5184 0 0 0 0.38417 1 656 656 0.30703 0.30703 1 + 2995 20452 1882 1885 3684 3684 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1817016601562 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.181 1 19.703 19.203 20.203 3.5217 0 0 0 0.38417 1 753 753 0.30703 0.30703 1 + 2996 20452 1882 1885 3685 3685 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1817016601562 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.84 1 20.362 19.862 20.862 3.5217 0 0 0 0.38417 1 885 885 0.30703 0.30703 1 + 2997 20452 1882 1885 3686 3686 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1821899414062 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.968 1 20.494 19.994 20.994 3.5261 0 0 0 0.38417 1 909 909 0.30703 0.30703 1 + 2998 20452 1882 1885 3687 3687 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1820678710938 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 17.56 1 21.086 20.586 21.586 3.5261 0 0 0 0.38417 1 1038 1038 0.30703 0.30703 1 + 2999 20452 1882 1885 3688 3688 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1808471679688 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 17.682 1 21.208 20.708 21.708 3.5261 0 0 0 0.38417 1 1064 1064 0.30703 0.30703 1 + 3000 20452 1882 1885 3689 3689 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.181640625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 17.808 1 21.334 20.834 21.834 3.5261 0 0 0 0.38417 1 1095 1095 0.30703 0.30703 1 + 3001 20452 1882 1885 3690 3690 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1805419921875 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 18.754 1 22.285 21.785 22.785 3.5313 0 0 0 0.38417 1 1314 1314 0.30703 0.30703 1 + 3002 20452 1882 1885 3691 3691 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1820068359375 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 18.962 1 22.493 21.993 22.993 3.5313 0 0 0 0.38417 1 1361 1361 0.30703 0.30703 1 + 3003 20452 1882 1885 3692 3692 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1820068359375 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 19.494 1 23.032 22.532 23.532 3.5378 0 0 0 0.38417 1 1488 1488 0.30703 0.30703 1 + 3004 20452 1882 1885 3693 3693 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1820678710938 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 114.01 1 117.64 117.14 118.14 3.6301 0 0 0 0.38417 1 27707 27707 0.30703 0.30703 1 + 3005 20452 1882 1885 3694 3694 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1820068359375 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 117.26 1 120.88 120.38 121.38 3.6215 0 0 0 0.38417 1 28572 28572 0.26902 0.26902 1 + 3006 20452 1882 1885 3695 3695 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.18212890625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 119.5 1 123.12 122.62 123.62 3.6189 0 0 0 0.38417 1 29167 29167 0.30703 0.30703 1 + 3007 20452 1882 1885 3696 3696 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1818237304688 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.686 1 18.34 17.84 18.84 3.6542 0 0 0 0.38417 1 487 487 0.30703 0.30703 1 + 3008 20452 1882 1885 3697 3697 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1819458007812 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 15.417 1 19.07 18.57 19.57 3.6535 0 0 0 0.38417 1 626 626 0.30703 0.30703 1 + 3009 20452 1882 1885 3698 3698 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1808471679688 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 15.739 1 19.393 18.893 19.893 3.6535 0 0 0 0.38417 1 686 686 0.30703 0.30703 1 + 3010 20452 1882 1885 3699 3699 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.181884765625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 17.029 1 20.681 20.181 21.181 3.6518 0 0 0 0.38417 1 932 932 0.30703 0.30703 1 + 3011 20452 1882 1885 3700 3700 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1818237304688 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 17.225 1 20.877 20.377 21.377 3.6518 0 0 0 0.38417 1 972 972 0.30703 0.30703 1 + 3012 20452 1882 1885 3701 3701 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.181884765625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 18.226 1 21.877 21.377 22.377 3.6509 0 0 0 0.38417 1 1187 1187 0.30703 0.30703 1 + 3013 20452 1882 1885 3702 3702 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1802978515625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 116.67 1 120.33 119.83 120.83 3.6607 0 0 0 0.38417 1 27950 27950 0.26902 0.26902 1 + 3014 20452 1882 1885 3703 3703 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1802368164062 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 13.64 1 17.171 16.671 17.671 3.5314 0 0 0 0.38417 1 284 284 0.30703 0.30703 1 + 3015 20452 1882 1885 3704 3704 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1804809570312 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.181 1 17.715 17.215 18.215 3.5341 0 0 0 0.38417 1 380 380 0.30703 0.30703 1 + 3016 20452 1882 1885 3705 3705 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1801147460938 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.336 1 17.871 17.371 18.371 3.5341 0 0 0 0.38417 1 406 406 0.30703 0.30703 1 + 3017 20452 1882 1885 3706 3706 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1815795898438 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 14.47 1 18.004 17.504 18.504 3.5341 0 0 0 0.38417 1 428 428 0.30703 0.30703 1 + 3018 20452 1882 1885 3707 3707 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1815795898438 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.102 1 19.651 19.151 20.151 3.5486 0 0 0 0.38417 1 729 729 0.30703 0.30703 1 + 3019 20452 1882 1885 3708 3708 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1817016601562 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.559 1 20.108 19.608 20.608 3.5486 0 0 0 0.38417 1 820 820 0.30703 0.30703 1 + 3020 20452 1882 1885 3709 3709 -0.2953604792196529 DEDCMCSCCSQ 11 Unmodified _DEDCMCSCCSQ_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_3 7 612.1814575195312 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 16.713 1 20.261 19.761 20.761 3.5486 0 0 0 0.38417 1 850 850 0.30703 0.30703 1 + 3021 20452 1882 1885 3710 3710 -0.2953604792196529 DEDEDENLFSF 11 Unmodified _DEDEDENLFSF_ 0 0 0 REV__ENST00000564616.1_1_16:67576996-67577373:+|nuORF REV__ENST00000564616.1_1_16:67576996-67577373:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.8439025878906 3 453.845617 1358.51502 NaN NaN NaN NaN NaN NaN NaN 94.649 1 98.4 97.9 98.9 3.7508 0 0 0 0.38417 1 23510 23510 0.45452 0 1 + 3022 17644 1883 1886 3711 3711 -0.1498961687409519 DEDEDVQVEE 10 Unmodified _DEDEDVQVEE_ 0 0 0 ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000219481.10,NBPF1,chr1,-,I21.1,16577420,16579192|49|3.35|3|intron;ENSG00000270231.4,NBPF8,chr1,+,I8.1,120441490,120442840|30|5.66|3|intron;nc|ENSG00000263956|Q86T75-2|NBPF11;ENSG00000219481.10,NBPF1,chr1,-,I21.1,16577420,16579192|49|3.35|2|intron ENSG00000263956|ENST00000682118|NBPF11 ENSG00000263956|ENST00000682118|NBPF11 MSMS UPN46_class_I_Rep_3 1 603.736083984375 2 603.735862 1205.45717 NaN NaN NaN NaN NaN NaN NaN 118.16 1 118.16 117.66 118.66 0 0 0 0 0.53105 1 29317 29317 1.6526 0 1 3023 5793 1884 1887 3712 3712 -0.13733878799507693 DEDEEDNLF 9 Unmodified _DEDEEDNLF_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C nc|ENSG00000172661|Q9Y4E1-3|WASHC2C nc|ENSG00000172661|Q9Y4E1-3|WASHC2C MSMS UPN46_class_I_Rep_3 1 563.2244262695312 2 563.214566 1124.41458 NaN NaN NaN NaN NaN NaN NaN 69.479 1 69.479 68.979 69.979 0 0 0 0 0.28335 1 15924 15924 11.64 0 1 3024 1433 1885 1888 3713 3713 -0.1426522913707231 DEDIFRYLT 9 Unmodified _DEDIFRYLT_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MULTI-MSMS UPN47_class_I_Rep_1 2 586.2857666015625 2 586.285128 1170.5557 0.29473 0.0001728 -0.82348 -0.00048279 -0.52875 -0.00031 586.2844867512227 52.283 1.5444 55.842 55.368 56.912 3.5585 283 111 4 0 0 0 0.46434 1 11940 11940 4.3292 0 1 1503800 3025 5040 1886 1889 3714 3714 -0.02275185973144289 DEDSDDYDGE 10 Unmodified _DEDSDDYDGE_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS UPN47_class_I_Rep_3 4 580.1808471679688 2 580.18092 1158.34729 0.46028 0.00026705 -0.25213 -0.00014628 0.20815 0.00012077 580.1807372864281 75.278 0.90211 78.524 78.178 79.08 3.2464 284 85 5 0 0 0 0.56486 1 18615 18615 0.40072 0.40072 1 860170 3026 1127 1887 1890 3715 3715 -0.22555304138700194 DEDSLVSHF 9 Unmodified _DEDSLVSHF_ 0 0 0 nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NSD1-NUP98|2|fusion;nc|ENSG00000110713|P52948-6|NUP98;NSD1-NUP98|1|fusion nc|ENSG00000110713|P52948-2|NUP98 nc|ENSG00000110713|P52948-2|NUP98 MSMS UPN46_class_I_Rep_3 1 524.7327270507812 2 524.732729 1047.4509 NaN NaN NaN NaN NaN NaN NaN 56.865 1 56.865 56.365 57.365 0 0 0 0 0.011423 1 12428 12428 56.177 29.293 1 3027 1949 1888 1891 3716 3716 -0.0709230744969318 DEEDEYHRKRS 11 Unmodified _DEEDEYHRKRS_ 0 0 0 REV__ENSG00000163161|ENST00000285398|ERCC3 REV__ENSG00000163161|ENST00000285398|ERCC3 MSMS UPN48_class_I_Rep_1 5 488.5559387207031 3 488.555171 1462.64368 NaN NaN NaN NaN NaN NaN NaN 81.626 1 85.193 84.693 85.693 3.5671 0 0 0 0.38417 1 19470 19470 0.45452 0.29519 1 + 3028 19968 1889 1892 3717 3717 -0.06913217120495574 DEEDTEDGVSF 11 Unmodified _DEEDTEDGVSF_ 0 0 0 ENSG00000185436|ENST00000327535|IFNLR1;nc|ENSG00000185436|Q8IU57-2|IFNLR1 ENSG00000185436|ENST00000327535|IFNLR1 ENSG00000185436|ENST00000327535|IFNLR1 MSMS UPN48_class_I_Rep_3 7 621.7355346679688 2 621.735862 1241.45717 NaN NaN NaN NaN NaN NaN NaN 66.679 1 70.187 69.687 70.687 3.5077 0 0 0 0.38417 1 15163 15163 4.897 0 1 3029 5103 1890 1893 3718 3718 -0.1538987879951037 DEEEEGYDDD 10 Unmodified _DEEEEGYDDD_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MSMS UPN48_class_I_Rep_3 7 405.79840087890625 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 30.441 1 34.155 33.655 34.655 3.7146 0 0 0 0.53105 1 4391 4391 0.13989 0 1 3030 2487 1891 1894 3719 3719 -0.22511034967214982 DEEFSLRPLN 10 Unmodified _DEEFSLRPLN_ 0 0 0 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 REV__nc|ENSG00000165509|Q8TD91-2|MAGEC3 MSMS UPN48_class_I_Rep_2 6 406.865478515625 3 407.203299 1218.58807 NaN NaN NaN NaN NaN NaN NaN 60.361 1 63.839 63.339 64.339 3.4785 0 0 0 0.53105 1 13323 13323 0.56317 0 1 + 3031 32044 1892 1895 3720 3720 -0.012483985701237543 DEEGKGAVY 9 Unmodified _DEEGKGAVY_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS UPN46_class_I_Rep_3 1 484.22198486328125 2 484.221997 966.429441 -0.090413 -4.378E-05 -0.11041 -5.3463E-05 -0.20082 -9.7243E-05 484.221742079712 25.151 0.14452 25.151 25.066 25.21 0 24 13 2 0 0 0 0.13244 1 3404 3404 27.629 7.1752 1 57965 3032 738 1893 1896 3721 3721 -0.05511692478421537 DEEGKGAVY 9 Unmodified _DEEGKGAVY_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS UPN46_class_I_Rep_3 1 484.2212829589844 2 484.221997 966.429441 -0.086086 -4.1685E-05 0.032839 1.5902E-05 -0.053247 -2.5783E-05 484.2219825020659 25.357 0.33579 25.357 25.21 25.546 0 43 30 2 0 0 0 0.16559 2 3442 3442;3487 24.021 7.0783 1 68141 3033 738 1893 1896 3722;3723 3722 -0.05511692478421537 DEEGLKLTF 9 Unmodified _DEEGLKLTF_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS UPN46_class_I_Rep_3 1 526.2686157226562 2 526.268947 1050.52334 0.27639 0.00014545 -0.1179 -6.2045E-05 0.15849 8.341E-05 526.2687149514092 67.026 0.34459 67.026 66.865 67.209 0 56 32 2 0 0 0 0.0055879 3 15254 15212;15254;15285 80.676 42.5 1 721010 3034 1537 1894 1897 3724;3725;3726 3725 0.00010026623840531101 DEEGLKLTF 9 Unmodified _DEEGLKLTF_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS UPN46_class_I_Rep_3 1 526.2687377929688 2 526.268947 1050.52334 0.27702 0.00014578 -0.04058 -2.1356E-05 0.23644 0.00012443 526.268840603111 67.269 0.17702 67.269 67.199 67.376 0 30 17 2 0 0 0 0.062142 1 15323 15323 43.772 18.373 1 485010 3035 1537 1894 1897 3727 3727 0.00010026623840531101 DEEHVDIE 8 Unmodified _DEEHVDIE_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENSG00000174197.16,MGA,chr15,+,I16.1,41736699,41739905|67|9.84|6|intron;ENSG00000174197.16,MGA,chr15,+,I16.1,41736699,41739905|67|9.84|3|intron nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS UPN48_class_I_Rep_1 5 493.2089538574219 2 493.209086 984.40362 NaN NaN NaN NaN NaN NaN NaN 119.1 1 122.72 122.22 123.22 3.6189 0 0 0 0.40746 1 29064 29064 0.69038 0 1 3036 4669 1895 1898 3728 3728 -0.08920586720705614 DEEIKRAY 8 Unmodified _DEEIKRAY_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS UPN46_class_I_Rep_3 1 512.2596435546875 2 512.258914 1022.50327 -0.034963 -1.791E-05 -0.27714 -0.00014197 -0.31211 -0.00015988 512.2588016810411 25.77 0.52148 25.77 25.458 25.979 0 71 46 2 0 0 0 0.82752 2 3558 3558;3577 30.637 13.694 1 88287 3037 2729 1896 1899 3729;3730 3729 -0.007077243161006663 DEEVFFQL 8 Unmodified _DEEVFFQL_ 0 0 0 nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2 nc|ENSG00000158941|Q8N163-2|CCAR2 nc|ENSG00000158941|Q8N163-2|CCAR2 MSMS UPN46_class_I_Rep_3 1 513.7427978515625 2 513.742565 1025.47058 NaN NaN NaN NaN NaN NaN NaN 90.677 1 90.677 90.177 91.177 0 0 0 0 0.36226 1 21870 21870 19.257 7.6167 1 3038 3816 1897 1900 3731 3731 -0.04113931438951113 DEEVFFQL 8 Unmodified _DEEVFFQL_ 0 0 0 nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2 nc|ENSG00000158941|Q8N163-2|CCAR2 nc|ENSG00000158941|Q8N163-2|CCAR2 MSMS UPN46_class_I_Rep_3 1 513.742431640625 2 513.742565 1025.47058 NaN NaN NaN NaN NaN NaN NaN 90.864 1 90.864 90.364 91.364 0 0 0 0 0.27177 1 21922 21922 36.127 20.28 1 3039 3816 1897 1900 3732 3732 -0.04113931438951113 DEFEFLEKA 9 Unmodified _DEFEFLEKA_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENST00000570473.5_1_17:54973221-54981672:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS UPN46_class_I_Rep_3 1 564.266357421875 2 564.266404 1126.51826 0.40272 0.00022724 -0.075862 -4.2806E-05 0.32686 0.00018443 564.2661994046462 69.091 0.71454 69.091 68.883 69.597 0 147 74 3 0 0 0 0.01093 2 15817 15817;15853 69.338 52.225 1 397540 3040 2347 1898 1901 3733;3734 3733 -0.03994277238757604 DEFIIKTV 8 Unmodified _DEFIIKTV_ 0 0 0 nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A nc|ENSG00000186111|O60331-4|PIP5K1C nc|ENSG00000186111|O60331-4|PIP5K1C MULTI-MSMS UPN46_class_I_Rep_3 1 482.77099609375 2 482.771126 963.527698 0.20083 9.6955E-05 -0.77621 -0.00037473 -0.57538 -0.00027778 482.7708460098949 61.318 0.36905 61.318 61.212 61.581 0 48 38 2 0 0 0 0.82752 2 13616 13616;13662 45.74 18.111 1 155420 3041 5140 1899 1902 3735;3736 3735 0.044475358374370444 DEFIVRKSL 9 Unmodified _DEFIVRKSL_ 0 0 0 REV__L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|70|2|sense REV__L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|70|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.8128662109375 2 553.813856 1105.61316 -0.050761 -2.8112E-05 0.39396 0.00021818 0.34319 0.00019007 553.8137395186986 39.036 0.78481 42.274 41.939 42.724 3.238 73 54 2 0 0 0 0.47197 1 7722 7722 3.5965 0.31518 1 59363 + 3042 25628 1900 1903 3737 3737 0.06457701023077789 DEFKELVY 8 Unmodified _DEFKELVY_ 0 0 0 ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6;ENST00000478914.1_1_22:42052971-42057696:+|nuORF ENSG00000196419|ENST00000360079|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 MULTI-SECPEP UPN46_class_I_Rep_3 1 521.9913330078125 2 521.758215 1041.50188 0.25237 0.00013168 -0.13621 -7.1069E-05 0.11616 6.0607E-05 521.7580763325408 60.435 0.38684 60.435 60.122 60.509 0 76 46 2 0 0 0 0.72333 1 13394 13394 24.021 9.1823 1 157170 3043 5303 1901 1904 3738 3738 -0.017213584048704433 DEFKIGELF 9 Unmodified _DEFKIGELF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN46_class_I_Rep_3 1 549.2793579101562 2 549.279315 1096.54408 0.39014 0.0002143 -0.079887 -4.388E-05 0.31025 0.00017042 549.2792473350655 83.318 0.29303 83.318 83.23 83.523 0 41 29 3 0 0 0 0.061655 1 19777 19777 43.982 19.961 1 127060 3044 5749 1902 1905 3739 3739 -0.0003338299648021348 DEFKIGELF 9 Unmodified _DEFKIGELF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN46_class_I_Rep_3 1 549.27978515625 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 82.879 1 82.879 82.379 83.379 0 0 0 0 0.093407 1 19656 19656 26.021 13.78 1 3045 5749 1902 1905 3740 3740 -0.0003338299648021348 DEFKIGELF 9 Unmodified _DEFKIGELF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN46_class_I_Rep_3 1 549.279541015625 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 83.006 1 83.006 82.506 83.506 0 0 0 0 0.026555 1 19690 19690 49.527 24.536 1 3046 5749 1902 1905 3741 3741 -0.0003338299648021348 DEFKVVVV 8 Unmodified _DEFKVVVV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS UPN46_class_I_Rep_3 1 467.76580810546875 2 467.765843 933.517133 0.16558 7.7451E-05 -0.014312 -6.6946E-06 0.15127 7.0757E-05 467.76574551268243 63.19 0.62785 63.19 62.889 63.517 0 117 68 2 0 0 0 0.82752 4 14127 14127;14166;14203;14242 56.177 27.69 1 909300 3047 4928 1903 1906 3742;3743;3744;3745 3742 0.04771553183002197 DEFLHINDF 9 Unmodified _DEFLHINDF_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS UPN46_class_I_Rep_3 1 575.2644653320312 2 575.264196 1148.51384 0.4618 0.00026566 -0.1326 -7.6277E-05 0.32921 0.00018938 575.2640889798761 75.447 0.39389 75.447 75.311 75.705 0 70 38 2 0 0 0 0.0069835 1 17534 17534 121.53 69.266 1 153440 3048 1140 1904 1907 3746 3746 -0.0544774166166917 DEFLRISTA 9 Unmodified _DEFLRISTA_ 0 0 0 ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000476196.5_1_20:57478538-57485881:+|nuORF ENST00000476196.5_1_20:57478538-57485881:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 526.2745361328125 2 526.274564 1050.53457 0.25189 0.00013256 0.055698 2.9312E-05 0.30758 0.00016187 526.2745322898597 58.871 0.56687 58.871 58.672 59.239 0 116 62 2 0 0 0 0.006587 3 13002 12965;13002;13048 84.522 40.75 1 776100 3049 1302 1905 1908 3747;3748;3749 3748 0.011328487179980584 DEFLSRLNY 9 Unmodified _DEFLSRLNY_ 0 0 0 ENSG00000198883|ENST00000535214|PNMA5 ENSG00000198883|ENST00000535214|PNMA5 ENSG00000198883|ENST00000535214|PNMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 579.2868041992188 2 578.785296 1155.55604 0.43307 0.00025065 -0.40418 -0.00023393 0.028892 1.6722E-05 578.7850620256147 61.648 0.40405 61.648 61.485 61.889 0 71 38 2 0 0 0 0.36392 1 13792 13792 10.074 0 1 372390 3050 5479 1906 1909 3750 3750 -0.015517662533056864 DEFPEVYRF 9 Unmodified _DEFPEVYRF_ 0 0 0 ENST00000604689.1_1_6:112397497-112397677:-|nuORF;ENSG00000074935|ENST00000368662|TUBE1 ENST00000604689.1_1_6:112397497-112397677:-|nuORF ENST00000604689.1_1_6:112397497-112397677:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 601.2808227539062 2 601.279846 1200.54514 0.54719 0.00032902 0.13858 8.3327E-05 0.68577 0.00041234 601.7813121562084 71.756 0.47056 71.756 71.584 72.055 0 64 40 3 0 0 0 0.12096 3 16550 16550;16584;16624 29.841 18.2 1 351210 3051 1137 1907 1910 3751;3752;3753 3751 -0.04711168627591178 DEFPMRPVPD 10 Unmodified _DEFPMRPVPD_ 0 0 0 REV__nc|ENSG00000116698|Q92540-5|SMG7 REV__nc|ENSG00000116698|Q92540-5|SMG7 MSMS UPN46_class_I_Rep_3 1 601.7815551757812 2 601.779156 1201.54376 NaN NaN NaN NaN NaN NaN NaN 71.62 1 71.62 71.12 72.12 0 0 0 0 0.53105 1 16509 16509 5.7319 1.4026 1 + 3052 18612 1908 1911 3754 3754 -0.048951259879686404 DEFSDFDRL 9 Unmodified _DEFSDFDRL_ 0 0 0 ENST00000586194.1_1_19:56204029-56204606:+|nuORF;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1 ENST00000586194.1_1_19:56204029-56204606:+|nuORF ENST00000586194.1_1_19:56204029-56204606:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 572.2512817382812 2 572.251286 1142.48802 0.4293 0.00024567 0.020612 1.1795E-05 0.44991 0.00025746 572.251281311002 68.502 0.52161 68.502 68.235 68.757 0 77 55 2 0 0 0 0.023676 2 15622 15622;15657 61.09 17.318 1 199670 3053 984 1909 1912 3755;3756 3755 -0.07752635903943883 DEFTCMDCGS 10 Unmodified _DEFTCMDCGS_ 0 0 0 ENSG00000198822|ENST00000361669|GRM3 ENSG00000198822|ENST00000361669|GRM3 ENSG00000198822|ENST00000361669|GRM3 MSMS UPN48_class_I_Rep_2 6 554.1758422851562 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 20.024 1 23.674 23.174 24.174 3.6497 0 0 0 0.53105 1 1642 1642 0.40072 0.40072 1 3054 5466 1910 1913 3757 3757 -0.21343238958866095 DEFTFVKL 8 Unmodified _DEFTFVKL_ 0 0 0 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 MULTI-MSMS UPN46_class_I_Rep_3 1 499.7634582519531 2 499.7633 997.512048 0.27734 0.0001386 0.076203 3.8084E-05 0.35354 0.00017669 499.76320097559767 74.876 0.32562 74.876 74.591 74.917 0 103 38 4 0 0 0 0.82752 2 17352 17352;17384 92.491 48.084 1 848050 3055 2008 1911 1914 3758;3759 3758 0.013192493203860067 DEFTFVKL 8 Unmodified _DEFTFVKL_ 0 0 0 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 MULTI-MSMS UPN46_class_I_Rep_3 1 499.7633056640625 2 499.7633 997.512048 0.27787 0.00013887 0.10755 5.3748E-05 0.38542 0.00019262 499.7632752345267 74.949 0.40762 74.949 74.903 75.311 0 74 43 3 0 0 0 0.82752 3 17416 17416;17452;17489 92.491 48.084 1 672940 3056 2008 1911 1914 3760;3761;3762 3760 0.013192493203860067 DEFTHLYTL 9 Unmodified _DEFTHLYTL_ 0 0 0 ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MULTI-MSMS UPN46_class_I_Rep_3 1 569.7747802734375 2 569.774396 1137.53424 0.42747 0.00024356 0.032573 1.856E-05 0.46004 0.00026212 569.7743601084898 70.884 0.34965 70.884 70.675 71.025 0 48 36 2 0 0 0 0.21527 2 16297 16297;16333 19.257 10.512 1 173580 3057 4853 1912 1915 3763;3764 3763 -0.029025710018458994 DEFTVIGQAPA 11 Unmodified _DEFTVIGQAPA_ 0 0 0 REV__ENSG00000152454|ENST00000282308|ZNF256 REV__ENSG00000152454|ENST00000282308|ZNF256 MULTI-MSMS UPN48_class_I_Rep_3 7 574.285400390625 2 574.285128 1146.5557 0.33596 0.00019294 0.23471 0.00013479 0.57067 0.00032773 574.2852729636159 52.732 0.62491 56.33 56.08 56.705 3.5979 49 40 2 0 0 0 0.59712 1 10898 10898 5.2969 0 1 122120 + 3058 19680 1913 1916 3765 3765 -0.01171185973134925 DEFYKTPSL 9 Unmodified _DEFYKTPSL_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;ENST00000483212.1_1_3:49315728-49316342:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MSMS UPN46_class_I_Rep_3 1 550.2691650390625 2 550.268947 1098.52334 NaN NaN NaN NaN NaN NaN NaN 58.559 1 58.559 58.059 59.059 0 0 0 0 0.040938 1 12896 12896 40.239 16.219 1 3059 2073 1914 1917 3766 3766 -0.021979733761327225 DEGCWRGHW 9 Unmodified _DEGCWRGHW_ 0 0 0 REV__nc|ENSG00000123612|Q8NER5-3|ACVR1C REV__nc|ENSG00000123612|Q8NER5-3|ACVR1C MSMS UPN46_class_I_Rep_3 1 573.2332153320312 2 573.232707 1144.45086 NaN NaN NaN NaN NaN NaN NaN 99.828 1 99.828 99.328 100.33 0 0 0 0 0.4007 1 24329 24329 0.52476 0 1 + 3060 18787 1915 1918 3767 3767 -0.11558585930697518 DEGGLKLTF 9 Unmodified _DEGGLKLTF_ 0 0 0 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant MSMS UPN46_class_I_Rep_3 1 490.2584533691406 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 66.061 1 66.061 65.561 66.561 0 0 0 0 0.21832 1 14967 14967 15.248 1.3424 1 3061 543 1916 1919 3768 3768 0.012100613149982564 DEGIDECHLK 10 Unmodified _DEGIDECHLK_ 0 0 0 REV__ENSG00000109436|ENST00000442267|TBC1D9 REV__ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS UPN46_class_I_Rep_3 1 579.7617797851562 2 579.75842 1157.50229 0.50891 0.00029504 2.3914 0.0013865 2.9003 0.0016815 579.7599664774489 86.446 0.17908 86.446 86.308 86.487 0 24 23 2 0 0 0 0.30128 1 20665 20665 32.786 0.4802 1 422410 + 3062 18404 1917 1920 3769 3769 -0.07016306747323142 DEGIQLALYV 10 Unmodified _DEGIQLALYV_ 0 0 0 MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|77|1|anti-sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|77|1|anti-sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|77|1|anti-sense MSMS UPN46_class_I_Rep_3 1 560.7980346679688 2 560.797872 1119.58119 NaN NaN NaN NaN NaN NaN NaN 88.633 1 88.633 88.133 89.133 0 0 0 0 0.53105 1 21295 21295 1.4819 0 1 3063 16062 1918 1921 3770 3770 0.02618288549274439 DEGKVIRF 8 Unmodified _DEGKVIRF_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS UPN46_class_I_Rep_3 1 482.2667236328125 2 482.266542 962.51853 0.2409 0.00011618 0.04435 2.1389E-05 0.28525 0.00013757 482.26646497883706 40.296 0.9425 40.296 39.971 40.914 0 250 108 3 0 0 0 0.82752 6 7765 7765;7796;7827;7857;7875;7896 99.755 34.52 1 1092000 3064 947 1919 1922 3771;3772;3773;3774;3775;3776 3771 0.03577187271753246 DEGSEEGKRLH 11 Unmodified _DEGSEEGKRLH_ 0 0 0 REV__L1MA1_dup249|chr1:213153898-213155854:-|1.4841577453191763|0.0198969829587692|6.22|151.0|7|1|sense REV__L1MA1_dup249|chr1:213153898-213155854:-|1.4841577453191763|0.0198969829587692|6.22|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 628.7968139648438 2 628.796923 1255.57929 NaN NaN NaN NaN NaN NaN NaN 57.934 1 61.448 60.948 61.948 3.5142 0 0 0 0.38417 1 12573 12573 1.3295 0.13619 1 + 3065 24783 1920 1923 3777 3777 -0.03827372206592372 DEHALIQQY 9 Unmodified _DEHALIQQY_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MSMS UPN46_class_I_Rep_3 1 558.7678833007812 2 558.769645 1115.52474 NaN NaN NaN NaN NaN NaN NaN 48.075 1 48.075 47.575 48.575 0 0 0 0 0.058622 1 9986 9986 34.402 8.1336 1 3066 3633 1921 1924 3778 3778 -0.028403392873542543 DEHALIQQY 9 Unmodified _DEHALIQQY_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MSMS UPN46_class_I_Rep_3 1 558.7691040039062 2 558.769645 1115.52474 NaN NaN NaN NaN NaN NaN NaN 48.267 1 48.267 47.767 48.767 0 0 0 0 0.10941 1 10042 10042 22.736 2.3217 1 3067 3633 1921 1924 3779 3779 -0.028403392873542543 DEHEVNNTF 9 Unmodified _DEHEVNNTF_ 0 0 0 nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2 nc|ENSG00000132359|Q684P5-3|RAP1GAP2 nc|ENSG00000132359|Q684P5-3|RAP1GAP2 MULTI-MSMS UPN46_class_I_Rep_3 1 553.2362670898438 2 552.73326 1103.45197 0.24776 0.00013694 0.22305 0.00012329 0.47081 0.00026023 552.7332360082087 34.458 0.4233 34.458 34.291 34.715 0 39 30 2 0 0 0 0.38714 2 6171 6130;6171 8.7454 3.0136 1 78455 3068 2748 1922 1925 3780;3781 3781 -0.09562093080808154 DEHEWPIP 8 Unmodified _DEHEWPIP_ 0 0 0 REV__ENSG00000173250|ENST00000311104|GPR151 REV__ENSG00000173250|ENST00000311104|GPR151 MSMS UPN47_class_I_Rep_3 4 511.743896484375 2 511.732532 1021.45051 NaN NaN NaN NaN NaN NaN NaN 32.631 1 35.918 35.418 36.418 3.2867 0 0 0 0.40738 1 5719 5719 0.79363 0 1 + 3069 20480 1923 1926 3782 3782 -0.05935682378890306 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MSMS UPN46_class_I_Rep_3 1 602.7598876953125 2 602.759475 1203.5044 NaN NaN NaN NaN NaN NaN NaN 43.825 1 43.825 43.325 44.325 0 0 0 0 0.0014295 1 8782 8782 57.722 30.838 1 3070 5222;5291 1924 1927 3783 3783 -0.08921554737844417 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MSMS UPN46_class_I_Rep_3 1 602.7582397460938 2 602.759475 1203.5044 NaN NaN NaN NaN NaN NaN NaN 43.945 1 43.945 43.445 44.445 0 0 0 0 0.077509 1 8814 8814 24.991 12.75 1 3071 5222;5291 1924 1927 3784 3784 -0.08921554737844417 DEHGIDPTGTY 11 Unmodified _DEHGIDPTGTY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MSMS UPN46_class_I_Rep_3 1 602.760009765625 2 602.759475 1203.5044 NaN NaN NaN NaN NaN NaN NaN 43.964 1 43.964 43.464 44.464 0 0 0 0 0.2482 1 8820 8820 15.248 8.5253 1 3072 5222;5291 1924 1927 3785 3785 -0.08921554737844417 DEHHFVAV 8 Unmodified _DEHHFVAV_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS UPN46_class_I_Rep_3 1 477.2275695800781 2 477.227417 952.44028 0.15234 7.27E-05 -0.055887 -2.6671E-05 0.096452 4.6029E-05 477.2272757600221 36.885 0.87589 36.885 36.578 37.454 0 139 83 2 0 0 0 0.82752 3 6844 6844;6884;6916 36.044 23.513 1 320810 3073 3539 1925 1928 3786;3787;3788 3786 -0.03784245313477186 DEHINVAF 8 Unmodified _DEHINVAF_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-SECPEP UPN46_class_I_Rep_3 1 472.9709777832031 2 472.727249 943.439946 0.16283 7.6976E-05 0.10077 4.7639E-05 0.26361 0.00012461 472.72720054657566 55.92 0.68209 55.92 55.63 56.312 0 177 80 3 0 0 0 0.72333 1 12225 12225 12.532 0.89125 1 1084300 3074 3550 1926 1929 3789 3789 -0.03403665033329162 DEHKDIQSCT 10 Unmodified _DEHKDIQSCT_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MSMS UPN47_class_I_Rep_1 2 588.2539672851562 2 588.253502 1174.49245 NaN NaN NaN NaN NaN NaN NaN 69.884 1 73.252 72.752 73.752 3.3678 0 0 0 0.53105 1 16957 16957 2.7352 0.23671 1 3075 2061 1927 1930 3790 3790 -0.08781494752702201 DEHLEHED 8 Unmodified _DEHLEHED_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MSMS UPN47_class_I_Rep_3 4 512.2040405273438 2 512.204335 1022.39412 NaN NaN NaN NaN NaN NaN NaN 100.32 1 103.76 103.26 104.26 3.4483 0 0 0 0.40404 1 24790 24790 5.2307 0 1 3076 5444 1928 1931 3791 3791 -0.11618355006226011 DEHLITFF 8 Unmodified _DEHLITFF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN46_class_I_Rep_3 1 511.2530822753906 2 511.2531 1020.49165 0.30498 0.00015592 -0.30709 -0.000157 -0.0021064 -1.0769E-06 511.2529644374094 80.728 0.71089 80.728 80.46 81.171 0 190 74 4 0 0 0 0.82752 2 19022 19022;19060 57.471 13.064 1 2289500 3077 3340 1929 1932 3792;3793 3792 -0.01777921339430577 DEHLYVAF 8 Unmodified _DEHLYVAF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS UPN46_class_I_Rep_3 1 497.23809814453125 2 497.23745 992.460347 0.24865 0.00012364 0.43316 0.00021538 0.6818 0.00033902 497.23770856517547 66.013 0.53461 66.013 65.749 66.283 0 73 53 2 0 0 0 0.82752 1 14997 14997 24.674 9.8356 1 208820 3078 1564 1930 1933 3794 3794 -0.03618494373529302 DEHPNVIRY 9 Unmodified _DEHPNVIRY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583077.1_1_17:62131582-62132105:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-SECPEP UPN46_class_I_Rep_3 1 571.7368774414062 2 571.783087 1141.55162 0.37939 0.00021693 -0.038958 -2.2276E-05 0.34044 0.00019466 571.7830575348447 37.388 0.40662 37.388 37.076 37.482 0 63 39 2 0 0 0 0.10629 1 6986 6986 17.113 7.039 1 86309 3079 4828 1931 1934 3795 3795 -0.013492306761918371 DEIISEERF 9 Unmodified _DEIISEERF_ 0 0 0 ENSG00000174233|ENST00000357869|ADCY6;nc|ENSG00000174233|O43306-2|ADCY6 ENSG00000174233|ENST00000357869|ADCY6 ENSG00000174233|ENST00000357869|ADCY6 MULTI-MSMS UPN46_class_I_Rep_3 1 569.2742919921875 2 569.274761 1136.53497 0.39321 0.00022384 -0.35883 -0.00020427 0.034378 1.9571E-05 569.274603716762 54.515 0.33107 54.515 54.404 54.735 0 47 38 2 0 0 0 0.19092 1 11798 11798 21.59 10.095 1 263940 3080 4672 1932 1935 3796 3796 -0.02783776352816858 DEIQGTSY 8 Unmodified _DEIQGTSY_ 0 0 0 REV__ENSG00000121864|ENST00000496856|ZNF639 REV__ENSG00000121864|ENST00000496856|ZNF639 MULTI-MSMS UPN46_class_I_Rep_3 1 456.70025634765625 2 456.700897 911.387241 -0.25139 -0.00011481 0.67618 0.00030881 0.42478 0.000194 456.7005494654445 21.152 0.36882 21.152 21.055 21.424 0 53 39 2 0 0 0 0.82752 1 2379 2379 4.3292 0 1 46560 + 3081 18733 1933 1936 3797 3797 -0.0719966788678903 DEIQVQVF 8 Unmodified _DEIQVQVF_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN46_class_I_Rep_3 1 489.2508850097656 2 489.250557 976.486562 0.25433 0.00012443 -0.12299 -6.0172E-05 0.13134 6.4258E-05 489.2504528762046 73.211 0.39784 73.211 73.056 73.454 0 72 43 2 0 0 0 0.82752 2 16960 16960;16995 29.082 8.628 1 208110 3082 2735 1934 1937 3798;3799 3798 -0.00262225202038735 DEISFVNF 8 Unmodified _DEISFVNF_ 0 0 0 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 485.7294616699219 2 485.729458 969.444362 0.28155 0.00013676 0.0033628 1.6334E-06 0.28491 0.00013839 485.72935007854625 85.509 0.20551 85.509 85.325 85.531 0 35 20 2 0 0 0 0.82752 1 20402 20402 88.954 31.483 1 262950 3083 3529 1935 1938 3800 3800 -0.04158200610413587 DEISFVNF 8 Unmodified _DEISFVNF_ 0 0 0 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 485.7294616699219 2 485.729458 969.444362 0.2824 0.00013717 -0.10035 -4.8743E-05 0.18205 8.8425E-05 485.72933815961505 85.662 0.20931 85.662 85.599 85.808 0 52 19 3 0 0 0 0.82752 2 20436 20436;20473 111.29 43.943 1 608620 3084 3529 1935 1938 3801;3802 3801 -0.04158200610413587 DEKAIMTY 8 Oxidation (M) _DEKAIM(Oxidation (M))TY_ DEKAIM(1)TY DEKAIM(46)TY 0 0 1 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;ENSG00000130402|ENST00000252699|ACTN4 nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS UPN46_class_I_Rep_3 1 493.72845458984375 2 493.7286 985.442648 0.11484 5.6698E-05 -0.26187 -0.00012929 -0.14704 -7.2596E-05 493.72839585125746 33.209 0.37799 33.209 33.067 33.445 0 41 29 2 0 0 0 0.82752 1 5773 5773 45.7 16.618 1 67696 3085 1096;2657 1936 1939 3803 3803 29 -0.05065577690675127 DEKALAQAL 9 Unmodified _DEKALAQAL_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 479.7635498046875 2 479.763832 957.513111 0.2213 0.00010617 -0.16561 -7.9454E-05 0.055691 2.6719E-05 479.7636590522423 48.159 0.69514 48.159 47.887 48.583 0 162 71 3 0 0 0 0.0073203 3 9996 9963;9996;10033 71.708 16.205 1 819500 3086 4705 1937 1940 3804;3805;3806 3805 0.032654636892857525 DEKDFYLY 8 Unmodified _DEKDFYLY_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 546.7471313476562 2 546.747847 1091.48114 0.31613 0.00017285 0.21627 0.00011824 0.5324 0.00029109 546.7479259256969 62.04 0.40418 62.04 61.813 62.217 0 54 37 2 0 0 0 0.82752 1 13829 13829 30.637 4.2953 1 164770 3087 1340 1938 1941 3807 3807 -0.06093948784518943 DEKKLCHK 8 Unmodified _DEKKLCHK_ 0 0 0 REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|8|1|sense REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 500.76580810546875 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 31.262 1 34.561 34.061 35.061 3.2991 0 0 0 0.40746 1 5304 5304 0.69038 0 1 + 3088 25769 1939 1942 3808 3808 0.017372299113503686 DEKLLQTM 8 Oxidation (M) _DEKLLQTM(Oxidation (M))_ DEKLLQTM(1) DEKLLQTM(59) 0 0 1 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|2|intron;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|1|intron;ENST00000550036.1_1_12:105556619-105558145:+|nuORF;ENSG00000136051|ENST00000332180|WASHC4 ENSG00000111913|ENST00000643898|RIPOR2;ENSG00000136051|ENST00000332180|WASHC4 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN46_class_I_Rep_3 1 497.2501525878906 2 497.2497 992.484847 0.19528 9.71E-05 0.09721 4.8338E-05 0.29248 0.00014544 497.2496888424224 36.733 0.86102 36.733 36.4 37.261 0 121 79 2 0 0 0 0.82752 5 6771 6771;6807;6848;6892;6898 96.367 27.262 1 307960 3089 1994;2946 1940 1943 3809;3810;3811;3812;3813 3809 64 -0.011696022823116436 DEKLLYDTF 9 Unmodified _DEKLLYDTF_ 0 0 0 ENST00000553618.1_1_14:67665960-67666731:+|nuORF;ENSG00000143368|ENST00000271628|SF3B4 ENST00000553618.1_1_14:67665960-67666731:+|nuORF ENST00000553618.1_1_14:67665960-67666731:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 572.2825317382812 2 572.282054 1142.54956 0.42963 0.00024587 -0.014701 -8.4131E-06 0.41493 0.00023745 572.2819272478995 68.304 0.59437 68.304 68.092 68.686 0 105 65 3 0 0 0 0.0073203 3 15581 15547;15581;15617 71.708 45.44 1 258710 3090 3292 1941 1944 3814;3815;3816 3815 -0.016017042046769348 DEKRQGHYI 9 Unmodified _DEKRQGHYI_ 0 0 0 L1P2_dup1239|chr12:27041224-27043552:+|2.2384998715057183|0.2307544213872207|3.28|151.0|37|2|sense;L1P2_dup602|chr6:35331965-35336436:+|5.3546221880863385|0.0280330045729563|7.58|151.0|70|2|sense L1P2_dup1239|chr12:27041224-27043552:+|2.2384998715057183|0.2307544213872207|3.28|151.0|37|2|sense L1P2_dup1239|chr12:27041224-27043552:+|2.2384998715057183|0.2307544213872207|3.28|151.0|37|2|sense MSMS UPN46_class_I_Rep_3 1 573.2899169921875 2 573.288537 1144.56252 NaN NaN NaN NaN NaN NaN NaN 68.863 1 68.863 68.363 69.363 0 0 0 0 0.38299 1 15748 15748 4.756 0.42677 1 3091 13481 1942 1945 3817 3817 -0.003978283019023365 DEKSIITY 8 Unmodified _DEKSIITY_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron nc|ENSG00000070182|P11277-3|SPTB;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MULTI-MSMS UPN46_class_I_Rep_3 1 484.7503662109375 2 484.75039 967.486227 0.23459 0.00011372 0.081322 3.9421E-05 0.31592 0.00015314 484.7504074287351 48.158 0.39633 48.158 47.971 48.367 0 67 40 2 0 0 0 0.82752 4 9974 9974;10001;10019;10056 31.268 2.7815 1 201350 3092 4818;1067;4653;3876 1943 1946 3818;3819;3820;3821 3818 0.0011835507808655166 DEKTAADY 8 Unmodified _DEKTAADY_ 0 0 0 ENST00000441775.1_1_1:84710041-84710257:+|nuORF;ENST00000560427.1_1_14:24686335-24687646:-|nuORF;ENST00000527046.5_1_14:24686335-24700866:-|nuORF;ENSG00000129559|ENST00000250495|NEDD8 ENST00000441775.1_1_1:84710041-84710257:+|nuORF ENST00000441775.1_1_1:84710041-84710257:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 456.7110290527344 2 456.700897 911.387241 -0.25139 -0.00011481 0.67618 0.00030881 0.42478 0.000194 456.7005494654445 21.152 0.36882 21.152 21.055 21.424 0 53 39 2 0 0 0 0.82752 1 2361 2361 9.3831 5.4387 1 46560 3093 2623 1944 1947 3822 3822 -0.07199667886811767 DEKTASELKIL 11 Unmodified _DEKTASELKIL_ 0 0 0 ENSG00000148835|ENST00000369839|TAF5;nc|ENSG00000148835|Q15542-2|TAF5 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 MSMS UPN47_class_I_Rep_3 4 416.2351989746094 3 416.234487 1245.68163 NaN NaN NaN NaN NaN NaN NaN 103.92 1 107.44 106.94 107.94 3.5205 0 0 0 0.37931 1 25490 25490 3.5927 0 1 3094 3521 1945 1948 3823 3823 0.06861900812282329 DEKVLIEAY 9 Unmodified _DEKVLIEAY_ 0 0 0 nc|ENSG00000024048|Q8IWV8-3|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8-3|UBR2 nc|ENSG00000024048|Q8IWV8-3|UBR2 MULTI-MSMS UPN46_class_I_Rep_3 1 540.2852783203125 2 540.284597 1078.55464 0.27811 0.00015026 0.61537 0.00033247 0.89347 0.00048273 540.2849713856776 57.308 0.39713 57.308 57.111 57.508 0 47 38 2 0 0 0 0.073198 1 12556 12556 40.239 2.2652 1 127720 3095 818 1946 1949 3824 3824 0.01850599657973362 DEKYKIAD 8 Unmodified _DEKYKIAD_ 0 0 0 nc|ENSG00000135828|Q05823-2|RNASEL;ENSG00000135828|ENST00000367559|RNASEL nc|ENSG00000135828|Q05823-2|RNASEL nc|ENSG00000135828|Q05823-2|RNASEL MULTI-MSMS UPN46_class_I_Rep_3 1 491.2478942871094 2 491.248015 980.481476 -0.063942 -3.1411E-05 -0.44205 -0.00021716 -0.50599 -0.00024857 491.24780782908834 25.465 0.49984 25.465 25.241 25.741 0 59 45 2 0 0 0 0.82752 1 3550 3550 2.0598 0 1 71021 3096 2932 1947 1950 3825 3825 -0.0095452906467699 DEKYWTRRKKN 11 Unmodified _DEKYWTRRKKN_ 0 0 0 nc|ENSG00000167074|Q10587-2|TEF;ENSG00000167074|ENST00000266304|TEF nc|ENSG00000167074|Q10587-2|TEF nc|ENSG00000167074|Q10587-2|TEF MSMS UPN46_class_I_Rep_3 1 508.7568054199219 3 508.60743 1522.80046 NaN NaN NaN NaN NaN NaN NaN 64.045 1 64.045 63.545 64.545 0 0 0 0 0.38417 1 14393 14393 0.40827 0.24894 1 3097 4287 1948 1951 3826 3826 0.05997112560498863 DELALMEKF 9 Oxidation (M) _DELALM(Oxidation (M))EKF_ DELALM(1)EKF DELALM(42)EKF 0 0 1 nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8 nc|ENSG00000145779|O95379-3|TNFAIP8 nc|ENSG00000145779|O95379-3|TNFAIP8 MULTI-MSMS UPN46_class_I_Rep_3 1 556.2713012695312 2 556.270632 1110.52671 0.34226 0.00019039 -0.02579 -1.4346E-05 0.31647 0.00017605 556.2706072935044 59.22 0.52129 59.22 58.891 59.413 0 81 59 2 0 0 0 0.065535 1 13015 13015 42.312 19.576 1 261700 3098 3411 1949 1952 3827 3827 110 -0.024130465938014822 DELAYVFN 8 Unmodified _DELAYVFN_ 0 0 0 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant;RYR1|p.V4024Gfs*7|1|0.07|ENSG00000196218|chr19:38546503-38546503|T/-|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 485.729248046875 2 485.729458 969.444362 0.28216 0.00013705 -0.16547 -8.0373E-05 0.11669 5.6679E-05 485.7292855673075 85.853 0.10756 85.853 85.8 85.907 0 14 10 2 0 0 0 0.82752 1 20518 20518 15.847 1.0089 1 156900 3099 5289 1950 1953 3828 3828 -0.04158200610424956 DELDLSVDEV 10 Unmodified _DELDLSVDEV_ 0 0 0 REV__ENSG00000130202|ENST00000252483|NECTIN2 REV__ENSG00000130202|ENST00000252483|NECTIN2 MULTI-SECPEP UPN47_class_I_Rep_3 4 566.7821655273438 2 567.264059 1132.51356 0.46628 0.00026451 -2.2627 -0.0012835 -1.7964 -0.001019 568.2682986268428 78.488 0.27814 81.77 81.681 81.959 3.2816 51 30 3 0 0 0 0.84575 1 19620 19620 5.7319 1.4026 1 47357 + 3100 18931 1951 1954 3829 3829 -0.0473920617218937 DELDSKLNY 9 Unmodified _DELDSKLNY_ 0 0 0 ENSG00000111348|ENST00000228945|ARHGDIB;ENST00000535676.1_1_12:15100779-15103646:-|nuORF ENSG00000111348|ENST00000228945|ARHGDIB ENSG00000111348|ENST00000228945|ARHGDIB MULTI-MSMS UPN46_class_I_Rep_3 1 548.7617797851562 2 548.761486 1095.50842 0.34871 0.00019136 0.063162 3.4661E-05 0.41187 0.00022602 548.7614799596353 48.32 0.54044 48.32 48.105 48.646 0 96 53 2 0 0 0 0.0070571 2 10039 10039;10086 86.332 40.311 1 592120 3101 1970 1952 1955 3830;3831 3830 -0.035514652441406724 DELEIKAYY 9 Unmodified _DELEIKAYY_ 0 0 0 ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11 ENST00000526904.5_1_1:1250884-1259984:-|nuORF ENST00000526904.5_1_1:1250884-1259984:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 572.2821044921875 2 572.282054 1142.54956 0.40915 0.00023415 -0.32122 -0.00018383 0.087932 5.0322E-05 572.2816711117785 61.416 0.61757 61.416 61.156 61.773 0 103 63 3 0 0 0 0.019142 2 13704 13669;13704 63.961 44.704 1 335410 3102 2560 1953 1956 3832;3833 3833 -0.016017042046769348 DELERLSGWE 10 Unmodified _DELERLSGWE_ 0 0 0 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 MULTI-MSMS UPN47_class_I_Rep_2 3 617.2911987304688 2 617.290942 1232.56733 0.49638 0.00030641 -0.082777 -5.1098E-05 0.4136 0.00025531 617.290642219344 59.952 0.87551 63.225 62.832 63.707 3.2731 106 54 3 0 0 0 0.505 1 13997 13997 11.495 2.7493 1 216620 3103 1891 1954 1957 3834 3834 -0.03964988949792314 DELERLSGWE 10 Unmodified _DELERLSGWE_ 0 0 0 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 617.290942 1232.56733 0.4553 0.00028105 -0.20012 -0.00012353 0.25519 0.00015752 617.2907915259465 59.721 0.7582 63.119 62.773 63.531 3.3982 -0.073202 -5.2412E-05 NaN 11.495 99 47 3 NaN NaN NaN NaN 0 NaN NaN 0 216170 3104 1891 1954 1957 -0.03964988949792314 DELERLSGWE 10 Unmodified _DELERLSGWE_ 0 0 0 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 617.290942 1232.56733 0.49638 0.00030641 -0.082777 -5.1098E-05 0.4136 0.00025531 617.290642219344 59.952 0.87551 63.225 62.832 63.707 3.2731 0.032636 9.2454E-05 NaN 11.495 106 54 3 NaN NaN NaN NaN 0 NaN NaN 0 216620 3105 1891 1954 1957 -0.03964988949792314 DELEVIHL 8 Unmodified _DELEVIHL_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS UPN46_class_I_Rep_3 1 484.2581787109375 2 484.258382 966.502212 0.23162 0.00011216 -0.066989 -3.244E-05 0.16463 7.9723E-05 484.2581767932269 70.276 0.28729 70.276 70.086 70.373 0 42 32 2 0 0 0 0.82752 1 16147 16147 42.095 6.0504 1 257990 3106 2199 1955 1958 3835 3835 0.017620613150143072 DELFKWSSS 9 Unmodified _DELFKWSSS_ 0 0 0 REV__LTR13A_dup123|chr15:78902313-78903239:-|1.9922175766127288|0.1737464571396746|3.52|151.0|25|3|sense REV__LTR13A_dup123|chr15:78902313-78903239:-|1.9922175766127288|0.1737464571396746|3.52|151.0|25|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 549.75927734375 2 549.758746 1097.50294 0.39172 0.00021535 0.42813 0.00023537 0.81985 0.00045072 549.7593978605129 83.478 0.24204 83.478 83.326 83.568 0 41 26 2 0 0 0 0.49026 1 19824 19824 1.6526 0.85899 1 106970 + 3107 30841 1956 1959 3836 3836 -0.04191144035939942 DELHPDLKF 9 Unmodified _DELHPDLKF_ 0 0 0 ENSG00000137168|ENST00000373699|PPIL1 ENSG00000137168|ENST00000373699|PPIL1 ENSG00000137168|ENST00000373699|PPIL1 MULTI-MSMS UPN48_class_I_Rep_2 6 557.2832641601562 2 557.282389 1112.55022 0.43176 0.00024061 0.044082 2.4566E-05 0.47584 0.00026518 557.2823008556405 42.261 0.63141 46.019 45.741 46.373 3.7579 121 60 3 0 0 0 0.42249 1 7818 7818 6.7232 1.9672 1 182650 3108 3011 1957 1960 3837 3837 -0.001548647649542545 DELHPDLKF 9 Unmodified _DELHPDLKF_ 0 0 0 ENSG00000137168|ENST00000373699|PPIL1 ENSG00000137168|ENST00000373699|PPIL1 ENSG00000137168|ENST00000373699|PPIL1 MULTI-MSMS UPN48_class_I_Rep_2 6 557.2826538085938 2 557.282389 1112.55022 0.40191 0.00022398 0.19027 0.00010604 0.59218 0.00033001 557.2823929059605 46.894 0.59261 50.644 50.385 50.978 3.7494 88 45 3 0 0 0 0.41259 1 9195 9195 7.2892 0.56607 1 258630 3109 3011 1957 1960 3838 3838 -0.001548647649542545 DELIVQHY 8 Unmodified _DELIVQHY_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN46_class_I_Rep_3 1 508.75567626953125 2 508.756007 1015.49746 0.26782 0.00013625 -0.045777 -2.3289E-05 0.22204 0.00011297 508.75587930880675 49.124 0.55212 49.124 48.816 49.369 0 128 51 3 0 0 0 0.82752 3 10247 10247;10281;10315 96.285 56.327 1 824820 3110 2717 1958 1961 3839;3840;3841 3839 -0.009668228277632807 DELIVQHY 8 Unmodified _DELIVQHY_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN46_class_I_Rep_3 1 508.7560119628906 2 508.756007 1015.49746 0.26626 0.00013546 0.64001 0.00032561 0.90627 0.00046107 508.75631889395595 49.448 0.17485 49.448 49.358 49.533 0 32 19 3 0 0 0 0.82752 1 10368 10368 37.974 16.227 1 236380 3111 2717 1958 1961 3842 3842 -0.009668228277632807 DELIVQHY 8 Unmodified _DELIVQHY_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN46_class_I_Rep_3 1 508.75665283203125 2 508.756007 1015.49746 0.26533 0.00013499 1.3211 0.0006721 1.5864 0.00080709 508.7564790980067 49.593 0.24206 49.593 49.455 49.697 0 40 28 2 0 0 0 0.82752 1 10430 10430 20.454 3.5113 1 195770 3112 2717 1958 1961 3843 3843 -0.009668228277632807 DELLHLLKL 9 Unmodified _DELLHLLKL_ 0 0 0 nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK nc|ENSG00000123572|Q7Z2Y5-2|NRK nc|ENSG00000123572|Q7Z2Y5-2|NRK MSMS UPN47_class_I_Rep_1 2 547.3323974609375 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 94.301 1 98.052 97.552 98.552 3.7508 0 0 0 0.4007 1 23435 23435 0.52476 0 1 3113 2428 1959 1962 3844 3844 0.11167462062576305 DELLRRYTA 9 Unmodified _DELLRRYTA_ 0 0 0 REV__CON__P05784 REV__CON__P05784 MULTI-MSMS UPN46_class_I_Rep_3 1 568.8302612304688 2 568.806562 1135.59857 0.39185 0.00022288 2.1078 0.001199 2.4997 0.0014218 569.3087082252747 54.583 0.034363 54.583 54.559 54.593 0 5 3 2 0 0 0 0.41259 1 11826 11826 7.2892 0 1 128610 + + 3114 17477 1960 1963 3845 3845 0.03619628874935188 DELMSYSTLG 10 Unmodified _DELMSYSTLG_ 0 0 0 REV__L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|46|3|anti-sense REV__L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|46|3|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2509155273438 2 558.249897 1114.48524 NaN NaN NaN NaN NaN NaN NaN 30.65 1 34.132 33.632 34.632 3.4821 0 0 0 0.53105 1 5082 5082 1.4819 0.15237 1 + 3115 26280 1961 1964 3846 3846 -0.067422273531065 DELNHASL 8 Unmodified _DELNHASL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS UPN46_class_I_Rep_3 1 449.7166442871094 2 449.716882 897.41921 0.076168 3.4254E-05 -0.15924 -7.1612E-05 -0.08307 -3.7358E-05 449.7168170468158 36.854 0.53747 36.854 36.671 37.209 0 63 51 2 0 0 0 0.82752 2 6941 6878;6941 31.268 0 1 172870 3116 1520 1962 1965 3847;3848 3848 -0.033602554129970486 DELQFLEKI 9 Unmodified _DELQFLEKI_ 0 0 0 ENSG00000100220|ENST00000216038|RTCB;ENST00000463455.1_1_22:32804140-32808230:-|nuORF;ENST00000487704.5_1_22:32797732-32808215:-|nuORF ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB MSMS UPN46_class_I_Rep_3 1 567.8056030273438 2 567.805697 1133.59684 NaN NaN NaN NaN NaN NaN NaN 79.429 1 79.429 78.929 79.929 0 0 0 0 0.18341 1 18658 18658 17.443 3.0373 1 3117 1482 1963 1966 3849 3849 0.035385750663408544 DELQQPLEL 9 Unmodified _DELQQPLEL_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS UPN46_class_I_Rep_3 1 542.779541015625 2 542.779679 1083.5448 0.33301 0.00018075 -0.050621 -2.7476E-05 0.28239 0.00015327 542.7795486973213 72.594 0.52005 72.594 72.316 72.836 0 85 54 2 0 0 0 0.36258 1 16740 16740 10.151 3.0488 1 213460 3118 4478 1964 1967 3850 3850 0.0063741165256487875 DELRAVMF 8 Oxidation (M) _DELRAVM(Oxidation (M))F_ DELRAVM(1)F DELRAVM(65)F 0 0 1 nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3 nc|ENSG00000129680|Q8IWC1-3|MAP7D3 nc|ENSG00000129680|Q8IWC1-3|MAP7D3 MSMS UPN46_class_I_Rep_3 1 498.74468994140625 2 498.744585 995.474617 NaN NaN NaN NaN NaN NaN NaN 56.692 1 56.692 56.192 57.192 0 0 0 0 9.0739E-05 1 12380 12380 65.235 36.748 1 3119 2629 1965 1968 3851 3851 88 -0.02330165216869773 DELRKKGF 8 Unmodified _DELRKKGF_ 0 0 0 L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|13|1|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|86|2|sense L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|13|1|sense L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 496.7776794433594 2 496.779816 991.545079 NaN NaN NaN NaN NaN NaN NaN 73.353 1 73.353 72.853 73.853 0 0 0 0 0.39408 1 17000 17000 10.183 0.83596 1 3120 14347 1966 1969 3852 3852 0.0489687616310448 DELYFAKI 8 Unmodified _DELYFAKI_ 0 0 0 ENST00000313543.4_1_7:150217976-150218036:+|nuORF ENST00000313543.4_1_7:150217976-150218036:+|nuORF ENST00000313543.4_1_7:150217976-150218036:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 499.7632141113281 2 499.7633 997.512048 0.27734 0.0001386 0.076203 3.8084E-05 0.35354 0.00017669 499.76320097559767 74.876 0.32562 74.876 74.591 74.917 0 103 38 4 0 0 0 0.82752 1 17323 17323 12.532 0 1 848050 3121 6118 1967 1970 3853 3853 0.013192493203860067 DEMAAVMGF 9 2 Oxidation (M) _DEM(Oxidation (M))AAVM(Oxidation (M))GF_ DEM(1)AAVM(1)GF DEM(67)AAVM(67)GF 0 0 2 ENST00000506644.3_1_5:140083564-140085338:+|nuORF;ENSG00000146007|ENST00000274712|ZMAT2 ENST00000506644.3_1_5:140083564-140085338:+|nuORF ENST00000506644.3_1_5:140083564-140085338:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 501.69879150390625 2 501.698986 1001.38342 0.24663 0.00012373 -0.12389 -6.2155E-05 0.12274 6.1579E-05 501.69871215666785 52.066 0.6876 52.066 51.806 52.493 0 144 80 2 0 0 0 0.013968 2 11083 11083;11123 67.344 44.195 1 514470 3122 3421 1968 1971 3854;3855 3854 111;112 -0.11721796976519272 DEMDYGTY 8 Unmodified _DEMDYGTY_ 0 0 0 REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B REV__nc|ENSG00000125630|Q9H9Y6-4|POLR1B MSMS UPN46_class_I_Rep_3 1 497.1781005859375 2 497.17894 992.343328 NaN NaN NaN NaN NaN NaN NaN 58.554 1 58.554 58.054 59.054 0 0 0 0 0.40364 1 12894 12894 5.7604 0 1 + 3123 18834 1969 1972 3856 3856 -0.15315020375442145 DEMHTETDL 9 Unmodified _DEMHTETDL_ 0 0 0 REV__MLT1C_dup16987|chr17:47150255-47150685:+|1.2748278234702763|0.0497272415268081|4.68|150.0|12|2|sense REV__MLT1C_dup16987|chr17:47150255-47150685:+|1.2748278234702763|0.0497272415268081|4.68|150.0|12|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 546.3099365234375 2 545.721504 1089.42845 0.48578 0.0002651 0.66094 0.00036069 1.1467 0.00062579 545.7217550088014 52.854 0.76694 56.048 55.835 56.602 3.1948 71 49 2 0 0 0 0.12235 1 12039 12039 4.756 0 1 182040 + 3124 31640 1970 1973 3857 3857 -0.11268274909616594 DEMLSRGF 8 Oxidation (M) _DEM(Oxidation (M))LSRGF_ DEM(1)LSRGF DEM(66)LSRGF 0 0 1 ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS UPN46_class_I_Rep_3 1 485.7184753417969 2 485.718567 969.422581 0.24571 0.00011934 0.070006 3.4003E-05 0.31571 0.00015335 485.7185316761565 40.178 1.128 40.178 39.679 40.807 0 273 127 3 0 0 0 0.82752 6 7680 7680;7716;7762;7790;7821;7879 99.755 49.822 1 1121500 3125 3911;7543;3747 1971 1974 3858;3859;3860;3861;3862;3863 3858 121 -0.06335328630632375 DEMNVKVL 8 Oxidation (M) _DEM(Oxidation (M))NVKVL_ DEM(1)NVKVL DEM(89)NVKVL 0 0 1 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN46_class_I_Rep_3 1 482.2444763183594 2 482.244418 962.474282 0.21624 0.00010428 0.1579 7.6148E-05 0.37415 0.00018043 482.24429998142944 39.235 0.95224 39.235 38.878 39.831 0 249 99 3 0 0 0 0.82752 4 7483 7483;7511;7543;7576 108 38.118 1 1483000 3126 16644 1972 1975 3864;3865;3866;3867 3864 180 -0.00845584936735122 DEMVSLKDY 9 Oxidation (M) _DEM(Oxidation (M))VSLKDY_ DEM(1)VSLKDY DEM(41)VSLKDY 0 0 1 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN46_class_I_Rep_3 1 558.2509155273438 2 558.249897 1114.48524 0.40052 0.00022359 0.39806 0.00022221 0.79858 0.00044581 558.2500870376049 45.025 0.43052 45.025 44.853 45.284 0 57 43 2 0 0 0 0.071184 2 9138 9138;9149 40.725 26.819 1 184890 3127 1207 1973 1976 3868;3869 3868 36 -0.067422273531065 DEMWLQVQ 8 Unmodified _DEMWLQVQ_ 0 0 0 REV__ENST00000378339.6_1_5:137781719-137782058:+|nuORF REV__ENST00000378339.6_1_5:137781719-137782058:+|nuORF MSMS UPN47_class_I_Rep_2 3 524.7440185546875 2 524.742042 1047.46953 NaN NaN NaN NaN NaN NaN NaN 16.371 1 19.758 19.258 20.258 3.3864 0 0 0 0.40501 1 1034 1034 3.9444 0.66309 1 + 3128 22029 1974 1977 3870 3870 -0.052304690795153874 DENEHQLSL 9 Unmodified _DENEHQLSL_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 542.7491455078125 2 542.74891 1083.48327 0.35565 0.00019303 0.39996 0.00021708 0.75562 0.00041011 542.749121960255 42.442 0.46852 42.442 42.353 42.821 0 70 47 2 0 0 0 0.17897 2 8434 8389;8434 22.736 2.9014 1 558460 3129 4909 1975 1978 3871;3872 3872 -0.055135200467020695 DENEIEKL 8 Unmodified _DENEIEKL_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS UPN46_class_I_Rep_3 1 495.2430114746094 2 495.242929 988.471305 0.28814 0.0001427 0.0097837 4.8453E-06 0.29792 0.00014754 495.242905398702 42.865 0.70583 42.865 42.533 43.239 0 101 64 2 0 0 0 0.82752 2 8456 8456;8507 59.368 17.413 1 281840 3130 1101 1976 1979 3873;3874 3873 -0.023391367898966564 DENELKEFF 9 Unmodified _DENELKEFF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN46_class_I_Rep_3 1 585.7698974609375 2 585.769311 1169.52407 0.48646 0.00028495 0.103 6.0333E-05 0.58945 0.00034528 585.7692679902822 70.94 0.69257 70.94 70.634 71.327 0 105 75 2 0 0 0 0.056914 1 16327 16327 46.022 23.286 1 598530 3131 3109 1977 1980 3875 3875 -0.05391178727086299 DENELKEFF 9 Unmodified _DENELKEFF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN46_class_I_Rep_3 1 585.7684326171875 2 585.769311 1169.52407 NaN NaN NaN NaN NaN NaN NaN 71.056 1 71.056 70.556 71.556 0 0 0 0 0.054165 1 16355 16355 35.612 18.499 1 3132 3109 1977 1980 3876 3876 -0.05391178727086299 DENELKEFF 9 Unmodified _DENELKEFF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN46_class_I_Rep_3 1 585.7692260742188 2 585.769311 1169.52407 NaN NaN NaN NaN NaN NaN NaN 71.188 1 71.188 70.688 71.688 0 0 0 0 0.098956 1 16388 16388 24.882 15.498 1 3133 3109 1977 1980 3877 3877 -0.05391178727086299 DENELKEFF 9 Unmodified _DENELKEFF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN46_class_I_Rep_3 1 585.7694702148438 2 585.769311 1169.52407 NaN NaN NaN NaN NaN NaN NaN 71.328 1 71.328 70.828 71.828 0 0 0 0 0.13348 1 16426 16426 20.581 11.198 1 3134 3109 1977 1980 3878 3878 -0.05391178727086299 DENELKEFF 9 Unmodified _DENELKEFF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN46_class_I_Rep_3 1 585.7692260742188 2 585.769311 1169.52407 NaN NaN NaN NaN NaN NaN NaN 72.266 1 72.266 71.766 72.766 0 0 0 0 0.36857 1 16696 16696 7.1017 1.3699 1 3135 3109 1977 1980 3879 3879 -0.05391178727086299 DENELKEFF 9 Unmodified _DENELKEFF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN47_class_I_Rep_1 2 585.7684326171875 2 585.769311 1169.52407 0.34681 0.00020315 -0.59834 -0.00035049 -0.25153 -0.00014734 585.7688900857781 66.113 0.52571 69.47 69.278 69.804 3.3576 51 35 2 0 0 0 0.30497 2 15814 15814;15864 13.615 6.5131 1 69980 3136 3109 1977 1980 3880;3881 3880 -0.05391178727086299 DENFILKH 8 Unmodified _DENFILKH_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENSG00000196262|ENST00000468812|PPIA ENSG00000114857|ENST00000232978|NKTR;ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MULTI-MSMS UPN46_class_I_Rep_3 1 508.26422119140625 2 508.263999 1014.51345 0.29726 0.00015109 -0.041882 -2.1287E-05 0.25538 0.0001298 508.26388436327636 40.874 0.82942 40.874 40.592 41.422 0 184 86 3 0 0 0 0.82752 5 7915 7915;7951;7994;8028;8053 92.491 44.146 1 666580 3137 2094;5293 1978 1981 3882;3883;3884;3885;3886 3882 0.006768834091417375 DENFPLQL 8 Unmodified _DENFPLQL_ 0 0 0 L1MDa_dup5785|chr15:56992920-56995002:+|1.9058879175489685|0.0301021900346523|5.98|151.0|6|1|sense L1MDa_dup5785|chr15:56992920-56995002:+|1.9058879175489685|0.0301021900346523|5.98|151.0|6|1|sense L1MDa_dup5785|chr15:56992920-56995002:+|1.9058879175489685|0.0301021900346523|5.98|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 488.2428894042969 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 64.989 1 68.345 67.845 68.845 3.3557 0 0 0 0.40625 1 15471 15471 2.3027 1.5091 1 3138 12139 1979 1982 3887 3887 -0.01734511719087095 DENFVAYRKK 10 Unmodified _DENFVAYRKK_ 0 0 0 REV__ENSG00000177084|ENST00000320574|POLE REV__ENSG00000177084|ENST00000320574|POLE MSMS UPN48_class_I_Rep_3 7 635.3336181640625 2 635.332944 1268.65134 NaN NaN NaN NaN NaN NaN NaN 86.228 1 89.998 89.498 90.498 3.7701 0 0 0 0.53105 1 20471 20471 1.4819 0 1 + 3139 20610 1980 1983 3888 3888 0.02775586937718799 DENGKIVGY 9 Unmodified _DENGKIVGY_ 0 0 0 ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10 ENST00000478177.1_1_X:153199394-153200402:-|nuORF ENST00000478177.1_1_X:153199394-153200402:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.7455139160156 2 497.745639 993.476725 NaN NaN NaN NaN NaN NaN NaN 37.552 1 37.552 37.052 38.052 0 0 0 0 0.026253 1 7071 7071 49.933 6.0747 1 3140 1599 1981 1984 3889 3889 -0.02027413207429163 DENGKIVGY 9 Unmodified _DENGKIVGY_ 0 0 0 ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10 ENST00000478177.1_1_X:153199394-153200402:-|nuORF ENST00000478177.1_1_X:153199394-153200402:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.74517822265625 2 497.745639 993.476725 NaN NaN NaN NaN NaN NaN NaN 37.588 1 37.588 37.088 38.088 0 0 0 0 0.036836 1 7082 7082 41.84 5.7126 1 3141 1599 1981 1984 3890 3890 -0.02027413207429163 DENIKEKHK 9 Unmodified _DENIKEKHK_ 0 0 0 REV__nc|ENSG00000113522|Q92878-3|RAD50 REV__nc|ENSG00000113522|Q92878-3|RAD50 MSMS UPN48_class_I_Rep_2 6 570.8057250976562 2 570.80402 1139.59349 NaN NaN NaN NaN NaN NaN NaN 55.883 1 59.439 58.939 59.939 3.5559 0 0 0 0.39036 1 11951 11951 2.9952 0.69251 1 + 3142 18510 1982 1985 3891 3891 0.029273250123196703 DENIQQKL 8 Unmodified _DENIQQKL_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MSMS UPN46_class_I_Rep_3 1 494.2593078613281 2 494.258914 986.503274 NaN NaN NaN NaN NaN NaN NaN 35.922 1 35.922 35.422 36.422 0 0 0 0 0.39615 1 6598 6598 9.3831 3.1773 1 3143 3095 1983 1986 3892 3892 0.009482756839133799 DENKKPVY 8 Unmodified _DENKKPVY_ 0 0 0 VPS13A|p.G2989Rfs*8|1|0.07|ENSG00000197969|chr9:77371031-77371032|-/A|frameshift_variant;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A VPS13A|p.G2989Rfs*8|1|0.07|ENSG00000197969|chr9:77371031-77371032|-/A|frameshift_variant VPS13A|p.G2989Rfs*8|1|0.07|ENSG00000197969|chr9:77371031-77371032|-/A|frameshift_variant MSMS UPN48_class_I_Rep_2 6 496.75592041015625 2 496.756007 991.497461 NaN NaN NaN NaN NaN NaN NaN 36.149 1 39.836 39.336 40.336 3.6877 0 0 0 0.4044 1 6045 6045 4.756 0.42677 1 3144 5398 1984 1987 3893 3893 0.0013717717223471482 DENLIYWPR 9 Unmodified _DENLIYWPR_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16;ENST00000520763.5_1_8:33342724-33346658:+|nuORF ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MULTI-MSMS UPN47_class_I_Rep_1 2 603.301513671875 2 603.301113 1204.58767 -0.057614 -3.4759E-05 -0.20822 -0.00012562 -0.26583 -0.00016038 603.3009486168731 25.657 0.59046 29.419 29.132 29.723 3.7624 97 54 3 0 0 0 0.49187 1 3505 3505 1.4819 0.15237 1 133250 3145 5404 1985 1988 3894 3894 -0.006437734993824051 DENPGVRY 8 Unmodified _DENPGVRY_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS UPN46_class_I_Rep_3 1 475.222412109375 2 475.222331 948.430109 0.044899 2.1337E-05 -0.11212 -5.328E-05 -0.067217 -3.1943E-05 475.2222127422465 32.342 0.70387 32.342 32.033 32.737 0 118 51 3 0 0 0 0.82752 4 5473 5473;5507;5544;5583 58.679 30.192 1 359530 3146 2176 1986 1989 3895;3896;3897;3898 3895 -0.046168530387149076 DENPQQLKL 9 Unmodified _DENPQQLKL_ 0 0 0 ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B ENST00000559358.1_1_17:62006588-62007812:-|nuORF ENST00000559358.1_1_17:62006588-62007812:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.7854614257812 2 542.785296 1083.55604 NaN NaN NaN NaN NaN NaN NaN 46.143 1 46.143 45.643 46.643 0 0 0 0 0.2408 1 9438 9438 13.906 5.3128 1 3147 731 1987 1990 3899 3899 0.017602337466996687 DENPQQLKL 9 Unmodified _DENPQQLKL_ 0 0 0 ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B ENST00000559358.1_1_17:62006588-62007812:-|nuORF ENST00000559358.1_1_17:62006588-62007812:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.7855834960938 2 542.785296 1083.55604 NaN NaN NaN NaN NaN NaN NaN 46.182 1 46.182 45.682 46.682 0 0 0 0 0.070158 1 9449 9449 31.268 17.362 1 3148 731 1987 1990 3900 3900 0.017602337466996687 DENPQQLKL 9 Unmodified _DENPQQLKL_ 0 0 0 ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B ENST00000559358.1_1_17:62006588-62007812:-|nuORF ENST00000559358.1_1_17:62006588-62007812:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.7847900390625 2 542.785296 1083.55604 NaN NaN NaN NaN NaN NaN NaN 46.405 1 46.405 45.905 46.905 0 0 0 0 0.056669 1 9512 9512 34.932 16.786 1 3149 731 1987 1990 3901 3901 0.017602337466996687 DENPQQLKL 9 Unmodified _DENPQQLKL_ 0 0 0 ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B ENST00000559358.1_1_17:62006588-62007812:-|nuORF ENST00000559358.1_1_17:62006588-62007812:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.785888671875 2 542.785296 1083.55604 NaN NaN NaN NaN NaN NaN NaN 46.42 1 46.42 45.92 46.92 0 0 0 0 0.11827 1 9517 9517 21.537 4.5947 1 3150 731 1987 1990 3902 3902 0.017602337466996687 DENPQQLKL 9 Unmodified _DENPQQLKL_ 0 0 0 ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B ENST00000559358.1_1_17:62006588-62007812:-|nuORF ENST00000559358.1_1_17:62006588-62007812:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 542.7847290039062 2 542.785296 1083.55604 0.050584 2.7456E-05 -1.6719 -0.00090747 -1.6213 -0.00088002 542.7851542520019 42.103 0.39846 45.782 45.63 46.028 3.6792 51 26 3 0 0 0 0.35081 1 8510 8510 10.824 6.4947 1 62345 3151 731 1987 1990 3903 3903 0.017602337466996687 DENPQQLKL 9 Unmodified _DENPQQLKL_ 0 0 0 ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B ENST00000559358.1_1_17:62006588-62007812:-|nuORF ENST00000559358.1_1_17:62006588-62007812:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 542.7849731445312 2 542.785296 1083.55604 0.050066 2.7175E-05 -0.22149 -0.00012022 -0.17142 -9.3045E-05 542.7852598890888 42.397 0.42174 45.758 45.572 45.994 3.3611 40 30 2 0 0 0 0.36392 1 8654 8654 10.074 2.1638 1 54144 3152 731 1987 1990 3904 3904 0.017602337466996687 DENRVPDL 8 Unmodified _DENRVPDL_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-SECPEP UPN46_class_I_Rep_3 1 478.6780090332031 2 479.235439 956.456324 0.24582 0.0001178 -0.007383 -3.5382E-06 0.23843 0.00011427 479.2354042212518 42.951 0.41273 42.951 42.799 43.211 0 59 40 2 0 0 0 0.72333 1 8518 8518 3.9444 3.9444 1 177090 3153 3155 1988 1991 3905 3905 -0.023645838672450736 DENSAFLQF 9 Unmodified _DENSAFLQF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS UPN46_class_I_Rep_3 1 535.7449340820312 2 535.743096 1069.47164 0.33232 0.00017804 0.26054 0.00013958 0.59286 0.00031762 535.7432692494751 80.877 0.78584 80.877 80.597 81.383 0 120 82 2 0 0 0 0.0060693 4 19103 19065;19103;19109;19163 99.755 38.398 1 501730 3154 5383 1989 1992 3906;3907;3908;3909 3907 -0.06031717070072773 DENTGKVKYMA 11 Unmodified _DENTGKVKYMA_ 0 0 0 REV__ENST00000510271.1_1_5:83344085-83362419:-|nuORF REV__ENST00000510271.1_1_5:83344085-83362419:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 628.8038330078125 2 628.302995 1254.59144 0.46298 0.00029089 0.39009 0.00024509 0.85306 0.00053598 628.3032599077679 60.786 0.57771 64.168 63.864 64.442 3.3815 97 54 2 0 0 0 0.66059 1 14275 14275 2.2828 0.22302 1 182790 + 3155 20039 1990 1993 3910 3910 -0.02567471787779141 DEPAAPLREEA 11 Unmodified _DEPAAPLREEA_ 0 0 0 REV__nc|ENSG00000141314|P58872-3|RHBDL3 REV__nc|ENSG00000141314|P58872-3|RHBDL3 MSMS UPN47_class_I_Rep_3 4 599.2892456054688 2 599.290942 1196.56733 NaN NaN NaN NaN NaN NaN NaN 50.018 1 53.244 52.744 53.744 3.2262 0 0 0 0.38417 1 11013 11013 1.1933 0.59184 1 + 3156 19371 1991 1994 3911 3911 -0.023089889497896365 DEPLIHVF 8 Unmodified _DEPLIHVF_ 0 0 0 ENSG00000157778|ENST00000288607|PSMG3 ENSG00000157778|ENST00000288607|PSMG3 ENSG00000157778|ENST00000288607|PSMG3 MULTI-MSMS UPN46_class_I_Rep_3 1 485.25555419921875 2 485.255643 968.496732 0.2412 0.00011704 -0.1045 -5.071E-05 0.1367 6.6332E-05 485.2555064971317 72.415 0.62306 72.415 72.157 72.78 0 130 65 3 0 0 0 0.82752 2 16692 16692;16724 78.445 52.103 1 448330 3157 3777 1992 1995 3912;3913 3912 0.011223825231923001 DEPRRRSMLL 10 Unmodified _DEPRRRSMLL_ 0 0 0 REV__ENST00000528804.1_1_14:24682495-24682786:-|nuORF REV__ENST00000528804.1_1_14:24682495-24682786:-|nuORF MSMS UPN48_class_I_Rep_2 6 636.845947265625 2 636.845696 1271.67684 NaN NaN NaN NaN NaN NaN NaN 13.826 1 17.48 16.98 17.98 3.6542 0 0 0 0.53105 1 329 329 0.35063 0 1 + 3158 22832 1993 1996 3914 3914 0.05186738188558593 DEQLKYFRERR 11 Unmodified _DEQLKYFRERR_ 0 0 0 REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 513.9386596679688 3 513.939068 1538.79537 0.27704 0.00014238 -0.59304 -0.00030479 -0.31601 -0.00016241 513.9388255854466 37.673 0.80774 41.178 40.876 41.683 3.5052 185 82 3 0 0 0 0.68132 1 6385 6385 0.40827 0.40827 1 267720 + 3159 20918 1994 1997 3915 3915 0.047528086978672945 DEQLKYFRERR 11 Unmodified _DEQLKYFRERR_ 0 0 0 REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 513.939068 1538.79537 0.23137 0.00011891 -0.47235 -0.00024276 -0.24099 -0.00012385 513.9388261597808 37.422 0.63173 41.085 40.763 41.395 3.663 -0.0057521 0.00010646 NaN 0.40827 152 65 3 NaN NaN NaN NaN 0 NaN NaN 0 200810 + 3160 20918 1994 1997 0.047528086978672945 DEQLMHQI 8 Oxidation (M) _DEQLM(Oxidation (M))HQI_ DEQLM(1)HQI DEQLM(46)HQI 0 0 1 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MSMS UPN46_class_I_Rep_3 1 515.2374267578125 2 515.237124 1028.45969 0.17783 9.1626E-05 -0.022437 -1.156E-05 0.1554 8.0066E-05 515.2370888839819 35.194 0.64777 35.194 34.916 35.564 0 67 44 2 0 0 0 0.82752 1 6399 6399 45.7 24.163 1 166080 3161 5422 1995 1998 3916 3916 162 -0.05339657084891769 DEQNGKGNRY 10 Unmodified _DEQNGKGNRY_ 0 0 0 REV__LTR16C_dup2896|chr9:2038334-2038802:+|1.1348402076242536|0.0891278566923048|3.67|150.0|33|2|anti-sense REV__LTR16C_dup2896|chr9:2038334-2038802:+|1.1348402076242536|0.0891278566923048|3.67|150.0|33|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 590.7694091796875 2 590.770708 1179.52686 -0.016968 -1.0024E-05 0.2251 0.00013299 0.20814 0.00012296 590.7707921844044 16.162 0.85823 16.162 15.836 16.694 0 179 100 3 0 0 0 0.54822 2 984 984;1184 5.7319 1.4026 1 106860 + 3162 30855 1996 1999 3917;3918 3917 -0.05571910549565473 DEQSKRHFY 9 Unmodified _DEQSKRHFY_ 0 0 0 REV__ENSG00000143476|ENST00000366991|DTL REV__ENSG00000143476|ENST00000366991|DTL MULTI-MSMS UPN47_class_I_Rep_2 3 605.7883911132812 2 605.285994 1208.55744 0.48309 0.00029241 -0.52681 -0.00031887 -0.043712 -2.6458E-05 605.2858869422231 51.043 0.87966 54.381 54.016 54.896 3.3386 88 46 3 0 0 0 0.46434 1 11325 11325 4.3292 1.334 1 144820 + 3163 19450 1997 2000 3919 3919 -0.03850132164529896 DERAIEAL 8 Unmodified _DERAIEAL_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MULTI-MSMS UPN46_class_I_Rep_3 1 458.7404479980469 2 458.740357 915.46616 0.17722 8.1297E-05 0.066856 3.0669E-05 0.24407 0.00011197 458.74037066547817 45.556 0.56451 45.556 45.243 45.808 0 85 55 2 0 0 0 0.82752 1 9244 9244 36.127 10.728 1 325880 3164 2897 1998 2001 3920 3920 0.005046041381433497 DERFGKLTI 9 Unmodified _DERFGKLTI_ 0 0 0 REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.7982788085938 2 539.798206 1077.58186 0.4176 0.00022542 0.41967 0.00022654 0.83728 0.00045196 539.7980746627876 58.882 0.88372 62.299 61.93 62.814 3.4171 107 60 3 0 0 0 0.1249 1 13584 13584 29.082 2.1979 1 377690 + 3165 22448 1999 2002 3921 3921 0.0461712798901317 DERFGKLTI 9 Unmodified _DERFGKLTI_ 0 0 0 REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF REV__ENST00000463545.1_1_3:154070629-154071064:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 539.798095703125 2 539.798206 1077.58186 0.468 0.00025263 0.46388 0.0002504 0.93188 0.00050303 539.7980375477222 59.239 0.82489 62.513 62.058 62.883 3.2742 100 55 4 0 0 0 0.1249 1 13707 13707 29.082 1.4528 1 288650 + 3166 22448 1999 2002 3922 3922 0.0461712798901317 DERRNAEQY 9 Unmodified _DERRNAEQY_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN46_class_I_Rep_3 1 590.7706909179688 2 590.770708 1179.52686 -0.016968 -1.0024E-05 0.2251 0.00013299 0.20814 0.00012296 590.7707921844044 16.162 0.85823 16.162 15.836 16.694 0 179 100 3 0 0 0 0.36392 2 1084 1051;1084 10.074 4.4861 1 106860 3167 1497 2000 2003 3923;3924 3924 -0.055719105495882104 DERVFVALY 9 Unmodified _DERVFVALY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS UPN46_class_I_Rep_3 1 556.2913208007812 2 556.292756 1110.57096 0.37827 0.00021043 -0.081881 -4.555E-05 0.29639 0.00016488 556.2926758298419 71.011 0.45898 71.011 70.837 71.296 0 64 51 2 0 0 0 0.1249 2 16356 16352;16356 29.082 9.8246 1 135650 3168 4014 2001 2004 3925;3926 3926 0.02009725614720992 DERVGYVFI 9 Unmodified _DERVGYVFI_ 0 0 0 REV__L1MB1_dup2670|chr7:156880953-156882160:+|1.6613491765845303|0.0207710173777193|6.32|150.0|77|3|anti-sense REV__L1MB1_dup2670|chr7:156880953-156882160:+|1.6613491765845303|0.0207710173777193|6.32|150.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.2848510742188 2 549.284931 1096.55531 0.27016 0.0001484 -0.62211 -0.00034171 -0.35194 -0.00019332 549.2847684028332 46.753 0.85874 50.105 49.755 50.614 3.3515 135 61 3 0 0 0 0.37599 1 10046 10046 9.3831 9.3831 1 221710 + 3169 25657 2002 2005 3927 3927 0.010894390976773138 DERVLVAF 8 Unmodified _DERVLVAF_ 0 0 0 ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4 ENST00000531290.5_1_11:118889505-118889751:+|nuORF ENST00000531290.5_1_11:118889505-118889751:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 474.76080322265625 2 474.761092 947.507631 0.18988 9.0149E-05 -0.073496 -3.4893E-05 0.11639 5.5256E-05 474.7609858280357 64.963 0.66415 64.963 64.641 65.305 0 113 68 2 0 0 0 0.82752 1 14676 14676 25.399 9.5521 1 430420 3170 5326 2003 2006 3928 3928 0.03177784897479796 DESGPSIVH 9 Unmodified _DESGPSIVH_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN46_class_I_Rep_3 1 470.7216491699219 2 470.722164 939.429775 0.02556 1.2032E-05 -0.29402 -0.0001384 -0.26846 -0.00012637 470.7219415478737 31.992 0.54129 31.992 31.808 32.349 0 60 41 2 0 0 0 0.20276 1 5445 5445 20.454 1.1966 1 91792 3171 1146 2004 2007 3929 3929 -0.042362727585668836 DESKFNAVL 9 Unmodified _DESKFNAVL_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS UPN46_class_I_Rep_3 1 511.7614440917969 2 511.761289 1021.50803 0.24975 0.00012781 0.051341 2.6274E-05 0.30109 0.00015409 511.7612060943454 53.187 0.55559 53.187 52.893 53.449 0 93 58 2 0 0 0 0.23293 1 11442 11442 18.146 2.2992 1 227350 3172 2382 2005 2008 3930 3930 -0.001868401733418068 DESLPFIRN 9 Unmodified _DESLPFIRN_ 0 0 0 REV__ENSG00000122862|ENST00000242465|SRGN REV__ENSG00000122862|ENST00000242465|SRGN MULTI-MSMS UPN48_class_I_Rep_2 6 545.779541015625 2 545.780013 1089.54547 0.4393 0.00023976 -0.27588 -0.00015057 0.16342 8.919E-05 545.7797700859918 39.221 0.93428 42.951 42.654 43.588 3.7297 197 91 3 0 0 0 0.41259 2 7043 7043;7097 7.2892 0.56607 1 445290 + 3173 18764 2006 2009 3931;3932 3931 0.0042825109228488145 DESLPFIRN 9 Unmodified _DESLPFIRN_ 0 0 0 REV__ENSG00000122862|ENST00000242465|SRGN REV__ENSG00000122862|ENST00000242465|SRGN MULTI-MSMS UPN48_class_I_Rep_3 7 545.7805786132812 2 545.780013 1089.54547 0.38449 0.00020985 -0.29886 -0.00016311 0.085635 4.6738E-05 545.7798171386765 39.258 0.91637 42.914 42.631 43.547 3.6557 191 86 3 0 0 0 0.41259 1 6957 6957 7.2892 0.56607 1 401090 + 3174 18764 2006 2009 3933 3933 0.0042825109228488145 DESLPSVEP 9 Unmodified _DESLPSVEP_ 0 0 0 REV__ENSG00000260428|ENST00000567180|SCX REV__ENSG00000260428|ENST00000567180|SCX MSMS UPN46_class_I_Rep_3 1 486.727783203125 2 486.729655 971.444756 NaN NaN NaN NaN NaN NaN NaN 26.074 1 26.074 25.574 26.574 0 0 0 0 0.36505 1 3675 3675 7.2892 2.0586 1 + 3175 21395 2007 2010 3934 3934 -0.04210825681218466 DESLSLGVFM 10 Unmodified _DESLSLGVFM_ 0 0 0 LTR2752_dup49|chr3:172208623-172209777:-|2.6925573187318395|0.0179423642331674|7.23|151.0|56|3|anti-sense LTR2752_dup49|chr3:172208623-172209777:-|2.6925573187318395|0.0179423642331674|7.23|151.0|56|3|anti-sense LTR2752_dup49|chr3:172208623-172209777:-|2.6925573187318395|0.0179423642331674|7.23|151.0|56|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 548.7786865234375 2 549.262807 1096.51106 0.49277 0.00027066 -0.076036 -4.1764E-05 0.41673 0.0002289 549.2627423831403 59.232 0.83559 62.513 62.208 63.044 3.2807 102 59 2 0 0 0 0.84575 1 13703 13703 30.637 7.4881 1 150340 3176 15610 2008 2011 3935 3935 -0.03333333110822423 DESLSLGVFM 10 Unmodified _DESLSLGVFM_ 0 0 0 LTR2752_dup49|chr3:172208623-172209777:-|2.6925573187318395|0.0179423642331674|7.23|151.0|56|3|anti-sense LTR2752_dup49|chr3:172208623-172209777:-|2.6925573187318395|0.0179423642331674|7.23|151.0|56|3|anti-sense LTR2752_dup49|chr3:172208623-172209777:-|2.6925573187318395|0.0179423642331674|7.23|151.0|56|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 548.7781982421875 2 549.262807 1096.51106 0.3444 0.00018917 0.16783 9.2182E-05 0.51223 0.00028135 549.2628598697347 59.276 0.90285 62.441 62.143 63.046 3.1651 100 61 2 0 0 0 0.84575 1 13794 13794 30.637 14.789 1 89911 3177 15610 2008 2011 3936 3936 -0.03333333110822423 DESQANHF 8 Unmodified _DESQANHF_ 0 0 0 ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB MULTI-MSMS UPN46_class_I_Rep_3 1 474.1961669921875 2 474.196313 946.378074 -0.15746 -7.4667E-05 -0.18909 -8.9666E-05 -0.34655 -0.00016433 474.1961408908061 23.323 0.73315 23.323 23.016 23.75 0 122 67 2 0 0 0 0.82752 3 2843 2843;2878;2912 81.89 81.89 1 216850 3178 4162 2009 2012 3937;3938;3939 3937 -0.09726016452475506 DESTLRILL 9 Unmodified _DESTLRILL_ 0 0 0 REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 MULTI-MSMS UPN48_class_I_Rep_1 5 530.306396484375 2 530.305864 1058.59717 0.39294 0.00020838 -0.90573 -0.00048032 -0.5128 -0.00027194 530.305024612925 29.182 0.5306 32.732 32.49 33.021 3.5499 89 55 2 0 0 0 0.36392 1 3998 3998 10.074 0.6908 1 138040 + 3179 19709 2010 2013 3940 3940 0.07021994786191499 DESTLRILL 9 Unmodified _DESTLRILL_ 0 0 0 REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 MULTI-MSMS UPN48_class_I_Rep_2 6 530.3060913085938 2 530.305864 1058.59717 0.43891 0.00023276 -1.1587 -0.00061445 -0.71975 -0.00038169 530.3049642955289 29.163 0.58634 32.794 32.532 33.119 3.6316 104 63 2 0 0 0 0.43153 1 4138 4138 6.2058 0.47393 1 123190 + 3180 19709 2010 2013 3941 3941 0.07021994786191499 DETAKKIQY 9 Unmodified _DETAKKIQY_ 0 0 0 nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;ENSG00000121486|ENST00000367506|TRMT1L nc|ENSG00000121486|Q7Z2T5-2|TRMT1L nc|ENSG00000121486|Q7Z2T5-2|TRMT1L MSMS UPN46_class_I_Rep_3 1 548.287353515625 2 548.287671 1094.56079 NaN NaN NaN NaN NaN NaN NaN 27.061 1 27.061 26.561 27.561 0 0 0 0 0.28608 1 3966 3966 11.495 5.7629 1 3181 2358 2011 2014 3942 3942 0.01729117889499321 DETEAVKRY 9 Unmodified _DETEAVKRY_ 0 0 0 nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS UPN46_class_I_Rep_3 1 555.7752075195312 2 555.774928 1109.5353 NaN NaN NaN NaN NaN NaN NaN 26.362 1 26.362 25.862 26.862 0 0 0 0 0.38784 1 3758 3758 3.5965 1.9439 1 3182 1290 2012 2015 3943 3943 -0.015083566329394671 DETELARQM 9 Oxidation (M) _DETELARQM(Oxidation (M))_ DETELARQM(1) DETELARQM(70) 0 0 1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS UPN46_class_I_Rep_3 1 554.7509155273438 2 554.750595 1107.48664 0.11304 6.271E-05 -0.18179 -0.00010085 -0.068752 -3.814E-05 554.7507150714471 28.062 0.33144 28.062 27.884 28.215 0 39 23 2 0 0 0 0.0094161 1 4274 4274 70.332 47.596 1 60446 3183 2827 2013 2016 3944 3944 92 -0.06280593264364143 DETFTHHL 8 Unmodified _DETFTHHL_ 0 0 0 ENSG00000090470|ENST00000204549|PDCD7 ENSG00000090470|ENST00000204549|PDCD7 ENSG00000090470|ENST00000204549|PDCD7 MULTI-MSMS UPN46_class_I_Rep_3 1 500.2300720214844 2 500.230156 998.445759 0.15244 7.6255E-05 -0.058681 -2.9354E-05 0.093758 4.6901E-05 500.229965779392 34.686 0.38669 34.686 34.476 34.862 0 37 28 2 0 0 0 0.82752 1 6219 6219 23.148 0 1 79348 3184 1352 2014 2017 3945 3945 -0.053525665216625384 DETGVLKGF 9 Unmodified _DETGVLKGF_ 0 0 0 ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A ENST00000441170.1_1_4:118496255-118496735:-|nuORF ENST00000441170.1_1_4:118496255-118496735:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 483.2503967285156 2 483.250557 964.486562 0.19022 9.1925E-05 -0.17908 -8.654E-05 0.011142 5.3843E-06 483.2503179677313 57.257 0.46919 57.257 57.012 57.481 0 97 47 3 0 0 0 0.0047261 1 12543 12543 78.728 42.601 1 348440 3185 2394 2015 2018 3946 3946 0.0028977479796594707 DETQIFSYF 9 Unmodified _DETQIFSYF_ 0 0 0 ENST00000477693.1_1_2:122488402-122494426:-|nuORF;ENSG00000155438|ENST00000285814|NIFK ENST00000477693.1_1_2:122488402-122494426:-|nuORF ENST00000477693.1_1_2:122488402-122494426:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 575.2584228515625 2 575.258579 1148.50261 0.49227 0.00028318 -0.2805 -0.00016136 0.21177 0.00012182 575.2583664398262 92.953 0.30998 92.953 92.886 93.196 0 50 29 2 0 0 0 0.16799 2 22552 22518;22552 23.79 8.9515 1 1428200 3186 3702 2016 2019 3947;3948 3948 -0.06570563755826697 DETQVRSL 8 Unmodified _DETQVRSL_ 0 0 0 ENSG00000120280|ENST00000378962|TASL ENSG00000120280|ENST00000378962|TASL ENSG00000120280|ENST00000378962|TASL MSMS UPN46_class_I_Rep_3 1 474.2823791503906 2 474.243264 946.471974 NaN NaN NaN NaN NaN NaN NaN 33.115 1 33.115 32.615 33.615 0 0 0 0 0.33814 1 5754 5754 24.991 3.454 1 3187 2318 2017 2020 3949 3949 -0.0034029735018066276 DETQVRSLY 9 Unmodified _DETQVRSLY_ 0 0 0 ENSG00000120280|ENST00000378962|TASL ENSG00000120280|ENST00000378962|TASL ENSG00000120280|ENST00000378962|TASL MSMS UPN46_class_I_Rep_3 1 555.77490234375 2 555.774928 1109.5353 NaN NaN NaN NaN NaN NaN NaN 43.855 1 43.855 43.355 44.355 0 0 0 0 0.29913 1 8790 8790 10.8 1.4164 1 3188 2318 2018 2021 3950 3950 -0.015083566329394671 DETSALKF 8 Unmodified _DETSALKF_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MSMS UPN46_class_I_Rep_3 1 456.0696105957031 2 455.729458 909.444362 NaN NaN NaN NaN NaN NaN NaN 50.236 1 50.236 49.736 50.736 0 0 0 0 0.0053537 1 10605 10605 58.679 16.584 1 3189 2113 2019 2022 3951 3951 -0.013982006104129141 DETSALKF 8 Unmodified _DETSALKF_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MSMS UPN46_class_I_Rep_3 1 455.66265869140625 2 455.729458 909.444362 NaN NaN NaN NaN NaN NaN NaN 50.278 1 50.278 49.778 50.778 0 0 0 0 0.10209 1 10617 10617 49.933 15.831 1 3190 2113 2019 2022 3952 3952 -0.013982006104129141 DETSALKF 8 Unmodified _DETSALKF_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MSMS UPN46_class_I_Rep_3 1 455.72930908203125 2 455.729458 909.444362 NaN NaN NaN NaN NaN NaN NaN 50.362 1 50.362 49.862 50.862 0 0 0 0 6.2407E-13 1 10639 10639 78.149 27.294 1 3191 2113 2019 2022 3953 3953 -0.013982006104129141 DETTESDD 8 Unmodified _DETTESDD_ 0 0 0 REV__ENSG00000173546|ENST00000308508|CSPG4 REV__ENSG00000173546|ENST00000308508|CSPG4 MSMS UPN46_class_I_Rep_3 1 456.156982421875 2 456.159259 910.303965 NaN NaN NaN NaN NaN NaN NaN 50.284 1 50.284 49.784 50.784 0 0 0 0 0.40404 1 10619 10619 5.2307 0 1 + 3192 20488 2020 2023 3954 3954 -0.15477449125319254 DETTQAMAF 9 Oxidation (M) _DETTQAM(Oxidation (M))AF_ DETTQAM(1)AF DETTQAM(42)AF 0 0 1 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2;ENST00000587275.1_1_19:56173897-56175127:+|nuORF ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MSMS UPN46_class_I_Rep_3 1 515.2124633789062 2 515.213314 1028.41208 0.3048 0.00015704 -0.16075 -8.282E-05 0.14405 7.4216E-05 515.2132155112633 42.91 0.46915 42.91 42.672 43.142 0 64 49 2 0 0 0 0.066364 1 8512 8512 41.956 22.699 1 316490 3193 983 2021 2024 3955 3955 23 -0.10099356075738797 DETTVRKL 8 Unmodified _DETTVRKL_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS UPN46_class_I_Rep_3 1 481.26904296875 2 481.269281 960.52401 -0.10267 -4.9411E-05 -0.16687 -8.0308E-05 -0.26953 -0.00012972 481.269149876787 24.853 1.0664 24.853 24.599 25.665 0 210 104 3 0 0 0 0.82752 1 3351 3351 32.786 5.1569 1 213690 3194 2656 2022 2025 3956 3956 0.04216866063575253 DETVMKRS 8 Unmodified _DETVMKRS_ 0 0 0 REV__ENSG00000154719|ENST00000352957|MRPL39 REV__ENSG00000154719|ENST00000352957|MRPL39 MSMS UPN46_class_I_Rep_3 1 483.2503967285156 2 483.239667 964.46478 NaN NaN NaN NaN NaN NaN NaN 57.291 1 57.291 56.791 57.791 0 0 0 0 0.39624 1 12543 12543 9.3474 2.0582 1 + 3195 19745 2023 2026 3957 3957 -0.01887353222252841 DEVAFRKF 8 Unmodified _DEVAFRKF_ 0 0 0 ENST00000443616.1_1_1:119669641-119669854:-|nuORF;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A ENST00000443616.1_1_1:119669641-119669854:-|nuORF ENST00000443616.1_1_1:119669641-119669854:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 506.2667541503906 2 506.266542 1010.51853 0.29924 0.0001515 -0.11926 -6.0378E-05 0.17998 9.1119E-05 506.2663524284647 42.435 0.69475 42.435 42.219 42.914 0 141 72 3 0 0 0 0.82752 4 8396 8359;8396;8427;8472 71.922 50.176 1 948130 3196 3395 2024 2027 3958;3959;3960;3961 3959 0.01369187271757255 DEVELIHF 8 Unmodified _DEVELIHF_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS UPN46_class_I_Rep_3 1 501.25067138671875 2 501.250557 1000.48656 0.26984 0.00013526 0.15397 7.7178E-05 0.42381 0.00021243 501.2505653681872 71.993 0.37262 71.993 71.723 72.096 0 56 30 2 0 0 0 3.5726E-11 3 16629 16554;16591;16629 161.58 105.04 1 5288800 3197 1389 2025 2028 3962;3963;3964 3964 -0.013662252020367305 DEVELIHF 8 Unmodified _DEVELIHF_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS UPN46_class_I_Rep_3 1 501.2506408691406 2 501.250557 1000.48656 0.27075 0.00013571 0.16697 8.3695E-05 0.43772 0.00021941 501.2505377810626 72.135 0.98399 72.135 71.739 72.723 0 205 95 4 0 0 0 7.4114E-08 3 16666 16666;16702;16744 180.48 113.44 1 2711900 3198 1389 2025 2028 3965;3966;3967 3965 -0.013662252020367305 DEVFSHIL 8 Unmodified _DEVFSHIL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MSMS UPN46_class_I_Rep_3 1 480.1161193847656 2 480.245275 958.475997 0.21826 0.00010482 -0.27105 -0.00013017 -0.05279 -2.5352E-05 480.245030732155 69.455 0.45266 69.455 69.202 69.655 0 62 48 2 0 0 0 0.82752 1 15898 15898 30.225 10.786 1 131890 3199 4865 2026 2029 3968 3968 -0.004902078564668955 DEVFVNKL 8 Unmodified _DEVFVNKL_ 0 0 0 nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32581422-32635732:-|nuORF nc|ENSG00000120616|Q9H2F5-3|EPC1 nc|ENSG00000120616|Q9H2F5-3|EPC1 MULTI-MSMS UPN46_class_I_Rep_3 1 482.26141357421875 2 482.260925 962.507297 0.19612 9.4583E-05 0.41563 0.00020044 0.61175 0.00029502 482.2612147929368 54.433 0.33788 54.433 54.285 54.623 0 47 35 2 0 0 0 0.82752 1 11749 11749 29.082 10.947 1 190510 3200 2329 2027 2030 3969 3969 0.02454365177618456 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN46_class_I_Rep_3 1 558.2881469726562 2 558.288202 1114.56185 0.35596 0.00019873 -0.03531 -1.9713E-05 0.32065 0.00017902 558.2880936870265 53.926 0.73862 53.926 53.633 54.372 0 185 77 3 0 0 0 1.4211E-17 5 11614 11578;11614;11649;11685;11730 146.68 100.98 1 2534500 + 3201 5729 2028 2031 3970;3971;3972;3973;3974 3971 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN46_class_I_Rep_3 1 558.2890625 2 558.288202 1114.56185 NaN NaN NaN NaN NaN NaN NaN 54.483 1 54.483 53.983 54.983 0 0 0 0 0.078583 1 11799 11799 24.882 12.641 1 + 3202 5729 2028 2031 3975 3975 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-SECPEP UPN47_class_I_Rep_1 2 557.780029296875 2 558.288202 1114.56185 0.22884 0.00012776 0.44159 0.00024653 0.67043 0.00037429 558.288428025082 49.276 0.25822 52.935 52.713 52.971 3.6592 37 19 3 0 0 0 0.089889 1 10714 10714 59.013 36.277 1 193010 + 3203 5729 2028 2031 3976 3976 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_2 3 558.2896118164062 2 558.288202 1114.56185 0.41361 0.00023091 0.89584 0.00050014 1.3094 0.00073105 558.2886613358351 49.601 0.37166 52.944 52.669 53.041 3.3431 47 22 3 0 0 0 0.16198 2 10776 10776;10781 44.392 30.486 1 169020 + 3204 5729 2028 2031 3977;3978 3977 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_3 4 558.2894287109375 2 558.288202 1114.56185 0.46371 0.00025889 0.81394 0.00045442 1.2777 0.0007133 558.2887518895299 49.649 0.46349 52.875 52.64 53.104 3.2262 57 25 3 0 0 0 0.00086673 2 10901 10859;10901 85.764 49.637 1 261720 + 3205 5729 2028 2031 3979;3980 3980 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 558.288330078125 2 558.288202 1114.56185 0.46408 0.00025909 -0.072443 -4.0444E-05 0.39163 0.00021865 558.2880916878855 49.517 0.72198 53.041 52.777 53.499 3.5246 107 45 3 0 0 0 0.00061505 5 9993 9953;9993;10033;10072;10116 89.609 64.618 1 499090 + 3206 5729 2028 2031 3981;3982;3983;3984;3985 3982 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_1 5 558.2879638671875 2 558.288202 1114.56185 NaN NaN NaN NaN NaN NaN NaN 49.994 1 53.518 53.018 54.018 3.5246 0 0 0 0.38417 1 10163 10163 6.6304 1.7334 1 + 3207 5729 2028 2031 3986 3986 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_2 6 558.28857421875 2 558.288202 1114.56185 0.43496 0.00024284 -0.10248 -5.7212E-05 0.33249 0.00018562 558.2881317538526 49.304 0.73341 53.022 52.774 53.507 3.7175 116 48 3 0 0 0 3.193E-06 4 9975 9890;9935;9975;10020 105.35 74.077 1 478240 + 3208 5729 2028 2031 3987;3988;3989;3990 3989 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_2 6 558.289794921875 2 558.288202 1114.56185 NaN NaN NaN NaN NaN NaN NaN 49.029 1 52.747 52.247 53.247 3.7175 0 0 0 0.38417 1 9861 9861 4.5289 1.2476 1 + 3209 5729 2028 2031 3991 3991 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 558.2885131835938 2 558.288202 1114.56185 0.31087 0.00017356 0.072323 4.0377E-05 0.38319 0.00021393 558.2882059984826 49.487 0.73156 53.116 52.828 53.559 3.6291 113 48 3 0 0 0 3.193E-06 7 9964 9882;9885;9927;9964;10007;10011;10056 105.35 73.308 1 573040 + 3210 5729 2028 2031 3992;3993;3994;3995;3996;3997;3998 3995 0.00915332258387025 DEVGGEALGRL 11 Unmodified _DEVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MATCH UPN48_class_I_Rep_3 7 2 558.288202 1114.56185 0.30502 0.00017029 -0.31971 -0.00017849 -0.014687 -8.1994E-06 558.2881532365903 50.011 0.068665 53.632 53.573 53.642 3.621 -0.14693 -0.00031305 NaN 146.68 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 49462 + 3211 5729 2028 2031 0.00915332258387025 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MSMS UPN46_class_I_Rep_3 1 436.7398376464844 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 67.608 1 67.608 67.108 68.108 0 0 0 0 0.24337 1 15396 15396 43.858 11.553 1 3212 1089 2029 2032 3999 3999 0.024223897692422725 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MSMS UPN46_class_I_Rep_3 1 436.7397766113281 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 67.734 1 67.734 67.234 68.234 0 0 0 0 2.5562E-74 1 15430 15430 120.45 27.628 1 3213 1089 2029 2032 4000 4000 0.024223897692422725 DEVIGQVL 8 Unmodified _DEVIGQVL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MSMS UPN46_class_I_Rep_3 1 436.73968505859375 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 67.867 1 67.867 67.367 68.367 0 0 0 0 0.26294 1 15468 15468 37.974 5.6685 1 3214 1089 2029 2032 4001 4001 0.024223897692422725 DEVIWGTYN 9 Unmodified _DEVIWGTYN_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|339|2|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|339|2|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|339|2|anti-sense MSMS UPN46_class_I_Rep_3 1 548.835693359375 2 548.750921 1095.48729 NaN NaN NaN NaN NaN NaN NaN 72.009 1 72.009 71.509 72.509 0 0 0 0 0.39518 1 16620 16620 1.8442 0 1 3215 13837 2030 2033 4002 4002 -0.05663430552999671 DEVKFKSF 8 Unmodified _DEVKFKSF_ 0 0 0 ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2 ENST00000470876.1_1_5:133900168-133909634:+|nuORF ENST00000470876.1_1_5:133900168-133909634:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 500.26043701171875 2 500.260925 998.507297 0.29826 0.00014921 -0.012977 -6.4917E-06 0.28529 0.00014272 500.2608538591131 41.716 0.48026 41.716 41.441 41.921 0 79 53 2 0 0 0 0.82752 2 8154 8154;8168 57.722 27.085 1 215410 3216 876 2031 2034 4003;4004 4003 0.007983651776271472 DEVKFKSY 8 Unmodified _DEVKFKSY_ 0 0 0 ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-3|JADE1;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1 ENSG00000102221|ENST00000614628|JADE3 ENSG00000102221|ENST00000614628|JADE3 MULTI-MSMS UPN46_class_I_Rep_3 1 508.2581481933594 2 508.258382 1014.50221 0.125 6.3532E-05 -0.10037 -5.1013E-05 0.024631 1.2519E-05 508.2582717158448 33.106 0.54741 33.106 32.873 33.421 0 55 42 2 0 0 0 0.82752 1 5745 5745 17.113 8.5196 1 124420 3217 1606 2032 2035 4005 4005 -0.0044593868499305245 DEVKLPAKL 9 Unmodified _DEVKLPAKL_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS UPN46_class_I_Rep_3 1 506.80511474609375 2 506.8055 1011.59645 NaN NaN NaN NaN NaN NaN NaN 48.665 1 48.665 48.165 49.165 0 0 0 0 0.2408 1 10159 10159 13.906 6.6168 1 3218 4792 2033 2036 4006 4006 0.0911120013714708 DEVKSTIKF 9 Unmodified _DEVKSTIKF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MSMS UPN46_class_I_Rep_3 1 533.7931518554688 2 533.792589 1065.57063 NaN NaN NaN NaN NaN NaN NaN 41.329 1 41.329 40.829 41.829 0 0 0 0 0.045102 1 8093 8093 38.615 0.43918 1 3219 5456 2034 2037 4007 4007 0.04046305894848956 DEVLLQKL 8 Unmodified _DEVLLQKL_ 0 0 0 ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF;ENSG00000092020|ENST00000261475|PPP2R3C ENST00000556254.1_1_14:35579616-35591165:-|nuORF ENST00000556254.1_1_14:35579616-35591165:-|nuORF MSMS UPN46_class_I_Rep_3 1 479.284423828125 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 60.78 1 60.78 60.28 61.28 0 0 0 0 0.367 1 13498 13498 18.146 6.5061 1 3220 1384 2035 2038 4008 4008 0.0742322472875685 DEVNFLVY 8 Unmodified _DEVNFLVY_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000101849.17,TBL1X,chrX,+,I23.1,9711777,9714901|30|6.12|1|intron ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MSMS UPN46_class_I_Rep_3 1 499.7449645996094 2 499.745108 997.475663 NaN NaN NaN NaN NaN NaN NaN 83.081 1 83.081 82.581 83.581 0 0 0 0 0.32361 1 19712 19712 28.487 4.2769 1 3221 1391 2036 2039 4009 4009 -0.023176275763375997 DEVNGLISM 9 Oxidation (M) _DEVNGLISM(Oxidation (M))_ DEVNGLISM(1) DEVNGLISM(86) 0 0 1 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MSMS UPN46_class_I_Rep_3 1 497.2314147949219 2 497.231507 992.448462 0.23288 0.00011579 0.14144 7.0329E-05 0.37432 0.00018612 497.2315610466822 54.128 0.60899 54.128 53.803 54.412 0 124 64 2 0 0 0 0.0070571 1 11654 11654 86.332 37.986 1 597920 3222 1882 2037 2040 4010 4010 55 -0.04806479179012513 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.3023681640625 2 601.301644 1200.58874 NaN NaN NaN NaN NaN NaN NaN 36.625 1 36.625 36.125 37.125 0 0 0 0 0.53105 1 6809 6809 29.841 19.017 1 3223 852 2038 2041 4011 4011 -0.0035355913041712483 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.302490234375 2 601.301644 1200.58874 NaN NaN NaN NaN NaN NaN NaN 36.778 1 36.778 36.278 37.278 0 0 0 0 0.53105 1 6854 6854 35.612 23.081 1 3224 852 2038 2041 4012 4012 -0.0035355913041712483 DEVQVVRGHY 10 Unmodified _DEVQVVRGHY_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.3005981445312 2 601.301644 1200.58874 NaN NaN NaN NaN NaN NaN NaN 36.813 1 36.813 36.313 37.313 0 0 0 0 0.53105 1 6865 6865 32.037 17.199 1 3225 852 2038 2041 4013 4013 -0.0035355913041712483 DEVRTLTY 8 Unmodified _DEVRTLTY_ 0 0 0 nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8 nc|ENSG00000126457|Q99873-5|PRMT1 nc|ENSG00000126457|Q99873-5|PRMT1 MULTI-MSMS UPN46_class_I_Rep_3 1 498.75341796875 2 498.753464 995.492375 0.28967 0.00014448 0.14737 7.3502E-05 0.43705 0.00021798 498.7534592417262 43.088 0.80413 43.088 42.807 43.611 0 216 79 4 0 0 0 0.82752 4 8532 8532;8563;8607;8643 88.954 34.87 1 1456900 3226 2535 2039 2042 4014;4015;4016;4017 4014 -0.005551266903921714 DEVWSRFCR 9 Unmodified _DEVWSRFCR_ 0 0 0 REV__LTR16C_dup4570|chr14:89610167-89610566:+|1.196195089495108|0.0131362565033151|6.51|150.0|17|2|anti-sense REV__LTR16C_dup4570|chr14:89610167-89610566:+|1.196195089495108|0.0131362565033151|6.51|150.0|17|2|anti-sense MSMS UPN47_class_I_Rep_2 3 599.2763061523438 2 599.277115 1196.53968 NaN NaN NaN NaN NaN NaN NaN 25.596 1 29.079 28.579 29.579 3.483 0 0 0 0.4007 1 3578 3578 0.52476 0 1 + 3227 30856 2040 2043 4018 4018 -0.0507317069104829 DEWDDDDDF 9 Unmodified _DEWDDDDDF_ 0 0 0 REV__ENSG00000197299|ENST00000355112|BLM REV__ENSG00000197299|ENST00000355112|BLM MSMS UPN48_class_I_Rep_3 7 585.7803955078125 2 586.188548 1170.36254 NaN NaN NaN NaN NaN NaN NaN 17.303 1 20.867 20.367 21.367 3.5637 0 0 0 0.4029 1 964 964 0 0 1 + 3228 21074 2041 2044 4019 4019 -0.21582392550840268 DEWRARGFH 9 Unmodified _DEWRARGFH_ 0 0 0 REV__AluSx_dup60597|chrX:71543793-71544085:-|1.0565930505140355|0.2565167732326732|2.04|150.0|5|2|sense REV__AluSx_dup60597|chrX:71543793-71544085:-|1.0565930505140355|0.2565167732326732|2.04|150.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 587.2800903320312 2 587.281046 1172.54754 -0.071949 -4.2254E-05 -0.89139 -0.0005235 -0.96334 -0.00056575 587.2805250070128 27.733 0.56159 31.499 31.266 31.828 3.7662 74 46 2 0 0 0 0.49026 1 4119 4119 1.6526 0 1 114760 + 3229 17147 2042 2045 4020 4020 -0.03183275379251427 DEWYDYYD 8 Unmodified _DEWYDYYD_ 0 0 0 REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|191|3|anti-sense REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|191|3|anti-sense MSMS UPN47_class_I_Rep_2 3 584.7122802734375 2 584.708919 1167.40329 NaN NaN NaN NaN NaN NaN NaN 113.25 1 116.77 116.27 117.27 3.5171 0 0 0 0.40746 1 27539 27539 0.69038 0.16561 1 + 3230 31442 2043 2046 4021 4021 -0.17372006440564292 DEYDFYRSF 9 Unmodified _DEYDFYRSF_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS UPN46_class_I_Rep_3 1 621.2597045898438 2 621.259111 1240.50367 0.6133 0.00038102 -0.12193 -7.575E-05 0.49137 0.00030527 621.259007851879 69.261 0.55893 69.261 68.988 69.547 0 133 59 3 0 0 0 0.0047467 1 15868 15868 93.938 73.524 1 281720 3231 4549 2044 2047 4022 4022 -0.10696349386921611 DEYIYRHFF 9 Unmodified _DEYIYRHFF_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS UPN46_class_I_Rep_3 1 645.8014526367188 2 645.301113 1288.58767 0.692 0.00044655 -0.25798 -0.00016647 0.43403 0.00028008 645.3008666036012 64.892 0.30284 64.892 64.649 64.952 0 48 28 2 0 0 0 0.022868 2 14635 14596;14635 61.602 46.353 1 182510 3232 5783 2045 2048 4023;4024 4024 -0.04507773499358336 DEYKVTAF 8 Unmodified _DEYKVTAF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS UPN46_class_I_Rep_3 1 486.7374572753906 2 486.737283 971.460012 0.22397 0.00010902 0.0017093 8.3197E-07 0.22568 0.00010985 486.73720894175494 51.357 0.61161 51.357 51.063 51.675 0 110 66 2 0 0 0 0.82752 1 10907 10907 51.63 11.68 1 406590 3233 2566 2046 2049 4025 4025 -0.026859140933765957 DEYQFVERL 9 Unmodified _DEYQFVERL_ 0 0 0 ENSG00000149792|ENST00000279242|MRPL49 ENSG00000149792|ENST00000279242|MRPL49 ENSG00000149792|ENST00000279242|MRPL49 MULTI-MSMS UPN46_class_I_Rep_3 1 600.2894897460938 2 599.790578 1197.5666 0.52427 0.00031445 -1.7171 -0.0010299 -1.1928 -0.00071543 600.2900216579848 66.147 0.3901 66.147 66.023 66.413 0 63 39 2 0 0 0 0.06432 5 15012 14971;14982;15012;15023;15031 42.835 22.421 1 100650 3234 3552 2047 2050 4026;4027;4028;4029;4030 4028 -0.024277835988414154 DEYSLVREL 9 Unmodified _DEYSLVREL_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1;ENST00000378192.2_1_9:35723947-35725691:-|nuORF nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MSMS UPN46_class_I_Rep_3 1 562.2858276367188 2 562.285128 1122.5557 0.3867 0.00021744 -0.17399 -9.7831E-05 0.21271 0.00011961 562.285008032757 66.561 0.33904 66.561 66.346 66.685 0 63 36 2 0 0 0 0.052941 1 15134 15134 47.732 22.741 1 282440 3235 3006 2048 2051 4031 4031 -0.0006718597312556085 DFAPLVDFE 9 Unmodified _DFAPLVDFE_ 0 0 0 REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF MSMS UPN46_class_I_Rep_3 1 526.7496948242188 2 526.75039 1051.48623 NaN NaN NaN NaN NaN NaN NaN 112.13 1 112.13 111.63 112.63 0 0 0 0 0.39518 1 27679 27679 1.8442 0.19162 1 + 3236 22951 2049 2052 4032 4032 -0.03745644921900748 DFCPTFCHL 9 Unmodified _DFCPTFCHL_ 0 0 0 REV__L1ME4b_dup16877|chr14:102169895-102170623:-|1.07404332991525|0.0404729572694602|4.73|151.0|41|2|anti-sense REV__L1ME4b_dup16877|chr14:102169895-102170623:-|1.07404332991525|0.0404729572694602|4.73|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7244873046875 2 541.725338 1081.43612 0.42817 0.00023195 -2.6113 -0.0014146 -2.1831 -0.0011826 541.7239439733169 74.636 0.23158 78.126 78.056 78.288 3.49 32 23 2 0 0 0 0.46434 1 17650 17650 4.3292 0.38484 1 108160 + 3237 28264 2050 2053 4033 4033 -0.10133794123044026 DFDDQGDLTPK 11 Unmodified _DFDDQGDLTPK_ 0 0 0 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 MSMS UPN46_class_I_Rep_3 1 625.375244140625 2 625.780407 1249.54626 NaN NaN NaN NaN NaN NaN NaN 22.733 1 22.733 22.233 23.233 0 0 0 0 0.38417 1 2746 2746 1.1933 0 1 3238 764 2051 2054 4034 4034 -0.06852999049351638 DFDIPFFQF 9 Unmodified _DFDIPFFQF_ 0 0 0 REV__L1MA6_dup4291|chr13:21317231-21317843:-|1.488928907269896|0.0099356437248329|7.23|151.0|35|3|anti-sense REV__L1MA6_dup4291|chr13:21317231-21317843:-|1.488928907269896|0.0099356437248329|7.23|151.0|35|3|anti-sense MSMS UPN48_class_I_Rep_2 6 588.2716064453125 2 588.274032 1174.53351 NaN NaN NaN NaN NaN NaN NaN 70.552 1 74.088 73.588 74.588 3.5359 0 0 0 0.39518 1 16418 16418 1.8442 0.19162 1 + 3239 25466 2052 2055 4035 4035 -0.04677365650900356 DFDTVNKTPH 10 Unmodified _DFDTVNKTPH_ 0 0 0 nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 nc|ENSG00000106105|P41250-2|GARS1 nc|ENSG00000106105|P41250-2|GARS1 MSMS UPN48_class_I_Rep_1 5 587.2796020507812 2 587.280377 1172.5462 NaN NaN NaN NaN NaN NaN NaN 27.969 1 31.527 31.027 32.027 3.5571 0 0 0 0.53105 1 3678 3678 1.6526 0 1 3240 1775 2053 2056 4036 4036 -0.03316954258662008 DFEDKVFYR 9 Unmodified _DFEDKVFYR_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MSMS UPN48_class_I_Rep_2 6 406.8661193847656 3 406.864506 1217.57169 NaN NaN NaN NaN NaN NaN NaN 69.439 1 72.961 72.461 73.461 3.5216 0 0 0 0.4007 1 16087 16087 0.23584 0.076522 1 3241 2305 2054 2057 4037 4037 -0.02839479736235262 DFEEESDDDD 10 Unmodified _DFEEESDDDD_ 0 0 0 ENSG00000150316|ENST00000279839|CWC15 ENSG00000150316|ENST00000279839|CWC15 ENSG00000150316|ENST00000279839|CWC15 MSMS UPN48_class_I_Rep_1 5 405.79742431640625 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 114.96 1 118.59 118.09 119.09 3.6301 0 0 0 0.53105 1 27956 27956 0.13989 0 1 3242 3559 2055 2058 4038 4038 -0.22511034967214982 DFEPNFLN 8 Unmodified _DFEPNFLN_ 0 0 0 REV__LTR5_Hs_dup487|chr15:65733653-65734621:+|2.215119202850881|0.0567924633901417|5.29|151.0|53|2|anti-sense REV__LTR5_Hs_dup487|chr15:65733653-65734621:+|2.215119202850881|0.0567924633901417|5.29|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_1 2 498.2264099121094 2 498.227082 994.439611 NaN NaN NaN NaN NaN NaN NaN 24.058 1 27.788 27.288 28.288 3.7298 0 0 0 0.40643 1 3081 3081 2.0598 0.40713 1 + 3243 30960 2056 2059 4039 4039 -0.057830847531931795 DFFLQEVHS 9 Unmodified _DFFLQEVHS_ 0 0 0 ENST00000321250.12_1_8:29965226-29965448:+|nuORF ENST00000321250.12_1_8:29965226-29965448:+|nuORF ENST00000321250.12_1_8:29965226-29965448:+|nuORF MSMS UPN48_class_I_Rep_2 6 561.2782592773438 2 561.266739 1120.51892 NaN NaN NaN NaN NaN NaN NaN 38.079 1 41.795 41.295 42.295 3.7164 0 0 0 0.38784 1 6592 6592 3.5965 0 1 3244 6152 2057 2060 4040 4040 -0.03651437799044288 DFFPILQLI 9 Unmodified _DFFPILQLI_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS UPN47_class_I_Rep_2 3 553.2516479492188 2 553.318243 1104.62193 NaN NaN NaN NaN NaN NaN NaN 60.436 1 63.701 63.201 64.201 3.2654 0 0 0 0.38916 1 14141 14141 3.2813 0.97858 1 + 3245 21221 2058 2061 4041 4041 0.07380674659566466 DFFYFWKF 8 Unmodified _DFFYFWKF_ 0 0 0 L1M7_dup1899|chr9:90817227-90817778:-|1.4629290184001753|0.0061109446467639|7.9|151.0|21|1|anti-sense L1M7_dup1899|chr9:90817227-90817778:-|1.4629290184001753|0.0061109446467639|7.9|151.0|21|1|anti-sense L1M7_dup1899|chr9:90817227-90817778:-|1.4629290184001753|0.0061109446467639|7.9|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 600.2841186523438 2 600.28166 1198.54877 NaN NaN NaN NaN NaN NaN NaN 55.29 1 58.769 58.269 59.269 3.4785 0 0 0 0.40746 1 12538 12538 0.69038 0.088878 1 3246 9233 2059 2062 4042 4042 -0.04256454063056481 DFHWESTLH 9 Unmodified _DFHWESTLH_ 0 0 0 REV__L1MC3_dup1979|chr2:239056283-239057248:+|1.7184693278644003|0.396283770173394|2.12|151.0|29|3|sense REV__L1MC3_dup1979|chr2:239056283-239057248:+|1.7184693278644003|0.396283770173394|2.12|151.0|29|3|sense MSMS UPN47_class_I_Rep_3 4 586.2623291015625 2 586.261988 1170.50942 NaN NaN NaN NaN NaN NaN NaN 31.316 1 34.615 34.115 35.115 3.2991 0 0 0 0.39428 1 5320 5320 2.0598 0 1 + 3247 26726 2060 2063 4043 4043 -0.06901206084557998 DFHYFFYRYLL 11 Unmodified _DFHYFFYRYLL_ 0 0 0 LTR13A_dup170|chr19:52931631-52932596:+|1.1930724830117905|0.0377058835817276|4.98|151.0|37|1|anti-sense;LTR13A_dup123|chr15:78902313-78903239:-|1.9922175766127288|0.1737464571396746|3.52|151.0|32|1|anti-sense;LTR13A_dup90|chr10:102758571-102759531:-|1.553000543722746|0.1454058437530838|3.42|151.0|34|1|anti-sense LTR13A_dup170|chr19:52931631-52932596:+|1.1930724830117905|0.0377058835817276|4.98|151.0|37|1|anti-sense LTR13A_dup170|chr19:52931631-52932596:+|1.1930724830117905|0.0377058835817276|4.98|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 528.5957641601562 3 528.594238 1582.76089 NaN NaN NaN NaN NaN NaN NaN 31.449 1 31.449 30.949 31.949 0 0 0 0 0.38417 1 5256 5256 0.50596 0.051438 1 3248 15568 2061 2064 4044 4044 -0.007184074429005705 DFIDVIKL 8 Unmodified _DFIDVIKL_ 0 0 0 MLT1D_dup16705|chr15:64579910-64580383:+|1.4435116244526685|0.0064676308880877|7.8|151.0|11|2|sense MLT1D_dup16705|chr15:64579910-64580383:+|1.4435116244526685|0.0064676308880877|7.8|151.0|11|2|sense MLT1D_dup16705|chr15:64579910-64580383:+|1.4435116244526685|0.0064676308880877|7.8|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 481.77972412109375 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 21.899 1 25.574 25.074 26.074 3.6749 0 0 0 0.40472 1 2454 2454 4.3292 0 1 3249 16341 2062 2065 4045 4045 0.06612126217078185 DFITDQHFT 9 Unmodified _DFITDQHFT_ 0 0 0 REV__ENSG00000198440|ENST00000333201|ZNF583 REV__ENSG00000198440|ENST00000333201|ZNF583 MULTI-MSMS UPN48_class_I_Rep_1 5 562.2574462890625 2 562.256371 1122.49819 0.44562 0.00025055 -0.13873 -7.8002E-05 0.30689 0.00017255 562.256235846283 50.23 1.1309 53.755 53.347 54.478 3.5246 179 72 4 0 0 0 0.47197 1 10393 10393 3.5965 3.5965 1 851630 + 3250 21128 2063 2066 4046 4046 -0.058160281787195345 DFIVVTGKL 9 Unmodified _DFIVVTGKL_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-SECPEP UPN46_class_I_Rep_3 1 495.612060546875 2 496.294768 990.574983 0.18425 9.1443E-05 1.5582 0.0007733 1.7424 0.00086474 496.295412836644 36.249 0.058369 36.249 36.238 36.296 0 7 4 3 0 0 0 0.12281 1 6694 6694 1.8442 0 1 813850 + 3251 21389 2064 2067 4047 4047 0.07931815108440787 DFIYWFQWRKK 11 Unmodified _DFIYWFQWRKK_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 539.6177978515625 3 539.617266 1615.82997 0.38294 0.00020664 0.91271 0.00049252 1.2957 0.00069916 539.6177432041497 42.998 0.63288 46.509 46.138 46.771 3.5103 69 46 2 0 0 0 0.68024 2 8019 7938;8019 0.50596 0.41111 1 151060 3252 12976 2065 2068 4048;4049 4049 0.0466867657662533 DFIYWFQWRKK 11 Unmodified _DFIYWFQWRKK_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense MSMS UPN48_class_I_Rep_2 6 539.6180419921875 3 539.617266 1615.82997 NaN NaN NaN NaN NaN NaN NaN 42.38 1 46.138 45.638 46.638 3.7579 0 0 0 0.38417 1 7840 7840 0.094841 0 1 3253 12976 2065 2068 4050 4050 0.0466867657662533 DFIYWFQWRKK 11 Unmodified _DFIYWFQWRKK_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|197|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 539.617266 1615.82997 0.47155 0.00025446 0.64462 0.00034785 1.1162 0.00060231 539.6175948807365 42.785 0.45298 46.426 46.193 46.646 3.6415 -0.041189 -0.00024606 NaN 0.50596 43 34 2 NaN NaN NaN NaN 0 NaN NaN 0 115310 3254 12976 2065 2068 0.0466867657662533 DFKGHTLK 8 Unmodified _DFKGHTLK_ 0 0 0 L1MEd_dup9900|chr7:102164810-102165121:+|1.3119133023650638|0.0245369093118395|5.74|151.0|1|1|sense L1MEd_dup9900|chr7:102164810-102165121:+|1.3119133023650638|0.0245369093118395|5.74|151.0|1|1|sense L1MEd_dup9900|chr7:102164810-102165121:+|1.3119133023650638|0.0245369093118395|5.74|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 473.25994873046875 2 473.261259 944.507966 -0.82473 -0.00039031 -0.18735 -8.8668E-05 -1.0121 -0.00047898 473.2609507998776 16.375 0.75493 19.737 19.521 20.276 3.3619 114 88 2 0 0 0 0.82752 1 970 970 6.7232 0.99131 1 59969 3255 13224 2066 2069 4051 4051 0.03349204617336454 DFKHKSAL 8 Unmodified _DFKHKSAL_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MULTI-MSMS UPN47_class_I_Rep_1 2 473.2608337402344 2 473.261259 944.507966 -0.38719 -0.00018324 -0.35035 -0.00016581 -0.73754 -0.00034905 473.2608348044986 16.01 0.54148 19.507 19.344 19.886 3.4968 142 66 3 0 0 0 0.82752 3 929 929;958;991 13.906 3.0821 1 119420 3256 5143 2067 2070 4052;4053;4054 4052 0.033492046173250856 DFKHKSAL 8 Unmodified _DFKHKSAL_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MULTI-MSMS UPN47_class_I_Rep_2 3 473.2607727050781 2 473.261259 944.507966 -0.29847 -0.00014125 -0.6446 -0.00030506 -0.94306 -0.00044632 473.2607576631727 16.225 0.62214 19.612 19.424 20.047 3.3864 139 78 2 0 0 0 0.82752 2 996 996;1024 15.248 7.3383 1 64032 3257 5143 2067 2070 4055;4056 4055 0.033492046173250856 DFKHKSAL 8 Unmodified _DFKHKSAL_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MULTI-MSMS UPN47_class_I_Rep_3 4 473.2604064941406 2 473.261259 944.507966 -0.82473 -0.00039031 -0.18735 -8.8668E-05 -1.0121 -0.00047898 473.2609507998776 16.375 0.75493 19.737 19.521 20.276 3.3619 114 88 2 0 0 0 0.82752 2 1029 1001;1029 19.257 6.7254 1 59969 3258 5143 2067 2070 4057;4058 4058 0.033492046173250856 DFKRKEALS 9 Unmodified _DFKRKEALS_ 0 0 0 ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4 ENST00000495849.5_1_2:191897681-192012929:-|nuORF ENST00000495849.5_1_2:191897681-192012929:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.3041381835938 2 547.303655 1092.59276 NaN NaN NaN NaN NaN NaN NaN 25.542 1 28.893 28.393 29.393 3.3509 0 0 0 0.3967 1 3607 3607 1.4819 0.68827 1 3259 3083 2068 2071 4059 4059 0.050165303632638825 DFKVYCFIHM 10 Unmodified _DFKVYCFIHM_ 0 0 0 REV__ENSG00000003436.16,TFPI,chr2,-,I4.1,187520614,187529363|25|10.97|1|intron REV__ENSG00000003436.16,TFPI,chr2,-,I4.1,187520614,187529363|25|10.97|1|intron MSMS UPN47_class_I_Rep_1 2 434.882080078125 3 434.871838 1301.59369 NaN NaN NaN NaN NaN NaN NaN 110.68 1 114.26 113.76 114.76 3.5835 0 0 0 0.53105 1 27286 27286 0.69767 0.07084 1 + 3260 17516 2069 2072 4060 4060 -0.04504714583686109 DFLLKPEL 8 Unmodified _DFLLKPEL_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000123136|ENST00000242776|DDX39A;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MULTI-MSMS UPN47_class_I_Rep_1 2 487.7810363769531 2 487.781493 973.548434 0.11036 5.3831E-05 -0.16245 -7.9239E-05 -0.052087 -2.5407E-05 487.7813573788138 69.075 0.31931 72.442 72.233 72.552 3.3678 36 22 2 0 0 0 0.82752 2 16713 16713;16741 21.537 3.3906 1 177430 3261 5440 2070 2073 4061;4062 4061 0.06060126217084871 DFLLKPEL 8 Unmodified _DFLLKPEL_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000123136|ENST00000242776|DDX39A;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MULTI-MSMS UPN47_class_I_Rep_1 2 487.7818603515625 2 487.781493 973.548434 0.11185 5.456E-05 0.19986 9.7487E-05 0.31171 0.00015205 487.78141349359464 69.23 0.29317 72.598 72.518 72.811 3.3678 34 24 2 0 0 0 0.82752 1 16754 16754 18.146 3.3081 1 117110 3262 5440 2070 2073 4063 4063 0.06060126217084871 DFLLKPEL 8 Unmodified _DFLLKPEL_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000123136|ENST00000242776|DDX39A;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MULTI-MSMS UPN47_class_I_Rep_2 3 487.78131103515625 2 487.781493 973.548434 0.21686 0.00010578 -0.11171 -5.4488E-05 0.10516 5.1293E-05 487.78133888108675 69.354 0.62711 72.63 72.38 73.007 3.2761 87 51 2 0 0 0 0.82752 4 16862 16817;16862;16864;16910 27.629 3.6082 1 164500 3263 5440 2070 2073 4064;4065;4066;4067 4065 0.06060126217084871 DFLLKPEL 8 Unmodified _DFLLKPEL_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000123136|ENST00000242776|DDX39A;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MULTI-MSMS UPN47_class_I_Rep_3 4 487.7818603515625 2 487.781493 973.548434 0.16757 8.174E-05 -0.19541 -9.5315E-05 -0.027831 -1.3575E-05 487.7812754093641 69.347 0.68229 72.551 72.295 72.977 3.2044 95 53 2 0 0 0 0.82752 3 16984 16903;16940;16984 27.629 7.898 1 174140 3264 5440 2070 2073 4068;4069;4070 4070 0.06060126217084871 DFLLKTSL 8 Unmodified _DFLLKTSL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_1 2 468.7735900878906 2 468.773668 935.532783 0.08257 3.8706E-05 0.030782 1.443E-05 0.11335 5.3136E-05 468.7734921204091 64.77 0.38235 68.125 67.911 68.293 3.3557 51 31 2 0 0 0 0.82752 1 15400 15400 21.537 3.3906 1 71952 3265 2763 2071 2074 4071 4071 0.06243839700039189 DFLLKTSL 8 Unmodified _DFLLKTSL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MATCH UPN47_class_I_Rep_2 3 2 468.773668 935.532783 -0.013735 -6.4385E-06 0.14682 6.8825E-05 0.13308 6.2386E-05 468.77348978187825 64.962 0.41702 68.217 68.105 68.522 3.2556 0.031535 5.9578E-05 NaN 21.537 52 32 2 NaN NaN NaN NaN 0 NaN NaN 0 79574 3266 2763 2071 2074 0.06243839700039189 DFLLKTSL 8 Unmodified _DFLLKTSL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MATCH UPN47_class_I_Rep_3 4 2 468.773668 935.532783 -0.048708 -2.2833E-05 0.10068 4.7195E-05 0.051969 2.4362E-05 468.7735081283535 65.035 0.21224 68.215 68.138 68.35 3.1795 0.028926 1.6318E-05 NaN 21.537 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 45266 3267 2763 2071 2074 0.06243839700039189 DFNSYNSF 8 Unmodified _DFNSYNSF_ 0 0 0 REV__L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|35|2|anti-sense REV__L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|35|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 497.2016906738281 2 497.201064 992.387576 0.15507 7.71E-05 0.21969 0.00010923 0.37475 0.00018633 497.20113058701423 32.781 0.5645 36.471 36.183 36.748 3.6896 102 67 2 0 0 0 0.82752 1 5036 5036 2.0598 0 1 106620 + 3268 26793 2072 2075 4072 4072 -0.10892248166942409 DFPEPFYVY 9 Unmodified _DFPEPFYVY_ 0 0 0 REV__ERV3-16A3_I-int_dup2974|chr7:45052523-45054121:-|7.045603909042504|0.0841493301826846|6.39|151.0|64|1|anti-sense REV__ERV3-16A3_I-int_dup2974|chr7:45052523-45054121:-|7.045603909042504|0.0841493301826846|6.39|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_3 4 588.7669067382812 2 588.76604 1175.51753 NaN NaN NaN NaN NaN NaN NaN 54.341 1 57.527 57.027 58.027 3.1856 0 0 0 0.36505 1 12331 12331 7.2892 0.93513 1 + 3269 23247 2073 2076 4073 4073 -0.06321071887805374 DFQTKFAL 8 Unmodified _DFQTKFAL_ 0 0 0 ENST00000481122.5_1_3:38180729-38182774:+|nuORF;nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88 ENST00000481122.5_1_3:38180729-38182774:+|nuORF ENST00000481122.5_1_3:38180729-38182774:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 485.3080749511719 2 485.255643 968.496732 0.057943 2.8117E-05 0.79151 0.00038408 0.84945 0.0004122 485.25635374214175 59.866 0.26431 63.031 62.925 63.19 3.1651 25 16 2 0 0 0 0.72333 1 14043 14043 6.7232 1.4925 1 54588 3270 4600 2074 2077 4074 4074 0.011223825231695628 DFQVRLGY 8 Unmodified _DFQVRLGY_ 0 0 0 REV__L1PB1_dup5443|chr6:144030350-144032028:-|1.438032181216929|0.0075306940147946|7.58|151.0|62|1|anti-sense REV__L1PB1_dup5443|chr6:144030350-144032028:-|1.438032181216929|0.0075306940147946|7.58|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_3 4 499.2606506347656 2 499.258717 996.50288 NaN NaN NaN NaN NaN NaN NaN 27.871 1 31.205 30.705 31.705 3.3337 0 0 0 0.40404 1 4294 4294 5.2307 0 1 + 3271 30441 2075 2078 4075 4075 0.004489007547249457 DFRGKALR 8 Unmodified _DFRGKALR_ 0 0 0 L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|98|3|anti-sense L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|98|3|anti-sense L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|98|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.7800598144531 2 481.780151 961.545748 NaN NaN NaN NaN NaN NaN NaN 21.643 1 25.318 24.818 25.818 3.6749 0 0 0 0.40404 1 2382 2382 5.2307 0 1 3272 11880 2076 2079 4076 4076 0.06343715602781685 DFRGKALR 8 Unmodified _DFRGKALR_ 0 0 0 L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|98|3|anti-sense L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|98|3|anti-sense L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|98|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.77886962890625 2 481.780151 961.545748 -0.20382 -9.8197E-05 -0.42282 -0.00020371 -0.62664 -0.0003019 481.7798419466246 21.963 0.83426 25.387 25.139 25.973 3.4241 114 84 2 0 0 0 0.82752 1 2597 2597 5.2307 0 1 83028 3273 11880 2076 2079 4077 4077 0.06343715602781685 DFRLFLKKG 9 Unmodified _DFRLFLKKG_ 0 0 0 REV__nc|ENSG00000154328|Q969S2-2|NEIL2 REV__nc|ENSG00000154328|Q969S2-2|NEIL2 MSMS UPN46_class_I_Rep_3 1 562.3345336914062 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 71.976 1 71.976 71.476 72.476 0 0 0 0 0.4007 1 16611 16611 0.52476 0 1 + 3274 19736 2077 2080 4078 4078 0.09854301502264207 DFRPISLMNTD 11 Unmodified _DFRPISLMNTD_ 0 0 0 L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.8789367675781 3 436.879939 1307.61799 -0.048503 -2.119E-05 -0.12266 -5.3586E-05 -0.17116 -7.4777E-05 437.21472784047387 101.1 0.2028 104.71 104.57 104.77 3.612 37 25 2 0 0 0 0.68219 1 24419 24419 0.32927 0.060251 1 66959 3275 14542 2078 2081 4079 4079 -0.02351782896471377 DFRPISLMNTD 11 Unmodified _DFRPISLMNTD_ 0 0 0 L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 436.879939 1307.61799 0.15073 6.5852E-05 -0.53349 -0.00023307 -0.38275 -0.00016722 436.87894950573883 100.86 0.18092 104.65 104.6 104.78 3.7942 -0.016035 -0.00048334 NaN 0.32927 35 26 2 NaN NaN NaN NaN 0 NaN NaN 0 43773 3276 14542 2078 2081 -0.02351782896471377 DFRPISLMNTD 11 Unmodified _DFRPISLMNTD_ 0 0 0 L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.879939 1307.61799 -0.15066 -6.5819E-05 -0.057439 -2.5094E-05 -0.2081 -9.0913E-05 436.87934148768795 101.14 0.10065 104.65 104.58 104.68 3.5063 -0.022816 0.00014058 NaN 0.32927 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 52994 3277 14542 2078 2081 -0.02351782896471377 DFRPISLMNTD 11 Unmodified _DFRPISLMNTD_ 0 0 0 L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|20|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.879939 1307.61799 0.14044 6.1356E-05 0.049951 2.1823E-05 0.19039 8.3179E-05 437.2148651871511 100.85 0.11246 104.66 104.59 104.7 3.8153 -0.0062811 0.00028133 NaN 0.32927 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 67061 3278 14542 2078 2081 -0.02351782896471377 DFSEHRRY 8 Unmodified _DFSEHRRY_ 0 0 0 nc|ENSG00000166261|O95125-2|ZNF202;ENSG00000166261|ENST00000530393|ZNF202 nc|ENSG00000166261|O95125-2|ZNF202 nc|ENSG00000166261|O95125-2|ZNF202 MSMS UPN47_class_I_Rep_2 3 555.261962890625 2 555.259779 1108.50501 NaN NaN NaN NaN NaN NaN NaN 63.042 1 66.298 65.798 66.798 3.2558 0 0 0 0.40157 1 14930 14930 7.2892 0.56607 1 3279 4227 2079 2082 4080 4080 -0.04490670507470895 DFSEHRRY 8 Unmodified _DFSEHRRY_ 0 0 0 nc|ENSG00000166261|O95125-2|ZNF202;ENSG00000166261|ENST00000530393|ZNF202 nc|ENSG00000166261|O95125-2|ZNF202 nc|ENSG00000166261|O95125-2|ZNF202 MSMS UPN47_class_I_Rep_3 4 555.2626342773438 2 555.259779 1108.50501 NaN NaN NaN NaN NaN NaN NaN 63.012 1 66.182 65.682 66.682 3.1698 0 0 0 0.40157 1 14979 14979 7.2892 1.0834 1 3280 4227 2079 2082 4081 4081 -0.04490670507470895 DFSPYNIKYQ 10 Unmodified _DFSPYNIKYQ_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS UPN48_class_I_Rep_1 5 637.8054809570312 2 637.806228 1273.5979 0.50086 0.00031945 -0.2602 -0.00016596 0.24066 0.0001535 637.8059579876026 67.563 0.58896 71.014 70.717 71.306 3.4516 104 43 3 0 0 0 0.54078 1 15462 15462 6.7232 0.09279 1 333050 3281 1199 2080 2083 4082 4082 -0.027952105647727876 DFSPYNIKYQ 10 Unmodified _DFSPYNIKYQ_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS UPN48_class_I_Rep_3 7 637.805908203125 2 637.806228 1273.5979 0.67923 0.00043322 -0.27418 -0.00017487 0.40505 0.00025834 637.8059807153318 67.323 0.66318 70.831 70.471 71.134 3.5077 112 55 3 0 0 0 0.54078 3 15271 15271;15312;15353 6.7232 3.7279 1 245680 3282 1199 2080 2083 4083;4084;4085 4083 -0.027952105647727876 DFSVKTASL 9 Unmodified _DFSVKTASL_ 0 0 0 REV__ENSG00000174417|ENST00000518632|TRHR REV__ENSG00000174417|ENST00000518632|TRHR MSMS UPN47_class_I_Rep_3 4 484.2585144042969 2 484.258382 966.502212 NaN NaN NaN NaN NaN NaN NaN 20.011 1 23.362 22.862 23.862 3.3514 0 0 0 0.38916 1 1982 1982 3.2813 0.70383 1 + 3283 20521 2081 2084 4086 4086 0.017620613149915698 DFTLSHSWV 9 Unmodified _DFTLSHSWV_ 0 0 0 REV__ENST00000488520.5_1_3:49348069-49355772:-|nuORF REV__ENST00000488520.5_1_3:49348069-49355772:-|nuORF MSMS UPN48_class_I_Rep_1 5 546.2594604492188 2 546.261456 1090.50836 NaN NaN NaN NaN NaN NaN NaN 26.712 1 30.275 29.775 30.775 3.5629 0 0 0 0.38478 1 3326 3326 4.3292 0.73274 1 + 3284 22614 2082 2085 4087 4087 -0.03327420453479135 DFTRNRSY 8 Unmodified _DFTRNRSY_ 0 0 0 REV__ENST00000489038.5_1_7:33016023-33032371:+|nuORF REV__ENST00000489038.5_1_7:33016023-33032371:+|nuORF MSMS UPN47_class_I_Rep_2 3 529.7536010742188 2 529.75433 1057.49411 NaN NaN NaN NaN NaN NaN NaN 29.123 1 32.616 32.116 33.116 3.4923 0 0 0 0.40472 1 4619 4619 4.3292 2.0265 1 + 3285 18754 2083 2086 4088 4088 -0.03234072881764405 DFVKVILE 8 Unmodified _DFVKVILE_ 0 0 0 REV__HERVL40-int_dup12|chr1:50944262-50946073:-|3.779550568521216|0.0317905816218364|6.89|151.0|12|1|sense REV__HERVL40-int_dup12|chr1:50944262-50946073:-|3.779550568521216|0.0317905816218364|6.89|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 481.7806701660156 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 21.433 1 25.083 24.583 25.583 3.6506 0 0 0 0.40292 1 2324 2324 6.7232 0 1 + 3286 23915 2084 2087 4089 4089 0.06612126217089553 DFVQTFDRV 9 Unmodified _DFVQTFDRV_ 0 0 0 REV__ENST00000595288.5_1_19:7687207-7690948:-|nuORF REV__ENST00000595288.5_1_19:7687207-7690948:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 563.7797241210938 2 563.780013 1125.54547 0.33441 0.00018853 -0.44986 -0.00025362 -0.11545 -6.5091E-05 563.7795166216101 54.54 0.98517 58.041 57.673 58.658 3.5014 89 57 2 0 0 0 0.33908 2 12316 12316;12358 11.495 2.1116 1 159980 + 3287 17872 2085 2088 4090;4091 4090 -0.012277489077177961 DFVQTFDRV 9 Unmodified _DFVQTFDRV_ 0 0 0 REV__ENST00000595288.5_1_19:7687207-7690948:-|nuORF REV__ENST00000595288.5_1_19:7687207-7690948:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 563.7800903320312 2 563.780013 1125.54547 0.51757 0.00029179 -0.46899 -0.00026441 0.048578 2.7388E-05 563.7796009788046 54.867 0.88346 58.186 57.83 58.713 3.3187 84 48 2 0 0 0 0.2924 1 12457 12457 14.405 0.49933 1 160250 + 3288 17872 2085 2088 4092 4092 -0.012277489077177961 DFVQTFDRV 9 Unmodified _DFVQTFDRV_ 0 0 0 REV__ENST00000595288.5_1_19:7687207-7690948:-|nuORF REV__ENST00000595288.5_1_19:7687207-7690948:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 563.7797241210938 2 563.780013 1125.54547 0.4337 0.00024451 -0.24577 -0.00013856 0.18793 0.00010595 563.7796327241941 55.001 0.95593 58.179 57.797 58.753 3.1779 111 55 3 0 0 0 0.26468 2 12528 12528;12611 16.149 3.1066 1 129930 + 3289 17872 2085 2088 4093;4094 4093 -0.012277489077177961 DFVSKKVF 8 Unmodified _DFVSKKVF_ 0 0 0 REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|132|3|anti-sense REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|132|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 485.27374267578125 2 485.273835 968.533118 0.13436 6.5203E-05 -0.59949 -0.00029092 -0.46512 -0.00022571 485.27349590754574 108.78 0.45966 112.41 112.26 112.72 3.6321 81 52 2 0 0 0 0.82752 1 26353 26353 7.2892 2.0586 1 6486600 + 3290 26551 2086 2089 4095 4095 0.04759259419904538 DFVYMVAW 8 Unmodified _DFVYMVAW_ 0 0 0 L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7380981445312 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 119.32 1 119.32 118.82 119.82 0 0 0 0 0.40604 1 29653 29653 2.5775 0 1 3291 12719 2087 2090 4096 4096 -0.050563622402250985 DFVYMVAW 8 Unmodified _DFVYMVAW_ 0 0 0 L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_2 3 515.76904296875 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 49.315 1 52.662 52.162 53.162 3.3465 0 0 0 0.40581 1 10741 10741 2.8892 0 1 3292 12719 2087 2090 4097 4097 -0.050563622402250985 DFVYMVAW 8 Unmodified _DFVYMVAW_ 0 0 0 L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|54|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7381591796875 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 21.938 1 25.584 25.084 26.084 3.6459 0 0 0 0.40738 1 2157 2157 0.79363 0 1 3293 12719 2087 2090 4098 4098 -0.050563622402250985 DFYEGTHNY 9 Unmodified _DFYEGTHNY_ 0 0 0 REV__L1M5_dup40885|chr13:21008590-21008947:+|1.0237915363195478|0.0070017354876487|7.19|151.0|4|1|sense REV__L1M5_dup40885|chr13:21008590-21008947:+|1.0237915363195478|0.0070017354876487|7.19|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 573.2293090820312 2 573.230353 1144.44615 NaN NaN NaN NaN NaN NaN NaN 76.894 1 80.226 79.726 80.726 3.3315 0 0 0 0.38784 1 19049 19049 3.5965 1.2938 1 + 3294 24671 2088 2091 4099 4099 -0.12029191592478128 DFYKKLDQD 9 Unmodified _DFYKKLDQD_ 0 0 0 REV__nc|ENSG00000164885|Q00535-2|CDK5 REV__nc|ENSG00000164885|Q00535-2|CDK5 MULTI-MSMS UPN47_class_I_Rep_1 2 586.2849731445312 2 586.285128 1170.5557 0.37718 0.00022113 -0.37417 -0.00021937 0.0030128 1.7664E-06 586.2847764504778 73.576 0.67221 76.962 76.556 77.228 3.3861 115 61 3 0 0 0 0.47197 1 17977 17977 3.5965 0.31518 1 260380 + 3295 20091 2089 2092 4100 4100 -0.02275185973144289 DFYPLFFF 8 Unmodified _DFYPLFFF_ 0 0 0 REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|148|2|anti-sense REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|148|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.263427734375 2 548.262936 1094.51132 0.095054 5.2115E-05 -0.34212 -0.00018757 -0.24707 -0.00013546 548.2626510440697 42.832 0.72803 46.071 45.701 46.429 3.2394 73 48 2 0 0 0 0.82752 1 8765 8765 2.8892 0 1 84345 + 3296 25278 2090 2093 4101 4101 -0.032155453286804914 DFYSFRPYLT 10 Unmodified _DFYSFRPYLT_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.87939453125 3 436.880156 1307.61864 -0.048416 -2.1152E-05 -0.058749 -2.5666E-05 -0.10717 -4.6818E-05 437.21504242275427 100.73 0.14169 104.34 104.27 104.41 3.6084 36 20 2 0 0 0 0.56454 1 24322 24322 0.62683 0.17231 1 58463 3297 15289 2091 2094 4102 4102 -0.022866201851002188 DFYSFRPYLT 10 Unmodified _DFYSFRPYLT_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.880156 1307.61864 -0.15048 -6.5742E-05 -0.14991 -6.5492E-05 -0.30039 -0.00013123 436.8794492534677 100.4 0.17293 103.91 103.85 104.03 3.5063 -0.17406 -0.00021159 NaN 0.62683 38 25 2 NaN NaN NaN NaN 0 NaN NaN 0 52880 3298 15289 2091 2094 -0.022866201851002188 DFYSFRPYLT 10 Unmodified _DFYSFRPYLT_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|67|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.880156 1307.61864 -0.32361 -0.00014138 0.51503 0.00022501 0.19142 8.3627E-05 437.2154233367489 100.53 0.13995 104 103.94 104.08 3.4671 -0.080865 0.0006599 NaN 0.62683 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 50465 3299 15289 2091 2094 -0.022866201851002188 DGAHLTWEP 9 Unmodified _DGAHLTWEP_ 0 0 0 nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1 nc|ENSG00000172534|P51610-2|HCFC1 nc|ENSG00000172534|P51610-2|HCFC1 MSMS UPN48_class_I_Rep_2 6 513.2380981445312 2 513.237981 1024.46141 NaN NaN NaN NaN NaN NaN NaN 46.222 1 49.973 49.473 50.473 3.7506 0 0 0 0.38299 1 9008 9008 4.756 0 1 3300 4580 2092 2095 4103 4103 -0.049842800046235425 DGAHSPFPY 9 Unmodified _DGAHSPFPY_ 0 0 0 L1PBb_dup273|chr17:6913648-6915975:+|1.8152526970923728|0.3228224963780465|2.49|151.0|65|1|anti-sense L1PBb_dup273|chr17:6913648-6915975:+|1.8152526970923728|0.3228224963780465|2.49|151.0|65|1|anti-sense L1PBb_dup273|chr17:6913648-6915975:+|1.8152526970923728|0.3228224963780465|2.49|151.0|65|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7477722167969 2 495.719424 989.424296 NaN NaN NaN NaN NaN NaN NaN 54.451 1 57.769 57.269 58.269 3.3187 0 0 0 0.39428 1 12311 12311 2.0598 0.21551 1 3301 15409 2093 2096 4104 4104 -0.07083951550384882 DGARWLHL 8 Unmodified _DGARWLHL_ 0 0 0 REV__ENST00000546226.5_1_11:118963098-118963308:+|nuORF REV__ENST00000546226.5_1_11:118963098-118963308:+|nuORF MSMS UPN47_class_I_Rep_3 4 484.2584228515625 2 484.259051 966.503549 NaN NaN NaN NaN NaN NaN NaN 19.709 1 23.06 22.56 23.56 3.3514 0 0 0 0.40604 1 1893 1893 2.5775 0.27475 1 + 3302 22936 2094 2097 4105 4105 0.018957401944248886 DGCCCCCAE 9 Unmodified _DGCCCCCAE_ 0 0 0 REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS UPN46_class_I_Rep_3 1 453.76904296875 2 453.599577 905.184601 NaN NaN NaN NaN NaN NaN NaN 67.058 1 67.058 66.558 67.558 0 0 0 0 0.4007 1 15247 15247 0.52476 0.52476 1 + 3303 19130 2095 2098 4106 4106 -0.27178420142899995 DGDDDDEEEDE 11 Unmodified _DGDDDDEEEDE_ 0 0 0 REV__nc|ENSG00000130939|O95155-4|UBE4B REV__nc|ENSG00000130939|O95155-4|UBE4B MSMS UPN47_class_I_Rep_2 3 641.6915283203125 2 641.689306 1281.36406 NaN NaN NaN NaN NaN NaN NaN 33.776 1 37.216 36.716 37.716 3.4398 0 0 0 0.38417 1 6025 6025 0.30703 0.30703 1 + 3304 31977 2096 2099 4107 4107 -0.26536848043383543 DGEDRLGQCGD 11 Unmodified _DGEDRLGQCGD_ 0 0 0 REV__L1MB3_dup12867|chr14:21467545-21468239:+|1.2593445444303288|0.2933845567208518|2.1|151.0|6|1|sense REV__L1MB3_dup12867|chr14:21467545-21468239:+|1.2593445444303288|0.2933845567208518|2.1|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 582.733154296875 2 582.732934 1163.45132 NaN NaN NaN NaN NaN NaN NaN 112.71 1 116.38 115.88 116.88 3.6648 0 0 0 0.38417 1 26867 26867 1.0715 0.27783 1 + 3305 25816 2097 2100 4108 4108 -0.12387255792168617 DGEDYCTGGNN 11 Unmodified _DGEDYCTGGNN_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MSMS UPN48_class_I_Rep_3 7 572.3102416992188 2 572.696017 1143.37748 NaN NaN NaN NaN NaN NaN NaN 32.38 1 36.069 35.569 36.569 3.6896 0 0 0 0.38417 1 4914 4914 0.30703 0.30703 1 + 3306 18158 2098 2101 4109 4109 -0.1884722395445806 DGFWRKAP 8 Unmodified _DGFWRKAP_ 0 0 0 ENST00000523749.5_1_8:22049603-22049767:+|nuORF;ENST00000523457.5_1_8:22037227-22049699:+|nuORF;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;nc|ENSG00000168487|P13497-6|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENSG00000168487|ENST00000306385|BMP1 ENST00000523749.5_1_8:22049603-22049767:+|nuORF ENST00000523749.5_1_8:22049603-22049767:+|nuORF MSMS UPN46_class_I_Rep_3 1 488.75347900390625 2 488.753601 975.49265 NaN NaN NaN NaN NaN NaN NaN 91.845 1 91.845 91.345 92.345 0 0 0 0 0.40746 1 22202 22202 0.69038 0 1 3307 4374 2099 2102 4110 4110 0.0039233782013070595 DGHCDFDENG 10 Unmodified _DGHCDFDENG_ 0 0 0 REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF MSMS UPN47_class_I_Rep_1 2 554.6857299804688 2 554.685452 1107.35635 NaN NaN NaN NaN NaN NaN NaN 23.706 1 27.436 26.936 27.936 3.7298 0 0 0 0.53105 1 2977 2977 3.5965 1.5367 1 + 3308 22336 2100 2103 4111 4111 -0.19303189263359855 DGHCDFDENG 10 Unmodified _DGHCDFDENG_ 0 0 0 REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF MSMS UPN47_class_I_Rep_2 3 554.2798461914062 2 554.685452 1107.35635 NaN NaN NaN NaN NaN NaN NaN 22.606 1 26.051 25.551 26.551 3.4447 0 0 0 0.53105 1 2710 2710 0 0 1 + 3309 22336 2100 2103 4112 4112 -0.19303189263359855 DGHCDFDENG 10 Unmodified _DGHCDFDENG_ 0 0 0 REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF MSMS UPN47_class_I_Rep_2 3 554.6866455078125 2 554.685452 1107.35635 NaN NaN NaN NaN NaN NaN NaN 25.557 1 29.04 28.54 29.54 3.483 0 0 0 0.53105 1 3566 3566 1.4819 0.79152 1 + 3310 22336 2100 2103 4113 4113 -0.19303189263359855 DGHCDFDENG 10 Unmodified _DGHCDFDENG_ 0 0 0 REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF MSMS UPN47_class_I_Rep_3 4 554.685791015625 2 554.685452 1107.35635 NaN NaN NaN NaN NaN NaN NaN 49.568 1 52.795 52.295 53.295 3.2262 0 0 0 0.53105 1 10875 10875 0 0 1 + 3311 22336 2100 2103 4114 4114 -0.19303189263359855 DGHCDFDENG 10 Unmodified _DGHCDFDENG_ 0 0 0 REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF MSMS UPN48_class_I_Rep_1 5 554.685546875 2 554.685452 1107.35635 NaN NaN NaN NaN NaN NaN NaN 19.147 1 22.685 22.185 23.185 3.5378 0 0 0 0.53105 1 1403 1403 0 0 1 + 3312 22336 2100 2103 4115 4115 -0.19303189263359855 DGHHKKHKK 9 Unmodified _DGHHKKHKK_ 0 0 0 REV__nc|ENSG00000197579|Q9NS56-2|TOPORS REV__nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-SECPEP UPN48_class_I_Rep_2 6 558.31591796875 2 557.815056 1113.61556 0.41306 0.00023041 1.5149 0.00084506 1.928 0.0010755 557.8162588020394 45.157 0.4308 48.915 48.638 49.069 3.7579 41 32 2 0 0 0 0.12462 1 8664 8664 1.8442 0.19162 1 149260 + 3313 21088 2101 2104 4116 4116 0.06329594271414862 DGKKDLPGTY 10 Unmodified _DGKKDLPGTY_ 0 0 0 L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|9|1|sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|9|1|sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.2788696289062 2 547.279846 1092.54514 -0.057357 -3.139E-05 0.16951 9.2769E-05 0.11215 6.1378E-05 547.279873314281 20.546 0.7223 24.19 23.842 24.564 3.6436 133 75 2 0 0 0 0.56354 1 2159 2159 1.3295 0 1 94780 3314 11918 2102 2105 4117 4117 0.0025683137246232945 DGKKKISTV 9 Unmodified _DGKKKISTV_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000559475.5_1_15:40329218-40331146:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.2947998046875 2 488.295299 974.576045 -0.36448 -0.00017797 -0.18026 -8.802E-05 -0.54474 -0.00026599 488.29508279580705 13.38 0.52675 16.837 16.727 17.254 3.457 127 62 3 0 0 0 0.079935 1 308 308 38.615 19.253 1 370990 3315 3167 2103 2106 4118 4118 0.087740294773198 DGKKKISTV 9 Unmodified _DGKKKISTV_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000559475.5_1_15:40329218-40331146:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 488.29486083984375 2 488.295299 974.576045 -0.70493 -0.00034422 0.068796 3.3593E-05 -0.63614 -0.00031062 488.29525631273486 13.465 0.57153 16.839 16.729 17.301 3.3734 154 67 4 0 0 0 0.21414 1 317 317 19.362 4.5237 1 319350 3316 3167 2103 2106 4119 4119 0.087740294773198 DGKKKISTV 9 Unmodified _DGKKKISTV_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000559475.5_1_15:40329218-40331146:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 488.295299 974.576045 -0.12948 -6.3225E-05 -0.45324 -0.00022131 -0.58272 -0.00028454 488.2949573186475 13.431 0.50674 16.819 16.709 17.216 3.388 -0.012575 -0.00026804 NaN 38.615 134 60 4 NaN NaN NaN NaN 0 NaN NaN 0 361590 3317 3167 2103 2106 0.087740294773198 DGKLKVTL 8 Unmodified _DGKLKVTL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS UPN47_class_I_Rep_1 2 437.27398681640625 2 437.273835 872.533118 -0.39475 -0.00017261 0.38013 0.00016622 -0.014622 -6.394E-06 437.2738759422745 35.272 0.80528 38.948 38.615 39.42 3.6762 111 55 3 0 0 0 0.82752 4 6397 6397;6434;6485;6531 41.956 7.5538 1 215390 3318 4555 2104 2107 4120;4121;4122;4123 4120 0.0917525941989652 DGKLKVTL 8 Unmodified _DGKLKVTL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 437.273835 872.533118 -0.73276 -0.00032042 0.71974 0.00031473 -0.013017 -5.692E-06 437.27401385363504 35.507 0.79689 38.918 38.647 39.444 3.4114 -0.028832 9.2794E-05 NaN 41.956 102 52 3 NaN NaN NaN NaN 0 NaN NaN 0 192670 3319 4555 2104 2107 0.0917525941989652 DGKLKVTL 8 Unmodified _DGKLKVTL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 437.273835 872.533118 -0.92208 -0.0004032 0.79676 0.0003484 -0.12532 -5.48E-05 437.27406959271235 35.72 0.80953 38.975 38.656 39.466 3.2547 0.027848 0.00016015 NaN 41.956 102 53 3 NaN NaN NaN NaN 0 NaN NaN 0 213570 3320 4555 2104 2107 0.0917525941989652 DGKRPLPNNC 10 Unmodified _DGKRPLPNNC_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|300|3|anti-sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|300|3|anti-sense MSMS UPN47_class_I_Rep_3 4 557.2778930664062 2 557.277115 1112.53968 NaN NaN NaN NaN NaN NaN NaN 43.123 1 46.365 45.865 46.865 3.2419 0 0 0 0.53105 1 8917 8917 1.1933 0 1 + 3321 23313 2105 2108 4124 4124 -0.01209170691026884 DGKYSQVL 8 Unmodified _DGKYSQVL_ 0 0 0 ENST00000407538.2_1_6:141243712-141243922:-|nuORF;ENST00000445477.1_1_22:31955550-31955922:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000407538.2_1_6:141243712-141243922:-|nuORF ENST00000407538.2_1_6:141243712-141243922:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 455.2370300292969 2 455.23745 908.460347 -0.35523 -0.00016171 -0.0072193 -3.2865E-06 -0.36245 -0.000165 455.23736299258445 35.187 0.68419 38.863 38.615 39.299 3.6762 105 47 3 0 0 0 0.82752 3 6486 6407;6444;6486 37.974 5.6685 1 259030 3322 5678 2106 2109 4125;4126;4127 4127 0.002455056264693667 DGKYSQVL 8 Unmodified _DGKYSQVL_ 0 0 0 ENST00000407538.2_1_6:141243712-141243922:-|nuORF;ENST00000445477.1_1_22:31955550-31955922:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000407538.2_1_6:141243712-141243922:-|nuORF ENST00000407538.2_1_6:141243712-141243922:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 455.23724365234375 2 455.23745 908.460347 -0.50059 -0.00022789 0.18132 8.2543E-05 -0.31927 -0.00014535 455.2374362690604 35.437 0.67593 38.848 38.579 39.255 3.4114 91 41 3 0 0 0 0.82752 2 6518 6518;6560 29.082 8.3718 1 231650 3323 5678 2106 2109 4128;4129 4128 0.002455056264693667 DGKYSQVL 8 Unmodified _DGKYSQVL_ 0 0 0 ENST00000407538.2_1_6:141243712-141243922:-|nuORF;ENST00000445477.1_1_22:31955550-31955922:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000407538.2_1_6:141243712-141243922:-|nuORF ENST00000407538.2_1_6:141243712-141243922:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 455.2374267578125 2 455.23745 908.460347 -0.72965 -0.00033216 0.21873 9.9572E-05 -0.51092 -0.00023259 455.2374823091929 35.599 0.78651 38.854 38.521 39.308 3.2547 112 52 3 0 0 0 0.82752 1 6587 6587 22.736 3.4793 1 252380 3324 5678 2106 2109 4130 4130 0.002455056264693667 DGLLLGTIL 9 Unmodified _DGLLLGTIL_ 0 0 0 REV__ENST00000453654.6_3_7:137073903-137074059:-|nuORF REV__ENST00000453654.6_3_7:137073903-137074059:-|nuORF MSMS UPN47_class_I_Rep_3 4 457.7904052734375 2 457.781493 913.548434 NaN NaN NaN NaN NaN NaN NaN 55.781 1 58.959 58.459 59.459 3.1779 0 0 0 0.37476 1 12774 12774 6.7232 0 1 + 3325 22397 2107 2110 4131 4131 0.08820126217108282 DGLLRVLTV 9 Unmodified _DGLLRVLTV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 493.30572509765625 2 493.305667 984.596781 0.13775 6.7951E-05 0.10424 5.1423E-05 0.24199 0.00011937 493.30562918576015 71.603 0.18483 74.978 74.833 75.018 3.3751 18 13 2 0 0 0 0.279 1 17467 17467 15.248 5.8654 1 44953 3326 4149 2108 2111 4132 4132 0.10386619856990364 DGMHAHHF 8 Unmodified _DGMHAHHF_ 0 0 0 REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 476.4377136230469 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 39.347 1 42.852 42.352 43.352 3.5048 0 0 0 0.40738 1 6936 6936 0.79363 0 1 + 3327 24201 2109 2112 4133 4133 -0.09545625159603333 DGNPRRPR 8 Unmodified _DGNPRRPR_ 0 0 0 REV__nc|ENSG00000132470|P16144-4|ITGB4 REV__nc|ENSG00000132470|P16144-4|ITGB4 MSMS UPN48_class_I_Rep_3 7 484.26092529296875 2 484.262656 966.51076 NaN NaN NaN NaN NaN NaN NaN 25.78 1 29.546 29.046 30.046 3.7663 0 0 0 0.40753 1 3183 3183 0.6015 0.6015 1 + 3328 19021 2110 2113 4134 4134 0.02616472794852598 DGNRVLVTV 9 Unmodified _DGNRVLVTV_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.7767028808594 2 486.777274 971.539994 -0.38738 -0.00018857 0.091495 4.4537E-05 -0.29588 -0.00014403 486.77727828527213 35.564 1.007 38.819 38.467 39.474 3.2547 165 70 3 0 0 0 0.40701 1 6518 6518 7.609 1.4032 1 680830 3329 1065 2111 2114 4135 4135 0.05308572300475589 DGPIEGLEQC 10 Unmodified _DGPIEGLEQC_ 0 0 0 Tigger4_dup832|chr9:15468143-15468533:-|1.3545959068576845|0.4003739440926885|1.76|151.0|2|1|sense Tigger4_dup832|chr9:15468143-15468533:-|1.3545959068576845|0.4003739440926885|1.76|151.0|2|1|sense Tigger4_dup832|chr9:15468143-15468533:-|1.3545959068576845|0.4003739440926885|1.76|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 530.734375 2 530.734414 1059.45428 NaN NaN NaN NaN NaN NaN NaN 24.2 1 27.969 27.469 28.469 3.769 0 0 0 0.53105 1 2767 2767 1.3295 0.5359 1 3330 33427 2112 2115 4136 4136 -0.0730738066736194 DGPKQFLFT 9 Unmodified _DGPKQFLFT_ 0 0 0 REV__ENST00000556880.5_1_14:77772649-77773022:-|nuORF REV__ENST00000556880.5_1_14:77772649-77773022:-|nuORF MSMS UPN47_class_I_Rep_1 2 526.7733154296875 2 526.7742 1051.53385 NaN NaN NaN NaN NaN NaN NaN 26.725 1 30.491 29.991 30.991 3.7662 0 0 0 0.39598 1 3866 3866 1.6526 0 1 + 3331 17565 2113 2116 4137 4137 0.01014054068969017 DGPYLAPIE 9 Unmodified _DGPYLAPIE_ 0 0 0 REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 487.744873046875 2 487.745108 973.475663 0.29514 0.00014395 -1.5168 -0.00073981 -1.2217 -0.00059586 487.7449640939532 69.897 0.2803 73.41 73.36 73.641 3.5128 29 21 2 0 0 0 0.46869 1 16194 16194 3.9444 0 1 67692 + 3332 19504 2114 2117 4138 4138 -0.01213627576350973 DGQGWGCDMP 10 Unmodified _DGQGWGCDMP_ 0 0 0 REV__MER1A_dup2179|chr11:73129276-73129808:+|1.032282572902376|0.0048533013932844|7.73|151.0|18|2|anti-sense REV__MER1A_dup2179|chr11:73129276-73129808:+|1.032282572902376|0.0048533013932844|7.73|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_2 6 533.1908569335938 2 533.191859 1064.36917 NaN NaN NaN NaN NaN NaN NaN 96.221 1 100 99.501 100.5 3.7804 0 0 0 0.53105 1 22854 22854 1.6526 0.85899 1 + 3333 31121 2115 2118 4139 4139 -0.1604444940483063 DGRHDLQDQLR 11 Unmodified _DGRHDLQDQLR_ 0 0 0 REV__nc|ENSG00000276045|Q96D31-2|ORAI1 REV__nc|ENSG00000276045|Q96D31-2|ORAI1 MSMS UPN47_class_I_Rep_1 2 451.24810791015625 3 451.560368 1351.65927 NaN NaN NaN NaN NaN NaN NaN 32.662 1 36.375 35.875 36.875 3.7131 0 0 0 0.38417 1 5649 5649 1.1098 0.48293 1 + 3334 21436 2116 2119 4140 4140 -0.0024888581278901256 DGRQVVVTV 9 Unmodified _DGRQVVVTV_ 0 0 0 L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|36|2|sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|36|2|sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 486.7770080566406 2 486.777274 971.539994 -0.28733 -0.00013987 0.08856 4.3109E-05 -0.19877 -9.6756E-05 486.77726942130147 35.145 0.83496 38.821 38.464 39.299 3.6762 163 60 4 0 0 0 0.40701 1 6540 6540 7.609 0 1 662440 3335 9582 2117 2120 4141 4141 0.05308572300475589 DGRVEHRVE 9 Unmodified _DGRVEHRVE_ 0 0 0 REV__THE1D-int_dup938|chr6:15535660-15537138:+|1.538021828031697|0.1662505959981086|3.21|151.0|12|1|sense REV__THE1D-int_dup938|chr6:15535660-15537138:+|1.538021828031697|0.1662505959981086|3.21|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 548.7796630859375 2 548.778336 1095.54212 NaN NaN NaN NaN NaN NaN NaN 39.73 1 42.968 42.468 43.468 3.238 0 0 0 0.25702 1 7882 7882 13.042 0.80181 1 + 3336 32314 2118 2121 4142 4142 -0.0018299896171356522 DGSPHILLLTL 11 Unmodified _DGSPHILLLTL_ 0 0 0 REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|27|1|anti-sense REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_3 7 589.8448486328125 2 589.842613 1177.67067 NaN NaN NaN NaN NaN NaN NaN 97.092 1 101 100.5 101.5 3.9084 0 0 0 0.38417 1 23017 23017 1.1933 0.50296 1 + 3337 28331 2119 2122 4143 4143 0.08894543228689145 DGVHVVFGL 9 Unmodified _DGVHVVFGL_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR MSMS UPN48_class_I_Rep_2 6 471.75384521484375 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 25.692 1 29.326 28.826 29.826 3.6332 0 0 0 0.38299 1 3162 3162 4.756 0.81161 1 3338 2094 2120 2123 4144 4144 0.023978022430469537 DGVHVVFGL 9 Unmodified _DGVHVVFGL_ 0 0 0 ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR ENSG00000114857|ENST00000232978|NKTR MSMS UPN48_class_I_Rep_3 7 471.7535705566406 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 25.532 1 29.301 28.801 29.801 3.769 0 0 0 0.38299 1 3118 3118 4.756 2.4533 1 3339 2094 2120 2123 4145 4145 0.023978022430469537 DGVILSSFKCH 11 Unmodified _DGVILSSFKCH_ 0 0 0 REV__L1MC5_dup10037|chr11:43475801-43476407:+|3.826748992370477|0.1069808508841545|5.16|151.0|22|1|anti-sense REV__L1MC5_dup10037|chr11:43475801-43476407:+|3.826748992370477|0.1069808508841545|5.16|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_3 4 603.30224609375 2 603.302798 1204.59104 NaN NaN NaN NaN NaN NaN NaN 32.18 1 35.466 34.966 35.966 3.2867 0 0 0 0.38417 1 5581 5581 1.1933 0.12188 1 + 3340 27046 2121 2124 4146 4146 -0.0030684671696690202 DGYDDCGD 8 Unmodified _DGYDDCGD_ 0 0 0 nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN;ENST00000502726.5_1_4:47685742-47840047:-|nuORF;ENST00000503821.5_1_4:47663725-47840047:-|nuORF nc|ENSG00000145244|Q9Y5Q5-2|CORIN nc|ENSG00000145244|Q9Y5Q5-2|CORIN MSMS UPN46_class_I_Rep_3 1 430.2561950683594 2 430.124165 858.233777 NaN NaN NaN NaN NaN NaN NaN 40.089 1 40.089 39.589 40.589 0 0 0 0 0.40798 1 7759 7759 0 0 1 3341 3389 2122 2125 4147 4147 -0.2010102599477932 DGYSREFFV 9 Unmodified _DGYSREFFV_ 0 0 0 REV__ENSG00000071575|ENST00000155926|TRIB2 REV__ENSG00000071575|ENST00000155926|TRIB2 MSMS UPN48_class_I_Rep_2 6 559.8196411132812 2 560.258914 1118.50327 NaN NaN NaN NaN NaN NaN NaN 42.471 1 46.229 45.729 46.729 3.7579 0 0 0 0.39428 1 7866 7866 2.0598 0.21551 1 + 3342 17815 2123 2126 4148 4148 -0.051237243160812795 DHAQQNLYR 9 Unmodified _DHAQQNLYR_ 0 0 0 ENSG00000197123|ENST00000421025|ZNF679;ENSG00000223614|ENST00000429565|ZNF735;ENSG00000182111|ENST00000420713|ZNF716 ENSG00000197123|ENST00000421025|ZNF679 ENSG00000197123|ENST00000421025|ZNF679 MSMS UPN47_class_I_Rep_1 2 572.7677612304688 2 572.778336 1143.54212 NaN NaN NaN NaN NaN NaN NaN 39.409 1 43.075 42.575 43.575 3.6668 0 0 0 0.38639 1 7704 7704 3.9444 0 1 3343 4934 2124 2127 4149 4149 -0.02390998961709556 DHCAMALGGI 10 Unmodified _DHCAMALGGI_ 0 0 0 REV__ENSG00000163191|ENST00000271638|S100A11 REV__ENSG00000163191|ENST00000271638|S100A11 MSMS UPN47_class_I_Rep_2 3 494.22467041015625 2 494.222962 986.431372 NaN NaN NaN NaN NaN NaN NaN 40.508 1 43.879 43.379 44.379 3.3712 0 0 0 0.53105 1 8073 8073 1.8442 1.0506 1 + 3344 19970 2125 2128 4150 4150 -0.062386782657995354 DHDDEVASLAS 11 Unmodified _DHDDEVASLAS_ 0 0 0 ENST00000576972.5_1_16:67914666-67915321:+|nuORF;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4 ENST00000576972.5_1_16:67914666-67915321:+|nuORF ENST00000576972.5_1_16:67914666-67915321:+|nuORF MSMS UPN47_class_I_Rep_1 2 579.7461547851562 2 579.749107 1157.48366 NaN NaN NaN NaN NaN NaN NaN 52.073 1 55.631 55.131 56.131 3.5585 0 0 0 0.38417 1 11559 11559 2.7352 0.23671 1 3345 858 2126 2129 4151 4151 -0.08878145117500935 DHDLERLRD 9 Unmodified _DHDLERLRD_ 0 0 0 nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP nc|ENSG00000178104|Q5VU43-6|PDE4DIP nc|ENSG00000178104|Q5VU43-6|PDE4DIP MSMS UPN48_class_I_Rep_1 5 584.788818359375 2 584.788901 1167.56325 NaN NaN NaN NaN NaN NaN NaN 14.118 1 17.633 17.133 18.133 3.5156 0 0 0 0.4007 1 356 356 0.52476 0 1 3346 4811 2127 2130 4152 4152 -0.013830336528826592 DHDNKKFID 9 Unmodified _DHDNKKFID_ 0 0 0 REV__nc|ENSG00000079150|Q9Y680-3|FKBP7 REV__nc|ENSG00000079150|Q9Y680-3|FKBP7 MULTI-MSMS UPN47_class_I_Rep_1 2 566.7766723632812 2 566.275095 1130.53564 0.077999 4.4169E-05 -0.81795 -0.00046319 -0.73996 -0.00041902 566.7766466366959 44.488 0.97787 48.183 47.837 48.815 3.6951 202 67 4 0 0 0 0.46869 2 9239 9239;9319 3.9444 0 1 326880 + 3347 17891 2128 2131 4153;4154 4153 -0.024409369130808045 DHEWCENMES 10 Unmodified _DHEWCENMES_ 0 0 0 nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;ENSG00000176463|ENST00000318445|SLCO3A1 nc|ENSG00000176463|Q9UIG8-4|SLCO3A1 nc|ENSG00000176463|Q9UIG8-4|SLCO3A1 MSMS UPN47_class_I_Rep_1 2 640.2223510742188 2 640.221345 1278.42814 NaN NaN NaN NaN NaN NaN NaN 55.722 1 59.201 58.701 59.701 3.4785 0 0 0 0.53105 1 12670 12670 0.45834 0 1 3348 4762 2129 2132 4155 4155 -0.19994017901149164 DHFSSDVTAAV 11 Unmodified _DHFSSDVTAAV_ 0 0 0 REV__Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|119|2|anti-sense REV__Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|119|2|anti-sense MSMS UPN46_class_I_Rep_3 1 574.7876586914062 2 574.76456 1147.51457 NaN NaN NaN NaN NaN NaN NaN 73.231 1 73.231 72.731 73.731 0 0 0 0 0.38417 1 16967 16967 2.9952 0 1 + 3349 32335 2130 2133 4156 4156 -0.05328947012617391 DHGKFLDCVVR 11 Unmodified _DHGKFLDCVVR_ 0 0 0 nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 nc|ENSG00000157119|Q2TBA0-2|KLHL40 MULTI-MSMS UPN48_class_I_Rep_2 6 645.3284301757812 2 644.826972 1287.63939 0.45781 0.00029521 -0.047383 -3.0554E-05 0.41043 0.00026465 644.8268582462288 49.952 0.64926 53.646 53.272 53.921 3.6946 69 41 2 0 0 0 0.63951 1 10141 10141 4.1895 0.24511 1 208370 3350 3751 2131 2134 4157 4157 0.007076469229104987 DHHFFLWY 8 Unmodified _DHHFFLWY_ 0 0 0 L1MDa_dup6789|chr22:40443301-40444180:+|1.0645929543562112|0.011351938097791|6.55|151.0|29|1|anti-sense L1MDa_dup6789|chr22:40443301-40444180:+|1.0645929543562112|0.011351938097791|6.55|151.0|29|1|anti-sense L1MDa_dup6789|chr22:40443301-40444180:+|1.0645929543562112|0.011351938097791|6.55|151.0|29|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.76513671875 2 582.766709 1163.51886 NaN NaN NaN NaN NaN NaN NaN 54.829 1 58.148 57.648 58.648 3.3187 0 0 0 0.40364 1 12427 12427 5.7604 0.46354 1 3351 12151 2132 2135 4158 4158 -0.05635393008378742 DHHYDRMI 8 Unmodified _DHHYDRMI_ 0 0 0 REV__ENSG00000101349|ENST00000353224|PAK5 REV__ENSG00000101349|ENST00000353224|PAK5 MSMS UPN48_class_I_Rep_1 5 543.7526245117188 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 119.27 1 122.89 122.39 123.39 3.6189 0 0 0 0.40604 1 29108 29108 2.5775 0 1 + 3352 18157 2133 2136 4159 4159 -0.06805415270878257 DHIAEKYQK 9 Unmodified _DHIAEKYQK_ 0 0 0 REV__ENSG00000184905|ENST00000372780|TCEAL2 REV__ENSG00000184905|ENST00000372780|TCEAL2 MSMS UPN47_class_I_Rep_2 3 566.2941284179688 2 566.293288 1130.57202 NaN NaN NaN NaN NaN NaN NaN 28.663 1 32.162 31.662 32.662 3.4986 0 0 0 0.39428 1 4479 4479 2.0598 0 1 + 3353 20834 2134 2137 4160 4160 0.011959399836086959 DHKMDMEYM 9 Unmodified _DHKMDMEYM_ 0 0 0 ENST00000357504.7_1_4:36283341-36292008:+|nuORF ENST00000357504.7_1_4:36283341-36292008:+|nuORF ENST00000357504.7_1_4:36283341-36292008:+|nuORF MSMS UPN46_class_I_Rep_3 1 600.2301635742188 2 600.230127 1198.4457 NaN NaN NaN NaN NaN NaN NaN 112.05 1 112.05 111.55 112.55 0 0 0 0 0.4007 1 27652 27652 0.52476 0 1 3354 6291 2135 2138 4161 4161 -0.14558393899847033 DHLKDNVYR 9 Unmodified _DHLKDNVYR_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MSMS UPN48_class_I_Rep_1 5 580.2960815429688 2 580.296362 1158.57817 NaN NaN NaN NaN NaN NaN NaN 28.602 1 32.159 31.659 32.659 3.5571 0 0 0 0.39518 1 3851 3851 1.8442 0.36234 1 3355 3906 2136 2139 4162 4162 0.005224582151413415 DHLSLYDRL 9 Unmodified _DHLSLYDRL_ 0 0 0 REV__ENSG00000092871.17,RFFL,chr17,-,I8.1,35021782,35025182|26|6.92|3|intron REV__ENSG00000092871.17,RFFL,chr17,-,I8.1,35021782,35025182|26|6.92|3|intron MSMS UPN47_class_I_Rep_1 2 566.2920532226562 2 566.293288 1130.57202 NaN NaN NaN NaN NaN NaN NaN 28.657 1 32.423 31.923 32.923 3.7662 0 0 0 0.38639 1 4444 4444 3.9444 1.4459 1 + 3356 18040 2137 2140 4163 4163 0.011959399836086959 DHLSLYDRL 9 Unmodified _DHLSLYDRL_ 0 0 0 REV__ENSG00000092871.17,RFFL,chr17,-,I8.1,35021782,35025182|26|6.92|3|intron REV__ENSG00000092871.17,RFFL,chr17,-,I8.1,35021782,35025182|26|6.92|3|intron MSMS UPN47_class_I_Rep_2 3 566.2928466796875 2 566.293288 1130.57202 NaN NaN NaN NaN NaN NaN NaN 28.766 1 32.264 31.764 32.764 3.4986 0 0 0 0.38639 1 4510 4510 3.9444 1.6417 1 + 3357 18040 2137 2140 4164 4164 0.011959399836086959 DHMVQGGLR 9 Unmodified _DHMVQGGLR_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MULTI-SECPEP UPN48_class_I_Rep_1 5 507.3265380859375 2 506.753276 1011.492 0.22135 0.00011217 -0.79524 -0.00040299 -0.57389 -0.00029082 506.7527339796602 44.288 0.51049 47.801 47.596 48.106 3.5132 50 36 2 0 0 0 0.12034 1 8431 8431 7.2892 2.0586 1 106920 + 3358 18906 2138 2141 4165 4165 -0.013288248912203926 DHNKVTELP 9 Unmodified _DHNKVTELP_ 0 0 0 ENSG00000136457|ENST00000508540|CHAD ENSG00000136457|ENST00000508540|CHAD ENSG00000136457|ENST00000508540|CHAD MSMS UPN47_class_I_Rep_1 2 526.7733154296875 2 526.772188 1051.52982 NaN NaN NaN NaN NaN NaN NaN 27.234 1 31.001 30.501 31.501 3.7662 0 0 0 0.39036 1 4019 4019 2.9952 1.151 1 3359 2971 2139 2142 4166 4166 0.006119645752278302 DHNVDRTT 8 Unmodified _DHNVDRTT_ 0 0 0 REV__L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|49|1|anti-sense REV__L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_2 3 479.22454833984375 2 479.222862 956.431172 NaN NaN NaN NaN NaN NaN NaN 19.371 1 22.767 22.267 23.267 3.3963 0 0 0 0.40659 1 1813 1813 1.8442 1.0506 1 + 3360 26803 2140 2143 4167 4167 -0.048786386698225215 DHPILKKN 8 Unmodified _DHPILKKN_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|186|3|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|186|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.7823486328125 2 482.782359 963.550165 -0.36625 -0.00017682 -0.49105 -0.00023707 -0.8573 -0.00041389 482.78206355858475 16.165 0.5245 19.678 19.49 20.014 3.5132 115 63 2 0 0 0 0.82752 1 1047 1047 2.3027 0 1 83472 + 3361 29418 2141 2144 4168 4168 0.06693180025695256 DHQLYDSFR 9 Unmodified _DHQLYDSFR_ 0 0 0 REV__L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|84|2|anti-sense REV__L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|84|2|anti-sense MSMS UPN46_class_I_Rep_3 1 590.7716674804688 2 590.772719 1179.53089 NaN NaN NaN NaN NaN NaN NaN 16.843 1 16.843 16.343 17.343 0 0 0 0 0.3967 1 1231 1231 1.4819 0 1 + 3362 27236 2142 2145 4169 4169 -0.05169821055847024 DHRGRHCV 8 Unmodified _DHRGRHCV_ 0 0 0 ENST00000577161.5_1_17:78811748-78857220:+|nuORF ENST00000577161.5_1_17:78811748-78857220:+|nuORF ENST00000577161.5_1_17:78811748-78857220:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 490.7375183105469 2 490.235584 978.456616 -0.27014 -0.00013243 -0.27591 -0.00013526 -0.54605 -0.00026769 490.23535779666327 37.794 0.99261 41.459 41.041 42.034 3.6652 128 75 2 0 0 0 0.82752 1 7124 7124 2.5775 2.5775 1 125040 3363 7533 2143 2146 4170 4170 -0.033474426283760295 DHRLYDPF 8 Unmodified _DHRLYDPF_ 0 0 0 L1MB7_dup21180|chr19:13133424-13134002:-|1.155210963106068|0.153700448780915|2.91|151.0|16|3|sense L1MB7_dup21180|chr19:13133424-13134002:-|1.155210963106068|0.153700448780915|2.91|151.0|16|3|sense L1MB7_dup21180|chr19:13133424-13134002:-|1.155210963106068|0.153700448780915|2.91|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 531.7522583007812 2 531.753798 1061.49304 NaN NaN NaN NaN NaN NaN NaN 35.477 1 38.987 38.487 39.487 3.5101 0 0 0 0.40625 1 5807 5807 2.3027 0 1 3364 10790 2144 2147 4171 4171 -0.03524287250661473 DHWKLTTTN 9 Unmodified _DHWKLTTTN_ 0 0 0 ENST00000597173.5_1_2:145780789-145909247:+|nuORF ENST00000597173.5_1_2:145780789-145909247:+|nuORF ENST00000597173.5_1_2:145780789-145909247:+|nuORF MSMS UPN48_class_I_Rep_3 7 558.2775268554688 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 30.248 1 33.962 33.462 34.462 3.7146 0 0 0 0.38784 1 4339 4339 3.5965 1.098 1 3365 7648 2145 2148 4172 4172 -0.01196633050494711 DHYFLIYS 8 Unmodified _DHYFLIYS_ 0 0 0 L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|79|1|anti-sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|79|1|anti-sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|79|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.2533569335938 2 529.2531 1056.49165 -0.11226 -5.9415E-05 -0.59977 -0.00031743 -0.71203 -0.00037684 529.2528147381255 28.624 0.7219 32.39 32.115 32.837 3.7662 104 62 3 0 0 0 0.82752 1 4498 4498 7.9102 1.187 1 134290 3366 11209 2146 2149 4173 4173 -0.034339213394332546 DIADFFTTR 9 Unmodified _DIADFFTTR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MSMS UPN48_class_I_Rep_1 5 543.26708984375 2 543.266739 1084.51892 0.47099 0.00025587 -0.16405 -8.9123E-05 0.30694 0.00016675 543.2666437533331 67.787 0.10434 71.238 71.178 71.282 3.4517 11 8 3 0 0 0 0.2924 1 15601 15601 14.405 3.5815 1 53389 3367 870 2147 2150 4174 4174 -0.01995437799064348 DIADFFTTR 9 Unmodified _DIADFFTTR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MSMS UPN48_class_I_Rep_1 5 543.2661743164062 2 543.266739 1084.51892 0.46713 0.00025378 0.061239 3.3269E-05 0.52837 0.00028704 543.2664461039822 67.951 0.26286 71.403 71.282 71.545 3.4517 22 17 2 0 0 0 0.17979 1 15645 15645 22.658 13.275 1 91125 3368 870 2147 2150 4175 4175 -0.01995437799064348 DIADFFTTR 9 Unmodified _DIADFFTTR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MSMS UPN48_class_I_Rep_2 6 543.2672119140625 2 543.266739 1084.51892 NaN NaN NaN NaN NaN NaN NaN 67.663 1 71.159 70.659 71.659 3.4964 0 0 0 0.23173 1 15551 15551 14.405 3.5815 1 3369 870 2147 2150 4176 4176 -0.01995437799064348 DIADFFTTR 9 Unmodified _DIADFFTTR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MSMS UPN48_class_I_Rep_3 7 543.266357421875 2 543.266739 1084.51892 0.56067 0.00030459 -0.33346 -0.00018116 0.22721 0.00012343 543.266375902481 67.555 0.06855 71.063 71.013 71.082 3.5077 7 5 2 0 0 0 0.38714 1 15435 15435 8.7454 0.15213 1 64791 3370 870 2147 2150 4177 4177 -0.01995437799064348 DIADFFTTR 9 Unmodified _DIADFFTTR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 543.266739 1084.51892 0.56209 0.00030537 -0.59863 -0.00032521 -0.036535 -1.9848E-05 543.2664474442194 67.633 0.10773 71.141 71.096 71.204 3.5077 -0.048757 -0.00026507 NaN 14.405 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 79146 3371 870 2147 2150 -0.01995437799064348 DIADFFTTR 9 Unmodified _DIADFFTTR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 543.266739 1084.51892 0.56266 0.00030567 -0.14673 -7.9714E-05 0.41593 0.00022596 543.2666104967668 67.785 0.11453 71.293 71.204 71.318 3.5077 -0.055047 -0.00012062 NaN 22.658 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 84938 3372 870 2147 2150 -0.01995437799064348 DIALITTLGG 10 Unmodified _DIALITTLGG_ 0 0 0 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 MSMS UPN46_class_I_Rep_3 1 487.2818298339844 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 62.667 1 62.667 62.167 63.167 0 0 0 0 0.53105 1 14023 14023 12.241 0 1 + 3373 17520 2148 2151 4178 4178 0.06178920866148019 DIDIRPGLY 9 Unmodified _DIDIRPGLY_ 0 0 0 ENST00000484312.1_1_3:179298984-179304429:+|nuORF;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A ENST00000484312.1_1_3:179298984-179304429:+|nuORF ENST00000484312.1_1_3:179298984-179304429:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 530.7454833984375 2 531.284931 1060.55531 0.32133 0.00017072 -0.20047 -0.00010651 0.12086 6.421E-05 531.2848618515508 59.524 0.67583 62.797 62.581 63.257 3.2731 47 43 2 0 0 0 0.078685 1 13849 13849 27.629 10.516 1 61721 3374 1165 2149 2152 4179 4179 0.027454390976799914 DIDIRPGLY 9 Unmodified _DIDIRPGLY_ 0 0 0 ENST00000484312.1_1_3:179298984-179304429:+|nuORF;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A ENST00000484312.1_1_3:179298984-179304429:+|nuORF ENST00000484312.1_1_3:179298984-179304429:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 530.7459106445312 2 531.284931 1060.55531 0.30056 0.00015968 -0.71663 -0.00038073 -0.41607 -0.00022105 531.2843434632969 59.556 0.23482 62.721 62.516 62.751 3.1651 19 15 2 0 0 0 0.10629 1 13905 13905 17.113 5.4726 1 72651 3375 1165 2149 2152 4180 4180 0.027454390976799914 DIDQNYYKV 9 Unmodified _DIDQNYYKV_ 0 0 0 REV__L1MD2_dup3889|chr6:154779809-154780355:-|1.222746642244923|0.0193867525811778|5.98|151.0|35|3|anti-sense REV__L1MD2_dup3889|chr6:154779809-154780355:-|1.222746642244923|0.0193867525811778|5.98|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.277587890625 2 579.277303 1156.54005 0.37955 0.00021987 -0.16243 -9.4095E-05 0.21712 0.00012577 579.2771229370014 58.179 0.7961 61.616 61.307 62.103 3.437 82 49 2 0 0 0 0.31407 1 13416 13416 13.042 0 1 243100 + 3376 27403 2150 2153 4181 4181 -0.031954724902107046 DIDQNYYKV 9 Unmodified _DIDQNYYKV_ 0 0 0 REV__L1MD2_dup3889|chr6:154779809-154780355:-|1.222746642244923|0.0193867525811778|5.98|151.0|35|3|anti-sense REV__L1MD2_dup3889|chr6:154779809-154780355:-|1.222746642244923|0.0193867525811778|5.98|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 579.2777709960938 2 579.277303 1156.54005 0.51966 0.00030103 -0.29953 -0.00017351 0.22013 0.00012752 579.2771326890671 58.389 0.74963 61.671 61.377 62.127 3.2818 78 43 3 0 0 0 0.24936 1 13535 13535 17.113 0 1 242390 + 3377 27403 2150 2153 4182 4182 -0.031954724902107046 DIFDRITPF 9 Unmodified _DIFDRITPF_ 0 0 0 REV__L1MEc_dup11811|chr10:38048443-38049254:+|1.355685118729964|0.1276537725198107|3.41|151.0|38|2|anti-sense REV__L1MEc_dup11811|chr10:38048443-38049254:+|1.355685118729964|0.1276537725198107|3.41|151.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.2927856445312 2 562.292756 1122.57096 0.29526 0.00016602 -0.27039 -0.00015204 0.024878 1.3989E-05 562.2925032012821 54.879 0.72676 58.449 58.11 58.837 3.5694 63 43 2 0 0 0 0.37599 1 11529 11529 9.3831 1.2276 1 105110 + 3378 28360 2151 2154 4183 4183 0.014577256146822037 DIFEWELM 8 Unmodified _DIFEWELM_ 0 0 0 REV__L1MC3_dup4265|chr5:142118037-142119606:-|1.7960641752471354|0.0586404567323246|4.94|151.0|7|1|sense REV__L1MC3_dup4265|chr5:142118037-142119606:-|1.7960641752471354|0.0586404567323246|4.94|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 541.74658203125 2 541.746793 1081.47903 NaN NaN NaN NaN NaN NaN NaN 20.068 1 23.718 23.218 24.218 3.6497 0 0 0 0.39819 1 1654 1654 8.5933 1.304 1 + 3379 26743 2152 2155 4184 4184 -0.058447007939776086 DIFMSAKIK 9 Unmodified _DIFMSAKIK_ 0 0 0 REV__L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|106|3|sense REV__L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|106|3|sense MSMS UPN48_class_I_Rep_3 7 526.7973022460938 2 526.794078 1051.5736 NaN NaN NaN NaN NaN NaN NaN 34.81 1 38.482 37.982 38.982 3.6721 0 0 0 0.39428 1 5570 5570 2.0598 0.40713 1 + 3380 25381 2153 2156 4185 4185 0.049878577480058084 DIFQQTPLGR 10 Unmodified _DIFQQTPLGR_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS UPN48_class_I_Rep_1 5 587.8148803710938 2 587.814387 1173.61422 0.48526 0.00028524 -0.68635 -0.00040345 -0.20109 -0.00011821 587.8142278045807 56.147 0.31417 59.649 59.472 59.786 3.5014 33 24 2 0 0 0 0.43841 1 12040 12040 16.566 8.9569 1 111720 3381 4649 2154 2157 4186 4186 0.034359153920149765 DIFQQTPLGR 10 Unmodified _DIFQQTPLGR_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP UPN48_class_I_Rep_3 7 588.2904663085938 2 587.814387 1173.61422 0.40028 0.00023529 -0.18997 -0.00011167 0.21031 0.00012362 587.8146849410294 56.085 0.36797 59.641 59.382 59.75 3.5554 45 30 2 0 0 0 0.84575 1 11962 11962 12.873 3.8964 1 73315 3382 4649 2154 2157 4187 4187 0.034359153920149765 DIFRGPLLSP 10 Unmodified _DIFRGPLLSP_ 0 0 0 MLT1D_dup17861|chr17:10116967-10117450:-|1.0199725552750492|0.013721930731407|6.22|151.0|24|1|anti-sense MLT1D_dup17861|chr17:10116967-10117450:-|1.0199725552750492|0.013721930731407|6.22|151.0|24|1|anti-sense MLT1D_dup17861|chr17:10116967-10117450:-|1.0199725552750492|0.013721930731407|6.22|151.0|24|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.8164672851562 2 557.816399 1113.61824 0.41306 0.00023041 -0.89207 -0.00049761 -0.47901 -0.0002672 557.8162588020394 45.157 0.4308 48.915 48.638 49.069 3.7579 41 32 2 0 0 0 0.56354 1 8656 8656 1.3295 0.13619 1 149260 3383 16342 2155 2158 4188 4188 0.0659800488572273 DIFSEVVGR 9 Unmodified _DIFSEVVGR_ 0 0 0 ENST00000550016.5_1_12:113600735-113603481:-|nuORF;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENST00000550016.5_1_12:113600735-113603481:-|nuORF ENST00000550016.5_1_12:113600735-113603481:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 511.2691955566406 2 511.269281 1020.52401 0.3455 0.00017664 -0.18206 -9.3084E-05 0.16343 8.3558E-05 511.2691549986545 64.426 0.55132 67.88 67.65 68.201 3.4541 82 44 2 0 0 0 0.0094161 4 14567 14530;14567;14611;14650 70.332 39.695 1 329510 3384 2405 2156 2159 4189;4190;4191;4192 4190 0.014568660635859487 DIFSEVVGR 9 Unmodified _DIFSEVVGR_ 0 0 0 ENST00000550016.5_1_12:113600735-113603481:-|nuORF;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENST00000550016.5_1_12:113600735-113603481:-|nuORF ENST00000550016.5_1_12:113600735-113603481:-|nuORF MSMS UPN48_class_I_Rep_1 5 511.2677307128906 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 64.778 1 68.232 67.732 68.732 3.4541 0 0 0 0.25702 1 14691 14691 13.042 5.7532 1 3385 2405 2156 2159 4193 4193 0.014568660635859487 DIFSEVVGR 9 Unmodified _DIFSEVVGR_ 0 0 0 ENST00000550016.5_1_12:113600735-113603481:-|nuORF;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENST00000550016.5_1_12:113600735-113603481:-|nuORF ENST00000550016.5_1_12:113600735-113603481:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 511.2694091796875 2 511.269281 1020.52401 0.35825 0.00018316 -0.26026 -0.00013306 0.097995 5.0102E-05 511.269081700738 64.235 0.68045 67.71 67.51 68.191 3.4743 113 52 3 0 0 0 0.0070571 5 14561 14481;14521;14561;14599;14642 86.332 48.358 1 271930 3386 2405 2156 2159 4194;4195;4196;4197;4198 4196 0.014568660635859487 DIFSEVVGR 9 Unmodified _DIFSEVVGR_ 0 0 0 ENST00000550016.5_1_12:113600735-113603481:-|nuORF;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENST00000550016.5_1_12:113600735-113603481:-|nuORF ENST00000550016.5_1_12:113600735-113603481:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 511.26934814453125 2 511.269281 1020.52401 0.32129 0.00016427 -0.25421 -0.00012997 0.067081 3.4296E-05 511.2691855355253 64.207 0.63843 67.715 67.428 68.067 3.5083 127 56 3 0 0 0 0.0058741 5 14383 14342;14383;14424;14461;14509 76.825 46.188 1 253740 3387 2405 2156 2159 4199;4200;4201;4202;4203 4200 0.014568660635859487 DIFSEVVGR 9 Unmodified _DIFSEVVGR_ 0 0 0 ENST00000550016.5_1_12:113600735-113603481:-|nuORF;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENST00000550016.5_1_12:113600735-113603481:-|nuORF ENST00000550016.5_1_12:113600735-113603481:-|nuORF MSMS UPN48_class_I_Rep_3 7 511.26953125 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 64.6 1 68.109 67.609 68.609 3.5083 0 0 0 0.37692 1 14535 14535 6.2058 0.47393 1 3388 2405 2156 2159 4204 4204 0.014568660635859487 DIFSLNFLF 9 Unmodified _DIFSLNFLF_ 0 0 0 REV__OR8B4|p.L71I|1|0.04|ENSG00000280090|chr11:124424661-124424661|G/T|missense_variant REV__OR8B4|p.L71I|1|0.04|ENSG00000280090|chr11:124424661-124424661|G/T|missense_variant MSMS UPN48_class_I_Rep_3 7 558.2940673828125 2 558.292225 1114.5699 NaN NaN NaN NaN NaN NaN NaN 70.598 1 74.117 73.617 74.617 3.5185 0 0 0 0.25702 1 16342 16342 13.042 2.2185 1 + 3389 21446 2157 2160 4205 4205 0.017195112458011863 DIFYKAIQK 9 Unmodified _DIFYKAIQK_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS UPN48_class_I_Rep_1 5 563.3189086914062 2 563.318774 1124.623 0.45405 0.00025577 -0.29921 -0.00016855 0.15484 8.7222E-05 563.3186649049443 41.917 0.46762 45.425 45.209 45.677 3.5079 63 47 2 0 0 0 0.21527 1 7732 7732 19.257 7.7623 1 238850 3390 670 2158 2161 4206 4206 0.0656688902845417 DIFYKAIQK 9 Unmodified _DIFYKAIQK_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-SECPEP UPN48_class_I_Rep_1 5 563.252197265625 2 563.318774 1124.623 0.45207 0.00025466 -0.58666 -0.00033048 -0.13459 -7.5817E-05 563.3178966947307 42.359 0.041298 45.866 45.836 45.878 3.5079 5 3 2 0 0 0 0.12321 1 7828 7828 3.9444 0 1 69313 3391 670 2158 2161 4207 4207 0.0656688902845417 DIFYKAIQK 9 Unmodified _DIFYKAIQK_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS UPN48_class_I_Rep_2 6 563.318115234375 2 563.318774 1124.623 0.43018 0.00024233 -0.23641 -0.00013317 0.19378 0.00010916 563.3185480093026 41.574 0.59534 45.325 45.093 45.688 3.7508 111 66 2 0 0 0 0.081756 2 7619 7585;7619 38.176 20.029 1 144230 3392 670 2158 2161 4208;4209 4209 0.0656688902845417 DIFYKAIQK 9 Unmodified _DIFYKAIQK_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS UPN48_class_I_Rep_3 7 563.3179931640625 2 563.318774 1124.623 0.34648 0.00019518 -0.32776 -0.00018463 0.018726 1.0549E-05 563.3185921297478 41.701 0.55411 45.347 45.139 45.693 3.6458 72 58 2 0 0 0 0.1249 3 7600 7566;7600;7611 29.082 14.243 1 151500 3393 670 2158 2161 4210;4211;4212 4211 0.0656688902845417 DIGGALSKLSE 11 Unmodified _DIGGALSKLSE_ 0 0 0 ENSG00000130656|ENST00000252951|HBZ ENSG00000130656|ENST00000252951|HBZ ENSG00000130656|ENST00000252951|HBZ MSMS UPN47_class_I_Rep_3 4 545.2918701171875 2 545.292953 1088.57135 NaN NaN NaN NaN NaN NaN NaN 26.38 1 29.728 29.228 30.228 3.3478 0 0 0 0.38417 1 3850 3850 2.7352 0 1 3394 2665 2159 2162 4213 4213 0.030611005438913708 DIHHKVLSL 9 Unmodified _DIHHKVLSL_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN47_class_I_Rep_1 2 531.3088989257812 2 531.308741 1060.60293 -0.082817 -4.4001E-05 0.36511 0.00019399 0.28229 0.00014999 531.308840168384 33.592 0.70935 37.291 36.938 37.647 3.6983 86 46 2 0 0 0 0.039218 2 5909 5909;5960 53.317 22.048 1 203720 3395 3109 2160 2163 4214;4215 4214 0.07505138088527019 DIHHKVLSL 9 Unmodified _DIHHKVLSL_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN47_class_I_Rep_2 3 531.30859375 2 531.308741 1060.60293 -0.1357 -7.2098E-05 0.14023 7.4505E-05 0.0045305 2.4071E-06 531.3086431262108 33.974 0.83313 37.414 36.968 37.801 3.4398 89 53 2 0 0 0 0.065535 2 6089 6041;6089 42.312 20.776 1 161160 3396 3109 2160 2163 4216;4217 4217 0.07505138088527019 DIHHKVLSL 9 Unmodified _DIHHKVLSL_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN47_class_I_Rep_3 4 531.3087158203125 2 531.308741 1060.60293 -0.17551 -9.3249E-05 -0.27127 -0.00014413 -0.44678 -0.00023738 531.3084144107062 34.262 0.87643 37.537 37.089 37.965 3.2748 94 62 2 0 0 0 0.079935 3 6191 6155;6191;6235 38.615 15.878 1 153550 3397 3109 2160 2163 4218;4219;4220 4219 0.07505138088527019 DIHIFMVSCCC 11 Unmodified _DIHIFMVSCCC_ 0 0 0 L1ME2_dup6812|chr9:70333751-70334520:+|1.0788336294175884|0.1046029106766808|3.37|151.0|27|3|sense L1ME2_dup6812|chr9:70333751-70334520:+|1.0788336294175884|0.1046029106766808|3.37|151.0|27|3|sense L1ME2_dup6812|chr9:70333751-70334520:+|1.0788336294175884|0.1046029106766808|3.37|151.0|27|3|sense MSMS UPN47_class_I_Rep_3 4 635.7576293945312 2 635.757997 1269.50144 NaN NaN NaN NaN NaN NaN NaN 111.57 1 115.1 114.6 115.6 3.5207 0 0 0 0.38417 1 27390 27390 1.3295 0.72803 1 3398 12516 2161 2164 4221 4221 -0.12252883983842366 DIHLFLLCE 9 Unmodified _DIHLFLLCE_ 0 0 0 REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|344|3|anti-sense REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|344|3|anti-sense MSMS UPN47_class_I_Rep_1 2 551.7866821289062 2 551.78371 1101.55287 NaN NaN NaN NaN NaN NaN NaN 29.204 1 32.962 32.462 33.462 3.7578 0 0 0 0.38639 1 4606 4606 3.9444 0.94915 1 + 3399 29842 2162 2165 4222 4222 0.006152673683345711 DIHSHMHRK 9 Unmodified _DIHSHMHRK_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 580.791259765625 2 580.790724 1159.56689 NaN NaN NaN NaN NaN NaN NaN 26.151 1 29.785 29.285 30.285 3.6332 0 0 0 0.39518 1 3291 3291 1.8442 0.19162 1 + 3400 29435 2163 2166 4223 4223 -0.006506423600058042 DIIIVGRGI 9 Unmodified _DIIIVGRGI_ 0 0 0 ENSG00000114491|ENST00000232607|UMPS;nc|ENSG00000114491|P11172-4|UMPS;nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS ENSG00000114491|ENST00000232607|UMPS ENSG00000114491|ENST00000232607|UMPS MULTI-MSMS UPN47_class_I_Rep_2 3 478.30035400390625 2 478.300384 954.586216 0.09963 4.7653E-05 -0.1774 -8.4852E-05 -0.077774 -3.7199E-05 478.3002853047826 68.157 0.53267 71.427 71.192 71.724 3.2696 68 45 2 0 0 0 0.37599 1 16512 16512 9.3831 9.3831 1 120510 3401 2078 2164 2167 4224 4224 0.10710637202578255 DIIKKPIAL 9 Unmodified _DIIKKPIAL_ 0 0 0 nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A MULTI-MSMS UPN47_class_I_Rep_1 2 505.8343200683594 2 505.83406 1009.65357 -0.010064 -5.0905E-06 0.59915 0.00030307 0.58909 0.00029798 505.83426850498523 47.342 0.57175 51.037 50.595 51.167 3.6951 73 50 2 0 0 0 0.066633 3 10148 10070;10112;10148 41.84 16.44 1 386450 3402 5442 2165 2168 4225;4226;4227 4227 0.14912667413500458 DIIKKPIAL 9 Unmodified _DIIKKPIAL_ 0 0 0 nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A MULTI-MSMS UPN47_class_I_Rep_2 3 505.83441162109375 2 505.83406 1009.65357 0.056172 2.8414E-05 0.61623 0.00031171 0.6724 0.00034013 505.8342966651274 47.617 0.87945 50.966 50.646 51.526 3.3492 103 78 2 0 0 0 0.043452 3 10250 10213;10250;10284 51.63 17.112 1 242300 3403 5442 2165 2168 4228;4229;4230 4229 0.14912667413500458 DIIKKPIAL 9 Unmodified _DIIKKPIAL_ 0 0 0 nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A MULTI-MSMS UPN47_class_I_Rep_3 4 505.8345642089844 2 505.83406 1009.65357 0.1793 9.0698E-05 0.43035 0.00021768 0.60965 0.00030838 505.83427672305993 47.782 0.5484 51.023 50.978 51.526 3.2405 80 47 2 0 0 0 0.052902 2 10325 10325;10368 47.749 17.112 1 338640 3404 5442 2165 2168 4231;4232 4231 0.14912667413500458 DIIKKPIAL 9 Unmodified _DIIKKPIAL_ 0 0 0 nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A MSMS UPN47_class_I_Rep_3 4 505.8348693847656 2 505.83406 1009.65357 NaN NaN NaN NaN NaN NaN NaN 47.608 1 50.849 50.349 51.349 3.2405 0 0 0 0.10315 1 10288 10288 24.021 3.5669 1 3405 5442 2165 2168 4233 4233 0.14912667413500458 DIIKSLALS 9 Unmodified _DIIKSLALS_ 0 0 0 ENST00000478207.1_1_2:109068856-109085439:+|nuORF ENST00000478207.1_1_2:109068856-109085439:+|nuORF ENST00000478207.1_1_2:109068856-109085439:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 480.2924499511719 2 480.292225 958.569897 0.10968 5.2677E-05 -0.38074 -0.00018287 -0.27107 -0.00013019 480.29194855940705 71.663 0.45229 75.038 74.697 75.15 3.3751 55 35 2 0 0 0 0.26468 3 17458 17402;17458;17495 16.149 0 1 120710 3406 6978 2166 2169 4234;4235;4236 4235 0.08895511245793841 DIIRKTFT 8 Unmodified _DIIRKTFT_ 0 0 0 MSTD-int_dup528|chr10:87886977-87888294:+|2.947138293787685|0.1115571712734523|4.72|151.0|63|2|anti-sense MSTD-int_dup528|chr10:87886977-87888294:+|2.947138293787685|0.1115571712734523|4.72|151.0|63|2|anti-sense MSTD-int_dup528|chr10:87886977-87888294:+|2.947138293787685|0.1115571712734523|4.72|151.0|63|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.2627258300781 2 497.290017 992.565481 -0.25026 -0.00012445 0.2529 0.00012576 0.0026409 1.3133E-06 497.2901364312516 38.475 0.45734 42.14 41.89 42.348 3.6652 40 34 2 0 0 0 0.82752 1 7461 7461 4.3292 4.3292 1 44079 3407 16606 2167 2170 4237 4237 0.06890046822900331 DIIYKKIAL 9 Unmodified _DIIYKKIAL_ 0 0 0 ENSG00000164190|ENST00000282516|NIPBL ENSG00000164190|ENST00000282516|NIPBL ENSG00000164190|ENST00000282516|NIPBL MULTI-MSMS UPN47_class_I_Rep_1 2 538.8391723632812 2 538.839342 1075.66413 0.27561 0.00014851 0.028096 1.5139E-05 0.30371 0.00016365 538.8391255140384 50.955 0.78648 54.548 54.152 54.938 3.5932 65 36 3 0 0 0 0.097406 1 11204 11204 34.402 10.381 1 140080 3408 4095 2168 2171 4238 4238 0.12932650067932627 DIIYKKIAL 9 Unmodified _DIIYKKIAL_ 0 0 0 ENSG00000164190|ENST00000282516|NIPBL ENSG00000164190|ENST00000282516|NIPBL ENSG00000164190|ENST00000282516|NIPBL MULTI-MSMS UPN47_class_I_Rep_3 4 538.8389892578125 2 538.839342 1075.66413 0.51919 0.00027976 -0.59678 -0.00032157 -0.07758 -4.1803E-05 538.8388995092022 51.428 0.96073 54.645 54.291 55.252 3.2163 72 49 2 0 0 0 0.23293 1 11391 11391 18.146 3.3081 1 105480 3409 4095 2168 2171 4239 4239 0.12932650067932627 DIKAKTVQ 8 Unmodified _DIKAKTVQ_ 0 0 0 REV__L1ME5_dup530|chr2:210140002-210141110:-|1.6325918287616028|0.1845591343127002|3.15|151.0|11|1|sense REV__L1ME5_dup530|chr2:210140002-210141110:-|1.6325918287616028|0.1845591343127002|3.15|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 451.7688293457031 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 20.052 1 23.404 22.904 23.904 3.3514 0 0 0 0.40292 1 1994 1994 6.7232 0 1 + 3410 28333 2169 2172 4240 4240 0.06858071414512779 DIKALRLE 8 Unmodified _DIKALRLE_ 0 0 0 REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A MULTI-MSMS UPN47_class_I_Rep_2 3 479.2901306152344 2 479.290017 956.565481 -0.23315 -0.00011175 -0.04978 -2.3859E-05 -0.28293 -0.00013561 479.2900073655146 31.57 0.675 35.039 34.644 35.319 3.4691 105 56 2 0 0 0 0.82752 1 5339 5339 20.454 0 1 141560 + 3411 20808 2170 2173 4241 4241 0.08546046822880271 DIKAQIIF 8 Unmodified _DIKAQIIF_ 0 0 0 REV__nc|ENSG00000155816|Q9NZ56-2|FMN2 REV__nc|ENSG00000155816|Q9NZ56-2|FMN2 MSMS UPN46_class_I_Rep_3 1 474.2821044921875 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 26.146 1 26.146 25.646 26.646 0 0 0 0 0.40643 1 3693 3693 2.0598 0 1 + 3412 19773 2171 2174 4242 4242 0.07335545936950894 DIKAQIIF 8 Unmodified _DIKAQIIF_ 0 0 0 REV__nc|ENSG00000155816|Q9NZ56-2|FMN2 REV__nc|ENSG00000155816|Q9NZ56-2|FMN2 MSMS UPN47_class_I_Rep_1 2 474.28240966796875 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 110.1 1 113.68 113.18 114.18 3.5835 0 0 0 0.40604 1 27155 27155 2.5775 0 1 + 3413 19773 2171 2174 4243 4243 0.07335545936950894 DIKERISL 8 Unmodified _DIKERISL_ 0 0 0 REV__L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|18|2|sense REV__L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.28753662109375 2 487.287474 972.560395 -0.29873 -0.00014557 0.33763 0.00016452 0.038893 1.8952E-05 487.2875842320862 31.709 0.80768 35.438 35.158 35.966 3.7293 131 62 3 0 0 0 0.82752 1 5415 5415 13.906 0 1 363490 + 3414 27308 2172 2175 4244 4244 0.07301742960294177 DIKERISL 8 Unmodified _DIKERISL_ 0 0 0 REV__L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|18|2|sense REV__L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.2872009277344 2 487.287474 972.560395 -0.43198 -0.0002105 0.38955 0.00018982 -0.042432 -2.0677E-05 487.2875626188754 32.206 0.86614 35.493 35.121 35.987 3.2867 186 65 4 0 0 0 0.82752 2 5593 5593;5630 27.629 0 1 288170 + 3415 27308 2172 2175 4245;4246 4245 0.07301742960294177 DIKKEVNK 8 Unmodified _DIKKEVNK_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS UPN47_class_I_Rep_1 2 487.2873840332031 2 487.287474 972.560395 -0.29873 -0.00014557 0.33763 0.00016452 0.038893 1.8952E-05 487.2875842320862 31.709 0.80768 35.438 35.158 35.966 3.7293 131 62 3 0 0 0 0.82752 2 5427 5377;5427 31.268 0 1 363490 + 3416 19407 2173 2176 4247;4248 4248 0.07301742960282809 DIKKEVNK 8 Unmodified _DIKKEVNK_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS UPN47_class_I_Rep_2 3 487.2872619628906 2 487.287474 972.560395 -0.14271 -6.9539E-05 0.11918 5.8075E-05 -0.023527 -1.1464E-05 487.28746243327913 31.958 0.99833 35.428 34.949 35.947 3.4691 168 73 3 0 0 0 0.82752 3 5453 5453;5490;5528 27.629 0 1 374750 + 3417 19407 2173 2176 4249;4250;4251 4249 0.07301742960282809 DIKKEVNK 8 Unmodified _DIKKEVNK_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS UPN47_class_I_Rep_3 4 487.2872619628906 2 487.287474 972.560395 -0.43198 -0.0002105 0.38955 0.00018982 -0.042432 -2.0677E-05 487.2875626188754 32.206 0.86614 35.493 35.121 35.987 3.2867 186 65 4 0 0 0 0.82752 1 5555 5555 24.991 0 1 288170 + 3418 19407 2173 2176 4252 4252 0.07301742960282809 DIKKEVNK 8 Unmodified _DIKKEVNK_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MULTI-SECPEP UPN47_class_I_Rep_3 4 486.7587890625 2 487.287474 972.560395 -0.43198 -0.0002105 0.38955 0.00018982 -0.042432 -2.0677E-05 487.2875626188754 32.206 0.86614 35.493 35.121 35.987 3.2867 186 65 4 0 0 0 0.72333 1 5519 5519 12.241 0 1 288170 + 3419 19407 2173 2176 4253 4253 0.07301742960282809 DIKLNNLK 8 Unmodified _DIKLNNLK_ 0 0 0 L1ME1_dup17820|chrX:54574071-54575447:-|1.0418250385423171|0.1618801434671879|2.69|151.0|7|1|sense L1ME1_dup17820|chrX:54574071-54575447:-|1.0418250385423171|0.1618801434671879|2.69|151.0|7|1|sense L1ME1_dup17820|chrX:54574071-54575447:-|1.0418250385423171|0.1618801434671879|2.69|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2907409667969 2 479.290017 956.565481 -0.31795 -0.00015239 0.097212 4.6593E-05 -0.22074 -0.0001058 479.29007000676415 31.261 0.61574 34.99 34.681 35.296 3.7293 98 46 3 0 0 0 0.82752 2 5162 5162;5205 15.847 0 1 171820 3420 12263 2174 2177 4254;4255 4254 0.08546046822903008 DIKSHYAF 8 Unmodified _DIKSHYAF_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN47_class_I_Rep_1 2 490.7451171875 2 490.745442 979.476331 -0.27761 -0.00013624 0.2438 0.00011965 -0.033807 -1.659E-05 490.7454932444169 35.374 0.92073 39.05 38.771 39.692 3.6762 140 62 3 0 0 0 0.82752 4 6585 6429;6506;6543;6585 39.95 23.007 1 261310 3421 5082 2175 2178 4256;4257;4258;4259 4259 -0.014227881366196016 DIKSHYAF 8 Unmodified _DIKSHYAF_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN47_class_I_Rep_2 3 490.745361328125 2 490.745442 979.476331 -0.10533 -5.1689E-05 0.13135 6.4458E-05 0.02602 1.2769E-05 490.74541823309966 35.706 0.87788 39.118 38.786 39.664 3.4114 131 60 3 0 0 0 0.82752 6 6540 6540;6582;6622;6661;6703;6741 47.749 32.786 1 232230 3422 5082 2175 2178 4260;4261;4262;4263;4264;4265 4260 -0.014227881366196016 DIKSHYAF 8 Unmodified _DIKSHYAF_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN47_class_I_Rep_3 4 490.7450866699219 2 490.745442 979.476331 -0.33895 -0.00016634 0.24629 0.00012087 -0.09266 -4.5473E-05 490.745536026397 35.845 1.087 39.099 38.795 39.882 3.2547 145 71 3 0 0 0 0.82752 7 6784 6666;6706;6744;6784;6820;6842;6868 47.749 26.002 1 217050 3423 5082 2175 2178 4266;4267;4268;4269;4270;4271;4272 4269 -0.014227881366196016 DIKTKQQL 8 Unmodified _DIKTKQQL_ 0 0 0 REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.28729248046875 2 487.287474 972.560395 -0.29873 -0.00014557 0.33763 0.00016452 0.038893 1.8952E-05 487.2875842320862 31.709 0.80768 35.438 35.158 35.966 3.7293 131 62 3 0 0 0 0.82752 1 5335 5335 29.082 0 1 363490 + 3424 29295 2176 2179 4273 4273 0.0730174296027144 DIKVPVTRGR 10 Unmodified _DIKVPVTRGR_ 0 0 0 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS UPN46_class_I_Rep_3 1 570.8480224609375 2 570.846022 1139.67749 NaN NaN NaN NaN NaN NaN NaN 109.06 1 109.06 108.56 109.56 0 0 0 0 0.53105 1 26729 26729 13.615 0.5724 1 + 3425 20243 2177 2180 4274 4274 0.11323900899878936 DIKVPVTRGR 10 Unmodified _DIKVPVTRGR_ 0 0 0 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 REV__nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS UPN46_class_I_Rep_3 1 570.8484497070312 2 570.846022 1139.67749 NaN NaN NaN NaN NaN NaN NaN 109.29 1 109.29 108.79 109.79 0 0 0 0 0.53105 1 26818 26818 15.248 3.0078 1 + 3426 20243 2177 2180 4275 4275 0.11323900899878936 DILAHPPGDSP 11 Unmodified _DILAHPPGDSP_ 0 0 0 ENSG00000273706|ENST00000614239|LHX1 ENSG00000273706|ENST00000614239|LHX1 ENSG00000273706|ENST00000614239|LHX1 MSMS UPN47_class_I_Rep_2 3 559.7780151367188 2 559.77747 1117.54039 NaN NaN NaN NaN NaN NaN NaN 22.172 1 25.596 25.096 26.096 3.4241 0 0 0 0.38417 1 2589 2589 1.1933 0 1 3427 5817 2178 2181 4276 4276 -0.013680527703172629 DILELRIAI 9 Unmodified _DILELRIAI_ 0 0 0 L1MEg_dup9976|chr11:43465184-43465609:+|3.141729569702884|0.1043377405093634|4.91|151.0|17|3|sense L1MEg_dup9976|chr11:43465184-43465609:+|3.141729569702884|0.1043377405093634|4.91|151.0|17|3|sense L1MEg_dup9976|chr11:43465184-43465609:+|3.141729569702884|0.1043377405093634|4.91|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.3265380859375 2 528.326599 1054.63865 0.20961 0.00011074 0.25848 0.00013656 0.46809 0.0002473 528.3267817169075 60.862 0.043957 64.127 64.097 64.141 3.2654 6 4 2 0 0 0 0.42249 1 14268 14268 6.7232 0 1 56996 3428 13436 2179 2182 4277 4277 0.11351175545519254 DILFVRKLH 9 Unmodified _DILFVRKLH_ 0 0 0 REV__ENSG00000117751|ENST00000311772|PPP1R8 REV__ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS UPN47_class_I_Rep_1 2 570.8486938476562 2 570.848033 1139.68151 0.4854 0.00027709 -0.22047 -0.00012586 0.26493 0.00015123 570.8478412688097 110.47 0.11504 114.06 114.03 114.14 3.5835 24 13 2 0 0 0 0.47197 1 27250 27250 3.5965 1.5367 1 227330 + 3429 18640 2180 2183 4278 4278 0.11725990393620123 DILFVRKLH 9 Unmodified _DILFVRKLH_ 0 0 0 REV__ENSG00000117751|ENST00000311772|PPP1R8 REV__ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 570.848033 1139.68151 0.4854 0.00027709 -0.22047 -0.00012586 0.26493 0.00015123 570.8478412688097 110.47 0.11504 114.06 114.03 114.14 3.5835 -0.024941 0.00019771 NaN 3.5965 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 227330 + 3430 18640 2180 2183 0.11725990393620123 DILFVRKLH 9 Unmodified _DILFVRKLH_ 0 0 0 REV__ENSG00000117751|ENST00000311772|PPP1R8 REV__ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MATCH UPN47_class_I_Rep_3 4 2 570.848033 1139.68151 0.50499 0.00028827 -0.71788 -0.0004098 -0.21288 -0.00012152 570.8476084093198 110.58 0.16161 114.11 114.04 114.2 3.529 0.024941 -0.00037018 NaN 3.5965 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 58083 + 3431 18640 2180 2183 0.11725990393620123 DILIIHLKRF 10 Unmodified _DILIIHLKRF_ 0 0 0 nc|ENSG00000154914|Q70EL4-2|USP43;nc|ENSG00000154914|Q70EL4-3|USP43;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43 nc|ENSG00000154914|Q70EL4-2|USP43 nc|ENSG00000154914|Q70EL4-2|USP43 MSMS UPN47_class_I_Rep_2 3 634.8223876953125 2 634.39789 1266.78123 NaN NaN NaN NaN NaN NaN NaN 74.521 1 77.834 77.334 78.334 3.3127 0 0 0 0.53105 1 18367 18367 1.4819 0 1 3432 3686 2181 2184 4279 4279 0.15850808007553496 DILKKDTPA 9 Unmodified _DILKKDTPA_ 0 0 0 REV__HERVK11-int_dup105|chr8:8129490-8131209:+|4.443349082515164|0.4784470291930464|3.22|150.0|51|3|sense REV__HERVK11-int_dup105|chr8:8129490-8131209:+|4.443349082515164|0.4784470291930464|3.22|150.0|51|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 500.8182678222656 2 500.787307 999.560061 0.34538 0.00017296 3.3604 0.0016828 3.7058 0.0018558 500.78883373335805 87.772 0.041313 91.219 91.189 91.23 3.4471 6 4 2 0 0 0 0.11959 1 21820 21820 4.3292 0 1 114690 + 3433 23794 2182 2185 4280 4280 0.06026323240405418 DILNAQHLAS 10 Unmodified _DILNAQHLAS_ 0 0 0 REV__L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|138|3|sense REV__L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|138|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.2852172851562 2 541.285463 1080.55637 0.4082 0.00022095 0.3272 0.00017711 0.7354 0.00039806 541.2855049768265 41.23 0.48261 44.736 44.481 44.963 3.506 59 40 2 0 0 0 0.505 1 7503 7503 11.495 11.495 1 107030 + 3434 29486 2183 2186 4281 4281 0.01931653466544958 DILNKALEL 9 Unmodified _DILNKALEL_ 0 0 0 ENST00000528400.1_1_8:42939784-42940422:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000430308.1_1_13:22105114-22105396:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF MSMS UPN47_class_I_Rep_1 2 514.791748046875 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 67.159 1 70.52 70.02 71.02 3.3611 0 0 0 0.070158 1 16132 16132 31.268 5.0002 1 3435 4378 2184 2187 4282 4282 0.07866896274504143 DILNKALEL 9 Unmodified _DILNKALEL_ 0 0 0 ENST00000528400.1_1_8:42939784-42940422:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000430308.1_1_13:22105114-22105396:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF MSMS UPN47_class_I_Rep_2 3 514.7921142578125 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 67.424 1 70.687 70.187 71.187 3.2636 0 0 0 0.27207 1 16260 16260 12.241 0 1 3436 4378 2184 2187 4283 4283 0.07866896274504143 DILPKKIL 8 Unmodified _DILPKKIL_ 0 0 0 ENSG00000104472|ENST00000220913|CHRAC1 ENSG00000104472|ENST00000220913|CHRAC1 ENSG00000104472|ENST00000220913|CHRAC1 MULTI-MSMS UPN47_class_I_Rep_1 2 470.3154296875 2 470.315503 938.616454 -0.025122 -1.1815E-05 -0.060267 -2.8345E-05 -0.085389 -4.016E-05 470.3153978583605 50.534 0.86184 54.162 53.78 54.642 3.6285 81 39 3 0 0 0 0.82752 1 11062 11062 20.454 3.5113 1 309060 3437 1691 2185 2188 4284 4284 0.14468995867753165 DILPKKIL 8 Unmodified _DILPKKIL_ 0 0 0 ENSG00000104472|ENST00000220913|CHRAC1 ENSG00000104472|ENST00000220913|CHRAC1 ENSG00000104472|ENST00000220913|CHRAC1 MULTI-SECPEP UPN47_class_I_Rep_2 3 470.2505798339844 2 470.315503 938.616454 0.098523 4.6337E-05 -0.33152 -0.00015592 -0.233 -0.00010958 470.3153393217464 50.83 1.2486 54.168 53.773 55.021 3.3386 97 65 2 0 0 0 0.72333 1 11154 11154 26.884 5.137 1 210760 3438 1691 2185 2188 4285 4285 0.14468995867753165 DILSQLMCR 9 Unmodified _DILSQLMCR_ 0 0 0 L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|24|3|sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|24|3|sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|24|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 539.7733764648438 2 539.772819 1077.53109 0.46594 0.0002515 -0.44961 -0.00024269 0.016331 8.8149E-06 539.7726876456945 65.755 0.81576 69.206 68.893 69.709 3.4516 132 56 3 0 0 0 0.20317 1 15089 15089 20.415 3.3016 1 1206400 3439 9127 2186 2189 4286 4286 -0.004578606518634842 DILTEVEIL 9 Unmodified _DILTEVEIL_ 0 0 0 nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A;ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A nc|ENSG00000128655|Q9HCR9-2|PDE11A nc|ENSG00000128655|Q9HCR9-2|PDE11A MSMS UPN47_class_I_Rep_1 2 522.79638671875 2 522.794798 1043.57504 NaN NaN NaN NaN NaN NaN NaN 34.35 1 38.036 37.536 38.536 3.6859 0 0 0 0.38639 1 6170 6170 3.9444 0 1 3440 2598 2187 2190 4287 4287 0.05499770317783259 DILTRHFTI 9 Unmodified _DILTRHFTI_ 0 0 0 ENST00000584561.1_1_17:8110402-8113858:-|nuORF;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB ENST00000584561.1_1_17:8110402-8113858:-|nuORF ENST00000584561.1_1_17:8110402-8113858:-|nuORF MSMS UPN48_class_I_Rep_3 7 558.3135375976562 2 558.314023 1114.61349 NaN NaN NaN NaN NaN NaN NaN 40.464 1 44.115 43.615 44.615 3.6509 0 0 0 0.36505 1 7199 7199 7.2892 2.5332 1 3441 4841 2188 2191 4288 4288 0.06077120742952502 DINEVFFN 8 Unmodified _DINEVFFN_ 0 0 0 Tigger4_dup650|chr6:144167916-144169663:-|3.0911156952309824|0.042742963126863|6.18|150.0|51|3|sense Tigger4_dup650|chr6:144167916-144169663:-|3.0911156952309824|0.042742963126863|6.18|150.0|51|3|sense Tigger4_dup650|chr6:144167916-144169663:-|3.0911156952309824|0.042742963126863|6.18|150.0|51|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 499.23504638671875 2 499.234907 996.455261 0.19297 9.6339E-05 0.49243 0.00024584 0.68541 0.00034218 499.2349400253995 77.098 0.78741 80.513 80.149 80.936 3.4149 139 71 3 0 0 0 0.72333 1 19111 19111 7.9102 0.62092 1 363190 3442 33426 2189 2192 4289 4289 -0.04310798236133451 DIQAQLVYR 9 Unmodified _DIQAQLVYR_ 0 0 0 REV__nc|ENSG00000137672|Q9Y210-2|TRPC6 REV__nc|ENSG00000137672|Q9Y210-2|TRPC6 MULTI-MSMS UPN47_class_I_Rep_1 2 553.3048706054688 2 553.303655 1104.59276 0.4145 0.00022934 -1.1938 -0.00066051 -0.77927 -0.00043117 553.3030104435954 58.112 0.7699 61.549 61.096 61.866 3.437 72 48 2 0 0 0 0.40174 1 13438 13438 7.9102 0.62092 1 114780 + 3443 19239 2190 2193 4290 4290 0.04464530363270569 DIQPQLTKMTG 11 Unmodified _DIQPQLTKMTG_ 0 0 0 MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|60|2|anti-sense MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|60|2|anti-sense MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|60|2|anti-sense MSMS UPN46_class_I_Rep_3 1 616.3211059570312 2 616.321188 1230.62782 NaN NaN NaN NaN NaN NaN NaN 64.358 1 64.358 63.858 64.858 0 0 0 0 0.38417 1 14482 14482 2.4985 0.43874 1 3444 15790 2191 2194 4291 4291 0.021734051088969863 DIQRPYAD 8 Unmodified _DIQRPYAD_ 0 0 0 REV__ENST00000595585.1_1_19:51446889-51452204:-|nuORF REV__ENST00000595585.1_1_19:51446889-51452204:-|nuORF MSMS UPN47_class_I_Rep_3 4 489.236328125 2 489.237981 976.461409 NaN NaN NaN NaN NaN NaN NaN 44.568 1 47.812 47.312 48.312 3.2441 0 0 0 0.40404 1 9359 9359 5.2307 0 1 + 3445 20237 2192 2195 4292 4292 -0.027762800046275515 DIRQKALK 8 Unmodified _DIRQKALK_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000480125.1_1_X:24766454-24793337:+|nuORF ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MSMS UPN47_class_I_Rep_1 2 486.3033142089844 2 486.303458 970.592364 NaN NaN NaN NaN NaN NaN NaN 39.328 1 42.993 42.493 43.493 3.6652 0 0 0 0.4044 1 7679 7679 4.756 0.42677 1 3446 1589 2193 2196 4293 4293 0.10589155434092845 DIRSDEIFY 9 Unmodified _DIRSDEIFY_ 0 0 0 REV__L1PA7_dup12584|chr20:3522345-3528081:+|4.940146692166972|0.0510302459137463|6.6|151.0|317|3|anti-sense REV__L1PA7_dup12584|chr20:3522345-3528081:+|4.940146692166972|0.0510302459137463|6.6|151.0|317|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.2769165039062 2 579.277303 1156.54005 0.37955 0.00021987 -0.16243 -9.4095E-05 0.21712 0.00012577 579.2771229370014 58.179 0.7961 61.616 61.307 62.103 3.437 82 49 2 0 0 0 0.31407 1 13457 13457 13.042 0.80181 1 243100 + 3447 30017 2194 2197 4294 4294 -0.03195472490187967 DIRSDEIFY 9 Unmodified _DIRSDEIFY_ 0 0 0 REV__L1PA7_dup12584|chr20:3522345-3528081:+|4.940146692166972|0.0510302459137463|6.6|151.0|317|3|anti-sense REV__L1PA7_dup12584|chr20:3522345-3528081:+|4.940146692166972|0.0510302459137463|6.6|151.0|317|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.2772827148438 2 579.277303 1156.54005 0.34065 0.00019733 -0.021738 -1.2592E-05 0.31892 0.00018474 579.277250430345 58.455 0.86735 61.62 61.362 62.23 3.1658 94 53 2 0 0 0 0.37599 2 13554 13554;13597 9.3831 2.0939 1 219000 + 3448 30017 2194 2197 4295;4296 4295 -0.03195472490187967 DISEVDPAY 9 Unmodified _DISEVDPAY_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS UPN46_class_I_Rep_3 1 504.8088073730469 2 504.729655 1007.44476 NaN NaN NaN NaN NaN NaN NaN 40.972 1 40.972 40.472 41.472 0 0 0 0 0.38478 1 7991 7991 4.3292 1.44 1 3449 3669 2195 2198 4297 4297 -0.058668256812325126 DISIIMHYQ 9 Unmodified _DISIIMHYQ_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|35|1|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|35|1|sense MSMS UPN47_class_I_Rep_2 3 560.2783813476562 2 560.278792 1118.54303 NaN NaN NaN NaN NaN NaN NaN 46.616 1 49.967 49.467 50.467 3.3515 0 0 0 0.38639 1 9933 9933 3.9444 1.6417 1 + 3450 24095 2196 2199 4298 4298 -0.011499206370217507 DISIITLDV 9 Unmodified _DISIITLDV_ 0 0 0 L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|48|3|sense L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|48|3|sense L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|48|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.7821044921875 2 494.78169 987.548827 0.34043 0.00016844 -0.14514 -7.1811E-05 0.1953 9.6629E-05 494.78153266060383 58.889 0.51928 62.171 61.928 62.447 3.2818 43 32 2 0 0 0 0.18929 1 13655 13655 21.747 0 1 128630 3451 13041 2197 2200 4299 4299 0.05455501146286679 DISLSKIRQ 9 Unmodified _DISLSKIRQ_ 0 0 0 L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|12|1|sense L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|12|1|sense L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.3115234375 2 530.31148 1058.60841 -0.16423 -8.7091E-05 -0.37127 -0.00019689 -0.5355 -0.00028398 530.3110287583477 38.292 0.1038 41.68 41.613 41.717 3.3879 15 10 2 0 0 0 0.43153 1 7389 7389 6.2058 0.97511 1 68821 3452 9908 2198 2201 4300 4300 0.08144816880303551 DISPPIFRR 9 Unmodified _DISPPIFRR_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-4|SLA;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN48_class_I_Rep_1 5 550.814453125 2 550.81419 1099.61383 0.48296 0.00026602 -0.084841 -4.6732E-05 0.39811 0.00021929 550.814019153057 45.807 1.1054 49.323 48.839 49.944 3.5162 142 75 3 0 0 0 0.052902 4 8810 8810;8852;8898;8939 47.749 16.44 1 401500 3453 3716 2199 2202 4301;4302;4303;4304 4301 0.06800540462791105 DISPPIFRR 9 Unmodified _DISPPIFRR_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-4|SLA;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN48_class_I_Rep_2 6 550.8141479492188 2 550.81419 1099.61383 0.40449 0.0002228 0.01757 9.6779E-06 0.42206 0.00023247 550.8140032306576 45.513 0.88938 49.271 48.874 49.764 3.7579 147 66 3 0 0 0 0.052902 6 8785 8708;8748;8785;8823;8860;8902 47.749 17.112 1 383330 3454 3716 2199 2202 4305;4306;4307;4308;4309;4310 4307 0.06800540462791105 DISPPIFRR 9 Unmodified _DISPPIFRR_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-4|SLA;ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN48_class_I_Rep_3 7 550.8138427734375 2 550.81419 1099.61383 0.32862 0.00018101 -0.027694 -1.5254E-05 0.30093 0.00016576 550.8140374422735 45.742 0.89916 49.379 48.967 49.867 3.6369 129 64 3 0 0 0 0.021334 6 8790 8710;8752;8790;8828;8836;8871 62.573 26.446 1 366230 3455 3716 2199 2202 4311;4312;4313;4314;4315;4316 4313 0.06800540462791105 DISRIEVYY 9 Unmodified _DISRIEVYY_ 0 0 0 REV__L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|249|2|anti-sense REV__L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|249|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 579.2953491210938 2 579.295496 1156.57644 0.33358 0.00019324 -1.3868 -0.00080338 -1.0532 -0.00061014 579.2943115378492 55.304 0.72392 58.782 58.452 59.176 3.4785 75 43 2 0 0 0 0.082517 1 12522 12522 25.399 4.9848 1 265130 + 3456 30059 2200 2203 4317 4317 0.004414044065242706 DISRIEVYY 9 Unmodified _DISRIEVYY_ 0 0 0 REV__L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|249|2|anti-sense REV__L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|249|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 579.295496 1156.57644 0.41581 0.00024088 -2.041 -0.0011823 -1.6252 -0.00094147 579.2939519353071 55.632 1.0025 58.81 58.491 59.494 3.1779 0.013807 -0.00033907 NaN 25.399 101 65 2 NaN NaN NaN NaN 0 NaN NaN 0 249900 + 3457 30059 2200 2203 0.004414044065242706 DISVHLVEV 9 Unmodified _DISVHLVEV_ 0 0 0 ENST00000474154.5_1_2:37458848-37468954:+|nuORF;ENSG00000003509.16,NDUFAF7,chr2,+,I7.1,37243974,37246051|38|5.45|3|intron;ENSG00000003509|ENST00000002125|NDUFAF7 ENST00000474154.5_1_2:37458848-37468954:+|nuORF ENST00000474154.5_1_2:37458848-37468954:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 505.7809143066406 2 505.779482 1009.54441 0.24494 0.00012389 0.19107 9.6638E-05 0.43601 0.00022052 505.779564911523 62.403 0.32962 62.403 62.294 62.624 0 44 33 2 0 0 0 0.42249 1 13970 13970 6.7232 6.7232 1 1514900 3458 679 2201 2204 4318 4318 0.040020367233978504 DISVHLVEV 9 Unmodified _DISVHLVEV_ 0 0 0 ENST00000474154.5_1_2:37458848-37468954:+|nuORF;ENSG00000003509.16,NDUFAF7,chr2,+,I7.1,37243974,37246051|38|5.45|3|intron;ENSG00000003509|ENST00000002125|NDUFAF7 ENST00000474154.5_1_2:37458848-37468954:+|nuORF ENST00000474154.5_1_2:37458848-37468954:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 505.779482 1009.54441 0.24494 0.00012389 0.19107 9.6638E-05 0.43601 0.00022052 505.779564911523 62.403 0.32962 62.403 62.294 62.624 0 0 0 NaN 6.7232 44 33 2 NaN NaN NaN NaN 0 NaN NaN 0 1514900 3459 679 2201 2204 0.040020367233978504 DITVIAAPY 9 Unmodified _DITVIAAPY_ 0 0 0 REV__ENST00000237724.9_1_1:220369588-220445709:-|nuORF REV__ENST00000237724.9_1_1:220369588-220445709:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 481.33740234375 2 481.7633 961.512048 0.2821 0.0001359 0.15651 7.5403E-05 0.43861 0.00021131 481.7631997013313 70.808 0.20521 74.327 74.192 74.397 3.5185 23 21 2 0 0 0 0.12235 1 16402 16402 4.756 0.81161 1 47578 + 3460 18660 2202 2205 4319 4319 0.02975249320365947 DITVIAAPY 9 Unmodified _DITVIAAPY_ 0 0 0 REV__ENST00000237724.9_1_1:220369588-220445709:-|nuORF REV__ENST00000237724.9_1_1:220369588-220445709:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 481.7633 961.512048 0.16652 8.0222E-05 0.21337 0.0001028 0.37989 0.00018302 481.7630984580234 71.076 0.027618 74.542 74.529 74.557 3.466 0.10754 5.3109E-05 NaN 4.756 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 37307 + 3461 18660 2202 2205 0.02975249320365947 DIVCCSDY 8 Unmodified _DIVCCSDY_ 0 0 0 REV__ENSG00000126351.13,THRA,chr17,+,I7.1,40074542,40076870|30|4.7|6|intron REV__ENSG00000126351.13,THRA,chr17,+,I7.1,40074542,40076870|30|4.7|6|intron MSMS UPN48_class_I_Rep_1 5 459.1717529296875 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 43.062 1 46.572 46.072 47.072 3.5103 0 0 0 0.40746 1 8040 8040 0.69038 0.69038 1 + 3462 18861 2203 2206 4320 4320 -0.1308575503933298 DIVFVCGIDY 10 Unmodified _DIVFVCGIDY_ 0 0 0 REV__L1PA3_dup7853|chr11:10173148-10179353:+|1.6721599694215965|0.1198265052135718|3.8|151.0|263|2|anti-sense REV__L1PA3_dup7853|chr11:10173148-10179353:+|1.6721599694215965|0.1198265052135718|3.8|151.0|263|2|anti-sense MSMS UPN47_class_I_Rep_2 3 572.2857666015625 2 572.273175 1142.5318 NaN NaN NaN NaN NaN NaN NaN 64.598 1 67.853 67.353 68.353 3.2556 0 0 0 0.53105 1 15400 15400 10.824 0 1 + 3463 29568 2204 2207 4321 4321 -0.033767427311431675 DIVMRIMGP 9 Unmodified _DIVMRIMGP_ 0 0 0 REV__L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|2|1|sense REV__L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 516.2386474609375 2 516.272455 1030.53036 NaN NaN NaN NaN NaN NaN NaN 117.47 1 117.47 116.97 117.97 0 0 0 0 0.39428 1 29117 29117 2.0598 1.3694 1 + 3464 26783 2205 2208 4322 4322 0.016313446991034652 DIVPLFITI 9 Unmodified _DIVPLFITI_ 0 0 0 REV__L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|64|2|anti-sense REV__L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|64|2|anti-sense MSMS UPN48_class_I_Rep_1 5 515.8112182617188 2 515.812793 1029.61103 NaN NaN NaN NaN NaN NaN NaN 63.913 1 67.37 66.87 67.87 3.4578 0 0 0 0.066339 1 14426 14426 32.305 3.8186 1 + 3465 24418 2206 2209 4323 4323 0.09741272285282321 DIVQHIYKT 9 Unmodified _DIVQHIYKT_ 0 0 0 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 MSMS UPN48_class_I_Rep_3 7 558.8052368164062 2 558.806031 1115.59751 NaN NaN NaN NaN NaN NaN NaN 39.604 1 43.26 42.76 43.76 3.6557 0 0 0 0.37476 1 6947 6947 6.7232 0 1 3466 1157 2207 2210 4324 4324 0.04433414506047484 DIVSLVAWRF 10 Unmodified _DIVSLVAWRF_ 0 0 0 HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|258|2|anti-sense HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|258|2|anti-sense HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|258|2|anti-sense MSMS UPN48_class_I_Rep_2 6 603.3353881835938 2 603.337498 1204.66044 NaN NaN NaN NaN NaN NaN NaN 47.076 1 50.826 50.326 51.326 3.7494 0 0 0 0.53105 1 9270 9270 6.7232 2.7788 1 3467 8071 2208 2211 4325 4325 0.06629980294064808 DIWDWIVL 8 Unmodified _DIWDWIVL_ 0 0 0 MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.2789306640625 2 530.279118 1058.54368 0.30727 0.00016294 0.14591 7.7374E-05 0.45318 0.00024031 530.2790699558651 66.502 0.51788 69.86 69.587 70.104 3.3576 43 34 2 0 0 0 0.82752 3 15916 15916;15954;15998 8.5933 2.8329 1 95575 3468 15838 2209 2212 4326;4327;4328 4326 0.016752420743159746 DIWDWIVL 8 Unmodified _DIWDWIVL_ 0 0 0 MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MSMS UPN47_class_I_Rep_2 3 530.2793579101562 2 530.279118 1058.54368 NaN NaN NaN NaN NaN NaN NaN 66.87 1 70.133 69.633 70.633 3.2636 0 0 0 0.38547 1 16092 16092 13.508 0.97634 1 3469 15838 2209 2212 4329 4329 0.016752420743159746 DIWDWIVL 8 Unmodified _DIWDWIVL_ 0 0 0 MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MER20_dup2493|chr2:233142830-233143030:-|2.212139163054544|0.0871793413697776|4.67|151.0|14|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.2792358398438 2 530.279118 1058.54368 0.37665 0.00019973 -0.031671 -1.6795E-05 0.34498 0.00018293 530.2791173095331 66.906 0.61323 70.097 69.743 70.357 3.1914 60 46 2 0 0 0 0.82752 1 16190 16190 13.508 3.434 1 150340 3470 15838 2209 2212 4330 4330 0.016752420743159746 DIWKRQNYQSE 11 Unmodified _DIWKRQNYQSE_ 0 0 0 L1ME1_dup11402|chr6:37030465-37031149:-|1.0163547903811243|0.3304987741625443|1.62|151.0|23|3|sense L1ME1_dup11402|chr6:37030465-37031149:-|1.0163547903811243|0.3304987741625443|1.62|151.0|23|3|sense L1ME1_dup11402|chr6:37030465-37031149:-|1.0163547903811243|0.3304987741625443|1.62|151.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 489.57177734375 3 489.572274 1465.69499 NaN NaN NaN NaN NaN NaN NaN 40.717 1 44.389 43.889 44.889 3.6719 0 0 0 0.38417 1 8104 8104 0.50596 0 1 3471 12178 2210 2213 4331 4331 -0.019228483557526488 DIYFFYIY 8 Unmodified _DIYFFYIY_ 0 0 0 L1MB8_dup7804|chr9:19365064-19366319:+|1.1297047495716537|0.3089219928970423|1.87|151.0|23|2|sense L1MB8_dup7804|chr9:19365064-19366319:+|1.1297047495716537|0.3089219928970423|1.87|151.0|23|2|sense L1MB8_dup7804|chr9:19365064-19366319:+|1.1297047495716537|0.3089219928970423|1.87|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.2881469726562 2 572.273501 1142.53245 0.34522 0.00019756 1.5949 0.00091271 1.9401 0.0011103 572.2737884610888 64.592 0.072304 67.948 67.911 67.983 3.3557 8 6 2 0 0 0 0.82752 1 15352 15352 14.582 0.67564 1 33214 3472 11032 2211 2214 4332 4332 -0.03311580019817484 DIYQRALNL 9 Unmodified _DIYQRALNL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000496144.5_1_8:100515159-100589873:+|nuORF ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_1 2 553.30322265625 2 553.303655 1104.59276 0.4145 0.00022934 -1.1938 -0.00066051 -0.77927 -0.00043117 553.3030104435954 58.112 0.7699 61.549 61.096 61.866 3.437 72 48 2 0 0 0 0.14216 2 13402 13358;13402 26.268 8.1218 1 114780 3473 2763 2212 2215 4333;4334 4334 0.04464530363270569 DIYQRALNL 9 Unmodified _DIYQRALNL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000496144.5_1_8:100515159-100589873:+|nuORF ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_2 3 553.3040771484375 2 553.303655 1104.59276 0.51424 0.00028453 -1.8258 -0.0010102 -1.3115 -0.00072567 553.3028324408047 58.224 0.63108 61.505 61.277 61.908 3.2818 48 38 2 0 0 0 0.14216 2 13486 13486;13498 26.268 5.8145 1 115750 3474 2763 2212 2215 4335;4336 4335 0.04464530363270569 DIYQRALNL 9 Unmodified _DIYQRALNL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000496144.5_1_8:100515159-100589873:+|nuORF ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_3 4 553.3035278320312 2 553.303655 1104.59276 0.3356 0.00018569 -0.94713 -0.00052405 -0.61153 -0.00033836 553.3032832087447 58.34 0.58672 61.506 61.267 61.854 3.1658 56 38 2 0 0 0 0.088679 1 13564 13564 36.506 5.2379 1 145730 3475 2763 2212 2215 4337 4337 0.04464530363270569 DIYSKKTL 8 Unmodified _DIYSKKTL_ 0 0 0 ENST00000483847.1_1_3:47712102-47719818:-|nuORF;ENSG00000173473|ENST00000254480|SMARCC1 ENST00000483847.1_1_3:47712102-47719818:-|nuORF ENST00000483847.1_1_3:47712102-47719818:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 484.2760009765625 2 484.276575 966.538597 -0.17714 -8.5787E-05 0.022888 1.1084E-05 -0.15426 -7.4703E-05 484.27654723977366 27.262 0.4766 30.761 30.529 31.006 3.4986 70 40 2 0 0 0 0.82752 1 4060 4060 12.241 12.241 1 89914 3476 4630 2213 2216 4338 4338 0.05398938211715176 DIYSKKTL 8 Unmodified _DIYSKKTL_ 0 0 0 ENST00000483847.1_1_3:47712102-47719818:-|nuORF;ENSG00000173473|ENST00000254480|SMARCC1 ENST00000483847.1_1_3:47712102-47719818:-|nuORF ENST00000483847.1_1_3:47712102-47719818:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 484.27581787109375 2 484.276575 966.538597 -0.53738 -0.00026024 0.23869 0.00011559 -0.29869 -0.00014465 484.27660292270485 27.487 0.6161 30.829 30.591 31.208 3.3422 84 51 2 0 0 0 0.82752 1 4221 4221 6.7232 6.7232 1 61684 3477 4630 2213 2216 4339 4339 0.05398938211715176 DIYYSLNIY 9 Unmodified _DIYYSLNIY_ 0 0 0 ENSG00000172139|ENST00000305815|SLC9C1 ENSG00000172139|ENST00000305815|SLC9C1 ENSG00000172139|ENST00000305815|SLC9C1 MULTI-MSMS UPN47_class_I_Rep_1 2 582.28466796875 2 582.284597 1162.55464 0.39386 0.00022934 -0.15771 -9.1831E-05 0.23615 0.00013751 582.2844546655886 77.145 0.74579 80.56 80.338 81.084 3.4149 119 65 2 0 0 0 0.23293 1 19191 19191 18.146 0 1 271470 3478 4561 2214 2217 4340 4340 -0.02013400342048044 DIYYSLNIY 9 Unmodified _DIYYSLNIY_ 0 0 0 ENSG00000172139|ENST00000305815|SLC9C1 ENSG00000172139|ENST00000305815|SLC9C1 ENSG00000172139|ENST00000305815|SLC9C1 MULTI-MSMS UPN47_class_I_Rep_3 4 582.284912109375 2 582.284597 1162.55464 0.46555 0.00027108 -0.091642 -5.3362E-05 0.37391 0.00021772 582.2844435168562 77.521 0.76833 80.79 80.394 81.162 3.269 169 79 3 0 0 0 0.13631 2 19319 19245;19319 26.884 0 1 275670 3479 4561 2214 2217 4341;4342 4342 -0.02013400342048044 DKAKIRQV 8 Unmodified _DKAKIRQV_ 0 0 0 REV__nc|ENSG00000174437|P16615-5|ATP2A2 REV__nc|ENSG00000174437|P16615-5|ATP2A2 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2949523925781 2 479.295633 956.576714 -0.37149 -0.00017805 0.32766 0.00015705 -0.04383 -2.1008E-05 479.2954831199032 16.757 0.7016 20.279 20.051 20.752 3.5224 116 79 2 0 0 0 0.82752 1 1160 1160 4.756 0 1 47954 + 3480 20524 2215 2218 4343 4343 0.09668868917037798 DKAKKAKQ 8 Unmodified _DKAKKAKQ_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MULTI-SECPEP UPN47_class_I_Rep_1 2 458.87603759765625 2 458.782359 915.550165 -0.42225 -0.00019372 -0.16097 -7.3849E-05 -0.58322 -0.00026757 458.7822463129237 15.075 0.26128 18.55 18.42 18.681 3.475 42 30 2 0 0 0 0.72333 1 716 716 2.3027 0.4585 1 40709 + 3481 18977 2216 2219 4344 4344 0.08901180025702615 DKAKKAKQ 8 Unmodified _DKAKKAKQ_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MULTI-SECPEP UPN47_class_I_Rep_2 3 458.8759460449219 2 458.782359 915.550165 -0.45928 -0.00021071 -0.36513 -0.00016752 -0.82441 -0.00037823 458.78210797601275 15.157 0.25734 18.544 18.44 18.697 3.3864 39 27 2 0 0 0 0.72333 1 749 749 2.3027 0.4585 1 28026 + 3482 18977 2216 2219 4345 4345 0.08901180025702615 DKAKKAKQ 8 Unmodified _DKAKKAKQ_ 0 0 0 REV__nc|ENSG00000289750|Q9H1K0-2|RBSN REV__nc|ENSG00000289750|Q9H1K0-2|RBSN MULTI-SECPEP UPN47_class_I_Rep_3 4 458.87615966796875 2 458.782359 915.550165 -0.99977 -0.00045868 -0.13025 -5.9758E-05 -1.13 -0.00051844 458.78225787889545 15.262 0.28269 18.628 18.462 18.745 3.3659 43 31 2 0 0 0 0.72333 1 742 742 2.3027 0.4585 1 36782 + 3483 18977 2216 2219 4346 4346 0.08901180025702615 DKANKLRI 8 Unmodified _DKANKLRI_ 0 0 0 REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|98|3|sense REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|98|3|sense MSMS UPN47_class_I_Rep_2 3 479.2954406738281 2 479.295633 956.576714 NaN NaN NaN NaN NaN NaN NaN 17.033 1 20.42 19.92 20.92 3.387 0 0 0 0.40625 1 1197 1197 2.3027 0 1 + 3484 23875 2217 2220 4347 4347 0.09668868917015061 DKANKLRI 8 Unmodified _DKANKLRI_ 0 0 0 REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|98|3|sense REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|98|3|sense MSMS UPN47_class_I_Rep_2 3 479.2954406738281 2 479.295633 956.576714 NaN NaN NaN NaN NaN NaN NaN 17.167 1 20.554 20.054 21.054 3.387 0 0 0 0.40625 1 1232 1232 2.3027 0 1 + 3485 23875 2217 2220 4348 4348 0.09668868917015061 DKANKRLL 8 Unmodified _DKANKRLL_ 0 0 0 ENST00000427378.1_1_7:134813580-134814228:+|nuORF ENST00000427378.1_1_7:134813580-134814228:+|nuORF ENST00000427378.1_1_7:134813580-134814228:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 479.29608154296875 2 479.295633 956.576714 -0.37149 -0.00017805 0.32766 0.00015705 -0.04383 -2.1008E-05 479.2954831199032 16.757 0.7016 20.279 20.051 20.752 3.5224 116 79 2 0 0 0 0.82752 2 1119 1119;1151 2.3027 0 1 47954 3486 6710 2218 2221 4349;4350 4349 0.09668868917037798 DKAQKLIQ 8 Unmodified _DKAQKLIQ_ 0 0 0 REV__L1MB7_dup15148|chr11:86056158-86057179:+|3.07345128195041|0.0669436120974999|5.52|151.0|18|2|sense REV__L1MB7_dup15148|chr11:86056158-86057179:+|3.07345128195041|0.0669436120974999|5.52|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 472.28204345703125 2 472.282192 942.549831 NaN NaN NaN NaN NaN NaN NaN 40.36 1 44.026 43.526 44.526 3.6668 0 0 0 0.40625 1 7994 7994 2.3027 0 1 + 3487 26147 2219 2222 4351 4351 0.0762576030585933 DKCIGQPA 8 Unmodified _DKCIGQPA_ 0 0 0 REV__nc|ENSG00000119866|Q9H165-3|BCL11A REV__nc|ENSG00000119866|Q9H165-3|BCL11A MSMS UPN48_class_I_Rep_2 6 416.2122497558594 2 416.205096 830.395638 NaN NaN NaN NaN NaN NaN NaN 66.355 1 69.841 69.341 70.341 3.4866 0 0 0 0.40604 1 15154 15154 2.5775 0 1 + 3488 18689 2220 2223 4352 4352 -0.02634392451182066 DKFEKRWQR 9 Unmodified _DKFEKRWQR_ 0 0 0 REV__ERV3-16A3_I-int_dup2111|chr5:31500296-31503382:+|1.9751469454462216|0.1526329726634372|3.69|151.0|3|1|sense REV__ERV3-16A3_I-int_dup2111|chr5:31500296-31503382:+|1.9751469454462216|0.1526329726634372|3.69|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 646.8450317382812 2 646.846553 1291.67855 NaN NaN NaN NaN NaN NaN NaN 65.188 1 68.696 68.196 69.196 3.5077 0 0 0 0.38916 1 14712 14712 3.2813 0.54611 1 + 3489 23245 2221 2224 4353 4353 0.04438115268794718 DKFHLLTF 8 Unmodified _DKFHLLTF_ 0 0 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|1|1|sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 510.7803039550781 2 510.779285 1019.54402 NaN NaN NaN NaN NaN NaN NaN 52.956 1 56.515 56.015 57.015 3.5585 0 0 0 0.40472 1 11824 11824 4.3292 1.334 1 + 3490 32517 2222 2225 4354 4354 0.0350266179417531 DKGRLREFV 9 Unmodified _DKGRLREFV_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3163452148438 2 560.317097 1118.61964 0.051985 2.9128E-05 0.34599 0.00019387 0.39798 0.00022299 560.3171615733672 41.666 0.51033 45.032 44.692 45.202 3.3655 53 39 2 0 0 0 0.49026 1 8385 8385 1.6526 1.6526 1 64927 3491 11900 2223 2226 4355 4355 0.06507638974449037 DKGRLREFV 9 Unmodified _DKGRLREFV_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.3155517578125 2 560.317097 1118.61964 0.049702 2.7849E-05 0.10269 5.754E-05 0.15239 8.5389E-05 560.3170727773876 41.635 0.42957 44.872 44.85 45.279 3.2372 48 35 2 0 0 0 0.49026 1 8537 8537 1.6526 0 1 43733 3492 11900 2223 2226 4356 4356 0.06507638974449037 DKHKIKIG 8 Unmodified _DKHKIKIG_ 0 0 0 REV__L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|58|2|sense REV__L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|58|2|sense MSMS UPN48_class_I_Rep_2 6 469.7919616699219 2 469.792727 937.5709 NaN NaN NaN NaN NaN NaN NaN 57.51 1 61.024 60.524 61.524 3.5142 0 0 0 0.40753 1 12445 12445 0.6015 0 1 + 3493 25011 2224 2227 4357 4357 0.09961770405357129 DKIEKLLTQ 9 Unmodified _DKIEKLLTQ_ 0 0 0 REV__L1MB3_dup498|chr1:55117771-55119589:+|3.330119463095452|0.199129222332398|4.06|151.0|39|3|sense REV__L1MB3_dup498|chr1:55117771-55119589:+|3.330119463095452|0.199129222332398|4.06|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.3211059570312 2 544.321514 1086.62847 -0.39744 -0.00021634 -0.30771 -0.00016749 -0.70515 -0.00038383 544.3214081054433 16.881 0.98203 20.243 19.847 20.829 3.3619 204 111 2 0 0 0 0.47763 1 1194 1194 2.9952 0 1 102120 + 3494 25893 2225 2228 4358 4358 0.08862567820256118 DKIRKLYLY 9 Unmodified _DKIRKLYLY_ 0 0 0 ENST00000460583.1_1_1:147119227-147122061:-|nuORF;ENSG00000162836|ENST00000583509|ACP6 ENST00000460583.1_1_1:147119227-147122061:-|nuORF ENST00000460583.1_1_1:147119227-147122061:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3607788085938 2 606.360973 1210.70739 0.32544 0.00019734 -0.10783 -6.5385E-05 0.21761 0.00013195 606.3607847542232 29.134 0.084066 29.134 29.062 29.146 0 11 7 2 0 0 0 0.48643 1 4564 4564 2.0598 0 1 137000 3495 3965 2226 2229 4359 4359 0.11046839845221257 DKIRKLYLY 9 Unmodified _DKIRKLYLY_ 0 0 0 ENST00000460583.1_1_1:147119227-147122061:-|nuORF;ENSG00000162836|ENST00000583509|ACP6 ENST00000460583.1_1_1:147119227-147122061:-|nuORF ENST00000460583.1_1_1:147119227-147122061:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 606.3604125976562 2 606.360973 1210.70739 0.52869 0.00032058 -0.28646 -0.0001737 0.24223 0.00014688 606.3605077642968 109.37 0.50051 112.97 112.92 113.42 3.6046 96 63 2 0 0 0 0.48643 1 27069 27069 2.0598 0 1 1584100 3496 3965 2226 2229 4360 4360 0.11046839845221257 DKKATVLQ 8 Unmodified _DKKATVLQ_ 0 0 0 L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|94|3|anti-sense L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|94|3|anti-sense L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|94|3|anti-sense MSMS UPN47_class_I_Rep_3 4 451.7685852050781 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 20.308 1 23.657 23.157 24.157 3.3496 0 0 0 0.40659 1 2070 2070 1.8442 0 1 3497 13229 2227 2230 4361 4361 0.0685807141450141 DKKGRAIN 8 Unmodified _DKKGRAIN_ 0 0 0 REV__ENSG00000135976|ENST00000420699|ANKRD36 REV__ENSG00000135976|ENST00000420699|ANKRD36 MULTI-MSMS UPN47_class_I_Rep_1 2 451.2630310058594 2 451.264333 900.514114 -0.39683 -0.00017908 -0.5454 -0.00024612 -0.94223 -0.0004252 451.26388722453345 26.352 0.65704 30.114 29.783 30.44 3.7624 74 59 2 0 0 0 0.82752 1 3828 3828 0.69038 0 1 75624 + 3498 19166 2228 2231 4362 4362 0.0598772284882898 DKKHKRKL 8 Unmodified _DKKHKRKL_ 0 0 0 REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF MSMS UPN47_class_I_Rep_2 3 526.7901611328125 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 58.268 1 61.55 61.05 62.05 3.2818 0 0 0 0.40753 1 13476 13476 0.6015 0 1 + 3499 22240 2229 2232 4363 4363 0.1376823945365686 DKKHLPNL 8 Unmodified _DKKHLPNL_ 0 0 0 L1ME3_dup8332|chr19:6049887-6051869:+|1.0063922232092073|0.0333453312549413|4.92|151.0|62|3|sense L1ME3_dup8332|chr19:6049887-6051869:+|1.0063922232092073|0.0333453312549413|4.92|151.0|62|3|sense L1ME3_dup8332|chr19:6049887-6051869:+|1.0063922232092073|0.0333453312549413|4.92|151.0|62|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.7823181152344 2 482.782359 963.550165 -0.19197 -9.268E-05 -0.68785 -0.00033208 -0.87982 -0.00042476 482.7819460456776 16.424 0.48425 19.81 19.532 20.016 3.3864 105 60 2 0 0 0 0.82752 1 998 998 2.3027 0 1 44757 3500 12609 2230 2233 4364 4364 0.06693180025683887 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS UPN46_class_I_Rep_3 1 450.28143310546875 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 50.473 1 50.473 49.973 50.973 0 0 0 0 0.38444 1 10666 10666 13.906 0 1 + 3501 21647 2231 2234 4365 4365 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS UPN46_class_I_Rep_3 1 450.2817077636719 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 50.663 1 50.663 50.163 51.163 0 0 0 0 0.39615 1 10715 10715 9.3831 1.2276 1 + 3502 21647 2231 2234 4366 4366 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.28143310546875 2 450.28166 898.548768 -0.23035 -0.00010372 -1.3846 -0.00062345 -1.6149 -0.00072718 450.281143590149 44.778 0.48339 48.478 48.242 48.726 3.6999 49 32 2 0 0 0 0.82752 1 9331 9331 9.3831 1.2276 1 44377 + 3503 21647 2231 2234 4367 4367 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS UPN47_class_I_Rep_2 3 450.28106689453125 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 45.056 1 48.411 47.911 48.911 3.3556 0 0 0 0.40292 1 9457 9457 6.7232 0.99131 1 + 3504 21647 2231 2234 4368 4368 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS UPN47_class_I_Rep_2 3 450.28076171875 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 45.283 1 48.637 48.137 49.137 3.3534 0 0 0 0.40292 1 9527 9527 6.7232 0.99131 1 + 3505 21647 2231 2234 4369 4369 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS UPN47_class_I_Rep_3 4 450.2803039550781 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 45.221 1 48.465 47.965 48.965 3.2441 0 0 0 0.39615 1 9560 9560 9.3831 1.2276 1 + 3506 21647 2231 2234 4370 4370 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MSMS UPN47_class_I_Rep_3 4 450.2813415527344 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 45.306 1 48.55 48.05 49.05 3.2441 0 0 0 0.39615 1 9586 9586 9.3831 1.2276 1 + 3507 21647 2231 2234 4371 4371 0.09543545936946884 DKKIPVTV 8 Unmodified _DKKIPVTV_ 0 0 0 REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF REV__ENST00000295324.3_1_2:37873702-37873852:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 450.28166 898.548768 -0.23035 -0.00010372 -1.3846 -0.00062345 -1.6149 -0.00072718 450.281143590149 44.778 0.48339 48.478 48.242 48.726 3.6999 0 0 NaN 9.3831 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 44377 + 3508 21647 2231 2234 0.09543545936946884 DKKKARFER 9 Unmodified _DKKKARFER_ 0 0 0 ENST00000335730.6_1_18:44089558-44181581:-|nuORF;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1;nc|ENSG00000167210|Q8IVV2-4|LOXHD1;nc|ENSG00000167210|Q8IVV2-5|LOXHD1 ENST00000335730.6_1_18:44089558-44181581:-|nuORF ENST00000335730.6_1_18:44089558-44181581:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 589.3435668945312 2 589.343646 1176.67274 0.54083 0.00031873 -1.2825 -0.00075582 -0.74165 -0.00043709 589.3427411325795 84.168 0.35182 87.591 87.52 87.872 3.4232 68 45 2 0 0 0 0.5015 1 21050 21050 0.45834 0 1 92512 3509 4292 2232 2235 4372 4372 0.09147016757128767 DKKKIVYA 8 Unmodified _DKKKIVYA_ 0 0 0 REV__L1ME2_dup7907|chr10:21773141-21773834:-|1.0585906559161524|0.0224150948028564|5.56|151.0|24|3|sense REV__L1ME2_dup7907|chr10:21773141-21773834:-|1.0585906559161524|0.0224150948028564|5.56|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 482.7958068847656 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 77.232 1 77.232 76.732 77.732 0 0 0 0 0.40738 1 18046 18046 0.79363 0 1 + 3510 27887 2233 2236 4373 4373 0.09207234828272703 DKKRLVNGY 9 Unmodified _DKKRLVNGY_ 0 0 0 L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|17|1|sense L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|17|1|sense L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 546.8103637695312 2 546.811648 1091.60874 NaN NaN NaN NaN NaN NaN NaN 81.146 1 81.146 80.646 81.646 0 0 0 0 0.39598 1 19149 19149 1.6526 0.85899 1 3511 9665 2234 2237 4374 4374 0.06660236600191638 DKKWVINVL 9 Unmodified _DKKWVINVL_ 0 0 0 REV__L1MEf_dup11054|chr18:79146891-79149800:+|2.4965531962434366|0.0730051322569509|5.1|151.0|33|1|sense REV__L1MEf_dup11054|chr18:79146891-79149800:+|2.4965531962434366|0.0730051322569509|5.1|151.0|33|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 558.3063354492188 2 557.834591 1113.65463 0.45956 0.00025636 -0.26069 -0.00014542 0.19888 0.00011094 557.8345080611542 48.566 0.74559 52.09 51.738 52.484 3.5239 85 50 2 0 0 0 0.47197 1 9828 9828 3.5965 0.31518 1 250010 + 3512 28597 2235 2238 4375 4375 0.10234881782434968 DKLAPLRARG 10 Unmodified _DKLAPLRARG_ 0 0 0 REV__ENSG00000197446|ENST00000331105|CYP2F1 REV__ENSG00000197446|ENST00000331105|CYP2F1 MSMS UPN47_class_I_Rep_2 3 548.8349609375 2 548.832914 1095.65128 NaN NaN NaN NaN NaN NaN NaN 115.9 1 119.4 118.9 119.9 3.4965 0 0 0 0.53105 1 28278 28278 3.2813 0.70383 1 + 3513 21084 2236 2239 4376 4376 0.10727631728377673 DKLDDVIRSI 10 Unmodified _DKLDDVIRSI_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MSMS UPN48_class_I_Rep_2 6 587.3268432617188 2 587.327328 1172.6401 NaN NaN NaN NaN NaN NaN NaN 61.979 1 65.453 64.953 65.953 3.4738 0 0 0 0.53105 1 13812 13812 1.1933 0.12188 1 + 3514 18570 2237 2240 4377 4377 0.060687648435987285 DKLEQIVKN 9 Unmodified _DKLEQIVKN_ 0 0 0 REV__L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|95|2|sense REV__L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|95|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 543.811279296875 2 543.811313 1085.60807 0.01113 6.0528E-06 -0.018778 -1.0211E-05 -0.0076473 -4.1587E-06 543.8112167339688 37.553 0.45539 40.952 40.759 41.214 3.3988 60 34 2 0 0 0 0.45441 1 7218 7218 4.897 0.70751 1 74486 + 3515 29076 2238 2241 4378 4378 0.06869397160471635 DKLERVETV 9 Unmodified _DKLERVETV_ 0 0 0 REV__ENSG00000126777|ENST00000395314|KTN1 REV__ENSG00000126777|ENST00000395314|KTN1 MULTI-MSMS UPN47_class_I_Rep_2 3 544.8008422851562 2 544.800946 1087.58734 0.014201 7.7367E-06 -0.045487 -2.4781E-05 -0.031286 -1.7045E-05 544.8008843851267 38.624 1.5803 42.012 41.637 43.217 3.3879 265 106 4 0 0 0 0.26468 1 7699 7699 16.149 0 1 1518800 + 3516 18865 2239 2242 4379 4379 0.04704806780796389 DKLGHVRYI 9 Unmodified _DKLGHVRYI_ 0 0 0 REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|51|3|sense REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|51|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.814697265625 2 550.81419 1099.61383 0.48296 0.00026602 -0.084841 -4.6732E-05 0.39811 0.00021929 550.814019153057 45.807 1.1054 49.323 48.839 49.944 3.5162 142 75 3 0 0 0 0.46869 1 9020 9020 3.9444 1.8846 1 401500 + 3517 27902 2240 2243 4380 4380 0.06800540462791105 DKLLHYQF 8 Unmodified _DKLLHYQF_ 0 0 0 REV__L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|54|1|anti-sense REV__L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.2824096679688 2 532.282192 1062.54983 0.34571 0.00018402 -0.82178 -0.00043742 -0.47607 -0.0002534 532.2815815629234 45.438 0.61501 49.196 48.825 49.44 3.7579 73 49 2 0 0 0 0.82752 1 8762 8762 8.5933 1.304 1 142030 + 3518 24375 2241 2244 4381 4381 0.02105760305835247 DKLNKITA 8 Unmodified _DKLNKITA_ 0 0 0 REV__HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|29|3|sense REV__HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|29|3|sense MSMS UPN47_class_I_Rep_2 3 451.7685852050781 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 20.139 1 23.535 23.035 24.035 3.3963 0 0 0 0.40753 1 2035 2035 0.6015 0 1 + 3519 23879 2242 2245 4382 4382 0.06858071414490041 DKLQPTCEL 9 Unmodified _DKLQPTCEL_ 0 0 0 REV__L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|98|3|sense REV__L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|98|3|sense MSMS UPN48_class_I_Rep_1 5 524.0126342773438 2 523.762975 1045.5114 NaN NaN NaN NaN NaN NaN NaN 73.994 1 77.475 76.975 77.975 3.4812 0 0 0 0.39598 1 17469 17469 1.6526 0.85899 1 + 3520 29220 2243 2246 4383 4383 -0.009539133909811426 DKLRQLIF 8 Unmodified _DKLRQLIF_ 0 0 0 REV__MER4B_dup1128|chr10:76335438-76336057:-|1.2576172303621496|0.002818547377742|8.8|146.0|21|1|anti-sense REV__MER4B_dup1128|chr10:76335438-76336057:-|1.2576172303621496|0.002818547377742|8.8|146.0|21|1|anti-sense MSMS UPN48_class_I_Rep_1 5 516.8140258789062 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 70.227 1 73.687 73.187 74.187 3.4598 0 0 0 0.4044 1 16350 16350 4.756 0.81161 1 + 3521 31351 2244 2247 4384 4384 0.09822326093899392 DKLYGKFV 8 Unmodified _DKLYGKFV_ 0 0 0 REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 485.2734680175781 2 485.273835 968.533118 0.25659 0.00012451 -0.45298 -0.00021982 -0.1964 -9.5306E-05 485.2734370366203 108.75 0.48876 112.38 112.26 112.75 3.6355 59 39 2 0 0 0 0.82752 1 26781 26781 7.9102 0 1 5960000 + 3522 20062 2245 2248 4385 4385 0.04759259419904538 DKLYGKFV 8 Unmodified _DKLYGKFV_ 0 0 0 REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 485.273835 968.533118 0.42246 0.00020501 -0.96317 -0.0004674 -0.54071 -0.00026239 485.27325964254004 108.77 0.51133 112.3 112.15 112.66 3.5333 -0.077385 -0.0001632 NaN 7.9102 103 57 2 NaN NaN NaN NaN 0 NaN NaN 0 7103200 + 3523 20062 2245 2248 0.04759259419904538 DKLYGKFV 8 Unmodified _DKLYGKFV_ 0 0 0 REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 485.273835 968.533118 0.20147 9.7768E-05 -0.8181 -0.000397 -0.61663 -0.00029924 485.2733716146092 108.76 0.51007 112.3 112.17 112.68 3.5382 -0.080679 -2.2403E-05 NaN 7.9102 95 55 2 NaN NaN NaN NaN 0 NaN NaN 0 7777500 + 3524 20062 2245 2248 0.04759259419904538 DKLYGKFV 8 Unmodified _DKLYGKFV_ 0 0 0 REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 485.273835 968.533118 0.13436 6.5203E-05 -0.59949 -0.00029092 -0.46512 -0.00022571 485.27349590754574 108.78 0.45966 112.41 112.26 112.72 3.6321 0.028655 0.00018977 NaN 7.9102 81 52 2 NaN NaN NaN NaN 0 NaN NaN 0 6486600 + 3525 20062 2245 2248 0.04759259419904538 DKLYGKFV 8 Unmodified _DKLYGKFV_ 0 0 0 REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 485.273835 968.533118 0.24872 0.0001207 -0.97675 -0.00047399 -0.72803 -0.0003533 485.27332461375954 108.78 0.4818 112.46 112.29 112.77 3.6746 0.077147 -0.00017638 NaN 7.9102 86 51 2 NaN NaN NaN NaN 0 NaN NaN 0 7748100 + 3526 20062 2245 2248 0.04759259419904538 DKLYGKFV 8 Unmodified _DKLYGKFV_ 0 0 0 REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF REV__ENST00000496328.1_1_10:114181742-114186129:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 485.273835 968.533118 0.23136 0.00011227 -0.61524 -0.00029856 -0.38388 -0.00018629 485.27354516037514 108.76 0.29907 112.43 112.3 112.6 3.6751 0.051475 0.00017448 NaN 7.9102 48 32 2 NaN NaN NaN NaN 0 NaN NaN 0 6723800 + 3527 20062 2245 2248 0.04759259419904538 DKMKLFPV 8 Unmodified _DKMKLFPV_ 0 0 0 nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1 nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1 nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1 MULTI-MSMS UPN47_class_I_Rep_2 3 489.279541015625 2 489.278063 976.541574 -0.12273 -6.0048E-05 4.2588 0.0020837 4.136 0.0020237 489.28053651319107 39.361 0.10252 42.74 42.671 42.773 3.3785 6 4 2 0 0 0 0.82752 1 7702 7702 2.5775 0.51773 1 27852 3528 5547 2246 2249 4386 4386 0.05236490064885402 DKNATAYFE 9 Unmodified _DKNATAYFE_ 0 0 0 ENST00000399586.2_1_X:74960734-74966719:-|nuORF ENST00000399586.2_1_X:74960734-74966719:-|nuORF ENST00000399586.2_1_X:74960734-74966719:-|nuORF MSMS UPN48_class_I_Rep_2 6 529.7442626953125 2 529.743096 1057.47164 NaN NaN NaN NaN NaN NaN NaN 113.38 1 117.05 116.55 117.55 3.663 0 0 0 0.38916 1 27058 27058 3.2813 0.97858 1 3529 6590 2247 2250 4387 4387 -0.05479717070056722 DKNFFAYA 8 Unmodified _DKNFFAYA_ 0 0 0 ENSG00000216937|ENST00000639629|CCDC7 ENSG00000216937|ENST00000639629|CCDC7 ENSG00000216937|ENST00000639629|CCDC7 MSMS UPN48_class_I_Rep_2 6 488.23236083984375 2 488.232168 974.449782 NaN NaN NaN NaN NaN NaN NaN 73.427 1 77.005 76.505 77.505 3.5779 0 0 0 0.40472 1 17239 17239 4.3292 0.38484 1 3530 5640 2248 2251 4388 4388 -0.03846477027968831 DKNKNITV 8 Unmodified _DKNKNITV_ 0 0 0 REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|57|2|sense REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 466.2638244628906 2 466.263999 930.513445 -0.34915 -0.00016279 -0.011841 -5.5211E-06 -0.36099 -0.00016832 466.2639052879132 30.341 1.57 34.086 33.726 35.296 3.7449 244 121 3 0 0 0 0.82752 1 5111 5111 10.074 0 1 1328800 + 3531 23759 2249 2252 4389 4389 0.04540883409129037 DKQRALAV 8 Unmodified _DKQRALAV_ 0 0 0 REV__ENSG00000266074|ENST00000675386|BAHCC1 REV__ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MSMS UPN47_class_I_Rep_1 2 450.765869140625 2 450.766709 899.518865 -0.39175 -0.00017659 -0.085425 -3.8507E-05 -0.47717 -0.00021509 450.7665539244433 27.967 0.73499 31.733 31.418 32.153 3.7662 125 59 3 0 0 0 0.82752 2 4181 4181;4297 7.2892 0 1 239980 + 3532 21408 2250 2253 4390;4391 4390 0.06508606991610577 DKQRALAV 8 Unmodified _DKQRALAV_ 0 0 0 REV__ENSG00000266074|ENST00000675386|BAHCC1 REV__ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MSMS UPN47_class_I_Rep_2 3 451.2682189941406 2 450.766709 899.518865 -0.5496 -0.00024774 0.028041 1.264E-05 -0.52156 -0.0002351 450.7665522025698 28.107 0.87535 31.606 31.296 32.172 3.4986 153 73 3 0 0 0 0.82752 1 4276 4276 11.64 0 1 202630 + 3533 21408 2250 2253 4392 4392 0.06508606991610577 DKQRALAV 8 Unmodified _DKQRALAV_ 0 0 0 REV__ENSG00000266074|ENST00000675386|BAHCC1 REV__ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MSMS UPN47_class_I_Rep_3 4 450.76556396484375 2 450.766709 899.518865 -0.88722 -0.00039993 0.19662 8.8629E-05 -0.6906 -0.0003113 450.76662689038193 28.336 0.80579 31.669 31.358 32.163 3.3338 150 69 3 0 0 0 0.82752 3 4367 4367;4474;4551 11.64 0 1 192770 + 3534 21408 2250 2253 4393;4394;4395 4393 0.06508606991610577 DKRFAECIE 9 Unmodified _DKRFAECIE_ 0 0 0 REV__nc|ENSG00000145321|P02774-2|GC REV__nc|ENSG00000145321|P02774-2|GC MSMS UPN47_class_I_Rep_3 4 555.7647705078125 2 555.766049 1109.51754 NaN NaN NaN NaN NaN NaN NaN 28.177 1 31.511 31.011 32.011 3.3337 0 0 0 0.38299 1 4382 4382 4.756 2.1785 1 + + 3535 17468 2251 2254 4396 4396 -0.03283395159473912 DKRQGIIK 8 Unmodified _DKRQGIIK_ 0 0 0 REV__L1MDb_dup212|chr3:60667205-60668378:-|1.2623599977953783|0.0958916498924188|3.72|150.0|14|2|sense REV__L1MDb_dup212|chr3:60667205-60668378:-|1.2623599977953783|0.0958916498924188|3.72|150.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2957763671875 2 479.295633 956.576714 -0.37149 -0.00017805 0.32766 0.00015705 -0.04383 -2.1008E-05 479.2954831199032 16.757 0.7016 20.279 20.051 20.752 3.5224 116 79 2 0 0 0 0.82752 1 1198 1198 0.69038 0 1 47954 + 3536 27553 2252 2255 4397 4397 0.09668868917049167 DKRRLHVGL 9 Unmodified _DKRRLHVGL_ 0 0 0 REV__nc|ENSG00000186866|Q9Y2G5-2|POFUT2 REV__nc|ENSG00000186866|Q9Y2G5-2|POFUT2 MSMS UPN46_class_I_Rep_3 1 547.7371215820312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 111.26 1 111.26 110.76 111.76 0 0 0 0 0.39326 1 27424 27424 2.3027 0.65011 1 + 3537 20908 2253 2256 4398 4398 0.10899051448291175 DKRRLHVGL 9 Unmodified _DKRRLHVGL_ 0 0 0 REV__nc|ENSG00000186866|Q9Y2G5-2|POFUT2 REV__nc|ENSG00000186866|Q9Y2G5-2|POFUT2 MSMS UPN47_class_I_Rep_1 2 547.3324584960938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 72.481 1 75.861 75.361 76.361 3.3799 0 0 0 0.40038 1 17738 17738 0.6015 0 1 + 3538 20908 2253 2256 4399 4399 0.10899051448291175 DKRRLHVGL 9 Unmodified _DKRRLHVGL_ 0 0 0 REV__nc|ENSG00000186866|Q9Y2G5-2|POFUT2 REV__nc|ENSG00000186866|Q9Y2G5-2|POFUT2 MSMS UPN48_class_I_Rep_3 7 547.3328857421875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 75.016 1 78.582 78.082 79.082 3.5659 0 0 0 0.40038 1 17598 17598 0.6015 0.076735 1 + 3539 20908 2253 2256 4400 4400 0.10899051448291175 DKRRWRKIPKR 11 Unmodified _DKRRWRKIPKR_ 0 0 0 nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 MSMS UPN48_class_I_Rep_2 6 513.6544799804688 3 513.654937 1537.94298 NaN NaN NaN NaN NaN NaN NaN 75.506 1 79.108 78.608 79.608 3.6011 0 0 0 0.38417 1 17809 17809 0.50596 0.41111 1 3540 4380 2254 2257 4401 4401 0.19552789813201343 DKRVALKTT 9 Unmodified _DKRVALKTT_ 0 0 0 REV__L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|12|1|sense REV__L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 516.3145141601562 2 516.314023 1030.61349 NaN NaN NaN NaN NaN NaN NaN 97.538 1 97.538 97.038 98.038 0 0 0 0 0.38478 1 23736 23736 4.3292 2.485 1 + 3541 25685 2255 2258 4402 4402 0.09941120742928433 DKVEFLSQL 9 Unmodified _DKVEFLSQL_ 0 0 0 nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 MULTI-MSMS UPN47_class_I_Rep_3 4 539.7930908203125 2 539.792589 1077.57063 0.41749 0.00022536 0.16527 8.9214E-05 0.58277 0.00031457 539.7927132535087 66.468 0.48612 69.653 69.396 69.882 3.1853 93 37 3 0 0 0 0.21414 1 15973 15973 19.362 3.2128 1 180580 3542 5094 2256 2259 4403 4403 0.03494305894855643 DKVVHFHHC 9 Unmodified _DKVVHFHHC_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|141|2|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|141|2|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|141|2|sense MSMS UPN48_class_I_Rep_3 7 561.2666015625 2 561.269093 1120.52363 NaN NaN NaN NaN NaN NaN NaN 34.687 1 38.359 37.859 38.859 3.6721 0 0 0 0.39326 1 5535 5535 2.3027 0.4585 1 3543 15321 2257 2260 4404 4404 -0.03180832137263678 DKWKRIHCK 9 Unmodified _DKWKRIHCK_ 0 0 0 REV__L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|16|1|sense REV__L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|16|1|sense MSMS UPN47_class_I_Rep_1 2 405.2403869628906 3 405.225603 1212.65498 NaN NaN NaN NaN NaN NaN NaN 78.165 1 81.594 81.094 82.094 3.4289 0 0 0 0.4007 1 19425 19425 0.23584 0.028987 1 + 3544 30619 2258 2261 4405 4405 0.057159782306143825 DKYKDRLD 8 Unmodified _DKYKDRLD_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MSMS UPN47_class_I_Rep_1 2 526.7739868164062 2 526.772188 1051.52982 NaN NaN NaN NaN NaN NaN NaN 27.413 1 31.179 30.679 31.679 3.7662 0 0 0 0.40659 1 4073 4073 1.8442 0 1 + 3545 17600 2259 2262 4406 4406 0.006119645752278302 DKYKDRLD 8 Unmodified _DKYKDRLD_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MSMS UPN47_class_I_Rep_2 3 526.7731323242188 2 526.772188 1051.52982 NaN NaN NaN NaN NaN NaN NaN 26.87 1 30.368 29.868 30.868 3.4986 0 0 0 0.40659 1 3951 3951 1.8442 0.19162 1 + 3546 17600 2259 2262 4407 4407 0.006119645752278302 DLAGLKKVN 9 Unmodified _DLAGLKKVN_ 0 0 0 HAL1_dup17224|chr13:19982783-19982983:-|1.039603315620585|0.0013635371892456|9.57|151.0|8|3|sense HAL1_dup17224|chr13:19982783-19982983:-|1.039603315620585|0.0013635371892456|9.57|151.0|8|3|sense HAL1_dup17224|chr13:19982783-19982983:-|1.039603315620585|0.0013635371892456|9.57|151.0|8|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.29022216796875 2 479.290017 956.565481 -0.23315 -0.00011175 -0.04978 -2.3859E-05 -0.28293 -0.00013561 479.2900073655146 31.57 0.675 35.039 34.644 35.319 3.4691 105 56 2 0 0 0 0.46869 1 5427 5427 3.9444 1.3669 1 141560 3547 7831 2260 2263 4408 4408 0.0854604682289164 DLAITFLGI 9 Unmodified _DLAITFLGI_ 0 0 0 L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|15|1|sense L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|15|1|sense L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|15|1|sense MSMS UPN47_class_I_Rep_2 3 481.7798156738281 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 22.632 1 26.077 25.577 26.577 3.4447 0 0 0 0.39428 1 2718 2718 2.0598 0 1 3548 12031 2261 2264 4409 4409 0.06612126217078185 DLALGLQQV 9 Unmodified _DLALGLQQV_ 0 0 0 REV__ENSG00000188322|ENST00000341901|SBK1 REV__ENSG00000188322|ENST00000341901|SBK1 MULTI-MSMS UPN47_class_I_Rep_3 4 478.77392578125 2 478.7742 955.533846 0.072865 3.4886E-05 -0.25413 -0.00012167 -0.18126 -8.6783E-05 478.7740311932128 70.639 0.55109 73.851 73.558 74.109 3.2113 74 47 2 0 0 0 0.19147 1 17261 17261 21.537 1.1224 1 121400 + 3549 20964 2262 2265 4410 4410 0.0543005406894963 DLASNLDPI 9 Unmodified _DLASNLDPI_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|92|3|sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|92|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2471618652344 2 479.248015 956.481476 -0.29069 -0.00013931 -0.11569 -5.5446E-05 -0.40638 -0.00019476 479.2479041965047 38.632 0.62092 42.297 42.054 42.675 3.6652 82 41 3 0 0 0 0.24936 1 7412 7412 17.113 0.96379 1 199450 + 3550 29136 2263 2266 4411 4411 0.001494709353323742 DLASNLDPI 9 Unmodified _DLASNLDPI_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|92|3|sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|92|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.24755859375 2 479.248015 956.481476 -0.23438 -0.00011233 -0.57442 -0.00027529 -0.8088 -0.00038762 479.2477725056068 38.895 0.67863 42.274 42.035 42.713 3.3785 68 39 2 0 0 0 0.24936 2 7544 7544;7586 17.113 0 1 157530 + 3551 29136 2263 2266 4412;4413 4412 0.001494709353323742 DLASNLDPI 9 Unmodified _DLASNLDPI_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|92|3|sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|92|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.2474060058594 2 479.248015 956.481476 -0.41716 -0.00019992 -0.26592 -0.00012744 -0.68308 -0.00032737 479.24782892587126 39.045 0.71382 42.283 41.999 42.713 3.2379 85 49 2 0 0 0 0.31407 1 7635 7635 13.042 0.80181 1 171990 + 3552 29136 2263 2266 4414 4414 0.001494709353323742 DLCFLLCVCNC 11 Unmodified _DLCFLLCVCNC_ 0 0 0 Charlie17_dup528|chr15:64547905-64548478:+|2.549526965463325|0.0150751316489147|7.4|151.0|34|2|anti-sense Charlie17_dup528|chr15:64547905-64548478:+|2.549526965463325|0.0150751316489147|7.4|151.0|34|2|anti-sense Charlie17_dup528|chr15:64547905-64548478:+|2.549526965463325|0.0150751316489147|7.4|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 623.2601928710938 2 623.260373 1244.50619 0.45677 0.00028469 -0.6729 -0.00041939 -0.21613 -0.00013471 623.2599602779208 52.65 0.53404 56.248 56.014 56.548 3.5979 60 36 2 0 0 0 0.67264 1 10873 10873 1.1933 0.12188 1 173550 3553 454 2264 2267 4415 4415 -0.10627999841085511 DLDDSYCS 8 Unmodified _DLDDSYCS_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MSMS UPN48_class_I_Rep_2 6 459.1720275878906 2 459.16329 916.312028 NaN NaN NaN NaN NaN NaN NaN 96.047 1 99.828 99.328 100.33 3.7804 0 0 0 0.40604 1 22814 22814 2.5775 1.7838 1 + 3554 20389 2265 2268 4416 4416 -0.1494759340954488 DLDQKSVPSPL 11 Unmodified _DLDQKSVPSPL_ 0 0 0 ENST00000495653.1_1_3:47450801-47451197:+|nuORF ENST00000495653.1_1_3:47450801-47451197:+|nuORF ENST00000495653.1_1_3:47450801-47451197:+|nuORF MSMS UPN47_class_I_Rep_1 2 599.818115234375 2 599.819335 1197.62412 NaN NaN NaN NaN NaN NaN NaN 44.617 1 48.316 47.816 48.816 3.6989 0 0 0 0.38417 1 9293 9293 2.4985 0.43874 1 3555 7093 2266 2269 4417 4417 0.033210586067070835 DLDRQLDQLI 10 Unmodified _DLDRQLDQLI_ 0 0 0 REV__L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|61|2|sense REV__L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|61|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 615.33251953125 2 614.830234 1227.64592 0.37289 0.00022927 0.11844 7.2818E-05 0.49133 0.00030208 614.83024047167 66.305 0.63438 69.564 69.315 69.949 3.2588 53 40 2 0 0 0 0.53414 1 15940 15940 7.609 0 1 129750 + 3556 29918 2267 2270 4418 4418 0.04119863355299458 DLDRQLDRFI 10 Unmodified _DLDRQLDRFI_ 0 0 0 REV__L1PA8A_dup392|chr3:4344274-4348582:+|2.81011986610894|0.2837244459964698|3.31|151.0|106|3|sense REV__L1PA8A_dup392|chr3:4344274-4348582:+|2.81011986610894|0.2837244459964698|3.31|151.0|106|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 645.8440551757812 2 645.843676 1289.6728 0.46338 0.00029927 -0.02129 -1.375E-05 0.44209 0.00028552 645.8436141340836 53.069 0.7352 56.588 56.236 56.971 3.5192 109 52 3 0 0 0 0.56337 1 11005 11005 1.1933 0 1 485770 + 3557 30277 2268 2271 4419 4419 0.039549719664591976 DLDSRVLYY 9 Unmodified _DLDSRVLYY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS UPN47_class_I_Rep_1 2 572.2877807617188 2 572.287671 1142.56079 0.37013 0.00021182 -0.013364 -7.648E-06 0.35676 0.00020417 572.2876095827932 58.16 1.426 61.597 61.19 62.616 3.437 163 92 2 0 0 0 0.0051925 9 13444 13357;13401;13444;13486;13525;13568;13609;13619;13639 92.653 42.72 1 2438800 3558 2682 2269 2272 4420;4421;4422;4423;4424;4425;4426;4427;4428 4422 -0.004788821105421448 DLDSRVLYY 9 Unmodified _DLDSRVLYY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS UPN47_class_I_Rep_2 3 572.287841796875 2 572.287671 1142.56079 0.51949 0.0002973 -0.12627 -7.226E-05 0.39322 0.00022504 572.287542997772 58.436 1.4087 61.718 61.234 62.643 3.2818 149 89 2 0 0 0 0.0060693 8 13500 13461;13500;13539;13578;13621;13664;13712;13806 82.529 40.69 1 2025900 3559 2682 2269 2272 4429;4430;4431;4432;4433;4434;4435;4436 4430 -0.004788821105421448 DLDSRVLYY 9 Unmodified _DLDSRVLYY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_2 3 572.28857421875 2 572.287671 1142.56079 NaN NaN NaN NaN NaN NaN NaN 59.428 1 62.701 62.201 63.201 3.2731 0 0 0 0.32573 1 13832 13832 9.3831 0.035688 1 3560 2682 2269 2272 4437 4437 -0.004788821105421448 DLDSRVLYY 9 Unmodified _DLDSRVLYY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS UPN47_class_I_Rep_3 4 572.287841796875 2 572.287671 1142.56079 0.34153 0.00019545 -2.2565 -0.0012914 -1.915 -0.0010959 572.2876824079657 58.434 1.6098 61.6 60.889 62.499 3.1658 368 104 6 0 0 0 0.0060693 8 13592 13552;13592;13635;13681;13722;13762;13805;13850 82.529 32.596 1 2050300 3561 2682 2269 2272 4438;4439;4440;4441;4442;4443;4444;4445 4439 -0.004788821105421448 DLDSRVLYY 9 Unmodified _DLDSRVLYY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_3 4 572.2874755859375 2 572.287671 1142.56079 NaN NaN NaN NaN NaN NaN NaN 59.487 1 62.652 62.152 63.152 3.1651 0 0 0 0.32573 1 13901 13901 9.3831 0.035688 1 3562 2682 2269 2272 4446 4446 -0.004788821105421448 DLDWFESF 8 Unmodified _DLDWFESF_ 0 0 0 REV__ENSG00000110245|ENST00000227667|APOC3 REV__ENSG00000110245|ENST00000227667|APOC3 MSMS UPN47_class_I_Rep_3 4 529.725341796875 2 529.726915 1057.43928 NaN NaN NaN NaN NaN NaN NaN 118.04 1 121.46 120.96 121.96 3.4238 0 0 0 0.40604 1 29101 29101 2.5775 0 1 + 3563 18429 2270 2273 4447 4447 -0.0871450447305051 DLEGFIVVQ 9 Unmodified _DLEGFIVVQ_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|349|3|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|349|3|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|349|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.27423095703125 2 510.274032 1018.53351 0.29219 0.0001491 0.024196 1.2347E-05 0.31639 0.00016144 510.2738932256494 83.623 0.92045 87.189 86.751 87.671 3.5655 283 108 4 0 0 0 0.090251 1 20966 20966 36.127 1.7253 1 1136600 3564 14551 2271 2274 4448 4448 0.02498634349092299 DLELAKLY 8 Unmodified _DLELAKLY_ 0 0 0 REV__ENSG00000139324|ENST00000266712|TMTC3 REV__ENSG00000139324|ENST00000266712|TMTC3 MULTI-MSMS UPN46_class_I_Rep_3 1 482.77154541015625 2 482.771126 963.527698 0.21183 0.00010227 -0.092755 -4.4779E-05 0.11908 5.7488E-05 482.7709881835139 64.844 0.81628 64.844 64.546 65.363 0 215 85 4 0 0 0 0.82752 1 14549 14549 8.5933 0.68312 1 3399500 + 3565 19310 2272 2275 4449 4449 0.044475358374370444 DLERKVESL 9 Unmodified _DLERKVESL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_1 2 544.8009033203125 2 544.800946 1087.58734 0.012402 6.7565E-06 -0.076591 -4.1727E-05 -0.064189 -3.497E-05 544.8008565341604 38.276 1.4766 41.941 41.556 43.033 3.6652 272 104 4 0 0 0 0.0068495 8 7444 7282;7323;7362;7403;7444;7485;7528;7568 171.46 68.111 1 1660700 3566 824 2273 2276 4450;4451;4452;4453;4454;4455;4456;4457 4454 0.04704806780819126 DLERKVESL 9 Unmodified _DLERKVESL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_2 3 544.8008422851562 2 544.800946 1087.58734 0.014201 7.7367E-06 -0.045487 -2.4781E-05 -0.031286 -1.7045E-05 544.8008843851267 38.624 1.5803 42.012 41.637 43.217 3.3879 265 106 4 0 0 0 0.0046371 7 7540 7421;7460;7496;7540;7576;7615;7653 147.24 61.599 1 1518800 3567 824 2273 2276 4458;4459;4460;4461;4462;4463;4464 4461 0.04704806780819126 DLERKVESL 9 Unmodified _DLERKVESL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_3 4 544.8008422851562 2 544.800946 1087.58734 -0.06526 -3.5554E-05 -0.03454 -1.8817E-05 -0.0998 -5.4371E-05 544.8008800975787 38.828 1.5207 42.066 41.595 43.116 3.238 287 107 4 0 0 0 0.0046371 8 7630 7515;7554;7589;7630;7669;7715;7754;7798 147.24 61.599 1 1572200 3568 824 2273 2276 4465;4466;4467;4468;4469;4470;4471;4472 4468 0.04704806780819126 DLESAVSFY 9 Unmodified _DLESAVSFY_ 0 0 0 REV__LTR79_dup3786|chr21:35021542-35021641:-|1.3798957509052776|0.0012871427672745|10.07|150.0|1|1|sense REV__LTR79_dup3786|chr21:35021542-35021641:-|1.3798957509052776|0.0012871427672745|10.07|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 515.7396240234375 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 74.27 1 77.664 77.164 78.164 3.3937 0 0 0 0.37476 1 18274 18274 6.7232 0.36906 1 + 3569 31014 2274 2277 4473 4473 -0.048062353015666304 DLFDFITER 9 Unmodified _DLFDFITER_ 0 0 0 ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1 ENSG00000137193|ENST00000373509|PIM1 ENSG00000137193|ENST00000373509|PIM1 MULTI-MSMS UPN48_class_I_Rep_1 5 578.2875366210938 2 578.287671 1154.56079 0.4267 0.00024676 0.27182 0.00015719 0.69853 0.00040395 578.2874179183223 81.657 0.79433 85.232 84.852 85.647 3.5753 206 94 3 0 0 0 0.006587 4 19538 19437;19474;19505;19538 114.19 60.354 1 666670 3570 3012 2275 2278 4474;4475;4476;4477 4477 -0.010308821105354582 DLFDFITER 9 Unmodified _DLFDFITER_ 0 0 0 ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1 ENSG00000137193|ENST00000373509|PIM1 ENSG00000137193|ENST00000373509|PIM1 MSMS UPN48_class_I_Rep_2 6 578.2882690429688 2 578.287671 1154.56079 NaN NaN NaN NaN NaN NaN NaN 81.42 1 85.076 84.576 85.576 3.6567 0 0 0 0.16861 1 19327 19327 18.373 7.5492 1 3571 3012 2275 2278 4478 4478 -0.010308821105354582 DLFDFITER 9 Unmodified _DLFDFITER_ 0 0 0 ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1 ENSG00000137193|ENST00000373509|PIM1 ENSG00000137193|ENST00000373509|PIM1 MSMS UPN48_class_I_Rep_2 6 578.2876586914062 2 578.287671 1154.56079 NaN NaN NaN NaN NaN NaN NaN 81.577 1 85.233 84.733 85.733 3.6567 0 0 0 0.10979 1 19366 19366 22.658 11.163 1 3572 3012 2275 2278 4479 4479 -0.010308821105354582 DLFDFITER 9 Unmodified _DLFDFITER_ 0 0 0 ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1 ENSG00000137193|ENST00000373509|PIM1 ENSG00000137193|ENST00000373509|PIM1 MULTI-MSMS UPN48_class_I_Rep_3 7 578.2877197265625 2 578.287671 1154.56079 0.51502 0.00029783 -0.21745 -0.00012575 0.29757 0.00017208 578.2875138682798 81.622 0.46838 85.307 85.052 85.52 3.685 97 55 2 0 0 0 0.071184 1 19340 19340 40.725 23.282 1 174040 3573 3012 2275 2278 4480 4480 -0.010308821105354582 DLFEDGGIIR 10 Unmodified _DLFEDGGIIR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-SECPEP UPN48_class_I_Rep_3 7 567.2794799804688 2 567.793121 1133.57169 0.4664 0.00026482 -0.058164 -3.3025E-05 0.40824 0.00023179 567.793045045494 62.923 0.3527 66.432 66.314 66.667 3.5091 36 25 2 0 0 0 0.84575 1 14044 14044 14.405 8.1996 1 74902 3574 1421 2276 2279 4481 4481 0.010245202637634065 DLFEDGGIIRR 11 Unmodified _DLFEDGGIIRR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS UPN48_class_I_Rep_1 5 645.84375 2 645.843676 1289.6728 0.46338 0.00029927 -0.02129 -1.375E-05 0.44209 0.00028552 645.8436141340836 53.069 0.7352 56.588 56.236 56.971 3.5192 109 52 3 0 0 0 0.24971 4 11047 11047;11084;11121;11164 38.615 26.374 1 485770 3575 1421 2277 2280 4482;4483;4484;4485 4482 0.039549719664591976 DLFEDGGIIRR 11 Unmodified _DLFEDGGIIRR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS UPN48_class_I_Rep_1 5 430.89801025390625 3 430.89821 1289.6728 -0.05157 -2.2221E-05 -0.18102 -7.8003E-05 -0.23259 -0.00010022 430.89804444562134 53.005 1.0713 56.524 56.102 57.173 3.5192 230 78 4 0 0 0 0.32294 1 11055 11055 13.535 0.67899 1 1272300 3576 1421 2277 2280 4486 4486 0.039549719664591976 DLFEDGGIIRR 11 Unmodified _DLFEDGGIIRR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS UPN48_class_I_Rep_2 6 645.8440551757812 2 645.843676 1289.6728 0.55483 0.00035833 -0.14876 -9.6079E-05 0.40606 0.00026225 645.8435723306493 52.844 0.76971 56.454 56.245 57.015 3.6098 85 48 2 0 0 0 0.30901 5 11022 10981;11022;11064;11107;11148 18.373 9.6277 1 257790 3577 1421 2277 2280 4487;4488;4489;4490;4491 4488 0.039549719664591976 DLFEDGGIIRR 11 Unmodified _DLFEDGGIIRR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS UPN48_class_I_Rep_3 7 645.8441772460938 2 645.843676 1289.6728 0.50784 0.00032798 0.0073142 4.7239E-06 0.51515 0.00033271 645.8436171820971 53.031 0.7701 56.614 56.199 56.969 3.5836 107 48 3 0 0 0 0.3691 4 10975 10930;10944;10975;11018 13.615 7.883 1 603760 3578 1421 2277 2280 4492;4493;4494;4495 4494 0.039549719664591976 DLFEDGGIIRR 11 Unmodified _DLFEDGGIIRR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS UPN48_class_I_Rep_3 7 430.8981018066406 3 430.89821 1289.6728 -0.010358 -4.4631E-06 -0.13555 -5.8409E-05 -0.14591 -6.2873E-05 430.8980650576036 53.033 1.0467 56.617 56.151 57.198 3.5836 195 68 4 0 0 0 0.28911 2 10956 10956;11016 22.109 0.30942 1 1843200 3579 1421 2277 2280 4496;4497 4496 0.039549719664591976 DLFEDGGIIRR 11 Unmodified _DLFEDGGIIRR_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MATCH UPN48_class_I_Rep_2 6 3 430.89821 1289.6728 0.14357 6.1865E-05 -0.33389 -0.00014387 -0.19032 -8.2009E-05 430.89800685859996 53.006 0.96782 56.616 56.164 57.132 3.6098 0.030053 -0.00013009 NaN 22.109 199 62 4 NaN NaN NaN NaN 0 NaN NaN 0 1079500 3580 1421 2277 2280 0.039549719664591976 DLFFDWKCYSC 11 Unmodified _DLFFDWKCYSC_ 0 0 0 REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|254|2|anti-sense REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|254|2|anti-sense MSMS UPN48_class_I_Rep_1 5 476.1979064941406 3 476.198391 1425.57334 NaN NaN NaN NaN NaN NaN NaN 14.007 1 17.523 17.023 18.023 3.5156 0 0 0 0.38417 1 337 337 0.094841 0 1 + 3581 25212 2278 2281 4498 4498 -0.12241930034110737 DLFGKMVWSG 10 Unmodified _DLFGKMVWSG_ 0 0 0 REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF MSMS UPN47_class_I_Rep_1 2 570.2642211914062 2 570.281334 1138.54812 NaN NaN NaN NaN NaN NaN NaN 25.368 1 29.117 28.617 29.617 3.7495 0 0 0 0.53105 1 3468 3468 1.3295 0.13619 1 + 3582 20144 2279 2282 4499 4499 -0.015616167744155973 DLFKFLPLQ 9 Unmodified _DLFKFLPLQ_ 0 0 0 REV__L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|98|2|anti-sense REV__L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|98|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.8231811523438 2 560.823692 1119.63283 0.047816 2.6816E-05 -0.73834 -0.00041408 -0.69052 -0.00038726 560.8232428038832 19.123 1.0067 22.513 21.997 23.004 3.3898 189 105 2 0 0 0 0.42249 2 1682 1682;1752 6.7232 0.51738 1 99939 + 3583 24349 2280 2283 4500;4501 4500 0.07780077033862653 DLFKFLPLQ 9 Unmodified _DLFKFLPLQ_ 0 0 0 REV__L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|98|2|anti-sense REV__L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|98|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.8226928710938 2 560.823692 1119.63283 -0.3478 -0.00019505 -0.53315 -0.000299 -0.88095 -0.00049406 560.8232932836396 19.336 0.88772 22.688 22.258 23.145 3.3514 167 89 2 0 0 0 0.49026 1 1822 1822 1.6526 0.17072 1 91818 + 3584 24349 2280 2283 4502 4502 0.07780077033862653 DLFLLWIGN 9 Unmodified _DLFLLWIGN_ 0 0 0 ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF MSMS UPN48_class_I_Rep_1 5 545.8009643554688 2 545.800217 1089.58588 NaN NaN NaN NaN NaN NaN NaN 72.8 1 76.274 75.774 76.774 3.4732 0 0 0 0.22485 1 17111 17111 14.838 2.3067 1 3585 6546 2281 2284 4503 4503 0.044672174827155686 DLFLLWIGN 9 Unmodified _DLFLLWIGN_ 0 0 0 ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 545.8011474609375 2 545.800217 1089.58588 0.5271 0.00028769 0.12888 7.0343E-05 0.65598 0.00035803 545.8001667149642 72.705 0.36757 76.242 76.048 76.416 3.5373 36 27 2 0 0 0 0.28552 1 16967 16967 14.838 2.3067 1 84325 3586 6546 2281 2284 4504 4504 0.044672174827155686 DLFLLWIGN 9 Unmodified _DLFLLWIGN_ 0 0 0 ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 545.800217 1089.58588 0.47335 0.00025836 0.3948 0.00021548 0.86815 0.00047384 545.8004933209597 72.569 0.16611 76.042 75.938 76.105 3.4732 -0.13896 0.00053134 NaN 14.838 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 87532 3587 6546 2281 2284 0.044672174827155686 DLFLLWIGN 9 Unmodified _DLFLLWIGN_ 0 0 0 ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF ENST00000394631.7_1_4:110745630-110745702:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 545.800217 1089.58588 0.47805 0.00026092 -0.62057 -0.00033871 -0.14252 -7.7788E-05 545.8000861999282 72.694 0.33212 76.258 76.198 76.53 3.5645 0.077736 -0.00057704 NaN 14.838 30 27 2 NaN NaN NaN NaN 0 NaN NaN 0 74284 3588 6546 2281 2284 0.044672174827155686 DLFPPHTL 8 Unmodified _DLFPPHTL_ 0 0 0 REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 470.2505798339844 2 470.25036 938.486168 0.092281 4.3395E-05 -0.20547 -9.6621E-05 -0.11319 -5.3226E-05 470.2502505543696 50.726 1.1646 54.064 53.681 54.846 3.3386 84 60 2 0 0 0 0.82752 1 11154 11154 13.508 13.508 1 77638 + 3589 23014 2282 2285 4505 4505 0.01446399868757453 DLFPPHTL 8 Unmodified _DLFPPHTL_ 0 0 0 REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 470.31549072265625 2 470.25036 938.486168 0.092281 4.3395E-05 -0.20547 -9.6621E-05 -0.11319 -5.3226E-05 470.2502505543696 50.726 1.1646 54.064 53.681 54.846 3.3386 84 60 2 0 0 0 0.72333 1 11188 11188 12.532 3.9383 1 77638 + 3590 23014 2282 2285 4506 4506 0.01446399868757453 DLFPPHTL 8 Unmodified _DLFPPHTL_ 0 0 0 REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 470.25042724609375 2 470.25036 938.486168 0.065628 3.0862E-05 -0.279 -0.0001312 -0.21338 -0.00010034 470.2502862955253 51.152 1.0214 54.369 53.656 54.678 3.2163 75 53 2 0 0 0 0.82752 1 11257 11257 8.5933 3.3626 1 67598 + 3591 23014 2282 2285 4507 4507 0.01446399868757453 DLGFYQFPSV 10 Unmodified _DLGFYQFPSV_ 0 0 0 REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|201|3|anti-sense REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|201|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.7862548828125 2 586.784764 1171.55498 NaN NaN NaN NaN NaN NaN NaN 54.855 1 58.174 57.674 58.674 3.3187 0 0 0 0.53105 1 12435 12435 7.609 1.4032 1 + 3592 28964 2283 2286 4508 4508 -0.02393980622196068 DLGKALGIYV 10 Unmodified _DLGKALGIYV_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MSMS UPN47_class_I_Rep_2 3 524.8046264648438 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 61.417 1 64.676 64.176 65.176 3.2594 0 0 0 0.53105 1 14436 14436 16.149 2.2431 1 3593 5028 2284 2287 4509 4509 0.07455200137110296 DLGQFTLGEV 10 Unmodified _DLGQFTLGEV_ 0 0 0 REV__ENSG00000198799|ENST00000361127|LRIG2 REV__ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS UPN47_class_I_Rep_3 4 539.7740478515625 2 539.774396 1077.53424 -0.057399 -3.0983E-05 0.098193 5.3002E-05 0.040794 2.202E-05 539.7741836550522 39.724 0.65882 42.962 42.7 43.359 3.238 74 46 2 0 0 0 0.55724 1 7927 7927 4.5289 0.19963 1 112440 + 3594 21148 2285 2288 4510 4510 -0.001425710018565951 DLHEKDFSL 9 Unmodified _DLHEKDFSL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_1 2 552.2719116210938 2 552.272021 1102.52949 0.090774 5.0132E-05 -0.21063 -0.00011633 -0.11986 -6.6193E-05 552.2718100774707 43.719 1.041 47.414 46.951 47.992 3.6951 121 60 3 0 0 0 0.038999 4 8994 8954;8994;9035;9074 53.404 9.5756 1 283880 3595 1621 2286 2289 4511;4512;4513;4514 4512 -0.0176745514461345 DLHEKDFSL 9 Unmodified _DLHEKDFSL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_2 3 552.2719116210938 2 552.272021 1102.52949 0.15693 8.6667E-05 0.014954 8.2587E-06 0.17188 9.4926E-05 552.2718830025102 43.969 1.0854 47.327 46.975 48.061 3.358 138 66 3 0 0 0 0.026395 4 9134 9090;9134;9172;9251 59.368 15.51 1 244410 3596 1621 2286 2289 4515;4516;4517;4518 4516 -0.0176745514461345 DLHEKDFSL 9 Unmodified _DLHEKDFSL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_3 4 552.2720336914062 2 552.272021 1102.52949 0.1741 9.6152E-05 -0.048277 -2.6662E-05 0.12582 6.9489E-05 552.2718516323188 44.137 1.04 47.381 47.01 48.05 3.2441 131 58 3 0 0 0 0.0203 4 9198 9136;9198;9238;9283 63.227 13.294 1 230310 3597 1621 2286 2289 4519;4520;4521;4522 4520 -0.0176745514461345 DLHHTSPYR 9 Unmodified _DLHHTSPYR_ 0 0 0 L1MC1_dup6799|chr8:67187699-67188272:+|1.5181681535021103|0.117836428532698|3.69|151.0|21|2|sense L1MC1_dup6799|chr8:67187699-67188272:+|1.5181681535021103|0.117836428532698|3.69|151.0|21|2|sense L1MC1_dup6799|chr8:67187699-67188272:+|1.5181681535021103|0.117836428532698|3.69|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.2742309570312 2 563.275429 1124.53631 0.073507 4.1404E-05 -1.7977 -0.0010126 -1.7242 -0.00097117 563.274411650335 42.211 0.361 45.45 45.29 45.651 3.2394 39 26 2 0 0 0 0.47493 1 8644 8644 3.2813 1.2216 1 66991 3598 11184 2287 2290 4523 4523 -0.020980974733902258 DLHSISPTSF 10 Unmodified _DLHSISPTSF_ 0 0 0 MLT1E1A_dup1491|chr6:157055619-157056232:-|1.4360100538980265|0.036133176269775|5.31|151.0|34|2|anti-sense MLT1E1A_dup1491|chr6:157055619-157056232:-|1.4360100538980265|0.036133176269775|5.31|151.0|34|2|anti-sense MLT1E1A_dup1491|chr6:157055619-157056232:-|1.4360100538980265|0.036133176269775|5.31|151.0|34|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.2716674804688 2 552.272021 1102.52949 0.090774 5.0132E-05 -0.21063 -0.00011633 -0.11986 -6.6193E-05 552.2718100774707 43.719 1.041 47.414 46.951 47.992 3.6951 121 60 3 0 0 0 0.56078 1 8910 8910 3.2813 0 1 283880 3599 16366 2288 2291 4524 4524 -0.017674551446361875 DLIIFPDDC 9 Unmodified _DLIIFPDDC_ 0 0 0 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 MSMS UPN48_class_I_Rep_1 5 525.74365234375 2 525.74425 1049.47395 NaN NaN NaN NaN NaN NaN NaN 117.04 1 120.67 120.17 121.17 3.6254 0 0 0 0.4007 1 28521 28521 0.52476 0 1 3600 2669 2289 2292 4525 4525 -0.04881004656613186 DLIIKGISV 9 Unmodified _DLIIKGISV_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN47_class_I_Rep_1 2 479.30303955078125 2 479.302593 956.590633 0.085424 4.0944E-05 0.10485 5.0254E-05 0.19027 9.1198E-05 479.3025321266165 66.594 0.76231 69.952 69.656 70.418 3.3576 68 54 2 0 0 0 0.10956 4 15938 15891;15938;15988;16035 32.037 4.8142 1 210030 3601 2344 2290 2293 4526;4527;4528;4529 4527 0.11060101625480456 DLIIKGISV 9 Unmodified _DLIIKGISV_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN47_class_I_Rep_2 3 479.3027038574219 2 479.302593 956.590633 0.098457 4.7191E-05 -0.15381 -7.3721E-05 -0.055351 -2.653E-05 479.30241827165787 66.806 0.87531 70.065 69.757 70.632 3.2588 108 66 2 0 0 0 0.065535 2 16069 16069;16112 42.312 8.8676 1 259140 3602 2344 2290 2293 4530;4531 4530 0.11060101625480456 DLIIKGISV 9 Unmodified _DLIIKGISV_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN47_class_I_Rep_3 4 479.302490234375 2 479.302593 956.590633 0.070449 3.3766E-05 0.12812 6.1409E-05 0.19857 9.5175E-05 479.30250589444404 66.799 0.85765 69.985 69.574 70.431 3.1853 113 66 3 0 0 0 0.065535 3 16133 16094;16133;16169 42.312 8.8676 1 280940 3603 2344 2290 2293 4532;4533;4534 4533 0.11060101625480456 DLIKPHEEL 9 Unmodified _DLIKPHEEL_ 0 0 0 ENSG00000147316|ENST00000344683|MCPH1 ENSG00000147316|ENST00000344683|MCPH1 ENSG00000147316|ENST00000344683|MCPH1 MSMS UPN47_class_I_Rep_2 3 547.297607421875 2 547.298039 1092.58152 NaN NaN NaN NaN NaN NaN NaN 28.509 1 32.008 31.508 32.508 3.4986 0 0 0 0.4007 1 4434 4434 0.52476 0 1 3604 3472 2291 2294 4535 4535 0.038937082691290925 DLIKVRLQ 8 Unmodified _DLIKVRLQ_ 0 0 0 ENST00000531791.1_1_11:65143880-65144565:-|nuORF;nc|ENSG00000162241|Q8N413-3|SLC25A45;nc|ENSG00000162241|Q8N413-2|SLC25A45;nc|ENSG00000162241|Q8N413-4|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45 ENST00000531791.1_1_11:65143880-65144565:-|nuORF ENST00000531791.1_1_11:65143880-65144565:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 492.8138122558594 2 492.813659 983.612765 -0.050572 -2.4922E-05 0.3315 0.00016337 0.28093 0.00013844 492.8138123064862 47.866 0.77334 51.547 51.306 52.08 3.6819 97 45 3 0 0 0 0.82752 5 10348 10222;10268;10309;10348;10392 36.044 1.9418 1 326000 3605 3922 2292 2295 4536;4537;4538;4539;4540 4539 0.12030326093884014 DLIKVRLQ 8 Unmodified _DLIKVRLQ_ 0 0 0 ENST00000531791.1_1_11:65143880-65144565:-|nuORF;nc|ENSG00000162241|Q8N413-3|SLC25A45;nc|ENSG00000162241|Q8N413-2|SLC25A45;nc|ENSG00000162241|Q8N413-4|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45 ENST00000531791.1_1_11:65143880-65144565:-|nuORF ENST00000531791.1_1_11:65143880-65144565:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 492.81402587890625 2 492.813659 983.612765 0.20021 9.8664E-05 0.01353 6.6677E-06 0.21374 0.00010533 492.81360941456836 48.347 0.94955 51.697 51.333 52.282 3.3492 108 49 3 0 0 0 0.82752 1 10369 10369 12.532 0.89125 1 294600 3606 3922 2292 2295 4541 4541 0.12030326093884014 DLIKVRLQ 8 Unmodified _DLIKVRLQ_ 0 0 0 ENST00000531791.1_1_11:65143880-65144565:-|nuORF;nc|ENSG00000162241|Q8N413-3|SLC25A45;nc|ENSG00000162241|Q8N413-2|SLC25A45;nc|ENSG00000162241|Q8N413-4|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45 ENST00000531791.1_1_11:65143880-65144565:-|nuORF ENST00000531791.1_1_11:65143880-65144565:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 492.8135070800781 2 492.813659 983.612765 0.17428 8.5889E-05 0.017666 8.7061E-06 0.19195 9.4595E-05 492.8135973649933 48.599 1.0147 51.834 51.341 52.356 3.2345 102 54 3 0 0 0 0.82752 1 10540 10540 28.487 1.6032 1 235580 3607 3922 2292 2295 4542 4542 0.12030326093884014 DLIKVVKVP 9 Unmodified _DLIKVVKVP_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;nc|ENSG00000127804|Q86W50-2|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MSMS UPN47_class_I_Rep_1 2 505.8343811035156 2 505.83406 1009.65357 NaN NaN NaN NaN NaN NaN NaN 47.562 1 51.257 50.757 51.757 3.6951 0 0 0 0.22485 1 10183 10183 14.838 0 1 3608 2573 2293 2296 4543 4543 0.14912667413511826 DLIKVVKVP 9 Unmodified _DLIKVVKVP_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;nc|ENSG00000127804|Q86W50-2|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MULTI-MSMS UPN47_class_I_Rep_3 4 505.8342590332031 2 505.83406 1009.65357 0.1793 9.0698E-05 0.43035 0.00021768 0.60965 0.00030838 505.83427672305993 47.782 0.5484 51.023 50.978 51.526 3.2405 80 47 2 0 0 0 0.35081 1 10437 10437 10.824 0 1 338640 3609 2573 2293 2296 4544 4544 0.14912667413511826 DLIMVYYLF 9 Unmodified _DLIMVYYLF_ 0 0 0 L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|308|3|anti-sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|308|3|anti-sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_3 7 588.8052978515625 2 588.804111 1175.59367 NaN NaN NaN NaN NaN NaN NaN 50.739 1 54.354 53.854 54.854 3.6148 0 0 0 0.39428 1 10326 10326 2.0598 0.21551 1 3610 15365 2294 2297 4545 4545 0.012896086879663926 DLIQQSHFW 9 Unmodified _DLIQQSHFW_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|13|1|sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|13|1|sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 587.2874145507812 2 587.288005 1172.56146 NaN NaN NaN NaN NaN NaN NaN 54.551 1 58.052 57.552 58.552 3.5014 0 0 0 0.38639 1 12313 12313 3.9444 0.66309 1 3611 15288 2295 2298 4546 4546 -0.017920426708315063 DLIRGIHEL 9 Unmodified _DLIRGIHEL_ 0 0 0 REV__ENSG00000184564|ENST00000647374|SLITRK6 REV__ENSG00000184564|ENST00000647374|SLITRK6 MULTI-SECPEP UPN47_class_I_Rep_2 3 533.2481689453125 2 533.306198 1064.59784 -0.074158 -3.9549E-05 1.1185 0.00059651 1.0444 0.00055696 533.8080931650769 41.524 0.20687 44.889 44.742 44.948 3.3655 22 17 2 0 0 0 0.12026 1 8391 8391 8.1555 1.9497 1 60452 + 3612 20822 2296 2299 4547 4547 0.06812834225888764 DLISKKGHIL 10 Unmodified _DLISKKGHIL_ 0 0 0 MLT1B_dup17526|chr21:38390368-38390786:+|1.9455177721881176|0.2033927216422522|3.26|148.0|31|3|anti-sense MLT1B_dup17526|chr21:38390368-38390786:+|1.9455177721881176|0.2033927216422522|3.26|148.0|31|3|anti-sense MLT1B_dup17526|chr21:38390368-38390786:+|1.9455177721881176|0.2033927216422522|3.26|148.0|31|3|anti-sense MSMS UPN48_class_I_Rep_1 5 562.3438720703125 2 562.345323 1122.67609 NaN NaN NaN NaN NaN NaN NaN 81.343 1 84.905 84.405 85.405 3.5624 0 0 0 0.53105 1 19393 19393 2.7352 0.67545 1 3613 16273 2297 2300 4548 4548 0.11966266811123205 DLISKKGHIL 10 Unmodified _DLISKKGHIL_ 0 0 0 MLT1B_dup17526|chr21:38390368-38390786:+|1.9455177721881176|0.2033927216422522|3.26|148.0|31|3|anti-sense MLT1B_dup17526|chr21:38390368-38390786:+|1.9455177721881176|0.2033927216422522|3.26|148.0|31|3|anti-sense MLT1B_dup17526|chr21:38390368-38390786:+|1.9455177721881176|0.2033927216422522|3.26|148.0|31|3|anti-sense MSMS UPN48_class_I_Rep_3 7 562.3433227539062 2 562.345323 1122.67609 NaN NaN NaN NaN NaN NaN NaN 81.944 1 85.629 85.129 86.129 3.685 0 0 0 0.53105 1 19414 19414 2.7352 0.67545 1 3614 16273 2297 2300 4549 4549 0.11966266811123205 DLITVKWL 8 Unmodified _DLITVKWL_ 0 0 0 REV__ENST00000446681.1_1_6:126307826-126317129:+|nuORF REV__ENST00000446681.1_1_6:126307826-126317129:+|nuORF MSMS UPN47_class_I_Rep_3 4 494.2950439453125 2 494.29731 986.580068 NaN NaN NaN NaN NaN NaN NaN 39.376 1 42.614 42.114 43.114 3.238 0 0 0 0.4044 1 7772 7772 4.756 0 1 + 3615 22362 2298 2301 4550 4550 0.08624118971033568 DLKAAFHRP 9 Unmodified _DLKAAFHRP_ 0 0 0 REV__ENST00000578114.1_1_18:29206329-29238028:-|nuORF REV__ENST00000578114.1_1_18:29206329-29238028:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 527.7926635742188 2 527.793258 1053.57196 -0.23034 -0.00012157 -1.2039 -0.00063539 -1.4342 -0.00075696 527.7926316366515 32.272 0.21838 35.558 35.368 35.586 3.2867 22 16 2 0 0 0 0.46869 1 5580 5580 3.9444 0.3479 1 49946 + 3616 18649 2299 2302 4551 4551 0.04731984774275588 DLKEEVKK 8 Unmodified _DLKEEVKK_ 0 0 0 L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|15|1|sense L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|15|1|sense L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.7869873046875 2 494.787307 987.560061 -0.66126 -0.00032718 0.32982 0.00016319 -0.33144 -0.00016399 494.78747139305625 13.642 0.24751 17.016 16.927 17.175 3.3734 57 28 3 0 0 0 0.82752 1 352 352 24.021 0 1 75148 3617 9430 2300 2303 4552 4552 0.06578323240432837 DLKEKKEV 8 Unmodified _DLKEKKEV_ 0 0 0 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 MULTI-MSMS UPN47_class_I_Rep_1 2 494.787353515625 2 494.787307 987.560061 -0.35 -0.00017318 0.1229 6.081E-05 -0.2271 -0.00011237 494.7873792916632 13.528 0.24999 16.985 16.895 17.145 3.457 52 29 2 0 0 0 0.82752 1 346 346 38.615 4.213 1 93686 3618 601 2301 2304 4553 4553 0.06578323240432837 DLKEKKEV 8 Unmodified _DLKEKKEV_ 0 0 0 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 MULTI-SECPEP UPN47_class_I_Rep_2 3 494.7874450683594 2 494.787307 987.560061 -0.1296 -6.4124E-05 -0.13375 -6.6177E-05 -0.26335 -0.0001303 494.787236395854 13.589 0.24521 16.977 16.908 17.153 3.388 50 29 2 0 0 0 0.72333 1 355 355 18.373 1.2602 1 85588 3619 601 2301 2304 4554 4554 0.06578323240432837 DLKEKKEV 8 Unmodified _DLKEKKEV_ 0 0 0 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 494.787307 987.560061 -0.66126 -0.00032718 0.32982 0.00016319 -0.33144 -0.00016399 494.78747139305625 13.642 0.24751 17.016 16.927 17.175 3.3734 0.023229 0.00014219 NaN 18.373 57 28 3 NaN NaN NaN NaN 0 NaN NaN 0 75148 3620 601 2301 2304 0.06578323240432837 DLKEKKEVV 9 Unmodified _DLKEKKEVV_ 0 0 0 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.3212280273438 2 544.321514 1086.62847 -0.39744 -0.00021634 -0.30771 -0.00016749 -0.70515 -0.00038383 544.3214081054433 16.881 0.98203 20.243 19.847 20.829 3.3619 204 111 2 0 0 0 0.22932 3 1099 1099;1129;1161 18.373 5.7664 1 102120 3621 601 2302 2305 4555;4556;4557 4555 0.08862567820278855 DLKEKKEVV 9 Unmodified _DLKEKKEVV_ 0 0 0 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 544.321514 1086.62847 -0.071137 -3.8722E-05 -0.44313 -0.0002412 -0.51427 -0.00027993 544.3212279386128 16.346 0.81748 19.869 19.649 20.467 3.5224 -0.16894 -2.8153E-06 NaN 18.373 214 94 3 NaN NaN NaN NaN 0 NaN NaN 0 256360 3622 601 2302 2305 0.08862567820278855 DLKEKKEVV 9 Unmodified _DLKEKKEVV_ 0 0 0 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 chr2:231711371-231712443|87|14.29|0.11|6.96|+|0|None,PTMA|1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 544.321514 1086.62847 0.015503 8.4384E-06 -0.58117 -0.00031634 -0.56567 -0.00030791 544.3212026089507 16.615 1.0041 20.001 19.753 20.757 3.3864 -0.036198 -0.0001531 NaN 18.373 252 116 3 NaN NaN NaN NaN 0 NaN NaN 0 124270 3623 601 2302 2305 0.08862567820278855 DLKEPNRK 8 Unmodified _DLKEPNRK_ 0 0 0 REV__L1ME3_dup1322|chr2:174131834-174133195:-|1.0267941734194983|0.0881377911709721|3.54|151.0|40|3|sense REV__L1ME3_dup1322|chr2:174131834-174133195:-|1.0267941734194983|0.0881377911709721|3.54|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.2829895019531 2 500.282723 998.550893 -0.64647 -0.00032342 0.14946 7.477E-05 -0.49702 -0.00024865 500.28288666322334 13.502 0.18669 16.876 16.756 16.943 3.3734 36 22 2 0 0 0 0.82752 1 332 332 2.0598 0 1 31392 + 3624 27941 2303 2306 4558 4558 0.051559746747557256 DLKHAHEL 8 Unmodified _DLKHAHEL_ 0 0 0 ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8 ENST00000486832.1_1_3:137958292-137964088:+|nuORF ENST00000486832.1_1_3:137958292-137964088:+|nuORF MSMS UPN47_class_I_Rep_1 2 481.7561340332031 2 481.756341 961.498129 NaN NaN NaN NaN NaN NaN NaN 16.605 1 20.127 19.627 20.627 3.5224 0 0 0 0.40331 1 1094 1094 6.2058 1.3088 1 3625 2067 2304 2307 4559 4559 0.015840166119460264 DLKKAHHL 8 Unmodified _DLKKAHHL_ 0 0 0 nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC;nc|ENSG00000154767|Q01831-3|XPC nc|ENSG00000154767|Q01831-2|XPC nc|ENSG00000154767|Q01831-2|XPC MSMS UPN47_class_I_Rep_1 2 481.28167724609375 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 13.75 1 17.207 16.707 17.707 3.457 0 0 0 0.40404 1 405 405 5.2307 0.90143 1 3626 3683 2305 2308 4560 4560 0.06864599745563282 DLKKITNSL 9 Unmodified _DLKKITNSL_ 0 0 0 nc|ENSG00000104131|O75822-2|EIF3J;nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J nc|ENSG00000104131|O75822-2|EIF3J nc|ENSG00000104131|O75822-2|EIF3J MULTI-MSMS UPN47_class_I_Rep_1 2 516.3085327148438 2 516.308406 1030.60226 -0.14137 -7.2991E-05 0.13243 6.8375E-05 -0.0089387 -4.6151E-06 516.3085061386441 39.762 0.63047 43.428 43.186 43.817 3.6668 90 46 3 0 0 0 0.2924 2 7821 7821;7861 14.405 2.9107 1 156910 3627 1677 2306 2309 4561;4562 4561 0.08818298648793643 DLKKITNSL 9 Unmodified _DLKKITNSL_ 0 0 0 nc|ENSG00000104131|O75822-2|EIF3J;nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J nc|ENSG00000104131|O75822-2|EIF3J nc|ENSG00000104131|O75822-2|EIF3J MULTI-MSMS UPN47_class_I_Rep_3 4 516.308349609375 2 516.308406 1030.60226 -0.18374 -9.4865E-05 0.023292 1.2026E-05 -0.16045 -8.2839E-05 516.3084204802916 40.38 0.6777 43.618 43.257 43.935 3.2372 63 42 2 0 0 0 0.26468 2 8006 8006;8049 16.149 3.0078 1 95578 3628 1677 2306 2309 4563;4564 4563 0.08818298648793643 DLKKKQAL 8 Unmodified _DLKKKQAL_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS UPN47_class_I_Rep_2 3 472.2998352050781 2 472.300384 942.586216 -0.30802 -0.00014548 -0.60819 -0.00028725 -0.91621 -0.00043273 472.2999911235449 14.214 0.44514 17.601 17.487 17.932 3.3871 120 54 3 0 0 0 0.82752 2 508 508;537 23.148 3.7094 1 246640 3629 2813 2307 2310 4565;4566 4565 0.112626372025602 DLKKYAQK 8 Unmodified _DLKKYAQK_ 0 0 0 ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B MULTI-MSMS UPN47_class_I_Rep_1 2 497.2901306152344 2 497.290017 992.565481 -0.25026 -0.00012445 0.2529 0.00012576 0.0026409 1.3133E-06 497.2901364312516 38.475 0.45734 42.14 41.89 42.348 3.6652 40 34 2 0 0 0 0.82752 1 7404 7404 4.756 1.1595 1 44079 3630 891 2308 2311 4567 4567 0.06890046822900331 DLKLLFNHM 9 Unmodified _DLKLLFNHM_ 0 0 0 REV__L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|54|1|anti-sense REV__L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_2 3 565.8065185546875 2 565.804977 1129.5954 NaN NaN NaN NaN NaN NaN NaN 27.467 1 30.965 30.465 31.465 3.4986 0 0 0 0.39518 1 4127 4127 1.8442 0 1 + 3631 24359 2309 2312 4568 4568 0.035786624965794545 DLKLLRHH 8 Unmodified _DLKLLRHH_ 0 0 0 ENST00000473649.1_1_7:142960606-142961786:+|nuORF;GSTK1|p.G95Rfs*36|1|0.05|ENSG00000197448|chr7:143264670-143264671|-/A|frameshift_variant;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1 ENST00000473649.1_1_7:142960606-142961786:+|nuORF ENST00000473649.1_1_7:142960606-142961786:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 516.3082275390625 2 516.309075 1030.6036 -0.31432 -0.00016229 -1.0471 -0.00054064 -1.3614 -0.00070292 516.3085894266733 40.088 0.62301 43.459 43.235 43.858 3.3712 67 41 2 0 0 0 0.82752 3 7929 7929;7975;8013 8.5933 0 1 135580 3632 5372 2310 2313 4569;4570;4571 4569 0.08951977528226962 DLKLLRHH 8 Unmodified _DLKLLRHH_ 0 0 0 ENST00000473649.1_1_7:142960606-142961786:+|nuORF;GSTK1|p.G95Rfs*36|1|0.05|ENSG00000197448|chr7:143264670-143264671|-/A|frameshift_variant;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1 ENST00000473649.1_1_7:142960606-142961786:+|nuORF ENST00000473649.1_1_7:142960606-142961786:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 516.3070068359375 2 516.309075 1030.6036 -0.18374 -9.4865E-05 -1.2719 -0.00065668 -1.4556 -0.00075154 516.3084204802916 40.38 0.6777 43.618 43.257 43.935 3.2372 63 42 2 0 0 0 0.82752 3 8017 8017;8094;8135 8.5933 0 1 95578 3633 5372 2310 2313 4572;4573;4574 4572 0.08951977528226962 DLKMRWWFS 9 Unmodified _DLKMRWWFS_ 0 0 0 REV__L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|78|3|anti-sense REV__L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|78|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 634.3165283203125 2 634.815876 1267.6172 0.40822 0.00025914 -1.4819 -0.00094074 -1.0737 -0.0006816 635.3190337846718 45.954 0.058754 49.712 49.674 49.732 3.7579 4 2 2 0 0 0 0.12477 1 8929 8929 1.6526 1.302 1 45549 + 3634 26899 2311 2314 4575 4575 -0.005905327548589412 DLKMSQTFK 9 Unmodified _DLKMSQTFK_ 0 0 0 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 MSMS UPN48_class_I_Rep_3 7 549.28662109375 2 549.286617 1096.55868 NaN NaN NaN NaN NaN NaN NaN 43.537 1 47.175 46.675 47.675 3.6385 0 0 0 0.38784 1 8113 8113 3.5965 0 1 + 3635 18945 2312 2315 4576 4576 0.014263658800246048 DLKNKNLL 8 Unmodified _DLKNKNLL_ 0 0 0 ENSG00000158773|ENST00000368021|USF1;ENST00000472217.1_1_1:161009712-161010126:-|nuORF;nc|ENSG00000158773|P22415-2|USF1 ENSG00000158773|ENST00000368021|USF1 ENSG00000158773|ENST00000368021|USF1 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2899475097656 2 479.290017 956.565481 -0.31795 -0.00015239 0.097212 4.6593E-05 -0.22074 -0.0001058 479.29007000676415 31.261 0.61574 34.99 34.681 35.296 3.7293 98 46 3 0 0 0 0.82752 1 5297 5297 11.64 3.047 1 171820 3636 3812 2313 2316 4577 4577 0.0854604682289164 DLKNKNLL 8 Unmodified _DLKNKNLL_ 0 0 0 ENSG00000158773|ENST00000368021|USF1;ENST00000472217.1_1_1:161009712-161010126:-|nuORF;nc|ENSG00000158773|P22415-2|USF1 ENSG00000158773|ENST00000368021|USF1 ENSG00000158773|ENST00000368021|USF1 MULTI-MSMS UPN47_class_I_Rep_3 4 479.2900085449219 2 479.290017 956.565481 -0.52711 -0.00025264 0.27506 0.00013183 -0.25205 -0.0001208 479.2902073208447 31.719 0.77799 35.019 34.654 35.432 3.2991 132 62 3 0 0 0 0.82752 3 5494 5417;5453;5494 26.884 6.1184 1 161550 3637 3812 2313 2316 4578;4579;4580 4580 0.0854604682289164 DLKNLQLDK 9 Unmodified _DLKNLQLDK_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MULTI-MSMS UPN47_class_I_Rep_1 2 543.810546875 2 543.811313 1085.60807 0.0024568 1.336E-06 -0.33337 -0.00018129 -0.33092 -0.00017996 543.8110592156456 37.233 0.4893 40.903 40.68 41.169 3.6692 57 36 2 0 0 0 0.30034 1 7042 7042 13.906 0 1 102200 3638 5182 2314 2317 4581 4581 0.06869397160448898 DLKNLQLDK 9 Unmodified _DLKNLQLDK_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.3131713867188 2 543.811313 1085.60807 -0.083298 -4.5299E-05 -0.084114 -4.5742E-05 -0.16741 -9.104E-05 543.8111512152052 37.787 0.55949 41.028 40.686 41.245 3.2414 66 41 2 0 0 0 0.43982 1 7284 7284 5.7319 0 1 68820 3639 5182 2314 2317 4582 4582 0.06869397160448898 DLKNQVKI 8 Unmodified _DLKNQVKI_ 0 0 0 REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2901306152344 2 479.290017 956.565481 -0.31795 -0.00015239 0.097212 4.6593E-05 -0.22074 -0.0001058 479.29007000676415 31.261 0.61574 34.99 34.681 35.296 3.7293 98 46 3 0 0 0 0.82752 1 5256 5256 11.64 0 1 171820 + 3640 18911 2315 2318 4583 4583 0.0854604682289164 DLKNQVKI 8 Unmodified _DLKNQVKI_ 0 0 0 REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS UPN47_class_I_Rep_2 3 479.29010009765625 2 479.290017 956.565481 -0.23315 -0.00011175 -0.04978 -2.3859E-05 -0.28293 -0.00013561 479.2900073655146 31.57 0.675 35.039 34.644 35.319 3.4691 105 56 2 0 0 0 0.82752 3 5267 5267;5302;5435 12.532 0 1 141560 + 3641 18911 2315 2318 4584;4585;4586 4584 0.0854604682289164 DLKNQVKI 8 Unmodified _DLKNQVKI_ 0 0 0 REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS UPN47_class_I_Rep_3 4 479.2902526855469 2 479.290017 956.565481 -0.52711 -0.00025264 0.27506 0.00013183 -0.25205 -0.0001208 479.2902073208447 31.719 0.77799 35.019 34.654 35.432 3.2991 132 62 3 0 0 0 0.82752 1 5536 5536 7.9102 0 1 161550 + 3642 18911 2315 2318 4587 4587 0.0854604682289164 DLKNSVQIY 9 Unmodified _DLKNSVQIY_ 0 0 0 L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|28|2|sense L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|28|2|sense L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.7933959960938 2 540.290214 1078.56587 0.42853 0.00023153 0.35604 0.00019237 0.78457 0.0004239 540.2902562024448 60.511 0.36684 63.892 63.756 64.123 3.3815 49 34 2 0 0 0 0.36392 1 14191 14191 10.074 0 1 138100 3643 8815 2316 2319 4588 4588 0.02973421752108152 DLKPKRYI 8 Unmodified _DLKPKRYI_ 0 0 0 REV__L1PA8_dup4447|chr9:37203310-37204830:-|3.028512834448597|0.0556918276518073|5.77|151.0|1|1|sense REV__L1PA8_dup4447|chr9:37203310-37204830:-|3.028512834448597|0.0556918276518073|5.77|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 516.8151245117188 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 24.814 1 28.564 28.064 29.064 3.7495 0 0 0 0.40625 1 3308 3308 2.3027 0 1 + 3644 30231 2317 2320 4589 4589 0.09822326093899392 DLKPKRYI 8 Unmodified _DLKPKRYI_ 0 0 0 REV__L1PA8_dup4447|chr9:37203310-37204830:-|3.028512834448597|0.0556918276518073|5.77|151.0|1|1|sense REV__L1PA8_dup4447|chr9:37203310-37204830:-|3.028512834448597|0.0556918276518073|5.77|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 516.815673828125 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 24.954 1 28.704 28.204 29.204 3.7495 0 0 0 0.40625 1 3348 3348 2.3027 0 1 + 3645 30231 2317 2320 4590 4590 0.09822326093899392 DLKPKRYI 8 Unmodified _DLKPKRYI_ 0 0 0 REV__L1PA8_dup4447|chr9:37203310-37204830:-|3.028512834448597|0.0556918276518073|5.77|151.0|1|1|sense REV__L1PA8_dup4447|chr9:37203310-37204830:-|3.028512834448597|0.0556918276518073|5.77|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 516.81494140625 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 25.46 1 28.811 28.311 29.311 3.3509 0 0 0 0.40625 1 3583 3583 2.3027 0 1 + 3646 30231 2317 2320 4591 4591 0.09822326093899392 DLKPRNIFL 9 Unmodified _DLKPRNIFL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000481134.1_1_3:142170107-142170575:+|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MSMS UPN47_class_I_Rep_1 2 558.33251953125 2 558.332216 1114.64988 NaN NaN NaN NaN NaN NaN NaN 54.05 1 57.578 57.078 58.078 3.5278 0 0 0 0.38478 1 12161 12161 4.3292 0 1 3647 1278 2318 2321 4592 4592 0.0971399763966474 DLKPRNIFL 9 Unmodified _DLKPRNIFL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000481134.1_1_3:142170107-142170575:+|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS UPN47_class_I_Rep_2 3 558.8339233398438 2 558.332216 1114.64988 0.51721 0.00028877 -0.25929 -0.00014477 0.25792 0.000144 558.3319419977599 54.083 0.48703 57.402 57.279 57.766 3.3187 37 25 2 0 0 0 0.41259 1 12263 12263 7.2892 0 1 79708 3648 1278 2318 2321 4593 4593 0.0971399763966474 DLKPRNIFL 9 Unmodified _DLKPRNIFL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000481134.1_1_3:142170107-142170575:+|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MSMS UPN47_class_I_Rep_3 4 558.3324584960938 2 558.332216 1114.64988 NaN NaN NaN NaN NaN NaN NaN 54.529 1 57.714 57.214 58.214 3.1856 0 0 0 0.38639 1 12389 12389 3.9444 0 1 3649 1278 2318 2321 4594 4594 0.0971399763966474 DLKQKVENL 9 Unmodified _DLKQKVENL_ 0 0 0 ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;ENSG00000277053.4,GTF2IP1,chr7,-,I16.1,75196797,75196973|31|36.07|1|intron;ENST00000544802.5_1_7:72593260-72619478:+|nuORF;ENSG00000277053.4,GTF2IP1,chr7,-,I16.1,75196797,75196973|31|36.07|2|intron;ENSG00000277053.4,GTF2IP1,chr7,-,I16.1,75196797,75196973|31|36.07|3|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|3|intron;ENSG00000277053.4,GTF2IP1,chr7,-,I16.1,75196797,75196973|31|36.07|5|intron;ENSG00000277053.4,GTF2IP1,chr7,-,I16.1,75196797,75196973|31|36.07|6|intron;ENSG00000277053.4,GTF2IP1,chr7,-,I16.1,75196797,75196973|31|36.07|4|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-MSMS UPN47_class_I_Rep_1 2 543.8114624023438 2 543.811313 1085.60807 0.0024568 1.336E-06 -0.33337 -0.00018129 -0.33092 -0.00017996 543.8110592156456 37.233 0.4893 40.903 40.68 41.169 3.6692 57 36 2 0 0 0 0.39745 2 7004 7004;7047 8.1555 2.4237 1 102200 3650 5791 2319 2322 4595;4596 4595 0.06869397160471635 DLKQLVDQK 9 Unmodified _DLKQLVDQK_ 0 0 0 ENSG00000132205|ENST00000254528|EMILIN2 ENSG00000132205|ENST00000254528|EMILIN2 ENSG00000132205|ENST00000254528|EMILIN2 MULTI-MSMS UPN47_class_I_Rep_3 4 543.8109130859375 2 543.811313 1085.60807 -0.083298 -4.5299E-05 -0.084114 -4.5742E-05 -0.16741 -9.104E-05 543.8111512152052 37.787 0.55949 41.028 40.686 41.245 3.2414 66 41 2 0 0 0 0.24936 1 7245 7245 17.113 1.8644 1 68820 3651 2737 2320 2323 4597 4597 0.06869397160471635 DLKREALI 8 Unmodified _DLKREALI_ 0 0 0 L1M1_dup1473|chr3:41859970-41861820:-|1.5791439916043386|0.0153681363738878|6.68|151.0|54|3|sense L1M1_dup1473|chr3:41859970-41861820:-|1.5791439916043386|0.0153681363738878|6.68|151.0|54|3|sense L1M1_dup1473|chr3:41859970-41861820:-|1.5791439916043386|0.0153681363738878|6.68|151.0|54|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.2894592285156 2 479.290017 956.565481 -0.52711 -0.00025264 0.27506 0.00013183 -0.25205 -0.0001208 479.2902073208447 31.719 0.77799 35.019 34.654 35.432 3.2991 132 62 3 0 0 0 0.82752 1 5379 5379 6.7232 0 1 161550 3652 8489 2321 2324 4598 4598 0.0854604682289164 DLKRVTVL 8 Unmodified _DLKRVTVL_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|90|2|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|90|2|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|90|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.2999267578125 2 472.300384 942.586216 -0.39628 -0.00018716 -0.40066 -0.00018923 -0.79693 -0.00037639 472.3000741858641 14.131 0.51934 17.606 17.499 18.018 3.475 125 64 3 0 0 0 0.82752 2 487 487;518 25.399 0 1 280630 3653 11905 2322 2325 4599;4600 4599 0.112626372025602 DLKRVTVL 8 Unmodified _DLKRVTVL_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|90|2|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|90|2|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|90|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2998962402344 2 472.300384 942.586216 -0.86679 -0.00040939 -0.18753 -8.8571E-05 -1.0543 -0.00049796 472.3001900445459 14.246 0.56478 17.616 17.478 18.043 3.3697 141 67 3 0 0 0 0.82752 1 526 526 10.824 0 1 192840 3654 11905 2322 2325 4601 4601 0.112626372025602 DLKSSKASL 9 Unmodified _DLKSSKASL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS UPN47_class_I_Rep_1 2 474.77178955078125 2 474.771657 947.528761 -0.3633 -0.00017249 0.12646 6.0039E-05 -0.23685 -0.00011245 474.77164574326696 21.658 0.56954 25.333 25.078 25.648 3.6749 108 59 2 0 0 0 0.20317 1 2385 2385 20.415 3.3016 1 139730 3655 2492 2323 2326 4602 4602 0.05289750206338795 DLKSSKASL 9 Unmodified _DLKSSKASL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS UPN47_class_I_Rep_2 3 474.771240234375 2 474.771657 947.528761 -0.28114 -0.00013348 -0.19861 -9.4296E-05 -0.47975 -0.00022777 474.7715444299571 21.979 0.6694 25.403 25.048 25.717 3.4241 136 70 3 0 0 0 0.04399 2 2523 2523;2554 51.415 3.8208 1 123650 3656 2492 2323 2326 4603;4604 4603 0.05289750206338795 DLKSSKASL 9 Unmodified _DLKSSKASL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS UPN47_class_I_Rep_3 4 474.7717590332031 2 474.771657 947.528761 -0.72155 -0.00034257 0.37394 0.00017754 -0.3476 -0.00016503 474.7718897621427 22.078 0.65436 25.427 25.129 25.783 3.3496 119 58 3 0 0 0 0.073198 2 2596 2560;2596 40.239 3.733 1 113400 3657 2492 2323 2326 4605;4606 4606 0.05289750206338795 DLKSSLKTG 9 Unmodified _DLKSSLKTG_ 0 0 0 ENST00000535658.1_1_16:57023523-57024688:+|nuORF ENST00000535658.1_1_16:57023523-57024688:+|nuORF ENST00000535658.1_1_16:57023523-57024688:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 474.77130126953125 2 474.771657 947.528761 -0.3633 -0.00017249 0.12646 6.0039E-05 -0.23685 -0.00011245 474.77164574326696 21.658 0.56954 25.333 25.078 25.648 3.6749 108 59 2 0 0 0 0.32682 1 2351 2351 12.241 0 1 139730 3658 7328 2324 2327 4607 4607 0.052897502063501634 DLKTELGKK 9 Unmodified _DLKTELGKK_ 0 0 0 ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B MULTI-MSMS UPN47_class_I_Rep_1 2 516.3084716796875 2 516.308406 1030.60226 -0.14137 -7.2991E-05 0.13243 6.8375E-05 -0.0089387 -4.6151E-06 516.3085061386441 39.762 0.63047 43.428 43.186 43.817 3.6668 90 46 3 0 0 0 0.43982 1 7785 7785 5.7319 0 1 156910 3659 4950 2325 2328 4608 4608 0.0881829864881638 DLKTGKSSL 9 Unmodified _DLKTGKSSL_ 0 0 0 REV__L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|127|3|sense REV__L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|127|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 474.77166748046875 2 474.771657 947.528761 -0.3633 -0.00017249 0.12646 6.0039E-05 -0.23685 -0.00011245 474.77164574326696 21.658 0.56954 25.333 25.078 25.648 3.6749 108 59 2 0 0 0 0.38714 1 2425 2425 8.7454 0 1 139730 + 3660 30196 2326 2329 4609 4609 0.05289750206338795 DLKTHQVL 8 Unmodified _DLKTHQVL_ 0 0 0 REV__L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|73|3|sense REV__L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|73|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 477.2746276855469 2 477.274367 952.53418 -0.25546 -0.00012193 0.099207 4.7349E-05 -0.15626 -7.4578E-05 477.27445869286964 31.498 0.87193 34.967 34.41 35.282 3.4691 99 69 2 0 0 0 0.82752 1 5260 5260 13.042 0.80181 1 78410 + 3661 28986 2327 2330 4610 4610 0.056014737887949195 DLLAPILKK 9 Unmodified _DLLAPILKK_ 0 0 0 REV__Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|41|2|sense REV__Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|41|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 505.834228515625 2 505.83406 1009.65357 -0.010064 -5.0905E-06 0.59915 0.00030307 0.58909 0.00029798 505.83426850498523 47.342 0.57175 51.037 50.595 51.167 3.6951 73 50 2 0 0 0 0.35081 1 10021 10021 10.824 0 1 386450 + 3662 32515 2328 2331 4611 4611 0.14912667413523195 DLLEDIRSY 9 Unmodified _DLLEDIRSY_ 0 0 0 ENSG00000197948|ENST00000435817|FCHSD1 ENSG00000197948|ENST00000435817|FCHSD1 ENSG00000197948|ENST00000435817|FCHSD1 MSMS UPN46_class_I_Rep_3 1 562.3349609375 2 562.285128 1122.5557 NaN NaN NaN NaN NaN NaN NaN 38.438 1 38.438 37.938 38.938 0 0 0 0 0.37692 1 7318 7318 6.2058 0 1 3663 5396 2329 2332 4612 4612 -0.0006718597312556085 DLLEKSFSL 9 Unmodified _DLLEKSFSL_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS UPN47_class_I_Rep_1 2 526.286865234375 2 526.28714 1050.55973 0.28423 0.00014959 -0.1855 -9.7626E-05 0.098731 5.1961E-05 526.2868522495712 67.761 0.56146 71.122 70.967 71.528 3.3611 84 43 3 0 0 0 0.061655 3 16373 16293;16335;16373 43.982 12.472 1 245450 3664 5266 2330 2333 4613;4614;4615 4615 0.03646903520575506 DLLEKSFSL 9 Unmodified _DLLEKSFSL_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS UPN47_class_I_Rep_2 3 526.28662109375 2 526.28714 1050.55973 0.063976 3.367E-05 -0.012727 -6.6981E-06 0.051249 2.6972E-05 526.2869431143723 68.117 0.54475 71.387 71.13 71.675 3.2696 77 45 2 0 0 0 0.038999 3 16495 16418;16457;16495 53.404 11.564 1 221710 3665 5266 2330 2333 4616;4617;4618 4618 0.03646903520575506 DLLEKSFSL 9 Unmodified _DLLEKSFSL_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS UPN47_class_I_Rep_3 4 526.28759765625 2 526.28714 1050.55973 0.35241 0.00018547 -0.42605 -0.00022423 -0.073639 -3.8755E-05 526.2868354771088 68.126 0.68527 71.324 71.004 71.689 3.1977 85 50 2 0 0 0 0.13455 3 16487 16487;16532;16580 27.223 5.6863 1 186460 3666 5266 2330 2333 4619;4620;4621 4619 0.03646903520575506 DLLGDIQTCIR 11 Unmodified _DLLGDIQTCIR_ 0 0 0 ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A ENSG00000132382|ENST00000254718|MYBBP1A ENSG00000132382|ENST00000254718|MYBBP1A MSMS UPN47_class_I_Rep_3 4 416.2278747558594 3 416.220184 1245.63872 NaN NaN NaN NaN NaN NaN NaN 29.972 1 33.296 32.796 33.796 3.3235 0 0 0 0.38417 1 4912 4912 0.32927 0 1 3667 2750 2331 2334 4622 4622 0.02572807483170436 DLLGTSRTSE 10 Unmodified _DLLGTSRTSE_ 0 0 0 REV__nc|ENSG00000120798|P13056-2|NR2C1 REV__nc|ENSG00000120798|P13056-2|NR2C1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.7727661132812 2 539.772385 1077.53022 0.46594 0.0002515 0.3548 0.00019151 0.82074 0.00044301 539.7726876456945 65.755 0.81576 69.206 68.893 69.709 3.4516 132 56 3 0 0 0 0.46742 2 14918 14918;15077 14.405 1.5328 1 1206400 + 3668 18713 2332 2335 4623;4624 4623 -0.005446604955523071 DLLGTSRTSE 10 Unmodified _DLLGTSRTSE_ 0 0 0 REV__nc|ENSG00000120798|P13056-2|NR2C1 REV__nc|ENSG00000120798|P13056-2|NR2C1 MULTI-MSMS UPN48_class_I_Rep_2 6 539.7728271484375 2 539.772385 1077.53022 0.49873 0.0002692 0.20116 0.00010858 0.6999 0.00037778 539.7726301879591 65.694 0.81879 69.178 68.732 69.551 3.4844 155 57 4 0 0 0 0.31534 4 14895 14895;14936;14978;15024 28.495 28.495 1 1092800 + 3669 18713 2332 2335 4625;4626;4627;4628 4625 -0.005446604955523071 DLLGTSRTSE 10 Unmodified _DLLGTSRTSE_ 0 0 0 REV__nc|ENSG00000120798|P13056-2|NR2C1 REV__nc|ENSG00000120798|P13056-2|NR2C1 MULTI-MSMS UPN48_class_I_Rep_3 7 539.7728271484375 2 539.772385 1077.53022 0.58812 0.00031745 0.14024 7.5698E-05 0.72836 0.00039315 539.7726123421813 65.489 0.90495 68.996 68.677 69.582 3.5077 159 62 4 0 0 0 0.40112 2 14898 14776;14898 19.362 19.362 1 955360 + 3670 18713 2332 2335 4629;4630 4630 -0.005446604955523071 DLLHCPHGSEG 11 Unmodified _DLLHCPHGSEG_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|214|3|anti-sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|214|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.7593383789062 2 582.758755 1163.50296 NaN NaN NaN NaN NaN NaN NaN 75.2 1 78.446 77.946 78.946 3.2464 0 0 0 0.38417 1 18642 18642 2.7352 0 1 + 3671 25069 2333 2336 4631 4631 -0.0722546730760314 DLLIAVKSV 9 Unmodified _DLLIAVKSV_ 0 0 0 ENSG00000237172|ENST00000449549|B3GNT9 ENSG00000237172|ENST00000449549|B3GNT9 ENSG00000237172|ENST00000449549|B3GNT9 MULTI-MSMS UPN47_class_I_Rep_2 3 479.3028564453125 2 479.302593 956.590633 0.098457 4.7191E-05 -0.15381 -7.3721E-05 -0.055351 -2.653E-05 479.30241827165787 66.806 0.87531 70.065 69.757 70.632 3.2588 108 66 2 0 0 0 0.26468 1 16024 16024 16.149 0 1 259140 3672 5690 2334 2337 4632 4632 0.11060101625469088 DLLIKGIND 9 Unmodified _DLLIKGIND_ 0 0 0 REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|98|3|sense REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|98|3|sense MSMS UPN48_class_I_Rep_2 6 500.7860412597656 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 72.945 1 76.51 76.01 77.01 3.5645 0 0 0 0.39598 1 17105 17105 1.6526 0.32309 1 + 3673 30385 2335 2338 4633 4633 0.06026323240428155 DLLKAQQEH 9 Unmodified _DLLKAQQEH_ 0 0 0 ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A ENST00000487055.1_1_5:132036305-132039285:-|nuORF ENST00000487055.1_1_5:132036305-132039285:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 541.284912109375 2 541.285463 1080.55637 0.42253 0.00022871 0.44828 0.00024265 0.87081 0.00047135 541.2855805983777 40.929 0.46111 44.68 44.436 44.897 3.7508 53 45 2 0 0 0 0.37599 1 7390 7390 9.3831 0.63772 1 118550 3674 2710 2336 2339 4634 4634 0.019316534665676954 DLLKAQQEH 9 Unmodified _DLLKAQQEH_ 0 0 0 ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A ENST00000487055.1_1_5:132036305-132039285:-|nuORF ENST00000487055.1_1_5:132036305-132039285:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 541.285463 1080.55637 0.44622 0.00024153 0.3046 0.00016488 0.75082 0.00040641 541.787094812242 41.316 0.037109 44.962 44.933 44.97 3.6458 0.16896 -0.00010598 NaN 9.3831 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 57780 3675 2710 2336 2339 0.019316534665676954 DLLKRQVL 8 Unmodified _DLLKRQVL_ 0 0 0 REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 492.8135681152344 2 492.813659 983.612765 -0.26865 -0.00013239 -0.41602 -0.00020502 -0.68466 -0.00033741 492.8135862193846 36.67 0.58721 40.339 40.104 40.691 3.6692 81 49 2 0 0 0 0.82752 1 6882 6882 43.858 0 1 86585 + 3676 32158 2337 2340 4635 4635 0.12030326093884014 DLLKRQVL 8 Unmodified _DLLKRQVL_ 0 0 0 REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant MULTI-MSMS UPN47_class_I_Rep_2 3 492.81329345703125 2 492.813659 983.612765 -0.11477 -5.6561E-05 -1.009 -0.00049726 -1.1238 -0.00055382 492.8135314176947 36.998 0.62381 40.397 40.135 40.759 3.3988 67 47 2 0 0 0 0.82752 1 7011 7011 22.736 0 1 92184 + 3677 32158 2337 2340 4636 4636 0.12030326093884014 DLLKRQVL 8 Unmodified _DLLKRQVL_ 0 0 0 REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 492.813659 983.612765 -0.26865 -0.00013239 -0.41602 -0.00020502 -0.68466 -0.00033741 492.8135862193846 36.67 0.58721 40.339 40.104 40.691 3.6692 -0.036792 0.00011449 NaN 22.736 81 49 2 NaN NaN NaN NaN 0 NaN NaN 0 86585 + 3678 32158 2337 2340 0.12030326093884014 DLLKRQVL 8 Unmodified _DLLKRQVL_ 0 0 0 REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant REV__PCDHA10|p.L195Q|1|0.32|ENSG00000250120|chr5:140856632-140856632|T/A|missense_variant MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 492.813659 983.612765 -0.11477 -5.6561E-05 -1.009 -0.00049726 -1.1238 -0.00055382 492.8135314176947 36.998 0.62381 40.397 40.135 40.759 3.3988 0.020643 -0.00047 NaN 22.736 67 47 2 NaN NaN NaN NaN 0 NaN NaN 0 92184 + 3679 32158 2337 2340 0.12030326093884014 DLLLCFLL 8 Unmodified _DLLLCFLL_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense;L1MB7_dup10310|chr8:129927764-129928192:+|1.1774967080308945|0.0056583458737917|7.7|150.0|25|2|anti-sense;L1MB8_dup10939|chr11:47828157-47829222:+|1.0303459878049834|0.03617499641216|4.83|150.0|52|2|anti-sense;L1MB7_dup14048|chr10:87099363-87100479:-|2.013557214343165|0.0883840948795991|4.51|151.0|54|1|anti-sense;L1MB8_dup5672|chr6:72767257-72768131:+|1.0440206847343891|0.0022339318404437|8.87|149.0|42|1|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_1 2 475.260009765625 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 39.023 1 42.689 42.189 43.189 3.6652 0 0 0 0.388 1 7586 7586 12.532 0 1 3680 10719 2338 2341 4637 4637 0.05909971833352756 DLLLPHPAA 9 Unmodified _DLLLPHPAA_ 0 0 0 ENST00000354181.7_1_15:34629839-34629938:-|nuORF ENST00000354181.7_1_15:34629839-34629938:-|nuORF ENST00000354181.7_1_15:34629839-34629938:-|nuORF MSMS UPN47_class_I_Rep_3 4 473.77301025390625 2 473.77146 945.528367 NaN NaN NaN NaN NaN NaN NaN 58.934 1 62.1 61.6 62.6 3.1658 0 0 0 0.1074 1 13732 13732 23.148 1.4018 1 3681 6275 2339 2342 4638 4638 0.05342375277132305 DLLNKCLTFH 10 Unmodified _DLLNKCLTFH_ 0 0 0 nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000503832.1_1_4:107169355-107172244:-|nuORF nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-3|TBCK MSMS UPN46_class_I_Rep_3 1 401.8779602050781 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 23.333 1 23.333 22.833 23.833 0 0 0 0 0.53105 1 2909 2909 0.69767 0.07084 1 3682 3392 2340 2343 4639 4639 0.018577436626401322 DLLRHHRI 8 Unmodified _DLLRHHRI_ 0 0 0 ENST00000399604.4_1_17:5084193-5085186:-|nuORF;ENSG00000180626|ENST00000575779|ZNF594 ENST00000399604.4_1_17:5084193-5085186:-|nuORF ENST00000399604.4_1_17:5084193-5085186:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 530.7857666015625 2 530.312149 1058.60975 -0.11189 -5.9336E-05 0.85412 0.00045295 0.74223 0.00039361 530.3125531364417 38.868 1.1739 42.106 41.574 42.748 3.238 161 83 2 0 0 0 0.82752 4 7467 7467;7476;7590;7613 5.2307 5.2307 1 136560 3683 4895 2341 2344 4640;4641;4642;4643 4640 0.0827849575973687 DLLRKVGAL 9 Unmodified _DLLRKVGAL_ 0 0 0 nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000072864|ENST00000396354|NDE1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000072864|Q9NXR1-1|NDE1;nc|ENSG00000166579|Q9GZM8-2|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 MULTI-MSMS UPN47_class_I_Rep_2 3 492.8136901855469 2 492.813659 983.612765 0.20021 9.8664E-05 0.01353 6.6677E-06 0.21374 0.00010533 492.81360941456836 48.347 0.94955 51.697 51.333 52.282 3.3492 108 49 3 0 0 0 0.10568 1 10467 10467 32.786 4.2988 1 294600 3684 1106 2342 2345 4644 4644 0.12030326093884014 DLLRKVGAL 9 Unmodified _DLLRKVGAL_ 0 0 0 nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000072864|ENST00000396354|NDE1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000072864|Q9NXR1-1|NDE1;nc|ENSG00000166579|Q9GZM8-2|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 MULTI-MSMS UPN47_class_I_Rep_3 4 492.8136901855469 2 492.813659 983.612765 0.17428 8.5889E-05 0.017666 8.7061E-06 0.19195 9.4595E-05 492.8135973649933 48.599 1.0147 51.834 51.341 52.356 3.2345 102 54 3 0 0 0 0.10568 1 10490 10490 32.786 4.2988 1 235580 3685 1106 2342 2345 4645 4645 0.12030326093884014 DLLRPGACGV 10 Unmodified _DLLRPGACGV_ 0 0 0 FRAM_dup3114|chr7:158742075-158742241:-|1.0620558543023757|0.2751812176117463|1.95|151.0|3|2|sense FRAM_dup3114|chr7:158742075-158742241:-|1.0620558543023757|0.2751812176117463|1.95|151.0|3|2|sense FRAM_dup3114|chr7:158742075-158742241:-|1.0620558543023757|0.2751812176117463|1.95|151.0|3|2|sense MSMS UPN47_class_I_Rep_3 4 500.7534484863281 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 62.745 1 65.914 65.414 66.414 3.1698 0 0 0 0.53105 1 14897 14897 3.2813 0.70383 1 3686 7778 2343 2346 4646 4646 0.017372299113503686 DLLTKERL 8 Unmodified _DLLTKERL_ 0 0 0 ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522884.5_1_5:156811334-156816436:+|nuORF;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1 ENSG00000055163|ENST00000620254|CYFIP2 ENSG00000055163|ENST00000620254|CYFIP2 MULTI-MSMS UPN47_class_I_Rep_2 3 494.29522705078125 2 494.295299 986.576045 -0.12933 -6.3925E-05 -0.039902 -1.9723E-05 -0.16923 -8.3648E-05 494.29521829111934 39.346 0.43172 42.725 42.534 42.966 3.3785 34 22 2 0 0 0 0.82752 1 7728 7728 19.362 1.2156 1 81929 3687 940 2344 2347 4647 4647 0.08222029477337855 DLLTKERL 8 Unmodified _DLLTKERL_ 0 0 0 ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522884.5_1_5:156811334-156816436:+|nuORF;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1 ENSG00000055163|ENST00000620254|CYFIP2 ENSG00000055163|ENST00000620254|CYFIP2 MSMS UPN47_class_I_Rep_3 4 494.2947692871094 2 494.295299 986.576045 NaN NaN NaN NaN NaN NaN NaN 39.425 1 42.663 42.163 43.163 3.238 0 0 0 0.38875 1 7787 7787 12.241 1.4167 1 3688 940 2344 2347 4648 4648 0.08222029477337855 DLLTKERL 8 Unmodified _DLLTKERL_ 0 0 0 ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522884.5_1_5:156811334-156816436:+|nuORF;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1 ENSG00000055163|ENST00000620254|CYFIP2 ENSG00000055163|ENST00000620254|CYFIP2 MSMS UPN47_class_I_Rep_3 4 494.29559326171875 2 494.295299 986.576045 NaN NaN NaN NaN NaN NaN NaN 39.567 1 42.805 42.305 43.305 3.238 0 0 0 0.37552 1 7832 7832 16.149 0 1 3689 940 2344 2347 4649 4649 0.08222029477337855 DLLTRLEK 8 Unmodified _DLLTRLEK_ 0 0 0 ENST00000493853.1_1_20:34328703-34329397:-|nuORF ENST00000493853.1_1_20:34328703-34329397:-|nuORF ENST00000493853.1_1_20:34328703-34329397:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.29486083984375 2 494.295299 986.576045 -0.12933 -6.3925E-05 -0.039902 -1.9723E-05 -0.16923 -8.3648E-05 494.29521829111934 39.346 0.43172 42.725 42.534 42.966 3.3785 34 22 2 0 0 0 0.82752 1 7683 7683 9.3831 0 1 81929 3690 7085 2345 2348 4650 4650 0.08222029477337855 DLLVIFVM 8 Unmodified _DLLVIFVM_ 0 0 0 REV__L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|17|3|sense REV__L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|17|3|sense MSMS UPN47_class_I_Rep_2 3 475.2602233886719 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 34.075 1 37.515 37.015 38.015 3.4398 0 0 0 0.38221 1 6117 6117 14.582 1.0738 1 + 3691 28230 2346 2349 4651 4651 0.059099718333413875 DLLVLTKK 8 Unmodified _DLLVLTKK_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS UPN47_class_I_Rep_1 2 465.3050537109375 2 465.305136 928.595718 -0.19492 -9.0696E-05 -0.85164 -0.00039627 -1.0466 -0.00048697 465.30477189893026 44.871 0.59187 48.571 48.307 48.899 3.6999 55 39 2 0 0 0 0.82752 1 9376 9376 14.838 0 1 104520 3692 4449 2347 2350 4652 4652 0.12856405488071232 DLLWQINQT 9 Unmodified _DLLWQINQT_ 0 0 0 MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|4|1|sense MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|4|1|sense MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 565.7974243164062 2 565.795663 1129.57677 NaN NaN NaN NaN NaN NaN NaN 42.334 1 42.334 41.834 42.834 0 0 0 0 0.38073 1 8373 8373 5.2969 1.7004 1 3693 15879 2348 2351 4653 4653 0.017168241263561868 DLLWQINQT 9 Unmodified _DLLWQINQT_ 0 0 0 MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|4|1|sense MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|4|1|sense MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 565.79736328125 2 565.795663 1129.57677 NaN NaN NaN NaN NaN NaN NaN 38.256 1 41.498 40.998 41.998 3.2414 0 0 0 0.39036 1 7427 7427 2.9952 0 1 3694 15879 2348 2351 4654 4654 0.017168241263561868 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_1 2 515.2882690429688 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 26.933 1 30.699 30.199 31.199 3.7662 0 0 0 0.070158 1 3930 3930 31.268 18.226 1 3695 2070 2349 2352 4655 4655 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_1 2 515.287841796875 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.051 1 30.817 30.317 31.317 3.7662 0 0 0 0.075414 1 3966 3966 29.841 7.1043 1 3696 2070 2349 2352 4656 4656 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_1 2 515.2879028320312 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.178 1 30.944 30.444 31.444 3.7662 0 0 0 0.20399 1 4002 4002 16.149 7.4037 1 3697 2070 2349 2352 4657 4657 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_1 2 515.2885131835938 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.297 1 31.064 30.564 31.564 3.7662 0 0 0 0.37891 1 4039 4039 5.7319 2.4505 1 3698 2070 2349 2352 4658 4658 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_2 3 515.287841796875 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.123 1 30.621 30.121 31.121 3.4986 0 0 0 0.081356 1 4025 4025 28.495 12.345 1 3699 2070 2349 2352 4659 4659 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_2 3 515.287841796875 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.249 1 30.748 30.248 31.248 3.4986 0 0 0 0.11827 1 4063 4063 21.537 8.4945 1 3700 2070 2349 2352 4660 4660 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_2 3 515.2882080078125 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.38 1 30.878 30.378 31.378 3.4986 0 0 0 0.098423 1 4102 4102 24.991 8.8419 1 3701 2070 2349 2352 4661 4661 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_2 3 515.2868041992188 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.462 1 30.961 30.461 31.461 3.4986 0 0 0 0.38784 1 4126 4126 3.5965 1.7523 1 3702 2070 2349 2352 4662 4662 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_2 3 515.2889404296875 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.525 1 31.023 30.523 31.523 3.4986 0 0 0 0.38784 1 4145 4145 3.5965 1.7523 1 3703 2070 2349 2352 4663 4663 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_3 4 515.2880249023438 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.202 1 30.545 30.045 31.045 3.3422 0 0 0 0.37891 1 4095 4095 5.7319 3.4291 1 3704 2070 2349 2352 4664 4664 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_3 4 515.2876586914062 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.344 1 30.686 30.186 31.186 3.3422 0 0 0 0.070158 1 4137 4137 31.268 13.122 1 3705 2070 2349 2352 4665 4665 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_3 4 515.2877807617188 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.465 1 30.808 30.308 31.308 3.3422 0 0 0 0.20399 1 4172 4172 16.149 7.4037 1 3706 2070 2349 2352 4666 4666 0.04831957329179204 DLNEKARAL 9 Unmodified _DLNEKARAL_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS UPN47_class_I_Rep_3 4 515.2880249023438 2 515.288005 1028.56146 NaN NaN NaN NaN NaN NaN NaN 27.596 1 30.938 30.438 31.438 3.3422 0 0 0 0.23173 1 4211 4211 14.405 6.7964 1 3707 2070 2349 2352 4667 4667 0.04831957329179204 DLNGKPKTI 9 Unmodified _DLNGKPKTI_ 0 0 0 L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.28741455078125 2 493.287474 984.560395 0.17637 8.6999E-05 0.65431 0.00032276 0.83067 0.00040976 493.28765793161733 62.613 0.69217 65.783 65.659 66.352 3.1698 60 38 2 0 0 0 0.47197 1 14906 14906 3.5965 0.31518 1 97886 3708 13690 2350 2353 4668 4668 0.06749742960278127 DLNGKPKTI 9 Unmodified _DLNGKPKTI_ 0 0 0 L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 493.287474 984.560395 0.15964 7.8748E-05 0.45332 0.00022362 0.61296 0.00030237 493.2875282492438 62.521 0.50056 65.888 65.614 66.114 3.3673 0.052737 -0.00012811 NaN 3.5965 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 70005 3709 13690 2350 2353 0.06749742960278127 DLNGKPKTI 9 Unmodified _DLNGKPKTI_ 0 0 0 L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|49|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 493.287474 984.560395 0.17637 8.6999E-05 0.65431 0.00032276 0.83067 0.00040976 493.28765793161733 62.613 0.69217 65.783 65.659 66.352 3.1698 -0.052737 7.017E-05 NaN 3.5965 60 38 2 NaN NaN NaN NaN 0 NaN NaN 0 97886 3710 13690 2350 2353 0.06749742960278127 DLNIHGYLF 9 Unmodified _DLNIHGYLF_ 0 0 0 MER2_dup6708|chr12:53463370-53463703:+|1.2888519958983002|0.0303734482093904|5.41|151.0|11|3|sense MER2_dup6708|chr12:53463370-53463703:+|1.2888519958983002|0.0303734482093904|5.41|151.0|11|3|sense MER2_dup6708|chr12:53463370-53463703:+|1.2888519958983002|0.0303734482093904|5.41|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 546.27978515625 2 546.279649 1090.54475 NaN NaN NaN NaN NaN NaN NaN 68.719 1 71.917 71.417 72.417 3.1977 0 0 0 0.37692 1 16715 16715 6.2058 1.3088 1 3711 15829 2351 2354 4669 4669 0.003094564432331026 DLNKKTAL 8 Unmodified _DLNKKTAL_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS UPN47_class_I_Rep_1 2 451.7686462402344 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 19.692 1 23.304 22.804 23.804 3.6118 0 0 0 0.40625 1 1856 1856 2.3027 0 1 + 3712 18606 2352 2355 4670 4670 0.0685807141450141 DLNNVLYNLS 10 Unmodified _DLNNVLYNLS_ 0 0 0 L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|66|3|anti-sense L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|66|3|anti-sense L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|66|3|anti-sense MSMS UPN47_class_I_Rep_2 3 582.7987060546875 2 582.798403 1163.58225 NaN NaN NaN NaN NaN NaN NaN 46.773 1 50.125 49.625 50.625 3.3515 0 0 0 0.53105 1 9981 9981 2.4985 0.19575 1 3713 11458 2353 2356 4671 4671 0.007005029181982536 DLNTKNEL 8 Unmodified _DLNTKNEL_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS UPN47_class_I_Rep_2 3 473.7453918457031 2 473.745639 945.476725 -0.29476 -0.00013964 -0.069887 -3.3109E-05 -0.36465 -0.00017275 473.7456226228526 30.409 0.53102 33.891 33.64 34.171 3.4821 64 41 2 0 0 0 0.82752 1 4998 4998 20.454 0 1 81673 3714 2280 2354 2357 4672 4672 0.001805867925554594 DLNVPRLTALK 11 Unmodified _DLNVPRLTALK_ 0 0 0 L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|5|1|sense L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|5|1|sense L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 620.376220703125 2 620.374612 1238.73467 NaN NaN NaN NaN NaN NaN NaN 51.837 1 55.43 54.93 55.93 3.5932 0 0 0 0.38417 1 11489 11489 0.96228 0.43751 1 3715 14547 2355 2358 4673 4673 0.12485323385590164 DLPEQKIRIV 10 Unmodified _DLPEQKIRIV_ 0 0 0 REV__ENSG00000134504|ENST00000580059|KCTD1 REV__ENSG00000134504|ENST00000580059|KCTD1 MSMS UPN47_class_I_Rep_3 4 404.2994384765625 3 404.243317 1209.70812 NaN NaN NaN NaN NaN NaN NaN 61.376 1 64.541 64.041 65.041 3.1651 0 0 0 0.53105 1 14474 14474 1.5923 0 1 + 3716 19101 2356 2359 4674 4674 0.11165634494250298 DLPERFQL 8 Unmodified _DLPERFQL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS UPN47_class_I_Rep_1 2 509.2715759277344 2 509.271824 1016.5291 0.26065 0.00013274 -0.17413 -8.8679E-05 0.086519 4.4062E-05 509.2717180685586 60.253 0.40028 63.651 63.297 63.697 3.3982 54 29 2 0 0 0 0.82752 1 14026 14026 13.906 3.8321 1 116140 3717 1888 2357 2360 4675 4675 0.021491699262014663 DLPERFQL 8 Unmodified _DLPERFQL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 509.271824 1016.5291 0.18223 9.2807E-05 -0.20603 -0.00010493 -0.0238 -1.2121E-05 509.2716320632804 60.573 0.21184 63.838 63.724 63.936 3.2654 0.11332 -0.00012885 NaN 13.906 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 62606 3718 1888 2357 2360 0.021491699262014663 DLPERFQL 8 Unmodified _DLPERFQL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.271824 1016.5291 0.1887 9.6097E-05 0.2667 0.00013582 0.45539 0.00023192 509.2719324598376 60.52 0.42159 63.685 63.4 63.822 3.1651 -0.039991 0.00035264 NaN 13.906 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 120950 3719 1888 2357 2360 0.021491699262014663 DLPGWTWDKG 10 Unmodified _DLPGWTWDKG_ 0 0 0 ENST00000330701.5_1_8:144333181-144341984:+|nuORF;ENST00000520584.5_1_8:144333229-144335235:+|nuORF ENST00000330701.5_1_8:144333181-144341984:+|nuORF ENST00000330701.5_1_8:144333181-144341984:+|nuORF MSMS UPN47_class_I_Rep_3 4 587.7821044921875 2 587.780013 1173.54547 NaN NaN NaN NaN NaN NaN NaN 28.379 1 31.713 31.213 32.213 3.3337 0 0 0 0.53105 1 4442 4442 1.3295 0.13619 1 3720 6183 2358 2361 4676 4676 -0.034357489077365244 DLPPKTNRD 9 Unmodified _DLPPKTNRD_ 0 0 0 REV__LCP2|p.S238N|1|0.04|ENSG00000043462|chr5:170266867-170266867|C/T|missense_variant REV__LCP2|p.S238N|1|0.04|ENSG00000043462|chr5:170266867-170266867|C/T|missense_variant MSMS UPN46_class_I_Rep_3 1 528.2799072265625 2 528.277638 1054.54072 NaN NaN NaN NaN NaN NaN NaN 90.587 1 90.587 90.087 91.087 0 0 0 0 0.39598 1 21848 21848 1.6526 0.32309 1 + 3721 30759 2359 2362 4677 4677 0.015633669495173308 DLPPLPWNT 9 Unmodified _DLPPLPWNT_ 0 0 0 REV__HERVL-int_dup1844|chr12:46732133-46733795:-|1.2879324847562292|0.0110653116725813|6.86|151.0|90|2|anti-sense REV__HERVL-int_dup1844|chr12:46732133-46733795:-|1.2879324847562292|0.0110653116725813|6.86|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7747802734375 2 526.7742 1051.53385 NaN NaN NaN NaN NaN NaN NaN 111.91 1 115.43 114.93 115.93 3.5226 0 0 0 0.39518 1 27256 27256 1.8442 0 1 + 3722 23871 2360 2363 4678 4678 0.010140540689462796 DLPVIDILKIE 11 Unmodified _DLPVIDILKIE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MSMS UPN46_class_I_Rep_3 1 634.3776245117188 2 634.379029 1266.7435 0.72468 0.00045972 -1.2479 -0.00079166 -0.52324 -0.00033193 634.3784626220952 107.33 0.099121 107.33 107.26 107.36 0 19 12 2 0 0 0 0.59712 1 26173 26173 5.2969 0.39987 1 25363000 3723 4065 2361 2364 4679 4679 0.12080252231430677 DLPVIDILKIE 11 Unmodified _DLPVIDILKIE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MSMS UPN46_class_I_Rep_3 1 634.3790283203125 2 634.379029 1266.7435 0.72494 0.00045988 -1.9086 -0.0012108 -1.1837 -0.0007509 634.378526666536 107.51 0.20739 107.51 107.4 107.61 0 44 28 2 0 0 0 0.59712 1 26200 26200 5.2969 0.39987 1 32927000 3724 4065 2361 2364 4680 4680 0.12080252231430677 DLPVIDILKIE 11 Unmodified _DLPVIDILKIE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MSMS UPN46_class_I_Rep_3 1 634.3744506835938 2 634.379029 1266.7435 0.72557 0.00046029 -2.1791 -0.0013824 -1.4536 -0.00092211 634.8779256949666 108.36 0.39332 108.36 108.29 108.68 0 85 48 3 0 0 0 0.4608 2 26479 26479;26493 8.7454 0.58988 1 8049400 3725 4065 2361 2364 4681;4682 4681 0.12080252231430677 DLPVIDILKIE 11 Unmodified _DLPVIDILKIE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 634.379029 1266.7435 0.63464 0.0004026 -3.1168 -0.0019772 -2.4822 -0.0015746 634.3772395670744 104.97 0.75192 108.5 108.45 109.2 3.5327 0.17653 -9.1116E-05 NaN 8.7454 342 117 3 NaN NaN NaN NaN 0 NaN NaN 0 33972000 3726 4065 2361 2364 0.12080252231430677 DLPVIDILKIE 11 Unmodified _DLPVIDILKIE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 634.379029 1266.7435 0.49743 0.00031556 -3.0953 -0.0019636 -2.5979 -0.001648 634.3772150860835 104.5 0.21999 108.2 108.17 108.39 3.6991 -0.1295 -6.3859E-05 NaN 8.7454 98 30 4 NaN NaN NaN NaN 0 NaN NaN 0 61720000 3727 4065 2361 2364 0.12080252231430677 DLPVIDILKIE 11 Unmodified _DLPVIDILKIE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 634.379029 1266.7435 0.6196 0.00039306 -3.0159 -0.0019132 -2.3963 -0.0015201 634.3772308272527 104.6 0.23857 108.32 108.19 108.42 3.7192 -0.0082675 3.6928E-05 NaN 8.7454 79 33 3 NaN NaN NaN NaN 0 NaN NaN 0 40817000 3728 4065 2361 2364 0.12080252231430677 DLQARITSL 9 Unmodified _DLQARITSL_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS UPN47_class_I_Rep_1 2 508.790283203125 2 508.790381 1015.56621 0.16472 8.3807E-05 -0.010144 -5.1611E-06 0.15457 7.8645E-05 508.79008419385434 53.787 0.54768 57.315 57.048 57.596 3.5278 48 33 2 0 0 0 0.21139 1 12052 12052 19.626 7.3853 1 113760 3729 1041 2362 2365 4683 4683 0.059048414719427456 DLQARITSL 9 Unmodified _DLQARITSL_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS UPN47_class_I_Rep_2 3 509.3041687011719 2 508.790381 1015.56621 0.22094 0.00011241 0.2563 0.0001304 0.47725 0.00024282 508.7902466872045 54.068 0.58923 57.387 57.073 57.662 3.3187 49 35 2 0 0 0 0.092386 1 12196 12196 35.612 12.954 1 122620 3730 1041 2362 2365 4684 4684 0.059048414719427456 DLQARITSL 9 Unmodified _DLQARITSL_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS UPN47_class_I_Rep_3 4 508.7900390625 2 508.790381 1015.56621 0.27701 0.00014094 -0.3084 -0.00015691 -0.031388 -1.597E-05 508.78997639783057 54.175 0.53436 57.361 57.128 57.663 3.1856 49 34 2 0 0 0 0.32682 1 12293 12293 12.241 1.4411 1 109160 3731 1041 2362 2365 4685 4685 0.059048414719427456 DLQARLRI 8 Unmodified _DLQARLRI_ 0 0 0 ENST00000497807.1_1_1:39934322-39950491:+|nuORF;ENST00000496360.5_1_1:39934274-39950491:+|nuORF ENST00000497807.1_1_1:39934322-39950491:+|nuORF ENST00000497807.1_1_1:39934322-39950491:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 492.80078125 2 492.801083 983.587613 -0.045611 -2.2477E-05 -1.1296 -0.00055665 -1.1752 -0.00057913 492.8004310430658 44.399 0.71741 47.643 47.34 48.057 3.2441 75 42 2 0 0 0 0.82752 1 9308 9308 2.3027 0 1 141680 3732 7100 2363 2366 4686 4686 0.09516271291306566 DLQEGIRAV 9 Unmodified _DLQEGIRAV_ 0 0 0 HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|30|2|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|30|2|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.77447509765625 2 500.774731 999.534909 -0.046311 -2.3191E-05 0.055156 2.7621E-05 0.0088449 4.4293E-06 500.7747110577189 43.889 0.63673 47.131 46.85 47.487 3.2419 70 39 3 0 0 0 0.37599 2 9140 9092;9140 9.3831 0.63772 1 145140 3733 8136 2364 2367 4687;4688 4688 0.035122684378507074 DLQGSRVLY 9 Unmodified _DLQGSRVLY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-3|LLGL2;nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-3|LLGL2 MULTI-MSMS UPN47_class_I_Rep_1 2 525.7820434570312 2 525.782556 1049.55056 -0.037734 -1.984E-05 0.0016521 8.6867E-07 -0.036081 -1.8971E-05 525.7824656077008 42.355 0.80191 46.035 45.704 46.506 3.6792 109 54 3 0 0 0 0.21527 1 8559 8559 19.257 1.122 1 194030 3734 1114 2365 2368 4689 4689 0.027765549549030766 DLQGSRVLY 9 Unmodified _DLQGSRVLY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-3|LLGL2;nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-3|LLGL2 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7821655273438 2 525.782556 1049.55056 0.016378 8.6113E-06 0.118 6.2044E-05 0.13438 7.0655E-05 525.7824905547996 42.91 0.80239 46.15 45.758 46.56 3.2394 93 52 2 0 0 0 0.30034 1 8754 8754 13.906 1.3745 1 152720 3735 1114 2365 2368 4690 4690 0.027765549549030766 DLQIWLMER 9 Unmodified _DLQIWLMER_ 0 0 0 ENST00000476555.5_1_6:24775798-24775852:+|nuORF ENST00000476555.5_1_6:24775798-24775852:+|nuORF ENST00000476555.5_1_6:24775798-24775852:+|nuORF MSMS UPN47_class_I_Rep_1 2 401.87750244140625 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 16.838 1 20.361 19.861 20.861 3.5224 0 0 0 0.40038 1 1152 1152 0.26902 0 1 3736 6970 2366 2369 4691 4691 0.018577436626628696 DLQLKTKG 8 Unmodified _DLQLKTKG_ 0 0 0 ENSG00000196605|ENST00000397902|ZNF846 ENSG00000196605|ENST00000397902|ZNF846 ENSG00000196605|ENST00000397902|ZNF846 MSMS UPN47_class_I_Rep_1 2 451.7686767578125 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 19.869 1 23.481 22.981 23.981 3.6118 0 0 0 0.40292 1 1901 1901 6.7232 0 1 3737 5323 2367 2370 4692 4692 0.06858071414524147 DLQRLKAK 8 Unmodified _DLQRLKAK_ 0 0 0 ENSG00000175084|ENST00000373960|DES ENSG00000175084|ENST00000373960|DES ENSG00000175084|ENST00000373960|DES MULTI-MSMS UPN47_class_I_Rep_1 2 486.30322265625 2 486.303458 970.592364 -0.25039 -0.00012176 0.080398 3.9098E-05 -0.16999 -8.2666E-05 486.3034032661533 41.294 1.3214 44.966 44.493 45.815 3.6719 251 100 4 0 0 0 0.82752 1 8435 8435 7.9102 0 1 939160 3738 4707 2368 2371 4693 4693 0.10589155434092845 DLQVHVKH 8 Unmodified _DLQVHVKH_ 0 0 0 nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS UPN46_class_I_Rep_3 1 488.2911682128906 2 488.272158 974.529764 NaN NaN NaN NaN NaN NaN NaN 25.125 1 25.125 24.625 25.625 0 0 0 0 0.40659 1 3400 3400 1.8442 0.36234 1 3739 1634 2369 2372 4694 4694 0.04148009365906091 DLQWWNDK 8 Unmodified _DLQWWNDK_ 0 0 0 LTR1B1_dup153|chr17:37322445-37323295:+|1.164299673152568|0.0212981482444481|5.77|151.0|2|1|sense LTR1B1_dup153|chr17:37322445-37323295:+|1.164299673152568|0.0212981482444481|5.77|151.0|2|1|sense LTR1B1_dup153|chr17:37322445-37323295:+|1.164299673152568|0.0212981482444481|5.77|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.7584838867188 2 552.759081 1103.50361 0.075328 4.1638E-05 0.25201 0.0001393 0.32734 0.00018094 552.7592048981452 42.365 0.66424 45.604 45.256 45.92 3.2394 77 46 2 0 0 0 0.82752 1 8610 8610 1.8442 0.19162 1 98376 3740 15591 2370 2373 4695 4695 -0.04400304596265414 DLRKLAVNM 9 Oxidation (M) _DLRKLAVNM(Oxidation (M))_ DLRKLAVNM(1) DLRKLAVNM(44) 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_1 2 538.2998657226562 2 538.300059 1074.58556 -0.0437 -2.3523E-05 0.068497 3.6872E-05 0.024797 1.3348E-05 538.3000074868892 33.327 0.88417 37.025 36.678 37.562 3.6983 103 58 2 0 0 0 0.062142 1 5881 5881 43.772 24.515 1 331580 3741 5222;5291;5787;6661 2371 2374 4696 4696 159 0.051254744912057504 DLRKLAVNM 9 Oxidation (M) _DLRKLAVNM(Oxidation (M))_ DLRKLAVNM(1) DLRKLAVNM(70) 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_2 3 538.2998657226562 2 538.300059 1074.58556 -0.0065426 -3.5219E-06 0.0073035 3.9315E-06 0.00076089 4.0959E-07 538.29995129756 33.522 0.89119 36.962 36.64 37.532 3.4398 135 59 3 0 0 0 0.0094161 2 5990 5950;5990 70.332 41.25 1 308900 3742 5222;5291;5787;6661 2371 2374 4697;4698 4698 159 0.051254744912057504 DLRKLAVNM 9 Oxidation (M) _DLRKLAVNM(Oxidation (M))_ DLRKLAVNM(1) DLRKLAVNM(86) 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_3 4 538.3001098632812 2 538.300059 1074.58556 -0.14991 -8.0695E-05 0.078653 4.2339E-05 -0.071254 -3.8356E-05 538.3000275332952 33.806 0.92349 37.08 36.678 37.602 3.2748 117 63 2 0 0 0 0.0070571 2 6068 6068;6109 86.332 44.492 1 477890 3743 5222;5291;5787;6661 2371 2374 4699;4700 4699 159 0.051254744912057504 DLRLAKQK 8 Unmodified _DLRLAKQK_ 0 0 0 L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|138|2|sense L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|138|2|sense L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|138|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 486.30328369140625 2 486.303458 970.592364 -0.25039 -0.00012176 0.080398 3.9098E-05 -0.16999 -8.2666E-05 486.3034032661533 41.294 1.3214 44.966 44.493 45.815 3.6719 251 100 4 0 0 0 0.82752 2 8400 8356;8400 13.508 0 1 939160 3744 15156 2372 2375 4701;4702 4702 0.10589155434092845 DLRLLVSR 8 Unmodified _DLRLLVSR_ 0 0 0 MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|8|2|sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|8|2|sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.30352783203125 2 486.303458 970.592364 -0.14549 -7.0752E-05 0.073791 3.5885E-05 -0.071699 -3.4868E-05 486.30338061976215 41.681 1.3854 45.047 44.598 45.984 3.3655 239 106 4 0 0 0 0.82752 2 8316 8316;8519 5.7319 0.97584 1 802090 3745 16288 2373 2376 4703;4704 4703 0.10589155434104214 DLRLLVSR 8 Unmodified _DLRLLVSR_ 0 0 0 MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|8|2|sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|8|2|sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.3032531738281 2 486.303458 970.592364 -0.23738 -0.00011544 -0.016919 -8.2277E-06 -0.2543 -0.00012367 486.3034343220658 41.733 1.4216 44.97 44.585 46.006 3.2372 260 112 3 0 0 0 0.82752 1 8430 8430 13.906 0.39817 1 736630 3746 16288 2373 2376 4705 4705 0.10589155434104214 DLRLTRVF 8 Unmodified _DLRLTRVF_ 0 0 0 REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.3035583496094 2 510.303458 1018.59236 0.31916 0.00016287 0.026567 1.3557E-05 0.34572 0.00017642 510.30339954409203 109.91 0.044304 113.58 113.55 113.6 3.6715 7 3 3 0 0 0 0.82752 1 26171 26171 6.7232 0 1 3677300 + 3747 31220 2374 2377 4706 4706 0.08381155434096854 DLRLTRVF 8 Unmodified _DLRLTRVF_ 0 0 0 REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 510.303458 1018.59236 0.31886 0.00016272 -0.5797 -0.00029582 -0.26084 -0.00013311 510.3031643244243 113.73 0.033707 113.73 113.72 113.75 0 -0.15167 -0.00026651 NaN 6.7232 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 176390 + 3748 31220 2374 2377 0.08381155434096854 DLRLTRVF 8 Unmodified _DLRLTRVF_ 0 0 0 REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 510.303458 1018.59236 0.22627 0.00011547 -0.043696 -2.2298E-05 0.18258 9.317E-05 510.3034102474219 110.28 0.052719 113.91 113.87 113.92 3.6326 0.028009 0.00028054 NaN 6.7232 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 67331 + 3749 31220 2374 2377 0.08381155434096854 DLRLTRVF 8 Unmodified _DLRLTRVF_ 0 0 0 REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 510.303458 1018.59236 0.31916 0.00016287 0.026567 1.3557E-05 0.34572 0.00017642 510.30339954409203 109.91 0.044304 113.58 113.55 113.6 3.6715 -0.30361 0.00035225 NaN 6.7232 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 3677300 + 3750 31220 2374 2377 0.08381155434096854 DLRLTRVF 8 Unmodified _DLRLTRVF_ 0 0 0 REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense REV__MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|52|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 510.303458 1018.59236 0.28268 0.00014425 0.18256 9.316E-05 0.46524 0.00023741 510.3031807985348 110.41 0.020706 114.08 114.07 114.09 3.67 0.19706 0.00051146 NaN 6.7232 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 45108 + 3751 31220 2374 2377 0.08381155434096854 DLRLVNKK 8 Unmodified _DLRLVNKK_ 0 0 0 HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|52|1|anti-sense HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|52|1|anti-sense HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|52|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.31134033203125 2 493.311284 984.608014 -0.0085119 -4.199E-06 0.07621 3.7595E-05 0.067698 3.3396E-05 493.3111936252639 45.043 0.6496 48.287 48.027 48.676 3.2441 74 45 2 0 0 0 0.82752 1 9498 9498 13.508 2.684 1 103210 3752 8434 2375 2378 4707 4707 0.11509441951136523 DLRNKAKG 8 Unmodified _DLRNKAKG_ 0 0 0 LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.262939453125 2 451.264333 900.514114 -0.39683 -0.00017908 -0.5454 -0.00024612 -0.94223 -0.0004252 451.26388722453345 26.352 0.65704 30.114 29.783 30.44 3.7624 74 59 2 0 0 0 0.82752 3 3687 3687;3730;3763 4.756 0 1 75624 3753 15720 2376 2379 4708;4709;4710 4708 0.059877228488517176 DLRNKAKG 8 Unmodified _DLRNKAKG_ 0 0 0 LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 451.2637939453125 2 451.264333 900.514114 NaN NaN NaN NaN NaN NaN NaN 26.491 1 29.985 29.485 30.485 3.4945 0 0 0 0.40404 1 3841 3841 5.2307 0 1 3754 15720 2376 2379 4711 4711 0.059877228488517176 DLRNKAKG 8 Unmodified _DLRNKAKG_ 0 0 0 LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.2637939453125 2 451.264333 900.514114 -0.90743 -0.00040949 -0.015375 -6.9383E-06 -0.92281 -0.00041643 451.2641077615225 26.672 0.74868 30.019 29.757 30.506 3.3478 92 63 2 0 0 0 0.82752 3 3962 3923;3962;4068 8.5933 0 1 79138 3755 15720 2376 2379 4712;4713;4714 4713 0.059877228488517176 DLRPSLALSRR 11 Unmodified _DLRPSLALSRR_ 0 0 0 REV__AluSz_dup89191|chr17:75593359-75593635:+|1.1087842912462524|0.2651578432752104|2.06|151.0|19|3|anti-sense REV__AluSz_dup89191|chr17:75593359-75593635:+|1.1087842912462524|0.2651578432752104|2.06|151.0|19|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 642.3823852539062 2 642.38076 1282.74697 0.43623 0.00028023 2.0346 0.001307 2.4708 0.0015872 642.3817843832089 107.91 0.20095 111.54 111.47 111.67 3.6313 30 15 3 0 0 0 0.56174 1 26045 26045 6.1918 0.46 1 2022900 + 3756 17213 2377 2380 4715 4715 0.11690359848626031 DLRTRVVL 8 Unmodified _DLRTRVVL_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENST00000476486.5_1_7:65444492-65445384:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_1 2 486.30328369140625 2 486.303458 970.592364 -0.25039 -0.00012176 0.080398 3.9098E-05 -0.16999 -8.2666E-05 486.3034032661533 41.294 1.3214 44.966 44.493 45.815 3.6719 251 100 4 0 0 0 0.82752 3 8278 8236;8278;8319 47.749 7.7914 1 939160 3757 4446 2378 2381 4716;4717;4718 4717 0.10589155434081476 DLRTRVVL 8 Unmodified _DLRTRVVL_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENST00000476486.5_1_7:65444492-65445384:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_2 3 486.30316162109375 2 486.303458 970.592364 -0.14549 -7.0752E-05 0.073791 3.5885E-05 -0.071699 -3.4868E-05 486.30338061976215 41.681 1.3854 45.047 44.598 45.984 3.3655 239 106 4 0 0 0 0.82752 3 8359 8359;8396;8474 43.858 7.7313 1 802090 3758 4446 2378 2381 4719;4720;4721 4719 0.10589155434081476 DLRTRVVL 8 Unmodified _DLRTRVVL_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENST00000476486.5_1_7:65444492-65445384:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_3 4 486.30328369140625 2 486.303458 970.592364 -0.23738 -0.00011544 -0.016919 -8.2277E-06 -0.2543 -0.00012367 486.3034343220658 41.733 1.4216 44.97 44.585 46.006 3.2372 260 112 3 0 0 0 0.82752 2 8471 8471;8509 53.833 15.859 1 736630 3759 4446 2378 2381 4722;4723 4722 0.10589155434081476 DLRTTSTL 8 Unmodified _DLRTTSTL_ 0 0 0 nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-3|SENP7 nc|ENSG00000138468|Q9BQF6-4|SENP7 nc|ENSG00000138468|Q9BQF6-4|SENP7 MSMS UPN47_class_I_Rep_1 2 453.747314453125 2 453.748182 905.481811 NaN NaN NaN NaN NaN NaN NaN 34.586 1 38.272 37.772 38.772 3.6859 0 0 0 0.3978 1 6243 6243 8.7454 2.0222 1 3760 3092 2379 2382 4724 4724 0.025288906552077606 DLRVLRSL 8 Unmodified _DLRVLRSL_ 0 0 0 ENST00000372458.7_1_1:43830941-43833680:-|nuORF;ENST00000397833.3_1_12:93096699-93100325:+|nuORF;ENST00000465321.5_1_1:43830941-43833656:-|nuORF ENST00000372458.7_1_1:43830941-43833680:-|nuORF ENST00000372458.7_1_1:43830941-43833680:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.3033752441406 2 486.303458 970.592364 -0.23738 -0.00011544 -0.016919 -8.2277E-06 -0.2543 -0.00012367 486.3034343220658 41.733 1.4216 44.97 44.585 46.006 3.2372 260 112 3 0 0 0 0.82752 1 8554 8554 19.257 0 1 736630 3761 6399 2380 2383 4725 4725 0.10589155434081476 DLSCPSHPCPL 11 Unmodified _DLSCPSHPCPL_ 0 0 0 ENSG00000139437.18,TCHP,chr12,+,I9.1,109908938,109911062|46|6.7|2|intron ENSG00000139437.18,TCHP,chr12,+,I9.1,109908938,109911062|46|6.7|2|intron ENSG00000139437.18,TCHP,chr12,+,I9.1,109908938,109911062|46|6.7|2|intron MSMS UPN47_class_I_Rep_1 2 584.7854614257812 2 584.759909 1167.50526 NaN NaN NaN NaN NaN NaN NaN 51.894 1 55.488 54.988 55.988 3.5932 0 0 0 0.38417 1 11506 11506 3.2813 0.28607 1 3762 3141 2381 2384 4726 4726 -0.0717875489413018 DLSEHVTL 8 Unmodified _DLSEHVTL_ 0 0 0 ENST00000475645.1_1_6:106634320-106634398:-|nuORF ENST00000475645.1_1_6:106634320-106634398:-|nuORF ENST00000475645.1_1_6:106634320-106634398:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 457.2347106933594 2 457.234907 912.455261 -0.47881 -0.00021893 0.31505 0.00014405 -0.16376 -7.4878E-05 457.2349568755481 36.407 0.94969 39.818 39.492 40.442 3.4114 153 71 3 0 0 0 0.82752 1 6813 6813 40.449 2.2974 1 439550 3763 6958 2382 2385 4727 4727 -0.004467982361234135 DLSKWGKIL 9 Unmodified _DLSKWGKIL_ 0 0 0 L1M5_dup13218|chr4:54034417-54036280:-|3.976657523710191|0.1435744283365991|4.79|151.0|21|1|sense L1M5_dup13218|chr4:54034417-54036280:-|3.976657523710191|0.1435744283365991|4.79|151.0|21|1|sense L1M5_dup13218|chr4:54034417-54036280:-|3.976657523710191|0.1435744283365991|4.79|151.0|21|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.3116455078125 2 530.313492 1058.61243 -0.16428 -8.7118E-05 -1.1536 -0.00061176 -1.3179 -0.00069888 530.3125928227203 38.719 1.0672 42.098 41.669 42.736 3.3785 99 71 2 0 0 0 0.31407 1 7447 7447 13.042 0 1 122330 3764 9096 2383 2386 4728 4728 0.08546906374067476 DLSLFVYIH 9 Unmodified _DLSLFVYIH_ 0 0 0 REV__LTR101_Mam_dup686|chr10:75533061-75533796:+|3.6563983439983856|0.0101192225251205|8.5|147.0|14|2|sense REV__LTR101_Mam_dup686|chr10:75533061-75533796:+|3.6563983439983856|0.0101192225251205|8.5|147.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 553.7958984375 2 553.797675 1105.5808 NaN NaN NaN NaN NaN NaN NaN 62.307 1 65.474 64.974 65.974 3.1667 0 0 0 0.34056 1 14762 14762 8.5933 0 1 + 3765 30776 2384 2387 4729 4729 0.03222913620084 DLSVKAQYK 9 Unmodified _DLSVKAQYK_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MSMS UPN48_class_I_Rep_2 6 526.2962036132812 2 526.292756 1050.57096 NaN NaN NaN NaN NaN NaN NaN 35.211 1 38.885 38.385 39.385 3.6735 0 0 0 0.39598 1 5774 5774 1.6526 0 1 3766 1255 2385 2388 4730 4730 0.04769725614710296 DLTHKQVL 8 Unmodified _DLTHKQVL_ 0 0 0 REV__L1PREC2_dup5878|chr12:45159491-45162067:-|1.2307912645149452|0.0366975938926386|5.07|151.0|79|3|sense REV__L1PREC2_dup5878|chr12:45159491-45162067:-|1.2307912645149452|0.0366975938926386|5.07|151.0|79|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 477.2740478515625 2 477.274367 952.53418 -0.32309 -0.0001542 0.080889 3.8606E-05 -0.2422 -0.0001156 477.2743391490797 31.094 0.78254 34.823 34.472 35.255 3.7293 79 60 2 0 0 0 0.82752 1 5126 5126 6.7232 0 1 73671 + 3767 30737 2386 2389 4731 4731 0.056014737887949195 DLTKSRLF 8 Unmodified _DLTKSRLF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.28179931640625 2 490.282192 978.549831 -0.10805 -5.2973E-05 -0.20078 -9.8439E-05 -0.30883 -0.00015141 490.28229209024204 41.478 0.63427 44.844 44.554 45.188 3.3655 93 51 2 0 0 0 0.82752 1 8332 8332 7.9102 0 1 120230 + 3768 17799 2387 2390 4732 4732 0.05969760305845284 DLTKSRLF 8 Unmodified _DLTKSRLF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 490.282192 978.549831 -0.24726 -0.00012123 0.07543 3.6982E-05 -0.17183 -8.4246E-05 490.28223565006334 41.137 0.71479 44.809 44.476 45.19 3.6719 -0.041628 6.9128E-05 NaN 7.9102 100 57 2 NaN NaN NaN NaN 0 NaN NaN 0 142450 + 3769 17799 2387 2390 0.05969760305845284 DLTKSRLF 8 Unmodified _DLTKSRLF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 490.282192 978.549831 -0.10805 -5.2973E-05 -0.20078 -9.8439E-05 -0.30883 -0.00015141 490.28229209024204 41.478 0.63427 44.844 44.554 45.188 3.3655 -0.0068589 -0.00020171 NaN 7.9102 93 51 2 NaN NaN NaN NaN 0 NaN NaN 0 120230 + 3770 17799 2387 2390 0.05969760305845284 DLTKSRLF 8 Unmodified _DLTKSRLF_ 0 0 0 REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 490.282192 978.549831 -0.20675 -0.00010137 0.084904 4.1627E-05 -0.12185 -5.9739E-05 490.28232573531017 41.662 0.53253 44.899 44.585 45.117 3.2372 0.048487 7.8418E-05 NaN 7.9102 85 47 2 NaN NaN NaN NaN 0 NaN NaN 0 110890 + 3771 17799 2387 2390 0.05969760305845284 DLTRRVVL 8 Unmodified _DLTRRVVL_ 0 0 0 REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|192|3|anti-sense REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|192|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.303466796875 2 486.303458 970.592364 -0.23738 -0.00011544 -0.016919 -8.2277E-06 -0.2543 -0.00012367 486.3034343220658 41.733 1.4216 44.97 44.585 46.006 3.2372 260 112 3 0 0 0 0.82752 1 8663 8663 3.9444 0 1 736630 + 3772 23777 2388 2391 4733 4733 0.10589155434081476 DLTTFIYHY 9 Unmodified _DLTTFIYHY_ 0 0 0 REV__nc|ENSG00000164418|Q13002-3|GRIK2 REV__nc|ENSG00000164418|Q13002-3|GRIK2 MSMS UPN47_class_I_Rep_3 4 586.78759765625 2 586.784764 1171.55498 NaN NaN NaN NaN NaN NaN NaN 54.911 1 58.091 57.591 58.591 3.1805 0 0 0 0.38639 1 12506 12506 3.9444 0.66309 1 + 3773 20064 2389 2392 4734 4734 -0.02393980622196068 DLTTFIYHY 9 Unmodified _DLTTFIYHY_ 0 0 0 REV__nc|ENSG00000164418|Q13002-3|GRIK2 REV__nc|ENSG00000164418|Q13002-3|GRIK2 MSMS UPN47_class_I_Rep_3 4 586.7874145507812 2 586.784764 1171.55498 NaN NaN NaN NaN NaN NaN NaN 55.103 1 58.281 57.781 58.781 3.1779 0 0 0 0.28335 1 12565 12565 11.64 5.4345 1 + 3774 20064 2389 2392 4735 4735 -0.02393980622196068 DLVEINFKY 9 Unmodified _DLVEINFKY_ 0 0 0 L1MA1_dup1720|chr7:26797073-26799072:+|1.1749407053228798|0.0183533026152834|6.0|148.0|18|1|sense L1MA1_dup1720|chr7:26797073-26799072:+|1.1749407053228798|0.0183533026152834|6.0|148.0|18|1|sense L1MA1_dup1720|chr7:26797073-26799072:+|1.1749407053228798|0.0183533026152834|6.0|148.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 570.8024291992188 2 570.800414 1139.58628 NaN NaN NaN NaN NaN NaN NaN 44.801 1 48.157 47.657 48.657 3.3556 0 0 0 0.39598 1 9379 9379 1.6526 0.17072 1 3775 9271 2390 2393 4736 4736 0.022065924119033298 DLVGQSVLF 9 Unmodified _DLVGQSVLF_ 0 0 0 REV__L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|140|3|anti-sense REV__L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|140|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 489.2685241699219 2 489.26875 976.522947 0.30241 0.00014796 -0.16447 -8.0471E-05 0.13793 6.7486E-05 489.2685991502992 76.747 0.57335 80.079 79.81 80.383 3.3315 92 59 2 0 0 0 0.36392 1 18957 18957 10.074 0 1 99385 + 3776 26014 2391 2394 4737 4737 0.03374651694662134 DLVIRLTQPP 10 Unmodified _DLVIRLTQPP_ 0 0 0 AluSc_dup32925|chr20:3936839-3937136:-|1.0174605939286612|0.1590351633034742|2.68|151.0|15|1|anti-sense AluSc_dup32925|chr20:3936839-3937136:-|1.0174605939286612|0.1590351633034742|2.68|151.0|15|1|anti-sense AluSc_dup32925|chr20:3936839-3937136:-|1.0174605939286612|0.1590351633034742|2.68|151.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 576.3431396484375 2 576.342781 1150.67101 0.47818 0.0002756 -0.15188 -8.7535E-05 0.3263 0.00018806 576.3424611206899 107.85 0.1852 111.53 111.47 111.66 3.6813 46 18 3 0 0 0 0.505 1 25505 25505 11.495 5.2889 1 16317000 3777 204 2392 2395 4738 4738 0.10169962948521061 DLVKKKKKRRK 11 Unmodified _DLVKKKKKRRK_ 0 0 0 REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS MSMS UPN46_class_I_Rep_3 1 476.3265380859375 3 476.327938 1425.96199 NaN NaN NaN NaN NaN NaN NaN 31.621 1 31.621 31.121 32.121 0 0 0 0 0.38417 1 5308 5308 0.073264 0.073264 1 + 3778 18458 2393 2396 4739 4739 0.26604326384244814 DLVKKNRV 8 Unmodified _DLVKKNRV_ 0 0 0 L1MCa_dup4588|chrX:136715398-136715910:+|1.6193008195219956|0.0313770990525823|5.69|151.0|31|3|anti-sense;L1MCa_dup4717|chr10:856356-857407:+|1.2111231161820986|0.0227266158686152|5.74|150.0|43|1|anti-sense L1MCa_dup4588|chrX:136715398-136715910:+|1.6193008195219956|0.0313770990525823|5.69|151.0|31|3|anti-sense L1MCa_dup4588|chrX:136715398-136715910:+|1.6193008195219956|0.0313770990525823|5.69|151.0|31|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.3032531738281 2 486.303458 970.592364 -0.14549 -7.0752E-05 0.073791 3.5885E-05 -0.071699 -3.4868E-05 486.30338061976215 41.681 1.3854 45.047 44.598 45.984 3.3655 239 106 4 0 0 0 0.82752 1 8612 8612 2.3027 0 1 802090 3779 11813 2394 2397 4740 4740 0.10589155434092845 DLVKKYIL 8 Unmodified _DLVKKYIL_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475276-40475366:-|nuORF nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_2 3 496.3128967285156 2 496.312961 990.611368 0.2219 0.00011013 -0.071541 -3.5507E-05 0.15036 7.4625E-05 496.31264556736284 49.519 0.79596 52.862 52.514 53.31 3.3431 74 51 2 0 0 0 0.82752 1 10794 10794 26.884 5.137 1 126060 3780 4382 2395 2398 4741 4741 0.11568692005130288 DLVKLKYL 8 Unmodified _DLVKLKYL_ 0 0 0 ENSG00000198798|ENST00000361644|MAGEB3 ENSG00000198798|ENST00000361644|MAGEB3 ENSG00000198798|ENST00000361644|MAGEB3 MULTI-MSMS UPN47_class_I_Rep_1 2 496.3125305175781 2 496.312961 990.611368 -0.010796 -5.3582E-06 0.010952 5.4355E-06 0.0001557 7.7274E-08 496.3128675444192 49.111 0.6398 52.77 52.487 53.127 3.6592 66 47 2 0 0 0 0.82752 1 10609 10609 15.847 0 1 149320 3781 5462 2396 2399 4742 4742 0.11568692005130288 DLVKLKYL 8 Unmodified _DLVKLKYL_ 0 0 0 ENSG00000198798|ENST00000361644|MAGEB3 ENSG00000198798|ENST00000361644|MAGEB3 ENSG00000198798|ENST00000361644|MAGEB3 MULTI-MSMS UPN47_class_I_Rep_2 3 496.3130187988281 2 496.312961 990.611368 0.2219 0.00011013 -0.071541 -3.5507E-05 0.15036 7.4625E-05 496.31264556736284 49.519 0.79596 52.862 52.514 53.31 3.3431 74 51 2 0 0 0 0.82752 1 10845 10845 14.838 0 1 126060 3782 5462 2396 2399 4743 4743 0.11568692005130288 DLVKLKYL 8 Unmodified _DLVKLKYL_ 0 0 0 ENSG00000198798|ENST00000361644|MAGEB3 ENSG00000198798|ENST00000361644|MAGEB3 ENSG00000198798|ENST00000361644|MAGEB3 MULTI-MSMS UPN47_class_I_Rep_3 4 496.3126525878906 2 496.312961 990.611368 0.24308 0.00012065 -0.072451 -3.5958E-05 0.17063 8.4687E-05 496.31278617932634 49.812 0.59879 53.038 52.61 53.209 3.2262 51 32 2 0 0 0 0.82752 1 10933 10933 16.942 0 1 110360 3783 5462 2396 2399 4744 4744 0.11568692005130288 DLVNLSSIRK 10 Unmodified _DLVNLSSIRK_ 0 0 0 MER4D1_dup1518|chr22:49591591-49592468:+|1.935336998600664|0.0513502798087427|5.24|149.0|32|1|anti-sense MER4D1_dup1518|chr22:49591591-49592468:+|1.935336998600664|0.0513502798087427|5.24|149.0|32|1|anti-sense MER4D1_dup1518|chr22:49591591-49592468:+|1.935336998600664|0.0513502798087427|5.24|149.0|32|1|anti-sense MSMS UPN48_class_I_Rep_3 7 572.8380126953125 2 572.837862 1143.66117 NaN NaN NaN NaN NaN NaN NaN 64.998 1 68.505 68.005 69.005 3.5077 0 0 0 0.53105 1 14654 14654 8.1555 0 1 3784 16036 2397 2400 4745 4745 0.09508774943151366 DLVPFVYF 8 Unmodified _DLVPFVYF_ 0 0 0 L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|101|3|anti-sense L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|101|3|anti-sense L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|101|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 500.25836181640625 2 500.262936 998.51132 -0.17874 -8.9417E-05 -2.9472 -0.0014744 -3.126 -0.0015638 500.76458890280657 26.111 0.091169 29.606 29.547 29.638 3.4945 9 6 2 0 0 0 0.82752 1 3723 3723 10.183 0 1 49669 3785 8757 2398 2401 4746 4746 0.012004546713342279 DLVQQKKV 8 Unmodified _DLVQQKKV_ 0 0 0 REV__L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|172|3|sense REV__L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|172|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2893371582031 2 479.290017 956.565481 -0.31795 -0.00015239 0.097212 4.6593E-05 -0.22074 -0.0001058 479.29007000676415 31.261 0.61574 34.99 34.681 35.296 3.7293 98 46 3 0 0 0 0.82752 2 5152 5152;5309 2.5775 0 1 171820 + 3786 29747 2399 2402 4747;4748 4747 0.08546046822903008 DLVRPLFLS 9 Unmodified _DLVRPLFLS_ 0 0 0 REV__ENSG00000186895|ENST00000334134|FGF3 REV__ENSG00000186895|ENST00000334134|FGF3 MULTI-MSMS UPN47_class_I_Rep_2 3 530.3128662109375 2 530.313492 1058.61243 -0.16428 -8.7118E-05 -1.1536 -0.00061176 -1.3179 -0.00069888 530.3125928227203 38.719 1.0672 42.098 41.669 42.736 3.3785 99 71 2 0 0 0 0.17897 1 7501 7501 22.736 0 1 122330 + 3787 20911 2400 2403 4749 4749 0.08546906374044738 DLVVKKEL 8 Unmodified _DLVVKKEL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS UPN47_class_I_Rep_1 2 472.29443359375 2 472.294768 942.574983 -0.32388 -0.00015297 -0.21015 -9.9251E-05 -0.53403 -0.00025222 472.2944477832225 33.749 0.49407 37.447 37.209 37.704 3.6983 55 34 2 0 0 0 0.82752 2 5961 5961;6010 22.736 0 1 88691 3788 5006 2401 2404 4750;4751 4750 0.10139815108436778 DLVVKKEL 8 Unmodified _DLVVKKEL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS UPN47_class_I_Rep_2 3 472.2938537597656 2 472.294768 942.574983 -0.3115 -0.00014712 -0.60569 -0.00028606 -0.91719 -0.00043318 472.29433239043306 34.041 0.61508 37.481 37.186 37.801 3.4398 59 39 2 0 0 0 0.82752 2 6069 6069;6120 20.415 0 1 79922 3789 5006 2401 2404 4752;4753 4752 0.10139815108436778 DLVVKKEL 8 Unmodified _DLVVKKEL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS UPN47_class_I_Rep_3 4 472.2939147949219 2 472.294768 942.574983 -0.56606 -0.00026735 -0.64214 -0.00030328 -1.2082 -0.00057063 472.29432224266094 34.282 0.58283 37.557 37.205 37.788 3.2748 72 39 2 0 0 0 0.82752 3 6192 6192;6231;6243 22.736 0 1 103090 3790 5006 2401 2404 4754;4755;4756 4754 0.10139815108436778 DLWFGVVI 8 Unmodified _DLWFGVVI_ 0 0 0 L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|264|1|anti-sense L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|264|1|anti-sense L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|264|1|anti-sense MSMS UPN47_class_I_Rep_2 3 474.77178955078125 2 474.763104 947.511654 NaN NaN NaN NaN NaN NaN NaN 21.803 1 25.227 24.727 25.727 3.4241 0 0 0 0.4032 1 2491 2491 6.3541 0 1 3791 11253 2402 2405 4757 4757 0.03579874391186877 DLWHLRPMH 9 Unmodified _DLWHLRPMH_ 0 0 0 REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1 REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1 MSMS UPN47_class_I_Rep_3 4 402.2059631347656 3 402.20632 1203.59713 NaN NaN NaN NaN NaN NaN NaN 17.459 1 20.818 20.318 21.318 3.3581 0 0 0 0.4007 1 1280 1280 0.23584 0.028987 1 + 3792 20411 2403 2406 4758 4758 0.0034771630519117025 DLWLGLWW 8 Unmodified _DLWLGLWW_ 0 0 0 REV__nc|ENSG00000140798|Q96J65-5|ABCC12 REV__nc|ENSG00000140798|Q96J65-5|ABCC12 MSMS UPN48_class_I_Rep_2 6 544.7831420898438 2 544.781828 1087.5491 NaN NaN NaN NaN NaN NaN NaN 28.568 1 32.199 31.699 32.699 3.6311 0 0 0 0.40604 1 3946 3946 2.5775 0.078994 1 + 3793 19357 2404 2407 4759 4759 0.008829656567968414 DLWQLFVP 8 Unmodified _DLWQLFVP_ 0 0 0 REV__nc|ENSG00000100330|Q13615-3|MTMR3 REV__nc|ENSG00000100330|Q13615-3|MTMR3 MSMS UPN47_class_I_Rep_1 2 509.2720642089844 2 509.273835 1016.53312 NaN NaN NaN NaN NaN NaN NaN 60.311 1 63.709 63.209 64.209 3.3982 0 0 0 0.39996 1 14068 14068 7.9102 0 1 + 3794 18106 2405 2408 4760 4760 0.025512594198971783 DLYDLYYEY 9 Unmodified _DLYDLYYEY_ 0 0 0 REV__nc|ENSG00000170262|Q8TCY5-2|MRAP REV__nc|ENSG00000170262|Q8TCY5-2|MRAP MSMS UPN47_class_I_Rep_2 3 628.7687377929688 2 628.771519 1255.52849 NaN NaN NaN NaN NaN NaN NaN 43.921 1 47.279 46.779 47.779 3.358 0 0 0 0.39518 1 9108 9108 1.8442 0 1 + 3795 20354 2406 2409 4761 4761 -0.08905714304182766 DLYHLLAR 8 Unmodified _DLYHLLAR_ 0 0 0 REV__ENSG00000134815|ENST00000328771|DHX34 REV__ENSG00000134815|ENST00000328771|DHX34 MSMS UPN48_class_I_Rep_3 7 500.30499267578125 2 500.782359 999.550165 NaN NaN NaN NaN NaN NaN NaN 58.001 1 61.533 61.033 62.033 3.5317 0 0 0 0.4044 1 12529 12529 4.756 0.42677 1 + 3796 19112 2407 2410 4762 4762 0.050371800257153154 DLYPNFIVKA 10 Unmodified _DLYPNFIVKA_ 0 0 0 L1MD3_dup4222|chr15:72515364-72515933:-|1.4497059595056223|0.0491446844489983|4.88|151.0|35|2|anti-sense L1MD3_dup4222|chr15:72515364-72515933:-|1.4497059595056223|0.0491446844489983|4.88|151.0|35|2|anti-sense L1MD3_dup4222|chr15:72515364-72515933:-|1.4497059595056223|0.0491446844489983|4.88|151.0|35|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 590.3233032226562 2 590.324057 1178.63356 0.58332 0.00034434 0.1241 7.3258E-05 0.70741 0.0004176 590.3239525786469 57.652 0.77652 61.166 60.816 61.593 3.5142 129 57 3 0 0 0 0.54822 1 12592 12592 5.7319 0 1 475420 3797 12075 2408 2411 4763 4763 0.051388716829023906 DLYQVRTAR 9 Unmodified _DLYQVRTAR_ 0 0 0 nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9 nc|ENSG00000256950|O00233-2|PSMD9 nc|ENSG00000256950|O00233-2|PSMD9 MULTI-MSMS UPN48_class_I_Rep_2 6 561.305419921875 2 561.306729 1120.59891 0.41568 0.00023333 -0.24322 -0.00013652 0.17246 9.6802E-05 561.3064829531166 44.208 0.22279 47.97 47.843 48.066 3.7617 26 16 2 0 0 0 0.47197 2 8426 8399;8426 3.5965 0.49676 1 122650 3798 1953 2409 2412 4764;4765 4765 0.04343048594796528 DLYTKSKL 8 Unmodified _DLYTKSKL_ 0 0 0 REV__ENST00000530163.1_1_11:74340223-74351808:+|nuORF REV__ENST00000530163.1_1_11:74340223-74351808:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 484.2766418457031 2 484.276575 966.538597 -0.32259 -0.00015622 0.04776 2.3129E-05 -0.27483 -0.0001331 484.27652999664474 27.158 0.63547 30.924 30.605 31.241 3.7662 76 49 2 0 0 0 0.82752 1 3970 3970 9.3831 0 1 79608 + 3799 17880 2410 2413 4766 4766 0.05398938211715176 DLYTRFDTL 9 Unmodified _DLYTRFDTL_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS UPN47_class_I_Rep_1 2 572.2881469726562 2 572.287671 1142.56079 0.34705 0.00019861 0.01748 1.0004E-05 0.36453 0.00020861 572.2873679724928 64.417 0.63557 67.772 67.526 68.162 3.3557 131 65 3 0 0 0 0.038999 2 15382 15316;15382 53.404 17.277 1 260660 3800 971 2411 2414 4767;4768 4768 -0.004788821105421448 DLYTRFDTL 9 Unmodified _DLYTRFDTL_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS UPN47_class_I_Rep_2 3 572.2867431640625 2 572.287671 1142.56079 0.3883 0.00022222 0.016386 9.3776E-06 0.40469 0.0002316 572.2874398358974 64.675 0.69168 67.931 67.703 68.395 3.2556 89 55 2 0 0 0 0.10225 3 15385 15385;15426;15517 33.445 11.908 1 167450 3801 971 2411 2414 4769;4770;4771 4769 -0.004788821105421448 DLYTRFDTL 9 Unmodified _DLYTRFDTL_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS UPN47_class_I_Rep_3 4 572.2877197265625 2 572.287671 1142.56079 0.43341 0.00024803 0.0906 5.1849E-05 0.52401 0.00029988 572.287567917814 64.779 0.69043 67.959 67.626 68.317 3.1795 113 54 3 0 0 0 0.04399 4 15556 15442;15445;15549;15556 51.415 17.014 1 186980 3802 971 2411 2414 4772;4773;4774;4775 4775 -0.004788821105421448 DLYWQSEEC 9 Unmodified _DLYWQSEEC_ 0 0 0 REV__L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|194|1|anti-sense REV__L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|194|1|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7342529296875 2 586.731871 1171.44919 NaN NaN NaN NaN NaN NaN NaN 119.21 1 122.83 122.33 123.33 3.6189 0 0 0 0.38478 1 29090 29090 4.3292 0.73274 1 + 3803 30096 2412 2415 4776 4776 -0.12967684529962753 DLYWRIFHAQ 10 Unmodified _DLYWRIFHAQ_ 0 0 0 L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|151|2|anti-sense L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|151|2|anti-sense L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|151|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 450.23101806640625 3 450.231412 1347.67241 -0.0048628 -2.1894E-06 -0.40546 -0.00018255 -0.41032 -0.00018474 450.5654950434567 48.15 0.55592 51.671 51.428 51.984 3.5219 45 37 2 0 0 0 0.84575 1 9530 9530 0.69767 0.07084 1 98264 3804 8652 2413 2416 4777 4777 0.012475970372634038 DLYYSLSNSN 10 Unmodified _DLYYSLSNSN_ 0 0 0 REV__L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|128|1|anti-sense REV__L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|128|1|anti-sense MSMS UPN48_class_I_Rep_2 6 588.2622680664062 2 588.264393 1174.51423 NaN NaN NaN NaN NaN NaN NaN 21.861 1 25.507 25.007 26.007 3.6459 0 0 0 0.53105 1 2137 2137 1.3295 0.36726 1 + 3805 30708 2414 2417 4778 4778 -0.06604366732472045 DMDCPCNCDD 10 Unmodified _DMDCPCNCDD_ 0 0 0 REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF REV__ENST00000431629.5_2_7:114654517-114655986:+|nuORF MSMS UPN46_class_I_Rep_3 1 565.6484985351562 2 565.64831 1129.28207 NaN NaN NaN NaN NaN NaN NaN 68.809 1 68.809 68.309 69.309 0 0 0 0 0.53105 1 15731 15731 0 0 1 + 3806 19130 2415 2418 4779 4779 -0.27740359733070363 DMDETGDSDDC 11 Unmodified _DMDETGDSDDC_ 0 0 0 REV__nc|ENSG00000186487|Q9UL68-4|MYT1L REV__nc|ENSG00000186487|Q9UL68-4|MYT1L MSMS UPN47_class_I_Rep_3 4 601.6782836914062 2 601.676633 1201.33871 NaN NaN NaN NaN NaN NaN NaN 118.31 1 121.73 121.23 122.23 3.4238 0 0 0 0.38417 1 29172 29172 1.1933 0.79263 1 + 3807 20893 2416 2419 4780 4780 -0.2539031737114783 DMDKVLLKY 9 Oxidation (M) _DM(Oxidation (M))DKVLLKY_ DM(1)DKVLLKY DM(73)DKVLLKY 0 0 1 nc|ENSG00000068305|Q02078|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;nc|ENSG00000116604|Q14814-3|MEF2D;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;ENSG00000116604|ENST00000348159|MEF2D nc|ENSG00000068305|Q02078|MEF2A nc|ENSG00000068305|Q02078|MEF2A MULTI-MSMS UPN47_class_I_Rep_1 2 570.8021240234375 2 570.8021 1139.58965 -0.044843 -2.5597E-05 0.042323 2.4158E-05 -0.00252 -1.4384E-06 570.8020887212477 39.868 1.105 43.535 43.095 44.2 3.6668 219 82 4 0 0 0 0.0067715 5 7809 7769;7809;7848;7885;7924 73.196 33.247 1 725150 3808 16632 2417 2420 4781;4782;4783;4784;4785 4782 179 0.025435191942506208 DMDKVLLKY 9 Oxidation (M) _DM(Oxidation (M))DKVLLKY_ DM(1)DKVLLKY DM(78)DKVLLKY 0 0 1 nc|ENSG00000068305|Q02078|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;nc|ENSG00000116604|Q14814-3|MEF2D;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;ENSG00000116604|ENST00000348159|MEF2D nc|ENSG00000068305|Q02078|MEF2A nc|ENSG00000068305|Q02078|MEF2A MULTI-MSMS UPN47_class_I_Rep_2 3 570.802001953125 2 570.8021 1139.58965 0.045109 2.5748E-05 0.10753 6.1377E-05 0.15264 8.7126E-05 570.8020846240565 40.175 1.2185 43.547 43.1 44.318 3.3712 205 86 3 0 0 0 0.0055684 4 7952 7913;7952;7994;8033 78.06 38.111 1 521400 3809 16632 2417 2420 4786;4787;4788;4789 4787 179 0.025435191942506208 DMDKVLLKY 9 Oxidation (M) _DM(Oxidation (M))DKVLLKY_ DM(1)DKVLLKY DM(61)DKVLLKY 0 0 1 nc|ENSG00000068305|Q02078|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;nc|ENSG00000116604|Q14814-3|MEF2D;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;ENSG00000116604|ENST00000348159|MEF2D nc|ENSG00000068305|Q02078|MEF2A nc|ENSG00000068305|Q02078|MEF2A MULTI-MSMS UPN47_class_I_Rep_3 4 570.8021240234375 2 570.8021 1139.58965 -0.022706 -1.2961E-05 0.0055586 3.1729E-06 -0.017148 -9.788E-06 570.8020552703977 40.349 1.1751 43.586 43.086 44.261 3.2372 183 76 3 0 0 0 0.023676 3 8080 8001;8042;8080 61.09 29.327 1 543270 3810 16632 2417 2420 4790;4791;4792 4792 179 0.025435191942506208 DMEDLNNFKH 10 Unmodified _DMEDLNNFKH_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|16|2|sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 631.7767944335938 2 631.777145 1261.53974 -0.25529 -0.00016129 0.039572 2.5001E-05 -0.21572 -0.00013629 631.7772171520904 24.699 0.67452 28.05 27.945 28.619 3.3509 79 50 2 0 0 0 0.56309 1 3483 3483 1.6526 0.32309 1 61002 + 3811 26506 2418 2421 4793 4793 -0.08057215481699131 DMEDQGFECE 10 Unmodified _DMEDQGFECE_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS UPN48_class_I_Rep_3 7 601.7030639648438 2 601.702454 1201.39035 NaN NaN NaN NaN NaN NaN NaN 63.824 1 67.333 66.833 67.833 3.5083 0 0 0 0.53105 1 14300 14300 1.6526 1.1279 1 + 3812 20254 2419 2422 4794 4794 -0.2022852888660509 DMEKKLLR 8 Unmodified _DMEKKLLR_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense MSMS UPN47_class_I_Rep_1 2 516.7977294921875 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.16 116.66 117.66 3.572 0 0 0 0.40604 1 28034 28034 2.5775 0 1 3813 14689 2420 2423 4795 4795 0.06522375979534445 DMEKKLLR 8 Unmodified _DMEKKLLR_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense MSMS UPN47_class_I_Rep_1 2 516.796630859375 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 114.66 1 118.24 117.74 118.74 3.5809 0 0 0 0.40604 1 28339 28339 2.5775 0 1 3814 14689 2420 2423 4796 4796 0.06522375979534445 DMEKKLLR 8 Unmodified _DMEKKLLR_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense MSMS UPN48_class_I_Rep_2 6 516.7972412109375 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 114.74 1 118.4 117.9 118.9 3.6616 0 0 0 0.40604 1 27439 27439 2.5775 0 1 3815 14689 2420 2423 4797 4797 0.06522375979534445 DMEKKLLR 8 Unmodified _DMEKKLLR_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.796630859375 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 21.73 1 25.445 24.945 25.945 3.7144 0 0 0 0.40604 1 2095 2095 2.5775 0 1 3816 14689 2420 2423 4798 4798 0.06522375979534445 DMEKKLLR 8 Unmodified _DMEKKLLR_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|309|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.79736328125 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 112.32 1 115.98 115.48 116.48 3.6614 0 0 0 0.40604 1 26683 26683 2.5775 0 1 3817 14689 2420 2423 4799 4799 0.06522375979534445 DMELEIIL 8 Unmodified _DMELEIIL_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|47|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|47|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|47|3|sense MSMS UPN46_class_I_Rep_3 1 488.28985595703125 2 488.256994 974.499434 NaN NaN NaN NaN NaN NaN NaN 26.706 1 26.706 26.206 27.206 0 0 0 0 0.40604 1 3859 3859 2.5775 0 1 3818 16552 2421 2424 4800 4800 0.011164698658490124 DMEPLKKD 8 Unmodified _DMEPLKKD_ 0 0 0 REV__nc|ENSG00000170606|P34932-2|HSPA4 REV__nc|ENSG00000170606|P34932-2|HSPA4 MSMS UPN47_class_I_Rep_3 4 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.977 1 28.328 27.828 28.828 3.3509 0 0 0 0.4044 1 3437 3437 4.756 0.81161 1 + 3819 20372 2422 2425 4801 4801 -0.013975849367511728 DMERLIKK 8 Unmodified _DMERLIKK_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN47_class_I_Rep_1 2 516.7965087890625 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 24.105 1 27.835 27.335 28.335 3.7298 0 0 0 0.40604 1 3096 3096 2.5775 0 1 3820 2200 2423 2426 4802 4802 0.06522375979557182 DMERLIKK 8 Unmodified _DMERLIKK_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN47_class_I_Rep_1 2 516.7984619140625 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 45.423 1 49.123 48.623 49.623 3.6999 0 0 0 0.40604 1 9539 9539 2.5775 0 1 3821 2200 2423 2426 4803 4803 0.06522375979557182 DMERLIKK 8 Unmodified _DMERLIKK_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN47_class_I_Rep_1 2 516.797607421875 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 114.1 1 117.67 117.17 118.17 3.572 0 0 0 0.40604 1 28182 28182 2.5775 0 1 3822 2200 2423 2426 4804 4804 0.06522375979557182 DMERLIKK 8 Unmodified _DMERLIKK_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN47_class_I_Rep_2 3 516.8155517578125 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 25.17 1 28.653 28.153 29.153 3.483 0 0 0 0.40604 1 3456 3456 2.5775 0 1 3823 2200 2423 2426 4805 4805 0.06522375979557182 DMERLIKK 8 Unmodified _DMERLIKK_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN47_class_I_Rep_2 3 516.7971801757812 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 114.66 1 118.16 117.66 118.66 3.5039 0 0 0 0.40604 1 27926 27926 2.5775 0 1 3824 2200 2423 2426 4806 4806 0.06522375979557182 DMERLIKK 8 Unmodified _DMERLIKK_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN48_class_I_Rep_2 6 516.7975463867188 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 112.54 1 116.2 115.7 116.7 3.6648 0 0 0 0.40604 1 26818 26818 2.5775 0 1 3825 2200 2423 2426 4807 4807 0.06522375979557182 DMHSQTSSFTG 11 Unmodified _DMHSQTSSFTG_ 0 0 0 REV__nc|ENSG00000228970|P0CB48|UBTFL6 REV__nc|ENSG00000228970|P0CB48|UBTFL6 MSMS UPN48_class_I_Rep_3 7 598.8115234375 2 599.245677 1196.4768 NaN NaN NaN NaN NaN NaN NaN 69.214 1 72.724 72.224 73.224 3.5094 0 0 0 0.38417 1 15928 15928 1.0715 0.27783 1 + 3826 32109 2424 2427 4808 4808 -0.11357781269748557 DMISSPVVLE 10 Unmodified _DMISSPVVLE_ 0 0 0 REV__MER21A_dup262|chr2:161182176-161183062:-|1.805894682397405|0.0698423648938619|4.69|151.0|16|2|sense REV__MER21A_dup262|chr2:161182176-161183062:-|1.805894682397405|0.0698423648938619|4.69|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 544.7937622070312 2 545.278457 1088.54236 NaN NaN NaN NaN NaN NaN NaN 66.487 1 69.938 69.438 70.438 3.4516 0 0 0 0.53105 1 15208 15208 1.4819 0.68827 1 + 3827 31184 2425 2428 4809 4809 0.0016323992324487335 DMISSVAYL 9 Unmodified _DMISSVAYL_ 0 0 0 REV__L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|4|1|sense REV__L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.7469177246094 2 499.746793 997.479033 0.34639 0.00017311 -0.054962 -2.7467E-05 0.29142 0.00014564 499.74671914418127 60.133 0.89308 63.607 63.138 64.031 3.4737 124 66 2 0 0 0 0.33654 2 13164 13164;13374 11.64 0 1 171400 + 3828 26123 2426 2429 4810;4811 4810 -0.0198070079397894 DMISSVAYL 9 Unmodified _DMISSVAYL_ 0 0 0 REV__L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|4|1|sense REV__L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 499.7472229003906 2 499.746793 997.479033 0.36353 0.00018167 -0.089769 -4.4862E-05 0.27376 0.00013681 499.74669748812676 60.178 0.90873 63.665 63.067 63.975 3.4868 138 74 2 0 0 0 0.33654 1 13330 13330 11.64 0 1 222580 + 3829 26123 2426 2429 4812 4812 -0.0198070079397894 DMLGDDGVFLY 11 Unmodified _DMLGDDGVFLY_ 0 0 0 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 MSMS UPN46_class_I_Rep_3 1 415.77423095703125 3 415.52164 1243.54309 NaN NaN NaN NaN NaN NaN NaN 98.58 1 98.58 98.08 99.08 0 0 0 0 0.38417 1 24004 24004 0.45452 0.31463 1 3830 4188 2427 2430 4813 4813 -0.06893965427684634 DMLRILPMT 9 Unmodified _DMLRILPMT_ 0 0 0 REV__ENSG00000197818|ENST00000361573|SLC9A8 REV__ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS UPN46_class_I_Rep_3 1 545.2935180664062 2 545.293388 1088.57222 0.089797 4.8966E-05 0.35259 0.00019226 0.44238 0.00024123 545.2935949644965 28.634 0.5414 28.634 28.299 28.84 0 50 37 2 0 0 0 0.49026 1 4412 4412 1.6526 0.17072 1 97057 + 3831 21098 2428 2431 4814 4814 0.031479003876256684 DMLRYRFF 8 Unmodified _DMLRYRFF_ 0 0 0 L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|62|1|anti-sense L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|62|1|anti-sense L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7952880859375 2 574.289494 1146.56443 0.39675 0.00022785 3.1637 0.0018169 3.5604 0.0020447 574.7951545845409 59.679 0.63742 63.077 62.806 63.444 3.3982 58 38 2 0 0 0 0.82752 1 13953 13953 4.756 0.42677 1 120860 3832 11844 2429 2432 4815 4815 -0.002984908176586032 DMMAMLQWP 9 Unmodified _DMMAMLQWP_ 0 0 0 REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|145|3|anti-sense REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|145|3|anti-sense MSMS UPN47_class_I_Rep_2 3 561.6640014648438 2 561.742673 1121.47079 NaN NaN NaN NaN NaN NaN NaN 114.68 1 118.18 117.68 118.68 3.5039 0 0 0 0.39518 1 27930 27930 1.8442 0.19162 1 + 3833 30968 2430 2433 4816 4816 -0.08508294306602693 DMPRVGKLI 9 Unmodified _DMPRVGKLI_ 0 0 0 L1MB3_dup13209|chr14:91191903-91192487:+|1.0341877785724607|0.0587840367666109|4.14|151.0|4|1|sense L1MB3_dup13209|chr14:91191903-91192487:+|1.0341877785724607|0.0587840367666109|4.14|151.0|4|1|sense L1MB3_dup13209|chr14:91191903-91192487:+|1.0341877785724607|0.0587840367666109|4.14|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.7999877929688 2 514.799694 1027.58484 -0.20595 -0.00010602 0.10882 5.6018E-05 -0.097138 -5.0006E-05 514.7996322967737 39.514 0.75292 42.752 42.476 43.229 3.238 79 52 2 0 0 0 0.48846 1 7914 7914 1.8442 0 1 131910 3834 10339 2431 2434 4817 4817 0.072146798421727 DMYCLVGRIY 10 Unmodified _DMYCLVGRIY_ 0 0 0 ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|6|intron;MAP3K5|p.A1077Gfs*2|1|0.07|ENSG00000197442|chr6:136583736-136583737|-/C|frameshift_variant;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|7|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|10|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|2|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|2|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|1|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|6|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|4|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|5|intron ENSG00000197442|ENST00000359015|MAP3K5 ENSG00000197442|ENST00000359015|MAP3K5 MSMS UPN47_class_I_Rep_1 2 616.7959594726562 2 616.793752 1231.57295 NaN NaN NaN NaN NaN NaN NaN 28.546 1 32.312 31.812 32.812 3.7662 0 0 0 0.53105 1 4412 4412 1.6526 0 1 3835 5371 2432 2435 4818 4818 -0.03357304963333263 DMYHHAQLIF 10 Unmodified _DMYHHAQLIF_ 0 0 0 AluJo_dup76732|chr22:19948373-19948668:+|1.1280731086370028|0.0736874643840056|3.94|151.0|17|2|anti-sense AluJo_dup76732|chr22:19948373-19948668:+|1.1280731086370028|0.0736874643840056|3.94|151.0|17|2|anti-sense AluJo_dup76732|chr22:19948373-19948668:+|1.1280731086370028|0.0736874643840056|3.94|151.0|17|2|anti-sense MSMS UPN47_class_I_Rep_3 4 637.803955078125 2 637.802965 1273.59138 NaN NaN NaN NaN NaN NaN NaN 65.7 1 68.88 68.38 69.38 3.1795 0 0 0 0.53105 1 15796 15796 1.6526 0 1 3836 129 2433 2436 4819 4819 -0.03447426997126968 DNDDSGEEMV 10 Unmodified _DNDDSGEEMV_ 0 0 0 REV__ENSG00000184304|ENST00000331968|PRKD1 REV__ENSG00000184304|ENST00000331968|PRKD1 MSMS UPN47_class_I_Rep_2 3 555.6962280273438 2 555.698226 1109.3819 NaN NaN NaN NaN NaN NaN NaN 114.17 1 117.68 117.18 118.18 3.5109 0 0 0 0.53105 1 27794 27794 1.6526 0.32309 1 + 3837 20813 2434 2437 4820 4820 -0.16841759531575917 DNDECADEEP 10 Unmodified _DNDECADEEP_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENSG00000090006.18,LTBP4,chr19,+,I33.1,40626010,40626974|44|9.3|4|intron;ENSG00000090006.18,LTBP4,chr19,+,I33.1,40626010,40626974|44|9.3|3|intron;ENST00000318809.11_1_19:41120174-41135452:+|nuORF;ENSG00000090006.18,LTBP4,chr19,+,I33.1,40626010,40626974|44|9.3|2|intron;nc|ENSG00000090006|Q8N2S1-4|LTBP4;ENST00000595118.5_1_19:41119631-41135452:+|nuORF;ENSG00000090006|ENST00000396819|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN47_class_I_Rep_2 3 568.68798828125 2 568.687858 1135.36116 NaN NaN NaN NaN NaN NaN NaN 116.65 1 120.14 119.64 120.64 3.4891 0 0 0 0.53105 1 28485 28485 1.6526 1.0511 1 3838 16642 2435 2438 4821 4821 -0.20110349911260528 DNEDEQIELT 10 Unmodified _DNEDEQIELT_ 0 0 0 REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF MSMS UPN48_class_I_Rep_1 5 603.2201538085938 2 603.262047 1204.50954 NaN NaN NaN NaN NaN NaN NaN 118.41 1 122.03 121.53 122.53 3.6189 0 0 0 0.53105 1 28881 28881 1.4819 0 1 + 3839 17854 2436 2439 4822 4822 -0.08453295665913174 DNEEILRNCHN 11 Unmodified _DNEEILRNCHN_ 0 0 0 REV__ENSG00000164304|ENST00000502583|CAGE1 REV__ENSG00000164304|ENST00000502583|CAGE1 MSMS UPN48_class_I_Rep_1 5 452.88006591796875 3 452.870214 1355.58881 NaN NaN NaN NaN NaN NaN NaN 86.296 1 89.909 89.409 90.409 3.613 0 0 0 0.38417 1 20674 20674 0.40827 0 1 + 3840 20051 2437 2440 4823 4823 -0.0747592719271779 DNELKSHLQS 10 Unmodified _DNELKSHLQS_ 0 0 0 REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A MSMS UPN47_class_I_Rep_1 2 585.76904296875 2 585.791109 1169.56767 NaN NaN NaN NaN NaN NaN NaN 53.387 1 56.915 56.415 57.415 3.5278 0 0 0 0.53105 1 11957 11957 4.897 0.95262 1 + 3841 19218 2438 2441 4824 4824 -0.01033569229934983 DNENHPEVACK 11 Unmodified _DNENHPEVACK_ 0 0 0 REV__L1MC3_dup3462|chr4:173404868-173406926:-|1.884988129433001|0.0593003682928886|4.99|150.0|39|2|sense REV__L1MC3_dup3462|chr4:173404868-173406926:-|1.884988129433001|0.0593003682928886|4.99|150.0|39|2|sense MSMS UPN48_class_I_Rep_1 5 628.2705688476562 2 628.272226 1254.5299 NaN NaN NaN NaN NaN NaN NaN 56.241 1 59.742 59.242 60.242 3.5014 0 0 0 0.38417 1 12082 12082 2.086 0.24177 1 + 3842 26736 2439 2442 4825 4825 -0.08718403487091564 DNENVVYNGIL 11 Unmodified _DNENVVYNGIL_ 0 0 0 L1MB1_dup2670|chr7:156880953-156882160:+|1.6613491765845303|0.0207710173777193|6.32|150.0|14|1|sense L1MB1_dup2670|chr7:156880953-156882160:+|1.6613491765845303|0.0207710173777193|6.32|150.0|14|1|sense L1MB1_dup2670|chr7:156880953-156882160:+|1.6613491765845303|0.0207710173777193|6.32|150.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 625.3076171875 2 625.306592 1248.59863 NaN NaN NaN NaN NaN NaN NaN 43.293 1 43.293 42.793 43.793 0 0 0 0 0.38417 1 8633 8633 1.1933 0.23107 1 3843 10174 2440 2443 4826 4826 -0.015724159157116446 DNESFRNIANL 11 Unmodified _DNESFRNIANL_ 0 0 0 REV__MER6A_dup358|chr5:61341001-61341583:+|1.166186917948392|0.051254557236695|4.51|151.0|35|3|anti-sense REV__MER6A_dup358|chr5:61341001-61341583:+|1.166186917948392|0.051254557236695|4.51|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 646.8153076171875 2 646.815116 1291.61568 0.48645 0.00031464 -0.68896 -0.00044563 -0.20251 -0.00013099 646.8148075973767 77.892 0.36253 81.321 81.155 81.518 3.4289 60 35 3 0 0 0 0.56174 1 19328 19328 6.1918 0.46 1 223840 + 3844 31547 2441 2444 4827 4827 -0.01846495309882812 DNESFRNIANL 11 Unmodified _DNESFRNIANL_ 0 0 0 REV__MER6A_dup358|chr5:61341001-61341583:+|1.166186917948392|0.051254557236695|4.51|151.0|35|3|anti-sense REV__MER6A_dup358|chr5:61341001-61341583:+|1.166186917948392|0.051254557236695|4.51|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 647.3153686523438 2 646.815116 1291.61568 0.47565 0.00030766 -0.74713 -0.00048325 -0.27148 -0.0001756 646.8145930149764 78.138 0.52583 81.419 81.205 81.731 3.2816 95 54 2 0 0 0 0.64297 1 19520 19520 3.8763 0.59502 1 127750 + 3845 31547 2441 2444 4828 4828 -0.01846495309882812 DNEYIHHP 8 Unmodified _DNEYIHHP_ 0 0 0 L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|99|3|anti-sense L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|99|3|anti-sense L1ME1_dup11437|chr6:38461160-38462794:-|2.6738640756940435|0.0514721542256223|5.7|151.0|99|3|anti-sense MSMS UPN47_class_I_Rep_3 4 512.269775390625 2 512.727781 1023.44101 NaN NaN NaN NaN NaN NaN NaN 45.26 1 48.504 48.004 49.004 3.2441 0 0 0 0.40738 1 9572 9572 0.79363 0 1 3846 12182 2442 2445 4829 4829 -0.06977450664430762 DNFEFDDSH 9 Unmodified _DNFEFDDSH_ 0 0 0 REV__ENSG00000108797.12,CNTNAP1,chr17,+,I18.1,42693537,42695520|35|4.2|8|intron REV__ENSG00000108797.12,CNTNAP1,chr17,+,I18.1,42693537,42695520|35|4.2|8|intron MSMS UPN46_class_I_Rep_3 1 563.2246704101562 2 563.209618 1124.40468 NaN NaN NaN NaN NaN NaN NaN 70.101 1 70.101 69.601 70.601 0 0 0 0 0.38639 1 16094 16094 3.9444 0.3479 1 + 3847 18392 2443 2446 4830 4830 -0.1525437235179652 DNFYDEVTV 9 Unmodified _DNFYDEVTV_ 0 0 0 REV__ENST00000511015.1_1_5:462030-464560:+|nuORF REV__ENST00000511015.1_1_5:462030-464560:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 551.2403564453125 2 551.240386 1100.46622 0.45893 0.00025298 -0.60995 -0.00033623 -0.15102 -8.3247E-05 551.2402819037042 76.721 0.58456 80.053 79.783 80.368 3.3315 124 60 3 0 0 0 0.43982 1 18956 18956 5.7319 5.7319 1 233010 + 3848 20695 2444 2447 4831 4831 -0.07999440652542944 DNFYDEVTV 9 Unmodified _DNFYDEVTV_ 0 0 0 REV__ENST00000511015.1_1_5:462030-464560:+|nuORF REV__ENST00000511015.1_1_5:462030-464560:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7484741210938 2 551.240386 1100.46622 0.45893 0.00025298 -0.60995 -0.00033623 -0.15102 -8.3247E-05 551.2402819037042 76.721 0.58456 80.053 79.783 80.368 3.3315 124 60 3 0 0 0 0.12354 1 19067 19067 3.5965 3.5965 1 233010 + 3849 20695 2444 2447 4832 4832 -0.07999440652542944 DNHQDWEAKL 10 Unmodified _DNHQDWEAKL_ 0 0 0 REV__ENSG00000172361|ENST00000398545|CFAP53 REV__ENSG00000172361|ENST00000398545|CFAP53 MULTI-MSMS UPN47_class_I_Rep_2 3 628.2864379882812 2 628.288734 1254.56291 0.50801 0.00031917 2.1405 0.0013449 2.6485 0.0016641 628.7928065496886 51.671 0.44994 55.004 54.663 55.113 3.3332 47 21 3 0 0 0 0.56118 1 11470 11470 2.9952 0.26005 1 75576 + 3850 20446 2445 2448 4833 4833 -0.05418453372726617 DNIEAVGKKL 10 Unmodified _DNIEAVGKKL_ 0 0 0 ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENST00000520550.1_1_5:67588878-67591317:+|nuORF ENST00000520550.1_1_5:67588878-67591317:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 543.8115844726562 2 543.811313 1085.60807 0.01113 6.0528E-06 -0.018778 -1.0211E-05 -0.0076473 -4.1587E-06 543.8112167339688 37.553 0.45539 40.952 40.759 41.214 3.3988 60 34 2 0 0 0 0.56118 1 7135 7135 2.9952 0.26005 1 74486 3851 3405 2446 2449 4834 4834 0.06869397160471635 DNIEKLKKL 9 Unmodified _DNIEKLKKL_ 0 0 0 REV__L1MC4_dup3459|chr2:177471574-177473237:-|1.0465275691990192|0.077950981915317|3.75|151.0|60|3|sense REV__L1MC4_dup3459|chr2:177471574-177473237:-|1.0465275691990192|0.077950981915317|3.75|151.0|60|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.83740234375 2 550.837331 1099.66011 -0.33701 -0.00018564 0.082112 4.523E-05 -0.2549 -0.00014041 550.8374097716161 20.403 0.71572 23.752 23.447 24.163 3.3496 102 61 2 0 0 0 0.43153 1 2056 2056 6.2058 2.2614 1 76670 + 3852 26906 2447 2450 4835 4835 0.11426560574250288 DNIVFLMF 8 Unmodified _DNIVFLMF_ 0 0 0 HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|40|1|anti-sense HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|40|1|anti-sense HAL1_dup6629|chr4:139882872-139883815:+|4.501289423711658|0.0461790961977648|6.61|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.7471008300781 2 499.754421 997.494289 NaN NaN NaN NaN NaN NaN NaN 119.16 1 122.76 122.26 123.26 3.6036 0 0 0 0.40738 1 29598 29598 0.79363 0 1 3853 7907 2448 2451 4836 4836 -0.0045578920611433205 DNKFFSAF 8 Unmodified _DNKFFSAF_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|208|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|208|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|208|2|anti-sense MSMS UPN48_class_I_Rep_2 6 488.2320251464844 2 488.232168 974.449782 NaN NaN NaN NaN NaN NaN NaN 73.29 1 76.868 76.368 77.368 3.5779 0 0 0 0.39996 1 17203 17203 7.9102 0 1 3854 14844 2449 2452 4837 4837 -0.03846477027957462 DNKFFSAF 8 Unmodified _DNKFFSAF_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|208|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|208|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|208|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.791015625 2 488.232168 974.449782 0.28812 0.00014067 -0.020424 -9.9715E-06 0.2677 0.0001307 488.23208771628845 73.395 0.47085 76.932 76.71 77.181 3.5373 84 52 2 0 0 0 0.82752 2 17210 17210;17220 13.906 0 1 153800 3855 14844 2449 2452 4838;4839 4838 -0.03846477027957462 DNKVKPHLY 9 Unmodified _DNKVKPHLY_ 0 0 0 AluSx_dup37099|chr6:37851046-37851286:-|1.126432481626811|0.0108749997820999|6.69|151.0|9|3|sense AluSx_dup37099|chr6:37851046-37851286:-|1.126432481626811|0.0108749997820999|6.69|151.0|9|3|sense AluSx_dup37099|chr6:37851046-37851286:-|1.126432481626811|0.0108749997820999|6.69|151.0|9|3|sense MSMS UPN46_class_I_Rep_3 1 557.3132934570312 2 557.306198 1112.59784 NaN NaN NaN NaN NaN NaN NaN 53.048 1 53.048 52.548 53.548 0 0 0 0 0.39428 1 11385 11385 2.0598 0 1 3856 281 2450 2453 4840 4840 0.04604834225892773 DNNRIRKI 8 Unmodified _DNNRIRKI_ 0 0 0 ENSG00000188783|ENST00000343110|PRELP ENSG00000188783|ENST00000343110|PRELP ENSG00000188783|ENST00000343110|PRELP MSMS UPN47_class_I_Rep_2 3 514.7997436523438 2 514.801614 1027.58868 NaN NaN NaN NaN NaN NaN NaN 39.82 1 43.191 42.691 43.691 3.3712 0 0 0 0.40625 1 7863 7863 2.3027 0.4585 1 3857 5252 2451 2454 4841 4841 0.0759848566024175 DNPPVFRER 9 Unmodified _DNPPVFRER_ 0 0 0 nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12 nc|ENSG00000251664|Q9UN75-2|PCDHA12 nc|ENSG00000251664|Q9UN75-2|PCDHA12 MULTI-MSMS UPN47_class_I_Rep_1 2 565.2911376953125 2 565.291079 1128.56761 -0.061104 -3.4541E-05 0.14281 8.0732E-05 0.081711 4.619E-05 565.2911855454054 31.778 0.66621 35.507 35.187 35.854 3.7293 110 51 3 0 0 0 0.39745 2 5402 5402;5486 8.1555 0 1 163010 3858 5745 2452 2455 4842;4843 4842 0.008464755607064944 DNPPVFRER 9 Unmodified _DNPPVFRER_ 0 0 0 nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12 nc|ENSG00000251664|Q9UN75-2|PCDHA12 nc|ENSG00000251664|Q9UN75-2|PCDHA12 MULTI-MSMS UPN47_class_I_Rep_2 3 565.2928466796875 2 565.291079 1128.56761 0.046152 2.6089E-05 0.13095 7.4026E-05 0.1771 0.00010012 565.2910782885267 32.085 0.9535 35.554 35.158 36.111 3.4691 113 68 2 0 0 0 0.49187 1 5434 5434 1.4819 0 1 131330 3859 5745 2452 2455 4844 4844 0.008464755607064944 DNPPVFRER 9 Unmodified _DNPPVFRER_ 0 0 0 nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12 nc|ENSG00000251664|Q9UN75-2|PCDHA12 nc|ENSG00000251664|Q9UN75-2|PCDHA12 MULTI-MSMS UPN47_class_I_Rep_3 4 565.7926635742188 2 565.291079 1128.56761 -0.14914 -8.431E-05 0.36773 0.00020787 0.21858 0.00012356 565.2912264028799 32.39 1.0096 35.676 35.306 36.315 3.2867 129 77 2 0 0 0 0.39745 3 5579 5564;5579;5645 8.1555 0 1 139680 3860 5745 2452 2455 4845;4846;4847 4846 0.008464755607064944 DNPTKGLRV 9 Unmodified _DNPTKGLRV_ 0 0 0 HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.2826843261719 2 500.282723 998.550893 -0.32661 -0.0001634 -0.037334 -1.8677E-05 -0.36395 -0.00018208 500.282687481456 13.373 0.19246 16.83 16.764 16.956 3.457 35 21 2 0 0 0 0.49026 1 320 320 1.6526 0 1 42554 3861 8092 2453 2456 4848 4848 0.051559746747557256 DNPTKGLRV 9 Unmodified _DNPTKGLRV_ 0 0 0 HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 500.282723 998.550893 -0.17626 -8.8181E-05 -0.37487 -0.00018754 -0.55113 -0.00027572 500.28248284715795 13.448 0.17754 16.836 16.781 16.958 3.388 -0.011361 -0.00029308 NaN 1.6526 37 22 2 NaN NaN NaN NaN 0 NaN NaN 0 33734 3862 8092 2453 2456 0.051559746747557256 DNPTKGLRV 9 Unmodified _DNPTKGLRV_ 0 0 0 HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|70|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 500.282723 998.550893 -0.64647 -0.00032342 0.14946 7.477E-05 -0.49702 -0.00024865 500.28288666322334 13.502 0.18669 16.876 16.756 16.943 3.3734 0.028628 0.00023153 NaN 1.6526 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 31392 3863 8092 2453 2456 0.051559746747557256 DNQPKDLI 8 Unmodified _DNQPKDLI_ 0 0 0 nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5 nc|ENSG00000155052|Q8WYK1|CNTNAP5 nc|ENSG00000155052|Q8WYK1|CNTNAP5 MSMS UPN48_class_I_Rep_1 5 471.749755859375 2 471.748182 941.481811 NaN NaN NaN NaN NaN NaN NaN 81.891 1 85.467 84.967 85.967 3.5753 0 0 0 0.40404 1 19541 19541 5.2307 2.6532 1 3864 3690 2454 2457 4849 4849 0.008728906551823457 DNQYWYWE 8 Unmodified _DNQYWYWE_ 0 0 0 REV__L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|163|3|sense REV__L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|163|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 602.239990234375 2 602.240721 1202.46689 0.04831 2.9094E-05 -1.022 -0.00061552 -0.97374 -0.00058643 602.2401498511136 13.772 0.18461 17.159 17.083 17.268 3.3871 26 21 2 0 0 0 0.82752 1 397 397 0.6015 0.076735 1 23788 + 3865 30130 2455 2458 4850 4850 -0.12624601212814923 DNRKMCLF 8 Unmodified _DNRKMCLF_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|24|1|sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|24|1|sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|24|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 513.8065185546875 2 513.746605 1025.47866 0.33662 0.00017294 -0.28672 -0.0001473 0.049893 2.5632E-05 513.7481420250392 118.34 0.055 121.76 121.73 121.79 3.4238 6 4 2 0 0 0 0.72333 1 29181 29181 0.79363 0 1 10390 3866 7992 2456 2459 4851 4851 -0.03306398994823212 DNRKRALYY 9 Unmodified _DNRKRALYY_ 0 0 0 REV__L1MB8_dup12001|chr12:117015672-117017042:-|2.320554831928066|0.2233954971622385|3.38|151.0|32|2|sense REV__L1MB8_dup12001|chr12:117015672-117017042:-|2.320554831928066|0.2233954971622385|3.38|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 599.818359375 2 599.820004 1197.62546 NaN NaN NaN NaN NaN NaN NaN 51.687 1 55.28 54.78 55.78 3.5932 0 0 0 0.39518 1 11443 11443 1.8442 0.88196 1 + 3867 26350 2457 2460 4852 4852 0.03454737486140402 DNRRWLQP 8 Unmodified _DNRRWLQP_ 0 0 0 chr2:200732539-200738660|88|14.72|0.1|7.21|+|1|AOX3P-AOX2P,AOX3P-AOX2P|1 chr2:200732539-200738660|88|14.72|0.1|7.21|+|1|AOX3P-AOX2P,AOX3P-AOX2P|1 chr2:200732539-200738660|88|14.72|0.1|7.21|+|1|AOX3P-AOX2P,AOX3P-AOX2P|1 MSMS UPN48_class_I_Rep_2 6 542.7850952148438 2 542.785964 1083.55738 NaN NaN NaN NaN NaN NaN NaN 31.618 1 35.259 34.759 35.759 3.641 0 0 0 0.4044 1 4779 4779 4.756 0.81161 1 3868 598 2458 2461 4853 4853 0.018939126261329875 DNRRWLQP 8 Unmodified _DNRRWLQP_ 0 0 0 chr2:200732539-200738660|88|14.72|0.1|7.21|+|1|AOX3P-AOX2P,AOX3P-AOX2P|1 chr2:200732539-200738660|88|14.72|0.1|7.21|+|1|AOX3P-AOX2P,AOX3P-AOX2P|1 chr2:200732539-200738660|88|14.72|0.1|7.21|+|1|AOX3P-AOX2P,AOX3P-AOX2P|1 MSMS UPN48_class_I_Rep_3 7 542.7876586914062 2 542.785964 1083.55738 NaN NaN NaN NaN NaN NaN NaN 31.374 1 35.076 34.576 35.576 3.7015 0 0 0 0.40625 1 4636 4636 2.3027 0.24298 1 3869 598 2458 2461 4854 4854 0.018939126261329875 DNRSIEPLTY 10 Unmodified _DNRSIEPLTY_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS UPN48_class_I_Rep_2 6 604.3035888671875 2 604.30131 1206.58807 NaN NaN NaN NaN NaN NaN NaN 58.701 1 62.199 61.699 62.699 3.4987 0 0 0 0.53105 1 12809 12809 4.5289 0.58447 1 3870 2005 2459 2462 4855 4855 -0.006963985701531783 DNTTKILVK 9 Unmodified _DNTTKILVK_ 0 0 0 ENSG00000075407.18,ZNF37A,chr10,+,I5.1,38096633,38114754|33|6.19|1|intron ENSG00000075407.18,ZNF37A,chr10,+,I5.1,38096633,38114754|33|6.19|1|intron ENSG00000075407.18,ZNF37A,chr10,+,I5.1,38096633,38114754|33|6.19|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 516.30810546875 2 516.308406 1030.60226 -0.31432 -0.00016229 0.24804 0.00012807 -0.066284 -3.4223E-05 516.3085894266733 40.088 0.62301 43.459 43.235 43.858 3.3712 67 41 2 0 0 0 0.49187 1 7892 7892 1.4819 0 1 135580 3871 1144 2460 2463 4856 4856 0.0881829864881638 DNVQDISGVL 10 Unmodified _DNVQDISGVL_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS UPN48_class_I_Rep_3 7 530.2697143554688 2 530.269478 1058.5244 0.39886 0.0002115 2.5599 0.0013574 2.9588 0.0015689 530.2706191065098 36.014 0.16765 39.68 39.606 39.774 3.6668 22 15 2 0 0 0 0.55949 1 5920 5920 4.1895 0 1 70260 3872 2934 2461 2464 4857 4857 -0.0025175900723297673 DPACLPLPPPP 11 Unmodified _DPACLPLPPPP_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS UPN48_class_I_Rep_1 5 558.79248046875 2 558.791535 1115.56852 0.54705 0.00030569 0.93619 0.00052313 1.4832 0.00082882 558.7921730355108 56.564 0.82693 60.066 59.631 60.458 3.5014 146 67 3 0 0 0 0.31923 1 12160 12160 30.637 0.79596 1 409980 3873 4566 2462 2465 4858 4858 0.015355538854009865 DPAELVHNR 9 Unmodified _DPAELVHNR_ 0 0 0 REV__ENST00000477790.1_1_10:38385521-38404340:+|nuORF REV__ENST00000477790.1_1_10:38385521-38404340:+|nuORF MSMS UPN47_class_I_Rep_2 3 525.7720336914062 2 525.76998 1049.52541 NaN NaN NaN NaN NaN NaN NaN 59.152 1 62.434 61.934 62.934 3.2818 0 0 0 0.39428 1 13747 13747 2.0598 0.21551 1 + 3874 22546 2463 2466 4859 4859 0.0026250015232562873 DPAGALQAAFR 11 Unmodified _DPAGALQAAFR_ 0 0 0 nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000476333.1_1_6:33280961-33281729:-|nuORF;ENST00000480730.5_1_6:33272736-33281818:-|nuORF nc|ENSG00000231925|O15533-2|TAPBP nc|ENSG00000231925|O15533-2|TAPBP MULTI-MSMS UPN48_class_I_Rep_2 6 558.7930297851562 2 558.793455 1115.57236 0.60821 0.00033987 -1.9455 -0.0010871 -1.3373 -0.00074725 558.7921458187539 56.572 0.7657 60.105 59.684 60.45 3.5333 98 66 2 0 0 0 8.7656E-15 7 12145 12090;12107;12133;12145;12183;12209;12225 121.93 75.909 1 314060 3875 5680 2464 2467 4860;4861;4862;4863;4864;4865;4866 4863 0.01919359703470036 DPAGALQAAFR 11 Unmodified _DPAGALQAAFR_ 0 0 0 nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000476333.1_1_6:33280961-33281729:-|nuORF;ENST00000480730.5_1_6:33272736-33281818:-|nuORF nc|ENSG00000231925|O15533-2|TAPBP nc|ENSG00000231925|O15533-2|TAPBP MULTI-MSMS UPN48_class_I_Rep_3 7 558.7933959960938 2 558.793455 1115.57236 0.31489 0.00017596 -2.3456 -0.0013107 -2.0308 -0.0011348 558.7922655425092 56.446 0.82116 59.989 59.511 60.332 3.5427 121 75 3 0 0 0 0.00027421 5 12053 12006;12015;12053;12091;12128 93.448 53.053 1 349460 3876 5680 2464 2467 4867;4868;4869;4870;4871 4869 0.01919359703470036 DPCCQGLVL 9 Unmodified _DPCCQGLVL_ 0 0 0 L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|78|3|anti-sense;L1MB7_dup19967|chr17:46318116-46319212:-|6.770367719582384|0.3594579923776495|4.24|151.0|72|3|anti-sense;L1MB7_dup19949|chr17:45527126-45528294:+|1.3751843417128908|0.0710448626903553|4.27|151.0|79|3|anti-sense L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|78|3|anti-sense L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|78|3|anti-sense MSMS UPN47_class_I_Rep_2 3 474.21795654296875 2 474.219888 946.425224 NaN NaN NaN NaN NaN NaN NaN 73.793 1 77.098 76.598 77.598 3.3048 0 0 0 0.4007 1 18163 18163 0.52476 0.52476 1 3877 10779 2465 2468 4872 4872 -0.050131964973388676 DPCLCYCECCC 11 Unmodified _DPCLCYCECCC_ 0 0 0 L1PA16_dup13210|chr19:6849613-6850078:-|2.448874511925705|0.2676204837106298|3.19|151.0|28|2|anti-sense L1PA16_dup13210|chr19:6849613-6850078:-|2.448874511925705|0.2676204837106298|3.19|151.0|28|2|anti-sense L1PA16_dup13210|chr19:6849613-6850078:-|2.448874511925705|0.2676204837106298|3.19|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_2 6 627.2395629882812 2 627.674958 1253.33536 NaN NaN NaN NaN NaN NaN NaN 115.83 1 119.49 118.99 119.99 3.6607 0 0 0 0.38417 1 27734 27734 0 0 1 3878 14048 2466 2469 4873 4873 -0.28117021546381693 DPCWSPPSP 9 Unmodified _DPCWSPPSP_ 0 0 0 REV__ENST00000554088.1_1_14:65182713-65194438:+|nuORF REV__ENST00000554088.1_1_14:65182713-65194438:+|nuORF MSMS UPN47_class_I_Rep_3 4 493.3421630859375 2 493.207835 984.401117 NaN NaN NaN NaN NaN NaN NaN 26.194 1 29.541 29.041 30.041 3.3478 0 0 0 0.39518 1 3795 3795 1.8442 1.0506 1 + 3879 22978 2467 2470 4874 4874 -0.09170713659364083 DPDAATFPVGD 11 Unmodified _DPDAATFPVGD_ 0 0 0 REV__nc|ENSG00000172239|Q9H074-3|PAIP1 REV__nc|ENSG00000172239|Q9H074-3|PAIP1 MSMS UPN47_class_I_Rep_3 4 552.74560546875 2 552.745836 1103.47712 NaN NaN NaN NaN NaN NaN NaN 115.19 1 118.67 118.17 119.17 3.4802 0 0 0 0.38417 1 28315 28315 2.9952 0.41776 1 + 3880 20440 2468 2471 4875 4875 -0.07048038278230706 DPDASWGCWR 10 Unmodified _DPDASWGCWR_ 0 0 0 ENST00000401869.5_1_2:242447465-242447588:-|nuORF;ENST00000403346.7_1_2:242447465-242448077:-|nuORF;ENST00000316586.8_1_2:242447465-242448045:-|nuORF ENST00000401869.5_1_2:242447465-242447588:-|nuORF ENST00000401869.5_1_2:242447465-242447588:-|nuORF MSMS UPN47_class_I_Rep_2 3 596.746337890625 2 596.745647 1191.47674 NaN NaN NaN NaN NaN NaN NaN 74.271 1 77.575 77.075 78.075 3.3048 0 0 0 0.53105 1 18296 18296 1.3295 0 1 3881 6136 2469 2472 4876 4876 -0.11133736479064282 DPDCPDDSDE 10 Unmodified _DPDCPDDSDE_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.A4192Gfs*13|1|0.08|ENSG00000168702|chr2:140322028-140322029|-/C|frameshift_variant;ENST00000486364.1_1_2:142563306-142567962:-|nuORF ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MSMS UPN48_class_I_Rep_2 6 554.1766967773438 2 554.174583 1106.33461 NaN NaN NaN NaN NaN NaN NaN 30.043 1 33.678 33.178 34.178 3.6351 0 0 0 0.53105 1 4342 4342 0.40072 0.40072 1 3882 4386 2470 2473 4877 4877 -0.21430038802577656 DPDMVDVFMDH 11 Unmodified _DPDMVDVFMDH_ 0 0 0 ENSG00000143631|ENST00000368799|FLG;CON__P20930 ENSG00000143631|ENST00000368799|FLG ENSG00000143631|ENST00000368799|FLG MULTI-MSMS UPN47_class_I_Rep_3 4 440.8458557128906 3 440.846018 1319.51622 -0.30126 -0.00013281 0.26215 0.00011557 -0.039108 -1.7241E-05 440.84605096188994 49.934 0.8338 53.16 52.916 53.75 3.2262 105 46 4 0 0 0 0.65674 1 10979 10979 2.6312 0.54523 1 204970 + 3883 638 2471 2474 4878 4878 -0.13075397310535664 DPFDCPKVQ 9 Unmodified _DPFDCPKVQ_ 0 0 0 REV__nc|ENSG00000116785|Q02985-2|CFHR3 REV__nc|ENSG00000116785|Q02985-2|CFHR3 MSMS UPN47_class_I_Rep_2 3 524.7421875 2 524.742042 1047.46953 NaN NaN NaN NaN NaN NaN NaN 16.553 1 19.939 19.439 20.439 3.3864 0 0 0 0.38916 1 1079 1079 3.2813 0.39209 1 + 3884 18614 2472 2475 4879 4879 -0.052304690795153874 DPFLKPYIK 9 Unmodified _DPFLKPYIK_ 0 0 0 L1PA8_dup5868|chr11:83200984-83202586:-|1.0753577814096096|0.1622837653160103|2.73|151.0|27|2|sense L1PA8_dup5868|chr11:83200984-83202586:-|1.0753577814096096|0.1622837653160103|2.73|151.0|27|2|sense L1PA8_dup5868|chr11:83200984-83202586:-|1.0753577814096096|0.1622837653160103|2.73|151.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.8241577148438 2 560.823692 1119.63283 0.047816 2.6816E-05 -0.73834 -0.00041408 -0.69052 -0.00038726 560.8232428038832 19.123 1.0067 22.513 21.997 23.004 3.3898 189 105 2 0 0 0 0.50088 2 1635 1635;1855 0.52476 0 1 99939 3885 14953 2473 2476 4880;4881 4880 0.07780077033817179 DPFYGPWYR 9 Unmodified _DPFYGPWYR_ 0 0 0 nc|ENSG00000157600|Q5U3C3-2|TMEM164;ENSG00000157600|ENST00000372068|TMEM164 nc|ENSG00000157600|Q5U3C3-2|TMEM164 nc|ENSG00000157600|Q5U3C3-2|TMEM164 MULTI-MSMS UPN48_class_I_Rep_1 5 600.7776489257812 2 600.777274 1199.53999 0.53424 0.00032096 0.46389 0.00027869 0.99813 0.00059966 600.7775408873829 64.202 0.27817 67.66 67.518 67.797 3.4578 26 20 2 0 0 0 0.30034 1 14487 14487 13.906 7.1829 1 98632 3886 3770 2474 2477 4882 4882 -0.05179427699545158 DPFYGPWYR 9 Unmodified _DPFYGPWYR_ 0 0 0 nc|ENSG00000157600|Q5U3C3-2|TMEM164;ENSG00000157600|ENST00000372068|TMEM164 nc|ENSG00000157600|Q5U3C3-2|TMEM164 nc|ENSG00000157600|Q5U3C3-2|TMEM164 MSMS UPN48_class_I_Rep_3 7 600.7775268554688 2 600.777274 1199.53999 NaN NaN NaN NaN NaN NaN NaN 63.917 1 67.425 66.925 67.925 3.5083 0 0 0 0.37476 1 14329 14329 6.7232 0 1 3887 3770 2474 2477 4883 4883 -0.05179427699545158 DPGLNKQIYSR 11 Unmodified _DPGLNKQIYSR_ 0 0 0 REV__L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|98|2|anti-sense REV__L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|98|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 645.8438110351562 2 645.843676 1289.6728 0.50784 0.00032798 0.0073142 4.7239E-06 0.51515 0.00033271 645.8436171820971 53.031 0.7701 56.614 56.199 56.969 3.5836 107 48 3 0 0 0 0.64617 1 11059 11059 3.5871 0.59182 1 603760 + 3888 25141 2475 2478 4884 4884 0.03954971966481935 DPGWQIQLV 9 Unmodified _DPGWQIQLV_ 0 0 0 REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF MSMS UPN47_class_I_Rep_3 4 528.294921875 2 528.279649 1054.54475 NaN NaN NaN NaN NaN NaN NaN 31.694 1 34.993 34.493 35.493 3.2991 0 0 0 0.39518 1 5434 5434 1.8442 0.51471 1 + 3889 22955 2476 2479 4885 4885 0.0196545644323578 DPHRKDGSGGV 11 Unmodified _DPHRKDGSGGV_ 0 0 0 REV__L1M4_dup5923|chr5:131668973-131670173:+|1.3627411743132487|0.0501179866177172|4.77|151.0|30|2|sense REV__L1M4_dup5923|chr5:131668973-131670173:+|1.3627411743132487|0.0501179866177172|4.77|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 563.2455444335938 2 562.775793 1123.53703 NaN NaN NaN NaN NaN NaN NaN 44.618 1 47.974 47.474 48.474 3.3556 0 0 0 0.38417 1 9322 9322 0.96228 0.2719 1 + 3890 24438 2477 2480 4886 4886 -0.01979302824338447 DPIHKFRG 8 Unmodified _DPIHKFRG_ 0 0 0 LTR45C_dup147|chr7:32512699-32513195:+|1.589954832730475|0.0476211468069042|5.06|151.0|33|3|anti-sense LTR45C_dup147|chr7:32512699-32513195:+|1.589954832730475|0.0476211468069042|5.06|151.0|33|3|anti-sense LTR45C_dup147|chr7:32512699-32513195:+|1.589954832730475|0.0476211468069042|5.06|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 485.2661437988281 2 485.266876 968.519199 NaN NaN NaN NaN NaN NaN NaN 66.988 1 66.988 66.488 67.488 0 0 0 0 0.40625 1 15228 15228 2.3027 0.24298 1 3891 15645 2478 2481 4887 4887 0.03368026711473249 DPKHKINI 8 Unmodified _DPKHKINI_ 0 0 0 L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|10|1|sense L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|10|1|sense L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.78192138671875 2 482.782359 963.550165 -0.36625 -0.00017682 -0.49105 -0.00023707 -0.8573 -0.00041389 482.78206355858475 16.165 0.5245 19.678 19.49 20.014 3.5132 115 63 2 0 0 0 0.82752 1 1018 1018 0.69038 0 1 83472 3892 11386 2479 2482 4888 4888 0.06693180025683887 DPKHKINI 8 Unmodified _DPKHKINI_ 0 0 0 L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|10|1|sense L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|10|1|sense L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.7812805175781 2 482.782359 963.550165 -0.71948 -0.00034735 -0.3355 -0.00016197 -1.055 -0.00050932 482.78208462072797 16.542 0.60851 19.904 19.643 20.251 3.3619 120 69 2 0 0 0 0.82752 2 1014 1014;1107 0.69038 0 1 42055 3893 11386 2479 2482 4889;4890 4889 0.06693180025683887 DPKKHFPKDVR 11 Unmodified _DPKKHFPKDVR_ 0 0 0 L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|16|2|sense L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|16|2|sense L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 456.65740966796875 3 456.257849 1365.75172 NaN NaN NaN NaN NaN NaN NaN 86.023 1 86.023 85.523 86.523 0 0 0 0 0.38417 1 20553 20553 0.40827 0.24894 1 3894 11119 2480 2483 4891 4891 0.0834724399139759 DPKKHNLL 8 Unmodified _DPKKHNLL_ 0 0 0 ENST00000496281.1_1_20:62323608-62327208:+|nuORF;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1 ENST00000496281.1_1_20:62323608-62327208:+|nuORF ENST00000496281.1_1_20:62323608-62327208:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 482.7815856933594 2 482.782359 963.550165 -0.71948 -0.00034735 -0.3355 -0.00016197 -1.055 -0.00050932 482.78208462072797 16.542 0.60851 19.904 19.643 20.251 3.3619 120 69 2 0 0 0 0.82752 1 1074 1074 2.3027 1.6124 1 42055 3895 7098 2481 2484 4892 4892 0.06693180025706624 DPKKLFVG 8 Unmodified _DPKKLFVG_ 0 0 0 REV__ENSG00000086967|ENST00000357701|MYBPC2 REV__ENSG00000086967|ENST00000357701|MYBPC2 MSMS UPN46_class_I_Rep_3 1 452.26910400390625 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 38.435 1 38.435 37.935 38.935 0 0 0 0 0.40643 1 7317 7317 2.0598 0.21551 1 + 3896 17972 2482 2485 4893 4893 0.06739276765472368 DPKLNLRLF 9 Unmodified _DPKLNLRLF_ 0 0 0 REV__ENSG00000143515|ENST00000368489|ATP8B2 REV__ENSG00000143515|ENST00000368489|ATP8B2 MSMS UPN47_class_I_Rep_3 4 558.3311157226562 2 558.332216 1114.64988 NaN NaN NaN NaN NaN NaN NaN 54.373 1 57.559 57.059 58.059 3.1856 0 0 0 0.38784 1 12341 12341 3.5965 0 1 + 3897 19454 2483 2486 4894 4894 0.09713997639642002 DPKVCLVFFM 10 Unmodified _DPKVCLVFFM_ 0 0 0 REV__L1MC_dup7601|chr19:11863460-11863872:-|2.16441215122836|0.2749183756837439|2.98|149.0|32|3|anti-sense REV__L1MC_dup7601|chr19:11863460-11863872:-|2.16441215122836|0.2749183756837439|2.98|149.0|32|3|anti-sense MSMS UPN48_class_I_Rep_2 6 599.8010864257812 2 599.803588 1197.59262 NaN NaN NaN NaN NaN NaN NaN 48.347 1 52.084 51.584 52.584 3.7361 0 0 0 0.53105 1 9650 9650 1.3295 0.13619 1 + 3898 26478 2484 2487 4895 4895 0.0017307104740211798 DPLEGPGSQK 10 Unmodified _DPLEGPGSQK_ 0 0 0 REV__ENSG00000248383|ENST00000253807|PCDHAC1 REV__ENSG00000248383|ENST00000253807|PCDHAC1 MSMS UPN46_class_I_Rep_3 1 514.2545776367188 2 514.256371 1026.49819 NaN NaN NaN NaN NaN NaN NaN 102.94 1 102.94 102.44 103.44 0 0 0 0 0.53105 1 25120 25120 3.5965 0 1 + 3899 21346 2485 2488 4896 4896 -0.014000281787048152 DPLFGWLSDR 10 Unmodified _DPLFGWLSDR_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS UPN47_class_I_Rep_1 2 603.3010864257812 2 603.301113 1204.58767 -0.057614 -3.4759E-05 -0.20822 -0.00012562 -0.26583 -0.00016038 603.3009486168731 25.657 0.59046 29.419 29.132 29.723 3.7624 97 54 3 0 0 0 0.56354 1 3540 3540 1.3295 0 1 133250 3900 3065 2486 2489 4897 4897 -0.006437734993596678 DPLIALPYQA 10 Unmodified _DPLIALPYQA_ 0 0 0 REV__L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|56|2|anti-sense REV__L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.8023681640625 2 550.802957 1099.59136 0.035189 1.9382E-05 -0.20464 -0.00011272 -0.16945 -9.3336E-05 550.8027133842068 15.822 0.67654 19.209 19.037 19.714 3.3864 115 80 2 0 0 0 0.56333 1 886 886 1.4819 0.95714 1 49040 + 3901 29029 2487 2490 4898 4898 0.04554896274521525 DPLLMQYLG 9 Unmodified _DPLLMQYLG_ 0 0 0 REV__L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|298|2|anti-sense REV__L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|298|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.27099609375 2 525.270435 1048.52632 0.32134 0.00016879 3.0103 0.0015812 3.3316 0.00175 525.2702532556418 57.895 0.49028 61.332 61.154 61.645 3.437 34 28 2 0 0 0 0.41259 1 13398 13398 7.2892 0 1 63637 + 3902 29656 2488 2491 4899 4899 0.0039957847700407 DPLLSPESFYL 11 Unmodified _DPLLSPESFYL_ 0 0 0 REV__LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|47|3|anti-sense REV__LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_1 5 640.8223266601562 2 640.824086 1279.63362 NaN NaN NaN NaN NaN NaN NaN 49.917 1 53.441 52.941 53.941 3.5246 0 0 0 0.38417 1 10139 10139 2.9952 0.49676 1 + 3903 30862 2489 2492 4900 4900 0.0049882689224887145 DPLPPPTLCP 10 Unmodified _DPLPPPTLCP_ 0 0 0 L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|31|1|anti-sense;L1PA12_dup358|chr3:33541336-33542116:-|1.1576492095995667|0.0685950563324511|4.08|151.0|32|1|anti-sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|31|1|anti-sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.270751953125 2 525.270435 1048.52632 NaN NaN NaN NaN NaN NaN NaN 58.921 1 62.087 61.587 62.587 3.1658 0 0 0 0.53105 1 13728 13728 18.146 1.0335 1 3904 13716 2490 2493 4901 4901 0.0039957847700407 DPLQRSFQGR 10 Unmodified _DPLQRSFQGR_ 0 0 0 L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|10|1|sense;L1PA6_dup3347|chr9:41258115-41264136:-|2.492461497170712|0.2942167730389589|3.08|150.0|10|1|sense L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|10|1|sense L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 401.8778381347656 3 401.879149 1202.61562 NaN NaN NaN NaN NaN NaN NaN 21.148 1 21.148 20.648 21.648 0 0 0 0 0.53105 1 2315 2315 0.62683 0.21856 1 3905 14610 2491 2494 4902 4902 0.022415494807546565 DPLTKLVL 8 Unmodified _DPLTKLVL_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MSMS UPN47_class_I_Rep_3 4 450.2860107421875 2 449.784036 897.553519 -0.25432 -0.00011439 -0.22723 -0.00010221 -0.48155 -0.00021659 449.78372392621844 65.138 0.24587 68.317 68.177 68.423 3.1795 30 18 2 0 0 0 0.82752 1 15621 15621 26.268 3.5319 1 45321 3906 4236 2492 2495 4903 4903 0.10064430079705744 DPLTKLVL 8 Unmodified _DPLTKLVL_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 449.784036 897.553519 -0.22836 -0.00010271 -0.24458 -0.00011001 -0.47294 -0.00021272 449.7838142713492 65.101 0.35718 68.357 68.262 68.62 3.2556 0.019837 -6.1228E-06 NaN 26.268 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 56450 3907 4236 2492 2495 0.10064430079705744 DPMKARVVL 9 Oxidation (M) _DPM(Oxidation (M))KARVVL_ DPM(1)KARVVL DPM(56)KARVVL 0 0 1 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS UPN47_class_I_Rep_1 2 522.796875 2 522.797152 1043.57975 -0.14486 -7.5731E-05 -0.19356 -0.00010119 -0.33841 -0.00017692 522.7970023648014 29.311 1.2102 33.069 32.712 33.922 3.7578 213 94 3 0 0 0 0.033731 1 4619 4619 55.503 35.049 1 896440 3908 3321 2493 2496 4904 4904 103 0.05970375979518394 DPMKARVVL 9 Oxidation (M) _DPM(Oxidation (M))KARVVL_ DPM(1)KARVVL DPM(44)KARVVL 0 0 1 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS UPN47_class_I_Rep_2 3 522.796875 2 522.797152 1043.57975 -0.36601 -0.00019135 -0.094855 -4.959E-05 -0.46087 -0.00024094 522.7971045263621 29.519 1.4908 33.011 32.561 34.052 3.4923 279 122 4 0 0 0 0.062142 1 4691 4691 43.772 24.515 1 854130 3909 3321 2493 2496 4905 4905 103 0.05970375979518394 DPMKARVVL 9 Oxidation (M) _DPM(Oxidation (M))KARVVL_ DPM(1)KARVVL DPM(68)KARVVL 0 0 1 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS UPN47_class_I_Rep_3 4 522.7969360351562 2 522.797152 1043.57975 -0.30045 -0.00015708 -0.076584 -4.0038E-05 -0.37704 -0.00019711 522.7970564742997 29.74 1.3486 33.063 32.654 34.002 3.3235 269 113 3 0 0 0 0.013215 2 4847 4813;4847 67.838 38.757 1 906540 3910 3321 2493 2496 4906;4907 4907 103 0.05970375979518394 DPMKARVVL 9 Unmodified _DPMKARVVL_ 0 0 0 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS UPN47_class_I_Rep_1 2 514.79931640625 2 514.799694 1027.58484 -0.15295 -7.8738E-05 0.16295 8.3887E-05 0.010003 5.1496E-06 514.7997220277085 39.006 0.73764 42.671 42.382 43.119 3.6652 79 46 2 0 0 0 0.24936 5 7604 7525;7563;7604;7644;7672 17.113 7.039 1 155000 3911 3321 2493 2497 4908;4909;4910;4911;4912 4910 0.07214679842149962 DPMKARVVL 9 Unmodified _DPMKARVVL_ 0 0 0 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS UPN47_class_I_Rep_2 3 514.7996826171875 2 514.799694 1027.58484 -0.30148 -0.0001552 0.28796 0.00014824 -0.013519 -6.9596E-06 514.7998526211566 39.363 0.74624 42.741 42.447 43.194 3.3785 69 43 2 0 0 0 0.30034 4 7731 7662;7686;7731;7784 13.906 3.9444 1 157810 3912 3321 2493 2497 4913;4914;4915;4916 4915 0.07214679842149962 DPMKARVVL 9 Unmodified _DPMKARVVL_ 0 0 0 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS UPN47_class_I_Rep_3 4 514.7997436523438 2 514.799694 1027.58484 -0.20595 -0.00010602 0.10882 5.6018E-05 -0.097138 -5.0006E-05 514.7996322967737 39.514 0.75292 42.752 42.476 43.229 3.238 79 52 2 0 0 0 0.36392 3 7860 7775;7817;7860 10.074 5.7447 1 131910 3913 3321 2493 2497 4917;4918;4919 4919 0.07214679842149962 DPNEGAKLCR 10 Unmodified _DPNEGAKLCR_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MSMS UPN46_class_I_Rep_3 1 551.7683715820312 2 551.769123 1101.52369 NaN NaN NaN NaN NaN NaN NaN 27.254 1 27.254 26.754 27.754 0 0 0 0 0.53105 1 4021 4021 1.3295 0.36726 1 + 3914 20804 2494 2498 4920 4920 -0.023008769279385888 DPNKKMKRN 9 Unmodified _DPNKKMKRN_ 0 0 0 ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|2|intron;ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|5|intron;ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|6|intron;ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|1|intron;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP;ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|4|intron ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|2|intron ENSG00000165209.19,STRBP,chr9,-,I22.1,123125674,123128213|25|3.61|2|intron MSMS UPN47_class_I_Rep_3 4 565.80712890625 2 565.808582 1129.60261 NaN NaN NaN NaN NaN NaN NaN 27.616 1 30.959 30.459 31.459 3.3422 0 0 0 0.39518 1 4217 4217 1.8442 0.19162 1 3915 4166 2495 2499 4921 4921 0.042993950970185324 DPNNGLKIFS 10 Unmodified _DPNNGLKIFS_ 0 0 0 Tigger1_dup196|chr1:51375954-51376381:+|1.3086953845724325|0.0273707469700803|5.58|151.0|27|3|anti-sense Tigger1_dup196|chr1:51375954-51376381:+|1.3086953845724325|0.0273707469700803|5.58|151.0|27|3|anti-sense Tigger1_dup196|chr1:51375954-51376381:+|1.3086953845724325|0.0273707469700803|5.58|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_2 6 552.7871704101562 2 552.787838 1103.56112 NaN NaN NaN NaN NaN NaN NaN 57.158 1 60.673 60.173 61.173 3.5142 0 0 0 0.53105 1 12339 12339 4.897 1.3005 1 3916 33041 2496 2500 4922 4922 0.013485376093285595 DPPALTPKVL 10 Unmodified _DPPALTPKVL_ 0 0 0 AluSx_dup110083|chr20:3998799-3999108:+|1.7645510744084487|0.0145334237051662|6.92|151.0|12|1|anti-sense AluSx_dup110083|chr20:3998799-3999108:+|1.7645510744084487|0.0145334237051662|6.92|151.0|12|1|anti-sense AluSx_dup110083|chr20:3998799-3999108:+|1.7645510744084487|0.0145334237051662|6.92|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.8133544921875 2 525.813325 1049.6121 0.2161 0.00011363 -0.27005 -0.000142 -0.053949 -2.8367E-05 525.8132929953688 51.471 0.66644 55.065 54.779 55.445 3.5933 43 32 2 0 0 0 0.53004 1 11377 11377 8.1555 2.4237 1 67072 3917 272 2497 2501 4923 4923 0.08927486654192762 DPPAPLVPYVP 11 Unmodified _DPPAPLVPYVP_ 0 0 0 REV__HERV17-int_dup99|chr2:53758875-53760194:+|2.430999360242002|0.3146555266626559|2.95|151.0|47|1|anti-sense REV__HERV17-int_dup99|chr2:53758875-53760194:+|2.430999360242002|0.3146555266626559|2.95|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.8178100585938 2 582.818607 1163.62266 NaN NaN NaN NaN NaN NaN NaN 64.59 1 67.946 67.446 68.446 3.3557 0 0 0 0.38417 1 15354 15354 6.2058 0 1 + 3918 23573 2498 2502 4924 4924 0.047394693086062034 DPPARKEKTK 10 Unmodified _DPPARKEKTK_ 0 0 0 ENST00000497437.1_1_1:43279512-43282215:-|nuORF;ENSG00000177868|ENST00000372521|SVBP ENST00000497437.1_1_1:43279512-43282215:-|nuORF ENST00000497437.1_1_1:43279512-43282215:-|nuORF MSMS UPN48_class_I_Rep_3 7 585.3355102539062 2 585.335487 1168.65642 NaN NaN NaN NaN NaN NaN NaN 71.045 1 74.564 74.064 75.064 3.5185 0 0 0 0.53105 1 16470 16470 1.3295 0 1 3919 4806 2499 2503 4925 4925 0.07883890800371773 DPPLKFMSV 9 Oxidation (M) _DPPLKFM(Oxidation (M))SV_ DPPLKFM(1)SV DPPLKFM(51)SV 0 0 1 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_1 2 525.270263671875 2 525.270435 1048.52632 0.22174 0.00011647 -0.17006 -8.9325E-05 0.051687 2.7149E-05 525.2702436212222 51.706 0.70461 55.299 54.994 55.698 3.5932 83 41 3 0 0 0 0.04399 1 11452 11452 51.415 22.334 1 163790 3920 4439 2500 2504 4926 4926 142 0.0039957847700407 DPPLKFMSV 9 Oxidation (M) _DPPLKFM(Oxidation (M))SV_ DPPLKFM(1)SV DPPLKFM(50)SV 0 0 1 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_2 3 525.2705078125 2 525.270435 1048.52632 0.16405 8.617E-05 -0.26036 -0.00013676 -0.096311 -5.0589E-05 525.2701983342625 52.109 0.76144 55.442 54.935 55.696 3.3332 91 45 3 0 0 0 0.048729 2 11583 11537;11583 49.527 20.446 1 221830 3921 4439 2500 2504 4927;4928 4928 142 0.0039957847700407 DPPLKFMSV 9 Oxidation (M) _DPPLKFM(Oxidation (M))SV_ DPPLKFM(1)SV DPPLKFM(57)SV 0 0 1 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_3 4 525.2703247070312 2 525.270435 1048.52632 0.42514 0.00022332 -0.60819 -0.00031946 -0.18304 -9.6146E-05 525.2701452428365 52.159 0.68329 55.365 54.983 55.666 3.2055 81 43 3 0 0 0 0.029742 2 11679 11639;11679 57.249 26.613 1 214560 3922 4439 2500 2504 4929;4930 4930 142 0.0039957847700407 DPPQVRLFF 9 Unmodified _DPPQVRLFF_ 0 0 0 ENST00000590662.1_1_18:56246030-56247365:-|nuORF ENST00000590662.1_1_18:56246030-56247365:-|nuORF ENST00000590662.1_1_18:56246030-56247365:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 559.8026733398438 2 559.803291 1117.59203 0.50615 0.00028334 -0.73863 -0.00041349 -0.23248 -0.00013014 559.8027255677746 69.067 0.71287 72.522 72.072 72.785 3.4548 90 54 2 0 0 0 0.16559 2 15938 15938;16001 24.021 24.021 1 178640 3923 7615 2501 2505 4931;4932 4931 0.03793735714225477 DPPSPPLPMV 10 Unmodified _DPPSPPLPMV_ 0 0 0 HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|165|3|sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|165|3|sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|165|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.2703247070312 2 525.270435 1048.52632 0.33022 0.00017345 -0.0063976 -3.3605E-06 0.32382 0.00017009 525.2703320767129 58.673 0.61355 62.09 61.633 62.247 3.4171 64 40 2 0 0 0 0.46161 1 13532 13532 14.838 4.0143 1 71916 3924 8386 2502 2506 4933 4933 0.0039957847700407 DPQTKRKL 8 Unmodified _DPQTKRKL_ 0 0 0 nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-7|SEC31A MULTI-MSMS UPN47_class_I_Rep_1 2 493.2926330566406 2 493.293091 984.571629 -0.35472 -0.00017498 -0.41426 -0.00020435 -0.76897 -0.00037933 493.2927787210837 13.116 0.36355 16.573 16.509 16.872 3.457 53 38 2 0 0 0 0.82752 1 249 249 3.9444 1.6417 1 136370 3925 3103 2503 2507 4934 4934 0.07872565054424285 DPQTKRKL 8 Unmodified _DPQTKRKL_ 0 0 0 nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-7|SEC31A MULTI-MSMS UPN47_class_I_Rep_3 4 493.292724609375 2 493.293091 984.571629 -0.67259 -0.00033178 0.50247 0.00024787 -0.17012 -8.3918E-05 493.292924833093 13.192 0.32854 16.566 16.449 16.778 3.3734 69 36 3 0 0 0 0.82752 1 257 257 6.7232 0 1 93216 3926 3103 2503 2507 4935 4935 0.07872565054424285 DPRDFYNSY 9 Unmodified _DPRDFYNSY_ 0 0 0 ENSG00000163728|ENST00000296015|TTC14 ENSG00000163728|ENST00000296015|TTC14 ENSG00000163728|ENST00000296015|TTC14 MSMS UPN47_class_I_Rep_1 2 588.749755859375 2 588.751453 1175.48835 NaN NaN NaN NaN NaN NaN NaN 66.085 1 69.443 68.943 69.943 3.3576 0 0 0 0.38916 1 15807 15807 3.2813 1.4371 1 3927 4034 2504 2508 4936 4936 -0.09237216184101271 DPRVNDVIRM 10 Unmodified _DPRVNDVIRM_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MSMS UPN48_class_I_Rep_1 5 607.8014526367188 2 607.819147 1213.62374 NaN NaN NaN NaN NaN NaN NaN 42.805 1 46.313 45.813 46.813 3.5081 0 0 0 0.53105 1 7961 7961 13.906 3.8321 1 + 3928 19524 2505 2509 4937 4937 0.025473604058333876 DPRVNDVIRM 10 Unmodified _DPRVNDVIRM_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MSMS UPN48_class_I_Rep_1 5 607.801513671875 2 607.819147 1213.62374 NaN NaN NaN NaN NaN NaN NaN 43.194 1 46.704 46.204 47.204 3.5103 0 0 0 0.53105 1 8080 8080 5.7319 0.43497 1 + 3929 19524 2505 2509 4938 4938 0.025473604058333876 DPSRSCRVNP 10 Unmodified _DPSRSCRVNP_ 0 0 0 nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN nc|ENSG00000188157|O00468-2|AGRN nc|ENSG00000188157|O00468-2|AGRN MSMS UPN47_class_I_Rep_1 2 565.7727661132812 2 565.772197 1129.52984 NaN NaN NaN NaN NaN NaN NaN 41.607 1 45.286 44.786 45.786 3.6792 0 0 0 0.53105 1 8372 8372 1.3295 0.13619 1 3930 5219 2506 2510 4939 4939 -0.029743586964059432 DPSVLLSYHSS 11 Unmodified _DPSVLLSYHSS_ 0 0 0 REV__L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|50|1|anti-sense REV__L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|50|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 602.2957763671875 2 602.79586 1203.57717 0.60211 0.00036295 1.7095 0.0010305 2.3116 0.0013934 602.7968665485279 69.652 0.23299 73.165 73.007 73.24 3.5128 21 17 2 0 0 0 22.551 1 16070 16070 2.7352 0.89096 1 110340 + 3931 25960 2507 2511 4940 4940 -0.016478009444199415 DPSYDFPIIA 10 Unmodified _DPSYDFPIIA_ 0 0 0 L1ME3A_dup13685|chr17:20261773-20262589:-|1.1294905670796984|0.0273467821617104|5.37|151.0|34|1|anti-sense L1ME3A_dup13685|chr17:20261773-20262589:-|1.1294905670796984|0.0273467821617104|5.37|151.0|34|1|anti-sense L1ME3A_dup13685|chr17:20261773-20262589:-|1.1294905670796984|0.0273467821617104|5.37|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 569.3076171875 2 569.276772 1136.53899 NaN NaN NaN NaN NaN NaN NaN 53.326 1 56.854 56.354 57.354 3.5278 0 0 0 0.53105 1 11938 11938 1.4819 0 1 3932 12643 2508 2512 4941 4941 -0.023816868590984086 DPTNLDKF 8 Unmodified _DPTNLDKF_ 0 0 0 nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2;ENST00000417788.5_1_22:22024636-22041216:+|nuORF nc|ENSG00000100023|Q13356-2|PPIL2 nc|ENSG00000100023|Q13356-2|PPIL2 MULTI-SECPEP UPN47_class_I_Rep_2 3 474.779296875 2 475.234907 948.455261 0.19495 9.2648E-05 -0.42183 -0.00020047 -0.22687 -0.00010782 475.23461948536493 58.015 0.68851 61.307 61.008 61.696 3.2912 89 49 2 0 0 0 0.72333 1 13310 13310 2.3027 0.4585 1 226190 3933 1464 2509 2513 4942 4942 -0.021027982361488284 DPTRSCGPWYP 11 Unmodified _DPTRSCGPWYP_ 0 0 0 REV__AluSx4_dup4517|chr7:92712885-92713156:-|1.5120356705224467|0.0177524565669519|6.41|151.0|14|1|anti-sense REV__AluSx4_dup4517|chr7:92712885-92713156:-|1.5120356705224467|0.0177524565669519|6.41|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_2 3 639.7799682617188 2 639.78223 1277.54991 NaN NaN NaN NaN NaN NaN NaN 73.125 1 76.422 75.922 76.922 3.2971 0 0 0 0.38417 1 17962 17962 1.4819 0.28856 1 + 3934 17138 2510 2514 4943 4943 -0.07776607756454723 DPTRTFAWLP 10 Unmodified _DPTRTFAWLP_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MSMS UPN46_class_I_Rep_3 1 401.87811279296875 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 20.996 1 20.996 20.496 21.496 0 0 0 0 0.53105 1 2275 2275 1.9064 0 1 3935 5812 2511 2515 4944 4944 0.01520816880338316 DPTVPPLPF 9 Unmodified _DPTVPPLPF_ 0 0 0 ENST00000489366.2_1_1:46871719-46874871:+|nuORF;ENSG00000117480|ENST00000243167|FAAH ENST00000489366.2_1_1:46871719-46874871:+|nuORF ENST00000489366.2_1_1:46871719-46874871:+|nuORF MSMS UPN48_class_I_Rep_3 7 491.7643737792969 2 491.765843 981.517133 NaN NaN NaN NaN NaN NaN NaN 34.229 1 37.909 37.409 38.409 3.6797 0 0 0 0.39428 1 5415 5415 2.0598 0 1 3936 2219 2512 2516 4945 4945 0.025635531829948377 DPVIMIAAGY 10 Unmodified _DPVIMIAAGY_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|169|1|anti-sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|169|1|anti-sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|169|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 525.3029174804688 2 525.270435 1048.52632 0.33022 0.00017345 -0.0063976 -3.3605E-06 0.32382 0.00017009 525.2703320767129 58.673 0.61355 62.09 61.633 62.247 3.4171 64 40 2 0 0 0 0.84575 1 13431 13431 11.64 2.8949 1 71916 3937 15458 2513 2517 4946 4946 0.0039957847700407 DPVIMMFAGY 10 Unmodified _DPVIMMFAGY_ 0 0 0 L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|369|3|anti-sense;L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|278|2|anti-sense;L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|244|3|anti-sense;L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|213|1|anti-sense;L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|345|3|anti-sense;L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|227|2|anti-sense;L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|123|2|anti-sense;L1PA6_dup2435|chr6:75682406-75688529:-|8.3081442460004|0.2963414194894635|4.81|151.0|224|1|anti-sense;L1PA6_dup2007|chr5:78435234-78441339:-|3.071527030732481|0.1148923742763176|4.74|151.0|216|1|anti-sense;L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|307|3|anti-sense;L1PA6_dup4702|chr12:47674234-47679408:+|3.42160626153214|0.3741802570707959|3.19|150.0|302|3|anti-sense;L1PA6_dup3736|chrX:86002435-86008415:+|1.7317089423673095|0.0401035919495761|5.43|151.0|207|1|anti-sense;L1PA6_dup5855|chr22:17932085-17936587:+|1.3971618577956435|0.0634454800697639|4.46|151.0|269|3|anti-sense;L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|356|3|anti-sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|369|3|anti-sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|369|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 572.263671875 2 572.264296 1142.51404 0.40301 0.00023063 -0.82063 -0.00046962 -0.41762 -0.00023899 572.263732138382 69.478 0.82611 72.754 72.433 73.26 3.2761 141 67 3 0 0 0 0.38932 3 16841 16841;16952;17020 20.454 1.1966 1 291780 3938 13486 2514 2518 4947;4948;4949 4947 -0.05151781257654875 DPVIMMFAGY 10 Unmodified _DPVIMMFAGY_ 0 0 0 L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|369|3|anti-sense;L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|278|2|anti-sense;L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|244|3|anti-sense;L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|213|1|anti-sense;L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|345|3|anti-sense;L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|227|2|anti-sense;L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|123|2|anti-sense;L1PA6_dup2435|chr6:75682406-75688529:-|8.3081442460004|0.2963414194894635|4.81|151.0|224|1|anti-sense;L1PA6_dup2007|chr5:78435234-78441339:-|3.071527030732481|0.1148923742763176|4.74|151.0|216|1|anti-sense;L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|307|3|anti-sense;L1PA6_dup4702|chr12:47674234-47679408:+|3.42160626153214|0.3741802570707959|3.19|150.0|302|3|anti-sense;L1PA6_dup3736|chrX:86002435-86008415:+|1.7317089423673095|0.0401035919495761|5.43|151.0|207|1|anti-sense;L1PA6_dup5855|chr22:17932085-17936587:+|1.3971618577956435|0.0634454800697639|4.46|151.0|269|3|anti-sense;L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|356|3|anti-sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|369|3|anti-sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|369|3|anti-sense MSMS UPN47_class_I_Rep_3 4 572.2647094726562 2 572.264296 1142.51404 NaN NaN NaN NaN NaN NaN NaN 69.852 1 73.056 72.556 73.556 3.2044 0 0 0 0.53105 1 17056 17056 14.838 0.93222 1 3939 13486 2514 2518 4950 4950 -0.05151781257654875 DPVIWKYE 8 Unmodified _DPVIWKYE_ 0 0 0 REV__ENST00000487986.1_1_3:193332581-193346300:+|nuORF REV__ENST00000487986.1_1_3:193332581-193346300:+|nuORF MSMS UPN47_class_I_Rep_2 3 525.2708129882812 2 525.26875 1048.52295 NaN NaN NaN NaN NaN NaN NaN 58.995 1 62.276 61.776 62.776 3.2818 0 0 0 0.4044 1 13699 13699 4.756 0.42677 1 + 3940 21151 2515 2519 4951 4951 0.00062651694656779 DPVLAEFITC 10 Unmodified _DPVLAEFITC_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|22|2|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|22|2|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.2756958007812 2 554.273175 1106.5318 0.21427 0.00011876 3.6339 0.0020142 3.8482 0.0021329 554.2751557463785 48.326 0.20841 52.008 51.937 52.145 3.6819 15 12 2 0 0 0 0.56078 1 10418 10418 3.2813 0.70383 1 39798 3941 8551 2516 2520 4952 4952 -0.017207427311632273 DPVLKKKKK 9 Unmodified _DPVLKKKKK_ 0 0 0 AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|8|2|sense AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|8|2|sense AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 542.3663330078125 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 39.438 1 39.438 38.938 39.938 0 0 0 0 0.4007 1 7579 7579 0.52476 0.52476 1 3942 91 2517 2521 4953 4953 0.17951447570453638 DPVQKAVL 8 Unmodified _DPVQKAVL_ 0 0 0 nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A nc|ENSG00000161642|Q96PM9-2|ZNF385A nc|ENSG00000161642|Q96PM9-2|ZNF385A MULTI-MSMS UPN47_class_I_Rep_1 2 435.2580261230469 2 435.258185 868.501818 -0.3993 -0.0001738 0.32741 0.00014251 -0.071888 -3.129E-05 435.258236577128 35.519 0.61118 39.196 38.93 39.541 3.6762 81 40 3 0 0 0 0.82752 2 6520 6510;6520 26.884 0 1 118220 3943 3904 2518 2522 4954;4955 4955 0.062306863857997996 DPVQKAVL 8 Unmodified _DPVQKAVL_ 0 0 0 nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A nc|ENSG00000161642|Q96PM9-2|ZNF385A nc|ENSG00000161642|Q96PM9-2|ZNF385A MULTI-MSMS UPN47_class_I_Rep_2 3 435.2581787109375 2 435.258185 868.501818 -0.76362 -0.00033237 0.68258 0.0002971 -0.081038 -3.5272E-05 435.25842550497686 35.779 0.64339 39.19 38.884 39.528 3.4114 75 44 2 0 0 0 0.82752 1 6650 6650 14.838 0 1 118270 3944 3904 2518 2522 4956 4956 0.062306863857997996 DPVQKAVL 8 Unmodified _DPVQKAVL_ 0 0 0 nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A nc|ENSG00000161642|Q96PM9-2|ZNF385A nc|ENSG00000161642|Q96PM9-2|ZNF385A MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.258185 868.501818 -0.94384 -0.00041081 0.75569 0.00032892 -0.18815 -8.1892E-05 435.25836703011 35.903 0.62598 39.157 38.848 39.474 3.2547 -0.023872 0.00013137 NaN 14.838 87 41 3 NaN NaN NaN NaN 0 NaN NaN 0 133130 3945 3904 2518 2522 0.062306863857997996 DPVVEWEQK 9 Unmodified _DPVVEWEQK_ 0 0 0 REV__L1MC5a_dup14961|chr17:49745329-49745912:+|1.3108329883657852|0.0420379595794562|4.96|151.0|13|2|sense REV__L1MC5a_dup14961|chr17:49745329-49745912:+|1.3108329883657852|0.0420379595794562|4.96|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 565.2794799804688 2 565.279846 1128.54514 NaN NaN NaN NaN NaN NaN NaN 117.34 1 120.94 120.44 121.44 3.6036 0 0 0 0.4007 1 29088 29088 0.52476 0 1 + 3946 27137 2519 2523 4957 4957 -0.013991686275630855 DPYIYIRAP 9 Unmodified _DPYIYIRAP_ 0 0 0 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 MSMS UPN48_class_I_Rep_3 7 554.2973022460938 2 554.295299 1106.57605 NaN NaN NaN NaN NaN NaN NaN 69.334 1 72.846 72.346 73.346 3.5128 0 0 0 0.37476 1 15964 15964 6.7232 0 1 + 3947 18857 2520 2524 4958 4958 0.027020294773365094 DPYLGFQTHK 10 Unmodified _DPYLGFQTHK_ 0 0 0 ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B ENSG00000110066|ENST00000304363|KMT5B ENSG00000110066|ENST00000304363|KMT5B MULTI-MSMS UPN47_class_I_Rep_2 3 603.3011474609375 2 603.301113 1204.58767 0.046787 2.8226E-05 -0.38045 -0.00022952 -0.33366 -0.0002013 603.3007926741454 25.829 0.67677 29.324 29.029 29.705 3.4945 113 62 3 0 0 0 0.56354 1 3693 3693 1.3295 0 1 139650 3948 1926 2521 2525 4959 4959 -0.006437734993596678 DQEDELPF 8 Unmodified _DQEDELPF_ 0 0 0 REV__Tigger4_dup650|chr6:144167916-144169663:-|3.0911156952309824|0.042742963126863|6.18|150.0|108|3|anti-sense REV__Tigger4_dup650|chr6:144167916-144169663:-|3.0911156952309824|0.042742963126863|6.18|150.0|108|3|anti-sense MSMS UPN47_class_I_Rep_1 2 496.7122802734375 2 496.714005 991.413456 NaN NaN NaN NaN NaN NaN NaN 27.946 1 31.712 31.212 32.212 3.7662 0 0 0 0.40604 1 4234 4234 2.5775 0 1 + 3949 32783 2522 2526 4960 4960 -0.0825939871533592 DQERLRRVAE 10 Unmodified _DQERLRRVAE_ 0 0 0 REV__ENSG00000203727|ENST00000367474|SAMD5 REV__ENSG00000203727|ENST00000367474|SAMD5 MSMS UPN48_class_I_Rep_3 7 636.3435668945312 2 636.344375 1270.6742 NaN NaN NaN NaN NaN NaN NaN 66.964 1 70.472 69.972 70.972 3.5077 0 0 0 0.53105 1 15251 15251 0.45834 0 1 + 3950 21171 2523 2527 4961 4961 0.04968606055240343 DQHSVQVF 8 Unmodified _DQHSVQVF_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-MSMS UPN47_class_I_Rep_1 2 480.23260498046875 2 480.232699 958.450845 -0.34698 -0.00016663 0.20825 0.00010001 -0.13874 -6.6627E-05 480.2326857814434 22.867 0.81178 26.571 26.145 26.957 3.7042 162 75 3 0 0 0 0.82752 1 2632 2632 8.1555 0 1 267550 3951 929 2524 2528 4962 4962 -0.030042626590443433 DQHSVQVF 8 Unmodified _DQHSVQVF_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-MSMS UPN47_class_I_Rep_2 3 480.23431396484375 2 480.232699 958.450845 -0.2203 -0.0001058 0.082485 3.9612E-05 -0.13781 -6.6183E-05 480.23262965290434 23.124 0.83502 26.569 26.153 26.988 3.4447 177 76 3 0 0 0 0.82752 2 2767 2767;2939 17.113 0 1 209310 3952 929 2524 2528 4963;4964 4963 -0.030042626590443433 DQHSVQVF 8 Unmodified _DQHSVQVF_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-MSMS UPN47_class_I_Rep_3 4 480.2326354980469 2 480.232699 958.450845 -0.64547 -0.00030997 0.45813 0.00022001 -0.18733 -8.9964E-05 480.23283446220023 23.216 1.1688 26.566 26.132 27.301 3.3503 177 95 3 0 0 0 0.82752 1 2866 2866 29.082 0 1 225010 3953 929 2524 2528 4965 4965 -0.030042626590443433 DQIKLWTG 8 Unmodified _DQIKLWTG_ 0 0 0 REV__MLT1H2-int_dup3|chr1:44478243-44478440:-|3.6584738342194023|1e-05|18.48|149.0|11|2|anti-sense REV__MLT1H2-int_dup3|chr1:44478243-44478440:-|3.6584738342194023|1e-05|18.48|149.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.76104736328125 2 480.761092 959.507631 0.0635 3.0528E-05 -0.15113 -7.2656E-05 -0.087626 -4.2127E-05 480.7610609916823 53.768 1.3131 57.295 56.782 58.095 3.5278 159 74 4 0 0 0 0.82752 1 12089 12089 48.346 0 1 715870 + 3954 31765 2525 2529 4966 4966 0.026257848974523768 DQIKLWTG 8 Unmodified _DQIKLWTG_ 0 0 0 REV__MLT1H2-int_dup3|chr1:44478243-44478440:-|3.6584738342194023|1e-05|18.48|149.0|11|2|anti-sense REV__MLT1H2-int_dup3|chr1:44478243-44478440:-|3.6584738342194023|1e-05|18.48|149.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.7610168457031 2 480.761092 959.507631 0.10943 5.2609E-05 -0.18555 -8.9207E-05 -0.076125 -3.6598E-05 480.76098467489265 54.131 1.0203 57.316 56.996 58.017 3.1856 170 62 4 0 0 0 0.82752 1 12352 12352 32.305 0 1 857500 + 3955 31765 2525 2529 4967 4967 0.026257848974523768 DQKARGLL 8 Unmodified _DQKARGLL_ 0 0 0 REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A MULTI-MSMS UPN47_class_I_Rep_2 3 450.766357421875 2 450.766709 899.518865 -0.5496 -0.00024774 0.028041 1.264E-05 -0.52156 -0.0002351 450.7665522025698 28.107 0.87535 31.606 31.296 32.172 3.4986 153 73 3 0 0 0 0.82752 1 4422 4422 2.0598 0 1 202630 + 3956 20990 2526 2530 4968 4968 0.06508606991610577 DQKDHAVF 8 Unmodified _DQKDHAVF_ 0 0 0 ENST00000495015.5_1_9:33025323-33036160:+|nuORF;ENST00000465677.1_1_9:33034269-33037131:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 ENST00000495015.5_1_9:33025323-33036160:+|nuORF ENST00000495015.5_1_9:33025323-33036160:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 480.2325744628906 2 480.232699 958.450845 -0.34698 -0.00016663 0.20825 0.00010001 -0.13874 -6.6627E-05 480.2326857814434 22.867 0.81178 26.571 26.145 26.957 3.7042 162 75 3 0 0 0 0.82752 1 2812 2812 27.629 4.8925 1 267550 3957 1275 2527 2531 4969 4969 -0.03004262659055712 DQKDHAVF 8 Unmodified _DQKDHAVF_ 0 0 0 ENST00000495015.5_1_9:33025323-33036160:+|nuORF;ENST00000465677.1_1_9:33034269-33037131:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 ENST00000495015.5_1_9:33025323-33036160:+|nuORF ENST00000495015.5_1_9:33025323-33036160:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.232666015625 2 480.232699 958.450845 -0.2203 -0.0001058 0.082485 3.9612E-05 -0.13781 -6.6183E-05 480.23262965290434 23.124 0.83502 26.569 26.153 26.988 3.4447 177 76 3 0 0 0 0.82752 1 2868 2868 47.749 3.8904 1 209310 3958 1275 2527 2531 4970 4970 -0.03004262659055712 DQKDHAVF 8 Unmodified _DQKDHAVF_ 0 0 0 ENST00000495015.5_1_9:33025323-33036160:+|nuORF;ENST00000465677.1_1_9:33034269-33037131:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1 ENST00000495015.5_1_9:33025323-33036160:+|nuORF ENST00000495015.5_1_9:33025323-33036160:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.2325439453125 2 480.232699 958.450845 -0.64547 -0.00030997 0.45813 0.00022001 -0.18733 -8.9964E-05 480.23283446220023 23.216 1.1688 26.566 26.132 27.301 3.3503 177 95 3 0 0 0 0.82752 1 2904 2904 38.176 9.094 1 225010 3959 1275 2527 2531 4971 4971 -0.03004262659055712 DQKGVTVQAL 10 Unmodified _DQKGVTVQAL_ 0 0 0 ENSG00000153086|ENST00000356140|ACMSD ENSG00000153086|ENST00000356140|ACMSD ENSG00000153086|ENST00000356140|ACMSD MULTI-MSMS UPN47_class_I_Rep_3 4 529.7957153320312 2 529.795663 1057.57677 0.318 0.00016848 -0.057677 -3.0557E-05 0.26032 0.00013792 529.7956764324192 48.109 0.51005 51.349 51.123 51.634 3.2405 51 35 2 0 0 0 0.44401 1 10455 10455 16.149 1.7437 1 92868 3960 3637 2528 2532 4972 4972 0.05028824126384279 DQKRIKKKKKH 11 Unmodified _DQKRIKKKKKH_ 0 0 0 L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|17|1|sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|17|1|sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|17|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 479.78741455078125 3 479.643927 1435.90995 0.15989 7.669E-05 -0.80012 -0.00038377 -0.64023 -0.00030708 479.64334073013305 43.415 0.097847 47.177 47.111 47.209 3.7617 6 5 2 0 0 0 22.551 1 8140 8140 0.45452 0.35968 1 71101 3961 15360 2529 2533 4973 4973 0.20943162970456797 DQKRIKKKKKH 11 Unmodified _DQKRIKKKKKH_ 0 0 0 L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|17|1|sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|17|1|sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|17|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 479.643927 1435.90995 0.22768 0.0001092 -1.367 -0.00065566 -1.1393 -0.00054645 479.6434614836103 46.783 0.11877 46.783 46.68 46.799 0 -0.19672 -0.00016087 NaN 0.45452 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 169610 3962 15360 2529 2533 0.20943162970456797 DQKRKPKKPN 10 Unmodified _DQKRKPKKPN_ 0 0 0 REV__nc|ENSG00000126970|Q9NQZ6-3|ZC4H2 REV__nc|ENSG00000126970|Q9NQZ6-3|ZC4H2 MSMS UPN48_class_I_Rep_2 6 619.8697509765625 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 87.767 1 91.495 90.995 91.995 3.7279 0 0 0 0.53105 1 20886 20886 1.6526 0.17072 1 + 3963 18868 2530 2534 4974 4974 0.11614974819940471 DQLQPFNI 8 Unmodified _DQLQPFNI_ 0 0 0 REV__LTR70_dup14|chr4:339541-341032:+|1.9122417352054148|0.1892397827647089|3.34|151.0|107|3|anti-sense REV__LTR70_dup14|chr4:339541-341032:+|1.9122417352054148|0.1892397827647089|3.34|151.0|107|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.75079345703125 2 487.750724 973.486896 0.18488 9.0176E-05 -0.24931 -0.0001216 -0.064425 -3.1423E-05 487.75060551118065 54.178 0.86708 57.363 56.954 57.821 3.1856 93 56 2 0 0 0 0.82752 1 12292 12292 14.838 0 1 124680 + 3964 30999 2531 2535 4975 4975 -0.0009080548219344564 DQLRHCSM 8 Unmodified _DQLRHCSM_ 0 0 0 REV__ENSG00000198799|ENST00000361127|LRIG2 REV__ENSG00000198799|ENST00000361127|LRIG2 MSMS UPN47_class_I_Rep_1 2 495.21978759765625 2 495.218211 988.42187 NaN NaN NaN NaN NaN NaN NaN 53.433 1 56.961 56.461 57.461 3.5278 0 0 0 0.40527 1 11971 11971 3.5965 1.7523 1 + 3965 21148 2532 2536 4976 4976 -0.0728044655135136 DQLRLGAK 8 Unmodified _DQLRLGAK_ 0 0 0 ENST00000223791.7_2_9:117130488-117139135:-|nuORF;nc|ENSG00000106948|Q7Z591-3|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA ENST00000223791.7_2_9:117130488-117139135:-|nuORF ENST00000223791.7_2_9:117130488-117139135:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.7662353515625 2 450.766709 899.518865 -0.39175 -0.00017659 -0.085425 -3.8507E-05 -0.47717 -0.00021509 450.7665539244433 27.967 0.73499 31.733 31.418 32.153 3.7662 125 59 3 0 0 0 0.82752 1 4340 4340 2.3027 0 1 239980 3966 1805 2533 2537 4977 4977 0.06508606991599208 DQLSDERFQ 9 Unmodified _DQLSDERFQ_ 0 0 0 ENST00000314742.12_2_15:101120688-101120928:-|nuORF ENST00000314742.12_2_15:101120688-101120928:-|nuORF ENST00000314742.12_2_15:101120688-101120928:-|nuORF MSMS UPN47_class_I_Rep_2 3 569.2615966796875 2 569.262185 1136.50982 NaN NaN NaN NaN NaN NaN NaN 30.596 1 34.078 33.578 34.578 3.4821 0 0 0 0.38916 1 5065 5065 3.2813 0 1 3967 6128 2534 2538 4978 4978 -0.05297831155394306 DQLSGGVEL 9 Unmodified _DQLSGGVEL_ 0 0 0 REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A MULTI-MSMS UPN47_class_I_Rep_3 4 459.2321472167969 2 459.232364 916.450176 -0.33828 -0.00015535 0.35508 0.00016306 0.016802 7.7161E-06 459.2324440187096 45.414 1.2805 48.658 48.314 49.595 3.2441 162 77 3 0 0 0 0.090251 1 9729 9729 36.127 3.8215 1 529500 + 3968 19350 2535 2539 4979 4979 -0.011391020987502998 DQLVAPGQF 9 Unmodified _DQLVAPGQF_ 0 0 0 REV__L1M7_dup2842|chr15:89841193-89842606:+|2.215380262982615|0.1782121321853554|3.64|151.0|56|1|anti-sense REV__L1M7_dup2842|chr15:89841193-89842606:+|2.215380262982615|0.1782121321853554|3.64|151.0|56|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.7509460449219 2 487.750724 973.486896 0.33193 0.0001619 -0.35783 -0.00017453 -0.025901 -1.2633E-05 487.75058511377966 53.994 0.79566 57.312 56.884 57.68 3.3187 81 48 2 0 0 0 0.32682 2 12139 12139;12226 12.241 8.1555 1 146410 + 3969 24737 2536 2540 4980;4981 4980 -0.0009080548219344564 DQLVAPGQF 9 Unmodified _DQLVAPGQF_ 0 0 0 REV__L1M7_dup2842|chr15:89841193-89842606:+|2.215380262982615|0.1782121321853554|3.64|151.0|56|1|anti-sense REV__L1M7_dup2842|chr15:89841193-89842606:+|2.215380262982615|0.1782121321853554|3.64|151.0|56|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.7506408691406 2 487.750724 973.486896 0.18488 9.0176E-05 -0.24931 -0.0001216 -0.064425 -3.1423E-05 487.75060551118065 54.178 0.86708 57.363 56.954 57.821 3.1856 93 56 2 0 0 0 0.24936 1 12238 12238 17.113 3.2068 1 124680 + 3970 24737 2536 2540 4982 4982 -0.0009080548219344564 DQNEVFNN 8 Unmodified _DQNEVFNN_ 0 0 0 REV__L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|43|3|sense REV__L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|43|3|sense MSMS UPN48_class_I_Rep_2 6 490.2084655761719 2 490.209421 978.404288 NaN NaN NaN NaN NaN NaN NaN 75.86 1 79.461 78.961 79.961 3.6011 0 0 0 0.40643 1 17903 17903 2.0598 0.40713 1 + 3971 27057 2537 2541 4983 4983 -0.08577747280992298 DQNIFSKNFV 10 Unmodified _DQNIFSKNFV_ 0 0 0 REV__ENSG00000106993|ENST00000381854|CDC37L1 REV__ENSG00000106993|ENST00000381854|CDC37L1 MSMS UPN47_class_I_Rep_1 2 404.54107666015625 3 404.540022 1210.59824 NaN NaN NaN NaN NaN NaN NaN 28.432 1 32.198 31.698 32.698 3.7662 0 0 0 0.53105 1 4378 4378 0.50596 0 1 + 3972 18346 2538 2542 4984 4984 0.0013620915506180609 DQNKFPEDHT 10 Unmodified _DQNKFPEDHT_ 0 0 0 ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK MULTI-SECPEP UPN47_class_I_Rep_2 3 616.275146484375 2 615.772916 1229.53128 0.51688 0.00031828 -1.0059 -0.00061943 -0.48906 -0.00030115 616.2733979620873 54.068 0.10909 57.387 57.34 57.45 3.3187 6 4 2 0 0 0 0.84575 1 12201 12201 1.3295 0.5359 1 48258 3973 2396 2539 2543 4985 4985 -0.07430446126682 DQNKFPEDHT 10 Unmodified _DQNKFPEDHT_ 0 0 0 ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK MSMS UPN47_class_I_Rep_3 4 615.7722778320312 2 615.772916 1229.53128 NaN NaN NaN NaN NaN NaN NaN 54.1 1 57.286 56.786 57.786 3.1856 0 0 0 0.53105 1 12256 12256 1.4819 0 1 3974 2396 2539 2543 4986 4986 -0.07430446126682 DQNNSSPSEY 10 Unmodified _DQNNSSPSEY_ 0 0 0 REV__ENSG00000173517|ENST00000682557|PEAK1 REV__ENSG00000173517|ENST00000682557|PEAK1 MULTI-MSMS UPN47_class_I_Rep_2 3 570.7138671875 2 570.725632 1139.43671 0.42889 0.00024478 -1.9771 -0.0011284 -1.5482 -0.00088358 570.7244962216154 62.927 0.38494 66.183 65.977 66.362 3.2558 28 23 2 0 0 0 0.56118 1 14845 14845 2.9952 0.10602 1 91073 + 3975 20486 2540 2544 4987 4987 -0.12743004668641333 DQNSTTEL 8 Unmodified _DQNSTTEL_ 0 0 0 REV__nc|ENSG00000091409|P23229-7|ITGA6 REV__nc|ENSG00000091409|P23229-7|ITGA6 MSMS UPN47_class_I_Rep_1 2 454.2039489746094 2 454.203804 906.393055 NaN NaN NaN NaN NaN NaN NaN 30.251 1 33.996 33.496 34.496 3.7449 0 0 0 0.40643 1 4920 4920 2.0598 0.21551 1 + 3976 18020 2541 2545 4988 4988 -0.06388569375155839 DQPPMKTL 8 Unmodified _DQPPMKTL_ 0 0 0 MER68_dup30|chr1:84206362-84206912:-|1.2038867112044556|0.060674856993247|4.31|151.0|18|3|sense MER68_dup30|chr1:84206362-84206912:-|1.2038867112044556|0.060674856993247|4.31|151.0|18|3|sense MER68_dup30|chr1:84206362-84206912:-|1.2038867112044556|0.060674856993247|4.31|151.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 465.2406921386719 2 465.241678 928.468803 0.242 0.00011259 -1.1486 -0.00053439 -0.90663 -0.0004218 465.24090675683016 74.875 0.60456 78.441 78.132 78.737 3.5659 113 65 3 0 0 0 0.82752 1 17540 17540 22.736 2.2827 1 336420 3977 16195 2542 2546 4989 4989 0.0017073627145691717 DQPPVLKN 8 Unmodified _DQPPVLKN_ 0 0 0 REV__L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|78|2|sense REV__L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|78|2|sense MSMS UPN47_class_I_Rep_2 3 455.752685546875 2 455.753267 909.491981 NaN NaN NaN NaN NaN NaN NaN 29.408 1 32.9 32.4 33.4 3.4923 0 0 0 0.40604 1 4705 4705 2.5775 0 1 + 3978 29024 2543 2547 4990 4990 0.03361498380422745 DQQAYEEAGPA 11 Unmodified _DQQAYEEAGPA_ 0 0 0 REV__ENST00000472031.1_1_17:40118826-40125939:+|nuORF REV__ENST00000472031.1_1_17:40118826-40125939:+|nuORF MSMS UPN47_class_I_Rep_2 3 589.7540283203125 2 589.75165 1177.48875 NaN NaN NaN NaN NaN NaN NaN 79.531 1 82.886 82.386 83.386 3.3554 0 0 0 0.27893 1 19802 19802 13.615 0.5724 1 + 3979 20496 2544 2548 4991 4991 -0.09289841254894782 DQRQKIKAA 9 Unmodified _DQRQKIKAA_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MSMS UPN47_class_I_Rep_1 2 529.3088989257812 2 529.309272 1056.60399 NaN NaN NaN NaN NaN NaN NaN 13.092 1 16.549 16.049 17.049 3.457 0 0 0 0.39598 1 241 241 1.6526 0 1 3980 3076 2545 2549 4992 4992 0.07795352457424087 DQRRLMRH 8 Unmodified _DQRRLMRH_ 0 0 0 L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|9|1|sense L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|9|1|sense L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 556.2970581054688 2 556.298716 1110.58288 NaN NaN NaN NaN NaN NaN NaN 86.042 1 89.657 89.157 90.157 3.6153 0 0 0 0.40604 1 21488 21488 2.5775 0.51773 1 3981 11528 2546 2550 4993 4993 0.03201063876917942 DQRYYKAAT 9 Unmodified _DQRYYKAAT_ 0 0 0 L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|26|1|sense L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|26|1|sense L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|26|1|sense MSMS UPN47_class_I_Rep_1 2 558.2749633789062 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 34.572 1 38.258 37.758 38.758 3.6859 0 0 0 0.3967 1 6238 6238 1.4819 0.28856 1 3982 13856 2547 2551 4994 4994 -0.01196633050494711 DQSASHSALER 11 Unmodified _DQSASHSALER_ 0 0 0 REV__ENST00000258955.6_1_17:48562280-48562508:+|nuORF REV__ENST00000258955.6_1_17:48562280-48562508:+|nuORF MSMS UPN48_class_I_Rep_3 7 600.78271484375 2 600.783815 1199.55308 NaN NaN NaN NaN NaN NaN NaN 29.575 1 33.304 32.804 33.804 3.7286 0 0 0 0.38417 1 4164 4164 0.96228 0 1 + 3983 21546 2548 2552 4995 4995 -0.038716413781230585 DQSITMYFI 9 Unmodified _DQSITMYFI_ 0 0 0 REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|30|2|sense REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 559.265625 2 559.26535 1116.51615 NaN NaN NaN NaN NaN NaN NaN 77.485 1 80.914 80.414 81.414 3.4289 0 0 0 0.38784 1 19227 19227 3.5965 0.70727 1 + 3984 26265 2549 2553 4996 4996 -0.037450292482162695 DQSSKDTMNG 10 Unmodified _DQSSKDTMNG_ 0 0 0 REV__nc|ENSG00000275410|P35680-3|HNF1B REV__nc|ENSG00000275410|P35680-3|HNF1B MSMS UPN48_class_I_Rep_3 7 541.7233276367188 2 541.724578 1081.4346 NaN NaN NaN NaN NaN NaN NaN 74.396 1 77.946 77.446 78.446 3.5505 0 0 0 0.53105 1 17428 17428 2.4985 0 1 + 3985 21431 2550 2554 4997 4997 -0.10285756678126745 DQTAPPLTF 9 Unmodified _DQTAPPLTF_ 0 0 0 REV__L1MB8_dup14227|chr17:1374335-1374809:-|1.6919984720094896|0.0457469163087371|5.21|151.0|22|1|anti-sense REV__L1MB8_dup14227|chr17:1374335-1374809:-|1.6919984720094896|0.0457469163087371|5.21|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.24859619140625 2 495.250557 988.486562 NaN NaN NaN NaN NaN NaN NaN 60.869 1 64.382 63.882 64.882 3.5129 0 0 0 0.37476 1 13406 13406 6.7232 1.4925 1 + 3986 26371 2551 2555 4998 4998 -0.008142252020547858 DQTLIKMKLVT 11 Unmodified _DQTLIKMKLVT_ 0 0 0 REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF MSMS UPN46_class_I_Rep_3 1 645.37841796875 2 645.378506 1288.74246 NaN NaN NaN NaN NaN NaN NaN 75.356 1 75.356 74.856 75.856 0 0 0 0 0.38417 1 17517 17517 4.897 0 1 + 3987 21494 2552 2556 4999 4999 0.10963714590843665 DQTLIKMKLVT 11 Unmodified _DQTLIKMKLVT_ 0 0 0 REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF MSMS UPN48_class_I_Rep_1 5 645.3319702148438 2 645.378506 1288.74246 NaN NaN NaN NaN NaN NaN NaN 62.185 1 65.653 65.153 66.153 3.4678 0 0 0 0.38417 1 13898 13898 2.4985 0 1 + 3988 21494 2552 2556 5000 5000 0.10963714590843665 DQTLIKMKLVT 11 Unmodified _DQTLIKMKLVT_ 0 0 0 REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF MSMS UPN48_class_I_Rep_1 5 645.3778076171875 2 645.378506 1288.74246 NaN NaN NaN NaN NaN NaN NaN 102.15 1 105.76 105.26 106.26 3.6164 0 0 0 0.38417 1 24641 24641 2.4985 0 1 + 3989 21494 2552 2556 5001 5001 0.10963714590843665 DQTLIKMKLVT 11 Unmodified _DQTLIKMKLVT_ 0 0 0 REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF MSMS UPN48_class_I_Rep_2 6 645.37939453125 2 645.378506 1288.74246 NaN NaN NaN NaN NaN NaN NaN 71.872 1 75.422 74.922 75.922 3.5505 0 0 0 0.38417 1 16796 16796 4.897 0 1 + 3990 21494 2552 2556 5002 5002 0.10963714590843665 DQTLIKMKLVT 11 Unmodified _DQTLIKMKLVT_ 0 0 0 REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF MSMS UPN48_class_I_Rep_2 6 645.3784790039062 2 645.378506 1288.74246 NaN NaN NaN NaN NaN NaN NaN 101.72 1 105.45 104.95 105.95 3.7252 0 0 0 0.38417 1 24119 24119 2.4985 0 1 + 3991 21494 2552 2556 5003 5003 0.10963714590843665 DQVLERYKRLK 11 Unmodified _DQVLERYKRLK_ 0 0 0 REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|158|3|sense REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|158|3|sense MSMS UPN46_class_I_Rep_3 1 483.2686462402344 3 483.284175 1446.8307 NaN NaN NaN NaN NaN NaN NaN 48.865 1 48.865 48.365 49.365 0 0 0 0 0.38417 1 10216 10216 5.8681 1.1522 1 + 3992 29111 2553 2557 5004 5004 0.12515471225674446 DQVRLIPA 8 Unmodified _DQVRLIPA_ 0 0 0 L1MB7_dup20111|chr17:61694117-61696579:-|1.535225846775249|0.013990509203997|6.78|149.0|39|2|sense L1MB7_dup20111|chr17:61694117-61696579:-|1.535225846775249|0.013990509203997|6.78|149.0|39|2|sense L1MB7_dup20111|chr17:61694117-61696579:-|1.535225846775249|0.013990509203997|6.78|149.0|39|2|sense MSMS UPN47_class_I_Rep_3 4 456.2684326171875 2 456.269084 910.523616 NaN NaN NaN NaN NaN NaN NaN 45.645 1 48.89 48.39 49.39 3.2441 0 0 0 0.40157 1 9691 9691 7.2892 0.56607 1 3993 10786 2554 2558 5005 5005 0.06477491134364755 DQVYFCVF 8 Unmodified _DQVYFCVF_ 0 0 0 REV__L1PA14_dup2239|chr10:79752523-79754034:+|1.7815908794479487|0.2621637606055207|2.76|151.0|54|1|anti-sense REV__L1PA14_dup2239|chr10:79752523-79754034:+|1.7815908794479487|0.2621637606055207|2.76|151.0|54|1|anti-sense MSMS UPN46_class_I_Rep_3 1 510.7269592285156 2 510.728403 1019.44225 NaN NaN NaN NaN NaN NaN NaN 40.678 1 40.678 40.178 41.178 0 0 0 0 0.36705 1 7911 7911 18.135 2.2878 1 + 3994 29151 2555 2559 5006 5006 -0.06668952619884294 DQYKATDFV 9 Unmodified _DQYKATDFV_ 0 0 0 nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2 nc|ENSG00000182054|P48735-2|IDH2 nc|ENSG00000182054|P48735-2|IDH2 MSMS UPN48_class_I_Rep_1 5 543.7599487304688 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 76.734 1 80.244 79.744 80.744 3.5102 0 0 0 0.39598 1 18230 18230 1.6526 0.85899 1 3995 4932 2556 2560 5007 5007 -0.03639144035969366 DQYPSAAWGLG 11 Unmodified _DQYPSAAWGLG_ 0 0 0 MER1B_dup1394|chr4:88015893-88016229:-|1.3711685836192098|0.0391779971688978|5.13|151.0|18|1|anti-sense MER1B_dup1394|chr4:88015893-88016229:-|1.3711685836192098|0.0391779971688978|5.13|151.0|18|1|anti-sense MER1B_dup1394|chr4:88015893-88016229:-|1.3711685836192098|0.0391779971688978|5.13|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.7701416015625 2 582.769645 1163.52474 NaN NaN NaN NaN NaN NaN NaN 36.393 1 40.063 39.563 40.563 3.6692 0 0 0 0.38417 1 6787 6787 1.1933 0.39971 1 3996 15811 2557 2561 5008 5008 -0.0504833928739572 DRADARYR 8 Unmodified _DRADARYR_ 0 0 0 REV__ENSG00000205669|ENST00000645972|ACOT6 REV__ENSG00000205669|ENST00000645972|ACOT6 MSMS UPN48_class_I_Rep_1 5 511.6874084472656 2 511.759946 1021.50534 NaN NaN NaN NaN NaN NaN NaN 116.47 1 120.1 119.6 120.6 3.6254 0 0 0 0.40625 1 28363 28363 2.3027 0 1 + 3997 21223 2558 2562 5009 5009 -0.004552507876383061 DRAEVKLIY 9 Unmodified _DRAEVKLIY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MSMS UPN47_class_I_Rep_1 2 553.81396484375 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 57.869 1 61.306 60.806 61.806 3.437 0 0 0 0.25702 1 13320 13320 13.042 1.4022 1 + 3998 17969 2559 2563 5010 5010 0.06457701023100526 DRAHIQSL 8 Unmodified _DRAHIQSL_ 0 0 0 nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1 nc|ENSG00000133895|O00255-3|MEN1 nc|ENSG00000133895|O00255-3|MEN1 MSMS UPN47_class_I_Rep_1 2 470.2539367675781 2 470.253966 938.493378 NaN NaN NaN NaN NaN NaN NaN 24.241 1 27.971 27.471 28.471 3.7298 0 0 0 0.40292 1 3135 3135 6.7232 0 1 3999 2822 2560 2564 5011 5011 0.021671324691851623 DRARALPA 8 Unmodified _DRARALPA_ 0 0 0 ENST00000377780.8_1_13:73355758-73356004:-|nuORF ENST00000377780.8_1_13:73355758-73356004:-|nuORF ENST00000377780.8_1_13:73355758-73356004:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.2509765625 2 435.251226 868.487899 -0.4012 -0.00017462 -0.15926 -6.9317E-05 -0.56046 -0.00024394 435.25102546217005 71.164 1.8647 74.382 72.91 74.775 3.2188 221 159 2 0 0 0 0.82752 1 17172 17172 2.0598 0.57785 1 332500 4000 6464 2561 2565 5012 5012 0.04839453677357142 DRCKTEFFY 9 Unmodified _DRCKTEFFY_ 0 0 0 REV__ENSG00000134259|ENST00000369512|NGF REV__ENSG00000134259|ENST00000369512|NGF MSMS UPN48_class_I_Rep_2 6 604.773681640625 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 26.138 1 29.771 29.271 30.271 3.6332 0 0 0 0.39428 1 3287 3287 2.0598 0 1 + 4001 19092 2562 2566 5013 5013 -0.062271086424289024 DRCSPCCHQS 10 Unmodified _DRCSPCCHQS_ 0 0 0 REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF MSMS UPN48_class_I_Rep_2 6 568.2070922851562 2 568.207518 1134.40048 NaN NaN NaN NaN NaN NaN NaN 119.28 1 122.94 122.44 123.44 3.6652 0 0 0 0.53105 1 28624 28624 1.1933 0.50296 1 + 4002 21849 2563 2567 5014 5014 -0.1613419964237437 DRDEHLEH 8 Unmodified _DRDEHLEH_ 0 0 0 REV__ENST00000455774.1_1_10:29699301-29757982:+|nuORF REV__ENST00000455774.1_1_10:29699301-29757982:+|nuORF MSMS UPN47_class_I_Rep_2 3 525.7445678710938 2 525.733594 1049.45264 NaN NaN NaN NaN NaN NaN NaN 35.922 1 39.334 38.834 39.834 3.4114 0 0 0 0.40604 1 6680 6680 2.5775 0 1 + 4003 22407 2564 2568 5015 5015 -0.07011253641121584 DRDRVKICFD 10 Unmodified _DRDRVKICFD_ 0 0 0 REV__L1PB3_dup2664|chr12:42412223-42413526:-|1.4897998518382929|0.0492601515683032|4.92|151.0|58|1|anti-sense REV__L1PB3_dup2664|chr12:42412223-42413526:-|1.4897998518382929|0.0492601515683032|4.92|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_2 6 633.817626953125 2 633.816604 1265.61866 NaN NaN NaN NaN NaN NaN NaN 36.102 1 39.79 39.29 40.29 3.6877 0 0 0 0.53105 1 6032 6032 1.3295 0.72803 1 + 4004 30563 2565 2569 5016 5016 -0.0035294345675538352 DRDWIMYLF 9 Unmodified _DRDWIMYLF_ 0 0 0 REV__L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|56|1|anti-sense REV__L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|56|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.7993774414062 2 629.799891 1257.58523 NaN NaN NaN NaN NaN NaN NaN 33.537 1 33.537 33.037 34.037 0 0 0 0 0.40038 1 5878 5878 0.6015 0 1 + 4005 26134 2566 2570 5017 5017 -0.03325945228652927 DREKPRRIRQ 10 Unmodified _DREKPRRIRQ_ 0 0 0 REV__Tigger1_dup169|chr1:44467510-44468238:-|8.121569075381531|0.0129291866717322|9.29|150.0|50|3|anti-sense REV__Tigger1_dup169|chr1:44467510-44468238:-|8.121569075381531|0.0129291866717322|9.29|150.0|50|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.9324951171875 3 451.932248 1352.77491 0.15911 7.1905E-05 0.063928 2.8891E-05 0.22303 0.0001008 451.93229996547393 90.048 0.44078 93.738 93.386 93.826 3.6899 72 58 2 0 0 0 0.5652 1 22502 22502 0.15932 0 1 96195 + 4006 32383 2567 2571 5018 5018 0.11263682828735 DRFCRADAF 9 Unmodified _DRFCRADAF_ 0 0 0 REV__ENSG00000214456|ENST00000381848|PLIN5 REV__ENSG00000214456|ENST00000381848|PLIN5 MSMS UPN46_class_I_Rep_3 1 550.74853515625 2 550.750733 1099.48691 NaN NaN NaN NaN NaN NaN NaN 88.72 1 88.72 88.22 89.22 0 0 0 0 0.37476 1 21319 21319 6.7232 0.99131 1 + 4007 21261 2568 2572 5019 5019 -0.05885128753857316 DRFDSVILL 9 Unmodified _DRFDSVILL_ 0 0 0 REV__ENST00000474699.1_1_2:70443958-70451859:-|nuORF REV__ENST00000474699.1_1_2:70443958-70451859:-|nuORF MSMS UPN47_class_I_Rep_2 3 539.301025390625 2 539.300581 1076.58661 NaN NaN NaN NaN NaN NaN NaN 80.478 1 83.847 83.347 84.347 3.3694 0 0 0 0.381 1 20040 20040 5.2307 0 1 + 4008 22527 2569 2573 5020 5020 0.05138012131783398 DRFFLKFFLK 10 Unmodified _DRFFLKFFLK_ 0 0 0 ENST00000609967.5_1_20:2674291-2732741:+|nuORF;ENST00000519890.5_1_5:158126121-158500600:-|nuORF;ENST00000519739.5_1_5:158126121-158523319:-|nuORF;ENST00000522192.5_1_5:158126121-158523561:-|nuORF;nc|ENSG00000108001|Q9H4W6-2|EBF3;ENSG00000221818|ENST00000520164|EBF2;ENST00000518836.5_1_5:158126121-158526593:-|nuORF;ENSG00000164330|ENST00000313708|EBF1;nc|ENSG00000108001|Q9H4W6|EBF3;ENSG00000088881|ENST00000609451|EBF4;ENSG00000108001|ENST00000440978|EBF3;nc|ENSG00000088881|Q9BQW3-1|EBF4 ENST00000609967.5_1_20:2674291-2732741:+|nuORF ENST00000609967.5_1_20:2674291-2732741:+|nuORF MSMS UPN46_class_I_Rep_3 1 454.26483154296875 3 454.264053 1359.77033 NaN NaN NaN NaN NaN NaN NaN 99.503 1 99.503 99.003 100 0 0 0 0 0.53105 1 24242 24242 0.15932 0 1 4009 1322 2570 2574 5021 5021 0.10483405633272014 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS UPN47_class_I_Rep_1 2 436.8793029785156 3 436.879322 1307.61614 0.11713 5.1171E-05 1.0676 0.00046642 1.1847 0.00051759 436.87929316362477 88.575 0.23223 92.231 92.144 92.377 3.6563 41 29 2 0 0 0 0.49676 1 22172 22172 0.96228 0.33545 1 64910 4010 4678 2571 2575 5022 5022 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MSMS UPN47_class_I_Rep_1 2 436.8792724609375 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 93.833 1 97.569 97.069 98.069 3.736 0 0 0 0.39887 1 23329 23329 0.96228 0.26461 1 4011 4678 2571 2575 5023 5023 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-SECPEP UPN47_class_I_Rep_1 2 437.2572021484375 3 436.879322 1307.61614 0.1295 5.6576E-05 0.95336 0.0004165 1.0829 0.00047308 436.87912691246873 90.652 0.32014 94.342 94.219 94.54 3.6899 62 41 2 0 0 0 0.12522 1 22636 22636 0.96228 0.26461 1 50399 4012 4678 2571 2575 5024 5024 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS UPN48_class_I_Rep_1 5 436.8792724609375 3 436.879322 1307.61614 -0.03666 -1.6016E-05 1.4195 0.00062016 1.3829 0.00060415 436.87930439300004 86.853 0.37242 90.466 90.362 90.734 3.613 83 50 2 0 0 0 0.49676 1 20847 20847 0.96228 0.33545 1 69838 4013 4678 2571 2575 5025 5025 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MSMS UPN48_class_I_Rep_1 5 436.8795471191406 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 72.103 1 75.576 75.076 76.076 3.4732 0 0 0 0.39887 1 16901 16901 0.96228 0.26461 1 4014 4678 2571 2575 5026 5026 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MSMS UPN48_class_I_Rep_1 5 436.87945556640625 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 72.638 1 76.111 75.611 76.611 3.4732 0 0 0 0.39887 1 17061 17061 0.96228 0.26461 1 4015 4678 2571 2575 5027 5027 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MATCH UPN46_class_I_Rep_3 1 3 436.879322 1307.61614 0.15119 6.6053E-05 0.086552 3.7813E-05 0.23775 0.00010387 436.878902913274 92.2 0.19537 92.2 92.133 92.329 0 -0.010885 -0.0012915 NaN 0.96228 21 18 2 NaN NaN NaN NaN 0 NaN NaN 0 92556 4016 4678 2571 2575 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.879322 1307.61614 -0.20226 -8.8365E-05 1.5559 0.00067974 1.3536 0.00059138 436.87935758398453 88.719 0.19473 92.172 92.103 92.298 3.4525 -0.038898 0.0006343 NaN 0.96228 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 66397 4017 4678 2571 2575 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.879322 1307.61614 -0.21757 -9.5053E-05 1.3965 0.00061011 1.179 0.00051506 436.8793388524029 87.091 0.13559 90.532 90.472 90.608 3.4408 0.051068 0.00029669 NaN 0.96228 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 51614 4018 4678 2571 2575 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.879322 1307.61614 -0.33831 -0.0001478 0.93296 0.00040759 0.59465 0.00025979 436.8794228198846 88.843 0.1254 92.236 92.135 92.26 3.3931 0.025798 -0.00018215 NaN 0.96228 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 45285 4019 4678 2571 2575 -0.025367471237814243 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.879322 1307.61614 0.10834 4.7332E-05 1.2648 0.00055255 1.3731 0.00059988 437.214879079622 88.476 0.17624 92.214 92.11 92.286 3.7379 0.0035855 0.00025271 NaN 0.96228 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 49966 4020 4678 2571 2575 -0.025367471237814243 DRFHKISLL 9 Unmodified _DRFHKISLL_ 0 0 0 REV__LTR26_dup93|chr2:54044836-54045431:+|1.0611958639773291|0.0922673738619119|3.52|151.0|23|1|anti-sense REV__LTR26_dup93|chr2:54044836-54045431:+|1.0611958639773291|0.0922673738619119|3.52|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_2 3 564.8287963867188 2 564.82984 1127.64513 NaN NaN NaN NaN NaN NaN NaN 25.933 1 29.428 28.928 29.928 3.4945 0 0 0 0.39036 1 3678 3678 2.9952 0.26005 1 + 4021 30891 2572 2576 5028 5028 0.08641113496901198 DRFHLITKV 9 Unmodified _DRFHLITKV_ 0 0 0 REV__L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|103|3|anti-sense REV__L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|103|3|anti-sense MSMS UPN47_class_I_Rep_1 2 564.828369140625 2 564.82984 1127.64513 NaN NaN NaN NaN NaN NaN NaN 25.787 1 29.549 29.049 30.049 3.7624 0 0 0 0.3967 1 3594 3594 1.4819 0 1 + 4022 28604 2573 2577 5029 5029 0.08641113496855723 DRFSGRFWAWL 11 Unmodified _DRFSGRFWAWL_ 0 0 0 nc|ENSG00000167895|Q8IU68-2|TMC8;ENSG00000167895|ENST00000318430|TMC8 nc|ENSG00000167895|Q8IU68-2|TMC8 nc|ENSG00000167895|Q8IU68-2|TMC8 MSMS UPN48_class_I_Rep_1 5 480.9111633300781 3 480.910561 1439.70985 NaN NaN NaN NaN NaN NaN NaN 37.391 1 40.898 40.398 41.398 3.507 0 0 0 0.38417 1 6355 6355 0.50596 0 1 4023 4336 2574 2578 5030 5030 0.007586883029034652 DRFTTKFYQ 9 Unmodified _DRFTTKFYQ_ 0 0 0 L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|23|1|sense L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|23|1|sense L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|23|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 603.3016357421875 2 603.301113 1204.58767 -0.24044 -0.00014506 -0.060954 -3.6774E-05 -0.3014 -0.00018183 603.3009595109569 26.02 0.74556 29.368 29.126 29.872 3.3478 115 70 2 0 0 0 0.49026 1 3688 3688 1.6526 0.17072 1 126920 4024 14493 2575 2579 5031 5031 -0.006437734993369304 DRFVLCQPFHC 11 Unmodified _DRFVLCQPFHC_ 0 0 0 REV__ENST00000474908.5_1_9:35813053-35813759:-|nuORF REV__ENST00000474908.5_1_9:35813053-35813759:-|nuORF MSMS UPN48_class_I_Rep_2 6 455.5440979003906 3 455.546125 1363.61655 NaN NaN NaN NaN NaN NaN NaN 19.533 1 23.183 22.683 23.683 3.6497 0 0 0 0.38417 1 1507 1507 0.50596 0.051438 1 + 4025 22529 2576 2580 5032 5032 -0.05071695466199344 DRFYKVVFG 9 Unmodified _DRFYKVVFG_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS UPN48_class_I_Rep_3 7 565.8041381835938 2 565.803291 1129.59203 0.49213 0.00027845 -0.24712 -0.00013982 0.24501 0.00013863 565.8031443336037 67.085 0.64938 70.593 70.251 70.901 3.5077 87 46 2 0 0 0 0.36392 1 15222 15222 10.074 0 1 231270 + 4026 21213 2577 2581 5033 5033 0.032417357142321634 DRGKLKLN 8 Unmodified _DRGKLKLN_ 0 0 0 REV__L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|82|3|sense REV__L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|82|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.28753662109375 2 472.287808 942.561064 0.24587 0.00011612 -0.1028 -4.8553E-05 0.14307 6.7568E-05 472.2879333688999 89.679 0.52381 89.679 89.371 89.895 0 204 47 5 0 0 0 0.82752 1 21507 21507 0.69038 0 1 22080000 + 4027 25735 2578 2582 5034 5034 0.08748582399971383 DRIKIMKRKQ 10 Unmodified _DRIKIMKRKQ_ 0 0 0 REV__L1M4a2_dup577|chr5:69972165-69972727:-|1.3948510195069|0.027993938573205|5.64|150.0|12|2|sense REV__L1M4a2_dup577|chr5:69972165-69972727:-|1.3948510195069|0.027993938573205|5.64|150.0|12|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 439.57525634765625 3 439.271213 1314.79181 0.083165 3.6532E-05 0.21682 9.5243E-05 0.29999 0.00013177 439.27121271314473 37.433 0.33105 41.135 40.919 41.25 3.7021 65 34 2 0 0 0 0.84575 1 6388 6388 0.62683 0 1 121510 + 4028 24499 2579 2583 5035 5035 0.14700467390321137 DRILKCRTKKY 11 Unmodified _DRILKCRTKKY_ 0 0 0 REV__L1ME3B_dup1341|chr3:15774444-15774868:+|2.0693782888716994|0.0028646966568142|9.5|151.0|5|1|sense REV__L1ME3B_dup1341|chr3:15774444-15774868:+|2.0693782888716994|0.0028646966568142|9.5|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 475.27825927734375 3 475.278256 1422.81294 0.29879 0.00014201 -0.15201 -7.2247E-05 0.14678 6.976E-05 475.2781156233415 59.524 1.9757 63.01 62.024 64 3.4868 251 143 2 0 0 0 0.68024 1 13188 13188 0.50596 0.051438 1 584480 + 4029 28045 2580 2584 5036 5036 0.11844432699172103 DRKLHISF 8 Unmodified _DRKLHISF_ 0 0 0 REV__ENSG00000250374|ENST00000503032|TRIM75 REV__ENSG00000250374|ENST00000503032|TRIM75 MULTI-MSMS UPN48_class_I_Rep_1 5 508.2873229980469 2 508.287808 1014.56106 0.21117 0.00010734 -0.33525 -0.0001704 -0.12408 -6.3069E-05 508.287571502724 48.431 1.4095 51.955 51.47 52.88 3.5239 239 101 3 0 0 0 0.82752 1 9562 9562 17.113 1.8644 1 1219100 + 4030 21356 2581 2585 5037 5037 0.05436582399988765 DRKLRLQK 8 Unmodified _DRKLRLQK_ 0 0 0 REV__ENSG00000117281.16,CD160,chr1,+,I4.1,145731071,145735996|37|8.17|1|intron REV__ENSG00000117281.16,CD160,chr1,+,I4.1,145731071,145735996|37|8.17|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 528.8348999023438 2 528.835457 1055.65636 -0.16888 -8.9308E-05 -0.53854 -0.0002848 -0.70741 -0.00037411 528.8350898681108 14.136 0.29693 17.611 17.465 17.762 3.475 50 35 2 0 0 0 0.82752 1 484 484 0.69038 0 1 52651 + 4031 18630 2582 2586 5038 5038 0.13075935591018606 DRKLRLQK 8 Unmodified _DRKLRLQK_ 0 0 0 REV__ENSG00000117281.16,CD160,chr1,+,I4.1,145731071,145735996|37|8.17|1|intron REV__ENSG00000117281.16,CD160,chr1,+,I4.1,145731071,145735996|37|8.17|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 528.8352661132812 2 528.835457 1055.65636 -0.20344 -0.00010759 -0.41304 -0.00021843 -0.61649 -0.00032602 528.8350953025977 14.179 0.27438 17.566 17.487 17.761 3.3871 49 32 2 0 0 0 0.82752 1 518 518 0.69038 0 1 38767 + 4032 18630 2582 2586 5039 5039 0.13075935591018606 DRKLRLQK 8 Unmodified _DRKLRLQK_ 0 0 0 REV__ENSG00000117281.16,CD160,chr1,+,I4.1,145731071,145735996|37|8.17|1|intron REV__ENSG00000117281.16,CD160,chr1,+,I4.1,145731071,145735996|37|8.17|1|intron MULTI-MATCH UPN47_class_I_Rep_3 4 2 528.835457 1055.65636 -0.49404 -0.00026126 -0.14807 -7.8304E-05 -0.6421 -0.00033957 528.8354158021593 14.292 0.25965 17.662 17.558 17.817 3.3697 0.048656 0.00027922 NaN 0.69038 39 30 2 NaN NaN NaN NaN 0 NaN NaN 0 22309 + 4033 18630 2582 2586 0.13075935591018606 DRKSELFVM 9 Unmodified _DRKSELFVM_ 0 0 0 REV__ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|78|3|sense REV__ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|78|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.7921752929688 2 562.792066 1123.56958 0.046343 2.6082E-05 -0.075893 -4.2712E-05 -0.02955 -1.6631E-05 562.7921567763068 43.037 0.41246 46.724 46.596 47.009 3.6875 45 28 2 0 0 0 0.47197 1 8894 8894 3.5965 0.60125 1 68092 + 4034 23268 2583 2587 5040 5040 0.012737682543047413 DRKSILTIS 9 Unmodified _DRKSILTIS_ 0 0 0 REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|1|1|sense REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 516.8059692382812 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 47.357 1 51.052 50.552 51.552 3.6951 0 0 0 0.25702 1 10132 10132 13.042 0 1 + 4035 25233 2584 2588 5041 5041 0.08297414506046152 DRLEQALEL 9 Unmodified _DRLEQALEL_ 0 0 0 REV__ENSG00000044090|ENST00000265348|CUL7 REV__ENSG00000044090|ENST00000265348|CUL7 MULTI-MSMS UPN48_class_I_Rep_3 7 543.7933349609375 2 543.793121 1085.57169 0.38967 0.0002119 -0.17361 -9.441E-05 0.21606 0.00011749 543.7930878931583 50.342 0.5892 53.963 53.8 54.39 3.621 61 36 2 0 0 0 0.20317 2 10228 10228;10269 20.415 0 1 207760 + 4036 17655 2585 2589 5042;5043 5042 0.0323252026373666 DRLERVIT 8 Unmodified _DRLERVIT_ 0 0 0 REV__L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|156|3|sense REV__L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|156|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.29071044921875 2 501.290548 1000.56654 0.31107 0.00015594 0.23766 0.00011914 0.54873 0.00027507 501.29055340443256 93.484 0.41895 93.484 93.408 93.827 0 72 41 2 0 0 0 0.82752 1 22645 22645 4.3292 4.3292 1 540310 + 4037 29791 2586 2590 5044 5044 0.06628261191792717 DRLGRTAL 8 Unmodified _DRLGRTAL_ 0 0 0 ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A MULTI-MSMS UPN47_class_I_Rep_1 2 451.2891845703125 2 451.264333 900.514114 -0.39683 -0.00017908 -0.5454 -0.00024612 -0.94223 -0.0004252 451.26388722453345 26.352 0.65704 30.114 29.783 30.44 3.7624 74 59 2 0 0 0 0.82752 1 3662 3662 1.8442 0 1 75624 4038 5811 2587 2591 5045 5045 0.05987722848840349 DRLGVFTKK 9 Unmodified _DRLGVFTKK_ 0 0 0 REV__L1MC4_dup14079|chrX:45098951-45099526:-|1.5645272123503609|0.1947626207831539|3.01|151.0|8|2|sense REV__L1MC4_dup14079|chrX:45098951-45099526:-|1.5645272123503609|0.1947626207831539|3.01|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 532.3164672851562 2 532.316566 1062.61858 0.48266 0.00025693 -0.30337 -0.00016149 0.17929 9.5437E-05 532.3161472568088 110.81 0.063927 114.34 114.32 114.38 3.5271 6 5 2 0 0 0 0.49187 1 26981 26981 1.4819 0.79152 1 150150 + 4039 26812 2588 2592 5046 5046 0.0897742460556401 DRLNDIFRKTF 11 Unmodified _DRLNDIFRKTF_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-MSMS UPN46_class_I_Rep_3 1 475.5927429199219 3 475.593009 1423.7572 0.012883 6.1273E-06 -0.28908 -0.00013749 -0.2762 -0.00013136 475.5927679077283 30.848 1.0461 30.848 30.44 31.486 0 188 82 3 0 0 0 0.65186 1 5055 5055 3.0723 0 1 217120 + 4040 19396 2589 2593 5047 5047 0.06226922783207556 DRLNKVGV 8 Unmodified _DRLNKVGV_ 0 0 0 ENST00000357574.7_1_18:54426160-54446676:+|nuORF ENST00000357574.7_1_18:54426160-54446676:+|nuORF ENST00000357574.7_1_18:54426160-54446676:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 450.76611328125 2 450.766709 899.518865 -0.5496 -0.00024774 0.028041 1.264E-05 -0.52156 -0.0002351 450.7665522025698 28.107 0.87535 31.606 31.296 32.172 3.4986 153 73 3 0 0 0 0.82752 1 4468 4468 0.69038 0 1 202630 4041 6292 2590 2594 5048 5048 0.06508606991621946 DRLRIHILHV 10 Unmodified _DRLRIHILHV_ 0 0 0 ENSG00000147596|ENST00000276594|PRDM14 ENSG00000147596|ENST00000276594|PRDM14 ENSG00000147596|ENST00000276594|PRDM14 MSMS UPN47_class_I_Rep_2 3 636.3875122070312 2 636.388388 1270.76222 NaN NaN NaN NaN NaN NaN NaN 83.987 1 87.399 86.899 87.899 3.4116 0 0 0 0.53105 1 20945 20945 0.45834 0 1 4042 3482 2591 2595 5049 5049 0.1376727143649532 DRLYMTMM 8 Unmodified _DRLYMTMM_ 0 0 0 REV__L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|263|3|anti-sense REV__L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|263|3|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7343139648438 2 530.734848 1059.45514 NaN NaN NaN NaN NaN NaN NaN 18.088 1 21.652 21.152 22.152 3.5637 0 0 0 0.40625 1 1138 1138 2.3027 0 1 + 4043 29381 2592 2596 5050 5050 -0.0722058082365038 DRNKHLYN 8 Unmodified _DRNKHLYN_ 0 0 0 REV__ENST00000507536.1_1_4:55143544-55147845:+|nuORF REV__ENST00000507536.1_1_4:55143544-55147845:+|nuORF MSMS UPN48_class_I_Rep_1 5 530.2720947265625 2 530.270147 1058.52574 NaN NaN NaN NaN NaN NaN NaN 30.12 1 33.662 33.162 34.162 3.542 0 0 0 0.40643 1 4281 4281 2.0598 0 1 + 4044 19116 2593 2597 5051 5051 -0.001180801278223953 DRNKLPPLT 9 Unmodified _DRNKLPPLT_ 0 0 0 REV__ENSG00000138696|ENST00000515059|BMPR1B REV__ENSG00000138696|ENST00000515059|BMPR1B MSMS UPN48_class_I_Rep_2 6 527.3067626953125 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 99.145 1 102.92 102.42 103.42 3.7707 0 0 0 0.37692 1 23549 23549 6.2058 0 1 + 4045 19285 2594 2598 5052 5052 0.07364834225904815 DRPMWYDARWT 11 Unmodified _DRPMWYDARWT_ 0 0 0 REV__L1MD2_dup5893|chrX:19815305-19816525:-|2.128386351367791|0.0049456871413234|8.75|151.0|37|3|sense REV__L1MD2_dup5893|chrX:19815305-19816525:-|2.128386351367791|0.0049456871413234|8.75|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 499.72222900390625 3 499.562832 1495.66667 NaN NaN NaN NaN NaN NaN NaN 70.957 1 70.957 70.457 71.457 0 0 0 0 0.38417 1 16330 16330 0.40827 0.24894 1 + 4046 27415 2595 2599 5053 5053 -0.06133869536711245 DRPRCVRF 8 Unmodified _DRPRCVRF_ 0 0 0 L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|185|1|anti-sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|185|1|anti-sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|185|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.8037109375 2 524.777085 1047.53962 -0.31985 -0.00016785 3.0338 0.0015921 2.7139 0.0014242 525.2816202938656 26.33 0.11212 29.824 29.746 29.858 3.4945 12 10 2 0 0 0 0.82752 1 3795 3795 2.5775 0 1 16828 4047 14587 2596 2600 5054 5054 0.017748740996239576 DRQVIAKA 8 Unmodified _DRQVIAKA_ 0 0 0 REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 MULTI-MSMS UPN47_class_I_Rep_1 2 450.76544189453125 2 450.766709 899.518865 -0.39175 -0.00017659 -0.085425 -3.8507E-05 -0.47717 -0.00021509 450.7665539244433 27.967 0.73499 31.733 31.418 32.153 3.7662 125 59 3 0 0 0 0.82752 1 4167 4167 0.69038 0 1 239980 + 4048 18893 2597 2601 5055 5055 0.06508606991599208 DRQWLMPW 8 Unmodified _DRQWLMPW_ 0 0 0 REV__ENST00000535434.5_1_12:6978425-6978470:+|nuORF REV__ENST00000535434.5_1_12:6978425-6978470:+|nuORF MSMS UPN47_class_I_Rep_2 3 566.2747192382812 2 566.273844 1130.53313 NaN NaN NaN NaN NaN NaN NaN 39.173 1 42.552 42.052 43.052 3.3785 0 0 0 0.40738 1 7664 7664 0.79363 0 1 + 4049 22888 2598 2602 5056 5056 -0.0269106385176201 DRRDCFHH 8 Unmodified _DRRDCFHH_ 0 0 0 MLT2B4_dup921|chr3:167673053-167673577:+|1.1058097007017769|0.2704209323627905|2.03|150.0|9|2|sense MLT2B4_dup921|chr3:167673053-167673577:+|1.1058097007017769|0.2704209323627905|2.03|150.0|9|2|sense MLT2B4_dup921|chr3:167673053-167673577:+|1.1058097007017769|0.2704209323627905|2.03|150.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 543.2379760742188 2 543.238324 1084.46209 NaN NaN NaN NaN NaN NaN NaN 115.88 1 119.38 118.88 119.88 3.4965 0 0 0 0.40625 1 28271 28271 2.3027 0 1 4050 16515 2599 2603 5057 5057 -0.07675763836573424 DRRPSLSP 8 Unmodified _DRRPSLSP_ 0 0 0 ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C MULTI-SECPEP UPN48_class_I_Rep_3 7 464.75439453125 2 464.253966 926.493378 0.23902 0.00011097 -0.76399 -0.00035469 -0.52497 -0.00024372 464.2535971694972 75.264 0.11017 78.83 78.765 78.875 3.5659 13 9 2 0 0 0 0.72333 1 17679 17679 4.3292 4.3292 1 57356 4051 5065 2600 2604 5058 5058 0.027191324691784757 DRRPSLSP 8 Unmodified _DRRPSLSP_ 0 0 0 ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C MULTI-MATCH UPN48_class_I_Rep_1 5 2 464.253966 926.493378 0.09378 4.3538E-05 -0.56298 -0.00026136 -0.4692 -0.00021783 464.25376346131884 75.132 0.18237 78.622 78.555 78.737 3.49 -0.10191 1.5206E-06 NaN 4.3292 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 76623 4052 5065 2600 2604 0.027191324691784757 DRRPSLSP 8 Unmodified _DRRPSLSP_ 0 0 0 ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C ENSG00000184828|ENST00000590800|ZBTB7C MULTI-MATCH UPN48_class_I_Rep_2 6 2 464.253966 926.493378 0.18372 8.5294E-05 -0.026963 -1.2518E-05 0.15676 7.2776E-05 464.25377142539287 75.13 0.08902 78.72 78.675 78.765 3.59 -0.004103 0.00049921 NaN 4.3292 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 70730 4053 5065 2600 2604 0.027191324691784757 DRRRLRNY 8 Unmodified _DRRRLRNY_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|7|1|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|7|1|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 574.7193603515625 2 574.823412 1147.63227 NaN NaN NaN NaN NaN NaN NaN 76.975 1 80.39 79.89 80.89 3.4149 0 0 0 0.40746 1 19073 19073 0.69038 0 1 4054 8085 2601 2605 5059 5059 0.06436095157368982 DRRSIVLD 8 Unmodified _DRRSIVLD_ 0 0 0 REV__ENST00000281146.9_1_4:130015073-130023805:+|nuORF REV__ENST00000281146.9_1_4:130015073-130023805:+|nuORF MSMS UPN47_class_I_Rep_1 2 487.27459716796875 2 487.274898 972.535243 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.59 114.09 115.09 3.5835 0 0 0 0.40746 1 27372 27372 0.69038 0 1 + 4055 21622 2602 2606 5060 5060 0.04787688157693992 DRRSIVLD 8 Unmodified _DRRSIVLD_ 0 0 0 REV__ENST00000281146.9_1_4:130015073-130023805:+|nuORF REV__ENST00000281146.9_1_4:130015073-130023805:+|nuORF MSMS UPN47_class_I_Rep_3 4 487.27484130859375 2 487.274898 972.535243 NaN NaN NaN NaN NaN NaN NaN 111.48 1 115.01 114.51 115.51 3.5207 0 0 0 0.40746 1 27367 27367 0.69038 0 1 + 4056 21622 2602 2606 5061 5061 0.04787688157693992 DRSRRRLR 8 Unmodified _DRSRRRLR_ 0 0 0 ENSG00000185028|ENST00000328278|LRRC14B ENSG00000185028|ENST00000328278|LRRC14B ENSG00000185028|ENST00000328278|LRRC14B MSMS UPN48_class_I_Rep_3 7 557.8366088867188 2 557.836854 1113.65916 NaN NaN NaN NaN NaN NaN NaN 72.391 1 75.918 75.418 76.418 3.5266 0 0 0 0.40746 1 16869 16869 0.69038 0 1 4057 5080 2603 2607 5062 5062 0.1068720376854344 DRSYAWLLSW 10 Unmodified _DRSYAWLLSW_ 0 0 0 ENST00000471576.5_1_2:219525794-219526031:+|nuORF;ENSG00000074582|ENST00000359273|BCS1L ENST00000471576.5_1_2:219525794-219526031:+|nuORF ENST00000471576.5_1_2:219525794-219526031:+|nuORF MSMS UPN48_class_I_Rep_3 7 432.88519287109375 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 100.81 1 104.63 104.13 105.13 3.8153 0 0 0 0.53105 1 23854 23854 1.5923 0.89462 1 4058 1130 2604 2608 5063 5063 -0.006117980909493781 DRTLHHECV 9 Unmodified _DRTLHHECV_ 0 0 0 REV__L1ME1_dup5990|chr3:71056029-71056197:+|1.2177401339509797|0.0147610507461912|6.37|151.0|11|2|anti-sense REV__L1ME1_dup5990|chr3:71056029-71056197:+|1.2177401339509797|0.0147610507461912|6.37|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2618408203125 2 555.261465 1108.50838 NaN NaN NaN NaN NaN NaN NaN 62.898 1 66.257 65.757 66.757 3.3595 0 0 0 0.36505 1 14850 14850 7.2892 0 1 + 4059 27786 2605 2609 5064 5064 -0.041537437251463416 DRTLIQHPSPC 11 Unmodified _DRTLIQHPSPC_ 0 0 0 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron MSMS UPN46_class_I_Rep_3 1 633.8148193359375 2 633.816604 1265.61866 NaN NaN NaN NaN NaN NaN NaN 65.767 1 65.767 65.267 66.267 0 0 0 0 0.38417 1 14882 14882 0.96228 0.43751 1 4060 1070 2606 2610 5065 5065 -0.0035294345673264615 DRVKRKQPVK 10 Unmodified _DRVKRKQPVK_ 0 0 0 REV__L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|30|3|sense REV__L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|30|3|sense MSMS UPN47_class_I_Rep_1 2 627.3826904296875 2 627.39367 1252.77279 NaN NaN NaN NaN NaN NaN NaN 103.78 1 107.55 107.05 108.05 3.7627 0 0 0 0.53105 1 25513 25513 3.5965 0 1 + 4061 25411 2607 2611 5066 5066 0.1565125409092616 DRVLVRVE 8 Unmodified _DRVLVRVE_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS UPN47_class_I_Rep_2 3 493.2927551269531 2 493.293091 984.571629 -0.11785 -5.8134E-05 -0.47726 -0.00023543 -0.59511 -0.00029356 493.2927741868467 13.176 0.30806 16.564 16.464 16.772 3.388 49 31 3 0 0 0 0.82752 1 260 260 4.3292 0 1 95133 + 4062 21019 2608 2612 5067 5067 0.07872565054424285 DRVRLYGLQ 9 Unmodified _DRVRLYGLQ_ 0 0 0 REV__L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|303|2|anti-sense REV__L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|303|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.3170776367188 2 560.317097 1118.61964 -0.00013252 -7.4254E-08 0.19871 0.00011134 0.19858 0.00011127 560.3171409786208 41.161 0.54937 44.833 44.694 45.243 3.6719 52 40 2 0 0 0 0.48846 1 8298 8298 1.8442 0 1 118290 + 4063 29614 2609 2613 5068 5068 0.06507638974471774 DRVRPSLKNK 10 Unmodified _DRVRPSLKNK_ 0 0 0 AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 606.3614501953125 2 606.862203 1211.70985 0.63459 0.00038511 1.578 0.00095761 2.2125 0.0013427 606.8628151159835 109.34 0.38045 112.87 112.73 113.11 3.5307 65 50 2 0 0 0 0.84575 1 26633 26633 2.9952 0.26005 1 3113500 4064 111 2610 2614 5069 5069 0.11246688302890107 DRVRPSLKNK 10 Unmodified _DRVRPSLKNK_ 0 0 0 AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 606.862203 1211.70985 0.50975 0.00030935 1.0885 0.00066059 1.5983 0.00096993 606.8625776804452 109.28 0.10375 112.81 112.75 112.85 3.5347 -0.020539 -0.00078884 NaN 2.9952 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2479600 4065 111 2610 2614 0.11246688302890107 DRVRPSLKNK 10 Unmodified _DRVRPSLKNK_ 0 0 0 AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 606.862203 1211.70985 0.48842 0.0002964 3.1472 0.0019099 3.6356 0.0022063 607.3660091579077 109.25 0.12598 112.92 112.88 113 3.6715 0.093072 0.0017098 NaN 2.9952 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1483700 4066 111 2610 2614 0.11246688302890107 DRVRPSLKNK 10 Unmodified _DRVRPSLKNK_ 0 0 0 AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense AluJo_dup44664|chr10:87872995-87873293:+|1.1214102927612022|0.1678501865494184|2.74|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 606.862203 1211.70985 0.55225 0.00033514 2.225 0.0013503 2.7772 0.0016854 606.8627024879186 109.29 0.080521 112.97 112.93 113.01 3.6751 0.13919 0.0005905 NaN 2.9952 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 936740 4067 111 2610 2614 0.11246688302890107 DRWIPFFW 8 Unmodified _DRWIPFFW_ 0 0 0 L1MA2_dup6756|chr16:29150259-29150792:-|1.230337939140386|0.0215694779216954|5.83|151.0|20|1|anti-sense L1MA2_dup6756|chr16:29150259-29150792:-|1.230337939140386|0.0215694779216954|5.83|151.0|20|1|anti-sense L1MA2_dup6756|chr16:29150259-29150792:-|1.230337939140386|0.0215694779216954|5.83|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 583.7931518554688 2 583.792727 1165.5709 NaN NaN NaN NaN NaN NaN NaN 69.94 1 73.145 72.645 73.645 3.2044 0 0 0 0.40738 1 17082 17082 0.79363 0 1 4068 9448 2611 2615 5070 5070 -0.005262295946295126 DRWMDCMW 8 Unmodified _DRWMDCMW_ 0 0 0 REV__ENSG00000235718|ENST00000619721|MFRP REV__ENSG00000235718|ENST00000619721|MFRP MSMS UPN48_class_I_Rep_2 6 571.6994018554688 2 571.714447 1141.41434 NaN NaN NaN NaN NaN NaN NaN 116.03 1 119.69 119.19 120.19 3.6607 0 0 0 0.40625 1 27785 27785 2.3027 0.24298 1 + 4069 21308 2612 2616 5071 5071 -0.15070922143263488 DRWREERNREH 11 Unmodified _DRWREERNREH_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS UPN46_class_I_Rep_3 1 528.257080078125 3 528.257571 1581.75088 -0.18998 -0.00010036 -0.74724 -0.00039474 -0.93723 -0.0004951 528.2574634172912 18.109 0.10724 18.109 18.047 18.154 0 21 12 2 0 0 0 0.68024 1 1525 1525 0.50596 0 1 44528 4070 2285 2613 2617 5072 5072 -0.01672202395570821 DRWVSPRTPE 10 Unmodified _DRWVSPRTPE_ 0 0 0 REV__ENST00000264785.11_1_4:10105608-10108140:-|nuORF REV__ENST00000264785.11_1_4:10105608-10108140:-|nuORF MSMS UPN47_class_I_Rep_2 3 621.8140258789062 2 621.814919 1241.61528 NaN NaN NaN NaN NaN NaN NaN 67.221 1 70.485 69.985 70.985 3.2636 0 0 0 0.53105 1 16198 16198 1.1933 0.23107 1 + 4071 21582 2614 2618 5073 5073 0.004141297608839523 DRYRYILAM 9 Unmodified _DRYRYILAM_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|34|2|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|34|2|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 600.8130493164062 2 600.813333 1199.61211 NaN NaN NaN NaN NaN NaN NaN 78.38 1 82.002 81.502 82.502 3.6216 0 0 0 0.40038 1 18551 18551 0.6015 0 1 4072 11506 2615 2619 5074 5074 0.020291633825308963 DRYTQIEK 8 Unmodified _DRYTQIEK_ 0 0 0 REV__L1MEg_dup2612|chr3:11394435-11395658:+|3.510766452214805|0.0199525761435356|7.46|151.0|5|1|sense REV__L1MEg_dup2612|chr3:11394435-11395658:+|3.510766452214805|0.0199525761435356|7.46|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 526.774658203125 2 526.772188 1051.52982 NaN NaN NaN NaN NaN NaN NaN 27.662 1 31.004 30.504 31.504 3.3422 0 0 0 0.40472 1 4231 4231 4.3292 0 1 + 4073 28742 2616 2620 5075 5075 0.006119645752505676 DSAFASFVFG 10 Unmodified _DSAFASFVFG_ 0 0 0 REV__ENSG00000174326|ENST00000574600|SLC16A11 REV__ENSG00000174326|ENST00000574600|SLC16A11 MULTI-MSMS UPN48_class_I_Rep_1 5 524.2418212890625 2 524.242732 1046.47091 0.31251 0.00016383 -0.65542 -0.0003436 -0.34291 -0.00017977 524.242278080323 81.164 0.38098 84.726 84.51 84.891 3.5624 57 45 2 0 0 0 0.47413 1 19350 19350 13.906 5.7505 1 95780 + 4074 20516 2617 2621 5076 5076 -0.0504651171909245 DSAFASFVFG 10 Unmodified _DSAFASFVFG_ 0 0 0 REV__ENSG00000174326|ENST00000574600|SLC16A11 REV__ENSG00000174326|ENST00000574600|SLC16A11 MULTI-MSMS UPN48_class_I_Rep_2 6 524.2432250976562 2 524.242732 1046.47091 0.38475 0.0002017 -0.75523 -0.00039592 -0.37047 -0.00019422 524.2422722519202 81.154 0.13291 84.81 84.776 84.909 3.6567 21 16 2 0 0 0 0.53654 1 19258 19258 7.2892 0.93513 1 102650 + 4075 20516 2617 2621 5077 5077 -0.0504651171909245 DSAFASFVFG 10 Unmodified _DSAFASFVFG_ 0 0 0 REV__ENSG00000174326|ENST00000574600|SLC16A11 REV__ENSG00000174326|ENST00000574600|SLC16A11 MULTI-MSMS UPN48_class_I_Rep_3 7 524.241455078125 2 524.242732 1046.47091 0.46316 0.00024281 -0.82075 -0.00043027 -0.35759 -0.00018746 524.2422405628256 81.046 0.49413 84.709 84.487 84.981 3.6635 70 63 2 0 0 0 0.33585 3 19194 19150;19194;19224 25.399 17.244 1 173800 + 4076 20516 2617 2621 5078;5079;5080 5079 -0.0504651171909245 DSCCWYPYV 9 Unmodified _DSCCWYPYV_ 0 0 0 ENSG00000169684|ENST00000299565|CHRNA5 ENSG00000169684|ENST00000299565|CHRNA5 ENSG00000169684|ENST00000299565|CHRNA5 MSMS UPN47_class_I_Rep_2 3 568.2141723632812 2 568.214803 1134.41505 NaN NaN NaN NaN NaN NaN NaN 116.14 1 119.63 119.13 120.13 3.4965 0 0 0 0.4007 1 28343 28343 0.52476 0 1 4077 4432 2618 2622 5081 5081 -0.1467780422258329 DSCDHMCGNFS 11 Unmodified _DSCDHMCGNFS_ 0 0 0 MER21A_dup836|chr6:166986045-166986571:-|1.5505769220672694|0.24465383591558|2.66|151.0|20|2|anti-sense MER21A_dup836|chr6:166986045-166986571:-|1.5505769220672694|0.24465383591558|2.66|151.0|20|2|anti-sense MER21A_dup836|chr6:166986045-166986571:-|1.5505769220672694|0.24465383591558|2.66|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 405.7978515625 3 405.800302 1214.37908 NaN NaN NaN NaN NaN NaN NaN 24.735 1 28.086 27.586 28.586 3.3509 0 0 0 0.38417 1 3365 3365 0.08335 0.08335 1 4078 15859 2619 2623 5082 5082 -0.21953629461722812 DSCHTCTQLHC 11 Unmodified _DSCHTCTQLHC_ 0 0 0 L1MA6_dup1838|chr5:116333920-116334540:+|2.0739121326654084|0.0134750199540007|7.27|151.0|5|2|sense L1MA6_dup1838|chr5:116333920-116334540:+|2.0739121326654084|0.0134750199540007|7.27|151.0|5|2|sense L1MA6_dup1838|chr5:116333920-116334540:+|2.0739121326654084|0.0134750199540007|7.27|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 624.236328125 2 624.233732 1246.45291 NaN NaN NaN NaN NaN NaN NaN 34.127 1 37.807 37.307 38.307 3.6797 0 0 0 0.38417 1 5386 5386 1.3295 0 1 4079 9962 2620 2624 5083 5083 -0.16045661299403946 DSDCSCCT 8 Unmodified _DSDCSCCT_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 417.1081237792969 2 417.109146 832.203739 0.085771 3.5776E-05 -1.6952 -0.00070708 -1.6094 -0.0006713 417.10835394217185 95.896 0.062546 95.896 95.859 95.922 0 10 7 2 0 0 0 0.82752 1 23301 23301 0 0 1 164090 4080 7728 2621 2625 5084 5084 -0.21907424255982733 DSDCSCCT 8 Unmodified _DSDCSCCT_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MSMS UPN46_class_I_Rep_3 1 417.1081848144531 2 417.109146 832.203739 NaN NaN NaN NaN NaN NaN NaN 103.32 1 103.32 102.82 103.82 0 0 0 0 0.40798 1 25214 25214 0 0 1 4081 7728 2621 2625 5085 5085 -0.21907424255982733 DSDCSCCT 8 Unmodified _DSDCSCCT_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MSMS UPN47_class_I_Rep_1 2 417.1083984375 2 417.109146 832.203739 NaN NaN NaN NaN NaN NaN NaN 92.171 1 95.891 95.391 96.391 3.7209 0 0 0 0.40798 1 22979 22979 0 0 1 4082 7728 2621 2625 5086 5086 -0.21907424255982733 DSDCSCCT 8 Unmodified _DSDCSCCT_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MSMS UPN47_class_I_Rep_1 2 417.1080322265625 2 417.109146 832.203739 NaN NaN NaN NaN NaN NaN NaN 92.434 1 96.155 95.655 96.655 3.7209 0 0 0 0.40798 1 23034 23034 0 0 1 4083 7728 2621 2625 5087 5087 -0.21907424255982733 DSDCSCCT 8 Unmodified _DSDCSCCT_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MSMS UPN48_class_I_Rep_3 7 417.1086120605469 2 417.109146 832.203739 NaN NaN NaN NaN NaN NaN NaN 92.003 1 95.866 95.366 96.366 3.8634 0 0 0 0.40798 1 21819 21819 0 0 1 4084 7728 2621 2625 5088 5088 -0.21907424255982733 DSDCSCCT 8 Unmodified _DSDCSCCT_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 417.109146 832.203739 0.082161 3.427E-05 -2.3343 -0.00097366 -2.2521 -0.00093939 417.10828081500483 91.995 0.078888 95.758 95.697 95.776 3.7629 -0.069367 -0.00019892 NaN 0 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 264390 4085 7728 2621 2625 -0.21907424255982733 DSDCSCCTRC 10 Unmodified _DSDCSCCTRC_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MSMS UPN46_class_I_Rep_3 1 546.661376953125 2 546.664294 1091.31403 NaN NaN NaN NaN NaN NaN NaN 103.82 1 103.82 103.32 104.32 0 0 0 0 0.53105 1 25334 25334 1.6526 0.85899 1 4086 7728 2622 2626 5089 5089 -0.2279694725925765 DSDCSCCTRC 10 Unmodified _DSDCSCCTRC_ 0 0 0 HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense;ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|61|3|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|23|2|sense MSMS UPN47_class_I_Rep_1 2 546.6621704101562 2 546.664294 1091.31403 NaN NaN NaN NaN NaN NaN NaN 99.698 1 103.49 102.99 103.99 3.7942 0 0 0 0.53105 1 24644 24644 1.6526 0.17072 1 4087 7728 2622 2626 5090 5090 -0.2279694725925765 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_1 2 572.728271484375 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.38 1 79.795 79.295 80.295 3.4149 0 0 0 0.37476 1 18899 18899 6.7232 0.51738 1 4088 925 2623 2627 5091 5091 -0.1263112954384269 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_1 2 572.7269287109375 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.587 1 80.002 79.502 80.502 3.4149 0 0 0 0.15455 1 18961 18961 19.257 11.968 1 4089 925 2623 2627 5092 5092 -0.1263112954384269 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_1 2 572.7269287109375 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.748 1 80.163 79.663 80.663 3.4149 0 0 0 0.37476 1 19007 19007 6.7232 3.1267 1 4090 925 2623 2627 5093 5093 -0.1263112954384269 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_2 3 572.728759765625 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.427 1 79.748 79.248 80.248 3.3216 0 0 0 0.38639 1 18917 18917 3.9444 1.2092 1 4091 925 2623 2627 5094 5094 -0.1263112954384269 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_2 3 572.7271118164062 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.512 1 79.833 79.333 80.333 3.3216 0 0 0 0.31276 1 18943 18943 10.074 3.8681 1 4092 925 2623 2627 5095 5095 -0.1263112954384269 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_2 3 572.7277221679688 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.633 1 79.964 79.464 80.464 3.3315 0 0 0 0.31276 1 18976 18976 10.074 2.465 1 4093 925 2623 2627 5096 5096 -0.1263112954384269 DSDFFTSYY 9 Unmodified _DSDFFTSYY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_3 4 572.7272338867188 2 572.727112 1143.43967 NaN NaN NaN NaN NaN NaN NaN 76.635 1 79.904 79.404 80.404 3.269 0 0 0 0.2408 1 19061 19061 13.906 7.7003 1 4094 925 2623 2627 5097 5097 -0.1263112954384269 DSDGSFFLY 9 Unmodified _DSDGSFFLY_ 0 0 0 nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3 nc|ENSG00000211893|P01859-1|IGHG2 nc|ENSG00000211893|P01859-1|IGHG2 MULTI-SECPEP UPN47_class_I_Rep_2 3 525.2793579101562 2 525.724372 1049.43419 0.16581 8.7168E-05 0.11536 6.065E-05 0.28117 0.00014782 525.7245364649572 80.565 0.11012 83.935 83.911 84.021 3.3694 18 15 2 0 0 0 0.026395 1 20056 20056 50.855 16.668 1 132370 4095 16819 2624 2628 5098 5098 -0.08854808335649977 DSDKVGVFY 9 Unmodified _DSDKVGVFY_ 0 0 0 nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 MULTI-MSMS UPN47_class_I_Rep_1 2 515.247802734375 2 515.248015 1028.48148 0.0707 3.6428E-05 -0.082215 -4.2361E-05 -0.011516 -5.9334E-06 515.2478871620144 48.376 0.59121 52.058 51.739 52.33 3.6819 59 34 2 0 0 0 0.066633 2 10373 10373;10417 41.84 12.758 1 121990 4096 2210 2625 2629 5099;5100 5099 -0.03162529064638875 DSDKVGVFY 9 Unmodified _DSDKVGVFY_ 0 0 0 nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 MULTI-MSMS UPN47_class_I_Rep_2 3 515.2488403320312 2 515.248015 1028.48148 0.022244 1.1461E-05 0.072571 3.7392E-05 0.094815 4.8853E-05 515.2480245129291 48.617 0.60649 51.963 51.662 52.269 3.3465 39 31 2 0 0 0 0.062142 3 10534 10486;10534;10577 43.772 9.67 1 148390 4097 2210 2625 2629 5101;5102;5103 5102 -0.03162529064638875 DSDKVGVFY 9 Unmodified _DSDKVGVFY_ 0 0 0 nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 nc|ENSG00000117115|Q9Y2J8-2|PADI2 MULTI-MSMS UPN47_class_I_Rep_3 4 515.2483520507812 2 515.248015 1028.48148 0.25329 0.00013051 0.002458 1.2665E-06 0.25575 0.00013178 515.2478513131274 48.75 0.62172 51.984 51.628 52.249 3.2345 53 31 2 0 0 0 0.10568 3 10645 10586;10645;10700 32.786 15.847 1 108050 4098 2210 2625 2629 5104;5105;5106 5105 -0.03162529064638875 DSDPFSSFY 9 Unmodified _DSDPFSSFY_ 0 0 0 ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5 ENST00000496688.1_1_9:123589031-123593637:-|nuORF ENST00000496688.1_1_9:123589031-123593637:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 532.7145385742188 2 532.714005 1063.41346 0.37902 0.00020191 -0.0147 -7.8311E-06 0.36432 0.00019408 532.7139419540587 77.732 0.48289 81.161 80.885 81.368 3.4289 83 46 2 0 0 0 0.061943 3 19262 19262;19297;19343 43.858 32.218 1 163730 4099 1408 2626 2630 5107;5108;5109 5107 -0.11571398715318537 DSDPFSSFY 9 Unmodified _DSDPFSSFY_ 0 0 0 ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5 ENST00000496688.1_1_9:123589031-123593637:-|nuORF ENST00000496688.1_1_9:123589031-123593637:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 532.7144775390625 2 532.714005 1063.41346 0.34306 0.00018275 0.21347 0.00011372 0.55654 0.00029647 532.7141082524234 77.829 0.53653 81.171 80.947 81.483 3.3428 111 56 3 0 0 0 0.1249 2 19328 19295;19328 29.082 29.082 1 151930 4100 1408 2626 2630 5110;5111 5111 -0.11571398715318537 DSDPFSSFY 9 Unmodified _DSDPFSSFY_ 0 0 0 ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5 ENST00000496688.1_1_9:123589031-123593637:-|nuORF ENST00000496688.1_1_9:123589031-123593637:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 532.7142944335938 2 532.714005 1063.41346 0.42056 0.00022404 -0.10688 -5.6934E-05 0.31368 0.0001671 532.7139206534766 77.869 0.59244 81.15 80.851 81.444 3.2816 101 64 2 0 0 0 0.061943 1 19383 19383 43.858 43.858 1 150040 4101 1408 2626 2630 5112 5112 -0.11571398715318537 DSDTSEYT 8 Unmodified _DSDTSEYT_ 0 0 0 L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|9|1|sense L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|9|1|sense L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 459.1717224121094 2 459.17217 916.329786 NaN NaN NaN NaN NaN NaN NaN 29.181 1 29.181 28.681 29.681 0 0 0 0 0.40746 1 4584 4584 0.69038 0 1 4102 11639 2627 2631 5113 5113 -0.13172554883033172 DSDVIHYF 8 Unmodified _DSDVIHYF_ 0 0 0 REV__ENSG00000108055|ENST00000361804|SMC3 REV__ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS UPN46_class_I_Rep_3 1 498.2271423339844 2 498.227082 994.439611 0.22791 0.00011355 -0.028194 -1.4047E-05 0.19971 9.9503E-05 498.2270670212096 58.906 0.43309 58.906 58.706 59.139 0 75 48 2 0 0 0 0.82752 1 12998 12998 52.693 5.7722 1 209330 + 4103 18371 2628 2632 5114 5114 -0.05783084753181811 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 437.2572326660156 3 436.880167 1307.61867 0.15124 6.6076E-05 -1.0517 -0.00045949 -0.9005 -0.00039341 436.8792251607836 92.089 0.16483 92.089 91.968 92.133 0 26 19 2 0 0 0 0.84575 1 22277 22277 0.69767 0.69767 1 69725 4104 12857 2629 2633 5115 5115 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 437.2744445800781 3 436.880167 1307.61867 0.1507 6.5839E-05 -0.60879 -0.00026597 -0.45809 -0.00020013 436.87930237752767 98.38 0.1916 102.17 102.03 102.22 3.7926 38 24 2 0 0 0 0.84575 1 24348 24348 0.15932 0 1 61589 4105 12857 2629 2633 5116 5116 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 437.2571716308594 3 436.880167 1307.61867 0.13247 5.7873E-05 -0.51381 -0.00022447 -0.38134 -0.0001666 436.879102323544 91.156 0.17012 94.861 94.749 94.919 3.7053 33 22 2 0 0 0 0.84575 1 22770 22770 0.69767 0.42865 1 41650 4106 12857 2629 2633 5117 5117 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 437.2571716308594 3 436.880167 1307.61867 0.13284 5.8035E-05 -1.1824 -0.00051658 -1.0496 -0.00045854 436.8790111742452 91.247 0.064026 94.953 94.899 94.963 3.7053 12 8 2 0 0 0 0.84575 1 22770 22770 0.69767 0.42865 1 64897 4107 12857 2629 2633 5118 5118 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 437.257080078125 3 436.880167 1307.61867 -0.043812 -1.9141E-05 -0.71021 -0.00031028 -0.75403 -0.00032942 436.8792237001819 90.429 0.28581 94.055 93.826 94.112 3.626 65 38 2 0 0 0 0.84575 1 21704 21704 0.69767 0.24315 1 63928 4108 12857 2629 2633 5119 5119 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.880167 1307.61867 -0.20454 -8.9358E-05 -0.3078 -0.00013447 -0.51233 -0.00022383 436.87938549337275 88.562 0.34525 92.014 91.788 92.134 3.4525 -0.0036736 0.00024276 NaN 0.69767 71 47 2 NaN NaN NaN NaN 0 NaN NaN 0 42241 4109 12857 2629 2633 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.880167 1307.61867 -0.33806 -0.00014769 -0.16262 -7.1044E-05 -0.50068 -0.00021874 436.87945739287164 88.628 0.20239 92.021 91.912 92.115 3.3931 0.0029188 0.00043304 NaN 0.69767 35 24 2 NaN NaN NaN NaN 0 NaN NaN 0 59946 4110 12857 2629 2633 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.880167 1307.61867 0.10828 4.7303E-05 -0.35686 -0.00015591 -0.24859 -0.0001086 437.21505418826115 88.314 0.16689 92.042 91.969 92.136 3.7279 0.024101 0.00017845 NaN 0.69767 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 71992 4111 12857 2629 2633 -0.022832667284092167 DSECKRMRQR 10 Unmodified _DSECKRMRQR_ 0 0 0 L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense L1ME4a_dup17423|chr9:293190-293458:-|2.133765820734171|0.0149354966798469|7.16|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.880167 1307.61867 0.15165 6.6253E-05 -0.52172 -0.00022793 -0.37007 -0.00016167 437.214895904022 90.884 0.099327 94.731 94.665 94.764 3.847 -0.11061 0.00030752 NaN 0.69767 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 59161 4112 12857 2629 2633 -0.022832667284092167 DSELQKFY 8 Unmodified _DSELQKFY_ 0 0 0 REV__ENST00000471031.1_1_3:113653357-113655330:+|nuORF REV__ENST00000471031.1_1_3:113653357-113655330:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 515.2474975585938 2 515.248015 1028.48148 0.0707 3.6428E-05 -0.082215 -4.2361E-05 -0.011516 -5.9334E-06 515.2478871620144 48.376 0.59121 52.058 51.739 52.33 3.6819 59 34 2 0 0 0 0.82752 1 10466 10466 26.884 4.1474 1 121990 + 4113 20637 2630 2634 5120 5120 -0.03162529064661612 DSELQKFY 8 Unmodified _DSELQKFY_ 0 0 0 REV__ENST00000471031.1_1_3:113653357-113655330:+|nuORF REV__ENST00000471031.1_1_3:113653357-113655330:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 515.2471313476562 2 515.248015 1028.48148 0.25329 0.00013051 0.002458 1.2665E-06 0.25575 0.00013178 515.2478513131274 48.75 0.62172 51.984 51.628 52.249 3.2345 53 31 2 0 0 0 0.82752 1 10577 10577 21.747 21.747 1 108050 + 4114 20637 2630 2634 5121 5121 -0.03162529064661612 DSELSSQWSY 10 Unmodified _DSELSSQWSY_ 0 0 0 REV__MER90a_dup85|chr2:23782117-23782380:+|1.1072272041295146|0.1025765687631222|3.43|151.0|12|3|sense REV__MER90a_dup85|chr2:23782117-23782380:+|1.1072272041295146|0.1025765687631222|3.43|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 601.2537231445312 2 601.254025 1200.4935 NaN NaN NaN NaN NaN NaN NaN 26.56 1 30.055 29.555 30.555 3.4945 0 0 0 0.53105 1 3862 3862 1.4819 0.15237 1 + 4115 31576 2631 2635 5122 5122 -0.09872957112133918 DSFFNSAVQK 10 Unmodified _DSFFNSAVQK_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST;ENSG00000244038|ENST00000602624|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS UPN48_class_I_Rep_1 5 571.8353881835938 2 571.77747 1141.54039 NaN NaN NaN NaN NaN NaN NaN 44.688 1 48.201 47.701 48.701 3.5132 0 0 0 0.53105 1 8535 8535 2.7352 0.43246 1 4116 16836 2632 2636 5123 5123 -0.024720527703493644 DSFFNSAVQK 10 Unmodified _DSFFNSAVQK_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST;ENSG00000244038|ENST00000602624|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS UPN48_class_I_Rep_2 6 571.7771606445312 2 571.77747 1141.54039 NaN NaN NaN NaN NaN NaN NaN 44.615 1 48.377 47.877 48.877 3.7617 0 0 0 0.53105 1 8523 8523 12.175 6.4429 1 4117 16836 2632 2636 5124 5124 -0.024720527703493644 DSFFNSAVQK 10 Unmodified _DSFFNSAVQK_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST;ENSG00000244038|ENST00000602624|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS UPN48_class_I_Rep_3 7 571.778076171875 2 571.77747 1141.54039 NaN NaN NaN NaN NaN NaN NaN 44.82 1 48.457 47.957 48.957 3.6372 0 0 0 0.53105 1 8511 8511 4.1895 1.8868 1 4118 16836 2632 2636 5125 5125 -0.024720527703493644 DSFFNSAVQK 10 Unmodified _DSFFNSAVQK_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST;ENSG00000244038|ENST00000602624|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS UPN48_class_I_Rep_3 7 571.2877197265625 2 571.77747 1141.54039 NaN NaN NaN NaN NaN NaN NaN 44.92 1 48.558 48.058 49.058 3.6372 0 0 0 0.53105 1 8542 8542 2.4985 0.65425 1 4119 16836 2632 2636 5126 5126 -0.024720527703493644 DSFFNTEEES 10 Unmodified _DSFFNTEEES_ 0 0 0 REV__L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|105|3|sense REV__L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|105|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 602.736083984375 2 602.735665 1203.45678 0.44055 0.00026554 0.31683 0.00019097 0.75738 0.0004565 602.7357859734191 30.728 0.55847 34.443 34.205 34.764 3.7146 125 69 2 0 0 0 0.56333 2 4473 4473;4533 1.4819 0.95714 1 151430 + 4120 29379 2633 2637 5127;5128 5127 -0.13681253728691445 DSFQEVILR 9 Unmodified _DSFQEVILR_ 0 0 0 ENSG00000118620|ENST00000261560|ZNF430;ENSG00000196350|ENST00000601693|ZNF729 ENSG00000118620|ENST00000261560|ZNF430 ENSG00000118620|ENST00000261560|ZNF430 MSMS UPN48_class_I_Rep_1 5 553.7953491210938 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 56.714 1 60.216 59.716 60.716 3.5014 0 0 0 0.10422 1 12228 12228 23.801 4.3621 1 4121 2257 2634 2638 5129 5129 0.028208241263882883 DSFSALQVLLR 11 Unmodified _DSFSALQVLLR_ 0 0 0 ENST00000541916.5_1_13:49649476-49688811:+|nuORF ENST00000541916.5_1_13:49649476-49688811:+|nuORF ENST00000541916.5_1_13:49649476-49688811:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 624.8514404296875 2 624.85097 1247.68739 0.45051 0.0002815 -0.33997 -0.00021243 0.11054 6.9073E-05 625.3519431905131 81.398 0.5708 84.96 84.803 85.374 3.5624 88 66 2 0 0 0 0.17295 2 19446 19413;19446 41.347 19.757 1 121910 4122 7356 2635 2639 5130;5131 5131 0.07345044114595112 DSFSALQVLLR 11 Unmodified _DSFSALQVLLR_ 0 0 0 ENST00000541916.5_1_13:49649476-49688811:+|nuORF ENST00000541916.5_1_13:49649476-49688811:+|nuORF ENST00000541916.5_1_13:49649476-49688811:+|nuORF MSMS UPN48_class_I_Rep_1 5 624.8519287109375 2 624.85097 1247.68739 NaN NaN NaN NaN NaN NaN NaN 81.287 1 84.849 84.349 85.349 3.5624 0 0 0 0.38417 1 19379 19379 6.6304 2.1015 1 4123 7356 2635 2639 5132 5132 0.07345044114595112 DSGCRTAGIAH 11 Unmodified _DSGCRTAGIAH_ 0 0 0 L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|128|3|sense L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|128|3|sense L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|128|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.2513427734375 2 544.251097 1086.48764 0.077837 4.2363E-05 -0.94621 -0.00051498 -0.86837 -0.00047261 544.2503969282652 42.599 0.53523 45.838 45.55 46.085 3.2394 57 35 2 0 0 0 0.63951 1 8748 8748 4.1895 0.59301 1 94607 4124 14451 2636 2640 5133 5133 -0.05214334104812224 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_1 2 404.7915954589844 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 64.271 1 67.627 67.127 68.127 3.3557 0 0 0 0.38417 1 15262 15262 0.094841 0.094841 1 + 4125 17914 2637 2641 5134 5134 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_1 2 404.7909851074219 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 70.234 1 73.605 73.105 74.105 3.3713 0 0 0 0.38417 1 17058 17058 0.094841 0.094841 1 + 4126 17914 2637 2641 5135 5135 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_1 2 404.79150390625 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 74.353 1 77.747 77.247 78.247 3.3937 0 0 0 0.38417 1 18300 18300 0.094841 0.094841 1 + 4127 17914 2637 2641 5136 5136 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_1 2 404.7915344238281 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 78.292 1 81.721 81.221 82.221 3.4289 0 0 0 0.38417 1 19460 19460 0.094841 0.094841 1 + 4128 17914 2637 2641 5137 5137 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.79144287109375 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 18.365 1 21.755 21.255 22.255 3.3898 0 0 0 0.38417 1 1540 1540 0.094841 0.094841 1 + 4129 17914 2637 2641 5138 5138 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.79266357421875 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 65.605 1 68.861 68.361 69.361 3.2556 0 0 0 0.38417 1 15708 15708 0.094841 0.094841 1 + 4130 17914 2637 2641 5139 5139 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.7919921875 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 83.559 1 86.971 86.471 87.471 3.4116 0 0 0 0.38417 1 20832 20832 0.094841 0.094841 1 + 4131 17914 2637 2641 5140 5140 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.7913513183594 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 86.905 1 90.346 89.846 90.846 3.4407 0 0 0 0.38417 1 21610 21610 0.094841 0.094841 1 + 4132 17914 2637 2641 5141 5141 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.7911376953125 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 90.302 1 93.759 93.259 94.259 3.4571 0 0 0 0.38417 1 22409 22409 0.094841 0.094841 1 + 4133 17914 2637 2641 5142 5142 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.7920227050781 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 92.008 1 95.474 94.974 95.974 3.4652 0 0 0 0.38417 1 22756 22756 0.094841 0.094841 1 + 4134 17914 2637 2641 5143 5143 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.7917175292969 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 93.858 1 97.327 96.827 97.827 3.4687 0 0 0 0.38417 1 23152 23152 0.094841 0.094841 1 + 4135 17914 2637 2641 5144 5144 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_2 3 404.7911071777344 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 94.447 1 97.919 97.419 98.419 3.472 0 0 0 0.38417 1 23278 23278 0.094841 0.094841 1 + 4136 17914 2637 2641 5145 5145 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7921447753906 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 62.989 1 66.159 65.659 66.659 3.1698 0 0 0 0.38417 1 14972 14972 0.094841 0.094841 1 + 4137 17914 2637 2641 5146 5146 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7917785644531 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 86.388 1 89.768 89.268 90.268 3.3801 0 0 0 0.38417 1 21653 21653 0.094841 0.094841 1 + 4138 17914 2637 2641 5147 5147 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.79071044921875 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 86.797 1 90.177 89.677 90.677 3.3801 0 0 0 0.38417 1 21754 21754 0.094841 0.094841 1 + 4139 17914 2637 2641 5148 5148 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7919006347656 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 86.995 1 90.376 89.876 90.876 3.3801 0 0 0 0.38417 1 21802 21802 0.094841 0.094841 1 + 4140 17914 2637 2641 5149 5149 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.79095458984375 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 87.448 1 90.835 90.335 91.335 3.3873 0 0 0 0.38417 1 21912 21912 0.094841 0.094841 1 + 4141 17914 2637 2641 5150 5150 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.79180908203125 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 88.084 1 91.472 90.972 91.972 3.3873 0 0 0 0.38417 1 22087 22087 0.094841 0.094841 1 + 4142 17914 2637 2641 5151 5151 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.79150390625 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 88.653 1 92.046 91.546 92.546 3.3931 0 0 0 0.38417 1 22236 22236 0.094841 0.094841 1 + 4143 17914 2637 2641 5152 5152 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7917175292969 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 89.381 1 92.774 92.274 93.274 3.3931 0 0 0 0.38417 1 22411 22411 0.094841 0.094841 1 + 4144 17914 2637 2641 5153 5153 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7920227050781 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 89.557 1 92.95 92.45 93.45 3.3931 0 0 0 0.38417 1 22451 22451 0.094841 0.094841 1 + 4145 17914 2637 2641 5154 5154 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7921447753906 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 89.684 1 93.082 92.582 93.582 3.3976 0 0 0 0.38417 1 22484 22484 0.094841 0.094841 1 + 4146 17914 2637 2641 5155 5155 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7916564941406 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 89.819 1 93.216 92.716 93.716 3.3976 0 0 0 0.38417 1 22521 22521 0.094841 0.094841 1 + 4147 17914 2637 2641 5156 5156 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7917785644531 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 89.877 1 93.275 92.775 93.775 3.3976 0 0 0 0.38417 1 22534 22534 0.094841 0.094841 1 + 4148 17914 2637 2641 5157 5157 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.79180908203125 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 114.41 1 117.91 117.41 118.41 3.4963 0 0 0 0.38417 1 28095 28095 0.094841 0.094841 1 + 4149 17914 2637 2641 5158 5158 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7919921875 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 115.57 1 119.05 118.55 119.55 3.4763 0 0 0 0.38417 1 28425 28425 0.094841 0.094841 1 + 4150 17914 2637 2641 5159 5159 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.79083251953125 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 115.69 1 119.15 118.65 119.65 3.462 0 0 0 0.38417 1 28455 28455 0.094841 0.094841 1 + 4151 17914 2637 2641 5160 5160 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7914123535156 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 115.82 1 119.28 118.78 119.78 3.462 0 0 0 0.38417 1 28489 28489 0.094841 0.094841 1 + 4152 17914 2637 2641 5161 5161 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7918395996094 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 115.94 1 119.4 118.9 119.9 3.462 0 0 0 0.38417 1 28522 28522 0.094841 0.094841 1 + 4153 17914 2637 2641 5162 5162 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.791259765625 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 116.08 1 119.54 119.04 120.04 3.462 0 0 0 0.38417 1 28558 28558 0.094841 0.094841 1 + 4154 17914 2637 2641 5163 5163 -0.2451674326759985 DSGDDCDQDQD 11 Unmodified _DSGDDCDQDQD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS UPN47_class_I_Rep_3 4 404.7909851074219 3 404.791295 1211.35205 NaN NaN NaN NaN NaN NaN NaN 116.24 1 119.7 119.2 120.2 3.462 0 0 0 0.38417 1 28601 28601 0.094841 0.094841 1 + 4155 17914 2637 2641 5164 5164 -0.2451674326759985 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS UPN48_class_I_Rep_2 6 513.22509765625 2 513.224736 1024.43492 0.32621 0.00016742 0.64259 0.00032979 0.9688 0.00049721 513.2250068710648 69.831 0.59422 73.352 72.956 73.55 3.5216 56 46 2 0 0 0 0.051515 2 16185 16185;16226 48.346 18.121 1 229730 + 4156 17969 2638 2642 5165;5166 5165 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS UPN48_class_I_Rep_2 6 513.22509765625 2 513.224736 1024.43492 0.32465 0.00016662 0.89776 0.00046075 1.2224 0.00062737 513.2249504581167 70.042 0.21089 73.577 73.553 73.764 3.5359 28 20 2 0 0 0 0.26948 1 16271 16271 15.847 1.2655 1 108650 + 4157 17969 2638 2642 5167 5167 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS UPN48_class_I_Rep_3 7 513.2254638671875 2 513.224736 1024.43492 0.37518 0.00019255 0.4103 0.00021057 0.78547 0.00040312 513.2249847354733 69.787 0.89893 73.3 72.897 73.796 3.5129 135 72 3 0 0 0 0.051515 4 16055 16055;16091;16127;16165 48.346 18.121 1 270180 + 4158 17969 2638 2642 5168;5169;5170;5171 5168 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 513.224736 1024.43492 0.22486 0.0001154 0.66548 0.00034154 0.89034 0.00045694 513.224832323116 69.87 0.30886 73.238 73.035 73.344 3.3678 -0.078491 0.00010727 NaN 48.346 30 27 2 NaN NaN NaN NaN 0 NaN NaN 0 34704 + 4159 17969 2638 2642 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 513.224736 1024.43492 0.07538 3.8687E-05 -0.014958 -7.6768E-06 0.060422 3.101E-05 513.2246046887666 70.115 0.096046 73.397 73.333 73.429 3.2828 0.080736 -0.00059116 NaN 48.346 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 39166 + 4160 17969 2638 2642 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 513.224736 1024.43492 0.077014 3.9525E-05 0.13832 7.0987E-05 0.21533 0.00011051 513.2244977147654 70.33 0.046509 73.613 73.573 73.62 3.2828 0.017768 -0.00072639 NaN 15.847 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 20763 + 4161 17969 2638 2642 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 513.224736 1024.43492 0.28475 0.00014614 0.7098 0.00036429 0.99456 0.00051043 513.225014652466 69.954 0.90036 73.413 73.07 73.971 3.4598 0.096543 0.00015277 NaN 48.346 122 71 2 NaN NaN NaN NaN 0 NaN NaN 0 267830 + 4162 17969 2638 2642 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 513.224736 1024.43492 0.32621 0.00016742 0.64259 0.00032979 0.9688 0.00049721 513.2250068710648 69.831 0.59422 73.352 72.956 73.55 3.5216 0.035431 8.3774E-05 NaN 48.346 56 46 2 NaN NaN NaN NaN 0 NaN NaN 0 229730 + 4163 17969 2638 2642 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 513.224736 1024.43492 0.32465 0.00016662 0.89776 0.00046075 1.2224 0.00062737 513.2249504581167 70.042 0.21089 73.577 73.553 73.764 3.5359 -0.017768 5.315E-05 NaN 15.847 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 108650 + 4164 17969 2638 2642 -0.07632013686588834 DSGDEVIQY 9 Unmodified _DSGDEVIQY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 513.224736 1024.43492 0.37518 0.00019255 0.4103 0.00021057 0.78547 0.00040312 513.2249847354733 69.787 0.89893 73.3 72.897 73.796 3.5129 -0.016395 -0.00015466 NaN 48.346 135 72 3 NaN NaN NaN NaN 0 NaN NaN 0 270180 + 4165 17969 2638 2642 -0.07632013686588834 DSGKFSWSFF 10 Unmodified _DSGKFSWSFF_ 0 0 0 ENSG00000196792.12,STRN3,chr14,-,I15.1,30907045,30911040|34|6.8|3|intron ENSG00000196792.12,STRN3,chr14,-,I15.1,30907045,30911040|34|6.8|3|intron ENSG00000196792.12,STRN3,chr14,-,I15.1,30907045,30911040|34|6.8|3|intron MSMS UPN47_class_I_Rep_3 4 604.273193359375 2 604.274564 1206.53457 NaN NaN NaN NaN NaN NaN NaN 48.927 1 52.162 51.662 52.662 3.2345 0 0 0 0.53105 1 10681 10681 1.4819 0 1 4166 5331 2639 2643 5172 5172 -0.06043151282005965 DSGYSGRTDQY 11 Unmodified _DSGYSGRTDQY_ 0 0 0 REV__nc|ENSG00000119139|Q9UDY2-4|TJP2 REV__nc|ENSG00000119139|Q9UDY2-4|TJP2 MSMS UPN46_class_I_Rep_3 1 416.75555419921875 3 416.84243 1247.50546 NaN NaN NaN NaN NaN NaN NaN 32.87 1 32.87 32.37 33.37 0 0 0 0 0.38417 1 5680 5680 0.45452 0 1 + 4167 18666 2640 2644 5173 5173 -0.10839340368920602 DSIDDDQWP 9 Unmodified _DSIDDDQWP_ 0 0 0 REV__ENSG00000203730|ENST00000367565|TEDDM1 REV__ENSG00000203730|ENST00000367565|TEDDM1 MSMS UPN47_class_I_Rep_2 3 545.7222290039062 2 545.719818 1089.42508 NaN NaN NaN NaN NaN NaN NaN 114.75 1 118.25 117.75 118.75 3.5039 0 0 0 0.38639 1 27950 27950 3.9444 1.6417 1 + 4168 21172 2641 2645 5174 5174 -0.11605201692009359 DSILKSEL 8 Unmodified _DSILKSEL_ 0 0 0 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 MULTI-MSMS UPN47_class_I_Rep_1 2 452.7530517578125 2 452.752933 903.491313 -0.15498 -7.0166E-05 0.35341 0.00016001 0.19843 8.9842E-05 452.75305406618276 47.302 0.55542 50.997 50.673 51.228 3.6951 73 52 2 0 0 0 0.82752 1 10061 10061 39.95 0 1 230170 4169 3288 2642 2646 5175 5175 0.035706589407254796 DSISSWFSLED 11 Unmodified _DSISSWFSLED_ 0 0 0 L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|218|2|anti-sense L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|218|2|anti-sense L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|218|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 643.2832641601562 2 643.282783 1284.55101 0.70627 0.00045433 -0.12091 -7.7776E-05 0.58537 0.00037656 643.2826758399565 70.138 0.94765 70.138 69.798 70.745 0 302 102 4 0 0 0 0.28469 3 16211 16025;16211;16251 17.113 12.241 1 2805900 4170 13602 2643 2647 5176;5177;5178 5177 -0.0798811490656135 DSITLPGRYL 10 Unmodified _DSITLPGRYL_ 0 0 0 HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|13|2|sense HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|13|2|sense HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.8113403320312 2 567.811313 1133.60807 0.41285 0.00023442 -0.28834 -0.00016372 0.12451 7.0701E-05 567.8112123101033 63.676 0.56321 66.932 66.665 67.228 3.2556 76 48 2 0 0 0 0.53004 1 15110 15110 8.1555 1.0538 1 270340 4171 8367 2644 2648 5179 5179 0.04661397160475644 DSKEHRSTC 9 Unmodified _DSKEHRSTC_ 0 0 0 L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|26|3|sense L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|26|3|sense L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|26|3|sense MSMS UPN47_class_I_Rep_1 2 531.7514038085938 2 531.73528 1061.45601 NaN NaN NaN NaN NaN NaN NaN 13.181 1 16.638 16.138 17.138 3.457 0 0 0 0.32573 1 266 266 9.3831 0.78985 1 4172 10219 2645 2649 5180 5180 -0.07226326858722132 DSKIRSKAL 9 Unmodified _DSKIRSKAL_ 0 0 0 ENST00000557054.1_1_14:20923524-20925664:+|nuORF;ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1 ENST00000557054.1_1_14:20923524-20925664:+|nuORF ENST00000557054.1_1_14:20923524-20925664:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 509.80731201171875 2 509.306198 1016.59784 -0.26956 -0.00013729 -0.40689 -0.00020723 -0.67645 -0.00034452 509.3059166277975 15.176 0.46116 18.673 18.466 18.927 3.4968 142 54 4 0 0 0 0.45441 1 746 746 4.897 1.9018 1 90730 4173 1533 2646 2650 5181 5181 0.09020834225896124 DSKIRSKAL 9 Unmodified _DSKIRSKAL_ 0 0 0 ENST00000557054.1_1_14:20923524-20925664:+|nuORF;ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1 ENST00000557054.1_1_14:20923524-20925664:+|nuORF ENST00000557054.1_1_14:20923524-20925664:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 509.3059387207031 2 509.306198 1016.59784 -0.25378 -0.00012925 -0.37116 -0.00018903 -0.62494 -0.00031828 509.3060539290246 15.324 0.50521 18.71 18.489 18.995 3.3864 142 60 3 0 0 0 0.45441 1 780 780 4.897 1.9018 1 87880 4174 1533 2646 2650 5182 5182 0.09020834225896124 DSKIRSKAL 9 Unmodified _DSKIRSKAL_ 0 0 0 ENST00000557054.1_1_14:20923524-20925664:+|nuORF;ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1 ENST00000557054.1_1_14:20923524-20925664:+|nuORF ENST00000557054.1_1_14:20923524-20925664:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 509.30548095703125 2 509.306198 1016.59784 -0.58817 -0.00029956 -0.29065 -0.00014803 -0.87882 -0.00044759 509.80738704356514 15.408 0.4528 18.774 18.543 18.996 3.3659 91 49 3 0 0 0 0.49187 1 766 766 1.4819 0 1 66153 4175 1533 2646 2650 5183 5183 0.09020834225896124 DSKKKVKL 8 Unmodified _DSKKKVKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659294-158663164:-|nuORF ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_3 4 473.3076171875 2 473.30821 944.601866 -0.8711 -0.0004123 -0.15067 -7.1314E-05 -1.0218 -0.00048361 473.30815005862723 13.167 0.90746 16.54 16.291 17.199 3.3734 232 105 4 0 0 0 0.82752 3 240 240;276;306 34.402 13.042 1 644610 4176 4690 2647 2651 5184;5185;5186 5184 0.12734923719619928 DSLCIWTVF 9 Unmodified _DSLCIWTVF_ 0 0 0 REV__L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|92|2|anti-sense REV__L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|92|2|anti-sense MSMS UPN47_class_I_Rep_1 2 541.8160400390625 2 542.26261 1082.51067 NaN NaN NaN NaN NaN NaN NaN 41.234 1 44.906 44.406 45.406 3.6719 0 0 0 0.38639 1 8258 8258 3.9444 0.3479 1 + 4177 30621 2648 2652 5187 5187 -0.02728708040035599 DSLHLIHFM 9 Unmodified _DSLHLIHFM_ 0 0 0 REV__L1MC4_dup4823|chr3:100319728-100320215:-|1.0760758413380178|0.3773834546217189|1.51|151.0|33|3|anti-sense REV__L1MC4_dup4823|chr3:100319728-100320215:-|1.0760758413380178|0.3773834546217189|1.51|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 556.7838134765625 2 556.781502 1111.54845 NaN NaN NaN NaN NaN NaN NaN 17.7 1 21.058 20.558 21.558 3.3581 0 0 0 0.39428 1 1339 1339 2.0598 0.40713 1 + 4178 26916 2649 2653 5188 5188 -0.002861970545609438 DSLLCLIYTC 10 Unmodified _DSLLCLIYTC_ 0 0 0 ENST00000478840.1_1_X:118972286-118974571:-|nuORF ENST00000478840.1_1_X:118972286-118974571:-|nuORF ENST00000478840.1_1_X:118972286-118974571:-|nuORF MSMS UPN48_class_I_Rep_2 6 572.278076171875 2 572.27486 1142.53517 NaN NaN NaN NaN NaN NaN NaN 64.779 1 68.258 67.758 68.758 3.4792 0 0 0 0.53105 1 14673 14673 3.2813 0 1 4179 6987 2650 2654 5189 5189 -0.030398159487958765 DSLLCLVWW 9 Unmodified _DSLLCLVWW_ 0 0 0 L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|4|1|sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|4|1|sense L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 567.3643188476562 2 567.786253 1133.55795 NaN NaN NaN NaN NaN NaN NaN 48.572 1 51.807 51.307 52.307 3.2345 0 0 0 0.39326 1 10572 10572 2.3027 0 1 4180 14638 2651 2655 5190 5190 -0.0034842876902985154 DSLLSRWQN 9 Unmodified _DSLLSRWQN_ 0 0 0 ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-2|TULP3 ENSG00000078246|ENST00000448120|TULP3 ENSG00000078246|ENST00000448120|TULP3 MSMS UPN48_class_I_Rep_2 6 559.7815551757812 2 559.783087 1117.55162 NaN NaN NaN NaN NaN NaN NaN 42.397 1 46.154 45.654 46.654 3.7579 0 0 0 0.38639 1 7845 7845 3.9444 1.6417 1 4181 1182 2652 2656 5191 5191 -0.0024523067620521033 DSLWYFLQG 9 Unmodified _DSLWYFLQG_ 0 0 0 L1M4c_dup1143|chr6:20904815-20906451:+|1.4573152650334746|0.0242002070114369|5.91|151.0|70|2|anti-sense L1M4c_dup1143|chr6:20904815-20906451:+|1.4573152650334746|0.0242002070114369|5.91|151.0|70|2|anti-sense L1M4c_dup1143|chr6:20904815-20906451:+|1.4573152650334746|0.0242002070114369|5.91|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.7716064453125 2 564.771657 1127.52876 NaN NaN NaN NaN NaN NaN NaN 41.224 1 44.975 44.475 45.475 3.7508 0 0 0 0.39518 1 7509 7509 1.8442 0 1 4182 9032 2653 2657 5192 5192 -0.02990249793674593 DSNHAGWIWL 10 Unmodified _DSNHAGWIWL_ 0 0 0 REV__L1M1_dup2121|chr3:196914674-196916042:+|5.56534952347368|0.2782652797405753|4.32|151.0|5|1|sense REV__L1M1_dup2121|chr3:196914674-196916042:+|5.56534952347368|0.2782652797405753|4.32|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 599.787353515625 2 599.78563 1197.55671 NaN NaN NaN NaN NaN NaN NaN 39.841 1 39.841 39.341 40.341 0 0 0 0 0.53105 1 7689 7689 1.4819 0.28856 1 + 4183 24036 2654 2658 5193 5193 -0.03416926813565624 DSNNHHLM 8 Unmodified _DSNNHHLM_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MSMS UPN48_class_I_Rep_1 5 484.2061767578125 2 484.206158 966.397763 NaN NaN NaN NaN NaN NaN NaN 19.565 1 23.103 22.603 23.603 3.5378 0 0 0 0.40738 1 1505 1505 0.79363 0 1 4184 5620 2655 2659 5194 5194 -0.08677963713341796 DSNQYWYW 8 Unmodified _DSNQYWYW_ 0 0 0 REV__L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|163|3|sense REV__L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|163|3|sense MSMS UPN47_class_I_Rep_1 2 581.2333374023438 2 581.235439 1160.45632 NaN NaN NaN NaN NaN NaN NaN 20.299 1 23.911 23.411 24.411 3.6118 0 0 0 0.40738 1 2011 2011 0.79363 0 1 + 4185 29671 2656 2660 5195 5195 -0.11748583867256457 DSPFFGTEFY 10 Unmodified _DSPFFGTEFY_ 0 0 0 REV__L1ME1_dup20640|chr11:3975664-3976551:+|1.1886949103268745|0.0138767752290511|6.42|151.0|61|3|anti-sense REV__L1ME1_dup20640|chr11:3975664-3976551:+|1.1886949103268745|0.0138767752290511|6.42|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 605.2596435546875 2 605.258579 1208.50261 0.50013 0.00030271 1.037 0.00062763 1.5371 0.00093034 605.2591082808397 52.953 0.71067 56.148 55.911 56.621 3.1948 71 41 2 0 0 0 0.55983 1 11915 11915 3.9444 0.66309 1 247900 + 4186 27664 2657 2661 5196 5196 -0.09330563755793264 DSQLEKVEDT 10 Unmodified _DSQLEKVEDT_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS UPN46_class_I_Rep_3 1 582.2742309570312 2 582.274958 1162.53536 NaN NaN NaN NaN NaN NaN NaN 110.91 1 110.91 110.41 111.41 0 0 0 0 0.53105 1 27327 27327 3.2813 0.78282 1 4187 856 2658 2662 5197 5197 -0.03940401423596995 DSRDVHSP 8 Unmodified _DSRDVHSP_ 0 0 0 REV__ENSG00000218823|ENST00000404991|PAPOLB REV__ENSG00000218823|ENST00000404991|PAPOLB MSMS UPN46_class_I_Rep_3 1 456.7115783691406 2 456.712131 911.409708 NaN NaN NaN NaN NaN NaN NaN 110.13 1 110.13 109.63 110.63 0 0 0 0 0.40643 1 27108 27108 2.0598 0.40713 1 + 4188 21280 2659 2663 5198 5198 -0.0495402369851945 DSRESCVEEN 10 Unmodified _DSRESCVEEN_ 0 0 0 nc|ENSG00000135679|Q00987-4|MDM2;nc|ENSG00000135679|Q00987-3|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2 nc|ENSG00000135679|Q00987-4|MDM2 nc|ENSG00000135679|Q00987-4|MDM2 MSMS UPN48_class_I_Rep_1 5 584.2352905273438 2 584.232767 1166.45098 NaN NaN NaN NaN NaN NaN NaN 112.91 1 116.54 116.04 117.04 3.6314 0 0 0 0.53105 1 27415 27415 1.1933 0.23107 1 4189 2923 2660 2664 5199 5199 -0.12558675511991169 DSSGLSKFH 9 Unmodified _DSSGLSKFH_ 0 0 0 REV__ENSG00000198130|ENST00000359678|HIBCH REV__ENSG00000198130|ENST00000359678|HIBCH MSMS UPN47_class_I_Rep_3 4 489.2371826171875 2 489.237981 976.461409 NaN NaN NaN NaN NaN NaN NaN 43.399 1 46.64 46.14 47.14 3.2419 0 0 0 0.3967 1 9002 9002 1.4819 0 1 + 4190 21114 2661 2665 5200 5200 -0.02776280004616183 DSSPSLLAFL 10 Unmodified _DSSPSLLAFL_ 0 0 0 ENST00000392038.6_1_19:40738259-40738439:-|nuORF ENST00000392038.6_1_19:40738259-40738439:-|nuORF ENST00000392038.6_1_19:40738259-40738439:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 525.2791137695312 2 525.279315 1048.54408 0.35409 0.00018599 -0.018075 -9.4943E-06 0.33601 0.0001765 525.2792587811019 80.388 0.83926 83.853 83.67 84.509 3.465 173 97 2 0 0 0 0.40227 1 20169 20169 19.257 2.1441 1 1600100 4191 6518 2662 2666 5201 5201 0.02174617003538515 DSSPSLLAFL 10 Unmodified _DSSPSLLAFL_ 0 0 0 ENST00000392038.6_1_19:40738259-40738439:-|nuORF ENST00000392038.6_1_19:40738259-40738439:-|nuORF ENST00000392038.6_1_19:40738259-40738439:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 525.2799682617188 2 525.279315 1048.54408 0.15279 8.0258E-05 0.26526 0.00013933 0.41805 0.00021959 525.2793829333194 80.536 0.89201 83.905 83.724 84.616 3.3694 156 115 2 0 0 0 0.33585 1 20039 20039 25.399 2.663 1 334340 4192 6518 2662 2666 5202 5202 0.02174617003538515 DSSSVTWVKY 10 Unmodified _DSSSVTWVKY_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MULTI-MSMS UPN47_class_I_Rep_1 2 586.284912109375 2 586.285128 1170.5557 0.37718 0.00022113 -0.37417 -0.00021937 0.0030128 1.7664E-06 586.2847764504778 73.576 0.67221 76.962 76.556 77.228 3.3861 115 61 3 0 0 0 0.4561 4 18064 18017;18064;18103;18140 15.248 15.248 1 260380 + 4193 20067 2663 2667 5203;5204;5205;5206 5204 -0.022751859731215518 DSSSVTWVKY 10 Unmodified _DSSSVTWVKY_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MULTI-MSMS UPN47_class_I_Rep_2 3 586.2844848632812 2 586.285128 1170.5557 0.4421 0.0002592 -0.40434 -0.00023706 0.037766 2.2142E-05 586.2847412176412 73.654 0.69972 76.959 76.696 77.395 3.3048 148 67 3 0 0 0 0.34027 5 18159 18072;18117;18159;18177;18192 24.991 24.991 1 221000 + 4194 20067 2663 2667 5207;5208;5209;5210;5211 5209 -0.022751859731215518 DSSSVTWVKY 10 Unmodified _DSSSVTWVKY_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MULTI-MSMS UPN47_class_I_Rep_3 4 586.2847290039062 2 586.285128 1170.5557 0.45702 0.00026794 -0.30257 -0.00017739 0.15445 9.0551E-05 586.2847799321586 73.701 0.66437 76.937 76.683 77.347 3.2363 130 66 3 0 0 0 0.4561 4 18198 18159;18198;18234;18272 15.248 15.248 1 274680 + 4195 20067 2663 2667 5212;5213;5214;5215 5213 -0.022751859731215518 DSTQSNFQSCM 11 Unmodified _DSTQSNFQSCM_ 0 0 0 Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|25|2|sense Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|25|2|sense Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 624.1918334960938 2 624.236995 1246.45944 NaN NaN NaN NaN NaN NaN NaN 33.4 1 37.061 36.561 37.561 3.6607 0 0 0 0.38417 1 5266 5266 0.96228 0.36078 1 4196 33401 2664 2668 5216 5216 -0.15393444867027029 DSVKVTISK 9 Unmodified _DSVKVTISK_ 0 0 0 REV__ENST00000490769.1_1_19:43697526-43698852:-|nuORF REV__ENST00000490769.1_1_19:43697526-43698852:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 488.294921875 2 488.787307 975.560061 -0.1236 -6.0416E-05 0.30045 0.00014686 0.17684 8.6439E-05 488.78737775440175 13.304 0.22429 16.692 16.62 16.844 3.388 50 26 3 0 0 0 0.12354 1 317 317 3.5965 1.7523 1 52622 + 4197 21333 2665 2669 5217 5217 0.0713032324043752 DSVNYWDYD 9 Unmodified _DSVNYWDYD_ 0 0 0 REV__nc|ENSG00000173264|Q96N19-5|GPR137 REV__nc|ENSG00000173264|Q96N19-5|GPR137 MSMS UPN47_class_I_Rep_1 2 588.72607421875 2 588.727643 1175.44073 NaN NaN NaN NaN NaN NaN NaN 29.379 1 33.137 32.637 33.637 3.7578 0 0 0 0.39428 1 4658 4658 2.0598 0.40713 1 + 4198 20481 2666 2670 5218 5218 -0.139969151749483 DSVVVHVY 8 Unmodified _DSVVVHVY_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MSMS UPN46_class_I_Rep_3 1 459.23980712890625 2 459.239993 916.465432 NaN NaN NaN NaN NaN NaN NaN 48.136 1 48.136 47.636 48.636 0 0 0 0 1.0602E-07 1 10004 10004 70.865 34.82 1 4199 4557 2667 2671 5219 5219 0.0038580948910293955 DSYTTNKVHA 10 Unmodified _DSYTTNKVHA_ 0 0 0 GNB3|p.D163Tfs*26|1|0.15|ENSG00000111664|chr12:6843684-6843684|G/-|frameshift_variant;nc|ENSG00000111664|P16520-2|GNB3;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000172354|ENST00000303210|GNB2;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1 GNB3|p.D163Tfs*26|1|0.15|ENSG00000111664|chr12:6843684-6843684|G/-|frameshift_variant GNB3|p.D163Tfs*26|1|0.15|ENSG00000111664|chr12:6843684-6843684|G/-|frameshift_variant MSMS UPN47_class_I_Rep_3 4 568.2908325195312 2 568.272552 1134.53055 NaN NaN NaN NaN NaN NaN NaN 40.494 1 43.731 43.231 44.231 3.2372 0 0 0 0.53105 1 8116 8116 3.2813 1.2216 1 4200 1184 2668 2672 5220 5220 -0.03133240775696322 DTAPLGNNLVA 11 Unmodified _DTAPLGNNLVA_ 0 0 0 L1ME1_dup3438|chr2:68754146-68755081:-|3.2361013980399327|0.0682107881044511|5.57|151.0|7|1|sense L1ME1_dup3438|chr2:68754146-68755081:-|3.2361013980399327|0.0682107881044511|5.57|151.0|7|1|sense L1ME1_dup3438|chr2:68754146-68755081:-|3.2361013980399327|0.0682107881044511|5.57|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 542.7863159179688 2 542.785296 1083.55604 NaN NaN NaN NaN NaN NaN NaN 31.766 1 35.407 34.907 35.907 3.641 0 0 0 0.38417 1 4819 4819 2.4985 0.43874 1 4201 12398 2669 2673 5221 5221 0.017602337466996687 DTAVRHVL 8 Unmodified _DTAVRHVL_ 0 0 0 nc|ENSG00000149273|P23396-2|RPS3;ENSG00000149273|ENST00000531188|RPS3 nc|ENSG00000149273|P23396-2|RPS3 nc|ENSG00000149273|P23396-2|RPS3 MULTI-MSMS UPN47_class_I_Rep_1 2 455.75830078125 2 455.758884 909.503215 -0.38455 -0.00017526 0.0056695 2.5839E-06 -0.37888 -0.00017268 455.75869555304683 27.01 0.79316 30.776 30.406 31.199 3.7662 78 61 2 0 0 0 0.82752 3 3949 3949;3983;4048 21.537 11.463 1 106910 4202 3535 2670 2674 5222;5223;5224 5222 0.044843204745689036 DTAVRHVL 8 Unmodified _DTAVRHVL_ 0 0 0 nc|ENSG00000149273|P23396-2|RPS3;ENSG00000149273|ENST00000531188|RPS3 nc|ENSG00000149273|P23396-2|RPS3 nc|ENSG00000149273|P23396-2|RPS3 MULTI-MSMS UPN47_class_I_Rep_2 3 455.7587890625 2 455.758884 909.503215 -0.49453 -0.00022539 0.018087 8.2433E-06 -0.47644 -0.00021714 455.758745653657 27.226 0.87947 30.725 30.248 31.127 3.4986 111 75 2 0 0 0 0.82752 3 4016 4016;4053;4088 34.402 9.0024 1 120760 4203 3535 2670 2674 5225;5226;5227 5225 0.044843204745689036 DTAVRHVL 8 Unmodified _DTAVRHVL_ 0 0 0 nc|ENSG00000149273|P23396-2|RPS3;ENSG00000149273|ENST00000531188|RPS3 nc|ENSG00000149273|P23396-2|RPS3 nc|ENSG00000149273|P23396-2|RPS3 MULTI-MSMS UPN47_class_I_Rep_3 4 455.75823974609375 2 455.758884 909.503215 -0.84738 -0.0003862 0.3904 0.00017793 -0.45698 -0.00020827 455.758880614132 27.535 0.77388 30.878 30.398 31.172 3.3422 113 66 2 0 0 0 0.82752 3 4233 4158;4194;4233 19.257 6.5061 1 102260 4204 3535 2670 2674 5228;5229;5230 5230 0.044843204745689036 DTDHYFLRY 9 Unmodified _DTDHYFLRY_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN47_class_I_Rep_1 2 615.2831420898438 2 615.28292 1228.55129 0.23604 0.00014523 0.00014633 9.0032E-08 0.23619 0.00014532 615.2829971244438 48.463 1.2853 52.145 51.757 53.042 3.6819 225 83 4 0 0 0 0.0053074 9 10410 10364;10410;10449;10489;10532;10571;10615;10638;10719 79.596 79.596 1 569250 4205 2447 2671 2675 5231;5232;5233;5234;5235;5236;5237;5238;5239 5232 -0.053846503960585324 DTDHYFLRY 9 Unmodified _DTDHYFLRY_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN47_class_I_Rep_1 2 410.5242919921875 3 410.524372 1228.55129 -0.21031 -8.6336E-05 0.18475 7.5846E-05 -0.025553 -1.049E-05 410.5244158395582 48.419 1.6962 52.101 51.672 53.368 3.6819 312 109 4 0 0 0 0.0051925 7 10494 10370;10415;10455;10494;10537;10579;10620 100.71 100.71 1 1477500 4206 2447 2671 2675 5240;5241;5242;5243;5244;5245;5246 5243 -0.053846503960585324 DTDHYFLRY 9 Unmodified _DTDHYFLRY_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN47_class_I_Rep_2 3 615.282958984375 2 615.28292 1228.55129 0.38545 0.00023716 -0.26555 -0.00016339 0.1199 7.3771E-05 615.2827833410582 48.758 1.0994 52.105 51.771 52.87 3.3465 192 66 4 0 0 0 0.0063213 7 10571 10489;10531;10571;10615;10656;10700;10739 89.401 89.401 1 500850 4207 2447 2671 2675 5247;5248;5249;5250;5251;5252;5253 5249 -0.053846503960585324 DTDHYFLRY 9 Unmodified _DTDHYFLRY_ 0 0 0 nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN47_class_I_Rep_3 4 615.2830810546875 2 615.28292 1228.55129 0.43852 0.00026981 -0.24946 -0.00015349 0.18906 0.00011632 615.2828078694997 48.824 1.1648 52.058 51.784 52.949 3.2345 168 66 3 0 0 0 0.0053074 8 10677 10589;10634;10677;10717;10763;10802;10849;10912 79.596 66.554 1 477710 4208 2447 2671 2675 5254;5255;5256;5257;5258;5259;5260;5261 5256 -0.053846503960585324 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 548.2879028320312 2 548.287671 1094.56079 0.44 0.00024125 0.43847 0.00024041 0.87846 0.00048165 548.2881256254349 58.848 0.79042 62.266 61.93 62.721 3.4171 91 52 2 0 0 0 0.0050147 2 13606 13606;13651 103.42 40.847 1 358350 4209 1552 2672 2676 5262;5263 5262 0.017291178894765835 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 548.2879028320312 2 548.287671 1094.56079 0.49411 0.00027092 0.4682 0.00025671 0.96231 0.00052762 548.2881093762006 59.076 0.87708 62.357 61.947 62.824 3.2818 97 57 2 0 0 0 0.015012 1 13706 13706 103.42 47.242 1 397170 4210 1552 2672 2676 5264 5264 0.017291178894765835 DTDISLIRY 9 Unmodified _DTDISLIRY_ 0 0 0 ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000474543.5_1_20:57564608-57568882:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 548.28759765625 2 548.287671 1094.56079 0.33954 0.00018617 0.47928 0.00026278 0.81882 0.00044895 548.288135229124 59.13 0.86551 62.296 61.835 62.7 3.1658 87 51 2 0 0 0 0.015012 1 13788 13788 103.42 47.242 1 366330 4211 1552 2672 2676 5265 5265 0.017291178894765835 DTEFPNFKY 9 Unmodified _DTEFPNFKY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MSMS UPN47_class_I_Rep_3 4 580.7667846679688 2 580.766571 1159.51859 NaN NaN NaN NaN NaN NaN NaN 59.738 1 62.903 62.403 63.403 3.1651 0 0 0 0.10941 1 13978 13978 22.736 7.898 1 4212 2751 2673 2677 5266 5266 -0.05478857518892255 DTFPNKRPR 9 Unmodified _DTFPNKRPR_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MSMS UPN47_class_I_Rep_1 2 565.8070678710938 2 565.806897 1129.59924 NaN NaN NaN NaN NaN NaN NaN 27.195 1 30.962 30.462 31.462 3.7662 0 0 0 0.38784 1 4007 4007 3.5965 0 1 4213 750 2674 2678 5267 5267 0.03962468314648504 DTFRVFFKGS 10 Unmodified _DTFRVFFKGS_ 0 0 0 CON__Q3T052 CON__Q3T052 CON__Q3T052 MSMS UPN48_class_I_Rep_1 5 401.8778076171875 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 15.312 1 18.83 18.33 19.33 3.5184 0 0 0 0.53105 1 584 584 1.5923 0.52082 1 + 4214 654 2675 2679 5268 5268 0.01520816880338316 DTFSVAFIKK 10 Unmodified _DTFSVAFIKK_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MULTI-MSMS UPN48_class_I_Rep_1 5 578.3235473632812 2 578.324057 1154.63356 0.41208 0.00023832 -0.24787 -0.00014335 0.16421 9.4969E-05 578.3238631032265 50.765 0.62305 54.29 54.054 54.677 3.5246 55 39 2 0 0 0 0.55448 1 10438 10438 4.897 0.56777 1 145390 4215 3713 2676 2680 5269 5269 0.062428716828890174 DTFSVAFIKK 10 Unmodified _DTFSVAFIKK_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MULTI-SECPEP UPN48_class_I_Rep_2 6 578.0394897460938 2 578.324057 1154.63356 0.45939 0.00026568 -0.46721 -0.0002702 -0.0078176 -4.5211E-06 578.3235766775346 50.621 0.59608 54.289 54.073 54.669 3.6679 51 35 2 0 0 0 0.84575 1 10318 10318 4.897 2.1618 1 113580 4216 3713 2676 2680 5270 5270 0.062428716828890174 DTFSVAFIKK 10 Unmodified _DTFSVAFIKK_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MULTI-MSMS UPN48_class_I_Rep_3 7 578.3742065429688 2 578.324057 1154.63356 0.36808 0.00021287 0.14454 8.3591E-05 0.51262 0.00029646 578.3241106206806 50.806 0.55449 54.417 54.129 54.683 3.6105 52 36 2 0 0 0 0.54148 1 10387 10387 6.6304 2.3011 1 172280 4217 3713 2676 2680 5271 5271 0.062428716828890174 DTFYFLLLGD 10 Unmodified _DTFYFLLLGD_ 0 0 0 L1PA15-16_dup331|chr4:105435584-105437239:+|1.000763049886292|0.1133242427825373|3.14|150.0|92|2|anti-sense L1PA15-16_dup331|chr4:105435584-105437239:+|1.000763049886292|0.1133242427825373|3.14|150.0|92|2|anti-sense L1PA15-16_dup331|chr4:105435584-105437239:+|1.000763049886292|0.1133242427825373|3.14|150.0|92|2|anti-sense MSMS UPN47_class_I_Rep_3 4 602.2982177734375 2 602.300247 1202.58594 NaN NaN NaN NaN NaN NaN NaN 71.606 1 74.824 74.324 75.324 3.2188 0 0 0 0.53105 1 17579 17579 1.4819 0.15237 1 4218 14003 2677 2681 5272 5272 -0.007248273079540013 DTGKECRFY 9 Unmodified _DTGKECRFY_ 0 0 0 REV__ENSG00000241322|ENST00000395906|FBXW10B REV__ENSG00000241322|ENST00000395906|FBXW10B MULTI-MSMS UPN47_class_I_Rep_2 3 559.7512817382812 2 559.750398 1117.48624 0.42105 0.00023568 0.33991 0.00019026 0.76096 0.00042595 559.7507014296735 71.443 0.57034 74.733 74.536 75.106 3.2899 53 48 2 0 0 0 0.45688 1 17472 17472 4.756 0 1 85656 + 4219 20428 2678 2682 5273 5273 -0.06779968193563946 DTGKECRFY 9 Unmodified _DTGKECRFY_ 0 0 0 REV__ENSG00000241322|ENST00000395906|FBXW10B REV__ENSG00000241322|ENST00000395906|FBXW10B MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 559.750398 1117.48624 0.44797 0.00025075 0.9329 0.00052219 1.3809 0.00077294 560.2524889240489 71.441 0.56909 74.66 74.454 75.023 3.2188 -0.0024817 0.00041001 NaN 4.756 61 44 2 NaN NaN NaN NaN 0 NaN NaN 0 105530 + 4220 20428 2678 2682 -0.06779968193563946 DTGVHLWSSG 10 Unmodified _DTGVHLWSSG_ 0 0 0 REV__ENSG00000205356|ENST00000447648|TECPR1 REV__ENSG00000205356|ENST00000447648|TECPR1 MSMS UPN47_class_I_Rep_1 2 529.7489624023438 2 529.748713 1057.48287 NaN NaN NaN NaN NaN NaN NaN 32.859 1 36.572 36.072 37.072 3.7131 0 0 0 0.53105 1 5710 5710 5.7319 0 1 + 4221 21219 2679 2683 5274 5274 -0.04356894975921932 DTGYKFNIY 9 Unmodified _DTGYKFNIY_ 0 0 0 ENST00000413837.1_1_X:46506424-46506697:-|nuORF ENST00000413837.1_1_X:46506424-46506697:-|nuORF ENST00000413837.1_1_X:46506424-46506697:-|nuORF MSMS UPN47_class_I_Rep_3 4 560.7703857421875 2 560.769114 1119.52368 NaN NaN NaN NaN NaN NaN NaN 54.376 1 57.562 57.062 58.062 3.1856 0 0 0 0.29868 1 12342 12342 10.824 0.75 1 4222 6637 2680 2684 5275 5275 -0.0313055365627406 DTHGPHPVH 9 Unmodified _DTHGPHPVH_ 0 0 0 REV__MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|96|3|anti-sense REV__MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|96|3|anti-sense MSMS UPN47_class_I_Rep_3 4 498.7368469238281 2 498.73594 995.457327 NaN NaN NaN NaN NaN NaN NaN 17.85 1 21.208 20.708 21.708 3.3581 0 0 0 0.38478 1 1380 1380 4.3292 0.38484 1 + 4223 31872 2681 2685 5276 5276 -0.040583247076710904 DTIEIITDR 9 Unmodified _DTIEIITDR_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN48_class_I_Rep_1 5 538.2853393554688 2 538.285128 1074.5557 0.35376 0.00019042 0.017966 9.6707E-06 0.37172 0.00020009 538.2850618911847 49.106 1.1481 52.63 52.275 53.423 3.5239 242 82 4 0 0 0 0.0039863 6 9910 9834;9871;9910;9948;9994;10034 173.69 59.037 1 2349500 4224 2393 2682 2686 5277;5278;5279;5280;5281;5282 5279 0.021408140268476927 DTIEIITDR 9 Unmodified _DTIEIITDR_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN48_class_I_Rep_2 6 538.2853393554688 2 538.285128 1074.5557 0.38944 0.00020963 0.024345 1.3105E-05 0.41379 0.00022274 538.285061255564 48.968 1.1882 52.686 52.201 53.389 3.7175 225 80 4 0 0 0 0.0039863 5 9887 9766;9808;9847;9887;9938 176.43 61.778 1 2359500 4225 2393 2682 2686 5283;5284;5285;5286;5287 5286 0.021408140268476927 DTIEIITDR 9 Unmodified _DTIEIITDR_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN48_class_I_Rep_3 7 538.2853393554688 2 538.285128 1074.5557 0.47577 0.0002561 -0.033088 -1.7811E-05 0.44268 0.00023829 538.28502758582 49.114 1.1478 52.743 52.322 53.469 3.6291 219 82 4 0 0 0 8.5747E-06 5 9789 9751;9789;9828;9870;9911 160.69 50.015 1 2234400 4226 2393 2682 2686 5288;5289;5290;5291;5292 5289 0.021408140268476927 DTISLVKGYV 10 Unmodified _DTISLVKGYV_ 0 0 0 REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|9|1|sense REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 547.7947998046875 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 34.372 1 34.372 33.872 34.872 0 0 0 0 0.53105 1 6128 6128 5.7319 2.4505 1 + 4227 24975 2683 2687 5293 5293 0.05886878928936312 DTKRGTIH 8 Unmodified _DTKRGTIH_ 0 0 0 L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 464.25439453125 2 464.253966 926.493378 0.094985 4.4097E-05 0.84901 0.00039416 0.944 0.00043825 464.25437035657416 74.525 0.090622 78.015 77.98 78.071 3.49 17 9 2 0 0 0 0.82752 1 17615 17615 2.3027 0 1 95547 4228 13750 2684 2688 5294 5294 0.02719132469201213 DTKRGTIH 8 Unmodified _DTKRGTIH_ 0 0 0 L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 464.75506591796875 2 464.253966 926.493378 0.18365 8.526E-05 0.045656 2.1196E-05 0.2293 0.00010646 464.2539147530922 74.877 0.21863 78.467 78.423 78.642 3.59 30 25 2 0 0 0 0.72333 1 17668 17668 0.69038 0 1 69220 4229 13750 2684 2688 5295 5295 0.02719132469201213 DTKRGTIH 8 Unmodified _DTKRGTIH_ 0 0 0 L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 464.253966 926.493378 0.093928 4.3606E-05 1.0711 0.00049727 1.165 0.00054087 464.254489301302 75.018 0.16094 78.508 78.436 78.597 3.49 -0.0069904 0.00092572 NaN 0.69038 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 110460 4230 13750 2684 2688 0.02719132469201213 DTKRGTIH 8 Unmodified _DTKRGTIH_ 0 0 0 L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|36|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 464.253966 926.493378 0.23964 0.00011125 -0.34888 -0.00016197 -0.10924 -5.0715E-05 464.25364036178576 75.004 0.29829 78.57 78.455 78.754 3.5658 0.054958 -0.00039275 NaN 0.69038 41 30 2 NaN NaN NaN NaN 0 NaN NaN 0 60343 4231 13750 2684 2688 0.02719132469201213 DTLASSPWV 9 Unmodified _DTLASSPWV_ 0 0 0 L1PREC2_dup3475|chr7:106900200-106902336:-|2.621735337794696|0.0810379724375732|5.02|151.0|82|1|anti-sense L1PREC2_dup3475|chr7:106900200-106902336:-|2.621735337794696|0.0810379724375732|5.02|151.0|82|1|anti-sense L1PREC2_dup3475|chr7:106900200-106902336:-|2.621735337794696|0.0810379724375732|5.02|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_1 2 488.2425231933594 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 24.939 1 28.689 28.189 29.189 3.7495 0 0 0 0.39518 1 3343 3343 1.8442 0 1 4232 15443 2685 2689 5296 5296 -0.01734511719087095 DTLDGFKGLV 10 Unmodified _DTLDGFKGLV_ 0 0 0 REV__nc|ENSG00000197381|P78563-6|ADARB1 REV__nc|ENSG00000197381|P78563-6|ADARB1 MULTI-MSMS UPN47_class_I_Rep_1 2 532.7844848632812 2 532.784764 1063.55498 0.31629 0.00016852 -0.26068 -0.00013889 0.055609 2.9628E-05 532.784464157804 66.969 0.60362 70.33 70.052 70.656 3.3611 73 48 2 0 0 0 0.48573 1 16049 16049 13.042 1.4022 1 182950 + 4233 21078 2686 2690 5297 5297 0.025740193778119647 DTLDGFKGLV 10 Unmodified _DTLDGFKGLV_ 0 0 0 REV__nc|ENSG00000197381|P78563-6|ADARB1 REV__nc|ENSG00000197381|P78563-6|ADARB1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 532.784764 1063.55498 0.24126 0.00012854 -0.15344 -8.1748E-05 0.087824 4.6791E-05 532.7845767747249 67.155 0.65332 70.419 70.16 70.813 3.2636 0.021975 1.1052E-05 NaN 13.042 86 50 2 NaN NaN NaN NaN 0 NaN NaN 0 139280 + 4234 21078 2686 2690 0.025740193778119647 DTLDGFKGLV 10 Unmodified _DTLDGFKGLV_ 0 0 0 REV__nc|ENSG00000197381|P78563-6|ADARB1 REV__nc|ENSG00000197381|P78563-6|ADARB1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 532.784764 1063.55498 0.39537 0.00021065 -0.10516 -5.6026E-05 0.29022 0.00015462 532.7846197350648 67.25 0.5468 70.441 70.271 70.817 3.1914 0.04454 6.2497E-05 NaN 13.042 62 38 2 NaN NaN NaN NaN 0 NaN NaN 0 122650 + 4235 21078 2686 2690 0.025740193778119647 DTLFSFSFF 9 Unmodified _DTLFSFSFF_ 0 0 0 L1MC1_dup11101|chr15:44357160-44358072:+|1.8645510281711977|0.0242323515005947|6.27|151.0|54|2|anti-sense L1MC1_dup11101|chr15:44357160-44358072:+|1.8645510281711977|0.0242323515005947|6.27|151.0|54|2|anti-sense L1MC1_dup11101|chr15:44357160-44358072:+|1.8645510281711977|0.0242323515005947|6.27|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.7617797851562 2 555.760758 1109.50696 NaN NaN NaN NaN NaN NaN NaN 87.102 1 90.739 90.239 91.239 3.6372 0 0 0 0.22485 1 21759 21759 14.838 3.7238 1 4236 11086 2687 2691 5298 5298 -0.043410545422375435 DTLFSFSFF 9 Unmodified _DTLFSFSFF_ 0 0 0 L1MC1_dup11101|chr15:44357160-44358072:+|1.8645510281711977|0.0242323515005947|6.27|151.0|54|2|anti-sense L1MC1_dup11101|chr15:44357160-44358072:+|1.8645510281711977|0.0242323515005947|6.27|151.0|54|2|anti-sense L1MC1_dup11101|chr15:44357160-44358072:+|1.8645510281711977|0.0242323515005947|6.27|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_2 3 555.76123046875 2 555.760758 1109.50696 NaN NaN NaN NaN NaN NaN NaN 87.266 1 90.707 90.207 91.207 3.4407 0 0 0 0.15455 1 21692 21692 19.257 4.4187 1 4237 11086 2687 2691 5299 5299 -0.043410545422375435 DTLHGRVL 8 Unmodified _DTLHGRVL_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|149|3|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|149|3|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|149|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 455.7589416503906 2 455.758884 909.503215 -0.38455 -0.00017526 0.0056695 2.5839E-06 -0.37888 -0.00017268 455.75869555304683 27.01 0.79316 30.776 30.406 31.199 3.7662 78 61 2 0 0 0 0.82752 1 3905 3905 6.2058 0 1 106910 4238 14362 2688 2692 5300 5300 0.044843204745689036 DTLYVLSLPT 10 Unmodified _DTLYVLSLPT_ 0 0 0 ENSG00000186912|ENST00000374519|P2RY4 ENSG00000186912|ENST00000374519|P2RY4 ENSG00000186912|ENST00000374519|P2RY4 MSMS UPN48_class_I_Rep_2 6 561.3069458007812 2 561.308072 1120.60159 NaN NaN NaN NaN NaN NaN NaN 44.029 1 47.791 47.291 48.291 3.7617 0 0 0 0.53105 1 8346 8346 1.4819 0 1 4239 5174 2689 2693 5301 5301 0.04611459209104396 DTNKYGIFK 9 Unmodified _DTNKYGIFK_ 0 0 0 Charlie1a_dup2295|chr6:107397136-107398570:+|1.7386637925395068|0.0362883842133682|5.58|151.0|45|3|sense Charlie1a_dup2295|chr6:107397136-107398570:+|1.7386637925395068|0.0362883842133682|5.58|151.0|45|3|sense Charlie1a_dup2295|chr6:107397136-107398570:+|1.7386637925395068|0.0362883842133682|5.58|151.0|45|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 543.28515625 2 543.284931 1084.55531 0.41841 0.00022731 -0.13378 -7.2682E-05 0.28463 0.00015463 543.2847952421597 42.032 1.3945 45.789 45.41 46.805 3.7579 359 133 4 0 0 0 0.46869 1 8016 8016 3.9444 0.3479 1 1743100 4240 463 2690 2694 5302 5302 0.016414390976706272 DTNNVVQF 8 Unmodified _DTNNVVQF_ 0 0 0 L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 468.7244567871094 2 468.724707 935.43486 0.035993 1.6871E-05 -0.01762 -8.2589E-06 0.018373 8.612E-06 468.72471629347564 49.928 0.63526 53.271 53.026 53.661 3.3431 55 35 2 0 0 0 0.82752 1 10924 10924 21.537 2.175 1 109550 4241 12373 2691 2695 5303 5303 -0.03543968895939997 DTNNVVQF 8 Unmodified _DTNNVVQF_ 0 0 0 L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 468.724707 935.43486 -0.054194 -2.5402E-05 0.065687 3.0789E-05 0.011493 5.3872E-06 468.7246986805911 49.633 0.61312 53.292 53.051 53.665 3.6592 0.020702 0.00010078 NaN 21.537 57 37 2 NaN NaN NaN NaN 0 NaN NaN 0 100270 4242 12373 2691 2695 -0.03543968895939997 DTNNVVQF 8 Unmodified _DTNNVVQF_ 0 0 0 L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|17|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 468.724707 935.43486 0.00065056 3.0493E-07 -0.16164 -7.5762E-05 -0.16098 -7.5457E-05 468.7246214089237 50.025 0.51534 53.251 52.99 53.505 3.2262 -0.020304 -0.00011233 NaN 21.537 54 29 2 NaN NaN NaN NaN 0 NaN NaN 0 100700 4243 12373 2691 2695 -0.03543968895939997 DTNRAHMLR 9 Unmodified _DTNRAHMLR_ 0 0 0 REV__nc|ENSG00000157554|P11308-2|ERG REV__nc|ENSG00000157554|P11308-2|ERG MULTI-MSMS UPN48_class_I_Rep_3 7 557.7847900390625 2 557.282731 1112.55091 0.32167 0.00017926 -0.50652 -0.00028228 -0.18485 -0.00010301 557.2823519163537 42.53 0.64404 46.172 45.822 46.467 3.6415 86 50 2 0 0 0 0.48846 1 7861 7861 1.8442 1.8442 1 157950 + 4244 32022 2692 2696 5304 5304 -0.0008634859689209406 DTNYQYRG 8 Unmodified _DTNYQYRG_ 0 0 0 REV__ENSG00000112299|ENST00000367928|VNN1 REV__ENSG00000112299|ENST00000367928|VNN1 MULTI-SECPEP UPN47_class_I_Rep_3 4 508.21209716796875 2 508.725238 1015.43592 -0.44767 -0.00022774 0.5847 0.00029745 0.13703 6.9708E-05 508.72543598890235 24.814 0.59298 28.165 27.938 28.531 3.3509 67 44 3 0 0 0 0.72333 1 3423 3423 2.3027 2.3027 1 93295 + 4245 18480 2693 2697 5305 5305 -0.07117754527041598 DTPAASKKTM 10 Unmodified _DTPAASKKTM_ 0 0 0 REV__ENSG00000172349|ENST00000683961|IL16 REV__ENSG00000172349|ENST00000683961|IL16 MULTI-MSMS UPN47_class_I_Rep_3 4 525.2681274414062 2 525.268424 1048.5223 -0.51275 -0.00026933 -0.23021 -0.00012092 -0.74296 -0.00039025 525.2683283501203 14.707 0.17059 18.076 17.973 18.143 3.3697 27 20 2 0 0 0 0.56374 1 607 607 1.1933 0.50296 1 23547 + 4246 20445 2694 2698 5306 5306 -2.511016714379366E-05 DTPGFIVNR 9 Unmodified _DTPGFIVNR_ 0 0 0 ENST00000510728.5_1_4:108948819-108949120:+|nuORF;ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH ENST00000510728.5_1_4:108948819-108949120:+|nuORF ENST00000510728.5_1_4:108948819-108949120:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 509.769287109375 2 509.769448 1017.52434 0.23228 0.00011841 -0.10431 -5.3173E-05 0.12797 6.5236E-05 509.76934417009096 44.311 0.47075 47.824 47.563 48.034 3.5132 40 33 2 0 0 0 0.42249 1 8403 8403 6.7232 2.7788 1 75763 4247 3115 2695 2699 5307 5307 0.016282857834198694 DTPGFIVNR 9 Unmodified _DTPGFIVNR_ 0 0 0 ENST00000510728.5_1_4:108948819-108949120:+|nuORF;ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH ENST00000510728.5_1_4:108948819-108949120:+|nuORF ENST00000510728.5_1_4:108948819-108949120:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 509.769448 1017.52434 0.24113 0.00012292 -0.25914 -0.0001321 -0.018012 -9.1818E-06 509.7691997302883 43.962 0.22336 47.723 47.574 47.798 3.7617 -0.10705 -4.5449E-05 NaN 6.7232 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 80682 4248 3115 2695 2699 0.016282857834198694 DTPGFIVNR 9 Unmodified _DTPGFIVNR_ 0 0 0 ENST00000510728.5_1_4:108948819-108949120:+|nuORF;ENSG00000138796|ENST00000309522|HADH;nc|ENSG00000138796|Q16836-3|HADH;nc|ENSG00000138796|Q16836-2|HADH ENST00000510728.5_1_4:108948819-108949120:+|nuORF ENST00000510728.5_1_4:108948819-108949120:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 509.769448 1017.52434 0.19703 0.00010044 -0.49948 -0.00025462 -0.30244 -0.00015418 509.76915068077477 44.307 0.3793 47.944 47.644 48.023 3.6372 0.11363 -0.00029049 NaN 6.7232 31 24 2 NaN NaN NaN NaN 0 NaN NaN 0 59428 4249 3115 2695 2699 0.016282857834198694 DTQKHTHHT 9 Unmodified _DTQKHTHHT_ 0 0 0 L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 552.762939453125 2 552.762686 1103.51082 -0.19576 -0.00010821 0.45447 0.00025121 0.25871 0.000143 552.7629294562975 13.723 0.42332 13.723 13.581 14.004 0 97 47 3 0 0 0 0.49187 1 504 504 1.4819 0 1 123470 4250 12885 2696 2700 5308 5308 -0.03679571995803599 DTQLTKRV 8 Unmodified _DTQLTKRV_ 0 0 0 ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1;nc|ENSG00000080709|Q9H2S1-2|KCNN2;nc|ENSG00000080709|Q9H2S1|KCNN2;ENSG00000080709|ENST00000673685|KCNN2 ENSG00000105642|ENST00000684775|KCNN1 ENSG00000105642|ENST00000684775|KCNN1 MULTI-MSMS UPN47_class_I_Rep_3 4 480.77691650390625 2 480.777274 959.539994 -0.78867 -0.00037918 0.20784 9.9926E-05 -0.58083 -0.00027925 480.7772661360955 13.376 0.25423 16.749 16.666 16.92 3.3734 49 30 3 0 0 0 0.82752 1 328 328 2.0598 0 1 62211 4251 1749 2697 2701 5309 5309 0.05860572300480271 DTRWHKTH 8 Unmodified _DTRWHKTH_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS UPN47_class_I_Rep_2 3 540.768310546875 2 540.770314 1079.52608 NaN NaN NaN NaN NaN NaN NaN 53.985 1 57.303 56.803 57.803 3.3187 0 0 0 0.40501 1 12168 12168 3.9444 0.3479 1 + 4252 20221 2698 2702 5310 5310 -0.010506604079637327 DTSEIAQHFY 10 Unmodified _DTSEIAQHFY_ 0 0 0 REV__Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|11|2|sense REV__Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 605.7728271484375 2 605.772385 1209.53022 0.27957 0.00016935 0.26383 0.00015982 0.5434 0.00032918 605.772628057495 50.655 0.75138 54.284 53.905 54.657 3.6285 60 33 3 0 0 0 0.40227 1 11063 11063 19.257 1.122 1 232770 + 4253 17363 2699 2703 5311 5311 -0.06616660495569704 DTSFEVEEE 9 Unmodified _DTSFEVEEE_ 0 0 0 REV__ENSG00000188647|ENST00000340434|PTAR1 REV__ENSG00000188647|ENST00000340434|PTAR1 MSMS UPN46_class_I_Rep_3 1 542.7306518554688 2 542.719484 1083.42441 NaN NaN NaN NaN NaN NaN NaN 24.789 1 24.789 24.289 25.289 0 0 0 0 0.38639 1 3305 3305 3.9444 1.6417 1 + 4254 20978 2700 2704 5312 5312 -0.11396041131683887 DTSGGTTALR 10 Unmodified _DTSGGTTALR_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN48_class_I_Rep_1 5 489.7461242675781 2 489.74617 977.477788 0.27483 0.0001346 -0.51799 -0.00025369 -0.24316 -0.00011909 489.7458231434187 18.497 0.37251 22.028 21.719 22.092 3.5313 75 47 2 0 0 0 0.42663 1 1254 1254 17.443 5.202 1 60577 4255 4341 2701 2705 5313 5313 -0.011851988385274126 DTSGGTTALR 10 Unmodified _DTSGGTTALR_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MSMS UPN48_class_I_Rep_2 6 489.7459411621094 2 489.74617 977.477788 NaN NaN NaN NaN NaN NaN NaN 18.052 1 21.704 21.204 22.204 3.6518 0 0 0 0.53105 1 1149 1149 4.5289 1.2476 1 4256 4341 2701 2705 5314 5314 -0.011851988385274126 DTSGGTTALR 10 Unmodified _DTSGGTTALR_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN48_class_I_Rep_3 7 489.7460632324219 2 489.74617 977.477788 0.11947 5.8511E-05 -0.4072 -0.00019942 -0.28772 -0.00014091 489.74592435930816 18.173 0.66199 21.761 21.467 22.129 3.5874 122 83 2 0 0 0 0.46742 1 1133 1133 14.405 2.1647 1 63329 4257 4341 2701 2705 5315 5315 -0.011851988385274126 DTTVCVLAL 9 Unmodified _DTTVCVLAL_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 467.7491455078125 2 467.749336 933.484119 0.11055 5.1709E-05 -0.35002 -0.00016372 -0.23947 -0.00011201 467.7490847832125 61.867 0.82968 65.235 64.903 65.733 3.3681 100 61 2 0 0 0 0.12799 1 14551 14551 28.487 0 1 275300 4258 4821 2702 2706 5316 5316 0.014716030686258819 DTTVCVLAL 9 Unmodified _DTTVCVLAL_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 467.7490539550781 2 467.749336 933.484119 0.03976 1.8598E-05 -0.20988 -9.8171E-05 -0.17012 -7.9573E-05 467.74911459041726 62.083 0.88501 65.343 65.005 65.89 3.2594 117 60 3 0 0 0 0.060667 1 14635 14635 44.407 0 1 365340 4259 4821 2702 2706 5317 5317 0.014716030686258819 DTTVCVLAL 9 Unmodified _DTTVCVLAL_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6 ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 467.74908447265625 2 467.749336 933.484119 -0.093053 -4.3526E-05 -0.093179 -4.3585E-05 -0.18623 -8.711E-05 467.7491903075755 62.165 0.789 65.331 64.979 65.768 3.1667 127 54 3 0 0 0 0.090595 2 14764 14636;14764 36.044 0 1 333390 4260 4821 2702 2706 5318;5319 5319 0.014716030686258819 DTTVLKLGQL 10 Unmodified _DTTVLKLGQL_ 0 0 0 Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|3|1|sense;Tigger1_dup12040|chr22:42236720-42238835:-|1.816684674273148|0.0592468615635602|4.94|151.0|30|2|sense Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|3|1|sense Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.3214721679688 2 544.321514 1086.62847 -0.39744 -0.00021634 -0.30771 -0.00016749 -0.70515 -0.00038383 544.3214081054433 16.881 0.98203 20.243 19.847 20.829 3.3619 204 111 2 0 0 0 0.56354 1 1070 1070 1.3295 0 1 102120 4261 33012 2703 2707 5320 5320 0.08862567820256118 DTTYRMGGD 9 Unmodified _DTTYRMGGD_ 0 0 0 L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|27|2|sense L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|27|2|sense L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|27|2|sense MSMS UPN47_class_I_Rep_3 4 508.21209716796875 2 508.211106 1014.40766 NaN NaN NaN NaN NaN NaN NaN 24.925 1 28.276 27.776 28.776 3.3509 0 0 0 0.38639 1 3423 3423 3.9444 1.3669 1 4262 9666 2704 2708 5321 5321 -0.09896820498624948 DTVAQITQR 9 Unmodified _DTVAQITQR_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN48_class_I_Rep_2 6 516.2760009765625 2 516.277638 1030.54072 NaN NaN NaN NaN NaN NaN NaN 31.418 1 35.059 34.559 35.559 3.641 0 0 0 0.39036 1 4723 4723 2.9952 0 1 4263 5535 2705 2709 5322 5322 0.026673669495039576 DTVAQITQR 9 Unmodified _DTVAQITQR_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN48_class_I_Rep_2 6 516.2979125976562 2 516.277638 1030.54072 NaN NaN NaN NaN NaN NaN NaN 31.606 1 35.247 34.747 35.747 3.641 0 0 0 0.3824 1 4775 4775 4.897 0.56777 1 4264 5535 2705 2709 5323 5323 0.026673669495039576 DTVAQITQR 9 Unmodified _DTVAQITQR_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN48_class_I_Rep_2 6 516.277587890625 2 516.277638 1030.54072 NaN NaN NaN NaN NaN NaN NaN 31.628 1 35.269 34.769 35.769 3.641 0 0 0 0.38073 1 4782 4782 5.2969 0 1 4265 5535 2705 2709 5324 5324 0.026673669495039576 DTVAQITQR 9 Unmodified _DTVAQITQR_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN48_class_I_Rep_3 7 516.2779541015625 2 516.277638 1030.54072 NaN NaN NaN NaN NaN NaN NaN 31.273 1 34.974 34.474 35.474 3.7015 0 0 0 0.3967 1 4606 4606 1.4819 0 1 4266 5535 2705 2709 5325 5325 0.026673669495039576 DTVAQITQR 9 Unmodified _DTVAQITQR_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN48_class_I_Rep_3 7 516.2776489257812 2 516.277638 1030.54072 NaN NaN NaN NaN NaN NaN NaN 31.481 1 35.183 34.683 35.683 3.7015 0 0 0 0.3824 1 4665 4665 4.897 0 1 4267 5535 2705 2709 5326 5326 0.026673669495039576 DTVIEIRR 8 Unmodified _DTVIEIRR_ 0 0 0 L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.2909851074219 2 501.290548 1000.56654 0.28905 0.0001449 0.30748 0.00015414 0.59653 0.00029903 501.29058868648235 78.369 0.41473 78.369 78.014 78.429 0 85 49 3 0 0 0 0.82752 1 18350 18350 4.756 0 1 269910 4268 13345 2706 2710 5327 5327 0.06628261191815454 DTVIEIRR 8 Unmodified _DTVIEIRR_ 0 0 0 L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 501.290548 1000.56654 0.28905 0.0001449 0.30748 0.00015414 0.59653 0.00029903 501.29058868648235 78.369 0.41473 78.369 78.014 78.429 0 -0.088864 -0.00011195 NaN 4.756 85 49 3 NaN NaN NaN NaN 0 NaN NaN 0 269910 4269 13345 2706 2710 0.06628261191815454 DTVIEIRR 8 Unmodified _DTVIEIRR_ 0 0 0 L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|14|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 501.290548 1000.56654 0.28691 0.00014383 1.0538 0.00052826 1.3407 0.00067209 501.29091810751993 74.957 0.39809 78.547 78.258 78.656 3.59 0.088864 0.0006363 NaN 4.756 68 47 2 NaN NaN NaN NaN 0 NaN NaN 0 183590 4270 13345 2706 2710 0.06628261191815454 DTVRSLVRA 9 Unmodified _DTVRSLVRA_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MSMS UPN46_class_I_Rep_3 1 508.7874450683594 2 508.795998 1015.57744 NaN NaN NaN NaN NaN NaN NaN 33.243 1 33.243 32.743 33.743 0 0 0 0 0.38916 1 5791 5791 3.2813 0 1 + 4271 20583 2707 2711 5328 5328 0.07027663566100273 DTWYIYDQY 9 Unmodified _DTWYIYDQY_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MSMS UPN47_class_I_Rep_2 3 633.7682495117188 2 633.769311 1265.52407 NaN NaN NaN NaN NaN NaN NaN 58.667 1 61.949 61.449 62.449 3.2818 0 0 0 0.37692 1 13598 13598 6.2058 0.47393 1 + 4272 17789 2708 2712 5329 5329 -0.09807178727101018 DTWYVGFH 8 Unmodified _DTWYVGFH_ 0 0 0 MER115_dup776|chr4:139141108-139141702:-|1.9990198275433355|0.0741672413982378|4.75|150.0|23|3|sense MER115_dup776|chr4:139141108-139141702:-|1.9990198275433355|0.0741672413982378|4.75|150.0|23|3|sense MER115_dup776|chr4:139141108-139141702:-|1.9990198275433355|0.0741672413982378|4.75|150.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 512.729736328125 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 24.054 1 27.784 27.284 28.284 3.7298 0 0 0 0.40738 1 3080 3080 0.79363 0 1 4273 15775 2709 2713 5330 5330 -0.06575361170712313 DTYDCIVMF 9 Unmodified _DTYDCIVMF_ 0 0 0 L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|366|3|anti-sense L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|366|3|anti-sense L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|366|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.7300415039062 2 553.730286 1105.44602 NaN NaN NaN NaN NaN NaN NaN 86.045 1 89.815 89.315 90.315 3.7701 0 0 0 0.24828 1 20425 20425 13.508 0.97634 1 4274 13597 2710 2714 5331 5331 -0.1024865090835192 DTYEEYFY 8 Unmodified _DTYEEYFY_ 0 0 0 REV__L1M2_dup3307|chr6:41989953-41990660:+|1.635766268727052|0.0221851921853543|6.2|151.0|37|2|anti-sense REV__L1M2_dup3307|chr6:41989953-41990660:+|1.635766268727052|0.0221851921853543|6.2|151.0|37|2|anti-sense MSMS UPN47_class_I_Rep_2 3 565.2238159179688 2 565.221662 1128.42877 NaN NaN NaN NaN NaN NaN NaN 41.824 1 45.189 44.689 45.689 3.3655 0 0 0 0.40625 1 8467 8467 2.3027 0.65011 1 + 4275 24196 2711 2715 5332 5332 -0.13030531918138877 DTYIRRWQ 8 Unmodified _DTYIRRWQ_ 0 0 0 REV__L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|168|1|anti-sense REV__L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|168|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.2928466796875 2 569.293622 1136.57269 NaN NaN NaN NaN NaN NaN NaN 115.73 1 119.38 118.88 119.88 3.6433 0 0 0 0.40746 1 27544 27544 0.69038 0 1 + 4276 27400 2712 2716 5333 5333 0.009867794233286986 DTYYFSKY 8 Unmodified _DTYYFSKY_ 0 0 0 REV__L1PA7_dup10877|chr13:48021640-48024949:+|1.8678087694689045|0.0949236729657191|4.3|151.0|60|2|sense REV__L1PA7_dup10877|chr13:48021640-48024949:+|1.8678087694689045|0.0949236729657191|4.3|151.0|60|2|sense MSMS UPN47_class_I_Rep_1 2 543.7432861328125 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 29.238 1 32.996 32.496 33.496 3.7578 0 0 0 0.40625 1 4616 4616 2.3027 0.24298 1 + 4277 29984 2713 2717 5334 5334 -0.06873931438940417 DVAAVAAAVPF 11 Unmodified _DVAAVAAAVPF_ 0 0 0 REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|138|2|anti-sense REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7818603515625 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 59.698 1 63.184 62.684 63.684 3.4868 0 0 0 0.38417 1 13119 13119 5.7319 0.50118 1 + 4278 25281 2714 2718 5335 5335 0.03590340585992635 DVAFSVNHLL 10 Unmodified _DVAFSVNHLL_ 0 0 0 ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;ENSG00000174851|ENST00000376901|YIF1A ENST00000474986.2_1_11:66054976-66056456:-|nuORF ENST00000474986.2_1_11:66054976-66056456:-|nuORF MSMS UPN48_class_I_Rep_3 7 557.799072265625 2 557.798206 1113.58186 NaN NaN NaN NaN NaN NaN NaN 57.451 1 60.982 60.482 61.482 3.5317 0 0 0 0.53105 1 12359 12359 4.897 0.95262 1 4279 4696 2715 2719 5336 5336 0.029611279890104925 DVAGAEALLDR 11 Unmodified _DVAGAEALLDR_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS UPN48_class_I_Rep_2 6 565.295654296875 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 53.407 1 57.016 56.516 57.516 3.6098 0 0 0 0.35042 1 11190 11190 8.9762 4.0792 1 4280 5383 2716 2720 5337 5337 0.018356187754079656 DVAISLTTV 9 Unmodified _DVAISLTTV_ 0 0 0 ENSG00000126062|ENST00000266025|TMEM115 ENSG00000126062|ENST00000266025|TMEM115 ENSG00000126062|ENST00000266025|TMEM115 MULTI-SECPEP UPN48_class_I_Rep_1 5 459.2546081542969 2 459.760758 917.506963 0.12074 5.5514E-05 -1.7034 -0.00078316 -1.5827 -0.00072765 459.76066805946755 66.694 0.076614 70.145 70.073 70.149 3.4516 5 4 2 0 0 0 0.11705 1 15271 15271 6.7232 0 1 38201 4281 2526 2717 2721 5338 5338 0.0449094545774642 DVAISLTTV 9 Unmodified _DVAISLTTV_ 0 0 0 ENSG00000126062|ENST00000266025|TMEM115 ENSG00000126062|ENST00000266025|TMEM115 ENSG00000126062|ENST00000266025|TMEM115 MULTI-SECPEP UPN48_class_I_Rep_1 5 459.2545166015625 2 459.760758 917.506963 0.11852 5.4491E-05 -1.2084 -0.00055557 -1.0899 -0.00050108 459.7605911288197 66.844 0.28989 70.295 70.163 70.453 3.4516 21 16 2 0 0 0 0.12321 1 15338 15338 3.9444 2.2918 1 92711 4282 2526 2717 2721 5339 5339 0.0449094545774642 DVALVRRPA 9 Unmodified _DVALVRRPA_ 0 0 0 REV__ENST00000581193.5_1_18:3262441-3262750:+|nuORF REV__ENST00000581193.5_1_18:3262441-3262750:+|nuORF MSMS UPN47_class_I_Rep_2 3 498.8011474609375 2 498.801083 995.587613 NaN NaN NaN NaN NaN NaN NaN 33.429 1 36.868 36.368 37.368 3.4398 0 0 0 0.39518 1 5920 5920 1.8442 1.0506 1 + 4283 23128 2718 2722 5340 5340 0.08964271291324621 DVASVIVTKL 10 Unmodified _DVASVIVTKL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN48_class_I_Rep_1 5 522.8187866210938 2 522.818607 1043.62266 0.37339 0.00019522 -0.26487 -0.00013848 0.10852 5.6737E-05 522.8183959559657 65.953 0.83624 69.405 69.042 69.878 3.4516 130 55 3 0 0 0 0.12692 3 15063 14978;15023;15063 71.708 29.752 1 1018900 4284 1535 2719 2723 5341;5342;5343 5343 0.10259469308630287 DVASVIVTKL 10 Unmodified _DVASVIVTKL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN48_class_I_Rep_2 6 522.8186645507812 2 522.818607 1043.62266 0.40722 0.0002129 -0.22918 -0.00011982 0.17804 9.3082E-05 522.8183934867207 65.787 0.77742 69.273 68.955 69.732 3.4866 137 55 3 0 0 0 0.15375 4 15006 14923;14965;15006;15048 65.474 27.298 1 700740 4285 1535 2719 2723 5344;5345;5346;5347 5346 0.10259469308630287 DVASVIVTKL 10 Unmodified _DVASVIVTKL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN48_class_I_Rep_3 7 522.818603515625 2 522.818607 1043.62266 0.45419 0.00023746 -0.35248 -0.00018428 0.10171 5.3174E-05 522.8183494502226 65.71 0.79327 69.218 68.857 69.65 3.5077 125 53 3 0 0 0 0.21352 4 14885 14805;14846;14885;14929 51.415 16.483 1 742450 4286 1535 2719 2723 5348;5349;5350;5351 5350 0.10259469308630287 DVDIRKDLY 9 Unmodified _DVDIRKDLY_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000169067|ENST00000423391|ACTBL2 ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN47_class_I_Rep_2 3 568.799560546875 2 568.800946 1135.58734 0.18625 0.00010594 0.45153 0.00025683 0.63779 0.00036277 568.8013024977321 44.554 0.41402 47.909 47.691 48.105 3.3555 41 31 2 0 0 0 0.46869 1 9303 9303 3.9444 0.66309 1 57625 4287 1146 2720 2724 5352 5352 0.024968067808231353 DVDIRKDLY 9 Unmodified _DVDIRKDLY_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000169067|ENST00000423391|ACTBL2 ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MSMS UPN47_class_I_Rep_3 4 568.8016357421875 2 568.800946 1135.58734 NaN NaN NaN NaN NaN NaN NaN 44.644 1 47.888 47.388 48.388 3.2441 0 0 0 0.28608 1 9382 9382 11.495 5.2889 1 4288 1146 2720 2724 5353 5353 0.024968067808231353 DVDKKLGVF 9 Unmodified _DVDKKLGVF_ 0 0 0 REV__CON__Q8BGZ7 REV__CON__Q8BGZ7 MULTI-MSMS UPN47_class_I_Rep_1 2 510.7897033691406 2 510.78985 1019.56515 0.21737 0.00011103 0.027235 1.3911E-05 0.2446 0.00012494 510.7897546533304 56.352 0.59808 59.809 59.503 60.101 3.4572 76 31 3 0 0 0 0.30034 1 12880 12880 13.906 0 1 276820 + + 4289 17483 2721 2725 5354 5354 0.05614627103057046 DVDKKLGVF 9 Unmodified _DVDKKLGVF_ 0 0 0 REV__CON__Q8BGZ7 REV__CON__Q8BGZ7 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 510.78985 1019.56515 0.21737 0.00011103 0.027235 1.3911E-05 0.2446 0.00012494 510.7897546533304 56.352 0.59808 59.809 59.503 60.101 3.4572 -0.11356 0.00017744 NaN 13.906 76 31 3 NaN NaN NaN NaN 0 NaN NaN 0 276820 + + 4290 17483 2721 2725 0.05614627103057046 DVDKKLGVF 9 Unmodified _DVDKKLGVF_ 0 0 0 REV__CON__Q8BGZ7 REV__CON__Q8BGZ7 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 510.78985 1019.56515 0.20826 0.00010638 -0.24611 -0.00012571 -0.03785 -1.9334E-05 510.78960832949923 56.765 0.52202 59.937 59.634 60.156 3.1721 0.014301 -0.0001018 NaN 13.906 58 37 2 NaN NaN NaN NaN 0 NaN NaN 0 275430 + + 4291 17483 2721 2725 0.05614627103057046 DVDTALSFY 9 Unmodified _DVDTALSFY_ 0 0 0 nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1 nc|ENSG00000107745|Q9BPX6-5|MICU1 nc|ENSG00000107745|Q9BPX6-5|MICU1 MSMS UPN47_class_I_Rep_1 2 515.749267578125 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 48.48 1 52.162 51.662 52.662 3.6819 0 0 0 0.34056 1 10462 10462 8.5933 2.2392 1 4292 1830 2722 2726 5355 5355 -0.048062353015666304 DVDVLLLLS 9 Unmodified _DVDVLLLLS_ 0 0 0 nc|ENSG00000198825|Q9Y2H2-4|INPP5F;ENSG00000198825|ENST00000650623|INPP5F nc|ENSG00000198825|Q9Y2H2-4|INPP5F nc|ENSG00000198825|Q9Y2H2-4|INPP5F MULTI-MSMS UPN48_class_I_Rep_1 5 493.7918395996094 2 493.792058 985.569563 0.1866 9.2142E-05 -0.018775 -9.2708E-06 0.16783 8.2871E-05 493.79191632431065 82.85 0.32574 86.437 86.18 86.506 3.5871 62 35 3 0 0 0 0.23293 1 19779 19779 18.146 0 1 303080 4293 5468 2723 2727 5356 5356 0.07620091525961925 DVEDDSKGS 9 Unmodified _DVEDDSKGS_ 0 0 0 REV__nc|ENSG00000163359|P12111-4|COL6A3 REV__nc|ENSG00000163359|P12111-4|COL6A3 MSMS UPN48_class_I_Rep_2 6 476.197998046875 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 41.991 1 45.749 45.249 46.249 3.7579 0 0 0 0.38478 1 7724 7724 4.3292 0.73274 1 + 4294 17464 2724 2728 5357 5357 -0.09429177100366815 DVEDDSKGS 9 Unmodified _DVEDDSKGS_ 0 0 0 REV__nc|ENSG00000163359|P12111-4|COL6A3 REV__nc|ENSG00000163359|P12111-4|COL6A3 MSMS UPN48_class_I_Rep_3 7 476.19854736328125 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 42.233 1 45.875 45.375 46.375 3.6415 0 0 0 0.38478 1 7716 7716 4.3292 0.73274 1 + 4295 17464 2724 2728 5358 5358 -0.09429177100366815 DVEHATVVL 9 Unmodified _DVEHATVVL_ 0 0 0 REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 491.7631530761719 2 491.763832 981.513111 0.18814 9.2521E-05 -0.15194 -7.4718E-05 0.036201 1.7802E-05 491.76371394710225 44.33 0.64513 48.092 47.817 48.462 3.7617 81 46 2 0 0 0 0.32219 1 8384 8384 12.532 0.89125 1 232050 + 4296 22918 2725 2729 5359 5359 0.02161463689287757 DVEHATVVL 9 Unmodified _DVEHATVVL_ 0 0 0 REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 491.763832 981.513111 0.18814 9.2521E-05 -0.15194 -7.4718E-05 0.036201 1.7802E-05 491.76371394710225 44.33 0.64513 48.092 47.817 48.462 3.7617 -0.023614 0.00014845 NaN 12.532 81 46 2 NaN NaN NaN NaN 0 NaN NaN 0 232050 + 4297 22918 2725 2729 0.02161463689287757 DVEHLFLCLF 10 Unmodified _DVEHLFLCLF_ 0 0 0 L1MA2_dup6363|chr14:49705852-49707197:-|1.1045649980709562|0.0975369739235728|3.5|151.0|61|1|anti-sense;L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|163|2|anti-sense L1MA2_dup6363|chr14:49705852-49707197:-|1.1045649980709562|0.0975369739235728|3.5|151.0|61|1|anti-sense L1MA2_dup6363|chr14:49705852-49707197:-|1.1045649980709562|0.0975369739235728|3.5|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_2 3 618.3086547851562 2 618.310092 1234.60563 NaN NaN NaN NaN NaN NaN NaN 19.532 1 22.928 22.428 23.428 3.3963 0 0 0 0.53105 1 1857 1857 1.6526 0 1 4298 9287 2726 2730 5360 5360 -0.002287745688818177 DVEINAELFKA 11 Unmodified _DVEINAELFKA_ 0 0 0 REV__L1MB5_dup7707|chr16:47168687-47170432:-|4.037314283542957|0.2228874249086833|4.18|151.0|64|3|sense REV__L1MB5_dup7707|chr16:47168687-47170432:-|4.037314283542957|0.2228874249086833|4.18|151.0|64|3|sense MSMS UPN48_class_I_Rep_2 6 624.8280029296875 2 624.82716 1247.63977 NaN NaN NaN NaN NaN NaN NaN 58.175 1 61.673 61.173 62.173 3.4987 0 0 0 0.38417 1 12648 12648 4.1895 0 1 + 4299 26099 2727 2731 5361 5361 0.02585345123748084 DVEQVKKQHS 10 Unmodified _DVEQVKKQHS_ 0 0 0 nc|ENSG00000099365|P61266-2|STX1B;ENSG00000099365|ENST00000215095|STX1B nc|ENSG00000099365|P61266-2|STX1B nc|ENSG00000099365|P61266-2|STX1B MSMS UPN47_class_I_Rep_3 4 599.3176879882812 2 599.314751 1196.61495 NaN NaN NaN NaN NaN NaN NaN 45.508 1 48.752 48.252 49.252 3.2441 0 0 0 0.53105 1 9649 9649 1.1933 0.23107 1 4300 1440 2728 2732 5362 5362 0.024507100410573912 DVFGEGLPTRL 11 Unmodified _DVFGEGLPTRL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MSMS UPN48_class_I_Rep_1 5 602.3215942382812 2 602.322045 1202.62954 NaN NaN NaN NaN NaN NaN NaN 68.638 1 72.09 71.59 72.59 3.4517 0 0 0 0.35862 1 15864 15864 8.4443 4.2548 1 4301 1994 2729 2733 5363 5363 0.03632782189174577 DVFGEGLPTRL 11 Unmodified _DVFGEGLPTRL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN48_class_I_Rep_2 6 602.8235473632812 2 602.322045 1202.62954 0.49337 0.00029717 -0.063753 -3.84E-05 0.42962 0.00025877 602.3218561769612 68.415 0.24474 71.923 71.802 72.047 3.5083 32 24 2 0 0 0 0.33748 2 15765 15765;15809 12.175 5.073 1 81998 4302 1994 2729 2733 5364;5365 5364 0.03632782189174577 DVFGEGLPTRL 11 Unmodified _DVFGEGLPTRL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-SECPEP UPN48_class_I_Rep_3 7 602.7859497070312 2 602.322045 1202.62954 0.60089 0.00036193 0.27208 0.00016388 0.87297 0.00052581 602.321956316054 68.304 0.13403 71.813 71.749 71.883 3.5094 16 12 2 0 0 0 22.551 1 15664 15664 10.899 6.7095 1 72453 4303 1994 2729 2733 5366 5366 0.03632782189174577 DVFGQATAVLR 11 Unmodified _DVFGQATAVLR_ 0 0 0 nc|ENSG00000160570|Q8WXF8-2|DEDD2;ENSG00000160570|ENST00000596251|DEDD2 nc|ENSG00000160570|Q8WXF8-2|DEDD2 nc|ENSG00000160570|Q8WXF8-2|DEDD2 MSMS UPN48_class_I_Rep_2 6 588.8228149414062 2 588.822212 1175.62987 NaN NaN NaN NaN NaN NaN NaN 63.427 1 66.901 66.401 67.401 3.4738 0 0 0 0.38417 1 14259 14259 3.8763 0.27984 1 4304 3878 2730 2734 5367 5367 0.049082019090292306 DVFHCYYTR 9 Unmodified _DVFHCYYTR_ 0 0 0 REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|123|1|anti-sense REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|123|1|anti-sense MSMS UPN48_class_I_Rep_2 6 602.26513671875 2 602.266216 1202.51788 NaN NaN NaN NaN NaN NaN NaN 111.79 1 115.46 114.96 115.96 3.6666 0 0 0 0.39428 1 26603 26603 2.0598 0.21551 1 + 4305 25317 2731 2735 5368 5368 -0.07527975439620604 DVFIPKPFR 9 Unmodified _DVFIPKPFR_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP;ENST00000442013.1_1_20:6181997-6182240:-|nuORF ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-SECPEP UPN48_class_I_Rep_1 5 559.3119506835938 2 559.821484 1117.62842 0.49905 0.00027938 3.2275 0.0018068 3.7265 0.0020862 559.821613433587 54.474 0.12112 57.988 57.944 58.065 3.5143 12 9 2 0 0 0 0.12281 1 11550 11550 4.3292 1.0479 1 85310 4306 2344 2732 2736 5369 5369 0.07430612610937715 DVFIPKPFR 9 Unmodified _DVFIPKPFR_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP;ENST00000442013.1_1_20:6181997-6182240:-|nuORF ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MSMS UPN48_class_I_Rep_3 7 559.82177734375 2 559.821484 1117.62842 NaN NaN NaN NaN NaN NaN NaN 54.372 1 57.941 57.441 58.441 3.5694 0 0 0 0.22485 1 11424 11424 14.838 5.4551 1 4307 2344 2732 2736 5370 5370 0.07430612610937715 DVFKTRTM 8 Unmodified _DVFKTRTM_ 0 0 0 L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense MSMS UPN47_class_I_Rep_1 2 499.260498046875 2 499.260402 996.506251 NaN NaN NaN NaN NaN NaN NaN 27.884 1 31.65 31.15 32.15 3.7662 0 0 0 0.40472 1 4217 4217 4.3292 0 1 4308 13204 2733 2737 5371 5371 0.007858275370722367 DVFKTRTM 8 Unmodified _DVFKTRTM_ 0 0 0 L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense MSMS UPN47_class_I_Rep_1 2 499.2606201171875 2 499.260402 996.506251 NaN NaN NaN NaN NaN NaN NaN 28.015 1 31.781 31.281 32.281 3.7662 0 0 0 0.40472 1 4254 4254 4.3292 0 1 4309 13204 2733 2737 5372 5372 0.007858275370722367 DVFKTRTM 8 Unmodified _DVFKTRTM_ 0 0 0 L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.26055908203125 2 499.260402 996.506251 -0.42637 -0.00021287 0.26437 0.00013199 -0.162 -8.0879E-05 499.2606129979333 28.175 1.1319 31.509 30.963 32.095 3.3337 153 95 2 0 0 0 0.82752 1 4526 4526 1.8442 1.0506 1 76349 4310 13204 2733 2737 5373 5373 0.007858275370722367 DVFPGPSFR 9 Unmodified _DVFPGPSFR_ 0 0 0 nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 MULTI-MSMS UPN48_class_I_Rep_1 5 511.2584533691406 2 511.258717 1020.50288 0.28531 0.00014587 -0.063477 -3.2453E-05 0.22184 0.00011342 511.25851150103955 55.026 0.82902 58.534 58.195 59.024 3.5082 124 54 3 0 0 0 0.19147 1 11702 11702 21.537 3.402 1 405020 4311 992 2734 2738 5374 5374 -0.006550992452844184 DVFPGPSFR 9 Unmodified _DVFPGPSFR_ 0 0 0 nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 MULTI-MSMS UPN48_class_I_Rep_2 6 511.2586975097656 2 511.258717 1020.50288 0.43974 0.00022482 -0.30399 -0.00015542 0.13575 6.9402E-05 511.25850903414295 55.009 0.77288 58.565 58.216 58.989 3.5559 99 45 3 0 0 0 0.26468 1 11640 11640 16.149 3.6176 1 524380 4312 992 2734 2738 5375 5375 -0.006550992452844184 DVFPGPSFR 9 Unmodified _DVFPGPSFR_ 0 0 0 nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 MULTI-MSMS UPN48_class_I_Rep_3 7 511.25860595703125 2 511.258717 1020.50288 0.16595 8.4842E-05 -0.010069 -5.1479E-06 0.15588 7.9694E-05 511.2586036592338 54.943 0.83911 58.512 58.147 58.986 3.5694 112 48 3 0 0 0 0.26468 1 11578 11578 16.149 3.6176 1 480700 4313 992 2734 2738 5376 5376 -0.006550992452844184 DVFPPCKIID 10 Unmodified _DVFPPCKIID_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS UPN48_class_I_Rep_1 5 573.796875 2 573.796817 1145.57908 NaN NaN NaN NaN NaN NaN NaN 51.287 1 54.812 54.312 55.312 3.5246 0 0 0 0.53105 1 10562 10562 2.7352 0.43246 1 4314 3056 2735 2739 5377 5377 0.012115365398130962 DVFRDPALK 9 Unmodified _DVFRDPALK_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS UPN48_class_I_Rep_1 5 530.7930297851562 2 530.792924 1059.57129 0.35197 0.00018682 -0.21412 -0.00011365 0.13785 7.3167E-05 530.7927827138412 38.774 0.92535 42.279 41.997 42.923 3.5048 190 83 3 0 0 0 0.095207 6 6813 6695;6733;6771;6813;6850;6901 34.932 11.182 1 668340 4315 2712 2736 2740 5378;5379;5380;5381;5382;5383 5381 0.04389145334539535 DVFRDPALK 9 Unmodified _DVFRDPALK_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS UPN48_class_I_Rep_2 6 530.7929077148438 2 530.792924 1059.57129 0.38208 0.00020281 -0.23109 -0.00012266 0.151 8.0147E-05 530.7927695449496 38.535 0.90546 42.252 41.906 42.812 3.7164 231 92 3 0 0 0 0.079935 8 6727 6639;6651;6689;6727;6764;6798;6840;6891 38.615 13.215 1 732170 4316 2712 2736 2740 5384;5385;5386;5387;5388;5389;5390;5391 5387 0.04389145334539535 DVFRDPALK 9 Unmodified _DVFRDPALK_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS UPN48_class_I_Rep_3 7 530.79296875 2 530.792924 1059.57129 0.40931 0.00021726 -0.21959 -0.00011656 0.18973 0.0001007 530.7927543109329 38.622 1.0677 42.282 41.936 43.003 3.6595 216 98 3 0 0 0 0.10956 8 6663 6563;6590;6628;6663;6697;6733;6772;6809 32.037 6.6382 1 694570 4317 2712 2736 2740 5392;5393;5394;5395;5396;5397;5398;5399 5395 0.04389145334539535 DVFRDPALKR 10 Unmodified _DVFRDPALKR_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS UPN48_class_I_Rep_1 5 406.2314147949219 3 406.231412 1215.67241 -0.086876 -3.5292E-05 0.0072379 2.9402E-06 -0.079638 -3.2352E-05 406.2313733151024 33.028 1.3692 36.554 36.185 37.554 3.5266 370 145 4 0 0 0 0.21646 9 5068 5033;5068;5102;5137;5175;5209;5245;5282;5320 42.068 34.591 1 1241800 4318 2712 2737 2741 5400;5401;5402;5403;5404;5405;5406;5407;5408 5401 0.07319597037235326 DVFRDPALKR 10 Unmodified _DVFRDPALKR_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS UPN48_class_I_Rep_2 6 406.2313232421875 3 406.231412 1215.67241 0.069901 2.8396E-05 0.85943 0.00034913 0.92933 0.00037752 406.23170831421345 33.953 0.37197 37.614 37.368 37.74 3.6607 53 40 2 0 0 0 0.5617 1 5442 5442 2.6312 0.54523 1 102680 4319 2712 2737 2741 5409 5409 0.07319597037235326 DVFRDPALKR 10 Unmodified _DVFRDPALKR_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS UPN48_class_I_Rep_3 7 406.23138427734375 3 406.231412 1215.67241 -0.0018475 -7.5052E-07 -0.12106 -4.9177E-05 -0.12291 -4.9928E-05 406.23134002040985 32.847 1.3165 36.536 36.103 37.42 3.6896 408 149 4 0 0 0 0.30183 9 5052 4959;4992;5020;5052;5084;5118;5152;5187;5221 32.616 27.214 1 1157400 4320 2712 2737 2741 5410;5411;5412;5413;5414;5415;5416;5417;5418 5413 0.07319597037235326 DVFRDPALKR 10 Unmodified _DVFRDPALKR_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-SECPEP UPN48_class_I_Rep_3 7 405.9323425292969 3 406.231412 1215.67241 0.00026284 1.0677E-07 0.52666 0.00021395 0.52693 0.00021405 406.231759727213 34.329 0.086884 38.009 37.96 38.047 3.6797 15 9 2 0 0 0 0.84575 1 5451 5451 3.3196 0.88486 1 53932 4321 2712 2737 2741 5419 5419 0.07319597037235326 DVFRDPALKR 10 Unmodified _DVFRDPALKR_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-SECPEP UPN48_class_I_Rep_3 7 405.9325866699219 3 406.231412 1215.67241 -0.00046496 -1.8888E-07 0.54613 0.00022186 0.54567 0.00022167 406.2316852255195 33.859 0.19563 37.539 37.41 37.605 3.6797 33 19 2 0 0 0 0.84575 1 5286 5286 3.0723 0.98626 1 65447 4322 2712 2737 2741 5420 5420 0.07319597037235326 DVFRDPALKR 10 Unmodified _DVFRDPALKR_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-SECPEP UPN48_class_I_Rep_3 7 405.9323425292969 3 406.231412 1215.67241 0.00037077 1.5062E-07 1.3143 0.00053391 1.3147 0.00053406 406.23220876793545 34.401 0.084965 38.08 38.039 38.124 3.6797 15 9 2 0 0 0 0.84575 1 5451 5451 3.3196 0.88486 1 42685 4323 2712 2737 2741 5421 5421 0.07319597037235326 DVFRPPQY 8 Unmodified _DVFRPPQY_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS UPN48_class_I_Rep_1 5 511.2598571777344 2 511.258717 1020.50288 0.28531 0.00014587 -0.063477 -3.2453E-05 0.22184 0.00011342 511.25851150103955 55.026 0.82902 58.534 58.195 59.024 3.5082 124 54 3 0 0 0 0.82752 5 11626 11626;11663;11740;11782;11824 18.135 5.8943 1 405020 4324 1563 2738 2742 5422;5423;5424;5425;5426 5422 -0.006550992452957871 DVFRPPQY 8 Unmodified _DVFRPPQY_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS UPN48_class_I_Rep_2 6 511.76055908203125 2 511.258717 1020.50288 0.43974 0.00022482 -0.30399 -0.00015542 0.13575 6.9402E-05 511.25850903414295 55.009 0.77288 58.565 58.216 58.989 3.5559 99 45 3 0 0 0 0.82752 4 11600 11600;11679;11728;11776 18.135 7.3111 1 524380 4325 1563 2738 2742 5427;5428;5429;5430 5427 -0.006550992452957871 DVFRPPQY 8 Unmodified _DVFRPPQY_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS UPN48_class_I_Rep_3 7 511.25872802734375 2 511.258717 1020.50288 0.16595 8.4842E-05 -0.010069 -5.1479E-06 0.15588 7.9694E-05 511.2586036592338 54.943 0.83911 58.512 58.147 58.986 3.5694 112 48 3 0 0 0 0.82752 4 11541 11541;11618;11657;11700 18.135 7.3111 1 480700 4326 1563 2738 2742 5431;5432;5433;5434 5431 -0.006550992452957871 DVFTEAELR 9 Unmodified _DVFTEAELR_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MSMS UPN48_class_I_Rep_1 5 540.27197265625 2 540.272021 1078.52949 NaN NaN NaN NaN NaN NaN NaN 51.796 1 55.319 54.819 55.819 3.5227 0 0 0 0.39036 1 10718 10718 2.9952 0.69251 1 4327 5587 2739 2743 5435 5435 -0.006634551446268233 DVFVVGTER 9 Unmodified _DVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-MSMS UPN48_class_I_Rep_1 5 511.2694091796875 2 511.269281 1020.52401 0.23392 0.0001196 -0.030131 -1.5405E-05 0.20379 0.00010419 511.2692102972912 45.217 0.99426 48.734 48.369 49.363 3.5162 158 70 3 0 0 0 0.0071659 7 8684 8606;8616;8647;8684;8761;8799;8845 114.19 70.328 1 1080100 4328 5791;4681 2740 2744 5436;5437;5438;5439;5440;5441;5442 5439 0.0145686606357458 DVFVVGTER 9 Unmodified _DVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MSMS UPN48_class_I_Rep_1 5 511.2694091796875 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 45.942 1 49.458 48.958 49.958 3.5162 0 0 0 0.34878 1 8915 8915 8.1555 3.2585 1 4329 5791;4681 2740 2744 5443 5443 0.0145686606357458 DVFVVGTER 9 Unmodified _DVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-MSMS UPN48_class_I_Rep_2 6 511.2693786621094 2 511.269281 1020.52401 0.23903 0.00012221 0.039208 2.0046E-05 0.27823 0.00014225 511.2691986796829 44.948 0.91304 48.709 48.348 49.261 3.7617 176 68 4 0 0 0 0.0071659 6 8630 8549;8590;8630;8703;8743;8778 114.19 64.253 1 1009200 4330 5791;4681 2740 2744 5444;5445;5446;5447;5448;5449 5446 0.0145686606357458 DVFVVGTER 9 Unmodified _DVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-MSMS UPN48_class_I_Rep_3 7 511.2689208984375 2 511.269281 1020.52401 0.21497 0.00010991 0.0012015 6.1429E-07 0.21617 0.00011052 511.2692394056476 45.126 0.9016 48.763 48.414 49.315 3.6371 151 60 3 0 0 0 0.0055879 9 8551 8508;8551;8591;8635;8674;8714;8721;8754;8773 103.82 61.984 1 983400 4331 5791;4681 2740 2744 5450;5451;5452;5453;5454;5455;5456;5457;5458 5451 0.0145686606357458 DVFVVGTER 9 Unmodified _DVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MSMS UPN48_class_I_Rep_3 7 511.270263671875 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 45.809 1 49.446 48.946 49.946 3.6369 0 0 0 0.29913 1 8814 8814 10.8 2.0541 1 4332 5791;4681 2740 2744 5459 5459 0.0145686606357458 DVFVVGTER 9 Unmodified _DVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MSMS UPN48_class_I_Rep_3 7 511.3739318847656 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 45.855 1 49.492 48.992 49.992 3.6369 0 0 0 0.34878 1 8826 8826 8.1555 1.4324 1 4333 5791;4681 2740 2744 5460 5460 0.0145686606357458 DVFVVGTERGR 11 Unmodified _DVFVVGTERGR_ 0 0 0 ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MSMS UPN48_class_I_Rep_1 5 617.8314819335938 2 617.830569 1233.64658 NaN NaN NaN NaN NaN NaN NaN 37.36 1 40.867 40.367 41.367 3.507 0 0 0 0.38417 1 6346 6346 2.4985 1.0166 1 4334 5791 2741 2745 5461 5461 0.03910702794973986 DVFVVGTERGR 11 Unmodified _DVFVVGTERGR_ 0 0 0 ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MSMS UPN48_class_I_Rep_2 6 617.8303833007812 2 617.830569 1233.64658 NaN NaN NaN NaN NaN NaN NaN 37.095 1 40.797 40.297 41.297 3.7021 0 0 0 0.38417 1 6310 6310 4.5289 1.7937 1 4335 5791 2741 2745 5462 5462 0.03910702794973986 DVFVVGTERGR 11 Unmodified _DVFVVGTERGR_ 0 0 0 ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MSMS UPN48_class_I_Rep_3 7 617.8310546875 2 617.830569 1233.64658 NaN NaN NaN NaN NaN NaN NaN 37.062 1 40.725 40.225 41.225 3.663 0 0 0 0.38417 1 6203 6203 4.5289 0.58447 1 4336 5791 2741 2745 5463 5463 0.03910702794973986 DVFWLPLLE 9 Unmodified _DVFWLPLLE_ 0 0 0 nc|ENSG00000142330|Q9HC96-6|CAPN10;nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10 nc|ENSG00000142330|Q9HC96-6|CAPN10 nc|ENSG00000142330|Q9HC96-6|CAPN10 MSMS UPN47_class_I_Rep_2 3 566.309326171875 2 566.307875 1130.6012 NaN NaN NaN NaN NaN NaN NaN 99.269 1 102.76 102.26 103.26 3.4897 0 0 0 0.39518 1 24310 24310 1.8442 0.6509 1 4337 3247 2742 2746 5464 5464 0.04112084279904593 DVFYLQPER 9 Unmodified _DVFYLQPER_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|1|intron nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN48_class_I_Rep_1 5 583.7960205078125 2 583.795663 1165.57677 NaN NaN NaN NaN NaN NaN NaN 54.21 1 57.724 57.224 58.224 3.5143 0 0 0 0.093407 1 11455 11455 26.021 12.115 1 4338 3438;3461 2743 2747 5465 5465 0.0006082412637624657 DVFYLQPER 9 Unmodified _DVFYLQPER_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|1|intron nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN48_class_I_Rep_1 5 583.7966918945312 2 583.795663 1165.57677 NaN NaN NaN NaN NaN NaN NaN 54.402 1 57.916 57.416 58.416 3.5143 0 0 0 0.21052 1 11515 11515 15.739 6.3555 1 4339 3438;3461 2743 2747 5466 5466 0.0006082412637624657 DVFYLQPER 9 Unmodified _DVFYLQPER_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|1|intron nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS UPN48_class_I_Rep_2 6 583.7951049804688 2 583.795663 1165.57677 0.57197 0.00033391 -0.37195 -0.00021714 0.20002 0.00011677 583.7954855928882 54.192 0.36669 57.774 57.53 57.896 3.5817 32 21 2 0 0 0 0.14474 3 11400 11400;11408;11449 26.021 15.197 1 108310 4340 3438;3461 2743 2747 5467;5468;5469 5467 0.0006082412637624657 DVFYLQPER 9 Unmodified _DVFYLQPER_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|1|intron nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN48_class_I_Rep_3 7 583.7960815429688 2 583.795663 1165.57677 NaN NaN NaN NaN NaN NaN NaN 54.074 1 57.643 57.143 58.143 3.5694 0 0 0 0.093407 1 11332 11332 26.021 10.174 1 4341 3438;3461 2743 2747 5470 5470 0.0006082412637624657 DVFYLQPER 9 Unmodified _DVFYLQPER_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|1|intron nc|ENSG00000147130|Q14202-2|ZMYM3;nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN48_class_I_Rep_3 7 583.79638671875 2 583.795663 1165.57677 NaN NaN NaN NaN NaN NaN NaN 54.201 1 57.771 57.271 58.271 3.5694 0 0 0 0.093407 1 11372 11372 26.021 12.115 1 4342 3438;3461 2743 2747 5471 5471 0.0006082412637624657 DVGFLLFH 8 Unmodified _DVGFLLFH_ 0 0 0 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 MULTI-MSMS UPN47_class_I_Rep_3 4 474.28204345703125 2 474.252903 946.491253 -0.82978 -0.00039353 0.59036 0.00027998 -0.23942 -0.00011354 474.2526968318347 15.371 0.15653 18.737 18.604 18.76 3.3659 17 15 2 0 0 0 0.82752 1 745 745 0.79363 0 1 16393 4343 16718 2744 2748 5472 5472 0.01586703731391026 DVGFLLFH 8 Unmodified _DVGFLLFH_ 0 0 0 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 MULTI-MATCH UPN47_class_I_Rep_1 2 2 474.252903 946.491253 -0.38813 -0.00018407 -0.477 -0.00022622 -0.86513 -0.00041029 474.2523388938717 15.236 0.17662 18.733 18.649 18.826 3.4968 0.0048401 -0.00018719 NaN 0.79363 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 20558 4344 16718 2744 2748 0.01586703731391026 DVGFLLFH 8 Unmodified _DVGFLLFH_ 0 0 0 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 474.252903 946.491253 -0.28643 -0.00013584 -0.37137 -0.00017612 -0.6578 -0.00031196 474.2523403929129 15.329 0.26158 18.715 18.614 18.876 3.3864 -0.01333 -8.6999E-05 NaN 0.79363 42 31 2 NaN NaN NaN NaN 0 NaN NaN 0 17333 4345 16718 2744 2748 0.01586703731391026 DVGFLLFH 8 Unmodified _DVGFLLFH_ 0 0 0 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-3|SLC37A3 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 474.252903 946.491253 -0.82978 -0.00039353 0.59036 0.00027998 -0.23942 -0.00011354 474.2526968318347 15.371 0.15653 18.737 18.604 18.76 3.3659 0.0084899 0.00082521 NaN 0.79363 17 15 2 NaN NaN NaN NaN 0 NaN NaN 0 16393 4346 16718 2744 2748 0.01586703731391026 DVGHALYFV 9 Unmodified _DVGHALYFV_ 0 0 0 REV__L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|64|1|anti-sense REV__L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7804870605469 2 510.761092 1019.50763 NaN NaN NaN NaN NaN NaN NaN 51.586 1 55.18 54.68 55.68 3.5932 0 0 0 0.39428 1 11412 11412 2.0598 0 1 + 4347 30658 2745 2749 5473 5473 -0.001342151025255589 DVGLRQWGF 9 Unmodified _DVGLRQWGF_ 0 0 0 L1PA5_dup8335|chr11:76091835-76094762:-|2.6906181005615157|0.0939536765230958|4.84|151.0|143|2|anti-sense L1PA5_dup8335|chr11:76091835-76094762:-|2.6906181005615157|0.0939536765230958|4.84|151.0|143|2|anti-sense L1PA5_dup8335|chr11:76091835-76094762:-|2.6906181005615157|0.0939536765230958|4.84|151.0|143|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 539.1627197265625 2 539.277441 1076.54033 0.35718 0.00019262 -2.4461 -0.0013191 -2.0889 -0.0011265 539.2756960466827 48.088 0.15772 51.61 51.512 51.67 3.5219 11 9 2 0 0 0 0.12034 1 9582 9582 7.2892 0.93513 1 56246 4348 14514 2746 2750 5474 5474 0.005119920203242145 DVGNYYLNEL 10 Unmodified _DVGNYYLNEL_ 0 0 0 REV__ENST00000377653.2_1_9:39174468-39266986:-|nuORF REV__ENST00000377653.2_1_9:39174468-39266986:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 600.2825927734375 2 600.282586 1198.55062 0.48818 0.00029305 -0.10911 -6.5498E-05 0.37907 0.00022755 600.2824411359198 58.646 0.64317 62.169 61.889 62.532 3.5231 75 42 2 0 0 0 0.43106 1 12705 12705 17.113 17.113 1 240860 + 4349 18338 2747 2751 5475 5475 -0.040714898357464335 DVHLAKLKE 9 Unmodified _DVHLAKLKE_ 0 0 0 REV__nc|ENSG00000185551|P24468-3|NR2F2 REV__nc|ENSG00000185551|P24468-3|NR2F2 MSMS UPN47_class_I_Rep_2 3 526.7978515625 2 526.808574 1051.60259 NaN NaN NaN NaN NaN NaN NaN 29.244 1 32.736 32.236 33.236 3.4923 0 0 0 0.38639 1 4655 4655 3.9444 0.66309 1 + 4350 20565 2748 2752 5476 5476 0.07885718368675043 DVIIHLYTY 9 Unmodified _DVIIHLYTY_ 0 0 0 L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|32|3|sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|32|3|sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|32|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.802734375 2 568.802957 1135.59136 0.4787 0.00027229 -0.22816 -0.00012978 0.25054 0.00014251 568.8028674583929 72.315 0.60074 75.879 75.597 76.198 3.5645 84 57 2 0 0 0 0.26948 1 16911 16911 15.847 1.0089 1 210930 4351 11087 2749 2753 5477 5477 0.028988962745415847 DVIIHLYTY 9 Unmodified _DVIIHLYTY_ 0 0 0 L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|32|3|sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|32|3|sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|32|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 568.802957 1135.59136 0.50936 0.00028973 -0.33365 -0.00018978 0.17571 9.9945E-05 568.8027303826098 72.225 0.35179 75.752 75.55 75.902 3.5266 -0.099212 -0.00010393 NaN 15.847 59 36 2 NaN NaN NaN NaN 0 NaN NaN 0 143610 4352 11087 2749 2753 0.028988962745415847 DVIIKNNL 8 Unmodified _DVIIKNNL_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;GNAI1|p.D350Ifs*12|1|0.26|ENSG00000127955|chr7:80217472-80217472|A/-|frameshift_variant;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS UPN47_class_I_Rep_1 2 464.77606201171875 2 464.776742 927.538931 -0.23614 -0.00010975 -0.49265 -0.00022897 -0.72879 -0.00033872 464.77641612160124 43.44 0.70941 47.127 46.834 47.543 3.6875 80 40 3 0 0 0 0.82752 2 8926 8926;8983 32.305 3.2239 1 177780 4353 2075 2750 2754 5478;5479 5478 0.07226357931563143 DVIIKNNL 8 Unmodified _DVIIKNNL_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;GNAI1|p.D350Ifs*12|1|0.26|ENSG00000127955|chr7:80217472-80217472|A/-|frameshift_variant;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS UPN47_class_I_Rep_2 3 464.7763671875 2 464.776742 927.538931 -0.29005 -0.00013481 -0.18365 -8.5357E-05 -0.4737 -0.00022017 464.7765454444509 43.815 0.74585 47.173 46.815 47.561 3.358 79 40 3 0 0 0 0.82752 1 9074 9074 25.399 2.663 1 177100 4354 2075 2750 2754 5480 5480 0.07226357931563143 DVIIKNNL 8 Unmodified _DVIIKNNL_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;GNAI1|p.D350Ifs*12|1|0.26|ENSG00000127955|chr7:80217472-80217472|A/-|frameshift_variant;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS UPN47_class_I_Rep_3 4 464.77630615234375 2 464.776742 927.538931 -0.36408 -0.00016921 -0.18707 -8.6946E-05 -0.55115 -0.00025616 464.77656971916866 43.858 0.80376 47.1 46.764 47.568 3.2419 80 48 2 0 0 0 0.82752 2 9103 9103;9146 25.399 2.663 1 151440 4355 2075 2750 2754 5481;5482 5481 0.07226357931563143 DVIMHEVNTD 10 Unmodified _DVIMHEVNTD_ 0 0 0 REV__nc|ENSG00000158636|Q7Z589-6|EMSY REV__nc|ENSG00000158636|Q7Z589-6|EMSY MSMS UPN48_class_I_Rep_1 5 586.7643432617188 2 586.766245 1171.51794 NaN NaN NaN NaN NaN NaN NaN 29.361 1 32.911 32.411 33.411 3.5499 0 0 0 0.53105 1 4069 4069 1.3295 0.5359 1 + 4356 19849 2751 2755 5483 5483 -0.06096020230256727 DVIPPLTNI 9 Unmodified _DVIPPLTNI_ 0 0 0 REV__nc|ENSG00000005339|Q92793-2|CREBBP REV__nc|ENSG00000005339|Q92793-2|CREBBP MSMS UPN48_class_I_Rep_2 6 491.2991027832031 2 491.2844 980.554247 NaN NaN NaN NaN NaN NaN NaN 106.93 1 110.61 110.11 111.11 3.6783 0 0 0 0.39598 1 25268 25268 1.6526 0.85899 1 + 4357 17528 2752 2756 5484 5484 0.06319224728747486 DVIRLKQEQH 10 Unmodified _DVIRLKQEQH_ 0 0 0 ENSG00000183943|ENST00000262848|PRKX ENSG00000183943|ENST00000262848|PRKX ENSG00000183943|ENST00000262848|PRKX MSMS UPN47_class_I_Rep_3 4 633.3693237304688 2 633.351668 1264.68878 NaN NaN NaN NaN NaN NaN NaN 87.406 1 90.793 90.293 91.293 3.3873 0 0 0 0.53105 1 21900 21900 2.9952 1.5133 1 4358 5030 2753 2757 5485 5485 0.0670267820337358 DVISNINITR 10 Unmodified _DVISNINITR_ 0 0 0 ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5 ENST00000491144.5_1_3:183853173-183855624:+|nuORF ENST00000491144.5_1_3:183853173-183855624:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 572.8202514648438 2 572.81967 1143.62479 0.41636 0.0002385 -0.22865 -0.00013097 0.18771 0.00010752 572.8195648473343 51.798 0.38972 55.321 55.035 55.424 3.5227 50 38 2 0 0 0 0.21533 4 10687 10643;10687;10714;10728 43.477 27.738 1 146510 4359 3385 2754 2758 5486;5487;5488;5489 5487 0.05871898046393653 DVISNINITR 10 Unmodified _DVISNINITR_ 0 0 0 ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5 ENST00000491144.5_1_3:183853173-183855624:+|nuORF ENST00000491144.5_1_3:183853173-183855624:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 573.3218994140625 2 572.81967 1143.62479 0.49265 0.0002822 -0.01824 -1.0448E-05 0.47441 0.00027175 572.8194592697615 51.591 0.39765 55.259 55.065 55.463 3.6679 53 40 2 0 0 0 0.26492 4 10648 10603;10643;10648;10689 37.251 22.294 1 147330 4360 3385 2754 2758 5490;5491;5492;5493 5492 0.05871898046393653 DVISNINITR 10 Unmodified _DVISNINITR_ 0 0 0 ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5 ENST00000491144.5_1_3:183853173-183855624:+|nuORF ENST00000491144.5_1_3:183853173-183855624:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 572.8199462890625 2 572.81967 1143.62479 0.34417 0.00019715 0.29775 0.00017056 0.64193 0.00036771 572.8197845842145 51.692 0.34022 55.302 55.132 55.472 3.6105 51 35 2 0 0 0 0.31276 1 10630 10630 29.281 14.324 1 321160 4361 3385 2754 2758 5494 5494 0.05871898046393653 DVIVRLCESM 10 Unmodified _DVIVRLCESM_ 0 0 0 REV__ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|4|intron REV__ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|4|intron MULTI-MSMS UPN47_class_I_Rep_1 2 582.7907104492188 2 582.791209 1163.56787 0.063354 3.6922E-05 -0.048351 -2.8179E-05 0.015002 8.7433E-06 582.791191213256 43.963 0.70819 47.658 47.371 48.079 3.6951 82 45 2 0 0 0 0.52083 2 9179 9026;9179 9.3831 4.0862 1 153210 + 4362 20207 2755 2759 5495;5496 5496 -0.007376088259661628 DVIVRLCESM 10 Unmodified _DVIVRLCESM_ 0 0 0 REV__ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|4|intron REV__ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|4|intron MULTI-MSMS UPN47_class_I_Rep_2 3 582.80859375 2 582.791209 1163.56787 0.17589 0.00010251 -0.039268 -2.2885E-05 0.13662 7.9623E-05 582.7911883733705 44.388 0.69897 47.744 47.406 48.105 3.3556 63 48 2 0 0 0 0.56354 1 9161 9161 1.3295 0 1 146240 + 4363 20207 2755 2759 5497 5497 -0.007376088259661628 DVKGRIYQL 9 Unmodified _DVKGRIYQL_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENSG00000010292|ENST00000315579|NCAPD2 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 546.3140869140625 2 546.314023 1090.61349 0.014 7.6483E-06 -0.085539 -4.6731E-05 -0.07154 -3.9083E-05 546.3139566018584 39.19 1.3577 42.855 42.471 43.828 3.6652 217 95 4 0 0 0 0.038999 8 7649 7564;7607;7649;7694;7737;7760;7779;7819 53.404 18.472 1 480290 4364 754 2756 2760 5498;5499;5500;5501;5502;5503;5504;5505 5500 0.07181120742939129 DVKGRIYQL 9 Unmodified _DVKGRIYQL_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENSG00000010292|ENST00000315579|NCAPD2 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 546.3139038085938 2 546.314023 1090.61349 0.018646 1.0186E-05 -0.0074861 -4.0897E-06 0.01116 6.0966E-06 546.3139627634628 39.537 1.2258 42.915 42.565 43.791 3.3785 163 77 3 0 0 0 0.066364 5 7809 7727;7770;7809;7846;7884 41.956 14.478 1 363280 4365 754 2756 2760 5506;5507;5508;5509;5510 5508 0.07181120742939129 DVKGRIYQL 9 Unmodified _DVKGRIYQL_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENSG00000010292|ENST00000315579|NCAPD2 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 546.3140869140625 2 546.314023 1090.61349 -0.048328 -2.6402E-05 0.077428 4.23E-05 0.0291 1.5898E-05 546.3140130042954 39.731 1.3714 42.969 42.577 43.948 3.2379 194 90 3 0 0 0 0.12096 8 7901 7822;7864;7901;7943;7987;8028;8095;8163 29.841 11.694 1 407630 4366 754 2756 2760 5511;5512;5513;5514;5515;5516;5517;5518 5513 0.07181120742939129 DVKIHTKYQ 9 Unmodified _DVKIHTKYQ_ 0 0 0 L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|40|3|sense L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|40|3|sense L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.3112182617188 2 566.31148 1130.60841 0.024574 1.3916E-05 -0.29685 -0.00016811 -0.27227 -0.00015419 566.311414264965 42.668 0.43042 46.355 46.118 46.548 3.6875 49 28 2 0 0 0 0.49187 1 8706 8706 1.4819 0 1 54887 4367 13893 2757 2761 5519 5519 0.04832816880320934 DVKKKVHL 8 Unmodified _DVKKKVHL_ 0 0 0 ENST00000550224.5_1_12:57137757-57139879:-|nuORF;ENSG00000198056|ENST00000338193|PRIM1 ENST00000550224.5_1_12:57137757-57139879:-|nuORF ENST00000550224.5_1_12:57137757-57139879:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 484.23284912109375 2 483.808377 965.6022 -0.36841 -0.00017824 -0.13558 -6.5594E-05 -0.50399 -0.00024383 483.80797712827547 14.95 0.21817 18.425 18.326 18.545 3.475 53 24 3 0 0 0 0.72333 1 673 673 7.9102 2.6795 1 58293 4368 5406 2758 2762 5520 5520 0.11802343439467222 DVKKKVHL 8 Unmodified _DVKKKVHL_ 0 0 0 ENST00000550224.5_1_12:57137757-57139879:-|nuORF;ENSG00000198056|ENST00000338193|PRIM1 ENST00000550224.5_1_12:57137757-57139879:-|nuORF ENST00000550224.5_1_12:57137757-57139879:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 483.808377 965.6022 -0.72995 -0.00035316 0.19527 9.4474E-05 -0.53468 -0.00025868 483.808340260897 15.116 0.30503 18.482 18.365 18.67 3.3659 0.021496 0.00033105 NaN 7.9102 49 33 2 NaN NaN NaN NaN 0 NaN NaN 0 32736 4369 5406 2758 2762 0.11802343439467222 DVKRKDFLA 9 Unmodified _DVKRKDFLA_ 0 0 0 ENSG00000154227|ENST00000679737|CERS3 ENSG00000154227|ENST00000679737|CERS3 ENSG00000154227|ENST00000679737|CERS3 MULTI-MSMS UPN47_class_I_Rep_2 3 546.3140258789062 2 546.314023 1090.61349 0.018646 1.0186E-05 -0.0074861 -4.0897E-06 0.01116 6.0966E-06 546.3139627634628 39.537 1.2258 42.915 42.565 43.791 3.3785 163 77 3 0 0 0 0.45441 1 7984 7984 4.897 0.95262 1 363280 4370 3664 2759 2763 5521 5521 0.07181120742961866 DVKRPGYR 8 Unmodified _DVKRPGYR_ 0 0 0 ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18 ENST00000434334.1_1_2:182559249-182559624:+|nuORF ENST00000434334.1_1_2:182559249-182559624:+|nuORF MSMS UPN47_class_I_Rep_1 2 495.7772521972656 2 495.777608 989.540663 NaN NaN NaN NaN NaN NaN NaN 20.198 1 23.81 23.31 24.31 3.6118 0 0 0 0.40625 1 1984 1984 2.3027 0 1 4371 3563 2760 2764 5522 5522 0.04547411740179541 DVKRPGYR 8 Unmodified _DVKRPGYR_ 0 0 0 ENST00000434334.1_1_2:182559249-182559624:+|nuORF;nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18 ENST00000434334.1_1_2:182559249-182559624:+|nuORF ENST00000434334.1_1_2:182559249-182559624:+|nuORF MSMS UPN47_class_I_Rep_2 3 495.7770690917969 2 495.777608 989.540663 NaN NaN NaN NaN NaN NaN NaN 20.48 1 23.887 23.387 24.387 3.4074 0 0 0 0.4044 1 2132 2132 4.756 0 1 4372 3563 2760 2764 5523 5523 0.04547411740179541 DVKTIHINL 9 Unmodified _DVKTIHINL_ 0 0 0 REV__L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|9|1|sense REV__L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 526.8087158203125 2 526.808574 1051.60259 NaN NaN NaN NaN NaN NaN NaN 29.107 1 32.599 32.099 33.099 3.4923 0 0 0 0.3967 1 4614 4614 1.4819 0 1 + 4373 27914 2761 2765 5524 5524 0.07885718368652306 DVKVKEKQ 8 Unmodified _DVKVKEKQ_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS UPN47_class_I_Rep_3 4 487.2870178222656 2 487.287474 972.560395 -0.58138 -0.0002833 0.65721 0.00032025 0.075837 3.6954E-05 487.28762401981726 22.371 0.56023 25.721 25.518 26.078 3.3496 61 50 2 0 0 0 0.82752 1 2679 2679 1.8442 0 1 45757 4374 3289 2762 2766 5525 5525 0.07301742960282809 DVKVKEKQ 8 Unmodified _DVKVKEKQ_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 487.287474 972.560395 -0.14271 -6.954E-05 0.18434 8.9828E-05 0.041635 2.0288E-05 487.2874682845578 22.251 0.39005 25.675 25.471 25.861 3.4241 -0.022892 -0.0002112 NaN 1.8442 53 40 2 NaN NaN NaN NaN 0 NaN NaN 0 45419 4375 3289 2762 2766 0.07301742960282809 DVKVYTVGP 9 Unmodified _DVKVYTVGP_ 0 0 0 nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1 nc|ENSG00000168781|Q6PFW1-6|PPIP5K1 nc|ENSG00000168781|Q6PFW1-6|PPIP5K1 MSMS UPN47_class_I_Rep_1 2 489.2677001953125 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 35.007 1 38.693 38.193 39.193 3.6859 0 0 0 0.37692 1 6370 6370 6.2058 0 1 4376 3408 2763 2767 5526 5526 0.03374651694673503 DVLGYYLFR 9 Unmodified _DVLGYYLFR_ 0 0 0 L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|61|3|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|61|3|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_1 5 573.302734375 2 573.303124 1144.5917 NaN NaN NaN NaN NaN NaN NaN 45.657 1 49.173 48.673 49.673 3.5162 0 0 0 0.36505 1 8828 8828 7.2892 1.5574 1 4377 8977 2764 2768 5527 5527 0.025183159943708233 DVLIKRWPP 9 Unmodified _DVLIKRWPP_ 0 0 0 nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000513190.1_1_3:129233175-129239105:+|nuORF nc|ENSG00000163913|Q9HBG6-7|IFT122 nc|ENSG00000163913|Q9HBG6-7|IFT122 MULTI-MSMS UPN48_class_I_Rep_2 6 562.3351440429688 2 562.334759 1122.65496 0.49269 0.00027706 -0.45019 -0.00025316 0.042498 2.3898E-05 562.3343212586504 109.22 0.75874 112.89 112.81 113.57 3.6715 192 102 2 0 0 0 0.48643 1 25988 25988 2.0598 0 1 3580200 4378 4056 2765 2769 5528 5528 0.09854301502264207 DVLLGSTEY 9 Unmodified _DVLLGSTEY_ 0 0 0 ENST00000506489.1_1_1:205496975-205497827:+|nuORF;ENST00000468954.1_1_1:205497195-205498558:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18 ENST00000506489.1_1_1:205496975-205497827:+|nuORF ENST00000506489.1_1_1:205496975-205497827:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.747802734375 2 498.747847 995.481142 NaN NaN NaN NaN NaN NaN NaN 43.902 1 47.597 47.097 48.097 3.6951 0 0 0 0.35339 1 9075 9075 7.9102 3.1541 1 4379 956 2766 2770 5529 5529 -0.016779487845269614 DVLLGSTEY 9 Unmodified _DVLLGSTEY_ 0 0 0 ENST00000506489.1_1_1:205496975-205497827:+|nuORF;ENST00000468954.1_1_1:205497195-205498558:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18 ENST00000506489.1_1_1:205496975-205497827:+|nuORF ENST00000506489.1_1_1:205496975-205497827:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.74798583984375 2 498.747847 995.481142 NaN NaN NaN NaN NaN NaN NaN 43.935 1 47.63 47.13 48.13 3.6951 0 0 0 0.35339 1 9085 9085 7.9102 3.1541 1 4380 956 2766 2770 5530 5530 -0.016779487845269614 DVLLGSTEY 9 Unmodified _DVLLGSTEY_ 0 0 0 ENST00000506489.1_1_1:205496975-205497827:+|nuORF;ENST00000468954.1_1_1:205497195-205498558:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18 ENST00000506489.1_1_1:205496975-205497827:+|nuORF ENST00000506489.1_1_1:205496975-205497827:+|nuORF MSMS UPN47_class_I_Rep_2 3 498.7484436035156 2 498.747847 995.481142 NaN NaN NaN NaN NaN NaN NaN 44.185 1 47.54 47.04 48.04 3.3556 0 0 0 0.19137 1 9189 9189 16.942 4.4107 1 4381 956 2766 2770 5531 5531 -0.016779487845269614 DVLLGSTEY 9 Unmodified _DVLLGSTEY_ 0 0 0 ENST00000506489.1_1_1:205496975-205497827:+|nuORF;ENST00000468954.1_1_1:205497195-205498558:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18 ENST00000506489.1_1_1:205496975-205497827:+|nuORF ENST00000506489.1_1_1:205496975-205497827:+|nuORF MSMS UPN47_class_I_Rep_3 4 498.7478942871094 2 498.747847 995.481142 NaN NaN NaN NaN NaN NaN NaN 44.222 1 47.466 46.966 47.966 3.2441 0 0 0 0.35339 1 9253 9253 7.9102 2.6795 1 4382 956 2766 2770 5532 5532 -0.016779487845269614 DVLLNIKN 8 Unmodified _DVLLNIKN_ 0 0 0 REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|128|3|sense REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|128|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 464.77642822265625 2 464.776742 927.538931 -0.29005 -0.00013481 -0.18365 -8.5357E-05 -0.4737 -0.00022017 464.7765454444509 43.815 0.74585 47.173 46.815 47.561 3.358 79 40 3 0 0 0 0.82752 2 9026 9026;9123 21.747 0 1 177100 + 4383 30243 2767 2771 5533;5534 5533 0.07226357931563143 DVLLNIKN 8 Unmodified _DVLLNIKN_ 0 0 0 REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|128|3|sense REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|128|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 464.77655029296875 2 464.776742 927.538931 -0.36408 -0.00016921 -0.18707 -8.6946E-05 -0.55115 -0.00025616 464.77656971916866 43.858 0.80376 47.1 46.764 47.568 3.2419 80 48 2 0 0 0 0.82752 1 9201 9201 16.942 0 1 151440 + 4384 30243 2767 2771 5535 5535 0.07226357931563143 DVLNPFRI 8 Unmodified _DVLNPFRI_ 0 0 0 REV__ENSG00000010292|ENST00000315579|NCAPD2 REV__ENSG00000010292|ENST00000315579|NCAPD2 MSMS UPN47_class_I_Rep_1 2 487.30078125 2 487.276909 972.539266 NaN NaN NaN NaN NaN NaN NaN 61.483 1 64.857 64.357 65.357 3.3732 0 0 0 0.40625 1 14421 14421 2.3027 0 1 + 4385 17567 2768 2772 5536 5536 0.0518977765142381 DVLRFYKGEEW 11 Unmodified _DVLRFYKGEEW_ 0 0 0 L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|342|3|anti-sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|342|3|anti-sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|342|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.3369140625 3 481.241865 1440.70376 0.25244 0.00012149 -0.52257 -0.00025148 -0.27012 -0.00013 481.57581034820663 67.288 0.2562 70.785 70.674 70.93 3.4964 26 19 2 0 0 0 22.551 1 15447 15447 0.40827 0 1 91063 4386 15366 2769 2773 5537 5537 0.0010412528072265559 DVLYFNTK 8 Unmodified _DVLYFNTK_ 0 0 0 REV__L1M2_dup1948|chr4:9043455-9044608:-|1.1446298643957|0.1488464771303601|2.94|150.0|52|2|anti-sense REV__L1M2_dup1948|chr4:9043455-9044608:-|1.1446298643957|0.1488464771303601|2.94|150.0|52|2|anti-sense MSMS UPN47_class_I_Rep_3 4 499.8270263671875 2 500.260925 998.507297 NaN NaN NaN NaN NaN NaN NaN 114.79 1 118.27 117.77 118.77 3.4802 0 0 0 0.40643 1 28203 28203 2.0598 1.2661 1 + 4387 24185 2770 2774 5538 5538 0.007983651776271472 DVNKKIKNK 9 Unmodified _DVNKKIKNK_ 0 0 0 REV__nc|ENSG00000168234|Q8N584-2|TTC39C REV__nc|ENSG00000168234|Q8N584-2|TTC39C MULTI-MSMS UPN47_class_I_Rep_2 3 543.8348999023438 2 543.835123 1085.65569 0.014094 7.665E-06 -0.62453 -0.00033964 -0.61043 -0.00033197 543.8347870181221 13.877 0.19475 17.264 17.178 17.372 3.3871 32 22 2 0 0 0 0.50088 1 438 438 0.52476 0 1 30730 + 4388 20263 2771 2775 5539 5539 0.11629096151295926 DVNMKNMIVG 10 Unmodified _DVNMKNMIVG_ 0 0 0 REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|120|1|anti-sense REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|120|1|anti-sense MSMS UPN46_class_I_Rep_3 1 560.7757568359375 2 560.778102 1119.54165 NaN NaN NaN NaN NaN NaN NaN 57.071 1 57.071 56.571 57.571 0 0 0 0 0.53105 1 12485 12485 2.9952 0.41776 1 + 4389 27839 2772 2776 5540 5540 -0.013338779974674253 DVQESFIWVRY 11 Unmodified _DVQESFIWVRY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN48_class_I_Rep_1 5 481.24188232421875 3 481.241865 1440.70376 0.18899 9.0949E-05 -0.68125 -0.00032785 -0.49226 -0.0002369 481.2418246821232 67.367 0.15345 70.818 70.73 70.883 3.4516 13 10 2 0 0 0 0.65891 1 15479 15479 2.4348 1.22 1 72796 4390 5270 2773 2777 5541 5541 0.0010412528069991822 DVQESFIWVRY 11 Unmodified _DVQESFIWVRY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-SECPEP UPN48_class_I_Rep_2 6 481.33721923828125 3 481.241865 1440.70376 0.25345 0.00012197 -0.47509 -0.00022863 -0.22163 -0.00010666 481.24186032392964 67.128 0.049217 70.624 70.605 70.654 3.4964 6 3 2 0 0 0 22.551 1 15391 15391 5.8681 3.4334 1 65739 4391 5270 2773 2777 5542 5542 0.0010412528069991822 DVQKILRNA 9 Unmodified _DVQKILRNA_ 0 0 0 nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 nc|ENSG00000138614|Q96SY0-4|INTS14 MULTI-MSMS UPN47_class_I_Rep_2 3 528.8124389648438 2 528.811648 1055.60874 -0.20505 -0.00010843 0.33457 0.00017692 0.12952 6.8491E-05 528.8116305960244 28.396 0.45233 31.894 31.702 32.154 3.4986 53 37 2 0 0 0 0.49026 1 4415 4415 1.6526 0 1 49776 4392 3099 2774 2778 5543 5543 0.08316236600194316 DVQLVNTLHT 10 Unmodified _DVQLVNTLHT_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MSMS UPN46_class_I_Rep_3 1 570.3055419921875 2 570.306395 1138.59824 NaN NaN NaN NaN NaN NaN NaN 52.673 1 52.673 52.173 53.173 0 0 0 0 0.53105 1 11274 11274 2.4985 0.21571 1 4393 5028 2775 2779 5544 5544 0.034482091550898986 DVQNKERKKIL 11 Unmodified _DVQNKERKKIL_ 0 0 0 REV__L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|95|3|sense REV__L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|95|3|sense MSMS UPN48_class_I_Rep_1 5 457.60888671875 3 457.608659 1369.80415 NaN NaN NaN NaN NaN NaN NaN 92.32 1 95.946 95.446 96.446 3.626 0 0 0 0.38417 1 22185 22185 0.50596 0 1 + 4394 30227 2776 2780 5545 5545 0.13403782334376046 DVQTTKHLF 9 Unmodified _DVQTTKHLF_ 0 0 0 nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.R2604Kfs*18|1|0.08|ENSG00000163092|chr2:167249723-167249724|-/A|frameshift_variant nc|ENSG00000163092|A4UGR9-2|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS UPN48_class_I_Rep_1 5 544.7900390625 2 544.790381 1087.56621 NaN NaN NaN NaN NaN NaN NaN 26.412 1 29.979 29.479 30.479 3.5667 0 0 0 0.38784 1 3239 3239 3.5965 0 1 4395 3981 2777 2781 5546 5546 0.025928414719373905 DVQTVTVFF 9 Unmodified _DVQTVTVFF_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MSMS UPN47_class_I_Rep_2 3 528.2736206054688 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 65.085 1 68.34 67.84 68.84 3.2556 0 0 0 0.34878 1 15548 15548 8.1555 1.8014 1 4396 2551 2778 2782 5547 5547 0.008426343491009902 DVRKKKKKKN 10 Unmodified _DVRKKKKKKN_ 0 0 0 ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G ENSG00000117877|ENST00000309424|POLR1G ENSG00000117877|ENST00000309424|POLR1G MSMS UPN48_class_I_Rep_3 7 636.4158325195312 2 636.417146 1270.81974 NaN NaN NaN NaN NaN NaN NaN 76.852 1 80.454 79.954 80.954 3.6016 0 0 0 0.53105 1 18118 18118 0.40072 0 1 4397 2235 2779 2783 5548 5548 0.19516113642089294 DVRRLWWGF 9 Unmodified _DVRRLWWGF_ 0 0 0 REV__AluSz_dup92608|chr19:7416904-7417212:-|1.4389643099481015|0.0060862165389067|7.89|151.0|5|2|sense REV__AluSz_dup92608|chr19:7416904-7417212:-|1.4389643099481015|0.0060862165389067|7.89|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 618.3285522460938 2 617.827632 1233.64071 0.45044 0.00027829 -2.2142 -0.001368 -1.7638 -0.0010897 617.8261796015324 69.438 0.3001 72.643 72.417 72.717 3.2044 37 24 2 0 0 0 0.50015 1 16888 16888 0.6015 0.076735 1 60111 + 4398 17216 2780 2784 5549 5549 0.03323649073968227 DVRRVLLQAF 10 Unmodified _DVRRVLLQAF_ 0 0 0 nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1 nc|ENSG00000100324|Q15750-2|TAB1 nc|ENSG00000100324|Q15750-2|TAB1 MSMS UPN47_class_I_Rep_2 3 406.2491760253906 3 406.24354 1215.70879 NaN NaN NaN NaN NaN NaN NaN 100.62 1 104.12 103.62 104.62 3.5063 0 0 0 0.53105 1 24596 24596 1.5923 0 1 4399 1492 2781 2785 5550 5550 0.10956473933993038 DVRVSKSL 8 Unmodified _DVRVSKSL_ 0 0 0 REV__L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|181|3|anti-sense REV__L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|181|3|anti-sense MSMS UPN47_class_I_Rep_3 4 452.27838134765625 2 452.266542 902.51853 NaN NaN NaN NaN NaN NaN NaN 29.134 1 32.458 31.958 32.958 3.3235 0 0 0 0.40527 1 4667 4667 3.5965 1.2938 1 + 4400 27791 2782 2786 5551 5551 0.06337187271753919 DVSEEHKKL 9 Unmodified _DVSEEHKKL_ 0 0 0 ENSG00000111300|ENST00000261745|NAA25;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 MULTI-MSMS UPN47_class_I_Rep_3 4 542.7176513671875 2 542.785296 1083.55604 0.075436 4.0946E-05 0.1092 5.9275E-05 0.18464 0.00010022 542.7854163572229 42.612 0.43803 45.852 45.57 46.008 3.2394 38 27 2 0 0 0 0.47197 1 8787 8787 3.5965 0 1 71587 4401 1968 2783 2787 5552 5552 0.01760233746722406 DVSELHLYI 9 Unmodified _DVSELHLYI_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|430|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|430|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|430|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.7836303710938 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 28.484 1 32.226 31.726 32.726 3.7424 0 0 0 0.38478 1 3879 3879 4.3292 0.73274 1 4402 10395 2784 2788 5553 5553 0.014700193778026005 DVSHPIIYR 9 Unmodified _DVSHPIIYR_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS UPN48_class_I_Rep_1 5 550.2980346679688 2 550.298373 1098.58219 0.52824 0.00029069 -0.23792 -0.00013093 0.29032 0.00015976 550.2981486271614 34.342 0.40871 37.856 37.691 38.1 3.5144 50 37 2 0 0 0 0.35081 1 5501 5501 10.824 0 1 74362 4403 4399 2785 2789 5554 5554 0.03684547708849095 DVSHPIIYR 9 Unmodified _DVSHPIIYR_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS UPN48_class_I_Rep_2 6 550.2989501953125 2 550.298373 1098.58219 0.47634 0.00026213 0.057021 3.1378E-05 0.53336 0.00029351 550.2983722121742 34.134 0.39941 37.795 37.692 38.092 3.6607 57 45 2 0 0 0 0.36392 2 5444 5444;5481 10.074 2.7847 1 94142 4404 4399 2785 2789 5555;5556 5555 0.03684547708849095 DVSLPVPVSSH 11 Unmodified _DVSLPVPVSSH_ 0 0 0 L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|334|3|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|334|3|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|334|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.8004760742188 2 568.800946 1135.58734 0.064821 3.687E-05 0.25522 0.00014517 0.32004 0.00018204 568.8010486740887 44.218 0.37077 47.913 47.798 48.169 3.6951 35 23 2 0 0 0 0.48412 1 9162 9162 8.1555 0 1 65339 4405 14807 2786 2790 5557 5557 0.024968067808231353 DVSLPVPVSSH 11 Unmodified _DVSLPVPVSSH_ 0 0 0 L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|334|3|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|334|3|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|334|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 568.800946 1135.58734 0.064821 3.687E-05 0.25522 0.00014517 0.32004 0.00018204 568.8010486740887 44.218 0.37077 47.913 47.798 48.169 3.6951 0.0016044 -0.00012418 NaN 8.1555 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 65339 4406 14807 2786 2790 0.024968067808231353 DVSLYWATF 9 Unmodified _DVSLYWATF_ 0 0 0 REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF MSMS UPN47_class_I_Rep_2 3 551.2657470703125 2 551.266207 1100.51786 NaN NaN NaN NaN NaN NaN NaN 80.024 1 83.394 82.894 83.894 3.3694 0 0 0 0.13551 1 19939 19939 20.454 6.5476 1 + 4407 21916 2787 2791 5558 5558 -0.02837652167977467 DVSLYWATF 9 Unmodified _DVSLYWATF_ 0 0 0 REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF MSMS UPN47_class_I_Rep_2 3 551.2664184570312 2 551.266207 1100.51786 NaN NaN NaN NaN NaN NaN NaN 80.197 1 83.566 83.066 84.066 3.3694 0 0 0 0.089203 1 19976 19976 26.884 7.6267 1 + 4408 21916 2787 2791 5559 5559 -0.02837652167977467 DVSLYWATF 9 Unmodified _DVSLYWATF_ 0 0 0 REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 551.2666625976562 2 551.266207 1100.51786 0.46426 0.00025593 -0.36575 -0.00020163 0.098505 5.4303E-05 551.2658177565705 80.214 0.36348 83.523 83.264 83.628 3.309 59 45 2 0 0 0 0.15122 3 20095 20052;20063;20095 25.399 10.151 1 274540 + 4409 21916 2787 2791 5560;5561;5562 5562 -0.02837652167977467 DVSLYWATF 9 Unmodified _DVSLYWATF_ 0 0 0 REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 551.266207 1100.51786 0.44775 0.00024683 0.25281 0.00013937 0.70056 0.00038619 551.2656742591623 79.896 0.043755 83.362 83.326 83.369 3.465 -0.080986 0.00066652 NaN 25.399 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 130070 + 4410 21916 2787 2791 -0.02837652167977467 DVSLYWATF 9 Unmodified _DVSLYWATF_ 0 0 0 REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF REV__ENST00000366497.6_1_1:247582002-247582170:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 551.266207 1100.51786 0.46426 0.00025593 -0.36575 -0.00020163 0.098505 5.4303E-05 551.2658177565705 80.214 0.36348 83.523 83.264 83.628 3.309 0.080986 -1.5461E-05 NaN 25.399 59 45 2 NaN NaN NaN NaN 0 NaN NaN 0 274540 + 4411 21916 2787 2791 -0.02837652167977467 DVSQFVYPF 9 Unmodified _DVSQFVYPF_ 0 0 0 L1ME1_dup7866|chr4:54038881-54040201:+|3.017732131133119|0.2926427320538116|3.37|151.0|87|3|anti-sense L1ME1_dup7866|chr4:54038881-54040201:+|3.017732131133119|0.2926427320538116|3.37|151.0|87|3|anti-sense L1ME1_dup7866|chr4:54038881-54040201:+|3.017732131133119|0.2926427320538116|3.37|151.0|87|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 551.8428955078125 2 551.266207 1100.51786 0.48585 0.00026783 -0.091299 -5.033E-05 0.39455 0.0002175 551.2661025501047 77.169 0.31735 80.78 80.525 80.842 3.6116 43 30 2 0 0 0 0.42249 1 18202 18202 6.7232 0.99131 1 141260 4412 12437 2788 2792 5563 5563 -0.028376521679547295 DVSSVLHRI 9 Unmodified _DVSSVLHRI_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.291259765625 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 30.641 1 34.183 33.683 34.683 3.542 0 0 0 0.38784 1 4426 4426 3.5965 0 1 + 4413 26254 2789 2793 5564 5564 0.055242611917947215 DVSSVLHRI 9 Unmodified _DVSSVLHRI_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.2904052734375 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 30.884 1 34.426 33.926 34.926 3.542 0 0 0 0.37476 1 4497 4497 6.7232 1.4925 1 + 4414 26254 2789 2793 5565 5565 0.055242611917947215 DVSSVLHRI 9 Unmodified _DVSSVLHRI_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.291015625 2 513.290548 1024.56654 0.3385 0.00017375 -0.35216 -0.00018076 -0.01366 -7.0114E-06 513.2903472215866 30.71 0.48233 34.345 34.111 34.593 3.6351 94 51 2 0 0 0 0.31407 2 4513 4513;4556 13.042 6.4947 1 127710 + 4415 26254 2789 2793 5566;5567 5566 0.055242611917947215 DVSSVLHRI 9 Unmodified _DVSSVLHRI_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2903442382812 2 513.290548 1024.56654 0.21361 0.00010964 -0.27787 -0.00014263 -0.06426 -3.2984E-05 513.290424958306 30.526 0.52336 34.241 34.017 34.541 3.7146 101 61 2 0 0 0 0.28552 4 4432 4401;4432;4453;4468 14.838 8.1151 1 142310 + 4416 26254 2789 2793 5568;5569;5570;5571 5569 0.055242611917947215 DVSSVLHRI 9 Unmodified _DVSSVLHRI_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 513.290548 1024.56654 0.3385 0.00017375 -0.35216 -0.00018076 -0.01366 -7.0114E-06 513.2903472215866 30.71 0.48233 34.345 34.111 34.593 3.6351 0.052357 -4.2912E-05 NaN 14.838 94 51 2 NaN NaN NaN NaN 0 NaN NaN 0 127710 + 4417 26254 2789 2793 0.055242611917947215 DVSSVLHRI 9 Unmodified _DVSSVLHRI_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|35|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 513.290548 1024.56654 0.21361 0.00010964 -0.27787 -0.00014263 -0.06426 -3.2984E-05 513.290424958306 30.526 0.52336 34.241 34.017 34.541 3.7146 -0.052357 3.3354E-05 NaN 14.838 101 61 2 NaN NaN NaN NaN 0 NaN NaN 0 142310 + 4418 26254 2789 2793 0.055242611917947215 DVTELPVPL 9 Unmodified _DVTELPVPL_ 0 0 0 REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1 REV__nc|ENSG00000160117|Q8NAG6-1|ANKLE1 MSMS UPN48_class_I_Rep_3 7 491.77642822265625 2 491.776408 981.538263 NaN NaN NaN NaN NaN NaN NaN 63.997 1 67.505 67.005 68.005 3.5083 0 0 0 0.36505 1 14353 14353 7.2892 0.93513 1 + 4419 19879 2790 2794 5572 5572 0.04675518491865205 DVTFFGALK 9 Unmodified _DVTFFGALK_ 0 0 0 nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B nc|ENSG00000102524|Q9Y275-2|TNFSF13B nc|ENSG00000102524|Q9Y275-2|TNFSF13B MULTI-MSMS UPN48_class_I_Rep_1 5 499.2716064453125 2 499.271293 996.528032 0.28014 0.00013987 0.13001 6.4908E-05 0.41015 0.00020477 499.27136109342786 65.792 0.54698 69.243 68.989 69.536 3.4516 56 37 2 0 0 0 0.13244 3 14980 14938;14980;15030 27.629 11.782 1 191600 4420 1617 2791 2795 5573;5574;5575 5574 0.02962955557291025 DVTFFGALK 9 Unmodified _DVTFFGALK_ 0 0 0 nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B nc|ENSG00000102524|Q9Y275-2|TNFSF13B nc|ENSG00000102524|Q9Y275-2|TNFSF13B MULTI-MSMS UPN48_class_I_Rep_2 6 499.271728515625 2 499.271293 996.528032 0.31492 0.00015723 0.067636 3.3769E-05 0.38256 0.000191 499.2712711288103 65.679 0.52996 69.158 68.883 69.413 3.4792 62 38 2 0 0 0 0.23293 1 14979 14979 18.146 2.2992 1 154460 4421 1617 2791 2795 5576 5576 0.02962955557291025 DVTFFGALK 9 Unmodified _DVTFFGALK_ 0 0 0 nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B nc|ENSG00000102524|Q9Y275-2|TNFSF13B nc|ENSG00000102524|Q9Y275-2|TNFSF13B MULTI-MSMS UPN48_class_I_Rep_3 7 499.2713317871094 2 499.271293 996.528032 0.29423 0.0001469 -0.11355 -5.6693E-05 0.18068 9.0206E-05 499.2711560336766 65.553 0.48177 69.061 68.836 69.318 3.5077 53 30 2 0 0 0 0.23293 3 14782 14782;14823;14869 18.146 2.2992 1 201790 4422 1617 2791 2795 5577;5578;5579 5577 0.02962955557291025 DVTFQIKF 8 Unmodified _DVTFQIKF_ 0 0 0 REV__L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|190|3|anti-sense REV__L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|190|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 499.2715759277344 2 499.271293 996.528032 0.31492 0.00015723 0.067636 3.3769E-05 0.38256 0.000191 499.2712711288103 65.679 0.52996 69.158 68.883 69.413 3.4792 62 38 2 0 0 0 0.82752 2 14876 14876;14915 11.64 1.5664 1 154460 + 4423 29402 2792 2796 5580;5581 5580 0.029629555573023936 DVTHLPERK 9 Unmodified _DVTHLPERK_ 0 0 0 REV__L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|142|2|sense REV__L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|142|2|sense MSMS UPN48_class_I_Rep_3 7 547.787841796875 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 31.678 1 35.379 34.879 35.879 3.7015 0 0 0 0.38478 1 4721 4721 4.3292 0.38484 1 + 4424 29159 2793 2797 5582 5582 0.04495646220493654 DVTKVGVYL 9 Unmodified _DVTKVGVYL_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|20|2|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.784912109375 2 497.2844 992.554247 -0.4165 -0.00020712 0.54523 0.00027113 0.12873 6.4015E-05 497.2846650882357 29.309 0.84001 32.632 32.242 33.082 3.3235 133 71 2 0 0 0 0.48414 1 4836 4836 2.3027 0.24298 1 142510 + 4425 25257 2794 2798 5583 5583 0.057672247287769096 DVTQRLLL 8 Unmodified _DVTQRLLL_ 0 0 0 REV__L1MC4_dup19713|chr14:102648379-102648807:-|1.6049831298591033|0.0027895034835207|9.17|151.0|2|1|sense REV__L1MC4_dup19713|chr14:102648379-102648807:-|1.6049831298591033|0.0027895034835207|9.17|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2900085449219 2 479.290017 956.565481 -0.34499 -0.00016535 0.076945 3.6879E-05 -0.26804 -0.00012847 479.2901649217798 23.917 0.55603 27.647 27.456 28.012 3.7298 60 45 2 0 0 0 0.82752 1 3017 3017 0.79363 0 1 82325 + 4426 26852 2795 2799 5584 5584 0.08546046822914377 DVVLFLWKVW 10 Unmodified _DVVLFLWKVW_ 0 0 0 REV__L1PA5_dup10390|chr17:39346696-39347986:-|1.7943837539120848|0.1050971580318286|4.09|151.0|74|3|anti-sense REV__L1PA5_dup10390|chr17:39346696-39347986:-|1.7943837539120848|0.1050971580318286|4.09|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_2 6 435.5856628417969 3 435.584903 1303.73288 NaN NaN NaN NaN NaN NaN NaN 28.689 1 32.32 31.82 32.82 3.6311 0 0 0 0.53105 1 3977 3977 3.3196 0.88486 1 + 4427 29704 2796 2800 5585 5585 0.09316314367652012 DVVLVWLSF 9 Unmodified _DVVLVWLSF_ 0 0 0 L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|239|1|anti-sense L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|239|1|anti-sense L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|239|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.3026733398438 2 539.302593 1076.59063 -0.0022361 -1.2059E-06 -0.16378 -8.8326E-05 -0.16602 -8.9532E-05 539.3023803800278 33.193 0.70952 36.648 36.352 37.061 3.4547 82 54 2 0 0 0 0.48643 1 5793 5793 2.0598 0 1 106200 4428 14617 2797 2801 5586 5586 0.05540101625456373 DVVMLPSPSRP 11 Unmodified _DVVMLPSPSRP_ 0 0 0 REV__ENSG00000115274|ENST00000233331|INO80B REV__ENSG00000115274|ENST00000233331|INO80B MSMS UPN47_class_I_Rep_1 2 599.3163452148438 2 599.318448 1196.62234 NaN NaN NaN NaN NaN NaN NaN 44.767 1 48.467 47.967 48.967 3.6999 0 0 0 0.38417 1 9339 9339 0.96228 0.16864 1 + 4429 18552 2798 2802 5587 5587 0.031897263171231316 DVVQLIYL 8 Unmodified _DVVQLIYL_ 0 0 0 L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.7790832519531 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 21.397 1 25.04 24.54 25.54 3.6436 0 0 0 0.40604 1 2314 2314 2.5775 0 1 4430 10346 2799 2803 5588 5588 0.06612126217078185 DVVQLIYL 8 Unmodified _DVVQLIYL_ 0 0 0 L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.7794494628906 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 21.518 1 25.193 24.693 25.693 3.6749 0 0 0 0.40604 1 2348 2348 2.5775 0 1 4431 10346 2799 2803 5589 5589 0.06612126217078185 DVVQLIYL 8 Unmodified _DVVQLIYL_ 0 0 0 L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense L1MB3_dup1367|chr1:231263562-231264299:-|1.492384733799604|0.4461708860566977|1.74|150.0|45|3|anti-sense MSMS UPN47_class_I_Rep_3 4 481.7799072265625 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 22.792 1 26.142 25.642 26.642 3.3503 0 0 0 0.40604 1 2787 2787 2.5775 0 1 4432 10346 2799 2803 5590 5590 0.06612126217078185 DVVRRLNI 8 Unmodified _DVVRRLNI_ 0 0 0 nc|ENSG00000066629|O00423-3|EML1;ENSG00000066629|ENST00000262233|EML1;ENST00000556758.1_1_14:100317215-100349650:+|nuORF nc|ENSG00000066629|O00423-3|EML1 nc|ENSG00000066629|O00423-3|EML1 MULTI-MSMS UPN47_class_I_Rep_1 2 492.8006286621094 2 492.801083 983.587613 -0.16365 -8.0648E-05 -0.51821 -0.00025538 -0.68187 -0.00033603 492.8005514405583 43.837 0.76136 47.532 47.189 47.95 3.6951 89 45 3 0 0 0 0.82752 1 9077 9077 2.5775 0 1 120670 4433 1023 2800 2804 5591 5591 0.09516271291306566 DVVRRLNI 8 Unmodified _DVVRRLNI_ 0 0 0 nc|ENSG00000066629|O00423-3|EML1;ENSG00000066629|ENST00000262233|EML1;ENST00000556758.1_1_14:100317215-100349650:+|nuORF nc|ENSG00000066629|O00423-3|EML1 nc|ENSG00000066629|O00423-3|EML1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 492.801083 983.587613 -0.16365 -8.0648E-05 -0.51821 -0.00025538 -0.68187 -0.00033603 492.8005514405583 43.837 0.76136 47.532 47.189 47.95 3.6951 -0.012493 0.00025346 NaN 2.5775 89 45 3 NaN NaN NaN NaN 0 NaN NaN 0 120670 4434 1023 2800 2804 0.09516271291306566 DVVRRLNI 8 Unmodified _DVVRRLNI_ 0 0 0 nc|ENSG00000066629|O00423-3|EML1;ENSG00000066629|ENST00000262233|EML1;ENST00000556758.1_1_14:100317215-100349650:+|nuORF nc|ENSG00000066629|O00423-3|EML1 nc|ENSG00000066629|O00423-3|EML1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 492.801083 983.587613 0.011678 5.7549E-06 -0.92059 -0.00045367 -0.90891 -0.00044791 492.80046154463946 44.103 0.80711 47.458 47.223 48.03 3.3556 -0.0863 -0.00014312 NaN 2.5775 80 50 2 NaN NaN NaN NaN 0 NaN NaN 0 96027 4435 1023 2800 2804 0.09516271291306566 DVVSKFLNR 9 Unmodified _DVVSKFLNR_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;PPP1CB|p.H238P|1|0.11|ENSG00000213639|chr2:28788778-28788778|A/C|missense_variant ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_2 6 539.3059692382812 2 539.306198 1076.59784 0.36893 0.00019897 -0.011759 -6.3415E-06 0.35717 0.00019263 539.3061978755577 47.559 0.56057 51.295 51.089 51.65 3.7361 67 42 2 0 0 0 0.12096 3 9393 9393;9433;9436 29.841 19.017 1 204340 4436 5597 2801 2805 5592;5593;5594 5592 0.06260834225895451 DVVVETIQMN 10 Unmodified _DVVVETIQMN_ 0 0 0 ENSG00000128536|ENST00000317716|CDHR3;ENST00000468143.1_1_7:105668974-105673140:+|nuORF ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 MULTI-MSMS UPN48_class_I_Rep_1 5 574.2865600585938 2 574.286814 1146.55907 0.42496 0.00024405 -2.1538 -0.0012369 -1.7288 -0.00099285 574.2854270778527 52.804 0.43719 56.323 56.089 56.527 3.5192 43 32 2 0 0 0 0.54822 1 10980 10980 5.7319 0.43497 1 120730 4437 2594 2802 2806 5595 5595 -0.008342591907648966 DVVYALKRQGR 11 Unmodified _DVVYALKRQGR_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MSMS UPN48_class_I_Rep_2 6 435.5856628417969 3 435.585966 1303.73607 NaN NaN NaN NaN NaN NaN NaN 28.702 1 32.333 31.833 32.833 3.6311 0 0 0 0.3803 1 3981 3981 7.0371 3.7174 1 4438 3798 2803 2807 5596 5596 0.09634957474349903 DVVYALKRQGR 11 Unmodified _DVVYALKRQGR_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS UPN48_class_I_Rep_3 7 435.5857849121094 3 435.585966 1303.73607 0.033184 1.4454E-05 -0.32485 -0.0001415 -0.29166 -0.00012705 435.5856956161839 28.581 0.58374 32.323 32.059 32.643 3.7424 99 62 2 0 0 0 0.52833 3 3895 3868;3895;3949 7.0371 5.2948 1 91283 4439 3798 2803 2807 5597;5598;5599 5598 0.09634957474349903 DVVYALKRQGR 11 Unmodified _DVVYALKRQGR_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MATCH UPN48_class_I_Rep_1 5 3 435.585966 1303.73607 0.024228 1.0553E-05 -0.52236 -0.00022753 -0.49813 -0.00021698 435.58569899449924 28.434 0.15302 31.991 31.907 32.06 3.5571 -0.16628 -0.00023051 NaN 7.0371 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 39919 4440 3798 2803 2807 0.09634957474349903 DVWFSISEL 9 Unmodified _DVWFSISEL_ 0 0 0 L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|150|2|anti-sense L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|150|2|anti-sense L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|150|2|anti-sense MSMS UPN47_class_I_Rep_3 4 548.2705688476562 2 548.27149 1094.52843 NaN NaN NaN NaN NaN NaN NaN 49.105 1 52.34 51.84 52.84 3.2345 0 0 0 0.38639 1 10735 10735 3.9444 0 1 4441 15062 2804 2808 5600 5600 -0.015056695135399423 DVWLFVMQQ 9 Unmodified _DVWLFVMQQ_ 0 0 0 MLT1H1_dup3006|chr15:63524414-63524974:-|1.2561570340750652|0.3625765071036828|1.79|149.0|8|1|sense MLT1H1_dup3006|chr15:63524414-63524974:-|1.2561570340750652|0.3625765071036828|1.79|149.0|8|1|sense MLT1H1_dup3006|chr15:63524414-63524974:-|1.2561570340750652|0.3625765071036828|1.79|149.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 583.2910766601562 2 583.289159 1164.56377 NaN NaN NaN NaN NaN NaN NaN 52.778 1 56.388 55.888 56.888 3.6098 0 0 0 0.36505 1 10998 10998 7.2892 1.5574 1 4442 16440 2805 2809 5601 5601 -0.011933302573652327 DVYENLYAGR 10 Unmodified _DVYENLYAGR_ 0 0 0 nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 MSMS UPN48_class_I_Rep_1 5 600.2882080078125 2 600.288202 1198.56185 NaN NaN NaN NaN NaN NaN NaN 47.184 1 50.706 50.206 51.206 3.5219 0 0 0 0.53105 1 9296 9296 10.8 5.0391 1 4443 3971 2806 2810 5602 5602 -0.029486677416571183 DVYENLYAGR 10 Unmodified _DVYENLYAGR_ 0 0 0 nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 MSMS UPN48_class_I_Rep_2 6 600.2890625 2 600.288202 1198.56185 NaN NaN NaN NaN NaN NaN NaN 46.788 1 50.538 50.038 51.038 3.7494 0 0 0 0.53105 1 9183 9183 10.151 5.8213 1 4444 3971 2806 2810 5603 5603 -0.029486677416571183 DVYENLYAGR 10 Unmodified _DVYENLYAGR_ 0 0 0 nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 MSMS UPN48_class_I_Rep_2 6 600.2887573242188 2 600.288202 1198.56185 NaN NaN NaN NaN NaN NaN NaN 46.968 1 50.717 50.217 51.217 3.7494 0 0 0 0.53105 1 9239 9239 29.437 18.613 1 4445 3971 2806 2810 5604 5604 -0.029486677416571183 DVYENLYAGR 10 Unmodified _DVYENLYAGR_ 0 0 0 nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 MSMS UPN48_class_I_Rep_3 7 600.2876586914062 2 600.288202 1198.56185 NaN NaN NaN NaN NaN NaN NaN 47.1 1 50.737 50.237 51.237 3.6363 0 0 0 0.53105 1 9209 9209 21.59 10.791 1 4446 3971 2806 2810 5605 5605 -0.029486677416571183 DVYPEIIER 9 Unmodified _DVYPEIIER_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS UPN48_class_I_Rep_1 5 567.2957153320312 2 567.295496 1132.57644 0.43544 0.00024702 0.041113 2.3323E-05 0.47655 0.00027035 567.2954067585421 52.776 0.90318 56.296 55.963 56.866 3.5192 177 67 4 0 0 0 0.079935 5 11001 10922;10927;11001;11079;11081 38.615 22.466 1 606800 4447 1611 2807 2811 5606;5607;5608;5609;5610 5608 0.015454044065336348 DVYPEIIER 9 Unmodified _DVYPEIIER_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS UPN48_class_I_Rep_2 6 567.2955322265625 2 567.295496 1132.57644 0.53247 0.00030207 -0.073406 -4.1643E-05 0.45906 0.00026043 567.2953709262758 52.646 0.80357 56.285 55.971 56.775 3.639 135 53 3 0 0 0 0.086321 6 10965 10885;10888;10927;10965;11008;11021 37.075 20.926 1 635870 4448 1611 2807 2811 5611;5612;5613;5614;5615;5616 5614 0.015454044065336348 DVYPEIIER 9 Unmodified _DVYPEIIER_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS UPN48_class_I_Rep_3 7 567.2957153320312 2 567.295496 1132.57644 0.31221 0.00017711 0.087268 4.9507E-05 0.39948 0.00022662 567.2954226546311 52.711 0.81376 56.309 56.014 56.828 3.5979 132 54 3 0 0 0 0.071184 7 10906 10836;10865;10906;10951;10989;10993;11038 40.725 24.576 1 692860 4449 1611 2807 2811 5617;5618;5619;5620;5621;5622;5623 5619 0.015454044065336348 DVYSDLNTQR 10 Unmodified _DVYSDLNTQR_ 0 0 0 ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP ENST00000588439.1_1_19:36395473-36398510:-|nuORF ENST00000588439.1_1_19:36395473-36398510:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 605.788818359375 2 605.788566 1209.56258 0.44767 0.00027119 -0.36532 -0.0002213 0.082353 4.9889E-05 605.7883897257782 39.282 0.57253 42.787 42.549 43.121 3.5048 125 54 3 0 0 0 0.00042633 4 6906 6867;6906;6947;6990 105.35 105.35 1 315630 4450 778 2808 2812 5624;5625;5626;5627 5625 -0.033818730925759155 DVYSDLNTQR 10 Unmodified _DVYSDLNTQR_ 0 0 0 ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP ENST00000588439.1_1_19:36395473-36398510:-|nuORF ENST00000588439.1_1_19:36395473-36398510:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 605.7890625 2 605.788566 1209.56258 0.44344 0.00026863 -0.25581 -0.00015496 0.18764 0.00011367 605.7885338226733 38.937 0.67398 42.667 42.434 43.108 3.7297 139 63 3 0 0 0 0.00042633 3 6865 6825;6865;6903 105.35 69.218 1 331410 4451 778 2808 2812 5628;5629;5630 5629 -0.033818730925759155 DVYSDLNTQR 10 Unmodified _DVYSDLNTQR_ 0 0 0 ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP ENST00000588439.1_1_19:36395473-36398510:-|nuORF ENST00000588439.1_1_19:36395473-36398510:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 605.7887573242188 2 605.788566 1209.56258 0.46063 0.00027905 -0.089132 -5.3995E-05 0.3715 0.00022505 605.7885730140785 39.051 0.73047 42.706 42.435 43.165 3.6557 133 66 3 0 0 0 0.00042633 5 6822 6746;6783;6822;6850;6859 105.35 76.264 1 315620 4452 778 2808 2812 5631;5632;5633;5634;5635 5633 -0.033818730925759155 DVYWNRRK 8 Unmodified _DVYWNRRK_ 0 0 0 REV__ENSG00000132313|ENST00000337109|MRPL35 REV__ENSG00000132313|ENST00000337109|MRPL35 MULTI-MSMS UPN47_class_I_Rep_2 3 568.802001953125 2 568.801614 1135.58868 0.18625 0.00010594 -0.7241 -0.00041187 -0.53785 -0.00030593 568.8013024977321 44.554 0.41402 47.909 47.691 48.105 3.3555 41 31 2 0 0 0 0.82752 1 9279 9279 5.2307 1.6342 1 57625 + 4453 19006 2809 2813 5636 5636 0.026304856602337168 DWAPNFPG 8 Unmodified _DWAPNFPG_ 0 0 0 MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|70|3|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|70|3|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|70|3|anti-sense MSMS UPN47_class_I_Rep_1 2 452.2575378417969 2 452.20341 902.392267 NaN NaN NaN NaN NaN NaN NaN 33.264 1 36.962 36.462 37.462 3.6983 0 0 0 0.40625 1 5835 5835 2.3027 0.4585 1 4454 16611 2810 2814 5637 5637 -0.06283319233523343 DWEEWRPT 8 Unmodified _DWEEWRPT_ 0 0 0 ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 MSMS UPN47_class_I_Rep_1 2 559.2854614257812 2 559.748713 1117.48287 NaN NaN NaN NaN NaN NaN NaN 30.101 1 33.846 33.346 34.346 3.7449 0 0 0 0.40625 1 4875 4875 2.3027 0.4585 1 4455 1781 2811 2815 5638 5638 -0.07116894975888499 DWEIEIPE 8 Unmodified _DWEIEIPE_ 0 0 0 REV__ENSG00000171903|ENST00000402119|CYP4F11 REV__ENSG00000171903|ENST00000402119|CYP4F11 MSMS UPN47_class_I_Rep_3 4 515.7371215820312 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 28.805 1 32.138 31.638 32.638 3.3338 0 0 0 0.40625 1 4568 4568 2.3027 0.9732 1 + 4456 20427 2812 2816 5639 5639 -0.048062353015666304 DWFKFHIYF 9 Unmodified _DWFKFHIYF_ 0 0 0 REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|176|1|anti-sense REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|176|1|anti-sense MSMS UPN47_class_I_Rep_1 2 434.8817443847656 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 34.648 1 38.334 37.834 38.834 3.6859 0 0 0 0.3979 1 6262 6262 1.1933 0 1 + 4457 29978 2813 2817 5640 5640 -0.015416912516684533 DWHMHVAKD 9 Unmodified _DWHMHVAKD_ 0 0 0 L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|3|1|sense L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|3|1|sense L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 569.7561645507812 2 569.758558 1137.50256 NaN NaN NaN NaN NaN NaN NaN 69.238 1 72.605 72.105 73.105 3.3678 0 0 0 0.39518 1 16764 16764 1.8442 0 1 4458 8790 2814 2818 5641 5641 -0.060688422367775274 DWLVSPSVWSS 11 Unmodified _DWLVSPSVWSS_ 0 0 0 L1MB2_dup213|chr1:77571251-77571952:+|1.332759835504018|0.0778927345623915|4.1|151.0|44|3|anti-sense L1MB2_dup213|chr1:77571251-77571952:+|1.332759835504018|0.0778927345623915|4.1|151.0|44|3|anti-sense L1MB2_dup213|chr1:77571251-77571952:+|1.332759835504018|0.0778927345623915|4.1|151.0|44|3|anti-sense MSMS UPN48_class_I_Rep_1 5 631.8065795898438 2 631.806228 1261.5979 NaN NaN NaN NaN NaN NaN NaN 67.607 1 71.059 70.559 71.559 3.4517 0 0 0 0.38417 1 15552 15552 1.1933 0 1 4459 10222 2815 2819 5642 5642 -0.02243210564756737 DWPGGGTGGAR 11 Unmodified _DWPGGGTGGAR_ 0 0 0 ENST00000575334.5_3_16:4466638-4470487:-|nuORF;ENST00000573165.1_2_16:4466638-4475523:-|nuORF ENST00000575334.5_3_16:4466638-4470487:-|nuORF ENST00000575334.5_3_16:4466638-4470487:-|nuORF MSMS UPN48_class_I_Rep_1 5 515.7975463867188 2 515.73868 1029.46281 NaN NaN NaN NaN NaN NaN NaN 31.914 1 35.448 34.948 35.948 3.5342 0 0 0 0.38417 1 4783 4783 1.0715 0.27783 1 4460 7521 2816 2820 5643 5643 -0.05074645915851761 DWQELEWE 8 Unmodified _DWQELEWE_ 0 0 0 L1MC3_dup5864|chr7:152284236-152285464:+|2.031006925294479|0.0430285188600787|5.56|151.0|51|3|sense L1MC3_dup5864|chr7:152284236-152285464:+|2.031006925294479|0.0430285188600787|5.56|151.0|51|3|sense L1MC3_dup5864|chr7:152284236-152285464:+|2.031006925294479|0.0430285188600787|5.56|151.0|51|3|sense MSMS UPN48_class_I_Rep_2 6 567.7410278320312 2 567.740554 1133.46655 NaN NaN NaN NaN NaN NaN NaN 22.581 1 26.224 25.724 26.724 3.6432 0 0 0 0.40643 1 2331 2331 2.0598 0 1 4461 11359 2817 2821 5644 5644 -0.09484020932654857 DWRAWWQR 8 Unmodified _DWRAWWQR_ 0 0 0 ENSG00000101230|ENST00000262487|ISM1 ENSG00000101230|ENST00000262487|ISM1 ENSG00000101230|ENST00000262487|ISM1 MSMS UPN46_class_I_Rep_3 1 602.2114868164062 2 602.293956 1202.57336 NaN NaN NaN NaN NaN NaN NaN 35.483 1 35.483 34.983 35.983 0 0 0 0 0.40738 1 6466 6466 0.79363 0 1 4462 1558 2818 2822 5645 5645 -0.019823811369860778 DWRTVKSLWKT 11 Unmodified _DWRTVKSLWKT_ 0 0 0 L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|29|2|sense L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|29|2|sense L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|29|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.2822570800781 3 473.929621 1418.76703 0.25004 0.0001185 -3.0307 -0.0014363 -2.7806 -0.0013178 474.2626313870571 110.25 0.12064 110.25 110.21 110.33 0 11 9 2 0 0 0 22.551 1 27167 27167 2.2527 1.0379 1 137260 4463 10540 2819 2823 5646 5646 0.07440110788593302 DWSSPFILY 9 Unmodified _DWSSPFILY_ 0 0 0 REV__AluSp_dup41108|chr16:89483547-89483838:+|1.2533035352494646|0.0129000443702004|6.6|151.0|20|3|anti-sense REV__AluSp_dup41108|chr16:89483547-89483838:+|1.2533035352494646|0.0129000443702004|6.6|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 564.2742309570312 2 564.274032 1126.53351 NaN NaN NaN NaN NaN NaN NaN 112.41 1 115.92 115.42 116.42 3.5098 0 0 0 0.39428 1 27596 27596 2.0598 0 1 + 4464 17112 2820 2824 5647 5647 -0.024693656508816275 DWTCVTLATY 10 Unmodified _DWTCVTLATY_ 0 0 0 nc|ENSG807|P61550|ERVS71-1 nc|ENSG807|P61550|ERVS71-1 nc|ENSG807|P61550|ERVS71-1 MSMS UPN46_class_I_Rep_3 1 586.7680053710938 2 586.768257 1171.52196 NaN NaN NaN NaN NaN NaN NaN 64.857 1 64.857 64.357 65.357 0 0 0 0 0.53105 1 14628 14628 1.4819 0.28856 1 4465 16866 2821 2825 5648 5648 -0.056939307365382774 DWVGPNLL 8 Unmodified _DWVGPNLL_ 0 0 0 REV__AluJb_dup59901|chr9:37164600-37164863:-|1.5126077149562502|0.1111204770012703|3.77|151.0|10|3|sense REV__AluJb_dup59901|chr9:37164600-37164863:-|1.5126077149562502|0.1111204770012703|3.77|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 457.6086730957031 2 457.242535 912.470518 NaN NaN NaN NaN NaN NaN NaN 96.154 1 96.154 95.654 96.654 0 0 0 0 0.4044 1 23372 23372 4.756 0 1 + 4466 16955 2822 2826 5649 5649 0.010781133516957198 DWVRDRFR 8 Unmodified _DWVRDRFR_ 0 0 0 nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14 nc|ENSG00000108219|Q8NG11-2|TSPAN14 nc|ENSG00000108219|Q8NG11-2|TSPAN14 MULTI-MSMS UPN47_class_I_Rep_3 4 574.7950439453125 2 575.299239 1148.58392 0.36307 0.00020887 -0.96538 -0.00055538 -0.60231 -0.00034651 575.2985031190944 59.948 0.84309 63.113 62.764 63.607 3.1651 82 47 2 0 0 0 0.82752 1 14178 14178 2.3027 0.4585 1 155860 4467 1855 2823 2827 5650 5650 0.015576015174701752 DWWCHLLR 8 Unmodified _DWWCHLLR_ 0 0 0 REV__L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|155|3|sense REV__L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|155|3|sense MSMS UPN47_class_I_Rep_1 2 564.7738647460938 2 564.774011 1127.53347 NaN NaN NaN NaN NaN NaN NaN 20.149 1 23.761 23.261 24.261 3.6118 0 0 0 0.40604 1 1971 1971 2.5775 0 1 + 4468 29613 2824 2828 5651 5651 -0.025196441319167207 DWYKPFYL 8 Unmodified _DWYKPFYL_ 0 0 0 REV__AluSq_dup8134|chr8:54061841-54062157:-|1.1452601270383036|0.0719413324440503|3.99|151.0|23|3|anti-sense REV__AluSq_dup8134|chr8:54061841-54062157:-|1.1452601270383036|0.0719413324440503|3.99|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 566.28125 2 566.279118 1130.54368 NaN NaN NaN NaN NaN NaN NaN 24.933 1 28.5 28 29 3.5667 0 0 0 0.40738 1 2827 2827 0.79363 0 1 + 4469 17120 2825 2829 5652 5652 -0.01636757925666643 DWYWCFIEC 9 Unmodified _DWYWCFIEC_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|181|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|181|2|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|181|2|anti-sense MSMS UPN47_class_I_Rep_1 2 632.7432250976562 2 632.743728 1263.4729 NaN NaN NaN NaN NaN NaN NaN 73.139 1 76.525 76.025 77.025 3.3861 0 0 0 0.4007 1 17941 17941 0.52476 0 1 4470 14172 2826 2830 5653 5653 -0.14829542297161424 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14;ENSG00000103043|ENST00000261776|VAC14 ENST00000571759.1_1_16:70721833-70722010:-|nuORF ENST00000571759.1_1_16:70721833-70722010:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 568.776611328125 2 568.274564 1134.53457 0.44824 0.00025472 0.097923 5.5647E-05 0.54616 0.00031037 568.2744004547116 72.585 0.42163 76.059 75.913 76.335 3.4732 45 31 3 0 0 0 0.026395 1 17081 17081 59.368 37.622 1 147370 4471 1641 2827 2831 5654 5654 -0.0273115128200061 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14;ENSG00000103043|ENST00000261776|VAC14 ENST00000571759.1_1_16:70721833-70722010:-|nuORF ENST00000571759.1_1_16:70721833-70722010:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 568.7755737304688 2 568.274564 1134.53457 0.47932 0.00027239 -0.17767 -0.00010096 0.30166 0.00017142 568.2744278493238 72.547 0.54994 76.111 75.791 76.341 3.5645 66 48 2 0 0 0 0.013215 2 16977 16977;16999 67.838 39.351 1 91903 4472 1641 2827 2831 5655;5656 5655 -0.0273115128200061 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14;ENSG00000103043|ENST00000261776|VAC14 ENST00000571759.1_1_16:70721833-70722010:-|nuORF ENST00000571759.1_1_16:70721833-70722010:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 568.7772216796875 2 568.274564 1134.53457 0.50658 0.00028788 0.10265 5.8331E-05 0.60922 0.00034621 568.2746209019625 72.427 0.49128 75.954 75.764 76.255 3.5266 76 43 2 0 0 0 0.013215 3 16928 16864;16910;16928 67.838 39.351 1 90119 4473 1641 2827 2831 5657;5658;5659 5659 -0.0273115128200061 DYAHPVVL 8 Unmodified _DYAHPVVL_ 0 0 0 L1MA2_dup6754|chr16:29149270-29149638:-|1.342099235315953|0.0160771496411404|6.38|151.0|20|1|anti-sense L1MA2_dup6754|chr16:29149270-29149638:-|1.342099235315953|0.0160771496411404|6.38|151.0|20|1|anti-sense L1MA2_dup6754|chr16:29149270-29149638:-|1.342099235315953|0.0160771496411404|6.38|151.0|20|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 457.2430419921875 2 457.242535 912.470518 0.20453 9.3522E-05 0.4223 0.00019309 0.62684 0.00028662 457.24253062579857 106.53 0.26219 106.53 106.46 106.72 0 39 31 2 0 0 0 0.82752 1 25984 25984 0.79363 0 1 109410 4474 9447 2828 2832 5660 5660 0.010781133517184571 DYARLQQVD 9 Unmodified _DYARLQQVD_ 0 0 0 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MSMS UPN47_class_I_Rep_3 4 554.2734375 2 554.275095 1106.53564 NaN NaN NaN NaN NaN NaN NaN 66.309 1 69.494 68.994 69.994 3.1853 0 0 0 0.38916 1 15984 15984 3.2813 0.28607 1 4475 2756 2829 2833 5661 5661 -0.013369369130941777 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MSMS UPN48_class_I_Rep_1 5 607.2864379882812 2 607.285463 1212.55637 NaN NaN NaN NaN NaN NaN NaN 50.234 1 53.758 53.258 54.258 3.5246 0 0 0 0.19736 1 10237 10237 16.566 6.4919 1 4476 4338 2830 2834 5662 5662 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MSMS UPN48_class_I_Rep_1 5 607.2855224609375 2 607.285463 1212.55637 NaN NaN NaN NaN NaN NaN NaN 50.42 1 53.945 53.445 54.445 3.5246 0 0 0 0.28608 1 10295 10295 11.495 4.2055 1 4477 4338 2830 2834 5663 5663 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 405.1924743652344 3 405.192734 1212.55637 -0.13921 -5.6408E-05 -3.1753 -0.0012866 -3.3145 -0.001343 405.5247823438297 50.435 0.31102 53.959 53.757 54.068 3.5246 33 20 2 0 0 0 0.1238 1 10253 10253 3.8763 0.55669 1 89469 4478 4338 2830 2834 5664 5664 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 405.192734 1212.55637 0.0473 1.9166E-05 -4.158 -0.0016848 -4.1107 -0.0016656 405.5242728329729 50.188 0.53517 53.882 53.581 54.116 3.6946 -0.016094 0.00073027 NaN 3.8763 53 35 2 NaN NaN NaN NaN 0 NaN NaN 0 161070 4479 4338 2830 2834 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598 ENST00000565396.5_1_16:2050390-2052694:-|nuORF ENST00000565396.5_1_16:2050390-2052694:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 405.192734 1212.55637 -0.01105 -4.4772E-06 -5.1012 -0.002067 -5.1122 -0.0020714 405.52415719373727 50.233 0.73806 53.854 53.439 54.177 3.621 -0.044718 -0.0004163 NaN 3.8763 67 44 2 NaN NaN NaN NaN 0 NaN NaN 0 199460 4480 4338 2830 2834 -0.041403465334497014 DYDSVFHHL 9 Unmodified _DYDSVFHHL_ 0 0 0 nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF nc|ENSG00000120616|Q9H2F5-3|EPC1 nc|ENSG00000120616|Q9H2F5-3|EPC1 MSMS UPN48_class_I_Rep_3 7 566.7568969726562 2 566.756538 1131.49852 NaN NaN NaN NaN NaN NaN NaN 50.804 1 54.414 53.914 54.914 3.6105 0 0 0 0.35339 1 10346 10346 7.9102 3.1541 1 4481 2329 2831 2835 5665 5665 -0.06196608458844821 DYDTNITF 8 Unmodified _DYDTNITF_ 0 0 0 Tigger1_dup5796|chr7:102057201-102058280:+|2.333737617361072|0.0159568566124727|7.19|151.0|31|3|sense Tigger1_dup5796|chr7:102057201-102058280:+|2.333737617361072|0.0159568566124727|7.19|151.0|31|3|sense Tigger1_dup5796|chr7:102057201-102058280:+|2.333737617361072|0.0159568566124727|7.19|151.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 494.789306640625 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 29.354 1 33.082 32.582 33.582 3.7286 0 0 0 0.40659 1 4105 4105 1.8442 1.0506 1 4482 33133 2832 2836 5666 5666 -0.07567094852709033 DYEAESLARLQ 11 Unmodified _DYEAESLARLQ_ 0 0 0 nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-5|RGS7;ENSG00000182901|ENST00000440928|RGS7 nc|ENSG00000182901|P49802-2|RGS7 nc|ENSG00000182901|P49802-2|RGS7 MSMS UPN48_class_I_Rep_2 6 647.8182373046875 2 647.817324 1293.62009 NaN NaN NaN NaN NaN NaN NaN 54.478 1 58.059 57.559 58.559 3.5817 0 0 0 0.38417 1 11519 11519 1.1933 0 1 4483 16769 2833 2837 5667 5667 -0.014970308869806104 DYETKLVI 8 Unmodified _DYETKLVI_ 0 0 0 L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|26|1|sense L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|26|1|sense L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|26|1|sense MSMS UPN47_class_I_Rep_2 3 490.7688903808594 2 490.768583 979.522613 NaN NaN NaN NaN NaN NaN NaN 76.989 1 80.32 79.82 80.82 3.3315 0 0 0 0.40746 1 19077 19077 0.69038 0 1 4484 11701 2834 2838 5668 5668 0.032032319747941074 DYGEWTLPP 9 Unmodified _DYGEWTLPP_ 0 0 0 REV__ENSG00000131446|ENST00000307826|MGAT1 REV__ENSG00000131446|ENST00000307826|MGAT1 MSMS UPN48_class_I_Rep_2 6 539.2467651367188 2 539.248015 1076.48148 NaN NaN NaN NaN NaN NaN NaN 54.194 1 57.775 57.275 58.275 3.5817 0 0 0 0.39428 1 11431 11431 2.0598 0.21551 1 + 4485 18979 2835 2839 5669 5669 -0.053705290646803405 DYGSAGDGEEG 11 Unmodified _DYGSAGDGEEG_ 0 0 0 REV__ENSG00000109445|ENST00000262990|ZNF330 REV__ENSG00000109445|ENST00000262990|ZNF330 MSMS UPN47_class_I_Rep_3 4 528.6893310546875 2 528.691258 1055.36796 NaN NaN NaN NaN NaN NaN NaN 96.786 1 100.2 99.7 100.7 3.414 0 0 0 0.38417 1 23995 23995 1.3295 0.5359 1 + 4486 18405 2836 2840 5670 5670 -0.15750668968371428 DYIWYPVY 8 Unmodified _DYIWYPVY_ 0 0 0 REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|48|3|anti-sense REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_1 2 559.296630859375 2 559.7633 1117.51205 NaN NaN NaN NaN NaN NaN NaN 112.07 1 115.65 115.15 116.15 3.572 0 0 0 0.40738 1 27655 27655 0.79363 0 1 + 4487 24355 2837 2841 5671 5671 -0.04200750679615339 DYIWYPVY 8 Unmodified _DYIWYPVY_ 0 0 0 REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|48|3|anti-sense REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.7612915039062 2 559.7633 1117.51205 NaN NaN NaN NaN NaN NaN NaN 21.36 1 24.709 24.209 25.209 3.3496 0 0 0 0.40738 1 2375 2375 0.79363 0 1 + 4488 24355 2837 2841 5672 5672 -0.04200750679615339 DYIWYPVY 8 Unmodified _DYIWYPVY_ 0 0 0 REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|48|3|anti-sense REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|48|3|anti-sense MSMS UPN48_class_I_Rep_2 6 559.7638549804688 2 559.7633 1117.51205 NaN NaN NaN NaN NaN NaN NaN 22.352 1 25.998 25.498 26.498 3.6459 0 0 0 0.40738 1 2269 2269 0.79363 0 1 + 4489 24355 2837 2841 5673 5673 -0.04200750679615339 DYIYWTDGK 9 Unmodified _DYIYWTDGK_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.A4192Gfs*13|1|0.08|ENSG00000168702|chr2:140322028-140322029|-/C|frameshift_variant ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-SECPEP UPN47_class_I_Rep_3 4 580.2601318359375 2 580.766571 1159.51859 0.10043 5.8329E-05 2.9746 0.0017276 3.0751 0.0017859 581.2696272996991 42.689 0.078918 45.928 45.899 45.978 3.2394 6 4 2 0 0 0 0.12321 1 8790 8790 3.9444 0.3479 1 31188 4490 4386 2838 2842 5674 5674 -0.054788575189149924 DYKYNRFPPP 10 Unmodified _DYKYNRFPPP_ 0 0 0 REV__ENSG00000186132|ENST00000334816|C2orf76 REV__ENSG00000186132|ENST00000334816|C2orf76 MSMS UPN46_class_I_Rep_3 1 432.88494873046875 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 95.687 1 95.687 95.187 96.187 0 0 0 0 0.53105 1 23245 23245 1.7423 0.7287 1 + 4491 20878 2839 2843 5675 5675 -0.006117980909493781 DYLFKPPKI 9 Unmodified _DYLFKPPKI_ 0 0 0 nc|ENSG00000293307|Q8IWF7|UBE2DNL nc|ENSG00000293307|Q8IWF7|UBE2DNL nc|ENSG00000293307|Q8IWF7|UBE2DNL MULTI-MSMS UPN47_class_I_Rep_2 3 560.824951171875 2 560.823692 1119.63283 0.047816 2.6816E-05 -0.73834 -0.00041408 -0.69052 -0.00038726 560.8232428038832 19.123 1.0067 22.513 21.997 23.004 3.3898 189 105 2 0 0 0 0.48846 1 1821 1821 1.8442 1.8442 1 99939 4492 16861 2840 2844 5676 5676 0.07780077033839916 DYLHPPVSV 9 Unmodified _DYLHPPVSV_ 0 0 0 L1MA7_dup2869|chr6:35849846-35850087:+|1.0026833032971705|0.0267462792176898|5.23|151.0|12|1|anti-sense L1MA7_dup2869|chr6:35849846-35850087:+|1.0026833032971705|0.0267462792176898|5.23|151.0|12|1|anti-sense L1MA7_dup2869|chr6:35849846-35850087:+|1.0026833032971705|0.0267462792176898|5.23|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.7665405273438 2 513.766374 1025.5182 0.27711 0.00014237 -0.1144 -5.8777E-05 0.16271 8.3594E-05 513.7662865007271 59.146 0.93292 62.563 62.163 63.096 3.4171 119 63 2 0 0 0 0.46869 1 13796 13796 3.9444 0.94915 1 313310 4493 10012 2841 2845 5677 5677 0.0064576755189591495 DYLRWHFA 8 Unmodified _DYLRWHFA_ 0 0 0 REV__LTR3A_dup128|chr19:37335411-37335875:-|1.249905904261159|0.1197789710490112|3.38|149.0|1|1|sense REV__LTR3A_dup128|chr19:37335411-37335875:-|1.249905904261159|0.1197789710490112|3.38|149.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 554.3076782226562 2 554.272158 1106.52976 NaN NaN NaN NaN NaN NaN NaN 88.826 1 92.219 91.719 92.719 3.3931 0 0 0 0.40746 1 22279 22279 0.69038 0 1 + 4494 30897 2842 2846 5678 5678 -0.01923990634099937 DYLVLVLAG 9 Unmodified _DYLVLVLAG_ 0 0 0 REV__ENSG00000151475|ENST00000281154|SLC25A31 REV__ENSG00000151475|ENST00000281154|SLC25A31 MSMS UPN47_class_I_Rep_1 2 481.77960205078125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 22.175 1 25.85 25.35 26.35 3.6749 0 0 0 0.39326 1 2533 2533 2.3027 0 1 + 4495 19656 2843 2847 5679 5679 0.06612126217078185 DYLVLVLAG 9 Unmodified _DYLVLVLAG_ 0 0 0 REV__ENSG00000151475|ENST00000281154|SLC25A31 REV__ENSG00000151475|ENST00000281154|SLC25A31 MSMS UPN47_class_I_Rep_1 2 481.7801208496094 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 22.279 1 25.954 25.454 26.454 3.6749 0 0 0 0.39326 1 2564 2564 2.3027 0 1 + 4496 19656 2843 2847 5680 5680 0.06612126217078185 DYMYEPLHL 9 Unmodified _DYMYEPLHL_ 0 0 0 AluJr_dup80408|chr19:58248321-58248532:-|1.0220558807349365|0.2363755626062536|2.11|150.0|14|3|anti-sense AluJr_dup80408|chr19:58248321-58248532:-|1.0220558807349365|0.2363755626062536|2.11|150.0|14|3|anti-sense AluJr_dup80408|chr19:58248321-58248532:-|1.0220558807349365|0.2363755626062536|2.11|150.0|14|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 590.7714233398438 2 590.7708 1179.52705 -0.016968 -1.0024E-05 0.070289 4.1525E-05 0.053321 3.15E-05 590.7707921844044 16.162 0.85823 16.162 15.836 16.694 0 179 100 3 0 0 0 0.46434 1 988 988 4.3292 0 1 106860 4497 183 2844 2848 5681 5681 -0.05553626873916073 DYNSALLSF 9 Unmodified _DYNSALLSF_ 0 0 0 REV__ERVL-B4-int_dup1766|chr8:39057921-39061531:-|1.3249607940145944|0.0533255787115025|4.63|150.0|57|2|sense REV__ERVL-B4-int_dup1766|chr8:39057921-39061531:-|1.3249607940145944|0.0533255787115025|4.63|150.0|57|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.248291015625 2 515.248015 1028.48148 0.33449 0.00017235 0.24745 0.0001275 0.58194 0.00029984 515.2480422266541 75.617 0.12702 79.218 79.103 79.23 3.6012 26 14 2 0 0 0 0.081756 1 17836 17836 38.176 1.6694 1 93573 + 4498 23254 2845 2849 5682 5682 -0.03162529064661612 DYPEDRRNERE 11 Unmodified _DYPEDRRNERE_ 0 0 0 REV__L1MEc_dup983|chr1:148423179-148423691:-|3.2617354683928883|0.2223587573715792|3.87|151.0|4|1|sense REV__L1MEc_dup983|chr1:148423179-148423691:-|3.2617354683928883|0.2223587573715792|3.87|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.55859375 3 493.558804 1477.65458 -0.32899 -0.00016238 -0.21398 -0.00010561 -0.54297 -0.00026799 493.558621471262 19.881 1.089 23.493 23.064 24.153 3.6118 220 117 3 0 0 0 0.68478 1 2025 2025 0.094841 0 1 138400 + 4499 28503 2846 2850 5683 5683 -0.06513814746199387 DYPFPLIFA 9 Unmodified _DYPFPLIFA_ 0 0 0 REV__L1MC5a_dup2050|chr2:135710753-135711363:+|1.2552274995240595|0.061561202707825|4.35|151.0|9|2|sense REV__L1MC5a_dup2050|chr2:135710753-135711363:+|1.2552274995240595|0.061561202707825|4.35|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.781005859375 2 541.781493 1081.54843 0.38775 0.00021008 -0.75535 -0.00040923 -0.3676 -0.00019916 541.7810193030755 65.115 0.7635 68.471 68.112 68.875 3.3557 66 50 2 0 0 0 0.46434 1 15601 15601 4.3292 0.38484 1 173270 + 4500 27148 2847 2851 5684 5684 0.01092126217099576 DYPLKVKL 8 Unmodified _DYPLKVKL_ 0 0 0 REV__L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|124|3|sense REV__L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|124|3|sense MSMS UPN47_class_I_Rep_3 4 488.2964782714844 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 47 1 50.244 49.744 50.744 3.2439 0 0 0 0.40625 1 10105 10105 2.3027 0 1 + 4501 25587 2848 2852 5685 5685 0.0917611897103825 DYRELRYL 8 Unmodified _DYRELRYL_ 0 0 0 REV__nc|ENSG00000174780|O76094-2|SRP72 REV__nc|ENSG00000174780|O76094-2|SRP72 MSMS UPN48_class_I_Rep_3 7 563.8348388671875 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 47.639 1 51.273 50.773 51.773 3.6339 0 0 0 0.40625 1 9368 9368 2.3027 0.4585 1 + 4502 20533 2849 2853 5686 5686 0.018882438462242135 DYRPGLVLP 9 Unmodified _DYRPGLVLP_ 0 0 0 nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 MSMS UPN47_class_I_Rep_2 3 515.7385864257812 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 27.587 1 31.085 30.585 31.585 3.4986 0 0 0 0.39428 1 4164 4164 2.0598 0.21551 1 4503 16627 2850 2854 5687 5687 0.05234046822897653 DYRVRIII 8 Unmodified _DYRVRIII_ 0 0 0 LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.3201904296875 2 524.319109 1046.62366 -0.19622 -0.00010288 0.20656 0.0001083 0.010337 5.4197E-06 524.319130404825 13.318 0.21226 16.775 16.653 16.865 3.457 46 24 2 0 0 0 0.82752 1 279 279 0.69038 0 1 51632 4504 15561 2851 2855 5688 5688 0.10221728468195579 DYRVRIII 8 Unmodified _DYRVRIII_ 0 0 0 LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.8217163085938 2 524.319109 1046.62366 -0.33287 -0.00017453 0.72286 0.00037901 0.38999 0.00020448 524.3194047778625 13.39 0.30731 16.778 16.629 16.936 3.388 67 37 2 0 0 0 0.82752 3 295 295;325;343 2.0598 0 1 38122 4505 15561 2851 2855 5689;5690;5691 5689 0.10221728468195579 DYRVRIII 8 Unmodified _DYRVRIII_ 0 0 0 LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 524.319109 1046.62366 -0.19622 -0.00010288 0.20656 0.0001083 0.010337 5.4197E-06 524.319130404825 13.318 0.21226 16.775 16.653 16.865 3.457 -0.0083991 -0.00038514 NaN 0.69038 46 24 2 NaN NaN NaN NaN 0 NaN NaN 0 51632 4506 15561 2851 2855 0.10221728468195579 DYRVRIII 8 Unmodified _DYRVRIII_ 0 0 0 LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 524.319109 1046.62366 -0.33287 -0.00017453 0.72286 0.00037901 0.38999 0.00020448 524.3194047778625 13.39 0.30731 16.778 16.629 16.936 3.388 -0.0046656 0.00015627 NaN 0.69038 67 37 2 NaN NaN NaN NaN 0 NaN NaN 0 38122 4507 15561 2851 2855 0.10221728468195579 DYRVRIII 8 Unmodified _DYRVRIII_ 0 0 0 LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|53|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 524.319109 1046.62366 -0.53835 -0.00028227 0.68484 0.00035907 0.14649 7.6808E-05 524.3194477484316 13.423 0.24877 16.796 16.702 16.951 3.3734 0.013065 0.00011641 NaN 0.69038 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 31443 4508 15561 2851 2855 0.10221728468195579 DYSFLHFPS 9 Unmodified _DYSFLHFPS_ 0 0 0 REV__ENSG00000134775|ENST00000590592|FHOD3 REV__ENSG00000134775|ENST00000590592|FHOD3 MSMS UPN48_class_I_Rep_3 7 556.7561645507812 2 556.756007 1111.49746 NaN NaN NaN NaN NaN NaN NaN 73.018 1 76.555 76.055 77.055 3.5373 0 0 0 0.39518 1 17062 17062 1.8442 0 1 + 4509 19110 2852 2856 5692 5692 -0.053828228277552626 DYSLDPRLIL 10 Unmodified _DYSLDPRLIL_ 0 0 0 REV__ENSG00000269058|ENST00000269881|CALR3 REV__ENSG00000269058|ENST00000269881|CALR3 MSMS UPN48_class_I_Rep_1 5 603.3015747070312 2 602.832246 1203.64994 NaN NaN NaN NaN NaN NaN NaN 31.264 1 34.798 34.298 35.298 3.5342 0 0 0 0.53105 1 4603 4603 1.6526 0 1 + 4510 21415 2853 2857 5693 5693 0.056259528490272714 DYSSILQKF 9 Unmodified _DYSSILQKF_ 0 0 0 nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1 nc|ENSG00000187239|Q96RU3-4|FNBP1 nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MSMS UPN48_class_I_Rep_1 5 550.7849731445312 2 550.784764 1099.55498 0.53982 0.00029732 -0.06832 -3.7629E-05 0.4715 0.00025969 550.7846888725284 68.089 1.0312 71.541 71.165 72.196 3.4517 273 87 5 0 0 0 5.5373E-81 7 15724 15604;15606;15648;15689;15724;15759;15797 258.11 121.78 1 5245300 4511 5185 2854 2858 5694;5695;5696;5697;5698;5699;5700 5698 0.009180193778320245 DYSSILQKF 9 Unmodified _DYSSILQKF_ 0 0 0 nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1 nc|ENSG00000187239|Q96RU3-4|FNBP1 nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MSMS UPN48_class_I_Rep_2 6 550.7849731445312 2 550.784764 1099.55498 0.50101 0.00027595 0.04827 2.6587E-05 0.54928 0.00030253 550.784743091932 67.943 1.0043 71.451 71.05 72.055 3.5083 288 93 4 0 0 0 8.3583E-13 6 15614 15532;15572;15614;15659;15695;15732 208.15 108.35 1 5657600 4512 5185 2854 2858 5701;5702;5703;5704;5705;5706 5703 0.009180193778320245 DYSSILQKF 9 Unmodified _DYSSILQKF_ 0 0 0 nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1 nc|ENSG00000187239|Q96RU3-4|FNBP1 nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MSMS UPN48_class_I_Rep_3 7 550.7849731445312 2 550.784764 1099.55498 0.4644 0.00025579 0.022989 1.2662E-05 0.48739 0.00026845 550.7847329061004 67.799 1.18 71.307 70.943 72.123 3.5077 318 107 4 0 0 0 7.7747E-05 6 15459 15420;15459;15499;15543;15580;15615 179.17 101.91 1 4967100 4513 5185 2854 2858 5707;5708;5709;5710;5711;5712 5708 0.009180193778320245 DYSWYFIE 8 Unmodified _DYSWYFIE_ 0 0 0 L1MB2_dup2798|chr6:24922882-24923505:-|1.0369385696176323|0.0142808135678673|6.18|151.0|28|1|anti-sense L1MB2_dup2798|chr6:24922882-24923505:-|1.0369385696176323|0.0142808135678673|6.18|151.0|28|1|anti-sense L1MB2_dup2798|chr6:24922882-24923505:-|1.0369385696176323|0.0142808135678673|6.18|151.0|28|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.7415161132812 2 561.742565 1121.47058 0.5042 0.00028323 -1.0788 -0.00060601 -0.57461 -0.00032278 561.7420102428625 30.298 0.45529 33.933 33.74 34.196 3.6351 73 43 2 0 0 0 0.82752 1 4476 4476 0.69038 0 1 101540 4514 10227 2855 2859 5713 5713 -0.08529931438965832 DYTWEYEY 8 Unmodified _DYTWEYEY_ 0 0 0 ENSG00000135324|ENST00000257776|MRAP2 ENSG00000135324|ENST00000257776|MRAP2 ENSG00000135324|ENST00000257776|MRAP2 MSMS UPN47_class_I_Rep_3 4 584.3480834960938 2 584.727112 1167.43967 NaN NaN NaN NaN NaN NaN NaN 115.01 1 118.49 117.99 118.99 3.4802 0 0 0 0.40746 1 28264 28264 0.69038 0 1 4515 2899 2856 2860 5714 5714 -0.13735129543852054 DYVAKLVRH 9 Unmodified _DYVAKLVRH_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS UPN48_class_I_Rep_1 5 550.8138427734375 2 550.81419 1099.61383 0.48296 0.00026602 -0.084841 -4.6732E-05 0.39811 0.00021929 550.814019153057 45.807 1.1054 49.323 48.839 49.944 3.5162 142 75 3 0 0 0 0.48846 1 8769 8769 1.8442 0.19162 1 401500 + 4516 20568 2857 2861 5715 5715 0.06800540462813842 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_1 5 549.2843627929688 2 549.284931 1096.55531 0.54197 0.0002977 -0.28529 -0.00015671 0.25668 0.00014099 549.2847321794613 66.947 0.73393 70.398 70.149 70.883 3.4516 102 47 3 0 0 0 0.022868 5 15337 15297;15337;15380;15424;15495 61.602 35.334 1 372160 4517 16644 2858 2862 5716;5717;5718;5719;5720 5717 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_2 6 549.2850341796875 2 549.284931 1096.55531 0.50733 0.00027867 -0.11724 -6.44E-05 0.39009 0.00021427 549.2848231323231 66.886 0.69894 70.382 70.067 70.765 3.4964 105 43 3 0 0 0 0.022868 5 15275 15229;15275;15316;15364;15410 61.602 28.816 1 427600 4518 16644 2858 2862 5721;5722;5723;5724;5725 5722 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_3 7 549.2848510742188 2 549.284931 1096.55531 0.47462 0.0002607 -0.14205 -7.8025E-05 0.33258 0.00018268 549.2848069185551 66.782 0.74799 70.29 69.962 70.71 3.5077 113 49 3 0 0 0 0.013215 5 15210 15130;15171;15210;15247;15309 67.838 38.757 1 311750 4519 16644 2858 2862 5726;5727;5728;5729;5730 5728 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 nc|ENSG00000092841|P60660-2|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENSG00000092841|ENST00000550697|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MATCH UPN47_class_I_Rep_1 2 2 549.284931 1096.55531 0.37725 0.00020722 0.12328 6.7714E-05 0.50053 0.00027493 549.2848846675056 66.954 0.12496 70.315 70.209 70.334 3.3611 -0.031407 0.00030812 NaN 67.838 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 93984 4520 16644 2858 2862 0.010894390976773138 DYVFSNSLS 9 Unmodified _DYVFSNSLS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|207|2|anti-sense;L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|116|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|207|2|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|207|2|anti-sense MSMS UPN47_class_I_Rep_1 2 516.23583984375 2 516.237647 1030.46074 NaN NaN NaN NaN NaN NaN NaN 29.698 1 33.456 32.956 33.956 3.7578 0 0 0 0.39518 1 4755 4755 1.8442 0.36234 1 4521 9419 2859 2863 5731 5731 -0.05327119444314121 DYVQIPYEV 9 Unmodified _DYVQIPYEV_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN46_class_I_Rep_3 1 563.2769165039062 2 563.276772 1124.53899 0.43039 0.00024243 -0.046945 -2.6443E-05 0.38345 0.00021599 563.2766864694687 79.622 0.41323 79.622 79.378 79.791 0 107 39 4 0 0 0 0.081756 1 18692 18692 38.176 4.0731 1 1486500 4522 4883 2860 2864 5732 5732 -0.01829686859082358 DYVQIPYEV 9 Unmodified _DYVQIPYEV_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN46_class_I_Rep_3 1 563.2769165039062 2 563.276772 1124.53899 0.43015 0.0002423 -0.1121 -6.3145E-05 0.31805 0.00017915 563.2766794078767 79.708 0.1358 79.708 79.669 79.805 0 20 10 2 0 0 0 0.066633 1 18728 18728 41.84 5.7126 1 1389700 4523 4883 2860 2864 5733 5733 -0.01829686859082358 DYVQIPYEV 9 Unmodified _DYVQIPYEV_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN47_class_I_Rep_1 2 563.2770385742188 2 563.276772 1124.53899 0.38844 0.0002188 0.08438 4.7529E-05 0.47282 0.00026633 563.2767428234652 74.997 1.1982 78.391 77.999 79.197 3.3937 265 109 4 0 0 0 0.090251 4 18481 18442;18481;18565;18607 36.127 5.061 1 692180 4524 4883 2860 2864 5734;5735;5736;5737 5735 -0.01829686859082358 DYVQIPYEV 9 Unmodified _DYVQIPYEV_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN47_class_I_Rep_2 3 563.2771606445312 2 563.276772 1124.53899 0.45665 0.00025722 0.22507 0.00012677 0.68171 0.00038399 563.276829642386 75.179 1.1389 78.492 78.115 79.254 3.3127 295 113 4 0 0 0 0.074399 2 18613 18613;18649 39.95 10.868 1 952050 4525 4883 2860 2864 5738;5739 5738 -0.01829686859082358 DYVQIPYEV 9 Unmodified _DYVQIPYEV_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN47_class_I_Rep_3 4 563.2770385742188 2 563.276772 1124.53899 0.45776 0.00025785 0.20985 0.0001182 0.66761 0.00037605 563.2768373995103 75.256 1.1959 78.503 78.077 79.272 3.2464 322 115 4 0 0 0 0.057664 3 18630 18576;18630;18819 45.7 3.6051 1 909310 4526 4883 2860 2864 5740;5741;5742 5741 -0.01829686859082358 DYVQIPYEV 9 Unmodified _DYVQIPYEV_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MATCH UPN47_class_I_Rep_2 3 2 563.276772 1124.53899 0.46567 0.0002623 -0.10793 -6.0793E-05 0.35774 0.00020151 563.2765711500019 76.214 0.096527 79.536 79.482 79.579 3.3216 -0.086444 4.6307E-06 NaN 41.84 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 36352 4527 4883 2860 2864 -0.01829686859082358 DYWLAHKAL 9 Unmodified _DYWLAHKAL_ 0 0 0 ENSG00000167531|ENST00000301046|LALBA ENSG00000167531|ENST00000301046|LALBA ENSG00000167531|ENST00000301046|LALBA MULTI-MSMS UPN48_class_I_Rep_2 6 559.2974853515625 2 558.795466 1115.57638 0.49605 0.00027719 -0.57887 -0.00032347 -0.082814 -4.6276E-05 558.7950643257923 92.988 0.17168 96.758 96.638 96.81 3.77 31 24 2 0 0 0 0.48643 1 22116 22116 2.0598 0 1 68084 4528 4310 2861 2865 5743 5743 0.02321449197165748 DYWSYTISL 9 Unmodified _DYWSYTISL_ 0 0 0 L1MD_dup6303|chr11:117031961-117032484:-|4.92155705552128|0.050267644728513|6.61|151.0|30|2|anti-sense L1MD_dup6303|chr11:117031961-117032484:-|4.92155705552128|0.050267644728513|6.61|151.0|30|2|anti-sense L1MD_dup6303|chr11:117031961-117032484:-|4.92155705552128|0.050267644728513|6.61|151.0|30|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.2694091796875 2 574.268947 1146.52334 0.55878 0.00032089 0.97817 0.00056174 1.537 0.00088262 574.2687666224151 61.734 0.9295 65.202 64.864 65.793 3.4678 163 84 3 0 0 0 0.42249 1 13825 13825 6.7232 0.99131 1 448730 4529 11888 2862 2866 5744 5744 -0.044059733761287134 DYWSYTISL 9 Unmodified _DYWSYTISL_ 0 0 0 L1MD_dup6303|chr11:117031961-117032484:-|4.92155705552128|0.050267644728513|6.61|151.0|30|2|anti-sense L1MD_dup6303|chr11:117031961-117032484:-|4.92155705552128|0.050267644728513|6.61|151.0|30|2|anti-sense L1MD_dup6303|chr11:117031961-117032484:-|4.92155705552128|0.050267644728513|6.61|151.0|30|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.26953125 2 574.268947 1146.52334 0.53762 0.00030874 -0.19834 -0.0001139 0.33928 0.00019484 574.2687693629782 61.631 0.99258 65.105 64.698 65.69 3.4738 152 82 2 0 0 0 0.46869 1 13832 13832 3.9444 0.66309 1 518940 4530 11888 2862 2866 5745 5745 -0.044059733761287134 DYWTWRISS 9 Unmodified _DYWTWRISS_ 0 0 0 ENST00000299335.7_1_17:53042160-53045648:-|nuORF ENST00000299335.7_1_17:53042160-53045648:-|nuORF ENST00000299335.7_1_17:53042160-53045648:-|nuORF MSMS UPN48_class_I_Rep_1 5 404.7693786621094 3 405.192734 1212.55637 NaN NaN NaN NaN NaN NaN NaN 50.685 1 54.209 53.709 54.709 3.5246 0 0 0 0.39518 1 10377 10377 0.96228 0 1 4531 6066 2863 2867 5746 5746 -0.04140346533426964 EAAAALTRMR 10 Unmodified _EAAAALTRMR_ 0 0 0 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MSMS UPN47_class_I_Rep_1 2 545.2933959960938 2 545.295307 1088.57606 NaN NaN NaN NaN NaN NaN NaN 26.385 1 30.147 29.647 30.647 3.7624 0 0 0 0.53105 1 3766 3766 6.7232 0.99131 1 4532 2756 2864 2868 5747 5747 0.03531706205649243 EAAAALTRMR 10 Unmodified _EAAAALTRMR_ 0 0 0 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MSMS UPN47_class_I_Rep_1 2 545.29296875 2 545.295307 1088.57606 NaN NaN NaN NaN NaN NaN NaN 26.488 1 30.25 29.75 30.75 3.7624 0 0 0 0.53105 1 3796 3796 3.5965 0.60125 1 4533 2756 2864 2868 5748 5748 0.03531706205649243 EAAAALTRMR 10 Unmodified _EAAAALTRMR_ 0 0 0 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MSMS UPN47_class_I_Rep_2 3 545.2924194335938 2 545.295307 1088.57606 NaN NaN NaN NaN NaN NaN NaN 26.407 1 29.902 29.402 30.402 3.4945 0 0 0 0.53105 1 3816 3816 10.074 1.3285 1 4534 2756 2864 2868 5749 5749 0.03531706205649243 EAAAALTRMR 10 Unmodified _EAAAALTRMR_ 0 0 0 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MSMS UPN47_class_I_Rep_2 3 545.2942504882812 2 545.295307 1088.57606 NaN NaN NaN NaN NaN NaN NaN 26.449 1 29.943 29.443 30.443 3.4945 0 0 0 0.53105 1 3828 3828 3.2813 0.54611 1 4535 2756 2864 2868 5750 5750 0.03531706205649243 EAADQKRF 8 Unmodified _EAADQKRF_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS UPN47_class_I_Rep_3 4 482.7460632324219 2 482.745973 963.477394 -0.3758 -0.00018142 0.1957 9.4473E-05 -0.1801 -8.6943E-05 482.7461004618638 39.294 0.60548 42.532 42.219 42.824 3.238 65 42 2 0 0 0 0.82752 1 7677 7677 7.9102 0 1 84363 4536 2935 2865 2869 5751 5751 -0.005805737677064826 EAALGPEKK 9 Unmodified _EAALGPEKK_ 0 0 0 REV__nc|ENSG00000182013|Q86V59-2|PNMA8A REV__nc|ENSG00000182013|Q86V59-2|PNMA8A MSMS UPN47_class_I_Rep_2 3 471.76513671875 2 471.766374 941.518196 NaN NaN NaN NaN NaN NaN NaN 28.229 1 31.727 31.227 32.227 3.4986 0 0 0 0.28608 1 4351 4351 11.495 0 1 + 4537 20745 2866 2870 5752 5752 0.04509767551905952 EAALGPEKK 9 Unmodified _EAALGPEKK_ 0 0 0 REV__nc|ENSG00000182013|Q86V59-2|PNMA8A REV__nc|ENSG00000182013|Q86V59-2|PNMA8A MSMS UPN47_class_I_Rep_2 3 471.76611328125 2 471.766374 941.518196 NaN NaN NaN NaN NaN NaN NaN 28.438 1 31.937 31.437 32.437 3.4986 0 0 0 0.37891 1 4412 4412 5.7319 0 1 + 4538 20745 2866 2870 5753 5753 0.04509767551905952 EAALGPEKK 9 Unmodified _EAALGPEKK_ 0 0 0 REV__nc|ENSG00000182013|Q86V59-2|PNMA8A REV__nc|ENSG00000182013|Q86V59-2|PNMA8A MULTI-MSMS UPN47_class_I_Rep_3 4 471.7653503417969 2 471.766374 941.518196 -0.65886 -0.00031083 -0.38948 -0.00018374 -1.0483 -0.00049457 471.76607322082776 28.455 0.3517 31.788 31.594 31.946 3.3338 40 31 2 0 0 0 0.43982 1 4467 4467 5.7319 0 1 49379 + 4539 20745 2866 2870 5754 5754 0.04509767551905952 EAAVAFLFR 9 Unmodified _EAAVAFLFR_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MSMS UPN47_class_I_Rep_2 3 512.2848510742188 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 64.207 1 67.462 66.962 67.962 3.2556 0 0 0 0.39518 1 15280 15280 1.8442 0 1 4540 1630 2867 2871 5755 5755 0.044540641684761795 EAAVPTEGVWR 11 Unmodified _EAAVPTEGVWR_ 0 0 0 ENST00000503528.1_1_4:36335268-36335424:+|nuORF ENST00000503528.1_1_4:36335268-36335424:+|nuORF ENST00000503528.1_1_4:36335268-36335424:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 405.54376220703125 3 405.543655 1213.60914 -1.0018 -0.00040629 0.4948 0.00020066 -0.50703 -0.00020562 405.5437721085397 37.071 0.48913 40.469 40.215 40.704 3.3988 57 38 2 0 0 0 0.56006 2 6980 6980;7014 6.2344 0 1 111240 4541 7139 2868 2872 5756;5757 5756 0.01087611529374044 EADIPIILH 9 Unmodified _EADIPIILH_ 0 0 0 REV__L1PA7_dup5557|chr6:118833885-118838156:-|3.572678605156628|0.0589852586195627|5.92|151.0|112|3|sense REV__L1PA7_dup5557|chr6:118833885-118838156:-|3.572678605156628|0.0589852586195627|5.92|151.0|112|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7891540527344 2 510.78985 1019.56515 -0.26761 -0.00013669 0.34701 0.00017725 0.079408 4.0561E-05 510.7899644794554 37.708 0.55875 41.096 40.927 41.485 3.3879 59 43 2 0 0 0 0.46434 1 7188 7188 4.3292 0 1 56091 + 4542 30132 2869 2873 5758 5758 0.05614627103068415 EADKSKAFPF 10 Unmodified _EADKSKAFPF_ 0 0 0 REV__ENSG00000163646|ENST00000327047|CLRN1 REV__ENSG00000163646|ENST00000327047|CLRN1 MULTI-MSMS UPN47_class_I_Rep_3 4 570.29052734375 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.3776 1 18210 18210 21.537 21.537 1 5554300 + 4543 19995 2870 2874 5759 5759 0.0021342175209611014 EADSIPRP 8 Unmodified _EADSIPRP_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MSMS UPN46_class_I_Rep_3 1 442.72955322265625 2 442.727249 883.439946 NaN NaN NaN NaN NaN NaN NaN 104.39 1 104.39 103.89 104.89 0 0 0 0 0.40404 1 25489 25489 5.2307 0 1 4544 4301 2871 2875 5760 5760 -0.006436650333171201 EADYYHTE 8 Unmodified _EADYYHTE_ 0 0 0 ENSG00000122884.12,P4HA1,chr10,-,I8.1,73045052,73046924|39|5.92|3|intron;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1 ENSG00000122884.12,P4HA1,chr10,-,I8.1,73045052,73046924|39|5.92|3|intron ENSG00000122884.12,P4HA1,chr10,-,I8.1,73045052,73046924|39|5.92|3|intron MSMS UPN47_class_I_Rep_3 4 513.7683715820312 2 514.203804 1026.39306 NaN NaN NaN NaN NaN NaN NaN 43.929 1 47.171 46.671 47.671 3.2419 0 0 0 0.40625 1 9163 9163 2.3027 1.5091 1 4545 2400 2872 2876 5761 5761 -0.11908569375123079 EAEHSWKA 8 Unmodified _EAEHSWKA_ 0 0 0 REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF MSMS UPN47_class_I_Rep_1 2 479.2247009277344 2 479.224874 956.435195 NaN NaN NaN NaN NaN NaN NaN 18.645 1 22.226 21.726 22.726 3.5806 0 0 0 0.39996 1 1595 1595 7.9102 0 1 + 4546 20069 2873 2877 5762 5762 -0.04476549176104072 EAEIDIRLR 9 Unmodified _EAEIDIRLR_ 0 0 0 ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2 ENST00000546751.1_1_12:62974148-62979324:+|nuORF ENST00000546751.1_1_12:62974148-62979324:+|nuORF MSMS UPN48_class_I_Rep_2 6 557.8147583007812 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 99.089 1 102.86 102.36 103.36 3.7707 0 0 0 0.39518 1 23536 23536 1.8442 0 1 4547 972 2874 2878 5763 5763 0.061959153919815435 EAERLIDVA 9 Unmodified _EAERLIDVA_ 0 0 0 REV__ENSG00000070601|ENST00000377765|FRMPD1 REV__ENSG00000070601|ENST00000377765|FRMPD1 MSMS UPN48_class_I_Rep_1 5 508.2593688964844 2 508.274564 1014.53457 NaN NaN NaN NaN NaN NaN NaN 64.423 1 67.877 67.377 68.377 3.4541 0 0 0 0.36505 1 14582 14582 7.2892 0 1 + 4548 17800 2875 2879 5764 5764 0.027888487179893673 EAERRFYEHEA 11 Unmodified _EAERRFYEHEA_ 0 0 0 ENSG00000104529|ENST00000618139|EEF1D ENSG00000104529|ENST00000618139|EEF1D ENSG00000104529|ENST00000618139|EEF1D MSMS UPN47_class_I_Rep_1 2 479.5545349121094 3 479.556623 1435.64804 NaN NaN NaN NaN NaN NaN NaN 37.169 1 40.838 40.338 41.338 3.6692 0 0 0 0.38417 1 7023 7023 2.4348 1.1051 1 4549 1693 2876 2880 5765 5765 -0.052357079068997336 EAFERFSL 8 Unmodified _EAFERFSL_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS UPN47_class_I_Rep_2 3 499.7501525878906 2 499.750724 997.486896 0.29814 0.000149 -1.7808 -0.00088994 -1.4826 -0.00074094 499.75077810991974 56.643 0.56363 59.944 59.511 60.075 3.3009 56 34 2 0 0 0 0.82752 1 12909 12909 6.2058 2.2614 1 114070 4550 2280 2877 2881 5766 5766 -0.011948054821914411 EAFERFSL 8 Unmodified _EAFERFSL_ 0 0 0 nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL nc|ENSG00000119397|Q7Z7A1-5|CNTRL MULTI-MSMS UPN47_class_I_Rep_3 4 499.7505187988281 2 499.750724 997.486896 0.17658 8.8247E-05 -1.0602 -0.00052985 -0.88365 -0.0004416 499.7509134628632 56.718 0.55026 59.89 59.498 60.048 3.1721 44 32 2 0 0 0 0.82752 2 13012 13012;13057 17.113 3.2068 1 98902 4551 2280 2877 2881 5767;5768 5767 -0.011948054821914411 EAFFFPFFF 9 Unmodified _EAFFFPFFF_ 0 0 0 ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF MSMS UPN47_class_I_Rep_3 4 599.78173828125 2 599.784036 1197.55352 NaN NaN NaN NaN NaN NaN NaN 42.449 1 45.688 45.188 46.188 3.2394 0 0 0 0.39326 1 8710 8710 2.3027 0 1 4552 6124 2878 2882 5769 5769 -0.037355699202862525 EAFQRLFL 8 Unmodified _EAFQRLFL_ 0 0 0 REV__L1PA4_dup6151|chr8:99738838-99744983:+|2.459492263223571|0.1152840716297733|4.42|151.0|308|3|anti-sense REV__L1PA4_dup6151|chr8:99738838-99744983:+|2.459492263223571|0.1152840716297733|4.42|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_3 4 512.2855224609375 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 64.288 1 67.462 66.962 67.962 3.1741 0 0 0 0.40746 1 15365 15365 0.69038 0 1 + 4553 29660 2879 2883 5770 5770 0.04454064168453442 EAFSQFGPIER 11 Unmodified _EAFSQFGPIER_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS UPN48_class_I_Rep_1 5 641.3193359375 2 640.817127 1279.6197 0.45945 0.00029442 0.031132 1.995E-05 0.49058 0.00031437 640.8171170057531 52.855 0.52692 56.374 56.118 56.645 3.5192 58 38 2 0 0 0 0.27667 4 11066 11002;11026;11045;11066 29.281 18.482 1 121960 4554 2188 2880 2884 5771;5772;5773;5774 5774 -0.008924058161937864 EAFSQFGPIER 11 Unmodified _EAFSQFGPIER_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS UPN48_class_I_Rep_2 6 641.3179321289062 2 640.817127 1279.6197 0.54595 0.00034985 -0.072406 -4.6399E-05 0.47354 0.00030345 640.8169990631299 52.706 0.44834 56.316 56.121 56.569 3.6098 46 28 2 0 0 0 0.27667 4 10963 10955;10963;10985;11026 23.964 14.42 1 112770 4555 2188 2880 2884 5775;5776;5777;5778 5776 -0.008924058161937864 EAFSQFGPIER 11 Unmodified _EAFSQFGPIER_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS UPN48_class_I_Rep_3 7 640.8177490234375 2 640.817127 1279.6197 0.49681 0.00031837 0.16496 0.00010571 0.66177 0.00042407 640.8172771020639 52.833 0.41654 56.431 56.261 56.678 3.5979 37 23 2 0 0 0 0.30697 2 10945 10899;10945 23.964 19.067 1 177560 4556 2188 2880 2884 5779;5780 5780 -0.008924058161937864 EAFSQFGPIER 11 Unmodified _EAFSQFGPIER_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MATCH UPN48_class_I_Rep_2 6 2 640.817127 1279.6197 0.55436 0.00035524 1.1028 0.0007067 1.6572 0.0010619 640.818821820995 53.028 0.08075 56.638 56.589 56.669 3.6098 0.15732 0.0012933 NaN 23.964 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48588 4557 2188 2880 2884 -0.008924058161937864 EAFSVFGQVER 11 Unmodified _EAFSVFGQVER_ 0 0 0 ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO ENST00000471419.6_1_X:70511819-70517312:+|nuORF ENST00000471419.6_1_X:70511819-70517312:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 634.817626953125 2 634.817127 1267.6197 0.53432 0.00033919 0.14356 9.1136E-05 0.67788 0.00043033 634.8171502994824 57.331 0.55018 60.825 60.579 61.129 3.4942 85 47 2 0 0 0 0.2652 5 12443 12351;12360;12400;12443;12499 32.616 18.71 1 241780 4558 3462 2881 2885 5781;5782;5783;5784;5785 5784 -0.0034040581620047305 EAFSVFGQVER 11 Unmodified _EAFSVFGQVER_ 0 0 0 ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO ENST00000471419.6_1_X:70511819-70517312:+|nuORF ENST00000471419.6_1_X:70511819-70517312:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 635.3213500976562 2 634.817127 1267.6197 0.60156 0.00038188 -0.19436 -0.00012338 0.4072 0.00025849 634.8172344162339 57.279 0.59943 60.793 60.586 61.186 3.5142 84 47 3 0 0 0 0.26868 5 12342 12342;12345;12382;12421;12473 32.616 18.71 1 204030 4559 3462 2881 2885 5786;5787;5788;5789;5790 5786 -0.0034040581620047305 EAFSVFGQVER 11 Unmodified _EAFSVFGQVER_ 0 0 0 ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO ENST00000471419.6_1_X:70511819-70517312:+|nuORF ENST00000471419.6_1_X:70511819-70517312:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 635.320068359375 2 634.817127 1267.6197 0.53981 0.00034268 0.13582 8.6219E-05 0.67562 0.0004289 634.817155954121 57.14 0.56966 60.683 60.468 61.037 3.5427 99 55 2 0 0 0 0.15798 4 12274 12258;12274;12301;12343 48.561 33.312 1 184710 4560 3462 2881 2885 5791;5792;5793;5794 5792 -0.0034040581620047305 EAFVLQFGYQ 10 Unmodified _EAFVLQFGYQ_ 0 0 0 L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|8|1|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|8|1|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 601.2986450195312 2 601.298039 1200.58152 NaN NaN NaN NaN NaN NaN NaN 45.805 1 49.049 48.549 49.549 3.2441 0 0 0 0.53105 1 9740 9740 1.4819 0.28856 1 4561 8537 2882 2886 5795 5795 -0.010742917308562028 EAFVRAFL 8 Unmodified _EAFVRAFL_ 0 0 0 ENST00000588551.5_1_19:30097225-30101540:+|nuORF;ENST00000586136.5_1_19:30097284-30104129:+|nuORF;ENSG00000105171|ENST00000585603|POP4 ENST00000588551.5_1_19:30097225-30101540:+|nuORF ENST00000588551.5_1_19:30097225-30101540:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 476.76605224609375 2 476.766178 951.517802 0.12646 6.0292E-05 -0.18773 -8.9503E-05 -0.061268 -2.9211E-05 476.7660570479421 62.174 0.68329 65.542 65.359 66.043 3.3681 75 43 2 0 0 0 0.82752 4 14636 14592;14636;14681;14705 16.942 3.3626 1 119710 4562 1718 2883 2887 5796;5797;5798;5799 5797 0.04010392622706149 EAFVRAFL 8 Unmodified _EAFVRAFL_ 0 0 0 ENST00000588551.5_1_19:30097225-30101540:+|nuORF;ENST00000586136.5_1_19:30097284-30104129:+|nuORF;ENSG00000105171|ENST00000585603|POP4 ENST00000588551.5_1_19:30097225-30101540:+|nuORF ENST00000588551.5_1_19:30097225-30101540:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 476.76531982421875 2 476.766178 951.517802 0.12957 6.1777E-05 -0.66348 -0.00031633 -0.53391 -0.00025455 476.7657701164276 62.582 0.69913 65.838 65.503 66.203 3.2558 67 45 2 0 0 0 0.82752 1 14768 14768 5.2307 2.6532 1 114610 4563 1718 2883 2887 5800 5800 0.04010392622706149 EAFVRAFL 8 Unmodified _EAFVRAFL_ 0 0 0 ENST00000588551.5_1_19:30097225-30101540:+|nuORF;ENST00000586136.5_1_19:30097284-30104129:+|nuORF;ENSG00000105171|ENST00000585603|POP4 ENST00000588551.5_1_19:30097225-30101540:+|nuORF ENST00000588551.5_1_19:30097225-30101540:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.76605224609375 2 476.766178 951.517802 0.0122 5.8167E-06 -0.50248 -0.00023957 -0.49028 -0.00023375 476.7657826484167 62.666 0.75949 65.836 65.453 66.213 3.1698 66 43 2 0 0 0 0.82752 2 14837 14837;14896 16.942 2.6532 1 105850 4564 1718 2883 2887 5801;5802 5801 0.04010392622706149 EAGAALALAGL 11 Unmodified _EAGAALALAGL_ 0 0 0 REV__ENSG00000135253|ENST00000610776|KCP REV__ENSG00000135253|ENST00000610776|KCP MSMS UPN47_class_I_Rep_2 3 478.77392578125 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.419 1 70.683 70.183 71.183 3.2636 0 0 0 0.20858 1 16259 16259 17.113 1.8644 1 + 4565 19128 2884 2888 5803 5803 0.054300540689382615 EAGAALALAGL 11 Unmodified _EAGAALALAGL_ 0 0 0 REV__ENSG00000135253|ENST00000610776|KCP REV__ENSG00000135253|ENST00000610776|KCP MSMS UPN47_class_I_Rep_3 4 478.7743225097656 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.303 1 70.495 69.995 70.995 3.1914 0 0 0 0.28775 1 16287 16287 13.042 0.80181 1 + 4566 19128 2884 2888 5804 5804 0.054300540689382615 EAGAALALAGL 11 Unmodified _EAGAALALAGL_ 0 0 0 REV__ENSG00000135253|ENST00000610776|KCP REV__ENSG00000135253|ENST00000610776|KCP MSMS UPN47_class_I_Rep_3 4 478.77410888671875 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.488 1 70.679 70.179 71.179 3.1914 0 0 0 0.20858 1 16343 16343 17.113 1.8644 1 + 4567 19128 2884 2888 5805 5805 0.054300540689382615 EAGENQKQP 9 Unmodified _EAGENQKQP_ 0 0 0 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 MSMS UPN48_class_I_Rep_3 7 500.7383728027344 2 500.738345 999.462138 NaN NaN NaN NaN NaN NaN NaN 20.284 1 23.905 23.405 24.405 3.6215 0 0 0 0.37692 1 1696 1696 6.2058 0 1 4568 3909 2885 2889 5806 5806 -0.037614853555623995 EAGGCSELRSC 11 Unmodified _EAGGCSELRSC_ 0 0 0 AluSx_dup50180|chr8:55996849-55997175:+|1.2068054426586712|0.1549159981560785|2.96|151.0|15|3|sense AluSx_dup50180|chr8:55996849-55997175:+|1.2068054426586712|0.1549159981560785|2.96|151.0|15|3|sense AluSx_dup50180|chr8:55996849-55997175:+|1.2068054426586712|0.1549159981560785|2.96|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2289428710938 2 556.228973 1110.44339 0.4162 0.0002315 0.68713 0.0003822 1.1033 0.00061371 556.2292942887451 76.664 0.71147 80.079 79.778 80.489 3.4149 115 66 2 0 0 0 0.67519 1 19015 19015 0.96228 0 1 318610 4569 291 2886 2890 5807 5807 -0.1074110631327585 EAGMLCYCEM 10 Unmodified _EAGMLCYCEM_ 0 0 0 REV__L1MB2_dup3609|chr7:101863658-101864161:-|1.821524405244849|0.0064059909371592|8.15|151.0|18|3|sense REV__L1MB2_dup3609|chr7:101863658-101864161:-|1.821524405244849|0.0064059909371592|8.15|151.0|18|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 575.7853393554688 2 575.207806 1148.40106 0.51832 0.00029814 -3.3816 -0.0019451 -2.8632 -0.001647 575.2060986894603 56.307 0.20244 59.608 59.477 59.68 3.3009 16 13 2 0 0 0 0.84575 1 12885 12885 3.5965 1.5367 1 76751 + 4570 25720 2887 2891 5808 5808 -0.16720541037557268 EAGPPLALYL 10 Unmodified _EAGPPLALYL_ 0 0 0 REV__ENSG00000015285|ENST00000376701|WAS REV__ENSG00000015285|ENST00000376701|WAS MULTI-MSMS UPN48_class_I_Rep_2 6 522.292236328125 2 522.292225 1042.5699 0.47021 0.00024559 -0.2859 -0.00014933 0.1843 9.6261E-05 522.291961652828 58.453 0.81667 61.952 61.622 62.439 3.4987 83 48 3 0 0 0 0.40227 1 12758 12758 19.257 2.1441 1 286650 + 4571 17594 2888 2892 5809 5809 0.05031511245783804 EAGPPLALYL 10 Unmodified _EAGPPLALYL_ 0 0 0 REV__ENSG00000015285|ENST00000376701|WAS REV__ENSG00000015285|ENST00000376701|WAS MULTI-MATCH UPN48_class_I_Rep_1 5 2 522.292225 1042.5699 0.40451 0.00021127 -0.3987 -0.00020824 0.0058068 3.0328E-06 522.2919304423665 58.416 0.64633 61.903 61.619 62.265 3.487 0.035321 -0.00010719 NaN 19.257 68 37 2 NaN NaN NaN NaN 0 NaN NaN 0 199130 + 4572 17594 2888 2892 0.05031511245783804 EAGPPLALYL 10 Unmodified _EAGPPLALYL_ 0 0 0 REV__ENSG00000015285|ENST00000376701|WAS REV__ENSG00000015285|ENST00000376701|WAS MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 522.292225 1042.5699 0.47021 0.00024559 -0.2859 -0.00014933 0.1843 9.6261E-05 522.291961652828 58.453 0.81667 61.952 61.622 62.439 3.4987 0.084588 1.0643E-05 NaN 19.257 83 48 3 NaN NaN NaN NaN 0 NaN NaN 0 286650 + 4573 17594 2888 2892 0.05031511245783804 EAGPPLALYL 10 Unmodified _EAGPPLALYL_ 0 0 0 REV__ENSG00000015285|ENST00000376701|WAS REV__ENSG00000015285|ENST00000376701|WAS MULTI-MATCH UPN48_class_I_Rep_3 7 2 522.292225 1042.5699 0.35294 0.00018434 -0.1973 -0.00010305 0.15563 8.1287E-05 522.2919696723161 58.216 0.81854 61.747 61.466 62.285 3.5317 -0.11991 0.0001032 NaN 19.257 72 53 2 NaN NaN NaN NaN 0 NaN NaN 0 233160 + 4574 17594 2888 2892 0.05031511245783804 EAHLEAEVK 9 Unmodified _EAHLEAEVK_ 0 0 0 REV__nc|ENSG00000144395|Q8NCX0-4|CCDC150 REV__nc|ENSG00000144395|Q8NCX0-4|CCDC150 MULTI-MSMS UPN47_class_I_Rep_1 2 513.2666625976562 2 513.266739 1024.51892 -0.07772 -3.9891E-05 -0.012152 -6.2372E-06 -0.089872 -4.6128E-05 513.2667317454365 43.349 0.48262 47.036 46.881 47.364 3.6875 34 25 2 0 0 0 0.47197 1 8997 8997 3.5965 0 1 51807 + 4575 19483 2889 2893 5810 5810 0.007645622009476938 EAHQRVKYT 9 Unmodified _EAHQRVKYT_ 0 0 0 ENSG00000130726|ENST00000253024|TRIM28;TRIM28|p.P510Qfs*166|1|0.3|ENSG00000130726|chr19:58549105-58549105|C/-|frameshift_variant ENSG00000130726|ENST00000253024|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 MSMS UPN46_class_I_Rep_3 1 565.8160400390625 2 566.298904 1130.58326 NaN NaN NaN NaN NaN NaN NaN 75.256 1 75.256 74.756 75.756 0 0 0 0 0.39598 1 17487 17487 1.6526 0 1 4576 2673 2890 2894 5811 5811 0.023187620777662232 EAIAGVLQR 9 Unmodified _EAIAGVLQR_ 0 0 0 ENST00000483926.5_1_1:27668800-27676624:+|nuORF;nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1 ENST00000483926.5_1_1:27668800-27676624:+|nuORF ENST00000483926.5_1_1:27668800-27676624:+|nuORF MSMS UPN48_class_I_Rep_1 5 478.7789611816406 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 40.218 1 43.723 43.223 44.223 3.5048 0 0 0 0.38639 1 7193 7193 3.9444 1.6417 1 4577 3263 2891 2895 5812 5812 0.06552876163073051 EAIAGVLQR 9 Unmodified _EAIAGVLQR_ 0 0 0 ENST00000483926.5_1_1:27668800-27676624:+|nuORF;nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1 ENST00000483926.5_1_1:27668800-27676624:+|nuORF ENST00000483926.5_1_1:27668800-27676624:+|nuORF MSMS UPN48_class_I_Rep_3 7 478.7795104980469 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 40.101 1 43.752 43.252 44.252 3.6509 0 0 0 0.37476 1 7091 7091 6.7232 0 1 4578 3263 2891 2895 5813 5813 0.06552876163073051 EAICMYAYM 9 Unmodified _EAICMYAYM_ 0 0 0 L1ME4b_dup16385|chr14:45209015-45209330:-|2.80418267987058|0.335307040810081|3.06|151.0|7|2|sense L1ME4b_dup16385|chr14:45209015-45209330:-|2.80418267987058|0.335307040810081|3.06|151.0|7|2|sense L1ME4b_dup16385|chr14:45209015-45209330:-|2.80418267987058|0.335307040810081|3.06|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 547.72119140625 2 547.721407 1093.42826 NaN NaN NaN NaN NaN NaN NaN 116.9 1 120.39 119.89 120.89 3.4891 0 0 0 0.39428 1 28553 28553 2.0598 0.21551 1 4579 12895 2892 2896 5814 5814 -0.11471689434847576 EAIEKQTYRM 10 Unmodified _EAIEKQTYRM_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MSMS UPN47_class_I_Rep_1 2 634.818603515625 2 634.818812 1267.62307 NaN NaN NaN NaN NaN NaN NaN 28.968 1 32.726 32.226 33.226 3.7578 0 0 0 0.53105 1 4535 4535 1.1933 0.23107 1 + 4580 20619 2893 2897 5815 5815 -3.479033830444678E-05 EAIIENFLSD 10 Unmodified _EAIIENFLSD_ 0 0 0 REV__L1M2b_dup46|chr3:138648762-138649100:-|1.3120024375461756|0.0039012304551626|8.39|151.0|6|2|sense REV__L1M2b_dup46|chr3:138648762-138649100:-|1.3120024375461756|0.0039012304551626|8.39|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 575.7852172851562 2 575.784961 1149.55537 0.51834 0.00029845 0.32245 0.00018566 0.84079 0.00048411 575.7848494783814 56.114 0.95216 59.415 59.063 60.015 3.3009 114 56 3 0 0 0 0.34027 1 12800 12800 24.991 0 1 288210 + 4581 24275 2894 2898 5816 5816 -0.013426056929802144 EAIIENFLSD 10 Unmodified _EAIIENFLSD_ 0 0 0 REV__L1M2b_dup46|chr3:138648762-138649100:-|1.3120024375461756|0.0039012304551626|8.39|151.0|6|2|sense REV__L1M2b_dup46|chr3:138648762-138649100:-|1.3120024375461756|0.0039012304551626|8.39|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 575.78515625 2 575.784961 1149.55537 0.40108 0.00023093 0.18969 0.00010922 0.59076 0.00034015 575.7848740000516 56.235 0.91867 59.407 59.098 60.017 3.1721 120 58 3 0 0 0 0.34027 1 12943 12943 24.991 0 1 411010 + 4582 24275 2894 2898 5817 5817 -0.013426056929802144 EAIINNLKI 9 Unmodified _EAIINNLKI_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.3113403320312 2 514.310949 1026.60735 0.26579 0.0001367 0.0035743 1.8383E-06 0.26937 0.00013854 514.3109079692863 58.232 0.79309 61.669 61.342 62.135 3.437 81 50 2 0 0 0 0.11355 2 13403 13355;13403 31.268 0 1 216710 4583 8455 2895 2899 5818;5819 5819 0.09510602511409161 EAIINNLKI 9 Unmodified _EAIINNLKI_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.3109130859375 2 514.310949 1026.60735 0.17689 9.0977E-05 0.22621 0.00011634 0.4031 0.00020732 514.3110038566966 58.449 0.8362 61.731 61.426 62.262 3.2818 84 48 2 0 0 0 0.10568 2 13493 13493;13622 32.786 0 1 178950 4584 8455 2895 2899 5820;5821 5820 0.09510602511409161 EAIINNLKI 9 Unmodified _EAIINNLKI_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.3113403320312 2 514.310949 1026.60735 0.17384 8.9407E-05 -0.020896 -1.0747E-05 0.15294 7.866E-05 514.3109332754361 58.593 0.84986 61.759 61.419 62.269 3.1658 100 51 3 0 0 0 0.11355 3 13613 13572;13613;13700 31.268 0 1 205300 4585 8455 2895 2899 5822;5823;5824 5823 0.09510602511409161 EAIINNLKI 9 Unmodified _EAIINNLKI_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|73|2|sense MSMS UPN48_class_I_Rep_3 7 514.3106689453125 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 58.294 1 61.826 61.326 62.326 3.5317 0 0 0 0.098423 1 12619 12619 24.991 0 1 4586 8455 2895 2899 5825 5825 0.09510602511409161 EAIRVHLSNP 10 Unmodified _EAIRVHLSNP_ 0 0 0 REV__ENST00000513207.2_1_11:78140762-78140879:-|nuORF REV__ENST00000513207.2_1_11:78140762-78140879:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 567.7876586914062 2 568.314554 1134.61456 0.34258 0.0001947 -0.60869 -0.00034593 -0.26611 -0.00015123 568.3141756721324 55.93 0.41889 59.408 59.159 59.578 3.4785 31 25 2 0 0 0 0.84575 1 12740 12740 5.7319 1.4026 1 64684 + 4587 22751 2896 2900 5826 5826 0.052633351118629434 EAISEVLQDLR 11 Unmodified _EAISEVLQDLR_ 0 0 0 ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF MSMS UPN48_class_I_Rep_2 6 636.8433837890625 2 636.843342 1271.67213 NaN NaN NaN NaN NaN NaN NaN 67.08 1 70.576 70.076 71.076 3.4964 0 0 0 0.3663 1 15375 15375 7.9454 3.0484 1 4588 710 2897 2901 5827 5827 0.047161325267552456 EAISEVLQDLR 11 Unmodified _EAISEVLQDLR_ 0 0 0 ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF MSMS UPN48_class_I_Rep_3 7 636.8429565429688 2 636.843342 1271.67213 NaN NaN NaN NaN NaN NaN NaN 66.935 1 70.443 69.943 70.943 3.5077 0 0 0 0.26963 1 15242 15242 14.218 6.6092 1 4589 710 2897 2901 5828 5828 0.047161325267552456 EAKEIKLY 8 Unmodified _EAKEIKLY_ 0 0 0 ENSG00000119661|ENST00000553645|DNAL1 ENSG00000119661|ENST00000553645|DNAL1 ENSG00000119661|ENST00000553645|DNAL1 MULTI-MSMS UPN47_class_I_Rep_3 4 497.28436279296875 2 497.2844 992.554247 -0.4165 -0.00020712 0.54523 0.00027113 0.12873 6.4015E-05 497.2846650882357 29.309 0.84001 32.632 32.242 33.082 3.3235 133 71 2 0 0 0 0.82752 1 4702 4702 11.64 3.047 1 142510 4590 2287 2898 2902 5829 5829 0.057672247287428036 EAKGWETH 8 Unmodified _EAKGWETH_ 0 0 0 REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|127|3|sense REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|127|3|sense MSMS UPN47_class_I_Rep_2 3 479.22454833984375 2 479.224874 956.435195 NaN NaN NaN NaN NaN NaN NaN 18.842 1 22.232 21.732 22.732 3.3898 0 0 0 0.40472 1 1663 1663 4.3292 0 1 + 4591 24949 2899 2903 5830 5830 -0.04476549176104072 EAKGWETH 8 Unmodified _EAKGWETH_ 0 0 0 REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|127|3|sense REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|127|3|sense MSMS UPN47_class_I_Rep_2 3 479.2247619628906 2 479.224874 956.435195 NaN NaN NaN NaN NaN NaN NaN 18.988 1 22.377 21.877 22.877 3.3898 0 0 0 0.40472 1 1702 1702 4.3292 0 1 + 4592 24949 2899 2903 5831 5831 -0.04476549176104072 EAKGWETH 8 Unmodified _EAKGWETH_ 0 0 0 REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|127|3|sense REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|127|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.224853515625 2 479.224874 956.435195 -0.71644 -0.00034334 0.24711 0.00011842 -0.46933 -0.00022491 479.22488614281286 19.296 0.37238 22.647 22.488 22.861 3.3514 55 40 2 0 0 0 0.82752 1 1758 1758 12.532 0 1 39453 + 4593 24949 2899 2903 5832 5832 -0.04476549176104072 EAKKHQKKR 9 Unmodified _EAKKHQKKR_ 0 0 0 REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|13|1|sense REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 576.85205078125 2 576.851638 1151.68872 NaN NaN NaN NaN NaN NaN NaN 107.78 1 111.45 110.95 111.95 3.6724 0 0 0 0.38478 1 26419 26419 4.3292 0 1 + 4594 28896 2900 2904 5833 5833 0.1189472299404315 EAKKLEKI 8 Unmodified _EAKKLEKI_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MSMS UPN47_class_I_Rep_3 4 479.7999572753906 2 479.800217 957.585882 -0.77093 -0.00036989 0.20881 0.00010019 -0.56211 -0.0002697 479.8001343431486 15.285 0.44078 18.651 18.462 18.903 3.3659 87 48 2 0 0 0 0.82752 1 738 738 8.5933 0 1 122970 4595 16663 2901 2905 5834 5834 0.1053921748269886 EAKLKELY 8 Unmodified _EAKLKELY_ 0 0 0 REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|7|2|sense REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.2839660644531 2 497.2844 992.554247 -0.28576 -0.00014211 0.32468 0.00016146 0.03892 1.9354E-05 497.28452417293914 28.771 0.755 32.537 32.31 33.065 3.7662 104 66 2 0 0 0 0.82752 1 4489 4489 10.824 0 1 138620 + 4596 25714 2902 2906 5835 5835 0.057672247287428036 EAKNFQPQ 8 Unmodified _EAKNFQPQ_ 0 0 0 nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17;nc|ENSG00000132972|Q9BXT8-2|RNF17;nc|ENSG00000132972|Q9BXT8-1|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 MSMS UPN47_class_I_Rep_1 2 481.2410888671875 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 14.096 1 17.571 17.071 18.071 3.475 0 0 0 0.40746 1 488 488 0.69038 0 1 4597 2785 2903 2907 5836 5836 -0.015319761420073519 EAKQSPTLNH 10 Unmodified _EAKQSPTLNH_ 0 0 0 REV__chr13:32375406-32376670|142|10.07|0.4|4.65|+|ENST00000665585|BRCA2,BRCA2 REV__chr13:32375406-32376670|142|10.07|0.4|4.65|+|ENST00000665585|BRCA2,BRCA2 MSMS UPN46_class_I_Rep_3 1 562.7875366210938 2 562.78837 1123.56219 NaN NaN NaN NaN NaN NaN NaN 38.075 1 38.075 37.575 38.575 0 0 0 0 0.53105 1 7220 7220 4.897 0.141 1 + 4598 17437 2904 2908 5837 5837 0.005347519782162635 EAKRWPRSW 9 Unmodified _EAKRWPRSW_ 0 0 0 REV__ENST00000332272.8_1_16:75511593-75511800:-|nuORF REV__ENST00000332272.8_1_16:75511593-75511800:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 405.8841552734375 3 405.884235 1214.63087 -0.045149 -1.8325E-05 0.14919 6.0554E-05 0.10404 4.2229E-05 405.88419889470464 65.415 1.498 68.869 68.278 69.776 3.4541 181 108 3 0 0 0 0.49676 1 14810 14810 0.96228 0.96228 1 268920 + 4599 21785 2905 2909 5838 5838 0.03214461068591845 EAKSDKEF 8 Unmodified _EAKSDKEF_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS UPN47_class_I_Rep_2 3 477.23248291015625 2 477.232364 952.450176 -0.25532 -0.00012185 0.020719 9.8879E-06 -0.2346 -0.00011196 477.2323069848601 27.405 0.48396 30.904 30.668 31.152 3.4986 51 38 2 0 0 0 0.82752 1 4064 4064 3.9444 0.66309 1 65807 + 4600 20562 2906 2910 5839 5839 -0.02795102098764346 EAKSSLFLE 9 Unmodified _EAKSSLFLE_ 0 0 0 REV__ENSG00000183808|ENST00000520560|RBM12B REV__ENSG00000183808|ENST00000520560|RBM12B MSMS UPN47_class_I_Rep_2 3 512.2705688476562 2 512.27149 1022.52843 NaN NaN NaN NaN NaN NaN NaN 41.581 1 44.946 44.446 45.446 3.3655 0 0 0 0.39598 1 8392 8392 1.6526 0 1 + 4601 20801 2907 2911 5840 5840 0.018063304864767815 EALAVVTDVFG 11 Unmodified _EALAVVTDVFG_ 0 0 0 REV__ENSG00000164236|ENST00000296657|ANKRD33B REV__ENSG00000164236|ENST00000296657|ANKRD33B MULTI-MSMS UPN47_class_I_Rep_1 2 560.7979125976562 2 560.797872 1119.58119 0.36088 0.00020238 -0.1399 -7.8457E-05 0.22097 0.00012392 560.7977186247037 55.875 1.1935 59.353 58.902 60.096 3.4785 124 68 2 0 0 0 0.31099 2 12691 12691;12923 32.786 1.5173 1 1280900 + 4602 20044 2908 2912 5841;5842 5841 0.02618288549274439 EALAVVTDVFG 11 Unmodified _EALAVVTDVFG_ 0 0 0 REV__ENSG00000164236|ENST00000296657|ANKRD33B REV__ENSG00000164236|ENST00000296657|ANKRD33B MULTI-MSMS UPN47_class_I_Rep_2 3 560.7980346679688 2 560.797872 1119.58119 0.5183 0.00029066 -0.28619 -0.00016049 0.23211 0.00013017 560.7976228695071 56.108 1.0646 59.409 58.92 59.984 3.3009 116 62 2 0 0 0 0.23238 1 12793 12793 38.176 6.9072 1 1083800 + 4603 20044 2908 2912 5843 5843 0.02618288549274439 EALAVVTDVFG 11 Unmodified _EALAVVTDVFG_ 0 0 0 REV__ENSG00000164236|ENST00000296657|ANKRD33B REV__ENSG00000164236|ENST00000296657|ANKRD33B MULTI-MSMS UPN47_class_I_Rep_3 4 560.7979125976562 2 560.797872 1119.58119 0.39909 0.00022381 -0.21307 -0.00011949 0.18603 0.00010432 560.7976914983144 56.239 1.0597 59.411 58.977 60.036 3.1721 131 69 2 0 0 0 0.31099 1 12938 12938 32.786 1.5173 1 1247000 + 4604 20044 2908 2912 5844 5844 0.02618288549274439 EALEQVHR 8 Unmodified _EALEQVHR_ 0 0 0 REV__nc|ENSG00000100241|O95248|SBF1 REV__nc|ENSG00000100241|O95248|SBF1 MSMS UPN48_class_I_Rep_2 6 491.259521484375 2 491.259248 980.503943 NaN NaN NaN NaN NaN NaN NaN 20.598 1 24.246 23.746 24.746 3.648 0 0 0 0.4044 1 1800 1800 4.756 0 1 + 4605 18098 2909 2913 5845 5845 0.012911151236153273 EALGAVAAEL 10 Unmodified _EALGAVAAEL_ 0 0 0 nc|ENSG00000198920|Q2KHM9-2|KIAA0753;ENSG00000198920|ENST00000361413|KIAA0753 nc|ENSG00000198920|Q2KHM9-2|KIAA0753 nc|ENSG00000198920|Q2KHM9-2|KIAA0753 MULTI-MSMS UPN48_class_I_Rep_2 6 472.2587585449219 2 472.258382 942.502212 0.23788 0.00011234 -0.096775 -4.5703E-05 0.14111 6.6639E-05 472.2582279651877 65.858 0.27305 69.345 69.147 69.42 3.4866 23 17 2 0 0 0 0.52562 1 14968 14968 8.7454 2.5396 1 62829 4606 5485 2910 2914 5846 5846 0.028660613149895653 EALGAVAAEL 10 Unmodified _EALGAVAAEL_ 0 0 0 nc|ENSG00000198920|Q2KHM9-2|KIAA0753;ENSG00000198920|ENST00000361413|KIAA0753 nc|ENSG00000198920|Q2KHM9-2|KIAA0753 nc|ENSG00000198920|Q2KHM9-2|KIAA0753 MULTI-MSMS UPN48_class_I_Rep_3 7 472.2578430175781 2 472.258382 942.502212 0.24546 0.00011592 0.054751 2.5857E-05 0.30021 0.00014178 472.2581767515906 65.833 0.40718 69.341 69.06 69.467 3.5077 31 25 2 0 0 0 0.4965 1 14922 14922 12.241 0.74595 1 78736 4607 5485 2910 2914 5847 5847 0.028660613149895653 EALGVGEVAL 10 Unmodified _EALGVGEVAL_ 0 0 0 nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1 nc|ENSG00000071282|Q9NZU5-2|LMCD1 nc|ENSG00000071282|Q9NZU5-2|LMCD1 MULTI-MSMS UPN47_class_I_Rep_1 2 479.76812744140625 2 479.266207 956.517862 0.15245 7.3062E-05 -0.029531 -1.4153E-05 0.12291 5.8909E-05 479.26610135603914 59.603 0.6454 63.001 62.604 63.25 3.3982 62 42 2 0 0 0 0.41718 1 13885 13885 18.146 1.9972 1 53471 4608 1087 2911 2915 5848 5848 0.03786347832055981 EALKKLIL 8 Unmodified _EALKKLIL_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS UPN47_class_I_Rep_2 3 464.315185546875 2 464.315503 926.616454 -0.32004 -0.0001486 -0.22433 -0.00010416 -0.54437 -0.00025276 464.31527881422824 43.106 1.2618 46.464 46.091 47.353 3.358 176 78 3 0 0 0 0.82752 1 8863 8863 42.095 0 1 387450 4609 1700 2912 2916 5849 5849 0.15020995867757847 EALKLFSR 8 Unmodified _EALKLFSR_ 0 0 0 REV__ENST00000530101.5_1_11:65619099-65623644:+|nuORF REV__ENST00000530101.5_1_11:65619099-65623644:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 482.2717590332031 2 482.284734 962.554916 -0.075074 -3.6207E-05 0.073325 3.5363E-05 -0.0017491 -8.4358E-07 482.28474907615816 26.074 0.079868 26.074 26.044 26.124 0 11 9 2 0 0 0 0.82752 1 3681 3681 5.7319 0 1 24285 + 4610 22834 2913 2917 5850 5850 0.07214064168476853 EALKQKAL 8 Unmodified _EALKQKAL_ 0 0 0 ENST00000531787.5_2_11:60184399-60184972:+|nuORF ENST00000531787.5_2_11:60184399-60184972:+|nuORF ENST00000531787.5_2_11:60184399-60184972:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.7791748046875 2 450.779285 899.544017 -0.14807 -6.6746E-05 0.25481 0.00011486 0.10674 4.8115E-05 450.779314020475 47.646 0.77622 51.341 51.131 51.908 3.6951 96 58 2 0 0 0 0.82752 1 10169 10169 21.747 0 1 355200 4611 7298 2914 2918 5851 5851 0.09022661794188025 EALLELQAYA 10 Unmodified _EALLELQAYA_ 0 0 0 ENST00000489293.5_1_7:116770554-116838385:+|nuORF;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1|ST7 ENST00000489293.5_1_7:116770554-116838385:+|nuORF ENST00000489293.5_1_7:116770554-116838385:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.7978515625 2 560.797872 1119.58119 0.39909 0.00022381 -0.21307 -0.00011949 0.18603 0.00010432 560.7976914983144 56.239 1.0597 59.411 58.977 60.036 3.1721 131 69 2 0 0 0 0.28952 1 12983 12983 34.932 2.1464 1 1247000 4612 688 2915 2919 5852 5852 0.026182885492971764 EALLGVWLCM 10 Unmodified _EALLGVWLCM_ 0 0 0 REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|150|2|anti-sense REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|150|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.78759765625 2 567.787938 1133.56132 0.34281 0.00019464 -0.42937 -0.00024379 -0.086567 -4.9152E-05 567.7874838457409 55.909 0.80462 59.387 59.029 59.833 3.4785 110 46 4 0 0 0 0.46161 2 12697 12697;12740 14.838 2.5976 1 209540 + 4613 28941 2916 2920 5853;5854 5853 -0.00011501986682560528 EALLGVWLCM 10 Unmodified _EALLGVWLCM_ 0 0 0 REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|150|2|anti-sense REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|150|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.7875366210938 2 567.787938 1133.56132 0.51835 0.00029431 -0.74053 -0.00042047 -0.22219 -0.00012615 567.7873587765905 56.122 0.8231 59.422 59.063 59.886 3.3009 112 48 3 0 0 0 0.38932 2 12825 12785;12825 20.454 3.3407 1 272150 + 4614 28941 2916 2920 5855;5856 5856 -0.00011501986682560528 EALLGVWLCM 10 Unmodified _EALLGVWLCM_ 0 0 0 REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|150|2|anti-sense REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|150|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.7872924804688 2 567.787938 1133.56132 0.40061 0.00022746 -0.69828 -0.00039647 -0.29767 -0.00016901 567.7873450991292 56.23 0.77567 59.402 59.055 59.831 3.1721 125 49 4 0 0 0 0.53654 3 12922 12885;12922;12964 7.2892 1.5574 1 349230 + 4615 28941 2916 2920 5857;5858;5859 5858 -0.00011501986682560528 EALLRYVL 8 Unmodified _EALLRYVL_ 0 0 0 ENST00000534767.1_1_11:43919588-43920434:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1 ENST00000534767.1_1_11:43919588-43920434:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1 ENST00000534767.1_1_11:43919588-43920434:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.79486083984375 2 488.794935 975.575317 0.11881 5.8072E-05 -0.10779 -5.2689E-05 0.011013 5.3832E-06 488.7947561873663 65.401 0.84132 68.756 68.421 69.263 3.3557 72 48 2 0 0 0 0.82752 1 15612 15612 11.64 0 1 132520 4616 7320;2626 2917 2921 5860 5860 0.08655234828268021 EALLRYVL 8 Unmodified _EALLRYVL_ 0 0 0 ENST00000534767.1_1_11:43919588-43920434:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1 ENST00000534767.1_1_11:43919588-43920434:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1 ENST00000534767.1_1_11:43919588-43920434:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 488.7947082519531 2 488.794935 975.575317 0.17065 8.3411E-05 -0.052744 -2.5781E-05 0.1179 5.763E-05 488.7946706617474 65.683 0.58707 68.863 68.685 69.272 3.1795 62 33 2 0 0 0 0.82752 2 15800 15800;15842 11.64 0 1 168610 4617 7320;2626 2917 2921 5861;5862 5861 0.08655234828268021 EALMLGAEVP 10 Unmodified _EALMLGAEVP_ 0 0 0 nc|ENSG00000112561|P19484-2|TFEB;ENSG00000112561|ENST00000373033|TFEB nc|ENSG00000112561|P19484-2|TFEB nc|ENSG00000112561|P19484-2|TFEB MULTI-MSMS UPN48_class_I_Rep_1 5 515.2693481445312 2 515.267893 1028.52123 0.28345 0.00014605 0.017468 9.0005E-06 0.30092 0.00015505 515.2678011432038 74.645 0.74084 78.135 77.828 78.569 3.49 192 78 3 0 0 0 0.31818 1 17663 17663 27.629 10.516 1 869660 4618 2017 2918 2922 5863 5863 0.00811274614420654 EALMLGAEVP 10 Unmodified _EALMLGAEVP_ 0 0 0 nc|ENSG00000112561|P19484-2|TFEB;ENSG00000112561|ENST00000373033|TFEB nc|ENSG00000112561|P19484-2|TFEB nc|ENSG00000112561|P19484-2|TFEB MULTI-MSMS UPN48_class_I_Rep_3 7 515.2675170898438 2 515.267893 1028.52123 0.38564 0.00019871 1.5178 0.00078208 1.9034 0.00098079 515.2685991692604 74.586 0.48325 78.136 78.011 78.494 3.5505 127 50 3 0 0 0 0.3776 1 17471 17471 21.537 4.4241 1 834150 4619 2017 2918 2922 5864 5864 0.00811274614420654 EALPKQSV 8 Unmodified _EALPKQSV_ 0 0 0 nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3 nc|ENSG00000145741|P20290-2|BTF3 nc|ENSG00000145741|P20290-2|BTF3 MULTI-MSMS UPN47_class_I_Rep_3 4 436.2477111816406 2 436.247818 870.481082 -1.0682 -0.00046599 0.73552 0.00032087 -0.33267 -0.00014513 436.2480134732439 26.96 0.62326 30.302 29.968 30.591 3.3422 87 54 2 0 0 0 0.82752 1 4009 4009 13.906 3.0821 1 85437 4620 3410 2919 2923 5865 5865 0.040660960061472906 EALQERCTMP 10 Unmodified _EALQERCTMP_ 0 0 0 ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|13|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|1|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|5|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|7|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|2|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|3|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|8|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|4|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|14|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|10|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|9|intron;ENSG00000168014|ENST00000334126|C2CD3;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|6|intron;ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|12|intron ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|13|intron ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|13|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 588.7689208984375 2 589.270641 1176.52673 -0.046276 -2.7269E-05 2.0881 0.0012305 2.0419 0.0012032 589.2707254554323 39.052 0.046062 42.29 42.263 42.309 3.238 5 3 2 0 0 0 0.84575 1 7674 7674 2.4985 0.65425 1 37689 4621 4344 2920 2924 5866 5866 -0.05447369865441942 EALQRALEMS 10 Unmodified _EALQRALEMS_ 0 0 0 ENST00000486734.5_1_2:220072724-220073377:+|nuORF;ENST00000464902.5_1_2:220071990-220073377:+|nuORF;ENSG00000158552|ENST00000289528|ZFAND2B;ENST00000475533.1_1_2:220071990-220074025:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 574.7951049804688 2 574.29243 1146.57031 0.39675 0.00022785 -1.9498 -0.0011198 -1.5531 -0.00089192 574.7951545845409 59.679 0.63742 63.077 62.806 63.444 3.3982 58 38 2 0 0 0 0.48573 1 13888 13888 13.042 2.243 1 120860 4622 7040 2921 2925 5867 5867 0.0028856290334715595 EALRLFQDR 9 Unmodified _EALRLFQDR_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN47_class_I_Rep_1 2 574.3154296875 2 574.314554 1146.61456 NaN NaN NaN NaN NaN NaN NaN 25.982 1 29.744 29.244 30.244 3.7624 0 0 0 0.3967 1 3650 3650 1.4819 0 1 4623 5346 2922 2926 5868 5868 0.04711335111846893 EALRRPINR 9 Unmodified _EALRRPINR_ 0 0 0 REV__ENST00000589827.5_1_17:75085247-75138744:+|nuORF REV__ENST00000589827.5_1_17:75085247-75138744:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 562.3355102539062 2 562.835988 1123.65742 0.43843 0.00024676 2.0966 0.0011801 2.5351 0.0014268 562.8363902719715 109.33 0.49717 112.96 112.89 113.39 3.6321 102 63 2 0 0 0 0.12321 1 26563 26563 3.9444 0.3479 1 1383000 + 4624 23029 2923 2927 5869 5869 0.10054149959933056 EALTALGLTA 10 Unmodified _EALTALGLTA_ 0 0 0 L1MA3_dup6258|chr11:6579554-6581749:+|1.20910028558177|0.0604464226281136|4.32|151.0|84|1|anti-sense L1MA3_dup6258|chr11:6579554-6581749:+|1.20910028558177|0.0604464226281136|4.32|151.0|84|1|anti-sense L1MA3_dup6258|chr11:6579554-6581749:+|1.20910028558177|0.0604464226281136|4.32|151.0|84|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.2738037109375 2 480.274032 958.533512 0.0098888 4.7493E-06 -0.45143 -0.00021681 -0.44154 -0.00021206 480.2739543906561 50.983 0.71586 54.576 54.297 55.013 3.5933 76 34 3 0 0 0 0.43106 1 11181 11181 17.113 0 1 146590 4625 9584 2924 2928 5870 5870 0.052586343490816034 EALTHNSIY 9 Unmodified _EALTHNSIY_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MULTI-MSMS UPN47_class_I_Rep_1 2 524.7600708007812 2 524.258914 1046.50327 -0.02922 -1.5319E-05 0.043422 2.2764E-05 0.014202 7.4453E-06 524.76064347765 43.035 0.61359 46.722 46.424 47.038 3.6875 78 42 2 0 0 0 0.21527 1 8793 8793 19.257 4.4187 1 96024 + 4626 20313 2925 2929 5871 5871 -0.018117243160759244 EALTHNSIY 9 Unmodified _EALTHNSIY_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MULTI-MSMS UPN47_class_I_Rep_3 4 524.760986328125 2 524.258914 1046.50327 0.036957 1.9375E-05 0.11177 5.8597E-05 0.14873 7.7972E-05 524.2587501338238 43.43 0.6374 46.672 46.357 46.995 3.2419 67 40 2 0 0 0 0.43153 1 8971 8971 6.2058 0.47393 1 106440 + 4627 20313 2925 2929 5872 5872 -0.018117243160759244 EALTRKNK 8 Unmodified _EALTRKNK_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MSMS UPN47_class_I_Rep_2 3 480.27374267578125 2 480.285266 958.555979 NaN NaN NaN NaN NaN NaN NaN 51.242 1 54.58 54.08 55.08 3.3386 0 0 0 0.39819 1 11334 11334 8.5933 0 1 4628 4577 2926 2930 5873 5873 0.07504278537373921 EALVGDQLL 9 Unmodified _EALVGDQLL_ 0 0 0 REV__nc|ENSG00000109118|Q96QT6-4|PHF12 REV__nc|ENSG00000109118|Q96QT6-4|PHF12 MSMS UPN47_class_I_Rep_3 4 479.26617431640625 2 479.266207 956.517862 NaN NaN NaN NaN NaN NaN NaN 59.76 1 62.925 62.425 63.425 3.1651 0 0 0 0.38073 1 13985 13985 5.2969 0 1 + 4629 18402 2927 2931 5874 5874 0.03786347832055981 EALVRTVL 8 Unmodified _EALVRTVL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_1 2 450.77935791015625 2 450.779285 899.544017 -0.14807 -6.6746E-05 0.25481 0.00011486 0.10674 4.8115E-05 450.779314020475 47.646 0.77622 51.341 51.131 51.908 3.6951 96 58 2 0 0 0 0.82752 1 10244 10244 30.637 6.616 1 355200 4630 4348 2928 2932 5875 5875 0.09022661794188025 EALVRTVL 8 Unmodified _EALVRTVL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.7792053222656 2 450.779285 899.544017 -0.24932 -0.00011239 0.16642 7.5021E-05 -0.082891 -3.7365E-05 450.77923504288503 48.022 0.76893 51.371 51.143 51.912 3.3492 91 47 3 0 0 0 0.82752 1 10331 10331 34.402 0 1 300140 4631 4348 2928 2932 5876 5876 0.09022661794188025 EALVRTVL 8 Unmodified _EALVRTVL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_3 4 450.77886962890625 2 450.779285 899.544017 -0.28801 -0.00012983 0.11219 5.0574E-05 -0.17582 -7.9254E-05 450.77922538542845 48.264 0.83508 51.504 51.164 51.999 3.2405 97 47 3 0 0 0 0.82752 1 10463 10463 36.127 3.8215 1 306650 4632 4348 2928 2932 5877 5877 0.09022661794188025 EALVSLRL 8 Unmodified _EALVSLRL_ 0 0 0 REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|10|1|sense REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.779296875 2 450.779285 899.544017 -0.14807 -6.6746E-05 0.25481 0.00011486 0.10674 4.8115E-05 450.779314020475 47.646 0.77622 51.341 51.131 51.908 3.6951 96 58 2 0 0 0 0.82752 1 10204 10204 18.146 0 1 355200 + 4633 28028 2929 2933 5878 5878 0.09022661794188025 EALVSLRL 8 Unmodified _EALVSLRL_ 0 0 0 REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|10|1|sense REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.779052734375 2 450.779285 899.544017 -0.24932 -0.00011239 0.16642 7.5021E-05 -0.082891 -3.7365E-05 450.77923504288503 48.022 0.76893 51.371 51.143 51.912 3.3492 91 47 3 0 0 0 0.82752 1 10418 10418 13.906 0 1 300140 + 4634 28028 2929 2933 5879 5879 0.09022661794188025 EALVSLRL 8 Unmodified _EALVSLRL_ 0 0 0 REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|10|1|sense REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 450.7789001464844 2 450.779285 899.544017 -0.28801 -0.00012983 0.11219 5.0574E-05 -0.17582 -7.9254E-05 450.77922538542845 48.264 0.83508 51.504 51.164 51.999 3.2405 97 47 3 0 0 0 0.82752 1 10506 10506 18.146 0 1 306650 + 4635 28028 2929 2933 5880 5880 0.09022661794188025 EALWVNVTS 9 Unmodified _EALWVNVTS_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-2|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MSMS UPN47_class_I_Rep_3 4 509.7925720214844 2 509.763832 1017.51311 NaN NaN NaN NaN NaN NaN NaN 38.984 1 42.222 41.722 42.722 3.238 0 0 0 0.38784 1 7651 7651 3.5965 0 1 4636 16742 2930 2934 5881 5881 0.0050546368928507945 EAMFFCSIGDN 11 Unmodified _EAMFFCSIGDN_ 0 0 0 REV__L1MA1_dup4181|chr22:47184258-47187042:+|2.682896686929209|0.2199511109407242|3.61|151.0|135|2|anti-sense REV__L1MA1_dup4181|chr22:47184258-47187042:+|2.682896686929209|0.2199511109407242|3.61|151.0|135|2|anti-sense MSMS UPN47_class_I_Rep_2 3 617.2511596679688 2 617.249374 1232.4842 NaN NaN NaN NaN NaN NaN NaN 41.396 1 44.761 44.261 45.261 3.3655 0 0 0 0.38417 1 8339 8339 2.2828 0.22302 1 + 4637 24803 2931 2935 5882 5882 -0.1227476499364002 EANLFENL 8 Unmodified _EANLFENL_ 0 0 0 REV__L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|284|2|anti-sense REV__L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|284|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 475.2348327636719 2 475.234907 948.455261 0.1162 5.522E-05 -0.28915 -0.00013741 -0.17295 -8.2192E-05 475.2346990943173 57.756 0.66867 61.193 60.934 61.603 3.437 78 44 2 0 0 0 0.82752 1 13381 13381 7.2892 0 1 192020 + 4638 29748 2932 2936 5883 5883 -0.021027982361488284 EANPTAHY 8 Unmodified _EANPTAHY_ 0 0 0 ENSG00000182636|ENST00000649030|NDN ENSG00000182636|ENST00000649030|NDN ENSG00000182636|ENST00000649030|NDN MULTI-MSMS UPN47_class_I_Rep_2 3 451.70330810546875 2 451.703774 901.392996 -0.53935 -0.00024363 -0.081672 -3.6892E-05 -0.62102 -0.00028052 451.70364194612114 23.731 0.58266 27.197 26.99 27.573 3.4655 69 48 2 0 0 0 0.82752 1 3097 3097 8.5933 0.68312 1 62731 4639 4965 2933 2937 5884 5884 -0.06164524584482933 EAPCHRHYRHE 11 Unmodified _EAPCHRHYRHE_ 0 0 0 REV__ENSG00000150244|ENST00000417545|TRIM48 REV__ENSG00000150244|ENST00000417545|TRIM48 MULTI-MSMS UPN47_class_I_Rep_2 3 479.55523681640625 3 478.88631 1433.6371 -0.23377 -0.00011195 -2.2556 -0.0010802 -2.4893 -0.0011921 479.55502534632325 37.25 0.74742 40.649 40.305 41.053 3.3988 131 55 5 0 0 0 0.67113 1 7052 7052 1.3296 0.11481 1 143560 + 4640 19629 2934 2938 5885 5885 -0.062373887621788526 EAPEEVEVL 9 Unmodified _EAPEEVEVL_ 0 0 0 ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000178988|ENST00000320848|MRFAP1L1 MULTI-MSMS UPN48_class_I_Rep_2 6 508.30206298828125 2 507.75313 1013.49171 0.42233 0.00021444 -0.33885 -0.00017205 0.083481 4.2388E-05 507.7528740133714 54.822 0.57443 58.403 58.056 58.631 3.5817 56 35 2 0 0 0 0.15122 1 11601 11601 25.399 0 1 165070 4641 4840 2935 2939 5886 5886 -0.014499661300874322 EAPEEVEVL 9 Unmodified _EAPEEVEVL_ 0 0 0 ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000178988|ENST00000320848|MRFAP1L1 MULTI-MSMS UPN48_class_I_Rep_3 7 507.7528381347656 2 507.75313 1013.49171 0.14071 7.1447E-05 -0.095991 -4.874E-05 0.044721 2.2707E-05 507.7529882580477 54.781 0.52143 58.351 58.125 58.646 3.5694 55 33 2 0 0 0 0.15122 1 11516 11516 25.399 0 1 196170 4642 4840 2935 2939 5887 5887 -0.014499661300874322 EAPGNLRLY 9 Unmodified _EAPGNLRLY_ 0 0 0 ENST00000563381.5_1_16:74923599-74938045:-|nuORF;nc|ENSG00000103091|Q6PJI9-4|WDR59;nc|ENSG00000103091|Q6PJI9-3|WDR59;ENSG00000103091|ENST00000262144|WDR59 ENST00000563381.5_1_16:74923599-74938045:-|nuORF ENST00000563381.5_1_16:74923599-74938045:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 516.7775268554688 2 516.777274 1031.53999 -0.13514 -6.9835E-05 0.89295 0.00046145 0.75781 0.00039162 516.7777992693493 40.676 0.64757 44.348 44.032 44.679 3.6719 72 55 2 0 0 0 0.30034 3 8078 8078;8116;8168 13.906 8.7454 1 89740 4643 1644 2936 2940 5888;5889;5890 5888 0.02548572300474916 EAPHRPIY 8 Unmodified _EAPHRPIY_ 0 0 0 REV__MER44B_dup1413|chr10:38024677-38025195:+|1.9125301717934573|0.06339217744399|4.92|151.0|22|1|anti-sense REV__MER44B_dup1413|chr10:38024677-38025195:+|1.9125301717934573|0.06339217744399|4.92|151.0|22|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 492.3006591796875 2 491.758884 981.503215 0.15554 7.6489E-05 -0.00051704 -2.5426E-07 0.15502 7.6235E-05 491.7588098831894 47.115 0.43341 50.467 50.294 50.727 3.3515 33 27 2 0 0 0 0.72333 1 10094 10094 5.2307 0.47466 1 47172 + 4644 31315 2937 2941 5891 5891 0.011723204745635485 EAPNQEKVSDY 11 Unmodified _EAPNQEKVSDY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-SECPEP UPN47_class_I_Rep_2 3 639.749267578125 2 640.293682 1278.57281 0.51904 0.00033234 -0.4208 -0.00026944 0.098246 6.2906E-05 640.2936620259366 58.137 0.12142 61.428 61.343 61.464 3.2912 9 8 2 0 0 0 22.551 1 13440 13440 6.6304 3.0339 1 49756 4645 2768 2938 2942 5892 5892 -0.05533310157966298 EAPPLAPMPK 10 Unmodified _EAPPLAPMPK_ 0 0 0 REV__ENST00000356728.10_1_1:151787708-151789240:-|nuORF REV__ENST00000356728.10_1_1:151787708-151789240:-|nuORF MSMS UPN48_class_I_Rep_2 6 525.8060913085938 2 525.786253 1049.55795 NaN NaN NaN NaN NaN NaN NaN 40.235 1 43.976 43.476 44.476 3.7413 0 0 0 0.53105 1 7224 7224 5.7319 0.43497 1 + 4646 21869 2939 2943 5893 5893 0.03515571230968817 EAPPSLNPRY 10 Unmodified _EAPPSLNPRY_ 0 0 0 REV__ENSG00000143373|ENST00000336715|ZNF687 REV__ENSG00000143373|ENST00000336715|ZNF687 MULTI-MSMS UPN47_class_I_Rep_3 4 572.2943725585938 2 572.293288 1142.57202 -0.099531 -5.6961E-05 -0.11465 -6.5613E-05 -0.21418 -0.00012257 572.2932213963009 35.617 0.86015 38.872 38.531 39.391 3.2547 107 56 3 0 0 0 0.56078 1 6694 6694 3.2813 3.2813 1 173070 + 4647 19442 2940 2944 5894 5894 0.006439399836153825 EAPTGSSLW 9 Unmodified _EAPTGSSLW_ 0 0 0 REV__ENST00000355530.6_1_17:4389827-4391457:+|nuORF REV__ENST00000355530.6_1_17:4389827-4391457:+|nuORF MSMS UPN48_class_I_Rep_2 6 474.22479248046875 2 474.227082 946.439611 NaN NaN NaN NaN NaN NaN NaN 105.44 1 109.13 108.63 109.63 3.6901 0 0 0 0.35339 1 24942 24942 7.9102 1.7044 1 + 4648 21863 2941 2945 5895 5895 -0.0357508475318582 EAQLGRERRL 10 Unmodified _EAQLGRERRL_ 0 0 0 REV__ENSG00000089820|ENST00000350060|ARHGAP4 REV__ENSG00000089820|ENST00000350060|ARHGAP4 MSMS UPN46_class_I_Rep_3 1 614.3491821289062 2 614.34946 1226.68437 NaN NaN NaN NaN NaN NaN NaN 72.625 1 72.625 72.125 73.125 0 0 0 0 0.53105 1 16794 16794 2.9952 0 1 + 4649 18009 2942 2946 5896 5896 0.08009213780451319 EAQLGRERRL 10 Unmodified _EAQLGRERRL_ 0 0 0 REV__ENSG00000089820|ENST00000350060|ARHGAP4 REV__ENSG00000089820|ENST00000350060|ARHGAP4 MSMS UPN46_class_I_Rep_3 1 614.3494262695312 2 614.34946 1226.68437 NaN NaN NaN NaN NaN NaN NaN 73.497 1 73.497 72.997 73.997 0 0 0 0 0.53105 1 17038 17038 9.3831 0 1 + 4650 18009 2942 2946 5897 5897 0.08009213780451319 EAQLGRERRL 10 Unmodified _EAQLGRERRL_ 0 0 0 REV__ENSG00000089820|ENST00000350060|ARHGAP4 REV__ENSG00000089820|ENST00000350060|ARHGAP4 MSMS UPN47_class_I_Rep_2 3 614.3500366210938 2 614.34946 1226.68437 NaN NaN NaN NaN NaN NaN NaN 62.009 1 65.269 64.769 65.769 3.2594 0 0 0 0.53105 1 14614 14614 2.9952 0 1 + 4651 18009 2942 2946 5898 5898 0.08009213780451319 EAQLKLKE 8 Unmodified _EAQLKLKE_ 0 0 0 REV__chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8 REV__chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8 MSMS UPN47_class_I_Rep_2 3 479.7826232910156 2 479.782025 957.549496 NaN NaN NaN NaN NaN NaN NaN 36.829 1 40.228 39.728 40.728 3.3988 0 0 0 0.40604 1 6954 6954 2.5775 0 1 + 4652 17458 2943 2947 5899 5899 0.06902340585986622 EAQNLVEF 8 Unmodified _EAQNLVEF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-SECPEP UPN47_class_I_Rep_3 4 474.7784423828125 2 475.234907 948.455261 -0.067142 -3.1908E-05 0.0010318 4.9033E-07 -0.066111 -3.1418E-05 475.2348612248724 58.154 0.79835 61.321 60.931 61.729 3.1666 90 53 2 0 0 0 0.72333 1 13400 13400 4.756 0 1 234060 4653 4997 2944 2948 5900 5900 -0.021027982361374598 EARNLHNKWLK 11 Unmodified _EARNLHNKWLK_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MSMS UPN47_class_I_Rep_3 4 470.2647705078125 3 470.265115 1407.77352 NaN NaN NaN NaN NaN NaN NaN 24.819 1 28.17 27.67 28.67 3.3509 0 0 0 0.38417 1 3391 3391 1.0136 0.23704 1 4654 1067 2945 2949 5901 5901 0.08594048739973914 EASIRFALL 9 Unmodified _EASIRFALL_ 0 0 0 REV__L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|169|2|anti-sense REV__L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|169|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.298095703125 2 510.297842 1018.58113 -0.18182 -9.2783E-05 -0.059063 -3.0139E-05 -0.24088 -0.00012292 510.2976992187249 37.77 0.50599 41.435 41.215 41.721 3.6652 51 38 2 0 0 0 0.42249 1 7232 7232 6.7232 0 1 58804 + 4655 30720 2946 2950 5902 5902 0.07258333339939327 EASIYTGITPP 11 Unmodified _EASIYTGITPP_ 0 0 0 REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|5|1|sense REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7957763671875 2 574.795329 1147.5761 0.32632 0.00018757 0.048955 2.8139E-05 0.37527 0.0002157 574.7952462946322 55.235 0.56689 58.713 58.452 59.019 3.4785 58 33 2 0 0 0 0.30462 4 12489 12489;12528;12573;12586 15.248 0 1 143170 + 4656 27037 2947 2951 5903;5904;5905;5906 5903 0.008219846866495573 EASIYTGITPP 11 Unmodified _EASIYTGITPP_ 0 0 0 REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|5|1|sense REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.79541015625 2 574.795329 1147.5761 0.51794 0.00029771 0.060428 3.4734E-05 0.57837 0.00033244 574.7952677023541 55.516 0.75402 58.826 58.51 59.264 3.3102 88 43 3 0 0 0 0.30462 1 12626 12626 15.248 0 1 179710 + 4657 27037 2947 2951 5907 5907 0.008219846866495573 EASIYTGITPP 11 Unmodified _EASIYTGITPP_ 0 0 0 REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|5|1|sense REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7960205078125 2 574.795329 1147.5761 0.41878 0.00024071 -0.030905 -1.7764E-05 0.38788 0.00022295 574.7952615393641 55.632 0.65146 58.81 58.491 59.143 3.1779 91 40 3 0 0 0 0.37961 2 12681 12681;12763 10.8 0 1 170450 + 4658 27037 2947 2951 5908;5909 5908 0.008219846866495573 EASLVLQQL 9 Unmodified _EASLVLQQL_ 0 0 0 REV__nc|ENSG00000290691|A6NGW2|STRCP1 REV__nc|ENSG00000290691|A6NGW2|STRCP1 MSMS UPN47_class_I_Rep_1 2 500.7873840332031 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 80.806 1 84.294 83.794 84.794 3.4874 0 0 0 0.37476 1 20142 20142 6.7232 0 1 + 4659 21332 2948 2952 5910 5910 0.060263232404167866 EASLVLQQL 9 Unmodified _EASLVLQQL_ 0 0 0 REV__nc|ENSG00000290691|A6NGW2|STRCP1 REV__nc|ENSG00000290691|A6NGW2|STRCP1 MSMS UPN47_class_I_Rep_2 3 500.7870178222656 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 81.009 1 84.393 83.893 84.893 3.3839 0 0 0 0.25702 1 20171 20171 13.042 0 1 + 4660 21332 2948 2952 5911 5911 0.060263232404167866 EASWPGQQ 8 Unmodified _EASWPGQQ_ 0 0 0 ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENST00000583264.1_1_17:21101639-21117457:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 451.70343017578125 2 451.703774 901.392996 -0.94492 -0.00042682 0.23794 0.00010748 -0.70698 -0.00031935 451.70379501620243 23.906 0.61951 27.257 27.041 27.66 3.3509 74 46 2 0 0 0 0.82752 2 3095 3095;3137 11.64 0 1 67091 4661 7568 2949 2953 5912;5913 5912 -0.061645245844715646 EASYMASDRTY 11 Unmodified _EASYMASDRTY_ 0 0 0 nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805 nc|ENSG00000204524|Q5CZA5-2|ZNF805 nc|ENSG00000204524|Q5CZA5-2|ZNF805 MULTI-MSMS UPN47_class_I_Rep_1 2 431.85205078125 3 431.852049 1292.53432 -0.3929 -0.00016967 0.15854 6.8466E-05 -0.23436 -0.00010121 431.852063790895 39.742 1.5409 43.409 42.972 44.513 3.6668 369 118 4 0 0 0 0.52578 1 7793 7793 3.5927 0.52041 1 988800 4662 5527 2950 2954 5914 5914 -0.10024939064169303 EASYMASDRTY 11 Unmodified _EASYMASDRTY_ 0 0 0 nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805 nc|ENSG00000204524|Q5CZA5-2|ZNF805 nc|ENSG00000204524|Q5CZA5-2|ZNF805 MULTI-MATCH UPN48_class_I_Rep_2 6 3 431.852049 1292.53432 0.040304 1.7405E-05 0.14166 6.1176E-05 0.18196 7.8582E-05 431.85205758714574 40.031 1.1072 43.772 43.369 44.477 3.7413 0.1071 9.1537E-06 NaN 3.5927 252 116 3 NaN NaN NaN NaN 0 NaN NaN 0 439190 4663 5527 2950 2954 -0.10024939064169303 EASYMASDRTY 11 Unmodified _EASYMASDRTY_ 0 0 0 nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805 nc|ENSG00000204524|Q5CZA5-2|ZNF805 nc|ENSG00000204524|Q5CZA5-2|ZNF805 MULTI-MATCH UPN48_class_I_Rep_3 7 3 431.852049 1292.53432 0.043873 1.8947E-05 0.080736 3.4866E-05 0.12461 5.3813E-05 431.8520089927281 40.163 1.1089 43.814 43.399 44.508 3.6509 0.14874 -6.9778E-05 NaN 3.5927 274 105 3 NaN NaN NaN NaN 0 NaN NaN 0 433970 4664 5527 2950 2954 -0.10024939064169303 EASYQAHP 8 Unmodified _EASYQAHP_ 0 0 0 ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 451.703369140625 2 451.703774 901.392996 -0.53935 -0.00024363 -0.081672 -3.6892E-05 -0.62102 -0.00028052 451.70364194612114 23.731 0.58266 27.197 26.99 27.573 3.4655 69 48 2 0 0 0 0.82752 2 3045 3011;3045 23.148 0 1 62731 4665 7324 2951 2955 5915;5916 5916 -0.06164524584482933 EATHPEAG 8 Unmodified _EATHPEAG_ 0 0 0 REV__Tigger2_dup2484|chr17:20414390-20414594:-|1.0255612039892743|0.1511176556132147|2.76|146.0|13|2|anti-sense REV__Tigger2_dup2484|chr17:20414390-20414594:-|1.0255612039892743|0.1511176556132147|2.76|146.0|13|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 406.1825256347656 2 406.182675 810.350796 -0.40609 -0.00016495 0.23808 9.6705E-05 -0.16801 -6.8243E-05 406.1826665633863 20.389 0.99755 20.389 20.114 21.111 0 160 107 3 0 0 0 0.82752 1 2175 2175 18.135 4.6271 1 262520 + 4666 32659 2952 2956 5917 5917 -0.06196499992847748 EATYFFLII 9 Unmodified _EATYFFLII_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|75|1|anti-sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|75|1|anti-sense MSMS UPN47_class_I_Rep_2 3 559.23779296875 2 558.802426 1115.5903 NaN NaN NaN NaN NaN NaN NaN 24.469 1 27.935 27.435 28.435 3.4655 0 0 0 0.39428 1 3247 3247 2.0598 0 1 + 4667 25251 2953 2957 5918 5918 0.03712681905631143 EAVGREALEL 10 Unmodified _EAVGREALEL_ 0 0 0 nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENSG00000125247.16,TMTC4,chr13,-,I18.1,100606428,100612397|24|5.54|3|intron;ENSG00000125247.16,TMTC4,chr13,-,I18.1,100606428,100612397|24|5.54|1|intron;nc|ENSG00000125247|Q5T4D3-4|TMTC4 nc|ENSG00000125247|Q5T4D3|TMTC4 nc|ENSG00000125247|Q5T4D3|TMTC4 MULTI-MSMS UPN48_class_I_Rep_3 7 543.7933959960938 2 543.793121 1085.57169 0.38967 0.0002119 -0.17361 -9.441E-05 0.21606 0.00011749 543.7930878931583 50.342 0.5892 53.963 53.8 54.39 3.621 61 36 2 0 0 0 0.41414 1 10189 10189 18.373 2.224 1 207760 4668 2497 2954 2958 5919 5919 0.0323252026373666 EAVSKTAL 8 Unmodified _EAVSKTAL_ 0 0 0 nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST nc|ENSG00000084093|Q13127-4|REST nc|ENSG00000084093|Q13127-4|REST MULTI-MSMS UPN46_class_I_Rep_3 1 409.7345275878906 2 409.734543 817.454533 -0.16454 -6.7417E-05 0.048239 1.9765E-05 -0.1163 -4.7652E-05 409.73448430535535 31.352 0.83801 31.352 31.02 31.858 0 106 61 3 0 0 0 0.82752 1 5214 5214 30.225 1.738 1 241590 4669 1251 2955 2959 5920 5920 0.03850407114805421 EAVTEIIKK 9 Unmodified _EAVTEIIKK_ 0 0 0 REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 515.8104858398438 2 515.810782 1029.60701 0.30853 0.00015914 -0.37952 -0.00019576 -0.070993 -3.6619E-05 515.8104788357242 37.412 0.84097 41.114 40.81 41.651 3.7021 147 88 2 0 0 0 0.43153 1 6496 6496 6.2058 0.47393 1 260830 + 4670 19498 2956 2960 5921 5921 0.09339182791586609 EAVTLYLAAA 10 Unmodified _EAVTLYLAAA_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|2|intron;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|1|intron ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MSMS UPN47_class_I_Rep_3 4 511.2818603515625 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 80.825 1 84.134 83.634 84.634 3.309 0 0 0 0.53105 1 20217 20217 4.3292 0 1 4671 1994 2957 2961 5922 5922 0.03970920866117922 EAWTLTRAF 9 Unmodified _EAWTLTRAF_ 0 0 0 ENST00000578975.1_1_19:40747718-40748063:-|nuORF;ENST00000487537.2_1_19:40747718-40761168:-|nuORF ENST00000578975.1_1_19:40747718-40748063:-|nuORF ENST00000578975.1_1_19:40747718-40748063:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 547.7850952148438 2 547.785099 1093.55564 0.46855 0.00025666 -0.13002 -7.1223E-05 0.33853 0.00018544 547.7850147900374 51.964 0.1799 55.487 55.364 55.544 3.5227 25 17 2 0 0 0 0.28552 1 10760 10760 14.838 0.93222 1 182470 4672 7043 2958 2962 5923 5923 0.012608588174998658 EAYERYRYRE 10 Unmodified _EAYERYRYRE_ 0 0 0 REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF MSMS UPN47_class_I_Rep_2 3 478.8820495605469 3 478.896869 1433.66878 NaN NaN NaN NaN NaN NaN NaN 37.089 1 40.488 39.988 40.988 3.3988 0 0 0 0.53105 1 7032 7032 1.9064 0.57673 1 + 4673 19506 2959 2963 5924 5924 -0.030711175272472246 EAYERYRYRE 10 Unmodified _EAYERYRYRE_ 0 0 0 REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 478.8946838378906 3 478.896869 1433.66878 -0.45262 -0.00021676 -3.406 -0.0016311 -3.8586 -0.0018479 478.8948369439959 37.041 0.16412 40.288 40.172 40.336 3.247 15 13 2 0 0 0 0.56454 1 7057 7057 0.62683 0.17231 1 56141 + 4674 19506 2959 2963 5925 5925 -0.030711175272472246 EAYPFVRWM 9 Unmodified _EAYPFVRWM_ 0 0 0 REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF MSMS UPN48_class_I_Rep_2 6 599.7896118164062 2 599.789327 1197.5641 NaN NaN NaN NaN NaN NaN NaN 112.66 1 116.33 115.83 116.83 3.6648 0 0 0 0.39428 1 26856 26856 2.0598 0 1 + 4675 20685 2960 2964 5926 5926 -0.02677910537522621 ECALWSCWVK 10 Unmodified _ECALWSCWVK_ 0 0 0 L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|123|1|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|123|1|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|123|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 612.7803344726562 2 612.780644 1223.54674 0.041314 2.5316E-05 -0.63919 -0.00039168 -0.59788 -0.00036637 612.7801780183967 41.782 0.55984 45.461 45.159 45.719 3.6792 68 40 2 0 0 0 0.56155 1 8384 8384 2.7352 1.0826 1 89182 4676 15230 2961 2965 5927 5927 -0.05609574134837203 ECCCCCCEECI 11 Unmodified _ECCCCCCEECI_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 620.6510620117188 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 38.017 1 41.733 41.233 42.233 3.7164 0 0 0 0.38417 1 6572 6572 0 0 1 4677 4486 2962 2966 5928 5928 -0.3233725817779032 ECCCCCCEECI 11 Unmodified _ECCCCCCEECI_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.6510620117188 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.934 1 41.594 41.094 42.094 3.6595 0 0 0 0.38417 1 6455 6455 0 0 1 4678 4486 2962 2966 5929 5929 -0.3233725817779032 ECCCCCCEECI 11 Unmodified _ECCCCCCEECI_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.6514892578125 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.959 1 41.618 41.118 42.118 3.6595 0 0 0 0.38417 1 6462 6462 0 0 1 4679 4486 2962 2966 5930 5930 -0.3233725817779032 ECCDAMDGYT 10 Unmodified _ECCDAMDGYT_ 0 0 0 REV__CON__P02769 REV__CON__P02769 MSMS UPN48_class_I_Rep_3 7 554.1766357421875 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 24.898 1 28.667 28.167 29.167 3.769 0 0 0 0.53105 1 2952 2952 0.40072 0.40072 1 + + 4680 17476 2963 2967 5931 5931 -0.21343238958866095 ECEAGSTYANQ 11 Unmodified _ECEAGSTYANQ_ 0 0 0 L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|149|3|sense L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|149|3|sense L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|149|3|sense MSMS UPN47_class_I_Rep_2 3 586.7298583984375 2 586.72986 1171.44517 NaN NaN NaN NaN NaN NaN NaN 29.376 1 32.869 32.369 33.369 3.4923 0 0 0 0.38417 1 4695 4695 1.0715 0.27783 1 4681 14577 2964 2968 5932 5932 -0.13369774023681202 ECEAPCCSCCS 11 Unmodified _ECEAPCCSCCS_ 0 0 0 REV__ENSG00000087250|ENST00000200691|MT3 REV__ENSG00000087250|ENST00000200691|MT3 MSMS UPN48_class_I_Rep_3 7 567.6566162109375 2 567.65508 1133.29561 NaN NaN NaN NaN NaN NaN NaN 110.42 1 114.09 113.59 114.59 3.67 0 0 0 0.38417 1 26202 26202 0 0 1 + 4682 17975 2965 2969 5933 5933 -0.26570825225462613 ECEDGTYSPEI 11 Unmodified _ECEDGTYSPEI_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MSMS UPN48_class_I_Rep_1 5 621.7454223632812 2 621.745176 1241.4758 0.54353 0.00033794 0.42601 0.00026487 0.96954 0.00060281 621.7455031024854 58.147 0.49701 61.634 61.347 61.844 3.487 47 27 2 0 0 0 0.65559 1 12619 12619 2.7352 0.89096 1 173930 4683 3731 2966 2970 5934 5934 -0.13528040429287103 ECESPHGYYY 10 Unmodified _ECESPHGYYY_ 0 0 0 REV__L1MB7_dup4964|chr3:171634773-171635965:-|1.5447864696543567|0.0735510956343897|4.39|151.0|80|3|anti-sense REV__L1MB7_dup4964|chr3:171634773-171635965:-|1.5447864696543567|0.0735510956343897|4.39|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 624.6415405273438 2 624.237321 1246.46009 NaN NaN NaN NaN NaN NaN NaN 100.08 1 103.58 103.08 104.08 3.4974 0 0 0 0.53105 1 24487 24487 1.6526 0 1 + 4684 26275 2967 2971 5935 5935 -0.15328282155678608 ECFFLGADHVV 11 Unmodified _ECFFLGADHVV_ 0 0 0 ENSG00000115392|ENST00000233741|FANCL;nc|ENSG00000115392|Q9NW38-2|FANCL ENSG00000115392|ENST00000233741|FANCL ENSG00000115392|ENST00000233741|FANCL MSMS UPN48_class_I_Rep_1 5 618.7891845703125 2 618.789524 1235.56449 NaN NaN NaN NaN NaN NaN NaN 63.581 1 67.039 66.539 67.539 3.4578 0 0 0 0.38417 1 14324 14324 1.3295 0 1 4685 2127 2968 2972 5936 5936 -0.04386535608341546 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.760009765625 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 115.76 1 119.26 118.76 119.76 3.4965 0 0 0 0.39428 1 28237 28237 2.0598 0 1 4686 14022 2969 2973 5937 5937 -0.02784655300911254 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2737426757812 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 17.16 1 20.686 20.186 21.186 3.5261 0 0 0 0.39428 1 951 951 2.0598 0 1 4687 14022 2969 2973 5938 5938 -0.02784655300911254 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2737426757812 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 18.132 1 21.664 21.164 22.164 3.5313 0 0 0 0.39428 1 1169 1169 2.0598 0 1 4688 14022 2969 2973 5939 5939 -0.02784655300911254 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2735595703125 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 112.14 1 115.81 115.31 116.31 3.6666 0 0 0 0.39428 1 26701 26701 2.0598 0 1 4689 14022 2969 2973 5940 5940 -0.02784655300911254 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2731323242188 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 27.042 1 30.797 30.297 31.297 3.7555 0 0 0 0.39428 1 3501 3501 2.0598 0 1 4690 14022 2969 2973 5941 5941 -0.02784655300911254 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2742309570312 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 117.95 1 121.56 121.06 122.06 3.6124 0 0 0 0.39428 1 28052 28052 2.0598 0 1 4691 14022 2969 2973 5942 5942 -0.02784655300911254 ECFLPFCRL 9 Unmodified _ECFLPFCRL_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense;L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|95|2|anti-sense;L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|179|2|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2752685546875 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 118.15 1 121.74 121.24 122.24 3.5847 0 0 0 0.39428 1 28098 28098 2.0598 0 1 4692 14022 2969 2973 5943 5943 -0.02784655300911254 ECFYFPLVPE 10 Unmodified _ECFYFPLVPE_ 0 0 0 L1MDa_dup6517|chr20:3502260-3504394:+|2.670334275946741|0.0512666168730633|5.7|151.0|98|2|anti-sense L1MDa_dup6517|chr20:3502260-3504394:+|2.670334275946741|0.0512666168730633|5.7|151.0|98|2|anti-sense L1MDa_dup6517|chr20:3502260-3504394:+|2.670334275946741|0.0512666168730633|5.7|151.0|98|2|anti-sense MSMS UPN46_class_I_Rep_3 1 622.287353515625 2 622.288825 1242.5631 NaN NaN NaN NaN NaN NaN NaN 13.607 1 13.607 13.107 14.107 0 0 0 0 0.53105 1 424 424 1.4819 0.15237 1 4693 12150 2970 2974 5944 5944 -0.04848169697038429 ECFYTWWDC 9 Unmodified _ECFYTWWDC_ 0 0 0 L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|161|3|sense L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|161|3|sense L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|161|3|sense MSMS UPN47_class_I_Rep_3 4 626.7233276367188 2 626.725535 1251.43652 NaN NaN NaN NaN NaN NaN NaN 22.035 1 25.384 24.884 25.884 3.3496 0 0 0 0.4007 1 2569 2569 0.52476 0 1 4694 14465 2971 2975 5945 5945 -0.17914419193857611 ECGDCDPCCD 10 Unmodified _ECGDCDPCCD_ 0 0 0 REV__ENSG00000135253|ENST00000610776|KCP REV__ENSG00000135253|ENST00000610776|KCP MSMS UPN46_class_I_Rep_3 1 530.3982543945312 2 530.129753 1058.24495 NaN NaN NaN NaN NaN NaN NaN 72.51 1 72.51 72.01 73.01 0 0 0 0 0.53105 1 16764 16764 0 0 1 + 4695 19128 2972 2976 5946 5946 -0.2818403127880629 ECLYTVDGSVN 11 Unmodified _ECLYTVDGSVN_ 0 0 0 L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|11|1|sense L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|11|1|sense L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 600.263427734375 2 600.266078 1198.5176 0.44313 0.000266 -3.0268 -0.0018169 -2.5837 -0.0015509 600.2639302647085 67.3 0.17245 70.491 70.416 70.589 3.1914 16 12 2 0 0 0 0.66059 1 16286 16286 2.2828 0 1 35191 4696 14154 2973 2977 5947 5947 -0.0737143995011138 ECMYYWCKPLS 11 Unmodified _ECMYYWCKPLS_ 0 0 0 REV__AluSz_dup36667|chr7:5405287-5405596:+|2.0798772612990284|0.0074206698307024|8.13|151.0|19|2|anti-sense REV__AluSz_dup36667|chr7:5405287-5405596:+|2.0798772612990284|0.0074206698307024|8.13|151.0|19|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 474.2005310058594 3 474.867877 1421.5818 0.16039 7.6163E-05 2.0929 0.00099387 2.2533 0.00107 474.8689636654666 60.18 0.16813 63.453 63.411 63.579 3.2731 11 9 2 0 0 0 22.551 1 14066 14066 1.2148 0.10508 1 53317 + 4697 17201 2974 2978 5948 5948 -0.11212699389170666 ECRSSPCANG 10 Unmodified _ECRSSPCANG_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;NOTCH4|p.L1504Tfs*18|1|0.07|ENSG00000204301|chr6:32198952-32198953|-/G|frameshift_variant ENSG00000204301|ENST00000375023|NOTCH4 ENSG00000204301|ENST00000375023|NOTCH4 MSMS UPN48_class_I_Rep_3 7 512.2044677734375 2 512.202758 1022.39096 NaN NaN NaN NaN NaN NaN NaN 99.644 1 103.51 103.01 104.01 3.8701 0 0 0 0.53105 1 23597 23597 5.2969 0.54088 1 4698 5513 2975 2979 5949 5949 -0.11933644656244269 ECRYGWYK 8 Unmodified _ECRYGWYK_ 0 0 0 REV__AluSz6_dup13662|chr5:76852429-76852739:+|1.5463497062128853|0.0049708901470857|8.28|149.0|22|3|anti-sense REV__AluSz6_dup13662|chr5:76852429-76852739:+|1.5463497062128853|0.0049708901470857|8.28|149.0|22|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7499389648438 2 552.750201 1103.48585 NaN NaN NaN NaN NaN NaN NaN 27.976 1 31.474 30.974 31.974 3.4986 0 0 0 0.40625 1 4277 4277 2.3027 0 1 + 4699 17223 2976 2980 5950 5950 -0.06175343122754384 ECTALVYAL 9 Unmodified _ECTALVYAL_ 0 0 0 nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS UPN48_class_I_Rep_1 5 491.74932861328125 2 491.749336 981.484119 0.19996 9.833E-05 -0.10049 -4.9417E-05 0.099467 4.8913E-05 491.74927027122874 72.823 0.13477 76.296 76.2 76.335 3.4732 10 7 2 0 0 0 0.35081 1 17126 17126 10.824 0 1 66370 4700 16618 2977 2981 5951 5951 -0.007363969313814778 ECTALVYAL 9 Unmodified _ECTALVYAL_ 0 0 0 nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 491.749336 981.484119 0.19996 9.833E-05 -0.10049 -4.9417E-05 0.099467 4.8913E-05 491.74927027122874 72.823 0.13477 76.296 76.2 76.335 3.4732 0.013533 -4.0253E-05 NaN 10.824 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 66370 4701 16618 2977 2981 -0.007363969313814778 ECTALVYAL 9 Unmodified _ECTALVYAL_ 0 0 0 nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 nc|ENSG00000008710|P98161-2|PKD1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 491.749336 981.484119 0.25949 0.0001276 0.28505 0.00014017 0.54454 0.00026777 491.7491702269559 72.705 0.060417 76.269 76.243 76.304 3.5645 -0.013533 0.00033892 NaN 10.824 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 32972 4702 16618 2977 2981 -0.007363969313814778 ECTECGRVFS 10 Unmodified _ECTECGRVFS_ 0 0 0 nc|ENSG00000186272|P17021-3|ZNF17;ENST00000602050.1_1_19:57930944-57932846:+|nuORF;nc|ENSG00000186272|P17021|ZNF17;ENSG00000186272|ENST00000307658|ZNF17 nc|ENSG00000186272|P17021-3|ZNF17 nc|ENSG00000186272|P17021-3|ZNF17 MSMS UPN47_class_I_Rep_3 4 565.7333984375 2 565.733891 1129.45323 NaN NaN NaN NaN NaN NaN NaN 37.766 1 41.007 40.507 41.507 3.2414 0 0 0 0.53105 1 7278 7278 3.5965 0 1 4703 5151 2978 2982 5952 5952 -0.10631918307899468 ECVCYYQPC 9 Unmodified _ECVCYYQPC_ 0 0 0 REV__ENSG00000165899|ENST00000547103|OTOGL REV__ENSG00000165899|ENST00000547103|OTOGL MULTI-MSMS UPN46_class_I_Rep_3 1 554.200927734375 2 554.200838 1106.38712 0.3899 0.00021608 0.64638 0.00035822 1.0363 0.00057431 554.2010414864167 44.127 0.49383 44.127 43.959 44.453 0 78 45 2 0 0 0 0.48846 1 8843 8843 1.8442 1.0506 1 274720 + 4704 20142 2979 2983 5953 5953 -0.16181450474323356 ECVFCCCRMS 10 Unmodified _ECVFCCCRMS_ 0 0 0 L1MEf_dup4648|chr6:156202310-156203766:+|2.1989217437702746|0.009445118278471|7.86|149.0|99|2|anti-sense L1MEf_dup4648|chr6:156202310-156203766:+|2.1989217437702746|0.009445118278471|7.86|149.0|99|2|anti-sense L1MEf_dup4648|chr6:156202310-156203766:+|2.1989217437702746|0.009445118278471|7.86|149.0|99|2|anti-sense MSMS UPN47_class_I_Rep_1 2 590.7962646484375 2 590.70745 1179.40035 NaN NaN NaN NaN NaN NaN NaN 32.142 1 35.855 35.355 36.355 3.7131 0 0 0 0.53105 1 5492 5492 1.4819 0.68827 1 4705 13276 2980 2984 5954 5954 -0.18217658958224092 ECYCPSPIL 9 Unmodified _ECYCPSPIL_ 0 0 0 REV__L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|50|2|anti-sense REV__L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 512.7296752929688 2 512.727546 1023.44054 NaN NaN NaN NaN NaN NaN NaN 36.185 1 39.872 39.372 40.372 3.6877 0 0 0 0.39428 1 6056 6056 2.0598 0.21551 1 + 4706 29920 2981 2985 5955 5955 -0.07024329700129783 ECYRVMDNTF 10 Unmodified _ECYRVMDNTF_ 0 0 0 Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|277|2|anti-sense Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|277|2|anti-sense Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|277|2|anti-sense MSMS UPN48_class_I_Rep_3 7 639.2655029296875 2 639.268098 1276.52164 NaN NaN NaN NaN NaN NaN NaN 44.998 1 48.636 48.136 49.136 3.6372 0 0 0 0.53105 1 8566 8566 2.4985 0.41248 1 4707 7967 2982 2986 5956 5956 -0.10555673728049442 EDADCYDD 8 Unmodified _EDADCYDD_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MSMS UPN48_class_I_Rep_2 6 473.15533447265625 2 473.142555 944.270557 NaN NaN NaN NaN NaN NaN NaN 100.49 1 104.23 103.73 104.73 3.7417 0 0 0 0.40604 1 23864 23864 2.5775 1.8871 1 4708 1817 2983 2987 5957 5957 -0.2038077416887063 EDAKFLSGVY 10 Unmodified _EDAKFLSGVY_ 0 0 0 ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|109|3|anti-sense ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|109|3|anti-sense ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|109|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.7828369140625 2 564.782222 1127.54989 0.36982 0.00020887 -0.41176 -0.00023255 -0.041935 -2.3684E-05 564.7818562398027 63.946 0.47028 67.302 67.098 67.569 3.3557 63 37 2 0 0 0 0.3776 2 15208 15184;15208 21.537 2.28 1 150320 4709 7719 2984 2988 5958;5959 5959 -0.008782844847701199 EDCQYQERSC 10 Unmodified _EDCQYQERSC_ 0 0 0 L1MEc_dup7580|chr6:156977107-156978427:-|2.657135846699484|0.0593839765136451|5.48|151.0|73|3|anti-sense L1MEc_dup7580|chr6:156977107-156978427:-|2.657135846699484|0.0593839765136451|5.48|151.0|73|3|anti-sense L1MEc_dup7580|chr6:156977107-156978427:-|2.657135846699484|0.0593839765136451|5.48|151.0|73|3|anti-sense MSMS UPN47_class_I_Rep_3 4 630.7355346679688 2 630.734619 1259.45469 NaN NaN NaN NaN NaN NaN NaN 26.375 1 29.723 29.223 30.223 3.3478 0 0 0 0.53105 1 3848 3848 1.4819 0 1 4710 13138 2985 2989 5960 5960 -0.1646632900979057 EDCYGFHPIK 10 Unmodified _EDCYGFHPIK_ 0 0 0 REV__ENSG00000137992|ENST00000370132|DBT REV__ENSG00000137992|ENST00000370132|DBT MSMS UPN48_class_I_Rep_1 5 604.7738037109375 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 20.393 1 23.938 23.438 24.438 3.5454 0 0 0 0.53105 1 1710 1710 0.40072 0.40072 1 + 4711 19256 2986 2990 5961 5961 -0.062271086424289024 EDDCWTECWLW 11 Unmodified _EDDCWTECWLW_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MSMS UPN48_class_I_Rep_2 6 495.82342529296875 3 495.853172 1484.53769 NaN NaN NaN NaN NaN NaN NaN 22.626 1 26.27 25.77 26.77 3.6432 0 0 0 0.38417 1 2342 2342 0.094841 0.094841 1 + 4712 18198 2987 2991 5962 5962 -0.18520012281805975 EDDCWTECWLW 11 Unmodified _EDDCWTECWLW_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MSMS UPN48_class_I_Rep_3 7 495.8559265136719 3 495.853172 1484.53769 NaN NaN NaN NaN NaN NaN NaN 23.676 1 27.445 26.945 27.945 3.769 0 0 0 0.38417 1 2633 2633 0.094841 0.011491 1 + 4713 18198 2987 2991 5963 5963 -0.18520012281805975 EDDDDDDDDDD 11 Unmodified _EDDDDDDDDDD_ 0 0 0 ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENSG00000273841|ENST00000217893|TAF9;ENSG00000130528|ENST00000252825|HRC ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;REV__ENSG00000106819|ENST00000375544|ASPN;REV__ENSG00000156802|ENST00000287394|ATAD2;REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF;REV__nc|ENSG00000197969|Q96RL7-2|VPS13A ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS UPN46_class_I_Rep_3 1 433.4487609863281 3 433.448139 1297.32259 NaN NaN NaN NaN NaN NaN NaN 40.328 1 40.328 39.828 40.828 0 0 0 0 0.38417 1 7819 7819 0 0 1 4714 7210;6766;19806;32094;18343;22320 2988 2992 5964 5964 -0.3141802880272735 EDDDDDSDEPG 11 Unmodified _EDDDDDSDEPG_ 0 0 0 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 MSMS UPN46_class_I_Rep_3 1 604.688232421875 2 604.689109 1207.36367 NaN NaN NaN NaN NaN NaN NaN 51.877 1 51.877 51.377 52.377 0 0 0 0 0.38417 1 11055 11055 0.30703 0 1 4715 5241 2989 2993 5965 5965 -0.23172222972607415 EDDEDHWS 8 Unmodified _EDDEDHWS_ 0 0 0 REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO MSMS UPN48_class_I_Rep_1 5 516.249755859375 2 516.680693 1031.34683 NaN NaN NaN NaN NaN NaN NaN 23.832 1 27.397 26.897 27.897 3.5655 0 0 0 0.40746 1 2542 2542 0.69038 0 1 + 4716 20891 2990 2994 5966 5966 -0.16758634277221063 EDDHYMFHSC 10 Unmodified _EDDHYMFHSC_ 0 0 0 Looper_dup483|chr17:46683029-46683965:-|1.142323167314287|0.0234210142759547|5.61|149.0|43|1|anti-sense;Looper_dup480|chr17:46465337-46466273:-|1.1201511897538474|0.0228243014060243|5.62|149.0|43|1|anti-sense Looper_dup483|chr17:46683029-46683965:-|1.142323167314287|0.0234210142759547|5.61|149.0|43|1|anti-sense Looper_dup483|chr17:46683029-46683965:-|1.142323167314287|0.0234210142759547|5.61|149.0|43|1|anti-sense MSMS UPN48_class_I_Rep_1 5 642.22607421875 2 642.22643 1282.43831 NaN NaN NaN NaN NaN NaN NaN 118.96 1 122.58 122.08 123.08 3.6189 0 0 0 0.53105 1 29028 29028 0.40072 0 1 4717 15490 2991 2995 5967 5967 -0.19161410175888705 EDDIIFPF 8 Unmodified _EDDIIFPF_ 0 0 0 nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-2|RUBCN nc|ENSG00000145016|Q92622-2|RUBCN MSMS UPN46_class_I_Rep_3 1 498.3399658203125 2 498.239658 994.464763 NaN NaN NaN NaN NaN NaN NaN 32.966 1 32.966 32.466 33.466 0 0 0 0 0.36148 1 5708 5708 19.439 0 1 4718 3381 2992 2996 5968 5968 -0.03269029950604363 EDDSAFKT 8 Unmodified _EDDSAFKT_ 0 0 0 REV__ENSG00000138385|ENST00000260956|SSB REV__ENSG00000138385|ENST00000260956|SSB MSMS UPN47_class_I_Rep_3 4 456.70037841796875 2 456.700897 911.387241 NaN NaN NaN NaN NaN NaN NaN 19.419 1 22.771 22.271 23.271 3.3514 0 0 0 0.40753 1 1811 1811 0.6015 0.6015 1 + 4719 19272 2993 2997 5969 5969 -0.07199667886800398 EDDSIMLY 8 Unmodified _EDDSIMLY_ 0 0 0 REV__L1PA16_dup4848|chr5:131759020-131760254:+|1.2630065630290117|0.0293401779713411|5.43|151.0|65|2|anti-sense REV__L1PA16_dup4848|chr5:131759020-131760254:+|1.2630065630290117|0.0293401779713411|5.43|151.0|65|2|anti-sense MSMS UPN46_class_I_Rep_3 1 493.21435546875 2 493.212783 984.411013 NaN NaN NaN NaN NaN NaN NaN 16.003 1 16.003 15.503 16.503 0 0 0 0 0.39624 1 1015 1015 9.3474 0.75416 1 + 4720 29325 2994 2998 5970 5970 -0.08181570444639874 EDEDDDDDEE 10 Unmodified _EDEDDDDDEE_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MSMS UPN48_class_I_Rep_1 5 613.1828002929688 2 613.178574 1224.3426 NaN NaN NaN NaN NaN NaN NaN 113.89 1 117.52 117.02 118.02 3.6314 0 0 0 0.53105 1 27677 27677 0.40072 0 1 4721 2517 2995 2999 5971 5971 -0.26060233072098526 EDEDDDDDEE 10 Unmodified _EDEDDDDDEE_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MSMS UPN48_class_I_Rep_1 5 613.178955078125 2 613.178574 1224.3426 NaN NaN NaN NaN NaN NaN NaN 114.9 1 118.53 118.03 119.03 3.6301 0 0 0 0.53105 1 27940 27940 0.40072 0 1 4722 2517 2995 2999 5972 5972 -0.26060233072098526 EDEDDDDDEE 10 Unmodified _EDEDDDDDEE_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MSMS UPN48_class_I_Rep_2 6 613.1806640625 2 613.178574 1224.3426 NaN NaN NaN NaN NaN NaN NaN 22.861 1 26.505 26.005 27.005 3.6432 0 0 0 0.53105 1 2400 2400 1.4819 0 1 4723 2517 2995 2999 5973 5973 -0.26060233072098526 EDEDDDDDEE 10 Unmodified _EDEDDDDDEE_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MSMS UPN48_class_I_Rep_2 6 613.181396484375 2 613.178574 1224.3426 NaN NaN NaN NaN NaN NaN NaN 111.48 1 115.15 114.65 115.65 3.6666 0 0 0 0.53105 1 26518 26518 0.40072 0 1 4724 2517 2995 2999 5974 5974 -0.26060233072098526 EDEDDDDDEE 10 Unmodified _EDEDDDDDEE_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MSMS UPN48_class_I_Rep_3 7 613.1798706054688 2 613.178574 1224.3426 NaN NaN NaN NaN NaN NaN NaN 18.401 1 21.988 21.488 22.488 3.5874 0 0 0 0.53105 1 1210 1210 0.40072 0 1 4725 2517 2995 2999 5975 5975 -0.26060233072098526 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN46_class_I_Rep_3 1 405.8023681640625 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 72.607 1 72.607 72.107 73.107 0 0 0 0 0.53105 1 16789 16789 0 0 1 4726 6750 2996 3000 5976 5976 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_1 2 405.7978210449219 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 27.635 1 31.401 30.901 31.901 3.7662 0 0 0 0.53105 1 4141 4141 0 0 1 4727 6750 2996 3000 5977 5977 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_1 2 405.7984924316406 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 53.164 1 56.691 56.191 57.191 3.5278 0 0 0 0.53105 1 11888 11888 0 0 1 4728 6750 2996 3000 5978 5978 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_2 3 405.79791259765625 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 19.358 1 22.754 22.254 23.254 3.3963 0 0 0 0.53105 1 1809 1809 0 0 1 4729 6750 2996 3000 5979 5979 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_2 3 405.7977600097656 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 26.884 1 30.382 29.882 30.882 3.4986 0 0 0 0.53105 1 3954 3954 0 0 1 4730 6750 2996 3000 5980 5980 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_2 3 405.7980041503906 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 32.674 1 36.129 35.629 36.629 3.4547 0 0 0 0.53105 1 5691 5691 0 0 1 4731 6750 2996 3000 5981 5981 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.79718017578125 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 21.567 1 24.917 24.417 25.417 3.3496 0 0 0 0.53105 1 2435 2435 0 0 1 4732 6750 2996 3000 5982 5982 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.7976989746094 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 27.743 1 31.085 30.585 31.585 3.3422 0 0 0 0.53105 1 4256 4256 0 0 1 4733 6750 2996 3000 5983 5983 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.79779052734375 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 27.81 1 31.152 30.652 31.652 3.3422 0 0 0 0.53105 1 4276 4276 0 0 1 4734 6750 2996 3000 5984 5984 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.7979431152344 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 44.651 1 47.895 47.395 48.395 3.2441 0 0 0 0.53105 1 9384 9384 0 0 1 4735 6750 2996 3000 5985 5985 -0.22511034967192245 EDEDDYDGEE 10 Unmodified _EDEDDYDGEE_ 0 0 0 ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF ENST00000435954.2_1_6:54350144-54350642:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.7981262207031 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 50.31 1 53.536 53.036 54.036 3.2262 0 0 0 0.53105 1 11103 11103 0 0 1 4736 6750 2996 3000 5986 5986 -0.22511034967192245 EDEDGDCY 8 Unmodified _EDEDGDCY_ 0 0 0 REV__ENSG00000115267|ENST00000649979|IFIH1 REV__ENSG00000115267|ENST00000649979|IFIH1 MSMS UPN46_class_I_Rep_3 1 473.14471435546875 2 473.142555 944.270557 NaN NaN NaN NaN NaN NaN NaN 61.015 1 61.015 60.515 61.515 0 0 0 0 0.40738 1 13560 13560 0.79363 0 1 + 4737 18550 2997 3001 5987 5987 -0.20380774168859261 EDEDLKAR 8 Unmodified _EDEDLKAR_ 0 0 0 ENST00000474131.5_1_10:75577276-75601951:-|nuORF ENST00000474131.5_1_10:75577276-75601951:-|nuORF ENST00000474131.5_1_10:75577276-75601951:-|nuORF MSMS UPN48_class_I_Rep_3 7 488.6407775878906 2 488.240721 974.466889 NaN NaN NaN NaN NaN NaN NaN 67.548 1 71.056 70.556 71.556 3.5077 0 0 0 0.40604 1 15427 15427 2.5775 1.7838 1 4738 6945 2998 3002 5988 5988 -0.021366012127941758 EDEEDAHAGII 11 Unmodified _EDEEDAHAGII_ 0 0 0 ENST00000524877.5_1_11:61729625-61731591:+|nuORF;ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-4|BEST1;ENSG00000167995|ENST00000378043|BEST1;nc|ENSG00000167995|O76090-3|BEST1 ENST00000524877.5_1_11:61729625-61731591:+|nuORF ENST00000524877.5_1_11:61729625-61731591:+|nuORF MSMS UPN48_class_I_Rep_2 6 599.7623901367188 2 599.764757 1197.51496 NaN NaN NaN NaN NaN NaN NaN 22.139 1 25.785 25.285 26.285 3.6459 0 0 0 0.38417 1 2213 2213 1.3295 0.63916 1 4739 4342 2999 3003 5989 5989 -0.0758957208342963 EDEFARLT 8 Unmodified _EDEFARLT_ 0 0 0 REV__ENST00000414718.1_1_20:12361512-12361782:+|nuORF REV__ENST00000414718.1_1_20:12361512-12361782:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 491.23956298828125 2 490.737814 979.461075 0.25603 0.00012565 -0.22393 -0.00010989 0.032108 1.5756E-05 490.7375924319019 47.126 0.33429 47.126 46.99 47.324 0 45 33 2 0 0 0 0.82752 1 9737 9737 29.841 0 1 116780 + 4740 20366 3000 3004 5990 5990 -0.02947699724472841 EDEGMYKC 8 Unmodified _EDEGMYKC_ 0 0 0 ENST00000466059.5_1_3:112989541-112990141:+|nuORF;ENST00000471963.6_1_3:112968649-112990141:+|nuORF;nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC ENST00000466059.5_1_3:112989541-112990141:+|nuORF ENST00000466059.5_1_3:112989541-112990141:+|nuORF MSMS UPN46_class_I_Rep_3 1 487.68475341796875 2 487.683336 973.352118 NaN NaN NaN NaN NaN NaN NaN 33.133 1 33.133 32.633 33.633 0 0 0 0 0.40404 1 5759 5759 5.2307 0 1 4741 3379 3001 3005 5991 5991 -0.13562370010617997 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN46_class_I_Rep_3 1 600.2298583984375 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 14.844 1 14.844 14.344 15.344 0 0 0 0 0.53105 1 734 734 0.40072 0 1 + 4742 18130 3002 3006 5992 5992 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN46_class_I_Rep_3 1 600.2293701171875 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 15.51 1 15.51 15.01 16.01 0 0 0 0 0.53105 1 899 899 0.40072 0 1 + 4743 18130 3002 3006 5993 5993 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN46_class_I_Rep_3 1 600.229736328125 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 17.595 1 17.595 17.095 18.095 0 0 0 0 0.53105 1 1408 1408 0.40072 0 1 + 4744 18130 3002 3006 5994 5994 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN46_class_I_Rep_3 1 600.2299194335938 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 24.221 1 24.221 23.721 24.721 0 0 0 0 0.53105 1 3152 3152 0.40072 0 1 + 4745 18130 3002 3006 5995 5995 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN47_class_I_Rep_1 2 600.2298583984375 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 15.92 1 19.417 18.917 19.917 3.4968 0 0 0 0.53105 1 932 932 0.40072 0 1 + 4746 18130 3002 3006 5996 5996 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN47_class_I_Rep_2 3 600.2297973632812 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 119.23 1 122.71 122.21 123.21 3.4793 0 0 0 0.53105 1 29198 29198 0.40072 0 1 + 4747 18130 3002 3006 5997 5997 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN48_class_I_Rep_1 5 600.2305297851562 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 22.841 1 26.401 25.901 26.901 3.5605 0 0 0 0.53105 1 2288 2288 0.40072 0 1 + 4748 18130 3002 3006 5998 5998 -0.14308266961188565 EDEMSMKESN 10 Unmodified _EDEMSMKESN_ 0 0 0 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14 MSMS UPN48_class_I_Rep_3 7 600.2301635742188 2 600.231378 1198.4482 NaN NaN NaN NaN NaN NaN NaN 16.188 1 19.737 19.237 20.237 3.5486 0 0 0 0.53105 1 745 745 0.40072 0 1 + 4749 18130 3002 3006 5999 5999 -0.14308266961188565 EDEVMFNQQL 10 Unmodified _EDEVMFNQQL_ 0 0 0 REV__nc|ENSG00000106462|Q15910-5|EZH2 REV__nc|ENSG00000106462|Q15910-5|EZH2 MSMS UPN48_class_I_Rep_3 7 626.779541015625 2 626.779353 1251.54415 NaN NaN NaN NaN NaN NaN NaN 58.876 1 62.399 61.899 62.899 3.5231 0 0 0 0.53105 1 12799 12799 1.4819 0 1 + 4750 18327 3003 3007 6000 6000 -0.07155751058780879 EDEWFIVY 8 Unmodified _EDEWFIVY_ 0 0 0 ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|1|intron;ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|6|intron;ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|5|intron;ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|4|intron;ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|7|intron;ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|2|intron;nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|3|intron;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|1|intron ENSG00000122882.11,ECD,chr10,-,I3.1,73160552,73163732|48|7.86|1|intron MSMS UPN47_class_I_Rep_1 2 550.74853515625 2 550.75039 1099.48623 NaN NaN NaN NaN NaN NaN NaN 63.143 1 66.502 66.002 67.002 3.3595 0 0 0 0.40738 1 14922 14922 0.79363 0 1 4751 2399 3004 3008 6001 6001 -0.05953644921896739 EDFITPTKF 9 Unmodified _EDFITPTKF_ 0 0 0 HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|147|3|sense HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|147|3|sense HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|147|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 549.279541015625 2 549.279315 1096.54408 0.39014 0.0002143 -0.079887 -4.388E-05 0.31025 0.00017042 549.2792473350655 83.318 0.29303 83.318 83.23 83.523 0 41 29 3 0 0 0 0.43982 1 19815 19815 5.7319 0 1 127060 4752 8247 3005 3009 6002 6002 -0.00033382996502950846 EDFKGFLEN 9 Unmodified _EDFKGFLEN_ 0 0 0 REV__ENSG00000164742|ENST00000297323|ADCY1 REV__ENSG00000164742|ENST00000297323|ADCY1 MULTI-SECPEP UPN46_class_I_Rep_3 1 549.279541015625 2 549.758746 1097.50294 0.39172 0.00021535 0.42813 0.00023537 0.81985 0.00045072 549.7593978605129 83.478 0.24204 83.478 83.326 83.568 0 41 26 2 0 0 0 0.12462 1 19815 19815 1.8442 0 1 106970 + 4753 20080 3006 3010 6003 6003 -0.04191144035939942 EDFNIKVI 8 Unmodified _EDFNIKVI_ 0 0 0 nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL nc|ENSG00000120334|Q8N0S6-3|CENPL nc|ENSG00000120334|Q8N0S6-3|CENPL MULTI-MSMS UPN46_class_I_Rep_3 1 489.2689208984375 2 489.26875 976.522947 0.24082 0.00011783 0.11607 5.6788E-05 0.35689 0.00017462 489.26873448874176 68.766 0.3853 68.766 68.535 68.92 0 50 36 2 0 0 0 0.82752 1 15703 15703 29.082 0 1 202270 4754 2322 3007 3011 6004 6004 0.03374651694673503 EDFSFHYA 8 Unmodified _EDFSFHYA_ 0 0 0 ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2 ENST00000555522.1_1_14:75469672-75471687:+|nuORF ENST00000555522.1_1_14:75469672-75471687:+|nuORF MSMS UPN46_class_I_Rep_3 1 508.21142578125 2 508.211432 1014.40831 NaN NaN NaN NaN NaN NaN NaN 40.593 1 40.593 40.093 41.093 0 0 0 0 0.40364 1 7888 7888 5.7604 0 1 4755 2292 3008 3012 6005 6005 -0.09831657787287895 EDFVRIFDEV 10 Unmodified _EDFVRIFDEV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MSMS UPN48_class_I_Rep_1 5 634.8123168945312 2 634.81151 1267.60847 NaN NaN NaN NaN NaN NaN NaN 37.898 1 41.403 40.903 41.903 3.5052 0 0 0 0.53105 1 6499 6499 1.4819 0 1 4756 5840 3009 3013 6006 6006 -0.014632279103580004 EDGLEAQL 8 Unmodified _EDGLEAQL_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS UPN47_class_I_Rep_2 3 437.7110290527344 2 437.711265 873.407977 -0.72761 -0.00031848 0.46758 0.00020466 -0.26004 -0.00011382 437.7113974467825 36.634 0.64228 40.032 39.761 40.403 3.3988 71 48 2 0 0 0 0.82752 1 6869 6869 12.532 0 1 119200 4757 1768 3010 3014 6007 6007 -0.03379077507133843 EDGRLVIEF 9 Unmodified _EDGRLVIEF_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-MSMS UPN46_class_I_Rep_3 1 539.2825317382812 2 539.282389 1076.55022 0.32033 0.00017275 0.025381 1.3687E-05 0.34571 0.00018644 539.2823616055678 72.397 0.74073 72.397 72.128 72.869 0 202 78 3 0 0 0 0.013215 6 16746 16677;16712;16746;16779;16814;16848 67.838 0 1 782970 4758 3110 3011 3015 6008;6009;6010;6011;6012;6013 6010 0.01501135235048423 EDGRLVIEF 9 Unmodified _EDGRLVIEF_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-MSMS UPN46_class_I_Rep_3 1 539.2828979492188 2 539.282389 1076.55022 0.32138 0.00017332 0.13758 7.4194E-05 0.45896 0.00024751 539.2823631864089 72.933 0.21974 72.933 72.869 73.089 0 30 22 2 0 0 0 0.15547 3 16884 16884;16901;16910 24.991 0 1 110050 4759 3110 3011 3015 6014;6015;6016 6014 0.01501135235048423 EDGSFLLNYL 10 Unmodified _EDGSFLLNYL_ 0 0 0 L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|115|3|anti-sense L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|115|3|anti-sense L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|115|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 585.7700805664062 2 585.787504 1169.56045 0.48575 0.00028455 -0.54354 -0.0003184 -0.057782 -3.3848E-05 585.7872674087901 70.705 0.20058 70.705 70.535 70.735 0 28 20 2 0 0 0 0.43106 1 16259 16259 17.113 4.0704 1 101560 4760 10756 3012 3016 6017 6017 -0.01754301830374061 EDHEDEFNEED 11 Unmodified _EDHEDEFNEED_ 0 0 0 ENST00000489621.1_1_3:101431466-101431589:+|nuORF;ENSG00000115539|ENST00000264254|PDCL3 ENST00000489621.1_1_3:101431466-101431589:+|nuORF ENST00000489621.1_1_3:101431466-101431589:+|nuORF MSMS UPN48_class_I_Rep_2 6 469.832763671875 3 469.832147 1406.47461 NaN NaN NaN NaN NaN NaN NaN 19.836 1 23.485 22.985 23.985 3.6497 0 0 0 0.38417 1 1589 1589 0 0 1 4761 2130 3013 3017 6018 6018 -0.21236583264476394 EDHKIAAY 8 Unmodified _EDHKIAAY_ 0 0 0 REV__L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|66|1|sense REV__L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|66|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 473.73504638671875 2 473.735074 945.455596 0.13092 6.2021E-05 -0.32625 -0.00015456 -0.19533 -9.2537E-05 473.7348504465606 37.309 0.10441 40.815 40.773 40.877 3.507 9 8 2 0 0 0 0.82752 1 6329 6329 5.2307 0 1 42434 + 4762 29599 3014 3018 6019 6019 -0.01931378516303539 EDHKIAAY 8 Unmodified _EDHKIAAY_ 0 0 0 REV__L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|66|1|sense REV__L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|66|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 473.735074 945.455596 0.18421 8.7266E-05 -0.26835 -0.00012713 -0.084138 -3.9859E-05 473.7347559785933 37.058 0.085732 40.76 40.698 40.784 3.7021 -0.027776 1.3274E-05 NaN 5.2307 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 48062 + 4763 29599 3014 3018 -0.01931378516303539 EDHVVDPVI 9 Unmodified _EDHVVDPVI_ 0 0 0 L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|8|1|sense L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|8|1|sense L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 511.7622985839844 2 511.761289 1021.50803 0.24975 0.00012781 0.051341 2.6274E-05 0.30109 0.00015409 511.7612060943454 53.187 0.55559 53.187 52.893 53.449 0 93 58 2 0 0 0 0.26948 1 11390 11390 15.847 2.8047 1 227350 4764 12796 3015 3019 6020 6020 -0.001868401733418068 EDIFIHTFHD 10 Unmodified _EDIFIHTFHD_ 0 0 0 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 MULTI-MSMS UPN46_class_I_Rep_3 1 637.2966918945312 2 637.296027 1272.5775 0.69763 0.00044459 -0.22408 -0.0001428 0.47355 0.00030179 637.2957886883787 72.57 0.52851 72.57 72.341 72.869 0 115 56 3 0 0 0 0.52083 1 16815 16815 9.3831 9.3831 1 219450 + 4765 19766 3016 3020 6021 6021 -0.047883812246027446 EDILADAPE 9 Unmodified _EDILADAPE_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MSMS UPN46_class_I_Rep_3 1 486.7167053222656 2 486.729655 971.444756 NaN NaN NaN NaN NaN NaN NaN 26.242 1 26.242 25.742 26.742 0 0 0 0 0.36505 1 3723 3723 7.2892 0 1 4766 5060 3017 3021 6022 6022 -0.04210825681229835 EDIRVTLL 8 Unmodified _EDIRVTLL_ 0 0 0 ENST00000537665.2_1_8:27995293-27995368:+|nuORF ENST00000537665.2_1_8:27995293-27995368:+|nuORF ENST00000537665.2_1_8:27995293-27995368:+|nuORF MSMS UPN46_class_I_Rep_3 1 479.78228759765625 2 479.782025 957.549496 NaN NaN NaN NaN NaN NaN NaN 69.62 1 69.62 69.12 70.12 0 0 0 0 0.35253 1 15965 15965 21.537 3.3906 1 4767 7338 3018 3022 6023 6023 0.06902340586009359 EDKEMRKKYG 10 Unmodified _EDKEMRKKYG_ 0 0 0 ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67 ENSG00000179133|ENST00000636213|C10orf67 ENSG00000179133|ENST00000636213|C10orf67 MSMS UPN47_class_I_Rep_3 4 642.32421875 2 642.324262 1282.63397 NaN NaN NaN NaN NaN NaN NaN 94.848 1 98.255 97.755 98.755 3.4068 0 0 0 0.53105 1 23597 23597 0.40072 0 1 4768 4850 3019 3023 6024 6024 0.0039592334044300515 EDKKIAEY 8 Unmodified _EDKKIAEY_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|42|1|sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|42|1|sense MSMS UPN46_class_I_Rep_3 1 498.34027099609375 2 498.25584 994.497126 NaN NaN NaN NaN NaN NaN NaN 36.802 1 36.802 36.302 37.302 0 0 0 0 0.38112 1 6861 6861 14.838 3.198 1 + 4769 30117 3020 3024 6025 6025 -0.0003424254762194323 EDKRVVEF 8 Unmodified _EDKRVVEF_ 0 0 0 REV__ENSG00000198919|ENST00000361582|DZIP3 REV__ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS UPN47_class_I_Rep_3 4 511.2701416015625 2 511.269281 1020.52401 0.31096 0.00015898 3.9173 0.0020028 4.2282 0.0021618 511.2702733615374 50.09 0.69792 53.317 52.916 53.614 3.2262 86 38 3 0 0 0 0.82752 1 11076 11076 7.9102 1.187 1 72098 + 4770 21164 3021 3025 6026 6026 0.0145686606357458 EDKYKIKQ 8 Unmodified _EDKYKIKQ_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MSMS UPN46_class_I_Rep_3 1 526.2904663085938 2 526.292756 1050.57096 NaN NaN NaN NaN NaN NaN NaN 66.756 1 66.756 66.256 67.256 0 0 0 0 0.40738 1 15164 15164 0.79363 0 1 4771 4418 3022 3026 6027 6027 0.04769725614687559 EDLEKQRAL 9 Unmodified _EDLEKQRAL_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MSMS UPN46_class_I_Rep_3 1 551.2978515625 2 551.29857 1100.58259 NaN NaN NaN NaN NaN NaN NaN 30.086 1 30.086 29.586 30.586 0 0 0 0 0.38784 1 4851 4851 3.5965 0 1 4772 2024 3023 3027 6028 6028 0.03631922638055585 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN46_class_I_Rep_3 1 483.179443359375 2 482.771126 963.527698 0.21183 0.00010227 -0.092755 -4.4779E-05 0.11908 5.7488E-05 482.7709881835139 64.844 0.81628 64.844 64.546 65.363 0 215 85 4 0 0 0 0.82752 7 14559 14559;14584;14625;14659;14695;14735;14769 112.59 7.794 1 3399500 + 4773 640 3024 3028 6029;6030;6031;6032;6033;6034;6035 6029 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN47_class_I_Rep_1 2 482.7704772949219 2 482.771126 963.527698 0.16072 7.7593E-05 -0.017573 -8.4837E-06 0.14315 6.9109E-05 482.7710508223737 59.572 0.96078 62.97 62.54 63.501 3.3982 147 63 3 0 0 0 0.82752 5 13745 13745;13785;13827;13869;13906 39.957 5.8549 1 769370 + 4774 640 3024 3028 6036;6037;6038;6039;6040 6036 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN47_class_I_Rep_2 3 482.7709655761719 2 482.771126 963.527698 0.25996 0.0001255 -0.15603 -7.5329E-05 0.10392 5.017E-05 482.7709754602953 59.864 1.0428 63.137 62.665 63.707 3.2731 151 65 4 0 0 0 0.82752 5 14072 13896;13939;13983;14022;14072 54.774 6.4277 1 810500 + 4775 640 3024 3028 6041;6042;6043;6044;6045 6045 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN47_class_I_Rep_3 4 482.7710876464844 2 482.771126 963.527698 0.03254 1.5709E-05 0.080962 3.9086E-05 0.1135 5.4795E-05 482.771088467094 59.903 1.0403 63.068 62.683 63.723 3.1651 160 69 4 0 0 0 0.82752 6 13959 13959;13996;14039;14078;14120;14172 39.957 5.8549 1 706840 + 4776 640 3024 3028 6046;6047;6048;6049;6050;6051 6046 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN48_class_I_Rep_1 5 482.7711486816406 2 482.771126 963.527698 0.27811 0.00013426 -0.12996 -6.274E-05 0.14815 7.1522E-05 482.7709536164346 59.764 0.84217 63.244 62.889 63.731 3.4801 142 63 3 0 0 0 0.82752 5 13089 13089;13128;13167;13208;13250 39.957 5.8549 1 683290 + 4777 640 3024 3028 6052;6053;6054;6055;6056 6052 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN48_class_I_Rep_2 6 482.7705993652344 2 482.771126 963.527698 0.3196 0.00015429 -0.2204 -0.0001064 0.099198 4.789E-05 482.7709289016722 59.656 0.82279 63.143 62.822 63.644 3.4868 155 64 3 0 0 0 0.82752 5 13042 13042;13080;13121;13161;13201 39.957 5.8549 1 862190 + 4778 640 3024 3028 6057;6058;6059;6060;6061 6057 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MSMS UPN48_class_I_Rep_2 6 482.77056884765625 2 482.771126 963.527698 NaN NaN NaN NaN NaN NaN NaN 60.159 1 63.646 63.146 64.146 3.4868 0 0 0 0.39996 1 13260 13260 7.9102 3.1541 1 + 4779 640 3024 3028 6062 6062 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MSMS UPN48_class_I_Rep_3 7 483.2729797363281 2 482.771126 963.527698 0.19905 9.6094E-05 -0.043006 -2.0762E-05 0.15604 7.5332E-05 482.77098370538044 59.629 0.82528 63.146 62.734 63.559 3.5169 148 64 3 0 0 0 0.82752 6 12932 12932;12974;13013;13053;13090;13136 39.957 5.8549 1 641610 + 4780 640 3024 3028 6063;6064;6065;6066;6067;6068 6063 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-SECPEP UPN48_class_I_Rep_3 7 483.2729797363281 2 482.771126 963.527698 0.19905 9.6094E-05 -0.043006 -2.0762E-05 0.15604 7.5332E-05 482.77098370538044 59.629 0.82528 63.146 62.734 63.559 3.5169 148 64 3 0 0 0 0.72333 1 12932 12932 7.9102 3.1541 1 641610 + 4781 640 3024 3028 6069 6069 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 482.771126 963.527698 0.27811 0.00013426 -0.12996 -6.274E-05 0.14815 7.1522E-05 482.7709536164346 59.764 0.84217 63.244 62.889 63.731 3.4801 0.12628 -5.6757E-05 NaN 39.957 142 63 3 NaN NaN NaN NaN 0 NaN NaN 0 683290 + 4782 640 3024 3028 0.044475358374370444 EDLIAYLK 8 Unmodified _EDLIAYLK_ 0 0 0 CON__P62894 CON__P62894 CON__P62894 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 482.771126 963.527698 0.3196 0.00015429 -0.2204 -0.0001064 0.099198 4.789E-05 482.7709289016722 59.656 0.82279 63.143 62.822 63.644 3.4868 0.024945 -0.00014408 NaN 39.957 155 64 3 NaN NaN NaN NaN 0 NaN NaN 0 862190 + 4783 640 3024 3028 0.044475358374370444 EDLKFFFPH 9 Unmodified _EDLKFFFPH_ 0 0 0 ENSG00000205301|ENST00000511113|MGAT4D ENSG00000205301|ENST00000511113|MGAT4D ENSG00000205301|ENST00000511113|MGAT4D MSMS UPN48_class_I_Rep_1 5 590.2951049804688 2 590.295299 1178.57605 NaN NaN NaN NaN NaN NaN NaN 46.049 1 49.567 49.067 50.067 3.5184 0 0 0 0.39518 1 8948 8948 1.8442 0.19162 1 4784 5556 3025 3029 6070 6070 -0.006099705226688457 EDLLCKLQ 8 Unmodified _EDLLCKLQ_ 0 0 0 REV__ENSG00000150667|ENST00000350221|FSIP1 REV__ENSG00000150667|ENST00000350221|FSIP1 MSMS UPN46_class_I_Rep_3 1 481.2688903808594 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 25.091 1 25.091 24.591 25.591 0 0 0 0 0.4044 1 3390 3390 4.756 0 1 + 4785 19638 3026 3030 6071 6071 0.013190054429401243 EDLLDLLH 8 Unmodified _EDLLDLLH_ 0 0 0 REV__nc|ENSG00000109572|P51790-4|CLCN3 REV__nc|ENSG00000109572|P51790-4|CLCN3 MULTI-MSMS UPN46_class_I_Rep_3 1 484.2581481933594 2 484.258382 966.502212 0.23222 0.00011245 -0.20887 -0.00010115 0.023345 1.1305E-05 484.2581715397565 70.452 0.10332 70.452 70.373 70.477 0 16 10 2 0 0 0 0.82752 1 16182 16182 30.225 0 1 108950 + 4786 18408 3027 3031 6072 6072 0.017620613150143072 EDLLFFYR 8 Unmodified _EDLLFFYR_ 0 0 0 nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS UPN46_class_I_Rep_3 1 551.7808837890625 2 551.782025 1101.5495 NaN NaN NaN NaN NaN NaN NaN 14.285 1 14.285 13.785 14.785 0 0 0 0 0.40746 1 596 596 0.69038 0 1 4787 2162 3028 3032 6073 6073 0.0027834058598728006 EDLSKPQNY 9 Unmodified _EDLSKPQNY_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN48_class_I_Rep_2 6 547.2633666992188 2 547.261653 1092.50875 NaN NaN NaN NaN NaN NaN NaN 43.988 1 47.749 47.249 48.249 3.7617 0 0 0 0.37692 1 8333 8333 6.2058 0.44535 1 + 4788 21046 3029 3033 6074 6074 -0.03380045524272646 EDLVARVF 8 Unmodified _EDLVARVF_ 0 0 0 ENST00000465525.6_1_1:29647190-29652170:+|nuORF;nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU ENST00000465525.6_1_1:29647190-29652170:+|nuORF ENST00000465525.6_1_1:29647190-29652170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 474.7607727050781 2 474.761092 947.507631 -0.32869 -0.00015605 -1.0981 -0.00052133 -1.4268 -0.00067738 474.76101280312105 42.459 0.99269 45.699 45.236 46.228 3.2394 114 69 2 0 0 0 0.82752 1 8747 8747 11.64 0.81637 1 151710 4789 967 3030 3034 6075 6075 0.03177784897479796 EDMIQNII 8 Unmodified _EDMIQNII_ 0 0 0 REV__ENST00000504743.1_1_4:2343156-2366458:-|nuORF REV__ENST00000504743.1_1_4:2343156-2366458:-|nuORF MSMS UPN47_class_I_Rep_1 2 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.314 1 29.064 28.564 29.564 3.7495 0 0 0 0.40404 1 3454 3454 5.2307 0 1 + 4790 19871 3031 3035 6076 6076 -0.013975849367511728 EDMLQLIN 8 Unmodified _EDMLQLIN_ 0 0 0 ENST00000583732.1_1_17:17722402-17726886:-|nuORF;ENST00000476994.1_1_17:17723326-17726886:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1 ENST00000583732.1_1_17:17722402-17726886:-|nuORF ENST00000583732.1_1_17:17722402-17726886:-|nuORF MSMS UPN47_class_I_Rep_2 3 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.53 1 31.028 30.528 31.528 3.4986 0 0 0 0.4044 1 4147 4147 4.756 0 1 4791 1099 3032 3036 6077 6077 -0.013975849367398041 EDMLQLIN 8 Unmodified _EDMLQLIN_ 0 0 0 ENST00000583732.1_1_17:17722402-17726886:-|nuORF;ENST00000476994.1_1_17:17723326-17726886:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1 ENST00000583732.1_1_17:17722402-17726886:-|nuORF ENST00000583732.1_1_17:17722402-17726886:-|nuORF MSMS UPN47_class_I_Rep_3 4 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.121 1 30.464 29.964 30.964 3.3422 0 0 0 0.39996 1 4073 4073 7.9102 2.6795 1 4792 1099 3032 3036 6078 6078 -0.013975849367398041 EDMPRVRK 8 Unmodified _EDMPRVRK_ 0 0 0 nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5 nc|ENSG00000119231|Q96HI0-2|SENP5 nc|ENSG00000119231|Q96HI0-2|SENP5 MSMS UPN47_class_I_Rep_1 2 515.7379150390625 2 515.776751 1029.53895 NaN NaN NaN NaN NaN NaN NaN 31.115 1 34.844 34.344 35.344 3.7293 0 0 0 0.40604 1 5176 5176 2.5775 0.51773 1 4793 2274 3033 3037 6079 6079 0.025360346599200057 EDNENRALLP 10 Unmodified _EDNENRALLP_ 0 0 0 REV__nc|ENSG00000115155|Q9HC10-3|OTOF;REV__nc|ENSG00000115155|Q9HC10-5|OTOF REV__nc|ENSG00000115155|Q9HC10-5|OTOF MSMS UPN47_class_I_Rep_3 4 585.79248046875 2 585.791109 1169.56767 NaN NaN NaN NaN NaN NaN NaN 54.048 1 57.233 56.733 57.733 3.1856 0 0 0 0.53105 1 12240 12240 5.7319 0.97584 1 + 4794 18543;31965 3034 3038 6080 6080 -0.01033569229934983 EDNGFYPCPC 10 Unmodified _EDNGFYPCPC_ 0 0 0 L1PA11_dup4008|chr21:15021663-15022562:+|1.8153883585195865|0.0321061717386564|5.82|149.0|48|2|anti-sense L1PA11_dup4008|chr21:15021663-15022562:+|1.8153883585195865|0.0321061717386564|5.82|149.0|48|2|anti-sense L1PA11_dup4008|chr21:15021663-15022562:+|1.8153883585195865|0.0321061717386564|5.82|149.0|48|2|anti-sense MSMS UPN47_class_I_Rep_2 3 572.7619018554688 2 572.707342 1143.40013 NaN NaN NaN NaN NaN NaN NaN 116.91 1 120.4 119.9 120.9 3.4891 0 0 0 0.53105 1 28557 28557 1.8442 0.19162 1 4795 13685 3035 3039 6081 6081 -0.16583296090561817 EDNGIIKAF 9 Unmodified _EDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 503.7638854980469 2 503.763832 1005.51311 0.070705 3.5619E-05 0.10742 5.4116E-05 0.17813 8.9735E-05 503.7637759358725 50.501 1.1054 54.129 53.78 54.886 3.6285 106 51 3 0 0 0 0.0094161 2 11100 11059;11100 70.332 16.499 1 491680 4796 4682 3036 3040 6082;6083 6083 0.010574636892897615 EDNGIIKAF 9 Unmodified _EDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 503.7638244628906 2 503.763832 1005.51311 0.21943 0.00011054 -0.083129 -4.1877E-05 0.1363 6.8663E-05 503.7636717795537 50.816 1.0358 54.155 53.81 54.846 3.3386 130 54 3 0 0 0 0.0053074 2 11169 11169;11210 79.596 25.764 1 542150 4797 4682 3036 3040 6084;6085 6084 0.010574636892897615 EDNGIIKAF 9 Unmodified _EDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 503.7638244628906 2 503.763832 1005.51311 0.33335 0.00016793 -0.12483 -6.2886E-05 0.20852 0.00010505 503.76364376998947 50.918 1.0122 54.134 53.756 54.768 3.2163 130 52 3 0 0 0 0.0060693 2 11270 11270;11314 96.367 42.534 1 484300 4798 4682 3036 3040 6086;6087 6086 0.010574636892897615 EDNGIIKAF 9 Unmodified _EDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 503.763832 1005.51311 0.23991 0.00012086 3.5755 0.0018012 3.8154 0.0019221 503.76610969058044 53.806 0.071724 53.806 53.753 53.825 0 -0.24978 0.0036454 NaN 79.596 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 75313 4799 4682 3036 3040 0.010574636892897615 EDNKNSLI 8 Unmodified _EDNKNSLI_ 0 0 0 nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE nc|ENSG00000109472|P16870-2|CPE nc|ENSG00000109472|P16870-2|CPE MULTI-MSMS UPN46_class_I_Rep_3 1 466.7374572753906 2 466.737814 931.461075 0.21933 0.00010237 -0.091882 -4.2885E-05 0.12745 5.9486E-05 466.73773174978515 41.551 0.47659 41.551 41.195 41.671 0 77 48 2 0 0 0 0.82752 1 8123 8123 24.021 0 1 206260 4800 1897 3037 3041 6088 6088 -0.0073969972447684995 EDNPKCYPPR 10 Unmodified _EDNPKCYPPR_ 0 0 0 ENSG00000221866|ENST00000321063|PLXNA4;PLXNA4|p.S395Rfs*4|1|0.07|ENSG00000221866|chr7:132507509-132507509|A/-|frameshift_variant;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 MSMS UPN46_class_I_Rep_3 1 406.8719177246094 3 406.857245 1217.54991 NaN NaN NaN NaN NaN NaN NaN 34.655 1 34.655 34.155 35.155 0 0 0 0 0.53105 1 6215 6215 3.3196 0.47636 1 4801 5644 3038 3042 6089 6089 -0.05016607756488156 EDNRIKSP 8 Unmodified _EDNRIKSP_ 0 0 0 L1ME1_dup16806|chr9:100199621-100200814:-|1.8536988505861105|0.0116090864024259|7.32|150.0|19|2|sense L1ME1_dup16806|chr9:100199621-100200814:-|1.8536988505861105|0.0116090864024259|7.32|150.0|19|2|sense L1ME1_dup16806|chr9:100199621-100200814:-|1.8536988505861105|0.0116090864024259|7.32|150.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 479.7638244628906 2 479.751256 957.487959 NaN NaN NaN NaN NaN NaN NaN 48.365 1 48.365 47.865 48.865 0 0 0 0 0.40157 1 10071 10071 7.2892 0 1 4802 12251 3039 3043 6090 6090 0.007514088867196733 EDPDKKGESK 10 Unmodified _EDPDKKGESK_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MSMS UPN46_class_I_Rep_3 1 566.7756958007812 2 566.777667 1131.54078 NaN NaN NaN NaN NaN NaN NaN 39.235 1 39.235 38.735 39.735 0 0 0 0 0.53105 1 7524 7524 1.1933 0.50296 1 4803 4742 3040 3044 6091 6091 -0.019726778411268242 EDPNQFNQKQ 10 Unmodified _EDPNQFNQKQ_ 0 0 0 L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|13|1|sense L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|13|1|sense L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 624.2862548828125 2 624.286191 1246.55783 0.4755 0.00029685 -0.38163 -0.00023825 0.093871 5.8603E-05 624.285867231593 35.167 0.5835 38.682 38.408 38.992 3.5144 102 59 2 0 0 0 0.56333 1 5806 5806 1.4819 0.15237 1 182450 4804 15398 3041 3045 6092 6092 -0.05558757235326084 EDQANQTLARY 11 Unmodified _EDQANQTLARY_ 0 0 0 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 MSMS UPN47_class_I_Rep_3 4 436.8782958984375 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 17.465 1 20.823 20.323 21.323 3.3581 0 0 0 0.38417 1 1282 1282 1.0136 0.23704 1 4805 16614 3042 3046 6093 6093 -0.030907991725143802 EDQELAGI 8 Unmodified _EDQELAGI_ 0 0 0 REV__ENSG00000076356|ENST00000367033|PLXNA2 REV__ENSG00000076356|ENST00000367033|PLXNA2 MULTI-MSMS UPN47_class_I_Rep_1 2 437.7112121582031 2 437.711265 873.407977 -0.38952 -0.0001705 0.086421 3.7828E-05 -0.3031 -0.00013267 437.7112307496103 36.444 0.48319 40.113 39.847 40.33 3.6692 45 36 2 0 0 0 0.82752 1 6810 6810 12.532 0 1 87874 + 4806 17865 3043 3047 6094 6094 -0.03379077507133843 EDQFVSIRY 9 Unmodified _EDQFVSIRY_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|74|1|sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|74|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 578.7853393554688 2 578.785296 1155.55604 0.43307 0.00025065 -0.40418 -0.00023393 0.028892 1.6722E-05 578.7850620256147 61.648 0.40405 61.648 61.485 61.889 0 71 38 2 0 0 0 0.20317 1 13751 13751 20.415 4.2654 1 372390 + 4807 25855 3044 3048 6095 6095 -0.01551766253282949 EDRERRYR 8 Unmodified _EDRERRYR_ 0 0 0 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 MSMS UPN48_class_I_Rep_3 7 590.302734375 2 590.30251 1178.59047 NaN NaN NaN NaN NaN NaN NaN 30.845 1 34.559 34.059 35.059 3.7146 0 0 0 0.40746 1 4495 4495 0.69038 0.088878 1 4808 2556 3045 3049 6096 6096 0.008314946781865729 EDRETGII 8 Unmodified _EDRETGII_ 0 0 0 REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 466.73876953125 2 466.737814 931.461075 0.21933 0.00010237 -0.091882 -4.2885E-05 0.12745 5.9486E-05 466.73773174978515 41.551 0.47659 41.551 41.195 41.671 0 77 48 2 0 0 0 0.82752 1 8085 8085 10.074 0 1 206260 + 4809 20612 3046 3050 6097 6097 -0.0073969972447684995 EDRKVLIR 8 Unmodified _EDRKVLIR_ 0 0 0 REV__ENSG00000141543|ENST00000649764|EIF4A3 REV__ENSG00000141543|ENST00000649764|EIF4A3 MSMS UPN46_class_I_Rep_3 1 514.4284057617188 2 514.81419 1027.61383 NaN NaN NaN NaN NaN NaN NaN 36.309 1 36.309 35.809 36.809 0 0 0 0 0.40746 1 6716 6716 0.69038 0 1 + 4810 19384 3047 3051 6098 6098 0.1011254046279646 EDRPLYYY 8 Unmodified _EDRPLYYY_ 0 0 0 L1MD3_dup773|chr2:207590818-207591423:-|1.057086177188785|0.0413992510258904|4.67|151.0|29|1|anti-sense L1MD3_dup773|chr2:207590818-207591423:-|1.057086177188785|0.0413992510258904|4.67|151.0|29|1|anti-sense L1MD3_dup773|chr2:207590818-207591423:-|1.057086177188785|0.0413992510258904|4.67|151.0|29|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 560.328857421875 2 559.761289 1117.50803 0.51703 0.00028941 -2.6022 -0.0014566 -2.0852 -0.0011672 559.7597093517729 53.972 0.43555 57.291 57.108 57.544 3.3187 33 25 2 0 0 0 0.72333 1 12133 12133 6.3541 0 1 47016 4811 12081 3048 3052 6099 6099 -0.04602840173333789 EDRPQLASEVY 11 Unmodified _EDRPQLASEVY_ 0 0 0 REV__L1PA6_dup4888|chr13:40837732-40841867:+|1.314296541976958|0.4091051293608128|1.68|151.0|243|3|anti-sense REV__L1PA6_dup4888|chr13:40837732-40841867:+|1.314296541976958|0.4091051293608128|1.68|151.0|243|3|anti-sense MSMS UPN47_class_I_Rep_2 3 436.2140197753906 3 436.213975 1305.62009 NaN NaN NaN NaN NaN NaN NaN 18.402 1 21.792 21.292 22.292 3.3898 0 0 0 0.38417 1 1549 1549 4.7159 1.1289 1 + 4812 29923 3049 3053 6100 6100 -0.020490308870193985 EDRQNFEFL 9 Unmodified _EDRQNFEFL_ 0 0 0 REV__nc|ENSG00000131196|O95644-11|NFATC1 REV__nc|ENSG00000131196|O95644-11|NFATC1 MSMS UPN47_class_I_Rep_2 3 599.2796630859375 2 599.280377 1196.5462 NaN NaN NaN NaN NaN NaN NaN 66.973 1 70.237 69.737 70.737 3.2636 0 0 0 0.39518 1 16124 16124 1.8442 0.19162 1 + 4813 31978 3050 3054 6101 6101 -0.044209542586713724 EDRRKPPII 9 Unmodified _EDRRKPPII_ 0 0 0 MSTB1_dup1986|chr7:100276845-100277241:+|1.6206662401613343|0.0769969708880261|4.4|151.0|25|3|anti-sense MSTB1_dup1986|chr7:100276845-100277241:+|1.6206662401613343|0.0769969708880261|4.4|151.0|25|3|anti-sense MSTB1_dup1986|chr7:100276845-100277241:+|1.6206662401613343|0.0769969708880261|4.4|151.0|25|3|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3350830078125 2 562.332747 1122.65094 NaN NaN NaN NaN NaN NaN NaN 40.073 1 40.073 39.573 40.573 0 0 0 0 0.39428 1 7754 7754 2.0598 0 1 4814 16579 3051 3055 6102 6102 0.09452212008568495 EDSFHLIL 8 Unmodified _EDSFHLIL_ 0 0 0 REV__L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|66|2|sense REV__L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|66|2|sense MSMS UPN47_class_I_Rep_1 2 486.8018798828125 2 487.2531 972.491647 NaN NaN NaN NaN NaN NaN NaN 88.618 1 92.274 91.774 92.774 3.6563 0 0 0 0.40581 1 22163 22163 2.8892 0 1 + 4815 29563 3052 3056 6103 6103 0.004300786605767826 EDSIRRKGF 9 Unmodified _EDSIRRKGF_ 0 0 0 ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;ENSG00000144285|ENST00000674923|SCN1A ENST00000480032.4_1_2:166152333-166226884:+|nuORF ENST00000480032.4_1_2:166152333-166226884:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.74365234375 2 554.298904 1106.58326 NaN NaN NaN NaN NaN NaN NaN 58.004 1 61.518 61.018 62.018 3.5142 0 0 0 0.39326 1 12595 12595 2.3027 0.24298 1 4816 2974 3053 3057 6104 6104 0.0342276207775285 EDSQLVQY 8 Unmodified _EDSQLVQY_ 0 0 0 REV__ENSG00000233608|ENST00000612363|TWIST2 REV__ENSG00000233608|ENST00000612363|TWIST2 MSMS UPN46_class_I_Rep_3 1 491.2479248046875 2 491.229822 980.445091 NaN NaN NaN NaN NaN NaN NaN 25.489 1 25.489 24.989 25.989 0 0 0 0 0.40364 1 3504 3504 5.7604 0 1 + 4817 18757 3054 3058 6105 6105 -0.045914059613664904 EDTAKKLML 9 Unmodified _EDTAKKLML_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MSMS UPN48_class_I_Rep_3 7 524.8056640625 2 524.788992 1047.56343 NaN NaN NaN NaN NaN NaN NaN 59.278 1 62.801 62.301 63.301 3.5231 0 0 0 0.35339 1 12924 12924 7.9102 0.62092 1 + 4818 18881 3055 3059 6106 6106 0.04155250022790824 EDTNFWMEE 9 Unmodified _EDTNFWMEE_ 0 0 0 REV__nc|ENSG00000100796|Q6IN85-4|PPP4R3A REV__nc|ENSG00000100796|Q6IN85-4|PPP4R3A MSMS UPN47_class_I_Rep_2 3 600.7305297851562 2 600.729329 1199.4441 NaN NaN NaN NaN NaN NaN NaN 79.328 1 82.683 82.183 83.183 3.3554 0 0 0 0.39598 1 19742 19742 1.6526 0 1 + 4819 18133 3056 3060 6107 6107 -0.14763988392587635 EDTPFLGIQN 10 Unmodified _EDTPFLGIQN_ 0 0 0 nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1 nc|ENSG00000157168|Q02297-11|NRG1 nc|ENSG00000157168|Q02297-11|NRG1 MULTI-MSMS UPN47_class_I_Rep_2 3 567.2769775390625 2 567.277303 1132.54005 0.51798 0.00029384 0.15674 8.8917E-05 0.67473 0.00038276 567.2772483151367 55.431 0.86356 58.741 58.418 59.282 3.3102 78 50 3 0 0 0 0.56118 1 12631 12631 2.9952 0.41776 1 117410 4820 3753 3057 3061 6108 6108 -0.02091472490178603 EDVAIHYL 8 Unmodified _EDVAIHYL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MSMS UPN46_class_I_Rep_3 1 480.24542236328125 2 480.245275 958.475997 0.21826 0.00010482 -0.27105 -0.00013017 -0.05279 -2.5352E-05 480.245030732155 69.455 0.45266 69.455 69.202 69.655 0 62 48 2 0 0 0 0.82752 2 15893 15893;15942 19.439 2.4967 1 131890 + 4821 20234 3058 3062 6109;6110 6109 -0.004902078564896328 EDVANKVGY 9 Unmodified _EDVANKVGY_ 0 0 0 ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;ENST00000525367.1_1_11:11901789-11906208:+|nuORF ENSG00000170242|ENST00000527733|USP47 ENSG00000170242|ENST00000527733|USP47 MSMS UPN46_class_I_Rep_3 1 497.6842041015625 2 497.745639 993.476725 NaN NaN NaN NaN NaN NaN NaN 37.318 1 37.318 36.818 37.818 0 0 0 0 0.29868 1 7005 7005 10.824 0 1 4822 4462 3059 3063 6111 6111 -0.02027413207429163 EDVASLQSF 9 Unmodified _EDVASLQSF_ 0 0 0 ENSG00000178171|ENST00000321420|AMER3 ENSG00000178171|ENST00000321420|AMER3 ENSG00000178171|ENST00000321420|AMER3 MULTI-MSMS UPN46_class_I_Rep_3 1 498.2375793457031 2 498.237647 994.460741 0.10833 5.3974E-05 0.27153 0.00013529 0.37986 0.00018926 498.2377211715159 32.691 0.38832 32.691 32.541 32.93 0 30 25 2 0 0 0 0.23293 1 5630 5630 18.146 1.2041 1 51617 4823 4815 3060 3064 6112 6112 -0.03671119444322812 EDVEKSEH 8 Unmodified _EDVEKSEH_ 0 0 0 L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|108|2|sense;L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|62|1|sense L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|108|2|sense L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|108|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 486.727783203125 2 486.717079 971.419604 -0.058949 -2.8691E-05 -0.06015 -2.9276E-05 -0.1191 -5.7968E-05 486.71703165230855 26.231 0.66516 26.231 25.968 26.633 0 88 59 2 0 0 0 0.72333 1 3675 3675 10.074 2.1638 1 107790 4824 14247 3061 3065 6113 6113 -0.06724880483795914 EDVSRDSF 8 Unmodified _EDVSRDSF_ 0 0 0 ENST00000460587.1_1_9:135979935-135983404:-|nuORF;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;nc|ENSG00000160271|Q12967-2|RALGDS ENST00000460587.1_1_9:135979935-135983404:-|nuORF ENST00000460587.1_1_9:135979935-135983404:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 477.7114562988281 2 477.711796 953.40904 -0.083504 -3.9891E-05 -0.32739 -0.0001564 -0.41089 -0.00019629 477.71161781084805 26.235 0.71402 26.235 25.91 26.624 0 98 61 2 0 0 0 0.82752 1 3712 3712 14.838 4.0143 1 140170 4825 3863 3062 3066 6114 6114 -0.06952863138224075 EDVTGPHEA 9 Unmodified _EDVTGPHEA_ 0 0 0 ENSG00000155592|ENST00000328086|ZKSCAN2;nc|ENSG00000155592|Q63HK3-2|ZKSCAN2;ENST00000565590.1_1_16:25258001-25268460:-|nuORF ENSG00000155592|ENST00000328086|ZKSCAN2 ENSG00000155592|ENST00000328086|ZKSCAN2 MULTI-MSMS UPN46_class_I_Rep_3 1 477.7111511230469 2 477.711796 953.40904 -0.083504 -3.9891E-05 -0.32739 -0.0001564 -0.41089 -0.00019629 477.71161781084805 26.235 0.71402 26.235 25.91 26.624 0 98 61 2 0 0 0 0.35081 3 3672 3672;3748;3786 10.824 0 1 140170 4826 3706 3063 3067 6115;6116;6117 6115 -0.06952863138235443 EDVVRFRI 8 Unmodified _EDVVRFRI_ 0 0 0 REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 516.7971801757812 2 517.293091 1032.57163 -0.32167 -0.0001664 0.48074 0.00024868 0.15907 8.2286E-05 517.2933152940013 35.684 0.7967 39.096 38.802 39.599 3.4114 73 54 2 0 0 0 0.72333 1 6723 6723 0.79363 0 1 101670 + 4827 18112 3064 3068 6118 6118 0.05664565054416926 EDVWRRLVKEV 11 Unmodified _EDVWRRLVKEV_ 0 0 0 REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD MSMS UPN46_class_I_Rep_3 1 476.9356994628906 3 476.936776 1427.7885 NaN NaN NaN NaN NaN NaN NaN 63.943 1 63.943 63.443 64.443 0 0 0 0 0.38417 1 14367 14367 1.2148 0 1 + 4828 20881 3065 3069 6119 6119 0.09171495817304276 EDWLPVWRY 9 Unmodified _EDWLPVWRY_ 0 0 0 REV__L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|10|1|sense REV__L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 632.30908203125 2 632.31148 1262.60841 NaN NaN NaN NaN NaN NaN NaN 67.498 1 70.995 70.495 71.495 3.4964 0 0 0 0.39518 1 15504 15504 1.8442 0.51471 1 + 4829 28842 3066 3070 6120 6120 -0.012391831196737257 EDYNLIVIER 10 Unmodified _EDYNLIVIER_ 0 0 0 ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000130726|Q13263-2|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 MULTI-MSMS UPN48_class_I_Rep_1 5 632.3313598632812 2 632.33261 1262.65067 0.56477 0.00035712 -0.39752 -0.00025136 0.16725 0.00010576 632.3323034060062 58.91 0.58465 62.397 62.091 62.676 3.487 63 37 2 0 0 0 0.46001 2 12913 12913;12942 14.957 5.574 1 172400 4830 2673 3067 3071 6121;6122 6121 0.029847474980442712 EDYNLIVIER 10 Unmodified _EDYNLIVIER_ 0 0 0 ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000130726|Q13263-2|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 MULTI-MSMS UPN48_class_I_Rep_2 6 632.3333129882812 2 632.33261 1262.65067 0.58379 0.00036915 -0.10065 -6.3645E-05 0.48314 0.0003055 632.3324367371123 58.838 0.54749 62.337 62.057 62.605 3.4987 59 33 2 0 0 0 0.29657 5 12884 12800;12816;12840;12884;12896 34.222 6.9985 1 190040 4831 2673 3067 3071 6123;6124;6125;6126;6127 6126 0.029847474980442712 EDYNLIVIER 10 Unmodified _EDYNLIVIER_ 0 0 0 ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000130726|Q13263-2|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 ENSG00000130726|ENST00000253024|TRIM28 MULTI-MSMS UPN48_class_I_Rep_3 7 632.834716796875 2 632.33261 1262.65067 0.56708 0.00035858 -0.30037 -0.00018993 0.26671 0.00016865 632.3321458154447 58.719 0.62357 62.242 61.92 62.543 3.5231 65 41 2 0 0 0 0.2146 1 12702 12702 44.392 6.2164 1 158510 4832 2673 3067 3071 6128 6128 0.029847474980442712 EDYNPYLF 8 Unmodified _EDYNPYLF_ 0 0 0 L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_1 5 530.7344970703125 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 21.783 1 25.336 24.836 25.836 3.5533 0 0 0 0.40738 1 2041 2041 0.79363 0 1 4833 10577 3068 3072 6129 6129 -0.07242217955990782 EDYNPYLF 8 Unmodified _EDYNPYLF_ 0 0 0 L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7352294921875 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 18.653 1 22.304 21.804 22.804 3.6509 0 0 0 0.40738 1 1285 1285 0.79363 0 1 4834 10577 3068 3072 6130 6130 -0.07242217955990782 EDYRTMSIL 9 Unmodified _EDYRTMSIL_ 0 0 0 L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|162|3|sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|162|3|sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|162|3|sense MSMS UPN48_class_I_Rep_1 5 564.7308349609375 2 564.273706 1126.53286 NaN NaN NaN NaN NaN NaN NaN 116.12 1 119.75 119.25 120.25 3.6282 0 0 0 0.39518 1 28267 28267 1.8442 0 1 4835 12236 3069 3073 6131 6131 -0.02534528362252786 EDYYSYRF 8 Unmodified _EDYYSYRF_ 0 0 0 REV__ENST00000441868.2_1_6:135219409-135219799:+|nuORF REV__ENST00000441868.2_1_6:135219409-135219799:+|nuORF MSMS UPN48_class_I_Rep_1 5 571.74072265625 2 571.743096 1141.47164 NaN NaN NaN NaN NaN NaN NaN 116.09 1 119.72 119.22 120.22 3.6282 0 0 0 0.40604 1 28260 28260 2.5775 0.27475 1 + 4836 19954 3070 3074 6132 6132 -0.09343717070032653 EEAAGPDDPSL 11 Unmodified _EEAAGPDDPSL_ 0 0 0 REV__ENST00000548159.5_2_12:70637993-70671955:+|nuORF REV__ENST00000548159.5_2_12:70637993-70671955:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 550.740234375 2 550.740751 1099.46695 0.4469 0.00024612 -0.2032 -0.00011191 0.2437 0.00013422 550.7407471351132 59.832 1.1571 63.23 62.806 63.963 3.3982 210 86 4 0 0 0 0.59712 1 14067 14067 5.2969 5.2969 1 1539300 + 4837 22947 3071 3075 6133 6133 -0.07880646003468428 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN47_class_I_Rep_1 2 575.80908203125 2 575.808771 1149.60299 -0.074806 -4.3074E-05 0.34144 0.00019661 0.26664 0.00015353 575.8088357923044 31.207 0.59853 34.937 34.669 35.268 3.7293 81 45 2 0 0 0 0.38714 1 5241 5241 8.7454 6.9012 1 124360 4838 3325 3072 3076 6134 6134 0.034170932978668134 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN47_class_I_Rep_2 3 575.8084106445312 2 575.808771 1149.60299 0.046188 2.6595E-05 0.13244 7.6258E-05 0.17862 0.00010285 575.8087587687947 31.481 0.76764 34.95 34.598 35.366 3.4691 115 62 2 0 0 0 0.38714 1 5363 5363 8.7454 6.4427 1 119300 4839 3325 3072 3076 6135 6135 0.034170932978668134 EEAEIIRKY 9 Unmodified _EEAEIIRKY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 575.808771 1149.60299 -0.15909 -9.1605E-05 0.45153 0.00026 0.29244 0.00016839 575.8089681305231 31.735 0.72648 35.034 34.654 35.38 3.2991 0.060275 0.00017055 NaN 8.7454 102 58 2 NaN NaN NaN NaN 0 NaN NaN 0 118900 4840 3325 3072 3076 0.034170932978668134 EEAHLNTSF 9 Unmodified _EEAHLNTSF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 524.2408447265625 2 524.240721 1046.46689 0.3163 0.00016582 -0.1112 -5.8293E-05 0.2051 0.00010752 524.24057866582 42.08 0.71004 42.08 41.836 42.546 0 236 81 4 0 0 0 0.0063213 5 8335 8265;8299;8335;8366;8405 96.936 47.003 1 2042600 4841 2102 3073 3077 6136;6137;6138;6139;6140 6138 -0.054486012128108996 EEAHLNTSF 9 Unmodified _EEAHLNTSF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 524.7431030273438 2 524.240721 1046.46689 -0.16285 -8.5374E-05 -0.23845 -0.000125 -0.4013 -0.00021038 524.2405378427912 38.264 0.68149 41.506 41.245 41.927 3.2414 93 50 2 0 0 0 0.26948 1 7374 7374 15.847 1.0089 1 196470 4842 2102 3073 3077 6141 6141 -0.054486012128108996 EEAKRRNY 8 Unmodified _EEAKRRNY_ 0 0 0 REV__ENSG00000206113|ENST00000635017|CFAP99 REV__ENSG00000206113|ENST00000635017|CFAP99 MSMS UPN48_class_I_Rep_1 5 533.2947387695312 2 533.275429 1064.53631 NaN NaN NaN NaN NaN NaN NaN 62.256 1 65.719 65.219 66.219 3.4625 0 0 0 0.40604 1 13917 13917 2.5775 0.51773 1 + 4843 21229 3074 3078 6142 6142 0.006619025266218159 EEALFQHF 8 Unmodified _EEALFQHF_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS UPN46_class_I_Rep_3 1 510.7431335449219 2 510.742899 1019.47125 0.24383 0.00012453 0.00088646 4.5275E-07 0.24471 0.00012499 510.7429470577822 60.69 0.36892 60.69 60.494 60.863 0 61 44 2 0 0 0 0.82752 2 13451 13451;13481 30.225 21.632 1 237360 4844 2936 3075 3079 6143;6144 6143 -0.037710919992491654 EEALILDNKY 10 Unmodified _EEALILDNKY_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS UPN46_class_I_Rep_3 1 604.3142700195312 2 604.313886 1206.61322 NaN NaN NaN NaN NaN NaN NaN 55.808 1 55.808 55.308 56.308 0 0 0 0 0.53105 1 12145 12145 38.615 22.466 1 4845 5383 3076 3080 6145 6145 0.018176562324242695 EEAPKFLAF 9 Unmodified _EEAPKFLAF_ 0 0 0 ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A ENSG00000007255|ENST00000585934|TRAPPC6A ENSG00000007255|ENST00000585934|TRAPPC6A MULTI-MSMS UPN46_class_I_Rep_3 1 526.2763671875 2 526.276575 1050.5386 0.28251 0.00014868 0.13705 7.2128E-05 0.41956 0.00022081 526.2765206897237 68.962 0.63168 68.962 68.823 69.455 0 97 65 2 0 0 0 0.13631 3 15804 15761;15804;15841 26.884 15.243 1 446380 4846 730 3077 3081 6146;6147;6148 6147 0.015349382117165078 EEAWAPTC 8 Unmodified _EEAWAPTC_ 0 0 0 REV__AluY_dup73298|chr12:123428132-123428435:-|2.1153709744514613|0.0326849445224137|6.02|151.0|3|1|sense REV__AluY_dup73298|chr12:123428132-123428435:-|2.1153709744514613|0.0326849445224137|6.02|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 453.6868896484375 2 453.686736 905.358918 NaN NaN NaN NaN NaN NaN NaN 98.506 1 102.11 101.61 102.61 3.6065 0 0 0 0.39624 1 23772 23772 9.3474 0 1 + 4847 17240 3078 3082 6149 6149 -0.09754689067744948 EEAWAPTC 8 Unmodified _EEAWAPTC_ 0 0 0 REV__AluY_dup73298|chr12:123428132-123428435:-|2.1153709744514613|0.0326849445224137|6.02|151.0|3|1|sense REV__AluY_dup73298|chr12:123428132-123428435:-|2.1153709744514613|0.0326849445224137|6.02|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 453.68670654296875 2 453.686736 905.358918 NaN NaN NaN NaN NaN NaN NaN 98.854 1 102.46 101.96 102.96 3.6065 0 0 0 0.39624 1 23858 23858 9.3474 0 1 + 4848 17240 3078 3082 6150 6150 -0.09754689067744948 EECCCCCCCD 10 Unmodified _EECCCCCCCD_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS UPN48_class_I_Rep_2 6 556.7990112304688 2 557.100769 1112.18699 NaN NaN NaN NaN NaN NaN NaN 101.98 1 105.71 105.21 106.21 3.7252 0 0 0 0.53105 1 24171 24171 0 0 1 + 4849 20348 3079 3083 6151 6151 -0.36462075791769166 EECCCCCCCD 10 Unmodified _EECCCCCCCD_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS UPN48_class_I_Rep_2 6 556.7988891601562 2 557.100769 1112.18699 NaN NaN NaN NaN NaN NaN NaN 102.06 1 105.79 105.29 106.29 3.7252 0 0 0 0.53105 1 24189 24189 0 0 1 + 4850 20348 3079 3083 6152 6152 -0.36462075791769166 EECYCLNVF 9 Unmodified _EECYCLNVF_ 0 0 0 L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|40|1|anti-sense L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|40|1|anti-sense L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.2279663085938 2 560.22791 1118.44127 0.51867 0.00029058 -0.088888 -4.9798E-05 0.42979 0.00024078 560.227812928364 81.907 0.64412 85.291 84.92 85.564 3.3839 141 73 2 0 0 0 0.41259 1 20455 20455 7.2892 0 1 385450 4851 10802 3080 3084 6153 6153 -0.11321535051115461 EEDDDDEAAGG 11 Unmodified _EEDDDDEAAGG_ 0 0 0 ENSG00000142409|ENST00000610935|ZNF787 ENSG00000142409|ENST00000610935|ZNF787 ENSG00000142409|ENST00000610935|ZNF787 MSMS UPN48_class_I_Rep_1 5 561.6889038085938 2 561.688912 1121.36327 NaN NaN NaN NaN NaN NaN NaN 82.691 1 86.266 85.766 86.766 3.5753 0 0 0 0.38417 1 19752 19752 0 0 1 4852 3250 3081 3085 6154 6154 -0.19255597901815236 EEDDEEDESC 10 Unmodified _EEDDEEDESC_ 0 0 0 REV__ENSG00000139977|ENST00000556492|NAA30 REV__ENSG00000139977|ENST00000556492|NAA30 MSMS UPN47_class_I_Rep_1 2 600.1809692382812 2 600.180063 1198.34557 NaN NaN NaN NaN NaN NaN NaN 117.3 1 120.91 120.41 121.41 3.6036 0 0 0 0.53105 1 29076 29076 0.40072 0 1 + 4853 19325 3082 3086 6155 6155 -0.2456668121894836 EEDEPEEWH 9 Unmodified _EEDEPEEWH_ 0 0 0 REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC MSMS UPN47_class_I_Rep_3 4 600.2275390625 2 600.228007 1198.44146 NaN NaN NaN NaN NaN NaN NaN 27.489 1 30.832 30.332 31.332 3.3422 0 0 0 0.4007 1 4179 4179 0.52476 0 1 + 4854 20000 3083 3087 6156 6156 -0.14982120525905884 EEDESEANEE 10 Unmodified _EEDESEANEE_ 0 0 0 REV__ENST00000427761.1_1_13:68406302-68406587:-|nuORF REV__ENST00000427761.1_1_13:68406302-68406587:-|nuORF MSMS UPN47_class_I_Rep_3 4 590.7078857421875 2 590.709844 1179.40514 NaN NaN NaN NaN NaN NaN NaN 22.932 1 26.282 25.782 26.782 3.3503 0 0 0 0.53105 1 2828 2828 1.3295 0 1 + 4855 22273 3084 3088 6157 6157 -0.17739042213270295 EEDEWLAP 8 Unmodified _EEDEWLAP_ 0 0 0 REV__AluJo_dup20085|chr5:32161121-32161441:+|1.6378195053797078|0.0370287794285583|5.47|151.0|1|1|sense REV__AluJo_dup20085|chr5:32161121-32161441:+|1.6378195053797078|0.0370287794285583|5.47|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 494.7196960449219 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 118.51 1 118.51 118.01 119.01 0 0 0 0 0.40738 1 29420 29420 0.79363 0.10326 1 + 4856 16987 3085 3089 6158 6158 -0.07567094852709033 EEDEWLAP 8 Unmodified _EEDEWLAP_ 0 0 0 REV__AluJo_dup20085|chr5:32161121-32161441:+|1.6378195053797078|0.0370287794285583|5.47|151.0|1|1|sense REV__AluJo_dup20085|chr5:32161121-32161441:+|1.6378195053797078|0.0370287794285583|5.47|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 494.7186279296875 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 112.6 1 116.26 115.76 116.76 3.6648 0 0 0 0.40738 1 26836 26836 0.79363 0 1 + 4857 16987 3085 3089 6159 6159 -0.07567094852709033 EEDHPLRL 8 Unmodified _EEDHPLRL_ 0 0 0 REV__MLT1G3_dup1830|chr11:34067937-34068482:-|1.2280819330149977|0.017676627876068|6.12|151.0|19|3|sense REV__MLT1G3_dup1830|chr11:34067937-34068482:-|1.2280819330149977|0.017676627876068|6.12|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 504.7592468261719 2 504.759081 1007.50361 0.2311 0.00011665 0.077366 3.9051E-05 0.30847 0.0001557 504.7591196680763 52.893 1.3613 56.412 55.963 57.324 3.5192 280 102 4 0 0 0 0.82752 4 10996 10996;11036;11118;11157 36.044 3.7387 1 4516800 + 4858 31734 3086 3090 6160;6161;6162;6163 6160 0.00015695403749305115 EEDHPLRL 8 Unmodified _EEDHPLRL_ 0 0 0 REV__MLT1G3_dup1830|chr11:34067937-34068482:-|1.2280819330149977|0.017676627876068|6.12|151.0|19|3|sense REV__MLT1G3_dup1830|chr11:34067937-34068482:-|1.2280819330149977|0.017676627876068|6.12|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 504.7591857910156 2 504.759081 1007.50361 0.35194 0.00017765 -0.025651 -1.2948E-05 0.32629 0.0001647 504.7590754809955 52.802 1.5726 56.412 55.933 57.505 3.6098 273 108 4 0 0 0 0.82752 4 10909 10909;11035;11073;11110 36.044 3.7387 1 5516400 + 4859 31734 3086 3090 6164;6165;6166;6167 6164 0.00015695403749305115 EEDHPLRL 8 Unmodified _EEDHPLRL_ 0 0 0 REV__MLT1G3_dup1830|chr11:34067937-34068482:-|1.2280819330149977|0.017676627876068|6.12|151.0|19|3|sense REV__MLT1G3_dup1830|chr11:34067937-34068482:-|1.2280819330149977|0.017676627876068|6.12|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 504.75921630859375 2 504.759081 1007.50361 0.13001 6.5622E-05 0.17853 9.0116E-05 0.30854 0.00015574 504.7591775106865 52.83 1.288 56.428 55.972 57.26 3.5979 270 90 5 0 0 0 0.82752 2 11012 11012;11056 36.044 1.6425 1 5643600 + 4860 31734 3086 3090 6168;6169 6168 0.00015695403749305115 EEDKHYHH 8 Unmodified _EEDKHYHH_ 0 0 0 REV__ENST00000494204.1_1_X:24833141-24859977:+|nuORF REV__ENST00000494204.1_1_X:24833141-24859977:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 547.736572265625 2 547.736137 1093.45772 -0.34113 -0.00018685 0.56811 0.00031118 0.22698 0.00012433 547.7365375192657 20.425 1.0475 23.775 23.356 24.403 3.3496 113 92 2 0 0 0 0.82752 1 2027 2027 0.79363 0.10326 1 95490 + 4861 18177 3087 3091 6170 6170 -0.0852694977847932 EEDLRTLFAN 10 Unmodified _EEDLRTLFAN_ 0 0 0 ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 MULTI-MSMS UPN47_class_I_Rep_1 2 604.3016967773438 2 604.30131 1206.58807 0.42418 0.00025633 0.041943 2.5346E-05 0.46612 0.00028168 604.3013111205127 61.296 1.7576 64.678 64.281 66.039 3.3815 334 125 5 0 0 0 0.4965 1 14493 14493 12.241 1.4411 1 4193300 4862 2225 3088 3092 6171 6171 -0.006963985701304409 EEDLRTLFAN 10 Unmodified _EEDLRTLFAN_ 0 0 0 ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 MULTI-MSMS UPN47_class_I_Rep_2 3 604.301513671875 2 604.30131 1206.58807 0.45928 0.00027754 0.024845 1.5014E-05 0.48412 0.00029256 604.3012696798097 61.535 1.5788 64.794 64.369 65.948 3.2594 293 103 5 0 0 0 0.43106 1 14564 14564 17.113 2.2746 1 3363600 4863 2225 3088 3092 6172 6172 -0.006963985701304409 EEDNEEEDPK 10 Unmodified _EEDNEEEDPK_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MSMS UPN47_class_I_Rep_3 4 617.2432250976562 2 617.241312 1232.46807 NaN NaN NaN NaN NaN NaN NaN 44.571 1 47.816 47.316 48.316 3.2441 0 0 0 0.53105 1 9360 9360 2.9952 0 1 4864 5492 3089 3093 6173 6173 -0.13886476425227556 EEDNSRNVFF 10 Unmodified _EEDNSRNVFF_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MSMS UPN47_class_I_Rep_3 4 628.7808837890625 2 628.780741 1255.54693 0.40721 0.00025605 -0.059435 -3.7372E-05 0.34777 0.00021867 628.7806440261076 48.4 0.74554 51.636 51.301 52.046 3.236 61 37 2 0 0 0 0.43106 1 10541 10541 17.113 1.2657 1 170050 4865 4236 3090 3094 6174 6174 -0.07062159609631635 EEDQSKSY 8 Unmodified _EEDQSKSY_ 0 0 0 ENSG00000157856|ENST00000288710|DRC1 ENSG00000157856|ENST00000288710|DRC1 ENSG00000157856|ENST00000288710|DRC1 MSMS UPN47_class_I_Rep_1 2 493.20916748046875 2 493.209086 984.40362 NaN NaN NaN NaN NaN NaN NaN 115.6 1 119.19 118.69 119.69 3.5943 0 0 0 0.40753 1 28606 28606 0.6015 0 1 4866 3781 3091 3095 6175 6175 -0.08920586720705614 EEDRAGPLKD 10 Unmodified _EEDRAGPLKD_ 0 0 0 REV__ENSG00000037965|ENST00000040584|HOXC8 REV__ENSG00000037965|ENST00000040584|HOXC8 MSMS UPN48_class_I_Rep_1 5 565.2789916992188 2 565.277835 1128.54112 NaN NaN NaN NaN NaN NaN NaN 23.903 1 27.469 26.969 27.969 3.5655 0 0 0 0.53105 1 2562 2562 1.1933 0.12188 1 + 4867 17639 3092 3096 6176 6176 -0.01801258121281535 EEEAARLF 8 Unmodified _EEEAARLF_ 0 0 0 nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000071575|ENST00000155926|TRIB2;ENSG00000173334|ENST00000311922|TRIB1 nc|ENSG00000173334|Q96RU8-2|TRIB1 nc|ENSG00000173334|Q96RU8-2|TRIB1 MSMS UPN46_class_I_Rep_3 1 482.74090576171875 2 482.740357 963.46616 NaN NaN NaN NaN NaN NaN NaN 47.561 1 47.561 47.061 48.061 0 0 0 0 0.37214 1 9845 9845 16.942 10.588 1 4868 1090 3093 3097 6177 6177 -0.0170339586186401 EEEAGPRL 8 Unmodified _EEEAGPRL_ 0 0 0 REV__ENST00000551766.5_1_16:22448505-22448907:-|nuORF REV__ENST00000551766.5_1_16:22448505-22448907:-|nuORF MSMS UPN48_class_I_Rep_1 5 450.771728515625 2 450.724707 899.43486 NaN NaN NaN NaN NaN NaN NaN 118.32 1 121.94 121.44 122.44 3.6189 0 0 0 0.40746 1 28856 28856 0.69038 0 1 + 4869 22963 3094 3098 6178 6178 -0.01887968895960057 EEEDALRY 8 Unmodified _EEEDALRY_ 0 0 0 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MSMS UPN47_class_I_Rep_1 2 513.2345581054688 2 512.732729 1023.4509 0.11885 6.0938E-05 0.25504 0.00013077 0.37389 0.00019171 512.7325507821691 50.524 0.55858 54.153 53.905 54.464 3.6285 34 24 2 0 0 0 0.82752 1 11151 11151 4.756 0.42677 1 89637 + 4870 21311 3095 3099 6179 6179 -0.05988307449717922 EEEEAAPDVI 10 Unmodified _EEEEAAPDVI_ 0 0 0 ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1 ENSG00000196132|ENST00000328439|MYT1 ENSG00000196132|ENST00000328439|MYT1 MULTI-MSMS UPN47_class_I_Rep_1 2 551.252197265625 2 551.250951 1100.48735 0.40778 0.00022479 0.73066 0.00040278 1.1384 0.00062757 551.2514081202208 63.561 0.46268 66.92 66.744 67.206 3.3595 55 39 2 0 0 0 0.48573 1 15048 15048 13.042 5.1323 1 73142 4871 5282 3096 3100 6180 6180 -0.05887475343661208 EEEEAAPDVI 10 Unmodified _EEEEAAPDVI_ 0 0 0 ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1 ENSG00000196132|ENST00000328439|MYT1 ENSG00000196132|ENST00000328439|MYT1 MULTI-MSMS UPN47_class_I_Rep_2 3 551.2515869140625 2 551.250951 1100.48735 0.3982 0.00021951 0.75361 0.00041543 1.1518 0.00063494 551.2513340161051 63.843 0.41043 67.099 66.818 67.228 3.2556 60 37 2 0 0 0 0.52562 2 15153 15153;15162 8.7454 3.0136 1 62392 4872 5282 3096 3100 6181;6182 6181 -0.05887475343661208 EEEEDDDDDD 10 Unmodified _EEEEDDDDDD_ 0 0 0 ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3;nc|ENSG00000163380|Q0VAK6-2|LMOD3;nc|ENSG00000290292|Q8IX15|HOMEZ;nc|ENSG00000290292|Q8IX15-3|HOMEZ;ENSG00000163380|ENST00000420581|LMOD3;ENSG00000148468|ENST00000378116|FAM171A1;nc|ENSG00000139718|Q9UPS6-2|SETD1B ENSG00000143061|ENST00000369486|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 MSMS UPN47_class_I_Rep_1 2 612.7847290039062 2 613.178574 1224.3426 NaN NaN NaN NaN NaN NaN NaN 49.743 1 53.402 52.902 53.902 3.6592 0 0 0 0.53105 1 10847 10847 0.40072 0 1 4873 3272 3097 3101 6183 6183 -0.26060233072121264 EEEEDYFDK 9 Unmodified _EEEEDYFDK_ 0 0 0 ENST00000433596.1_1_2:43908485-43908692:-|nuORF;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 ENST00000433596.1_1_2:43908485-43908692:-|nuORF ENST00000433596.1_1_2:43908485-43908692:-|nuORF MSMS UPN48_class_I_Rep_1 5 602.23828125 2 602.238041 1202.46153 NaN NaN NaN NaN NaN NaN NaN 119.94 1 123.56 123.06 124.06 3.6189 0 0 0 0.40098 1 29284 29284 0.45834 0 1 4874 1673 3098 3102 6184 6184 -0.13160369585943954 EEEEEAKTKEK 11 Unmodified _EEEEEAKTKEK_ 0 0 0 REV__ENST00000589123.5_2_19:3462863-3463967:+|nuORF REV__ENST00000589123.5_2_19:3462863-3463967:+|nuORF MSMS UPN46_class_I_Rep_3 1 450.70648193359375 3 450.552545 1348.6358 NaN NaN NaN NaN NaN NaN NaN 53.352 1 53.352 52.852 53.852 0 0 0 0 0.38417 1 11474 11474 0.40827 0.17242 1 + 4875 23155 3099 3103 6185 6185 -0.024567891606238845 EEEEEDPF 8 Unmodified _EEEEEDPF_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-2|LARS1 REV__nc|ENSG00000133706|Q9P2J5-2|LARS1 MSMS UPN46_class_I_Rep_3 1 512.1914672851562 2 512.193102 1022.37165 NaN NaN NaN NaN NaN NaN NaN 46.817 1 46.817 46.317 47.317 0 0 0 0 0.40581 1 9628 9628 2.8892 0 1 + 4876 19066 3100 3104 6186 6186 -0.1386399919450696 EEEEEQQH 8 Unmodified _EEEEEQQH_ 0 0 0 TCF20|p.Q1772H|1|0.19|ENSG00000100207|chr22:42209990-42209990|C/A|missense_variant TCF20|p.Q1772H|1|0.19|ENSG00000100207|chr22:42209990-42209990|C/A|missense_variant TCF20|p.Q1772H|1|0.19|ENSG00000100207|chr22:42209990-42209990|C/A|missense_variant MSMS UPN47_class_I_Rep_1 2 529.2070922851562 2 529.207075 1056.3996 NaN NaN NaN NaN NaN NaN NaN 99.795 1 103.59 103.09 104.09 3.7942 0 0 0 0.40604 1 24672 24672 2.5775 0 1 4877 32856 3101 3105 6187 6187 -0.12634676214406682 EEEEEQQH 8 Unmodified _EEEEEQQH_ 0 0 0 TCF20|p.Q1772H|1|0.19|ENSG00000100207|chr22:42209990-42209990|C/A|missense_variant TCF20|p.Q1772H|1|0.19|ENSG00000100207|chr22:42209990-42209990|C/A|missense_variant TCF20|p.Q1772H|1|0.19|ENSG00000100207|chr22:42209990-42209990|C/A|missense_variant MSMS UPN47_class_I_Rep_3 4 529.2077026367188 2 529.207075 1056.3996 NaN NaN NaN NaN NaN NaN NaN 100.11 1 103.55 103.05 104.05 3.4483 0 0 0 0.40604 1 24741 24741 2.5775 0 1 4878 32856 3101 3105 6188 6188 -0.12634676214406682 EEEEGYDDDD 10 Unmodified _EEEEGYDDDD_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MSMS UPN46_class_I_Rep_3 1 405.79766845703125 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 112.24 1 112.24 111.74 112.74 0 0 0 0 0.53105 1 27707 27707 0.69767 0.42865 1 4879 2487 3102 3106 6189 6189 -0.22511034967214982 EEEEGYDDDD 10 Unmodified _EEEEGYDDDD_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MSMS UPN46_class_I_Rep_3 1 405.79803466796875 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 114.37 1 114.37 113.87 114.87 0 0 0 0 0.53105 1 28265 28265 0.13989 0 1 4880 2487 3102 3106 6190 6190 -0.22511034967214982 EEEEGYDDDD 10 Unmodified _EEEEGYDDDD_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MSMS UPN46_class_I_Rep_3 1 405.79791259765625 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 115.49 1 115.49 114.99 115.99 0 0 0 0 0.53105 1 28565 28565 0.69767 0.49081 1 4881 2487 3102 3106 6191 6191 -0.22511034967214982 EEEIKKHG 8 Unmodified _EEEIKKHG_ 0 0 0 ENSG00000183206|ENST00000358970|POTEC;ENSG00000278522|ENST00000611217|POTEB3;nc|ENSG00000278522|A0JP26-3|POTEB3;ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2;ENSG00000166351|ENST00000299443|POTED ENSG00000183206|ENST00000358970|POTEC ENSG00000183206|ENST00000358970|POTEC MSMS UPN46_class_I_Rep_3 1 485.2545166015625 2 485.253631 968.49271 NaN NaN NaN NaN NaN NaN NaN 100.16 1 100.16 99.659 100.66 0 0 0 0 0.40746 1 24413 24413 0.69038 0 1 4882 4988 3103 3107 6192 6192 0.0072029302948521945 EEEKKGYL 8 Unmodified _EEEKKGYL_ 0 0 0 REV__ENST00000373886.7_1_10:60588703-60588985:+|nuORF REV__ENST00000373886.7_1_10:60588703-60588985:+|nuORF MSMS UPN48_class_I_Rep_1 5 498.25665283203125 2 498.25584 994.497126 NaN NaN NaN NaN NaN NaN NaN 31.762 1 35.296 34.796 35.796 3.5342 0 0 0 0.40604 1 4739 4739 2.5775 0 1 + 4883 21993 3104 3108 6193 6193 -0.0003424254761057455 EEEKNFKAF 9 Unmodified _EEEKNFKAF_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 571.2799072265625 2 571.279846 1140.54514 -0.083817 -4.7883E-05 0.35225 0.00020123 0.26843 0.00015335 571.2800578035378 29.797 0.71298 33.555 33.223 33.936 3.7578 111 51 3 0 0 0 0.21527 2 4784 4745;4784 19.257 6.2145 1 139650 4884 4308 3105 3109 6194;6195 6195 -0.019511686275791362 EEEKNFKAF 9 Unmodified _EEEKNFKAF_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 571.27978515625 2 571.279846 1140.54514 0.046409 2.6512E-05 0.16755 9.5719E-05 0.21396 0.00012223 571.2798253049491 29.891 0.70111 33.384 33.129 33.831 3.4923 136 59 3 0 0 0 0.17897 4 4839 4797;4839;4876;4914 22.736 9.6938 1 114040 4885 4308 3105 3109 6196;6197;6198;6199 6197 -0.019511686275791362 EEEKNFKAF 9 Unmodified _EEEKNFKAF_ 0 0 0 ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13 ENST00000570149.1_1_16:89628679-89629447:+|nuORF ENST00000570149.1_1_16:89628679-89629447:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 571.2799072265625 2 571.279846 1140.54514 -0.18252 -0.00010427 0.39438 0.0002253 0.21187 0.00012104 571.2800896204051 30.121 0.7796 33.433 33.158 33.937 3.3116 141 63 3 0 0 0 0.1249 3 4975 4975;5012;5051 29.082 10.947 1 141480 4886 4308 3105 3109 6200;6201;6202 6200 -0.019511686275791362 EEELPILLLC 10 Unmodified _EEELPILLLC_ 0 0 0 REV__ENSG00000214575|ENST00000684509|CPEB1 REV__ENSG00000214575|ENST00000684509|CPEB1 MSMS UPN48_class_I_Rep_2 6 586.3177490234375 2 586.317583 1170.62061 NaN NaN NaN NaN NaN NaN NaN 23.815 1 27.455 26.955 27.955 3.6397 0 0 0 0.53105 1 2660 2660 0 0 1 + 4887 21263 3106 3110 6203 6203 0.04212672508538162 EEELWLQRR 9 Unmodified _EEELWLQRR_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MSMS UPN48_class_I_Rep_3 7 629.83154296875 2 629.830569 1257.64658 NaN NaN NaN NaN NaN NaN NaN 18.928 1 22.515 22.015 23.015 3.5874 0 0 0 0.4007 1 1337 1337 0.52476 0 1 + 4888 19136 3107 3111 6204 6204 0.02806702794987359 EEESCRERV 9 Unmodified _EEESCRERV_ 0 0 0 MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|19|3|sense MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|19|3|sense MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 568.7054443359375 2 568.753669 1135.49279 NaN NaN NaN NaN NaN NaN NaN 23.314 1 27.018 26.518 27.518 3.7042 0 0 0 0.39428 1 2862 2862 2.0598 0 1 4889 16263 3108 3112 6205 6205 -0.06954075032831497 EEEYSCFSF 9 Unmodified _EEEYSCFSF_ 0 0 0 nc|ENSG00000110911|P49281-5|SLC11A2;ENSG00000110911|ENST00000262052|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2;nc|ENSG00000110911|P49281-3|SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2 nc|ENSG00000110911|P49281-5|SLC11A2 nc|ENSG00000110911|P49281-5|SLC11A2 MSMS UPN47_class_I_Rep_1 2 570.7130126953125 2 570.713147 1139.41174 NaN NaN NaN NaN NaN NaN NaN 48.54 1 52.221 51.721 52.721 3.6819 0 0 0 0.39428 1 10480 10480 2.0598 1.2661 1 4890 1957 3109 3113 6206 6206 -0.1523877579559212 EEFDLFMRM 9 2 Oxidation (M) _EEFDLFM(Oxidation (M))RM(Oxidation (M))_ EEFDLFM(1)RM(1) EEFDLFM(73)RM(73) 0 0 2 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4 MULTI-MSMS UPN46_class_I_Rep_3 1 625.2647705078125 2 625.265024 1248.5155 0.61471 0.00038436 -0.43638 -0.00027285 0.17833 0.0001115 625.2647601106661 63.432 0.50356 63.432 63.2 63.704 0 114 58 3 0 0 0 0.006828 4 14236 14233;14236;14268;14302 72.968 59.062 1 579960 4891 2570;1202 3110 3114 6207;6208;6209;6210 6208 34;35 -0.09882191959582087 EEFDRFTGY 9 Unmodified _EEFDRFTGY_ 0 0 0 ENST00000597145.5_1_19:4685559-4714096:-|nuORF;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9 ENST00000597145.5_1_19:4685559-4714096:-|nuORF ENST00000597145.5_1_19:4685559-4714096:-|nuORF MSMS UPN47_class_I_Rep_2 3 582.25341796875 2 582.253828 1162.4931 NaN NaN NaN NaN NaN NaN NaN 50.795 1 54.133 53.633 54.633 3.3386 0 0 0 0.28335 1 11196 11196 11.64 0.81637 1 4892 7647 3111 3115 6211 6211 -0.0816433204133773 EEFEKLYASY 10 Unmodified _EEFEKLYASY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS UPN47_class_I_Rep_1 2 639.7988891601562 2 639.798069 1277.58158 0.40765 0.00026081 0.043317 2.7714E-05 0.45097 0.00028853 639.7981471477691 54.754 0.58278 58.256 57.97 58.553 3.5014 73 35 3 0 0 0 0.36548 2 12326 12326;12365 22.658 10.417 1 116160 4893 4299 3112 3116 6212;6213 6212 -0.04610336521500358 EEFEKLYASY 10 Unmodified _EEFEKLYASY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS UPN47_class_I_Rep_2 3 639.7994384765625 2 639.798069 1277.58158 0.51726 0.00033094 -0.14224 -9.1002E-05 0.37502 0.00023994 639.7979772329248 54.955 0.46043 58.265 58.016 58.476 3.3102 44 26 2 0 0 0 0.41414 3 12448 12425;12448;12492 18.373 6.1324 1 95355 4894 4299 3112 3116 6214;6215;6216 6215 -0.04610336521500358 EEFEKLYASY 10 Unmodified _EEFEKLYASY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS UPN47_class_I_Rep_3 4 639.7994995117188 2 639.798069 1277.58158 0.44241 0.00028305 -0.038428 -2.4586E-05 0.40398 0.00025847 639.7980530657529 55.198 0.62827 58.376 58.019 58.647 3.1779 63 37 2 0 0 0 0.25045 3 12562 12541;12562;12607 38.615 10.986 1 78447 4895 4299 3112 3116 6217;6218;6219 6218 -0.04610336521500358 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN46_class_I_Rep_3 1 599.802734375 2 599.803154 1197.59175 0.52912 0.00031737 -0.60787 -0.0003646 -0.078754 -4.7237E-05 599.8029938375923 67.804 0.057137 67.804 67.771 67.828 0 6 3 2 0 0 0 0.43106 1 15455 15455 17.113 4.0704 1 95004 4896 5036 3113 3117 6220 6220 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN46_class_I_Rep_3 1 599.8040771484375 2 599.803154 1197.59175 NaN NaN NaN NaN NaN NaN NaN 67.313 1 67.313 66.813 67.813 0 0 0 0 0.53105 1 15318 15318 55.503 31.482 1 4897 5036 3113 3117 6221 6221 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN46_class_I_Rep_3 1 599.802978515625 2 599.803154 1197.59175 NaN NaN NaN NaN NaN NaN NaN 67.408 1 67.408 66.908 67.908 0 0 0 0 1.8047E-19 1 15346 15346 100.09 63.016 1 4898 5036 3113 3117 6222 6222 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN46_class_I_Rep_3 1 599.802490234375 2 599.803154 1197.59175 NaN NaN NaN NaN NaN NaN NaN 67.54 1 67.54 67.04 68.04 0 0 0 0 3.2926E-28 1 15379 15379 107.1 70.025 1 4899 5036 3113 3117 6223 6223 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN46_class_I_Rep_3 1 599.8027954101562 2 599.803154 1197.59175 NaN NaN NaN NaN NaN NaN NaN 67.676 1 67.676 67.176 68.176 0 0 0 0 0.43689 1 15415 15415 63.961 36.332 1 4900 5036 3113 3117 6224 6224 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_1 2 599.8035278320312 2 599.803154 1197.59175 0.41064 0.0002463 0.20967 0.00012576 0.62031 0.00037206 599.8032267625566 62.059 1.0207 65.427 65.022 66.043 3.3681 202 69 4 0 0 0 1.2193E-06 5 14559 14480;14520;14559;14599;14733 148.27 118.43 1 1168500 4901 5036 3113 3117 6225;6226;6227;6228;6229 6227 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_2 3 599.8034057617188 2 599.803154 1197.59175 0.44352 0.00026602 0.20339 0.00012199 0.64691 0.00038802 599.8032448647224 62.262 1.1789 65.522 65.121 66.3 3.2594 193 72 4 0 0 0 1.3323E-06 5 14686 14587;14608;14648;14686;14727 136.39 106.55 1 1243800 4902 5036 3113 3117 6230;6231;6232;6233;6234 6233 0.0008627120373603248 EEFELLGKAY 10 Unmodified _EEFELLGKAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_3 4 599.8037109375 2 599.803154 1197.59175 0.40646 0.0002438 0.20469 0.00012277 0.61115 0.00036657 599.803273083125 62.277 1.2066 65.444 65.099 66.305 3.1667 183 64 4 0 0 0 2.1272E-06 6 14792 14669;14709;14749;14792;14833;14914 117.76 92.77 1 1002000 4903 5036 3113 3117 6235;6236;6237;6238;6239;6240 6238 0.0008627120373603248 EEFETIERF 9 Unmodified _EEFETIERF_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MSMS UPN46_class_I_Rep_3 1 600.2841186523438 2 600.282586 1198.55062 NaN NaN NaN NaN NaN NaN NaN 60.119 1 60.119 59.619 60.619 0 0 0 0 0.11743 1 13323 13323 21.59 11.516 1 4904 3652 3114 3118 6241 6241 -0.040714898357464335 EEFETIERF 9 Unmodified _EEFETIERF_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MSMS UPN46_class_I_Rep_3 1 600.2839965820312 2 600.282586 1198.55062 NaN NaN NaN NaN NaN NaN NaN 60.322 1 60.322 59.822 60.822 0 0 0 0 0.35904 1 13376 13376 7.609 0.88579 1 4905 3652 3114 3118 6242 6242 -0.040714898357464335 EEFGDVRLF 9 Unmodified _EEFGDVRLF_ 0 0 0 ENSG00000257108|ENST00000424439|NHLRC4 ENSG00000257108|ENST00000424439|NHLRC4 ENSG00000257108|ENST00000424439|NHLRC4 MSMS UPN47_class_I_Rep_2 3 556.2743530273438 2 556.274564 1110.53457 NaN NaN NaN NaN NaN NaN NaN 67.666 1 70.929 70.429 71.429 3.2636 0 0 0 0.37891 1 16332 16332 5.7319 2.4505 1 4906 5768 3115 3119 6243 6243 -0.016271512820139833 EEFGDVRLF 9 Unmodified _EEFGDVRLF_ 0 0 0 ENSG00000257108|ENST00000424439|NHLRC4 ENSG00000257108|ENST00000424439|NHLRC4 ENSG00000257108|ENST00000424439|NHLRC4 MSMS UPN47_class_I_Rep_3 4 556.274169921875 2 556.274564 1110.53457 NaN NaN NaN NaN NaN NaN NaN 67.767 1 70.958 70.458 71.458 3.1914 0 0 0 0.38784 1 16427 16427 3.5965 0.60125 1 4907 5768 3115 3119 6244 6244 -0.016271512820139833 EEFGQAFSF 9 Unmodified _EEFGQAFSF_ 0 0 0 ENST00000479107.1_1_6:33037343-33041347:-|nuORF;ENSG00000231389|ENST00000419277|HLA-DPA1 ENST00000479107.1_1_6:33037343-33041347:-|nuORF ENST00000479107.1_1_6:33037343-33041347:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 531.2325439453125 2 531.232364 1060.45018 0.31707 0.00016844 0.092244 4.9003E-05 0.40932 0.00021744 531.23230745758 79.025 0.79414 79.025 78.757 79.551 0 239 78 4 0 0 0 0.00027817 6 18553 18482;18516;18553;18588;18626;18665 165.72 104.36 1 1249400 4908 5677 3116 3120 6245;6246;6247;6248;6249;6250 6247 -0.0776310209876101 EEFGQLYGY 9 Unmodified _EEFGQLYGY_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW;chr11:65880286-65882175|64|29.45|0.23|6.99|+|2|CTSW,CTSW|1 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MULTI-MSMS UPN46_class_I_Rep_3 1 553.2455444335938 2 553.245472 1104.47639 0.36128 0.00019988 0.27738 0.00015346 0.63866 0.00035333 553.2454968762584 69.094 0.54587 69.094 68.823 69.369 0 98 56 2 0 0 0 0.047711 2 15818 15818;15856 49.933 30.494 1 215840 4909 4582 3117 3121 6251;6252 6251 -0.07166832927259748 EEFGQLYGY 9 Unmodified _EEFGQLYGY_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW;chr11:65880286-65882175|64|29.45|0.23|6.99|+|2|CTSW,CTSW|1 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MSMS UPN47_class_I_Rep_1 2 553.24609375 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 65.022 1 68.378 67.878 68.878 3.3557 0 0 0 0.11827 1 15481 15481 21.537 9.8967 1 4910 4582 3117 3121 6253 6253 -0.07166832927259748 EEFGQLYGY 9 Unmodified _EEFGQLYGY_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW;chr11:65880286-65882175|64|29.45|0.23|6.99|+|2|CTSW,CTSW|1 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MSMS UPN47_class_I_Rep_1 2 553.2442626953125 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 65.147 1 68.502 68.002 69.002 3.3557 0 0 0 0.18866 1 15519 15519 17.113 5.4726 1 4911 4582 3117 3121 6254 6254 -0.07166832927259748 EEFGQLYGY 9 Unmodified _EEFGQLYGY_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW;chr11:65880286-65882175|64|29.45|0.23|6.99|+|2|CTSW,CTSW|1 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MSMS UPN47_class_I_Rep_2 3 553.24560546875 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 65.235 1 68.491 67.991 68.991 3.2556 0 0 0 0.18866 1 15595 15595 17.113 5.4726 1 4912 4582 3117 3121 6255 6255 -0.07166832927259748 EEFGQLYGY 9 Unmodified _EEFGQLYGY_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW;chr11:65880286-65882175|64|29.45|0.23|6.99|+|2|CTSW,CTSW|1 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MSMS UPN47_class_I_Rep_2 3 553.2448120117188 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 65.376 1 68.632 68.132 69.132 3.2556 0 0 0 0.18866 1 15637 15637 17.113 5.4726 1 4913 4582 3117 3121 6256 6256 -0.07166832927259748 EEFGQLYGY 9 Unmodified _EEFGQLYGY_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW;chr11:65880286-65882175|64|29.45|0.23|6.99|+|2|CTSW,CTSW|1 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MSMS UPN47_class_I_Rep_3 4 553.2462158203125 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 65.312 1 68.491 67.991 68.991 3.1795 0 0 0 0.18866 1 15678 15678 17.113 5.4726 1 4914 4582 3117 3121 6257 6257 -0.07166832927259748 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS UPN47_class_I_Rep_1 2 545.2540893554688 2 545.253631 1088.49271 0.43784 0.00023873 -0.060357 -3.291E-05 0.37748 0.00020582 545.2539160223702 58.159 2.0038 61.596 61.096 63.1 3.437 494 133 5 0 0 0 0.00027817 9 13479 13353;13396;13436;13479;13516;13554;13591;13634;13673 165.72 165.72 1 15904000 4915 5512 3118 3122 6258;6259;6260;6261;6262;6263;6264;6265;6266 6261 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS UPN47_class_I_Rep_1 2 545.25390625 2 545.253631 1088.49271 0.45883 0.00025018 0.095779 5.2224E-05 0.55461 0.0003024 545.2537889603219 60.121 2.9874 63.52 62.879 65.866 3.3982 533 229 6 0 0 0 0.0069776 1 13990 13990 118.07 53.832 1 3870100 4916 5512 3118 3122 6267 6267 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS UPN47_class_I_Rep_2 3 545.2540893554688 2 545.253631 1088.49271 0.48955 0.00026693 -0.15618 -8.5158E-05 0.33337 0.00018177 545.2538248018366 58.453 1.9147 61.735 61.171 63.086 3.2818 463 123 5 0 0 0 0.00027817 8 13483 13443;13483;13529;13568;13611;13658;13694;13733 173.69 173.69 1 13705000 4917 5512 3118 3122 6268;6269;6270;6271;6272;6273;6274;6275 6269 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS UPN47_class_I_Rep_2 3 545.2540283203125 2 545.253631 1088.49271 0.45428 0.0002477 0.4257 0.00023212 0.87998 0.00047981 545.2539121598683 60.385 2.2608 63.651 63.013 65.273 3.2654 470 165 5 0 0 0 0.0069776 1 14127 14127 118.07 53.832 1 4583300 4918 5512 3118 3122 6276 6276 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS UPN47_class_I_Rep_3 4 545.2540283203125 2 545.253631 1088.49271 0.32811 0.0001789 0.01923 1.0485E-05 0.34734 0.00018939 545.2539429719085 58.54 1.9424 61.705 61.202 63.145 3.1658 479 126 5 0 0 0 0.0010613 8 13691 13526;13568;13605;13648;13691;13731;13777;13823 187.3 152.89 1 14022000 4919 5512 3118 3122 6277;6278;6279;6280;6281;6282;6283;6284 6281 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-SECPEP UPN48_class_I_Rep_1 5 544.623046875 2 545.253631 1088.49271 0.55227 0.00030113 -0.047811 -2.6069E-05 0.50446 0.00027506 545.253465322204 58.386 0.68365 61.873 61.582 62.265 3.487 85 39 3 0 0 0 0.10629 1 12713 12713 12.241 8.2963 1 248140 4920 5512 3118 3122 6285 6285 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-SECPEP UPN48_class_I_Rep_2 6 544.6232299804688 2 545.253631 1088.49271 0.57741 0.00031484 -0.11174 -6.0929E-05 0.46567 0.00025391 545.253474781714 58.381 0.77765 61.88 61.519 62.296 3.4987 77 44 2 0 0 0 0.11642 1 12746 12746 12.241 4.3305 1 251580 4921 5512 3118 3122 6286 6286 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS UPN48_class_I_Rep_3 7 545.2540283203125 2 545.253631 1088.49271 0.42124 0.00022968 0.19807 0.000108 0.61931 0.00033768 545.2536256848258 58.209 0.64558 61.74 61.442 62.088 3.5317 99 41 4 0 0 0 0.19147 1 12645 12645 21.537 4.5947 1 363110 4922 5512 3118 3122 6287 6287 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MATCH UPN48_class_I_Rep_1 5 2 545.253631 1088.49271 0.58963 0.0003215 -0.29845 -0.00016273 0.29118 0.00015877 545.253488059737 60.347 0.51496 63.82 63.532 64.047 3.4737 0.12777 -0.00045248 NaN 118.07 55 35 2 NaN NaN NaN NaN 0 NaN NaN 0 223710 4923 5512 3118 3122 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MATCH UPN48_class_I_Rep_2 6 2 545.253631 1088.49271 0.55682 0.00030361 -0.059482 -3.2433E-05 0.49734 0.00027118 545.2535339768515 60.288 0.49297 63.767 63.486 63.979 3.4785 0.07413 -0.00019189 NaN 118.07 88 41 3 NaN NaN NaN NaN 0 NaN NaN 0 197250 4924 5512 3118 3122 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 545.253631 1088.49271 0.42124 0.00022968 0.19807 0.000108 0.61931 0.00033768 545.2536256848258 58.209 0.64558 61.74 61.442 62.088 3.5317 -0.014445 0.00022163 NaN 165.72 99 41 4 NaN NaN NaN NaN 0 NaN NaN 0 363110 4925 5512 3118 3122 -0.047997069705161266 EEFGRFASF 9 Unmodified _EEFGRFASF_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MATCH UPN48_class_I_Rep_3 7 2 545.253631 1088.49271 0.46565 0.0002539 -0.23226 -0.00012664 0.23339 0.00012726 545.2535690702479 60.188 0.68627 63.705 63.333 64.019 3.5169 0.012853 -0.00038031 NaN 118.07 95 58 2 NaN NaN NaN NaN 0 NaN NaN 0 176790 4926 5512 3118 3122 -0.047997069705161266 EEFKITSF 8 Unmodified _EEFKITSF_ 0 0 0 ENSG00000088854.12,C20orf194,chr20,-,I8.1,3343732,3348524|77|11.19|1|intron;ENSG00000088854.12,C20orf194,chr20,-,I8.1,3343732,3348524|77|11.19|2|intron;ENSG00000088854.12,C20orf194,chr20,-,I8.1,3343732,3348524|77|11.19|3|intron;ENSG00000088854.12,C20orf194,chr20,-,I13.1,3324969,3326196|61|10.37|1|intron;ENSG00000088854.12,C20orf194,chr20,-,I13.1,3324969,3326196|61|10.37|4|intron;ENSG00000088854.12,C20orf194,chr20,-,I29.1,3270563,3278911|43|8.34|1|intron;ENSG00000088854|ENST00000252032|DNAAF9 ENSG00000088854.12,C20orf194,chr20,-,I8.1,3343732,3348524|77|11.19|1|intron ENSG00000088854.12,C20orf194,chr20,-,I8.1,3343732,3348524|77|11.19|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 500.7529602050781 2 500.752933 999.491313 0.23942 0.00011989 -0.34993 -0.00017523 -0.11051 -5.534E-05 500.7526378487475 61.994 0.43215 61.994 61.793 62.225 0 65 40 2 0 0 0 0.82752 2 13805 13805;13847 19.257 6.7254 1 215070 4927 1320 3119 3123 6288;6289 6288 -0.008453410592892396 EEFKKDLAL 9 Unmodified _EEFKKDLAL_ 0 0 0 L1M4c_dup1128|chr6:2321269-2322974:-|2.0870060713026297|0.0368520679038496|5.82|151.0|81|1|anti-sense L1M4c_dup1128|chr6:2321269-2322974:-|2.0870060713026297|0.0368520679038496|5.82|151.0|81|1|anti-sense L1M4c_dup1128|chr6:2321269-2322974:-|2.0870060713026297|0.0368520679038496|5.82|151.0|81|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.8011474609375 2 546.800414 1091.58628 0.35613 0.00019473 0.23285 0.00012732 0.58898 0.00032206 546.8002287693665 56.089 0.71542 59.644 59.338 60.054 3.5554 123 59 3 0 0 0 0.37599 1 12007 12007 9.3831 9.3831 1 405750 4928 9031 3120 3124 6290 6290 0.04414592411899321 EEFLFRTAL 9 Unmodified _EEFLFRTAL_ 0 0 0 nc|ENSG00000132405|Q9P2M4-2|TBC1D14;ENSG00000132405|ENST00000409757|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MULTI-MSMS UPN46_class_I_Rep_3 1 563.3004150390625 2 563.300581 1124.58661 0.41029 0.00023112 -0.064463 -3.6312E-05 0.34583 0.00019481 563.3006598573244 73.062 0.48994 73.062 72.877 73.367 0 75 51 2 0 0 0 0.053261 2 16955 16917;16955 47.594 31.747 1 268800 4929 2752 3121 3125 6291;6292 6292 0.029300121317419325 EEFPDLTMF 9 Oxidation (M) _EEFPDLTM(Oxidation (M))F_ EEFPDLTM(1)F EEFPDLTM(64)F 0 0 1 nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT nc|ENSG00000143437|P27540-2|ARNT nc|ENSG00000143437|P27540-2|ARNT MSMS UPN46_class_I_Rep_3 1 572.7471313476562 2 572.74699 1143.47943 NaN NaN NaN NaN NaN NaN NaN 83.657 1 83.657 83.157 84.157 0 0 0 0 0.00053226 1 19880 19880 64.236 28.192 1 4930 3299 3122 3126 6293 6293 102 -0.08657325864783161 EEFQIHVF 8 Unmodified _EEFQIHVF_ 0 0 0 nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L MSMS UPN46_class_I_Rep_3 1 524.7589721679688 2 524.758549 1047.50255 NaN NaN NaN NaN NaN NaN NaN 69.648 1 69.648 69.148 70.148 0 0 0 0 0.38221 1 15972 15972 14.582 4.3983 1 4931 3610 3123 3127 6294 6294 -0.019305189651277033 EEFQIHVF 8 Unmodified _EEFQIHVF_ 0 0 0 nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L MSMS UPN46_class_I_Rep_3 1 524.7586059570312 2 524.758549 1047.50255 NaN NaN NaN NaN NaN NaN NaN 69.79 1 69.79 69.29 70.29 0 0 0 0 0.079038 1 16009 16009 50.855 6.448 1 4932 3610 3123 3127 6295 6295 -0.019305189651277033 EEFQIHVF 8 Unmodified _EEFQIHVF_ 0 0 0 nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-2|RABGAP1L MSMS UPN46_class_I_Rep_3 1 524.759033203125 2 524.758549 1047.50255 NaN NaN NaN NaN NaN NaN NaN 69.912 1 69.912 69.412 70.412 0 0 0 0 0.35537 1 16042 16042 20.871 5.103 1 4933 3610 3123 3127 6296 6296 -0.019305189651277033 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN46_class_I_Rep_3 1 547.73779296875 2 547.73748 1093.46041 0.34287 0.0001878 0.21409 0.00011727 0.55696 0.00030507 547.7374503340393 69.671 0.50623 69.671 69.473 69.98 0 70 51 2 0 0 0 0.0067818 3 15971 15971;16026;16033 85.272 52.967 1 200690 4934 3641 3124 3128 6297;6298;6299 6297 -0.0825853916419419 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN48_class_I_Rep_3 7 547.7377319335938 2 547.73748 1093.46041 0.48471 0.00026549 -0.2967 -0.00016251 0.18801 0.00010298 547.737323060762 65.388 0.26028 68.895 68.799 69.06 3.5077 26 18 2 0 0 0 0.21527 1 14786 14786 19.257 11.347 1 67361 4935 3641 3124 3128 6300 6300 -0.0825853916419419 EEFSYGYSL 9 Unmodified _EEFSYGYSL_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH UPN48_class_I_Rep_2 6 2 547.73748 1093.46041 0.51595 0.00028261 -0.47675 -0.00026113 0.039207 2.1475E-05 547.7373278624323 65.448 0.13784 68.927 68.842 68.98 3.4792 0.016057 -0.00010186 NaN 19.257 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 58972 4936 3641 3124 3128 -0.0825853916419419 EEFTVARL 8 Unmodified _EEFTVARL_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B;ENSG00000155980|ENST00000455537|KIF5A ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MSMS UPN46_class_I_Rep_3 1 482.7952880859375 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 54.975 1 54.975 54.475 55.475 0 0 0 0 0.40157 1 11932 11932 7.2892 2.5332 1 4937 3718 3125 3129 6301 6301 0.01933481034848228 EEFWRWIV 8 Unmodified _EEFWRWIV_ 0 0 0 L1MB3_dup2043|chr2:99471321-99472544:+|1.2223331368691783|0.1065160830934384|3.52|151.0|46|3|sense L1MB3_dup2043|chr2:99471321-99472544:+|1.2223331368691783|0.1065160830934384|3.52|151.0|46|3|sense L1MB3_dup2043|chr2:99471321-99472544:+|1.2223331368691783|0.1065160830934384|3.52|151.0|46|3|sense MSMS UPN47_class_I_Rep_2 3 582.79638671875 2 582.795466 1163.57638 NaN NaN NaN NaN NaN NaN NaN 56.215 1 59.516 59.016 60.016 3.3009 0 0 0 0.40604 1 12851 12851 2.5775 0.51773 1 4938 10396 3126 3130 6302 6302 0.001134491971697571 EEGAVDKSY 9 Unmodified _EEGAVDKSY_ 0 0 0 ENST00000432615.5_1_7:158447451-158457424:-|nuORF;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;NCAPG2|p.L1141*|1|0.22|ENSG00000146918|chr7:158631676-158631676|A/-|frameshift_variant;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF MSMS UPN47_class_I_Rep_1 2 499.2269287109375 2 499.227279 996.440005 NaN NaN NaN NaN NaN NaN NaN 19.414 1 23.026 22.526 23.526 3.6118 0 0 0 0.38784 1 1781 1781 3.5965 0.70727 1 4939 3452 3127 3131 6303 6303 -0.05835709823998059 EEGCDCEEGD 10 Unmodified _EEGCDCEEGD_ 0 0 0 REV__nc|ENSG00000135074|Q9H013|ADAM19 REV__nc|ENSG00000135074|Q9H013|ADAM19 MSMS UPN46_class_I_Rep_3 1 543.1554565429688 2 543.155336 1084.29612 NaN NaN NaN NaN NaN NaN NaN 77.522 1 77.522 77.022 78.022 0 0 0 0 0.53105 1 18125 18125 0 0 1 + 4940 19123 3128 3132 6304 6304 -0.24265667708732508 EEGDTFEE 8 Unmodified _EEGDTFEE_ 0 0 0 REV__ENSG00000100151|ENST00000356976|PICK1 REV__ENSG00000100151|ENST00000356976|PICK1 MULTI-SECPEP UPN46_class_I_Rep_3 1 478.7769775390625 2 478.179995 954.345436 0.17466 8.3519E-05 0.02717 1.2992E-05 0.20183 9.6511E-05 478.1815034085068 56.471 0.027428 56.471 56.456 56.483 0 4 2 2 0 0 0 0.72333 1 12322 12322 0.69038 0 1 76306 + 4941 18092 3129 3133 6305 6305 -0.1335626836598749 EEGFHGKKSEA 11 Unmodified _EEGFHGKKSEA_ 0 0 0 ENST00000533428.2_1_15:97300531-97301611:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1 ENST00000533428.2_1_15:97300531-97301611:+|nuORF ENST00000533428.2_1_15:97300531-97301611:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 609.7911987304688 2 609.791109 1217.56767 0.51775 0.00031572 -0.32648 -0.00019909 0.19127 0.00011664 609.7908680840968 55.586 0.70918 58.897 58.605 59.314 3.3102 69 40 2 0 0 0 0.52578 1 12665 12665 7.1017 0.37856 1 317630 4942 3077 3130 3134 6306 6306 -0.03241569229930974 EEGFHGKKSEA 11 Unmodified _EEGFHGKKSEA_ 0 0 0 ENST00000533428.2_1_15:97300531-97301611:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1 ENST00000533428.2_1_15:97300531-97301611:+|nuORF ENST00000533428.2_1_15:97300531-97301611:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 609.791109 1217.56767 0.37684 0.00022979 -0.10008 -6.1028E-05 0.27676 0.00016876 609.7909872525248 55.429 0.72623 58.907 58.568 59.294 3.4785 0.0025711 -2.3986E-05 NaN 7.1017 81 44 2 NaN NaN NaN NaN 0 NaN NaN 0 138300 4943 3077 3130 3134 -0.03241569229930974 EEGFHGKKSEA 11 Unmodified _EEGFHGKKSEA_ 0 0 0 ENST00000533428.2_1_15:97300531-97301611:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1 ENST00000533428.2_1_15:97300531-97301611:+|nuORF ENST00000533428.2_1_15:97300531-97301611:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 609.791109 1217.56767 0.51775 0.00031572 -0.32648 -0.00019909 0.19127 0.00011664 609.7908680840968 55.586 0.70918 58.897 58.605 59.314 3.3102 -0.0079146 -0.0003001 NaN 7.1017 69 40 2 NaN NaN NaN NaN 0 NaN NaN 0 317630 4944 3077 3130 3134 -0.03241569229930974 EEGFHGKKSEA 11 Unmodified _EEGFHGKKSEA_ 0 0 0 ENST00000533428.2_1_15:97300531-97301611:+|nuORF;nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1 ENST00000533428.2_1_15:97300531-97301611:+|nuORF ENST00000533428.2_1_15:97300531-97301611:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 609.791109 1217.56767 0.4205 0.00025642 0.11139 6.7924E-05 0.53189 0.00032434 609.7911080592462 55.732 0.79539 58.91 58.597 59.392 3.1779 0.0053434 0.00023392 NaN 7.1017 85 51 2 NaN NaN NaN NaN 0 NaN NaN 0 234300 4945 3077 3130 3134 -0.03241569229930974 EEGQMAPVTPW 11 Unmodified _EEGQMAPVTPW_ 0 0 0 MER21C_dup1561|chr4:168460629-168461366:-|1.8807952002106487|0.2336622188493471|3.01|151.0|33|1|anti-sense MER21C_dup1561|chr4:168460629-168461366:-|1.8807952002106487|0.2336622188493471|3.01|151.0|33|1|anti-sense MER21C_dup1561|chr4:168460629-168461366:-|1.8807952002106487|0.2336622188493471|3.01|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 622.7841186523438 2 622.784438 1243.55432 0.51561 0.00032111 -0.31465 -0.00019596 0.20096 0.00012516 622.7843043669955 52.17 0.53415 55.503 55.17 55.704 3.3332 53 34 2 0 0 0 0.63951 2 11636 11636;11674 4.1895 0.63015 1 198870 4946 15884 3131 3135 6307;6308 6307 -0.057711433335725815 EEHDDLLD 8 Unmodified _EEHDDLLD_ 0 0 0 REV__ENST00000449048.2_1_9:131207010-131207196:+|nuORF REV__ENST00000449048.2_1_9:131207010-131207196:+|nuORF MSMS UPN47_class_I_Rep_1 2 493.2090148925781 2 493.209086 984.40362 NaN NaN NaN NaN NaN NaN NaN 117.59 1 121.2 120.7 121.7 3.6036 0 0 0 0.40604 1 29158 29158 2.5775 1.0956 1 + 4947 22378 3132 3136 6309 6309 -0.08920586720716983 EEHDDLLD 8 Unmodified _EEHDDLLD_ 0 0 0 REV__ENST00000449048.2_1_9:131207010-131207196:+|nuORF REV__ENST00000449048.2_1_9:131207010-131207196:+|nuORF MSMS UPN48_class_I_Rep_3 7 493.2093505859375 2 493.209086 984.40362 NaN NaN NaN NaN NaN NaN NaN 115.51 1 119.16 118.66 119.66 3.6433 0 0 0 0.40625 1 27487 27487 2.3027 0.24298 1 + 4948 22378 3132 3136 6310 6310 -0.08920586720716983 EEHEATFGE 9 Unmodified _EEHEATFGE_ 0 0 0 ENSG00000198774|ENST00000361228|RASSF9 ENSG00000198774|ENST00000361228|RASSF9 ENSG00000198774|ENST00000361228|RASSF9 MSMS UPN47_class_I_Rep_2 3 524.7125244140625 2 524.714536 1047.41452 NaN NaN NaN NaN NaN NaN NaN 116.6 1 120.1 119.6 120.6 3.4965 0 0 0 0.39428 1 28474 28474 2.0598 0 1 4949 5458 3133 3137 6311 6311 -0.10729184346428156 EEHKFLLLMK 10 Unmodified _EEHKFLLLMK_ 0 0 0 L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 645.3637084960938 2 644.360116 1286.70568 0.43712 0.00028166 1.545 0.00099553 1.9821 0.0012772 644.3614646139465 104.79 0.20316 108.42 108.36 108.56 3.6247 60 29 3 0 0 0 0.56033 1 25277 25277 3.5965 0.60125 1 4669800 4950 11075 3134 3138 6312 6312 0.07379462764947675 EEHKFLLLMK 10 Unmodified _EEHKFLLLMK_ 0 0 0 L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 644.360116 1286.70568 0.58305 0.00037569 1.1359 0.0007319 1.7189 0.0011076 644.3617280721498 104.67 0.27031 108.43 108.4 108.67 3.7627 0.15246 -0.00031095 NaN 3.5965 127 39 5 NaN NaN NaN NaN 0 NaN NaN 0 63526000 4951 11075 3134 3138 0.07379462764947675 EEHKFLLLMK 10 Unmodified _EEHKFLLLMK_ 0 0 0 L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 644.360116 1286.70568 0.515 0.00033184 2.2458 0.0014471 2.7608 0.001779 644.3620389790239 104.7 0.08979 108.22 108.18 108.27 3.5205 -0.058769 0.0011195 NaN 3.5965 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 16746000 4952 11075 3134 3138 0.07379462764947675 EEHKFLLLMK 10 Unmodified _EEHKFLLLMK_ 0 0 0 L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense L1MC_dup8124|chr22:49878411-49878755:+|1.0105091003145987|0.0956325877001499|3.4|151.0|12|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 644.360116 1286.70568 0.64397 0.00041495 1.1085 0.00071428 1.7525 0.0011292 644.3613978780916 104.32 0.17422 108.04 108.02 108.19 3.7192 -0.2345 -0.00034619 NaN 3.5965 57 25 3 NaN NaN NaN NaN 0 NaN NaN 0 32926000 4953 11075 3134 3138 0.07379462764947675 EEHLEEPV 8 Unmodified _EEHLEEPV_ 0 0 0 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 MULTI-MSMS UPN47_class_I_Rep_3 4 491.2305603027344 2 491.229822 980.445091 0.23754 0.00011669 0.64611 0.00031739 0.88364 0.00043407 491.2301417665917 82.779 0.57834 86.116 85.877 86.455 3.337 111 69 2 0 0 0 0.82752 1 20728 20728 5.2307 0.47466 1 100520 4954 3417 3135 3139 6313 6313 -0.04591405961377859 EEHLEEPV 8 Unmodified _EEHLEEPV_ 0 0 0 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 491.229822 980.445091 0.19932 9.7913E-05 0.74554 0.00036623 0.94487 0.00046415 491.23025120046196 82.676 0.36389 86.214 85.912 86.276 3.5386 0.048992 7.8362E-05 NaN 5.2307 60 39 2 NaN NaN NaN NaN 0 NaN NaN 0 86561 4955 3417 3135 3139 -0.04591405961377859 EEHWFFLR 8 Unmodified _EEHWFFLR_ 0 0 0 L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|18|1|anti-sense L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|18|1|anti-sense L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 582.2854614257812 2 582.285266 1162.55598 NaN NaN NaN NaN NaN NaN NaN 20.956 1 24.501 24.001 25.001 3.5454 0 0 0 0.40746 1 1847 1847 0.69038 0.16561 1 4956 11417 3136 3140 6314 6314 -0.018797214626374625 EEIAFLKKL 9 Unmodified _EEIAFLKKL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_1 2 545.8289794921875 2 545.828975 1089.6434 0.36337 0.00019834 -0.078531 -4.2865E-05 0.28483 0.00015547 545.8288284457559 53.422 1.6957 56.949 56.665 58.361 3.5278 179 100 3 0 0 0 0.043452 3 11964 11912;11964;12216 51.63 28.894 1 219820 4957 824 3137 3141 6315;6316;6317 6316 0.10216059688286805 EEIAFLKKL 9 Unmodified _EEIAFLKKL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_2 3 545.8289794921875 2 545.828975 1089.6434 0.48906 0.00026694 -0.19287 -0.00010527 0.29619 0.00016167 545.8287451531745 53.819 1.1727 57.143 56.732 57.905 3.3246 145 71 3 0 0 0 0.015319 4 12116 12035;12075;12116;12156 66.457 32.373 1 356020 4958 824 3137 3141 6318;6319;6320;6321 6320 0.10216059688286805 EEIAFLKKL 9 Unmodified _EEIAFLKKL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_3 4 545.829345703125 2 545.828975 1089.6434 0.45145 0.00024641 -0.22305 -0.00012174 0.2284 0.00012467 545.8288026165957 54.035 1.1254 57.22 56.831 57.956 3.1856 108 69 2 0 0 0 0.11683 5 12259 12164;12167;12205;12259;12300 30.637 14.789 1 261610 4959 824 3137 3141 6322;6323;6324;6325;6326 6325 0.10216059688286805 EEIAFLKKL 9 Unmodified _EEIAFLKKL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN47_class_I_Rep_3 4 545.8292236328125 2 545.828975 1089.6434 NaN NaN NaN NaN NaN NaN NaN 54.525 1 57.711 57.211 58.211 3.1856 0 0 0 0.31276 1 12388 12388 10.074 6.1295 1 4960 824 3137 3141 6327 6327 0.10216059688286805 EEIAFLKKL 9 Unmodified _EEIAFLKKL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN47_class_I_Rep_3 4 545.742431640625 2 545.828975 1089.6434 NaN NaN NaN NaN NaN NaN NaN 55.331 1 58.509 58.009 59.009 3.1779 0 0 0 0.37476 1 12636 12636 6.7232 4.8789 1 4961 824 3137 3141 6328 6328 0.10216059688286805 EEIDEKIGF 9 Unmodified _EEIDEKIGF_ 0 0 0 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 MULTI-MSMS UPN47_class_I_Rep_2 3 540.2666625976562 2 540.266404 1078.51826 0.45135 0.00024385 -0.042585 -2.3007E-05 0.40877 0.00022084 540.2662539021605 51.38 0.65456 54.719 54.42 55.075 3.3386 44 32 2 0 0 0 0.43153 1 11335 11335 6.2058 2.2614 1 52992 4962 4496 3138 3142 6329 6329 -0.017862772387616133 EEIDFLRSNP 10 Unmodified _EEIDFLRSNP_ 0 0 0 nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN47_class_I_Rep_1 2 610.30126953125 2 610.30131 1218.58807 0.38731 0.00023638 -0.20695 -0.0001263 0.18037 0.00011008 610.3011515246947 65.517 0.86403 68.873 68.516 69.38 3.3557 124 49 3 0 0 0 0.30625 1 15638 15638 31.268 10.854 1 481190 4963 1476 3139 3143 6330 6330 -0.012483985701237543 EEIDLRSVGW 10 Unmodified _EEIDLRSVGW_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS UPN47_class_I_Rep_1 2 602.3038940429688 2 602.303852 1202.59315 0.37661 0.00022684 0.15548 9.3646E-05 0.53209 0.00032048 602.3038288547916 65.52 1.0189 68.876 68.476 69.495 3.3557 148 59 4 0 0 0 0.00058504 6 15580 15531;15580;15624;15669;15712;15751 103.82 74.742 1 847700 4964 1924 3140 3144 6331;6332;6333;6334;6335;6336 6332 -4.0947075376607245E-05 EEIDLRSVGW 10 Unmodified _EEIDLRSVGW_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS UPN47_class_I_Rep_2 3 602.3041381835938 2 602.303852 1202.59315 0.36857 0.00022199 0.19223 0.00011578 0.5608 0.00033777 602.3039314814088 65.757 0.82683 69.015 68.635 69.462 3.2586 123 50 4 0 0 0 0.1198 5 15770 15689;15726;15770;15813;15859 84.522 55.441 1 683380 4965 1924 3140 3144 6337;6338;6339;6340;6341 6339 -4.0947075376607245E-05 EEIDLRSVGW 10 Unmodified _EEIDLRSVGW_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS UPN47_class_I_Rep_3 4 602.3041381835938 2 602.303852 1202.59315 0.43981 0.0002649 0.088848 5.3513E-05 0.52866 0.00031841 602.3038409862996 65.68 0.9099 68.859 68.633 69.543 3.1795 116 58 3 0 0 0 0.12384 6 15772 15736;15772;15812;15852;15898;15941 74.2 65.474 1 469830 4966 1924 3140 3144 6342;6343;6344;6345;6346;6347 6343 -4.0947075376607245E-05 EEIEGFRY 8 Unmodified _EEIEGFRY_ 0 0 0 ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF;ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56 ENST00000415758.1_1_7:44608571-44609680:-|nuORF ENST00000415758.1_1_7:44608571-44609680:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 521.7459106445312 2 521.745639 1041.47673 0.25835 0.00013479 -0.071153 -3.7124E-05 0.1872 9.7671E-05 521.7455583266027 53.206 0.49825 53.206 52.903 53.401 0 71 51 2 0 0 0 0.82752 2 11399 11399;11446 20.454 13.164 1 274520 4967 2962 3141 3145 6348;6349 6348 -0.04235413207425154 EEIFGTIGM 9 Oxidation (M) _EEIFGTIGM(Oxidation (M))_ EEIFGTIGM(1) EEIFGTIGM(48) 0 0 1 nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-5|PRMT1 nc|ENSG00000126457|Q99873-5|PRMT1 MULTI-MSMS UPN47_class_I_Rep_1 2 506.73663330078125 2 506.736425 1011.4583 0.22396 0.00011349 -0.21705 -0.00010999 0.0069042 3.4986E-06 506.73620266025165 62.275 0.59935 65.643 65.392 65.991 3.3681 61 38 2 0 0 0 0.051515 1 14672 14672 48.346 25.197 1 103620 4968 2535 3142 3146 6350 6350 86 -0.046972911736247625 EEIFGTIGM 9 Oxidation (M) _EEIFGTIGM(Oxidation (M))_ EEIFGTIGM(1) EEIFGTIGM(48) 0 0 1 nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-5|PRMT1 nc|ENSG00000126457|Q99873-5|PRMT1 MULTI-MSMS UPN47_class_I_Rep_2 3 506.7361755371094 2 506.736425 1011.4583 0.15975 8.0949E-05 -0.27308 -0.00013838 -0.11333 -5.7431E-05 506.7361971096001 62.576 0.69106 65.832 65.36 66.051 3.2558 68 45 2 0 0 0 0.051515 2 14808 14765;14808 48.346 25.197 1 138720 4969 2535 3142 3146 6351;6352 6352 86 -0.046972911736247625 EEIFGTIGM 9 Oxidation (M) _EEIFGTIGM(Oxidation (M))_ EEIFGTIGM(1) EEIFGTIGM(51) 0 0 1 nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-5|PRMT1 nc|ENSG00000126457|Q99873-5|PRMT1 MULTI-MSMS UPN47_class_I_Rep_3 4 506.73565673828125 2 506.736425 1011.4583 0.21487 0.00010888 -0.11634 -5.8956E-05 0.098521 4.9924E-05 506.73618989460726 62.512 0.72109 65.681 65.323 66.044 3.1698 64 43 2 0 0 0 0.045397 2 14815 14815;14869 50.855 26.181 1 142780 4970 2535 3142 3146 6353;6354 6353 86 -0.046972911736247625 EEIHIYQF 8 Unmodified _EEIHIYQF_ 0 0 0 ENST00000573615.5_1_16:30391180-30392483:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1 ENST00000573615.5_1_16:30391180-30392483:-|nuORF ENST00000573615.5_1_16:30391180-30392483:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 539.76416015625 2 539.763832 1077.51311 0.29359 0.00015847 0.29912 0.00016145 0.59271 0.00031992 539.7638969591377 63.19 0.46116 63.19 62.872 63.333 0 64 48 2 0 0 0 0.82752 2 14123 14123;14183 24.674 1.5255 1 222380 4971 4879 3143 3147 6355;6356 6355 -0.022545363107155936 EEIHPSTF 8 Unmodified _EEIHPSTF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|2|1|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|2|1|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|2|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 480.7622985839844 2 480.227082 958.439611 0.24925 0.0001197 0.15805 7.5902E-05 0.40731 0.0001956 480.22703190054534 42.834 0.28694 42.834 42.748 43.035 0 41 29 2 0 0 0 0.72333 1 8551 8551 8.5933 1.304 1 94197 4972 12625 3144 3148 6357 6357 -0.041270847532018706 EEIKHMFHV 9 Unmodified _EEIKHMFHV_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS UPN46_class_I_Rep_3 1 585.2935180664062 2 585.292233 1168.56991 NaN NaN NaN NaN NaN NaN NaN 57.809 1 57.809 57.309 58.309 0 0 0 0 0.39518 1 12689 12689 1.8442 0 1 4973 1159 3145 3149 6358 6358 -0.007628120258686977 EEILYNLGF 9 Unmodified _EEILYNLGF_ 0 0 0 ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 ENST00000440623.5_1_2:182756982-182781157:+|nuORF ENST00000440623.5_1_2:182756982-182781157:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 549.27880859375 2 549.279315 1096.54408 0.48084 0.00026412 0.28915 0.00015882 0.76999 0.00042294 549.2794413188533 84.546 0.13715 88.112 88.041 88.178 3.5655 25 18 2 0 0 0 0.10568 1 21152 21152 32.786 18.88 1 96380 4974 3088 3146 3150 6359 6359 -0.0003338299648021348 EEILYNLGF 9 Unmodified _EEILYNLGF_ 0 0 0 ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 ENST00000440623.5_1_2:182756982-182781157:+|nuORF ENST00000440623.5_1_2:182756982-182781157:+|nuORF MSMS UPN47_class_I_Rep_1 2 549.2794189453125 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 84.424 1 87.99 87.49 88.49 3.5655 0 0 0 0.31276 1 21121 21121 10.074 2.7847 1 4975 3088 3146 3150 6360 6360 -0.0003338299648021348 EEILYNLGF 9 Unmodified _EEILYNLGF_ 0 0 0 ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 ENST00000440623.5_1_2:182756982-182781157:+|nuORF ENST00000440623.5_1_2:182756982-182781157:+|nuORF MSMS UPN47_class_I_Rep_2 3 549.2808227539062 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 84.51 1 87.933 87.433 88.433 3.4232 0 0 0 8.5505E-07 1 21073 21073 71.922 33.948 1 4976 3088 3146 3150 6361 6361 -0.0003338299648021348 EEILYNLGF 9 Unmodified _EEILYNLGF_ 0 0 0 ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 ENST00000440623.5_1_2:182756982-182781157:+|nuORF ENST00000440623.5_1_2:182756982-182781157:+|nuORF MSMS UPN47_class_I_Rep_2 3 549.2793579101562 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 84.569 1 87.992 87.492 88.492 3.4232 0 0 0 0.064572 1 21084 21084 32.786 13.424 1 4977 3088 3146 3150 6362 6362 -0.0003338299648021348 EEILYNLGF 9 Unmodified _EEILYNLGF_ 0 0 0 ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 ENST00000440623.5_1_2:182756982-182781157:+|nuORF ENST00000440623.5_1_2:182756982-182781157:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.2794189453125 2 549.279315 1096.54408 0.47264 0.00025961 -0.041067 -2.2557E-05 0.43157 0.00023705 549.2792563958092 84.62 0.57266 87.982 87.605 88.177 3.3615 124 71 2 0 0 0 0.011285 4 21219 21188;21219;21241;21251 69.105 32.978 1 208700 4978 3088 3146 3150 6363;6364;6365;6366 6364 -0.0003338299648021348 EEILYNLGF 9 Unmodified _EEILYNLGF_ 0 0 0 ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2 ENST00000440623.5_1_2:182756982-182781157:+|nuORF ENST00000440623.5_1_2:182756982-182781157:+|nuORF MSMS UPN47_class_I_Rep_3 4 549.279541015625 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 84.78 1 88.142 87.642 88.642 3.3615 0 0 0 0.024991 1 21279 21279 51.63 27.42 1 4979 3088 3146 3150 6367 6367 -0.0003338299648021348 EEIQQKPEN 9 Unmodified _EEIQQKPEN_ 0 0 0 L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|32|1|sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|32|1|sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|32|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.7722778320312 2 557.772385 1113.53022 0.41575 0.00023189 0.067474 3.7635E-05 0.48322 0.00026953 557.772275788471 61.277 0.71947 64.659 64.377 65.096 3.3815 106 52 3 0 0 0 0.14216 2 14439 14353;14439 26.268 0 1 337470 4980 14677 3147 3151 6368;6369 6369 -0.022006604955549847 EEIRYLHP 8 Unmodified _EEIRYLHP_ 0 0 0 REV__Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|43|3|anti-sense REV__Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|43|3|anti-sense MSMS UPN47_class_I_Rep_3 4 528.7595825195312 2 528.777274 1055.53999 NaN NaN NaN NaN NaN NaN NaN 20.776 1 24.125 23.625 24.625 3.3496 0 0 0 0.40738 1 2206 2206 0.79363 0 1 + 4981 32484 3148 3152 6370 6370 0.01444572300465552 EEIVELHPNGA 11 Unmodified _EEIVELHPNGA_ 0 0 0 REV__ENST00000497138.5_1_20:56806828-56807909:-|nuORF REV__ENST00000497138.5_1_20:56806828-56807909:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 604.3016357421875 2 604.30131 1206.58807 0.45928 0.00027754 0.024845 1.5014E-05 0.48412 0.00029256 604.3012696798097 61.535 1.5788 64.794 64.369 65.948 3.2594 293 103 5 0 0 0 0.26266 3 14406 14406;14528;14601 19.362 0 1 3363600 + 4982 22666 3149 3153 6371;6372;6373 6371 -0.006963985701304409 EEIVELHPNGA 11 Unmodified _EEIVELHPNGA_ 0 0 0 REV__ENST00000497138.5_1_20:56806828-56807909:-|nuORF REV__ENST00000497138.5_1_20:56806828-56807909:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 604.3016357421875 2 604.30131 1206.58807 0.39507 0.00023874 0.1429 8.6357E-05 0.53797 0.0003251 604.3013569318393 61.596 1.5979 64.763 64.304 65.901 3.1667 347 112 5 0 0 0 0.26266 3 14468 14468;14507;14627 31.268 0 1 4535300 + 4983 22666 3149 3153 6374;6375;6376 6374 -0.006963985701304409 EEKCKLTQSDG 11 Unmodified _EEKCKLTQSDG_ 0 0 0 REV__ENST00000505202.5_1_5:36607109-36608519:+|nuORF REV__ENST00000505202.5_1_5:36607109-36608519:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 619.288818359375 2 619.290085 1236.56562 0.45898 0.00028424 -0.28369 -0.00017568 0.17529 0.00010855 619.2882916869745 61.554 1.441 64.814 64.39 65.831 3.2594 323 94 6 0 0 0 0.63951 1 14677 14677 4.1895 0.24511 1 2475000 + 4984 22707 3150 3154 6377 6377 -0.04320366030083278 EEKGWRRRRWR 11 Unmodified _EEKGWRRRRWR_ 0 0 0 ENST00000597330.1_1_19:58557520-58558126:+|nuORF ENST00000597330.1_1_19:58557520-58558126:+|nuORF ENST00000597330.1_1_19:58557520-58558126:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 404.58221435546875 4 404.476366 1613.87636 -0.11573 -4.6809E-05 -2.9697 -0.0012012 -3.0854 -0.001248 404.47562550635064 33.675 0.084839 33.675 33.612 33.697 0 9 5 3 0 0 0 22.551 1 5912 5912 0.36667 0.22678 1 47391 4985 7650 3151 3155 6378 6378 0.09397554251268048 EEKHPRRR 8 Unmodified _EEKHPRRR_ 0 0 0 REV__nc|ENSG00000105699|Q86X29-6|LSR REV__nc|ENSG00000105699|Q86X29-6|LSR MSMS UPN48_class_I_Rep_3 7 554.3087158203125 2 554.310138 1106.60572 NaN NaN NaN NaN NaN NaN NaN 98.674 1 102.56 102.06 103.06 3.8839 0 0 0 0.40625 1 23379 23379 2.3027 0.24298 1 + 4986 18304 3152 3156 6379 6379 0.0566840626602243 EEKKKKKD 8 Unmodified _EEKKKKKD_ 0 0 0 nc|ENSG00000090905|Q8NDV7-6|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;ENSG00000090905.19,TNRC6A,chr16,+,I7.1,24777359,24778343|30|5.73|2|intron;ENSG00000090905.19,TNRC6A,chr16,+,I7.1,24777359,24778343|30|5.73|1|intron nc|ENSG00000090905|Q8NDV7-6|TNRC6A nc|ENSG00000090905|Q8NDV7-6|TNRC6A MSMS UPN46_class_I_Rep_3 1 516.8052978515625 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 92.506 1 92.506 92.006 93.006 0 0 0 0 0.40746 1 22389 22389 0.69038 0 1 4987 1358 3153 3157 6380 6380 0.08297414506046152 EEKLTLMLL 9 Unmodified _EEKLTLMLL_ 0 0 0 nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT nc|ENSG00000160299|O95613-2|PCNT nc|ENSG00000160299|O95613-2|PCNT MSMS UPN47_class_I_Rep_2 3 545.3167114257812 2 545.314843 1088.61513 NaN NaN NaN NaN NaN NaN NaN 80.146 1 83.515 83.015 84.015 3.3694 0 0 0 0.39428 1 19965 19965 2.0598 0 1 4988 3867 3154 3158 6381 6381 0.07436993716692086 EEKLVVLL 8 Unmodified _EEKLVVLL_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MSMS UPN48_class_I_Rep_1 5 471.7953796386719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 73.207 1 76.688 76.188 77.188 3.4812 0 0 0 0.40581 1 17236 17236 2.8892 0.31174 1 4989 4087 3155 3159 6382 6382 0.10660699251207006 EEKQLRFEE 9 Unmodified _EEKQLRFEE_ 0 0 0 REV__nc|ENSG00000160401|Q5JU67-2|CFAP157 REV__nc|ENSG00000160401|Q5JU67-2|CFAP157 MSMS UPN47_class_I_Rep_2 3 604.3181762695312 2 604.30131 1206.58807 NaN NaN NaN NaN NaN NaN NaN 32.394 1 35.849 35.349 36.349 3.4547 0 0 0 0.3967 1 5607 5607 1.4819 0.28856 1 + 4990 19885 3156 3160 6383 6383 -0.006963985701304409 EEKRLTSP 8 Unmodified _EEKRLTSP_ 0 0 0 ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176681|ENST00000320254|LRRC37A MSMS UPN48_class_I_Rep_1 5 480.2740173339844 2 480.261456 958.50836 NaN NaN NaN NaN NaN NaN NaN 42.65 1 46.158 45.658 46.658 3.5079 0 0 0 0.39436 1 7913 7913 10.074 0 1 4991 4767 3157 3161 6384 6384 0.027445795465155243 EEKRVIKR 8 Unmodified _EEKRVIKR_ 0 0 0 REV__L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense REV__L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense MSMS UPN47_class_I_Rep_1 2 529.3277587890625 2 529.327465 1056.64038 NaN NaN NaN NaN NaN NaN NaN 97.559 1 101.34 100.84 101.84 3.7861 0 0 0 0.40659 1 24173 24173 1.8442 0 1 + 4992 25177 3158 3162 6385 6385 0.11432229354136325 EEKTLFSC 8 Unmodified _EEKTLFSC_ 0 0 0 CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 478.72491455078125 2 478.723318 955.432083 0.26306 0.00012594 2.522 0.0012074 2.7851 0.0013333 478.7247508331176 115.95 0.03318 115.95 115.93 115.97 0 4 2 2 0 0 0 0.82752 1 28693 28693 2.3027 0 1 106860 4993 426 3159 3163 6386 6386 -0.04741560345121343 EEKTLFSC 8 Unmodified _EEKTLFSC_ 0 0 0 CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_1 2 2 478.723318 955.432083 0.24237 0.00011603 2.3085 0.0011051 2.5508 0.0012212 478.72446157381006 112.55 0.05352 116.12 116.1 116.15 3.572 0.087151 -4.5497E-05 NaN 2.3027 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 211040 4994 426 3159 3163 -0.04741560345121343 EELDFTRQTP 10 Unmodified _EELDFTRQTP_ 0 0 0 REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 618.2989501953125 2 618.298767 1234.58298 0.45027 0.0002784 -0.023316 -1.4416E-05 0.42696 0.00026399 618.2987312079242 60.706 0.95009 64.088 63.718 64.669 3.3815 213 85 3 0 0 0 0.30625 3 14197 14160;14197;14234 31.268 20.415 1 688340 + 4995 21921 3160 3164 6387;6388;6389 6388 -0.0249270243277806 EELDFTRQTP 10 Unmodified _EELDFTRQTP_ 0 0 0 REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 618.2987060546875 2 618.298767 1234.58298 0.39849 0.00024638 -0.087463 -5.4078E-05 0.31103 0.00019231 618.2986428071991 65.499 0.90744 68.855 68.488 69.396 3.3557 128 52 4 0 0 0 0.30625 1 15625 15625 31.268 31.268 1 597730 + 4996 21921 3160 3164 6390 6390 -0.0249270243277806 EELDFTRQTP 10 Unmodified _EELDFTRQTP_ 0 0 0 REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 618.298828125 2 618.298767 1234.58298 0.47422 0.00029321 -0.010369 -6.4111E-06 0.46385 0.0002868 618.298676272663 60.932 1.1838 64.198 63.771 64.955 3.2654 238 97 3 0 0 0 0.34027 4 14286 14251;14286;14323;14363 24.991 24.991 1 762750 + 4997 21921 3160 3164 6391;6392;6393;6394 6392 -0.0249270243277806 EELDFTRQTP 10 Unmodified _EELDFTRQTP_ 0 0 0 REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 618.2986450195312 2 618.298767 1234.58298 0.36851 0.00022785 -0.21265 -0.00013148 0.15586 9.6366E-05 618.2986911418226 65.741 0.92414 68.998 68.634 69.558 3.257 123 55 3 0 0 0 0.38974 1 15747 15747 20.415 20.415 1 432610 + 4998 21921 3160 3164 6395 6395 -0.0249270243277806 EELDFTRQTP 10 Unmodified _EELDFTRQTP_ 0 0 0 REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF REV__ENST00000366997.8_1_1:211917362-211917548:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 618.2991333007812 2 618.298767 1234.58298 0.38591 0.00023861 0.091048 5.6295E-05 0.47696 0.0002949 618.2987249824967 60.851 1.0339 64.016 63.723 64.757 3.1651 233 92 3 0 0 0 0.34027 3 14319 14319;14357;14397 24.991 24.991 1 996920 + 4999 21921 3160 3164 6396;6397;6398 6396 -0.0249270243277806 EELDKMEREA 10 Unmodified _EELDKMEREA_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14 ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MULTI-MSMS UPN47_class_I_Rep_2 3 625.2880249023438 2 625.290085 1248.56562 0.36852 0.00023043 -1.668 -0.001043 -1.2995 -0.00081254 625.2879607511727 65.768 0.92189 69.027 68.704 69.626 3.2588 128 54 4 0 0 0 0.4561 1 15736 15736 15.248 3.0078 1 322020 5000 2349 3161 3165 6399 6399 -0.048723660300765914 EELEKEFRQ 9 Unmodified _EELEKEFRQ_ 0 0 0 REV__USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant REV__USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 604.3015747070312 2 604.30131 1206.58807 0.42418 0.00025633 0.041943 2.5346E-05 0.46612 0.00028168 604.3013111205127 61.296 1.7576 64.678 64.281 66.039 3.3815 334 125 5 0 0 0 0.15122 4 14286 14286;14327;14367;14408 25.399 0.40835 1 4193300 + 5001 19765 3162 3166 6400;6401;6402;6403 6400 -0.006963985701304409 EELEKEFRQ 9 Unmodified _EELEKEFRQ_ 0 0 0 REV__USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant REV__USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 604.3016357421875 2 604.30131 1206.58807 0.45928 0.00027754 0.024845 1.5014E-05 0.48412 0.00029256 604.3012696798097 61.535 1.5788 64.794 64.369 65.948 3.2594 293 103 5 0 0 0 0.15122 2 14445 14445;14487 25.399 0.40835 1 3363600 + 5002 19765 3162 3166 6404;6405 6404 -0.006963985701304409 EELEKEFRQ 9 Unmodified _EELEKEFRQ_ 0 0 0 REV__USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant REV__USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 604.3016967773438 2 604.30131 1206.58807 0.39507 0.00023874 0.1429 8.6357E-05 0.53797 0.0003251 604.3013569318393 61.596 1.5979 64.763 64.304 65.901 3.1667 347 112 5 0 0 0 0.15122 2 14544 14544;14588 25.399 0.40835 1 4535300 + 5003 19765 3162 3166 6406;6407 6406 -0.006963985701304409 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN46_class_I_Rep_3 1 601.7821044921875 2 601.782418 1201.55028 0.57201 0.00034423 0.14688 8.8389E-05 0.71889 0.00043261 601.7824708891359 40.951 0.56654 40.951 40.695 41.261 0 80 59 2 0 0 0 0.0060665 3 7962 7962;8002;8034 90.135 42.541 1 356820 5004 2128 3163 3167 6408;6409;6410 6408 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MSMS UPN46_class_I_Rep_3 1 601.7836303710938 2 601.782418 1201.55028 NaN NaN NaN NaN NaN NaN NaN 41.426 1 41.426 40.926 41.926 0 0 0 0 0.34878 1 8121 8121 8.1555 1.4324 1 5005 2128 3163 3167 6411 6411 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_1 2 601.7827758789062 2 601.782418 1201.55028 -0.017683 -1.0642E-05 0.2027 0.00012198 0.18501 0.00011134 601.7823173645179 37.033 0.42972 40.702 40.512 40.941 3.6692 52 35 2 0 0 0 0.37599 1 7033 7033 9.3831 1.473 1 76868 5006 2128 3163 3167 6412 6412 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MSMS UPN47_class_I_Rep_2 3 601.7827758789062 2 601.782418 1201.55028 NaN NaN NaN NaN NaN NaN NaN 37.414 1 40.813 40.313 41.313 3.3988 0 0 0 0.25702 1 7132 7132 13.042 0.80181 1 5007 2128 3163 3167 6413 6413 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_3 4 601.7826538085938 2 601.782418 1201.55028 -0.068009 -4.0926E-05 -0.23421 -0.00014094 -0.30222 -0.00018187 601.7823948530929 37.509 0.51507 40.756 40.482 40.997 3.247 47 37 2 0 0 0 0.31407 3 7196 7156;7196;7239 13.042 3.6593 1 68903 5008 2128 3163 3167 6414;6415;6416 6415 -0.0424290955561446 EELEQKYTY 9 Unmodified _EELEQKYTY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 601.782418 1201.55028 -0.063788 -3.8386E-05 0.94133 0.00056648 0.87754 0.00052809 601.7843361603899 37.77 0.061531 41.012 40.991 41.053 3.2414 0.12336 0.00093912 NaN 90.135 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 31110 5009 2128 3163 3167 -0.0424290955561446 EELERILVY 9 Unmodified _EELERILVY_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS UPN47_class_I_Rep_1 2 582.3189697265625 2 582.318971 1162.62339 NaN NaN NaN NaN NaN NaN NaN 61.899 1 65.267 64.767 65.767 3.3681 0 0 0 0.38478 1 14545 14545 4.3292 0 1 5010 5098 3164 3168 6417 6417 0.04858263957657982 EELERILVY 9 Unmodified _EELERILVY_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS UPN47_class_I_Rep_1 2 582.3187255859375 2 582.318971 1162.62339 NaN NaN NaN NaN NaN NaN NaN 61.911 1 65.28 64.78 65.78 3.3681 0 0 0 0.29868 1 14549 14549 10.824 0 1 5011 5098 3164 3168 6418 6418 0.04858263957657982 EELEVAGERGF 11 Unmodified _EELEVAGERGF_ 0 0 0 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 MULTI-MSMS UPN47_class_I_Rep_1 2 618.8001708984375 2 618.298767 1234.58298 0.39849 0.00024638 -0.087463 -5.4078E-05 0.31103 0.00019231 618.2986428071991 65.499 0.90744 68.855 68.488 69.396 3.3557 128 52 4 0 0 0 0.54441 2 15756 15756;15783 6.6304 4.5289 1 597730 5012 2549 3165 3169 6419;6420 6419 -0.0249270243277806 EELEVAGERGF 11 Unmodified _EELEVAGERGF_ 0 0 0 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 ENSG00000126767|ENST00000376983|ELK1 MULTI-MSMS UPN47_class_I_Rep_2 3 618.2990112304688 2 618.298767 1234.58298 0.47422 0.00029321 -0.010369 -6.4111E-06 0.46385 0.0002868 618.298676272663 60.932 1.1838 64.198 63.771 64.955 3.2654 238 97 3 0 0 0 0.32209 1 14213 14213 13.615 13.615 1 762750 5013 2549 3165 3169 6421 6421 -0.0249270243277806 EELEVRTSTCA 11 Unmodified _EELEVRTSTCA_ 0 0 0 MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 619.28857421875 2 619.290085 1236.56562 0.44485 0.00027549 -0.37676 -0.00023333 0.068082 4.2162E-05 619.2882934725876 61.299 1.7177 64.68 64.305 66.022 3.3815 418 122 6 0 0 0 0.15188 7 14436 14320;14360;14402;14436;14472;14511;14557 51.415 26.424 1 2777200 5014 16272 3166 3170 6422;6423;6424;6425;6426;6427;6428 6425 -0.043203660300605407 EELEVRTSTCA 11 Unmodified _EELEVRTSTCA_ 0 0 0 MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 619.28857421875 2 619.290085 1236.56562 0.45898 0.00028424 -0.28369 -0.00017568 0.17529 0.00010855 619.2882916869745 61.554 1.441 64.814 64.39 65.831 3.2594 323 94 6 0 0 0 0.12514 6 14429 14429;14474;14512;14552;14590;14630 65.474 29.383 1 2475000 5015 16272 3166 3170 6429;6430;6431;6432;6433;6434 6429 -0.043203660300605407 EELEVRTSTCA 11 Unmodified _EELEVRTSTCA_ 0 0 0 MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 619.2887573242188 2 619.290085 1236.56562 0.3977 0.00024629 -0.10656 -6.5989E-05 0.29114 0.0001803 619.2883532864964 61.597 1.5242 64.763 64.356 65.88 3.1667 392 105 6 0 0 0 0.12514 8 14494 14494;14537;14576;14618;14657;14697;14739;14786 65.474 34.205 1 3147500 5016 16272 3166 3170 6435;6436;6437;6438;6439;6440;6441;6442 6435 -0.043203660300605407 EELEVRTSTCA 11 Unmodified _EELEVRTSTCA_ 0 0 0 MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MLT1B_dup16898|chr20:1480422-1480804:+|1.1187940407155723|0.0833843348790479|3.75|147.0|32|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 619.290085 1236.56562 0.3977 0.00024629 -0.10656 -6.5989E-05 0.29114 0.0001803 619.2883532864964 61.597 1.5242 64.763 64.356 65.88 3.1667 0.010951 0.00017315 NaN 65.474 392 105 6 NaN NaN NaN NaN 0 NaN NaN 0 3147500 5017 16272 3166 3170 -0.043203660300605407 EELFPDWIF 9 Unmodified _EELFPDWIF_ 0 0 0 nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-2|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 nc|ENSG00000050748|P45984-3|MAPK9 nc|ENSG00000050748|P45984-3|MAPK9 MULTI-MSMS UPN48_class_I_Rep_1 5 598.2869873046875 2 598.28714 1194.55973 0.44565 0.00026663 -0.62748 -0.00037541 -0.18183 -0.00010879 598.2867208191451 77.388 0.038155 80.91 80.9 80.938 3.5221 4 2 2 0 0 0 0.46434 1 18420 18420 4.3292 0.73274 1 116260 5018 16623 3167 3171 6443 6443 -0.029770964794579413 EELGFRPEY 9 Unmodified _EELGFRPEY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN47_class_I_Rep_2 3 570.2719116210938 2 570.272021 1138.52949 0.44496 0.00025375 -0.8596 -0.00049021 -0.41464 -0.00023646 570.2719541569332 50.11 1.2182 53.453 52.986 54.204 3.3431 121 61 2 0 0 0 0.028995 6 11004 11004;11012;11016;11054;11090;11113 57.722 34.574 1 309040 5019 3325 3168 3172 6444;6445;6446;6447;6448;6449 6444 -0.03423455144616128 EELGFRPEY 9 Unmodified _EELGFRPEY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 570.272021 1138.52949 0.39704 0.00022642 0.44844 0.00025573 0.84548 0.00048215 570.2723911225353 49.559 0.056007 53.084 53.047 53.103 3.5246 -0.13824 0.0011771 NaN 57.722 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 32809 5020 3325 3168 3172 -0.03423455144616128 EELGFRPEY 9 Unmodified _EELGFRPEY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 570.272021 1138.52949 0.42404 0.00024182 0.81983 0.00046752 1.2439 0.00070934 570.2725147373623 49.411 0.10236 53.129 53.045 53.147 3.7175 -0.093261 0.0016006 NaN 57.722 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 68843 5021 3325 3168 3172 -0.03423455144616128 EELGPEGIRD 10 Unmodified _EELGPEGIRD_ 0 0 0 REV__ENST00000519655.6_1_8:90624043-90640412:-|nuORF REV__ENST00000519655.6_1_8:90624043-90640412:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.7726440429688 2 557.772385 1113.53022 0.46006 0.00025661 -0.10586 -5.9046E-05 0.3542 0.00019756 557.7721913811048 61.457 0.80403 64.716 64.479 65.283 3.2594 101 51 3 0 0 0 0.4965 1 14478 14478 12.241 1.4411 1 380010 + 5022 22774 3169 3173 6450 6450 -0.022006604955549847 EELILVHDF 9 Unmodified _EELILVHDF_ 0 0 0 ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD MULTI-MSMS UPN46_class_I_Rep_3 1 557.7927856445312 2 557.792589 1113.57063 0.38502 0.00021476 0.12393 6.9125E-05 0.50894 0.00028388 557.7924457126737 71.393 0.11279 71.393 71.327 71.439 0 17 12 2 0 0 0 0.46869 1 16448 16448 3.9444 1.6417 1 77577 5023 5210 3170 3174 6451 6451 0.01838305894852965 EELILVHDF 9 Unmodified _EELILVHDF_ 0 0 0 ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD MULTI-MSMS UPN47_class_I_Rep_1 2 557.7927856445312 2 557.792589 1113.57063 0.36762 0.00020506 -0.099006 -5.5225E-05 0.26862 0.00014983 557.7924915978991 65.773 0.98694 69.131 68.684 69.671 3.3576 149 60 4 0 0 0 0.0064763 7 15717 15622;15651;15679;15717;15759;15800;15846 88.954 67.417 1 759830 5024 5210 3170 3174 6452;6453;6454;6455;6456;6457;6458 6455 0.01838305894852965 EELILVHDF 9 Unmodified _EELILVHDF_ 0 0 0 ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD MULTI-MSMS UPN47_class_I_Rep_2 3 557.7926635742188 2 557.792589 1113.57063 0.37043 0.00020662 -0.012857 -7.1716E-06 0.35757 0.00019945 557.7924795890623 66.101 0.9249 69.36 68.848 69.773 3.2588 121 53 3 0 0 0 0.0074206 8 15844 15758;15764;15802;15844;15882;15926;15963;15980 96.111 68.482 1 468900 5025 5210 3170 3174 6459;6460;6461;6462;6463;6464;6465;6466 6462 0.01838305894852965 EELILVHDF 9 Unmodified _EELILVHDF_ 0 0 0 ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD ENSG00000187808|ENST00000343905|SOWAHD MULTI-MSMS UPN47_class_I_Rep_3 4 557.7927856445312 2 557.792589 1113.57063 0.43476 0.00024251 -0.10812 -6.0311E-05 0.32664 0.00018219 557.7924579452356 66.044 1.1464 69.23 68.801 69.948 3.1853 169 78 3 0 0 0 0.0052487 6 15920 15823;15834;15880;15920;15960;16000 99.799 72.17 1 558000 5026 5210 3170 3174 6467;6468;6469;6470;6471;6472 6470 0.01838305894852965 EELIVVTSY 9 Unmodified _EELIVVTSY_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MSMS UPN46_class_I_Rep_3 1 526.7788696289062 2 526.779148 1051.54374 NaN NaN NaN NaN NaN NaN NaN 71.21 1 71.21 70.71 71.71 0 0 0 0 0.15455 1 16395 16395 19.257 7.6167 1 5027 4117 3171 3175 6473 6473 0.02003197283670488 EELIVVTSY 9 Unmodified _EELIVVTSY_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MSMS UPN46_class_I_Rep_3 1 526.7786254882812 2 526.779148 1051.54374 NaN NaN NaN NaN NaN NaN NaN 71.25 1 71.25 70.75 71.75 0 0 0 0 0.37476 1 16404 16404 6.7232 0 1 5028 4117 3171 3175 6474 6474 0.02003197283670488 EELIVVTSY 9 Unmodified _EELIVVTSY_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MSMS UPN46_class_I_Rep_3 1 526.7962036132812 2 526.779148 1051.54374 NaN NaN NaN NaN NaN NaN NaN 71.299 1 71.299 70.799 71.799 0 0 0 0 0.37692 1 16418 16418 6.2058 1.4498 1 5029 4117 3171 3175 6475 6475 0.02003197283670488 EELLDAQHGPV 11 Unmodified _EELLDAQHGPV_ 0 0 0 L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|5|1|sense L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|5|1|sense L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 604.3007202148438 2 604.30131 1206.58807 0.42418 0.00025633 0.041943 2.5346E-05 0.46612 0.00028168 604.3013111205127 61.296 1.7576 64.678 64.281 66.039 3.3815 334 125 5 0 0 0 0.37961 1 14535 14535 10.8 3.6978 1 4193300 5030 11827 3172 3176 6476 6476 -0.006963985701531783 EELLDRVWSC 10 Unmodified _EELLDRVWSC_ 0 0 0 REV__L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|293|2|anti-sense REV__L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_2 3 625.2877807617188 2 625.297713 1248.58087 NaN NaN NaN NaN NaN NaN NaN 65.836 1 69.094 68.594 69.594 3.2588 0 0 0 0.53105 1 15778 15778 12.241 1.4411 1 + 5031 29629 3173 3177 6477 6477 -0.03347454442200615 EELLGDGHSY 10 Unmodified _EELLGDGHSY_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENST00000495288.5_1_1:151372054-151373071:+|nuORF ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MSMS UPN47_class_I_Rep_1 2 560.2509765625 2 560.251286 1118.48802 NaN NaN NaN NaN NaN NaN NaN 40.292 1 43.959 43.459 44.459 3.6668 0 0 0 0.53105 1 7973 7973 5.7319 3.1544 1 5032 3833 3174 3178 6478 6478 -0.06648635903934519 EELLLFIEKYR 11 Unmodified _EELLLFIEKYR_ 0 0 0 REV__L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|89|2|anti-sense REV__L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_3 7 484.9407653808594 3 484.941415 1451.80242 NaN NaN NaN NaN NaN NaN NaN 34.389 1 38.069 37.569 38.569 3.6797 0 0 0 0.38417 1 5458 5458 0.50596 0.09769 1 + 5033 27246 3175 3179 6479 6479 0.09458728525760307 EELNDLIQRF 10 Unmodified _EELNDLIQRF_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_1 2 638.83056640625 2 638.830234 1275.64592 0.42227 0.00026976 -0.13312 -8.5038E-05 0.28915 0.00018472 638.8300659839439 69.134 0.55955 72.502 72.26 72.82 3.3678 77 42 2 0 0 0 0.2166 5 16782 16690;16697;16739;16782;16829 51.488 26.497 1 289100 5034 1187 3176 3180 6480;6481;6482;6483;6484 6483 0.019118633552807296 EELNDLIQRF 10 Unmodified _EELNDLIQRF_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_1 2 638.830078125 2 638.830234 1275.64592 NaN NaN NaN NaN NaN NaN NaN 69.425 1 72.793 72.293 73.293 3.3678 0 0 0 0.53105 1 16821 16821 3.2813 0 1 5035 1187 3176 3180 6485 6485 0.019118633552807296 EELNDLIQRF 10 Unmodified _EELNDLIQRF_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_2 3 638.8305053710938 2 638.830234 1275.64592 0.40168 0.00025661 -0.087933 -5.6175E-05 0.31375 0.00020043 638.8302156233699 69.311 0.74634 72.587 72.372 73.119 3.2761 96 61 2 0 0 0 0.29657 7 16822 16782;16819;16822;16860;16869;16911;16919 34.222 19.904 1 174740 5036 1187 3176 3180 6486;6487;6488;6489;6490;6491;6492 6488 0.019118633552807296 EELNDLIQRF 10 Unmodified _EELNDLIQRF_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_3 4 638.83056640625 2 638.830234 1275.64592 0.4537 0.00028984 -0.17166 -0.00010966 0.28204 0.00018018 638.8301410251878 69.377 0.69491 72.581 72.307 73.002 3.2044 84 54 2 0 0 0 0.3081 4 16930 16890;16930;16970;17012 30.703 19.209 1 144740 5037 1187 3176 3180 6493;6494;6495;6496 6494 0.019118633552807296 EELPHIHAF 9 Unmodified _EELPHIHAF_ 0 0 0 ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENST00000567436.1_1_16:30204298-30204508:-|nuORF ENST00000567436.1_1_16:30204298-30204508:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 546.7779541015625 2 546.777274 1091.53999 0.2138 0.0001169 0.77908 0.00042598 0.99288 0.00054289 546.7774590711837 47.666 0.098194 51.361 51.274 51.372 3.6951 13 10 2 0 0 0 0.07233 1 10216 10216 40.449 29.625 1 116830 5038 4427 3177 3181 6497 6497 -0.002114276995371256 EELPHIHAF 9 Unmodified _EELPHIHAF_ 0 0 0 ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENST00000567436.1_1_16:30204298-30204508:-|nuORF ENST00000567436.1_1_16:30204298-30204508:-|nuORF MSMS UPN47_class_I_Rep_2 3 546.7776489257812 2 546.777274 1091.53999 NaN NaN NaN NaN NaN NaN NaN 48.084 1 51.433 50.933 51.933 3.3492 0 0 0 0.381 1 10364 10364 5.2307 2.9279 1 5039 4427 3177 3181 6498 6498 -0.002114276995371256 EELQKQAAQ 9 Unmodified _EELQKQAAQ_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MULTI-MSMS UPN47_class_I_Rep_1 2 522.7695922851562 2 522.769645 1043.52474 0.27419 0.00014334 1.2488 0.00065282 1.5229 0.00079615 522.7702431872643 65.499 1.1018 68.855 68.552 69.654 3.3557 127 66 2 0 0 0 0.21527 1 15626 15626 19.257 9.1831 1 302200 5040 4212 3178 3182 6499 6499 0.00471660712605626 EELQQKVSY 9 Unmodified _EELQQKVSY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN46_class_I_Rep_3 1 562.285400390625 2 562.285128 1122.5557 0.35126 0.00019751 0.13119 7.3764E-05 0.48244 0.00027127 562.2851186212724 37.514 0.84098 37.514 37.24 38.081 0 197 83 4 0 0 0 0.001952 8 7075 7002;7041;7075;7115;7124;7150;7182;7195 151.48 92.111 1 871660 5041 4382 3179 3183 6500;6501;6502;6503;6504;6505;6506;6507 6502 -0.0006718597312556085 EELQQKVSY 9 Unmodified _EELQQKVSY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_1 2 562.2839965820312 2 562.285128 1122.5557 -0.046521 -2.6158E-05 0.15764 8.864E-05 0.11112 6.2482E-05 562.2852851969219 33.614 0.34405 37.313 37.133 37.477 3.6983 36 22 2 0 0 0 0.43153 1 5975 5975 6.2058 1.4498 1 81816 5042 4382 3179 3183 6508 6508 -0.0006718597312556085 EELQQKVSY 9 Unmodified _EELQQKVSY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_2 3 562.2850341796875 2 562.285128 1122.5557 0.045942 2.5833E-05 0.33619 0.00018903 0.38213 0.00021487 562.2851777591104 33.846 0.58339 37.286 37.084 37.667 3.4398 41 38 2 0 0 0 0.17979 1 6037 6037 22.658 4.5117 1 57328 5043 4382 3179 3183 6509 6509 -0.0006718597312556085 EELQQKVSY 9 Unmodified _EELQQKVSY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_3 4 562.2846069335938 2 562.285128 1122.5557 -0.12599 -7.084E-05 0.37999 0.00021366 0.254 0.00014282 562.2853170502977 34.007 0.34526 37.282 37.112 37.458 3.2748 35 24 2 0 0 0 0.15547 2 6146 6128;6146 24.991 5.734 1 51801 5044 4382 3179 3183 6510;6511 6511 -0.0006718597312556085 EELRDIDQP 9 Unmodified _EELRDIDQP_ 0 0 0 REV__ENSG00000163827|ENST00000395905|LRRC2 REV__ENSG00000163827|ENST00000395905|LRRC2 MULTI-MSMS UPN47_class_I_Rep_3 4 557.7723999023438 2 557.772385 1113.53022 0.38851 0.0002167 -0.091012 -5.0764E-05 0.2975 0.00016594 557.7722179592237 61.606 0.71857 64.773 64.452 65.171 3.1667 96 51 2 0 0 0 0.26468 1 14542 14542 16.149 0 1 587330 + 5045 20010 3180 3184 6512 6512 -0.02200660495577722 EELRGHSRA 9 Unmodified _EELRGHSRA_ 0 0 0 REV__ENST00000397940.5_3_8:21881740-21881821:+|nuORF REV__ENST00000397940.5_3_8:21881740-21881821:+|nuORF MSMS UPN47_class_I_Rep_3 4 527.7713012695312 2 527.773054 1053.53155 NaN NaN NaN NaN NaN NaN NaN 21.479 1 24.829 24.329 25.329 3.3496 0 0 0 0.38784 1 2411 2411 3.5965 0.60125 1 + 5046 22135 3181 3185 6513 6513 0.006930183838449011 EELRKAMAQTQ 11 Unmodified _EELRKAMAQTQ_ 0 0 0 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 nc|ENSG00000002079|Q9H6N6|MYH16 MSMS UPN46_class_I_Rep_3 1 435.55914306640625 3 435.559088 1303.65543 NaN NaN NaN NaN NaN NaN NaN 102.56 1 102.56 102.06 103.06 0 0 0 0 0.38417 1 25027 25027 0.40827 0.24894 1 5047 16614 3182 3186 6514 6514 0.015753083691379288 EELRTAAGEY 10 Unmodified _EELRTAAGEY_ 0 0 0 nc|ENSG00000107937|Q9BZE4-3|GTPBP4;ENSG00000107937.19,GTPBP4,chr10,+,I3.1,992660,995928|28|7.83|3|intron;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4 nc|ENSG00000107937|Q9BZE4-3|GTPBP4 nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MULTI-MSMS UPN47_class_I_Rep_1 2 570.2733154296875 2 569.772385 1137.53022 0.21696 0.00012362 -2.0195 -0.0011506 -1.8025 -0.001027 570.2718867290939 49.756 0.84115 53.415 53.064 53.905 3.6592 71 49 2 0 0 0 0.48573 1 10966 10966 13.042 1.4022 1 263680 5048 1844 3183 3187 6515 6515 -0.03304660495564349 EELRTAAGEY 10 Unmodified _EELRTAAGEY_ 0 0 0 nc|ENSG00000107937|Q9BZE4-3|GTPBP4;ENSG00000107937.19,GTPBP4,chr10,+,I3.1,992660,995928|28|7.83|3|intron;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4 nc|ENSG00000107937|Q9BZE4-3|GTPBP4 nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MULTI-MATCH UPN48_class_I_Rep_1 5 2 569.772385 1137.53022 0.39937 0.00022755 -2.9358 -0.0016727 -2.5364 -0.0014452 570.2720872237205 49.78 0.044861 53.305 53.279 53.324 3.5246 -0.078069 -0.0011929 NaN 13.042 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 23517 5049 1844 3183 3187 -0.03304660495564349 EELVIVLK 8 Unmodified _EELVIVLK_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MSMS UPN47_class_I_Rep_2 3 471.79498291015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 35.055 1 38.481 37.981 38.981 3.4253 0 0 0 0.40746 1 6415 6415 0.69038 0 1 5050 2612 3184 3188 6516 6516 0.106606992511729 EELVRRRRR 9 Unmodified _EELVRRRRR_ 0 0 0 ENST00000348370.8_1_15:59279867-59279987:+|nuORF ENST00000348370.8_1_15:59279867-59279987:+|nuORF ENST00000348370.8_1_15:59279867-59279987:+|nuORF MSMS UPN46_class_I_Rep_3 1 635.3848266601562 2 635.384168 1268.75378 NaN NaN NaN NaN NaN NaN NaN 26.365 1 26.365 25.865 26.865 0 0 0 0 0.40038 1 3759 3759 0.6015 0.076735 1 5051 6266 3185 3189 6517 6517 0.1301571751987467 EELYAKKGLY 10 Unmodified _EELYAKKGLY_ 0 0 0 REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B MULTI-MSMS UPN47_class_I_Rep_2 3 405.2203063964844 3 405.22029 1212.63904 -0.89468 -0.00036254 0.63706 0.00025815 -0.25762 -0.00010439 405.2205324717787 43.899 0.54163 47.256 46.953 47.494 3.358 41 26 2 0 0 0 0.56273 1 9112 9112 1.9064 0.57673 1 55223 + 5052 20139 3186 3190 6518 6518 0.0412255047472172 EELYTIHPTP 10 Unmodified _EELYTIHPTP_ 0 0 0 ENSG00000155897|ENST00000286355|ADCY8 ENSG00000155897|ENST00000286355|ADCY8 ENSG00000155897|ENST00000286355|ADCY8 MULTI-MSMS UPN47_class_I_Rep_1 2 600.2835083007812 2 600.300778 1198.587 0.34493 0.00020706 0.075936 4.5585E-05 0.42087 0.00025265 600.3006759029132 54.157 1.0613 57.658 57.313 58.374 3.5014 144 58 4 0 0 0 0.56078 1 12400 12400 3.2813 1.1953 1 569270 5053 3714 3187 3191 6519 6519 -0.004346129390569331 EEMDLFTKY 9 Oxidation (M) _EEM(Oxidation (M))DLFTKY_ EEM(1)DLFTKY EEM(42)DLFTKY 0 0 1 ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF;ENSG00000092020|ENST00000261475|PPP2R3C ENST00000556254.1_1_14:35579616-35591165:-|nuORF ENST00000556254.1_1_14:35579616-35591165:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 596.2657470703125 2 596.265547 1190.51654 0.37088 0.00022114 0.033413 1.9923E-05 0.40429 0.00024107 596.2655603701355 48.557 0.6421 51.904 51.638 52.28 3.3465 65 33 3 0 0 0 0.066633 1 10533 10533 41.84 20.093 1 125250 5054 1384 3188 3192 6520 6520 39 -0.07109654319015135 EEMEFQRF 8 Oxidation (M) _EEM(Oxidation (M))EFQRF_ EEM(1)EFQRF EEM(92)EFQRF 0 0 1 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS UPN46_class_I_Rep_3 1 566.2422485351562 2 566.242406 1130.47026 0.44105 0.00024974 -0.1881 -0.00010651 0.25295 0.00014323 566.2422377755292 42.909 0.97343 42.909 42.578 43.551 0 184 90 3 0 0 0 0.82752 3 8494 8494;8525;8557 115.69 90.293 1 955570 5055 3495 3189 3193 6521;6522;6523 6521 115 -0.0897567443043954 EEMIQKVEKKV 11 Unmodified _EEMIQKVEKKV_ 0 0 0 REV__nc|ENSG00000141258|O43147-5|SGSM2 REV__nc|ENSG00000141258|O43147-5|SGSM2 MSMS UPN47_class_I_Rep_3 4 454.2623291015625 3 454.255005 1359.74319 NaN NaN NaN NaN NaN NaN NaN 36.225 1 39.479 38.979 39.979 3.2547 0 0 0 0.38417 1 6805 6805 1.0136 0.31591 1 + 5056 19369 3190 3194 6524 6524 0.07770509239912826 EEMRKELEP 9 Unmodified _EEMRKELEP_ 0 0 0 REV__ENSG00000102302|ENST00000375135|FGD1 REV__ENSG00000102302|ENST00000375135|FGD1 MSMS UPN47_class_I_Rep_3 4 580.7863159179688 2 580.784438 1159.55432 NaN NaN NaN NaN NaN NaN NaN 54.299 1 57.485 56.985 57.985 3.1856 0 0 0 0.39518 1 12318 12318 1.8442 0 1 + 5057 18192 3191 3195 6525 6525 -0.01907143333573913 EEMWDMLY 8 Unmodified _EEMWDMLY_ 0 0 0 REV__nc|ENSG00000173898|O15020-2|SPTBN2 REV__nc|ENSG00000173898|O15020-2|SPTBN2 MSMS UPN47_class_I_Rep_1 2 558.72314453125 2 558.722461 1115.43037 NaN NaN NaN NaN NaN NaN NaN 119.16 1 122.76 122.26 123.26 3.6036 0 0 0 0.40746 1 29597 29597 0.69038 0 1 + 5058 20502 3192 3196 6526 6526 -0.12272937425382224 EENFAIVF 8 Unmodified _EENFAIVF_ 0 0 0 ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000147416|ENST00000276390|ATP6V1B2 ENST00000523482.5_1_8:20054917-20070443:+|nuORF ENST00000523482.5_1_8:20054917-20070443:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 484.7398376464844 2 484.739825 967.465098 0.27466 0.00013314 0.1239 6.0057E-05 0.39855 0.00019319 484.7397431470361 83.965 0.40913 83.965 83.697 84.106 0 77 46 3 0 0 0 0.82752 2 19952 19952;19984 18.135 3.5533 1 483330 5059 3474 3193 3197 6527;6528 6527 -0.01993610230761078 EENFAIVF 8 Unmodified _EENFAIVF_ 0 0 0 ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000147416|ENST00000276390|ATP6V1B2 ENST00000523482.5_1_8:20054917-20070443:+|nuORF ENST00000523482.5_1_8:20054917-20070443:+|nuORF MSMS UPN46_class_I_Rep_3 1 484.7398681640625 2 484.739825 967.465098 NaN NaN NaN NaN NaN NaN NaN 83.739 1 83.739 83.239 84.239 0 0 0 0 0.24027 1 19903 19903 44.407 8.3628 1 5060 3474 3193 3197 6529 6529 -0.01993610230761078 EENKIHSY 8 Unmodified _EENKIHSY_ 0 0 0 L1M4_dup8029|chr7:99114265-99115311:+|1.6321930968374918|0.022380010475913|6.19|151.0|8|1|sense L1M4_dup8029|chr7:99114265-99115311:+|1.6321930968374918|0.022380010475913|6.19|151.0|8|1|sense L1M4_dup8029|chr7:99114265-99115311:+|1.6321930968374918|0.022380010475913|6.19|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.2433776855469 2 510.243264 1018.47197 -0.35777 -0.00018255 0.54687 0.00027904 0.18911 9.6491E-05 510.2435364245336 30.443 0.48633 33.754 33.554 34.04 3.3116 54 38 2 0 0 0 0.82752 1 5019 5019 5.7604 1.4312 1 41705 5061 8916 3194 3198 6530 6530 -0.036522973501973865 EENKLVKKI 9 Unmodified _EENKLVKKI_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS UPN47_class_I_Rep_1 2 550.8369750976562 2 550.837331 1099.66011 -0.069589 -3.8332E-05 -0.25136 -0.00013846 -0.32095 -0.00017679 550.8371095555034 19.601 0.85332 23.213 22.834 23.687 3.6118 164 95 2 0 0 0 0.48846 1 1772 1772 1.8442 0.19162 1 86969 5062 2391 3195 3199 6531 6531 0.11426560574227551 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MULTI-MSMS UPN46_class_I_Rep_3 1 545.2769775390625 2 545.276772 1088.53899 0.37604 0.00020504 0.061701 3.3644E-05 0.43774 0.00023869 545.2767649614157 83.775 0.479 83.775 83.364 83.843 0 99 49 3 0 0 0 0.006828 2 19893 19860;19893 72.968 29.11 1 1102300 5063 4042 3196 3200 6532;6533 6533 -0.0017368685910241766 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MSMS UPN46_class_I_Rep_3 1 545.2772216796875 2 545.276772 1088.53899 NaN NaN NaN NaN NaN NaN NaN 83.447 1 83.447 82.947 83.947 0 0 0 0 0.040938 1 19821 19821 40.239 11.752 1 5064 4042 3196 3200 6534 6534 -0.0017368685910241766 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MSMS UPN46_class_I_Rep_3 1 545.2765502929688 2 545.276772 1088.53899 NaN NaN NaN NaN NaN NaN NaN 83.846 1 83.846 83.346 84.346 0 0 0 0 0.098423 1 19930 19930 24.991 3.2443 1 5065 4042 3196 3200 6535 6535 -0.0017368685910241766 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MULTI-SECPEP UPN46_class_I_Rep_3 1 545.31689453125 2 545.276772 1088.53899 0.37666 0.00020538 -0.81038 -0.00044188 -0.43373 -0.0002365 545.2765531357505 83.962 0.14594 83.962 83.882 84.028 0 19 16 2 0 0 0 0.087835 1 19968 19968 19.362 3.5148 1 63852 5066 4042 3196 3200 6536 6536 -0.0017368685910241766 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MULTI-MSMS UPN47_class_I_Rep_1 2 545.27685546875 2 545.276772 1088.53899 0.45713 0.00024926 -0.18684 -0.00010188 0.27029 0.00014738 545.2765947672067 78.861 0.56597 82.307 82.016 82.582 3.4456 95 52 2 0 0 0 0.081756 2 19642 19605;19642 38.176 9.094 1 139450 5067 4042 3196 3200 6537;6538 6538 -0.0017368685910241766 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MULTI-MSMS UPN47_class_I_Rep_2 3 545.2764892578125 2 545.276772 1088.53899 0.46208 0.00025196 -0.14658 -7.9926E-05 0.3155 0.00017203 545.2765753350377 79.012 0.6212 82.368 82.104 82.725 3.3554 101 58 2 0 0 0 0.12096 3 19685 19610;19644;19685 29.841 11.694 1 173030 5068 4042 3196 3200 6539;6540;6541 6541 -0.0017368685910241766 EENPIVLEF 9 Unmodified _EENPIVLEF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MULTI-MSMS UPN47_class_I_Rep_3 4 545.2771606445312 2 545.276772 1088.53899 0.45467 0.00024792 -0.12452 -6.7897E-05 0.33015 0.00018002 545.2766830617884 79.018 0.72296 82.313 82.079 82.802 3.295 117 65 3 0 0 0 0.033731 3 19755 19682;19719;19755 55.503 19.376 1 185250 5069 4042 3196 3200 6542;6543;6544 6544 -0.0017368685910241766 EENTNILKF 9 Unmodified _EENTNILKF_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-MSMS UPN47_class_I_Rep_2 3 554.789306640625 2 554.287671 1106.56079 0.51429 0.00028507 -0.58023 -0.00032162 -0.065939 -3.6549E-05 554.7889859259692 52.331 0.55794 55.664 55.238 55.796 3.3332 86 40 3 0 0 0 0.1249 1 11644 11644 29.082 5.061 1 161390 5070 3096 3197 3201 6545 6545 0.011771178894832701 EENTNILKF 9 Unmodified _EENTNILKF_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-MSMS UPN47_class_I_Rep_3 4 554.2868041992188 2 554.287671 1106.56079 0.50957 0.00028245 -0.72768 -0.00040335 -0.21811 -0.00012089 554.2871289698192 52.547 0.54133 55.752 55.32 55.862 3.2055 86 47 2 0 0 0 0.13244 1 11744 11744 27.629 3.6082 1 224110 5071 3096 3197 3201 6546 6546 0.011771178894832701 EENWKREEI 9 Unmodified _EENWKREEI_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|22|2|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 616.8006591796875 2 616.798934 1231.58332 NaN NaN NaN NaN NaN NaN NaN 60.224 1 63.697 63.197 64.197 3.4737 0 0 0 0.39036 1 13302 13302 2.9952 0.93549 1 + 5072 28517 3198 3202 6547 6547 -0.023212827129100333 EENYQVLRF 9 Unmodified _EENYQVLRF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MSMS UPN47_class_I_Rep_3 4 599.2981567382812 2 599.29857 1196.58259 NaN NaN NaN NaN NaN NaN NaN 56.377 1 59.549 59.049 60.049 3.1721 0 0 0 0.37476 1 12955 12955 6.7232 0.99131 1 5073 4713 3199 3203 6548 6548 -0.00784077361981872 EEPHDFPEF 9 Unmodified _EEPHDFPEF_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS UPN48_class_I_Rep_1 5 573.74072265625 2 573.740554 1145.46655 0.45858 0.0002631 -0.10628 -6.0976E-05 0.3523 0.00020213 573.7403893963861 55.193 0.71637 58.701 58.374 59.09 3.5082 109 45 3 0 0 0 0.17468 4 11741 11741;11783;11823;11844 23.148 23.148 1 248660 + 5074 17629 3200 3204 6549;6550;6551;6552 6549 -0.10036020932670908 EEPHDFPEF 9 Unmodified _EEPHDFPEF_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS UPN48_class_I_Rep_2 6 573.7405395507812 2 573.740554 1145.46655 0.60336 0.00034617 -0.25321 -0.00014527 0.35015 0.0002009 573.7403539753624 55.154 0.69975 58.71 58.336 59.036 3.5559 101 39 3 0 0 0 0.25207 2 11738 11646;11738 16.942 2.104 1 325380 + 5075 17629 3200 3204 6553;6554 6554 -0.10036020932670908 EEPHDFPEF 9 Unmodified _EEPHDFPEF_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS UPN48_class_I_Rep_3 7 573.7406005859375 2 573.740554 1145.46655 0.3449 0.00019788 0.11551 6.6273E-05 0.46041 0.00026415 573.7404439204308 55.093 0.81439 58.659 58.299 59.114 3.5653 106 46 3 0 0 0 0.17468 1 11614 11614 23.148 0 1 349770 + 5076 17629 3200 3204 6555 6555 -0.10036020932670908 EEPIDIIKA 9 Unmodified _EEPIDIIKA_ 0 0 0 ENST00000530859.1_1_11:108029671-108040846:-|nuORF;ENSG00000149308|ENST00000278612|NPAT ENST00000530859.1_1_11:108029671-108040846:-|nuORF ENST00000530859.1_1_11:108029671-108040846:-|nuORF MSMS UPN48_class_I_Rep_3 7 514.2870483398438 2 514.28714 1026.55973 NaN NaN NaN NaN NaN NaN NaN 53.165 1 56.748 56.248 57.248 3.5836 0 0 0 0.38784 1 11053 11053 3.5965 0.70727 1 5077 3537 3201 3205 6556 6556 0.04750903520562133 EEPRRKRRVVT 11 Unmodified _EEPRRKRRVVT_ 0 0 0 ENST00000471423.1_1_1:151158258-151162597:-|nuORF;ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENST00000471423.1_1_1:151158258-151162597:-|nuORF ENST00000471423.1_1_1:151158258-151162597:-|nuORF MSMS UPN48_class_I_Rep_2 6 475.95147705078125 3 475.951419 1424.83243 NaN NaN NaN NaN NaN NaN NaN 101.78 1 105.51 105.01 106.01 3.7252 0 0 0 0.38417 1 24133 24133 1.1098 0.33322 1 5078 3987 3202 3206 6557 6557 0.1370052503430088 EEPSLGLWY 9 Unmodified _EEPSLGLWY_ 0 0 0 REV__ENST00000449959.6_1_12:10131945-10147620:+|nuORF REV__ENST00000449959.6_1_12:10131945-10147620:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.2649536132812 2 547.263665 1092.51278 NaN NaN NaN NaN NaN NaN NaN 44.122 1 47.636 47.136 48.136 3.5132 0 0 0 0.34056 1 8361 8361 8.5933 2.8329 1 + 5079 17436 3203 3207 6558 6558 -0.029779560305769337 EEQKEPKME 9 Unmodified _EEQKEPKME_ 0 0 0 nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15 MULTI-MSMS UPN48_class_I_Rep_1 5 574.2691040039062 2 574.268621 1146.52269 0.55878 0.00032089 1.5458 0.0008877 2.1046 0.0012086 574.2687666224151 61.734 0.9295 65.202 64.864 65.793 3.4678 163 84 3 0 0 0 0.49187 1 13926 13926 1.4819 0.28856 1 448730 5080 16711 3204 3208 6559 6559 -0.04471136087499872 EEREKWRRWRQ 11 Unmodified _EEREKWRRWRQ_ 0 0 0 REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|91|1|anti-sense REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|91|1|anti-sense MSMS UPN47_class_I_Rep_1 2 553.3034057617188 3 553.625595 1657.85495 NaN NaN NaN NaN NaN NaN NaN 39.186 1 42.851 42.351 43.351 3.6652 0 0 0 0.38417 1 7635 7635 0 0 1 + 5081 32652 3205 3209 6560 6560 0.05234124431899545 EERERYMSY 9 Unmodified _EERERYMSY_ 0 0 0 ENST00000457147.1_1_10:75013703-75013874:+|nuORF ENST00000457147.1_1_10:75013703-75013874:+|nuORF ENST00000457147.1_1_10:75013703-75013874:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 421.52032470703125 3 421.520522 1261.53974 -0.47781 -0.0002014 0.094821 3.9969E-05 -0.38298 -0.00016144 421.52059925125934 24.387 1.2805 28.117 27.742 29.022 3.7298 253 105 4 0 0 0 0.46434 2 3313 3120;3313 2.4985 2.4985 1 441120 5082 6833 3206 3210 6561;6562 6562 -0.08057215481676394 EERHSRKRPR 10 Unmodified _EERHSRKRPR_ 0 0 0 ENSG00000096070|ENST00000357641|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 MULTI-SECPEP UPN48_class_I_Rep_3 7 451.1938781738281 3 450.920231 1349.73886 0.080699 3.6389E-05 -4.1913 -0.0018899 -4.1106 -0.0018535 450.91831605845437 41.185 0.053638 44.831 44.799 44.853 3.6458 6 4 2 0 0 0 0.84575 1 7406 7406 0.77653 0.078866 1 29975 5083 1422 3207 3211 6563 6563 0.07798225651868052 EERHVHVWF 9 Unmodified _EERHVHVWF_ 0 0 0 HUERS-P3-int_dup170|chr5:138407679-138407882:+|1.1658522120267798|0.0122169488699993|6.58|151.0|9|1|anti-sense HUERS-P3-int_dup170|chr5:138407679-138407882:+|1.1658522120267798|0.0122169488699993|6.58|151.0|9|1|anti-sense HUERS-P3-int_dup170|chr5:138407679-138407882:+|1.1658522120267798|0.0122169488699993|6.58|151.0|9|1|anti-sense MSMS UPN47_class_I_Rep_2 3 619.8060913085938 2 619.806897 1237.59924 NaN NaN NaN NaN NaN NaN NaN 66.617 1 69.876 69.376 70.376 3.2588 0 0 0 0.40038 1 16014 16014 0.6015 0 1 5084 8443 3208 3212 6564 6564 -0.010055316853595286 EERKWTTY 8 Unmodified _EERKWTTY_ 0 0 0 REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|36|1|anti-sense REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_1 2 556.7868041992188 2 556.772188 1111.52982 NaN NaN NaN NaN NaN NaN NaN 35.873 1 39.549 39.049 40.049 3.6762 0 0 0 0.40404 1 6630 6630 5.2307 0.90143 1 + 5085 17332 3209 3213 6565 6565 -0.02148035424761474 EERKWTTY 8 Unmodified _EERKWTTY_ 0 0 0 REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|36|1|anti-sense REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_2 3 556.28515625 2 556.772188 1111.52982 NaN NaN NaN NaN NaN NaN NaN 36.024 1 39.436 38.936 39.936 3.4114 0 0 0 0.40625 1 6710 6710 2.3027 0 1 + 5086 17332 3209 3213 6566 6566 -0.02148035424761474 EERKWTTY 8 Unmodified _EERKWTTY_ 0 0 0 REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|36|1|anti-sense REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.7861328125 2 556.772188 1111.52982 -0.089556 -4.9862E-05 0.57712 0.00032133 0.48757 0.00027146 557.2739421386275 36.496 0.13337 39.743 39.628 39.762 3.247 10 8 2 0 0 0 0.82752 1 6892 6892 2.3027 0 1 31551 + 5087 17332 3209 3213 6567 6567 -0.02148035424761474 EERPSAVTSY 10 Unmodified _EERPSAVTSY_ 0 0 0 REV__ENSG00000167851|ENST00000360141|CD300A REV__ENSG00000167851|ENST00000360141|CD300A MULTI-MSMS UPN47_class_I_Rep_1 2 570.2720947265625 2 569.772385 1137.53022 0.21696 0.00012362 -2.0195 -0.0011506 -1.8025 -0.001027 570.2718867290939 49.756 0.84115 53.415 53.064 53.905 3.6592 71 49 2 0 0 0 0.51003 1 10864 10864 10.824 0.75 1 263680 + 5088 20241 3210 3214 6568 6568 -0.03304660495564349 EERRSTDLQ 9 Unmodified _EERRSTDLQ_ 0 0 0 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 REV__nc|ENSG00000132003|Q9H7M6|ZSWIM4 MULTI-MSMS UPN48_class_I_Rep_3 7 568.302978515625 2 567.280909 1132.54726 0.42392 0.00024048 0.030423 1.7258E-05 0.45435 0.00025774 567.2808548458733 59.651 0.77431 63.168 62.881 63.655 3.5169 140 62 3 0 0 0 0.14216 1 13076 13076 26.268 26.268 1 487470 + 5089 18996 3211 3215 6569 6569 -0.013707398897395251 EERRTRPDL 9 Unmodified _EERRTRPDL_ 0 0 0 REV__ENSG00000180767|ENST00000319340|CHST13 REV__ENSG00000180767|ENST00000319340|CHST13 MSMS UPN46_class_I_Rep_3 1 586.802978515625 2 586.312543 1170.61053 NaN NaN NaN NaN NaN NaN NaN 58.499 1 58.499 57.999 58.999 0 0 0 0 0.39598 1 12878 12878 1.6526 0 1 + 5090 20714 3212 3216 6570 6570 0.03205245618164554 EERVINEEY 9 Unmodified _EERVINEEY_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-MSMS UPN46_class_I_Rep_3 1 590.778564453125 2 590.777667 1179.54078 0.47966 0.00028337 0.21167 0.00012505 0.69133 0.00040842 590.777785378358 38.628 0.5909 38.628 38.379 38.97 0 108 61 3 0 0 0 0.0073203 5 7411 7309;7342;7374;7411;7458 104.48 44.41 1 412230 5091 1601;3938 3213 3217 6571;6572;6573;6574;6575 6574 -0.041806778411455525 EESAVTVMF 9 Oxidation (M) _EESAVTVM(Oxidation (M))F_ EESAVTVM(1)F EESAVTVM(44)F 0 0 1 nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B nc|ENSG00000038274|Q9NZL9-3|MAT2B nc|ENSG00000038274|Q9NZL9-3|MAT2B MULTI-MSMS UPN46_class_I_Rep_3 1 514.7337646484375 2 514.733883 1027.45321 0.2507 0.00012904 0.29345 0.00015105 0.54415 0.00028009 514.7339531754938 61.777 0.44697 61.777 61.62 62.067 0 60 39 2 0 0 0 0.060667 1 13791 13791 44.407 14.182 1 266510 5092 857 3214 3218 6576 6576 15 -0.059415950362335934 EESDLSRQY 9 Unmodified _EESDLSRQY_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MULTI-MSMS UPN47_class_I_Rep_1 2 563.7550659179688 2 563.754192 1125.49383 -0.074344 -4.1912E-05 0.22389 0.00012622 0.14955 8.4308E-05 563.7542473251244 27.082 0.57403 30.848 30.605 31.179 3.7662 77 45 2 0 0 0 0.279 4 3943 3943;3979;3991;4040 15.248 7.9114 1 100420 5093 1169 3215 3219 6577;6578;6579;6580 6577 -0.06389537392283273 EESDLSRQY 9 Unmodified _EESDLSRQY_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MULTI-MSMS UPN47_class_I_Rep_2 3 563.753662109375 2 563.754192 1125.49383 0.046776 2.637E-05 -0.24743 -0.00013949 -0.20065 -0.00011312 563.7540093324546 27.246 0.63335 30.744 30.459 31.093 3.4986 80 52 2 0 0 0 0.1249 2 4050 4010;4050 29.082 7.3349 1 92250 5094 1169 3215 3219 6581;6582 6582 -0.06389537392283273 EESDLSRQY 9 Unmodified _EESDLSRQY_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MULTI-MSMS UPN47_class_I_Rep_3 4 563.7542114257812 2 563.754192 1125.49383 -0.22659 -0.00012774 0.19923 0.00011231 -0.027363 -1.5426E-05 563.7542917368877 27.366 0.53874 30.708 30.433 30.972 3.3422 96 46 3 0 0 0 0.24936 2 4113 4113;4159 17.113 4.0862 1 112610 5095 1169 3215 3219 6583;6584 6583 -0.06389537392283273 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MSMS UPN47_class_I_Rep_1 2 588.3034057617188 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 71.804 1 75.179 74.679 75.679 3.3751 0 0 0 0.072484 1 17529 17529 30.637 10.183 1 5096 5051 3216 3220 6585 6585 0.010714765546708804 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MSMS UPN47_class_I_Rep_1 2 588.3026733398438 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 71.934 1 75.309 74.809 75.809 3.3751 0 0 0 0.072484 1 17569 17569 30.637 10.183 1 5097 5051 3216 3220 6586 6586 0.010714765546708804 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MSMS UPN47_class_I_Rep_1 2 588.3032836914062 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 72.07 1 75.45 74.95 75.95 3.3799 0 0 0 0.22485 1 17612 17612 14.838 4.0143 1 5098 5051 3216 3220 6587 6587 0.010714765546708804 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MULTI-MSMS UPN47_class_I_Rep_2 3 588.804931640625 2 588.30279 1174.59103 0.42879 0.00025226 0.1705 0.00010031 0.59929 0.00035257 588.3028494374221 72.223 0.53033 75.513 75.405 75.935 3.2899 57 46 3 0 0 0 0.11683 3 17694 17674;17694;17724 30.637 10.183 1 113230 5099 5051 3216 3220 6588;6589;6590 6589 0.010714765546708804 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MSMS UPN47_class_I_Rep_2 3 588.3040161132812 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 72.026 1 75.316 74.816 75.816 3.2899 0 0 0 0.15455 1 17636 17636 19.257 5.7491 1 5100 5051 3216 3220 6591 6591 0.010714765546708804 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MSMS UPN47_class_I_Rep_2 3 588.3021240234375 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 72.063 1 75.353 74.853 75.853 3.2899 0 0 0 0.027878 1 17645 17645 47.749 15.443 1 5101 5051 3216 3220 6592 6592 0.010714765546708804 EESFFILKY 9 Unmodified _EESFFILKY_ 0 0 0 nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2 nc|ENSG00000184432|P35606-2|COPB2 nc|ENSG00000184432|P35606-2|COPB2 MULTI-MSMS UPN47_class_I_Rep_3 4 588.3031616210938 2 588.30279 1174.59103 0.45376 0.00026695 -0.03267 -1.922E-05 0.42109 0.00024773 588.3027531825296 72.229 0.69077 75.448 75.192 75.883 3.2188 80 59 3 0 0 0 0.097406 3 17758 17758;17799;17842 34.402 13.948 1 98181 5102 5051 3216 3220 6593;6594;6595 6593 0.010714765546708804 EESGARINI 9 Unmodified _EESGARINI_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;ENST00000498121.1_1_21:47289198-47321357:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_1 2 494.7574462890625 2 494.756538 987.498523 -0.27515 -0.00013613 -0.19892 -9.8418E-05 -0.47407 -0.00023455 494.7564990669278 33.774 0.47208 37.472 37.286 37.758 3.6983 42 32 2 0 0 0 0.36392 3 5999 5955;5999;6018 10.074 4.6271 1 89064 5103 4424;5347 3217 3221 6596;6597;6598 6597 0.004273915411431517 EESGARINI 9 Unmodified _EESGARINI_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;ENST00000498121.1_1_21:47289198-47321357:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_2 3 494.7560729980469 2 494.756538 987.498523 -0.13169 -6.5152E-05 -0.26917 -0.00013317 -0.40086 -0.00019833 494.75637252477287 34.066 0.57046 37.505 37.211 37.782 3.4398 56 37 2 0 0 0 0.42249 2 6078 6078;6152 6.7232 0.99131 1 71255 5104 4424;5347 3217 3221 6599;6600 6599 0.004273915411431517 EESGARINI 9 Unmodified _EESGARINI_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;ENST00000498121.1_1_21:47289198-47321357:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_3 4 494.7568664550781 2 494.756538 987.498523 -0.3504 -0.00017336 -0.37206 -0.00018408 -0.72246 -0.00035744 494.75635266169104 34.276 0.56134 37.55 37.246 37.807 3.2748 55 37 2 0 0 0 0.30034 4 6229 6156;6199;6229;6238 13.906 5.1606 1 69170 5105 4424;5347 3217 3221 6601;6602;6603;6604 6603 0.004273915411431517 EESPLHLNLI 10 Unmodified _EESPLHLNLI_ 0 0 0 REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 583.3186645507812 2 582.816596 1163.61864 0.45529 0.00026535 0.2773 0.00016162 0.73259 0.00042697 582.8166953838535 68.954 0.5123 72.409 72.329 72.841 3.4548 71 36 2 0 0 0 0.32646 2 15974 15974;16029 26.268 2.4784 1 531880 + 5106 31439 3218 3222 6605;6606 6605 0.04337379814887754 EESPLHLNLI 10 Unmodified _EESPLHLNLI_ 0 0 0 REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.8168334960938 2 582.816596 1163.61864 0.48509 0.00028272 0.11641 6.7846E-05 0.6015 0.00035057 582.8165581275153 68.746 0.68723 72.254 71.901 72.589 3.5083 54 23 3 0 0 0 0.21192 2 15876 15838;15876 47.749 3.9763 1 1079300 + 5107 31439 3218 3222 6607;6608 6608 0.04337379814887754 EESPLHLNLI 10 Unmodified _EESPLHLNLI_ 0 0 0 REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.8169555664062 2 582.816596 1163.61864 0.55578 0.00032392 -0.15499 -9.0328E-05 0.40079 0.00023359 582.8164288237307 68.704 0.5359 72.213 71.872 72.408 3.5094 57 31 3 0 0 0 0.3776 2 15776 15739;15776 21.537 2.175 1 385980 + 5108 31439 3218 3222 6609;6610 6610 0.04337379814887754 EESSSETRMVV 11 Unmodified _EESSSETRMVV_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2 MULTI-MSMS UPN47_class_I_Rep_3 4 627.2908935546875 2 627.287542 1252.56053 0.43701 0.00027413 0.73498 0.00046104 1.172 0.00073517 627.2881026248723 63.874 0.85564 67.048 66.83 67.685 3.1741 142 65 3 0 0 0 0.33678 1 15389 15389 12.241 0.74595 1 306590 5109 4681 3219 3223 6611 6611 -0.05564669892692109 EETEGCYI 8 Unmodified _EETEGCYI_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|46|2|anti-sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|46|2|anti-sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_3 7 472.6270446777344 2 472.189308 942.364063 NaN NaN NaN NaN NaN NaN NaN 85.431 1 89.181 88.681 89.681 3.7494 0 0 0 0.40738 1 20257 20257 0.79363 0 1 5110 15488 3220 3224 6612 6612 -0.10942429995793646 EETHSTPQRY 10 Unmodified _EETHSTPQRY_ 0 0 0 L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|136|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|136|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 624.2858276367188 2 624.286191 1246.55783 0.4755 0.00029685 -0.38163 -0.00023825 0.093871 5.8603E-05 624.285867231593 35.167 0.5835 38.682 38.408 38.992 3.5144 102 59 2 0 0 0 0.36464 1 5737 5737 22.736 4.3632 1 182450 5111 13575 3221 3225 6613 6613 -0.05558757235326084 EETHSTPQRY 10 Unmodified _EETHSTPQRY_ 0 0 0 L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|136|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|136|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.2857055664062 2 624.286191 1246.55783 0.49926 0.00031168 -0.56481 -0.0003526 -0.065551 -4.0922E-05 624.2858173831602 34.904 0.71025 38.576 38.335 39.045 3.6721 133 80 2 0 0 0 0.55148 1 5578 5578 5.2969 1.1074 1 191250 5112 13575 3221 3225 6614 6614 -0.05558757235326084 EEVESRAY 8 Unmodified _EEVESRAY_ 0 0 0 ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4 ENSG00000160818|ENST00000368232|GPATCH4 ENSG00000160818|ENST00000368232|GPATCH4 MULTI-MSMS UPN46_class_I_Rep_3 1 491.7283630371094 2 491.727446 981.44034 -0.069725 -3.4286E-05 -0.23723 -0.00011665 -0.30696 -0.00015094 491.72737523515497 25.128 0.16997 25.128 25.053 25.223 0 26 15 2 0 0 0 0.82752 1 3399 3399 11.64 3.047 1 32052 5113 3889 3222 3226 6615 6615 -0.051122901041367186 EEVETFAF 8 Unmodified _EEVETFAF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN46_class_I_Rep_3 1 486.22119140625 2 486.221465 970.428378 0.24094 0.00011715 -0.14079 -6.8456E-05 0.10014 4.8692E-05 486.2212570719126 71.5 0.33394 71.5 71.389 71.723 0 44 31 2 0 0 0 0.82752 2 16455 16455;16498 40.449 25.867 1 213020 5114 1207;1424 3223 3227 6616;6617 6616 -0.05801906847318605 EEVGYAIRF 9 Unmodified _EEVGYAIRF_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MULTI-SECPEP UPN47_class_I_Rep_1 2 541.766845703125 2 542.277106 1082.53966 0.39309 0.00021316 0.61139 0.00033154 1.0045 0.00054471 542.2783630567561 56.495 0.34473 59.953 59.73 60.074 3.4572 30 18 2 0 0 0 0.118 1 12881 12881 10.074 1.4806 1 92602 5115 3192 3224 3228 6618 6618 0.0016915258061089844 EEVHDLERKY 10 Unmodified _EEVHDLERKY_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS UPN47_class_I_Rep_3 4 439.885986328125 3 439.88597 1316.63608 -1.0214 -0.00044931 0.78655 0.00034599 -0.23487 -0.00010332 439.8863628899705 27.344 0.6157 30.687 30.51 31.126 3.3422 69 52 2 0 0 0 0.5617 1 4122 4122 2.6312 1.8547 1 62281 5116 5181 3225 3229 6619 6619 -0.009573246500849564 EEVHDLERKY 10 Unmodified _EEVHDLERKY_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MATCH UPN47_class_I_Rep_1 2 3 439.88597 1316.63608 -0.4196 -0.00018458 0.70468 0.00030998 0.28507 0.0001254 440.2206273119397 26.791 0.38854 30.557 30.387 30.775 3.7662 -0.040026 -4.2553E-05 NaN 2.6312 40 29 2 NaN NaN NaN NaN 0 NaN NaN 0 54577 5117 5181 3225 3229 -0.009573246500849564 EEVHDLERKY 10 Unmodified _EEVHDLERKY_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 439.88597 1316.63608 -0.69402 -0.00030529 0.60984 0.00026826 -0.084176 -3.7028E-05 439.88636566338914 27.048 0.22394 30.547 30.489 30.713 3.4986 -0.049745 -0.00016771 NaN 2.6312 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 58373 5118 5181 3225 3229 -0.009573246500849564 EEVKIVLL 8 Unmodified _EEVKIVLL_ 0 0 0 REV__ZKSCAN3|p.N453Kfs*6|1|0.07|ENSG00000189298|chr6:28366021-28366022|-/A|frameshift_variant REV__ZKSCAN3|p.N453Kfs*6|1|0.07|ENSG00000189298|chr6:28366021-28366022|-/A|frameshift_variant MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 67.726 1 70.918 70.418 71.418 3.1914 0 0 0 0.40581 1 16415 16415 2.8892 0 1 + 5119 21006 3226 3230 6620 6620 0.10660699251184269 EEVLIPDQKY 10 Unmodified _EEVLIPDQKY_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-MSMS UPN46_class_I_Rep_3 1 617.322021484375 2 617.321711 1232.62887 0.57347 0.00035402 0.24351 0.00015032 0.81698 0.00050434 617.3219322381077 53.549 0.32999 53.549 53.328 53.658 0 58 36 2 0 0 0 0.31093 2 11485 11485;11526 29.841 4.8496 1 315690 5120 704 3227 3231 6621;6622 6621 0.021859427494746342 EEVLIPDQKY 10 Unmodified _EEVLIPDQKY_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MSMS UPN47_class_I_Rep_2 3 617.3231201171875 2 617.321711 1232.62887 NaN NaN NaN NaN NaN NaN NaN 49.176 1 52.523 52.023 53.023 3.3465 0 0 0 0.53105 1 10698 10698 7.609 1.4032 1 5121 704 3227 3231 6623 6623 0.021859427494746342 EEVLIPDQKY 10 Unmodified _EEVLIPDQKY_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MSMS UPN47_class_I_Rep_3 4 617.3212890625 2 617.321711 1232.62887 NaN NaN NaN NaN NaN NaN NaN 49.287 1 52.522 52.022 53.022 3.2345 0 0 0 0.53105 1 10790 10790 7.609 0 1 5122 704 3227 3231 6624 6624 0.021859427494746342 EEVLLYAK 8 Unmodified _EEVLLYAK_ 0 0 0 REV__ENST00000547135.5_1_12:49231823-49239549:-|nuORF REV__ENST00000547135.5_1_12:49231823-49239549:-|nuORF MSMS UPN46_class_I_Rep_3 1 482.77008056640625 2 482.771126 963.527698 NaN NaN NaN NaN NaN NaN NaN 65.704 1 65.704 65.204 66.204 0 0 0 0 0.40404 1 14863 14863 5.2307 0 1 + 5123 22940 3228 3232 6625 6625 0.04447535837425676 EEVLRWAES 9 Unmodified _EEVLRWAES_ 0 0 0 REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1 REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS UPN47_class_I_Rep_2 3 559.777587890625 2 559.77747 1117.54039 0.20457 0.00011452 -0.04624 -2.5884E-05 0.15833 8.8632E-05 559.7773581607202 44.899 1.2706 48.255 47.836 49.107 3.3556 203 76 4 0 0 0 0.36392 1 9441 9441 10.074 0.6908 1 986610 + 5124 20119 3229 3233 6626 6626 -0.013680527703400003 EEVVLQQL 8 Unmodified _EEVVLQQL_ 0 0 0 REV__ENST00000414826.1_1_3:175177932-175205321:+|nuORF REV__ENST00000414826.1_1_3:175177932-175205321:+|nuORF MSMS UPN46_class_I_Rep_3 1 479.2660217285156 2 479.266207 956.517862 NaN NaN NaN NaN NaN NaN NaN 74.778 1 74.778 74.278 75.278 0 0 0 0 0.34751 1 17358 17358 22.736 0 1 + 5125 22211 3230 3234 6627 6627 0.03786347832055981 EEVYNSSTG 9 Unmodified _EEVYNSSTG_ 0 0 0 REV__ENSG00000105953.15,OGDH,chr7,+,I6.1,44647760,44656317|42|9.01|1|intron REV__ENSG00000105953.15,OGDH,chr7,+,I6.1,44647760,44656317|42|9.01|1|intron MSMS UPN48_class_I_Rep_1 5 493.2094421386719 2 493.209086 984.40362 NaN NaN NaN NaN NaN NaN NaN 29.302 1 32.852 32.352 33.352 3.5499 0 0 0 0.4007 1 4051 4051 0.52476 0 1 + 5126 18310 3231 3235 6628 6628 -0.08920586720705614 EEVYQYEK 8 Unmodified _EEVYQYEK_ 0 0 0 REV__L1MA3_dup7638|chr15:28607758-28609541:+|1.6535167163404982|0.0414992835222441|5.32|151.0|48|3|sense REV__L1MA3_dup7638|chr15:28607758-28609541:+|1.6535167163404982|0.0414992835222441|5.32|151.0|48|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.2515869140625 2 544.250754 1086.48696 0.059395 3.2326E-05 -0.27177 -0.00014791 -0.21237 -0.00011558 544.2503334034426 42.124 0.51333 45.803 45.549 46.062 3.6792 67 34 3 0 0 0 0.82752 1 8563 8563 2.0598 0 1 98532 + 5127 25105 3232 3236 6629 6629 -0.05282850272851647 EEYAKHNKTSF 11 Unmodified _EEYAKHNKTSF_ 0 0 0 REV__L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|3|1|sense REV__L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 451.8842468261719 3 451.88597 1352.63608 NaN NaN NaN NaN NaN NaN NaN 42.126 1 45.884 45.384 46.384 3.7579 0 0 0 0.38417 1 7763 7763 3.5927 0.74939 1 + 5128 24586 3233 3237 6630 6630 -0.026133246501103713 EEYLILEKY 9 Unmodified _EEYLILEKY_ 0 0 0 ENSG00000074966.11,TXK,chr4,-,I8.1,48089825,48094076|67|8.78|2|intron;ENSG00000074966.11,TXK,chr4,-,I8.1,48089825,48094076|67|8.78|1|intron;ENST00000510457.1_1_4:48091737-48136211:-|nuORF;ENSG00000074966|ENST00000264316|TXK ENSG00000074966.11,TXK,chr4,-,I8.1,48089825,48094076|67|8.78|2|intron ENSG00000074966.11,TXK,chr4,-,I8.1,48089825,48094076|67|8.78|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 600.3113403320312 2 600.313354 1198.61216 0.52335 0.00031418 -0.23485 -0.00014099 0.2885 0.00017319 600.3124604544464 65.28 0.06678 65.28 65.246 65.312 0 10 7 2 0 0 0 0.21414 1 14752 14752 19.362 6.3195 1 90473 5129 1139 3234 3238 6631 6631 0.02079441863543252 EEYNRSLSG 9 Unmodified _EEYNRSLSG_ 0 0 0 REV__ENSG00000170819|ENST00000302334|BFSP2 REV__ENSG00000170819|ENST00000302334|BFSP2 MSMS UPN47_class_I_Rep_3 4 527.7427978515625 2 527.743628 1053.4727 NaN NaN NaN NaN NaN NaN NaN 24.46 1 27.811 27.311 28.311 3.3509 0 0 0 0.39598 1 3286 3286 1.6526 0.17072 1 + 5130 20381 3235 3239 6632 6632 -0.051895027011369166 EEYQSLIRY 9 Unmodified _EEYQSLIRY_ 0 0 0 ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1 ENST00000463735.1_1_1:161123865-161127131:+|nuORF ENST00000463735.1_1_1:161123865-161127131:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 600.7991943359375 2 600.798403 1199.58225 0.50048 0.00030069 0.0066017 3.9663E-06 0.50709 0.00030466 600.7983549156673 57.182 0.38564 57.182 56.939 57.325 0 62 39 2 0 0 0 0.0070571 4 12493 12458;12493;12499;12533 86.332 46.382 1 245580 5131 3280 3236 3240 6633;6634;6635;6636 6634 -0.00955497081804424 EEYWFHRL 8 Unmodified _EEYWFHRL_ 0 0 0 L1MA3_dup6445|chr11:66201956-66202606:+|1.4850189648933|0.0272323933947914|5.77|151.0|39|3|anti-sense L1MA3_dup6445|chr11:66201956-66202606:+|1.4850189648933|0.0272323933947914|5.77|151.0|39|3|anti-sense L1MA3_dup6445|chr11:66201956-66202606:+|1.4850189648933|0.0272323933947914|5.77|151.0|39|3|anti-sense MSMS UPN47_class_I_Rep_1 2 590.2830810546875 2 590.282723 1178.55089 NaN NaN NaN NaN NaN NaN NaN 51.736 1 55.329 54.829 55.829 3.5932 0 0 0 0.40746 1 11458 11458 0.69038 0.088878 1 5132 9588 3237 3241 6637 6637 -0.031240253252462935 EEYYCLCPI 9 Unmodified _EEYYCLCPI_ 0 0 0 REV__L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|83|3|anti-sense REV__L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|83|3|anti-sense MSMS UPN47_class_I_Rep_1 2 566.7653198242188 2 566.738111 1131.46167 NaN NaN NaN NaN NaN NaN NaN 115.16 1 118.74 118.24 119.24 3.5809 0 0 0 0.38299 1 28483 28483 4.756 0.81161 1 + 5133 29447 3238 3242 6638 6638 -0.09880364391301555 EFAEFRLS 8 Unmodified _EFAEFRLS_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2 MULTI-MSMS UPN47_class_I_Rep_1 2 499.75067138671875 2 499.750724 997.486896 0.15496 7.7441E-05 -1.8397 -0.00091938 -1.6847 -0.00084194 499.7510201149289 56.296 0.54127 59.754 59.476 60.017 3.4572 42 27 2 0 0 0 0.82752 2 12843 12793;12843 6.7232 1.7518 1 98842 + 5134 20538 3239 3243 6639;6640 6640 -0.011948054821914411 EFAEFRLS 8 Unmodified _EFAEFRLS_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2 MULTI-MSMS UPN47_class_I_Rep_2 3 499.7508850097656 2 499.750724 997.486896 0.29814 0.000149 -1.7808 -0.00088994 -1.4826 -0.00074094 499.75077810991974 56.643 0.56363 59.944 59.511 60.075 3.3009 56 34 2 0 0 0 0.82752 2 12889 12889;12957 10.824 3.5347 1 114070 + 5135 20538 3239 3243 6641;6642 6641 -0.011948054821914411 EFAEVAYQL 9 Unmodified _EFAEVAYQL_ 0 0 0 L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|243|3|anti-sense;L1PA6_dup815|chr2:189714968-189718098:+|1.91610006915306|0.1132053707647428|4.08|151.0|187|3|anti-sense;L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|306|3|anti-sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|256|2|anti-sense;L1PA4_dup4936|chr6:110143859-110145745:-|1.1787211238154207|0.1050277565638697|3.49|150.0|120|3|anti-sense;L1PA3_dup7963|chr11:35702779-35708923:+|1.2854097255365469|0.2499459348530521|2.36|151.0|203|1|anti-sense;L1PA3_dup7829|chr11:3897483-3900116:-|2.716662175842979|0.0286319512987412|6.57|151.0|103|1|anti-sense;L1PA2_dup4081|chr13:40828820-40834834:+|1.249905904261159|0.2328733319459985|2.42|151.0|254|2|anti-sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|268|2|anti-sense;L1PA6_dup1902|chr5:37688714-37694840:+|3.649464183151758|0.3026122635179947|3.59|151.0|208|1|anti-sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|243|3|anti-sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|243|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 535.2640991210938 2 535.263665 1068.51278 0.45753 0.0002449 -0.075497 -4.0411E-05 0.38203 0.00020449 535.2635541888602 85.727 0.84288 89.099 88.786 89.629 3.3716 163 101 3 0 0 0 0.095537 1 21579 21579 21.537 3.3906 1 608870 5136 14205 3240 3244 6643 6643 -0.018739560305675695 EFAEVAYQL 9 Unmodified _EFAEVAYQL_ 0 0 0 L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|243|3|anti-sense;L1PA6_dup815|chr2:189714968-189718098:+|1.91610006915306|0.1132053707647428|4.08|151.0|187|3|anti-sense;L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|306|3|anti-sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|256|2|anti-sense;L1PA4_dup4936|chr6:110143859-110145745:-|1.1787211238154207|0.1050277565638697|3.49|150.0|120|3|anti-sense;L1PA3_dup7963|chr11:35702779-35708923:+|1.2854097255365469|0.2499459348530521|2.36|151.0|203|1|anti-sense;L1PA3_dup7829|chr11:3897483-3900116:-|2.716662175842979|0.0286319512987412|6.57|151.0|103|1|anti-sense;L1PA2_dup4081|chr13:40828820-40834834:+|1.249905904261159|0.2328733319459985|2.42|151.0|254|2|anti-sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|268|2|anti-sense;L1PA6_dup1902|chr5:37688714-37694840:+|3.649464183151758|0.3026122635179947|3.59|151.0|208|1|anti-sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|243|3|anti-sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|243|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 535.263665 1068.51278 0.44081 0.00023595 -0.12948 -6.9305E-05 0.31133 0.00016665 535.2634421447378 85.444 0.18726 89.036 88.926 89.114 3.5914 -0.031524 -5.5102E-05 NaN 21.537 47 24 3 NaN NaN NaN NaN 0 NaN NaN 0 138910 5137 14205 3240 3244 -0.018739560305675695 EFCDIFEICD 10 Unmodified _EFCDIFEICD_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|432|3|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|432|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 617.244140625 2 617.243757 1232.47296 0.044853 2.7686E-05 -0.50569 -0.00031213 -0.46084 -0.00028445 617.2434575756607 40.593 0.59809 43.964 43.645 44.243 3.3712 71 42 2 0 0 0 0.56333 1 8034 8034 1.4819 0 1 222630 + 5138 25099 3241 3245 6644 6644 -0.13397587087797547 EFDPHHRIP 9 Unmodified _EFDPHHRIP_ 0 0 0 REV__ENST00000477677.5_1_1:85031687-85040098:-|nuORF REV__ENST00000477677.5_1_1:85031687-85040098:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 574.7883911132812 2 574.285797 1146.55704 0.42496 0.00024405 -0.38342 -0.00022019 0.041541 2.3857E-05 574.2854270778527 52.804 0.43719 56.323 56.089 56.527 3.5192 43 32 2 0 0 0 0.46869 1 11030 11030 3.9444 0.66309 1 120730 + 5139 18625 3242 3246 6645 6645 -0.010375070937243436 EFDPHHRIP 9 Unmodified _EFDPHHRIP_ 0 0 0 REV__ENST00000477677.5_1_1:85031687-85040098:-|nuORF REV__ENST00000477677.5_1_1:85031687-85040098:-|nuORF MSMS UPN48_class_I_Rep_2 6 574.2843017578125 2 574.285797 1146.55704 NaN NaN NaN NaN NaN NaN NaN 52.637 1 56.276 55.776 56.776 3.639 0 0 0 0.38639 1 10954 10954 3.9444 0 1 + 5140 18625 3242 3246 6646 6646 -0.010375070937243436 EFDWKGEFAP 10 Unmodified _EFDWKGEFAP_ 0 0 0 REV__L1MC5_dup11645|chr13:110657020-110658170:+|2.236355460982128|0.3494936283454092|2.68|151.0|44|1|anti-sense REV__L1MC5_dup11645|chr13:110657020-110658170:+|2.236355460982128|0.3494936283454092|2.68|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_1 5 613.2791137695312 2 613.279846 1224.54514 NaN NaN NaN NaN NaN NaN NaN 39.293 1 42.798 42.298 43.298 3.5048 0 0 0 0.53105 1 6920 6920 1.6526 0 1 + 5141 27056 3243 3247 6647 6647 -0.05815168627577805 EFDYEYTE 8 Unmodified _EFDYEYTE_ 0 0 0 nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 MSMS UPN46_class_I_Rep_3 1 548.2112426757812 2 548.211295 1094.40804 NaN NaN NaN NaN NaN NaN NaN 88.074 1 88.074 87.574 88.574 0 0 0 0 0.40798 1 21133 21133 0 0 1 5142 3262 3244 3248 6648 6648 -0.13539122297811446 EFEDLFNF 8 Unmodified _EFEDLFNF_ 0 0 0 REV__L1MA8_dup2826|chr5:21536725-21539370:+|2.170288050096159|0.134286683642456|4.01|151.0|149|2|anti-sense REV__L1MA8_dup2826|chr5:21536725-21539370:+|2.170288050096159|0.134286683642456|4.01|151.0|149|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7341918945312 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 19.796 1 23.446 22.946 23.946 3.6497 0 0 0 0.40746 1 1578 1578 0.69038 0 1 + 5143 25545 3245 3249 6649 6649 -0.07242217955990782 EFEGVLWYG 9 Unmodified _EFEGVLWYG_ 0 0 0 LTR21A_dup54|chrX:74249940-74250412:+|3.4586797297157084|0.2295714140843583|3.91|151.0|23|3|anti-sense LTR21A_dup54|chrX:74249940-74250412:+|3.4586797297157084|0.2295714140843583|3.91|151.0|23|3|anti-sense LTR21A_dup54|chrX:74249940-74250412:+|3.4586797297157084|0.2295714140843583|3.91|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.26220703125 2 550.258382 1098.50221 NaN NaN NaN NaN NaN NaN NaN 63.151 1 66.614 66.114 67.114 3.4625 0 0 0 0.38639 1 14193 14193 3.9444 1.3669 1 5144 15600 3246 3250 6650 6650 -0.04309938685014458 EFEKPQGQLA 10 Unmodified _EFEKPQGQLA_ 0 0 0 REV__ENST00000423432.6_1_X:71483217-71483493:+|nuORF REV__ENST00000423432.6_1_X:71483217-71483493:+|nuORF MSMS UPN48_class_I_Rep_1 5 573.7952270507812 2 573.793121 1145.57169 NaN NaN NaN NaN NaN NaN NaN 51.275 1 54.799 54.299 55.299 3.5246 0 0 0 0.53105 1 10558 10558 1.4819 0.28856 1 + 5145 22252 3247 3251 6651 6651 0.004725202637928305 EFELRLEGY 9 Unmodified _EFELRLEGY_ 0 0 0 nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENSG00000158486|ENST00000698260|DNAH3 nc|ENSG00000158486|Q8TD57-3|DNAH3 nc|ENSG00000158486|Q8TD57-3|DNAH3 MULTI-MSMS UPN46_class_I_Rep_3 1 578.7894287109375 2 578.287671 1154.56079 0.41606 0.0002406 -0.083312 -4.8179E-05 0.33275 0.00019242 578.2876147266239 56.603 0.3166 56.603 56.472 56.789 0 47 36 2 0 0 0 0.35081 1 12388 12388 10.824 0.75 1 171340 5146 16721 3248 3252 6652 6652 -0.010308821105127208 EFFCFYCFC 9 Unmodified _EFFCFYCFC_ 0 0 0 REV__AluSx1_dup97487|chr17:43321153-43321455:+|1.244035913289499|0.1962168034001787|2.66|151.0|15|2|anti-sense REV__AluSx1_dup97487|chr17:43321153-43321455:+|1.244035913289499|0.1962168034001787|2.66|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_2 3 604.7152099609375 2 604.716124 1207.4177 NaN NaN NaN NaN NaN NaN NaN 119.55 1 123.02 122.52 123.52 3.4793 0 0 0 0.40038 1 29287 29287 0.6015 0.076735 1 + 5147 17192 3249 3253 6653 6653 -0.17771672089270396 EFFKEEQF 8 Unmodified _EFFKEEQF_ 0 0 0 ENST00000441832.1_1_2:200800752-200808538:-|nuORF;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5 ENST00000441832.1_1_2:200800752-200808538:-|nuORF ENST00000441832.1_1_2:200800752-200808538:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 552.7578125 2 552.25584 1102.49713 0.52969 0.00029252 -0.087855 -4.8519E-05 0.44183 0.000244 552.2555682129505 64.259 0.38928 67.734 67.523 67.913 3.4743 50 29 2 0 0 0 0.82752 1 14530 14530 16.149 3.1066 1 123340 5148 3976 3250 3254 6654 6654 -0.050022425476072385 EFFKFWKV 8 Unmodified _EFFKFWKV_ 0 0 0 REV__L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|34|1|anti-sense REV__L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_3 4 565.8069458007812 2 565.805303 1129.59605 NaN NaN NaN NaN NaN NaN NaN 28.341 1 31.675 31.175 32.175 3.3337 0 0 0 0.40746 1 4431 4431 0.69038 0 1 + 5149 29198 3251 3255 6655 6655 0.036438252079278755 EFFPQNYF 8 Unmodified _EFFPQNYF_ 0 0 0 ENSG00000100726|ENST00000262319|TELO2 ENSG00000100726|ENST00000262319|TELO2 ENSG00000100726|ENST00000262319|TELO2 MSMS UPN48_class_I_Rep_1 5 546.24365234375 2 546.245275 1090.476 NaN NaN NaN NaN NaN NaN NaN 42.88 1 46.39 45.89 46.89 3.5103 0 0 0 0.40472 1 7984 7984 4.3292 0.38484 1 5150 1529 3252 3256 6656 6656 -0.06562207856495661 EFFRFLNY 8 Unmodified _EFFRFLNY_ 0 0 0 L1MB2_dup8102|chr19:21297999-21298743:+|1.0437772576722686|0.1429058760244482|2.87|150.0|36|1|anti-sense L1MB2_dup8102|chr19:21297999-21298743:+|1.0437772576722686|0.1429058760244482|2.87|150.0|36|1|anti-sense L1MB2_dup8102|chr19:21297999-21298743:+|1.0437772576722686|0.1429058760244482|2.87|150.0|36|1|anti-sense MSMS UPN48_class_I_Rep_1 5 568.2841186523438 2 568.282192 1134.54983 NaN NaN NaN NaN NaN NaN NaN 51.76 1 55.283 54.783 55.783 3.5227 0 0 0 0.39996 1 10708 10708 7.9102 0.62092 1 5151 10298 3253 3257 6657 6657 -0.012062396941473708 EFFSFFHFF 9 Unmodified _EFFSFFHFF_ 0 0 0 REV__AluSx_dup67933|chr10:101811108-101811422:+|1.1144533101527043|0.4410493164456845|1.34|151.0|18|2|anti-sense REV__AluSx_dup67933|chr10:101811108-101811422:+|1.1144533101527043|0.4410493164456845|1.34|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_2 3 627.7881469726562 2 627.784567 1253.55458 NaN NaN NaN NaN NaN NaN NaN 51.574 1 54.912 54.412 55.412 3.3386 0 0 0 0.39326 1 11436 11436 2.3027 0.4585 1 + 5152 17148 3254 3258 6658 6658 -0.06205355551401226 EFFTEPVY 8 Unmodified _EFFTEPVY_ 0 0 0 REV__L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|128|1|anti-sense REV__L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|128|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.2399291992188 2 516.239658 1030.46476 -0.17007 -8.7796E-05 -0.64555 -0.00033326 -0.81562 -0.00042105 516.2393969911899 32.365 0.47429 36.078 35.769 36.244 3.7131 67 38 2 0 0 0 0.82752 1 5514 5514 26.341 11.76 1 90792 + 5153 26152 3255 3259 6659 6659 -0.04925029950618409 EFFTEPVY 8 Unmodified _EFFTEPVY_ 0 0 0 REV__L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|128|1|anti-sense REV__L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|128|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.2396240234375 2 516.239658 1030.46476 -0.31286 -0.00016151 -0.78787 -0.00040673 -1.1007 -0.00056824 516.2392720066159 32.385 0.66321 35.84 35.591 36.254 3.4547 71 47 2 0 0 0 0.82752 1 5664 5664 13.508 4.1248 1 62841 + 5154 26152 3255 3259 6660 6660 -0.04925029950618409 EFFYFCQKK 9 Unmodified _EFFYFCQKK_ 0 0 0 L1MB3_dup430|chr1:51383718-51384290:+|1.8196180646271785|0.0109223032781812|7.38|151.0|38|3|anti-sense L1MB3_dup430|chr1:51383718-51384290:+|1.8196180646271785|0.0109223032781812|7.38|151.0|38|3|anti-sense L1MB3_dup430|chr1:51383718-51384290:+|1.8196180646271785|0.0109223032781812|7.38|151.0|38|3|anti-sense MSMS UPN47_class_I_Rep_3 4 620.2968139648438 2 620.296985 1238.57942 NaN NaN NaN NaN NaN NaN NaN 75.625 1 78.882 78.382 79.382 3.2573 0 0 0 0.4007 1 18770 18770 0.52476 0 1 5155 10429 3256 3260 6661 6661 -0.030330437403335964 EFGDKYIF 8 Unmodified _EFGDKYIF_ 0 0 0 L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|35|2|anti-sense L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|35|2|anti-sense L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|35|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 509.7479553222656 2 509.74765 1017.48075 0.29503 0.00015039 -0.42241 -0.00021532 -0.12738 -6.4932E-05 509.74744037022816 67.398 0.7123 70.85 70.453 71.165 3.4516 76 49 2 0 0 0 0.82752 1 15409 15409 25.399 2.2509 1 191700 5156 9319 3257 3261 6662 6662 -0.02729323713708709 EFHRHRTR 8 Unmodified _EFHRHRTR_ 0 0 0 REV__ENST00000565700.1_1_16:84494217-84494358:-|nuORF REV__ENST00000565700.1_1_16:84494217-84494358:-|nuORF MSMS UPN48_class_I_Rep_2 6 569.8048706054688 2 569.80248 1137.59041 NaN NaN NaN NaN NaN NaN NaN 39.354 1 43.084 42.584 43.584 3.7297 0 0 0 0.40625 1 6972 6972 2.3027 0.24298 1 + 5157 23062 3258 3262 6663 6663 0.027115394688507877 EFHRHRTR 8 Unmodified _EFHRHRTR_ 0 0 0 REV__ENST00000565700.1_1_16:84494217-84494358:-|nuORF REV__ENST00000565700.1_1_16:84494217-84494358:-|nuORF MSMS UPN48_class_I_Rep_3 7 569.8040771484375 2 569.80248 1137.59041 NaN NaN NaN NaN NaN NaN NaN 39.249 1 42.905 42.405 43.405 3.6557 0 0 0 0.40472 1 6841 6841 4.3292 2.0265 1 + 5158 23062 3258 3262 6664 6664 0.027115394688507877 EFILLVYIHS 10 Unmodified _EFILLVYIHS_ 0 0 0 REV__L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|25|2|sense REV__L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 617.3473510742188 2 617.347532 1232.68051 NaN NaN NaN NaN NaN NaN NaN 44.922 1 48.684 48.184 49.184 3.7617 0 0 0 0.53105 1 8618 8618 1.6526 0 1 + 5159 26044 3259 3263 6665 6665 0.07347731234040111 EFINSRPIL 9 Unmodified _EFINSRPIL_ 0 0 0 L1MD2_dup5898|chrX:19821829-19823095:-|2.212396267234728|0.0077105084942133|8.16|151.0|50|3|sense L1MD2_dup5898|chrX:19821829-19823095:-|2.212396267234728|0.0077105084942133|8.16|151.0|50|3|sense L1MD2_dup5898|chrX:19821829-19823095:-|2.212396267234728|0.0077105084942133|8.16|151.0|50|3|sense MSMS UPN48_class_I_Rep_3 7 544.8087768554688 2 544.808574 1087.60259 NaN NaN NaN NaN NaN NaN NaN 67.26 1 70.768 70.268 71.268 3.5077 0 0 0 0.38784 1 15342 15342 3.5965 0.60125 1 5160 12012 3260 3264 6666 6666 0.062297183686723656 EFIPQHVGAF 10 Unmodified _EFIPQHVGAF_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS UPN48_class_I_Rep_3 7 572.7938842773438 2 572.792924 1143.57129 0.52717 0.00030196 -0.67918 -0.00038903 -0.15202 -8.7074E-05 572.792529820199 70.496 0.7744 74.015 73.734 74.508 3.5185 149 80 3 0 0 0 0.50391 1 16347 16347 11.64 3.047 1 236550 5161 678 3261 3265 6667 6667 0.005251453345636037 EFKIPLAIKKE 11 Unmodified _EFKIPLAIKKE_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MSMS UPN48_class_I_Rep_1 5 439.2713317871094 3 439.270984 1314.79112 0.0015937 7.0008E-07 0.78925 0.0003467 0.79085 0.0003474 439.27121725065507 37.352 0.49799 40.859 40.583 41.081 3.507 97 53 3 0 0 0 0.68024 1 6300 6300 0.50596 0.23694 1 175810 5162 2495 3262 3266 6668 6668 0.14631951222258976 EFKKMLGF 8 Unmodified _EFKKMLGF_ 0 0 0 ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 MSMS UPN48_class_I_Rep_2 6 500.2711181640625 2 500.270238 998.525924 NaN NaN NaN NaN NaN NaN NaN 61.647 1 65.121 64.621 65.621 3.4738 0 0 0 0.40364 1 13712 13712 5.7604 0 1 5163 3688 3263 3267 6669 6669 0.026602035478390462 EFKLPKFF 8 Unmodified _EFKLPKFF_ 0 0 0 L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|16|2|sense L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|16|2|sense L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|16|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 528.326904296875 2 528.299853 1054.58515 0.44994 0.00023771 -3.7915 -0.0020031 -3.3416 -0.0017654 528.2976751458237 63.885 0.074242 67.36 67.324 67.399 3.4743 6 4 2 0 0 0 0.72333 1 14390 14390 2.5775 0 1 275880 5164 8781 3264 3268 6670 6670 0.06004422833666467 EFKVAIIVPLH 11 Unmodified _EFKVAIIVPLH_ 0 0 0 AluJo_dup36329|chr9:77990217-77990522:-|1.1376791001130933|0.0079195333949948|7.17|151.0|4|1|sense AluJo_dup36329|chr9:77990217-77990522:-|1.1376791001130933|0.0079195333949948|7.17|151.0|4|1|sense AluJo_dup36329|chr9:77990217-77990522:-|1.1376791001130933|0.0079195333949948|7.17|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 422.5926208496094 3 422.592058 1264.75434 0.089902 3.7992E-05 1.0674 0.00045109 1.1573 0.00048908 422.92684048768393 68.294 0.21208 71.803 71.65 71.863 3.5083 30 19 2 0 0 0 0.67356 1 15744 15744 1.1098 0 1 141160 5165 106 3265 3269 6671 6671 0.13255699396381715 EFKVAIIVPLH 11 Unmodified _EFKVAIIVPLH_ 0 0 0 AluJo_dup36329|chr9:77990217-77990522:-|1.1376791001130933|0.0079195333949948|7.17|151.0|4|1|sense AluJo_dup36329|chr9:77990217-77990522:-|1.1376791001130933|0.0079195333949948|7.17|151.0|4|1|sense AluJo_dup36329|chr9:77990217-77990522:-|1.1376791001130933|0.0079195333949948|7.17|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 422.592058 1264.75434 0.17273 7.2994E-05 0.63525 0.00026845 0.80798 0.00034145 422.9265691016602 68.33 0.57774 71.839 71.757 72.334 3.5094 0.018225 -0.00025824 NaN 1.1098 59 46 2 NaN NaN NaN NaN 0 NaN NaN 0 127130 5166 106 3265 3269 0.13255699396381715 EFLEKVNHQ 9 Unmodified _EFLEKVNHQ_ 0 0 0 REV__ENSG00000164949|ENST00000297596|GEM REV__ENSG00000164949|ENST00000297596|GEM MULTI-MSMS UPN47_class_I_Rep_1 2 572.294189453125 2 572.293288 1142.57202 -0.065175 -3.7299E-05 -0.13463 -7.7049E-05 -0.19981 -0.00011435 572.2931300032361 35.053 0.79919 38.739 38.474 39.273 3.6859 101 57 2 0 0 0 0.47197 1 6361 6361 3.5965 0 1 199520 + 5167 20094 3266 3270 6672 6672 0.006439399836153825 EFLEPPLR 8 Unmodified _EFLEPPLR_ 0 0 0 REV__ENSG00000124602|ENST00000244565|UNC5CL REV__ENSG00000124602|ENST00000244565|UNC5CL MSMS UPN47_class_I_Rep_1 2 500.766357421875 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 111.22 1 114.8 114.3 115.3 3.572 0 0 0 0.40746 1 27428 27428 0.69038 0 1 + 5168 18814 3267 3271 6673 6673 0.039143579315805255 EFLFGTMKRI 10 Unmodified _EFLFGTMKRI_ 0 0 0 L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 414.9082946777344 3 414.561881 1240.66381 -0.067757 -2.809E-05 2.8986 0.0012016 2.8308 0.0011735 414.56281409271793 29.938 0.18015 33.48 33.411 33.591 3.542 26 18 2 0 0 0 0.56078 1 4239 4239 1.5923 0.13716 1 56698 5169 10559 3268 3272 6674 6674 0.053109070764321586 EFLFGTMKRI 10 Unmodified _EFLFGTMKRI_ 0 0 0 L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 414.561881 1240.66381 0.09646 3.9989E-05 2.5597 0.0010611 2.6561 0.0011011 414.5628319388216 29.766 0.12121 33.397 33.347 33.468 3.6316 -0.046664 -0.00013456 NaN 1.5923 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 54589 5170 10559 3268 3272 0.053109070764321586 EFLFGTMKRI 10 Unmodified _EFLFGTMKRI_ 0 0 0 L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|20|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 414.561881 1240.66381 -0.006118 -2.5363E-06 2.6654 0.001105 2.6592 0.0011024 414.56288715337723 29.726 0.19775 33.454 33.417 33.615 3.7286 0.010371 -3.0875E-06 NaN 1.5923 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 66223 5171 10559 3268 3272 0.053109070764321586 EFLHPLQD 8 Unmodified _EFLHPLQD_ 0 0 0 ENST00000586361.5_1_19:36387800-36388662:-|nuORF;ENST00000396901.5_2_19:36387403-36388674:-|nuORF ENST00000586361.5_1_19:36387800-36388662:-|nuORF ENST00000586361.5_1_19:36387800-36388662:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.2496337890625 2 499.750724 997.486896 0.17658 8.8247E-05 -1.0602 -0.00052985 -0.88365 -0.0004416 499.7509134628632 56.718 0.55026 59.89 59.498 60.048 3.1721 44 32 2 0 0 0 0.82752 1 12996 12996 2.0598 0 1 98902 5172 6570 3269 3273 6675 6675 -0.011948054821914411 EFLKLYRSFQF 11 Unmodified _EFLKLYRSFQF_ 0 0 0 L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|41|3|anti-sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|41|3|anti-sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|41|3|anti-sense MSMS UPN46_class_I_Rep_3 1 493.2657775878906 3 493.266122 1476.77654 NaN NaN NaN NaN NaN NaN NaN 77.588 1 77.588 77.088 78.088 0 0 0 0 0.38417 1 18143 18143 0.094841 0 1 5173 9157 3270 3274 6676 6676 0.05721879074098979 EFLLDMIKRF 10 Unmodified _EFLLDMIKRF_ 0 0 0 L1MB7_dup14042|chr10:86496134-86497019:+|2.109299874879376|0.1370421502295081|3.94|151.0|11|1|sense L1MB7_dup14042|chr10:86496134-86497019:+|2.109299874879376|0.1370421502295081|3.94|151.0|11|1|sense L1MB7_dup14042|chr10:86496134-86497019:+|2.109299874879376|0.1370421502295081|3.94|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 437.60931396484375 3 437.90917 1310.70568 NaN NaN NaN NaN NaN NaN NaN 46.896 1 50.415 49.915 50.915 3.5192 0 0 0 0.53105 1 9207 9207 3.0723 0.57378 1 5174 10710 3271 3275 6677 6677 0.06275462764938311 EFLVAHVW 8 Unmodified _EFLVAHVW_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS UPN47_class_I_Rep_3 4 500.7393493652344 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 22.295 1 25.644 25.144 26.144 3.3496 0 0 0 0.40738 1 2643 2643 0.79363 0 1 5175 5795 3272 3276 6678 6678 0.018023926226987896 EFLVLPRQPL 10 Unmodified _EFLVLPRQPL_ 0 0 0 ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3609619140625 2 606.360973 1210.70739 0.32241 0.0001955 0.046872 2.8421E-05 0.36928 0.00022392 606.8627428817268 28.976 0.10253 28.976 28.908 29.01 0 9 6 2 0 0 0 0.56354 1 4526 4526 1.3295 0.63916 1 118400 5176 6816 3273 3277 6679 6679 0.11046839845243994 EFLVLPRQPL 10 Unmodified _EFLVLPRQPL_ 0 0 0 ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3612670898438 2 606.360973 1210.70739 0.36986 0.00022427 0.36317 0.00022021 0.73304 0.00044448 606.3611227498367 31.124 0.070774 31.124 31.07 31.141 0 7 5 2 0 0 0 0.56354 1 5163 5163 1.3295 0.25807 1 107920 5177 6816 3273 3277 6680 6680 0.11046839845243994 EFLVLPRQPL 10 Unmodified _EFLVLPRQPL_ 0 0 0 ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3609008789062 2 606.360973 1210.70739 0.38595 0.00023402 0.44715 0.00027114 0.8331 0.00050516 606.3611450983713 31.885 0.10639 31.885 31.783 31.889 0 14 8 2 0 0 0 0.56354 1 5378 5378 1.3295 0.25807 1 89839 5178 6816 3273 3277 6681 6681 0.11046839845243994 EFLVLPRQPL 10 Unmodified _EFLVLPRQPL_ 0 0 0 ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF ENST00000452065.5_1_2:242208535-242208706:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.863037109375 2 606.360973 1210.70739 0.39367 0.0002387 0.20067 0.00012168 0.59434 0.00036039 606.36100266148 32.177 0.092659 32.177 32.126 32.219 0 14 6 3 0 0 0 0.56354 1 5469 5469 1.3295 0.25807 1 187540 5179 6816 3273 3277 6682 6682 0.11046839845243994 EFLVYHTF 8 Unmodified _EFLVYHTF_ 0 0 0 L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|75|3|anti-sense L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|75|3|anti-sense L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 528.2647094726562 2 528.263468 1054.51238 NaN NaN NaN NaN NaN NaN NaN 76.785 1 76.785 76.285 77.285 0 0 0 0 0.4044 1 17931 17931 4.756 1.7608 1 5180 11120 3274 3278 6683 6683 -0.012693309597807456 EFNQRDEGAA 10 Unmodified _EFNQRDEGAA_ 0 0 0 nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1 nc|ENSG00000131196|O95644-11|NFATC1 nc|ENSG00000131196|O95644-11|NFATC1 MSMS UPN47_class_I_Rep_3 4 568.7517700195312 2 568.751984 1135.48942 NaN NaN NaN NaN NaN NaN NaN 17.502 1 20.86 20.36 21.36 3.3581 0 0 0 0.53105 1 1290 1290 1.8442 0 1 5181 16683 3275 3279 6684 6684 -0.07291001815178788 EFNREERD 8 Unmodified _EFNREERD_ 0 0 0 ENST00000458236.1_1_6:29706493-29716746:-|nuORF ENST00000458236.1_1_6:29706493-29716746:-|nuORF ENST00000458236.1_1_6:29706493-29716746:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.7484741210938 2 547.746702 1093.47885 NaN NaN NaN NaN NaN NaN NaN 28.485 1 31.819 31.319 32.319 3.3337 0 0 0 0.40472 1 4472 4472 4.3292 0.38484 1 5182 6844 3276 3280 6685 6685 -0.06414984469620322 EFNTRQKY 8 Unmodified _EFNTRQKY_ 0 0 0 L1MEc_dup6581|chr5:170284202-170284753:-|1.635766268727052|0.0215170954439201|6.25|151.0|18|3|sense L1MEc_dup6581|chr5:170284202-170284753:-|1.635766268727052|0.0215170954439201|6.25|151.0|18|3|sense L1MEc_dup6581|chr5:170284202-170284753:-|1.635766268727052|0.0215170954439201|6.25|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.272705078125 2 543.272355 1084.53016 -0.43476 -0.00023619 -0.53562 -0.00029099 -0.97037 -0.00052718 543.2722787665717 14.53 0.24067 17.9 17.817 18.058 3.3697 43 28 2 0 0 0 0.82752 1 562 562 3.9444 0.66309 1 28658 5183 13121 3277 3281 6686 6686 -0.008726157049068206 EFPTWVRHRFS 11 Unmodified _EFPTWVRHRFS_ 0 0 0 REV__ENSG00000040933.16,INPP4A,chr2,+,I2.1,98519026,98519146|62|3.89|1|intron REV__ENSG00000040933.16,INPP4A,chr2,+,I2.1,98519026,98519146|62|3.89|1|intron MSMS UPN48_class_I_Rep_1 5 487.9172668457031 3 487.917716 1460.73132 NaN NaN NaN NaN NaN NaN NaN 53.608 1 57.122 56.622 57.622 3.5143 0 0 0 0.38417 1 11269 11269 0.50596 0.051438 1 + 5184 17647 3278 3282 6687 6687 0.01938073331598389 EFPTWVRHRFS 11 Unmodified _EFPTWVRHRFS_ 0 0 0 REV__ENSG00000040933.16,INPP4A,chr2,+,I2.1,98519026,98519146|62|3.89|1|intron REV__ENSG00000040933.16,INPP4A,chr2,+,I2.1,98519026,98519146|62|3.89|1|intron MSMS UPN48_class_I_Rep_2 6 487.91790771484375 3 487.917716 1460.73132 NaN NaN NaN NaN NaN NaN NaN 53.613 1 57.223 56.723 57.723 3.6098 0 0 0 0.38417 1 11254 11254 1.0136 0.31591 1 + 5185 17647 3278 3282 6688 6688 0.01938073331598389 EFPTWVRHRFS 11 Unmodified _EFPTWVRHRFS_ 0 0 0 REV__ENSG00000040933.16,INPP4A,chr2,+,I2.1,98519026,98519146|62|3.89|1|intron REV__ENSG00000040933.16,INPP4A,chr2,+,I2.1,98519026,98519146|62|3.89|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 487.9171447753906 3 487.917716 1460.73132 0.089865 4.3847E-05 -0.62085 -0.00030292 -0.53098 -0.00025907 487.9174019578365 53.607 0.47247 57.19 56.93 57.403 3.5836 53 36 2 0 0 0 0.67462 1 11179 11179 1.0136 0.50762 1 133060 + 5186 17647 3278 3282 6689 6689 0.01938073331598389 EFPYPQRR 8 Unmodified _EFPYPQRR_ 0 0 0 REV__ENSG00000181035|ENST00000318596|SLC25A42 REV__ENSG00000181035|ENST00000318596|SLC25A42 MSMS UPN47_class_I_Rep_3 4 546.7811889648438 2 546.78289 1091.55123 NaN NaN NaN NaN NaN NaN NaN 67.106 1 70.297 69.797 70.797 3.1914 0 0 0 0.40625 1 16228 16228 2.3027 0.4585 1 + 5187 20723 3279 3283 6690 6690 0.009113943946204017 EFRKNFYL 8 Unmodified _EFRKNFYL_ 0 0 0 L1MC3_dup11056|chr15:72746768-72747719:+|1.2523992111047912|0.13066942285289|3.26|150.0|58|3|anti-sense L1MC3_dup11056|chr15:72746768-72747719:+|1.2523992111047912|0.13066942285289|3.26|150.0|58|3|anti-sense L1MC3_dup11056|chr15:72746768-72747719:+|1.2523992111047912|0.13066942285289|3.26|150.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 559.1695556640625 2 558.795466 1115.57638 0.46313 0.0002588 0.2419 0.00013517 0.70503 0.00039397 559.2975887646718 77.735 0.052734 81.016 81.003 81.056 3.2816 6 5 2 0 0 0 0.72333 1 19375 19375 4.756 1.8668 1 28400 5188 11295 3280 3284 6691 6691 0.023214491971884854 EFRNYIRN 8 Unmodified _EFRNYIRN_ 0 0 0 ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-3|SPINK5 ENSG00000133710|ENST00000256084|SPINK5 ENSG00000133710|ENST00000256084|SPINK5 MSMS UPN48_class_I_Rep_2 6 556.2877807617188 2 556.285797 1110.55704 NaN NaN NaN NaN NaN NaN NaN 62.745 1 66.218 65.718 66.718 3.4738 0 0 0 0.40625 1 14049 14049 2.3027 1.1094 1 5189 2814 3281 3285 6692 6692 0.00618492906278334 EFRRRRLQ 8 Unmodified _EFRRRRLQ_ 0 0 0 AluSx_dup97025|chr17:30713159-30713470:+|1.9267630004438936|0.0119405631503483|7.33|151.0|10|3|sense AluSx_dup97025|chr17:30713159-30713470:+|1.9267630004438936|0.0119405631503483|7.33|151.0|10|3|sense AluSx_dup97025|chr17:30713159-30713470:+|1.9267630004438936|0.0119405631503483|7.33|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 580.8411254882812 2 580.841605 1159.66866 NaN NaN NaN NaN NaN NaN NaN 39.125 1 39.125 38.625 39.625 0 0 0 0 0.40604 1 7499 7499 2.5775 0 1 5190 306 3282 3286 6693 6693 0.09520972054087906 EFTITSEFCT 10 Unmodified _EFTITSEFCT_ 0 0 0 L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|117|1|anti-sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|117|1|anti-sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|117|1|anti-sense MSMS UPN47_class_I_Rep_3 4 589.259765625 2 589.257722 1176.50089 NaN NaN NaN NaN NaN NaN NaN 49.845 1 53.071 52.571 53.571 3.2262 0 0 0 0.53105 1 10960 10960 3.2813 0.78282 1 5191 9537 3283 3287 6694 6694 -0.08029940836058813 EFTNLKFYF 9 Unmodified _EFTNLKFYF_ 0 0 0 L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|71|3|anti-sense L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|71|3|anti-sense L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|71|3|anti-sense MSMS UPN48_class_I_Rep_3 7 604.8019409179688 2 604.802957 1207.59136 NaN NaN NaN NaN NaN NaN NaN 43.136 1 46.776 46.276 47.276 3.64 0 0 0 0.38478 1 7991 7991 4.3292 1.0479 1 5192 13392 3284 3288 6695 6695 -0.0041310372548650776 EFTQPYVFD 9 Unmodified _EFTQPYVFD_ 0 0 0 PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|16|1|sense PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|16|1|sense PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|16|1|sense MSMS UPN47_class_I_Rep_3 4 573.279052734375 2 573.261122 1144.50769 NaN NaN NaN NaN NaN NaN NaN 73.329 1 76.566 76.066 77.066 3.2363 0 0 0 0.38916 1 18103 18103 3.2813 0.28607 1 5193 16882 3285 3289 6696 6696 -0.05878259893188442 EFVAKGHLF 9 Unmodified _EFVAKGHLF_ 0 0 0 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 MULTI-MSMS UPN48_class_I_Rep_1 5 524.28466796875 2 524.284734 1046.55492 0.29515 0.00015474 -0.2913 -0.00015272 0.0038469 2.0169E-06 524.2844819266954 44.57 0.54247 48.083 47.719 48.262 3.5132 49 37 2 0 0 0 0.13631 1 8488 8488 26.884 13.376 1 137500 5194 2679 3286 3290 6697 6697 0.03350064168466815 EFVAKGHLF 9 Unmodified _EFVAKGHLF_ 0 0 0 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 MSMS UPN48_class_I_Rep_2 6 524.2847900390625 2 524.284734 1046.55492 NaN NaN NaN NaN NaN NaN NaN 44.246 1 48.007 47.507 48.507 3.7617 0 0 0 0.031663 1 8411 8411 43.858 16.975 1 5195 2679 3286 3290 6698 6698 0.03350064168466815 EFVAKGHLF 9 Unmodified _EFVAKGHLF_ 0 0 0 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 MULTI-MSMS UPN48_class_I_Rep_3 7 524.2849731445312 2 524.284734 1046.55492 0.34901 0.00018298 -0.032457 -1.7017E-05 0.31656 0.00016597 524.284682346992 44.454 0.69885 48.092 47.685 48.383 3.6372 80 47 2 0 0 0 0.21527 1 8420 8420 19.257 11.347 1 119530 5196 2679 3286 3290 6699 6699 0.03350064168466815 EFVETLKKI 9 Unmodified _EFVETLKKI_ 0 0 0 ENSG00000214367.9,HAUS3,chr4,-,I2.1,2239044,2240037|30|9.03|1|intron;nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3 ENSG00000214367.9,HAUS3,chr4,-,I2.1,2239044,2240037|30|9.03|1|intron ENSG00000214367.9,HAUS3,chr4,-,I2.1,2239044,2240037|30|9.03|1|intron MSMS UPN48_class_I_Rep_1 5 553.8274536132812 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 62.789 1 66.252 65.752 66.752 3.4625 0 0 0 0.38639 1 14081 14081 3.9444 0 1 5197 5614 3287 3291 6700 6700 0.08971755825677974 EFVLDTNPHTA 11 Unmodified _EFVLDTNPHTA_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MSMS UPN48_class_I_Rep_3 7 621.96435546875 2 622.30131 1242.58807 NaN NaN NaN NaN NaN NaN NaN 32.751 1 36.441 35.941 36.941 3.6896 0 0 0 0.38417 1 5013 5013 1.1933 0 1 + 5198 17920 3288 3292 6701 6701 -0.023523985701331185 EFVRTAEKF 9 Unmodified _EFVRTAEKF_ 0 0 0 ENSG00000164221|ENST00000379611|CCDC112 ENSG00000164221|ENST00000379611|CCDC112 ENSG00000164221|ENST00000379611|CCDC112 MULTI-MSMS UPN48_class_I_Rep_2 6 563.7823486328125 2 563.798206 1125.58186 0.50481 0.00028461 1.2368 0.00069729 1.7416 0.0009819 564.301878051299 67.476 0.02536 70.973 70.952 70.977 3.4964 4 2 2 0 0 0 0.46434 1 15496 15496 4.3292 0 1 71970 5199 4097 3289 3293 6702 6702 0.024091279889944417 EFWHYSFF 8 Unmodified _EFWHYSFF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MSMS UPN48_class_I_Rep_2 6 581.7538452148438 2 581.753267 1161.49198 NaN NaN NaN NaN NaN NaN NaN 23.844 1 27.484 26.984 27.984 3.6397 0 0 0 0.40746 1 2668 2668 0.69038 0 1 5200 4968 3290 3294 6703 6703 -0.0823050161957326 EFYFGPLI 8 Unmodified _EFYFGPLI_ 0 0 0 L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|40|1|anti-sense L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|40|1|anti-sense L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|40|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 493.7874450683594 2 493.255111 984.49567 0.27137 0.00013385 1.3969 0.00068903 1.6683 0.00082288 493.2557463014879 109.37 0.082794 112.9 112.87 112.95 3.5347 12 10 2 0 0 0 0.72333 1 26859 26859 2.5775 0.27475 1 802910 5201 10220 3291 3295 6704 6704 0.0028016815430191855 EFYHRYKK 8 Unmodified _EFYHRYKK_ 0 0 0 L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|28|1|sense L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|28|1|sense L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|28|1|sense MSMS UPN48_class_I_Rep_1 5 586.1892700195312 2 585.806365 1169.59818 NaN NaN NaN NaN NaN NaN NaN 114.62 1 118.25 117.75 118.75 3.6301 0 0 0 0.40746 1 27865 27865 0.69038 0.088878 1 5202 14760 3292 3296 6705 6705 0.02016253945726021 EFYPVPPPY 9 Unmodified _EFYPVPPPY_ 0 0 0 ENSG00000102471|ENST00000218652|NDFIP2 ENSG00000102471|ENST00000218652|NDFIP2 ENSG00000102471|ENST00000218652|NDFIP2 MSMS UPN47_class_I_Rep_2 3 554.6862182617188 2 554.771126 1107.5277 NaN NaN NaN NaN NaN NaN NaN 19.139 1 22.528 22.028 23.028 3.3898 0 0 0 0.39518 1 1748 1748 1.8442 0.36234 1 5203 1616 3293 3297 6706 6706 -0.021764641625850345 EFYRWTWS 8 Unmodified _EFYRWTWS_ 0 0 0 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 MSMS UPN47_class_I_Rep_3 4 587.7454223632812 2 587.769448 1173.52434 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.08 116.58 117.58 3.4963 0 0 0 0.40604 1 27866 27866 2.5775 0 1 5204 2247 3294 3298 6707 6707 -0.055477142165727855 EFYSGSHFF 9 Unmodified _EFYSGSHFF_ 0 0 0 REV__L1ME2z_dup2449|chr6:75655300-75655781:-|1.4930790439475912|0.044356355737627|5.07|151.0|31|3|anti-sense REV__L1ME2z_dup2449|chr6:75655300-75655781:-|1.4930790439475912|0.044356355737627|5.07|151.0|31|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.740478515625 2 560.740357 1119.46616 0.60241 0.00033779 -0.24526 -0.00013752 0.35715 0.00020027 560.7400808505859 54.623 0.80239 58.205 57.916 58.718 3.5817 120 50 3 0 0 0 0.41259 1 11513 11513 7.2892 0 1 302520 + 5205 27913 3295 3299 6708 6708 -0.08879395861845296 EGAHVSCYS 9 Unmodified _EGAHVSCYS_ 0 0 0 CHRDL2|p.R73S|1|0.04|ENSG00000054938|chr11:74713458-74713458|G/T|missense_variant CHRDL2|p.R73S|1|0.04|ENSG00000054938|chr11:74713458-74713458|G/T|missense_variant CHRDL2|p.R73S|1|0.04|ENSG00000054938|chr11:74713458-74713458|G/T|missense_variant MSMS UPN47_class_I_Rep_2 3 476.6947326660156 2 476.695092 951.375631 NaN NaN NaN NaN NaN NaN NaN 105.92 1 109.46 108.96 109.96 3.5345 0 0 0 0.38478 1 25675 25675 4.3292 1.7518 1 5206 622 3296 3300 6709 6709 -0.10200188181784142 EGCQKLQLWV 10 Unmodified _EGCQKLQLWV_ 0 0 0 REV__L1MDa_dup2963|chr7:139906356-139908345:-|2.482251122661592|0.0898937598954322|4.79|151.0|1|1|sense REV__L1MDa_dup2963|chr7:139906356-139908345:-|2.482251122661592|0.0898937598954322|4.79|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 401.8777770996094 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 15.964 1 19.351 18.851 19.851 3.3864 0 0 0 0.53105 1 944 944 0.13989 0 1 + 5207 27516 3297 3301 6710 6710 0.018577436626628696 EGDEEEDDYD 10 Unmodified _EGDEEEDDYD_ 0 0 0 ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF ENSG00000110066|ENST00000304363|KMT5B ENSG00000110066|ENST00000304363|KMT5B MSMS UPN48_class_I_Rep_1 5 405.7170104980469 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 40.466 1 43.971 43.471 44.471 3.5048 0 0 0 0.53105 1 7265 7265 0.15932 0.064481 1 5208 1926 3298 3302 6711 6711 -0.22511034967214982 EGDIRMEFCL 10 Unmodified _EGDIRMEFCL_ 0 0 0 Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|18|1|sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|18|1|sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|18|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 405.2998352050781 3 404.851103 1211.53148 -1.4521 -0.0005879 0.25129 0.00010173 -1.2009 -0.00048617 404.8511630215967 20.037 0.26096 23.388 23.284 23.545 3.3514 33 24 2 0 0 0 0.84575 1 1967 1967 3.3196 0 1 34035 5209 33246 3299 3303 6712 6712 -0.06582485722651654 EGDLAQIVAAF 11 Unmodified _EGDLAQIVAAF_ 0 0 0 REV__ENST00000531733.1_1_8:11666026-11667401:+|nuORF REV__ENST00000531733.1_1_8:11666026-11667401:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.2957763671875 2 567.295496 1132.57644 NaN NaN NaN NaN NaN NaN NaN 85.764 1 89.379 88.879 89.879 3.6153 0 0 0 0.22906 1 21416 21416 16.149 0.30192 1 + 5210 17895 3300 3304 6713 6713 0.015454044065336348 EGDLYGLHFG 10 Unmodified _EGDLYGLHFG_ 0 0 0 REV__nc|ENSG00000108828|Q99536-2|VAT1 REV__nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS UPN47_class_I_Rep_1 2 554.2578125 2 554.258914 1106.50327 0.41354 0.00022921 -0.19906 -0.00011033 0.21448 0.00011888 554.2587116677233 62.34 0.67315 65.708 65.411 66.084 3.3681 79 43 3 0 0 0 0.54466 1 14696 14696 6.2058 0 1 145810 + 5211 18395 3301 3305 6714 6714 -0.045717243161107035 EGDLYGLHFG 10 Unmodified _EGDLYGLHFG_ 0 0 0 REV__nc|ENSG00000108828|Q99536-2|VAT1 REV__nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS UPN47_class_I_Rep_2 3 554.2591552734375 2 554.258914 1106.50327 0.43342 0.00024023 -0.29165 -0.00016165 0.14177 7.8577E-05 554.2587081604878 62.606 0.71838 65.862 65.539 66.258 3.2558 73 45 2 0 0 0 0.51565 1 14802 14802 10.074 0 1 147230 + 5212 18395 3301 3305 6715 6715 -0.045717243161107035 EGDLYGLHFG 10 Unmodified _EGDLYGLHFG_ 0 0 0 REV__nc|ENSG00000108828|Q99536-2|VAT1 REV__nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS UPN47_class_I_Rep_3 4 554.2590942382812 2 554.258914 1106.50327 0.40592 0.00022498 -0.36508 -0.00020235 0.040839 2.2635E-05 554.2587042424884 62.618 0.60669 65.787 65.533 66.14 3.1698 58 33 2 0 0 0 0.46161 1 14884 14884 14.838 0 1 151770 + 5213 18395 3301 3305 6716 6716 -0.045717243161107035 EGEQIWTI 8 Unmodified _EGEQIWTI_ 0 0 0 REV__L1PA6_dup5235|chr15:55280524-55281117:-|1.4033111144969996|0.0209627362180973|6.06|151.0|16|3|sense REV__L1PA6_dup5235|chr15:55280524-55281117:-|1.4033111144969996|0.0209627362180973|6.06|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 488.3358459472656 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 74.56 1 74.56 74.06 75.06 0 0 0 0 0.40604 1 17301 17301 2.5775 0 1 + 5214 29935 3302 3306 6717 6717 -0.01734511719087095 EGERVLTAMSY 11 Unmodified _EGERVLTAMSY_ 0 0 0 ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL ENSG00000148429|ENST00000609104|USP6NL ENSG00000148429|ENST00000609104|USP6NL MULTI-MSMS UPN47_class_I_Rep_3 4 628.3038940429688 2 628.302995 1254.59144 0.39 0.00024504 1.7555 0.001103 2.1455 0.001348 628.3032866802105 61.136 0.58799 64.301 64.02 64.608 3.1651 98 50 3 0 0 0 0.66277 1 14405 14405 2.086 0.60411 1 213300 5215 3510 3303 3307 6718 6718 -0.02567471787779141 EGFAWHRI 8 Unmodified _EGFAWHRI_ 0 0 0 REV__Charlie1a_dup3219|chr9:137707932-137709232:-|1.2728724759542318|0.0564827807476747|4.49|151.0|46|1|anti-sense REV__Charlie1a_dup3219|chr9:137707932-137709232:-|1.2728724759542318|0.0564827807476747|4.49|151.0|46|1|anti-sense MSMS UPN46_class_I_Rep_3 1 508.2733154296875 2 508.259051 1014.50355 NaN NaN NaN NaN NaN NaN NaN 62.179 1 62.179 61.679 62.679 0 0 0 0 0.40604 1 13889 13889 2.5775 0 1 + 5216 17318 3304 3308 6719 6719 -0.0031225980557110233 EGFFVYVH 8 Unmodified _EGFFVYVH_ 0 0 0 REV__L1MA8_dup2320|chr4:73205325-73206397:+|2.8928785224902427|0.0675145500838453|5.42|151.0|44|1|anti-sense REV__L1MA8_dup2320|chr4:73205325-73206397:+|2.8928785224902427|0.0675145500838453|5.42|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_2 3 499.2414855957031 2 499.242535 996.470518 NaN NaN NaN NaN NaN NaN NaN 30.984 1 34.466 33.966 34.966 3.4821 0 0 0 0.40738 1 5185 5185 0.79363 0.10326 1 + 5217 25541 3305 3309 6720 6720 -0.0278588664829158 EGFRVYWW 8 Unmodified _EGFRVYWW_ 0 0 0 REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A MSMS UPN48_class_I_Rep_1 5 571.77392578125 2 571.774534 1141.53451 NaN NaN NaN NaN NaN NaN NaN 116.2 1 119.83 119.33 120.33 3.6254 0 0 0 0.40738 1 28287 28287 0.79363 0 1 + 5218 18369 3306 3310 6721 6721 -0.030591064913551236 EGFWRRHLFKF 11 Unmodified _EGFWRRHLFKF_ 0 0 0 REV__ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron REV__ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 508.27459716796875 3 508.273722 1521.79934 0.2446 0.00012432 0.76451 0.00038858 1.0091 0.0005129 508.2740862091019 61.65 0.35746 61.65 61.416 61.773 0 51 33 2 0 0 0 0.68081 2 13705 13705;13742 0.45452 0.35968 1 207340 + 5219 19196 3307 3311 6722;6723 6722 0.059309429822405946 EGFWRRHLFKF 11 Unmodified _EGFWRRHLFKF_ 0 0 0 REV__ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron REV__ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron MULTI-SECPEP UPN46_class_I_Rep_3 1 508.35845947265625 3 508.273722 1521.79934 0.24178 0.00012289 0.91943 0.00046732 1.1612 0.00059021 508.6087166222417 60.671 0.088428 60.671 60.625 60.714 0 13 9 2 0 0 0 22.551 1 13472 13472 0.45452 0.35968 1 258710 + 5220 19196 3307 3311 6724 6724 0.059309429822405946 EGGFYWYA 8 Unmodified _EGGFYWYA_ 0 0 0 REV__L1MB7_dup10028|chr8:73867732-73868016:+|1.013658892309962|0.0024052528011912|8.72|150.0|19|3|anti-sense REV__L1MB7_dup10028|chr8:73867732-73868016:+|1.013658892309962|0.0024052528011912|8.72|150.0|19|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.712158203125 2 496.711068 991.407583 NaN NaN NaN NaN NaN NaN NaN 47.971 1 47.971 47.471 48.471 0 0 0 0 0.40604 1 9957 9957 2.5775 0 1 + 5221 26109 3308 3312 6725 6725 -0.08846452436341679 EGGKKEEGQD 10 Unmodified _EGGKKEEGQD_ 0 0 0 L1PA15_dup6690|chr12:118278141-118278805:-|1.2899887724068118|0.0064704441840602|7.64|151.0|4|1|sense L1PA15_dup6690|chr12:118278141-118278805:-|1.2899887724068118|0.0064704441840602|7.64|151.0|4|1|sense L1PA15_dup6690|chr12:118278141-118278805:-|1.2899887724068118|0.0064704441840602|7.64|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 538.7457885742188 2 538.746367 1075.47818 NaN NaN NaN NaN NaN NaN NaN 70.105 1 70.105 69.605 70.605 0 0 0 0 0.53105 1 16095 16095 1.1933 0.23107 1 5222 13968 3309 3313 6726 6726 -0.05653823909324274 EGGVSGKLFF 10 Unmodified _EGGVSGKLFF_ 0 0 0 L1MB3_dup6559|chr7:36551372-36551867:-|1.0374292401802612|0.0068608862745863|7.24|149.0|15|2|sense L1MB3_dup6559|chr7:36551372-36551867:-|1.0374292401802612|0.0068608862745863|7.24|149.0|15|2|sense L1MB3_dup6559|chr7:36551372-36551867:-|1.0374292401802612|0.0068608862745863|7.24|149.0|15|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 521.2901000976562 2 520.7742 1039.53385 0.27428 0.00014284 -0.033934 -1.7672E-05 0.24034 0.00012516 520.773966282004 67.882 0.35549 67.882 67.705 68.061 0 54 35 2 0 0 0 0.84575 1 15509 15509 20.415 2.2682 1 268350 5223 10440 3310 3314 6727 6727 0.01566054068939593 EGHWCCCCC 9 Unmodified _EGHWCCCCC_ 0 0 0 REV__L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|14|1|sense REV__L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 522.1350708007812 2 522.136661 1042.25877 NaN NaN NaN NaN NaN NaN NaN 63.98 1 63.98 63.48 64.48 0 0 0 0 0.4029 1 14377 14377 0 0 1 + 5224 29108 3311 3315 6728 6728 -0.26067032260721135 EGIILTMDML 10 Unmodified _EGIILTMDML_ 0 0 0 NANS|p.T305I|1|0.45|ENSG00000095380|chr9:98082889-98082889|C/T|missense_variant NANS|p.T305I|1|0.45|ENSG00000095380|chr9:98082889-98082889|C/T|missense_variant NANS|p.T305I|1|0.45|ENSG00000095380|chr9:98082889-98082889|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_2 3 568.2889404296875 2 568.290511 1134.56647 0.13306 7.5619E-05 0.12165 6.9135E-05 0.25472 0.00014475 568.2906592393135 43.406 0.75481 46.764 46.443 47.198 3.358 59 46 2 0 0 0 0.56078 1 8932 8932 3.2813 0 1 74100 5225 16612 3312 3316 6729 6729 0.0045675708529415715 EGILNVDPL 9 Unmodified _EGILNVDPL_ 0 0 0 REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF MSMS UPN46_class_I_Rep_3 1 485.26629638671875 2 485.266207 968.517862 NaN NaN NaN NaN NaN NaN NaN 65.128 1 65.128 64.628 65.628 0 0 0 0 0.3377 1 14706 14706 8.7454 0 1 + 5226 22816 3313 3317 6730 6730 0.032343478320512986 EGIQIGSQTI 10 Unmodified _EGIQIGSQTI_ 0 0 0 L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|31|1|sense L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|31|1|sense L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|31|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 523.27978515625 2 523.279846 1044.54514 0.30915 0.00016177 -0.57092 -0.00029875 -0.26178 -0.00013698 523.2794810596099 40.306 0.45728 43.811 43.593 44.05 3.5048 64 35 2 0 0 0 0.48801 1 7206 7206 12.873 2.722 1 141740 5227 13844 3314 3318 6731 6731 0.024648313724583204 EGIQIGSQTI 10 Unmodified _EGIQIGSQTI_ 0 0 0 L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|31|1|sense L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|31|1|sense L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|31|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.2803344726562 2 523.279846 1044.54514 0.33256 0.00017402 -0.36079 -0.00018879 -0.028226 -1.477E-05 523.2795405051729 39.924 0.55501 43.665 43.474 44.029 3.7413 69 54 2 0 0 0 0.50483 1 7163 7163 11.518 2.5416 1 149920 5228 13844 3314 3318 6732 6732 0.024648313724583204 EGKPKRTL 8 Unmodified _EGKPKRTL_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MULTI-MSMS UPN47_class_I_Rep_3 4 464.7817077636719 2 464.782359 927.550165 -0.96563 -0.00044881 -0.35431 -0.00016468 -1.3199 -0.00061348 464.7821158258592 13.102 0.4817 16.476 16.366 16.847 3.3734 95 54 3 0 0 0 0.82752 1 234 234 12.241 4.3305 1 185350 5229 4079 3315 3319 6733 6733 0.08349180025709302 EGKRRASWHY 10 Unmodified _EGKRRASWHY_ 0 0 0 REV__L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|47|2|sense REV__L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|47|2|sense MSMS UPN47_class_I_Rep_3 4 645.3272705078125 2 645.328528 1288.6425 NaN NaN NaN NaN NaN NaN NaN 54.57 1 57.756 57.256 58.256 3.1856 0 0 0 0.53105 1 12402 12402 1.4819 0 1 + 5230 28711 3316 3320 6734 6734 0.009726580919505068 EGLCYLARVLR 11 Unmodified _EGLCYLARVLR_ 0 0 0 L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|117|3|sense L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|117|3|sense L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|117|3|sense MSMS UPN48_class_I_Rep_2 6 646.8624877929688 2 646.860815 1291.70708 NaN NaN NaN NaN NaN NaN NaN 104.59 1 108.29 107.79 108.79 3.6991 0 0 0 0.38417 1 24757 24757 2.9952 0 1 5231 14956 3317 3321 6735 6735 0.0728909685369672 EGLGSFPGGEL 11 Unmodified _EGLGSFPGGEL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MSMS UPN47_class_I_Rep_3 4 531.7587280273438 2 531.758746 1061.50294 0.38816 0.00020641 0.21635 0.00011505 0.60451 0.00032145 531.7587283675742 67.035 0.5644 70.226 70.099 70.664 3.1914 71 42 2 0 0 0 0.37961 1 16250 16250 10.8 1.4164 1 77260 + 5232 19924 3318 3322 6736 6736 -0.025351440359372646 EGLGSFPGGEL 11 Unmodified _EGLGSFPGGEL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MATCH UPN47_class_I_Rep_1 2 2 531.758746 1061.50294 0.31111 0.00016544 0.36186 0.00019242 0.67297 0.00035786 531.7587764694781 66.927 0.52687 70.288 70.052 70.579 3.3611 -0.0044406 2.7944E-05 NaN 10.8 65 42 2 NaN NaN NaN NaN 0 NaN NaN 0 89158 + 5233 19924 3318 3322 -0.025351440359372646 EGLGSFPGGEL 11 Unmodified _EGLGSFPGGEL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 531.758746 1061.50294 0.38816 0.00020641 0.21635 0.00011505 0.60451 0.00032145 531.7587283675742 67.035 0.5644 70.226 70.099 70.664 3.1914 -0.066564 -0.00012681 NaN 10.8 71 42 2 NaN NaN NaN NaN 0 NaN NaN 0 77260 + 5234 19924 3318 3322 -0.025351440359372646 EGLYVMHL 8 Unmodified _EGLYVMHL_ 0 0 0 REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|265|3|anti-sense REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|265|3|anti-sense MSMS UPN46_class_I_Rep_3 1 481.2458190917969 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 27.056 1 27.056 26.556 27.556 0 0 0 0 0.40404 1 3964 3964 5.2307 0.47466 1 + 5235 30517 3319 3323 6737 6737 -0.007929598659416115 EGNRTKTLNEF 11 Unmodified _EGNRTKTLNEF_ 0 0 0 REV__L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|40|1|sense REV__L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|40|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 437.2236022949219 3 436.889603 1307.64698 -0.99971 -0.00043676 0.27461 0.00011998 -0.7251 -0.00031679 436.88972327785507 30.932 0.77813 34.244 33.915 34.693 3.3116 105 62 3 0 0 0 0.65891 1 5240 5240 2.4348 0.35082 1 132500 + 5236 29834 3320 3324 6738 6738 0.00546077724220595 EGPFHLPDLF 10 Unmodified _EGPFHLPDLF_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|308|2|anti-sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|308|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.2929077148438 2 586.292756 1170.57096 0.51709 0.00030316 -0.010788 -6.325E-06 0.5063 0.00029684 586.2925636292705 62.839 0.89818 66.348 65.972 66.87 3.5091 141 64 3 0 0 0 0.56078 1 14142 14142 3.2813 0.28607 1 356540 + 5237 29816 3321 3325 6739 6739 -0.007502743852910498 EGPQEKGPQI 10 Unmodified _EGPQEKGPQI_ 0 0 0 REV__HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|151|2|anti-sense REV__HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|151|2|anti-sense MSMS UPN47_class_I_Rep_3 4 541.7792358398438 2 541.77747 1081.54039 NaN NaN NaN NaN NaN NaN NaN 23.892 1 27.243 26.743 27.743 3.3509 0 0 0 0.53105 1 3116 3116 2.9952 0.26005 1 + 5238 23672 3322 3326 6740 6740 0.0028794722968541464 EGPTHSTFTF 10 Unmodified _EGPTHSTFTF_ 0 0 0 REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 562.2564086914062 2 562.256371 1122.49819 0.44562 0.00025055 -0.13873 -7.8002E-05 0.30689 0.00017255 562.256235846283 50.23 1.1309 53.755 53.347 54.478 3.5246 179 72 4 0 0 0 0.15477 3 10293 10171;10255;10293 65.235 7.513 1 851630 + 5239 20831 3323 3327 6741;6742;6743 6743 -0.058160281787195345 EGPTHSTFTF 10 Unmodified _EGPTHSTFTF_ 0 0 0 REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 562.2566528320312 2 562.256371 1122.49819 0.45287 0.00025463 -0.07538 -4.2383E-05 0.37749 0.00021225 562.2562462320349 49.975 0.98156 53.67 53.305 54.287 3.6946 163 63 3 0 0 0 0.21236 5 10245 10077;10119;10160;10202;10245 58.679 7.049 1 895020 + 5240 20831 3323 3327 6744;6745;6746;6747;6748 6748 -0.058160281787195345 EGPTHSTFTF 10 Unmodified _EGPTHSTFTF_ 0 0 0 REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 561.8534545898438 2 562.256371 1122.49819 0.45287 0.00025463 -0.07538 -4.2383E-05 0.37749 0.00021225 562.2562462320349 49.975 0.98156 53.67 53.305 54.287 3.6946 163 63 3 0 0 0 0.84575 1 10232 10232 41.84 5.3334 1 895020 + 5241 20831 3323 3327 6749 6749 -0.058160281787195345 EGPTHSTFTF 10 Unmodified _EGPTHSTFTF_ 0 0 0 REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 562.2565307617188 2 562.256371 1122.49819 0.32062 0.00018027 0.0036305 2.0413E-06 0.32425 0.00018231 562.2563095045498 50.105 0.96913 53.726 53.375 54.345 3.621 147 60 3 0 0 0 0.21236 5 10183 10060;10081;10099;10183;10225 58.679 7.049 1 765940 + 5242 20831 3323 3327 6750;6751;6752;6753;6754 6753 -0.058160281787195345 EGPWQWLW 8 Unmodified _EGPWQWLW_ 0 0 0 L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|332|3|anti-sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|332|3|anti-sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|332|3|anti-sense MSMS UPN46_class_I_Rep_3 1 551.2618408203125 2 551.261259 1100.50797 NaN NaN NaN NaN NaN NaN NaN 25.551 1 25.551 25.051 26.051 0 0 0 0 0.40746 1 3523 3523 0.69038 0 1 5243 15465 3324 3328 6755 6755 -0.03826795382678938 EGQALLHTAPL 11 Unmodified _EGQALLHTAPL_ 0 0 0 ENST00000359450.6_1_17:27404640-27404928:-|nuORF ENST00000359450.6_1_17:27404640-27404928:-|nuORF ENST00000359450.6_1_17:27404640-27404928:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 575.3167724609375 2 575.316763 1148.61897 0.26337 0.00015152 -0.085683 -4.9295E-05 0.17768 0.00010222 575.3168534679587 51.557 0.3925 55.15 54.917 55.31 3.5933 32 20 2 0 0 0 0.62748 1 11390 11390 4.5289 1.2476 1 76421 5244 6308 3325 3329 6756 6756 0.050607995347718315 EGQALLHTAPL 11 Unmodified _EGQALLHTAPL_ 0 0 0 ENST00000359450.6_1_17:27404640-27404928:-|nuORF ENST00000359450.6_1_17:27404640-27404928:-|nuORF ENST00000359450.6_1_17:27404640-27404928:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 575.316763 1148.61897 0.51537 0.0002965 -0.45264 -0.00026041 0.062729 3.6089E-05 575.3164419186711 51.778 0.27244 55.111 55.001 55.274 3.3332 0.01959 -0.00024331 NaN 4.5289 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 93316 5245 6308 3325 3329 0.050607995347718315 EGQALLHTAPL 11 Unmodified _EGQALLHTAPL_ 0 0 0 ENST00000359450.6_1_17:27404640-27404928:-|nuORF ENST00000359450.6_1_17:27404640-27404928:-|nuORF ENST00000359450.6_1_17:27404640-27404928:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 575.316763 1148.61897 0.53197 0.00030605 -4.353 -0.0025044 -3.821 -0.0021983 575.3149936529067 51.808 0.16053 55.013 54.911 55.072 3.2055 -0.078208 -0.0047312 NaN 4.5289 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 45077 5246 6308 3325 3329 0.050607995347718315 EGQQPCLVW 9 Unmodified _EGQQPCLVW_ 0 0 0 REV__ENST00000528902.1_1_17:72957966-72959197:-|nuORF REV__ENST00000528902.1_1_17:72957966-72959197:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 530.2499389648438 2 530.250034 1058.48552 0.33003 0.000175 -0.23285 -0.00012347 0.097178 5.1529E-05 530.2498814869879 48.469 1.014 52.187 51.68 52.694 3.7175 121 70 2 0 0 0 0.45688 1 9761 9761 4.756 1.1595 1 234230 + 5247 22833 3326 3330 6757 6757 -0.04138762842603683 EGQQPCLVW 9 Unmodified _EGQQPCLVW_ 0 0 0 REV__ENST00000528902.1_1_17:72957966-72959197:-|nuORF REV__ENST00000528902.1_1_17:72957966-72959197:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 530.2500610351562 2 530.250034 1058.48552 0.40315 0.00021377 -0.33319 -0.00017667 0.069966 3.71E-05 530.249841666249 48.616 0.97794 52.245 51.796 52.773 3.6291 119 74 2 0 0 0 0.48643 1 9774 9774 2.0598 0.21551 1 396390 + 5248 22833 3326 3330 6758 6758 -0.04138762842603683 EGRHNWNC 8 Unmodified _EGRHNWNC_ 0 0 0 REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|28|3|sense REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 508.2761535644531 2 508.211775 1014.409 NaN NaN NaN NaN NaN NaN NaN 49.965 1 49.965 49.465 50.465 0 0 0 0 0.40404 1 10530 10530 5.2307 2.6532 1 + 5249 27228 3327 3331 6759 6759 -0.09763141619225735 EGRHNWNC 8 Unmodified _EGRHNWNC_ 0 0 0 REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|28|3|sense REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 508.2109680175781 2 508.211775 1014.409 NaN NaN NaN NaN NaN NaN NaN 71.694 1 71.694 71.194 72.194 0 0 0 0 0.40604 1 16531 16531 2.5775 0 1 + 5250 27228 3327 3331 6760 6760 -0.09763141619225735 EGRHNWNC 8 Unmodified _EGRHNWNC_ 0 0 0 REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|28|3|sense REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 508.21221923828125 2 508.211775 1014.409 NaN NaN NaN NaN NaN NaN NaN 71.884 1 71.884 71.384 72.384 0 0 0 0 0.40604 1 16586 16586 2.5775 0 1 + 5251 27228 3327 3331 6761 6761 -0.09763141619225735 EGRLPGECEKH 11 Unmodified _EGRLPGECEKH_ 0 0 0 REV__L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|61|2|sense REV__L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|61|2|sense MSMS UPN48_class_I_Rep_1 5 627.8002319335938 2 627.798411 1253.58227 NaN NaN NaN NaN NaN NaN NaN 49.404 1 52.929 52.429 53.429 3.5246 0 0 0 0.38417 1 9980 9980 0.96228 0.36078 1 + 5252 29930 3328 3332 6762 6762 -0.034378203534515706 EGRNIRGE 8 Unmodified _EGRNIRGE_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|198|3|sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|198|3|sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|198|3|sense MSMS UPN48_class_I_Rep_1 5 465.7419128417969 2 465.741222 929.467892 NaN NaN NaN NaN NaN NaN NaN 75.096 1 78.586 78.086 79.086 3.49 0 0 0 0.40157 1 17775 17775 7.2892 0.56607 1 5253 8032 3329 3333 6763 6763 0.00033657946767107205 EGRRHVVY 8 Unmodified _EGRRHVVY_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G3227Rfs*2|1|0.05|ENSG00000154358|chr1:228287827-228287828|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.K4933Qfs*33|1|0.05|ENSG00000154358|chr1:228321637-228321638|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS UPN46_class_I_Rep_3 1 508.3586120605469 2 508.275232 1014.53591 NaN NaN NaN NaN NaN NaN NaN 66.484 1 66.484 65.984 66.984 0 0 0 0 0.36148 1 15087 15087 19.439 7.7987 1 5254 3669 3330 3334 6764 6764 0.029225275974113174 EGRRHVVY 8 Unmodified _EGRRHVVY_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G3227Rfs*2|1|0.05|ENSG00000154358|chr1:228287827-228287828|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.K4933Qfs*33|1|0.05|ENSG00000154358|chr1:228321637-228321638|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS UPN46_class_I_Rep_3 1 508.2762756347656 2 508.275232 1014.53591 NaN NaN NaN NaN NaN NaN NaN 66.669 1 66.669 66.169 67.169 0 0 0 0 0.33946 1 15139 15139 24.674 3.8027 1 5255 3669 3330 3334 6765 6765 0.029225275974113174 EGRRYHIY 8 Unmodified _EGRRYHIY_ 0 0 0 ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1;ENST00000471332.1_1_3:403392-405149:+|nuORF ENSG00000134121|ENST00000256509|CHL1 ENSG00000134121|ENST00000256509|CHL1 MULTI-MSMS UPN47_class_I_Rep_3 4 547.2786865234375 2 547.280515 1092.54648 0.51906 0.00028407 -0.42089 -0.00023035 0.098169 5.3726E-05 547.28025611672 50.87 0.31206 54.086 53.953 54.265 3.2163 20 13 2 0 0 0 0.82752 1 11273 11273 2.3027 0 1 53908 5256 2834 3331 3335 6766 6766 0.003905102518501735 EGSDWPFLFF 10 Unmodified _EGSDWPFLFF_ 0 0 0 HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|186|3|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|186|3|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|186|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 622.7843017578125 2 622.784764 1243.55498 0.33765 0.00021028 -0.44441 -0.00027677 -0.10676 -6.6489E-05 622.7844545722603 51.925 0.56109 55.518 55.162 55.723 3.5932 58 35 2 0 0 0 0.56309 2 11435 11435;11524 1.6526 0 1 134680 5257 8273 3332 3336 6767;6768 6767 -0.05705980622201423 EGSDWPFLFF 10 Unmodified _EGSDWPFLFF_ 0 0 0 HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|186|3|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|186|3|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|186|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 623.2858276367188 2 622.784764 1243.55498 0.51561 0.00032111 -0.83805 -0.00052192 -0.32244 -0.00020081 622.7843043669955 52.17 0.53415 55.503 55.17 55.704 3.3332 53 34 2 0 0 0 0.56309 1 11616 11616 1.6526 0 1 198870 5258 8273 3332 3336 6769 6769 -0.05705980622201423 EGSPVAQHPTL 11 Unmodified _EGSPVAQHPTL_ 0 0 0 REV__nc|ENSG00000196150|P15622-2|ZNF250 REV__nc|ENSG00000196150|P15622-2|ZNF250 MSMS UPN48_class_I_Rep_3 7 568.29248046875 2 568.290745 1134.56694 NaN NaN NaN NaN NaN NaN NaN 40.231 1 43.882 43.382 44.382 3.6509 0 0 0 0.38417 1 7130 7130 1.0715 0.10919 1 + 5259 21018 3333 3337 6770 6770 0.005036361209931783 EGSTKDCNAYI 11 Unmodified _EGSTKDCNAYI_ 0 0 0 REV__L1MC4_dup4106|chr3:11437584-11437942:-|1.769438195271959|0.0206848214554069|6.42|151.0|13|3|sense REV__L1MC4_dup4106|chr3:11437584-11437942:-|1.769438195271959|0.0206848214554069|6.42|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 600.76416015625 2 600.763703 1199.51285 NaN NaN NaN NaN NaN NaN NaN 29.708 1 33.2 32.7 33.7 3.4923 0 0 0 0.38417 1 4795 4795 1.1933 0 1 + 5260 26913 3334 3338 6771 6771 -0.07892324092881609 EGTFLKNK 8 Unmodified _EGTFLKNK_ 0 0 0 REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|30|3|sense REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 468.76080322265625 2 468.761092 935.507631 NaN NaN NaN NaN NaN NaN NaN 59.878 1 59.878 59.378 60.378 0 0 0 0 0.40404 1 13259 13259 5.2307 0.90143 1 + 5261 27476 3335 3339 6772 6772 0.037297848974731096 EGVEKVFGVS 10 Unmodified _EGVEKVFGVS_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-SECPEP UPN47_class_I_Rep_1 2 525.3032836914062 2 525.776939 1049.53933 0.32113 0.00016884 -0.61777 -0.00032481 -0.29665 -0.00015597 525.7766666255869 57.827 0.055202 61.264 61.234 61.289 3.437 4 2 2 0 0 0 0.84575 1 13308 13308 3.2813 0 1 25235 5262 3196 3336 3340 6773 6773 0.016537328607682866 EGVFTNQTERK 11 Unmodified _EGVFTNQTERK_ 0 0 0 L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 437.558349609375 3 436.889603 1307.64698 -0.41347 -0.00018064 -0.1397 -6.1033E-05 -0.55317 -0.00024167 436.8894898993915 30.5 0.6791 34.245 33.923 34.603 3.7449 118 54 3 0 0 0 0.66279 1 4965 4965 2.084 0.34169 1 136280 5263 14779 3337 3341 6774 6774 0.005460777241751202 EGVFTNQTERK 11 Unmodified _EGVFTNQTERK_ 0 0 0 L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 436.88934326171875 3 436.889603 1307.64698 -0.99971 -0.00043676 0.27461 0.00011998 -0.7251 -0.00031679 436.88972327785507 30.932 0.77813 34.244 33.915 34.693 3.3116 105 62 3 0 0 0 0.64611 1 5203 5203 3.5927 1.1579 1 132500 5264 14779 3337 3341 6775 6775 0.005460777241751202 EGVFTNQTERK 11 Unmodified _EGVFTNQTERK_ 0 0 0 L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 436.889603 1307.64698 -0.41347 -0.00018064 -0.1397 -6.1033E-05 -0.55317 -0.00024167 436.8894898993915 30.5 0.6791 34.245 33.923 34.603 3.7449 0.031058 -0.00035817 NaN 3.5927 118 54 3 NaN NaN NaN NaN 0 NaN NaN 0 136280 5265 14779 3337 3341 0.005460777241751202 EGVFTNQTERK 11 Unmodified _EGVFTNQTERK_ 0 0 0 L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|63|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 436.889603 1307.64698 -0.99971 -0.00043676 0.27461 0.00011998 -0.7251 -0.00031679 436.88972327785507 30.932 0.77813 34.244 33.915 34.693 3.3116 0.029514 0.00018486 NaN 3.5927 105 62 3 NaN NaN NaN NaN 0 NaN NaN 0 132500 5266 14779 3337 3341 0.005460777241751202 EGVGIIKNK 9 Unmodified _EGVGIIKNK_ 0 0 0 REV__L1MB3_dup5560|chr6:7406962-7407487:-|1.3107577968021074|0.0765166245881836|4.1|151.0|3|1|sense REV__L1MB3_dup5560|chr6:7406962-7407487:-|1.3107577968021074|0.0765166245881836|4.1|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.2903137207031 2 479.290017 956.565481 0.12333 5.9111E-05 -0.027074 -1.2976E-05 0.096257 4.6135E-05 479.2899274283016 51.121 0.74498 54.646 54.317 55.062 3.5246 75 47 2 0 0 0 0.28552 1 10460 10460 14.838 0.43289 1 369630 + 5267 25898 3338 3342 6776 6776 0.0854604682289164 EGVGIIKNK 9 Unmodified _EGVGIIKNK_ 0 0 0 REV__L1MB3_dup5560|chr6:7406962-7407487:-|1.3107577968021074|0.0765166245881836|4.1|151.0|3|1|sense REV__L1MB3_dup5560|chr6:7406962-7407487:-|1.3107577968021074|0.0765166245881836|4.1|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.29010009765625 2 479.290017 956.565481 0.22286 0.00010681 -0.030385 -1.4563E-05 0.19247 9.2251E-05 479.28994937842396 50.98 0.67988 54.648 54.315 54.995 3.6679 82 40 3 0 0 0 0.15122 1 10461 10461 25.399 1.6095 1 308330 + 5268 25898 3338 3342 6777 6777 0.0854604682289164 EGVGILLTR 9 Unmodified _EGVGILLTR_ 0 0 0 ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B ENST00000466995.5_1_X:48751014-48751375:-|nuORF ENST00000466995.5_1_X:48751014-48751375:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 479.28973388671875 2 479.290017 956.565481 0.12333 5.9111E-05 -0.027074 -1.2976E-05 0.096257 4.6135E-05 479.2899274283016 51.121 0.74498 54.646 54.317 55.062 3.5246 75 47 2 0 0 0 0.073198 1 10499 10499 40.239 0 1 369630 5269 2550 3339 3343 6778 6778 0.08546046822880271 EGVGILLTR 9 Unmodified _EGVGILLTR_ 0 0 0 ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B ENST00000466995.5_1_X:48751014-48751375:-|nuORF ENST00000466995.5_1_X:48751014-48751375:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.2902526855469 2 479.290017 956.565481 0.22286 0.00010681 -0.030385 -1.4563E-05 0.19247 9.2251E-05 479.28994937842396 50.98 0.67988 54.648 54.315 54.995 3.6679 82 40 3 0 0 0 0.15547 1 10401 10401 24.991 0 1 308330 5270 2550 3339 3343 6779 6779 0.08546046822880271 EGVGILLTR 9 Unmodified _EGVGILLTR_ 0 0 0 ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B ENST00000466995.5_1_X:48751014-48751375:-|nuORF ENST00000466995.5_1_X:48751014-48751375:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 479.28985595703125 2 479.290017 956.565481 0.10208 4.8924E-05 -0.056785 -2.7216E-05 0.045291 2.1708E-05 479.289953452839 51.088 0.70618 54.698 54.397 55.103 3.6105 94 47 3 0 0 0 0.029742 3 10422 10381;10422;10490 57.249 3.8451 1 401800 5271 2550 3339 3343 6780;6781;6782 6781 0.08546046822880271 EGVLPLVGK 9 Unmodified _EGVLPLVGK_ 0 0 0 HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|295|1|anti-sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|295|1|anti-sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|295|1|anti-sense MSMS UPN46_class_I_Rep_3 1 456.2519836425781 2 456.28166 910.548768 NaN NaN NaN NaN NaN NaN NaN 52.822 1 52.822 52.322 53.322 0 0 0 0 0.38478 1 11319 11319 4.3292 0 1 5272 8019 3340 3344 6783 6783 0.08991545936942202 EGVQFQSFAY 10 Unmodified _EGVQFQSFAY_ 0 0 0 L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|37|1|anti-sense L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|37|1|anti-sense L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.2717895507812 2 588.272021 1174.52949 0.45748 0.00026912 0.036771 2.1631E-05 0.49425 0.00029075 588.2718189058426 54.803 0.39493 58.311 58.142 58.537 3.5082 37 27 2 0 0 0 0.52083 1 11618 11618 9.3831 0 1 137340 5273 13816 3341 3345 6784 6784 -0.05079455144618805 EGVVRLVEKS 10 Unmodified _EGVVRLVEKS_ 0 0 0 REV__nc|ENSG00000123411|Q9H2S9-2|IKZF4 REV__nc|ENSG00000123411|Q9H2S9-2|IKZF4 MULTI-MSMS UPN48_class_I_Rep_3 7 558.3241577148438 2 558.324588 1114.63462 0.34502 0.00019263 -0.4416 -0.00024655 -0.096578 -5.3922E-05 558.3241732473292 57.904 0.10614 61.436 61.386 61.493 3.5317 6 5 2 0 0 0 0.56155 1 12510 12510 2.7352 0.67545 1 115380 + 5274 18781 3342 3346 6785 6785 0.08189086051788763 EGVWALQVND 10 Unmodified _EGVWALQVND_ 0 0 0 nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48 nc|ENSG00000114742|Q8TAF3-5|WDR48 nc|ENSG00000114742|Q8TAF3-5|WDR48 MSMS UPN47_class_I_Rep_2 3 565.778076171875 2 565.77747 1129.54039 NaN NaN NaN NaN NaN NaN NaN 38.173 1 41.561 41.061 42.061 3.3879 0 0 0 0.53105 1 7363 7363 2.9952 0.49676 1 5275 2088 3343 3347 6786 6786 -0.019200527703333137 EGWIHGFNFR 10 Unmodified _EGWIHGFNFR_ 0 0 0 Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|34|2|sense Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|34|2|sense Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 631.8075561523438 2 631.806897 1261.59924 NaN NaN NaN NaN NaN NaN NaN 67.083 1 70.591 70.091 71.091 3.5077 0 0 0 0.53105 1 15288 15288 1.4819 0.15237 1 5276 32836 3344 3348 6787 6787 -0.021095316853461554 EGWVYPIVS 9 Unmodified _EGWVYPIVS_ 0 0 0 Charlie5_dup1114|chr7:66709799-66710120:-|1.1643233172161231|0.2125851688441372|2.45|151.0|4|1|sense Charlie5_dup1114|chr7:66709799-66710120:-|1.1643233172161231|0.2125851688441372|2.45|151.0|4|1|sense Charlie5_dup1114|chr7:66709799-66710120:-|1.1643233172161231|0.2125851688441372|2.45|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 525.3090209960938 2 525.26875 1048.52295 NaN NaN NaN NaN NaN NaN NaN 96.066 1 99.678 99.178 100.18 3.6124 0 0 0 0.39518 1 23136 23136 1.8442 0.19162 1 5277 530 3345 3349 6788 6788 0.00062651694656779 EGYSGLYEAI 10 Unmodified _EGYSGLYEAI_ 0 0 0 nc|ENSG00000107201|O95786-2|RIGI nc|ENSG00000107201|O95786-2|RIGI nc|ENSG00000107201|O95786-2|RIGI MULTI-MSMS UPN48_class_I_Rep_1 5 551.2587280273438 2 551.258579 1100.50261 0.50892 0.00028055 0.29938 0.00016504 0.8083 0.00044558 551.2586020368796 40.713 0.24562 44.219 44.153 44.399 3.506 35 25 2 0 0 0 0.54466 1 7375 7375 6.2058 0 1 87487 5278 16657 3346 3350 6789 6789 -0.04362563755807969 EGYVPWFWE 9 Unmodified _EGYVPWFWE_ 0 0 0 REV__ENST00000519323.1_1_8:74964868-75011842:+|nuORF REV__ENST00000519323.1_1_8:74964868-75011842:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 405.2999267578125 3 404.850197 1211.52876 -0.99966 -0.00040471 1.861 0.00075344 0.86137 0.00034873 404.8506740873147 19.832 0.11544 23.228 23.159 23.275 3.3963 18 12 2 0 0 0 0.12447 1 1945 1945 2.4985 0.21571 1 33114 + 5279 22773 3347 3351 6790 6790 -0.06854249793650524 EHAQVSRNTA 10 Unmodified _EHAQVSRNTA_ 0 0 0 REV__nc|ENSG00000145241|Q03188-2|CENPC REV__nc|ENSG00000145241|Q03188-2|CENPC MSMS UPN48_class_I_Rep_2 6 556.7379760742188 2 556.775793 1111.53703 NaN NaN NaN NaN NaN NaN NaN 39.975 1 43.716 43.216 44.216 3.7413 0 0 0 0.53105 1 7152 7152 1.3295 0 1 + 5280 19508 3348 3352 6791 6791 -0.014273028243223962 EHCIMFHW 8 Unmodified _EHCIMFHW_ 0 0 0 L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|41|1|anti-sense L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|41|1|anti-sense L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 551.7330322265625 2 551.733497 1101.45244 NaN NaN NaN NaN NaN NaN NaN 13.536 1 16.993 16.493 17.493 3.457 0 0 0 0.40746 1 355 355 0.69038 0.16561 1 5281 10167 3349 3353 6792 6792 -0.09422668166303083 EHCIMFHW 8 Unmodified _EHCIMFHW_ 0 0 0 L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|41|1|anti-sense L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|41|1|anti-sense L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_2 6 551.732421875 2 551.733497 1101.45244 NaN NaN NaN NaN NaN NaN NaN 14.402 1 18.056 17.556 18.556 3.6542 0 0 0 0.40746 1 433 433 0.69038 0.16561 1 5282 10167 3349 3353 6793 6793 -0.09422668166303083 EHEEIDLF 8 Unmodified _EHEEIDLF_ 0 0 0 REV__ENSG00000169499|ENST00000617275|PLEKHA2 REV__ENSG00000169499|ENST00000617275|PLEKHA2 MSMS UPN48_class_I_Rep_1 5 516.2382202148438 2 516.237647 1030.46074 NaN NaN NaN NaN NaN NaN NaN 116.94 1 120.57 120.07 121.07 3.6254 0 0 0 0.40746 1 28491 28491 0.69038 0 1 + 5283 20315 3350 3354 6794 6794 -0.053271194443368586 EHESSRRI 8 Unmodified _EHESSRRI_ 0 0 0 nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1 nc|ENSG00000132436|Q6PIW4-2|FIGNL1 nc|ENSG00000132436|Q6PIW4-2|FIGNL1 MULTI-SECPEP UPN47_class_I_Rep_2 3 507.795166015625 2 507.259779 1012.50501 0.19326 9.8033E-05 -0.94571 -0.00047972 -0.75245 -0.00038169 507.76101105798 77.541 0.12693 80.872 80.825 80.952 3.3315 14 12 2 0 0 0 0.72333 1 19255 19255 3.9444 0.3479 1 50914 5284 2754 3351 3355 6795 6795 -0.0007467050747891335 EHETITAPPLE 11 Unmodified _EHETITAPPLE_ 0 0 0 REV__Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|43|3|sense REV__Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|43|3|sense MSMS UPN48_class_I_Rep_3 7 618.8067626953125 2 618.808968 1235.60338 NaN NaN NaN NaN NaN NaN NaN 71.867 1 75.393 74.893 75.893 3.5266 0 0 0 0.38417 1 16719 16719 1.1933 0.50296 1 + 5285 17411 3352 3356 6796 6796 -0.00499531772948103 EHFIEWEK 8 Unmodified _EHFIEWEK_ 0 0 0 REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|32|2|sense REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|32|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.26904296875 2 559.269281 1116.52401 0.57897 0.0003238 -1.238 -0.00069236 -0.659 -0.00036856 559.2685280890405 19.444 0.1115 22.982 22.892 23.004 3.5378 19 13 2 0 0 0 0.82752 1 1467 1467 0.69038 0 1 21327 + 5286 25164 3353 3357 6797 6797 -0.02959133936451508 EHFLEKLA 8 Unmodified _EHFLEKLA_ 0 0 0 REV__ENSG00000085511|ENST00000392142|MAP3K4 REV__ENSG00000085511|ENST00000392142|MAP3K4 MULTI-MSMS UPN47_class_I_Rep_3 4 493.76922607421875 2 493.768917 985.523281 0.22529 0.00011124 -0.022729 -1.1223E-05 0.20256 0.00010002 493.7688160655461 54.233 0.73397 57.418 57.175 57.909 3.1856 72 45 2 0 0 0 0.82752 1 12281 12281 7.2892 0.56607 1 90769 + 5287 17955 3354 3358 6798 6798 0.0299407141451411 EHFNRHRKR 9 Unmodified _EHFNRHRKR_ 0 0 0 L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|20|1|sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|20|1|sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|20|1|sense MSMS UPN47_class_I_Rep_3 4 640.3458862304688 2 640.347586 1278.68062 NaN NaN NaN NaN NaN NaN NaN 92.077 1 95.481 94.981 95.981 3.4034 0 0 0 0.39518 1 22999 22999 1.8442 0 1 5288 12836 3355 3359 6799 6799 0.052425887972503915 EHHFTFPPA 9 Unmodified _EHHFTFPPA_ 0 0 0 REV__MSTB1_dup3782|chr15:42257138-42257553:+|1.0010041562544485|0.0186535783940814|5.75|151.0|3|1|sense REV__MSTB1_dup3782|chr15:42257138-42257553:+|1.0010041562544485|0.0186535783940814|5.75|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 541.7584228515625 2 541.756341 1081.49813 NaN NaN NaN NaN NaN NaN NaN 26.436 1 29.931 29.431 30.431 3.4945 0 0 0 0.39428 1 3824 3824 2.0598 0.21551 1 + 5289 31905 3356 3360 6800 6800 -0.0393598338805532 EHILVNKAP 9 Unmodified _EHILVNKAP_ 0 0 0 ENST00000498256.1_1_8:29489773-29490157:+|nuORF ENST00000498256.1_1_8:29489773-29490157:+|nuORF ENST00000498256.1_1_8:29489773-29490157:+|nuORF MSMS UPN46_class_I_Rep_3 1 510.7952575683594 2 510.795466 1019.57638 NaN NaN NaN NaN NaN NaN NaN 67.052 1 67.052 66.552 67.552 0 0 0 0 0.39518 1 15245 15245 1.8442 0.36234 1 5290 7118 3357 3361 6801 6801 0.06737449197180467 EHILYFPVF 9 Unmodified _EHILYFPVF_ 0 0 0 L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense MSMS UPN47_class_I_Rep_1 2 582.8046264648438 2 582.808042 1163.60153 NaN NaN NaN NaN NaN NaN NaN 68.944 1 72.312 71.812 72.812 3.3678 0 0 0 0.38478 1 16676 16676 4.3292 0.73274 1 5291 12521 3358 3362 6802 6802 0.02627503999747205 EHILYFPVF 9 Unmodified _EHILYFPVF_ 0 0 0 L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense MSMS UPN47_class_I_Rep_2 3 582.8058471679688 2 582.808042 1163.60153 NaN NaN NaN NaN NaN NaN NaN 69.405 1 72.681 72.181 73.181 3.2761 0 0 0 0.38478 1 16853 16853 4.3292 0.73274 1 5292 12521 3358 3362 6803 6803 0.02627503999747205 EHILYFPVF 9 Unmodified _EHILYFPVF_ 0 0 0 L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|126|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 582.2943725585938 2 582.808042 1163.60153 0.44527 0.00025951 -2.8787 -0.0016777 -2.4334 -0.0014182 582.8063157179162 69.12 0.085091 72.324 72.295 72.38 3.2044 6 5 2 0 0 0 0.12462 1 16848 16848 1.8442 0.19162 1 46962 5293 12521 3358 3362 6804 6804 0.02627503999747205 EHIWYQQK 8 Unmodified _EHIWYQQK_ 0 0 0 L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|7|1|sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|7|1|sense L1MEd_dup19073|chr17:9371650-9372356:-|1.5257046357881483|0.0088448987001809|7.43|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 566.282958984375 2 566.282723 1130.55089 NaN NaN NaN NaN NaN NaN NaN 29.601 1 33.359 32.859 33.859 3.7578 0 0 0 0.40746 1 4725 4725 0.69038 0 1 5294 13190 3359 3363 6805 6805 -0.009160253252503026 EHKGGTPFK 9 Unmodified _EHKGGTPFK_ 0 0 0 REV__nc|ENSG00000164674|Q4VX76-2|SYTL3 REV__nc|ENSG00000164674|Q4VX76-2|SYTL3 MSMS UPN47_class_I_Rep_2 3 500.76495361328125 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 44.927 1 48.283 47.783 48.783 3.3556 0 0 0 0.39518 1 9418 9418 1.8442 0 1 + 5295 20074 3360 3364 6806 6806 0.01400303128991709 EHLGHFISLQ 10 Unmodified _EHLGHFISLQ_ 0 0 0 MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 590.8079833984375 2 590.809105 1179.60366 0.51653 0.00030517 -0.20171 -0.00011917 0.31483 0.000186 590.808877415625 53.367 0.75228 56.693 56.38 57.132 3.3266 73 48 2 0 0 0 0.47413 1 11973 11973 13.906 0 1 144540 5296 15909 3361 3365 6807 6807 0.021039327375547145 EHLGHFISLQ 10 Unmodified _EHLGHFISLQ_ 0 0 0 MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 590.809105 1179.60366 0.43811 0.00025884 0.10705 6.3247E-05 0.54516 0.00032208 590.8091813649937 53.394 0.88152 56.913 56.562 57.443 3.5192 0.10514 4.946E-05 NaN 13.906 133 62 3 NaN NaN NaN NaN 0 NaN NaN 0 391710 5297 15909 3361 3365 0.021039327375547145 EHLGHFISLQ 10 Unmodified _EHLGHFISLQ_ 0 0 0 MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MER3_dup9359|chr17:45575224-45575366:+|1.2714712740621756|0.0414214757312422|4.94|151.0|12|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 590.809105 1179.60366 0.54706 0.00032321 0.14429 8.5246E-05 0.69135 0.00040846 590.809098780147 53.244 0.74525 56.854 56.498 57.243 3.6098 0.046228 9.3459E-05 NaN 13.906 106 47 3 NaN NaN NaN NaN 0 NaN NaN 0 341930 5298 15909 3361 3365 0.021039327375547145 EHLYFCLHC 9 Unmodified _EHLYFCLHC_ 0 0 0 L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|326|3|anti-sense L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|326|3|anti-sense L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|326|3|anti-sense MSMS UPN46_class_I_Rep_3 1 582.7496948242188 2 582.751887 1163.48922 NaN NaN NaN NaN NaN NaN NaN 19.035 1 19.035 18.535 19.535 0 0 0 0 0.39518 1 1754 1754 1.8442 0.19162 1 5299 14193 3362 3366 6808 6808 -0.08598416340396398 EHNQVQLQT 9 Unmodified _EHNQVQLQT_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS UPN47_class_I_Rep_1 2 548.7732543945312 2 548.772719 1095.53089 -0.02213 -1.2144E-05 1.0566 0.00057984 1.0345 0.0005677 548.7732603726423 31.098 0.38438 34.828 34.587 34.971 3.7293 45 30 2 0 0 0 0.46869 1 5184 5184 3.9444 0.3479 1 99143 5300 1768 3363 3367 6809 6809 -0.013058210558483552 EHPCRGLWP 9 Unmodified _EHPCRGLWP_ 0 0 0 HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|2|1|sense HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|2|1|sense HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 547.7621459960938 2 547.763643 1093.51273 0.026405 1.4464E-05 -1.8925 -0.0010367 -1.8661 -0.0010222 547.7632392289644 12.894 0.16834 16.282 16.22 16.388 3.388 29 17 3 0 0 0 0.48643 1 175 175 2.0598 0.21551 1 43267 5301 8114 3364 3368 6810 6810 -0.03028234511566552 EHPRFRVF 8 Unmodified _EHPRFRVF_ 0 0 0 ENSG00000119862|ENST00000238875|LGALSL ENSG00000119862|ENST00000238875|LGALSL ENSG00000119862|ENST00000238875|LGALSL MULTI-MSMS UPN48_class_I_Rep_2 6 544.2935180664062 2 544.293425 1086.5723 0.52362 0.000285 -1.0884 -0.0005924 -0.56477 -0.0003074 544.2928903589408 63.885 0.11646 67.36 67.324 67.441 3.4743 9 6 2 0 0 0 0.82752 1 14406 14406 4.3292 0 1 135810 5302 2300 3365 3369 6811 6811 0.032474044941182 EHPRFRVF 8 Unmodified _EHPRFRVF_ 0 0 0 ENSG00000119862|ENST00000238875|LGALSL ENSG00000119862|ENST00000238875|LGALSL ENSG00000119862|ENST00000238875|LGALSL MSMS UPN48_class_I_Rep_3 7 544.2931518554688 2 544.293425 1086.5723 NaN NaN NaN NaN NaN NaN NaN 63.652 1 67.161 66.661 67.661 3.5091 0 0 0 0.388 1 14248 14248 12.532 0 1 5303 2300 3365 3369 6812 6812 0.032474044941182 EHPRFRVF 8 Unmodified _EHPRFRVF_ 0 0 0 ENSG00000119862|ENST00000238875|LGALSL ENSG00000119862|ENST00000238875|LGALSL ENSG00000119862|ENST00000238875|LGALSL MULTI-MATCH UPN48_class_I_Rep_3 7 2 544.293425 1086.5723 0.5176 0.00028173 0.72605 0.00039519 1.2437 0.00067691 544.2944149559232 64.044 0.033585 67.553 67.529 67.563 3.5083 0.096457 0.0016382 NaN 4.3292 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 21931 5304 2300 3365 3369 0.032474044941182 EHRWQPYRN 9 Unmodified _EHRWQPYRN_ 0 0 0 L1MB8_dup13567|chr15:100948615-100950821:+|2.274186437487737|0.0739535028997522|4.94|151.0|37|2|sense L1MB8_dup13567|chr15:100948615-100950821:+|2.274186437487737|0.0739535028997522|4.94|151.0|37|2|sense L1MB8_dup13567|chr15:100948615-100950821:+|2.274186437487737|0.0739535028997522|4.94|151.0|37|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 643.3140258789062 2 643.312877 1284.6112 0.56744 0.00036504 1.4073 0.00090535 1.9748 0.0012704 643.8153095891741 33.489 0.57013 33.489 33.109 33.68 0 70 45 2 0 0 0 0.48846 1 5796 5796 1.8442 0.36234 1 103930 5305 10939 3366 3370 6813 6813 -0.019719149421689508 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN46_class_I_Rep_3 1 405.7982482910156 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.8 1 116.8 116.3 117.3 0 0 0 0 0.53105 1 28929 28929 0.15932 0 1 + 5306 29769 3367 3371 6814 6814 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN46_class_I_Rep_3 1 405.7974548339844 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 118.98 1 118.98 118.48 119.48 0 0 0 0 0.53105 1 29556 29556 0.15932 0 1 + 5307 29769 3367 3371 6815 6815 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_1 2 405.79736328125 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 115.85 1 119.45 118.95 119.95 3.5943 0 0 0 0.53105 1 28677 28677 0.15932 0 1 + 5308 29769 3367 3371 6816 6816 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_1 2 405.7981872558594 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.29 1 119.88 119.38 120.38 3.5964 0 0 0 0.53105 1 28793 28793 0.15932 0 1 + 5309 29769 3367 3371 6817 6817 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_1 2 405.7974548339844 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.6 1 120.2 119.7 120.7 3.6036 0 0 0 0.53105 1 28882 28882 0.15932 0 1 + 5310 29769 3367 3371 6818 6818 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_1 2 405.7973327636719 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.82 1 120.42 119.92 120.92 3.6036 0 0 0 0.53105 1 28942 28942 0.15932 0 1 + 5311 29769 3367 3371 6819 6819 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_2 3 405.797607421875 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 115.81 1 119.31 118.81 119.81 3.4965 0 0 0 0.53105 1 28251 28251 0.15932 0 1 + 5312 29769 3367 3371 6820 6820 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_2 3 405.79766845703125 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.19 1 119.69 119.19 120.19 3.4965 0 0 0 0.53105 1 28358 28358 0.15932 0 1 + 5313 29769 3367 3371 6821 6821 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_3 4 405.7976379394531 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.61 1 120.07 119.57 120.57 3.462 0 0 0 0.53105 1 28701 28701 0.15932 0 1 + 5314 29769 3367 3371 6822 6822 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN47_class_I_Rep_3 4 405.7977600097656 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 118.27 1 121.7 121.2 122.2 3.4238 0 0 0 0.53105 1 29165 29165 0.15932 0 1 + 5315 29769 3367 3371 6823 6823 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.79779052734375 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 114.19 1 117.82 117.32 118.32 3.6301 0 0 0 0.53105 1 27759 27759 0.15932 0 1 + 5316 29769 3367 3371 6824 6824 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.79779052734375 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 114.44 1 118.07 117.57 118.57 3.6301 0 0 0 0.53105 1 27823 27823 0.15932 0 1 + 5317 29769 3367 3371 6825 6825 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.798095703125 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.49 1 120.11 119.61 120.61 3.6254 0 0 0 0.53105 1 28368 28368 0.15932 0 1 + 5318 29769 3367 3371 6826 6826 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.79736328125 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.88 1 120.51 120.01 121.01 3.6254 0 0 0 0.53105 1 28475 28475 0.15932 0 1 + 5319 29769 3367 3371 6827 6827 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.7979736328125 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 118.2 1 121.82 121.32 122.32 3.6215 0 0 0 0.53105 1 28823 28823 0.15932 0 1 + 5320 29769 3367 3371 6828 6828 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.7976379394531 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 119.75 1 123.37 122.87 123.87 3.6189 0 0 0 0.53105 1 29233 29233 0.15932 0 1 + 5321 29769 3367 3371 6829 6829 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_2 6 405.7982177734375 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 116.2 1 119.86 119.36 120.36 3.6607 0 0 0 0.53105 1 27833 27833 0.15932 0 1 + 5322 29769 3367 3371 6830 6830 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_3 7 405.79791259765625 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 114.4 1 118.06 117.56 118.56 3.6511 0 0 0 0.53105 1 27199 27199 0.15932 0 1 + 5323 29769 3367 3371 6831 6831 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_3 7 405.7972717285156 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 114.75 1 118.4 117.9 118.9 3.6511 0 0 0 0.53105 1 27295 27295 0.15932 0 1 + 5324 29769 3367 3371 6832 6832 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_3 7 405.7979431152344 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 118.31 1 121.89 121.39 122.39 3.5847 0 0 0 0.53105 1 28135 28135 0.15932 0 1 + 5325 29769 3367 3371 6833 6833 -0.2220375640038128 EHSFCFCHCC 10 Unmodified _EHSFCFCHCC_ 0 0 0 REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense REV__L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_3 7 405.7978820800781 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 119.72 1 123.29 122.79 123.79 3.566 0 0 0 0.53105 1 28453 28453 0.15932 0 1 + 5326 29769 3367 3371 6834 6834 -0.2220375640038128 EHSSYHHRR 9 Unmodified _EHSSYHHRR_ 0 0 0 REV__L1MC1_dup4880|chr5:171880997-171882318:-|1.013658892309962|0.0455396902660757|4.48|150.0|36|3|sense REV__L1MC1_dup4880|chr5:171880997-171882318:-|1.013658892309962|0.0455396902660757|4.48|150.0|36|3|sense MSMS UPN47_class_I_Rep_3 4 604.7886352539062 2 604.787027 1207.5595 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.54 114.04 115.04 3.529 0 0 0 0.39428 1 27236 27236 2.0598 0.40713 1 + 5327 26571 3368 3372 6835 6835 -0.035976586360675356 EHTYDYVW 8 Unmodified _EHTYDYVW_ 0 0 0 REV__ENST00000464225.5_1_22:51018165-51018656:-|nuORF REV__ENST00000464225.5_1_22:51018165-51018656:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 556.7379760742188 2 556.737814 1111.46108 -0.0097911 -5.4511E-06 -0.083033 -4.6227E-05 -0.092824 -5.1678E-05 556.7378021770184 39.702 0.74517 43.369 43.134 43.879 3.6668 85 55 2 0 0 0 0.82752 1 7827 7827 9.3474 1.4373 1 96502 + 5328 18103 3369 3373 6836 6836 -0.090196997244675 EHWELFVLQ 9 Unmodified _EHWELFVLQ_ 0 0 0 REV__TAS1R2|p.M603Hfs*107|1|0.11|ENSG00000179002|chr1:18840316-18840317|-/C|frameshift_variant REV__TAS1R2|p.M603Hfs*107|1|0.11|ENSG00000179002|chr1:18840316-18840317|-/C|frameshift_variant MSMS UPN47_class_I_Rep_2 3 600.8072509765625 2 600.806031 1199.59751 NaN NaN NaN NaN NaN NaN NaN 44.349 1 47.704 47.204 48.204 3.3556 0 0 0 0.39518 1 9239 9239 1.8442 0.36234 1 + 5329 20667 3370 3374 6837 6837 0.005694145060488154 EHWRGRRVF 9 Unmodified _EHWRGRRVF_ 0 0 0 L1MEf_dup11249|chr20:1154946-1156880:+|3.337640821498171|0.478372746758352|2.8|151.0|31|2|sense L1MEf_dup11249|chr20:1154946-1156880:+|3.337640821498171|0.478372746758352|2.8|151.0|31|2|sense L1MEf_dup11249|chr20:1154946-1156880:+|3.337640821498171|0.478372746758352|2.8|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 414.8912048339844 3 414.891612 1241.65301 NaN NaN NaN NaN NaN NaN NaN 95.481 1 95.481 94.981 95.981 0 0 0 0 0.38639 1 23183 23183 2.2828 0.69049 1 5330 13239 3371 3375 6838 6838 0.041846855370067715 EHYHIFRL 8 Unmodified _EHYHIFRL_ 0 0 0 REV__THE1B_dup19740|chr16:23920838-23921195:-|1.158019765787951|0.0054735659886422|7.72|151.0|24|2|anti-sense REV__THE1B_dup19740|chr16:23920838-23921195:-|1.158019765787951|0.0054735659886422|7.72|151.0|24|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.6852416992188 2 557.793258 1113.57196 NaN NaN NaN NaN NaN NaN NaN 114.52 1 114.52 114.02 115.02 0 0 0 0 0.40604 1 28308 28308 2.5775 0 1 + 5331 32231 3372 3376 6839 6839 0.019719847742635466 EIAPAKDV 8 Unmodified _EIAPAKDV_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;MAP4|p.T960Nfs*11|1|0.21|ENSG00000047849|chr3:47869308-47869309|-/T|frameshift_variant nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MSMS UPN48_class_I_Rep_2 6 421.7344055175781 2 421.734543 841.454533 NaN NaN NaN NaN NaN NaN NaN 34.02 1 37.681 37.181 38.181 3.6607 0 0 0 0.39996 1 5436 5436 7.9102 0.62092 1 5332 16622 3373 3377 6840 6840 0.027464071148074254 EICDSDFDW 9 Unmodified _EICDSDFDW_ 0 0 0 REV__L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|182|2|anti-sense REV__L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|182|2|anti-sense MSMS UPN46_class_I_Rep_3 1 565.2113647460938 2 565.210772 1128.40699 NaN NaN NaN NaN NaN NaN NaN 58.204 1 58.204 57.704 58.704 0 0 0 0 0.39518 1 12798 12798 1.8442 1.1539 1 + 5333 25786 3374 3378 6841 6841 -0.15207659938346296 EICITIFRY 9 Unmodified _EICITIFRY_ 0 0 0 REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|10|1|sense REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 579.2953491210938 2 579.30481 1156.59507 NaN NaN NaN NaN NaN NaN NaN 55.236 1 58.715 58.215 59.215 3.4785 0 0 0 0.2088 1 12522 12522 15.847 0 1 + 5334 25043 3375 3379 6842 6842 0.02303242776724801 EICITIFRY 9 Unmodified _EICITIFRY_ 0 0 0 REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|10|1|sense REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 579.2949829101562 2 579.30481 1156.59507 NaN NaN NaN NaN NaN NaN NaN 55.385 1 58.863 58.363 59.363 3.4785 0 0 0 0.15455 1 12567 12567 19.257 0 1 + 5335 25043 3375 3379 6843 6843 0.02303242776724801 EICITIFRY 9 Unmodified _EICITIFRY_ 0 0 0 REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|10|1|sense REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 579.29443359375 2 579.30481 1156.59507 NaN NaN NaN NaN NaN NaN NaN 55.461 1 58.771 58.271 59.271 3.3102 0 0 0 0.15455 1 12620 12620 19.257 1.122 1 + 5336 25043 3375 3379 6844 6844 0.02303242776724801 EICYRDFYW 9 Unmodified _EICYRDFYW_ 0 0 0 REV__L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|116|1|anti-sense REV__L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|116|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 647.7844848632812 2 647.781699 1293.54884 0.235 0.00015223 1.7813 0.0011539 2.0163 0.0013061 647.7828288333624 46.953 0.49628 50.648 50.42 50.916 3.6951 44 28 2 0 0 0 0.48643 1 10012 10012 2.0598 0.40713 1 110840 + 5337 25039 3376 3380 6845 6845 -0.08618822125367842 EIDWERYN 8 Unmodified _EIDWERYN_ 0 0 0 ENST00000483060.1_1_1:67091531-67109432:+|nuORF;SGIP1|p.P428Lfs*70|1|0.04|ENSG00000118473|chr1:66682336-66682336|C/-|frameshift_variant;nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1 ENST00000483060.1_1_1:67091531-67109432:+|nuORF ENST00000483060.1_1_1:67091531-67109432:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 562.7540283203125 2 562.753995 1123.49344 0.2832 0.00015937 -0.20846 -0.00011731 0.074742 4.2061E-05 562.7537992091975 46.192 0.92208 49.436 49.044 49.966 3.2441 113 57 3 0 0 0 0.82752 1 10011 10011 2.0598 0 1 244680 5338 2249 3377 3381 6846 6846 -0.06336912321489763 EIELSLKY 8 Unmodified _EIELSLKY_ 0 0 0 REV__ENSG00000123838|ENST00000367070|C4BPA REV__ENSG00000123838|ENST00000367070|C4BPA MSMS UPN46_class_I_Rep_3 1 497.77581787109375 2 497.776408 993.538263 NaN NaN NaN NaN NaN NaN NaN 62.136 1 62.136 61.636 62.636 0 0 0 0 0.36226 1 13875 13875 19.257 0 1 + + 5339 17488 3378 3382 6847 6847 0.04123518491860523 EIFGFNDK 8 Unmodified _EIFGFNDK_ 0 0 0 REV__ENST00000483030.1_1_1:115263111-115268953:-|nuORF REV__ENST00000483030.1_1_1:115263111-115268953:-|nuORF MSMS UPN47_class_I_Rep_1 2 485.23828125 2 485.23745 968.460347 NaN NaN NaN NaN NaN NaN NaN 38.564 1 42.229 41.729 42.729 3.6652 0 0 0 0.40643 1 7446 7446 2.0598 0 1 + 5340 17561 3379 3383 6848 6848 -0.025144943735199377 EIFGFNDK 8 Unmodified _EIFGFNDK_ 0 0 0 REV__ENST00000483030.1_1_1:115263111-115268953:-|nuORF REV__ENST00000483030.1_1_1:115263111-115268953:-|nuORF MSMS UPN47_class_I_Rep_1 2 485.238525390625 2 485.23745 968.460347 NaN NaN NaN NaN NaN NaN NaN 38.765 1 42.431 41.931 42.931 3.6652 0 0 0 0.40643 1 7507 7507 2.0598 0 1 + 5341 17561 3379 3383 6849 6849 -0.025144943735199377 EIFGTIGMR 9 Unmodified _EIFGTIGMR_ 0 0 0 nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-5|PRMT1 nc|ENSG00000126457|Q99873-5|PRMT1 MSMS UPN48_class_I_Rep_1 5 512.268310546875 2 512.268227 1022.5219 NaN NaN NaN NaN NaN NaN NaN 54.122 1 57.636 57.136 58.136 3.5143 0 0 0 0.37891 1 11428 11428 5.7319 2.1354 1 5342 2535 3380 3384 6850 6850 0.0115411405413397 EIFKFKRMI 9 Unmodified _EIFKFKRMI_ 0 0 0 REV__L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|31|2|sense REV__L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|31|2|sense MSMS UPN48_class_I_Rep_3 7 404.571533203125 3 404.570488 1210.68964 NaN NaN NaN NaN NaN NaN NaN 40.657 1 44.308 43.808 44.808 3.6509 0 0 0 0.39887 1 7257 7257 0.96228 0.33545 1 + 5343 27694 3381 3385 6851 6851 0.09271801318732287 EIFNTTEI 8 Unmodified _EIFNTTEI_ 0 0 0 nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 MULTI-MSMS UPN47_class_I_Rep_1 2 483.74224853515625 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.82752 1 10010 10010 10.074 1.4806 1 1297200 5344 3055 3382 3386 6852 6852 -0.013539314389618085 EIFNTTEI 8 Unmodified _EIFNTTEI_ 0 0 0 nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 MULTI-MSMS UPN47_class_I_Rep_2 3 483.7428894042969 2 483.742565 965.470577 0.064223 3.1067E-05 -0.086121 -4.166E-05 -0.021898 -1.0593E-05 483.742428791502 46.889 1.0416 50.24 49.827 50.869 3.3515 222 71 4 0 0 0 0.82752 1 10193 10193 3.9444 0 1 1214200 5345 3055 3382 3386 6853 6853 -0.013539314389618085 EIFPAPFVPY 10 Unmodified _EIFPAPFVPY_ 0 0 0 REV__L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|78|1|anti-sense REV__L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 590.306884765625 2 590.307875 1178.6012 NaN NaN NaN NaN NaN NaN NaN 68.707 1 72.162 71.662 72.662 3.4548 0 0 0 0.53105 1 15884 15884 1.8442 0 1 + 5346 24015 3383 3387 6854 6854 0.019040842799086022 EIFPVAFDPH 10 Unmodified _EIFPVAFDPH_ 0 0 0 REV__Tigger1_dup6143|chr8:25207217-25208784:+|3.220455114269463|0.0180770118319223|7.48|151.0|81|2|anti-sense REV__Tigger1_dup6143|chr8:25207217-25208784:+|3.220455114269463|0.0180770118319223|7.48|151.0|81|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.2897338867188 2 586.292756 1170.57096 -0.020779 -1.2182E-05 -1.9584 -0.0011482 -1.9792 -0.0011604 586.2905434730976 40.288 0.46091 43.525 43.358 43.819 3.2372 39 26 2 0 0 0 0.54466 1 8114 8114 6.2058 0.44535 1 60801 + 5347 32490 3384 3388 6855 6855 -0.007502743852910498 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MSMS UPN48_class_I_Rep_2 6 404.57171630859375 3 404.571768 1210.69348 NaN NaN NaN NaN NaN NaN NaN 40.782 1 44.523 44.023 45.023 3.7413 0 0 0 0.38394 1 7380 7380 4.5289 2.7866 1 5348 5201 3385 3389 6856 6856 0.09655607136801336 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MSMS UPN48_class_I_Rep_2 6 404.5713806152344 3 404.571768 1210.69348 NaN NaN NaN NaN NaN NaN NaN 40.952 1 44.703 44.203 45.203 3.7508 0 0 0 0.37515 1 7429 7429 6.6304 3.5581 1 5349 5201 3385 3389 6857 6857 0.09655607136801336 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MSMS UPN48_class_I_Rep_2 6 404.57147216796875 3 404.571768 1210.69348 NaN NaN NaN NaN NaN NaN NaN 41.079 1 44.83 44.33 45.33 3.7508 0 0 0 0.37515 1 7467 7467 6.6304 3.5581 1 5350 5201 3385 3389 6858 6858 0.09655607136801336 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MULTI-MSMS UPN48_class_I_Rep_3 7 404.5717468261719 3 404.571768 1210.69348 0.009875 3.9951E-06 -0.30351 -0.00012279 -0.29364 -0.0001188 404.5715002560469 40.839 0.18504 44.49 44.372 44.557 3.6509 25 18 2 0 0 0 0.48433 1 7313 7313 2.2828 0.69049 1 52459 5351 5201 3385 3389 6859 6859 0.09655607136801336 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MULTI-MSMS UPN48_class_I_Rep_3 7 404.57177734375 3 404.571768 1210.69348 0.010085 4.0802E-06 -0.07197 -2.9117E-05 -0.061885 -2.5037E-05 404.57161624483103 40.954 0.16138 44.605 44.55 44.711 3.6509 24 15 2 0 0 0 0.46085 1 7353 7353 4.5289 3.4574 1 81007 5352 5201 3385 3389 6860 6860 0.09655607136801336 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MULTI-MSMS UPN48_class_I_Rep_3 7 404.9060363769531 3 404.571768 1210.69348 0.010422 4.2163E-06 0.047079 1.9047E-05 0.057501 2.3263E-05 404.57171557626356 41.219 0.30378 44.864 44.69 44.994 3.6458 50 30 2 0 0 0 0.24411 1 7398 7398 17.443 10.341 1 113760 5353 5201 3385 3389 6861 6861 0.09655607136801336 EIFRHILQR 9 Unmodified _EIFRHILQR_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MULTI-MATCH UPN48_class_I_Rep_1 5 3 404.571768 1210.69348 -0.12559 -5.0812E-05 -0.40308 -0.00016307 -0.52867 -0.00021389 404.5718984660149 41.728 0.13051 45.234 45.201 45.331 3.506 0.18481 -0.00050864 NaN 17.443 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 61705 5354 5201 3385 3389 0.09655607136801336 EIFYTAIVNR 10 Unmodified _EIFYTAIVNR_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS nc|ENSG00000119969|Q9NRZ9-6|HELLS nc|ENSG00000119969|Q9NRZ9-6|HELLS MSMS UPN48_class_I_Rep_1 5 613.3327026367188 2 613.332413 1224.65027 NaN NaN NaN NaN NaN NaN NaN 57.787 1 61.281 60.781 61.781 3.4942 0 0 0 0.53105 1 12550 12550 13.615 9.6705 1 5355 2308 3386 3390 6862 6862 0.04693372568817722 EIFYTAIVNR 10 Unmodified _EIFYTAIVNR_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS nc|ENSG00000119969|Q9NRZ9-6|HELLS nc|ENSG00000119969|Q9NRZ9-6|HELLS MSMS UPN48_class_I_Rep_2 6 613.33154296875 2 613.332413 1224.65027 NaN NaN NaN NaN NaN NaN NaN 57.642 1 61.156 60.656 61.656 3.5142 0 0 0 0.53105 1 12484 12484 10.151 6.2062 1 5356 2308 3386 3390 6863 6863 0.04693372568817722 EIGLLATVGV 10 Unmodified _EIGLLATVGV_ 0 0 0 ENST00000555527.1_1_14:67579771-67631908:+|nuORF;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN ENST00000555527.1_1_14:67579771-67631908:+|nuORF ENST00000555527.1_1_14:67579771-67631908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.2923278808594 2 486.292225 970.569897 0.14868 7.2302E-05 0.11102 5.3988E-05 0.2597 0.00012629 486.2922123818221 54.873 0.92555 58.059 57.643 58.569 3.1856 121 54 3 0 0 0 0.47413 1 12409 12409 13.906 3.8321 1 282780 5357 4542 3387 3391 6864 6864 0.08343511245823265 EIGLWLIWCT 10 Unmodified _EIGLWLIWCT_ 0 0 0 REV__HAL1_dup1677|chr1:228094693-228094829:-|1.2161397277070995|0.4483065503591266|1.44|151.0|8|2|anti-sense REV__HAL1_dup1677|chr1:228094693-228094829:-|1.2161397277070995|0.4483065503591266|1.44|151.0|8|2|anti-sense MSMS UPN48_class_I_Rep_3 7 616.8555297851562 2 617.32046 1232.62637 NaN NaN NaN NaN NaN NaN NaN 48.904 1 52.533 52.033 53.033 3.6291 0 0 0 0.53105 1 9760 9760 1.4819 0 1 + 5358 23369 3388 3392 6865 6865 0.019358158108389034 EIHSLSMRNI 10 Unmodified _EIHSLSMRNI_ 0 0 0 LTR32_dup1155|chr20:8517337-8517828:-|1.3486246256980303|0.0078348881248496|7.43|150.0|6|2|sense LTR32_dup1155|chr20:8517337-8517828:-|1.3486246256980303|0.0078348881248496|7.43|150.0|6|2|sense LTR32_dup1155|chr20:8517337-8517828:-|1.3486246256980303|0.0078348881248496|7.43|150.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 600.3131103515625 2 600.313697 1198.61284 NaN NaN NaN NaN NaN NaN NaN 36.986 1 40.492 39.992 40.992 3.507 0 0 0 0.53105 1 6237 6237 1.4819 0 1 5359 15617 3389 3393 6866 6866 0.0214795803162815 EIIAFYKSL 9 Unmodified _EIIAFYKSL_ 0 0 0 REV__Charlie7_dup2008|chr8:97677521-97678602:+|2.299023317419177|0.085834106518252|4.74|151.0|46|1|anti-sense REV__Charlie7_dup2008|chr8:97677521-97678602:+|2.299023317419177|0.085834106518252|4.74|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 542.3095703125 2 542.307875 1082.6012 NaN NaN NaN NaN NaN NaN NaN 71.539 1 74.914 74.414 75.414 3.3751 0 0 0 0.38639 1 17449 17449 3.9444 0 1 + 5360 17390 3390 3394 6867 6867 0.06320084279923321 EIIDLVLDR 9 Unmodified _EIIDLVLDR_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_1 5 543.3134155273438 2 543.313689 1084.61282 0.45681 0.00024819 0.12885 7.0007E-05 0.58566 0.0003182 543.3138253922565 68.594 0.201 72.046 71.929 72.13 3.4517 28 18 2 0 0 0 0.40701 1 15833 15833 7.609 2.3121 1 60861 5361 2425;4314;7292 3391 3395 6868 6868 0.07390281303219126 EIIDLVLDR 9 Unmodified _EIIDLVLDR_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN48_class_I_Rep_2 6 543.3137817382812 2 543.313689 1084.61282 NaN NaN NaN NaN NaN NaN NaN 68.481 1 71.989 71.489 72.489 3.5083 0 0 0 0.37698 1 15797 15797 6.1918 0.96118 1 5362 2425;4314;7292 3391 3395 6869 6869 0.07390281303219126 EIIDLVLDR 9 Unmodified _EIIDLVLDR_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_3 7 543.3136596679688 2 543.313689 1084.61282 0.56666 0.00030787 -0.55233 -0.00030009 0.014327 7.7842E-06 543.313512340496 68.374 0.17757 71.883 71.749 71.927 3.5094 21 16 2 0 0 0 0.37318 1 15660 15660 9.544 2.4423 1 71288 5363 2425;4314;7292 3391 3395 6870 6870 0.07390281303219126 EIIDLVLDR 9 Unmodified _EIIDLVLDR_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN48_class_I_Rep_3 7 543.3121337890625 2 543.313689 1084.61282 NaN NaN NaN NaN NaN NaN NaN 68.511 1 72.021 71.521 72.521 3.5094 0 0 0 0.3824 1 15713 15713 4.897 1.3005 1 5364 2425;4314;7292 3391 3395 6871 6871 0.07390281303219126 EIKDREEI 8 Unmodified _EIKDREEI_ 0 0 0 L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.272216796875 2 516.272021 1030.52949 -0.10021 -5.1735E-05 0.47497 0.00024521 0.37476 0.00019348 516.2723022560878 41.971 0.57702 45.651 45.476 46.053 3.6792 60 38 2 0 0 0 0.82752 1 8518 8518 6.2058 0.9089 1 73239 5365 13369 3392 3396 6872 6872 0.01544544855391905 EIKDREEI 8 Unmodified _EIKDREEI_ 0 0 0 L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.272705078125 2 516.272021 1030.52949 -0.06982 -3.6046E-05 0.49929 0.00025777 0.42947 0.00022172 516.2722105105861 42.482 0.5795 45.721 45.491 46.071 3.2394 56 38 2 0 0 0 0.82752 1 8737 8737 6.2058 0.9089 1 67674 5366 13369 3392 3396 6873 6873 0.01544544855391905 EIKDREEI 8 Unmodified _EIKDREEI_ 0 0 0 L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|56|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 516.272021 1030.52949 -0.06982 -3.6046E-05 0.49929 0.00025777 0.42947 0.00022172 516.2722105105861 42.482 0.5795 45.721 45.491 46.071 3.2394 0.013907 -1.9436E-05 NaN 6.2058 56 38 2 NaN NaN NaN NaN 0 NaN NaN 0 67674 5367 13369 3392 3396 0.01544544855391905 EIKGKQFL 8 Unmodified _EIKGKQFL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS UPN48_class_I_Rep_3 7 481.7870178222656 2 481.78711 961.559667 0.13874 6.6842E-05 -0.058 -2.7944E-05 0.080739 3.8899E-05 481.7868924289438 41.314 0.64673 44.96 44.642 45.289 3.6458 88 64 2 0 0 0 0.82752 1 7505 7505 2.3027 0 1 145630 + 5368 20973 3393 3397 6874 6874 0.07734948311224343 EIKKIPTY 8 Unmodified _EIKKIPTY_ 0 0 0 L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|65|2|sense L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|65|2|sense L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|65|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2953796386719 2 496.294768 990.574983 0.27961 0.00013877 1.3539 0.00067192 1.6335 0.00081069 496.2953260959236 44.729 0.078644 44.729 44.7 44.778 0 7 3 3 0 0 0 0.72333 1 9046 9046 4.756 1.8668 1 1990300 5369 10018 3394 3398 6875 6875 0.07931815108429419 EIKKKQSGK 9 Unmodified _EIKKKQSGK_ 0 0 0 REV__L1MC4_dup16255|chr11:11916394-11916857:+|1.1220913504062984|0.1577283983394289|2.83|151.0|9|2|sense REV__L1MC4_dup16255|chr11:11916394-11916857:+|1.1220913504062984|0.1577283983394289|2.83|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 523.3035888671875 2 523.321848 1044.62914 NaN NaN NaN NaN NaN NaN NaN 79.932 1 83.241 82.741 83.741 3.309 0 0 0 0.38073 1 20002 20002 5.2969 1.3525 1 + 5370 26831 3395 3399 6876 6876 0.10861407259994849 EIKKQLTRRP 10 Unmodified _EIKKQLTRRP_ 0 0 0 REV__ENSG00000106804|ENST00000223642|C5 REV__ENSG00000106804|ENST00000223642|C5 MULTI-MSMS UPN48_class_I_Rep_2 6 634.8932495117188 2 634.893503 1267.77245 0.49752 0.00031587 -0.63262 -0.00040164 -0.13509 -8.577E-05 634.8927554006209 98.012 0.34964 101.79 101.47 101.82 3.779 102 48 3 0 0 0 0.54822 1 23244 23244 5.7319 0 1 699890 + 5371 18341 3396 3400 6877 6877 0.14927834371087556 EIKKRFRQL 9 Unmodified _EIKKRFRQL_ 0 0 0 ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000488868.1_1_1:28537058-28556683:-|nuORF ENST00000488868.1_1_1:28537058-28556683:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.58734130859375 3 406.587418 1216.74043 -0.49903 -0.0002029 0.059434 2.4165E-05 -0.4396 -0.00017873 406.5873931493861 22.655 0.86535 26.359 25.841 26.706 3.7042 103 80 2 0 0 0 0.46085 1 2735 2735 4.5289 1.2092 1 67816 5372 2545 3397 3401 6878 6878 0.14072466687935048 EIKKRFRQL 9 Unmodified _EIKKRFRQL_ 0 0 0 ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000488868.1_1_1:28537058-28556683:-|nuORF ENST00000488868.1_1_1:28537058-28556683:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 406.73480224609375 3 406.587418 1216.74043 -0.49468 -0.00020113 -0.0076503 -3.1105E-06 -0.50233 -0.00020424 406.58747361276386 23.764 0.12134 27.494 27.432 27.554 3.7298 12 9 2 0 0 0 0.12251 1 3010 3010 5.2969 3.2109 1 61220 5373 2545 3397 3401 6879 6879 0.14072466687935048 EIKKRFRQL 9 Unmodified _EIKKRFRQL_ 0 0 0 ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000488868.1_1_1:28537058-28556683:-|nuORF ENST00000488868.1_1_1:28537058-28556683:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.5872802734375 3 406.587418 1216.74043 -1.0001 -0.00040663 0.52908 0.00021512 -0.47104 -0.00019152 406.5876081756519 23.042 0.87704 26.487 26.092 26.969 3.4447 138 81 2 0 0 0 0.48433 2 2845 2845;2897 2.2828 0.82766 1 58141 5374 2545 3397 3401 6880;6881 6880 0.14072466687935048 EIKKRFRQL 9 Unmodified _EIKKRFRQL_ 0 0 0 ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000488868.1_1_1:28537058-28556683:-|nuORF ENST00000488868.1_1_1:28537058-28556683:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 406.587418 1216.74043 -0.49903 -0.0002029 0.059434 2.4165E-05 -0.4396 -0.00017873 406.5873931493861 22.655 0.86535 26.359 25.841 26.706 3.7042 -0.063828 -0.00028117 NaN 4.5289 103 80 2 NaN NaN NaN NaN 0 NaN NaN 0 67816 5375 2545 3397 3401 0.14072466687935048 EIKKRFRQL 9 Unmodified _EIKKRFRQL_ 0 0 0 ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000488868.1_1_1:28537058-28556683:-|nuORF ENST00000488868.1_1_1:28537058-28556683:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 406.587418 1216.74043 -1.0002 -0.00040666 0.3932 0.00015987 -0.60698 -0.00024679 406.58750553888376 23.659 0.23379 27.125 26.99 27.224 3.4655 -0.1846 0.00026664 NaN 5.2969 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 46297 5376 2545 3397 3401 0.14072466687935048 EIKKRFRQL 9 Unmodified _EIKKRFRQL_ 0 0 0 ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000488868.1_1_1:28537058-28556683:-|nuORF ENST00000488868.1_1_1:28537058-28556683:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 406.587418 1216.74043 -1.0001 -0.00040663 0.52908 0.00021512 -0.47104 -0.00019152 406.5876081756519 23.042 0.87704 26.487 26.092 26.969 3.4447 0.063828 0.00029169 NaN 4.5289 138 81 2 NaN NaN NaN NaN 0 NaN NaN 0 58141 5377 2545 3397 3401 0.14072466687935048 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_1 2 499.8270263671875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 15.83 1 19.327 18.827 19.827 3.4968 0 0 0 0.4044 1 913 913 4.756 0 1 + 5378 19287 3398 3402 6882 6882 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_1 2 499.8267517089844 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.188 1 19.711 19.211 20.211 3.5224 0 0 0 0.4044 1 995 995 4.756 0 1 + 5379 19287 3398 3402 6883 6883 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_2 3 499.8265075683594 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.029 1 19.415 18.915 19.915 3.3864 0 0 0 0.4044 1 957 957 4.756 0 1 + 5380 19287 3398 3402 6884 6884 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_2 3 499.8267517089844 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.27 1 19.656 19.156 20.156 3.3864 0 0 0 0.4044 1 1011 1011 4.756 0 1 + 5381 19287 3398 3402 6885 6885 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_2 3 499.82684326171875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.393 1 19.779 19.279 20.279 3.3864 0 0 0 0.4044 1 1038 1038 4.756 0 1 + 5382 19287 3398 3402 6886 6886 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_2 3 499.826904296875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.636 1 20.022 19.522 20.522 3.3864 0 0 0 0.4044 1 1098 1098 4.756 0 1 + 5383 19287 3398 3402 6887 6887 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_3 4 499.826904296875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.256 1 19.618 19.118 20.118 3.3619 0 0 0 0.4044 1 983 983 4.756 0 1 + 5384 19287 3398 3402 6888 6888 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_3 4 499.82684326171875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.377 1 19.739 19.239 20.239 3.3619 0 0 0 0.4044 1 1010 1010 4.756 0 1 + 5385 19287 3398 3402 6889 6889 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_3 4 499.8269958496094 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.497 1 19.859 19.359 20.359 3.3619 0 0 0 0.4044 1 1038 1038 4.756 0 1 + 5386 19287 3398 3402 6890 6890 0.16587489507651298 EIKKRIVI 8 Unmodified _EIKKRIVI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_3 4 499.82684326171875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 17.127 1 20.485 19.985 20.985 3.3581 0 0 0 0.4044 1 1198 1198 4.756 0 1 + 5387 19287 3398 3402 6891 6891 0.16587489507651298 EIKLIDIVPLD 11 Unmodified _EIKLIDIVPLD_ 0 0 0 REV__ENSG00000164002|ENST00000415550|EXO5 REV__ENSG00000164002|ENST00000415550|EXO5 MULTI-MSMS UPN46_class_I_Rep_3 1 634.8781127929688 2 634.379029 1266.7435 0.72592 0.00046051 -2.3134 -0.0014676 -1.5875 -0.0010071 634.8778531197894 107.84 0.53756 107.84 107.75 108.29 0 84 49 3 0 0 0 0.48412 3 26318 26318;26359;26391 8.1555 3.2585 1 26620000 + 5388 20022 3399 3403 6892;6893;6894 6892 0.12080252231430677 EIKLIRLFW 9 Unmodified _EIKLIRLFW_ 0 0 0 REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|29|2|sense REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|29|2|sense MSMS UPN47_class_I_Rep_2 3 406.5838623046875 3 406.585015 1216.73321 NaN NaN NaN NaN NaN NaN NaN 103.53 1 107.06 106.56 107.56 3.5231 0 0 0 0.39887 1 25164 25164 0.96228 0 1 + 5389 25151 3400 3404 6895 6895 0.1335173408749597 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.2907409667969 2 501.290548 1000.56654 0.29022 0.00014549 0.19098 9.5735E-05 0.4812 0.00024122 501.2904979421608 78.494 0.70551 78.494 78.399 79.104 0 153 71 3 0 0 0 0.82752 1 18496 18496 4.3292 0 1 419270 5390 12052 3401 3405 6896 6896 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.2909240722656 2 501.290548 1000.56654 0.29669 0.00014873 0.31571 0.00015826 0.6124 0.00030699 501.29061207079064 80.952 0.46568 80.952 80.643 81.109 0 140 48 4 0 0 0 0.82752 1 19115 19115 2.0598 0 1 1784600 5391 12052 3401 3405 6897 6897 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.29052734375 2 501.290548 1000.56654 0.29915 0.00014996 0.075967 3.8082E-05 0.37512 0.00018804 501.2905088986365 81.693 0.085564 81.693 81.653 81.738 0 16 8 2 0 0 0 0.82752 1 19309 19309 4.3292 0 1 508950 5392 12052 3401 3405 6898 6898 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.2906799316406 2 501.290548 1000.56654 0.30009 0.00015043 0.1313 6.5817E-05 0.43138 0.00021625 501.29051653101754 81.939 0.3699 81.939 81.738 82.108 0 61 36 3 0 0 0 0.82752 1 19418 19418 4.3292 0 1 529970 5393 12052 3401 3405 6899 6899 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 501.29071044921875 2 501.290548 1000.56654 0.20597 0.00010325 0.14325 7.1812E-05 0.34922 0.00017506 501.29050842151423 77.894 1.5433 81.323 79.974 81.518 3.4289 329 145 3 0 0 0 0.82752 1 19237 19237 4.3292 0 1 730250 5394 12052 3401 3405 6900 6900 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 501.2906188964844 2 501.290548 1000.56654 0.28817 0.00014446 0.21591 0.00010823 0.50408 0.00025269 501.2905334702732 76.915 2.3071 80.527 79.814 82.121 3.6116 397 246 2 0 0 0 0.82752 1 18156 18156 4.3292 0 1 426230 5395 12052 3401 3405 6901 6901 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 501.290548 1000.56654 0.21104 0.00010579 0.092235 4.6236E-05 0.30328 0.00015203 501.2904602199684 78.125 0.66719 81.554 81.509 82.176 3.4289 -0.25634 3.2423E-05 NaN 4.3292 117 66 2 NaN NaN NaN NaN 0 NaN NaN 0 378700 5396 12052 3401 3405 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.290548 1000.56654 0.25904 0.00012985 -0.053618 -2.6878E-05 0.20542 0.00010298 501.29043420459806 78.593 0.91415 81.875 81.701 82.615 3.2816 0.064435 -0.00011381 NaN 4.3292 163 91 2 NaN NaN NaN NaN 0 NaN NaN 0 327130 5397 12052 3401 3405 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 501.290548 1000.56654 0.30123 0.000151 0.074985 3.7589E-05 0.37622 0.00018859 501.29043212788747 78.253 0.49483 81.874 81.767 82.262 3.6215 0.063427 1.5129E-05 NaN 4.3292 108 61 2 NaN NaN NaN NaN 0 NaN NaN 0 217700 5398 12052 3401 3405 0.06628261191804086 EIKQKNKN 8 Unmodified _EIKQKNKN_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 501.290548 1000.56654 0.30206 0.00015142 0.23829 0.00011945 0.54035 0.00027087 501.2905536652418 77.928 0.35876 81.55 81.424 81.783 3.6216 0.027936 8.8041E-05 NaN 4.3292 66 38 2 NaN NaN NaN NaN 0 NaN NaN 0 298570 5399 12052 3401 3405 0.06628261191804086 EILCSHKKE 9 Unmodified _EILCSHKKE_ 0 0 0 L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|71|3|sense;L1MB5_dup3161|chr7:105321205-105322132:+|1.0705218537557866|0.0161118987662057|6.05|150.0|10|1|sense;L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|30|2|sense;L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|60|3|sense;L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|10|2|sense;L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|171|3|sense;L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|47|1|sense;L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|26|2|sense;L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|10|1|sense L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|71|3|sense L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|71|3|sense MSMS UPN47_class_I_Rep_2 3 543.74365234375 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 35.563 1 38.974 38.474 39.474 3.4114 0 0 0 0.39598 1 6572 6572 1.6526 0 1 5400 10609 3402 3406 6902 6902 0.0145748173724769 EILDWHYAK 9 Unmodified _EILDWHYAK_ 0 0 0 REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|110|3|anti-sense REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|110|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 587.2979125976562 2 587.798206 1173.58186 0.54851 0.00032242 0.7062 0.0004151 1.2547 0.00073752 587.7983298235123 53.388 0.061882 56.998 56.953 57.015 3.6098 6 4 2 0 0 0 0.12354 1 11184 11184 3.5965 0 1 67050 + 5401 27778 3403 3407 6903 6903 0.002011279889757134 EILELRNYE 9 Unmodified _EILELRNYE_ 0 0 0 L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|5|1|sense L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|5|1|sense L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 589.807373046875 2 589.806228 1177.5979 NaN NaN NaN NaN NaN NaN NaN 29.235 1 32.867 32.367 33.367 3.6316 0 0 0 0.39598 1 4126 4126 1.6526 0.32309 1 5402 9976 3404 3408 6904 6904 0.016207894352419316 EILGIANNR 9 Unmodified _EILGIANNR_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN48_class_I_Rep_2 6 500.2826843261719 2 500.282723 998.550893 0.24385 0.000122 0.79001 0.00039523 1.0339 0.00051722 500.28233494931044 39.357 0.31369 43.087 42.931 43.245 3.7297 44 30 2 0 0 0 0.30034 3 6960 6960;6998;7009 13.906 5.9959 1 71195 5403 3550 3405 3409 6905;6906;6907 6905 0.051559746747557256 EILGIANNR 9 Unmodified _EILGIANNR_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN48_class_I_Rep_3 7 500.2829895019531 2 500.282723 998.550893 0.17068 8.5388E-05 1.0216 0.00051109 1.1923 0.00059648 500.28264466366085 39.383 0.33508 43.038 42.889 43.224 3.6557 43 28 2 0 0 0 0.36392 1 6888 6888 10.074 5.3179 1 60511 5404 3550 3405 3409 6908 6908 0.051559746747557256 EILKSVCTSY 10 Unmodified _EILKSVCTSY_ 0 0 0 REV__nc|ENSG00000116852|O75037-3|KIF21B REV__nc|ENSG00000116852|O75037-3|KIF21B MSMS UPN47_class_I_Rep_1 2 571.7902221679688 2 571.791732 1141.56891 NaN NaN NaN NaN NaN NaN NaN 51.35 1 54.943 54.443 55.443 3.5932 0 0 0 0.53105 1 11339 11339 12.873 2.0731 1 + 5405 18617 3406 3410 6909 6909 0.003789288145981118 EINEKFTEL 9 Unmodified _EINEKFTEL_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MSMS UPN47_class_I_Rep_1 2 561.7879638671875 2 561.787504 1121.56045 0.37192 0.00020894 0.42783 0.00024035 0.79975 0.00044929 561.7878261000398 64.522 0.50188 67.878 67.61 68.112 3.3557 81 53 2 0 0 0 0.32682 1 15326 15326 12.241 0.74595 1 277540 5406 1245 3407 3411 6910 6910 0.0045369816962193 EINEKFTEL 9 Unmodified _EINEKFTEL_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MSMS UPN47_class_I_Rep_1 2 561.787841796875 2 561.787504 1121.56045 NaN NaN NaN NaN NaN NaN NaN 64.848 1 68.203 67.703 68.703 3.3557 0 0 0 0.27207 1 15430 15430 12.241 0.60036 1 5407 1245 3407 3411 6911 6911 0.0045369816962193 EINEKFTEL 9 Unmodified _EINEKFTEL_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MSMS UPN47_class_I_Rep_3 4 561.7879638671875 2 561.787504 1121.56045 0.43227 0.00024284 1.0807 0.00060712 1.513 0.00084996 561.7875668178887 64.957 0.66588 68.137 67.664 68.329 3.1795 113 52 3 0 0 0 0.24936 1 15484 15484 17.113 1.8644 1 354470 5408 1245 3407 3411 6912 6912 0.0045369816962193 EINEKFTEL 9 Unmodified _EINEKFTEL_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-SECPEP UPN47_class_I_Rep_3 4 561.7879638671875 2 561.787504 1121.56045 0.43305 0.00024328 0.27537 0.0001547 0.70842 0.00039798 561.7875436284162 65.229 0.24912 68.408 68.329 68.579 3.1795 31 20 2 0 0 0 0.11642 1 15641 15641 12.241 2.8575 1 132060 5409 1245 3407 3411 6913 6913 0.0045369816962193 EINLFWDNR 9 Unmodified _EINLFWDNR_ 0 0 0 REV__L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|167|2|anti-sense REV__L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|167|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 603.7986450195312 2 603.798737 1205.58292 0.4617 0.00027877 0.026514 1.6009E-05 0.48821 0.00029478 603.7987810810961 43.282 0.61281 46.92 46.598 47.21 3.6385 66 50 2 0 0 0 0.48846 1 7975 7975 1.8442 1.8442 1 132280 + 5410 27297 3408 3412 6914 6914 -0.011646576421071586 EINQNVEIQR 10 Unmodified _EINQNVEIQR_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MSMS UPN48_class_I_Rep_1 5 621.8251342773438 2 621.825483 1241.63641 NaN NaN NaN NaN NaN NaN NaN 32.372 1 35.898 35.398 36.398 3.5266 0 0 0 0.53105 1 4916 4916 2.7352 0.67545 1 5411 5133 3409 3413 6915 6915 0.02526095069765688 EINTEKAAL 9 Unmodified _EINTEKAAL_ 0 0 0 HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|216|2|anti-sense HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|216|2|anti-sense HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|216|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 494.7698669433594 2 494.769114 987.523675 0.18947 9.3746E-05 1.3643 0.00067502 1.5538 0.00076876 494.7697503890662 41.573 0.35492 45.079 44.88 45.235 3.506 48 35 2 0 0 0 0.42249 1 7574 7574 6.7232 0.99131 1 107010 5412 8078 3410 3414 6916 6916 0.029414463436978622 EIPDQRLLR 9 Unmodified _EIPDQRLLR_ 0 0 0 REV__ENST00000432857.2_1_3:9792686-9793638:+|nuORF REV__ENST00000432857.2_1_3:9792686-9793638:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 570.3300170898438 2 570.330205 1138.64586 0.41044 0.00023408 0.029537 1.6846E-05 0.43997 0.00025093 570.3301586135233 48.935 0.58862 52.652 52.405 52.994 3.7175 51 38 2 0 0 0 0.42249 1 9895 9895 6.7232 0 1 101350 + 5413 18520 3411 3415 6917 6917 0.08207908145936926 EIPFVSDLPL 10 Unmodified _EIPFVSDLPL_ 0 0 0 L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|120|2|anti-sense L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|120|2|anti-sense L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|120|2|anti-sense MSMS UPN48_class_I_Rep_1 5 565.3076782226562 2 565.310615 1128.60668 NaN NaN NaN NaN NaN NaN NaN 54.112 1 57.627 57.127 58.127 3.5143 0 0 0 0.53105 1 11425 11425 9.3831 1.7742 1 5414 13710 3412 3416 6918 6918 0.047517630717266 EIQLTNFF 8 Unmodified _EIQLTNFF_ 0 0 0 L1MB7_dup18356|chr15:76220366-76221513:+|1.824017310167476|0.3396548735574581|2.42|151.0|64|1|anti-sense L1MB7_dup18356|chr15:76220366-76221513:+|1.824017310167476|0.3396548735574581|2.42|151.0|64|1|anti-sense L1MB7_dup18356|chr15:76220366-76221513:+|1.824017310167476|0.3396548735574581|2.42|151.0|64|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 506.26092529296875 2 506.260925 1010.5073 0.18347 9.2886E-05 -0.26516 -0.00013424 -0.081688 -4.1356E-05 506.26069283724564 55.881 0.4135 59.359 59.069 59.482 3.4785 38 24 2 0 0 0 0.82752 1 12706 12706 2.0598 0.21551 1 80084 5415 10761 3413 3417 6919 6919 0.0024636517762246513 EIQQQLLHY 9 Unmodified _EIQQQLLHY_ 0 0 0 ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF ENST00000382162.7_1_22:32002284-32014401:+|nuORF ENST00000382162.7_1_22:32002284-32014401:+|nuORF MSMS UPN48_class_I_Rep_2 6 586.3084716796875 2 586.308938 1170.60332 NaN NaN NaN NaN NaN NaN NaN 32.691 1 36.341 35.841 36.841 3.6497 0 0 0 0.39428 1 5076 5076 2.0598 0.40713 1 5416 5410 3414 3418 6920 6920 0.02484513017725476 EIQWRFVH 8 Unmodified _EIQWRFVH_ 0 0 0 REV__nc|ENSG00000140479|P29122-4|PCSK6 REV__nc|ENSG00000140479|P29122-4|PCSK6 MSMS UPN47_class_I_Rep_3 4 557.793701171875 2 557.793258 1113.57196 NaN NaN NaN NaN NaN NaN NaN 24.12 1 27.471 26.971 27.971 3.3509 0 0 0 0.40625 1 3184 3184 2.3027 0.24298 1 + 5417 31996 3415 3419 6921 6921 0.01971984774286284 EIRNETEIF 9 Unmodified _EIRNETEIF_ 0 0 0 REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|26|3|sense REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|26|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 575.7908325195312 2 575.790578 1149.5666 0.54689 0.00031489 0.35651 0.00020527 0.90339 0.00052016 575.79063441806 59.284 0.70879 62.764 62.513 63.221 3.4801 89 44 3 0 0 0 0.23293 1 13007 13007 18.146 0.011366 1 329820 + 5418 25948 3416 3420 6922 6922 -0.002197835988681618 EIRNETEIF 9 Unmodified _EIRNETEIF_ 0 0 0 REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|26|3|sense REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|26|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 575.7907104492188 2 575.790578 1149.5666 0.56152 0.00032332 0.4659 0.00026826 1.0274 0.00059158 575.7906615238765 59.358 0.61837 62.845 62.49 63.108 3.4868 101 41 3 0 0 0 0.17897 2 13016 12971;13016 22.736 1.1993 1 399950 + 5419 25948 3416 3420 6923;6924 6924 -0.002197835988681618 EIRNETEIF 9 Unmodified _EIRNETEIF_ 0 0 0 REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|26|3|sense REV__L1MB4_dup2611|chr5:132946091-132946807:+|1.803441268452937|0.0210335325299919|6.42|151.0|26|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 575.791015625 2 575.790578 1149.5666 0.43921 0.00025289 0.24624 0.00014178 0.68545 0.00039468 575.7906692781484 59.179 0.63652 62.702 62.387 63.023 3.5231 67 42 2 0 0 0 0.17897 1 12865 12865 22.736 1.1993 1 325040 + 5420 25948 3416 3420 6925 6925 -0.002197835988681618 EIRSDLVDPN 10 Unmodified _EIRSDLVDPN_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1 REV__ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MSMS UPN47_class_I_Rep_3 4 579.2945556640625 2 579.293485 1156.57242 0.41581 0.00024088 1.4311 0.00082903 1.8469 0.0010699 579.2939519353071 55.632 1.0025 58.81 58.491 59.494 3.1779 101 65 2 0 0 0 0.41414 1 12733 12733 18.373 18.373 1 249900 + 5421 17641 3417 3421 6926 6926 0.0003931491282855859 EISDLNELLK 10 Unmodified _EISDLNELLK_ 0 0 0 ENSG00000262814|ENST00000333676|MRPL12 ENSG00000262814|ENST00000333676|MRPL12 ENSG00000262814|ENST00000333676|MRPL12 MSMS UPN48_class_I_Rep_3 7 587.3223876953125 2 587.321711 1172.62887 NaN NaN NaN NaN NaN NaN NaN 61.105 1 64.618 64.118 65.118 3.5128 0 0 0 0.53105 1 13476 13476 12.873 6.1494 1 5422 5790 3418 3422 6927 6927 0.04945942749486676 EISELDQFY 9 Unmodified _EISELDQFY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 572.2655029296875 2 572.263862 1142.51317 0.44498 0.00025464 -0.036754 -2.1033E-05 0.40822 0.00023361 572.2638318719252 69.499 0.69839 72.703 72.364 73.062 3.2044 117 54 3 0 0 0 0.20276 1 16886 16886 20.454 1.1966 1 314930 5423 16717 3419 3423 6928 6928 -0.05238581101366435 EISHQWYQY 9 Unmodified _EISHQWYQY_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-MSMS UPN47_class_I_Rep_1 2 627.2826538085938 2 627.28292 1252.55129 -0.062154 -3.8988E-05 -0.82089 -0.00051493 -0.88304 -0.00055392 627.2823735693521 15.557 0.30861 19.054 18.934 19.242 3.4968 51 34 2 0 0 0 0.5015 1 874 874 0.45834 0.45834 1 29868 5424 5493 3420 3424 6929 6929 -0.06488650396045159 EISHQWYQY 9 Unmodified _EISHQWYQY_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-MSMS UPN47_class_I_Rep_3 4 627.2825317382812 2 627.28292 1252.55129 -0.39411 -0.00024722 -0.21798 -0.00013674 -0.61209 -0.00038395 627.282635767814 15.726 0.29348 19.092 18.956 19.25 3.3659 54 31 2 0 0 0 0.5015 1 841 841 0.45834 0.057624 1 44093 5425 5493 3420 3424 6930 6930 -0.06488650396045159 EISLQQAEL 9 Unmodified _EISLQQAEL_ 0 0 0 ENST00000572240.5_1_16:3078109-3079857:-|nuORF;nc|ENSG00000162069|A1A5D9-2|BICDL2;ENSG00000162069|ENST00000572449|BICDL2 ENST00000572240.5_1_16:3078109-3079857:-|nuORF ENST00000572240.5_1_16:3078109-3079857:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 515.7744750976562 2 515.774396 1029.53424 0.28432 0.00014664 -0.078623 -4.0552E-05 0.20569 0.00010609 515.7745743951899 41.244 0.32487 44.995 44.85 45.175 3.7509 42 35 2 0 0 0 0.44742 1 7492 7492 5.2969 0 1 80128 5426 3917 3421 3425 6931 6931 0.02065428998139396 EITAIPKL 8 Unmodified _EITAIPKL_ 0 0 0 L1ME3Cz_dup2077|chr3:17672909-17673221:+|1.0705218537557866|0.0311567364743843|5.1|151.0|19|3|anti-sense L1ME3Cz_dup2077|chr3:17672909-17673221:+|1.0705218537557866|0.0311567364743843|5.1|151.0|19|3|anti-sense L1ME3Cz_dup2077|chr3:17672909-17673221:+|1.0705218537557866|0.0311567364743843|5.1|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_3 7 442.77581787109375 2 442.776211 883.537869 NaN NaN NaN NaN NaN NaN NaN 56.439 1 59.982 59.482 60.482 3.5427 0 0 0 0.39819 1 12055 12055 8.5933 3.3626 1 5427 12767 3422 3426 6932 6932 0.09144143562662066 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 512.3132934570312 2 512.313492 1022.61243 0.25187 0.00012904 0.26422 0.00013536 0.51609 0.0002644 512.3133219258939 51.956 0.88586 55.478 54.915 55.8 3.5227 181 87 3 0 0 0 0.097406 3 10747 10699;10707;10747 34.402 19.563 1 392540 5428 4909 3423 3427 6933;6934;6935 6935 0.10202906374047416 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 512.3137817382812 2 512.313492 1022.61243 0.34541 0.00017696 0.071894 3.6832E-05 0.41731 0.00021379 512.3133794588992 51.842 0.49457 55.481 55.35 55.845 3.639 82 53 3 0 0 0 0.097406 2 10714 10714;10752 34.402 14.243 1 430650 5429 4909 3423 3427 6936;6937 6936 0.10202906374047416 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_2 6 512.313720703125 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 51.583 1 55.251 54.751 55.751 3.6679 0 0 0 0.32573 1 10644 10644 9.3831 4.6271 1 5430 4909 3423 3427 6938 6938 0.10202906374047416 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_2 6 512.3131713867188 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 51.701 1 55.34 54.84 55.84 3.639 0 0 0 0.058622 1 10680 10680 34.402 19.563 1 5431 4909 3423 3427 6939 6939 0.10202906374047416 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_3 7 512.3134155273438 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 51.777 1 55.388 54.888 55.888 3.6105 0 0 0 0.10941 1 10642 10642 22.736 7.898 1 5432 4909 3423 3427 6940 6940 0.10202906374047416 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_3 7 512.3133544921875 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 51.906 1 55.504 55.004 56.004 3.5979 0 0 0 0.058622 1 10679 10679 34.402 15.145 1 5433 4909 3423 3427 6941 6941 0.10202906374047416 EITPPVVLR 9 Unmodified _EITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_3 7 512.3132934570312 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 52.059 1 55.657 55.157 56.157 3.5979 0 0 0 0.036836 1 10723 10723 41.84 21.386 1 5434 4909 3423 3427 6942 6942 0.10202906374047416 EITPTKKSA 9 Unmodified _EITPTKKSA_ 0 0 0 nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 MSMS UPN48_class_I_Rep_2 6 487.7795104980469 2 487.779482 973.544411 NaN NaN NaN NaN NaN NaN NaN 53.862 1 57.444 56.944 57.944 3.5817 0 0 0 0.37476 1 11329 11329 6.7232 1.9672 1 5435 4327 3424 3428 6943 6943 0.056580367233777906 EITRIEMES 9 Unmodified _EITRIEMES_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K9071Rfs*7|1|0.03|ENSG00000181143|chr19:8949560-8949560|G/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS UPN47_class_I_Rep_3 4 554.1759643554688 2 554.271164 1106.52777 NaN NaN NaN NaN NaN NaN NaN 20.998 1 24.348 23.848 24.848 3.3496 0 0 0 0.39518 1 2272 2272 1.8442 1.0506 1 5436 4908 3425 3429 6944 6944 -0.02122832224904414 EITRKGLEY 9 Unmodified _EITRKGLEY_ 0 0 0 Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|20|2|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|20|2|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.8216552734375 2 554.803488 1107.59242 0.38931 0.00021599 -0.11591 -6.4306E-05 0.2734 0.00015168 554.8033776084967 56.57 0.31701 59.742 59.53 59.847 3.1721 19 16 2 0 0 0 0.39745 1 12980 12980 8.1555 0.54658 1 58770 5437 33068 3426 3430 6945 6945 0.0429311064342528 EITYLGHF 8 Unmodified _EITYLGHF_ 0 0 0 L1M1_dup6798|chr10:74361204-74362902:-|1.03550425678973|0.0248706214989718|5.38|151.0|85|2|anti-sense L1M1_dup6798|chr10:74361204-74362902:-|1.03550425678973|0.0248706214989718|5.38|151.0|85|2|anti-sense L1M1_dup6798|chr10:74361204-74362902:-|1.03550425678973|0.0248706214989718|5.38|151.0|85|2|anti-sense MSMS UPN47_class_I_Rep_1 2 490.235107421875 2 490.247818 978.481082 NaN NaN NaN NaN NaN NaN NaN 37.872 1 41.537 41.037 42.037 3.6652 0 0 0 0.40581 1 7237 7237 2.8892 0 1 5438 8606 3427 3431 6946 6946 -0.009019039938380047 EIVHAFGGH 9 Unmodified _EIVHAFGGH_ 0 0 0 REV__ENSG00000152404|ENST00000282251|CWF19L2 REV__ENSG00000152404|ENST00000282251|CWF19L2 MULTI-SECPEP UPN48_class_I_Rep_1 5 483.6464538574219 2 483.743234 965.471915 0.12917 6.2486E-05 0.32146 0.0001555 0.45063 0.00021799 483.7433379460479 49.684 0.58571 53.209 52.945 53.531 3.5246 48 36 2 0 0 0 0.11959 1 10046 10046 7.9102 0.62092 1 89182 + 5439 19679 3428 3432 6947 6947 -0.01220252559517121 EIVKGKKT 8 Unmodified _EIVKGKKT_ 0 0 0 HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|40|2|sense HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|40|2|sense HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|40|2|sense MSMS UPN47_class_I_Rep_2 3 452.2691345214844 2 451.78711 901.559667 NaN NaN NaN NaN NaN NaN NaN 116.42 1 119.92 119.42 120.42 3.4965 0 0 0 0.40753 1 28422 28422 0.6015 0 1 5440 7920 3429 3433 6948 6948 0.10494948311247754 EIVLEKKV 8 Unmodified _EIVLEKKV_ 0 0 0 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 MSMS UPN47_class_I_Rep_1 2 479.3028259277344 2 479.302593 956.590633 NaN NaN NaN NaN NaN NaN NaN 23.46 1 27.164 26.664 27.664 3.7042 0 0 0 0.40746 1 2902 2902 0.69038 0 1 + 5441 17989 3430 3434 6949 6949 0.11060101625480456 EIVLQIYP 8 Unmodified _EIVLQIYP_ 0 0 0 REV__HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|32|2|sense REV__HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|32|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.7905578613281 2 487.781493 973.548434 0.2783 0.00013575 -0.20158 -9.8326E-05 0.076719 3.7422E-05 487.7813436813544 75.877 0.59579 79.198 78.911 79.506 3.3216 106 59 2 0 0 0 0.82752 1 18826 18826 11.64 0 1 155100 + 5442 23817 3431 3435 6950 6950 0.0606012621709624 EIWDYVKKL 9 Unmodified _EIWDYVKKL_ 0 0 0 L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|54|3|sense L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|54|3|sense L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|54|3|sense MSMS UPN48_class_I_Rep_1 5 597.3336181640625 2 597.331882 1192.64921 NaN NaN NaN NaN NaN NaN NaN 50.75 1 54.275 53.775 54.775 3.5246 0 0 0 0.39518 1 10396 10396 1.8442 0.19162 1 5443 13563 3432 3436 6951 6951 0.060591581999460686 EIWWLVLY 8 Unmodified _EIWWLVLY_ 0 0 0 HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|224|2|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|224|2|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|224|2|anti-sense MSMS UPN47_class_I_Rep_3 4 561.30517578125 2 561.305136 1120.59572 NaN NaN NaN NaN NaN NaN NaN 54.989 1 58.167 57.667 58.667 3.1779 0 0 0 0.40604 1 12530 12530 2.5775 0 1 5444 8252 3433 3437 6952 6952 0.04024405488098637 EIYDVQWW 8 Unmodified _EIYDVQWW_ 0 0 0 REV__HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|95|3|sense REV__HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|95|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.768798828125 2 569.763832 1137.51311 0.45509 0.00025929 -0.70801 -0.0004034 -0.25292 -0.0001441 570.266222045043 79.661 0.41182 79.661 79.485 79.897 0 66 37 3 0 0 0 0.82752 1 18705 18705 2.5775 0 1 150460 + 5445 23890 3434 3438 6953 6953 -0.05014536310727635 EIYEGGGVKNV 11 Unmodified _EIYEGGGVKNV_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN48_class_I_Rep_1 5 582.7970581054688 2 582.798403 1163.58225 NaN NaN NaN NaN NaN NaN NaN 112.4 1 116.03 115.53 116.53 3.6321 0 0 0 0.38417 1 27276 27276 1.1933 0.39971 1 + 5446 19771 3435 3439 6954 6954 0.007005029181982536 EIYEYIIFR 9 Unmodified _EIYEYIIFR_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MSMS UPN48_class_I_Rep_1 5 623.331298828125 2 623.329339 1244.64412 NaN NaN NaN NaN NaN NaN NaN 71.243 1 74.709 74.209 75.209 3.466 0 0 0 0.27207 1 16643 16643 12.241 5.5175 1 5447 3549 3436 3440 6955 6955 0.03158854337311823 EIYEYIIFR 9 Unmodified _EIYEYIIFR_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MSMS UPN48_class_I_Rep_1 5 623.3290405273438 2 623.329339 1244.64412 NaN NaN NaN NaN NaN NaN NaN 71.348 1 74.814 74.314 75.314 3.466 0 0 0 0.27207 1 16675 16675 12.241 5.5175 1 5448 3549 3436 3440 6956 6956 0.03158854337311823 EIYEYIIFR 9 Unmodified _EIYEYIIFR_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS UPN48_class_I_Rep_2 6 623.328857421875 2 623.329339 1244.64412 0.48553 0.00030265 0.071237 4.4404E-05 0.55677 0.00034705 623.3291419309109 71.174 0.28961 74.725 74.614 74.903 3.5505 47 29 3 0 0 0 0.32682 1 16588 16588 12.241 8.6442 1 80352 5449 3549 3436 3440 6957 6957 0.03158854337311823 EIYEYIIFR 9 Unmodified _EIYEYIIFR_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS UPN48_class_I_Rep_3 7 623.3287353515625 2 623.329339 1244.64412 0.64862 0.0004043 -0.50373 -0.00031399 0.14489 9.0315E-05 623.328828548438 71.245 0.38485 74.764 74.508 74.893 3.5185 57 36 2 0 0 0 0.19147 2 16495 16495;16531 21.537 12.792 1 139530 5450 3549 3436 3440 6958;6959 6958 0.03158854337311823 EIYGFNGKYF 10 Unmodified _EIYGFNGKYF_ 0 0 0 MLT1L_dup10000|chr16:20716929-20717472:-|1.5065739819262578|0.2198408967520004|2.78|151.0|9|2|sense MLT1L_dup10000|chr16:20716929-20717472:-|1.5065739819262578|0.2198408967520004|2.78|151.0|9|2|sense MLT1L_dup10000|chr16:20716929-20717472:-|1.5065739819262578|0.2198408967520004|2.78|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 619.2974243164062 2 619.298039 1236.58152 NaN NaN NaN NaN NaN NaN NaN 62.645 1 66.155 65.655 66.655 3.5104 0 0 0 0.53105 1 13941 13941 4.897 0 1 5451 16483 3437 3441 6960 6960 -0.027302917308816177 EIYGGSDSRF 10 Unmodified _EIYGGSDSRF_ 0 0 0 nc|ENSG00000115524|O75533-2|SF3B1;ENSG00000115524|ENST00000335508|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 MULTI-MSMS UPN48_class_I_Rep_1 5 565.7597045898438 2 565.759278 1129.504 0.45397 0.00025684 -0.4791 -0.00027106 -0.025129 -1.4217E-05 565.7588450519755 38.761 0.42217 42.266 42.08 42.502 3.5048 54 35 2 0 0 0 0.49738 2 6743 6743;6793 12.175 6.8779 1 88325 5452 2129 3438 3442 6961;6962 6961 -0.055569296670455515 EIYGGSDSRF 10 Unmodified _EIYGGSDSRF_ 0 0 0 nc|ENSG00000115524|O75533-2|SF3B1;ENSG00000115524|ENST00000335508|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 MSMS UPN48_class_I_Rep_2 6 565.7596435546875 2 565.759278 1129.504 NaN NaN NaN NaN NaN NaN NaN 38.452 1 42.169 41.669 42.669 3.7164 0 0 0 0.53105 1 6704 6704 15.739 10.442 1 5453 2129 3438 3442 6963 6963 -0.055569296670455515 EIYGGSDSRF 10 Unmodified _EIYGGSDSRF_ 0 0 0 nc|ENSG00000115524|O75533-2|SF3B1;ENSG00000115524|ENST00000335508|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 MSMS UPN48_class_I_Rep_2 6 565.7583618164062 2 565.759278 1129.504 NaN NaN NaN NaN NaN NaN NaN 38.676 1 42.406 41.906 42.906 3.7297 0 0 0 0.53105 1 6770 6770 2.4985 0.65425 1 5454 2129 3438 3442 6964 6964 -0.055569296670455515 EIYGGSDSRF 10 Unmodified _EIYGGSDSRF_ 0 0 0 nc|ENSG00000115524|O75533-2|SF3B1;ENSG00000115524|ENST00000335508|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 MSMS UPN48_class_I_Rep_3 7 565.7583618164062 2 565.759278 1129.504 NaN NaN NaN NaN NaN NaN NaN 38.474 1 42.134 41.634 42.634 3.6595 0 0 0 0.53105 1 6616 6616 6.1918 3.4567 1 5455 2129 3438 3442 6965 6965 -0.055569296670455515 EIYGGSDSRF 10 Unmodified _EIYGGSDSRF_ 0 0 0 nc|ENSG00000115524|O75533-2|SF3B1;ENSG00000115524|ENST00000335508|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 nc|ENSG00000115524|O75533-2|SF3B1 MSMS UPN48_class_I_Rep_3 7 565.7589721679688 2 565.759278 1129.504 NaN NaN NaN NaN NaN NaN NaN 38.602 1 42.262 41.762 42.762 3.6595 0 0 0 0.53105 1 6654 6654 7.1017 1.8048 1 5456 2129 3438 3442 6966 6966 -0.055569296670455515 EIYIFCDDI 9 Unmodified _EIYIFCDDI_ 0 0 0 REV__Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|67|3|anti-sense REV__Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_3 7 565.3220825195312 2 565.757358 1129.50016 NaN NaN NaN NaN NaN NaN NaN 38.389 1 42.049 41.549 42.549 3.6595 0 0 0 0.38639 1 6591 6591 3.9444 0.94915 1 + 5457 32443 3439 3443 6967 6967 -0.05940735485114601 EIYIPYWV 8 Unmodified _EIYIPYWV_ 0 0 0 REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|15|2|sense REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.2830810546875 2 541.781493 1081.54843 -0.21562 -0.00011682 -0.45274 -0.00024529 -0.66836 -0.00036211 541.7811657899888 29.189 0.35472 32.512 32.332 32.686 3.3235 36 28 2 0 0 0 0.82752 2 4657 4657;4659 2.5775 0.51773 1 55208 + 5458 27418 3440 3444 6968;6969 6968 0.010921262170768387 EIYIPYWV 8 Unmodified _EIYIPYWV_ 0 0 0 REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|15|2|sense REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|15|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 541.781493 1081.54843 0.47005 0.00025466 1.4466 0.00078373 1.9166 0.0010384 542.2833719933798 28.828 0.18094 32.378 32.24 32.421 3.5499 -0.066921 0.0014314 NaN 2.5775 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 88299 + 5459 27418 3440 3444 0.010921262170768387 EIYLENIFG 9 Unmodified _EIYLENIFG_ 0 0 0 L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|85|2|sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|85|2|sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|85|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.2796630859375 2 549.279315 1096.54408 0.47264 0.00025961 -0.041067 -2.2557E-05 0.43157 0.00023705 549.2792563958092 84.62 0.57266 87.982 87.605 88.177 3.3615 124 71 2 0 0 0 0.47197 1 21154 21154 3.5965 0.31518 1 208700 5460 15007 3441 3445 6970 6970 -0.00033382996502950846 EKAFGKIQY 9 Unmodified _EKAFGKIQY_ 0 0 0 L1MC3_dup498|chr1:173991294-173991808:-|1.952682556441642|0.0416677666818103|5.55|151.0|2|1|sense L1MC3_dup498|chr1:173991294-173991808:-|1.952682556441642|0.0416677666818103|5.55|151.0|2|1|sense L1MC3_dup498|chr1:173991294-173991808:-|1.952682556441642|0.0416677666818103|5.55|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 542.2950439453125 2 542.295299 1082.57605 0.43425 0.00023549 -0.40271 -0.00021839 0.031537 1.7103E-05 542.2949751946853 48.253 0.54275 51.887 51.66 52.203 3.6339 62 36 2 0 0 0 0.056917 2 9558 9558;9604 46.021 1.6139 1 123220 5461 11351 3442 3446 6971;6972 6971 0.038060294773458736 EKDYWYKFG 9 Unmodified _EKDYWYKFG_ 0 0 0 REV__ENSG00000025293|ENST00000374012|PHF20 REV__ENSG00000025293|ENST00000374012|PHF20 MSMS UPN48_class_I_Rep_3 7 618.28759765625 2 618.290214 1234.56587 NaN NaN NaN NaN NaN NaN NaN 65.042 1 68.55 68.05 69.05 3.5077 0 0 0 0.38639 1 14668 14668 3.9444 1.2092 1 + 5462 17618 3443 3447 6973 6973 -0.042025782479413465 EKEEILPH 8 Unmodified _EKEEILPH_ 0 0 0 L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|163|3|sense L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|163|3|sense L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|163|3|sense MSMS UPN46_class_I_Rep_3 1 497.76483154296875 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 117.25 1 117.25 116.75 117.75 0 0 0 0 0.40738 1 29057 29057 0.79363 0 1 5463 14546 3444 3448 6974 6974 0.01609463689283075 EKEHTHSY 8 Unmodified _EKEHTHSY_ 0 0 0 ENST00000472260.1_1_2:169713171-169721477:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN ENST00000472260.1_1_2:169713171-169721477:+|nuORF ENST00000472260.1_1_2:169713171-169721477:+|nuORF MSMS UPN47_class_I_Rep_1 2 515.3015747070312 2 515.733063 1029.45157 NaN NaN NaN NaN NaN NaN NaN 61.348 1 64.729 64.229 65.229 3.3815 0 0 0 0.40659 1 14380 14380 1.8442 0 1 5464 3979 3445 3449 6975 6975 -0.06197468009986551 EKERVVAKV 9 Unmodified _EKERVVAKV_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS UPN47_class_I_Rep_3 4 529.3220825195312 2 529.321848 1056.62914 -0.19269 -0.00010199 0.18436 9.7585E-05 -0.0083297 -4.4091E-06 529.3218224696886 34.066 0.50373 37.34 37.061 37.564 3.2748 48 34 2 0 0 0 0.47763 1 6090 6090 2.9952 0.26005 1 63034 + 5465 17743 3446 3450 6976 6976 0.10309407260001535 EKERVVAKV 9 Unmodified _EKERVVAKV_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MATCH UPN47_class_I_Rep_1 2 2 529.321848 1056.62914 -0.09325 -4.9359E-05 -0.28634 -0.00015157 -0.37959 -0.00020093 529.8232316553268 33.733 0.076756 37.431 37.359 37.436 3.6983 0.045285 -0.00041514 NaN 2.9952 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 18419 + 5466 17743 3446 3450 0.10309407260001535 EKFRFQQR 8 Unmodified _EKFRFQQR_ 0 0 0 REV__chr9:93562304-93563005|120|13.75|0.84|4.04|+|1|FAM120A,None|1 REV__chr9:93562304-93563005|120|13.75|0.84|4.04|+|1|FAM120A,None|1 MSMS UPN48_class_I_Rep_3 7 569.8085327148438 2 569.809439 1137.60433 NaN NaN NaN NaN NaN NaN NaN 28.409 1 32.151 31.651 32.651 3.7424 0 0 0 0.40625 1 3858 3858 2.3027 0 1 + 5467 17459 3447 3451 6977 6977 0.04102772177270708 EKFSKQMENR 10 Unmodified _EKFSKQMENR_ 0 0 0 L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|95|3|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|95|3|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|95|3|sense MSMS UPN47_class_I_Rep_2 3 432.885009765625 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 101.87 1 105.39 104.89 105.89 3.5151 0 0 0 0.53105 1 24829 24829 1.4551 0.34536 1 5468 13738 3448 3452 6978 6978 -0.006769608022977991 EKGNLYTVV 9 Unmodified _EKGNLYTVV_ 0 0 0 L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|11|1|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|11|1|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.88641357421875 2 511.779482 1021.54441 0.29171 0.00014929 -0.44309 -0.00022677 -0.15139 -7.7476E-05 511.77943288835326 32.796 0.3702 36.323 36.085 36.456 3.5266 54 39 2 0 0 0 0.49187 1 5039 5039 1.4819 0 1 84035 5469 14028 3449 3453 6979 6979 0.034500367233818 EKGQEKNMK 9 Unmodified _EKGQEKNMK_ 0 0 0 REV__ENSG00000170689|ENST00000311177|HOXB9 REV__ENSG00000170689|ENST00000311177|HOXB9 MSMS UPN48_class_I_Rep_3 7 546.2770385742188 2 546.279323 1090.54409 NaN NaN NaN NaN NaN NaN NaN 38.343 1 42.003 41.503 42.503 3.6595 0 0 0 0.39036 1 6578 6578 2.9952 0.93549 1 + 5470 20375 3450 3454 6980 6980 0.002442937318846816 EKHSIWAEY 9 Unmodified _EKHSIWAEY_ 0 0 0 L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|237|1|anti-sense L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|237|1|anti-sense L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|237|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.7804565429688 2 581.780013 1161.54547 -0.038669 -2.2497E-05 0.18105 0.00010533 0.14238 8.2833E-05 581.7800548489878 38.555 2.2626 42.22 41.78 44.043 3.6652 361 161 4 0 0 0 0.49187 1 7901 7901 1.4819 0.15237 1 896330 5471 14600 3451 3455 6981 6981 -0.028837489077204737 EKIEEKVWH 9 Unmodified _EKIEEKVWH_ 0 0 0 REV__L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|91|3|sense REV__L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|91|3|sense MSMS UPN47_class_I_Rep_1 2 599.3167114257812 2 599.316763 1196.61897 NaN NaN NaN NaN NaN NaN NaN 45.179 1 48.879 48.379 49.379 3.6999 0 0 0 0.4007 1 9465 9465 0.52476 0 1 + 5472 25303 3452 3456 6982 6982 0.028527995347531032 EKIIAPAEQKI 11 Unmodified _EKIIAPAEQKI_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MULTI-MSMS UPN48_class_I_Rep_1 5 620.36767578125 2 620.368995 1238.72344 0.42489 0.00026359 -1.0829 -0.00067177 -0.65797 -0.00040818 620.3677241639448 107.88 0.25958 111.51 111.44 111.7 3.6313 39 20 3 0 0 0 0.37961 1 26065 26065 10.8 1.4164 1 5660300 5473 5186 3453 3457 6983 6983 0.11362501291455374 EKIIAPAEQKI 11 Unmodified _EKIIAPAEQKI_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 620.368995 1238.72344 0.51157 0.00031736 -1.1881 -0.00073704 -0.67649 -0.00041967 620.3679047047864 107.9 0.13115 111.44 111.37 111.51 3.5382 -0.066251 7.4345E-07 NaN 10.8 25 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3333200 5474 5186 3453 3457 0.11362501291455374 EKIIAPAEQKI 11 Unmodified _EKIIAPAEQKI_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 620.368995 1238.72344 0.49278 0.00030571 -1.2408 -0.00076978 -0.74807 -0.00046408 620.8702798451558 107.96 0.11688 111.63 111.59 111.71 3.6746 0.12923 -6.4752E-05 NaN 10.8 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1103500 5475 5186 3453 3457 0.11362501291455374 EKILPNLPVLP 11 Unmodified _EKILPNLPVLP_ 0 0 0 L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|33|2|sense L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|33|2|sense L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|33|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 616.9187622070312 2 616.884281 1231.75401 0.423 0.00026094 -2.2649 -0.0013972 -1.8419 -0.0011363 616.8823066123252 108.13 0.11806 111.76 111.68 111.8 3.6313 16 12 2 0 0 0 22.551 1 26131 26131 11.495 3.3392 1 804210 5476 8501 3454 3458 6984 6984 0.14740279676493628 EKILVRKF 8 Unmodified _EKILVRKF_ 0 0 0 REV__ENSG00000139687|ENST00000267163|RB1 REV__ENSG00000139687|ENST00000267163|RB1 MSMS UPN48_class_I_Rep_2 6 516.8322143554688 2 516.831852 1031.64915 NaN NaN NaN NaN NaN NaN NaN 68.975 1 72.497 71.997 72.997 3.5216 0 0 0 0.40643 1 15946 15946 2.0598 0 1 + 5477 19318 3455 3459 6985 6985 0.1345920299061163 EKIRRPIVTV 10 Unmodified _EKIRRPIVTV_ 0 0 0 REV__ENSG00000144815|ENST00000273347|NXPE3 REV__ENSG00000144815|ENST00000273347|NXPE3 MULTI-SECPEP UPN47_class_I_Rep_2 3 605.712646484375 2 605.885147 1209.75574 0.63463 0.00038451 -3.1341 -0.0018989 -2.4994 -0.0015144 605.8835887870488 107.43 0.085892 110.96 110.89 110.98 3.5345 5 3 2 0 0 0 0.84575 1 25983 25983 5.7319 0 1 1543300 + 5478 19494 3456 3460 6986 6986 0.15925333485120063 EKITIDKKPKP 11 Unmodified _EKITIDKKPKP_ 0 0 0 REV__L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|57|3|sense REV__L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|57|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 648.3936157226562 2 648.89792 1295.78129 0.50194 0.00032571 -4.1811 -0.0027131 -3.6792 -0.0023874 648.8952350145936 107.49 0.18653 111.17 110.99 111.18 3.6783 25 20 2 0 0 0 22.551 1 25394 25394 7.1017 0 1 4205000 + 5479 24397 3457 3461 6987 6987 0.14522763216882595 EKIWKAVRYRK 11 Unmodified _EKIWKAVRYRK_ 0 0 0 REV__L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|38|3|sense REV__L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|38|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 493.35333251953125 3 492.964777 1475.8725 0.27315 0.00013466 -0.32288 -0.00015917 -0.049731 -2.4516E-05 493.3000369979535 108.2 0.24904 111.83 111.65 111.9 3.6355 29 23 2 0 0 0 22.551 1 26547 26547 1.0136 0 1 883550 + 5480 25506 3458 3462 6988 6988 0.1536007170486755 EKKAKKVRF 9 Unmodified _EKKAKKVRF_ 0 0 0 nc|ENSG00000077279|O43602-2|DCX;nc|ENSG00000077279|O43602|DCX;ENSG00000077279|ENST00000636035|DCX;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1 nc|ENSG00000077279|O43602-2|DCX nc|ENSG00000077279|O43602-2|DCX MSMS UPN47_class_I_Rep_2 3 567.3640747070312 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 46.548 1 49.9 49.4 50.4 3.3515 0 0 0 0.39518 1 9912 9912 1.8442 0.19162 1 5481 1172 3459 3463 6989 6989 0.14701679284939928 EKKECRRDH 9 Unmodified _EKKECRRDH_ 0 0 0 nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1 nc|ENSG00000161011|Q13501-2|SQSTM1 nc|ENSG00000161011|Q13501-2|SQSTM1 MSMS UPN47_class_I_Rep_2 3 600.798583984375 2 600.798746 1199.58294 NaN NaN NaN NaN NaN NaN NaN 45.705 1 49.058 48.558 49.558 3.3534 0 0 0 0.39598 1 9656 9656 1.6526 0.17072 1 5482 3895 3460 3464 6990 6990 -0.008869809137422635 EKKKRGPG 8 Unmodified _EKKKRGPG_ 0 0 0 HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|98|3|sense HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|98|3|sense HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|98|3|sense MSMS UPN48_class_I_Rep_2 6 450.2742614746094 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 84.986 1 88.68 88.18 89.18 3.6937 0 0 0 0.40738 1 20212 20212 0.79363 0 1 5483 8177 3461 3465 6991 6991 0.08152313228526964 EKKKRVQL 8 Unmodified _EKKKRVQL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS UPN47_class_I_Rep_1 2 514.83154296875 2 514.832383 1027.65021 -0.2463 -0.0001268 -0.13036 -6.7111E-05 -0.37666 -0.00019391 514.8322352863793 13.632 0.30209 17.089 16.984 17.286 3.457 76 36 3 0 0 0 0.82752 1 366 366 15.847 0 1 77038 5484 1934 3462 3466 6992 6992 0.13749417359508698 EKKKTHQK 8 Unmodified _EKKKTHQK_ 0 0 0 L1PA7_dup12097|chr17:31119241-31120721:-|1.0648980385685625|0.0261460751412192|5.35|151.0|47|3|sense L1PA7_dup12097|chr17:31119241-31120721:-|1.0648980385685625|0.0261460751412192|5.35|151.0|47|3|sense L1PA7_dup12097|chr17:31119241-31120721:-|1.0648980385685625|0.0261460751412192|5.35|151.0|47|3|sense MSMS UPN47_class_I_Rep_3 4 513.806884765625 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 68.925 1 72.123 71.623 72.623 3.1977 0 0 0 0.40625 1 16777 16777 2.3027 0 1 5485 14746 3463 3467 6993 6993 0.08640253945759468 EKKKTYIMKP 10 Unmodified _EKKKTYIMKP_ 0 0 0 ENST00000272793.9_1_2:170938445-170938493:+|nuORF ENST00000272793.9_1_2:170938445-170938493:+|nuORF ENST00000272793.9_1_2:170938445-170938493:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 633.3781127929688 2 633.367941 1264.72133 0.43796 0.00027739 1.3354 0.00084579 1.7733 0.0011232 633.368202612984 89.498 0.3197 93.123 93.084 93.404 3.6255 43 33 2 0 0 0 0.56317 1 21523 21523 3.2813 1.7994 1 240710 5486 6012 3464 3468 6994 6994 0.09955749281994031 EKKKTYIMKP 10 Unmodified _EKKKTYIMKP_ 0 0 0 ENST00000272793.9_1_2:170938445-170938493:+|nuORF ENST00000272793.9_1_2:170938445-170938493:+|nuORF ENST00000272793.9_1_2:170938445-170938493:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 633.888671875 2 633.367941 1264.72133 0.63885 0.00040463 2.509 0.0015891 3.1479 0.0019938 633.3695128891123 86.076 0.11169 89.846 89.799 89.911 3.7701 20 13 2 0 0 0 0.84575 1 20447 20447 3.2813 0.28607 1 115590 5487 6012 3464 3468 6995 6995 0.09955749281994031 EKKLGVWH 8 Unmodified _EKKLGVWH_ 0 0 0 REV__ENSG00000110848|ENST00000228434|CD69 REV__ENSG00000110848|ENST00000228434|CD69 MSMS UPN47_class_I_Rep_1 2 498.7856140136719 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 20.739 1 24.382 23.882 24.882 3.6436 0 0 0 0.40753 1 2136 2136 0.6015 0.076735 1 + 5488 18441 3465 3469 6996 6996 0.05729483888330833 EKKLPVKN 8 Unmodified _EKKLPVKN_ 0 0 0 L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|173|3|sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|173|3|sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|173|3|sense MSMS UPN47_class_I_Rep_1 2 478.30133056640625 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 63.24 1 66.599 66.099 67.099 3.3595 0 0 0 0.40659 1 14950 14950 1.8442 0 1 5489 9879 3466 3470 6997 6997 0.10710637202566886 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN46_class_I_Rep_3 1 626.3892822265625 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 107.34 1 107.34 106.84 107.84 0 0 0 0 0.53105 1 26182 26182 3.5965 0 1 5490 6480 3467 3471 6998 6998 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN47_class_I_Rep_1 2 626.3877563476562 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.83 1 107.6 107.1 108.1 3.7627 0 0 0 0.53105 1 25527 25527 3.5965 0 1 5491 6480 3467 3471 6999 6999 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN47_class_I_Rep_1 2 626.389892578125 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.18 1 107.94 107.44 108.44 3.7627 0 0 0 0.53105 1 25599 25599 3.5965 0 1 5492 6480 3467 3471 7000 7000 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 626.3952026367188 2 626.389199 1250.76385 0.63452 0.00039746 -1.4781 -0.00092588 -0.84359 -0.00052842 626.3884508712663 103.74 0.42326 107.27 107.19 107.61 3.5289 102 66 2 0 0 0 0.56033 2 25256 25256;25263 3.5965 0 1 75588000 5493 6480 3467 3471 7001;7002 7001 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN47_class_I_Rep_3 4 626.3869018554688 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.9 1 107.42 106.92 107.92 3.5205 0 0 0 0.53105 1 25485 25485 3.5965 0 1 5494 6480 3467 3471 7003 7003 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN47_class_I_Rep_3 4 626.3887329101562 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.43 1 107.95 107.45 108.45 3.5205 0 0 0 0.53105 1 25599 25599 3.5965 0 1 5495 6480 3467 3471 7004 7004 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 626.3899536132812 2 626.389199 1250.76385 0.42783 0.00026799 -1.2869 -0.00080613 -0.85912 -0.00053814 626.3887012251098 105.79 0.14785 109.42 109.32 109.47 3.6277 32 19 2 0 0 0 0.56333 1 25475 25475 1.4819 0 1 229780 5496 6480 3467 3471 7005 7005 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN48_class_I_Rep_1 5 626.3929443359375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.98 1 107.61 107.11 108.11 3.6209 0 0 0 0.53105 1 25062 25062 3.5965 0 1 5497 6480 3467 3471 7006 7006 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 626.3877563476562 2 626.389199 1250.76385 0.42798 0.00026808 -0.14193 -8.8904E-05 0.28605 0.00017918 626.8890022491757 104.18 0.068214 107.8 107.77 107.84 3.6209 13 10 2 0 0 0 0.84575 1 25101 25101 3.5965 0 1 19423000 5498 6480 3467 3471 7007 7007 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 626.889404296875 2 626.389199 1250.76385 0.49472 0.00030989 -1.1736 -0.00073515 -0.67891 -0.00042526 626.8894784672558 105.75 0.10748 109.43 109.37 109.47 3.6834 16 13 2 0 0 0 0.56333 1 25024 25024 1.4819 0 1 169480 5499 6480 3467 3471 7008 7008 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN48_class_I_Rep_3 7 626.3870849609375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.4 1 107.15 106.65 107.65 3.7434 0 0 0 0.53105 1 24423 24423 3.5965 0 1 5500 6480 3467 3471 7009 7009 0.14849467681892747 EKKLTFILLF 10 Unmodified _EKKLTFILLF_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MSMS UPN48_class_I_Rep_3 7 626.3948974609375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.81 1 107.55 107.05 108.05 3.7434 0 0 0 0.53105 1 24513 24513 3.5965 0 1 5501 6480 3467 3471 7010 7010 0.14849467681892747 EKKQRKFD 8 Unmodified _EKKQRKFD_ 0 0 0 CBFB-MYH11|3|fusion;CBFB-MYH11|4|fusion;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 CBFB-MYH11|3|fusion;nc|ENSG00000133392|P35749-4|MYH11 nc|ENSG00000133392|P35749-4|MYH11 MSMS UPN48_class_I_Rep_1 5 539.62158203125 2 539.803823 1077.59309 NaN NaN NaN NaN NaN NaN NaN 84.462 1 88.06 87.56 88.56 3.5973 0 0 0 0.40746 1 20220 20220 0.69038 0 1 5502 424;2801 3468 3472 7011 7011 0.0573995008314796 EKLAKTKGSQ 10 Unmodified _EKLAKTKGSQ_ 0 0 0 THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 545.3172607421875 2 545.316763 1088.61897 0.519 0.00028302 0.028644 1.562E-05 0.54764 0.00029864 545.316642574114 79.24 0.73659 82.882 82.415 83.151 3.6423 122 90 2 0 0 0 0.56189 1 18786 18786 2.4985 2.4985 1 202200 5503 32963 3469 3473 7012 7012 0.07820799534783873 EKLAKTKGSQ 10 Unmodified _EKLAKTKGSQ_ 0 0 0 THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.37371 0.00020379 0.32485 0.00017715 0.69855 0.00038093 545.3168392589663 82.767 0.325 82.767 82.73 83.055 0 -0.11905 1.3469E-05 NaN 2.4985 49 29 3 NaN NaN NaN NaN 0 NaN NaN 0 601950 5504 32963 3469 3473 0.07820799534783873 EKLAKTKGSQ 10 Unmodified _EKLAKTKGSQ_ 0 0 0 THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|57|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 545.316763 1088.61897 0.48049 0.00026202 0.28987 0.00015807 0.77036 0.00042009 545.3167818116281 79.308 0.71011 82.941 82.629 83.339 3.6331 0.05453 -2.4683E-05 NaN 2.4985 120 79 2 NaN NaN NaN NaN 0 NaN NaN 0 169660 5505 32963 3469 3473 0.07820799534783873 EKLDKFRKYK 10 Unmodified _EKLDKFRKYK_ 0 0 0 REV__L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|14|2|sense REV__L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|14|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 451.9324951171875 3 452.266233 1353.77687 0.17721 8.0144E-05 1.2012 0.00054328 1.3784 0.00062342 452.2665482595 92.332 0.08091 96.21 96.167 96.248 3.8782 13 11 2 0 0 0 0.84575 1 21896 21896 0.62683 0 1 110840 + 5506 27934 3470 3474 7013 7013 0.11413298793991089 EKLETLINV 9 Unmodified _EKLETLINV_ 0 0 0 REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.8081665039062 2 529.808239 1057.60193 0.46137 0.00024444 -0.50069 -0.00026527 -0.039325 -2.0835E-05 529.8076619585471 107.84 0.13918 111.51 111.44 111.58 3.6724 12 8 2 0 0 0 0.36392 1 26440 26440 10.074 2.1638 1 3190600 + 5507 29190 3471 3475 7014 7014 0.07542878928961727 EKLETLINV 9 Unmodified _EKLETLINV_ 0 0 0 REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 529.808239 1057.60193 0.46137 0.00024444 -0.50069 -0.00026527 -0.039325 -2.0835E-05 529.8076619585471 107.84 0.13918 111.51 111.44 111.58 3.6724 0.058678 0.00047813 NaN 10.074 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3190600 + 5508 29190 3471 3475 0.07542878928961727 EKLETLINV 9 Unmodified _EKLETLINV_ 0 0 0 REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 529.808239 1057.60193 0.41349 0.00021907 -0.65791 -0.00034857 -0.24442 -0.0001295 529.8076547411217 107.85 0.099411 111.39 111.32 111.42 3.5345 -0.065548 0.00031154 NaN 10.074 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3483000 + 5509 29190 3471 3475 0.07542878928961727 EKLETLINV 9 Unmodified _EKLETLINV_ 0 0 0 REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 529.808239 1057.60193 0.44063 0.00023345 -1.0549 -0.00055889 -0.61425 -0.00032544 529.8076046195877 107.84 0.088654 111.38 111.34 111.43 3.5382 -0.075763 -0.0001091 NaN 10.074 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3647300 + 5510 29190 3471 3475 0.07542878928961727 EKLETLINV 9 Unmodified _EKLETLINV_ 0 0 0 REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 529.808239 1057.60193 0.41818 0.00022156 -0.10114 -5.3583E-05 0.31704 0.00016797 529.807832996224 107.8 0.1117 111.48 111.42 111.54 3.6783 0.024873 0.00090151 NaN 10.074 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4657200 + 5511 29190 3471 3475 0.07542878928961727 EKLETLINV 9 Unmodified _EKLETLINV_ 0 0 0 REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense REV__L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|46|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 529.808239 1057.60193 0.48782 0.00025845 -1.2211 -0.00064694 -0.73327 -0.00038849 529.8074734680299 107.82 0.099083 111.5 111.44 111.54 3.6813 0.045727 -0.00028521 NaN 10.074 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 5410300 + 5512 29190 3471 3475 0.07542878928961727 EKLFKQQY 8 Unmodified _EKLFKQQY_ 0 0 0 REV__nc|ENSG00000143194|Q96JY0-2|MAEL REV__nc|ENSG00000143194|Q96JY0-2|MAEL MULTI-MSMS UPN48_class_I_Rep_1 5 542.295166015625 2 542.295299 1082.57605 0.38677 0.00020974 -0.20269 -0.00010992 0.18408 9.9825E-05 542.2950901378747 48.342 0.5125 51.866 51.624 52.136 3.5239 55 32 2 0 0 0 0.82752 1 9698 9698 9.3474 1.4373 1 150240 + 5513 19430 3472 3476 7015 7015 0.038060294773458736 EKLFVFVF 8 Unmodified _EKLFVFVF_ 0 0 0 REV__ENST00000246151.8_1_1:24114150-24114258:+|nuORF REV__ENST00000246151.8_1_1:24114150-24114258:+|nuORF MSMS UPN47_class_I_Rep_2 3 514.7959594726562 2 514.794404 1027.57425 NaN NaN NaN NaN NaN NaN NaN 16.197 1 19.583 19.083 20.083 3.3864 0 0 0 0.40738 1 994 994 0.79363 0.10326 1 + 5514 17196 3473 3477 7016 7016 0.061570204593635935 EKLHKDRLR 9 Unmodified _EKLHKDRLR_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 MSMS UPN48_class_I_Rep_3 7 597.8566284179688 2 597.856921 1193.69929 NaN NaN NaN NaN NaN NaN NaN 85.77 1 89.54 89.04 90.04 3.7701 0 0 0 0.38639 1 20349 20349 3.9444 0.66309 1 + 5515 17720 3474 3478 7017 7017 0.11018705648439209 EKLHLYKKGRR 11 Unmodified _EKLHLYKKGRR_ 0 0 0 ENST00000515003.1_1_5:98106807-98108385:-|nuORF ENST00000515003.1_1_5:98106807-98108385:-|nuORF ENST00000515003.1_1_5:98106807-98108385:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 476.624267578125 3 476.624643 1426.8521 0.21502 0.00010249 -1.2852 -0.00061254 -1.0701 -0.00051006 476.6239763176401 104.56 0.31168 108.28 108.21 108.52 3.7192 52 44 2 0 0 0 0.6724 1 24699 24699 1.2148 0 1 4280600 5516 7200 3475 3479 7018 7018 0.15574901045033585 EKLHSRHGK 9 Unmodified _EKLHSRHGK_ 0 0 0 REV__L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|15|3|sense REV__L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 546.2977294921875 2 546.307064 1090.59957 NaN NaN NaN NaN NaN NaN NaN 58.261 1 58.261 57.761 58.761 0 0 0 0 0.38784 1 12814 12814 3.5965 0.31518 1 + 5517 26792 3476 3480 7019 7019 0.05789888034496471 EKLKEKVDV 9 Unmodified _EKLKEKVDV_ 0 0 0 ENST00000572607.1_1_17:454958-465900:-|nuORF;ENSG00000141252.20,VPS53,chr17,-,I15.1,631629,632743|24|5.11|2|intron;ENSG00000141252.20,VPS53,chr17,-,I15.1,631629,632743|24|5.11|3|intron;ENSG00000141252.20,VPS53,chr17,-,I15.1,631629,632743|24|5.11|7|intron;ENSG00000141252.20,VPS53,chr17,-,I15.1,631629,632743|24|5.11|4|intron;ENSG00000141252.20,VPS53,chr17,-,I15.1,631629,632743|24|5.11|6|intron;ENSG00000141252.20,VPS53,chr17,-,I15.1,631629,632743|24|5.11|8|intron;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53 ENST00000572607.1_1_17:454958-465900:-|nuORF ENST00000572607.1_1_17:454958-465900:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 544.3216552734375 2 544.321514 1086.62847 -0.39744 -0.00021634 -0.30771 -0.00016749 -0.70515 -0.00038383 544.3214081054433 16.881 0.98203 20.243 19.847 20.829 3.3619 204 111 2 0 0 0 0.49187 1 1226 1226 1.4819 0 1 102120 5518 3209 3477 3481 7020 7020 0.08862567820256118 EKLKITNI 8 Unmodified _EKLKITNI_ 0 0 0 L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|8|1|sense L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|8|1|sense L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 479.8002624511719 2 479.800217 957.585882 -0.22461 -0.00010777 -0.13697 -6.572E-05 -0.36158 -0.00017349 479.7998981935153 15.204 0.60649 18.591 18.454 19.061 3.3864 109 70 3 0 0 0 0.72333 1 765 765 6.7232 0 1 125490 5519 12753 3478 3482 7021 7021 0.10539217482676122 EKLKITNI 8 Unmodified _EKLKITNI_ 0 0 0 L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|8|1|sense L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|8|1|sense L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|8|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 479.800217 957.585882 -0.37653 -0.00018066 0.22917 0.00010996 -0.14736 -7.0701E-05 479.80017693481227 15.088 0.37511 18.563 18.429 18.804 3.475 -0.038316 9.2678E-05 NaN 6.7232 91 44 3 NaN NaN NaN NaN 0 NaN NaN 0 140300 5520 12753 3478 3482 0.10539217482676122 EKLKLQAYK 9 Unmodified _EKLKLQAYK_ 0 0 0 chr4:103148999-103149118|148|16.22|0.92|4.14|-|1|CENPE,CENPE|2 chr4:103148999-103149118|148|16.22|0.92|4.14|-|1|CENPE,CENPE|2 chr4:103148999-103149118|148|16.22|0.92|4.14|-|1|CENPE,CENPE|2 MULTI-SECPEP UPN48_class_I_Rep_1 5 560.3421630859375 2 560.839874 1119.66519 0.44935 0.00025202 2.9233 0.0016395 3.3726 0.0018915 561.3427423270566 107.89 0.069305 111.52 111.5 111.57 3.6313 5 4 2 0 0 0 0.11884 1 26034 26034 9.3831 0 1 582540 5521 607 3479 3483 7022 7022 0.11014864436810967 EKLKLQQKH 9 Unmodified _EKLKLQQKH_ 0 0 0 ENSG00000154240|ENST00000535342|CEP112 ENSG00000154240|ENST00000535342|CEP112 ENSG00000154240|ENST00000535342|CEP112 MSMS UPN47_class_I_Rep_2 3 576.350341796875 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 107.56 1 111.09 110.59 111.59 3.5345 0 0 0 0.31276 1 26029 26029 10.074 0 1 5522 3667 3480 3484 7023 7023 0.11292785042633113 EKLKSLSSKN 10 Unmodified _EKLKSLSSKN_ 0 0 0 L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|42|2|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|42|2|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|42|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.3299560546875 2 567.32987 1132.64519 0.46358 0.00026301 -0.22441 -0.00012732 0.23917 0.00013569 567.3294828712527 85.664 0.27032 85.664 85.538 85.808 0 51 26 3 0 0 0 0.56374 1 20474 20474 1.1933 0.23107 1 244140 5523 8686 3481 3485 7024 7024 0.08417068706239661 EKLKVFAY 8 Unmodified _EKLKVFAY_ 0 0 0 REV__ENST00000563305.1_1_16:67472433-67472676:-|nuORF REV__ENST00000563305.1_1_16:67472433-67472676:-|nuORF MSMS UPN47_class_I_Rep_3 4 499.2886047363281 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 21.986 1 25.336 24.836 25.836 3.3496 0 0 0 0.40738 1 2555 2555 0.79363 0 1 + 5524 19870 3482 3486 7025 7025 0.06599832453980525 EKLLEKLARRT 11 Unmodified _EKLLEKLARRT_ 0 0 0 REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.9485778808594 3 452.948904 1355.82488 0.18689 8.465E-05 -0.65987 -0.00029889 -0.47298 -0.00021424 452.9485276053105 101.45 0.87892 105.25 105.13 106.01 3.7942 215 128 3 0 0 0 0.64611 2 25015 25015;25040 3.5927 3.5927 1 904430 + 5525 29543 3483 3487 7026;7027 7026 0.1612037271402187 EKLLEKLARRT 11 Unmodified _EKLLEKLARRT_ 0 0 0 REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 452.948904 1355.82488 0.061679 2.7938E-05 -0.24481 -0.00011089 -0.18313 -8.2949E-05 452.9489679570925 101.46 0.094223 104.97 104.91 105 3.5062 -0.13492 0.00073408 NaN 3.5927 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1131800 + 5526 29543 3483 3487 0.1612037271402187 EKLLEKLARRT 11 Unmodified _EKLLEKLARRT_ 0 0 0 REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 452.948904 1355.82488 0.015706 7.1142E-06 -1.0119 -0.00045834 -0.99619 -0.00045122 452.9483513876584 101.48 1.2453 105.09 104.59 105.83 3.612 -0.015238 -0.00030827 NaN 3.5927 404 175 4 NaN NaN NaN NaN 0 NaN NaN 0 4754100 + 5527 29543 3483 3487 0.1612037271402187 EKLLEKLARRT 11 Unmodified _EKLLEKLARRT_ 0 0 0 REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 452.948904 1355.82488 0.15891 7.1979E-05 -0.79558 -0.00036036 -0.63667 -0.00028838 452.94846161785927 101.29 1.2323 105.03 104.49 105.72 3.7416 -0.073119 -1.4333E-05 NaN 3.5927 471 183 4 NaN NaN NaN NaN 0 NaN NaN 0 4288400 + 5528 29543 3483 3487 0.1612037271402187 EKLLEKLARRT 11 Unmodified _EKLLEKLARRT_ 0 0 0 REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense REV__L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|149|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 452.948904 1355.82488 0.17089 7.7404E-05 -0.73379 -0.00033237 -0.5629 -0.00025497 452.9484889438514 101.37 1.2299 105.18 104.68 105.91 3.8153 0.081111 6.963E-05 NaN 3.5927 524 179 4 NaN NaN NaN NaN 0 NaN NaN 0 5091700 + 5529 29543 3483 3487 0.1612037271402187 EKLLEVAVLVE 11 Unmodified _EKLLEVAVLVE_ 0 0 0 REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 620.8705444335938 2 621.371204 1240.72785 0.54938 0.00034137 0.72212 0.0004487 1.2715 0.00079007 621.3709217148662 107.87 0.10625 111.52 111.47 111.57 3.655 7 5 2 0 0 0 22.551 1 26467 26467 2.7352 0 1 712530 + 5530 19568 3484 3488 7028 7028 0.11711965714357575 EKLLIDIIHF 10 Unmodified _EKLLIDIIHF_ 0 0 0 ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|5|intron;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|1|intron;ENST00000583043.5_1_18:67684852-67806940:-|nuORF;ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|4|intron ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|5|intron ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|5|intron MSMS UPN48_class_I_Rep_3 7 620.8709716796875 2 620.868631 1239.72271 NaN NaN NaN NaN NaN NaN NaN 107.98 1 111.66 111.16 112.16 3.6813 0 0 0 0.53105 1 25510 25510 6.7232 0.51738 1 5531 4753 3485 3489 7029 7029 0.11243706642426332 EKLLKKTEHR 10 Unmodified _EKLLKKTEHR_ 0 0 0 REV__L1MA4_dup9008|chr17:3022455-3023037:-|1.347375522514209|0.0318745906089375|5.4|151.0|18|3|sense REV__L1MA4_dup9008|chr17:3022455-3023037:-|1.347375522514209|0.0318745906089375|5.4|151.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.3856201171875 2 641.385511 1280.75647 0.43584 0.00027954 -0.73681 -0.00047258 -0.30097 -0.00019304 641.3850991498442 94.283 0.44343 97.904 97.724 98.167 3.6208 104 53 3 0 0 0 0.56333 1 22689 22689 1.4819 0 1 141690 + 5532 25224 3486 3490 7030 7030 0.1273212813414375 EKLLLQSHSN 10 Unmodified _EKLLLQSHSN_ 0 0 0 REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|146|3|sense REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|146|3|sense MSMS UPN46_class_I_Rep_3 1 584.8221435546875 2 584.81967 1167.62479 NaN NaN NaN NaN NaN NaN NaN 79.459 1 79.459 78.959 79.959 0 0 0 0 0.53105 1 18667 18667 1.1933 0.59184 1 + 5533 30083 3487 3491 7031 7031 0.04767898046452501 EKLLLWVAKW 10 Unmodified _EKLLLWVAKW_ 0 0 0 REV__L1PA15_dup1462|chr3:111646447-111647244:+|3.1838610124828315|0.1474004480999574|4.43|151.0|13|2|sense REV__L1PA15_dup1462|chr3:111646447-111647244:+|3.1838610124828315|0.1474004480999574|4.43|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 643.3861083984375 2 643.386991 1284.75943 NaN NaN NaN NaN NaN NaN NaN 107.21 1 110.89 110.39 111.39 3.6783 0 0 0 0.53105 1 25329 25329 8.7454 3.0136 1 + 5534 29186 3488 3492 7032 7032 0.1284400325896513 EKLLQRLHFL 10 Unmodified _EKLLQRLHFL_ 0 0 0 REV__nc|ENSG00000170581|P52630-4|STAT2 REV__nc|ENSG00000170581|P52630-4|STAT2 MSMS UPN46_class_I_Rep_3 1 649.2625732421875 2 648.892972 1295.77139 NaN NaN NaN NaN NaN NaN NaN 104.11 1 104.11 103.61 104.61 0 0 0 0 0.53105 1 25419 25419 5.7319 0 1 + 5535 20371 3489 3493 7033 7033 0.13533620002158386 EKLLQRLHFL 10 Unmodified _EKLLQRLHFL_ 0 0 0 REV__nc|ENSG00000170581|P52630-4|STAT2 REV__nc|ENSG00000170581|P52630-4|STAT2 MSMS UPN48_class_I_Rep_3 7 648.8951416015625 2 648.892972 1295.77139 NaN NaN NaN NaN NaN NaN NaN 100.38 1 104.23 103.73 104.73 3.8537 0 0 0 0.53105 1 23765 23765 2.9952 0 1 + 5536 20371 3489 3493 7034 7034 0.13533620002158386 EKLPVRPH 8 Unmodified _EKLPVRPH_ 0 0 0 REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229 REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229 MULTI-MSMS UPN47_class_I_Rep_3 4 488.2914733886719 2 488.290351 974.566149 0.23535 0.00011492 0.37053 0.00018093 0.60588 0.00029584 488.2904587787822 107.81 0.20436 111.35 111.28 111.48 3.5382 59 23 4 0 0 0 0.82752 2 26315 26315;26319 7.9102 0.62092 1 53633000 + 5537 21443 3490 3494 7035;7036 7035 0.0778488626260696 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3426513671875 2 589.343646 1176.67274 0.54394 0.00032057 -0.95317 -0.00056174 -0.40923 -0.00024118 589.3429576358793 86.703 0.28903 86.703 86.494 86.783 0 50 31 2 0 0 0 0.47197 1 20706 20706 3.5965 0 1 743590 + 5538 26718 3491 3495 7037 7037 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3433227539062 2 589.343646 1176.67274 0.54469 0.00032101 -0.85496 -0.00050386 -0.31027 -0.00018285 589.3430597155996 88.136 0.18222 88.136 88.038 88.22 0 35 14 3 0 0 0 0.47197 1 21154 21154 3.5965 0 1 632420 + 5539 26718 3491 3495 7038 7038 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3438720703125 2 589.343646 1176.67274 0.5448 0.00032108 -0.6082 -0.00035844 -0.063399 -3.7364E-05 589.343172803732 100.67 0.083557 100.67 100.62 100.71 0 12 6 3 0 0 0 0.47197 1 24547 24547 3.5965 0 1 290250 + 5540 26718 3491 3495 7039 7039 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MSMS UPN47_class_I_Rep_1 2 589.3424682617188 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 97.068 1 100.85 100.35 101.35 3.7767 0 0 0 0.39598 1 24058 24058 1.6526 0 1 + 5541 26718 3491 3495 7040 7040 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.3434448242188 2 589.343646 1176.67274 0.48522 0.00028596 -0.62669 -0.00036934 -0.14147 -8.3374E-05 589.3430572768855 85.269 0.19194 88.641 88.496 88.688 3.3716 41 29 2 0 0 0 0.47197 1 21357 21357 3.5965 0 1 717520 + 5542 26718 3491 3495 7041 7041 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.343646 1176.67274 0.54469 0.00032101 -0.85496 -0.00050386 -0.31027 -0.00018285 589.3430597155996 88.136 0.18222 88.136 88.038 88.22 0 -0.026197 -1.806E-06 NaN 3.5965 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 632420 + 5543 26718 3491 3495 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 589.343646 1176.67274 0.54537 0.00032141 -0.84884 -0.00050026 -0.30347 -0.00017885 589.3429904179911 84.765 0.2001 88.188 88.031 88.231 3.4232 0.026197 5.4087E-06 NaN 3.5965 45 29 2 NaN NaN NaN NaN 0 NaN NaN 0 204580 + 5544 26718 3491 3495 0.09147016757128767 EKLQRRYGK 9 Unmodified _EKLQRRYGK_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|64|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 589.343646 1176.67274 0.50946 0.00030025 -1.0115 -0.00059613 -0.50206 -0.00029589 589.3429076825042 96.712 0.64283 100.62 100.37 101.02 3.9084 -0.022994 -2.9995E-05 NaN 3.5965 145 84 2 NaN NaN NaN NaN 0 NaN NaN 0 289020 + 5545 26718 3491 3495 0.09147016757128767 EKLRKVCKVH 10 Unmodified _EKLRKVCKVH_ 0 0 0 ENST00000506396.1_1_5:31249548-31249821:+|nuORF ENST00000506396.1_1_5:31249548-31249821:+|nuORF ENST00000506396.1_1_5:31249548-31249821:+|nuORF MSMS UPN48_class_I_Rep_3 7 620.3714599609375 2 620.371349 1238.72815 NaN NaN NaN NaN NaN NaN NaN 85.1 1 88.849 88.349 89.349 3.7494 0 0 0 0.53105 1 20182 20182 1.3295 0 1 5546 7158 3492 3496 7042 7042 0.11833106953235983 EKLRWWRKKV 10 Unmodified _EKLRWWRKKV_ 0 0 0 REV__ENST00000274376.10_1_5:86563790-86563910:+|nuORF REV__ENST00000274376.10_1_5:86563790-86563910:+|nuORF MSMS UPN48_class_I_Rep_3 7 476.9587097167969 3 476.957734 1427.85137 NaN NaN NaN NaN NaN NaN NaN 104.89 1 108.61 108.11 109.11 3.7192 0 0 0 0.53105 1 24761 24761 0.62683 0.17231 1 + 5547 21613 3493 3497 7043 7043 0.15456106395981806 EKLTKVAVT 9 Unmodified _EKLTKVAVT_ 0 0 0 REV__nc|ENSG00000143322|P42684-5|ABL2 REV__nc|ENSG00000143322|P42684-5|ABL2 MSMS UPN47_class_I_Rep_1 2 494.8054504394531 2 494.8055 987.596446 NaN NaN NaN NaN NaN NaN NaN 75.234 1 78.637 78.137 79.137 3.4034 0 0 0 0.38639 1 18560 18560 3.9444 0 1 + 5548 19437 3494 3498 7044 7044 0.10215200137145075 EKLWGKLIPQ 10 Unmodified _EKLWGKLIPQ_ 0 0 0 REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|16|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3610229492188 2 606.360973 1210.70739 0.60693 0.00036802 0.62368 0.00037818 1.2306 0.0007462 606.3606891550822 109.69 0.56599 109.69 109.56 110.13 0 113 46 3 0 0 0 0.54822 1 26951 26951 5.7319 1.4026 1 4091400 + 5549 27288 3495 3499 7045 7045 0.11046839845243994 EKLYSHADH 9 Unmodified _EKLYSHADH_ 0 0 0 LTR26D_dup25|chr3:128779861-128780373:-|1.5266388473183523|0.0170383705753272|6.49|151.0|30|3|anti-sense LTR26D_dup25|chr3:128779861-128780373:-|1.5266388473183523|0.0170383705753272|6.49|151.0|30|3|anti-sense LTR26D_dup25|chr3:128779861-128780373:-|1.5266388473183523|0.0170383705753272|6.49|151.0|30|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 550.87939453125 2 550.261988 1098.50942 0.62023 0.00034129 0.10366 5.704E-05 0.72389 0.00039833 550.2619171405406 108.11 0.1645 111.65 111.59 111.75 3.5333 24 18 2 0 0 0 0.12281 1 26214 26214 1.8442 0 1 1279500 5550 15607 3496 3500 7046 7046 -0.035892060845753804 EKMYKPVK 8 Unmodified _EKMYKPVK_ 0 0 0 REV__L1M4_dup8701|chr8:47747913-47749131:+|1.3659483838665938|0.014168593214465|6.59|151.0|31|3|sense REV__L1M4_dup8701|chr8:47747913-47749131:+|1.3659483838665938|0.014168593214465|6.59|151.0|31|3|sense MSMS UPN46_class_I_Rep_3 1 511.7884521484375 2 511.788795 1021.56304 NaN NaN NaN NaN NaN NaN NaN 20.828 1 20.828 20.328 21.328 0 0 0 0 0.40746 1 2232 2232 0.69038 0 1 + 5551 24459 3497 3501 7047 7047 0.0531187509358233 EKNATIIYA 9 Unmodified _EKNATIIYA_ 0 0 0 nc|ENSG00000165240|Q04656-6|ATP7A nc|ENSG00000165240|Q04656-6|ATP7A nc|ENSG00000165240|Q04656-6|ATP7A MULTI-MSMS UPN48_class_I_Rep_2 6 511.7796936035156 2 511.779482 1021.54441 0.31897 0.00016324 -0.48504 -0.00024823 -0.16607 -8.4992E-05 511.7792136846743 32.695 0.45759 36.345 36.08 36.538 3.6497 83 55 2 0 0 0 0.48846 1 5125 5125 1.8442 0.19162 1 69142 5552 16738 3498 3502 7048 7048 0.034500367233818 EKNGVYLLS 9 Unmodified _EKNGVYLLS_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MSMS UPN48_class_I_Rep_3 7 511.779541015625 2 511.779482 1021.54441 NaN NaN NaN NaN NaN NaN NaN 32.324 1 36.014 35.514 36.514 3.6896 0 0 0 0.39598 1 4897 4897 1.6526 0.85899 1 5553 2943 3499 3503 7049 7049 0.034500367233818 EKNILLVHIPG 11 Unmodified _EKNILLVHIPG_ 0 0 0 REV__nc|ENSG00000133740|Q15329-2|E2F5 REV__nc|ENSG00000133740|Q15329-2|E2F5 MSMS UPN46_class_I_Rep_3 1 616.8721313476562 2 616.871705 1231.72886 NaN NaN NaN NaN NaN NaN NaN 80.179 1 80.179 79.679 80.679 0 0 0 0 0.38417 1 18875 18875 2.9952 0.49676 1 + 5554 19067 3500 3504 7050 7050 0.1222622487391618 EKNPVAPAPDP 11 Unmodified _EKNPVAPAPDP_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS UPN47_class_I_Rep_3 4 567.7949829101562 2 567.793121 1133.57169 NaN NaN NaN NaN NaN NaN NaN 65.794 1 68.979 68.479 69.479 3.1853 0 0 0 0.38417 1 15825 15825 2.4985 0.19575 1 5555 2340 3501 3505 7051 7051 0.010245202637634065 EKNWYLFFF 9 Unmodified _EKNWYLFFF_ 0 0 0 L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|257|1|anti-sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|257|1|anti-sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|257|1|anti-sense MSMS UPN48_class_I_Rep_2 6 647.3182983398438 2 647.318774 1292.623 NaN NaN NaN NaN NaN NaN NaN 42.449 1 46.206 45.706 46.706 3.7579 0 0 0 0.40038 1 7860 7860 0.6015 0 1 5556 9880 3502 3506 7052 7052 -0.011611109715431667 EKPPDQHLQ 9 Unmodified _EKPPDQHLQ_ 0 0 0 REV__L1PA17_dup3280|chr11:9982570-9985317:+|1.116777237513688|0.1778266036859437|2.65|151.0|66|3|sense REV__L1PA17_dup3280|chr11:9982570-9985317:+|1.116777237513688|0.1778266036859437|2.65|151.0|66|3|sense MSMS UPN48_class_I_Rep_1 5 546.2786254882812 2 546.277638 1090.54072 NaN NaN NaN NaN NaN NaN NaN 40.787 1 44.293 43.793 44.793 3.506 0 0 0 0.39598 1 7357 7357 1.6526 0.32309 1 + 5557 29466 3503 3507 7053 7053 -0.0009263305048534676 EKQFDRIF 8 Unmodified _EKQFDRIF_ 0 0 0 REV__MER11C_dup292|chr5:137976544-137977622:+|4.803058726890387|0.0769181486033844|5.96|151.0|51|2|anti-sense REV__MER11C_dup292|chr5:137976544-137977622:+|4.803058726890387|0.0769181486033844|5.96|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.78564453125 2 541.785099 1081.55564 0.42014 0.00022763 0.0047679 2.5832E-06 0.42491 0.00023021 541.7849555084539 53.384 0.83575 56.904 56.527 57.362 3.5192 134 60 3 0 0 0 0.82752 1 11295 11295 10.824 1.4408 1 470360 + 5558 31099 3504 3508 7054 7054 0.018128588175159166 EKQLTFVHY 9 Unmodified _EKQLTFVHY_ 0 0 0 L1MCa_dup2635|chr6:34310532-34312096:+|2.775605354988381|0.0821619531459702|5.08|151.0|68|1|anti-sense L1MCa_dup2635|chr6:34310532-34312096:+|2.775605354988381|0.0821619531459702|5.08|151.0|68|1|anti-sense L1MCa_dup2635|chr6:34310532-34312096:+|2.775605354988381|0.0821619531459702|5.08|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_1 5 582.8060913085938 2 582.806031 1163.59751 NaN NaN NaN NaN NaN NaN NaN 22.001 1 25.554 25.054 26.054 3.5533 0 0 0 0.40038 1 2088 2088 0.6015 0 1 5559 11787 3505 3509 7055 7055 0.02225414506051493 EKQPVPFL 8 Unmodified _EKQPVPFL_ 0 0 0 REV__MER21C_dup23|chr1:1848882-1849292:+|1.8125966777374105|0.0126632290354409|7.16|151.0|12|3|sense REV__MER21C_dup23|chr1:1848882-1849292:+|1.8125966777374105|0.0126632290354409|7.16|151.0|12|3|sense MSMS UPN48_class_I_Rep_1 5 479.2723083496094 2 479.273835 956.533118 NaN NaN NaN NaN NaN NaN NaN 38.191 1 41.696 41.196 42.196 3.5052 0 0 0 0.40738 1 6584 6584 0.79363 0 1 + 5560 31223 3506 3510 7056 7056 0.05311259419897851 EKQQVSQTI 9 Unmodified _EKQQVSQTI_ 0 0 0 REV__L1MDa_dup1696|chr4:98438916-98439835:-|1.3636188535306308|0.2594191567885682|2.39|151.0|4|1|sense REV__L1MDa_dup1696|chr4:98438916-98439835:-|1.3636188535306308|0.2594191567885682|2.39|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.7852783203125 2 530.785296 1059.55604 0.22909 0.0001216 0.037088 1.9686E-05 0.26618 0.00014128 530.7855983141936 46.218 0.56992 49.462 49.196 49.766 3.2441 52 35 2 0 0 0 0.44742 1 9922 9922 5.2969 0 1 87511 + 5561 27507 3507 3511 7057 7057 0.028642337467317702 EKREKVKQRER 11 Unmodified _EKREKVKQRER_ 0 0 0 REV__HERV9N-int_dup170|chr12:29169953-29171035:-|3.1086337561351067|0.2381617579793208|3.71|151.0|15|2|sense REV__HERV9N-int_dup170|chr12:29169953-29171035:-|3.1086337561351067|0.2381617579793208|3.71|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 495.9588928222656 3 495.958462 1484.85356 NaN NaN NaN NaN NaN NaN NaN 95.486 1 99.103 98.603 99.603 3.6167 0 0 0 0.38417 1 22999 22999 0.50596 0.051438 1 + 5562 23617 3508 3512 7058 7058 0.13052490343147838 EKRELASY 8 Unmodified _EKRELASY_ 0 0 0 REV__L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|20|1|sense REV__L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|20|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.7625427246094 2 498.261456 994.50836 0.27755 0.00013829 -0.14499 -7.2243E-05 0.13256 6.6048E-05 498.26123455192845 45.522 0.43148 45.522 45.214 45.646 0 50 39 2 0 0 0 0.82752 1 9256 9256 25.399 0 1 203550 + 5563 21083 3509 3513 7059 7059 0.010885795465128467 EKREMGIW 8 Unmodified _EKREMGIW_ 0 0 0 L1MB7_dup4969|chr3:171640536-171641406:-|1.0878638329208514|0.011445522627938|6.57|149.0|46|1|anti-sense L1MB7_dup4969|chr3:171640536-171641406:-|1.0878638329208514|0.011445522627938|6.57|149.0|46|1|anti-sense L1MB7_dup4969|chr3:171640536-171641406:-|1.0878638329208514|0.011445522627938|6.57|149.0|46|1|anti-sense MSMS UPN46_class_I_Rep_3 1 524.7528076171875 2 524.765852 1047.51715 NaN NaN NaN NaN NaN NaN NaN 116.8 1 116.8 116.3 117.3 0 0 0 0 0.40738 1 28927 28927 0.79363 0 1 5564 10841 3510 3514 7060 7060 -0.004707700886456223 EKREVILY 8 Unmodified _EKREVILY_ 0 0 0 nc|ENSG00000146856|Q8NEM8-2|AGBL3;ENSG00000146856|ENST00000436302|AGBL3;nc|ENSG00000146856|Q8NEM8|AGBL3 nc|ENSG00000146856|Q8NEM8-2|AGBL3 nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS UPN47_class_I_Rep_3 4 525.304443359375 2 525.303124 1048.5917 0.24404 0.00012819 0.72289 0.00037974 0.96693 0.00050793 525.3034486297499 58.265 0.33904 61.431 61.33 61.669 3.1658 32 20 2 0 0 0 0.82752 1 13527 13527 13.906 1.3745 1 126370 5565 3450 3511 3515 7061 7061 0.06934315994385543 EKRIIRVG 8 Unmodified _EKRIIRVG_ 0 0 0 L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8117370605469 2 485.811451 969.608348 0.16752 8.1385E-05 0.13567 6.591E-05 0.30319 0.0001473 485.8115392026923 60.11 0.34575 63.509 63.444 63.79 3.3982 37 30 2 0 0 0 0.82752 1 14055 14055 8.5933 1.304 1 1040700 5566 14198 3512 3516 7062 7062 0.12232861671009232 EKRIIRVG 8 Unmodified _EKRIIRVG_ 0 0 0 L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81219482421875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 60.419 1 63.817 63.317 64.317 3.3982 0 0 0 0.39819 1 14100 14100 8.5933 1.304 1 5567 14198 3512 3516 7063 7063 0.12232861671009232 EKRIIRVG 8 Unmodified _EKRIIRVG_ 0 0 0 L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 60.877 1 64.042 63.542 64.542 3.1651 0 0 0 0.39819 1 14324 14324 8.5933 0.68312 1 5568 14198 3512 3516 7064 7064 0.12232861671009232 EKRIIRVG 8 Unmodified _EKRIIRVG_ 0 0 0 L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|231|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 485.811451 969.608348 0.072386 3.5166E-05 -0.89486 -0.00043473 -0.82248 -0.00039957 485.811187853779 60.511 0.25025 63.676 63.537 63.787 3.1651 0.083431 -0.00094598 NaN 8.5933 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 315830 5569 14198 3512 3516 0.12232861671009232 EKRKRMKQNKI 11 Unmodified _EKRKRMKQNKI_ 0 0 0 L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 486.958984375 3 486.961038 1457.86129 NaN NaN NaN NaN NaN NaN NaN 94.894 1 98.511 98.011 99.011 3.6167 0 0 0 0.38417 1 22843 22843 0.50596 0.051438 1 5570 13255 3513 3517 7065 7065 0.15066926339113706 EKRKRMKQNKI 11 Unmodified _EKRKRMKQNKI_ 0 0 0 L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 486.95904541015625 3 486.961038 1457.86129 NaN NaN NaN NaN NaN NaN NaN 95.146 1 98.763 98.263 99.263 3.6167 0 0 0 0.38417 1 22908 22908 0.50596 0.051438 1 5571 13255 3513 3517 7066 7066 0.15066926339113706 EKRKRMKQNKI 11 Unmodified _EKRKRMKQNKI_ 0 0 0 L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 486.95880126953125 3 486.961038 1457.86129 NaN NaN NaN NaN NaN NaN NaN 95.329 1 98.946 98.446 99.446 3.6167 0 0 0 0.38417 1 22955 22955 0.50596 0.34663 1 5572 13255 3513 3517 7067 7067 0.15066926339113706 EKRPANHST 9 Unmodified _EKRPANHST_ 0 0 0 L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|32|2|sense L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|32|2|sense L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|32|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 520.31103515625 2 520.267604 1038.52066 0.28418 0.00014785 -1.1515 -0.00059909 -0.86732 -0.00045124 520.2671489220445 45.03 0.68284 48.792 48.445 49.128 3.7617 78 51 2 0 0 0 0.091029 1 8613 8613 21.747 21.747 1 322460 5573 10032 3514 3518 7068 7068 0.002936160095487139 EKRQRRMR 8 Unmodified _EKRQRRMR_ 0 0 0 REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|17|1|sense REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|17|1|sense MSMS UPN47_class_I_Rep_2 3 580.333984375 2 580.33309 1158.65163 NaN NaN NaN NaN NaN NaN NaN 37.355 1 40.754 40.254 41.254 3.3988 0 0 0 0.40746 1 7114 7114 0.69038 0 1 + 5574 24520 3515 3519 7069 7069 0.07864728176627978 EKRRERYRKPI 11 Unmodified _EKRRERYRKPI_ 0 0 0 L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|172|3|sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|172|3|sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|172|3|sense MSMS UPN47_class_I_Rep_3 4 510.9686584472656 3 510.970702 1529.89028 NaN NaN NaN NaN NaN NaN NaN 97.124 1 100.54 100.04 101.04 3.414 0 0 0 0.38417 1 24080 24080 0.40827 0.31342 1 5575 9878 3516 3520 7070 7070 0.14652786959732111 EKTLAPLH 8 Unmodified _EKTLAPLH_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS UPN47_class_I_Rep_3 4 454.7634582519531 2 454.763635 907.512717 -0.40409 -0.00018376 0.37446 0.00017029 -0.029629 -1.3474E-05 454.7636972901015 45.085 1.1672 48.329 48.05 49.217 3.2441 112 75 2 0 0 0 0.82752 1 9647 9647 4.756 0 1 143870 + 5576 19910 3517 3521 7071 7071 0.055260887600866226 EKTNKNRKNYK 11 Unmodified _EKTNKNRKNYK_ 0 0 0 Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|40|1|anti-sense Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|40|1|anti-sense Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 474.9510498046875 3 474.931913 1421.77391 0.09599 4.5589E-05 -0.0053756 -2.553E-06 0.090614 4.3035E-05 474.93217000716754 103.02 0.034851 106.64 106.62 106.65 3.6164 6 4 2 0 0 0 0.67462 1 24835 24835 1.0136 0 1 46711 5577 32824 3518 3522 7072 7072 0.0798942366918709 EKTSHPLV 8 Unmodified _EKTSHPLV_ 0 0 0 REV__ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron REV__ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MSMS UPN47_class_I_Rep_3 4 455.75250244140625 2 455.753267 909.491981 NaN NaN NaN NaN NaN NaN NaN 119.9 1 123.31 122.81 123.81 3.4157 0 0 0 0.40738 1 29627 29627 0.79363 0 1 + 5578 21435 3519 3523 7073 7073 0.03361498380411376 EKVTNLITI 9 Unmodified _EKVTNLITI_ 0 0 0 L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|28|3|sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|28|3|sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.81103515625 2 515.810782 1029.60701 0.37732 0.00019463 0.20614 0.00010633 0.58347 0.00030096 515.8107954797002 63.589 0.97174 67.047 66.613 67.584 3.4578 168 76 3 0 0 0 0.006828 1 14340 14340 72.968 5.1298 1 1788800 5579 11927 3520 3524 7074 7074 0.09339182791586609 EKVTNLITI 9 Unmodified _EKVTNLITI_ 0 0 0 L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|28|3|sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|28|3|sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.81103515625 2 515.810782 1029.60701 0.36103 0.00018622 0.18398 9.49E-05 0.54501 0.00028112 515.810801709943 63.235 1.0507 66.744 66.409 67.459 3.5091 194 82 3 0 0 0 0.0053074 1 14174 14174 79.596 5.3967 1 2228500 5580 11927 3520 3524 7075 7075 0.09339182791586609 EKWDTSALI 9 Unmodified _EKWDTSALI_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|50|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|50|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.7771606445312 2 531.776939 1061.53933 0.36546 0.00019434 -0.918 -0.00048817 -0.55253 -0.00029383 531.7767996694251 76.132 0.82034 79.535 79.182 80.002 3.4034 181 76 4 0 0 0 0.074367 1 18810 18810 39.957 0 1 477530 5581 13501 3521 3525 7076 7076 0.011017328607522359 EKWKIRRY 8 Unmodified _EKWKIRRY_ 0 0 0 REV__L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|9|1|sense REV__L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 589.843994140625 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 82.68 1 86.017 85.517 86.517 3.337 0 0 0 0.40753 1 20722 20722 0.6015 0.076735 1 + 5582 27536 3522 3526 7077 7077 0.09028222108099726 EKWYRLKR 8 Unmodified _EKWYRLKR_ 0 0 0 REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF MSMS UPN46_class_I_Rep_3 1 589.8447265625 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 100.83 1 100.83 100.33 101.33 0 0 0 0 0.40746 1 24591 24591 0.69038 0.088878 1 + 5583 23193 3523 3527 7078 7078 0.09028222108076989 EKYEQQEF 8 Unmodified _EKYEQQEF_ 0 0 0 REV__ENSG00000143126|ENST00000271332|CELSR2 REV__ENSG00000143126|ENST00000271332|CELSR2 MSMS UPN48_class_I_Rep_1 5 550.749267578125 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 42.391 1 45.899 45.399 46.399 3.5079 0 0 0 0.40659 1 7835 7835 1.8442 0 1 + 5584 19424 3524 3528 7079 7079 -0.06355734415615188 EKYGTWNNW 9 Unmodified _EKYGTWNNW_ 0 0 0 REV__L1MB3_dup13096|chr14:71422335-71426478:-|2.3781066562084856|0.0434148222190023|5.78|151.0|102|3|sense REV__L1MB3_dup13096|chr14:71422335-71426478:-|2.3781066562084856|0.0434148222190023|5.78|151.0|102|3|sense MSMS UPN47_class_I_Rep_3 4 599.2681274414062 2 599.269813 1196.52507 NaN NaN NaN NaN NaN NaN NaN 35.978 1 39.233 38.733 39.733 3.2547 0 0 0 0.3967 1 6729 6729 1.4819 0 1 + 5585 25817 3525 3529 7080 7080 -0.06532919567553108 EKYLDERY 8 Unmodified _EKYLDERY_ 0 0 0 REV__ENST00000267522.7_1_14:64065530-64065620:-|nuORF REV__ENST00000267522.7_1_14:64065530-64065620:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 558.7724609375 2 558.272021 1114.52949 0.31302 0.00017475 -1.0473 -0.00058469 -0.7343 -0.00040994 558.7725602597011 47.335 0.06369 50.685 50.647 50.711 3.3502 5 3 2 0 0 0 0.82752 1 10157 10157 3.9444 0.66309 1 32869 + 5586 21600 3526 3530 7081 7081 -0.023194551446067635 EKYLDERY 8 Unmodified _EKYLDERY_ 0 0 0 REV__ENST00000267522.7_1_14:64065530-64065620:-|nuORF REV__ENST00000267522.7_1_14:64065530-64065620:-|nuORF MSMS UPN47_class_I_Rep_3 4 558.27001953125 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 48.373 1 51.614 51.114 52.114 3.2405 0 0 0 0.40292 1 10511 10511 6.7232 0.99131 1 + 5587 21600 3526 3530 7082 7082 -0.023194551446067635 EKYRQHFK 8 Unmodified _EKYRQHFK_ 0 0 0 REV__L1PA5_dup5778|chr8:90023720-90027759:-|1.9237790846135288|0.2596789000339231|2.89|151.0|16|1|sense REV__L1PA5_dup5778|chr8:90023720-90027759:-|1.9237790846135288|0.2596789000339231|2.89|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 568.3030395507812 2 568.30399 1134.59343 0.14668 8.3361E-05 -1.3279 -0.00075468 -1.1813 -0.00067132 568.303078525812 43.704 0.41081 47.062 46.833 47.243 3.358 29 23 2 0 0 0 0.82752 1 9093 9093 0.69038 0 1 56044 + 5588 29729 3527 3531 7083 7083 0.031513698029812076 ELAAIVTGDGY 11 Unmodified _ELAAIVTGDGY_ 0 0 0 Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.7792358398438 2 554.779679 1107.5448 0.36939 0.00020493 -0.47363 -0.00026276 -0.10424 -5.7833E-05 554.7794314060749 66.416 0.40535 69.774 69.52 69.926 3.3576 43 26 2 0 0 0 0.33678 2 15878 15859;15878 12.241 4.9514 1 79817 5589 33296 3528 3532 7084;7085 7085 -0.004665883473990107 ELAAIVTGDGY 11 Unmodified _ELAAIVTGDGY_ 0 0 0 Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 554.7797241210938 2 554.779679 1107.5448 NaN NaN NaN NaN NaN NaN NaN 66.67 1 69.929 69.429 70.429 3.2588 0 0 0 0.36307 1 16031 16031 8.1555 2.3951 1 5590 33296 3528 3532 7086 7086 -0.004665883473990107 ELAAIVTGDGY 11 Unmodified _ELAAIVTGDGY_ 0 0 0 Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 554.778076171875 2 554.779679 1107.5448 NaN NaN NaN NaN NaN NaN NaN 66.735 1 69.993 69.493 70.493 3.2588 0 0 0 0.37149 1 16050 16050 7.609 0.31972 1 5591 33296 3528 3532 7087 7087 -0.004665883473990107 ELAAIVTGDGY 11 Unmodified _ELAAIVTGDGY_ 0 0 0 Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.778076171875 2 554.779679 1107.5448 0.43549 0.0002416 -0.5694 -0.00031589 -0.13391 -7.429E-05 554.7794625393686 66.553 0.43888 69.738 69.643 70.082 3.1853 50 33 2 0 0 0 0.33678 4 16115 16049;16102;16115;16136 12.241 8.2963 1 94769 5592 33296 3528 3532 7088;7089;7090;7091 7090 -0.004665883473990107 ELAAQLESK 9 Unmodified _ELAAQLESK_ 0 0 0 REV__ENSG00000109061|ENST00000226207|MYH1 REV__ENSG00000109061|ENST00000226207|MYH1 MSMS UPN48_class_I_Rep_3 7 494.7696838378906 2 494.769114 987.523675 NaN NaN NaN NaN NaN NaN NaN 41.094 1 44.74 44.24 45.24 3.6458 0 0 0 0.3824 1 7385 7385 4.897 0 1 + 5593 18400 3529 3533 7092 7092 0.029414463437205995 ELALAQVKA 9 Unmodified _ELALAQVKA_ 0 0 0 ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN47_class_I_Rep_1 2 471.7953796386719 2 471.784567 941.554582 NaN NaN NaN NaN NaN NaN NaN 55.881 1 59.359 58.859 59.859 3.4785 0 0 0 0.38784 1 12719 12719 3.5965 0 1 5594 4419 3530 3534 7093 7093 0.0814664444861819 ELALRQCR 8 Unmodified _ELALRQCR_ 0 0 0 REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF MSMS UPN48_class_I_Rep_2 6 494.76959228515625 2 494.771468 987.528384 NaN NaN NaN NaN NaN NaN NaN 41.143 1 44.894 44.394 45.394 3.7508 0 0 0 0.39819 1 7485 7485 8.5933 0 1 + 5595 17934 3531 3535 7094 7094 0.03412052005478472 ELALRQCR 8 Unmodified _ELALRQCR_ 0 0 0 REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF REV__ENST00000492803.1_1_13:73372062-73409389:+|nuORF MSMS UPN48_class_I_Rep_3 7 494.7710876464844 2 494.771468 987.528384 NaN NaN NaN NaN NaN NaN NaN 41.293 1 44.939 44.439 45.439 3.6458 0 0 0 0.38547 1 7444 7444 13.508 0 1 + 5596 17934 3531 3535 7095 7095 0.03412052005478472 ELANHLFYL 9 Unmodified _ELANHLFYL_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS UPN47_class_I_Rep_1 2 560.2951049804688 2 560.295299 1118.57605 0.35143 0.0001969 0.16667 9.3386E-05 0.5181 0.00029029 560.2949654682027 66.743 1.0697 70.101 69.596 70.666 3.3584 174 79 3 0 0 0 0.16559 3 15941 15941;15983;15997 24.021 2.2739 1 364070 5597 2856 3532 3536 7096;7097;7098 7096 0.02150029477343196 ELANHLFYL 9 Unmodified _ELANHLFYL_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS UPN47_class_I_Rep_2 3 560.2949829101562 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.23293 1 16091 16091 18.146 2.2992 1 271980 5598 2856 3532 3536 7099 7099 0.02150029477343196 ELANHLFYL 9 Unmodified _ELANHLFYL_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS UPN47_class_I_Rep_3 4 560.29541015625 2 560.295299 1118.57605 0.43738 0.00024506 0.075112 4.2085E-05 0.51249 0.00028714 560.2949708556147 66.961 1.0669 70.152 69.825 70.892 3.1914 182 78 3 0 0 0 0.16559 2 16175 16175;16217 24.021 2.2739 1 302470 5599 2856 3532 3536 7100;7101 7100 0.02150029477343196 ELANNIRQ 8 Unmodified _ELANNIRQ_ 0 0 0 HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|191|2|anti-sense HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|191|2|anti-sense HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|191|2|anti-sense MSMS UPN47_class_I_Rep_3 4 478.7691345214844 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 33.223 1 36.51 36.01 37.01 3.2867 0 0 0 0.40625 1 5895 5895 2.3027 0 1 5600 8285 3533 3537 7102 7102 0.023951151236133228 ELAPILMTLF 10 Unmodified _ELAPILMTLF_ 0 0 0 L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|82|3|sense L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|82|3|sense L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|82|3|sense MSMS UPN47_class_I_Rep_1 2 574.3272094726562 2 574.325211 1146.63587 NaN NaN NaN NaN NaN NaN NaN 66.043 1 69.401 68.901 69.901 3.3576 0 0 0 0.53105 1 15794 15794 10.074 0 1 5601 15071 3534 3538 7103 7103 0.06841584096355291 ELAPYLVY 8 Unmodified _ELAPYLVY_ 0 0 0 HUERS-P3b-int_dup471|chr22:25620605-25622022:-|1.2953558233011375|0.0147981606721775|6.45|151.0|2|1|sense HUERS-P3b-int_dup471|chr22:25620605-25622022:-|1.2953558233011375|0.0147981606721775|6.45|151.0|2|1|sense HUERS-P3b-int_dup471|chr22:25620605-25622022:-|1.2953558233011375|0.0147981606721775|6.45|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 484.2586975097656 2 484.260394 966.506234 NaN NaN NaN NaN NaN NaN NaN 28.327 1 28.327 27.827 28.827 0 0 0 0 0.28556 1 4332 4332 34.187 2.0704 1 5602 8460 3535 3539 7104 7104 0.021641508087100192 ELAQHEEL 8 Unmodified _ELAQHEEL_ 0 0 0 ENSG00000130173|ENST00000252453|ANGPTL8 ENSG00000130173|ENST00000252453|ANGPTL8 ENSG00000130173|ENST00000252453|ANGPTL8 MULTI-MSMS UPN47_class_I_Rep_2 3 484.7375183105469 2 484.737814 967.461075 -0.17248 -8.3608E-05 -1.5997 -0.00077543 -1.7722 -0.00085904 484.7376297622742 38.891 0.50726 42.269 42.144 42.651 3.3785 51 29 2 0 0 0 0.82752 1 7592 7592 3.9444 0.94915 1 72624 5603 2643 3536 3540 7105 7105 -0.023956997244795275 ELAQLVAKKK 10 Unmodified _ELAQLVAKKK_ 0 0 0 REV__ENSG00000156802|ENST00000287394|ATAD2 REV__ENSG00000156802|ENST00000287394|ATAD2 MSMS UPN48_class_I_Rep_3 7 564.35888671875 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 75.236 1 78.802 78.302 79.302 3.5659 0 0 0 0.53105 1 17663 17663 0.35063 0 1 + 5604 19806 3537 3541 7106 7106 0.14910839845219925 ELAQVIVSR 9 Unmodified _ELAQVIVSR_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587936.5_1_16:4862027-4863884:-|nuORF nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS UPN48_class_I_Rep_1 5 507.8003845214844 2 507.800749 1013.58694 0.23354 0.00011859 -0.075549 -3.8364E-05 0.15799 8.0226E-05 507.8007477062229 42.441 0.70837 45.949 45.685 46.393 3.5079 116 59 3 0 0 0 0.01765 4 7848 7808;7848;7890;7931 64.927 33.658 1 253080 5605 3186 3538 3542 7107;7108;7109;7110 7108 0.0806943185162936 ELAQVIVSR 9 Unmodified _ELAQVIVSR_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587936.5_1_16:4862027-4863884:-|nuORF nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS UPN48_class_I_Rep_2 6 507.8007507324219 2 507.800749 1013.58694 0.24718 0.00012552 -0.14227 -7.2245E-05 0.10491 5.3274E-05 507.8006488271126 42.144 0.67691 45.902 45.608 46.285 3.7579 128 66 3 0 0 0 0.14474 3 7737 7737;7774;7815 26.021 11.615 1 197010 5606 3186 3538 3542 7111;7112;7113 7111 0.0806943185162936 ELAQVIVSR 9 Unmodified _ELAQVIVSR_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587936.5_1_16:4862027-4863884:-|nuORF nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS UPN48_class_I_Rep_3 7 507.8008728027344 2 507.800749 1013.58694 0.18985 9.6406E-05 -0.1612 -8.1857E-05 0.028652 1.4549E-05 507.8006634005753 42.369 0.7122 46.01 45.659 46.372 3.6415 130 61 3 0 0 0 0.056914 4 7785 7701;7737;7785;7825 46.022 16.182 1 210240 5607 3186 3538 3542 7114;7115;7116;7117 7116 0.0806943185162936 ELARSVAWY 9 Unmodified _ELARSVAWY_ 0 0 0 REV__ENSG00000274286|ENST00000620793|ADRA2B REV__ENSG00000274286|ENST00000620793|ADRA2B MSMS UPN47_class_I_Rep_2 3 547.7852783203125 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 46.085 1 49.438 48.938 49.938 3.3534 0 0 0 0.37692 1 9771 9771 6.2058 0 1 + 5608 21426 3539 3543 7118 7118 0.012608588175226032 ELASVATPVL 10 Unmodified _ELASVATPVL_ 0 0 0 REV__L1M1_dup2106|chr3:195358111-195359463:+|3.0937383866908883|0.0185482389091233|7.38|151.0|82|2|anti-sense REV__L1M1_dup2106|chr3:195358111-195359463:+|3.0937383866908883|0.0185482389091233|7.38|151.0|82|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.78851318359375 2 500.289682 998.564812 0.26367 0.00013191 -2.6215 -0.0013115 -2.3579 -0.0011796 500.2896495911919 81.865 0.14305 85.189 85.126 85.269 3.3231 23 15 2 0 0 0 0.47413 1 20494 20494 13.906 3.0821 1 71252 + 5609 24035 3540 3544 7119 7119 0.06547207383187015 ELCIPTPLLM 10 Unmodified _ELCIPTPLLM_ 0 0 0 REV__nc|ENSG00000091128|A4D0S4-2|LAMB4 REV__nc|ENSG00000091128|A4D0S4-2|LAMB4 MSMS UPN48_class_I_Rep_1 5 565.3023681640625 2 565.303421 1128.59229 NaN NaN NaN NaN NaN NaN NaN 54.392 1 57.907 57.407 58.407 3.5143 0 0 0 0.53105 1 11512 11512 32.305 4.6767 1 + 5610 18015 3541 3545 7120 7120 0.033136513275394464 ELCSHTKRKP 10 Unmodified _ELCSHTKRKP_ 0 0 0 REV__HERVS71-int_dup37|chr4:9603584-9606392:+|2.7724930615632304|0.1437713606102606|4.27|150.0|79|3|sense REV__HERVS71-int_dup37|chr4:9603584-9606392:+|2.7724930615632304|0.1437713606102606|4.27|150.0|79|3|sense MSMS UPN47_class_I_Rep_1 2 599.8201293945312 2 599.821689 1197.62883 NaN NaN NaN NaN NaN NaN NaN 51.629 1 55.222 54.722 55.722 3.5932 0 0 0 0.53105 1 11425 11425 1.3295 0.36726 1 + 5611 23948 3542 3546 7121 7121 0.03791664268487693 ELDEIRAQA 9 Unmodified _ELDEIRAQA_ 0 0 0 REV__ENSG00000188385|ENST00000684848|JAKMIP3 REV__ENSG00000188385|ENST00000684848|JAKMIP3 MULTI-MSMS UPN47_class_I_Rep_1 2 522.769775390625 2 522.769645 1043.52474 0.27419 0.00014334 1.2488 0.00065282 1.5229 0.00079615 522.7702431872643 65.499 1.1018 68.855 68.552 69.654 3.3557 127 66 2 0 0 0 0.36392 1 15671 15671 10.074 0 1 302200 + 5612 20968 3543 3547 7122 7122 0.004716607126283634 ELDELHTHIT 10 Unmodified _ELDELHTHIT_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MULTI-MSMS UPN47_class_I_Rep_3 4 604.3017578125 2 604.30131 1206.58807 0.39507 0.00023874 0.1429 8.6357E-05 0.53797 0.0003251 604.3013569318393 61.596 1.5979 64.763 64.304 65.901 3.1667 347 112 5 0 0 0 0.51565 1 14668 14668 10.074 1.9184 1 4535300 + 5613 17642 3544 3548 7123 7123 -0.006963985701531783 ELDFLFYFF 9 Unmodified _ELDFLFYFF_ 0 0 0 HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|102|3|anti-sense HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|102|3|anti-sense HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|102|3|anti-sense MSMS UPN47_class_I_Rep_2 3 620.802734375 2 620.799883 1239.58521 NaN NaN NaN NaN NaN NaN NaN 48.47 1 51.816 51.316 52.316 3.3465 0 0 0 0.38478 1 10482 10482 4.3292 0.38484 1 5614 7841 3545 3549 7124 7124 -0.02499621957031195 ELDLLIAEEEE 11 Unmodified _ELDLLIAEEEE_ 0 0 0 nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8 nc|ENSG00000100918|O95072-2|REC8 nc|ENSG00000100918|O95072-2|REC8 MSMS UPN46_class_I_Rep_3 1 435.253173828125 3 434.881891 1301.62384 NaN NaN NaN NaN NaN NaN NaN 64.721 1 64.721 64.221 65.221 0 0 0 0 0.38417 1 14586 14586 0.50596 0 1 5615 1540 3546 3550 7125 7125 -0.014904059037689876 ELDRLYKEL 9 Unmodified _ELDRLYKEL_ 0 0 0 nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;ENST00000481128.1_1_1:223989797-223991008:-|nuORF nc|ENSG00000143514|Q13625-2|TP53BP2 nc|ENSG00000143514|Q13625-2|TP53BP2 MSMS UPN47_class_I_Rep_1 2 589.8253784179688 2 589.824421 1177.63429 NaN NaN NaN NaN NaN NaN NaN 60.704 1 64.086 63.586 64.586 3.3815 0 0 0 0.38916 1 14184 14184 3.2813 0 1 5616 3307 3547 3551 7126 7126 0.052576663319541694 ELDVRITAL 9 Unmodified _ELDVRITAL_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS UPN47_class_I_Rep_2 3 515.802734375 2 515.300581 1028.58661 0.10303 5.309E-05 0.3622 0.00018664 0.46523 0.00023973 515.8023794755916 61.82 0.30835 65.079 64.918 65.226 3.2594 29 21 2 0 0 0 0.19147 1 14581 14581 21.537 3.3906 1 110990 5617 886 3548 3552 7127 7127 0.07346012131756652 ELDVRITAL 9 Unmodified _ELDVRITAL_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS UPN47_class_I_Rep_3 4 515.30078125 2 515.300581 1028.58661 0.23252 0.00011982 -0.2881 -0.00014846 -0.055573 -2.8637E-05 515.3003291712698 61.874 0.41179 65.041 64.84 65.252 3.1667 38 28 2 0 0 0 0.19147 1 14642 14642 21.537 3.3906 1 84858 5618 886 3548 3552 7128 7128 0.07346012131756652 ELDVRITAL 9 Unmodified _ELDVRITAL_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 515.300581 1028.58661 0.27854 0.00014353 0.012103 6.2368E-06 0.29064 0.00014977 515.3004297830158 61.542 0.34083 64.91 64.726 65.067 3.3681 -0.10037 2.224E-05 NaN 21.537 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 103680 5619 886 3548 3552 0.07346012131756652 ELEDSTLRY 9 Unmodified _ELEDSTLRY_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MULTI-MSMS UPN47_class_I_Rep_1 2 563.274169921875 2 563.274761 1124.53497 0.010498 5.9134E-06 -0.20247 -0.00011405 -0.19197 -0.00010813 563.274516253925 41.944 0.61226 45.624 45.25 45.863 3.6792 57 42 2 0 0 0 0.37599 1 8439 8439 9.3831 9.3831 1 67084 5620 4818 3549 3553 7129 7129 -0.022317763528008072 ELEDSTLRY 9 Unmodified _ELEDSTLRY_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MSMS UPN47_class_I_Rep_2 3 563.2750244140625 2 563.274761 1124.53497 NaN NaN NaN NaN NaN NaN NaN 42.051 1 45.412 44.912 45.912 3.3611 0 0 0 0.38639 1 8536 8536 3.9444 0.3479 1 5621 4818 3549 3553 7130 7130 -0.022317763528008072 ELEDSTLRY 9 Unmodified _ELEDSTLRY_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MSMS UPN47_class_I_Rep_2 3 563.2736206054688 2 563.274761 1124.53497 NaN NaN NaN NaN NaN NaN NaN 42.167 1 45.528 45.028 46.028 3.3611 0 0 0 0.32573 1 8571 8571 9.3831 4.6271 1 5622 4818 3549 3553 7131 7131 -0.022317763528008072 ELEDSTLRY 9 Unmodified _ELEDSTLRY_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MSMS UPN47_class_I_Rep_2 3 563.3057861328125 2 563.274761 1124.53497 NaN NaN NaN NaN NaN NaN NaN 42.187 1 45.548 45.048 46.048 3.3611 0 0 0 0.2408 1 8577 8577 13.906 2.2658 1 5623 4818 3549 3553 7132 7132 -0.022317763528008072 ELEDSTLRY 9 Unmodified _ELEDSTLRY_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MULTI-MSMS UPN47_class_I_Rep_3 4 563.2750244140625 2 563.274761 1124.53497 0.073507 4.1404E-05 -0.6105 -0.00034388 -0.53699 -0.00030247 563.274411650335 42.211 0.361 45.45 45.29 45.651 3.2394 39 26 2 0 0 0 0.24936 2 8628 8628;8683 17.113 5.4726 1 66991 5624 4818 3549 3553 7133;7134 7133 -0.022317763528008072 ELEKDRPN 8 Unmodified _ELEKDRPN_ 0 0 0 REV__Kanga1b_dup228|chr10:21969244-21969744:+|1.05412567519553|0.0025483675619431|8.69|151.0|8|2|sense REV__Kanga1b_dup228|chr10:21969244-21969744:+|1.05412567519553|0.0025483675619431|8.69|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 500.73779296875 2 500.756538 999.498523 NaN NaN NaN NaN NaN NaN NaN 21.964 1 25.313 24.813 25.813 3.3496 0 0 0 0.40472 1 2548 2548 4.3292 0.73274 1 + 5625 23994 3550 3554 7135 7135 -0.001246084588501617 ELENGIRVA 9 Unmodified _ELENGIRVA_ 0 0 0 REV__nc|ENSG00000119139|Q9UDY2-4|TJP2 REV__nc|ENSG00000119139|Q9UDY2-4|TJP2 MULTI-MSMS UPN47_class_I_Rep_1 2 500.7754821777344 2 500.774731 999.534909 -0.14527 -7.2747E-05 0.26675 0.00013358 0.12148 6.0834E-05 500.7748847358488 43.404 0.6938 47.092 46.819 47.513 3.6875 66 39 2 0 0 0 0.46869 1 9011 9011 3.9444 0 1 123980 + 5626 18666 3551 3555 7136 7136 0.035122684378507074 ELENGRILY 9 Unmodified _ELENGRILY_ 0 0 0 REV__ENSG00000150627|ENST00000508596|WDR17 REV__ENSG00000150627|ENST00000508596|WDR17 MULTI-MSMS UPN47_class_I_Rep_2 3 553.813720703125 2 553.795663 1105.57677 0.51509 0.00028526 -0.17193 -9.5214E-05 0.34316 0.00019004 553.7954262003069 57.481 0.46708 60.772 60.486 60.953 3.2912 72 38 2 0 0 0 0.40174 1 13279 13279 7.9102 1.187 1 174120 + 5627 19635 3552 3556 7137 7137 0.028208241264110256 ELENGRILY 9 Unmodified _ELENGRILY_ 0 0 0 REV__ENSG00000150627|ENST00000508596|WDR17 REV__ENSG00000150627|ENST00000508596|WDR17 MULTI-MSMS UPN47_class_I_Rep_3 4 553.8138427734375 2 553.795663 1105.57677 0.35775 0.00019812 0.069283 3.8368E-05 0.42703 0.00023649 553.7956021026342 57.69 0.49017 60.858 60.509 60.999 3.1681 60 40 2 0 0 0 0.3898 1 13324 13324 8.5933 1.304 1 137820 + 5628 19635 3552 3556 7138 7138 0.028208241264110256 ELENGRILY 9 Unmodified _ELENGRILY_ 0 0 0 REV__ENSG00000150627|ENST00000508596|WDR17 REV__ENSG00000150627|ENST00000508596|WDR17 MULTI-MATCH UPN47_class_I_Rep_1 2 2 553.795663 1105.57677 0.40473 0.00022414 -1.8552 -0.0010274 -1.4505 -0.00080329 553.7946772057475 57.539 0.050804 60.976 60.952 61.003 3.437 0.10739 -0.0018542 NaN 8.5933 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 29064 + 5629 19635 3552 3556 0.028208241264110256 ELEPEKFQN 9 Unmodified _ELEPEKFQN_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS UPN47_class_I_Rep_3 4 567.2777099609375 2 567.277303 1132.54005 0.41864 0.00023748 0.087545 4.9662E-05 0.50618 0.00028715 567.2771702704767 55.632 0.77238 58.81 58.401 59.174 3.1779 76 48 2 0 0 0 0.47493 1 12716 12716 3.2813 0 1 125490 5630 1545 3553 3557 7139 7139 -0.02091472490178603 ELERLTSLY 9 Unmodified _ELERLTSLY_ 0 0 0 nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 MULTI-MSMS UPN47_class_I_Rep_1 2 563.3185424804688 2 562.303321 1122.59209 0.35482 0.00019952 -0.34473 -0.00019385 0.010089 5.6733E-06 562.303067114071 55.784 1.0762 59.263 58.78 59.856 3.4785 132 58 3 0 0 0 0.056917 1 12718 12718 46.021 2.1627 1 396420 5631 4069 3554 3558 7140 7140 0.03569690923586677 ELERLTSLY 9 Unmodified _ELERLTSLY_ 0 0 0 nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 MULTI-MSMS UPN47_class_I_Rep_3 4 563.3186645507812 2 562.303321 1122.59209 0.40353 0.00022691 -0.32923 -0.00018513 0.074298 4.1778E-05 562.3030353278743 56.145 0.97464 59.317 58.892 59.867 3.1721 153 62 3 0 0 0 0.25207 1 12920 12920 16.942 0.79319 1 358090 5632 4069 3554 3558 7141 7141 0.03569690923586677 ELERLTSLY 9 Unmodified _ELERLTSLY_ 0 0 0 nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 562.303321 1122.59209 0.51828 0.00029143 -0.45111 -0.00025366 0.067165 3.7767E-05 562.3029775081918 55.99 1.0702 59.295 58.855 59.925 3.3046 0.0030791 -7.8529E-05 NaN 46.021 158 63 3 NaN NaN NaN NaN 0 NaN NaN 0 411620 5633 4069 3554 3558 0.03569690923586677 ELERLTSLY 9 Unmodified _ELERLTSLY_ 0 0 0 nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 nc|ENSG00000164031|Q8TBM8-2|DNAJB14 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 562.303321 1122.59209 0.40353 0.00022691 -0.32923 -0.00018513 0.074298 4.1778E-05 562.3030353278743 56.145 0.97464 59.317 58.892 59.867 3.1721 0.025802 5.8542E-05 NaN 46.021 153 62 3 NaN NaN NaN NaN 0 NaN NaN 0 358090 5634 4069 3554 3558 0.03569690923586677 ELERQIEKL 9 Unmodified _ELERQIEKL_ 0 0 0 nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS UPN47_class_I_Rep_2 3 579.831298828125 2 579.32987 1156.64519 0.082144 4.7589E-05 0.040925 2.3709E-05 0.12307 7.1297E-05 579.3297408259233 42.267 0.6958 45.628 45.363 46.059 3.3611 72 53 2 0 0 0 0.47763 5 8573 8543;8573;8589;8639;8651 2.9952 0 1 66634 5635 1154 3555 3559 7142;7143;7144;7145;7146 7143 0.07313068706253034 ELESPPPPY 9 Unmodified _ELESPPPPY_ 0 0 0 nc|ENSG00000101665|O15105-3|SMAD7;ENSG00000101665|ENST00000262158|SMAD7 nc|ENSG00000101665|O15105-3|SMAD7 nc|ENSG00000101665|O15105-3|SMAD7 MSMS UPN46_class_I_Rep_3 1 514.8067016601562 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 37.762 1 37.762 37.262 38.262 0 0 0 0 0.28335 1 7134 7134 11.64 4.3511 1 5636 1584 3556 3560 7147 7147 -0.02641644921891384 ELFAAWNCF 9 Unmodified _ELFAAWNCF_ 0 0 0 L1MC5a_dup10565|chr10:50097897-50098264:-|1.4171444617142095|0.1539251290624134|3.2|151.0|21|2|anti-sense L1MC5a_dup10565|chr10:50097897-50098264:-|1.4171444617142095|0.1539251290624134|3.2|151.0|21|2|anti-sense L1MC5a_dup10565|chr10:50097897-50098264:-|1.4171444617142095|0.1539251290624134|3.2|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.749267578125 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 69.738 1 72.942 72.442 73.442 3.2044 0 0 0 0.39518 1 17021 17021 1.8442 0.51471 1 5637 11705 3557 3561 7148 7148 -0.06605861354273657 ELFAAWNCF 9 Unmodified _ELFAAWNCF_ 0 0 0 L1MC5a_dup10565|chr10:50097897-50098264:-|1.4171444617142095|0.1539251290624134|3.2|151.0|21|2|anti-sense L1MC5a_dup10565|chr10:50097897-50098264:-|1.4171444617142095|0.1539251290624134|3.2|151.0|21|2|anti-sense L1MC5a_dup10565|chr10:50097897-50098264:-|1.4171444617142095|0.1539251290624134|3.2|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.7490234375 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 69.875 1 73.079 72.579 73.579 3.2044 0 0 0 0.39518 1 17062 17062 1.8442 0 1 5638 11705 3557 3561 7149 7149 -0.06605861354273657 ELFCVFLCFC 10 Unmodified _ELFCVFLCFC_ 0 0 0 REV__AluJo_dup44030|chr10:69096698-69097015:+|4.195229088133118|0.1758793181953603|4.58|151.0|13|1|anti-sense REV__AluJo_dup44030|chr10:69096698-69097015:+|4.195229088133118|0.1758793181953603|4.58|151.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 612.2681274414062 2 612.268524 1222.52249 0.61203 0.00037472 0.54903 0.00033615 1.1611 0.00071088 612.2687062078168 75.466 0.48256 79.032 78.729 79.211 3.5659 92 50 2 0 0 0 0.55983 1 17763 17763 3.9444 1.2092 1 256210 + 5639 16996 3558 3562 7150 7150 -0.07986550612690735 ELFCVFLCFC 10 Unmodified _ELFCVFLCFC_ 0 0 0 REV__AluJo_dup44030|chr10:69096698-69097015:+|4.195229088133118|0.1758793181953603|4.58|151.0|13|1|anti-sense REV__AluJo_dup44030|chr10:69096698-69097015:+|4.195229088133118|0.1758793181953603|4.58|151.0|13|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 612.268524 1222.52249 0.48356 0.00029607 0.55319 0.0003387 1.0367 0.00063476 612.2689051302007 75.293 0.16584 78.883 78.772 78.938 3.59 -0.017588 -0.00013295 NaN 3.9444 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 135110 + 5640 16996 3558 3562 -0.07986550612690735 ELFCVFLCFC 10 Unmodified _ELFCVFLCFC_ 0 0 0 REV__AluJo_dup44030|chr10:69096698-69097015:+|4.195229088133118|0.1758793181953603|4.58|151.0|13|1|anti-sense REV__AluJo_dup44030|chr10:69096698-69097015:+|4.195229088133118|0.1758793181953603|4.58|151.0|13|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 612.268524 1222.52249 0.61203 0.00037472 0.54903 0.00033615 1.1611 0.00071088 612.2687062078168 75.466 0.48256 79.032 78.729 79.211 3.5659 0.13146 -0.00013804 NaN 3.9444 92 50 2 NaN NaN NaN NaN 0 NaN NaN 0 256210 + 5641 16996 3558 3562 -0.07986550612690735 ELFDFLHA 8 Unmodified _ELFDFLHA_ 0 0 0 ENST00000489056.5_1_1:46774806-46782253:+|nuORF;ENST00000496387.5_1_1:46775653-46782253:+|nuORF;ENSG00000233954|ENST00000696689|UQCRHL;ENSG00000173660|ENST00000311672|UQCRH;ENST00000460947.1_1_1:46775649-46782253:+|nuORF ENST00000489056.5_1_1:46774806-46782253:+|nuORF ENST00000489056.5_1_1:46774806-46782253:+|nuORF MSMS UPN47_class_I_Rep_3 4 496.29541015625 2 496.247818 990.481082 NaN NaN NaN NaN NaN NaN NaN 21.079 1 24.429 23.929 24.929 3.3496 0 0 0 0.40738 1 2296 2296 0.79363 0 1 5642 4641 3559 3563 7151 7151 -0.014539039938540554 ELFFVYAVKK 10 Unmodified _ELFFVYAVKK_ 0 0 0 REV__HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|14|2|sense REV__HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 415.2411193847656 3 415.241025 1242.70125 NaN NaN NaN NaN NaN NaN NaN 97.755 1 101.36 100.86 101.86 3.6088 0 0 0 0.53105 1 23579 23579 0.69767 0 1 + 5643 23599 3560 3564 7152 7152 0.08960321613699307 ELFPAPILR 9 Unmodified _ELFPAPILR_ 0 0 0 nc|ENSG00000132185|Q7L513-5|FCRLA;nc|ENSG00000132185|Q7L513-4|FCRLA;nc|ENSG00000132185|Q7L513-14|FCRLA;ENST00000470841.1_1_1:161681590-161683167:+|nuORF;nc|ENSG00000132185|Q7L513-11|FCRLA;nc|ENSG00000132185|Q7L513-3|FCRLA;nc|ENSG00000132185|Q7L513-12|FCRLA;ENSG00000132185|ENST00000236938|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-10|FCRLA nc|ENSG00000132185|Q7L513-5|FCRLA nc|ENSG00000132185|Q7L513-5|FCRLA MULTI-MSMS UPN48_class_I_Rep_1 5 528.3155517578125 2 528.316035 1054.61752 0.39088 0.00020651 -0.010162 -5.3686E-06 0.38071 0.00020114 528.3156897419673 66.513 0.30817 69.965 69.841 70.149 3.4516 26 20 2 0 0 0 0.28552 1 15245 15245 14.838 0 1 55216 5644 2736 3561 3565 7153 7153 0.09239210236660256 ELFSFWRIW 9 Unmodified _ELFSFWRIW_ 0 0 0 nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR MSMS UPN48_class_I_Rep_1 5 642.3303833007812 2 642.332216 1282.64988 NaN NaN NaN NaN NaN NaN NaN 25.676 1 29.243 28.743 29.743 3.5667 0 0 0 0.4007 1 3029 3029 0.52476 0 1 5645 1659 3562 3566 7154 7154 0.01985997639667403 ELFTVWMKD 9 Unmodified _ELFTVWMKD_ 0 0 0 REV__nc|ENSG00000159082|O43426-4|SYNJ1 REV__nc|ENSG00000159082|O43426-4|SYNJ1 MULTI-SECPEP UPN48_class_I_Rep_3 7 584.2877197265625 2 584.788992 1167.56343 0.46648 0.00027279 -1.0267 -0.00060038 -0.56019 -0.00032759 584.7888052175814 59.494 0.3199 63.011 62.819 63.139 3.5169 27 23 2 0 0 0 0.12281 1 12981 12981 4.3292 0.38484 1 75981 + 5646 19856 3563 3567 7155 7155 -0.01364749977210522 ELGGPEALNR 10 Unmodified _ELGGPEALNR_ 0 0 0 REV__L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|17|3|sense REV__L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|17|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 528.7791137695312 2 528.277638 1054.54072 0.19927 0.00010527 -0.1135 -5.9959E-05 0.085771 4.5311E-05 528.2775731867647 35.745 0.5162 35.745 35.455 35.971 0 54 34 2 0 0 0 0.55448 1 6554 6554 4.897 0.95262 1 110420 + 5647 28427 3564 3568 7156 7156 0.015633669495173308 ELGKEAVKL 9 Unmodified _ELGKEAVKL_ 0 0 0 L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|43|1|sense L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|43|1|sense L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|43|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.7978820800781 2 493.797675 985.580796 0.34697 0.00017133 -0.082956 -4.0964E-05 0.26402 0.00013037 493.79757620081125 54.85 1.2417 58.168 57.899 59.141 3.3187 156 69 3 0 0 0 0.26468 1 12706 12706 16.149 1.3108 1 699990 5648 14396 3565 3569 7157 7157 0.08742913620085346 ELGTEPRRAHE 11 Unmodified _ELGTEPRRAHE_ 0 0 0 ENST00000342963.2_1_7:5459517-5460286:+|nuORF ENST00000342963.2_1_7:5459517-5460286:+|nuORF ENST00000342963.2_1_7:5459517-5460286:+|nuORF MSMS UPN48_class_I_Rep_3 7 647.8314208984375 2 647.828557 1293.64256 NaN NaN NaN NaN NaN NaN NaN 60.105 1 63.622 63.122 64.122 3.5169 0 0 0 0.38417 1 13176 13176 1.0715 0.5467 1 5649 6240 3566 3570 7158 7158 0.007486133012889695 ELGYDLLGQI 10 Unmodified _ELGYDLLGQI_ 0 0 0 ENSG00000175426|ENST00000311106|PCSK1 ENSG00000175426|ENST00000311106|PCSK1 ENSG00000175426|ENST00000311106|PCSK1 MSMS UPN48_class_I_Rep_3 7 560.7967529296875 2 560.797872 1119.58119 NaN NaN NaN NaN NaN NaN NaN 48.462 1 52.096 51.596 52.596 3.6339 0 0 0 0.53105 1 9624 9624 2.9952 0 1 5650 4722 3567 3571 7159 7159 0.026182885492971764 ELHFFEPI 8 Unmodified _ELHFFEPI_ 0 0 0 REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|61|2|anti-sense REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|61|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.2631225585938 2 516.263468 1030.51238 0.010506 5.4236E-06 -0.55004 -0.00028396 -0.53953 -0.00027854 516.2630722314956 44.016 0.58945 47.258 46.979 47.568 3.2419 50 34 2 0 0 0 0.82752 1 9168 9168 4.756 1.1595 1 96207 + 5651 30482 3568 3572 7160 7160 -0.0016533095977138146 ELHILRLC 8 Unmodified _ELHILRLC_ 0 0 0 REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|168|1|anti-sense REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|168|1|anti-sense MSMS UPN48_class_I_Rep_1 5 498.7869567871094 2 498.786587 995.558621 NaN NaN NaN NaN NaN NaN NaN 69.214 1 72.669 72.169 73.169 3.4548 0 0 0 0.40604 1 16040 16040 2.5775 0 1 + 5652 25309 3569 3573 7161 7161 0.06066410670678124 ELHQVHGF 8 Unmodified _ELHQVHGF_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-SECPEP UPN48_class_I_Rep_2 6 483.9809875488281 2 483.743234 965.471915 0.18938 9.1613E-05 0.040867 1.9769E-05 0.23025 0.00011138 483.74328584778914 49.495 0.66784 53.19 52.943 53.611 3.6946 59 41 2 0 0 0 0.72333 1 10137 10137 4.756 4.756 1 126860 + 5653 21359 3570 3574 7162 7162 -0.01220252559517121 ELHVCCRE 8 Unmodified _ELHVCCRE_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense MSMS UPN48_class_I_Rep_2 6 494.7198791503906 2 494.720587 987.426621 NaN NaN NaN NaN NaN NaN NaN 48.768 1 52.485 51.985 52.985 3.7175 0 0 0 0.40643 1 9780 9780 2.0598 1.2661 1 + 5654 30238 3571 3575 7163 7163 -0.06759562408581132 ELIGSSLDFF 10 Unmodified _ELIGSSLDFF_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MULTI-MSMS UPN48_class_I_Rep_1 5 564.2850341796875 2 564.284597 1126.55464 0.47708 0.00026921 0.16449 9.2818E-05 0.64157 0.00036203 564.2846408952133 70.393 0.36226 73.853 73.629 73.991 3.4598 44 29 2 0 0 0 0.54822 1 16361 16361 5.7319 0 1 97759 5655 2243 3572 3576 7164 7164 -0.0035740034202262905 ELIGSSLDFF 10 Unmodified _ELIGSSLDFF_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MULTI-MSMS UPN48_class_I_Rep_3 7 564.2848510742188 2 564.284597 1126.55464 0.49461 0.0002791 0.084831 4.7869E-05 0.57945 0.00032697 564.2846292414483 70.168 0.37385 73.681 73.453 73.827 3.5128 44 28 2 0 0 0 0.52562 1 16168 16168 8.7454 1.1365 1 106000 5656 2243 3572 3576 7165 7165 -0.0035740034202262905 ELIHETVF 8 Unmodified _ELIHETVF_ 0 0 0 REV__L1MB4_dup1863|chr3:183848917-183850116:+|1.6503878578735045|0.1967283690440462|3.07|149.0|71|2|anti-sense REV__L1MB4_dup1863|chr3:183848917-183850116:+|1.6503878578735045|0.1967283690440462|3.07|149.0|71|2|anti-sense MSMS UPN48_class_I_Rep_1 5 494.2608337402344 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 45.912 1 49.428 48.928 49.928 3.5162 0 0 0 0.39819 1 8906 8906 8.5933 0 1 + 5657 25945 3573 3577 7166 7166 0.01350365177609092 ELIIGHTDN 9 Unmodified _ELIIGHTDN_ 0 0 0 HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 506.2586364746094 2 506.258914 1010.50327 -0.41156 -0.00020835 0.068347 3.4601E-05 -0.34321 -0.00017375 506.2588590767943 27.691 0.61394 31.033 30.816 31.43 3.3422 89 50 2 0 0 0 0.37599 1 4244 4244 9.3831 1.2276 1 129680 5658 8387 3574 3578 7167 7167 -0.0015572431609598425 ELIIGHTDN 9 Unmodified _ELIIGHTDN_ 0 0 0 HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.258914 1010.50327 -0.24204 -0.00012254 0.092382 4.6769E-05 -0.14966 -7.5767E-05 506.2588975025947 27.489 0.67415 31.255 30.899 31.573 3.7662 0.12416 2.3521E-05 NaN 9.3831 77 50 2 NaN NaN NaN NaN 0 NaN NaN 0 107150 5659 8387 3574 3578 -0.0015572431609598425 ELIIGHTDN 9 Unmodified _ELIIGHTDN_ 0 0 0 HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 506.258914 1010.50327 -0.22804 -0.00011545 0.060324 3.054E-05 -0.16772 -8.4908E-05 506.25888655939855 27.605 0.64412 31.104 30.801 31.445 3.4986 -0.026493 -8.9383E-06 NaN 9.3831 81 48 2 NaN NaN NaN NaN 0 NaN NaN 0 104030 5660 8387 3574 3578 -0.0015572431609598425 ELIIGHTDN 9 Unmodified _ELIIGHTDN_ 0 0 0 HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|304|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 506.258914 1010.50327 -0.41156 -0.00020835 0.068347 3.4601E-05 -0.34321 -0.00017375 506.2588590767943 27.691 0.61394 31.033 30.816 31.43 3.3422 -0.097667 -8.1498E-07 NaN 9.3831 89 50 2 NaN NaN NaN NaN 0 NaN NaN 0 129680 5661 8387 3574 3578 -0.0015572431609598425 ELIKALPAL 9 Unmodified _ELIKALPAL_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MSMS UPN47_class_I_Rep_2 3 484.3111572265625 2 484.312961 966.611368 NaN NaN NaN NaN NaN NaN NaN 112.66 1 116.17 115.67 116.67 3.5171 0 0 0 0.39518 1 27412 27412 1.8442 0 1 + 5662 21127 3575 3579 7168 7168 0.12672692005116915 ELIQDITQR 9 Unmodified _ELIQDITQR_ 0 0 0 ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN48_class_I_Rep_1 5 558.3069458007812 2 558.306395 1114.59824 0.46499 0.00025961 -0.68198 -0.00038075 -0.21699 -0.00012115 558.3059093789968 46.006 0.43096 49.522 49.241 49.672 3.5162 48 29 2 0 0 0 0.40701 1 8952 8952 7.609 2.3121 1 137900 5663 3458 3576 3580 7169 7169 0.045522091550765253 ELIQDITQR 9 Unmodified _ELIQDITQR_ 0 0 0 ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN48_class_I_Rep_2 6 558.3060302734375 2 558.306395 1114.59824 0.40897 0.00022833 -0.43228 -0.00024134 -0.023302 -1.301E-05 558.30594469727 45.674 0.47472 49.431 49.258 49.732 3.7579 57 35 2 0 0 0 0.17979 3 8837 8801;8837;8919 22.658 6.509 1 125160 5664 3458 3576 3580 7170;7171;7172 7171 0.045522091550765253 ELIQDITQR 9 Unmodified _ELIQDITQR_ 0 0 0 ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN48_class_I_Rep_3 7 558.3051147460938 2 558.306395 1114.59824 0.33126 0.00018494 -0.47387 -0.00026456 -0.14261 -7.962E-05 558.3060609681712 45.895 0.55434 49.532 49.33 49.885 3.6369 49 40 2 0 0 0 0.13455 3 8869 8821;8866;8869 27.223 6.8087 1 144190 5665 3458 3576 3580 7173;7174;7175 7175 0.045522091550765253 ELITKAVAA 9 Unmodified _ELITKAVAA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN47_class_I_Rep_1 2 458.2786865234375 2 458.279118 914.543683 -0.34119 -0.00015636 -0.0015602 -7.15E-07 -0.34275 -0.00015708 458.27903387086224 37.249 0.64563 40.917 40.616 41.262 3.6672 99 49 3 0 0 0 0.43153 1 7029 7029 6.2058 0 1 161450 5666 5211 3577 3581 7176 7176 0.08299242074326685 ELITKAVAA 9 Unmodified _ELITKAVAA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN47_class_I_Rep_2 3 458.2790222167969 2 458.279118 914.543683 -0.46703 -0.00021403 0.13596 6.2306E-05 -0.33108 -0.00015173 458.2791360340816 37.587 0.66463 40.976 40.616 41.281 3.3887 106 51 3 0 0 0 0.31407 1 7185 7185 13.042 6.3193 1 171570 5667 5211 3577 3581 7177 7177 0.08299242074326685 ELITKAVAA 9 Unmodified _ELITKAVAA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN47_class_I_Rep_3 4 458.27874755859375 2 458.279118 914.543683 -0.66549 -0.00030498 0.29138 0.00013353 -0.37411 -0.00017145 458.2791605691838 37.617 0.59521 40.858 40.631 41.226 3.2414 99 43 3 0 0 0 0.23293 1 7259 7259 18.146 6.5061 1 175930 5668 5211 3577 3581 7178 7178 0.08299242074326685 ELIVKKSLVPS 11 Unmodified _ELIVKKSLVPS_ 0 0 0 MSTB1_dup3406|chr12:104514542-104514881:-|1.4697728438935491|0.0037172289292616|8.63|151.0|13|3|sense MSTB1_dup3406|chr12:104514542-104514881:-|1.4697728438935491|0.0037172289292616|8.63|151.0|13|3|sense MSTB1_dup3406|chr12:104514542-104514881:-|1.4697728438935491|0.0037172289292616|8.63|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 404.92291259765625 3 404.923585 1211.74892 -0.10445 -4.2294E-05 -0.51064 -0.00020677 -0.61509 -0.00024906 404.9233805871714 37.116 0.47609 40.623 40.254 40.73 3.507 73 47 2 0 0 0 0.68024 1 6189 6189 0.50596 0.051438 1 168610 5669 16583 3578 3582 7179 7179 0.15151975813887475 ELKEKKKEL 9 Unmodified _ELKEKKKEL_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MULTI-SECPEP UPN47_class_I_Rep_1 2 572.8497314453125 2 572.850438 1143.68632 -0.14512 -8.3133E-05 0.005516 3.1598E-06 -0.13961 -7.9974E-05 572.8503500532406 13.253 0.39684 16.71 16.618 17.015 3.457 88 46 3 0 0 0 0.12207 1 272 272 5.7319 0 1 209270 5670 1101 3579 3583 7180 7180 0.12022829745728814 ELKEKKKEL 9 Unmodified _ELKEKKKEL_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS UPN47_class_I_Rep_2 3 572.8505859375 2 572.850438 1143.68632 0.048496 2.7781E-05 -0.28439 -0.00016291 -0.23589 -0.00013513 572.8502117612999 13.316 0.35963 16.704 16.599 16.958 3.388 86 43 3 0 0 0 0.14474 1 284 284 26.021 3.3626 1 134170 5671 1101 3579 3583 7181 7181 0.12022829745728814 ELKEKKKEL 9 Unmodified _ELKEKKKEL_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS UPN47_class_I_Rep_3 4 572.8501586914062 2 572.850438 1143.68632 -0.43625 -0.00024991 0.22678 0.00012991 -0.20947 -0.00012 572.8505031706576 13.359 0.43852 16.733 16.641 17.079 3.3734 100 53 3 0 0 0 0.17979 2 289 289;318 22.658 3.2961 1 100410 5672 1101 3579 3583 7182;7183 7182 0.12022829745728814 ELKFKTGL 8 Unmodified _ELKFKTGL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;nc|ENSG00000166888|P42226-3|STAT6 ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN47_class_I_Rep_1 2 468.2813415527344 2 468.28166 934.548768 -0.31361 -0.00014686 -0.11131 -5.2126E-05 -0.42492 -0.00019898 468.281494283906 38.84 0.94501 42.505 42.132 43.077 3.6652 136 61 3 0 0 0 0.82752 4 7597 7480;7519;7556;7597 58.679 18.721 1 439950 5673 4272 3580 3584 7184;7185;7186;7187 7187 0.07887545936955576 ELKFKTGL 8 Unmodified _ELKFKTGL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;nc|ENSG00000166888|P42226-3|STAT6 ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN47_class_I_Rep_2 3 468.2812194824219 2 468.28166 934.548768 -0.35578 -0.00016661 0.0019216 8.9985E-07 -0.35386 -0.00016571 468.2815350564801 39.123 0.95525 42.501 42.253 43.208 3.3785 119 55 3 0 0 0 0.82752 4 7605 7605;7647;7692;7738 34.402 9.0024 1 293710 5674 4272 3580 3584 7188;7189;7190;7191 7188 0.07887545936955576 ELKFKTGL 8 Unmodified _ELKFKTGL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;nc|ENSG00000166888|P42226-3|STAT6 ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN47_class_I_Rep_3 4 468.281494140625 2 468.28166 934.548768 -0.52998 -0.00024818 0.10569 4.9492E-05 -0.42429 -0.00019869 468.2815944493481 39.374 0.96603 42.612 42.263 43.229 3.238 146 65 3 0 0 0 0.82752 5 7829 7709;7748;7790;7829;7869 49.933 15.831 1 331510 5675 4272 3580 3584 7192;7193;7194;7195;7196 7195 0.07887545936955576 ELKGGKAFQ 9 Unmodified _ELKGGKAFQ_ 0 0 0 REV__ENSG00000078269|ENST00000355585|SYNJ2 REV__ENSG00000078269|ENST00000355585|SYNJ2 MULTI-SECPEP UPN46_class_I_Rep_3 1 488.707763671875 2 489.274367 976.53418 0.21343 0.00010443 -0.49536 -0.00024237 -0.28193 -0.00013794 489.2723092596677 59.588 0.039104 59.588 59.56 59.599 0 6 4 2 0 0 0 0.12354 1 13184 13184 1.4819 0 1 56760 + 5676 17885 3581 3585 7197 7197 0.04497473788808293 ELKGKKKK 8 Unmodified _ELKGKKKK_ 0 0 0 HAL1M8_dup1429|chr12:11824794-11825457:+|2.8534260658759063|0.0288418357521173|6.63|151.0|13|2|sense HAL1M8_dup1429|chr12:11824794-11825457:+|2.8534260658759063|0.0288418357521173|6.63|151.0|13|2|sense HAL1M8_dup1429|chr12:11824794-11825457:+|2.8534260658759063|0.0288418357521173|6.63|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 479.82257080078125 2 479.824027 957.633501 NaN NaN NaN NaN NaN NaN NaN 48.273 1 51.955 51.455 52.455 3.6819 0 0 0 0.40738 1 10399 10399 0.79363 0 1 5677 7934 3582 3586 7198 7198 0.15298916473557256 ELKIGNHDSFN 11 Unmodified _ELKIGNHDSFN_ 0 0 0 REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|86|2|sense REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|86|2|sense MSMS UPN48_class_I_Rep_1 5 637.3128662109375 2 637.312209 1272.60986 NaN NaN NaN NaN NaN NaN NaN 45.557 1 49.073 48.573 49.573 3.5162 0 0 0 0.38417 1 8797 8797 0.96228 0.2719 1 + 5678 25292 3583 3587 7199 7199 -0.015535938215634815 ELKILEIN 8 Unmodified _ELKILEIN_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MSMS UPN47_class_I_Rep_3 4 486.2918701171875 2 486.292225 970.569897 0.15684 7.6272E-05 -0.34607 -0.00016829 -0.18923 -9.202E-05 486.29202455889174 71.497 0.71436 74.716 74.498 75.212 3.2188 90 57 2 0 0 0 0.82752 1 17551 17551 36.127 0 1 202880 + 5679 20955 3584 3588 7200 7200 0.08343511245800528 ELKILLEFMF 10 Unmodified _ELKILLEFMF_ 0 0 0 HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 641.85888671875 2 641.859418 1281.70428 0.74985 0.0004813 -1.1303 -0.00072549 -0.38045 -0.00024419 641.8582207996363 107.66 0.13203 107.66 107.62 107.75 0 29 19 2 0 0 0 0.48573 1 26272 26272 13.042 0.80181 1 58953000 5680 8171 3585 3589 7201 7201 0.07469828676198631 ELKILLEFMF 10 Unmodified _ELKILLEFMF_ 0 0 0 HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 641.8590087890625 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 108.43 1 108.43 107.93 108.93 0 0 0 0 0.53105 1 26515 26515 8.7454 0.58988 1 5681 8171 3585 3589 7202 7202 0.07469828676198631 ELKITELM 8 Unmodified _ELKITELM_ 0 0 0 L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|32|2|sense L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|32|2|sense L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|32|2|sense MSMS UPN46_class_I_Rep_3 1 488.7349548339844 2 488.772811 975.531069 NaN NaN NaN NaN NaN NaN NaN 36.684 1 36.684 36.184 37.184 0 0 0 0 0.40659 1 6827 6827 1.8442 0 1 5682 9906 3586 3590 7203 7203 0.04232462619791022 ELKKMKKRLRP 11 Unmodified _ELKKMKKRLRP_ 0 0 0 REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.30609130859375 3 476.306146 1425.89661 NaN NaN NaN NaN NaN NaN NaN 59.889 1 59.889 59.389 60.389 0 0 0 0 0.38417 1 13262 13262 0.40827 0 1 + 5683 22428 3587 3591 7204 7204 0.20069588866908816 ELKKVLIIYL 10 Unmodified _ELKKVLIIYL_ 0 0 0 HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense MSMS UPN47_class_I_Rep_2 3 616.4070434570312 2 616.40485 1230.79515 NaN NaN NaN NaN NaN NaN NaN 85.992 1 89.425 88.925 89.925 3.4329 0 0 0 0.53105 1 21392 21392 1.4819 0 1 5684 8341 3588 3592 7205 7205 0.1889804071602157 ELKKVLIIYL 10 Unmodified _ELKKVLIIYL_ 0 0 0 HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense MSMS UPN48_class_I_Rep_1 5 616.2529296875 2 616.40485 1230.79515 NaN NaN NaN NaN NaN NaN NaN 112.23 1 115.86 115.36 116.36 3.6321 0 0 0 0.53105 1 27226 27226 1.4819 0 1 5685 8341 3588 3592 7206 7206 0.1889804071602157 ELKKVLIIYL 10 Unmodified _ELKKVLIIYL_ 0 0 0 HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|37|2|sense MSMS UPN48_class_I_Rep_2 6 616.4071655273438 2 616.40485 1230.79515 NaN NaN NaN NaN NaN NaN NaN 82.259 1 85.928 85.428 86.428 3.669 0 0 0 0.53105 1 19538 19538 1.4819 0 1 5686 8341 3588 3592 7207 7207 0.1889804071602157 ELKLILTYYI 10 Unmodified _ELKLILTYYI_ 0 0 0 REV__Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense REV__Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 634.8779296875 2 634.878665 1267.74278 NaN NaN NaN NaN NaN NaN NaN 107.29 1 110.82 110.32 111.32 3.5345 0 0 0 0.53105 1 25955 25955 5.7319 0 1 + 5687 32623 3589 3593 7208 7208 0.11961457582378898 ELKLLRSFVY 10 Unmodified _ELKLLRSFVY_ 0 0 0 REV__L1MC4a_dup3736|chr6:72643829-72644096:+|1.1254608506396813|0.0010349833118144|10.09|146.0|16|2|anti-sense REV__L1MC4a_dup3736|chr6:72643829-72644096:+|1.1254608506396813|0.0010349833118144|10.09|146.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 634.3779296875 2 634.374081 1266.73361 NaN NaN NaN NaN NaN NaN NaN 107.96 1 107.96 107.46 108.46 0 0 0 0 0.53105 1 26349 26349 3.5965 0 1 + 5688 26986 3590 3594 7209 7209 0.11091109016706469 ELKLTPHLK 9 Unmodified _ELKLTPHLK_ 0 0 0 REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF MSMS UPN48_class_I_Rep_2 6 539.8319702148438 2 539.834591 1077.65463 NaN NaN NaN NaN NaN NaN NaN 85.729 1 89.435 88.935 89.935 3.7058 0 0 0 0.3967 1 20396 20396 1.4819 0 1 + 5689 21050 3591 3595 7210 7210 0.11890881782414908 ELKPLQQLR 9 Unmodified _ELKPLQQLR_ 0 0 0 L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 562.844970703125 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.41 1 108.41 107.91 108.91 0 0 0 0 0.29868 1 26509 26509 10.824 0 1 5690 15387 3592 3596 7211 7211 0.11445382668375714 ELKPLQQLR 9 Unmodified _ELKPLQQLR_ 0 0 0 L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 562.8433227539062 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.14 1 111.78 111.28 112.28 3.6355 0 0 0 0.31276 1 26538 26538 10.074 0 1 5691 15387 3592 3596 7212 7212 0.11445382668375714 ELKPLQQLR 9 Unmodified _ELKPLQQLR_ 0 0 0 L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|11|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 562.8433227539062 2 562.842948 1123.67134 0.50506 0.00028427 -0.084937 -4.7806E-05 0.42012 0.00023646 562.8428187114564 107.86 0.35838 111.53 111.48 111.83 3.6724 37 24 2 0 0 0 0.118 1 26538 26538 10.074 0.6908 1 27962000 5692 15387 3592 3596 7213 7213 0.11445382668375714 ELKPPGMVVVV 11 Unmodified _ELKPPGMVVVV_ 0 0 0 REV__ENST00000399449.3_1_10:75487125-75488312:-|nuORF REV__ENST00000399449.3_1_10:75487125-75488312:-|nuORF MSMS UPN48_class_I_Rep_1 5 584.3450317382812 2 584.343935 1166.67332 NaN NaN NaN NaN NaN NaN NaN 103.17 1 106.79 106.29 107.29 3.6164 0 0 0 0.38417 1 24872 24872 1.1933 0.50296 1 + 5693 22150 3593 3597 7214 7214 0.0966467536197797 ELKQGLYEL 9 Unmodified _ELKQGLYEL_ 0 0 0 nc|ENSG00000239264|Q8NBS9-2|TXNDC5;ENSG00000239264|ENST00000379757|TXNDC5 nc|ENSG00000239264|Q8NBS9-2|TXNDC5 nc|ENSG00000239264|Q8NBS9-2|TXNDC5 MULTI-MSMS UPN47_class_I_Rep_3 4 546.800537109375 2 546.800414 1091.58628 0.42214 0.00023083 0.066606 3.642E-05 0.48875 0.00026725 546.800386293355 64.845 1.2302 68.024 67.565 68.796 3.1795 280 95 4 0 0 0 0.31407 1 15741 15741 13.042 0 1 2196600 5694 5695 3594 3598 7215 7215 0.04414592411922058 ELKQVRGSI 9 Unmodified _ELKQVRGSI_ 0 0 0 REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|44|2|sense REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|44|2|sense MSMS UPN47_class_I_Rep_2 3 515.3056030273438 2 515.306198 1028.59784 NaN NaN NaN NaN NaN NaN NaN 87.725 1 91.172 90.672 91.672 3.4471 0 0 0 0.38784 1 21808 21808 3.5965 0 1 + 5695 31295 3595 3599 7216 7216 0.08468834225914179 ELKQVRGSI 9 Unmodified _ELKQVRGSI_ 0 0 0 REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|44|2|sense REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|44|2|sense MSMS UPN48_class_I_Rep_3 7 515.3070068359375 2 515.306198 1028.59784 NaN NaN NaN NaN NaN NaN NaN 87.671 1 91.461 90.961 91.961 3.7905 0 0 0 0.38784 1 20802 20802 3.5965 0 1 + 5696 31295 3595 3599 7217 7217 0.08468834225914179 ELKVKFYKR 9 Unmodified _ELKVKFYKR_ 0 0 0 L1PA10_dup1412|chr3:172177687-172178080:-|1.5837624641827102|0.0166003686589012|6.58|151.0|15|3|sense L1PA10_dup1412|chr3:172177687-172178080:-|1.5837624641827102|0.0166003686589012|6.58|151.0|15|3|sense L1PA10_dup1412|chr3:172177687-172178080:-|1.5837624641827102|0.0166003686589012|6.58|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 404.24871826171875 3 404.248403 1209.72338 NaN NaN NaN NaN NaN NaN NaN 44.837 1 44.837 44.337 45.337 0 0 0 0 0.39887 1 9067 9067 0.96228 0.18574 1 5697 13581 3596 3600 7218 7218 0.12690546082126275 ELLAKIPV 8 Unmodified _ELLAKIPV_ 0 0 0 HERV4_I-int_dup311|chr19:58253118-58253438:-|1.522750061622571|0.0900250362709217|4.08|151.0|5|2|sense HERV4_I-int_dup311|chr19:58253118-58253438:-|1.522750061622571|0.0900250362709217|4.08|151.0|5|2|sense HERV4_I-int_dup311|chr19:58253118-58253438:-|1.522750061622571|0.0900250362709217|4.08|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 441.7879943847656 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 45.248 1 45.248 44.748 45.748 0 0 0 0 0.40643 1 9183 9183 2.0598 0 1 5698 8061 3597 3601 7219 7219 0.11308733942337312 ELLAKIPV 8 Unmodified _ELLAKIPV_ 0 0 0 HERV4_I-int_dup311|chr19:58253118-58253438:-|1.522750061622571|0.0900250362709217|4.08|151.0|5|2|sense HERV4_I-int_dup311|chr19:58253118-58253438:-|1.522750061622571|0.0900250362709217|4.08|151.0|5|2|sense HERV4_I-int_dup311|chr19:58253118-58253438:-|1.522750061622571|0.0900250362709217|4.08|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 441.7877502441406 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 45.894 1 45.894 45.394 46.394 0 0 0 0 0.40643 1 9368 9368 2.0598 0 1 5699 8061 3597 3601 7220 7220 0.11308733942337312 ELLAQQKR 8 Unmodified _ELLAQQKR_ 0 0 0 L1M5_dup41057|chr13:28005645-28005961:-|2.72156896609232|0.0117799501046325|7.85|150.0|6|2|sense L1M5_dup41057|chr13:28005645-28005961:-|2.72156896609232|0.0117799501046325|7.85|150.0|6|2|sense L1M5_dup41057|chr13:28005645-28005961:-|2.72156896609232|0.0117799501046325|7.85|150.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 493.2865905761719 2 493.293091 984.571629 NaN NaN NaN NaN NaN NaN NaN 41.07 1 41.07 40.57 41.57 0 0 0 0 0.40404 1 8017 8017 5.2307 0.47466 1 5700 9164 3598 3602 7221 7221 0.07872565054435654 ELLARKTK 8 Unmodified _ELLARKTK_ 0 0 0 REV__L1M4b_dup2143|chr9:33322218-33323472:+|4.031221749129388|0.1888331622304721|4.42|151.0|28|2|sense REV__L1M4b_dup2143|chr9:33322218-33323472:+|4.031221749129388|0.1888331622304721|4.42|151.0|28|2|sense MSMS UPN47_class_I_Rep_2 3 479.8058776855469 2 479.805834 957.597115 NaN NaN NaN NaN NaN NaN NaN 24.918 1 28.401 27.901 28.901 3.483 0 0 0 0.40746 1 3381 3381 0.69038 0 1 + 5701 24532 3599 3603 7222 7222 0.11662039576856387 ELLCFYPFY 9 Unmodified _ELLCFYPFY_ 0 0 0 REV__L1MC1_dup8682|chr10:63507664-63510007:-|3.865095307413728|0.0449743571010058|6.43|151.0|127|2|anti-sense REV__L1MC1_dup8682|chr10:63507664-63510007:-|3.865095307413728|0.0449743571010058|6.43|151.0|127|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 597.7801513671875 2 597.780636 1193.54672 -0.089109 -5.3268E-05 -0.3866 -0.0002311 -0.47571 -0.00028437 597.7802632286047 36.226 0.47469 39.481 39.093 39.568 3.2547 40 33 2 0 0 0 0.40174 1 6791 6791 7.9102 1.7044 1 64984 + 5702 26607 3600 3604 7223 7223 -0.04231250863176683 ELLEPWRW 8 Unmodified _ELLEPWRW_ 0 0 0 AluSx_dup75884|chr12:55778134-55778440:-|1.0041819996192476|0.0251728812467888|5.32|151.0|4|1|sense AluSx_dup75884|chr12:55778134-55778440:-|1.0041819996192476|0.0251728812467888|5.32|151.0|4|1|sense AluSx_dup75884|chr12:55778134-55778440:-|1.0041819996192476|0.0251728812467888|5.32|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 564.7972412109375 2 564.795466 1127.57638 NaN NaN NaN NaN NaN NaN NaN 25.711 1 29.277 28.777 29.777 3.5667 0 0 0 0.40625 1 3039 3039 2.3027 0 1 5703 297 3601 3605 7224 7224 0.01769449197195172 ELLERCNEAA 10 Unmodified _ELLERCNEAA_ 0 0 0 REV__ENST00000392830.6_1_12:107378988-107380915:-|nuORF REV__ENST00000392830.6_1_12:107378988-107380915:-|nuORF MSMS UPN47_class_I_Rep_3 4 574.2728271484375 2 574.274238 1146.53392 NaN NaN NaN NaN NaN NaN NaN 78.563 1 81.845 81.345 82.345 3.2816 0 0 0 0.53105 1 19597 19597 1.3295 0.63916 1 + 5704 21504 3602 3606 7225 7225 -0.033483139933423445 ELLETVNVCS 10 Unmodified _ELLETVNVCS_ 0 0 0 MER67A_dup429|chr20:47236632-47237095:+|1.722067504810289|0.3662218723878533|2.23|151.0|23|1|anti-sense MER67A_dup429|chr20:47236632-47237095:+|1.722067504810289|0.3662218723878533|2.23|151.0|23|1|anti-sense MER67A_dup429|chr20:47236632-47237095:+|1.722067504810289|0.3662218723878533|2.23|151.0|23|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 553.8136596679688 2 553.773539 1105.53253 0.51506 0.00028523 -2.6523 -0.0014688 -2.1372 -0.0011835 553.7721733147501 57.491 0.075024 60.783 60.734 60.809 3.2912 8 5 2 0 0 0 0.84575 1 13235 13235 8.7454 0 1 32914 5705 16190 3603 3607 7226 7226 -0.016019480821341858 ELLHFLLMVK 10 Unmodified _ELLHFLLMVK_ 0 0 0 L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|51|3|anti-sense L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|51|3|anti-sense L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|51|3|anti-sense MSMS UPN48_class_I_Rep_2 6 621.8653564453125 2 621.867577 1241.7206 NaN NaN NaN NaN NaN NaN NaN 74.872 1 78.462 77.962 78.962 3.59 0 0 0 0.53105 1 17635 17635 1.4819 0 1 5706 9007 3604 3608 7227 7227 0.10940954632974353 ELLKRPIHK 9 Unmodified _ELLKRPIHK_ 0 0 0 REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|4|1|sense REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 567.3630981445312 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 46.04 1 49.393 48.893 49.893 3.3534 0 0 0 0.39598 1 9758 9758 1.6526 0.96225 1 + 5707 26195 3605 3609 7228 7228 0.1470167928491719 ELLPTPQNL 9 Unmodified _ELLPTPQNL_ 0 0 0 ENST00000522111.2_2_1:27321037-27326424:+|nuORF ENST00000522111.2_2_1:27321037-27326424:+|nuORF ENST00000522111.2_2_1:27321037-27326424:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 512.7870483398438 2 512.787307 1023.56006 0.044193 2.2662E-05 -0.93515 -0.00047953 -0.89095 -0.00045687 513.2880164648719 65.348 0.55444 68.604 68.358 68.913 3.2556 54 40 2 0 0 0 0.47493 1 15578 15578 3.2813 0.28607 1 64012 5708 7240 3606 3610 7229 7229 0.04922323240418791 ELLQLVFVN 9 Unmodified _ELLQLVFVN_ 0 0 0 REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|91|2|anti-sense REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|91|2|anti-sense MSMS UPN46_class_I_Rep_3 1 537.8133544921875 2 537.813325 1073.6121 NaN NaN NaN NaN NaN NaN NaN 109.8 1 109.8 109.3 110.3 0 0 0 0 0.37476 1 27003 27003 6.7232 0 1 + 5709 24248 3607 3611 7230 7230 0.07823486654183398 ELLSALVVL 9 Unmodified _ELLSALVVL_ 0 0 0 L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|237|2|anti-sense L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|237|2|anti-sense L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|237|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.80474853515625 2 478.804968 955.595384 0.11025 5.2787E-05 0.035522 1.7008E-05 0.14577 6.9795E-05 478.8048117056256 64.18 0.30063 67.536 67.334 67.635 3.3557 45 24 2 0 0 0 0.26948 1 15249 15249 15.847 0 1 117660 5710 15060 3608 3612 7231 7231 0.11580985768239316 ELLSLTCSHI 10 Unmodified _ELLSLTCSHI_ 0 0 0 ENSG00000141627|ENST00000675505|DYM ENSG00000141627|ENST00000675505|DYM ENSG00000141627|ENST00000675505|DYM MSMS UPN48_class_I_Rep_1 5 558.3049926757812 2 558.291899 1114.56925 NaN NaN NaN NaN NaN NaN NaN 45.89 1 49.406 48.906 49.906 3.5162 0 0 0 0.53105 1 8899 8899 13.906 0 1 5711 3228 3609 3613 7232 7232 0.01654348534430028 ELMDFYIY 8 Unmodified _ELMDFYIY_ 0 0 0 L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|44|2|anti-sense L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|44|2|anti-sense L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|44|2|anti-sense MSMS UPN46_class_I_Rep_3 1 547.249267578125 2 547.249169 1092.48378 NaN NaN NaN NaN NaN NaN NaN 62.191 1 62.191 61.691 62.691 0 0 0 0 0.39408 1 13892 13892 10.183 0 1 5712 11722 3610 3614 7233 7233 -0.05875816651200694 ELNGIKAAHH 10 Unmodified _ELNGIKAAHH_ 0 0 0 REV__ENST00000480912.5_1_6:31847863-31860642:-|nuORF REV__ENST00000480912.5_1_6:31847863-31860642:-|nuORF MSMS UPN47_class_I_Rep_3 4 545.2924194335938 2 545.293622 1088.57269 NaN NaN NaN NaN NaN NaN NaN 26.519 1 29.867 29.367 30.367 3.3478 0 0 0 0.53105 1 3891 3891 4.897 0.141 1 + 5713 21190 3611 3615 7234 7234 0.031947794233246896 ELNYEASLY 9 Unmodified _ELNYEASLY_ 0 0 0 REV__ENST00000485983.6_1_3:9079745-9122942:-|nuORF REV__ENST00000485983.6_1_3:9079745-9122942:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 550.7721557617188 2 551.258579 1100.50261 0.38713 0.00021341 0.16309 8.9907E-05 0.55022 0.00030332 551.258681599304 56.027 0.57461 59.506 59.239 59.814 3.4785 54 31 2 0 0 0 0.10927 1 12786 12786 16.149 2.2431 1 140910 + 5714 21022 3612 3616 7235 7235 -0.043625637557852315 ELPASPWQC 9 Unmodified _ELPASPWQC_ 0 0 0 LTR12C_dup2424|chr17:17955693-17957026:-|1.4949603188831904|0.0906978426137445|4.04|151.0|54|2|anti-sense LTR12C_dup2424|chr17:17955693-17957026:-|1.4949603188831904|0.0906978426137445|4.04|151.0|54|2|anti-sense LTR12C_dup2424|chr17:17955693-17957026:-|1.4949603188831904|0.0906978426137445|4.04|151.0|54|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7986450195312 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 30.528 1 34.163 33.663 34.663 3.6351 0 0 0 0.39518 1 4481 4481 1.8442 1.0506 1 5715 15542 3613 3617 7236 7236 -0.05458451733943548 ELPGMFAKK 9 Unmodified _ELPGMFAKK_ 0 0 0 REV__ENST00000437106.1_1_21:37541270-37541486:-|nuORF REV__ENST00000437106.1_1_21:37541270-37541486:-|nuORF MSMS UPN47_class_I_Rep_1 2 510.7830505371094 2 510.78097 1019.54739 NaN NaN NaN NaN NaN NaN NaN 28.533 1 32.299 31.799 32.799 3.7662 0 0 0 0.39428 1 4408 4408 2.0598 0.21551 1 + 5716 22313 3614 3618 7237 7237 0.0383958857653397 ELPRGWEI 8 Unmodified _ELPRGWEI_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MSMS UPN47_class_I_Rep_2 3 500.2665100097656 2 500.266542 998.51853 0.29224 0.0001462 -0.57006 -0.00028518 -0.27782 -0.00013898 500.76765637417395 55.512 0.19888 58.822 58.674 58.873 3.3102 15 10 2 0 0 0 0.82752 1 12610 12610 6.2058 2.2614 1 69607 5717 675 3615 3619 7238 7238 0.01921187271761937 ELPRLLHFV 9 Unmodified _ELPRLLHFV_ 0 0 0 REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|133|1|anti-sense REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|133|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3349609375 2 562.334759 1122.65496 0.50418 0.00028352 0.80527 0.00045283 1.3095 0.00073635 562.3345812860092 108.67 0.68864 112.21 112.09 112.78 3.5382 284 80 4 0 0 0 0.42249 1 26725 26725 6.7232 0 1 114320000 + 5718 28824 3616 3620 7239 7239 0.09854301502286944 ELPSPLPQFL 10 Unmodified _ELPSPLPQFL_ 0 0 0 L1MC4a_dup5382|chr9:92397630-92398788:-|1.6436993503430513|0.0210319066155928|6.29|151.0|72|2|anti-sense L1MC4a_dup5382|chr9:92397630-92398788:-|1.6436993503430513|0.0210319066155928|6.29|151.0|72|2|anti-sense L1MC4a_dup5382|chr9:92397630-92398788:-|1.6436993503430513|0.0210319066155928|6.29|151.0|72|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 571.3201904296875 2 570.818607 1139.62266 0.52153 0.0002977 -0.85103 -0.00048579 -0.3295 -0.00018809 570.8186462157876 70.764 0.56616 74.283 74.044 74.61 3.5185 87 59 2 0 0 0 0.44401 1 16453 16453 16.149 0.90062 1 319130 5719 11593 3617 3621 7240 7240 0.058434693086155676 ELPSSLSFPR 10 Unmodified _ELPSSLSFPR_ 0 0 0 ENST00000591625.5_3_17:76993904-77001537:-|nuORF;ENST00000592033.5_1_17:76993706-77001537:-|nuORF;ENST00000592887.1_1_17:76993904-77002146:-|nuORF;ENST00000588075.5_3_17:76993904-76996331:-|nuORF;ENST00000588611.5_1_17:76993706-77001537:-|nuORF ENST00000591625.5_3_17:76993904-77001537:-|nuORF ENST00000591625.5_3_17:76993904-77001537:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 566.8034057617188 2 566.803488 1131.59242 0.49037 0.00027795 -0.44393 -0.00025162 0.046444 2.6325E-05 566.8031946405215 56.059 0.9212 59.56 59.122 60.043 3.5014 170 68 3 0 0 0 0.1198 7 12002 11933;11963;12002;12042;12084;12126;12135 78.06 47.424 1 455750 5720 7596 3618 3622 7241;7242;7243;7244;7245;7246;7247 7243 0.03189110643438653 ELPSSLSFPR 10 Unmodified _ELPSSLSFPR_ 0 0 0 ENST00000591625.5_3_17:76993904-77001537:-|nuORF;ENST00000592033.5_1_17:76993706-77001537:-|nuORF;ENST00000592887.1_1_17:76993904-77002146:-|nuORF;ENST00000588075.5_3_17:76993904-76996331:-|nuORF;ENST00000588611.5_1_17:76993706-77001537:-|nuORF ENST00000591625.5_3_17:76993904-77001537:-|nuORF ENST00000591625.5_3_17:76993904-77001537:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 566.8034057617188 2 566.803488 1131.59242 0.33912 0.00019221 -0.24176 -0.00013703 0.097356 5.5182E-05 566.8032592234075 55.904 0.96675 59.459 59.012 59.979 3.5554 175 75 3 0 0 0 0.16699 7 11882 11801;11841;11882;11925;11958;12000;12003 87.258 56.622 1 551350 5721 7596 3618 3622 7248;7249;7250;7251;7252;7253;7254 7250 0.03189110643438653 ELPSSLSFPR 10 Unmodified _ELPSSLSFPR_ 0 0 0 ENST00000591625.5_3_17:76993904-77001537:-|nuORF;ENST00000592033.5_1_17:76993706-77001537:-|nuORF;ENST00000592887.1_1_17:76993904-77002146:-|nuORF;ENST00000588075.5_3_17:76993904-76996331:-|nuORF;ENST00000588611.5_1_17:76993706-77001537:-|nuORF ENST00000591625.5_3_17:76993904-77001537:-|nuORF ENST00000591625.5_3_17:76993904-77001537:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 566.803488 1131.59242 0.60674 0.0003439 -0.51008 -0.00028912 0.09666 5.4787E-05 566.8031073171392 55.986 0.86533 59.519 59.075 59.94 3.5333 0.0061845 -0.00012818 NaN 78.06 157 63 3 NaN NaN NaN NaN 0 NaN NaN 0 544930 5722 7596 3618 3622 0.03189110643438653 ELPVLRSYY 9 Unmodified _ELPVLRSYY_ 0 0 0 REV__ENSG00000101680|ENST00000389658|LAMA1 REV__ENSG00000101680|ENST00000389658|LAMA1 MSMS UPN47_class_I_Rep_1 2 570.2908935546875 2 570.308406 1138.60226 NaN NaN NaN NaN NaN NaN NaN 73.021 1 76.401 75.901 76.901 3.3799 0 0 0 0.35339 1 17905 17905 7.9102 3.5809 1 + 5723 18171 3619 3623 7255 7255 0.03850298648808348 ELQEKKTI 8 Unmodified _ELQEKKTI_ 0 0 0 REV__ENSG00000171595|ENST00000311014|DNAI2 REV__ENSG00000171595|ENST00000311014|DNAI2 MULTI-MSMS UPN47_class_I_Rep_1 2 494.7869873046875 2 494.787307 987.560061 -0.33407 -0.00016529 0.11463 5.6719E-05 -0.21944 -0.00010858 494.7873531316533 17.806 1.0785 21.356 20.962 22.041 3.5504 215 129 2 0 0 0 0.82752 1 1420 1420 7.2892 0 1 108270 + 5724 20413 3620 3624 7256 7256 0.06578323240444206 ELQKFFVF 8 Unmodified _ELQKFFVF_ 0 0 0 REV__L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|106|3|anti-sense REV__L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|106|3|anti-sense MSMS UPN46_class_I_Rep_3 1 529.2879028320312 2 529.289485 1056.56442 NaN NaN NaN NaN NaN NaN NaN 67.236 1 67.236 66.736 67.736 0 0 0 0 0.40738 1 15294 15294 0.79363 0 1 + 5725 27270 3621 3625 7257 7257 0.03839832453991221 ELQKKQEL 8 Unmodified _ELQKKQEL_ 0 0 0 ENST00000466803.1_1_1:60330814-60338634:+|nuORF;nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1 ENST00000466803.1_1_1:60330814-60338634:+|nuORF ENST00000466803.1_1_1:60330814-60338634:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 508.29290771484375 2 508.292756 1014.57096 0.078041 3.9667E-05 -0.3005 -0.00015274 -0.22245 -0.00011307 508.29252156704774 45.758 0.94393 49.002 48.651 49.595 3.2441 95 55 2 0 0 0 0.82752 1 9819 9819 6.2058 0 1 187090 5726 2861 3622 3626 7258 7258 0.06425725614712974 ELQRQLQPH 9 Unmodified _ELQRQLQPH_ 0 0 0 ENST00000262525.5_1_16:30794287-30794599:-|nuORF ENST00000262525.5_1_16:30794287-30794599:-|nuORF ENST00000262525.5_1_16:30794287-30794599:-|nuORF MSMS UPN47_class_I_Rep_2 3 574.8115844726562 2 574.812179 1147.60981 NaN NaN NaN NaN NaN NaN NaN 45.082 1 48.438 47.938 48.938 3.3556 0 0 0 0.37891 1 9465 9465 5.7319 1.203 1 5727 5972 3623 3627 7259 7259 0.04190450969099402 ELQSGFNAY 9 Unmodified _ELQSGFNAY_ 0 0 0 REV__THE1A-int_dup305|chr3:111582892-111584470:-|1.812609104502482|0.0904960761083711|4.32|147.0|84|3|anti-sense REV__THE1A-int_dup305|chr3:111582892-111584470:-|1.812609104502482|0.0904960761083711|4.32|147.0|84|3|anti-sense MSMS UPN47_class_I_Rep_1 2 514.73876953125 2 514.737814 1027.46108 NaN NaN NaN NaN NaN NaN NaN 64.61 1 67.965 67.465 68.465 3.3557 0 0 0 0.36505 1 15359 15359 7.2892 1.0834 1 + 5728 32213 3624 3628 7260 7260 -0.051556997244460945 ELQSLWQI 8 Unmodified _ELQSLWQI_ 0 0 0 L1M1_dup6539|chrY:13277323-13279254:+|1.0502352957658987|0.0939876640404154|3.48|85.0|95|2|anti-sense L1M1_dup6539|chrY:13277323-13279254:+|1.0502352957658987|0.0939876640404154|3.48|85.0|95|2|anti-sense L1M1_dup6539|chrY:13277323-13279254:+|1.0502352957658987|0.0939876640404154|3.48|85.0|95|2|anti-sense MSMS UPN47_class_I_Rep_1 2 508.77423095703125 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 80.424 1 83.889 83.389 84.389 3.465 0 0 0 0.40157 1 20037 20037 7.2892 0 1 5729 8602 3625 3629 7261 7261 0.026700540689716945 ELREKLLKV 9 Unmodified _ELREKLLKV_ 0 0 0 REV__ENST00000411858.1_1_7:6854458-6863725:-|nuORF REV__ENST00000411858.1_1_7:6854458-6863725:-|nuORF MSMS UPN48_class_I_Rep_3 7 564.3587036132812 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 72.688 1 76.225 75.725 76.725 3.5373 0 0 0 0.40098 1 16959 16959 0.45834 0 1 + 5730 18756 3626 3630 7262 7262 0.14910839845219925 ELRFISRALI 10 Unmodified _ELRFISRALI_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|143|1|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|143|1|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|143|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 406.91845703125 3 406.583674 1216.72919 0.096576 3.9266E-05 0.76355 0.00031045 0.86013 0.00034971 406.5839954278245 103.32 0.039467 107.06 107.03 107.07 3.7434 7 5 2 0 0 0 0.56317 1 24405 24405 1.5923 0 1 5634600 5731 9334 3627 3631 7263 7263 0.12949644593822995 ELRFISRALI 10 Unmodified _ELRFISRALI_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|143|1|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|143|1|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|143|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 406.583674 1216.72919 -0.61138 -0.00024858 0.97797 0.00039763 0.36659 0.00014905 406.58417299144804 103.69 0.03933 107.21 107.19 107.23 3.5205 0.07393 9.7727E-05 NaN 1.5923 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2260300 5732 9334 3627 3631 0.12949644593822995 ELRLVQTSMT 10 Unmodified _ELRLVQTSMT_ 0 0 0 ENST00000433351.6_1_2:70503901-70503958:+|nuORF ENST00000433351.6_1_2:70503901-70503958:+|nuORF ENST00000433351.6_1_2:70503901-70503958:+|nuORF MSMS UPN47_class_I_Rep_1 2 589.3173217773438 2 589.315906 1176.61726 NaN NaN NaN NaN NaN NaN NaN 60.716 1 64.098 63.598 64.598 3.3815 0 0 0 0.53105 1 14188 14188 2.7352 0.89096 1 5733 6739 3628 3632 7264 7264 0.03601422454494241 ELRLVYTQLL 10 Unmodified _ELRLVYTQLL_ 0 0 0 REV__nc|ENSG00000187049|Q9P0N5-2|TMEM216 REV__nc|ENSG00000187049|Q9P0N5-2|TMEM216 MULTI-MSMS UPN47_class_I_Rep_2 3 624.8750610351562 2 624.371538 1246.72852 0.63459 0.00039622 1.1177 0.00069786 1.7523 0.0010941 624.3720584902031 98.87 0.14362 102.36 102.31 102.45 3.4897 38 21 2 0 0 0 0.56118 2 24231 24231;24249 2.9952 0 1 667730 + 5734 20917 3629 3633 7265;7266 7265 0.11502805154077578 ELRRAAQRL 9 Unmodified _ELRRAAQRL_ 0 0 0 REV__ENST00000472677.1_1_22:50636123-50636456:+|nuORF REV__ENST00000472677.1_1_22:50636123-50636456:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 556.836181640625 2 556.835988 1111.65742 0.048447 2.6977E-05 -0.68036 -0.00037885 -0.63191 -0.00035187 556.8356931816512 13.346 0.27942 16.734 16.629 16.908 3.388 44 33 2 0 0 0 0.46869 1 298 298 3.9444 0 1 37248 + 5735 20374 3630 3634 7267 7267 0.1060614995992637 ELRRELSHVR 10 Unmodified _ELRRELSHVR_ 0 0 0 REV__nc|ENSG00000100242|Q9UH99-3|SUN2 REV__nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN48_class_I_Rep_3 7 647.8702392578125 2 647.87056 1293.72657 NaN NaN NaN NaN NaN NaN NaN 66.097 1 69.605 69.105 70.105 3.5077 0 0 0 0.53105 1 14988 14988 1.4819 0 1 + 5736 18099 3631 3635 7268 7268 0.09145189188825498 ELRSYLKCS 9 Unmodified _ELRSYLKCS_ 0 0 0 L1MEi_dup4568|chr16:74466520-74467217:+|1.3650594024620302|0.4086941190963816|1.74|151.0|14|2|sense L1MEi_dup4568|chr16:74466520-74467217:+|1.3650594024620302|0.4086941190963816|1.74|151.0|14|2|sense L1MEi_dup4568|chr16:74466520-74467217:+|1.3650594024620302|0.4086941190963816|1.74|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 549.7952270507812 2 549.784241 1097.55393 NaN NaN NaN NaN NaN NaN NaN 59.323 1 62.488 61.988 62.988 3.1651 0 0 0 0.32573 1 13852 13852 9.3831 1.2276 1 5737 13457 3632 3636 7269 7269 0.009054817372543766 ELSFYCQYR 9 Unmodified _ELSFYCQYR_ 0 0 0 REV__L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|74|2|sense REV__L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|74|2|sense MSMS UPN46_class_I_Rep_3 1 604.6869506835938 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 115.89 1 115.89 115.39 116.39 0 0 0 0 0.39518 1 28671 28671 1.8442 0.36234 1 + 5738 25480 3633 3637 7270 7270 -0.062271086424289024 ELSGRRDR 8 Unmodified _ELSGRRDR_ 0 0 0 REV__nc|ENSG00000162775|Q96T37-4|RBM15 REV__nc|ENSG00000162775|Q96T37-4|RBM15 MSMS UPN48_class_I_Rep_3 7 494.76983642578125 2 494.767771 987.52099 NaN NaN NaN NaN NaN NaN NaN 41.255 1 44.901 44.401 45.401 3.6458 0 0 0 0.40292 1 7432 7432 6.7232 1.4925 1 + 5739 19941 3634 3638 7271 7271 0.026730357294241003 ELSKKKPL 8 Unmodified _ELSKKKPL_ 0 0 0 REV__AluSx_dup96501|chr17:19111856-19112129:+|1.2850841748492872|0.1610720086058201|3.0|149.0|6|2|sense REV__AluSx_dup96501|chr17:19111856-19112129:+|1.2850841748492872|0.1610720086058201|3.0|149.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 471.8026123046875 2 471.80276 941.590967 NaN NaN NaN NaN NaN NaN NaN 30.931 1 34.242 33.742 34.742 3.3116 0 0 0 0.40472 1 5205 5205 4.3292 1.7518 1 + 5740 17161 3635 3639 7272 7272 0.11783521345330428 ELSKPPVI 8 Unmodified _ELSKPPVI_ 0 0 0 REV__ENSG00000082438|ENST00000652658|COBLL1 REV__ENSG00000082438|ENST00000652658|COBLL1 MSMS UPN48_class_I_Rep_2 6 441.76885986328125 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 60.784 1 64.263 63.763 64.763 3.4785 0 0 0 0.40625 1 13450 13450 2.3027 0 1 + 5741 17922 3636 3640 7273 7273 0.07671857045625075 ELSLKLPTL 9 Unmodified _ELSLKLPTL_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS UPN47_class_I_Rep_2 3 507.3154602050781 2 507.3157 1012.61685 0.12196 6.1873E-05 1.1882 0.00060278 1.3101 0.00066465 507.8178825374978 63.879 0.25052 67.134 66.989 67.239 3.2556 51 21 3 0 0 0 0.26468 1 15181 15181 16.149 3.1066 1 136430 + 5742 19931 3637 3641 7274 7274 0.11104370796954299 ELSLKLPTL 9 Unmodified _ELSLKLPTL_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 507.3157 1012.61685 0.2129 0.00010801 0.60005 0.00030442 0.81296 0.00041243 507.3155104635225 63.647 0.33283 67.002 66.949 67.282 3.3557 -0.065924 -0.00027902 NaN 16.149 50 29 3 NaN NaN NaN NaN 0 NaN NaN 0 101470 + 5743 19931 3637 3641 0.11104370796954299 ELSLKLPTL 9 Unmodified _ELSLKLPTL_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 507.3157 1012.61685 0.12196 6.1873E-05 1.1882 0.00060278 1.3101 0.00066465 507.8178825374978 63.879 0.25052 67.134 66.989 67.239 3.2556 0.065924 0.00031772 NaN 16.149 51 21 3 NaN NaN NaN NaN 0 NaN NaN 0 136430 + 5744 19931 3637 3641 0.11104370796954299 ELSRPWLSVEG 11 Unmodified _ELSRPWLSVEG_ 0 0 0 L1MB4_dup3268|chr7:30266144-30267291:-|4.374143178767063|0.0779769645896567|5.81|151.0|10|1|sense L1MB4_dup3268|chr7:30266144-30267291:-|4.374143178767063|0.0779769645896567|5.81|151.0|10|1|sense L1MB4_dup3268|chr7:30266144-30267291:-|4.374143178767063|0.0779769645896567|5.81|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 636.832275390625 2 636.832777 1271.651 NaN NaN NaN NaN NaN NaN NaN 51.427 1 55.095 54.595 55.595 3.6679 0 0 0 0.38417 1 10600 10600 5.7834 1.2546 1 5745 10500 3638 3642 7275 7275 0.02604167217896247 ELSSHDDIL 9 Unmodified _ELSSHDDIL_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MSMS UPN48_class_I_Rep_1 5 514.7506713867188 2 514.748379 1027.4822 NaN NaN NaN NaN NaN NaN NaN 79.579 1 83.127 82.627 83.627 3.5487 0 0 0 0.38639 1 19002 19002 3.9444 0 1 + 5746 19522 3639 3643 7276 7276 -0.030437344156098334 ELSSLYILY 9 Unmodified _ELSSLYILY_ 0 0 0 L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|315|3|anti-sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|315|3|anti-sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|315|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 550.7979125976562 2 550.79734 1099.58013 0.39875 0.00021963 0.054773 3.0169E-05 0.45352 0.0002498 550.7973432058244 71.551 0.62163 74.927 74.613 75.235 3.3751 58 47 2 0 0 0 0.12281 1 17487 17487 4.3292 0 1 75659 5747 8681 3640 3644 7277 7277 0.03432074180386735 ELSVCSRVLL 10 Unmodified _ELSVCSRVLL_ 0 0 0 REV__L1PA3_dup5937|chr9:68275327-68281363:-|2.150738918218152|0.3667779995092458|2.55|151.0|280|2|anti-sense REV__L1PA3_dup5937|chr9:68275327-68281363:-|2.150738918218152|0.3667779995092458|2.55|151.0|280|2|anti-sense MSMS UPN48_class_I_Rep_3 7 559.8155517578125 2 559.815541 1117.61653 NaN NaN NaN NaN NaN NaN NaN 59.435 1 62.958 62.458 63.458 3.5231 0 0 0 0.53105 1 12971 12971 1.4819 0 1 + 5748 29547 3641 3645 7278 7278 0.06242627805454504 ELSYMLSKF 9 Unmodified _ELSYMLSKF_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|2|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|2|intron MSMS UPN48_class_I_Rep_1 5 559.2854614257812 2 559.283543 1116.55253 NaN NaN NaN NaN NaN NaN NaN 83.694 1 87.281 86.781 87.781 3.5871 0 0 0 0.38478 1 20022 20022 4.3292 0.38484 1 + 5749 19041 3642 3646 7279 7279 -0.0010815235148129432 ELTFFDADR 9 Unmodified _ELTFFDADR_ 0 0 0 nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50 nc|ENSG00000146755|Q86XT4-2|TRIM50 nc|ENSG00000146755|Q86XT4-2|TRIM50 MSMS UPN47_class_I_Rep_2 3 557.2642211914062 2 557.264196 1112.51384 NaN NaN NaN NaN NaN NaN NaN 60.808 1 64.074 63.574 64.574 3.2654 0 0 0 0.39518 1 14252 14252 1.8442 0 1 5750 3443 3643 3647 7280 7280 -0.03791741661666492 ELTHNSEY 8 Unmodified _ELTHNSEY_ 0 0 0 MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|40|2|sense MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|40|2|sense MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|40|2|sense MSMS UPN46_class_I_Rep_3 1 496.2960510253906 2 496.719621 991.42469 NaN NaN NaN NaN NaN NaN NaN 38.121 1 38.121 37.621 38.621 0 0 0 0 0.40581 1 7232 7232 2.8892 0 1 5751 16074 3644 3648 7281 7281 -0.07136576621178392 ELTKRRLLKRV 11 Unmodified _ELTKRRLLKRV_ 0 0 0 REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 MSMS UPN48_class_I_Rep_3 7 471.3138427734375 3 471.312177 1410.9147 NaN NaN NaN NaN NaN NaN NaN 22.596 1 26.347 25.847 26.847 3.7507 0 0 0 0.38417 1 2331 2331 0.45452 0 1 + 5752 17991 3645 3649 7282 7282 0.2256804711323639 ELTLNYRGSD 10 Unmodified _ELTLNYRGSD_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN47_class_I_Rep_3 4 584.2880859375 2 584.28566 1166.55677 NaN NaN NaN NaN NaN NaN NaN 59.021 1 62.187 61.687 62.687 3.1658 0 0 0 0.53105 1 13759 13759 5.2969 0.76802 1 + 5753 19771 3646 3650 7283 7283 -0.019849716042244836 ELTLPFVKLKQ 11 Unmodified _ELTLPFVKLKQ_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|39|2|sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|39|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 439.9093017578125 3 439.270984 1314.79112 0.053444 2.3476E-05 0.71503 0.00031409 0.76847 0.00033757 439.271228495281 37.51 0.4194 41.173 41.017 41.436 3.663 63 43 2 0 0 0 22.551 1 6406 6406 1.2148 0.4383 1 96677 + 5754 29478 3647 3651 7284 7284 0.14631951222258976 ELTMEEFLQ 9 Unmodified _ELTMEEFLQ_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43437816-43458370:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS UPN47_class_I_Rep_2 3 570.7693481445312 2 570.26809 1138.52163 0.39023 0.00022254 -0.12723 -7.2554E-05 0.263 0.00014998 570.2680836550204 68.119 0.53017 71.389 71.171 71.701 3.2696 95 43 3 0 0 0 0.42249 1 16467 16467 6.7232 0.51738 1 159020 5755 3616 3648 3652 7285 7285 -0.042093504564036266 ELTMEEFLQ 9 Unmodified _ELTMEEFLQ_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43437816-43458370:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS UPN47_class_I_Rep_2 3 570.26904296875 2 570.26809 1138.52163 0.43682 0.0002491 -2.4305 -0.0013861 -1.9937 -0.0011369 570.2669682241028 73.144 0.59716 76.441 76.12 76.717 3.2971 58 47 2 0 0 0 0.35081 1 17941 17941 10.824 2.9138 1 51699 5756 3616 3648 3652 7286 7286 -0.042093504564036266 ELTPQRIDNS 10 Unmodified _ELTPQRIDNS_ 0 0 0 REV__HERVL-int_dup1245|chr9:5738653-5740418:-|1.0882405695695678|0.2779207069987125|1.97|151.0|78|1|anti-sense REV__HERVL-int_dup1245|chr9:5738653-5740418:-|1.0882405695695678|0.2779207069987125|1.97|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 586.7973022460938 2 586.798934 1171.58332 NaN NaN NaN NaN NaN NaN NaN 93.684 1 97.42 96.92 97.92 3.736 0 0 0 0.53105 1 23295 23295 1.3295 0 1 + 5757 23851 3649 3653 7287 7287 0.004387172871020084 ELTRLLQLYV 10 Unmodified _ELTRLLQLYV_ 0 0 0 REV__ENST00000306336.5_2_2:85835478-85835544:-|nuORF REV__ENST00000306336.5_2_2:85835478-85835544:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 624.37255859375 2 624.371538 1246.72852 0.67676 0.00042255 1.3395 0.00083632 2.0162 0.0012589 624.3721230516671 102.78 0.11316 102.78 102.69 102.8 0 19 13 2 0 0 0 0.56354 1 25071 25071 1.3295 0 1 180770 + 5758 21688 3650 3654 7288 7288 0.11502805154077578 ELVEDWTKD 9 Unmodified _ELVEDWTKD_ 0 0 0 REV__ENSG00000187510|ENST00000344636|PLEKHG7 REV__ENSG00000187510|ENST00000344636|PLEKHG7 MSMS UPN47_class_I_Rep_2 3 567.7694091796875 2 567.769311 1133.52407 NaN NaN NaN NaN NaN NaN NaN 48.936 1 52.283 51.783 52.783 3.3465 0 0 0 0.38784 1 10624 10624 3.5965 0.31518 1 + 5759 20928 3651 3655 7289 7289 -0.03735178727083621 ELVEHIISF 9 Unmodified _ELVEHIISF_ 0 0 0 ENST00000474649.1_1_7:100184248-100189648:+|nuORF;nc|ENSG00000106336|O75426-2|FBXO24;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24 ENST00000474649.1_1_7:100184248-100189648:+|nuORF ENST00000474649.1_1_7:100184248-100189648:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 544.2963256835938 2 543.795132 1085.57571 0.43941 0.00023895 -0.092754 -5.0439E-05 0.34665 0.00018851 543.7950713536302 53.391 0.70757 56.911 56.571 57.279 3.5192 84 50 2 0 0 0 0.33654 2 11256 11256;11311 11.64 2.2572 1 318870 5760 1782 3652 3656 7290;7291 7290 0.03634609757477847 ELVEHIISF 9 Unmodified _ELVEHIISF_ 0 0 0 ENST00000474649.1_1_7:100184248-100189648:+|nuORF;nc|ENSG00000106336|O75426-2|FBXO24;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24 ENST00000474649.1_1_7:100184248-100189648:+|nuORF ENST00000474649.1_1_7:100184248-100189648:+|nuORF MSMS UPN48_class_I_Rep_3 7 544.236572265625 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 53.78 1 57.364 56.864 57.864 3.5836 0 0 0 0.38478 1 11242 11242 4.3292 0 1 5761 1782 3652 3656 7292 7292 0.03634609757477847 ELVHSPTNCV 10 Unmodified _ELVHSPTNCV_ 0 0 0 L1PA2_dup4444|chr15:92136973-92140869:-|1.1762635312578065|0.0731728251851758|4.01|151.0|151|2|anti-sense L1PA2_dup4444|chr15:92136973-92140869:-|1.1762635312578065|0.0731728251851758|4.01|151.0|151|2|anti-sense L1PA2_dup4444|chr15:92136973-92140869:-|1.1762635312578065|0.0731728251851758|4.01|151.0|151|2|anti-sense MSMS UPN47_class_I_Rep_1 2 549.78271484375 2 549.766049 1097.51754 NaN NaN NaN NaN NaN NaN NaN 49.606 1 53.266 52.766 53.766 3.6592 0 0 0 0.53105 1 10805 10805 13.906 2.2658 1 5762 14213 3653 3657 7293 7293 -0.02731395159457861 ELVKKQEL 8 Unmodified _ELVKKQEL_ 0 0 0 ENSG00000232653|ENST00000448387|GOLGA8N;ENSG00000206127|ENST00000509311|GOLGA8O;ENSG00000188626|ENST00000563027|GOLGA8M;ENSG00000178115|ENST00000562783|GOLGA8Q;ENSG00000261739|ENST00000562295|GOLGA8S ENSG00000232653|ENST00000448387|GOLGA8N ENSG00000232653|ENST00000448387|GOLGA8N MULTI-MSMS UPN47_class_I_Rep_3 4 493.7976379394531 2 493.797675 985.580796 -0.50321 -0.00024849 0.81475 0.00040232 0.31153 0.00015383 493.7980996527671 24.246 0.49201 27.597 27.446 27.938 3.3509 52 39 2 0 0 0 0.82752 1 3227 3227 3.5965 0 1 64224 5763 4812 3654 3658 7294 7294 0.08742913620108084 ELVNHHFA 8 Unmodified _ELVNHHFA_ 0 0 0 L1MC4_dup8995|chr6:38121513-38122135:-|1.2172491072372835|0.0307978575697007|5.3|151.0|10|2|sense L1MC4_dup8995|chr6:38121513-38122135:-|1.2172491072372835|0.0307978575697007|5.3|151.0|10|2|sense L1MC4_dup8995|chr6:38121513-38122135:-|1.2172491072372835|0.0307978575697007|5.3|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 483.7439880371094 2 483.743234 965.471915 0.12784 6.184E-05 0.33019 0.00015973 0.45803 0.00022157 483.74333349964894 49.592 0.6031 53.221 52.923 53.526 3.6291 52 38 2 0 0 0 0.82752 1 10021 10021 8.5933 0 1 129800 5764 11536 3655 3659 7295 7295 -0.012202525595284897 ELVPALGHKR 10 Unmodified _ELVPALGHKR_ 0 0 0 REV__HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|43|1|sense REV__HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|43|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3173217773438 2 560.33529 1118.65603 0.43702 0.00024488 -0.19608 -0.00010987 0.24094 0.00013501 560.3352161873804 41.04 0.53256 44.791 44.477 45.009 3.7508 67 52 2 0 0 0 0.56333 1 7424 7424 1.4819 1.4819 1 134280 + 5765 23940 3656 3660 7296 7296 0.10144515871184012 ELVPFLLQLFH 11 Unmodified _ELVPFLLQLFH_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|134|3|sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|134|3|sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|134|3|sense MSMS UPN48_class_I_Rep_2 6 452.59747314453125 3 452.595579 1354.76491 NaN NaN NaN NaN NaN NaN NaN 59.07 1 62.569 62.069 63.069 3.4987 0 0 0 0.38417 1 12924 12924 0.45452 0.046251 1 5766 14548 3657 3661 7297 7297 0.1017168205080452 ELVQGTELP 9 Unmodified _ELVQGTELP_ 0 0 0 ENST00000498020.1_1_6:32908580-32908760:-|nuORF ENST00000498020.1_1_6:32908580-32908760:-|nuORF ENST00000498020.1_1_6:32908580-32908760:-|nuORF MSMS UPN46_class_I_Rep_3 1 493.4224853515625 2 493.263665 984.512776 NaN NaN NaN NaN NaN NaN NaN 69.193 1 69.193 68.693 69.693 0 0 0 0 0.31276 1 15843 15843 10.074 2.7847 1 5767 7113 3658 3662 7298 7298 0.01990043969431099 ELVSWVILY 9 Unmodified _ELVSWVILY_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|353|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|353|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 560.8164672851562 2 561.3157 1120.61685 0.36602 0.00020545 2.6677 0.0014974 3.0337 0.0017029 561.3176163341351 65.156 0.3299 68.512 68.352 68.682 3.3557 30 22 2 0 0 0 0.11425 1 15543 15543 12.532 3.9383 1 51712 + 5768 30693 3659 3663 7299 7299 0.06136370796980373 ELVSWVILY 9 Unmodified _ELVSWVILY_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|353|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|353|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 561.3157 1120.61685 0.52744 0.00029606 4.2174 0.0023673 4.7449 0.0026634 561.3176303019262 64.696 0.052658 68.175 68.143 68.195 3.4792 -0.1687 0.0012462 NaN 12.532 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 57989 + 5769 30693 3659 3663 0.06136370796980373 ELVVAAPPAR 10 Unmodified _ELVVAAPPAR_ 0 0 0 ENSG00000116032|ENST00000234389|GRIN3B ENSG00000116032|ENST00000234389|GRIN3B ENSG00000116032|ENST00000234389|GRIN3B MSMS UPN47_class_I_Rep_3 4 511.8018493652344 2 511.803291 1021.59203 NaN NaN NaN NaN NaN NaN NaN 52.118 1 55.323 54.823 55.823 3.2055 0 0 0 0.53105 1 11656 11656 3.5965 0 1 5770 2156 3660 3664 7300 7300 0.08209735714228827 ELVVMFLLS 9 Unmodified _ELVVMFLLS_ 0 0 0 L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|123|3|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|123|3|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_3 4 525.8011474609375 2 525.798829 1049.5831 NaN NaN NaN NaN NaN NaN NaN 60.776 1 63.941 63.441 64.441 3.1651 0 0 0 0.36505 1 14293 14293 7.2892 0 1 5771 10408 3661 3665 7301 7301 0.06029626033569002 ELWIELICY 9 Unmodified _ELWIELICY_ 0 0 0 REV__L1MA9_dup14830|chr17:76764159-76764998:-|1.5351965177856404|0.3831783933904298|2.0|151.0|27|3|sense REV__L1MA9_dup14830|chr17:76764159-76764998:-|1.5351965177856404|0.3831783933904298|2.0|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 591.29833984375 2 591.299193 1180.58383 -0.095577 -5.6514E-05 -0.19487 -0.00011522 -0.29044 -0.00017174 591.2990126287824 19.846 0.72747 23.458 23.137 23.865 3.6118 116 81 2 0 0 0 0.48846 1 1882 1882 1.8442 0.36234 1 62848 + 5772 25622 3662 3666 7302 7302 0.0007642068258064683 ELWIELICY 9 Unmodified _ELWIELICY_ 0 0 0 REV__L1MA9_dup14830|chr17:76764159-76764998:-|1.5351965177856404|0.3831783933904298|2.0|151.0|27|3|sense REV__L1MA9_dup14830|chr17:76764159-76764998:-|1.5351965177856404|0.3831783933904298|2.0|151.0|27|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 591.299193 1180.58383 0.047597 2.8144E-05 -1.9119 -0.0011305 -1.8643 -0.0011024 591.2983520983847 19.809 0.026392 23.205 23.191 23.217 3.3963 -0.12624 -0.0019935 NaN 1.8442 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 11876 + 5773 25622 3662 3666 0.0007642068258064683 ELWLCNNEL 9 Unmodified _ELWLCNNEL_ 0 0 0 REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.2687377929688 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 48.355 1 52.037 51.537 52.537 3.6819 0 0 0 0.37692 1 10424 10424 6.2058 0 1 + 5774 31585 3663 3667 7303 7303 -0.038665110166903105 ELWLCNNEL 9 Unmodified _ELWLCNNEL_ 0 0 0 REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.2684326171875 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 48.661 1 52.342 51.842 52.842 3.6819 0 0 0 0.37692 1 10517 10517 6.2058 0 1 + 5775 31585 3663 3667 7304 7304 -0.038665110166903105 ELWLCNNEL 9 Unmodified _ELWLCNNEL_ 0 0 0 REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.2689208984375 2 567.268424 1132.5223 0.39053 0.00022154 -0.53637 -0.00030426 -0.14584 -8.2728E-05 567.2679339720669 49.075 0.73073 52.422 51.885 52.616 3.3465 60 44 2 0 0 0 0.47493 1 10680 10680 3.2813 0.54611 1 109620 + 5776 31585 3663 3667 7305 7305 -0.038665110166903105 ELWLCNNEL 9 Unmodified _ELWLCNNEL_ 0 0 0 REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|89|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.2685546875 2 567.268424 1132.5223 0.43458 0.00024652 -0.73746 -0.00041834 -0.30287 -0.00017181 567.2678517013976 49.141 0.85259 52.376 51.825 52.677 3.2345 74 50 2 0 0 0 0.43153 1 10690 10690 6.2058 6.2058 1 89940 + 5777 31585 3663 3667 7306 7306 -0.038665110166903105 ELWLGHPHP 9 Unmodified _ELWLGHPHP_ 0 0 0 ENST00000493772.5_1_20:62372609-62373703:+|nuORF ENST00000493772.5_1_20:62372609-62373703:+|nuORF ENST00000493772.5_1_20:62372609-62373703:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 543.7830810546875 2 543.279983 1084.54541 0.24153 0.00013122 1.6666 0.00090544 1.9081 0.0010367 543.7824696870815 48.846 0.75587 52.509 52.095 52.851 3.6621 68 50 2 0 0 0 0.45688 1 10604 10604 4.756 1.1595 1 60733 5778 7083 3664 3668 7307 7307 0.006522958829464187 ELYEGREEP 9 Unmodified _ELYEGREEP_ 0 0 0 REV__ENST00000515664.5_1_4:175158565-175177261:-|nuORF REV__ENST00000515664.5_1_4:175158565-175177261:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 561.2597045898438 2 561.259111 1120.50367 0.4419 0.00024802 0.84385 0.00047362 1.2857 0.00072163 561.259324096018 69.032 0.69349 72.237 71.731 72.425 3.2044 78 55 3 0 0 0 0.49026 1 16841 16841 1.6526 1.6526 1 203100 + 5779 20034 3665 3669 7308 7308 -0.051763493868975274 ELYENGTY 8 Unmodified _ELYENGTY_ 0 0 0 REV__L1MA2_dup6607|chr15:58656047-58658991:-|11.816673501372266|0.1432605383065805|6.37|151.0|2|1|sense REV__L1MA2_dup6607|chr15:58656047-58658991:-|11.816673501372266|0.1432605383065805|6.37|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 494.73455810546875 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 59.794 1 63.192 62.692 63.692 3.3982 0 0 0 0.40364 1 13910 13910 5.7604 0.52976 1 + 5780 24930 3666 3670 7309 7309 -0.07567094852709033 ELYIHINPL 9 Unmodified _ELYIHINPL_ 0 0 0 REV__MLT1C_dup19103|chr21:34986466-34986897:+|8.912649700265245|0.0065346302253336|10.41|151.0|9|3|sense REV__MLT1C_dup19103|chr21:34986466-34986897:+|8.912649700265245|0.0065346302253336|10.41|151.0|9|3|sense MSMS UPN47_class_I_Rep_2 3 556.31640625 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 64.457 1 67.713 67.213 68.213 3.2556 0 0 0 0.39518 1 15357 15357 1.8442 0.19162 1 + 5781 31647 3667 3671 7310 7310 0.05646602511410492 ELYQYNVHE 9 Unmodified _ELYQYNVHE_ 0 0 0 REV__L1MD1_dup3188|chr8:47545369-47546708:-|1.0565248238586673|0.005158211008627|7.68|151.0|34|3|sense REV__L1MD1_dup3188|chr8:47545369-47546708:-|1.0565248238586673|0.005158211008627|7.68|151.0|34|3|sense MSMS UPN46_class_I_Rep_3 1 597.7733154296875 2 597.774928 1193.5353 NaN NaN NaN NaN NaN NaN NaN 57.42 1 57.42 56.92 57.92 0 0 0 0 0.39598 1 12580 12580 1.6526 0 1 + 5782 27319 3668 3672 7311 7311 -0.05372356632960873 ELYTYSWIK 9 Unmodified _ELYTYSWIK_ 0 0 0 REV__ENSG00000009694.13,TENM1,chrX,-,I31.1,124381295,124382669|24|7.96|2|intron REV__ENSG00000009694.13,TENM1,chrX,-,I31.1,124381295,124382669|24|7.96|2|intron MSMS UPN48_class_I_Rep_2 6 601.8084716796875 2 601.808239 1201.60193 NaN NaN NaN NaN NaN NaN NaN 75.617 1 79.218 78.718 79.718 3.6011 0 0 0 0.39518 1 17837 17837 1.8442 0 1 + 5783 17563 3669 3673 7312 7312 0.009188789289282795 EMDDLISLLTG 11 Unmodified _EMDDLISLLTG_ 0 0 0 nc|ENSG00000292277|Q9UJ98-2|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS UPN48_class_I_Rep_3 7 603.8023071289062 2 603.799754 1205.58495 NaN NaN NaN NaN NaN NaN NaN 34.597 1 38.269 37.769 38.769 3.6721 0 0 0 0.38417 1 5510 5510 2.9952 1.3426 1 5784 16858 3670 3674 7313 7313 -0.00961409739170449 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2425537109375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.31 1 21.31 20.81 21.81 0 0 0 0 0.40604 1 2363 2363 2.5775 0 1 + 5785 19622 3671 3675 7314 7314 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 487.87677001953125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.317 1 23.317 22.817 23.817 0 0 0 0 0.40604 1 2904 2904 2.5775 0 1 + 5786 19622 3671 3675 7315 7315 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.516 1 25.516 25.016 26.016 0 0 0 0 0.40604 1 3512 3512 2.5775 0 1 + 5787 19622 3671 3675 7316 7316 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.1927795410156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 73.969 1 73.969 73.469 74.469 0 0 0 0 0.40604 1 17156 17156 2.5775 0 1 + 5788 19622 3671 3675 7317 7317 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.1213684082031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 73.988 1 73.988 73.488 74.488 0 0 0 0 0.40604 1 17161 17161 2.5775 0 1 + 5789 19622 3671 3675 7318 7318 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.46 1 111.46 110.96 111.96 0 0 0 0 0.40604 1 27483 27483 2.5775 0 1 + 5790 19622 3671 3675 7319 7319 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.72 1 111.72 111.22 112.22 0 0 0 0 0.40604 1 27555 27555 2.5775 0 1 + 5791 19622 3671 3675 7320 7320 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112 1 112 111.5 112.5 0 0 0 0 0.40604 1 27639 27639 2.5775 0 1 + 5792 19622 3671 3675 7321 7321 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2431945800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.1 1 112.1 111.6 112.6 0 0 0 0 0.40604 1 27669 27669 2.5775 0 1 + 5793 19622 3671 3675 7322 7322 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.63 1 112.63 112.13 113.13 0 0 0 0 0.40604 1 27811 27811 2.5775 0 1 + 5794 19622 3671 3675 7323 7323 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2425537109375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.63 1 113.63 113.13 114.13 0 0 0 0 0.40604 1 28067 28067 2.5775 0 1 + 5795 19622 3671 3675 7324 7324 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2432861328125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.08 1 114.08 113.58 114.58 0 0 0 0 0.40604 1 28186 28186 2.5775 0 1 + 5796 19622 3671 3675 7325 7325 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2430725097656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.13 1 114.13 113.63 114.63 0 0 0 0 0.40604 1 28201 28201 2.5775 0 1 + 5797 19622 3671 3675 7326 7326 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.89 1 114.89 114.39 115.39 0 0 0 0 0.40604 1 28410 28410 2.5775 0 1 + 5798 19622 3671 3675 7327 7327 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.16 1 115.16 114.66 115.66 0 0 0 0 0.40604 1 28482 28482 2.5775 0 1 + 5799 19622 3671 3675 7328 7328 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2900695800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.51 1 115.51 115.01 116.01 0 0 0 0 0.40604 1 28570 28570 2.5775 0 1 + 5800 19622 3671 3675 7329 7329 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.83 1 115.83 115.33 116.33 0 0 0 0 0.40604 1 28654 28654 2.5775 0 1 + 5801 19622 3671 3675 7330 7330 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24456787109375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.85 1 115.85 115.35 116.35 0 0 0 0 0.40604 1 28661 28661 2.5775 0 1 + 5802 19622 3671 3675 7331 7331 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.47 1 116.47 115.97 116.97 0 0 0 0 0.40604 1 28833 28833 2.5775 0 1 + 5803 19622 3671 3675 7332 7332 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2906188964844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.68 1 116.68 116.18 117.18 0 0 0 0 0.40604 1 28894 28894 2.5775 0 1 + 5804 19622 3671 3675 7333 7333 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.61 1 117.61 117.11 118.11 0 0 0 0 0.40604 1 29161 29161 2.5775 0 1 + 5805 19622 3671 3675 7334 7334 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24273681640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.05 1 119.05 118.55 119.55 0 0 0 0 0.40604 1 29576 29576 2.5775 0 1 + 5806 19622 3671 3675 7335 7335 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.24371337890625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.26 1 119.26 118.76 119.76 0 0 0 0 0.40604 1 29635 29635 2.5775 0 1 + 5807 19622 3671 3675 7336 7336 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2435302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.43 1 119.43 118.93 119.93 0 0 0 0 0.40604 1 29685 29685 2.5775 0 1 + 5808 19622 3671 3675 7337 7337 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN46_class_I_Rep_3 1 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.83 1 119.83 119.33 120.33 0 0 0 0 0.40604 1 29801 29801 2.5775 0 1 + 5809 19622 3671 3675 7338 7338 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24200439453125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.617 1 20.139 19.639 20.639 3.5224 0 0 0 0.40604 1 1097 1097 2.5775 0 1 + 5810 19622 3671 3675 7339 7339 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24273681640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.751 1 20.273 19.773 20.773 3.5224 0 0 0 0.40604 1 1132 1132 2.5775 0 1 + 5811 19622 3671 3675 7340 7340 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.871 1 20.394 19.894 20.894 3.5224 0 0 0 0.40604 1 1162 1162 2.5775 0 1 + 5812 19622 3671 3675 7341 7341 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.555 1 22.136 21.636 22.636 3.5806 0 0 0 0.40604 1 1571 1571 2.5775 0 1 + 5813 19622 3671 3675 7342 7342 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24273681640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.734 1 24.378 23.878 24.878 3.6436 0 0 0 0.40604 1 2135 2135 2.5775 0 1 + 5814 19622 3671 3675 7343 7343 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.234 1 24.877 24.377 25.377 3.6436 0 0 0 0.40604 1 2273 2273 2.5775 0 1 + 5815 19622 3671 3675 7344 7344 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.314 1 25.989 25.489 26.489 3.6749 0 0 0 0.40604 1 2575 2575 2.5775 0 1 + 5816 19622 3671 3675 7345 7345 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2435302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.639 1 26.344 25.844 26.844 3.7042 0 0 0 0.40604 1 2666 2666 2.5775 0 1 + 5817 19622 3671 3675 7346 7346 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2427978515625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.548 1 28.278 27.778 28.778 3.7298 0 0 0 0.40604 1 3227 3227 2.5775 0 1 + 5818 19622 3671 3675 7347 7347 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.799 1 28.549 28.049 29.049 3.7495 0 0 0 0.40604 1 3303 3303 2.5775 0 1 + 5819 19622 3671 3675 7348 7348 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.867 1 29.63 29.13 30.13 3.7624 0 0 0 0.40604 1 3616 3616 2.5775 0 1 + 5820 19622 3671 3675 7349 7349 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.099 1 29.862 29.362 30.362 3.7624 0 0 0 0.40604 1 3683 3683 2.5775 0 1 + 5821 19622 3671 3675 7350 7350 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.286 1 30.048 29.548 30.548 3.7624 0 0 0 0.40604 1 3740 3740 2.5775 0 1 + 5822 19622 3671 3675 7351 7351 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2427062988281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.515 1 30.278 29.778 30.778 3.7624 0 0 0 0.40604 1 3804 3804 2.5775 0 1 + 5823 19622 3671 3675 7352 7352 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24346923828125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 36.971 1 40.64 40.14 41.14 3.6692 0 0 0 0.40604 1 6963 6963 2.5775 0 1 + 5824 19622 3671 3675 7353 7353 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2434997558594 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 37.13 1 40.799 40.299 41.299 3.6692 0 0 0 0.40604 1 7011 7011 2.5775 0 1 + 5825 19622 3671 3675 7354 7354 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 46.726 1 50.423 49.923 50.923 3.6972 0 0 0 0.40604 1 9938 9938 2.5775 0 1 + 5826 19622 3671 3675 7355 7355 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 110.99 1 114.57 114.07 115.07 3.5835 0 0 0 0.40604 1 27366 27366 2.5775 0 1 + 5827 19622 3671 3675 7356 7356 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2421569824219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.27 1 116.84 116.34 117.34 3.572 0 0 0 0.40604 1 27944 27944 2.5775 0 1 + 5828 19622 3671 3675 7357 7357 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.71 1 117.28 116.78 117.78 3.572 0 0 0 0.40604 1 28070 28070 2.5775 0 1 + 5829 19622 3671 3675 7358 7358 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.83 1 117.4 116.9 117.9 3.572 0 0 0 0.40604 1 28106 28106 2.5775 0 1 + 5830 19622 3671 3675 7359 7359 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.29 1 117.88 117.38 118.38 3.5809 0 0 0 0.40604 1 28237 28237 2.5775 0 1 + 5831 19622 3671 3675 7360 7360 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24407958984375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.75 1 118.33 117.83 118.83 3.5809 0 0 0 0.40604 1 28364 28364 2.5775 0 1 + 5832 19622 3671 3675 7361 7361 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.42 1 119.01 118.51 119.51 3.5943 0 0 0 0.40604 1 28556 28556 2.5775 0 1 + 5833 19622 3671 3675 7362 7362 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.87 1 119.46 118.96 119.96 3.5943 0 0 0 0.40604 1 28681 28681 2.5775 0 1 + 5834 19622 3671 3675 7363 7363 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.53 1 120.13 119.63 120.63 3.6036 0 0 0 0.40604 1 28861 28861 2.5775 0 1 + 5835 19622 3671 3675 7364 7364 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.03 1 121.63 121.13 122.13 3.6036 0 0 0 0.40604 1 29277 29277 2.5775 0 1 + 5836 19622 3671 3675 7365 7365 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2433776855469 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.47 1 122.07 121.57 122.57 3.6036 0 0 0 0.40604 1 29400 29400 2.5775 0 1 + 5837 19622 3671 3675 7366 7366 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.51 1 122.12 121.62 122.62 3.6036 0 0 0 0.40604 1 29412 29412 2.5775 0 1 + 5838 19622 3671 3675 7367 7367 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.67 1 122.27 121.77 122.77 3.6036 0 0 0 0.40604 1 29455 29455 2.5775 0 1 + 5839 19622 3671 3675 7368 7368 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.2435607910156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.62 1 123.22 122.72 123.72 3.6036 0 0 0 0.40604 1 29731 29731 2.5775 0 1 + 5840 19622 3671 3675 7369 7369 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_1 2 488.242431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.95 1 123.55 123.05 124.05 3.6036 0 0 0 0.40604 1 29828 29828 2.5775 0 1 + 5841 19622 3671 3675 7370 7370 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.798 1 20.185 19.685 20.685 3.3864 0 0 0 0.40604 1 1138 1138 2.5775 0 1 + 5842 19622 3671 3675 7371 7371 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.454 1 21.844 21.344 22.344 3.3898 0 0 0 0.40604 1 1561 1561 2.5775 0 1 + 5843 19622 3671 3675 7372 7372 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24371337890625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.656 1 23.053 22.553 23.553 3.3963 0 0 0 0.40604 1 1895 1895 2.5775 0 1 + 5844 19622 3671 3675 7373 7373 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2432861328125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.919 1 23.315 22.815 23.815 3.3963 0 0 0 0.40604 1 1971 1971 2.5775 0 1 + 5845 19622 3671 3675 7374 7374 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2426452636719 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.147 1 23.544 23.044 24.044 3.3963 0 0 0 0.40604 1 2038 2038 2.5775 0 1 + 5846 19622 3671 3675 7375 7375 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.997 1 24.404 23.904 24.904 3.4074 0 0 0 0.40604 1 2277 2277 2.5775 0 1 + 5847 19622 3671 3675 7376 7376 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.383 1 24.807 24.307 25.307 3.4241 0 0 0 0.40604 1 2380 2380 2.5775 0 1 + 5848 19622 3671 3675 7377 7377 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.555 1 26 25.5 26.5 3.4447 0 0 0 0.40604 1 2697 2697 2.5775 0 1 + 5849 19622 3671 3675 7378 7378 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.74 1 26.184 25.684 26.684 3.4447 0 0 0 0.40604 1 2748 2748 2.5775 0 1 + 5850 19622 3671 3675 7379 7379 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.194 1 26.639 26.139 27.139 3.4447 0 0 0 0.40604 1 2882 2882 2.5775 0 1 + 5851 19622 3671 3675 7380 7380 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.41 1 27.876 27.376 28.376 3.4655 0 0 0 0.40604 1 3229 3229 2.5775 0 1 + 5852 19622 3671 3675 7381 7381 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2432556152344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.888 1 28.371 27.871 28.871 3.483 0 0 0 0.40604 1 3372 3372 2.5775 0 1 + 5853 19622 3671 3675 7382 7382 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.232 1 28.715 28.215 29.215 3.483 0 0 0 0.40604 1 3474 3474 2.5775 0 1 + 5854 19622 3671 3675 7383 7383 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.241943359375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.637 1 31.136 30.636 31.636 3.4986 0 0 0 0.40604 1 4179 4179 2.5775 0 1 + 5855 19622 3671 3675 7384 7384 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.686 1 31.185 30.685 31.685 3.4986 0 0 0 0.40604 1 4193 4193 2.5775 0 1 + 5856 19622 3671 3675 7385 7385 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 39.157 1 42.536 42.036 43.036 3.3785 0 0 0 0.40604 1 7659 7659 2.5775 0 1 + 5857 19622 3671 3675 7386 7386 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2435302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 45.947 1 49.301 48.801 49.801 3.3534 0 0 0 0.40604 1 9730 9730 2.5775 0 1 + 5858 19622 3671 3675 7387 7387 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 46.104 1 49.457 48.957 49.957 3.3534 0 0 0 0.40604 1 9777 9777 2.5775 0 1 + 5859 19622 3671 3675 7388 7388 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2434997558594 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 48.216 1 51.565 51.065 52.065 3.3492 0 0 0 0.40604 1 10404 10404 2.5775 0 1 + 5860 19622 3671 3675 7389 7389 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24298095703125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.82 1 115.34 114.84 115.84 3.5226 0 0 0 0.40604 1 27229 27229 2.5775 0 1 + 5861 19622 3671 3675 7390 7390 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24334716796875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.63 1 116.15 115.65 116.65 3.5171 0 0 0 0.40604 1 27405 27405 2.5775 0 1 + 5862 19622 3671 3675 7391 7391 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.1 116.6 117.6 3.5109 0 0 0 0.40604 1 27632 27632 2.5775 0 1 + 5863 19622 3671 3675 7392 7392 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.97 1 117.48 116.98 117.98 3.5109 0 0 0 0.40604 1 27737 27737 2.5775 0 1 + 5864 19622 3671 3675 7393 7393 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2431945800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.49 1 117.99 117.49 118.49 3.5039 0 0 0 0.40604 1 27880 27880 2.5775 0 1 + 5865 19622 3671 3675 7394 7394 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24273681640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.82 1 119.31 118.81 119.81 3.4965 0 0 0 0.40604 1 28253 28253 2.5775 0 1 + 5866 19622 3671 3675 7395 7395 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2427062988281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.55 1 120.05 119.55 120.55 3.4965 0 0 0 0.40604 1 28458 28458 2.5775 0 1 + 5867 19622 3671 3675 7396 7396 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2424621582031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.5 1 120.99 120.49 121.49 3.4891 0 0 0 0.40604 1 28721 28721 2.5775 0 1 + 5868 19622 3671 3675 7397 7397 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.73 1 121.21 120.71 121.71 3.487 0 0 0 0.40604 1 28785 28785 2.5775 0 1 + 5869 19622 3671 3675 7398 7398 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.242431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.16 1 121.64 121.14 122.14 3.4822 0 0 0 0.40604 1 28902 28902 2.5775 0 1 + 5870 19622 3671 3675 7399 7399 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.38 1 121.86 121.36 122.36 3.4822 0 0 0 0.40604 1 28965 28965 2.5775 0 1 + 5871 19622 3671 3675 7400 7400 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_2 3 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.59 1 123.07 122.57 123.57 3.4793 0 0 0 0.40604 1 29302 29302 2.5775 0 1 + 5872 19622 3671 3675 7401 7401 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.323 1 19.685 19.185 20.185 3.3619 0 0 0 0.40604 1 998 998 2.5775 0 1 + 5873 19622 3671 3675 7402 7402 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.944 1 20.306 19.806 20.806 3.3619 0 0 0 0.40604 1 1149 1149 2.5775 0 1 + 5874 19622 3671 3675 7403 7403 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2424621582031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 17.102 1 20.46 19.96 20.96 3.3581 0 0 0 0.40604 1 1191 1191 2.5775 0 1 + 5875 19622 3671 3675 7404 7404 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24237060546875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 17.333 1 20.691 20.191 21.191 3.3581 0 0 0 0.40604 1 1252 1252 2.5775 0 1 + 5876 19622 3671 3675 7405 7405 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.221 1 21.576 21.076 22.076 3.3545 0 0 0 0.40604 1 1476 1476 2.5775 0 1 + 5877 19622 3671 3675 7406 7406 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.487 1 21.842 21.342 22.342 3.3545 0 0 0 0.40604 1 1548 1548 2.5775 0 1 + 5878 19622 3671 3675 7407 7407 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.673 1 22.027 21.527 22.527 3.3545 0 0 0 0.40604 1 1599 1599 2.5775 0 1 + 5879 19622 3671 3675 7408 7408 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.868 1 22.222 21.722 22.722 3.3545 0 0 0 0.40604 1 1655 1655 2.5775 0 1 + 5880 19622 3671 3675 7409 7409 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.268 1 22.62 22.12 23.12 3.3514 0 0 0 0.40604 1 1768 1768 2.5775 0 1 + 5881 19622 3671 3675 7410 7410 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.718 1 23.07 22.57 23.57 3.3514 0 0 0 0.40604 1 1896 1896 2.5775 0 1 + 5882 19622 3671 3675 7411 7411 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2420959472656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.803 1 24.153 23.653 24.653 3.3496 0 0 0 0.40604 1 2215 2215 2.5775 0 1 + 5883 19622 3671 3675 7412 7412 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.394 1 24.743 24.243 25.243 3.3496 0 0 0 0.40604 1 2386 2386 2.5775 0 1 + 5884 19622 3671 3675 7413 7413 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.532 1 24.882 24.382 25.382 3.3496 0 0 0 0.40604 1 2425 2425 2.5775 0 1 + 5885 19622 3671 3675 7414 7414 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.973 1 25.323 24.823 25.823 3.3496 0 0 0 0.40604 1 2551 2551 2.5775 0 1 + 5886 19622 3671 3675 7415 7415 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.223 1 25.573 25.073 26.073 3.3496 0 0 0 0.40604 1 2622 2622 2.5775 0 1 + 5887 19622 3671 3675 7416 7416 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2436828613281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.257 1 28.608 28.108 29.108 3.3509 0 0 0 0.40604 1 3521 3521 2.5775 0 1 + 5888 19622 3671 3675 7417 7417 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.943 1 30.285 29.785 30.785 3.3422 0 0 0 0.40604 1 4018 4018 2.5775 0 1 + 5889 19622 3671 3675 7418 7418 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2422790527344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 34.192 1 37.467 36.967 37.967 3.2748 0 0 0 0.40604 1 6188 6188 2.5775 0 1 + 5890 19622 3671 3675 7419 7419 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 34.565 1 37.829 37.329 38.329 3.2639 0 0 0 0.40604 1 6298 6298 2.5775 0 1 + 5891 19622 3671 3675 7420 7420 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111 1 114.53 114.03 115.03 3.529 0 0 0 0.40604 1 27233 27233 2.5775 0 1 + 5892 19622 3671 3675 7421 7421 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.243408203125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.58 1 115.1 114.6 115.6 3.5207 0 0 0 0.40604 1 27393 27393 2.5775 0 1 + 5893 19622 3671 3675 7422 7422 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2426452636719 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.05 1 116.56 116.06 117.06 3.5098 0 0 0 0.40604 1 27721 27721 2.5775 0 1 + 5894 19622 3671 3675 7423 7423 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.18 1 116.69 116.19 117.19 3.5098 0 0 0 0.40604 1 27756 27756 2.5775 0 1 + 5895 19622 3671 3675 7424 7424 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24212646484375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.58 1 117.08 116.58 117.58 3.4963 0 0 0 0.40604 1 27865 27865 2.5775 0 1 + 5896 19622 3671 3675 7425 7425 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2430725097656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.75 1 117.24 116.74 117.74 3.4963 0 0 0 0.40604 1 27908 27908 2.5775 0 1 + 5897 19622 3671 3675 7426 7426 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2426452636719 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.92 1 117.42 116.92 117.92 3.4963 0 0 0 0.40604 1 27959 27959 2.5775 0 1 + 5898 19622 3671 3675 7427 7427 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.39 1 117.89 117.39 118.39 3.4963 0 0 0 0.40604 1 28090 28090 2.5775 0 1 + 5899 19622 3671 3675 7428 7428 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24249267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.78 1 120.22 119.72 120.72 3.4425 0 0 0 0.40604 1 28745 28745 2.5775 0 1 + 5900 19622 3671 3675 7429 7429 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.28 1 120.73 120.23 121.23 3.4425 0 0 0 0.40604 1 28888 28888 2.5775 0 1 + 5901 19622 3671 3675 7430 7430 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.55 1 121 120.5 121.5 3.4425 0 0 0 0.40604 1 28966 28966 2.5775 0 1 + 5902 19622 3671 3675 7431 7431 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.48 1 121.9 121.4 122.4 3.4238 0 0 0 0.40604 1 29221 29221 2.5775 0 1 + 5903 19622 3671 3675 7432 7432 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.71 1 122.14 121.64 122.64 3.4238 0 0 0 0.40604 1 29289 29289 2.5775 0 1 + 5904 19622 3671 3675 7433 7433 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.06 1 122.47 121.97 122.97 3.4157 0 0 0 0.40604 1 29391 29391 2.5775 0 1 + 5905 19622 3671 3675 7434 7434 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.24 1 122.65 122.15 123.15 3.4157 0 0 0 0.40604 1 29441 29441 2.5775 0 1 + 5906 19622 3671 3675 7435 7435 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.24298095703125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.44 1 122.86 122.36 123.36 3.4157 0 0 0 0.40604 1 29500 29500 2.5775 0 1 + 5907 19622 3671 3675 7436 7436 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.88 1 123.29 122.79 123.79 3.4157 0 0 0 0.40604 1 29621 29621 2.5775 0 1 + 5908 19622 3671 3675 7437 7437 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN47_class_I_Rep_3 4 488.2425537109375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.95 1 123.37 122.87 123.87 3.4157 0 0 0 0.40604 1 29643 29643 2.5775 0 1 + 5909 19622 3671 3675 7438 7438 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.939 1 20.465 19.965 20.965 3.5261 0 0 0 0.40604 1 904 904 2.5775 0 1 + 5910 19622 3671 3675 7439 7439 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.242431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 17.987 1 21.514 21.014 22.014 3.5261 0 0 0 0.40604 1 1137 1137 2.5775 0 1 + 5911 19622 3671 3675 7440 7440 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24249267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.297 1 21.828 21.328 22.328 3.5313 0 0 0 0.40604 1 1209 1209 2.5775 0 1 + 5912 19622 3671 3675 7441 7441 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.818 1 22.349 21.849 22.849 3.5313 0 0 0 0.40604 1 1326 1326 2.5775 0 1 + 5913 19622 3671 3675 7442 7442 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.929 1 23.467 22.967 23.967 3.5378 0 0 0 0.40604 1 1593 1593 2.5775 0 1 + 5914 19622 3671 3675 7443 7443 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.008 1 23.546 23.046 24.046 3.5378 0 0 0 0.40604 1 1615 1615 2.5775 0 1 + 5915 19622 3671 3675 7444 7444 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.311 1 23.856 23.356 24.356 3.5454 0 0 0 0.40604 1 1689 1689 2.5775 0 1 + 5916 19622 3671 3675 7445 7445 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2436218261719 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.552 1 24.097 23.597 24.597 3.5454 0 0 0 0.40604 1 1750 1750 2.5775 0 1 + 5917 19622 3671 3675 7446 7446 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.208 1 24.754 24.254 25.254 3.5454 0 0 0 0.40604 1 1906 1906 2.5775 0 1 + 5918 19622 3671 3675 7447 7447 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.813 1 25.366 24.866 25.866 3.5533 0 0 0 0.40604 1 2049 2049 2.5775 0 1 + 5919 19622 3671 3675 7448 7448 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.092 1 25.646 25.146 26.146 3.5533 0 0 0 0.40604 1 2110 2110 2.5775 0 1 + 5920 19622 3671 3675 7449 7449 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.298 1 25.851 25.351 26.351 3.5533 0 0 0 0.40604 1 2158 2158 2.5775 0 1 + 5921 19622 3671 3675 7450 7450 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.764 1 26.325 25.825 26.825 3.5605 0 0 0 0.40604 1 2270 2270 2.5775 0 1 + 5922 19622 3671 3675 7451 7451 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.887 1 26.448 25.948 26.948 3.5605 0 0 0 0.40604 1 2300 2300 2.5775 0 1 + 5923 19622 3671 3675 7452 7452 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.078 1 26.638 26.138 27.138 3.5605 0 0 0 0.40604 1 2350 2350 2.5775 0 1 + 5924 19622 3671 3675 7453 7453 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2431945800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.613 1 27.179 26.679 27.679 3.5655 0 0 0 0.40604 1 2488 2488 2.5775 0 1 + 5925 19622 3671 3675 7454 7454 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.67 1 28.237 27.737 28.737 3.5667 0 0 0 0.40604 1 2758 2758 2.5775 0 1 + 5926 19622 3671 3675 7455 7455 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.894 1 28.461 27.961 28.961 3.5667 0 0 0 0.40604 1 2817 2817 2.5775 0 1 + 5927 19622 3671 3675 7456 7456 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2431945800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.252 1 28.819 28.319 29.319 3.5667 0 0 0 0.40604 1 2912 2912 2.5775 0 1 + 5928 19622 3671 3675 7457 7457 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2434387207031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.648 1 29.215 28.715 29.715 3.5667 0 0 0 0.40604 1 3021 3021 2.5775 0 1 + 5929 19622 3671 3675 7458 7458 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2435607910156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.894 1 29.461 28.961 29.961 3.5667 0 0 0 0.40604 1 3088 3088 2.5775 0 1 + 5930 19622 3671 3675 7459 7459 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.242431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.809 1 30.372 29.872 30.872 3.5629 0 0 0 0.40604 1 3352 3352 2.5775 0 1 + 5931 19622 3671 3675 7460 7460 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2426452636719 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.278 1 30.841 30.341 31.341 3.5629 0 0 0 0.40604 1 3487 3487 2.5775 0 1 + 5932 19622 3671 3675 7461 7461 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.415 1 30.977 30.477 31.477 3.5629 0 0 0 0.40604 1 3526 3526 2.5775 0 1 + 5933 19622 3671 3675 7462 7462 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2433776855469 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 34.013 1 37.533 37.033 38.033 3.5201 0 0 0 0.40604 1 5386 5386 2.5775 0 1 + 5934 19622 3671 3675 7463 7463 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2434997558594 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 34.644 1 38.158 37.658 38.658 3.5144 0 0 0 0.40604 1 5569 5569 2.5775 0 1 + 5935 19622 3671 3675 7464 7464 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2423400878906 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 56.134 1 59.635 59.135 60.135 3.5014 0 0 0 0.40604 1 12049 12049 2.5775 0 1 + 5936 19622 3671 3675 7465 7465 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.81 1 115.44 114.94 115.94 3.6326 0 0 0 0.40604 1 27127 27127 2.5775 0 1 + 5937 19622 3671 3675 7466 7466 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2427978515625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.05 115.55 116.55 3.6321 0 0 0 0.40604 1 27281 27281 2.5775 0 1 + 5938 19622 3671 3675 7467 7467 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.02 1 116.66 116.16 117.16 3.6314 0 0 0 0.40604 1 27447 27447 2.5775 0 1 + 5939 19622 3671 3675 7468 7468 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.54 1 117.17 116.67 117.67 3.6314 0 0 0 0.40604 1 27583 27583 2.5775 0 1 + 5940 19622 3671 3675 7469 7469 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.98 1 118.61 118.11 119.11 3.6301 0 0 0 0.40604 1 27963 27963 2.5775 0 1 + 5941 19622 3671 3675 7470 7470 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2426452636719 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.21 1 118.83 118.33 119.33 3.6282 0 0 0 0.40604 1 28021 28021 2.5775 0 1 + 5942 19622 3671 3675 7471 7471 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2432556152344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.45 1 119.08 118.58 119.58 3.6282 0 0 0 0.40604 1 28085 28085 2.5775 0 1 + 5943 19622 3671 3675 7472 7472 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2427062988281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.27 1 119.89 119.39 120.39 3.6254 0 0 0 0.40604 1 28306 28306 2.5775 0 1 + 5944 19622 3671 3675 7473 7473 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.41 1 120.03 119.53 120.53 3.6254 0 0 0 0.40604 1 28346 28346 2.5775 0 1 + 5945 19622 3671 3675 7474 7474 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.86 1 120.49 119.99 120.99 3.6254 0 0 0 0.40604 1 28469 28469 2.5775 0 1 + 5946 19622 3671 3675 7475 7475 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.14 1 120.76 120.26 121.26 3.6254 0 0 0 0.40604 1 28544 28544 2.5775 0 1 + 5947 19622 3671 3675 7476 7476 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2425842285156 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.26 1 120.89 120.39 121.39 3.6215 0 0 0 0.40604 1 28573 28573 2.5775 0 1 + 5948 19622 3671 3675 7477 7477 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2430725097656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.4 1 121.02 120.52 121.52 3.6215 0 0 0 0.40604 1 28609 28609 2.5775 0 1 + 5949 19622 3671 3675 7478 7478 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2431945800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.68 1 121.3 120.8 121.8 3.6215 0 0 0 0.40604 1 28681 28681 2.5775 0 1 + 5950 19622 3671 3675 7479 7479 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.85 1 121.48 120.98 121.98 3.6215 0 0 0 0.40604 1 28729 28729 2.5775 0 1 + 5951 19622 3671 3675 7480 7480 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118 1 121.62 121.12 122.12 3.6215 0 0 0 0.40604 1 28770 28770 2.5775 0 1 + 5952 19622 3671 3675 7481 7481 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.243408203125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.82 1 122.44 121.94 122.94 3.6189 0 0 0 0.40604 1 28992 28992 2.5775 0 1 + 5953 19622 3671 3675 7482 7482 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2432556152344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.15 1 122.77 122.27 123.27 3.6189 0 0 0 0.40604 1 29075 29075 2.5775 0 1 + 5954 19622 3671 3675 7483 7483 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.3 1 122.92 122.42 123.42 3.6189 0 0 0 0.40604 1 29115 29115 2.5775 0 1 + 5955 19622 3671 3675 7484 7484 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_1 5 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.85 1 123.47 122.97 123.97 3.6189 0 0 0 0.40604 1 29259 29259 2.5775 0 1 + 5956 19622 3671 3675 7485 7485 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.489 1 20.142 19.642 20.642 3.6527 0 0 0 0.40604 1 828 828 2.5775 0 1 + 5957 19622 3671 3675 7486 7486 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 16.992 1 20.645 20.145 21.145 3.6525 0 0 0 0.40604 1 924 924 2.5775 0 1 + 5958 19622 3671 3675 7487 7487 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.657 1 24.305 23.805 24.805 3.648 0 0 0 0.40604 1 1816 1816 2.5775 0 1 + 5959 19622 3671 3675 7488 7488 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.994 1 24.642 24.142 25.142 3.648 0 0 0 0.40604 1 1905 1905 2.5775 0 1 + 5960 19622 3671 3675 7489 7489 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.67 1 25.316 24.816 25.816 3.6459 0 0 0 0.40604 1 2088 2088 2.5775 0 1 + 5961 19622 3671 3675 7490 7490 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.948 1 25.594 25.094 26.094 3.6459 0 0 0 0.40604 1 2160 2160 2.5775 0 1 + 5962 19622 3671 3675 7491 7491 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.961 1 25.607 25.107 26.107 3.6459 0 0 0 0.40604 1 2164 2164 2.5775 0 1 + 5963 19622 3671 3675 7492 7492 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.072 1 25.718 25.218 26.218 3.6459 0 0 0 0.40604 1 2195 2195 2.5775 0 1 + 5964 19622 3671 3675 7493 7493 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.571 1 26.214 25.714 26.714 3.6432 0 0 0 0.40604 1 2328 2328 2.5775 0 1 + 5965 19622 3671 3675 7494 7494 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.742 1 26.385 25.885 26.885 3.6432 0 0 0 0.40604 1 2370 2370 2.5775 0 1 + 5966 19622 3671 3675 7495 7495 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.958 1 26.601 26.101 27.101 3.6432 0 0 0 0.40604 1 2424 2424 2.5775 0 1 + 5967 19622 3671 3675 7496 7496 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2425231933594 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.431 1 27.074 26.574 27.574 3.6432 0 0 0 0.40604 1 2555 2555 2.5775 0 1 + 5968 19622 3671 3675 7497 7497 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.059 1 27.699 27.199 28.199 3.6397 0 0 0 0.40604 1 2732 2732 2.5775 0 1 + 5969 19622 3671 3675 7498 7498 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2422180175781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 24.19 1 27.83 27.33 28.33 3.6397 0 0 0 0.40604 1 2769 2769 2.5775 0 1 + 5970 19622 3671 3675 7499 7499 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24273681640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.251 1 28.888 28.388 29.388 3.6363 0 0 0 0.40604 1 3052 3052 2.5775 0 1 + 5971 19622 3671 3675 7500 7500 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.619 1 30.252 29.752 30.752 3.6332 0 0 0 0.40604 1 3415 3415 2.5775 0 1 + 5972 19622 3671 3675 7501 7501 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24334716796875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.945 1 30.576 30.076 31.076 3.6311 0 0 0 0.40604 1 3502 3502 2.5775 0 1 + 5973 19622 3671 3675 7502 7502 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 27.445 1 31.076 30.576 31.576 3.6311 0 0 0 0.40604 1 3637 3637 2.5775 0 1 + 5974 19622 3671 3675 7503 7503 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2422790527344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 30.257 1 33.892 33.392 34.392 3.6351 0 0 0 0.40604 1 4402 4402 2.5775 0 1 + 5975 19622 3671 3675 7504 7504 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2433776855469 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 32.996 1 36.646 36.146 37.146 3.6497 0 0 0 0.40604 1 5162 5162 2.5775 0 1 + 5976 19622 3671 3675 7505 7505 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 33.07 1 36.72 36.22 37.22 3.6497 0 0 0 0.40604 1 5182 5182 2.5775 0 1 + 5977 19622 3671 3675 7506 7506 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2432861328125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 35.778 1 39.466 38.966 39.966 3.6877 0 0 0 0.40604 1 5941 5941 2.5775 0 1 + 5978 19622 3671 3675 7507 7507 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2444152832031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 36.173 1 39.861 39.361 40.361 3.6877 0 0 0 0.40604 1 6052 6052 2.5775 0 1 + 5979 19622 3671 3675 7508 7508 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 36.319 1 40.007 39.507 40.507 3.6877 0 0 0 0.40604 1 6091 6091 2.5775 0 1 + 5980 19622 3671 3675 7509 7509 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24359130859375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 40.316 1 44.058 43.558 44.558 3.7413 0 0 0 0.40604 1 7246 7246 2.5775 0 1 + 5981 19622 3671 3675 7510 7510 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.243408203125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 44.231 1 47.993 47.493 48.493 3.7617 0 0 0 0.40604 1 8407 8407 2.5775 0 1 + 5982 19622 3671 3675 7511 7511 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2418518066406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 44.327 1 48.088 47.588 48.588 3.7617 0 0 0 0.40604 1 8436 8436 2.5775 0 1 + 5983 19622 3671 3675 7512 7512 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430725097656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 46.598 1 50.348 49.848 50.848 3.7494 0 0 0 0.40604 1 9124 9124 2.5775 0 1 + 5984 19622 3671 3675 7513 7513 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2425231933594 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 47.696 1 51.432 50.932 51.932 3.7361 0 0 0 0.40604 1 9449 9449 2.5775 0 1 + 5985 19622 3671 3675 7514 7514 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2438049316406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 49.907 1 53.602 53.102 54.102 3.6946 0 0 0 0.4044 1 10134 10134 4.756 0 1 + 5986 19622 3671 3675 7515 7515 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24346923828125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 55.419 1 58.975 58.475 59.475 3.5559 0 0 0 0.40604 1 11809 11809 2.5775 0 1 + 5987 19622 3671 3675 7516 7516 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24334716796875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.39 1 115.05 114.55 115.55 3.6666 0 0 0 0.40604 1 26497 26497 2.5775 0 1 + 5988 19622 3671 3675 7517 7517 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.59 1 115.26 114.76 115.76 3.6666 0 0 0 0.40604 1 26545 26545 2.5775 0 1 + 5989 19622 3671 3675 7518 7518 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.76 1 115.43 114.93 115.93 3.6666 0 0 0 0.40604 1 26593 26593 2.5775 0 1 + 5990 19622 3671 3675 7519 7519 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24365234375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.35 1 116.02 115.52 116.52 3.6648 0 0 0 0.40604 1 26765 26765 2.5775 0 1 + 5991 19622 3671 3675 7520 7520 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.48 1 116.14 115.64 116.64 3.6648 0 0 0 0.40604 1 26799 26799 2.5775 0 1 + 5992 19622 3671 3675 7521 7521 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.16 1 116.82 116.32 117.32 3.6648 0 0 0 0.40604 1 26992 26992 2.5775 0 1 + 5993 19622 3671 3675 7522 7522 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24334716796875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.33 1 116.99 116.49 117.49 3.663 0 0 0 0.40604 1 27042 27042 2.5775 0 1 + 5994 19622 3671 3675 7523 7523 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2427062988281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.72 1 117.38 116.88 117.88 3.663 0 0 0 0.40604 1 27151 27151 2.5775 0 1 + 5995 19622 3671 3675 7524 7524 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.8 1 117.47 116.97 117.97 3.663 0 0 0 0.40604 1 27175 27175 2.5775 0 1 + 5996 19622 3671 3675 7525 7525 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24334716796875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.23 1 117.9 117.4 118.4 3.663 0 0 0 0.40604 1 27295 27295 2.5775 0 1 + 5997 19622 3671 3675 7526 7526 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2427978515625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 114.55 1 118.21 117.71 118.71 3.6616 0 0 0 0.40604 1 27384 27384 2.5775 0 1 + 5998 19622 3671 3675 7527 7527 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2432556152344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.53 1 119.19 118.69 119.69 3.6607 0 0 0 0.40604 1 27654 27654 2.5775 0 1 + 5999 19622 3671 3675 7528 7528 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.7 1 119.36 118.86 119.86 3.6607 0 0 0 0.40604 1 27698 27698 2.5775 0 1 + 6000 19622 3671 3675 7529 7529 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 116.43 1 120.09 119.59 120.59 3.6607 0 0 0 0.40604 1 27889 27889 2.5775 0 1 + 6001 19622 3671 3675 7530 7530 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2427978515625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.1 1 120.76 120.26 121.26 3.6607 0 0 0 0.40604 1 28057 28057 2.5775 0 1 + 6002 19622 3671 3675 7531 7531 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2425537109375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.26 1 120.92 120.42 121.42 3.6607 0 0 0 0.40604 1 28097 28097 2.5775 0 1 + 6003 19622 3671 3675 7532 7532 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.41 1 121.07 120.57 121.57 3.6607 0 0 0 0.40604 1 28141 28141 2.5775 0 1 + 6004 19622 3671 3675 7533 7533 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.52 1 121.18 120.68 121.68 3.6607 0 0 0 0.40604 1 28168 28168 2.5775 0 1 + 6005 19622 3671 3675 7534 7534 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24310302734375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.72 1 121.38 120.88 121.88 3.6627 0 0 0 0.40604 1 28219 28219 2.5775 0 1 + 6006 19622 3671 3675 7535 7535 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.87 1 121.54 121.04 122.04 3.6627 0 0 0 0.40604 1 28256 28256 2.5775 0 1 + 6007 19622 3671 3675 7536 7536 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.09 1 121.75 121.25 122.25 3.6627 0 0 0 0.40604 1 28305 28305 2.5775 0 1 + 6008 19622 3671 3675 7537 7537 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.36 1 122.02 121.52 122.52 3.6627 0 0 0 0.40604 1 28379 28379 2.5775 0 1 + 6009 19622 3671 3675 7538 7538 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.6 1 122.26 121.76 122.76 3.6627 0 0 0 0.40604 1 28439 28439 2.5775 0 1 + 6010 19622 3671 3675 7539 7539 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.24285888671875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.83 1 122.5 122 123 3.6652 0 0 0 0.40604 1 28502 28502 2.5775 0 1 + 6011 19622 3671 3675 7540 7540 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.17 1 122.83 122.33 123.33 3.6652 0 0 0 0.40604 1 28594 28594 2.5775 0 1 + 6012 19622 3671 3675 7541 7541 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_2 6 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 119.61 1 123.28 122.78 123.78 3.6652 0 0 0 0.40604 1 28708 28708 2.5775 0 1 + 6013 19622 3671 3675 7542 7542 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2424621582031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 17.857 1 21.42 20.92 21.92 3.5637 0 0 0 0.40604 1 1082 1082 2.5775 0 1 + 6014 19622 3671 3675 7543 7543 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2427062988281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.106 1 21.67 21.17 22.17 3.5637 0 0 0 0.40604 1 1142 1142 2.5775 0 1 + 6015 19622 3671 3675 7544 7544 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.31 1 21.898 21.398 22.398 3.5874 0 0 0 0.40604 1 1188 1188 2.5775 0 1 + 6016 19622 3671 3675 7545 7545 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.24249267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 18.477 1 22.064 21.564 22.564 3.5874 0 0 0 0.40604 1 1228 1228 2.5775 0 1 + 6017 19622 3671 3675 7546 7546 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2431335449219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.033 1 22.62 22.12 23.12 3.5874 0 0 0 0.40604 1 1365 1365 2.5775 0 1 + 6018 19622 3671 3675 7547 7547 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2427673339844 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 19.613 1 23.234 22.734 23.734 3.6215 0 0 0 0.40604 1 1515 1515 2.5775 0 1 + 6019 19622 3671 3675 7548 7548 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.24224853515625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.53 1 24.196 23.696 24.696 3.6667 0 0 0 0.40604 1 1765 1765 2.5775 0 1 + 6020 19622 3671 3675 7549 7549 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.631 1 24.298 23.798 24.798 3.6667 0 0 0 0.40604 1 1794 1794 2.5775 0 1 + 6021 19622 3671 3675 7550 7550 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.24267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 20.962 1 24.629 24.129 25.129 3.6667 0 0 0 0.40604 1 1889 1889 2.5775 0 1 + 6022 19622 3671 3675 7551 7551 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2432861328125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.328 1 24.994 24.494 25.494 3.6667 0 0 0 0.40604 1 1984 1984 2.5775 0 1 + 6023 19622 3671 3675 7552 7552 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2432861328125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 21.96 1 25.674 25.174 26.174 3.7144 0 0 0 0.40604 1 2161 2161 2.5775 0 1 + 6024 19622 3671 3675 7553 7553 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.24261474609375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.177 1 25.891 25.391 26.391 3.7144 0 0 0 0.40604 1 2222 2222 2.5775 0 1 + 6025 19622 3671 3675 7554 7554 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 22.99 1 26.741 26.241 27.241 3.7507 0 0 0 0.40604 1 2437 2437 2.5775 0 1 + 6026 19622 3671 3675 7555 7555 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2438049316406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.436 1 27.186 26.686 27.686 3.7507 0 0 0 0.40604 1 2564 2564 2.5775 0 1 + 6027 19622 3671 3675 7556 7556 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.559 1 27.31 26.81 27.81 3.7507 0 0 0 0.40604 1 2599 2599 2.5775 0 1 + 6028 19622 3671 3675 7557 7557 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2434997558594 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.669 1 27.438 26.938 27.938 3.769 0 0 0 0.40604 1 2631 2631 2.5775 0 1 + 6029 19622 3671 3675 7558 7558 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2422180175781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 23.741 1 27.51 27.01 28.01 3.769 0 0 0 0.40604 1 2651 2651 2.5775 0 1 + 6030 19622 3671 3675 7559 7559 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430114746094 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.435 1 29.204 28.704 29.704 3.769 0 0 0 0.40604 1 3092 3092 2.5775 0 1 + 6031 19622 3671 3675 7560 7560 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2418518066406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.819 1 29.585 29.085 30.085 3.7663 0 0 0 0.40604 1 3193 3193 2.5775 0 1 + 6032 19622 3671 3675 7561 7561 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.837 1 30.601 30.101 31.101 3.7649 0 0 0 0.40604 1 3449 3449 2.5775 0 1 + 6033 19622 3671 3675 7562 7562 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 32.42 1 36.109 35.609 36.609 3.6896 0 0 0 0.40604 1 4927 4927 2.5775 0 1 + 6034 19622 3671 3675 7563 7563 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 34.682 1 38.354 37.854 38.854 3.6721 0 0 0 0.40604 1 5534 5534 2.5775 0 1 + 6035 19622 3671 3675 7564 7564 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 35.838 1 39.505 39.005 40.005 3.6667 0 0 0 0.40604 1 5861 5861 2.5775 0 1 + 6036 19622 3671 3675 7565 7565 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2428894042969 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 36.894 1 40.557 40.057 41.057 3.663 0 0 0 0.40604 1 6157 6157 2.5775 0 1 + 6037 19622 3671 3675 7566 7566 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 37.223 1 40.885 40.385 41.385 3.663 0 0 0 0.40604 1 6249 6249 2.5775 0 1 + 6038 19622 3671 3675 7567 7567 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2421875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 37.721 1 41.38 40.88 41.88 3.6595 0 0 0 0.40604 1 6392 6392 2.5775 0 1 + 6039 19622 3671 3675 7568 7568 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2425537109375 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 38.081 1 41.741 41.241 42.241 3.6595 0 0 0 0.40604 1 6500 6500 2.5775 0 1 + 6040 19622 3671 3675 7569 7569 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430725097656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 44.707 1 48.344 47.844 48.844 3.6372 0 0 0 0.40604 1 8476 8476 2.5775 0 1 + 6041 19622 3671 3675 7570 7570 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.24322509765625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 45.298 1 48.935 48.435 49.435 3.6372 0 0 0 0.40604 1 8658 8658 2.5775 0 1 + 6042 19622 3671 3675 7571 7571 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 57.874 1 61.406 60.906 61.906 3.5317 0 0 0 0.40604 1 12490 12490 2.5775 0 1 + 6043 19622 3671 3675 7572 7572 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 59.431 1 62.954 62.454 63.454 3.5231 0 0 0 0.40604 1 12970 12970 2.5775 0 1 + 6044 19622 3671 3675 7573 7573 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2427978515625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 70.914 1 74.433 73.933 74.933 3.5185 0 0 0 0.40604 1 16432 16432 2.5775 0 1 + 6045 19622 3671 3675 7574 7574 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430725097656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 111.52 1 115.18 114.68 115.68 3.6654 0 0 0 0.40604 1 26471 26471 2.5775 0 1 + 6046 19622 3671 3675 7575 7575 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.24267578125 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.31 1 115.97 115.47 116.47 3.6614 0 0 0 0.40604 1 26681 26681 2.5775 0 1 + 6047 19622 3671 3675 7576 7576 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2440490722656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 112.99 1 116.64 116.14 117.14 3.6568 0 0 0 0.40604 1 26856 26856 2.5775 0 1 + 6048 19622 3671 3675 7577 7577 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2428283691406 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.42 1 117.08 116.58 117.58 3.6568 0 0 0 0.40604 1 26969 26969 2.5775 0 1 + 6049 19622 3671 3675 7578 7578 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2432556152344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 113.73 1 117.38 116.88 117.88 3.6568 0 0 0 0.40604 1 27051 27051 2.5775 0 1 + 6050 19622 3671 3675 7579 7579 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2430419921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 115.08 1 118.72 118.22 119.22 3.6433 0 0 0 0.40604 1 27379 27379 2.5775 0 1 + 6051 19622 3671 3675 7580 7580 -0.013975849367511728 EMDILQNI 8 Unmodified _EMDILQNI_ 0 0 0 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 REV__nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS UPN48_class_I_Rep_3 7 488.2429504394531 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.74 1 122.33 121.83 122.83 3.5847 0 0 0 0.40604 1 28232 28232 2.5775 0 1 + 6052 19622 3671 3675 7581 7581 -0.013975849367511728 EMDKCLVH 8 Unmodified _EMDKCLVH_ 0 0 0 REV__L1PA5_dup4939|chr7:29659069-29659632:-|1.011264615351425|0.1852025751933206|2.45|151.0|15|3|sense REV__L1PA5_dup4939|chr7:29659069-29659632:-|1.011264615351425|0.1852025751933206|2.45|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 487.72393798828125 2 487.725338 973.436123 NaN NaN NaN NaN NaN NaN NaN 115.87 1 119.49 118.99 119.99 3.6282 0 0 0 0.40604 1 28200 28200 2.5775 0 1 + 6053 29773 3672 3676 7582 7582 -0.05165794123058731 EMDKCLVH 8 Unmodified _EMDKCLVH_ 0 0 0 REV__L1PA5_dup4939|chr7:29659069-29659632:-|1.011264615351425|0.1852025751933206|2.45|151.0|15|3|sense REV__L1PA5_dup4939|chr7:29659069-29659632:-|1.011264615351425|0.1852025751933206|2.45|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 487.7233581542969 2 487.725338 973.436123 NaN NaN NaN NaN NaN NaN NaN 116.73 1 120.35 119.85 120.85 3.6254 0 0 0 0.40604 1 28435 28435 2.5775 0 1 + 6054 29773 3672 3676 7583 7583 -0.05165794123058731 EMDKDHKWL 9 Unmodified _EMDKDHKWL_ 0 0 0 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 MSMS UPN47_class_I_Rep_1 2 601.2876586914062 2 601.287148 1200.55974 NaN NaN NaN NaN NaN NaN NaN 39.331 1 42.996 42.496 43.496 3.6652 0 0 0 0.39518 1 7680 7680 1.8442 0 1 + 6055 17692 3673 3677 7584 7584 -0.03251419751063622 EMDKLLAR 8 Unmodified _EMDKLLAR_ 0 0 0 L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|16|1|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|16|1|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 488.2698669433594 2 488.268227 974.521901 NaN NaN NaN NaN NaN NaN NaN 72.048 1 72.048 71.548 72.548 0 0 0 0 0.40604 1 16631 16631 2.5775 0 1 6056 8687 3674 3678 7585 7585 0.03362114054118592 EMDKLLAR 8 Unmodified _EMDKLLAR_ 0 0 0 L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|16|1|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|16|1|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 488.2903137207031 2 488.268227 974.521901 NaN NaN NaN NaN NaN NaN NaN 110.82 1 114.48 113.98 114.98 3.6654 0 0 0 0.40604 1 26291 26291 2.5775 0 1 6057 8687 3674 3678 7586 7586 0.03362114054118592 EMDKLLDI 8 Unmodified _EMDKLLDI_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|2|1|sense;L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|171|3|sense;L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|16|2|sense;L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|95|2|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|2|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 488.75592041015625 2 488.754618 975.494683 NaN NaN NaN NaN NaN NaN NaN 22.275 1 22.275 21.775 22.775 0 0 0 0 0.4044 1 2620 2620 4.756 0 1 6058 9495 3675 3679 7587 7587 0.005955857230787842 EMDPMLLK 8 Unmodified _EMDPMLLK_ 0 0 0 REV__LTR10E_dup261|chr19:58268399-58269012:-|2.743823874234337|0.3723498685780835|2.88|151.0|31|2|anti-sense REV__LTR10E_dup261|chr19:58268399-58269012:-|2.743823874234337|0.3723498685780835|2.88|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 488.7466125488281 2 488.745739 975.476925 NaN NaN NaN NaN NaN NaN NaN 70.85 1 74.369 73.869 74.869 3.5185 0 0 0 0.40604 1 16415 16415 2.5775 0 1 + 6059 30791 3676 3680 7588 7588 -0.011794528034215546 EMDRGVRI 8 Unmodified _EMDRGVRI_ 0 0 0 REV__L1MA9_dup12497|chr12:104612678-104612939:+|1.2928564203526876|0.0055952030247627|7.85|151.0|6|3|sense REV__L1MA9_dup12497|chr12:104612678-104612939:+|1.2928564203526876|0.0055952030247627|7.85|151.0|6|3|sense MSMS UPN47_class_I_Rep_1 2 488.2426452636719 2 488.255651 974.496749 NaN NaN NaN NaN NaN NaN NaN 33.946 1 37.644 37.144 38.144 3.6983 0 0 0 0.40604 1 6044 6044 2.5775 0 1 + 6060 25606 3677 3681 7589 7589 0.008480592515411445 EMDRGVRI 8 Unmodified _EMDRGVRI_ 0 0 0 REV__L1MA9_dup12497|chr12:104612678-104612939:+|1.2928564203526876|0.0055952030247627|7.85|151.0|6|3|sense REV__L1MA9_dup12497|chr12:104612678-104612939:+|1.2928564203526876|0.0055952030247627|7.85|151.0|6|3|sense MSMS UPN47_class_I_Rep_1 2 488.2430419921875 2 488.255651 974.496749 NaN NaN NaN NaN NaN NaN NaN 113.47 1 117.04 116.54 117.54 3.572 0 0 0 0.40604 1 27997 27997 2.5775 0 1 + 6061 25606 3677 3681 7590 7590 0.008480592515411445 EMDYSMLS 8 Unmodified _EMDYSMLS_ 0 0 0 REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|13|1|anti-sense REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|13|1|anti-sense MSMS UPN46_class_I_Rep_3 1 488.1924743652344 2 488.193536 974.372519 NaN NaN NaN NaN NaN NaN NaN 69.407 1 69.407 68.907 69.907 0 0 0 0 0.40604 1 15903 15903 2.5775 0 1 + 6062 26470 3678 3682 7591 7591 -0.11569199350810777 EMDYSMLS 8 Unmodified _EMDYSMLS_ 0 0 0 REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|13|1|anti-sense REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|13|1|anti-sense MSMS UPN46_class_I_Rep_3 1 487.8361511230469 2 488.193536 974.372519 NaN NaN NaN NaN NaN NaN NaN 72.633 1 72.633 72.133 73.133 0 0 0 0 0.40604 1 16796 16796 2.5775 0 1 + 6063 26470 3678 3682 7592 7592 -0.11569199350810777 EMEEVGKRYR 10 Unmodified _EMEEVGKRYR_ 0 0 0 ENST00000514900.5_1_3:129122974-129137267:-|nuORF;ENSG00000172771|ENST00000505956|EFCAB12;ENST00000503498.1_1_3:129120438-129130339:-|nuORF ENST00000514900.5_1_3:129122974-129137267:-|nuORF ENST00000514900.5_1_3:129122974-129137267:-|nuORF MSMS UPN48_class_I_Rep_2 6 432.8850402832031 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 100.92 1 104.66 104.16 105.16 3.7417 0 0 0 0.53105 1 23956 23956 0.62683 0 1 6064 4591 3679 3683 7593 7593 -0.006769608023205365 EMEMSDDENC 10 Unmodified _EMEMSDDENC_ 0 0 0 nc|ENSG00000120658|Q8TC92-2|ENOX1;ENSG00000120658|ENST00000690772|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 MSMS UPN48_class_I_Rep_1 5 601.68603515625 2 601.685946 1201.35734 NaN NaN NaN NaN NaN NaN NaN 119.98 1 123.6 123.1 124.1 3.6189 0 0 0 0.53105 1 29295 29295 0 0 1 6065 2331 3680 3684 7594 7594 -0.235284790009473 EMEQLRKEMEQ 11 Unmodified _EMEQLRKEMEQ_ 0 0 0 REV__nc|ENSG00000054523|O60333-3|KIF1B REV__nc|ENSG00000054523|O60333-3|KIF1B MULTI-SECPEP UPN47_class_I_Rep_2 3 484.56109619140625 3 484.22701 1449.6592 -0.17901 -8.6684E-05 0.52233 0.00025293 0.34332 0.00016624 484.2272487619187 36.978 0.53579 40.377 40.223 40.759 3.3988 53 40 2 0 0 0 22.551 1 7053 7053 0.50596 0 1 92458 + 6066 31936 3681 3685 7595 7595 -0.047643899192962635 EMFIFWFFA 9 Unmodified _EMFIFWFFA_ 0 0 0 REV__ENST00000261942.6_1_5:175919238-175921216:+|nuORF REV__ENST00000261942.6_1_5:175919238-175921216:+|nuORF MSMS UPN48_class_I_Rep_1 5 619.2921752929688 2 619.291171 1236.56779 NaN NaN NaN NaN NaN NaN NaN 43.511 1 47.022 46.522 47.522 3.5103 0 0 0 0.40038 1 8176 8176 0.6015 0 1 + 6067 21565 3682 3686 7596 7596 -0.041032407636521384 EMFVGVWY 8 Unmodified _EMFVGVWY_ 0 0 0 REV__MER21C_dup235|chr1:150112549-150113336:-|1.6154683980762128|0.0663103858770017|4.61|151.0|39|1|anti-sense REV__MER21C_dup235|chr1:150112549-150113336:-|1.6154683980762128|0.0663103858770017|4.61|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7376098632812 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 28.399 1 31.956 31.456 32.456 3.5571 0 0 0 0.40738 1 3794 3794 0.79363 0 1 + 6068 31224 3683 3687 7597 7597 -0.05056362240202361 EMIALDLQP 9 Unmodified _EMIALDLQP_ 0 0 0 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 MULTI-MSMS UPN48_class_I_Rep_1 5 515.2678833007812 2 515.267893 1028.52123 0.28345 0.00014605 0.017468 9.0005E-06 0.30092 0.00015505 515.2678011432038 74.645 0.74084 78.135 77.828 78.569 3.49 192 78 3 0 0 0 0.24936 4 17645 17614;17645;17723;17758 17.113 2.9685 1 869660 6069 1505 3684 3688 7598;7599;7600;7601 7599 0.00811274614420654 EMIALDLQP 9 Unmodified _EMIALDLQP_ 0 0 0 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 MULTI-MSMS UPN48_class_I_Rep_2 6 515.2671508789062 2 515.267893 1028.52123 0.33449 0.00017235 0.18785 9.6793E-05 0.52234 0.00026915 515.267888904995 74.562 0.73506 78.152 77.778 78.513 3.59 195 84 3 0 0 0 0.24936 5 17504 17504;17533;17562;17600;17641 17.113 4.0704 1 670890 6070 1505 3684 3688 7602;7603;7604;7605;7606 7602 0.00811274614420654 EMIALDLQP 9 Unmodified _EMIALDLQP_ 0 0 0 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2698364257812 2 515.267893 1028.52123 0.38564 0.00019871 1.5178 0.00078208 1.9034 0.00098079 515.2685991692604 74.586 0.48325 78.136 78.011 78.494 3.5505 127 50 3 0 0 0 0.17897 3 17486 17486;17519;17553 22.736 1.1993 1 834150 6071 1505 3684 3688 7607;7608;7609 7607 0.00811274614420654 EMIYVHWM 8 Unmodified _EMIYVHWM_ 0 0 0 REV__L1PA7_dup12730|chr21:5443559-5445791:+|1.4276676922608356|0.0132323957682348|6.75|142.0|16|1|sense REV__L1PA7_dup12730|chr21:5443559-5445791:+|1.4276676922608356|0.0132323957682348|6.75|142.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 554.750732421875 2 554.751356 1107.48816 NaN NaN NaN NaN NaN NaN NaN 27.69 1 27.69 27.19 28.19 0 0 0 0 0.40604 1 4145 4145 2.5775 0.27475 1 + 6072 30020 3685 3689 7610 7610 -0.06128630709281424 EMKYTAQES 9 Unmodified _EMKYTAQES_ 0 0 0 REV__L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|19|1|sense REV__L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|19|1|sense MSMS UPN48_class_I_Rep_1 5 543.7435302734375 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 25.525 1 29.092 28.592 29.592 3.5667 0 0 0 0.38478 1 2987 2987 4.3292 0.38484 1 + 6073 30212 3686 3690 7611 7611 -0.06939094150311576 EMLFYLAY 8 Unmodified _EMLFYLAY_ 0 0 0 REV__L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|94|1|anti-sense REV__L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|94|1|anti-sense MSMS UPN47_class_I_Rep_1 2 525.25439453125 2 525.254254 1048.49396 NaN NaN NaN NaN NaN NaN NaN 30.685 1 34.43 33.93 34.93 3.7449 0 0 0 0.40404 1 5048 5048 5.2307 0 1 + 6074 27803 3687 3691 7612 7612 -0.028352089259897184 EMMFTRYWV 9 Unmodified _EMMFTRYWV_ 0 0 0 REV__nc|ENSG00000138472|O95843-2|GUCA1C REV__nc|ENSG00000138472|O95843-2|GUCA1C MSMS UPN47_class_I_Rep_1 2 631.7872314453125 2 631.788469 1261.56239 NaN NaN NaN NaN NaN NaN NaN 49.759 1 53.419 52.919 53.919 3.6592 0 0 0 0.39428 1 10852 10852 2.0598 0.40713 1 + 6075 19276 3688 3692 7613 7613 -0.05793287617780152 EMMWRNRN 8 Unmodified _EMMWRNRN_ 0 0 0 L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|75|2|sense L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|75|2|sense L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|75|2|sense MSMS UPN47_class_I_Rep_3 4 568.7590942382812 2 568.758035 1135.50152 NaN NaN NaN NaN NaN NaN NaN 23.636 1 26.987 26.487 27.487 3.3509 0 0 0 0.40604 1 3040 3040 2.5775 0.73324 1 6076 12668 3689 3693 7614 7614 -0.06081379877355175 EMPGTGKSRDK 11 Unmodified _EMPGTGKSRDK_ 0 0 0 L1MB7_dup19452|chr16:85604132-85604490:-|1.050370977899757|0.0291971222296557|5.17|151.0|10|2|sense L1MB7_dup19452|chr16:85604132-85604490:-|1.050370977899757|0.0291971222296557|5.17|151.0|10|2|sense L1MB7_dup19452|chr16:85604132-85604490:-|1.050370977899757|0.0291971222296557|5.17|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 603.2993774414062 2 603.300787 1204.58702 -0.057614 -3.4759E-05 0.33208 0.00020034 0.27447 0.00016559 603.3009486168731 25.657 0.59046 29.419 29.132 29.723 3.7624 97 54 3 0 0 0 0.67264 1 3546 3546 1.1933 0 1 133250 6077 10771 3690 3694 7615 7615 -0.007089362106853514 EMPRHRNKYW 10 Unmodified _EMPRHRNKYW_ 0 0 0 REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|52|3|sense REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 473.23773193359375 3 472.903301 1415.68807 0.083984 3.9717E-05 -0.018472 -8.7356E-06 0.065512 3.0981E-05 472.903058963614 15.477 0.39527 19.016 18.871 19.266 3.5392 82 53 2 0 0 0 0.56444 1 625 625 0.69767 0 1 35729 + 6078 24787 3691 3695 7616 7616 -0.003144397173400648 EMVLETLIMG 10 Unmodified _EMVLETLIMG_ 0 0 0 ENST00000377694.1_1_9:38409186-38411410:-|nuORF ENST00000377694.1_1_9:38409186-38411410:-|nuORF ENST00000377694.1_1_9:38409186-38411410:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 568.3036499023438 2 568.290511 1134.56647 0.031716 1.8024E-05 0.42574 0.00024195 0.45746 0.00025997 568.2907816032504 42.979 0.55737 46.666 46.48 47.038 3.6875 67 38 2 0 0 0 0.56078 1 8904 8904 3.2813 1.4371 1 75256 6079 6463 3692 3696 7617 7617 0.004567570852714198 EMVWYLTVVLT 11 Unmodified _EMVWYLTVVLT_ 0 0 0 L1PA8A_dup2184|chr15:34928233-34929638:-|1.527971827168138|0.303124947533451|2.33|151.0|79|3|anti-sense L1PA8A_dup2184|chr15:34928233-34929638:-|1.527971827168138|0.303124947533451|2.33|151.0|79|3|anti-sense L1PA8A_dup2184|chr15:34928233-34929638:-|1.527971827168138|0.303124947533451|2.33|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_2 3 451.7811584472656 3 451.908947 1352.70501 NaN NaN NaN NaN NaN NaN NaN 71.449 1 74.739 74.239 75.239 3.2899 0 0 0 0.38417 1 17462 17462 1.1098 0 1 6080 14973 3693 3697 7618 7618 0.042766233252223174 EMWRYQKQ 8 Unmodified _EMWRYQKQ_ 0 0 0 REV__nc|ENSG00000012779|P09917-5|ALOX5 REV__nc|ENSG00000012779|P09917-5|ALOX5 MSMS UPN48_class_I_Rep_2 6 584.7136840820312 2 584.782033 1167.54951 NaN NaN NaN NaN NaN NaN NaN 20.109 1 23.759 23.259 24.259 3.6497 0 0 0 0.40746 1 1665 1665 0.69038 0 1 + 6081 17586 3694 3698 7619 7619 -0.0275598268565318 EMYQPEDDN 9 Unmodified _EMYQPEDDN_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-3|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MSMS UPN47_class_I_Rep_1 2 570.71337890625 2 570.711136 1139.40772 NaN NaN NaN NaN NaN NaN NaN 117.06 1 120.66 120.16 121.16 3.6036 0 0 0 0.39518 1 29008 29008 1.8442 0 1 6082 5426 3695 3699 7620 7620 -0.1564086528928783 ENDFPHTNCQ 10 Unmodified _ENDFPHTNCQ_ 0 0 0 REV__KDM5D|p.T268Nfs*7|1|0.17|ENSG00000012817|chrY:19735484-19735485|-/G|frameshift_variant REV__KDM5D|p.T268Nfs*7|1|0.17|ENSG00000012817|chrY:19735484-19735485|-/G|frameshift_variant MSMS UPN47_class_I_Rep_1 2 602.7354736328125 2 602.738019 1203.46149 NaN NaN NaN NaN NaN NaN NaN 114.49 1 118.07 117.57 118.57 3.5809 0 0 0 0.53105 1 28292 28292 1.4819 0.28856 1 + 6083 17587 3696 3700 7621 7621 -0.13210648066910835 ENDIQQRSK 9 Unmodified _ENDIQQRSK_ 0 0 0 nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5-4|BTBD8 nc|ENSG00000189195|Q5XKL5-4|BTBD8 MSMS UPN46_class_I_Rep_3 1 559.282470703125 2 559.283451 1116.55235 NaN NaN NaN NaN NaN NaN NaN 47.493 1 47.493 46.993 47.993 0 0 0 0 0.39036 1 9825 9825 2.9952 0 1 6084 16789 3697 3701 7622 7622 -0.001264360271534315 ENDKEVEI 8 Unmodified _ENDKEVEI_ 0 0 0 ENSG00000073910.22,FRY,chr13,+,I67.1,32278549,32287850|46|7.99|2|intron;ENSG00000073910.22,FRY,chr13,+,I67.1,32278549,32287850|46|7.99|11|intron;ENSG00000073910|ENST00000542859|FRY ENSG00000073910.22,FRY,chr13,+,I67.1,32278549,32287850|46|7.99|2|intron ENSG00000073910.22,FRY,chr13,+,I67.1,32278549,32287850|46|7.99|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 488.2353515625 2 488.235104 974.455655 0.15895 7.7606E-05 0.98289 0.00047988 1.1418 0.00055749 488.23544920802755 76.93 0.51281 80.345 80.097 80.61 3.4149 83 45 2 0 0 0 0.82752 1 19011 19011 19.257 1.122 1 156990 6085 1123 3698 3702 7623 7623 -0.03259423306928966 ENEDKVNK 8 Unmodified _ENEDKVNK_ 0 0 0 ENST00000470238.1_1_1:169838129-169857981:-|nuORF;ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3 ENST00000470238.1_1_1:169838129-169857981:-|nuORF ENST00000470238.1_1_1:169838129-169857981:-|nuORF MSMS UPN48_class_I_Rep_2 6 488.242919921875 2 488.240721 974.466889 NaN NaN NaN NaN NaN NaN NaN 111.24 1 114.9 114.4 115.4 3.6666 0 0 0 0.40746 1 26461 26461 0.69038 0 1 6086 664 3699 3703 7624 7624 -0.021366012127941758 ENFAPILAF 9 Unmodified _ENFAPILAF_ 0 0 0 nc|ENSG00000169247|Q8TF17-4|SH3TC2;ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2 nc|ENSG00000169247|Q8TF17-4|SH3TC2 nc|ENSG00000169247|Q8TF17-4|SH3TC2 MSMS UPN46_class_I_Rep_3 1 511.2685546875 2 511.271293 1020.52803 NaN NaN NaN NaN NaN NaN NaN 54.556 1 54.556 54.056 55.056 0 0 0 0 0.2088 1 11819 11819 15.847 0 1 6087 4413 3700 3704 7625 7625 0.01858955557270292 ENFKKNLE 8 Unmodified _ENFKKNLE_ 0 0 0 L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|8|1|sense L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|8|1|sense L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 511.26995849609375 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 54.458 1 54.458 53.958 54.958 0 0 0 0 0.38875 1 11792 11792 12.241 0 1 6088 14194 3701 3705 7626 7626 0.014568660635632114 ENFLKLIDP 9 Unmodified _ENFLKLIDP_ 0 0 0 REV__ENSG00000065183|ENST00000349139|WDR3 REV__ENSG00000065183|ENST00000349139|WDR3 MSMS UPN46_class_I_Rep_3 1 544.8154907226562 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 13.746 1 13.746 13.246 14.246 0 0 0 0 0.39518 1 459 459 1.8442 0.19162 1 + 6089 17752 3702 3706 7627 7627 0.05106896274514838 ENFLKLIDP 9 Unmodified _ENFLKLIDP_ 0 0 0 REV__ENSG00000065183|ENST00000349139|WDR3 REV__ENSG00000065183|ENST00000349139|WDR3 MSMS UPN46_class_I_Rep_3 1 544.816650390625 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 14.176 1 14.176 13.676 14.676 0 0 0 0 0.39518 1 567 567 1.8442 0.19162 1 + 6090 17752 3702 3706 7628 7628 0.05106896274514838 ENGAAQGLPC 10 Unmodified _ENGAAQGLPC_ 0 0 0 REV__L1MEc_dup6732|chr6:12156617-12157922:-|1.153171781393968|0.1935023045674088|2.58|151.0|78|2|anti-sense REV__L1MEc_dup6732|chr6:12156617-12157922:-|1.153171781393968|0.1935023045674088|2.58|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_1 2 480.23260498046875 2 480.216192 958.41783 NaN NaN NaN NaN NaN NaN NaN 22.769 1 26.473 25.973 26.973 3.7042 0 0 0 0.53105 1 2702 2702 10.074 0.72649 1 + 6091 28471 3703 3707 7629 7629 -0.0630421277340929 ENGGRWAW 8 Unmodified _ENGGRWAW_ 0 0 0 ENST00000567662.5_1_15:72454352-72455956:-|nuORF;ENST00000565233.5_1_15:72454352-72456104:-|nuORF;ENST00000564184.1_1_15:72455114-72459029:-|nuORF;ENSG00000175318|ENST00000309731|GRAMD2A ENST00000567662.5_1_15:72454352-72455956:-|nuORF ENST00000567662.5_1_15:72454352-72455956:-|nuORF MSMS UPN46_class_I_Rep_3 1 488.2904968261719 2 488.225208 974.435863 NaN NaN NaN NaN NaN NaN NaN 34.161 1 34.161 33.661 34.661 0 0 0 0 0.40643 1 6065 6065 2.0598 0.21551 1 6092 4719 3704 3708 7630 7630 -0.0523770973640012 ENGKIFHVDG 10 Unmodified _ENGKIFHVDG_ 0 0 0 L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|56|2|sense L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|56|2|sense L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|56|2|sense MSMS UPN47_class_I_Rep_3 4 558.2764892578125 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 34.917 1 38.181 37.681 38.681 3.2639 0 0 0 0.53105 1 6404 6404 1.1933 0 1 6093 9374 3705 3709 7631 7631 -0.01196633050494711 ENGLAAEMKSP 11 Unmodified _ENGLAAEMKSP_ 0 0 0 ENSG00000162399|ENST00000651561|BSND ENSG00000162399|ENST00000651561|BSND ENSG00000162399|ENST00000651561|BSND MSMS UPN48_class_I_Rep_1 5 573.777099609375 2 573.776613 1145.53867 NaN NaN NaN NaN NaN NaN NaN 75.852 1 79.352 78.852 79.852 3.4996 0 0 0 0.38417 1 17996 17996 2.086 0 1 6094 3926 3706 3710 7632 7632 -0.028274298505948536 ENGLSVSLTTH 11 Unmodified _ENGLSVSLTTH_ 0 0 0 REV__ENSG00000125124|ENST00000245157|BBS2 REV__ENSG00000125124|ENST00000245157|BBS2 MSMS UPN48_class_I_Rep_2 6 579.308349609375 2 579.293485 1156.57242 NaN NaN NaN NaN NaN NaN NaN 53.238 1 56.848 56.348 57.348 3.6098 0 0 0 0.38417 1 11138 11138 1.1933 0.50296 1 + 6095 18823 3707 3711 7633 7633 0.00039314912805821223 ENGNLCLLP 9 Unmodified _ENGNLCLLP_ 0 0 0 L1MB8_dup5966|chr6:155925638-155928141:-|2.0405993782188143|0.0083088586818458|7.94|150.0|182|3|anti-sense L1MB8_dup5966|chr6:155925638-155928141:-|2.0405993782188143|0.0083088586818458|7.94|150.0|182|3|anti-sense L1MB8_dup5966|chr6:155925638-155928141:-|2.0405993782188143|0.0083088586818458|7.94|150.0|182|3|anti-sense MSMS UPN48_class_I_Rep_3 7 486.283447265625 2 486.744585 971.474617 NaN NaN NaN NaN NaN NaN NaN 35.554 1 39.221 38.721 39.721 3.6667 0 0 0 0.39326 1 5780 5780 2.3027 0 1 6096 11019 3708 3712 7634 7634 -0.012261652168945147 ENHFTIHAW 9 Unmodified _ENHFTIHAW_ 0 0 0 L1MB2_dup5277|chr10:42546765-42548019:+|1.107982605396676|0.0456357626005791|4.6|151.0|65|1|anti-sense L1MB2_dup5277|chr10:42546765-42548019:+|1.107982605396676|0.0456357626005791|4.6|151.0|65|1|anti-sense L1MB2_dup5277|chr10:42546765-42548019:+|1.107982605396676|0.0456357626005791|4.6|151.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 577.26904296875 2 577.772522 1153.53049 0.2473 0.00014288 0.35763 0.00020663 0.60492 0.00034951 577.7722369828927 50.881 2.2088 54.51 52.989 55.198 3.6285 185 113 3 0 0 0 0.35081 1 11147 11147 10.824 0 1 566540 6097 10257 3709 3713 7635 7635 -0.040131959850668864 ENIMMFGF 8 Unmodified _ENIMMFGF_ 0 0 0 L1PB1_dup1848|chr2:230754820-230755703:-|1.8023009849752576|0.0290791262923109|5.95|151.0|52|3|anti-sense L1PB1_dup1848|chr2:230754820-230755703:-|1.8023009849752576|0.0290791262923109|5.95|151.0|52|3|anti-sense L1PB1_dup1848|chr2:230754820-230755703:-|1.8023009849752576|0.0290791262923109|5.95|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_3 4 494.7191162109375 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 53.685 1 56.88 56.38 57.38 3.1948 0 0 0 0.40472 1 12130 12130 4.3292 0 1 6098 15064 3710 3714 7636 7636 -0.07480295008986104 ENKINDNINEF 11 Unmodified _ENKINDNINEF_ 0 0 0 REV__ENSG00000126947|ENST00000372829|ARMCX1 REV__ENSG00000126947|ENST00000372829|ARMCX1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.5487976074219 3 450.549246 1348.62591 -0.55279 -0.00024906 -0.48692 -0.00021938 -1.0397 -0.00046844 450.548978518421 25.767 0.77993 29.261 28.934 29.714 3.4945 129 74 2 0 0 0 0.68024 1 3637 3637 0.50596 0.50596 1 94080 + 6099 18867 3711 3715 7637 7637 -0.03445932375325356 ENKKIDAYY 9 Unmodified _ENKKIDAYY_ 0 0 0 REV__L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|61|3|sense REV__L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|61|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.2864990234375 2 572.287671 1142.56079 0.34153 0.00019545 -2.2565 -0.0012914 -1.915 -0.0010959 572.2876824079657 58.434 1.6098 61.6 60.889 62.499 3.1658 368 104 6 0 0 0 0.30034 1 13512 13512 13.906 0 1 2050300 + 6100 24942 3712 3716 7638 7638 -0.004788821105421448 ENKKMRQYHTK 11 Unmodified _ENKKMRQYHTK_ 0 0 0 REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|57|2|sense REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|57|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 488.5914611816406 3 488.257632 1461.75107 0.27674 0.00013512 0.23589 0.00011518 0.51264 0.0002503 488.5915080669065 41.763 0.07095 41.763 41.732 41.803 0 12 8 2 0 0 0 0.6724 1 8214 8214 1.2148 0 1 133280 + 6101 29463 3713 3717 7639 7639 0.0386608128003445 ENLDSLVNLKV 11 Unmodified _ENLDSLVNLKV_ 0 0 0 ENSG00000188306|ENST00000340806|LRRIQ4 ENSG00000188306|ENST00000340806|LRRIQ4 ENSG00000188306|ENST00000340806|LRRIQ4 MULTI-MSMS UPN47_class_I_Rep_3 4 622.3477783203125 2 622.34826 1242.68197 0.44674 0.00027803 0.034532 2.1491E-05 0.48127 0.00029952 622.3482479520229 67.578 0.40865 70.77 70.546 70.955 3.1914 43 27 2 0 0 0 0.59293 1 16365 16365 5.4027 0 1 95945 6102 5227 3714 3718 7640 7640 0.07033320532127618 ENLEEIVKF 9 Unmodified _ENLEEIVKF_ 0 0 0 L1PA4_dup6275|chr8:131960879-131966221:+|1.0481033146682612|0.1039270785259752|3.33|151.0|126|3|sense L1PA4_dup6275|chr8:131960879-131966221:+|1.0481033146682612|0.1039270785259752|3.33|151.0|126|3|sense L1PA4_dup6275|chr8:131960879-131966221:+|1.0481033146682612|0.1039270785259752|3.33|151.0|126|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.797119140625 2 560.797872 1119.58119 0.42506 0.00023837 0.094912 5.3227E-05 0.51997 0.0002916 560.7975874363605 71.91 0.35194 75.2 75.021 75.373 3.2899 34 30 2 0 0 0 0.47493 1 17571 17571 3.2813 0.97858 1 60127 6103 14375 3715 3719 7641 7641 0.02618288549274439 ENLEEMHK 8 Unmodified _ENLEEMHK_ 0 0 0 L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|160|3|sense;L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|16|1|sense;L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|63|2|sense;L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|78|2|sense;L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|33|2|sense;L1MA1_dup545|chr3:3944527-3946272:-|1.002403934855319|0.023197463030686|5.43|151.0|27|2|sense;L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|35|1|sense;L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|40|1|sense;L1PA2_dup3007|chrX:65614681-65620735:-|1.7319222270933985|0.0399095824082452|5.44|150.0|52|2|sense;L1PA3_dup1078|chr2:97225628-97231779:-|4.695165431055631|0.4650504581609178|3.34|151.0|85|2|sense;L1PA3_dup2651|chr4:74245482-74250213:-|3.012017185249723|0.179774292875577|4.07|151.0|63|2|sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|160|3|sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|160|3|sense MSMS UPN47_class_I_Rep_3 4 514.820068359375 2 515.237124 1028.45969 NaN NaN NaN NaN NaN NaN NaN 29.006 1 32.329 31.829 32.829 3.3235 0 0 0 0.40643 1 4629 4629 2.0598 0.21551 1 6104 8504 3716 3720 7642 7642 -0.05339657084891769 ENLVSEMGVF 10 Unmodified _ENLVSEMGVF_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MULTI-MSMS UPN48_class_I_Rep_1 5 562.76806640625 2 562.768257 1123.52196 0.48864 0.00027499 2.497 0.0014052 2.9856 0.0016802 562.7695395153814 69.016 0.33235 72.471 72.316 72.649 3.4548 29 25 2 0 0 0 0.53414 1 15958 15958 7.609 0 1 83195 + 6105 16907 3717 3721 7643 7643 -0.034859307365422865 ENLVSEMGVF 10 Unmodified _ENLVSEMGVF_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS UPN48_class_I_Rep_2 6 562.7700805664062 2 562.768257 1123.52196 NaN NaN NaN NaN NaN NaN NaN 68.884 1 72.393 71.893 72.893 3.5083 0 0 0 0.53105 1 15918 15918 14.405 0 1 + 6106 16907 3717 3721 7644 7644 -0.034859307365422865 ENLVSEMGVF 10 Unmodified _ENLVSEMGVF_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS UPN48_class_I_Rep_3 7 562.7703247070312 2 562.768257 1123.52196 NaN NaN NaN NaN NaN NaN NaN 68.805 1 72.315 71.815 72.815 3.5094 0 0 0 0.53105 1 15802 15802 10.151 0.76745 1 + 6107 16907 3717 3721 7645 7645 -0.034859307365422865 ENLVSEMGVF 10 Unmodified _ENLVSEMGVF_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MSMS UPN48_class_I_Rep_3 7 562.7700805664062 2 562.768257 1123.52196 NaN NaN NaN NaN NaN NaN NaN 68.998 1 72.507 72.007 73.007 3.5094 0 0 0 0.53105 1 15861 15861 5.2969 0 1 + 6108 16907 3717 3721 7646 7646 -0.034859307365422865 ENNKIALY 8 Unmodified _ENNKIALY_ 0 0 0 REV__L1PA16_dup2116|chr3:18196788-18198133:-|1.1947335693420549|0.0029530397335555|8.66|147.0|12|1|sense REV__L1PA16_dup2116|chr3:18196788-18198133:-|1.1947335693420549|0.0029530397335555|8.66|147.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.75872802734375 2 482.758549 963.502546 0.18505 8.9336E-05 -0.047768 -2.306E-05 0.13729 6.6276E-05 482.758631357017 37.757 0.51936 37.757 37.469 37.988 0 64 51 2 0 0 0 0.82752 1 7175 7175 14.838 0 1 101940 + 6109 25478 3718 3722 7647 7647 0.019334810348368592 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 494.74810791015625 2 494.747985 987.481417 0.17927 8.8696E-05 -0.094922 -4.6962E-05 0.084352 4.1733E-05 494.74811791583835 60.929 0.052238 64.311 64.294 64.346 3.3815 6 4 2 0 0 0 0.82752 1 14257 14257 6.3541 4.0514 1 49788 6110 5399 3719 3723 7648 7648 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN47_class_I_Rep_3 4 494.7481689453125 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 61.271 1 64.436 63.936 64.936 3.1651 0 0 0 0.40581 1 14441 14441 2.8892 0.58649 1 6111 5399 3719 3723 7649 7649 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 494.7474670410156 2 494.747985 987.481417 0.33693 0.0001667 -0.01539 -7.6141E-06 0.32154 0.00015908 494.74804166094526 61.18 0.36193 64.647 64.385 64.747 3.4678 48 32 2 0 0 0 0.82752 2 13564 13564;13601 28.173 13.592 1 71240 6112 5399 3719 3723 7650;7651 7650 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN48_class_I_Rep_1 5 494.7478332519531 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 61.334 1 64.802 64.302 65.302 3.4678 0 0 0 0.4032 1 13637 13637 6.3541 2.7576 1 6113 5399 3719 3723 7652 7652 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN48_class_I_Rep_2 6 494.7489929199219 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 60.983 1 64.461 63.961 64.961 3.4785 0 0 0 0.4032 1 13509 13509 6.3541 3.4649 1 6114 5399 3719 3723 7653 7653 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN48_class_I_Rep_2 6 494.7489929199219 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 61.153 1 64.632 64.132 65.132 3.4785 0 0 0 0.39167 1 13561 13561 11.114 8.2252 1 6115 5399 3719 3723 7654 7654 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN48_class_I_Rep_3 7 494.7484130859375 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 60.848 1 64.361 63.861 64.861 3.5128 0 0 0 0.4032 1 13399 13399 6.3541 3.4649 1 6116 5399 3719 3723 7655 7655 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN48_class_I_Rep_3 7 494.7486267089844 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 61.003 1 64.516 64.016 65.016 3.5128 0 0 0 0.4032 1 13446 13446 6.3541 3.4649 1 6117 5399 3719 3723 7656 7656 -0.012824842739973974 ENPVVHFF 8 Unmodified _ENPVVHFF_ 0 0 0 ENST00000585216.5_1_18:74697360-74728973:-|nuORF;ENST00000482445.5_1_18:74701791-74728973:-|nuORF;nc|ENSG00000197971|P02686-6|MBP;ENST00000582282.5_1_18:74696797-74728973:-|nuORF;ENST00000581179.5_1_18:74696797-74728973:-|nuORF;nc|ENSG00000197971|P02686-5|MBP;nc|ENSG00000197971|P02686-4|MBP;nc|ENSG00000197971|P02686-3|MBP;ENST00000467108.1_1_18:74700562-74728973:-|nuORF;ENSG00000197971|ENST00000355994|MBP ENST00000585216.5_1_18:74697360-74728973:-|nuORF ENST00000585216.5_1_18:74697360-74728973:-|nuORF MSMS UPN48_class_I_Rep_3 7 494.7486572265625 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 61.06 1 64.573 64.073 65.073 3.5129 0 0 0 0.40581 1 13462 13462 2.8892 0 1 6118 5399 3719 3723 7657 7657 -0.012824842739973974 ENPYVTDSA 9 Unmodified _ENPYVTDSA_ 0 0 0 REV__L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|2|1|sense REV__L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 498.2211608886719 2 498.219454 994.424355 0.29611 0.00014753 1.0856 0.00054087 1.3817 0.0006884 498.2199389874619 30.351 0.31195 33.986 33.784 34.096 3.6351 39 27 2 0 0 0 0.47197 2 4382 4382;4397 3.5965 0.31518 1 79514 + 6119 30464 3720 3724 7658;7659 7658 -0.07307996341046419 ENPYVTDSA 9 Unmodified _ENPYVTDSA_ 0 0 0 REV__L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|2|1|sense REV__L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 498.2203063964844 2 498.219454 994.424355 NaN NaN NaN NaN NaN NaN NaN 29.798 1 33.527 33.027 34.027 3.7286 0 0 0 0.38784 1 4220 4220 3.5965 0 1 + 6120 30464 3720 3724 7660 7660 -0.07307996341046419 ENRFYIYVY 9 Unmodified _ENRFYIYVY_ 0 0 0 REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|8|1|sense REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 633.8115844726562 2 633.811313 1265.60807 0.41724 0.00026445 0.041912 2.6565E-05 0.45915 0.00029102 633.8112675129375 62.765 0.56177 65.934 65.578 66.14 3.1698 48 30 2 0 0 0 0.37599 1 14855 14855 9.3831 0 1 90520 + 6121 27339 3721 3725 7661 7661 -0.014106028395190151 ENRHALPLFT 10 Unmodified _ENRHALPLFT_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MSMS UPN48_class_I_Rep_2 6 599.3212890625 2 599.32238 1196.63021 NaN NaN NaN NaN NaN NaN NaN 66.126 1 69.612 69.112 70.112 3.4866 0 0 0 0.53105 1 15084 15084 2.9952 0.26005 1 6122 4334 3722 3726 7662 7662 0.03975621628865156 ENRMSFTI 8 Unmodified _ENRMSFTI_ 0 0 0 REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|61|2|anti-sense REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|61|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 499.7424011230469 2 499.242209 996.469866 -0.028223 -1.409E-05 1.0552 0.00052682 1.027 0.00051273 499.243805864062 26.513 0.82018 26.513 26.212 27.032 0 155 68 3 0 0 0 0.82752 2 3734 3734;3826 2.5775 0 1 82832 + 6123 27850 3723 3727 7663;7664 7663 -0.02851049359640001 ENRSLWEHQ 9 Unmodified _ENRSLWEHQ_ 0 0 0 ENSG00000120645|ENST00000538872|IQSEC3 ENSG00000120645|ENST00000538872|IQSEC3 ENSG00000120645|ENST00000538872|IQSEC3 MSMS UPN47_class_I_Rep_2 3 599.783447265625 2 599.783619 1197.55268 NaN NaN NaN NaN NaN NaN NaN 44.207 1 47.563 47.063 48.063 3.3556 0 0 0 0.39518 1 9196 9196 1.8442 0 1 6124 2330 3724 3728 7665 7665 -0.03819016307261336 ENSFYANF 8 Unmodified _ENSFYANF_ 0 0 0 REV__ENSG00000058453|ENST00000375541|CROCC REV__ENSG00000058453|ENST00000375541|CROCC MSMS UPN48_class_I_Rep_1 5 496.2099914550781 2 496.211432 990.408311 NaN NaN NaN NaN NaN NaN NaN 27.737 1 31.295 30.795 31.795 3.5571 0 0 0 0.40659 1 3618 3618 1.8442 0 1 + 6125 17713 3725 3729 7666 7666 -0.087276577872899 ENSGPLFVDVT 11 Unmodified _ENSGPLFVDVT_ 0 0 0 REV__ENSG00000214013|ENST00000318010|GANC REV__ENSG00000214013|ENST00000318010|GANC MSMS UPN47_class_I_Rep_1 2 589.2877807617188 2 589.290411 1176.56627 NaN NaN NaN NaN NaN NaN NaN 31.594 1 35.323 34.823 35.823 3.7293 0 0 0 0.38417 1 5323 5323 1.0715 0.27783 1 + 6126 21255 3726 3730 7667 7667 -0.014952033187228153 ENSGRHHLH 9 Unmodified _ENSGRHHLH_ 0 0 0 L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|95|1|sense L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|95|1|sense L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|95|1|sense MSMS UPN47_class_I_Rep_1 2 543.763671875 2 543.76302 1085.51149 NaN NaN NaN NaN NaN NaN NaN 72.933 1 76.313 75.813 76.813 3.3799 0 0 0 0.39326 1 17878 17878 2.3027 0 1 6127 14243 3727 3731 7668 7668 -0.027847325560969693 ENSSTKQW 8 Unmodified _ENSSTKQW_ 0 0 0 REV__L1PREC2_dup658|chr2:62767854-62771176:+|1.1357699653157147|0.0833457812901871|3.77|151.0|39|2|sense REV__L1PREC2_dup658|chr2:62767854-62771176:+|1.1357699653157147|0.0833457812901871|3.77|151.0|39|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.2275085449219 2 490.227613 978.440674 -0.11143 -5.4628E-05 0.36533 0.00017909 0.25389 0.00012447 490.22772527058135 32.932 0.89948 36.387 36.126 37.026 3.4547 127 70 2 0 0 0 0.82752 1 5823 5823 9.3831 0 1 350420 + 6128 30744 3728 3732 7669 7669 -0.049408703842800605 ENTHALSLY 9 Unmodified _ENTHALSLY_ 0 0 0 L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|78|1|anti-sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|78|1|anti-sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|78|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.2583618164062 2 524.258914 1046.50327 -0.02922 -1.5319E-05 0.043422 2.2764E-05 0.014202 7.4453E-06 524.76064347765 43.035 0.61359 46.722 46.424 47.038 3.6875 78 42 2 0 0 0 0.28552 1 8864 8864 14.838 0.25658 1 96024 6129 15421 3729 3733 7670 7670 -0.018117243160759244 ENTSVYLWK 9 Unmodified _ENTSVYLWK_ 0 0 0 L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.29052734375 2 570.290214 1138.56587 0.36239 0.00020667 -0.031376 -1.7893E-05 0.33102 0.00018878 570.2902372045153 73.53 1.6121 76.916 76.181 77.793 3.3861 453 138 5 0 0 0 0.16559 2 18032 18032;18144 24.021 24.021 1 5725200 6130 11595 3730 3734 7671;7672 7671 0.0021342175209611014 ENTSVYLWK 9 Unmodified _ENTSVYLWK_ 0 0 0 L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2903442382812 2 570.290214 1138.56587 0.44237 0.00025228 -0.14993 -8.5506E-05 0.29243 0.00016677 570.2901850782062 73.686 1.6077 76.991 76.375 77.983 3.3048 459 154 5 0 0 0 0.31407 1 18053 18053 13.042 2.2185 1 7372000 6131 11595 3730 3734 7673 7673 0.0021342175209611014 ENTSVYLWK 9 Unmodified _ENTSVYLWK_ 0 0 0 L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2904663085938 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.31407 1 18280 18280 13.042 2.2185 1 5554300 6132 11595 3730 3734 7674 7674 0.0021342175209611014 ENVVINHLFQ 10 Unmodified _ENVVINHLFQ_ 0 0 0 ENST00000375857.6_1_13:109445985-109707944:+|nuORF;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16 ENST00000375857.6_1_13:109445985-109707944:+|nuORF ENST00000375857.6_1_13:109445985-109707944:+|nuORF MSMS UPN48_class_I_Rep_1 5 404.8826599121094 3 404.8839 1211.62987 NaN NaN NaN NaN NaN NaN NaN 36.671 1 40.178 39.678 40.678 3.507 0 0 0 0.53105 1 6147 6147 0.77653 0 1 6133 868 3731 3735 7675 7675 0.03252201909026553 ENWEVEVTFR 10 Unmodified _ENWEVEVTFR_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1;ENST00000587561.1_1_18:57020403-57026476:-|nuORF ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MSMS UPN48_class_I_Rep_3 7 436.8790283203125 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 22.403 1 26.118 25.618 26.618 3.7144 0 0 0 0.53105 1 2281 2281 0.56317 0.10865 1 6134 1132 3732 3736 7676 7676 -0.026887096788186682 ENYRPLLK 8 Unmodified _ENYRPLLK_ 0 0 0 L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|133|3|sense L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|133|3|sense L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|133|3|sense MSMS UPN48_class_I_Rep_2 6 516.8054809570312 2 516.795466 1031.57638 NaN NaN NaN NaN NaN NaN NaN 40.796 1 44.541 44.041 45.041 3.7457 0 0 0 0.40501 1 7384 7384 3.9444 0 1 6135 14764 3733 3737 7677 7677 0.06185449197187154 ENYTIQQVT 9 Unmodified _ENYTIQQVT_ 0 0 0 REV__L1MDa_dup6142|chr18:9177827-9179521:-|1.4637887749870118|0.0755020095029789|4.28|151.0|43|2|sense REV__L1MDa_dup6142|chr18:9177827-9179521:-|1.4637887749870118|0.0755020095029789|4.28|151.0|43|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.2696533203125 2 548.269478 1094.5244 0.45743 0.00025079 0.61951 0.00033966 1.0769 0.00059045 548.2699363649792 49.74 0.85191 53.265 52.921 53.773 3.5246 124 52 3 0 0 0 0.41587 1 9995 9995 7.1017 0 1 550590 + 6136 27542 3734 3738 7678 7678 -0.01907759007212917 ENYTPYIP 8 Unmodified _ENYTPYIP_ 0 0 0 REV__ENSG00000124201.15,ZNFX1,chr20,-,I4.1,49264865,49266134|62|8.12|2|intron REV__ENSG00000124201.15,ZNFX1,chr20,-,I4.1,49264865,49266134|62|8.12|2|intron MSMS UPN47_class_I_Rep_1 2 498.7367248535156 2 498.737283 995.460012 NaN NaN NaN NaN NaN NaN NaN 19.231 1 22.812 22.312 23.312 3.5806 0 0 0 0.40738 1 1734 1734 0.79363 0 1 + 6137 18798 3735 3739 7679 7679 -0.03789914093374591 ENYWRKSYE 9 Unmodified _ENYWRKSYE_ 0 0 0 nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-3|ALKBH5 nc|ENSG00000091542|Q6P6C2-3|ALKBH5 MSMS UPN47_class_I_Rep_1 2 637.7962646484375 2 637.793652 1273.57275 NaN NaN NaN NaN NaN NaN NaN 45.991 1 49.691 49.191 50.191 3.6999 0 0 0 0.3967 1 9713 9713 1.4819 0.15237 1 6138 1376 3736 3740 7680 7680 -0.05309265367327498 EPAHPSSSSE 10 Unmodified _EPAHPSSSSE_ 0 0 0 REV__ENSG00000125850|ENST00000278780|OVOL2 REV__ENSG00000125850|ENST00000278780|OVOL2 MULTI-MSMS UPN46_class_I_Rep_3 1 514.219970703125 2 514.219985 1026.42542 -0.060306 -3.1011E-05 0.07395 3.8027E-05 0.013644 7.0158E-06 514.2199866141121 24.46 0.99898 24.46 24.087 25.086 0 253 103 4 0 0 0 0.31342 1 3218 3218 29.082 7.5446 1 623570 + 6139 18844 3737 3741 7681 7681 -0.08673781972129291 EPCECVYGQD 10 Unmodified _EPCECVYGQD_ 0 0 0 REV__ENST00000469006.1_1_2:241987790-241991533:+|nuORF REV__ENST00000469006.1_1_2:241987790-241991533:+|nuORF MSMS UPN48_class_I_Rep_2 6 571.7119140625 2 571.710082 1141.40561 NaN NaN NaN NaN NaN NaN NaN 18.022 1 21.674 21.174 22.174 3.6518 0 0 0 0.53105 1 1141 1141 1.4819 0 1 + 6140 19943 3738 3742 7682 7682 -0.15943617298762547 EPCHVQRHD 9 Unmodified _EPCHVQRHD_ 0 0 0 REV__L1MA3_dup2186|chr4:37579076-37582363:-|2.677657353147562|0.2113225362430357|3.66|151.0|49|2|sense REV__L1MA3_dup2186|chr4:37579076-37582363:-|2.677657353147562|0.2113225362430357|3.66|151.0|49|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.7514038085938 2 560.751264 1119.48798 0.46331 0.0002598 -0.21252 -0.00011917 0.25079 0.00014063 560.7509809216398 77.484 0.60357 81.085 80.752 81.356 3.6016 110 52 3 0 0 0 0.36392 1 18240 18240 10.074 0.6908 1 266700 + 6141 25004 3739 3743 7683 7683 -0.06698914384924137 EPCLASEQPGW 11 Unmodified _EPCLASEQPGW_ 0 0 0 REV__L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|170|3|anti-sense REV__L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|170|3|anti-sense MSMS UPN48_class_I_Rep_2 6 406.1821594238281 3 406.181618 1215.52302 NaN NaN NaN NaN NaN NaN NaN 17.014 1 20.665 20.165 21.165 3.6518 0 0 0 0.38417 1 928 928 1.2148 0.021489 1 + 6142 24989 3740 3744 7684 7684 -0.076117163676372 EPCNSVERAL 10 Unmodified _EPCNSVERAL_ 0 0 0 HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|144|3|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|144|3|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|144|3|anti-sense MSMS UPN47_class_I_Rep_1 2 559.2669067382812 2 559.268955 1116.52336 NaN NaN NaN NaN NaN NaN NaN 74.475 1 77.868 77.368 78.368 3.3937 0 0 0 0.53105 1 18331 18331 2.4985 0.65425 1 6143 8127 3741 3745 7685 7685 -0.030242966477771915 EPCSWPMLPF 10 Unmodified _EPCSWPMLPF_ 0 0 0 REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF MSMS UPN47_class_I_Rep_1 2 603.7716674804688 2 603.769745 1205.52494 NaN NaN NaN NaN NaN NaN NaN 46.475 1 50.175 49.675 50.675 3.6999 0 0 0 0.53105 1 9860 9860 1.6526 0.17072 1 + 6144 21758 3742 3746 7686 7686 -0.06960378883400153 EPDCSDCYCC 10 Unmodified _EPDCSDCYCC_ 0 0 0 L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.54248046875 2 569.153228 1136.2919 NaN NaN NaN NaN NaN NaN NaN 35.981 1 39.648 39.148 40.148 3.6667 0 0 0 0.53105 1 5900 5900 0 0 1 6145 15361 3743 3747 7687 7687 -0.2707917172767793 EPDYCECCCSC 11 Unmodified _EPDYCECCCSC_ 0 0 0 L1PBa_dup930|chr6:110688378-110689981:+|1.8749759236046173|0.0083681873154753|7.81|151.0|78|3|anti-sense L1PBa_dup930|chr6:110688378-110689981:+|1.8749759236046173|0.0083681873154753|7.81|151.0|78|3|anti-sense L1PBa_dup930|chr6:110688378-110689981:+|1.8749759236046173|0.0083681873154753|7.81|151.0|78|3|anti-sense MSMS UPN46_class_I_Rep_3 1 627.667236328125 2 627.665645 1253.31674 NaN NaN NaN NaN NaN NaN NaN 61.022 1 61.022 60.522 61.522 0 0 0 0 0.38417 1 13562 13562 0 0 1 6146 15397 3744 3748 7688 7688 -0.29978859916582223 EPEGWCCCDR 10 Unmodified _EPEGWCCCDR_ 0 0 0 REV__L1M4a1_dup289|chr2:31894078-31894787:+|1.1569426244022971|0.066802362276874|4.11|151.0|14|2|sense REV__L1M4a1_dup289|chr2:31894078-31894787:+|1.1569426244022971|0.066802362276874|4.11|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 599.2122802734375 2 599.209726 1196.4049 NaN NaN NaN NaN NaN NaN NaN 117.6 1 121.04 120.54 121.54 3.4425 0 0 0 0.53105 1 28977 28977 1.4819 0.68827 1 + 6147 24489 3745 3749 7689 7689 -0.18544735219461472 EPELMPSSDPV 11 Unmodified _EPELMPSSDPV_ 0 0 0 REV__ENSG00000214814|ENST00000522917|FER1L6 REV__ENSG00000214814|ENST00000522917|FER1L6 MSMS UPN47_class_I_Rep_1 2 600.7736206054688 2 600.776279 1199.538 NaN NaN NaN NaN NaN NaN NaN 60.146 1 63.544 63.044 64.044 3.3982 0 0 0 0.38417 1 14019 14019 2.9952 0.93549 1 + 6148 21268 3746 3750 7690 7690 -0.05378269290304161 EPELMPSSDPV 11 Unmodified _EPELMPSSDPV_ 0 0 0 REV__ENSG00000214814|ENST00000522917|FER1L6 REV__ENSG00000214814|ENST00000522917|FER1L6 MSMS UPN47_class_I_Rep_2 3 600.8076782226562 2 600.776279 1199.538 NaN NaN NaN NaN NaN NaN NaN 59.145 1 62.427 61.927 62.927 3.2818 0 0 0 0.38417 1 13745 13745 2.9952 0.93549 1 + 6149 21268 3746 3750 7691 7691 -0.05378269290304161 EPFFIRCI 8 Unmodified _EPFFIRCI_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MSMS UPN47_class_I_Rep_1 2 512.727783203125 2 512.767863 1023.52117 NaN NaN NaN NaN NaN NaN NaN 116.64 1 120.24 119.74 120.74 3.6036 0 0 0 0.40604 1 28892 28892 2.5775 0 1 6150 1436 3747 3751 7692 7692 0.010353194050708225 EPFIRQLRL 9 Unmodified _EPFIRQLRL_ 0 0 0 REV__nc|ENSG00000177302|Q13472-3|TOP3A REV__nc|ENSG00000177302|Q13472-3|TOP3A MULTI-MSMS UPN48_class_I_Rep_2 6 586.8525390625 2 586.35094 1170.68733 0.5167 0.00030297 0.25117 0.00014728 0.76787 0.00045024 586.8527093477431 64.433 0.5422 67.907 67.766 68.308 3.4743 71 39 2 0 0 0 0.2924 1 14578 14578 14.405 2.1647 1 238660 + 6151 20616 3748 3752 7693 7693 0.10881088905262004 EPGETSHR 8 Unmodified _EPGETSHR_ 0 0 0 REV__ENSG00000272031|ENST00000606888|ANKRD34A REV__ENSG00000272031|ENST00000606888|ANKRD34A MSMS UPN46_class_I_Rep_3 1 456.71258544921875 2 456.712131 911.409708 NaN NaN NaN NaN NaN NaN NaN 109.92 1 109.92 109.42 110.42 0 0 0 0 0.4044 1 27045 27045 4.756 2.4533 1 + 6152 21420 3749 3753 7694 7694 -0.0495402369851945 EPGPGPYVRAT 11 Unmodified _EPGPGPYVRAT_ 0 0 0 REV__THE1B-int_dup1065|chr4:42461661-42463215:+|1.1096033714822895|0.0447318986383701|4.63|151.0|55|1|anti-sense REV__THE1B-int_dup1065|chr4:42461661-42463215:+|1.1096033714822895|0.0447318986383701|4.63|151.0|55|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.292236328125 2 572.293288 1142.57202 -0.065175 -3.7299E-05 -0.13463 -7.7049E-05 -0.19981 -0.00011435 572.2931300032361 35.053 0.79919 38.739 38.474 39.273 3.6859 101 57 2 0 0 0 0.61292 2 6336 6336;6435 4.897 0.95262 1 199520 + 6153 32238 3750 3754 7695;7696 7695 0.006439399836153825 EPGPGPYVRAT 11 Unmodified _EPGPGPYVRAT_ 0 0 0 REV__THE1B-int_dup1065|chr4:42461661-42463215:+|1.1096033714822895|0.0447318986383701|4.63|151.0|55|1|anti-sense REV__THE1B-int_dup1065|chr4:42461661-42463215:+|1.1096033714822895|0.0447318986383701|4.63|151.0|55|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.7937622070312 2 572.293288 1142.57202 -0.099531 -5.6961E-05 -0.11465 -6.5613E-05 -0.21418 -0.00012257 572.2932213963009 35.617 0.86015 38.872 38.531 39.391 3.2547 107 56 3 0 0 0 0.52578 1 6686 6686 7.1017 1.3699 1 173070 + 6154 32238 3750 3754 7697 7697 0.006439399836153825 EPGSTEETRRL 11 Unmodified _EPGSTEETRRL_ 0 0 0 ENST00000453011.5_1_1:101491438-101538219:+|nuORF ENST00000453011.5_1_1:101491438-101538219:+|nuORF ENST00000453011.5_1_1:101491438-101538219:+|nuORF MSMS UPN48_class_I_Rep_2 6 637.8170166015625 2 637.820398 1273.62624 NaN NaN NaN NaN NaN NaN NaN 39.033 1 42.763 42.263 43.263 3.7297 0 0 0 0.38417 1 6878 6878 3.8763 1.1411 1 6155 6823 3751 3755 7698 7698 0.0003748734454802616 EPHIIDFLK 9 Unmodified _EPHIIDFLK_ 0 0 0 REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|3|1|sense REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 556.3111572265625 2 556.310949 1110.60735 0.51524 0.00028663 -0.24719 -0.00013752 0.26805 0.00014912 556.310586916662 66.743 0.49036 70.23 70.091 70.581 3.4866 30 28 2 0 0 0 0.46869 1 15289 15289 3.9444 0.3479 1 61069 + 6156 24323 3752 3756 7699 7699 0.05646602511410492 EPHKRQVISAF 11 Unmodified _EPHKRQVISAF_ 0 0 0 L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|135|3|sense L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|135|3|sense L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|135|3|sense MSMS UPN48_class_I_Rep_2 6 437.90899658203125 3 437.910449 1310.70952 NaN NaN NaN NaN NaN NaN NaN 46.327 1 50.076 49.576 50.576 3.7494 0 0 0 0.38417 1 9040 9040 2.4348 0.52841 1 6157 14201 3753 3757 7700 7700 0.06659268583030098 EPHVSSVLP 9 Unmodified _EPHVSSVLP_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS UPN47_class_I_Rep_3 4 482.75823974609375 2 482.758549 963.502546 -0.65156 -0.00031454 0.33993 0.0001641 -0.31163 -0.00015044 482.75865580608155 20.996 0.3026 24.346 24.245 24.547 3.3496 33 23 2 0 0 0 0.46869 1 2276 2276 3.9444 0 1 33569 6158 1458 3754 3758 7701 7701 0.019334810348709652 EPILYRPH 8 Unmodified _EPILYRPH_ 0 0 0 REV__ENSG00000149089|ENST00000395787|APIP REV__ENSG00000149089|ENST00000395787|APIP MSMS UPN48_class_I_Rep_3 7 512.7843017578125 2 512.782359 1023.55016 NaN NaN NaN NaN NaN NaN NaN 100.9 1 104.71 104.21 105.21 3.8153 0 0 0 0.40625 1 23874 23874 2.3027 0.82083 1 + 6159 19605 3755 3759 7702 7702 0.03933180025705951 EPKQVPLIP 9 Unmodified _EPKQVPLIP_ 0 0 0 REV__HERVH-int_dup5603|chr19:55009129-55012013:-|1.925840984170901|0.1754469633392039|3.46|151.0|69|3|sense REV__HERVH-int_dup5603|chr19:55009129-55012013:-|1.925840984170901|0.1754469633392039|3.46|151.0|69|3|sense MSMS UPN47_class_I_Rep_3 4 510.78704833984375 2 510.808042 1019.60153 NaN NaN NaN NaN NaN NaN NaN 43.509 1 46.751 46.251 47.251 3.2419 0 0 0 0.39326 1 9034 9034 2.3027 0.65011 1 + 6160 23695 3756 3760 7703 7703 0.09251503999769284 EPKRNKGSELK 11 Unmodified _EPKRNKGSELK_ 0 0 0 REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|47|2|sense REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|47|2|sense MSMS UPN46_class_I_Rep_3 1 643.3626098632812 2 643.364776 1284.715 NaN NaN NaN NaN NaN NaN NaN 64.65 1 64.65 64.15 65.15 0 0 0 0 0.38417 1 14564 14564 2.4985 0.65425 1 + 6161 29634 3757 3761 7704 7704 0.08402947374861469 EPKRNKGSELK 11 Unmodified _EPKRNKGSELK_ 0 0 0 REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|47|2|sense REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|47|2|sense MSMS UPN48_class_I_Rep_2 6 643.362548828125 2 643.364776 1284.715 NaN NaN NaN NaN NaN NaN NaN 59.177 1 62.675 62.175 63.175 3.4987 0 0 0 0.38417 1 12957 12957 2.4985 1.0166 1 + 6162 29634 3757 3761 7705 7705 0.08402947374861469 EPKTNEKKL 9 Unmodified _EPKTNEKKL_ 0 0 0 L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|11|2|sense L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|11|2|sense L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|11|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 543.8120727539062 2 543.811313 1085.60807 0.33013 0.00017953 1.0986 0.00059743 1.4287 0.00077696 543.8118316285284 39.75 0.42588 39.75 39.405 39.831 0 54 40 3 0 0 0 0.48846 1 7607 7607 1.8442 0.19162 1 195310 6163 13267 3758 3762 7706 7706 0.06869397160471635 EPKWFKVV 8 Unmodified _EPKWFKVV_ 0 0 0 REV__ENSG00000164294|ENST00000503787|GPX8 REV__ENSG00000164294|ENST00000503787|GPX8 MSMS UPN47_class_I_Rep_1 2 516.7978515625 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 112.78 1 116.35 115.85 116.85 3.572 0 0 0 0.40746 1 27810 27810 0.69038 0 1 + 6164 20049 3759 3763 7707 7707 0.06587538690882866 EPLDSWPGF 9 Unmodified _EPLDSWPGF_ 0 0 0 L1MA9_dup11667|chr11:94614609-94615557:-|3.0075303397528472|0.4001842457986159|2.91|151.0|31|3|sense L1MA9_dup11667|chr11:94614609-94615557:-|3.0075303397528472|0.4001842457986159|2.91|151.0|31|3|sense L1MA9_dup11667|chr11:94614609-94615557:-|3.0075303397528472|0.4001842457986159|2.91|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 524.2431030273438 2 524.242732 1046.47091 0.31251 0.00016383 -0.65542 -0.0003436 -0.34291 -0.00017977 524.242278080323 81.164 0.38098 84.726 84.51 84.891 3.5624 57 45 2 0 0 0 0.45688 1 19317 19317 4.756 0.42677 1 95780 6165 10096 3760 3764 7708 7708 -0.0504651171909245 EPLFAVLS 8 Unmodified _EPLFAVLS_ 0 0 0 REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF MSMS UPN47_class_I_Rep_3 4 438.2453308105469 2 438.247286 874.48002 NaN NaN NaN NaN NaN NaN NaN 44.36 1 47.604 47.104 48.104 3.2441 0 0 0 0.37214 1 9295 9295 16.942 4.7016 1 + 6166 22656 3761 3765 7709 7709 0.03775881637238854 EPLNRQIYE 9 Unmodified _EPLNRQIYE_ 0 0 0 REV__ENSG00000048544|ENST00000053468|MRPS10 REV__ENSG00000048544|ENST00000053468|MRPS10 MSMS UPN47_class_I_Rep_2 3 581.2977294921875 2 581.29857 1160.58259 NaN NaN NaN NaN NaN NaN NaN 61.404 1 64.665 64.165 65.165 3.2606 0 0 0 0.39598 1 14432 14432 1.6526 0 1 + 6167 17670 3762 3766 7710 7710 0.00871922638043543 EPLPQMPQAAQ 11 Unmodified _EPLPQMPQAAQ_ 0 0 0 REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1 REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1 MULTI-MSMS UPN48_class_I_Rep_1 5 605.2998657226562 2 605.300255 1208.58596 0.54931 0.0003325 0.70627 0.0004275 1.2556 0.00076 605.3005820038071 63.404 1.7312 66.862 66.043 67.774 3.4578 201 128 2 0 0 0 0.52578 4 14074 14074;14210;14252;14407 7.1017 0 1 191590 + 6168 18654 3763 3767 7711;7712;7713;7714 7711 -0.009991505795824196 EPLPQMPQAAQ 11 Unmodified _EPLPQMPQAAQ_ 0 0 0 REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1 REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1 MULTI-MSMS UPN48_class_I_Rep_2 6 605.3001098632812 2 605.300255 1208.58596 0.53255 0.00032236 0.62327 0.00037726 1.1558 0.00069962 605.300603601848 63.292 1.8102 66.766 65.879 67.689 3.4738 197 134 3 0 0 0 0.52578 2 14013 14013;14016 7.1017 0 1 302410 + 6169 18654 3763 3767 7715;7716 7715 -0.009991505795824196 EPLPQMPQAAQ 11 Unmodified _EPLPQMPQAAQ_ 0 0 0 REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1 REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1 MULTI-MSMS UPN48_class_I_Rep_3 7 605.2999267578125 2 605.300255 1208.58596 0.56543 0.00034226 0.64767 0.00039203 1.2131 0.00073429 605.3005056666468 63.309 1.5471 66.818 65.873 67.42 3.5091 225 116 3 0 0 0 0.52578 2 13935 13935;14298 7.1017 0 1 222450 + 6170 18654 3763 3767 7717;7718 7717 -0.009991505795824196 EPLRQDVTASY 11 Unmodified _EPLRQDVTASY_ 0 0 0 REV__nc|ENSG00000197170|O00232-2|PSMD12 REV__nc|ENSG00000197170|O00232-2|PSMD12 MSMS UPN47_class_I_Rep_1 2 639.799072265625 2 639.819867 1277.62518 NaN NaN NaN NaN NaN NaN NaN 54.849 1 58.35 57.85 58.85 3.5014 0 0 0 0.38417 1 12404 12404 4.897 2.1618 1 + 6171 21070 3764 3768 7719 7719 -0.002527270243717794 EPLYAVGR 8 Unmodified _EPLYAVGR_ 0 0 0 L1MA3_dup1784|chr3:142082484-142084916:+|2.7962772043068185|0.0196952889107618|7.15|151.0|19|1|sense L1MA3_dup1784|chr3:142082484-142084916:+|2.7962772043068185|0.0196952889107618|7.15|151.0|19|1|sense L1MA3_dup1784|chr3:142082484-142084916:+|2.7962772043068185|0.0196952889107618|7.15|151.0|19|1|sense MSMS UPN48_class_I_Rep_2 6 452.7472229003906 2 452.747985 903.481417 NaN NaN NaN NaN NaN NaN NaN 36.56 1 40.262 39.762 40.762 3.7021 0 0 0 0.40625 1 6154 6154 2.3027 0.24298 1 6172 9486 3765 3769 7720 7720 0.02581515726001271 EPMFTIVY 8 Unmodified _EPMFTIVY_ 0 0 0 ENST00000558890.5_1_15:99872165-99903471:+|nuORF;nc|ENSG00000168904|Q86X40-3|LRRC28;ENSG00000168904|ENST00000301981|LRRC28 ENST00000558890.5_1_15:99872165-99903471:+|nuORF ENST00000558890.5_1_15:99872165-99903471:+|nuORF MSMS UPN46_class_I_Rep_3 1 500.24749755859375 2 500.246429 998.478305 NaN NaN NaN NaN NaN NaN NaN 83.287 1 83.287 82.787 83.787 0 0 0 0 0.39408 1 19775 19775 10.183 0 1 6173 4393 3766 3770 7721 7721 -0.02099495443030719 EPMKHLYI 8 Unmodified _EPMKHLYI_ 0 0 0 REV__nc|ENSG00000147133|P21675-23|TAF1 REV__nc|ENSG00000147133|P21675-23|TAF1 MULTI-MSMS UPN47_class_I_Rep_3 4 515.7731323242188 2 515.773145 1029.53174 0.18904 9.7501E-05 0.12761 6.5816E-05 0.31664 0.00016332 515.7732441374615 58.072 0.44234 61.24 60.946 61.389 3.1681 54 30 2 0 0 0 0.82752 1 13395 13395 20.871 5.103 1 178280 + 6174 19559 3767 3771 7722 7722 0.018153020594809277 EPNELMERI 9 Unmodified _EPNELMERI_ 0 0 0 REV__nc|ENSG00000172819|P13631-3|RARG REV__nc|ENSG00000172819|P13631-3|RARG MSMS UPN48_class_I_Rep_1 5 565.7777099609375 2 565.779156 1129.54376 NaN NaN NaN NaN NaN NaN NaN 50.84 1 54.365 53.865 54.865 3.5246 0 0 0 0.37692 1 10424 10424 6.2058 1.3088 1 + 6175 20459 3768 3772 7723 7723 -0.015831259879860227 EPNTNGHYLY 10 Unmodified _EPNTNGHYLY_ 0 0 0 REV__ENST00000607647.5_1_7:135285632-135291519:+|nuORF REV__ENST00000607647.5_1_7:135285632-135291519:+|nuORF MSMS UPN47_class_I_Rep_3 4 604.2725219726562 2 604.272552 1206.53055 NaN NaN NaN NaN NaN NaN NaN 48.537 1 51.771 51.271 52.271 3.2345 0 0 0 0.53105 1 10561 10561 1.4819 0.15237 1 + 6176 19769 3769 3773 7724 7724 -0.06445240775701677 EPPETGVSHLY 11 Unmodified _EPPETGVSHLY_ 0 0 0 ENSG00000198173|ENST00000358047|FAM47C ENSG00000198173|ENST00000358047|FAM47C ENSG00000198173|ENST00000358047|FAM47C MULTI-MSMS UPN47_class_I_Rep_1 2 614.796142578125 2 614.79586 1227.57717 0.19169 0.00011785 0.094399 5.8036E-05 0.28609 0.00017589 614.795937075232 46.957 0.77948 50.652 50.338 51.118 3.6951 142 58 4 0 0 0 0.62008 1 10096 10096 2.9952 0 1 427940 6177 5417 3770 3774 7725 7725 -0.027518009444065683 EPPLSHALT 9 Unmodified _EPPLSHALT_ 0 0 0 HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|417|2|anti-sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|417|2|anti-sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|417|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.75872802734375 2 482.758549 963.502546 -0.65156 -0.00031454 0.33993 0.0001641 -0.31163 -0.00015044 482.75865580608155 20.996 0.3026 24.346 24.245 24.547 3.3496 33 23 2 0 0 0 0.41259 1 2329 2329 7.2892 7.2892 1 33569 6178 8031 3771 3775 7726 7726 0.01933481034848228 EPPLTKPE 8 Unmodified _EPPLTKPE_ 0 0 0 ENSG00000123576|ENST00000372588|ESX1 ENSG00000123576|ENST00000372588|ESX1 ENSG00000123576|ENST00000372588|ESX1 MSMS UPN48_class_I_Rep_1 5 455.74969482421875 2 455.74765 909.480748 NaN NaN NaN NaN NaN NaN NaN 23.748 1 27.313 26.813 27.813 3.5655 0 0 0 0.40643 1 2521 2521 2.0598 0.21551 1 6179 2430 3772 3776 7727 7727 0.02238676286287955 EPPSHEEYI 9 Unmodified _EPPSHEEYI_ 0 0 0 REV__ENSG00000182158|ENST00000330387|CREB3L2 REV__ENSG00000182158|ENST00000330387|CREB3L2 MSMS UPN47_class_I_Rep_3 4 550.74853515625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 65.57 1 68.75 68.25 69.25 3.1795 0 0 0 0.39326 1 15756 15756 2.3027 0.65011 1 + 6180 20748 3773 3777 7728 7728 -0.06355734415615188 EPPWHCGD 8 Unmodified _EPPWHCGD_ 0 0 0 ENSG00000100441|ENST00000553935|KHNYN ENSG00000100441|ENST00000553935|KHNYN ENSG00000100441|ENST00000553935|KHNYN MSMS UPN46_class_I_Rep_3 1 470.68353271484375 2 470.684527 939.354502 NaN NaN NaN NaN NaN NaN NaN 20.436 1 20.436 19.936 20.936 0 0 0 0 0.40746 1 2125 2125 0.69038 0 1 6181 1508 3774 3778 7729 7729 -0.11760153490649827 EPQAKNISV 9 Unmodified _EPQAKNISV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN47_class_I_Rep_3 4 493.2701110839844 2 493.269281 984.52401 -0.43616 -0.00021514 -0.086676 -4.2755E-05 -0.52283 -0.0002579 493.2692315895791 28.862 0.49372 32.196 31.964 32.458 3.3337 51 39 2 0 0 0 0.47493 2 4541 4541;4592 3.2813 1.6287 1 55614 6182 4341 3775 3779 7730;7731 7730 0.03112866063565889 EPQTRSPDCT 10 Unmodified _EPQTRSPDCT_ 0 0 0 ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3 ENSG00000105409|ENST00000648268|ATP1A3 ENSG00000105409|ENST00000648268|ATP1A3 MULTI-MSMS UPN47_class_I_Rep_2 3 567.2761840820312 2 567.24822 1132.48189 0.045749 2.5951E-05 -2.8083 -0.001593 -2.7625 -0.001567 567.2461549704261 35.222 0.08234 38.648 38.61 38.693 3.4253 5 4 2 0 0 0 0.56155 1 6456 6456 2.7352 0.15772 1 30552 6183 1736 3776 3780 7732 7732 -0.07905477407120998 EPRKADPK 8 Unmodified _EPRKADPK_ 0 0 0 REV__ENSG00000122482.21,ZNF644,chr1,-,I8.1,90935529,90937484|32|6.89|2|intron REV__ENSG00000122482.21,ZNF644,chr1,-,I8.1,90935529,90937484|32|6.89|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 470.76348876953125 2 470.764166 939.513779 -0.19197 -9.0372E-05 -0.23127 -0.00010887 -0.42324 -0.00019925 470.7640273206531 22.191 0.32873 22.191 22.017 22.346 0 45 34 2 0 0 0 0.82752 1 2607 2607 2.5775 0 1 56446 + 6184 18749 3777 3781 7733 7733 0.04160303128992382 EPRKQAGSLA 10 Unmodified _EPRKQAGSLA_ 0 0 0 ENSG00000213066|ENST00000366847|CEP43;ENST00000496181.1_1_6:167435938-167438429:+|nuORF;nc|ENSG00000272980|O95684-3|CEP43;ENST00000609590.1_1_6:167417751-167458021:+|nuORF;nc|ENSG00000272980|O95684-2|CEP43 ENSG00000213066|ENST00000366847|CEP43 ENSG00000213066|ENST00000366847|CEP43 MULTI-MSMS UPN47_class_I_Rep_1 2 528.7946166992188 2 528.793455 1055.57236 -0.10705 -5.6608E-05 0.21013 0.00011112 0.10308 5.4508E-05 528.793486868261 30.834 0.5421 34.579 34.338 34.88 3.7449 76 45 2 0 0 0 0.51021 1 5138 5138 10.8 2.8894 1 118610 6185 5580 3778 3782 7734 7734 0.04679359703482078 EPRNQSHARC 10 Unmodified _EPRNQSHARC_ 0 0 0 REV__L1MB4_dup3408|chr7:72904104-72904700:-|1.4477816700295538|0.1234863075272755|3.55|151.0|2|1|sense REV__L1MB4_dup3408|chr7:72904104-72904700:-|1.4477816700295538|0.1234863075272755|3.55|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.7811279296875 2 599.28072 1196.54689 0.41165 0.00024669 -1.0115 -0.00060617 -0.59985 -0.00035948 599.2798372096987 58.49 0.44156 61.907 61.709 62.15 3.4171 50 28 2 0 0 0 0.56118 1 13470 13470 2.9952 0.26005 1 87901 + 6186 25963 3779 3783 7735 7735 -0.043524380905864746 EPSAGRTEL 9 Unmodified _EPSAGRTEL_ 0 0 0 ENST00000521401.1_1_7:27150342-27166549:-|nuORF ENST00000521401.1_1_7:27150342-27166549:-|nuORF ENST00000521401.1_1_7:27150342-27166549:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 480.2431640625 2 480.243264 958.471974 0.014244 6.8406E-06 -0.15541 -7.4633E-05 -0.14116 -6.7792E-05 480.24324315790466 30.364 0.64416 30.364 30.105 30.749 0 76 50 2 0 0 0 0.45441 1 4892 4892 4.897 0.95262 1 123820 6187 7234 3780 3784 7736 7736 -0.008922973502080822 EPSEVFINR 9 Unmodified _EPSEVFINR_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS UPN48_class_I_Rep_1 5 545.7799682617188 2 545.780013 1089.54547 0.46135 0.00025179 -0.23632 -0.00012898 0.22503 0.00012281 545.7797879040908 39.574 0.86784 43.079 42.697 43.565 3.5048 184 86 3 0 0 0 0.35081 1 7101 7101 10.824 1.4408 1 409280 6188 2356 3781 3785 7737 7737 0.0042825109228488145 EPSEVFINR 9 Unmodified _EPSEVFINR_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS UPN48_class_I_Rep_2 6 545.7799682617188 2 545.780013 1089.54547 0.4393 0.00023976 -0.27588 -0.00015057 0.16342 8.919E-05 545.7797700859918 39.221 0.93428 42.951 42.654 43.588 3.7297 197 91 3 0 0 0 0.13244 2 6994 6969;6994 27.629 5.8742 1 445290 6189 2356 3781 3785 7738;7739 7739 0.0042825109228488145 EPSEVFINR 9 Unmodified _EPSEVFINR_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MSMS UPN48_class_I_Rep_2 6 545.779296875 2 545.780013 1089.54547 NaN NaN NaN NaN NaN NaN NaN 39.892 1 43.633 43.133 44.133 3.7413 0 0 0 0.29868 1 7127 7127 10.824 1.4408 1 6190 2356 3781 3785 7740 7740 0.0042825109228488145 EPSEVFINR 9 Unmodified _EPSEVFINR_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS UPN48_class_I_Rep_3 7 545.7799682617188 2 545.780013 1089.54547 0.38449 0.00020985 -0.29886 -0.00016311 0.085635 4.6738E-05 545.7798171386765 39.258 0.91637 42.914 42.631 43.547 3.6557 191 86 3 0 0 0 0.13244 2 6885 6885;6922 27.629 3.6082 1 401090 6191 2356 3781 3785 7741;7742 7741 0.0042825109228488145 EPSLKYIKH 9 Unmodified _EPSLKYIKH_ 0 0 0 REV__nc|ENSG00000142166|P17181-2|IFNAR1 REV__nc|ENSG00000142166|P17181-2|IFNAR1 MSMS UPN48_class_I_Rep_3 7 557.8175659179688 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 45.236 1 48.873 48.373 49.373 3.6372 0 0 0 0.39518 1 8639 8639 1.8442 0 1 + 6192 19397 3782 3786 7743 7743 0.06598004885677256 EPTHKKFSQC 10 Unmodified _EPTHKKFSQC_ 0 0 0 HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|70|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|70|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|70|2|sense MSMS UPN48_class_I_Rep_1 5 602.810546875 2 602.792598 1203.57064 NaN NaN NaN NaN NaN NaN NaN 28.97 1 32.52 32.02 33.02 3.5499 0 0 0 0.53105 1 3957 3957 3.5965 1.2938 1 6193 8321 3783 3787 7744 7744 -0.023000173767741217 EPTNQVASKF 10 Unmodified _EPTNQVASKF_ 0 0 0 REV__LTR43_dup339|chr19:21442050-21442665:-|1.3793252842693309|0.4910537442065089|1.49|149.0|26|1|anti-sense REV__LTR43_dup339|chr19:21442050-21442665:-|1.3793252842693309|0.4910537442065089|1.49|149.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.7864990234375 2 560.785296 1119.55604 0.50323 0.00028221 0.15515 8.7004E-05 0.65838 0.00036921 560.7852678832363 50.348 1.0209 53.574 53.142 54.163 3.2262 96 56 3 0 0 0 0.56033 1 11238 11238 3.5965 0.8613 1 152320 + 6194 30926 3784 3788 7745 7745 0.0010423374671972852 EPVEVVAPR 9 Unmodified _EPVEVVAPR_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN48_class_I_Rep_1 5 498.281494140625 2 498.279649 994.544745 0.22916 0.00011418 -0.15787 -7.8664E-05 0.071283 3.5519E-05 498.27958033549174 35.546 0.65276 39.057 38.768 39.421 3.5101 96 64 2 0 0 0 0.48846 1 5751 5751 1.8442 0.19162 1 160570 6195 3325 3785 3789 7746 7746 0.04725456443236453 EPVIFCFP 8 Unmodified _EPVIFCFP_ 0 0 0 L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|73|2|anti-sense L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|73|2|anti-sense L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|73|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3266906738281 2 476.235864 950.457176 NaN NaN NaN NaN NaN NaN NaN 23.061 1 23.061 22.561 23.561 0 0 0 0 0.40581 1 2834 2834 2.8892 0 1 6196 15274 3786 3790 7747 7747 -0.020034607518937264 EPVKKLSL 8 Unmodified _EPVKKLSL_ 0 0 0 REV__nc|ENSG00000091140|P09622-2|DLD REV__nc|ENSG00000091140|P09622-2|DLD MULTI-MSMS UPN48_class_I_Rep_1 5 457.2901306152344 2 457.289485 912.564418 0.059938 2.7409E-05 0.012391 5.6661E-06 0.072329 3.3075E-05 457.2894433126886 79.098 0.31255 82.633 82.479 82.791 3.5352 53 35 2 0 0 0 0.82752 1 18910 18910 14.838 2.3067 1 126660 + 6197 18017 3787 3791 7748 7748 0.10463832454001931 EPVLRPPPPP 10 Unmodified _EPVLRPPPPP_ 0 0 0 ENST00000366671.7_1_2:63282997-63283414:+|nuORF ENST00000366671.7_1_2:63282997-63283414:+|nuORF ENST00000366671.7_1_2:63282997-63283414:+|nuORF MSMS UPN48_class_I_Rep_2 6 549.8193969726562 2 549.818941 1097.62333 NaN NaN NaN NaN NaN NaN NaN 45.187 1 48.945 48.445 49.445 3.7579 0 0 0 0.53105 1 8695 8695 2.9952 0.49676 1 6198 6337 3788 3792 7749 7749 0.07842308748331561 EPVLRPPPPP 10 Unmodified _EPVLRPPPPP_ 0 0 0 ENST00000366671.7_1_2:63282997-63283414:+|nuORF ENST00000366671.7_1_2:63282997-63283414:+|nuORF ENST00000366671.7_1_2:63282997-63283414:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 549.8193969726562 2 549.818941 1097.62333 0.34216 0.00018812 0.64141 0.00035266 0.98356 0.00054078 549.8190947262269 45.424 0.094124 49.061 49.001 49.095 3.6369 9 5 2 0 0 0 0.52562 1 8697 8697 8.7454 1.4562 1 287860 6199 6337 3788 3792 7750 7750 0.07842308748331561 EPVPDLSWI 9 Unmodified _EPVPDLSWI_ 0 0 0 MER77_dup1083|chr16:85705248-85705761:+|1.3446280517011844|0.0472633484273714|4.83|151.0|6|1|sense MER77_dup1083|chr16:85705248-85705761:+|1.3446280517011844|0.0472633484273714|4.83|151.0|6|1|sense MER77_dup1083|chr16:85705248-85705761:+|1.3446280517011844|0.0472633484273714|4.83|151.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 528.2738647460938 2 528.274032 1054.53351 0.41154 0.0002174 -0.15207 -8.0336E-05 0.25947 0.00013707 528.2738961064075 86.907 0.10918 90.287 90.208 90.317 3.3801 21 14 2 0 0 0 0.11705 1 21771 21771 10.824 0.75 1 99546 6200 16212 3789 3793 7751 7751 0.008426343491009902 EPVRRRRRLVL 11 Unmodified _EPVRRRRRLVL_ 0 0 0 ENST00000562977.1_1_16:28962332-28970171:+|nuORF;ENST00000565752.5_1_16:28962332-28963698:+|nuORF;ENSG00000176953|ENST00000320805|NFATC2IP ENST00000562977.1_1_16:28962332-28970171:+|nuORF ENST00000562977.1_1_16:28962332-28970171:+|nuORF MSMS UPN47_class_I_Rep_1 2 483.9805908203125 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 44.279 1 47.974 47.474 48.474 3.6951 0 0 0 0.38417 1 9191 9191 0.50596 0 1 6201 4774 3790 3794 7752 7752 0.2099310092187352 EPVRRRRRLVL 11 Unmodified _EPVRRRRRLVL_ 0 0 0 ENST00000562977.1_1_16:28962332-28970171:+|nuORF;ENST00000565752.5_1_16:28962332-28963698:+|nuORF;ENSG00000176953|ENST00000320805|NFATC2IP ENST00000562977.1_1_16:28962332-28970171:+|nuORF ENST00000562977.1_1_16:28962332-28970171:+|nuORF MSMS UPN47_class_I_Rep_1 2 483.9808654785156 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 90.712 1 94.402 93.902 94.902 3.6899 0 0 0 0.38417 1 22655 22655 0.094841 0.094841 1 6202 4774 3790 3794 7753 7753 0.2099310092187352 EPWPLLSPS 9 Unmodified _EPWPLLSPS_ 0 0 0 REV__L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|249|2|anti-sense REV__L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|249|2|anti-sense MSMS UPN47_class_I_Rep_2 3 513.2682495117188 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 80.004 1 83.373 82.873 83.873 3.3694 0 0 0 0.38639 1 19933 19933 3.9444 0.3479 1 + 6203 29696 3791 3795 7754 7754 0.011666516946661432 EPWVVDAKHSA 11 Unmodified _EPWVVDAKHSA_ 0 0 0 REV__ENST00000559000.5_1_15:56945523-56946605:-|nuORF REV__ENST00000559000.5_1_15:56945523-56946605:-|nuORF MSMS UPN48_class_I_Rep_2 6 619.812744140625 2 619.811845 1237.60914 NaN NaN NaN NaN NaN NaN NaN 48.338 1 52.074 51.574 52.574 3.7361 0 0 0 0.38417 1 9647 9647 2.7352 1.0826 1 + 6204 23007 3792 3796 7755 7755 -0.0001638847061258275 EPWWRRHWRKS 11 Unmodified _EPWWRRHWRKS_ 0 0 0 L1P3_dup2753|chr12:112155600-112159649:-|2.995373467987048|0.1372113213261341|4.45|151.0|152|1|anti-sense L1P3_dup2753|chr12:112155600-112159649:-|2.995373467987048|0.1372113213261341|4.45|151.0|152|1|anti-sense L1P3_dup2753|chr12:112155600-112159649:-|2.995373467987048|0.1372113213261341|4.45|151.0|152|1|anti-sense MSMS UPN46_class_I_Rep_3 1 542.3479614257812 3 541.951642 1622.8331 NaN NaN NaN NaN NaN NaN NaN 61.942 1 61.942 61.442 62.442 0 0 0 0 0.38417 1 13820 13820 0.08335 0.08335 1 6205 13539 3793 3797 7756 7756 0.04659364473991445 EQEIKEFY 8 Unmodified _EQEIKEFY_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|14|1|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.2613525390625 2 543.261122 1084.50769 0.41796 0.00022706 -0.062451 -3.3927E-05 0.35551 0.00019314 543.2609190961231 63.078 0.79757 66.437 66.121 66.918 3.3595 104 63 2 0 0 0 0.82752 2 14944 14875;14944 34.102 3.4659 1 270410 + 6206 25119 3794 3798 7757;7758 7758 -0.03118259893199138 EQEIKEFY 8 Unmodified _EQEIKEFY_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|14|1|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 543.2613525390625 2 543.261122 1084.50769 0.38399 0.00020861 0.0039412 2.1411E-06 0.38793 0.00021075 543.2610186910604 63.315 0.8504 66.571 66.176 67.026 3.2558 121 65 2 0 0 0 0.82752 1 15033 15033 42.095 0.25493 1 340570 + 6207 25119 3794 3798 7759 7759 -0.03118259893199138 EQEIKEFY 8 Unmodified _EQEIKEFY_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|14|1|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.2613525390625 2 543.261122 1084.50769 0.40397 0.00021946 0.24923 0.0001354 0.6532 0.00035486 543.2610920150267 63.38 0.90326 66.55 66.044 66.947 3.1698 109 67 2 0 0 0 0.82752 2 15151 15114;15151 34.102 3.4659 1 265740 + 6208 25119 3794 3798 7760;7761 7761 -0.03118259893199138 EQERGGRYQI 10 Unmodified _EQERGGRYQI_ 0 0 0 MSTB1_dup2995|chr10:87241102-87241517:-|1.7154775826828814|0.3652987511709344|2.23|148.0|25|3|anti-sense MSTB1_dup2995|chr10:87241102-87241517:-|1.7154775826828814|0.3652987511709344|2.23|148.0|25|3|anti-sense MSTB1_dup2995|chr10:87241102-87241517:-|1.7154775826828814|0.3652987511709344|2.23|148.0|25|3|anti-sense MSMS UPN48_class_I_Rep_3 7 618.310302734375 2 618.31 1234.60545 NaN NaN NaN NaN NaN NaN NaN 53.237 1 56.82 56.32 57.32 3.5836 0 0 0 0.53105 1 11075 11075 1.3295 0.13619 1 6209 16582 3795 3799 7762 7762 -0.002470582444630054 EQGRRVPLS 9 Unmodified _EQGRRVPLS_ 0 0 0 REV__nc|ENSG00000215187|A8MTA8-2|CIMIP2B REV__nc|ENSG00000215187|A8MTA8-2|CIMIP2B MULTI-MSMS UPN48_class_I_Rep_3 7 521.2942504882812 2 521.293622 1040.57269 0.39889 0.00020794 1.568 0.00081738 1.9669 0.0010253 521.2943381655763 107.81 0.11105 111.5 111.46 111.58 3.6813 10 8 2 0 0 0 0.41259 1 25453 25453 7.2892 1.0834 1 3295600 + 6210 21273 3796 3800 7763 7763 0.054027794233206805 EQIDLLQQY 9 Unmodified _EQIDLLQQY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS UPN46_class_I_Rep_3 1 575.2933349609375 2 575.292953 1148.57135 0.45015 0.00025897 -0.087009 -5.0056E-05 0.36314 0.00020891 575.2927529099128 71.717 0.21051 71.717 71.611 71.822 0 24 18 2 0 0 0 0.43982 1 16556 16556 5.7319 0.97584 1 212350 6211 1579 3797 3801 7764 7764 0.003011005439248038 EQIGLITR 8 Unmodified _EQIGLITR_ 0 0 0 REV__ENST00000366392.2_22:39129283-39129482:+|nuORF REV__ENST00000366392.2_22:39129283-39129482:+|nuORF MSMS UPN48_class_I_Rep_1 5 465.2740478515625 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 42.412 1 45.92 45.42 46.42 3.5079 0 0 0 0.39068 1 7841 7841 11.495 0.6952 1 + 6212 21915 3798 3802 7765 7765 0.06705473788804284 EQIGLITR 8 Unmodified _EQIGLITR_ 0 0 0 REV__ENST00000366392.2_22:39129283-39129482:+|nuORF REV__ENST00000366392.2_22:39129283-39129482:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 465.274169921875 2 465.274367 928.53418 0.12897 6.0005E-05 -0.50516 -0.00023504 -0.37619 -0.00017503 465.2740786154163 42.076 0.5564 45.834 45.496 46.052 3.7579 71 56 2 0 0 0 0.82752 1 7750 7750 12.241 0.60036 1 108210 + 6213 21915 3798 3802 7766 7766 0.06705473788804284 EQIGLITR 8 Unmodified _EQIGLITR_ 0 0 0 REV__ENST00000366392.2_22:39129283-39129482:+|nuORF REV__ENST00000366392.2_22:39129283-39129482:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 465.27435302734375 2 465.274367 928.53418 0.10909 5.0758E-05 -0.32201 -0.00014982 -0.21291 -9.9063E-05 465.2741749589429 42.174 0.56807 45.816 45.542 46.11 3.6415 84 52 2 0 0 0 0.82752 1 7715 7715 16.149 0.90062 1 113670 + 6214 21915 3798 3802 7767 7767 0.06705473788804284 EQIMKPLK 8 Unmodified _EQIMKPLK_ 0 0 0 REV__L1MB8_dup15674|chr20:21317851-21319789:-|2.3863716323306075|0.0668452328556376|5.16|151.0|51|2|sense REV__L1MB8_dup15674|chr20:21317851-21319789:-|2.3863716323306075|0.0668452328556376|5.16|151.0|51|2|sense MSMS UPN48_class_I_Rep_3 7 493.7897033691406 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.56 117.06 118.06 3.6511 0 0 0 0.40625 1 27103 27103 2.3027 1.5091 1 + 6215 26383 3799 3803 7768 7768 0.06967875093573639 EQIPVLLIYGF 11 Unmodified _EQIPVLLIYGF_ 0 0 0 RAB32|p.L211Afs*42|1|0.06|ENSG00000118508|chr6:146554554-146554555|-/A|frameshift_variant RAB32|p.L211Afs*42|1|0.06|ENSG00000118508|chr6:146554554-146554555|-/A|frameshift_variant RAB32|p.L211Afs*42|1|0.06|ENSG00000118508|chr6:146554554-146554555|-/A|frameshift_variant MSMS UPN48_class_I_Rep_1 5 646.366455078125 2 646.368464 1290.72238 NaN NaN NaN NaN NaN NaN NaN 51.51 1 55.033 54.533 55.533 3.5227 0 0 0 0.38417 1 10631 10631 1.4819 0.28856 1 6216 16901 3800 3804 7769 7769 0.08864286922562314 EQKIKHHI 8 Unmodified _EQKIKHHI_ 0 0 0 L1PA7_dup7908|chrX:56145769-56146725:+|1.2222542079933605|0.0154812299426441|6.3|148.0|14|2|sense L1PA7_dup7908|chrX:56145769-56146725:+|1.2222542079933605|0.0154812299426441|6.3|148.0|14|2|sense L1PA7_dup7908|chrX:56145769-56146725:+|1.2222542079933605|0.0154812299426441|6.3|148.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 516.8013305664062 2 516.801083 1031.58761 NaN NaN NaN NaN NaN NaN NaN 30.491 1 30.491 29.991 30.991 0 0 0 0 0.40472 1 4973 4973 4.3292 0 1 6217 14889 3801 3805 7770 7770 0.07308271291321944 EQKRVNPL 8 Unmodified _EQKRVNPL_ 0 0 0 MLT1A1_dup633|chr2:68745696-68746112:-|1.1758182751148396|0.0135185422013027|6.44|151.0|20|1|anti-sense MLT1A1_dup633|chr2:68745696-68746112:-|1.1758182751148396|0.0135185422013027|6.44|151.0|20|1|anti-sense MLT1A1_dup633|chr2:68745696-68746112:-|1.1758182751148396|0.0135185422013027|6.44|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_2 3 492.28765869140625 2 492.285266 982.555979 NaN NaN NaN NaN NaN NaN NaN 71.305 1 74.594 74.094 75.094 3.2899 0 0 0 0.40404 1 17418 17418 5.2307 0 1 6218 16266 3802 3806 7771 7771 0.06400278537375925 EQLKRHLR 8 Unmodified _EQLKRHLR_ 0 0 0 nc|ENSG00000157429|P17023-2|ZNF19;ENSG00000157429|ENST00000288177|ZNF19 nc|ENSG00000157429|P17023-2|ZNF19 nc|ENSG00000157429|P17023-2|ZNF19 MSMS UPN46_class_I_Rep_3 1 540.3214721679688 2 540.325257 1078.63596 NaN NaN NaN NaN NaN NaN NaN 35.704 1 35.704 35.204 36.204 0 0 0 0 0.40738 1 6532 6532 0.79363 0 1 6219 3762 3803 3807 7772 7772 0.09978764931202022 EQLLEVVQHVC 11 Unmodified _EQLLEVVQHVC_ 0 0 0 REV__nc|ENSG00000198682|O95340|PAPSS2 REV__nc|ENSG00000198682|O95340|PAPSS2 MSMS UPN47_class_I_Rep_1 2 432.88519287109375 3 432.892067 1295.65437 NaN NaN NaN NaN NaN NaN NaN 53.881 1 57.409 56.909 57.909 3.5278 0 0 0 0.37931 1 12109 12109 3.5927 0.52041 1 + 6220 21139 3804 3808 7773 7773 0.018370940002569114 EQLLIDPH 8 Unmodified _EQLLIDPH_ 0 0 0 REV__ENST00000260356.5_1_15:39887915-39888029:+|nuORF REV__ENST00000260356.5_1_15:39887915-39888029:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 482.7585144042969 2 482.758549 963.502546 -0.29055 -0.00014027 -0.078997 -3.8137E-05 -0.36955 -0.0001784 482.7584980572398 36.697 0.62811 40.367 40.089 40.717 3.6692 82 52 2 0 0 0 0.82752 1 6811 6811 2.3027 0 1 99298 + 6221 21552 3805 3809 7774 7774 0.01933481034848228 EQPLQPNG 8 Unmodified _EQPLQPNG_ 0 0 0 REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|35|3|sense REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|35|3|sense MSMS UPN46_class_I_Rep_3 1 441.71954345703125 2 441.719424 881.424296 NaN NaN NaN NaN NaN NaN NaN 15.983 1 15.983 15.483 16.483 0 0 0 0 0.40625 1 1009 1009 2.3027 0.4585 1 + 6222 28571 3806 3810 7775 7775 -0.021159515503882176 EQQDAYEFF 9 Unmodified _EQQDAYEFF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS UPN47_class_I_Rep_2 3 588.7460327148438 2 588.745836 1175.47712 0.4948 0.00029131 0.12843 7.5615E-05 0.62324 0.00036693 588.7458527911546 79.256 1.0205 82.611 82.255 83.275 3.3554 197 105 2 0 0 0 0.18929 4 19672 19672;19746;19784;19821 21.747 21.747 1 813230 6223 3927 3807 3811 7776;7777;7778;7779 7776 -0.10360038278236061 EQQIIDLNY 9 Unmodified _EQQIIDLNY_ 0 0 0 REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 567.7846069335938 2 568.285128 1134.5557 0.54043 0.00030712 0.35529 0.00020191 0.89572 0.00050902 568.2854415669401 52.838 0.52513 56.448 56.316 56.841 3.6098 50 31 2 0 0 0 0.091029 1 11021 11021 21.747 2.4897 1 135520 + 6224 18560 3808 3812 7780 7780 -0.006191859731416116 EQREKEMV 8 Unmodified _EQREKEMV_ 0 0 0 ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;ENSG00000111011|ENST00000331738|RSRC2 ENST00000392442.6_1_12:122990076-122998315:-|nuORF ENST00000392442.6_1_12:122990076-122998315:-|nuORF MSMS UPN48_class_I_Rep_2 6 524.7587890625 2 524.758223 1047.50189 NaN NaN NaN NaN NaN NaN NaN 113.46 1 117.12 116.62 117.62 3.663 0 0 0 0.40643 1 27081 27081 2.0598 0 1 6225 1958 3809 3813 7781 7781 -0.019956816764988616 EQREKVPEEYF 11 Unmodified _EQREKVPEEYF_ 0 0 0 nc|ENSG00000163249|Q8N7R7-2|CCNYL1 nc|ENSG00000163249|Q8N7R7-2|CCNYL1 nc|ENSG00000163249|Q8N7R7-2|CCNYL1 MULTI-MSMS UPN46_class_I_Rep_3 1 485.2369079589844 3 485.236779 1452.68851 0.15499 7.5209E-05 0.48207 0.00023392 0.63706 0.00030913 485.23698891754697 36.196 0.62902 36.196 35.717 36.346 0 89 47 2 0 0 0 0.64031 1 6654 6654 4.1166 0.52957 1 327710 6226 16734 3810 3814 7782 7782 -0.019727863071466345 EQRKNGNFK 9 Unmodified _EQRKNGNFK_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS UPN47_class_I_Rep_2 3 560.799072265625 2 560.796529 1119.5785 0.42506 0.00023837 2.4891 0.0013959 2.9142 0.0016343 560.7975874363605 71.91 0.35194 75.2 75.021 75.373 3.2899 34 30 2 0 0 0 0.30034 1 17605 17605 13.906 0.86358 1 60127 6227 1314 3811 3815 7783 7783 0.023498779349893084 EQRLRDEWRLS 11 Unmodified _EQRLRDEWRLS_ 0 0 0 REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.5951232910156 3 496.595301 1486.76407 -0.31306 -0.00015546 -0.034972 -1.7367E-05 -0.34803 -0.00017283 496.5953718236962 22.258 0.77717 25.933 25.648 26.425 3.6749 176 73 3 0 0 0 0.66452 1 2681 2681 1.9275 1.5192 1 132110 + 6228 16935 3812 3816 7784 7784 0.040162356637893026 EQRLRDEWRLS 11 Unmodified _EQRLRDEWRLS_ 0 0 0 REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 496.7435607910156 3 496.595301 1486.76407 -0.31146 -0.00015467 0.13353 6.6309E-05 -0.17793 -8.8361E-05 496.5954420484518 22.953 0.43348 26.657 26.454 26.888 3.7042 57 38 2 0 0 0 22.551 1 2711 2711 3.5927 2.3778 1 75131 + 6229 16935 3812 3816 7785 7785 0.040162356637893026 EQRLRDEWRLS 11 Unmodified _EQRLRDEWRLS_ 0 0 0 REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense MSMS UPN47_class_I_Rep_2 3 496.5953063964844 3 496.595301 1486.76407 NaN NaN NaN NaN NaN NaN NaN 22.874 1 26.318 25.818 26.818 3.4447 0 0 0 0.38417 1 2788 2788 3.5927 2.263 1 + 6230 16935 3812 3816 7786 7786 0.040162356637893026 EQRLRDEWRLS 11 Unmodified _EQRLRDEWRLS_ 0 0 0 REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 497.2356262207031 3 496.595301 1486.76407 -0.14621 -7.2608E-05 -0.059662 -2.9628E-05 -0.20587 -0.00010224 496.595287986951 22.746 0.66713 26.191 25.891 26.558 3.4447 92 60 2 0 0 0 22.551 1 2812 2812 3.5927 2.263 1 85244 + 6231 16935 3812 3816 7787 7787 0.040162356637893026 EQRLRDEWRLS 11 Unmodified _EQRLRDEWRLS_ 0 0 0 REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense REV__AluJb_dup2910|chr1:31922587-31922921:-|1.1992421277579874|0.1189727586111407|3.33|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 496.5954284667969 3 496.595301 1486.76407 -0.51187 -0.00025419 0.28291 0.00014049 -0.22896 -0.0001137 496.59549910506945 23.055 0.92064 26.405 26.132 27.053 3.3503 122 74 2 0 0 0 0.67649 1 2932 2932 0.84494 0.33899 1 104990 + 6232 16935 3812 3816 7788 7788 0.040162356637893026 EQRYPKWQ 8 Unmodified _EQRYPKWQ_ 0 0 0 REV__L1MA3_dup5497|chrX:97005839-97007750:-|1.032282572902376|0.0206790410450002|5.64|150.0|45|3|sense REV__L1MA3_dup5497|chrX:97005839-97007750:-|1.032282572902376|0.0206790410450002|5.64|150.0|45|3|sense MSMS UPN48_class_I_Rep_2 6 567.78759765625 2 567.788173 1133.56179 NaN NaN NaN NaN NaN NaN NaN 27.495 1 31.127 30.627 31.627 3.6311 0 0 0 0.40643 1 3650 3650 2.0598 0.21551 1 + 6233 25053 3813 3817 7789 7789 0.0003537704901646066 EQSCFWWW 8 Unmodified _EQSCFWWW_ 0 0 0 REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|160|2|anti-sense REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|160|2|anti-sense MSMS UPN47_class_I_Rep_3 4 586.2860107421875 2 586.236927 1170.4593 NaN NaN NaN NaN NaN NaN NaN 54.296 1 57.481 56.981 57.981 3.1856 0 0 0 0.40581 1 12317 12317 2.8892 1.045 1 + 6234 24554 3814 3818 7790 7790 -0.11911032014086231 EQSCFWWW 8 Unmodified _EQSCFWWW_ 0 0 0 REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|160|2|anti-sense REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|160|2|anti-sense MSMS UPN48_class_I_Rep_1 5 586.2384643554688 2 586.236927 1170.4593 NaN NaN NaN NaN NaN NaN NaN 111.58 1 115.21 114.71 115.71 3.6326 0 0 0 0.40738 1 27068 27068 0.79363 0.10326 1 + 6235 24554 3814 3818 7791 7791 -0.11911032014086231 EQSEHIQIY 9 Unmodified _EQSEHIQIY_ 0 0 0 Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|98|1|anti-sense Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|98|1|anti-sense Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|98|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.2760009765625 2 573.774928 1145.5353 0.046065 2.6431E-05 -0.6577 -0.00037737 -0.61163 -0.00035094 574.2760317319152 43.795 0.48959 47.49 47.233 47.722 3.6951 52 29 2 0 0 0 0.36392 1 9079 9079 10.074 0.72649 1 71854 6236 33166 3815 3819 7792 7792 -0.031643566329421446 EQSEHIQIY 9 Unmodified _EQSEHIQIY_ 0 0 0 Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|98|1|anti-sense Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|98|1|anti-sense Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|98|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 573.774928 1145.5353 0.046065 2.6431E-05 -0.6577 -0.00037737 -0.61163 -0.00035094 574.2760317319152 43.795 0.48959 47.49 47.233 47.722 3.6951 -0.070501 1.8796E-05 NaN 10.074 52 29 2 NaN NaN NaN NaN 0 NaN NaN 0 71854 6237 33166 3815 3819 -0.031643566329421446 EQSHSTDTTL 10 Unmodified _EQSHSTDTTL_ 0 0 0 L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|86|3|sense L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|86|3|sense L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|86|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.7513427734375 2 559.75165 1117.48875 0.44797 0.00025075 -1.3024 -0.00072902 -0.85443 -0.00047827 560.2524889240489 71.441 0.56909 74.66 74.454 75.023 3.2188 61 44 2 0 0 0 0.56333 1 17605 17605 1.4819 1.4819 1 105530 6238 11186 3816 3820 7793 7793 -0.06529841254905477 EQTILDGSAFG 11 Unmodified _EQTILDGSAFG_ 0 0 0 ENST00000338272.8_1_1:109638293-109638542:+|nuORF ENST00000338272.8_1_1:109638293-109638542:+|nuORF ENST00000338272.8_1_1:109638293-109638542:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.275146484375 2 569.274761 1136.53497 0.39862 0.00022693 0.010425 5.9346E-06 0.40905 0.00023286 569.2746090128721 64.236 0.50468 67.492 67.252 67.757 3.2556 54 38 2 0 0 0 0.37961 1 15297 15297 10.8 1.2555 1 102550 6239 6216 3817 3821 7794 7794 -0.02783776352816858 EQTILDGSAFG 11 Unmodified _EQTILDGSAFG_ 0 0 0 ENST00000338272.8_1_1:109638293-109638542:+|nuORF ENST00000338272.8_1_1:109638293-109638542:+|nuORF ENST00000338272.8_1_1:109638293-109638542:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 569.274761 1136.53497 0.39862 0.00022693 0.010425 5.9346E-06 0.40905 0.00023286 569.2746090128721 64.236 0.50468 67.492 67.252 67.757 3.2556 0.028954 -0.00013655 NaN 10.8 54 38 2 NaN NaN NaN NaN 0 NaN NaN 0 102550 6240 6216 3817 3821 -0.02783776352816858 EQVIVSHSSF 10 Unmodified _EQVIVSHSSF_ 0 0 0 nc|ENSG00000133687|Q8IUR5-3|TMTC1;ENST00000553189.5_1_12:29689066-29935873:-|nuORF nc|ENSG00000133687|Q8IUR5-3|TMTC1 nc|ENSG00000133687|Q8IUR5-3|TMTC1 MSMS UPN48_class_I_Rep_3 7 566.7891845703125 2 566.785296 1131.55604 NaN NaN NaN NaN NaN NaN NaN 48.962 1 52.591 52.091 53.091 3.6291 0 0 0 0.53105 1 9778 9778 5.7319 2.4505 1 6241 7411 3818 3822 7795 7795 -0.004477662532735849 EQWFSYEPD 9 Unmodified _EQWFSYEPD_ 0 0 0 REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF MSMS UPN47_class_I_Rep_3 4 600.7442626953125 2 600.745836 1199.47712 NaN NaN NaN NaN NaN NaN NaN 31.91 1 35.209 34.709 35.709 3.2991 0 0 0 0.39428 1 5498 5498 2.0598 0.40713 1 + 6242 23024 3819 3823 7796 7796 -0.11464038278222688 EQWITHYQ 8 Unmodified _EQWITHYQ_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MSMS UPN46_class_I_Rep_3 1 552.7598266601562 2 552.759081 1103.50361 NaN NaN NaN NaN NaN NaN NaN 46.097 1 46.097 45.597 46.597 0 0 0 0 0.39242 1 9424 9424 10.824 3.5347 1 6243 3749 3820 3824 7797 7797 -0.04400304596265414 EQWITHYQ 8 Unmodified _EQWITHYQ_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS UPN47_class_I_Rep_3 4 552.7584228515625 2 552.759081 1103.50361 0.075328 4.1638E-05 0.25201 0.0001393 0.32734 0.00018094 552.7592048981452 42.365 0.66424 45.604 45.256 45.92 3.2394 77 46 2 0 0 0 0.82752 1 8652 8652 7.2892 2.0586 1 98376 6244 3749 3820 3824 7798 7798 -0.04400304596265414 ERAKLLRTMK 10 Unmodified _ERAKLLRTMK_ 0 0 0 ENST00000606070.1_1_6:108278833-108279097:+|nuORF ENST00000606070.1_1_6:108278833-108279097:+|nuORF ENST00000606070.1_1_6:108278833-108279097:+|nuORF MSMS UPN47_class_I_Rep_1 2 623.7138061523438 2 623.376632 1244.73871 NaN NaN NaN NaN NaN NaN NaN 107.71 1 111.39 110.89 111.89 3.6724 0 0 0 0.53105 1 26395 26395 8.1555 1.9497 1 6245 7682 3821 3825 7799 7799 0.12613089607657457 ERALLLAKNP 10 Unmodified _ERALLLAKNP_ 0 0 0 ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|200|3|anti-sense ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|200|3|anti-sense ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|200|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.8433227539062 2 562.842948 1123.67134 0.50408 0.00028372 0.36126 0.00020333 0.86534 0.00048705 562.8430979503835 107.87 0.26908 111.41 111.34 111.61 3.5382 72 29 3 0 0 0 0.48573 1 26341 26341 13.042 0.80181 1 25635000 6246 7736 3822 3826 7800 7800 0.11445382668375714 ERALLLNIAFL 11 Unmodified _ERALLLNIAFL_ 0 0 0 L1PA5_dup2267|chr3:149949042-149949747:-|1.089489952425346|0.0778975344608931|3.81|151.0|34|2|anti-sense L1PA5_dup2267|chr3:149949042-149949747:-|1.089489952425346|0.0778975344608931|3.81|151.0|34|2|anti-sense L1PA5_dup2267|chr3:149949042-149949747:-|1.089489952425346|0.0778975344608931|3.81|151.0|34|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 637.3892211914062 2 636.887355 1271.76016 0.57053 0.00036336 0.5707 0.00036347 1.1412 0.00072684 636.8874879761878 108.66 0.44942 112.3 112.17 112.62 3.6355 132 42 4 0 0 0 0.37961 1 26723 26723 10.8 0.64894 1 31376000 6247 14445 3823 3827 7801 7801 0.13514797908010223 ERARRWRRKRR 11 Unmodified _ERARRWRRKRR_ 0 0 0 REV__ENSG00000224109|ENST00000417339|CENPVL3 REV__ENSG00000224109|ENST00000417339|CENPVL3 MSMS UPN47_class_I_Rep_2 3 542.664306640625 3 542.664718 1624.97232 NaN NaN NaN NaN NaN NaN NaN 112.84 1 116.35 115.85 116.85 3.5171 0 0 0 0.38417 1 27446 27446 0 0 1 + 6248 21287 3824 3828 7802 7802 0.1848374688199783 ERCRYPRE 8 Unmodified _ERCRYPRE_ 0 0 0 REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793 REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793 MSMS UPN47_class_I_Rep_2 3 555.22314453125 2 554.769457 1107.52436 NaN NaN NaN NaN NaN NaN NaN 42.352 1 45.713 45.213 46.213 3.3611 0 0 0 0.40625 1 8627 8627 2.3027 0.24298 1 + 6249 20959 3825 3829 7803 7803 -0.02510037488218586 ERDFWKEADL 10 Unmodified _ERDFWKEADL_ 0 0 0 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|7|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|8|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|4|intron;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron MSMS UPN48_class_I_Rep_2 6 436.8785095214844 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 24.82 1 28.456 27.956 28.956 3.6363 0 0 0 0.53105 1 2934 2934 0.62683 0 1 6250 5001 3826 3830 7804 7804 -0.026887096787959308 EREAEDLY 8 Unmodified _EREAEDLY_ 0 0 0 REV__ENST00000486028.1_1_19:3574329-3575756:+|nuORF REV__ENST00000486028.1_1_19:3574329-3575756:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.732421875 2 512.732729 1023.4509 0.11885 6.0938E-05 0.25504 0.00013077 0.37389 0.00019171 512.7325507821691 50.524 0.55858 54.153 53.905 54.464 3.6285 34 24 2 0 0 0 0.82752 1 11066 11066 16.942 0 1 89637 + 6251 17746 3827 3831 7805 7805 -0.059883074497065536 EREAEDLY 8 Unmodified _EREAEDLY_ 0 0 0 REV__ENST00000486028.1_1_19:3574329-3575756:+|nuORF REV__ENST00000486028.1_1_19:3574329-3575756:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 513.2349243164062 2 512.732729 1023.4509 0.14166 7.2634E-05 0.39444 0.00020224 0.53611 0.00027488 513.2348612235072 50.726 0.37607 54.065 53.94 54.316 3.3386 30 20 2 0 0 0 0.82752 1 11190 11190 23.148 2.6948 1 66830 + 6252 17746 3827 3831 7806 7806 -0.059883074497065536 EREALTQTL 9 Unmodified _EREALTQTL_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS UPN47_class_I_Rep_1 2 530.78515625 2 530.785296 1059.55604 0.085721 4.5499E-05 0.45287 0.00024038 0.53859 0.00028588 531.2869952524212 45.789 0.51668 49.489 49.258 49.775 3.6999 42 30 2 0 0 0 0.40701 1 9701 9701 7.609 1.4032 1 93736 + 6253 18853 3828 3832 7807 7807 0.02864233746709033 EREALTQTL 9 Unmodified _EREALTQTL_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS UPN47_class_I_Rep_2 3 530.7850341796875 2 530.785296 1059.55604 0.062714 3.3288E-05 -0.18676 -9.9132E-05 -0.12405 -6.5844E-05 530.7852771574806 46.222 0.3688 49.576 49.299 49.668 3.3534 45 24 2 0 0 0 0.36258 1 9781 9781 10.151 1.4052 1 74758 + 6254 18853 3828 3832 7808 7808 0.02864233746709033 EREALTQTL 9 Unmodified _EREALTQTL_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS UPN47_class_I_Rep_3 4 530.7846069335938 2 530.785296 1059.55604 0.22909 0.0001216 0.037088 1.9686E-05 0.26618 0.00014128 530.7855983141936 46.218 0.56992 49.462 49.196 49.766 3.2441 52 35 2 0 0 0 0.15547 1 9868 9868 24.991 0.97039 1 87511 + 6255 18853 3828 3832 7809 7809 0.02864233746709033 EREAMTTF 8 Unmodified _EREAMTTF_ 0 0 0 REV__ENSG00000222038|ENST00000409602|POTEJ REV__ENSG00000222038|ENST00000409602|POTEJ MSMS UPN46_class_I_Rep_3 1 492.7389221191406 2 492.726392 983.438231 NaN NaN NaN NaN NaN NaN NaN 26.215 1 26.215 25.715 26.715 0 0 0 0 0.40404 1 3714 3714 5.2307 0 1 + 6256 20958 3829 3833 7810 7810 -0.054150421136114346 EREFNESLDEF 11 Unmodified _EREFNESLDEF_ 0 0 0 REV__L1PA16_dup4847|chr5:131746269-131747225:-|1.0646415424322255|0.0715253200252459|3.9|151.0|6|1|sense REV__L1PA16_dup4847|chr5:131746269-131747225:-|1.0646415424322255|0.0715253200252459|3.9|151.0|6|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 471.7557678222656 3 472.208889 1413.60484 0.12405 5.8579E-05 0.036431 1.7203E-05 0.16048 7.5782E-05 472.54324622035085 43.442 0.66492 47.081 46.75 47.414 3.6385 94 50 3 0 0 0 22.551 1 8066 8066 1.4551 0 1 237050 + 6257 29386 3830 3834 7811 7811 -0.08541942474857933 ERELKFNN 8 Unmodified _ERELKFNN_ 0 0 0 REV__ENSG00000117139|ENST00000367265|KDM5B REV__ENSG00000117139|ENST00000367265|KDM5B MSMS UPN48_class_I_Rep_1 5 525.2867431640625 2 525.272355 1048.53016 NaN NaN NaN NaN NaN NaN NaN 34.561 1 38.076 37.576 38.576 3.5144 0 0 0 0.40625 1 5544 5544 2.3027 0.4585 1 + 6258 18624 3831 3835 7812 7812 0.00783384295095857 EREWSREHA 9 Unmodified _EREWSREHA_ 0 0 0 REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF REV__ENST00000577174.1_1_16:10934243-10934807:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 600.2807006835938 2 600.281243 1198.54793 0.47591 0.00028568 1.8303 0.0010987 2.3062 0.0013844 600.2818183143816 80.844 0.29398 84.153 83.941 84.235 3.309 39 35 2 0 0 0 0.36392 1 20233 20233 10.074 1.3285 1 171980 + 6259 23110 3832 3836 7813 7813 -0.04339900450031564 EREYFVDEL 9 Unmodified _EREYFVDEL_ 0 0 0 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 MULTI-MSMS UPN48_class_I_Rep_3 7 600.7826538085938 2 600.282586 1198.55062 0.48818 0.00029305 -0.10911 -6.5498E-05 0.37907 0.00022755 600.2824411359198 58.646 0.64317 62.169 61.889 62.532 3.5231 75 42 2 0 0 0 0.38714 1 12674 12674 8.7454 0.58988 1 240860 + 6260 19574 3833 3837 7814 7814 -0.040714898357464335 ERFSRLLP 8 Unmodified _ERFSRLLP_ 0 0 0 REV__L1MB5_dup1693|chr3:136942287-136943279:-|1.3344387139311995|0.1257732668047589|3.41|151.0|45|2|anti-sense REV__L1MB5_dup1693|chr3:136942287-136943279:-|1.3344387139311995|0.1257732668047589|3.41|151.0|45|2|anti-sense MSMS UPN46_class_I_Rep_3 1 509.3061828613281 2 509.295633 1016.57671 NaN NaN NaN NaN NaN NaN NaN 88.117 1 88.117 87.617 88.617 0 0 0 0 0.40581 1 21146 21146 2.8892 0 1 + 6261 26039 3834 3838 7815 7815 0.06908868917037125 ERFVKGYKN 9 Unmodified _ERFVKGYKN_ 0 0 0 L1MA5A_dup1343|chr6:72826595-72828906:-|1.8440707691702456|0.007670215527361|7.91|151.0|22|1|sense L1MA5A_dup1343|chr6:72826595-72828906:-|1.8440707691702456|0.007670215527361|7.91|151.0|22|1|sense L1MA5A_dup1343|chr6:72826595-72828906:-|1.8440707691702456|0.007670215527361|7.91|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.8114624023438 2 570.811648 1139.60874 0.4106 0.00023437 -0.078135 -4.4601E-05 0.33246 0.00018977 570.8116213117154 43.195 0.6489 46.706 46.406 47.055 3.5103 94 51 2 0 0 0 0.47197 1 8100 8100 3.5965 0 1 220840 6262 9934 3835 3839 7816 7816 0.04452236600195647 ERGLNGCEW 9 Unmodified _ERGLNGCEW_ 0 0 0 MER57A1_dup320|chr5:55439128-55439546:+|1.7845846153260445|0.2356127491661822|2.92|151.0|23|3|anti-sense MER57A1_dup320|chr5:55439128-55439546:+|1.7845846153260445|0.2356127491661822|2.92|151.0|23|3|anti-sense MER57A1_dup320|chr5:55439128-55439546:+|1.7845846153260445|0.2356127491661822|2.92|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_3 7 532.7026977539062 2 532.234916 1062.45528 NaN NaN NaN NaN NaN NaN NaN 99.547 1 103.43 102.93 103.93 3.8839 0 0 0 0.38639 1 23573 23573 3.9444 1.3669 1 6263 16123 3836 3840 7817 7817 -0.07345121507796648 ERHFKFYN 8 Unmodified _ERHFKFYN_ 0 0 0 REV__L1PA7_dup12097|chr17:31119241-31120721:-|1.0648980385685625|0.0261460751412192|5.35|151.0|38|3|sense REV__L1PA7_dup12097|chr17:31119241-31120721:-|1.0648980385685625|0.0261460751412192|5.35|151.0|38|3|sense MSMS UPN47_class_I_Rep_2 3 570.78173828125 2 570.78289 1139.55123 NaN NaN NaN NaN NaN NaN NaN 119.18 1 122.66 122.16 123.16 3.4793 0 0 0 0.40625 1 29187 29187 2.3027 0.4585 1 + 6264 30010 3837 3841 7818 7818 -0.012966056053755892 ERHIHMYT 8 Unmodified _ERHIHMYT_ 0 0 0 REV__L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|12|2|sense REV__L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 543.76220703125 2 543.761101 1085.50765 NaN NaN NaN NaN NaN NaN NaN 64.962 1 68.416 67.916 68.916 3.4541 0 0 0 0.40643 1 14744 14744 2.0598 0 1 + 6265 26850 3838 3842 7819 7819 -0.03168538374188756 ERHQRQQR 8 Unmodified _ERHQRQQR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|25|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 569.30322265625 2 569.302844 1136.59114 NaN NaN NaN NaN NaN NaN NaN 31.476 1 34.946 34.446 35.446 3.4691 0 0 0 0.40643 1 5332 5332 2.0598 0.21551 1 + 6266 23937 3839 3843 7820 7820 0.02830334117879829 ERHQSRNNDT 10 Unmodified _ERHQSRNNDT_ 0 0 0 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 REV__nc|ENSG00000127870|Q9Y252-2|RNF6 MSMS UPN48_class_I_Rep_3 7 628.7902221679688 2 628.789963 1255.56537 NaN NaN NaN NaN NaN NaN NaN 29.664 1 33.392 32.892 33.892 3.7286 0 0 0 0.53105 1 4187 4187 3.5965 0 1 + 6267 18886 3840 3844 7821 7821 -0.052186049150577674 ERHSCYSDVI 10 Unmodified _ERHSCYSDVI_ 0 0 0 REV__ENST00000234038.10_1_2:242122245-242122506:+|nuORF REV__ENST00000234038.10_1_2:242122245-242122506:+|nuORF MSMS UPN48_class_I_Rep_3 7 604.77392578125 2 604.771862 1207.52917 NaN NaN NaN NaN NaN NaN NaN 17.469 1 21.033 20.533 21.533 3.5637 0 0 0 0.53105 1 1001 1001 1.1933 0.50296 1 + 6268 21498 3841 3845 7822 7822 -0.06629198136124614 ERIERLLPEY 10 Unmodified _ERIERLLPEY_ 0 0 0 REV__L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|13|1|sense REV__L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 439.2711486816406 3 439.910227 1316.70885 0.088509 3.8936E-05 -0.33033 -0.00014532 -0.24183 -0.00010638 439.9099634791445 36.898 0.056538 40.6 40.572 40.628 3.7021 5 4 2 0 0 0 0.84575 1 6245 6245 0.77653 0 1 52731 + 6269 30152 3842 3846 7823 7823 0.06316429143316782 ERIKTQAK 8 Unmodified _ERIKTQAK_ 0 0 0 L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.2930603027344 2 487.293091 972.571629 0.16418 8.0002E-05 -0.01078 -5.2532E-06 0.1534 7.4749E-05 487.2930019254363 81.928 0.45911 85.503 85.326 85.785 3.5753 78 55 2 0 0 0 0.82752 1 19581 19581 2.5775 0.51773 1 108790 6270 12230 3843 3847 7824 7824 0.08424565054417599 ERIKTQAK 8 Unmodified _ERIKTQAK_ 0 0 0 L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense MSMS UPN48_class_I_Rep_2 6 487.2931213378906 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 81.943 1 85.611 85.111 86.111 3.669 0 0 0 0.40604 1 19459 19459 2.5775 0.27475 1 6271 12230 3843 3847 7825 7825 0.08424565054417599 ERIKTQAK 8 Unmodified _ERIKTQAK_ 0 0 0 L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.29290771484375 2 487.293091 972.571629 0.26695 0.00013008 -0.018958 -9.2383E-06 0.24799 0.00012085 487.2929616777723 81.901 0.63246 85.586 85.317 85.949 3.685 109 75 2 0 0 0 0.82752 1 19390 19390 2.5775 0.92486 1 162590 6272 12230 3843 3847 7826 7826 0.08424565054417599 ERKLRQQRR 9 Unmodified _ERKLRQQRR_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MSMS UPN46_class_I_Rep_3 1 635.8163452148438 2 635.384168 1268.75378 NaN NaN NaN NaN NaN NaN NaN 79.335 1 79.335 78.835 79.835 0 0 0 0 0.40098 1 18631 18631 0.45834 0 1 + 6273 19868 3844 3848 7827 7827 0.13015717519897407 ERLAPVSRRK 10 Unmodified _ERLAPVSRRK_ 0 0 0 HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3703002929688 2 606.370195 1210.72584 0.60563 0.00036724 -0.76108 -0.0004615 -0.15545 -9.426E-05 606.369722632857 89.161 0.098511 89.161 89.113 89.212 0 14 9 2 0 0 0 0.56374 1 21444 21444 1.1933 0.66858 1 234550 6274 8448 3845 3849 7828 7828 0.12890394539772387 ERLAPVSRRK 10 Unmodified _ERLAPVSRRK_ 0 0 0 HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 606.370195 1210.72584 0.60563 0.00036724 -0.76108 -0.0004615 -0.15545 -9.426E-05 606.369722632857 89.161 0.098511 89.161 89.113 89.212 0 -0.0098549 4.8158E-05 NaN 1.1933 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 234550 6275 8448 3845 3849 0.12890394539772387 ERLAPVSRRK 10 Unmodified _ERLAPVSRRK_ 0 0 0 HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense HUERS-P3-int_dup53|chr2:69794782-69796464:-|2.0348643134184896|0.3092035655049134|2.72|151.0|108|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 606.370195 1210.72584 0.47699 0.00028923 -0.89615 -0.0005434 -0.41916 -0.00025416 606.3695440501981 85.589 0.11989 89.18 89.121 89.241 3.5914 0.0098549 -0.00011565 NaN 1.1933 16 15 2 NaN NaN NaN NaN 0 NaN NaN 0 62997 6276 8448 3845 3849 0.12890394539772387 ERLEIPPPF 9 Unmodified _ERLEIPPPF_ 0 0 0 ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG ENSG00000126583|ENST00000263431|PRKCG ENSG00000126583|ENST00000263431|PRKCG MSMS UPN48_class_I_Rep_1 5 549.301025390625 2 549.303124 1096.5917 NaN NaN NaN NaN NaN NaN NaN 42.018 1 45.526 45.026 46.026 3.5079 0 0 0 0.39326 1 7725 7725 2.3027 0.24298 1 6277 2542 3846 3850 7829 7829 0.04726315994366814 ERLFDLYYY 9 Unmodified _ERLFDLYYY_ 0 0 0 ENST00000409881.1_1_7:30898614-30931617:+|nuORF;ENSG00000106125|ENST00000265299|MINDY4 ENST00000409881.1_1_7:30898614-30931617:+|nuORF ENST00000409881.1_1_7:30898614-30931617:+|nuORF MSMS UPN48_class_I_Rep_3 7 641.3107299804688 2 641.311146 1280.60774 NaN NaN NaN NaN NaN NaN NaN 38.535 1 42.195 41.695 42.695 3.6595 0 0 0 0.40038 1 6634 6634 0.6015 0 1 6278 1776 3847 3851 7830 7830 -0.021340225594030926 ERLKAEHN 8 Unmodified _ERLKAEHN_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|25|3|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|25|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 498.9752502441406 2 498.764697 995.514842 -0.29639 -0.00014783 -0.70976 -0.00035401 -1.0062 -0.00050183 498.764386069982 12.764 0.091644 12.764 12.685 12.777 0 7 5 2 0 0 0 0.72333 1 183 183 3.5965 0.70727 1 18804 + 6279 28426 3848 3852 7831 7831 0.01690517497888777 ERLRLAAA 8 Unmodified _ERLRLAAA_ 0 0 0 SVA_D_dup1175|chr16:47180353-47182198:+|1.4893746077257617|0.1004229804959602|3.89|151.0|27|2|sense REV__ENST00000251195.9_2_1:36235451-36235556:-|nuORF REV__ENST00000251195.9_2_1:36235451-36235556:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 450.274658203125 2 450.274701 898.534849 0.1856 8.3571E-05 -0.29897 -0.00013462 -0.11337 -5.1049E-05 450.2744774516813 91.056 0.080566 91.056 91.003 91.083 0 10 6 2 0 0 0 0.82752 1 21971 21971 0.69038 0 1 54034 6280 21520 3849 3853 7832 7832 0.08152313228492858 ERLRLAAA 8 Unmodified _ERLRLAAA_ 0 0 0 SVA_D_dup1175|chr16:47180353-47182198:+|1.4893746077257617|0.1004229804959602|3.89|151.0|27|2|sense REV__ENST00000251195.9_2_1:36235451-36235556:-|nuORF REV__ENST00000251195.9_2_1:36235451-36235556:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 450.274701 898.534849 -0.19586 -8.8193E-05 -0.06804 -3.0636E-05 -0.2639 -0.00011883 450.27458896210516 87.336 0.039391 90.716 90.699 90.739 3.3801 -0.16997 0.00014506 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 40846 6281 21520 3849 3853 0.08152313228492858 ERMHIFFF 8 Unmodified _ERMHIFFF_ 0 0 0 REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|184|3|anti-sense REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|184|3|anti-sense MSMS UPN47_class_I_Rep_1 2 563.7797241210938 2 563.778762 1125.54297 NaN NaN NaN NaN NaN NaN NaN 75.827 1 79.23 78.73 79.73 3.4034 0 0 0 0.40738 1 18736 18736 0.79363 0 1 + 6282 29376 3850 3854 7833 7833 -0.014778758463762642 ERMHPYIELAW 11 Unmodified _ERMHPYIELAW_ 0 0 0 ENSG00000160991|ENST00000495936|ORAI2 ENSG00000160991|ENST00000495936|ORAI2 ENSG00000160991|ENST00000495936|ORAI2 MSMS UPN48_class_I_Rep_1 5 482.2409973144531 3 482.239578 1443.69691 NaN NaN NaN NaN NaN NaN NaN 56.77 1 60.271 59.771 60.771 3.5014 0 0 0 0.38417 1 12243 12243 1.0136 0 1 6283 3894 3851 3855 7834 7834 -0.007195108714995513 ERNEKVLY 8 Unmodified _ERNEKVLY_ 0 0 0 L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.7825927734375 2 525.782556 1049.55056 -0.037734 -1.984E-05 0.0016521 8.6867E-07 -0.036081 -1.8971E-05 525.7824656077008 42.355 0.80191 46.035 45.704 46.506 3.6792 109 54 3 0 0 0 0.82752 2 8642 8642;8683 15.847 1.9411 1 194030 6284 12884 3852 3856 7835;7836 7835 0.027765549549030766 ERNEKVLY 8 Unmodified _ERNEKVLY_ 0 0 0 L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 525.782470703125 2 525.782556 1049.55056 -0.2361 -0.00012414 0.35892 0.00018871 0.12282 6.4575E-05 525.7825930316677 42.772 0.81332 46.133 45.686 46.499 3.3611 102 55 3 0 0 0 0.82752 3 8806 8723;8761;8806 21.747 15.847 1 187330 6285 12884 3852 3856 7837;7838;7839 7839 0.027765549549030766 ERNEKVLY 8 Unmodified _ERNEKVLY_ 0 0 0 L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.7822875976562 2 525.782556 1049.55056 0.016378 8.6113E-06 0.118 6.2044E-05 0.13438 7.0655E-05 525.7824905547996 42.91 0.80239 46.15 45.758 46.56 3.2394 93 52 2 0 0 0 0.82752 2 8798 8798;8838 21.747 2.4897 1 152720 6286 12884 3852 3856 7840;7841 7840 0.027765549549030766 ERPAKRRRVN 10 Unmodified _ERPAKRRRVN_ 0 0 0 nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160.15,MIER1,chr1,+,I2.1,66926243,66928886|23|4.39|3|intron;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108|MIER1;ENSG00000198160.15,MIER1,chr1,+,I5.1,66932822,66940027|71|10.84|7|intron;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-13|MIER1 nc|ENSG00000198160|Q8N108-13|MIER1 MULTI-MSMS UPN46_class_I_Rep_3 1 641.3857421875 2 641.384168 1280.75378 0.74868 0.00048019 0.96021 0.00061586 1.7089 0.0010961 641.384717910267 98.261 0.15348 98.261 98.186 98.34 0 22 19 2 0 0 0 0.56309 1 23929 23929 1.6526 0.17072 1 285900 6287 5415 3853 3857 7842 7842 0.12463717519881357 ERQKKALG 8 Unmodified _ERQKKALG_ 0 0 0 ENSG00000198382|ENST00000356136|UVRAG;ENST00000530501.1_1_11:75672590-75694706:+|nuORF;ENST00000533454.5_2_11:75672590-75724017:+|nuORF ENSG00000198382|ENST00000356136|UVRAG ENSG00000198382|ENST00000356136|UVRAG MULTI-MSMS UPN46_class_I_Rep_3 1 465.28021240234375 2 465.279983 928.545414 0.21977 0.00010226 -0.31082 -0.00014462 -0.091051 -4.2364E-05 465.27973330162007 83.26 0.75526 83.26 83.141 83.897 0 104 76 3 0 0 0 0.82752 1 19835 19835 2.8892 0.31174 1 363750 6288 5429 3854 3858 7843 7843 0.07828295882950442 ERQKKRRGRP 10 Unmodified _ERQKKRRGRP_ 0 0 0 REV__ENST00000599904.2_1_20:45947708-45947882:+|nuORF REV__ENST00000599904.2_1_20:45947708-45947882:+|nuORF MSMS UPN48_class_I_Rep_3 7 437.60186767578125 3 437.600721 1309.78033 NaN NaN NaN NaN NaN NaN NaN 50.035 1 53.656 53.156 54.156 3.621 0 0 0 0.53105 1 10108 10108 1.9064 0.45126 1 + 6289 23210 3855 3859 7844 7844 0.13783406411221222 ERQLKIPKQR 10 Unmodified _ERQLKIPKQR_ 0 0 0 REV__L1MCa_dup5747|chr13:46027671-46029424:+|1.2312918289073216|0.0577094080141094|4.42|151.0|49|3|sense REV__L1MCa_dup5747|chr13:46027671-46029424:+|1.2312918289073216|0.0577094080141094|4.42|151.0|49|3|sense MSMS UPN48_class_I_Rep_2 6 648.2929077148438 2 648.398953 1294.78335 NaN NaN NaN NaN NaN NaN NaN 88.736 1 92.474 91.974 92.974 3.7379 0 0 0 0.53105 1 21123 21123 1.3295 0.13619 1 + 6290 27215 3856 3860 7845 7845 0.14775236745344955 ERRDILMDK 9 Unmodified _ERRDILMDK_ 0 0 0 ENSG00000196812|ENST00000340487|ZSCAN16 ENSG00000196812|ENST00000340487|ZSCAN16 ENSG00000196812|ENST00000340487|ZSCAN16 MSMS UPN48_class_I_Rep_1 5 588.3150024414062 2 588.313697 1174.61284 NaN NaN NaN NaN NaN NaN NaN 50.779 1 54.304 53.804 54.804 3.5246 0 0 0 0.3967 1 10405 10405 1.4819 0.15237 1 6291 5333 3857 3861 7846 7846 0.03251958031592039 ERRGKEEEEK 10 Unmodified _ERRGKEEEEK_ 0 0 0 ENST00000484123.1_1_2:73280515-73298756:-|nuORF ENST00000484123.1_1_2:73280515-73298756:-|nuORF ENST00000484123.1_1_2:73280515-73298756:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 645.3262939453125 2 645.325847 1288.63714 0.40438 0.00026095 0.97623 0.00062999 1.3806 0.00089094 645.3262444104365 54.003 0.3531 57.531 57.32 57.673 3.5278 39 19 3 0 0 0 0.56333 1 12166 12166 1.4819 0 1 75573 6292 7016 3858 3862 7847 7847 0.00436889718821476 ERRGKEEEEK 10 Unmodified _ERRGKEEEEK_ 0 0 0 ENST00000484123.1_1_2:73280515-73298756:-|nuORF ENST00000484123.1_1_2:73280515-73298756:-|nuORF ENST00000484123.1_1_2:73280515-73298756:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 645.8287963867188 2 645.325847 1288.63714 0.51678 0.00033349 0.79011 0.00050988 1.3069 0.00084337 645.3261457928207 54.24 0.57475 57.558 57.324 57.899 3.3187 40 28 2 0 0 0 0.56333 1 12200 12200 1.4819 0 1 94551 6293 7016 3858 3862 7848 7848 0.00436889718821476 ERRRMECLD 9 Unmodified _ERRRMECLD_ 0 0 0 ENST00000547420.5_1_14:36300617-36327811:+|nuORF;ENST00000548758.1_1_14:36295674-36335014:+|nuORF;nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L ENST00000547420.5_1_14:36300617-36327811:+|nuORF ENST00000547420.5_1_14:36300617-36327811:+|nuORF MSMS UPN46_class_I_Rep_3 1 604.2870483398438 2 604.287156 1206.55976 NaN NaN NaN NaN NaN NaN NaN 73.551 1 73.551 73.051 74.051 0 0 0 0 0.39518 1 17053 17053 1.8442 0 1 6294 1539 3859 3863 7849 7849 -0.03525743022714778 ERRRRKAQR 9 Unmodified _ERRRRKAQR_ 0 0 0 nc|ENSG00000196557|O95180-2|CACNA1H nc|ENSG00000196557|O95180-2|CACNA1H nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN46_class_I_Rep_3 1 628.3845825195312 2 628.38196 1254.74937 NaN NaN NaN NaN NaN NaN NaN 34.885 1 34.885 34.385 35.385 0 0 0 0 0.4007 1 6284 6284 0.52476 0 1 6295 16793 3860 3864 7850 7850 0.13218253096965782 ERRRRMKK 8 Unmodified _ERRRRMKK_ 0 0 0 ENST00000483551.6_1_15:69072778-69075308:-|nuORF ENST00000483551.6_1_15:69072778-69075308:-|nuORF ENST00000483551.6_1_15:69072778-69075308:-|nuORF MSMS UPN46_class_I_Rep_3 1 580.3538208007812 2 580.351283 1158.68801 NaN NaN NaN NaN NaN NaN NaN 61.431 1 61.431 60.931 61.931 0 0 0 0 0.40746 1 13671 13671 0.69038 0 1 6296 7012 3861 3865 7851 7851 0.11501605073340215 ERRRRSHLK 9 Unmodified _ERRRRSHLK_ 0 0 0 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 MULTI-MSMS UPN48_class_I_Rep_3 7 619.8734741210938 2 619.371061 1236.72757 0.58995 0.0003654 0.44092 0.00027309 1.0309 0.00063849 619.3711005884627 92.586 0.34172 96.464 96.248 96.589 3.8782 83 47 2 0 0 0 0.48846 1 21954 21954 1.8442 0.36234 1 223790 + 6297 17463 3862 3866 7852 7852 0.11867448348402831 ERRRTFFN 8 Unmodified _ERRRTFFN_ 0 0 0 REV__THE1D_dup11634|chr18:32055376-32055683:-|1.394363044503548|0.007488757486971|7.54|151.0|24|3|anti-sense REV__THE1D_dup11634|chr18:32055376-32055683:-|1.394363044503548|0.007488757486971|7.54|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_1 5 563.2992553710938 2 563.299239 1124.58392 NaN NaN NaN NaN NaN NaN NaN 53.552 1 57.071 56.571 57.571 3.5192 0 0 0 0.40625 1 11251 11251 2.3027 0 1 + 6298 32295 3863 3867 7853 7853 0.026616015174795393 ERRRYLLLI 9 Unmodified _ERRRYLLLI_ 0 0 0 ENST00000342287.9_2_9:128728684-128729074:+|nuORF ENST00000342287.9_2_9:128728684-128729074:+|nuORF ENST00000342287.9_2_9:128728684-128729074:+|nuORF MSMS UPN48_class_I_Rep_1 5 616.385009765625 2 616.385314 1230.75608 NaN NaN NaN NaN NaN NaN NaN 63.022 1 66.484 65.984 66.984 3.4625 0 0 0 0.39598 1 14153 14153 1.6526 1.0511 1 6299 6236 3864 3868 7854 7854 0.14992753205001463 ERRWAKKTK 9 Unmodified _ERRWAKKTK_ 0 0 0 ENST00000479314.1_1_3:44968183-44974766:-|nuORF;ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3 ENST00000479314.1_1_3:44968183-44974766:-|nuORF ENST00000479314.1_1_3:44968183-44974766:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.857421875 2 601.859464 1201.70437 NaN NaN NaN NaN NaN NaN NaN 99.263 1 99.263 98.763 99.763 0 0 0 0 0.40098 1 24179 24179 0.45834 0.10771 1 6300 4046 3865 3869 7855 7855 0.11159009511061413 ERTKDFENLFN 11 Unmodified _ERTKDFENLFN_ 0 0 0 L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|75|2|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|75|2|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|75|2|sense MSMS UPN47_class_I_Rep_3 4 471.5635681152344 3 471.565008 1411.67319 NaN NaN NaN NaN NaN NaN NaN 21.513 1 24.863 24.363 25.363 3.3496 0 0 0 0.38417 1 2419 2419 1.1098 0.33322 1 6301 9798 3866 3870 7856 7856 -0.01617653104335659 ERTQRNGK 8 Unmodified _ERTQRNGK_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|115|2|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|170|3|sense;L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|180|3|sense;L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|63|2|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|115|2|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|115|2|sense MSMS UPN48_class_I_Rep_2 6 494.7696838378906 2 494.767771 987.52099 NaN NaN NaN NaN NaN NaN NaN 40.986 1 44.737 44.237 45.237 3.7508 0 0 0 0.40472 1 7440 7440 4.3292 0.73274 1 6302 13803 3867 3871 7857 7857 0.026730357294241003 ERVAVVGLPPA 11 Unmodified _ERVAVVGLPPA_ 0 0 0 ENST00000590335.1_1_19:45974100-45974211:+|nuORF ENST00000590335.1_1_19:45974100-45974211:+|nuORF ENST00000590335.1_1_19:45974100-45974211:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 554.3297729492188 2 554.329673 1106.64479 0.39313 0.00021792 -0.055131 -3.0561E-05 0.338 0.00018736 554.3295818867208 110.58 0.089203 114.24 114.21 114.3 3.6654 18 8 4 0 0 0 0.65271 1 26241 26241 2.9952 0.93549 1 951470 6303 7610 3868 3872 7858 7858 0.09573693777065273 ERVAVVGLPPA 11 Unmodified _ERVAVVGLPPA_ 0 0 0 ENST00000590335.1_1_19:45974100-45974211:+|nuORF ENST00000590335.1_1_19:45974100-45974211:+|nuORF ENST00000590335.1_1_19:45974100-45974211:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 554.329673 1106.64479 0.63293 0.00035085 0.021802 1.2085E-05 0.65473 0.00036294 554.3293342628509 110.93 0.11917 114.46 114.38 114.5 3.5271 0.10674 4.3335E-05 NaN 2.9952 19 12 3 NaN NaN NaN NaN 0 NaN NaN 0 199440 6304 7610 3868 3872 0.09573693777065273 ERVGRLTV 8 Unmodified _ERVGRLTV_ 0 0 0 REV__MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|24|3|anti-sense REV__MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_2 6 465.27978515625 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 79.839 1 83.483 82.983 83.983 3.6446 0 0 0 0.40625 1 18978 18978 2.3027 0 1 + 6305 31623 3869 3873 7859 7859 0.07828295882927705 ERVQILLK 8 Unmodified _ERVQILLK_ 0 0 0 MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|50|3|sense MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|50|3|sense MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.8223571777344 2 499.821484 997.628415 -0.23257 -0.00011624 0.23876 0.00011934 0.006189 3.0934E-06 499.82155432653764 39.573 0.54577 43.239 42.885 43.431 3.6668 53 40 2 0 0 0 0.82752 1 7716 7716 0.69038 0 1 68810 6306 16197 3870 3874 7860 7860 0.12950612610961798 ERYKNQFFI 9 Unmodified _ERYKNQFFI_ 0 0 0 REV__ENSG00000163630|ENST00000478300|SYNPR REV__ENSG00000163630|ENST00000478300|SYNPR MSMS UPN46_class_I_Rep_3 1 622.8250122070312 2 622.824755 1243.63496 NaN NaN NaN NaN NaN NaN NaN 66.279 1 66.279 65.779 66.779 0 0 0 0 0.39598 1 15030 15030 1.6526 0 1 + 6307 19991 3871 3875 7861 7861 0.022885057716621304 ERYMKHRRNWR 11 Unmodified _ERYMKHRRNWR_ 0 0 0 REV__ENSG00000108950|ENST00000592554|FAM20A REV__ENSG00000108950|ENST00000592554|FAM20A MSMS UPN46_class_I_Rep_3 1 544.7673950195312 3 544.619787 1630.83753 NaN NaN NaN NaN NaN NaN NaN 68.581 1 68.581 68.081 69.081 0 0 0 0 0.38417 1 15667 15667 0.094841 0 1 + 6308 18398 3872 3876 7862 7862 0.04734505625287966 ERYRQWCK 8 Unmodified _ERYRQWCK_ 0 0 0 REV__L1MB4_dup6514|chr13:20009403-20010183:-|1.6444995672225304|0.0166486118488279|6.63|151.0|21|3|sense REV__L1MB4_dup6514|chr13:20009403-20010183:-|1.6444995672225304|0.0166486118488279|6.63|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 584.849365234375 2 584.78765 1167.56075 NaN NaN NaN NaN NaN NaN NaN 24.464 1 24.464 23.964 24.964 0 0 0 0 0.40746 1 3220 3220 0.69038 0 1 + 6309 26003 3873 3877 7863 7863 -0.0163316059151839 ERYRRVPGV 9 Unmodified _ERYRRVPGV_ 0 0 0 ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN MSMS UPN46_class_I_Rep_3 1 566.3228149414062 2 566.322714 1130.63087 NaN NaN NaN NaN NaN NaN NaN 88.787 1 88.787 88.287 89.287 0 0 0 0 0.40038 1 21337 21337 0.6015 0 1 6310 4747 3874 3878 7864 7864 0.07078461068613251 ERYRYGRRRQR 11 Unmodified _ERYRYGRRRQR_ 0 0 0 REV__ENSG00000198771.11,RCSD1,chr1,+,I6.1,167642007,167663490|87|20.37|1|intron REV__ENSG00000198771.11,RCSD1,chr1,+,I6.1,167642007,167663490|87|20.37|1|intron MSMS UPN46_class_I_Rep_3 1 532.6284790039062 3 532.629451 1594.86652 NaN NaN NaN NaN NaN NaN NaN 25.794 1 25.794 25.294 26.294 0 0 0 0 0.38417 1 3592 3592 0 0 1 + 6311 21146 3875 3879 7865 7865 0.09288366245891666 ESAAQINRT 9 Unmodified _ESAAQINRT_ 0 0 0 REV__L1PA16_dup2554|chr3:111659629-111660955:+|2.0931319421040566|0.0942486353811044|4.47|146.0|4|1|sense REV__L1PA16_dup2554|chr3:111659629-111660955:+|2.0931319421040566|0.0942486353811044|4.47|146.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 495.2539978027344 2 495.254163 988.493772 NaN NaN NaN NaN NaN NaN NaN 18.995 1 22.582 22.082 23.082 3.5874 0 0 0 0.26021 1 1355 1355 12.873 3.4895 1 + 6312 29364 3876 3880 7866 7866 -0.0009349260162707651 ESAGGLIQTAR 11 Unmodified _ESAGGLIQTAR_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MSMS UPN48_class_I_Rep_1 5 551.7974243164062 2 551.796195 1101.57784 0.54406 0.00030021 -0.054172 -2.9892E-05 0.48989 0.00027032 551.7961404704565 34.202 0.4521 37.716 37.471 37.923 3.5144 55 43 2 0 0 0 0.59293 2 5401 5401;5419 5.4027 3.3167 1 79414 6313 3006 3877 3881 7867;7868 7867 0.031110384952853565 ESAGGLIQTAR 11 Unmodified _ESAGGLIQTAR_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MSMS UPN48_class_I_Rep_3 7 551.7979125976562 2 551.796195 1101.57784 0.29897 0.00016497 0.1024 5.6505E-05 0.40138 0.00022148 551.7962929679867 33.921 0.44796 37.601 37.463 37.911 3.6797 73 50 2 0 0 0 0.30774 1 5327 5327 14.957 7.3482 1 62202 6314 3006 3877 3881 7869 7869 0.031110384952853565 ESAGGLIQTAR 11 Unmodified _ESAGGLIQTAR_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 551.796195 1101.57784 0.47919 0.00026442 -0.067325 -3.715E-05 0.41186 0.00022727 551.7961435351529 34.043 0.42891 37.704 37.435 37.863 3.6607 0.030196 -6.5908E-05 NaN 14.957 74 45 2 NaN NaN NaN NaN 0 NaN NaN 0 109500 6315 3006 3877 3881 0.031110384952853565 ESAPEGQAQQR 11 Unmodified _ESAPEGQAQQR_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MULTI-MSMS UPN48_class_I_Rep_1 5 600.7835083007812 2 600.783815 1199.55308 0.55352 0.00033255 -0.79111 -0.00047529 -0.23759 -0.00014274 600.7833089919925 13.494 0.33769 17.008 16.861 17.199 3.5133 71 46 2 0 0 0 0.42924 2 245 238;245 9.544 6.5487 1 46606 6316 1014 3878 3882 7870;7871 7871 -0.03871641378100321 ESAPEGQAQQR 11 Unmodified _ESAPEGQAQQR_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MULTI-MSMS UPN48_class_I_Rep_2 6 601.2843627929688 2 600.783815 1199.55308 0.5959 0.00035801 -0.8388 -0.00050394 -0.2429 -0.00014593 600.7833600904191 13.205 0.25845 16.86 16.766 17.024 3.6549 61 35 2 0 0 0 0.42924 1 207 207 9.544 6.5487 1 58938 6317 1014 3878 3882 7872 7872 -0.03871641378100321 ESAQWKAKE 9 Unmodified _ESAQWKAKE_ 0 0 0 REV__HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|21|2|sense REV__HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 538.7740478515625 2 538.772188 1075.52982 NaN NaN NaN NaN NaN NaN NaN 66.271 1 69.779 69.279 70.279 3.5077 0 0 0 0.27207 1 15039 15039 12.241 2.8575 1 + 6318 23486 3879 3883 7873 7873 -0.0049203542478153395 ESAYYEYMG 9 Unmodified _ESAYYEYMG_ 0 0 0 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 MULTI-MSMS UPN47_class_I_Rep_1 2 556.7155151367188 2 556.71569 1111.41683 0.37178 0.00020698 -0.028404 -1.5813E-05 0.34338 0.00019116 556.7155224812576 55.917 0.62363 59.395 59.109 59.733 3.4785 51 35 2 0 0 0 0.48846 1 12758 12758 1.8442 0 1 94104 + 6319 18168 3880 3884 7874 7874 -0.13442471932989974 ESCIWITFY 9 Unmodified _ESCIWITFY_ 0 0 0 REV__nc|ENSG00000001631|O00522-2|KRIT1 REV__nc|ENSG00000001631|O00522-2|KRIT1 MSMS UPN47_class_I_Rep_3 4 581.2654418945312 2 581.267893 1160.52123 NaN NaN NaN NaN NaN NaN NaN 45.315 1 48.559 48.059 49.059 3.2441 0 0 0 0.29868 1 9589 9589 10.824 2.0785 1 + 6320 17513 3881 3885 7875 7875 -0.0526072538561948 ESCIWITFY 9 Unmodified _ESCIWITFY_ 0 0 0 REV__nc|ENSG00000001631|O00522-2|KRIT1 REV__nc|ENSG00000001631|O00522-2|KRIT1 MSMS UPN47_class_I_Rep_3 4 581.2655029296875 2 581.267893 1160.52123 NaN NaN NaN NaN NaN NaN NaN 45.466 1 48.71 48.21 49.21 3.2441 0 0 0 0.36505 1 9636 9636 7.2892 0.93513 1 + 6321 17513 3881 3885 7876 7876 -0.0526072538561948 ESDINSVRY 9 Unmodified _ESDINSVRY_ 0 0 0 ENST00000559541.1_1_15:52416976-52428016:-|nuORF;nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 541.7599487304688 2 541.759278 1081.504 -0.023564 -1.2766E-05 0.42302 0.00022918 0.39946 0.00021641 541.7594800318541 33.206 0.56077 36.905 36.649 37.209 3.6983 83 37 3 0 0 0 0.088679 2 5805 5805;5848 36.506 12.486 1 137970 6322 1062 3882 3886 7877;7878 7877 -0.033489296670495605 ESDINSVRY 9 Unmodified _ESDINSVRY_ 0 0 0 ENST00000559541.1_1_15:52416976-52428016:-|nuORF;nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 541.7596435546875 2 541.759278 1081.504 0.0057136 3.0954E-06 0.48032 0.00026022 0.48603 0.00026331 541.7594687327031 33.418 0.54034 36.858 36.617 37.157 3.4398 94 39 3 0 0 0 0.074399 3 5913 5869;5913;5954 39.95 14.55 1 137740 6323 1062 3882 3886 7879;7880;7881 7880 -0.033489296670495605 ESDINSVRY 9 Unmodified _ESDINSVRY_ 0 0 0 ENST00000559541.1_1_15:52416976-52428016:-|nuORF;nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 ENST00000559541.1_1_15:52416976-52428016:-|nuORF ENST00000559541.1_1_15:52416976-52428016:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 541.7596435546875 2 541.759278 1081.504 -0.1484 -8.0398E-05 0.45749 0.00024785 0.30909 0.00016745 541.7594020473396 33.588 0.63019 36.862 36.603 37.234 3.2748 76 45 2 0 0 0 0.23293 3 6006 5967;6006;6049 18.146 8.0724 1 145040 6324 1062 3882 3886 7882;7883;7884 7883 -0.033489296670495605 ESDLYRAVQ 9 Unmodified _ESDLYRAVQ_ 0 0 0 ENSG00000115904.14,SOS1,chr2,-,I4.1,39056867,39058672|28|8.91|2|intron;ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904.14,SOS1,chr2,-,I4.1,39056867,39058672|28|8.91|2|intron ENSG00000115904.14,SOS1,chr2,-,I4.1,39056867,39058672|28|8.91|2|intron MSMS UPN47_class_I_Rep_3 4 540.7701416015625 2 540.769645 1079.52474 NaN NaN NaN NaN NaN NaN NaN 53.989 1 57.175 56.675 57.675 3.1856 0 0 0 0.22485 1 12222 12222 14.838 0 1 6325 2149 3883 3887 7885 7885 -0.011843392873743142 ESEDEHKK 8 Unmodified _ESEDEHKK_ 0 0 0 REV__ENSG00000130226|ENST00000377770|DPP6 REV__ENSG00000130226|ENST00000377770|DPP6 MSMS UPN48_class_I_Rep_2 6 500.8349914550781 2 501.230353 1000.44615 NaN NaN NaN NaN NaN NaN NaN 73.48 1 77.058 76.558 77.558 3.5779 0 0 0 0.40643 1 17254 17254 2.0598 0.40713 1 + 6326 18932 3884 3888 7886 7886 -0.054051915924674176 ESEKHTANY 9 Unmodified _ESEKHTANY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS UPN47_class_I_Rep_1 2 539.7431030273438 2 539.743628 1077.4727 -0.10945 -5.9073E-05 -0.61774 -0.00033342 -0.72719 -0.0003925 539.7431508911113 12.967 0.33651 16.417 16.317 16.654 3.45 59 28 4 0 0 0 0.38714 1 198 198 8.7454 8.7454 1 141700 6327 3133 3885 3889 7887 7887 -0.06293502701146281 ESEKHTANY 9 Unmodified _ESEKHTANY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 539.743628 1077.4727 0.0018395 9.9287E-07 -0.8238 -0.00044464 -0.82196 -0.00044365 539.7430693786285 13.026 0.29761 16.414 16.312 16.61 3.388 0.07536 -0.00011697 NaN 8.7454 60 27 3 NaN NaN NaN NaN 0 NaN NaN 0 187290 6328 3133 3885 3889 -0.06293502701146281 ESEKHTANY 9 Unmodified _ESEKHTANY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 539.743628 1077.4727 -0.4609 -0.00024877 -0.59539 -0.00032136 -1.0563 -0.00057013 539.7432349445006 12.811 0.29313 16.185 16.081 16.374 3.3734 -0.1536 0.00012959 NaN 8.7454 63 33 2 NaN NaN NaN NaN 0 NaN NaN 0 69343 6329 3133 3885 3889 -0.06293502701146281 ESEVFKKWS 9 Unmodified _ESEVFKKWS_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-3|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-3|DNAH9 MSMS UPN47_class_I_Rep_1 2 570.290283203125 2 570.290214 1138.56587 NaN NaN NaN NaN NaN NaN NaN 52.558 1 56.117 55.617 56.617 3.5585 0 0 0 0.32573 1 11704 11704 9.3831 0.035688 1 + 6330 17544 3886 3890 7888 7888 0.0021342175209611014 ESEYGNITY 9 Unmodified _ESEYGNITY_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-SECPEP UPN47_class_I_Rep_1 2 538.7860717773438 2 538.232561 1074.45057 0.1985 0.00010684 0.35719 0.00019225 0.55569 0.00029909 538.2324693936702 48.337 0.53613 52.019 51.739 52.275 3.6819 56 31 3 0 0 0 0.047208 1 10404 10404 38.176 13.502 1 102390 6331 1983 3887 3891 7889 7889 -0.08367727169547834 ESEYGNITY 9 Unmodified _ESEYGNITY_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-SECPEP UPN47_class_I_Rep_2 3 538.7861938476562 2 538.232561 1074.45057 0.31807 0.00017119 0.19524 0.00010509 0.51331 0.00027628 538.2325616071735 48.633 0.47885 51.98 51.721 52.2 3.3465 39 23 2 0 0 0 0.043932 1 10501 10501 41.956 25.013 1 123340 6332 1983 3887 3891 7890 7890 -0.08367727169547834 ESEYGNITY 9 Unmodified _ESEYGNITY_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-SECPEP UPN47_class_I_Rep_3 4 538.7863159179688 2 538.232561 1074.45057 0.39231 0.00021115 0.0822 4.4242E-05 0.47451 0.00025539 538.2323689055988 48.666 0.62172 51.901 51.628 52.249 3.2345 60 31 3 0 0 0 0.073107 1 10574 10574 29.082 8.628 1 113280 6333 1983 3887 3891 7891 7891 -0.08367727169547834 ESFCYPLEE 9 Unmodified _ESFCYPLEE_ 0 0 0 REV__L1MB3_dup1442|chr1:236806568-236807182:-|1.31397173046135|0.3401043967354972|1.95|151.0|44|3|anti-sense REV__L1MB3_dup1442|chr1:236806568-236807182:-|1.31397173046135|0.3401043967354972|1.95|151.0|44|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.7317504882812 2 558.73134 1115.44813 0.63482 0.0003547 1.1737 0.00065576 1.8085 0.0010105 558.7318531918488 106.8 0.085503 110.33 110.26 110.34 3.5345 12 12 2 0 0 0 0.48643 1 25852 25852 2.0598 0 1 155470 + 6334 25825 3888 3892 7892 7892 -0.10497898898893254 ESFCYPLEE 9 Unmodified _ESFCYPLEE_ 0 0 0 REV__L1MB3_dup1442|chr1:236806568-236807182:-|1.31397173046135|0.3401043967354972|1.95|151.0|44|3|anti-sense REV__L1MB3_dup1442|chr1:236806568-236807182:-|1.31397173046135|0.3401043967354972|1.95|151.0|44|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 558.73134 1115.44813 0.51521 0.00028786 1.9939 0.001114 2.5091 0.0014019 558.7319729462673 106.25 0.073967 109.96 109.94 110.01 3.7088 -0.1873 0.00051108 NaN 2.0598 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 148930 + 6335 25825 3888 3892 -0.10497898898893254 ESFIDTQKF 9 Unmodified _ESFIDTQKF_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 557.7745971679688 2 557.774396 1113.53424 0.46522 0.00025949 1.1668 0.00065081 1.632 0.00091029 557.7741396892428 67.823 0.65167 71.331 71.096 71.748 3.5077 133 60 3 0 0 0 0.099407 1 15538 15538 19.257 0 1 333760 6336 1110 3889 3893 7893 7893 -0.017985710018365353 ESFLVNFIF 9 Unmodified _ESFLVNFIF_ 0 0 0 L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|62|1|anti-sense L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|62|1|anti-sense L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2913208007812 2 558.292225 1114.5699 NaN NaN NaN NaN NaN NaN NaN 24.071 1 27.536 27.036 28.036 3.4655 0 0 0 0.39518 1 3132 3132 1.8442 0 1 6337 12911 3890 3894 7894 7894 0.01719511245778449 ESFSLIPGNH 10 Unmodified _ESFSLIPGNH_ 0 0 0 REV__nc|ENSG00000054392|Q5VTY9-5|HHAT REV__nc|ENSG00000054392|Q5VTY9-5|HHAT MULTI-MSMS UPN47_class_I_Rep_1 2 550.7721557617188 2 550.772188 1099.52982 0.39035 0.000215 -0.43879 -0.00024167 -0.048435 -2.6676E-05 550.7720946857578 56.084 0.9861 59.563 59.212 60.198 3.4785 116 58 3 0 0 0 0.52083 2 12786 12786;12826 9.3831 1.473 1 436250 + 6338 17690 3891 3895 7895;7896 7895 -0.015960354247454234 ESFVFLCVF 9 Unmodified _ESFVFLCVF_ 0 0 0 REV__L1MB3_dup13096|chr14:71422335-71426478:-|2.3781066562084856|0.0434148222190023|5.78|151.0|235|2|anti-sense REV__L1MB3_dup13096|chr14:71422335-71426478:-|2.3781066562084856|0.0434148222190023|5.78|151.0|235|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 545.3168334960938 2 545.767529 1089.5205 0.50835 0.00027744 0.22358 0.00012202 0.73193 0.00039946 545.767517295466 81.278 0.103 84.963 84.919 85.022 3.685 24 13 2 0 0 0 0.11425 1 19248 19248 12.532 3.1841 1 164990 + 6339 25818 3892 3896 7897 7897 -0.02067520034665904 ESFYGIGTTR 10 Unmodified _ESFYGIGTTR_ 0 0 0 ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 565.7769775390625 2 565.77747 1129.54039 0.42394 0.00023986 -1.0105 -0.00057172 -0.58657 -0.00033187 565.7773009523694 45.285 0.5636 48.801 48.519 49.083 3.5162 80 40 3 0 0 0 0.48801 3 8706 8706;8727;8773 12.873 5.2637 1 184400 6340 6019 3893 3897 7898;7899;7900 7898 -0.019200527703333137 ESFYGIGTTR 10 Unmodified _ESFYGIGTTR_ 0 0 0 ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 565.777099609375 2 565.77747 1129.54039 0.40655 0.00023002 0.27623 0.00015629 0.68278 0.0003863 565.7775473173657 44.934 0.49192 48.696 48.502 48.994 3.7617 51 37 2 0 0 0 0.52787 2 8631 8591;8631 8.4443 5.9458 1 155530 6341 6019 3893 3897 7901;7902 7902 -0.019200527703333137 ESFYGIGTTR 10 Unmodified _ESFYGIGTTR_ 0 0 0 ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 565.777099609375 2 565.77747 1129.54039 0.36301 0.00020538 -0.96286 -0.00054476 -0.59985 -0.00033938 565.7773780545865 45.219 0.47592 48.856 48.572 49.048 3.6371 70 32 3 0 0 0 0.42663 4 8609 8574;8584;8609;8662 17.443 5.9479 1 114130 6342 6019 3893 3897 7903;7904;7905;7906 7905 -0.019200527703333137 ESFYGIGTTR 10 Unmodified _ESFYGIGTTR_ 0 0 0 ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF MSMS UPN48_class_I_Rep_3 7 565.814208984375 2 565.77747 1129.54039 NaN NaN NaN NaN NaN NaN NaN 45.459 1 49.096 48.596 49.596 3.6369 0 0 0 0.53105 1 8706 8706 2.4985 0 1 6343 6019 3893 3897 7907 7907 -0.019200527703333137 ESGFFFFLT 9 Unmodified _ESGFFFFLT_ 0 0 0 L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|129|3|anti-sense L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|129|3|anti-sense L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|129|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.7625122070312 2 547.7633 1093.51205 -0.085969 -4.7091E-05 -0.20124 -0.00011023 -0.28721 -0.00015732 547.7632439608655 12.858 0.17933 16.308 16.218 16.397 3.45 20 14 2 0 0 0 0.48846 1 166 166 1.8442 0.19162 1 49952 6344 12338 3894 3898 7908 7908 -0.030967506796287125 ESGFFFFLT 9 Unmodified _ESGFFFFLT_ 0 0 0 L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|129|3|anti-sense L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|129|3|anti-sense L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|129|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.7635498046875 2 547.7633 1093.51205 -0.45128 -0.0002472 0.49503 0.00027116 0.043749 2.3964E-05 547.7636459452641 12.839 0.2552 16.212 16.119 16.374 3.3734 40 28 2 0 0 0 0.48846 2 164 164;181 1.8442 0.19162 1 59137 6345 12338 3894 3898 7909;7910 7909 -0.030967506796287125 ESGIFVLFFA 10 Unmodified _ESGIFVLFFA_ 0 0 0 REV__ENSG00000280314|ENST00000641662|OR8K3 REV__ENSG00000280314|ENST00000641662|OR8K3 MSMS UPN48_class_I_Rep_1 5 565.298583984375 2 565.30005 1128.58555 NaN NaN NaN NaN NaN NaN NaN 108.74 1 112.37 111.87 112.87 3.6321 0 0 0 0.53105 1 26337 26337 7.2892 1.0834 1 + 6346 21448 3895 3899 7911 7911 0.026397977628676017 ESGPSIVHR 9 Unmodified _ESGPSIVHR_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN48_class_I_Rep_3 7 491.2589416503906 2 491.259248 980.503943 0.12573 6.1765E-05 -0.37466 -0.00018406 -0.24893 -0.00012229 491.25899696729545 20.356 0.90181 24.023 23.515 24.417 3.6667 183 91 3 0 0 0 0.37599 3 1650 1650;1715;1749 9.3831 2.66 1 163100 6347 1146 3896 3900 7912;7913;7914 7912 0.012911151236153273 ESGPSIVHR 9 Unmodified _ESGPSIVHR_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 491.259248 980.503943 0.27208 0.00013366 -0.48829 -0.00023988 -0.21621 -0.00010621 491.25892941578377 20.317 0.89707 23.863 23.51 24.407 3.5453 0.013869 1.0544E-05 NaN 9.3831 223 107 3 NaN NaN NaN NaN 0 NaN NaN 0 184030 6348 1146 3896 3900 0.012911151236153273 ESGPSIVHR 9 Unmodified _ESGPSIVHR_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 491.259248 980.503943 0.34194 0.00016798 -0.63486 -0.00031188 -0.29291 -0.0001439 491.2588886035354 20.011 0.84631 23.66 23.307 24.154 3.6497 -0.18839 -0.00013346 NaN 9.3831 158 89 2 NaN NaN NaN NaN 0 NaN NaN 0 161160 6349 1146 3896 3900 0.012911151236153273 ESGQIFFYYI 10 Unmodified _ESGQIFFYYI_ 0 0 0 REV__ENST00000473871.1_1_13:37583848-37586479:-|nuORF REV__ENST00000473871.1_1_13:37583848-37586479:-|nuORF MSMS UPN47_class_I_Rep_1 2 633.8063354492188 2 633.805697 1265.59684 NaN NaN NaN NaN NaN NaN NaN 13.399 1 16.856 16.356 17.356 3.457 0 0 0 0.53105 1 322 322 1.3295 0.13619 1 + 6350 22517 3897 3901 7915 7915 -0.02533424933653805 ESGSQRLHELR 11 Unmodified _ESGSQRLHELR_ 0 0 0 AluJb_dup88090|chr13:19714492-19714794:-|1.05418454633119|0.0328678027443032|5.0|151.0|3|1|sense AluJb_dup88090|chr13:19714492-19714794:-|1.05418454633119|0.0328678027443032|5.0|151.0|3|1|sense AluJb_dup88090|chr13:19714492-19714794:-|1.05418454633119|0.0328678027443032|5.0|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.232666015625 3 437.89698 1310.66911 0.021031 9.2094E-06 4.048 0.0017726 4.069 0.0017818 438.2325718942892 31.626 0.037388 35.16 35.136 35.173 3.5342 4 2 2 0 0 0 0.6724 1 4707 4707 1.2148 0.4383 1 33483 6351 77 3898 3902 7916 7916 0.02620302192622148 ESGYVEIEDVE 11 Unmodified _ESGYVEIEDVE_ 0 0 0 REV__ENSG00000071894|ENST00000616140|CPSF1 REV__ENSG00000071894|ENST00000616140|CPSF1 MSMS UPN47_class_I_Rep_1 2 634.7776489257812 2 634.780073 1267.54559 NaN NaN NaN NaN NaN NaN NaN 54.37 1 57.871 57.371 58.371 3.5014 0 0 0 0.38417 1 12259 12259 1.1933 0.12188 1 + 6352 17816 3899 3903 7917 7917 -0.0774783848903553 ESHHAALAF 9 Unmodified _ESHHAALAF_ 0 0 0 nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A;ENST00000485596.5_1_15:85634092-85681131:+|nuORF nc|ENSG00000073417|O60658-6|PDE8A nc|ENSG00000073417|O60658-6|PDE8A MSMS UPN48_class_I_Rep_3 7 491.7422180175781 2 491.740691 981.466829 NaN NaN NaN NaN NaN NaN NaN 39.419 1 43.075 42.575 43.575 3.6557 0 0 0 0.26661 1 6894 6894 12.532 2.4576 1 6353 1115 3900 3904 7918 7918 -0.024645564221486893 ESHLEFGLGLY 11 Unmodified _ESHLEFGLGLY_ 0 0 0 L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|119|1|anti-sense L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|119|1|anti-sense L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|119|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 632.8141479492188 2 632.814053 1263.61355 0.36813 0.00023296 -0.1374 -8.6946E-05 0.23074 0.00014601 632.8138088235619 52.943 0.16729 56.502 56.372 56.539 3.5585 13 8 2 0 0 0 0.65559 1 11831 11831 2.7352 0.23671 1 71267 6354 12253 3901 3905 7919 7919 -0.007709240476970081 ESHLFPEVY 9 Unmodified _ESHLFPEVY_ 0 0 0 REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.76904296875 2 560.769114 1119.52368 0.32692 0.00018333 0.010009 5.613E-06 0.33693 0.00018894 560.7691931403193 53.619 0.70994 57.146 56.963 57.673 3.5278 63 42 2 0 0 0 0.33654 1 12054 12054 11.64 0 1 71186 + 6355 24292 3902 3906 7920 7920 -0.0313055365627406 ESHLFPEVY 9 Unmodified _ESHLFPEVY_ 0 0 0 REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.7687377929688 2 560.769114 1119.52368 0.51707 0.00028996 -0.15139 -8.4896E-05 0.36568 0.00020506 560.7690639803045 54.001 0.73587 57.32 57.094 57.83 3.3187 64 41 2 0 0 0 0.25207 2 12179 12179;12241 16.942 0 1 77251 + 6356 24292 3902 3906 7921;7922 7921 -0.0313055365627406 ESHLFPEVY 9 Unmodified _ESHLFPEVY_ 0 0 0 REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 560.769114 1119.52368 0.32692 0.00018333 0.010009 5.613E-06 0.33693 0.00018894 560.7691931403193 53.619 0.70994 57.146 56.963 57.673 3.5278 -0.086952 6.8549E-05 NaN 16.942 63 42 2 NaN NaN NaN NaN 0 NaN NaN 0 71186 + 6357 24292 3902 3906 -0.0313055365627406 ESHLFPEVY 9 Unmodified _ESHLFPEVY_ 0 0 0 REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense REV__L1M3_dup2411|chr6:163464335-163465347:+|1.961454088515415|0.0391997166988859|5.64|151.0|63|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 560.769114 1119.52368 0.51707 0.00028996 -0.15139 -8.4896E-05 0.36568 0.00020506 560.7690639803045 54.001 0.73587 57.32 57.094 57.83 3.3187 0.086952 -0.00011247 NaN 16.942 64 41 2 NaN NaN NaN NaN 0 NaN NaN 0 77251 + 6358 24292 3902 3906 -0.0313055365627406 ESHSYNVIIY 10 Unmodified _ESHSYNVIIY_ 0 0 0 REV__L1MA5A_dup295|chr2:23723507-23724407:+|1.5475462040104593|0.0406530729053617|5.25|151.0|33|1|anti-sense REV__L1MA5A_dup295|chr2:23723507-23724407:+|1.5475462040104593|0.0406530729053617|5.25|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 612.7974243164062 2 612.798403 1223.58225 0.50906 0.00031195 -0.13634 -8.3547E-05 0.37272 0.0002284 612.7981809124057 51.607 0.81588 54.945 54.617 55.433 3.3386 95 40 3 0 0 0 0.55148 1 11556 11556 5.2969 0.39987 1 265380 + 6359 25418 3903 3907 7923 7923 -0.020594970817910507 ESIDQYIER 9 Unmodified _ESIDQYIER_ 0 0 0 nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1 nc|ENSG00000137804|Q9BXS6-7|NUSAP1 nc|ENSG00000137804|Q9BXS6-7|NUSAP1 MULTI-MSMS UPN48_class_I_Rep_2 6 576.7796630859375 2 576.78021 1151.54587 0.39239 0.00022632 -0.070516 -4.0672E-05 0.32187 0.00018565 576.7803068083497 45.541 0.31918 49.299 49.082 49.401 3.7579 34 24 2 0 0 0 0.35123 1 8767 8767 10.8 4.5937 1 87240 6360 3040 3904 3908 7924 7924 -0.023843739785206708 ESIGEFRDIY 10 Unmodified _ESIGEFRDIY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS UPN47_class_I_Rep_3 4 614.796142578125 2 614.79586 1227.57717 0.35448 0.00021793 0.50803 0.00031233 0.86251 0.00053026 614.7960976741346 47.42 0.66275 50.661 50.308 50.971 3.2405 120 53 3 0 0 0 0.46994 1 10312 10312 21.537 7.6309 1 415670 + 6361 18664 3905 3909 7925 7925 -0.027518009444293057 ESIKGINF 8 Unmodified _ESIKGINF_ 0 0 0 REV__L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|31|2|sense REV__L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.2476501464844 2 454.247818 906.481082 -0.25957 -0.00011791 -0.80095 -0.00036383 -1.0605 -0.00048174 454.2476029352993 43.411 0.68662 47.098 46.791 47.477 3.6875 79 38 3 0 0 0 0.82752 1 9012 9012 11.64 1.5664 1 99853 + 6362 25207 3906 3910 7926 7926 0.024100960061332444 ESIKGINF 8 Unmodified _ESIKGINF_ 0 0 0 REV__L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|31|2|sense REV__L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.2477111816406 2 454.247818 906.481082 -0.24798 -0.00011264 -0.51635 -0.00023455 -0.76433 -0.00034719 454.2474805819771 43.867 0.075802 47.562 47.507 47.583 3.6951 5 4 2 0 0 0 0.82752 1 9070 9070 7.2892 0 1 21916 + 6363 25207 3906 3910 7927 7927 0.024100960061332444 ESIKKFDLLI 10 Unmodified _ESIKKFDLLI_ 0 0 0 REV__L1M7_dup181|chr1:211820360-211821065:+|2.001248937851987|0.0389969656361234|5.68|151.0|18|3|sense REV__L1M7_dup181|chr1:211820360-211821065:+|2.001248937851987|0.0389969656361234|5.68|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 402.57440185546875 3 402.576185 1204.70673 NaN NaN NaN NaN NaN NaN NaN 98.259 1 98.259 97.759 98.759 0 0 0 0 0.53105 1 23922 23922 0.77653 0.54069 1 + 6364 24733 3907 3911 7928 7928 0.11256000405523992 ESILDTALAP 10 Unmodified _ESILDTALAP_ 0 0 0 REV__AluJb_dup114477|chr19:8540993-8541152:-|1.7506182964995949|0.2657089984742508|2.72|151.0|8|3|sense REV__AluJb_dup114477|chr19:8540993-8541152:-|1.7506182964995949|0.2657089984742508|2.72|151.0|8|3|sense MSMS UPN48_class_I_Rep_1 5 515.2770385742188 2 515.276772 1028.53899 NaN NaN NaN NaN NaN NaN NaN 50.519 1 54.044 53.544 54.544 3.5246 0 0 0 0.53105 1 10325 10325 6.2058 1.4498 1 + 6365 16919 3908 3912 7929 7929 0.025863131408868867 ESINYFGKY 9 Unmodified _ESINYFGKY_ 0 0 0 L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|332|3|anti-sense;L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|335|3|anti-sense;L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|86|2|anti-sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|332|3|anti-sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|332|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.76953125 2 560.769114 1119.52368 0.32692 0.00018333 0.010009 5.613E-06 0.33693 0.00018894 560.7691931403193 53.619 0.70994 57.146 56.963 57.673 3.5278 63 42 2 0 0 0 0.31407 1 12096 12096 13.042 1.4022 1 71186 6366 14700 3909 3913 7930 7930 -0.0313055365627406 ESINYFGKY 9 Unmodified _ESINYFGKY_ 0 0 0 L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|332|3|anti-sense;L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|335|3|anti-sense;L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|86|2|anti-sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|332|3|anti-sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|332|3|anti-sense MSMS UPN47_class_I_Rep_3 4 560.770263671875 2 560.769114 1119.52368 NaN NaN NaN NaN NaN NaN NaN 54.074 1 57.259 56.759 57.759 3.1856 0 0 0 0.25702 1 12248 12248 13.042 0.80181 1 6367 14700 3909 3913 7931 7931 -0.0313055365627406 ESISFFSFF 9 Unmodified _ESISFFSFF_ 0 0 0 MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|5|1|sense MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|5|1|sense MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 555.7608642578125 2 555.760758 1109.50696 NaN NaN NaN NaN NaN NaN NaN 87.127 1 90.568 90.068 91.068 3.4407 0 0 0 0.22485 1 21659 21659 14.838 0 1 6368 16506 3910 3914 7932 7932 -0.043410545422375435 ESISFWIDY 9 Unmodified _ESISFWIDY_ 0 0 0 REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|123|2|anti-sense REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|123|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 580.2691650390625 2 580.268947 1158.52334 0.35375 0.00020527 1.0807 0.00062707 1.4344 0.00083234 580.268788280759 70.982 0.94491 74.357 73.963 74.908 3.3751 193 80 4 0 0 0 0.09884 5 17281 17281;17352;17394;17416;17437 34.102 34.102 1 811600 + 6369 30532 3911 3915 7933;7934;7935;7936;7937 7933 -0.04957973376122027 ESISFWIDY 9 Unmodified _ESISFWIDY_ 0 0 0 REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|123|2|anti-sense REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|123|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 580.2687377929688 2 580.268947 1158.52334 0.41872 0.00024297 0.040755 2.3649E-05 0.45947 0.00026662 580.2687186339421 71.178 1.0084 74.468 74.083 75.092 3.2899 254 88 4 0 0 0 0.13631 6 17384 17295;17309;17347;17384;17423;17459 26.884 26.884 1 779430 + 6370 30532 3911 3915 7938;7939;7940;7941;7942;7943 7941 -0.04957973376122027 ESISFWIDY 9 Unmodified _ESISFWIDY_ 0 0 0 REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|123|2|anti-sense REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|123|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 580.26904296875 2 580.268947 1158.52334 0.45019 0.00026123 0.50703 0.00029421 0.95721 0.00055544 580.2687203689018 71.218 0.983 74.436 74.026 75.009 3.2188 212 82 4 0 0 0 0.13631 6 17476 17393;17403;17476;17511;17555;17603 26.884 26.884 1 929780 + 6371 30532 3911 3915 7944;7945;7946;7947;7948;7949 7946 -0.04957973376122027 ESKNNYIIRYR 11 Unmodified _ESKNNYIIRYR_ 0 0 0 L1MD1_dup4788|chr11:78408999-78409302:+|1.5820427391219036|0.0037310490300934|8.73|150.0|11|3|sense L1MD1_dup4788|chr11:78408999-78409302:+|1.5820427391219036|0.0037310490300934|8.73|150.0|11|3|sense L1MD1_dup4788|chr11:78408999-78409302:+|1.5820427391219036|0.0037310490300934|8.73|150.0|11|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 485.9281921386719 3 485.92828 1454.76301 0.15211 7.3913E-05 -0.41675 -0.00020251 -0.26465 -0.0001286 486.26239338635673 35.922 0.46977 35.922 35.628 36.098 0 55 33 2 0 0 0 0.65674 3 6565 6553;6565;6596 2.6312 1.4164 1 142360 6372 11956 3912 3916 7950;7951;7952 7951 0.05382021294894912 ESKNSCHSVT 10 Unmodified _ESKNSCHSVT_ 0 0 0 REV__L1PA13_dup439|chr1:213198908-213200851:+|2.178737758477973|0.0426751482469122|5.67|151.0|31|2|sense REV__L1PA13_dup439|chr1:213198908-213200851:+|2.178737758477973|0.0426751482469122|5.67|151.0|31|2|sense MSMS UPN47_class_I_Rep_2 3 546.2426147460938 2 546.242938 1090.47132 NaN NaN NaN NaN NaN NaN NaN 111.54 1 115.06 114.56 115.56 3.5226 0 0 0 0.53105 1 27151 27151 1.4819 0 1 + 6373 29101 3913 3917 7953 7953 -0.07029460061539794 ESKPKVLF 8 Unmodified _ESKPKVLF_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS UPN46_class_I_Rep_3 1 474.2822265625 2 474.28166 946.548768 -0.15462 -7.3335E-05 1.6527 0.00078385 1.4981 0.00071052 474.28234625334636 23.452 0.056454 23.452 23.441 23.497 0 8 3 3 0 0 0 0.82752 1 2946 2946 5.7604 0 1 390460 6374 861 3914 3918 7954 7954 0.07335545936950894 ESKRNPRN 8 Unmodified _ESKRNPRN_ 0 0 0 L1MCa_dup325|chr1:175974445-175974745:+|1.2774927594549268|0.0242357540925428|5.72|151.0|4|1|sense L1MCa_dup325|chr1:175974445-175974745:+|1.2774927594549268|0.0242357540925428|5.72|151.0|4|1|sense L1MCa_dup325|chr1:175974445-175974745:+|1.2774927594549268|0.0242357540925428|5.72|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 500.7665710449219 2 500.767771 999.52099 NaN NaN NaN NaN NaN NaN NaN 112.31 1 115.97 115.47 116.47 3.6648 0 0 0 0.40643 1 26750 26750 2.0598 0.21551 1 6375 11794 3915 3919 7955 7955 0.021210357294194182 ESKTREYYE 9 Unmodified _ESKTREYYE_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MSMS UPN47_class_I_Rep_1 2 602.7781372070312 2 602.777667 1203.54078 NaN NaN NaN NaN NaN NaN NaN 39.584 1 43.251 42.751 43.751 3.6668 0 0 0 0.39428 1 7757 7757 2.0598 0.40713 1 6376 3202 3916 3920 7956 7956 -0.05284677841154917 ESLAAFRN 8 Unmodified _ESLAAFRN_ 0 0 0 ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2 ENST00000488401.5_1_3:183993962-184009147:+|nuORF ENST00000488401.5_1_3:183993962-184009147:+|nuORF MSMS UPN47_class_I_Rep_2 3 454.24774169921875 2 454.235242 906.45593 NaN NaN NaN NaN NaN NaN NaN 43.783 1 47.141 46.641 47.641 3.358 0 0 0 0.39819 1 9066 9066 8.5933 3.3626 1 6377 3387 3917 3921 7957 7957 -0.0010395879643283479 ESLGFPWYI 9 Unmodified _ESLGFPWYI_ 0 0 0 L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|90|2|anti-sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|90|2|anti-sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2744750976562 2 556.276575 1110.5386 NaN NaN NaN NaN NaN NaN NaN 40.785 1 44.457 43.957 44.957 3.6719 0 0 0 0.39326 1 8124 8124 2.3027 0.4585 1 6378 15269 3918 3922 7958 7958 -0.01225061788295534 ESLHAQKRF 9 Unmodified _ESLHAQKRF_ 0 0 0 REV__nc|ENSG00000186446|Q96CX3-2|ZNF501 REV__nc|ENSG00000186446|Q96CX3-2|ZNF501 MSMS UPN48_class_I_Rep_3 7 558.7613525390625 2 558.301447 1114.58834 NaN NaN NaN NaN NaN NaN NaN 40.375 1 44.026 43.526 44.526 3.6509 0 0 0 0.39598 1 7171 7171 1.6526 0 1 + 6379 20890 3919 3923 7959 7959 0.03563065940375054 ESLKNIFG 8 Unmodified _ESLKNIFG_ 0 0 0 L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|60|2|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|60|2|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|60|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 454.2474060058594 2 454.247818 906.481082 -0.40683 -0.0001848 -0.54187 -0.00024614 -0.94869 -0.00043094 454.2477637673747 43.776 0.79979 47.134 46.711 47.51 3.358 84 43 3 0 0 0 0.82752 1 9111 9111 21.747 0 1 127970 6380 15207 3920 3924 7960 7960 0.024100960061332444 ESMCSYIY 8 Unmodified _ESMCSYIY_ 0 0 0 L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|73|3|sense L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|73|3|sense L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|73|3|sense MSMS UPN48_class_I_Rep_3 7 498.19384765625 2 498.196079 994.377605 NaN NaN NaN NaN NaN NaN NaN 25.33 1 29.099 28.599 29.599 3.769 0 0 0 0.4044 1 3064 3064 4.756 1.1595 1 6381 10063 3921 3925 7961 7961 -0.11980895488193255 ESMLNFVKY 9 Unmodified _ESMLNFVKY_ 0 0 0 L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|94|2|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|94|2|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|94|2|anti-sense MSMS UPN47_class_I_Rep_3 4 565.7720336914062 2 565.781167 1129.54778 NaN NaN NaN NaN NaN NaN NaN 37.408 1 40.655 40.155 41.155 3.247 0 0 0 0.29868 1 7170 7170 10.824 0.75 1 6382 10411 3922 3926 7962 7962 -0.011810364942675733 ESNWECEEET 10 Unmodified _ESNWECEEET_ 0 0 0 REV__ENSG00000186310|ENST00000373079|NAP1L3 REV__ENSG00000186310|ENST00000373079|NAP1L3 MSMS UPN47_class_I_Rep_3 4 628.2265625 2 628.224607 1254.43466 NaN NaN NaN NaN NaN NaN NaN 50.879 1 54.096 53.596 54.596 3.2163 0 0 0 0.53105 1 11278 11278 1.4819 0.95714 1 + 6383 20887 3923 3927 7963 7963 -0.1823780146878562 ESPEPGRW 8 Unmodified _ESPEPGRW_ 0 0 0 AluSx_dup80007|chr13:28088290-28088577:-|1.1725192860235871|0.0012707519738513|9.85|149.0|10|3|sense;AluSq2_dup51840|chr17:43226969-43227277:-|1.1204540976366903|0.0978673526852838|3.52|151.0|10|3|sense AluSx_dup80007|chr13:28088290-28088577:-|1.1725192860235871|0.0012707519738513|9.85|149.0|10|3|sense AluSx_dup80007|chr13:28088290-28088577:-|1.1725192860235871|0.0012707519738513|9.85|149.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 479.2259826660156 2 479.224874 956.435195 NaN NaN NaN NaN NaN NaN NaN 14.051 1 14.051 13.551 14.551 0 0 0 0 0.40643 1 538 538 2.0598 1.2661 1 6384 263 3924 3928 7964 7964 -0.044765491760927034 ESPRRITQL 9 Unmodified _ESPRRITQL_ 0 0 0 REV__ENST00000398204.8_1_7:87825837-87825987:+|nuORF REV__ENST00000398204.8_1_7:87825837-87825987:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 549.7953491210938 2 550.314554 1098.61456 0.52168 0.00028709 0.047796 2.6303E-05 0.56947 0.00031339 550.3144550099994 71.33 0.39609 74.796 74.743 75.14 3.466 56 33 3 0 0 0 0.1154 1 16755 16755 13.042 13.042 1 275620 + 6385 22140 3925 3929 7965 7965 0.06919335111865621 ESPRRITQL 9 Unmodified _ESPRRITQL_ 0 0 0 REV__ENST00000398204.8_1_7:87825837-87825987:+|nuORF REV__ENST00000398204.8_1_7:87825837-87825987:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 549.795166015625 2 550.314554 1098.61456 0.47105 0.00025922 -0.10602 -5.8345E-05 0.36503 0.00020088 550.314275661454 71.236 0.44586 74.754 74.677 75.123 3.5185 70 39 2 0 0 0 0.1154 1 16539 16539 13.042 2.2185 1 342170 + 6386 22140 3925 3929 7966 7966 0.06919335111865621 ESQSLKTKY 9 Unmodified _ESQSLKTKY_ 0 0 0 L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|59|3|sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|59|3|sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|59|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.2877197265625 2 542.287671 1082.56079 -0.10018 -5.4324E-05 0.2559 0.00013877 0.15572 8.4446E-05 542.2876998999913 20.571 0.40727 20.571 20.302 20.71 0 65 40 2 0 0 0 0.33908 1 2121 2121 11.495 1.3441 1 74683 6387 13772 3926 3930 7967 7967 0.022811178894926343 ESQSVTPKP 9 Unmodified _ESQSVTPKP_ 0 0 0 nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000514023.5_1_3:125743683-125802950:-|nuORF nc|ENSG00000114544|Q96GZ6-6|SLC41A3 nc|ENSG00000114544|Q96GZ6-6|SLC41A3 MSMS UPN47_class_I_Rep_1 2 486.7548522949219 2 486.753464 971.492375 NaN NaN NaN NaN NaN NaN NaN 49.269 1 52.928 52.428 53.428 3.6592 0 0 0 0.37476 1 10702 10702 6.7232 0 1 6388 2080 3927 3931 7968 7968 0.005488733096285614 ESRAPPQDYC 10 Unmodified _ESRAPPQDYC_ 0 0 0 MER5A1_dup5773|chr6:24849583-24849749:-|1.0199881587220836|0.102384696003535|3.32|151.0|2|1|sense MER5A1_dup5773|chr6:24849583-24849749:-|1.0199881587220836|0.102384696003535|3.32|151.0|2|1|sense MER5A1_dup5773|chr6:24849583-24849749:-|1.0199881587220836|0.102384696003535|3.32|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 583.2515869140625 2 583.250763 1164.48697 NaN NaN NaN NaN NaN NaN NaN 54.279 1 57.86 57.36 58.36 3.5817 0 0 0 0.53105 1 11457 11457 2.4985 0.65425 1 6389 16148 3928 3932 7969 7969 -0.0886917354448542 ESRLHDAWRL 10 Unmodified _ESRLHDAWRL_ 0 0 0 REV__AluSx1_dup19469|chr3:50025144-50025438:+|1.2241448226281189|0.0117504322901004|6.7|151.0|2|1|sense REV__AluSx1_dup19469|chr3:50025144-50025438:+|1.2241448226281189|0.0117504322901004|6.7|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 641.8367919921875 2 641.836185 1281.65782 NaN NaN NaN NaN NaN NaN NaN 59.533 1 62.931 62.431 63.431 3.3982 0 0 0 0.53105 1 13831 13831 1.3295 0.13619 1 + 6390 17169 3929 3933 7970 7970 0.028255248891355222 ESRMRYTKTL 10 Unmodified _ESRMRYTKTL_ 0 0 0 REV__nc|ENSG00000187109|P55209-3|NAP1L1 REV__nc|ENSG00000187109|P55209-3|NAP1L1 MSMS UPN46_class_I_Rep_3 1 642.8406372070312 2 642.840079 1283.66561 NaN NaN NaN NaN NaN NaN NaN 89.999 1 89.999 89.499 90.499 0 0 0 0 0.53105 1 21682 21682 1.4819 0 1 + 6391 20920 3930 3934 7971 7971 0.03511916094385015 ESRNLRRY 8 Unmodified _ESRNLRRY_ 0 0 0 L1MB3_dup1710|chr2:32345933-32346565:-|1.0888871759080443|0.0074283546167494|7.2|151.0|21|3|sense L1MB3_dup1710|chr2:32345933-32346565:-|1.0888871759080443|0.0074283546167494|7.2|151.0|21|3|sense L1MB3_dup1710|chr2:32345933-32346565:-|1.0888871759080443|0.0074283546167494|7.2|151.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 547.2975463867188 2 547.296696 1092.57884 NaN NaN NaN NaN NaN NaN NaN 34.727 1 38.153 37.653 38.653 3.4253 0 0 0 0.40738 1 6318 6318 0.79363 0 1 6392 10380 3931 3935 7972 7972 0.03625297654866699 ESRVSYSNI 9 Unmodified _ESRVSYSNI_ 0 0 0 L1M4c_dup995|chr5:75443059-75444089:-|2.279754134061989|0.0322683786727179|6.14|151.0|33|3|sense L1M4c_dup995|chr5:75443059-75444089:-|2.279754134061989|0.0322683786727179|6.14|151.0|33|3|sense L1M4c_dup995|chr5:75443059-75444089:-|2.279754134061989|0.0322683786727179|6.14|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.7611694335938 2 527.76182 1053.50909 0.4092 0.00021596 -0.32764 -0.00017292 0.081554 4.3041E-05 527.7615785981648 50.032 0.75331 53.258 52.957 53.71 3.2262 98 41 3 0 0 0 0.45441 1 11119 11119 4.897 0.36815 1 293440 6393 9084 3932 3936 7973 7973 -0.015526258044246788 ESRWRVYS 8 Unmodified _ESRWRVYS_ 0 0 0 ENST00000423112.2_1_9:3568872-3606712:+|nuORF ENST00000423112.2_1_9:3568872-3606712:+|nuORF ENST00000423112.2_1_9:3568872-3606712:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 541.7722778320312 2 541.772522 1081.53049 -0.34097 -0.00018473 -0.89301 -0.00048381 -1.234 -0.00066854 541.7720589989507 20.889 0.3805 24.239 24.054 24.434 3.3496 42 33 2 0 0 0 0.82752 1 2240 2240 4.3292 0.73274 1 57166 6394 6689 3933 3937 7974 7974 -0.007011959850387939 ESSGLDRSK 9 Unmodified _ESSGLDRSK_ 0 0 0 ENSG00000124659|ENST00000372876|TBCC ENSG00000124659|ENST00000372876|TBCC ENSG00000124659|ENST00000372876|TBCC MULTI-MSMS UPN48_class_I_Rep_1 5 489.74554443359375 2 489.74617 977.477788 0.27483 0.0001346 -0.51799 -0.00025369 -0.24316 -0.00011909 489.7458231434187 18.497 0.37251 22.028 21.719 22.092 3.5313 75 47 2 0 0 0 0.31407 1 1222 1222 13.042 0 1 60577 6395 2480 3934 3938 7975 7975 -0.011851988385160439 ESSLKDDHF 9 Unmodified _ESSLKDDHF_ 0 0 0 REV__ENSG00000135541|ENST00000265602|AHI1 REV__ENSG00000135541|ENST00000265602|AHI1 MULTI-MSMS UPN47_class_I_Rep_1 2 539.2457885742188 2 539.246003 1076.47745 -0.017842 -9.6211E-06 -0.3447 -0.00018588 -0.36254 -0.0001955 539.2457651785314 38.825 0.70751 42.49 42.208 42.916 3.6652 84 45 2 0 0 0 0.17897 1 7533 7533 22.736 3.4793 1 182230 + 6396 19145 3935 3939 7976 7976 -0.0577261855839879 ESSLKDDHF 9 Unmodified _ESSLKDDHF_ 0 0 0 REV__ENSG00000135541|ENST00000265602|AHI1 REV__ENSG00000135541|ENST00000265602|AHI1 MULTI-MSMS UPN47_class_I_Rep_2 3 539.2452392578125 2 539.246003 1076.47745 -0.0031182 -1.6815E-06 -0.30594 -0.00016498 -0.30906 -0.00016666 539.2458029179152 39.229 0.743 42.608 42.253 42.996 3.3785 74 41 2 0 0 0 0.17897 2 7672 7632;7672 22.736 2.9685 1 144340 + 6397 19145 3935 3939 7977;7978 7978 -0.0577261855839879 ESSLKDDHF 9 Unmodified _ESSLKDDHF_ 0 0 0 REV__ENSG00000135541|ENST00000265602|AHI1 REV__ENSG00000135541|ENST00000265602|AHI1 MULTI-MSMS UPN47_class_I_Rep_3 4 539.2459106445312 2 539.246003 1076.47745 -0.06469 -3.4884E-05 -0.24709 -0.00013324 -0.31178 -0.00016813 539.2458989636608 39.301 0.76028 42.539 42.219 42.979 3.238 112 52 3 0 0 0 0.24936 2 7791 7791;7838 17.113 17.113 1 180420 + 6398 19145 3935 3939 7979;7980 7979 -0.0577261855839879 ESSSPPYLKA 10 Unmodified _ESSSPPYLKA_ 0 0 0 REV__ENST00000339656.7_1_19:58371426-58371873:+|nuORF REV__ENST00000339656.7_1_19:58371426-58371873:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 539.2456665039062 2 539.774396 1077.53424 -0.013043 -7.0405E-06 -0.21033 -0.00011353 -0.22337 -0.00012057 539.7741429850432 39.311 0.52277 42.976 42.651 43.173 3.6652 61 35 2 0 0 0 0.84575 1 7575 7575 6.7232 2.3939 1 86354 + 6399 21813 3936 3940 7981 7981 -0.001425710018565951 ESTEQPAL 8 Unmodified _ESTEQPAL_ 0 0 0 REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|6|1|sense REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 437.7107238769531 2 437.711265 873.407977 -0.72761 -0.00031848 0.46758 0.00020466 -0.26004 -0.00011382 437.7113974467825 36.634 0.64228 40.032 39.761 40.403 3.3988 71 48 2 0 0 0 0.82752 1 6911 6911 7.9102 0 1 119200 + 6400 30718 3937 3941 7982 7982 -0.03379077507133843 ESTEQPAL 8 Unmodified _ESTEQPAL_ 0 0 0 REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|6|1|sense REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 437.71112060546875 2 437.711265 873.407977 -0.90339 -0.00039542 0.71891 0.00031467 -0.18448 -8.0749E-05 437.7114857605591 36.678 0.6032 39.925 39.693 40.296 3.247 63 42 2 0 0 0 0.82752 1 6939 6939 7.9102 0 1 98905 + 6401 30718 3937 3941 7983 7983 -0.03379077507133843 ESTEQPAL 8 Unmodified _ESTEQPAL_ 0 0 0 REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|6|1|sense REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|6|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 437.711265 873.407977 -0.38952 -0.0001705 0.086421 3.7828E-05 -0.3031 -0.00013267 437.7112307496103 36.444 0.48319 40.113 39.847 40.33 3.6692 0.089825 -0.00026703 NaN 7.9102 45 36 2 NaN NaN NaN NaN 0 NaN NaN 0 87874 + 6402 30718 3937 3941 -0.03379077507133843 ESTKVPTL 8 Unmodified _ESTKVPTL_ 0 0 0 REV__ENST00000540712.1_1_14:50068361-50081211:+|nuORF REV__ENST00000540712.1_1_14:50068361-50081211:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 437.7474365234375 2 437.74765 873.480748 0.044729 1.958E-05 -0.7291 -0.00031916 -0.68437 -0.00029958 437.7473187571266 33.58 0.31636 37.26 37.073 37.389 3.6797 43 32 2 0 0 0 0.82752 1 5275 5275 6.7232 0 1 64017 + 6403 20122 3938 3942 7984 7984 0.03894676286279264 ESTLHLVL 8 Unmodified _ESTLHLVL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 456.2633056640625 2 456.263468 910.512382 0.059077 2.6955E-05 -0.21117 -9.6349E-05 -0.15209 -6.9394E-05 456.26332642960017 56.683 0.6199 60.141 60.101 60.721 3.4572 89 55 2 0 0 0 0.82752 1 12974 12974 34.187 0 1 903040 6404 3335 3939 3943 7985 7985 0.053546690402299646 ESTLHLVL 8 Unmodified _ESTLHLVL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 456.2634582519531 2 456.263468 910.512382 -0.016371 -7.4696E-06 0.024642 1.1243E-05 0.0082705 3.7735E-06 456.26338821195407 56.868 0.97726 60.169 59.759 60.736 3.3009 141 78 3 0 0 0 0.82752 1 13046 13046 59.795 0 1 714300 6405 3335 3939 3943 7986 7986 0.053546690402299646 ESTLHLVL 8 Unmodified _ESTLHLVL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 456.26324462890625 2 456.263468 910.512382 -0.24061 -0.00010978 0.32572 0.00014862 0.085114 3.8835E-05 456.26350685802765 56.965 0.91532 60.137 59.779 60.694 3.1721 174 76 3 0 0 0 0.82752 1 13157 13157 34.187 0 1 705610 6406 3335 3939 3943 7987 7987 0.053546690402299646 ESTRNLKKY 9 Unmodified _ESTRNLKKY_ 0 0 0 L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|104|2|sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|104|2|sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|104|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 569.3131713867188 2 569.814387 1137.61422 0.40116 0.00022859 0.51201 0.00029175 0.91318 0.00052034 569.8146927653536 64.176 0.16725 67.432 67.335 67.503 3.2556 18 12 2 0 0 0 0.12462 1 15260 15260 1.8442 0 1 55049 6407 14935 3940 3944 7988 7988 0.05091915391994917 ESVAKARI 8 Unmodified _ESVAKARI_ 0 0 0 REV__ENSG00000035862|ENST00000262768|TIMP2 REV__ENSG00000035862|ENST00000262768|TIMP2 MULTI-MSMS UPN47_class_I_Rep_2 3 437.26019287109375 2 437.261259 872.507966 -0.73168 -0.00031993 -0.41996 -0.00018363 -1.1516 -0.00050357 437.2610089235782 19.857 0.56303 23.253 22.999 23.562 3.3963 98 57 2 0 0 0 0.82752 1 1979 1979 3.9444 0 1 54657 + 6408 17636 3941 3945 7989 7989 0.06661204617319072 ESVAKARI 8 Unmodified _ESVAKARI_ 0 0 0 REV__ENSG00000035862|ENST00000262768|TIMP2 REV__ENSG00000035862|ENST00000262768|TIMP2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 437.261259 872.507966 -0.45194 -0.00019761 -0.72319 -0.00031622 -1.1751 -0.00051384 437.2609354176133 19.884 0.079309 23.496 23.436 23.515 3.6118 0.089101 -0.00050404 NaN 3.9444 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 16480 + 6409 17636 3941 3945 0.06661204617319072 ESVAKARI 8 Unmodified _ESVAKARI_ 0 0 0 REV__ENSG00000035862|ENST00000262768|TIMP2 REV__ENSG00000035862|ENST00000262768|TIMP2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 437.261259 872.507966 -0.73168 -0.00031993 -0.41996 -0.00018363 -1.1516 -0.00050357 437.2610089235782 19.857 0.56303 23.253 22.999 23.562 3.3963 -0.15359 -0.00023885 NaN 3.9444 98 57 2 NaN NaN NaN NaN 0 NaN NaN 0 54657 + 6410 17636 3941 3945 0.06661204617319072 ESVDIRQIY 9 Unmodified _ESVDIRQIY_ 0 0 0 ENSG00000187079|ENST00000527636|TEAD1 ENSG00000187079|ENST00000527636|TEAD1 ENSG00000187079|ENST00000527636|TEAD1 MULTI-MSMS UPN47_class_I_Rep_1 2 561.7926635742188 2 561.793121 1121.57169 0.10595 5.952E-05 -0.047033 -2.6423E-05 0.058914 3.3098E-05 561.7929788639779 45.054 0.82262 48.754 48.504 49.327 3.6999 118 47 3 0 0 0 0.24936 1 9554 9554 17.113 4.0704 1 344460 6411 5179 3942 3946 7990 7990 0.0157652026375672 ESVDIRQIY 9 Unmodified _ESVDIRQIY_ 0 0 0 ENSG00000187079|ENST00000527636|TEAD1 ENSG00000187079|ENST00000527636|TEAD1 ENSG00000187079|ENST00000527636|TEAD1 MULTI-MSMS UPN47_class_I_Rep_3 4 561.7932739257812 2 561.793121 1121.57169 0.25054 0.00014075 -0.17577 -9.8748E-05 0.074773 4.2007E-05 561.7929340683647 45.558 0.8134 48.802 48.48 49.293 3.2441 119 48 3 0 0 0 0.17897 2 9626 9626;9751 22.736 4.5899 1 325360 6412 5179 3942 3946 7991;7992 7991 0.0157652026375672 ESVLAVAGDEE 11 Unmodified _ESVLAVAGDEE_ 0 0 0 ENSG00000111845|ENST00000379568|PAK1IP1 ENSG00000111845|ENST00000379568|PAK1IP1 ENSG00000111845|ENST00000379568|PAK1IP1 MSMS UPN47_class_I_Rep_2 3 559.7640380859375 2 559.764226 1117.5139 NaN NaN NaN NaN NaN NaN NaN 43.103 1 46.461 45.961 46.961 3.358 0 0 0 0.38417 1 8857 8857 2.7352 0.89096 1 6413 1992 3943 3947 7993 7993 -0.040157864523280296 ESVNLKINQKK 11 Unmodified _ESVNLKINQKK_ 0 0 0 L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|20|3|sense L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|20|3|sense L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|20|3|sense MSMS UPN47_class_I_Rep_3 4 434.2572937011719 3 434.257626 1299.75105 NaN NaN NaN NaN NaN NaN NaN 105.33 1 108.86 108.36 109.36 3.5308 0 0 0 0.38417 1 25794 25794 1.1098 0 1 6414 13270 3944 3948 7994 7994 0.11316404551666892 ESVNLKINQKK 11 Unmodified _ESVNLKINQKK_ 0 0 0 L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|20|3|sense L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|20|3|sense L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|20|3|sense MSMS UPN48_class_I_Rep_3 7 434.2573547363281 3 434.257626 1299.75105 NaN NaN NaN NaN NaN NaN NaN 104.94 1 108.66 108.16 109.16 3.7192 0 0 0 0.38417 1 24774 24774 1.1098 0 1 6415 13270 3944 3948 7995 7995 0.11316404551666892 ESWLTTFP 8 Unmodified _ESWLTTFP_ 0 0 0 REV__MLT1I_dup977|chr2:47867155-47867541:-|1.088080797513132|0.0092265013899708|6.88|149.0|19|1|anti-sense REV__MLT1I_dup977|chr2:47867155-47867541:-|1.088080797513132|0.0092265013899708|6.88|149.0|19|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.73907470703125 2 490.739825 979.465098 -0.52991 -0.00026005 -0.54648 -0.00026818 -1.0764 -0.00052822 490.7395966850956 23.381 0.58373 26.731 26.487 27.07 3.3503 69 45 2 0 0 0 0.82752 1 2987 2987 13.508 0.46542 1 79062 + 6416 31769 3945 3949 7996 7996 -0.025456102307657602 ESYIRHITV 9 Unmodified _ESYIRHITV_ 0 0 0 REV__L1ME3B_dup5590|chr11:130079399-130080219:-|1.0945359281027496|0.0114745075379655|6.58|150.0|19|2|sense REV__L1ME3B_dup5590|chr11:130079399-130080219:-|1.0945359281027496|0.0114745075379655|6.58|150.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.3040771484375 2 559.303655 1116.59276 -0.0095322 -5.3314E-06 -0.68427 -0.00038272 -0.69381 -0.00038805 559.3041651024018 40.788 0.078049 44.46 44.431 44.509 3.6719 10 7 2 0 0 0 0.39745 1 8133 8133 8.1555 0 1 42411 + 6417 28066 3946 3950 7997 7997 0.03912530363254518 ESYIRHITV 9 Unmodified _ESYIRHITV_ 0 0 0 REV__L1ME3B_dup5590|chr11:130079399-130080219:-|1.0945359281027496|0.0114745075379655|6.58|150.0|19|2|sense REV__L1ME3B_dup5590|chr11:130079399-130080219:-|1.0945359281027496|0.0114745075379655|6.58|150.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 559.3035278320312 2 559.303655 1116.59276 NaN NaN NaN NaN NaN NaN NaN 41.773 1 45.01 44.51 45.51 3.2372 0 0 0 0.34878 1 8505 8505 8.1555 0 1 + 6418 28066 3946 3950 7998 7998 0.03912530363254518 ESYNMWHFV 9 Unmodified _ESYNMWHFV_ 0 0 0 L1MB7_dup8002|chr6:136768939-136769523:+|1.2542554693126706|0.0169595925818142|6.21|151.0|36|3|anti-sense L1MB7_dup8002|chr6:136768939-136769523:+|1.2542554693126706|0.0169595925818142|6.21|151.0|36|3|anti-sense L1MB7_dup8002|chr6:136768939-136769523:+|1.2542554693126706|0.0169595925818142|6.21|151.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 606.7604370117188 2 606.760766 1211.50698 0.46436 0.00028175 -0.40954 -0.00024849 0.054818 3.3262E-05 606.7604969773894 75.702 0.42443 78.959 78.727 79.151 3.2573 66 37 2 0 0 0 0.50015 1 18767 18767 0.6015 0.076735 1 178340 6419 10879 3947 3951 7999 7999 -0.09031377813903418 ETALPSKKQY 10 Unmodified _ETALPSKKQY_ 0 0 0 L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense MSMS UPN47_class_I_Rep_1 2 582.8142700195312 2 582.816596 1163.61864 NaN NaN NaN NaN NaN NaN NaN 64.789 1 68.145 67.645 68.645 3.3557 0 0 0 0.53105 1 15414 15414 4.897 0.70751 1 6420 11348 3948 3952 8000 8000 0.043373798149104914 ETALPSKKQY 10 Unmodified _ETALPSKKQY_ 0 0 0 L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.8161010742188 2 582.816596 1163.61864 NaN NaN NaN NaN NaN NaN NaN 65.111 1 68.291 67.791 68.791 3.1795 0 0 0 0.53105 1 15616 15616 5.2969 1.3525 1 6421 11348 3948 3952 8001 8001 0.043373798149104914 ETAQQHEQY 9 Unmodified _ETAQQHEQY_ 0 0 0 REV__nc|ENSG00000127914|Q99996-4|AKAP9 REV__nc|ENSG00000127914|Q99996-4|AKAP9 MSMS UPN48_class_I_Rep_2 6 567.2457885742188 2 567.246535 1132.47852 NaN NaN NaN NaN NaN NaN NaN 27.98 1 31.611 31.111 32.111 3.6311 0 0 0 0.38784 1 3789 3789 3.5965 0.70727 1 + 6422 18887 3949 3953 8002 8002 -0.08242404189468289 ETCFDVGTLE 10 Unmodified _ETCFDVGTLE_ 0 0 0 REV__HAL1_dup13212|chr9:137783003-137783457:-|1.3779021943674656|0.2845424994762724|2.28|151.0|8|2|sense REV__HAL1_dup13212|chr9:137783003-137783457:-|1.3779021943674656|0.2845424994762724|2.28|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 557.2402954101562 2 557.242072 1112.46959 NaN NaN NaN NaN NaN NaN NaN 57.232 1 60.774 60.274 61.274 3.5427 0 0 0 0.53105 1 12293 12293 6.2058 0 1 + 6423 23348 3950 3954 8003 8003 -0.08214513870143492 ETCVCAWCWM 10 Unmodified _ETCVCAWCWM_ 0 0 0 REV__THE1B-int_dup3348|chr12:62344036-62345644:-|4.983655727771014|0.0975855230290243|5.67|151.0|8|1|sense REV__THE1B-int_dup3348|chr12:62344036-62345644:-|4.983655727771014|0.0975855230290243|5.67|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 616.2236328125 2 616.22379 1230.43303 NaN NaN NaN NaN NaN NaN NaN 29.343 1 33.101 32.601 33.601 3.7578 0 0 0 0.53105 1 4647 4647 0.45834 0 1 + 6424 32264 3951 3955 8004 8004 -0.172971285637459 ETDKVMMSSI 10 Unmodified _ETDKVMMSSI_ 0 0 0 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 MSMS UPN47_class_I_Rep_3 4 570.770751953125 2 570.7674 1139.52025 NaN NaN NaN NaN NaN NaN NaN 51.693 1 54.898 54.398 55.398 3.2055 0 0 0 0.53105 1 11525 11525 20.415 2.2682 1 + 6425 19976 3952 3956 8005 8005 -0.043933078168038264 ETDLRNHFY 9 Unmodified _ETDLRNHFY_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_2 3 597.7813110351562 2 597.780544 1193.54654 0.045524 2.7213E-05 -0.080309 -4.8007E-05 -0.034785 -2.0794E-05 597.7805635771417 35.951 0.43647 39.363 39.149 39.586 3.4114 42 30 2 0 0 0 0.36392 1 6690 6690 10.074 1.3285 1 66820 6426 1283 3953 3957 8006 8006 -0.04249534538826083 ETDQLNLKF 9 Unmodified _ETDQLNLKF_ 0 0 0 L1M4_dup15073|chr12:120805252-120806197:+|1.5230712549086682|0.0287532814888885|5.73|151.0|35|3|sense L1M4_dup15073|chr12:120805252-120806197:+|1.5230712549086682|0.0287532814888885|5.73|151.0|35|3|sense L1M4_dup15073|chr12:120805252-120806197:+|1.5230712549086682|0.0287532814888885|5.73|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.2872924804688 2 554.287671 1106.56079 0.31486 0.00017452 -0.31102 -0.00017239 0.0038442 2.1308E-06 554.2874435721502 51.977 0.60123 55.57 55.271 55.872 3.5933 94 43 3 0 0 0 0.30034 1 11600 11600 13.906 0 1 184060 6427 8846 3954 3958 8007 8007 0.011771178894605328 ETDQLNLKF 9 Unmodified _ETDQLNLKF_ 0 0 0 L1M4_dup15073|chr12:120805252-120806197:+|1.5230712549086682|0.0287532814888885|5.73|151.0|35|3|sense L1M4_dup15073|chr12:120805252-120806197:+|1.5230712549086682|0.0287532814888885|5.73|151.0|35|3|sense L1M4_dup15073|chr12:120805252-120806197:+|1.5230712549086682|0.0287532814888885|5.73|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.287109375 2 554.287671 1106.56079 0.50957 0.00028245 -0.72768 -0.00040335 -0.21811 -0.00012089 554.2871289698192 52.547 0.54133 55.752 55.32 55.862 3.2055 86 47 2 0 0 0 0.11683 2 11783 11748;11783 30.637 0 1 224110 6428 8846 3954 3958 8008;8009 8009 0.011771178894605328 ETDVEICFTT 10 Unmodified _ETDVEICFTT_ 0 0 0 L1ME3E_dup623|chr2:85024585-85025342:-|1.2573883879721328|0.0265137873706573|5.57|151.0|16|2|sense L1ME3E_dup623|chr2:85024585-85025342:-|1.2573883879721328|0.0265137873706573|5.57|151.0|16|2|sense L1ME3E_dup623|chr2:85024585-85025342:-|1.2573883879721328|0.0265137873706573|5.57|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 579.2521362304688 2 579.255179 1156.49581 NaN NaN NaN NaN NaN NaN NaN 69.466 1 72.742 72.242 73.242 3.2761 0 0 0 0.53105 1 16870 16870 5.7319 1.4026 1 6429 12810 3955 3959 8010 8010 -0.07618244698710441 ETDYERERR 9 Unmodified _ETDYERERR_ 0 0 0 LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|33|2|anti-sense LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|33|2|anti-sense LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|33|2|anti-sense MSMS UPN46_class_I_Rep_3 1 627.31884765625 2 627.29709 1252.57963 NaN NaN NaN NaN NaN NaN NaN 72.012 1 72.012 71.512 72.512 0 0 0 0 0.39518 1 16621 16621 1.8442 0 1 6430 15651 3956 3960 8011 8011 -0.0365595248676982 ETEEQDKSTL 10 Unmodified _ETEEQDKSTL_ 0 0 0 REV__L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|1|1|sense REV__L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 590.2733154296875 2 590.272415 1178.53028 NaN NaN NaN NaN NaN NaN NaN 55.684 1 59.24 58.74 59.74 3.5559 0 0 0 0.53105 1 11891 11891 1.1933 0.50296 1 + 6431 29265 3957 3961 8012 8012 -0.051847052862285636 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_1 2 587.7721557617188 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 24.898 1 28.647 28.147 29.147 3.7495 0 0 0 0.39036 1 3331 3331 2.9952 0 1 6432 808 3958 3962 8013 8013 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_2 3 587.77197265625 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 24.926 1 28.409 27.909 28.909 3.483 0 0 0 0.3967 1 3384 3384 1.4819 0.15237 1 6433 808 3958 3962 8014 8014 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_2 3 587.7719116210938 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 25.052 1 28.535 28.035 29.035 3.483 0 0 0 0.34878 1 3422 3422 8.1555 2.4237 1 6434 808 3958 3962 8015 8015 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_2 3 587.77392578125 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 25.092 1 28.575 28.075 29.075 3.483 0 0 0 0.39036 1 3433 3433 2.9952 0.69251 1 6435 808 3958 3962 8016 8016 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_2 3 587.7722778320312 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 25.213 1 28.695 28.195 29.195 3.483 0 0 0 0.3967 1 3468 3468 1.4819 0.15237 1 6436 808 3958 3962 8017 8017 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_3 4 587.7743530273438 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 25.07 1 28.421 27.921 28.921 3.3509 0 0 0 0.3967 1 3465 3465 1.4819 0.15237 1 6437 808 3958 3962 8018 8018 -0.049606604955670264 ETEKDFSRY 9 Unmodified _ETEKDFSRY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_3 4 587.7723999023438 2 587.772385 1173.53022 NaN NaN NaN NaN NaN NaN NaN 25.311 1 28.662 28.162 29.162 3.3509 0 0 0 0.38916 1 3538 3538 3.2813 0.97858 1 6438 808 3958 3962 8019 8019 -0.049606604955670264 ETELDGLRY 9 Unmodified _ETELDGLRY_ 0 0 0 nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882.15,HAAO,chr2,-,I6.1,42767929,42769710|33|6.8|1|intron;ENSG00000162882|ENST00000294973|HAAO nc|ENSG00000162882|P46952-2|HAAO nc|ENSG00000162882|P46952-2|HAAO MULTI-MSMS UPN47_class_I_Rep_1 2 548.2694702148438 2 548.269478 1094.5244 0.22134 0.00012135 0.039693 2.1763E-05 0.26103 0.00014312 548.2693805398243 48.045 0.73671 51.727 51.391 52.128 3.6819 104 40 4 0 0 0 0.0060693 4 10302 10260;10302;10342;10386 99.755 52.007 1 577290 6439 3970 3959 3963 8020;8021;8022;8023 8021 -0.019077590072356543 ETELDGLRY 9 Unmodified _ETELDGLRY_ 0 0 0 nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882.15,HAAO,chr2,-,I6.1,42767929,42769710|33|6.8|1|intron;ENSG00000162882|ENST00000294973|HAAO nc|ENSG00000162882|P46952-2|HAAO nc|ENSG00000162882|P46952-2|HAAO MULTI-MSMS UPN47_class_I_Rep_2 3 548.2695922851562 2 548.269478 1094.5244 0.34016 0.0001865 -0.11071 -6.07E-05 0.22945 0.0001258 548.2693285816362 48.354 0.84498 51.703 51.357 52.202 3.3492 93 41 3 0 0 0 0.013401 5 10417 10370;10417;10455;10499;10546 99.755 52.007 1 576780 6440 3970 3959 3963 8024;8025;8026;8027;8028 8025 -0.019077590072356543 ETELDGLRY 9 Unmodified _ETELDGLRY_ 0 0 0 nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882.15,HAAO,chr2,-,I6.1,42767929,42769710|33|6.8|1|intron;ENSG00000162882|ENST00000294973|HAAO nc|ENSG00000162882|P46952-2|HAAO nc|ENSG00000162882|P46952-2|HAAO MULTI-MSMS UPN47_class_I_Rep_3 4 548.269287109375 2 548.269478 1094.5244 0.39424 0.00021615 -0.23403 -0.00012831 0.16022 8.7842E-05 548.2692935141586 48.48 0.84013 51.715 51.367 52.207 3.2345 95 43 3 0 0 0 0.0053074 5 10592 10459;10500;10546;10592;10636 118.07 55.496 1 500170 6441 3970 3959 3963 8029;8030;8031;8032;8033 8032 -0.019077590072356543 ETEREYFNRY 10 Unmodified _ETEREYFNRY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS UPN47_class_I_Rep_1 2 469.5491638183594 3 469.549357 1405.62624 -0.33072 -0.00015529 -0.1101 -5.1698E-05 -0.44082 -0.00020699 469.54927222624156 33.409 0.9009 37.107 36.791 37.692 3.6983 135 60 3 0 0 0 0.56072 5 5925 5832;5841;5884;5925;5965 3.3196 2.8137 1 188580 6442 2380 3960 3964 8034;8035;8036;8037;8038 8037 -0.06034512655469371 ETEREYFNRY 10 Unmodified _ETEREYFNRY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS UPN47_class_I_Rep_2 3 469.549072265625 3 469.549357 1405.62624 -0.34101 -0.00016012 -0.16732 -7.8564E-05 -0.50833 -0.00023869 469.5493056618428 33.698 0.7648 37.138 36.826 37.591 3.4398 110 47 3 0 0 0 0.56107 4 6002 5929;5955;6002;6042 3.0723 1.7426 1 142110 6443 2380 3960 3964 8039;8040;8041;8042 8041 -0.06034512655469371 ETEREYFNRY 10 Unmodified _ETEREYFNRY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS UPN47_class_I_Rep_3 4 469.54888916015625 3 469.549357 1405.62624 -0.59964 -0.00028156 0.022455 1.0544E-05 -0.57719 -0.00027102 469.54935491232754 33.947 0.69124 37.222 36.873 37.564 3.2748 111 45 3 0 0 0 0.56296 4 6136 6058;6070;6096;6136 1.7423 1.2878 1 156060 6444 2380 3960 3964 8043;8044;8045;8046 8046 -0.06034512655469371 ETEREYFNRY 10 Unmodified _ETEREYFNRY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS UPN47_class_I_Rep_3 4 469.54925537109375 3 469.549357 1405.62624 -0.59436 -0.00027908 -0.59544 -0.00027959 -1.1898 -0.00055867 469.54911438493235 34.314 0.41636 37.589 37.43 37.846 3.2748 39 27 2 0 0 0 0.56296 1 6206 6206 1.7423 1.1154 1 104140 6445 2380 3960 3964 8047 8047 -0.06034512655469371 ETEREYFNRY 10 Unmodified _ETEREYFNRY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MATCH UPN47_class_I_Rep_2 3 3 469.549357 1405.62624 -0.34245 -0.0001608 -0.6419 -0.00030141 -0.98435 -0.0004622 469.5492237398747 34.153 0.14566 37.593 37.532 37.677 3.4398 0.0022667 -5.4725E-05 NaN 1.7423 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 73270 6446 2380 3960 3964 -0.06034512655469371 ETERIVTTY 9 Unmodified _ETERIVTTY_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS UPN47_class_I_Rep_1 2 556.285400390625 2 556.285128 1110.5557 -0.022775 -1.2669E-05 -0.12695 -7.062E-05 -0.14972 -8.3289E-05 556.2850540207653 35.963 0.42555 39.639 39.445 39.87 3.6762 51 28 2 0 0 0 0.047711 1 6646 6646 49.933 13.806 1 87609 6447 1193 3961 3965 8048 8048 0.0048481402686775255 ETERIVTTY 9 Unmodified _ETERIVTTY_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS UPN47_class_I_Rep_3 4 556.2847290039062 2 556.285128 1110.5557 -0.091004 -5.0624E-05 -0.19249 -0.00010708 -0.28349 -0.0001577 556.2851181676209 36.387 0.6321 39.642 39.342 39.974 3.2547 65 41 2 0 0 0 0.10568 1 6853 6853 32.786 3.7041 1 86842 6448 1193 3961 3965 8049 8049 0.0048481402686775255 ETERIVTTY 9 Unmodified _ETERIVTTY_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 556.285128 1110.5557 0.045484 2.5302E-05 -0.34201 -0.00019025 -0.29652 -0.00016495 556.2850179295679 36.262 0.44036 39.673 39.444 39.884 3.4114 0.021846 -0.00013961 NaN 49.933 51 32 2 NaN NaN NaN NaN 0 NaN NaN 0 124660 6449 1193 3961 3965 0.0048481402686775255 ETERIVTTY 9 Unmodified _ETERIVTTY_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 556.285128 1110.5557 -0.091004 -5.0624E-05 -0.19249 -0.00010708 -0.28349 -0.0001577 556.2851181676209 36.387 0.6321 39.642 39.342 39.974 3.2547 -0.0098648 2.6743E-05 NaN 49.933 65 41 2 NaN NaN NaN NaN 0 NaN NaN 0 86842 6450 1193 3961 3965 0.0048481402686775255 ETESTWLTY 9 Unmodified _ETESTWLTY_ 0 0 0 nc|ENSG00000164929|Q8WXS3-6|BAALC;nc|ENSG00000164929|Q8WXS3-5|BAALC;nc|ENSG00000164929|Q8WXS3-4|BAALC;ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC MSMS UPN47_class_I_Rep_1 2 565.2568969726562 2 565.256037 1128.49752 NaN NaN NaN NaN NaN NaN NaN 64.247 1 67.603 67.103 68.103 3.3557 0 0 0 0.2408 1 15255 15255 13.906 5.1606 1 6451 4142 3962 3966 8050 8050 -0.06158867618410113 ETESTWLTY 9 Unmodified _ETESTWLTY_ 0 0 0 nc|ENSG00000164929|Q8WXS3-6|BAALC;nc|ENSG00000164929|Q8WXS3-5|BAALC;nc|ENSG00000164929|Q8WXS3-4|BAALC;ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC MULTI-MSMS UPN47_class_I_Rep_2 3 565.2562866210938 2 565.256037 1128.49752 0.39206 0.00022162 -0.24917 -0.00014085 0.14289 8.077E-05 565.2561451981975 64.5 0.68835 67.756 67.49 68.178 3.2556 73 53 2 0 0 0 0.056917 3 15420 15361;15365;15420 46.021 46.021 1 120810 6452 4142 3962 3966 8051;8052;8053 8053 -0.06158867618410113 ETESTWLTY 9 Unmodified _ETESTWLTY_ 0 0 0 nc|ENSG00000164929|Q8WXS3-6|BAALC;nc|ENSG00000164929|Q8WXS3-5|BAALC;nc|ENSG00000164929|Q8WXS3-4|BAALC;ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC MSMS UPN47_class_I_Rep_3 4 565.2850341796875 2 565.256037 1128.49752 NaN NaN NaN NaN NaN NaN NaN 64.467 1 67.641 67.141 68.141 3.1741 0 0 0 0.22485 1 15419 15419 14.838 5.4551 1 6453 4142 3962 3966 8054 8054 -0.06158867618410113 ETESTWLTY 9 Unmodified _ETESTWLTY_ 0 0 0 nc|ENSG00000164929|Q8WXS3-6|BAALC;nc|ENSG00000164929|Q8WXS3-5|BAALC;nc|ENSG00000164929|Q8WXS3-4|BAALC;ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC MSMS UPN47_class_I_Rep_3 4 565.2562255859375 2 565.256037 1128.49752 NaN NaN NaN NaN NaN NaN NaN 64.512 1 67.687 67.187 68.187 3.1741 0 0 0 0.10315 1 15433 15433 24.021 10.978 1 6454 4142 3962 3966 8055 8055 -0.06158867618410113 ETESTWLTY 9 Unmodified _ETESTWLTY_ 0 0 0 nc|ENSG00000164929|Q8WXS3-6|BAALC;nc|ENSG00000164929|Q8WXS3-5|BAALC;nc|ENSG00000164929|Q8WXS3-4|BAALC;ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC nc|ENSG00000164929|Q8WXS3-6|BAALC MSMS UPN47_class_I_Rep_3 4 565.2564697265625 2 565.256037 1128.49752 NaN NaN NaN NaN NaN NaN NaN 64.703 1 67.882 67.382 68.382 3.1795 0 0 0 0.046744 1 15492 15492 37.974 19.828 1 6455 4142 3962 3966 8056 8056 -0.06158867618410113 ETEYSFLDY 9 Unmodified _ETEYSFLDY_ 0 0 0 ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF ENSG00000214078|ENST00000397443|CPNE1 ENSG00000214078|ENST00000397443|CPNE1 MULTI-MSMS UPN47_class_I_Rep_1 2 583.7481079101562 2 583.748044 1165.48154 0.3635 0.00021219 0.073724 4.3036E-05 0.43722 0.00025523 583.7480166796696 71.915 0.29157 75.29 75.082 75.374 3.3751 45 23 2 0 0 0 0.012845 2 17568 17527;17568 68.081 33.978 1 204290 6456 5610 3963 3967 8057;8058 8058 -0.09458573855317809 ETEYSFLDY 9 Unmodified _ETEYSFLDY_ 0 0 0 ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF ENSG00000214078|ENST00000397443|CPNE1 ENSG00000214078|ENST00000397443|CPNE1 MULTI-MSMS UPN47_class_I_Rep_1 2 583.7483520507812 2 583.748044 1165.48154 0.36516 0.00021316 0.25804 0.00015063 0.62321 0.0003638 583.7482658305837 72.073 0.43422 75.453 75.379 75.813 3.3799 64 31 3 0 0 0 0.006343 3 17608 17598;17608;17655 74.929 40.827 1 169360 6457 5610 3963 3967 8059;8060;8061 8060 -0.09458573855317809 ETEYSFLDY 9 Unmodified _ETEYSFLDY_ 0 0 0 ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF ENSG00000214078|ENST00000397443|CPNE1 ENSG00000214078|ENST00000397443|CPNE1 MULTI-MSMS UPN47_class_I_Rep_2 3 583.7484130859375 2 583.748044 1165.48154 0.42788 0.00024977 0.31678 0.00018492 0.74466 0.00043469 583.7481019886403 72.216 0.73003 75.506 75.178 75.908 3.2899 115 67 3 0 0 0 0.006343 5 17711 17634;17653;17670;17711;17756 85.272 48.045 1 172830 6458 5610 3963 3967 8062;8063;8064;8065;8066 8065 -0.09458573855317809 ETEYSFLDY 9 Unmodified _ETEYSFLDY_ 0 0 0 ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF ENSG00000214078|ENST00000397443|CPNE1 ENSG00000214078|ENST00000397443|CPNE1 MULTI-MSMS UPN47_class_I_Rep_3 4 583.7495727539062 2 583.748044 1165.48154 0.45296 0.00026441 0.076009 4.437E-05 0.52897 0.00030878 583.7480341630846 72.215 0.77161 75.434 75.1 75.872 3.2188 133 66 3 0 0 0 0.006343 7 17746 17700;17708;17746;17752;17793;17837;17878 85.272 48.045 1 219200 6459 5610 3963 3967 8067;8068;8069;8070;8071;8072;8073 8069 -0.09458573855317809 ETFEIFYLK 9 Unmodified _ETFEIFYLK_ 0 0 0 ENST00000398117.1_1_18:60986227-60986365:-|nuORF ENST00000398117.1_1_18:60986227-60986365:-|nuORF ENST00000398117.1_1_18:60986227-60986365:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 595.8138427734375 2 595.310615 1188.60668 0.47629 0.00028354 -0.12405 -7.3845E-05 0.35224 0.00020969 595.3102082890292 71.342 0.168 74.892 74.769 74.937 3.5505 20 16 2 0 0 0 0.46869 1 16631 16631 3.9444 0.66309 1 97072 6460 6583 3964 3968 8074 8074 0.019917630717145585 ETFLLLIQHE 10 Unmodified _ETFLLLIQHE_ 0 0 0 HAL1_dup15594|chr11:58548006-58548646:+|1.5062729994288715|0.1015697477011702|3.89|151.0|43|3|anti-sense HAL1_dup15594|chr11:58548006-58548646:+|1.5062729994288715|0.1015697477011702|3.89|151.0|43|3|anti-sense HAL1_dup15594|chr11:58548006-58548646:+|1.5062729994288715|0.1015697477011702|3.89|151.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 621.8385009765625 2 621.840071 1241.66559 NaN NaN NaN NaN NaN NaN NaN 33.057 1 33.057 32.557 33.557 0 0 0 0 0.53105 1 5736 5736 1.4819 0.28856 1 6461 7815 3965 3969 8075 8075 0.05442239366038848 ETFNRSVFD 9 Unmodified _ETFNRSVFD_ 0 0 0 REV__L1PB1_dup11204|chr14:102174718-102176104:-|1.3991587365458722|0.0328590519553631|5.41|151.0|93|3|anti-sense REV__L1PB1_dup11204|chr14:102174718-102176104:-|1.3991587365458722|0.0328590519553631|5.41|151.0|93|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.7619018554688 2 557.76182 1113.50909 0.064846 3.6169E-05 -0.046278 -2.5812E-05 0.018568 1.0356E-05 557.7617703860883 41.86 0.72985 45.225 44.923 45.653 3.3655 71 54 2 0 0 0 0.37599 1 8556 8556 9.3831 0.63772 1 119780 + 6462 30315 3966 3970 8076 8076 -0.04312625804413983 ETFSRIVIKL 10 Unmodified _ETFSRIVIKL_ 0 0 0 REV__MER58A_dup9264|chr12:68630220-68630481:-|2.539948711547517|0.034776761063019|6.19|151.0|7|2|sense REV__MER58A_dup9264|chr12:68630220-68630481:-|2.539948711547517|0.034776761063019|6.19|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 603.3675537109375 2 603.366256 1204.71796 NaN NaN NaN NaN NaN NaN NaN 73.145 1 76.627 76.127 77.127 3.4812 0 0 0 0.53105 1 17217 17217 1.6526 0.96225 1 + 6463 31464 3967 3971 8077 8077 0.12378822499658781 ETFSYPDFLR 10 Unmodified _ETFSYPDFLR_ 0 0 0 nc|ENSG00000204472|P55008-2|AIF1;nc|ENSG00000204472|P55008-3|AIF1;ENSG00000204472|ENST00000376059|AIF1 nc|ENSG00000204472|P55008-2|AIF1 nc|ENSG00000204472|P55008-2|AIF1 MULTI-MSMS UPN48_class_I_Rep_1 5 637.8065185546875 2 637.806228 1273.5979 0.50086 0.00031945 -0.2602 -0.00016596 0.24066 0.0001535 637.8059579876026 67.563 0.58896 71.014 70.717 71.306 3.4516 104 43 3 0 0 0 0.44952 2 15543 15502;15543 15.739 9.0155 1 333050 6464 5525 3968 3972 8078;8079 8079 -0.02795210564795525 ETFSYPDFLR 10 Unmodified _ETFSYPDFLR_ 0 0 0 nc|ENSG00000204472|P55008-2|AIF1;nc|ENSG00000204472|P55008-3|AIF1;ENSG00000204472|ENST00000376059|AIF1 nc|ENSG00000204472|P55008-2|AIF1 nc|ENSG00000204472|P55008-2|AIF1 MULTI-MSMS UPN48_class_I_Rep_2 6 637.806396484375 2 637.806228 1273.5979 0.51263 0.00032696 -0.27672 -0.00017649 0.23591 0.00015046 637.8059216608634 67.361 0.66283 70.857 70.523 71.186 3.4964 127 53 3 0 0 0 0.51963 3 15446 15404;15446;15484 9.544 2.8208 1 405290 6465 5525 3968 3972 8080;8081;8082 8081 -0.02795210564795525 ETFSYPDFLR 10 Unmodified _ETFSYPDFLR_ 0 0 0 nc|ENSG00000204472|P55008-2|AIF1;nc|ENSG00000204472|P55008-3|AIF1;ENSG00000204472|ENST00000376059|AIF1 nc|ENSG00000204472|P55008-2|AIF1 nc|ENSG00000204472|P55008-2|AIF1 MULTI-MSMS UPN48_class_I_Rep_3 7 638.3092041015625 2 637.806228 1273.5979 0.67923 0.00043322 -0.27418 -0.00017487 0.40505 0.00025834 637.8059807153318 67.323 0.66318 70.831 70.471 71.134 3.5077 112 55 3 0 0 0 0.51963 1 15347 15347 9.544 2.8208 1 245680 6466 5525 3968 3972 8083 8083 -0.02795210564795525 ETFVAILRE 9 Unmodified _ETFVAILRE_ 0 0 0 REV__ERVL-E-int_dup4574|chr8:58574212-58574492:-|1.1075596014254407|0.2028149929128526|2.45|151.0|23|3|anti-sense REV__ERVL-E-int_dup4574|chr8:58574212-58574492:-|1.1075596014254407|0.2028149929128526|2.45|151.0|23|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 538.8142700195312 2 539.300581 1076.58661 0.4408 0.00023773 -0.40316 -0.00021742 0.037642 2.03E-05 539.3008613596609 55.423 0.15167 58.978 58.931 59.083 3.5554 10 9 2 0 0 0 0.12321 1 11738 11738 3.9444 0 1 40142 + 6467 23287 3969 3973 8084 8084 0.05138012131760661 ETFVAILRE 9 Unmodified _ETFVAILRE_ 0 0 0 REV__ERVL-E-int_dup4574|chr8:58574212-58574492:-|1.1075596014254407|0.2028149929128526|2.45|151.0|23|3|anti-sense REV__ERVL-E-int_dup4574|chr8:58574212-58574492:-|1.1075596014254407|0.2028149929128526|2.45|151.0|23|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 539.300581 1076.58661 0.28024 0.00015113 1.6751 0.0009034 1.9554 0.0010545 539.8033283941065 59.16 0.032032 59.16 59.146 59.178 0 0.090903 0.0012242 NaN 3.9444 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 98419 + 6468 23287 3969 3973 0.05138012131760661 ETFYSTERY 9 Unmodified _ETFYSTERY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MSMS UPN47_class_I_Rep_1 2 598.26611328125 2 598.266936 1194.51932 -0.014738 -8.817E-06 -0.21661 -0.00012959 -0.23135 -0.00013841 598.2665821018718 39.147 0.48838 42.812 42.545 43.033 3.6652 41 30 3 0 0 0 0.45441 2 7590 7580;7590 4.897 3.0528 1 80205 6469 4659 3970 3974 8085;8086 8086 -0.07016062869843154 ETFYSTERY 9 Unmodified _ETFYSTERY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MSMS UPN47_class_I_Rep_2 3 598.2666015625 2 598.266936 1194.51932 0.045076 2.6967E-05 -0.42969 -0.00025707 -0.38461 -0.0002301 598.2664588323945 39.478 0.36735 42.856 42.629 42.996 3.3785 25 20 2 0 0 0 0.49187 1 7722 7722 1.4819 0 1 67186 6470 4659 3970 3974 8087 8087 -0.07016062869843154 ETFYSTERY 9 Unmodified _ETFYSTERY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS UPN47_class_I_Rep_3 4 598.2662963867188 2 598.266936 1194.51932 NaN NaN NaN NaN NaN NaN NaN 39.524 1 42.762 42.262 43.262 3.238 0 0 0 0.37891 1 7818 7818 5.7319 1.4026 1 6471 4659 3970 3974 8088 8088 -0.07016062869843154 ETFYSTERY 9 Unmodified _ETFYSTERY_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS UPN47_class_I_Rep_3 4 598.2657470703125 2 598.266936 1194.51932 NaN NaN NaN NaN NaN NaN NaN 39.607 1 42.845 42.345 43.345 3.238 0 0 0 0.3824 1 7844 7844 4.897 0.56777 1 6472 4659 3970 3974 8089 8089 -0.07016062869843154 ETHLAAPIKI 10 Unmodified _ETHLAAPIKI_ 0 0 0 REV__HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|118|2|anti-sense REV__HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|118|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.8263549804688 2 546.824224 1091.63389 NaN NaN NaN NaN NaN NaN NaN 13.847 1 17.234 16.734 17.734 3.3871 0 0 0 0.53105 1 427 427 1.4819 0 1 + 6473 23976 3971 3975 8090 8090 0.09174291402746348 ETHTLQEHNLA 11 Unmodified _ETHTLQEHNLA_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198838|ENST00000634891|RYR3 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MSMS UPN47_class_I_Rep_1 2 647.3165283203125 2 646.815116 1291.61568 0.48645 0.00031464 -0.68896 -0.00044563 -0.20251 -0.00013099 646.8148075973767 77.892 0.36253 81.321 81.155 81.518 3.4289 60 35 3 0 0 0 0.63951 1 19382 19382 4.1895 0.31317 1 223840 6474 5444;5471 3972 3976 8091 8091 -0.01846495309882812 ETHTLQEHNLA 11 Unmodified _ETHTLQEHNLA_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198838|ENST00000634891|RYR3 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MSMS UPN47_class_I_Rep_2 3 646.814697265625 2 646.815116 1291.61568 0.48277 0.00031226 -0.65594 -0.00042427 -0.17317 -0.00011201 646.8147131069807 78.095 0.40456 81.437 81.237 81.642 3.3428 67 43 2 0 0 0 0.63951 1 19367 19367 4.1895 0.31317 1 125350 6475 5444;5471 3972 3976 8092 8092 -0.01846495309882812 ETIGEILKK 9 Unmodified _ETIGEILKK_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MULTI-MSMS UPN48_class_I_Rep_1 5 515.8106079101562 2 515.810782 1029.60701 0.28534 0.00014718 -0.30487 -0.00015725 -0.01953 -1.0074E-05 515.8105369955167 37.796 0.78252 41.301 40.951 41.733 3.5052 141 77 3 0 0 0 0.24411 5 6436 6429;6436;6470;6506;6544 17.443 2.206 1 231510 6476 4157 3973 3977 8093;8094;8095;8096;8097 8094 0.09339182791586609 ETIGEILKK 9 Unmodified _ETIGEILKK_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MULTI-MSMS UPN48_class_I_Rep_2 6 515.8107299804688 2 515.810782 1029.60701 0.30853 0.00015914 -0.37952 -0.00019576 -0.070993 -3.6619E-05 515.8104788357242 37.412 0.84097 41.114 40.81 41.651 3.7021 147 88 2 0 0 0 0.20144 4 6461 6357;6393;6427;6461 20.581 6.1756 1 260830 6477 4157 3973 3977 8098;8099;8100;8101 8101 0.09339182791586609 ETIGEILKK 9 Unmodified _ETIGEILKK_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MULTI-MSMS UPN48_class_I_Rep_3 7 515.8107299804688 2 515.810782 1029.60701 0.25106 0.0001295 -0.31029 -0.00016005 -0.059226 -3.0549E-05 515.8105266614398 37.467 0.76862 41.13 40.839 41.608 3.663 161 79 3 0 0 0 0.10956 6 6363 6260;6273;6295;6328;6363;6399 32.037 8.2477 1 223100 6478 4157 3973 3977 8102;8103;8104;8105;8106;8107 8106 0.09339182791586609 ETILASSGTDR 11 Unmodified _ETILASSGTDR_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MSMS UPN48_class_I_Rep_3 7 575.2913208007812 2 575.290942 1148.56733 NaN NaN NaN NaN NaN NaN NaN 29.559 1 33.288 32.788 33.788 3.7286 0 0 0 0.38417 1 4159 4159 3.5871 0.30575 1 6479 1601;3938 3974 3978 8108 8108 -0.0010098894981638296 ETLIKWDSL 9 Unmodified _ETLIKWDSL_ 0 0 0 nc|ENSG00000290676|Q6UXR4|SERPINA13P nc|ENSG00000290676|Q6UXR4|SERPINA13P nc|ENSG00000290676|Q6UXR4|SERPINA13P MSMS UPN47_class_I_Rep_1 2 552.8007202148438 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 13.836 1 17.292 16.792 17.792 3.457 0 0 0 0.39598 1 426 426 1.6526 0 1 6480 16856 3975 3979 8109 8109 0.03862592411906007 ETLISSWNFA 10 Unmodified _ETLISSWNFA_ 0 0 0 REV__nc|ENSG00000197124|O95780-2|ZNF682 REV__nc|ENSG00000197124|O95780-2|ZNF682 MULTI-MSMS UPN48_class_I_Rep_2 6 584.2881469726562 2 584.287671 1166.56079 0.56818 0.00033198 -0.021575 -1.2606E-05 0.5466 0.00031937 584.2876344143053 58.788 1.2756 62.287 61.864 63.139 3.4987 265 81 4 0 0 0 0.56078 1 12721 12721 3.2813 0 1 5828300 + 6481 21069 3976 3980 8110 8110 -0.015828821105287716 ETLLISTNSY 10 Unmodified _ETLLISTNSY_ 0 0 0 REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2 REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2 MSMS UPN47_class_I_Rep_1 2 570.7921752929688 2 570.792786 1139.57102 NaN NaN NaN NaN NaN NaN NaN 72.743 1 76.123 75.623 76.623 3.3799 0 0 0 0.53105 1 17819 17819 3.5965 0.70727 1 + 6482 17537 3977 3981 8111 8111 0.0068168082405009045 ETLQITQKY 9 Unmodified _ETLQITQKY_ 0 0 0 L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|26|1|sense L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|26|1|sense L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|26|1|sense MSMS UPN47_class_I_Rep_2 3 562.323974609375 2 562.303321 1122.59209 NaN NaN NaN NaN NaN NaN NaN 64.575 1 67.831 67.331 68.331 3.2556 0 0 0 0.078496 1 15393 15393 29.082 0 1 6483 9810 3978 3982 8112 8112 0.035696909235639396 ETLVSVTTIS 10 Unmodified _ETLVSVTTIS_ 0 0 0 REV__PABL_A_dup262|chrX:16726001-16726611:-|1.4126643314383491|0.0120584578382328|6.87|151.0|10|2|sense REV__PABL_A_dup262|chrX:16726001-16726611:-|1.4126643314383491|0.0120584578382328|6.87|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 525.3052978515625 2 525.289879 1048.56521 NaN NaN NaN NaN NaN NaN NaN 58.023 1 61.46 60.96 61.96 3.437 0 0 0 0.53105 1 13366 13366 12.241 3.4953 1 + 6484 32147 3979 3983 8113 8113 0.04286582312374776 ETMKELKAY 9 Unmodified _ETMKELKAY_ 0 0 0 ENSG00000130203|ENST00000252486|APOE ENSG00000130203|ENST00000252486|APOE ENSG00000130203|ENST00000252486|APOE MSMS UPN47_class_I_Rep_3 4 556.7843627929688 2 556.78645 1111.55835 NaN NaN NaN NaN NaN NaN NaN 60.483 1 63.648 63.148 64.148 3.1651 0 0 0 0.29868 1 14206 14206 10.824 0 1 6485 2644 3980 3984 8114 8114 0.007029461601632647 ETNDPNLDDL 10 Unmodified _ETNDPNLDDL_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MSMS UPN47_class_I_Rep_1 2 573.2529907226562 2 573.251482 1144.48841 NaN NaN NaN NaN NaN NaN NaN 78.97 1 82.416 81.916 82.916 3.4456 0 0 0 0.53105 1 19654 19654 7.609 0.88579 1 6486 942 3981 3985 8115 8115 -0.07805260974760131 ETNDQILKF 9 Unmodified _ETNDQILKF_ 0 0 0 REV__L1MA1_dup1791|chr7:102908107-102910375:-|1.3699576506948523|0.2260760867508799|2.6|151.0|49|2|sense REV__L1MA1_dup1791|chr7:102908107-102910375:-|1.3699576506948523|0.2260760867508799|2.6|151.0|49|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 554.2876586914062 2 554.287671 1106.56079 0.31486 0.00017452 -0.31102 -0.00017239 0.0038442 2.1308E-06 554.2874435721502 51.977 0.60123 55.57 55.271 55.872 3.5933 94 43 3 0 0 0 0.057133 1 11557 11557 34.402 0 1 184060 + 6487 24764 3982 3986 8116 8116 0.011771178894832701 ETNDQILKF 9 Unmodified _ETNDQILKF_ 0 0 0 REV__L1MA1_dup1791|chr7:102908107-102910375:-|1.3699576506948523|0.2260760867508799|2.6|151.0|49|2|sense REV__L1MA1_dup1791|chr7:102908107-102910375:-|1.3699576506948523|0.2260760867508799|2.6|151.0|49|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.2877197265625 2 554.287671 1106.56079 0.51429 0.00028507 -0.58023 -0.00032162 -0.065939 -3.6549E-05 554.7889859259692 52.331 0.55794 55.664 55.238 55.796 3.3332 86 40 3 0 0 0 0.16559 1 11682 11682 24.021 0 1 161390 + 6488 24764 3982 3986 8117 8117 0.011771178894832701 ETNPYWHLN 9 Unmodified _ETNPYWHLN_ 0 0 0 MLT1B_dup12403|chr11:66108082-66108438:-|1.1354075963702852|0.0072002885066348|7.3|151.0|11|3|sense MLT1B_dup12403|chr11:66108082-66108438:-|1.1354075963702852|0.0072002885066348|7.3|151.0|11|3|sense MLT1B_dup12403|chr11:66108082-66108438:-|1.1354075963702852|0.0072002885066348|7.3|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 587.2694091796875 2 587.269813 1172.52507 NaN NaN NaN NaN NaN NaN NaN 61.98 1 65.146 64.646 65.646 3.1667 0 0 0 0.39428 1 14661 14661 2.0598 0 1 6489 16271 3983 3987 8118 8118 -0.05428919567521007 ETNSRFPHRY 10 Unmodified _ETNSRFPHRY_ 0 0 0 L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|14|1|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|14|1|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 436.2140808105469 3 436.214421 1305.62143 -0.74748 -0.00032606 -0.2237 -9.758E-05 -0.97117 -0.00042364 436.2142968693269 17.268 1.3689 20.655 20.069 21.438 3.387 237 154 2 0 0 0 0.56072 1 1352 1352 3.3196 0.24738 1 102440 6490 9793 3984 3988 8119 8119 -0.019153520075633423 ETNYGIPQR 9 Unmodified _ETNYGIPQR_ 0 0 0 ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1 ENST00000513060.5_1_5:180669121-180670896:-|nuORF ENST00000513060.5_1_5:180669121-180670896:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 539.2698974609375 2 539.269813 1076.52507 0.4279 0.00023075 -0.15414 -8.3123E-05 0.27376 0.00014763 539.2696511886525 32.264 0.50335 35.791 35.607 36.11 3.5266 90 53 2 0 0 0 0.30034 3 4909 4850;4909;4921 13.906 5.3128 1 104850 6491 5533 3985 3989 8120;8121;8122 8121 -0.010129195675290248 ETNYGIPQR 9 Unmodified _ETNYGIPQR_ 0 0 0 ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1 ENST00000513060.5_1_5:180669121-180670896:-|nuORF ENST00000513060.5_1_5:180669121-180670896:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 539.2698364257812 2 539.269813 1076.52507 0.4672 0.00025194 -0.30601 -0.00016502 0.16119 8.6923E-05 539.2696680578593 32.227 0.573 35.877 35.612 36.185 3.6497 106 63 2 0 0 0 0.23293 3 4963 4913;4963;5003 18.146 5.9057 1 132020 6492 5533 3985 3989 8123;8124;8125 8124 -0.010129195675290248 ETNYGIPQR 9 Unmodified _ETNYGIPQR_ 0 0 0 ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1 ENST00000513060.5_1_5:180669121-180670896:-|nuORF ENST00000513060.5_1_5:180669121-180670896:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 539.2698974609375 2 539.269813 1076.52507 0.45979 0.00024795 -0.4115 -0.00022191 0.048291 2.6042E-05 539.2695155290082 32.106 0.56294 35.808 35.543 36.106 3.7015 104 59 2 0 0 0 0.36392 3 4839 4803;4839;4899 10.074 4.3135 1 133970 6493 5533 3985 3989 8126;8127;8128 8127 -0.010129195675290248 ETPPLQIVPV 10 Unmodified _ETPPLQIVPV_ 0 0 0 REV__THE1B_dup18716|chr14:65087827-65088189:+|1.4359987578998852|0.0595859203966395|4.59|151.0|23|3|anti-sense REV__THE1B_dup18716|chr14:65087827-65088189:+|1.4359987578998852|0.0595859203966395|4.59|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.8004760742188 2 546.818607 1091.62266 0.35358 0.00019334 -0.09727 -5.3189E-05 0.25631 0.00014015 546.8184325427327 65.171 0.36798 68.427 68.282 68.65 3.2556 34 28 2 0 0 0 0.47413 1 15546 15546 13.906 2.2658 1 74801 + 6494 32230 3986 3990 8129 8129 0.08051469308611559 ETQKAVTV 8 Unmodified _ETQKAVTV_ 0 0 0 L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|126|3|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|126|3|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|126|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 438.24505615234375 2 438.245275 874.475997 -0.59537 -0.00026092 0.40688 0.00017831 -0.18849 -8.2606E-05 438.2454044927668 44.206 0.50349 47.561 47.332 47.836 3.3556 41 31 2 0 0 0 0.82752 1 9170 9170 17.113 1.8644 1 66956 6495 15370 3987 3991 8130 8130 0.033737921435204044 ETQLSLLAYY 10 Unmodified _ETQLSLLAYY_ 0 0 0 L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|25|1|sense L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|25|1|sense L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|25|1|sense MSMS UPN47_class_I_Rep_2 3 600.8118896484375 2 600.810979 1199.6074 NaN NaN NaN NaN NaN NaN NaN 75.278 1 78.591 78.091 79.091 3.3127 0 0 0 0.53105 1 18579 18579 1.6526 0.17072 1 6496 9302 3988 3992 8131 8131 0.015585577207730239 ETQRCCQY 8 Unmodified _ETQRCCQY_ 0 0 0 REV__ENSG00000135605.13,TEC,chr4,-,I9.1,48155867,48156679|34|8.29|5|intron REV__ENSG00000135605.13,TEC,chr4,-,I9.1,48155867,48156679|34|8.29|5|intron MSMS UPN47_class_I_Rep_2 3 515.7086181640625 2 515.707676 1029.4008 NaN NaN NaN NaN NaN NaN NaN 21.99 1 25.414 24.914 25.914 3.4241 0 0 0 0.39996 1 2540 2540 7.9102 1.187 1 + 6497 19147 3989 3993 8132 8132 -0.11272456650863205 ETRDWGGAQF 10 Unmodified _ETRDWGGAQF_ 0 0 0 nc|ENSG00000185453|Q86XI8|ZSWIM9;ENSG00000185453|ENST00000614654|ZSWIM9 nc|ENSG00000185453|Q86XI8|ZSWIM9 nc|ENSG00000185453|Q86XI8|ZSWIM9 MULTI-MSMS UPN47_class_I_Rep_2 3 583.764892578125 2 583.764894 1165.51524 0.22168 0.00012941 -0.25812 -0.00015068 -0.03644 -2.1273E-05 583.7648269121735 45.242 0.49973 48.596 48.45 48.95 3.3534 44 28 2 0 0 0 0.53004 1 9567 9567 8.1555 0.24537 1 119970 6498 5104 3990 3994 8133 8133 -0.06090107572890702 ETRDWGGAQF 10 Unmodified _ETRDWGGAQF_ 0 0 0 nc|ENSG00000185453|Q86XI8|ZSWIM9;ENSG00000185453|ENST00000614654|ZSWIM9 nc|ENSG00000185453|Q86XI8|ZSWIM9 nc|ENSG00000185453|Q86XI8|ZSWIM9 MULTI-MATCH UPN48_class_I_Rep_1 5 2 583.764894 1165.51524 0.40921 0.00023888 0.037589 2.1943E-05 0.4468 0.00026083 583.7648100330446 45.32 0.77663 48.836 48.45 49.227 3.5162 0.16606 -4.3561E-05 NaN 8.1555 74 57 2 NaN NaN NaN NaN 0 NaN NaN 0 156010 6499 5104 3990 3994 -0.06090107572890702 ETRDWGGAQF 10 Unmodified _ETRDWGGAQF_ 0 0 0 nc|ENSG00000185453|Q86XI8|ZSWIM9;ENSG00000185453|ENST00000614654|ZSWIM9 nc|ENSG00000185453|Q86XI8|ZSWIM9 nc|ENSG00000185453|Q86XI8|ZSWIM9 MULTI-MATCH UPN48_class_I_Rep_2 6 2 583.764894 1165.51524 0.39762 0.00023212 0.086118 5.0273E-05 0.48374 0.00028239 583.7647586394178 44.955 0.59174 48.716 48.424 49.015 3.7617 0.046498 1.3098E-05 NaN 8.1555 74 44 2 NaN NaN NaN NaN 0 NaN NaN 0 193360 6500 5104 3990 3994 -0.06090107572890702 ETREPQGTL 9 Unmodified _ETREPQGTL_ 0 0 0 L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|21|2|sense L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|21|2|sense L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.7618408203125 2 515.76182 1029.50909 -0.40882 -0.00021085 1.0777 0.00055584 0.66889 0.00034499 515.7622448417668 25.931 0.41077 29.279 29.069 29.48 3.3478 58 37 2 0 0 0 0.47197 1 3759 3759 3.5965 0.31518 1 65664 6501 8978 3991 3995 8134 8134 -0.004486258044153146 ETRSTKLPTL 10 Unmodified _ETRSTKLPTL_ 0 0 0 REV__L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|2|1|sense REV__L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 573.3388061523438 2 573.32987 1144.64519 NaN NaN NaN NaN NaN NaN NaN 41.73 1 45.376 44.876 45.876 3.6458 0 0 0 0.53105 1 7571 7571 2.7352 0.89096 1 + 6502 28920 3992 3996 8135 8135 0.0786506870622361 ETSDEAWLR 9 Unmodified _ETSDEAWLR_ 0 0 0 REV__nc|ENSG00000058272|O14974-5|PPP1R12A REV__nc|ENSG00000058272|O14974-5|PPP1R12A MSMS UPN47_class_I_Rep_2 3 553.7590942382812 2 553.759278 1105.504 NaN NaN NaN NaN NaN NaN NaN 63.435 1 66.691 66.191 67.191 3.2558 0 0 0 0.38639 1 15049 15049 3.9444 2.1002 1 + 6503 17711 3993 3997 8136 8136 -0.04452929667058925 ETSGNRQGP 9 Unmodified _ETSGNRQGP_ 0 0 0 REV__L1MB3_dup15033|chr17:67136291-67136974:+|1.097505397668734|0.063982371680887|4.1|151.0|20|3|sense REV__L1MB3_dup15033|chr17:67136291-67136974:+|1.097505397668734|0.063982371680887|4.1|151.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 472.7712707519531 2 473.222862 944.431172 NaN NaN NaN NaN NaN NaN NaN 22.251 1 22.251 21.751 22.751 0 0 0 0 0.39518 1 2613 2613 1.8442 1.0506 1 + 6504 25831 3994 3998 8137 8137 -0.04326638669806471 ETSKQYTEY 9 Unmodified _ETSKQYTEY_ 0 0 0 REV__L1MCc_dup2277|chr10:67969157-67970309:+|1.982871794806716|0.1662498146978487|3.58|150.0|37|3|sense REV__L1MCc_dup2277|chr10:67969157-67970309:+|1.982871794806716|0.1662498146978487|3.58|150.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 574.7559814453125 2 574.758943 1147.50333 NaN NaN NaN NaN NaN NaN NaN 32.534 1 35.989 35.489 36.489 3.4547 0 0 0 0.39428 1 5648 5648 2.0598 0.21551 1 + 6505 27240 3995 3999 8138 8138 -0.06451769106774918 ETSLANIKL 9 Unmodified _ETSLANIKL_ 0 0 0 AluSx_dup49434|chr8:37883192-37883469:-|3.2677544822084617|0.0474249546854621|6.11|151.0|12|3|sense AluSx_dup49434|chr8:37883192-37883469:-|3.2677544822084617|0.0474249546854621|6.11|151.0|12|3|sense AluSx_dup49434|chr8:37883192-37883469:-|3.2677544822084617|0.0474249546854621|6.11|151.0|12|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 495.243408203125 2 494.787307 987.560061 -0.12999 -6.4317E-05 0.012965 6.415E-06 -0.11702 -5.7902E-05 494.78739389808106 18.382 0.79962 21.772 21.287 22.087 3.3898 156 89 2 0 0 0 0.11021 1 1459 1459 14.838 3.198 1 81735 6506 290 3996 4000 8139 8139 0.06578323240421469 ETSQNQPVIV 10 Unmodified _ETSQNQPVIV_ 0 0 0 REV__ENSG00000075429|ENST00000533854|CACNG5 REV__ENSG00000075429|ENST00000533854|CACNG5 MSMS UPN47_class_I_Rep_1 2 557.7886962890625 2 557.790578 1113.5666 NaN NaN NaN NaN NaN NaN NaN 41.443 1 45.115 44.615 45.615 3.6719 0 0 0 0.53105 1 8323 8323 5.2969 0 1 + 6507 17855 3997 4001 8140 8140 0.014362164011345158 ETTDITTDDK 10 Unmodified _ETTDITTDDK_ 0 0 0 REV__L1MA8_dup2826|chr5:21536725-21539370:+|2.170288050096159|0.134286683642456|4.01|151.0|3|1|sense REV__L1MA8_dup2826|chr5:21536725-21539370:+|2.170288050096159|0.134286683642456|4.01|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 569.7590942382812 2 569.75914 1137.50373 NaN NaN NaN NaN NaN NaN NaN 16.898 1 20.447 19.947 20.947 3.5486 0 0 0 0.53105 1 887 887 0 0 1 + 6508 25546 3998 4002 8141 8141 -0.05952394177597853 ETTKNNVVQP 10 Unmodified _ETTKNNVVQP_ 0 0 0 nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2 nc|ENSG00000025156|Q03933-2|HSF2 nc|ENSG00000025156|Q03933-2|HSF2 MSMS UPN47_class_I_Rep_1 2 565.29443359375 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 25.621 1 29.371 28.871 29.871 3.7495 0 0 0 0.53105 1 3542 3542 1.4819 0.28856 1 6509 822 3999 4003 8142 8142 0.01835618775430703 ETTLSTWCSL 10 Unmodified _ETTLSTWCSL_ 0 0 0 L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|91|3|anti-sense L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|91|3|anti-sense L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|91|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.7650756835938 2 570.765714 1139.51688 0.52524 0.00029979 -0.76886 -0.00043884 -0.24361 -0.00013905 570.765040634106 52.002 0.67614 55.208 54.895 55.571 3.2055 103 39 4 0 0 0 0.35076 1 11546 11546 24.021 1.2843 1 358410 6510 10214 4000 4004 8143 8143 -0.04730234599196592 ETVGFHGSR 9 Unmodified _ETVGFHGSR_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS UPN47_class_I_Rep_1 2 495.2434387207031 2 495.243598 988.472643 -0.33495 -0.00016588 0.018811 9.3161E-06 -0.31614 -0.00015656 495.24354555107794 17.169 1.6713 20.692 20.25 21.921 3.5224 462 199 3 0 0 0 0.37599 2 1424 1424;1451 9.3831 9.3831 1 318720 6511 5045 4001 4005 8144;8145 8144 -0.022054579104633376 ETVGFHGSR 9 Unmodified _ETVGFHGSR_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS UPN47_class_I_Rep_1 2 495.2431640625 2 495.243598 988.472643 -0.33023 -0.00016354 0.24312 0.0001204 -0.087107 -4.3139E-05 495.2437144239933 18.696 0.75126 22.277 21.979 22.731 3.5806 118 91 2 0 0 0 0.43153 2 1554 1554;1645 6.2058 6.2058 1 46591 6512 5045 4001 4005 8146;8147 8146 -0.022054579104633376 ETVGFHGSR 9 Unmodified _ETVGFHGSR_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS UPN47_class_I_Rep_2 3 495.24359130859375 2 495.243598 988.472643 -0.13471 -6.6715E-05 -0.08519 -4.219E-05 -0.2199 -0.0001089 495.2434876249135 17.8 1.8883 21.187 20.505 22.393 3.387 373 214 3 0 0 0 0.37599 5 1426 1426;1489;1520;1579;1647 9.3831 9.3831 1 197780 6513 5045 4001 4005 8148;8149;8150;8151;8152 8148 -0.022054579104633376 ETVGQLGTVLR 11 Unmodified _ETVGQLGTVLR_ 0 0 0 nc|ENSG00000005381|P05164-3|MPO;ENSG00000005381|ENST00000225275|MPO;nc|ENSG00000005381|P05164-2|MPO nc|ENSG00000005381|P05164-3|MPO nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS UPN48_class_I_Rep_1 5 587.3373413085938 2 586.83532 1171.65609 0.40732 0.00023903 -0.047963 -2.8146E-05 0.35936 0.00021089 586.8351957447494 49.616 0.6572 53.141 52.842 53.499 3.5246 62 39 2 0 0 0 0.27667 3 10058 10058;10080;10084 17.863 8.8869 1 186050 6514 698 4002 4006 8153;8154;8155 8153 0.07712471080526484 ETVGQLGTVLR 11 Unmodified _ETVGQLGTVLR_ 0 0 0 nc|ENSG00000005381|P05164-3|MPO;ENSG00000005381|ENST00000225275|MPO;nc|ENSG00000005381|P05164-2|MPO nc|ENSG00000005381|P05164-3|MPO nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS UPN48_class_I_Rep_2 6 586.8350830078125 2 586.83532 1171.65609 0.42319 0.00024834 0.062398 3.6617E-05 0.48559 0.00028496 586.8351971223491 49.39 0.51844 53.108 52.885 53.404 3.7175 49 34 2 0 0 0 0.28538 2 9990 9969;9990 35.08 13.543 1 234990 6515 698 4002 4006 8156;8157 8157 0.07712471080526484 ETVGQLGTVLR 11 Unmodified _ETVGQLGTVLR_ 0 0 0 nc|ENSG00000005381|P05164-3|MPO;ENSG00000005381|ENST00000225275|MPO;nc|ENSG00000005381|P05164-2|MPO nc|ENSG00000005381|P05164-3|MPO nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS UPN48_class_I_Rep_3 7 586.8355102539062 2 586.83532 1171.65609 0.40305 0.00023652 0.035364 2.0753E-05 0.43841 0.00025728 586.8353012433622 49.581 0.5624 53.21 52.907 53.469 3.6291 66 36 2 0 0 0 0.29365 2 9993 9946;9993 22.775 10.083 1 199960 6516 698 4002 4006 8158;8159 8159 0.07712471080526484 ETVLNLLVGG 10 Unmodified _ETVLNLLVGG_ 0 0 0 nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA nc|ENSG00000172915|Q8NFP9|NBEA nc|ENSG00000172915|Q8NFP9|NBEA MULTI-MSMS UPN48_class_I_Rep_1 5 507.7940673828125 2 507.795132 1013.57571 0.21762 0.00011051 -1.2821 -0.00065105 -1.0645 -0.00054054 507.7943048797689 107.81 0.16542 111.44 111.38 111.54 3.6313 21 11 3 0 0 0 0.51565 1 26006 26006 10.074 1.4806 1 9249300 6517 4596 4003 4007 8160 8160 0.0694660975749457 ETVPNHQIY 9 Unmodified _ETVPNHQIY_ 0 0 0 REV__ENSG00000165995.22,CACNB2,chr10,+,I22.1,18536197,18538179|36|4.55|1|intron REV__ENSG00000165995.22,CACNB2,chr10,+,I22.1,18536197,18538179|36|4.55|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 550.7706298828125 2 550.772188 1099.52982 0.3833 0.00021111 -0.64356 -0.00035445 -0.26025 -0.00014334 550.7719776634939 56.588 0.91109 59.76 59.308 60.219 3.1721 134 66 3 0 0 0 0.41259 1 13105 13105 7.2892 1.0834 1 475210 + 6518 20148 4004 4008 8161 8161 -0.015960354247454234 ETVTLYYT 8 Unmodified _ETVTLYYT_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS UPN47_class_I_Rep_2 3 495.24383544921875 2 495.244941 988.475328 NaN NaN NaN NaN NaN NaN NaN 19.073 1 22.462 21.962 22.962 3.3898 0 0 0 0.39996 1 1728 1728 7.9102 2.1497 1 6519 3502;16708 4005 4009 8162 8162 -0.019370472961895757 ETVTLYYT 8 Unmodified _ETVTLYYT_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS UPN47_class_I_Rep_2 3 495.24322509765625 2 495.244941 988.475328 NaN NaN NaN NaN NaN NaN NaN 19.181 1 22.577 22.077 23.077 3.3963 0 0 0 0.4044 1 1760 1760 4.756 1.4747 1 6520 3502;16708 4005 4009 8163 8163 -0.019370472961895757 ETVTLYYT 8 Unmodified _ETVTLYYT_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS UPN47_class_I_Rep_2 3 495.24273681640625 2 495.244941 988.475328 NaN NaN NaN NaN NaN NaN NaN 19.221 1 22.617 22.117 23.117 3.3963 0 0 0 0.4044 1 1771 1771 4.756 1.4747 1 6521 3502;16708 4005 4009 8164 8164 -0.019370472961895757 ETVTLYYT 8 Unmodified _ETVTLYYT_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS UPN47_class_I_Rep_2 3 495.2440185546875 2 495.244941 988.475328 NaN NaN NaN NaN NaN NaN NaN 19.884 1 23.28 22.78 23.78 3.3963 0 0 0 0.388 1 1962 1962 12.532 2.3482 1 6522 3502;16708 4005 4009 8165 8165 -0.019370472961895757 ETVVYSFLYF 10 Unmodified _ETVVYSFLYF_ 0 0 0 L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|96|2|anti-sense L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|96|2|anti-sense L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|96|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3168334960938 2 634.315897 1266.61724 0.046138 2.9266E-05 2.0612 0.0013074 2.1073 0.0013367 634.3171437785178 29.799 0.16208 33.291 33.254 33.416 3.4923 19 12 2 0 0 0 0.56333 1 4829 4829 1.4819 0.28856 1 39715 6523 12394 4006 4010 8166 8166 -0.005402542738465854 ETWCCARF 8 Unmodified _ETWCCARF_ 0 0 0 L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|66|2|sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|66|2|sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|66|2|sense MSMS UPN48_class_I_Rep_2 6 508.2113952636719 2 508.209855 1014.40516 NaN NaN NaN NaN NaN NaN NaN 53.878 1 57.46 56.96 57.96 3.5817 0 0 0 0.40404 1 11334 11334 5.2307 2.3415 1 6524 9461 4007 4011 8167 8167 -0.10146947437294784 ETWHMNFRMF 10 Unmodified _ETWHMNFRMF_ 0 0 0 ENSG00000197213|ENST00000586855|ZSCAN5B ENSG00000197213|ENST00000586855|ZSCAN5B ENSG00000197213|ENST00000586855|ZSCAN5B MSMS UPN46_class_I_Rep_3 1 466.9409484863281 3 466.874242 1397.6009 NaN NaN NaN NaN NaN NaN NaN 53.191 1 53.191 52.691 53.691 0 0 0 0 0.53105 1 11428 11428 0.77653 0 1 6525 5355 4008 4012 8168 8168 -0.08199981983284488 ETWPLVPPL 9 Unmodified _ETWPLVPPL_ 0 0 0 REV__nc|ENSG00000082146|Q9C0K7-3|STRADB REV__nc|ENSG00000082146|Q9C0K7-3|STRADB MSMS UPN46_class_I_Rep_3 1 526.2936401367188 2 526.294768 1050.57498 NaN NaN NaN NaN NaN NaN NaN 77.171 1 77.171 76.671 77.671 0 0 0 0 0.40038 1 18029 18029 0.6015 0.076735 1 + 6526 17917 4009 4013 8169 8169 0.05171815108406008 ETWRISIKI 9 Unmodified _ETWRISIKI_ 0 0 0 THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|1|1|sense THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|1|1|sense THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 573.3382568359375 2 573.337498 1144.66044 NaN NaN NaN NaN NaN NaN NaN 41.23 1 44.876 44.376 45.376 3.6458 0 0 0 0.37692 1 7424 7424 6.2058 0.47393 1 6527 32955 4010 4014 8170 8170 0.09389980294099587 ETYEDFTHD 9 Unmodified _ETYEDFTHD_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MSMS UPN48_class_I_Rep_1 5 578.7259521484375 2 578.725101 1155.43565 0.42228 0.00024438 0.69657 0.00040312 1.1188 0.00064751 578.7253632573594 41.835 0.57153 45.343 45.099 45.671 3.5079 74 57 2 0 0 0 0.46434 2 7644 7644;7707 4.3292 0.38484 1 162080 + 6528 20536 4011 4015 8171;8172 8171 -0.1358521903757719 ETYEDFTHD 9 Unmodified _ETYEDFTHD_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MSMS UPN48_class_I_Rep_2 6 578.7257080078125 2 578.725101 1155.43565 0.41785 0.00024182 0.67689 0.00039173 1.0947 0.00063355 578.7254467455903 41.425 0.73285 45.176 44.966 45.699 3.7509 125 82 2 0 0 0 0.46434 1 7557 7557 4.3292 0.38484 1 168030 + 6529 20536 4011 4015 8173 8173 -0.1358521903757719 ETYEDFTHD 9 Unmodified _ETYEDFTHD_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MSMS UPN48_class_I_Rep_3 7 578.725830078125 2 578.725101 1155.43565 0.39815 0.00023042 0.79471 0.00045992 1.1929 0.00069034 578.7255099426208 41.609 0.67342 45.255 45.027 45.7 3.6458 111 69 2 0 0 0 0.46434 1 7528 7528 4.3292 0.38484 1 121970 + 6530 20536 4011 4015 8174 8174 -0.1358521903757719 ETYEDFTHD 9 Unmodified _ETYEDFTHD_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 578.725101 1155.43565 0.42228 0.00024438 0.69657 0.00040312 1.1188 0.00064751 578.7253632573594 41.835 0.57153 45.343 45.099 45.671 3.5079 0.085236 -1.6725E-05 NaN 4.3292 74 57 2 NaN NaN NaN NaN 0 NaN NaN 0 162080 + 6531 20536 4011 4015 -0.1358521903757719 ETYEDFTHD 9 Unmodified _ETYEDFTHD_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 578.725101 1155.43565 0.41785 0.00024182 0.67689 0.00039173 1.0947 0.00063355 578.7254467455903 41.425 0.73285 45.176 44.966 45.699 3.7509 -0.082086 -3.9508E-05 NaN 4.3292 125 82 2 NaN NaN NaN NaN 0 NaN NaN 0 168030 + 6532 20536 4011 4015 -0.1358521903757719 ETYEDFTHD 9 Unmodified _ETYEDFTHD_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 578.725101 1155.43565 0.39815 0.00023042 0.79471 0.00045992 1.1929 0.00069034 578.7255099426208 41.609 0.67342 45.255 45.027 45.7 3.6458 -0.0031493 9.6869E-05 NaN 4.3292 111 69 2 NaN NaN NaN NaN 0 NaN NaN 0 121970 + 6533 20536 4011 4015 -0.1358521903757719 ETYGVRQVPW 10 Unmodified _ETYGVRQVPW_ 0 0 0 MER83B-int_dup80|chr5:131663043-131663972:+|1.527930251030568|0.0222425441343655|6.1|151.0|9|1|sense MER83B-int_dup80|chr5:131663043-131663972:+|1.527930251030568|0.0222425441343655|6.1|151.0|9|1|sense MER83B-int_dup80|chr5:131663043-131663972:+|1.527930251030568|0.0222425441343655|6.1|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 617.81298828125 2 617.814387 1233.61422 NaN NaN NaN NaN NaN NaN NaN 37.641 1 41.304 40.804 41.804 3.663 0 0 0 0.53105 1 6369 6369 1.4819 0.15237 1 6534 16221 4012 4016 8175 8175 0.006759153920029348 ETYNILEPY 9 Unmodified _ETYNILEPY_ 0 0 0 REV__ENST00000488991.1_1_20:10018913-10023797:+|nuORF REV__ENST00000488991.1_1_20:10018913-10023797:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 570.7705688476562 2 571.274229 1140.53391 0.20659 0.00011802 -0.036252 -2.071E-05 0.17034 9.7311E-05 571.2741510374449 49.589 1.3702 53.248 52.848 54.218 3.6592 183 80 4 0 0 0 0.35081 1 11034 11034 10.824 3.5347 1 634210 + 6535 19028 4013 4017 8176 8176 -0.030739907217139262 ETYNILEPY 9 Unmodified _ETYNILEPY_ 0 0 0 REV__ENST00000488991.1_1_20:10018913-10023797:+|nuORF REV__ENST00000488991.1_1_20:10018913-10023797:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 570.7731323242188 2 571.274229 1140.53391 0.48272 0.00027577 -0.23052 -0.00013169 0.2522 0.00014408 571.2740209888746 49.993 1.4903 53.22 52.765 54.256 3.2262 144 69 3 0 0 0 0.42249 1 11261 11261 6.7232 2.3939 1 650010 + 6536 19028 4013 4017 8177 8177 -0.030739907217139262 ETYRFKYL 8 Unmodified _ETYRFKYL_ 0 0 0 REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|1|1|sense REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.2954711914062 2 560.295299 1118.57605 0.35143 0.0001969 0.16667 9.3386E-05 0.5181 0.00029029 560.2949654682027 66.743 1.0697 70.101 69.596 70.666 3.3584 174 79 3 0 0 0 0.82752 1 16027 16027 7.2892 1.0834 1 364070 + 6537 24378 4014 4018 8178 8178 0.02150029477343196 EVAALIRSL 9 Unmodified _EVAALIRSL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_1 5 486.7638854980469 2 486.297842 970.581131 0.29131 0.00014166 -0.33296 -0.00016192 -0.041652 -2.0255E-05 486.297679486672 59.788 0.43538 63.268 63.065 63.501 3.4801 51 33 2 0 0 0 0.38714 1 13136 13136 8.7454 1.4562 1 103960 6538 4671 4015 4019 8179 8179 0.09466333339935318 EVAALIRSL 9 Unmodified _EVAALIRSL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_3 7 486.2978820800781 2 486.297842 970.581131 0.20599 0.00010017 -0.24709 -0.00012016 -0.041102 -1.9988E-05 486.29764718772304 59.677 0.4408 63.194 62.881 63.322 3.5169 47 34 2 0 0 0 0.40701 1 13051 13051 7.609 0.88579 1 96251 6539 4671 4015 4019 8180 8180 0.09466333339935318 EVAGGWHISAA 11 Unmodified _EVAGGWHISAA_ 0 0 0 MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|77|2|anti-sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|77|2|anti-sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|77|2|anti-sense MSMS UPN48_class_I_Rep_1 5 549.2730712890625 2 549.272355 1096.53016 NaN NaN NaN NaN NaN NaN NaN 25.092 1 28.659 28.159 29.159 3.5667 0 0 0 0.38417 1 2869 2869 2.9952 0.69251 1 6540 16089 4016 4020 8181 8181 -0.01424615704900134 EVARGNVIYN 10 Unmodified _EVARGNVIYN_ 0 0 0 ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2 ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF MSMS UPN48_class_I_Rep_2 6 567.7847290039062 2 567.798737 1133.58292 NaN NaN NaN NaN NaN NaN NaN 53.129 1 56.739 56.239 57.239 3.6098 0 0 0 0.53105 1 11105 11105 8.7454 0.83525 1 6541 5264 4017 4021 8182 8182 0.021473423578981965 EVASQWDK 8 Unmodified _EVASQWDK_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MSMS UPN47_class_I_Rep_3 4 481.7322998046875 2 481.732532 961.45051 NaN NaN NaN NaN NaN NaN NaN 49.788 1 53.014 52.514 53.514 3.2262 0 0 0 0.40157 1 10943 10943 7.2892 0 1 + 6542 18593 4018 4022 8183 8183 -0.031756823789010014 EVATVLPGTL 10 Unmodified _EVATVLPGTL_ 0 0 0 REV__ENST00000531746.1_1_11:64813497-64813611:-|nuORF REV__ENST00000531746.1_1_11:64813497-64813611:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.2891540527344 2 500.289682 998.564812 NaN NaN NaN NaN NaN NaN NaN 81.482 1 84.969 84.469 85.469 3.4874 0 0 0 0.53105 1 20333 20333 13.906 2.7916 1 + 6543 22859 4019 4023 8184 8184 0.06547207383187015 EVCAFACKRKY 11 Unmodified _EVCAFACKRKY_ 0 0 0 ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142 ENST00000433921.5_1_2:219503064-219516433:-|nuORF ENST00000433921.5_1_2:219503064-219516433:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 439.88604736328125 3 439.886259 1316.63695 -0.42389 -0.00018646 -0.14236 -6.2623E-05 -0.56625 -0.00024908 439.8861778204022 25.508 1.5525 29.257 28.896 30.448 3.7495 403 142 4 0 0 0 0.4411 1 3558 3558 9.2438 0.95734 1 1442000 6544 2132 4020 4024 8185 8185 -0.008705248063961335 EVCLPVWVGF 10 Unmodified _EVCLPVWVGF_ 0 0 0 L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|199|3|anti-sense L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|199|3|anti-sense L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|199|3|anti-sense MSMS UPN47_class_I_Rep_1 2 574.7968139648438 2 574.794078 1147.5736 NaN NaN NaN NaN NaN NaN NaN 74.325 1 77.719 77.219 78.219 3.3937 0 0 0 0.53105 1 18291 18291 6.7232 0.51738 1 6545 10059 4021 4025 8186 8186 0.005718577480365639 EVCPFLAYL 9 Unmodified _EVCPFLAYL_ 0 0 0 ENST00000246553.3_1_19:35843468-35843927:+|nuORF ENST00000246553.3_1_19:35843468-35843927:+|nuORF ENST00000246553.3_1_19:35843468-35843927:+|nuORF MSMS UPN48_class_I_Rep_2 6 527.7769775390625 2 527.767529 1053.5205 NaN NaN NaN NaN NaN NaN NaN 76.598 1 80.21 79.71 80.71 3.6116 0 0 0 0.1724 1 18089 18089 18.135 0 1 6546 5912 4022 4026 8187 8187 -0.004115200346632264 EVCWYCVSL 9 Unmodified _EVCWYCVSL_ 0 0 0 REV__L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|173|1|anti-sense REV__L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|173|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 551.2406616210938 2 551.240821 1100.46709 0.45607 0.00025141 -1.3653 -0.00075261 -0.90923 -0.00050121 551.2403844720737 76.724 0.46587 79.993 79.749 80.215 3.269 87 48 3 0 0 0 0.36392 1 19083 19083 10.074 0 1 165570 + 6547 30019 4023 4027 8188 8188 -0.07912640808831384 EVCWYCVSL 9 Unmodified _EVCWYCVSL_ 0 0 0 REV__L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|173|1|anti-sense REV__L1PA7_dup12670|chr20:25708497-25713650:-|2.000516653430916|0.3072792088153631|2.7|151.0|173|1|anti-sense MSMS UPN47_class_I_Rep_3 4 551.2412109375 2 551.240821 1100.46709 NaN NaN NaN NaN NaN NaN NaN 76.839 1 80.108 79.608 80.608 3.269 0 0 0 0.31276 1 19118 19118 10.074 0 1 + 6548 30019 4023 4027 8189 8189 -0.07912640808831384 EVCYFGYA 8 Unmodified _EVCYFGYA_ 0 0 0 REV__L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|116|2|anti-sense REV__L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_2 6 476.1987609863281 2 476.199479 950.384405 NaN NaN NaN NaN NaN NaN NaN 29.372 1 33.004 32.504 33.504 3.6316 0 0 0 0.40738 1 4163 4163 0.79363 0 1 + 6549 24900 4024 4028 8190 8190 -0.09277214545318202 EVDHGVPLDKP 11 Unmodified _EVDHGVPLDKP_ 0 0 0 REV__Tigger3b_dup2154|chr5:79660710-79661467:+|2.139454628137908|0.1392454422281508|3.94|151.0|3|1|sense REV__Tigger3b_dup2154|chr5:79660710-79661467:+|2.139454628137908|0.1392454422281508|3.94|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 603.3140869140625 2 603.311677 1204.6088 NaN NaN NaN NaN NaN NaN NaN 27.583 1 27.583 27.083 28.083 0 0 0 0 0.38417 1 4113 4113 1.1933 0.59184 1 + 6550 32734 4025 4029 8191 8191 0.014681918094993307 EVDPDTILK 9 Unmodified _EVDPDTILK_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_1 2 515.2776489257812 2 515.276772 1028.53899 0.0024287 1.2514E-06 -0.245 -0.00012624 -0.24257 -0.00012499 515.2767151805757 45.794 0.7227 49.493 49.258 49.981 3.6999 71 41 2 0 0 0 0.37599 3 9687 9635;9665;9687 9.3831 2.66 1 131910 6551 1484 4026 4030 8192;8193;8194 8194 0.02586313140909624 EVDPDTILK 9 Unmodified _EVDPDTILK_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_2 3 515.27734375 2 515.276772 1028.53899 -0.090093 -4.6423E-05 -0.40972 -0.00021112 -0.49981 -0.00025754 515.2766237034193 46.136 0.60898 49.489 49.22 49.829 3.3534 65 39 2 0 0 0 0.43982 3 9770 9770;9790;9812 5.7319 2.1354 1 93196 6552 1484 4026 4030 8195;8196;8197 8195 0.02586313140909624 EVDPDTILK 9 Unmodified _EVDPDTILK_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN47_class_I_Rep_3 4 515.2759399414062 2 515.276772 1028.53899 0.12283 6.3291E-05 -0.43489 -0.00022409 -0.31206 -0.0001608 515.2765911078985 46.169 0.69579 49.413 49.196 49.891 3.2441 67 43 2 0 0 0 0.44742 1 9855 9855 5.2969 2.0156 1 99340 6553 1484 4026 4030 8198 8198 0.02586313140909624 EVDVGVVHFT 10 Unmodified _EVDVGVVHFT_ 0 0 0 ENSG00000029639|ENST00000367166|TFB1M ENSG00000029639|ENST00000367166|TFB1M ENSG00000029639|ENST00000367166|TFB1M MULTI-MSMS UPN48_class_I_Rep_2 6 551.28271484375 2 551.282389 1100.55022 0.54525 0.00030059 0.18305 0.00010091 0.7283 0.0004015 551.7840074383404 62.004 0.30833 65.478 65.258 65.566 3.4738 32 23 2 0 0 0 0.52562 1 13797 13797 8.7454 2.0222 1 177300 6554 833 4027 4031 8199 8199 0.003971352350617963 EVEAVWPALA 10 Unmodified _EVEAVWPALA_ 0 0 0 nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS nc|ENSG00000111602|Q9UNS1-2|TIMELESS nc|ENSG00000111602|Q9UNS1-2|TIMELESS MSMS UPN46_class_I_Rep_3 1 542.789306640625 2 542.787307 1083.56006 NaN NaN NaN NaN NaN NaN NaN 100.89 1 100.89 100.39 101.39 0 0 0 0 0.53105 1 24605 24605 6.7232 2.3939 1 6555 1975 4028 4032 8200 8200 0.02162323240418118 EVEEQNLRL 9 Unmodified _EVEEQNLRL_ 0 0 0 REV__L1PA2_dup4444|chr15:92136973-92140869:-|1.1762635312578065|0.0731728251851758|4.01|151.0|51|2|sense REV__L1PA2_dup4444|chr15:92136973-92140869:-|1.1762635312578065|0.0731728251851758|4.01|151.0|51|2|sense MSMS UPN47_class_I_Rep_3 4 565.2957153320312 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 37.992 1 41.234 40.734 41.734 3.2414 0 0 0 0.39518 1 7346 7346 1.8442 0 1 + 6556 29499 4029 4033 8201 8201 0.01835618775430703 EVEIVVVKN 9 Unmodified _EVEIVVVKN_ 0 0 0 REV__L1MA7_dup7459|chr16:23849710-23850369:-|2.3975165815784103|0.0096095160778213|7.96|151.0|24|3|sense REV__L1MA7_dup7459|chr16:23849710-23850369:-|2.3975165815784103|0.0096095160778213|7.96|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.7921752929688 2 514.802957 1027.59136 0.27386 0.00014098 0.037589 1.9351E-05 0.31145 0.00016033 514.8028816394362 67.36 0.29099 70.551 70.373 70.664 3.1914 26 21 2 0 0 0 0.43153 1 16298 16298 6.2058 0 1 66655 + 6557 25525 4030 4034 8202 8202 0.0786689627452688 EVEKELSLL 9 Unmodified _EVEKELSLL_ 0 0 0 REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 530.300537109375 2 530.300247 1058.58594 0.36727 0.00019476 -0.5075 -0.00026913 -0.14023 -7.4366E-05 530.2999326697853 54.868 0.67226 58.376 58.047 58.719 3.5082 73 44 2 0 0 0 0.066364 3 11646 11602;11646;11693 41.956 0 1 289800 + 6558 17899 4031 4035 8203;8204;8205 8204 0.05899172692056709 EVEKELSLL 9 Unmodified _EVEKELSLL_ 0 0 0 REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 530.3001098632812 2 530.300247 1058.58594 0.53327 0.00028279 -0.30492 -0.0001617 0.22835 0.00012109 530.2999741369321 54.79 0.66757 58.372 58.067 58.734 3.5817 79 40 3 0 0 0 0.10568 2 11560 11560;11650 32.786 0 1 240930 + 6559 17899 4031 4035 8206;8207 8206 0.05899172692056709 EVEKELSLL 9 Unmodified _EVEKELSLL_ 0 0 0 REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 530.2996215820312 2 530.300247 1058.58594 0.361 0.00019144 -0.30854 -0.00016362 0.052466 2.7823E-05 530.29984838893 54.761 0.63166 58.331 58.053 58.685 3.5694 80 42 3 0 0 0 0.066364 2 11520 11520;11560 41.956 0 1 302740 + 6560 17899 4031 4035 8208;8209 8208 0.05899172692056709 EVEKELSLL 9 Unmodified _EVEKELSLL_ 0 0 0 REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF REV__ENST00000591701.5_1_19:10887861-10906203:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 530.300247 1058.58594 0.53327 0.00028279 -0.30492 -0.0001617 0.22835 0.00012109 530.2999741369321 54.79 0.66757 58.372 58.067 58.734 3.5817 0.011969 6.8462E-05 NaN 41.956 79 40 3 NaN NaN NaN NaN 0 NaN NaN 0 240930 + 6561 17899 4031 4035 0.05899172692056709 EVELDQSVRR 10 Unmodified _EVELDQSVRR_ 0 0 0 REV__ENST00000367469.5_2_6:148593465-148761544:+|nuORF REV__ENST00000367469.5_2_6:148593465-148761544:+|nuORF MSMS UPN47_class_I_Rep_1 2 615.8275146484375 2 615.825483 1229.63641 NaN NaN NaN NaN NaN NaN NaN 76.4 1 79.815 79.315 80.315 3.4149 0 0 0 0.53105 1 18905 18905 1.4819 0.41044 1 + 6562 18471 4032 4036 8210 8210 0.030780950697590015 EVERNIEMV 9 Unmodified _EVERNIEMV_ 0 0 0 REV__ENSG00000148513|ENST00000361713|ANKRD30A;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B MULTI-SECPEP UPN46_class_I_Rep_3 1 560.31201171875 2 559.779156 1117.54376 0.38321 0.00021451 -3.5263 -0.0019739 -3.1431 -0.0017594 559.7770281332075 49.551 0.068756 49.551 49.513 49.582 0 11 7 2 0 0 0 0.11959 1 10408 10408 8.7454 2.0222 1 120580 + 6563 19592;20716 4033 4037 8211 8211 -0.010311259879699719 EVFDKTYQF 9 Unmodified _EVFDKTYQF_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS UPN48_class_I_Rep_1 5 588.7823486328125 2 588.782222 1175.54989 0.43411 0.0002556 0.25095 0.00014775 0.68505 0.00040335 588.7823078048026 53.066 0.73874 56.585 56.212 56.951 3.5192 88 52 2 0 0 0 0.013215 4 11074 11034;11057;11074;11123 67.838 41.57 1 291810 6564 2471 4034 4038 8212;8213;8214;8215 8214 -0.03086284484834323 EVFDKTYQF 9 Unmodified _EVFDKTYQF_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS UPN48_class_I_Rep_2 6 588.7825927734375 2 588.782222 1175.54989 0.53473 0.00031484 0.011483 6.7611E-06 0.54621 0.0003216 588.7820840639392 52.868 0.67611 56.478 56.215 56.891 3.6098 82 41 3 0 0 0 0.048662 3 11065 11018;11065;11106 49.554 16.769 1 240540 6565 2471 4034 4038 8216;8217;8218 8217 -0.03086284484834323 EVFDKTYQF 9 Unmodified _EVFDKTYQF_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS UPN48_class_I_Rep_3 7 588.7825317382812 2 588.782222 1175.54989 0.36885 0.00021717 0.28753 0.00016929 0.65638 0.00038647 588.7823137122501 53.018 0.69778 56.601 56.263 56.961 3.5836 94 43 3 0 0 0 0.028995 2 10964 10964;11007 57.722 17.772 1 323200 6566 2471 4034 4038 8219;8220 8219 -0.03086284484834323 EVFIFSSFDY 10 Unmodified _EVFIFSSFDY_ 0 0 0 REV__L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|234|1|anti-sense REV__L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|234|1|anti-sense MSMS UPN48_class_I_Rep_2 6 627.2900390625 2 627.289879 1252.56521 NaN NaN NaN NaN NaN NaN NaN 36.403 1 40.091 39.591 40.591 3.6877 0 0 0 0.53105 1 6114 6114 1.4819 0.15237 1 + 6567 29027 4035 4039 8221 8221 -0.05097417687602501 EVFKFNNR 8 Unmodified _EVFKFNNR_ 0 0 0 REV__L1MD3_dup4163|chr15:49872329-49873047:+|4.901223640469448|0.0981086035902817|5.64|151.0|42|2|anti-sense REV__L1MD3_dup4163|chr15:49872329-49873047:+|4.901223640469448|0.0981086035902817|5.64|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 527.2470092773438 2 527.277441 1052.54033 NaN NaN NaN NaN NaN NaN NaN 29.63 1 33.388 32.888 33.888 3.7578 0 0 0 0.40604 1 4734 4734 2.5775 0 1 + 6568 27479 4036 4040 8222 8222 0.016159920203108413 EVFLDTIISR 10 Unmodified _EVFLDTIISR_ 0 0 0 ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron;ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|1|intron;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3 ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron MULTI-MSMS UPN48_class_I_Rep_1 5 596.8329467773438 2 596.832246 1191.64994 0.48395 0.00028884 -0.12982 -7.7483E-05 0.35412 0.00021135 596.8320951783404 67.232 0.70676 70.684 70.376 71.083 3.4516 81 47 2 0 0 0 0.32913 4 15501 15372;15418;15461;15501 26.021 12.009 1 287380 6569 2529 4037 4041 8223;8224;8225;8226 8226 0.061779528489978475 EVFLDTIISR 10 Unmodified _EVFLDTIISR_ 0 0 0 ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron;ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|1|intron;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3 ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron MULTI-MSMS UPN48_class_I_Rep_2 6 596.8328247070312 2 596.832246 1191.64994 0.50106 0.00029905 0.14835 8.8537E-05 0.64941 0.00038759 596.8322640383639 67.125 0.66047 70.621 70.234 70.894 3.4964 77 41 2 0 0 0 0.16935 3 15340 15340;15383;15426 63.227 17.488 1 322280 6570 2529 4037 4041 8227;8228;8229 8227 0.061779528489978475 EVFLDTIISR 10 Unmodified _EVFLDTIISR_ 0 0 0 ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron;ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|1|intron;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3 ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron ENSG00000126216.15,TUBGCP3,chr13,-,I13.1,112527485,112544555|31|18.57|4|intron MULTI-MSMS UPN48_class_I_Rep_3 7 596.8323364257812 2 596.832246 1191.64994 0.57664 0.00034416 -0.081679 -4.8748E-05 0.49496 0.00029541 596.8321380872175 67.053 0.533 70.561 70.235 70.768 3.5077 69 35 2 0 0 0 0.21193 4 15201 15201;15240;15283;15324 47.732 18.067 1 233630 6571 2529 4037 4041 8230;8231;8232;8233 8230 0.061779528489978475 EVFPPLQFF 9 Unmodified _EVFPPLQFF_ 0 0 0 L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|111|2|anti-sense;L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|153|3|anti-sense L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|111|2|anti-sense L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|111|2|anti-sense MSMS UPN48_class_I_Rep_1 5 562.29296875 2 562.294768 1122.57498 NaN NaN NaN NaN NaN NaN NaN 54.835 1 58.343 57.843 58.843 3.5082 0 0 0 0.29868 1 11648 11648 10.824 0 1 6572 8777 4038 4042 8234 8234 0.01859815108446128 EVFQRTEL 8 Unmodified _EVFQRTEL_ 0 0 0 ENST00000392244.7_1_2:203071532-203071586:-|nuORF ENST00000392244.7_1_2:203071532-203071586:-|nuORF ENST00000392244.7_1_2:203071532-203071586:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 511.2695007324219 2 511.269281 1020.52401 0.2224 0.00011371 0.47237 0.00024151 0.69477 0.00035521 511.26966607113013 48.065 1.0423 51.801 51.421 52.464 3.7361 132 74 3 0 0 0 0.82752 1 9633 9633 19.257 4.0085 1 252460 6573 6520 4039 4043 8235 8235 0.0145686606357458 EVFSAFVLLP 10 Unmodified _EVFSAFVLLP_ 0 0 0 REV__L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|74|2|anti-sense REV__L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|74|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.314697265625 2 561.3157 1120.61685 NaN NaN NaN NaN NaN NaN NaN 95.416 1 99.324 98.824 99.824 3.9084 0 0 0 0.53105 1 22617 22617 10.824 0.75 1 + 6574 29153 4040 4044 8236 8236 0.06136370796957635 EVFSMAGVVVR 11 Oxidation (M) _EVFSM(Oxidation (M))AGVVVR_ EVFSM(1)AGVVVR EVFSM(57)AGVVVR 0 0 1 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MSMS UPN48_class_I_Rep_1 5 605.3196411132812 2 605.318448 1208.62234 NaN NaN NaN NaN NaN NaN NaN 47.558 1 51.08 50.58 51.58 3.5219 0 0 0 0.0013604 1 9412 9412 57.249 32.258 1 6575 1445 4041 4045 8237 8237 40 0.02637726317107081 EVFSMAGVVVR 11 Oxidation (M) _EVFSM(Oxidation (M))AGVVVR_ EVFSM(1)AGVVVR EVFSM(61)AGVVVR 0 0 1 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS UPN48_class_I_Rep_3 7 605.3181762695312 2 605.318448 1208.62234 0.47089 0.00028504 0.26173 0.00015843 0.73263 0.00044347 605.318507508313 47.485 0.5048 51.12 50.922 51.426 3.6352 59 46 2 0 0 0 0.13954 1 9361 9361 61.09 34.822 1 208380 6576 1445 4041 4045 8238 8238 40 0.02637726317107081 EVFSMAGVVVR 11 Unmodified _EVFSMAGVVVR_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MSMS UPN48_class_I_Rep_1 5 597.3214721679688 2 597.320991 1192.62743 NaN NaN NaN NaN NaN NaN NaN 61.205 1 64.673 64.173 65.173 3.4678 0 0 0 0.38417 1 13598 13598 6.6304 3.3491 1 6577 1445 4041 4046 8239 8239 0.03882030179738649 EVFSTLWTY 9 Unmodified _EVFSTLWTY_ 0 0 0 REV__AluJo_dup74698|chr20:36590565-36590858:-|1.195994774416141|0.0837124957538925|3.84|151.0|16|2|anti-sense REV__AluJo_dup74698|chr20:36590565-36590858:-|1.195994774416141|0.0837124957538925|3.84|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_2 3 573.2775268554688 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 44.681 1 48.036 47.536 48.536 3.3556 0 0 0 0.37476 1 9342 9342 6.7232 0.99131 1 + 6578 17020 4042 4047 8240 8240 -0.022413829964762044 EVFTNWCY 8 Unmodified _EVFTNWCY_ 0 0 0 REV__ENST00000545576.1_1_12:8756882-8757648:-|nuORF REV__ENST00000545576.1_1_12:8756882-8757648:-|nuORF MSMS UPN48_class_I_Rep_3 7 531.221435546875 2 531.223485 1060.43242 NaN NaN NaN NaN NaN NaN NaN 75.961 1 79.544 79.044 80.044 3.5831 0 0 0 0.40643 1 17874 17874 2.0598 1.2661 1 + 6579 18465 4043 4048 8241 8241 -0.09538140625272717 EVFTNWCY 8 Unmodified _EVFTNWCY_ 0 0 0 REV__ENST00000545576.1_1_12:8756882-8757648:-|nuORF REV__ENST00000545576.1_1_12:8756882-8757648:-|nuORF MSMS UPN48_class_I_Rep_3 7 531.2214965820312 2 531.223485 1060.43242 NaN NaN NaN NaN NaN NaN NaN 76.153 1 79.736 79.236 80.236 3.5831 0 0 0 0.40643 1 17927 17927 2.0598 1.2661 1 + 6580 18465 4043 4048 8242 8242 -0.09538140625272717 EVFTPVFER 9 Unmodified _EVFTPVFER_ 0 0 0 ENST00000475065.5_1_7:102963144-102967123:-|nuORF;DNAJC2|p.K497Qfs*14|1|0.18|ENSG00000105821|chr7:103316027-103316028|-/G|frameshift_variant;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2;ENST00000464253.5_1_7:102964930-102985008:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 562.2925415039062 2 562.292756 1122.57096 0.49445 0.00027803 -0.67569 -0.00037994 -0.18124 -0.00010191 562.2923309261944 54.964 0.52422 58.472 58.195 58.719 3.5082 46 32 2 0 0 0 0.2924 3 11692 11692;11717;11751 14.405 5.8121 1 140090 6581 659 4044 4049 8243;8244;8245 8243 0.014577256147049411 EVFTPVFER 9 Unmodified _EVFTPVFER_ 0 0 0 ENST00000475065.5_1_7:102963144-102967123:-|nuORF;DNAJC2|p.K497Qfs*14|1|0.18|ENSG00000105821|chr7:103316027-103316028|-/G|frameshift_variant;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2;ENST00000464253.5_1_7:102964930-102985008:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 562.29248046875 2 562.292756 1122.57096 0.60753 0.00034161 -0.94633 -0.00053211 -0.3388 -0.0001905 562.2921110017701 54.904 0.67421 58.46 58.152 58.826 3.5559 73 41 2 0 0 0 0.45441 1 11691 11691 4.897 1.9018 1 117820 6582 659 4044 4049 8246 8246 0.014577256147049411 EVFTPVFER 9 Unmodified _EVFTPVFER_ 0 0 0 ENST00000475065.5_1_7:102963144-102967123:-|nuORF;DNAJC2|p.K497Qfs*14|1|0.18|ENSG00000105821|chr7:103316027-103316028|-/G|frameshift_variant;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2;ENST00000464253.5_1_7:102964930-102985008:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 562.2933959960938 2 562.292756 1122.57096 0.29526 0.00016602 -0.27039 -0.00015204 0.024878 1.3989E-05 562.2925032012821 54.879 0.72676 58.449 58.11 58.837 3.5694 63 43 2 0 0 0 0.21414 1 11573 11573 19.362 9.288 1 105110 6583 659 4044 4049 8247 8247 0.014577256147049411 EVFTTLEIT 9 Unmodified _EVFTTLEIT_ 0 0 0 ENSG00000197763|ENST00000524230|TXNRD3;ENST00000518740.5_2_3:126326756-126328052:-|nuORF;ENST00000524230.6_3_3:126326756-126373974:-|nuORF ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 MULTI-SECPEP UPN48_class_I_Rep_3 7 526.30517578125 2 526.779148 1051.54374 0.35292 0.00018591 0.97607 0.00051417 1.329 0.00070009 526.7796143338905 56.085 0.5261 59.64 59.452 59.979 3.5554 73 45 2 0 0 0 0.11705 1 11915 11915 10.824 3.5347 1 171570 6584 5392 4045 4050 8248 8248 0.020031972836477507 EVFYIWQK 8 Unmodified _EVFYIWQK_ 0 0 0 L1ME1_dup8013|chr4:73193951-73194650:-|1.6590739407000832|0.0156369319993845|6.73|151.0|23|3|sense L1ME1_dup8013|chr4:73193951-73194650:-|1.6590739407000832|0.0156369319993845|6.73|151.0|23|3|sense L1ME1_dup8013|chr4:73193951-73194650:-|1.6590739407000832|0.0156369319993845|6.73|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.295166015625 2 556.792392 1111.57023 0.44294 0.00024662 2.6814 0.001493 3.1243 0.0017396 556.7941566923138 65.867 0.056763 69.375 69.347 69.403 3.5077 5 4 2 0 0 0 0.82752 1 14909 14909 5.2307 1.2863 1 45792 6585 12440 4046 4051 8249 8249 0.018909309656464757 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.263916015625 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.314 1 41.819 41.319 42.319 3.5052 0 0 0 0.37476 1 6622 6622 6.7232 1.9672 1 6586 2670 4047 4052 8250 8250 0.03988883409158461 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.263916015625 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.447 1 41.952 41.452 42.452 3.5052 0 0 0 0.32573 1 6663 6663 9.3831 3.1773 1 6587 2670 4047 4052 8251 8251 0.03988883409158461 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.265380859375 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.54 1 42.044 41.544 42.544 3.5048 0 0 0 0.37476 1 6691 6691 6.7232 1.9672 1 6588 2670 4047 4052 8252 8252 0.03988883409158461 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.26361083984375 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.01 1 41.727 41.227 42.227 3.7164 0 0 0 0.37692 1 6570 6570 6.2058 1.4498 1 6589 2670 4047 4052 8253 8253 0.03988883409158461 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.2636413574219 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.126 1 41.842 41.342 42.342 3.7164 0 0 0 0.32573 1 6606 6606 9.3831 3.1773 1 6590 2670 4047 4052 8254 8254 0.03988883409158461 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.2636413574219 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.153 1 41.869 41.369 42.369 3.7164 0 0 0 0.32573 1 6615 6615 9.3831 3.1773 1 6591 2670 4047 4052 8255 8255 0.03988883409158461 EVGDIVVGR 9 Unmodified _EVGDIVVGR_ 0 0 0 ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 ENST00000463488.1_1_9:133569202-133574940:+|nuORF ENST00000463488.1_1_9:133569202-133574940:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.263427734375 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 38.108 1 41.768 41.268 42.268 3.6595 0 0 0 0.32573 1 6509 6509 9.3831 3.1773 1 6592 2670 4047 4052 8256 8256 0.03988883409158461 EVGEFPVVVQR 11 Unmodified _EVGEFPVVVQR_ 0 0 0 nc|ENSG00000146094|Q7L591-2|DOK3;nc|ENSG00000146094|Q7L591-4|DOK3;nc|ENSG00000146094|Q7L591-3|DOK3;ENSG00000146094|ENST00000510898|DOK3;nc|ENSG00000146094|Q7L591|DOK3 nc|ENSG00000146094|Q7L591-2|DOK3 nc|ENSG00000146094|Q7L591-2|DOK3 MSMS UPN48_class_I_Rep_1 5 629.8446655273438 2 629.843145 1257.67174 NaN NaN NaN NaN NaN NaN NaN 53.455 1 56.974 56.474 57.474 3.5192 0 0 0 0.38417 1 11221 11221 2.7352 0 1 6593 3426 4048 4053 8257 8257 0.05320757597564807 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN46_class_I_Rep_3 1 500.7747497558594 2 500.774731 999.534909 0.26472 0.00013257 0.10495 5.2559E-05 0.36968 0.00018513 500.7747404662753 48.32 0.68884 48.32 48.082 48.77 0 120 71 2 0 0 0 0.15375 3 10058 10022;10058;10096 65.474 19.774 1 1825300 + 6594 5729 4049 4054 8258;8259;8260 8259 0.03512268437862076 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_1 2 500.7748107910156 2 500.774731 999.534909 -0.14527 -7.2747E-05 0.26675 0.00013358 0.12148 6.0834E-05 500.7748847358488 43.404 0.6938 47.092 46.819 47.513 3.6875 66 39 2 0 0 0 0.38974 2 8919 8919;8961 20.415 3.3016 1 123980 + 6595 5729 4049 4054 8261;8262 8261 0.03512268437862076 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_2 3 500.77490234375 2 500.774731 999.534909 -0.078456 -3.9289E-05 0.14748 7.3854E-05 0.069024 3.4566E-05 500.7747861889847 43.865 0.67777 47.223 46.847 47.525 3.358 74 36 3 0 0 0 0.40112 2 9060 9060;9104 19.362 3.2128 1 111990 + 6596 5729 4049 4054 8263;8264 8263 0.03512268437862076 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_3 4 500.7750549316406 2 500.774731 999.534909 -0.046311 -2.3191E-05 0.055156 2.7621E-05 0.0088449 4.4293E-06 500.7747110577189 43.889 0.63673 47.131 46.85 47.487 3.2419 70 39 3 0 0 0 0.4965 1 9221 9221 12.241 2.8575 1 145140 + 6597 5729 4049 4054 8265 8265 0.03512268437862076 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 500.77532958984375 2 500.774731 999.534909 0.20069 0.0001005 -0.17074 -8.55E-05 0.029959 1.5003E-05 500.77475713356523 43.979 0.47674 47.492 47.243 47.719 3.5132 63 37 2 0 0 0 0.34027 3 8318 8262;8279;8318 24.991 3.454 1 181030 + 6598 5729 4049 4054 8266;8267;8268 8268 0.03512268437862076 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_2 6 500.7748718261719 2 500.774731 999.534909 0.21797 0.00010915 -0.12958 -6.4892E-05 0.088385 4.4261E-05 500.7747617163186 43.601 0.60162 47.362 47.093 47.695 3.7617 70 45 2 0 0 0 0.43106 2 8234 8192;8234 17.113 4.3315 1 156650 + 6599 5729 4049 4054 8269;8270 8270 0.03512268437862076 EVGGEALGRL 10 Unmodified _EVGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 500.7747802734375 2 500.774731 999.534909 0.17833 8.9305E-05 0.20869 0.0001045 0.38702 0.00019381 500.77479518360104 43.805 0.56701 47.444 47.225 47.792 3.6385 64 36 3 0 0 0 0.52562 2 8177 8177;8215 8.7454 2.0222 1 146760 + 6600 5729 4049 4054 8271;8272 8271 0.03512268437862076 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN46_class_I_Rep_3 1 557.31591796875 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 65.588 1 65.588 65.088 66.088 0 0 0 0 0.38417 1 14833 14833 6.6304 3.0339 1 + 6601 5729 4050 4055 8273 8273 0.06716799534774509 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN46_class_I_Rep_3 1 557.3154907226562 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 65.608 1 65.608 65.108 66.108 0 0 0 0 0.043118 1 14838 14838 28.495 9.2375 1 + 6602 5729 4050 4055 8274 8274 0.06716799534774509 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN47_class_I_Rep_1 2 557.3165283203125 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 59.819 1 63.217 62.717 63.717 3.3982 0 0 0 0.032642 1 13918 13918 29.841 0.759 1 + 6603 5729 4050 4055 8275 8275 0.06716799534774509 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN47_class_I_Rep_1 2 557.3169555664062 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 60.035 1 63.433 62.933 63.933 3.3982 0 0 0 0.077509 1 13985 13985 24.991 5.734 1 + 6604 5729 4050 4055 8276 8276 0.06716799534774509 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 557.3173828125 2 557.316763 1112.61897 0.63138 0.00035188 -0.37138 -0.00020698 0.26 0.0001449 557.8179917492803 60.221 0.41376 63.694 63.421 63.835 3.4737 47 28 2 0 0 0 0.29316 3 13334 13278;13283;13334 34.932 13.395 1 186030 + 6605 5729 4050 4055 8277;8278;8279 8279 0.06716799534774509 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_2 6 557.3173828125 2 557.316763 1112.61897 0.57041 0.0003179 -0.27122 -0.00015115 0.29919 0.00016674 557.3166358528471 60.135 0.50191 63.622 63.414 63.916 3.4868 57 42 2 0 0 0 0.13819 4 13296 13199;13237;13255;13296 57.249 24.463 1 197180 + 6606 5729 4050 4055 8280;8281;8282;8283 8283 0.06716799534774509 EVGGEALGRLL 11 Unmodified _EVGGEALGRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 557.3164672851562 2 557.316763 1112.61897 0.38789 0.00021618 -0.076059 -4.2389E-05 0.31183 0.00017379 557.3167851756949 60.052 0.66368 63.569 63.211 63.874 3.5169 73 57 2 0 0 0 0.2944 3 13128 13085;13128;13169 27.223 8.752 1 131250 + 6607 5729 4050 4055 8284;8285;8286 8285 0.06716799534774509 EVGKEFDAIL 10 Unmodified _EVGKEFDAIL_ 0 0 0 nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA nc|ENSG00000119125|Q9Y2T3-2|GDA nc|ENSG00000119125|Q9Y2T3-2|GDA MULTI-MSMS UPN47_class_I_Rep_2 3 560.7980346679688 2 560.797872 1119.58119 0.048573 2.7239E-05 -0.042926 -2.4073E-05 0.0056471 3.1669E-06 560.7979703006964 12.623 0.24672 16.011 15.908 16.155 3.3885 61 30 3 0 0 0 0.56189 1 111 111 2.4985 2.4985 1 82721 6608 2272 4051 4056 8287 8287 0.02618288549274439 EVGLHIALI 9 Unmodified _EVGLHIALI_ 0 0 0 REV__L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense REV__L1MB8_dup2396|chr2:233358455-233359099:-|1.6152711719456163|0.0321667123742267|5.65|151.0|31|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7582702636719 2 482.794935 963.575317 0.2371 0.00011447 1.2864 0.00062109 1.5235 0.00073556 482.7954271869494 46.7 0.039406 46.7 46.68 46.72 0 8 2 4 0 0 0 0.12099 1 9590 9590 3.5965 3.5965 1 2684600 + 6609 26395 4052 4057 8288 8288 0.09207234828261335 EVGMRVENNV 10 Unmodified _EVGMRVENNV_ 0 0 0 L1MC4_dup5180|chr3:136305775-136307693:+|1.1506041224818089|0.0176232270477154|6.03|151.0|46|2|sense L1MC4_dup5180|chr3:136305775-136307693:+|1.1506041224818089|0.0176232270477154|6.03|151.0|46|2|sense L1MC4_dup5180|chr3:136305775-136307693:+|1.1506041224818089|0.0176232270477154|6.03|151.0|46|2|sense MSMS UPN47_class_I_Rep_3 4 573.7827758789062 2 573.78223 1145.54991 NaN NaN NaN NaN NaN NaN NaN 53.088 1 56.283 55.783 56.783 3.1948 0 0 0 0.53105 1 11947 11947 2.9952 0.49676 1 6610 11498 4053 4058 8289 8289 -0.017046077564600637 EVHWHEAHKF 10 Unmodified _EVHWHEAHKF_ 0 0 0 ENST00000567360.1_1_15:75650538-75650949:-|nuORF;ENST00000566099.5_1_15:75649132-75651406:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1 ENST00000567360.1_1_15:75650538-75650949:-|nuORF ENST00000567360.1_1_15:75650538-75650949:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 440.7992248535156 3 440.547511 1318.6207 0.13306 5.862E-05 1.0846 0.00047782 1.2177 0.00053644 440.54803616375096 61.269 0.062737 64.736 64.692 64.754 3.4678 7 5 2 0 0 0 0.84575 1 13613 13613 1.7423 0.14999 1 44492 6611 3173 4054 4059 8290 8290 -0.025861466566539093 EVIAYILER 9 Unmodified _EVIAYILER_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MULTI-MSMS UPN48_class_I_Rep_2 6 553.3147583007812 2 553.316232 1104.61791 0.55441 0.00030677 -0.039977 -2.212E-05 0.51444 0.00028465 553.3161588606672 61.323 0.50545 64.801 64.418 64.923 3.4785 57 43 2 0 0 0 0.0055879 3 13614 13578;13614;13618 80.676 40.726 1 149430 6612 2006 4055 4060 8291;8292;8293 8292 0.06978585165848017 EVIAYILER 9 Unmodified _EVIAYILER_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MULTI-MSMS UPN48_class_I_Rep_3 7 553.3159790039062 2 553.316232 1104.61791 0.38557 0.00021334 -0.6664 -0.00036873 -0.28083 -0.00015539 553.3161398063278 61.075 0.35535 64.588 64.496 64.851 3.5128 40 29 3 0 0 0 0.37318 1 13501 13501 9.544 9.544 1 133210 6613 2006 4055 4060 8294 8294 0.06978585165848017 EVIAYILER 9 Unmodified _EVIAYILER_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 553.316232 1104.61791 0.38557 0.00021334 -0.6664 -0.00036873 -0.28083 -0.00015539 553.3161398063278 61.075 0.35535 64.588 64.496 64.851 3.5128 -0.10656 -0.00023982 NaN 80.676 40 29 3 NaN NaN NaN NaN 0 NaN NaN 0 133210 6614 2006 4055 4060 0.06978585165848017 EVIFVAVFR 9 Unmodified _EVIFVAVFR_ 0 0 0 nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3 nc|ENSG00000115107|Q658P3-4|STEAP3 nc|ENSG00000115107|Q658P3-4|STEAP3 MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.316035 1078.61752 NaN NaN NaN NaN NaN NaN NaN 36.265 1 36.265 35.765 36.765 0 0 0 0 0.38639 1 6702 6702 3.9444 0.66309 1 6615 2108 4056 4061 8295 8295 0.08135210236650892 EVIKDHLQK 9 Unmodified _EVIKDHLQK_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS UPN48_class_I_Rep_1 5 555.3187255859375 2 555.319306 1108.62406 NaN NaN NaN NaN NaN NaN NaN 96.324 1 99.937 99.437 100.44 3.6124 0 0 0 0.38916 1 23202 23202 3.2813 0 1 6616 3538 4057 4062 8296 8296 0.07409103397344552 EVILIDPFHK 10 Unmodified _EVILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN48_class_I_Rep_1 5 605.8453369140625 2 605.845156 1209.67576 0.58765 0.00035602 0.031127 1.8858E-05 0.61878 0.00037488 605.8450549027356 60.809 1.1034 64.283 63.899 65.002 3.4737 250 93 4 0 0 0 7.6176E-07 7 13457 13380;13416;13457;13495;13535;13570;13608 139.78 66.814 1 2370700 6617 4689 4058 4063 8297;8298;8299;8300;8301;8302;8303 8299 0.0793084709125651 EVILIDPFHK 10 Unmodified _EVILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN48_class_I_Rep_1 5 404.56689453125 3 404.23253 1209.67576 0.02592 1.0478E-05 0.10093 4.0798E-05 0.12685 5.1276E-05 404.56683391579935 60.789 1.2509 64.262 63.878 65.129 3.4737 276 106 4 0 0 0 0.21493 5 13505 13424;13464;13505;13543;13607 32.616 13.542 1 3913800 6618 4689 4058 4063 8304;8305;8306;8307;8308 8306 0.0793084709125651 EVILIDPFHK 10 Unmodified _EVILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN48_class_I_Rep_2 6 605.8452758789062 2 605.845156 1209.67576 0.55361 0.0003354 0.064843 3.9285E-05 0.61846 0.00037469 605.8450864088505 60.846 1.0283 64.325 63.858 64.887 3.4785 276 91 4 0 0 0 1.1815E-06 7 13384 13343;13384;13421;13458;13497;13536;13573 139.78 57.253 1 2731800 6619 4689 4058 4063 8309;8310;8311;8312;8313;8314;8315 8310 0.0793084709125651 EVILIDPFHK 10 Unmodified _EVILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN48_class_I_Rep_3 7 605.845458984375 2 605.845156 1209.67576 0.54501 0.00033019 0.021865 1.3247E-05 0.56687 0.00034344 605.8451084998803 60.719 1.008 64.232 63.722 64.73 3.5128 313 94 4 0 0 0 5.951E-07 7 13316 13236;13277;13316;13351;13387;13425;13464 151.48 68.951 1 3668200 6620 4689 4058 4063 8316;8317;8318;8319;8320;8321;8322 8318 0.0793084709125651 EVILIDPFHK 10 Unmodified _EVILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN48_class_I_Rep_3 7 404.56683349609375 3 404.23253 1209.67576 0.091932 3.7162E-05 0.067873 2.7437E-05 0.15981 6.4599E-05 404.56683186237757 60.719 1.273 64.232 63.643 64.916 3.5128 359 116 4 0 0 0 0.18503 5 13315 13276;13315;13354;13401;13441 46.475 16.044 1 4847500 6621 4689 4058 4063 8323;8324;8325;8326;8327 8324 0.0793084709125651 EVIQERRRALR 11 Unmodified _EVIQERRRALR_ 0 0 0 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 MULTI-MSMS UPN46_class_I_Rep_3 1 475.9517517089844 3 475.951419 1424.83243 0.25536 0.00012154 0.48813 0.00023232 0.74348 0.00035386 475.9515962997969 106.18 0.068192 106.18 106.17 106.23 0 10 5 2 0 0 0 0.68024 1 25896 25896 0.50596 0 1 397560 6622 4553 4059 4064 8328 8328 0.13700525034323618 EVIQERRRALR 11 Unmodified _EVIQERRRALR_ 0 0 0 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 MULTI-MATCH UPN47_class_I_Rep_1 2 3 475.951419 1424.83243 0.23632 0.00011248 0.33713 0.00016046 0.57345 0.00027293 475.9516034995004 102.07 0.21449 105.86 105.69 105.91 3.7888 -0.13367 -5.4612E-05 NaN 0.50596 49 30 2 NaN NaN NaN NaN 0 NaN NaN 0 80834 6623 4553 4059 4064 0.13700525034323618 EVIQERRRALR 11 Unmodified _EVIQERRRALR_ 0 0 0 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 MULTI-MATCH UPN48_class_I_Rep_3 7 3 475.951419 1424.83243 0.21374 0.00010173 0.15456 7.3561E-05 0.3683 0.00017529 475.9515497250052 102.48 0.062859 106.25 106.23 106.3 3.776 0.25806 -0.0003153 NaN 0.50596 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 60430 6624 4553 4059 4064 0.13700525034323618 EVIRATSV 8 Unmodified _EVIRATSV_ 0 0 0 REV__L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|24|2|sense REV__L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 437.7530517578125 2 437.753267 873.491981 NaN NaN NaN NaN NaN NaN NaN 41.975 1 45.655 45.155 46.155 3.6792 0 0 0 0.38444 1 8485 8485 13.906 0 1 + 6625 27676 4060 4065 8329 8329 0.05017498380414054 EVISELFFVRR 11 Unmodified _EVISELFFVRR_ 0 0 0 LTR19C_dup45|chr6:166988471-166989237:-|2.59889592403907|0.3155249879237667|3.04|151.0|37|1|anti-sense LTR19C_dup45|chr6:166988471-166989237:-|2.59889592403907|0.3155249879237667|3.04|151.0|37|1|anti-sense LTR19C_dup45|chr6:166988471-166989237:-|2.59889592403907|0.3155249879237667|3.04|151.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 465.59783935546875 3 465.597871 1393.77178 0.09917 4.6173E-05 -0.17483 -8.14E-05 -0.075658 -3.5226E-05 465.59772143007604 54.272 0.48615 57.786 57.476 57.962 3.5143 42 34 2 0 0 0 0.67462 1 11480 11480 1.0136 0.50762 1 162240 6626 15586 4061 4066 8330 8330 0.09064994931327419 EVISKLYAV 9 Unmodified _EVISKLYAV_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8 nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_3 4 511.3002624511719 2 511.30005 1020.58555 0.35415 0.00018108 -0.24038 -0.0001229 0.11377 5.8172E-05 511.29988986533675 51.813 0.48358 55.019 54.758 55.241 3.2055 33 24 2 0 0 0 0.42249 2 11568 11568;11594 6.7232 2.3939 1 60249 6627 3728 4062 4067 8331;8332 8331 0.07607797762841528 EVISLGLPFGK 11 Unmodified _EVISLGLPFGK_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MSMS UPN48_class_I_Rep_1 5 580.33984375 2 580.339707 1158.66486 NaN NaN NaN NaN NaN NaN NaN 71.51 1 74.976 74.476 75.476 3.466 0 0 0 0.26612 1 16723 16723 14.405 6.2499 1 6628 772 4063 4068 8333 8333 0.09187444716985738 EVISLINTR 9 Unmodified _EVISLINTR_ 0 0 0 ENST00000513627.1_1_5:175921035-175923719:+|nuORF;ENSG00000113194|ENST00000261942|FAF2 ENST00000513627.1_1_5:175921035-175923719:+|nuORF ENST00000513627.1_1_5:175921035-175923719:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 522.8059692382812 2 522.806031 1043.59751 0.27901 0.00014587 -0.13247 -6.9258E-05 0.14653 7.6608E-05 522.8059173254745 49.369 0.43761 52.894 52.705 53.143 3.5246 41 28 2 0 0 0 0.24411 1 9963 9963 17.443 3.0373 1 163180 6629 2033 4064 4069 8334 8334 0.07745414506052839 EVISLINTR 9 Unmodified _EVISLINTR_ 0 0 0 ENST00000513627.1_1_5:175921035-175923719:+|nuORF;ENSG00000113194|ENST00000261942|FAF2 ENST00000513627.1_1_5:175921035-175923719:+|nuORF ENST00000513627.1_1_5:175921035-175923719:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 522.8059692382812 2 522.806031 1043.59751 0.31815 0.00016633 -0.21276 -0.00011123 0.10539 5.51E-05 523.3074077535496 49.318 0.47427 52.947 52.724 53.198 3.6291 53 31 2 0 0 0 0.10956 1 9881 9881 32.037 3.543 1 156010 6630 2033 4064 4069 8335 8335 0.07745414506052839 EVISTPGVVAR 11 Unmodified _EVISTPGVVAR_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MSMS UPN48_class_I_Rep_1 5 564.3244018554688 2 564.324588 1126.63462 NaN NaN NaN NaN NaN NaN NaN 41.699 1 45.205 44.705 45.705 3.506 0 0 0 0.067401 1 7630 7630 26.021 6.7637 1 6631 2065 4065 4070 8336 8336 0.0763708605179545 EVISTPGVVAR 11 Unmodified _EVISTPGVVAR_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_2 6 564.3246459960938 2 564.324588 1126.63462 0.43014 0.00024274 -0.63484 -0.00035825 -0.20469 -0.00011551 564.3241046313036 41.454 0.47192 45.205 44.991 45.463 3.7509 86 53 2 0 0 0 0.16237 4 7567 7532;7563;7567;7615 43.982 12.714 1 146400 6632 2065 4065 4070 8337;8338;8339;8340 8339 0.0763708605179545 EVISTPGVVAR 11 Unmodified _EVISTPGVVAR_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_3 7 564.3242797851562 2 564.324588 1126.63462 0.35059 0.00019784 -0.36674 -0.00020696 -0.016155 -9.1165E-06 564.324199442603 41.621 0.57106 45.267 45.017 45.588 3.6458 82 57 2 0 0 0 0.28117 3 7523 7500;7523;7560 21.59 8.4104 1 104550 6633 2065 4065 4070 8341;8342;8343 8342 0.0763708605179545 EVITRQKQL 9 Unmodified _EVITRQKQL_ 0 0 0 nc|ENSG00000138161|Q86UP6-2|CUZD1;ENSG00000138161|ENST00000392790|CUZD1 nc|ENSG00000138161|Q86UP6-2|CUZD1 nc|ENSG00000138161|Q86UP6-2|CUZD1 MULTI-MSMS UPN47_class_I_Rep_1 2 558.3342895507812 2 557.83258 1113.65061 -0.037947 -2.1168E-05 0.00094342 5.2627E-07 -0.037004 -2.0642E-05 557.8326957104548 32.862 0.38172 36.575 36.511 36.893 3.7131 42 28 2 0 0 0 0.38714 2 5717 5717;5747 8.7454 0 1 47942 6634 3070 4066 4071 8344;8345 8344 0.09832792288693781 EVITRQKQL 9 Unmodified _EVITRQKQL_ 0 0 0 nc|ENSG00000138161|Q86UP6-2|CUZD1;ENSG00000138161|ENST00000392790|CUZD1 nc|ENSG00000138161|Q86UP6-2|CUZD1 nc|ENSG00000138161|Q86UP6-2|CUZD1 MULTI-MSMS UPN47_class_I_Rep_3 4 557.8320922851562 2 557.83258 1113.65061 -0.13432 -7.4926E-05 -0.15802 -8.8149E-05 -0.29234 -0.00016307 557.8325082311503 33.574 0.47929 36.849 36.527 37.007 3.2748 45 34 2 0 0 0 0.43982 1 5950 5950 5.7319 0 1 65795 6635 3070 4066 4071 8346 8346 0.09832792288693781 EVIWYIWY 8 Unmodified _EVIWYIWY_ 0 0 0 Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|64|3|anti-sense Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|64|3|anti-sense Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|64|3|anti-sense MSMS UPN46_class_I_Rep_3 1 586.2975463867188 2 586.294768 1170.57498 NaN NaN NaN NaN NaN NaN NaN 53.348 1 53.348 52.848 53.848 0 0 0 0 0.39624 1 11473 11473 9.3474 1.1919 1 6636 33388 4067 4072 8347 8347 -0.0034818489159533783 EVKDKILH 8 Unmodified _EVKDKILH_ 0 0 0 ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|94|3|sense ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|94|3|sense ERVL-B4-int_dup3802|chr20:8836475-8839500:+|2.367140603357883|0.0557658155534184|5.41|151.0|94|3|sense MSMS UPN47_class_I_Rep_2 3 491.2897644042969 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 39.32 1 42.699 42.199 43.199 3.3785 0 0 0 0.39996 1 7709 7709 7.9102 0 1 6637 7737 4068 4073 8348 8348 0.07442046822893644 EVKDPTRIY 9 Unmodified _EVKDPTRIY_ 0 0 0 ENST00000404977.6_1_1:204937408-204955114:+|nuORF;nc|ENSG00000163531|O94856-2|NFASC;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC ENST00000404977.6_1_1:204937408-204955114:+|nuORF ENST00000404977.6_1_1:204937408-204955114:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 560.802490234375 2 560.803488 1119.59242 0.33603 0.00018845 -0.23402 -0.00013124 0.10201 5.721E-05 560.8032893379739 54.384 0.52172 57.886 57.57 58.091 3.5014 36 22 2 0 0 0 0.43982 1 12312 12312 5.7319 0.83484 1 87557 6638 4015 4069 4074 8349 8349 0.03741110643431966 EVKHREKEEDN 11 Unmodified _EVKHREKEEDN_ 0 0 0 REV__nc|ENSG00000118900|Q9NPG3-2|UBN1 REV__nc|ENSG00000118900|Q9NPG3-2|UBN1 MULTI-MSMS UPN47_class_I_Rep_1 2 471.5634460449219 3 471.563667 1411.66917 -0.3792 -0.00017882 -0.17175 -8.0993E-05 -0.55096 -0.00025981 471.56372520804183 18.966 1.7552 22.547 22.024 23.779 3.5806 597 205 4 0 0 0 0.68132 1 1555 1555 0.40827 0.40827 1 354490 + 6639 18661 4070 4075 8350 8350 -0.020197425980541084 EVKHREKEEDN 11 Unmodified _EVKHREKEEDN_ 0 0 0 REV__nc|ENSG00000118900|Q9NPG3-2|UBN1 REV__nc|ENSG00000118900|Q9NPG3-2|UBN1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 471.563667 1411.66917 -0.79769 -0.00037616 0.77708 0.00036644 -0.02061 -9.7192E-06 471.5639612673078 19.455 0.062832 22.807 22.754 22.817 3.3514 0.12997 0.0013115 NaN 0.40827 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 18291 + 6640 18661 4070 4075 -0.020197425980541084 EVKISIMK 8 Unmodified _EVKISIMK_ 0 0 0 L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|53|2|sense L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|53|2|sense L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|53|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2823486328125 2 474.283346 946.552139 -0.062688 -2.9732E-05 -1.4067 -0.00066716 -1.4693 -0.00069689 474.28242649736694 27.568 0.16938 27.568 27.552 27.721 0 24 11 3 0 0 0 0.82752 1 4118 4118 4.756 0 1 1062200 6641 9396 4071 4076 8351 8351 0.07672472719298185 EVKPLWPKG 9 Unmodified _EVKPLWPKG_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1 ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MSMS UPN48_class_I_Rep_2 6 527.3070068359375 2 527.30821 1052.60187 NaN NaN NaN NaN NaN NaN NaN 34.809 1 38.483 37.983 38.983 3.6735 0 0 0 0.39428 1 5655 5655 2.0598 0.21551 1 6642 3775 4072 4077 8352 8352 0.07766923719623264 EVKRYIKYI 9 Unmodified _EVKRYIKYI_ 0 0 0 REV__L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|35|1|sense REV__L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|35|1|sense MSMS UPN46_class_I_Rep_3 1 606.3614501953125 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 35.48 1 35.48 34.98 35.98 0 0 0 0 0.39428 1 6465 6465 2.0598 0 1 + 6643 26137 4073 4078 8353 8353 0.11046839845243994 EVKSRQTL 8 Unmodified _EVKSRQTL_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-SECPEP UPN47_class_I_Rep_3 4 480.8133544921875 2 480.777274 959.539994 -0.77302 -0.00037165 0.27159 0.00013058 -0.50142 -0.00024107 480.77728868603896 14.371 0.30706 17.741 17.635 17.942 3.3697 71 37 3 0 0 0 0.72333 1 535 535 17.113 17.113 1 75054 6644 932 4074 4079 8354 8354 0.0586057230049164 EVKTQRSI 8 Unmodified _EVKTQRSI_ 0 0 0 REV__L1M4_dup8887|chr8:65755927-65756903:-|1.525240452067898|0.0636820270550786|4.58|151.0|40|3|sense REV__L1M4_dup8887|chr8:65755927-65756903:-|1.525240452067898|0.0636820270550786|4.58|151.0|40|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 480.8133239746094 2 480.777274 959.539994 -0.21446 -0.00010311 -0.39886 -0.00019176 -0.61332 -0.00029487 480.776948844079 14.334 0.34735 17.721 17.633 17.98 3.3871 71 43 2 0 0 0 0.72333 1 547 547 3.5965 0 1 83937 + 6645 24465 4075 4080 8355 8355 0.058605723004689025 EVLEYFHMEG 10 Unmodified _EVLEYFHMEG_ 0 0 0 REV__ENSG00000239305|ENST00000237455|RNF103 REV__ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS UPN47_class_I_Rep_1 2 627.2799072265625 2 627.278989 1252.54342 -0.00044955 -2.8199E-07 -0.33335 -0.00020911 -0.3338 -0.00020939 627.2788110795291 32.224 0.57559 35.937 35.728 36.303 3.7131 75 47 2 0 0 0 0.56333 1 5573 5573 1.4819 0 1 128940 + 6646 21321 4076 4081 8356 8356 -0.07274545707832658 EVLEYFHMEG 10 Unmodified _EVLEYFHMEG_ 0 0 0 REV__ENSG00000239305|ENST00000237455|RNF103 REV__ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS UPN47_class_I_Rep_2 3 627.2789916992188 2 627.278989 1252.54342 0.045834 2.8751E-05 -0.25933 -0.00016267 -0.2135 -0.00013392 627.2788726427244 32.46 0.59037 35.915 35.641 36.232 3.4547 66 41 2 0 0 0 0.56333 1 5561 5561 1.4819 0 1 140150 + 6647 21321 4076 4081 8357 8357 -0.07274545707832658 EVLEYFHMEG 10 Unmodified _EVLEYFHMEG_ 0 0 0 REV__ENSG00000239305|ENST00000237455|RNF103 REV__ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS UPN47_class_I_Rep_3 4 627.2796630859375 2 627.278989 1252.54342 -0.13777 -8.6418E-05 0.088688 5.5632E-05 -0.049079 -3.0786E-05 627.2790210078301 32.683 0.65703 35.97 35.695 36.352 3.2867 76 49 2 0 0 0 0.56333 1 5821 5821 1.4819 0 1 119770 + 6648 21321 4076 4081 8358 8358 -0.07274545707832658 EVLHIACKSDS 11 Unmodified _EVLHIACKSDS_ 0 0 0 L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|247|2|anti-sense L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|247|2|anti-sense L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|247|2|anti-sense MSMS UPN47_class_I_Rep_3 4 601.2963256835938 2 601.297713 1200.58087 NaN NaN NaN NaN NaN NaN NaN 60.49 1 63.655 63.155 64.155 3.1651 0 0 0 0.38417 1 14208 14208 1.0715 0.27783 1 6649 14488 4077 4082 8359 8359 -0.011394544422046238 EVLHNKSI 8 Unmodified _EVLHNKSI_ 0 0 0 REV__ENST00000492658.1_1_X:152771329-152774230:+|nuORF REV__ENST00000492658.1_1_X:152771329-152774230:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 470.266357421875 2 470.266542 938.51853 -0.74743 -0.00035149 0.30512 0.00014349 -0.44231 -0.00020801 470.26670759346985 23.683 0.68882 27.034 26.674 27.363 3.3509 91 54 2 0 0 0 0.82752 1 3035 3035 19.257 1.1106 1 110980 + 6650 20759 4078 4083 8360 8360 0.0468118727176261 EVLLFAYHFE 10 Unmodified _EVLLFAYHFE_ 0 0 0 REV__ENST00000260327.8_1_15:44816782-44816941:+|nuORF REV__ENST00000260327.8_1_15:44816782-44816941:+|nuORF MSMS UPN48_class_I_Rep_3 7 634.3213500976562 2 634.321514 1266.62847 NaN NaN NaN NaN NaN NaN NaN 74.418 1 77.969 77.469 78.469 3.5505 0 0 0 0.53105 1 17433 17433 3.2813 0 1 + 6651 21551 4079 4084 8361 8361 0.005825678202654672 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 634.319580078125 2 634.319502 1266.62445 0.4464 0.00028316 0.38898 0.00024673 0.83537 0.00052989 634.319761382334 74.179 0.27174 77.572 77.464 77.735 3.3937 39 24 2 0 0 0 0.55448 2 18261 18261;18269 4.897 4.897 1 92125 + 6652 17241 4080 4085 8362;8363 8362 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3201904296875 2 634.319502 1266.62445 0.44753 0.00028388 0.10067 6.3858E-05 0.54821 0.00034774 634.3196903940604 74.38 0.41402 77.685 77.407 77.821 3.3048 63 41 2 0 0 0 0.55448 2 18315 18315;18354 4.897 4.897 1 97711 + 6653 17241 4080 4085 8364;8365 8364 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.3193359375 2 634.319502 1266.62445 0.46486 0.00029487 0.29346 0.00018615 0.75832 0.00048102 634.3198561223708 74.348 0.41837 77.585 77.393 77.811 3.2363 73 43 2 0 0 0 0.56118 1 18416 18416 2.9952 2.9952 1 85348 + 6654 17241 4080 4085 8366 8366 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 634.3203735351562 2 634.319502 1266.62445 0.47077 0.00029862 -0.23779 -0.00015083 0.23299 0.00014779 634.3194271547582 74.305 0.52408 77.795 77.502 78.026 3.49 118 58 3 0 0 0 0.53004 4 17541 17504;17541;17573;17592 8.1555 8.1555 1 170650 + 6655 17241 4080 4085 8367;8368;8369;8370 8368 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 634.3203125 2 634.319502 1266.62445 0.49026 0.00031098 -0.028498 -1.8077E-05 0.46176 0.0002929 634.3194866875399 74.067 0.61343 77.645 77.401 78.014 3.5779 116 68 2 0 0 0 0.53004 4 17425 17391;17425;17455;17475 8.1555 8.1555 1 175380 + 6656 17241 4080 4085 8371;8372;8373;8374 8372 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.3196411132812 2 634.319502 1266.62445 0.66929 0.00042455 -0.16652 -0.00010563 0.50277 0.00031892 634.3192519941 74.075 0.35315 77.625 77.384 77.737 3.5505 89 43 3 0 0 0 0.53004 3 17347 17316;17347;17379 8.1555 8.1555 1 186560 + 6657 17241 4080 4085 8375;8376;8377 8376 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 634.319502 1266.62445 0.4464 0.00028316 0.38898 0.00024673 0.83537 0.00052989 634.319761382334 74.179 0.27174 77.572 77.464 77.735 3.3937 -0.07888 0.00052929 NaN 8.1555 39 24 2 NaN NaN NaN NaN 0 NaN NaN 0 92125 + 6658 17241 4080 4085 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 634.319502 1266.62445 0.44753 0.00028388 0.10067 6.3858E-05 0.54821 0.00034774 634.3196903940604 74.38 0.41402 77.685 77.407 77.821 3.3048 0.03362 0.00016353 NaN 8.1555 63 41 2 NaN NaN NaN NaN 0 NaN NaN 0 97711 + 6659 17241 4080 4085 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 634.319502 1266.62445 0.46486 0.00029487 0.29346 0.00018615 0.75832 0.00048102 634.3198561223708 74.348 0.41837 77.585 77.393 77.811 3.2363 -0.066324 0.00040811 NaN 8.1555 73 43 2 NaN NaN NaN NaN 0 NaN NaN 0 85348 + 6660 17241 4080 4085 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 634.319502 1266.62445 0.47077 0.00029862 -0.23779 -0.00015083 0.23299 0.00014779 634.3194271547582 74.305 0.52408 77.795 77.502 78.026 3.49 0.14366 -0.00026585 NaN 8.1555 118 58 3 NaN NaN NaN NaN 0 NaN NaN 0 170650 + 6661 17241 4080 4085 0.0018047832656975515 EVLLSRYDWS 10 Unmodified _EVLLSRYDWS_ 0 0 0 REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense REV__AluY_dup96263|chr19:11894178-11894439:-|1.0481033146682612|0.0561527230886695|4.22|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 634.319502 1266.62445 0.66929 0.00042455 -0.16652 -0.00010563 0.50277 0.00031892 634.3192519941 74.075 0.35315 77.625 77.384 77.737 3.5505 -0.025732 -0.00017544 NaN 8.1555 89 43 3 NaN NaN NaN NaN 0 NaN NaN 0 186560 + 6662 17241 4080 4085 0.0018047832656975515 EVLLVFILQTH 11 Unmodified _EVLLVFILQTH_ 0 0 0 REV__AluSg_dup24259|chr12:54291684-54291981:-|1.1344363006149338|0.0375985981401188|4.92|150.0|14|2|anti-sense REV__AluSg_dup24259|chr12:54291684-54291981:-|1.1344363006149338|0.0375985981401188|4.92|150.0|14|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 437.75335693359375 3 437.927218 1310.75982 -0.72704 -0.00031839 1.3981 0.00061225 0.67102 0.00029386 437.9276898134933 42.555 0.17747 45.794 45.664 45.841 3.2394 12 10 2 0 0 0 22.551 1 8720 8720 1.3296 0.55311 1 40555 + 6663 17094 4081 4086 8378 8378 0.11687378188184994 EVLMYLFSVL 10 Unmodified _EVLMYLFSVL_ 0 0 0 L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|73|3|anti-sense L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|73|3|anti-sense L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|73|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 405.2222595214844 3 405.222754 1212.64643 -0.74127 -0.00030038 -0.70732 -0.00028662 -1.4486 -0.000587 405.2225068940285 47.763 0.93592 51.003 50.95 51.886 3.2405 121 67 3 0 0 0 0.51565 1 10343 10343 5.7834 2.1908 1 396850 6664 12812 4082 4087 8379 8379 0.048615667507874605 EVLRKYYR 8 Unmodified _EVLRKYYR_ 0 0 0 L1M6_dup691|chr2:143688573-143690363:-|1.346455529872664|0.0094247747939457|7.16|151.0|68|3|sense L1M6_dup691|chr2:143688573-143690363:-|1.346455529872664|0.0094247747939457|7.16|151.0|68|3|sense L1M6_dup691|chr2:143688573-143690363:-|1.346455529872664|0.0094247747939457|7.16|151.0|68|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.3246459960938 2 563.822015 1125.62948 0.45011 0.00025378 -0.0051954 -2.9293E-06 0.44491 0.00025085 564.323986766289 41.859 0.34442 45.367 45.179 45.523 3.5079 76 34 3 0 0 0 0.82752 1 7678 7678 13.508 0.46542 1 180490 6665 9223 4083 4088 8380 8380 0.07168826979818732 EVLSVSKIL 9 Unmodified _EVLSVSKIL_ 0 0 0 nc|ENSG00000197705|Q9P2G3-2|KLHL14;KLHL14|p.Y437Sfs*10|1|0.08|ENSG00000197705|chr18:32680528-32680528|T/-|frameshift_variant;ENSG00000197705|ENST00000359358|KLHL14 nc|ENSG00000197705|Q9P2G3-2|KLHL14 nc|ENSG00000197705|Q9P2G3-2|KLHL14 MSMS UPN47_class_I_Rep_3 4 494.3095397949219 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 58.95 1 62.116 61.616 62.616 3.1658 0 0 0 0.38073 1 13737 13737 5.2969 0 1 6666 5384 4084 4089 8381 8381 0.10736084279915303 EVLTEVVPI 9 Unmodified _EVLTEVVPI_ 0 0 0 ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C MSMS UPN47_class_I_Rep_1 2 499.79034423828125 2 499.792058 997.569563 NaN NaN NaN NaN NaN NaN NaN 24 1 27.729 27.229 28.229 3.7298 0 0 0 0.38639 1 3063 3063 3.9444 0 1 6667 5002 4085 4090 8382 8382 0.07068091525957243 EVLTPLKW 8 Unmodified _EVLTPLKW_ 0 0 0 ENSG00000125363|ENST00000380714|AMELX;ENSG00000099721|ENST00000651267|AMELY ENSG00000125363|ENST00000380714|AMELX ENSG00000125363|ENST00000380714|AMELX MSMS UPN46_class_I_Rep_3 1 493.29302978515625 2 493.289485 984.564418 NaN NaN NaN NaN NaN NaN NaN 47.525 1 47.525 47.025 48.025 0 0 0 0 0.40581 1 9834 9834 2.8892 0 1 6668 1443 4086 4091 8383 8383 0.07151832453985207 EVLWFLTFA 9 Unmodified _EVLWFLTFA_ 0 0 0 REV__L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|351|3|anti-sense REV__L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|351|3|anti-sense MSMS UPN46_class_I_Rep_3 1 563.3023681640625 2 563.302593 1124.59063 NaN NaN NaN NaN NaN NaN NaN 58.426 1 58.426 57.926 58.926 0 0 0 0 0.39428 1 12859 12859 2.0598 0 1 + 6669 29772 4087 4092 8384 8384 0.03332101625460382 EVMRFFSD 8 Unmodified _EVMRFFSD_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MSMS UPN47_class_I_Rep_1 2 515.7525024414062 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 21.976 1 25.651 25.151 26.151 3.6749 0 0 0 0.40625 1 2476 2476 2.3027 0 1 6670 2558 4088 4093 8385 8385 -0.054584517339208105 EVMRFFSD 8 Unmodified _EVMRFFSD_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MSMS UPN48_class_I_Rep_2 6 515.7390747070312 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 27.553 1 31.184 30.684 31.684 3.6311 0 0 0 0.40625 1 3667 3667 2.3027 0 1 6671 2558 4088 4093 8386 8386 -0.054584517339208105 EVMRFFSD 8 Unmodified _EVMRFFSD_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MSMS UPN48_class_I_Rep_3 7 515.7540283203125 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 20.104 1 23.725 23.225 24.225 3.6215 0 0 0 0.40625 1 1646 1646 2.3027 0 1 6672 2558 4088 4093 8387 8387 -0.054584517339208105 EVNDPSLTIK 10 Unmodified _EVNDPSLTIK_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS UPN48_class_I_Rep_1 5 558.80322265625 2 558.300778 1114.587 0.49788 0.00027797 -0.24041 -0.00013422 0.25747 0.00014374 558.3005097277866 38.568 0.55419 42.073 41.797 42.352 3.5048 103 46 3 0 0 0 0.29657 5 6698 6631;6671;6698;6710;6748 34.222 18.973 1 225070 6673 5448 4089 4094 8388;8389;8390;8391;8392 8390 0.034293870609417354 EVNDPSLTIK 10 Unmodified _EVNDPSLTIK_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS UPN48_class_I_Rep_2 6 558.3003540039062 2 558.300778 1114.587 0.45647 0.00025485 -0.34676 -0.0001936 0.10971 6.125E-05 558.3005610839392 38.227 0.65094 41.943 41.68 42.331 3.7164 103 62 2 0 0 0 0.3081 6 6629 6571;6589;6629;6663;6701;6721 30.703 14.554 1 198890 6674 5448 4089 4094 8393;8394;8395;8396;8397;8398 8395 0.034293870609417354 EVNDPSLTIK 10 Unmodified _EVNDPSLTIK_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MSMS UPN48_class_I_Rep_2 6 558.30029296875 2 558.300778 1114.587 NaN NaN NaN NaN NaN NaN NaN 38.6 1 42.316 41.816 42.816 3.7164 0 0 0 0.53105 1 6749 6749 2.4985 0.43874 1 6675 5448 4089 4094 8399 8399 0.034293870609417354 EVNDPSLTIK 10 Unmodified _EVNDPSLTIK_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS UPN48_class_I_Rep_3 7 558.3007202148438 2 558.300778 1114.587 0.3199 0.0001786 -0.15685 -8.757E-05 0.16305 9.1032E-05 558.3006071776412 38.383 0.66133 42.043 41.738 42.399 3.6595 104 63 2 0 0 0 0.42663 5 6568 6515;6526;6568;6605;6643 17.443 9.2871 1 272160 6676 5448 4089 4094 8400;8401;8402;8403;8404 8402 0.034293870609417354 EVNETIPNPY 10 Unmodified _EVNETIPNPY_ 0 0 0 nc|ENSG00000071203|Q9NXJ0-2|MS4A12;ENSG00000071203|ENST00000016913|MS4A12 nc|ENSG00000071203|Q9NXJ0-2|MS4A12 nc|ENSG00000071203|Q9NXJ0-2|MS4A12 MULTI-MSMS UPN47_class_I_Rep_1 2 588.2828369140625 2 588.282586 1174.55062 0.39145 0.00023029 0.064218 3.7778E-05 0.45567 0.00026806 588.2826695215987 58.167 0.49227 61.604 61.342 61.834 3.437 77 30 3 0 0 0 0.52562 1 13425 13425 8.7454 0.83525 1 264590 6677 1085 4090 4095 8405 8405 -0.029674898357598067 EVNETIPNPY 10 Unmodified _EVNETIPNPY_ 0 0 0 nc|ENSG00000071203|Q9NXJ0-2|MS4A12;ENSG00000071203|ENST00000016913|MS4A12 nc|ENSG00000071203|Q9NXJ0-2|MS4A12 nc|ENSG00000071203|Q9NXJ0-2|MS4A12 MULTI-MSMS UPN47_class_I_Rep_2 3 588.7841186523438 2 588.282586 1174.55062 0.51966 0.00030571 0.074011 4.354E-05 0.59367 0.00034925 588.2826197205549 58.456 0.61855 61.738 61.41 62.029 3.2818 62 34 3 0 0 0 0.52562 1 13513 13513 8.7454 0.83525 1 169170 6678 1085 4090 4095 8406 8406 -0.029674898357598067 EVNPQIPPLI 10 Unmodified _EVNPQIPPLI_ 0 0 0 Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|154|3|anti-sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|154|3|anti-sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|154|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.32421875 2 560.324057 1118.63356 0.50033 0.00028035 -0.0052526 -2.9431E-06 0.49508 0.0002774 560.3240643378491 70.393 0.52206 73.853 73.449 73.971 3.4598 66 43 2 0 0 0 0.55448 1 16431 16431 4.897 0.36815 1 214840 6679 33129 4091 4096 8407 8407 0.07898871682914432 EVPASPVVGI 10 Unmodified _EVPASPVVGI_ 0 0 0 AluSz_dup53676|chrX:74223311-74223564:-|1.8789389294423344|0.2320200571655205|3.02|151.0|17|3|anti-sense AluSz_dup53676|chrX:74223311-74223564:-|1.8789389294423344|0.2320200571655205|3.02|151.0|17|3|anti-sense AluSz_dup53676|chrX:74223311-74223564:-|1.8789389294423344|0.2320200571655205|3.02|151.0|17|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 484.2762756347656 2 484.276575 966.538597 -0.32259 -0.00015622 0.04776 2.3129E-05 -0.27483 -0.0001331 484.27652999664474 27.158 0.63547 30.924 30.605 31.241 3.7662 76 49 2 0 0 0 0.55983 1 4012 4012 3.9444 0 1 79608 6680 353 4092 4097 8408 8408 0.05398938211715176 EVPHSEKR 8 Unmodified _EVPHSEKR_ 0 0 0 nc|ENSG00000113303|Q6UX41-4|BTNL8;nc|ENSG00000113303|Q6UX41-7|BTNL8;nc|ENSG00000113303|Q6UX41-6|BTNL8;nc|ENSG00000168903|Q6UXE8-2|BTNL3;ENSG00000168903|ENST00000342868|BTNL3;ENSG00000113303|ENST00000340184|BTNL8 nc|ENSG00000113303|Q6UX41-4|BTNL8 nc|ENSG00000113303|Q6UX41-4|BTNL8 MSMS UPN47_class_I_Rep_2 3 491.2608947753906 2 491.259248 980.503943 NaN NaN NaN NaN NaN NaN NaN 40.069 1 43.44 42.94 43.94 3.3712 0 0 0 0.40625 1 7937 7937 2.3027 0 1 6681 2038 4093 4098 8409 8409 0.012911151236153273 EVPSFLVER 9 Unmodified _EVPSFLVER_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS UPN48_class_I_Rep_1 5 538.2921752929688 2 538.292756 1074.57096 0.38878 0.00020928 0.042278 2.2758E-05 0.43106 0.00023204 538.2927797455884 53.887 0.51924 57.401 57.152 57.671 3.5143 61 37 2 0 0 0 0.33908 1 11366 11366 11.495 2.7493 1 140100 6682 768 4094 4099 8410 8410 0.036657256147236694 EVPSFLVER 9 Unmodified _EVPSFLVER_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS UPN48_class_I_Rep_2 6 538.7946166992188 2 538.292756 1074.57096 0.54369 0.00029267 -0.1417 -7.6278E-05 0.40199 0.00021639 538.2925558758319 53.783 0.5074 57.39 57.142 57.649 3.6068 55 37 2 0 0 0 0.2924 2 11291 11291;11335 14.405 5.0223 1 118540 6683 768 4094 4099 8411;8412 8411 0.036657256147236694 EVPSFLVER 9 Unmodified _EVPSFLVER_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS UPN48_class_I_Rep_3 7 538.7952270507812 2 538.292756 1074.57096 0.42295 0.00022767 0.016217 8.7297E-06 0.43917 0.0002364 538.2927149492642 53.799 0.65756 57.382 57.107 57.764 3.5836 64 47 2 0 0 0 0.2924 2 11233 11221;11233 14.405 4.3315 1 168760 6684 768 4094 4099 8413;8414 8414 0.036657256147236694 EVPSVILK 8 Unmodified _EVPSVILK_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS UPN48_class_I_Rep_1 5 442.77655029296875 2 442.776211 883.537869 0.060979 2.7E-05 0.28536 0.00012635 0.34634 0.00015335 442.7762831816933 56.471 0.52519 59.973 59.7 60.225 3.5014 55 43 2 0 0 0 0.82752 1 12150 12150 8.5933 0 1 171260 6685 5035 4095 4100 8415 8415 0.09144143562673435 EVPSVILK 8 Unmodified _EVPSVILK_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS UPN48_class_I_Rep_2 6 442.7760009765625 2 442.776211 883.537869 0.24423 0.00010814 0.30269 0.00013402 0.54692 0.00024216 442.7761370027964 56.481 0.52943 60.014 59.646 60.176 3.5333 64 44 2 0 0 0 0.82752 1 12093 12093 9.3474 0 1 140720 6686 5035 4095 4100 8416 8416 0.09144143562673435 EVPSVLSLPSV 11 Unmodified _EVPSVLSLPSV_ 0 0 0 MLT1C_dup17768|chr18:63257924-63258325:+|1.4537401947215292|0.0711500505594243|4.35|151.0|23|2|anti-sense MLT1C_dup17768|chr18:63257924-63258325:+|1.4537401947215292|0.0711500505594243|4.35|151.0|23|2|anti-sense MLT1C_dup17768|chr18:63257924-63258325:+|1.4537401947215292|0.0711500505594243|4.35|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.8261108398438 2 563.821347 1125.62814 0.45011 0.00025378 1.1808 0.00066577 1.6309 0.00091955 564.323986766289 41.859 0.34442 45.367 45.179 45.523 3.5079 76 34 3 0 0 0 0.57992 1 7648 7648 5.7319 1.7875 1 180490 6687 16305 4096 4101 8417 8417 0.07035148100430888 EVQGFQSSF 9 Unmodified _EVQGFQSSF_ 0 0 0 REV__L1PA6_dup497|chr2:15316250-15322384:+|2.133365787077294|0.067297961701994|4.99|151.0|9|1|sense REV__L1PA6_dup497|chr2:15316250-15322384:+|2.133365787077294|0.067297961701994|4.99|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.7379760742188 2 514.737814 1027.46108 0.26753 0.00013771 -0.083161 -4.2806E-05 0.18437 9.4902E-05 514.7377510620313 64.806 0.45723 67.985 67.691 68.148 3.1795 56 36 2 0 0 0 0.15122 1 15512 15512 25.399 1.3787 1 76880 + 6688 29926 4097 4102 8418 8418 -0.05155699724468832 EVQTNQFY 8 Unmodified _EVQTNQFY_ 0 0 0 REV__ENST00000463733.5_1_7:127228552-127229672:+|nuORF REV__ENST00000463733.5_1_7:127228552-127229672:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 514.7376708984375 2 514.737814 1027.46108 0.042944 2.2105E-05 0.25815 0.00013288 0.30109 0.00015498 514.7378836194646 64.623 0.48003 67.879 67.72 68.2 3.2556 55 37 2 0 0 0 0.82752 2 15389 15389;15469 12.532 0 1 110140 + 6689 22452 4098 4103 8419;8420 8419 -0.051556997244460945 EVRKMFYNRLW 11 Unmodified _EVRKMFYNRLW_ 0 0 0 L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|22|3|sense L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|22|3|sense L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 514.606689453125 3 514.606373 1540.79729 NaN NaN NaN NaN NaN NaN NaN 37.088 1 40.79 40.29 41.29 3.7021 0 0 0 0.38417 1 6308 6308 0.45452 0.29519 1 6690 10955 4099 4104 8421 8421 0.048521461821565026 EVRPYDKGS 9 Unmodified _EVRPYDKGS_ 0 0 0 REV__ENSG00000160695|ENST00000621676|VPS11 REV__ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7633056640625 2 525.764363 1049.51417 -0.24964 -0.00013125 -0.90495 -0.00047579 -1.1546 -0.00060704 525.7636716977364 31.864 0.38475 35.164 35.026 35.411 3.2991 44 28 2 0 0 0 0.47197 1 5502 5502 3.5965 1.5367 1 71513 + 6691 19889 4100 4105 8422 8422 -0.008603219418091612 EVRVPDWVSG 10 Unmodified _EVRVPDWVSG_ 0 0 0 REV__ENST00000469141.6_1_1:36690601-36725081:+|nuORF REV__ENST00000469141.6_1_1:36690601-36725081:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 572.2933959960938 2 572.293288 1142.57202 -0.065175 -3.7299E-05 -0.13463 -7.7049E-05 -0.19981 -0.00011435 572.2931300032361 35.053 0.79919 38.739 38.474 39.273 3.6859 101 57 2 0 0 0 0.55983 1 6537 6537 3.9444 2.1002 1 199520 + 6692 22493 4101 4106 8423 8423 0.006439399836153825 EVSDVEIITR 10 Unmodified _EVSDVEIITR_ 0 0 0 ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8 ENST00000542613.5_1_9:95085577-95087599:-|nuORF ENST00000542613.5_1_9:95085577-95087599:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 580.8118286132812 2 580.81151 1159.60847 0.41104 0.00023873 -0.27015 -0.00015691 0.14088 8.1826E-05 580.8114551340159 44.571 0.19359 48.084 47.996 48.189 3.5132 16 13 2 0 0 0 0.54477 1 8503 8503 6.1918 1.8626 1 78058 6693 5401 4102 4107 8424 8424 0.03504772089650032 EVSDVEIITR 10 Unmodified _EVSDVEIITR_ 0 0 0 ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8 ENST00000542613.5_1_9:95085577-95087599:-|nuORF ENST00000542613.5_1_9:95085577-95087599:-|nuORF MSMS UPN48_class_I_Rep_3 7 580.8114624023438 2 580.81151 1159.60847 NaN NaN NaN NaN NaN NaN NaN 44.425 1 48.062 47.562 48.562 3.6372 0 0 0 0.53105 1 8389 8389 4.1895 1.8868 1 6694 5401 4102 4107 8425 8425 0.03504772089650032 EVSHVVCLKF 10 Unmodified _EVSHVVCLKF_ 0 0 0 REV__L1MC2_dup2348|chr6:149529840-149530304:+|1.218382425201623|0.0493608608200844|4.63|151.0|35|3|anti-sense REV__L1MC2_dup2348|chr6:149529840-149530304:+|1.218382425201623|0.0493608608200844|4.63|151.0|35|3|anti-sense MSMS UPN48_class_I_Rep_3 7 580.812255859375 2 580.810259 1159.60597 NaN NaN NaN NaN NaN NaN NaN 44.602 1 48.239 47.739 48.739 3.6372 0 0 0 0.53105 1 8444 8444 5.7319 0.50118 1 + 6695 26646 4103 4108 8426 8426 0.03254645151037039 EVSLQGINTR 10 Unmodified _EVSLQGINTR_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS UPN48_class_I_Rep_2 6 558.8038940429688 2 558.80402 1115.59349 0.44834 0.00025054 -0.22632 -0.00012647 0.22203 0.00012407 558.8038695322157 39.45 0.31894 43.18 42.99 43.309 3.7297 31 29 2 0 0 0 0.56189 1 7028 7028 2.4985 0 1 71863 6696 3791 4104 4109 8427 8427 0.040313250123290345 EVSLQGINTR 10 Unmodified _EVSLQGINTR_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MSMS UPN48_class_I_Rep_3 7 558.8040771484375 2 558.80402 1115.59349 NaN NaN NaN NaN NaN NaN NaN 39.468 1 43.124 42.624 43.624 3.6557 0 0 0 0.53105 1 6908 6908 2.4985 0 1 6697 3791 4104 4109 8428 8428 0.040313250123290345 EVSPLLKQY 9 Unmodified _EVSPLLKQY_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MSMS UPN47_class_I_Rep_3 4 538.7902221679688 2 538.802957 1075.59136 NaN NaN NaN NaN NaN NaN NaN 52.83 1 56.025 55.525 56.525 3.1948 0 0 0 0.38299 1 11867 11867 4.756 1.1595 1 6698 5266 4105 4110 8429 8429 0.05658896274530889 EVSPPVTVR 9 Unmodified _EVSPPVTVR_ 0 0 0 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 MULTI-MSMS UPN48_class_I_Rep_1 5 492.28009033203125 2 492.279649 982.544745 0.20856 0.00010267 -0.36281 -0.00017861 -0.15425 -7.5936E-05 492.27947345280006 35.237 0.56985 38.751 38.458 39.028 3.5144 99 57 2 0 0 0 0.17979 5 5750 5674;5677;5715;5750;5798 22.658 9.6156 1 143070 6699 3831 4106 4111 8430;8431;8432;8433;8434 8433 0.05277456443241135 EVSPPVTVR 9 Unmodified _EVSPPVTVR_ 0 0 0 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 MSMS UPN48_class_I_Rep_1 5 492.27984619140625 2 492.279649 982.544745 NaN NaN NaN NaN NaN NaN NaN 34.882 1 38.396 37.896 38.896 3.5144 0 0 0 0.38394 1 5636 5636 4.5289 0.58447 1 6700 3831 4106 4111 8435 8435 0.05277456443241135 EVSPPVTVR 9 Unmodified _EVSPPVTVR_ 0 0 0 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 MULTI-MSMS UPN48_class_I_Rep_2 6 492.2795715332031 2 492.279649 982.544745 0.2487 0.00012243 -0.31515 -0.00015514 -0.066451 -3.2712E-05 492.2795262590995 35.054 0.75925 38.727 38.392 39.151 3.6735 124 75 2 0 0 0 0.279 4 5712 5668;5712;5748;5785 15.248 5.8654 1 164010 6701 3831 4106 4111 8436;8437;8438;8439 8437 0.05277456443241135 EVSPPVTVR 9 Unmodified _EVSPPVTVR_ 0 0 0 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 ENSG00000159339|ENST00000375448|PADI4 MULTI-MSMS UPN48_class_I_Rep_3 7 492.2797546386719 2 492.279649 982.544745 0.14922 7.3459E-05 -0.4367 -0.00021498 -0.28748 -0.00014152 492.2794966623025 35.028 0.80386 38.7 38.358 39.162 3.6721 142 89 2 0 0 0 0.21414 6 5617 5565;5582;5617;5653;5691;5735 19.362 6.3195 1 171630 6702 3831 4106 4111 8440;8441;8442;8443;8444;8445 8442 0.05277456443241135 EVSVERFFF 9 Unmodified _EVSVERFFF_ 0 0 0 REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C MULTI-MSMS UPN48_class_I_Rep_1 5 580.2933959960938 2 580.292756 1158.57096 0.54059 0.0003137 0.11247 6.5263E-05 0.65305 0.00037896 580.2928185534843 63.11 0.70647 66.572 66.193 66.899 3.4625 83 47 2 0 0 0 0.43153 1 14248 14248 6.2058 0.47393 1 175450 + 6703 19447 4107 4112 8446 8446 -0.0019827438529773644 EVSVERFFF 9 Unmodified _EVSVERFFF_ 0 0 0 REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C MULTI-MSMS UPN48_class_I_Rep_2 6 580.2929077148438 2 580.292756 1158.57096 0.52562 0.00030501 0.17989 0.00010439 0.70551 0.0004094 580.2930212589845 62.986 0.73193 66.46 66.103 66.835 3.4738 90 54 2 0 0 0 0.36392 1 14144 14144 10.074 0.6908 1 202170 + 6704 19447 4107 4112 8447 8447 -0.0019827438529773644 EVSVHFFCLFF 11 Unmodified _EVSVHFFCLFF_ 0 0 0 L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|74|1|anti-sense L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|74|1|anti-sense L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|74|1|anti-sense MSMS UPN47_class_I_Rep_3 4 458.87615966796875 3 458.889886 1373.64783 NaN NaN NaN NaN NaN NaN NaN 15.249 1 18.615 18.115 19.115 3.3659 0 0 0 0.38417 1 742 742 0.50596 0 1 6705 12014 4108 4113 8448 8448 -0.024047991604902563 EVTMKKIHH 9 Unmodified _EVTMKKIHH_ 0 0 0 REV__ENSG00000111647|ENST00000279907|BLTP3B REV__ENSG00000111647|ENST00000279907|BLTP3B MULTI-SECPEP UPN48_class_I_Rep_3 7 561.3269653320312 2 561.808051 1121.60155 0.34377 0.00019313 1.0747 0.00060378 1.4185 0.00079691 561.8091126445025 44.535 0.07692 48.172 48.145 48.222 3.6372 6 4 2 0 0 0 0.12354 1 8434 8434 3.5965 1.019 1 50075 + 6706 18460 4109 4114 8449 8449 0.045611807281147776 EVTVAVLVL 9 Unmodified _EVTVAVLVL_ 0 0 0 REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|130|3|anti-sense REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|130|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.7970886230469 2 471.797143 941.579734 0.20903 9.8621E-05 -0.38429 -0.00018131 -0.17526 -8.2687E-05 471.79687130499764 69.537 0.98466 73.059 72.722 73.707 3.5216 160 82 3 0 0 0 0.40174 1 16176 16176 7.9102 0 1 524240 + 6707 17380 4110 4115 8450 8450 0.10660699251184269 EVTYLYNSN 9 Unmodified _EVTYLYNSN_ 0 0 0 L1MC1_dup11087|chr15:42254301-42254964:+|2.447779380665309|0.0510717553792088|5.58|151.0|11|2|sense L1MC1_dup11087|chr15:42254301-42254964:+|2.447779380665309|0.0510717553792088|5.58|151.0|11|2|sense L1MC1_dup11087|chr15:42254301-42254964:+|2.447779380665309|0.0510717553792088|5.58|151.0|11|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 552.2925415039062 2 551.756204 1101.49785 0.54152 0.00029879 0.65942 0.00036384 1.2009 0.00066263 551.7563774506244 68.653 0.45797 72.105 71.807 72.265 3.4517 64 38 2 0 0 0 0.10699 1 15839 15839 15.847 3.3156 1 105090 6708 11083 4111 4116 8451 8451 -0.0488344789855546 EVTYLYNSN 9 Unmodified _EVTYLYNSN_ 0 0 0 L1MC1_dup11087|chr15:42254301-42254964:+|2.447779380665309|0.0510717553792088|5.58|151.0|11|2|sense L1MC1_dup11087|chr15:42254301-42254964:+|2.447779380665309|0.0510717553792088|5.58|151.0|11|2|sense L1MC1_dup11087|chr15:42254301-42254964:+|2.447779380665309|0.0510717553792088|5.58|151.0|11|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 552.2924194335938 2 551.756204 1101.49785 0.49829 0.00027494 0.80124 0.00044209 1.2995 0.00071703 551.7565101856867 68.425 0.43678 71.933 71.802 72.239 3.5083 62 41 2 0 0 0 0.082517 1 15811 15811 25.399 7.2643 1 108900 6709 11083 4111 4116 8452 8452 -0.0488344789855546 EVVALRLKA 9 Unmodified _EVVALRLKA_ 0 0 0 REV__nc|ENSG00000179832|Q8NDA8-6|MROH1 REV__nc|ENSG00000179832|Q8NDA8-6|MROH1 MSMS UPN47_class_I_Rep_3 4 499.8212585449219 2 499.821484 997.628415 NaN NaN NaN NaN NaN NaN NaN 41.446 1 44.683 44.183 45.183 3.2372 0 0 0 0.39598 1 8407 8407 1.6526 0 1 + 6710 20688 4112 4117 8453 8453 0.12950612610927692 EVVDIFQVVK 10 Unmodified _EVVDIFQVVK_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN48_class_I_Rep_1 5 588.3380737304688 2 588.337164 1174.65977 NaN NaN NaN NaN NaN NaN NaN 69.204 1 72.659 72.159 73.159 3.4548 0 0 0 0.53105 1 16037 16037 23.79 15.634 1 6711 1214 4113 4118 8454 8454 0.07943140854376907 EVVDIFQVVK 10 Unmodified _EVVDIFQVVK_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN48_class_I_Rep_1 5 588.317626953125 2 588.337164 1174.65977 NaN NaN NaN NaN NaN NaN NaN 69.395 1 72.849 72.349 73.349 3.4548 0 0 0 0.53105 1 16096 16096 4.897 0.141 1 6712 1214 4113 4118 8455 8455 0.07943140854376907 EVVDIFQVVK 10 Unmodified _EVVDIFQVVK_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN48_class_I_Rep_2 6 588.3373413085938 2 588.337164 1174.65977 NaN NaN NaN NaN NaN NaN NaN 69.106 1 72.627 72.127 73.127 3.5216 0 0 0 0.53105 1 15986 15986 19.362 6.8304 1 6713 1214 4113 4118 8456 8456 0.07943140854376907 EVVDIFQVVK 10 Unmodified _EVVDIFQVVK_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN48_class_I_Rep_2 6 588.3370971679688 2 588.337164 1174.65977 NaN NaN NaN NaN NaN NaN NaN 69.126 1 72.648 72.148 73.148 3.5216 0 0 0 0.53105 1 15992 15992 11.495 0 1 6714 1214 4113 4118 8457 8457 0.07943140854376907 EVVDIFQVVK 10 Unmodified _EVVDIFQVVK_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN48_class_I_Rep_3 7 588.3366088867188 2 588.337164 1174.65977 NaN NaN NaN NaN NaN NaN NaN 68.914 1 72.424 71.924 72.924 3.5094 0 0 0 0.53105 1 15836 15836 7.609 2.7119 1 6715 1214 4113 4118 8458 8458 0.07943140854376907 EVVIYVVER 9 Unmodified _EVVIYVVER_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MULTI-MSMS UPN48_class_I_Rep_1 5 553.3176879882812 2 553.316232 1104.61791 0.50975 0.00028205 -1.0667 -0.00059023 -0.55696 -0.00030818 553.3162584648442 51.413 0.41518 54.938 54.743 55.158 3.5246 71 32 3 0 0 0 0.19092 1 10623 10623 21.59 6.3417 1 129960 6716 3108 4114 4119 8459 8459 0.06978585165848017 EVVIYVVER 9 Unmodified _EVVIYVVER_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MSMS UPN48_class_I_Rep_2 6 553.3158569335938 2 553.316232 1104.61791 NaN NaN NaN NaN NaN NaN NaN 51.447 1 55.115 54.615 55.615 3.6679 0 0 0 0.11743 1 10606 10606 21.59 6.3417 1 6717 3108 4114 4119 8460 8460 0.06978585165848017 EVVIYVVER 9 Unmodified _EVVIYVVER_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MULTI-MSMS UPN48_class_I_Rep_3 7 553.316650390625 2 553.316232 1104.61791 0.26355 0.00014583 0.2253 0.00012466 0.48885 0.00027049 553.3163305530304 51.377 0.31581 54.987 54.802 55.117 3.6105 36 21 2 0 0 0 0.19092 1 10520 10520 21.59 6.3417 1 156000 6718 3108 4114 4119 8461 8461 0.06978585165848017 EVVIYVVER 9 Unmodified _EVVIYVVER_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MULTI-MSMS UPN48_class_I_Rep_3 7 553.8181762695312 2 553.316232 1104.61791 0.26121 0.00014453 0.079408 4.3938E-05 0.34062 0.00018847 553.3160932490291 51.594 0.1804 55.205 55.09 55.271 3.6105 20 16 2 0 0 0 0.13455 2 10572 10572;10581 27.223 6.8087 1 266990 6719 3108 4114 4119 8462;8463 8462 0.06978585165848017 EVVIYVVER 9 Unmodified _EVVIYVVER_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000514313.1_1_4:77053589-77055413:-|nuORF nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MSMS UPN48_class_I_Rep_3 7 553.3173828125 2 553.316232 1104.61791 NaN NaN NaN NaN NaN NaN NaN 51.726 1 55.337 54.837 55.837 3.6105 0 0 0 0.31132 1 10626 10626 10.151 2.5416 1 6720 3108 4114 4119 8464 8464 0.06978585165848017 EVVKFPLFK 9 Unmodified _EVVKFPLFK_ 0 0 0 REV__ENSG00000044574|ENST00000324460|HSPA5 REV__ENSG00000044574|ENST00000324460|HSPA5 MSMS UPN46_class_I_Rep_3 1 553.8353271484375 2 553.83406 1105.65357 NaN NaN NaN NaN NaN NaN NaN 22.524 1 22.524 22.024 23.024 0 0 0 0 0.39598 1 2689 2689 1.6526 0 1 + 6721 17658 4115 4120 8465 8465 0.10496667413531213 EVVLFFIK 8 Unmodified _EVVLFFIK_ 0 0 0 REV__L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|86|1|anti-sense REV__L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|86|1|anti-sense MSMS UPN48_class_I_Rep_3 7 497.7995910644531 2 497.802229 993.589904 NaN NaN NaN NaN NaN NaN NaN 35.603 1 39.27 38.77 39.77 3.6667 0 0 0 0.39819 1 5795 5795 8.5933 0 1 + 6722 28393 4116 4121 8466 8466 0.09285306976414631 EVVLTREHH 9 Unmodified _EVVLTREHH_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|165|3|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|165|3|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|165|3|anti-sense MSMS UPN46_class_I_Rep_3 1 560.3009643554688 2 560.298904 1118.58326 NaN NaN NaN NaN NaN NaN NaN 34.459 1 34.459 33.959 34.959 0 0 0 0 0.38784 1 6155 6155 3.5965 0.31518 1 6723 15376 4117 4122 8467 8467 0.028707620777595366 EVVNPGAKKR 10 Unmodified _EVVNPGAKKR_ 0 0 0 ENST00000543086.7_1_12:1599405-1599519:+|nuORF ENST00000543086.7_1_12:1599405-1599519:+|nuORF ENST00000543086.7_1_12:1599405-1599519:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 548.82373046875 2 549.324922 1096.63529 0.31942 0.00017547 0.62202 0.00034169 0.94145 0.00051716 549.3251735154541 59.895 0.66312 59.895 59.831 60.494 0 140 81 2 0 0 0 0.84575 1 13267 13267 9.3831 0 1 2285100 6724 7361 4118 4123 8468 8468 0.0908392549151813 EVVPEPVAR 9 Unmodified _EVVPEPVAR_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS UPN48_class_I_Rep_1 5 498.27972412109375 2 498.279649 994.544745 0.22916 0.00011418 -0.15787 -7.8664E-05 0.071283 3.5519E-05 498.27958033549174 35.546 0.65276 39.057 38.768 39.421 3.5101 96 64 2 0 0 0 0.23293 4 5856 5816;5856;5901;5919 18.146 0 1 160570 6725 3721 4119 4124 8469;8470;8471;8472 8470 0.04725456443236453 EVVPEPVAR 9 Unmodified _EVVPEPVAR_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS UPN48_class_I_Rep_2 6 498.2802734375 2 498.279649 994.544745 0.26352 0.00013131 -0.3163 -0.0001576 -0.052771 -2.6295E-05 498.27943804025455 35.317 0.62383 38.99 38.785 39.409 3.6735 98 58 2 0 0 0 0.1249 4 5799 5764;5799;5837;5918 29.082 5.061 1 158140 6726 3721 4119 4124 8473;8474;8475;8476 8474 0.04725456443236453 EVVPEPVAR 9 Unmodified _EVVPEPVAR_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS UPN48_class_I_Rep_3 7 498.27947998046875 2 498.279649 994.544745 0.16116 8.0301E-05 -0.12756 -6.356E-05 0.033598 1.6741E-05 498.27952097583307 35.377 0.61085 39.049 38.774 39.384 3.6721 131 63 3 0 0 0 0.16559 2 5778 5740;5778 24.021 0 1 164330 6727 3721 4119 4124 8477;8478 8478 0.04725456443236453 EVVSGVVSK 9 Unmodified _EVVSGVVSK_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS UPN48_class_I_Rep_3 7 452.2604675292969 2 452.260925 902.507297 0.061847 2.7971E-05 -0.74983 -0.00033912 -0.68799 -0.00031115 452.2604214304168 26.667 0.56412 30.433 30.193 30.757 3.7663 97 68 2 0 0 0 0.41587 2 3389 3389;3425 7.1017 3.5052 1 75584 6728 4712 4120 4125 8479;8480 8479 0.05214365177619129 EVVSGVVSK 9 Unmodified _EVVSGVVSK_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MATCH UPN48_class_I_Rep_1 5 2 452.260925 902.507297 0.099242 4.4883E-05 -0.60431 -0.00027331 -0.50507 -0.00022842 452.26038072250685 26.789 0.4883 30.352 30.064 30.552 3.5629 -0.037716 0.00014934 NaN 7.1017 61 46 2 NaN NaN NaN NaN 0 NaN NaN 0 85335 6729 4712 4120 4125 0.05214365177619129 EVVSGVVSK 9 Unmodified _EVVSGVVSK_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MATCH UPN48_class_I_Rep_2 6 2 452.260925 902.507297 0.18998 8.5921E-05 -0.8667 -0.00039198 -0.67672 -0.00030606 452.2603444182289 26.753 0.49716 30.384 30.188 30.685 3.6311 -0.005797 -8.7995E-05 NaN 7.1017 78 59 2 NaN NaN NaN NaN 0 NaN NaN 0 77503 6730 4712 4120 4125 0.05214365177619129 EVVSLLLDR 9 Unmodified _EVVSLLLDR_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000188877|Q6S8J7-2|POTEA ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 522.308349609375 2 522.308406 1042.60226 0.43755 0.00022853 -0.22641 -0.00011826 0.21114 0.00011028 522.3081962005673 60.043 0.58734 63.523 63.276 63.863 3.4801 78 42 2 0 0 0 0.16799 2 13235 13235;13316 23.79 13.716 1 232980 6731 2756;2715;16786 4121 4126 8481;8482 8481 0.08266298648823067 EVVSLLLDR 9 Unmodified _EVVSLLLDR_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000188877|Q6S8J7-2|POTEA ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MULTI-MSMS UPN48_class_I_Rep_2 6 522.3084716796875 2 522.308406 1042.60226 0.45254 0.00023637 -0.49439 -0.00025822 -0.041843 -2.1855E-05 522.3080848980657 60.029 0.6725 63.516 63.194 63.867 3.4868 90 56 2 0 0 0 0.12795 1 13229 13229 28.495 14.588 1 252970 6732 2756;2715;16786 4121 4126 8483 8483 0.08266298648823067 EVVSLLLDR 9 Unmodified _EVVSLLLDR_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000188877|Q6S8J7-2|POTEA ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MULTI-MSMS UPN48_class_I_Rep_3 7 522.3082885742188 2 522.308406 1042.60226 0.38715 0.00020221 -0.39178 -0.00020463 -0.0046348 -2.4208E-06 522.308132265605 59.862 0.63731 63.379 63.089 63.726 3.5169 79 53 2 0 0 0 0.12795 2 13084 13084;13172 28.495 6.9575 1 269110 6733 2756;2715;16786 4121 4126 8484;8485 8484 0.08266298648823067 EVVTSHKPV 9 Unmodified _EVVTSHKPV_ 0 0 0 REV__ENSG00000196782|ENST00000509479|MAML3 REV__ENSG00000196782|ENST00000509479|MAML3 MULTI-MSMS UPN48_class_I_Rep_1 5 498.27947998046875 2 498.279649 994.544745 0.22916 0.00011418 -0.15787 -7.8664E-05 0.071283 3.5519E-05 498.27958033549174 35.546 0.65276 39.057 38.768 39.421 3.5101 96 64 2 0 0 0 0.31407 1 5898 5898 13.042 0 1 160570 + 6734 21054 4122 4127 8486 8486 0.04725456443236453 EVVTSHKPV 9 Unmodified _EVVTSHKPV_ 0 0 0 REV__ENSG00000196782|ENST00000509479|MAML3 REV__ENSG00000196782|ENST00000509479|MAML3 MULTI-MSMS UPN48_class_I_Rep_2 6 498.2796325683594 2 498.279649 994.544745 0.26352 0.00013131 -0.3163 -0.0001576 -0.052771 -2.6295E-05 498.27943804025455 35.317 0.62383 38.99 38.785 39.409 3.6735 98 58 2 0 0 0 0.31407 1 5876 5876 13.042 0 1 158140 + 6735 21054 4122 4127 8487 8487 0.04725456443236453 EVWKALLFL 9 Unmodified _EVWKALLFL_ 0 0 0 L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|124|3|anti-sense L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|124|3|anti-sense L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|124|3|anti-sense MSMS UPN46_class_I_Rep_3 1 559.833251953125 2 559.83406 1117.65357 NaN NaN NaN NaN NaN NaN NaN 76.735 1 76.735 76.235 77.235 0 0 0 0 0.39518 1 17918 17918 1.8442 0 1 6736 9545 4123 4128 8488 8488 0.09944667413492425 EVYDIAFSR 9 Unmodified _EVYDIAFSR_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS UPN48_class_I_Rep_1 5 550.2744750976562 2 550.274564 1098.53457 0.49462 0.00027218 0.23338 0.00012842 0.72801 0.0004006 550.2744235661519 51.998 0.65325 55.521 55.29 55.943 3.5227 128 68 3 0 0 0 0.0203 2 10779 10737;10779 63.227 37.828 1 428360 6737 2972 4124 4129 8489;8490 8490 -0.010751512820206699 EVYDIAFSR 9 Unmodified _EVYDIAFSR_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS UPN48_class_I_Rep_2 6 550.2750244140625 2 550.274564 1098.53457 0.51082 0.00028109 -0.11221 -6.1745E-05 0.39861 0.00021935 550.2744087890072 51.831 0.65741 55.47 55.314 55.971 3.639 116 71 2 0 0 0 0.05757 3 10685 10685;10721;10763 45.74 29.893 1 477270 6738 2972 4124 4129 8491;8492;8493 8491 -0.010751512820206699 EVYDIAFSR 9 Unmodified _EVYDIAFSR_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS UPN48_class_I_Rep_3 7 550.2755737304688 2 550.274564 1098.53457 0.28547 0.00015709 0.17868 9.8323E-05 0.46415 0.00025541 550.2745590518773 51.944 0.57767 55.542 55.339 55.917 3.5979 125 64 3 0 0 0 0.24411 1 10652 10652 17.443 10.153 1 432780 6739 2972 4124 4129 8494 8494 -0.010751512820206699 EVYPVGIFQK 10 Unmodified _EVYPVGIFQK_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376655.1_1_1:11737515-11751604:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 590.3240356445312 2 590.324057 1178.63356 0.5189 0.00030632 0.070764 4.1774E-05 0.58967 0.00034809 590.3240050578114 57.678 0.84254 61.172 60.826 61.668 3.4942 154 64 3 0 0 0 0.19978 6 12493 12456;12493;12533;12572;12629;12651 60.074 36.053 1 524770 6740 2195 4125 4130 8495;8496;8497;8498;8499;8500 8496 0.05138871682879653 EVYPVGIFQK 10 Unmodified _EVYPVGIFQK_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376655.1_1_1:11737515-11751604:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 590.3243408203125 2 590.324057 1178.63356 0.58332 0.00034434 0.1241 7.3258E-05 0.70741 0.0004176 590.3239525786469 57.652 0.77652 61.166 60.816 61.593 3.5142 129 57 3 0 0 0 0.19978 5 12507 12393;12433;12469;12507;12548 60.074 36.053 1 475420 6741 2195 4125 4130 8501;8502;8503;8504;8505 8504 0.05138871682879653 EVYPVGIFQK 10 Unmodified _EVYPVGIFQK_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376655.1_1_1:11737515-11751604:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 590.32421875 2 590.324057 1178.63356 0.43923 0.00025929 0.32502 0.00019187 0.76426 0.00045116 590.3240696352906 57.534 0.73436 61.066 60.698 61.432 3.5317 134 62 3 0 0 0 0.12513 6 12363 12289;12327;12363;12403;12444;12485 72.968 48.947 1 447180 6742 2195 4125 4130 8506;8507;8508;8509;8510;8511 8508 0.05138871682879653 EVYPVGIFQK 10 Unmodified _EVYPVGIFQK_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376655.1_1_1:11737515-11751604:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 590.3245849609375 2 590.324057 1178.63356 0.4492 0.00026517 -0.75749 -0.00044717 -0.30829 -0.00018199 590.3240018125335 57.994 0.092304 61.526 61.466 61.559 3.5317 5 4 2 0 0 0 0.56333 1 12530 12530 1.4819 0.8804 1 42462 6743 2195 4125 4130 8512 8512 0.05138871682879653 EVYVKFYN 8 Unmodified _EVYVKFYN_ 0 0 0 REV__L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|49|1|sense REV__L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|49|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 530.787353515625 2 531.26875 1060.52295 0.21886 0.00011627 -0.79925 -0.00042462 -0.58039 -0.00030834 531.2682883559726 50.507 0.78477 54.135 53.803 54.588 3.6285 54 35 2 0 0 0 0.72333 1 11053 11053 21.747 6.9084 1 123400 + 6744 29649 4126 4131 8513 8513 -0.004893483053365344 EWADDRRHL 9 Unmodified _EWADDRRHL_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;ENST00000564307.5_1_16:72132668-72133652:+|nuORF ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MSMS UPN47_class_I_Rep_3 4 599.292724609375 2 599.291611 1196.56867 NaN NaN NaN NaN NaN NaN NaN 78.211 1 81.493 80.993 81.993 3.2816 0 0 0 0.39598 1 19497 19497 1.6526 0.17072 1 6745 3192 4127 4132 8514 8514 -0.02175310070379055 EWAKISCQRH 10 Unmodified _EWAKISCQRH_ 0 0 0 L1PA14_dup1462|chr7:92757152-92759013:-|3.958898762229401|0.0396687401655551|6.64|151.0|28|2|sense L1PA14_dup1462|chr7:92757152-92759013:-|3.958898762229401|0.0396687401655551|6.64|151.0|28|2|sense L1PA14_dup1462|chr7:92757152-92759013:-|3.958898762229401|0.0396687401655551|6.64|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 629.8131103515625 2 629.311489 1256.60842 0.3867 0.00024336 -1.7229 -0.0010843 -1.3362 -0.0008409 629.3097139371524 60.928 0.12012 64.094 64.07 64.19 3.1651 13 10 2 0 0 0 0.56078 1 14349 14349 3.2813 0.28607 1 247620 6746 13820 4128 4133 8515 8515 -0.009615063913088306 EWCSLFVF 8 Unmodified _EWCSLFVF_ 0 0 0 REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|75|3|anti-sense REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_1 2 515.7372436523438 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 28.569 1 32.336 31.836 32.836 3.7662 0 0 0 0.40738 1 4419 4419 0.79363 0 1 + 6747 28761 4129 4134 8516 8516 -0.050563622402250985 EWDVGEFF 8 Unmodified _EWDVGEFF_ 0 0 0 REV__ENSG00000112079|ENST00000229812|STK38 REV__ENSG00000112079|ENST00000229812|STK38 MSMS UPN47_class_I_Rep_2 3 514.722900390625 2 514.721633 1027.42871 NaN NaN NaN NaN NaN NaN NaN 64.036 1 67.292 66.792 67.792 3.2556 0 0 0 0.40404 1 15228 15228 5.2307 4.437 1 + 6748 18474 4130 4135 8517 8517 -0.08390487127485358 EWEEKRRQREK 11 Unmodified _EWEEKRRQREK_ 0 0 0 REV__ENSG00000158545|ENST00000301011|ZC3H18 REV__ENSG00000158545|ENST00000301011|ZC3H18 MSMS UPN47_class_I_Rep_3 4 525.278076171875 3 525.277972 1572.81209 NaN NaN NaN NaN NaN NaN NaN 26.849 1 30.191 29.691 30.691 3.3422 0 0 0 0.38417 1 3990 3990 0.094841 0 1 + 6749 19846 4131 4136 8518 8518 0.04859309583821414 EWEGPPPR 8 Unmodified _EWEGPPPR_ 0 0 0 REV__ENST00000378895.8_1_17:27228620-27229882:-|nuORF REV__ENST00000378895.8_1_17:27228620-27229882:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 484.9251403808594 2 484.235242 966.45593 0.27841 0.00013482 1.7134 0.00082971 1.9918 0.00096452 484.2359425526802 87.047 0.077988 87.047 87.011 87.089 0 15 9 3 0 0 0 0.82752 1 20835 20835 4.756 2.4533 1 73489 + 6750 22033 4132 4137 8519 8519 -0.028639587964335078 EWEGPPPR 8 Unmodified _EWEGPPPR_ 0 0 0 REV__ENST00000378895.8_1_17:27228620-27229882:-|nuORF REV__ENST00000378895.8_1_17:27228620-27229882:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 484.235242 966.45593 0.27841 0.00013482 1.7134 0.00082971 1.9918 0.00096452 484.2359425526802 87.047 0.077988 87.047 87.011 87.089 0 0 0 NaN 4.756 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 73489 + 6751 22033 4132 4137 -0.028639587964335078 EWEKTVSLWQL 11 Unmodified _EWEKTVSLWQL_ 0 0 0 REV__Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|37|2|anti-sense REV__Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|37|2|anti-sense MSMS UPN46_class_I_Rep_3 1 473.4620361328125 3 473.581998 1417.72417 NaN NaN NaN NaN NaN NaN NaN 45.502 1 45.502 45.002 46.002 0 0 0 0 0.38417 1 9258 9258 0.45452 0 1 + 6752 32731 4133 4138 8520 8520 0.03201295940516502 EWELGWEW 8 Unmodified _EWELGWEW_ 0 0 0 REV__L1ME3_dup1743|chr3:45669424-45669929:-|1.6049620194654548|0.1193424279194598|3.75|151.0|5|1|sense REV__L1ME3_dup1743|chr3:45669424-45669929:-|1.6049620194654548|0.1193424279194598|3.75|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 567.7493286132812 2 567.748182 1133.48181 NaN NaN NaN NaN NaN NaN NaN 111.92 1 115.49 114.99 115.99 3.572 0 0 0 0.40604 1 27611 27611 2.5775 0 1 + 6753 27942 4134 4139 8521 8521 -0.07959109344824356 EWELGWEW 8 Unmodified _EWELGWEW_ 0 0 0 REV__L1ME3_dup1743|chr3:45669424-45669929:-|1.6049620194654548|0.1193424279194598|3.75|151.0|5|1|sense REV__L1ME3_dup1743|chr3:45669424-45669929:-|1.6049620194654548|0.1193424279194598|3.75|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 567.7504272460938 2 567.748182 1133.48181 NaN NaN NaN NaN NaN NaN NaN 20.226 1 23.623 23.123 24.123 3.3963 0 0 0 0.40604 1 2058 2058 2.5775 0.51773 1 + 6754 27942 4134 4139 8522 8522 -0.07959109344824356 EWEPAWMFL 9 Unmodified _EWEPAWMFL_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MSMS UPN48_class_I_Rep_1 5 604.7756958007812 2 604.775885 1207.53722 NaN NaN NaN NaN NaN NaN NaN 29.086 1 32.636 32.136 33.136 3.5499 0 0 0 0.39428 1 3991 3991 2.0598 0.21551 1 6755 16755 4135 4140 8523 8523 -0.058250191486877156 EWFTLCCLL 9 Unmodified _EWFTLCCLL_ 0 0 0 REV__ENST00000444527.2_1_8:56367247-56367565:-|nuORF REV__ENST00000444527.2_1_8:56367247-56367565:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 564.26611328125 2 564.266838 1126.51912 0.092423 5.2151E-05 -0.84515 -0.00047689 -0.75273 -0.00042474 564.2662092315799 42.53 0.62754 45.891 45.53 46.158 3.3611 57 44 2 0 0 0 0.40174 1 8624 8624 7.9102 1.5561 1 79215 + 6756 22350 4136 4141 8524 8524 -0.03907477395046044 EWFTLCCLL 9 Unmodified _EWFTLCCLL_ 0 0 0 REV__ENST00000444527.2_1_8:56367247-56367565:-|nuORF REV__ENST00000444527.2_1_8:56367247-56367565:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 564.266838 1126.51912 0.094903 5.3551E-05 -0.37243 -0.00021015 -0.27753 -0.0001566 564.2663831763404 42.625 0.62082 45.864 45.57 46.191 3.2394 0.0010865 0.00024955 NaN 7.9102 62 40 2 NaN NaN NaN NaN 0 NaN NaN 0 115380 + 6757 22350 4136 4141 -0.03907477395046044 EWFWDKQIK 9 Unmodified _EWFWDKQIK_ 0 0 0 REV__MER21B_dup115|chr1:150373919-150374737:+|1.556507307890754|0.0216364687293094|6.17|151.0|18|2|sense REV__MER21B_dup115|chr1:150373919-150374737:+|1.556507307890754|0.0216364687293094|6.17|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 640.3287353515625 2 640.327131 1278.63971 NaN NaN NaN NaN NaN NaN NaN 82.195 1 85.594 85.094 86.094 3.3984 0 0 0 0.39428 1 20487 20487 2.0598 0.40713 1 + 6758 31190 4137 4142 8525 8525 0.011533899144069437 EWGPSHSKAN 10 Unmodified _EWGPSHSKAN_ 0 0 0 HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|209|1|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|209|1|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|209|1|anti-sense MSMS UPN47_class_I_Rep_3 4 556.7589111328125 2 556.759612 1111.50467 NaN NaN NaN NaN NaN NaN NaN 22.566 1 25.916 25.416 26.416 3.3503 0 0 0 0.53105 1 2722 2722 3.2813 0.28607 1 6759 8206 4138 4143 8526 8526 -0.04662090227338922 EWGWWKKW 8 Unmodified _EWGWWKKW_ 0 0 0 REV__L1MC4_dup9799|chr6:149530675-149531079:+|1.208215524892102|0.0350237962479793|5.11|151.0|12|3|sense REV__L1MC4_dup9799|chr6:149530675-149531079:+|1.208215524892102|0.0350237962479793|5.11|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 603.2996826171875 2 603.298176 1204.5818 NaN NaN NaN NaN NaN NaN NaN 94.927 1 98.399 97.899 98.899 3.472 0 0 0 0.40746 1 23381 23381 0.69038 0.088878 1 + 6760 26960 4139 4144 8527 8527 -0.012308272203654269 EWIKNWEK 8 Unmodified _EWIKNWEK_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MSMS UPN47_class_I_Rep_3 4 566.7946166992188 2 566.792924 1131.57129 NaN NaN NaN NaN NaN NaN NaN 48.295 1 51.536 51.036 52.036 3.2405 0 0 0 0.40659 1 10487 10487 1.8442 0.19162 1 6761 2509 4140 4145 8528 8528 0.010771453345341797 EWLFDDILF 9 Unmodified _EWLFDDILF_ 0 0 0 REV__Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|54|1|anti-sense REV__Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_3 7 599.292724609375 2 599.294965 1196.57538 NaN NaN NaN NaN NaN NaN NaN 72.493 1 76.03 75.53 76.53 3.5373 0 0 0 0.36505 1 16901 16901 7.2892 0.56607 1 + 6762 32644 4141 4146 8529 8529 -0.015048099623982125 EWLFVASYY 9 Unmodified _EWLFVASYY_ 0 0 0 ENSG00000168412|ENST00000307161|MTNR1A ENSG00000168412|ENST00000307161|MTNR1A ENSG00000168412|ENST00000307161|MTNR1A MSMS UPN47_class_I_Rep_3 4 589.2809448242188 2 589.281857 1176.54916 NaN NaN NaN NaN NaN NaN NaN 52.154 1 55.359 54.859 55.859 3.2055 0 0 0 0.35339 1 11667 11667 7.9102 1.187 1 6763 4369 4142 4147 8530 8530 -0.032050791338633644 EWLWGGVVW 9 Unmodified _EWLWGGVVW_ 0 0 0 REV__MER1B_dup831|chr2:233128011-233128323:+|1.0661498784360677|0.0044726223159318|7.9|151.0|19|3|anti-sense REV__MER1B_dup831|chr2:233128011-233128323:+|1.0661498784360677|0.0044726223159318|7.9|151.0|19|3|anti-sense MSMS UPN46_class_I_Rep_3 1 566.2840576171875 2 566.284734 1130.55492 NaN NaN NaN NaN NaN NaN NaN 33.532 1 33.532 33.032 34.032 0 0 0 0 0.39326 1 5877 5877 2.3027 0.4585 1 + 6764 31140 4143 4148 8531 8531 -0.005139358315091158 EWLWVELF 8 Unmodified _EWLWVELF_ 0 0 0 REV__nc|ENSG00000017260|P98194-8|ATP2C1 REV__nc|ENSG00000017260|P98194-8|ATP2C1 MSMS UPN48_class_I_Rep_1 5 561.2839965820312 2 561.286943 1120.55933 NaN NaN NaN NaN NaN NaN NaN 55.251 1 58.76 58.26 59.26 3.5082 0 0 0 0.40604 1 11775 11775 2.5775 0.51773 1 + 6765 31932 4144 4149 8532 8532 0.003875285913636617 EWMDTLVH 8 Unmodified _EWMDTLVH_ 0 0 0 REV__L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|17|3|sense REV__L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.2384033203125 2 515.73676 1029.45897 0.3439 0.00017736 0.61118 0.00031521 0.95508 0.00049257 516.2381397154285 114.91 0.094749 118.39 118.3 118.39 3.4802 9 8 2 0 0 0 0.82752 1 28226 28226 0.79363 0 1 21153 + 6766 25345 4145 4150 8533 8533 -0.054584517339208105 EWMDTLVH 8 Unmodified _EWMDTLVH_ 0 0 0 REV__L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|17|3|sense REV__L1MA4A_dup83|chr1:44574870-44575477:-|3.747530761703481|0.0015814480657848|11.21|149.0|17|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 515.73676 1029.45897 0.27995 0.00014438 0.17506 9.0286E-05 0.45501 0.00023467 515.7374306183817 114.7 0.10117 118.2 118.16 118.26 3.5038 -0.093346 -0.00025335 NaN 0.79363 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 31332 + 6767 25345 4145 4150 -0.054584517339208105 EWPDWCAL 8 Unmodified _EWPDWCAL_ 0 0 0 REV__L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|94|2|anti-sense REV__L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|94|2|anti-sense MSMS UPN48_class_I_Rep_3 7 510.21728515625 2 510.218203 1018.42185 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.17 116.67 117.67 3.6568 0 0 0 0.40738 1 26994 26994 0.79363 0 1 + 6768 30230 4146 4151 8534 8534 -0.08662123279702882 EWQEWAFL 8 Unmodified _EWQEWAFL_ 0 0 0 L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|198|1|anti-sense L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|198|1|anti-sense L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|198|1|anti-sense MSMS UPN48_class_I_Rep_1 5 554.758544921875 2 554.758549 1107.50255 NaN NaN NaN NaN NaN NaN NaN 116.48 1 120.1 119.6 120.6 3.6254 0 0 0 0.40738 1 28365 28365 0.79363 0 1 6769 15055 4147 4152 8535 8535 -0.04690518965162482 EWQMRFDC 8 Unmodified _EWQMRFDC_ 0 0 0 nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B nc|ENSG00000133454|Q8IUG5-2|MYO18B nc|ENSG00000133454|Q8IUG5-2|MYO18B MSMS UPN47_class_I_Rep_1 2 557.7257080078125 2 557.725869 1113.43719 NaN NaN NaN NaN NaN NaN NaN 24.721 1 28.471 27.971 28.971 3.7495 0 0 0 0.40625 1 3279 3279 2.3027 0 1 6770 2804 4148 4153 8536 8536 -0.11499579754149636 EWQMRFDC 8 Unmodified _EWQMRFDC_ 0 0 0 nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B nc|ENSG00000133454|Q8IUG5-2|MYO18B nc|ENSG00000133454|Q8IUG5-2|MYO18B MSMS UPN47_class_I_Rep_3 4 557.7274780273438 2 557.725869 1113.43719 NaN NaN NaN NaN NaN NaN NaN 112.13 1 115.65 115.15 116.15 3.5207 0 0 0 0.39996 1 27535 27535 7.9102 0.62092 1 6771 2804 4148 4153 8537 8537 -0.11499579754149636 EWQRWVDI 8 Unmodified _EWQRWVDI_ 0 0 0 L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|29|1|anti-sense L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|29|1|anti-sense L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|29|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 566.2818603515625 2 566.282723 1130.55089 0.41776 0.00023657 -0.13221 -7.4867E-05 0.28555 0.0001617 566.2824548028311 49.719 1.3597 53.243 52.465 53.825 3.5246 189 91 3 0 0 0 0.82752 1 9879 9879 3.9444 0.3479 1 455560 6772 10244 4149 4154 8538 8538 -0.009160253252503026 EWQWSRRYLI 10 Unmodified _EWQWSRRYLI_ 0 0 0 REV__ENST00000321680.10_1_6:147527107-147527200:+|nuORF REV__ENST00000321680.10_1_6:147527107-147527200:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 478.9747619628906 3 479.585966 1435.73607 0.22057 0.00010578 -1.1843 -0.00056797 -0.96372 -0.00046219 479.58533798282906 102.74 0.39005 106.51 106.39 106.78 3.776 77 53 2 0 0 0 0.84575 1 24254 24254 0.69767 0.24315 1 283010 + 6773 21741 4150 4155 8539 8539 0.03562957474377981 EWRLFHWM 8 Unmodified _EWRLFHWM_ 0 0 0 L1MEc_dup18253|chr22:40059329-40059806:-|1.1456462185762668|0.0091798542530033|6.96|151.0|35|3|anti-sense L1MEc_dup18253|chr22:40059329-40059806:-|1.1456462185762668|0.0091798542530033|6.96|151.0|35|3|anti-sense L1MEc_dup18253|chr22:40059329-40059806:-|1.1456462185762668|0.0091798542530033|6.96|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 602.7918090820312 2 602.789661 1203.56477 NaN NaN NaN NaN NaN NaN NaN 66.906 1 66.906 66.406 67.406 0 0 0 0 0.40625 1 15204 15204 2.3027 0.4585 1 6774 13068 4151 4156 8540 8540 -0.028870710978253555 EWRPEQYR 8 Unmodified _EWRPEQYR_ 0 0 0 REV__nc|ENSG00000154429|Q6IQ19-3|CCSAP REV__nc|ENSG00000154429|Q6IQ19-3|CCSAP MSMS UPN46_class_I_Rep_3 1 582.2847290039062 2 582.283254 1162.55196 NaN NaN NaN NaN NaN NaN NaN 35.841 1 35.841 35.341 36.341 0 0 0 0 0.40643 1 6573 6573 2.0598 0.40713 1 + 6775 19738 4152 4157 8541 8541 -0.022818109563331745 EWRQKSLY 8 Unmodified _EWRQKSLY_ 0 0 0 REV__nc|ENSG00000050628|P43115-3|PTGER3 REV__nc|ENSG00000050628|P43115-3|PTGER3 MSMS UPN48_class_I_Rep_3 7 555.2694702148438 2 555.290548 1108.56654 NaN NaN NaN NaN NaN NaN NaN 75.07 1 78.636 78.136 79.136 3.5659 0 0 0 0.40659 1 17614 17614 1.8442 0 1 + 6776 17679 4153 4158 8542 8542 0.016602611918187904 EWRRWRKWELS 11 Unmodified _EWRRWRKWELS_ 0 0 0 REV__Tigger2_dup2171|chr13:50051869-50053333:+|4.692127781523356|0.2043976207305958|4.52|151.0|78|3|anti-sense REV__Tigger2_dup2171|chr13:50051869-50053333:+|4.692127781523356|0.2043976207305958|4.52|151.0|78|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.25439453125 3 544.623303 1630.84808 0.32551 0.00017728 1.1381 0.00061984 1.4636 0.00079712 544.6238115777373 58.651 0.33224 61.817 61.637 61.969 3.1658 26 21 2 0 0 0 22.551 1 13605 13605 0.40827 0.40827 1 137690 + 6777 32647 4154 4159 8543 8543 0.05788811551383333 EWRSQCLLHH 10 Unmodified _EWRSQCLLHH_ 0 0 0 REV__L1PA6_dup5507|chr18:13082458-13084761:-|1.8799553028741969|0.0647193980290466|4.86|151.0|93|1|anti-sense REV__L1PA6_dup5507|chr18:13082458-13084761:-|1.8799553028741969|0.0647193980290466|4.86|151.0|93|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.87933349609375 3 436.880384 1307.61932 NaN NaN NaN NaN NaN NaN NaN 76.227 1 79.726 79.226 80.226 3.4996 0 0 0 0.53105 1 18099 18099 0.77653 0.27058 1 + 6778 29940 4155 4160 8544 8544 -0.022181040170380584 EWRWGERED 9 Unmodified _EWRWGERED_ 0 0 0 L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|140|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|140|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|140|3|sense MSMS UPN48_class_I_Rep_3 7 631.7821044921875 2 631.781076 1261.5476 NaN NaN NaN NaN NaN NaN NaN 30.039 1 33.768 33.268 34.268 3.7286 0 0 0 0.39518 1 4285 4285 1.8442 0 1 6779 13998 4156 4161 8545 8545 -0.07271320169911633 EWSHYNEN 8 Unmodified _EWSHYNEN_ 0 0 0 nc|ENSG00000162620|A6PVS8-3|LRRIQ3;nc|ENSG00000162620|A6PVS8-2|LRRIQ3;ENSG00000162620|ENST00000354431|LRRIQ3 nc|ENSG00000162620|A6PVS8-3|LRRIQ3 nc|ENSG00000162620|A6PVS8-3|LRRIQ3 MSMS UPN46_class_I_Rep_3 1 539.7161865234375 2 539.71487 1077.41519 NaN NaN NaN NaN NaN NaN NaN 117.68 1 117.68 117.18 118.18 0 0 0 0 0.40643 1 29180 29180 2.0598 0.57785 1 6780 3946 4157 4162 8546 8546 -0.12042344906717517 EWSKFMKR 8 Unmodified _EWSKFMKR_ 0 0 0 REV__Charlie1a_dup221|chr1:89682476-89683362:+|1.2608226123660349|0.0437269196880224|4.85|150.0|37|1|anti-sense REV__Charlie1a_dup221|chr1:89682476-89683362:+|1.2608226123660349|0.0437269196880224|4.85|150.0|37|1|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2886962890625 2 556.289494 1110.56443 NaN NaN NaN NaN NaN NaN NaN 79.08 1 82.375 81.875 82.875 3.295 0 0 0 0.40746 1 19746 19746 0.69038 0.088878 1 + 6781 17307 4158 4163 8547 8547 0.013575091823440744 EWVAPVLGP 9 Unmodified _EWVAPVLGP_ 0 0 0 REV__L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|43|2|sense REV__L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 484.2635498046875 2 484.26601 966.517468 NaN NaN NaN NaN NaN NaN NaN 40.091 1 43.462 42.962 43.962 3.3712 0 0 0 0.36505 1 7944 7944 7.2892 1.0834 1 + 6782 29246 4159 4164 8548 8548 0.03286972902844809 EWVELATRTA 10 Unmodified _EWVELATRTA_ 0 0 0 HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|73|1|anti-sense HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|73|1|anti-sense HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|73|1|anti-sense MSMS UPN48_class_I_Rep_2 6 588.2870483398438 2 588.306395 1174.59824 NaN NaN NaN NaN NaN NaN NaN 46.688 1 50.437 49.937 50.937 3.7494 0 0 0 0.53105 1 9152 9152 3.2813 0.78282 1 6783 8333 4160 4165 8549 8549 0.017922091551099584 EWVYYHES 8 Unmodified _EWVYYHES_ 0 0 0 MSTD_dup5627|chr12:9672003-9672361:-|2.475695317800645|0.1179403459015634|4.39|151.0|11|3|sense MSTD_dup5627|chr12:9672003-9672361:-|2.475695317800645|0.1179403459015634|4.39|151.0|11|3|sense MSTD_dup5627|chr12:9672003-9672361:-|2.475695317800645|0.1179403459015634|4.39|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.2401733398438 2 556.737814 1111.46108 -0.026442 -1.4721E-05 -0.19019 -0.00010589 -0.21664 -0.00012061 556.7376738287215 40.299 0.7969 43.537 43.212 44.009 3.2372 80 50 2 0 0 0 0.82752 1 8050 8050 5.2307 0 1 66886 6784 16600 4161 4166 8550 8550 -0.090196997244675 EWYCVGFLL 9 Unmodified _EWYCVGFLL_ 0 0 0 L1PA5_dup5965|chr8:129905952-129907600:+|2.4586232740981364|0.0461882190416326|5.73|151.0|60|1|anti-sense;L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|88|3|anti-sense;L1MB4_dup3449|chr7:75450364-75451884:+|2.071617301683661|0.2986339002213939|2.79|151.0|89|3|anti-sense L1PA5_dup5965|chr8:129905952-129907600:+|2.4586232740981364|0.0461882190416326|5.73|151.0|60|1|anti-sense L1PA5_dup5965|chr8:129905952-129907600:+|2.4586232740981364|0.0461882190416326|5.73|151.0|60|1|anti-sense MSMS UPN46_class_I_Rep_3 1 565.2732543945312 2 565.272978 1128.5314 NaN NaN NaN NaN NaN NaN NaN 102.32 1 102.32 101.82 102.82 0 0 0 0 0.40038 1 24969 24969 0.6015 0 1 6785 10506 4162 4167 8551 8551 -0.027721176603563435 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS UPN48_class_I_Rep_1 5 568.2875366210938 2 568.28714 1134.55973 0.43761 0.00024869 -0.13755 -7.8166E-05 0.30006 0.00017052 568.2869151883688 53.805 0.79462 57.319 56.979 57.774 3.5143 118 58 3 0 0 0 0.081756 6 11345 11278;11294;11304;11345;11390;11435 38.176 17.722 1 278940 6786 1295;7467 4163 4168 8552;8553;8554;8555;8556;8557 8555 -0.0021709647940042487 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS UPN48_class_I_Rep_2 6 568.2874145507812 2 568.28714 1134.55973 0.56532 0.00032126 -0.69684 -0.000396 -0.13152 -7.4742E-05 568.2865166276259 53.766 0.89381 57.375 56.841 57.735 3.6098 100 64 2 0 0 0 0.043452 4 11311 11270;11311;11351;11366 51.63 13.656 1 316100 6787 1295;7467 4163 4168 8558;8559;8560;8561 8559 -0.0021709647940042487 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS UPN48_class_I_Rep_3 7 568.287109375 2 568.28714 1134.55973 0.30495 0.0001733 0.11816 6.7152E-05 0.42312 0.00024045 568.2870128119081 53.814 0.78959 57.398 57.041 57.83 3.5836 118 56 3 0 0 0 0.062142 6 11237 11188;11198;11237;11277;11318;11326 43.772 13.136 1 279820 6788 1295;7467 4163 4168 8562;8563;8564;8565;8566;8567 8564 -0.0021709647940042487 EYAKTFGYTF 10 Unmodified _EYAKTFGYTF_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MSMS UPN48_class_I_Rep_2 6 613.791259765625 2 613.790047 1225.56554 0.59877 0.00036752 0.11948 7.3338E-05 0.71826 0.00044086 614.2917632642655 56.905 0.37394 60.439 60.267 60.641 3.5333 52 34 2 0 0 0 0.38974 1 12286 12286 20.415 6.5085 1 74738 6789 4262 4164 4169 8568 8568 -0.03821997967770585 EYAKTFGYTF 10 Unmodified _EYAKTFGYTF_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MSMS UPN48_class_I_Rep_3 7 613.7905883789062 2 613.790047 1225.56554 NaN NaN NaN NaN NaN NaN NaN 56.81 1 60.353 59.853 60.853 3.5427 0 0 0 0.53105 1 12168 12168 8.1555 2.4237 1 6790 4262 4164 4169 8569 8569 -0.03821997967770585 EYAMISTSS 9 Unmodified _EYAMISTSS_ 0 0 0 ENST00000438215.1_1_20:33173256-33203893:-|nuORF ENST00000438215.1_1_20:33173256-33203893:-|nuORF ENST00000438215.1_1_20:33173256-33203893:-|nuORF MSMS UPN47_class_I_Rep_3 4 494.7185974121094 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 24.956 1 28.307 27.807 28.807 3.3509 0 0 0 0.39428 1 3432 3432 2.0598 1.2661 1 6791 6762 4165 4170 8570 8570 -0.07230168070339005 EYASELNYI 9 Unmodified _EYASELNYI_ 0 0 0 REV__ENSG00000099338|ENST00000409235|CATSPERG REV__ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS UPN48_class_I_Rep_1 5 551.2592163085938 2 551.258579 1100.50261 0.50892 0.00028055 0.29938 0.00016504 0.8083 0.00044558 551.2586020368796 40.713 0.24562 44.219 44.153 44.399 3.506 35 25 2 0 0 0 0.45441 1 7335 7335 4.897 1.3005 1 87487 + 6792 18067 4166 4171 8571 8571 -0.043625637557852315 EYCCTTFCMD 10 Unmodified _EYCCTTFCMD_ 0 0 0 L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|76|1|anti-sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|76|1|anti-sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|76|1|anti-sense MSMS UPN47_class_I_Rep_1 2 405.7988586425781 3 405.799023 1214.37524 NaN NaN NaN NaN NaN NaN NaN 54.778 1 58.279 57.779 58.779 3.5014 0 0 0 0.53105 1 12382 12382 0.15932 0 1 6793 12387 4167 4172 8572 8572 -0.22337435279837337 EYCRKKDY 8 Unmodified _EYCRKKDY_ 0 0 0 REV__L1ME3B_dup4970|chr10:48360223-48360883:+|1.7470811351685882|0.0369014499051823|5.57|151.0|30|1|anti-sense REV__L1ME3B_dup4970|chr10:48360223-48360883:+|1.7470811351685882|0.0369014499051823|5.57|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_1 2 552.7020874023438 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 116.34 1 119.94 119.44 120.44 3.6036 0 0 0 0.40625 1 28806 28806 2.3027 1.5091 1 + 6794 28062 4168 4173 8573 8573 -0.04063377813895386 EYCYYQYC 8 Unmodified _EYCYYQYC_ 0 0 0 REV__L1ME3E_dup2945|chr10:26761663-26761953:-|1.2210420549269487|0.1719662956415813|2.83|151.0|14|1|anti-sense REV__L1ME3E_dup2945|chr10:26761663-26761953:-|1.2210420549269487|0.1719662956415813|2.83|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 567.6990966796875 2 567.698986 1133.38342 NaN NaN NaN NaN NaN NaN NaN 117.6 1 121.2 120.7 121.7 3.6036 0 0 0 0.40746 1 29159 29159 0.69038 0 1 + 6795 28160 4169 4174 8574 8574 -0.177937969765253 EYDEDYIVY 9 Unmodified _EYDEDYIVY_ 0 0 0 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MULTI-MSMS UPN47_class_I_Rep_1 2 604.7518920898438 2 604.753327 1207.4921 0.36547 0.00022102 -1.5778 -0.0009542 -1.2124 -0.00073317 604.7525093165523 55.155 0.5088 58.648 58.408 58.916 3.4929 49 30 2 0 0 0 0.25207 3 12482 12482;12523;12547 16.942 2.104 1 124860 + 6796 20077 4170 4175 8575;8576;8577 8575 -0.10334591200899013 EYDIYSHW 8 Unmodified _EYDIYSHW_ 0 0 0 REV__ENSG00000086300|ENST00000338523|SNX10 REV__ENSG00000086300|ENST00000338523|SNX10 MULTI-MSMS UPN47_class_I_Rep_1 2 556.738037109375 2 556.737814 1111.46108 -0.0097911 -5.4511E-06 -0.083033 -4.6227E-05 -0.092824 -5.1678E-05 556.7378021770184 39.702 0.74517 43.369 43.134 43.879 3.6668 85 55 2 0 0 0 0.82752 1 7883 7883 5.2307 0.33366 1 96502 + 6797 17967 4171 4176 8578 8578 -0.09019699724444763 EYDIYSHW 8 Unmodified _EYDIYSHW_ 0 0 0 REV__ENSG00000086300|ENST00000338523|SNX10 REV__ENSG00000086300|ENST00000338523|SNX10 MULTI-MSMS UPN47_class_I_Rep_2 3 556.7379150390625 2 556.737814 1111.46108 0.045028 2.5069E-05 -0.24936 -0.00013883 -0.20433 -0.00011376 556.7375876665803 40.14 0.63594 43.511 43.186 43.822 3.3712 63 42 2 0 0 0 0.82752 2 7936 7936;7979 9.3474 1.4373 1 95519 + 6798 17967 4171 4176 8579;8580 8579 -0.09019699724444763 EYDIYSHW 8 Unmodified _EYDIYSHW_ 0 0 0 REV__ENSG00000086300|ENST00000338523|SNX10 REV__ENSG00000086300|ENST00000338523|SNX10 MULTI-MSMS UPN47_class_I_Rep_3 4 556.7379150390625 2 556.737814 1111.46108 -0.026442 -1.4721E-05 -0.19019 -0.00010589 -0.21664 -0.00012061 556.7376738287215 40.299 0.7969 43.537 43.212 44.009 3.2372 80 50 2 0 0 0 0.82752 3 7983 7983;8072;8111 5.2307 0.47466 1 66886 + 6799 17967 4171 4176 8581;8582;8583 8581 -0.09019699724444763 EYDLPKIL 8 Unmodified _EYDLPKIL_ 0 0 0 REV__ENSG00000197410|ENST00000357232|DCHS2 REV__ENSG00000197410|ENST00000357232|DCHS2 MSMS UPN47_class_I_Rep_1 2 495.7799987792969 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 83.109 1 86.648 86.148 87.148 3.5386 0 0 0 0.40157 1 20778 20778 7.2892 0 1 + 6800 21081 4172 4177 8584 8584 0.04815822354487409 EYEERDFI 8 Unmodified _EYEERDFI_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN47_class_I_Rep_2 3 550.7467041015625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 29.791 1 33.283 32.783 33.783 3.4923 0 0 0 0.40604 1 4821 4821 2.5775 0 1 + 6801 32081 4173 4178 8585 8585 -0.06355734415592451 EYEERDFI 8 Unmodified _EYEERDFI_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN47_class_I_Rep_2 3 550.7484741210938 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 42.065 1 45.427 44.927 45.927 3.3611 0 0 0 0.40604 1 8541 8541 2.5775 0 1 + 6802 32081 4173 4178 8586 8586 -0.06355734415592451 EYEERDFI 8 Unmodified _EYEERDFI_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN47_class_I_Rep_3 4 550.7486572265625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 24.031 1 27.382 26.882 27.882 3.3509 0 0 0 0.40604 1 3157 3157 2.5775 0 1 + 6803 32081 4173 4178 8587 8587 -0.06355734415592451 EYEERDFI 8 Unmodified _EYEERDFI_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN48_class_I_Rep_1 5 550.7484130859375 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 21.345 1 24.898 24.398 25.398 3.5533 0 0 0 0.40604 1 1940 1940 2.5775 0 1 + 6804 32081 4173 4178 8588 8588 -0.06355734415592451 EYEERDFI 8 Unmodified _EYEERDFI_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN48_class_I_Rep_1 5 550.7476806640625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 27.928 1 31.485 30.985 31.985 3.5571 0 0 0 0.40604 1 3666 3666 2.5775 0 1 + 6805 32081 4173 4178 8589 8589 -0.06355734415592451 EYEHSLIWHI 10 Unmodified _EYEHSLIWHI_ 0 0 0 MER65A_dup832|chrX:2638773-2639086:-|1.3365872550056446|0.028691641132446|5.54|150.0|4|2|sense MER65A_dup832|chrX:2638773-2639086:-|1.3365872550056446|0.028691641132446|5.54|150.0|4|2|sense MER65A_dup832|chrX:2638773-2639086:-|1.3365872550056446|0.028691641132446|5.54|150.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 442.88134765625 3 442.887422 1325.64044 NaN NaN NaN NaN NaN NaN NaN 54.45 1 54.45 53.95 54.95 0 0 0 0 0.53105 1 11789 11789 0.77653 0 1 6806 16174 4174 4179 8590 8590 -0.00935815436514531 EYFEHLCAY 9 Unmodified _EYFEHLCAY_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|91|2|sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|91|2|sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|91|2|sense MSMS UPN47_class_I_Rep_1 2 587.7482299804688 2 587.747324 1173.4801 NaN NaN NaN NaN NaN NaN NaN 16.426 1 19.949 19.449 20.449 3.5224 0 0 0 0.39428 1 1050 1050 2.0598 0.21551 1 6807 13730 4175 4180 8591 8591 -0.09970486425072522 EYFESPFTI 9 Unmodified _EYFESPFTI_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MULTI-SECPEP UPN48_class_I_Rep_1 5 567.3299560546875 2 566.763497 1131.51244 0.43614 0.00024719 0.7535 0.00042705 1.1896 0.00067424 566.7639748489789 82.99 0.17067 86.577 86.464 86.635 3.5871 26 19 2 0 0 0 0.118 1 19824 19824 6.2058 0.9089 1 89630 6808 5490 4176 4181 8592 8592 -0.048053757504249006 EYFESPFTI 9 Unmodified _EYFESPFTI_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MULTI-SECPEP UPN48_class_I_Rep_3 7 567.330322265625 2 566.763497 1131.51244 0.47542 0.00026945 0.62293 0.00035305 1.0983 0.0006225 566.7637330243342 83.007 0.27937 86.714 86.623 86.902 3.7066 55 37 2 0 0 0 0.118 1 19691 19691 10.074 1.3285 1 129460 6809 5490 4176 4181 8593 8593 -0.048053757504249006 EYFHIPTLP 9 Unmodified _EYFHIPTLP_ 0 0 0 REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|64|2|anti-sense REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|64|2|anti-sense MSMS UPN47_class_I_Rep_3 4 558.7899169921875 2 558.78985 1115.56515 NaN NaN NaN NaN NaN NaN NaN 28.472 1 31.806 31.306 32.306 3.3337 0 0 0 0.39428 1 4468 4468 2.0598 0 1 + 6810 27250 4177 4182 8594 8594 0.011986271030536955 EYFQKDWY 8 Unmodified _EYFQKDWY_ 0 0 0 L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|341|3|anti-sense L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|341|3|anti-sense L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|341|3|anti-sense MSMS UPN46_class_I_Rep_3 1 589.9532470703125 2 589.761289 1177.50803 NaN NaN NaN NaN NaN NaN NaN 37.659 1 37.659 37.159 38.159 0 0 0 0 0.39819 1 7104 7104 8.5933 0.68312 1 6811 14560 4178 4183 8595 8595 -0.0736284017334583 EYFRKFKK 8 Unmodified _EYFRKFKK_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|2|intron;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|1|intron;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|5|intron;ENSG00000151067.22,CACNA1C,chr12,+,I50.1,2677868,2679443|32|5.44|2|intron nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MSMS UPN48_class_I_Rep_1 5 573.3265380859375 2 573.326934 1144.63931 NaN NaN NaN NaN NaN NaN NaN 56.556 1 60.057 59.557 60.557 3.5014 0 0 0 0.40625 1 12180 12180 2.3027 0.4585 1 6812 3574 4179 4184 8596 8596 0.07278014985217851 EYFTGIKMAV 10 Unmodified _EYFTGIKMAV_ 0 0 0 nc|ENSG00000189046|Q6NS38-2|ALKBH2 nc|ENSG00000189046|Q6NS38-2|ALKBH2 nc|ENSG00000189046|Q6NS38-2|ALKBH2 MSMS UPN48_class_I_Rep_3 7 579.7943115234375 2 579.796817 1157.57908 NaN NaN NaN NaN NaN NaN NaN 71.615 1 75.142 74.642 75.642 3.5266 0 0 0 0.53105 1 16644 16644 5.7319 2.4505 1 6813 16788 4180 4185 8597 8597 0.006595365398197828 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|3|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|6|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|4|intron;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|2|intron;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17 ENST00000575656.5_1_16:24960717-24971282:-|nuORF ENST00000575656.5_1_16:24960717-24971282:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 552.292236328125 2 552.292225 1102.5699 0.54727 0.00030225 -0.085624 -4.729E-05 0.46165 0.00025496 552.2920428080362 68.585 1.0209 72.037 71.658 72.679 3.4517 241 85 4 0 0 0 0.0053074 6 15916 15802;15839;15874;15916;15954;15998 99.755 0 1 1549200 6814 3191 4181 4186 8598;8599;8600;8601;8602;8603 8601 0.02271511245817237 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|3|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|6|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|4|intron;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|2|intron;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17 ENST00000575656.5_1_16:24960717-24971282:-|nuORF ENST00000575656.5_1_16:24960717-24971282:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 552.2924194335938 2 552.292225 1102.5699 0.49953 0.00027589 -0.010977 -6.0624E-06 0.48855 0.00026982 552.2921116085552 68.449 0.87922 71.957 71.512 72.391 3.5083 190 79 4 0 0 0 0.0053074 3 15811 15740;15774;15811 79.596 0 1 1488200 6815 3191 4181 4186 8604;8605;8606 8606 0.02271511245817237 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|3|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|6|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|4|intron;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|2|intron;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17 ENST00000575656.5_1_16:24960717-24971282:-|nuORF ENST00000575656.5_1_16:24960717-24971282:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 552.2923583984375 2 552.292225 1102.5699 0.49723 0.00027462 -0.11954 -6.6018E-05 0.3777 0.0002086 552.29207584172 68.615 0.48701 72.123 72.068 72.555 3.5083 59 33 2 0 0 0 0.021334 3 15851 15851;15895;15939 62.573 0 1 881590 6816 3191 4181 4186 8607;8608;8609 8607 0.02271511245817237 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|3|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|6|intron;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|4|intron;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;ENSG00000140750.17,ARHGAP17,chr16,-,I22.1,24929661,24930783|23|10.47|2|intron;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17 ENST00000575656.5_1_16:24960717-24971282:-|nuORF ENST00000575656.5_1_16:24960717-24971282:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 552.29248046875 2 552.292225 1102.5699 0.44905 0.00024801 0.041791 2.3081E-05 0.49084 0.00027109 552.292119527729 68.295 1.0645 71.804 71.476 72.54 3.5093 190 89 3 0 0 0 0.0053074 4 15704 15635;15671;15704;15744 89.401 0 1 1581600 6817 3191 4181 4186 8610;8611;8612;8613 8612 0.02271511245817237 EYHHSFHTR 9 Unmodified _EYHHSFHTR_ 0 0 0 REV__ENSG00000137857|ENST00000389037|DUOX1 REV__ENSG00000137857|ENST00000389037|DUOX1 MULTI-SECPEP UPN48_class_I_Rep_2 6 405.2408142089844 3 405.188094 1212.54245 0.076395 3.0954E-05 1.7504 0.00070923 1.8268 0.00074018 405.1880918922304 76.8 0.052536 80.412 80.382 80.434 3.6116 7 4 2 0 0 0 0.12444 1 18141 18141 1.0715 0.057888 1 43278 + 6818 19249 4182 4187 8614 8614 -0.055315792418468845 EYHWSVYE 8 Unmodified _EYHWSVYE_ 0 0 0 nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS UPN47_class_I_Rep_1 2 556.738037109375 2 556.737814 1111.46108 -0.0097911 -5.4511E-06 -0.083033 -4.6227E-05 -0.092824 -5.1678E-05 556.7378021770184 39.702 0.74517 43.369 43.134 43.879 3.6668 85 55 2 0 0 0 0.82752 1 7786 7786 16.942 8.349 1 96502 6819 4469 4183 4188 8615 8615 -0.09019699724444763 EYIHYDLF 8 Unmodified _EYIHYDLF_ 0 0 0 REV__nc|ENSG00000170242|Q96K76-2|USP47 REV__nc|ENSG00000170242|Q96K76-2|USP47 MSMS UPN46_class_I_Rep_3 1 550.2744750976562 2 550.258382 1098.50221 NaN NaN NaN NaN NaN NaN NaN 61.734 1 61.734 61.234 62.234 0 0 0 0 0.40364 1 13758 13758 5.7604 0 1 + 6820 20352 4184 4189 8616 8616 -0.04309938685014458 EYIKKEKLKKK 11 Unmodified _EYIKKEKLKKK_ 0 0 0 REV__L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense REV__L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 478.97406005859375 3 478.972938 1433.89699 NaN NaN NaN NaN NaN NaN NaN 61.102 1 64.615 64.115 65.115 3.5129 0 0 0 0.38417 1 13475 13475 0.45452 0.35968 1 + 6821 27068 4185 4190 8617 8617 0.19739287067704936 EYIMYPPSPV 10 Unmodified _EYIMYPPSPV_ 0 0 0 L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|117|1|anti-sense L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|117|1|anti-sense L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|117|1|anti-sense MSMS UPN48_class_I_Rep_1 5 598.2897338867188 2 598.288825 1194.5631 NaN NaN NaN NaN NaN NaN NaN 70.386 1 73.846 73.346 74.346 3.4598 0 0 0 0.53105 1 16399 16399 6.7232 0 1 6822 9398 4186 4191 8618 8618 -0.02640169697087913 EYIPEEIQLY 10 Unmodified _EYIPEEIQLY_ 0 0 0 L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|10|1|sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|10|1|sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 432.88507080078125 3 432.883455 1295.62853 NaN NaN NaN NaN NaN NaN NaN 106.05 1 109.59 109.09 110.09 3.5367 0 0 0 0.53105 1 25941 25941 0.69767 0.07084 1 6823 12774 4187 4192 8619 8619 -0.007454769703599595 EYIQFVPLL 9 Unmodified _EYIQFVPLL_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS UPN48_class_I_Rep_3 7 561.3159790039062 2 561.3157 1120.61685 0.42467 0.00023837 -0.033415 -1.8756E-05 0.39126 0.00021962 561.3155774240071 95.02 0.52445 98.922 98.755 99.279 3.9016 81 68 2 0 0 0 0.13244 1 22523 22523 27.629 2.2295 1 127010 6824 4860 4188 4193 8620 8620 0.06136370796957635 EYIRKSYH 8 Unmodified _EYIRKSYH_ 0 0 0 L1M3_dup4886|chr12:66165761-66166177:-|1.3072495843094871|0.1807713923599028|2.85|151.0|9|2|sense L1M3_dup4886|chr12:66165761-66166177:-|1.3072495843094871|0.1807713923599028|2.85|151.0|9|2|sense L1M3_dup4886|chr12:66165761-66166177:-|1.3072495843094871|0.1807713923599028|2.85|151.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.293212890625 2 548.282723 1094.55089 0.31083 0.00017042 0.12672 6.9476E-05 0.43755 0.0002399 548.2827063462993 58.469 0.36871 58.469 58.211 58.58 0 54 42 2 0 0 0 0.82752 1 12886 12886 3.9444 0 1 159870 6825 8772 4189 4194 8621 8621 0.00739974674752375 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS UPN48_class_I_Rep_1 5 585.3005981445312 2 585.301113 1168.58767 0.41609 0.00024354 -0.25937 -0.00015181 0.15672 9.173E-05 585.3009988404831 50.868 0.61203 54.393 54.099 54.711 3.5246 69 38 2 0 0 0 0.14216 1 10492 10492 26.268 4.7312 1 243400 6826 3219 4190 4195 8622 8622 0.010122265006657472 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS UPN48_class_I_Rep_2 6 585.30126953125 2 585.301113 1168.58767 0.46313 0.00027107 -0.29191 -0.00017086 0.17121 0.00010021 585.3011010872693 50.713 0.65408 54.381 54.062 54.716 3.6679 60 39 2 0 0 0 0.0065234 1 10368 10368 74.2 26.605 1 278040 6827 3219 4190 4195 8623 8623 0.010122265006657472 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS UPN48_class_I_Rep_3 7 585.301513671875 2 585.301113 1168.58767 0.38425 0.0002249 -0.21452 -0.00012556 0.16973 9.9346E-05 585.3010805415838 50.826 0.59097 54.436 54.201 54.792 3.6105 66 40 2 0 0 0 0.006303 2 10325 10325;10379 83.429 27.926 1 257160 6828 3219 4190 4195 8624;8625 8624 0.010122265006657472 EYISVLQQI 9 Unmodified _EYISVLQQI_ 0 0 0 L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|11|1|anti-sense L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|11|1|anti-sense L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 546.8004760742188 2 546.800414 1091.58628 NaN NaN NaN NaN NaN NaN NaN 71.795 1 75.321 74.821 75.821 3.5266 0 0 0 0.058622 1 16697 16697 34.402 0 1 6829 9001 4191 4196 8626 8626 0.04414592411922058 EYKLVVCEY 9 Unmodified _EYKLVVCEY_ 0 0 0 REV__ENST00000463729.1_1_3:119263370-119276575:-|nuORF REV__ENST00000463729.1_1_3:119263370-119276575:-|nuORF MSMS UPN47_class_I_Rep_3 4 573.2811889648438 2 573.281 1144.54745 NaN NaN NaN NaN NaN NaN NaN 53.15 1 56.344 55.844 56.844 3.1948 0 0 0 0.37692 1 11966 11966 6.2058 0.47393 1 + 6830 18730 4192 4197 8627 8627 -0.01904456214106176 EYKQRKTH 8 Unmodified _EYKQRKTH_ 0 0 0 L1PA8A_dup2436|chr22:46817264-46822815:-|4.477623319494518|0.0656514705541751|6.09|151.0|25|1|sense L1PA8A_dup2436|chr22:46817264-46822815:-|4.477623319494518|0.0656514705541751|6.09|151.0|25|1|sense L1PA8A_dup2436|chr22:46817264-46822815:-|4.477623319494518|0.0656514705541751|6.09|151.0|25|1|sense MSMS UPN47_class_I_Rep_1 2 545.2938232421875 2 545.293622 1088.57269 NaN NaN NaN NaN NaN NaN NaN 25.664 1 29.426 28.926 29.926 3.7624 0 0 0 0.40659 1 3555 3555 1.8442 0.36234 1 6831 14977 4193 4198 8628 8628 0.031947794233246896 EYKRKKHYP 9 Unmodified _EYKRKKHYP_ 0 0 0 REV__ENST00000470475.1_1_1:45241268-45242451:+|nuORF REV__ENST00000470475.1_1_1:45241268-45242451:+|nuORF MSMS UPN48_class_I_Rep_2 6 624.8484497070312 2 624.846022 1247.67749 NaN NaN NaN NaN NaN NaN NaN 47.195 1 50.944 50.444 51.444 3.7494 0 0 0 0.39428 1 9303 9303 2.0598 0.40713 1 + 6832 19420 4194 4199 8629 8629 0.0635590089989364 EYKTTHYSF 9 Unmodified _EYKTTHYSF_ 0 0 0 L1MB2_dup681|chr2:26043876-26044185:+|1.075506982323231|0.0081920838814508|7.04|151.0|9|3|sense L1MB2_dup681|chr2:26043876-26044185:+|1.075506982323231|0.0081920838814508|7.04|151.0|9|3|sense L1MB2_dup681|chr2:26043876-26044185:+|1.075506982323231|0.0081920838814508|7.04|151.0|9|3|sense MSMS UPN48_class_I_Rep_1 5 588.27099609375 2 588.272021 1174.52949 NaN NaN NaN NaN NaN NaN NaN 55.019 1 58.527 58.027 59.027 3.5082 0 0 0 0.38639 1 11705 11705 3.9444 0 1 6833 10272 4195 4200 8630 8630 -0.0507945514466428 EYKTTHYSF 9 Unmodified _EYKTTHYSF_ 0 0 0 L1MB2_dup681|chr2:26043876-26044185:+|1.075506982323231|0.0081920838814508|7.04|151.0|9|3|sense L1MB2_dup681|chr2:26043876-26044185:+|1.075506982323231|0.0081920838814508|7.04|151.0|9|3|sense L1MB2_dup681|chr2:26043876-26044185:+|1.075506982323231|0.0081920838814508|7.04|151.0|9|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 588.2728271484375 2 588.272021 1174.52949 0.59332 0.00034903 0.056419 3.319E-05 0.64974 0.00038222 588.2719537092927 54.826 0.52181 58.408 58.127 58.649 3.5817 54 32 2 0 0 0 0.47493 1 11578 11578 3.2813 0.70383 1 136620 6834 10272 4195 4200 8631 8631 -0.0507945514466428 EYKVIIAL 8 Unmodified _EYKVIIAL_ 0 0 0 REV__L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|1|1|sense REV__L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 474.79205322265625 2 474.791861 947.569169 NaN NaN NaN NaN NaN NaN NaN 64.524 1 64.524 64.024 65.024 0 0 0 0 0.37681 1 14527 14527 15.847 0 1 + 6835 27064 4196 4201 8632 8632 0.09328716596746744 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_1 5 585.776123046875 2 585.776939 1169.53933 0.45414 0.00026602 -0.050725 -2.9713E-05 0.40341 0.00023631 585.7768545466444 70.321 0.32437 73.78 73.584 73.908 3.4598 35 24 2 0 0 0 0.09884 3 16402 16334;16380;16402 34.102 12.356 1 167980 6836 1473 4197 4202 8633;8634;8635 8635 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_1 5 585.7771606445312 2 585.776939 1169.53933 0.45372 0.00026578 -0.086611 -5.0735E-05 0.36711 0.00021505 585.7767554155535 70.516 0.26538 73.976 73.908 74.174 3.4598 43 26 2 0 0 0 0.12799 2 16467 16423;16467 28.487 16.847 1 144630 6837 1473 4197 4202 8636;8637 8637 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_2 6 585.777587890625 2 585.776939 1169.53933 NaN NaN NaN NaN NaN NaN NaN 70.173 1 73.709 73.209 74.209 3.5359 0 0 0 0.081393 1 16308 16308 28.487 14.581 1 6838 1473 4197 4202 8638 8638 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_2 6 585.776123046875 2 585.776939 1169.53933 NaN NaN NaN NaN NaN NaN NaN 70.185 1 73.72 73.22 74.22 3.5359 0 0 0 0.059724 1 16311 16311 34.102 12.356 1 6839 1473 4197 4202 8639 8639 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_2 6 585.777587890625 2 585.776939 1169.53933 NaN NaN NaN NaN NaN NaN NaN 70.452 1 73.988 73.488 74.488 3.5359 0 0 0 0.35339 1 16389 16389 7.9102 5.0209 1 6840 1473 4197 4202 8640 8640 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_3 7 585.7763061523438 2 585.776939 1169.53933 0.55942 0.00032769 -0.336 -0.00019682 0.22341 0.00013087 585.7767817176823 70.251 0.36469 73.764 73.512 73.877 3.5128 49 30 2 0 0 0 0.18929 4 16243 16186;16206;16238;16243 21.747 10.106 1 155640 6841 1473 4197 4202 8641;8642;8643;8644 8644 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_3 7 585.7771606445312 2 585.776939 1169.53933 NaN NaN NaN NaN NaN NaN NaN 70.369 1 73.887 73.387 74.387 3.5185 0 0 0 0.28335 1 16279 16279 11.64 6.4096 1 6842 1473 4197 4202 8645 8645 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_3 7 585.7767333984375 2 585.776939 1169.53933 NaN NaN NaN NaN NaN NaN NaN 70.675 1 74.193 73.693 74.693 3.5185 0 0 0 0.39428 1 16365 16365 2.0598 0.40713 1 6843 1473 4197 4202 8646 8646 -0.038662671392330594 EYLFKNLLK 9 Unmodified _EYLFKNLLK_ 0 0 0 L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|10|1|sense L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|10|1|sense L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.3428955078125 2 584.342249 1166.66995 0.51854 0.000303 -0.073883 -4.3173E-05 0.44465 0.00025983 584.3421670474555 57.76 0.90209 61.254 60.95 61.852 3.4942 130 63 3 0 0 0 0.48846 1 12686 12686 1.8442 0 1 559080 6844 10644 4198 4203 8647 8647 0.09327748579607942 EYLFLHRQ 8 Unmodified _EYLFLHRQ_ 0 0 0 REV__nc|ENSG00000101977|P10911-6|MCF2 REV__nc|ENSG00000101977|P10911-6|MCF2 MSMS UPN47_class_I_Rep_3 4 553.2939453125 2 553.293091 1104.57163 NaN NaN NaN NaN NaN NaN NaN 22.488 1 25.838 25.338 26.338 3.3503 0 0 0 0.40604 1 2699 2699 2.5775 0 1 + 6845 31951 4199 4204 8648 8648 0.023525650544115706 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1 ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000466052.1_1_1:33256818-33263474:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 556.7847290039062 2 556.784764 1111.55498 0.50685 0.00028221 -0.12076 -6.7236E-05 0.38609 0.00021497 556.784543358607 54.016 0.68554 57.531 57.183 57.868 3.5143 113 48 3 0 0 0 0.0053074 3 11386 11346;11386;11427 79.596 37.757 1 466370 6846 2859 4200 4205 8649;8650;8651 8650 0.0036601937779323634 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1 ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000466052.1_1_1:33256818-33263474:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 556.7846069335938 2 556.784764 1111.55498 0.58119 0.0003236 -0.23207 -0.00012922 0.34912 0.00019438 556.7845264788536 53.96 0.72209 57.541 57.174 57.896 3.5817 103 48 3 0 0 0 0.019142 4 11359 11275;11323;11359;11396 63.961 29.559 1 338680 6847 2859 4200 4205 8652;8653;8654;8655 8654 0.0036601937779323634 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1 ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000466052.1_1_1:33256818-33263474:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 556.7847290039062 2 556.784764 1111.55498 0.25497 0.00014196 0.19 0.00010579 0.44497 0.00024775 556.7847309011116 53.939 0.72773 57.523 57.167 57.895 3.5836 113 50 3 0 0 0 0.006828 3 11285 11246;11285;11324 103.35 51.085 1 343640 6848 2859 4200 4205 8656;8657;8658 8657 0.0036601937779323634 EYLNNRMKK 9 Unmodified _EYLNNRMKK_ 0 0 0 ENSG00000157856|ENST00000288710|DRC1;ENST00000421869.5_1_2:26644175-26667095:+|nuORF ENSG00000157856|ENST00000288710|DRC1 ENSG00000157856|ENST00000288710|DRC1 MSMS UPN48_class_I_Rep_3 7 598.3167114257812 2 598.31624 1194.61793 NaN NaN NaN NaN NaN NaN NaN 52.276 1 55.874 55.374 56.374 3.5979 0 0 0 0.3967 1 10785 10785 1.4819 0.15237 1 6849 3781 4201 4206 8659 8659 0.028402618941981927 EYLYGDESY 9 Unmodified _EYLYGDESY_ 0 0 0 REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF MSMS UPN47_class_I_Rep_3 4 569.7086181640625 2 569.732394 1137.45024 NaN NaN NaN NaN NaN NaN NaN 21.307 1 24.656 24.156 25.156 3.3496 0 0 0 0.39428 1 2361 2361 2.0598 0 1 + 6850 18991 4202 4207 8660 8660 -0.11299146889405165 EYMAPCHTLH 10 Unmodified _EYMAPCHTLH_ 0 0 0 REV__L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|99|3|anti-sense REV__L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|99|3|anti-sense MSMS UPN47_class_I_Rep_1 2 601.2601928710938 2 601.260076 1200.5056 NaN NaN NaN NaN NaN NaN NaN 23.482 1 27.186 26.686 27.686 3.7042 0 0 0 0.53105 1 2909 2909 1.4819 0.68827 1 + 6851 24619 4203 4208 8661 8661 -0.08663335174310305 EYMDSGRGT 9 Unmodified _EYMDSGRGT_ 0 0 0 L1PA7_dup11756|chr15:50073108-50073682:-|1.964758862525124|0.0036292184972485|9.08|151.0|8|1|sense L1PA7_dup11756|chr15:50073108-50073682:-|1.964758862525124|0.0036292184972485|9.08|151.0|8|1|sense L1PA7_dup11756|chr15:50073108-50073682:-|1.964758862525124|0.0036292184972485|9.08|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 508.2117004394531 2 508.211106 1014.40766 NaN NaN NaN NaN NaN NaN NaN 62.271 1 65.745 65.245 66.245 3.4738 0 0 0 0.37692 1 13902 13902 6.2058 0.97511 1 6852 14738 4204 4209 8662 8662 -0.09896820498624948 EYMKMMGV 8 Unmodified _EYMKMMGV_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MSMS UPN48_class_I_Rep_3 7 494.71929931640625 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 24.585 1 28.354 27.854 28.854 3.769 0 0 0 0.40625 1 2868 2868 2.3027 0 1 6853 3354 4205 4210 8663 8663 -0.07143368226638813 EYNEVANLF 9 Unmodified _EYNEVANLF_ 0 0 0 nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11;nc|ENSG00000111224|Q9NR21-5|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 MULTI-SECPEP UPN48_class_I_Rep_1 5 549.7953491210938 2 549.758746 1097.50294 0.51479 0.00028301 -0.24398 -0.00013413 0.27081 0.00014888 549.7585567266754 71.56 0.52695 75.026 74.825 75.352 3.466 87 47 2 0 0 0 0.040212 1 16755 16755 53.833 22.564 1 238360 6854 1962 4206 4211 8664 8664 -0.041911440359626795 EYNEVANLF 9 Unmodified _EYNEVANLF_ 0 0 0 nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11;nc|ENSG00000111224|Q9NR21-5|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 MULTI-MSMS UPN48_class_I_Rep_2 6 549.7589111328125 2 549.758746 1097.50294 0.48166 0.0002648 0.11734 6.4506E-05 0.599 0.0003293 549.7587465276614 71.434 0.59362 74.985 74.715 75.309 3.5505 101 59 2 0 0 0 0.052902 1 16687 16687 47.749 21.407 1 194670 6855 1962 4206 4211 8665 8665 -0.041911440359626795 EYNEVANLF 9 Unmodified _EYNEVANLF_ 0 0 0 nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11;nc|ENSG00000111224|Q9NR21-5|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 MULTI-MSMS UPN48_class_I_Rep_3 7 549.7590942382812 2 549.758746 1097.50294 0.47736 0.00026243 0.040979 2.2528E-05 0.51834 0.00028496 549.7587586253662 71.459 0.60086 74.986 74.674 75.275 3.5266 108 53 3 0 0 0 0.0059033 1 16587 16587 81.89 35.869 1 219340 6856 1962 4206 4211 8666 8666 -0.041911440359626795 EYNLHYYG 8 Unmodified _EYNLHYYG_ 0 0 0 REV__LTR8A_dup684|chr9:2769973-2770545:-|1.0780570620142111|0.2542493531235882|2.08|151.0|36|2|anti-sense REV__LTR8A_dup684|chr9:2769973-2770545:-|1.0780570620142111|0.2542493531235882|2.08|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 529.732421875 2 529.732532 1057.45051 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.55 121.05 122.05 3.6627 0 0 0 0.40738 1 28260 28260 0.79363 0 1 + 6857 31038 4207 4212 8667 8667 -0.0759168237891572 EYPDRIINTF 10 Unmodified _EYPDRIINTF_ 0 0 0 ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000430210.1_1_1:227681388-227682478:-|nuORF ENSG00000261456|ENST00000568584|TUBB8 ENSG00000261456|ENST00000568584|TUBB8 MSMS UPN48_class_I_Rep_3 7 634.3190307617188 2 634.319502 1266.62445 NaN NaN NaN NaN NaN NaN NaN 61.458 1 64.971 64.471 65.471 3.5128 0 0 0 0.53105 1 13584 13584 1.1933 0 1 6858 5787 4208 4213 8668 8668 0.0018047832656975515 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN48_class_I_Rep_1 5 643.2979736328125 2 643.297713 1284.58087 0.52996 0.00034092 0.019756 1.2709E-05 0.54971 0.00035363 643.2977061388201 56.876 0.81332 60.37 60.049 60.862 3.4942 161 70 3 0 0 0 0.026782 6 12264 12223;12264;12302;12341;12381;12404 97.741 68.659 1 722300 6859 5222;5291 4209 4214 8669;8670;8671;8672;8673;8674 8670 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN48_class_I_Rep_2 6 643.2977905273438 2 643.297713 1284.58087 0.60877 0.00039162 -0.072104 -4.6384E-05 0.53667 0.00034524 643.297621806415 56.869 0.71323 60.402 60.122 60.835 3.5333 159 64 3 0 0 0 0.00058504 5 12230 12190;12230;12269;12307;12346 103.82 67.697 1 568330 6860 5222;5291 4209 4214 8675;8676;8677;8678;8679 8676 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN48_class_I_Rep_3 7 643.2980346679688 2 643.297713 1284.58087 0.55204 0.00035512 -0.053661 -3.452E-05 0.49837 0.0003206 643.2976963087056 56.751 0.76244 60.293 59.98 60.743 3.5427 169 75 3 0 0 0 0.012092 5 12176 12103;12141;12176;12209;12249 100.09 68.822 1 487890 6861 5222;5291 4209 4214 8680;8681;8682;8683;8684 8682 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH UPN48_class_I_Rep_3 7 2 643.297713 1284.58087 0.56116 0.00036099 -1.4916 -0.00095956 -0.93047 -0.00059857 643.2960517640789 57.226 0.041359 60.769 60.743 60.784 3.5427 0.25548 -0.0018821 NaN 103.82 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48096 6862 5222;5291 4209 4214 -0.050034544422260296 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 555.28466796875 2 555.284931 1108.55531 0.65392 0.00036311 -0.35521 -0.00019724 0.29871 0.00016587 555.2845823801348 60.719 0.70176 64.193 63.888 64.59 3.4737 83 56 2 0 0 0 0.16559 2 13450 13410;13450 24.021 9.1823 1 203560 6863 6621 4210 4215 8685;8686 8686 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MSMS UPN48_class_I_Rep_2 6 555.2847290039062 2 555.284931 1108.55531 NaN NaN NaN NaN NaN NaN NaN 60.597 1 64.076 63.576 64.576 3.4785 0 0 0 0.10315 1 13395 13395 24.021 3.5669 1 6864 6621 4210 4215 8687 8687 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 555.2843017578125 2 555.284931 1108.55531 0.38851 0.00021573 -0.038113 -2.1164E-05 0.35039 0.00019457 555.2847571850558 60.499 0.38736 64.015 63.69 64.078 3.5169 54 33 2 0 0 0 0.15122 2 13296 13256;13296 25.399 7.6167 1 255890 6865 6621 4210 4215 8688;8689 8689 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 555.2849731445312 2 555.284931 1108.55531 0.39359 0.00021855 -0.11325 -6.2889E-05 0.28033 0.00015566 555.284643787256 60.719 0.25202 64.232 64.063 64.315 3.5128 43 27 2 0 0 0 0.066633 1 13332 13332 41.84 9.5341 1 211350 6866 6621 4210 4215 8690 8690 0.0053743909768400044 EYPKVRCVH 9 Unmodified _EYPKVRCVH_ 0 0 0 REV__L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|5|1|sense REV__L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 565.7914428710938 2 565.792401 1129.57025 NaN NaN NaN NaN NaN NaN NaN 52.066 1 55.664 55.164 56.164 3.5979 0 0 0 0.38639 1 10725 10725 3.9444 0.66309 1 + 6867 28352 4211 4216 8691 8691 0.010646076940020066 EYPLSGTTI 9 Unmodified _EYPLSGTTI_ 0 0 0 REV__L1MC5a_dup6129|chr6:30202312-30203042:+|2.0103054139338976|0.315081270021458|2.67|151.0|33|1|anti-sense REV__L1MC5a_dup6129|chr6:30202312-30203042:+|2.0103054139338976|0.315081270021458|2.67|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7508850097656 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 25.229 1 28.58 28.08 29.08 3.3509 0 0 0 0.2088 1 3514 3514 15.847 1.2655 1 + 6868 27168 4212 4217 8692 8692 -0.004336449219067617 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000473682.5_1_1:111740397-111743081:-|nuORF ENST00000473682.5_1_1:111740397-111743081:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 588.773193359375 2 588.272021 1174.52949 0.45748 0.00026912 0.036771 2.1631E-05 0.49425 0.00029075 588.2718189058426 54.803 0.39493 58.311 58.142 58.537 3.5082 37 27 2 0 0 0 0.31407 1 11664 11664 13.042 3.6593 1 137340 6869 3960 4213 4218 8693 8693 -0.050794551446415426 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000473682.5_1_1:111740397-111743081:-|nuORF ENST00000473682.5_1_1:111740397-111743081:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 588.271728515625 2 588.272021 1174.52949 0.59332 0.00034903 0.056419 3.319E-05 0.64974 0.00038222 588.2719537092927 54.826 0.52181 58.408 58.127 58.649 3.5817 54 32 2 0 0 0 0.23293 1 11627 11627 18.146 4.2403 1 136620 6870 3960 4213 4218 8694 8694 -0.050794551446415426 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000473682.5_1_1:111740397-111743081:-|nuORF ENST00000473682.5_1_1:111740397-111743081:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 588.2725830078125 2 588.272021 1174.52949 0.37308 0.00021947 0.32963 0.00019391 0.70271 0.00041338 588.2719969716765 54.823 0.45967 58.392 58.098 58.557 3.5694 49 28 2 0 0 0 0.31407 2 11536 11536;11585 13.042 2.3939 1 122050 6871 3960 4213 4218 8695;8696 8695 -0.050794551446415426 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D ENST00000473682.5_1_1:111740397-111743081:-|nuORF ENST00000473682.5_1_1:111740397-111743081:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 588.272021 1174.52949 0.37896 0.00022293 -0.04496 -2.6449E-05 0.334 0.00019648 588.2717890428969 55.032 0.064323 58.601 58.557 58.622 3.5694 0.16143 -0.00010357 NaN 18.146 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 49608 6872 3960 4213 4218 -0.050794551446415426 EYPYWDTI 8 Unmodified _EYPYWDTI_ 0 0 0 REV__L1MC3_dup5841|chr7:148856029-148857437:+|2.050799183756554|0.0123304526121584|7.38|151.0|71|1|anti-sense REV__L1MC3_dup5841|chr7:148856029-148857437:+|2.050799183756554|0.0123304526121584|7.38|151.0|71|1|anti-sense MSMS UPN47_class_I_Rep_3 4 543.7430419921875 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 25.048 1 28.399 27.899 28.899 3.3509 0 0 0 0.40625 1 3458 3458 2.3027 0 1 + 6873 26766 4214 4219 8697 8697 -0.06873931438940417 EYPYWDTI 8 Unmodified _EYPYWDTI_ 0 0 0 REV__L1MC3_dup5841|chr7:148856029-148857437:+|2.050799183756554|0.0123304526121584|7.38|151.0|71|1|anti-sense REV__L1MC3_dup5841|chr7:148856029-148857437:+|2.050799183756554|0.0123304526121584|7.38|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_1 5 543.7429809570312 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 24.979 1 28.545 28.045 29.045 3.5667 0 0 0 0.40404 1 2839 2839 5.2307 0 1 + 6874 26766 4214 4219 8698 8698 -0.06873931438940417 EYQKFVCP 8 Unmodified _EYQKFVCP_ 0 0 0 REV__MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|29|3|sense REV__MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 507.2519836425781 2 507.241678 1012.4688 NaN NaN NaN NaN NaN NaN NaN 32.183 1 32.183 31.683 32.683 0 0 0 0 0.39819 1 5474 5474 8.5933 2.8329 1 + 6875 31095 4215 4220 8699 8699 -0.0369326372855312 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS UPN48_class_I_Rep_1 5 613.8135986328125 2 613.813856 1225.61316 0.46949 0.00028818 -0.66903 -0.00041066 -0.19954 -0.00012248 613.8134177513722 69.78 0.39006 73.24 73.049 73.439 3.4598 38 28 2 0 0 0 0.13244 2 16208 16208;16257 27.629 4.8925 1 122330 6876 962 4216 4221 8700;8701 8700 0.009377010230764427 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MSMS UPN48_class_I_Rep_2 6 613.8145751953125 2 613.813856 1225.61316 NaN NaN NaN NaN NaN NaN NaN 69.786 1 73.307 72.807 73.807 3.5216 0 0 0 0.31276 1 16189 16189 10.074 2.465 1 6877 962 4216 4221 8702 8702 0.009377010230764427 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS UPN48_class_I_Rep_3 7 614.314208984375 2 613.813856 1225.61316 0.62924 0.00038624 -0.4158 -0.00025522 0.21344 0.00013101 613.8136189670231 69.642 0.4312 73.155 72.897 73.328 3.5128 39 35 2 0 0 0 0.074399 1 16040 16040 39.95 15.929 1 99487 6878 962 4216 4221 8703 8703 0.009377010230764427 EYQVHLPPTF 10 Unmodified _EYQVHLPPTF_ 0 0 0 ENST00000521892.1_7:102249786-102257136:-|nuORF;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|3|intron;ENST00000427076.5_1_7:44005990-44026228:-|nuORF;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|2|intron;ENST00000523568.1_7:102240831-102257136:-|nuORF;ENST00000454572.1_1_7:44005962-44058742:-|nuORF;ENST00000522443.1_7:102249007-102257136:-|nuORF;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|6|intron;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|4|intron;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4 ENST00000521892.1_7:102249786-102257136:-|nuORF ENST00000521892.1_7:102249786-102257136:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 615.81201171875 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.2363 1 15542 15542 39.95 1.9757 1 904810 6879 1761 4217 4222 8704 8704 0.002453971604609251 EYQVHLPPTF 10 Unmodified _EYQVHLPPTF_ 0 0 0 ENST00000521892.1_7:102249786-102257136:-|nuORF;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|3|intron;ENST00000427076.5_1_7:44005990-44026228:-|nuORF;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|2|intron;ENST00000523568.1_7:102240831-102257136:-|nuORF;ENST00000454572.1_1_7:44005962-44058742:-|nuORF;ENST00000522443.1_7:102249007-102257136:-|nuORF;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|6|intron;ENSG00000170667.15,RASA4B,chr7,-,I2.1,102510293,102511924|44|4.75|4|intron;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4 ENST00000521892.1_7:102249786-102257136:-|nuORF ENST00000521892.1_7:102249786-102257136:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 615.8119506835938 2 615.811313 1229.60807 0.62552 0.0003852 0.26056 0.00016046 0.88608 0.00054566 615.8115476347172 67.293 0.96441 70.801 70.328 71.292 3.5077 191 78 3 0 0 0 0.30128 2 15307 15307;15345 32.786 2.1491 1 835100 6880 1761 4217 4222 8705;8706 8705 0.002453971604609251 EYRIKVNSY 9 Unmodified _EYRIKVNSY_ 0 0 0 L1MEi_dup504|chr2:47876250-47877009:-|3.3015380117723785|0.0164877450082006|7.65|151.0|36|2|anti-sense L1MEi_dup504|chr2:47876250-47877009:-|3.3015380117723785|0.0164877450082006|7.65|151.0|36|2|anti-sense L1MEi_dup504|chr2:47876250-47877009:-|3.3015380117723785|0.0164877450082006|7.65|151.0|36|2|anti-sense MSMS UPN46_class_I_Rep_3 1 586.3092651367188 2 586.308938 1170.60332 NaN NaN NaN NaN NaN NaN NaN 54.693 1 54.693 54.193 55.193 0 0 0 0 0.37692 1 11856 11856 6.2058 2.2614 1 6881 13461 4218 4223 8707 8707 0.024845130177027386 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN48_class_I_Rep_1 5 594.769775390625 2 594.769645 1187.52474 0.43043 0.00025601 -0.31367 -0.00018656 0.11676 6.9448E-05 594.7695530722971 52.099 0.27167 55.622 55.552 55.824 3.5227 52 29 2 0 0 0 0.073198 1 10801 10801 40.239 13.971 1 311900 6882 1621 4219 4224 8708 8708 -0.06152339287382347 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-SECPEP UPN48_class_I_Rep_1 5 595.1541137695312 2 594.769645 1187.52474 0.42916 0.00025525 -0.22555 -0.00013415 0.20361 0.0001211 594.769955981762 51.99 0.17702 55.513 55.383 55.56 3.5227 19 17 2 0 0 0 0.059918 1 10751 10751 34.932 9.9411 1 187590 6883 1621 4219 4224 8709 8709 -0.06152339287382347 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN48_class_I_Rep_2 6 595.2688598632812 2 594.769645 1187.52474 0.5089 0.00030268 -1.2396 -0.00073727 -0.73068 -0.00043459 594.7694080652649 52.015 0.41329 55.654 55.506 55.919 3.639 60 43 2 0 0 0 0.048662 1 10778 10778 49.554 14.622 1 236910 6884 1621 4219 4224 8710 8710 -0.06152339287382347 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN48_class_I_Rep_3 7 595.2703857421875 2 594.769645 1187.52474 0.39414 0.00023442 -0.69498 -0.00041336 -0.30084 -0.00017893 594.7697572731637 52.04 0.3834 55.638 55.514 55.897 3.5979 67 43 3 0 0 0 0.038999 2 10729 10726;10729 53.404 22.136 1 204680 6885 1621 4219 4224 8711;8712 8712 -0.06152339287382347 EYRRGQRL 8 Unmodified _EYRRGQRL_ 0 0 0 L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|166|3|sense L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|166|3|sense L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|166|3|sense MSMS UPN48_class_I_Rep_1 5 539.2981567382812 2 539.299239 1076.58392 NaN NaN NaN NaN NaN NaN NaN 45.194 1 48.71 48.21 49.21 3.5162 0 0 0 0.40157 1 8690 8690 7.2892 2.0586 1 6886 14891 4220 4225 8713 8713 0.0486960151747553 EYRSFLLFV 9 Unmodified _EYRSFLLFV_ 0 0 0 REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|45|2|anti-sense REV__L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.8204345703125 2 587.318774 1172.623 0.53299 0.00031303 0.24067 0.00014135 0.77365 0.00045438 587.3188653228009 52.785 0.84722 56.395 56.074 56.922 3.6098 98 53 2 0 0 0 0.42249 1 11156 11156 6.7232 1.8262 1 314470 + 6887 26255 4221 4226 8714 8714 0.043588890284581794 EYRSGEASE 9 Unmodified _EYRSGEASE_ 0 0 0 nc|ENSG00000087074|O75807-2|PPP1R15A;ENSG00000087074|ENST00000200453|PPP1R15A nc|ENSG00000087074|O75807-2|PPP1R15A nc|ENSG00000087074|O75807-2|PPP1R15A MULTI-MSMS UPN46_class_I_Rep_3 1 514.2199096679688 2 514.219985 1026.42542 -0.060306 -3.1011E-05 0.07395 3.8027E-05 0.013644 7.0158E-06 514.2199866141121 24.46 0.99898 24.46 24.087 25.086 0 253 103 4 0 0 0 0.24936 1 3248 3248 17.113 17.113 1 623570 6888 1289 4222 4227 8715 8715 -0.08673781972129291 EYSASPGWCL 10 Unmodified _EYSASPGWCL_ 0 0 0 ENST00000373202.7_1_10:72638895-72639066:+|nuORF ENST00000373202.7_1_10:72638895-72639066:+|nuORF ENST00000373202.7_1_10:72638895-72639066:+|nuORF MSMS UPN48_class_I_Rep_1 5 556.739013671875 2 556.739499 1111.46445 NaN NaN NaN NaN NaN NaN NaN 40.618 1 44.123 43.623 44.623 3.5048 0 0 0 0.53105 1 7310 7310 6.2058 1.8765 1 6889 6409 4223 4228 8716 8716 -0.0868277294212021 EYSHIVSKF 9 Unmodified _EYSHIVSKF_ 0 0 0 MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|29|1|anti-sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|29|1|anti-sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.2845458984375 2 555.284931 1108.55531 NaN NaN NaN NaN NaN NaN NaN 60.756 1 64.234 63.734 64.734 3.4785 0 0 0 0.15455 1 13441 13441 19.257 0 1 6890 15959 4224 4229 8717 8717 0.005374390976612631 EYSIVIQQL 9 Unmodified _EYSIVIQQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST;ENSG00000244038|ENST00000602624|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS UPN48_class_I_Rep_1 5 547.3020629882812 2 546.800414 1091.58628 0.48462 0.00026499 -0.081573 -4.4604E-05 0.40305 0.00022039 546.8004457804899 71.951 0.30566 75.424 75.347 75.653 3.4732 33 29 2 0 0 0 0.15122 1 16876 16876 25.399 0 1 80378 6891 16836 4225 4230 8718 8718 0.04414592411899321 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_1 5 406.19744873046875 3 406.197491 1215.57064 -0.060287 -2.4488E-05 -0.030061 -1.2211E-05 -0.090348 -3.6699E-05 406.1975115352622 27.253 0.35259 30.816 30.636 30.989 3.5629 66 35 3 0 0 0 0.46933 1 3464 3464 3.8763 2.8049 1 96276 6892 2184 4226 4231 8719 8719 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_1 5 406.197509765625 3 406.197491 1215.57064 -0.061543 -2.4999E-05 -0.084155 -3.4183E-05 -0.1457 -5.9182E-05 406.19746832644574 27.492 0.24793 31.055 30.989 31.237 3.5629 45 26 2 0 0 0 0.46933 1 3549 3549 3.8763 2.4212 1 78684 6893 2184 4226 4231 8720 8720 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MSMS UPN48_class_I_Rep_1 5 406.1971130371094 3 406.197491 1215.57064 NaN NaN NaN NaN NaN NaN NaN 27.334 1 30.896 30.396 31.396 3.5629 0 0 0 0.18341 1 3504 3504 17.443 10.341 1 6894 2184 4226 4231 8721 8721 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_2 6 406.19775390625 3 406.197491 1215.57064 0.11153 4.5305E-05 -0.30546 -0.00012408 -0.19392 -7.8771E-05 406.1973355040273 27.368 0.69563 30.999 30.712 31.408 3.6311 122 75 2 0 0 0 0.24411 4 3624 3590;3624;3657;3699 17.443 12.395 1 91390 6895 2184 4226 4231 8722;8723;8724;8725 8723 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_3 7 406.5318603515625 3 406.197491 1215.57064 -0.010245 -4.1613E-06 1.0281 0.00041761 1.0179 0.00041345 406.19740277090256 27.237 0.61198 30.992 30.732 31.344 3.7555 141 76 4 0 0 0 0.42411 2 3546 3513;3546 6.6304 4.1319 1 76363 6896 2184 4226 4231 8726;8727 8727 -0.028520173767901724 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS UPN48_class_I_Rep_1 5 638.8137817382812 2 638.814053 1275.61355 0.47398 0.00030279 0.00086905 5.5516E-07 0.47485 0.00030334 638.8139040147606 54.321 0.48643 57.836 57.635 58.121 3.5143 57 34 3 0 0 0 0.21352 3 11479 11479;11489;11534 45.74 26.378 1 146320 6897 3951 4227 4232 8728;8729;8730 8728 -0.013229240477357962 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS UPN48_class_I_Rep_2 6 639.3177490234375 2 638.814053 1275.61355 0.59577 0.00038059 -0.021378 -1.3657E-05 0.57439 0.00036693 638.8138336907019 54.328 0.57365 57.91 57.654 58.228 3.5817 48 34 2 0 0 0 0.32646 3 11489 11422;11467;11489 26.268 15.634 1 120100 6898 3951 4227 4232 8731;8732;8733 8733 -0.013229240477357962 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS UPN48_class_I_Rep_3 7 638.8132934570312 2 638.814053 1275.61355 0.48573 0.00031029 0.083007 5.3026E-05 0.56874 0.00036332 638.8140497888124 54.242 0.39701 57.811 57.643 58.04 3.5694 39 23 2 0 0 0 0.21204 3 11369 11369;11412;11423 47.594 22.927 1 113710 6899 3951 4227 4232 8734;8735;8736 8734 -0.013229240477357962 EYTFFHQY 8 Unmodified _EYTFFHQY_ 0 0 0 L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|215|3|sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|215|3|sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|215|3|sense MSMS UPN48_class_I_Rep_2 6 567.7493286132812 2 567.748182 1133.48181 NaN NaN NaN NaN NaN NaN NaN 27.823 1 31.454 30.954 31.954 3.6311 0 0 0 0.40604 1 3743 3743 2.5775 0 1 6900 15247 4228 4233 8737 8737 -0.07959109344801618 EYTFFSVPHC 10 Unmodified _EYTFFSVPHC_ 0 0 0 L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|30|1|sense;L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|143|3|sense L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|30|1|sense L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|30|1|sense MSMS UPN48_class_I_Rep_3 7 615.2680053710938 2 615.268424 1228.5223 NaN NaN NaN NaN NaN NaN NaN 40.561 1 44.212 43.712 44.712 3.6509 0 0 0 0.53105 1 7228 7228 1.6526 0.17072 1 6901 14508 4229 4234 8738 8738 -0.08282511016682292 EYTFSFNF 8 Unmodified _EYTFSFNF_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|190|1|anti-sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|190|1|anti-sense MSMS UPN46_class_I_Rep_3 1 527.7288818359375 2 527.729458 1053.44436 NaN NaN NaN NaN NaN NaN NaN 30.786 1 30.786 30.286 31.286 0 0 0 0 0.39615 1 5063 5063 9.3831 2.66 1 + 6902 29209 4230 4235 8739 8739 -0.08022200610412256 EYTIGEELEI 10 Unmodified _EYTIGEELEI_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-7|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-7|NEK10 MSMS UPN48_class_I_Rep_2 6 598.2894897460938 2 598.290076 1194.5656 NaN NaN NaN NaN NaN NaN NaN 70.277 1 73.813 73.313 74.313 3.5359 0 0 0 0.53105 1 16338 16338 13.906 0.86358 1 + 6903 19980 4231 4236 8740 8740 -0.023900427584294448 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS UPN48_class_I_Rep_2 6 563.31884765625 2 563.318774 1124.623 0.48385 0.00027256 -0.12296 -6.9268E-05 0.36088 0.00020329 563.3186920773431 72.053 0.38989 75.603 75.535 75.925 3.5505 103 40 3 0 0 0 0.097406 1 16851 16851 34.402 2.0962 1 303530 6904 2634 4232 4237 8741 8741 0.06566889028476908 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS UPN48_class_I_Rep_3 7 563.3187866210938 2 563.318774 1124.623 0.48688 0.00027427 -0.24647 -0.00013884 0.24041 0.00013543 563.3185259603894 72.06 0.75462 75.586 75.283 76.038 3.5266 167 76 3 0 0 0 0.074399 1 16778 16778 39.95 7.164 1 381900 6905 2634 4232 4237 8742 8742 0.06566889028476908 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 563.318774 1124.623 0.4785 0.00026955 -0.31054 -0.00017494 0.16796 9.4614E-05 563.3185711133268 72.159 0.4057 75.632 75.37 75.775 3.4732 0.024909 -7.616E-05 NaN 39.95 83 38 3 NaN NaN NaN NaN 0 NaN NaN 0 397760 6906 2634 4232 4237 0.06566889028476908 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 563.318774 1124.623 0.48385 0.00027256 -0.12296 -6.9268E-05 0.36088 0.00020329 563.3186920773431 72.053 0.38989 75.603 75.535 75.925 3.5505 -0.0039583 0.00013517 NaN 39.95 103 40 3 NaN NaN NaN NaN 0 NaN NaN 0 303530 6907 2634 4232 4237 0.06566889028476908 EYTRHHGGLQ 10 Unmodified _EYTRHHGGLQ_ 0 0 0 REV__MER11C_dup292|chr5:137976544-137977622:+|4.803058726890387|0.0769181486033844|5.96|151.0|21|2|sense REV__MER11C_dup292|chr5:137976544-137977622:+|4.803058726890387|0.0769181486033844|5.96|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 599.2911376953125 2 599.291611 1196.56867 NaN NaN NaN NaN NaN NaN NaN 70.207 1 73.72 73.22 74.22 3.5128 0 0 0 0.53105 1 16230 16230 6.2058 1.8765 1 + 6908 31098 4233 4238 8743 8743 -0.02175310070379055 EYTTIYHTY 9 Unmodified _EYTTIYHTY_ 0 0 0 REV__nc|ENSG00000188611|Q9NR71-2|ASAH2 REV__nc|ENSG00000188611|Q9NR71-2|ASAH2 MULTI-MSMS UPN48_class_I_Rep_2 6 595.7713012695312 2 595.771854 1189.52915 0.44483 0.00026502 0.364 0.00021686 0.80883 0.00048188 596.2737708478708 38.284 0.40916 42 41.729 42.138 3.7164 62 38 2 0 0 0 0.41259 1 6660 6660 7.2892 0 1 90782 + 6909 20974 4234 4239 8744 8744 -0.05802874864457408 EYTTIYHTY 9 Unmodified _EYTTIYHTY_ 0 0 0 REV__nc|ENSG00000188611|Q9NR71-2|ASAH2 REV__nc|ENSG00000188611|Q9NR71-2|ASAH2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 595.771854 1189.52915 0.43485 0.00025907 0.19736 0.00011758 0.63221 0.00037665 595.7715446143122 38.331 0.34248 41.991 41.836 42.179 3.6595 -0.004672 -0.00010323 NaN 7.2892 53 31 2 NaN NaN NaN NaN 0 NaN NaN 0 92353 + 6910 20974 4234 4239 -0.05802874864457408 EYVSWHYE 8 Unmodified _EYVSWHYE_ 0 0 0 REV__nc|ENSG00000170381|O15041-2|SEMA3E REV__nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS UPN47_class_I_Rep_3 4 557.2386474609375 2 556.737814 1111.46108 -0.026442 -1.4721E-05 -0.19019 -0.00010589 -0.21664 -0.00012061 556.7376738287215 40.299 0.7969 43.537 43.212 44.009 3.2372 80 50 2 0 0 0 0.82752 1 8032 8032 2.3027 0 1 66886 + 6911 20358 4235 4240 8745 8745 -0.090196997244675 EYVVGMTTVY 10 Unmodified _EYVVGMTTVY_ 0 0 0 Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|29|3|sense Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|29|3|sense Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.2767944335938 2 581.278457 1160.54236 0.45459 0.00026424 -0.37878 -0.00022018 0.075803 4.4063E-05 581.2781785462657 50.449 1.1102 53.792 53.121 54.232 3.3431 84 59 2 0 0 0 0.54466 1 11112 11112 6.2058 0.47393 1 80005 6912 33431 4236 4241 8746 8746 -0.031487600767377444 EYWPEDFF 8 Unmodified _EYWPEDFF_ 0 0 0 L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|155|2|anti-sense L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|155|2|anti-sense L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|155|2|anti-sense MSMS UPN46_class_I_Rep_3 1 566.733642578125 2 566.73474 1131.45493 NaN NaN NaN NaN NaN NaN NaN 111.76 1 111.76 111.26 112.26 0 0 0 0 0.40604 1 27566 27566 2.5775 0 1 6913 13976 4237 4242 8747 8747 -0.10554217955996137 EYYDYHRD 8 Unmodified _EYYDYHRD_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MSMS UPN48_class_I_Rep_3 7 580.7352294921875 2 580.735803 1159.45705 NaN NaN NaN NaN NaN NaN NaN 24.804 1 28.573 28.073 29.073 3.769 0 0 0 0.40746 1 2927 2927 0.69038 0 1 6914 1375 4238 4243 8748 8748 -0.11629789218204678 EYYFEDLLL 9 Unmodified _EYYFEDLLL_ 0 0 0 REV__L1M1_dup1413|chr3:23314430-23317469:-|2.60036733919628|0.0524239478809924|5.63|151.0|160|3|anti-sense REV__L1M1_dup1413|chr3:23314430-23317469:-|2.60036733919628|0.0524239478809924|5.63|151.0|160|3|anti-sense MSMS UPN48_class_I_Rep_1 5 602.7918701171875 2 602.792255 1203.56996 NaN NaN NaN NaN NaN NaN NaN 112.97 1 116.6 116.1 117.1 3.6314 0 0 0 0.39518 1 27431 27431 1.8442 0.36234 1 + 6915 24012 4239 4244 8749 8749 -0.02368533544836282 EYYIFTFW 8 Unmodified _EYYIFTFW_ 0 0 0 HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.7688598632812 2 584.771126 1167.5277 NaN NaN NaN NaN NaN NaN NaN 85.34 1 85.34 84.84 85.84 0 0 0 0 0.40746 1 20354 20354 0.69038 0 1 6916 7941 4240 4245 8750 8750 -0.04936464162574339 EYYRGWFW 8 Unmodified _EYYRGWFW_ 0 0 0 ENST00000471540.5_1_21:46697685-46703407:-|nuORF;nc|ENSG00000186866|Q9Y2G5-2|POFUT2;nc|ENSG00000186866|Q9Y2G5-1|POFUT2;ENSG00000186866|ENST00000349485|POFUT2 ENST00000471540.5_1_21:46697685-46703407:-|nuORF ENST00000471540.5_1_21:46697685-46703407:-|nuORF MSMS UPN47_class_I_Rep_3 4 603.771484375 2 603.771991 1205.52943 NaN NaN NaN NaN NaN NaN NaN 47.119 1 50.363 49.863 50.863 3.2439 0 0 0 0.40738 1 10141 10141 0.79363 0 1 6917 5168 4241 4246 8751 8751 -0.06511410353959945 EYYVKWFQ 8 Unmodified _EYYVKWFQ_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MSMS UPN47_class_I_Rep_1 2 581.7797241210938 2 581.782025 1161.5495 NaN NaN NaN NaN NaN NaN NaN 48.073 1 51.755 51.255 52.255 3.6819 0 0 0 0.40625 1 10338 10338 2.3027 0.65011 1 + 6918 18714 4242 4247 8752 8752 -0.024816594140020243 EYYYWLLF 8 Unmodified _EYYYWLLF_ 0 0 0 REV__L1ME3A_dup13006|chr15:99635463-99636354:-|1.4984061990003752|0.1043684793931497|3.84|151.0|45|2|anti-sense REV__L1ME3A_dup13006|chr15:99635463-99636354:-|1.4984061990003752|0.1043684793931497|3.84|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.7887573242188 2 598.786776 1195.559 NaN NaN NaN NaN NaN NaN NaN 70.422 1 73.882 73.382 74.382 3.4598 0 0 0 0.40625 1 16410 16410 2.3027 0.24298 1 + 6919 27995 4243 4248 8753 8753 -0.030958911284869828 FAAFIPVYSF 10 Unmodified _FAAFIPVYSF_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|87|2|anti-sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|87|2|anti-sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.3030395507812 2 581.302593 1160.59063 0.49069 0.00028524 -0.55069 -0.00032012 -0.060002 -3.4879E-05 581.3026032063351 101.75 0.26316 105.57 105.42 105.68 3.8153 93 37 3 0 0 0 0.38932 2 24045 24045;24070 20.454 1.1966 1 212090 6920 10557 4244 4249 8754;8755 8754 0.016761016254577044 FAAKAVKEI 9 Unmodified _FAAKAVKEI_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS UPN47_class_I_Rep_3 4 488.79449462890625 2 488.794935 975.575317 0.17065 8.3411E-05 -0.052744 -2.5781E-05 0.1179 5.763E-05 488.7946706617474 65.683 0.58707 68.863 68.685 69.272 3.1795 62 33 2 0 0 0 0.41259 1 15755 15755 7.2892 2.0586 1 168610 + 6921 20461 4245 4250 8756 8756 0.08655234828268021 FAASVEAFKF 10 Unmodified _FAASVEAFKF_ 0 0 0 REV__L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|277|2|anti-sense REV__L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|277|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.2788696289062 2 558.78985 1115.56515 0.41996 0.00023467 -0.10512 -5.874E-05 0.31484 0.00017593 558.7894693846345 61.975 0.61955 65.486 65.095 65.715 3.5104 123 54 3 0 0 0 0.21664 1 13672 13672 41.84 5.3334 1 189910 + 6922 29766 4246 4251 8757 8757 0.011986271030536955 FACPVVVFIF 10 Unmodified _FACPVVVFIF_ 0 0 0 REV__L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|35|2|anti-sense REV__L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|35|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.8057861328125 2 571.309364 1140.60417 0.32899 0.00018796 1.6622 0.00094962 1.9912 0.0011376 571.3099640505363 68.541 0.19492 71.906 71.797 71.992 3.3646 22 13 2 0 0 0 0.84575 1 16533 16533 4.3292 0 1 83313 + 6923 26374 4247 4252 8758 8758 0.03949636133052081 FADDMYSLY 9 Oxidation (M) _FADDM(Oxidation (M))YSLY_ FADDM(1)YSLY FADDM(52)YSLY 0 0 1 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS UPN47_class_I_Rep_3 4 570.7313842773438 2 570.73134 1139.44813 0.39941 0.00022796 -0.2386 -0.00013617 0.16081 9.1782E-05 570.7311471019742 62.157 1.0709 65.324 64.852 65.923 3.1667 168 69 4 0 0 0 0.041849 2 14730 14692;14730 52.268 23.782 1 424880 6924 4942 4248 4253 8759;8760 8760 156 -0.11601898898857144 FADDRIVY 8 Unmodified _FADDRIVY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|166|3|sense;L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|118|2|sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|166|3|sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|166|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 499.38983154296875 2 499.750724 997.486896 0.26635 0.00013311 -0.14673 -7.3328E-05 0.11962 5.9782E-05 499.7506745817996 47.899 0.47548 47.899 47.622 48.097 0 69 53 2 0 0 0 0.72333 1 9891 9891 24.674 1.5255 1 125360 6925 14441 4249 4254 8761 8761 -0.011948054821914411 FADIDVTKLA 10 Unmodified _FADIDVTKLA_ 0 0 0 REV__ENSG00000178852|ENST00000331493|EFCAB13 REV__ENSG00000178852|ENST00000331493|EFCAB13 MULTI-MSMS UPN48_class_I_Rep_2 6 546.8004760742188 2 546.800414 1091.58628 0.60261 0.00032951 -0.15487 -8.4683E-05 0.44774 0.00024482 546.8000521151288 56.204 0.66241 59.738 59.401 60.063 3.5333 96 53 2 0 0 0 0.56189 1 12143 12143 2.4985 0 1 381460 + 6926 20660 4250 4255 8762 8762 0.04414592411899321 FAEGFVRAL 9 Unmodified _FAEGFVRAL_ 0 0 0 ENSG00000177606|ENST00000371222|JUN ENSG00000177606|ENST00000371222|JUN ENSG00000177606|ENST00000371222|JUN MULTI-MSMS UPN46_class_I_Rep_3 1 505.2770690917969 2 505.276909 1008.53927 0.25286 0.00012776 0.19628 9.9174E-05 0.44914 0.00022694 505.2769237480764 65.16 0.36882 65.16 64.897 65.265 0 87 40 3 0 0 0 0.013215 3 14713 14665;14713;14728 67.838 35.052 1 437420 6927 4800 4251 4256 8763;8764;8765 8764 0.03533777651421133 FAEGFVRAL 9 Unmodified _FAEGFVRAL_ 0 0 0 ENSG00000177606|ENST00000371222|JUN ENSG00000177606|ENST00000371222|JUN ENSG00000177606|ENST00000371222|JUN MULTI-MSMS UPN46_class_I_Rep_3 1 505.2772216796875 2 505.276909 1008.53927 0.25332 0.000128 -0.17807 -8.9972E-05 0.075252 3.8023E-05 505.2767412356774 65.309 0.131 65.309 65.265 65.396 0 29 14 3 0 0 0 0.0058741 1 14757 14757 76.825 36.875 1 401080 6928 4800 4251 4256 8766 8766 0.03533777651421133 FAEGQGRAL 9 Unmodified _FAEGQGRAL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN46_class_I_Rep_3 1 474.7486877441406 2 474.748516 947.482479 0.064228 3.0492E-05 0.0046963 2.2296E-06 0.068924 3.2722E-05 474.74849293059424 33.298 0.68982 33.298 33.027 33.717 0 86 55 2 0 0 0 0.13455 2 5809 5770;5809 27.223 11.43 1 160270 6929 1655 4252 4257 8767;8768 8768 0.006637300948909797 FAEGQGRAL 9 Unmodified _FAEGQGRAL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 474.748516 947.482479 0.10785 5.1203E-05 -0.24104 -0.00011443 -0.13319 -6.3231E-05 474.74828909367426 29.202 0.18755 32.931 32.878 33.066 3.7286 -0.18341 -0.00017105 NaN 27.223 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 37036 6930 1655 4252 4257 0.006637300948909797 FAEYDWCS 8 Unmodified _FAEYDWCS_ 0 0 0 ENSG00000163637|ENST00000638394|PRICKLE2 ENSG00000163637|ENST00000638394|PRICKLE2 ENSG00000163637|ENST00000638394|PRICKLE2 MSMS UPN47_class_I_Rep_2 3 510.6903991699219 2 510.692018 1019.36948 NaN NaN NaN NaN NaN NaN NaN 118.21 1 121.69 121.19 122.19 3.4822 0 0 0 0.40604 1 28916 28916 2.5775 0 1 6931 4026 4253 4258 8769 8769 -0.13942706413320138 FAFAPIMVSF 10 Unmodified _FAFAPIMVSF_ 0 0 0 L1M5_dup18940|chr6:2295487-2296375:+|3.85320818113161|0.0502945484770504|6.26|151.0|42|1|anti-sense L1M5_dup18940|chr6:2295487-2296375:+|3.85320818113161|0.0502945484770504|6.26|151.0|42|1|anti-sense L1M5_dup18940|chr6:2295487-2296375:+|3.85320818113161|0.0502945484770504|6.26|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 565.7929077148438 2 565.291171 1128.56779 0.046152 2.6089E-05 -0.030841 -1.7434E-05 0.015311 8.6553E-06 565.2910782885267 32.085 0.9535 35.554 35.158 36.111 3.4691 113 68 2 0 0 0 0.56281 1 5449 5449 1.8442 0 1 131330 6932 9104 4254 4259 8770 8770 0.008647592363331569 FAFEGKRQ 8 Unmodified _FAFEGKRQ_ 0 0 0 REV__MLT2B2_dup469|chr3:130861304-130861731:-|1.291493543897876|0.0087257053278363|7.21|147.0|13|3|sense REV__MLT2B2_dup469|chr3:130861304-130861731:-|1.291493543897876|0.0087257053278363|7.21|147.0|13|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 491.7961730957031 2 491.758884 981.503215 0.16606 8.1661E-05 0.11278 5.5459E-05 0.27883 0.00013712 491.7588612592148 47.133 0.41472 50.77 50.518 50.932 3.6363 35 27 2 0 0 0 0.72333 1 9262 9262 10.824 10.824 1 94763 + 6933 31817 4255 4260 8771 8771 0.011723204745749172 FAFFLVQIFN 10 Unmodified _FAFFLVQIFN_ 0 0 0 L1PREC2_dup6582|chr15:30677065-30678023:+|1.875761120328785|0.0192418165065532|6.61|151.0|59|3|anti-sense L1PREC2_dup6582|chr15:30677065-30678023:+|1.875761120328785|0.0192418165065532|6.61|151.0|59|3|anti-sense L1PREC2_dup6582|chr15:30677065-30678023:+|1.875761120328785|0.0192418165065532|6.61|151.0|59|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 415.8953552246094 3 415.893737 1244.65938 -0.1372 -5.7059E-05 2.3303 0.00096917 2.1931 0.00091211 416.2281169523583 97.043 0.39126 100.65 100.56 100.95 3.6088 68 50 2 0 0 0 0.56309 1 23387 23387 0.69767 0.19171 1 67154 6934 15477 4256 4261 8772 8772 0.04683765925165062 FAFFLVQIFN 10 Unmodified _FAFFLVQIFN_ 0 0 0 L1PREC2_dup6582|chr15:30677065-30678023:+|1.875761120328785|0.0192418165065532|6.61|151.0|59|3|anti-sense L1PREC2_dup6582|chr15:30677065-30678023:+|1.875761120328785|0.0192418165065532|6.61|151.0|59|3|anti-sense L1PREC2_dup6582|chr15:30677065-30678023:+|1.875761120328785|0.0192418165065532|6.61|151.0|59|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 415.893737 1244.65938 0.098116 4.0806E-05 2.7982 0.0011637 2.8963 0.0012045 415.8956514874665 96.67 0.41255 100.58 100.37 100.78 3.9084 -0.036505 0.0002809 NaN 0.69767 76 54 2 NaN NaN NaN NaN 0 NaN NaN 0 183900 6935 15477 4256 4261 0.04683765925165062 FAFHCFFL 8 Unmodified _FAFHCFFL_ 0 0 0 ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000556039.5_1_14:53110276-53130527:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.2457885742188 2 516.244024 1030.47349 NaN NaN NaN NaN NaN NaN NaN 39.476 1 42.714 42.214 43.214 3.238 0 0 0 0.40581 1 7803 7803 2.8892 0 1 6936 7417 4257 4262 8773 8773 -0.040523347951420874 FAFIAFLL 8 Unmodified _FAFIAFLL_ 0 0 0 REV__ENSG00000163630|ENST00000478300|SYNPR REV__ENSG00000163630|ENST00000478300|SYNPR MSMS UPN47_class_I_Rep_2 3 471.2799987792969 2 471.278389 940.542226 NaN NaN NaN NaN NaN NaN NaN 83.898 1 87.31 86.81 87.81 3.4116 0 0 0 0.40581 1 20922 20922 2.8892 0 1 + 6937 19991 4258 4263 8774 8774 0.069576527762365 FAFIFFIK 8 Unmodified _FAFIFFIK_ 0 0 0 REV__L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|62|1|anti-sense REV__L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|62|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.798583984375 2 516.799489 1031.58443 NaN NaN NaN NaN NaN NaN NaN 29.576 1 33.208 32.708 33.708 3.6316 0 0 0 0.40738 1 4221 4221 0.79363 0 1 + 6938 28747 4259 4264 8775 8775 0.06989628184578578 FAFIPYAF 8 Unmodified _FAFIPYAF_ 0 0 0 L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|129|2|anti-sense L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|129|2|anti-sense L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|129|2|anti-sense MSMS UPN47_class_I_Rep_3 4 488.2425842285156 2 488.252372 974.49019 NaN NaN NaN NaN NaN NaN NaN 34.447 1 37.711 37.211 38.211 3.2639 0 0 0 0.40581 1 6265 6265 2.8892 0 1 6939 10089 4260 4265 8776 8776 0.001924893624732249 FAFLSHAWPG 10 Unmodified _FAFLSHAWPG_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MSMS UPN48_class_I_Rep_1 5 566.7840576171875 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 17.237 1 20.763 20.263 21.263 3.5261 0 0 0 0.53105 1 971 971 1.8442 1.0506 1 + 6940 20468 4261 4266 8777 8777 -0.010348199743020814 FAFLWIFY 8 Unmodified _FAFLWIFY_ 0 0 0 L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|74|2|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|74|2|anti-sense L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.789794921875 2 553.789121 1105.56369 0.40045 0.00022176 1.3483 0.00074667 1.7487 0.00096843 553.7896343989233 63.705 0.076405 67.061 67.036 67.113 3.3557 9 6 2 0 0 0 0.82752 1 15094 15094 6.3541 0 1 47630 6941 13123 4262 4267 8778 8778 0.015130378049434512 FAFMCEFR 8 Unmodified _FAFMCEFR_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MSMS UPN46_class_I_Rep_3 1 525.363037109375 2 525.730423 1049.44629 NaN NaN NaN NaN NaN NaN NaN 118.72 1 118.72 118.22 119.22 0 0 0 0 0.40738 1 29480 29480 0.79363 0 1 6942 16742 4263 4268 8779 8779 -0.07645186397826365 FAFNILDII 9 Unmodified _FAFNILDII_ 0 0 0 L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|20|1|anti-sense L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|20|1|anti-sense L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_2 3 533.294921875 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 71.914 1 75.204 74.704 75.704 3.2899 0 0 0 0.072484 1 17603 17603 30.637 5.2372 1 6943 12938 4264 4269 8780 8780 0.060921016254724236 FAFNILDII 9 Unmodified _FAFNILDII_ 0 0 0 L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|20|1|anti-sense L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|20|1|anti-sense L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 533.2947387695312 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 71.854 1 75.073 74.573 75.573 3.2188 0 0 0 0.13551 1 17656 17656 20.454 1.0146 1 6944 12938 4264 4269 8781 8781 0.060921016254724236 FAFWNTLMK 9 Unmodified _FAFWNTLMK_ 0 0 0 REV__ENSG00000076356|ENST00000367033|PLXNA2 REV__ENSG00000076356|ENST00000367033|PLXNA2 MSMS UPN48_class_I_Rep_1 5 579.3154296875 2 579.294245 1156.57394 NaN NaN NaN NaN NaN NaN NaN 33.51 1 37.03 36.53 37.53 3.5201 0 0 0 0.39428 1 5236 5236 2.0598 0.21551 1 + 6945 17865 4265 4270 8782 8782 0.0019127746786580246 FAGAHELEQM 10 Unmodified _FAGAHELEQM_ 0 0 0 ENSG00000141639|ENST00000400384|MAPK4;ENSG00000069956|ENST00000261845|MAPK6 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 MULTI-MSMS UPN47_class_I_Rep_2 3 567.2589111328125 2 566.758223 1131.50189 0.091505 5.1861E-05 0.038331 2.1724E-05 0.12984 7.3586E-05 566.7579376361447 42.437 0.49872 45.798 45.639 46.138 3.3611 46 34 2 0 0 0 0.56078 1 8690 8690 3.2813 0 1 68992 6946 1061 4266 4271 8783 8783 -0.0585968167649753 FAGDDAPRAVF 11 Unmodified _FAGDDAPRAVF_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2 ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN47_class_I_Rep_1 2 583.285888671875 2 583.285463 1164.55637 0.23982 0.00013988 0.28471 0.00016607 0.52453 0.00030595 583.2854820442265 50.366 0.43476 53.995 53.677 54.112 3.6285 32 20 2 0 0 0 0.63951 1 11046 11046 4.1895 2.3453 1 50817 6947 1146;1832 4267 4272 8784 8784 -0.019323465334537104 FAGDDAPRAVF 11 Unmodified _FAGDDAPRAVF_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2 ENSG00000075624|ENST00000646664|ACTB MULTI-MATCH UPN47_class_I_Rep_2 3 2 583.285463 1164.55637 0.46247 0.00026975 -0.052783 -3.0788E-05 0.40969 0.00023897 583.2852398116335 50.567 0.41727 53.909 53.732 54.149 3.3413 -0.08577 -0.00015699 NaN 4.1895 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 64400 6948 1146;1832 4267 4272 -0.019323465334537104 FAGDDAPRAVF 11 Unmodified _FAGDDAPRAVF_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2 ENSG00000075624|ENST00000646664|ACTB MULTI-MATCH UPN47_class_I_Rep_3 4 2 583.285463 1164.55637 0.53067 0.00030953 -0.15693 -9.1534E-05 0.37374 0.000218 583.2855303337114 50.864 0.27307 54.08 53.953 54.226 3.2163 0.085733 -0.00027848 NaN 4.1895 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 56752 6949 1146;1832 4267 4272 -0.019323465334537104 FAGGPVQR 8 Unmodified _FAGGPVQR_ 0 0 0 REV__MN1|p.R1295Dfs*26|1|0.1|ENSG00000169184|chr22:27750995-27750996|-/TC|frameshift_variant REV__MN1|p.R1295Dfs*26|1|0.1|ENSG00000169184|chr22:27750995-27750996|-/TC|frameshift_variant MSMS UPN46_class_I_Rep_3 1 416.22747802734375 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 40.023 1 40.023 39.523 40.523 0 0 0 0 0.40604 1 7740 7740 2.5775 0 1 + 6950 20302 4268 4273 8785 8785 0.017883797573290394 FAGIEMTYE 9 Unmodified _FAGIEMTYE_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MSMS UPN46_class_I_Rep_3 1 530.73486328125 2 530.736425 1059.4583 NaN NaN NaN NaN NaN NaN NaN 33.07 1 33.07 32.57 33.57 0 0 0 0 0.38478 1 5740 5740 4.3292 1.7518 1 6951 5279 4269 4274 8786 8786 -0.06905291173643491 FAGYNLND 8 Unmodified _FAGYNLND_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MSMS UPN47_class_I_Rep_3 4 456.7792663574219 2 457.20615 912.397747 NaN NaN NaN NaN NaN NaN NaN 68.892 1 72.089 71.589 72.589 3.1977 0 0 0 0.40738 1 16767 16767 0.79363 0.10326 1 6952 4873 4270 4275 8787 8787 -0.06195640441717387 FAHFIIFP 8 Unmodified _FAHFIIFP_ 0 0 0 L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|36|1|anti-sense L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|36|1|anti-sense L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|36|1|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.273638 990.532724 NaN NaN NaN NaN NaN NaN NaN 39.759 1 39.759 39.259 40.259 0 0 0 0 0.40581 1 7665 7665 2.8892 0 1 6953 13891 4271 4276 8788 8788 0.03707884490711422 FAILQTPLLVP 11 Unmodified _FAILQTPLLVP_ 0 0 0 L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|7|1|sense L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|7|1|sense L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 404.58331298828125 3 404.584792 1210.73255 NaN NaN NaN NaN NaN NaN NaN 52.367 1 55.573 55.073 56.073 3.2055 0 0 0 0.38417 1 11732 11732 0.50596 0 1 6954 8480 4272 4277 8789 8789 0.13560894647798705 FAIPLGAQGI 10 Unmodified _FAIPLGAQGI_ 0 0 0 REV__ENST00000409572.5_1_2:157186595-157198580:-|nuORF REV__ENST00000409572.5_1_2:157186595-157198580:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.77923583984375 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 51.4 1 54.738 54.238 55.238 3.3386 0 0 0 0.53105 1 11383 11383 10.074 0.72649 1 + 6955 22183 4273 4278 8790 8790 0.06630948311226348 FAISILQQL 9 Unmodified _FAISILQQL_ 0 0 0 ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186502728-186502902:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF ENSG00000156976|ENST00000323963|EIF4A2 ENSG00000156976|ENST00000323963|EIF4A2 MULTI-MSMS UPN48_class_I_Rep_2 6 516.8098754882812 2 516.808042 1031.60153 0.34892 0.00018033 0.25404 0.00013129 0.60296 0.00031161 516.8081881575782 89.342 0.17351 93.08 92.993 93.166 3.7379 23 16 2 0 0 0 0.0061372 1 21279 21279 75.761 0 1 153410 6956 3747 4274 4279 8791 8791 0.08699503999764602 FAISRLAFA 9 Unmodified _FAISRLAFA_ 0 0 0 REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|53|2|sense REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|53|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 498.75372314453125 2 498.287277 994.560001 0.28815 0.00014358 -3.6359 -0.0018117 -3.3478 -0.0016682 498.28546770837534 43.342 0.055054 43.342 43.296 43.351 0 7 5 2 0 0 0 0.11873 1 8643 8643 4.756 0 1 79928 + 6957 25835 4275 4280 8792 8792 0.06250368031089693 FAKALANVN 9 Unmodified _FAKALANVN_ 0 0 0 ENSG00000137818|ENST00000260379|RPLP1 ENSG00000137818|ENST00000260379|RPLP1 ENSG00000137818|ENST00000260379|RPLP1 MSMS UPN48_class_I_Rep_1 5 474.59716796875 2 474.269084 946.523616 NaN NaN NaN NaN NaN NaN NaN 103.05 1 106.67 106.17 107.17 3.6164 0 0 0 0.38478 1 24841 24841 4.3292 1.44 1 6958 3045 4276 4281 8793 8793 0.04821491134362077 FAKANTGNLF 10 Unmodified _FAKANTGNLF_ 0 0 0 REV__ENSG00000134775|ENST00000590592|FHOD3 REV__ENSG00000134775|ENST00000590592|FHOD3 MULTI-MSMS UPN48_class_I_Rep_3 7 541.7855834960938 2 541.785099 1081.55564 0.38168 0.00020679 0.16305 8.834E-05 0.54474 0.00029513 541.7850163177087 53.31 0.79746 56.894 56.482 57.28 3.5836 130 55 3 0 0 0 0.43106 1 11121 11121 17.113 0.1706 1 326670 + 6959 19110 4277 4282 8794 8794 0.018128588175159166 FAKHRLPV 8 Unmodified _FAKHRLPV_ 0 0 0 REV__LTR87_dup12|chr1:89688656-89689213:-|1.3567133943632763|0.0212696079100721|6.0|151.0|27|1|anti-sense REV__LTR87_dup12|chr1:89688656-89689213:-|1.3567133943632763|0.0212696079100721|6.0|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.2950744628906 2 484.295436 966.57632 NaN NaN NaN NaN NaN NaN NaN 32.133 1 35.774 35.274 36.274 3.641 0 0 0 0.40625 1 4926 4926 2.3027 0 1 + 6960 31033 4278 4283 8795 8795 0.09169493987837996 FAKISFRI 8 Unmodified _FAKISFRI_ 0 0 0 L1MEc_dup18080|chr21:45215613-45218470:-|1.3981196151557458|0.3316930475839145|2.08|151.0|170|3|anti-sense L1MEc_dup18080|chr21:45215613-45218470:-|1.3981196151557458|0.3316930475839145|2.08|151.0|170|3|anti-sense L1MEc_dup18080|chr21:45215613-45218470:-|1.3981196151557458|0.3316930475839145|2.08|151.0|170|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.29541015625 2 491.297645 980.580737 0.2662 0.00013078 -2.0959 -0.0010297 -1.8297 -0.00089891 491.29647638750953 107.6 0.11488 111.28 111.25 111.37 3.6783 28 15 3 0 0 0 0.82752 1 25437 25437 11.64 0 1 2260300 6961 13067 4279 4284 8796 8796 0.08966958410746884 FAKMPLKL 8 Unmodified _FAKMPLKL_ 0 0 0 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant;RYR1|p.V4024Gfs*7|1|0.07|ENSG00000196218|chr19:38546503-38546503|T/-|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant MSMS UPN48_class_I_Rep_2 6 474.2830810546875 2 474.290974 946.567395 NaN NaN NaN NaN NaN NaN NaN 57.654 1 61.169 60.669 61.669 3.5142 0 0 0 0.40604 1 12488 12488 2.5775 0 1 6962 5289 4280 4285 8797 8797 0.09197384307140055 FAKRISKMI 9 Unmodified _FAKRISKMI_ 0 0 0 REV__ENST00000552699.5_1_12:50156680-50156842:+|nuORF REV__ENST00000552699.5_1_12:50156680-50156842:+|nuORF MSMS UPN48_class_I_Rep_2 6 547.7454223632812 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 87.993 1 91.721 91.221 92.221 3.7279 0 0 0 0.39518 1 20943 20943 1.8442 0 1 + 6963 22972 4281 4286 8798 8798 0.10515245630199388 FAKSPSFYN 9 Unmodified _FAKSPSFYN_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS UPN48_class_I_Rep_2 6 530.7589111328125 2 530.758549 1059.50255 NaN NaN NaN NaN NaN NaN NaN 27.768 1 31.399 30.899 31.899 3.6311 0 0 0 0.38784 1 3727 3727 3.5965 0 1 + 6964 20254 4282 4287 8799 8799 -0.02482518965143754 FALAQHKCSRI 11 Unmodified _FALAQHKCSRI_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS UPN48_class_I_Rep_2 6 637.34521484375 2 637.345332 1272.67611 NaN NaN NaN NaN NaN NaN NaN 66.901 1 70.397 69.897 70.897 3.4964 0 0 0 0.38417 1 15320 15320 2.9952 0.26005 1 6965 4625 4283 4288 8800 8800 0.050679435394840766 FALFLSIDW 9 Unmodified _FALFLSIDW_ 0 0 0 REV__MLT2B4_dup1952|chr6:166991408-166991908:+|1.8143795384436177|0.1691434977081166|3.42|151.0|6|1|sense REV__MLT2B4_dup1952|chr6:166991408-166991908:+|1.8143795384436177|0.1691434977081166|3.42|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 556.2978515625 2 556.294768 1110.57498 NaN NaN NaN NaN NaN NaN NaN 86.517 1 90.133 89.633 90.633 3.6153 0 0 0 0.39518 1 21614 21614 1.8442 0.19162 1 + 6966 31825 4284 4289 8801 8801 0.024118151084394412 FALFLSIDW 9 Unmodified _FALFLSIDW_ 0 0 0 REV__MLT2B4_dup1952|chr6:166991408-166991908:+|1.8143795384436177|0.1691434977081166|3.42|151.0|6|1|sense REV__MLT2B4_dup1952|chr6:166991408-166991908:+|1.8143795384436177|0.1691434977081166|3.42|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 556.2965087890625 2 556.294768 1110.57498 NaN NaN NaN NaN NaN NaN NaN 86.792 1 90.429 89.929 90.929 3.6372 0 0 0 0.39518 1 21684 21684 1.8442 0.19162 1 + 6967 31825 4284 4289 8802 8802 0.024118151084394412 FALFLSIDW 9 Unmodified _FALFLSIDW_ 0 0 0 REV__MLT2B4_dup1952|chr6:166991408-166991908:+|1.8143795384436177|0.1691434977081166|3.42|151.0|6|1|sense REV__MLT2B4_dup1952|chr6:166991408-166991908:+|1.8143795384436177|0.1691434977081166|3.42|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 556.2958984375 2 556.294768 1110.57498 NaN NaN NaN NaN NaN NaN NaN 86.165 1 89.598 89.098 90.098 3.4329 0 0 0 0.39518 1 21434 21434 1.8442 0.19162 1 + 6968 31825 4284 4289 8803 8803 0.024118151084394412 FALFWGLK 8 Unmodified _FALFWGLK_ 0 0 0 REV__HAL1_dup1754|chr1:235188193-235189118:+|1.5126077149562502|0.0221683776748674|6.09|151.0|43|1|anti-sense REV__HAL1_dup1754|chr1:235188193-235189118:+|1.5126077149562502|0.0221683776748674|6.09|151.0|43|1|anti-sense MSMS UPN46_class_I_Rep_3 1 491.2795104980469 2 491.281463 980.548374 NaN NaN NaN NaN NaN NaN NaN 75.046 1 75.046 74.546 75.546 0 0 0 0 0.40625 1 17427 17427 2.3027 0.24298 1 + 6969 23380 4285 4290 8804 8804 0.05732171007753095 FALILALTK 9 Unmodified _FALILALTK_ 0 0 0 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 MSMS UPN46_class_I_Rep_3 1 495.32220458984375 2 495.323328 988.632104 NaN NaN NaN NaN NaN NaN NaN 24.048 1 24.048 23.548 24.548 0 0 0 0 0.39518 1 3107 3107 1.8442 0 1 6970 4700 4286 4291 8805 8805 0.13733282384782797 FALISLQHRIL 11 Unmodified _FALISLQHRIL_ 0 0 0 REV__L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|258|2|anti-sense REV__L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|258|2|anti-sense MSMS UPN47_class_I_Rep_2 3 437.602294921875 3 437.602957 1309.78704 NaN NaN NaN NaN NaN NaN NaN 51.493 1 54.831 54.331 55.331 3.3386 0 0 0 0.38417 1 11411 11411 0.50596 0 1 + 6971 29739 4287 4292 8806 8806 0.14453906519224802 FALITWIDL 9 Unmodified _FALITWIDL_ 0 0 0 REV__L1MB3_dup16931|chr22:17758376-17758925:+|3.522141623119045|0.0246776150914557|7.16|151.0|40|3|anti-sense REV__L1MB3_dup16931|chr22:17758376-17758925:+|3.522141623119045|0.0246776150914557|7.16|151.0|40|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.3099365234375 2 546.310418 1090.60628 0.4721 0.00025791 -0.45258 -0.00024725 0.01952 1.0664E-05 546.3104975934449 53.482 0.96926 56.676 56.059 57.028 3.1948 72 55 3 0 0 0 0.23311 1 12039 12039 18.135 0 1 95692 + 6972 25842 4288 4293 8807 8807 0.06460388142522788 FALRHMIY 8 Unmodified _FALRHMIY_ 0 0 0 ENST00000374928.7_1_X:56313423-56313507:+|nuORF ENST00000374928.7_1_X:56313423-56313507:+|nuORF ENST00000374928.7_1_X:56313423-56313507:+|nuORF MSMS UPN47_class_I_Rep_1 2 525.7799072265625 2 525.781305 1049.54806 NaN NaN NaN NaN NaN NaN NaN 80.245 1 83.71 83.21 84.21 3.465 0 0 0 0.39167 1 19995 19995 11.114 0 1 6973 6436 4289 4294 8808 8808 0.025264280162446084 FALRHMIY 8 Unmodified _FALRHMIY_ 0 0 0 ENST00000374928.7_1_X:56313423-56313507:+|nuORF ENST00000374928.7_1_X:56313423-56313507:+|nuORF ENST00000374928.7_1_X:56313423-56313507:+|nuORF MSMS UPN47_class_I_Rep_1 2 525.724853515625 2 525.781305 1049.54806 NaN NaN NaN NaN NaN NaN NaN 80.301 1 83.766 83.266 84.266 3.465 0 0 0 0.39167 1 20008 20008 11.114 0 1 6974 6436 4289 4294 8809 8809 0.025264280162446084 FALRHMIY 8 Unmodified _FALRHMIY_ 0 0 0 ENST00000374928.7_1_X:56313423-56313507:+|nuORF ENST00000374928.7_1_X:56313423-56313507:+|nuORF ENST00000374928.7_1_X:56313423-56313507:+|nuORF MSMS UPN47_class_I_Rep_1 2 525.7814331054688 2 525.781305 1049.54806 NaN NaN NaN NaN NaN NaN NaN 80.318 1 83.783 83.283 84.283 3.465 0 0 0 0.39167 1 20013 20013 11.114 0 1 6975 6436 4289 4294 8810 8810 0.025264280162446084 FALTFWIW 8 Unmodified _FALTFWIW_ 0 0 0 REV__L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|102|1|anti-sense REV__L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|102|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.2883911132812 2 542.286746 1082.55894 -0.091439 -4.9586E-05 2.3971 0.0012999 2.3057 0.0012503 542.7896035126805 20.871 0.043369 20.871 20.857 20.901 0 6 4 2 0 0 0 0.82752 1 2243 2243 0.69038 0 1 32260 + 6976 24899 4290 4295 8811 8811 0.02096153662182587 FALVVLGFCF 10 Unmodified _FALVVLGFCF_ 0 0 0 REV__LTR50_dup232|chr2:32381998-32382638:-|1.6329415845992563|0.0084645199007931|7.59|151.0|9|2|sense REV__LTR50_dup232|chr2:32381998-32382638:-|1.6329415845992563|0.0084645199007931|7.59|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 558.301513671875 2 558.301539 1114.58852 NaN NaN NaN NaN NaN NaN NaN 81.242 1 84.927 84.427 85.427 3.685 0 0 0 0.53105 1 19233 19233 1.8442 0 1 + 6977 30963 4291 4296 8812 8812 0.03581349616024454 FALYRNYR 8 Unmodified _FALYRNYR_ 0 0 0 REV__ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|2|intron REV__ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|2|intron MSMS UPN46_class_I_Rep_3 1 551.7936401367188 2 551.793258 1101.57196 NaN NaN NaN NaN NaN NaN NaN 73.781 1 73.781 73.281 74.281 0 0 0 0 0.40738 1 17115 17115 0.79363 0 1 + 6978 20089 4292 4297 8813 8813 0.025239847742795973 FANFVEFQI 9 Unmodified _FANFVEFQI_ 0 0 0 REV__L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|135|2|anti-sense REV__L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|135|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.782470703125 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 66.076 1 69.528 69.028 70.028 3.4516 0 0 0 0.39036 1 15082 15082 2.9952 0 1 + 6979 24805 4293 4298 8814 8814 -0.0027365941400603333 FANYPNIL 8 Unmodified _FANYPNIL_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|127|3|anti-sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|127|3|anti-sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|127|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3266906738281 2 476.25036 950.486168 NaN NaN NaN NaN NaN NaN NaN 35.231 1 35.231 34.731 35.731 0 0 0 0 0.40404 1 6389 6389 5.2307 0 1 6980 11513 4294 4299 8815 8815 0.00894399868752771 FAPHCSRL 8 Unmodified _FAPHCSRL_ 0 0 0 REV__HERVL-int_dup373|chr3:17591266-17593200:+|2.843895892111384|0.0234998968765916|6.92|151.0|57|3|sense REV__HERVL-int_dup373|chr3:17591266-17593200:+|2.843895892111384|0.0234998968765916|6.92|151.0|57|3|sense MSMS UPN46_class_I_Rep_3 1 465.75042724609375 2 465.734354 929.454156 NaN NaN NaN NaN NaN NaN NaN 47.601 1 47.601 47.101 48.101 0 0 0 0 0.40643 1 9857 9857 2.0598 0 1 + 6981 23885 4295 4300 8816 8816 -0.013392910860488882 FAPHVHVSVK 10 Unmodified _FAPHVHVSVK_ 0 0 0 REV__nc|ENSG00000165124|Q4LDE5-2|SVEP1 REV__nc|ENSG00000165124|Q4LDE5-2|SVEP1 MSMS UPN48_class_I_Rep_1 5 560.8355712890625 2 560.816733 1119.61891 NaN NaN NaN NaN NaN NaN NaN 70.981 1 74.447 73.947 74.947 3.466 0 0 0 0.53105 1 16567 16567 3.5965 0.70727 1 + 6982 20104 4296 4301 8817 8817 0.06388844325419996 FAQLGKLRF 9 Unmodified _FAQLGKLRF_ 0 0 0 ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL MULTI-MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 0.32669 0.00017652 0.3123 0.00016874 0.63898 0.00034526 540.3216414878053 46.7 0.039406 46.7 46.68 46.72 0 10 2 5 0 0 0 0.48846 1 9597 9597 1.8442 0 1 3437500 6983 5763 4297 4302 8818 8818 0.09258032330808419 FARANQTR 8 Unmodified _FARANQTR_ 0 0 0 L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|71|3|sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|71|3|sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|71|3|sense MSMS UPN46_class_I_Rep_3 1 482.69512939453125 2 482.259582 962.504612 NaN NaN NaN NaN NaN NaN NaN 100.64 1 100.64 100.14 101.14 0 0 0 0 0.40746 1 24538 24538 0.69038 0 1 6984 9438 4298 4303 8819 8819 0.02185954563310588 FARGAKVVLY 10 Unmodified _FARGAKVVLY_ 0 0 0 nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1 nc|ENSG00000095713|Q9NQ79-3|CRTAC1 nc|ENSG00000095713|Q9NQ79-3|CRTAC1 MULTI-MSMS UPN47_class_I_Rep_2 3 562.3345947265625 2 562.334759 1122.65496 0.63501 0.00035709 0.1637 9.2057E-05 0.79871 0.00044914 562.3343733601961 109.34 0.88783 112.87 112.69 113.58 3.5307 299 123 3 0 0 0 0.54466 1 26717 26717 6.2058 2.2614 1 10055000 6985 1416 4299 4304 8820 8820 0.09854301502286944 FARKRGNV 8 Unmodified _FARKRGNV_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MSMS UPN47_class_I_Rep_1 2 474.2823486328125 2 474.280318 946.546083 NaN NaN NaN NaN NaN NaN NaN 109.61 1 113.21 112.71 113.71 3.6046 0 0 0 0.39996 1 27047 27047 7.9102 2.6795 1 6986 3749 4300 4305 8821 8821 0.07067135322654394 FARKWGKV 8 Unmodified _FARKWGKV_ 0 0 0 REV__L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|107|3|sense REV__L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|107|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2956848144531 2 496.295436 990.57632 0.25251 0.00012532 0.064855 3.2187E-05 0.31736 0.00015751 496.2954832676029 39.341 0.083931 39.341 39.306 39.39 0 11 6 3 0 0 0 0.82752 1 7555 7555 2.3027 0 1 1296200 + 6987 30641 4301 4306 8822 8822 0.08065493987851369 FARKWGKV 8 Unmodified _FARKWGKV_ 0 0 0 REV__L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|107|3|sense REV__L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|107|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955627441406 2 496.295436 990.57632 0.30697 0.00015235 0.071549 3.5509E-05 0.37852 0.00018786 496.29546638745705 109.53 0.73842 109.53 109.37 110.11 0 163 60 3 0 0 0 0.82752 1 26988 26988 4.756 4.756 1 20095000 + 6988 30641 4301 4306 8823 8823 0.08065493987851369 FARKWGKV 8 Unmodified _FARKWGKV_ 0 0 0 REV__L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|107|3|sense REV__L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|107|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.774658203125 2 496.295436 990.57632 0.28772 0.00014279 0.25084 0.00012449 0.53856 0.00026728 496.2955268841798 40.934 0.038849 40.934 40.922 40.961 0 4 2 2 0 0 0 0.72333 1 7979 7979 9.3474 8.6571 1 2648900 + 6989 30641 4301 4306 8824 8824 0.08065493987851369 FARYGLQEY 9 Unmodified _FARYGLQEY_ 0 0 0 REV__ENSG00000188338|ENST00000614032|SLC38A3 REV__ENSG00000188338|ENST00000614032|SLC38A3 MSMS UPN47_class_I_Rep_2 3 573.7828979492188 2 573.782556 1145.55056 NaN NaN NaN NaN NaN NaN NaN 52.806 1 56.132 55.632 56.632 3.3266 0 0 0 0.38639 1 11805 11805 3.9444 1.0552 1 + 6990 20966 4302 4307 8825 8825 -0.016394450450889053 FASIPSHLV 9 Unmodified _FASIPSHLV_ 0 0 0 L1MB8_dup13571|chr16:12713779-12715313:-|1.0051527069669488|0.0082158234073998|6.93|151.0|95|3|anti-sense L1MB8_dup13571|chr16:12713779-12715313:-|1.0051527069669488|0.0082158234073998|6.93|151.0|95|3|anti-sense L1MB8_dup13571|chr16:12713779-12715313:-|1.0051527069669488|0.0082158234073998|6.93|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7856140136719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 25.411 1 29.048 28.548 29.548 3.6363 0 0 0 0.39518 1 3091 3091 1.8442 0 1 6991 10941 4303 4308 8826 8826 0.0423837527713431 FASLREQPV 9 Unmodified _FASLREQPV_ 0 0 0 REV__L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|324|3|anti-sense REV__L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|324|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.7852783203125 2 523.785099 1045.55564 0.34478 0.00018059 -1.2471 -0.00065321 -0.90232 -0.00047262 523.7847059030838 44.803 0.41248 48.44 48.262 48.675 3.6372 41 26 2 0 0 0 0.31407 1 8548 8548 13.042 0 1 79400 + 6992 24030 4304 4309 8827 8827 0.03468858817495857 FASLREQPV 9 Unmodified _FASLREQPV_ 0 0 0 REV__L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|324|3|anti-sense REV__L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|324|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 523.785099 1045.55564 0.29133 0.00015259 -1.7571 -0.00092035 -1.4658 -0.00076776 523.7845298837523 44.877 0.26878 48.391 48.262 48.531 3.5132 -0.024685 -0.00029689 NaN 13.042 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 66090 + 6993 24030 4304 4309 0.03468858817495857 FASLREQPV 9 Unmodified _FASLREQPV_ 0 0 0 REV__L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|324|3|anti-sense REV__L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|324|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 523.785099 1045.55564 0.34478 0.00018059 -1.2471 -0.00065321 -0.90232 -0.00047262 523.7847059030838 44.803 0.41248 48.44 48.262 48.675 3.6372 0.024685 0.00023739 NaN 13.042 41 26 2 NaN NaN NaN NaN 0 NaN NaN 0 79400 + 6994 24030 4304 4309 0.03468858817495857 FATHKPSLF 9 Unmodified _FATHKPSLF_ 0 0 0 REV__L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|102|1|anti-sense REV__L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|102|1|anti-sense MSMS UPN48_class_I_Rep_2 6 524.2850341796875 2 524.284734 1046.55492 NaN NaN NaN NaN NaN NaN NaN 44.532 1 48.294 47.794 48.794 3.7617 0 0 0 0.36505 1 8497 8497 7.2892 0.56607 1 + 6995 30574 4305 4310 8828 8828 0.03350064168466815 FATLHRTL 8 Unmodified _FATLHRTL_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS UPN47_class_I_Rep_1 2 479.7767028808594 2 479.777077 957.5396 -0.11797 -5.6602E-05 0.14765 7.0839E-05 0.029675 1.4238E-05 479.77701064152956 46.469 0.65767 50.169 49.942 50.6 3.6999 68 43 2 0 0 0 0.82752 1 9815 9815 0.79363 0 1 131990 + 6996 17556 4306 4311 8829 8829 0.05913197371296519 FAVKQRKD 8 Unmodified _FAVKQRKD_ 0 0 0 REV__MER4A_dup249|chr6:2338665-2339050:-|1.1045649980709562|0.021122738138819|5.71|151.0|28|3|anti-sense REV__MER4A_dup249|chr6:2338665-2339050:-|1.1045649980709562|0.021122738138819|5.71|151.0|28|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2953796386719 2 496.287808 990.561064 NaN NaN NaN NaN NaN NaN NaN 45.392 1 45.392 44.892 45.892 0 0 0 0 0.40404 1 9226 9226 5.2307 0.47466 1 + 6997 31345 4307 4312 8830 8830 0.06540582399986761 FAVPLSSAAF 10 Unmodified _FAVPLSSAAF_ 0 0 0 REV__nc|ENSG00000205683|Q92784-3|DPF3 REV__nc|ENSG00000205683|Q92784-3|DPF3 MSMS UPN48_class_I_Rep_1 5 505.2708740234375 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.833 1 83.382 82.882 83.882 3.5487 0 0 0 0.53105 1 19069 19069 20.454 0 1 + 6998 32098 4308 4313 8831 8831 0.024109555572863428 FAWFLWCL 8 Unmodified _FAWFLWCL_ 0 0 0 REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|139|2|anti-sense REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|139|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.2594604492188 2 543.267499 1084.52044 NaN NaN NaN NaN NaN NaN NaN 27.278 1 30.909 30.409 31.409 3.6311 0 0 0 0.40738 1 3591 3591 0.79363 0 1 + 6999 26629 4309 4314 8832 8832 -0.018434752440043667 FAWHGFSRPG 10 Unmodified _FAWHGFSRPG_ 0 0 0 REV__ENST00000594676.1_1_19:40023193-40023817:+|nuORF REV__ENST00000594676.1_1_19:40023193-40023817:+|nuORF MSMS UPN47_class_I_Rep_2 3 581.2850341796875 2 581.283057 1160.55156 NaN NaN NaN NaN NaN NaN NaN 46.513 1 49.864 49.364 50.364 3.3515 0 0 0 0.53105 1 9901 9901 1.4819 0.68827 1 + 7000 23189 4310 4315 8833 8833 -0.02229185885539664 FAWHYKKC 8 Unmodified _FAWHYKKC_ 0 0 0 REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|83|3|anti-sense REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7652587890625 2 541.765655 1081.51676 NaN NaN NaN NaN NaN NaN NaN 118.59 1 122.2 121.7 122.7 3.6189 0 0 0 0.40604 1 28925 28925 2.5775 0 1 + 7001 25682 4311 4316 8834 8834 -0.020741450178547893 FAWHYKKC 8 Unmodified _FAWHYKKC_ 0 0 0 REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|83|3|anti-sense REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7647705078125 2 541.765655 1081.51676 NaN NaN NaN NaN NaN NaN NaN 119.24 1 122.86 122.36 123.36 3.6189 0 0 0 0.40738 1 29098 29098 0.79363 0.10326 1 + 7002 25682 4311 4316 8835 8835 -0.020741450178547893 FAWRKISN 8 Unmodified _FAWRKISN_ 0 0 0 REV__MSTD_dup3122|chr6:87505514-87505885:-|1.0760758413380178|0.267634770456571|2.01|151.0|5|2|sense REV__MSTD_dup3122|chr6:87505514-87505885:-|1.0760758413380178|0.267634770456571|2.01|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 511.28082275390625 2 511.282526 1020.5505 NaN NaN NaN NaN NaN NaN NaN 25.428 1 29.064 28.564 29.564 3.6363 0 0 0 0.40625 1 3096 3096 2.3027 0 1 + 7003 31916 4312 4317 8836 8836 0.041045997455512406 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN46_class_I_Rep_3 1 546.2561645507812 2 546.25584 1090.49713 0.30052 0.00016416 0.30019 0.00016398 0.60071 0.00032814 546.2559127501672 57.357 0.52168 57.357 57.083 57.604 0 134 54 3 0 0 0 0.021334 3 12558 12524;12558;12595 62.573 26.446 1 952520 7004 5530 4313 4318 8837;8838;8839 8838 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN47_class_I_Rep_1 2 546.2555541992188 2 546.25584 1090.49713 0.34302 0.00018737 -0.53416 -0.00029179 -0.19115 -0.00010441 546.2554175497785 52.438 0.95106 55.997 55.761 56.712 3.5585 135 67 3 0 0 0 0.097406 3 11788 11706;11749;11788 34.402 18.555 1 583080 7005 5530 4313 4318 8840;8841;8842 8842 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN47_class_I_Rep_2 3 546.256103515625 2 546.25584 1090.49713 0.48976 0.00026753 -0.54392 -0.00029712 -0.054161 -2.9586E-05 546.2554067323479 52.699 1.0244 56.032 55.812 56.837 3.3332 164 72 3 0 0 0 0.095207 2 11892 11771;11892 34.932 17.819 1 515490 7006 5530 4313 4318 8843;8844 8844 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN47_class_I_Rep_3 4 546.255615234375 2 546.25584 1090.49713 0.48638 0.00026569 -0.31966 -0.00017462 0.16672 9.107E-05 546.2555237838386 52.891 0.89024 56.086 55.825 56.716 3.1948 138 56 3 0 0 0 0.12795 5 11983 11849;11894;11977;11983;12065 28.495 12.241 1 486860 7007 5530 4313 4318 8845;8846;8847;8848;8849 8848 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN48_class_I_Rep_1 5 546.2559204101562 2 546.25584 1090.49713 0.45927 0.00025088 -0.1163 -6.353E-05 0.34297 0.00018735 546.2556727198925 52.624 1.0448 56.143 55.836 56.881 3.5192 173 81 3 0 0 0 0.015319 5 10952 10876;10912;10952;10990;11028 66.457 37.375 1 893260 7008 5530 4313 4318 8850;8851;8852;8853;8854 8852 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN48_class_I_Rep_2 6 546.2559204101562 2 546.25584 1090.49713 0.52487 0.00028671 -0.20075 -0.00010966 0.32412 0.00017705 546.255667409594 52.475 0.95199 56.114 55.805 56.757 3.639 150 70 3 0 0 0 0.022868 4 10931 10836;10853;10891;10931 61.602 21.652 1 953690 7009 5530 4313 4318 8855;8856;8857;8858 8858 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN48_class_I_Rep_3 7 546.2559814453125 2 546.25584 1090.49713 0.33165 0.00018117 0.063698 3.4795E-05 0.39535 0.00021596 546.255763160039 52.542 0.91366 56.14 55.809 56.723 3.5979 178 68 4 0 0 0 0.0063213 5 10860 10790;10822;10860;10901;10943 89.401 41.652 1 797080 7010 5530 4313 4318 8859;8860;8861;8862;8863 8861 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MATCH UPN47_class_I_Rep_2 3 2 546.25584 1090.49713 0.48946 0.00026737 -0.96533 -0.00052732 -0.47587 -0.00025995 546.7567696584181 52.46 0.052673 55.793 55.767 55.819 3.3332 -0.079783 -0.00037981 NaN 34.402 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 200700 7011 5530 4313 4318 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MATCH UPN47_class_I_Rep_3 4 2 546.25584 1090.49713 0.49499 0.00027039 -2.3789 -0.0012995 -1.8839 -0.0010291 546.2544137554829 52.624 0.054123 55.83 55.782 55.836 3.2055 -0.043523 -0.0019241 NaN 34.402 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 133010 7012 5530 4313 4318 -0.04450242547613925 FAYFFFRN 8 Unmodified _FAYFFFRN_ 0 0 0 REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|161|3|anti-sense REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|161|3|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2713623046875 2 556.271627 1110.5287 NaN NaN NaN NaN NaN NaN NaN 22.926 1 26.63 26.13 27.13 3.7042 0 0 0 0.40738 1 2749 2749 0.79363 0 1 + 7013 24253 4314 4319 8864 8864 -0.02214205002997005 FAYFHYML 8 Unmodified _FAYFHYML_ 0 0 0 REV__L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|186|2|anti-sense REV__L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|186|2|anti-sense MSMS UPN47_class_I_Rep_3 4 546.255126953125 2 546.254588 1090.49462 NaN NaN NaN NaN NaN NaN NaN 53.585 1 56.779 56.279 57.279 3.1948 0 0 0 0.4032 1 12100 12100 6.3541 0 1 + 7014 30445 4315 4320 8865 8865 -0.04700369486272393 FAYPAIRY 8 Unmodified _FAYPAIRY_ 0 0 0 ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3 ENST00000496863.5_1_1:155679570-155695280:+|nuORF ENST00000496863.5_1_1:155679570-155695280:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.7666320800781 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 55.383 1 58.891 58.391 59.391 3.5082 0 0 0 0.40404 1 11816 11816 5.2307 0 1 7015 2770 4316 4321 8866 8866 0.018023926227101583 FAYTQLSDF 9 Unmodified _FAYTQLSDF_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS UPN47_class_I_Rep_2 3 547.2457275390625 2 546.25584 1090.49713 0.48976 0.00026753 -0.54392 -0.00029712 -0.054161 -2.9586E-05 546.2554067323479 52.699 1.0244 56.032 55.812 56.837 3.3332 164 72 3 0 0 0 0.26948 2 11815 11815;11869 15.847 0 1 515490 + 7016 17819 4317 4322 8867;8868 8867 -0.044502425476366625 FCAMSKLT 8 Unmodified _FCAMSKLT_ 0 0 0 L1MEc_dup4873|chr4:73202521-73203114:+|1.5690188596557249|0.0945526446438943|4.05|151.0|29|1|anti-sense L1MEc_dup4873|chr4:73202521-73203114:+|1.5690188596557249|0.0945526446438943|4.05|151.0|29|1|anti-sense L1MEc_dup4873|chr4:73202521-73203114:+|1.5690188596557249|0.0945526446438943|4.05|151.0|29|1|anti-sense MSMS UPN46_class_I_Rep_3 1 450.7196350097656 2 450.719524 899.424495 NaN NaN NaN NaN NaN NaN NaN 91.007 1 91.007 90.507 91.507 0 0 0 0 0.40625 1 21961 21961 2.3027 0 1 7017 13111 4318 4323 8869 8869 -0.029239911463946555 FCATFLHA 8 Unmodified _FCATFLHA_ 0 0 0 REV__Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|36|2|sense REV__Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|36|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 454.7170715332031 2 455.218006 908.421459 0.16136 7.3455E-05 0.97789 0.00044515 1.1393 0.00051861 455.21837084036616 81.536 0.50117 85.193 84.969 85.47 3.6567 75 61 2 0 0 0 0.72333 1 19358 19358 5.2307 5.2307 1 229300 + 7018 32474 4319 4324 8870 8870 -0.03641498208912708 FCAWSWVSE 9 Unmodified _FCAWSWVSE_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|216|1|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|216|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.735595703125 2 557.73676 1113.45897 NaN NaN NaN NaN NaN NaN NaN 24.23 1 24.23 23.73 24.73 0 0 0 0 0.38478 1 3155 3155 4.3292 0 1 + 7019 29981 4320 4325 8871 8871 -0.09322451733942216 FCCCCFFGFY 10 Unmodified _FCCCCFFGFY_ 0 0 0 REV__L1PB1_dup6109|chr7:139832231-139833400:+|6.560012187730878|0.0324256126264072|7.66|151.0|43|1|anti-sense REV__L1PB1_dup6109|chr7:139832231-139833400:+|6.560012187730878|0.0324256126264072|7.66|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 620.2078857421875 2 620.210152 1238.40575 NaN NaN NaN NaN NaN NaN NaN 50.117 1 53.745 53.245 54.245 3.6285 0 0 0 0.53105 1 10962 10962 1.8442 1.0506 1 + 7020 30459 4321 4326 8872 8872 -0.20391612104094747 FCCCCRCCCCC 11 Unmodified _FCCCCRCCCCC_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|308|2|anti-sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|308|2|anti-sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|308|2|anti-sense MSMS UPN46_class_I_Rep_3 1 625.2830810546875 2 625.138651 1248.26275 NaN NaN NaN NaN NaN NaN NaN 63.009 1 63.009 62.509 63.509 0 0 0 0 0.38417 1 14124 14124 0 0 1 7021 14971 4322 4327 8873 8873 -0.3514509341680423 FCCCCRCCCCC 11 Unmodified _FCCCCRCCCCC_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|308|2|anti-sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|308|2|anti-sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|308|2|anti-sense MSMS UPN46_class_I_Rep_3 1 624.8397216796875 2 625.138651 1248.26275 NaN NaN NaN NaN NaN NaN NaN 91.375 1 91.375 90.875 91.875 0 0 0 0 0.38417 1 22069 22069 0 0 1 7022 14971 4322 4327 8874 8874 -0.3514509341680423 FCCCPCCYCCS 11 Unmodified _FCCCPCCYCCS_ 0 0 0 ENST00000346964.6_2_3:196770181-196770280:-|nuORF ENST00000346964.6_2_3:196770181-196770280:-|nuORF ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS UPN47_class_I_Rep_2 3 617.6538696289062 2 617.652972 1233.29139 NaN NaN NaN NaN NaN NaN NaN 117.32 1 120.81 120.31 121.31 3.4891 0 0 0 0.38417 1 28667 28667 0 0 1 7023 6263 4323 4328 8875 8875 -0.3159232924435855 FCCCPCCYCCS 11 Unmodified _FCCCPCCYCCS_ 0 0 0 ENST00000346964.6_2_3:196770181-196770280:-|nuORF ENST00000346964.6_2_3:196770181-196770280:-|nuORF ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS UPN47_class_I_Rep_3 4 617.6532592773438 2 617.652972 1233.29139 NaN NaN NaN NaN NaN NaN NaN 119.37 1 122.79 122.29 123.29 3.4157 0 0 0 0.38417 1 29478 29478 0 0 1 7024 6263 4323 4328 8876 8876 -0.3159232924435855 FCCWHFKCSC 10 Unmodified _FCCWHFKCSC_ 0 0 0 REV__nc|ENSG00000162552|P56705-2|WNT4 REV__nc|ENSG00000162552|P56705-2|WNT4 MSMS UPN47_class_I_Rep_3 4 421.824462890625 3 421.823725 1262.44935 NaN NaN NaN NaN NaN NaN NaN 111.32 1 114.84 114.34 115.34 3.5207 0 0 0 0.53105 1 27322 27322 0 0 1 + 7025 19927 4324 4329 8877 8877 -0.17138002606952796 FCDMFAWFW 9 Unmodified _FCDMFAWFW_ 0 0 0 L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|64|2|anti-sense L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|64|2|anti-sense L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|64|2|anti-sense MSMS UPN47_class_I_Rep_3 4 626.7503051757812 2 626.751356 1251.48816 NaN NaN NaN NaN NaN NaN NaN 16.407 1 19.768 19.268 20.268 3.3619 0 0 0 0.40038 1 1018 1018 0.6015 0 1 7026 10984 4325 4330 8878 8878 -0.12752630709314872 FCEVKAKRF 9 Unmodified _FCEVKAKRF_ 0 0 0 Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|25|2|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|25|2|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|25|2|sense MSMS UPN48_class_I_Rep_3 7 564.3038330078125 2 564.305144 1126.59573 NaN NaN NaN NaN NaN NaN NaN 36.085 1 39.751 39.251 40.251 3.6667 0 0 0 0.39428 1 5930 5930 2.0598 0 1 7027 477 4326 4331 8879 8879 0.03750082216447481 FCEVKAKRF 9 Unmodified _FCEVKAKRF_ 0 0 0 Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|25|2|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|25|2|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|25|2|sense MSMS UPN48_class_I_Rep_3 7 564.3051147460938 2 564.305144 1126.59573 NaN NaN NaN NaN NaN NaN NaN 37.028 1 40.691 40.191 41.191 3.663 0 0 0 0.39428 1 6195 6195 2.0598 0 1 7028 477 4326 4331 8880 8880 0.03750082216447481 FCFKFFLT 8 Unmodified _FCFKFFLT_ 0 0 0 REV__L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense REV__L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_1 2 526.7647094726562 2 526.767332 1051.52011 NaN NaN NaN NaN NaN NaN NaN 52.359 1 55.917 55.417 56.417 3.5585 0 0 0 0.40625 1 11643 11643 2.3027 0 1 + 7029 28486 4327 4332 8881 8881 -0.003588949638469785 FCFLHLEF 8 Unmodified _FCFLHLEF_ 0 0 0 HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|13|2|sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|13|2|sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|13|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 528.8133544921875 2 528.254588 1054.49462 0.3468 0.0001832 1.9145 0.0010114 2.2613 0.0011946 528.2554275154558 73.859 0.17783 77.34 77.233 77.411 3.4812 24 17 2 0 0 0 0.72333 1 17434 17434 26.341 0 1 121100 7030 8302 4328 4333 8882 8882 -0.030443694862697157 FCFLSWAFSAI 11 Unmodified _FCFLSWAFSAI_ 0 0 0 L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|347|3|anti-sense L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|347|3|anti-sense L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|347|3|anti-sense MSMS UPN48_class_I_Rep_2 6 646.31396484375 2 646.312635 1290.61072 NaN NaN NaN NaN NaN NaN NaN 58.407 1 61.906 61.406 62.406 3.4987 0 0 0 0.38417 1 12718 12718 2.7352 0.64919 1 7031 14556 4329 4334 8883 8883 -0.022964707062101297 FCFPHIEFY 9 Unmodified _FCFPHIEFY_ 0 0 0 REV__L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|50|1|anti-sense REV__L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_3 4 601.77392578125 2 601.770603 1201.52665 NaN NaN NaN NaN NaN NaN NaN 76.75 1 80.019 79.519 80.519 3.269 0 0 0 0.36505 1 19091 19091 7.2892 1.5574 1 + 7032 27473 4330 4335 8884 8884 -0.0660500180310919 FCFSPMVYHY 10 Unmodified _FCFSPMVYHY_ 0 0 0 REV__L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|159|1|anti-sense REV__L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|159|1|anti-sense MSMS UPN47_class_I_Rep_1 2 647.2728881835938 2 647.275195 1292.53584 NaN NaN NaN NaN NaN NaN NaN 43.081 1 46.768 46.268 47.268 3.6875 0 0 0 0.53105 1 8823 8823 1.4819 0.15237 1 + 7033 30031 4331 4336 8885 8885 -0.09872976509109321 FCFVFGQF 8 Unmodified _FCFVFGQF_ 0 0 0 REV__L1P4_dup2103|chrX:72417127-72418730:+|3.604601969950515|0.0930856558784156|5.28|151.0|99|3|anti-sense REV__L1P4_dup2103|chrX:72417127-72418730:+|3.604601969950515|0.0930856558784156|5.28|151.0|99|3|anti-sense MSMS UPN46_class_I_Rep_3 1 497.76513671875 2 497.728206 993.44186 NaN NaN NaN NaN NaN NaN NaN 113.65 1 113.65 113.15 114.15 0 0 0 0 0.40738 1 28073 28073 0.79363 0 1 + 7034 28907 4332 4337 8886 8886 -0.05512327549070051 FCFYCYCCP 9 Unmodified _FCFYCYCCP_ 0 0 0 L1MB5_dup3283|chr7:158812352-158813082:+|4.190478613688243|0.051002639443286|6.36|151.0|40|3|anti-sense L1MB5_dup3283|chr7:158812352-158813082:+|4.190478613688243|0.051002639443286|6.36|151.0|40|3|anti-sense L1MB5_dup3283|chr7:158812352-158813082:+|4.190478613688243|0.051002639443286|6.36|151.0|40|3|anti-sense MSMS UPN46_class_I_Rep_3 1 574.6897583007812 2 574.689052 1147.36355 NaN NaN NaN NaN NaN NaN NaN 25.362 1 25.362 24.862 25.862 0 0 0 0 0.40038 1 3467 3467 0.6015 0.076735 1 7035 10610 4333 4338 8887 8887 -0.204235875124823 FCGCCEWDCF 10 Unmodified _FCGCCEWDCF_ 0 0 0 L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|185|3|anti-sense L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|185|3|anti-sense L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|185|3|anti-sense MSMS UPN47_class_I_Rep_3 4 404.7920227050781 3 404.792091 1211.35444 NaN NaN NaN NaN NaN NaN NaN 114.63 1 118.11 117.61 118.61 3.4802 0 0 0 0.53105 1 28156 28156 0 0 1 7036 13977 4334 4339 8888 8888 -0.24277980868828308 FCGCGYGC 8 Unmodified _FCGCGYGC_ 0 0 0 ENSG00000186930|ENST00000334897|KRTAP6-2 ENSG00000186930|ENST00000334897|KRTAP6-2 ENSG00000186930|ENST00000334897|KRTAP6-2 MSMS UPN47_class_I_Rep_3 4 405.123291015625 2 405.124402 808.234252 NaN NaN NaN NaN NaN NaN NaN 35.56 1 38.815 38.315 39.315 3.2547 0 0 0 0.40798 1 6601 6601 0 0 1 7037 5176 4335 4340 8889 8889 -0.17753601080278258 FCGDGHSS 8 Unmodified _FCGDGHSS_ 0 0 0 HERVK9-int_dup573|chr16:10419447-10422962:-|3.153077132551644|0.1634055803301219|4.27|151.0|31|1|sense;HERVK9-int_dup367|chr9:131683650-131685118:+|1.2107702984255329|0.1138562023128146|3.41|149.0|28|2|sense;HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|150|3|sense;HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|103|2|sense HERVK9-int_dup573|chr16:10419447-10422962:-|3.153077132551644|0.1634055803301219|4.27|151.0|31|1|sense HERVK9-int_dup573|chr16:10419447-10422962:-|3.153077132551644|0.1634055803301219|4.27|151.0|31|1|sense MSMS UPN48_class_I_Rep_2 6 405.14581298828125 2 405.147778 808.281002 NaN NaN NaN NaN NaN NaN NaN 88.835 1 92.573 92.073 93.073 3.7379 0 0 0 0.40746 1 21147 21147 0.69038 0 1 7038 8306 4336 4341 8890 8890 -0.13080701933120054 FCHFFGYVL 9 Unmodified _FCHFFGYVL_ 0 0 0 L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|132|2|anti-sense L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|132|2|anti-sense L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|132|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.268798828125 2 566.767863 1131.52117 0.045896 2.6013E-05 -1.3882 -0.00078678 -1.3423 -0.00076077 566.7669152448327 34.163 0.59403 37.603 37.252 37.846 3.4398 60 39 2 0 0 0 0.44858 1 6056 6056 5.2307 0.90143 1 120170 7039 8788 4337 4342 8891 8891 -0.039326805949258414 FCHFLYEK 8 Unmodified _FCHFLYEK_ 0 0 0 REV__L1MC3_dup8099|chr10:42607863-42609137:+|1.290225449559906|0.1805649163677801|2.84|151.0|59|1|anti-sense REV__L1MC3_dup8099|chr10:42607863-42609137:+|1.290225449559906|0.1805649163677801|2.84|151.0|59|1|anti-sense MSMS UPN46_class_I_Rep_3 1 543.7432250976562 2 543.757495 1085.50044 NaN NaN NaN NaN NaN NaN NaN 119.61 1 119.61 119.11 120.11 0 0 0 0 0.40738 1 29736 29736 0.79363 0 1 + 7040 26782 4338 4343 8892 8892 -0.03889270974605097 FCHGAAPP 8 Unmodified _FCHGAAPP_ 0 0 0 ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 400.6829528808594 2 400.181423 798.348294 -0.41263 -0.00016513 0.24974 9.9939E-05 -0.16289 -6.5186E-05 400.18139941202674 109.17 0.16094 112.7 112.64 112.8 3.5307 27 21 2 0 0 0 0.82752 1 26566 26566 0.79363 0.79363 1 1144800 7041 7520 4339 4344 8893 8893 -0.05894626931512903 FCHGAAPP 8 Unmodified _FCHGAAPP_ 0 0 0 ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 400.181423 798.348294 0.094691 3.7894E-05 -0.42551 -0.00017028 -0.33082 -0.00013239 400.1811104295937 109.18 0.16187 112.79 112.68 112.84 3.6046 0.0078166 -0.00012363 NaN 0.79363 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 981900 7042 7520 4339 4344 -0.05894626931512903 FCHGAAPP 8 Unmodified _FCHGAAPP_ 0 0 0 ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 400.181423 798.348294 -0.61137 -0.00024466 0.37989 0.00015203 -0.23148 -9.2634E-05 400.1814880046683 109.2 0.11202 112.74 112.65 112.77 3.5347 -0.040944 0.00052098 NaN 0.79363 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 886900 7043 7520 4339 4344 -0.05894626931512903 FCHGAAPP 8 Unmodified _FCHGAAPP_ 0 0 0 ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF ENST00000572980.5_1_16:10867935-10868890:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 400.181423 798.348294 0.082158 3.2878E-05 -0.4053 -0.0001622 -0.32315 -0.00012932 400.18119698466217 109.16 0.15488 112.83 112.75 112.91 3.6715 0.053621 -0.00010746 NaN 0.79363 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1094600 7044 7520 4339 4344 -0.05894626931512903 FCHLYAHFQ 9 Unmodified _FCHLYAHFQ_ 0 0 0 Tigger17a_dup1442|chr10:63296309-63296761:-|1.1589030630201982|0.0119835701864774|6.6|151.0|2|1|sense Tigger17a_dup1442|chr10:63296309-63296761:-|1.1589030630201982|0.0119835701864774|6.6|151.0|2|1|sense Tigger17a_dup1442|chr10:63296309-63296761:-|1.1589030630201982|0.0119835701864774|6.6|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 583.3773803710938 2 583.266019 1164.51748 NaN NaN NaN NaN NaN NaN NaN 45.684 1 48.929 48.429 49.429 3.2441 0 0 0 0.39428 1 9703 9703 2.0598 0 1 7045 33251 4340 4345 8894 8894 -0.058193503688244164 FCHPFLPL 8 Unmodified _FCHPFLPL_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense MSMS UPN48_class_I_Rep_1 5 487.2507019042969 2 487.251849 972.489145 NaN NaN NaN NaN NaN NaN NaN 60.5 1 63.973 63.473 64.473 3.4737 0 0 0 0.4032 1 13388 13388 6.3541 0 1 7046 8144 4341 4346 8895 8895 0.0017995172192968312 FCHPFLPL 8 Unmodified _FCHPFLPL_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense MSMS UPN48_class_I_Rep_1 5 487.2510986328125 2 487.251849 972.489145 NaN NaN NaN NaN NaN NaN NaN 60.653 1 64.126 63.626 64.626 3.4737 0 0 0 0.4032 1 13435 13435 6.3541 0 1 7047 8144 4341 4346 8896 8896 0.0017995172192968312 FCHPFLPL 8 Unmodified _FCHPFLPL_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense MSMS UPN48_class_I_Rep_2 6 487.25128173828125 2 487.251849 972.489145 NaN NaN NaN NaN NaN NaN NaN 60.532 1 64.01 63.51 64.51 3.4785 0 0 0 0.4032 1 13375 13375 6.3541 0 1 7048 8144 4341 4346 8897 8897 0.0017995172192968312 FCHPFLPL 8 Unmodified _FCHPFLPL_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense MSMS UPN48_class_I_Rep_3 7 487.2513122558594 2 487.251849 972.489145 NaN NaN NaN NaN NaN NaN NaN 60.317 1 63.833 63.333 64.333 3.5169 0 0 0 0.4032 1 13240 13240 6.3541 0 1 7049 8144 4341 4346 8898 8898 0.0017995172192968312 FCHPFLPL 8 Unmodified _FCHPFLPL_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|71|3|sense MSMS UPN48_class_I_Rep_3 7 487.2508239746094 2 487.251849 972.489145 NaN NaN NaN NaN NaN NaN NaN 60.451 1 63.968 63.468 64.468 3.5169 0 0 0 0.4032 1 13282 13282 6.3541 0 1 7050 8144 4341 4346 8899 8899 0.0017995172192968312 FCHSPVEGHL 10 Unmodified _FCHSPVEGHL_ 0 0 0 L1MC2_dup153|chr1:86866626-86867204:+|1.0374292401802612|0.2362040958859053|2.13|150.0|36|2|anti-sense L1MC2_dup153|chr1:86866626-86867204:+|1.0374292401802612|0.2362040958859053|2.13|150.0|36|2|anti-sense L1MC2_dup153|chr1:86866626-86867204:+|1.0374292401802612|0.2362040958859053|2.13|150.0|36|2|anti-sense MSMS UPN47_class_I_Rep_3 4 563.2598876953125 2 563.260933 1124.50731 NaN NaN NaN NaN NaN NaN NaN 49.858 1 53.084 52.584 53.584 3.2262 0 0 0 0.53105 1 10964 10964 1.6526 0.85899 1 7051 11224 4342 4347 8900 8900 -0.04995958094013986 FCIFWVLILY 10 Unmodified _FCIFWVLILY_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|83|2|anti-sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|83|2|anti-sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|83|2|anti-sense MSMS UPN48_class_I_Rep_1 5 439.5751037597656 3 439.575239 1315.70389 NaN NaN NaN NaN NaN NaN NaN 37.917 1 41.422 40.922 41.922 3.5052 0 0 0 0.53105 1 6504 6504 7.1017 0 1 7052 10363 4343 4348 8901 8901 0.05866453747034939 FCIHAHAKIAA 11 Unmodified _FCIHAHAKIAA_ 0 0 0 REV__L1PA5_dup2213|chr3:138646873-138648762:-|9.402496579478948|0.1134177848884806|6.37|151.0|50|3|sense REV__L1PA5_dup2213|chr3:138646873-138648762:-|9.402496579478948|0.1134177848884806|6.37|151.0|50|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 590.8153686523438 2 591.316043 1180.61753 0.4596 0.00027177 -0.61925 -0.00036617 -0.15965 -9.4405E-05 591.3156223838703 69.047 0.34731 72.502 72.349 72.697 3.4548 34 25 2 0 0 0 22.551 1 16018 16018 6.2058 3.2105 1 144520 + 7053 29733 4344 4349 8902 8902 0.03444886965007754 FCIHAHAKIAA 11 Unmodified _FCIHAHAKIAA_ 0 0 0 REV__L1PA5_dup2213|chr3:138646873-138648762:-|9.402496579478948|0.1134177848884806|6.37|151.0|50|3|sense REV__L1PA5_dup2213|chr3:138646873-138648762:-|9.402496579478948|0.1134177848884806|6.37|151.0|50|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 591.316043 1180.61753 0.57539 0.00034024 -1.6517 -0.0009767 -1.0763 -0.00063646 591.3143593881117 69.186 0.076988 72.695 72.644 72.721 3.5094 0.096689 -0.0011016 NaN 6.2058 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 108120 + 7054 29733 4344 4349 0.03444886965007754 FCIHFGIRW 9 Unmodified _FCIHFGIRW_ 0 0 0 L1ME2_dup1934|chr2:171928807-171930164:-|2.264233900576529|0.0662928386290178|5.09|151.0|90|2|anti-sense L1ME2_dup1934|chr2:171928807-171930164:-|2.264233900576529|0.0662928386290178|5.09|151.0|90|2|anti-sense L1ME2_dup1934|chr2:171928807-171930164:-|2.264233900576529|0.0662928386290178|5.09|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.7653198242188 2 589.800029 1177.5855 NaN NaN NaN NaN NaN NaN NaN 12.683 1 16.071 15.571 16.571 3.388 0 0 0 0.40038 1 127 127 0.6015 0 1 7055 12492 4345 4350 8903 8903 0.00381519281859255 FCKCVLYF 8 Unmodified _FCKCVLYF_ 0 0 0 L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|42|1|anti-sense L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|42|1|anti-sense L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.7436828613281 2 511.745542 1021.47653 0.058717 3.0048E-05 -1.7309 -0.0008858 -1.6722 -0.00085575 511.7445112319142 67.105 0.20847 70.368 70.2 70.408 3.2636 21 15 2 0 0 0 0.82752 1 16158 16158 5.2307 2.2354 1 35507 7056 15057 4346 4351 8904 8904 -0.03334827732624035 FCKCVLYF 8 Unmodified _FCKCVLYF_ 0 0 0 L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|42|1|anti-sense L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|42|1|anti-sense L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|42|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 511.745542 1021.47653 0.20241 0.00010358 -1.8799 -0.00096204 -1.6775 -0.00085846 512.2463095411431 66.894 0.031425 70.255 70.234 70.266 3.3611 -0.056614 -0.00012534 NaN 5.2307 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 29500 7057 15057 4346 4351 -0.03334827732624035 FCKKKVKKTK 10 Unmodified _FCKKKVKKTK_ 0 0 0 REV__ENSG00000204767|ENST00000377365|INSYN2B REV__ENSG00000204767|ENST00000377365|INSYN2B MSMS UPN47_class_I_Rep_2 3 413.26611328125 3 413.265288 1236.77403 NaN NaN NaN NaN NaN NaN NaN 86.957 1 90.398 89.898 90.898 3.4407 0 0 0 0.53105 1 21621 21621 0.62683 0.39098 1 + 7058 21206 4347 4352 8905 8905 0.16511752135488678 FCLHTARQY 9 Unmodified _FCLHTARQY_ 0 0 0 ENST00000421816.6_1_19:13002118-13008243:+|nuORF;ENST00000591043.1_1_19:13002118-13008243:+|nuORF;ENST00000590530.5_1_19:13002704-13010352:+|nuORF;nc|ENSG00000105607|Q92947-2|GCDH;ENSG00000105607|ENST00000222214|GCDH ENST00000421816.6_1_19:13002118-13008243:+|nuORF ENST00000421816.6_1_19:13002118-13008243:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 569.801513671875 2 569.776751 1137.53895 0.33925 0.0001933 -1.2029 -0.00068541 -0.86369 -0.00049211 569.7760764289252 55.939 0.92715 59.418 59.019 59.946 3.4785 101 52 3 0 0 0 0.45688 1 12858 12858 4.756 0.42677 1 128820 7059 1746 4348 4353 8906 8906 -0.02431965340088027 FCLMCDLF 8 Unmodified _FCLMCDLF_ 0 0 0 L1MC3_dup5864|chr7:152284236-152285464:+|2.031006925294479|0.0430285188600787|5.56|151.0|64|1|anti-sense L1MC3_dup5864|chr7:152284236-152285464:+|2.031006925294479|0.0430285188600787|5.56|151.0|64|1|anti-sense L1MC3_dup5864|chr7:152284236-152285464:+|2.031006925294479|0.0430285188600787|5.56|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_3 7 496.2088317871094 2 496.207935 990.401317 NaN NaN NaN NaN NaN NaN NaN 27.444 1 31.199 30.699 31.699 3.7555 0 0 0 0.40604 1 3603 3603 2.5775 0 1 7060 11360 4349 4354 8907 8907 -0.09426753255365838 FCLPCFPLN 9 Unmodified _FCLPCFPLN_ 0 0 0 REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|264|2|anti-sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|264|2|anti-sense MSMS UPN48_class_I_Rep_3 7 527.24755859375 2 527.248449 1052.48234 NaN NaN NaN NaN NaN NaN NaN 51.818 1 55.428 54.928 55.928 3.6105 0 0 0 0.38299 1 10653 10653 4.756 2.1785 1 + 7061 27619 4350 4355 8908 8908 -0.04179729220959416 FCLWLLQIV 9 Unmodified _FCLWLLQIV_ 0 0 0 L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|28|1|anti-sense L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|28|1|anti-sense L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_3 4 567.8212890625 2 567.822638 1133.63072 NaN NaN NaN NaN NaN NaN NaN 37.691 1 40.932 40.432 41.432 3.2414 0 0 0 0.40038 1 7256 7256 0.6015 0.076735 1 7062 10369 4351 4356 8909 8909 0.06925325024394624 FCNMIQILF 9 Unmodified _FCNMIQILF_ 0 0 0 REV__L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|60|2|anti-sense REV__L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7700805664062 2 564.782656 1127.55076 NaN NaN NaN NaN NaN NaN NaN 50.535 1 53.761 53.261 54.261 3.2262 0 0 0 0.38478 1 11173 11173 4.3292 0.38484 1 + 7063 24213 4352 4357 8910 8910 -0.007914846411040344 FCNTGACQ 8 Unmodified _FCNTGACQ_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MSMS UPN46_class_I_Rep_3 1 422.1591796875 2 422.159831 842.305109 NaN NaN NaN NaN NaN NaN NaN 104.31 1 104.31 103.81 104.81 0 0 0 0 0.40604 1 25475 25475 2.5775 0 1 7064 1147 4353 4358 8911 8911 -0.12235184771111562 FCNVNSIL 8 Unmodified _FCNVNSIL_ 0 0 0 REV__ENST00000563648.1_1_15:72227626-72242653:-|nuORF REV__ENST00000563648.1_1_15:72227626-72242653:-|nuORF MSMS UPN48_class_I_Rep_1 5 455.2367248535156 2 455.228571 908.442588 NaN NaN NaN NaN NaN NaN NaN 96.682 1 100.29 99.794 100.79 3.6124 0 0 0 0.39819 1 23302 23302 8.5933 0 1 + 7065 23042 4354 4359 8912 8912 -0.015295329000196034 FCPCKCLRM 9 Unmodified _FCPCKCLRM_ 0 0 0 Tigger17a_dup1117|chr8:73718012-73718689:-|1.007011034603137|0.0102733064306855|6.62|150.0|44|2|anti-sense Tigger17a_dup1117|chr8:73718012-73718689:-|1.007011034603137|0.0102733064306855|6.62|150.0|44|2|anti-sense Tigger17a_dup1117|chr8:73718012-73718689:-|1.007011034603137|0.0102733064306855|6.62|150.0|44|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7494506835938 2 550.747236 1099.47992 NaN NaN NaN NaN NaN NaN NaN 92.146 1 92.146 91.646 92.646 0 0 0 0 0.39428 1 22287 22287 2.0598 0.40713 1 7066 33250 4355 4360 8913 8913 -0.06584224221933255 FCPFLKMVK 9 Unmodified _FCPFLKMVK_ 0 0 0 REV__L1MB2_dup415|chr1:172605001-172605670:-|1.0872438682786838|0.3264941316403525|1.74|150.0|43|3|anti-sense REV__L1MB2_dup415|chr1:172605001-172605670:-|1.0872438682786838|0.3264941316403525|1.74|150.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 557.1865234375 2 556.803391 1111.59223 NaN NaN NaN NaN NaN NaN NaN 83.435 1 83.435 82.935 83.935 0 0 0 0 0.40038 1 19818 19818 0.6015 0 1 + 7067 25733 4356 4361 8914 8914 0.04089696118239772 FCPRNKLI 8 Unmodified _FCPRNKLI_ 0 0 0 REV__L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|73|3|sense REV__L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|73|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 495.7801818847656 2 495.781305 989.548056 0.20677 0.00010251 -1.5669 -0.00077682 -1.3601 -0.0006743 495.78029047643605 82.169 0.316 85.681 85.636 85.952 3.5122 48 37 2 0 0 0 0.82752 1 20574 20574 4.756 0 1 107080 + 7068 24808 4357 4362 8915 8915 0.0528642801625665 FCPRNKLI 8 Unmodified _FCPRNKLI_ 0 0 0 REV__L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|73|3|sense REV__L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|73|3|sense MSMS UPN47_class_I_Rep_1 2 495.7812194824219 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 83.958 1 87.524 87.024 88.024 3.5655 0 0 0 0.4044 1 21005 21005 4.756 0 1 + 7069 24808 4357 4362 8916 8916 0.0528642801625665 FCRCSCGPLL 10 Unmodified _FCRCSCGPLL_ 0 0 0 REV__ENST00000312858.9_3_14:76644237-76662256:+|nuORF REV__ENST00000312858.9_3_14:76644237-76662256:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.7495727539062 2 549.74829 1097.48203 0.54126 0.00029756 1.2469 0.00068546 1.7881 0.00098301 549.7496725881889 62.452 1.0734 65.926 65.233 66.306 3.4738 153 81 3 0 0 0 0.43106 1 13847 13847 17.113 4.5813 1 236090 + 7070 21711 4358 4363 8917 8917 -0.06281472212458539 FCSFFRLR 8 Unmodified _FCSFFRLR_ 0 0 0 REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|33|3|anti-sense REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 538.3270874023438 2 538.278929 1074.54331 NaN NaN NaN NaN NaN NaN NaN 99.333 1 99.333 98.833 99.833 0 0 0 0 0.40604 1 24196 24196 2.5775 0.51773 1 + 7071 28031 4359 4364 8918 8918 0.009015438734877534 FCSWNRRL 8 Unmodified _FCSWNRRL_ 0 0 0 REV__HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|104|3|anti-sense REV__HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|104|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 541.7738037109375 2 541.271635 1080.52872 0.47579 0.00025753 0.50652 0.00027416 0.98231 0.0005317 541.7734748816038 53.758 0.61884 57.085 56.879 57.498 3.3266 77 38 3 0 0 0 0.82752 1 12158 12158 2.3027 0 1 85691 + 7072 23972 4360 4365 8919 8919 -0.008325282746454832 FCTFRTEKK 9 Unmodified _FCTFRTEKK_ 0 0 0 REV__L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|84|2|anti-sense REV__L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 580.8012084960938 2 580.300059 1158.58556 0.4932 0.0002862 -0.44016 -0.00025543 0.053033 3.0775E-05 580.2997558627941 109.86 0.066254 113.46 113.44 113.5 3.6046 14 8 2 0 0 0 0.48643 1 27110 27110 2.0598 0.21551 1 172140 + 7073 28158 4361 4366 8920 8920 0.012614744912070819 FCTMFYYMH 9 Unmodified _FCTMFYYMH_ 0 0 0 REV__L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|81|3|anti-sense REV__L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|81|3|anti-sense MSMS UPN48_class_I_Rep_3 7 621.7428588867188 2 621.742673 1241.47079 NaN NaN NaN NaN NaN NaN NaN 117.39 1 121 120.5 121.5 3.6124 0 0 0 0.40038 1 27927 27927 0.6015 0 1 + 7074 28051 4362 4367 8921 8921 -0.1402829430660404 FCVFFMFHP 9 Unmodified _FCVFFMFHP_ 0 0 0 REV__L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|57|1|anti-sense REV__L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 587.765380859375 2 587.764266 1173.51398 0.048445 2.8474E-05 1.5618 0.00091794 1.6102 0.00094642 587.7649612485218 12.908 0.15707 16.296 16.22 16.377 3.388 18 16 2 0 0 0 0.50015 1 189 189 0.6015 0 1 32373 + 7075 30488 4363 4368 8922 8922 -0.06583736466996015 FCVFFMFHP 9 Unmodified _FCVFFMFHP_ 0 0 0 REV__L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|57|1|anti-sense REV__L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|57|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 587.764266 1173.51398 -0.12542 -7.372E-05 1.5787 0.00092792 1.4533 0.0008542 587.7649075646073 12.839 0.092112 16.289 16.225 16.317 3.45 -0.0036481 8.7628E-06 NaN 0.6015 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 26132 + 7076 30488 4363 4368 -0.06583736466996015 FCVLIYLRIV 10 Unmodified _FCVLIYLRIV_ 0 0 0 REV__L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|147|3|anti-sense REV__L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|147|3|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8698120117188 2 619.87012 1237.72569 NaN NaN NaN NaN NaN NaN NaN 85.578 1 89.283 88.783 89.783 3.7058 0 0 0 0.53105 1 20353 20353 0.45834 0 1 + 7077 30274 4364 4369 8923 8923 0.11633258495567134 FCVLTESTQIR 11 Unmodified _FCVLTESTQIR_ 0 0 0 L1MD1_dup1099|chr3:23899096-23899396:+|1.0540961484578473|0.1418898510538612|2.89|151.0|13|3|sense L1MD1_dup1099|chr3:23899096-23899396:+|1.0540961484578473|0.1418898510538612|2.89|151.0|13|3|sense L1MD1_dup1099|chr3:23899096-23899396:+|1.0540961484578473|0.1418898510538612|2.89|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 432.8851623535156 3 432.892067 1295.65437 NaN NaN NaN NaN NaN NaN NaN 89.623 1 93.021 92.521 93.521 3.3976 0 0 0 0.38417 1 22470 22470 0.094841 0 1 7078 11906 4365 4370 8924 8924 0.018370940002569114 FCVRAHTKIT 10 Unmodified _FCVRAHTKIT_ 0 0 0 REV__L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|124|2|sense REV__L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|124|2|sense MSMS UPN48_class_I_Rep_2 6 588.2967529296875 2 588.321325 1174.6281 NaN NaN NaN NaN NaN NaN NaN 42.506 1 46.264 45.764 46.764 3.7579 0 0 0 0.53105 1 7877 7877 3.2813 0.97858 1 + 7079 30062 4366 4371 8925 8925 0.04776869619422541 FCVRNPMQ 8 Unmodified _FCVRNPMQ_ 0 0 0 REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|33|1|sense REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|33|1|sense MSMS UPN46_class_I_Rep_3 1 497.735595703125 2 497.733497 993.452441 NaN NaN NaN NaN NaN NaN NaN 118.51 1 118.51 118.01 119.01 0 0 0 0 0.40404 1 29419 29419 5.2307 0.47466 1 + 7080 23555 4367 4372 8926 8926 -0.044546681662950505 FCVRRLKIRLI 11 Unmodified _FCVRRLKIRLI_ 0 0 0 L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|236|2|anti-sense L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|236|2|anti-sense L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|236|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 473.27911376953125 3 472.970986 1415.89113 0.16408 7.7605E-05 0.30613 0.00014479 0.47021 0.0002224 472.9710962953063 58.041 0.30646 58.041 57.861 58.168 0 57 31 2 0 0 0 22.551 1 12766 12766 0.08335 0.08335 1 257960 7081 15115 4368 4373 8927 8927 0.1998191007510286 FCWFCHSCF 9 Unmodified _FCWFCHSCF_ 0 0 0 REV__L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|242|2|anti-sense REV__L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|242|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 590.2144165039062 2 590.214083 1178.41361 0.44011 0.00025976 -0.21129 -0.00012471 0.22882 0.00013505 590.2138130904601 78.057 0.47694 81.579 81.321 81.798 3.5221 75 53 2 0 0 0 0.46434 1 18609 18609 4.3292 0 1 126240 + 7082 29503 4369 4374 8928 8928 -0.16845716792340681 FCWFCHSCF 9 Unmodified _FCWFCHSCF_ 0 0 0 REV__L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|242|2|anti-sense REV__L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|242|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 590.716552734375 2 590.214083 1178.41361 0.47766 0.00028192 -0.0039706 -2.3435E-06 0.47369 0.00027958 590.2138844572046 77.949 0.59787 81.571 81.318 81.916 3.6222 97 61 2 0 0 0 0.48643 1 18543 18543 2.0598 0 1 111510 + 7083 29503 4369 4374 8929 8929 -0.16845716792340681 FCWLSLYLY 9 Unmodified _FCWLSLYLY_ 0 0 0 L1MC5a_dup8122|chr8:53822090-53823501:+|1.3567133943632763|0.0143915198049523|6.56|151.0|63|1|anti-sense L1MC5a_dup8122|chr8:53822090-53823501:+|1.3567133943632763|0.0143915198049523|6.56|151.0|63|1|anti-sense L1MC5a_dup8122|chr8:53822090-53823501:+|1.3567133943632763|0.0143915198049523|6.56|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_2 6 604.2977905273438 2 604.296453 1206.57835 NaN NaN NaN NaN NaN NaN NaN 46.219 1 49.971 49.471 50.471 3.7518 0 0 0 0.36505 1 9007 9007 7.2892 0.56607 1 7084 11764 4370 4375 8930 8930 -0.01667258109227987 FCYEDTCTCM 10 Unmodified _FCYEDTCTCM_ 0 0 0 L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 405.7978820800781 3 405.799023 1214.37524 NaN NaN NaN NaN NaN NaN NaN 21.233 1 24.64 24.14 25.14 3.4074 0 0 0 0.53105 1 2340 2340 0.13989 0.13989 1 7085 13741 4371 4376 8931 8931 -0.223374352798146 FCYFCKYL 8 Unmodified _FCYFCKYL_ 0 0 0 REV__ENST00000339431.8_1_7:102585067-102585361:+|nuORF REV__ENST00000339431.8_1_7:102585067-102585361:+|nuORF MSMS UPN47_class_I_Rep_3 4 543.7433471679688 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 111.4 1 114.93 114.43 115.43 3.5207 0 0 0 0.40738 1 27346 27346 0.79363 0 1 + 7086 21810 4372 4377 8932 8932 -0.06787131595251594 FCYHCANLYD 10 Unmodified _FCYHCANLYD_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS UPN46_class_I_Rep_3 1 416.84246826171875 3 416.831931 1247.47396 NaN NaN NaN NaN NaN NaN NaN 19.594 1 19.594 19.094 20.094 0 0 0 0 0.53105 1 1893 1893 0.15932 0 1 7087 4737 4373 4378 8933 8933 -0.13987327928248305 FCYIPFKKK 9 Unmodified _FCYIPFKKK_ 0 0 0 L1M5_dup6091|chr2:96541304-96541663:+|1.1262614832525857|0.3863465580499676|1.54|151.0|24|3|anti-sense L1M5_dup6091|chr2:96541304-96541663:+|1.1262614832525857|0.3863465580499676|1.54|151.0|24|3|anti-sense L1M5_dup6091|chr2:96541304-96541663:+|1.1262614832525857|0.3863465580499676|1.54|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_1 2 587.2698364257812 2 587.328088 1172.64162 NaN NaN NaN NaN NaN NaN NaN 63.959 1 67.315 66.815 67.815 3.3557 0 0 0 0.40038 1 15168 15168 0.6015 0 1 7088 9206 4374 4379 8934 8934 0.0622072739865871 FDAESPRYY 9 Unmodified _FDAESPRYY_ 0 0 0 REV__L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|290|2|anti-sense REV__L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|290|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7559814453125 2 574.256371 1146.49819 -0.051513 -2.9582E-05 0.5648 0.00032434 0.51329 0.00029476 574.756901251965 38.133 0.55955 41.798 41.495 42.054 3.6652 61 45 2 0 0 0 0.36392 2 7271 7271;7308 10.074 0.78282 1 116430 + 7089 29980 4375 4380 8935;8936 8935 -0.06920028178706161 FDAESPRYY 9 Unmodified _FDAESPRYY_ 0 0 0 REV__L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|290|2|anti-sense REV__L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|290|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.2575073242188 2 574.256371 1146.49819 0.045346 2.604E-05 -0.38264 -0.00021974 -0.3373 -0.0001937 574.7560554871341 38.32 0.62843 41.708 41.203 41.832 3.3879 69 51 2 0 0 0 0.43153 2 7400 7400;7408 6.2058 0.97511 1 83438 + 7090 29980 4375 4380 8937;8938 8937 -0.06920028178706161 FDAESPRYY 9 Unmodified _FDAESPRYY_ 0 0 0 REV__L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|290|2|anti-sense REV__L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|290|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.2574462890625 2 574.256371 1146.49819 -0.056768 -3.26E-05 0.37024 0.00021261 0.31347 0.00018001 574.7568675762428 38.421 0.46209 41.662 41.497 41.959 3.2414 52 32 2 0 0 0 0.43153 2 7536 7536;7557 6.2058 0.97511 1 70680 + 7091 29980 4375 4380 8939;8940 8939 -0.06920028178706161 FDATDRLFL 9 Unmodified _FDATDRLFL_ 0 0 0 REV__ENST00000530727.5_1_1:198608260-198608399:+|nuORF REV__ENST00000530727.5_1_1:198608260-198608399:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 549.7876586914062 2 549.284931 1096.55531 0.17204 9.4501E-05 -0.18445 -0.00010132 -0.012407 -6.8149E-06 549.2848899638713 46.365 0.66896 50.065 49.775 50.444 3.6999 111 44 3 0 0 0 0.39745 1 9904 9904 8.1555 8.1555 1 237840 + 7092 22846 4376 4381 8941 8941 0.010894390976545765 FDATDRLFL 9 Unmodified _FDATDRLFL_ 0 0 0 REV__ENST00000530727.5_1_1:198608260-198608399:+|nuORF REV__ENST00000530727.5_1_1:198608260-198608399:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.7865600585938 2 549.284931 1096.55531 0.31056 0.00017058 -0.31342 -0.00017215 -0.0028592 -1.5705E-06 549.2848645177991 46.784 0.9126 50.027 49.73 50.642 3.2439 129 56 3 0 0 0 0.37599 1 10139 10139 9.3831 9.3831 1 252050 + 7093 22846 4376 4381 8942 8942 0.010894390976545765 FDCMEHHCKC 10 Unmodified _FDCMEHHCKC_ 0 0 0 REV__ENSG00000183054.11,RGPD6,chr2,-,I5.1,110563334,110566951|24|3.9|1|intron REV__ENSG00000183054.11,RGPD6,chr2,-,I5.1,110563334,110566951|24|3.9|1|intron MSMS UPN47_class_I_Rep_3 4 626.7221069335938 2 626.721946 1251.42934 NaN NaN NaN NaN NaN NaN NaN 22.745 1 26.095 25.595 26.595 3.3503 0 0 0 0.53105 1 2772 2772 1.4819 0 1 + 7094 20320 4377 4382 8943 8943 -0.1863179833758295 FDCTCESI 8 Unmodified _FDCTCESI_ 0 0 0 nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3 nc|ENSG00000164342|O15455-2|TLR3 nc|ENSG00000164342|O15455-2|TLR3 MSMS UPN48_class_I_Rep_1 5 459.17218017578125 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 60.193 1 63.667 63.167 64.167 3.4737 0 0 0 0.40604 1 13293 13293 2.5775 0 1 7095 4108 4378 4383 8944 8944 -0.13085755039321612 FDDDDDWED 9 Unmodified _FDDDDDWED_ 0 0 0 ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MSMS UPN48_class_I_Rep_2 6 586.189697265625 2 586.188548 1170.36254 NaN NaN NaN NaN NaN NaN NaN 115.86 1 119.52 119.02 120.02 3.6607 0 0 0 0.4029 1 27740 27740 0 0 1 7096 5361 4379 4384 8945 8945 -0.21582392550863005 FDDDEDEDIW 10 Unmodified _FDDDEDEDIW_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MSMS UPN48_class_I_Rep_3 7 649.7388305664062 2 649.738405 1297.46226 NaN NaN NaN NaN NaN NaN NaN 107.41 1 111.09 110.59 111.59 3.6813 0 0 0 0.53105 1 25328 25328 1.4819 0.28856 1 7097 1485 4380 4385 8946 8946 -0.17457574936906894 FDDECEYG 8 Unmodified _FDDECEYG_ 0 0 0 ENSG00000172404|ENST00000307221|DNAJB7 ENSG00000172404|ENST00000307221|DNAJB7 ENSG00000172404|ENST00000307221|DNAJB7 MSMS UPN47_class_I_Rep_3 4 489.16302490234375 2 489.16329 976.312028 NaN NaN NaN NaN NaN NaN NaN 107.61 1 111.15 110.65 111.65 3.5382 0 0 0 0.40746 1 26275 26275 0.69038 0 1 7098 4573 4381 4386 8947 8947 -0.17707593409545552 FDDRGWVH 8 Unmodified _FDDRGWVH_ 0 0 0 REV__ENST00000374980.2_1_20:32693340-32699965:-|nuORF REV__ENST00000374980.2_1_20:32693340-32699965:-|nuORF MSMS UPN47_class_I_Rep_1 2 516.23876953125 2 516.238316 1030.46208 NaN NaN NaN NaN NaN NaN NaN 118.45 1 122.06 121.56 122.56 3.6036 0 0 0 0.40738 1 29395 29395 0.79363 0 1 + 7099 22006 4382 4387 8948 8948 -0.05193440564926277 FDDSGDECCS 10 Unmodified _FDDSGDECCS_ 0 0 0 REV__L1MCa_dup3079|chr7:45061785-45062209:-|1.165410459078721|0.0702080274639411|4.05|151.0|20|1|anti-sense REV__L1MCa_dup3079|chr7:45061785-45062209:-|1.165410459078721|0.0702080274639411|4.05|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_1 5 539.1629028320312 2 539.160422 1076.30629 NaN NaN NaN NaN NaN NaN NaN 55.268 1 58.776 58.276 59.276 3.5082 0 0 0 0.53105 1 11780 11780 0.45834 0 1 + 7100 27199 4383 4388 8949 8949 -0.2288105998352421 FDETLGLLL 9 Unmodified _FDETLGLLL_ 0 0 0 REV__L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|261|3|anti-sense REV__L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|261|3|anti-sense MSMS UPN48_class_I_Rep_2 6 510.7821350097656 2 510.784233 1019.55391 NaN NaN NaN NaN NaN NaN NaN 69.847 1 73.368 72.868 73.868 3.5216 0 0 0 0.39428 1 16208 16208 2.0598 0 1 + 7101 26563 4384 4389 8950 8950 0.04491805008922256 FDETTDMY 8 Unmodified _FDETTDMY_ 0 0 0 REV__ENST00000466893.5_1_3:62262350-62302793:-|nuORF REV__ENST00000466893.5_1_3:62262350-62302793:-|nuORF MSMS UPN46_class_I_Rep_3 1 511.2144470214844 2 511.19459 1020.37463 NaN NaN NaN NaN NaN NaN NaN 64.837 1 64.837 64.337 65.337 0 0 0 0 0.40604 1 14622 14622 2.5775 0.51773 1 + 7102 22477 4385 4390 8951 8951 -0.1347444734135479 FDFLFIEPF 9 Unmodified _FDFLFIEPF_ 0 0 0 REV__HAL1_dup2854|chr2:101852877-101854104:+|1.1527336603022718|0.3306153339993896|1.8|151.0|11|1|sense REV__HAL1_dup2854|chr2:101852877-101854104:+|1.1527336603022718|0.3306153339993896|1.8|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.8063354492188 2 587.794601 1173.57465 0.42161 0.00024782 -1.1491 -0.00067546 -0.72753 -0.00042764 587.7939357815045 43.018 0.35315 46.529 46.324 46.677 3.5103 34 27 2 0 0 0 0.26948 1 8071 8071 15.847 0.5987 1 89358 + 7103 23416 4386 4391 8952 8952 -0.005196046114406272 FDFTGIDDLEN 11 Unmodified _FDFTGIDDLEN_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS UPN46_class_I_Rep_3 1 643.2828979492188 2 643.282783 1284.55101 0.70627 0.00045433 -0.12091 -7.7776E-05 0.58537 0.00037656 643.2826758399565 70.138 0.94765 70.138 69.798 70.745 0 302 102 4 0 0 0 0.27122 4 16174 16058;16097;16135;16174 28.495 28.495 1 2805900 7104 2751 4387 4392 8953;8954;8955;8956 8956 -0.07988114906538613 FDFTGIDDLEN 11 Unmodified _FDFTGIDDLEN_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 643.282783 1284.55101 0.70627 0.00045433 -0.12091 -7.7776E-05 0.58537 0.00037656 643.2826758399565 70.138 0.94765 70.138 69.798 70.745 0 0 0 NaN 28.495 302 102 4 NaN NaN NaN NaN 0 NaN NaN 0 2805900 7105 2751 4387 4392 -0.07988114906538613 FDFYFRLR 8 Unmodified _FDFYFRLR_ 0 0 0 L1PA16_dup1550|chr2:143627826-143628409:-|1.1557033653713158|0.006425791112762|7.49|151.0|20|1|anti-sense L1PA16_dup1550|chr2:143627826-143628409:-|1.1557033653713158|0.006425791112762|7.49|151.0|20|1|anti-sense L1PA16_dup1550|chr2:143627826-143628409:-|1.1557033653713158|0.006425791112762|7.49|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_2 6 582.3040161132812 2 582.303458 1162.59236 NaN NaN NaN NaN NaN NaN NaN 93.74 1 97.51 97.01 98.01 3.77 0 0 0 0.40746 1 22289 22289 0.69038 0 1 7106 14057 4388 4393 8957 8957 0.017571554340747753 FDFYFWFF 8 Unmodified _FDFYFWFF_ 0 0 0 REV__L1ME2_dup762|chr1:175953607-175954700:+|1.6648720564097634|0.1284026367396347|3.7|151.0|70|3|anti-sense REV__L1ME2_dup762|chr1:175953607-175954700:+|1.6648720564097634|0.1284026367396347|3.7|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_1 2 406.8478698730469 3 406.848016 1217.52222 NaN NaN NaN NaN NaN NaN NaN 112.03 1 115.6 115.1 116.1 3.572 0 0 0 0.40768 1 27643 27643 0.40072 0 1 + 7107 27885 4389 4394 8958 8958 -0.07784142954392337 FDGTPSFRTV 10 Unmodified _FDGTPSFRTV_ 0 0 0 ENST00000595164.5_1_19:39332266-39332347:-|nuORF ENST00000595164.5_1_19:39332266-39332347:-|nuORF ENST00000595164.5_1_19:39332266-39332347:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 563.7786254882812 2 563.780013 1125.54547 0.33441 0.00018853 -0.44986 -0.00025362 -0.11545 -6.5091E-05 563.7795166216101 54.54 0.98517 58.041 57.673 58.658 3.5014 89 57 2 0 0 0 0.53414 1 12424 12424 7.609 0.31972 1 159980 7108 7645 4390 4395 8959 8959 -0.012277489077177961 FDIISRFIFYL 11 Unmodified _FDIISRFIFYL_ 0 0 0 REV__L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|110|3|anti-sense REV__L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|110|3|anti-sense MSMS UPN48_class_I_Rep_3 7 478.599365234375 3 478.599101 1432.77547 NaN NaN NaN NaN NaN NaN NaN 39.62 1 43.276 42.776 43.776 3.6557 0 0 0 0.38417 1 6951 6951 1.3296 0.55311 1 + 7109 26580 4391 4396 8960 8960 0.07639664705220639 FDILIQLMFLF 11 Unmodified _FDILIQLMFLF_ 0 0 0 REV__L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|49|1|anti-sense REV__L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|49|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 467.2611999511719 3 467.26132 1398.76213 0.1308 6.1117E-05 -0.39388 -0.00018404 -0.26308 -0.00012293 467.26102913564506 55.443 0.90756 58.951 58.558 59.466 3.5082 110 58 3 0 0 0 0.64031 1 11861 11861 4.1166 0.27072 1 295240 + 7110 27826 4392 4397 8961 8961 0.07870090601636548 FDKGRKKS 8 Unmodified _FDKGRKKS_ 0 0 0 REV__L1PA4_dup10609|chr15:51590947-51597084:+|1.8734132440726263|0.0668992513471707|4.81|151.0|110|2|sense REV__L1PA4_dup10609|chr15:51590947-51597084:+|1.8734132440726263|0.0668992513471707|4.81|151.0|110|2|sense MSMS UPN48_class_I_Rep_1 5 482.9742126464844 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 51.189 1 54.714 54.214 55.214 3.5246 0 0 0 0.40527 1 10532 10532 3.5965 1.2938 1 + 7111 29588 4393 4398 8962 8962 0.06172295882936396 FDLDLRYG 8 Unmodified _FDLDLRYG_ 0 0 0 REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF MSMS UPN47_class_I_Rep_1 2 499.738037109375 2 499.750724 997.486896 NaN NaN NaN NaN NaN NaN NaN 26.302 1 30.064 29.564 30.564 3.7624 0 0 0 0.40404 1 3745 3745 5.2307 0 1 + 7112 21073 4394 4399 8963 8963 -0.011948054821800724 FDLEIGYDTLT 11 Unmodified _FDLEIGYDTLT_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MSMS UPN48_class_I_Rep_1 5 643.8132934570312 2 643.811176 1285.6078 NaN NaN NaN NaN NaN NaN NaN 107.1 1 110.73 110.23 111.23 3.6299 0 0 0 0.38417 1 25800 25800 2.7352 0.89096 1 7113 4130 4395 4400 8964 8964 -0.0235806735006463 FDLIQSKLF 9 Unmodified _FDLIQSKLF_ 0 0 0 REV__L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|16|2|sense REV__L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.8140258789062 2 555.813325 1109.6121 0.49186 0.00027338 0.37232 0.00020694 0.86418 0.00048032 555.8134875336251 79.727 0.15327 83.361 83.262 83.415 3.6331 27 17 2 0 0 0 0.35081 1 18946 18946 10.824 0 1 71949 + 7114 24047 4396 4401 8965 8965 0.061674866541807205 FDLKDIKREHV 11 Unmodified _FDLKDIKREHV_ 0 0 0 REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 467.26129150390625 3 467.261259 1398.76195 0.32268 0.00015078 -0.48765 -0.00022786 -0.16498 -7.7086E-05 467.26095618674395 55.382 0.87008 58.938 58.582 59.452 3.5559 111 52 3 0 0 0 0.56006 1 11801 11801 6.2344 0 1 304160 + 7115 27220 4397 4402 8966 8966 0.07851806925964411 FDLKDIKREHV 11 Unmodified _FDLKDIKREHV_ 0 0 0 REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 467.26123046875 3 467.261259 1398.76195 0.07755 3.6236E-05 -0.30634 -0.00014314 -0.22879 -0.0001069 467.26103058997046 55.427 0.85825 58.982 58.543 59.401 3.5554 103 52 3 0 0 0 0.56006 1 11757 11757 6.2344 0 1 298480 + 7116 27220 4397 4402 8967 8967 0.07851806925964411 FDLKDIKREHV 11 Unmodified _FDLKDIKREHV_ 0 0 0 REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 467.261259 1398.76195 0.10401 4.8601E-05 -0.63099 -0.00029484 -0.52698 -0.00024624 467.26073363932034 55.574 0.22094 58.884 58.756 58.976 3.3102 -0.026464 -0.0003879 NaN 6.2344 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 100660 + 7117 27220 4397 4402 0.07851806925964411 FDLKDIKREHV 11 Unmodified _FDLKDIKREHV_ 0 0 0 REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 467.261259 1398.76195 -0.080443 -3.7588E-05 -0.30008 -0.00014022 -0.38053 -0.00017781 467.2609965671971 55.619 0.64191 58.797 58.43 59.072 3.1779 -0.11326 7.5957E-05 NaN 6.2344 61 39 2 NaN NaN NaN NaN 0 NaN NaN 0 86486 + 7118 27220 4397 4402 0.07851806925964411 FDLKDIKREHV 11 Unmodified _FDLKDIKREHV_ 0 0 0 REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense REV__L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|14|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 467.261259 1398.76195 0.32268 0.00015078 -0.48765 -0.00022786 -0.16498 -7.7086E-05 467.26095618674395 55.382 0.87008 58.938 58.582 59.452 3.5559 0.027469 -0.00018697 NaN 6.2344 111 52 3 NaN NaN NaN NaN 0 NaN NaN 0 304160 + 7119 27220 4397 4402 0.07851806925964411 FDLPDSSGSA 10 Unmodified _FDLPDSSGSA_ 0 0 0 REV__ENSG00000088882|ENST00000380605|CPXM1 REV__ENSG00000088882|ENST00000380605|CPXM1 MSMS UPN48_class_I_Rep_1 5 498.2201843261719 2 498.219454 994.424355 NaN NaN NaN NaN NaN NaN NaN 30.003 1 33.545 33.045 34.045 3.542 0 0 0 0.53105 1 4249 4249 3.2813 0 1 + 7120 17996 4398 4403 8968 8968 -0.0730799634103505 FDLYVRSKLL 10 Unmodified _FDLYVRSKLL_ 0 0 0 REV__L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|17|3|anti-sense REV__L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|17|3|anti-sense MSMS UPN48_class_I_Rep_3 7 627.3674926757812 2 627.366256 1252.71796 NaN NaN NaN NaN NaN NaN NaN 62.603 1 66.113 65.613 66.613 3.5104 0 0 0 0.53105 1 13928 13928 3.2813 0 1 + 7121 27470 4399 4404 8969 8969 0.1017082249966279 FDQPKIEDP 9 Unmodified _FDQPKIEDP_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-SECPEP UPN47_class_I_Rep_3 4 544.80078125 2 544.766571 1087.51859 -0.050769 -2.7657E-05 -0.078319 -4.2665E-05 -0.12909 -7.0323E-05 544.7664859833325 39.758 0.94696 42.996 42.677 43.624 3.2372 125 64 3 0 0 0 0.12477 1 7798 7798 1.6526 0 1 223920 7122 4281 4400 4405 8970 8970 -0.021668575189096373 FDQPKIEDP 9 Unmodified _FDQPKIEDP_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MATCH UPN47_class_I_Rep_2 3 2 544.766571 1087.51859 0.014152 7.7098E-06 0.077783 4.2373E-05 0.091935 5.0083E-05 544.7665341403979 39.638 0.7549 43.017 42.713 43.468 3.3785 0.020711 0.00015545 NaN 1.6526 106 49 3 NaN NaN NaN NaN 0 NaN NaN 0 193160 7123 4281 4400 4405 -0.021668575189096373 FDRLSHYY 8 Unmodified _FDRLSHYY_ 0 0 0 L1PB1_dup1117|chr2:63478072-63481899:+|1.4386676357596886|0.0506902241324578|4.83|151.0|241|3|anti-sense L1PB1_dup1117|chr2:63478072-63481899:+|1.4386676357596886|0.0506902241324578|4.83|151.0|241|3|anti-sense L1PB1_dup1117|chr2:63478072-63481899:+|1.4386676357596886|0.0506902241324578|4.83|151.0|241|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 550.749267578125 2 550.761623 1099.50869 0.37351 0.00020571 -1.0317 -0.0005682 -0.65816 -0.00036249 550.7609911868825 66.849 0.38785 70.21 70.052 70.44 3.3611 43 31 2 0 0 0 0.72333 1 16084 16084 7.9102 2.6795 1 67237 7124 15010 4401 4406 8971 8971 -0.03708000733627159 FDRRAKAI 8 Unmodified _FDRRAKAI_ 0 0 0 L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|24|1|sense L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|24|1|sense L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|24|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 488.2947998046875 2 488.787976 975.561398 -0.36408 -0.00017796 -0.88112 -0.00043068 -1.2452 -0.00060864 488.7875243881803 13.242 0.23389 16.699 16.609 16.843 3.457 45 26 2 0 0 0 0.72333 1 308 308 2.3027 0.24298 1 65231 7125 11100 4402 4407 8972 8972 0.07264002119836732 FDRYRQEW 8 Unmodified _FDRYRQEW_ 0 0 0 ENST00000394318.7_1_17:37224095-37235479:-|nuORF;PLXDC1|p.K416Rfs*55|1|0.05|ENSG00000161381|chr17:39069994-39069994|G/-|frameshift_variant;ENSG00000161381|ENST00000315392|PLXDC1 ENST00000394318.7_1_17:37224095-37235479:-|nuORF ENST00000394318.7_1_17:37224095-37235479:-|nuORF MSMS UPN48_class_I_Rep_3 7 600.2838134765625 2 600.283254 1198.55196 NaN NaN NaN NaN NaN NaN NaN 28.044 1 31.786 31.286 32.286 3.7424 0 0 0 0.40753 1 3763 3763 0.6015 0 1 7126 3901 4403 4408 8973 8973 -0.03937810956335852 FDSDVGVYR 9 Unmodified _FDSDVGVYR_ 0 0 0 ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENSG00000179344|ENST00000434651|HLA-DQB1 ENSG00000179344|ENST00000434651|HLA-DQB1 MULTI-MSMS UPN48_class_I_Rep_1 5 529.2512817382812 2 529.251089 1056.48762 0.34142 0.0001807 -0.083096 -4.3978E-05 0.25833 0.00013672 529.2509025518272 39.627 0.74824 43.132 42.805 43.553 3.5048 136 73 3 0 0 0 0.0078401 1 6979 6979 96.367 54.527 1 332220 7127 4858 4404 4409 8974 8974 -0.03836010833151704 FDSDVGVYR 9 Unmodified _FDSDVGVYR_ 0 0 0 ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENSG00000179344|ENST00000434651|HLA-DQB1 ENSG00000179344|ENST00000434651|HLA-DQB1 MULTI-MSMS UPN48_class_I_Rep_2 6 529.251220703125 2 529.251089 1056.48762 0.36939 0.0001955 0.13304 7.0413E-05 0.50243 0.00026591 529.2508766634458 39.224 0.71669 42.954 42.674 43.391 3.7297 135 69 3 0 0 0 0.015319 1 7003 7003 66.457 35.82 1 320300 7128 4858 4404 4409 8975 8975 -0.03836010833151704 FDSDVGVYR 9 Unmodified _FDSDVGVYR_ 0 0 0 ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENSG00000179344|ENST00000434651|HLA-DQB1 ENSG00000179344|ENST00000434651|HLA-DQB1 MULTI-MSMS UPN48_class_I_Rep_3 7 529.2511596679688 2 529.251089 1056.48762 0.39424 0.00020865 0.34447 0.00018231 0.73871 0.00039096 529.2509032054743 39.322 0.77705 42.978 42.699 43.476 3.6557 138 71 3 0 0 0 0.0078401 1 6893 6893 96.367 50.667 1 285610 7129 4858 4404 4409 8976 8976 -0.03836010833151704 FDSDVGVYR 9 Unmodified _FDSDVGVYR_ 0 0 0 ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENSG00000179344|ENST00000434651|HLA-DQB1 ENSG00000179344|ENST00000434651|HLA-DQB1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 529.251089 1056.48762 0.36527 0.00019332 -0.61136 -0.00032356 -0.24609 -0.00013024 529.2508233922434 39.769 0.049896 43.511 43.489 43.539 3.7413 0.18934 -0.0005421 NaN 96.367 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 53989 7130 4858 4404 4409 -0.03836010833151704 FDSFREGLF 9 Unmodified _FDSFREGLF_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|167|2|anti-sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|167|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.2685546875 2 559.269281 1116.52401 0.58916 0.0003295 -0.25299 -0.00014149 0.33617 0.00018801 559.2690343177755 63.508 0.92588 66.966 66.544 67.47 3.4578 202 72 3 0 0 0 0.24936 1 14428 14428 17.113 3.2068 1 1203400 + 7131 25283 4405 4410 8977 8977 -0.029591339364287705 FDSFREGLF 9 Unmodified _FDSFREGLF_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|167|2|anti-sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|167|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.2689208984375 2 559.269281 1116.52401 0.53901 0.00030145 -0.1916 -0.00010716 0.34741 0.00019429 559.269096855793 63.365 0.92188 66.838 66.428 67.349 3.4738 239 76 4 0 0 0 0.17897 2 14355 14355;14376 22.736 2.3217 1 1542100 + 7132 25283 4405 4410 8978;8979 8978 -0.029591339364287705 FDSFREGLF 9 Unmodified _FDSFREGLF_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|167|2|anti-sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|167|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.2889404296875 2 559.269281 1116.52401 0.43735 0.00024459 0.41216 0.00023051 0.8495 0.0004751 559.2696127565304 63.851 0.15723 67.359 67.262 67.419 3.5083 10 8 2 0 0 0 0.20317 1 14302 14302 20.415 4.5674 1 55159 + 7133 25283 4405 4410 8980 8980 -0.029591339364287705 FDSKDPPIY 9 Unmodified _FDSKDPPIY_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MULTI-MSMS UPN47_class_I_Rep_3 4 541.2622680664062 2 541.263665 1080.51278 0.36547 0.00019781 -0.79246 -0.00042893 -0.427 -0.00023112 541.2619155269895 56.793 1.1875 59.965 59.308 60.495 3.1721 209 91 3 0 0 0 0.44858 1 13080 13080 5.2307 0 1 774350 7134 5021 4406 4411 8981 8981 -0.02425956030560883 FDSKIDHW 8 Unmodified _FDSKIDHW_ 0 0 0 L1MC5a_dup9007|chr9:92498473-92499681:+|2.339659031807947|0.0994218458144309|4.56|151.0|48|1|anti-sense L1MC5a_dup9007|chr9:92498473-92499681:+|2.339659031807947|0.0994218458144309|4.56|151.0|48|1|anti-sense L1MC5a_dup9007|chr9:92498473-92499681:+|2.339659031807947|0.0994218458144309|4.56|151.0|48|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.2487182617188 2 524.248349 1046.48214 0.4312 0.00022606 -0.1662 -8.7128E-05 0.265 0.00013893 524.2481402437483 51.657 0.58778 54.866 54.639 55.227 3.2086 48 30 2 0 0 0 0.82752 1 11498 11498 15.847 1.0089 1 122740 7135 11774 4407 4412 8982 8982 -0.0392368962495766 FDSKIDHW 8 Unmodified _FDSKIDHW_ 0 0 0 L1MC5a_dup9007|chr9:92498473-92499681:+|2.339659031807947|0.0994218458144309|4.56|151.0|48|1|anti-sense L1MC5a_dup9007|chr9:92498473-92499681:+|2.339659031807947|0.0994218458144309|4.56|151.0|48|1|anti-sense L1MC5a_dup9007|chr9:92498473-92499681:+|2.339659031807947|0.0994218458144309|4.56|151.0|48|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 524.248349 1046.48214 0.12228 6.4106E-05 -0.087873 -4.6068E-05 0.034408 1.8038E-05 524.2483366258649 51.556 0.61035 54.894 54.633 55.243 3.3386 0.01601 -5.2534E-06 NaN 15.847 45 30 2 NaN NaN NaN NaN 0 NaN NaN 0 86706 7136 11774 4407 4412 -0.0392368962495766 FDSLLLHQY 9 Unmodified _FDSLLLHQY_ 0 0 0 REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|34|1|anti-sense REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 568.293701171875 2 568.292756 1134.57096 0.49651 0.00028217 -0.11653 -6.6225E-05 0.37998 0.00021594 568.2928013485711 66.107 0.48627 69.559 69.339 69.825 3.4516 44 32 2 0 0 0 0.42249 2 15100 15100;15163 6.7232 2.7788 1 145860 + 7137 26397 4408 4413 8983;8984 8983 0.009057256147116277 FDSLLLHQY 9 Unmodified _FDSLLLHQY_ 0 0 0 REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|34|1|anti-sense REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.292724609375 2 568.292756 1134.57096 0.51155 0.00029071 0.015488 8.8019E-06 0.52704 0.00029951 568.2927304698264 65.981 0.63069 69.468 69.132 69.763 3.4866 60 42 2 0 0 0 0.16559 3 15028 14989;15028;15070 24.021 6.5779 1 260030 + 7138 26397 4408 4413 8985;8986;8987 8986 0.009057256147116277 FDSLLLHQY 9 Unmodified _FDSLLLHQY_ 0 0 0 REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|34|1|anti-sense REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.2933349609375 2 568.292756 1134.57096 0.49267 0.00027998 0.14476 8.2267E-05 0.63743 0.00036225 568.2927667104328 65.827 0.60042 69.334 69.069 69.67 3.5077 69 39 2 0 0 0 0.16559 2 14899 14899;14949 24.021 5.8742 1 176430 + 7139 26397 4408 4413 8988;8989 8988 0.009057256147116277 FDSTLLFKQ 9 Unmodified _FDSTLLFKQ_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.7952880859375 2 549.795132 1097.57571 0.4372 0.00024037 0.18451 0.00010144 0.6217 0.00034181 549.7951628947446 58.89 0.76 62.307 61.994 62.754 3.4171 131 52 3 0 0 0 0.31407 1 13658 13658 13.042 4.4492 1 567180 7140 11280 4409 4414 8990 8990 0.030826097574845335 FDSTLLFKQ 9 Unmodified _FDSTLLFKQ_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.7953491210938 2 549.795132 1097.57571 0.49688 0.00027318 -0.0050291 -2.765E-06 0.49185 0.00027042 549.7950344382263 59.24 0.79752 62.513 62.119 62.917 3.2738 134 54 3 0 0 0 0.31407 2 13783 13783;13825 13.042 4.4492 1 538170 7141 11280 4409 4414 8991;8992 8991 0.030826097574845335 FDSTLLFKQ 9 Unmodified _FDSTLLFKQ_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 549.7948608398438 2 549.795132 1097.57571 0.49688 0.00027318 -0.0050291 -2.765E-06 0.49185 0.00027042 549.7950344382263 59.24 0.79752 62.513 62.119 62.917 3.2738 134 54 3 0 0 0 0.1154 1 13744 13744 13.042 6.3193 1 538170 7142 11280 4409 4414 8993 8993 0.030826097574845335 FDSTLLFKQ 9 Unmodified _FDSTLLFKQ_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.7952270507812 2 549.795132 1097.57571 0.34447 0.00018939 0.14996 8.2446E-05 0.49443 0.00027184 549.7951097938491 59.365 1.0716 62.53 62.035 63.107 3.1651 131 68 3 0 0 0 0.31407 1 13890 13890 13.042 4.4492 1 404390 7143 11280 4409 4414 8994 8994 0.030826097574845335 FDSTLLFKQ 9 Unmodified _FDSTLLFKQ_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|44|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 549.7952270507812 2 549.795132 1097.57571 0.34447 0.00018939 0.14996 8.2446E-05 0.49443 0.00027184 549.7951097938491 59.365 1.0716 62.53 62.035 63.107 3.1651 131 68 3 0 0 0 0.10301 1 13852 13852 18.146 7.3224 1 404390 7144 11280 4409 4414 8995 8995 0.030826097574845335 FDTKDLVL 8 Unmodified _FDTKDLVL_ 0 0 0 REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|23|1|sense REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|23|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 475.7632751464844 2 475.7633 949.512048 0.073367 3.4905E-05 -0.52011 -0.00024745 -0.44674 -0.00021254 475.76313725372444 68.365 0.34187 71.635 71.375 71.717 3.2696 52 29 2 0 0 0 0.82752 1 16553 16553 10.824 0.75 1 100260 + 7145 24005 4410 4415 8996 8996 0.0352724932035926 FDTKDLVL 8 Unmodified _FDTKDLVL_ 0 0 0 REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|23|1|sense REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|23|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 475.7633 949.512048 0.079539 3.7842E-05 -0.72407 -0.00034449 -0.64453 -0.00030664 475.7631075412961 68.196 0.52191 71.56 71.326 71.848 3.3646 -0.018209 -0.00015953 NaN 10.824 71 42 2 NaN NaN NaN NaN 0 NaN NaN 0 83538 + 7146 24005 4410 4415 0.0352724932035926 FDTKDLVL 8 Unmodified _FDTKDLVL_ 0 0 0 REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|23|1|sense REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|23|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 475.7633 949.512048 0.035646 1.6959E-05 -0.36073 -0.00017162 -0.32508 -0.00015466 475.7632791927356 68.343 0.57661 71.541 71.283 71.86 3.1977 -0.037963 0.0001862 NaN 10.824 59 38 2 NaN NaN NaN NaN 0 NaN NaN 0 82357 + 7147 24005 4410 4415 0.0352724932035926 FDTQVCGEY 9 Unmodified _FDTQVCGEY_ 0 0 0 REV__L1ME4c_dup6139|chr11:117166397-117166567:+|1.4743736492144723|0.1973986321983586|2.9|150.0|6|2|sense REV__L1ME4c_dup6139|chr11:117166397-117166567:+|1.4743736492144723|0.1973986321983586|2.9|150.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 531.2160034179688 2 531.215857 1060.41716 0.17883 9.4999E-05 0.13274 7.0514E-05 0.31157 0.00016551 531.2158871047263 45.165 0.60736 48.409 48.223 48.831 3.2441 72 40 2 0 0 0 0.37599 1 9558 9558 9.3831 0 1 136410 + 7148 28319 4411 4416 8997 8997 -0.1106305221310322 FDVLVLRY 8 Unmodified _FDVLVLRY_ 0 0 0 ENST00000509197.1_1_2:233310049-233312046:+|nuORF;ENST00000429283.2_1_2:233199223-233199517:+|nuORF;ENST00000433430.5_1_2:233196570-233200992:+|nuORF;ENST00000445090.5_1_2:233194598-233200857:+|nuORF;ENSG00000144535|ENST00000325385|DIS3L2 ENST00000509197.1_1_2:233310049-233312046:+|nuORF ENST00000509197.1_1_2:233310049-233312046:+|nuORF MSMS UPN48_class_I_Rep_1 5 512.7929077148438 2 512.794935 1023.57532 NaN NaN NaN NaN NaN NaN NaN 43.423 1 46.933 46.433 47.433 3.5103 0 0 0 0.39819 1 8149 8149 8.5933 0 1 7149 3359 4412 4417 8998 8998 0.06447234828260662 FDVNTHVYY 9 Unmodified _FDVNTHVYY_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-MSMS UPN47_class_I_Rep_2 3 579.2672729492188 2 579.266739 1156.51892 0.51728 0.00029965 -0.47626 -0.00027588 0.041022 2.3762E-05 579.2664249240777 54.537 0.62575 57.856 57.628 58.254 3.3187 45 29 2 0 0 0 0.26948 1 12371 12371 15.847 2.3393 1 96853 7150 16841 4413 4418 8999 8999 -0.05307437799046966 FDVQLPHTAPV 11 Unmodified _FDVQLPHTAPV_ 0 0 0 PTGIS|p.Y115Tfs*10|1|0.04|ENSG00000124212|chr20:49547875-49547875|A/-|frameshift_variant PTGIS|p.Y115Tfs*10|1|0.04|ENSG00000124212|chr20:49547875-49547875|A/-|frameshift_variant PTGIS|p.Y115Tfs*10|1|0.04|ENSG00000124212|chr20:49547875-49547875|A/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 612.3246459960938 2 612.324588 1222.63462 NaN NaN NaN NaN NaN NaN NaN 62.69 1 62.69 62.19 63.19 0 0 0 0 0.33232 1 14030 14030 10.151 0 1 7151 16900 4414 4419 9000 9000 0.032210860517807305 FDVRLFFG 8 Unmodified _FDVRLFFG_ 0 0 0 REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 500.7376403808594 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 115.92 1 119.41 118.91 119.91 3.4965 0 0 0 0.40738 1 28282 28282 0.79363 0 1 + 7152 25594 4415 4420 9001 9001 0.01802392622721527 FDVRLFFG 8 Unmodified _FDVRLFFG_ 0 0 0 REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 500.7672424316406 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 31.701 1 35 34.5 35.5 3.2991 0 0 0 0.40738 1 5436 5436 0.79363 0 1 + 7153 25594 4415 4420 9002 9002 0.01802392622721527 FDVRLFFG 8 Unmodified _FDVRLFFG_ 0 0 0 REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 500.7657470703125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 112.12 1 115.75 115.25 116.25 3.6321 0 0 0 0.40738 1 27203 27203 0.79363 0 1 + 7154 25594 4415 4420 9003 9003 0.01802392622721527 FDVRLFFG 8 Unmodified _FDVRLFFG_ 0 0 0 REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 500.77880859375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 112.56 1 116.22 115.72 116.72 3.6614 0 0 0 0.40738 1 26745 26745 0.79363 0 1 + 7155 25594 4415 4420 9004 9004 0.01802392622721527 FDWFHKPY 8 Unmodified _FDWFHKPY_ 0 0 0 Tigger15a_dup737|chr2:159345585-159345975:+|1.4573152650334746|0.0724842918402441|4.33|151.0|22|1|anti-sense Tigger15a_dup737|chr2:159345585-159345975:+|1.4573152650334746|0.0724842918402441|4.33|151.0|22|1|anti-sense Tigger15a_dup737|chr2:159345585-159345975:+|1.4573152650334746|0.0724842918402441|4.33|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2681884765625 2 570.269084 1138.52362 NaN NaN NaN NaN NaN NaN NaN 72.488 1 75.868 75.368 76.368 3.3799 0 0 0 0.40404 1 17740 17740 5.2307 0.47466 1 7156 33242 4416 4421 9005 9005 -0.04010508865621887 FDWRVYLY 8 Unmodified _FDWRVYLY_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|268|3|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|268|3|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|268|3|anti-sense MSMS UPN47_class_I_Rep_1 2 581.2921142578125 2 581.290017 1160.56548 NaN NaN NaN NaN NaN NaN NaN 29.594 1 33.352 32.852 33.852 3.7578 0 0 0 0.40746 1 4723 4723 0.69038 0 1 7157 9368 4417 4422 9006 9006 -0.008379531770970061 FDYFSLTY 8 Unmodified _FDYFSLTY_ 0 0 0 REV__L1MA8_dup5736|chr9:112319429-112320110:+|2.0674358960896924|0.007322841567578|8.14|151.0|35|2|anti-sense REV__L1MA8_dup5736|chr9:112319429-112320110:+|2.0674358960896924|0.007322841567578|8.14|151.0|35|2|anti-sense MSMS UPN46_class_I_Rep_3 1 528.239990234375 2 528.239658 1054.46476 NaN NaN NaN NaN NaN NaN NaN 65.535 1 65.535 65.035 66.035 0 0 0 0 0.388 1 14818 14818 12.532 1.7076 1 + 7158 25562 4418 4423 9007 9007 -0.06029029950605036 FDYLPPVDSR 10 Unmodified _FDYLPPVDSR_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MSMS UPN47_class_I_Rep_3 4 604.80126953125 2 604.800946 1207.58734 NaN NaN NaN NaN NaN NaN NaN 67.024 1 70.216 69.716 70.716 3.1914 0 0 0 0.53105 1 16203 16203 1.3295 0 1 7159 3927 4419 4424 9008 9008 -0.008151932192276945 FEAFKFLKIL 10 Unmodified _FEAFKFLKIL_ 0 0 0 L1MB8_dup9466|chrX:118691581-118692240:-|1.3466310831011843|0.0635526430142669|4.41|151.0|29|2|anti-sense L1MB8_dup9466|chrX:118691581-118692240:-|1.3466310831011843|0.0635526430142669|4.41|151.0|29|2|anti-sense L1MB8_dup9466|chrX:118691581-118692240:-|1.3466310831011843|0.0635526430142669|4.41|151.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 628.3744506835938 2 628.376092 1254.73763 NaN NaN NaN NaN NaN NaN NaN 35.701 1 35.701 35.201 36.201 0 0 0 0 0.53105 1 6531 6531 0.40072 0.093686 1 7160 11043 4420 4425 9009 9009 0.12045198510418231 FEALKYPKF 9 Unmodified _FEALKYPKF_ 0 0 0 ENSG00000152078|ENST00000370203|TLCD4 ENSG00000152078|ENST00000370203|TLCD4 ENSG00000152078|ENST00000370203|TLCD4 MSMS UPN46_class_I_Rep_3 1 571.8163452148438 2 571.815867 1141.61718 NaN NaN NaN NaN NaN NaN NaN 44.464 1 44.464 43.964 44.964 0 0 0 0 0.39518 1 8964 8964 1.8442 0 1 7161 3611 4421 4426 9010 9010 0.05203790516770823 FEASWLEPQ 9 Unmodified _FEASWLEPQ_ 0 0 0 REV__ENSG00000095777|ENST00000642920|MYO3A REV__ENSG00000095777|ENST00000642920|MYO3A MSMS UPN47_class_I_Rep_2 3 553.7487182617188 2 553.761289 1105.50803 NaN NaN NaN NaN NaN NaN NaN 36.097 1 39.508 39.008 40.008 3.4114 0 0 0 0.38639 1 6732 6732 3.9444 0.3479 1 + 7162 18054 4422 4427 9011 9011 -0.04050840173340475 FECCWTMCD 9 Unmodified _FECCWTMCD_ 0 0 0 ENST00000300688.7_1_11:118279830-118279890:+|nuORF ENST00000300688.7_1_11:118279830-118279890:+|nuORF ENST00000300688.7_1_11:118279830-118279890:+|nuORF MSMS UPN46_class_I_Rep_3 1 569.1771850585938 2 569.179049 1136.34354 NaN NaN NaN NaN NaN NaN NaN 40.518 1 40.518 40.018 41.018 0 0 0 0 0.4007 1 7868 7868 0.52476 0.12405 1 7163 6068 4423 4428 9012 9012 -0.21917383243112454 FECLIYILN 9 Unmodified _FECLIYILN_ 0 0 0 REV__ENST00000540743.1_1_12:10010036-10015170:-|nuORF REV__ENST00000540743.1_1_12:10010036-10015170:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.2943115234375 2 564.293911 1126.57327 NaN NaN NaN NaN NaN NaN NaN 26.208 1 29.774 29.274 30.274 3.5667 0 0 0 0.39428 1 3181 3181 2.0598 0 1 + 7164 22913 4424 4429 9013 9013 0.015044380281779013 FECQIKTLF 9 Unmodified _FECQIKTLF_ 0 0 0 REV__ENST00000323061.5_1_4:89618220-89618286:-|nuORF REV__ENST00000323061.5_1_4:89618220-89618286:-|nuORF MSMS UPN48_class_I_Rep_3 7 564.7918090820312 2 564.791535 1127.56852 NaN NaN NaN NaN NaN NaN NaN 118.05 1 121.67 121.17 122.17 3.6124 0 0 0 0.39428 1 28078 28078 2.0598 0 1 + 7165 21746 4425 4430 9014 9014 0.00983553885407673 FECSDFPRK 9 Unmodified _FECSDFPRK_ 0 0 0 L1MB4_dup570|chr1:246610313-246611413:-|1.244035913289499|0.0225732244909247|5.78|151.0|63|3|anti-sense L1MB4_dup570|chr1:246610313-246611413:-|1.244035913289499|0.0225732244909247|5.78|151.0|63|3|anti-sense L1MB4_dup570|chr1:246610313-246611413:-|1.244035913289499|0.0225732244909247|5.78|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.76025390625 2 564.760766 1127.50698 NaN NaN NaN NaN NaN NaN NaN 115.05 1 118.69 118.19 119.19 3.6433 0 0 0 0.38478 1 27371 27371 4.3292 0.38484 1 7166 10538 4426 4431 9015 9015 -0.0516737781390475 FEDAAEIRL 9 Unmodified _FEDAAEIRL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_1 5 532.2744750976562 2 532.274564 1062.53457 0.35624 0.00018962 -0.14594 -7.7679E-05 0.2103 0.00011194 532.2744418202792 53.535 0.51374 57.054 56.866 57.38 3.5192 48 38 2 0 0 0 0.12795 2 11273 11234;11273 28.495 15.452 1 91741 7167 2105 4427 4432 9016;9017 9017 0.0058084871798200766 FEDAAEIRL 9 Unmodified _FEDAAEIRL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MSMS UPN48_class_I_Rep_2 6 532.2747192382812 2 532.274564 1062.53457 NaN NaN NaN NaN NaN NaN NaN 53.491 1 57.101 56.601 57.601 3.6098 0 0 0 0.081356 1 11216 11216 28.495 15.452 1 7168 2105 4427 4432 9018 9018 0.0058084871798200766 FEDAAEIRL 9 Unmodified _FEDAAEIRL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MATCH UPN48_class_I_Rep_3 7 2 532.274564 1062.53457 0.3677 0.00019572 -0.3681 -0.00019593 -0.00040445 -2.1528E-07 532.2744097697697 53.545 0.5432 57.129 56.906 57.45 3.5836 0.037409 -7.398E-05 NaN 28.495 55 43 2 NaN NaN NaN NaN 0 NaN NaN 0 75453 7169 2105 4427 4432 0.0058084871798200766 FEEDEHLQR 9 Unmodified _FEEDEHLQR_ 0 0 0 REV__ENST00000504849.5_1_4:39324953-39367861:-|nuORF REV__ENST00000504849.5_1_4:39324953-39367861:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.35205078125 2 601.775459 1201.53637 NaN NaN NaN NaN NaN NaN NaN 75.859 1 75.859 75.359 76.359 0 0 0 0 0.39518 1 17664 17664 1.8442 0 1 + 7170 17637 4428 4433 9019 9019 -0.05634142264057118 FEEELTFW 8 Unmodified _FEEELTFW_ 0 0 0 KCNC4|p.E274Rfs*2|1|0.06|ENSG00000116396|chr1:110223103-110223103|G/-|frameshift_variant;nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4 KCNC4|p.E274Rfs*2|1|0.06|ENSG00000116396|chr1:110223103-110223103|G/-|frameshift_variant KCNC4|p.E274Rfs*2|1|0.06|ENSG00000116396|chr1:110223103-110223103|G/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 550.7493286132812 2 550.75039 1099.48623 NaN NaN NaN NaN NaN NaN NaN 86.845 1 86.845 86.345 87.345 0 0 0 0 0.40746 1 20778 20778 0.69038 0 1 7171 2180 4429 4434 9020 9020 -0.05953644921896739 FEEFLHFH 8 Unmodified _FEEFLHFH_ 0 0 0 L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|163|2|anti-sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|163|2|anti-sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|163|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.2582397460938 2 553.258717 1104.50288 -0.10161 -5.6219E-05 -0.50711 -0.00028056 -0.60872 -0.00033678 553.2585334764361 35.805 1.0636 39.059 38.619 39.683 3.2547 143 70 3 0 0 0 0.82752 1 6607 6607 14.582 0.67564 1 216650 7172 15192 4430 4435 9021 9021 -0.045190992452944556 FEEKFTRYF 9 Unmodified _FEEKFTRYF_ 0 0 0 REV__L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|48|3|sense REV__L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|48|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 422.8765869140625 3 422.876634 1265.60807 0.0089108 3.7682E-06 0.028601 1.2095E-05 0.037512 1.5863E-05 422.87659495138803 43.322 1.9813 47.083 46.604 48.586 3.7617 425 149 4 0 0 0 0.17897 1 8223 8223 16.566 2.1605 1 2236100 + 7173 30568 4431 4436 9022 9022 -0.014106028395417525 FEEKFTRYF 9 Unmodified _FEEKFTRYF_ 0 0 0 REV__L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|48|3|sense REV__L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|48|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.8768005371094 3 422.876634 1265.60807 0.030383 1.2848E-05 -0.0051795 -2.1903E-06 0.025203 1.0658E-05 422.87656675165937 43.492 1.7303 47.13 46.654 48.385 3.6385 383 124 4 0 0 0 0.36392 1 8339 8339 6.6304 1.5829 1 2102500 + 7174 30568 4431 4436 9023 9023 -0.014106028395417525 FEFEPFLQ 8 Unmodified _FEFEPFLQ_ 0 0 0 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 MSMS UPN48_class_I_Rep_1 5 528.756103515625 2 528.755475 1055.4964 NaN NaN NaN NaN NaN NaN NaN 91.78 1 95.406 94.906 95.906 3.626 0 0 0 0.36226 1 22055 22055 19.257 8.4331 1 + 7175 17734 4432 4437 9024 9024 -0.029130371966630264 FEFEPFLQ 8 Unmodified _FEFEPFLQ_ 0 0 0 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 MSMS UPN48_class_I_Rep_1 5 528.75537109375 2 528.755475 1055.4964 NaN NaN NaN NaN NaN NaN NaN 91.899 1 95.525 95.025 96.025 3.626 0 0 0 0.24337 1 22088 22088 43.858 22.112 1 + 7176 17734 4432 4437 9025 9025 -0.029130371966630264 FEFEPFLQ 8 Unmodified _FEFEPFLQ_ 0 0 0 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 MULTI-MSMS UPN48_class_I_Rep_3 7 528.7560424804688 2 528.755475 1055.4964 0.48566 0.00025679 0.028556 1.5099E-05 0.51421 0.00027189 528.7556229273355 91.759 0.12285 95.623 95.514 95.637 3.8634 20 15 2 0 0 0 0.82752 1 21757 21757 14.838 5.4551 1 138820 + 7177 17734 4432 4437 9026 9026 -0.029130371966630264 FEFEPFLQ 8 Unmodified _FEFEPFLQ_ 0 0 0 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 REV__nc|ENSG00000063761|Q86TW2-3|ADCK1 MSMS UPN48_class_I_Rep_3 7 528.7559814453125 2 528.755475 1055.4964 NaN NaN NaN NaN NaN NaN NaN 91.603 1 95.466 94.966 95.966 3.8634 0 0 0 0.27177 1 21724 21724 36.127 17.981 1 + 7178 17734 4432 4437 9027 9027 -0.029130371966630264 FEFIIPESY 9 Unmodified _FEFIIPESY_ 0 0 0 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 ENSG00000177485|ENST00000557385|ZBTB33 MSMS UPN46_class_I_Rep_3 1 572.7819213867188 2 572.78169 1143.54883 NaN NaN NaN NaN NaN NaN NaN 90.408 1 90.408 89.908 90.908 0 0 0 0 0.31276 1 21802 21802 10.074 2.1638 1 7179 4794 4433 4438 9028 9028 -0.017204988537059762 FEFLIYFGY 9 Unmodified _FEFLIYFGY_ 0 0 0 L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|38|1|anti-sense;L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|264|2|anti-sense;L1MA7_dup8170|chr20:8510858-8511984:-|1.9174597605676795|0.0621711103100813|4.95|151.0|88|3|anti-sense L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|38|1|anti-sense L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_2 6 599.7937622070312 2 599.794601 1197.57465 NaN NaN NaN NaN NaN NaN NaN 53.474 1 57.084 56.584 57.584 3.6098 0 0 0 0.39428 1 11211 11211 2.0598 0 1 7180 10038 4434 4439 9029 9029 -0.01623604611427254 FEFPNKVVL 9 Unmodified _FEFPNKVVL_ 0 0 0 ENST00000470204.2_1_2:114476824-114486999:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5 ENST00000470204.2_1_2:114476824-114486999:-|nuORF ENST00000470204.2_1_2:114476824-114486999:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 546.8080444335938 2 546.808042 1091.60153 0.51394 0.00028103 0.55417 0.00030302 1.0681 0.00058405 546.8079367918334 67.144 0.20811 70.596 70.509 70.717 3.4516 17 13 2 0 0 0 0.26468 1 15433 15433 16.149 6.766 1 75070 7181 2106 4435 4440 9030 9030 0.059395039997752974 FEFPNKVVL 9 Unmodified _FEFPNKVVL_ 0 0 0 ENST00000470204.2_1_2:114476824-114486999:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5 ENST00000470204.2_1_2:114476824-114486999:-|nuORF ENST00000470204.2_1_2:114476824-114486999:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 546.8085327148438 2 546.808042 1091.60153 0.50305 0.00027507 -0.60385 -0.00033019 -0.1008 -5.5118E-05 546.8076166355843 67.014 0.43937 70.51 70.389 70.829 3.4964 32 26 2 0 0 0 0.37599 1 15358 15358 9.3831 3.6513 1 108810 7182 2106 4435 4440 9031 9031 0.059395039997752974 FEFPNKVVL 9 Unmodified _FEFPNKVVL_ 0 0 0 ENST00000470204.2_1_2:114476824-114486999:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5 ENST00000470204.2_1_2:114476824-114486999:-|nuORF ENST00000470204.2_1_2:114476824-114486999:-|nuORF MSMS UPN48_class_I_Rep_3 7 546.8073120117188 2 546.808042 1091.60153 NaN NaN NaN NaN NaN NaN NaN 66.96 1 70.468 69.968 70.968 3.5077 0 0 0 0.38916 1 15250 15250 3.2813 0 1 7183 2106 4435 4440 9032 9032 0.059395039997752974 FEFVGEPEL 9 Unmodified _FEFVGEPEL_ 0 0 0 ENSG00000106268|ENST00000356714|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-1|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 MULTI-MSMS UPN48_class_I_Rep_1 5 533.7583618164062 2 533.758215 1065.50188 0.36748 0.00019614 0.089813 4.7938E-05 0.45729 0.00024408 533.7582324785232 76.599 0.30541 80.109 79.992 80.297 3.5102 47 35 2 0 0 0 0.36392 1 18173 18173 10.074 6.1295 1 151390 7184 1778 4436 4441 9033 9033 -0.028253584048343328 FEFVGEPEL 9 Unmodified _FEFVGEPEL_ 0 0 0 ENSG00000106268|ENST00000356714|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-1|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 MULTI-MSMS UPN48_class_I_Rep_2 6 533.7587280273438 2 533.758215 1065.50188 0.43328 0.00023127 0.12554 6.701E-05 0.55882 0.00029828 533.7583264822518 76.411 0.25288 80.012 79.848 80.101 3.6011 45 31 2 0 0 0 0.36392 1 18045 18045 10.074 5.7447 1 104850 7185 1778 4436 4441 9034 9034 -0.028253584048343328 FEFVGEPEL 9 Unmodified _FEFVGEPEL_ 0 0 0 ENSG00000106268|ENST00000356714|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-1|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 MULTI-MSMS UPN48_class_I_Rep_3 7 533.7584228515625 2 533.758215 1065.50188 0.57334 0.00030602 -0.40808 -0.00021782 0.16525 8.8204E-05 533.7580850362891 76.431 0.4386 80.014 79.822 80.261 3.5831 66 51 2 0 0 0 0.30034 1 17998 17998 13.906 7.1829 1 111410 7186 1778 4436 4441 9035 9035 -0.028253584048343328 FEFVGEPEL 9 Unmodified _FEFVGEPEL_ 0 0 0 ENSG00000106268|ENST00000356714|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-1|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 533.758215 1065.50188 0.36779 0.00019631 0.049356 2.6344E-05 0.41715 0.00022266 533.7582255177695 76.457 0.074799 79.967 79.909 79.984 3.5102 -0.030734 0.00025414 NaN 13.906 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 61317 7187 1778 4436 4441 -0.028253584048343328 FEFVGEPEL 9 Unmodified _FEFVGEPEL_ 0 0 0 ENSG00000106268|ENST00000356714|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-1|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 ENSG00000106268|ENST00000356714|NUDT1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 533.758215 1065.50188 0.43332 0.00023129 -0.19863 -0.00010602 0.23469 0.00012527 533.7582452619704 76.578 0.16421 80.19 80.111 80.276 3.6116 0.040623 -0.00023623 NaN 10.074 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 83014 7188 1778 4436 4441 -0.028253584048343328 FEHIVTQF 8 Unmodified _FEHIVTQF_ 0 0 0 ENST00000491027.5_1_7:105903822-105925330:-|nuORF;ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENST00000491027.5_1_7:105903822-105925330:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 510.7608337402344 2 510.761092 1019.50763 0.23392 0.00011948 -0.062215 -3.1777E-05 0.17171 8.7701E-05 510.76102504420084 57.303 0.54529 57.303 57.075 57.62 0 92 57 2 0 0 0 0.82752 1 12579 12579 37.974 3.8716 1 253220 7189 1763 4437 4442 9036 9036 -0.001342151025255589 FEHTLSSY 8 Unmodified _FEHTLSSY_ 0 0 0 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 MSMS UPN46_class_I_Rep_3 1 492.2269287109375 2 492.227082 982.439611 NaN NaN NaN NaN NaN NaN NaN 40.499 1 40.499 39.999 40.999 0 0 0 0 0.35163 1 7863 7863 21.747 0 1 7190 988 4438 4443 9037 9037 -0.05231084753177129 FEHTLSSY 8 Unmodified _FEHTLSSY_ 0 0 0 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 MSMS UPN46_class_I_Rep_3 1 492.5956115722656 2 492.227082 982.439611 NaN NaN NaN NaN NaN NaN NaN 40.674 1 40.674 40.174 41.174 0 0 0 0 0.37214 1 7910 7910 16.942 0 1 7191 988 4438 4443 9038 9038 -0.05231084753177129 FEIIRQQSL 9 Unmodified _FEIIRQQSL_ 0 0 0 REV__MER20_dup340|chr1:52067773-52067990:-|1.1054047891182786|0.018875390525469|5.87|151.0|3|1|sense REV__MER20_dup340|chr1:52067773-52067990:-|1.1054047891182786|0.018875390525469|5.87|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.31787109375 2 567.319306 1132.62406 0.41218 0.00023384 -0.19113 -0.00010843 0.22105 0.00012541 567.3190481444375 46.123 0.7818 49.642 49.244 50.026 3.5192 67 52 2 0 0 0 0.43153 1 8913 8913 6.2058 0 1 185900 + 7192 31156 4439 4444 9039 9039 0.06305103397380662 FEIIVHQY 8 Unmodified _FEIIVHQY_ 0 0 0 ENST00000474368.1_1_21:42773880-42775423:+|nuORF;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2 ENST00000474368.1_1_21:42773880-42775423:+|nuORF ENST00000474368.1_1_21:42773880-42775423:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 524.7767333984375 2 524.776742 1047.53893 0.25178 0.00013213 -0.1576 -8.2704E-05 0.094182 4.9425E-05 524.7765887157158 59.321 0.39629 59.321 59.106 59.503 0 68 41 2 0 0 0 0.82752 2 13084 13084;13115 56.177 18.203 1 303830 7193 5000 4440 4445 9040;9041 9040 0.01706357931561797 FEIKNRGEL 9 Unmodified _FEIKNRGEL_ 0 0 0 L1MDa_dup3920|chrX:47837511-47838787:-|1.3232964726650325|0.1549784064404473|3.09|151.0|36|3|sense L1MDa_dup3920|chrX:47837511-47838787:-|1.3232964726650325|0.1549784064404473|3.09|151.0|36|3|sense L1MDa_dup3920|chrX:47837511-47838787:-|1.3232964726650325|0.1549784064404473|3.09|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.3034057617188 2 553.303655 1104.59276 0.51424 0.00028453 -1.8258 -0.0010102 -1.3115 -0.00072567 553.3028324408047 58.224 0.63108 61.505 61.277 61.908 3.2818 48 38 2 0 0 0 0.26468 1 13435 13435 16.149 2.2431 1 115750 7194 12120 4441 4446 9042 9042 0.04464530363270569 FEITPPVVL 9 Unmodified _FEITPPVVL_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000560329.1_1_15:73192182-73192437:-|nuORF;ENST00000423757.1_1_7:149031294-149031639:+|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 507.79705810546875 2 507.797143 1013.57973 0.23266 0.00011815 -0.26738 -0.00013577 -0.034712 -1.7627E-05 507.7970733688342 85.591 0.181 89.197 89.137 89.318 3.6059 30 18 3 0 0 0 0.26948 1 20474 20474 15.847 4.2069 1 75404 7195 4909;6766 4442 4447 9043 9043 0.07348699251178914 FEITPPVVL 9 Unmodified _FEITPPVVL_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000560329.1_1_15:73192182-73192437:-|nuORF;ENST00000423757.1_1_7:149031294-149031639:+|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 508.21148681640625 2 507.797143 1013.57973 0.29781 0.00015122 -0.19942 -0.00010126 0.098389 4.9962E-05 507.7970435028699 85.366 0.35457 89.115 89.047 89.402 3.7494 58 42 2 0 0 0 0.10699 1 20281 20281 15.847 4.2069 1 114860 7196 4909;6766 4442 4447 9044 9044 0.07348699251178914 FEITPPVVLR 10 Unmodified _FEITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_2 6 585.8477783203125 2 585.847699 1169.68084 NaN NaN NaN NaN NaN NaN NaN 67.679 1 71.175 70.675 71.675 3.4964 0 0 0 0.53105 1 15556 15556 7.609 1.8255 1 7197 4909 4443 4448 9045 9045 0.10279150953874705 FEITPPVVLR 10 Unmodified _FEITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_3 7 585.84814453125 2 585.847699 1169.68084 NaN NaN NaN NaN NaN NaN NaN 67.441 1 70.948 70.448 71.448 3.5077 0 0 0 0.53105 1 15395 15395 20.415 8.8967 1 7198 4909 4443 4448 9046 9046 0.10279150953874705 FEKDKYDFR 9 Unmodified _FEKDKYDFR_ 0 0 0 REV__ENSG00000255974|ENST00000301141|CYP2A6 REV__ENSG00000255974|ENST00000301141|CYP2A6 MULTI-SECPEP UPN46_class_I_Rep_3 1 416.227783203125 3 416.540022 1246.59824 0.045531 1.8965E-05 1.0754 0.00044793 1.1209 0.0004669 416.54035635399737 46.817 0.10447 46.817 46.759 46.864 0 10 9 2 0 0 0 0.12476 1 9618 9618 0.77653 0 1 50150 + 7199 21382 4444 4449 9047 9047 -0.015197908449408715 FEKGEQTFK 9 Unmodified _FEKGEQTFK_ 0 0 0 nc|ENSG00000164188|Q86VV4-3|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-2|RANBP3L nc|ENSG00000164188|Q86VV4-3|RANBP3L nc|ENSG00000164188|Q86VV4-3|RANBP3L MULTI-MSMS UPN48_class_I_Rep_2 6 557.2816772460938 2 557.282389 1112.55022 0.43176 0.00024061 0.044082 2.4566E-05 0.47584 0.00026518 557.2823008556405 42.261 0.63141 46.019 45.741 46.373 3.7579 121 60 3 0 0 0 0.28552 1 7827 7827 14.838 0 1 182650 7200 4094 4445 4450 9048 9048 -0.001548647649542545 FEKGITYHGW 10 Unmodified _FEKGITYHGW_ 0 0 0 REV__ENSG00000243910|ENST00000490341|TUBA4B REV__ENSG00000243910|ENST00000490341|TUBA4B MULTI-MSMS UPN48_class_I_Rep_1 5 619.3037719726562 2 619.303655 1236.59276 0.57693 0.00035729 -0.39836 -0.00024671 0.17857 0.00011059 619.3031757140169 59.755 0.48421 63.235 63.016 63.501 3.4801 52 37 2 0 0 0 0.56354 1 13202 13202 1.3295 0.13619 1 96739 + 7201 21337 4446 4451 9049 9049 -0.016074696367240904 FEKLSLYSV 9 Unmodified _FEKLSLYSV_ 0 0 0 ENSG00000043039|ENST00000281437|BARX2 ENSG00000043039|ENST00000281437|BARX2 ENSG00000043039|ENST00000281437|BARX2 MSMS UPN48_class_I_Rep_2 6 543.2981567382812 2 543.297507 1084.58046 NaN NaN NaN NaN NaN NaN NaN 34.062 1 37.723 37.223 38.223 3.6607 0 0 0 0.39518 1 5449 5449 1.8442 0.19162 1 7202 875 4447 4452 9050 9050 0.04155493900248075 FEKSQIGNLI 10 Unmodified _FEKSQIGNLI_ 0 0 0 REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|76|1|anti-sense REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|76|1|anti-sense MSMS UPN48_class_I_Rep_2 6 574.8207397460938 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 69.881 1 73.403 72.903 73.903 3.5216 0 0 0 0.53105 1 16219 16219 4.5289 0.33936 1 + 7203 30955 4448 4453 9051 9051 0.0558168367754206 FEKYLERR 8 Unmodified _FEKYLERR_ 0 0 0 ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2;nc|ENSG00000073150|Q96RD6-2|PANX2 ENSG00000073150|ENST00000395842|PANX2 ENSG00000073150|ENST00000395842|PANX2 MULTI-MSMS UPN48_class_I_Rep_2 6 570.8121337890625 2 570.811648 1139.60874 0.41508 0.00023693 -0.036813 -2.1013E-05 0.37826 0.00021592 570.8115362692107 42.903 0.69392 46.661 46.276 46.97 3.7579 115 57 3 0 0 0 0.82752 1 7890 7890 0.69038 0 1 312340 7204 1112 4449 4454 9052 9052 0.0445223660017291 FEKYREQF 8 Unmodified _FEKYREQF_ 0 0 0 REV__L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|32|1|anti-sense REV__L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_2 6 573.780517578125 2 573.782556 1145.55056 NaN NaN NaN NaN NaN NaN NaN 70.812 1 74.348 73.848 74.848 3.5359 0 0 0 0.40643 1 16490 16490 2.0598 0.21551 1 + 7205 26908 4450 4455 9053 9053 -0.016394450450889053 FELALTCLTV 10 Unmodified _FELALTCLTV_ 0 0 0 Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|37|3|anti-sense Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|37|3|anti-sense Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.29931640625 2 555.299193 1108.58383 NaN NaN NaN NaN NaN NaN NaN 82.862 1 86.199 85.699 86.699 3.337 0 0 0 0.53105 1 20773 20773 5.7319 0 1 7206 33223 4451 4456 9054 9054 0.033884206825632646 FELASGPVKRL 11 Unmodified _FELASGPVKRL_ 0 0 0 nc|ENSG00000113448|Q08499-4|PDE4D nc|ENSG00000113448|Q08499-4|PDE4D nc|ENSG00000113448|Q08499-4|PDE4D MULTI-MSMS UPN46_class_I_Rep_3 1 406.23944091796875 3 406.239796 1215.69756 0.020545 8.3464E-06 -0.56742 -0.00023051 -0.54687 -0.00022216 406.23939859776993 47.896 0.16805 47.896 47.835 48.003 0 21 18 2 0 0 0 0.65674 1 9947 9947 2.6312 0.88896 1 98255 7207 16664 4452 4457 9055 9055 0.09833651839858248 FELEYFYEE 9 Unmodified _FELEYFYEE_ 0 0 0 ENST00000477110.6_1_X:299337-302121:-|nuORF;nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENST00000468169.6_1_X:299440-306311:-|nuORF;ENSG00000167393|ENST00000390665|PPP2R3B ENST00000477110.6_1_X:299337-302121:-|nuORF ENST00000477110.6_1_X:299337-302121:-|nuORF MSMS UPN46_class_I_Rep_3 1 634.7720947265625 2 634.771519 1267.52849 NaN NaN NaN NaN NaN NaN NaN 12.249 1 12.249 11.749 12.749 0 0 0 0 0.4029 1 63 63 0 0 1 7208 4300 4453 4458 9056 9056 -0.09457714304198817 FELLEKKTY 9 Unmodified _FELLEKKTY_ 0 0 0 REV__HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|134|3|sense REV__HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|134|3|sense MSMS UPN48_class_I_Rep_1 5 585.8244018554688 2 585.823889 1169.63323 NaN NaN NaN NaN NaN NaN NaN 73.888 1 77.369 76.869 77.869 3.4812 0 0 0 0.37692 1 17437 17437 6.2058 0 1 + 7209 23865 4454 4459 9057 9057 0.055194519630504146 FELWREIF 8 Unmodified _FELWREIF_ 0 0 0 REV__L1PA6_dup3755|chrX:96809519-96815659:-|5.356200008406083|0.0992016793176227|5.75|151.0|323|3|anti-sense REV__L1PA6_dup3755|chrX:96809519-96815659:-|5.356200008406083|0.0992016793176227|5.75|151.0|323|3|anti-sense MSMS UPN48_class_I_Rep_3 7 570.2955322265625 2 570.297842 1138.58113 NaN NaN NaN NaN NaN NaN NaN 58.672 1 62.195 61.695 62.695 3.5231 0 0 0 0.40501 1 12736 12736 3.9444 0 1 + 7210 29892 4455 4460 9058 9058 0.01738333339926612 FEMEFCPCC 9 Unmodified _FEMEFCPCC_ 0 0 0 AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense;AluSq_dup9051|chr9:110254239-110254532:+|1.2008603294672118|0.1951238154777548|2.62|151.0|14|2|anti-sense AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense MSMS UPN47_class_I_Rep_1 2 554.6859130859375 2 554.683967 1107.35338 NaN NaN NaN NaN NaN NaN NaN 23.307 1 27.011 26.511 27.511 3.7042 0 0 0 0.4007 1 2860 2860 0.52476 0.066424 1 7211 238 4456 4461 9059 9059 -0.19600195237717344 FEMEFCPCC 9 Unmodified _FEMEFCPCC_ 0 0 0 AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense;AluSq_dup9051|chr9:110254239-110254532:+|1.2008603294672118|0.1951238154777548|2.62|151.0|14|2|anti-sense AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense AluSp_dup681|chr1:22058486-22058798:-|1.937991324846106|0.0328720879486834|5.88|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.685791015625 2 554.683967 1107.35338 NaN NaN NaN NaN NaN NaN NaN 23.01 1 26.57 26.07 27.07 3.5605 0 0 0 0.4007 1 2334 2334 0.52476 0 1 7212 238 4456 4461 9060 9060 -0.19600195237717344 FEMGPVFTL 9 Oxidation (M) _FEM(Oxidation (M))GPVFTL_ FEM(1)GPVFTL FEM(46)GPVFTL 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS UPN48_class_I_Rep_1 5 528.7570190429688 2 528.757161 1055.49977 0.34603 0.00018297 0.091779 4.8529E-05 0.43781 0.00023149 528.7570495684968 75.456 0.55435 78.955 78.762 79.316 3.4996 70 50 2 0 0 0 0.056917 1 17873 17873 46.021 19.137 1 126860 7213 5448 4457 4462 9061 9061 164 -0.025761104143157354 FEMGPVFTL 9 Oxidation (M) _FEM(Oxidation (M))GPVFTL_ FEM(1)GPVFTL FEM(52)GPVFTL 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS UPN48_class_I_Rep_2 6 528.7576293945312 2 528.757161 1055.49977 0.40641 0.00021489 -0.13894 -7.3466E-05 0.26747 0.00014143 528.7571196916292 75.416 0.13344 79.006 78.944 79.077 3.59 22 15 2 0 0 0 0.041849 1 17784 17784 52.268 31.815 1 118640 7214 5448 4457 4462 9062 9062 164 -0.025761104143157354 FEPLKQTIE 9 Unmodified _FEPLKQTIE_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000187775|ENST00000389840|DNAH17 ENSG00000007174|ENST00000262442|DNAH9;ENSG00000187775|ENST00000389840|DNAH17 ENSG00000007174|ENST00000262442|DNAH9 MULTI-SECPEP UPN47_class_I_Rep_1 2 552.8367919921875 2 552.800414 1103.58628 0.43026 0.00023785 -0.53029 -0.00029314 -0.10003 -5.5297E-05 552.8002779254253 61.106 0.2397 64.488 64.429 64.669 3.3815 20 16 2 0 0 0 0.11884 1 14348 14348 9.3831 9.3831 1 77084 7215 727;5206 4458 4463 9063 9063 0.03862592411906007 FEPLKQTIE 9 Unmodified _FEPLKQTIE_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000187775|ENST00000389840|DNAH17 ENSG00000007174|ENST00000262442|DNAH9;ENSG00000187775|ENST00000389840|DNAH17 ENSG00000007174|ENST00000262442|DNAH9 MULTI-SECPEP UPN47_class_I_Rep_1 2 552.8367919921875 2 552.800414 1103.58628 0.42825 0.00023674 -0.15473 -8.5535E-05 0.27352 0.0001512 552.8005685841781 61.34 0.1987 64.721 64.578 64.776 3.3815 16 14 2 0 0 0 0.11884 1 14348 14348 9.3831 9.3831 1 58919 7216 727;5206 4458 4463 9064 9064 0.03862592411906007 FEQVTIMDA 9 Unmodified _FEQVTIMDA_ 0 0 0 REV__KIF23|p.F195V|1|0.07|ENSG00000137807|chr15:69423178-69423178|T/G|missense_variant REV__KIF23|p.F195V|1|0.07|ENSG00000137807|chr15:69423178-69423178|T/G|missense_variant MSMS UPN47_class_I_Rep_2 3 527.2471313476562 2 527.2497 1052.48485 NaN NaN NaN NaN NaN NaN NaN 29.834 1 33.326 32.826 33.826 3.4923 0 0 0 0.39428 1 4833 4833 2.0598 0 1 + 7217 19245 4459 4464 9065 9065 -0.03929602282300948 FERALTQL 8 Unmodified _FERALTQL_ 0 0 0 REV__L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|166|2|anti-sense REV__L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|166|2|anti-sense MSMS UPN48_class_I_Rep_1 5 489.274658203125 2 489.274367 976.53418 NaN NaN NaN NaN NaN NaN NaN 47.851 1 51.373 50.873 51.873 3.5219 0 0 0 0.39996 1 9500 9500 7.9102 0.62092 1 + 7218 30679 4460 4465 9066 9066 0.04497473788796924 FERIRYILR 9 Unmodified _FERIRYILR_ 0 0 0 HAL1M8_dup88|chr1:173770711-173771267:+|1.422719081447034|0.1816538321717936|2.97|151.0|3|1|sense HAL1M8_dup88|chr1:173770711-173771267:+|1.422719081447034|0.1816538321717936|2.97|151.0|3|1|sense HAL1M8_dup88|chr1:173770711-173771267:+|1.422719081447034|0.1816538321717936|2.97|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 633.3784790039062 2 633.377489 1264.74043 NaN NaN NaN NaN NaN NaN NaN 81.207 1 84.694 84.194 85.194 3.4874 0 0 0 0.4007 1 20260 20260 0.52476 0.066424 1 7219 7952 4461 4466 9067 9067 0.11864466687939057 FERLNQQDLFT 11 Unmodified _FERLNQQDLFT_ 0 0 0 REV__L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|21|1|sense REV__L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|21|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 470.9403991699219 3 470.905253 1409.69393 0.13019 6.1306E-05 -2.8588 -0.0013462 -2.7286 -0.0012849 471.2381355859711 54.785 0.089569 58.293 58.236 58.326 3.5082 7 5 2 0 0 0 22.551 1 11640 11640 2.6312 1.3016 1 50465 + 7220 25742 4462 4467 9068 9068 0.005469372753395874 FERLRPADHL 10 Unmodified _FERLRPADHL_ 0 0 0 AluSx1_dup69445|chr11:33267929-33268237:+|1.6456423494886816|0.0354269703192628|5.54|151.0|7|2|sense AluSx1_dup69445|chr11:33267929-33268237:+|1.6456423494886816|0.0354269703192628|5.54|151.0|7|2|sense AluSx1_dup69445|chr11:33267929-33268237:+|1.6456423494886816|0.0354269703192628|5.54|151.0|7|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 417.92047119140625 3 418.563161 1252.66765 -0.11668 -4.8837E-05 -0.35941 -0.00015044 -0.47609 -0.00019927 418.56311956589906 43.084 0.55346 46.594 46.24 46.793 3.5103 52 39 2 0 0 0 0.84575 1 7956 7956 3.3196 0.58445 1 111970 7221 324 4463 4468 9069 9069 0.05142712894507895 FERNSKRR 8 Unmodified _FERNSKRR_ 0 0 0 REV__MER4B-int_dup1037|chr11:57728390-57729469:+|2.0845260881535763|0.0669951070365758|4.96|151.0|53|1|anti-sense REV__MER4B-int_dup1037|chr11:57728390-57729469:+|2.0845260881535763|0.0669951070365758|4.96|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 546.7399291992188 2 546.804688 1091.59482 NaN NaN NaN NaN NaN NaN NaN 23.442 1 27.085 26.585 27.585 3.6432 0 0 0 0.40625 1 2558 2558 2.3027 0 1 + 7222 31355 4464 4469 9070 9070 0.0526900389174898 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 525.3099365234375 3 525.309718 1572.90732 0.33149 0.00017413 0.11307 5.9398E-05 0.44456 0.00023353 525.309777184489 102.65 0.12199 102.65 102.53 102.66 0 16 12 2 0 0 0 0.68478 1 25028 25028 0.094841 0.011491 1 357000 7223 2397 4465 4470 9071 9071 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 525.3101196289062 3 525.309718 1572.90732 0.33173 0.00017426 0.73097 0.00038399 1.0627 0.00055825 525.309669999545 102.89 0.15494 102.89 102.86 103.02 0 19 11 3 0 0 0 0.68478 1 25116 25116 0.094841 0 1 1428900 7224 2397 4465 4470 9072 9072 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 525.3095703125 3 525.309718 1572.90732 0.33162 0.0001742 0.030793 1.6176E-05 0.36242 0.00019038 525.64412893033 103.19 0.045334 103.19 103.16 103.21 0 11 5 3 0 0 0 0.68478 1 25181 25181 0.094841 0 1 150760 7225 2397 4465 4470 9073 9073 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 525.6437377929688 3 525.309718 1572.90732 0.33152 0.00017415 -0.38913 -0.00020441 -0.057611 -3.0264E-05 525.3094305808754 100.6 0.1418 100.6 100.55 100.69 0 16 13 3 0 0 0 22.551 1 24513 24513 0.094841 0.011491 1 314570 7226 2397 4465 4470 9074 9074 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 525.30908203125 3 525.309718 1572.90732 0.43646 0.00022928 -0.024334 -1.2783E-05 0.41213 0.0002165 525.3096157111339 97.044 0.067673 100.82 100.77 100.84 3.7767 11 9 2 0 0 0 0.68478 1 24048 24048 0.094841 0 1 79386 7227 2397 4465 4470 9075 9075 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 525.6448974609375 3 525.309718 1572.90732 0.43706 0.00022959 0.20362 0.00010696 0.64068 0.00033656 525.6442919345154 99.105 0.14249 102.9 102.86 103 3.7926 26 18 2 0 0 0 0.68478 2 24520 24520;24528 0.094841 0.094841 1 242270 7228 2397 4465 4470 9076;9077 9076 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 525.3101196289062 3 525.309718 1572.90732 0.437 0.00022956 -0.39472 -0.00020735 0.042286 2.2213E-05 525.6440276392191 99.263 0.24626 103.06 102.99 103.24 3.7926 51 35 2 0 0 0 0.68478 2 24546 24546;24576 0.094841 0.011491 1 71528 7229 2397 4465 4470 9078;9079 9078 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.644287109375 3 525.309718 1572.90732 0.29323 0.00015404 -0.21915 -0.00011512 0.074078 3.8914E-05 525.3093530693249 96.174 0.15128 99.786 99.746 99.897 3.6124 26 18 2 0 0 0 0.68478 2 23163 23163;23178 0.094841 0 1 129560 7230 2397 4465 4470 9080;9081 9080 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3096313476562 3 525.309718 1572.90732 0.29317 0.000154 0.13705 7.1996E-05 0.43022 0.000226 525.3096649219041 96.82 0.30659 100.43 100.26 100.56 3.6088 52 31 2 0 0 0 0.68478 1 23318 23318 0.094841 0.011491 1 228980 7231 2397 4465 4470 9082 9082 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3097534179688 3 525.309718 1572.90732 0.29364 0.00015425 -0.012519 -6.5761E-06 0.28113 0.00014768 525.3095809860819 97.008 0.32783 100.62 100.53 100.86 3.6088 83 42 3 0 0 0 0.68478 3 23389 23389;23420;23449 0.094841 0.011491 1 179220 7232 2397 4465 4470 9083;9084;9085 9083 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3103637695312 3 525.309718 1572.90732 0.29312 0.00015398 -0.1001 -5.2586E-05 0.19302 0.00010139 525.3097057443628 97.252 0.16348 100.86 100.8 100.96 3.6088 29 19 2 0 0 0 0.68478 1 23481 23481 0.094841 0.011491 1 112790 7233 2397 4465 4470 9086 9086 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.64404296875 3 525.309718 1572.90732 0.29307 0.00015395 -0.19706 -0.00010352 0.096003 5.0431E-05 525.309574284799 97.454 0.25635 101.06 100.96 101.22 3.6088 58 33 2 0 0 0 0.68478 1 23527 23527 0.094841 0.011491 1 140620 7234 2397 4465 4470 9087 9087 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.64404296875 3 525.309718 1572.90732 0.29319 0.00015401 -0.12848 -6.7492E-05 0.16471 8.6521E-05 525.309684812698 97.703 0.21441 101.31 101.21 101.43 3.6088 32 24 2 0 0 0 0.68478 1 23571 23571 0.094841 0 1 83698 7235 2397 4465 4470 9088 9088 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3094482421875 3 525.309718 1572.90732 0.29299 0.00015391 -0.039296 -2.0643E-05 0.25369 0.00013327 525.3095459638937 98.471 0.55592 102.08 101.57 102.13 3.6065 116 70 2 0 0 0 0.68478 2 23652 23652;23688 0.094841 0.011491 1 609660 7236 2397 4465 4470 9089;9090 9089 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3099365234375 3 525.309718 1572.90732 0.29382 0.00015435 0.49691 0.00026103 0.79073 0.00041538 525.6442871823739 98.922 0.31796 102.53 102.46 102.77 3.6065 79 40 3 0 0 0 0.68478 1 23915 23915 0.094841 0.011491 1 692020 7237 2397 4465 4470 9091 9091 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3097534179688 3 525.309718 1572.90732 0.29315 0.000154 -0.094623 -4.9706E-05 0.19853 0.00010429 525.3095486660004 99.213 0.42776 102.82 102.74 103.17 3.6065 88 57 2 0 0 0 0.68478 2 23946 23946;23975 0.094841 0.011491 1 238090 7238 2397 4465 4470 9092;9093 9092 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 525.309718 1572.90732 0.33162 0.0001742 0.1793 9.4191E-05 0.51093 0.00026839 525.6443403455326 103.08 0.034744 103.08 103.07 103.1 0 0.011332 0.00081937 NaN 0.094841 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 69164 7239 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 525.309718 1572.90732 0.33145 0.00017412 0.067351 3.538E-05 0.3988 0.0002095 525.3096704105911 101.09 0.051285 101.09 101.07 101.12 0 -0.24419 0.00032175 NaN 0.094841 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 307650 7240 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 525.309718 1572.90732 0.33144 0.00017411 0.79873 0.00041958 1.1302 0.00059369 525.3101218539992 101.96 0.034637 101.96 101.95 101.98 0 -0.041598 0.0013943 NaN 0.094841 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 30685 7241 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 525.309718 1572.90732 0.33154 0.00017416 -0.051792 -2.7207E-05 0.27975 0.00014696 525.6441249288765 100.34 0.050652 100.34 100.31 100.36 0 -0.15256 -0.00011178 NaN 0.094841 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 70485 7242 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 525.309718 1572.90732 0.40921 0.00021496 -0.056844 -2.986E-05 0.35237 0.0001851 525.3096749573181 97.154 0.085999 100.57 100.5 100.59 3.4205 -0.14166 -1.2087E-05 NaN 0.094841 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 108240 7243 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 525.309718 1572.90732 0.29319 0.00015401 -0.12848 -6.7492E-05 0.16471 8.6521E-05 525.309684812698 97.703 0.21441 101.31 101.21 101.43 3.6088 -0.024426 1.3133E-05 NaN 0.094841 32 24 2 NaN NaN NaN NaN 0 NaN NaN 0 83698 7244 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.39389 0.00020691 0.014657 7.6996E-06 0.40854 0.00021461 525.3097390958866 97.379 0.084076 101.16 101.1 101.19 3.779 -0.0034041 0.0002646 NaN 0.094841 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 135000 7245 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.39404 0.00020699 -0.16945 -8.9011E-05 0.22459 0.00011798 525.3094866425279 97.54 0.21499 101.32 101.19 101.41 3.779 -0.017079 -5.1425E-05 NaN 0.094841 39 29 2 NaN NaN NaN NaN 0 NaN NaN 0 131060 7246 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.39483 0.00020741 0.097114 5.1015E-05 0.49195 0.00025843 525.30945938352 98.925 0.26834 102.7 102.58 102.85 3.7707 0.0667 0.00031629 NaN 0.094841 87 36 3 NaN NaN NaN NaN 0 NaN NaN 0 207080 7247 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.39416 0.00020706 0.068634 3.6054E-05 0.46279 0.00024311 525.3096677810369 96.973 0.34431 100.75 100.59 100.94 3.7804 0.037519 0.00018566 NaN 0.094841 72 44 2 NaN NaN NaN NaN 0 NaN NaN 0 150270 7248 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.3943 0.00020713 0.15374 8.076E-05 0.54804 0.00028789 525.6441505536701 96.745 0.38673 100.53 100.24 100.63 3.7804 0.031808 0.00021212 NaN 0.094841 66 48 2 NaN NaN NaN NaN 0 NaN NaN 0 265310 7249 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.4406 0.00023145 -0.13882 -7.2924E-05 0.30178 0.00015853 525.3096102472739 97.355 0.14902 101.26 101.18 101.33 3.9084 0.10209 2.273E-05 NaN 0.094841 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 179240 7250 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.44062 0.00023146 -0.31144 -0.0001636 0.12919 6.7864E-05 525.3094654730461 97.673 0.17197 101.58 101.45 101.62 3.9022 0.23894 -0.00027519 NaN 0.094841 29 24 2 NaN NaN NaN NaN 0 NaN NaN 0 102640 7251 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.43992 0.00023109 -0.2475 -0.00013002 0.19242 0.00010108 525.309512616828 98.655 0.75258 102.54 102.45 103.21 3.8839 -0.090294 -0.0002268 NaN 0.094841 180 107 2 NaN NaN NaN NaN 0 NaN NaN 0 921620 7252 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.44017 0.00023122 -0.32884 -0.00017274 0.11133 5.8483E-05 525.3094610239566 98.07 0.38091 101.97 101.68 102.07 3.9022 -0.032142 -0.00038265 NaN 0.094841 85 50 2 NaN NaN NaN NaN 0 NaN NaN 0 232080 7253 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.44163 0.00023199 -0.010927 -5.7403E-06 0.4307 0.00022625 525.3097534516533 96.775 0.36502 100.68 100.52 100.88 3.9084 -0.032973 6.0273E-05 NaN 0.094841 108 47 3 NaN NaN NaN NaN 0 NaN NaN 0 222520 7254 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.44203 0.0002322 -0.19 -9.9808E-05 0.25203 0.00013239 525.6440478584475 96.583 0.19553 100.49 100.35 100.54 3.9084 -0.0021822 -0.00032959 NaN 0.094841 39 26 3 NaN NaN NaN NaN 0 NaN NaN 0 221420 7255 2397 4465 4470 0.1437870756551547 FERRRELRRQK 11 Unmodified _FERRRELRRQK_ 0 0 0 ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000475772.5_1_7:134552484-134552556:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF ENST00000482470.5_1_7:134552484-134644871:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.44164 0.000232 0.12582 6.6097E-05 0.56747 0.0002981 525.64419382093 96.399 0.035156 100.31 100.3 100.33 3.9084 -0.060615 -1.4156E-05 NaN 0.094841 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 102950 7256 2397 4465 4470 0.1437870756551547 FERYKERL 8 Unmodified _FERYKERL_ 0 0 0 REV__L1MC1_dup1304|chr2:54001834-54002342:-|1.871164615685307|0.0305626652674478|5.94|151.0|21|1|anti-sense REV__L1MC1_dup1304|chr2:54001834-54002342:-|1.871164615685307|0.0305626652674478|5.94|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8116455078125 2 570.811648 1139.60874 0.41508 0.00023693 -0.036813 -2.1013E-05 0.37826 0.00021592 570.8115362692107 42.903 0.69392 46.661 46.276 46.97 3.7579 115 57 3 0 0 0 0.82752 1 7928 7928 3.9444 0 1 312340 + 7257 26527 4466 4471 9094 9094 0.04452236600195647 FESKLNSNIL 10 Unmodified _FESKLNSNIL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|96|1|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|96|1|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|96|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.8170776367188 2 582.816596 1163.61864 0.48289 0.00028143 0.063372 3.6935E-05 0.54626 0.00031837 582.8166383921211 68.973 0.48174 72.495 72.347 72.829 3.5216 58 35 3 0 0 0 0.54148 1 16008 16008 6.6304 0 1 279040 7258 8200 4467 4472 9095 9095 0.043373798149104914 FESVFPLSH 9 Unmodified _FESVFPLSH_ 0 0 0 nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669|TRIP12 nc|ENSG00000153827|Q14669|TRIP12 MSMS UPN46_class_I_Rep_3 1 531.7662353515625 2 531.766374 1061.5182 NaN NaN NaN NaN NaN NaN NaN 65.473 1 65.473 64.973 65.973 0 0 0 0 0.37476 1 14799 14799 6.7232 2.7788 1 7259 3651 4468 4473 9096 9096 -0.010102324480840252 FETEPFLYT 9 Unmodified _FETEPFLYT_ 0 0 0 REV__nc|ENSG00000135111|O15119-3|TBX3 REV__nc|ENSG00000135111|O15119-3|TBX3 MULTI-SECPEP UPN47_class_I_Rep_2 3 573.2786865234375 2 573.771322 1145.52809 0.43576 0.00025003 -0.67798 -0.000389 -0.24222 -0.00013898 573.7709144961692 73.064 0.23956 76.361 76.192 76.432 3.2971 27 18 2 0 0 0 0.12321 1 17922 17922 3.9444 1.6417 1 49523 + 7260 19124 4469 4474 9097 9097 -0.038850892333812226 FETEPFLYT 9 Unmodified _FETEPFLYT_ 0 0 0 REV__nc|ENSG00000135111|O15119-3|TBX3 REV__nc|ENSG00000135111|O15119-3|TBX3 MULTI-MSMS UPN47_class_I_Rep_3 4 574.2736206054688 2 573.771322 1145.52809 0.4537 0.00026032 -0.65293 -0.00037463 -0.19923 -0.00011431 573.7707410545698 73.109 0.26525 76.336 76.181 76.447 3.2271 32 21 2 0 0 0 0.23293 1 18031 18031 18.146 6.5061 1 68887 + 7261 19124 4469 4474 9098 9098 -0.038850892333812226 FETVHRWRR 9 Unmodified _FETVHRWRR_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MSMS UPN48_class_I_Rep_1 5 643.8472900390625 2 643.846887 1285.67922 NaN NaN NaN NaN NaN NaN NaN 41.178 1 44.684 44.184 45.184 3.506 0 0 0 0.4007 1 7475 7475 0.52476 0 1 7262 1453 4470 4475 9099 9099 0.047809547084852966 FEVHYIVKY 9 Unmodified _FEVHYIVKY_ 0 0 0 L1ME2z_dup1100|chr3:11355289-11356305:+|4.037314283542957|0.2941388020931464|3.78|151.0|68|3|anti-sense L1ME2z_dup1100|chr3:11355289-11356305:+|4.037314283542957|0.2941388020931464|3.78|151.0|68|3|anti-sense L1ME2z_dup1100|chr3:11355289-11356305:+|4.037314283542957|0.2941388020931464|3.78|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_1 5 599.3182373046875 2 599.318774 1196.623 NaN NaN NaN NaN NaN NaN NaN 35.171 1 38.685 38.185 39.185 3.5144 0 0 0 0.39518 1 5720 5720 1.8442 0 1 7263 12541 4471 4476 9100 9100 0.032548890284715526 FEVLGWDY 8 Unmodified _FEVLGWDY_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MSMS UPN46_class_I_Rep_3 1 514.3587646484375 2 514.739825 1027.4651 NaN NaN NaN NaN NaN NaN NaN 42.102 1 42.102 41.602 42.602 0 0 0 0 0.388 1 8310 8310 12.532 1.7076 1 7264 840 4472 4477 9101 9101 -0.047536102307503825 FEVNYWISR 9 Unmodified _FEVNYWISR_ 0 0 0 REV__L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|326|2|anti-sense REV__L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|326|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 607.303955078125 2 607.303655 1212.59276 0.47062 0.00028581 -0.11286 -6.8538E-05 0.35777 0.00021727 607.3034542292914 57.061 0.69264 60.604 60.345 61.037 3.5427 138 69 3 0 0 0 0.37599 1 12273 12273 9.3831 0 1 235470 + 7265 29155 4473 4478 9102 9102 -0.005034696367374636 FEVYVHASY 9 Unmodified _FEVYVHASY_ 0 0 0 REV__ENSG00000155189.12,AGPAT5,chr8,+,I9.1,6747829,6755050|28|10.87|4|intron REV__ENSG00000155189.12,AGPAT5,chr8,+,I9.1,6747829,6755050|28|10.87|4|intron MULTI-MSMS UPN47_class_I_Rep_2 3 557.763427734375 2 557.763832 1113.51311 0.046571 2.5976E-05 -0.65613 -0.00036596 -0.60956 -0.00033999 557.7633452226376 28.945 0.42433 32.438 32.311 32.735 3.4923 54 33 2 0 0 0 0.42249 1 4556 4556 6.7232 1.4263 1 58513 + 7266 19760 4474 4479 9103 9103 -0.03910536310718271 FEWGFCAVLF 10 Unmodified _FEWGFCAVLF_ 0 0 0 L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|124|1|anti-sense L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|124|1|anti-sense L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|124|1|anti-sense MSMS UPN47_class_I_Rep_1 2 406.8580017089844 3 406.859927 1217.55795 NaN NaN NaN NaN NaN NaN NaN 13.063 1 16.52 16.02 17.02 3.457 0 0 0 0.53105 1 232 232 0.77653 0.078866 1 7267 13591 4475 4480 9104 9104 -0.0421242876902852 FEWYLGNIY 9 Unmodified _FEWYLGNIY_ 0 0 0 ENST00000426714.1_1_1:66041898-66042324:-|nuORF ENST00000426714.1_1_1:66041898-66042324:-|nuORF ENST00000426714.1_1_1:66041898-66042324:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 602.7875366210938 2 602.787307 1203.56006 0.17115 0.00010316 -0.47265 -0.00028491 -0.30151 -0.00018175 602.7869735626479 43.996 0.3173 47.238 47.02 47.338 3.2419 18 15 2 0 0 0 0.47493 1 9209 9209 3.2813 0.78282 1 45859 7268 6707 4476 4481 9105 9105 -0.033576767595604906 FEWYYVFL 8 Unmodified _FEWYYVFL_ 0 0 0 L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|40|2|anti-sense L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|40|2|anti-sense L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 583.780517578125 2 583.781493 1165.54843 NaN NaN NaN NaN NaN NaN NaN 65.525 1 68.781 68.281 69.281 3.2556 0 0 0 0.39819 1 15683 15683 8.5933 1.304 1 7269 8935 4477 4482 9106 9106 -0.0277187378292183 FEWYYVFL 8 Unmodified _FEWYYVFL_ 0 0 0 L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|40|2|anti-sense L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|40|2|anti-sense L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 583.7822265625 2 583.781493 1165.54843 NaN NaN NaN NaN NaN NaN NaN 65.563 1 68.819 68.319 69.319 3.2556 0 0 0 0.39819 1 15695 15695 8.5933 0.68312 1 7270 8935 4477 4482 9107 9107 -0.0277187378292183 FEYIRSETY 9 Unmodified _FEYIRSETY_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-MSMS UPN47_class_I_Rep_1 2 604.78759765625 2 604.285128 1206.5557 0.13078 7.9027E-05 -0.18983 -0.00011471 -0.059054 -3.5686E-05 604.2849140643432 45.424 0.65848 49.124 48.753 49.412 3.6999 61 35 2 0 0 0 0.10956 6 9493 9463;9493;9504;9543;9593;9601 32.037 12.207 1 58502 7271 3512 4478 4483 9108;9109;9110;9111;9112;9113 9109 -0.039311859731242293 FEYIRSETY 9 Unmodified _FEYIRSETY_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-MSMS UPN47_class_I_Rep_2 3 604.2844848632812 2 604.285128 1206.5557 0.23981 0.00014491 0.23012 0.00013906 0.46992 0.00028397 604.2852062626391 45.64 0.65481 48.993 48.78 49.435 3.3535 65 40 2 0 0 0 0.14474 5 9696 9601;9611;9659;9696;9718 26.021 12.978 1 84147 7272 3512 4478 4483 9114;9115;9116;9117;9118 9117 -0.039311859731242293 FEYIRSETY 9 Unmodified _FEYIRSETY_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-MSMS UPN47_class_I_Rep_3 4 604.285400390625 2 604.285128 1206.5557 0.26932 0.00016275 -0.046539 -2.8123E-05 0.22278 0.00013462 604.2848906255022 45.869 0.6714 49.113 48.781 49.453 3.2441 56 37 2 0 0 0 0.086321 5 9745 9702;9709;9731;9745;9798 37.075 14.338 1 89898 7273 3512 4478 4483 9119;9120;9121;9122;9123 9122 -0.039311859731242293 FEYRVGMEDI 10 Unmodified _FEYRVGMEDI_ 0 0 0 REV__ENSG00000144962|ENST00000351008|SPATA16 REV__ENSG00000144962|ENST00000351008|SPATA16 MSMS UPN47_class_I_Rep_1 2 629.7918090820312 2 629.792263 1257.56997 NaN NaN NaN NaN NaN NaN NaN 41.312 1 44.984 44.484 45.484 3.6719 0 0 0 0.53105 1 8282 8282 1.3295 0.63916 1 + 7274 19500 4479 4484 9124 9124 -0.04850856816483429 FFAVVPPKK 9 Unmodified _FFAVVPPKK_ 0 0 0 Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|7|2|sense Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|7|2|sense Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 516.8137817382812 2 516.81567 1031.61679 NaN NaN NaN NaN NaN NaN NaN 31.197 1 34.496 33.996 34.996 3.2991 0 0 0 0.39326 1 5284 5284 2.3027 1.6124 1 7275 448 4480 4485 9125 9125 0.10224415587617841 FFAWHHLH 8 Unmodified _FFAWHHLH_ 0 0 0 REV__ENST00000301761.6_1_11:61214076-61214163:+|nuORF REV__ENST00000301761.6_1_11:61214076-61214163:+|nuORF MSMS UPN46_class_I_Rep_3 1 547.7693481445312 2 547.769586 1093.52462 NaN NaN NaN NaN NaN NaN NaN 31.35 1 31.35 30.85 31.85 0 0 0 0 0.40738 1 5226 5226 0.79363 0 1 + 7276 21674 4481 4486 9126 9126 -0.018402497060606038 FFCAQCGAF 9 Unmodified _FFCAQCGAF_ 0 0 0 nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-4|PXN nc|ENSG00000089159|P49023-4|PXN MULTI-MSMS UPN48_class_I_Rep_1 5 497.201171875 2 497.201499 992.388444 0.23673 0.0001177 -0.65832 -0.00032732 -0.42158 -0.00020961 497.201129648627 32.936 0.69371 36.463 36.225 36.919 3.5266 94 76 2 0 0 0 0.40174 1 5079 5079 7.9102 7.9102 1 93661 7277 1332 4482 4487 9127 9127 -0.10805448323242217 FFCAQCGAF 9 Unmodified _FFCAQCGAF_ 0 0 0 nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-4|PXN nc|ENSG00000089159|P49023-4|PXN MULTI-MSMS UPN48_class_I_Rep_3 7 497.2012023925781 2 497.201499 992.388444 0.15507 7.71E-05 -0.6536 -0.00032497 -0.49853 -0.00024787 497.20113058701423 32.781 0.5645 36.471 36.183 36.748 3.6896 102 67 2 0 0 0 0.40174 2 4980 4980;5011 7.9102 7.9102 1 106620 7278 1332 4482 4487 9128;9129 9128 -0.10805448323242217 FFCHLLNCFI 10 Unmodified _FFCHLLNCFI_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|225|1|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|225|1|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|225|1|anti-sense MSMS UPN47_class_I_Rep_1 2 628.799560546875 2 628.80138 1255.58821 NaN NaN NaN NaN NaN NaN NaN 35.466 1 39.142 38.642 39.642 3.6762 0 0 0 0.53105 1 6507 6507 1.8442 0.19162 1 7279 14550 4483 4488 9130 9130 -0.02936393375489388 FFCICCIH 8 Unmodified _FFCICCIH_ 0 0 0 REV__L1MC_dup1974|chr4:87355209-87355589:+|1.4308092726742696|0.0113863742808508|6.97|151.0|23|3|anti-sense REV__L1MC_dup1974|chr4:87355209-87355589:+|1.4308092726742696|0.0113863742808508|6.97|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 493.2090148925781 2 493.208269 984.401986 NaN NaN NaN NaN NaN NaN NaN 118.11 1 121.71 121.21 122.21 3.6036 0 0 0 0.40738 1 29300 29300 0.79363 0 1 + 7280 26459 4484 4489 9131 9131 -0.09083913815652522 FFCILYQYL 9 Unmodified _FFCILYQYL_ 0 0 0 REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|66|3|anti-sense REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|66|3|anti-sense MSMS UPN48_class_I_Rep_3 7 604.8634643554688 2 605.304278 1208.594 NaN NaN NaN NaN NaN NaN NaN 46.018 1 49.655 49.155 50.155 3.6369 0 0 0 0.39428 1 8876 8876 2.0598 0.21551 1 + 7281 26048 4485 4490 9132 9132 -0.0019497159216825821 FFCYLCFWC 9 Unmodified _FFCYLCFWC_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense;L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|101|3|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_3 4 616.2418212890625 2 616.242309 1230.47007 NaN NaN NaN NaN NaN NaN NaN 13.445 1 16.819 16.319 17.319 3.3734 0 0 0 0.40038 1 319 319 0.6015 0 1 7282 10719 4486 4491 9133 9133 -0.13595088955662504 FFDEWMFG 8 Unmodified _FFDEWMFG_ 0 0 0 ENSG00000135577|ENST00000258042|NMBR ENSG00000135577|ENST00000258042|NMBR ENSG00000135577|ENST00000258042|NMBR MULTI-SECPEP UPN47_class_I_Rep_2 3 540.2216796875 2 539.720578 1077.4266 -0.0010263 -5.5391E-07 -2.3127 -0.0012482 -2.3137 -0.0012488 539.7190708741182 35.213 0.24747 38.638 38.494 38.741 3.4253 20 15 2 0 0 0 0.72333 1 6489 6489 0.79363 0.10326 1 54166 7283 2918 4487 4492 9134 9134 -0.10901239136933327 FFDIKTYQI 9 Unmodified _FFDIKTYQI_ 0 0 0 REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|29|2|sense REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|29|2|sense MSMS UPN48_class_I_Rep_3 7 587.7943725585938 2 587.810782 1173.60701 NaN NaN NaN NaN NaN NaN NaN 57.182 1 60.725 60.225 61.225 3.5427 0 0 0 0.32573 1 12278 12278 9.3831 1.473 1 + 7284 27878 4488 4493 9135 9135 0.027151827915531612 FFDLHRGHT 9 Unmodified _FFDLHRGHT_ 0 0 0 REV__L1MD2_dup6915|chrX:154693287-154693700:+|1.5645272123503609|0.0230871582807687|6.08|151.0|28|2|anti-sense REV__L1MD2_dup6915|chrX:154693287-154693700:+|1.5645272123503609|0.0230871582807687|6.08|151.0|28|2|anti-sense MSMS UPN47_class_I_Rep_3 4 565.2911376953125 2 565.280515 1128.54648 NaN NaN NaN NaN NaN NaN NaN 32.258 1 35.545 35.045 36.045 3.2867 0 0 0 0.38639 1 5605 5605 3.9444 0.3479 1 + 7285 27425 4489 4494 9136 9136 -0.01265489748152504 FFDTVSHSVT 10 Unmodified _FFDTVSHSVT_ 0 0 0 AluJb_dup88516|chr13:28028770-28029081:-|1.1305944953027305|0.0071816638126053|7.3|150.0|15|1|anti-sense AluJb_dup88516|chr13:28028770-28029081:-|1.1305944953027305|0.0071816638126053|7.3|150.0|15|1|anti-sense AluJb_dup88516|chr13:28028770-28029081:-|1.1305944953027305|0.0071816638126053|7.3|150.0|15|1|anti-sense MSMS UPN47_class_I_Rep_2 3 570.2705078125 2 570.272021 1138.52949 NaN NaN NaN NaN NaN NaN NaN 50.943 1 54.282 53.782 54.782 3.3386 0 0 0 0.53105 1 11242 11242 3.2813 0.39209 1 7286 79 4490 4495 9137 9137 -0.03423455144616128 FFEECHWCF 9 Unmodified _FFEECHWCF_ 0 0 0 L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|218|3|anti-sense L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|218|3|anti-sense L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|218|3|anti-sense MSMS UPN47_class_I_Rep_3 4 624.2348022460938 2 624.23607 1246.45759 NaN NaN NaN NaN NaN NaN NaN 111.73 1 115.25 114.75 115.75 3.5207 0 0 0 0.40038 1 27437 27437 0.6015 0 1 7287 9902 4491 4496 9138 9138 -0.15578409094337076 FFEEFPYY 8 Unmodified _FFEEFPYY_ 0 0 0 L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|95|3|anti-sense L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|95|3|anti-sense L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|95|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.7713623046875 2 571.247483 1140.48041 0.23661 0.00013516 1.0694 0.0006109 1.306 0.00074606 571.7496535618704 50.65 0.14351 54.279 54.233 54.376 3.6285 7 5 2 0 0 0 0.72333 1 11117 11117 2.8892 0 1 25093 7288 9811 4492 4497 9139 9139 -0.08420743433566713 FFEFSQDSY 9 Unmodified _FFEFSQDSY_ 0 0 0 L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|217|3|anti-sense L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|217|3|anti-sense L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|217|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 585.2424926757812 2 585.242929 1168.47131 0.39474 0.00023102 -0.62081 -0.00036333 -0.22607 -0.00013231 585.2424025652734 68.71 0.73482 71.979 71.623 72.357 3.2696 101 63 2 0 0 0 0.43153 1 16689 16689 6.2058 0 1 103700 7289 8544 4493 4498 9140 9140 -0.10619136789887307 FFEPYLTPY 9 Unmodified _FFEPYLTPY_ 0 0 0 L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|70|1|sense L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|70|1|sense L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|70|1|sense MSMS UPN48_class_I_Rep_3 7 588.7821655273438 2 588.784233 1175.55391 NaN NaN NaN NaN NaN NaN NaN 39.593 1 43.249 42.749 43.749 3.6557 0 0 0 0.38639 1 6944 6944 3.9444 0.3479 1 7290 10873 4494 4499 9141 9141 -0.026841949910931362 FFETLLLL 8 Unmodified _FFETLLLL_ 0 0 0 ENSG00000213020.10,ZNF611,chr19,-,I7.1,52716234,52720908|59|6.21|1|intron REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|436|3|anti-sense REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|436|3|anti-sense MSMS UPN47_class_I_Rep_1 2 498.29376220703125 2 498.294236 994.57392 NaN NaN NaN NaN NaN NaN NaN 21.735 1 25.41 24.91 25.91 3.6749 0 0 0 0.40625 1 2407 2407 2.3027 1.5091 1 7291 5578 4495 4500 9142 9142 0.0764160073953235 FFETTEKE 8 Unmodified _FFETTEKE_ 0 0 0 L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|21|1|sense L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|21|1|sense L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 515.737548828125 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 116.99 1 116.99 116.49 117.49 0 0 0 0 0.40625 1 28984 28984 2.3027 0.24298 1 7292 13495 4496 4501 9143 9143 -0.048062353015666304 FFEYDIFK 8 Unmodified _FFEYDIFK_ 0 0 0 REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|224|2|anti-sense REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|224|2|anti-sense MSMS UPN47_class_I_Rep_2 3 554.7897338867188 2 554.771126 1107.5277 NaN NaN NaN NaN NaN NaN NaN 52.076 1 55.409 54.909 55.909 3.3332 0 0 0 0.39996 1 11590 11590 7.9102 1.5561 1 + 7293 27818 4497 4502 9144 9144 -0.021764641625850345 FFEYDIFK 8 Unmodified _FFEYDIFK_ 0 0 0 REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|224|2|anti-sense REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|224|2|anti-sense MSMS UPN47_class_I_Rep_2 3 554.7894897460938 2 554.771126 1107.5277 NaN NaN NaN NaN NaN NaN NaN 52.096 1 55.429 54.929 55.929 3.3332 0 0 0 0.39996 1 11596 11596 7.9102 1.5561 1 + 7294 27818 4497 4502 9145 9145 -0.021764641625850345 FFFCCFCFW 9 Unmodified _FFFCCFCFW_ 0 0 0 L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|77|1|anti-sense;L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|73|2|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|77|1|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|77|1|anti-sense MSMS UPN48_class_I_Rep_1 5 625.2366333007812 2 625.237027 1248.4595 NaN NaN NaN NaN NaN NaN NaN 17.72 1 21.246 20.746 21.746 3.5261 0 0 0 0.40038 1 1073 1073 0.6015 0 1 7295 10599 4498 4503 9146 9146 -0.15479071610093342 FFFCCFCFW 9 Unmodified _FFFCCFCFW_ 0 0 0 L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|77|1|anti-sense;L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|73|2|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|77|1|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|77|1|anti-sense MSMS UPN48_class_I_Rep_2 6 625.2368774414062 2 625.237027 1248.4595 NaN NaN NaN NaN NaN NaN NaN 50.173 1 53.868 53.368 54.368 3.6946 0 0 0 0.40038 1 10216 10216 0.6015 0 1 7296 10599 4498 4503 9147 9147 -0.15479071610093342 FFFCEECHW 9 Unmodified _FFFCEECHW_ 0 0 0 L1MA2_dup5411|chr11:14496335-14498316:+|3.0288499511099607|0.3491566207813676|3.12|151.0|101|2|anti-sense L1MA2_dup5411|chr11:14496335-14498316:+|3.0288499511099607|0.3491566207813676|3.12|151.0|101|2|anti-sense L1MA2_dup5411|chr11:14496335-14498316:+|3.0288499511099607|0.3491566207813676|3.12|151.0|101|2|anti-sense MSMS UPN47_class_I_Rep_1 2 624.2369384765625 2 624.23607 1246.45759 NaN NaN NaN NaN NaN NaN NaN 24.972 1 28.721 28.221 29.221 3.7495 0 0 0 0.40038 1 3353 3353 0.6015 0 1 7297 9393 4499 4504 9148 9148 -0.15578409094337076 FFFCQIFH 8 Unmodified _FFFCQIFH_ 0 0 0 L1MB8_dup11603|chr12:26946643-26947421:-|1.0715546582361914|0.0415254841706059|4.69|151.0|42|1|anti-sense L1MB8_dup11603|chr12:26946643-26947421:-|1.0715546582361914|0.0415254841706059|4.69|151.0|42|1|anti-sense L1MB8_dup11603|chr12:26946643-26947421:-|1.0715546582361914|0.0415254841706059|4.69|151.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.7548217773438 2 544.754756 1087.49496 NaN NaN NaN NaN NaN NaN NaN 25.68 1 29.247 28.747 29.747 3.5667 0 0 0 0.40738 1 3030 3030 0.79363 0 1 7298 10915 4500 4505 9149 9149 -0.045289497664043665 FFFCYLCF 8 Unmodified _FFFCYLCF_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense;L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|101|3|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_2 3 545.232666015625 2 545.232267 1088.44998 NaN NaN NaN NaN NaN NaN NaN 118.32 1 121.81 121.31 122.31 3.4822 0 0 0 0.40738 1 28948 28948 0.79363 0 1 7299 10719 4501 4506 9150 9150 -0.09070516623955882 FFFDYLYV 8 Unmodified _FFFDYLYV_ 0 0 0 REV__L1MC5_dup4335|chr5:50413083-50413570:+|4.516863372321206|0.342738171413019|3.72|151.0|38|3|anti-sense REV__L1MC5_dup4335|chr5:50413083-50413570:+|4.516863372321206|0.342738171413019|3.72|151.0|38|3|anti-sense MSMS UPN48_class_I_Rep_2 6 557.3511352539062 2 557.268219 1112.52188 NaN NaN NaN NaN NaN NaN NaN 78.372 1 81.994 81.494 82.494 3.6222 0 0 0 0.40604 1 18591 18591 2.5775 0 1 + 7300 27080 4502 4507 9151 9151 -0.02987562674252331 FFFDYLYV 8 Unmodified _FFFDYLYV_ 0 0 0 REV__L1MC5_dup4335|chr5:50413083-50413570:+|4.516863372321206|0.342738171413019|3.72|151.0|38|3|anti-sense REV__L1MC5_dup4335|chr5:50413083-50413570:+|4.516863372321206|0.342738171413019|3.72|151.0|38|3|anti-sense MSMS UPN48_class_I_Rep_2 6 557.2703247070312 2 557.268219 1112.52188 NaN NaN NaN NaN NaN NaN NaN 112.53 1 116.2 115.7 116.7 3.6648 0 0 0 0.40604 1 26816 26816 2.5775 0.51773 1 + 7301 27080 4502 4507 9152 9152 -0.02987562674252331 FFFEIGSIML 10 Unmodified _FFFEIGSIML_ 0 0 0 REV__L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|69|2|anti-sense REV__L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|69|2|anti-sense MSMS UPN48_class_I_Rep_1 5 602.3092651367188 2 602.309561 1202.60457 NaN NaN NaN NaN NaN NaN NaN 70.851 1 74.314 73.814 74.814 3.4636 0 0 0 0.53105 1 16532 16532 3.2813 0 1 + 7302 25415 4503 4508 9153 9153 0.01137011062246529 FFFFETRFC 9 Unmodified _FFFFETRFC_ 0 0 0 AluJo_dup38107|chrX:2698924-2699111:-|1.2943803209871627|0.0053447088866935|7.92|151.0|10|1|anti-sense AluJo_dup38107|chrX:2698924-2699111:-|1.2943803209871627|0.0053447088866935|7.92|151.0|10|1|anti-sense AluJo_dup38107|chrX:2698924-2699111:-|1.2943803209871627|0.0053447088866935|7.92|151.0|10|1|anti-sense MSMS UPN48_class_I_Rep_1 5 622.2813720703125 2 622.283877 1242.5532 NaN NaN NaN NaN NaN NaN NaN 34.613 1 38.128 37.628 38.628 3.5144 0 0 0 0.39428 1 5559 5559 2.0598 0.21551 1 7303 107 4504 4509 9154 9154 -0.05837312911785375 FFFFFAFF 8 Unmodified _FFFFFAFF_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_1 2 560.2715454101562 2 560.270564 1118.52658 NaN NaN NaN NaN NaN NaN NaN 65.807 1 69.165 68.665 69.665 3.3576 0 0 0 0.4032 1 15721 15721 6.3541 0 1 + 7304 24164 4505 4510 9155 9155 -0.02794633740813879 FFFFFAFF 8 Unmodified _FFFFFAFF_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_1 2 560.2714233398438 2 560.270564 1118.52658 NaN NaN NaN NaN NaN NaN NaN 66.092 1 69.449 68.949 69.949 3.3576 0 0 0 0.4032 1 15809 15809 6.3541 0 1 + 7305 24164 4505 4510 9156 9156 -0.02794633740813879 FFFFFAFF 8 Unmodified _FFFFFAFF_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.2710571289062 2 560.270564 1118.52658 0.37133 0.00020804 1.1432 0.00064049 1.5145 0.00084854 560.2710674177554 66.119 0.59406 69.377 69.19 69.785 3.2588 47 35 2 0 0 0 0.82752 3 15839 15839;15847;15884 11.114 0 1 56449 + 7306 24164 4505 4510 9157;9158;9159 9157 -0.02794633740813879 FFFFFAFF 8 Unmodified _FFFFFAFF_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 560.7740478515625 2 560.270564 1118.52658 0.37133 0.00020804 1.1432 0.00064049 1.5145 0.00084854 560.2710674177554 66.119 0.59406 69.377 69.19 69.785 3.2588 47 35 2 0 0 0 0.72333 1 15847 15847 11.114 0 1 56449 + 7307 24164 4505 4510 9160 9160 -0.02794633740813879 FFFFFAFF 8 Unmodified _FFFFFAFF_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_3 4 560.2705688476562 2 560.270564 1118.52658 NaN NaN NaN NaN NaN NaN NaN 66.387 1 69.573 69.073 70.073 3.1853 0 0 0 0.4032 1 16008 16008 6.3541 0 1 + 7308 24164 4505 4510 9161 9161 -0.02794633740813879 FFFFFAFF 8 Unmodified _FFFFFAFF_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|72|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.270564 1118.52658 0.51921 0.0002909 1.2561 0.00070376 1.7753 0.00099466 560.2714742357157 65.991 0.11765 69.478 69.383 69.5 3.4866 0.050076 0.00011907 NaN 11.114 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 64609 + 7309 24164 4505 4510 -0.02794633740813879 FFFFFALI 8 Unmodified _FFFFFALI_ 0 0 0 REV__L1MEc_dup6463|chr5:143285421-143286295:+|3.468384020453642|0.288626341658795|3.59|151.0|35|1|anti-sense REV__L1MEc_dup6463|chr5:143285421-143286295:+|3.468384020453642|0.288626341658795|3.59|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 526.2881469726562 2 526.286214 1050.55788 NaN NaN NaN NaN NaN NaN NaN 62.834 1 66.297 65.797 66.797 3.4625 0 0 0 0.40581 1 14095 14095 2.8892 0 1 + 7310 28467 4506 4511 9162 9162 0.034619392932881965 FFFFFALI 8 Unmodified _FFFFFALI_ 0 0 0 REV__L1MEc_dup6463|chr5:143285421-143286295:+|3.468384020453642|0.288626341658795|3.59|151.0|35|1|anti-sense REV__L1MEc_dup6463|chr5:143285421-143286295:+|3.468384020453642|0.288626341658795|3.59|151.0|35|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 526.7744750976562 2 526.286214 1050.55788 0.44628 0.00023487 1.1331 0.00059634 1.5794 0.00083121 526.2868375111236 62.813 0.64199 66.287 65.998 66.64 3.4738 55 45 2 0 0 0 0.82752 1 14137 14137 6.3541 0 1 224350 + 7311 28467 4506 4511 9163 9163 0.034619392932881965 FFFFFFCL 8 Unmodified _FFFFFFCL_ 0 0 0 HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|103|3|anti-sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|206|2|anti-sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|16|1|anti-sense;ENST00000557320.5_1_14:96999700-97000015:+|nuORF;ENSG00000127922.9,SEM1,chr7,-,I2.1,96706396,96708147|32|11.57|1|intron;L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|97|2|anti-sense;L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|262|2|anti-sense;AluJb_dup98011|chr15:72332332-72332632:-|1.2072361338045117|0.1071251797872336|3.49|151.0|15|2|anti-sense;L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|213|1|anti-sense;L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|17|1|sense;HAL1_dup11251|chr8:25218864-25220042:-|2.0141950745151465|0.0170253830915309|6.89|151.0|49|1|anti-sense;L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|173|2|anti-sense;L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|139|1|anti-sense;MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|48|2|sense;HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|280|3|anti-sense;ENST00000427704.6_1_6:144150070-144150364:+|nuORF;L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|214|3|anti-sense;L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|186|1|anti-sense;HAL1_dup11591|chr8:61532942-61533675:-|1.3880732232243214|0.024514944586484|5.82|150.0|35|2|anti-sense;ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|45|2|anti-sense;L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|352|3|anti-sense;L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|37|1|anti-sense;MER77B_dup665|chr9:112305159-112305659:+|1.057086177188785|0.0049756187048957|7.73|151.0|2|1|sense;Tigger6a_dup529|chr10:26574746-26575179:+|1.1400052246654542|0.017528881000005|6.02|151.0|22|2|anti-sense;MER41-int_dup542|chr6:15556909-15558273:+|1.399843637465695|0.0380021109818504|5.2|151.0|39|3|sense;L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|140|3|anti-sense;L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|293|3|anti-sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|161|3|anti-sense;Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|16|2|sense;L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|229|3|anti-sense;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENST00000533331.5_1_11:14535061-14541920:-|nuORF HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|103|3|anti-sense;ENST00000533331.5_1_11:14535061-14541920:-|nuORF HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|103|3|anti-sense MSMS UPN47_class_I_Rep_2 3 559.2655639648438 2 559.264425 1116.5143 NaN NaN NaN NaN NaN NaN NaN 74.605 1 77.918 77.418 78.418 3.3127 0 0 0 0.40738 1 18390 18390 0.79363 0 1 7312 95;7309 4507 4512 9164 9164 -0.03929993475503579 FFFFFFFCWWR 11 Unmodified _FFFFFFFCWWR_ 0 0 0 Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|80|1|anti-sense Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|80|1|anti-sense Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|80|1|anti-sense MSMS UPN46_class_I_Rep_3 1 560.8467407226562 3 560.593404 1678.75838 NaN NaN NaN NaN NaN NaN NaN 54.136 1 54.136 53.636 54.636 0 0 0 0 0.38417 1 11700 11700 0.08335 0.08335 1 7313 33173 4508 4513 9165 9165 -0.053845343815510205 FFFFFFFF 8 Unmodified _FFFFFFFF_ 0 0 0 ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron;AluSc_dup7239|chr3:172181550-172181851:+|1.2791119483893678|0.0487156934426903|4.71|151.0|14|1|anti-sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|17|2|anti-sense;AluSx1_dup44191|chr7:77058499-77058796:-|2.4242579282989007|0.1447624007977476|4.07|151.0|14|1|anti-sense;L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|178|1|anti-sense;AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|11|1|anti-sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|18|2|anti-sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|16|2|anti-sense;AluSz_dup102489|chr22:41675417-41675721:-|1.1319236716084653|0.4218336272865527|1.42|151.0|15|1|anti-sense;chr16:74336706-74337109|41|11.93|0.29|5.34|-|0|TE_info:AluJb,AluJb_dup104040,Alu,SINE,donor,+,74337109,74337244|PDPR2P,None|1;ENST00000368020.5_1_1:161009058-161009226:-|nuORF;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|226|1|anti-sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|247|3|anti-sense;AluY_dup68154|chr11:117075537-117075840:-|1.1220913504062984|0.0617045449400959|4.18|151.0|16|2|anti-sense;L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|79|1|anti-sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|231|2|anti-sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|34|1|anti-sense;AluSq_dup2599|chr2:178435234-178435407:+|1.2767636344228035|0.2830895642514354|2.17|151.0|7|1|anti-sense;AluSx_dup80828|chr13:50038987-50039262:-|1.0067487401797952|0.0722656185577349|3.8|151.0|15|2|anti-sense;AluSq2_dup31070|chrX:1521909-1522254:-|1.8108009798113425|0.0149214044047803|6.92|151.0|14|2|anti-sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|22|3|anti-sense;chr16:74336706-74337093|50|11.8|0.28|5.42|-|2|TE_info:AluJb,AluJb_dup104040,Alu,SINE,donor,+,74337093,74337244|PDPR2P,None|1;AluJb_dup40245|chr6:2294589-2294909:+|1.052068277035559|0.0112279956121626|6.55|151.0|13|1|anti-sense;L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|106|2|anti-sense;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|168|3|anti-sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|15|1|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|456|3|anti-sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|8|1|sense;AluSq2_dup31069|chrX:1499138-1499462:-|1.5395508035514358|0.0062414000396377|7.95|151.0|12|1|anti-sense;L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|336|2|anti-sense;ENST00000241416.11_1_2:148602472-148602628:+|nuORF;ENST00000306336.5_2_2:85835764-85835920:-|nuORF;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|13|2|anti-sense;L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|231|1|anti-sense;ENST00000555275.5_1_14:58740703-58758361:-|nuORF;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|10|1|anti-sense;chr11:130261929-130288772|56|11.3|0.61|4.22|-|1|TE_info:AluSx,AluSx_dup73628,Alu,SINE,donor,+,130288772,130288922|ZBTB44,None|1;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|27|2|sense;AluSc8_dup13604|chr11:47371079-47371384:+|1.6299973055057877|0.0245553822374319|6.05|151.0|19|2|anti-sense;AluY_dup69270|chr12:11733127-11733432:+|1.4603771570045678|0.0127771773957718|6.84|151.0|17|2|anti-sense;AluYk4_dup476|chr8:37888791-37889095:-|1.613557952970998|0.031701761063595|5.67|151.0|19|2|anti-sense;AluY_dup53652|chr9:120790197-120790507:+|1.1662667044716504|0.2495350418996769|2.22|151.0|12|1|anti-sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|14|1|anti-sense;AluY_dup67127|chr11:78405092-78405398:-|1.1186909011275556|0.004439834074792|7.98|151.0|16|2|anti-sense;AluSc8_dup17695|chr16:30264559-30264866:-|1.8841084479571768|0.0350316887477073|5.75|141.0|14|1|anti-sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|21|3|anti-sense;AluJb_dup36092|chr5:70989821-70990010:-|2.211852482793979|0.0693417533637569|5.0|151.0|8|1|anti-sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|23|3|anti-sense;AluSx1_dup104276|chr19:8466546-8466852:+|1.2264079480065166|0.1297349013206218|3.24|151.0|14|1|anti-sense;AluSc8_dup18585|chr17:29741925-29742231:-|2.269287239570923|0.1437505543860524|3.98|151.0|13|2|anti-sense;AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|12|1|anti-sense;AluY_dup76878|chr14:21250980-21251284:+|1.1577610512067646|0.016774006011083|6.11|151.0|13|1|anti-sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|22|3|anti-sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|17|2|anti-sense;AluJb_dup101209|chr16:21868299-21868609:+|1.8797539312591889|0.200150386994308|3.23|151.0|17|2|anti-sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|12|1|anti-sense;ENSG00000113300.13,CNOT6,chr5,+,I8.1,180565978,180567087|23|9.44|1|intron;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|20|3|anti-sense;L1ME3A_dup3284|chr3:125256793-125257269:-|1.0369385696176323|0.0240081458498587|5.43|151.0|25|2|anti-sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|20|3|anti-sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|73|1|anti-sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|11|1|anti-sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|17|2|anti-sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|110|3|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|87|2|anti-sense;L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|293|3|anti-sense;AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|18|1|anti-sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|13|1|anti-sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|14|1|anti-sense;ENST00000460337.5_1_1:213180329-213180506:-|nuORF;AluSx1_dup112694|chr21:5103328-5103510:+|1.5973470578528437|0.161594178134223|3.31|151.0|14|3|anti-sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|10|1|anti-sense;AluSp_dup32895|chr12:48934732-48935048:+|1.320267927406906|0.2698896703621427|2.29|151.0|11|1|anti-sense;AluSz_dup50139|chr9:121151379-121151690:-|1.1916663530598048|0.1011518170215417|3.56|151.0|10|1|anti-sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|14|1|anti-sense;ENST00000221419.9_1_19:39327147-39327285:-|nuORF;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|19|3|anti-sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|18|3|anti-sense;AluSz_dup88469|chr17:64341868-64342175:+|1.1054047891182786|0.1431819121058888|2.95|150.0|12|1|anti-sense;AluSq2_dup26457|chr8:37868140-37868446:+|1.1853063962241774|0.0908395726860895|3.71|151.0|15|1|anti-sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|18|2|anti-sense;AluSq2_dup22371|chr7:5314564-5314871:-|1.7995736157511657|0.405396187068398|2.15|151.0|19|3|anti-sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|15|2|anti-sense;AluSq_dup17594|chr19:48218348-48218653:-|1.0797732907998636|0.1289998801104817|3.07|151.0|13|1|anti-sense;AluSc8_dup17551|chr16:21444092-21444398:-|1.2392776490037605|0.1490810565795009|3.06|150.0|14|1|anti-sense;AluSc5_dup1372|chr3:152275429-152275733:+|1.1880608909720085|0.0271697228334584|5.45|151.0|11|1|anti-sense;AluSz_dup54566|chrX:119627792-119628088:-|3.9988562726998|0.3533891028812816|3.5|151.0|16|1|anti-sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|193|2|anti-sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|16|2|anti-sense;L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|107|1|anti-sense;AluSx1_dup3178|chr1:44527644-44527951:+|1.167101325874239|0.001986602724084|9.2|148.0|14|2|anti-sense;AluSq2_dup9527|chr2:233073358-233073666:+|1.6018182733609276|0.0136492514005818|6.87|151.0|15|3|anti-sense;AluSx_dup91527|chr16:22413633-22413939:-|1.1631420900961085|0.1614630633755779|2.85|151.0|21|3|anti-sense;AluSx4_dup1648|chr2:196169069-196169364:-|1.834119963367384|0.0371979367684726|5.62|151.0|10|1|anti-sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|11|1|anti-sense;AluSp_dup33931|chr12:104461882-104462196:+|2.5466834275478867|0.0440867020005679|5.85|151.0|19|3|anti-sense;L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|112|3|anti-sense;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|217|1|anti-sense;AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|14|1|anti-sense;L1MB2_dup1110|chr2:174094654-174095567:-|1.0354692058158286|0.0217369358693396|5.57|151.0|40|1|anti-sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|158|1|anti-sense;L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|148|1|anti-sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|35|1|anti-sense;AluSq2_dup55532|chr19:16644119-16644409:-|1.360485839958725|0.4201290823642067|1.7|151.0|11|1|anti-sense;ENST00000379731.4_1_9:33111209-33111335:-|nuORF;L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|51|1|anti-sense;AluJb_dup88547|chr13:28181239-28181528:+|2.0446042340516395|0.0191047931469688|6.74|151.0|15|1|anti-sense;AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|21|3|anti-sense;AluJo_dup70938|chr19:16082710-16083014:+|2.557266436045646|0.2008750745462186|3.67|151.0|12|1|anti-sense;HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|243|2|anti-sense;AluSc_dup28432|chr16:21850371-21850694:+|1.2902772062270744|0.2609913124527069|2.31|149.0|11|1|anti-sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|12|1|anti-sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|13|2|anti-sense;L1MC_dup1143|chr2:207589567-207590524:-|1.4972198668735612|0.0570738881957433|4.71|151.0|58|2|anti-sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|21|3|anti-sense;AluJb_dup113840|chr19:2292244-2292425:+|1.5910565974324509|0.1735916492752556|3.2|151.0|12|3|anti-sense;AluJo_dup41011|chrX:153619139-153619450:-|19.63834237078373|0.0015166892343507|13.66|141.0|13|1|anti-sense;AluSx1_dup7615|chr1:202148848-202149150:-|1.8983845594891853|0.1782362676694054|3.41|151.0|12|1|anti-sense;AluSg_dup30739|chr17:29785492-29785798:-|1.0075908180051814|0.0187094926981604|5.75|151.0|11|1|anti-sense;AluSg_dup15121|chr7:128655513-128655817:+|3.305765374298272|0.4587638308191766|2.85|151.0|16|2|anti-sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|18|2|anti-sense;AluJb_dup97408|chr15:64536595-64536939:+|1.1525906254041485|0.020058349977158|5.84|151.0|12|1|anti-sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|16|1|anti-sense;AluSq2_dup15563|chr4:168994746-168995056:-|1.1112800411118051|0.4884026382788179|1.19|151.0|17|1|anti-sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|267|3|anti-sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|13|1|anti-sense;AluSq2_dup39075|chr11:117091190-117091504:-|1.470955180927242|0.0275977348529068|5.74|151.0|20|3|anti-sense;AluSx1_dup37572|chr6:85635488-85635802:+|1.4954711006093628|0.0109237314065769|7.1|151.0|18|3|anti-sense;L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|150|3|anti-sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|13|1|anti-sense;L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|73|2|anti-sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|15|2|anti-sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|13|1|anti-sense;AluJo_dup5686|chr1:204533768-204534083:-|2.7061574181809127|0.269189131965984|3.33|151.0|12|1|anti-sense;ENST00000265371.8_1_10:33623524-33623671:-|nuORF;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|9|2|anti-sense;PABL_A-int_dup377|chr19:21086913-21089283:-|1.6634001843570188|0.0444668435413478|5.23|150.0|28|1|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|21|3|anti-sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|17|1|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|12|1|anti-sense;chr3:47714490-47718022|48|10.52|0.61|4.1|-|0|TE_info:AluJr,AluJr_dup14161,Alu,SINE,donor,+,47718022,47718162|SMARCC1,None|1;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|15|1|anti-sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|18|3|anti-sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|17|3|anti-sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|16|2|anti-sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|19|3|anti-sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|13|1|anti-sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|18|3|anti-sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|39|3|sense;AluJb_dup113840|chr19:2292244-2292425:+|1.5910565974324509|0.1735916492752556|3.2|151.0|8|1|anti-sense;L1MC5_dup3663|chr4:67486758-67487567:-|2.786133275381761|0.2302824489958324|3.6|151.0|46|2|anti-sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|285|2|anti-sense;AluJo_dup30459|chr7:101833268-101833589:+|1.343067545808836|0.0722647593166139|4.22|151.0|16|1|anti-sense;AluSx_dup7322|chr1:173995252-173995562:+|1.164299673152568|0.006359618828167|7.52|151.0|21|3|anti-sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|15|1|anti-sense;L1MC1_dup5132|chr6:41982290-41983047:+|1.2229567946180118|0.0224378843628742|5.77|151.0|40|2|anti-sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|13|2|anti-sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|18|2|anti-sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|14|1|anti-sense;ENST00000373886.7_1_10:60588703-60588985:+|nuORF;ENSG00000007341.19,ST7L,chr1,-,I21.1,112539276,112540778|23|4.29|1|intron;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|21|3|anti-sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|224|2|anti-sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|13|1|anti-sense;AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|15|2|anti-sense;AluSc_dup25033|chr13:32532579-32532889:-|1.1184956921245963|0.2759820341632037|2.02|151.0|14|1|anti-sense;ENSG00000234545.8,FAM133B,chr7,-,I3.1,92581807,92585297|24|5.04|1|intron;AluSx1_dup80101|chr13:50100294-50100593:+|1.5466399999492386|0.0149047366921249|6.7|151.0|12|2|anti-sense;AluSx_dup91655|chr16:23911827-23912126:-|1.0168378985134767|0.0046533910822485|7.77|151.0|9|1|anti-sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|15|2|anti-sense;AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|11|1|anti-sense;AluSx1_dup97889|chr17:47439167-47439476:-|1.15055340766647|0.1603257913730753|2.84|151.0|21|3|anti-sense;AluSx1_dup3178|chr1:44527644-44527951:+|1.167101325874239|0.001986602724084|9.2|148.0|13|1|anti-sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|17|2|anti-sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|16|2|anti-sense;AluSq2_dup55467|chr19:15316362-15316619:+|1.0051527069669488|0.0234474362759726|5.42|151.0|13|2|anti-sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|21|3|anti-sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|59|1|anti-sense;AluSx_dup97031|chr17:30780971-30781278:-|1.284802133161412|0.2359223228121592|2.45|151.0|11|1|anti-sense;ENSG00000087157.19,PGS1,chr17,+,I2.1,78381018,78382663|116|6.42|1|intron;AluSz_dup2843|chr1:44488709-44489029:-|2.021063283771314|0.001508016629532|10.39|149.0|17|2|anti-sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|211|2|anti-sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|13|1|anti-sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|13|2|anti-sense;L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|131|2|anti-sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|100|1|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|287|1|anti-sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|17|3|anti-sense;ENSG00000122483.17,CCDC18,chr1,+,I23.1,93246955,93254470|34|6.65|1|intron;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|16|2|anti-sense;AluSz_dup71985|chr13:46134841-46135136:+|1.001121318446743|0.069485534442065|3.85|151.0|20|2|anti-sense;L1MB1_dup2595|chr7:131064166-131065145:+|1.4001883354774138|0.0287190868240749|5.61|151.0|55|2|anti-sense;AluJb_dup1734|chr1:21158170-21158475:-|1.2076706678510487|0.0119280124396376|6.66|151.0|13|1|anti-sense;AluJb_dup108985|chr17:58265574-58265884:-|1.105951891051778|0.0026692216152215|8.69|143.0|15|1|anti-sense;ENSG00000213468.7,FIRRE,chrX,-,I14.1,131711745,131743095|30|7.59|1|intron;ENSG00000198521.12,ZNF43,chr19,-,I3.1,21845507,21849913|73|9.81|1|intron;ENSG00000175115.13,PACS1,chr11,+,I3.1,66100875,66121020|34|13.94|1|intron;ENSG00000183793.14,NPIPA5,chr16,-,I5.1,15366761,15369711|62|6.72|1|intron;ENSG00000108306.13,FBXL20,chr17,-,I12.1,39270857,39274969|23|8.05|1|intron;ENSG00000162542.13,TMCO4,chr1,-,I7.1,19755767,19770541|62|6.14|1|intron;ENSG00000066136.20,NFYC,chr1,+,I6.1,40712470,40712686|75|9.71|1|intron;nc|ENSG00000174898|Q86XM0-2|CATSPERD;ENSG00000177565.18,TBL1XR1,chr3,-,I6.1,177171418,177194063|27|12.97|1|intron;ENSG00000165995.22,CACNB2,chr10,+,I22.1,18536197,18538179|36|4.55|1|intron;ENST00000332995.11_1_6:13288134-13288596:+|nuORF;L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|4|1|sense;nc|ENSG00000137090|Q9Y5R6-3|DMRT1;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|50|3|anti-sense;L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|165|1|anti-sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|15|2|anti-sense;AluSx1_dup19495|chr3:50339355-50339668:-|1.1836872178441429|0.0999671576793565|3.57|151.0|13|1|anti-sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|20|2|anti-sense;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|15|2|anti-sense;AluSx1_dup96395|chr17:29746264-29746577:+|1.1894265863130384|0.0626124722347983|4.25|151.0|13|1|anti-sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|20|3|anti-sense;ENSG00000069956.12,MAPK6,chr15,+,I7.1,52027874,52042753|23|8.54|1|intron;AluSx1_dup90936|chr16:23873047-23873400:+|1.356324635675553|0.0215145511172893|5.98|151.0|23|3|anti-sense;ENSG00000213096.11,ZNF254,chr19,+,I3.1,24087338,24091900|65|11.27|1|intron;AluJb_dup104807|chr16:89407551-89407882:+|1.1644613920390687|0.0215228538272297|5.76|151.0|14|1|anti-sense;AluSz6_dup8929|chr3:71776336-71776677:-|1.0979109594689225|0.1281722971251909|3.1|144.0|16|2|anti-sense;ENSG00000141252.20,VPS53,chr17,-,I29.1,522996,531967|25|10.33|1|intron;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|15|1|anti-sense;ENSG00000089234.16,BRAP,chr12,-,I2.1,111681836,111683145|53|5.24|1|intron;L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|56|2|anti-sense;ENST00000358372.8_1_6:160176668-160176878:+|nuORF;ENST00000335154.9_1_12:50038759-50038969:-|nuORF;AluY_dup17374|chr3:15776994-15777301:+|2.6851697133845747|0.0122014572588756|7.78|151.0|19|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|362|2|anti-sense;AluSx1_dup2996|chr1:40379556-40379830:-|1.0734850380898209|0.0373707842060271|4.84|151.0|12|1|anti-sense;AluY_dup66532|chr11:66619558-66619865:-|2.019233300739974|0.4917919692698633|2.04|151.0|18|2|anti-sense;AluY_dup47539|chr8:67209872-67210180:+|1.5811442226867714|0.1000343144832197|3.98|151.0|11|1|anti-sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|15|2|anti-sense;AluJb_dup83343|chr12:50157788-50158084:+|1.039969110704712|0.0363499884744544|4.84|151.0|13|1|anti-sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|214|1|anti-sense;AluSz_dup89155|chr17:75321170-75321476:-|2.5917560272394|0.3558438514080545|2.86|151.0|17|2|anti-sense;MER63A_dup2935|chr16:23945682-23945927:-|1.638367061394802|0.0087545938386628|7.55|151.0|3|2|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|11|1|anti-sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|20|3|anti-sense;AluSc_dup11622|chr6:15261303-15261619:-|1.3857046107551485|0.0084049862416929|7.37|151.0|12|1|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|299|3|anti-sense;ENST00000407418.7_1_22:39258389-39258611:-|nuORF;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|41|2|anti-sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|16|1|anti-sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|13|1|anti-sense;AluY_dup54770|chrX:1498125-1498435:+|1.1865320543414275|0.0084966476498408|7.13|151.0|10|1|anti-sense;ENST00000452676.6_1_19:53662039-53662234:-|nuORF;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|17|2|anti-sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|21|3|anti-sense;ENST00000323460.9_1_3:196659561-196659759:+|nuORF;AluJb_dup109963|chr17:68120862-68121160:+|1.039969110704712|0.1263125355173859|3.04|149.0|12|1|anti-sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|17|2|anti-sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|17|2|anti-sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|18|3|anti-sense;L1MA7_dup6915|chr13:109462640-109463976:-|1.7794656580421395|0.0132697847670268|7.07|137.0|86|2|anti-sense;L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|58|3|anti-sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|9|2|anti-sense;L1PA15_dup3405|chr7:18433024-18435422:+|2.3708425199591807|0.0183684850698486|7.01|151.0|127|3|anti-sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|8|1|anti-sense;L1MB1_dup2595|chr7:131064166-131065145:+|1.4001883354774138|0.0287190868240749|5.61|151.0|46|1|anti-sense;L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|68|1|anti-sense;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|12|1|anti-sense;AluSx1_dup3178|chr1:44527644-44527951:+|1.167101325874239|0.001986602724084|9.2|148.0|17|3|anti-sense;AluSz_dup54566|chrX:119627792-119628088:-|3.9988562726998|0.3533891028812816|3.5|151.0|23|3|anti-sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|19|3|anti-sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|20|3|anti-sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|15|2|anti-sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|15|1|anti-sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|14|1|anti-sense;AluSq2_dup58172|chr20:35725653-35725963:-|1.465704079377304|0.2517570946255212|2.54|151.0|19|3|anti-sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|13|1|anti-sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|13|1|anti-sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|15|1|anti-sense;AluJb_dup144|chr1:1883020-1883308:+|1.2509263987826071|0.0177470246572713|6.14|151.0|21|3|anti-sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|14|1|anti-sense;AluSx1_dup43965|chr7:75378486-75378800:+|1.0224601099708013|0.0739587964535085|3.79|145.0|18|2|anti-sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|12|1|anti-sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|19|2|anti-sense;AluSg7_dup2690|chr5:169891704-169892025:+|1.3323361173282242|0.0424876230457909|4.97|151.0|14|2|anti-sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|18|3|anti-sense;AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|12|1|anti-sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|16|2|anti-sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|21|3|anti-sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|17|2|anti-sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|11|1|anti-sense;AluSq2_dup9527|chr2:233073358-233073666:+|1.6018182733609276|0.0136492514005818|6.87|151.0|11|1|anti-sense;L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|97|1|anti-sense;AluSc5_dup1372|chr3:152275429-152275733:+|1.1880608909720085|0.0271697228334584|5.45|151.0|18|3|anti-sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|20|3|anti-sense;AluSg_dup1036|chr1:44627065-44627370:+|1.2503119037881556|0.0163544881670791|6.26|148.0|13|1|anti-sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|22|3|anti-sense;AluSx1_dup44541|chr7:92646386-92646697:-|2.511429131804846|0.0230098990658918|6.77|151.0|14|1|anti-sense;AluSx4_dup1648|chr2:196169069-196169364:-|1.834119963367384|0.0371979367684726|5.62|151.0|17|3|anti-sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|17|3|anti-sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|14|2|anti-sense;L1MDa_dup2172|chr5:178507535-178508978:-|1.3830038419623665|0.0270122292401413|5.68|146.0|72|2|anti-sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|21|3|anti-sense;L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|126|1|anti-sense;AluSx1_dup2258|chr1:29177894-29178199:-|4.125212135652754|0.3579453877987234|3.53|151.0|14|1|anti-sense;AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|18|2|anti-sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|222|2|anti-sense;AluSx1_dup30845|chr5:70990382-70990686:+|1.38379411938314|0.1542195295841979|3.17|148.0|17|2|anti-sense;AluJb_dup80445|chr11:117071625-117071918:-|4.0875692538386|0.0158871150886003|8.01|151.0|22|3|anti-sense;MER65-int_dup267|chr4:139160991-139161688:+|3.4070951132217724|0.0661692845245318|5.69|151.0|37|2|anti-sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|7|2|sense;L1PA2_dup4189|chr13:95733700-95740837:-|4.433547310000071|0.1352278297417478|5.03|151.0|285|2|anti-sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|243|3|anti-sense;L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|25|1|anti-sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|11|1|anti-sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|22|2|anti-sense;ERV3-16A3_I-int_dup719|chr2:143262382-143263413:-|3.4095799104971447|0.0122105501181654|8.13|151.0|58|2|anti-sense;Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|54|3|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|18|3|anti-sense;AluSx1_dup54678|chr9:89320075-89320380:+|1.1518237645606628|0.1699373286139705|2.76|151.0|17|2|anti-sense;AluJr_dup54031|chr11:128743108-128743429:+|1.484321950600551|0.0218258727063038|6.09|151.0|14|1|anti-sense;AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|18|3|anti-sense;AluJb_dup36092|chr5:70989821-70990010:-|2.211852482793979|0.0693417533637569|5.0|151.0|12|3|anti-sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|13|2|anti-sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|13|1|anti-sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|15|1|anti-sense;L1PA2_dup551|chr2:143661563-143667611:+|6.154483636234586|0.1044371447650175|5.88|151.0|286|3|anti-sense;L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|151|1|anti-sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|19|2|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|54|1|anti-sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|55|3|anti-sense;L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|243|3|anti-sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|211|1|anti-sense;AluSq2_dup43013|chr13:50076127-50076300:-|1.1694993928611372|0.0316751327751098|5.21|151.0|7|1|anti-sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|264|2|anti-sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|14|1|anti-sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|28|3|anti-sense;L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|155|3|anti-sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|19|3|anti-sense;AluJr_dup32179|chr7:72976786-72977101:-|1.8347240277202792|0.1568731953331971|3.55|151.0|20|2|anti-sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|20|3|anti-sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|11|1|anti-sense;MER65-int_dup267|chr4:139160991-139161688:+|3.4070951132217724|0.0661692845245318|5.69|151.0|27|1|anti-sense;AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|13|1|anti-sense;AluSx_dup24440|chr3:195321217-195321495:-|1.1918532753262188|0.0350445463337739|5.09|151.0|12|1|anti-sense;AluY_dup20748|chr3:128744863-128745172:-|1.3995828524395022|0.0193729715410296|6.17|151.0|22|3|anti-sense;AluJb_dup101209|chr16:21868299-21868609:+|1.8797539312591889|0.200150386994308|3.23|151.0|15|1|anti-sense;AluSq2_dup22371|chr7:5314564-5314871:-|1.7995736157511657|0.405396187068398|2.15|151.0|12|1|anti-sense;AluSx_dup71302|chr11:65897328-65897639:-|1.267288212940067|0.1053205937445214|3.59|151.0|12|1|anti-sense;AluJo_dup1804|chr1:35827788-35828044:-|1.3348464510809412|0.0785045021780359|4.09|151.0|10|1|anti-sense;AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|15|1|anti-sense;chr16:74336706-74337109|41|11.93|0.29|5.34|-|2|TE_info:AluJb,AluJb_dup104040,Alu,SINE,donor,+,74337109,74337244|PDPR2P,None|1;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|22|2|sense;AluJr_dup4196|chr1:149471890-149472193:+|1.6143741810683374|0.1202273204748408|3.75|150.0|15|2|anti-sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|19|2|anti-sense;AluJr_dup4116|chr1:146148509-146148813:-|2.5149217557996475|0.1449563314920023|4.12|151.0|18|3|anti-sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|15|2|anti-sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|15|1|anti-sense;AluJb_dup41222|chr6:24850086-24850399:-|1.6841640653793342|0.2452854032988079|2.78|151.0|10|1|anti-sense;AluJr_dup64769|chr15:72575300-72575576:+|1.2241448226281189|0.2869398917780198|2.09|151.0|18|2|anti-sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|291|3|anti-sense;AluJo_dup69910|chr19:7392772-7393077:+|2.764524251754442|0.0365277377957557|6.24|151.0|13|1|anti-sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|89|2|anti-sense;AluSx1_dup6847|chr1:174832011-174832350:+|1.1491070410142914|0.0567235153779455|4.34|148.0|13|1|anti-sense;AluSq2_dup54614|chr19:1589058-1589371:+|1.0762494540455585|0.3092428470924084|1.8|151.0|13|1|anti-sense;L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|340|3|anti-sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|15|2|anti-sense;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|354|3|anti-sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|85|2|anti-sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|15|1|anti-sense;AluSg7_dup5571|chr12:11667697-11667999:-|1.213423336986982|0.0070483492813523|7.43|151.0|11|1|anti-sense;L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|223|1|anti-sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|282|3|anti-sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|17|2|anti-sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|33|1|anti-sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|14|3|anti-sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|18|3|anti-sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|15|2|anti-sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|18|3|anti-sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|18|2|anti-sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|16|2|anti-sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|18|2|anti-sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|14|1|anti-sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|18|3|anti-sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|11|1|anti-sense;AluJo_dup46523|chr11:33268313-33268616:+|2.274186437487737|0.0523862250563642|5.44|151.0|13|1|anti-sense;AluSx1_dup113502|chr21:34854410-34854613:+|1.316746649678359|0.0210558908533853|5.97|151.0|12|2|anti-sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|12|2|anti-sense;AluJo_dup12512|chr3:11433014-11433315:+|1.069328689943798|0.0228641379647942|5.55|151.0|22|3|anti-sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|18|3|anti-sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|20|3|anti-sense;AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|19|3|anti-sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|22|3|anti-sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|16|2|anti-sense;AluJb_dup50607|chr7:100313579-100313914:+|3.5071432978935126|0.0240933012090079|7.19|151.0|13|1|anti-sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|13|2|anti-sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|17|2|anti-sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|20|3|anti-sense;AluJb_dup45261|chr6:136786795-136786941:-|1.2117731304626962|0.0401334428352434|4.92|151.0|9|1|anti-sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|18|3|anti-sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|14|3|anti-sense;AluY_dup33776|chr5:177071406-177071713:+|1.02189231345965|0.2899967782079396|1.82|151.0|19|2|anti-sense;AluSz6_dup33173|chr12:118209703-118210001:-|1.4085312980056075|0.0052303843702154|8.07|151.0|12|1|anti-sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|20|3|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|19|3|anti-sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|17|2|anti-sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|13|1|anti-sense;AluJb_dup88520|chr13:28047428-28047740:+|1.4645159655989155|0.0031173096032828|8.88|151.0|12|1|anti-sense;AluSx1_dup57540|chrX:1476908-1477218:+|1.5401912601292471|0.0055350266363355|8.12|151.0|19|3|anti-sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|17|2|anti-sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|64|1|anti-sense;AluSc8_dup6068|chr5:21490906-21491211:+|1.6303616396721212|0.0578912547365355|4.82|151.0|12|1|anti-sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|11|1|anti-sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|14|1|anti-sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|13|1|anti-sense;AluJb_dup15266|chr2:74096810-74097121:+|1.0188423160046711|0.0464254213681194|4.46|151.0|17|2|anti-sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|22|3|anti-sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|18|3|anti-sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|18|2|anti-sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|12|1|anti-sense;Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|26|2|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|17|2|anti-sense;AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|15|3|anti-sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|15|1|anti-sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|20|3|anti-sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|15|2|anti-sense;AluJb_dup2377|chr1:26758303-26758647:+|1.3786207584175247|0.0197503006114131|6.13|151.0|13|1|anti-sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|20|3|anti-sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|17|2|anti-sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|20|3|anti-sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|20|3|anti-sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|17|2|anti-sense;L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|177|1|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|76|2|anti-sense;Tigger1_dup3851|chr5:14494916-14495686:+|1.3820741180520584|0.2801861438051811|2.3|151.0|43|3|anti-sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|159|1|anti-sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|132|2|anti-sense;AluJr_dup79608|chr19:45859760-45860148:+|1.849819798513756|0.3617442697558052|2.35|151.0|19|2|anti-sense;L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|128|2|anti-sense;L1MEc_dup18265|chr22:40074968-40076134:-|3.4911001896262945|0.0116015503262547|8.23|151.0|46|1|anti-sense;AluSx_dup20237|chr3:50008547-50008850:-|1.1151269309956109|0.0089597832156314|6.96|151.0|20|3|anti-sense;AluJr_dup70324|chr17:1551274-1551595:-|2.0241217357095302|0.1973510371474596|3.36|151.0|14|1|anti-sense;AluSz6_dup8929|chr3:71776336-71776677:-|1.0979109594689225|0.1281722971251909|3.1|144.0|17|3|anti-sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|11|1|anti-sense;L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|131|2|anti-sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|22|3|anti-sense;L1ME4a_dup28811|chr15:90019126-90019528:-|1.3220892467871113|0.0115155445825711|6.84|150.0|20|3|anti-sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|25|3|anti-sense;AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|19|3|anti-sense;L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|138|3|anti-sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|14|2|anti-sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|18|1|anti-sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|15|2|anti-sense;AluSx3_dup4731|chr2:196161512-196161815:-|1.961273574569656|0.0360400417345166|5.77|151.0|17|2|anti-sense;AluSx_dup70053|chr11:33877459-33877760:-|2.87268547091201|0.0052982181901923|9.08|151.0|14|1|anti-sense;ENST00000395246.5_1_5:130729482-130729578:+|nuORF;MER65C_dup201|chr5:50426822-50427289:+|2.3711145328219936|0.0374419273172825|5.98|151.0|37|3|anti-sense;chr19:42122576-42124179|98|13.41|0.11|6.9|-|1|TE_info:AluJb,AluJb_dup117289,Alu,SINE,donor,+,42124179,42124333|POU2F2,None|1;AluSz6_dup36663|chr15:51920321-51920650:+|1.0227141401479731|0.0209575801242003|5.61|151.0|16|1|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|73|1|anti-sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|16|2|anti-sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|96|2|anti-sense;ENST00000375650.4_1_6:31797896-31797989:+|nuORF;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|18|3|anti-sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|169|1|anti-sense;AluJr_dup8341|chr2:46632010-46632312:+|1.0760564848840526|0.0864158071761108|3.64|151.0|15|1|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|99|3|anti-sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|19|2|anti-sense;AluSg_dup28683|chr16:1754492-1754784:+|1.2888519958983002|0.3768154835575893|1.77|151.0|18|3|anti-sense;AluJb_dup105046|chr17:1391936-1392214:+|1.00816676553668|0.0111182398072063|6.5|151.0|14|1|anti-sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|143|1|anti-sense;AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|16|1|anti-sense;L1MA7_dup6915|chr13:109462640-109463976:-|1.7794656580421395|0.0132697847670268|7.07|137.0|71|1|anti-sense;AluJb_dup109963|chr17:68120862-68121160:+|1.039969110704712|0.1263125355173859|3.04|149.0|18|3|anti-sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|17|2|anti-sense;AluJo_dup41011|chrX:153619139-153619450:-|19.63834237078373|0.0015166892343507|13.66|141.0|21|3|anti-sense;AluJo_dup12512|chr3:11433014-11433315:+|1.069328689943798|0.0228641379647942|5.55|151.0|13|1|anti-sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|24|3|anti-sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|13|1|anti-sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|13|1|anti-sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|23|3|anti-sense;AluJo_dup16959|chr4:37673177-37673491:-|1.3339420807382287|0.0420036789527594|4.99|151.0|18|2|anti-sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|13|3|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|19|2|anti-sense;ENST00000369295.3_1_10:115805496-115805616:+|nuORF;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|18|3|anti-sense;AluSx4_dup10648|chr20:50919997-50920291:+|1.1962134286110293|0.026064382395244|5.52|151.0|10|2|anti-sense;L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|17|1|anti-sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|278|2|anti-sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|11|1|anti-sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|12|1|anti-sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|12|1|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|15|2|anti-sense;AluSc8_dup6068|chr5:21490906-21491211:+|1.6303616396721212|0.0578912547365355|4.82|151.0|22|3|anti-sense;AluSg_dup1036|chr1:44627065-44627370:+|1.2503119037881556|0.0163544881670791|6.26|148.0|20|3|anti-sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|22|3|anti-sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|341|3|anti-sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|13|1|anti-sense;AluJb_dup47888|chr7:36510980-36511289:-|2.225694209149911|0.1916892971342379|3.54|150.0|15|2|anti-sense;L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|343|3|anti-sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|19|2|anti-sense;AluSq2_dup26458|chr8:37890660-37890800:+|2.0657867527981497|0.0221373056220467|6.54|151.0|8|3|anti-sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|22|3|anti-sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|14|1|anti-sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|21|2|anti-sense;L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|119|2|anti-sense;AluSx_dup91527|chr16:22413633-22413939:-|1.1631420900961085|0.1614630633755779|2.85|151.0|13|1|anti-sense;L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|155|3|anti-sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|18|2|anti-sense;AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|20|3|anti-sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|15|3|anti-sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|16|3|anti-sense;AluJr_dup14337|chr3:50011840-50012151:-|1.116092151467504|0.0141893560095886|6.3|151.0|19|3|anti-sense;AluSx1_dup104078|chr19:7433738-7434047:+|1.6683328942837268|0.0228876494684527|6.19|151.0|15|2|anti-sense;AluJb_dup97579|chr15:65763408-65763703:+|1.3433784874354306|0.0201336272578817|6.06|151.0|12|1|anti-sense;L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|76|1|anti-sense;AluJb_dup125412|chr22:40535342-40535652:-|1.0963791590991123|0.0700071834268548|3.97|151.0|17|2|anti-sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|45|2|anti-sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|44|3|sense;Tigger1_dup3851|chr5:14494916-14495686:+|1.3820741180520584|0.2801861438051811|2.3|151.0|36|2|anti-sense;L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|26|1|anti-sense;L1MA3_dup5497|chrX:97005839-97007750:-|1.032282572902376|0.0206790410450002|5.64|150.0|80|2|anti-sense;AluJo_dup46523|chr11:33268313-33268616:+|2.274186437487737|0.0523862250563642|5.44|151.0|16|2|anti-sense;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|221|2|anti-sense;AluSx_dup97031|chr17:30780971-30781278:-|1.284802133161412|0.2359223228121592|2.45|151.0|16|3|anti-sense;AluSc_dup23506|chr12:27006129-27006436:-|1.0487556229545705|0.0307910336332092|5.09|151.0|12|1|anti-sense;Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|114|2|anti-sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|15|2|anti-sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|114|3|anti-sense;AluSx_dup80001|chr13:28026070-28026377:+|2.181503472852325|0.0181786348964794|6.91|151.0|14|1|anti-sense;AluSz_dup100480|chr21:34826427-34826743:-|3.906401736549194|0.0988936738004072|5.3|151.0|22|3|anti-sense;chr16:74336706-74337093|50|11.8|0.28|5.42|-|1|TE_info:AluJb,AluJb_dup104040,Alu,SINE,donor,+,74337093,74337244|PDPR2P,None|1;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|18|3|anti-sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|15|1|anti-sense;L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|322|3|anti-sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|21|3|anti-sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|9|1|anti-sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|13|1|anti-sense;AluSx_dup20237|chr3:50008547-50008850:-|1.1151269309956109|0.0089597832156314|6.96|151.0|12|1|anti-sense;AluJb_dup10138|chr1:206701552-206701856:+|1.1185108817227272|0.0171765571603535|6.02|151.0|14|2|anti-sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|12|2|anti-sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|15|1|anti-sense;Tigger1_dup3851|chr5:14494916-14495686:+|1.3820741180520584|0.2801861438051811|2.3|151.0|29|1|anti-sense;AluSq2_dup15563|chr4:168994746-168995056:-|1.1112800411118051|0.4884026382788179|1.19|151.0|24|3|anti-sense;AluSx_dup85633|chr14:102619474-102619780:-|1.15055340766647|0.0074838850254244|7.26|151.0|13|1|anti-sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|20|2|anti-sense;AluSq_dup18355|chr21:34874328-34874635:+|1.6318296067023028|0.0459538803038942|5.15|151.0|16|2|anti-sense;AluJr_dup13759|chr3:33548760-33549054:-|1.2844856692523572|0.2441155484820085|2.4|151.0|17|2|anti-sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|14|1|anti-sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|19|3|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|190|1|anti-sense;AluJr_dup64769|chr15:72575300-72575576:+|1.2241448226281189|0.2869398917780198|2.09|151.0|15|1|anti-sense;AluSp_dup35040|chr13:40934417-40934719:-|1.4738648391266702|0.235376945372961|2.65|151.0|14|1|anti-sense;AluJr_dup79608|chr19:45859760-45860148:+|1.849819798513756|0.3617442697558052|2.35|151.0|16|1|anti-sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|19|2|anti-sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|15|1|anti-sense;L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|126|2|anti-sense;L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|104|3|anti-sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|2|1|sense;AluJr_dup4116|chr1:146148509-146148813:-|2.5149217557996475|0.1449563314920023|4.12|151.0|13|1|anti-sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|12|1|anti-sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|161|3|anti-sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|167|1|anti-sense;AluJr_dup37343|chr8:55889996-55890341:+|1.884988129433001|0.0217587316342579|6.44|151.0|25|3|anti-sense;AluJb_dup2247|chr1:25872510-25872810:-|1.3497471436805837|0.2136152214269012|2.66|151.0|15|1|anti-sense;AluJb_dup108985|chr17:58265574-58265884:-|1.105951891051778|0.0026692216152215|8.69|143.0|19|3|anti-sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|15|1|anti-sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|15|2|anti-sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|120|3|anti-sense;AluSz6_dup29367|chr11:33279034-33279353:+|1.4850189648933|0.050532709470012|4.88|151.0|19|3|anti-sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|10|3|anti-sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|351|3|anti-sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|11|1|anti-sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|23|3|anti-sense;L1HS_dup1059|chrX:101471545-101475011:+|1.664545474199124|0.4193523476151798|1.99|151.0|99|1|anti-sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|11|1|anti-sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|19|2|anti-sense;ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|55|3|anti-sense;AluJb_dup119245|chr20:4007623-4007927:+|1.112108091038304|0.0081965775816425|7.08|151.0|18|3|anti-sense;L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|217|1|anti-sense;L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|100|1|anti-sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|16|1|anti-sense;ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron;ENSG00000004897.12,CDC27,chr17,-,I3.1,47172065,47181281|28|11.66|1|intron;ENST00000505490.2_1_17:79845792-79845960:-|nuORF;L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|21|2|sense;L1PREC2_dup3379|chr7:77365234-77368106:-|1.8557664641334937|0.1116663482849616|4.05|151.0|170|3|anti-sense;ENST00000234310.7_1_2:68406085-68406229:-|nuORF;PABL_A-int_dup80|chr4:87364176-87364890:+|1.3072495843094871|0.0356182367944581|5.2|151.0|37|2|anti-sense;L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|61|2|anti-sense;Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|1|1|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|66|1|anti-sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|17|2|anti-sense;L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|45|2|anti-sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|19|2|anti-sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|16|3|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|247|2|anti-sense;L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|44|1|anti-sense;L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|64|1|anti-sense;L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|63|2|anti-sense;L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|214|1|anti-sense;Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|80|1|anti-sense;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|103|3|anti-sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|206|2|anti-sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|16|1|anti-sense;ENST00000557320.5_1_14:96999700-97000015:+|nuORF;ENSG00000127922.9,SEM1,chr7,-,I2.1,96706396,96708147|32|11.57|1|intron;L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|97|2|anti-sense;L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|262|2|anti-sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|16|2|anti-sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|11|2|anti-sense;ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron;ENST00000355683.9_2_14:31364241-31364373:-|nuORF;ENST00000527958.5_1_11:117039007-117039196:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron;ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron;REV__ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron;Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|80|1|anti-sense;REV__ENSG00000165995.22,CACNB2,chr10,+,I22.1,18536197,18538179|36|4.55|1|intron;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|103|3|anti-sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|16|2|anti-sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|11|2|anti-sense;ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron;ENST00000355683.9_2_14:31364241-31364373:-|nuORF;ENST00000527958.5_1_11:117039007-117039196:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;REV__ENST00000373886.7_1_10:60588703-60588985:+|nuORF;REV__HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|287|1|anti-sense ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron MSMS UPN47_class_I_Rep_1 2 598.2862548828125 2 598.286214 1194.55788 NaN NaN NaN NaN NaN NaN NaN 78.011 1 81.44 80.94 81.94 3.4289 0 0 0 0.40738 1 19379 19379 0.79363 0 1 7314 2544;20148;2747;19010;33173;6914;258;95;210;213;3929;6281;7274;7305;21993;23786 4509 4514 9166 9166 -0.03162060706722514 FFFFFGMLS 9 Unmodified _FFFFFGMLS_ 0 0 0 REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|266|3|anti-sense REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|266|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.7733154296875 2 571.772614 1141.53067 0.47799 0.0002733 0.41509 0.00023734 0.89308 0.00051064 571.7727367786438 85.172 0.11669 85.172 85.098 85.215 0 17 13 2 0 0 0 0.48643 1 20306 20306 2.0598 0.40713 1 116930 + 7315 29255 4510 4515 9167 9167 -0.034429123093786984 FFFFFLYL 8 Unmodified _FFFFFLYL_ 0 0 0 L1MC4_dup1507|chr1:202533618-202534655:-|1.009422724888967|0.0281629081628183|5.16|151.0|55|2|anti-sense L1MC4_dup1507|chr1:202533618-202534655:-|1.009422724888967|0.0281629081628183|5.16|151.0|55|2|anti-sense L1MC4_dup1507|chr1:202533618-202534655:-|1.009422724888967|0.0281629081628183|5.16|151.0|55|2|anti-sense MSMS UPN46_class_I_Rep_3 1 572.69580078125 2 572.299322 1142.58409 NaN NaN NaN NaN NaN NaN NaN 54.661 1 54.661 54.161 55.161 0 0 0 0 0.40581 1 11847 11847 2.8892 0 1 7316 11409 4511 4516 9168 9168 0.018502084647707306 FFFFFMIL 8 Unmodified _FFFFFMIL_ 0 0 0 Tigger2_dup1162|chr6:110788458-110789285:-|1.0887672735844294|0.0206633290588017|5.72|151.0|36|1|anti-sense Tigger2_dup1162|chr6:110788458-110789285:-|1.0887672735844294|0.0206633290588017|5.72|151.0|36|1|anti-sense Tigger2_dup1162|chr6:110788458-110789285:-|1.0887672735844294|0.0206633290588017|5.72|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_3 4 556.287109375 2 556.2879 1110.56125 NaN NaN NaN NaN NaN NaN NaN 63.633 1 66.807 66.307 67.307 3.1741 0 0 0 0.4032 1 15165 15165 6.3541 0 1 7317 33270 4512 4517 9169 9169 0.010388660756461832 FFFFFNRDG 9 Unmodified _FFFFFNRDG_ 0 0 0 AluSz_dup69294|chr12:110400764-110401069:+|2.3594993790584136|0.2032053769832881|3.54|151.0|17|3|anti-sense;AluJo_dup65848|chr17:46493160-46493461:-|1.3341015044572218|0.0877093869621086|3.93|148.0|10|1|anti-sense AluSz_dup69294|chr12:110400764-110401069:+|2.3594993790584136|0.2032053769832881|3.54|151.0|17|3|anti-sense AluSz_dup69294|chr12:110400764-110401069:+|2.3594993790584136|0.2032053769832881|3.54|151.0|17|3|anti-sense MSMS UPN47_class_I_Rep_3 4 598.7810668945312 2 598.779816 1195.54508 NaN NaN NaN NaN NaN NaN NaN 72.065 1 75.284 74.784 75.784 3.2188 0 0 0 0.39598 1 17718 17718 1.6526 0.45928 1 7318 121 4513 4518 9170 9170 -0.04487123836906903 FFFFFPDGH 9 Unmodified _FFFFFPDGH_ 0 0 0 L1ME2_dup1554|chr2:99719051-99719768:-|1.022006623338764|0.0171946378323308|5.89|148.0|44|3|anti-sense L1ME2_dup1554|chr2:99719051-99719768:-|1.022006623338764|0.0171946378323308|5.89|148.0|44|3|anti-sense L1ME2_dup1554|chr2:99719051-99719768:-|1.022006623338764|0.0171946378323308|5.89|148.0|44|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2667846679688 2 580.763635 1159.51272 -0.059987 -3.4838E-05 2.388 0.0013869 2.328 0.001352 580.7649857810156 33.333 0.32214 37.031 36.938 37.26 3.6983 32 19 2 0 0 0 0.48846 1 5837 5837 1.8442 0.36234 1 71513 7319 12487 4514 4519 9171 9171 -0.06065911239898014 FFFFFWWWLLF 11 Unmodified _FFFFFWWWLLF_ 0 0 0 AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 562.61669921875 3 562.616315 1684.82712 NaN NaN NaN NaN NaN NaN NaN 36.755 1 40.002 39.502 40.502 3.247 0 0 0 0.38417 1 6967 6967 0 0 1 7320 72 4515 4520 9172 9172 0.012094531897901106 FFFFGNFLPC 10 Unmodified _FFFFGNFLPC_ 0 0 0 REV__L1PREC2_dup5686|chr11:94556125-94557023:-|1.3698488603960326|0.1207551798849067|3.5|151.0|38|2|anti-sense REV__L1PREC2_dup5686|chr11:94556125-94557023:-|1.3698488603960326|0.1207551798849067|3.5|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 619.7880249023438 2 619.788795 1237.56304 NaN NaN NaN NaN NaN NaN NaN 75.291 1 78.603 78.103 79.103 3.3127 0 0 0 0.53105 1 18583 18583 1.6526 0.17072 1 + 7321 30726 4516 4521 9173 9173 -0.04624124906399629 FFFFLMCW 8 Unmodified _FFFFLMCW_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|72|2|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|72|2|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2872924804688 2 570.75591 1139.49727 NaN NaN NaN NaN NaN NaN NaN 111.4 1 114.97 114.47 115.47 3.572 0 0 0 0.40738 1 27478 27478 0.79363 0 1 7322 11338 4517 4522 9174 9174 -0.06690237352972872 FFFFNKQKE 9 Unmodified _FFFFNKQKE_ 0 0 0 Tigger3b_dup4863|chr12:93429507-93430398:+|1.9554979469892328|0.0466339406567228|5.39|151.0|62|2|anti-sense Tigger3b_dup4863|chr12:93429507-93430398:+|1.9554979469892328|0.0466339406567228|5.39|151.0|62|2|anti-sense Tigger3b_dup4863|chr12:93429507-93430398:+|1.9554979469892328|0.0466339406567228|5.39|151.0|62|2|anti-sense MSMS UPN48_class_I_Rep_2 6 617.8169555664062 2 617.816399 1233.61824 NaN NaN NaN NaN NaN NaN NaN 30.388 1 34.023 33.523 34.523 3.6351 0 0 0 0.40038 1 4440 4440 0.6015 0 1 7323 33398 4518 4523 9175 9175 0.010780048857213842 FFFFPLTMF 9 Unmodified _FFFFPLTMF_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|34|2|anti-sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|34|2|anti-sense MSMS UPN48_class_I_Rep_2 6 598.7965087890625 2 598.796089 1195.57763 NaN NaN NaN NaN NaN NaN NaN 50.707 1 54.375 53.875 54.875 3.6679 0 0 0 0.39518 1 10378 10378 1.8442 0 1 + 7324 26951 4519 4524 9176 9176 -0.012340527582864524 FFFFPPETF 9 Unmodified _FFFFPPETF_ 0 0 0 L1MEd_dup20544|chr20:35483670-35484471:-|3.2830570004356416|0.079049127169078|5.38|151.0|38|1|anti-sense L1MEd_dup20544|chr20:35483670-35484471:-|3.2830570004356416|0.079049127169078|5.38|151.0|38|1|anti-sense L1MEd_dup20544|chr20:35483670-35484471:-|3.2830570004356416|0.079049127169078|5.38|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_3 7 589.7838745117188 2 589.781493 1177.54843 NaN NaN NaN NaN NaN NaN NaN 86.957 1 90.748 90.248 91.248 3.7905 0 0 0 0.38639 1 20630 20630 3.9444 0.3479 1 7325 13197 4520 4525 9177 9177 -0.03323873782915143 FFFFSYRY 8 Unmodified _FFFFSYRY_ 0 0 0 REV__HAL1_dup12678|chr9:77745654-77746909:+|2.389651327194059|0.0199893622149542|6.9|151.0|74|1|anti-sense REV__HAL1_dup12678|chr9:77745654-77746909:+|2.389651327194059|0.0199893622149542|6.9|151.0|74|1|anti-sense MSMS UPN47_class_I_Rep_3 4 588.7770385742188 2 588.779285 1175.54402 NaN NaN NaN NaN NaN NaN NaN 44.285 1 47.529 47.029 48.029 3.2441 0 0 0 0.40625 1 9272 9272 2.3027 0.24298 1 + 7326 23347 4521 4526 9178 9178 -0.03673338205817345 FFFGFHWH 8 Unmodified _FFFGFHWH_ 0 0 0 L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|116|3|anti-sense L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|116|3|anti-sense L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|116|3|anti-sense MSMS UPN47_class_I_Rep_3 4 562.7588500976562 2 562.758687 1123.50282 NaN NaN NaN NaN NaN NaN NaN 31.119 1 34.418 33.918 34.918 3.2991 0 0 0 0.40738 1 5261 5261 0.79363 0 1 7327 9529 4522 4527 9179 9179 -0.05399054454619545 FFFGLSVCVME 11 Unmodified _FFFGLSVCVME_ 0 0 0 REV__L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|134|1|anti-sense REV__L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|134|1|anti-sense MSMS UPN47_class_I_Rep_2 3 639.7980346679688 2 639.798503 1277.58245 NaN NaN NaN NaN NaN NaN NaN 55.321 1 58.631 58.131 59.131 3.3102 0 0 0 0.38417 1 12577 12577 2.9952 0.26005 1 + 7328 26814 4523 4528 9180 9180 -0.045235366777887975 FFFGVYRTDS 10 Unmodified _FFFGVYRTDS_ 0 0 0 REV__MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|50|3|anti-sense REV__MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_2 6 619.7954711914062 2 619.795663 1237.57677 NaN NaN NaN NaN NaN NaN NaN 42.963 1 46.724 46.224 47.224 3.7609 0 0 0 0.53105 1 8017 8017 1.6526 0.17072 1 + 7329 31227 4524 4529 9181 9181 -0.032511758736291085 FFFGYVLPW 9 Unmodified _FFFGYVLPW_ 0 0 0 L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|166|2|anti-sense L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|166|2|anti-sense L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|166|2|anti-sense MSMS UPN48_class_I_Rep_3 7 588.301513671875 2 588.299853 1174.58515 NaN NaN NaN NaN NaN NaN NaN 37.219 1 40.882 40.382 41.382 3.663 0 0 0 0.39326 1 6248 6248 2.3027 0.4585 1 7330 15123 4525 4530 9182 9182 0.004844228336651213 FFFHGWCFWCC 11 Unmodified _FFFHGWCFWCC_ 0 0 0 L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|138|3|anti-sense L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|138|3|anti-sense L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|138|3|anti-sense MSMS UPN46_class_I_Rep_3 1 494.8577575683594 3 494.857535 1481.55078 NaN NaN NaN NaN NaN NaN NaN 106.45 1 106.45 105.95 106.95 0 0 0 0 0.38417 1 25960 25960 0 0 1 7331 11260 4526 4531 9183 9183 -0.17073807912743177 FFFHLVSVY 9 Unmodified _FFFHLVSVY_ 0 0 0 REV__L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|18|1|anti-sense REV__L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 579.8049926757812 2 579.80276 1157.59097 NaN NaN NaN NaN NaN NaN NaN 40.034 1 43.539 43.039 44.039 3.5048 0 0 0 0.40038 1 7137 7137 0.6015 0 1 + 7332 26417 4527 4532 9184 9184 0.018475213453484685 FFFIHMREF 9 Unmodified _FFFIHMREF_ 0 0 0 L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|184|3|anti-sense L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|184|3|anti-sense L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|184|3|anti-sense MSMS UPN48_class_I_Rep_3 7 637.77001953125 2 637.312969 1272.61138 NaN NaN NaN NaN NaN NaN NaN 45.018 1 48.655 48.155 49.155 3.6372 0 0 0 0.40038 1 8572 8572 0.6015 0 1 7333 14083 4528 4533 9185 9185 -0.014016312665035002 FFFKKCPFI 9 Unmodified _FFFKKCPFI_ 0 0 0 L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|58|1|anti-sense L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|58|1|anti-sense L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|58|1|anti-sense MSMS UPN47_class_I_Rep_1 2 588.8162231445312 2 588.817356 1175.62016 NaN NaN NaN NaN NaN NaN NaN 60.735 1 64.116 63.616 64.616 3.3815 0 0 0 0.38478 1 14193 14193 4.3292 0.73274 1 7334 13415 4529 4534 9186 9186 0.03937342369977159 FFFKLFKY 8 Unmodified _FFFKLFKY_ 0 0 0 L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|110|2|anti-sense L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|110|2|anti-sense L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|110|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.3051147460938 2 570.318046 1138.62154 NaN NaN NaN NaN NaN NaN NaN 63.472 1 63.472 62.972 63.972 0 0 0 0 0.40604 1 14253 14253 2.5775 0 1 7335 8794 4530 4535 9187 9187 0.057772997303800366 FFFLERLRQLY 11 Unmodified _FFFLERLRQLY_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|80|3|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.2834777832031 3 511.285516 1530.83472 NaN NaN NaN NaN NaN NaN NaN 43.94 1 47.701 47.201 48.201 3.7617 0 0 0 0.38417 1 8318 8318 2.6312 1.1761 1 + 7336 24134 4531 4536 9188 9188 0.09053560719439702 FFFLFFYFRR 10 Unmodified _FFFLFFYFRR_ 0 0 0 REV__L1PB1_dup5660|chr7:37135426-37137542:+|1.321149491843026|0.0163020090099647|6.34|151.0|136|3|anti-sense REV__L1PB1_dup5660|chr7:37135426-37137542:+|1.321149491843026|0.0163020090099647|6.34|151.0|136|3|anti-sense MSMS UPN47_class_I_Rep_2 3 497.2642822265625 3 497.264164 1488.77066 NaN NaN NaN NaN NaN NaN NaN 37.443 1 40.842 40.342 41.342 3.3988 0 0 0 0.53105 1 7141 7141 0.15932 0 1 + 7337 30448 4532 4537 9189 9189 0.04582825353122644 FFFLFVPQT 9 Unmodified _FFFLFVPQT_ 0 0 0 L1M4_dup14754|chr12:57393511-57394006:+|1.490751924286122|0.0276246994129|5.75|151.0|31|2|anti-sense L1M4_dup14754|chr12:57393511-57394006:+|1.490751924286122|0.0276246994129|5.75|151.0|31|2|anti-sense L1M4_dup14754|chr12:57393511-57394006:+|1.490751924286122|0.0276246994129|5.75|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.3058471679688 2 573.305136 1144.59572 NaN NaN NaN NaN NaN NaN NaN 61.993 1 65.159 64.659 65.659 3.1667 0 0 0 0.39326 1 14665 14665 2.3027 0.4585 1 7338 8844 4533 4538 9190 9190 0.029204054880892727 FFFLFWGF 8 Unmodified _FFFLFWGF_ 0 0 0 L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|26|1|anti-sense L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|26|1|anti-sense L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_1 5 555.834716796875 2 555.776014 1109.53747 NaN NaN NaN NaN NaN NaN NaN 53.388 1 56.907 56.407 57.407 3.5192 0 0 0 0.40581 1 11200 11200 2.8892 0 1 7339 11781 4534 4539 9191 9191 -0.012912313665310649 FFFLKKLL 8 Unmodified _FFFLKKLL_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense MSMS UPN47_class_I_Rep_3 4 528.3377075195312 2 528.336239 1054.65792 NaN NaN NaN NaN NaN NaN NaN 102.78 1 106.28 105.78 106.78 3.5057 0 0 0 0.40738 1 25248 25248 0.79363 0 1 + 7340 24495 4535 4540 9192 9192 0.13278176627090943 FFFLMCWVI 9 Unmodified _FFFLMCWVI_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|72|2|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|72|2|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|72|2|anti-sense MSMS UPN48_class_I_Rep_3 7 603.2984008789062 2 603.297942 1204.58133 NaN NaN NaN NaN NaN NaN NaN 70.182 1 73.694 73.194 74.194 3.5128 0 0 0 0.39326 1 16222 16222 2.3027 0 1 7341 11338 4536 4541 9193 9193 -0.012777062560644481 FFFLQNRPV 9 Unmodified _FFFLQNRPV_ 0 0 0 REV__L1MC3_dup3891|chr5:59026788-59027936:-|1.10112589673502|0.0222718247086753|5.63|151.0|82|3|anti-sense REV__L1MC3_dup3891|chr5:59026788-59027936:-|1.10112589673502|0.0222718247086753|5.63|151.0|82|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.316650390625 2 584.319109 1166.62366 NaN NaN NaN NaN NaN NaN NaN 38.033 1 38.033 37.533 38.533 0 0 0 0 0.39518 1 7208 7208 1.8442 0.36234 1 + 7342 26739 4537 4542 9194 9194 0.047017284681714955 FFFMVKYY 8 Unmodified _FFFMVKYY_ 0 0 0 L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|304|2|anti-sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|304|2|anti-sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|304|2|anti-sense MSMS UPN47_class_I_Rep_2 3 572.7908325195312 2 572.780439 1143.54633 NaN NaN NaN NaN NaN NaN NaN 59.149 1 62.431 61.931 62.931 3.2818 0 0 0 0.4032 1 13746 13746 6.3541 1.5981 1 7343 9881 4538 4543 9195 9195 -0.01970625792341707 FFFNEVVVF 9 Unmodified _FFFNEVVVF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.2954711914062 2 574.294768 1146.57498 0.47584 0.00027328 0.1519 8.7238E-05 0.62775 0.00036051 574.2951067129543 77.39 0.21513 81.002 80.938 81.153 3.6116 34 17 2 0 0 0 0.35081 1 18344 18344 10.824 0 1 303330 + 7344 30538 4539 4544 9196 9196 0.007558151084367637 FFFNEVVVF 9 Unmodified _FFFNEVVVF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.3292846679688 2 574.294768 1146.57498 0.51638 0.00029655 -0.5116 -0.00029381 0.0047834 2.7471E-06 574.7959570023964 77.079 0.15874 80.681 80.554 80.713 3.6016 25 11 3 0 0 0 0.11705 1 18151 18151 10.824 0 1 295750 + 7345 30538 4539 4544 9197 9197 0.007558151084367637 FFFNEVVVF 9 Unmodified _FFFNEVVVF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.3292846679688 2 574.294768 1146.57498 0.51602 0.00029635 0.071636 4.114E-05 0.58766 0.00033749 574.2948973926863 76.922 0.077019 80.524 80.493 80.57 3.6016 10 6 2 0 0 0 0.11705 1 18151 18151 10.824 0 1 98970 + 7346 30538 4539 4544 9198 9198 0.007558151084367637 FFFNEVVVF 9 Unmodified _FFFNEVVVF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.2952270507812 2 574.294768 1146.57498 0.51537 0.00029597 0.25452 0.00014617 0.76989 0.00044214 574.7962972437505 77.424 0.2672 81.026 80.941 81.208 3.6016 46 22 3 0 0 0 0.12235 1 18304 18304 4.756 0 1 176380 + 7347 30538 4539 4544 9199 9199 0.007558151084367637 FFFNEVVVF 9 Unmodified _FFFNEVVVF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 574.294768 1146.57498 0.47577 0.00027323 0.15493 8.8978E-05 0.63071 0.00036221 574.294934542105 77.242 0.1261 80.853 80.812 80.938 3.6116 -0.17371 -6.5188E-05 NaN 14.838 26 13 2 NaN NaN NaN NaN 0 NaN NaN 0 285430 + 7348 30538 4539 4544 0.007558151084367637 FFFNEVVVF 9 Unmodified _FFFNEVVVF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|181|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 574.294768 1146.57498 0.51575 0.00029619 -0.065722 -3.7744E-05 0.45003 0.00025845 574.2946437383697 77.186 0.22771 80.788 80.713 80.941 3.6016 -0.12167 -0.00019466 NaN 10.824 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 420300 + 7349 30538 4539 4544 0.007558151084367637 FFFNFYFRFR 10 Unmodified _FFFNFYFRFR_ 0 0 0 L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|26|2|anti-sense;L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|70|2|anti-sense L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|26|2|anti-sense L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|26|2|anti-sense MSMS UPN46_class_I_Rep_3 1 497.62591552734375 3 497.583785 1489.72953 NaN NaN NaN NaN NaN NaN NaN 76.557 1 76.557 76.057 77.057 0 0 0 0 0.53105 1 17865 17865 0.15932 0.064481 1 7350 14034 4540 4545 9200 9200 0.0042506431361744035 FFFNIGIYN 9 Unmodified _FFFNIGIYN_ 0 0 0 L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|93|3|anti-sense L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|93|3|anti-sense L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_3 7 567.7852783203125 2 567.784567 1133.55458 NaN NaN NaN NaN NaN NaN NaN 54.745 1 58.315 57.815 58.815 3.5694 0 0 0 0.38639 1 11539 11539 3.9444 0 1 7351 10912 4541 4546 9201 9201 -0.006853555513998799 FFFNKDTNYI 10 Unmodified _FFFNKDTNYI_ 0 0 0 MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.8788146972656 3 436.880156 1307.61864 0.15073 6.585E-05 -0.81456 -0.00035586 -0.66383 -0.00029001 436.87917678519887 102.09 0.1736 105.88 105.76 105.94 3.7888 37 24 2 0 0 0 0.56433 1 25135 25135 0.77653 0 1 60164 7352 16280 4542 4547 9202 9202 -0.022866201850774814 FFFNKDTNYI 10 Unmodified _FFFNKDTNYI_ 0 0 0 MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.880156 1307.61864 -0.15097 -6.5957E-05 -0.28731 -0.00012552 -0.43828 -0.00019147 436.8793908205773 102.09 0.14992 105.61 105.52 105.67 3.5151 -0.10339 0.00030068 NaN 0.77653 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 73533 7353 16280 4542 4547 -0.022866201850774814 FFFNKDTNYI 10 Unmodified _FFFNKDTNYI_ 0 0 0 MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.880156 1307.61864 -0.32405 -0.00014157 -0.012567 -5.4904E-06 -0.33662 -0.00014706 436.8795607287657 102.3 0.26647 105.79 105.58 105.85 3.4873 0.077955 0.00066077 NaN 0.77653 51 38 2 NaN NaN NaN NaN 0 NaN NaN 0 54347 7354 16280 4542 4547 -0.022866201850774814 FFFNKDTNYI 10 Unmodified _FFFNKDTNYI_ 0 0 0 MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.880156 1307.61864 0.10866 4.7471E-05 -0.65838 -0.00028763 -0.54972 -0.00024016 436.8792928761258 101.96 0.21236 105.68 105.55 105.76 3.7252 -0.027135 -0.00018567 NaN 0.77653 52 30 2 NaN NaN NaN NaN 0 NaN NaN 0 62132 7355 16280 4542 4547 -0.022866201850774814 FFFNKDTNYI 10 Unmodified _FFFNKDTNYI_ 0 0 0 MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MLT1B_dup4306|chr4:38793722-38794164:+|1.169513848129939|0.4130410829896095|1.5|150.0|24|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.880156 1307.61864 0.1404 6.1339E-05 -0.33311 -0.00014553 -0.19271 -8.4191E-05 436.87938893265334 101.94 0.17868 105.71 105.63 105.81 3.776 0.0017456 0.00024065 NaN 0.77653 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 50729 7356 16280 4542 4547 -0.022866201850774814 FFFPLVMGYF 10 Unmodified _FFFPLVMGYF_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|84|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|84|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|84|1|anti-sense MSMS UPN48_class_I_Rep_3 7 634.3132934570312 2 634.314646 1266.61474 NaN NaN NaN NaN NaN NaN NaN 44.502 1 48.139 47.639 48.639 3.6372 0 0 0 0.53105 1 8413 8413 1.8442 0.19162 1 7357 12638 4543 4548 9203 9203 -0.007903812125050536 FFFPPETF 8 Unmodified _FFFPPETF_ 0 0 0 L1MEd_dup20544|chr20:35483670-35484471:-|3.2830570004356416|0.079049127169078|5.38|151.0|38|1|anti-sense L1MEd_dup20544|chr20:35483670-35484471:-|3.2830570004356416|0.079049127169078|5.38|151.0|38|1|anti-sense L1MEd_dup20544|chr20:35483670-35484471:-|3.2830570004356416|0.079049127169078|5.38|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_3 4 516.2470703125 2 516.247286 1030.48002 NaN NaN NaN NaN NaN NaN NaN 39.321 1 42.559 42.059 43.059 3.238 0 0 0 0.40738 1 7755 7755 0.79363 0 1 7358 13197 4544 4549 9204 9204 -0.0340011836276517 FFFPQSPE 8 Unmodified _FFFPQSPE_ 0 0 0 L1MB5_dup1473|chr3:50050158-50051046:-|1.5369782137363623|0.1109141112356465|3.79|151.0|55|3|anti-sense L1MB5_dup1473|chr3:50050158-50051046:-|1.5369782137363623|0.1109141112356465|3.79|151.0|55|3|anti-sense L1MB5_dup1473|chr3:50050158-50051046:-|1.5369782137363623|0.1109141112356465|3.79|151.0|55|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.23468017578125 2 499.734543 997.454533 -0.2496 -0.00012474 -0.74671 -0.00037316 -0.99632 -0.00049789 499.73412333811564 16.475 0.16752 16.475 16.414 16.581 0 25 19 2 0 0 0 0.82752 1 1127 1127 0.79363 0.10326 1 22336 7359 10591 4545 4550 9205 9205 -0.044295928851852295 FFFPRNGPK 9 Unmodified _FFFPRNGPK_ 0 0 0 REV__L1MC5_dup14699|chr20:45040016-45041613:-|1.5823544547130026|0.0130332084108598|6.92|150.0|82|2|anti-sense REV__L1MC5_dup14699|chr20:45040016-45041613:-|1.5823544547130026|0.0130332084108598|6.92|150.0|82|2|anti-sense MSMS UPN47_class_I_Rep_2 3 555.29931640625 2 555.298176 1108.5818 NaN NaN NaN NaN NaN NaN NaN 45.287 1 48.64 48.14 49.14 3.3534 0 0 0 0.39518 1 9528 9528 1.8442 0.51471 1 + 7360 27067 4546 4551 9206 9206 0.0318517277967203 FFFPRWGR 8 Unmodified _FFFPRWGR_ 0 0 0 ENST00000610122.1_1_7:5467202-5467424:-|nuORF ENST00000610122.1_1_7:5467202-5467424:-|nuORF ENST00000610122.1_1_7:5467202-5467424:-|nuORF MSMS UPN46_class_I_Rep_3 1 556.793701171875 2 556.793061 1111.57157 NaN NaN NaN NaN NaN NaN NaN 92.862 1 92.862 92.362 93.362 0 0 0 0 0.40738 1 22488 22488 0.79363 0.10326 1 7361 7702 4547 4552 9207 9207 0.020246098450797945 FFFQIYYLFKK 11 Unmodified _FFFQIYYLFKK_ 0 0 0 MER34D_dup145|chr10:26515875-26516097:-|1.0963330448150204|0.0068322748698943|7.33|149.0|4|2|sense MER34D_dup145|chr10:26515875-26516097:-|1.0963330448150204|0.0068322748698943|7.33|149.0|4|2|sense MER34D_dup145|chr10:26515875-26516097:-|1.0963330448150204|0.0068322748698943|7.33|149.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 515.2822875976562 3 515.283113 1542.82751 NaN NaN NaN NaN NaN NaN NaN 14.818 1 18.187 17.687 18.687 3.3686 0 0 0 0.38417 1 638 638 0.094841 0 1 7362 15926 4548 4553 9208 9208 0.07780828118961836 FFFVSKFKK 9 Unmodified _FFFVSKFKK_ 0 0 0 REV__L1MEc_dup7580|chr6:156977107-156978427:-|2.657135846699484|0.0593839765136451|5.48|151.0|55|2|anti-sense REV__L1MEc_dup7580|chr6:156977107-156978427:-|2.657135846699484|0.0593839765136451|5.48|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_2 6 589.3426513671875 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 95.769 1 99.55 99.05 100.05 3.7804 0 0 0 0.4007 1 22755 22755 0.52476 0 1 + 7363 28479 4549 4554 9209 9209 0.08828373650408139 FFFWCFRW 8 Unmodified _FFFWCFRW_ 0 0 0 REV__L1PA10_dup2999|chr7:92887021-92889845:-|1.840429013878608|0.003555049168435|9.02|150.0|120|2|anti-sense REV__L1PA10_dup2999|chr7:92887021-92889845:-|1.840429013878608|0.003555049168435|9.02|150.0|120|2|anti-sense MSMS UPN48_class_I_Rep_2 6 619.7822265625 2 619.783847 1237.55314 NaN NaN NaN NaN NaN NaN NaN 27.64 1 31.271 30.771 31.771 3.6311 0 0 0 0.40738 1 3690 3690 0.79363 0.19213 1 + 7364 28959 4550 4555 9210 9210 -0.05613268121146575 FFGIVFSSMN 10 Unmodified _FFGIVFSSMN_ 0 0 0 REV__L1MB8_dup868|chr1:212302582-212304256:-|1.5939627631332394|0.0251263289102528|5.99|150.0|92|2|anti-sense REV__L1MB8_dup868|chr1:212302582-212304256:-|1.5939627631332394|0.0251263289102528|5.99|150.0|92|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7726440429688 2 574.775885 1147.53722 -0.3846 -0.00022106 -0.086001 -4.9431E-05 -0.47061 -0.00027049 574.7758093326491 16.731 0.53885 20.092 19.96 20.499 3.3619 85 59 2 0 0 0 0.56309 1 1154 1154 1.6526 0.17072 1 53677 + 7365 26440 4551 4556 9211 9211 -0.03065019148675674 FFGKDCKD 8 Unmodified _FFGKDCKD_ 0 0 0 REV__ZNF664|p.H31Y|1|0.08|ENSG00000179195|chr12:124012235-124012235|C/T|missense_variant REV__ZNF664|p.H31Y|1|0.08|ENSG00000179195|chr12:124012235-124012235|C/T|missense_variant MSMS UPN47_class_I_Rep_2 3 480.21722412109375 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 117.06 1 120.55 120.05 121.05 3.4891 0 0 0 0.40604 1 28597 28597 2.5775 0 1 + 7366 20672 4552 4557 9212 9212 -0.059021232797022094 FFGKLPICFP 10 Unmodified _FFGKLPICFP_ 0 0 0 L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|81|3|anti-sense L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|81|3|anti-sense L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|81|3|anti-sense MSMS UPN47_class_I_Rep_2 3 584.8141479492188 2 584.814813 1167.61507 NaN NaN NaN NaN NaN NaN NaN 63.567 1 66.823 66.323 67.323 3.2558 0 0 0 0.53105 1 15090 15090 3.9444 0.94915 1 7367 13951 4553 4558 9213 9213 0.03797038507354955 FFGLIFVYN 9 Unmodified _FFGLIFVYN_ 0 0 0 REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF MSMS UPN48_class_I_Rep_2 6 560.295654296875 2 560.29731 1118.58007 NaN NaN NaN NaN NaN NaN NaN 35.305 1 38.979 38.479 39.479 3.6735 0 0 0 0.39428 1 5801 5801 2.0598 0.21551 1 + 7368 21485 4554 4559 9214 9214 0.02552118971038908 FFGWQVFYY 9 Unmodified _FFGWQVFYY_ 0 0 0 L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|79|2|anti-sense L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|79|2|anti-sense L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|79|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 628.7945556640625 2 628.792392 1255.57023 0.19729 0.00012405 1.1806 0.00074234 1.3779 0.00086639 628.7930471310835 46.607 0.30508 50.307 50.071 50.376 3.6999 39 22 2 0 0 0 0.40174 1 9881 9881 7.9102 3.0131 1 72069 7369 14134 4555 4560 9215 9215 -0.0473306903431876 FFHIFLVSID 10 Unmodified _FFHIFLVSID_ 0 0 0 REV__L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|46|2|anti-sense REV__L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|46|2|anti-sense MSMS UPN46_class_I_Rep_3 1 619.3331909179688 2 619.334424 1236.6543 NaN NaN NaN NaN NaN NaN NaN 51.631 1 51.631 51.131 52.131 0 0 0 0 0.53105 1 10989 10989 1.6526 0 1 + 7370 25789 4556 4561 9216 9216 0.04543462062542858 FFHIMKRK 8 Unmodified _FFHIMKRK_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MSMS UPN47_class_I_Rep_3 4 553.81689453125 2 553.818221 1105.62189 NaN NaN NaN NaN NaN NaN NaN 69.126 1 72.33 71.83 72.83 3.2044 0 0 0 0.40738 1 16838 16838 0.79363 0.10326 1 7371 3539 4557 4562 9217 9217 0.07330396178576848 FFHKNCIDP 9 Unmodified _FFHKNCIDP_ 0 0 0 ENSG00000188050|ENST00000340112|RNF133 ENSG00000188050|ENST00000340112|RNF133 ENSG00000188050|ENST00000340112|RNF133 MSMS UPN48_class_I_Rep_1 5 560.7662353515625 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 35.074 1 38.589 38.089 39.089 3.5144 0 0 0 0.38639 1 5691 5691 3.9444 0.94915 1 7372 5217 4558 4563 9218 9218 -0.037827700886509774 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 582.7718505859375 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 81.589 1 85.151 84.651 85.651 3.5624 0 0 0 0.16861 1 19459 19459 18.373 6.1324 1 7373 3888 4559 4564 9219 9219 -0.046462497936772706 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 582.7718505859375 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 81.749 1 85.324 84.824 85.824 3.5753 0 0 0 0.013516 1 19503 19503 55.503 33.756 1 7374 3888 4559 4564 9220 9220 -0.046462497936772706 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 583.2728881835938 2 582.771657 1163.52876 0.47695 0.00027796 -0.28247 -0.00016462 0.19448 0.00011334 582.7713441470316 81.664 0.073265 85.321 85.255 85.328 3.6567 11 8 2 0 0 0 0.11355 1 19390 19390 31.268 17.362 1 94928 7375 3888 4559 4564 9221 9221 -0.046462497936772706 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 582.7723388671875 2 582.771657 1163.52876 0.47693 0.00027794 -0.56238 -0.00032774 -0.08545 -4.9798E-05 582.7714930837376 81.818 0.04287 85.475 85.448 85.491 3.6567 6 4 2 0 0 0 0.12096 1 19431 19431 29.841 17.6 1 78819 7376 3888 4559 4564 9222 9222 -0.046462497936772706 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MSMS UPN48_class_I_Rep_2 6 582.770751953125 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 81.771 1 85.428 84.928 85.928 3.6567 0 0 0 0.29913 1 19417 19417 10.8 4.4454 1 7377 3888 4559 4564 9223 9223 -0.046462497936772706 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 582.771728515625 2 582.771657 1163.52876 0.52583 0.00030644 -0.31659 -0.0001845 0.20924 0.00012194 582.7716545890685 81.757 0.23476 85.442 85.286 85.52 3.6851 36 24 2 0 0 0 0.10568 1 19358 19358 32.786 15.673 1 109750 7378 3888 4559 4564 9224 9224 -0.046462497936772706 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MSMS UPN48_class_I_Rep_3 7 582.7716674804688 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 81.605 1 85.29 84.79 85.79 3.685 0 0 0 0.15288 1 19322 19322 19.362 9.9788 1 7379 3888 4559 4564 9225 9225 -0.046462497936772706 FFIEPWYEH 9 Unmodified _FFIEPWYEH_ 0 0 0 REV__L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|118|3|anti-sense REV__L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|118|3|anti-sense MSMS UPN47_class_I_Rep_1 2 634.292724609375 2 634.292756 1266.57096 NaN NaN NaN NaN NaN NaN NaN 65.464 1 68.82 68.32 69.32 3.3557 0 0 0 0.39428 1 15617 15617 2.0598 0.40713 1 + 7380 30011 4560 4565 9226 9226 -0.05166274385283032 FFIFPMWIH 9 Unmodified _FFIFPMWIH_ 0 0 0 REV__L1PA15_dup2988|chr6:37951621-37952597:-|2.4009968757820936|0.0140532171439845|7.42|151.0|41|1|anti-sense REV__L1PA15_dup2988|chr6:37951621-37952597:-|2.4009968757820936|0.0140532171439845|7.42|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_3 7 619.3151245117188 2 619.31498 1236.61541 NaN NaN NaN NaN NaN NaN NaN 78.476 1 82.098 81.598 82.598 3.6216 0 0 0 0.39326 1 18577 18577 2.3027 0.82083 1 + 7381 29238 4561 4566 9227 9227 0.006564582271948893 FFIFPYYI 8 Unmodified _FFIFPYYI_ 0 0 0 REV__L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|43|1|anti-sense REV__L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 555.7545166015625 2 555.288954 1108.56336 NaN NaN NaN NaN NaN NaN NaN 54.344 1 57.53 57.03 58.03 3.1856 0 0 0 0.40581 1 12332 12332 2.8892 0 1 + 7382 24722 4562 4567 9228 9228 0.013416180850754245 FFIHFAQFL 9 Unmodified _FFIHFAQFL_ 0 0 0 REV__L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|57|1|anti-sense REV__L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_1 2 585.2944946289062 2 585.310752 1168.60695 NaN NaN NaN NaN NaN NaN NaN 55.538 1 59.016 58.516 59.516 3.4785 0 0 0 0.38478 1 12614 12614 4.3292 0.38484 1 + 7383 24187 4563 4568 9229 9229 0.029392275822146985 FFIIPHRM 8 Unmodified _FFIIPHRM_ 0 0 0 REV__ENSG00000102195|ENST00000218316|GPR50 REV__ENSG00000102195|ENST00000218316|GPR50 MSMS UPN48_class_I_Rep_2 6 530.79248046875 2 530.791672 1059.56879 NaN NaN NaN NaN NaN NaN NaN 63.222 1 66.696 66.196 67.196 3.4738 0 0 0 0.40738 1 14197 14197 0.79363 0 1 + 7384 18190 4564 4569 9230 9230 0.041390183959265414 FFILTFGFL 9 Unmodified _FFILTFGFL_ 0 0 0 REV__ENSG00000119737|ENST00000394705|GPR75 REV__ENSG00000119737|ENST00000394705|GPR75 MSMS UPN47_class_I_Rep_1 2 552.8135375976562 2 552.810054 1103.60555 NaN NaN NaN NaN NaN NaN NaN 24.356 1 28.086 27.586 28.586 3.7298 0 0 0 0.39326 1 3168 3168 2.3027 1.7012 1 + 7385 18686 4565 4570 9231 9231 0.05789593493454959 FFIQVNVTF 9 Unmodified _FFIQVNVTF_ 0 0 0 REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|253|3|anti-sense REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|253|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 558.3023071289062 2 557.800217 1113.58588 0.51469 0.00028709 -0.79442 -0.00044313 -0.27973 -0.00015603 557.8000894329505 69.631 1.0972 73.086 72.636 73.733 3.4548 336 83 6 0 0 0 0.30034 1 16080 16080 13.906 0.86358 1 1567300 + 7386 24153 4566 4571 9232 9232 0.033632174827062045 FFIQVNVTF 9 Unmodified _FFIQVNVTF_ 0 0 0 REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|253|3|anti-sense REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|253|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.8001708984375 2 557.800217 1113.58588 0.49575 0.00027653 -0.76981 -0.0004294 -0.27405 -0.00015287 557.8001100570709 69.463 1.187 72.984 72.52 73.707 3.5216 290 97 5 0 0 0 0.36392 1 15991 15991 10.074 0.6908 1 1888800 + 7387 24153 4566 4571 9233 9233 0.033632174827062045 FFIQVNVTF 9 Unmodified _FFIQVNVTF_ 0 0 0 REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|253|3|anti-sense REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|253|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.8006591796875 2 557.800217 1113.58588 0.46995 0.00026214 -0.86151 -0.00048055 -0.39156 -0.00021841 557.800105764204 69.35 1.1396 72.863 72.474 73.614 3.5128 294 89 5 0 0 0 0.28552 1 16162 16162 14.838 0.93222 1 1798400 + 7388 24153 4566 4571 9234 9234 0.033632174827062045 FFIWKRLCK 9 Unmodified _FFIWKRLCK_ 0 0 0 L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|106|1|anti-sense L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|106|1|anti-sense L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|106|1|anti-sense MSMS UPN48_class_I_Rep_3 7 620.8557739257812 2 620.854804 1239.69505 NaN NaN NaN NaN NaN NaN NaN 62.548 1 66.058 65.558 66.558 3.5104 0 0 0 0.40038 1 13911 13911 0.6015 0 1 7389 13285 4567 4572 9235 9235 0.08479524901190416 FFKALTLLSK 10 Unmodified _FFKALTLLSK_ 0 0 0 REV__MER65C_dup148|chr3:136695937-136696404:-|1.575352943648848|0.1589542807961422|3.31|151.0|27|3|anti-sense REV__MER65C_dup148|chr3:136695937-136696404:-|1.575352943648848|0.1589542807961422|3.31|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 584.361572265625 2 584.360442 1166.70633 NaN NaN NaN NaN NaN NaN NaN 89.442 1 93.067 92.567 93.567 3.6255 0 0 0 0.53105 1 21479 21479 1.3295 0.13619 1 + 7390 31527 4568 4573 9236 9236 0.1296462547632018 FFKATFLP 8 Unmodified _FFKATFLP_ 0 0 0 REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 MSMS UPN48_class_I_Rep_2 6 485.7731018066406 2 485.773471 969.53239 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.24 117.74 118.74 3.6616 0 0 0 0.40604 1 27391 27391 2.5775 0 1 + 7391 17509 4569 4574 9237 9237 0.04640464770852759 FFKFCLHYR 9 Unmodified _FFKFCLHYR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|3|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|3|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 630.8226928710938 2 630.820961 1259.62737 NaN NaN NaN NaN NaN NaN NaN 59.012 1 59.012 58.512 59.512 0 0 0 0 0.36505 1 13022 13022 7.2892 0 1 7392 9843 4570 4575 9238 9238 0.007940749703948313 FFKFCLHYR 9 Unmodified _FFKFCLHYR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|3|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|3|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 630.8226928710938 2 630.820961 1259.62737 0.62868 0.00039659 2.3598 0.0014886 2.9885 0.0018852 631.3244695367409 59.05 0.085506 59.05 58.983 59.069 0 11 10 2 0 0 0 0.12034 1 13022 13022 7.2892 0 1 162730 7393 9843 4570 4575 9239 9239 0.007940749703948313 FFKGNGWL 8 Unmodified _FFKGNGWL_ 0 0 0 REV__L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|18|2|sense REV__L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 484.75238037109375 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 24.243 1 27.809 27.309 28.309 3.5655 0 0 0 0.40738 1 2648 2648 0.79363 0 1 + 7394 24815 4571 4576 9240 9240 0.006541234512383198 FFKIGVIK 8 Unmodified _FFKIGVIK_ 0 0 0 Charlie7a_dup213|chr2:162358198-162358447:+|1.1649422888884464|0.4054192696112915|1.52|151.0|5|2|sense Charlie7a_dup213|chr2:162358198-162358447:+|1.1649422888884464|0.4054192696112915|1.52|151.0|5|2|sense Charlie7a_dup213|chr2:162358198-162358447:+|1.1649422888884464|0.4054192696112915|1.52|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 476.3064270019531 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 71.087 1 74.299 73.799 74.799 3.2113 0 0 0 0.40738 1 17426 17426 0.79363 0 1 7395 542 4572 4577 9241 9241 0.11805030558912222 FFKINNLN 8 Unmodified _FFKINNLN_ 0 0 0 L1MA4A_dup986|chr3:18294816-18296365:+|3.345593872783793|0.0075847063769257|8.78|149.0|62|2|anti-sense L1MA4A_dup986|chr3:18294816-18296365:+|3.345593872783793|0.0075847063769257|8.78|149.0|62|2|anti-sense L1MA4A_dup986|chr3:18294816-18296365:+|3.345593872783793|0.0075847063769257|8.78|149.0|62|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 505.2768249511719 2 505.276909 1008.53927 0.35201 0.00017786 -0.12613 -6.3732E-05 0.22587 0.00011413 505.2768520333194 62.936 1.1299 66.41 65.848 66.978 3.4738 264 84 4 0 0 0 0.82752 1 13975 13975 4.756 1.1595 1 3989800 7396 9864 4573 4578 9242 9242 0.035337776514325014 FFKKIEIY 8 Unmodified _FFKKIEIY_ 0 0 0 REV__Charlie2a_dup2113|chr22:40303915-40304782:+|1.0143964267998575|0.0406880115868599|4.64|151.0|2|1|sense REV__Charlie2a_dup2113|chr22:40303915-40304782:+|1.0143964267998575|0.0406880115868599|4.64|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 544.3108520507812 2 544.312961 1086.61137 NaN NaN NaN NaN NaN NaN NaN 62.471 1 65.945 65.445 66.445 3.4738 0 0 0 0.4044 1 13964 13964 4.756 0 1 + 7397 17371 4574 4579 9243 9243 0.07152692005138306 FFKLHIRF 8 Unmodified _FFKLHIRF_ 0 0 0 L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|9|2|sense L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|9|2|sense L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 554.6857299804688 2 554.326737 1106.63892 NaN NaN NaN NaN NaN NaN NaN 26.949 1 30.448 29.948 30.948 3.4986 0 0 0 0.40746 1 3973 3973 0.69038 0 1 7398 12789 4575 4580 9244 9244 0.08986640056036777 FFKLLNRVTT 10 Unmodified _FFKLLNRVTT_ 0 0 0 L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|10|1|sense L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|10|1|sense L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 619.8689575195312 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 87.237 1 90.954 90.454 91.454 3.7171 0 0 0 0.53105 1 20754 20754 3.5965 1.9439 1 7399 10787 4576 4581 9245 9245 0.10894242219501393 FFKQGEFCVI 10 Unmodified _FFKQGEFCVI_ 0 0 0 REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|38|2|anti-sense REV__L1M4_dup12565|chr10:896866-897706:+|1.3108200968340862|0.0179285848181748|6.19|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_1 2 406.5386657714844 3 406.538965 1216.59507 NaN NaN NaN NaN NaN NaN NaN 24.714 1 28.464 27.964 28.964 3.7495 0 0 0 0.53105 1 3277 3277 1.9064 0.57673 1 + 7400 24354 4577 4582 9246 9246 -0.004567572232645034 FFKRYYYA 8 Unmodified _FFKRYYYA_ 0 0 0 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS UPN47_class_I_Rep_1 2 579.2927856445312 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 23.63 1 27.36 26.86 27.86 3.7298 0 0 0 0.40738 1 2954 2954 0.79363 0.10326 1 + 7401 21087 4578 4583 9247 9247 -0.0014564931448148855 FFKTLNNCF 9 Unmodified _FFKTLNNCF_ 0 0 0 ENST00000316985.7_1_8:38175222-38175387:-|nuORF ENST00000316985.7_1_8:38175222-38175387:-|nuORF ENST00000316985.7_1_8:38175222-38175387:-|nuORF MSMS UPN48_class_I_Rep_3 7 567.276611328125 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 75.435 1 79.001 78.501 79.501 3.5659 0 0 0 0.39518 1 17720 17720 1.8442 0.36234 1 7402 6139 4579 4584 9248 9248 -0.02341599428837071 FFLAEHCQ 8 Unmodified _FFLAEHCQ_ 0 0 0 REV__ENSG00000137124|ENST00000377698|ALDH1B1 REV__ENSG00000137124|ENST00000377698|ALDH1B1 MSMS UPN48_class_I_Rep_3 7 497.4565124511719 2 497.726195 993.437837 NaN NaN NaN NaN NaN NaN NaN 20.685 1 24.352 23.852 24.852 3.6667 0 0 0 0.40738 1 1810 1810 0.79363 0 1 + 7403 19215 4580 4585 9249 9249 -0.059144170427885 FFLCRRLSK 9 Unmodified _FFLCRRLSK_ 0 0 0 REV__L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|71|2|anti-sense REV__L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|71|2|anti-sense MSMS UPN48_class_I_Rep_2 6 585.8252563476562 2 585.334236 1168.65392 NaN NaN NaN NaN NaN NaN NaN 73.655 1 77.232 76.732 77.732 3.5779 0 0 0 0.38478 1 17304 17304 4.3292 0.73274 1 + 7404 25672 4581 4586 9250 9250 0.07633763861713305 FFLESGLPKV 10 Unmodified _FFLESGLPKV_ 0 0 0 REV__L1MB3_dup13096|chr14:71422335-71426478:-|2.3781066562084856|0.0434148222190023|5.78|151.0|173|1|anti-sense REV__L1MB3_dup13096|chr14:71422335-71426478:-|2.3781066562084856|0.0434148222190023|5.78|151.0|173|1|anti-sense MSMS UPN48_class_I_Rep_1 5 568.8218994140625 2 568.82115 1135.62775 NaN NaN NaN NaN NaN NaN NaN 70.167 1 73.627 73.127 74.127 3.4598 0 0 0 0.53105 1 16332 16332 1.4819 0.28856 1 + 7405 25771 4582 4587 9251 9251 0.06535773171231085 FFLFLTKKT 9 Unmodified _FFLFLTKKT_ 0 0 0 L1PA8A_dup200|chr2:24356917-24357611:+|1.1090133362767851|0.0143589946089203|6.27|151.0|31|2|anti-sense L1PA8A_dup200|chr2:24356917-24357611:+|1.1090133362767851|0.0143589946089203|6.27|151.0|31|2|anti-sense L1PA8A_dup200|chr2:24356917-24357611:+|1.1090133362767851|0.0143589946089203|6.27|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_2 6 572.8427124023438 2 572.841885 1143.66922 NaN NaN NaN NaN NaN NaN NaN 92.696 1 96.459 95.959 96.959 3.7629 0 0 0 0.40038 1 22054 22054 0.6015 0 1 7406 14969 4583 4588 9252 9252 0.1031295393054279 FFLFLTKKT 9 Unmodified _FFLFLTKKT_ 0 0 0 L1PA8A_dup200|chr2:24356917-24357611:+|1.1090133362767851|0.0143589946089203|6.27|151.0|31|2|anti-sense L1PA8A_dup200|chr2:24356917-24357611:+|1.1090133362767851|0.0143589946089203|6.27|151.0|31|2|anti-sense L1PA8A_dup200|chr2:24356917-24357611:+|1.1090133362767851|0.0143589946089203|6.27|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 572.842529296875 2 572.841885 1143.66922 NaN NaN NaN NaN NaN NaN NaN 92.712 1 96.59 96.09 97.09 3.8782 0 0 0 0.40038 1 21978 21978 0.6015 0 1 7407 14969 4583 4588 9253 9253 0.1031295393054279 FFLFWKKK 8 Unmodified _FFLFWKKK_ 0 0 0 REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|67|3|sense REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|67|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 572.8427124023438 2 572.339313 1142.66407 0.48317 0.00027654 1.4798 0.00084694 1.963 0.0011235 572.3400178175078 92.794 0.29258 96.564 96.368 96.661 3.77 52 40 2 0 0 0 0.72333 1 22054 22054 0.79363 0.26887 1 93738 + 7408 32373 4584 4589 9254 9254 0.09844694858611547 FFLFWKKK 8 Unmodified _FFLFWKKK_ 0 0 0 REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|67|3|sense REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|67|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 572.842529296875 2 572.339313 1142.66407 0.47503 0.00027188 1.265 0.00072403 1.7401 0.00099591 572.3399674303869 92.696 0.071648 96.574 96.539 96.61 3.8782 12 9 2 0 0 0 0.72333 1 21978 21978 0.79363 0.10326 1 91547 + 7409 32373 4584 4589 9255 9255 0.09844694858611547 FFLFWKKK 8 Unmodified _FFLFWKKK_ 0 0 0 REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|67|3|sense REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|67|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 572.339313 1142.66407 0.40047 0.00022921 1.7048 0.00097573 2.1053 0.0012049 572.3401849676142 92.846 0.30803 96.469 96.267 96.575 3.624 -0.066354 0.00012843 NaN 0.79363 55 41 2 NaN NaN NaN NaN 0 NaN NaN 0 105380 + 7410 32373 4584 4589 0.09844694858611547 FFLGLWAY 8 Unmodified _FFLGLWAY_ 0 0 0 MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|96|3|anti-sense MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|96|3|anti-sense MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|96|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 508.21148681640625 2 508.765646 1015.51674 -0.1819 -9.2545E-05 -0.25093 -0.00012767 -0.43283 -0.00022021 508.765233187688 39.984 0.63046 43.651 43.445 44.076 3.6668 78 45 2 0 0 0 0.72333 1 7961 7961 2.8892 0 1 109450 7411 16564 4585 4590 9256 9256 0.009601782537856707 FFLHLTLSL 9 Unmodified _FFLHLTLSL_ 0 0 0 REV__Charlie7_dup2008|chr8:97677521-97678602:+|2.299023317419177|0.085834106518252|4.74|151.0|59|2|anti-sense REV__Charlie7_dup2008|chr8:97677521-97678602:+|2.299023317419177|0.085834106518252|4.74|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_1 2 545.8289794921875 2 545.81841 1089.62227 NaN NaN NaN NaN NaN NaN NaN 53.966 1 57.494 56.994 57.994 3.5278 0 0 0 0.38478 1 12135 12135 4.3292 0 1 + 7412 17391 4586 4591 9257 9257 0.08104094379427806 FFLHQDLY 8 Unmodified _FFLHQDLY_ 0 0 0 REV__L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense REV__L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.775146484375 2 541.768917 1081.52328 0.47917 0.0002596 -0.77062 -0.0004175 -0.29144 -0.00015789 541.7665899702919 56.463 1.0163 59.764 59.237 60.253 3.3009 176 70 4 0 0 0 0.82752 1 12994 12994 7.9102 1.187 1 589340 + 7413 26757 4587 4592 9258 9258 -0.014219285854778718 FFLKTTIT 8 Unmodified _FFLKTTIT_ 0 0 0 Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|29|1|anti-sense Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|29|1|anti-sense Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7847900390625 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 36.189 1 39.877 39.377 40.377 3.6877 0 0 0 0.40738 1 6057 6057 0.79363 0.10326 1 7414 495 4588 4593 9259 9259 0.06752430079700389 FFLLIYLFPF 10 Unmodified _FFLLIYLFPF_ 0 0 0 REV__HAL1_dup7388|chr5:70478705-70478965:-|3.017883191619162|0.1455337000373242|4.37|130.0|18|2|anti-sense REV__HAL1_dup7388|chr5:70478705-70478965:-|3.017883191619162|0.1455337000373242|4.37|130.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.5946350097656 3 440.586133 1318.73657 0.04372 1.9262E-05 -6.8573E-05 -3.0212E-08 0.043652 1.9232E-05 440.5861713936501 29.394 0.063448 33.123 33.073 33.137 3.7286 8 6 2 0 0 0 0.56247 1 4110 4110 2.086 0 1 39050 + 7415 23434 4589 4594 9260 9260 0.08994984141486384 FFLPCFILC 9 Unmodified _FFLPCFILC_ 0 0 0 REV__L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|69|1|anti-sense REV__L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|69|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.7760620117188 2 551.776842 1101.53913 NaN NaN NaN NaN NaN NaN NaN 25.845 1 25.845 25.345 26.345 0 0 0 0 0.39326 1 3606 3606 2.3027 1.5091 1 + 7416 27052 4590 4595 9261 9261 -0.007576816644359496 FFLPRSLAL 9 Unmodified _FFLPRSLAL_ 0 0 0 ENST00000566556.1_1_15:75189826-75189910:+|nuORF ENST00000566556.1_1_15:75189826-75189910:+|nuORF ENST00000566556.1_1_15:75189826-75189910:+|nuORF MSMS UPN46_class_I_Rep_3 1 532.3191528320312 2 532.318577 1062.6226 NaN NaN NaN NaN NaN NaN NaN 85.926 1 85.926 85.426 86.426 0 0 0 0 0.39518 1 20526 20526 1.8442 0 1 7417 7492 4591 4596 9262 9262 0.09379514099259723 FFLSAPFVV 9 Unmodified _FFLSAPFVV_ 0 0 0 nc|ENSG808|P60509|ERVPABLB-1 nc|ENSG808|P60509|ERVPABLB-1 nc|ENSG808|P60509|ERVPABLB-1 MULTI-MSMS UPN47_class_I_Rep_3 4 513.7864990234375 2 513.786579 1025.5586 0.31117 0.00015987 -1.1015 -0.00056594 -0.79035 -0.00040607 513.7859475629574 53.514 0.72681 56.709 56.383 57.11 3.1948 74 43 2 0 0 0 0.41259 1 12040 12040 7.2892 0.56607 1 118090 7418 16867 4592 4597 9263 9263 0.04684733942326602 FFLSAPFVV 9 Unmodified _FFLSAPFVV_ 0 0 0 nc|ENSG808|P60509|ERVPABLB-1 nc|ENSG808|P60509|ERVPABLB-1 nc|ENSG808|P60509|ERVPABLB-1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 513.786579 1025.5586 0.26743 0.0001374 -1.9226 -0.00098783 -1.6552 -0.00085042 513.7855345901044 53.352 0.58939 56.871 56.658 57.247 3.5192 0.14766 -0.00061729 NaN 7.2892 59 42 2 NaN NaN NaN NaN 0 NaN NaN 0 176450 7419 16867 4592 4597 0.04684733942326602 FFLSAPFVV 9 Unmodified _FFLSAPFVV_ 0 0 0 nc|ENSG808|P60509|ERVPABLB-1 nc|ENSG808|P60509|ERVPABLB-1 nc|ENSG808|P60509|ERVPABLB-1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 513.786579 1025.5586 0.39781 0.00020439 -1.866 -0.00095871 -1.4682 -0.00075432 513.7855973460224 53.289 0.44698 56.899 56.728 57.175 3.6098 0.1755 -0.00055905 NaN 7.2892 50 29 2 NaN NaN NaN NaN 0 NaN NaN 0 157680 7420 16867 4592 4597 0.04684733942326602 FFLSFHEPGID 11 Unmodified _FFLSFHEPGID_ 0 0 0 REV__L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|55|3|sense REV__L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|55|3|sense MSMS UPN47_class_I_Rep_1 2 436.8789978027344 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 87.934 1 91.59 91.09 92.09 3.6563 0 0 0 0.38417 1 21984 21984 1.2148 0.10508 1 + 7421 27383 4593 4598 9264 9264 -0.022866201851002188 FFLTFAYF 8 Unmodified _FFLTFAYF_ 0 0 0 ENST00000430365.6_1_3:11685112-11685181:-|nuORF ENST00000430365.6_1_3:11685112-11685181:-|nuORF ENST00000430365.6_1_3:11685112-11685181:-|nuORF MSMS UPN48_class_I_Rep_2 6 528.2562866210938 2 528.265479 1054.51641 NaN NaN NaN NaN NaN NaN NaN 73.777 1 77.355 76.855 77.855 3.5779 0 0 0 0.39624 1 17336 17336 9.3474 0 1 7422 6723 4594 4599 9265 9265 -0.008672414660622962 FFLYAGFAAV 10 Unmodified _FFLYAGFAAV_ 0 0 0 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 MULTI-MSMS UPN47_class_I_Rep_3 4 553.2896118164062 2 553.289485 1104.56442 -0.083117 -4.5988E-05 -0.88359 -0.00048888 -0.9667 -0.00053487 553.2889894787614 37.02 1.1083 40.267 39.778 40.886 3.247 131 79 2 0 0 0 0.53188 1 7113 7113 7.9102 3.0131 1 103110 7423 3582 4595 4600 9266 9266 0.0163183245399523 FFLYFYDWMY 10 Unmodified _FFLYFYDWMY_ 0 0 0 REV__L1M1_dup1743|chr3:130881571-130882198:-|1.0827719986038231|0.0107460689304613|6.65|148.0|28|1|anti-sense REV__L1M1_dup1743|chr3:130881571-130882198:-|1.0827719986038231|0.0107460689304613|6.65|148.0|28|1|anti-sense MSMS UPN48_class_I_Rep_1 5 498.88665771484375 3 498.886142 1493.6366 NaN NaN NaN NaN NaN NaN NaN 43.328 1 46.838 46.338 47.338 3.5103 0 0 0 0.53105 1 8120 8120 0.15932 0 1 + 7424 24022 4596 4601 9267 9267 -0.09047621254603655 FFMERWRP 8 Unmodified _FFMERWRP_ 0 0 0 REV__nc|ENSG00000124587|Q13608-2|PEX6 REV__nc|ENSG00000124587|Q13608-2|PEX6 MSMS UPN48_class_I_Rep_2 6 584.7892456054688 2 584.789661 1167.56477 NaN NaN NaN NaN NaN NaN NaN 14.045 1 17.699 17.199 18.199 3.6542 0 0 0 0.40738 1 372 372 0.79363 0.10326 1 + 7425 18813 4597 4602 9268 9268 -0.012310710977999406 FFMFRYDC 8 Unmodified _FFMFRYDC_ 0 0 0 REV__L1MEc_dup17716|chr20:48814757-48815507:+|1.299112537800973|0.0195923977032341|6.05|151.0|42|3|anti-sense REV__L1MEc_dup17716|chr20:48814757-48815507:+|1.299112537800973|0.0195923977032341|6.05|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_1 2 564.2737426757812 2 564.735706 1127.45686 NaN NaN NaN NaN NaN NaN NaN 23.988 1 27.718 27.218 28.218 3.7298 0 0 0 0.40738 1 3060 3060 0.79363 0 1 + 7426 28414 4598 4603 9269 9269 -0.10177203743364771 FFMIEYPRH 9 Unmodified _FFMIEYPRH_ 0 0 0 REV__Tigger18a_dup121|chr2:113187673-113188144:+|1.4196291476966034|0.1478419682100541|3.26|151.0|23|2|anti-sense REV__Tigger18a_dup121|chr2:113187673-113188144:+|1.4196291476966034|0.1478419682100541|3.26|151.0|23|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 620.8048706054688 2 620.302601 1238.59065 0.052682 3.2679E-05 -0.75784 -0.00047009 -0.70516 -0.00043741 620.8039281280705 13.799 0.46098 13.799 13.639 14.1 0 84 52 2 0 0 0 0.50015 1 474 474 0.6015 0.076735 1 66194 + 7427 32614 4599 4604 9270 9270 -0.01910221646176069 FFMKIHML 8 Unmodified _FFMKIHML_ 0 0 0 HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|93|3|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|93|3|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|93|3|sense MSMS UPN48_class_I_Rep_1 5 533.7830810546875 2 533.782459 1065.55036 NaN NaN NaN NaN NaN NaN NaN 44.737 1 48.25 47.75 48.75 3.5132 0 0 0 0.40404 1 8550 8550 5.2307 0 1 7428 8138 4600 4605 9271 9271 0.02021140429701518 FFMKIHML 8 Unmodified _FFMKIHML_ 0 0 0 HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|93|3|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|93|3|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|93|3|sense MSMS UPN48_class_I_Rep_1 5 533.7833862304688 2 533.782459 1065.55036 NaN NaN NaN NaN NaN NaN NaN 45.089 1 48.606 48.106 49.106 3.5162 0 0 0 0.40404 1 8659 8659 5.2307 0 1 7429 8138 4600 4605 9272 9272 0.02021140429701518 FFMLYKYC 8 Unmodified _FFMLYKYC_ 0 0 0 REV__ENSG00000145244|ENST00000273857|CORIN REV__ENSG00000145244|ENST00000273857|CORIN MSMS UPN47_class_I_Rep_3 4 557.7599487304688 2 557.758649 1113.50275 NaN NaN NaN NaN NaN NaN NaN 73.246 1 76.474 75.974 76.974 3.2271 0 0 0 0.40738 1 18077 18077 0.79363 0 1 + 7430 19509 4601 4606 9273 9273 -0.04946558561141501 FFMVWFHA 8 Unmodified _FFMVWFHA_ 0 0 0 REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|222|3|anti-sense REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|222|3|anti-sense MSMS UPN48_class_I_Rep_3 7 542.7181396484375 2 542.757298 1083.50004 NaN NaN NaN NaN NaN NaN NaN 111.61 1 115.27 114.77 115.77 3.6614 0 0 0 0.40738 1 26494 26494 0.79363 0 1 + 7431 27338 4602 4607 9274 9274 -0.03836645903788849 FFNEFEAHA 9 Unmodified _FFNEFEAHA_ 0 0 0 REV__ENSG00000149633|ENST00000279024|KIAA1755 REV__ENSG00000149633|ENST00000279024|KIAA1755 MSMS UPN47_class_I_Rep_1 2 556.2440795898438 2 556.245806 1110.47706 NaN NaN NaN NaN NaN NaN NaN 58.383 1 61.8 61.3 62.3 3.4171 0 0 0 0.37692 1 13477 13477 6.2058 1.4498 1 + 7432 19623 4603 4608 9275 9275 -0.07375993487562482 FFNEFEAHA 9 Unmodified _FFNEFEAHA_ 0 0 0 REV__ENSG00000149633|ENST00000279024|KIAA1755 REV__ENSG00000149633|ENST00000279024|KIAA1755 MSMS UPN47_class_I_Rep_3 4 556.2444458007812 2 556.245806 1110.47706 NaN NaN NaN NaN NaN NaN NaN 58.64 1 61.805 61.305 62.305 3.1658 0 0 0 0.38916 1 13641 13641 3.2813 0.70383 1 + 7433 19623 4603 4608 9276 9276 -0.07375993487562482 FFNFTMYQV 9 Unmodified _FFNFTMYQV_ 0 0 0 REV__ENST00000311117.7_1_7:104754360-104754474:+|nuORF REV__ENST00000311117.7_1_7:104754360-104754474:+|nuORF MSMS UPN47_class_I_Rep_2 3 598.7765502929688 2 598.775885 1195.53722 NaN NaN NaN NaN NaN NaN NaN 67.03 1 70.293 69.793 70.793 3.2636 0 0 0 0.39518 1 16142 16142 1.8442 0 1 + 7434 21707 4604 4609 9277 9277 -0.05273019148694402 FFNMGHLYF 9 Unmodified _FFNMGHLYF_ 0 0 0 REV__L1MA5A_dup3141|chr18:9393965-9394701:+|1.1369857946213018|0.0550873627571956|4.37|151.0|40|2|anti-sense REV__L1MA5A_dup3141|chr18:9393965-9394701:+|1.1369857946213018|0.0550873627571956|4.37|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_1 2 588.2708129882812 2 588.27077 1174.52699 NaN NaN NaN NaN NaN NaN NaN 62.237 1 65.605 65.105 66.105 3.3681 0 0 0 0.40038 1 14649 14649 0.6015 0 1 + 7435 25420 4605 4610 9278 9278 -0.05329582083254536 FFNVLWEP 8 Unmodified _FFNVLWEP_ 0 0 0 REV__nc|ENSG00000070371|P53675-2|CLTCL1 REV__nc|ENSG00000070371|P53675-2|CLTCL1 MSMS UPN47_class_I_Rep_3 4 526.2638549804688 2 526.26601 1050.51747 NaN NaN NaN NaN NaN NaN NaN 24.388 1 27.739 27.239 28.239 3.3509 0 0 0 0.40746 1 3264 3264 0.69038 0 1 + 7436 17796 4606 4611 9279 9279 -0.00577027097165228 FFPENGFSF 9 Unmodified _FFPENGFSF_ 0 0 0 THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|53|1|anti-sense THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|53|1|anti-sense THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 546.24365234375 2 546.245275 1090.476 NaN NaN NaN NaN NaN NaN NaN 43.065 1 46.576 46.076 47.076 3.5103 0 0 0 0.38916 1 8041 8041 3.2813 0.28607 1 7437 32872 4607 4612 9280 9280 -0.06562207856472924 FFPIAVVDLF 10 Unmodified _FFPIAVVDLF_ 0 0 0 REV__L1PA7_dup10889|chr13:49118182-49124497:+|3.4931403871497397|0.0668209825516698|5.71|151.0|355|3|anti-sense REV__L1PA7_dup10889|chr13:49118182-49124497:+|3.4931403871497397|0.0668209825516698|5.71|151.0|355|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 584.7506713867188 2 584.326068 1166.63758 0.52732 0.00030812 -3.922 -0.0022917 -3.3946 -0.0019836 584.8251920839167 64.694 0.049728 68.202 68.159 68.208 3.5083 6 5 2 0 0 0 0.84575 1 14557 14557 3.5965 0.31518 1 38275 + 7438 29989 4608 4613 9281 9281 0.06092961176591416 FFPIITGGF 9 Unmodified _FFPIITGGF_ 0 0 0 REV__L1MB3_dup7056|chr7:139082291-139082846:+|1.0893746535912394|0.0271024449378245|5.33|150.0|24|1|anti-sense REV__L1MB3_dup7056|chr7:139082291-139082846:+|1.0893746535912394|0.0271024449378245|5.33|150.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 499.7702331542969 2 499.770929 997.527304 NaN NaN NaN NaN NaN NaN NaN 61.837 1 65.305 64.805 65.805 3.4678 0 0 0 0.35339 1 13791 13791 7.9102 0 1 + 7439 25910 4609 4614 9282 9282 0.02844160908239246 FFPLNAPF 8 Unmodified _FFPLNAPF_ 0 0 0 L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|166|3|anti-sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|166|3|anti-sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|166|3|anti-sense MSMS UPN47_class_I_Rep_1 2 476.74822998046875 2 476.749996 951.485439 NaN NaN NaN NaN NaN NaN NaN 70.613 1 73.984 73.484 74.484 3.3713 0 0 0 0.40364 1 17169 17169 5.7604 0 1 7440 9064 4610 4615 9283 9283 0.007756052197009922 FFPVRHIT 8 Unmodified _FFPVRHIT_ 0 0 0 Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|26|1|anti-sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|26|1|anti-sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_1 5 508.78656005859375 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 39.778 1 43.283 42.783 43.783 3.5048 0 0 0 0.40738 1 7064 7064 0.79363 0 1 7441 33260 4611 4616 9284 9284 0.053177877509369864 FFPVTKKN 8 Unmodified _FFPVTKKN_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|51|3|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|51|3|sense MSMS UPN46_class_I_Rep_3 1 490.7821350097656 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 118.36 1 118.36 117.86 118.86 0 0 0 0 0.40738 1 29376 29376 0.79363 0 1 + 7442 26315 4612 4617 9285 9285 0.05850965656804874 FFPVTKKN 8 Unmodified _FFPVTKKN_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|51|3|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|51|3|sense MSMS UPN47_class_I_Rep_2 3 490.76751708984375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 32.032 1 35.501 35.001 36.001 3.4691 0 0 0 0.40738 1 5500 5500 0.79363 0 1 + 7443 26315 4612 4617 9286 9286 0.05850965656804874 FFPVTKKN 8 Unmodified _FFPVTKKN_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|51|3|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|51|3|sense MSMS UPN48_class_I_Rep_2 6 490.7815856933594 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.34 1 117 116.5 117.5 3.663 0 0 0 0.40738 1 27045 27045 0.79363 0 1 + 7444 26315 4612 4617 9287 9287 0.05850965656804874 FFPVYPAW 8 Unmodified _FFPVYPAW_ 0 0 0 L1MEc_dup9366|chr8:90034835-90036486:-|1.2827695749693928|0.459072900148561|1.48|151.0|78|1|anti-sense L1MEc_dup9366|chr8:90034835-90036486:-|1.2827695749693928|0.459072900148561|1.48|151.0|78|1|anti-sense L1MEc_dup9366|chr8:90034835-90036486:-|1.2827695749693928|0.459072900148561|1.48|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_3 4 513.7587280273438 2 513.757821 1025.50109 NaN NaN NaN NaN NaN NaN NaN 75.802 1 79.059 78.559 79.559 3.2573 0 0 0 0.40581 1 18824 18824 2.8892 0.31174 1 7445 13155 4613 4618 9288 9288 -0.010641082632446341 FFQCRQNSL 9 Unmodified _FFQCRQNSL_ 0 0 0 Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|57|3|sense Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|57|3|sense Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 572.2742919921875 2 571.774208 1141.53386 0.045131 2.5805E-05 -1.1674 -0.0006675 -1.1223 -0.0006417 571.7734790354465 39.919 0.68892 43.29 42.989 43.677 3.3712 71 45 2 0 0 0 0.47197 1 7961 7961 3.5965 0.31518 1 76455 7446 33061 4614 4619 9289 9289 -0.031242692026808072 FFQHFHFH 8 Unmodified _FFQHFHFH_ 0 0 0 L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|83|2|anti-sense L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|83|2|anti-sense L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|83|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.7664794921875 2 573.767043 1145.51953 NaN NaN NaN NaN NaN NaN NaN 14.658 1 18.174 17.674 18.674 3.5156 0 0 0 0.40798 1 456 456 0 0 1 7447 13361 4615 4620 9290 9290 -0.04740553568649375 FFQQWFIV 8 Unmodified _FFQQWFIV_ 0 0 0 L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|93|2|anti-sense L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|93|2|anti-sense L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|93|2|anti-sense MSMS UPN47_class_I_Rep_2 3 557.7896728515625 2 557.789653 1113.56475 NaN NaN NaN NaN NaN NaN NaN 41.662 1 45.028 44.528 45.528 3.3655 0 0 0 0.4044 1 8417 8417 4.756 0.42677 1 7448 15021 4616 4621 9291 9291 0.01251252173847206 FFRDRSNLI 9 Unmodified _FFRDRSNLI_ 0 0 0 nc|ENSG00000121903|P17040-2|ZSCAN20;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20 nc|ENSG00000121903|P17040-2|ZSCAN20 nc|ENSG00000121903|P17040-2|ZSCAN20 MSMS UPN46_class_I_Rep_3 1 584.06494140625 2 584.317097 1166.61964 NaN NaN NaN NaN NaN NaN NaN 72.712 1 72.712 72.212 73.212 0 0 0 0 0.39518 1 16820 16820 1.8442 1.0506 1 7449 2370 4617 4622 9292 9292 0.042996389744757835 FFRFKDGTDV 10 Unmodified _FFRFKDGTDV_ 0 0 0 REV__nc|ENSG00000115306|Q01082-3|SPTBN1 REV__nc|ENSG00000115306|Q01082-3|SPTBN1 MSMS UPN47_class_I_Rep_2 3 616.3095703125 2 616.308938 1230.60332 NaN NaN NaN NaN NaN NaN NaN 46.408 1 49.76 49.26 50.26 3.3515 0 0 0 0.53105 1 9869 9869 1.4819 0 1 + 7450 18555 4618 4623 9293 9293 -0.0027548698228656576 FFRLGMLL 8 Unmodified _FFRLGMLL_ 0 0 0 ENST00000402983.5_1_1:109203628-109203694:-|nuORF;SVA_B_dup782|chr22:21847028-21848451:+|1.5127646656355436|0.0835579886352941|4.18|151.0|19|2|sense ENST00000402983.5_1_1:109203628-109203694:-|nuORF ENST00000402983.5_1_1:109203628-109203694:-|nuORF MSMS UPN47_class_I_Rep_2 3 498.78973388671875 2 498.788598 995.562644 NaN NaN NaN NaN NaN NaN NaN 62.785 1 66.041 65.541 66.541 3.2558 0 0 0 0.40604 1 14851 14851 2.5775 0 1 7451 6602 4619 4624 9294 9294 0.06468500164419311 FFRPLRWR 8 Unmodified _FFRPLRWR_ 0 0 0 REV__MSTB-int_dup381|chr7:11073089-11074199:-|1.4776127284360114|0.0257778519908254|5.84|150.0|52|2|anti-sense REV__MSTB-int_dup381|chr7:11073089-11074199:-|1.4776127284360114|0.0257778519908254|5.84|150.0|52|2|anti-sense MSMS UPN46_class_I_Rep_3 1 589.3429565429688 2 589.34071 1176.66687 NaN NaN NaN NaN NaN NaN NaN 100.96 1 100.96 100.46 101.46 0 0 0 0 0.40746 1 24626 24626 0.69038 0 1 + 7452 31894 4620 4625 9295 9295 0.08559963036123008 FFRRYLAFG 9 Unmodified _FFRRYLAFG_ 0 0 0 REV__ENSG00000158315|ENST00000372990|RHBDL2 REV__ENSG00000158315|ENST00000372990|RHBDL2 MSMS UPN46_class_I_Rep_3 1 588.8181762695312 2 588.819276 1175.624 NaN NaN NaN NaN NaN NaN NaN 105.97 1 105.97 105.47 106.47 0 0 0 0 0.39428 1 25843 25843 2.0598 0.40713 1 + 7453 19844 4621 4626 9296 9296 0.043211481880234714 FFRSLQSAF 9 Unmodified _FFRSLQSAF_ 0 0 0 REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|293|2|anti-sense REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|293|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 551.7867431640625 2 551.787641 1101.56073 0.46938 0.000259 -0.39734 -0.00021925 0.072043 3.9752E-05 551.7873096962105 35.584 0.64963 39.272 38.907 39.557 3.6877 79 62 2 0 0 0 0.36392 1 5868 5868 10.074 0.6908 1 80038 + 7454 30376 4622 4627 9297 9297 0.014011626801448074 FFSAHRCSTS 10 Unmodified _FFSAHRCSTS_ 0 0 0 REV__L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|162|2|anti-sense REV__L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_3 4 571.75634765625 2 571.756015 1141.49748 NaN NaN NaN NaN NaN NaN NaN 37.793 1 41.035 40.535 41.535 3.2414 0 0 0 0.53105 1 7286 7286 1.1933 0.39971 1 + 7455 24114 4623 4628 9298 9298 -0.06761146099415782 FFSDDSHVSLS 11 Unmodified _FFSDDSHVSLS_ 0 0 0 REV__L1PA10_dup1084|chr3:37146739-37147462:+|1.0493748349420833|0.1223394943049353|3.1|150.0|47|3|anti-sense REV__L1PA10_dup1084|chr3:37146739-37147462:+|1.0493748349420833|0.1223394943049353|3.1|150.0|47|3|anti-sense MSMS UPN47_class_I_Rep_1 2 620.7780151367188 2 620.777667 1239.54078 NaN NaN NaN NaN NaN NaN NaN 47.248 1 50.943 50.443 51.443 3.6951 0 0 0 0.38417 1 10099 10099 2.7352 0 1 + 7456 28927 4624 4629 9299 9299 -0.06940677841134857 FFSDDSHVSLS 11 Unmodified _FFSDDSHVSLS_ 0 0 0 REV__L1PA10_dup1084|chr3:37146739-37147462:+|1.0493748349420833|0.1223394943049353|3.1|150.0|47|3|anti-sense REV__L1PA10_dup1084|chr3:37146739-37147462:+|1.0493748349420833|0.1223394943049353|3.1|150.0|47|3|anti-sense MSMS UPN47_class_I_Rep_2 3 620.77734375 2 620.777667 1239.54078 NaN NaN NaN NaN NaN NaN NaN 47.475 1 50.824 50.324 51.324 3.3492 0 0 0 0.38417 1 10194 10194 2.7352 0 1 + 7457 28927 4624 4629 9300 9300 -0.06940677841134857 FFSDFLHMLI 10 Unmodified _FFSDFLHMLI_ 0 0 0 REV__L1MC5a_dup16070|chr20:1137241-1138070:+|1.83654119549981|0.1200885295662543|3.93|151.0|51|2|anti-sense REV__L1MC5a_dup16070|chr20:1137241-1138070:+|1.83654119549981|0.1200885295662543|3.93|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_3 7 635.3206176757812 2 635.32046 1268.62637 NaN NaN NaN NaN NaN NaN NaN 55.784 1 59.34 58.84 59.84 3.5554 0 0 0 0.53105 1 11859 11859 1.6526 0 1 + 7458 27142 4625 4630 9301 9301 0.0027981581083622586 FFSEMESCTV 10 Unmodified _FFSEMESCTV_ 0 0 0 AluSx_dup89318|chr15:93000001-93000283:+|1.02180297039074|0.4424612627818756|1.21|151.0|11|1|anti-sense AluSx_dup89318|chr15:93000001-93000283:+|1.02180297039074|0.4424612627818756|1.21|151.0|11|1|anti-sense AluSx_dup89318|chr15:93000001-93000283:+|1.02180297039074|0.4424612627818756|1.21|151.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 590.2394409179688 2 590.238475 1178.4624 0.38054 0.00022461 0.18916 0.00011165 0.5697 0.00033626 590.2386097644951 73.279 0.44524 76.666 76.385 76.83 3.3861 49 31 2 0 0 0 0.54822 1 17972 17972 5.7319 0.97584 1 85012 7459 302 4626 4631 9302 9302 -0.1196956974222303 FFSEPADYSCP 11 Unmodified _FFSEPADYSCP_ 0 0 0 L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 631.7520751953125 2 631.755346 1261.49614 0.44762 0.00028279 -2.8213 -0.0017824 -2.3737 -0.0014996 631.7515618037788 57.905 0.80637 61.342 61.028 61.834 3.437 143 50 4 0 0 0 0.33678 1 13363 13363 12.241 3.4953 1 184770 7460 12639 4627 4632 9303 9303 -0.1241482497882771 FFSEPADYSCP 11 Unmodified _FFSEPADYSCP_ 0 0 0 L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 631.755346 1261.49614 0.44762 0.00028279 -2.8213 -0.0017824 -2.3737 -0.0014996 631.7515618037788 57.905 0.80637 61.342 61.028 61.834 3.437 -0.079751 0.0012239 NaN 12.241 143 50 4 NaN NaN NaN NaN 0 NaN NaN 0 184770 7461 12639 4627 4632 -0.1241482497882771 FFSEPADYSCP 11 Unmodified _FFSEPADYSCP_ 0 0 0 L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|67|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 631.755346 1261.49614 0.51935 0.0003281 -4.3334 -0.0027377 -3.8141 -0.0024096 631.7515789468641 58.144 0.81305 61.436 61.085 61.898 3.2912 0.01388 -0.00068667 NaN 12.241 128 52 3 NaN NaN NaN NaN 0 NaN NaN 0 264800 7462 12639 4627 4632 -0.1241482497882771 FFSLVYLY 8 Unmodified _FFSLVYLY_ 0 0 0 Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|25|1|sense Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|25|1|sense Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|25|1|sense MSMS UPN47_class_I_Rep_3 4 526.292724609375 2 526.278586 1050.54262 NaN NaN NaN NaN NaN NaN NaN 52.326 1 55.531 55.031 56.031 3.2055 0 0 0 0.39408 1 11719 11719 10.183 0.83596 1 7463 546 4628 4633 9304 9304 0.01937027705434957 FFSMCTGFFI 10 Unmodified _FFSMCTGFFI_ 0 0 0 L1ME3G_dup5354|chr5:138355955-138356532:-|1.651793721668094|0.0589201069439213|4.81|151.0|32|1|anti-sense L1ME3G_dup5354|chr5:138355955-138356532:-|1.651793721668094|0.0589201069439213|4.81|151.0|32|1|anti-sense L1ME3G_dup5354|chr5:138355955-138356532:-|1.651793721668094|0.0589201069439213|4.81|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_2 6 600.3145751953125 2 600.266838 1198.51912 NaN NaN NaN NaN NaN NaN NaN 34.842 1 38.515 38.015 39.015 3.6735 0 0 0 0.53105 1 5665 5665 1.4819 0 1 7464 12842 4629 4634 9305 9305 -0.07219477395051399 FFSPERYPGV 10 Unmodified _FFSPERYPGV_ 0 0 0 HAL1_dup3547|chr2:176317372-176318222:-|1.4111840854561473|0.2771565384579013|2.35|151.0|38|2|anti-sense HAL1_dup3547|chr2:176317372-176318222:-|1.4111840854561473|0.2771565384579013|2.35|151.0|38|2|anti-sense HAL1_dup3547|chr2:176317372-176318222:-|1.4111840854561473|0.2771565384579013|2.35|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_3 4 599.7980346679688 2 599.798206 1197.58186 NaN NaN NaN NaN NaN NaN NaN 49.025 1 52.259 51.759 52.759 3.2345 0 0 0 0.53105 1 10711 10711 1.6526 1.0511 1 7465 7879 4630 4635 9306 9306 -0.009028720110109134 FFSSLRMVY 9 Unmodified _FFSSLRMVY_ 0 0 0 L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|54|1|anti-sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|54|1|anti-sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_2 3 575.2906494140625 2 575.291702 1148.56885 NaN NaN NaN NaN NaN NaN NaN 64.248 1 67.504 67.004 68.004 3.2556 0 0 0 0.38299 1 15293 15293 4.756 0.81161 1 7466 10461 4631 4636 9307 9307 0.0005097360526633565 FFSSSLRYS 9 Unmodified _FFSSSLRYS_ 0 0 0 L1MB2_dup5837|chr12:920577-921326:+|4.170574721923585|0.1206972197438566|5.11|151.0|26|1|anti-sense L1MB2_dup5837|chr12:920577-921326:+|4.170574721923585|0.1206972197438566|5.11|151.0|26|1|anti-sense L1MB2_dup5837|chr12:920577-921326:+|4.170574721923585|0.1206972197438566|5.11|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_2 3 547.2688598632812 2 547.269281 1092.52401 NaN NaN NaN NaN NaN NaN NaN 24.434 1 27.899 27.399 28.399 3.4655 0 0 0 0.39518 1 3236 3236 1.8442 0.6509 1 7467 10265 4632 4637 9308 9308 -0.018551339364194064 FFSSYGGH 8 Unmodified _FFSSYGGH_ 0 0 0 REV__ENST00000449190.5_2_9:3488840-3490340:-|nuORF REV__ENST00000449190.5_2_9:3488840-3490340:-|nuORF MSMS UPN47_class_I_Rep_3 4 451.19329833984375 2 451.195585 900.376617 NaN NaN NaN NaN NaN NaN NaN 41.977 1 45.216 44.716 45.716 3.2394 0 0 0 0.40738 1 8567 8567 0.79363 0 1 + 7468 22379 4633 4638 9309 9309 -0.07755605750560335 FFSSYWTI 8 Unmodified _FFSSYWTI_ 0 0 0 L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|33|3|anti-sense L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|33|3|anti-sense L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 525.7476806640625 2 525.750193 1049.48583 NaN NaN NaN NaN NaN NaN NaN 51.192 1 51.192 50.692 51.692 0 0 0 0 0.388 1 10865 10865 12.532 1.7076 1 7469 12700 4634 4639 9310 9310 -0.036930198510845 FFSTHPTYFAG 11 Unmodified _FFSTHPTYFAG_ 0 0 0 REV__ENST00000283629.7_1_3:33430534-33430735:-|nuORF REV__ENST00000283629.7_1_3:33430534-33430735:-|nuORF MSMS UPN46_class_I_Rep_3 1 637.7976684570312 2 637.795663 1273.57677 NaN NaN NaN NaN NaN NaN NaN 72.356 1 72.356 71.856 72.856 0 0 0 0 0.38417 1 16720 16720 2.7352 0.43246 1 + 7470 21634 4635 4640 9311 9311 -0.04907175873609049 FFSTMLFQQ 9 Unmodified _FFSTMLFQQ_ 0 0 0 L1M4_dup9512|chr9:21013094-21014103:-|1.16524871003731|0.0846716587568885|3.78|151.0|68|3|anti-sense L1M4_dup9512|chr9:21013094-21014103:-|1.16524871003731|0.0846716587568885|3.78|151.0|68|3|anti-sense L1M4_dup9512|chr9:21013094-21014103:-|1.16524871003731|0.0846716587568885|3.78|151.0|68|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7764282226562 2 574.775885 1147.53722 -0.13023 -7.4851E-05 -0.14426 -8.2919E-05 -0.27449 -0.00015777 574.775821779386 16.585 0.51706 20.107 19.92 20.437 3.5224 92 57 2 0 0 0 0.48846 1 1158 1158 1.8442 0.36234 1 40147 7471 8926 4636 4641 9312 9312 -0.030650191486984113 FFSWCWKM 8 Unmodified _FFSWCWKM_ 0 0 0 REV__ENST00000485324.1_1_X:152959908-152960666:+|nuORF REV__ENST00000485324.1_1_X:152959908-152960666:+|nuORF MSMS UPN47_class_I_Rep_2 3 567.7464599609375 2 567.748616 1133.48268 NaN NaN NaN NaN NaN NaN NaN 34.984 1 38.409 37.909 38.909 3.4253 0 0 0 0.39624 1 6394 6394 9.3474 1.4373 1 + 7472 18956 4637 4642 9313 9313 -0.07872309501112795 FFSYKPMY 8 Unmodified _FFSYKPMY_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.755615234375 2 541.754421 1081.49429 0.41449 0.00022455 0.4508 0.00024422 0.86528 0.00046877 541.7546561336112 74.99 0.12848 78.383 78.303 78.431 3.3937 15 11 2 0 0 0 0.82752 1 18497 18497 5.2307 0.47466 1 44897 + 7473 26497 4638 4643 9314 9314 -0.04319789206101632 FFSYKPMY 8 Unmodified _FFSYKPMY_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 541.754421 1081.49429 0.41449 0.00022455 0.4508 0.00024422 0.86528 0.00046877 541.7546561336112 74.99 0.12848 78.383 78.303 78.431 3.3937 -0.15934 8.3679E-05 NaN 5.2307 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 44897 + 7474 26497 4638 4643 -0.04319789206101632 FFSYKPMY 8 Unmodified _FFSYKPMY_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 541.754421 1081.49429 0.41702 0.00022592 0.24952 0.00013518 0.66654 0.0003611 541.7545796659718 75.355 0.11987 78.668 78.636 78.756 3.3127 0.12515 -0.0001344 NaN 5.2307 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 59438 + 7475 26497 4638 4643 -0.04319789206101632 FFSYKPMY 8 Unmodified _FFSYKPMY_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|165|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 541.754421 1081.49429 0.44124 0.00023905 0.36682 0.00019873 0.80806 0.00043777 541.7546921533462 75.33 0.14005 78.577 78.511 78.651 3.2464 0.034193 -7.3115E-06 NaN 5.2307 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 68247 + 7476 26497 4638 4643 -0.04319789206101632 FFSYTVAY 8 Unmodified _FFSYTVAY_ 0 0 0 L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|77|1|anti-sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|77|1|anti-sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|77|1|anti-sense MSMS UPN47_class_I_Rep_2 3 499.23486328125 2 499.236919 996.459284 NaN NaN NaN NaN NaN NaN NaN 49.628 1 52.971 52.471 53.471 3.3431 0 0 0 0.36148 1 10837 10837 19.439 0 1 7477 11051 4639 4644 9315 9315 -0.03908708742437739 FFTHYFSHY 9 Unmodified _FFTHYFSHY_ 0 0 0 Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|154|2|anti-sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|154|2|anti-sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|154|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 416.8533020019531 3 416.853941 1247.53999 -1.1646 -0.00048548 0.045782 1.9084E-05 -1.1189 -0.0004664 416.85392343941714 37.046 1.5556 40.293 39.823 41.378 3.247 192 114 3 0 0 0 0.48643 1 7195 7195 1.0715 0 1 179300 7478 539 4640 4645 9316 9316 -0.07387427699518412 FFTLFYLTL 9 Unmodified _FFTLFYLTL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|139|3|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|139|3|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|139|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.8185424804688 2 582.820618 1163.62668 NaN NaN NaN NaN NaN NaN NaN 69.921 1 73.125 72.625 73.625 3.2044 0 0 0 0.39518 1 17076 17076 1.8442 0 1 7479 8197 4641 4646 9317 9317 0.05141558802324653 FFTPAGHKKI 10 Unmodified _FFTPAGHKKI_ 0 0 0 REV__HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|6|1|sense REV__HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 573.3284912109375 2 573.326934 1144.63931 NaN NaN NaN NaN NaN NaN NaN 115.96 1 119.59 119.09 120.09 3.6282 0 0 0 0.53105 1 28226 28226 1.6526 0.85899 1 + 7480 23501 4642 4647 9318 9318 0.07278014985240588 FFTRRVRGY 9 Unmodified _FFTRRVRGY_ 0 0 0 HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|222|2|anti-sense;HERV15-int_dup29|chrX:120083366-120087101:-|1.2445459050859102|0.0607388744630503|4.36|150.0|141|2|anti-sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|222|2|anti-sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|222|2|anti-sense MSMS UPN46_class_I_Rep_3 1 601.3322143554688 2 601.333082 1200.65161 NaN NaN NaN NaN NaN NaN NaN 31.143 1 31.143 30.643 31.643 0 0 0 0 0.39518 1 5165 5165 1.8442 0 1 7481 7999 4643 4648 9319 9319 0.05931051448283142 FFTYGAAMSY 10 Unmodified _FFTYGAAMSY_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|1|1|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 579.2531127929688 2 579.252243 1156.48993 NaN NaN NaN NaN NaN NaN NaN 69.543 1 72.819 72.319 73.319 3.2761 0 0 0 0.53105 1 16894 16894 8.7454 1.4562 1 + 7482 25118 4644 4649 9320 9320 -0.08205298419693463 FFTYGAAMSY 10 Unmodified _FFTYGAAMSY_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|1|1|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.2542724609375 2 579.252243 1156.48993 0.44598 0.00025833 2.0289 0.0011752 2.4748 0.0014335 579.7549527910224 69.569 0.52584 72.773 72.536 73.062 3.2044 56 40 2 0 0 0 0.52562 1 16956 16956 8.7454 1.4562 1 88502 + 7483 25118 4644 4649 9321 9321 -0.08205298419693463 FFVFRQLLQL 10 Unmodified _FFVFRQLLQL_ 0 0 0 REV__OldhAT1_dup1110|chr4:57098960-57099240:-|1.3296700010217353|0.3585085889159065|1.89|150.0|7|3|sense REV__OldhAT1_dup1110|chr4:57098960-57099240:-|1.3296700010217353|0.3585085889159065|1.89|150.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 437.5918884277344 3 437.592169 1309.75468 NaN NaN NaN NaN NaN NaN NaN 90.452 1 94.078 93.578 94.578 3.626 0 0 0 0.53105 1 21738 21738 0.69767 0 1 + 7484 32143 4645 4650 9322 9322 0.1121911911625375 FFVHFDVN 8 Unmodified _FFVHFDVN_ 0 0 0 L1MC1_dup8378|chr10:838036-839436:+|3.203870730061562|0.0300321489131844|6.74|150.0|92|3|anti-sense L1MC1_dup8378|chr10:838036-839436:+|3.203870730061562|0.0300321489131844|6.74|150.0|92|3|anti-sense L1MC1_dup8378|chr10:838036-839436:+|3.203870730061562|0.0300321489131844|6.74|150.0|92|3|anti-sense MSMS UPN46_class_I_Rep_3 1 512.7492065429688 2 512.747985 1023.48142 NaN NaN NaN NaN NaN NaN NaN 80.201 1 80.201 79.701 80.701 0 0 0 0 0.40404 1 18881 18881 5.2307 0.47466 1 7485 11196 4646 4651 9323 9323 -0.02938484274000075 FFVIGNMVA 9 Unmodified _FFVIGNMVA_ 0 0 0 REV__L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|158|2|anti-sense REV__L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|158|2|anti-sense MSMS UPN47_class_I_Rep_3 4 499.27685546875 2 499.262413 996.510274 NaN NaN NaN NaN NaN NaN NaN 39.623 1 42.861 42.361 43.361 3.238 0 0 0 0.39518 1 7849 7849 1.8442 0.36234 1 + 7486 29248 4647 4652 9324 9324 0.011879170307906861 FFVKYKNY 8 Unmodified _FFVKYKNY_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS UPN47_class_I_Rep_2 3 554.7972412109375 2 554.794935 1107.57532 NaN NaN NaN NaN NaN NaN NaN 45.6 1 48.953 48.453 49.453 3.3534 0 0 0 0.388 1 9624 9624 12.532 3.1841 1 7487 1537;543 4648 4653 9325 9325 0.025832348282847306 FFVLFLVGRL 10 Unmodified _FFVLFLVGRL_ 0 0 0 L1PREC2_dup7311|chr19:21400798-21401616:-|1.9394941166039696|0.3904762258154093|2.31|151.0|50|2|anti-sense L1PREC2_dup7311|chr19:21400798-21401616:-|1.9394941166039696|0.3904762258154093|2.31|151.0|50|2|anti-sense L1PREC2_dup7311|chr19:21400798-21401616:-|1.9394941166039696|0.3904762258154093|2.31|151.0|50|2|anti-sense MSMS UPN46_class_I_Rep_3 1 404.2489929199219 3 404.249743 1209.7274 NaN NaN NaN NaN NaN NaN NaN 45.781 1 45.781 45.281 46.281 0 0 0 0 0.53105 1 9336 9336 0.77653 0.078866 1 7488 15482 4649 4654 9326 9326 0.13092635575844724 FFVLLVRRK 9 Unmodified _FFVLLVRRK_ 0 0 0 REV__L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|9|1|sense REV__L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 589.3822021484375 2 589.382043 1176.74953 NaN NaN NaN NaN NaN NaN NaN 93.434 1 97.17 96.67 97.67 3.736 0 0 0 0.40038 1 23243 23243 0.6015 0 1 + 7489 24071 4650 4655 9327 9327 0.16822860044271692 FFVLQKFC 8 Unmodified _FFVLQKFC_ 0 0 0 L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|148|3|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|148|3|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|148|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 516.2354736328125 2 516.272781 1030.53101 -0.17968 -9.2761E-05 1.3144 0.00067856 1.1347 0.0005858 516.272985723958 29.569 0.045828 33.326 33.31 33.356 3.7578 4 2 2 0 0 0 0.72333 1 4724 4724 0.79363 0 1 15455 7490 11341 4651 4656 9328 9328 0.016965074104746236 FFVLRRRML 9 Unmodified _FFVLRRRML_ 0 0 0 AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 619.3710327148438 2 619.371153 1236.72775 0.53932 0.00033404 0.56789 0.00035173 1.1072 0.00068578 619.3713875526222 92.94 0.35566 96.661 96.519 96.875 3.7209 62 49 2 0 0 0 0.50088 1 23149 23149 0.52476 0 1 84442 7491 295 4652 4657 9329 9329 0.11885732024074969 FFVLRRRML 9 Unmodified _FFVLRRRML_ 0 0 0 AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 619.3709716796875 2 619.371153 1236.72775 0.42423 0.00026275 0.49538 0.00030682 0.9196 0.00056958 619.371293516416 92.794 0.46245 96.418 96.162 96.625 3.624 81 63 2 0 0 0 0.50088 1 22273 22273 0.52476 0.52476 1 264760 7492 295 4652 4657 9330 9330 0.11885732024074969 FFVMLFSPP 9 Unmodified _FFVMLFSPP_ 0 0 0 REV__ENSG00000123146.20,ADGRE5,chr19,+,I2.1,14381546,14388449|41|53.19|1|intron REV__ENSG00000123146.20,ADGRE5,chr19,+,I2.1,14381546,14388449|41|53.19|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 542.7780151367188 2 542.780439 1083.54633 -0.038762 -2.1039E-05 -1.5323 -0.00083171 -1.5711 -0.00085275 542.7796973597458 27.485 0.52516 31.252 30.981 31.506 3.7662 82 40 3 0 0 0 0.48414 1 4154 4154 2.3027 0.4585 1 118210 + 7493 18774 4653 4658 9331 9331 0.0078937420762486 FFVMVCLY 8 Unmodified _FFVMVCLY_ 0 0 0 HAL1_dup18843|chr15:30549273-30549562:-|1.6966892609835822|0.4062902161832801|2.06|150.0|19|3|anti-sense;HAL1_dup18838|chr15:30416674-30416963:+|2.240645128131589|0.3785974842442231|2.57|151.0|19|3|anti-sense HAL1_dup18843|chr15:30549273-30549562:-|1.6966892609835822|0.4062902161832801|2.06|150.0|19|3|anti-sense HAL1_dup18843|chr15:30549273-30549562:-|1.6966892609835822|0.4062902161832801|2.06|150.0|19|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 511.2841491699219 2 511.247917 1020.48128 0.31323 0.00016014 -3.5074 -0.0017932 -3.1942 -0.001633 511.2459781165543 33.278 0.19606 36.939 36.884 37.08 3.6607 23 21 2 0 0 0 0.72333 1 5256 5256 6.3541 0 1 64888 7494 7844 4654 4659 9332 9332 -0.028139435898651755 FFVPQPKKRQ 10 Unmodified _FFVPQPKKRQ_ 0 0 0 ENST00000403017.2_1_2:135957914-136028945:-|nuORF;nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3 ENST00000403017.2_1_2:135957914-136028945:-|nuORF ENST00000403017.2_1_2:135957914-136028945:-|nuORF MSMS UPN48_class_I_Rep_3 7 637.87353515625 2 637.87204 1273.72953 NaN NaN NaN NaN NaN NaN NaN 101.81 1 105.63 105.13 106.13 3.8153 0 0 0 0.53105 1 24068 24068 1.4819 0.95714 1 7495 2373 4655 4660 9333 9333 0.10361064313656243 FFVSRKRRILI 11 Unmodified _FFVSRKRRILI_ 0 0 0 nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 MSMS UPN48_class_I_Rep_3 7 478.9749450683594 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 102.84 1 106.62 106.12 107.12 3.776 0 0 0 0.38417 1 24301 24301 0.40827 0 1 7496 3966 4656 4661 9334 9334 0.1987296594718373 FFVTLKVSKK 10 Unmodified _FFVTLKVSKK_ 0 0 0 REV__L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|75|3|sense REV__L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|75|3|sense MSMS UPN47_class_I_Rep_1 2 598.8768920898438 2 598.873717 1195.73288 NaN NaN NaN NaN NaN NaN NaN 37.772 1 41.437 40.937 41.937 3.6652 0 0 0 0.53105 1 7206 7206 0.40072 0.40072 1 + 7497 25710 4657 4662 9335 9335 0.14284314367637307 FFVVMPIP 8 Unmodified _FFVVMPIP_ 0 0 0 L1MB2_dup4135|chr8:102350214-102351675:+|2.742031890649405|0.1575293099652451|4.12|151.0|97|3|anti-sense L1MB2_dup4135|chr8:102350214-102351675:+|2.742031890649405|0.1575293099652451|4.12|151.0|97|3|anti-sense L1MB2_dup4135|chr8:102350214-102351675:+|2.742031890649405|0.1575293099652451|4.12|151.0|97|3|anti-sense MSMS UPN48_class_I_Rep_1 5 475.2650451660156 2 475.264425 948.514297 NaN NaN NaN NaN NaN NaN NaN 107.07 1 110.69 110.19 111.19 3.6299 0 0 0 0.40738 1 25794 25794 0.79363 0 1 7498 10246 4658 4663 9336 9336 0.037980065245051264 FFWGILFY 8 Unmodified _FFWGILFY_ 0 0 0 REV__L1MC_dup7605|chr19:11900651-11901063:-|1.250759439663505|0.1249219687263847|3.32|150.0|23|2|anti-sense REV__L1MC_dup7605|chr19:11900651-11901063:-|1.250759439663505|0.1249219687263847|3.32|150.0|23|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7827758789062 2 546.781296 1091.54804 NaN NaN NaN NaN NaN NaN NaN 35.489 1 38.9 38.4 39.4 3.4114 0 0 0 0.40581 1 6549 6549 2.8892 0 1 + 7499 26479 4659 4664 9337 9337 0.005927512878997732 FFWGMLFY 8 Unmodified _FFWGMLFY_ 0 0 0 REV__L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|223|2|anti-sense REV__L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|223|2|anti-sense MSMS UPN47_class_I_Rep_3 4 555.7606811523438 2 555.759507 1109.50446 NaN NaN NaN NaN NaN NaN NaN 70.549 1 73.76 73.26 74.26 3.2113 0 0 0 0.39167 1 17264 17264 11.114 3.8252 1 + 7500 29147 4660 4665 9338 9338 -0.045911814808960116 FFWSGFFY 8 Unmodified _FFWSGFFY_ 0 0 0 L1ME1_dup5904|chr3:58347251-58347799:-|1.02146497811696|0.0061311301817618|7.38|151.0|37|3|anti-sense L1ME1_dup5904|chr3:58347251-58347799:-|1.02146497811696|0.0061311301817618|7.38|151.0|37|3|anti-sense L1ME1_dup5904|chr3:58347251-58347799:-|1.02146497811696|0.0061311301817618|7.38|151.0|37|3|anti-sense MSMS UPN48_class_I_Rep_2 6 550.7486572265625 2 550.747453 1099.48035 NaN NaN NaN NaN NaN NaN NaN 29.545 1 33.177 32.677 33.677 3.6316 0 0 0 0.40738 1 4211 4211 0.79363 0 1 7501 12426 4661 4666 9339 9339 -0.06540698642879761 FFWSMFRA 8 Unmodified _FFWSMFRA_ 0 0 0 REV__HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|346|2|anti-sense REV__HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|346|2|anti-sense MSMS UPN46_class_I_Rep_3 1 546.2613525390625 2 546.260205 1090.50586 NaN NaN NaN NaN NaN NaN NaN 119.34 1 119.34 118.84 119.84 0 0 0 0 0.40738 1 29658 29658 0.79363 0 1 + 7502 23575 4662 4667 9340 9340 -0.03577547392114866 FFWSRSENIRQ 11 Unmodified _FFWSRSENIRQ_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|68|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|68|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 490.9154357910156 3 490.580992 1468.72115 0.19071 9.356E-05 -0.5089 -0.00024966 -0.31819 -0.0001561 490.9151132063511 37.886 0.34002 41.392 41.121 41.461 3.5052 47 33 2 0 0 0 0.66452 1 6480 6480 1.9275 0.27962 1 107200 + 7503 30142 4663 4668 9341 9341 0.005534656063673538 FFYCICLI 8 Unmodified _FFYCICLI_ 0 0 0 L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|120|2|anti-sense L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|120|2|anti-sense L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|120|2|anti-sense MSMS UPN47_class_I_Rep_2 3 511.24688720703125 2 511.247917 1020.48128 NaN NaN NaN NaN NaN NaN NaN 33.057 1 36.512 36.012 37.012 3.4547 0 0 0 0.40581 1 5807 5807 2.8892 0 1 7504 14630 4664 4669 9342 9342 -0.02813943589876544 FFYDYLLF 8 Unmodified _FFYDYLLF_ 0 0 0 REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|140|3|anti-sense REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|140|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.275146484375 2 564.276044 1126.53753 NaN NaN NaN NaN NaN NaN NaN 23.139 1 26.782 26.282 27.282 3.6432 0 0 0 0.40604 1 2472 2472 2.5775 0 1 + 7505 28769 4665 4670 9343 9343 -0.02067276157208653 FFYEMCFF 8 Unmodified _FFYEMCFF_ 0 0 0 L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|51|3|anti-sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|51|3|anti-sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|51|3|anti-sense MSMS UPN46_class_I_Rep_3 1 567.2266235351562 2 567.227182 1132.43981 NaN NaN NaN NaN NaN NaN NaN 46.472 1 46.472 45.972 46.972 0 0 0 0 0.40738 1 9532 9532 0.79363 0 1 7506 10973 4666 4671 9344 9344 -0.12111124349212332 FFYFCLNF 8 Unmodified _FFYFCLNF_ 0 0 0 L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense;L1P4_dup3178|chr15:42860959-42862606:+|1.0979109594689225|0.0157315094795694|6.12|151.0|91|2|anti-sense;L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|257|2|anti-sense;L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|333|3|anti-sense;L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|79|1|anti-sense;L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|84|1|anti-sense;L1P4a_dup427|chr11:87207740-87211125:+|2.2101555993307382|0.0361524618962313|5.93|151.0|162|2|anti-sense;L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|91|1|anti-sense;L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|239|3|anti-sense L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7481689453125 2 550.749139 1099.48372 NaN NaN NaN NaN NaN NaN NaN 66.771 1 66.771 66.271 67.271 0 0 0 0 0.39819 1 15168 15168 8.5933 0 1 7507 14128 4667 4672 9345 9345 -0.06203771860555207 FFYFCLNF 8 Unmodified _FFYFCLNF_ 0 0 0 L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense;L1P4_dup3178|chr15:42860959-42862606:+|1.0979109594689225|0.0157315094795694|6.12|151.0|91|2|anti-sense;L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|257|2|anti-sense;L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|333|3|anti-sense;L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|79|1|anti-sense;L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|84|1|anti-sense;L1P4a_dup427|chr11:87207740-87211125:+|2.2101555993307382|0.0361524618962313|5.93|151.0|162|2|anti-sense;L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|91|1|anti-sense;L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|239|3|anti-sense L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7486572265625 2 550.749139 1099.48372 NaN NaN NaN NaN NaN NaN NaN 66.918 1 66.918 66.418 67.418 0 0 0 0 0.28556 1 15207 15207 34.187 0 1 7508 14128 4667 4672 9346 9346 -0.06203771860555207 FFYFCQQY 8 Unmodified _FFYFCQQY_ 0 0 0 L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|38|2|anti-sense L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|38|2|anti-sense L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|38|2|anti-sense MSMS UPN46_class_I_Rep_3 1 573.2389526367188 2 573.241678 1144.4688 NaN NaN NaN NaN NaN NaN NaN 28.189 1 28.189 27.689 28.689 0 0 0 0 0.40625 1 4293 4293 2.3027 0.24298 1 7509 12243 4668 4673 9347 9347 -0.09765263728536411 FFYFFNALY 9 Unmodified _FFYFFNALY_ 0 0 0 REV__AluJr_dup3774|chr1:112662115-112662326:-|1.8553943615613104|0.1016217694746476|4.19|151.0|10|1|anti-sense REV__AluJr_dup3774|chr1:112662115-112662326:-|1.8553943615613104|0.1016217694746476|4.19|151.0|10|1|anti-sense MSMS UPN48_class_I_Rep_2 6 616.2964477539062 2 616.294768 1230.57498 NaN NaN NaN NaN NaN NaN NaN 25.794 1 29.427 28.927 29.927 3.6332 0 0 0 0.39428 1 3189 3189 2.0598 0.21551 1 + 7510 17038 4669 4674 9348 9348 -0.031081848915619048 FFYFQEQKCVF 11 Unmodified _FFYFQEQKCVF_ 0 0 0 REV__L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|148|3|anti-sense REV__L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|148|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 495.9002990722656 3 495.900563 1484.67986 -0.28665 -0.00014215 -0.4825 -0.00023927 -0.76915 -0.00038142 495.9003837904177 30.233 0.69221 33.978 33.599 34.291 3.7449 96 51 3 0 0 0 0.68024 1 4929 4929 0.50596 0.50596 1 84891 + 7511 24307 4670 4675 9349 9349 -0.043094314773270526 FFYGCLINIL 10 Unmodified _FFYGCLINIL_ 0 0 0 REV__Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|58|1|anti-sense REV__Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_3 7 601.8177490234375 2 601.817553 1201.62055 NaN NaN NaN NaN NaN NaN NaN 41.979 1 45.625 45.125 46.125 3.6458 0 0 0 0.53105 1 7643 7643 1.6526 0 1 + 7512 32677 4671 4676 9350 9350 0.027807172991742846 FFYGCTVFCL 10 Unmodified _FFYGCTVFCL_ 0 0 0 L1PA15_dup3776|chr7:152421027-152421909:+|3.131042820708986|0.0124043075769728|7.98|151.0|52|3|anti-sense L1PA15_dup3776|chr7:152421027-152421909:+|3.131042820708986|0.0124043075769728|7.98|151.0|52|3|anti-sense L1PA15_dup3776|chr7:152421027-152421909:+|3.131042820708986|0.0124043075769728|7.98|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_3 7 600.2669067382812 2 600.266838 1198.51912 NaN NaN NaN NaN NaN NaN NaN 34.543 1 38.215 37.715 38.715 3.6721 0 0 0 0.53105 1 5497 5497 3.9444 0 1 7513 13933 4672 4677 9351 9351 -0.07219477395051399 FFYKIRSY 8 Unmodified _FFYKIRSY_ 0 0 0 REV__L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|164|3|anti-sense REV__L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|164|3|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3351440429688 2 562.300384 1122.58622 NaN NaN NaN NaN NaN NaN NaN 38.212 1 38.212 37.712 38.712 0 0 0 0 0.4044 1 7255 7255 4.756 0.42677 1 + 7514 24890 4673 4678 9352 9352 0.029826372025581804 FFYKPIASY 9 Unmodified _FFYKPIASY_ 0 0 0 REV__L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|12|2|sense REV__L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 568.3090209960938 2 568.294768 1134.57498 NaN NaN NaN NaN NaN NaN NaN 50.763 1 54.287 53.787 54.787 3.5246 0 0 0 0.38639 1 10400 10400 3.9444 1.0552 1 + 7515 28086 4674 4679 9353 9353 0.013078151084073397 FFYMFISH 8 Unmodified _FFYMFISH_ 0 0 0 L1ME1_dup9439|chr5:36928550-36931313:-|1.0529920619011484|0.0224863314424267|5.55|151.0|193|3|anti-sense L1ME1_dup9439|chr5:36928550-36931313:-|1.0529920619011484|0.0224863314424267|5.55|151.0|193|3|anti-sense L1ME1_dup9439|chr5:36928550-36931313:-|1.0529920619011484|0.0224863314424267|5.55|151.0|193|3|anti-sense MSMS UPN47_class_I_Rep_3 4 546.2547607421875 2 546.254588 1090.49462 NaN NaN NaN NaN NaN NaN NaN 40.788 1 44.025 43.525 44.525 3.2372 0 0 0 0.40581 1 8207 8207 2.8892 0 1 7516 12455 4675 4680 9354 9354 -0.04700369486249656 FFYNRHLI 8 Unmodified _FFYNRHLI_ 0 0 0 L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|34|1|anti-sense L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|34|1|anti-sense L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|34|1|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2993774414062 2 555.298176 1108.5818 NaN NaN NaN NaN NaN NaN NaN 83.471 1 86.821 86.321 87.321 3.35 0 0 0 0.40604 1 20935 20935 2.5775 0 1 7517 10433 4676 4681 9355 9355 0.0318517277967203 FFYNWRRI 8 Unmodified _FFYNWRRI_ 0 0 0 REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL MSMS UPN48_class_I_Rep_1 5 601.3179931640625 2 601.3169 1200.61925 NaN NaN NaN NaN NaN NaN NaN 18.321 1 21.853 21.353 22.353 3.5313 0 0 0 0.40738 1 1215 1215 0.79363 0.19213 1 + 7518 20052 4677 4682 9356 9356 0.026962640452666164 FFYSLGLAI 9 Unmodified _FFYSLGLAI_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MSMS UPN47_class_I_Rep_3 4 515.7842407226562 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 62.186 1 65.353 64.853 65.853 3.1667 0 0 0 0.26661 1 14725 14725 12.532 0 1 + 7519 20551 4678 4683 9357 9357 0.039924300797110845 FFYSLGLAI 9 Unmodified _FFYSLGLAI_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MSMS UPN47_class_I_Rep_3 4 515.7839965820312 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 62.368 1 65.535 65.035 66.035 3.1667 0 0 0 0.35339 1 14781 14781 7.9102 0 1 + 7520 20551 4678 4683 9358 9358 0.039924300797110845 FFYSYFKR 8 Unmodified _FFYSYFKR_ 0 0 0 L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|221|2|anti-sense L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|221|2|anti-sense L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|221|2|anti-sense MSMS UPN46_class_I_Rep_3 1 579.6188354492188 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 71.629 1 71.629 71.129 72.129 0 0 0 0 0.40738 1 16512 16512 0.79363 0 1 7521 15149 4679 4684 9359 9359 -0.0014564931448148855 FFYVFPCV 8 Unmodified _FFYVFPCV_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.2468566894531 2 511.246232 1020.47791 -0.19588 -0.00010014 -0.8563 -0.00043778 -1.0522 -0.00053792 511.2461887356525 32.611 0.17601 36.324 36.26 36.436 3.7131 22 15 2 0 0 0 0.82752 1 5652 5652 2.8892 0 1 38601 + 7522 25170 4680 4685 9360 9360 -0.03150870372223835 FFYVFPCV 8 Unmodified _FFYVFPCV_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense MSMS UPN48_class_I_Rep_1 5 511.2464294433594 2 511.246232 1020.47791 NaN NaN NaN NaN NaN NaN NaN 33.187 1 36.707 36.207 37.207 3.5201 0 0 0 0.40581 1 5143 5143 2.8892 0 1 + 7523 25170 4680 4685 9361 9361 -0.03150870372223835 FFYVFPCV 8 Unmodified _FFYVFPCV_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.24566650390625 2 511.246232 1020.47791 0.31449 0.00016078 -0.10141 -5.1848E-05 0.21308 0.00010893 511.24596255045 33.116 0.2771 36.766 36.596 36.873 3.6497 39 30 2 0 0 0 0.82752 2 5177 5177;5188 2.8892 0 1 71024 + 7524 25170 4680 4685 9362;9363 9362 -0.03150870372223835 FFYVFPCV 8 Unmodified _FFYVFPCV_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|295|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 511.246232 1020.47791 -0.27087 -0.00013848 -0.41734 -0.00021336 -0.68821 -0.00035185 511.24636225414145 33.151 0.14647 36.606 36.568 36.715 3.4547 0.040764 -0.00017571 NaN 2.8892 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 39495 + 7525 25170 4680 4685 -0.03150870372223835 FFYVVTLI 8 Unmodified _FFYVVTLI_ 0 0 0 REV__L1M5_dup36402|chr11:9416594-9416894:+|1.279109018948965|0.2506995444162502|2.35|151.0|29|3|anti-sense REV__L1M5_dup36402|chr11:9416594-9416894:+|1.279109018948965|0.2506995444162502|2.35|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.813232421875 2 501.288954 1000.56336 NaN NaN NaN NaN NaN NaN NaN 66.677 1 70.164 69.664 70.664 3.4866 0 0 0 0.40404 1 15252 15252 5.2307 0.47466 1 + 7526 24663 4681 4686 9364 9364 0.06309618085094826 FFYYLYNF 8 Unmodified _FFYYLYNF_ 0 0 0 L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|89|2|anti-sense;L1MC2_dup153|chr1:86866626-86867204:+|1.0374292401802612|0.2362040958859053|2.13|150.0|43|3|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|89|2|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|89|2|anti-sense MSMS UPN47_class_I_Rep_1 2 588.7713012695312 2 588.773668 1175.53278 NaN NaN NaN NaN NaN NaN NaN 38.92 1 42.585 42.085 43.085 3.6652 0 0 0 0.40581 1 7554 7554 2.8892 0 1 7527 11225 4682 4687 9365 9365 -0.04796160299974872 FGADHVIRFP 10 Unmodified _FGADHVIRFP_ 0 0 0 REV__ENSG00000138271|ENST00000260843|GPR87 REV__ENSG00000138271|ENST00000260843|GPR87 MULTI-MSMS UPN48_class_I_Rep_1 5 579.8056030273438 2 579.806365 1157.59818 0.42825 0.0002483 -0.078194 -4.5337E-05 0.35006 0.00020296 579.8062514111505 40.564 1.3246 44.068 43.628 44.953 3.5048 308 117 3 0 0 0 0.54822 1 7526 7526 5.7319 0.43497 1 1012200 + 7528 19269 4683 4688 9366 9366 0.025682539457420717 FGADHVIRFP 10 Unmodified _FGADHVIRFP_ 0 0 0 REV__ENSG00000138271|ENST00000260843|GPR87 REV__ENSG00000138271|ENST00000260843|GPR87 MULTI-MSMS UPN48_class_I_Rep_3 7 579.8063354492188 2 579.806365 1157.59818 0.39936 0.00023155 -0.069832 -4.0489E-05 0.32953 0.00019106 579.8062786662144 40.252 1.4894 43.902 43.478 44.967 3.6509 373 143 4 0 0 0 0.52083 1 7431 7431 9.3831 0.63772 1 921200 + 7529 19269 4683 4688 9367 9367 0.025682539457420717 FGARTGPH 8 Unmodified _FGARTGPH_ 0 0 0 REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 421.717041015625 2 421.717019 841.419485 -0.51084 -0.00021543 0.23712 9.9998E-05 -0.27372 -0.00011543 421.71704137659367 15.443 0.35746 18.94 18.826 19.183 3.4968 50 40 2 0 0 0 0.82752 1 827 827 0.6015 0 1 31282 7530 21969 4684 4689 9368 9368 -0.007567909024714936 FGARTGPH 8 Unmodified _FGARTGPH_ 0 0 0 REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF MSMS UPN47_class_I_Rep_3 4 421.7171325683594 2 421.717019 841.419485 NaN NaN NaN NaN NaN NaN NaN 15.684 1 19.05 18.55 19.55 3.3659 0 0 0 0.40753 1 851 851 0.6015 0 1 7531 21969 4684 4689 9369 9369 -0.007567909024714936 FGDDPSDKF 9 Unmodified _FGDDPSDKF_ 0 0 0 nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG nc|ENSG00000171557|P02679-2|FGG nc|ENSG00000171557|P02679-2|FGG MULTI-MSMS UPN47_class_I_Rep_1 2 514.2218017578125 2 514.221997 1026.42944 -0.15756 -8.102E-05 0.022538 1.159E-05 -0.13502 -6.943E-05 514.2217933034699 38.626 0.47605 42.291 42.117 42.593 3.6652 46 31 2 0 0 0 0.38714 2 7481 7442;7481 8.7454 2.985 1 72580 7532 4529 4685 4690 9370;9371 9371 -0.08271692478433579 FGDDPSDKF 9 Unmodified _FGDDPSDKF_ 0 0 0 nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG nc|ENSG00000171557|P02679-2|FGG nc|ENSG00000171557|P02679-2|FGG MULTI-MSMS UPN47_class_I_Rep_2 3 514.7225952148438 2 514.221997 1026.42944 -0.297 -0.00015272 -0.18666 -9.5985E-05 -0.48366 -0.00024871 514.2219937579238 38.885 0.50726 42.264 42.144 42.651 3.3785 35 29 2 0 0 0 0.22932 2 7574 7574;7635 18.373 2.5259 1 46331 7533 4529 4685 4690 9372;9373 9372 -0.08271692478433579 FGDDPSDKF 9 Unmodified _FGDDPSDKF_ 0 0 0 nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG nc|ENSG00000171557|P02679-2|FGG nc|ENSG00000171557|P02679-2|FGG MSMS UPN47_class_I_Rep_3 4 514.22216796875 2 514.221997 1026.42944 NaN NaN NaN NaN NaN NaN NaN 39.092 1 42.33 41.83 42.83 3.238 0 0 0 0.23173 1 7684 7684 14.405 0.8975 1 7534 4529 4685 4690 9374 9374 -0.08271692478433579 FGDDPSDKFF 10 Unmodified _FGDDPSDKFF_ 0 0 0 nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG nc|ENSG00000171557|P02679-2|FGG nc|ENSG00000171557|P02679-2|FGG MULTI-MSMS UPN47_class_I_Rep_1 2 587.7566528320312 2 587.756204 1173.49785 0.38102 0.00022395 0.11089 6.5178E-05 0.49191 0.00028912 587.7562180482101 57.519 0.49301 60.956 60.796 61.289 3.437 66 40 2 0 0 0 0.55148 1 13179 13179 5.2969 1.3525 1 91958 7535 4529 4686 4691 9375 9375 -0.08195447898583552 FGDDPSDKFF 10 Unmodified _FGDDPSDKFF_ 0 0 0 nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG nc|ENSG00000171557|P02679-2|FGG nc|ENSG00000171557|P02679-2|FGG MULTI-MSMS UPN47_class_I_Rep_2 3 587.7561645507812 2 587.756204 1173.49785 0.51919 0.00030516 -0.2103 -0.0001236 0.30889 0.00018155 587.7561043710385 57.792 0.55139 61.084 60.913 61.464 3.2912 70 45 2 0 0 0 0.51021 1 13329 13329 10.8 10.8 1 93034 7536 4529 4686 4691 9376 9376 -0.08195447898583552 FGDDPSDKFF 10 Unmodified _FGDDPSDKFF_ 0 0 0 nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG nc|ENSG00000171557|P02679-2|FGG nc|ENSG00000171557|P02679-2|FGG MULTI-MSMS UPN47_class_I_Rep_3 4 587.7567749023438 2 587.756204 1173.49785 0.35318 0.00020758 0.12219 7.182E-05 0.47537 0.0002794 587.7562515891478 58.013 0.61646 61.181 60.855 61.471 3.1681 64 42 2 0 0 0 0.53414 1 13449 13449 7.609 2.3783 1 99976 7537 4529 4686 4691 9377 9377 -0.08195447898583552 FGDKFNQEEI 10 Unmodified _FGDKFNQEEI_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|120|3|sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|120|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 613.7888793945312 2 613.788035 1225.56152 0.58384 0.00035835 0.01438 8.8265E-06 0.59822 0.00036718 613.7880118883512 58.202 0.56881 61.7 61.537 62.105 3.4987 45 33 2 0 0 0 0.54148 1 12706 12706 6.6304 1.3997 1 107580 + 7538 23307 4687 4692 9378 9378 -0.04224087461466297 FGEHPQQEY 9 Unmodified _FGEHPQQEY_ 0 0 0 BCL9|p.M1405Hfs*4|1|0.09|ENSG00000116128|chr1:147624885-147624886|-/G|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9 BCL9|p.M1405Hfs*4|1|0.09|ENSG00000116128|chr1:147624885-147624886|-/G|frameshift_variant BCL9|p.M1405Hfs*4|1|0.09|ENSG00000116128|chr1:147624885-147624886|-/G|frameshift_variant MSMS UPN48_class_I_Rep_3 7 567.7471923828125 2 567.74617 1133.47779 NaN NaN NaN NaN NaN NaN NaN 112.12 1 115.78 115.28 116.28 3.6614 0 0 0 0.39428 1 26629 26629 2.0598 1.2661 1 7539 411 4688 4693 9379 9379 -0.08361198838520068 FGFCCHCFWWF 11 Unmodified _FGFCCHCFWWF_ 0 0 0 L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|257|2|anti-sense;L1P1_dup1547|chr8:47500001-47505742:-|2.946594612289576|0.2010030797249618|3.87|151.0|293|3|anti-sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|257|2|anti-sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|257|2|anti-sense MSMS UPN46_class_I_Rep_3 1 494.95330810546875 3 494.857535 1481.55078 NaN NaN NaN NaN NaN NaN NaN 101.69 1 101.69 101.19 102.19 0 0 0 0 0.38417 1 24812 24812 0 0 1 7540 13469 4689 4694 9380 9380 -0.17073807912788652 FGFCCHCFWWF 11 Unmodified _FGFCCHCFWWF_ 0 0 0 L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|257|2|anti-sense;L1P1_dup1547|chr8:47500001-47505742:-|2.946594612289576|0.2010030797249618|3.87|151.0|293|3|anti-sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|257|2|anti-sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|257|2|anti-sense MSMS UPN46_class_I_Rep_3 1 494.8587646484375 3 494.857535 1481.55078 NaN NaN NaN NaN NaN NaN NaN 103.38 1 103.38 102.88 103.88 0 0 0 0 0.38417 1 25229 25229 0 0 1 7541 13469 4689 4694 9381 9381 -0.17073807912788652 FGFIFLTLGLK 11 Unmodified _FGFIFLTLGLK_ 0 0 0 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 MSMS UPN46_class_I_Rep_3 1 628.3740844726562 2 628.376092 1254.73763 NaN NaN NaN NaN NaN NaN NaN 42.225 1 42.225 41.725 42.725 0 0 0 0 0.38417 1 8344 8344 0.35063 0 1 7542 1093 4690 4695 9382 9382 0.12045198510395494 FGFLYLLTF 9 Unmodified _FGFLYLLTF_ 0 0 0 nc|ENSG00000285010|A0A2R8YFL7|OOSP4A nc|ENSG00000285010|A0A2R8YFL7|OOSP4A nc|ENSG00000285010|A0A2R8YFL7|OOSP4A MSMS UPN48_class_I_Rep_2 6 560.8056640625 2 560.807511 1119.60047 NaN NaN NaN NaN NaN NaN NaN 72.759 1 76.323 75.823 76.823 3.5645 0 0 0 0.099968 1 17048 17048 24.674 4.2203 1 7543 16854 4691 4696 9383 9383 0.04545289630846128 FGFSHLEAL 9 Unmodified _FGFSHLEAL_ 0 0 0 ENSG00000167770|ENST00000538426|OTUB1;ENST00000301453.7_1_11:63753886-63764121:+|nuORF ENSG00000167770|ENST00000538426|OTUB1 ENSG00000167770|ENST00000538426|OTUB1 MULTI-MSMS UPN48_class_I_Rep_1 5 510.7613525390625 2 510.761092 1019.50763 0.35317 0.00018039 0.061515 3.142E-05 0.41469 0.00021181 510.76098877108996 63.981 0.49805 67.439 67.056 67.554 3.4578 55 36 2 0 0 0 0.41259 1 14377 14377 7.2892 2.0586 1 104170 7544 4329 4692 4697 9384 9384 -0.0013421510253692759 FGFWRILR 8 Unmodified _FGFWRILR_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.73779296875 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 114.74 1 114.74 114.24 115.24 0 0 0 0 0.40738 1 28368 28368 0.79363 0.10326 1 7545 13729 4693 4698 9385 9385 0.0754546939622287 FGGFYERIK 9 Unmodified _FGGFYERIK_ 0 0 0 REV__nc|ENSG00000138668|Q14103-4|HNRNPD REV__nc|ENSG00000138668|Q14103-4|HNRNPD MULTI-SECPEP UPN48_class_I_Rep_1 5 559.2694091796875 2 558.795466 1115.57638 0.59103 0.00033026 3.3627 0.0018791 3.9538 0.0022093 559.2974680532436 63.538 0.036983 66.995 66.974 67.011 3.4578 4 2 2 0 0 0 0.12182 1 14315 14315 5.2307 0.47466 1 37796 + 7546 19282 4694 4699 9386 9386 0.02321449197165748 FGGVEMGFCH 10 Unmodified _FGGVEMGFCH_ 0 0 0 AluJb_dup108703|chr17:50748324-50748623:-|1.113764223669975|0.3689722034662151|1.59|151.0|18|2|anti-sense AluJb_dup108703|chr17:50748324-50748623:-|1.113764223669975|0.3689722034662151|1.59|151.0|18|2|anti-sense AluJb_dup108703|chr17:50748324-50748623:-|1.113764223669975|0.3689722034662151|1.59|151.0|18|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.2239990234375 2 542.222962 1082.43137 0.35078 0.0001902 0.94232 0.00051095 1.2931 0.00070115 542.2233856797164 79.081 0.24651 79.081 78.942 79.189 0 34 24 2 0 0 0 0.56078 1 18541 18541 3.2813 0.39209 1 73690 7547 13 4695 4700 9387 9387 -0.10654678265791517 FGGWFIWYY 9 Unmodified _FGGWFIWYY_ 0 0 0 L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|15|2|sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|15|2|sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 619.786865234375 2 619.78711 1237.55967 NaN NaN NaN NaN NaN NaN NaN 51.734 1 55.067 54.567 55.567 3.3332 0 0 0 0.39326 1 11485 11485 2.3027 0 1 7548 11579 4696 4701 9388 9388 -0.0496105168874692 FGHMGSFW 8 Unmodified _FGHMGSFW_ 0 0 0 L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|89|2|anti-sense L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|89|2|anti-sense L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|89|2|anti-sense MSMS UPN47_class_I_Rep_1 2 484.70751953125 2 484.707805 967.401058 NaN NaN NaN NaN NaN NaN NaN 17.579 1 21.13 20.63 21.63 3.5504 0 0 0 0.40738 1 1333 1333 0.79363 0 1 7549 15314 4697 4702 9389 9389 -0.08394668868697863 FGHRAPAF 8 Unmodified _FGHRAPAF_ 0 0 0 REV__AluJr_dup18306|chr4:39764425-39764726:-|1.4346169547562082|0.0574704109686823|4.64|151.0|13|1|anti-sense REV__AluJr_dup18306|chr4:39764425-39764726:-|1.4346169547562082|0.0574704109686823|4.64|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_2 6 451.73431396484375 2 451.735212 901.455871 NaN NaN NaN NaN NaN NaN NaN 94.739 1 98.515 98.015 99.015 3.7761 0 0 0 0.40604 1 22523 22523 2.5775 0.27475 1 + 7550 17030 4698 4703 9390 9390 0.001200859942173338 FGIDRPAEL 9 Unmodified _FGIDRPAEL_ 0 0 0 ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1 ENST00000592188.1_1_19:19387459-19391209:-|nuORF ENST00000592188.1_1_19:19387459-19391209:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 509.2716979980469 2 509.271824 1016.5291 0.23164 0.00011797 -0.4503 -0.00022932 -0.21866 -0.00011136 509.27164003921547 57.037 0.52222 57.037 56.701 57.223 0 96 58 3 0 0 0 0.14474 2 12473 12427;12473 26.021 10.766 1 418150 7551 1754 4699 4704 9391;9392 9392 0.02149169926178729 FGIDRPAEL 9 Unmodified _FGIDRPAEL_ 0 0 0 ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1 ENST00000592188.1_1_19:19387459-19391209:-|nuORF ENST00000592188.1_1_19:19387459-19391209:-|nuORF MSMS UPN48_class_I_Rep_1 5 509.2735900878906 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 52.061 1 55.583 55.083 56.083 3.5227 0 0 0 0.27331 1 10796 10796 12.175 2.1008 1 7552 1754 4699 4704 9393 9393 0.02149169926178729 FGIHRQLLF 9 Unmodified _FGIHRQLLF_ 0 0 0 LTR49-int_dup1304|chr10:915851-916413:+|2.2489726524250773|0.0867687756021742|4.7|151.0|10|2|sense LTR49-int_dup1304|chr10:915851-916413:+|2.2489726524250773|0.0867687756021742|4.7|151.0|10|2|sense LTR49-int_dup1304|chr10:915851-916413:+|2.2489726524250773|0.0867687756021742|4.7|151.0|10|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 565.3257446289062 2 565.827101 1129.63965 0.15978 9.0409E-05 -0.16456 -9.3111E-05 -0.0047757 -2.7022E-06 565.826883704057 28.348 0.1366 28.348 28.268 28.405 0 10 7 2 0 0 0 0.12444 1 4333 4333 2.0598 0.57785 1 45467 7553 15657 4700 4705 9394 9394 0.08001434705079191 FGKEEACYD 9 Unmodified _FGKEEACYD_ 0 0 0 REV__L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|13|2|sense REV__L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.2159423828125 2 531.215857 1060.41716 0.06047 3.2123E-05 0.06847 3.6373E-05 0.12894 6.8495E-05 531.215874595735 44.872 0.5562 48.572 48.307 48.863 3.6999 72 37 2 0 0 0 0.37599 1 9380 9380 9.3831 0 1 131550 + 7554 28392 4701 4706 9395 9395 -0.11063052213125957 FGKEEACYD 9 Unmodified _FGKEEACYD_ 0 0 0 REV__L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|13|2|sense REV__L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|13|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 531.215857 1060.41716 0.028882 1.5342E-05 0.2945 0.00015644 0.32338 0.00017178 531.2160524800327 45.131 0.61018 48.486 48.239 48.85 3.3556 -0.0027927 0.00013728 NaN 9.3831 58 35 2 NaN NaN NaN NaN 0 NaN NaN 0 148750 + 7555 28392 4701 4706 -0.11063052213125957 FGKGFYIY 8 Unmodified _FGKGFYIY_ 0 0 0 ENST00000540341.1_1_12:8789534-8790158:+|nuORF ENST00000540341.1_1_12:8789534-8790158:+|nuORF ENST00000540341.1_1_12:8789534-8790158:+|nuORF MSMS UPN47_class_I_Rep_2 3 497.45611572265625 2 497.755278 993.496004 NaN NaN NaN NaN NaN NaN NaN 12.268 1 15.656 15.156 16.156 3.3885 0 0 0 0.40798 1 50 50 0 0 1 7556 7351 4702 4707 9396 9396 -0.0010041212588021153 FGKKKGPNANS 11 Unmodified _FGKKKGPNANS_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN47_class_I_Rep_1 2 574.3143920898438 2 574.314554 1146.61456 -0.14377 -8.2572E-05 -0.58684 -0.00033703 -0.73061 -0.0004196 574.3141571518031 12.739 0.18885 16.189 16.129 16.317 3.45 35 18 3 0 0 0 0.64297 1 145 145 3.8763 1.3778 1 70882 7557 3553 4703 4708 9397 9397 0.04711335111846893 FGKKNKPRPPP 11 Unmodified _FGKKNKPRPPP_ 0 0 0 TRIP10|p.D439Gfs*11|1|0.17|ENSG00000125733|chr19:6749981-6749982|-/G|frameshift_variant;ENSG00000125733|ENST00000313244|TRIP10 TRIP10|p.D439Gfs*11|1|0.17|ENSG00000125733|chr19:6749981-6749982|-/G|frameshift_variant TRIP10|p.D439Gfs*11|1|0.17|ENSG00000125733|chr19:6749981-6749982|-/G|frameshift_variant MSMS UPN48_class_I_Rep_1 5 633.3748168945312 2 633.377489 1264.74043 NaN NaN NaN NaN NaN NaN NaN 64.749 1 68.203 67.703 68.703 3.4541 0 0 0 0.38417 1 14682 14682 2.7352 0.23671 1 7558 2513 4704 4709 9398 9398 0.11864466687939057 FGKKRPGRKH 10 Unmodified _FGKKRPGRKH_ 0 0 0 REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF MSMS UPN47_class_I_Rep_1 2 404.2487487792969 3 404.247507 1209.72069 NaN NaN NaN NaN NaN NaN NaN 52.103 1 55.661 55.161 56.161 3.5585 0 0 0 0.53105 1 11569 11569 0.77653 0 1 + 7559 21772 4705 4710 9399 9399 0.12422135467841144 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS UPN47_class_I_Rep_1 2 491.2793273925781 2 491.279452 980.544351 0.10728 5.2704E-05 0.072845 3.5787E-05 0.18012 8.8491E-05 491.2793668853262 67.073 0.37587 70.434 70.121 70.497 3.3611 77 30 3 0 0 0 0.0053074 2 16106 16067;16106 79.596 39.647 1 345840 7560 2988 4706 4711 9400;9401 9401 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS UPN47_class_I_Rep_1 2 491.2791442871094 2 491.279452 980.544351 0.1074 5.2762E-05 -0.071577 -3.5164E-05 0.03582 1.7598E-05 491.27927525453373 67.262 0.22018 70.623 70.486 70.707 3.3611 49 17 3 0 0 0 0.073198 2 16142 16142;16182 40.239 19.825 1 352700 7561 2988 4706 4711 9402;9403 9402 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS UPN47_class_I_Rep_1 2 491.2792053222656 2 491.279452 980.544351 0.1093 5.3694E-05 -0.17021 -8.3621E-05 -0.060916 -2.9927E-05 491.27928198538245 67.429 0.64272 70.791 70.707 71.349 3.3611 99 49 3 0 0 0 0.033731 3 16219 16219;16260;16301 55.503 27.874 1 242110 7562 2988 4706 4711 9404;9405;9406 9404 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MSMS UPN47_class_I_Rep_1 2 491.2790832519531 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 67.986 1 71.351 70.851 71.851 3.3646 0 0 0 0.3377 1 16384 16384 8.7454 1.4562 1 7563 2988 4706 4711 9407 9407 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS UPN47_class_I_Rep_2 3 491.2792663574219 2 491.279452 980.544351 0.23488 0.00011539 -0.17089 -8.3955E-05 0.063995 3.1439E-05 491.2792606018872 67.446 0.53772 70.709 70.324 70.862 3.2636 91 43 3 0 0 0 0.0063213 5 16279 16170;16180;16200;16239;16279 89.401 45.628 1 425060 7564 2988 4706 4711 9408;9409;9410;9411;9412 9412 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS UPN47_class_I_Rep_2 3 491.27935791015625 2 491.279452 980.544351 0.2399 0.00011786 -0.17071 -8.3865E-05 0.069189 3.3991E-05 491.27928409848204 67.681 0.87258 70.945 70.779 71.651 3.2636 144 75 2 0 0 0 0.073198 7 16351 16314;16351;16388;16427;16465;16502;16548 40.239 18.702 1 371180 7565 2988 4706 4711 9413;9414;9415;9416;9417;9418;9419 9414 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS UPN47_class_I_Rep_3 4 491.27935791015625 2 491.279452 980.544351 0.20096 9.8725E-05 -0.022348 -1.0979E-05 0.17861 8.7746E-05 491.27934549427204 67.566 0.71704 70.757 70.287 71.004 3.1914 110 51 3 0 0 0 0.0094161 4 16331 16252;16294;16331;16371 70.332 35.93 1 235990 7566 2988 4706 4711 9420;9421;9422;9423 9422 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MSMS UPN47_class_I_Rep_3 4 491.27984619140625 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 68.105 1 71.303 70.803 71.803 3.1977 0 0 0 0.16861 1 16528 16528 18.373 7.5492 1 7567 2988 4706 4711 9424 9424 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MSMS UPN47_class_I_Rep_3 4 491.2794189453125 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 68.265 1 71.463 70.963 71.963 3.1977 0 0 0 0.34878 1 16576 16576 8.1555 0.8663 1 7568 2988 4706 4711 9425 9425 0.053300815140460145 FGLARAFSL 9 Unmodified _FGLARAFSL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MSMS UPN47_class_I_Rep_3 4 491.2795104980469 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 68.43 1 71.627 71.127 72.127 3.1977 0 0 0 0.20399 1 16627 16627 16.149 6.0752 1 7569 2988 4706 4711 9426 9426 0.053300815140460145 FGLHPSLAL 9 Unmodified _FGLHPSLAL_ 0 0 0 REV__MamTip2_dup5023|chr12:11826669-11826760:-|1.9630430768586489|0.2179653325278792|3.17|151.0|2|2|sense REV__MamTip2_dup5023|chr12:11826669-11826760:-|1.9630430768586489|0.2179653325278792|3.17|151.0|2|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 477.7740783691406 2 477.774003 953.533452 0.14522 6.9382E-05 -0.087113 -4.162E-05 0.058105 2.7761E-05 477.7738627607337 60.674 0.79741 64.056 63.748 64.545 3.3815 101 73 2 0 0 0 0.42249 1 14136 14136 6.7232 0 1 158630 + 7570 31056 4707 4712 9427 9427 0.054826791397545094 FGLHPSLAL 9 Unmodified _FGLHPSLAL_ 0 0 0 REV__MamTip2_dup5023|chr12:11826669-11826760:-|1.9630430768586489|0.2179653325278792|3.17|151.0|2|2|sense REV__MamTip2_dup5023|chr12:11826669-11826760:-|1.9630430768586489|0.2179653325278792|3.17|151.0|2|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 477.7740783691406 2 477.774003 953.533452 0.00017704 8.4584E-08 -0.12863 -6.1455E-05 -0.12845 -6.137E-05 477.7738722078921 61.249 0.5212 64.414 64.295 64.816 3.1651 61 41 2 0 0 0 0.46869 1 14411 14411 3.9444 0 1 141180 + 7571 31056 4707 4712 9428 9428 0.054826791397545094 FGLSRYVL 8 Unmodified _FGLSRYVL_ 0 0 0 ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK ENSG00000010671|ENST00000308731|BTK ENSG00000010671|ENST00000308731|BTK MULTI-MSMS UPN47_class_I_Rep_1 2 477.7737731933594 2 477.774003 953.533452 0.14522 6.9382E-05 -0.087113 -4.162E-05 0.058105 2.7761E-05 477.7738627607337 60.674 0.79741 64.056 63.748 64.545 3.3815 101 73 2 0 0 0 0.82752 3 14252 14174;14212;14252 38.176 9.094 1 158630 7572 761 4708 4713 9429;9430;9431 9431 0.054826791397545094 FGLSRYVL 8 Unmodified _FGLSRYVL_ 0 0 0 ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK ENSG00000010671|ENST00000308731|BTK ENSG00000010671|ENST00000308731|BTK MULTI-MSMS UPN47_class_I_Rep_2 3 477.77374267578125 2 477.774003 953.533452 0.17484 8.3534E-05 -0.31158 -0.00014886 -0.13674 -6.5329E-05 477.77383404605905 61.038 0.72594 64.303 63.976 64.702 3.2654 90 62 2 0 0 0 0.82752 2 14346 14346;14383 10.8 2.644 1 165740 7573 761 4708 4713 9432;9433 9432 0.054826791397545094 FGLSRYVL 8 Unmodified _FGLSRYVL_ 0 0 0 ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK ENSG00000010671|ENST00000308731|BTK ENSG00000010671|ENST00000308731|BTK MULTI-MSMS UPN47_class_I_Rep_3 4 477.7739562988281 2 477.774003 953.533452 0.00017704 8.4584E-08 -0.12863 -6.1455E-05 -0.12845 -6.137E-05 477.7738722078921 61.249 0.5212 64.414 64.295 64.816 3.1651 61 41 2 0 0 0 0.82752 2 14449 14449;14498 15.248 3.0078 1 141180 7574 761 4708 4713 9434;9435 9434 0.054826791397545094 FGLYRSVI 8 Unmodified _FGLYRSVI_ 0 0 0 Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 477.7734069824219 2 477.774003 953.533452 0.17484 8.3534E-05 -0.31158 -0.00014886 -0.13674 -6.5329E-05 477.77383404605905 61.038 0.72594 64.303 63.976 64.702 3.2654 90 62 2 0 0 0 0.82752 1 14307 14307 8.1555 0 1 165740 7575 33332 4709 4714 9436 9436 0.054826791397545094 FGLYRSVI 8 Unmodified _FGLYRSVI_ 0 0 0 Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense MSMS UPN47_class_I_Rep_3 4 477.7740478515625 2 477.774003 953.533452 NaN NaN NaN NaN NaN NaN NaN 60.916 1 64.081 63.581 64.581 3.1651 0 0 0 0.40367 1 14335 14335 5.7319 0 1 7576 33332 4709 4714 9437 9437 0.054826791397545094 FGLYRSVI 8 Unmodified _FGLYRSVI_ 0 0 0 Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|10|3|sense MSMS UPN47_class_I_Rep_3 4 477.77423095703125 2 477.774003 953.533452 NaN NaN NaN NaN NaN NaN NaN 61.044 1 64.209 63.709 64.709 3.1651 0 0 0 0.39933 1 14373 14373 8.1555 0 1 7577 33332 4709 4714 9438 9438 0.054826791397545094 FGMLWRQR 8 Unmodified _FGMLWRQR_ 0 0 0 PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|24|2|sense PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|24|2|sense PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 547.3325805664062 2 547.289828 1092.5651 NaN NaN NaN NaN NaN NaN NaN 106.57 1 106.57 106.07 107.07 0 0 0 0 0.40746 1 25989 25989 0.69038 0 1 7578 16893 4710 4715 9439 9439 0.02252348622050704 FGNEKIYED 9 Unmodified _FGNEKIYED_ 0 0 0 REV__ENSG00000104856|ENST00000221452|RELB REV__ENSG00000104856|ENST00000221452|RELB MSMS UPN47_class_I_Rep_3 4 557.7576293945312 2 557.756204 1113.49785 NaN NaN NaN NaN NaN NaN NaN 19.539 1 22.89 22.39 23.39 3.3514 0 0 0 0.39598 1 1845 1845 1.6526 0.32309 1 + 7579 18268 4711 4716 9440 9440 -0.05435447898594248 FGNGFESQSF 10 Unmodified _FGNGFESQSF_ 0 0 0 REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 560.2406616210938 2 560.240721 1118.46689 0.36616 0.00020514 0.10291 5.7655E-05 0.46907 0.00026279 560.2406385348982 62.176 0.51126 62.176 61.919 62.43 0 89 50 2 0 0 0 0.38794 3 13872 13839;13872;13910 20.581 7.5385 1 319890 + 7580 26399 4712 4717 9441;9442;9443 9442 -0.08760601212816255 FGNGFESQSF 10 Unmodified _FGNGFESQSF_ 0 0 0 REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.7421264648438 2 560.240721 1118.46689 0.39384 0.00022065 -0.29951 -0.0001678 0.094338 5.2852E-05 560.2405264539278 57.84 0.39766 61.277 61.127 61.525 3.437 33 22 2 0 0 0 0.56189 1 13339 13339 2.4985 0.43874 1 84534 + 7581 26399 4712 4717 9444 9444 -0.08760601212816255 FGNGFESQSF 10 Unmodified _FGNGFESQSF_ 0 0 0 REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.240478515625 2 560.240721 1118.46689 0.51947 0.00029103 0.041599 2.3305E-05 0.56107 0.00031433 560.2407022034192 58.194 0.55886 61.476 61.128 61.687 3.2818 49 35 2 0 0 0 0.53414 2 13422 13416;13422 7.609 3.6646 1 83486 + 7582 26399 4712 4717 9445;9446 9446 -0.08760601212816255 FGNGFESQSF 10 Unmodified _FGNGFESQSF_ 0 0 0 REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.2404174804688 2 560.240721 1118.46689 0.3417 0.00019143 -0.1678 -9.401E-05 0.1739 9.7424E-05 560.2405578939821 58.15 0.57963 61.317 61.104 61.683 3.1671 55 34 2 0 0 0 0.55148 2 13532 13483;13532 5.2969 1.3525 1 107760 + 7583 26399 4712 4717 9447;9448 9448 -0.08760601212816255 FGNGFESQSF 10 Unmodified _FGNGFESQSF_ 0 0 0 REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense REV__L1MB8_dup2651|chr3:32443399-32444746:-|2.3312638684048173|0.1980485257684954|3.56|150.0|10|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 560.240721 1118.46689 0.3417 0.00019143 -0.1678 -9.401E-05 0.1739 9.7424E-05 560.2405578939821 58.15 0.57963 61.317 61.104 61.683 3.1671 -0.039437 1.1355E-05 NaN 7.609 55 34 2 NaN NaN NaN NaN 0 NaN NaN 0 107760 + 7584 26399 4712 4717 -0.08760601212816255 FGNGIRRL 8 Unmodified _FGNGIRRL_ 0 0 0 ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENST00000512983.5_1_4:156617950-156632415:+|nuORF ENSG00000164116|ENST00000506455|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 MSMS UPN47_class_I_Rep_1 2 466.77630615234375 2 466.774868 931.535184 NaN NaN NaN NaN NaN NaN NaN 56.911 1 60.368 59.868 60.868 3.4572 0 0 0 0.4044 1 13034 13034 4.756 0.81161 1 7585 4084 4713 4718 9449 9449 0.06667732948358207 FGPPVHGVIY 10 Unmodified _FGPPVHGVIY_ 0 0 0 REV__nc|ENSG00000130768|Q92485-2|SMPDL3B REV__nc|ENSG00000130768|Q92485-2|SMPDL3B MSMS UPN47_class_I_Rep_1 2 543.293212890625 2 543.292559 1084.57057 NaN NaN NaN NaN NaN NaN NaN 35.899 1 39.575 39.075 40.075 3.6762 0 0 0 0.53105 1 6637 6637 1.8442 0.19162 1 + 7586 18952 4714 4719 9450 9450 0.031663506855238666 FGREVLFI 8 Unmodified _FGREVLFI_ 0 0 0 REV__AluSz_dup93687|chr19:16085787-16086085:+|1.3513547856132109|0.1855304477778369|2.86|151.0|13|1|anti-sense REV__AluSz_dup93687|chr19:16085787-16086085:+|1.3513547856132109|0.1855304477778369|2.86|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7810974121094 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 26.808 1 30.574 30.074 31.074 3.7662 0 0 0 0.40738 1 3891 3891 0.79363 0 1 + 7587 17217 4715 4720 9451 9451 0.05850965656793505 FGREVLFI 8 Unmodified _FGREVLFI_ 0 0 0 REV__AluSz_dup93687|chr19:16085787-16086085:+|1.3513547856132109|0.1855304477778369|2.86|151.0|13|1|anti-sense REV__AluSz_dup93687|chr19:16085787-16086085:+|1.3513547856132109|0.1855304477778369|2.86|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_1 5 490.78143310546875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 117.21 1 120.83 120.33 121.33 3.6254 0 0 0 0.40738 1 28560 28560 0.79363 0 1 + 7588 17217 4715 4720 9452 9452 0.05850965656793505 FGRKNVLFV 9 Unmodified _FGRKNVLFV_ 0 0 0 ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5 ENST00000461013.5_1_5:131719758-131729961:+|nuORF ENST00000461013.5_1_5:131719758-131729961:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.321651 1078.62875 0.037245 2.0124E-05 0.21811 0.00011785 0.25535 0.00013797 540.3216779660612 26.952 0.34513 26.952 26.932 27.277 0 53 28 3 0 0 0 0.46434 1 4007 4007 4.3292 1.7518 1 1352900 7589 5365 4716 4721 9453 9453 0.09258032330808419 FGRKTTQAGI 10 Unmodified _FGRKTTQAGI_ 0 0 0 L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|114|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|114|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|114|3|anti-sense MSMS UPN47_class_I_Rep_1 2 539.7927856445312 2 539.803823 1077.59309 NaN NaN NaN NaN NaN NaN NaN 72.43 1 75.81 75.31 76.31 3.3799 0 0 0 0.53105 1 17723 17723 7.609 2.3121 1 7590 11290 4717 4722 9454 9454 0.057399500831252226 FGRKTTQAGI 10 Unmodified _FGRKTTQAGI_ 0 0 0 L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|114|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|114|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|114|3|anti-sense MSMS UPN47_class_I_Rep_3 4 539.7924194335938 2 539.803823 1077.59309 NaN NaN NaN NaN NaN NaN NaN 72.362 1 75.589 75.089 76.089 3.2271 0 0 0 0.53105 1 17810 17810 13.042 1.4022 1 7591 11290 4717 4722 9455 9455 0.057399500831252226 FGRLRRVNHK 10 Unmodified _FGRLRRVNHK_ 0 0 0 AluSx3_dup30878|chr20:36579181-36579470:-|1.1889094864917018|0.0436782369070038|4.77|151.0|5|2|sense AluSx3_dup30878|chr20:36579181-36579470:-|1.1889094864917018|0.0436782369070038|4.77|151.0|5|2|sense AluSx3_dup30878|chr20:36579181-36579470:-|1.1889094864917018|0.0436782369070038|4.77|151.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 641.8816528320312 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 89.795 1 93.252 92.752 93.752 3.4571 0 0 0 0.53105 1 22302 22302 1.4819 0 1 7592 333 4718 4723 9456 9456 0.1234492287080684 FGSFTSYKNN 10 Unmodified _FGSFTSYKNN_ 0 0 0 REV__nc|ENSG00000165985|Q5VWW1-3|C1QL3 REV__nc|ENSG00000165985|Q5VWW1-3|C1QL3 MULTI-MSMS UPN47_class_I_Rep_1 2 582.7702026367188 2 582.769645 1163.52474 0.38224 0.00022276 0.11428 6.6596E-05 0.49651 0.00028935 582.769726377438 75.224 0.30529 78.628 78.429 78.735 3.4034 33 25 2 0 0 0 0.47804 1 18577 18577 13.615 4.2317 1 68047 + 7593 19477 4719 4724 9457 9457 -0.05048339287350245 FGSFTSYKNN 10 Unmodified _FGSFTSYKNN_ 0 0 0 REV__nc|ENSG00000165985|Q5VWW1-3|C1QL3 REV__nc|ENSG00000165985|Q5VWW1-3|C1QL3 MSMS UPN47_class_I_Rep_2 3 582.769775390625 2 582.769645 1163.52474 NaN NaN NaN NaN NaN NaN NaN 75.49 1 78.811 78.311 79.311 3.3216 0 0 0 0.53105 1 18643 18643 15.248 0.41021 1 + 7594 19477 4719 4724 9458 9458 -0.05048339287350245 FGSIVDYDIP 10 Unmodified _FGSIVDYDIP_ 0 0 0 REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 563.2763671875 2 563.276772 1124.53899 0.43039 0.00024243 -0.046945 -2.6443E-05 0.38345 0.00021599 563.2766864694687 79.622 0.41323 79.622 79.378 79.791 0 107 39 4 0 0 0 0.36464 1 18656 18656 22.736 0 1 1486500 + 7595 24581 4720 4725 9459 9459 -0.018296868591050952 FGSIVDYDIP 10 Unmodified _FGSIVDYDIP_ 0 0 0 REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 563.2772216796875 2 563.276772 1124.53899 0.43129 0.00024294 -0.0048884 -2.7535E-06 0.42641 0.00024018 563.2766729413797 79.837 0.42599 79.837 79.791 80.217 0 94 41 3 0 0 0 0.31818 2 18835 18802;18835 27.629 4.8925 1 904270 + 7596 24581 4720 4725 9460;9461 9461 -0.018296868591050952 FGSIVDYDIP 10 Unmodified _FGSIVDYDIP_ 0 0 0 REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.2767944335938 2 563.276772 1124.53899 0.38844 0.0002188 0.08438 4.7529E-05 0.47282 0.00026633 563.2767428234652 74.997 1.1982 78.391 77.999 79.197 3.3937 265 109 4 0 0 0 0.27684 1 18522 18522 36.127 7.0454 1 692180 + 7597 24581 4720 4725 9462 9462 -0.018296868591050952 FGSIVDYDIP 10 Unmodified _FGSIVDYDIP_ 0 0 0 REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.277099609375 2 563.276772 1124.53899 0.45665 0.00025722 0.22507 0.00012677 0.68171 0.00038399 563.276829642386 75.179 1.1389 78.492 78.115 79.254 3.3127 295 113 4 0 0 0 0.27684 2 18575 18575;18684 36.127 2.0246 1 952050 + 7598 24581 4720 4725 9463;9464 9463 -0.018296868591050952 FGSIVDYDIP 10 Unmodified _FGSIVDYDIP_ 0 0 0 REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.778076171875 2 563.276772 1124.53899 0.46396 0.00026134 -0.9787 -0.00055128 -0.51474 -0.00028994 563.2764481864327 76.018 0.23261 79.339 79.242 79.475 3.3216 40 22 3 0 0 0 0.52562 1 18810 18810 8.7454 2.5396 1 47832 + 7599 24581 4720 4725 9465 9465 -0.018296868591050952 FGSIVDYDIP 10 Unmodified _FGSIVDYDIP_ 0 0 0 REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense REV__L1M4c_dup1517|chr8:24316597-24317753:+|1.1836872178441429|0.0458347006186999|4.69|150.0|68|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.27685546875 2 563.276772 1124.53899 0.45776 0.00025785 0.20985 0.0001182 0.66761 0.00037605 563.2768373995103 75.256 1.1959 78.503 78.077 79.272 3.2464 322 115 4 0 0 0 0.27684 5 18668 18595;18668;18705;18742;18781 36.127 9.8246 1 909310 + 7600 24581 4720 4725 9466;9467;9468;9469;9470 9467 -0.018296868591050952 FGSLLEFPF 9 Unmodified _FGSLLEFPF_ 0 0 0 L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|96|3|anti-sense L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|96|3|anti-sense L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|96|3|anti-sense MSMS UPN47_class_I_Rep_2 3 528.7759399414062 2 528.773668 1055.53278 NaN NaN NaN NaN NaN NaN NaN 86.578 1 90.019 89.519 90.519 3.4407 0 0 0 0.36505 1 21535 21535 7.2892 0.56607 1 7601 9441 4721 4726 9471 9471 0.007238397000492114 FGSLSYKT 8 Unmodified _FGSLSYKT_ 0 0 0 REV__L1MB3_dup11684|chr12:45896923-45897530:+|2.711634354267814|0.3597903592513929|2.91|151.0|32|3|anti-sense REV__L1MB3_dup11684|chr12:45896923-45897530:+|2.711634354267814|0.3597903592513929|2.91|151.0|32|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 451.73419189453125 2 451.734543 901.454533 0.17105 7.7271E-05 -0.96342 -0.00043521 -0.79237 -0.00035794 451.7340824048802 94.675 0.11655 98.576 98.491 98.608 3.9016 19 14 2 0 0 0 0.82752 1 22427 22427 2.0598 0 1 77024 + 7602 25801 4722 4727 9472 9472 -0.0001359288519324764 FGSVSGYKFL 10 Unmodified _FGSVSGYKFL_ 0 0 0 REV__L1ME2z_dup5098|chr13:72911210-72911742:+|1.016306887930498|0.0252014050956003|5.33|151.0|43|3|anti-sense REV__L1ME2z_dup5098|chr13:72911210-72911742:+|1.016306887930498|0.0252014050956003|5.33|151.0|43|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7920532226562 2 552.78985 1103.56515 0.37014 0.00020461 2.9373 0.0016237 3.3074 0.0018283 552.7915704808247 67.625 0.32158 70.986 70.827 71.149 3.3611 30 22 2 0 0 0 0.53004 1 16289 16289 8.1555 1.4324 1 66648 + 7603 27927 4723 4728 9473 9473 0.01750627103047009 FGTCASVFI 9 Unmodified _FGTCASVFI_ 0 0 0 L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense L1PA16_dup876|chr1:246256417-246257771:-|7.249140807594898|0.0473344026605451|7.26|151.0|66|2|anti-sense MSMS UPN48_class_I_Rep_2 6 472.7289123535156 2 472.730946 943.447339 NaN NaN NaN NaN NaN NaN NaN 91.116 1 94.872 94.372 95.372 3.7554 0 0 0 0.28335 1 21693 21693 11.64 2.2929 1 7604 14128 4724 4729 9474 9474 -0.0266464875727479 FGTFFSFHFV 10 Unmodified _FGTFFSFHFV_ 0 0 0 REV__L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|70|2|anti-sense REV__L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_1 2 618.2988891601562 2 618.297842 1234.58113 NaN NaN NaN NaN NaN NaN NaN 66.298 1 69.656 69.156 70.156 3.3576 0 0 0 0.53105 1 15872 15872 1.6526 0.17072 1 + 7605 28595 4725 4730 9475 9475 -0.026776666600653698 FGTPGHAR 8 Unmodified _FGTPGHAR_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MSMS UPN47_class_I_Rep_2 3 421.7168273925781 2 421.717019 841.419485 -0.93725 -0.00039526 0.49282 0.00020783 -0.44444 -0.00018743 421.7172034107585 15.532 0.31328 18.919 18.821 19.135 3.3864 48 34 2 0 0 0 0.82752 1 856 856 2.0598 0 1 25937 + 7606 20551 4726 4731 9476 9476 -0.007567909024828623 FGVHLAIF 8 Unmodified _FGVHLAIF_ 0 0 0 ENST00000509314.5_1_4:15661362-15661458:-|nuORF ENST00000509314.5_1_4:15661362-15661458:-|nuORF ENST00000509314.5_1_4:15661362-15661458:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 452.7595520019531 2 452.257988 902.501424 0.10494 4.746E-05 -0.039828 -1.8012E-05 0.065112 2.9447E-05 452.25785039098116 49.638 0.6973 53.333 53.038 53.735 3.6946 63 44 2 0 0 0 0.72333 1 10168 10168 2.8892 0 1 185540 7607 7171 4727 4732 9477 9477 0.046273114565906326 FGVLRIDR 8 Unmodified _FGVLRIDR_ 0 0 0 REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|53|1|anti-sense REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|53|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.2904968261719 2 488.290351 974.566149 0.45697 0.00022314 -0.0096754 -4.7244E-06 0.4473 0.00021841 488.29018893002933 110.95 0.10338 114.48 114.42 114.53 3.5271 20 8 4 0 0 0 0.82752 1 27009 27009 4.756 0 1 796580 + 7608 23334 4728 4733 9478 9478 0.07784886262595592 FGVLRIDR 8 Unmodified _FGVLRIDR_ 0 0 0 REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|53|1|anti-sense REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|53|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 488.290351 974.566149 0.45697 0.00022314 -0.0096754 -4.7244E-06 0.4473 0.00021841 488.29018893002933 110.95 0.10338 114.48 114.42 114.53 3.5271 -0.072446 -9.0886E-05 NaN 4.756 20 8 4 NaN NaN NaN NaN 0 NaN NaN 0 796580 + 7609 23334 4728 4733 0.07784886262595592 FGVLRIDR 8 Unmodified _FGVLRIDR_ 0 0 0 REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|53|1|anti-sense REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|53|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 488.290351 974.566149 0.23699 0.00011572 0.21291 0.00010396 0.4499 0.00021968 488.29015465796203 110.96 0.17144 114.62 114.6 114.77 3.6654 0.072446 0.00012648 NaN 4.756 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 182760 + 7610 23334 4728 4733 0.07784886262595592 FGVVAAFCCA 10 Unmodified _FGVVAAFCCA_ 0 0 0 ENSG00000184497|ENST00000375353|TMEM255B ENSG00000184497|ENST00000375353|TMEM255B ENSG00000184497|ENST00000375353|TMEM255B MSMS UPN48_class_I_Rep_2 6 494.2242126464844 2 494.224974 986.435394 NaN NaN NaN NaN NaN NaN NaN 37.219 1 40.921 40.421 41.421 3.7021 0 0 0 0.53105 1 6345 6345 1.8442 0.36234 1 7611 5056 4729 4734 9479 9479 -0.05836588772115192 FGVWLMMP 8 Unmodified _FGVWLMMP_ 0 0 0 REV__MLT1A0_dup20596|chr22:49610048-49610391:+|1.4139881448091742|0.0203800781747649|6.12|150.0|18|2|anti-sense REV__MLT1A0_dup20596|chr22:49610048-49610391:+|1.4139881448091742|0.0203800781747649|6.12|150.0|18|2|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7384338378906 2 490.74026 979.465966 NaN NaN NaN NaN NaN NaN NaN 116.21 1 119.84 119.34 120.34 3.6254 0 0 0 0.40581 1 28290 28290 2.8892 0.31174 1 + 7612 31595 4730 4735 9480 9480 -0.024588103870655686 FGYLYFMVW 9 Unmodified _FGYLYFMVW_ 0 0 0 L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|176|3|anti-sense L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|176|3|anti-sense L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|176|3|anti-sense MSMS UPN48_class_I_Rep_1 5 613.2926635742188 2 613.291171 1224.56779 NaN NaN NaN NaN NaN NaN NaN 25.4 1 28.966 28.466 29.466 3.5667 0 0 0 0.40038 1 2954 2954 0.6015 0 1 7613 13302 4731 4736 9481 9481 -0.035512407636360876 FHAFEEMI 8 Unmodified _FHAFEEMI_ 0 0 0 nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP nc|ENSG00000124356|O95630-2|STAMBP nc|ENSG00000124356|O95630-2|STAMBP MSMS UPN47_class_I_Rep_2 3 512.2344970703125 2 512.233853 1022.45315 NaN NaN NaN NaN NaN NaN NaN 29.59 1 33.082 32.582 33.582 3.4923 0 0 0 0.40738 1 4760 4760 0.79363 0 1 7614 2462 4732 4737 9482 9482 -0.05717550245606162 FHALFYLLAL 10 Unmodified _FHALFYLLAL_ 0 0 0 REV__ENSG00000111596.14,CNOT2,chr12,+,I4.1,70285587,70290726|33|11.24|1|intron REV__ENSG00000111596.14,CNOT2,chr12,+,I4.1,70285587,70290726|33|11.24|1|intron MSMS UPN47_class_I_Rep_3 4 604.3461303710938 2 604.347335 1206.68012 NaN NaN NaN NaN NaN NaN NaN 71.482 1 74.701 74.201 75.201 3.2188 0 0 0 0.53105 1 17541 17541 1.8442 0.36234 1 + 7615 18457 4733 4738 9483 9483 0.08504356304865723 FHAQGIFF 8 Unmodified _FHAQGIFF_ 0 0 0 REV__L1M5_dup48166|chr17:29751750-29752916:+|6.246580125385043|0.054398655247771|6.84|151.0|19|2|sense REV__L1M5_dup48166|chr17:29751750-29752916:+|6.246580125385043|0.054398655247771|6.84|151.0|19|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 483.743896484375 2 483.745245 965.475937 0.16657 8.0579E-05 -0.53077 -0.00025676 -0.3642 -0.00017618 483.74481091234304 44.171 0.81085 47.933 47.634 48.445 3.7617 97 58 2 0 0 0 0.82752 1 8491 8491 9.3474 0.75416 1 203740 + 7616 24688 4734 4739 9484 9484 -0.008181630658100403 FHAYAIYL 8 Unmodified _FHAYAIYL_ 0 0 0 REV__MER2_dup7701|chr15:44603641-44603976:-|1.4417579943462326|0.1724589903639324|3.06|151.0|19|2|anti-sense REV__MER2_dup7701|chr15:44603641-44603976:-|1.4417579943462326|0.1724589903639324|3.06|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_2 3 499.2580261230469 2 499.260728 996.506903 NaN NaN NaN NaN NaN NaN NaN 40.822 1 44.193 43.693 44.693 3.3712 0 0 0 0.39167 1 8168 8168 11.114 1.767 1 + 7617 31150 4735 4740 9485 9485 0.008509902483979204 FHCCLHFWC 9 Unmodified _FHCCLHFWC_ 0 0 0 L1MB3_dup6772|chr7:73456076-73456659:+|1.8193491499901893|0.1012103953123775|4.17|151.0|34|2|anti-sense L1MB3_dup6772|chr7:73456076-73456659:+|1.8193491499901893|0.1012103953123775|4.17|151.0|34|2|anti-sense L1MB3_dup6772|chr7:73456076-73456659:+|1.8193491499901893|0.1012103953123775|4.17|151.0|34|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.2350463867188 2 598.23535 1194.45615 NaN NaN NaN NaN NaN NaN NaN 69.481 1 72.849 72.349 73.349 3.3678 0 0 0 0.40038 1 16838 16838 0.6015 0 1 7618 10445 4736 4741 9486 9486 -0.13330321664102485 FHCISQALVC 10 Unmodified _FHCISQALVC_ 0 0 0 L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|110|3|anti-sense L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|110|3|anti-sense L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|110|3|anti-sense MSMS UPN48_class_I_Rep_2 6 560.7656860351562 2 560.767537 1119.52052 NaN NaN NaN NaN NaN NaN NaN 37.733 1 41.449 40.949 41.949 3.7164 0 0 0 0.53105 1 6490 6490 1.3295 0.5359 1 7619 9601 4737 4742 9487 9487 -0.034458433063036864 FHCVKLYYF 9 Unmodified _FHCVKLYYF_ 0 0 0 REV__L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|195|3|anti-sense REV__L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|195|3|anti-sense MSMS UPN47_class_I_Rep_1 2 406.77606201171875 3 407.203805 1218.58959 NaN NaN NaN NaN NaN NaN NaN 59.444 1 62.842 62.342 63.342 3.3982 0 0 0 0.40038 1 13804 13804 0.26902 0.1097 1 + 7620 30401 4738 4743 9488 9488 -0.010964360151092478 FHDPCAHM 8 Unmodified _FHDPCAHM_ 0 0 0 Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|21|3|sense Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|21|3|sense Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 479.3368835449219 2 479.188923 956.363292 NaN NaN NaN NaN NaN NaN NaN 101.1 1 101.1 100.6 101.6 0 0 0 0 0.40738 1 24662 24662 0.79363 0.10326 1 7621 481 4739 4744 9489 9489 -0.11663503125828356 FHEYCCSEY 9 Unmodified _FHEYCCSEY_ 0 0 0 REV__L1MB7_dup4002|chr3:33426423-33426964:-|1.737496865184729|0.1102004655902432|3.98|150.0|39|3|anti-sense REV__L1MB7_dup4002|chr3:33426423-33426964:-|1.737496865184729|0.1102004655902432|3.98|150.0|39|3|anti-sense MSMS UPN47_class_I_Rep_2 3 590.7069091796875 2 590.707342 1179.40013 NaN NaN NaN NaN NaN NaN NaN 31.503 1 34.972 34.472 35.472 3.4691 0 0 0 0.40038 1 5340 5340 0.6015 0 1 + 7622 26257 4740 4745 9490 9490 -0.18239296090587231 FHEYHYPCHF 10 Unmodified _FHEYHYPCHF_ 0 0 0 REV__THE1B-int_dup704|chr3:31605728-31607318:+|1.5286959932725146|0.1362610722415218|3.49|151.0|65|1|anti-sense REV__THE1B-int_dup704|chr3:31605728-31607318:+|1.5286959932725146|0.1362610722415218|3.49|151.0|65|1|anti-sense MSMS UPN46_class_I_Rep_3 1 460.78265380859375 3 460.525719 1378.55533 NaN NaN NaN NaN NaN NaN NaN 48.933 1 48.933 48.433 49.433 0 0 0 0 0.53105 1 10236 10236 0.77653 0 1 + 7623 32275 4741 4746 9491 9491 -0.11880884174001949 FHFAPDYQ 8 Unmodified _FHFAPDYQ_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|15|2|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 512.2451171875 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 118.56 1 118.56 118.06 119.06 0 0 0 0 0.40738 1 29434 29434 0.79363 0 1 + 7624 25951 4742 4747 9492 9492 -0.06575361170723681 FHFCILHFSC 10 Unmodified _FHFCILHFSC_ 0 0 0 Tigger3b_dup1194|chr3:88089858-88090758:+|1.0827469776191532|0.1174487930632363|3.2|151.0|55|2|anti-sense Tigger3b_dup1194|chr3:88089858-88090758:+|1.0827469776191532|0.1174487930632363|3.2|151.0|55|2|anti-sense Tigger3b_dup1194|chr3:88089858-88090758:+|1.0827469776191532|0.1174487930632363|3.2|151.0|55|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 627.2828369140625 2 627.283354 1252.55216 0.047955 3.0081E-05 -1.4102 -0.00088462 -1.3623 -0.00085454 627.2824227503626 15.733 0.25785 19.119 18.988 19.245 3.3864 37 27 2 0 0 0 0.56478 1 904 904 0.45834 0.057624 1 29253 7625 33367 4743 4748 9493 9493 -0.06401850552333599 FHFLVITF 8 Unmodified _FHFLVITF_ 0 0 0 nc|ENSG00000112144|Q9UPZ9-2|CILK1 nc|ENSG00000112144|Q9UPZ9-2|CILK1 nc|ENSG00000112144|Q9UPZ9-2|CILK1 MSMS UPN47_class_I_Rep_1 2 512.2843627929688 2 512.286746 1022.55894 NaN NaN NaN NaN NaN NaN NaN 28.35 1 32.116 31.616 32.616 3.7662 0 0 0 0.40738 1 4354 4354 0.79363 0 1 7626 16662 4744 4749 9494 9494 0.048561536621718915 FHFPHSNLF 9 Unmodified _FHFPHSNLF_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|205|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|205|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|205|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.280029296875 2 573.279983 1144.54541 0.51294 0.00029406 0.18403 0.0001055 0.69696 0.00039955 573.2800368576835 77.28 0.79124 80.881 80.602 81.394 3.6016 141 70 3 0 0 0 0.051515 2 18239 18213;18239 48.346 0 1 400290 7627 14843 4745 4750 9495;9496 9496 -0.02107704117065623 FHFVPNHY 8 Unmodified _FHFVPNHY_ 0 0 0 REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|87|3|anti-sense REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|87|3|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7540283203125 2 530.753601 1059.49265 NaN NaN NaN NaN NaN NaN NaN 36.354 1 39.609 39.109 40.109 3.2547 0 0 0 0.40738 1 6844 6844 0.79363 0 1 + 7628 26266 4746 4751 9497 9497 -0.034716621798679625 FHGDPHATF 9 Unmodified _FHGDPHATF_ 0 0 0 nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5;ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4 nc|ENSG00000137094|O75953|DNAJB5 nc|ENSG00000137094|O75953|DNAJB5 MULTI-MSMS UPN47_class_I_Rep_3 4 514.7329711914062 2 514.732866 1027.45118 0.18652 9.6008E-05 0.066081 3.4014E-05 0.2526 0.00013002 514.7328823498821 57.898 0.40312 61.066 60.881 61.284 3.1681 38 28 2 0 0 0 0.35081 1 13429 13429 10.824 0.75 1 76116 7629 3007 4747 4752 9498 9498 -0.06144842939215778 FHGFQWFID 9 Unmodified _FHGFQWFID_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|109|2|anti-sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|109|2|anti-sense MSMS UPN47_class_I_Rep_2 3 598.7816162109375 2 598.779816 1195.54508 NaN NaN NaN NaN NaN NaN NaN 63.563 1 66.819 66.319 67.319 3.2558 0 0 0 0.38784 1 15089 15089 3.5965 0.60125 1 + 7630 29472 4748 4753 9499 9499 -0.04487123836906903 FHGSPASFVAR 11 Unmodified _FHGSPASFVAR_ 0 0 0 REV__L1P3_dup2767|chr13:19652133-19654196:+|1.4245490640814402|0.2573734263599609|2.47|151.0|95|3|anti-sense REV__L1P3_dup2767|chr13:19652133-19654196:+|1.4245490640814402|0.2573734263599609|2.47|151.0|95|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.3016357421875 2 588.301447 1174.58834 0.41433 0.00024375 -0.19412 -0.0001142 0.22021 0.00012955 588.3012601159041 36.983 0.46871 40.646 40.327 40.796 3.663 76 50 2 0 0 0 0.59712 1 6148 6148 5.2969 0.54088 1 111060 + 7631 28891 4749 4754 9500 9500 0.008030659403630125 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 476.32647705078125 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 32.956 1 32.956 32.456 33.456 0 0 0 0 0.40746 1 5705 5705 0.69038 0 1 7632 8680 4750 4755 9501 9501 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 476.3070983886719 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 118.21 1 118.21 117.71 118.71 0 0 0 0 0.40746 1 29334 29334 0.69038 0 1 7633 8680 4750 4755 9502 9502 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 476.1984558105469 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 27.664 1 31.43 30.93 31.93 3.7662 0 0 0 0.40746 1 4150 4150 0.69038 0 1 7634 8680 4750 4755 9503 9503 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 476.1986083984375 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 58.954 1 62.371 61.871 62.871 3.4171 0 0 0 0.40746 1 13652 13652 0.69038 0 1 7635 8680 4750 4755 9504 9504 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 476.3069152832031 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 111.21 1 114.78 114.28 115.28 3.572 0 0 0 0.40746 1 27423 27423 0.69038 0 1 7636 8680 4750 4755 9505 9505 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 476.19854736328125 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 113.46 1 117.03 116.53 117.53 3.572 0 0 0 0.40746 1 27995 27995 0.69038 0 1 7637 8680 4750 4755 9506 9506 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 476.1980895996094 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 14.595 1 17.982 17.482 18.482 3.3871 0 0 0 0.40746 1 605 605 0.69038 0 1 7638 8680 4750 4755 9507 9507 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN47_class_I_Rep_3 4 476.30657958984375 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 89.576 1 92.974 92.474 93.474 3.3976 0 0 0 0.40746 1 22456 22456 0.69038 0 1 7639 8680 4750 4755 9508 9508 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 476.1979064941406 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 14.32 1 17.835 17.335 18.335 3.5156 0 0 0 0.40746 1 396 396 0.69038 0 1 7640 8680 4750 4755 9509 9509 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 476.1983337402344 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 96.138 1 99.75 99.25 100.25 3.6124 0 0 0 0.40604 1 23153 23153 2.5775 0 1 7641 8680 4750 4755 9510 9510 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 476.19866943359375 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 91.806 1 95.569 95.069 96.069 3.7629 0 0 0 0.40604 1 21860 21860 2.5775 0 1 7642 8680 4750 4755 9511 9511 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 476.1987609863281 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 96.216 1 99.997 99.497 100.5 3.7804 0 0 0 0.40604 1 22853 22853 2.5775 0 1 7643 8680 4750 4755 9512 9512 -0.09545625159603333 FHHAHMGD 8 Unmodified _FHHAHMGD_ 0 0 0 L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 476.1982421875 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 38.559 1 42.218 41.718 42.718 3.6595 0 0 0 0.40746 1 6642 6642 0.69038 0 1 7644 8680 4750 4755 9513 9513 -0.09545625159603333 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.288330078125 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 54.823 1 58.325 57.825 58.825 3.5014 0 0 0 0.39167 1 12396 12396 11.114 0.29054 1 7645 11923 4751 4756 9514 9514 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2879028320312 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.03 1 58.531 58.031 59.031 3.5014 0 0 0 0.37152 1 12459 12459 17.087 3.5787 1 7646 11923 4751 4756 9515 9515 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2881469726562 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.195 1 58.674 58.174 59.174 3.4785 0 0 0 0.39167 1 12509 12509 11.114 2.5212 1 7647 11923 4751 4756 9516 9516 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.288818359375 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 59.708 1 63.107 62.607 63.607 3.3982 0 0 0 0.40581 1 13884 13884 2.8892 0 1 7648 11923 4751 4756 9517 9517 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2876586914062 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 59.916 1 63.314 62.814 63.814 3.3982 0 0 0 0.4032 1 13948 13948 6.3541 1.5981 1 7649 11923 4751 4756 9518 9518 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_2 3 525.2877197265625 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.117 1 58.427 57.927 58.927 3.3102 0 0 0 0.37152 1 12514 12514 17.087 3.5787 1 7650 11923 4751 4756 9519 9519 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_2 3 525.2885131835938 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.295 1 58.605 58.105 59.105 3.3102 0 0 0 0.39167 1 12569 12569 11.114 2.5212 1 7651 11923 4751 4756 9520 9520 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_2 3 525.288330078125 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.437 1 58.747 58.247 59.247 3.3102 0 0 0 0.34139 1 12613 12613 24.21 4.771 1 7652 11923 4751 4756 9521 9521 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.288330078125 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.266 1 58.444 57.944 58.944 3.1779 0 0 0 0.39167 1 12616 12616 11.114 2.5212 1 7653 11923 4751 4756 9522 9522 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.2881469726562 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.438 1 58.616 58.116 59.116 3.1779 0 0 0 0.34139 1 12669 12669 24.21 1.0615 1 7654 11923 4751 4756 9523 9523 0.038332074708023356 FHHHIIVF 8 Unmodified _FHHHIIVF_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.2883911132812 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 55.609 1 58.787 58.287 59.287 3.1779 0 0 0 0.39167 1 12721 12721 11.114 2.5212 1 7655 11923 4751 4756 9524 9524 0.038332074708023356 FHHLWKAL 8 Unmodified _FHHLWKAL_ 0 0 0 REV__L1MB8_dup7564|chr8:123800501-123801296:-|1.5481139160796735|0.1251100187898126|3.63|150.0|56|3|anti-sense REV__L1MB8_dup7564|chr8:123800501-123801296:-|1.5481139160796735|0.1251100187898126|3.63|150.0|56|3|anti-sense MSMS UPN48_class_I_Rep_1 5 526.2948608398438 2 526.295436 1050.57632 NaN NaN NaN NaN NaN NaN NaN 35.59 1 39.101 38.601 39.601 3.5101 0 0 0 0.40738 1 5839 5839 0.79363 0 1 + 7656 26433 4752 4757 9525 9525 0.05305493987839327 FHHPGLRH 8 Unmodified _FHHPGLRH_ 0 0 0 REV__ENSG00000105851|ENST00000496166|PIK3CG REV__ENSG00000105851|ENST00000496166|PIK3CG MSMS UPN46_class_I_Rep_3 1 500.2960205078125 2 500.764835 999.515117 NaN NaN NaN NaN NaN NaN NaN 112.66 1 112.66 112.16 113.16 0 0 0 0 0.40746 1 27819 27819 0.69038 0 1 + 7657 18307 4753 4758 9526 9526 0.01533982008413659 FHHPHPKR 8 Unmodified _FHHPHPKR_ 0 0 0 L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|54|1|anti-sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|54|1|anti-sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_3 4 528.2858276367188 2 528.285934 1054.55732 NaN NaN NaN NaN NaN NaN NaN 25.376 1 28.726 28.226 29.226 3.3509 0 0 0 0.40738 1 3558 3558 0.79363 0 1 7658 10660 4754 4759 9527 9527 0.03221957416803889 FHHVRAKQ 8 Unmodified _FHHVRAKQ_ 0 0 0 MLT1A0_dup12665|chrX:119424672-119425018:-|1.14606981088747|0.0580100866283669|4.3|151.0|9|2|sense MLT1A0_dup12665|chrX:119424672-119425018:-|1.14606981088747|0.0580100866283669|4.3|151.0|9|2|sense MLT1A0_dup12665|chrX:119424672-119425018:-|1.14606981088747|0.0580100866283669|4.3|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.7855224609375 2 511.785767 1021.55698 -0.20958 -0.00010726 -1.0394 -0.00053193 -1.249 -0.0006392 511.7852530777206 28.149 0.65355 31.916 31.625 32.279 3.7662 68 51 2 0 0 0 0.82752 1 4209 4209 0.79363 0.10326 1 99770 7659 16248 4755 4760 9528 9528 0.0470653769693854 FHHYHYQA 8 Unmodified _FHHYHYQA_ 0 0 0 REV__ENST00000282561.3_1_6:121769761-121769857:+|nuORF REV__ENST00000282561.3_1_6:121769761-121769857:+|nuORF MSMS UPN46_class_I_Rep_3 1 551.7470703125 2 551.746308 1101.47806 NaN NaN NaN NaN NaN NaN NaN 69.052 1 69.052 68.552 69.552 0 0 0 0 0.40738 1 15801 15801 0.79363 0 1 + 7660 21631 4756 4761 9529 9529 -0.06861734328003877 FHHYLYPQT 9 Unmodified _FHHYLYPQT_ 0 0 0 REV__HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|21|1|anti-sense REV__HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 603.2899780273438 2 603.290548 1204.56654 NaN NaN NaN NaN NaN NaN NaN 43.106 1 46.794 46.294 47.294 3.6875 0 0 0 0.40038 1 8831 8831 0.6015 0 1 + 7661 23346 4757 4762 9530 9530 -0.027557388082186662 FHHYSLTTSL 10 Unmodified _FHHYSLTTSL_ 0 0 0 REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|106|1|anti-sense REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|106|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 603.3009643554688 2 603.301113 1204.58767 0.046204 2.7875E-05 -0.43973 -0.00026529 -0.39352 -0.00023741 603.3008115698499 30.495 0.68114 33.977 33.499 34.18 3.4821 92 53 2 0 0 0 0.56281 1 4924 4924 1.8442 1.2427 1 140730 + 7662 31441 4758 4763 9531 9531 -0.006437734993596678 FHIFEQVCEG 10 Unmodified _FHIFEQVCEG_ 0 0 0 REV__L1P3_dup2652|chr12:11256066-11261811:+|5.774046497810674|0.102807162033627|5.81|151.0|193|1|anti-sense REV__L1P3_dup2652|chr12:11256066-11261811:+|5.774046497810674|0.102807162033627|5.81|151.0|193|1|anti-sense MSMS UPN48_class_I_Rep_2 6 604.7765502929688 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 42.305 1 46.063 45.563 46.563 3.7579 0 0 0 0.53105 1 7816 7816 1.6526 0 1 + 7663 28889 4759 4764 9532 9532 -0.062271086424289024 FHIPRPLF 8 Unmodified _FHIPRPLF_ 0 0 0 L1PA2_dup3858|chr12:11297657-11303685:+|1.3991242902592256|0.229719972778847|2.61|151.0|303|3|anti-sense L1PA2_dup3858|chr12:11297657-11303685:+|1.3991242902592256|0.229719972778847|2.61|151.0|303|3|anti-sense L1PA2_dup3858|chr12:11297657-11303685:+|1.3991242902592256|0.229719972778847|2.61|151.0|303|3|anti-sense MSMS UPN47_class_I_Rep_1 2 513.7969970703125 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 98.234 1 102.02 101.52 102.52 3.7861 0 0 0 0.40604 1 24321 24321 2.5775 0 1 7664 14200 4760 4765 9533 9533 0.06930378130596182 FHIWCYECC 9 Unmodified _FHIWCYECC_ 0 0 0 REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|69|3|anti-sense REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|69|3|anti-sense MSMS UPN48_class_I_Rep_1 5 602.2220458984375 2 602.224648 1202.43474 NaN NaN NaN NaN NaN NaN NaN 118.03 1 121.66 121.16 122.16 3.6215 0 0 0 0.40038 1 28779 28779 0.6015 0.20078 1 + 7665 27932 4761 4766 9534 9534 -0.1583775148346831 FHIWCYECC 9 Unmodified _FHIWCYECC_ 0 0 0 REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|69|3|anti-sense REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|69|3|anti-sense MSMS UPN48_class_I_Rep_2 6 602.22412109375 2 602.224648 1202.43474 NaN NaN NaN NaN NaN NaN NaN 20.281 1 23.929 23.429 24.429 3.648 0 0 0 0.40038 1 1712 1712 0.6015 0.076735 1 + 7666 27932 4761 4766 9535 9535 -0.1583775148346831 FHIYHFQC 8 Unmodified _FHIYHFQC_ 0 0 0 L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|280|2|anti-sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|280|2|anti-sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|280|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.2835693359375 2 547.747462 1093.48037 NaN NaN NaN NaN NaN NaN NaN 114.44 1 117.95 117.45 118.45 3.5109 0 0 0 0.40738 1 27867 27867 0.79363 0 1 7667 12462 4762 4767 9536 9536 -0.06263021914537603 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 634.3775024414062 2 634.908091 1267.80163 0.56742 0.00036026 0.15191 9.6449E-05 0.71933 0.00045671 634.9080577179373 104.8 0.074478 108.54 108.52 108.6 3.7395 16 11 2 0 0 0 0.84575 1 25734 25734 3.5965 0 1 5108200 7668 10388 4763 4768 9537 9537 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 634.3777465820312 2 634.908091 1267.80163 0.5674 0.00036025 0.10436 6.6259E-05 0.67176 0.00042651 634.9079717835014 104.93 0.10162 108.67 108.59 108.69 3.7395 24 15 2 0 0 0 0.84575 1 25762 25762 3.5965 0 1 4368200 7669 10388 4763 4768 9538 9538 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 634.377685546875 2 634.908091 1267.80163 0.63454 0.00040288 0.22711 0.00014419 0.86165 0.00054707 635.4098205807875 105.3 0.1311 108.83 108.77 108.9 3.5327 23 20 2 0 0 0 0.84575 1 25535 25535 3.5965 0 1 2125900 7670 10388 4763 4768 9539 9539 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 634.3778686523438 2 634.908091 1267.80163 0.43234 0.0002745 0.91473 0.00058077 1.3471 0.00085527 634.9086534503805 104.61 0.15965 108.24 108.2 108.36 3.6247 32 23 2 0 0 0 0.84575 1 25220 25220 3.5965 0 1 3489800 7671 10388 4763 4768 9540 9540 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 634.3778076171875 2 634.908091 1267.80163 0.43235 0.0002745 0.40997 0.00026029 0.84232 0.0005348 634.9080019676148 104.94 0.24243 108.56 108.52 108.76 3.6247 44 33 2 0 0 0 0.84575 1 25309 25309 1.4819 0 1 1305400 7672 10388 4763 4768 9541 9541 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 634.3775634765625 2 634.908091 1267.80163 0.43234 0.00027449 0.44301 0.00028127 0.87534 0.00055576 634.9079404432233 104.45 0.22195 108.08 107.99 108.21 3.6247 51 29 2 0 0 0 0.84575 1 25189 25189 3.5965 0 1 13879000 7673 10388 4763 4768 9542 9542 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 634.3778076171875 2 634.908091 1267.80163 0.62078 0.00039414 0.43464 0.00027596 1.0554 0.00067009 635.4100055499243 105.1 0.21359 108.8 108.71 108.93 3.702 39 30 2 0 0 0 0.84575 1 24791 24791 1.4819 0 1 1668900 7674 10388 4763 4768 9543 9543 0.17843978667383453 FHKKLKIELL 10 Unmodified _FHKKLKIELL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 634.908091 1267.80163 0.63448 0.00040284 0.41569 0.00026392 1.0502 0.00066676 634.908119734949 104.83 0.038918 108.36 108.33 108.37 3.5327 -0.099615 6.3534E-06 NaN 1.4819 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3708900 7675 10388 4763 4768 0.17843978667383453 FHKKVAKI 8 Unmodified _FHKKVAKI_ 0 0 0 L1MEc_dup18260|chr22:40062533-40063691:-|2.787151800796335|0.0159986408145801|7.44|151.0|38|3|sense L1MEc_dup18260|chr22:40062533-40063691:-|2.787151800796335|0.0159986408145801|7.44|151.0|38|3|sense L1MEc_dup18260|chr22:40062533-40063691:-|2.787151800796335|0.0159986408145801|7.44|151.0|38|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.3167724609375 2 485.813462 969.612371 0.17967 8.7288E-05 -1.4467 -0.00070281 -1.267 -0.00061552 485.811701731913 64.886 0.60949 68.141 67.867 68.477 3.2556 78 49 3 0 0 0 0.82752 1 15573 15573 2.3027 0 1 597530 7676 13069 4764 4769 9544 9544 0.12634951164693575 FHKYLHRIR 9 Unmodified _FHKYLHRIR_ 0 0 0 REV__MRPL51|p.Y116H|1|0.09|ENSG00000111639|chr12:6492312-6492312|A/G|missense_variant REV__MRPL51|p.Y116H|1|0.09|ENSG00000111639|chr12:6492312-6492312|A/G|missense_variant MSMS UPN46_class_I_Rep_3 1 635.3709716796875 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 99.582 1 99.582 99.082 100.08 0 0 0 0 0.4007 1 24265 24265 0.52476 0 1 + 7677 31838 4765 4770 9545 9545 0.10183019610576594 FHLFISWW 8 Unmodified _FHLFISWW_ 0 0 0 L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|35|3|anti-sense L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|35|3|anti-sense L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 568.2914428710938 2 568.28982 1134.56509 0.13306 7.5619E-05 1.3371 0.00075988 1.4702 0.0008355 568.2906592393135 43.406 0.75481 46.764 46.443 47.198 3.358 59 46 2 0 0 0 0.82752 1 8898 8898 0.79363 0 1 74100 7678 8886 4766 4771 9546 9546 0.0031867189370586857 FHLHKLRELP 10 Unmodified _FHLHKLRELP_ 0 0 0 REV__L1ME4a_dup14661|chr7:37078554-37078821:+|1.1941142110537162|0.0192105250487106|5.96|151.0|14|1|anti-sense REV__L1ME4a_dup14661|chr7:37078554-37078821:+|1.1941142110537162|0.0192105250487106|5.96|151.0|14|1|anti-sense MSMS UPN46_class_I_Rep_3 1 645.3779296875 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 69.515 1 69.515 69.015 70.015 0 0 0 0 0.53105 1 15934 15934 1.4819 0 1 + 7679 28215 4767 4772 9547 9547 0.10760466687929693 FHLRQYQW 8 Unmodified _FHLRQYQW_ 0 0 0 REV__nc|ENSG00000136206|Q8NFV5|SPDYE1 REV__nc|ENSG00000136206|Q8NFV5|SPDYE1 MSMS UPN48_class_I_Rep_1 5 589.2981567382812 2 589.298707 1176.58286 NaN NaN NaN NaN NaN NaN NaN 70.563 1 74.023 73.523 74.523 3.4598 0 0 0 0.40625 1 16453 16453 2.3027 0 1 + 7680 19177 4768 4773 9548 9548 0.0016338714854100544 FHLVCWFRE 9 Unmodified _FHLVCWFRE_ 0 0 0 REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|108|1|anti-sense REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|108|1|anti-sense MSMS UPN46_class_I_Rep_3 1 412.87103271484375 3 412.870938 1235.59098 NaN NaN NaN NaN NaN NaN NaN 13.433 1 13.433 12.933 13.933 0 0 0 0 0.40038 1 383 383 0.26902 0.033176 1 + 7681 24076 4769 4774 9549 9549 -0.017388019263307797 FHLVCWFRE 9 Unmodified _FHLVCWFRE_ 0 0 0 REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|108|1|anti-sense REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|108|1|anti-sense MSMS UPN47_class_I_Rep_1 2 618.8011474609375 2 618.802768 1235.59098 NaN NaN NaN NaN NaN NaN NaN 66.639 1 69.996 69.496 70.496 3.3576 0 0 0 0.40038 1 15975 15975 0.6015 0 1 + 7682 24076 4769 4774 9550 9550 -0.017388019263307797 FHLVGEDTL 9 Unmodified _FHLVGEDTL_ 0 0 0 ENSG00000183638|ENST00000382483|RP1L1 ENSG00000183638|ENST00000382483|RP1L1 ENSG00000183638|ENST00000382483|RP1L1 MULTI-MSMS UPN48_class_I_Rep_1 5 515.7637329101562 2 515.763832 1029.51311 0.29577 0.00015255 -0.17678 -9.1176E-05 0.11899 6.137E-05 515.7636527421039 35.364 0.93512 38.874 38.537 39.472 3.5101 228 93 3 0 0 0 0.41259 1 5911 5911 7.2892 0.56607 1 775520 7683 5007 4770 4775 9551 9551 -0.00046536310719602625 FHLYGQGITE 10 Unmodified _FHLYGQGITE_ 0 0 0 L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|58|2|sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|58|2|sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|58|2|sense MSMS UPN48_class_I_Rep_3 7 582.7894287109375 2 582.787838 1163.56112 NaN NaN NaN NaN NaN NaN NaN 27.612 1 31.368 30.868 31.868 3.7555 0 0 0 0.53105 1 3647 3647 1.6526 0.17072 1 7684 14823 4771 4776 9552 9552 -0.014114623906607449 FHMFYHAFY 9 Unmodified _FHMFYHAFY_ 0 0 0 REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4243948814444902|0.3370285026521366|2.08|134.0|260|3|anti-sense REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4243948814444902|0.3370285026521366|2.08|134.0|260|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 631.7755737304688 2 631.776219 1261.53789 -0.25529 -0.00016129 1.5041 0.00095025 1.2488 0.00078896 631.7772171520904 24.699 0.67452 28.05 27.945 28.619 3.3509 79 50 2 0 0 0 0.49458 1 3366 3366 0.6015 0.076735 1 61002 + 7685 30090 4772 4777 9553 9553 -0.08242179708986441 FHMRELYVC 9 Unmodified _FHMRELYVC_ 0 0 0 REV__ENSG00000047936|ENST00000368507|ROS1 REV__ENSG00000047936|ENST00000368507|ROS1 MSMS UPN47_class_I_Rep_3 4 599.2438354492188 2 599.280812 1196.54707 NaN NaN NaN NaN NaN NaN NaN 58.656 1 61.821 61.321 62.321 3.1658 0 0 0 0.39428 1 13646 13646 2.0598 0 1 + 7686 17666 4773 4778 9554 9554 -0.04334154414959812 FHNGPSPG 8 Unmodified _FHNGPSPG_ 0 0 0 REV__MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|60|1|anti-sense REV__MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|60|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 406.7760009765625 2 406.687927 811.361301 -0.042635 -1.7339E-05 0.0016585 6.7451E-07 -0.040976 -1.6664E-05 406.68771325489024 23.313 0.38444 26.873 26.734 27.119 3.5605 52 45 2 0 0 0 0.72333 1 2418 2418 2.3027 0 1 40403 + 7687 31878 4774 4779 9555 9555 -0.051924725477533684 FHNQQAWP 8 Unmodified _FHNQQAWP_ 0 0 0 REV__THE1B-int_dup2462|chr9:40087805-40089098:-|5.616334799608859|0.1181324436475716|5.57|151.0|69|3|anti-sense REV__THE1B-int_dup2462|chr9:40087805-40089098:-|5.616334799608859|0.1181324436475716|5.57|151.0|69|3|anti-sense MSMS UPN47_class_I_Rep_3 4 513.8070678710938 2 514.240858 1026.46716 NaN NaN NaN NaN NaN NaN NaN 68.322 1 71.52 71.02 72.02 3.1977 0 0 0 0.40738 1 16594 16594 0.79363 0 1 + 7688 32251 4775 4780 9556 9556 -0.04501136702288022 FHNQQAWP 8 Unmodified _FHNQQAWP_ 0 0 0 REV__THE1B-int_dup2462|chr9:40087805-40089098:-|5.616334799608859|0.1181324436475716|5.57|151.0|69|3|anti-sense REV__THE1B-int_dup2462|chr9:40087805-40089098:-|5.616334799608859|0.1181324436475716|5.57|151.0|69|3|anti-sense MSMS UPN48_class_I_Rep_3 7 513.797607421875 2 514.240858 1026.46716 NaN NaN NaN NaN NaN NaN NaN 82.849 1 86.555 86.055 87.055 3.7066 0 0 0 0.40738 1 19637 19637 0.79363 0 1 + 7689 32251 4775 4780 9557 9557 -0.04501136702288022 FHPIAKQA 8 Unmodified _FHPIAKQA_ 0 0 0 REV__ENSG00000171501|ENST00000373688|OR1N2 REV__ENSG00000171501|ENST00000373688|OR1N2 MULTI-MSMS UPN46_class_I_Rep_3 1 456.75811767578125 2 456.25852 910.502486 0.18089 8.2531E-05 -3.7378 -0.0017054 -3.5569 -0.0016229 456.2568922170917 78.707 0.06678 78.707 78.667 78.734 0 12 7 2 0 0 0 0.82752 1 18445 18445 2.5775 0.27475 1 79589 + 7690 20410 4776 4781 9558 9558 0.04365525825517125 FHPPPRGY 8 Unmodified _FHPPPRGY_ 0 0 0 REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 485.74725341796875 2 485.748319 969.482085 0.1069 5.1925E-05 -1.6203 -0.00078706 -1.5134 -0.00073513 485.74757860168353 65.904 0.28398 69.262 69.081 69.365 3.3576 23 18 2 0 0 0 0.82752 1 15773 15773 5.7604 0 1 37482 + 7691 23214 4777 4782 9559 9559 -0.003876448342907679 FHPPPRGY 8 Unmodified _FHPPPRGY_ 0 0 0 REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.74786376953125 2 485.748319 969.482085 NaN NaN NaN NaN NaN NaN NaN 66.073 1 69.332 68.832 69.832 3.2588 0 0 0 0.40364 1 15851 15851 5.7604 0 1 + 7692 23214 4777 4782 9560 9560 -0.003876448342907679 FHPPPRGY 8 Unmodified _FHPPPRGY_ 0 0 0 REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8122253417969 2 485.748319 969.482085 NaN NaN NaN NaN NaN NaN NaN 66.353 1 69.612 69.112 70.112 3.2588 0 0 0 0.40364 1 15936 15936 5.7604 0 1 + 7693 23214 4777 4782 9561 9561 -0.003876448342907679 FHPPPRGY 8 Unmodified _FHPPPRGY_ 0 0 0 REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF REV__ENST00000601984.1_1_19:7922791-7923253:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 485.748319 969.482085 0.13795 6.701E-05 -1.8753 -0.00091092 -1.7373 -0.00084391 485.74739672713065 66.226 0.34403 69.411 69.146 69.49 3.1853 0.074923 -0.00012872 NaN 5.7604 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 61248 + 7694 23214 4777 4782 -0.003876448342907679 FHQRYVCY 8 Unmodified _FHQRYVCY_ 0 0 0 REV__L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|78|3|anti-sense REV__L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.2589111328125 2 558.258194 1114.50183 0.38801 0.00021661 2.2152 0.0012366 2.6032 0.0014532 558.2594684106701 72.884 0.2634 76.264 76.115 76.378 3.3799 22 17 2 0 0 0 0.82752 1 17845 17845 5.7604 0.52976 1 47223 + 7695 25400 4778 4783 9562 9562 -0.050836368858426795 FHRAVEQH 8 Unmodified _FHRAVEQH_ 0 0 0 ENST00000574429.1_1_17:6544387-6544621:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17 ENST00000574429.1_1_17:6544387-6544621:+|nuORF ENST00000574429.1_1_17:6544387-6544621:+|nuORF MSMS UPN47_class_I_Rep_2 3 512.25927734375 2 512.259582 1022.50461 NaN NaN NaN NaN NaN NaN NaN 30.206 1 33.688 33.188 34.188 3.4821 0 0 0 0.40625 1 4946 4946 2.3027 0 1 7696 2614 4779 4784 9563 9563 -0.005740454366787162 FHRFLLLVN 9 Unmodified _FHRFLLLVN_ 0 0 0 L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|120|2|anti-sense L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|120|2|anti-sense L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|120|2|anti-sense MSMS UPN48_class_I_Rep_2 6 579.8447265625 2 579.842751 1157.67095 NaN NaN NaN NaN NaN NaN NaN 93.518 1 97.287 96.787 97.787 3.77 0 0 0 0.39518 1 22235 22235 1.8442 0 1 7697 9833 4780 4785 9564 9564 0.09842007739189285 FHRLDRRVL 9 Unmodified _FHRLDRRVL_ 0 0 0 REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|122|3|anti-sense REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|122|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3609008789062 2 606.359631 1210.70471 0.33022 0.00020023 2.5318 0.0015352 2.862 0.0017354 606.3610076858669 29.322 0.093946 29.322 29.281 29.375 0 8 5 2 0 0 0 0.48643 1 4625 4625 2.0598 0.21551 1 219170 + 7698 26079 4781 4786 9565 9565 0.10778429230913389 FHRRVYLK 8 Unmodified _FHRRVYLK_ 0 0 0 REV__L1MC4_dup15462|chr10:58262257-58263104:+|2.1214251578151337|0.0256998628326834|6.37|151.0|55|3|anti-sense REV__L1MC4_dup15462|chr10:58262257-58263104:+|2.1214251578151337|0.0256998628326834|6.37|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_3 7 559.8320922851562 2 559.832717 1117.65088 NaN NaN NaN NaN NaN NaN NaN 47.771 1 51.405 50.905 51.905 3.6339 0 0 0 0.4044 1 9409 9409 4.756 0.81161 1 + 7699 26825 4782 4787 9566 9566 0.09676256799207295 FHRTSMRF 8 Unmodified _FHRTSMRF_ 0 0 0 REV__ENST00000277225.9_3_9:109685683-109685788:+|nuORF REV__ENST00000277225.9_3_9:109685683-109685788:+|nuORF MSMS UPN47_class_I_Rep_2 3 541.2739868164062 2 541.271635 1080.52872 NaN NaN NaN NaN NaN NaN NaN 41.191 1 44.557 44.057 45.057 3.3655 0 0 0 0.40625 1 8277 8277 2.3027 0.4585 1 + 7700 21618 4783 4788 9567 9567 -0.008325282746454832 FHRVPFHR 8 Unmodified _FHRVPFHR_ 0 0 0 ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000579930.5_1_17:25958249-25969437:+|nuORF ENST00000584386.5_1_17:25958291-25974145:+|nuORF ENST00000584386.5_1_17:25958291-25974145:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 548.8026733398438 2 548.301585 1094.58862 0.39189 0.00021487 -3.1902 -0.0017492 -2.7983 -0.0015343 548.2990845694186 69.387 0.076309 72.755 72.706 72.783 3.3678 6 5 2 0 0 0 0.72333 1 16801 16801 0.69038 0 1 21732 7701 4397 4784 4789 9568 9568 0.045105304508979316 FHRVRKAKK 9 Unmodified _FHRVRKAKK_ 0 0 0 REV__L1MEd_dup15251|chr11:78362630-78363059:+|1.035540960623555|0.0037430666212187|8.11|151.0|4|1|sense REV__L1MEd_dup15251|chr11:78362630-78363059:+|1.035540960623555|0.0037430666212187|8.11|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 585.3750610351562 2 585.372541 1168.73053 NaN NaN NaN NaN NaN NaN NaN 25.006 1 28.642 28.142 29.142 3.6363 0 0 0 0.40038 1 2984 2984 0.6015 0 1 + 7702 28537 4785 4790 9569 9569 0.1529132347320683 FHSFFIQLLQ 10 Unmodified _FHSFFIQLLQ_ 0 0 0 REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense MSMS UPN46_class_I_Rep_3 1 640.345947265625 2 640.345323 1278.67609 NaN NaN NaN NaN NaN NaN NaN 102.58 1 102.58 102.08 103.08 0 0 0 0 0.53105 1 25035 25035 1.6526 0 1 + 7703 26996 4786 4791 9570 9570 0.04790266811164656 FHSFFIQLLQ 10 Unmodified _FHSFFIQLLQ_ 0 0 0 REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense MSMS UPN47_class_I_Rep_2 3 640.345458984375 2 640.345323 1278.67609 NaN NaN NaN NaN NaN NaN NaN 100.27 1 103.77 103.27 104.27 3.4974 0 0 0 0.53105 1 24531 24531 1.6526 0 1 + 7704 26996 4786 4791 9571 9571 0.04790266811164656 FHSFFIQLLQ 10 Unmodified _FHSFFIQLLQ_ 0 0 0 REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense MSMS UPN47_class_I_Rep_2 3 640.345947265625 2 640.345323 1278.67609 NaN NaN NaN NaN NaN NaN NaN 100.39 1 103.89 103.39 104.39 3.4991 0 0 0 0.53105 1 24555 24555 3.5965 0 1 + 7705 26996 4786 4791 9572 9572 0.04790266811164656 FHSFFIQLLQ 10 Unmodified _FHSFFIQLLQ_ 0 0 0 REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense MSMS UPN47_class_I_Rep_3 4 640.345947265625 2 640.345323 1278.67609 NaN NaN NaN NaN NaN NaN NaN 98.555 1 101.99 101.49 102.49 3.4328 0 0 0 0.53105 1 24407 24407 1.6526 0 1 + 7706 26996 4786 4791 9573 9573 0.04790266811164656 FHSFFIQLLQ 10 Unmodified _FHSFFIQLLQ_ 0 0 0 REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense MSMS UPN47_class_I_Rep_3 4 640.3458251953125 2 640.345323 1278.67609 NaN NaN NaN NaN NaN NaN NaN 100.41 1 103.88 103.38 104.38 3.4671 0 0 0 0.53105 1 24808 24808 3.5965 0 1 + 7707 26996 4786 4791 9574 9574 0.04790266811164656 FHSFFIQLLQ 10 Unmodified _FHSFFIQLLQ_ 0 0 0 REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense REV__L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|90|3|anti-sense MSMS UPN48_class_I_Rep_3 7 640.3453979492188 2 640.345323 1278.67609 NaN NaN NaN NaN NaN NaN NaN 92.345 1 96.224 95.724 96.724 3.8782 0 0 0 0.53105 1 21895 21895 1.6526 0 1 + 7708 26996 4786 4791 9575 9575 0.04790266811164656 FHVCLWKG 8 Unmodified _FHVCLWKG_ 0 0 0 L1PA13_dup1688|chr3:190523371-190524610:-|1.7556621995711454|0.0113910579365616|7.27|151.0|92|3|anti-sense L1PA13_dup1688|chr3:190523371-190524610:-|1.7556621995711454|0.0113910579365616|7.27|151.0|92|3|anti-sense L1PA13_dup1688|chr3:190523371-190524610:-|1.7556621995711454|0.0113910579365616|7.27|151.0|92|3|anti-sense MSMS UPN48_class_I_Rep_1 5 495.25335693359375 2 495.254923 988.495293 NaN NaN NaN NaN NaN NaN NaN 19.407 1 22.945 22.445 23.445 3.5378 0 0 0 0.40625 1 1466 1466 2.3027 0 1 7709 13739 4787 4792 9576 9576 0.0005846995344427341 FHVCLWKG 8 Unmodified _FHVCLWKG_ 0 0 0 L1PA13_dup1688|chr3:190523371-190524610:-|1.7556621995711454|0.0113910579365616|7.27|151.0|92|3|anti-sense L1PA13_dup1688|chr3:190523371-190524610:-|1.7556621995711454|0.0113910579365616|7.27|151.0|92|3|anti-sense L1PA13_dup1688|chr3:190523371-190524610:-|1.7556621995711454|0.0113910579365616|7.27|151.0|92|3|anti-sense MSMS UPN48_class_I_Rep_1 5 495.2543029785156 2 495.254923 988.495293 NaN NaN NaN NaN NaN NaN NaN 19.652 1 23.19 22.69 23.69 3.5378 0 0 0 0.40604 1 1526 1526 2.5775 0.27475 1 7710 13739 4787 4792 9577 9577 0.0005846995344427341 FHVFARLLRP 10 Unmodified _FHVFARLLRP_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|296|2|anti-sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|296|2|anti-sense MSMS UPN46_class_I_Rep_3 1 628.3751831054688 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 35.108 1 35.108 34.608 35.608 0 0 0 0 0.53105 1 6352 6352 0.45834 0 1 + 7711 30310 4788 4793 9578 9578 0.11776787896133101 FHVGSYSY 8 Unmodified _FHVGSYSY_ 0 0 0 L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|112|3|anti-sense L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|112|3|anti-sense L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|112|3|anti-sense MSMS UPN48_class_I_Rep_3 7 480.2171630859375 2 480.216517 958.418482 NaN NaN NaN NaN NaN NaN NaN 88.318 1 92.128 91.628 92.628 3.8104 0 0 0 0.40738 1 20961 20961 0.79363 0 1 7712 8540 4789 4794 9579 9579 -0.062390500620495004 FHVHHYQH 8 Unmodified _FHVHHYQH_ 0 0 0 THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|77|2|anti-sense THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|77|2|anti-sense THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|77|2|anti-sense MSMS UPN48_class_I_Rep_3 7 552.761474609375 2 552.759749 1103.50495 NaN NaN NaN NaN NaN NaN NaN 40.3 1 43.951 43.451 44.451 3.6509 0 0 0 0.40738 1 7149 7149 0.79363 0.10326 1 7713 32905 4790 4795 9580 9580 -0.04266625716809358 FHWAWLPQ 8 Unmodified _FHWAWLPQ_ 0 0 0 ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B MSMS UPN47_class_I_Rep_3 4 542.773193359375 2 542.771794 1083.52904 NaN NaN NaN NaN NaN NaN NaN 24.989 1 28.34 27.84 28.84 3.3509 0 0 0 0.40738 1 3440 3440 0.79363 0 1 7714 855 4791 4796 9581 9581 -0.009387852831650889 FHWNIYRP 8 Unmodified _FHWNIYRP_ 0 0 0 Tigger1_dup2547|chr3:130866808-130867295:+|3.2295409297504944|0.0333080318500917|6.6|149.0|31|3|anti-sense Tigger1_dup2547|chr3:130866808-130867295:+|3.2295409297504944|0.0333080318500917|6.6|149.0|31|3|anti-sense Tigger1_dup2547|chr3:130866808-130867295:+|3.2295409297504944|0.0333080318500917|6.6|149.0|31|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.789306640625 2 566.787976 1131.5614 NaN NaN NaN NaN NaN NaN NaN 53.03 1 56.225 55.725 56.725 3.1948 0 0 0 0.40604 1 11929 11929 2.5775 0.27475 1 7715 33057 4792 4797 9582 9582 0.0008800211983270856 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.994 1 25.669 25.169 26.169 3.6749 0 0 0 0.40738 1 2482 2482 0.79363 0 1 + 7716 31649 4793 4798 9583 9583 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 22.447 1 26.122 25.622 26.622 3.6749 0 0 0 0.40738 1 2610 2610 0.79363 0 1 + 7717 31649 4793 4798 9584 9584 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2166748046875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 22.618 1 26.322 25.822 26.822 3.7042 0 0 0 0.40738 1 2659 2659 0.79363 0 1 + 7718 31649 4793 4798 9585 9585 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2180786132812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 23.826 1 27.555 27.055 28.055 3.7298 0 0 0 0.40738 1 3012 3012 0.79363 0 1 + 7719 31649 4793 4798 9586 9586 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 25.111 1 28.86 28.36 29.36 3.7495 0 0 0 0.40738 1 3393 3393 0.79363 0 1 + 7720 31649 4793 4798 9587 9587 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 25.691 1 29.453 28.953 29.953 3.7624 0 0 0 0.40738 1 3564 3564 0.79363 0 1 + 7721 31649 4793 4798 9588 9588 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2171630859375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 26.824 1 30.59 30.09 31.09 3.7662 0 0 0 0.40738 1 3896 3896 0.79363 0 1 + 7722 31649 4793 4798 9589 9589 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2176513671875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 27.044 1 30.81 30.31 31.31 3.7662 0 0 0 0.40738 1 3964 3964 0.79363 0 1 + 7723 31649 4793 4798 9590 9590 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 28.415 1 32.182 31.682 32.682 3.7662 0 0 0 0.40738 1 4373 4373 0.79363 0 1 + 7724 31649 4793 4798 9591 9591 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2183837890625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 28.866 1 32.624 32.124 33.124 3.7578 0 0 0 0.40738 1 4506 4506 0.79363 0 1 + 7725 31649 4793 4798 9592 9592 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 29.174 1 32.931 32.431 33.431 3.7578 0 0 0 0.40738 1 4597 4597 0.79363 0 1 + 7726 31649 4793 4798 9593 9593 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.217529296875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 29.538 1 33.296 32.796 33.796 3.7578 0 0 0 0.40738 1 4706 4706 0.79363 0 1 + 7727 31649 4793 4798 9594 9594 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 29.888 1 33.633 33.133 34.133 3.7449 0 0 0 0.40738 1 4811 4811 0.79363 0 1 + 7728 31649 4793 4798 9595 9595 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2168579101562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 30.961 1 34.69 34.19 35.19 3.7293 0 0 0 0.40738 1 5130 5130 0.79363 0 1 + 7729 31649 4793 4798 9596 9596 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.218017578125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 31.523 1 35.253 34.753 35.753 3.7293 0 0 0 0.40738 1 5301 5301 0.79363 0 1 + 7730 31649 4793 4798 9597 9597 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 48.378 1 52.06 51.56 52.56 3.6819 0 0 0 0.40738 1 10431 10431 0.79363 0 1 + 7731 31649 4793 4798 9598 9598 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 51.33 1 54.924 54.424 55.424 3.5932 0 0 0 0.40738 1 11333 11333 0.79363 0 1 + 7732 31649 4793 4798 9599 9599 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.216064453125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 51.923 1 55.517 55.017 56.017 3.5932 0 0 0 0.40738 1 11515 11515 0.79363 0 1 + 7733 31649 4793 4798 9600 9600 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 78.416 1 81.861 81.361 82.361 3.4456 0 0 0 0.40738 1 19495 19495 0.79363 0 1 + 7734 31649 4793 4798 9601 9601 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.216552734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 80.566 1 84.054 83.554 84.554 3.4874 0 0 0 0.40738 1 20071 20071 0.79363 0 1 + 7735 31649 4793 4798 9602 9602 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2181396484375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 84.128 1 87.694 87.194 88.194 3.5655 0 0 0 0.40738 1 21047 21047 0.79363 0 1 + 7736 31649 4793 4798 9603 9603 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 115.32 1 118.92 118.42 119.42 3.5943 0 0 0 0.40738 1 28529 28529 0.79363 0 1 + 7737 31649 4793 4798 9604 9604 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.216552734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 116.12 1 119.72 119.22 120.22 3.5943 0 0 0 0.40738 1 28750 28750 0.79363 0 1 + 7738 31649 4793 4798 9605 9605 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.07 1 120.67 120.17 121.17 3.6036 0 0 0 0.40738 1 29010 29010 0.79363 0 1 + 7739 31649 4793 4798 9606 9606 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2166137695312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.82 1 121.42 120.92 121.92 3.6036 0 0 0 0.40738 1 29217 29217 0.79363 0 1 + 7740 31649 4793 4798 9607 9607 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2169799804688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 118.94 1 122.55 122.05 123.05 3.6036 0 0 0 0.40738 1 29535 29535 0.79363 0 1 + 7741 31649 4793 4798 9608 9608 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.216796875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119.5 1 123.1 122.6 123.6 3.6036 0 0 0 0.40738 1 29696 29696 0.79363 0 1 + 7742 31649 4793 4798 9609 9609 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119.82 1 123.43 122.93 123.93 3.6036 0 0 0 0.40738 1 29791 29791 0.79363 0 1 + 7743 31649 4793 4798 9610 9610 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.007 1 16.395 15.895 16.895 3.388 0 0 0 0.40738 1 212 212 0.79363 0 1 + 7744 31649 4793 4798 9611 9611 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2179565429688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.369 1 16.757 16.257 17.257 3.388 0 0 0 0.40738 1 310 310 0.79363 0 1 + 7745 31649 4793 4798 9612 9612 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.21728515625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.65 1 17.038 16.538 17.538 3.388 0 0 0 0.40738 1 377 377 0.79363 0 1 + 7746 31649 4793 4798 9613 9613 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.856 1 17.243 16.743 17.743 3.3871 0 0 0 0.40738 1 430 430 0.79363 0 1 + 7747 31649 4793 4798 9614 9614 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 14.049 1 17.436 16.936 17.936 3.3871 0 0 0 0.40738 1 477 477 0.79363 0 1 + 7748 31649 4793 4798 9615 9615 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.24 1 24.648 24.148 25.148 3.4074 0 0 0 0.40738 1 2342 2342 0.79363 0 1 + 7749 31649 4793 4798 9616 9616 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2183837890625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.39 1 24.814 24.314 25.314 3.4241 0 0 0 0.40738 1 2382 2382 0.79363 0 1 + 7750 31649 4793 4798 9617 9617 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2183837890625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.806 1 25.23 24.73 25.73 3.4241 0 0 0 0.40738 1 2492 2492 0.79363 0 1 + 7751 31649 4793 4798 9618 9618 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.216552734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.87 1 25.294 24.794 25.794 3.4241 0 0 0 0.40738 1 2511 2511 0.79363 0 1 + 7752 31649 4793 4798 9619 9619 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 28.049 1 31.548 31.048 32.048 3.4986 0 0 0 0.40738 1 4298 4298 0.79363 0 1 + 7753 31649 4793 4798 9620 9620 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2171630859375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 31.092 1 34.561 34.061 35.061 3.4691 0 0 0 0.40738 1 5219 5219 0.79363 0 1 + 7754 31649 4793 4798 9621 9621 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 31.565 1 35.034 34.534 35.534 3.4691 0 0 0 0.40738 1 5359 5359 0.79363 0 1 + 7755 31649 4793 4798 9622 9622 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 31.76 1 35.23 34.73 35.73 3.4691 0 0 0 0.40738 1 5416 5416 0.79363 0 1 + 7756 31649 4793 4798 9623 9623 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2184448242188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 33.34 1 36.78 36.28 37.28 3.4398 0 0 0 0.40738 1 5893 5893 0.79363 0 1 + 7757 31649 4793 4798 9624 9624 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 33.743 1 37.183 36.683 37.683 3.4398 0 0 0 0.40738 1 6015 6015 0.79363 0 1 + 7758 31649 4793 4798 9625 9625 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.218017578125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 41.088 1 44.453 43.953 44.953 3.3655 0 0 0 0.40738 1 8245 8245 0.79363 0 1 + 7759 31649 4793 4798 9626 9626 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 54.705 1 58.024 57.524 58.524 3.3187 0 0 0 0.40738 1 12389 12389 0.79363 0 1 + 7760 31649 4793 4798 9627 9627 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 76.381 1 79.702 79.202 80.202 3.3216 0 0 0 0.40738 1 18906 18906 0.79363 0 1 + 7761 31649 4793 4798 9628 9628 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2778930664062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 89.084 1 92.536 92.036 93.036 3.4525 0 0 0 0.40738 1 22138 22138 0.79363 0.10326 1 + 7762 31649 4793 4798 9629 9629 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 92.828 1 96.297 95.797 96.797 3.4687 0 0 0 0.40738 1 22931 22931 0.79363 0.10326 1 + 7763 31649 4793 4798 9630 9630 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 550.2172241210938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 97.38 1 100.86 100.36 101.36 3.4836 0 0 0 0.40738 1 23908 23908 0.79363 0 1 + 7764 31649 4793 4798 9631 9631 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.038 1 16.412 15.912 16.912 3.3734 0 0 0 0.40738 1 213 213 0.79363 0.10326 1 + 7765 31649 4793 4798 9632 9632 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2169189453125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.283 1 16.656 16.156 17.156 3.3734 0 0 0 0.40738 1 283 283 0.79363 0.10326 1 + 7766 31649 4793 4798 9633 9633 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.45 1 16.824 16.324 17.324 3.3734 0 0 0 0.40738 1 321 321 0.79363 0 1 + 7767 31649 4793 4798 9634 9634 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2179565429688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.95 1 17.319 16.819 17.819 3.3697 0 0 0 0.40738 1 432 432 0.79363 0 1 + 7768 31649 4793 4798 9635 9635 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 14.099 1 17.468 16.968 17.968 3.3697 0 0 0 0.40738 1 471 471 0.79363 0 1 + 7769 31649 4793 4798 9636 9636 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 23.077 1 26.427 25.927 26.927 3.3503 0 0 0 0.40738 1 2871 2871 0.79363 0 1 + 7770 31649 4793 4798 9637 9637 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 23.248 1 26.599 26.099 27.099 3.3503 0 0 0 0.40738 1 2922 2922 0.79363 0 1 + 7771 31649 4793 4798 9638 9638 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.216796875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 24.906 1 28.257 27.757 28.757 3.3509 0 0 0 0.40738 1 3417 3417 0.79363 0 1 + 7772 31649 4793 4798 9639 9639 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 25.96 1 29.308 28.808 29.808 3.3478 0 0 0 0.40738 1 3729 3729 0.79363 0 1 + 7773 31649 4793 4798 9640 9640 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2176513671875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 26.389 1 29.737 29.237 30.237 3.3478 0 0 0 0.40738 1 3853 3853 0.79363 0 1 + 7774 31649 4793 4798 9641 9641 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.218017578125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 30.373 1 33.684 33.184 34.184 3.3116 0 0 0 0.40738 1 5033 5033 0.79363 0 1 + 7775 31649 4793 4798 9642 9642 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2171630859375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 33.71 1 36.985 36.485 37.485 3.2748 0 0 0 0.40738 1 6042 6042 0.79363 0 1 + 7776 31649 4793 4798 9643 9643 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.216796875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 37.615 1 40.856 40.356 41.356 3.2414 0 0 0 0.40738 1 7233 7233 0.79363 0 1 + 7777 31649 4793 4798 9644 9644 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2174072265625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 38.269 1 41.511 41.011 42.011 3.2414 0 0 0 0.40738 1 7431 7431 0.79363 0 1 + 7778 31649 4793 4798 9645 9645 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 41.469 1 44.707 44.207 45.207 3.2372 0 0 0 0.40738 1 8415 8415 0.79363 0 1 + 7779 31649 4793 4798 9646 9646 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 41.593 1 44.83 44.33 45.33 3.2372 0 0 0 0.40738 1 8451 8451 0.79363 0 1 + 7780 31649 4793 4798 9647 9647 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 68.032 1 71.229 70.729 71.729 3.1977 0 0 0 0.40738 1 16506 16506 0.79363 0 1 + 7781 31649 4793 4798 9648 9648 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.21728515625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 68.768 1 71.965 71.465 72.465 3.1977 0 0 0 0.40738 1 16729 16729 0.79363 0 1 + 7782 31649 4793 4798 9649 9649 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 549.8125610351562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 71.316 1 74.535 74.035 75.035 3.2188 0 0 0 0.40738 1 17491 17491 0.79363 0.10326 1 + 7783 31649 4793 4798 9650 9650 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.21728515625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 72.471 1 75.698 75.198 76.198 3.2271 0 0 0 0.40738 1 17841 17841 0.79363 0 1 + 7784 31649 4793 4798 9651 9651 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2188110351562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 76.414 1 79.671 79.171 80.171 3.2573 0 0 0 0.40738 1 18997 18997 0.79363 0 1 + 7785 31649 4793 4798 9652 9652 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 549.7913818359375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 80.927 1 84.25 83.75 84.75 3.3231 0 0 0 0.40738 1 20245 20245 0.79363 0.10326 1 + 7786 31649 4793 4798 9653 9653 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2169799804688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 86.668 1 90.048 89.548 90.548 3.3801 0 0 0 0.40738 1 21722 21722 0.79363 0 1 + 7787 31649 4793 4798 9654 9654 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 86.999 1 90.379 89.879 90.879 3.3801 0 0 0 0.40738 1 21803 21803 0.79363 0 1 + 7788 31649 4793 4798 9655 9655 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 87.476 1 90.863 90.363 91.363 3.3873 0 0 0 0.40738 1 21920 21920 0.79363 0 1 + 7789 31649 4793 4798 9656 9656 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2183837890625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 90.214 1 93.611 93.111 94.111 3.3976 0 0 0 0.40738 1 22612 22612 0.79363 0.10326 1 + 7790 31649 4793 4798 9657 9657 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 111.43 1 114.95 114.45 115.45 3.5207 0 0 0 0.40738 1 27353 27353 0.79363 0 1 + 7791 31649 4793 4798 9658 9658 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 113.03 1 116.54 116.04 117.04 3.5098 0 0 0 0.40738 1 27718 27718 0.79363 0 1 + 7792 31649 4793 4798 9659 9659 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2172241210938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 113.69 1 117.19 116.69 117.69 3.4963 0 0 0 0.40738 1 27895 27895 0.79363 0 1 + 7793 31649 4793 4798 9660 9660 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2169189453125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 116.04 1 119.51 119.01 120.01 3.462 0 0 0 0.40738 1 28548 28548 0.79363 0 1 + 7794 31649 4793 4798 9661 9661 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 116.32 1 119.78 119.28 120.28 3.462 0 0 0 0.40738 1 28620 28620 0.79363 0 1 + 7795 31649 4793 4798 9662 9662 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2166748046875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.22 1 120.66 120.16 121.16 3.4425 0 0 0 0.40738 1 28872 28872 0.79363 0 1 + 7796 31649 4793 4798 9663 9663 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.48 1 120.92 120.42 121.42 3.4425 0 0 0 0.40738 1 28946 28946 0.79363 0 1 + 7797 31649 4793 4798 9664 9664 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2172241210938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 118.74 1 122.16 121.66 122.66 3.4238 0 0 0 0.40738 1 29297 29297 0.79363 0.10326 1 + 7798 31649 4793 4798 9665 9665 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2174072265625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119.7 1 123.11 122.61 123.61 3.4157 0 0 0 0.40738 1 29570 29570 0.79363 0 1 + 7799 31649 4793 4798 9666 9666 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2181396484375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 15.637 1 19.155 18.655 19.655 3.5184 0 0 0 0.40738 1 648 648 0.79363 0.10326 1 + 7800 31649 4793 4798 9667 9667 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 16.746 1 20.268 19.768 20.768 3.5217 0 0 0 0.40738 1 867 867 0.79363 0 1 + 7801 31649 4793 4798 9668 9668 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2186889648438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 18.704 1 22.236 21.736 22.736 3.5313 0 0 0 0.40738 1 1302 1302 0.79363 0 1 + 7802 31649 4793 4798 9669 9669 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2169799804688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.484 1 25.037 24.537 25.537 3.5533 0 0 0 0.40738 1 1970 1970 0.79363 0 1 + 7803 31649 4793 4798 9670 9670 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 23.002 1 26.562 26.062 27.062 3.5605 0 0 0 0.40738 1 2332 2332 0.79363 0.10326 1 + 7804 31649 4793 4798 9671 9671 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 549.7962036132812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 34.889 1 38.403 37.903 38.903 3.5144 0 0 0 0.40738 1 5638 5638 0.79363 0 1 + 7805 31649 4793 4798 9672 9672 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2986450195312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 35.242 1 38.757 38.257 39.257 3.5144 0 0 0 0.40738 1 5740 5740 0.79363 0.10326 1 + 7806 31649 4793 4798 9673 9673 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 549.8160400390625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 37.419 1 40.926 40.426 41.426 3.5067 0 0 0 0.40738 1 6362 6362 0.79363 0 1 + 7807 31649 4793 4798 9674 9674 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.3355102539062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 54.867 1 58.375 57.875 58.875 3.5082 0 0 0 0.40738 1 11658 11658 0.79363 0 1 + 7808 31649 4793 4798 9675 9675 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.218017578125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 69.487 1 72.942 72.442 73.442 3.4548 0 0 0 0.40738 1 16124 16124 0.79363 0 1 + 7809 31649 4793 4798 9676 9676 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2179565429688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 69.92 1 73.38 72.88 73.88 3.4598 0 0 0 0.40738 1 16255 16255 0.79363 0 1 + 7810 31649 4793 4798 9677 9677 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.3145141601562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 72.566 1 76.039 75.539 76.539 3.4732 0 0 0 0.40738 1 17039 17039 0.79363 0 1 + 7811 31649 4793 4798 9678 9678 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.3148803710938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 73.891 1 77.373 76.873 77.873 3.4812 0 0 0 0.40738 1 17438 17438 0.79363 0 1 + 7812 31649 4793 4798 9679 9679 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 73.945 1 77.427 76.927 77.927 3.4812 0 0 0 0.40738 1 17454 17454 0.79363 0 1 + 7813 31649 4793 4798 9680 9680 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2166748046875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 80.986 1 84.548 84.048 85.048 3.5624 0 0 0 0.40738 1 19304 19304 0.79363 0.10326 1 + 7814 31649 4793 4798 9681 9681 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 111.57 1 115.2 114.7 115.7 3.6326 0 0 0 0.40738 1 27065 27065 0.79363 0 1 + 7815 31649 4793 4798 9682 9682 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 111.93 1 115.56 115.06 116.06 3.6321 0 0 0 0.40738 1 27154 27154 0.79363 0.10326 1 + 7816 31649 4793 4798 9683 9683 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 112.89 1 116.52 116.02 117.02 3.6321 0 0 0 0.40738 1 27410 27410 0.79363 0 1 + 7817 31649 4793 4798 9684 9684 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.217041015625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 114.99 1 118.62 118.12 119.12 3.6301 0 0 0 0.40738 1 27967 27967 0.79363 0 1 + 7818 31649 4793 4798 9685 9685 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.216552734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 115.86 1 119.49 118.99 119.99 3.6282 0 0 0 0.40738 1 28199 28199 0.79363 0 1 + 7819 31649 4793 4798 9686 9686 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 115.99 1 119.62 119.12 120.12 3.6282 0 0 0 0.40738 1 28234 28234 0.79363 0.10326 1 + 7820 31649 4793 4798 9687 9687 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2176513671875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 116.29 1 119.92 119.42 120.42 3.6254 0 0 0 0.40738 1 28312 28312 0.79363 0 1 + 7821 31649 4793 4798 9688 9688 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2182006835938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.22 1 120.84 120.34 121.34 3.6215 0 0 0 0.40738 1 28563 28563 0.79363 0 1 + 7822 31649 4793 4798 9689 9689 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 118.29 1 121.91 121.41 122.41 3.6211 0 0 0 0.40738 1 28848 28848 0.79363 0 1 + 7823 31649 4793 4798 9690 9690 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 118.75 1 122.37 121.87 122.87 3.6189 0 0 0 0.40738 1 28971 28971 0.79363 0 1 + 7824 31649 4793 4798 9691 9691 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2179565429688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119.42 1 123.04 122.54 123.54 3.6189 0 0 0 0.40738 1 29147 29147 0.79363 0 1 + 7825 31649 4793 4798 9692 9692 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2169189453125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119.96 1 123.58 123.08 124.08 3.6189 0 0 0 0.40738 1 29290 29290 0.79363 0 1 + 7826 31649 4793 4798 9693 9693 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 15.543 1 19.197 18.697 19.697 3.6535 0 0 0 0.40738 1 649 649 0.79363 0 1 + 7827 31649 4793 4798 9694 9694 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 18.904 1 22.555 22.055 23.055 3.6509 0 0 0 0.40738 1 1344 1344 0.79363 0 1 + 7828 31649 4793 4798 9695 9695 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 20.937 1 24.585 24.085 25.085 3.648 0 0 0 0.40738 1 1890 1890 0.79363 0 1 + 7829 31649 4793 4798 9696 9696 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.21728515625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 21.354 1 25 24.5 25.5 3.6459 0 0 0 0.40738 1 2002 2002 0.79363 0 1 + 7830 31649 4793 4798 9697 9697 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 22.831 1 26.474 25.974 26.974 3.6432 0 0 0 0.40738 1 2393 2393 0.79363 0 1 + 7831 31649 4793 4798 9698 9698 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2181396484375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 28 1 31.631 31.131 32.131 3.6311 0 0 0 0.40738 1 3795 3795 0.79363 0 1 + 7832 31649 4793 4798 9699 9699 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2164916992188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 28.925 1 32.557 32.057 33.057 3.6316 0 0 0 0.40738 1 4041 4041 0.79363 0 1 + 7833 31649 4793 4798 9700 9700 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2174072265625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 29.785 1 33.417 32.917 33.917 3.6316 0 0 0 0.40738 1 4278 4278 0.79363 0 1 + 7834 31649 4793 4798 9701 9701 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 30.091 1 33.726 33.226 34.226 3.6351 0 0 0 0.40738 1 4355 4355 0.79363 0 1 + 7835 31649 4793 4798 9702 9702 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 34.633 1 38.306 37.806 38.806 3.6735 0 0 0 0.40738 1 5604 5604 0.79363 0.10326 1 + 7836 31649 4793 4798 9703 9703 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2176513671875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 35.066 1 38.74 38.24 39.24 3.6735 0 0 0 0.40738 1 5731 5731 0.79363 0 1 + 7837 31649 4793 4798 9704 9704 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 38.226 1 41.943 41.443 42.443 3.7164 0 0 0 0.40738 1 6635 6635 0.79363 0 1 + 7838 31649 4793 4798 9705 9705 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 39.92 1 43.662 43.162 44.162 3.7413 0 0 0 0.40738 1 7136 7136 0.79363 0 1 + 7839 31649 4793 4798 9706 9706 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 40.474 1 44.216 43.716 44.716 3.7413 0 0 0 0.40738 1 7289 7289 0.79363 0 1 + 7840 31649 4793 4798 9707 9707 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2177124023438 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 41.397 1 45.147 44.647 45.647 3.7508 0 0 0 0.40581 1 7558 7558 2.8892 2.0956 1 + 7841 31649 4793 4798 9708 9708 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 46.039 1 49.797 49.297 50.297 3.7579 0 0 0 0.40738 1 8952 8952 0.79363 0 1 + 7842 31649 4793 4798 9709 9709 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 46.172 1 49.93 49.43 50.43 3.7579 0 0 0 0.40738 1 8993 8993 0.79363 0 1 + 7843 31649 4793 4798 9710 9710 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 47.677 1 51.413 50.913 51.913 3.7361 0 0 0 0.40738 1 9443 9443 0.79363 0.10326 1 + 7844 31649 4793 4798 9711 9711 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2176513671875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 47.877 1 51.613 51.113 52.113 3.7361 0 0 0 0.40738 1 9505 9505 0.79363 0 1 + 7845 31649 4793 4798 9712 9712 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.21728515625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 48.144 1 51.88 51.38 52.38 3.7361 0 0 0 0.40738 1 9587 9587 0.79363 0 1 + 7846 31649 4793 4798 9713 9713 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2169189453125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 55.813 1 59.369 58.869 59.869 3.5559 0 0 0 0.40738 1 11930 11930 0.79363 0 1 + 7847 31649 4793 4798 9714 9714 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 67.29 1 70.786 70.286 71.286 3.4964 0 0 0 0.40738 1 15440 15440 0.79363 0 1 + 7848 31649 4793 4798 9715 9715 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 79.513 1 83.146 82.646 83.646 3.6331 0 0 0 0.40738 1 18893 18893 0.79363 0 1 + 7849 31649 4793 4798 9716 9716 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 82.463 1 86.131 85.631 86.631 3.669 0 0 0 0.40738 1 19588 19588 0.79363 0.10326 1 + 7850 31649 4793 4798 9717 9717 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.217529296875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 101.61 1 105.33 104.83 105.83 3.7252 0 0 0 0.40738 1 24096 24096 0.79363 0 1 + 7851 31649 4793 4798 9718 9718 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 101.76 1 105.48 104.98 105.98 3.7252 0 0 0 0.40738 1 24127 24127 0.79363 0 1 + 7852 31649 4793 4798 9719 9719 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 111.23 1 114.9 114.4 115.4 3.6666 0 0 0 0.40738 1 26460 26460 0.79363 0 1 + 7853 31649 4793 4798 9720 9720 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2166137695312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 113.15 1 116.81 116.31 117.31 3.6648 0 0 0 0.40738 1 26990 26990 0.79363 0 1 + 7854 31649 4793 4798 9721 9721 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 114.91 1 118.57 118.07 119.07 3.6616 0 0 0 0.40738 1 27486 27486 0.79363 0 1 + 7855 31649 4793 4798 9722 9722 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 115.5 1 119.16 118.66 119.66 3.6607 0 0 0 0.40738 1 27645 27645 0.79363 0 1 + 7856 31649 4793 4798 9723 9723 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 115.78 1 119.44 118.94 119.94 3.6607 0 0 0 0.40738 1 27721 27721 0.79363 0 1 + 7857 31649 4793 4798 9724 9724 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 116.01 1 119.68 119.18 120.18 3.6607 0 0 0 0.40738 1 27781 27781 0.79363 0.10326 1 + 7858 31649 4793 4798 9725 9725 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2174072265625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 116.83 1 120.49 119.99 120.99 3.6607 0 0 0 0.40738 1 27990 27990 0.79363 0 1 + 7859 31649 4793 4798 9726 9726 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.216552734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.16 1 120.82 120.32 121.32 3.6607 0 0 0 0.40738 1 28072 28072 0.79363 0 1 + 7860 31649 4793 4798 9727 9727 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.32 1 120.98 120.48 121.48 3.6607 0 0 0 0.40738 1 28116 28116 0.79363 0 1 + 7861 31649 4793 4798 9728 9728 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2172241210938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.62 1 121.28 120.78 121.78 3.6609 0 0 0 0.40738 1 28193 28193 0.79363 0 1 + 7862 31649 4793 4798 9729 9729 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.216796875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 117.93 1 121.59 121.09 122.09 3.6627 0 0 0 0.40738 1 28269 28269 0.79363 0 1 + 7863 31649 4793 4798 9730 9730 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2177734375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 118.2 1 121.86 121.36 122.36 3.6627 0 0 0 0.40738 1 28336 28336 0.79363 0 1 + 7864 31649 4793 4798 9731 9731 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.218017578125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 118.69 1 122.35 121.85 122.85 3.6627 0 0 0 0.40738 1 28465 28465 0.79363 0 1 + 7865 31649 4793 4798 9732 9732 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2166137695312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119 1 122.67 122.17 123.17 3.6652 0 0 0 0.40738 1 28549 28549 0.79363 0 1 + 7866 31649 4793 4798 9733 9733 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 119.23 1 122.9 122.4 123.4 3.6652 0 0 0 0.40738 1 28612 28612 0.79363 0 1 + 7867 31649 4793 4798 9734 9734 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2174072265625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.427 1 16.959 16.459 17.459 3.5314 0 0 0 0.40738 1 248 248 0.79363 0.10326 1 + 7868 31649 4793 4798 9735 9735 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2182006835938 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 13.683 1 17.215 16.715 17.715 3.5314 0 0 0 0.40738 1 292 292 0.79363 0 1 + 7869 31649 4793 4798 9736 9736 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.217529296875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 19.743 1 23.365 22.865 23.865 3.6215 0 0 0 0.40738 1 1550 1550 0.79363 0 1 + 7870 31649 4793 4798 9737 9737 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2178344726562 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 20.003 1 23.624 23.124 24.124 3.6215 0 0 0 0.40738 1 1619 1619 0.79363 0 1 + 7871 31649 4793 4798 9738 9738 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2174682617188 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 20.614 1 24.281 23.781 24.781 3.6667 0 0 0 0.40738 1 1789 1789 0.79363 0 1 + 7872 31649 4793 4798 9739 9739 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2169799804688 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 35.087 1 38.76 38.26 39.26 3.6721 0 0 0 0.40738 1 5647 5647 0.79363 0 1 + 7873 31649 4793 4798 9740 9740 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2171020507812 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 36.677 1 40.34 39.84 40.84 3.663 0 0 0 0.40738 1 6096 6096 0.79363 0 1 + 7874 31649 4793 4798 9741 9741 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.218017578125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 36.959 1 40.622 40.122 41.122 3.663 0 0 0 0.40738 1 6177 6177 0.79363 0 1 + 7875 31649 4793 4798 9742 9742 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2181396484375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 41.681 1 45.327 44.827 45.827 3.6458 0 0 0 0.40738 1 7557 7557 0.79363 0 1 + 7876 31649 4793 4798 9743 9743 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 46.441 1 50.077 49.577 50.577 3.6363 0 0 0 0.40738 1 9007 9007 0.79363 0 1 + 7877 31649 4793 4798 9744 9744 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2175903320312 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 47.158 1 50.795 50.295 51.295 3.6363 0 0 0 0.40738 1 9227 9227 0.79363 0 1 + 7878 31649 4793 4798 9745 9745 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2176513671875 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 48.237 1 51.871 51.371 52.371 3.6339 0 0 0 0.40738 1 9554 9554 0.79363 0 1 + 7879 31649 4793 4798 9746 9746 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2173461914062 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 63.375 1 66.884 66.384 67.384 3.5091 0 0 0 0.40738 1 14164 14164 0.79363 0 1 + 7880 31649 4793 4798 9747 9747 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2178955078125 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 64.768 1 68.276 67.776 68.776 3.5083 0 0 0 0.40738 1 14584 14584 0.79363 0 1 + 7881 31649 4793 4798 9748 9748 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2181396484375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 81.848 1 85.533 85.033 86.033 3.685 0 0 0 0.40738 1 19391 19391 0.79363 0 1 + 7882 31649 4793 4798 9749 9749 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 549.80322265625 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 102.25 1 106.02 105.52 106.52 3.776 0 0 0 0.40738 1 24162 24162 0.79363 0 1 + 7883 31649 4793 4798 9750 9750 -0.12486035849451582 FHWWFACC 8 Unmodified _FHWWFACC_ 0 0 0 REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense REV__MLT1C_dup5912|chr5:70846664-70847060:+|1.3057489870040164|0.0572853519782225|4.51|146.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2171630859375 2 550.217483 1098.42041 NaN NaN NaN NaN NaN NaN NaN 113.81 1 117.46 116.96 117.96 3.6511 0 0 0 0.40738 1 27073 27073 0.79363 0 1 + 7884 31649 4793 4798 9751 9751 -0.12486035849451582 FHWYIYLFWYQ 11 Unmodified _FHWYIYLFWYQ_ 0 0 0 L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|174|1|anti-sense L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|174|1|anti-sense L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|174|1|anti-sense MSMS UPN46_class_I_Rep_3 1 555.9337768554688 3 555.934484 1664.78162 NaN NaN NaN NaN NaN NaN NaN 40.192 1 40.192 39.692 40.692 0 0 0 0 0.38417 1 7784 7784 0.08335 0 1 7885 14832 4794 4799 9752 9752 -0.024178170632694673 FHYKLFDY 8 Unmodified _FHYKLFDY_ 0 0 0 REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|74|3|anti-sense REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|74|3|anti-sense MSMS UPN47_class_I_Rep_2 3 566.7750244140625 2 566.776742 1131.53893 NaN NaN NaN NaN NaN NaN NaN 74.199 1 77.504 77.004 78.004 3.3048 0 0 0 0.40604 1 18275 18275 2.5775 0.27475 1 + 7886 27851 4795 4800 9753 9753 -0.021576420684368713 FHYPHFVRL 9 Unmodified _FHYPHFVRL_ 0 0 0 REV__ENSG00000140481|ENST00000398814|CCDC33 REV__ENSG00000140481|ENST00000398814|CCDC33 MSMS UPN48_class_I_Rep_1 5 405.8839416503906 3 405.885576 1214.6349 NaN NaN NaN NaN NaN NaN NaN 68.541 1 71.993 71.493 72.493 3.4517 0 0 0 0.39841 1 15835 15835 1.0715 0.10919 1 + 7887 19344 4796 4801 9754 9754 0.03616550562333032 FIADHCPT 8 Unmodified _FIADHCPT_ 0 0 0 ENST00000392357.1_1_17:80010993-80011926:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1 ENST00000392357.1_1_17:80010993-80011926:+|nuORF ENST00000392357.1_1_17:80010993-80011926:+|nuORF MSMS UPN47_class_I_Rep_2 3 452.2044677734375 2 452.205096 902.395638 NaN NaN NaN NaN NaN NaN NaN 33.441 1 36.881 36.381 37.381 3.4398 0 0 0 0.40746 1 5924 5924 0.69038 0 1 7888 4435 4797 4802 9755 9755 -0.059463924511760524 FIAEGSSSESY 11 Unmodified _FIAEGSSSESY_ 0 0 0 L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|48|1|anti-sense L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|48|1|anti-sense L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_2 3 588.757568359375 2 588.756401 1175.49825 NaN NaN NaN NaN NaN NaN NaN 56.901 1 60.201 59.701 60.701 3.3009 0 0 0 0.34415 1 13061 13061 9.3831 0 1 7889 11406 4798 4803 9756 9756 -0.08248072969354325 FIAHWKRR 8 Unmodified _FIAHWKRR_ 0 0 0 REV__L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|30|1|sense REV__L1MA4A_dup3287|chr9:85602599-85606114:+|3.834854363042317|0.0677125054589473|5.82|151.0|30|1|sense MSMS UPN48_class_I_Rep_2 6 557.24169921875 2 557.32506 1112.63557 NaN NaN NaN NaN NaN NaN NaN 57.403 1 60.917 60.417 61.417 3.5142 0 0 0 0.40404 1 12412 12412 5.2307 1.2863 1 + 7890 25267 4799 4804 9757 9757 0.0837539000203833 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 618.329833984375 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 46.074 1 49.593 49.093 50.093 3.5192 0 0 0 0.39518 1 8956 8956 1.8442 0.36234 1 7891 13629 4800 4805 9758 9758 0.04193997639663394 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 618.3287963867188 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 45.525 1 49.283 48.783 49.783 3.7579 0 0 0 0.39518 1 8798 8798 1.8442 0.19162 1 7892 13629 4800 4805 9759 9759 0.04193997639663394 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 618.3329467773438 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 45.706 1 49.464 48.964 49.964 3.7579 0 0 0 0.39518 1 8850 8850 1.8442 0.36234 1 7893 13629 4800 4805 9760 9760 0.04193997639663394 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 618.3308715820312 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 46.29 1 50.039 49.539 50.539 3.7494 0 0 0 0.39518 1 9029 9029 1.8442 0.36234 1 7894 13629 4800 4805 9761 9761 0.04193997639663394 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 618.3340454101562 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 45.618 1 49.255 48.755 49.755 3.6369 0 0 0 0.39518 1 8755 8755 1.8442 0.19162 1 7895 13629 4800 4805 9762 9762 0.04193997639663394 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 618.3309326171875 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 45.634 1 49.271 48.771 49.771 3.6369 0 0 0 0.39518 1 8760 8760 1.8442 0.36234 1 7896 13629 4800 4805 9763 9763 0.04193997639663394 FIAKFYQRY 9 Unmodified _FIAKFYQRY_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense;L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|64|2|sense;L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|63|2|sense;L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|34|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 618.33056640625 2 618.332216 1234.64988 NaN NaN NaN NaN NaN NaN NaN 46.527 1 50.163 49.663 50.663 3.6363 0 0 0 0.39518 1 9033 9033 1.8442 0.36234 1 7897 13629 4800 4805 9764 9764 0.04193997639663394 FIALHVGF 8 Unmodified _FIALHVGF_ 0 0 0 REV__ENST00000509314.5_1_4:15661362-15661458:-|nuORF REV__ENST00000509314.5_1_4:15661362-15661458:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 452.2575378417969 2 452.257988 902.501424 0.066026 2.9861E-05 -0.17151 -7.7568E-05 -0.10549 -4.7707E-05 452.25775457674354 49.757 0.69672 53.378 53.073 53.769 3.621 70 46 2 0 0 0 0.82752 1 10016 10016 6.3541 0 1 126960 + 7898 22729 4801 4806 9765 9765 0.0462731145661337 FIALSRTFLKL 11 Unmodified _FIALSRTFLKL_ 0 0 0 Charlie1a_dup67|chr1:28412032-28412766:-|1.96512853217934|0.0312130719524469|5.98|151.0|34|1|anti-sense Charlie1a_dup67|chr1:28412032-28412766:-|1.96512853217934|0.0312130719524469|5.98|151.0|34|1|anti-sense Charlie1a_dup67|chr1:28412032-28412766:-|1.96512853217934|0.0312130719524469|5.98|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 436.9396667480469 3 436.939458 1307.79654 NaN NaN NaN NaN NaN NaN NaN 45.38 1 49.138 48.638 49.638 3.7579 0 0 0 0.38417 1 8753 8753 2.6312 0 1 7899 493 4802 4807 9766 9766 0.1549567480474252 FIANVTHTF 9 Unmodified _FIANVTHTF_ 0 0 0 ENST00000414718.1_1_20:12360810-12361446:+|nuORF;ENST00000577406.1_1_18:25032813-25033479:-|nuORF ENST00000414718.1_1_20:12360810-12361446:+|nuORF ENST00000414718.1_1_20:12360810-12361446:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 525.2736206054688 2 525.274367 1048.53418 0.49933 0.00026229 0.0070852 3.7217E-06 0.50642 0.00026601 525.2745196977371 70.224 0.54219 73.737 73.466 74.008 3.5128 55 47 2 0 0 0 0.42249 1 16280 16280 6.7232 0.51738 1 69731 7900 6641 4803 4808 9767 9767 0.01185473788791569 FIAPTGHSL 9 Unmodified _FIAPTGHSL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN46_class_I_Rep_3 1 471.7558288574219 2 471.75581 941.497067 0.19965 9.4188E-05 -0.1112 -5.246E-05 0.088452 4.1728E-05 471.75565038158027 48.08 0.92013 48.08 47.763 48.683 0 237 96 3 0 0 0 0.074367 2 9993 9993;10029 39.957 5.8549 1 1890000 7901 2500 4804 4809 9768;9769 9768 0.023978022430469537 FIAPTGHSL 9 Unmodified _FIAPTGHSL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN48_class_I_Rep_1 5 471.7555847167969 2 471.75581 941.497067 0.09555 4.5076E-05 -0.13693 -6.4596E-05 -0.041377 -1.952E-05 471.75564918642584 43.508 1.0507 47.019 46.693 47.744 3.5103 195 86 3 0 0 0 0.090595 3 8137 8137;8175;8214 36.044 5.8194 1 891460 7902 2500 4804 4809 9770;9771;9772 9770 0.023978022430469537 FIAPTGHSL 9 Unmodified _FIAPTGHSL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN48_class_I_Rep_2 6 471.7557373046875 2 471.75581 941.497067 0.13927 6.5704E-05 -0.1628 -7.6801E-05 -0.023524 -1.1097E-05 471.75566100230026 43.223 1.0813 46.984 46.614 47.695 3.7617 182 83 3 0 0 0 0.066041 2 8097 8057;8097 42.095 6.0504 1 873250 7903 2500 4804 4809 9773;9774 9774 0.023978022430469537 FIAPTGHSL 9 Unmodified _FIAPTGHSL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN48_class_I_Rep_3 7 471.7557678222656 2 471.75581 941.497067 0.12317 5.8106E-05 -0.21797 -0.00010283 -0.094803 -4.4724E-05 471.75564550411383 43.407 1.089 47.045 46.654 47.743 3.6385 195 80 3 0 0 0 0.029391 3 8066 8027;8066;8104 57.471 6.6163 1 1069100 7904 2500 4804 4809 9775;9776;9777 9776 0.023978022430469537 FIAPTGHSL 9 Unmodified _FIAPTGHSL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MATCH UPN47_class_I_Rep_2 3 2 471.75581 941.497067 -0.16984 -8.0122E-05 -0.68308 -0.00032225 -0.85292 -0.00040237 471.7556768630479 44.738 0.070473 48.093 48.049 48.119 3.3555 -0.033804 -0.00053496 NaN 39.957 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 28343 7905 2500 4804 4809 0.023978022430469537 FIAPTGHSL 9 Unmodified _FIAPTGHSL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MATCH UPN48_class_I_Rep_3 7 2 471.75581 941.497067 0.12469 5.8823E-05 -0.41698 -0.00019671 -0.29229 -0.00013789 471.75567239874744 44.571 0.075493 48.208 48.164 48.239 3.6372 0.081294 -0.0002839 NaN 39.957 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 35240 7906 2500 4804 4809 0.023978022430469537 FIATKGNHTW 10 Unmodified _FIATKGNHTW_ 0 0 0 PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.8045043945312 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.32646 1 8077 8077 26.268 2.2476 1 966840 7907 16891 4805 4810 9778 9778 0.013239500831332407 FIATKGNHTW 10 Unmodified _FIATKGNHTW_ 0 0 0 PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense MSMS UPN48_class_I_Rep_3 7 587.8029174804688 2 587.803823 1173.59309 NaN NaN NaN NaN NaN NaN NaN 44.167 1 47.806 47.306 48.306 3.6385 0 0 0 0.53105 1 8309 8309 2.7352 0.43246 1 7908 16891 4805 4810 9779 9779 0.013239500831332407 FIATKGNHTW 10 Unmodified _FIATKGNHTW_ 0 0 0 PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|43|1|anti-sense MSMS UPN48_class_I_Rep_3 7 587.8048095703125 2 587.803823 1173.59309 NaN NaN NaN NaN NaN NaN NaN 44.335 1 47.972 47.472 48.472 3.6372 0 0 0 0.53105 1 8361 8361 2.4985 0.19575 1 7909 16891 4805 4810 9780 9780 0.013239500831332407 FICFNALHLT 10 Unmodified _FICFNALHLT_ 0 0 0 REV__AluJo_dup25929|chr6:135213600-135213891:+|2.527815560960367|0.0282514939298023|6.48|151.0|16|2|anti-sense REV__AluJo_dup25929|chr6:135213600-135213891:+|2.527815560960367|0.0282514939298023|6.48|151.0|16|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.8038940429688 2 589.804977 1177.5954 -0.43845 -0.0002586 -1.3006 -0.00076707 -1.739 -0.0010257 589.8039529770489 13.074 0.10043 16.448 16.406 16.507 3.3734 14 10 2 0 0 0 0.56309 1 237 237 1.6526 0.17072 1 22256 + 7910 16992 4806 4811 9781 9781 0.013706624965607261 FICIGFACD 9 Unmodified _FICIGFACD_ 0 0 0 REV__L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|204|3|anti-sense REV__L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|204|3|anti-sense MSMS UPN47_class_I_Rep_1 2 494.71929931640625 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 24.421 1 28.15 27.65 28.65 3.7298 0 0 0 0.39428 1 3188 3188 2.0598 1.2661 1 + 7911 26566 4807 4812 9782 9782 -0.07480295009008842 FICPLMHEN 9 Unmodified _FICPLMHEN_ 0 0 0 REV__L1PA10_dup1894|chr4:159115666-159117030:+|1.356729179787186|0.0366971402752649|5.21|151.0|79|3|anti-sense REV__L1PA10_dup1894|chr4:159115666-159117030:+|1.356729179787186|0.0366971402752649|5.21|151.0|79|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.2536010742188 2 552.254262 1102.49397 -0.0032838 -1.8135E-06 -1.2563 -0.00069378 -1.2595 -0.00069559 552.2538861362603 38.63 0.64134 42.295 42.034 42.675 3.6652 85 43 3 0 0 0 0.3898 1 7529 7529 8.5933 0.68312 1 153020 + 7912 28943 4808 4813 9783 9783 -0.05317532197614128 FICPLMHEN 9 Unmodified _FICPLMHEN_ 0 0 0 REV__L1PA10_dup1894|chr4:159115666-159117030:+|1.356729179787186|0.0366971402752649|5.21|151.0|79|3|anti-sense REV__L1PA10_dup1894|chr4:159115666-159117030:+|1.356729179787186|0.0366971402752649|5.21|151.0|79|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.25537109375 2 552.254262 1102.49397 -0.0534 -2.9491E-05 -0.87748 -0.00048459 -0.93088 -0.00051408 552.254060772212 38.993 0.78327 42.231 42.016 42.799 3.238 86 54 2 0 0 0 0.30667 2 7742 7699;7742 13.508 0.97634 1 143240 + 7913 28943 4808 4813 9784;9785 9785 -0.05317532197614128 FICVYLYLFA 10 Unmodified _FICVYLYLFA_ 0 0 0 REV__L1MEc_dup18080|chr21:45215613-45218470:-|1.3981196151557458|0.3316930475839145|2.08|151.0|167|2|anti-sense REV__L1MEc_dup18080|chr21:45215613-45218470:-|1.3981196151557458|0.3316930475839145|2.08|151.0|167|2|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3260498046875 2 626.327753 1250.64095 NaN NaN NaN NaN NaN NaN NaN 48.09 1 51.612 51.112 52.112 3.5219 0 0 0 0.53105 1 9574 9574 1.8442 0.19162 1 + 7914 28419 4809 4814 9786 9786 0.025658879589400385 FIDAQFEAY 9 Unmodified _FIDAQFEAY_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN47_class_I_Rep_1 2 552.2559814453125 2 552.25584 1102.49713 0.37185 0.00020536 0.26692 0.00014741 0.63878 0.00035277 552.2557764578696 66.662 0.74594 70.02 69.711 70.457 3.3576 110 52 3 0 0 0 0.05757 3 15981 15933;15981;16021 45.74 13.434 1 304450 7915 2500 4810 4815 9787;9788;9789 9788 -0.050022425476072385 FIDAQFEAY 9 Unmodified _FIDAQFEAY_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN47_class_I_Rep_2 3 552.2564086914062 2 552.25584 1102.49713 0.36993 0.0002043 0.064504 3.5623E-05 0.43443 0.00023992 552.2557597077138 66.858 0.78513 70.121 69.852 70.637 3.2636 110 58 2 0 0 0 0.022868 3 16107 16067;16107;16146 61.602 21.645 1 330250 7916 2500 4810 4815 9790;9791;9792 9791 -0.050022425476072385 FIDAQFEAY 9 Unmodified _FIDAQFEAY_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS UPN47_class_I_Rep_3 4 552.2557373046875 2 552.25584 1102.49713 0.43349 0.0002394 0.077223 4.2647E-05 0.51071 0.00028205 552.25567565511 66.932 0.96896 70.123 69.788 70.757 3.1914 155 73 3 0 0 0 0.033731 3 16181 16144;16181;16225 55.503 23.197 1 315980 7917 2500 4810 4815 9793;9794;9795 9794 -0.050022425476072385 FIDASRLVY 9 Unmodified _FIDASRLVY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS UPN47_class_I_Rep_1 2 542.2954711914062 2 542.295299 1082.57605 0.4373 0.00023714 -0.078027 -4.2314E-05 0.35927 0.00019483 542.2951652111426 58.982 1.5459 62.399 61.659 63.204 3.4171 323 103 5 0 0 0 0.0094161 3 13724 13650;13688;13724 70.332 34.288 1 1226000 7918 879 4811 4816 9796;9797;9798 9798 0.038060294773458736 FIDASRLVY 9 Unmodified _FIDASRLVY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS UPN47_class_I_Rep_2 3 542.2954711914062 2 542.295299 1082.57605 0.47267 0.00025632 -0.05228 -2.8351E-05 0.42039 0.00022797 542.295214790249 59.229 1.5131 62.51 61.855 63.368 3.2818 327 96 5 0 0 0 0.0094161 2 13804 13765;13804 70.332 34.288 1 1452000 7919 879 4811 4816 9799;9800 9800 0.038060294773458736 FIDASRLVY 9 Unmodified _FIDASRLVY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS UPN47_class_I_Rep_3 4 542.295654296875 2 542.295299 1082.57605 0.33736 0.00018295 0.23392 0.00012686 0.57128 0.0003098 542.2953164512725 59.328 1.9152 62.493 61.574 63.49 3.1651 338 124 5 0 0 0 0.0094161 2 13864 13826;13864 70.332 34.288 1 1274500 7920 879 4811 4816 9801;9802 9802 0.038060294773458736 FIDCRPHY 8 Unmodified _FIDCRPHY_ 0 0 0 REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2 REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2 MSMS UPN46_class_I_Rep_3 1 525.6682739257812 2 525.744919 1049.47529 NaN NaN NaN NaN NaN NaN NaN 56.611 1 56.611 56.111 57.111 0 0 0 0 0.40581 1 12357 12357 2.8892 0 1 + 7921 20337 4812 4817 9803 9803 -0.0474732577715713 FIDEEVLM 8 Oxidation (M) _FIDEEVLM(Oxidation (M))_ FIDEEVLM(1) FIDEEVLM(40) 0 0 1 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-MSMS UPN47_class_I_Rep_2 3 506.2386169433594 2 506.238801 1010.46305 0.22139 0.00011207 -0.17241 -8.7279E-05 0.048981 2.4796E-05 506.23862561270323 59.927 0.61413 63.2 62.965 63.579 3.2731 59 35 2 0 0 0 0.82752 1 14010 14010 40.449 14.107 1 157810 7922 4112 4813 4818 9804 9804 134 -0.04176407030865903 FIDEEVLM 8 Oxidation (M) _FIDEEVLM(Oxidation (M))_ FIDEEVLM(1) FIDEEVLM(47) 0 0 1 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-MSMS UPN47_class_I_Rep_3 4 506.2386474609375 2 506.238801 1010.46305 0.17102 8.6577E-05 0.025758 1.3039E-05 0.19678 9.9617E-05 506.238744113729 59.974 0.78629 63.139 62.804 63.59 3.1651 80 49 2 0 0 0 0.82752 1 14020 14020 46.921 14.804 1 126150 7923 4112 4813 4818 9805 9805 134 -0.04176407030865903 FIDFLLFKKV 10 Unmodified _FIDFLLFKKV_ 0 0 0 L1M4b_dup2290|chr9:113436341-113436859:-|1.3299864262487022|0.003965259199293|8.39|147.0|36|3|anti-sense L1M4b_dup2290|chr9:113436341-113436859:-|1.3299864262487022|0.003965259199293|8.39|147.0|36|3|anti-sense L1M4b_dup2290|chr9:113436341-113436859:-|1.3299864262487022|0.003965259199293|8.39|147.0|36|3|anti-sense MSMS UPN48_class_I_Rep_2 6 635.3848266601562 2 635.383917 1268.75328 NaN NaN NaN NaN NaN NaN NaN 84.048 1 87.73 87.23 88.23 3.6814 0 0 0 0.53105 1 19997 19997 0.40072 0 1 7924 8996 4814 4819 9806 9806 0.12965485027439172 FIDFPHIEEQ 10 Unmodified _FIDFPHIEEQ_ 0 0 0 ENSG00000174016|ENST00000308293|TENT5D ENSG00000174016|ENST00000308293|TENT5D ENSG00000174016|ENST00000308293|TENT5D MSMS UPN47_class_I_Rep_3 4 637.8035888671875 2 637.806228 1273.5979 NaN NaN NaN NaN NaN NaN NaN 65.871 1 69.056 68.556 69.556 3.1853 0 0 0 0.53105 1 15849 15849 1.4819 0.15237 1 7925 4661 4815 4820 9807 9807 -0.027952105647727876 FIDKQTNL 8 Unmodified _FIDKQTNL_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_1 2 489.765625 2 489.766374 977.518196 -0.28377 -0.00013898 -1.1366 -0.00055666 -1.4204 -0.00069565 489.7658413783169 34.424 0.54499 38.11 37.841 38.386 3.6859 55 42 2 0 0 0 0.82752 1 6188 6188 19.257 3.4098 1 141690 7926 898;3531 4816 4821 9808 9808 0.028537675519032746 FIDKQTNL 8 Unmodified _FIDKQTNL_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_2 3 489.76556396484375 2 489.766374 977.518196 -0.11643 -5.7025E-05 -1.4878 -0.00072865 -1.6042 -0.00078568 489.76553306313764 34.588 0.56686 38.013 37.787 38.354 3.4253 63 38 2 0 0 0 0.82752 1 6262 6262 21.747 0.87544 1 138650 7927 898;3531 4816 4821 9809 9809 0.028537675519032746 FIDKQTNL 8 Unmodified _FIDKQTNL_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_3 4 489.7664794921875 2 489.766374 977.518196 -0.36817 -0.00018032 -1.168 -0.00057205 -1.5362 -0.00075237 489.7657528212215 34.788 0.56996 38.052 37.821 38.391 3.2639 79 46 2 0 0 0 0.82752 1 6382 6382 20.454 3.5113 1 136190 7928 898;3531 4816 4821 9810 9810 0.028537675519032746 FIDLNYMVY 9 Oxidation (M) _FIDLNYM(Oxidation (M))VY_ FIDLNYM(1)VY FIDLNYM(50)VY 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000513846.1_1_4:88128285-88128381:+|nuORF;ENST00000509325.1_1_12:7719006-7719195:+|nuORF;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS UPN47_class_I_Rep_1 2 597.2811889648438 2 597.281 1192.54745 0.40919 0.0002444 -0.17031 -0.00010173 0.23888 0.00014268 597.2808152440859 76.314 0.58229 79.729 79.481 80.063 3.4149 123 54 3 0 0 0 0.047711 1 18851 18851 49.933 23.049 1 207880 7929 1977 4817 4822 9811 9811 62 -0.04112456214102167 FIDLNYMVY 9 Oxidation (M) _FIDLNYM(Oxidation (M))VY_ FIDLNYM(1)VY FIDLNYM(73)VY 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000513846.1_1_4:88128285-88128381:+|nuORF;ENST00000509325.1_1_12:7719006-7719195:+|nuORF;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS UPN47_class_I_Rep_2 3 597.2813720703125 2 597.281 1192.54745 0.46835 0.00027974 -0.13246 -7.9117E-05 0.33589 0.00020062 597.2808226749062 76.466 0.8434 79.787 79.49 80.334 3.3216 176 85 3 0 0 0 0.006828 3 18933 18899;18933;18967 72.968 36.841 1 295900 7930 1977 4817 4822 9812;9813;9814 9813 62 -0.04112456214102167 FIDLNYMVY 9 Oxidation (M) _FIDLNYM(Oxidation (M))VY_ FIDLNYM(1)VY FIDLNYM(60)VY 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000513846.1_1_4:88128285-88128381:+|nuORF;ENST00000509325.1_1_12:7719006-7719195:+|nuORF;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS UPN47_class_I_Rep_3 4 597.2811279296875 2 597.281 1192.54745 0.46519 0.00027785 -0.14212 -8.4885E-05 0.32307 0.00019296 597.2808363044988 76.543 0.64979 79.8 79.463 80.113 3.2573 142 65 3 0 0 0 0.025281 2 19040 19006;19040 60.074 34.675 1 274210 7931 1977 4817 4822 9815;9816 9816 62 -0.04112456214102167 FIDQKTYY 8 Unmodified _FIDQKTYY_ 0 0 0 L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 538.7902221679688 2 539.266207 1076.51786 0.34573 0.00018644 -0.083757 -4.5167E-05 0.26197 0.00014127 539.2660348516321 54.557 0.47168 58.058 57.769 58.24 3.5014 40 23 2 0 0 0 0.72333 1 12288 12288 21.747 3.6117 1 74256 7932 11034 4818 4823 9817 9817 -0.017336521679453654 FIDQKTYY 8 Unmodified _FIDQKTYY_ 0 0 0 L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.2662353515625 2 539.266207 1076.51786 0.4691 0.00025297 -0.25775 -0.000139 0.21135 0.00011397 539.2660599872696 54.839 0.51471 58.158 57.899 58.414 3.3187 41 27 2 0 0 0 0.82752 1 12440 12440 20.454 1.1966 1 78040 7933 11034 4818 4823 9818 9818 -0.017336521679453654 FIDQKTYY 8 Unmodified _FIDQKTYY_ 0 0 0 L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense L1MB8_dup8195|chr9:92627075-92628593:+|1.799178121940062|0.2073345832361885|3.12|151.0|31|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 538.790283203125 2 539.266207 1076.51786 0.41847 0.00022566 -0.26601 -0.00014345 0.15246 8.2214E-05 539.2660448874972 54.89 0.50006 58.075 57.909 58.409 3.1856 39 29 2 0 0 0 0.72333 1 12485 12485 30.637 3.7529 1 68172 7934 11034 4818 4823 9819 9819 -0.017336521679453654 FIDTTSKF 8 Unmodified _FIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS UPN47_class_I_Rep_1 2 479.7472229003906 2 479.74765 957.480748 -0.24001 -0.00011514 0.29771 0.00014282 0.057697 2.768E-05 479.74766173851975 42.124 0.72499 45.804 45.491 46.216 3.6792 108 47 3 0 0 0 0.82752 3 8493 8493;8530;8570 47.749 17.524 1 182450 7935 1491 4819 4824 9820;9821;9822 9820 0.0003067628629196406 FIDTTSKF 8 Unmodified _FIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS UPN47_class_I_Rep_2 3 479.74725341796875 2 479.74765 957.480748 -0.18086 -8.6767E-05 0.2891 0.00013869 0.10824 5.1926E-05 479.7476881677632 42.469 1.0274 45.83 45.503 46.53 3.3611 119 72 2 0 0 0 0.82752 3 8623 8623;8666;8702 34.402 7.4447 1 170250 7936 1491 4819 4824 9823;9824;9825 9823 0.0003067628629196406 FIDTTSKF 8 Unmodified _FIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS UPN47_class_I_Rep_3 4 479.7474365234375 2 479.74765 957.480748 -0.26497 -0.00012712 0.36485 0.00017504 0.099882 4.7918E-05 479.74767861261085 42.641 0.82769 45.881 45.558 46.385 3.2394 113 54 3 0 0 0 0.82752 4 8701 8701;8741;8785;8823 62.573 28.47 1 179990 7937 1491 4819 4824 9826;9827;9828;9829 9826 0.0003067628629196406 FIEHFTQY 8 Unmodified _FIEHFTQY_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|163|3|sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|163|3|sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|163|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 542.75830078125 2 542.758549 1083.50255 0.48328 0.0002623 -0.86182 -0.00046776 -0.37854 -0.00020545 542.7579838104967 31.91 0.3468 35.551 35.325 35.671 3.641 41 33 2 0 0 0 0.82752 1 4878 4878 4.3292 0.38484 1 47129 7938 9957 4820 4825 9830 9830 -0.03586518965130381 FIEKCQVFW 9 Unmodified _FIEKCQVFW_ 0 0 0 L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|38|1|sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|38|1|sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|38|1|sense MSMS UPN47_class_I_Rep_3 4 600.3008422851562 2 600.299527 1198.5845 NaN NaN NaN NaN NaN NaN NaN 55.474 1 58.652 58.152 59.152 3.1779 0 0 0 0.38639 1 12680 12680 3.9444 1.6417 1 7939 12464 4821 4826 9831 9831 -0.006847398777154012 FIENQNNYK 9 Unmodified _FIENQNNYK_ 0 0 0 REV__L1MB8_dup8791|chrX:41157349-41158647:+|1.0675509711449596|0.0253298847501564|5.4|151.0|11|1|sense REV__L1MB8_dup8791|chrX:41157349-41158647:+|1.0675509711449596|0.0253298847501564|5.4|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 585.294189453125 2 585.28292 1168.55129 0.059146 3.4617E-05 0.0067952 3.9771E-06 0.065941 3.8594E-05 585.2827611980672 43.705 0.88016 47.4 47.07 47.95 3.6951 112 51 3 0 0 0 0.30034 1 9095 9095 13.906 0 1 289210 + 7940 26443 4822 4827 9832 9832 -0.026246503960464906 FIENQNNYK 9 Unmodified _FIENQNNYK_ 0 0 0 REV__L1MB8_dup8791|chrX:41157349-41158647:+|1.0675509711449596|0.0253298847501564|5.4|151.0|11|1|sense REV__L1MB8_dup8791|chrX:41157349-41158647:+|1.0675509711449596|0.0253298847501564|5.4|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 585.2957153320312 2 585.28292 1168.55129 0.16295 9.5373E-05 -0.0013348 -7.8122E-07 0.16162 9.4592E-05 585.2827732215254 44.016 0.88158 47.374 47.001 47.882 3.358 116 49 3 0 0 0 0.36392 1 9229 9229 10.074 0 1 262490 + 7941 26443 4822 4827 9833 9833 -0.026246503960464906 FIENQNNYK 9 Unmodified _FIENQNNYK_ 0 0 0 REV__L1MB8_dup8791|chrX:41157349-41158647:+|1.0675509711449596|0.0253298847501564|5.4|151.0|11|1|sense REV__L1MB8_dup8791|chrX:41157349-41158647:+|1.0675509711449596|0.0253298847501564|5.4|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 585.295654296875 2 585.28292 1168.55129 0.17781 0.00010407 -0.1198 -7.0114E-05 0.058011 3.3953E-05 585.2827645744386 44.154 0.76712 47.399 47.047 47.814 3.2441 104 43 3 0 0 0 0.30034 1 9312 9312 13.906 3.0821 1 273250 + 7942 26443 4822 4827 9834 9834 -0.026246503960464906 FIERFYYYYYY 11 Unmodified _FIERFYYYYYY_ 0 0 0 L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|171|1|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|171|1|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|171|1|anti-sense MSMS UPN48_class_I_Rep_2 6 563.9259033203125 3 563.925654 1688.75513 NaN NaN NaN NaN NaN NaN NaN 47.722 1 51.458 50.958 51.958 3.7361 0 0 0 0.38417 1 9457 9457 0 0 1 7943 9324 4823 4828 9835 9835 -0.06169550745221386 FIFAYIYL 8 Unmodified _FIFAYIYL_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|32|3|anti-sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_1 2 525.320556640625 2 525.288954 1048.56336 NaN NaN NaN NaN NaN NaN NaN 75.723 1 79.127 78.627 79.627 3.4034 0 0 0 0.4032 1 18707 18707 6.3541 0 1 + 7944 27764 4824 4829 9836 9836 0.04101618085064729 FIFDLPAHQK 10 Unmodified _FIFDLPAHQK_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS UPN48_class_I_Rep_1 5 405.88873291015625 3 405.888874 1214.64479 -0.11833 -4.8028E-05 0.13767 5.5879E-05 0.019342 7.8506E-06 405.88882314515973 53.22 0.877 56.739 56.28 57.157 3.5192 141 63 3 0 0 0 0.43193 2 11139 11086;11139 17.049 8.893 1 297600 7945 3671 4825 4830 9837;9838 9838 0.046056937770117656 FIFDLPAHQK 10 Unmodified _FIFDLPAHQK_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS UPN48_class_I_Rep_2 6 405.888671875 3 405.888874 1214.64479 0.13899 5.6414E-05 -0.040545 -1.6457E-05 0.098444 3.9957E-05 405.88875233392184 53.076 0.81583 56.686 56.316 57.132 3.6098 106 51 3 0 0 0 0.51384 2 11040 11040;11089 10.315 2.1597 1 323760 7946 3671 4825 4830 9839;9840 9839 0.046056937770117656 FIFDLPAHQK 10 Unmodified _FIFDLPAHQK_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS UPN48_class_I_Rep_3 7 405.8887939453125 3 405.888874 1214.64479 -0.044504 -1.8064E-05 0.17386 7.0566E-05 0.12935 5.2503E-05 405.8888780827209 53.031 0.8056 56.614 56.315 57.121 3.5836 128 52 4 0 0 0 0.51384 1 11002 11002 10.315 0.55098 1 553860 7947 3671 4825 4830 9841 9841 0.046056937770117656 FIFHYMDK 8 Unmodified _FIFHYMDK_ 0 0 0 L1ME4a_dup26819|chr14:45208054-45208330:-|2.40763953826502|0.4766878377420692|2.34|151.0|16|1|anti-sense L1ME4a_dup26819|chr14:45208054-45208330:-|2.40763953826502|0.4766878377420692|2.34|151.0|16|1|anti-sense L1ME4a_dup26819|chr14:45208054-45208330:-|2.40763953826502|0.4766878377420692|2.34|151.0|16|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.7652587890625 2 550.76532 1099.51609 0.53215 0.00029309 1.7604 0.00096959 2.2926 0.0012627 551.2680352030715 51.083 0.49608 54.3 53.994 54.49 3.2163 39 22 2 0 0 0 0.82752 1 11285 11285 2.8892 0.15402 1 70951 7948 12866 4826 4831 9842 9842 -0.029689844575841562 FIFIHKKKGT 10 Unmodified _FIFIHKKKGT_ 0 0 0 REV__ENST00000592022.1_1_19:20328009-20328081:-|nuORF REV__ENST00000592022.1_1_19:20328009-20328081:-|nuORF MSMS UPN47_class_I_Rep_1 2 406.5833435058594 3 406.916764 1217.72846 NaN NaN NaN NaN NaN NaN NaN 104.74 1 108.48 107.98 108.98 3.7395 0 0 0 0.53105 1 25722 25722 0.62683 0.39098 1 + 7949 23176 4827 4832 9843 9843 0.12830849944725742 FIFISASSQL 10 Unmodified _FIFISASSQL_ 0 0 0 REV__L1MB7_dup11313|chr9:124706816-124708427:-|2.153266797665345|0.0254321719954884|6.4|151.0|70|1|anti-sense REV__L1MB7_dup11313|chr9:124706816-124708427:-|2.153266797665345|0.0254321719954884|6.4|151.0|70|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 556.298583984375 2 556.802957 1111.59136 0.40197 0.00022382 -3.3745 -0.0018789 -2.9725 -0.0016551 556.8008554592986 60.936 0.16013 64.449 64.315 64.475 3.5128 17 13 2 0 0 0 0.84575 1 13389 13389 12.241 2.1667 1 88082 + 7950 26124 4828 4833 9844 9844 0.040028962745282115 FIFKMFIY 8 Unmodified _FIFKMFIY_ 0 0 0 L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|93|3|anti-sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|93|3|anti-sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|93|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.79833984375 2 554.798632 1107.58271 NaN NaN NaN NaN NaN NaN NaN 45.851 1 49.095 48.595 49.595 3.2441 0 0 0 0.39819 1 9754 9754 8.5933 1.304 1 7951 12304 4829 4834 9845 9845 0.03322251104350471 FIFNLAETA 9 Unmodified _FIFNLAETA_ 0 0 0 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron;ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|3|intron;ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 513.2686157226562 2 513.26875 1024.52295 0.3153 0.00016183 -0.050225 -2.5779E-05 0.26507 0.00013605 513.2686155646461 83.786 0.28544 83.786 83.558 83.843 0 53 28 2 0 0 0 0.18929 1 19888 19888 21.747 3.6117 1 344870 7952 1070 4830 4835 9846 9846 0.011666516946434058 FIFNLAETA 9 Unmodified _FIFNLAETA_ 0 0 0 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron;ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|3|intron;ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron MSMS UPN47_class_I_Rep_2 3 513.2687377929688 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 79.625 1 82.98 82.48 83.48 3.3554 0 0 0 0.15455 1 19828 19828 19.257 0 1 7953 1070 4830 4835 9847 9847 0.011666516946434058 FIFNLAETA 9 Unmodified _FIFNLAETA_ 0 0 0 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron;ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|3|intron;ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 513.26806640625 2 513.26875 1024.52295 0.29986 0.00015391 -0.48815 -0.00025055 -0.1883 -9.6646E-05 513.2683538072187 79.905 0.2925 83.214 82.992 83.285 3.309 51 32 2 0 0 0 0.42249 1 19985 19985 6.7232 1.9672 1 96291 7954 1070 4830 4835 9848 9848 0.011666516946434058 FIFNLAETA 9 Unmodified _FIFNLAETA_ 0 0 0 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron;ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|3|intron;ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 513.2687377929688 2 513.26875 1024.52295 0.3005 0.00015424 -0.074452 -3.8214E-05 0.22605 0.00011602 513.2684456596686 80.028 0.17375 83.337 83.274 83.447 3.309 26 19 2 0 0 0 0.42249 1 20030 20030 6.7232 1.4925 1 55144 7955 1070 4830 4835 9849 9849 0.011666516946434058 FIFPWRYIR 9 Unmodified _FIFPWRYIR_ 0 0 0 L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|18|1|anti-sense L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|18|1|anti-sense L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 649.3614501953125 2 649.36385 1296.71315 NaN NaN NaN NaN NaN NaN NaN 58.266 1 58.266 57.766 58.766 0 0 0 0 0.40038 1 12815 12815 0.6015 0.20078 1 7956 12747 4831 4836 9850 9850 0.07665983147535371 FIFQWHWP 8 Unmodified _FIFQWHWP_ 0 0 0 MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|12|2|sense MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|12|2|sense MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 580.7696533203125 2 580.787444 1159.56034 NaN NaN NaN NaN NaN NaN NaN 31.168 1 34.467 33.967 34.967 3.2991 0 0 0 0.40604 1 5275 5275 2.5775 0.73324 1 7957 16206 4832 4837 9851 9851 -0.013062122490737238 FIFSDTHEL 9 Unmodified _FIFSDTHEL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_1 2 554.76904296875 2 554.769114 1107.52368 0.4318 0.00023955 -0.17295 -9.5946E-05 0.25885 0.0001436 554.7687874405464 59.323 1.0988 62.74 62.394 63.492 3.4171 147 73 3 0 0 0 0.0059033 6 13733 13733;13774;13813;13854;13892;13933 81.89 39.796 1 786540 7958 1621 4833 4838 9852;9853;9854;9855;9856;9857 9852 -0.02578553656303484 FIFSDTHEL 9 Unmodified _FIFSDTHEL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_2 3 554.7689819335938 2 554.769114 1107.52368 0.50144 0.00027818 0.048996 2.7182E-05 0.55044 0.00030536 554.7687971594643 59.606 1.0329 62.879 62.558 63.591 3.2731 135 64 3 0 0 0 0.006343 5 13906 13866;13906;13950;13996;14090 74.929 30.522 1 962090 7959 1621 4833 4838 9858;9859;9860;9861;9862 9859 -0.02578553656303484 FIFSDTHEL 9 Unmodified _FIFSDTHEL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 554.769114 1107.52368 0.35777 0.00019848 -0.52135 -0.00028923 -0.16359 -9.0753E-05 554.7688910057096 59.818 1.0744 62.983 62.516 63.59 3.1651 0.11572 -0.00010375 NaN 81.89 137 70 2 NaN NaN NaN NaN 0 NaN NaN 0 569000 7960 1621 4833 4838 -0.02578553656303484 FIFSNFYY 8 Unmodified _FIFSNFYY_ 0 0 0 L1PA15_dup1514|chr3:125467713-125468404:+|1.3338306690981092|0.1172268794608493|3.51|151.0|32|2|anti-sense L1PA15_dup1514|chr3:125467713-125468404:+|1.3338306690981092|0.1172268794608493|3.51|151.0|32|2|anti-sense L1PA15_dup1514|chr3:125467713-125468404:+|1.3338306690981092|0.1172268794608493|3.51|151.0|32|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.7409057617188 2 550.758018 1099.50148 NaN NaN NaN NaN NaN NaN NaN 60.133 1 63.531 63.031 64.031 3.3982 0 0 0 0.36705 1 14015 14015 18.135 6.4947 1 7961 13874 4834 4839 9863 9863 -0.04428733334066237 FIFVYNVR 8 Unmodified _FIFVYNVR_ 0 0 0 L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|121|2|anti-sense L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|121|2|anti-sense L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|121|2|anti-sense MSMS UPN46_class_I_Rep_3 1 529.652099609375 2 529.295102 1056.57565 NaN NaN NaN NaN NaN NaN NaN 65.938 1 65.938 65.438 66.438 0 0 0 0 0.40604 1 14932 14932 2.5775 0 1 7962 12716 4835 4840 9864 9864 0.04962654548126011 FIFYFAYFL 9 Unmodified _FIFYFAYFL_ 0 0 0 L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|126|3|anti-sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|126|3|anti-sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|126|3|anti-sense MSMS UPN48_class_I_Rep_1 5 615.8150634765625 2 615.815336 1229.61612 NaN NaN NaN NaN NaN NaN NaN 72.505 1 75.978 75.478 76.478 3.4732 0 0 0 0.381 1 17020 17020 5.2307 0.90143 1 7963 11324 4836 4841 9865 9865 0.010495761478750865 FIFYHRKW 8 Unmodified _FIFYHRKW_ 0 0 0 REV__L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|74|2|anti-sense REV__L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.8194580078125 2 598.821818 1195.62908 NaN NaN NaN NaN NaN NaN NaN 65.311 1 68.667 68.167 69.167 3.3557 0 0 0 0.40738 1 15570 15570 0.79363 0 1 + 7964 30562 4837 4842 9866 9866 0.03909452050629625 FIGWFTSS 8 Unmodified _FIGWFTSS_ 0 0 0 REV__THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|78|2|anti-sense REV__THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_2 3 472.7294006347656 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 98.73 1 102.22 101.72 102.72 3.4897 0 0 0 0.39408 1 24202 24202 10.183 0.83596 1 + 7965 32249 4838 4843 9867 9867 -0.030015755396107124 FIGWFTSS 8 Unmodified _FIGWFTSS_ 0 0 0 REV__THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|78|2|anti-sense REV__THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|78|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.72930908203125 2 472.729261 943.443968 0.2176 0.00010287 0.64215 0.00030356 0.85976 0.00040643 472.72940518749493 91.453 0.075775 95.317 95.276 95.351 3.8634 14 10 2 0 0 0 0.82752 1 21683 21683 5.7604 0.52976 1 1045100 + 7966 32249 4838 4843 9868 9868 -0.030015755396107124 FIGWFTSS 8 Unmodified _FIGWFTSS_ 0 0 0 REV__THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|78|2|anti-sense REV__THE1B-int_dup214|chr1:175983555-175985118:+|3.04877164461138|0.1090783297017454|4.8|151.0|78|2|anti-sense MSMS UPN48_class_I_Rep_3 7 472.7294006347656 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 90.922 1 94.769 94.269 95.269 3.847 0 0 0 0.40364 1 21563 21563 5.7604 0 1 + 7967 32249 4838 4843 9869 9869 -0.030015755396107124 FIHCMCVVSY 10 Unmodified _FIHCMCVVSY_ 0 0 0 REV__L1PA3_dup971|chr2:62005460-62006359:+|1.0872679767419462|0.0337499352813682|5.01|151.0|40|2|anti-sense REV__L1PA3_dup971|chr2:62005460-62006359:+|1.0872679767419462|0.0337499352813682|5.01|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 601.7399291992188 2 601.263773 1200.51299 NaN NaN NaN NaN NaN NaN NaN 68.827 1 72.097 71.597 72.597 3.2696 0 0 0 0.53105 1 16679 16679 3.2813 0 1 + 7968 29580 4839 4844 9870 9870 -0.07924318898221827 FIHDKPPF 8 Unmodified _FIHDKPPF_ 0 0 0 REV__L1MB3_dup6794|chr7:75675918-75676494:-|1.210086171965|0.0171851958279911|6.14|151.0|33|3|anti-sense REV__L1MB3_dup6794|chr7:75675918-75676494:-|1.210086171965|0.0171851958279911|6.14|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.780517578125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 31.447 1 35.088 34.588 35.588 3.641 0 0 0 0.40625 1 4732 4732 2.3027 0 1 + 7969 25907 4840 4845 9871 9871 0.018023926227101583 FIHFSSYRS 9 Unmodified _FIHFSSYRS_ 0 0 0 REV__L1MEf_dup2310|chr3:136634498-136635961:+|1.119482072862859|0.014246605747842|6.3|151.0|100|3|anti-sense REV__L1MEf_dup2310|chr3:136634498-136635961:+|1.119482072862859|0.014246605747842|6.3|151.0|100|3|anti-sense MSMS UPN47_class_I_Rep_3 4 572.2657470703125 2 572.282723 1142.55089 NaN NaN NaN NaN NaN NaN NaN 46.665 1 49.909 49.409 50.409 3.2439 0 0 0 0.38299 1 10004 10004 4.756 1.1595 1 + 7970 28621 4841 4846 9872 9872 -0.01468025325243616 FIHIITDRRI 10 Unmodified _FIHIITDRRI_ 0 0 0 L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|87|1|anti-sense L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|87|1|anti-sense L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|87|1|anti-sense MSMS UPN47_class_I_Rep_3 4 642.3834838867188 2 642.382771 1282.75099 NaN NaN NaN NaN NaN NaN NaN 88.413 1 91.8 91.3 92.3 3.3873 0 0 0 0.53105 1 22173 22173 0.45834 0 1 7971 10147 4842 4847 9873 9873 0.12092449342367217 FIHMEWLTY 9 Unmodified _FIHMEWLTY_ 0 0 0 REV__ENST00000323224.7_1_18:671383-671425:+|nuORF REV__ENST00000323224.7_1_18:671383-671425:+|nuORF MSMS UPN48_class_I_Rep_2 6 620.298583984375 2 620.296985 1238.57942 NaN NaN NaN NaN NaN NaN NaN 58.131 1 61.63 61.13 62.13 3.4987 0 0 0 0.36505 1 12635 12635 7.2892 0.56607 1 + 7972 21748 4843 4848 9874 9874 -0.030330437403335964 FIIPCPLFVG 10 Unmodified _FIIPCPLFVG_ 0 0 0 REV__ENST00000521913.6_3_8:26514019-26514187:+|nuORF REV__ENST00000521913.6_3_8:26514019-26514187:+|nuORF MSMS UPN48_class_I_Rep_1 5 553.3087768554688 2 553.309364 1104.60417 NaN NaN NaN NaN NaN NaN NaN 40.05 1 43.555 43.055 44.055 3.5048 0 0 0 0.53105 1 7142 7142 1.8442 0 1 + 7973 22789 4844 4849 9875 9875 0.05605636133054759 FIIQGLRSV 9 Unmodified _FIIQGLRSV_ 0 0 0 ENSG00000237541|ENST00000374940|HLA-DQA2;ENST00000460633.1_1_6:32610352-32610538:+|nuORF;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENSG00000196735|ENST00000343139|HLA-DQA1 ENSG00000237541|ENST00000374940|HLA-DQA2 ENSG00000237541|ENST00000374940|HLA-DQA2 MULTI-MSMS UPN47_class_I_Rep_1 2 516.7957153320312 2 516.813659 1031.61277 0.30245 0.00015631 -0.51085 -0.00026401 -0.20841 -0.00010771 516.8133515228745 59.688 0.7166 63.086 62.784 63.501 3.3982 62 44 2 0 0 0 0.095207 3 13908 13817;13908;13950 34.932 16.149 1 147680 7974 5692 4845 4850 9876;9877;9878 9877 0.09822326093922129 FIIQGLRSV 9 Unmodified _FIIQGLRSV_ 0 0 0 ENSG00000237541|ENST00000374940|HLA-DQA2;ENST00000460633.1_1_6:32610352-32610538:+|nuORF;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENSG00000196735|ENST00000343139|HLA-DQA1 ENSG00000237541|ENST00000374940|HLA-DQA2 ENSG00000237541|ENST00000374940|HLA-DQA2 MULTI-MSMS UPN47_class_I_Rep_2 3 516.8134765625 2 516.813659 1031.61277 0.13233 6.8391E-05 0.22007 0.00011373 0.3524 0.00018213 516.8135457859111 59.925 0.6048 63.198 62.974 63.579 3.2731 48 34 2 0 0 0 0.11355 3 13974 13974;14003;14087 31.268 11.829 1 143550 7975 5692 4845 4850 9879;9880;9881 9879 0.09822326093922129 FIIQGLRSV 9 Unmodified _FIIQGLRSV_ 0 0 0 ENSG00000237541|ENST00000374940|HLA-DQA2;ENST00000460633.1_1_6:32610352-32610538:+|nuORF;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENSG00000196735|ENST00000343139|HLA-DQA1 ENSG00000237541|ENST00000374940|HLA-DQA2 ENSG00000237541|ENST00000374940|HLA-DQA2 MULTI-MSMS UPN47_class_I_Rep_3 4 516.8137817382812 2 516.813659 1031.61277 0.20898 0.000108 -0.11808 -6.1026E-05 0.090897 4.6977E-05 516.8135108254723 60.052 0.58991 63.217 62.981 63.571 3.1651 60 35 2 0 0 0 0.19147 1 14026 14026 21.537 2.098 1 151880 7976 5692 4845 4850 9882 9882 0.09822326093922129 FIIQNEEPL 9 Unmodified _FIIQNEEPL_ 0 0 0 REV__L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|35|3|sense REV__L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|35|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 551.7925415039062 2 551.792589 1101.57063 0.46429 0.00025619 -0.16537 -9.1252E-05 0.29892 0.00016494 551.7924458016897 82.846 0.14469 86.384 86.297 86.441 3.5386 29 16 2 0 0 0 0.118 1 20703 20703 10.074 0.6908 1 78510 + 7977 28746 4846 4851 9883 9883 0.02390305894869016 FIIQNEEPL 9 Unmodified _FIIQNEEPL_ 0 0 0 REV__L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|35|3|sense REV__L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|35|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 551.792589 1101.57063 0.51949 0.00028665 -0.45644 -0.00025186 0.063046 3.4788E-05 552.293908129959 82.989 0.042694 86.387 86.367 86.41 3.3984 0.0014261 -0.00029341 NaN 10.074 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48067 + 7978 28746 4846 4851 0.02390305894869016 FIISDFESV 9 Unmodified _FIISDFESV_ 0 0 0 nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1 nc|ENSG00000164307|Q9NZ08-2|ERAP1 nc|ENSG00000164307|Q9NZ08-2|ERAP1 MSMS UPN47_class_I_Rep_3 4 528.74853515625 2 528.76604 1055.51753 NaN NaN NaN NaN NaN NaN NaN 79.339 1 82.634 82.134 83.134 3.295 0 0 0 0.046744 1 19825 19825 37.974 21.032 1 7979 4103 4847 4852 9884 9884 -0.00801071887804028 FIISDFESV 9 Unmodified _FIISDFESV_ 0 0 0 nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1 nc|ENSG00000164307|Q9NZ08-2|ERAP1 nc|ENSG00000164307|Q9NZ08-2|ERAP1 MSMS UPN47_class_I_Rep_3 4 528.7484741210938 2 528.76604 1055.51753 NaN NaN NaN NaN NaN NaN NaN 79.469 1 82.764 82.264 83.264 3.295 0 0 0 0.066339 1 19865 19865 32.305 11.434 1 7980 4103 4847 4852 9885 9885 -0.00801071887804028 FIISRTQAL 9 Unmodified _FIISRTQAL_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS UPN48_class_I_Rep_1 5 524.8124389648438 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 50.557 1 54.082 53.582 54.582 3.5246 0 0 0 0.16861 1 10337 10337 18.373 2.5259 1 7981 1239 4848 4853 9886 9886 0.08578022231267823 FIITGYCPL 9 Unmodified _FIITGYCPL_ 0 0 0 REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|229|3|anti-sense REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|229|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 513.2680053710938 2 513.770071 1025.52559 0.30067 0.00015448 0.60628 0.00031149 0.90695 0.00046597 513.7703835822795 79.545 0.15048 82.84 82.781 82.932 3.295 19 13 2 0 0 0 0.11775 1 19910 19910 9.3474 2.9933 1 64406 + 7982 25966 4849 4854 9887 9887 0.013847838279616553 FIKDGSSTY 9 Unmodified _FIKDGSSTY_ 0 0 0 ENST00000492877.1_1_1:28211787-28212430:+|nuORF;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 ENST00000492877.1_1_1:28211787-28212430:+|nuORF ENST00000492877.1_1_1:28211787-28212430:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 509.2480163574219 2 509.248015 1016.48148 0.14234 7.2488E-05 0.041552 2.116E-05 0.1839 9.3649E-05 509.2479257839884 33.806 0.87643 33.806 33.513 34.39 0 142 65 3 0 0 0 0.062142 4 5988 5909;5946;5988;6030 43.772 9.3707 1 281590 7983 2680 4850 4855 9888;9889;9890;9891 9890 -0.0261052906465693 FIKEGHIQF 9 Unmodified _FIKEGHIQF_ 0 0 0 REV__L1ME4b_dup20298|chr19:48246608-48247041:+|1.1079403184936376|0.0913393992552089|3.6|151.0|22|1|anti-sense REV__L1ME4b_dup20298|chr19:48246608-48247041:+|1.1079403184936376|0.0913393992552089|3.6|151.0|22|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.802734375 2 559.803291 1117.59203 0.49889 0.00027928 -1.0052 -0.0005627 -0.50627 -0.00028341 559.8025804162951 68.908 0.76141 72.416 71.909 72.671 3.5083 96 57 2 0 0 0 0.25207 1 15945 15945 16.942 16.942 1 146530 + 7984 28277 4851 4856 9892 9892 0.03793735714225477 FIKFCVHFY 9 Unmodified _FIKFCVHFY_ 0 0 0 REV__L1MA4A_dup1556|chr4:87153642-87155618:+|1.8773451439489997|0.2677219355414964|2.81|151.0|130|3|anti-sense REV__L1MA4A_dup1556|chr4:87153642-87155618:+|1.8773451439489997|0.2677219355414964|2.81|151.0|130|3|anti-sense MSMS UPN48_class_I_Rep_3 7 602.3051147460938 2 602.304613 1202.59467 NaN NaN NaN NaN NaN NaN NaN 42.679 1 46.321 45.821 46.821 3.6415 0 0 0 0.39326 1 7849 7849 2.3027 0 1 + 7985 25238 4852 4857 9893 9893 0.0014786784754505788 FIKKYYDGWLI 11 Unmodified _FIKKYYDGWLI_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-SECPEP UPN47_class_I_Rep_3 4 483.2366638183594 3 482.599101 1444.77547 -0.44629 -0.00021538 0.46864 0.00022617 0.02235 1.0786E-05 482.5994229291979 34.808 0.41643 38.072 37.859 38.276 3.2639 47 34 2 0 0 0 22.551 1 6327 6327 0.50596 0 1 65705 7986 1589 4853 4858 9894 9894 0.07087664705227326 FIKLKKNTYR 10 Unmodified _FIKLKKNTYR_ 0 0 0 REV__Tigger1_dup8444|chr11:14692414-14694763:+|1.5435260405628968|0.0244454086420363|5.98|149.0|162|3|anti-sense REV__Tigger1_dup8444|chr11:14692414-14694763:+|1.5435260405628968|0.0244454086420363|5.98|149.0|162|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 437.26751708984375 3 437.602957 1309.78704 -0.27686 -0.00012115 -1.4677 -0.00064226 -1.7445 -0.00076342 437.602321603595 51.217 0.52096 54.434 54.112 54.633 3.2163 30 24 2 0 0 0 0.84575 1 11328 11328 0.77653 0.27058 1 71983 + 7987 32548 4854 4859 9895 9895 0.14453906519224802 FIKNKTHY 8 Unmodified _FIKNKTHY_ 0 0 0 REV__L1MD2_dup5894|chrX:19816799-19817515:-|1.334828424595657|0.0029749406148791|8.81|150.0|21|2|sense REV__L1MD2_dup5894|chrX:19816799-19817515:-|1.334828424595657|0.0029749406148791|8.81|150.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 525.79052734375 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 31.348 1 34.989 34.489 35.489 3.641 0 0 0 0.40625 1 4705 4705 2.3027 0 1 + 7988 27416 4855 4860 9896 9896 0.04301466542756316 FIKVIELN 8 Unmodified _FIKVIELN_ 0 0 0 REV__HAL1ME_dup5585|chr10:43169284-43170065:+|1.4325488124362025|0.1533479677686342|3.22|151.0|22|3|sense REV__HAL1ME_dup5585|chr10:43169284-43170065:+|1.4325488124362025|0.1533479677686342|3.22|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 488.2975158691406 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 58.855 1 62.137 61.637 62.637 3.2818 0 0 0 0.4044 1 13656 13656 4.756 0 1 + 7989 23497 4856 4861 9897 9897 0.09176118971026881 FILDSWGTYV 10 Unmodified _FILDSWGTYV_ 0 0 0 L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|108|3|anti-sense L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|108|3|anti-sense L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|108|3|anti-sense MSMS UPN48_class_I_Rep_3 7 600.80078125 2 600.800414 1199.58628 NaN NaN NaN NaN NaN NaN NaN 77.696 1 81.297 80.797 81.797 3.6016 0 0 0 0.53105 1 18367 18367 3.2813 0 1 7990 14058 4857 4862 9898 9898 -0.005534075881087119 FILFFFFFKIY 11 Unmodified _FILFFFFFKIY_ 0 0 0 REV__HAL1_dup2652|chr2:73749243-73749763:+|1.5513473277014511|0.1809687479099821|3.1|151.0|34|2|anti-sense REV__HAL1_dup2652|chr2:73749243-73749763:+|1.5513473277014511|0.1809687479099821|3.1|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2838439941406 3 511.284454 1530.83153 0.29828 0.0001525 -1.125 -0.00057521 -0.82674 -0.0004227 511.2837132972635 35.601 0.45032 39.288 39.122 39.572 3.6877 92 42 3 0 0 0 0.62008 1 5935 5935 4.7159 1.8726 1 147190 + 7991 23415 4858 4863 9899 9899 0.08734917612719073 FILFFFFFKIY 11 Unmodified _FILFFFFFKIY_ 0 0 0 REV__HAL1_dup2652|chr2:73749243-73749763:+|1.5513473277014511|0.1809687479099821|3.1|151.0|34|2|anti-sense REV__HAL1_dup2652|chr2:73749243-73749763:+|1.5513473277014511|0.1809687479099821|3.1|151.0|34|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 511.23492431640625 3 511.284454 1530.83153 0.20081 0.00010267 -0.97307 -0.00049752 -0.77226 -0.00039485 511.28387705273406 36.218 0.50433 39.885 39.674 40.178 3.6667 68 50 2 0 0 0 22.551 1 6044 6044 2.6312 1.4164 1 142200 + 7992 23415 4858 4863 9900 9900 0.08734917612719073 FILKFHILSK 10 Unmodified _FILKFHILSK_ 0 0 0 REV__L1MB4_dup7969|chr18:13467020-13468270:+|4.037314283542957|0.0360938893192143|6.81|151.0|61|2|anti-sense REV__L1MB4_dup7969|chr18:13467020-13468270:+|4.037314283542957|0.0360938893192143|6.81|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_3 7 623.388671875 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 109.04 1 112.71 112.21 113.21 3.6751 0 0 0 0.53105 1 25873 25873 8.7454 0 1 + 7993 25443 4859 4864 9901 9901 0.15192307121606063 FILLPFEIL 9 Unmodified _FILLPFEIL_ 0 0 0 REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|193|2|anti-sense REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|193|2|anti-sense MSMS UPN46_class_I_Rep_3 1 552.8394775390625 2 552.838811 1103.66307 NaN NaN NaN NaN NaN NaN NaN 67.862 1 67.862 67.362 68.362 0 0 0 0 0.052575 1 15466 15466 36.044 5.8194 1 + 7994 25489 4860 4865 9902 9902 0.11538435699048932 FILMMPVKKE 10 Unmodified _FILMMPVKKE_ 0 0 0 REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF MSMS UPN48_class_I_Rep_2 6 618.3465576171875 2 618.348163 1234.68177 NaN NaN NaN NaN NaN NaN NaN 88.218 1 91.946 91.446 92.446 3.7279 0 0 0 0.53105 1 21002 21002 1.4819 0.95714 1 + 7995 23051 4861 4866 9903 9903 0.07381906006958161 FILPSGDHF 9 Unmodified _FILPSGDHF_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|233|1|anti-sense;HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|99|2|anti-sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|233|1|anti-sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|233|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 516.7615966796875 2 516.761092 1031.50763 0.39365 0.00020342 -0.04659 -2.4076E-05 0.34706 0.00017935 516.7609930822789 62.889 0.90134 66.352 65.893 66.794 3.4625 134 61 3 0 0 0 0.3898 1 14006 14006 8.5933 0.68312 1 653010 7996 8083 4862 4867 9904 9904 -0.006862151025416097 FILPSGDHF 9 Unmodified _FILPSGDHF_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|233|1|anti-sense;HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|99|2|anti-sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|233|1|anti-sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|233|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.7608032226562 2 516.761092 1031.50763 0.39733 0.00020533 -0.0090543 -4.6789E-06 0.38828 0.00020065 516.7610256970828 62.761 0.87865 66.235 65.829 66.708 3.4738 142 61 3 0 0 0 0.46434 1 13954 13954 4.3292 0.38484 1 846480 7997 8083 4862 4867 9905 9905 -0.006862151025416097 FILRHPPMRRY 11 Unmodified _FILRHPPMRRY_ 0 0 0 REV__ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron REV__ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron MSMS UPN46_class_I_Rep_3 1 496.29534912109375 3 495.946841 1484.81869 NaN NaN NaN NaN NaN NaN NaN 36.533 1 36.533 36.033 37.033 0 0 0 0 0.38417 1 6781 6781 1.4551 0.67859 1 + 7998 19010 4863 4868 9906 9906 0.09567576001518319 FILWAHYPAG 10 Unmodified _FILWAHYPAG_ 0 0 0 REV__AluJb_dup40246|chr6:2299253-2299612:+|1.1136530093741477|0.0191192647946631|5.86|151.0|22|3|anti-sense REV__AluJb_dup40246|chr6:2299253-2299612:+|1.1136530093741477|0.0191192647946631|5.86|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_3 7 587.8048706054688 2 587.805834 1173.59712 NaN NaN NaN NaN NaN NaN NaN 44.656 1 48.293 47.793 48.793 3.6372 0 0 0 0.53105 1 8461 8461 4.3292 1.594 1 + 7999 16945 4864 4869 9907 9907 0.0172603957685169 FIMAVLIYNP 10 Unmodified _FIMAVLIYNP_ 0 0 0 L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|141|2|anti-sense L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|141|2|anti-sense L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|141|2|anti-sense MSMS UPN48_class_I_Rep_3 7 590.5615844726562 2 590.825378 1179.6362 NaN NaN NaN NaN NaN NaN NaN 57.156 1 60.699 60.199 61.199 3.5427 0 0 0 0.53105 1 12270 12270 1.6526 0.17072 1 8000 9985 4865 4870 9908 9908 0.05357003816197903 FINHKYSA 8 Unmodified _FINHKYSA_ 0 0 0 LTR53_dup204|chr7:116876678-116877187:-|1.5091406764345796|0.013031631403335|6.86|151.0|31|3|anti-sense LTR53_dup204|chr7:116876678-116877187:-|1.5091406764345796|0.013031631403335|6.86|151.0|31|3|anti-sense LTR53_dup204|chr7:116876678-116877187:-|1.5091406764345796|0.013031631403335|6.86|151.0|31|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.25335693359375 2 490.253434 978.492316 -0.35455 -0.00017382 -0.34036 -0.00016686 -0.69491 -0.00034068 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 2 6475 6475;6519 2.5775 0 1 61780 8001 15674 4866 4871 9909;9910 9909 0.002209181002740479 FINKQARRG 9 Unmodified _FINKQARRG_ 0 0 0 REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|38|2|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.3165893554688 2 545.317432 1088.62031 0.48126 0.00026244 -1.1876 -0.00064764 -0.70637 -0.0003852 545.3163068763304 80.76 0.24117 84.405 84.241 84.482 3.6446 52 33 2 0 0 0 0.46869 1 19161 19161 3.9444 3.9444 1 245000 + 8002 27994 4867 4872 9911 9911 0.07954478414171717 FINKQARRG 9 Unmodified _FINKQARRG_ 0 0 0 REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|38|2|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|38|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.317432 1088.62031 0.37874 0.00020653 -1.2343 -0.0006731 -0.85559 -0.00046657 545.3166751446151 84.506 0.39342 84.506 84.159 84.553 0 0.12457 -2.8678E-06 NaN 3.9444 65 35 4 NaN NaN NaN NaN 0 NaN NaN 0 819640 + 8003 27994 4867 4872 0.07954478414171717 FINKQARRG 9 Unmodified _FINKQARRG_ 0 0 0 REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|38|2|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|38|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 545.317432 1088.62031 0.45912 0.00025036 -2.0711 -0.0011294 -1.612 -0.00087906 545.3160865297897 80.913 0.046967 84.233 84.2 84.247 3.3207 -0.14783 -0.00091551 NaN 3.9444 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 36053 + 8004 27994 4867 4872 0.07954478414171717 FINKQKAFK 9 Unmodified _FINKQKAFK_ 0 0 0 REV__L1ME4a_dup19800|chrX:70138503-70138975:-|1.1790001411539106|0.1471610350470862|3.0|151.0|23|2|anti-sense REV__L1ME4a_dup19800|chrX:70138503-70138975:-|1.1790001411539106|0.1471610350470862|3.0|151.0|23|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.19972 0.00011231 -0.00481 -2.7049E-06 0.19491 0.00010961 562.3347273685215 30.727 0.22034 30.727 30.653 30.873 0 19 17 2 0 0 0 0.50088 1 5031 5031 0.52476 0 1 306670 + 8005 28218 4868 4873 9912 9912 0.09854301502264207 FINKRVLDR 9 Unmodified _FINKRVLDR_ 0 0 0 REV__ENST00000606974.5_1_13:52749836-52760885:-|nuORF REV__ENST00000606974.5_1_13:52749836-52760885:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 580.84912109375 2 580.848564 1159.68258 0.40818 0.00023709 -0.24604 -0.00014291 0.16214 9.4181E-05 580.848323335369 44.994 0.68728 48.632 48.239 48.927 3.6371 64 46 2 0 0 0 0.46869 1 8545 8545 3.9444 0 1 133340 + 8006 23232 4869 4874 9913 9913 0.10912204762485089 FINRLPAI 8 Unmodified _FINRLPAI_ 0 0 0 REV__ENSG00000152520.14,PAN3,chr13,+,I7.1,28240038,28256291|41|15.09|1|intron REV__ENSG00000152520.14,PAN3,chr13,+,I7.1,28240038,28256291|41|15.09|1|intron MSMS UPN48_class_I_Rep_3 7 472.2878723144531 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 106.37 1 110.06 109.56 110.56 3.6899 0 0 0 0.40738 1 25086 25086 0.79363 0 1 + 8007 19685 4870 4875 9914 9914 0.09150671893678464 FINSENVFK 9 Unmodified _FINSENVFK_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MULTI-MSMS UPN48_class_I_Rep_3 7 549.2852172851562 2 549.284931 1096.55531 0.35154 0.0001931 0.21728 0.00011935 0.56882 0.00031244 549.2850114377869 47.125 0.47546 50.761 50.493 50.969 3.6363 46 34 2 0 0 0 0.43982 1 9249 9249 5.7319 0.43497 1 157750 8008 903 4871 4876 9915 9915 0.010894390976545765 FINTHHLSRT 10 Unmodified _FINTHHLSRT_ 0 0 0 L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|60|3|sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|60|3|sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|60|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 613.3253173828125 2 613.325454 1224.63635 0.49559 0.00030396 -1.7656 -0.0010829 -1.27 -0.00077894 613.324354903487 67.118 0.41685 70.569 70.288 70.704 3.4516 41 25 2 0 0 0 0.50947 1 15360 15360 10.899 1.9227 1 127700 8009 12960 4872 4877 9916 9916 0.033021398603978014 FIPCVRRY 8 Unmodified _FIPCVRRY_ 0 0 0 REV__L1PA17_dup3557|chr12:64476457-64477833:-|1.3935492096770257|0.0703622677481008|4.31|150.0|50|1|anti-sense REV__L1PA17_dup3557|chr12:64476457-64477833:-|1.3935492096770257|0.0703622677481008|4.31|150.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2863159179688 2 527.286754 1052.55896 NaN NaN NaN NaN NaN NaN NaN 26.087 1 29.853 29.353 30.353 3.7663 0 0 0 0.40738 1 3259 3259 0.79363 0 1 + 8010 29469 4873 4878 9917 9917 0.03477830390534109 FIPELKVIY 9 Unmodified _FIPELKVIY_ 0 0 0 L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|73|2|anti-sense L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|73|2|anti-sense L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|73|2|anti-sense MSMS UPN47_class_I_Rep_2 3 561.2706909179688 2 561.333893 1120.65323 NaN NaN NaN NaN NaN NaN NaN 54.287 1 57.605 57.105 58.105 3.3187 0 0 0 0.38299 1 12261 12261 4.756 0.42677 1 8011 9076 4874 4879 9918 9918 0.09773247693669873 FIPFFFMYM 9 Unmodified _FIPFFFMYM_ 0 0 0 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 MSMS UPN48_class_I_Rep_3 7 621.7903442382812 2 621.789949 1241.56535 NaN NaN NaN NaN NaN NaN NaN 25.67 1 29.439 28.939 29.939 3.769 0 0 0 0.40038 1 3158 3158 0.6015 0 1 8012 5063 4875 4880 9919 9919 -0.04577412492972144 FIPRGRVNQ 9 Unmodified _FIPRGRVNQ_ 0 0 0 REV__ENSG00000243477|ENST00000443094|NAA80 REV__ENSG00000243477|ENST00000443094|NAA80 MSMS UPN47_class_I_Rep_2 3 543.8316040039062 2 543.811982 1085.60941 NaN NaN NaN NaN NaN NaN NaN 66.475 1 69.734 69.234 70.234 3.2588 0 0 0 0.34056 1 15974 15974 8.5933 0.68312 1 + 8013 21335 4876 4881 9920 9920 0.07003076039904954 FIPYERFI 8 Unmodified _FIPYERFI_ 0 0 0 REV__ENST00000577417.5_1_17:26970598-26971143:-|nuORF REV__ENST00000577417.5_1_17:26970598-26971143:-|nuORF MSMS UPN47_class_I_Rep_3 4 542.775146484375 2 542.794935 1083.57532 NaN NaN NaN NaN NaN NaN NaN 56.707 1 59.88 59.38 60.38 3.1721 0 0 0 0.33253 1 13056 13056 26.341 5.4701 1 + 8014 23111 4877 4882 9921 9921 0.03687234828294095 FIQEIEHAL 9 Unmodified _FIQEIEHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-SECPEP UPN47_class_I_Rep_1 2 550.740966796875 2 550.292756 1098.57096 0.44724 0.00024611 -0.28834 -0.00015867 0.15889 8.7438E-05 550.2926759001527 59.65 0.66354 63.049 62.795 63.459 3.3982 89 40 3 0 0 0 0.035792 1 13850 13850 59.368 35.348 1 211360 8015 2717 4878 4883 9922 9922 0.025617256147143053 FIQEIEHAL 9 Unmodified _FIQEIEHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7410888671875 2 550.292756 1098.57096 0.48293 0.00026575 0.17277 9.5076E-05 0.6557 0.00036083 550.2929658500519 59.891 0.56816 63.164 62.916 63.484 3.2731 53 33 2 0 0 0 0.013822 1 13982 13982 72.968 42.331 1 215720 8016 2717 4878 4883 9923 9923 0.025617256147143053 FIQEIEHAL 9 Unmodified _FIQEIEHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7410278320312 2 550.292756 1098.57096 0.47274 0.00026014 -0.7211 -0.00039681 -0.24836 -0.00013667 550.2922454963622 60.371 0.27666 63.637 63.476 63.753 3.2654 23 17 2 0 0 0 0.11309 1 14101 14101 13.906 3.7227 1 70236 8017 2717 4878 4883 9924 9924 0.025617256147143053 FIQHIEKDG 9 Unmodified _FIQHIEKDG_ 0 0 0 REV__ENST00000491616.1_1_1:213415441-213415690:+|nuORF REV__ENST00000491616.1_1_1:213415441-213415690:+|nuORF MSMS UPN47_class_I_Rep_2 3 543.7822265625 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 47.034 1 50.385 49.885 50.885 3.3515 0 0 0 0.28335 1 10062 10062 11.64 0.81637 1 + 8018 19194 4879 4884 9925 9925 0.011205549548776617 FIQLSKPFKR 10 Unmodified _FIQLSKPFKR_ 0 0 0 REV__L1MB8_dup1556|chr2:73580240-73581681:-|1.0653272293208051|0.1128367560886305|3.24|151.0|82|2|anti-sense REV__L1MB8_dup1556|chr2:73580240-73581681:-|1.0653272293208051|0.1128367560886305|3.24|151.0|82|2|anti-sense MSMS UPN46_class_I_Rep_3 1 421.7522277832031 3 421.923919 1262.74993 NaN NaN NaN NaN NaN NaN NaN 32.376 1 32.376 31.876 32.876 0 0 0 0 0.53105 1 5531 5531 0.62683 0 1 + 8019 26379 4880 4885 9926 9926 0.1290623497343404 FIQVILLNIPF 11 Unmodified _FIQVILLNIPF_ 0 0 0 REV__ENST00000533478.5_1_16:81174978-81214887:-|nuORF REV__ENST00000533478.5_1_16:81174978-81214887:-|nuORF MSMS UPN48_class_I_Rep_1 5 439.60589599609375 3 439.604075 1315.7904 NaN NaN NaN NaN NaN NaN NaN 35.218 1 38.732 38.232 39.232 3.5144 0 0 0 0.38417 1 5733 5733 1.4551 0.24029 1 + 8020 22872 4881 4886 9927 9927 0.14513156573229935 FIRGVPQR 8 Unmodified _FIRGVPQR_ 0 0 0 REV__nc|ENSG00000189221|P21397-2|MAOA REV__nc|ENSG00000189221|P21397-2|MAOA MULTI-MSMS UPN48_class_I_Rep_1 5 486.7913818359375 2 486.790518 971.566484 0.18849 9.1754E-05 -0.50531 -0.00024598 -0.31682 -0.00015422 486.7903080704948 35.107 0.67238 38.621 38.372 39.045 3.5144 104 69 2 0 0 0 0.82752 1 5705 5705 2.5775 2.5775 1 125260 + 8021 21004 4882 4887 9928 9928 0.0795630598245225 FISFVLAGS 9 Unmodified _FISFVLAGS_ 0 0 0 L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|40|3|anti-sense L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|40|3|anti-sense L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|40|3|anti-sense MSMS UPN46_class_I_Rep_3 1 470.7605895996094 2 470.760561 939.506569 NaN NaN NaN NaN NaN NaN NaN 56.086 1 56.086 55.586 56.586 0 0 0 0 0.089203 1 12218 12218 26.884 0 1 8022 13338 4883 4888 9929 9929 0.03439570528564673 FISKHVHNED 10 Unmodified _FISKHVHNED_ 0 0 0 REV__L1ME4c_dup6464|chr12:109960613-109961141:-|1.0092692634850822|0.1145396569837284|3.14|151.0|25|1|anti-sense REV__L1ME4c_dup6464|chr12:109960613-109961141:-|1.0092692634850822|0.1145396569837284|3.14|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_2 3 613.298583984375 2 613.301644 1224.58874 NaN NaN NaN NaN NaN NaN NaN 66.851 1 70.115 69.615 70.615 3.2636 0 0 0 0.53105 1 16086 16086 4.897 1.9018 1 + 8023 28321 4884 4889 9930 9930 -0.01457559130426489 FISSGMIFVF 10 Unmodified _FISSGMIFVF_ 0 0 0 REV__nc|ENSG00000165102|Q68CP4|HGSNAT REV__nc|ENSG00000165102|Q68CP4|HGSNAT MSMS UPN48_class_I_Rep_1 5 574.2948608398438 2 574.296453 1146.57835 NaN NaN NaN NaN NaN NaN NaN 77.25 1 80.761 80.261 81.261 3.5102 0 0 0 0.53105 1 18376 18376 3.5965 0.8613 1 + 8024 20103 4885 4890 9931 9931 0.010927418907840547 FISSPPWVL 9 Unmodified _FISSPPWVL_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|116|2|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|116|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.2893676757812 2 523.289485 1044.56442 0.26898 0.00014076 -0.2312 -0.00012098 0.037783 1.9772E-05 523.2893003393347 66.389 1.1585 69.747 69.382 70.54 3.3576 231 83 4 0 0 0 0.23311 1 15880 15880 18.135 18.135 1 965270 + 8025 32418 4886 4891 9932 9932 0.04391832454007272 FISSPPWVL 9 Unmodified _FISSPPWVL_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|116|2|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|116|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.2894897460938 2 523.289485 1044.56442 -0.030635 -1.6031E-05 0.11868 6.2106E-05 0.088049 4.6075E-05 523.2894444791743 66.798 1.2709 70.057 69.579 70.85 3.2588 228 94 4 0 0 0 0.32219 1 16079 16079 12.532 12.532 1 1157500 + 8026 32418 4886 4891 9933 9933 0.04391832454007272 FISSPPWVL 9 Unmodified _FISSPPWVL_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|116|2|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|116|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 523.2896118164062 2 523.289485 1044.56442 0.33014 0.00017276 -0.28208 -0.00014761 0.048066 2.5152E-05 523.2892360585666 66.811 1.5834 69.996 69.622 71.206 3.1853 278 123 4 0 0 0 0.23311 1 16138 16138 18.135 18.135 1 935770 + 8027 32418 4886 4891 9934 9934 0.04391832454007272 FISTDENYR 9 Unmodified _FISTDENYR_ 0 0 0 REV__ENSG00000225830|ENST00000355832|ERCC6 REV__ENSG00000225830|ENST00000355832|ERCC6 MULTI-MSMS UPN47_class_I_Rep_1 2 572.7680053710938 2 572.767103 1143.51965 -0.048691 -2.7889E-05 -0.06375 -3.6514E-05 -0.11244 -6.4403E-05 572.7670603408924 39.433 0.64491 43.099 42.69 43.335 3.6668 69 45 2 0 0 0 0.49026 1 7659 7659 1.6526 0.17072 1 107540 + 8028 21291 4887 4892 9935 9935 -0.046366431500018734 FISVSLQNL 9 Unmodified _FISVSLQNL_ 0 0 0 MLT1J_dup7088|chr7:152423354-152423754:+|1.7037791813672938|0.0092727818508534|7.52|151.0|18|1|anti-sense MLT1J_dup7088|chr7:152423354-152423754:+|1.7037791813672938|0.0092727818508534|7.52|151.0|18|1|anti-sense MLT1J_dup7088|chr7:152423354-152423754:+|1.7037791813672938|0.0092727818508534|7.52|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7897033691406 2 510.78985 1019.56515 0.15046 7.6853E-05 -0.14189 -7.2475E-05 0.0085718 4.3784E-06 510.7897306376402 76.082 0.43433 79.404 79.072 79.506 3.3216 101 43 3 0 0 0 0.0068778 1 18842 18842 85.642 3.1122 1 496530 8029 16462 4888 4893 9936 9936 0.056146271030456774 FISWTYLK 8 Unmodified _FISWTYLK_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|51|2|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|51|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 529.2689208984375 2 529.289485 1056.56442 0.35013 0.00018532 -0.84815 -0.00044892 -0.49802 -0.0002636 529.7906937748786 62.044 0.085773 65.412 65.336 65.421 3.3681 10 5 2 0 0 0 0.72333 1 14582 14582 2.5775 0 1 61581 + 8030 23749 4889 4894 9937 9937 0.038398324539684836 FISYGKVYY 9 Unmodified _FISYGKVYY_ 0 0 0 REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|106|2|anti-sense REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|106|2|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2922973632812 2 570.292225 1138.5699 NaN NaN NaN NaN NaN NaN NaN 53.011 1 56.206 55.706 56.706 3.1948 0 0 0 0.13551 1 11923 11923 20.454 2.3073 1 + 8031 23726 4890 4895 9938 9938 0.006155112458145595 FISYGKVYY 9 Unmodified _FISYGKVYY_ 0 0 0 REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|106|2|anti-sense REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|106|2|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2902221679688 2 570.292225 1138.5699 NaN NaN NaN NaN NaN NaN NaN 53.153 1 56.348 55.848 56.848 3.1948 0 0 0 0.13551 1 11967 11967 20.454 6.9457 1 + 8032 23726 4890 4895 9939 9939 0.006155112458145595 FITEYDVNY 9 Unmodified _FITEYDVNY_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|172|2|anti-sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|172|2|anti-sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|172|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.265869140625 2 582.266404 1162.51826 0.36145 0.00021046 0.11583 6.7444E-05 0.47728 0.0002779 582.266332496856 56.733 1.1134 60.19 59.812 60.925 3.4572 206 93 3 0 0 0 0.20276 1 12902 12902 20.454 1.1966 1 658810 8033 10007 4891 4896 9940 9940 -0.05650277238760282 FITNRYVL 8 Unmodified _FITNRYVL_ 0 0 0 REV__L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|61|3|anti-sense REV__L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|61|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.292724609375 2 513.292559 1024.57057 0.38768 0.00019899 0.047732 2.45E-05 0.43541 0.0002235 513.2924359345736 62.243 0.73526 65.706 65.348 66.083 3.4625 140 56 3 0 0 0 0.82752 1 13845 13845 18.135 0 1 619020 + 8034 26222 4892 4897 9941 9941 0.05926350685513171 FITTSTKLTK 10 Unmodified _FITTSTKLTK_ 0 0 0 REV__ENST00000323468.9_1_11:108344225-108344408:-|nuORF REV__ENST00000323468.9_1_11:108344225-108344408:-|nuORF MSMS UPN46_class_I_Rep_3 1 570.339599609375 2 570.337164 1138.65977 NaN NaN NaN NaN NaN NaN NaN 56.119 1 56.119 55.619 56.619 0 0 0 0 0.53105 1 12227 12227 1.6526 0.85899 1 + 8035 21750 4893 4898 9942 9942 0.0959914085433411 FITVRHEFY 9 Unmodified _FITVRHEFY_ 0 0 0 REV__nc|ENSG00000134765|Q08554-2|DSC1 REV__nc|ENSG00000134765|Q08554-2|DSC1 MULTI-MSMS UPN48_class_I_Rep_1 5 606.8143310546875 2 606.314023 1210.61349 0.49893 0.00030251 -0.43147 -0.00026161 0.067456 4.0899E-05 606.3138219795661 56.4 0.61861 59.901 59.516 60.135 3.5014 89 49 2 0 0 0 0.46869 1 12194 12194 3.9444 0 1 158360 + 8036 19108 4894 4899 9943 9943 0.0166112074296052 FIVALFTIVKT 11 Unmodified _FIVALFTIVKT_ 0 0 0 L1PA5_dup7631|chr10:21781743-21785063:+|1.87603085763774|0.0579411724528763|5.02|151.0|51|2|sense;L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|51|1|sense L1PA5_dup7631|chr10:21781743-21785063:+|1.87603085763774|0.0579411724528763|5.02|151.0|51|2|sense L1PA5_dup7631|chr10:21781743-21785063:+|1.87603085763774|0.0579411724528763|5.02|151.0|51|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.8898315429688 2 626.389199 1250.76385 0.49479 0.00030993 -0.89497 -0.0005606 -0.40018 -0.00025067 626.8894759475826 105.58 0.19415 109.27 109.21 109.4 3.6901 42 26 2 0 0 0 0.65821 1 24982 24982 2.4985 0 1 383670 8037 14510 4895 4900 9944 9944 0.14849467681892747 FIVEETLPL 9 Unmodified _FIVEETLPL_ 0 0 0 nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 MULTI-MSMS UPN48_class_I_Rep_1 5 530.8001708984375 2 530.799883 1059.58521 0.34258 0.00018184 -0.21668 -0.00011502 0.12589 6.6823E-05 530.7996682228872 81.656 0.24344 85.231 85.057 85.301 3.5753 32 27 2 0 0 0 0.12799 2 19489 19456;19489 28.487 0 1 143860 8038 5386 4896 4901 9945;9946 9946 0.0578037804300493 FIVEETLPL 9 Unmodified _FIVEETLPL_ 0 0 0 nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 MULTI-MSMS UPN48_class_I_Rep_1 5 530.8014526367188 2 530.799883 1059.58521 0.34265 0.00018188 -0.066505 -3.5301E-05 0.27615 0.00014658 530.7998559820356 81.8 0.21759 85.376 85.279 85.497 3.5753 34 24 2 0 0 0 0.12799 1 19531 19531 28.487 0 1 120580 8039 5386 4896 4901 9947 9947 0.0578037804300493 FIVEETLPL 9 Unmodified _FIVEETLPL_ 0 0 0 nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 MULTI-MSMS UPN48_class_I_Rep_3 7 530.7992553710938 2 530.799883 1059.58521 0.53043 0.00028155 -0.12573 -6.6738E-05 0.4047 0.00021481 530.7996036919961 81.77 0.22746 85.455 85.256 85.483 3.685 36 25 2 0 0 0 0.09884 1 19365 19365 34.102 5.6156 1 162280 8040 5386 4896 4901 9948 9948 0.0578037804300493 FIVEETLPL 9 Unmodified _FIVEETLPL_ 0 0 0 nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 MSMS UPN48_class_I_Rep_3 7 530.7996215820312 2 530.799883 1059.58521 NaN NaN NaN NaN NaN NaN NaN 81.636 1 85.321 84.821 85.821 3.685 0 0 0 0.052575 1 19330 19330 36.044 7.5574 1 8041 5386 4896 4901 9949 9949 0.0578037804300493 FIVGWVIF 8 Unmodified _FIVGWVIF_ 0 0 0 REV__L1PA13_dup2800|chr5:87305206-87306626:+|2.5134260490684097|0.2283396888829129|3.46|151.0|64|1|anti-sense REV__L1PA13_dup2800|chr5:87305206-87306626:+|2.5134260490684097|0.2283396888829129|3.46|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.78216552734375 2 490.783839 979.553125 NaN NaN NaN NaN NaN NaN NaN 34.434 1 37.698 37.198 38.198 3.2639 0 0 0 0.40738 1 6261 6261 0.79363 0 1 + 8042 29091 4897 4902 9950 9950 0.06253055150500586 FIVIVAHYV 9 Unmodified _FIVIVAHYV_ 0 0 0 REV__ENSG00000156875|ENST00000370152|MFSD14A REV__ENSG00000156875|ENST00000370152|MFSD14A MSMS UPN47_class_I_Rep_2 3 530.82177734375 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 74.364 1 77.669 77.169 78.169 3.3048 0 0 0 0.39326 1 18321 18321 2.3027 0 1 + 8043 19808 4898 4903 9951 9951 0.08428111724970222 FIVIVAHYV 9 Unmodified _FIVIVAHYV_ 0 0 0 REV__ENSG00000156875|ENST00000370152|MFSD14A REV__ENSG00000156875|ENST00000370152|MFSD14A MSMS UPN47_class_I_Rep_3 4 530.8222045898438 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 74.453 1 77.699 77.199 78.199 3.2464 0 0 0 0.3264 1 18428 18428 9.3474 0 1 + 8044 19808 4898 4903 9952 9952 0.08428111724970222 FIVLCFIALR 10 Unmodified _FIVLCFIALR_ 0 0 0 Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|4|2|sense Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|4|2|sense Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|4|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8563842773438 2 597.857012 1193.69947 0.48307 0.0002888 -0.8963 -0.00053586 -0.41323 -0.00024706 597.8564302503978 84.336 0.051224 88.029 88.001 88.053 3.6937 9 6 2 0 0 0 0.56309 1 20074 20074 1.6526 0.32309 1 111140 8045 33144 4899 4904 9953 9953 0.11036989324088609 FIVRAHHRA 9 Unmodified _FIVRAHHRA_ 0 0 0 REV__AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|13|2|anti-sense REV__AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|13|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 554.2684936523438 2 553.820141 1105.62573 0.40237 0.00022284 1.7159 0.00095032 2.1183 0.0011732 553.8210969021625 73.421 0.13377 76.807 76.736 76.87 3.3861 13 11 2 0 0 0 0.11425 1 18010 18010 12.532 12.532 1 48424 + 8046 17182 4900 4905 9954 9954 0.07714201996645897 FIVRAHHRA 9 Unmodified _FIVRAHHRA_ 0 0 0 REV__AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|13|2|anti-sense REV__AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|13|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 553.820141 1105.62573 0.38764 0.00021468 8.8405 0.004896 9.2281 0.0051107 553.8266206615006 77.194 0.026047 77.194 77.173 77.199 0 0.19357 0.0078072 NaN 12.532 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 165130 + 8047 17182 4900 4905 0.07714201996645897 FIVSEYVKF 9 Unmodified _FIVSEYVKF_ 0 0 0 REV__L1MB7_dup17747|chr14:101860015-101860815:-|1.3857046107551485|0.0301194352561439|5.52|151.0|34|1|anti-sense REV__L1MB7_dup17747|chr14:101860015-101860815:-|1.3857046107551485|0.0301194352561439|5.52|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_1 5 566.7918090820312 2 566.307875 1130.6012 NaN NaN NaN NaN NaN NaN NaN 72.021 1 75.494 74.994 75.994 3.4732 0 0 0 0.38639 1 16877 16877 3.9444 1.6417 1 + 8048 26173 4901 4906 9955 9955 0.04112084279881856 FIVTTNQYP 9 Unmodified _FIVTTNQYP_ 0 0 0 REV__L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|22|1|sense REV__L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7794799804688 2 541.779482 1081.54441 0.45113 0.00024441 -0.15422 -8.3553E-05 0.29691 0.00016086 541.7792880663577 67.953 0.45505 71.405 71.203 71.658 3.4517 54 36 2 0 0 0 0.41259 1 15687 15687 7.2892 0 1 106900 + 8049 25244 4902 4907 9956 9956 0.006900367233583893 FIVVCERKL 9 Unmodified _FIVVCERKL_ 0 0 0 ENST00000520859.5_1_8:91017683-91017779:+|nuORF ENST00000520859.5_1_8:91017683-91017779:+|nuORF ENST00000520859.5_1_8:91017683-91017779:+|nuORF MSMS UPN47_class_I_Rep_1 2 553.8222045898438 2 553.823169 1105.63179 NaN NaN NaN NaN NaN NaN NaN 73.766 1 77.152 76.652 77.652 3.3861 0 0 0 0.37891 1 18124 18124 5.7319 0 1 8050 7226 4903 4908 9957 9957 0.08319539393278319 FIVVPCCFPN 10 Unmodified _FIVVPCCFPN_ 0 0 0 L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|155|2|anti-sense L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|155|2|anti-sense L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|155|2|anti-sense MSMS UPN47_class_I_Rep_3 4 569.7759399414062 2 569.774831 1137.53511 NaN NaN NaN NaN NaN NaN NaN 64.641 1 67.815 67.315 68.315 3.1741 0 0 0 0.53105 1 15473 15473 3.9444 0.66309 1 8051 15081 4904 4909 9958 9958 -0.028157711581570766 FIWKQKRAYIA 11 Unmodified _FIWKQKRAYIA_ 0 0 0 L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|6|1|sense L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|6|1|sense L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|6|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.76080322265625 3 475.278473 1422.81359 0.19145 9.0991E-05 0.12064 5.7339E-05 0.31209 0.00014833 475.6130796851117 64.933 0.16716 64.933 64.888 65.055 0 22 17 2 0 0 0 22.551 1 14676 14676 0.50596 0 1 110730 8052 14848 4905 4910 9959 9959 0.11909595410588736 FIYARPRC 8 Unmodified _FIYARPRC_ 0 0 0 REV__ENSG00000145002|ENST00000262365|FAM86B2 REV__ENSG00000145002|ENST00000262365|FAM86B2 MSMS UPN46_class_I_Rep_3 1 513.42431640625 2 513.271104 1024.52766 NaN NaN NaN NaN NaN NaN NaN 67.253 1 67.253 66.753 67.753 0 0 0 0 0.39408 1 15299 15299 10.183 1.5901 1 + 8053 19501 4906 4911 9960 9960 0.01637257356446753 FIYCCWDC 8 Unmodified _FIYCCWDC_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|83|3|sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|83|3|sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|83|3|sense MSMS UPN47_class_I_Rep_1 2 526.7670288085938 2 526.687367 1051.36018 NaN NaN NaN NaN NaN NaN NaN 117.01 1 120.61 120.11 121.11 3.6036 0 0 0 0.40738 1 28993 28993 0.79363 0 1 8054 12674 4907 4912 9961 9961 -0.16344514294860346 FIYCCWDC 8 Unmodified _FIYCCWDC_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|83|3|sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|83|3|sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|83|3|sense MSMS UPN47_class_I_Rep_2 3 526.8218383789062 2 526.687367 1051.36018 NaN NaN NaN NaN NaN NaN NaN 118.9 1 122.38 121.88 122.88 3.4793 0 0 0 0.40738 1 29109 29109 0.79363 0 1 8055 12674 4907 4912 9962 9962 -0.16344514294860346 FIYFFIGSD 9 Unmodified _FIYFFIGSD_ 0 0 0 REV__L1MEc_dup3988|chr3:121779075-121780426:-|1.1658522120267798|0.0943819518800576|3.63|151.0|59|1|anti-sense REV__L1MEc_dup3988|chr3:121779075-121780426:-|1.1658522120267798|0.0943819518800576|3.63|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.7693481445312 2 554.771126 1107.5277 NaN NaN NaN NaN NaN NaN NaN 60.696 1 63.861 63.361 64.361 3.1651 0 0 0 0.24828 1 14269 14269 13.508 0.97634 1 + 8056 28445 4908 4913 9963 9963 -0.02176464162562297 FIYGKRHG 8 Unmodified _FIYGKRHG_ 0 0 0 L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|164|2|anti-sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|164|2|anti-sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|164|2|anti-sense MSMS UPN47_class_I_Rep_3 4 489.2684631347656 2 489.269419 976.524284 NaN NaN NaN NaN NaN NaN NaN 34.602 1 37.866 37.366 38.366 3.2639 0 0 0 0.40581 1 6310 6310 2.8892 0 1 8057 9592 4909 4914 9964 9964 0.03508330574084084 FIYLLFEDR 9 Unmodified _FIYLLFEDR_ 0 0 0 REV__ENSG00000077943|ENST00000378076|ITGA8 REV__ENSG00000077943|ENST00000378076|ITGA8 MSMS UPN48_class_I_Rep_2 6 405.8840026855469 3 405.88513 1214.63356 NaN NaN NaN NaN NaN NaN NaN 65.987 1 69.474 68.974 69.974 3.4866 0 0 0 0.3979 1 15041 15041 1.1933 0.68739 1 + 8058 17882 4910 4915 9965 9965 0.03482871682899713 FIYMCGVLMH 10 Unmodified _FIYMCGVLMH_ 0 0 0 REV__L1PA15_dup4227|chr9:21899812-21901179:+|1.3686055864492748|0.0737080890930778|4.21|151.0|51|1|anti-sense REV__L1PA15_dup4227|chr9:21899812-21901179:+|1.3686055864492748|0.0737080890930778|4.21|151.0|51|1|anti-sense MSMS UPN46_class_I_Rep_3 1 607.2832641601562 2 607.281966 1212.54938 NaN NaN NaN NaN NaN NaN NaN 31.038 1 31.038 30.538 31.538 0 0 0 0 0.53105 1 5136 5136 0.45834 0.057624 1 + 8059 29245 4911 4916 9966 9966 -0.0483944200152564 FIYRNVVI 8 Unmodified _FIYRNVVI_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.3026733398438 2 512.302927 1022.5913 0.24535 0.00012569 0.26327 0.00013488 0.50862 0.00026057 512.8045202416621 57.583 0.45221 61.02 60.837 61.289 3.437 45 35 2 0 0 0 0.82752 2 13225 13225;13274 19.439 0 1 80646 8060 15374 4912 4917 9967;9968 9967 0.08090941065177049 FIYRNVVI 8 Unmodified _FIYRNVVI_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 512.3028564453125 2 512.302927 1022.5913 0.19293 9.8836E-05 -0.058638 -3.0041E-05 0.13429 6.8796E-05 512.804528871235 57.861 0.36784 61.152 61.008 61.376 3.2912 47 29 2 0 0 0 0.72333 1 13409 13409 19.439 0 1 94182 8061 15374 4912 4917 9969 9969 0.08090941065177049 FIYRNVVI 8 Unmodified _FIYRNVVI_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|103|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.3033447265625 2 512.302927 1022.5913 0.17264 8.8442E-05 0.33283 0.00017051 0.50546 0.00025895 512.3030547371492 58.112 0.52881 61.28 61.049 61.578 3.1681 50 32 2 0 0 0 0.82752 2 13463 13463;13510 19.439 0 1 73453 8062 15374 4912 4917 9970;9971 9970 0.08090941065177049 FIYSKVLQD 9 Unmodified _FIYSKVLQD_ 0 0 0 L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|13|2|sense L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|13|2|sense L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 556.8004760742188 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.107 1 64.585 64.085 65.085 3.4785 0 0 0 0.32573 1 13547 13547 9.3831 0.78985 1 8063 12933 4913 4918 9972 9972 0.040028962745282115 FIYVKFVN 8 Unmodified _FIYVKFVN_ 0 0 0 REV__L1MB8_dup15848|chr20:43519916-43520740:-|1.068982143843286|0.3526968164393456|1.6|150.0|43|2|anti-sense REV__L1MB8_dup15848|chr20:43519916-43520740:-|1.068982143843286|0.3526968164393456|1.6|150.0|43|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.2926635742188 2 515.292028 1028.5695 0.31846 0.0001641 0.06235 3.2128E-05 0.38081 0.00019623 515.2921547640929 67.13 0.1814 70.581 70.496 70.677 3.4516 16 11 2 0 0 0 0.82752 1 15428 15428 14.582 2.0501 1 57872 + 8064 26387 4914 4919 9973 9973 0.05636136316616103 FIYVKFVN 8 Unmodified _FIYVKFVN_ 0 0 0 REV__L1MB8_dup15848|chr20:43519916-43520740:-|1.068982143843286|0.3526968164393456|1.6|150.0|43|2|anti-sense REV__L1MB8_dup15848|chr20:43519916-43520740:-|1.068982143843286|0.3526968164393456|1.6|150.0|43|2|anti-sense MSMS UPN48_class_I_Rep_3 7 515.292236328125 2 515.292028 1028.5695 NaN NaN NaN NaN NaN NaN NaN 66.808 1 70.316 69.816 70.816 3.5077 0 0 0 0.36148 1 15203 15203 19.439 1.304 1 + 8065 26387 4914 4919 9974 9974 0.05636136316616103 FKALAPLLR 9 Unmodified _FKALAPLLR_ 0 0 0 ENSG00000179922|ENST00000325351|ZNF784;ENST00000591479.1_1_19:56133119-56135920:-|nuORF ENSG00000179922|ENST00000325351|ZNF784 ENSG00000179922|ENST00000325351|ZNF784 MSMS UPN48_class_I_Rep_2 6 514.8350830078125 2 514.834394 1027.65424 NaN NaN NaN NaN NaN NaN NaN 68.516 1 72.024 71.524 72.524 3.5083 0 0 0 0.39428 1 15807 15807 2.0598 1.3694 1 8066 4875 4915 4920 9975 9975 0.1415150685320441 FKAVETKKY 9 Unmodified _FKAVETKKY_ 0 0 0 REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|270|2|anti-sense REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|270|2|anti-sense MSMS UPN47_class_I_Rep_3 4 557.3198852539062 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 99.042 1 102.47 101.97 102.97 3.4328 0 0 0 0.3967 1 24507 24507 1.4819 0.28856 1 + 8067 23569 4916 4921 9976 9976 0.07118889028470221 FKCDGCQRK 9 Unmodified _FKCDGCQRK_ 0 0 0 REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP MSMS UPN47_class_I_Rep_3 4 542.757080078125 2 542.754961 1083.49537 NaN NaN NaN NaN NaN NaN NaN 31.427 1 34.726 34.226 35.226 3.2991 0 0 0 0.38478 1 5354 5354 4.3292 1.7518 1 + 8068 20344 4917 4922 9977 9977 -0.04303898108855719 FKCFCEFY 8 Unmodified _FKCFCEFY_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|100|3|anti-sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|100|3|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7238159179688 2 543.724806 1085.43506 NaN NaN NaN NaN NaN NaN NaN 115.79 1 119.38 118.88 119.88 3.5943 0 0 0 0.40746 1 28657 28657 0.69038 0 1 + 8069 27896 4918 4923 9978 9978 -0.10424008491941095 FKCFTCENAGD 11 Unmodified _FKCFTCENAGD_ 0 0 0 nc|ENSG00000150556|Q8NI32|LYPD6B;ENSG00000150556|ENST00000409642|LYPD6B;ENST00000498249.1_1_2:150061334-150071221:+|nuORF nc|ENSG00000150556|Q8NI32|LYPD6B nc|ENSG00000150556|Q8NI32|LYPD6B MSMS UPN47_class_I_Rep_2 3 617.7442626953125 2 617.746998 1233.47944 NaN NaN NaN NaN NaN NaN NaN 43.033 1 46.391 45.891 46.891 3.358 0 0 0 0.38417 1 8836 8836 1.0715 0.46996 1 8070 3565 4919 4924 9979 9979 -0.12795649136432985 FKCPDCYL 8 Unmodified _FKCPDCYL_ 0 0 0 ENST00000394628.2_1_10:79492938-79493973:+|nuORF ENST00000394628.2_1_10:79492938-79493973:+|nuORF ENST00000394628.2_1_10:79492938-79493973:+|nuORF MSMS UPN46_class_I_Rep_3 1 494.7190246582031 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 116.04 1 116.04 115.54 116.54 0 0 0 0 0.40604 1 28714 28714 2.5775 1.7838 1 8071 6545 4920 4925 9980 9980 -0.07480295009008842 FKEEFVPIL 9 Unmodified _FKEEFVPIL_ 0 0 0 L1PB1_dup12849|chr22:19339652-19341034:+|1.1117909342076813|0.2249483839452837|2.31|151.0|37|3|sense;L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|98|2|sense L1PB1_dup12849|chr22:19339652-19341034:+|1.1117909342076813|0.2249483839452837|2.31|151.0|37|3|sense L1PB1_dup12849|chr22:19339652-19341034:+|1.1117909342076813|0.2249483839452837|2.31|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.3156127929688 2 561.3157 1120.61685 0.42467 0.00023837 -0.033415 -1.8756E-05 0.39126 0.00021962 561.3155774240071 95.02 0.52445 98.922 98.755 99.279 3.9016 81 68 2 0 0 0 0.10817 1 22582 22582 32.305 0 1 127010 8072 15048 4921 4926 9981 9981 0.06136370796957635 FKEEFVPIL 9 Unmodified _FKEEFVPIL_ 0 0 0 L1PB1_dup12849|chr22:19339652-19341034:+|1.1117909342076813|0.2249483839452837|2.31|151.0|37|3|sense;L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|98|2|sense L1PB1_dup12849|chr22:19339652-19341034:+|1.1117909342076813|0.2249483839452837|2.31|151.0|37|3|sense L1PB1_dup12849|chr22:19339652-19341034:+|1.1117909342076813|0.2249483839452837|2.31|151.0|37|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 561.3157 1120.61685 0.44715 0.00025099 0.90287 0.0005068 1.35 0.00075779 561.8176065583061 95.072 0.041023 98.688 98.678 98.719 3.6167 -0.1166 0.00089856 NaN 32.305 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 114480 8073 15048 4921 4926 0.06136370796957635 FKEKYVWK 8 Unmodified _FKEKYVWK_ 0 0 0 ENST00000295951.7_1_3:57913451-57913754:+|nuORF ENST00000295951.7_1_3:57913451-57913754:+|nuORF ENST00000295951.7_1_3:57913451-57913754:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.2947387695312 2 564.316035 1126.61752 NaN NaN NaN NaN NaN NaN NaN 36.258 1 39.768 39.268 40.268 3.5101 0 0 0 0.40746 1 6033 6033 0.69038 0.088878 1 8074 6058 4922 4927 9982 9982 0.05927210236654901 FKELGWDDWI 10 Unmodified _FKELGWDDWI_ 0 0 0 ENSG00000143869|ENST00000272224|GDF7;ENSG00000156466|ENST00000287020|GDF6 ENSG00000143869|ENST00000272224|GDF7 ENSG00000143869|ENST00000272224|GDF7 MSMS UPN48_class_I_Rep_1 5 436.8794860839844 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 88.574 1 92.197 91.697 92.697 3.6229 0 0 0 0.53105 1 21250 21250 0.62683 0.063655 1 8075 3332 4923 4928 9983 9983 -0.022866201851002188 FKERRRCRRW 10 Unmodified _FKERRRCRRW_ 0 0 0 REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A MSMS UPN47_class_I_Rep_2 3 498.2550354003906 3 498.277472 1491.81059 NaN NaN NaN NaN NaN NaN NaN 23.91 1 27.376 26.876 27.876 3.4655 0 0 0 0.53105 1 3084 3084 0.15932 0.064481 1 + 8076 17534 4924 4929 9984 9984 0.08435441804726906 FKFFVFLV 8 Unmodified _FKFFVFLV_ 0 0 0 AluSz_dup32297|chr6:25100798-25101118:+|1.456939088834208|0.2741256300895273|2.41|151.0|23|3|anti-sense AluSz_dup32297|chr6:25100798-25101118:+|1.456939088834208|0.2741256300895273|2.41|151.0|23|3|anti-sense AluSz_dup32297|chr6:25100798-25101118:+|1.456939088834208|0.2741256300895273|2.41|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_2 6 523.6781005859375 2 523.807314 1045.60008 NaN NaN NaN NaN NaN NaN NaN 78.368 1 81.99 81.49 82.49 3.6222 0 0 0 0.40604 1 18590 18590 2.5775 0 1 8077 347 4925 4930 9985 9985 0.07909914701644993 FKFKQRWFV 9 Unmodified _FKFKQRWFV_ 0 0 0 ENST00000261497.8_1_17:20905054-20905168:-|nuORF ENST00000261497.8_1_17:20905054-20905168:-|nuORF ENST00000261497.8_1_17:20905054-20905168:-|nuORF MSMS UPN48_class_I_Rep_1 5 643.3631591796875 2 643.36385 1284.71315 NaN NaN NaN NaN NaN NaN NaN 57.799 1 61.293 60.793 61.793 3.4942 0 0 0 0.39428 1 12554 12554 2.0598 0 1 8078 5959 4926 4931 9986 9986 0.08217983147551422 FKFLIKKKKLL 11 Unmodified _FKFLIKKKKLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 469.32843017578125 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 24.878 1 24.878 24.378 25.378 0 0 0 0 0.38417 1 3328 3328 0.094841 0 1 + 8079 17065 4927 4932 9987 9987 0.2721826355768826 FKFLIKKKKLL 11 Unmodified _FKFLIKKKKLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 469.3283386230469 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 25.731 1 25.731 25.231 26.231 0 0 0 0 0.38417 1 3574 3574 0.094841 0 1 + 8080 17065 4927 4932 9988 9988 0.2721826355768826 FKFLIKKKKLL 11 Unmodified _FKFLIKKKKLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 469.3290100097656 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 26.841 1 26.841 26.341 27.341 0 0 0 0 0.38417 1 3900 3900 0.094841 0 1 + 8081 17065 4927 4932 9989 9989 0.2721826355768826 FKFLIKKKKLL 11 Unmodified _FKFLIKKKKLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 469.80718994140625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 111.27 1 111.27 110.77 111.77 0 0 0 0 0.38417 1 27427 27427 0.094841 0 1 + 8082 17065 4927 4932 9990 9990 0.2721826355768826 FKFLIKKKKLL 11 Unmodified _FKFLIKKKKLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 469.32843017578125 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 94.894 1 98.645 98.145 99.145 3.7508 0 0 0 0.38417 1 23564 23564 0.094841 0 1 + 8083 17065 4927 4932 9991 9991 0.2721826355768826 FKFLIKKKKLL 11 Unmodified _FKFLIKKKKLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 469.3287658691406 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 22.878 1 26.439 25.939 26.939 3.5605 0 0 0 0.38417 1 2297 2297 0.08335 0.08335 1 + 8084 17065 4927 4932 9992 9992 0.2721826355768826 FKFQEIALS 9 Unmodified _FKFQEIALS_ 0 0 0 REV__Tigger12c_dup226|chr4:75794463-75794630:-|1.2084060696683214|0.2392801784073554|2.34|151.0|16|3|anti-sense REV__Tigger12c_dup226|chr4:75794463-75794630:-|1.2084060696683214|0.2392801784073554|2.34|151.0|16|3|anti-sense MSMS UPN47_class_I_Rep_1 2 541.797607421875 2 541.797675 1081.5808 NaN NaN NaN NaN NaN NaN NaN 29.194 1 32.952 32.452 33.452 3.7578 0 0 0 0.39518 1 4603 4603 1.8442 0 1 + 8085 32581 4928 4933 9993 9993 0.04326913620070627 FKFQFWTV 8 Unmodified _FKFQFWTV_ 0 0 0 L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|154|2|anti-sense L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|154|2|anti-sense L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|154|2|anti-sense MSMS UPN48_class_I_Rep_3 7 551.7872924804688 2 551.789653 1101.56475 NaN NaN NaN NaN NaN NaN NaN 41.05 1 44.696 44.196 45.196 3.6458 0 0 0 0.40604 1 7371 7371 2.5775 0.27475 1 8086 12416 4929 4934 9994 9994 0.018032521738405194 FKFRAKFY 8 Unmodified _FKFRAKFY_ 0 0 0 ENSG00000147065|ENST00000360270|MSN;ENSG00000092820|ENST00000367075|EZR ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MSMS UPN46_class_I_Rep_3 1 553.8125 2 553.810919 1105.60729 NaN NaN NaN NaN NaN NaN NaN 29.262 1 29.262 28.762 29.762 0 0 0 0 0.40746 1 4609 4609 0.69038 0 1 8087 3458 4930 4935 9995 9995 0.05870647302094767 FKFRCQHY 8 Unmodified _FKFRCQHY_ 0 0 0 REV__HAL1_dup20636|chr17:61708588-61709388:-|1.072253706606002|0.0070969708109357|7.24|150.0|58|3|anti-sense REV__HAL1_dup20636|chr17:61708588-61709388:-|1.072253706606002|0.0070969708109357|7.24|150.0|58|3|anti-sense MSMS UPN46_class_I_Rep_3 1 564.7744140625 2 564.774011 1127.53347 NaN NaN NaN NaN NaN NaN NaN 15.349 1 15.349 14.849 15.849 0 0 0 0 0.40746 1 857 857 0.69038 0 1 + 8088 23398 4931 4936 9996 9996 -0.025196441318939833 FKFVFNIY 8 Unmodified _FKFVFNIY_ 0 0 0 L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|63|1|anti-sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|63|1|anti-sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|63|1|anti-sense MSMS UPN48_class_I_Rep_1 5 539.2898559570312 2 539.292028 1076.5695 NaN NaN NaN NaN NaN NaN NaN 58.881 1 62.368 61.868 62.868 3.487 0 0 0 0.39996 1 12888 12888 7.9102 2.1783 1 8089 13375 4932 4937 9997 9997 0.03428136316620112 FKGFGMAFEL 10 Unmodified _FKGFGMAFEL_ 0 0 0 REV__L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|123|3|anti-sense REV__L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|123|3|anti-sense MSMS UPN48_class_I_Rep_1 5 573.7850952148438 2 573.786253 1145.55795 NaN NaN NaN NaN NaN NaN NaN 43.95 1 47.464 46.964 47.964 3.5132 0 0 0 0.53105 1 8308 8308 2.9952 0.41776 1 + 8090 28785 4933 4938 9998 9998 -0.009004287690459023 FKGRHVAK 8 Unmodified _FKGRHVAK_ 0 0 0 REV__L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|99|2|sense REV__L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|99|2|sense MSMS UPN47_class_I_Rep_1 2 471.79534912109375 2 471.785236 941.555919 NaN NaN NaN NaN NaN NaN NaN 55.731 1 59.21 58.71 59.71 3.4785 0 0 0 0.4044 1 12673 12673 4.756 0 1 + 8091 29768 4934 4939 9999 9999 0.08280323328028771 FKHPMHLYK 9 Unmodified _FKHPMHLYK_ 0 0 0 REV__L1ME3C_dup2715|chr14:102323722-102324088:+|1.1608230167650069|0.3268357184878172|1.83|151.0|8|2|sense REV__L1ME3C_dup2715|chr14:102323722-102324088:+|1.1608230167650069|0.3268357184878172|1.83|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 600.8199462890625 2 600.820961 1199.62737 NaN NaN NaN NaN NaN NaN NaN 64.376 1 67.55 67.05 68.05 3.1741 0 0 0 0.39518 1 15392 15392 1.8442 0.36234 1 + 8092 28096 4935 4940 10000 10000 0.03554074970384136 FKHRQYNK 8 Unmodified _FKHRQYNK_ 0 0 0 L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|207|3|sense L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|207|3|sense L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|207|3|sense MSMS UPN47_class_I_Rep_3 4 560.8024291992188 2 560.804157 1119.59376 NaN NaN NaN NaN NaN NaN NaN 82.935 1 86.272 85.772 86.772 3.337 0 0 0 0.40625 1 20793 20793 2.3027 1.5091 1 8093 9380 4936 4941 10001 10001 0.03874789522842548 FKIWWFGF 8 Unmodified _FKIWWFGF_ 0 0 0 L1M4_dup18603|chr18:21034062-21035234:+|1.0082258839352627|0.0271038952453674|5.22|151.0|63|3|anti-sense L1M4_dup18603|chr18:21034062-21035234:+|1.0082258839352627|0.0271038952453674|5.22|151.0|63|3|anti-sense L1M4_dup18603|chr18:21034062-21035234:+|1.0082258839352627|0.0271038952453674|5.22|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 565.3106079101562 2 565.794738 1129.57492 NaN NaN NaN NaN NaN NaN NaN 33.747 1 37.427 36.927 37.927 3.6797 0 0 0 0.40738 1 5287 5287 0.79363 0.10326 1 8094 8875 4937 4942 10002 10002 0.01531859899068877 FKKAIWPCF 9 Unmodified _FKKAIWPCF_ 0 0 0 L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|251|2|anti-sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|251|2|anti-sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|251|2|anti-sense MSMS UPN48_class_I_Rep_2 6 570.307373046875 2 570.307155 1138.59976 NaN NaN NaN NaN NaN NaN NaN 31.018 1 34.653 34.153 35.153 3.6351 0 0 0 0.40038 1 4617 4617 0.6015 0 1 8095 13721 4938 4943 10003 10003 0.0360017171014988 FKKIRLQLKIA 11 Unmodified _FKKIRLQLKIA_ 0 0 0 REV__L1PA4_dup915|chr2:24800324-24806471:-|2.3551848602869825|0.1442131700580088|4.03|151.0|75|2|sense REV__L1PA4_dup915|chr2:24800324-24806471:-|2.3551848602869825|0.1442131700580088|4.03|151.0|75|2|sense MSMS UPN47_class_I_Rep_2 3 453.3059997558594 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 118.5 1 121.98 121.48 122.48 3.4822 0 0 0 0.38417 1 28999 28999 0.08335 0.010087 1 + 8096 29690 4939 4944 10004 10004 0.23275331858417303 FKKLLLLLLL 10 Unmodified _FKKLLLLLLL_ 0 0 0 L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|80|2|anti-sense L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|80|2|anti-sense L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|80|2|anti-sense MSMS UPN46_class_I_Rep_3 1 607.4374389648438 2 607.435953 1212.85735 NaN NaN NaN NaN NaN NaN NaN 59.922 1 59.922 59.422 60.422 0 0 0 0 0.53105 1 13272 13272 0 0 1 8097 11694 4940 4945 10005 10005 0.25943811855017884 FKKNRKKYY 9 Unmodified _FKKNRKKYY_ 0 0 0 L1MEf_dup513|chr1:176155312-176156915:+|1.4844844739078713|0.0100697407511101|7.2|151.0|57|3|sense L1MEf_dup513|chr1:176155312-176156915:+|1.4844844739078713|0.0100697407511101|7.2|151.0|57|3|sense L1MEf_dup513|chr1:176155312-176156915:+|1.4844844739078713|0.0100697407511101|7.2|151.0|57|3|sense MSMS UPN48_class_I_Rep_1 5 637.8742065429688 2 637.87204 1273.72953 NaN NaN NaN NaN NaN NaN NaN 102.99 1 106.61 106.11 107.11 3.6164 0 0 0 0.39518 1 24827 24827 1.8442 0.36234 1 8098 13291 4941 4946 10006 10006 0.1036106431367898 FKKPVRPV 8 Unmodified _FKKPVRPV_ 0 0 0 ENSG00000164045|ENST00000302506|CDC25A ENSG00000164045|ENST00000302506|CDC25A ENSG00000164045|ENST00000302506|CDC25A MULTI-MSMS UPN47_class_I_Rep_2 3 486.3155517578125 2 485.813462 969.612371 0.17967 8.7288E-05 -1.4467 -0.00070281 -1.267 -0.00061552 485.811701731913 64.886 0.60949 68.141 67.867 68.477 3.2556 78 49 3 0 0 0 0.82752 2 15539 15539;15566 0.69038 0 1 597530 8099 4070 4942 4947 10007;10008 10007 0.12634951164704944 FKKYVYYL 8 Unmodified _FKKYVYYL_ 0 0 0 REV__Tigger3b_dup5655|chr16:68136623-68137368:-|1.2229700276284494|0.0118382347475273|6.69|151.0|35|1|anti-sense REV__Tigger3b_dup5655|chr16:68136623-68137368:-|1.2229700276284494|0.0118382347475273|6.69|151.0|35|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3343505859375 2 562.312961 1122.61137 NaN NaN NaN NaN NaN NaN NaN 61.946 1 61.946 61.446 62.446 0 0 0 0 0.40581 1 13821 13821 2.8892 0.58649 1 + 8100 32757 4943 4948 10009 10009 0.05496692005135628 FKLEDFYSAS 10 Unmodified _FKLEDFYSAS_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MSMS UPN48_class_I_Rep_3 7 603.7885131835938 2 603.787504 1205.56045 NaN NaN NaN NaN NaN NaN NaN 69.037 1 72.547 72.047 73.047 3.5094 0 0 0 0.53105 1 15873 15873 1.3295 0 1 8101 3013 4944 4949 10010 10010 -0.03410301830354001 FKLHYTWY 8 Unmodified _FKLHYTWY_ 0 0 0 Tigger2_dup2363|chr15:52469161-52470369:-|1.0241362830831682|0.0078318250537535|7.03|150.0|1|1|sense Tigger2_dup2363|chr15:52469161-52470369:-|1.0241362830831682|0.0078318250537535|7.03|150.0|1|1|sense Tigger2_dup2363|chr15:52469161-52470369:-|1.0241362830831682|0.0078318250537535|7.03|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 579.2928466796875 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 42.16 1 45.84 45.34 46.34 3.6792 0 0 0 0.40364 1 8542 8542 5.7604 0.52976 1 8102 33300 4945 4950 10011 10011 -0.0014564931448148855 FKLINLPI 8 Unmodified _FKLINLPI_ 0 0 0 REV__L1MEc_dup14290|chr13:46139861-46141126:+|5.771552020092962|0.0961959389289277|5.91|151.0|79|3|anti-sense REV__L1MEc_dup14290|chr13:46139861-46141126:+|5.771552020092962|0.0961959389289277|5.91|151.0|79|3|anti-sense MSMS UPN48_class_I_Rep_3 7 479.3091125488281 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 50.848 1 54.459 53.959 54.959 3.6105 0 0 0 0.4044 1 10360 10360 4.756 0 1 + 8103 28378 4946 4951 10012 10012 0.12585013213322327 FKLRLLLYKK 10 Unmodified _FKLRLLLYKK_ 0 0 0 L1MC1_dup5184|chr6:57119939-57121542:-|1.3673557124299285|0.2173022289885428|2.65|151.0|92|2|anti-sense L1MC1_dup5184|chr6:57119939-57121542:-|1.3673557124299285|0.2173022289885428|2.65|151.0|92|2|anti-sense L1MC1_dup5184|chr6:57119939-57121542:-|1.3673557124299285|0.2173022289885428|2.65|151.0|92|2|anti-sense MSMS UPN46_class_I_Rep_3 1 441.29754638671875 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 78.911 1 78.911 78.411 79.411 0 0 0 0 0.53105 1 18509 18509 0.15932 0 1 8104 11161 4947 4952 10013 10013 0.21696544455403455 FKLRNRLVD 9 Unmodified _FKLRNRLVD_ 0 0 0 L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|9|1|sense L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|9|1|sense L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.8491821289062 2 580.848564 1159.68258 0.40851 0.00023728 -0.01234 -7.1677E-06 0.39617 0.00023012 580.8485139676602 45.212 0.73195 48.729 48.289 49.021 3.5162 74 52 2 0 0 0 0.46869 1 8604 8604 3.9444 0 1 151830 8105 12144 4948 4953 10014 10014 0.10912204762485089 FKLRNRLVD 9 Unmodified _FKLRNRLVD_ 0 0 0 L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|9|1|sense L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|9|1|sense L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.8489990234375 2 580.848564 1159.68258 0.40818 0.00023709 -0.24604 -0.00014291 0.16214 9.4181E-05 580.848323335369 44.994 0.68728 48.632 48.239 48.927 3.6371 64 46 2 0 0 0 0.47197 1 8484 8484 3.5965 0 1 133340 8106 12144 4948 4953 10015 10015 0.10912204762485089 FKMGHQHCHL 10 Unmodified _FKMGHQHCHL_ 0 0 0 REV__L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|75|3|anti-sense REV__L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_1 2 619.28955078125 2 619.289502 1236.56445 NaN NaN NaN NaN NaN NaN NaN 63.066 1 66.426 65.926 66.926 3.3595 0 0 0 0.53105 1 14901 14901 1.4819 0 1 + 8107 27565 4949 4954 10016 10016 -0.0443681408928569 FKMGKGLK 8 Unmodified _FKMGKGLK_ 0 0 0 L1MB2_dup5060|chrX:155113147-155114592:+|1.2476832223946344|0.2415111186234005|2.37|151.0|21|2|sense L1MB2_dup5060|chrX:155113147-155114592:+|1.2476832223946344|0.2415111186234005|2.37|151.0|21|2|sense L1MB2_dup5060|chrX:155113147-155114592:+|1.2476832223946344|0.2415111186234005|2.37|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 454.7732238769531 2 454.772948 907.531344 NaN NaN NaN NaN NaN NaN NaN 28.676 1 32.175 31.675 32.675 3.4986 0 0 0 0.40625 1 4483 4483 2.3027 0 1 8108 10252 4950 4955 10017 10017 0.0738792713030989 FKNCNTHRKG 10 Unmodified _FKNCNTHRKG_ 0 0 0 LTR12__dup181|chr5:76914259-76915020:+|6.2932164790250935|0.0229304655457422|8.1|150.0|17|2|sense;LTR12_dup734|chr19:32699725-32700522:-|1.100945316109665|0.1352207849470877|3.03|151.0|20|2|sense;LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|42|3|sense LTR12__dup181|chr5:76914259-76915020:+|6.2932164790250935|0.0229304655457422|8.1|150.0|17|2|sense LTR12__dup181|chr5:76914259-76915020:+|6.2932164790250935|0.0229304655457422|8.1|150.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 401.87762451171875 3 402.204979 1203.59311 NaN NaN NaN NaN NaN NaN NaN 17.327 1 20.714 20.214 21.214 3.387 0 0 0 0.53105 1 1274 1274 0.56317 0.15491 1 8109 15521 4951 4956 10018 10018 -0.0005437318852727913 FKNFETNTT 9 Unmodified _FKNFETNTT_ 0 0 0 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 MULTI-SECPEP UPN47_class_I_Rep_3 4 550.7716674804688 2 551.264196 1100.51384 0.21307 0.00011746 -0.5503 -0.00030336 -0.33723 -0.0001859 551.263847443944 45.017 0.63188 48.261 47.893 48.525 3.2441 64 41 2 0 0 0 0.11309 1 9457 9457 13.906 13.906 1 123510 8110 16667 4952 4957 10019 10019 -0.03239741661673179 FKNFETNTT 9 Unmodified _FKNFETNTT_ 0 0 0 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 551.264196 1100.51384 0.11483 6.3299E-05 -1.2654 -0.00069759 -1.1506 -0.00063429 551.263539864992 44.507 0.75301 48.202 47.869 48.622 3.6951 -0.055581 -0.00046763 NaN 13.906 69 52 2 NaN NaN NaN NaN 0 NaN NaN 0 155850 8111 16667 4952 4957 -0.03239741661673179 FKNFWKALL 9 Unmodified _FKNFWKALL_ 0 0 0 HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|144|1|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|144|1|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|144|1|anti-sense MSMS UPN47_class_I_Rep_3 4 583.8377075195312 2 583.839677 1165.6648 NaN NaN NaN NaN NaN NaN NaN 63.399 1 66.568 66.068 67.068 3.1698 0 0 0 0.38639 1 15095 15095 3.9444 2.1002 1 8112 8250 4953 4958 10020 10020 0.08859489507653961 FKNLTTGYW 9 Unmodified _FKNLTTGYW_ 0 0 0 L1ME3B_dup6918|chr16:10460316-10461706:+|3.006427593991777|0.3578004603775897|3.07|151.0|50|3|sense L1ME3B_dup6918|chr16:10460316-10461706:+|3.006427593991777|0.3578004603775897|3.07|151.0|50|3|sense L1ME3B_dup6918|chr16:10460316-10461706:+|3.006427593991777|0.3578004603775897|3.07|151.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 565.28759765625 2 565.287474 1128.5604 0.46842 0.00026479 0.19201 0.00010854 0.66043 0.00037333 565.2873656662244 64.409 0.71072 67.917 67.589 68.299 3.5083 136 63 3 0 0 0 0.28552 1 14505 14505 14.838 14.838 1 299590 8113 12732 4954 4959 10021 10021 0.001257429602674165 FKNTSASLPQ 10 Unmodified _FKNTSASLPQ_ 0 0 0 ENST00000521127.1_1_8:67834525-67834591:-|nuORF;ENST00000520944.5_1_8:67834319-67834606:-|nuORF ENST00000521127.1_1_8:67834525-67834591:-|nuORF ENST00000521127.1_1_8:67834525-67834591:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 546.7891235351562 2 546.787838 1091.56112 0.45286 0.00024762 -0.26664 -0.0001458 0.18621 0.00010182 546.7877874598333 43.71 0.73442 47.22 46.878 47.612 3.5103 85 62 3 0 0 0 0.54148 1 8341 8341 6.6304 1.3335 1 168770 8114 7227 4955 4960 10022 10022 0.01900537609321873 FKNTSASLPQ 10 Unmodified _FKNTSASLPQ_ 0 0 0 ENST00000521127.1_1_8:67834525-67834591:-|nuORF;ENST00000520944.5_1_8:67834319-67834606:-|nuORF ENST00000521127.1_1_8:67834525-67834591:-|nuORF ENST00000521127.1_1_8:67834525-67834591:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 546.7882080078125 2 546.787838 1091.56112 0.41364 0.00022617 -0.18856 -0.0001031 0.22508 0.00012307 547.2891766416117 43.469 0.74648 47.231 46.855 47.602 3.7617 107 59 2 0 0 0 0.54148 1 8253 8253 6.6304 1.3335 1 188570 8115 7227 4955 4960 10023 10023 0.01900537609321873 FKNTSASLPQ 10 Unmodified _FKNTSASLPQ_ 0 0 0 ENST00000521127.1_1_8:67834525-67834591:-|nuORF;ENST00000520944.5_1_8:67834319-67834606:-|nuORF ENST00000521127.1_1_8:67834525-67834591:-|nuORF ENST00000521127.1_1_8:67834525-67834591:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 546.7876586914062 2 546.787838 1091.56112 0.37841 0.00020691 -0.13842 -7.5688E-05 0.23998 0.00013122 546.7877550157667 43.543 0.79721 47.182 46.889 47.686 3.6385 92 56 2 0 0 0 0.51508 2 8203 8203;8243 10.151 2.5416 1 172580 8116 7227 4955 4960 10024;10025 10024 0.01900537609321873 FKPFFFYY 8 Unmodified _FKPFFFYY_ 0 0 0 L1ME3A_dup10509|chr11:68498493-68499136:-|2.2180417851175296|0.0231558075534266|6.58|151.0|38|2|anti-sense L1ME3A_dup10509|chr11:68498493-68499136:-|2.2180417851175296|0.0231558075534266|6.58|151.0|38|2|anti-sense L1ME3A_dup10509|chr11:68498493-68499136:-|2.2180417851175296|0.0231558075534266|6.58|151.0|38|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 579.2551879882812 2 579.786579 1157.5586 0.035888 2.0807E-05 0.98051 0.00056849 1.0164 0.0005893 579.7874006653983 43.179 0.54996 46.866 46.56 47.11 3.6875 47 36 2 0 0 0 0.72333 1 8843 8843 14.582 0 1 95221 8117 12618 4956 4961 10026 10026 -0.013872660576680573 FKPHRKRS 8 Unmodified _FKPHRKRS_ 0 0 0 Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|77|2|sense Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|77|2|sense Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|77|2|sense MSMS UPN47_class_I_Rep_1 2 528.314453125 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.686 1 93.36 92.86 93.86 3.6738 0 0 0 0.40625 1 22427 22427 2.3027 0.24298 1 8118 7971 4957 4962 10027 10027 0.08970799622375125 FKQQYERE 8 Unmodified _FKQQYERE_ 0 0 0 nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA MSMS UPN48_class_I_Rep_2 6 564.2786865234375 2 564.277638 1126.54072 NaN NaN NaN NaN NaN NaN NaN 23.887 1 27.527 27.027 28.027 3.6397 0 0 0 0.40746 1 2681 2681 0.69038 0 1 8119 3324 4958 4963 10028 10028 -0.017486330504880243 FKQRPDLS 8 Unmodified _FKQRPDLS_ 0 0 0 REV__MER61-int_dup75|chr1:176097888-176099505:+|1.2936134995205475|0.013333398010372|6.6|151.0|126|3|anti-sense REV__MER61-int_dup75|chr1:176097888-176099505:+|1.2936134995205475|0.013333398010372|6.6|151.0|126|3|anti-sense MSMS UPN48_class_I_Rep_2 6 495.77166748046875 2 495.771991 989.529429 NaN NaN NaN NaN NaN NaN NaN 42.089 1 45.846 45.346 46.346 3.7579 0 0 0 0.40472 1 7752 7752 4.3292 0.73274 1 + 8120 31509 4959 4964 10029 10029 0.03424589646044751 FKQVTKWL 8 Unmodified _FKQVTKWL_ 0 0 0 REV__L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|8|1|sense REV__L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 525.309814453125 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 98.561 1 102.17 101.67 102.67 3.6065 0 0 0 0.40472 1 23786 23786 4.3292 0.73274 1 + 8121 25269 4960 4965 10030 10030 0.08459227582216045 FKRGKLISM 9 Unmodified _FKRGKLISM_ 0 0 0 REV__ENSG00000121377|ENST00000240687|TAS2R7 REV__ENSG00000121377|ENST00000240687|TAS2R7 MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.323337 1078.63212 NaN NaN NaN NaN NaN NaN NaN 25.71 1 25.71 25.21 26.21 0 0 0 0 0.38639 1 3568 3568 3.9444 0.3479 1 + 8122 18726 4961 4966 10031 10031 0.09594959113132973 FKRKKKFALI 10 Unmodified _FKRKKKFALI_ 0 0 0 REV__L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|113|2|anti-sense REV__L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|113|2|anti-sense MSMS UPN48_class_I_Rep_2 6 640.293212890625 2 639.924075 1277.8336 NaN NaN NaN NaN NaN NaN NaN 85.474 1 89.18 88.68 89.68 3.7058 0 0 0 0.53105 1 20327 20327 0 0 1 + 8123 29609 4962 4967 10032 10032 0.20579391141200176 FKRLYLYFLFN 11 Unmodified _FKRLYLYFLFN_ 0 0 0 L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|71|1|anti-sense L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|71|1|anti-sense L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|71|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 508.2114562988281 3 508.618495 1522.83366 0.18268 9.2913E-05 1.0477 0.00053289 1.2304 0.00062581 508.6190666858047 36.766 0.13491 40.429 40.359 40.494 3.663 18 14 2 0 0 0 22.551 1 6130 6130 0.45452 0.35968 1 41880 8124 11730 4963 4968 10033 10033 0.0931534635051321 FKRMWILL 8 Unmodified _FKRMWILL_ 0 0 0 L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense MSMS UPN46_class_I_Rep_3 1 553.8296508789062 2 553.830798 1105.64704 NaN NaN NaN NaN NaN NaN NaN 97.148 1 97.148 96.648 97.648 0 0 0 0 0.40746 1 23632 23632 0.69038 0 1 8125 11861 4964 4969 10034 10034 0.09844450981154296 FKRMWILL 8 Unmodified _FKRMWILL_ 0 0 0 L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.8300170898438 2 553.830798 1105.64704 0.5214 0.00028877 -1.2393 -0.00068636 -0.7179 -0.0003976 553.8299231114538 79.461 0.36101 82.996 82.926 83.287 3.5352 50 38 2 0 0 0 0.82752 1 19012 19012 0.79363 0.10326 1 91743 8126 11861 4964 4969 10035 10035 0.09844450981154296 FKRMWILL 8 Unmodified _FKRMWILL_ 0 0 0 L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 553.830798 1105.64704 0.4052 0.00022441 -1.9797 -0.0010964 -1.5745 -0.00087203 553.8295489574841 83.112 0.075462 83.112 83.055 83.13 0 0.057633 -0.00053836 NaN 0.79363 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 92421 8127 11861 4964 4969 0.09844450981154296 FKRQIMLLA 9 Unmodified _FKRQIMLLA_ 0 0 0 REV__Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|29|2|sense REV__Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 560.6702880859375 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 99.219 1 102.83 102.33 103.33 3.6065 0 0 0 0.39428 1 23955 23955 2.0598 0.40713 1 + 8128 32510 4965 4970 10036 10036 0.1088353214727249 FKRYTKLTGE 10 Unmodified _FKRYTKLTGE_ 0 0 0 REV__L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|42|3|sense REV__L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|42|3|sense MSMS UPN48_class_I_Rep_1 5 414.90802001953125 3 414.89955 1241.67682 NaN NaN NaN NaN NaN NaN NaN 29.825 1 33.375 32.875 33.875 3.5499 0 0 0 0.53105 1 4203 4203 7.9454 1.711 1 + 8129 27703 4966 4971 10037 10037 0.065650614601509 FKSISIYKHC 10 Unmodified _FKSISIYKHC_ 0 0 0 REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 613.3251342773438 2 613.323534 1224.63251 0.50823 0.00031171 1.4319 0.00087823 1.9401 0.0011899 613.3242407962504 66.875 0.37479 70.371 70.2 70.574 3.4964 30 20 2 0 0 0 0.51963 1 15317 15317 9.544 0.16085 1 147130 + 8130 28209 4967 4972 10038 10038 0.029183340423514892 FKSISIYKHC 10 Unmodified _FKSISIYKHC_ 0 0 0 REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 613.82568359375 2 613.323534 1224.63251 0.6153 0.00037738 0.91235 0.00055957 1.5276 0.00093694 613.3238663007568 66.843 0.38104 70.351 70.136 70.517 3.5077 32 21 2 0 0 0 0.38794 1 15212 15212 20.581 0.95498 1 132100 + 8131 28209 4967 4972 10039 10039 0.029183340423514892 FKSISIYKHC 10 Unmodified _FKSISIYKHC_ 0 0 0 REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 613.323534 1224.63251 0.50823 0.00031171 1.4319 0.00087823 1.9401 0.0011899 613.3242407962504 66.875 0.37479 70.371 70.2 70.574 3.4964 0.01013 0.00039214 NaN 20.581 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 147130 + 8132 28209 4967 4972 0.029183340423514892 FKSISIYKHC 10 Unmodified _FKSISIYKHC_ 0 0 0 REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense REV__L1ME4a_dup10912|chr5:77441741-77442407:+|1.0319174586842903|0.4935650801526144|1.06|151.0|44|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 613.323534 1224.63251 0.6153 0.00037738 0.91235 0.00055957 1.5276 0.00093694 613.3238663007568 66.843 0.38104 70.351 70.136 70.517 3.5077 -0.01013 -0.00024518 NaN 20.581 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 132100 + 8133 28209 4967 4972 0.029183340423514892 FKSRPIYG 8 Unmodified _FKSRPIYG_ 0 0 0 REV__L1MB3_dup303|chr1:35968258-35969146:-|4.256489046974848|0.1285856303310902|5.05|151.0|43|2|anti-sense REV__L1MB3_dup303|chr1:35968258-35969146:-|4.256489046974848|0.1285856303310902|5.05|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2720947265625 2 484.271627 966.528701 NaN NaN NaN NaN NaN NaN NaN 69.394 1 72.907 72.407 73.407 3.5128 0 0 0 0.40738 1 15983 15983 0.79363 0 1 + 8134 25872 4968 4973 10040 10040 0.044097949970023365 FKTLLVFIRFW 11 Unmodified _FKTLLVFIRFW_ 0 0 0 REV__HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|106|3|sense REV__HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|106|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 490.6270751953125 3 490.627102 1468.85948 0.24121 0.00011834 0.3959 0.00019424 0.63711 0.00031258 490.6272102574716 103.09 0.13405 106.83 106.73 106.87 3.7434 26 18 2 0 0 0 0.68024 1 24346 24346 0.50596 0 1 247100 + 8135 23692 4969 4974 10041 10041 0.14380240592777227 FKTLTVLVFG 10 Unmodified _FKTLTVLVFG_ 0 0 0 Ricksha_c_dup285|chr4:83079845-83081155:+|1.870141830402009|0.0296312264032745|5.98|151.0|64|2|anti-sense Ricksha_c_dup285|chr4:83079845-83081155:+|1.870141830402009|0.0296312264032745|5.98|151.0|64|2|anti-sense Ricksha_c_dup285|chr4:83079845-83081155:+|1.870141830402009|0.0296312264032745|5.98|151.0|64|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 562.3346557617188 2 562.839342 1123.66413 0.18988 0.00010687 -4.3609 -0.0024545 -4.1711 -0.0023476 562.8364691107736 30.198 0.02808 30.198 30.182 30.21 0 4 2 2 0 0 0 0.84575 1 4886 4886 3.2813 1.6287 1 47936 8136 32833 4970 4975 10042 10042 0.10724650067936636 FKVELFKLMR 10 Unmodified _FKVELFKLMR_ 0 0 0 REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.5914001464844 3 437.593293 1309.75805 NaN NaN NaN NaN NaN NaN NaN 90.422 1 94.048 93.548 94.548 3.626 0 0 0 0.53105 1 21730 21730 1.7423 0.54893 1 + 8137 22413 4971 4976 10043 10043 0.11556045898555567 FKVHFGFFPR 10 Unmodified _FKVHFGFFPR_ 0 0 0 REV__L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|203|1|anti-sense REV__L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|203|1|anti-sense MSMS UPN47_class_I_Rep_3 4 641.0150756835938 2 641.3482 1280.68185 NaN NaN NaN NaN NaN NaN NaN 45.629 1 48.873 48.373 49.373 3.2441 0 0 0 0.53105 1 9686 9686 1.4819 0 1 + 8138 29569 4972 4977 10044 10044 0.05273410113454702 FKVLFCLVR 9 Unmodified _FKVLFCLVR_ 0 0 0 L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|116|3|anti-sense L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|116|3|anti-sense L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|116|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 562.3347778320312 2 562.83608 1123.65761 0.17779 0.00010007 0.38043 0.00021412 0.55822 0.00031419 562.8363043451186 29.72 0.28028 29.72 29.521 29.801 0 31 21 2 0 0 0 0.12462 1 4757 4757 1.8442 0.19162 1 492780 8139 15378 4973 4978 10045 10045 0.10072433635559719 FKVLPGDY 8 Unmodified _FKVLPGDY_ 0 0 0 ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|2|intron;ENSG00000103226.19,NOMO3,chr16,+,I31.1,16280331,16281238|81|7.02|2|intron;ENSG00000103226.19,NOMO3,chr16,+,I28.1,16275444,16277369|24|5.27|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|34|6.56|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|32|8.62|2|intron;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2 ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|2|intron ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|2|intron MSMS UPN46_class_I_Rep_3 1 469.75341796875 2 469.752736 937.490919 NaN NaN NaN NaN NaN NaN NaN 87.943 1 87.943 87.443 88.443 0 0 0 0 0.40604 1 21095 21095 2.5775 0 1 8140 1650 4974 4979 10046 10046 0.019672840115276813 FKVPVQAQL 9 Unmodified _FKVPVQAQL_ 0 0 0 REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|481|3|anti-sense REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|481|3|anti-sense MSMS UPN48_class_I_Rep_3 7 515.306640625 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 87.471 1 91.262 90.762 91.762 3.7905 0 0 0 0.39518 1 20756 20756 1.8442 0.19162 1 + 8141 30603 4975 4980 10047 10047 0.08870923719609891 FKVVIWMFF 9 Unmodified _FKVVIWMFF_ 0 0 0 REV__L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|66|1|anti-sense REV__L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|66|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 406.86602783203125 3 406.224429 1215.65146 0.095086 3.8626E-05 1.9019 0.00077259 1.997 0.00081122 406.22522600830825 60.961 0.15559 64.474 64.372 64.528 3.5129 23 14 2 0 0 0 0.12516 1 13415 13415 1.0715 0 1 62294 + 8142 24080 4976 4981 10048 10048 0.052259154040484646 FKVYKAVTF 9 Unmodified _FKVYKAVTF_ 0 0 0 L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|46|1|anti-sense L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|46|1|anti-sense L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|46|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 552.2799072265625 2 551.81841 1101.62227 0.58421 0.00032238 -0.9734 -0.00053714 -0.38919 -0.00021476 551.816526585999 54.186 0.12722 57.768 57.687 57.815 3.5817 6 4 2 0 0 0 0.11425 1 11435 11435 12.532 1.7076 1 37576 8143 10696 4977 4982 10049 10049 0.07552094379411756 FKWCRNNL 8 Unmodified _FKWCRNNL_ 0 0 0 L1MB7_dup21214|chr19:15393036-15393639:+|1.6861154025630356|0.2227202813868924|2.92|151.0|1|1|sense L1MB7_dup21214|chr19:15393036-15393639:+|1.6861154025630356|0.2227202813868924|2.92|151.0|1|1|sense L1MB7_dup21214|chr19:15393036-15393639:+|1.6861154025630356|0.2227202813868924|2.92|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.7734985351562 2 540.774011 1079.53347 0.45221 0.00024455 -1.2504 -0.00067618 -0.79818 -0.00043164 540.7732087467247 82.257 0.16761 85.769 85.644 85.812 3.5122 29 20 2 0 0 0 0.82752 1 20528 20528 12.532 2.4576 1 75367 8144 10792 4978 4983 10050 10050 -0.0031164413189799234 FKWKFLLRT 9 Unmodified _FKWKFLLRT_ 0 0 0 L1MB4_dup3119|chr6:136659540-136659891:+|1.2880674573392576|0.1076286710602166|3.58|151.0|13|3|sense L1MB4_dup3119|chr6:136659540-136659891:+|1.2880674573392576|0.1076286710602166|3.58|151.0|13|3|sense L1MB4_dup3119|chr6:136659540-136659891:+|1.2880674573392576|0.1076286710602166|3.58|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 619.8734741210938 2 619.874051 1237.73355 NaN NaN NaN NaN NaN NaN NaN 92.971 1 96.376 95.876 96.876 3.4052 0 0 0 0.4007 1 23196 23196 0.52476 0 1 8145 10498 4979 4984 10051 10051 0.12419153807354633 FKWKRIHK 8 Unmodified _FKWKRIHK_ 0 0 0 L1MCa_dup4584|chrX:136700546-136701696:+|2.0379620043249984|0.0128594848726022|7.31|151.0|30|3|sense L1MCa_dup4584|chrX:136700546-136701696:+|2.0379620043249984|0.0128594848726022|7.31|151.0|30|3|sense L1MCa_dup4584|chrX:136700546-136701696:+|2.0379620043249984|0.0128594848726022|7.31|151.0|30|3|sense MSMS UPN48_class_I_Rep_3 7 571.8508911132812 2 571.85091 1141.68727 NaN NaN NaN NaN NaN NaN NaN 72.452 1 75.978 75.478 76.478 3.5266 0 0 0 0.40746 1 16888 16888 0.69038 0 1 8146 11812 4980 4985 10052 10052 0.12209133695910168 FKWTYVFV 8 Unmodified _FKWTYVFV_ 0 0 0 L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|125|3|anti-sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|125|3|anti-sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|125|3|anti-sense MSMS UPN47_class_I_Rep_3 4 545.2927856445312 2 545.292028 1088.5695 NaN NaN NaN NaN NaN NaN NaN 26.82 1 30.162 29.662 30.662 3.3422 0 0 0 0.40738 1 3982 3982 0.79363 0.10326 1 8147 12457 4981 4986 10053 10053 0.028761363166267984 FKWVRRWLPK 10 Unmodified _FKWVRRWLPK_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|74|2|sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|74|2|sense MSMS UPN48_class_I_Rep_2 6 472.61810302734375 3 472.618941 1414.83499 NaN NaN NaN NaN NaN NaN NaN 93.629 1 97.399 96.899 97.899 3.77 0 0 0 0.53105 1 22263 22263 0.77653 0.27058 1 + 8148 25071 4982 4987 10054 10054 0.14417025229931824 FKWWTEPEH 9 Unmodified _FKWWTEPEH_ 0 0 0 REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 MSMS UPN47_class_I_Rep_2 3 630.2943115234375 2 630.29583 1258.57711 NaN NaN NaN NaN NaN NaN NaN 31.948 1 35.417 34.917 35.917 3.4691 0 0 0 0.4007 1 5474 5474 0.52476 0 1 + 8149 32116 4983 4988 10055 10055 -0.04183756153770446 FKYLFPLPN 9 Unmodified _FKYLFPLPN_ 0 0 0 REV__L1M5_dup1613|chr1:92251073-92251690:+|1.8413485253443795|0.3942648036471511|2.22|151.0|42|2|anti-sense REV__L1M5_dup1613|chr1:92251073-92251690:+|1.8413485253443795|0.3942648036471511|2.22|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_2 3 569.8186645507812 2 569.81841 1137.62227 NaN NaN NaN NaN NaN NaN NaN 54.68 1 57.998 57.498 58.498 3.3187 0 0 0 0.39518 1 12381 12381 1.8442 0.19162 1 + 8150 24620 4984 4989 10056 10056 0.058960943794318155 FKYMAPTPPS 10 Unmodified _FKYMAPTPPS_ 0 0 0 REV__ENSG00000099904|ENST00000334554|ZDHHC8 REV__ENSG00000099904|ENST00000334554|ZDHHC8 MSMS UPN46_class_I_Rep_3 1 569.7841186523438 2 569.78371 1137.55287 NaN NaN NaN NaN NaN NaN NaN 112.02 1 112.02 111.52 112.52 0 0 0 0 0.53105 1 27643 27643 1.4819 0 1 + 8151 18074 4985 4990 10057 10057 -0.010407326316681065 FKYNDISRLK 10 Unmodified _FKYNDISRLK_ 0 0 0 L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|1|1|sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|1|1|sense L1MEf_dup10571|chr17:58294124-58294483:+|1.4943446333280963|1e-05|17.19|145.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 642.3616943359375 2 642.358962 1282.70337 NaN NaN NaN NaN NaN NaN NaN 106.39 1 110.08 109.58 110.58 3.6834 0 0 0 0.53105 1 25152 25152 3.2813 1.6287 1 8152 13230 4986 4991 10058 10058 0.07332750351497452 FLAADISRSL 10 Unmodified _FLAADISRSL_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-MSMS UPN47_class_I_Rep_1 2 546.8058471679688 2 546.806031 1091.59751 0.1866 0.00010203 0.22601 0.00012359 0.41261 0.00022562 546.8061523921064 46.7 0.081413 50.4 50.343 50.425 3.6999 7 5 2 0 0 0 0.56333 1 9924 9924 1.4819 0.28856 1 39982 + 8153 20001 4987 4992 10059 10059 0.05537414506034111 FLADIVQKL 9 Unmodified _FLADIVQKL_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS UPN47_class_I_Rep_1 2 523.8154907226562 2 523.815867 1045.61718 0.27705 0.00014512 -0.24037 -0.00012591 0.036682 1.9215E-05 523.8156916628291 68.902 0.62015 72.27 71.911 72.531 3.3678 94 46 3 0 0 0 0.053261 3 16675 16616;16675;16696 47.594 19.966 1 172630 8154 3605 4988 4993 10060;10061;10062 10061 0.0961979051680828 FLADIVQKL 9 Unmodified _FLADIVQKL_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS UPN47_class_I_Rep_2 3 524.3076171875 2 523.815867 1045.61718 -0.0025249 -1.3226E-06 -0.20379 -0.00010675 -0.20631 -0.00010807 523.815818079312 69.062 0.5071 72.338 72.115 72.622 3.2761 67 40 2 0 0 0 0.066364 3 16821 16763;16784;16821 41.956 10.687 1 178760 8155 3605 4988 4993 10063;10064;10065 10065 0.0961979051680828 FLADPSAFVAA 11 Unmodified _FLADPSAFVAA_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS UPN46_class_I_Rep_3 1 554.787353515625 2 554.787307 1107.56006 0.39952 0.00022165 0.074687 4.1435E-05 0.47421 0.00026309 554.7872577770199 79.891 0.2752 79.891 79.778 80.053 0 30 26 2 0 0 0 0.59712 1 18828 18828 5.2969 2.3016 1 83646 8156 1331 4989 4994 10066 10066 0.010583232404542287 FLAFRCGESS 10 Unmodified _FLAFRCGESS_ 0 0 0 MER66-int_dup63|chr1:145183214-145183569:+|1.1117909342076813|0.1078487055309611|3.37|150.0|2|1|sense MER66-int_dup63|chr1:145183214-145183569:+|1.1117909342076813|0.1078487055309611|3.37|150.0|2|1|sense MER66-int_dup63|chr1:145183214-145183569:+|1.1117909342076813|0.1078487055309611|3.37|150.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 558.7614135742188 2 558.760766 1115.50698 NaN NaN NaN NaN NaN NaN NaN 68.587 1 71.785 71.285 72.285 3.1977 0 0 0 0.53105 1 16676 16676 1.6526 0 1 8157 16181 4990 4995 10067 10067 -0.04615377813865962 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN46_class_I_Rep_3 1 487.8055419921875 2 487.805303 973.596052 NaN NaN NaN NaN NaN NaN NaN 64.299 1 64.299 63.799 64.799 0 0 0 0 0.13551 1 14464 14464 20.454 8.8133 1 8158 3728 4991 4996 10068 10068 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_1 2 487.8050537109375 2 487.805303 973.596052 0.11527 5.623E-05 -0.2141 -0.00010444 -0.098828 -4.8209E-05 487.8049671748907 55.971 0.94461 59.45 59.14 60.085 3.4785 100 52 3 0 0 0 0.0081951 6 12781 12687;12728;12781;12822;12872;12916 71.134 44.25 1 329950 8159 3728 4991 4996 10069;10070;10071;10072;10073;10074 10071 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_2 3 487.8052062988281 2 487.805303 973.596052 0.33466 0.00016325 -0.41478 -0.00020233 -0.080114 -3.908E-05 487.8049511968624 56.368 0.94999 59.669 59.223 60.173 3.3009 115 63 3 0 0 0 0.0077059 8 12892 12805;12810;12853;12892;12937;12981;12995;13026 96.285 58.311 1 436150 8160 3728 4991 4996 10075;10076;10077;10078;10079;10080;10081;10082 10078 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_3 4 487.80487060546875 2 487.805303 973.596052 0.12031 5.8687E-05 -0.27892 -0.00013606 -0.15861 -7.737E-05 487.8048432964098 56.458 0.72038 59.631 59.308 60.028 3.1721 81 44 3 0 0 0 0.0146 2 12972 12915;12972 103.75 57.727 1 180250 8161 3728 4991 4996 10083;10084 10084 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_3 4 487.8056335449219 2 487.805303 973.596052 0.10395 5.0707E-05 0.29173 0.00014231 0.39568 0.00019302 487.80526411341157 56.941 0.075603 60.113 60.089 60.164 3.1721 13 9 2 0 0 0 0.10817 1 13136 13136 32.305 13.049 1 106070 8162 3728 4991 4996 10085 10085 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN47_class_I_Rep_3 4 487.8050537109375 2 487.805303 973.596052 NaN NaN NaN NaN NaN NaN NaN 56.608 1 59.781 59.281 60.281 3.1721 0 0 0 0.029163 1 13025 13025 46.021 22.873 1 8163 3728 4991 4996 10086 10086 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN47_class_I_Rep_3 4 487.80517578125 2 487.805303 973.596052 NaN NaN NaN NaN NaN NaN NaN 56.668 1 59.841 59.341 60.341 3.1721 0 0 0 3.8198E-12 1 13044 13044 85.272 54.635 1 8164 3728 4991 4996 10087 10087 0.10819825207954636 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN47_class_I_Rep_3 4 487.80474853515625 2 487.805303 973.596052 NaN NaN NaN NaN NaN NaN NaN 56.795 1 59.967 59.467 60.467 3.1721 0 0 0 0.041661 1 13083 13083 39.957 16.809 1 8165 3728 4991 4996 10088 10088 0.10819825207954636 FLAKYAKC 8 Unmodified _FLAKYAKC_ 0 0 0 ENST00000584871.5_1_17:80015993-80017016:-|nuORF ENST00000584871.5_1_17:80015993-80017016:-|nuORF ENST00000584871.5_1_17:80015993-80017016:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 472.2755432128906 2 472.257131 942.499709 0.19148 9.0427E-05 0.99357 0.00046922 1.1851 0.00055965 472.25795163628914 49.961 0.049835 49.961 49.939 49.989 0 6 4 2 0 0 0 0.72333 1 10527 10527 10.183 3.8293 1 74037 8166 7574 4992 4997 10089 10089 0.02615934376342466 FLAPSHALS 9 Unmodified _FLAPSHALS_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|425|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|425|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|425|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.75579833984375 2 471.75581 941.497067 0.13927 6.5704E-05 -0.1628 -7.6801E-05 -0.023524 -1.1097E-05 471.75566100230026 43.223 1.0813 46.984 46.614 47.695 3.7617 182 83 3 0 0 0 0.11897 1 8139 8139 30.225 0 1 873250 8167 8037 4993 4998 10090 10090 0.023978022430469537 FLAPWAKR 8 Unmodified _FLAPWAKR_ 0 0 0 MLT1J_dup12974|chr16:81477621-81478106:-|1.1187940407155723|0.0315276716050456|5.15|150.0|21|2|anti-sense MLT1J_dup12974|chr16:81477621-81478106:-|1.1187940407155723|0.0315276716050456|5.15|150.0|21|2|anti-sense MLT1J_dup12974|chr16:81477621-81478106:-|1.1187940407155723|0.0315276716050456|5.15|150.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 494.79071044921875 2 494.789987 987.565421 NaN NaN NaN NaN NaN NaN NaN 66.111 1 69.469 68.969 69.969 3.3576 0 0 0 0.40738 1 15815 15815 0.79363 0 1 8168 16457 4994 4999 10091 10091 0.071140916135505 FLARALPGAFP 11 Unmodified _FLARALPGAFP_ 0 0 0 nc|ENSG00000120686|P61960-2|UFM1 nc|ENSG00000120686|P61960-2|UFM1 nc|ENSG00000120686|P61960-2|UFM1 MULTI-MSMS UPN48_class_I_Rep_2 6 580.8544921875 2 580.334759 1158.65496 0.55671 0.00032308 -0.12898 -7.4853E-05 0.42773 0.00024823 580.3345895145075 59.747 1.0155 63.234 62.805 63.821 3.4868 247 80 4 0 0 0 0.65271 1 13315 13315 2.9952 2.9952 1 1630800 8169 16672 4995 5000 10092 10092 0.08198301502261529 FLAVRSSY 8 Unmodified _FLAVRSSY_ 0 0 0 ENST00000296328.8_1_3:196089371-196089518:-|nuORF ENST00000296328.8_1_3:196089371-196089518:-|nuORF ENST00000296328.8_1_3:196089371-196089518:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 471.7565002441406 2 471.75581 941.497067 0.19965 9.4188E-05 -0.1112 -5.246E-05 0.088452 4.1728E-05 471.75565038158027 48.08 0.92013 48.08 47.763 48.683 0 237 96 3 0 0 0 0.82752 3 9926 9926;9960;10069 36.044 12.532 1 1890000 8170 6060 4996 5001 10093;10094;10095 10093 0.023978022430469537 FLAWLCILT 9 Unmodified _FLAWLCILT_ 0 0 0 MER68B_dup355|chr13:50975395-50975948:+|1.2971277543585338|0.0114450711720737|6.82|151.0|10|2|sense MER68B_dup355|chr13:50975395-50975948:+|1.2971277543585338|0.0114450711720737|6.82|151.0|10|2|sense MER68B_dup355|chr13:50975395-50975948:+|1.2971277543585338|0.0114450711720737|6.82|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 540.2991333007812 2 540.301539 1078.58852 NaN NaN NaN NaN NaN NaN NaN 64.799 1 64.799 64.299 65.299 0 0 0 0 0.26661 1 14611 14611 12.532 0 1 8171 16198 4997 5002 10096 10096 0.05237349616004394 FLCAWQINT 9 Unmodified _FLCAWQINT_ 0 0 0 ENST00000360315.7_1_19:19617931-19618153:+|nuORF ENST00000360315.7_1_19:19617931-19618153:+|nuORF ENST00000360315.7_1_19:19617931-19618153:+|nuORF MSMS UPN48_class_I_Rep_3 7 548.270263671875 2 548.268227 1094.5219 NaN NaN NaN NaN NaN NaN NaN 50.165 1 53.786 53.286 54.286 3.621 0 0 0 0.31276 1 10148 10148 10.074 0.6908 1 8172 6316 4998 5003 10097 10097 -0.02157885945871385 FLCCNCYTY 9 Unmodified _FLCCNCYTY_ 0 0 0 L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|169|2|anti-sense L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|169|2|anti-sense L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|169|2|anti-sense MSMS UPN46_class_I_Rep_3 1 565.2097778320312 2 565.211206 1128.40786 NaN NaN NaN NaN NaN NaN NaN 62.073 1 62.073 61.573 62.573 0 0 0 0 0.38299 1 13860 13860 4.756 2.4533 1 8173 11013 4999 5004 10098 10098 -0.15120860094634736 FLCIKMGF 8 Unmodified _FLCIKMGF_ 0 0 0 ENST00000518547.5_2_8:125740417-125740621:-|nuORF ENST00000518547.5_2_8:125740417-125740621:-|nuORF ENST00000518547.5_2_8:125740417-125740621:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 479.7480163574219 2 479.748085 957.481616 -0.24001 -0.00011514 -0.60735 -0.00029138 -0.84736 -0.00040652 479.74766173851975 42.124 0.72499 45.804 45.491 46.216 3.6792 108 47 3 0 0 0 0.82752 1 8619 8619 19.439 0 1 182450 8174 7216 5000 5005 10099 10099 0.0011747612999215562 FLCMVREK 8 Unmodified _FLCMVREK_ 0 0 0 L1MA4_dup9008|chr17:3022455-3023037:-|1.347375522514209|0.0318745906089375|5.4|151.0|38|3|anti-sense L1MA4_dup9008|chr17:3022455-3023037:-|1.347375522514209|0.0318745906089375|5.4|151.0|38|3|anti-sense L1MA4_dup9008|chr17:3022455-3023037:-|1.347375522514209|0.0318745906089375|5.4|151.0|38|3|anti-sense MSMS UPN47_class_I_Rep_1 2 513.268798828125 2 513.267173 1024.51979 NaN NaN NaN NaN NaN NaN NaN 80.664 1 84.151 83.651 84.651 3.4874 0 0 0 0.40581 1 20101 20101 2.8892 0.58649 1 8175 9742 5001 5006 10100 10100 0.008513620446365167 FLCPFLNEGLV 11 Unmodified _FLCPFLNEGLV_ 0 0 0 REV__MLT1D_dup18034|chr17:37526480-37526931:-|1.2226456090866245|0.1077147651784087|3.5|151.0|29|3|anti-sense REV__MLT1D_dup18034|chr17:37526480-37526931:-|1.2226456090866245|0.1077147651784087|3.5|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 626.323486328125 2 626.325742 1250.63693 NaN NaN NaN NaN NaN NaN NaN 57.73 1 61.244 60.744 61.744 3.5142 0 0 0 0.38417 1 12510 12510 4.1895 0.59301 1 + 8176 31671 5002 5007 10101 10101 0.02163798465221589 FLCRRMKLDP 10 Unmodified _FLCRRMKLDP_ 0 0 0 L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|98|3|sense L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|98|3|sense L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|98|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 639.843505859375 2 639.84411 1277.67367 0.74544 0.00047696 -0.81211 -0.00051963 -0.066678 -4.2663E-05 639.8432761768244 96.423 0.11812 96.423 96.392 96.51 0 31 14 3 0 0 0 0.54822 1 23448 23448 5.7319 0 1 438040 8177 9464 5003 5008 10102 10102 0.04593771810164071 FLCRRMKLDP 10 Unmodified _FLCRRMKLDP_ 0 0 0 L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|98|3|sense L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|98|3|sense L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|98|3|sense MSMS UPN46_class_I_Rep_3 1 639.8433837890625 2 639.84411 1277.67367 NaN NaN NaN NaN NaN NaN NaN 95.084 1 95.084 94.584 95.584 0 0 0 0 0.53105 1 23073 23073 2.9952 0 1 8178 9464 5003 5008 10103 10103 0.04593771810164071 FLCSQLDDSL 10 Unmodified _FLCSQLDDSL_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|92|3|anti-sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|92|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.7653198242188 2 570.765714 1139.51688 0.26208 0.00014959 -0.13831 -7.894E-05 0.12378 7.0647E-05 570.765416269097 51.47 0.70883 55.063 54.806 55.515 3.5932 85 35 3 0 0 0 0.36464 1 11433 11433 22.736 2.2827 1 300810 + 8179 27253 5004 5009 10104 10104 -0.04730234599173855 FLCSQLDDSL 10 Unmodified _FLCSQLDDSL_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|92|3|anti-sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|92|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.7654418945312 2 570.765714 1139.51688 0.52524 0.00029979 -0.76886 -0.00043884 -0.24361 -0.00013905 570.765040634106 52.002 0.67614 55.208 54.895 55.571 3.2055 103 39 4 0 0 0 0.30128 1 11676 11676 32.786 7.3864 1 358410 + 8180 27253 5004 5009 10105 10105 -0.04730234599173855 FLDASGAKLDY 11 Unmodified _FLDASGAKLDY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS UPN47_class_I_Rep_1 2 600.3009643554688 2 600.300778 1198.587 0.34493 0.00020706 0.075936 4.5585E-05 0.42087 0.00025265 600.3006759029132 54.157 1.0613 57.658 57.313 58.374 3.5014 144 58 4 0 0 0 5.6014E-05 4 12221 12134;12180;12221;12267 99.864 58.024 1 569270 8181 1221 5005 5010 10106;10107;10108;10109 10108 -0.004346129390341957 FLDASGAKLDY 11 Unmodified _FLDASGAKLDY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS UPN47_class_I_Rep_2 3 600.3009643554688 2 600.300778 1198.587 0.5172 0.00031048 -0.10588 -6.3558E-05 0.41133 0.00024692 600.3006231476659 54.389 1.085 57.707 57.355 58.44 3.3187 127 56 3 0 0 0 1.7149E-09 8 12321 12235;12277;12321;12364;12406;12452;12460;12509 112.95 74.331 1 712220 8182 1221 5005 5010 10110;10111;10112;10113;10114;10115;10116;10117 10112 -0.004346129390341957 FLDASGAKLDY 11 Unmodified _FLDASGAKLDY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS UPN47_class_I_Rep_3 4 600.3008422851562 2 600.300778 1198.587 0.45412 0.00027261 -0.10106 -6.0669E-05 0.35306 0.00021194 600.3005985483276 54.591 0.9594 57.777 57.393 58.353 3.1856 156 58 4 0 0 0 1.6883E-14 7 12414 12329;12372;12414;12452;12490;12537;12546 119.6 79.363 1 587180 8183 1221 5005 5010 10118;10119;10120;10121;10122;10123;10124 10120 -0.004346129390341957 FLDDFESKY 9 Unmodified _FLDDFESKY_ 0 0 0 nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475.14,WIPF2,chr17,+,I5.1,40260839,40262524|30|5.1|2|intron;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF nc|ENSG00000171475|Q8TF74-2|WIPF2 nc|ENSG00000171475|Q8TF74-2|WIPF2 MULTI-MSMS UPN47_class_I_Rep_1 2 582.2664184570312 2 582.266404 1162.51826 0.36145 0.00021046 0.11583 6.7444E-05 0.47728 0.0002779 582.266332496856 56.733 1.1134 60.19 59.812 60.925 3.4572 206 93 3 0 0 0 0.006587 7 12941 12941;12979;13019;13059;13101;13105;13186 103.82 56.075 1 658810 8184 4520 5006 5011 10125;10126;10127;10128;10129;10130;10131 10125 -0.05650277238760282 FLDDFESKY 9 Unmodified _FLDDFESKY_ 0 0 0 nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475.14,WIPF2,chr17,+,I5.1,40260839,40262524|30|5.1|2|intron;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF nc|ENSG00000171475|Q8TF74-2|WIPF2 nc|ENSG00000171475|Q8TF74-2|WIPF2 MULTI-MSMS UPN47_class_I_Rep_2 3 582.2669067382812 2 582.266404 1162.51826 0.51886 0.00030212 -0.089629 -5.2188E-05 0.42923 0.00024993 582.2662198895476 56.981 1.1998 60.281 59.954 61.154 3.3009 226 108 3 0 0 0 0.0047467 6 13043 13006;13043;13078;13117;13166;13189 93.938 53.988 1 676690 8185 4520 5006 5011 10132;10133;10134;10135;10136;10137 10133 -0.05650277238760282 FLDDFESKY 9 Unmodified _FLDDFESKY_ 0 0 0 nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475.14,WIPF2,chr17,+,I5.1,40260839,40262524|30|5.1|2|intron;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF nc|ENSG00000171475|Q8TF74-2|WIPF2 nc|ENSG00000171475|Q8TF74-2|WIPF2 MULTI-MSMS UPN47_class_I_Rep_3 4 582.2666625976562 2 582.266404 1162.51826 0.37545 0.00021861 0.14565 8.4809E-05 0.52111 0.00030342 582.2664107062691 57.092 1.1204 60.26 60 61.121 3.1681 220 101 3 0 0 0 0.0047467 5 13181 13109;13144;13181;13220;13272 103.82 56.075 1 610580 8186 4520 5006 5011 10138;10139;10140;10141;10142 10140 -0.05650277238760282 FLDDFPVF 8 Unmodified _FLDDFPVF_ 0 0 0 REV__L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|215|1|anti-sense REV__L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|215|1|anti-sense MSMS UPN48_class_I_Rep_3 7 500.24407958984375 2 500.244744 998.474934 NaN NaN NaN NaN NaN NaN NaN 27.63 1 31.386 30.886 31.886 3.7555 0 0 0 0.40738 1 3651 3651 0.79363 0 1 + 8187 25008 5007 5012 10143 10143 -0.0243642222537801 FLDDGHTFNY 10 Unmodified _FLDDGHTFNY_ 0 0 0 ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB ENSG00000089597|ENST00000356638|GANAB ENSG00000089597|ENST00000356638|GANAB MULTI-MSMS UPN47_class_I_Rep_1 2 614.765869140625 2 614.767103 1227.51965 0.38931 0.00023933 -0.16465 -0.00010122 0.22465 0.00013811 614.7669029394605 55.764 0.71576 59.242 58.941 59.657 3.4785 91 42 3 0 0 0 0.21655 6 12663 12626;12663;12668;12712;12752;12766 41.956 20.209 1 194080 8188 1339 5008 5013 10144;10145;10146;10147;10148;10149 10145 -0.08500643149977805 FLDDGHTFNY 10 Unmodified _FLDDGHTFNY_ 0 0 0 ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB ENSG00000089597|ENST00000356638|GANAB ENSG00000089597|ENST00000356638|GANAB MULTI-MSMS UPN47_class_I_Rep_2 3 615.26904296875 2 614.767103 1227.51965 0.51809 0.00031851 -0.53041 -0.00032608 -0.012314 -7.5705E-06 614.7667826556764 55.98 0.74975 59.289 58.997 59.747 3.3095 95 46 3 0 0 0 0.25511 4 12769 12729;12769;12815;12859 38.176 20.041 1 147130 8189 1339 5008 5013 10150;10151;10152;10153 10151 -0.08500643149977805 FLDDGHTFNY 10 Unmodified _FLDDGHTFNY_ 0 0 0 ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB ENSG00000089597|ENST00000356638|GANAB ENSG00000089597|ENST00000356638|GANAB MULTI-MSMS UPN47_class_I_Rep_3 4 614.7674560546875 2 614.767103 1227.51965 0.41017 0.00025216 -0.082685 -5.0832E-05 0.32749 0.00020133 614.7668763347668 56.048 0.74616 59.22 58.996 59.742 3.1721 101 48 3 0 0 0 0.36548 4 12896 12810;12854;12896;12940 22.658 13.311 1 157590 8190 1339 5008 5013 10154;10155;10156;10157 10156 -0.08500643149977805 FLDELSVQIF 10 Unmodified _FLDELSVQIF_ 0 0 0 L1ME1_dup1473|chr1:147971789-147972661:-|1.1444872003917648|0.0480229247671336|4.57|151.0|39|1|anti-sense;L1ME1_dup1453|chr1:145649113-145649986:-|1.1374294696155232|0.0501975199229743|4.5|151.0|51|2|anti-sense L1ME1_dup1473|chr1:147971789-147972661:-|1.1444872003917648|0.0480229247671336|4.57|151.0|39|1|anti-sense L1ME1_dup1473|chr1:147971789-147972661:-|1.1444872003917648|0.0480229247671336|4.57|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_3 7 605.8221435546875 2 605.821347 1209.62814 NaN NaN NaN NaN NaN NaN NaN 70.5 1 74.019 73.519 74.519 3.5185 0 0 0 0.53105 1 16316 16316 12.241 0 1 8191 12225 5009 5014 10158 10158 0.03171148100409482 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 NUCB1-RUVBL2|1|fusion;nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 NUCB1-RUVBL2|1|fusion NUCB1-RUVBL2|1|fusion MULTI-MSMS UPN47_class_I_Rep_1 2 623.2911987304688 2 623.290942 1244.56733 0.016823 1.0486E-05 -0.013634 -8.4979E-06 0.0031893 1.9879E-06 623.2908859463245 38.396 0.65722 42.061 41.801 42.458 3.6652 80 47 2 0 0 0 0.2823 3 7391 7353;7391;7431 35.612 20.774 1 166080 8192 4989 5010 5015 10159;10160;10161 10160 -0.045169889497856275 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 NUCB1-RUVBL2|1|fusion;nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 NUCB1-RUVBL2|1|fusion NUCB1-RUVBL2|1|fusion MULTI-MSMS UPN47_class_I_Rep_2 3 623.2921752929688 2 623.290942 1244.56733 0.045065 2.8089E-05 -0.078401 -4.8867E-05 -0.033336 -2.0778E-05 623.2908778127821 38.702 0.60823 42.08 41.813 42.421 3.3785 71 43 2 0 0 0 0.35313 4 7520 7520;7536;7584;7588 23.801 13.65 1 110400 8193 4989 5010 5015 10162;10163;10164;10165 10162 -0.045169889497856275 FLDESRSTQY 10 Unmodified _FLDESRSTQY_ 0 0 0 NUCB1-RUVBL2|1|fusion;nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 NUCB1-RUVBL2|1|fusion NUCB1-RUVBL2|1|fusion MULTI-MSMS UPN47_class_I_Rep_3 4 623.2891845703125 2 623.290942 1244.56733 -0.044631 -2.7818E-05 -0.42349 -0.00026395 -0.46812 -0.00029177 623.2909099131728 38.829 0.5218 42.067 41.842 42.363 3.238 83 40 3 0 0 0 0.38794 4 7631 7563;7601;7631;7671 20.581 10.507 1 120600 8194 4989 5010 5015 10166;10167;10168;10169 10168 -0.045169889497856275 FLDEYIFLA 9 Unmodified _FLDEYIFLA_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MSMS UPN47_class_I_Rep_3 4 565.7927856445312 2 565.792058 1129.56956 NaN NaN NaN NaN NaN NaN NaN 94.19 1 97.597 97.097 98.097 3.4068 0 0 0 0.2088 1 23450 23450 15.847 5.0233 1 8195 1027 5011 5016 10170 10170 0.009960915259625835 FLDEYIFLA 9 Unmodified _FLDEYIFLA_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MSMS UPN47_class_I_Rep_3 4 565.792724609375 2 565.792058 1129.56956 NaN NaN NaN NaN NaN NaN NaN 94.417 1 97.824 97.324 98.324 3.4068 0 0 0 0.081393 1 23501 23501 28.487 12.64 1 8196 1027 5011 5016 10171 10171 0.009960915259625835 FLDFFFCSI 9 Unmodified _FLDFFFCSI_ 0 0 0 L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|92|2|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|92|2|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|92|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 569.2925415039062 2 569.767529 1137.5205 0.3874 0.00022073 0.26017 0.00014824 0.64757 0.00036897 569.7676046539024 58.915 0.059593 62.332 62.284 62.344 3.4171 5 3 2 0 0 0 0.12281 1 13627 13627 4.3292 0 1 20485 8197 11726 5012 5017 10172 10172 -0.042755200346391575 FLDGHDLQL 9 Unmodified _FLDGHDLQL_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-MSMS UPN47_class_I_Rep_1 2 529.2693481445312 2 529.269281 1056.52401 0.35509 0.00018794 -0.030355 -1.6066E-05 0.32473 0.00017187 529.269163671314 61.403 1.2208 64.785 64.526 65.747 3.3815 212 89 4 0 0 0 0.0054033 3 14417 14417;14622;14682 78.728 36.888 1 1144700 8198 5322 5013 5018 10173;10174;10175 10173 -0.0019913393641672883 FLDGHDLQL 9 Unmodified _FLDGHDLQL_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-MSMS UPN47_class_I_Rep_2 3 529.2693481445312 2 529.269281 1056.52401 0.21724 0.00011498 0.11134 5.8931E-05 0.32858 0.00017391 529.2692112334264 61.822 1.4009 65.081 64.641 66.042 3.2594 224 90 4 0 0 0 0.021334 4 14503 14464;14503;14612;14654 62.573 18.721 1 1147500 8199 5322 5013 5018 10176;10177;10178;10179 10177 -0.0019913393641672883 FLDGHDLQL 9 Unmodified _FLDGHDLQL_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-MSMS UPN47_class_I_Rep_3 4 529.2693481445312 2 529.269281 1056.52401 0.32746 0.00017331 0.014032 7.4265E-06 0.34149 0.00018074 529.2691620058732 61.781 1.3034 64.948 64.598 65.902 3.1667 236 89 4 0 0 0 0.0070866 4 14590 14548;14590;14710;14801 71.922 30.083 1 1039600 8200 5322 5013 5018 10180;10181;10182;10183 10181 -0.0019913393641672883 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-SECPEP UPN46_class_I_Rep_3 1 510.8445129394531 2 511.263665 1020.51278 0.29731 0.000152 -0.23016 -0.00011767 0.067153 3.4333E-05 511.26355871783795 78.208 0.11585 78.208 78.15 78.266 0 28 13 3 0 0 0 0.044386 1 18322 18322 45.7 9.5726 1 154560 8201 5600 5014 5019 10184 10184 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_1 2 511.2637023925781 2 511.263665 1020.51278 0.23754 0.00012145 -0.22413 -0.00011459 0.013414 6.8582E-06 511.2635801107934 73.682 0.61447 77.068 76.601 77.215 3.3861 151 57 4 0 0 0 0.010597 3 18071 18033;18071;18107 142.08 34.893 1 1832300 8202 5600 5014 5019 10185;10186;10187 10186 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_1 2 511.2637634277344 2 511.263665 1020.51278 0.2393 0.00012235 -0.042237 -2.1594E-05 0.19707 0.00010075 511.2635644057518 73.888 0.48262 77.274 77.129 77.612 3.3861 101 46 5 0 0 0 0.0029438 2 18143 18143;18178 149.91 35.265 1 1988100 8203 5600 5014 5019 10188;10189 10188 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_1 2 511.2644348144531 2 511.263665 1020.51278 0.24229 0.00012387 1.309 0.00066922 1.5512 0.00079309 511.2642347166064 74.452 0.32453 77.846 77.793 78.117 3.3937 52 27 2 0 0 0 0.057664 3 18317 18317;18355;18397 45.7 9.5726 1 382800 8204 5600 5014 5019 10190;10191;10192 10190 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_1 2 511.26373291015625 2 511.263665 1020.51278 0.2441 0.0001248 0.22952 0.00011735 0.47362 0.00024214 511.26359080760636 74.773 0.34858 78.167 78.109 78.458 3.3937 44 32 2 0 0 0 0.11355 1 18437 18437 31.268 6.2774 1 143030 8205 5600 5014 5019 10193 10193 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_2 3 511.26373291015625 2 511.263665 1020.51278 0.12549 6.4159E-05 -0.040253 -2.058E-05 0.085237 4.3579E-05 511.26363346839486 73.887 0.53896 77.192 76.75 77.289 3.3048 162 50 4 0 0 0 0.00027817 4 18179 18105;18145;18179;18215 165.72 35.948 1 2377800 8206 5600 5014 5019 10194;10195;10196;10197 10196 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_2 3 511.2636413574219 2 511.263665 1020.51278 0.12896 6.593E-05 0.056152 2.8709E-05 0.18511 9.4639E-05 511.26362779957975 74.134 0.64926 77.439 77.289 77.939 3.3048 200 68 4 0 0 0 7.7747E-05 5 18280 18248;18280;18313;18351;18385 163.04 36.47 1 1282600 8207 5600 5014 5019 10198;10199;10200;10201;10202 10199 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MSMS UPN47_class_I_Rep_2 3 511.2650146484375 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 74.761 1 78.073 77.573 78.573 3.3127 0 0 0 0.075414 1 18432 18432 29.841 8.3036 1 8208 5600 5014 5019 10203 10203 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MSMS UPN47_class_I_Rep_2 3 511.2646484375 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 74.884 1 78.196 77.696 78.696 3.3127 0 0 0 0.046227 1 18466 18466 38.176 9.094 1 8209 5600 5014 5019 10204 10204 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MSMS UPN47_class_I_Rep_2 3 511.2638244628906 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 75.048 1 78.36 77.86 78.86 3.3127 0 0 0 0.046227 1 18513 18513 38.176 9.094 1 8210 5600 5014 5019 10205 10205 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_3 4 511.2636413574219 2 511.263665 1020.51278 0.27926 0.00014277 -0.25885 -0.00013234 0.020408 1.0434E-05 511.2635549519584 73.875 0.50909 77.112 76.683 77.192 3.2363 148 47 4 0 0 0 0.00027817 3 18266 18197;18233;18266 165.72 35.948 1 2259600 8211 5600 5014 5019 10206;10207;10208 10208 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_3 4 511.2636413574219 2 511.263665 1020.51278 0.27994 0.00014312 -0.094985 -4.8562E-05 0.18495 9.456E-05 511.26353418174955 74.031 0.30598 77.268 77.156 77.462 3.2363 138 36 5 0 0 0 0.00083439 2 18301 18301;18335 193.29 51.215 1 1367400 8212 5600 5014 5019 10209;10210 10209 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN47_class_I_Rep_3 4 511.2636413574219 2 511.263665 1020.51278 0.28065 0.00014349 0.28743 0.00014695 0.56808 0.00029044 511.26375513503626 74.26 0.91401 77.497 77.453 78.367 3.2363 225 96 3 0 0 0 7.7747E-05 7 18367 18367;18403;18438;18474;18510;18551;18592 163.04 36.47 1 943230 8213 5600 5014 5019 10211;10212;10213;10214;10215;10216;10217 10211 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 511.263665 1020.51278 0.29677 0.00015173 -0.24379 -0.00012464 0.052982 2.7088E-05 511.263478053098 78.113 0.16029 78.113 77.99 78.15 0 0.13371 -0.0013055 NaN 45.7 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 328300 8214 5600 5014 5019 0.003340439694284214 FLDGNEMTL 9 Oxidation (M) _FLDGNEM(Oxidation (M))TL_ FLDGNEM(1)TL FLDGNEM(96)TL 0 0 1 ENSG00000169504|ENST00000374379|CLIC4 ENSG00000169504|ENST00000374379|CLIC4 ENSG00000169504|ENST00000374379|CLIC4 MULTI-MSMS UPN46_class_I_Rep_3 1 528.2390747070312 2 528.239332 1054.46411 0.25546 0.00013494 -0.54219 -0.0002864 -0.28673 -0.00015146 528.239039408546 59.519 0.56194 59.519 59.16 59.722 0 106 62 3 0 0 0 0.0078401 3 13137 13102;13137;13173 103.35 51.085 1 610490 8215 4422 5015 5020 10218;10219;10220 10219 141 -0.060941926619761944 FLDHIIASV 9 Unmodified _FLDHIIASV_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|3|intron;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|4|intron;nc|ENSG00000120733|Q7LBC6-3|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|2|intron nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS UPN47_class_I_Rep_1 2 507.78466796875 2 507.784567 1013.55458 0.18498 9.3931E-05 0.29852 0.00015158 0.4835 0.00024551 507.7845057950396 66.519 0.70899 69.876 69.496 70.205 3.3576 96 47 3 0 0 0 0.26948 4 15970 15876;15929;15970;16008 15.847 3.8321 1 102260 8216 2339 5016 5021 10221;10222;10223;10224 10223 0.048346444486242035 FLDHIIASV 9 Unmodified _FLDHIIASV_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|3|intron;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|4|intron;nc|ENSG00000120733|Q7LBC6-3|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|2|intron nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MSMS UPN47_class_I_Rep_2 3 507.78411865234375 2 507.784567 1013.55458 NaN NaN NaN NaN NaN NaN NaN 66.593 1 69.852 69.352 70.352 3.2588 0 0 0 0.13551 1 16007 16007 20.454 5.2051 1 8217 2339 5016 5021 10225 10225 0.048346444486242035 FLDHIIASV 9 Unmodified _FLDHIIASV_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|3|intron;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|4|intron;nc|ENSG00000120733|Q7LBC6-3|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|2|intron nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS UPN47_class_I_Rep_3 4 507.7846984863281 2 507.784567 1013.55458 0.25105 0.00012748 0.12347 6.2696E-05 0.37452 0.00019018 507.78452090674654 66.894 0.73528 70.086 69.694 70.429 3.1914 90 56 2 0 0 0 0.28552 3 16127 16127;16170;16209 14.838 0 1 108370 8218 2339 5016 5021 10226;10227;10228 10226 0.048346444486242035 FLDIAILLVSY 11 Unmodified _FLDIAILLVSY_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|126|2|anti-sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|126|2|anti-sense MSMS UPN47_class_I_Rep_3 4 633.8726196289062 2 633.87084 1265.72713 NaN NaN NaN NaN NaN NaN NaN 86.505 1 89.885 89.385 90.385 3.3801 0 0 0 0.38417 1 21681 21681 2.9952 0 1 + 8219 26667 5017 5022 10229 10229 0.10489171065341907 FLDKLSDYY 9 Unmodified _FLDKLSDYY_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 582.2850341796875 2 582.284597 1162.55464 0.37868 0.0002205 0.021424 1.2475E-05 0.40011 0.00023298 582.2845482603634 62.766 0.76025 66.126 65.782 66.543 3.3595 106 49 3 0 0 0 0.04399 5 14824 14738;14746;14781;14824;14861 51.415 24.532 1 204170 8220 1365 5018 5023 10230;10231;10232;10233;10234 10233 -0.02013400342048044 FLDKLSDYY 9 Unmodified _FLDKLSDYY_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 582.2840576171875 2 582.284597 1162.55464 0.42652 0.00024836 -0.24468 -0.00014247 0.18184 0.00010589 582.284334447219 63.033 0.63297 66.289 65.993 66.626 3.2558 76 42 2 0 0 0 0.10568 4 14919 14861;14901;14919;14960 32.786 9.387 1 209090 8221 1365 5018 5023 10235;10236;10237;10238 10237 -0.02013400342048044 FLDKLSDYY 9 Unmodified _FLDKLSDYY_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 582.2854614257812 2 582.284597 1162.55464 0.41713 0.00024289 0.059969 3.4919E-05 0.47709 0.0002778 582.2845729651325 63.09 0.73056 66.26 65.905 66.635 3.1698 87 47 2 0 0 0 0.1249 7 15031 14930;14934;14965;14983;15031;15073;15088 29.082 5.8145 1 161360 8222 1365 5018 5023 10239;10240;10241;10242;10243;10244;10245 10243 -0.02013400342048044 FLDKLSDYY 9 Unmodified _FLDKLSDYY_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 582.284597 1162.55464 0.41713 0.00024289 0.059969 3.4919E-05 0.47709 0.0002778 582.2845729651325 63.09 0.73056 66.26 65.905 66.635 3.1698 0.035033 0.00014611 NaN 51.415 87 47 2 NaN NaN NaN NaN 0 NaN NaN 0 161360 8223 1365 5018 5023 -0.02013400342048044 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN47_class_I_Rep_1 2 571.2734985351562 2 571.274229 1140.53391 0.38383 0.00021927 -1.4226 -0.00081272 -1.0388 -0.00059345 571.2727701555929 77.617 0.73033 81.046 80.752 81.482 3.4289 110 71 2 0 0 0 0.04399 2 19268 19241;19268 51.415 17.014 1 146110 8224 1476;6834 5019 5024 10246;10247 10247 -0.030739907217139262 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN47_class_I_Rep_2 3 571.273681640625 2 571.274229 1140.53391 0.47989 0.00027415 -1.7002 -0.00097126 -1.2203 -0.00069711 571.2727590762638 77.703 0.7461 81.045 80.727 81.473 3.3428 104 76 2 0 0 0 0.12096 1 19313 19313 29.841 11.694 1 146320 8225 1476;6834 5019 5024 10248 10248 -0.030739907217139262 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN47_class_I_Rep_3 4 571.2723388671875 2 571.274229 1140.53391 0.46471 0.00026548 -1.5989 -0.0009134 -1.1342 -0.00064792 571.2727099070104 77.762 0.82301 81.043 80.669 81.492 3.2816 127 88 2 0 0 0 0.22932 1 19410 19410 18.373 6.1324 1 137590 8226 1476;6834 5019 5024 10249 10249 -0.030739907217139262 FLDNPDAFYY 10 Unmodified _FLDNPDAFYY_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_1 2 632.7803955078125 2 632.779679 1263.5448 0.46107 0.00029176 -0.11733 -7.4246E-05 0.34374 0.00021751 632.7796176083181 76.907 0.68346 80.322 80.024 80.707 3.4149 132 61 3 0 0 0 0.21655 5 19068 18997;19003;19033;19068;19106 41.956 19.219 1 175940 8227 2153 5020 5025 10250;10251;10252;10253;10254 10253 -0.07642588347425772 FLDNPDAFYY 10 Unmodified _FLDNPDAFYY_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_2 3 632.779541015625 2 632.779679 1263.5448 0.4731 0.00029937 -0.091818 -5.8101E-05 0.38128 0.00024126 632.7796106579942 77.046 0.61893 80.377 80.067 80.686 3.3315 132 64 3 0 0 0 0.34027 4 19114 19035;19070;19114;19151 24.991 7.8781 1 159080 8228 2153 5020 5025 10255;10256;10257;10258 10257 -0.07642588347425772 FLDNPDAFYY 10 Unmodified _FLDNPDAFYY_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_3 4 632.780029296875 2 632.779679 1263.5448 0.4712 0.00029817 -0.17778 -0.0001125 0.29342 0.00018567 632.7795183591093 77.042 0.67439 80.311 80.051 80.725 3.269 130 72 2 0 0 0 0.31534 4 19179 19149;19179;19214;19249 28.495 16.254 1 153630 8229 2153 5020 5025 10259;10260;10261;10262 10260 -0.07642588347425772 FLDPGQSLF 9 Unmodified _FLDPGQSLF_ 0 0 0 REV__ENST00000469665.1_1_3:49160056-49160527:-|nuORF REV__ENST00000469665.1_1_3:49160056-49160527:-|nuORF MSMS UPN48_class_I_Rep_1 5 512.2616577148438 2 512.260925 1022.5073 NaN NaN NaN NaN NaN NaN NaN 75.969 1 79.469 78.969 79.969 3.4996 0 0 0 0.38639 1 18029 18029 3.9444 1.0552 1 + 8230 22496 5021 5026 10263 10263 -0.0030563482237084827 FLDPNNIPKA 10 Unmodified _FLDPNNIPKA_ 0 0 0 nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF nc|ENSG00000159063|Q9BVK2-2|ALG8 nc|ENSG00000159063|Q9BVK2-2|ALG8 MULTI-MSMS UPN46_class_I_Rep_3 1 564.8064575195312 2 564.806031 1127.59751 0.37475 0.00021166 1.0778 0.00060876 1.4526 0.00082042 564.8062043334963 54.962 0.37823 54.962 54.746 55.124 0 59 43 2 0 0 0 0.32646 1 11931 11931 26.268 15.444 1 367310 8231 3820 5022 5027 10264 10264 0.038814145060541705 FLDPRPLTV 9 Unmodified _FLDPRPLTV_ 0 0 0 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 MULTI-MSMS UPN47_class_I_Rep_1 2 529.305908203125 2 529.305667 1056.59678 0.34636 0.00018333 -0.15402 -8.1524E-05 0.19234 0.00010181 529.3055077544708 58.264 0.32214 61.701 61.472 61.794 3.437 31 21 2 0 0 0 0.31407 1 13452 13452 13.042 2.9685 1 84536 8232 3059 5023 5028 10265 10265 0.07074619856962272 FLDPRPLTV 9 Unmodified _FLDPRPLTV_ 0 0 0 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 ENSG00000138061|ENST00000610745|CYP1B1 MULTI-MSMS UPN47_class_I_Rep_2 3 529.3052978515625 2 529.305667 1056.59678 0.28231 0.00014943 -0.75964 -0.00040208 -0.47733 -0.00025265 529.8066405010355 58.261 0.15005 61.543 61.49 61.64 3.2818 9 7 2 0 0 0 0.36392 1 13495 13495 10.074 0 1 72986 8233 3059 5023 5028 10266 10266 0.07074619856962272 FLDQGLLH 8 Unmodified _FLDQGLLH_ 0 0 0 REV__L1M2_dup8459|chr18:2715863-2717257:-|2.488071826578998|0.2183603941913096|3.51|151.0|37|1|anti-sense REV__L1M2_dup8459|chr18:2715863-2717257:-|2.488071826578998|0.2183603941913096|3.51|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 471.7554626464844 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 48.775 1 48.775 48.275 49.275 0 0 0 0 0.38547 1 10189 10189 13.508 0 1 + 8234 24244 5024 5029 10267 10267 0.023978022430469537 FLDSTGSRLDY 11 Unmodified _FLDSTGSRLDY_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS UPN47_class_I_Rep_1 2 637.3071899414062 2 637.306592 1272.59863 0.32134 0.00020479 0.10017 6.3839E-05 0.42151 0.00026863 637.3065862042133 50.498 0.51784 54.127 53.931 54.449 3.6285 31 22 2 0 0 0 0.31564 3 11097 11067;11097;11132 14.218 6.0626 1 89922 8235 2961 5025 5030 10268;10269;10270 10269 -0.026764159156982714 FLDSTGSRLDY 11 Unmodified _FLDSTGSRLDY_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS UPN47_class_I_Rep_2 3 637.3077392578125 2 637.306592 1272.59863 0.4737 0.0003019 -0.16568 -0.00010559 0.30802 0.00019631 637.306601421857 50.775 0.44091 54.114 53.979 54.42 3.3386 31 24 2 0 0 0 0.30774 2 11221 11177;11221 14.957 6.8016 1 81089 8236 2961 5025 5030 10271;10272 10272 -0.026764159156982714 FLDSTGSRLDY 11 Unmodified _FLDSTGSRLDY_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS UPN47_class_I_Rep_3 4 637.3060302734375 2 637.306592 1272.59863 0.54553 0.00034767 -0.18956 -0.00012081 0.35597 0.00022686 637.3064007957303 50.999 0.48172 54.215 53.971 54.453 3.2163 31 21 2 0 0 0 0.47271 4 11317 11298;11317;11356;11370 8.4443 3.1474 1 87716 8237 2961 5025 5030 10273;10274;10275;10276 10274 -0.026764159156982714 FLDTSNQHL 9 Unmodified _FLDTSNQHL_ 0 0 0 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 MULTI-MSMS UPN46_class_I_Rep_3 1 537.7642822265625 2 537.764363 1073.51417 0.32509 0.00017482 -0.30297 -0.00016293 0.022122 1.1897E-05 537.7642140988137 44.959 0.61839 44.959 44.7 45.318 0 93 58 2 0 0 0 0.081756 1 9100 9100 38.176 11.907 1 354530 8238 2830 5026 5031 10277 10277 -0.019643219418185254 FLDTSNQHL 9 Unmodified _FLDTSNQHL_ 0 0 0 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 MULTI-SECPEP UPN47_class_I_Rep_2 3 537.76416015625 2 537.764363 1073.51417 -0.010421 -5.604E-06 0.12998 6.9901E-05 0.11956 6.4297E-05 537.7643463633951 40.889 0.76558 44.255 43.954 44.719 3.3655 149 67 3 0 0 0 0.083569 1 8188 8188 26.268 26.268 1 240010 8239 2830 5026 5031 10278 10278 -0.019643219418185254 FLDTSNQHL 9 Unmodified _FLDTSNQHL_ 0 0 0 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 MULTI-MATCH UPN47_class_I_Rep_1 2 2 537.764363 1073.51417 -0.018695 -1.0054E-05 -0.13342 -7.175E-05 -0.15212 -8.1803E-05 537.7642221611203 40.494 0.79249 44.166 43.945 44.737 3.6719 -0.048341 -0.00015839 NaN 26.268 130 66 3 NaN NaN NaN NaN 0 NaN NaN 0 232070 8240 2830 5026 5031 -0.019643219418185254 FLDTSNQHL 9 Unmodified _FLDTSNQHL_ 0 0 0 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 ENSG00000134061|ENST00000256447|CD180 MULTI-MATCH UPN47_class_I_Rep_3 4 2 537.764363 1073.51417 -0.0094245 -5.0682E-06 0.046079 2.478E-05 0.036654 1.9711E-05 537.764289633743 40.985 0.75615 44.222 43.935 44.691 3.2372 0.0079133 3.4666E-05 NaN 26.268 104 59 2 NaN NaN NaN NaN 0 NaN NaN 0 232030 8241 2830 5026 5031 -0.019643219418185254 FLDTVGWVY 9 Unmodified _FLDTVGWVY_ 0 0 0 REV__L1ME1_dup28752|chr18:63287413-63287671:+|1.0262198784237309|0.0082403420704848|6.96|150.0|7|2|sense REV__L1ME1_dup28752|chr18:63287413-63287671:+|1.0262198784237309|0.0082403420704848|6.96|150.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.275634765625 2 550.276575 1098.5386 0.45146 0.00024843 -1.802 -0.00099158 -1.3505 -0.00074315 550.2744682349474 50.632 0.47703 53.971 53.75 54.227 3.3386 48 25 3 0 0 0 0.25207 1 11136 11136 16.942 2.3606 1 77491 + 8242 27735 5027 5032 10279 10279 -0.0067306178827948315 FLDTVGWVY 9 Unmodified _FLDTVGWVY_ 0 0 0 REV__L1ME1_dup28752|chr18:63287413-63287671:+|1.0262198784237309|0.0082403420704848|6.96|150.0|7|2|sense REV__L1ME1_dup28752|chr18:63287413-63287671:+|1.0262198784237309|0.0082403420704848|6.96|150.0|7|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 550.276575 1098.5386 0.28683 0.00015784 -2.5242 -0.001389 -2.2373 -0.0012312 550.2750143936108 50.551 0.23055 54.179 54.051 54.282 3.6285 0.10423 -0.00019934 NaN 16.942 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 32222 + 8243 27735 5027 5032 -0.0067306178827948315 FLDYVYIY 8 Unmodified _FLDYVYIY_ 0 0 0 REV__L1ME1_dup3619|chr2:87693364-87694850:+|1.1615147572063118|0.0105823806041689|6.78|149.0|81|2|anti-sense REV__L1ME1_dup3619|chr2:87693364-87694850:+|1.1615147572063118|0.0105823806041689|6.78|149.0|81|2|anti-sense MSMS UPN47_class_I_Rep_1 2 548.2742919921875 2 548.273501 1094.53245 NaN NaN NaN NaN NaN NaN NaN 46.033 1 49.733 49.233 50.233 3.6999 0 0 0 0.40604 1 9726 9726 2.5775 0 1 + 8244 27767 5028 5033 10280 10280 -0.011035800197987555 FLEACSWGP 9 Unmodified _FLEACSWGP_ 0 0 0 ENST00000540534.5_1_20:62271485-62272211:-|nuORF ENST00000540534.5_1_20:62271485-62272211:-|nuORF ENST00000540534.5_1_20:62271485-62272211:-|nuORF MSMS UPN46_class_I_Rep_3 1 505.2286071777344 2 505.226028 1008.4375 NaN NaN NaN NaN NaN NaN NaN 105.13 1 105.13 104.63 105.63 0 0 0 0 0.39428 1 25649 25649 2.0598 0.21551 1 8245 7352 5029 5034 10281 10281 -0.06637836762638472 FLEDKKHI 8 Unmodified _FLEDKKHI_ 0 0 0 REV__Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|93|1|anti-sense REV__Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|93|1|anti-sense MSMS UPN48_class_I_Rep_3 7 515.29248046875 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 66.653 1 70.16 69.66 70.66 3.5077 0 0 0 0.39996 1 15155 15155 7.9102 0 1 + 8246 32350 5030 5035 10282 10282 0.05234046822897653 FLEDVVPTI 9 Unmodified _FLEDVVPTI_ 0 0 0 REV__Tigger17a_dup937|chr7:36509977-36510449:+|3.5426943458411784|0.4356381062176116|3.02|150.0|13|3|sense REV__Tigger17a_dup937|chr7:36509977-36510449:+|3.5426943458411784|0.4356381062176116|3.02|150.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.7848510742188 2 516.784233 1031.55391 0.28369 0.00014661 0.32443 0.00016766 0.60812 0.00031427 516.7843985473809 76.289 0.49434 79.704 79.52 80.014 3.4149 63 43 2 0 0 0 0.41259 1 18864 18864 7.2892 0 1 103470 + 8247 32610 5031 5036 10283 10283 0.03939805008917574 FLEDVVPTI 9 Unmodified _FLEDVVPTI_ 0 0 0 REV__Tigger17a_dup937|chr7:36509977-36510449:+|3.5426943458411784|0.4356381062176116|3.02|150.0|13|3|sense REV__Tigger17a_dup937|chr7:36509977-36510449:+|3.5426943458411784|0.4356381062176116|3.02|150.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.784423828125 2 516.784233 1031.55391 0.10468 5.4097E-05 0.55844 0.00028859 0.66312 0.00034269 516.7844332121215 76.456 0.4551 79.778 79.611 80.067 3.3216 81 45 2 0 0 0 0.33654 2 18945 18901;18945 11.64 0 1 134910 + 8248 32610 5031 5036 10284;10285 10285 0.03939805008917574 FLEEPPYHF 9 Unmodified _FLEEPPYHF_ 0 0 0 L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|47|3|anti-sense L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|47|3|anti-sense L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_2 3 589.7800903320312 2 589.779482 1177.54441 NaN NaN NaN NaN NaN NaN NaN 49.343 1 52.689 52.189 53.189 3.3465 0 0 0 0.39428 1 10749 10749 2.0598 0 1 8249 10418 5032 5037 10286 10286 -0.037259632766335926 FLEERSVLL 9 Unmodified _FLEERSVLL_ 0 0 0 nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;ENSG00000127914.18,AKAP9,chr7,+,I49.1,92101057,92102588|25|7.9|1|intron;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 MULTI-MSMS UPN47_class_I_Rep_3 4 553.3177490234375 2 553.316232 1104.61791 0.3634 0.00020108 -0.04742 -2.6238E-05 0.31598 0.00017484 553.3162396989305 60.197 0.42698 63.362 63.144 63.571 3.1651 30 24 2 0 0 0 0.20317 1 14154 14154 20.415 3.3016 1 67486 8250 2577 5033 5038 10287 10287 0.06978585165870754 FLEERSVLL 9 Unmodified _FLEERSVLL_ 0 0 0 nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;ENSG00000127914.18,AKAP9,chr7,+,I49.1,92101057,92102588|25|7.9|1|intron;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 553.316232 1104.61791 0.44196 0.00024454 -0.12321 -6.8172E-05 0.31875 0.00017637 553.3162352907173 59.867 0.32987 63.266 63.061 63.391 3.3982 -0.048393 -2.389E-05 NaN 20.415 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 108280 8251 2577 5033 5038 0.06978585165870754 FLEEVTEYY 9 Unmodified _FLEEVTEYY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MSMS UPN47_class_I_Rep_1 2 596.7739868164062 2 596.774062 1191.53357 0.37927 0.00022634 -0.0029683 -1.7714E-06 0.3763 0.00022457 596.7742335501503 71.505 0.41991 74.88 74.683 75.103 3.3751 48 32 2 0 0 0 0.15122 1 17452 17452 25.399 11.493 1 78638 8252 3806 5034 5039 10288 10288 -0.054534104415552065 FLEEVTEYY 9 Unmodified _FLEEVTEYY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MSMS UPN47_class_I_Rep_2 3 596.7744750976562 2 596.774062 1191.53357 0.42339 0.00025267 0.12339 7.3638E-05 0.54678 0.00032631 596.7741134894745 71.676 0.40269 74.965 74.797 75.2 3.2899 53 32 2 0 0 0 0.15122 1 17514 17514 25.399 11.493 1 96511 8253 3806 5034 5039 10289 10289 -0.054534104415552065 FLEEVTEYY 9 Unmodified _FLEEVTEYY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MSMS UPN47_class_I_Rep_3 4 596.773681640625 2 596.774062 1191.53357 0.45339 0.00027057 0.14031 8.3736E-05 0.5937 0.00035431 596.7742292591001 71.678 0.43668 74.897 74.718 75.154 3.2188 56 31 2 0 0 0 0.15122 3 17611 17573;17582;17611 25.399 18.11 1 111810 8254 3806 5034 5039 10290;10291;10292 10292 -0.054534104415552065 FLEEVTEYY 9 Unmodified _FLEEVTEYY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MATCH UPN48_class_I_Rep_3 7 2 596.774062 1191.53357 0.58383 0.00034841 -5.2094 -0.0031088 -4.6256 -0.0027604 596.7702754039603 71.086 0.068314 74.604 74.577 74.645 3.5185 -0.23244 -0.0061963 NaN 25.399 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 84088 8255 3806 5034 5039 -0.054534104415552065 FLEEYTSQL 9 Unmodified _FLEEYTSQL_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS UPN47_class_I_Rep_3 4 565.75732421875 2 565.274229 1128.53391 0.4391 0.00024821 -2.5565 -0.0014451 -2.1174 -0.0011969 565.2730590521703 67.556 0.10541 70.747 70.689 70.795 3.1914 9 6 2 0 0 0 0.39745 1 16375 16375 8.1555 0.54658 1 35530 8256 2946 5035 5040 10293 10293 -0.025219907216978754 FLEFHLSAYIA 11 Unmodified _FLEFHLSAYIA_ 0 0 0 L1MCa_dup1179|chr3:23425728-23427138:+|1.2426051081476763|0.0156631298316258|6.31|151.0|63|1|anti-sense L1MCa_dup1179|chr3:23425728-23427138:+|1.2426051081476763|0.0156631298316258|6.31|151.0|63|1|anti-sense L1MCa_dup1179|chr3:23425728-23427138:+|1.2426051081476763|0.0156631298316258|6.31|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 437.5626220703125 3 437.564168 1309.67067 NaN NaN NaN NaN NaN NaN NaN 47.175 1 50.419 49.919 50.919 3.2439 0 0 0 0.38417 1 10158 10158 0.45452 0.1855 1 8257 11779 5036 5041 10294 10294 0.028225432286490104 FLEFQYTY 8 Unmodified _FLEFQYTY_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|219|1|anti-sense;Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|189|1|anti-sense;Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|191|1|anti-sense;Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|334|3|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|219|1|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|219|1|anti-sense MSMS UPN47_class_I_Rep_3 4 555.7608642578125 2 555.760758 1109.50696 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.54 114.04 115.04 3.529 0 0 0 0.40746 1 27237 27237 0.69038 0 1 8258 7979 5037 5042 10295 10295 -0.043410545422375435 FLEHHTLFF 9 Unmodified _FLEHHTLFF_ 0 0 0 REV__L1M7_dup344|chr2:71648047-71649060:+|1.1904278863906472|0.0483915074315908|4.62|150.0|56|2|anti-sense REV__L1M7_dup344|chr2:71648047-71649060:+|1.1904278863906472|0.0483915074315908|4.62|150.0|56|2|anti-sense MSMS UPN48_class_I_Rep_2 6 595.8021850585938 2 595.803291 1189.59203 NaN NaN NaN NaN NaN NaN NaN 97.496 1 101.28 100.78 101.78 3.779 0 0 0 0.381 1 23166 23166 5.2307 0 1 + 8259 24739 5038 5043 10296 10296 0.004817357141973844 FLEIILYFIIN 11 Unmodified _FLEIILYFIIN_ 0 0 0 REV__L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|105|1|anti-sense REV__L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|105|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.6076965332031 3 466.607485 1396.80063 0.23045 0.00010753 0.64881 0.00030274 0.87926 0.00041027 466.94215215074445 97.41 0.24947 97.41 97.335 97.585 0 72 27 4 0 0 0 0.68024 1 23696 23696 0.50596 0 1 983190 + 8260 24479 5039 5044 10297 10297 0.11809719507823502 FLEKLLPPV 9 Unmodified _FLEKLLPPV_ 0 0 0 ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2 ENST00000472213.1_1_1:24120901-24121219:+|nuORF ENST00000472213.1_1_1:24120901-24121219:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.3282470703125 2 528.328611 1054.64267 0.32257 0.00017042 -0.19638 -0.00010375 0.12619 6.667E-05 528.328384232242 72.418 0.6767 75.798 75.477 76.153 3.3799 80 51 2 0 0 0 0.23293 2 17711 17656;17711 18.146 3.3081 1 112290 8261 765 5040 5045 10298;10299 10299 0.11753265039214966 FLEKLLPPV 9 Unmodified _FLEKLLPPV_ 0 0 0 ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2 ENST00000472213.1_1_1:24120901-24121219:+|nuORF ENST00000472213.1_1_1:24120901-24121219:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 528.3283081054688 2 528.328611 1054.64267 0.16608 8.7747E-05 -0.17077 -9.022E-05 -0.0046805 -2.4729E-06 528.3284740722846 72.951 0.23692 76.248 76.153 76.39 3.2971 23 19 2 0 0 0 0.47197 1 17913 17913 3.5965 0 1 103650 8262 765 5040 5045 10300 10300 0.11753265039214966 FLEPCPYHH 9 Unmodified _FLEPCPYHH_ 0 0 0 REV__L1MB4_dup8466|chr20:4816354-4816644:+|1.000763049886292|0.0157312341298907|5.99|151.0|21|3|anti-sense REV__L1MB4_dup8466|chr20:4816354-4816644:+|1.000763049886292|0.0157312341298907|5.99|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_2 3 571.7577514648438 2 571.758027 1141.5015 NaN NaN NaN NaN NaN NaN NaN 69.98 1 73.256 72.756 73.756 3.2761 0 0 0 0.38478 1 17024 17024 4.3292 0.73274 1 + 8263 26028 5041 5046 10301 10301 -0.0635905660572007 FLEQFNFIL 9 Unmodified _FLEQFNFIL_ 0 0 0 REV__HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|97|2|anti-sense REV__HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|97|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 585.8133544921875 2 585.813325 1169.6121 0.44156 0.00025867 -0.43218 -0.00025317 0.0093813 5.4957E-06 585.8131039152466 76.446 0.14319 79.956 79.841 79.984 3.5102 37 16 3 0 0 0 0.1249 1 18154 18154 29.082 4.0906 1 194610 + 8264 23340 5042 5047 10302 10302 0.03407486654191416 FLEQVHQLY 9 Unmodified _FLEQVHQLY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_1 2 588.7237548828125 2 588.806031 1175.59751 0.3567 0.00021003 0.12668 7.4591E-05 0.48338 0.00028462 588.8060531561838 55.962 0.60419 59.441 59.176 59.78 3.4785 55 34 2 0 0 0 0.081756 4 12770 12714;12755;12770;12796 38.176 14.969 1 202560 8265 2128 5043 5048 10303;10304;10305;10306 10305 0.01673414506035442 FLEQVHQLY 9 Unmodified _FLEQVHQLY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_2 3 588.8056030273438 2 588.806031 1175.59751 0.51822 0.00030513 -0.13415 -7.8986E-05 0.38407 0.00022614 588.8059413147773 56.19 0.64896 59.491 59.237 59.886 3.3009 68 37 2 0 0 0 0.073198 4 12838 12816;12838;12876;12922 40.239 18.702 1 173370 8266 2128 5043 5048 10307;10308;10309;10310 10308 0.01673414506035442 FLEQVHQLY 9 Unmodified _FLEQVHQLY_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_3 4 588.8050537109375 2 588.806031 1175.59751 0.40028 0.00023569 -0.066501 -3.9156E-05 0.33378 0.00019653 588.8059280994224 56.284 0.66354 59.456 59.224 59.888 3.1721 73 40 2 0 0 0 0.11355 6 12925 12889;12898;12925;12939;12994;13037 31.268 13.122 1 168440 8267 2128 5043 5048 10311;10312;10313;10314;10315;10316 10313 0.01673414506035442 FLFADLYS 8 Unmodified _FLFADLYS_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|252|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|252|2|anti-sense MSMS UPN47_class_I_Rep_2 3 488.2428283691406 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 111.47 1 114.99 114.49 115.49 3.5226 0 0 0 0.40738 1 27130 27130 0.79363 0 1 + 8268 29333 5044 5049 10317 10317 -0.013324222254027518 FLFADLYS 8 Unmodified _FLFADLYS_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|252|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|252|2|anti-sense MSMS UPN47_class_I_Rep_3 4 488.2427062988281 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 20.461 1 23.811 23.311 24.311 3.3496 0 0 0 0.40738 1 2115 2115 0.79363 0 1 + 8269 29333 5044 5049 10318 10318 -0.013324222254027518 FLFAFFFFF 9 Unmodified _FLFAFFFFF_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|180|2|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|180|2|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|180|2|anti-sense MSMS UPN47_class_I_Rep_1 2 616.812255859375 2 616.812596 1231.61064 NaN NaN NaN NaN NaN NaN NaN 57.487 1 60.924 60.424 61.424 3.437 0 0 0 0.39326 1 13204 13204 2.3027 0 1 8270 8631 5045 5050 10319 10319 0.004098973560758168 FLFEPVVKA 9 Unmodified _FLFEPVVKA_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS UPN46_class_I_Rep_3 1 525.3052978515625 2 525.305136 1048.59572 0.28528 0.00014986 -0.021696 -1.1397E-05 0.26358 0.00013846 525.3050098235303 70.299 0.21173 70.299 70.162 70.373 0 38 24 2 0 0 0 0.23293 1 16148 16148 18.146 7.3224 1 192110 8271 1531 5046 5051 10320 10320 0.07336405488103992 FLFEPVVKA 9 Unmodified _FLFEPVVKA_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS UPN46_class_I_Rep_3 1 525.3050537109375 2 525.305136 1048.59572 0.28606 0.00015027 -0.036603 -1.9228E-05 0.24946 0.00013104 525.3050209036048 70.438 0.47845 70.438 70.359 70.837 0 82 50 2 0 0 0 0.10568 3 16181 16181;16207;16244 32.786 17.947 1 373680 8272 1531 5046 5051 10321;10322;10323 10321 0.07336405488103992 FLFEPVVKA 9 Unmodified _FLFEPVVKA_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS UPN47_class_I_Rep_1 2 525.3051147460938 2 525.305136 1048.59572 0.30444 0.00015992 0.028925 1.5194E-05 0.33336 0.00017512 525.3051937683451 64.173 0.4359 67.529 67.325 67.761 3.3557 64 40 2 0 0 0 0.36392 1 15199 15199 10.074 0.72649 1 82670 8273 1531 5046 5051 10324 10324 0.07336405488103992 FLFEPVVKA 9 Unmodified _FLFEPVVKA_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-SECPEP UPN47_class_I_Rep_2 3 525.304443359375 2 525.305136 1048.59572 0.040593 2.1324E-05 0.14942 7.8489E-05 0.19001 9.9812E-05 525.3051968389233 64.509 0.52019 67.765 67.49 68.01 3.2556 68 40 2 0 0 0 0.099407 1 15320 15320 19.257 4.4187 1 110740 8274 1531 5046 5051 10325 10325 0.07336405488103992 FLFEPVVKA 9 Unmodified _FLFEPVVKA_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-SECPEP UPN47_class_I_Rep_3 4 525.7766723632812 2 525.305136 1048.59572 0.33705 0.00017706 -0.13717 -7.2055E-05 0.19988 0.000105 525.3050157989518 64.487 0.6601 67.661 67.44 68.1 3.1741 67 50 2 0 0 0 0.10301 1 15405 15405 18.146 7.3224 1 107880 8275 1531 5046 5051 10326 10326 0.07336405488103992 FLFFFFLIKFY 11 Unmodified _FLFFFFLIKFY_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|49|2|anti-sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|49|2|anti-sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|49|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.2848205566406 3 511.284454 1530.83153 0.26823 0.00013714 0.049129 2.5119E-05 0.31736 0.00016226 511.2843105505981 37.461 0.09008 40.967 40.943 41.033 3.5052 10 8 2 0 0 0 0.67113 1 6381 6381 1.3296 0.11481 1 52387 8276 10604 5047 5052 10327 10327 0.08734917612696336 FLFFFFLIKFY 11 Unmodified _FLFFFFLIKFY_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|49|2|anti-sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|49|2|anti-sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|49|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 511.284454 1530.83153 0.28723 0.00014686 -1.3224 -0.00067614 -1.0352 -0.00052929 511.2837667059614 37.32 0.090836 41.022 40.992 41.083 3.7022 0.027724 -0.00046736 NaN 1.3296 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 65338 8277 10604 5047 5052 0.08734917612696336 FLFFFVGWSM 10 Unmodified _FLFFFVGWSM_ 0 0 0 REV__ENST00000395878.7_1_16:23582258-23582429:+|nuORF REV__ENST00000395878.7_1_16:23582258-23582429:+|nuORF MSMS UPN47_class_I_Rep_3 4 640.8115234375 2 640.81227 1279.60999 NaN NaN NaN NaN NaN NaN NaN 81.668 1 84.991 84.491 85.491 3.3231 0 0 0 0.53105 1 20446 20446 10.824 1.4408 1 + 8278 22117 5048 5053 10328 10328 -0.01863265355268595 FLFFGHVSR 9 Unmodified _FLFFGHVSR_ 0 0 0 ENST00000484946.5_1_7:75616732-75616939:-|nuORF ENST00000484946.5_1_7:75616732-75616939:-|nuORF ENST00000484946.5_1_7:75616732-75616939:-|nuORF MSMS UPN47_class_I_Rep_1 2 555.2993774414062 2 555.298176 1108.5818 NaN NaN NaN NaN NaN NaN NaN 53.111 1 56.638 56.138 57.138 3.5278 0 0 0 0.39518 1 11872 11872 1.8442 0 1 8279 7026 5049 5054 10329 10329 0.0318517277967203 FLFFKNFF 8 Unmodified _FLFFKNFF_ 0 0 0 L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|126|2|anti-sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|126|2|anti-sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|126|2|anti-sense MSMS UPN48_class_I_Rep_2 6 555.2922973632812 2 555.294571 1108.57459 NaN NaN NaN NaN NaN NaN NaN 70.151 1 73.687 73.187 74.187 3.5359 0 0 0 0.40404 1 16301 16301 5.2307 0 1 8280 9713 5050 5055 10330 10330 0.024644401792102144 FLFFTYKY 8 Unmodified _FLFFTYKY_ 0 0 0 REV__L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|26|1|sense REV__L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|26|1|sense MSMS UPN48_class_I_Rep_2 6 564.7919311523438 2 564.791861 1127.56917 NaN NaN NaN NaN NaN NaN NaN 22.502 1 26.145 25.645 26.645 3.6432 0 0 0 0.40738 1 2310 2310 0.79363 0 1 + 8281 26412 5051 5056 10331 10331 0.01048716596756094 FLFFYFYV 8 Unmodified _FLFFYFYV_ 0 0 0 REV__HAL1_dup16660|chr12:50554228-50554738:-|2.6468623449015016|0.0088606356033259|8.22|151.0|22|1|anti-sense REV__HAL1_dup16660|chr12:50554228-50554738:-|2.6468623449015016|0.0088606356033259|8.22|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 573.286865234375 2 573.288954 1144.56336 NaN NaN NaN NaN NaN NaN NaN 66.717 1 69.976 69.476 70.476 3.2588 0 0 0 0.40581 1 16045 16045 2.8892 0 1 + 8282 23368 5052 5057 10332 10332 -0.003143819149272531 FLFGVVSGEA 10 Unmodified _FLFGVVSGEA_ 0 0 0 L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 513.2686157226562 2 513.26875 1024.52295 0.31475 0.00016155 0.12455 6.3926E-05 0.4393 0.00022548 513.2686801727467 83.434 0.42657 83.434 83.141 83.568 0 96 42 3 0 0 0 0.22554 3 19778 19778;19812;19850 54.774 2.5052 1 485720 8283 10564 5053 5058 10333;10334;10335 10333 0.011666516946661432 FLFGVVSGEA 10 Unmodified _FLFGVVSGEA_ 0 0 0 L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.2688598632812 2 513.26875 1024.52295 0.27582 0.00014157 -0.033446 -1.7167E-05 0.24237 0.0001244 513.2686452013764 78.066 1.3085 81.495 81.098 82.407 3.4289 269 128 3 0 0 0 0.15961 6 19386 19348;19386;19422;19456;19492;19527 64.236 11.968 1 2011500 8284 10564 5053 5058 10336;10337;10338;10339;10340;10341 10337 0.011666516946661432 FLFGVVSGEA 10 Unmodified _FLFGVVSGEA_ 0 0 0 L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.268798828125 2 513.26875 1024.52295 0.15088 7.7444E-05 0.062912 3.2291E-05 0.2138 0.00010973 513.2686902396615 78.312 1.5474 81.655 81.2 82.748 3.3428 443 159 4 0 0 0 0.15961 8 19413 19385;19413;19447;19478;19513;19551;19585;19697 64.236 11.968 1 2405800 8285 10564 5053 5058 10342;10343;10344;10345;10346;10347;10348;10349 10343 0.011666516946661432 FLFGVVSGEA 10 Unmodified _FLFGVVSGEA_ 0 0 0 L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.268798828125 2 513.26875 1024.52295 0.29693 0.00015241 -0.074878 -3.8432E-05 0.22206 0.00011397 513.268615353532 78.389 1.6204 81.671 81.227 82.847 3.2816 459 161 4 0 0 0 0.15961 8 19476 19476;19512;19545;19583;19616;19687;19822;19867 64.236 11.968 1 2327500 8286 10564 5053 5058 10350;10351;10352;10353;10354;10355;10356;10357 10350 0.011666516946661432 FLFHHLWK 8 Unmodified _FLFHHLWK_ 0 0 0 REV__L1MB7_dup22747|chr22:45144964-45145837:-|1.4736544439642898|0.2082856773061819|2.82|151.0|49|2|anti-sense REV__L1MB7_dup22747|chr22:45144964-45145837:-|1.4736544439642898|0.2082856773061819|2.82|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2753295898438 2 564.311087 1126.60762 NaN NaN NaN NaN NaN NaN NaN 33.096 1 36.623 36.123 37.123 3.5266 0 0 0 0.40738 1 5118 5118 0.79363 0 1 + 8287 26230 5054 5059 10358 10358 0.04938067021930692 FLFLLYYWC 9 Unmodified _FLFLLYYWC_ 0 0 0 nc|ENSG00000175003|O15245-4|SLC22A1;nc|ENSG00000175003|O15245-3|SLC22A1;nc|ENSG00000175003|O15245-2|SLC22A1;ENSG00000175003|ENST00000366963|SLC22A1 nc|ENSG00000175003|O15245-4|SLC22A1 nc|ENSG00000175003|O15245-4|SLC22A1 MSMS UPN47_class_I_Rep_1 2 634.3137817382812 2 634.314646 1266.61474 NaN NaN NaN NaN NaN NaN NaN 62.834 1 66.194 65.694 66.694 3.3595 0 0 0 0.40038 1 14831 14831 0.6015 0 1 8288 4704 5055 5060 10359 10359 -0.007903812125050536 FLFLPHWLC 9 Unmodified _FLFLPHWLC_ 0 0 0 REV__L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|71|3|anti-sense REV__L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|71|3|anti-sense MSMS UPN48_class_I_Rep_1 5 588.305908203125 2 588.307155 1174.59976 NaN NaN NaN NaN NaN NaN NaN 44.294 1 47.807 47.307 48.307 3.5132 0 0 0 0.39326 1 8414 8414 2.3027 0 1 + 8289 25815 5056 5061 10360 10360 0.019441717101699396 FLFLVMPLF 9 Unmodified _FLFLVMPLF_ 0 0 0 L1MB7_dup15863|chr12:66343569-66344503:-|2.8157630390118764|0.4930200126906192|2.51|151.0|73|3|anti-sense L1MB7_dup15863|chr12:66343569-66344503:-|2.8157630390118764|0.4930200126906192|2.51|151.0|73|3|anti-sense L1MB7_dup15863|chr12:66343569-66344503:-|2.8157630390118764|0.4930200126906192|2.51|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_1 5 563.81103515625 2 563.822107 1125.62966 NaN NaN NaN NaN NaN NaN NaN 64.213 1 67.671 67.171 68.171 3.4578 0 0 0 0.3264 1 14519 14519 9.3474 0.75416 1 8290 10728 5057 5062 10361 10361 0.07187110655490869 FLFMQLYP 8 Unmodified _FLFMQLYP_ 0 0 0 REV__nc|ENSG00000153485|Q8N6I4-2|LYSET REV__nc|ENSG00000153485|Q8N6I4-2|LYSET MSMS UPN47_class_I_Rep_3 4 529.7490844726562 2 529.772614 1057.53067 NaN NaN NaN NaN NaN NaN NaN 26.321 1 29.668 29.168 30.168 3.3478 0 0 0 0.40604 1 3832 3832 2.5775 0 1 + 8291 19712 5058 5063 10362 10362 0.0042108769057449535 FLFPCSFCVL 10 Unmodified _FLFPCSFCVL_ 0 0 0 REV__ENST00000380117.5_1_9:23826070-23826217:-|nuORF REV__ENST00000380117.5_1_9:23826070-23826217:-|nuORF MSMS UPN48_class_I_Rep_1 5 588.2839965820312 2 588.285031 1174.55551 NaN NaN NaN NaN NaN NaN NaN 69.317 1 72.772 72.272 73.272 3.4548 0 0 0 0.53105 1 16072 16072 10.824 0.75 1 + 8292 22046 5059 5064 10363 10363 -0.024786004983525345 FLFPCSFCVL 10 Unmodified _FLFPCSFCVL_ 0 0 0 REV__ENST00000380117.5_1_9:23826070-23826217:-|nuORF REV__ENST00000380117.5_1_9:23826070-23826217:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 587.816162109375 2 588.285031 1174.55551 0.5679 0.00033409 -1.1654 -0.00068556 -0.59746 -0.00035148 588.2841695912947 69.186 0.49465 72.695 72.399 72.893 3.5094 46 35 2 0 0 0 0.84575 1 15887 15887 10.824 0.75 1 174550 + 8293 22046 5059 5064 10364 10364 -0.024786004983525345 FLFPMLLHS 9 Unmodified _FLFPMLLHS_ 0 0 0 REV__L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|78|3|anti-sense REV__L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|78|3|anti-sense MSMS UPN47_class_I_Rep_3 4 552.8012084960938 2 552.799163 1103.58377 NaN NaN NaN NaN NaN NaN NaN 61.989 1 65.156 64.656 65.656 3.1667 0 0 0 0.34056 1 14664 14664 8.5933 1.304 1 + 8294 26868 5060 5065 10365 10365 0.03612465473247539 FLFQEPRSI 9 Unmodified _FLFQEPRSI_ 0 0 0 nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR MULTI-MSMS UPN46_class_I_Rep_3 1 568.8095703125 2 568.808574 1135.60259 0.40992 0.00023317 1.0917 0.00062098 1.5016 0.00085415 568.8085762699791 66.14 0.36611 66.14 66.023 66.389 0 50 36 2 0 0 0 0.20317 1 15002 15002 20.415 7.883 1 140930 8295 4062 5061 5066 10366 10366 0.04021718368676375 FLFQYYDN 8 Unmodified _FLFQYYDN_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|12|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|29|3|sense;LTR13_dup239|chr10:48346122-48347150:+|1.503042440940924|0.0221802055141005|6.08|151.0|12|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|12|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|12|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 554.8223876953125 2 555.250557 1108.48656 0.38436 0.00021342 1.5129 0.00084004 1.8973 0.0010535 555.7516462208171 56.741 0.09964 59.913 59.847 59.947 3.1721 6 5 2 0 0 0 0.72333 1 13052 13052 2.5775 0 1 38884 8296 15560 5062 5067 10367 10367 -0.06334225202044763 FLFRLPEV 8 Unmodified _FLFRLPEV_ 0 0 0 ENST00000375436.8_1_1:17735434-17735650:-|nuORF ENST00000375436.8_1_1:17735434-17735650:-|nuORF ENST00000375436.8_1_1:17735434-17735650:-|nuORF MSMS UPN47_class_I_Rep_2 3 510.7960205078125 2 510.797478 1019.5804 NaN NaN NaN NaN NaN NaN NaN 32.483 1 35.938 35.438 36.438 3.4547 0 0 0 0.40625 1 5634 5634 2.3027 0.24298 1 8297 6443 5063 5068 10368 10368 0.07139538690887548 FLFVFMHFQSY 11 Unmodified _FLFVFMHFQSY_ 0 0 0 L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.5718078613281 3 489.237286 1464.69003 0.15614 7.6388E-05 -0.21378 -0.00010459 -0.057646 -2.8203E-05 489.23711230804895 43.679 1.2197 47.318 46.805 48.025 3.6385 125 85 2 0 0 0 0.67113 3 8079 8079;8124;8263 1.3296 0.82369 1 169290 8298 11352 5064 5069 10369;10370;10371 10369 -0.023728237520572293 FLFVFMHFQSY 11 Unmodified _FLFVFMHFQSY_ 0 0 0 L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense L1MC3_dup5086|chr6:144022850-144023768:+|1.031697469340306|0.0019904289704778|9.02|151.0|44|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 489.237286 1464.69003 0.15795 7.7273E-05 -0.40905 -0.00020012 -0.2511 -0.00012285 489.237062688761 43.912 0.054665 47.426 47.387 47.442 3.5132 0.053787 -0.00027807 NaN 1.3296 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 56511 8299 11352 5064 5069 -0.023728237520572293 FLFVKVRNT 9 Unmodified _FLFVKVRNT_ 0 0 0 REV__L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|323|3|anti-sense REV__L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|323|3|anti-sense MSMS UPN47_class_I_Rep_1 2 562.3345947265625 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.88 1 113.48 112.98 113.98 3.6046 0 0 0 0.39428 1 27108 27108 2.0598 0 1 + 8300 29542 5065 5070 10372 10372 0.09854301502286944 FLFVYRGE 8 Unmodified _FLFVYRGE_ 0 0 0 REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40 REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40 MSMS UPN47_class_I_Rep_2 3 515.7724609375 2 515.77146 1029.52837 NaN NaN NaN NaN NaN NaN NaN 17.749 1 21.136 20.636 21.636 3.387 0 0 0 0.40738 1 1383 1383 0.79363 0 1 + 8301 19381 5066 5071 10373 10373 0.014783752771336367 FLFWFMNY 8 Unmodified _FLFWFMNY_ 0 0 0 REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|32|2|anti-sense REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 584.2701416015625 2 584.270238 1166.52592 0.41849 0.00024451 -0.06331 -3.699E-05 0.35518 0.00020752 584.2701899457976 71.216 0.90736 74.506 74.114 75.021 3.2899 201 81 3 0 0 0 0.82752 1 17291 17291 13.508 2.3934 1 710010 + 8302 28202 5067 5072 10374 10374 -0.05067796452181028 FLFWFMNY 8 Unmodified _FLFWFMNY_ 0 0 0 REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|32|2|anti-sense REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|32|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 584.270238 1166.52592 0.35888 0.00020968 0.17928 0.00010475 0.53815 0.00031443 584.2702734750479 70.94 0.83409 74.311 73.949 74.783 3.3713 -0.093216 0.00013085 NaN 13.508 193 73 3 NaN NaN NaN NaN 0 NaN NaN 0 594180 + 8303 28202 5067 5072 -0.05067796452181028 FLFWFMNY 8 Unmodified _FLFWFMNY_ 0 0 0 REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|32|2|anti-sense REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|32|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 584.270238 1166.52592 0.45059 0.00026326 0.052884 3.0899E-05 0.50347 0.00029416 584.2702409569938 71.177 0.88976 74.396 74.054 74.944 3.2188 -0.0084491 -1.6843E-05 NaN 13.508 184 75 3 NaN NaN NaN NaN 0 NaN NaN 0 648700 + 8304 28202 5067 5072 -0.05067796452181028 FLFYFMYI 8 Unmodified _FLFYFMYI_ 0 0 0 REV__HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|51|1|sense REV__HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|51|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 572.265380859375 2 572.282815 1142.55108 0.27816 0.00015918 4.4024 0.0025194 4.6805 0.0026786 572.7880599925784 46.587 0.15512 49.939 49.838 49.993 3.3515 10 8 2 0 0 0 0.72333 1 9940 9940 6.3541 0 1 52425 + 8305 23899 5068 5073 10375 10375 -0.014497416495942161 FLGHFSMKF 9 Unmodified _FLGHFSMKF_ 0 0 0 REV__L1MC4_dup5008|chr3:123222496-123223061:-|1.8679052340207103|0.0808559912146953|4.53|151.0|20|3|sense REV__L1MC4_dup5008|chr3:123222496-123223061:-|1.8679052340207103|0.0808559912146953|4.53|151.0|20|3|sense MSMS UPN48_class_I_Rep_1 5 557.281494140625 2 557.281137 1112.54772 NaN NaN NaN NaN NaN NaN NaN 39.28 1 42.784 42.284 43.284 3.5048 0 0 0 0.39518 1 6916 6916 1.8442 0 1 + 8306 26920 5069 5074 10376 10376 -0.004049917035899853 FLGLSHLSYY 10 Unmodified _FLGLSHLSYY_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense MSMS UPN47_class_I_Rep_2 3 600.3082275390625 2 600.308406 1198.60226 NaN NaN NaN NaN NaN NaN NaN 46.312 1 49.664 49.164 50.164 3.3515 0 0 0 0.53105 1 9840 9840 6.2058 0.47393 1 + 8307 24053 5070 5075 10377 10377 0.010902986488190436 FLGPEKKHN 9 Unmodified _FLGPEKKHN_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP UPN48_class_I_Rep_3 7 534.8098754882812 2 535.293091 1068.57163 0.45063 0.00024122 -0.057471 -3.0764E-05 0.39316 0.00021046 535.293115313615 35.513 0.58104 39.185 38.912 39.493 3.6721 96 59 2 0 0 0 0.11021 1 5711 5711 14.838 1.3304 1 173420 + 8308 18023 5071 5076 10378 10378 0.04008565054414248 FLGPEKKHN 9 Unmodified _FLGPEKKHN_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MATCH UPN48_class_I_Rep_2 6 2 535.293091 1068.57163 0.42482 0.0002274 -0.16624 -8.8987E-05 0.25858 0.00013842 535.293067323823 35.474 0.64102 39.161 38.952 39.593 3.6877 -0.011995 -6.0714E-05 NaN 14.838 89 61 2 NaN NaN NaN NaN 0 NaN NaN 0 161480 + 8309 18023 5071 5076 0.04008565054414248 FLGPLFYIGPC 11 Unmodified _FLGPLFYIGPC_ 0 0 0 REV__L1M4a2_dup952|chr8:73512753-73514112:-|1.8879649437075283|0.0378498184509501|5.64|151.0|95|3|anti-sense REV__L1M4a2_dup952|chr8:73512753-73514112:-|1.8879649437075283|0.0378498184509501|5.64|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_1 5 613.816162109375 2 613.817553 1225.62055 NaN NaN NaN NaN NaN NaN NaN 71.125 1 74.591 74.091 75.091 3.466 0 0 0 0.38417 1 16608 16608 3.5965 0.31518 1 + 8310 24526 5072 5077 10379 10379 0.016767172991649204 FLGSFLYEY 9 Unmodified _FLGSFLYEY_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MSMS UPN47_class_I_Rep_3 4 569.7744140625 2 569.776408 1137.53826 NaN NaN NaN NaN NaN NaN NaN 50.774 1 53.99 53.49 54.49 3.2163 0 0 0 0.29868 1 11246 11246 10.824 3.5347 1 + 8311 634 5073 5078 10380 10380 -0.025004815081501874 FLGTIPKH 8 Unmodified _FLGTIPKH_ 0 0 0 L1MC2_dup512|chr2:32123273-32125206:+|1.252688891571788|0.0355894059835579|5.14|151.0|10|1|sense L1MC2_dup512|chr2:32123273-32125206:+|1.252688891571788|0.0355894059835579|5.14|151.0|10|1|sense L1MC2_dup512|chr2:32123273-32125206:+|1.252688891571788|0.0355894059835579|5.14|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 456.7679138183594 2 456.76872 911.522887 0.16957 7.7456E-05 -1.061 -0.00048465 -0.89146 -0.00040719 456.768015144392 100.46 0.17753 104.2 104.15 104.33 3.7417 34 23 2 0 0 0 0.82752 1 23855 23855 2.5775 2.5775 1 121510 8312 11270 5074 5079 10381 10381 0.06358696485324344 FLHCDKVNQQ 10 Unmodified _FLHCDKVNQQ_ 0 0 0 REV__L1P3_dup3072|chr16:47552833-47554975:-|2.498329520964275|0.0574024130880286|5.44|151.0|88|2|anti-sense REV__L1P3_dup3072|chr16:47552833-47554975:-|2.498329520964275|0.0574024130880286|5.44|151.0|88|2|anti-sense MSMS UPN47_class_I_Rep_3 4 616.2959594726562 2 616.298047 1230.58154 NaN NaN NaN NaN NaN NaN NaN 54.561 1 57.747 57.247 58.247 3.1856 0 0 0 0.53105 1 12399 12399 3.2813 1.2216 1 + 8313 28894 5075 5080 10382 10382 -0.024526150024939852 FLHEGDNII 9 Unmodified _FLHEGDNII_ 0 0 0 REV__L1MB7_dup9628|chr8:27337436-27338197:-|2.652834709597068|0.0187453180116665|7.14|151.0|36|2|anti-sense REV__L1MB7_dup9628|chr8:27337436-27338197:-|2.652834709597068|0.0187453180116665|7.14|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.2694091796875 2 529.269281 1056.52401 0.35509 0.00018794 -0.030355 -1.6066E-05 0.32473 0.00017187 529.269163671314 61.403 1.2208 64.785 64.526 65.747 3.3815 212 89 4 0 0 0 0.10817 3 14498 14333;14498;14541 32.305 4.9457 1 1144700 + 8314 26327 5076 5081 10383;10384;10385 10384 -0.0019913393641672883 FLHEGDNII 9 Unmodified _FLHEGDNII_ 0 0 0 REV__L1MB7_dup9628|chr8:27337436-27338197:-|2.652834709597068|0.0187453180116665|7.14|151.0|36|2|anti-sense REV__L1MB7_dup9628|chr8:27337436-27338197:-|2.652834709597068|0.0187453180116665|7.14|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.2701416015625 2 529.269281 1056.52401 0.21724 0.00011498 0.11134 5.8931E-05 0.32858 0.00017391 529.2692112334264 61.822 1.4009 65.081 64.641 66.042 3.2594 224 90 4 0 0 0 0.37599 1 14739 14739 9.3831 9.3831 1 1147500 + 8315 26327 5076 5081 10386 10386 -0.0019913393641672883 FLHEGDNII 9 Unmodified _FLHEGDNII_ 0 0 0 REV__L1MB7_dup9628|chr8:27337436-27338197:-|2.652834709597068|0.0187453180116665|7.14|151.0|36|2|anti-sense REV__L1MB7_dup9628|chr8:27337436-27338197:-|2.652834709597068|0.0187453180116665|7.14|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.2691650390625 2 529.269281 1056.52401 0.32746 0.00017331 0.014032 7.4265E-06 0.34149 0.00018074 529.2691620058732 61.781 1.3034 64.948 64.598 65.902 3.1667 236 89 4 0 0 0 0.21527 1 14755 14755 19.257 4.4187 1 1039600 + 8316 26327 5076 5081 10387 10387 -0.0019913393641672883 FLHFLQLRKER 11 Unmodified _FLHFLQLRKER_ 0 0 0 REV__ENSG00000144035|ENST00000272425|NAT8 REV__ENSG00000144035|ENST00000272425|NAT8 MULTI-SECPEP UPN46_class_I_Rep_3 1 495.95849609375 3 496.292894 1485.85685 0.30676 0.00015224 0.8658 0.00042969 1.1726 0.00058193 496.29337175466424 98.912 0.098267 98.912 98.84 98.938 0 12 10 2 0 0 0 22.551 1 24084 24084 0.094841 0 1 114950 + 8317 19474 5077 5082 10388 10388 0.13335785187814508 FLHFLQLRKER 11 Unmodified _FLHFLQLRKER_ 0 0 0 REV__ENSG00000144035|ENST00000272425|NAT8 REV__ENSG00000144035|ENST00000272425|NAT8 MULTI-MATCH UPN47_class_I_Rep_1 2 3 496.292894 1485.85685 0.27958 0.00013875 -0.97558 -0.00048417 -0.696 -0.00034542 496.29232356336416 95.425 0.037918 99.19 99.162 99.2 3.7648 0.15973 -0.0026044 NaN 0.094841 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 54881 + 8318 19474 5077 5082 0.13335785187814508 FLHFLQLRKER 11 Unmodified _FLHFLQLRKER_ 0 0 0 REV__ENSG00000144035|ENST00000272425|NAT8 REV__ENSG00000144035|ENST00000272425|NAT8 MULTI-MATCH UPN48_class_I_Rep_2 6 3 496.292894 1485.85685 0.2793 0.00013862 0.87537 0.00043444 1.1547 0.00057306 496.29327558558543 95.208 0.077049 98.989 98.924 99.001 3.7804 -0.04136 0.00015147 NaN 0.094841 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 157760 + 8319 19474 5077 5082 0.13335785187814508 FLHFRRTN 8 Unmodified _FLHFRRTN_ 0 0 0 HAL1_dup2570|chr2:68170770-68171393:-|1.324014604374787|0.1117841765634893|3.57|151.0|43|3|anti-sense HAL1_dup2570|chr2:68170770-68171393:-|1.324014604374787|0.1117841765634893|3.57|151.0|43|3|anti-sense HAL1_dup2570|chr2:68170770-68171393:-|1.324014604374787|0.1117841765634893|3.57|151.0|43|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 546.255859375 2 545.798875 1089.5832 0.51986 0.00028374 -1.3273 -0.00072442 -0.80741 -0.00044068 545.7980442719181 52.398 0.3676 56.037 55.826 56.193 3.639 36 31 2 0 0 0 0.72333 1 10891 10891 11.64 11.64 1 88225 8320 7876 5078 5083 10389 10389 0.04198806868407701 FLHFRRTN 8 Unmodified _FLHFRRTN_ 0 0 0 HAL1_dup2570|chr2:68170770-68171393:-|1.324014604374787|0.1117841765634893|3.57|151.0|43|3|anti-sense HAL1_dup2570|chr2:68170770-68171393:-|1.324014604374787|0.1117841765634893|3.57|151.0|43|3|anti-sense HAL1_dup2570|chr2:68170770-68171393:-|1.324014604374787|0.1117841765634893|3.57|151.0|43|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 545.798875 1089.5832 0.29877 0.00016307 -1.5829 -0.00086397 -1.2842 -0.0007009 546.2986905101443 56.242 0.054382 56.242 56.198 56.253 0 0.10207 -0.00027589 NaN 11.64 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 182070 8321 7876 5078 5083 0.04198806868407701 FLHFYCYP 8 Unmodified _FLHFYCYP_ 0 0 0 REV__L1M4c_dup2924|chr14:102702631-102703662:+|1.303239965205952|0.0641282680620808|4.34|151.0|57|2|anti-sense REV__L1M4c_dup2924|chr14:102702631-102703662:+|1.303239965205952|0.0641282680620808|4.34|151.0|57|2|anti-sense MSMS UPN48_class_I_Rep_2 6 545.24658203125 2 545.246763 1088.47897 NaN NaN NaN NaN NaN NaN NaN 115.09 1 118.75 118.25 119.25 3.6616 0 0 0 0.40738 1 27536 27536 0.79363 0 1 + 8322 24592 5079 5084 10390 10390 -0.06172656003332122 FLHGNQEDTN 10 Unmodified _FLHGNQEDTN_ 0 0 0 REV__Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|131|3|anti-sense REV__Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|131|3|anti-sense MSMS UPN47_class_I_Rep_2 3 587.759033203125 2 587.759809 1173.50507 NaN NaN NaN NaN NaN NaN NaN 38.193 1 41.581 41.081 42.081 3.3879 0 0 0 0.53105 1 7369 7369 1.3295 0 1 + 8323 32176 5080 5085 10391 10391 -0.07474715298144474 FLHHKPYSC 9 Unmodified _FLHHKPYSC_ 0 0 0 REV__L1ME3E_dup3967|chr16:75014202-75015301:-|2.114578391707808|0.0139923677700949|7.24|151.0|54|2|anti-sense REV__L1ME3E_dup3967|chr16:75014202-75015301:-|2.114578391707808|0.0139923677700949|7.24|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.7764892578125 2 566.273844 1130.53313 0.077999 4.4169E-05 1.3916 0.00078802 1.4696 0.00083219 566.7766466366959 44.488 0.97787 48.183 47.837 48.815 3.6951 202 67 4 0 0 0 0.46869 1 9346 9346 3.9444 2.2918 1 326880 + 8324 28162 5081 5086 10392 10392 -0.026910638517392726 FLHHKPYSC 9 Unmodified _FLHHKPYSC_ 0 0 0 REV__L1ME3E_dup3967|chr16:75014202-75015301:-|2.114578391707808|0.0139923677700949|7.24|151.0|54|2|anti-sense REV__L1ME3E_dup3967|chr16:75014202-75015301:-|2.114578391707808|0.0139923677700949|7.24|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.7772216796875 2 566.273844 1130.53313 0.22293 0.00012624 0.68304 0.00038679 0.90598 0.00051303 566.7764552655209 45 1.3025 48.244 47.786 49.089 3.2441 231 82 5 0 0 0 0.46869 4 9449 9449;9519;9555;9565 3.9444 3.9444 1 231580 + 8325 28162 5081 5086 10393;10394;10395;10396 10393 -0.026910638517392726 FLHHSYPW 8 Unmodified _FLHHSYPW_ 0 0 0 REV__ENST00000505464.1_1_5:5437704-5437824:+|nuORF REV__ENST00000505464.1_1_5:5437704-5437824:+|nuORF MSMS UPN47_class_I_Rep_3 4 543.7453002929688 2 543.761426 1085.5083 NaN NaN NaN NaN NaN NaN NaN 37.425 1 40.672 40.172 41.172 3.247 0 0 0 0.40738 1 7175 7175 0.79363 0 1 + 8326 22713 5082 5087 10397 10397 -0.03103375662817598 FLHLHLRY 8 Unmodified _FLHLHLRY_ 0 0 0 L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense;L1PA2_dup200|chr1:169251562-169257591:-|1.8958925897494048|0.0595535827587582|4.99|151.0|3|1|sense L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense MSMS UPN48_class_I_Rep_3 7 549.3475952148438 2 549.813993 1097.61343 NaN NaN NaN NaN NaN NaN NaN 50.641 1 54.262 53.762 54.762 3.621 0 0 0 0.40404 1 10296 10296 5.2307 0.47466 1 8327 14284 5083 5088 10398 10398 0.06853165533584615 FLHPPSLSEA 10 Unmodified _FLHPPSLSEA_ 0 0 0 nc|ENSG00000124440|Q9Y2N7-6|HIF3A;nc|ENSG00000124440|Q9Y2N7-7|HIF3A;nc|ENSG00000124440|Q9Y2N7-5|HIF3A;nc|ENSG00000124440|Q9Y2N7-3|HIF3A;ENST00000244302.8_1_19:46800333-46834596:+|nuORF;nc|ENSG00000124440|Q9Y2N7-2|HIF3A;ENSG00000124440|ENST00000377670|HIF3A nc|ENSG00000124440|Q9Y2N7-6|HIF3A nc|ENSG00000124440|Q9Y2N7-6|HIF3A MULTI-MSMS UPN47_class_I_Rep_2 3 549.284423828125 2 549.284931 1096.55531 0.48604 0.00026697 -1.4966 -0.00082205 -1.0105 -0.00055507 549.2843393414512 59.607 0.73765 62.88 62.545 63.283 3.2731 76 47 2 0 0 0 0.33585 1 13915 13915 25.399 2.663 1 290590 8328 2467 5084 5089 10399 10399 0.010894390977000512 FLHPYYFI 8 Unmodified _FLHPYYFI_ 0 0 0 ENST00000568219.5_2_16:23641352-23641448:-|nuORF ENST00000568219.5_2_16:23641352-23641448:-|nuORF ENST00000568219.5_2_16:23641352-23641448:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 550.34033203125 2 550.284203 1098.55385 0.44201 0.00024323 -1.6878 -0.00092879 -1.2458 -0.00068556 550.2832343489582 60.606 0.095276 63.987 63.968 64.063 3.3815 15 8 2 0 0 0 0.72333 1 14153 14153 17.087 2.5049 1 81904 8329 7500 5085 5090 10400 10400 0.008518497995510188 FLHPYYFI 8 Unmodified _FLHPYYFI_ 0 0 0 ENST00000568219.5_2_16:23641352-23641448:-|nuORF ENST00000568219.5_2_16:23641352-23641448:-|nuORF ENST00000568219.5_2_16:23641352-23641448:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 549.72607421875 2 550.284203 1098.55385 0.44382 0.00024423 -1.4554 -0.00080089 -1.0116 -0.00055666 550.2833595386941 60.537 0.32342 63.918 63.644 63.968 3.3815 54 31 2 0 0 0 0.72333 1 14123 14123 17.087 2.5049 1 96812 8330 7500 5085 5090 10401 10401 0.008518497995510188 FLHPYYFI 8 Unmodified _FLHPYYFI_ 0 0 0 ENST00000568219.5_2_16:23641352-23641448:-|nuORF ENST00000568219.5_2_16:23641352-23641448:-|nuORF ENST00000568219.5_2_16:23641352-23641448:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 550.284203 1098.55385 0.46007 0.00025317 -2.7509 -0.0015138 -2.2908 -0.0012606 550.784161974729 60.916 0.51356 64.181 63.92 64.434 3.2654 0.096907 -0.00030112 NaN 17.087 62 50 2 NaN NaN NaN NaN 0 NaN NaN 0 125890 8331 7500 5085 5090 0.008518497995510188 FLHQRPYPT 9 Unmodified _FLHQRPYPT_ 0 0 0 REV__L1PB1_dup11012|chr14:50315690-50317486:-|1.399843637465695|0.2173220557588792|2.69|151.0|68|1|anti-sense REV__L1PB1_dup11012|chr14:50315690-50317486:-|1.399843637465695|0.2173220557588792|2.69|151.0|68|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.806640625 2 579.806365 1157.59818 0.42641 0.00024724 -0.063855 -3.7024E-05 0.36256 0.00021021 579.8062955945655 40.177 1.5158 43.918 43.43 44.946 3.7413 387 154 3 0 0 0 0.33654 1 7356 7356 11.64 4.9171 1 1148200 + 8332 30302 5086 5091 10402 10402 0.025682539457193343 FLHRSYYF 8 Unmodified _FLHRSYYF_ 0 0 0 L1M5_dup43222|chr14:50454722-50455361:+|1.075369459109076|0.1728116855818775|2.64|151.0|34|1|anti-sense L1M5_dup43222|chr14:50454722-50455361:+|1.075369459109076|0.1728116855818775|2.64|151.0|34|1|anti-sense L1M5_dup43222|chr14:50454722-50455361:+|1.075369459109076|0.1728116855818775|2.64|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_3 4 566.7821044921875 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 79.115 1 82.41 81.91 82.91 3.295 0 0 0 0.40472 1 19757 19757 4.3292 0 1 8333 9171 5087 5092 10403 10403 -0.010348199743020814 FLHSQFFSPSA 11 Unmodified _FLHSQFFSPSA_ 0 0 0 L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|161|3|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|161|3|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|161|3|anti-sense MSMS UPN47_class_I_Rep_3 4 634.3106079101562 2 634.308938 1266.60332 NaN NaN NaN NaN NaN NaN NaN 67.223 1 70.414 69.914 70.914 3.1914 0 0 0 0.38417 1 16264 16264 2.4985 0 1 8334 10254 5088 5093 10404 10404 -0.01931486982266506 FLHVLAKPLK 10 Unmodified _FLHVLAKPLK_ 0 0 0 Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_3 4 583.3773193359375 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 48.34 1 51.581 51.081 52.081 3.2405 0 0 0 0.53105 1 10501 10501 0.40072 0 1 8335 443 5089 5094 10405 10405 0.16252037950107479 FLHVNFRN 8 Unmodified _FLHVNFRN_ 0 0 0 L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|297|1|anti-sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|297|1|anti-sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|297|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.260009765625 2 523.780151 1045.54575 0.30356 0.000159 -1.2291 -0.0006438 -0.92559 -0.00048481 523.7794415231515 73.428 0.070404 76.814 76.774 76.844 3.3861 6 4 2 0 0 0 0.82752 1 18035 18035 0.79363 0 1 26174 8336 15248 5090 5095 10406 10406 0.024797156027943856 FLIADRFPS 9 Unmodified _FLIADRFPS_ 0 0 0 REV__HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|245|3|anti-sense REV__HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|245|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 533.30908203125 2 533.290017 1064.56548 0.33099 0.00017651 0.32683 0.00017429 0.65782 0.00035081 533.290057618371 61.926 0.45558 65.186 64.966 65.422 3.2594 46 30 3 0 0 0 0.33654 1 14603 14603 11.64 0.81637 1 75329 + 8337 23870 5091 5096 10407 10407 0.03578046822894976 FLIAKITT 8 Unmodified _FLIAKITT_ 0 0 0 MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|44|3|anti-sense MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|44|3|anti-sense MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|44|3|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7852783203125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 45.43 1 48.783 48.283 49.283 3.3534 0 0 0 0.40738 1 9572 9572 0.79363 0 1 8338 15982 5092 5097 10408 10408 0.10204733942305211 FLIAKITT 8 Unmodified _FLIAKITT_ 0 0 0 MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|44|3|anti-sense MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|44|3|anti-sense MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|44|3|anti-sense MSMS UPN47_class_I_Rep_3 4 453.78485107421875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 44.234 1 47.478 46.978 47.978 3.2441 0 0 0 0.40738 1 9257 9257 0.79363 0 1 8339 15982 5092 5097 10409 10409 0.10204733942305211 FLICVEMFI 9 Unmodified _FLICVEMFI_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|273|2|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|273|2|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|273|2|anti-sense MSMS UPN47_class_I_Rep_3 4 557.7862548828125 2 557.787407 1113.56026 NaN NaN NaN NaN NaN NaN NaN 77.552 1 80.821 80.321 81.321 3.269 0 0 0 0.36505 1 19317 19317 7.2892 0.93513 1 8340 14448 5093 5098 10410 10410 0.008022836444297354 FLIDWYLM 8 Unmodified _FLIDWYLM_ 0 0 0 REV__Cheshire_dup547|chr9:33846309-33846831:-|1.3193530462621648|0.0096495483324918|7.1|151.0|8|2|sense REV__Cheshire_dup547|chr9:33846309-33846831:-|1.3193530462621648|0.0096495483324918|7.1|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7806396484375 2 550.777896 1099.54124 0.48386 0.0002665 2.8412 0.0015648 3.325 0.0018313 550.779238355596 51.432 0.54761 54.771 54.332 54.88 3.3386 31 27 2 0 0 0 0.72333 1 11402 11402 2.5775 0.27475 1 76357 + 8341 17413 5094 5099 10411 10411 -0.0045492965500670834 FLIDYSHLY 9 Unmodified _FLIDYSHLY_ 0 0 0 L1MB8_dup6707|chr7:116912290-116913416:-|1.6343162508074986|0.3874886872875023|2.08|151.0|66|2|anti-sense L1MB8_dup6707|chr7:116912290-116913416:-|1.6343162508074986|0.3874886872875023|2.08|151.0|66|2|anti-sense L1MB8_dup6707|chr7:116912290-116913416:-|1.6343162508074986|0.3874886872875023|2.08|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 585.794189453125 2 585.795132 1169.57571 NaN NaN NaN NaN NaN NaN NaN 59.209 1 59.209 58.709 59.709 0 0 0 0 0.2088 1 13076 13076 15.847 2.2323 1 8342 11026 5095 5100 10412 10412 -0.0022939024252082163 FLIFYYFLRR 10 Unmodified _FLIFYYFLRR_ 0 0 0 AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|13|1|anti-sense AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|13|1|anti-sense AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_1 5 479.9389953613281 3 479.939569 1436.79688 NaN NaN NaN NaN NaN NaN NaN 13.43 1 16.943 16.443 17.443 3.5133 0 0 0 0.53105 1 242 242 0.15932 0 1 8343 252 5096 5101 10413 10413 0.09595094524570413 FLIFYYFLRR 10 Unmodified _FLIFYYFLRR_ 0 0 0 AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|13|1|anti-sense AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|13|1|anti-sense AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_3 7 479.9391784667969 3 479.939569 1436.79688 NaN NaN NaN NaN NaN NaN NaN 12.935 1 16.466 15.966 16.966 3.5314 0 0 0 0.53105 1 163 163 0.15932 0 1 8344 252 5096 5101 10414 10414 0.09595094524570413 FLIGPGAPSYL 11 Unmodified _FLIGPGAPSYL_ 0 0 0 MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|11|2|sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|11|2|sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.8133544921875 2 567.813325 1133.6121 0.46149 0.00026204 -0.24058 -0.0001366 0.22091 0.00012543 567.8132079672781 76.561 0.23273 79.818 79.773 80.006 3.2573 27 23 2 0 0 0 0.4608 1 19057 19057 8.7454 0 1 59126 8345 15957 5097 5102 10415 10415 0.050634866541713563 FLIGPGAPSYL 11 Unmodified _FLIGPGAPSYL_ 0 0 0 MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|11|2|sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|11|2|sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|11|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 567.813325 1133.6121 0.46472 0.00026388 0.42322 0.00024031 0.88794 0.00050418 567.8135043298361 76.13 0.049881 79.451 79.415 79.464 3.3216 -0.1834 0.0004798 NaN 8.7454 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 44534 8346 15957 5097 5102 0.050634866541713563 FLIHICIY 8 Unmodified _FLIHICIY_ 0 0 0 REV__L1MA6_dup4857|chr16:47353218-47355674:+|1.3173458351209548|0.0194695259066352|6.08|151.0|161|3|anti-sense REV__L1MA6_dup4857|chr16:47353218-47355674:+|1.3173458351209548|0.0194695259066352|6.08|151.0|161|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2793273925781 2 511.280606 1020.54666 0.34905 0.00017846 -1.3622 -0.00069648 -1.0132 -0.00051802 511.2797352018934 27.698 0.078985 31.329 31.308 31.387 3.6311 12 8 2 0 0 0 0.82752 1 3716 3716 2.8892 0 1 37913 + 8347 25472 5098 5103 10416 10416 0.037207939274708224 FLILSPLTPL 10 Unmodified _FLILSPLTPL_ 0 0 0 REV__ENST00000438101.1_1_X:49431298-49432372:-|nuORF REV__ENST00000438101.1_1_X:49431298-49432372:-|nuORF MSMS UPN46_class_I_Rep_3 1 557.3380126953125 2 557.349543 1112.68453 NaN NaN NaN NaN NaN NaN NaN 108.07 1 108.07 107.57 108.57 0 0 0 0 0.53105 1 26393 26393 9.3831 2.66 1 + 8348 22316 5099 5104 10417 10417 0.13269820727759907 FLIMATLGGV 10 Unmodified _FLIMATLGGV_ 0 0 0 L1PB1_dup446|chr1:150395809-150396658:-|1.481918468454015|0.0144717738135874|6.68|151.0|46|2|anti-sense L1PB1_dup446|chr1:150395809-150396658:-|1.481918468454015|0.0144717738135874|6.68|151.0|46|2|anti-sense L1PB1_dup446|chr1:150395809-150396658:-|1.481918468454015|0.0144717738135874|6.68|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_2 6 511.2904968261719 2 511.291171 1020.56779 NaN NaN NaN NaN NaN NaN NaN 79.411 1 83.044 82.544 83.544 3.6331 0 0 0 0.53105 1 18864 18864 3.9444 0.3479 1 8349 15116 5100 5105 10418 10418 0.05832759236363927 FLINRRVFH 9 Unmodified _FLINRRVFH_ 0 0 0 REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF REV__ENST00000338779.10_1_16:70695390-70695915:-|nuORF MSMS UPN48_class_I_Rep_2 6 601.352294921875 2 601.351274 1200.688 NaN NaN NaN NaN NaN NaN NaN 72.512 1 76.077 75.577 76.577 3.5645 0 0 0 0.4007 1 16974 16974 0.52476 0 1 + 8350 21807 5101 5106 10419 10419 0.0956792834499538 FLIRESETL 9 Unmodified _FLIRESETL_ 0 0 0 ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|5|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|3|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|6|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|7|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|1|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|8|intron;nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|9|intron;ENSG00000254087|ENST00000519728|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|4|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|1|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 554.305908203125 2 554.305864 1106.59717 0.32748 0.00018152 -0.37788 -0.00020946 -0.050398 -2.7936E-05 554.3055778823992 52.668 0.80242 56.226 56 56.802 3.5585 83 47 2 0 0 0 0.053261 5 11723 11679;11723;11765;11807;11850 47.594 13.193 1 303180 8351 5751 5102 5107 10420;10421;10422;10423;10424 10421 0.04813994786195508 FLIRESETL 9 Unmodified _FLIRESETL_ 0 0 0 ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|5|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|3|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|6|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|7|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|1|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|8|intron;nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|9|intron;ENSG00000254087|ENST00000519728|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|4|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|1|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 554.3056640625 2 554.305864 1106.59717 0.51454 0.00028521 -0.41745 -0.00023139 0.097088 5.3817E-05 554.3055064972921 53.013 1.1008 56.339 56.031 57.132 3.3266 116 71 3 0 0 0 0.033731 4 11862 11818;11862;11905;11946 55.503 21.101 1 278330 8352 5751 5102 5107 10425;10426;10427;10428 10426 0.04813994786195508 FLIRESETL 9 Unmodified _FLIRESETL_ 0 0 0 ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|5|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|3|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|6|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|7|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|1|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|8|intron;nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|9|intron;ENSG00000254087|ENST00000519728|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|4|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|1|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron MULTI-MSMS UPN47_class_I_Rep_3 4 554.807861328125 2 554.305864 1106.59717 0.48653 0.00026969 -0.23754 -0.00013167 0.249 0.00013802 554.3055902104691 53.149 0.77464 56.344 56.101 56.876 3.1948 101 44 3 0 0 0 0.019142 6 11958 11909;11916;11958;12003;12051;12118 63.961 22.121 1 230660 8353 5751 5102 5107 10429;10430;10431;10432;10433;10434 10431 0.04813994786195508 FLISRNTYY 9 Unmodified _FLISRNTYY_ 0 0 0 REV__L1MB7_dup12292|chrX:74225763-74226667:+|8.52327501848949|0.1587726580678805|5.75|151.0|45|1|anti-sense REV__L1MB7_dup12292|chrX:74225763-74226667:+|8.52327501848949|0.1587726580678805|5.75|151.0|45|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.3082885742188 2 588.806031 1175.59751 0.51822 0.00030513 -0.13415 -7.8986E-05 0.38407 0.00022614 588.8059413147773 56.19 0.64896 59.491 59.237 59.886 3.3009 68 37 2 0 0 0 0.42249 1 12946 12946 6.7232 1.9672 1 173370 + 8354 26129 5103 5108 10435 10435 0.01673414506035442 FLKDLVASV 9 Unmodified _FLKDLVASV_ 0 0 0 ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1 ENST00000530791.5_1_11:65687742-65688356:+|nuORF ENST00000530791.5_1_11:65687742-65688356:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.2950134277344 2 496.294768 990.574983 0.17899 8.8834E-05 0.16893 8.3837E-05 0.34792 0.00017267 496.2947731715381 61.334 0.64304 64.716 64.377 65.02 3.3815 83 45 3 0 0 0 0.14216 2 14394 14349;14394 26.268 3.3752 1 193530 8355 4731 5104 5109 10436;10437 10437 0.07931815108429419 FLKDLVASV 9 Unmodified _FLKDLVASV_ 0 0 0 ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1 ENST00000530791.5_1_11:65687742-65688356:+|nuORF ENST00000530791.5_1_11:65687742-65688356:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 496.29486083984375 2 496.294768 990.574983 0.26656 0.00013229 0.031038 1.5404E-05 0.2976 0.0001477 496.2947032677399 61.805 0.67448 65.064 64.552 65.226 3.2594 69 41 2 0 0 0 0.33908 1 14490 14490 11.495 0 1 148180 8356 4731 5104 5109 10438 10438 0.07931815108429419 FLKDLVASV 9 Unmodified _FLKDLVASV_ 0 0 0 ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1 ENST00000530791.5_1_11:65687742-65688356:+|nuORF ENST00000530791.5_1_11:65687742-65688356:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 496.29498291015625 2 496.294768 990.574983 0.16683 8.2797E-05 -0.050214 -2.4921E-05 0.11662 5.7876E-05 496.29456931245085 61.615 0.53011 64.782 64.556 65.086 3.1667 53 38 2 0 0 0 0.22932 2 14523 14523;14562 18.373 3.1246 1 146790 8357 4731 5104 5109 10439;10440 10439 0.07931815108429419 FLKFAYIK 8 Unmodified _FLKFAYIK_ 0 0 0 L1MC3_dup8734|chr11:46836867-46838220:+|1.382227064463914|0.0078991853504601|7.45|150.0|94|3|anti-sense L1MC3_dup8734|chr11:46836867-46838220:+|1.382227064463914|0.0078991853504601|7.45|150.0|94|3|anti-sense L1MC3_dup8734|chr11:46836867-46838220:+|1.382227064463914|0.0078991853504601|7.45|150.0|94|3|anti-sense MSMS UPN48_class_I_Rep_3 7 515.3096313476562 2 515.310221 1028.60589 NaN NaN NaN NaN NaN NaN NaN 89.557 1 93.387 92.887 93.887 3.8293 0 0 0 0.40746 1 21263 21263 0.69038 0 1 8358 11383 5105 5110 10441 10441 0.09273013213305603 FLKFWVLH 8 Unmodified _FLKFWVLH_ 0 0 0 L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|123|3|anti-sense L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|123|3|anti-sense L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|123|3|anti-sense MSMS UPN48_class_I_Rep_2 6 545.3175048828125 2 545.315838 1088.61712 NaN NaN NaN NaN NaN NaN NaN 78.351 1 81.973 81.473 82.473 3.6222 0 0 0 0.40581 1 18585 18585 2.8892 0 1 8359 13664 5106 5111 10442 10442 0.07635835307473826 FLKGKIFLK 9 Unmodified _FLKGKIFLK_ 0 0 0 L1ME4a_dup25215|chr12:104476351-104476759:-|2.764524251754442|0.0046014448470949|9.23|151.0|3|1|sense L1ME4a_dup25215|chr12:104476351-104476759:-|2.764524251754442|0.0046014448470949|9.23|151.0|3|1|sense L1ME4a_dup25215|chr12:104476351-104476759:-|2.764524251754442|0.0046014448470949|9.23|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 547.280517578125 2 547.360245 1092.70594 NaN NaN NaN NaN NaN NaN NaN 20.93 1 24.574 24.074 25.074 3.6436 0 0 0 0.4029 1 2189 2189 0 0 1 8360 12862 5107 5112 10443 10443 0.16329250547096308 FLKKEKRKLLF 11 Unmodified _FLKKEKRKLLF_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|15|1|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|15|1|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|15|1|sense MSMS UPN47_class_I_Rep_3 4 483.6464538574219 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 81.43 1 84.753 84.253 85.253 3.3231 0 0 0 0.38417 1 20378 20378 0.094841 0 1 8361 32977 5108 5113 10444 10444 0.216636010298771 FLKNLQAVL 9 Unmodified _FLKNLQAVL_ 0 0 0 L1MA3_dup1679|chr3:114912465-114916365:-|1.3770082651232698|0.0303336523933488|5.5|151.0|195|2|anti-sense L1MA3_dup1679|chr3:114912465-114916365:-|1.3770082651232698|0.0303336523933488|5.5|151.0|195|2|anti-sense L1MA3_dup1679|chr3:114912465-114916365:-|1.3770082651232698|0.0303336523933488|5.5|151.0|195|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 523.3238525390625 2 523.32386 1044.63317 0.41671 0.00021807 -0.60531 -0.00031677 -0.1886 -9.8697E-05 523.3234095536037 63.326 0.75021 66.784 66.381 67.131 3.4578 75 56 2 0 0 0 0.35081 1 14228 14228 10.824 0 1 140700 8362 9483 5109 5114 10445 10445 0.1126349675369056 FLKNQLAVN 9 Unmodified _FLKNQLAVN_ 0 0 0 L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|92|1|anti-sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|92|1|anti-sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|92|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.8037719726562 2 523.803291 1045.59203 0.44339 0.00023225 -0.61925 -0.00032437 -0.17586 -9.2115E-05 523.8029460897977 63.235 0.84325 66.744 66.299 67.142 3.5091 140 66 3 0 0 0 0.28552 1 14042 14042 14.838 0.93222 1 585850 8363 9897 5110 5115 10446 10446 0.07105735714230832 FLKQAFIF 8 Unmodified _FLKQAFIF_ 0 0 0 REV__L1PA16_dup11108|chr13:31660961-31662600:-|1.0113047358368834|0.0027903079548043|8.5|148.0|94|3|anti-sense REV__L1PA16_dup11108|chr13:31660961-31662600:-|1.0113047358368834|0.0027903079548043|8.5|148.0|94|3|anti-sense MSMS UPN47_class_I_Rep_2 3 507.2963562011719 2 507.294571 1012.57459 NaN NaN NaN NaN NaN NaN NaN 44.934 1 48.289 47.789 48.789 3.3556 0 0 0 0.39819 1 9420 9420 8.5933 2.8329 1 + 8364 29323 5111 5116 10447 10447 0.06880440179224934 FLKRSESFY 9 Unmodified _FLKRSESFY_ 0 0 0 REV__PABL_A-int_dup222|chrX:16727641-16728385:-|1.406231942703463|0.0094840875840079|7.21|151.0|18|3|sense REV__PABL_A-int_dup222|chrX:16727641-16728385:-|1.406231942703463|0.0094840875840079|7.21|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.8056640625 2 588.806031 1175.59751 0.40028 0.00023569 -0.066501 -3.9156E-05 0.33378 0.00019653 588.8059280994224 56.284 0.66354 59.456 59.224 59.888 3.1721 73 40 2 0 0 0 0.35081 1 12892 12892 10.824 0.75 1 168440 + 8365 32151 5112 5117 10448 10448 0.01673414506035442 FLKRSTKFIE 10 Unmodified _FLKRSTKFIE_ 0 0 0 L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|24|1|sense L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|24|1|sense L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|24|1|sense MSMS UPN46_class_I_Rep_3 1 423.58502197265625 3 423.583562 1267.72886 NaN NaN NaN NaN NaN NaN NaN 95.415 1 95.415 94.915 95.915 0 0 0 0 0.53105 1 23165 23165 1.7423 0.96574 1 8366 14452 5113 5118 10449 10449 0.1057022487393624 FLKVCPMF 8 Unmodified _FLKVCPMF_ 0 0 0 L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|156|2|anti-sense;L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|82|1|anti-sense L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|156|2|anti-sense L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|156|2|anti-sense MSMS UPN47_class_I_Rep_3 4 492.7575988769531 2 492.75591 983.497266 NaN NaN NaN NaN NaN NaN NaN 37.893 1 41.135 40.635 41.635 3.2414 0 0 0 0.40364 1 7317 7317 5.7604 1.0044 1 8367 15403 5114 5119 10450 10450 0.004857626470311516 FLKVWPSYLL 10 Unmodified _FLKVWPSYLL_ 0 0 0 REV__L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|229|1|anti-sense REV__L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|229|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 633.8712768554688 2 633.368267 1264.72198 0.52234 0.00033084 0.93857 0.00059446 1.4609 0.00092529 633.3687082329031 86.984 0.75296 90.621 90.231 90.984 3.6372 123 91 2 0 0 0 0.56433 1 21806 21806 0.45834 0 1 159350 + 8368 29228 5115 5120 10451 10451 0.10020911993365189 FLKWIYRSS 9 Unmodified _FLKWIYRSS_ 0 0 0 REV__ENST00000558999.5_1_15:90421504-90431799:-|nuORF REV__ENST00000558999.5_1_15:90421504-90431799:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 600.3338012695312 2 600.332216 1198.64988 0.5845 0.00035089 3.0902 0.0018551 3.6747 0.002206 600.3340940535398 89.163 0.086136 89.163 89.148 89.234 0 9 8 2 0 0 0 0.49026 1 21456 21456 1.6526 0.32309 1 69276 + 8369 23006 5116 5121 10452 10452 0.05849997639666071 FLLALEPEL 9 Unmodified _FLLALEPEL_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS UPN47_class_I_Rep_2 3 522.8024291992188 2 522.802426 1043.5903 0.19209 0.00010043 -0.005671 -2.9648E-06 0.18642 9.746E-05 522.8024515339404 91.241 0.31918 94.702 94.459 94.778 3.4613 59 42 2 0 0 0 0.10817 1 22598 22598 32.305 5.4218 1 179730 8370 4055 5117 5122 10453 10453 0.07024681905613761 FLLALEPEL 9 Unmodified _FLLALEPEL_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 522.802426 1043.5903 0.40498 0.00021172 -0.20121 -0.0001052 0.20376 0.00010653 522.8024015924412 91.06 0.29573 94.765 94.623 94.919 3.7053 0.031278 -0.00011341 NaN 32.305 61 39 2 NaN NaN NaN NaN 0 NaN NaN 0 148800 8371 4055 5117 5122 0.07024681905613761 FLLCFFPVF 9 Unmodified _FLLCFFPVF_ 0 0 0 L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|303|2|anti-sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|119|1|anti-sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|358|3|anti-sense;L1PA4_dup10379|chr14:54870365-54876505:+|1.7045771040594606|0.2311609675960485|2.88|151.0|301|2|anti-sense;L1PA3_dup3955|chr6:2064968-2070431:+|1.4686676283991853|0.0314840014374404|5.54|151.0|331|3|anti-sense;L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|218|3|anti-sense;L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|377|3|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense MSMS UPN48_class_I_Rep_1 5 566.7988891601562 2 566.798632 1131.58271 NaN NaN NaN NaN NaN NaN NaN 78.945 1 82.48 81.98 82.98 3.5352 0 0 0 0.39326 1 18827 18827 2.3027 0 1 8372 8479 5118 5123 10454 10454 0.02218251104341107 FLLCFFPVF 9 Unmodified _FLLCFFPVF_ 0 0 0 L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|303|2|anti-sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|119|1|anti-sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|358|3|anti-sense;L1PA4_dup10379|chr14:54870365-54876505:+|1.7045771040594606|0.2311609675960485|2.88|151.0|301|2|anti-sense;L1PA3_dup3955|chr6:2064968-2070431:+|1.4686676283991853|0.0314840014374404|5.54|151.0|331|3|anti-sense;L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|218|3|anti-sense;L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|377|3|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense MSMS UPN48_class_I_Rep_3 7 566.8009033203125 2 566.798632 1131.58271 NaN NaN NaN NaN NaN NaN NaN 78.252 1 81.874 81.374 82.374 3.6216 0 0 0 0.381 1 18518 18518 5.2307 0 1 8373 8479 5118 5123 10455 10455 0.02218251104341107 FLLCFFPVF 9 Unmodified _FLLCFFPVF_ 0 0 0 L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|303|2|anti-sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|119|1|anti-sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|358|3|anti-sense;L1PA4_dup10379|chr14:54870365-54876505:+|1.7045771040594606|0.2311609675960485|2.88|151.0|301|2|anti-sense;L1PA3_dup3955|chr6:2064968-2070431:+|1.4686676283991853|0.0314840014374404|5.54|151.0|331|3|anti-sense;L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|218|3|anti-sense;L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|377|3|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|239|1|anti-sense MSMS UPN48_class_I_Rep_3 7 566.7996215820312 2 566.798632 1131.58271 NaN NaN NaN NaN NaN NaN NaN 78.377 1 81.999 81.499 82.499 3.6216 0 0 0 0.381 1 18550 18550 5.2307 0 1 8374 8479 5118 5123 10456 10456 0.02218251104341107 FLLDGFPRTV 10 Unmodified _FLLDGFPRTV_ 0 0 0 ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2 ENST00000469238.1_1_1:33480014-33487286:-|nuORF ENST00000469238.1_1_1:33480014-33487286:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 582.825439453125 2 582.824224 1163.63389 0.36879 0.00021494 0.0092695 5.4025E-06 0.37805 0.00022034 582.8242398536994 73.064 0.433 76.444 76.162 76.595 3.3799 40 25 2 0 0 0 0.41414 1 17857 17857 18.373 9.6277 1 100930 8375 681 5119 5124 10457 10457 0.058622914027409934 FLLDGFPRTV 10 Unmodified _FLLDGFPRTV_ 0 0 0 ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2 ENST00000469238.1_1_1:33480014-33487286:-|nuORF ENST00000469238.1_1_1:33480014-33487286:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 583.2488403320312 2 582.824224 1163.63389 0.43749 0.00025498 -0.45425 -0.00026475 -0.016765 -9.7709E-06 582.8240067307195 73.202 0.37521 76.5 76.367 76.743 3.2971 35 28 2 0 0 0 0.84575 1 17968 17968 22.658 22.658 1 77701 8376 681 5119 5124 10458 10458 0.058622914027409934 FLLDGFPRTV 10 Unmodified _FLLDGFPRTV_ 0 0 0 ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2 ENST00000469238.1_1_1:33480014-33487286:-|nuORF ENST00000469238.1_1_1:33480014-33487286:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 583.2492065429688 2 582.824224 1163.63389 0.4552 0.0002653 -0.24809 -0.00014459 0.20712 0.00012071 583.3256409345046 73.235 0.30103 76.462 76.245 76.546 3.2271 31 24 2 0 0 0 0.84575 1 18099 18099 28.495 14.588 1 70924 8377 681 5119 5124 10459 10459 0.058622914027409934 FLLDKKIGV 9 Unmodified _FLLDKKIGV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS UPN46_class_I_Rep_3 1 516.826904296875 2 516.826235 1031.63792 0.24377 0.00012599 -0.31476 -0.00016268 -0.070998 -3.6694E-05 516.826048290876 58.925 0.27114 58.925 58.696 58.968 0 56 29 3 0 0 0 0.19147 1 12976 12976 21.537 6.6987 1 347440 8378 4225 5120 5125 10460 10460 0.12336380896454102 FLLDKKIGV 9 Unmodified _FLLDKKIGV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS UPN46_class_I_Rep_3 1 516.8261108398438 2 516.826235 1031.63792 0.24412 0.00012617 0.031454 1.6256E-05 0.27557 0.00014242 516.8259548963515 59.032 0.081898 59.032 58.968 59.049 0 15 9 2 0 0 0 0.14216 1 13029 13029 26.268 7.0112 1 428500 8379 4225 5120 5125 10461 10461 0.12336380896454102 FLLDTTKIQ 9 Unmodified _FLLDTTKIQ_ 0 0 0 REV__nc|ENSG00000173157|P59510|ADAMTS20 REV__nc|ENSG00000173157|P59510|ADAMTS20 MSMS UPN47_class_I_Rep_1 2 539.7921752929688 2 539.810782 1077.60701 NaN NaN NaN NaN NaN NaN NaN 71.516 1 74.891 74.391 75.391 3.3751 0 0 0 0.11494 1 17442 17442 21.747 0 1 + 8380 20474 5121 5126 10462 10462 0.0713118279156788 FLLDYNPSS 9 Unmodified _FLLDYNPSS_ 0 0 0 L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|10|1|anti-sense L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|10|1|anti-sense L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|10|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.2562255859375 2 528.25584 1054.49713 0.35611 0.00018811 0.035837 1.8931E-05 0.39194 0.00020705 528.2558118042214 78.163 0.29298 81.592 81.376 81.669 3.4289 38 29 2 0 0 0 0.20276 1 19439 19439 20.454 1.1966 1 97115 8381 12694 5122 5127 10463 10463 -0.02794242547633985 FLLDYNPSS 9 Unmodified _FLLDYNPSS_ 0 0 0 L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|10|1|anti-sense L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|10|1|anti-sense L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|10|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.245849609375 2 528.25584 1054.49713 0.21544 0.00011381 0.059124 3.1233E-05 0.27456 0.00014504 528.2558053177216 78.39 0.38625 81.733 81.408 81.795 3.3428 61 43 2 0 0 0 0.36392 1 19460 19460 10.074 0.6908 1 137760 8382 12694 5122 5127 10464 10464 -0.02794242547633985 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN46_class_I_Rep_3 1 524.8145751953125 2 524.313492 1046.61243 0.30593 0.0001604 -0.14581 -7.6448E-05 0.16013 8.3957E-05 524.3134166462193 77.431 0.35461 77.431 77.259 77.614 0 46 36 2 0 0 0 0.12096 1 18089 18089 29.841 4.4413 1 169020 8383 2418 5123 5128 10465 10465 0.09098906374038052 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN46_class_I_Rep_3 1 524.3135375976562 2 524.313492 1046.61243 NaN NaN NaN NaN NaN NaN NaN 77.205 1 77.205 76.705 77.705 0 0 0 0 0.045102 1 18038 18038 38.615 8.7742 1 8384 2418 5123 5128 10466 10466 0.09098906374038052 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_1 2 524.3135986328125 2 524.313492 1046.61243 NaN NaN NaN NaN NaN NaN NaN 69.758 1 73.126 72.626 73.626 3.3678 0 0 0 0.020029 1 16920 16920 53.404 13.454 1 8385 2418 5123 5128 10467 10467 0.09098906374038052 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_2 3 524.313232421875 2 524.313492 1046.61243 0.033151 1.7382E-05 0.85135 0.00044638 0.88451 0.00046376 524.3141895750801 70.244 0.70423 73.527 73.306 74.011 3.2828 123 66 3 0 0 0 0.0073203 6 17105 17075;17099;17105;17122;17138;17183 71.708 13.986 1 267680 8386 2418 5123 5128 10468;10469;10470;10471;10472;10473 10470 0.09098906374038052 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_3 4 524.313720703125 2 524.313492 1046.61243 NaN NaN NaN NaN NaN NaN NaN 70.339 1 73.551 73.051 74.051 3.2113 0 0 0 0.049049 1 17201 17201 37.075 12.084 1 8387 2418 5123 5128 10474 10474 0.09098906374038052 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_3 4 524.3155517578125 2 524.313492 1046.61243 NaN NaN NaN NaN NaN NaN NaN 70.404 1 73.615 73.115 74.115 3.2113 0 0 0 0.062145 1 17219 17219 33.445 9.4243 1 8388 2418 5123 5128 10475 10475 0.09098906374038052 FLLEGIRSL 9 Unmodified _FLLEGIRSL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MATCH UPN47_class_I_Rep_1 2 2 524.313492 1046.61243 0.28875 0.00015139 0.78832 0.00041333 1.0771 0.00056472 524.3138450902811 70.449 0.40624 73.82 73.617 74.023 3.3713 0.14662 -3.3697E-05 NaN 71.708 61 39 2 NaN NaN NaN NaN 0 NaN NaN 0 69506 8389 2418 5123 5128 0.09098906374038052 FLLELGMLL 9 Unmodified _FLLELGMLL_ 0 0 0 REV__L1MB8_dup10625|chr10:119056245-119056472:+|1.0378910630595697|0.0388639471117016|4.74|151.0|2|1|sense REV__L1MB8_dup10625|chr10:119056245-119056472:+|1.0378910630595697|0.0388639471117016|4.74|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 524.810791015625 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 50.504 1 54.125 53.625 54.625 3.621 0 0 0 0.26661 1 10253 10253 12.532 0 1 + 8390 26337 5124 5129 10476 10476 0.08194216413221511 FLLFILKNH 9 Unmodified _FLLFILKNH_ 0 0 0 REV__L1MC4_dup23029|chr19:29951099-29951549:-|1.2053157210591312|0.0109674679818762|6.78|151.0|30|2|anti-sense REV__L1MC4_dup23029|chr19:29951099-29951549:-|1.2053157210591312|0.0109674679818762|6.78|151.0|30|2|anti-sense MSMS UPN46_class_I_Rep_3 1 572.8480834960938 2 572.847502 1143.68045 NaN NaN NaN NaN NaN NaN NaN 16.924 1 16.924 16.424 17.424 0 0 0 0 0.40038 1 1251 1251 0.6015 0.076735 1 + 8391 26887 5125 5130 10477 10477 0.11435776024700317 FLLFNEKD 8 Unmodified _FLLFNEKD_ 0 0 0 ENST00000374776.5_1_10:34625168-34626337:-|nuORF ENST00000374776.5_1_10:34625168-34626337:-|nuORF ENST00000374776.5_1_10:34625168-34626337:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 513.26904296875 2 513.26875 1024.52295 0.15088 7.7444E-05 0.062912 3.2291E-05 0.2138 0.00010973 513.2686902396615 78.312 1.5474 81.655 81.2 82.748 3.3428 443 159 4 0 0 0 0.82752 1 19754 19754 4.756 0 1 2405800 8392 6432 5126 5131 10478 10478 0.011666516946661432 FLLFNEKD 8 Unmodified _FLLFNEKD_ 0 0 0 ENST00000374776.5_1_10:34625168-34626337:-|nuORF ENST00000374776.5_1_10:34625168-34626337:-|nuORF ENST00000374776.5_1_10:34625168-34626337:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.2687377929688 2 513.26875 1024.52295 0.29693 0.00015241 -0.074878 -3.8432E-05 0.22206 0.00011397 513.268615353532 78.389 1.6204 81.671 81.227 82.847 3.2816 459 161 4 0 0 0 0.82752 1 19768 19768 34.102 1.797 1 2327500 8393 6432 5126 5131 10479 10479 0.011666516946661432 FLLFRHILSI 10 Unmodified _FLLFRHILSI_ 0 0 0 REV__L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|45|2|anti-sense REV__L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_2 3 629.8896484375 2 629.887158 1257.75976 NaN NaN NaN NaN NaN NaN NaN 65.891 1 69.15 68.65 69.65 3.2588 0 0 0 0.53105 1 15795 15795 3.9444 0 1 + 8394 24998 5127 5132 10480 10480 0.14119422978842522 FLLGKVMGKVF 11 Unmodified _FLLGKVMGKVF_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000533685.1_1_11:64900606-64900720:-|nuORF;ENST00000529207.5_1_11:64899759-64900720:-|nuORF;ENST00000449943.5_1_11:64900197-64901072:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MSMS UPN47_class_I_Rep_1 2 619.8695068359375 2 619.87012 1237.72569 NaN NaN NaN NaN NaN NaN NaN 85.844 1 89.459 88.959 89.959 3.6153 0 0 0 0.38417 1 21438 21438 1.1933 0.66858 1 8395 3923 5128 5133 10481 10481 0.11633258495567134 FLLGNVYEA 9 Unmodified _FLLGNVYEA_ 0 0 0 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS UPN47_class_I_Rep_2 3 513.7700805664062 2 513.26875 1024.52295 0.15088 7.7444E-05 0.062912 3.2291E-05 0.2138 0.00010973 513.2686902396615 78.312 1.5474 81.655 81.2 82.748 3.3428 443 159 4 0 0 0 0.15122 1 19661 19661 25.399 3.8623 1 2405800 8396 2696 5129 5134 10482 10482 0.011666516946661432 FLLGNVYEA 9 Unmodified _FLLGNVYEA_ 0 0 0 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS UPN47_class_I_Rep_3 4 513.2686767578125 2 513.26875 1024.52295 0.29693 0.00015241 -0.074878 -3.8432E-05 0.22206 0.00011397 513.268615353532 78.389 1.6204 81.671 81.227 82.847 3.2816 459 161 4 0 0 0 0.027484 3 19651 19438;19651;19722 58.679 3.9053 1 2327500 8397 2696 5129 5134 10483;10484;10485 10484 0.011666516946661432 FLLHHWAA 8 Unmodified _FLLHHWAA_ 0 0 0 THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|61|1|anti-sense THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|61|1|anti-sense THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_2 3 497.764892578125 2 497.766512 993.518471 NaN NaN NaN NaN NaN NaN NaN 34.347 1 37.772 37.272 38.272 3.4253 0 0 0 0.40738 1 6201 6201 0.79363 0.10326 1 8398 32896 5130 5135 10486 10486 0.02145232062400737 FLLHIQQQV 9 Unmodified _FLLHIQQQV_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MULTI-MSMS UPN47_class_I_Rep_1 2 563.3251953125 2 563.324391 1124.63423 0.37994 0.00021403 -0.26314 -0.00014823 0.1168 6.5794E-05 563.3241906754228 57.447 0.51802 60.884 60.701 61.219 3.437 56 46 2 0 0 0 0.35081 2 13194 13194;13234 10.824 3.9444 1 79353 8399 2053 5131 5136 10487;10488 10487 0.0768971112258896 FLLILDNSL 9 Unmodified _FLLILDNSL_ 0 0 0 L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|33|1|anti-sense L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|33|1|anti-sense L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.3074340820312 2 524.307875 1046.6012 0.34374 0.00018023 -0.5192 -0.00027222 -0.17546 -9.1995E-05 524.3074973552075 69.668 0.6787 72.872 72.686 73.365 3.2044 144 52 4 0 0 0 0.19147 1 17078 17078 21.537 0 1 716990 8400 12407 5132 5137 10489 10489 0.07976084279880524 FLLKNSPVLPQ 11 Unmodified _FLLKNSPVLPQ_ 0 0 0 ENST00000433096.1_1_20:32833878-32833959:-|nuORF ENST00000433096.1_1_20:32833878-32833959:-|nuORF ENST00000433096.1_1_20:32833878-32833959:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 628.3741455078125 2 628.374081 1254.73361 0.57155 0.00035915 0.023009 1.4459E-05 0.59456 0.00037361 628.3741007873923 36.15 0.11235 36.15 36.107 36.22 0 9 8 2 0 0 0 0.67519 1 6680 6680 0.96228 0.43751 1 146650 8401 6736 5133 5138 10490 10490 0.11643109016722519 FLLLDWKL 8 Unmodified _FLLLDWKL_ 0 0 0 REV__L1MC4a_dup1655|chr3:30675696-30676614:-|2.353535543083265|0.2379607220712614|3.31|151.0|61|3|anti-sense REV__L1MC4a_dup1655|chr3:30675696-30676614:-|2.353535543083265|0.2379607220712614|3.31|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_3 4 524.3077392578125 2 524.315503 1046.61645 NaN NaN NaN NaN NaN NaN NaN 69.401 1 72.605 72.105 73.105 3.2044 0 0 0 0.33946 1 16920 16920 24.674 3.1369 1 + 8402 26976 5134 5139 10491 10491 0.09500995867756501 FLLLGMLRS 9 Unmodified _FLLLGMLRS_ 0 0 0 ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|4|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|8|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|1|intron;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron MSMS UPN47_class_I_Rep_2 3 525.3130493164062 2 525.312438 1048.61032 NaN NaN NaN NaN NaN NaN NaN 50.61 1 53.948 53.448 54.448 3.3386 0 0 0 0.3264 1 11139 11139 9.3474 0 1 8403 4022 5135 5140 10492 10492 0.08796154364586073 FLLLGMLRS 9 Unmodified _FLLLGMLRS_ 0 0 0 ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|4|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|8|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|1|intron;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron MSMS UPN48_class_I_Rep_2 6 525.3131713867188 2 525.312438 1048.61032 NaN NaN NaN NaN NaN NaN NaN 50.355 1 54.049 53.549 54.549 3.6946 0 0 0 0.3264 1 10272 10272 9.3474 0 1 8404 4022 5135 5140 10493 10493 0.08796154364586073 FLLLHIFTS 9 Unmodified _FLLLHIFTS_ 0 0 0 L1MC2_dup5476|chr17:42372016-42372700:+|1.8242420512221784|0.0421862450577726|5.43|151.0|51|3|anti-sense L1MC2_dup5476|chr17:42372016-42372700:+|1.8242420512221784|0.0421862450577726|5.43|151.0|51|3|anti-sense L1MC2_dup5476|chr17:42372016-42372700:+|1.8242420512221784|0.0421862450577726|5.43|151.0|51|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.8287353515625 2 545.81841 1089.62227 NaN NaN NaN NaN NaN NaN NaN 55.143 1 58.645 58.145 59.145 3.5014 0 0 0 0.39518 1 12494 12494 1.8442 0 1 8405 11275 5136 5141 10494 10494 0.08104094379427806 FLLLHYLC 8 Unmodified _FLLLHYLC_ 0 0 0 REV__L1PREC2_dup7332|chr19:21831659-21832594:+|1.2284372468014102|0.0431500483160603|4.83|151.0|39|1|anti-sense REV__L1PREC2_dup7332|chr19:21831659-21832594:+|1.2284372468014102|0.0431500483160603|4.83|151.0|39|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2802734375 2 511.280606 1020.54666 0.34721 0.00017752 -1.1748 -0.00060066 -0.82761 -0.00042314 511.28011953864507 27.934 0.26822 31.565 31.515 31.783 3.6311 31 27 2 0 0 0 0.82752 1 3796 3796 0.79363 0 1 54051 + 8406 30753 5137 5142 10495 10495 0.037207939274708224 FLLLHYLC 8 Unmodified _FLLLHYLC_ 0 0 0 REV__L1PREC2_dup7332|chr19:21831659-21832594:+|1.2284372468014102|0.0431500483160603|4.83|151.0|39|1|anti-sense REV__L1PREC2_dup7332|chr19:21831659-21832594:+|1.2284372468014102|0.0431500483160603|4.83|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_3 7 511.280517578125 2 511.280606 1020.54666 NaN NaN NaN NaN NaN NaN NaN 27.796 1 31.552 31.052 32.052 3.7555 0 0 0 0.40738 1 3694 3694 0.79363 0 1 + 8407 30753 5137 5142 10496 10496 0.037207939274708224 FLLLMPLVS 9 Unmodified _FLLLMPLVS_ 0 0 0 L1MB8_dup6231|chr7:37185701-37187479:+|4.179784016177832|0.0268232291346537|7.28|151.0|106|2|anti-sense L1MB8_dup6231|chr7:37185701-37187479:+|4.179784016177832|0.0268232291346537|7.28|151.0|106|2|anti-sense L1MB8_dup6231|chr7:37185701-37187479:+|4.179784016177832|0.0268232291346537|7.28|151.0|106|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.79541015625 2 516.811739 1031.60893 NaN NaN NaN NaN NaN NaN NaN 60.409 1 63.675 63.175 64.175 3.2654 0 0 0 0.19137 1 14133 14133 16.942 0.79319 1 8408 11024 5138 5143 10497 10497 0.09438520275807605 FLLLSIGPVP 10 Unmodified _FLLLSIGPVP_ 0 0 0 ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.3282470703125 2 528.328611 1054.64267 0.32257 0.00017042 -0.19638 -0.00010375 0.12619 6.667E-05 528.328384232242 72.418 0.6767 75.798 75.477 76.153 3.3799 80 51 2 0 0 0 0.51565 1 17750 17750 10.074 0.6908 1 112290 8409 6966 5139 5144 10498 10498 0.11753265039237704 FLLLSIGPVP 10 Unmodified _FLLLSIGPVP_ 0 0 0 ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 528.3280029296875 2 528.328611 1054.64267 0.1692 8.9393E-05 -0.064767 -3.4218E-05 0.10443 5.5175E-05 528.3284134010509 72.722 0.465 76.02 75.695 76.16 3.2971 81 42 3 0 0 0 0.46161 3 17866 17786;17828;17866 14.838 0.93222 1 104560 8410 6966 5139 5144 10499;10500;10501 10501 0.11753265039237704 FLLLSIGPVP 10 Unmodified _FLLLSIGPVP_ 0 0 0 ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.32861328125 2 528.328611 1054.64267 0.37869 0.00020007 -0.26265 -0.00013876 0.11605 6.131E-05 528.3284580823388 72.613 0.35675 75.84 75.663 76.02 3.2271 49 27 3 0 0 0 0.46161 1 17903 17903 14.838 0.93222 1 108760 8411 6966 5139 5144 10502 10502 0.11753265039237704 FLLLSIGPVP 10 Unmodified _FLLLSIGPVP_ 0 0 0 ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF MSMS UPN47_class_I_Rep_3 4 528.3284301757812 2 528.328611 1054.64267 NaN NaN NaN NaN NaN NaN NaN 72.829 1 76.056 75.556 76.556 3.2271 0 0 0 0.53105 1 17950 17950 10.074 0.6908 1 8412 6966 5139 5144 10503 10503 0.11753265039237704 FLLLSIGPVP 10 Unmodified _FLLLSIGPVP_ 0 0 0 ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF MSMS UPN47_class_I_Rep_3 4 528.3287963867188 2 528.328611 1054.64267 NaN NaN NaN NaN NaN NaN NaN 73.055 1 76.282 75.782 76.782 3.2271 0 0 0 0.53105 1 18018 18018 10.824 4.1008 1 8413 6966 5139 5144 10504 10504 0.11753265039237704 FLLPAAMENN 10 Unmodified _FLLPAAMENN_ 0 0 0 REV__ENSG00000168038|ENST00000301831|ULK4 REV__ENSG00000168038|ENST00000301831|ULK4 MSMS UPN48_class_I_Rep_1 5 560.2783203125 2 560.278792 1118.54303 NaN NaN NaN NaN NaN NaN NaN 75.555 1 79.055 78.555 79.555 3.4996 0 0 0 0.53105 1 17906 17906 1.8442 1.0506 1 + 8414 20257 5140 5145 10505 10505 -0.011499206370217507 FLLPFLPVF 9 Unmodified _FLLPFLPVF_ 0 0 0 L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|148|1|anti-sense L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|148|1|anti-sense L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|148|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 547.3322143554688 2 546.828246 1091.64194 0.51242 0.0002802 0.32754 0.00017911 0.83996 0.00045931 547.3317237012561 72.849 0.38164 76.386 76.208 76.59 3.5373 44 30 2 0 0 0 0.2896 1 17014 17014 14.582 0 1 107920 8415 8647 5141 5146 10506 10506 0.09978470390183247 FLLPFLPVF 9 Unmodified _FLLPFLPVF_ 0 0 0 L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|148|1|anti-sense L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|148|1|anti-sense L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|148|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 546.828246 1091.64194 0.4838 0.00026455 0.90949 0.00049734 1.3933 0.00076189 547.3318071048919 73.099 0.22321 76.58 76.492 76.716 3.4812 0.096854 0.00038513 NaN 14.582 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 72754 8416 8647 5141 5146 0.09978470390183247 FLLPILSQI 9 Unmodified _FLLPILSQI_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MSMS UPN47_class_I_Rep_2 3 522.3292236328125 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 103.66 1 107.19 106.69 107.69 3.5289 0 0 0 1.8077E-06 1 25194 25194 69.105 12.928 1 8417 1027 5142 5147 10507 10507 0.12305265039231017 FLLQFSGVD 9 Unmodified _FLLQFSGVD_ 0 0 0 REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.2686157226562 2 513.26875 1024.52295 0.27582 0.00014157 -0.033446 -1.7167E-05 0.24237 0.0001244 513.2686452013764 78.066 1.3085 81.495 81.098 82.407 3.4289 269 128 3 0 0 0 0.13631 1 19563 19563 26.884 1.4843 1 2011500 + 8418 25254 5143 5148 10508 10508 0.011666516946661432 FLLQFSGVD 9 Unmodified _FLLQFSGVD_ 0 0 0 REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.26904296875 2 513.26875 1024.52295 0.15088 7.7444E-05 0.062912 3.2291E-05 0.2138 0.00010973 513.2686902396615 78.312 1.5474 81.655 81.2 82.748 3.3428 443 159 4 0 0 0 0.25207 1 19351 19351 16.942 1.0951 1 2405800 + 8419 25254 5143 5148 10509 10509 0.011666516946661432 FLLQFSGVD 9 Unmodified _FLLQFSGVD_ 0 0 0 REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_2 3 513.2681274414062 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 79.8 1 83.155 82.655 83.655 3.3554 0 0 0 0.17222 1 19877 19877 18.146 0 1 + 8420 25254 5143 5148 10510 10510 0.011666516946661432 FLLQFSGVD 9 Unmodified _FLLQFSGVD_ 0 0 0 REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2693481445312 2 513.26875 1024.52295 0.29693 0.00015241 -0.074878 -3.8432E-05 0.22206 0.00011397 513.268615353532 78.389 1.6204 81.671 81.227 82.847 3.2816 459 161 4 0 0 0 0.33654 1 19422 19422 11.64 4.3511 1 2327500 + 8421 25254 5143 5148 10511 10511 0.011666516946661432 FLLQFSGVD 9 Unmodified _FLLQFSGVD_ 0 0 0 REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.7247139731506684|0.4304615177296836|2.66|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.77099609375 2 513.26875 1024.52295 0.29986 0.00015391 -0.48815 -0.00025055 -0.1883 -9.6646E-05 513.2683538072187 79.905 0.2925 83.214 82.992 83.285 3.309 51 32 2 0 0 0 0.25207 1 19994 19994 16.942 1.0951 1 96291 + 8422 25254 5143 5148 10512 10512 0.011666516946661432 FLLQLQEEL 9 Unmodified _FLLQLQEEL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS UPN47_class_I_Rep_3 4 567.330078125 2 566.816064 1131.61758 0.48054 0.00027238 -0.63038 -0.00035731 -0.14984 -8.4929E-05 566.8158751981431 84.604 0.37245 87.966 87.69 88.063 3.3615 77 46 2 0 0 0 0.11648 2 21248 21235;21248 30.703 9.1665 1 150690 8423 1389 5144 5149 10513;10514 10514 0.057031654459933634 FLLQLQEEL 9 Unmodified _FLLQLQEEL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS UPN47_class_I_Rep_3 4 566.8161010742188 2 566.816064 1131.61758 0.48119 0.00027275 0.13481 7.6412E-05 0.616 0.00034916 566.8162717005852 84.813 0.038612 88.174 88.159 88.197 3.3615 6 5 2 0 0 0 0.21414 1 21287 21287 19.362 6.3195 1 60287 8424 1389 5144 5149 10515 10515 0.057031654459933634 FLLSCTTSPS 10 Unmodified _FLLSCTTSPS_ 0 0 0 ENST00000395738.2_1_22:50921135-50921831:+|nuORF ENST00000395738.2_1_22:50921135-50921831:+|nuORF ENST00000395738.2_1_22:50921135-50921831:+|nuORF MSMS UPN47_class_I_Rep_1 2 528.2550659179688 2 528.257525 1054.5005 NaN NaN NaN NaN NaN NaN NaN 78.396 1 81.841 81.341 82.341 3.4456 0 0 0 0.53105 1 19489 19489 13.042 3.695 1 8425 6555 5145 5150 10516 10516 -0.024573157652639566 FLLSRDFEA 9 Unmodified _FLLSRDFEA_ 0 0 0 ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A MULTI-SECPEP UPN47_class_I_Rep_1 2 549.7261352539062 2 549.284931 1096.55531 0.44456 0.00024419 -1.4394 -0.00079066 -0.99488 -0.00054647 549.2843947821261 59.299 0.79021 62.716 62.414 63.204 3.4171 104 53 3 0 0 0 0.063482 1 13744 13744 26.268 5.8145 1 265430 8426 1738 5146 5151 10517 10517 0.010894390976773138 FLLSRDFEA 9 Unmodified _FLLSRDFEA_ 0 0 0 ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A MULTI-MSMS UPN47_class_I_Rep_2 3 549.2852783203125 2 549.284931 1096.55531 0.48604 0.00026697 -1.4966 -0.00082205 -1.0105 -0.00055507 549.2843393414512 59.607 0.73765 62.88 62.545 63.283 3.2731 76 47 2 0 0 0 0.17897 1 13846 13846 22.736 1.8651 1 290590 8427 1738 5146 5151 10518 10518 0.010894390976773138 FLLSTGHVI 9 Unmodified _FLLSTGHVI_ 0 0 0 MER31A_dup1007|chr12:101908388-101908852:-|1.3570551238417865|0.0247320186929682|5.78|151.0|21|1|anti-sense MER31A_dup1007|chr12:101908388-101908852:-|1.3570551238417865|0.0247320186929682|5.78|151.0|21|1|anti-sense MER31A_dup1007|chr12:101908388-101908852:-|1.3570551238417865|0.0247320186929682|5.78|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.7861633300781 2 493.78711 985.559667 0.16542 8.1683E-05 -1.5256 -0.00075331 -1.3602 -0.00067162 493.78628993417783 109.27 0.045456 112.91 112.88 112.92 3.6321 9 5 2 0 0 0 0.45688 1 26531 26531 4.756 0.42677 1 885720 8428 15911 5147 5152 10519 10519 0.06630948311249085 FLLSWRHWI 9 Unmodified _FLLSWRHWI_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|337|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|337|3|anti-sense MSMS UPN46_class_I_Rep_3 1 628.8894653320312 2 629.3482 1256.68185 NaN NaN NaN NaN NaN NaN NaN 63.147 1 63.147 62.647 63.647 0 0 0 0 0.38639 1 14164 14164 3.9444 0.3479 1 + 8429 30691 5148 5153 10520 10520 0.06377410113464066 FLLTIENEL 9 Unmodified _FLLTIENEL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-MSMS UPN47_class_I_Rep_3 4 546.3038330078125 2 546.30279 1090.59103 0.46781 0.00025557 0.31537 0.00017229 0.78318 0.00042785 546.3029613526809 84.099 0.14198 87.449 87.327 87.469 3.35 23 16 2 0 0 0 0.12795 1 21099 21099 28.495 3.5035 1 72220 8430 3071 5149 5154 10521 10521 0.04935476554669549 FLLTIENEL 9 Unmodified _FLLTIENEL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-MSMS UPN47_class_I_Rep_3 4 546.3021850585938 2 546.30279 1090.59103 0.46832 0.00025585 -0.20567 -0.00011236 0.26265 0.00014348 546.3026068333162 84.277 0.29202 87.638 87.472 87.764 3.3615 58 32 2 0 0 0 0.015319 3 21130 21130;21161;21170 66.457 20.757 1 112560 8431 3071 5149 5154 10522;10523;10524 10522 0.04935476554669549 FLLTIENEL 9 Unmodified _FLLTIENEL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MSMS UPN47_class_I_Rep_3 4 546.3031616210938 2 546.30279 1090.59103 NaN NaN NaN NaN NaN NaN NaN 84.518 1 87.88 87.38 88.38 3.3615 0 0 0 0.29913 1 21213 21213 10.8 1.4164 1 8432 3071 5149 5154 10525 10525 0.04935476554669549 FLLTTRNAL 9 Unmodified _FLLTTRNAL_ 0 0 0 REV__MLT1L_dup5481|chr7:105622491-105623071:+|1.0008554921107458|0.103835192242689|3.27|151.0|1|1|sense REV__MLT1L_dup5481|chr7:105622491-105623071:+|1.0008554921107458|0.103835192242689|3.27|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 524.8120727539062 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 50.223 1 53.852 53.352 54.352 3.6285 0 0 0 0.32573 1 10994 10994 9.3831 0 1 + 8433 31799 5150 5155 10526 10526 0.08578022231267823 FLLWATAEA 9 Unmodified _FLLWATAEA_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MULTI-MSMS UPN47_class_I_Rep_1 2 511.2713928222656 2 511.271293 1020.52803 0.28403 0.00014522 -0.3623 -0.00018524 -0.078273 -4.0019E-05 511.27096406799274 81.459 0.42846 84.947 84.714 85.142 3.4874 68 43 2 0 0 0 0.13631 2 20314 20277;20314 26.884 18.973 1 101260 8434 4433 5151 5156 10527;10528 10528 0.018589555572589234 FLLWATAEA 9 Unmodified _FLLWATAEA_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MSMS UPN47_class_I_Rep_2 3 511.2713928222656 2 511.271293 1020.52803 NaN NaN NaN NaN NaN NaN NaN 81.453 1 84.837 84.337 85.337 3.3839 0 0 0 0.2088 1 20286 20286 15.847 10.55 1 8435 4433 5151 5156 10529 10529 0.018589555572589234 FLLWATAEA 9 Unmodified _FLLWATAEA_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MSMS UPN47_class_I_Rep_2 3 511.2717590332031 2 511.271293 1020.52803 NaN NaN NaN NaN NaN NaN NaN 81.545 1 84.929 84.429 85.429 3.3839 0 0 0 0.096434 1 20310 20310 25.399 16.654 1 8436 4433 5151 5156 10530 10530 0.018589555572589234 FLLWATAEA 9 Unmodified _FLLWATAEA_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MULTI-MSMS UPN47_class_I_Rep_3 4 511.773681640625 2 511.271293 1020.52803 0.29845 0.00015259 0.079928 4.0865E-05 0.37838 0.00019346 511.27134390139685 81.834 0.3624 85.157 85.045 85.408 3.3231 55 41 2 0 0 0 0.041849 2 20501 20501;20515 52.268 39.737 1 96211 8437 4433 5151 5156 10531;10532 10531 0.018589555572589234 FLLWATAEA 9 Unmodified _FLLWATAEA_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MSMS UPN47_class_I_Rep_3 4 511.27081298828125 2 511.271293 1020.52803 NaN NaN NaN NaN NaN NaN NaN 81.478 1 84.801 84.301 85.301 3.3231 0 0 0 0.28335 1 20391 20391 11.64 3.7301 1 8438 4433 5151 5156 10533 10533 0.018589555572589234 FLLWATAEA 9 Unmodified _FLLWATAEA_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MSMS UPN47_class_I_Rep_3 4 511.27117919921875 2 511.271293 1020.52803 NaN NaN NaN NaN NaN NaN NaN 81.604 1 84.927 84.427 85.427 3.3231 0 0 0 0.046744 1 20427 20427 37.974 27.174 1 8439 4433 5151 5156 10534 10534 0.018589555572589234 FLLWRWLM 8 Unmodified _FLLWRWLM_ 0 0 0 REV__Tigger1_dup4786|chr6:38484585-38486896:-|2.031216074369821|0.1476632806042457|3.78|151.0|98|1|anti-sense REV__Tigger1_dup4786|chr6:38484585-38486896:-|2.031216074369821|0.1476632806042457|3.78|151.0|98|1|anti-sense MSMS UPN46_class_I_Rep_3 1 582.8236083984375 2 582.822973 1163.63139 NaN NaN NaN NaN NaN NaN NaN 79.169 1 79.169 78.669 79.669 0 0 0 0 0.40404 1 18582 18582 5.2307 0.33366 1 + 8440 32456 5152 5157 10535 10535 0.05612164464082525 FLLWWWFFFFF 11 Unmodified _FLLWWWFFFFF_ 0 0 0 REV__AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense REV__AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 562.8071899414062 3 562.616315 1684.82712 0.048513 2.7294E-05 -0.61859 -0.00034803 -0.57008 -0.00032074 562.9502400040783 13.519 0.20859 16.907 16.823 17.031 3.388 32 25 2 0 0 0 22.551 1 332 332 0 0 1 32658 + 8441 16967 5153 5158 10536 10536 0.012094531897446359 FLLWWWFFFFF 11 Unmodified _FLLWWWFFFFF_ 0 0 0 REV__AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense REV__AluJb_dup8116|chr1:156485523-156485829:-|1.5622672048828798|0.0692470736900256|4.5|151.0|20|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 562.616315 1684.82712 -0.12209 -6.8687E-05 0.078728 4.4294E-05 -0.043358 -2.4394E-05 562.9505746665405 13.385 0.18842 16.842 16.743 16.931 3.457 -0.032642 0.00050598 NaN 0 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 40657 + 8442 16967 5153 5158 0.012094531897446359 FLLYNKKPQD 10 Unmodified _FLLYNKKPQD_ 0 0 0 REV__HAL1_dup18394|chr14:58367686-58368626:+|1.7249461560240875|0.4139324712738497|2.06|151.0|21|2|sense REV__HAL1_dup18394|chr14:58367686-58368626:+|1.7249461560240875|0.4139324712738497|2.06|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 633.347900390625 2 633.348063 1264.68157 NaN NaN NaN NaN NaN NaN NaN 107.18 1 110.87 110.37 111.37 3.6899 0 0 0 0.53105 1 25260 25260 3.5965 0 1 + 8443 23382 5154 5159 10537 10537 0.05981945602934502 FLMDFIHQV 9 Oxidation (M) _FLM(Oxidation (M))DFIHQV_ FLM(1)DFIHQV FLM(58)DFIHQV 0 0 1 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MULTI-MSMS UPN46_class_I_Rep_3 1 583.28955078125 2 583.289159 1164.56377 0.48067 0.00028037 0.16143 9.4161E-05 0.6421 0.00037453 583.2891890093919 71.934 0.15371 71.934 71.917 72.071 0 18 11 2 0 0 0 0.028995 1 16602 16602 57.722 27.085 1 1201400 8444 1056 5155 5160 10538 10538 27 -0.0119333025738797 FLMDFIHQV 9 Oxidation (M) _FLM(Oxidation (M))DFIHQV_ FLM(1)DFIHQV FLM(76)DFIHQV 0 0 1 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MULTI-MSMS UPN46_class_I_Rep_3 1 583.7918701171875 2 583.289159 1164.56377 0.48132 0.00028075 -0.23025 -0.0001343 0.25106 0.00014644 583.2888808780503 72.214 0.22356 72.214 72.071 72.294 0 33 23 2 0 0 0 0.0061372 1 16645 16645 75.761 29.74 1 129520 8445 1056 5155 5160 10539 10539 27 -0.0119333025738797 FLMDFIHQV 9 Oxidation (M) _FLM(Oxidation (M))DFIHQV_ FLM(1)DFIHQV FLM(72)DFIHQV 0 0 1 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MSMS UPN46_class_I_Rep_3 1 583.287841796875 2 583.289159 1164.56377 NaN NaN NaN NaN NaN NaN NaN 72.273 1 72.273 71.773 72.773 0 0 0 0 8.5505E-07 1 16698 16698 71.922 33.948 1 8446 1056 5155 5160 10540 10540 27 -0.0119333025738797 FLMPLPGVF 9 Unmodified _FLMPLPGVF_ 0 0 0 ENSG00000177257|ENST00000318157|DEFB4B;ENSG00000171711|ENST00000302247|DEFB4A ENSG00000177257|ENST00000318157|DEFB4B ENSG00000177257|ENST00000318157|DEFB4B MSMS UPN47_class_I_Rep_3 4 510.78118896484375 2 510.782982 1019.55141 NaN NaN NaN NaN NaN NaN NaN 53.848 1 57.034 56.534 57.534 3.1865 0 0 0 0.381 1 12179 12179 5.2307 0.47466 1 8447 4540 5156 5161 10541 10541 0.04241678070263788 FLMRHLKM 8 Unmodified _FLMRHLKM_ 0 0 0 ENST00000515408.5_1_5:112327874-112328375:+|nuORF ENST00000515408.5_1_5:112327874-112328375:+|nuORF ENST00000515408.5_1_5:112327874-112328375:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 538.861572265625 2 538.298807 1074.58306 0.35709 0.00019222 4.1264 0.0022212 4.4835 0.0024135 538.802731487673 93.145 0.032349 93.145 93.118 93.15 0 4 2 2 0 0 0 0.82752 1 22562 22562 14.582 5.2343 1 199890 8448 7204 5157 5162 10542 10542 0.04875347552547282 FLNGEVIRL 9 Unmodified _FLNGEVIRL_ 0 0 0 ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10 ENST00000477706.1_1_X:53458354-53459024:-|nuORF ENST00000477706.1_1_X:53458354-53459024:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.8123779296875 2 530.811116 1059.60768 0.3461 0.00018372 0.44032 0.00023373 0.78642 0.00041744 530.8113453313188 63.161 0.36335 66.521 66.254 66.617 3.3595 43 26 2 0 0 0 0.088679 1 14913 14913 36.506 8.8774 1 123160 8449 1102 5158 5163 10543 10543 0.0802602223127451 FLNGEVIRL 9 Unmodified _FLNGEVIRL_ 0 0 0 ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10 ENST00000477706.1_1_X:53458354-53459024:-|nuORF ENST00000477706.1_1_X:53458354-53459024:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 530.8117065429688 2 530.811116 1059.60768 0.21677 0.00011506 0.058091 3.0836E-05 0.27486 0.0001459 530.8111622959432 63.68 0.67463 66.936 66.537 67.212 3.2556 83 57 2 0 0 0 0.23293 2 15107 15038;15107 18.146 4.2403 1 137390 8450 1102 5158 5163 10544;10545 10545 0.0802602223127451 FLNGEVIRL 9 Unmodified _FLNGEVIRL_ 0 0 0 ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10 ENST00000477706.1_1_X:53458354-53459024:-|nuORF ENST00000477706.1_1_X:53458354-53459024:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 530.8121337890625 2 530.811116 1059.60768 0.36604 0.0001943 0.16548 8.7839E-05 0.53152 0.00028214 530.8112614412088 63.584 0.68454 66.758 66.456 67.141 3.1741 73 58 2 0 0 0 0.13244 4 15126 15091;15126;15164;15204 27.629 8.3718 1 121240 8451 1102 5158 5163 10546;10547;10548;10549 10547 0.0802602223127451 FLNGEVIRL 9 Unmodified _FLNGEVIRL_ 0 0 0 ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10 ENST00000477706.1_1_X:53458354-53459024:-|nuORF ENST00000477706.1_1_X:53458354-53459024:-|nuORF MSMS UPN47_class_I_Rep_3 4 530.812255859375 2 530.811116 1059.60768 NaN NaN NaN NaN NaN NaN NaN 64.108 1 67.282 66.782 67.782 3.1741 0 0 0 0.32573 1 15309 15309 9.3831 3.1773 1 8452 1102 5158 5163 10550 10550 0.0802602223127451 FLNGIIDRI 9 Unmodified _FLNGIIDRI_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000463793.1_1_1:234546169-234556549:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 530.8113403320312 2 530.811116 1059.60768 0.34372 0.00018245 0.45436 0.00024118 0.79808 0.00042363 530.8113021793388 63.298 0.32685 66.657 66.574 66.901 3.3595 33 27 2 0 0 0 0.23293 1 14955 14955 18.146 0 1 122630 8453 963 5159 5164 10551 10551 0.0802602223127451 FLNKITTKK 9 Unmodified _FLNKITTKK_ 0 0 0 MER4A_dup803|chr21:29359585-29360327:+|3.3899504654788064|0.0830780483578974|5.35|151.0|23|3|sense MER4A_dup803|chr21:29359585-29360327:+|3.3899504654788064|0.0830780483578974|5.35|151.0|23|3|sense MER4A_dup803|chr21:29359585-29360327:+|3.3899504654788064|0.0830780483578974|5.35|151.0|23|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 546.8396606445312 2 546.842416 1091.67028 0.46481 0.00025418 -2.3806 -0.0013018 -1.9158 -0.0010477 546.8397655239829 93.737 0.038406 97.629 97.606 97.644 3.8914 6 4 2 0 0 0 0.12462 1 22222 22222 1.8442 0 1 72741 8454 16017 5160 5165 10552 10552 0.1281116829943585 FLNNMMIL 8 Unmodified _FLNNMMIL_ 0 0 0 REV__L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|149|1|anti-sense REV__L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|149|1|anti-sense MSMS UPN48_class_I_Rep_2 6 498.2547912597656 2 498.256274 994.497995 NaN NaN NaN NaN NaN NaN NaN 20.241 1 23.89 23.39 24.39 3.6487 0 0 0 0.40738 1 1701 1701 0.79363 0 1 + 8455 26070 5161 5166 10553 10553 0.0005255729607824833 FLNNSWPL 8 Unmodified _FLNNSWPL_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS UPN48_class_I_Rep_3 7 495.75360107421875 2 495.75581 989.497067 NaN NaN NaN NaN NaN NaN NaN 36.665 1 40.328 39.828 40.828 3.663 0 0 0 0.40472 1 6092 6092 4.3292 0.38484 1 8456 5019 5162 5167 10554 10554 0.0018980224302822535 FLPDPFFQV 9 Unmodified _FLPDPFFQV_ 0 0 0 nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H;nc|ENSG00000284690|A0A0K2S4Q6|CD300H nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H MULTI-MSMS UPN46_class_I_Rep_3 1 555.2870483398438 2 555.286943 1108.55933 0.41918 0.00023276 -0.22188 -0.00012321 0.1973 0.00010956 555.2867426035277 98.677 0.030472 98.677 98.659 98.69 0 6 2 3 0 0 0 0.43153 1 24029 24029 6.2058 2.9245 1 68385 8457 16852 5163 5168 10555 10555 0.009395285913797125 FLPFKENTF 9 Unmodified _FLPFKENTF_ 0 0 0 ENST00000464269.5_1_20:13773870-13789559:+|nuORF;ENST00000485738.5_1_20:13765717-13782219:+|nuORF;ENSG00000101247|ENST00000378106|NDUFAF5 ENST00000464269.5_1_20:13773870-13789559:+|nuORF ENST00000464269.5_1_20:13773870-13789559:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 572.2987060546875 2 571.797675 1141.5808 0.4582 0.000262 -0.26816 -0.00015333 0.19004 0.00010866 571.7974058445254 68.089 0.54089 71.54 71.258 71.799 3.4517 73 44 2 0 0 0 0.47493 1 15721 15721 3.2813 1.2216 1 135700 8458 1559 5164 5169 10556 10556 0.015669136200813227 FLPFSRRK 8 Unmodified _FLPFSRRK_ 0 0 0 REV__ENSG00000168143|ENST00000306858|FAM83B REV__ENSG00000168143|ENST00000306858|FAM83B MSMS UPN48_class_I_Rep_3 7 525.8148193359375 2 525.813993 1049.61343 NaN NaN NaN NaN NaN NaN NaN 50.465 1 54.086 53.586 54.586 3.621 0 0 0 0.40581 1 10241 10241 2.8892 0 1 + 8459 20259 5165 5170 10557 10557 0.09061165533603344 FLPHRLFLE 9 Unmodified _FLPHRLFLE_ 0 0 0 REV__nc|ENSG00000170801|P83110-2|HTRA3 REV__nc|ENSG00000170801|P83110-2|HTRA3 MSMS UPN48_class_I_Rep_3 7 586.3358154296875 2 586.334759 1170.65496 NaN NaN NaN NaN NaN NaN NaN 57.91 1 61.442 60.942 61.942 3.5317 0 0 0 0.39428 1 12501 12501 2.0598 0.21551 1 + 8460 20379 5166 5171 10558 10558 0.07646301502290953 FLPIKKKAH 9 Unmodified _FLPIKKKAH_ 0 0 0 REV__L1MEi_dup4583|chr17:2974373-2974946:+|2.2512204865721976|0.022795361101459|6.63|151.0|26|1|anti-sense REV__L1MEi_dup4583|chr17:2974373-2974946:+|2.2512204865721976|0.022795361101459|6.63|151.0|26|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 540.7063598632812 2 541.347669 1080.68079 0.43044 0.00023302 -0.051913 -2.8103E-05 0.37853 0.00020492 541.8501713621141 70.978 0.077545 74.19 74.162 74.239 3.2113 6 4 2 0 0 0 0.12444 1 17386 17386 2.0598 0.40713 1 40256 + 8461 28806 5167 5172 10559 10559 0.1436719574453491 FLPISSSSYY 10 Unmodified _FLPISSSSYY_ 0 0 0 REV__L1MD2_dup2720|chr4:139315714-139316279:-|1.052641656869998|0.0081353527740534|7.02|149.0|30|1|anti-sense REV__L1MD2_dup2720|chr4:139315714-139316279:-|1.052641656869998|0.0081353527740534|7.02|149.0|30|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.2837524414062 2 582.284597 1162.55464 0.42652 0.00024836 -0.24468 -0.00014247 0.18184 0.00010589 582.284334447219 63.033 0.63297 66.289 65.993 66.626 3.2558 76 42 2 0 0 0 0.46161 2 14999 14999;15008 14.838 0.6908 1 209090 + 8462 27396 5168 5173 10560;10561 10560 -0.020134003420253066 FLPMICIRL 9 Unmodified _FLPMICIRL_ 0 0 0 REV__Charlie25_dup712|chr10:96145560-96145874:-|1.2291703599264172|0.0808268179573953|3.93|148.0|20|3|anti-sense REV__Charlie25_dup712|chr10:96145560-96145874:-|1.2291703599264172|0.0808268179573953|3.93|148.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.2512817382812 2 553.316666 1104.61878 0.3634 0.00020108 -0.83214 -0.00046044 -0.46874 -0.00025936 553.3162396989305 60.197 0.42698 63.362 63.144 63.571 3.1651 30 24 2 0 0 0 0.46434 1 14165 14165 4.3292 0 1 67486 + 8463 17367 5169 5174 10562 10562 0.0706538500953684 FLPMYLYY 8 Unmodified _FLPMYLYY_ 0 0 0 REV__L1MC5a_dup9819|chrX:74248583-74248927:-|2.7414737392598685|0.2305825706827126|3.57|151.0|21|3|anti-sense REV__L1MC5a_dup9819|chrX:74248583-74248927:-|2.7414737392598685|0.2305825706827126|3.57|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.270263671875 2 555.272447 1108.53034 NaN NaN NaN NaN NaN NaN NaN 60.506 1 63.671 63.171 64.171 3.1651 0 0 0 0.4032 1 14213 14213 6.3541 0 1 + 8464 27179 5170 5175 10563 10563 -0.019583320292895223 FLPNAPHQY 9 Unmodified _FLPNAPHQY_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|264|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|264|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|264|1|anti-sense MSMS UPN47_class_I_Rep_1 2 543.769287109375 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 15.904 1 19.401 18.901 19.901 3.4968 0 0 0 0.37476 1 928 928 6.7232 1.8262 1 8465 7994 5171 5176 10564 10564 -0.009914103539585994 FLPSISERSS 10 Unmodified _FLPSISERSS_ 0 0 0 REV__MLT1H_dup443|chr1:148408941-148409341:-|1.0482486811011529|0.0512440978159275|4.35|150.0|12|3|sense REV__MLT1H_dup443|chr1:148408941-148409341:-|1.0482486811011529|0.0512440978159275|4.35|150.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 561.792236328125 2 561.793121 1121.57169 NaN NaN NaN NaN NaN NaN NaN 81.453 1 84.776 84.276 85.276 3.3231 0 0 0 0.53105 1 20384 20384 3.5965 0 1 + 8466 31745 5172 5177 10565 10565 0.0157652026375672 FLQEHNTTL 9 Unmodified _FLQEHNTTL_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 551.7800903320312 2 551.780013 1101.54547 0.38353 0.00021163 -0.070298 -3.8789E-05 0.31323 0.00017284 551.7798541631954 43.784 0.75035 43.784 43.448 44.199 0 163 69 3 0 0 0 0.0058741 5 8776 8702;8739;8776;8808;8846 76.825 32.966 1 679980 8467 425 5173 5178 10566;10567;10568;10569;10570 10568 -0.0012374890770843194 FLQEHNTTL 9 Unmodified _FLQEHNTTL_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 551.7797241210938 2 551.780013 1101.54547 -0.0014577 -8.0432E-07 -0.10733 -5.9223E-05 -0.10879 -6.0027E-05 551.7800252407892 38.711 0.70637 42.376 42.143 42.85 3.6652 89 46 3 0 0 0 0.16559 2 7486 7486;7534 24.021 6.9077 1 123260 8468 425 5173 5178 10571;10572 10571 -0.0012374890770843194 FLQEHNTTL 9 Unmodified _FLQEHNTTL_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 551.77978515625 2 551.780013 1101.54547 -0.05104 -2.8163E-05 0.076771 4.2361E-05 0.025731 1.4198E-05 551.780044106135 39.325 0.64449 42.563 42.18 42.824 3.238 74 44 2 0 0 0 0.19147 2 7719 7719;7759 21.537 7.6309 1 144420 8469 425 5173 5178 10573;10574 10573 -0.0012374890770843194 FLQEHNTTL 9 Unmodified _FLQEHNTTL_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 551.780013 1101.54547 -0.05104 -2.8163E-05 0.076771 4.2361E-05 0.025731 1.4198E-05 551.780044106135 39.325 0.64449 42.563 42.18 42.824 3.238 0.090544 9.1946E-05 NaN 24.021 74 44 2 NaN NaN NaN NaN 0 NaN NaN 0 144420 8470 425 5173 5178 -0.0012374890770843194 FLQLRPEY 8 Unmodified _FLQLRPEY_ 0 0 0 ENSG00000215251|ENST00000380266|FASTKD5 ENSG00000215251|ENST00000380266|FASTKD5 ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS UPN47_class_I_Rep_3 4 533.3080444335938 2 533.290017 1064.56548 0.35688 0.00019032 0.29974 0.00015985 0.65662 0.00035017 533.2902790290143 61.995 0.5818 65.162 64.918 65.499 3.1667 69 42 2 0 0 0 0.82752 1 14746 14746 13.508 0 1 79056 8471 5635 5174 5179 10575 10575 0.03578046822894976 FLQPELVKL 9 Unmodified _FLQPELVKL_ 0 0 0 PSME4|p.V1190Cfs*2|1|0.05|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant;nc|ENSG00000068878|Q14997-2|PSME4;ENSG00000068878.15,PSME4,chr2,-,I35.1,53893800,53895006|26|7.33|2|intron;ENSG00000068878.15,PSME4,chr2,-,I35.1,53893800,53895006|26|7.33|1|intron;ENSG00000068878|ENST00000404125|PSME4 PSME4|p.V1190Cfs*2|1|0.05|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant PSME4|p.V1190Cfs*2|1|0.05|ENSG00000068878|chr2:53897908-53897909|-/A|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 543.831787109375 2 543.831517 1085.64848 0.34007 0.00018494 -0.099713 -5.4227E-05 0.24036 0.00013071 543.8313105950645 66.361 0.67824 69.619 69.414 70.092 3.2588 74 44 2 0 0 0 0.14216 1 16016 16016 26.268 3.5319 1 139620 8472 1054 5175 5180 10576 10576 0.10908363550902322 FLQPIFNFH 9 Unmodified _FLQPIFNFH_ 0 0 0 REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|159|2|anti-sense REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|159|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.3038330078125 2 581.805834 1161.59712 0.48011 0.00027933 -4.0503 -0.0023565 -3.5702 -0.0020772 581.8041175664093 101.54 0.15951 105.26 105.19 105.35 3.7252 29 24 2 0 0 0 0.42249 1 24082 24082 6.7232 0 1 283110 + 8473 24020 5176 5181 10577 10577 0.02278039576822266 FLQPIFNFH 9 Unmodified _FLQPIFNFH_ 0 0 0 REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|159|2|anti-sense REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|159|2|anti-sense MSMS UPN48_class_I_Rep_3 7 581.8035888671875 2 581.805834 1161.59712 NaN NaN NaN NaN NaN NaN NaN 101.95 1 105.73 105.23 106.23 3.776 0 0 0 0.38639 1 24099 24099 3.9444 0 1 + 8474 24020 5176 5181 10578 10578 0.02278039576822266 FLRDEYEY 8 Unmodified _FLRDEYEY_ 0 0 0 REV__L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|42|1|anti-sense REV__L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_1 2 567.759521484375 2 567.758746 1133.50294 NaN NaN NaN NaN NaN NaN NaN 51.246 1 54.839 54.339 55.339 3.5932 0 0 0 0.40527 1 11307 11307 3.5965 0 1 + 8475 28410 5177 5182 10579 10579 -0.05847144035965357 FLRFVWFW 8 Unmodified _FLRFVWFW_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|194|1|anti-sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|194|1|anti-sense MSMS UPN47_class_I_Rep_2 3 600.8206787109375 2 600.821287 1199.62802 NaN NaN NaN NaN NaN NaN NaN 64.454 1 67.71 67.21 68.21 3.2556 0 0 0 0.40364 1 15356 15356 5.7604 0.028577 1 + 8476 29222 5178 5183 10580 10580 0.03619237681755294 FLRHHWLG 8 Unmodified _FLRHHWLG_ 0 0 0 REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 533.2904052734375 2 533.290685 1064.56682 0.34782 0.00018549 -1.1742 -0.00062617 -0.82634 -0.00044068 533.2900658427792 51.818 0.35385 55.34 55.166 55.52 3.5227 41 34 2 0 0 0 0.82752 3 10691 10691;10693;10734 14.582 2.9414 1 193350 + 8477 18662 5179 5184 10581;10582;10583 10581 0.03711725702305557 FLRHHWLG 8 Unmodified _FLRHHWLG_ 0 0 0 REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 533.290685 1064.56682 0.34782 0.00018549 -1.1742 -0.00062617 -0.82634 -0.00044068 533.2900658427792 51.818 0.35385 55.34 55.166 55.52 3.5227 0.036774 -1.5932E-06 NaN 14.582 41 34 2 NaN NaN NaN NaN 0 NaN NaN 0 193350 + 8478 18662 5179 5184 0.03711725702305557 FLRHHWLG 8 Unmodified _FLRHHWLG_ 0 0 0 REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron MULTI-MATCH UPN48_class_I_Rep_2 6 2 533.290685 1064.56682 0.4462 0.00023795 -1.1668 -0.00062227 -0.72064 -0.00038431 533.290348099623 51.599 0.14327 55.267 55.173 55.316 3.6679 -0.036774 6.2205E-06 NaN 14.582 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 151850 + 8479 18662 5179 5184 0.03711725702305557 FLRKLLRHCFL 11 Unmodified _FLRKLLRHCFL_ 0 0 0 REV__L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|71|2|anti-sense REV__L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|71|2|anti-sense MSMS UPN46_class_I_Rep_3 1 482.7957763671875 3 482.623586 1444.84893 NaN NaN NaN NaN NaN NaN NaN 38.291 1 38.291 37.791 38.791 0 0 0 0 0.38417 1 7279 7279 0.094841 0 1 + 8480 26354 5180 5185 10584 10584 0.14429934666713962 FLRLHFVY 8 Unmodified _FLRLHFVY_ 0 0 0 L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|142|2|anti-sense L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|142|2|anti-sense L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|142|2|anti-sense MSMS UPN48_class_I_Rep_2 6 547.8092041015625 2 547.810919 1093.60729 NaN NaN NaN NaN NaN NaN NaN 36.086 1 39.774 39.274 40.274 3.6877 0 0 0 0.40604 1 6028 6028 2.5775 0 1 8481 9826 5181 5186 10585 10585 0.0642264730208808 FLRLLQEW 8 Unmodified _FLRLLQEW_ 0 0 0 REV__HERVH-int_dup3616|chrX:71267184-71268492:+|2.11026418710764|0.1348332208375182|3.97|151.0|65|3|anti-sense REV__HERVH-int_dup3616|chrX:71267184-71268492:+|2.11026418710764|0.1348332208375182|3.97|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_1 2 552.8125 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 20.123 1 23.735 23.235 24.235 3.6118 0 0 0 0.40625 1 1965 1965 2.3027 0.4585 1 + 8482 23668 5182 5187 10586 10586 0.06510326093916774 FLRQQRSL 8 Unmodified _FLRQQRSL_ 0 0 0 Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|68|2|anti-sense Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|68|2|anti-sense Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|68|2|anti-sense MSMS UPN47_class_I_Rep_2 3 524.3077392578125 2 524.306532 1046.59851 NaN NaN NaN NaN NaN NaN NaN 70.116 1 73.399 72.899 73.899 3.2828 0 0 0 0.28403 1 17065 17065 34.402 0 1 8483 33043 5183 5188 10587 10587 0.07707673665595394 FLRTDDAFI 9 Unmodified _FLRTDDAFI_ 0 0 0 ENST00000521189.1_1_8:62212560-62289213:+|nuORF;nc|ENSG00000177182|Q8IUQ0-2|CLVS1;ENSG00000146352|ENST00000275162|CLVS2;ENSG00000177182|ENST00000325897|CLVS1 ENST00000521189.1_1_8:62212560-62289213:+|nuORF ENST00000521189.1_1_8:62212560-62289213:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.285888671875 2 549.284931 1096.55531 0.31056 0.00017058 -0.31342 -0.00017215 -0.0028592 -1.5705E-06 549.2848645177991 46.784 0.9126 50.027 49.73 50.642 3.2439 129 56 3 0 0 0 0.43982 1 9968 9968 5.7319 0 1 252050 8484 3433 5184 5189 10588 10588 0.010894390976545765 FLSAAYSW 8 Unmodified _FLSAAYSW_ 0 0 0 L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|152|1|anti-sense L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|152|1|anti-sense L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|152|1|anti-sense MSMS UPN47_class_I_Rep_2 3 472.7292785644531 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.59 1 95.052 94.552 95.552 3.4613 0 0 0 0.39624 1 22663 22663 9.3474 0 1 8485 9782 5185 5190 10589 10589 -0.030015755396334498 FLSAAYSW 8 Unmodified _FLSAAYSW_ 0 0 0 L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|152|1|anti-sense L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|152|1|anti-sense L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|152|1|anti-sense MSMS UPN47_class_I_Rep_2 3 472.7294006347656 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.738 1 95.203 94.703 95.703 3.4652 0 0 0 0.39624 1 22697 22697 9.3474 0 1 8486 9782 5185 5190 10590 10590 -0.030015755396334498 FLSAVFFAK 9 Unmodified _FLSAVFFAK_ 0 0 0 ENST00000472192.1_1_2:27994644-27995560:+|nuORF;nc|ENSG00000243147|O75394-2|MRPL33;ENSG00000243147|ENST00000296102|MRPL33 ENST00000472192.1_1_2:27994644-27995560:+|nuORF ENST00000472192.1_1_2:27994644-27995560:+|nuORF MSMS UPN48_class_I_Rep_2 6 515.292236328125 2 515.292028 1028.5695 NaN NaN NaN NaN NaN NaN NaN 66.862 1 70.358 69.858 70.858 3.4964 0 0 0 0.13551 1 15308 15308 20.454 1.1966 1 8487 5718 5186 5191 10591 10591 0.05636136316593365 FLSCAYEDL 9 Unmodified _FLSCAYEDL_ 0 0 0 L1MEf_dup2318|chr3:138725342-138726642:-|2.1804720035164245|0.0715027893517811|4.93|151.0|21|2|sense L1MEf_dup2318|chr3:138725342-138726642:-|2.1804720035164245|0.0715027893517811|4.93|151.0|21|2|sense L1MEf_dup2318|chr3:138725342-138726642:-|2.1804720035164245|0.0715027893517811|4.93|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 530.7353515625 2 530.736425 1059.4583 NaN NaN NaN NaN NaN NaN NaN 116.09 1 116.09 115.59 116.59 0 0 0 0 0.39518 1 28728 28728 1.8442 0 1 8488 13261 5187 5192 10592 10592 -0.06905291173666228 FLSDFFFE 8 Unmodified _FLSDFFFE_ 0 0 0 L1MEc_dup16143|chr16:29209356-29209932:+|1.544502939973604|0.0897871592852381|4.1|151.0|36|2|anti-sense L1MEc_dup16143|chr16:29209356-29209932:+|1.544502939973604|0.0897871592852381|4.1|151.0|36|2|anti-sense L1MEc_dup16143|chr16:29209356-29209932:+|1.544502939973604|0.0897871592852381|4.1|151.0|36|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.2407836914062 2 526.242201 1050.46985 NaN NaN NaN NaN NaN NaN NaN 70.823 1 70.823 70.323 71.323 0 0 0 0 0.40364 1 16293 16293 5.7604 1.0044 1 8489 13044 5188 5193 10593 10593 -0.05336726088012256 FLSELQVLH 9 Unmodified _FLSELQVLH_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MSMS UPN48_class_I_Rep_2 6 543.28515625 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 59.547 1 63.034 62.534 63.534 3.4868 0 0 0 0.1724 1 13073 13073 18.135 5.8943 1 8490 4942 5189 5194 10594 10594 0.05278315994382865 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 539.792724609375 2 539.792589 1077.57063 0.33473 0.00018068 0.036847 1.989E-05 0.37157 0.00020057 539.7925195414759 76.717 0.32103 76.717 76.596 76.917 0 60 34 2 0 0 0 0.0064536 3 17933 17892;17908;17933 133.05 67.817 1 228770 8491 5707 5190 5195 10595;10596;10597 10597 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MSMS UPN46_class_I_Rep_3 1 539.7926635742188 2 539.792589 1077.57063 NaN NaN NaN NaN NaN NaN NaN 76.943 1 76.943 76.443 77.443 0 0 0 0 0.070158 1 17966 17966 31.268 6.5945 1 8492 5707 5190 5195 10598 10598 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MSMS UPN46_class_I_Rep_3 1 539.7930297851562 2 539.792589 1077.57063 NaN NaN NaN NaN NaN NaN NaN 77.062 1 77.062 76.562 77.562 0 0 0 0 0.3377 1 17999 17999 8.7454 2.0222 1 8493 5707 5190 5195 10599 10599 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.79248046875 2 539.792589 1077.57063 0.38358 0.00020705 -0.094737 -5.1138E-05 0.28884 0.00015591 539.7924143862001 71.688 0.27316 75.063 74.82 75.094 3.3751 56 21 3 0 0 0 0.0074183 2 17480 17432;17480 110.55 58.284 1 869370 8494 5707 5190 5195 10600;10601 10601 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.7929077148438 2 539.792589 1077.57063 0.38563 0.00020816 -0.14363 -7.7529E-05 0.242 0.00013063 539.7924378853149 71.837 0.83896 75.212 75.094 75.933 3.3751 160 64 4 0 0 0 0.0066947 4 17592 17518;17554;17592;17675 125.53 57.448 1 1049700 8495 5707 5190 5195 10602;10603;10604;10605 10604 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MSMS UPN47_class_I_Rep_1 2 539.7926635742188 2 539.792589 1077.57063 NaN NaN NaN NaN NaN NaN NaN 72.656 1 76.036 75.536 76.536 3.3799 0 0 0 0.056669 1 17793 17793 34.932 8.5908 1 8496 5707 5190 5195 10606 10606 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 539.792724609375 2 539.792589 1077.57063 0.37918 0.00020468 -0.11446 -6.1785E-05 0.26472 0.00014289 539.7924569675062 71.907 0.73598 75.196 74.913 75.649 3.2899 153 63 3 0 0 0 0.0064536 4 17614 17539;17578;17614;17650 133.05 67.817 1 1094900 8497 5707 5190 5195 10607;10608;10609;10610 10609 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 539.7921142578125 2 539.792589 1077.57063 0.38293 0.0002067 -0.25829 -0.00013942 0.12465 6.7284E-05 539.7924753869472 72.269 0.63859 75.566 75.495 76.133 3.2971 74 56 2 0 0 0 0.0064536 6 17689 17689;17726;17769;17810;17844;17854 133.05 67.817 1 385680 8498 5707 5190 5195 10611;10612;10613;10614;10615;10616 10611 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 539.162353515625 2 539.792589 1077.57063 0.38848 0.0002097 0.080848 4.3641E-05 0.46933 0.00025334 539.7925268994868 72.935 0.3263 76.232 76.12 76.446 3.2971 32 26 2 0 0 0 0.11642 1 17902 17902 12.241 2.8575 1 48547 8499 5707 5190 5195 10617 10617 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 539.7926635742188 2 539.792589 1077.57063 0.43112 0.00023271 -0.17227 -9.2992E-05 0.25885 0.00013972 539.7924058566628 72.032 0.97428 75.251 74.8 75.775 3.2188 222 78 4 0 0 0 0.0064536 5 17734 17620;17660;17697;17734;17772 171.09 92.358 1 1045800 8500 5707 5190 5195 10618;10619;10620;10621;10622 10621 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 539.79296875 2 539.792589 1077.57063 0.43269 0.00023356 -0.37979 -0.00020501 0.052896 2.8553E-05 539.7926611151004 72.615 0.22994 75.842 75.783 76.013 3.2271 30 19 3 0 0 0 0.10956 2 17889 17889;17935 32.037 12.676 1 126890 8501 5707 5190 5195 10623;10624 10623 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 539.792589 1077.57063 0.41415 0.00022355 0.03898 2.1041E-05 0.45313 0.0002446 539.7923438088317 72.002 0.037033 75.475 75.441 75.478 3.4732 0.057022 0.00021691 NaN 133.05 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 41563 8502 5707 5190 5195 0.03494305894855643 FLSEWVIII 9 Unmodified _FLSEWVIII_ 0 0 0 REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|304|3|anti-sense REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|304|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.3240966796875 2 560.326068 1118.63758 0.49987 0.00028009 -3.8561 -0.0021607 -3.3562 -0.0018806 560.3238529643514 70.561 0.10419 74.021 73.98 74.084 3.4598 11 8 2 0 0 0 0.35081 1 16461 16461 10.824 0.75 1 96254 + 8503 30244 5191 5196 10625 10625 0.08300961176610144 FLSEWVIII 9 Unmodified _FLSEWVIII_ 0 0 0 REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|304|3|anti-sense REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|304|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 560.326068 1118.63758 0.49987 0.00028009 -3.8561 -0.0021607 -3.3562 -0.0018806 560.3238529643514 70.561 0.10419 74.021 73.98 74.084 3.4598 0.098835 -0.00027942 NaN 10.824 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 96254 + 8504 30244 5191 5196 0.08300961176610144 FLSFKDRI 8 Unmodified _FLSFKDRI_ 0 0 0 AluSx_dup18590|chr3:9456193-9456497:+|1.023289558711494|0.1143880804169461|3.16|151.0|10|1|anti-sense AluSx_dup18590|chr3:9456193-9456497:+|1.023289558711494|0.1143880804169461|3.16|151.0|10|1|anti-sense AluSx_dup18590|chr3:9456193-9456497:+|1.023289558711494|0.1143880804169461|3.16|151.0|10|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.2928466796875 2 513.292559 1024.57057 0.38768 0.00019899 0.047732 2.45E-05 0.43541 0.0002235 513.2924359345736 62.243 0.73526 65.706 65.348 66.083 3.4625 140 56 3 0 0 0 0.82752 1 13881 13881 18.135 0 1 619020 8505 274 5192 5197 10626 10626 0.05926350685513171 FLSFLESQF 9 Unmodified _FLSFLESQF_ 0 0 0 L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|24|2|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|24|2|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 559.2830810546875 2 559.281857 1116.54916 NaN NaN NaN NaN NaN NaN NaN 84.195 1 87.888 87.388 88.388 3.6937 0 0 0 0.34878 1 20037 20037 8.1555 0 1 8506 13161 5193 5198 10627 10627 -0.004450791338513227 FLSFLIWILN 10 Unmodified _FLSFLIWILN_ 0 0 0 L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.5817565917969 3 422.58127 1264.72198 0.10478 4.4277E-05 1.425 0.00060219 1.5298 0.00064647 422.5816898754971 91.906 0.16834 91.906 91.865 92.033 0 21 16 2 0 0 0 0.56444 1 22225 22225 0.69767 0 1 221210 8507 12608 5194 5199 10628 10628 0.10020911993387926 FLSFLIWILN 10 Unmodified _FLSFLIWILN_ 0 0 0 L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 422.58127 1264.72198 0.10478 4.4277E-05 1.425 0.00060219 1.5298 0.00064647 422.5816898754971 91.906 0.16834 91.906 91.865 92.033 0 -0.02102 0.00012998 NaN 0.69767 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 221210 8508 12608 5194 5199 0.10020911993387926 FLSFLIWILN 10 Unmodified _FLSFLIWILN_ 0 0 0 L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense L1ME3_dup8316|chr18:76834961-76835778:-|1.0061912570938107|0.0156723639575268|6.0|151.0|34|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.58127 1264.72198 -0.10682 -4.5139E-05 1.2797 0.00054076 1.1728 0.00049562 422.5817804484774 88.326 0.35509 91.948 91.824 92.179 3.6229 0.02102 -5.4307E-05 NaN 0.69767 66 45 2 NaN NaN NaN NaN 0 NaN NaN 0 120070 8509 12608 5194 5199 0.10020911993387926 FLSFMNTEL 9 Oxidation (M) _FLSFM(Oxidation (M))NTEL_ FLSFM(1)NTEL FLSFM(83)NTEL 0 0 1 ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF ENSG00000163191|ENST00000271638|S100A11 ENSG00000163191|ENST00000271638|S100A11 MULTI-MSMS UPN47_class_I_Rep_1 2 559.2655029296875 2 559.26535 1116.51615 0.39085 0.00021859 -0.070056 -3.918E-05 0.32079 0.00017941 559.2652414983811 73.792 1.1347 77.178 76.52 77.655 3.3861 186 104 3 0 0 0 0.0060693 3 18030 18030;18063;18133 82.529 38.671 1 449580 8510 3990 5195 5200 10629;10630;10631 10629 125 -0.03745029248239007 FLSFMNTEL 9 Oxidation (M) _FLSFM(Oxidation (M))NTEL_ FLSFM(1)NTEL FLSFM(63)NTEL 0 0 1 ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF ENSG00000163191|ENST00000271638|S100A11 ENSG00000163191|ENST00000271638|S100A11 MULTI-MSMS UPN47_class_I_Rep_2 3 559.2653198242188 2 559.26535 1116.51615 0.4419 0.00024714 -0.17589 -9.8369E-05 0.26601 0.00014877 559.265195543994 73.778 0.57648 77.083 76.684 77.261 3.3048 80 52 2 0 0 0 0.0203 2 18099 18099;18134 63.227 27.1 1 503000 8511 3990 5195 5200 10632;10633 10632 125 -0.03745029248239007 FLSFMNTEL 9 Oxidation (M) _FLSFM(Oxidation (M))NTEL_ FLSFM(1)NTEL FLSFM(78)NTEL 0 0 1 ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF ENSG00000163191|ENST00000271638|S100A11 ENSG00000163191|ENST00000271638|S100A11 MULTI-MSMS UPN47_class_I_Rep_2 3 559.2651977539062 2 559.26535 1116.51615 0.44568 0.00024925 -0.19377 -0.00010837 0.25191 0.00014088 559.2651145631 73.964 1.033 77.269 76.796 77.829 3.3048 223 103 3 0 0 0 0.0055684 1 18240 18240 78.06 34.202 1 404690 8512 3990 5195 5200 10634 10634 125 -0.03745029248239007 FLSFMNTEL 9 Oxidation (M) _FLSFM(Oxidation (M))NTEL_ FLSFM(1)NTEL FLSFM(90)NTEL 0 0 1 ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF ENSG00000163191|ENST00000271638|S100A11 ENSG00000163191|ENST00000271638|S100A11 MULTI-MSMS UPN47_class_I_Rep_3 4 559.2656860351562 2 559.26535 1116.51615 0.45428 0.00025406 -0.098083 -5.4854E-05 0.3562 0.00019921 559.2651454532736 74.1 1.169 77.336 76.697 77.866 3.2363 244 120 3 0 0 0 0.0060665 2 18329 18296;18329 90.135 44.114 1 362460 8513 3990 5195 5200 10635;10636 10636 125 -0.03745029248239007 FLSLPRPLS 9 Unmodified _FLSLPRPLS_ 0 0 0 REV__ENST00000409993.6_1_11:118967515-118967695:-|nuORF REV__ENST00000409993.6_1_11:118967515-118967695:-|nuORF MSMS UPN48_class_I_Rep_2 6 515.3062133789062 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 87.718 1 91.446 90.946 91.946 3.7279 0 0 0 0.39036 1 20875 20875 2.9952 0 1 + 8514 22189 5196 5201 10637 10637 0.08870923719587154 FLSNIPFQL 9 Unmodified _FLSNIPFQL_ 0 0 0 REV__MSTB-int_dup717|chr14:20270460-20271819:-|1.043348711583581|0.3640849558567025|1.52|151.0|81|3|anti-sense REV__MSTB-int_dup717|chr14:20270460-20271819:-|1.043348711583581|0.3640849558567025|1.52|151.0|81|3|anti-sense MSMS UPN47_class_I_Rep_1 2 539.79248046875 2 539.800217 1077.58588 NaN NaN NaN NaN NaN NaN NaN 72.136 1 75.516 75.016 76.016 3.3799 0 0 0 0.10315 1 17632 17632 24.021 1.2843 1 + 8515 31897 5197 5202 10638 10638 0.05019217482708882 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_1 2 598.8013305664062 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.259 1 65.627 65.127 66.127 3.3681 0 0 0 0.022703 1 14656 14656 32.037 8.2477 1 8516 8010 5198 5203 10639 10639 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_1 2 598.8011474609375 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.42 1 65.788 65.288 66.288 3.3681 0 0 0 0.23778 1 14704 14704 15.739 3.498 1 8517 8010 5198 5203 10640 10640 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.80126953125 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.496 1 65.752 65.252 66.252 3.2558 0 0 0 0.00078396 1 14763 14763 38.615 5.1698 1 8518 8010 5198 5203 10641 10641 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.8010864257812 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.623 1 65.879 65.379 66.379 3.2558 0 0 0 0.067401 1 14801 14801 26.021 7.8744 1 8519 8010 5198 5203 10642 10642 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.8012084960938 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.75 1 66.006 65.506 66.506 3.2558 0 0 0 0.23778 1 14840 14840 15.739 2.866 1 8520 8010 5198 5203 10643 10643 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.8004760742188 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.918 1 66.174 65.674 66.674 3.2558 0 0 0 0.29037 1 14892 14892 12.873 0.63195 1 8521 8010 5198 5203 10644 10644 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_3 4 598.8013305664062 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.619 1 65.789 65.289 66.289 3.1698 0 0 0 0.00019181 1 14859 14859 45.74 9.2337 1 8522 8010 5198 5203 10645 10645 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_3 4 598.8012084960938 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.822 1 65.991 65.491 66.491 3.1698 0 0 0 0.23778 1 14921 14921 15.739 3.498 1 8523 8010 5198 5203 10646 10646 0.0007373356318112201 FLSPSTQVSKC 11 Unmodified _FLSPSTQVSKC_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_3 4 598.80126953125 2 598.802631 1195.59071 NaN NaN NaN NaN NaN NaN NaN 62.946 1 66.116 65.616 66.616 3.1698 0 0 0 0.23778 1 14959 14959 15.739 3.498 1 8524 8010 5198 5203 10647 10647 0.0007373356318112201 FLSPTIHPGP 10 Unmodified _FLSPTIHPGP_ 0 0 0 MER74B_dup811|chr17:72915132-72915529:+|1.1727170658243744|0.0074101663627715|7.31|151.0|11|3|sense MER74B_dup811|chr17:72915132-72915529:+|1.1727170658243744|0.0074101663627715|7.31|151.0|11|3|sense MER74B_dup811|chr17:72915132-72915529:+|1.1727170658243744|0.0074101663627715|7.31|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 533.3081665039062 2 533.290017 1064.56548 0.37656 0.00020082 -0.17613 -9.393E-05 0.20043 0.00010689 533.2899709189446 61.713 0.66304 65.081 64.642 65.305 3.3681 60 48 2 0 0 0 0.38932 1 14512 14512 20.454 7.9221 1 88023 8525 16207 5199 5204 10648 10648 0.03578046822894976 FLSRKYVI 8 Unmodified _FLSRKYVI_ 0 0 0 ENST00000597244.1_1_19:16688496-16688601:-|nuORF ENST00000597244.1_1_19:16688496-16688601:-|nuORF ENST00000597244.1_1_19:16688496-16688601:-|nuORF MSMS UPN48_class_I_Rep_2 6 513.2918701171875 2 513.310752 1024.60695 NaN NaN NaN NaN NaN NaN NaN 61.88 1 65.353 64.853 65.853 3.4738 0 0 0 0.38547 1 13783 13783 13.508 0 1 8526 7649 5200 5205 10649 10649 0.09563227582225409 FLSRTKKF 8 Unmodified _FLSRTKKF_ 0 0 0 REV__MER50-int_dup156|chr6:11108230-11111700:-|1.5883141505235747|0.0370443883540618|5.42|151.0|193|3|anti-sense REV__MER50-int_dup156|chr6:11108230-11111700:-|1.5883141505235747|0.0370443883540618|5.42|151.0|193|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.8065185546875 2 513.808377 1025.6022 0.26961 0.00013853 -2.1962 -0.0011284 -1.9266 -0.00098991 513.8066037716496 61.54 0.56724 64.908 64.711 65.278 3.3681 67 40 2 0 0 0 0.82752 1 14502 14502 13.508 4.1604 1 297320 + 8527 31374 5201 5206 10650 10650 0.0904234343945518 FLSSPHPFRS 10 Unmodified _FLSSPHPFRS_ 0 0 0 Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|374|3|anti-sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|374|3|anti-sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|374|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.8037109375 2 587.803823 1173.59309 0.41928 0.00024646 0.26827 0.00015769 0.68756 0.00040415 587.8039232327768 43.519 1.3731 47.029 46.637 48.01 3.5103 240 108 3 0 0 0 0.56078 1 8401 8401 3.2813 0.78282 1 796830 8528 7974 5202 5207 10651 10651 0.013239500831332407 FLSSPHPFRS 10 Unmodified _FLSSPHPFRS_ 0 0 0 Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|374|3|anti-sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|374|3|anti-sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|374|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.8035278320312 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.56078 1 8378 8378 3.2813 3.2813 1 966840 8529 7974 5202 5207 10652 10652 0.013239500831332407 FLSSTIQAI 9 Unmodified _FLSSTIQAI_ 0 0 0 REV__ENSG00000276023|ENST00000617516|DUSP14 REV__ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS UPN47_class_I_Rep_1 2 490.2775573730469 2 490.276575 978.538597 0.12108 5.9361E-05 0.33928 0.00016634 0.46035 0.0002257 490.27645338350305 69.898 0.32706 73.266 73.13 73.457 3.3678 53 30 2 0 0 0 0.20276 1 16955 16955 20.454 0 1 86617 + 8530 21434 5203 5208 10653 10653 0.04846938211710494 FLSSTIQAI 9 Unmodified _FLSSTIQAI_ 0 0 0 REV__ENSG00000276023|ENST00000617516|DUSP14 REV__ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS UPN47_class_I_Rep_3 4 490.2762756347656 2 490.276575 978.538597 0.19669 9.6433E-05 0.27973 0.00013714 0.47642 0.00023358 490.2764492626702 70.11 0.53617 73.321 72.973 73.509 3.2113 65 42 2 0 0 0 0.37599 1 17166 17166 9.3831 0 1 102630 + 8531 21434 5203 5208 10654 10654 0.04846938211710494 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS UPN47_class_I_Rep_1 2 510.78985595703125 2 510.78985 1019.56515 0.24923 0.0001273 -0.082812 -4.2299E-05 0.16642 8.5004E-05 510.7896865139155 75.934 0.71521 79.337 79.024 79.739 3.4034 150 67 3 0 0 0 0.006828 1 18797 18797 72.968 6.5113 1 324460 8532 4644 5204 5209 10655 10655 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS UPN47_class_I_Rep_1 2 510.7900085449219 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.155 1 79.558 79.058 80.058 3.4034 0 0 0 0.0013646 1 18831 18831 60.074 0 1 8533 4644 5204 5209 10656 10656 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS UPN47_class_I_Rep_1 2 510.79052734375 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.28 1 79.695 79.195 80.195 3.4149 0 0 0 5.0148E-07 1 18870 18870 72.968 0 1 8534 4644 5204 5209 10657 10657 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7896423339844 2 510.78985 1019.56515 0.15046 7.6853E-05 -0.14189 -7.2475E-05 0.0085718 4.3784E-06 510.7897306376402 76.082 0.43433 79.404 79.072 79.506 3.3216 101 43 3 0 0 0 0.015095 1 18806 18806 103.35 7.2426 1 496530 8535 4644 5204 5209 10658 10658 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7901306152344 2 510.78985 1019.56515 0.15283 7.8064E-05 -0.083512 -4.2657E-05 0.069319 3.5407E-05 510.7898191064733 76.253 0.17615 79.575 79.506 79.683 3.3216 30 16 2 0 0 0 0.0064763 1 18879 18879 88.954 0 1 304850 8536 4644 5204 5209 10659 10659 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7895202636719 2 510.78985 1019.56515 0.15482 7.9078E-05 0.03017 1.5411E-05 0.18499 9.4489E-05 510.78981237177146 76.469 0.24475 79.791 79.657 79.902 3.3216 37 23 2 0 0 0 0.006828 2 18930 18915;18930 72.968 0 1 97331 8537 4644 5204 5209 10660;10661 10661 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS UPN47_class_I_Rep_2 3 510.7902526855469 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.589 1 79.921 79.421 80.421 3.3315 0 0 0 0.058622 1 18963 18963 34.402 0 1 8538 4644 5204 5209 10662 10662 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS UPN47_class_I_Rep_3 4 510.7897033691406 2 510.78985 1019.56515 0.28357 0.00014484 -0.084607 -4.3216E-05 0.19896 0.00010163 510.7897238403108 76.167 0.88718 79.424 79.079 79.967 3.2573 205 88 3 0 0 0 0.0060693 4 18912 18877;18912;18986;19020 82.529 6.7685 1 368970 8539 4644 5204 5209 10663;10664;10665;10666 10664 0.056146271030456774 FLSSVIQNL 9 Unmodified _FLSSVIQNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS UPN47_class_I_Rep_3 4 510.79046630859375 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.676 1 79.945 79.445 80.445 3.269 0 0 0 0.072484 1 19071 19071 30.637 0 1 8540 4644 5204 5209 10667 10667 0.056146271030456774 FLSTINVGL 9 Unmodified _FLSTINVGL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|2|intron ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 482.2793884277344 2 482.279118 962.543683 0.14038 6.7703E-05 0.034728 1.6748E-05 0.17511 8.4451E-05 482.27908051494694 75.929 0.67421 79.332 79.058 79.732 3.4034 115 64 3 0 0 0 0.062142 3 18752 18711;18752;18793 43.772 17.504 1 287950 8541 3169 5205 5210 10668;10669;10670 10669 0.06091242074330694 FLSTINVGL 9 Unmodified _FLSTINVGL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|2|intron ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MSMS UPN47_class_I_Rep_1 2 482.2793273925781 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 76.146 1 79.549 79.049 80.049 3.4034 0 0 0 0.064572 1 18828 18828 32.786 13.529 1 8542 3169 5205 5210 10671 10671 0.06091242074330694 FLSTINVGL 9 Unmodified _FLSTINVGL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|2|intron ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MSMS UPN47_class_I_Rep_1 2 482.279296875 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 76.272 1 79.687 79.187 80.187 3.4149 0 0 0 0.2408 1 18867 18867 13.906 3.0821 1 8543 3169 5205 5210 10672 10672 0.06091242074330694 FLSTINVGL 9 Unmodified _FLSTINVGL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|2|intron ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.2792053222656 2 482.279118 962.543683 0.21805 0.00010516 -0.055943 -2.698E-05 0.16211 7.818E-05 482.2790295633284 76.087 0.67722 79.409 78.934 79.611 3.3216 124 67 2 0 0 0 0.097406 3 18800 18763;18800;18836 34.402 11.665 1 246900 8544 3169 5205 5210 10673;10674;10675 10674 0.06091242074330694 FLSTINVGL 9 Unmodified _FLSTINVGL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|2|intron ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 482.27935791015625 2 482.279118 962.543683 0.12467 6.0126E-05 -0.090885 -4.3832E-05 0.033786 1.6294E-05 482.2790499555477 76.154 0.73801 79.411 79.151 79.889 3.2573 106 72 2 0 0 0 0.14216 2 18913 18878;18913 26.268 12.362 1 197880 8545 3169 5205 5210 10676;10677 10677 0.06091242074330694 FLSTSIAQL 9 Unmodified _FLSTSIAQL_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS UPN47_class_I_Rep_3 4 490.77801513671875 2 490.276575 978.538597 0.19669 9.6433E-05 0.27973 0.00013714 0.47642 0.00023358 490.2764492626702 70.11 0.53617 73.321 72.973 73.509 3.2113 65 42 2 0 0 0 0.023254 1 17120 17120 61.357 9.0891 1 102630 8546 2420 5206 5211 10678 10678 0.04846938211687757 FLSTSVQLYF 10 Unmodified _FLSTSVQLYF_ 0 0 0 REV__L1MCa_dup7172|chr20:3338953-3339751:-|2.293043989908772|0.0876398517877629|4.71|151.0|48|3|anti-sense REV__L1MCa_dup7172|chr20:3338953-3339751:-|2.293043989908772|0.0876398517877629|4.71|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_1 2 602.8170776367188 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 63.567 1 66.927 66.427 67.427 3.3595 0 0 0 0.53105 1 15049 15049 2.7352 0 1 + 8547 27227 5207 5212 10679 10679 0.023911654459880083 FLSVRVQE 8 Unmodified _FLSVRVQE_ 0 0 0 REV__ENSG00000087157.19,PGS1,chr17,+,I8.1,78400856,78403567|38|6.56|1|intron REV__ENSG00000087157.19,PGS1,chr17,+,I8.1,78400856,78403567|38|6.56|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 489.2743835449219 2 489.274367 976.53418 0.062894 3.0772E-05 0.13948 6.8244E-05 0.20237 9.9016E-05 489.2744046343693 45.422 0.50837 48.775 48.671 49.179 3.3535 38 32 2 0 0 0 0.82752 1 9598 9598 6.7232 0 1 66197 + 8548 17974 5208 5213 10680 10680 0.04497473788808293 FLSYKRIV 8 Unmodified _FLSYKRIV_ 0 0 0 LTR12F_dup566|chr17:61237098-61237651:+|1.139019775661345|0.0271342489119216|5.39|151.0|1|1|sense LTR12F_dup566|chr17:61237098-61237651:+|1.139019775661345|0.0271342489119216|5.39|151.0|1|1|sense LTR12F_dup566|chr17:61237098-61237651:+|1.139019775661345|0.0271342489119216|5.39|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 513.2918090820312 2 513.310752 1024.60695 NaN NaN NaN NaN NaN NaN NaN 61.697 1 65.208 64.708 65.708 3.5104 0 0 0 0.39408 1 13656 13656 10.183 0 1 8549 15554 5209 5214 10681 10681 0.09563227582225409 FLTCCWILL 9 Unmodified _FLTCCWILL_ 0 0 0 L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|180|2|anti-sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|180|2|anti-sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|180|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2889404296875 2 556.287574 1110.56059 0.50965 0.00028351 0.88563 0.00049267 1.3953 0.00077618 556.2879561380222 59.258 1.3933 62.531 62.057 63.45 3.2731 214 89 3 0 0 0 0.081857 1 13838 13838 38.151 0 1 1213100 8550 15391 5210 5215 10682 10682 0.009737033642750248 FLTEHLHVGF 10 Unmodified _FLTEHLHVGF_ 0 0 0 REV__L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|209|1|anti-sense REV__L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|209|1|anti-sense MSMS UPN47_class_I_Rep_2 3 600.31396484375 2 600.314023 1198.61349 NaN NaN NaN NaN NaN NaN NaN 58.628 1 61.91 61.41 62.41 3.2818 0 0 0 0.53105 1 13586 13586 1.6526 0.17072 1 + 8551 30405 5211 5216 10683 10683 0.022131207429310962 FLTFYHYK 8 Unmodified _FLTFYHYK_ 0 0 0 L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|88|2|anti-sense L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|88|2|anti-sense L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|88|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 559.761474609375 2 559.78711 1117.55967 0.50594 0.00028322 0.84664 0.00047394 1.3526 0.00075715 560.289817121938 68.614 0.085541 72.066 72.025 72.111 3.4517 11 8 2 0 0 0 0.72333 1 15855 15855 14.582 3.4672 1 109270 8552 14093 5212 5217 10684 10684 0.005589483112316884 FLTKQEILL 9 Unmodified _FLTKQEILL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN47_class_I_Rep_1 2 552.8364868164062 2 552.8368 1103.65905 0.43077 0.00023815 -0.49581 -0.0002741 -0.065031 -3.5952E-05 552.8363992803464 61.057 0.9459 64.439 64.074 65.02 3.3815 165 74 3 0 0 0 0.034404 5 14271 14224;14230;14271;14309;14348 55.235 18.728 1 419350 8553 5082 5213 5218 10685;10686;10687;10688;10689 10687 0.1113634620535322 FLTKQEILL 9 Unmodified _FLTKQEILL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN47_class_I_Rep_2 3 552.8367309570312 2 552.8368 1103.65905 0.45741 0.00025287 -0.47943 -0.00026505 -0.022021 -1.2174E-05 552.8364651979159 61.354 1.0369 64.62 64.292 65.329 3.2654 145 71 3 0 0 0 0.053261 2 14408 14408;14452 47.594 14.809 1 481630 8554 5082 5213 5218 10690;10691 10690 0.1113634620535322 FLTKQEILL 9 Unmodified _FLTKQEILL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS UPN47_class_I_Rep_3 4 552.8367309570312 2 552.8368 1103.65905 0.38424 0.00021242 -0.25386 -0.00014034 0.13038 7.2081E-05 552.8365510394389 61.495 0.94102 64.662 64.297 65.238 3.1667 154 71 3 0 0 0 0.074399 3 14530 14445;14490;14530 39.95 7.164 1 410410 8555 5082 5213 5218 10692;10693;10694 10694 0.1113634620535322 FLTLHAHHL 9 Unmodified _FLTLHAHHL_ 0 0 0 nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B nc|ENSG00000130939|O95155-3|UBE4B nc|ENSG00000130939|O95155-3|UBE4B MULTI-SECPEP UPN47_class_I_Rep_1 2 544.3306274414062 2 544.803626 1087.5927 0.38495 0.00020972 -1.1991 -0.00065327 -0.81414 -0.00044355 544.802795506114 67.044 0.14066 70.405 70.363 70.504 3.3611 14 10 2 0 0 0 0.12281 1 16115 16115 4.3292 0.38484 1 37829 8556 2686 5214 5219 10695 10695 0.0524057515392542 FLTPTLEENF 10 Unmodified _FLTPTLEENF_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|58|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|58|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 605.8043823242188 2 605.803154 1209.59175 0.52016 0.00031512 0.7715 0.00046738 1.2917 0.00078249 605.8036970631803 55.965 0.42172 55.965 55.696 56.117 0 85 47 2 0 0 0 0.53843 2 12166 12166;12205 7.609 0.88579 1 321030 + 8557 25662 5215 5220 10696;10697 10696 -0.004657287962800183 FLTPTLEENF 10 Unmodified _FLTPTLEENF_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|58|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|58|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 605.8040771484375 2 605.803154 1209.59175 0.43264 0.0002621 0.65637 0.00039763 1.089 0.00065973 605.8039366503004 51.017 0.75568 54.627 54.283 55.038 3.6105 111 49 3 0 0 0 0.46994 2 10428 10428;10470 16.149 16.149 1 447470 + 8558 25662 5215 5220 10698;10699 10698 -0.004657287962800183 FLTVHDAILY 10 Unmodified _FLTVHDAILY_ 0 0 0 nc|ENSG00000091137|O43511-2|SLC26A4;ENSG00000091137|ENST00000644269|SLC26A4 nc|ENSG00000091137|O43511-2|SLC26A4 nc|ENSG00000091137|O43511-2|SLC26A4 MSMS UPN47_class_I_Rep_2 3 596.3222045898438 2 596.324057 1190.63356 NaN NaN NaN NaN NaN NaN NaN 51.47 1 54.809 54.309 55.309 3.3386 0 0 0 0.53105 1 11404 11404 30.637 3.7529 1 8559 1368 5216 5221 10700 10700 0.04586871682909077 FLTYEAAAPHF 11 Unmodified _FLTYEAAAPHF_ 0 0 0 REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 633.8114624023438 2 633.811313 1265.60807 0.45374 0.00028758 -0.073045 -4.6297E-05 0.38069 0.00024129 633.8111845873922 62.256 0.63668 65.624 65.372 66.009 3.3681 56 40 2 0 0 0 0.31897 3 14658 14658;14700;14747 13.906 5.1606 1 104730 + 8560 25374 5217 5222 10701;10702;10703 10701 -0.014106028395644898 FLTYEAAAPHF 11 Unmodified _FLTYEAAAPHF_ 0 0 0 REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 633.8104248046875 2 633.811313 1265.60807 0.43669 0.00027678 0.099586 6.3119E-05 0.53628 0.0003399 633.8112008711408 62.568 0.53328 65.824 65.575 66.108 3.2558 54 32 2 0 0 0 0.31897 1 14781 14781 13.906 4.5229 1 86969 + 8561 25374 5217 5222 10704 10704 -0.014106028395644898 FLTYEAAAPHF 11 Unmodified _FLTYEAAAPHF_ 0 0 0 REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.3126831054688 2 633.811313 1265.60807 0.41724 0.00026445 0.041912 2.6565E-05 0.45915 0.00029102 633.8112675129375 62.765 0.56177 65.934 65.578 66.14 3.1698 48 30 2 0 0 0 0.57992 1 14846 14846 5.7319 2.7366 1 90520 + 8562 25374 5217 5222 10705 10705 -0.014106028395644898 FLTYEAAAPHF 11 Unmodified _FLTYEAAAPHF_ 0 0 0 REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 633.811767578125 2 633.811313 1265.60807 0.57603 0.00036509 -0.12146 -7.6981E-05 0.45457 0.00028811 634.3127235506796 62.612 0.66845 66.075 65.761 66.429 3.4625 72 45 2 0 0 0 0.29515 4 14048 13970;14011;14048;14106 22.736 9.6938 1 169780 + 8563 25374 5217 5222 10706;10707;10708;10709 10708 -0.014106028395644898 FLTYEAAAPHF 11 Unmodified _FLTYEAAAPHF_ 0 0 0 REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 634.313720703125 2 633.811313 1265.60807 0.54688 0.00034662 -0.27297 -0.00017301 0.27391 0.00017361 633.8112136851904 62.516 0.5686 65.99 65.718 66.287 3.4738 82 38 3 0 0 0 0.27364 4 13941 13941;13963;14003;14036 18.146 9.4009 1 176540 + 8564 25374 5217 5222 10710;10711;10712;10713 10710 -0.014106028395644898 FLTYEAAAPHF 11 Unmodified _FLTYEAAAPHF_ 0 0 0 REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense REV__L1MA5_dup25|chr1:36049636-36050200:+|1.7817059283177856|0.0559953128226397|4.99|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.8108520507812 2 633.811313 1265.60807 0.62823 0.00039818 -0.38918 -0.00024667 0.23906 0.00015152 633.81109391158 62.406 0.71712 65.917 65.554 66.271 3.5104 69 55 2 0 0 0 0.27364 3 13816 13816;13854;13893 24.021 13.947 1 195730 + 8565 25374 5217 5222 10714;10715;10716 10714 -0.014106028395644898 FLTYWSQL 8 Unmodified _FLTYWSQL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MSMS UPN46_class_I_Rep_3 1 529.2684936523438 2 529.271293 1056.52803 NaN NaN NaN NaN NaN NaN NaN 66.95 1 66.95 66.45 67.45 0 0 0 0 0.4044 1 15217 15217 4.756 0.42677 1 + 8566 19924 5218 5223 10717 10717 0.002029555572789832 FLVCLFCCFY 10 Unmodified _FLVCLFCCFY_ 0 0 0 L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|443|3|anti-sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|443|3|anti-sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|443|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 629.7791137695312 2 629.278892 1256.54323 0.41484 0.00026105 -1.7196 -0.0010821 -1.3048 -0.00082106 629.277847544335 65.441 0.3915 68.797 68.562 68.953 3.3557 29 19 2 0 0 0 0.49259 2 15593 15559;15593 12.532 0 1 90988 8567 14062 5219 5224 10718;10719 10719 -0.07477960233040903 FLVCLFCCFY 10 Unmodified _FLVCLFCCFY_ 0 0 0 L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|443|3|anti-sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|443|3|anti-sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|443|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 629.2788696289062 2 629.278892 1256.54323 0.4429 0.00027871 -1.365 -0.00085897 -0.92211 -0.00058026 629.2780703327537 65.684 0.47571 68.864 68.591 69.067 3.1795 41 30 2 0 0 0 0.49259 1 15729 15729 12.532 0 1 68960 8568 14062 5219 5224 10720 10720 -0.07477960233040903 FLVEHNLVL 9 Unmodified _FLVEHNLVL_ 0 0 0 KDM3A|p.E1039Rfs*8|1|0.15|ENSG00000115548|chr2:86484956-86484957|-/A|frameshift_variant;ENSG00000115548|ENST00000312912|KDM3A KDM3A|p.E1039Rfs*8|1|0.15|ENSG00000115548|chr2:86484956-86484957|-/A|frameshift_variant KDM3A|p.E1039Rfs*8|1|0.15|ENSG00000115548|chr2:86484956-86484957|-/A|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 542.3137817382812 2 542.313492 1082.61243 0.41553 0.00022535 0.41052 0.00022263 0.82605 0.00044798 542.3136333269168 64.334 0.57506 67.508 67.195 67.77 3.1741 74 39 3 0 0 0 0.30034 1 15417 15417 13.906 0 1 204980 8569 2131 5220 5225 10721 10721 0.07442906374035374 FLVEVFHLH 9 Unmodified _FLVEVFHLH_ 0 0 0 L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|58|1|anti-sense L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|58|1|anti-sense L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_3 7 570.8114624023438 2 570.813659 1139.61277 NaN NaN NaN NaN NaN NaN NaN 43.533 1 47.172 46.672 47.672 3.6385 0 0 0 0.39428 1 8112 8112 2.0598 0 1 8570 14997 5221 5226 10722 10722 0.04854326093891359 FLVFKCCH 8 Unmodified _FLVFKCCH_ 0 0 0 MER102b_dup2256|chr10:71764411-71764747:+|2.0199830640131062|0.2496650576992957|3.02|151.0|17|2|anti-sense MER102b_dup2256|chr10:71764411-71764747:+|2.0199830640131062|0.2496650576992957|3.02|151.0|17|2|anti-sense MER102b_dup2256|chr10:71764411-71764747:+|2.0199830640131062|0.2496650576992957|3.02|151.0|17|2|anti-sense MSMS UPN48_class_I_Rep_2 6 498.7432861328125 2 498.743334 995.472114 NaN NaN NaN NaN NaN NaN NaN 23.389 1 27.032 26.532 27.532 3.6432 0 0 0 0.40738 1 2544 2544 0.79363 0 1 8571 15758 5222 5227 10723 10723 -0.025802921555396097 FLVFPRSLLW 10 Unmodified _FLVFPRSLLW_ 0 0 0 REV__ENST00000378204.6_1_8:119123202-119123454:-|nuORF REV__ENST00000378204.6_1_8:119123202-119123454:-|nuORF MSMS UPN46_class_I_Rep_3 1 639.373779296875 2 639.373884 1276.73321 NaN NaN NaN NaN NaN NaN NaN 25.383 1 25.383 24.883 25.883 0 0 0 0 0.53105 1 3474 3474 1.6526 0.32309 1 + 8572 22028 5223 5228 10724 10724 0.10591734087506666 FLVGFLPF 8 Unmodified _FLVGFLPF_ 0 0 0 REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|82|2|anti-sense REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|82|2|anti-sense MSMS UPN48_class_I_Rep_1 5 470.2700500488281 2 470.270564 938.526576 NaN NaN NaN NaN NaN NaN NaN 52.271 1 55.793 55.293 56.293 3.5227 0 0 0 0.40738 1 10856 10856 0.79363 0 1 + 8573 24226 5224 5229 10725 10725 0.05485366259165403 FLVGWDIFL 9 Unmodified _FLVGWDIFL_ 0 0 0 REV__L1PA15_dup3914|chr8:54071630-54072540:+|1.44460706731545|0.0663034782771652|4.45|151.0|52|3|anti-sense REV__L1PA15_dup3914|chr8:54071630-54072540:+|1.44460706731545|0.0663034782771652|4.45|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_2 3 555.3047485351562 2 555.305136 1108.59572 NaN NaN NaN NaN NaN NaN NaN 60.751 1 64.016 63.516 64.516 3.2654 0 0 0 0.1074 1 14235 14235 23.148 0 1 + 8574 29242 5225 5230 10726 10726 0.04576405488069213 FLVKPKSEI 9 Unmodified _FLVKPKSEI_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MSMS UPN47_class_I_Rep_1 2 530.8213500976562 2 530.823692 1059.63283 NaN NaN NaN NaN NaN NaN NaN 73.975 1 77.361 76.861 77.861 3.3861 0 0 0 0.39428 1 18187 18187 2.0598 0.21551 1 + 8575 17643 5226 5231 10727 10727 0.10540077033851958 FLVLCFDYI 9 Unmodified _FLVLCFDYI_ 0 0 0 REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|115|2|anti-sense REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_1 2 566.789794921875 2 566.791004 1131.56745 NaN NaN NaN NaN NaN NaN NaN 67.199 1 70.56 70.06 71.06 3.3611 0 0 0 0.35339 1 16144 16144 7.9102 0 1 + 8576 24326 5227 5232 10728 10728 0.006933395164878675 FLVLCMWLL 9 Unmodified _FLVLCMWLL_ 0 0 0 ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|3|1|sense ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|3|1|sense ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 569.3068237304688 2 569.313592 1136.61263 NaN NaN NaN NaN NaN NaN NaN 66.611 1 66.611 66.111 67.111 0 0 0 0 0.381 1 15122 15122 5.2307 0 1 8577 7726 5228 5233 10729 10729 0.04978866778037627 FLVLMGLYPL 10 Unmodified _FLVLMGLYPL_ 0 0 0 REV__LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|6|1|sense REV__LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 583.3362426757812 2 583.338121 1164.66169 NaN NaN NaN NaN NaN NaN NaN 70.024 1 73.537 73.037 74.037 3.5128 0 0 0 0.53105 1 16174 16174 1.8442 0.36234 1 + 8578 30789 5229 5234 10730 10730 0.08594478338613953 FLVLQLTAA 9 Unmodified _FLVLQLTAA_ 0 0 0 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS UPN47_class_I_Rep_2 3 488.2974548339844 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 58.982 1 62.264 61.764 62.764 3.2818 0 0 0 0.3967 1 13695 13695 1.4819 0 1 + 8579 31952 5230 5235 10731 10731 0.09176118971015512 FLVLQLTAA 9 Unmodified _FLVLQLTAA_ 0 0 0 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 REV__nc|ENSG00000105778|Q8NBF6-2|AVL9 MSMS UPN47_class_I_Rep_3 4 488.2965393066406 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 59.09 1 62.256 61.756 62.756 3.1658 0 0 0 0.3967 1 13780 13780 1.4819 0 1 + 8580 31952 5230 5235 10732 10732 0.09176118971015512 FLVQNIHTL 9 Unmodified _FLVQNIHTL_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MSMS UPN47_class_I_Rep_2 3 542.8125610351562 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 57.815 1 61.106 60.606 61.606 3.2912 0 0 0 0.10315 1 13339 13339 24.021 3.5669 1 8581 2046 5231 5236 10733 10733 0.06922022231265146 FLVQNIHTL 9 Unmodified _FLVQNIHTL_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MSMS UPN47_class_I_Rep_3 4 542.8110961914062 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 57.749 1 60.917 60.417 61.417 3.1681 0 0 0 0.10315 1 13367 13367 24.021 3.5669 1 8582 2046 5231 5236 10734 10734 0.06922022231265146 FLVQNIHTL 9 Unmodified _FLVQNIHTL_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MSMS UPN47_class_I_Rep_3 4 542.8116455078125 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 57.86 1 61.028 60.528 61.528 3.1681 0 0 0 0.10941 1 13401 13401 22.736 3.4793 1 8583 2046 5231 5236 10735 10735 0.06922022231265146 FLVRNPFLT 9 Unmodified _FLVRNPFLT_ 0 0 0 REV__L1MC_dup7601|chr19:11863460-11863872:-|2.16441215122836|0.2749183756837439|2.98|149.0|24|2|anti-sense REV__L1MC_dup7601|chr19:11863460-11863872:-|2.16441215122836|0.2749183756837439|2.98|149.0|24|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.323486328125 2 553.821484 1105.62842 0.44239 0.000245 0.21444 0.00011876 0.65683 0.00036377 554.3234068090466 74.111 0.096916 77.416 77.356 77.453 3.3048 14 10 2 0 0 0 0.36392 1 18250 18250 10.074 0.72649 1 55940 + 8584 26477 5232 5237 10736 10736 0.07982612610931028 FLVTVGHIFL 10 Unmodified _FLVTVGHIFL_ 0 0 0 L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|47|3|anti-sense L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|47|3|anti-sense L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_2 6 573.3395385742188 2 573.33951 1144.66447 NaN NaN NaN NaN NaN NaN NaN 41.785 1 45.536 45.036 46.036 3.7508 0 0 0 0.53105 1 7665 7665 3.9444 0 1 8585 13130 5233 5238 10737 10737 0.09792069787795299 FLVVTTRR 8 Unmodified _FLVVTTRR_ 0 0 0 MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|1|1|sense MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|1|1|sense MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.30657958984375 2 496.306001 990.597449 0.21278 0.0001056 -0.0022351 -1.1093E-06 0.21055 0.0001045 496.30603461694983 74.858 0.093689 78.348 78.295 78.389 3.49 12 5 3 0 0 0 0.82752 1 17709 17709 0.79363 0.79363 1 84695 8586 15836 5234 5239 10738 10738 0.10177459296698999 FLVVTTRR 8 Unmodified _FLVVTTRR_ 0 0 0 MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|1|1|sense MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|1|1|sense MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 496.306001 990.597449 0.27303 0.00013551 -3.2696 -0.0016227 -2.9966 -0.0014872 496.3043238538667 75.024 0.054924 78.614 78.587 78.642 3.59 0.13303 -0.0024947 NaN 0.79363 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 40785 8587 15836 5234 5239 0.10177459296698999 FLWCECLKS 9 Unmodified _FLWCECLKS_ 0 0 0 L1MA8_dup1877|chr3:128775766-128776268:-|1.63266932514134|0.0141639922159092|6.85|151.0|30|2|anti-sense L1MA8_dup1877|chr3:128775766-128776268:-|1.63266932514134|0.0141639922159092|6.85|151.0|30|2|anti-sense L1MA8_dup1877|chr3:128775766-128776268:-|1.63266932514134|0.0141639922159092|6.85|151.0|30|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.76416015625 2 564.764463 1127.51437 0.47767 0.00026977 -0.87277 -0.00049291 -0.3951 -0.00022314 564.7639454267014 77.509 0.52951 80.84 80.597 81.127 3.3315 85 54 2 0 0 0 0.33654 1 19177 19177 11.64 0.81637 1 165670 8588 10046 5235 5240 10739 10739 -0.044283615378390095 FLWDICPR 8 Unmodified _FLWDICPR_ 0 0 0 L1MD2_dup955|chr2:99701484-99702342:-|1.0290215196440593|0.0171234234873745|5.91|148.0|42|1|anti-sense L1MD2_dup955|chr2:99701484-99702342:-|1.0290215196440593|0.0171234234873745|5.91|148.0|42|1|anti-sense L1MD2_dup955|chr2:99701484-99702342:-|1.0290215196440593|0.0171234234873745|5.91|148.0|42|1|anti-sense MSMS UPN48_class_I_Rep_3 7 525.2674560546875 2 525.265487 1048.51642 NaN NaN NaN NaN NaN NaN NaN 50.707 1 54.328 53.828 54.828 3.621 0 0 0 0.40364 1 10316 10316 5.7604 1.0044 1 8589 12049 5236 5241 10740 10740 -0.005895647376974011 FLWGSFCCF 9 Unmodified _FLWGSFCCF_ 0 0 0 L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|140|3|anti-sense L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|140|3|anti-sense L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|140|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2315063476562 2 555.232799 1108.45104 NaN NaN NaN NaN NaN NaN NaN 85.647 1 89.019 88.519 89.519 3.3716 0 0 0 0.39326 1 21456 21456 2.3027 1.5091 1 8590 14983 5237 5242 10741 10741 -0.09884302255068178 FLWGSFCCF 9 Unmodified _FLWGSFCCF_ 0 0 0 L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|140|3|anti-sense L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|140|3|anti-sense L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|140|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2298583984375 2 555.232799 1108.45104 NaN NaN NaN NaN NaN NaN NaN 85.767 1 89.138 88.638 89.638 3.3716 0 0 0 0.39326 1 21488 21488 2.3027 0.24298 1 8591 14983 5237 5242 10742 10742 -0.09884302255068178 FLWLVLGW 8 Unmodified _FLWLVLGW_ 0 0 0 REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 516.795654296875 2 517.297114 1032.57967 0.12656 6.5469E-05 0.019288 9.9776E-06 0.14585 7.5446E-05 517.2970810212662 60.135 0.34243 63.408 63.124 63.466 3.2731 23 17 2 0 0 0 0.72333 1 14043 14043 11.114 0 1 83790 + 8592 18161 5238 5243 10743 10743 0.06468744041853824 FLWNRIGAGK 10 Unmodified _FLWNRIGAGK_ 0 0 0 ENST00000483472.1_1_9:134378440-134381848:+|nuORF ENST00000483472.1_1_9:134378440-134381848:+|nuORF ENST00000483472.1_1_9:134378440-134381848:+|nuORF MSMS UPN47_class_I_Rep_1 2 581.3301391601562 2 581.330008 1160.64546 NaN NaN NaN NaN NaN NaN NaN 59.076 1 62.493 61.993 62.993 3.4171 0 0 0 0.53105 1 13690 13690 3.2813 0.54611 1 8593 7011 5239 5244 10744 10744 0.0715653321674381 FLWQRQILKNL 11 Unmodified _FLWQRQILKNL_ 0 0 0 HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|5|1|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|5|1|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 486.9586486816406 3 486.957511 1457.8507 NaN NaN NaN NaN NaN NaN NaN 93.397 1 97.021 96.521 97.521 3.624 0 0 0 0.38417 1 22448 22448 0.50596 0.09769 1 8594 8336 5240 5245 10745 10745 0.14009266956327338 FLWQWWHLQWY 11 Unmodified _FLWQWWHLQWY_ 0 0 0 Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|85|3|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|85|3|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 564.9419555664062 3 564.941861 1691.80375 NaN NaN NaN NaN NaN NaN NaN 40.929 1 44.601 44.101 45.101 3.6719 0 0 0 0.38417 1 8167 8167 0 0 1 8595 33275 5241 5246 10746 10746 -0.014475925948090662 FLWTRFHFSWY 11 Unmodified _FLWTRFHFSWY_ 0 0 0 L1ME2z_dup4591|chr11:73094247-73094589:+|1.000373001823582|0.0022329416969363|8.81|151.0|19|2|anti-sense L1ME2z_dup4591|chr11:73094247-73094589:+|1.000373001823582|0.0022329416969363|8.81|151.0|19|2|anti-sense L1ME2z_dup4591|chr11:73094247-73094589:+|1.000373001823582|0.0022329416969363|8.81|151.0|19|2|anti-sense MSMS UPN46_class_I_Rep_3 1 530.5945434570312 3 530.594461 1588.76155 NaN NaN NaN NaN NaN NaN NaN 71.173 1 71.173 70.673 71.673 0 0 0 0 0.38417 1 16384 16384 0.094841 0 1 8596 12567 5242 5247 10747 10747 -0.009275680032033051 FLYAGHIFL 9 Unmodified _FLYAGHIFL_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS UPN46_class_I_Rep_3 1 540.7971801757812 2 540.797478 1079.5804 0.34888 0.00018867 0.087165 4.7138E-05 0.43604 0.00023581 540.7974271874444 80.227 0.13251 80.227 80.181 80.314 0 11 10 2 0 0 0 0.19841 1 18905 18905 20.871 6.2895 1 148660 8597 2730 5243 5248 10748 10748 0.04379538690886875 FLYAGHIFL 9 Unmodified _FLYAGHIFL_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS UPN46_class_I_Rep_3 1 540.7971801757812 2 540.797478 1079.5804 0.34932 0.00018891 -0.30036 -0.00016243 0.048965 2.648E-05 540.7971427450263 80.363 0.14994 80.363 80.322 80.472 0 20 14 2 0 0 0 0.19841 1 18936 18936 20.871 6.2895 1 196750 8598 2730 5243 5248 10749 10749 0.04379538690886875 FLYALKGIQSI 11 Unmodified _FLYALKGIQSI_ 0 0 0 REV__L1MB7_dup12294|chrX:74227494-74227742:+|1.7070858497363397|0.0173887866366707|6.62|151.0|9|1|anti-sense REV__L1MB7_dup12294|chrX:74227494-74227742:+|1.7070858497363397|0.0173887866366707|6.62|151.0|9|1|anti-sense MSMS UPN48_class_I_Rep_2 6 626.8702392578125 2 626.868631 1251.72271 NaN NaN NaN NaN NaN NaN NaN 59.774 1 63.261 62.761 63.761 3.4868 0 0 0 0.38417 1 13143 13143 1.1933 0.12188 1 + 8599 26130 5244 5249 10750 10750 0.10691706642433019 FLYCIAEWVS 10 Unmodified _FLYCIAEWVS_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|229|2|anti-sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|229|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 615.7987060546875 2 615.796817 1229.57908 0.63931 0.00039368 2.9036 0.001788 3.5429 0.0021817 615.7983328528722 89.165 0.11736 89.165 89.139 89.257 0 16 11 2 0 0 0 0.56281 1 21447 21447 1.8442 0.19162 1 88490 + 8600 24144 5245 5250 10751 10751 -0.026524634601855723 FLYDDNQRV 9 Unmodified _FLYDDNQRV_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN46_class_I_Rep_3 1 585.2830810546875 2 585.28292 1168.55129 0.48491 0.00028381 -0.24047 -0.00014074 0.24444 0.00014307 585.282883932765 47.996 0.37181 47.996 47.873 48.244 0 63 39 2 0 0 0 0.14216 3 10023 9943;9980;10023 26.268 13.737 1 180650 8601 1166;2720 5246 5251 10752;10753;10754 10754 -0.02624650396069228 FLYDDNQRV 9 Unmodified _FLYDDNQRV_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_1 2 585.2825317382812 2 585.28292 1168.55129 0.059146 3.4617E-05 0.0067952 3.9771E-06 0.065941 3.8594E-05 585.2827611980672 43.705 0.88016 47.4 47.07 47.95 3.6951 112 51 3 0 0 0 0.022868 4 8990 8947;8990;9029;9069 61.602 38.453 1 289210 8602 1166;2720 5246 5251 10755;10756;10757;10758 10756 -0.02624650396069228 FLYDDNQRV 9 Unmodified _FLYDDNQRV_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_2 3 585.2826538085938 2 585.28292 1168.55129 0.16295 9.5373E-05 -0.0013348 -7.8122E-07 0.16162 9.4592E-05 585.2827732215254 44.016 0.88158 47.374 47.001 47.882 3.358 116 49 3 0 0 0 0.057664 3 9096 9096;9146;9188 45.7 26.83 1 262490 8603 1166;2720 5246 5251 10759;10760;10761 10759 -0.02624650396069228 FLYDDNQRV 9 Unmodified _FLYDDNQRV_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_3 4 585.2828979492188 2 585.28292 1168.55129 0.17781 0.00010407 -0.1198 -7.0114E-05 0.058011 3.3953E-05 585.2827645744386 44.154 0.76712 47.399 47.047 47.814 3.2441 104 43 3 0 0 0 0.019142 4 9233 9154;9192;9233;9276 63.961 63.961 1 273250 8604 1166;2720 5246 5251 10762;10763;10764;10765 10764 -0.02624650396069228 FLYDDNQRV 9 Unmodified _FLYDDNQRV_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MATCH UPN48_class_I_Rep_3 7 2 585.28292 1168.55129 0.41734 0.00024426 3.6818 0.0021549 4.0991 0.0023991 585.2829519573364 43.755 0.077839 47.393 47.363 47.441 3.6385 0.0014109 0.0043559 NaN 63.961 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 55929 8605 1166;2720 5246 5251 -0.02624650396069228 FLYECEVW 8 Unmodified _FLYECEVW_ 0 0 0 L1ME1_dup7866|chr4:54038881-54040201:+|3.017732131133119|0.2926427320538116|3.37|151.0|95|3|anti-sense L1ME1_dup7866|chr4:54038881-54040201:+|3.017732131133119|0.2926427320538116|3.37|151.0|95|3|anti-sense L1ME1_dup7866|chr4:54038881-54040201:+|3.017732131133119|0.2926427320538116|3.37|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.2822265625 2 544.741511 1087.46847 NaN NaN NaN NaN NaN NaN NaN 112.32 1 115.98 115.48 116.48 3.6614 0 0 0 0.40604 1 26684 26684 2.5775 0 1 8606 12438 5247 5252 10766 10766 -0.07176683448415133 FLYEDDRVI 9 Unmodified _FLYEDDRVI_ 0 0 0 L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|76|2|anti-sense L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|76|2|anti-sense L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|76|2|anti-sense MSMS UPN47_class_I_Rep_1 2 585.2952880859375 2 585.295496 1168.57644 NaN NaN NaN NaN NaN NaN NaN 70.617 1 73.989 73.489 74.489 3.3713 0 0 0 0.35339 1 17170 17170 7.9102 1.187 1 8607 10960 5248 5253 10767 10767 -0.001105955934690428 FLYESHSRE 9 Unmodified _FLYESHSRE_ 0 0 0 L1M2a_dup296|chr11:47304530-47306850:-|1.8650931216929945|0.0463526041798089|5.33|151.0|71|3|sense L1M2a_dup296|chr11:47304530-47306850:-|1.8650931216929945|0.0463526041798089|5.33|151.0|71|3|sense L1M2a_dup296|chr11:47304530-47306850:-|1.8650931216929945|0.0463526041798089|5.33|151.0|71|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 585.2532958984375 2 584.275095 1166.53564 0.21913 0.00012803 0.0077941 4.5539E-06 0.22693 0.00013259 584.2749420126858 49.443 0.3147 53.102 53.03 53.345 3.6592 29 20 2 0 0 0 0.48643 1 10770 10770 2.0598 0.57785 1 80192 8608 8733 5249 5254 10768 10768 -0.04096936913083482 FLYIWIKIKKF 11 Unmodified _FLYIWIKIKKF_ 0 0 0 REV__L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|177|1|anti-sense REV__L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|177|1|anti-sense MSMS UPN47_class_I_Rep_3 4 500.312744140625 3 500.311003 1497.91118 NaN NaN NaN NaN NaN NaN NaN 37.324 1 40.571 40.071 41.071 3.247 0 0 0 0.38417 1 7144 7144 0.094841 0 1 + 8609 29182 5250 5255 10769 10769 0.18213984286649065 FLYIYLVVPLN 11 Unmodified _FLYIYLVVPLN_ 0 0 0 L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|19|2|sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|19|2|sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 451.93280029296875 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 92.431 1 96.055 95.555 96.555 3.624 0 0 0 0.38417 1 22213 22213 1.3296 0 1 8610 13061 5251 5256 10770 10770 0.1121345033632224 FLYKLKLWRAR 11 Unmodified _FLYKLKLWRAR_ 0 0 0 REV__LTR48B_dup927|chr19:18997815-18998290:+|1.3490487428071685|0.3533773850899628|1.93|151.0|30|3|anti-sense REV__LTR48B_dup927|chr19:18997815-18998290:+|1.3490487428071685|0.3533773850899628|1.93|151.0|30|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 498.6414489746094 3 498.641634 1492.90307 0.13923 6.9426E-05 0.23236 0.00011587 0.37159 0.00018529 498.6416306116673 55.491 0.57357 59.047 58.782 59.356 3.5554 75 35 3 0 0 0 0.68478 1 11770 11770 0.094841 0 1 197910 + 8611 30936 5252 5257 10771 10771 0.17633850089919179 FLYKVVQV 8 Unmodified _FLYKVVQV_ 0 0 0 ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 MSMS UPN47_class_I_Rep_2 3 498.2986145019531 2 498.299853 994.585153 NaN NaN NaN NaN NaN NaN NaN 55.936 1 59.246 58.746 59.746 3.3102 0 0 0 0.388 1 12765 12765 12.532 2.4576 1 8612 1107 5253 5258 10772 10772 0.0876442283366714 FLYKVVQV 8 Unmodified _FLYKVVQV_ 0 0 0 ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 MSMS UPN47_class_I_Rep_3 4 498.29937744140625 2 498.299853 994.585153 NaN NaN NaN NaN NaN NaN NaN 56.115 1 59.287 58.787 59.787 3.1721 0 0 0 0.39819 1 12876 12876 8.5933 1.8701 1 8613 1107 5253 5258 10773 10773 0.0876442283366714 FLYLLWCRY 9 Unmodified _FLYLLWCRY_ 0 0 0 REV__L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|293|3|anti-sense REV__L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|293|3|anti-sense MSMS UPN48_class_I_Rep_1 5 638.8289794921875 2 638.830995 1275.64744 NaN NaN NaN NaN NaN NaN NaN 69.428 1 72.883 72.383 73.383 3.4548 0 0 0 0.40038 1 16107 16107 0.6015 0.076735 1 + 8614 29046 5254 5259 10774 10774 0.02063825910340711 FLYLPQPTL 9 Unmodified _FLYLPQPTL_ 0 0 0 REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|27|1|anti-sense REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.3104858398438 2 546.310418 1090.60628 0.49011 0.00026775 -1.3585 -0.00074218 -0.86842 -0.00047443 546.3095733789737 53.089 0.48669 56.415 56.247 56.734 3.3266 45 27 3 0 0 0 0.35081 1 11919 11919 10.824 0.75 1 138710 + 8615 31171 5255 5260 10775 10775 0.06460388142522788 FLYLPQPTL 9 Unmodified _FLYLPQPTL_ 0 0 0 REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|27|1|anti-sense REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 546.3117065429688 2 546.310418 1090.60628 NaN NaN NaN NaN NaN NaN NaN 55.488 1 58.798 58.298 59.298 3.3102 0 0 0 0.38639 1 12628 12628 3.9444 2.1002 1 + 8616 31171 5255 5260 10776 10776 0.06460388142522788 FLYMPMHL 8 Unmodified _FLYMPMHL_ 0 0 0 REV__ENSG00000196578|ENST00000358642|OR5AC2 REV__ENSG00000196578|ENST00000358642|OR5AC2 MSMS UPN47_class_I_Rep_2 3 526.2603759765625 2 526.258816 1050.50308 NaN NaN NaN NaN NaN NaN NaN 60.62 1 63.885 63.385 64.385 3.2654 0 0 0 0.40581 1 14196 14196 2.8892 0.58649 1 + 8617 20450 5256 5261 10777 10777 -0.02015138841306907 FLYPNYDE 8 Unmodified _FLYPNYDE_ 0 0 0 REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_1 5 530.7349853515625 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 22.977 1 26.537 26.037 27.037 3.5605 0 0 0 0.40738 1 2324 2324 0.79363 0 1 + 8618 26016 5257 5262 10778 10778 -0.07242217955990782 FLYPNYDE 8 Unmodified _FLYPNYDE_ 0 0 0 REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7352294921875 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 23.054 1 26.805 26.305 27.305 3.7507 0 0 0 0.40738 1 2455 2455 0.79363 0 1 + 8619 26016 5257 5262 10779 10779 -0.07242217955990782 FLYRIKILKK 10 Unmodified _FLYRIKILKK_ 0 0 0 L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 441.29766845703125 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 92.943 1 92.943 92.443 93.443 0 0 0 0 0.53105 1 22511 22511 0.15932 0.01943 1 8620 9429 5258 5263 10780 10780 0.21696544455403455 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2 nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MSMS UPN46_class_I_Rep_3 1 557.2780151367188 2 557.276772 1112.53899 0.39451 0.00021985 -0.13764 -7.6701E-05 0.25687 0.00014315 557.2766942104748 75.138 0.41611 75.138 75.001 75.417 0 69 39 2 0 0 0 0.057664 2 17458 17458;17471 45.7 15.063 1 199930 8621 996 5259 5264 10781;10782 10781 -0.012776868590890444 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2 nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MSMS UPN47_class_I_Rep_1 2 557.27685546875 2 557.276772 1112.53899 0.37706 0.00021013 0.069351 3.8648E-05 0.44641 0.00024878 557.2766966602494 70.604 0.73921 73.975 73.686 74.425 3.3713 167 68 3 0 0 0 0.0058741 5 17198 17140;17157;17179;17198;17238 76.825 34.985 1 533820 8622 996 5259 5264 10783;10784;10785;10786;10787 10786 -0.012776868590890444 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2 nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MSMS UPN47_class_I_Rep_2 3 557.2767944335938 2 557.276772 1112.53899 0.41582 0.00023173 0.00067783 3.7774E-07 0.4165 0.00023211 557.2766961378742 70.864 0.70525 74.147 73.869 74.574 3.2828 166 66 3 0 0 0 0.013215 4 17258 17256;17258;17322;17333 67.838 33.436 1 582760 8623 996 5259 5264 10788;10789;10790;10791 10789 -0.012776868590890444 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2 nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MSMS UPN47_class_I_Rep_3 4 557.2769165039062 2 557.276772 1112.53899 0.4463 0.00024871 -0.064841 -3.6135E-05 0.38146 0.00021258 557.276678361571 70.895 0.81036 74.106 73.751 74.561 3.2113 166 70 3 0 0 0 0.0053074 4 17369 17328;17369;17383;17408 79.596 29.663 1 463230 8624 996 5259 5264 10792;10793;10794;10795 10793 -0.012776868590890444 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2 nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 557.276772 1112.53899 0.41276 0.00023002 -0.14815 -8.2559E-05 0.26461 0.00014746 557.7778916271142 70.574 0.052643 73.857 73.816 73.869 3.2828 -0.059181 -0.0002394 NaN 76.825 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 34651 8625 996 5259 5264 -0.012776868590890444 FLYSWTSTL 9 Unmodified _FLYSWTSTL_ 0 0 0 ENST00000526488.5_1_11:3405399-3417049:+|nuORF ENST00000526488.5_1_11:3405399-3417049:+|nuORF ENST00000526488.5_1_11:3405399-3417049:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 559.761474609375 2 559.281857 1116.54916 0.50998 0.00028522 -0.57057 -0.00031911 -0.060592 -3.3888E-05 559.2817099422799 68.682 0.17297 72.133 72.052 72.225 3.4517 15 13 2 0 0 0 0.086155 1 15855 15855 23.148 2.6948 1 56489 8626 7260 5260 5265 10796 10796 -0.004450791338513227 FLYYNCFS 8 Unmodified _FLYYNCFS_ 0 0 0 Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|45|3|anti-sense Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|45|3|anti-sense Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_2 6 528.7291259765625 2 528.728403 1055.44225 NaN NaN NaN NaN NaN NaN NaN 115.44 1 119.1 118.6 119.6 3.6616 0 0 0 0.40643 1 27630 27630 2.0598 1.2661 1 8627 33230 5261 5266 10797 10797 -0.08324952619886972 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 641.8591918945312 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 107.83 1 107.83 107.33 108.33 0 0 0 0 0.53105 1 26305 26305 6.2058 0 1 + 8628 23700 5262 5267 10798 10798 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 641.8583984375 2 641.859418 1281.70428 0.57852 0.00037133 0.020816 1.3361E-05 0.59933 0.00038469 641.8592680716092 104.61 2.0035 108.38 108.25 110.25 3.7627 824 299 3 0 0 0 0.54466 4 26044 26044;26047;26071;26099 6.2058 1.3088 1 343190000 + 8629 23700 5262 5267 10799;10800;10801;10802 10799 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 641.8590087890625 2 641.859418 1281.70428 0.57866 0.00037142 -0.55236 -0.00035454 0.026301 1.6882E-05 641.8582535995284 107.26 0.41187 110.93 110.68 111.09 3.6724 81 46 3 0 0 0 0.52562 3 26260 26221;26260;26284 8.7454 3.0136 1 550720 + 8630 23700 5262 5267 10803;10804;10805 10804 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 641.8585815429688 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.57 1 110.28 109.78 110.78 3.7088 0 0 0 0.53105 1 26125 26125 6.2058 0.47393 1 + 8631 23700 5262 5267 10806 10806 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 641.8582763671875 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.84 1 110.51 110.01 111.01 3.6724 0 0 0 0.53105 1 26182 26182 6.2058 0.47393 1 + 8632 23700 5262 5267 10807 10807 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 641.8590087890625 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.96 1 110.63 110.13 111.13 3.6724 0 0 0 0.53105 1 26208 26208 6.2058 0.47393 1 + 8633 23700 5262 5267 10808 10808 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 641.8588256835938 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 107.08 1 110.75 110.25 111.25 3.6724 0 0 0 0.53105 1 26232 26232 6.2058 0.47393 1 + 8634 23700 5262 5267 10809 10809 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 641.8588256835938 2 641.859418 1281.70428 0.57866 0.00037142 -0.55236 -0.00035454 0.026301 1.6882E-05 641.8582535995284 107.26 0.41187 110.93 110.68 111.09 3.6724 81 46 3 0 0 0 0.84575 1 26232 26232 6.2058 0.47393 1 550720 + 8635 23700 5262 5267 10810 10810 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 641.8595581054688 2 641.859418 1281.70428 0.63471 0.00040739 -0.11181 -7.1769E-05 0.52289 0.00033562 641.8592339477017 104.99 1.2618 108.52 108.44 109.7 3.5327 541 194 4 0 0 0 0.54466 1 25509 25509 6.2058 0 1 97266000 + 8636 23700 5262 5267 10811 10811 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 641.8594360351562 2 641.859418 1281.70428 0.63473 0.00040741 -0.58449 -0.00037516 0.050241 3.2248E-05 641.8587963328015 106.8 0.1428 110.33 110.24 110.39 3.5345 44 21 4 0 0 0 0.54466 1 25842 25842 6.2058 1.3088 1 661320 + 8637 23700 5262 5267 10812 10812 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 641.8587036132812 2 641.859418 1281.70428 0.63446 0.00040723 -0.51877 -0.00033298 0.11568 7.4252E-05 641.85858416952 106.88 0.16684 110.42 110.37 110.54 3.5345 28 24 2 0 0 0 0.54466 2 25866 25866;25892 6.2058 1.3088 1 230170 + 8638 23700 5262 5267 10813;10814 10813 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 641.8583984375 2 641.859418 1281.70428 0.63486 0.00040749 -0.28595 -0.00018354 0.34891 0.00022395 641.8588763883355 107.26 0.40417 110.79 110.51 110.91 3.5345 124 57 4 0 0 0 0.54466 1 25936 25936 6.2058 1.3088 1 682980 + 8639 23700 5262 5267 10815 10815 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 641.8594970703125 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.01 1 109.54 109.04 110.04 3.5345 0 0 0 0.53105 1 25691 25691 6.2058 0.47393 1 + 8640 23700 5262 5267 10816 10816 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 641.858642578125 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.38 1 109.91 109.41 110.41 3.5345 0 0 0 0.53105 1 25770 25770 6.2058 0.47393 1 + 8641 23700 5262 5267 10817 10817 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 641.8589477539062 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.5 1 110.03 109.53 110.53 3.5345 0 0 0 0.53105 1 25797 25797 6.2058 0.47393 1 + 8642 23700 5262 5267 10818 10818 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 641.8590087890625 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.62 1 110.16 109.66 110.66 3.5345 0 0 0 0.53105 1 25819 25819 6.2058 0.47393 1 + 8643 23700 5262 5267 10819 10819 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 642.36181640625 2 641.859418 1281.70428 0.5148 0.00033043 0.2899 0.00018608 0.80471 0.00051651 641.8594479059101 104.81 2.3238 108.34 108.17 110.49 3.5308 840 358 3 0 0 0 0.54466 7 26000 26000;26037;26060;26081;26094;26115;26120 6.2058 1.3088 1 217320000 + 8644 23700 5262 5267 10820;10821;10822;10823;10824;10825;10826 10820 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 642.3621826171875 2 641.859418 1281.70428 0.51506 0.0003306 -0.29555 -0.0001897 0.21951 0.00014089 642.3613678243456 107.15 0.15899 110.69 110.58 110.74 3.5382 50 22 4 0 0 0 0.54466 2 26152 26144;26152 6.2058 1.3088 1 433000 + 8645 23700 5262 5267 10827;10828 10828 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 642.361572265625 2 641.859418 1281.70428 0.5151 0.00033062 -0.23738 -0.00015236 0.27772 0.00017826 641.858752966073 107.31 0.18272 110.85 110.72 110.91 3.5382 66 22 4 0 0 0 0.54466 1 26172 26172 6.2058 1.3088 1 1252800 + 8646 23700 5262 5267 10829 10829 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.8597412109375 2 641.859418 1281.70428 0.43656 0.00028021 -0.44535 -0.00028585 -0.0087913 -5.6428E-06 641.8593981347177 104.4 1.2189 108.02 107.82 109.04 3.6247 926 178 8 0 0 0 0.54466 1 25359 25359 6.2058 0 1 346550000 + 8647 23700 5262 5267 10830 10830 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.8595581054688 2 641.859418 1281.70428 0.4359 0.00027979 0.38909 0.00024974 0.82499 0.00052953 641.8590494308011 106.65 0.11097 110.28 110.24 110.35 3.6299 17 14 2 0 0 0 0.54466 1 25693 25693 6.2058 0.47393 1 68034 + 8648 23700 5262 5267 10831 10831 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.8587646484375 2 641.859418 1281.70428 0.43594 0.00027982 0.29385 0.00018861 0.7298 0.00046843 642.3614889171367 107.21 0.21493 110.84 110.65 110.86 3.6299 36 25 2 0 0 0 0.54466 1 25808 25808 6.2058 1.3088 1 119210 + 8649 23700 5262 5267 10832 10832 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_1 5 641.8576049804688 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.49 1 110.12 109.62 110.62 3.6299 0 0 0 0.53105 1 25654 25654 6.2058 0.47393 1 + 8650 23700 5262 5267 10833 10833 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_1 5 641.859375 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.96 1 110.59 110.09 111.09 3.6299 0 0 0 0.53105 1 25767 25767 6.2058 0.47393 1 + 8651 23700 5262 5267 10834 10834 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 641.8591918945312 2 641.859418 1281.70428 0.49984 0.00032082 -0.21666 -0.00013907 0.28318 0.00018176 641.8589049657751 105.5 0.64816 109.19 109.09 109.74 3.6901 166 90 3 0 0 0 0.51565 6 25029 24935;24972;24999;25029;25055;25060 10.074 2.9722 1 2163300 + 8652 23700 5262 5267 10835;10836;10837;10838;10839;10840 10838 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 642.3614501953125 2 641.859418 1281.70428 0.49971 0.00032074 -0.30047 -0.00019286 0.19924 0.00012788 641.858727698188 106.27 0.21373 109.95 109.85 110.06 3.6834 40 30 2 0 0 0 0.54466 2 25119 25119;25127 6.2058 1.3088 1 107550 + 8653 23700 5262 5267 10841;10842 10841 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 641.8582763671875 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.09 1 109.77 109.27 110.27 3.6834 0 0 0 0.53105 1 25090 25090 6.2058 0.47393 1 + 8654 23700 5262 5267 10843 10843 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 641.8600463867188 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.53 1 110.21 109.71 110.71 3.6834 0 0 0 0.53105 1 25179 25179 6.2058 0.47393 1 + 8655 23700 5262 5267 10844 10844 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 641.8574829101562 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.62 1 110.31 109.81 110.81 3.6834 0 0 0 0.53105 1 25201 25201 6.2058 0.47393 1 + 8656 23700 5262 5267 10845 10845 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 641.859375 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.67 1 110.36 109.86 110.86 3.6834 0 0 0 0.53105 1 25213 25213 6.2058 0.47393 1 + 8657 23700 5262 5267 10846 10846 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 641.8605346679688 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.82 1 110.5 110 111 3.6783 0 0 0 0.53105 1 25244 25244 6.2058 0.47393 1 + 8658 23700 5262 5267 10847 10847 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 641.8599853515625 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 107.13 1 110.81 110.31 111.31 3.6783 0 0 0 0.53105 1 25307 25307 6.2058 0.47393 1 + 8659 23700 5262 5267 10848 10848 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 642.3614501953125 2 641.859418 1281.70428 0.49971 0.00032074 -0.30047 -0.00019286 0.19924 0.00012788 641.858727698188 106.27 0.21373 109.95 109.85 110.06 3.6834 40 30 2 0 0 0 0.84575 1 25119 25119 6.2058 1.3088 1 107550 + 8660 23700 5262 5267 10849 10849 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 642.3612670898438 2 641.859418 1281.70428 0.63884 0.00041004 -0.44752 -0.00028725 0.19131 0.0001228 641.8590139502396 105.16 0.99924 108.86 108.82 109.82 3.702 529 146 6 0 0 0 0.54466 4 24997 24997;24999;25019;25026 6.2058 1.3088 1 12794000 + 8661 23700 5262 5267 10850;10851;10852;10853 10850 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 641.8575439453125 2 641.859418 1281.70428 0.63714 0.00040895 -1.1021 -0.0007074 -0.46497 -0.00029844 641.8582780288527 106.11 0.23479 109.82 109.73 109.96 3.702 48 33 2 0 0 0 0.54466 2 25029 25029;25057 6.2058 0.47393 1 381760 + 8662 23700 5262 5267 10854;10855 10854 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 641.8585815429688 2 641.859418 1281.70428 0.63744 0.00040915 -0.3822 -0.00024532 0.25525 0.00016383 641.8587269288657 106.31 0.15162 110 109.93 110.08 3.6899 28 21 2 0 0 0 0.54466 1 25085 25085 6.2058 1.3088 1 234170 + 8663 23700 5262 5267 10856 10856 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 642.3616943359375 2 641.859418 1281.70428 0.63766 0.00040929 0.21449 0.00013767 0.85214 0.00054696 642.361206255098 106.72 0.092987 110.41 110.39 110.48 3.6899 20 13 2 0 0 0 0.54466 1 25164 25164 6.2058 1.3088 1 100400 + 8664 23700 5262 5267 10857 10857 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_3 7 641.8594360351562 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 105.85 1 109.55 109.05 110.05 3.702 0 0 0 0.53105 1 24973 24973 6.2058 0.47393 1 + 8665 23700 5262 5267 10858 10858 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_3 7 641.8590087890625 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.52 1 110.21 109.71 110.71 3.6899 0 0 0 0.53105 1 25118 25118 6.2058 0.47393 1 + 8666 23700 5262 5267 10859 10859 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_3 7 641.859375 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.86 1 110.55 110.05 111.05 3.6899 0 0 0 0.53105 1 25192 25192 6.2058 0.47393 1 + 8667 23700 5262 5267 10860 10860 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MSMS UPN48_class_I_Rep_3 7 641.8597412109375 2 641.859418 1281.70428 NaN NaN NaN NaN NaN NaN NaN 106.99 1 110.68 110.18 111.18 3.6899 0 0 0 0.53105 1 25220 25220 6.2058 0.47393 1 + 8668 23700 5262 5267 10861 10861 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 642.3609008789062 2 641.859418 1281.70428 0.63714 0.00040895 -1.1021 -0.0007074 -0.46497 -0.00029844 641.8582780288527 106.11 0.23479 109.82 109.73 109.96 3.702 48 33 2 0 0 0 0.84575 1 25019 25019 6.2058 0.47393 1 381760 + 8669 23700 5262 5267 10862 10862 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 641.859418 1281.70428 0.74987 0.00048131 -0.21158 -0.0001358 0.53829 0.0003455 641.8588711035915 109.97 0.26852 109.97 109.86 110.13 0 -0.079936 5.5664E-06 NaN 6.2058 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 474830 + 8670 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 641.859418 1281.70428 0.63446 0.00040723 -0.51877 -0.00033298 0.11568 7.4252E-05 641.85858416952 106.88 0.16684 110.42 110.37 110.54 3.5345 -0.034855 -0.0002621 NaN 6.2058 28 24 2 NaN NaN NaN NaN 0 NaN NaN 0 230170 + 8671 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 641.859418 1281.70428 0.51506 0.0003306 -0.29555 -0.0001897 0.21951 0.00014089 642.3613678243456 107.15 0.15899 110.69 110.58 110.74 3.5382 -0.1158 4.2483E-05 NaN 8.7454 50 22 4 NaN NaN NaN NaN 0 NaN NaN 0 433000 + 8672 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 641.859418 1281.70428 0.51469 0.00033036 -0.49871 -0.0003201 0.015981 1.0257E-05 641.8587825519395 107 0.092674 110.54 110.5 110.59 3.5382 0.084633 -0.00023634 NaN 6.2058 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 184830 + 8673 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 641.859418 1281.70428 0.5151 0.00033062 -0.23738 -0.00015236 0.27772 0.00017826 641.858752966073 107.31 0.18272 110.85 110.72 110.91 3.5382 0.0038977 -0.00032587 NaN 6.2058 66 22 4 NaN NaN NaN NaN 0 NaN NaN 0 1252800 + 8674 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 641.859418 1281.70428 0.4359 0.00027979 0.38909 0.00024974 0.82499 0.00052953 641.8590494308011 106.65 0.11097 110.28 110.24 110.35 3.6299 0.23181 0.00077665 NaN 6.2058 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 68034 + 8675 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 641.859418 1281.70428 0.43594 0.00027982 0.29385 0.00018861 0.7298 0.00046843 642.3614889171367 107.21 0.21493 110.84 110.65 110.86 3.6299 -0.0038977 0.00035608 NaN 6.2058 36 25 2 NaN NaN NaN NaN 0 NaN NaN 0 119210 + 8676 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 641.859418 1281.70428 0.63766 0.00040929 0.21449 0.00013767 0.85214 0.00054696 642.361206255098 106.72 0.092987 110.41 110.39 110.48 3.6899 -0.045507 0.0006792 NaN 6.2058 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 100400 + 8677 23700 5262 5267 0.07469828676198631 FMFELLIKLE 10 Unmodified _FMFELLIKLE_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|37|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 641.859418 1281.70428 0.63744 0.00040915 -0.3822 -0.00024532 0.25525 0.00016383 641.8587269288657 106.31 0.15162 110 109.93 110.08 3.6899 -0.051437 -0.00021346 NaN 6.2058 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 234170 + 8678 23700 5262 5267 0.07469828676198631 FMFGQKLNV 9 Oxidation (M) _FM(Oxidation (M))FGQKLNV_ FM(1)FGQKLNV FM(46)FGQKLNV 0 0 1 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000601664.1_1_19:39329532-39330816:-|nuORF;ENST00000421896.1_1_6:7481658-7482147:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN47_class_I_Rep_1 2 550.2838745117188 2 550.283877 1098.5532 0.36981 0.0002035 -0.098353 -5.4122E-05 0.27146 0.00014938 550.2836247382061 54.847 0.68874 58.349 57.902 58.591 3.5014 78 41 2 0 0 0 0.056917 1 12403 12403 46.021 19.137 1 143570 8679 1706 5263 5268 10863 10863 52 0.007866870882025978 FMFGQKLNV 9 Oxidation (M) _FM(Oxidation (M))FGQKLNV_ FM(1)FGQKLNV FM(50)FGQKLNV 0 0 1 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000601664.1_1_19:39329532-39330816:-|nuORF;ENST00000421896.1_1_6:7481658-7482147:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN47_class_I_Rep_3 4 550.2842407226562 2 550.283877 1098.5532 0.42245 0.00023247 0.022216 1.2225E-05 0.44466 0.00024469 550.2837947779703 55.223 0.70945 58.401 58.043 58.753 3.1779 66 42 2 0 0 0 0.047711 1 12590 12590 49.933 24.534 1 173090 8680 1706 5263 5268 10864 10864 52 0.007866870882025978 FMFHYFRL 8 Unmodified _FMFHYFRL_ 0 0 0 REV__MLT1K_dup15906|chr19:39347001-39347306:-|1.6018182733609276|0.240235764659944|2.74|151.0|5|1|sense REV__MLT1K_dup15906|chr19:39347001-39347306:-|1.6018182733609276|0.240235764659944|2.74|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 580.7903442382812 2 580.78913 1159.56371 NaN NaN NaN NaN NaN NaN NaN 29.017 1 32.509 32.009 33.009 3.4923 0 0 0 0.40738 1 4587 4587 0.79363 0.10326 1 + 8681 31790 5264 5269 10865 10865 -0.009692854667036954 FMFILWTHH 9 Unmodified _FMFILWTHH_ 0 0 0 REV__AluJb_dup74806|chr10:103170527-103170826:-|1.0782552409441677|0.076959687589751|3.81|151.0|13|1|anti-sense REV__AluJb_dup74806|chr10:103170527-103170826:-|1.0782552409441677|0.076959687589751|3.81|151.0|13|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 616.308837890625 2 616.307687 1230.60082 0.4107 0.00025312 1.8579 0.0011451 2.2686 0.0013982 616.308729661378 56.921 0.34822 60.379 60.264 60.613 3.4572 54 30 2 0 0 0 0.48643 1 13091 13091 2.0598 0 1 169930 + 8682 16960 5265 5270 10866 10866 -0.005256139209450339 FMFKHASIY 9 Unmodified _FMFKHASIY_ 0 0 0 REV__L1ME4b_dup4520|chr3:141493677-141494410:-|1.690945904817797|0.0361105840962493|5.55|151.0|8|1|sense REV__L1ME4b_dup4520|chr3:141493677-141494410:-|1.690945904817797|0.0361105840962493|5.55|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.2872924804688 2 572.28642 1142.55829 0.29273 0.00016752 1.5662 0.00089632 1.8589 0.0010638 572.2872394880035 46.326 0.4174 49.57 49.38 49.798 3.2439 44 27 2 0 0 0 0.36392 1 9906 9906 10.074 0.6908 1 86296 + 8683 28300 5266 5271 10867 10867 -0.007290090491551382 FMFLVGVG 8 Unmodified _FMFLVGVG_ 0 0 0 REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|58|2|anti-sense REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|58|2|anti-sense MSMS UPN47_class_I_Rep_1 2 435.2335510253906 2 435.233125 868.451696 NaN NaN NaN NaN NaN NaN NaN 28.71 1 32.476 31.976 32.976 3.7662 0 0 0 0.40581 1 4460 4460 2.8892 0 1 + 8684 25161 5267 5272 10868 10868 0.012208604563284098 FMFLWRVN 8 Unmodified _FMFLWRVN_ 0 0 0 REV__Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|10|1|sense REV__Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 556.8013916015625 2 556.78913 1111.56371 NaN NaN NaN NaN NaN NaN NaN 112.93 1 116.56 116.06 117.06 3.6314 0 0 0 0.40738 1 27421 27421 0.79363 0 1 + 8685 17404 5268 5273 10869 10869 0.012387145333150329 FMFVGHMY 8 Unmodified _FMFVGHMY_ 0 0 0 L1PA16_dup1012|chr2:27390648-27391647:-|1.7581663162543524|0.0998680483792947|4.14|151.0|39|1|anti-sense L1PA16_dup1012|chr2:27390648-27391647:-|1.7581663162543524|0.0998680483792947|4.14|151.0|39|1|anti-sense L1PA16_dup1012|chr2:27390648-27391647:-|1.7581663162543524|0.0998680483792947|4.14|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.2261962890625 2 516.227516 1030.44048 NaN NaN NaN NaN NaN NaN NaN 47.356 1 51.092 50.592 51.592 3.7361 0 0 0 0.4032 1 9346 9346 6.3541 1.1234 1 8686 14011 5269 5274 10870 10870 -0.07352284909484297 FMFVPRKFDQF 11 Unmodified _FMFVPRKFDQF_ 0 0 0 REV__L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|162|3|anti-sense REV__L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|162|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 488.04962158203125 3 487.916436 1460.72748 0.2085 0.00010173 2.3827 0.0011626 2.5912 0.0012643 487.91750206898945 59.291 0.08733 59.291 59.249 59.337 0 13 10 2 0 0 0 22.551 1 13091 13091 0.50596 0 1 210150 + 8687 24277 5270 5275 10871 10871 0.015542675135293393 FMGRLVKRIP 10 Unmodified _FMGRLVKRIP_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MSMS UPN47_class_I_Rep_2 3 406.248779296875 3 406.249749 1215.72742 NaN NaN NaN NaN NaN NaN NaN 82.712 1 86.111 85.611 86.611 3.3984 0 0 0 0.53105 1 20618 20618 0.69767 0.07084 1 8688 5218 5271 5276 10872 10872 0.1281831230419357 FMHMCTDEHL 10 Unmodified _FMHMCTDEHL_ 0 0 0 REV__L1PREC2_dup6880|chr17:8943889-8944417:-|1.9773208960387016|0.0161973002501531|6.93|151.0|1|1|sense REV__L1PREC2_dup6880|chr17:8943889-8944417:-|1.9773208960387016|0.0161973002501531|6.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 632.25048828125 2 632.251394 1262.48823 NaN NaN NaN NaN NaN NaN NaN 19.964 1 23.585 23.085 24.085 3.6215 0 0 0 0.53105 1 1610 1610 1.6526 0.17072 1 + 8689 30749 5272 5277 10873 10873 -0.13250998771604827 FMHPFHFL 8 Unmodified _FMHPFHFL_ 0 0 0 L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|70|2|anti-sense L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|70|2|anti-sense L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|70|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 538.8020629882812 2 538.262748 1074.51094 0.58657 0.00031573 2.2268 0.0011986 2.8134 0.0015143 538.2638051356291 62.901 0.19202 66.41 66.29 66.482 3.5091 16 13 2 0 0 0 0.72333 1 14038 14038 11.114 1.767 1 80353 8690 11564 5273 5278 10874 10874 -0.02333243529506035 FMHPFHFL 8 Unmodified _FMHPFHFL_ 0 0 0 L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|70|2|anti-sense L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|70|2|anti-sense L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|70|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 538.262748 1074.51094 0.49368 0.00026573 2.6025 0.0014009 3.0962 0.0016666 538.2644308995584 63.064 0.048397 66.526 66.486 66.534 3.4625 0.058282 0.00034922 NaN 11.114 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 60491 8691 11564 5273 5278 -0.02333243529506035 FMILRQKP 8 Unmodified _FMILRQKP_ 0 0 0 L1MC4_dup21741|chr17:47452157-47452342:+|1.5969623136483384|0.0704520416980824|4.5|151.0|9|1|anti-sense L1MC4_dup21741|chr17:47452157-47452342:+|1.5969623136483384|0.0704520416980824|4.5|151.0|9|1|anti-sense L1MC4_dup21741|chr17:47452157-47452342:+|1.5969623136483384|0.0704520416980824|4.5|151.0|9|1|anti-sense MSMS UPN47_class_I_Rep_1 2 516.8052368164062 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 102.85 1 106.63 106.13 107.13 3.7788 0 0 0 0.40746 1 25304 25304 0.69038 0 1 8692 11459 5274 5279 10875 10875 0.08047287567387684 FMIMVICFFC 10 Unmodified _FMIMVICFFC_ 0 0 0 REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|62|1|anti-sense REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 627.2815551757812 2 627.28312 1252.55169 0.047955 3.0081E-05 -1.0364 -0.00065012 -0.98845 -0.00062004 627.2824227503626 15.733 0.25785 19.119 18.988 19.245 3.3864 37 27 2 0 0 0 0.56478 1 883 883 0.45834 0 1 29253 + 8693 25917 5275 5280 10876 10876 -0.06448729588055357 FMIRTPKAM 9 Unmodified _FMIRTPKAM_ 0 0 0 L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|102|2|sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|102|2|sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|102|2|sense MSMS UPN48_class_I_Rep_1 5 547.9132690429688 2 547.796097 1093.57764 NaN NaN NaN NaN NaN NaN NaN 27.103 1 30.665 30.165 31.165 3.5629 0 0 0 0.39428 1 3437 3437 2.0598 0 1 8694 14908 5276 5281 10877 10877 0.034596239700704245 FMLDFPHFL 9 Unmodified _FMLDFPHFL_ 0 0 0 REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|150|1|anti-sense REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_2 3 583.7661743164062 2 583.788795 1165.56304 NaN NaN NaN NaN NaN NaN NaN 37.245 1 40.644 40.144 41.144 3.3988 0 0 0 0.39428 1 7081 7081 2.0598 0 1 + 8695 28911 5277 5282 10878 10878 -0.013121249064170115 FMLEFRILSK 10 Unmodified _FMLEFRILSK_ 0 0 0 REV__L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|91|1|anti-sense REV__L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|91|1|anti-sense MSMS UPN47_class_I_Rep_2 3 642.3616943359375 2 642.362659 1282.71076 NaN NaN NaN NaN NaN NaN NaN 106.7 1 110.24 109.74 110.74 3.5345 0 0 0 0.53105 1 25834 25834 3.9444 0.94915 1 + 8696 25717 5278 5283 10879 10879 0.0807176662758593 FMLFGKKQN 9 Unmodified _FMLFGKKQN_ 0 0 0 REV__L1MA6_dup1715|chr5:50771722-50772679:-|2.265406708148733|0.036305623834732|5.96|151.0|8|1|sense REV__L1MA6_dup1715|chr5:50771722-50772679:-|2.265406708148733|0.036305623834732|5.96|151.0|8|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 556.2968139648438 2 556.799694 1111.58484 0.47416 0.00026401 -1.3184 -0.0007341 -0.84427 -0.00047009 556.7992796584667 101.98 0.10477 105.59 105.55 105.66 3.612 16 14 2 0 0 0 0.12444 1 24609 24609 2.0598 0.21551 1 73747 + 8697 25441 5279 5284 10880 10880 0.033506798421740314 FMLKIVSTI 9 Unmodified _FMLKIVSTI_ 0 0 0 REV__ENSG00000143653|ENST00000366510|SCCPDH REV__ENSG00000143653|ENST00000366510|SCCPDH MSMS UPN48_class_I_Rep_3 7 526.3169555664062 2 526.314646 1050.61474 NaN NaN NaN NaN NaN NaN NaN 70.885 1 74.403 73.903 74.903 3.5185 0 0 0 0.38784 1 16424 16424 3.5965 1.2938 1 + 8698 19458 5280 5285 10881 10881 0.09145618787488274 FMLLPYSWF 9 Unmodified _FMLLPYSWF_ 0 0 0 LTR13A_dup90|chr10:102758571-102759531:-|1.553000543722746|0.1454058437530838|3.42|151.0|27|3|sense;LTR13A_dup187|chr22:50533868-50534815:+|1.0130819055403697|0.4624152967439138|1.13|151.0|18|2|sense LTR13A_dup90|chr10:102758571-102759531:-|1.553000543722746|0.1454058437530838|3.42|151.0|27|3|sense LTR13A_dup90|chr10:102758571-102759531:-|1.553000543722746|0.1454058437530838|3.42|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 602.299560546875 2 602.298996 1202.58344 0.45192 0.00027219 -1.6985 -0.001023 -1.2466 -0.00075083 602.2976462477493 70.813 0.06234 74.024 73.992 74.055 3.2113 7 5 2 0 0 0 0.48414 1 17348 17348 2.3027 0.4585 1 54753 8699 15570 5281 5286 10882 10882 -0.009749542466124694 FMLYDMYY 8 Unmodified _FMLYDMYY_ 0 0 0 REV__ENSG00000124302|ENST00000650847|CHST8 REV__ENSG00000124302|ENST00000650847|CHST8 MSMS UPN46_class_I_Rep_3 1 573.2385864257812 2 573.237747 1144.46094 NaN NaN NaN NaN NaN NaN NaN 28.027 1 28.027 27.527 28.527 0 0 0 0 0.40604 1 4245 4245 2.5775 0.27475 1 + 8700 18804 5282 5287 10883 10883 -0.1055115904032391 FMMKRRQP 8 Unmodified _FMMKRRQP_ 0 0 0 REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A MSMS UPN48_class_I_Rep_1 5 547.2920532226562 2 547.291514 1092.56847 NaN NaN NaN NaN NaN NaN NaN 23.041 1 26.602 26.102 27.102 3.5605 0 0 0 0.40746 1 2341 2341 0.69038 0 1 + 8701 18746 5283 5288 10884 10884 0.025892754044207322 FMMRRDQEVP 10 Unmodified _FMMRRDQEVP_ 0 0 0 REV__nc|ENSG00000289604|P0CG41|CTAGE8 REV__nc|ENSG00000289604|P0CG41|CTAGE8 MSMS UPN47_class_I_Rep_1 2 436.8791198730469 3 436.877764 1307.61146 NaN NaN NaN NaN NaN NaN NaN 98.11 1 101.9 101.4 102.4 3.7861 0 0 0 0.53105 1 24292 24292 0.77653 0.078866 1 + 8702 21314 5284 5289 10885 10885 -0.030039993288255573 FMPFAILKN 9 Unmodified _FMPFAILKN_ 0 0 0 ENST00000438528.7_2_8:42408025-42408145:+|nuORF ENST00000438528.7_2_8:42408025-42408145:+|nuORF ENST00000438528.7_2_8:42408025-42408145:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 540.7979125976562 2 540.799163 1079.58377 0.39772 0.00021509 -2.8352 -0.0015333 -2.4374 -0.0013182 540.7973170327883 73.086 0.18745 76.472 76.401 76.588 3.3861 14 10 2 0 0 0 0.12235 1 17942 17942 4.756 0 1 66065 8703 6763 5285 5290 10886 10886 0.047164654732569034 FMPLLHAIF 9 Unmodified _FMPLLHAIF_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MSMS UPN47_class_I_Rep_1 2 544.800537109375 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 20.633 1 24.277 23.777 24.777 3.6436 0 0 0 0.40038 1 2107 2107 0.6015 0 1 8704 5059 5286 5291 10887 10887 0.0485676933585637 FMPTMKLDQIQ 11 Unmodified _FMPTMKLDQIQ_ 0 0 0 REV__L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|70|2|anti-sense REV__L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_3 7 451.2303466796875 3 451.229803 1350.66758 NaN NaN NaN NaN NaN NaN NaN 94.935 1 98.837 98.337 99.337 3.9016 0 0 0 0.38417 1 22501 22501 1.3296 0.55311 1 + 8705 26353 5287 5292 10888 10888 0.006272087879779065 FMPVVPKVFT 10 Unmodified _FMPVVPKVFT_ 0 0 0 MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|75|2|anti-sense MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|75|2|anti-sense MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_2 3 582.8165893554688 2 582.827921 1163.64129 NaN NaN NaN NaN NaN NaN NaN 65.12 1 68.376 67.876 68.876 3.2556 0 0 0 0.53105 1 15559 15559 3.5965 0.31518 1 8706 16604 5288 5293 10889 10889 0.06601307678829471 FMQDPMEI 8 Unmodified _FMQDPMEI_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000482195.5_1_6:31499071-31508296:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MULTI-MSMS UPN48_class_I_Rep_1 5 505.71990966796875 2 505.719721 1009.42489 0.24579 0.0001243 -0.049006 -2.4784E-05 0.19678 9.9518E-05 505.7196355856795 75.561 0.68436 79.061 78.754 79.439 3.4996 96 64 3 0 0 0 0.82752 1 17850 17850 2.0598 2.0598 1 328560 8707 5440 5289 5294 10890 10890 -0.07944616217196199 FMQESDASNFL 11 Unmodified _FMQESDASNFL_ 0 0 0 ENSG00000165623|ENST00000378681|UCMA ENSG00000165623|ENST00000378681|UCMA ENSG00000165623|ENST00000378681|UCMA MSMS UPN46_class_I_Rep_3 1 644.7822265625 2 644.779353 1287.54415 NaN NaN NaN NaN NaN NaN NaN 32.852 1 32.852 32.352 33.352 0 0 0 0 0.38417 1 5674 5674 2.086 0.24177 1 8708 4190 5290 5295 10891 10891 -0.08811751058783557 FMQHVQVQF 9 Unmodified _FMQHVQVQF_ 0 0 0 REV__L1MEc_dup6463|chr5:143285421-143286295:+|3.468384020453642|0.288626341658795|3.59|151.0|31|1|anti-sense REV__L1MEc_dup6463|chr5:143285421-143286295:+|3.468384020453642|0.288626341658795|3.59|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 582.3040771484375 2 582.286951 1162.55935 NaN NaN NaN NaN NaN NaN NaN 70.569 1 74.087 73.587 74.587 3.5185 0 0 0 0.096434 1 16335 16335 25.399 4.9457 1 + 8709 28466 5291 5296 10892 10892 -0.015427946802674342 FMRIKKKRIKS 11 Unmodified _FMRIKKKRIKS_ 0 0 0 REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 479.5852966308594 3 478.974508 1433.90169 0.11073 5.3038E-05 0.914 0.00043778 1.0247 0.00049082 478.97488504396034 102.75 0.043716 106.36 106.34 106.38 3.6164 7 5 2 0 0 0 22.551 1 24768 24768 0.094841 0 1 275760 + 8710 28642 5292 5297 10893 10893 0.2020989272953102 FMRKKGFG 8 Unmodified _FMRKKGFG_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;nc|ENSG00000213614|P06865-2|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MSMS UPN48_class_I_Rep_2 6 485.7672119140625 2 485.768197 969.521842 NaN NaN NaN NaN NaN NaN NaN 50.578 1 54.245 53.745 54.745 3.6679 0 0 0 0.40604 1 10338 10338 2.5775 0 1 8711 5596 5293 5298 10894 10894 0.03586158844791498 FMRQLFRY 8 Unmodified _FMRQLFRY_ 0 0 0 REV__ENSG00000119698|ENST00000304338|PPP4R4 REV__ENSG00000119698|ENST00000304338|PPP4R4 MSMS UPN48_class_I_Rep_2 6 580.8057861328125 2 580.805311 1159.59607 NaN NaN NaN NaN NaN NaN NaN 38.18 1 41.897 41.397 42.397 3.7164 0 0 0 0.40746 1 6623 6623 0.69038 0 1 + 8712 18682 5294 5299 10895 10895 0.022655019363128304 FMRTAPKKK 9 Unmodified _FMRTAPKKK_ 0 0 0 REV__L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|66|1|anti-sense REV__L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|66|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.8298950195312 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 79.91 1 83.279 82.779 83.779 3.3694 0 0 0 0.3967 1 19907 19907 1.4819 0.15237 1 + 8713 26241 5295 5300 10896 10896 0.09442361487435846 FMRVRILP 8 Unmodified _FMRVRILP_ 0 0 0 Tigger1_dup345|chr1:86951335-86952248:-|1.2103910746230695|0.0193490625103039|5.97|151.0|52|2|anti-sense Tigger1_dup345|chr1:86951335-86952248:-|1.2103910746230695|0.0193490625103039|5.97|151.0|52|2|anti-sense Tigger1_dup345|chr1:86951335-86952248:-|1.2103910746230695|0.0193490625103039|5.97|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.3140258789062 2 516.312772 1030.61099 NaN NaN NaN NaN NaN NaN NaN 111.31 1 114.98 114.48 115.48 3.6654 0 0 0 0.40738 1 26413 26413 0.79363 0.26887 1 8714 33079 5296 5301 10897 10897 0.0969099380431544 FMSFKNLRK 9 Unmodified _FMSFKNLRK_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|111|1|anti-sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|111|1|anti-sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|111|1|anti-sense MSMS UPN48_class_I_Rep_1 5 585.827880859375 2 585.826243 1169.63793 NaN NaN NaN NaN NaN NaN NaN 71.606 1 75.072 74.572 75.572 3.466 0 0 0 0.38916 1 16753 16753 3.2813 0.28607 1 8715 9015 5297 5302 10898 10898 0.05990057624808287 FMSTYYKIIM 10 Unmodified _FMSTYYKIIM_ 0 0 0 ENSG00000133703.13,KRAS,chr12,-,I2.1,25235227,25245273|58|10.51|1|intron ENSG00000133703.13,KRAS,chr12,-,I2.1,25235227,25245273|58|10.51|1|intron ENSG00000133703.13,KRAS,chr12,-,I2.1,25235227,25245273|58|10.51|1|intron MSMS UPN46_class_I_Rep_3 1 432.8851013183594 3 432.883744 1295.6294 NaN NaN NaN NaN NaN NaN NaN 76.578 1 76.578 76.078 77.078 0 0 0 0 0.53105 1 17871 17871 0.15932 0 1 8716 2811 5298 5303 10899 10899 -0.0065867712667113665 FMTDPQSVSY 10 Unmodified _FMTDPQSVSY_ 0 0 0 L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|36|2|sense L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|36|2|sense L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|36|2|sense MSMS UPN47_class_I_Rep_3 4 587.7606201171875 2 587.757889 1173.50123 NaN NaN NaN NaN NaN NaN NaN 66.4 1 69.586 69.086 70.086 3.1853 0 0 0 0.53105 1 16012 16012 8.1555 1.4324 1 8717 14687 5299 5304 10900 10900 -0.07858521116190786 FMVLRRAA 8 Unmodified _FMVLRRAA_ 0 0 0 nc|ENSG00000196668|Q6ZV60|LINC00173 nc|ENSG00000196668|Q6ZV60|LINC00173 nc|ENSG00000196668|Q6ZV60|LINC00173 MSMS UPN47_class_I_Rep_2 3 482.2810363769531 2 482.281472 962.548391 NaN NaN NaN NaN NaN NaN NaN 28.624 1 32.123 31.623 32.623 3.4986 0 0 0 0.40738 1 4467 4467 0.79363 0 1 8718 16795 5300 5305 10901 10901 0.06561847736099935 FMVMAYDRY 9 Unmodified _FMVMAYDRY_ 0 0 0 ENSG00000183389|ENST00000641156|OR56A4;ENSG00000180934|ENST00000641900|OR56A1;ENSG00000184478|ENST00000641160|OR56A3;nc|ENSG00000180934|Q8NGH5|OR56A1 ENSG00000183389|ENST00000641156|OR56A4 ENSG00000183389|ENST00000641156|OR56A4 MULTI-MSMS UPN47_class_I_Rep_2 3 598.2656860351562 2 598.26737 1194.52019 0.045076 2.6967E-05 -1.1554 -0.00069127 -1.1104 -0.0006643 598.2664588323945 39.478 0.36735 42.856 42.629 42.996 3.3785 25 20 2 0 0 0 0.48846 1 7763 7763 1.8442 0.36234 1 67186 8719 4904 5301 5306 10902 10902 -0.06929263026154331 FMVVFQSI 8 Unmodified _FMVVFQSI_ 0 0 0 ENSG00000123700|ENST00000243457|KCNJ2 ENSG00000123700|ENST00000243457|KCNJ2 ENSG00000123700|ENST00000243457|KCNJ2 MSMS UPN47_class_I_Rep_2 3 485.3008728027344 2 485.756964 969.499375 NaN NaN NaN NaN NaN NaN NaN 116.26 1 119.76 119.26 120.26 3.4965 0 0 0 0.40625 1 28378 28378 2.3027 0.24298 1 8720 2436 5302 5307 10903 10903 0.013405146565105497 FMVVFSLF 8 Unmodified _FMVVFSLF_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MSMS UPN48_class_I_Rep_2 6 495.2651062011719 2 495.261882 988.509211 NaN NaN NaN NaN NaN NaN NaN 100.38 1 104.12 103.62 104.62 3.7417 0 0 0 0.40581 1 23840 23840 2.8892 0 1 8721 3214 5303 5308 10904 10904 0.014497026618869313 FMWDCCCES 9 Unmodified _FMWDCCCES_ 0 0 0 nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX nc|ENSG00000085224|P46100-2|ATRX nc|ENSG00000085224|P46100-2|ATRX MSMS UPN47_class_I_Rep_1 2 562.1710815429688 2 562.171224 1122.32789 NaN NaN NaN NaN NaN NaN NaN 37.258 1 40.923 40.423 41.423 3.6657 0 0 0 0.4029 1 7050 7050 0 0 1 8722 1260 5304 5309 10905 10905 -0.22837669760133394 FMWDCCCES 9 Unmodified _FMWDCCCES_ 0 0 0 nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX nc|ENSG00000085224|P46100-2|ATRX nc|ENSG00000085224|P46100-2|ATRX MSMS UPN47_class_I_Rep_3 4 562.3339233398438 2 562.171224 1122.32789 NaN NaN NaN NaN NaN NaN NaN 15.965 1 19.327 18.827 19.827 3.3619 0 0 0 0.4029 1 920 920 0 0 1 8723 1260 5304 5309 10906 10906 -0.22837669760133394 FMWNFQFR 8 Unmodified _FMWNFQFR_ 0 0 0 REV__MER53_dup5154|chr17:75807892-75808020:+|1.2837059572724785|0.2037384457309212|2.66|151.0|8|3|sense REV__MER53_dup5154|chr17:75807892-75808020:+|1.2837059572724785|0.2037384457309212|2.66|151.0|8|3|sense MSMS UPN47_class_I_Rep_2 3 588.27734375 2 588.276386 1174.53822 NaN NaN NaN NaN NaN NaN NaN 43.591 1 46.949 46.449 47.449 3.358 0 0 0 0.40625 1 9007 9007 2.3027 0 1 + 8724 31437 5305 5310 10907 10907 -0.042067599891424834 FMWRQHHY 8 Unmodified _FMWRQHHY_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|4|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|9|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|8|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN48_class_I_Rep_3 7 602.7765502929688 2 602.777085 1203.53962 NaN NaN NaN NaN NaN NaN NaN 72.218 1 75.744 75.244 76.244 3.5266 0 0 0 0.40746 1 16820 16820 0.69038 0 1 8725 5298 5306 5311 10908 10908 -0.054011259003573286 FMWRYGQVDG 10 Unmodified _FMWRYGQVDG_ 0 0 0 REV__nc|ENSG00000168334|Q702N8-2|XIRP1 REV__nc|ENSG00000168334|Q702N8-2|XIRP1 MSMS UPN47_class_I_Rep_3 4 629.7846069335938 2 629.787315 1257.56008 NaN NaN NaN NaN NaN NaN NaN 35.521 1 38.775 38.275 39.275 3.2547 0 0 0 0.53105 1 6589 6589 1.3295 0.63916 1 + 8726 20269 5307 5312 10909 10909 -0.058400000312303746 FMWWGFLA 8 Unmodified _FMWWGFLA_ 0 0 0 REV__ENSG00000165434|ENST00000298198|PGM2L1 REV__ENSG00000165434|ENST00000298198|PGM2L1 MSMS UPN47_class_I_Rep_2 3 529.2528686523438 2 529.251849 1056.48914 NaN NaN NaN NaN NaN NaN NaN 35.037 1 38.462 37.962 38.962 3.4253 0 0 0 0.40738 1 6409 6409 0.79363 0 1 + 8727 20118 5308 5313 10910 10910 -0.036840482780689854 FMYCWWQCKM 10 Unmodified _FMYCWWQCKM_ 0 0 0 L1MB3_dup11730|chr12:51153448-51154206:-|3.0973726858834985|0.0446468690863931|6.12|151.0|26|3|sense L1MB3_dup11730|chr12:51153448-51154206:-|3.0973726858834985|0.0446468690863931|6.12|151.0|26|3|sense L1MB3_dup11730|chr12:51153448-51154206:-|3.0973726858834985|0.0446468690863931|6.12|151.0|26|3|sense MSMS UPN48_class_I_Rep_1 5 475.8582763671875 3 475.858547 1424.55381 NaN NaN NaN NaN NaN NaN NaN 34.992 1 38.507 38.007 39.007 3.5144 0 0 0 0.53105 1 5667 5667 0.15932 0 1 8728 10323 5309 5314 10911 10911 -0.1414830085027461 FMYEGYFYWIY 11 Unmodified _FMYEGYFYWIY_ 0 0 0 L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|93|1|anti-sense L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|93|1|anti-sense L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|93|1|anti-sense MSMS UPN46_class_I_Rep_3 1 527.7461547851562 3 527.896818 1580.66863 NaN NaN NaN NaN NaN NaN NaN 80.272 1 80.272 79.772 80.772 0 0 0 0 0.38417 1 18902 18902 0.094841 0 1 8729 9399 5310 5315 10912 10912 -0.09848253571431087 FMYFEFPQP 9 Unmodified _FMYFEFPQP_ 0 0 0 ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN ENSG00000171862|ENST00000371953|PTEN ENSG00000171862|ENST00000371953|PTEN MSMS UPN47_class_I_Rep_1 2 603.2296142578125 2 603.270435 1204.52632 NaN NaN NaN NaN NaN NaN NaN 28.688 1 32.454 31.954 32.954 3.7662 0 0 0 0.40038 1 4453 4453 0.6015 0 1 8730 4550 5311 5316 10913 10913 -0.06776421522977216 FMYPQWNQ 8 Unmodified _FMYPQWNQ_ 0 0 0 REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|149|3|anti-sense REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|149|3|anti-sense MSMS UPN46_class_I_Rep_3 1 557.2453002929688 2 557.244752 1112.47495 NaN NaN NaN NaN NaN NaN NaN 118.96 1 118.96 118.46 119.46 0 0 0 0 0.40738 1 29548 29548 0.79363 0 1 + 8731 23301 5312 5317 10914 10914 -0.07678745497037198 FMYSLFTYF 9 Unmodified _FMYSLFTYF_ 0 0 0 L1M1_dup218|chr1:93311596-93312339:+|1.3395805219985144|0.0822310715239993|4.03|151.0|44|2|anti-sense L1M1_dup218|chr1:93311596-93312339:+|1.3395805219985144|0.0822310715239993|4.03|151.0|44|2|anti-sense L1M1_dup218|chr1:93311596-93312339:+|1.3395805219985144|0.0822310715239993|4.03|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_3 7 406.86602783203125 3 406.856183 1217.54672 NaN NaN NaN NaN NaN NaN NaN 60.9 1 64.413 63.913 64.913 3.5129 0 0 0 0.3979 1 13415 13415 1.1933 0 1 8732 8510 5313 5318 10915 10915 -0.0533525086316331 FNDENLRI 8 Unmodified _FNDENLRI_ 0 0 0 nc|ENSG00000100197|P10635-2|CYP2D6;ENSG00000100197|ENST00000645361|CYP2D6;nc|ENSG00000205702|A0A087X1C5|CYP2D7 nc|ENSG00000100197|P10635-2|CYP2D6 nc|ENSG00000100197|P10635-2|CYP2D6 MULTI-MSMS UPN48_class_I_Rep_3 7 510.7590026855469 2 510.759081 1019.50361 0.1842 9.4082E-05 -0.14705 -7.5109E-05 0.037146 1.8973E-05 510.7588994954384 49.904 0.6291 53.525 53.255 53.884 3.621 48 38 2 0 0 0 0.82752 2 10026 10026;10070 7.9102 7.9102 1 144190 8733 1480 5314 5319 10916;10917 10916 -0.00536304596255377 FNDENLRI 8 Unmodified _FNDENLRI_ 0 0 0 nc|ENSG00000100197|P10635-2|CYP2D6;ENSG00000100197|ENST00000645361|CYP2D6;nc|ENSG00000205702|A0A087X1C5|CYP2D7 nc|ENSG00000100197|P10635-2|CYP2D6 nc|ENSG00000100197|P10635-2|CYP2D6 MULTI-MSMS UPN48_class_I_Rep_3 7 510.759033203125 2 510.759081 1019.50361 0.19885 0.00010156 -0.0064225 -3.2804E-06 0.19243 9.8283E-05 510.7590309137988 56.734 0.82953 60.277 59.905 60.735 3.5427 190 80 3 0 0 0 0.82752 1 12107 12107 25.399 0 1 1168700 8734 1480 5314 5319 10918 10918 -0.00536304596255377 FNDLELLF 8 Unmodified _FNDLELLF_ 0 0 0 Tigger20a_dup478|chr6:80339096-80339893:-|1.0594807124354069|0.1667068162866944|2.67|150.0|45|2|anti-sense Tigger20a_dup478|chr6:80339096-80339893:-|1.0594807124354069|0.1667068162866944|2.67|150.0|45|2|anti-sense Tigger20a_dup478|chr6:80339096-80339893:-|1.0594807124354069|0.1667068162866944|2.67|150.0|45|2|anti-sense MSMS UPN48_class_I_Rep_2 6 505.7633056640625 2 505.7633 1009.51205 NaN NaN NaN NaN NaN NaN NaN 78.355 1 81.978 81.478 82.478 3.6222 0 0 0 0.4044 1 18586 18586 4.756 0 1 8735 33329 5315 5320 10919 10919 0.007672493203926933 FNDMLFFF 8 Unmodified _FNDMLFFF_ 0 0 0 REV__L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|36|1|anti-sense REV__L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|36|1|anti-sense MSMS UPN46_class_I_Rep_3 1 540.75537109375 2 540.746596 1079.47864 NaN NaN NaN NaN NaN NaN NaN 33.876 1 33.876 33.376 34.376 0 0 0 0 0.388 1 5980 5980 12.532 2.4576 1 + 8736 27156 5316 5321 10920 10920 -0.05792075723184098 FNDPNAKEM 9 Oxidation (M) _FNDPNAKEM(Oxidation (M))_ FNDPNAKEM(1) FNDPNAKEM(98) 0 0 1 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS UPN46_class_I_Rep_3 1 541.2345581054688 2 541.234581 1080.45461 -0.057459 -3.1099E-05 -0.065868 -3.565E-05 -0.12333 -6.6749E-05 541.2345583386218 22.515 0.66873 22.515 22.287 22.955 0 162 71 3 0 0 0 0.010096 3 2701 2662;2701;2734 97.741 73.72 1 389310 8737 947 5317 5322 10921;10922;10923 10922 21 -0.08239960947503278 FNEKEQSF 8 Unmodified _FNEKEQSF_ 0 0 0 L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|112|2|sense L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|112|2|sense L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|112|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.2396240234375 2 514.737814 1027.46108 0.042944 2.2105E-05 0.25815 0.00013288 0.30109 0.00015498 514.7378836194646 64.623 0.48003 67.879 67.72 68.2 3.2556 55 37 2 0 0 0 0.82752 1 15443 15443 18.146 18.146 1 110140 8738 10241 5318 5323 10924 10924 -0.05155699724468832 FNEKEQSF 8 Unmodified _FNEKEQSF_ 0 0 0 L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|112|2|sense L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|112|2|sense L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|112|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.738037109375 2 514.737814 1027.46108 0.26753 0.00013771 -0.083161 -4.2806E-05 0.18437 9.4902E-05 514.7377510620313 64.806 0.45723 67.985 67.691 68.148 3.1795 56 36 2 0 0 0 0.82752 1 15498 15498 24.021 24.021 1 76880 8739 10241 5318 5323 10925 10925 -0.05155699724468832 FNFKRNCQ 8 Unmodified _FNFKRNCQ_ 0 0 0 L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|183|3|anti-sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|183|3|anti-sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|183|3|anti-sense MSMS UPN47_class_I_Rep_3 4 528.7562255859375 2 528.755818 1055.49708 NaN NaN NaN NaN NaN NaN NaN 114.24 1 117.73 117.23 118.23 3.4963 0 0 0 0.40604 1 28043 28043 2.5775 0 1 8740 11912 5319 5324 10926 10926 -0.02844521028600866 FNFLRRRV 8 Unmodified _FNFLRRRV_ 0 0 0 REV__L1PREC2_dup6659|chr15:72080604-72085112:-|3.747538229361434|0.0603144834673881|5.96|151.0|233|2|anti-sense REV__L1PREC2_dup6659|chr15:72080604-72085112:-|3.747538229361434|0.0603144834673881|5.96|151.0|233|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.8308715820312 2 554.330342 1106.64613 0.4949 0.00027434 -2.0972 -0.0011626 -1.6023 -0.00088821 554.8307065795702 112.88 0.076752 116.54 116.5 116.58 3.6648 11 7 2 0 0 0 0.82752 1 26917 26917 0.69038 0.16561 1 28926 + 8741 30747 5320 5325 10927 10927 0.09707372656475854 FNFVGKLL 8 Unmodified _FNFVGKLL_ 0 0 0 nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2 nc|ENSG00000131773|O75525-2|KHDRBS3 nc|ENSG00000131773|O75525-2|KHDRBS3 MULTI-MSMS UPN46_class_I_Rep_3 1 469.2787780761719 2 469.278921 936.543289 0.20005 9.388E-05 -0.51735 -0.00024278 -0.3173 -0.0001489 469.2784908748882 73.224 0.58459 73.224 72.869 73.454 0 101 63 3 0 0 0 0.82752 3 16903 16903;16944;16979 54.774 0 1 350890 8742 2004 5321 5326 10928;10929;10930 10928 0.07247867145144937 FNFVGKLL 8 Unmodified _FNFVGKLL_ 0 0 0 nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2 nc|ENSG00000131773|O75525-2|KHDRBS3 nc|ENSG00000131773|O75525-2|KHDRBS3 MSMS UPN46_class_I_Rep_3 1 469.27667236328125 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 73.412 1 73.412 72.912 73.912 0 0 0 0 0.33027 1 17014 17014 26.884 0 1 8743 2004 5321 5326 10931 10931 0.07247867145144937 FNFVGKLL 8 Unmodified _FNFVGKLL_ 0 0 0 nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2 nc|ENSG00000131773|O75525-2|KHDRBS3 nc|ENSG00000131773|O75525-2|KHDRBS3 MULTI-MSMS UPN48_class_I_Rep_1 5 469.27874755859375 2 469.278921 936.543289 0.15633 7.3361E-05 -0.30251 -0.00014196 -0.14618 -6.8599E-05 469.27869374909574 66.643 0.44047 70.094 69.792 70.232 3.4516 56 29 2 0 0 0 0.82752 3 15273 15196;15234;15273 97.075 0 1 797510 8744 2004 5321 5326 10932;10933;10934 10934 0.07247867145144937 FNFVGKLL 8 Unmodified _FNFVGKLL_ 0 0 0 nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2 nc|ENSG00000131773|O75525-2|KHDRBS3 nc|ENSG00000131773|O75525-2|KHDRBS3 MSMS UPN48_class_I_Rep_1 5 469.2788391113281 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 66.829 1 70.281 69.781 70.781 3.4516 0 0 0 0.01395 1 15311 15311 57.471 0 1 8745 2004 5321 5326 10935 10935 0.07247867145144937 FNFVGKLL 8 Unmodified _FNFVGKLL_ 0 0 0 nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2 nc|ENSG00000131773|O75525-2|KHDRBS3 nc|ENSG00000131773|O75525-2|KHDRBS3 MSMS UPN48_class_I_Rep_1 5 469.2776184082031 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 66.959 1 70.41 69.91 70.91 3.4516 0 0 0 0.01395 1 15351 15351 57.471 0 1 8746 2004 5321 5326 10936 10936 0.07247867145144937 FNFVGKLL 8 Unmodified _FNFVGKLL_ 0 0 0 nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2 nc|ENSG00000131773|O75525-2|KHDRBS3 nc|ENSG00000131773|O75525-2|KHDRBS3 MULTI-MSMS UPN48_class_I_Rep_3 7 469.2785949707031 2 469.278921 936.543289 0.24542 0.00011517 -0.24819 -0.00011647 -0.0027743 -1.3019E-06 469.2786396761854 66.482 0.92039 69.99 69.582 70.502 3.5077 118 63 3 0 0 0 0.82752 4 15001 15001;15038;15077;15115 74.423 0 1 721830 8747 2004 5321 5326 10937;10938;10939;10940 10937 0.07247867145144937 FNFVVRAL 8 Unmodified _FNFVVRAL_ 0 0 0 L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|56|1|anti-sense L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|56|1|anti-sense L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|56|1|anti-sense MSMS UPN46_class_I_Rep_3 1 483.28192138671875 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 73.602 1 73.602 73.102 74.102 0 0 0 0 0.39996 1 17067 17067 7.9102 0 1 8748 9314 5322 5327 10941 10941 0.06574385376666214 FNFVVRAL 8 Unmodified _FNFVVRAL_ 0 0 0 L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|56|1|anti-sense L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|56|1|anti-sense L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_2 6 483.2798767089844 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 67.301 1 70.798 70.298 71.298 3.4964 0 0 0 0.3903 1 15444 15444 11.64 0 1 8749 9314 5322 5327 10942 10942 0.06574385376666214 FNFYWTPW 8 Unmodified _FNFYWTPW_ 0 0 0 REV__L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|118|3|sense REV__L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|118|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 580.7633666992188 2 580.763635 1159.51272 0.045893 2.6653E-05 2.6138 0.001518 2.6597 0.0015447 580.7646604878609 33.631 0.48565 37.071 36.826 37.312 3.4398 49 30 2 0 0 0 0.82752 1 6016 6016 2.5775 0.73324 1 67540 + 8750 25293 5323 5328 10943 10943 -0.060659112399207515 FNGWYSVE 8 Unmodified _FNGWYSVE_ 0 0 0 ENST00000565271.1_1_17:74668237-74668399:+|nuORF ENST00000565271.1_1_17:74668237-74668399:+|nuORF ENST00000565271.1_1_17:74668237-74668399:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.8867492675781 2 501.2218 1000.42905 NaN NaN NaN NaN NaN NaN NaN 81.708 1 85.284 84.784 85.784 3.5753 0 0 0 0.40625 1 19491 19491 2.3027 0 1 8751 7484 5324 5329 10944 10944 -0.07115067407619335 FNHQNFSSN 9 Unmodified _FNHQNFSSN_ 0 0 0 Tigger20a_dup1209|chr18:9945950-9946170:-|1.0104052504232093|0.1992892990858468|2.34|151.0|4|2|sense Tigger20a_dup1209|chr18:9945950-9946170:-|1.0104052504232093|0.1992892990858468|2.34|151.0|4|2|sense Tigger20a_dup1209|chr18:9945950-9946170:-|1.0104052504232093|0.1992892990858468|2.34|151.0|4|2|sense MSMS UPN48_class_I_Rep_1 5 547.7371215820312 2 547.736137 1093.45772 NaN NaN NaN NaN NaN NaN NaN 23.854 1 27.42 26.92 27.92 3.5655 0 0 0 0.39598 1 2548 2548 1.6526 0 1 8752 33328 5325 5330 10945 10945 -0.0852694977847932 FNHRQLFM 8 Unmodified _FNHRQLFM_ 0 0 0 REV__L1PA16_dup5979|chr7:37761997-37762614:+|1.0287353358155475|0.1279445630860083|3.01|151.0|34|2|anti-sense REV__L1PA16_dup5979|chr7:37761997-37762614:+|1.0287353358155475|0.1279445630860083|3.01|151.0|34|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.77490234375 2 546.774011 1091.53347 NaN NaN NaN NaN NaN NaN NaN 26.494 1 30.257 29.757 30.757 3.7624 0 0 0 0.40604 1 3798 3798 2.5775 0 1 + 8753 29393 5326 5331 10946 10946 -0.008636441318913057 FNHRYPFF 8 Unmodified _FNHRYPFF_ 0 0 0 L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|291|2|anti-sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|355|3|anti-sense;L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|176|1|anti-sense L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|291|2|anti-sense L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|291|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2731323242188 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 20.901 1 24.447 23.947 24.947 3.5454 0 0 0 0.40738 1 1832 1832 0.79363 0 1 8754 14443 5327 5332 10947 10947 -0.023356867714937835 FNIFKWMMF 9 Unmodified _FNIFKWMMF_ 0 0 0 REV__nc|ENSG00000067167|Q15629-2|TRAM1 REV__nc|ENSG00000067167|Q15629-2|TRAM1 MSMS UPN48_class_I_Rep_2 6 632.306396484375 2 632.306298 1262.59804 NaN NaN NaN NaN NaN NaN NaN 48.244 1 51.98 51.48 52.48 3.7361 0 0 0 0.40038 1 9618 9618 0.6015 0 1 + 8755 17775 5328 5333 10948 10948 -0.022752053701196928 FNIFVIADLK 10 Unmodified _FNIFVIADLK_ 0 0 0 L1M4_dup14602|chr12:38727489-38728727:+|1.1349441041042072|0.1833904508830964|2.63|127.0|49|1|anti-sense L1M4_dup14602|chr12:38727489-38728727:+|1.1349441041042072|0.1833904508830964|2.63|127.0|49|1|anti-sense L1M4_dup14602|chr12:38727489-38728727:+|1.1349441041042072|0.1833904508830964|2.63|127.0|49|1|anti-sense MSMS UPN48_class_I_Rep_2 6 590.342041015625 2 590.342249 1178.66995 NaN NaN NaN NaN NaN NaN NaN 53.847 1 57.428 56.928 57.928 3.5817 0 0 0 0.53105 1 11324 11324 1.3295 0 1 8756 8843 5329 5334 10949 10949 0.08775748579591891 FNIGIRRSSK 10 Unmodified _FNIGIRRSSK_ 0 0 0 REV__Tigger1_dup160|chr1:40726716-40727195:-|1.128947268364918|0.0266726836357405|5.4|151.0|31|3|anti-sense REV__Tigger1_dup160|chr1:40726716-40727195:-|1.128947268364918|0.0266726836357405|5.4|151.0|31|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3429565429688 2 589.343646 1176.67274 0.54486 0.00032111 -1.095 -0.00064532 -0.55012 -0.00032421 589.3427193667868 87.983 0.17442 87.983 87.885 88.06 0 26 18 3 0 0 0 0.56333 1 21114 21114 1.4819 0.28856 1 233140 + 8757 32382 5330 5335 10950 10950 0.09147016757128767 FNIHLHHVKPL 11 Unmodified _FNIHLHHVKPL_ 0 0 0 REV__ENST00000562914.1_1_16:56966069-56969248:+|nuORF REV__ENST00000562914.1_1_16:56966069-56969248:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 452.263671875 3 452.262935 1353.76697 0.17974 8.129E-05 -0.0043229 -1.9551E-06 0.17542 7.9335E-05 452.262979216617 60.629 0.81577 64.103 63.514 64.33 3.4737 87 59 2 0 0 0 0.68132 1 13340 13340 0.40827 0.078994 1 160540 + 8758 23037 5331 5336 10951 10951 0.1042415557926688 FNILIYATY 9 Unmodified _FNILIYATY_ 0 0 0 REV__Tigger2_dup2484|chr17:20414390-20414594:-|1.0255612039892743|0.1511176556132147|2.76|146.0|1|1|sense REV__Tigger2_dup2484|chr17:20414390-20414594:-|1.0255612039892743|0.1511176556132147|2.76|146.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 559.3109130859375 2 559.30005 1116.58555 NaN NaN NaN NaN NaN NaN NaN 53.8 1 57.384 56.884 57.884 3.5836 0 0 0 0.26661 1 11248 11248 12.532 3.9383 1 + 8759 32658 5332 5337 10952 10952 0.03191797762860915 FNIWKKLFV 9 Unmodified _FNIWKKLFV_ 0 0 0 nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91 nc|nan|Q3C1V1-2|C11orf91 nc|nan|Q3C1V1-2|C11orf91 MSMS UPN47_class_I_Rep_3 4 597.85595703125 2 597.855327 1193.6961 NaN NaN NaN NaN NaN NaN NaN 85.26 1 88.632 88.132 89.132 3.3716 0 0 0 0.38478 1 21369 21369 4.3292 0 1 8760 5552 5333 5338 10953 10953 0.1070006254171858 FNIWKKLFV 9 Unmodified _FNIWKKLFV_ 0 0 0 nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91 nc|nan|Q3C1V1-2|C11orf91 nc|nan|Q3C1V1-2|C11orf91 MSMS UPN48_class_I_Rep_1 5 597.8563842773438 2 597.855327 1193.6961 NaN NaN NaN NaN NaN NaN NaN 84.9 1 88.506 88.006 89.006 3.6059 0 0 0 0.36505 1 20317 20317 7.2892 1.5574 1 8761 5552 5333 5338 10954 10954 0.1070006254171858 FNIWKKLFV 9 Unmodified _FNIWKKLFV_ 0 0 0 nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91 nc|nan|Q3C1V1-2|C11orf91 nc|nan|Q3C1V1-2|C11orf91 MULTI-MSMS UPN48_class_I_Rep_3 7 597.855712890625 2 597.855327 1193.6961 0.55521 0.00033193 1.6954 0.0010136 2.2506 0.0013455 597.8559749806135 84.951 0.1184 88.7 88.622 88.74 3.7493 22 17 2 0 0 0 0.46434 1 20149 20149 4.3292 0.38484 1 464110 8762 5552 5333 5338 10955 10955 0.1070006254171858 FNIWYKIQ 8 Unmodified _FNIWYKIQ_ 0 0 0 REV__L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|15|1|sense REV__L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 556.2989501953125 2 556.300384 1110.58622 NaN NaN NaN NaN NaN NaN NaN 60.683 1 64.196 63.696 64.696 3.5128 0 0 0 0.39996 1 13352 13352 7.9102 1.187 1 + 8763 28455 5334 5339 10956 10956 0.03534637202551494 FNKFWFGF 8 Unmodified _FNKFWFGF_ 0 0 0 L1M8_dup372|chr3:197096646-197097520:-|1.4493842653294815|0.0467631337597217|4.95|151.0|63|2|anti-sense L1M8_dup372|chr3:197096646-197097520:-|1.4493842653294815|0.0467631337597217|4.95|151.0|63|2|anti-sense L1M8_dup372|chr3:197096646-197097520:-|1.4493842653294815|0.0467631337597217|4.95|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7506103515625 2 546.76872 1091.52289 NaN NaN NaN NaN NaN NaN NaN 28.272 1 31.771 31.271 32.271 3.4986 0 0 0 0.40738 1 4364 4364 0.79363 0 1 8764 9247 5335 5340 10957 10957 -0.019213035146776747 FNKIEVHTSE 10 Unmodified _FNKIEVHTSE_ 0 0 0 REV__ENSG00000172123|ENST00000304905|SLFN12 REV__ENSG00000172123|ENST00000304905|SLFN12 MULTI-MSMS UPN47_class_I_Rep_1 2 602.3050537109375 2 602.303852 1202.59315 0.37661 0.00022684 0.15548 9.3646E-05 0.53209 0.00032048 602.3038288547916 65.52 1.0189 68.876 68.476 69.495 3.3557 148 59 4 0 0 0 0.54822 1 15782 15782 5.7319 5.7319 1 847700 + 8765 20436 5336 5341 10958 10958 -4.0947075376607245E-05 FNKIKIFYHIY 11 Unmodified _FNKIKIFYHIY_ 0 0 0 REV__L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|26|3|sense REV__L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 496.29534912109375 3 495.946612 1484.81801 NaN NaN NaN NaN NaN NaN NaN 36.274 1 36.274 35.774 36.774 0 0 0 0 0.38417 1 6706 6706 1.3296 0 1 + 8766 26022 5337 5342 10959 10959 0.09499059833478896 FNKIQHPL 8 Unmodified _FNKIQHPL_ 0 0 0 L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|2|1|sense;L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|50|2|sense;L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|20|1|sense;L1MDa_dup638|chr2:87609028-87610835:+|1.2335513220373229|0.0254736515307267|5.6|151.0|20|1|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|160|3|sense;L1PA10_dup1619|chr4:48397500-48400388:-|1.6812766330867688|0.0510749619792224|5.04|150.0|39|2|sense;L1PA8A_dup160|chr1:247133953-247136664:+|12.405055359153076|0.4971293307696565|4.64|151.0|23|1|sense;L1PA14_dup2736|chr15:56414245-56418496:-|1.5334531755387295|0.4046085168545109|1.92|151.0|115|3|sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|2|1|sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 498.7862243652344 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 69.208 1 72.576 72.076 73.076 3.3678 0 0 0 0.40604 1 16755 16755 2.5775 0 1 8767 12147 5338 5343 10960 10960 0.05729483888330833 FNKKGKRN 8 Unmodified _FNKKGKRN_ 0 0 0 REV__L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|3|1|sense REV__L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.292724609375 2 496.293425 990.572297 -0.34259 -0.00017002 -0.42004 -0.00020846 -0.76263 -0.00037849 496.2931815803873 14.775 0.25996 18.25 18.151 18.411 3.475 42 27 2 0 0 0 0.82752 1 641 641 2.3027 0 1 34228 + 8768 24538 5339 5344 10961 10961 0.0766340449413292 FNKKGKRN 8 Unmodified _FNKKGKRN_ 0 0 0 REV__L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|3|1|sense REV__L1M4b_dup2877|chr10:38029785-38030054:+|1.193516270600613|0.0522534995468377|4.51|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 496.293425 990.572297 -0.14279 -7.0868E-05 -0.47253 -0.00023451 -0.61532 -0.00030538 496.29308246150254 14.896 0.21927 18.282 18.187 18.406 3.3864 -0.0034256 -9.4198E-05 NaN 2.3027 36 24 2 NaN NaN NaN NaN 0 NaN NaN 0 26895 + 8769 24538 5339 5344 0.0766340449413292 FNKLEETEI 9 Unmodified _FNKLEETEI_ 0 0 0 REV__nc|ENSG00000104327|P05937-2|CALB1 REV__nc|ENSG00000104327|P05937-2|CALB1 MULTI-MSMS UPN47_class_I_Rep_3 4 561.7877197265625 2 561.787504 1121.56045 0.43227 0.00024284 1.0807 0.00060712 1.513 0.00084996 561.7875668178887 64.957 0.66588 68.137 67.664 68.329 3.1795 113 52 3 0 0 0 0.052902 1 15562 15562 47.749 3.8904 1 354470 + 8770 18254 5340 5345 10962 10962 0.0045369816962193 FNKLHILIVD 10 Unmodified _FNKLHILIVD_ 0 0 0 REV__nc|ENSG00000089472|Q9BQS7-2|HEPH REV__nc|ENSG00000089472|Q9BQS7-2|HEPH MULTI-MSMS UPN46_class_I_Rep_3 1 606.36083984375 2 606.360973 1210.70739 0.60693 0.00036802 0.62368 0.00037818 1.2306 0.0007462 606.3606891550822 109.69 0.56599 109.69 109.56 110.13 0 113 46 3 0 0 0 0.56033 1 27035 27035 3.5965 0.31518 1 4091400 + 8771 18006 5341 5346 10963 10963 0.11046839845243994 FNKLKFFLNLA 11 Unmodified _FNKLKFFLNLA_ 0 0 0 REV__ENSG00000122218|ENST00000241704|COPA REV__ENSG00000122218|ENST00000241704|COPA MULTI-MSMS UPN48_class_I_Rep_1 5 452.2669677734375 3 452.267574 1353.78089 0.014328 6.48E-06 -1.4651 -0.00066263 -1.4508 -0.00065615 452.26688139729157 91.788 0.14263 95.414 95.377 95.52 3.626 20 16 2 0 0 0 0.6724 1 22053 22053 1.2148 0.4383 1 323790 + 8772 18744 5342 5347 10964 10964 0.11815388287732276 FNKPHYYQL 9 Unmodified _FNKPHYYQL_ 0 0 0 ENSG00000249715|ENST00000624922|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 MULTI-SECPEP UPN48_class_I_Rep_2 6 604.7685546875 2 605.306198 1208.59784 0.54206 0.00032811 0.33736 0.00020421 0.87942 0.00053232 605.3065364747024 61.82 0.31221 65.294 65.211 65.523 3.4738 39 24 2 0 0 0 0.11959 1 13749 13749 7.9102 0 1 82430 8773 5736 5343 5348 10965 10965 0.0018883422590079135 FNKRRRKY 8 Unmodified _FNKRRRKY_ 0 0 0 HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|131|1|anti-sense;HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|71|1|anti-sense;HERVL-int_dup2137|chr17:31187495-31188574:+|1.1947335693420549|0.0634463472672405|4.24|151.0|39|1|anti-sense;HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|174|1|anti-sense;HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|210|2|anti-sense;HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|227|2|anti-sense HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|131|1|anti-sense HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|131|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3477172851562 2 584.346523 1166.67849 0.10573 6.1783E-05 2.4732 0.0014452 2.5789 0.001507 584.3477280336131 22.798 0.072733 22.798 22.78 22.853 0 11 7 2 0 0 0 0.82752 1 2766 2766 0.69038 0 1 44237 8774 8362 5344 5349 10966 10966 0.10182160059480339 FNLFHFFFY 9 Unmodified _FNLFHFFFY_ 0 0 0 REV__L1M3_dup5949|chr17:39306326-39306673:-|1.0497610298242854|0.0273800500745204|5.26|151.0|22|3|anti-sense REV__L1M3_dup5949|chr17:39306326-39306673:-|1.0497610298242854|0.0273800500745204|5.26|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_3 4 641.308837890625 2 641.30821 1280.60187 NaN NaN NaN NaN NaN NaN NaN 42.119 1 45.358 44.858 45.858 3.2394 0 0 0 0.40038 1 8611 8611 0.6015 0 1 + 8775 24302 5345 5350 10967 10967 -0.027210762803861144 FNLKPLRFK 9 Unmodified _FNLKPLRFK_ 0 0 0 L1MB8_dup9887|chr10:14911537-14912048:+|2.0396693909155488|0.4611005725081737|2.15|151.0|2|1|sense L1MB8_dup9887|chr10:14911537-14912048:+|2.0396693909155488|0.4611005725081737|2.15|151.0|2|1|sense L1MB8_dup9887|chr10:14911537-14912048:+|2.0396693909155488|0.4611005725081737|2.15|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 581.8607177734375 2 581.858401 1161.70225 NaN NaN NaN NaN NaN NaN NaN 105.69 1 109.38 108.88 109.88 3.6901 0 0 0 0.39428 1 25001 25001 2.0598 1.4583 1 8776 11044 5346 5351 10968 10968 0.1278658077324053 FNLVWLYCF 9 Unmodified _FNLVWLYCF_ 0 0 0 REV__L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|96|1|anti-sense REV__L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|96|1|anti-sense MSMS UPN48_class_I_Rep_1 5 602.7977294921875 2 602.79662 1203.57869 NaN NaN NaN NaN NaN NaN NaN 65.633 1 69.085 68.585 69.585 3.4516 0 0 0 0.38478 1 14947 14947 4.3292 0 1 + 8777 26700 5347 5352 10969 10969 -0.01495838389405435 FNLVWLYCF 9 Unmodified _FNLVWLYCF_ 0 0 0 REV__L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|96|1|anti-sense REV__L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|96|1|anti-sense MSMS UPN48_class_I_Rep_1 5 602.796630859375 2 602.79662 1203.57869 NaN NaN NaN NaN NaN NaN NaN 65.905 1 69.356 68.856 69.856 3.4516 0 0 0 0.38478 1 15029 15029 4.3292 1.0479 1 + 8778 26700 5347 5352 10970 10970 -0.01495838389405435 FNMWKRKL 8 Unmodified _FNMWKRKL_ 0 0 0 L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|17|2|sense L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|17|2|sense L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 561.8157348632812 2 561.815679 1121.6168 NaN NaN NaN NaN NaN NaN NaN 63.798 1 67.307 66.807 67.807 3.5083 0 0 0 0.40746 1 14292 14292 0.69038 0 1 8779 11942 5348 5353 10971 10971 0.060860923159452796 FNQHFFCF 8 Unmodified _FNQHFFCF_ 0 0 0 REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|82|2|anti-sense REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 545.2332763671875 2 545.234187 1088.45382 NaN NaN NaN NaN NaN NaN NaN 31.106 1 34.405 33.905 34.905 3.2991 0 0 0 0.40738 1 5257 5257 0.79363 0 1 + 8780 24226 5349 5354 10972 10972 -0.08686710805886833 FNQNKNRY 8 Unmodified _FNQNKNRY_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-MSMS UPN47_class_I_Rep_2 3 542.2682495117188 2 542.270147 1082.52574 0.0071661 3.886E-06 -1.3368 -0.00072488 -1.3296 -0.000721 542.2692219658943 30.01 0.25557 33.492 33.419 33.674 3.4821 30 22 2 0 0 0 0.82752 1 4919 4919 5.2307 0.47466 1 68519 8781 1214 5350 5355 10973 10973 -0.012220801278090221 FNQTKKKS 8 Unmodified _FNQTKKKS_ 0 0 0 REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|212|3|sense REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|212|3|sense MSMS UPN48_class_I_Rep_3 7 490.7825927734375 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 111.64 1 115.3 114.8 115.8 3.6614 0 0 0 0.40643 1 26504 26504 2.0598 1.2661 1 + 8782 30455 5351 5356 10974 10974 0.054488761630864246 FNRFHWIF 8 Unmodified _FNRFHWIF_ 0 0 0 REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|455|3|anti-sense REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|455|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 583.3763427734375 2 583.798343 1165.58213 0.085903 5.015E-05 -1.4684 -0.00085728 -1.3825 -0.00080713 583.7975428996721 42.355 0.63547 45.595 45.4 46.036 3.2394 57 42 2 0 0 0 0.82752 1 8800 8800 0.69038 0.088878 1 74561 + 8783 30610 5352 5357 10975 10975 0.005965924995052774 FNRQLRLMFG 10 Unmodified _FNRQLRLMFG_ 0 0 0 REV__Tigger17c_dup719|chr19:7415876-7416116:+|1.8345393110929915|0.0046515584520159|8.62|151.0|14|3|anti-sense REV__Tigger17c_dup719|chr19:7415876-7416116:+|1.8345393110929915|0.0046515584520159|8.62|151.0|14|3|anti-sense MSMS UPN47_class_I_Rep_1 2 641.68359375 2 641.347874 1280.6812 NaN NaN NaN NaN NaN NaN NaN 44.514 1 48.209 47.709 48.709 3.6951 0 0 0 0.53105 1 9262 9262 1.4819 0.15237 1 + 8784 32612 5353 5358 10976 10976 0.052082474020835434 FNSENIFYM 9 Unmodified _FNSENIFYM_ 0 0 0 L1MB7_dup12267|chrX:72401835-72402726:-|2.7381992645510995|0.0443366464335216|5.95|151.0|68|3|anti-sense L1MB7_dup12267|chrX:72401835-72402726:-|2.7381992645510995|0.0443366464335216|5.95|151.0|68|3|anti-sense L1MB7_dup12267|chrX:72401835-72402726:-|2.7381992645510995|0.0443366464335216|5.95|151.0|68|3|anti-sense MSMS UPN46_class_I_Rep_3 1 582.7533569335938 2 582.755149 1163.49575 NaN NaN NaN NaN NaN NaN NaN 118.11 1 118.11 117.61 118.61 0 0 0 0 0.39518 1 29305 29305 1.8442 0 1 8785 10690 5354 5359 10977 10977 -0.07946199908042217 FNSSIENNSC 10 Unmodified _FNSSIENNSC_ 0 0 0 L1MB8_dup7111|chr8:42285760-42286096:+|1.1850881672677331|0.1361745010800372|3.12|151.0|16|1|anti-sense L1MB8_dup7111|chr8:42285760-42286096:+|1.1850881672677331|0.1361745010800372|3.12|151.0|16|1|anti-sense L1MB8_dup7111|chr8:42285760-42286096:+|1.1850881672677331|0.1361745010800372|3.12|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.7052612304688 2 557.72712 1113.43969 NaN NaN NaN NaN NaN NaN NaN 118.63 1 118.63 118.13 119.13 0 0 0 0 0.53105 1 29453 29453 1.4819 0.15237 1 8786 11030 5355 5360 10978 10978 -0.11249452815491168 FNTAVLSRP 9 Unmodified _FNTAVLSRP_ 0 0 0 REV__L1MB3_dup4011|chr4:26376104-26377045:-|1.237815281609475|0.0174201535107932|6.15|151.0|51|2|anti-sense REV__L1MB3_dup4011|chr4:26376104-26377045:-|1.237815281609475|0.0174201535107932|6.15|151.0|51|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 503.1074523925781 2 502.779816 1003.54508 0.26074 0.00013109 0.61467 0.00030904 0.8754 0.00044014 502.78005052985816 49.436 0.62144 49.436 49.208 49.83 0 103 69 2 0 0 0 0.11198 1 10358 10358 15.248 1.3424 1 444850 + 8787 25885 5356 5361 10979 10979 0.04344876163099798 FNTSIHFFFFF 11 Unmodified _FNTSIHFFFFF_ 0 0 0 REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|181|3|anti-sense REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|181|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.2362365722656 3 485.236163 1452.68666 -0.29386 -0.00014259 0.47417 0.00023008 0.18031 8.7492E-05 485.2362424297793 34.358 0.42853 38.044 37.789 38.218 3.6859 36 31 2 0 0 0 0.66092 1 6156 6156 2.2527 0.34635 1 75681 + 8788 28640 5357 5362 10980 10980 -0.02157750534479419 FNVKKRSP 8 Unmodified _FNVKKRSP_ 0 0 0 REV__ENSG00000102021|ENST00000371920|LUZP4 REV__ENSG00000102021|ENST00000371920|LUZP4 MULTI-MSMS UPN46_class_I_Rep_3 1 488.2911376953125 2 488.290351 974.566149 0.2891 0.00014116 -1.9801 -0.00096688 -1.691 -0.00082572 488.2893319155345 107.99 0.39494 107.99 107.9 108.29 0 57 31 2 0 0 0 0.82752 6 26338 26338;26351;26376;26416;26429;26460 11.64 3.7301 1 78745000 + 8789 18185 5358 5363 10981;10982;10983;10984;10985;10986 10981 0.07784886262618329 FNWGHCNLL 9 Unmodified _FNWGHCNLL_ 0 0 0 REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|128|1|anti-sense REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|128|1|anti-sense MSMS UPN48_class_I_Rep_2 6 551.843994140625 2 552.258194 1102.50183 NaN NaN NaN NaN NaN NaN NaN 76.482 1 80.083 79.583 80.583 3.6011 0 0 0 0.38639 1 18057 18057 3.9444 0 1 + 8790 27304 5359 5364 10987 10987 -0.04531636885826629 FNYKFQLQ 8 Unmodified _FNYKFQLQ_ 0 0 0 MSTB-int_dup673|chr12:89648104-89649715:+|2.926546428287266|0.0656254912614785|5.48|151.0|100|3|anti-sense MSTB-int_dup673|chr12:89648104-89649715:+|2.926546428287266|0.0656254912614785|5.48|151.0|100|3|anti-sense MSTB-int_dup673|chr12:89648104-89649715:+|2.926546428287266|0.0656254912614785|5.48|151.0|100|3|anti-sense MSMS UPN47_class_I_Rep_3 4 544.247314453125 2 544.282192 1086.54983 NaN NaN NaN NaN NaN NaN NaN 49.659 1 52.886 52.386 53.386 3.2262 0 0 0 0.40625 1 10903 10903 2.3027 0 1 8791 16578 5360 5365 10988 10988 0.010017603058486202 FNYKQGLQGN 10 Unmodified _FNYKQGLQGN_ 0 0 0 REV__HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|12|1|sense REV__HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 584.7890625 2 584.790912 1167.56727 NaN NaN NaN NaN NaN NaN NaN 14.786 1 18.321 17.821 18.821 3.5341 0 0 0 0.53105 1 483 483 1.4819 0.8804 1 + 8792 23602 5361 5366 10989 10989 -0.009809441591414725 FNYLHKESKKR 11 Unmodified _FNYLHKESKKR_ 0 0 0 REV__HAL1_dup17115|chr12:118323803-118324329:+|4.5084252167882095|0.0209569160724583|7.75|151.0|17|3|sense REV__HAL1_dup17115|chr12:118323803-118324329:+|4.5084252167882095|0.0209569160724583|7.75|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 483.93682861328125 3 483.936887 1448.78883 0.13849 6.7021E-05 -0.36792 -0.00017805 -0.22943 -0.00011103 483.9366746846736 38.306 0.95899 41.966 41.557 42.516 3.6595 235 90 3 0 0 0 0.68024 1 6513 6513 0.50596 0 1 470780 + 8793 23374 5362 5367 10990 10990 0.08238915537140201 FNYPYPQIY 9 Unmodified _FNYPYPQIY_ 0 0 0 nc|ENSG00000117560|P48023-2|FASLG;ENSG00000117560|ENST00000367721|FASLG nc|ENSG00000117560|P48023-2|FASLG nc|ENSG00000117560|P48023-2|FASLG MULTI-SECPEP UPN47_class_I_Rep_3 4 602.8165283203125 2 602.787307 1203.56006 0.42428 0.00025575 -2.851 -0.0017185 -2.4267 -0.0014628 602.7856435809709 63.411 0.11819 66.581 66.483 66.601 3.1698 11 8 2 0 0 0 0.12321 1 15100 15100 3.9444 0.66309 1 54613 8794 2224 5363 5368 10991 10991 -0.03357676759583228 FPAEFYQTF 9 Unmodified _FPAEFYQTF_ 0 0 0 L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 575.2659912109375 2 575.266207 1148.51786 0.43395 0.00024964 0.14394 8.2803E-05 0.57789 0.00033244 575.2661259951193 77.374 0.40631 80.896 80.765 81.171 3.5221 45 33 2 0 0 0 0.32682 1 18393 18393 12.241 2.1667 1 160320 8795 9328 5364 5369 10992 10992 -0.05045652167973458 FPAEFYQTF 9 Unmodified _FPAEFYQTF_ 0 0 0 L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 575.266207 1148.51786 0.43395 0.00024964 0.14394 8.2803E-05 0.57789 0.00033244 575.2661259951193 77.374 0.40631 80.896 80.765 81.171 3.5221 -0.016792 0.00027816 NaN 12.241 45 33 2 NaN NaN NaN NaN 0 NaN NaN 0 160320 8796 9328 5364 5369 -0.05045652167973458 FPAEFYQTF 9 Unmodified _FPAEFYQTF_ 0 0 0 L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 575.266207 1148.51786 0.47475 0.00027311 -0.033187 -1.9091E-05 0.44157 0.00025402 575.7677218132094 77.308 0.52244 80.92 80.658 81.18 3.6116 0.0065557 7.4376E-05 NaN 12.241 89 50 2 NaN NaN NaN NaN 0 NaN NaN 0 129460 8797 9328 5364 5369 -0.05045652167973458 FPAEFYQTF 9 Unmodified _FPAEFYQTF_ 0 0 0 L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|27|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 575.266207 1148.51786 0.51752 0.00029771 -0.20519 -0.00011804 0.31233 0.00017967 575.2660102564739 77.322 0.51707 80.923 80.63 81.147 3.6016 0.010236 -0.00012352 NaN 12.241 74 43 2 NaN NaN NaN NaN 0 NaN NaN 0 114170 8798 9328 5364 5369 -0.05045652167973458 FPARFRSV 8 Unmodified _FPARFRSV_ 0 0 0 REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|182|3|anti-sense REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|182|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.2763977050781 2 490.277244 978.539935 NaN NaN NaN NaN NaN NaN NaN 62.488 1 65.95 65.45 66.45 3.4625 0 0 0 0.40472 1 13989 13989 4.3292 1.0479 1 + 8799 30436 5365 5370 10993 10993 0.04980617091132444 FPCICWLHR 9 Unmodified _FPCICWLHR_ 0 0 0 L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|171|1|anti-sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|171|1|anti-sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|171|1|anti-sense MSMS UPN48_class_I_Rep_2 6 587.7855834960938 2 587.786064 1173.55758 NaN NaN NaN NaN NaN NaN NaN 28.577 1 32.209 31.709 32.709 3.6311 0 0 0 0.40038 1 3949 3949 0.6015 0 1 8800 14676 5366 5371 10994 10994 -0.022261269698901742 FPCSDVYVIG 10 Unmodified _FPCSDVYVIG_ 0 0 0 REV__L1MC3_dup8251|chr10:68973955-68974384:+|3.3558958900605504|0.3809305600922875|3.14|151.0|15|3|sense REV__L1MC3_dup8251|chr10:68973955-68974384:+|3.3558958900605504|0.3809305600922875|3.14|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 550.7485961914062 2 550.260068 1098.50558 NaN NaN NaN NaN NaN NaN NaN 107.03 1 107.03 106.53 107.53 0 0 0 0 0.53105 1 26108 26108 1.8442 0.19162 1 + 8801 26785 5367 5372 10995 10995 -0.0397301190264443 FPCVCVLSY 9 Unmodified _FPCVCVLSY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.7406005859375 2 515.740457 1029.46636 0.23995 0.00012375 -1.2398 -0.00063943 -0.99989 -0.00051568 515.7397279586695 70.127 0.1935 73.499 73.347 73.541 3.3713 24 18 2 0 0 0 0.12799 2 17027 17021;17027 28.487 0 1 63977 8802 14697 5368 5373 10996;10997 10997 -0.0471943545785507 FPCVCVLSY 9 Unmodified _FPCVCVLSY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense MSMS UPN47_class_I_Rep_1 2 515.7391967773438 2 515.740457 1029.46636 NaN NaN NaN NaN NaN NaN NaN 70.255 1 73.626 73.126 74.126 3.3713 0 0 0 0.11494 1 17064 17064 21.747 0 1 8803 14697 5368 5373 10998 10998 -0.0471943545785507 FPCVCVLSY 9 Unmodified _FPCVCVLSY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.7401733398438 2 515.740457 1029.46636 0.05693 2.9361E-05 -1.2134 -0.00062578 -1.1564 -0.00059642 515.7398080236774 70.39 0.38669 73.673 73.553 73.94 3.2828 52 37 2 0 0 0 0.12799 1 17149 17149 28.487 0 1 102650 8804 14697 5368 5373 10999 10999 -0.0471943545785507 FPCVCVLSY 9 Unmodified _FPCVCVLSY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense MSMS UPN47_class_I_Rep_2 3 515.739013671875 2 515.740457 1029.46636 NaN NaN NaN NaN NaN NaN NaN 70.268 1 73.551 73.051 74.051 3.2828 0 0 0 0.19137 1 17112 17112 16.942 0 1 8805 14697 5368 5373 11000 11000 -0.0471943545785507 FPCVCVLSY 9 Unmodified _FPCVCVLSY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|195|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.242919921875 2 515.740457 1029.46636 0.28517 0.00014707 -1.0554 -0.00054434 -0.77028 -0.00039726 515.73974210836 70.48 0.606 73.691 73.372 73.978 3.2113 80 53 2 0 0 0 0.23311 1 17188 17188 18.135 0 1 121000 8806 14697 5368 5373 11001 11001 -0.0471943545785507 FPCYAGSFFAV 11 Unmodified _FPCYAGSFFAV_ 0 0 0 REV__L1MB5_dup2578|chr6:17642056-17643178:+|2.7488322273490167|0.1867923689481465|3.88|151.0|50|1|anti-sense REV__L1MB5_dup2578|chr6:17642056-17643178:+|2.7488322273490167|0.1867923689481465|3.88|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_3 4 604.7761840820312 2 604.775885 1207.53722 NaN NaN NaN NaN NaN NaN NaN 33.646 1 36.92 36.42 37.42 3.2748 0 0 0 0.38417 1 6022 6022 1.4819 0.68827 1 + 8807 26049 5369 5374 11002 11002 -0.058250191486877156 FPDCDSDEDE 10 Unmodified _FPDCDSDEDE_ 0 0 0 nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4;ENST00000426861.5_1_17:56598198-56599363:-|nuORF nc|ENSG00000108387|O43236-5|SEPTIN4 nc|ENSG00000108387|O43236-5|SEPTIN4 MSMS UPN48_class_I_Rep_2 6 585.7200927734375 2 586.190233 1170.36591 NaN NaN NaN NaN NaN NaN NaN 112.64 1 116.31 115.81 116.81 3.6648 0 0 0 0.53105 1 26849 26849 0.40072 0 1 8808 1862 5370 5375 11003 11003 -0.21245465768515714 FPEFEWWPA 9 Unmodified _FPEFEWWPA_ 0 0 0 L1PA5_dup9555|chr14:35174752-35180242:-|1.4998598223116069|0.038660395909299|5.28|151.0|213|1|anti-sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|85|1|anti-sense L1PA5_dup9555|chr14:35174752-35180242:-|1.4998598223116069|0.038660395909299|5.28|151.0|213|1|anti-sense L1PA5_dup9555|chr14:35174752-35180242:-|1.4998598223116069|0.038660395909299|5.28|151.0|213|1|anti-sense MSMS UPN47_class_I_Rep_2 3 604.77294921875 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 17.116 1 20.503 20.003 21.003 3.387 0 0 0 0.40038 1 1218 1218 0.6015 0 1 8809 14393 5371 5376 11004 11004 -0.061619459310350067 FPELPHYI 8 Unmodified _FPELPHYI_ 0 0 0 L1M4_dup5991|chr5:139356909-139357551:-|1.291493543897876|0.0266071947731574|5.6|151.0|18|2|sense L1M4_dup5991|chr5:139356909-139357551:-|1.291493543897876|0.0266071947731574|5.6|151.0|18|2|sense L1M4_dup5991|chr5:139356909-139357551:-|1.291493543897876|0.0266071947731574|5.6|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 508.2652587890625 2 508.26601 1014.51747 NaN NaN NaN NaN NaN NaN NaN 62.273 1 65.641 65.141 66.141 3.3681 0 0 0 0.38547 1 14659 14659 13.508 0 1 8810 8896 5372 5377 11005 11005 0.010789729028374495 FPESRIKQF 9 Unmodified _FPESRIKQF_ 0 0 0 REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 576.3137817382812 2 576.314023 1150.61349 -0.0078754 -4.5387E-06 0.11219 6.4658E-05 0.10432 6.0119E-05 576.3139502615041 41.784 1.1066 45.463 45.015 46.122 3.6792 134 78 2 0 0 0 0.24936 1 8445 8445 17.113 0 1 169550 + 8811 22807 5373 5378 11006 11006 0.044211207429498245 FPESRIKQF 9 Unmodified _FPESRIKQF_ 0 0 0 REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 576.314023 1150.61349 -0.0078754 -4.5387E-06 0.11219 6.4658E-05 0.10432 6.0119E-05 576.3139502615041 41.784 1.1066 45.463 45.015 46.122 3.6792 -0.091039 6.886E-05 NaN 17.113 134 78 2 NaN NaN NaN NaN 0 NaN NaN 0 169550 + 8812 22807 5373 5378 0.044211207429498245 FPESRIKQF 9 Unmodified _FPESRIKQF_ 0 0 0 REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 576.314023 1150.61349 0.079748 4.596E-05 0.035798 2.0631E-05 0.11555 6.6591E-05 576.3139536598424 42.255 0.98591 45.616 45.172 46.158 3.3611 0.062292 -1.9195E-05 NaN 17.113 124 71 2 NaN NaN NaN NaN 0 NaN NaN 0 109150 + 8813 22807 5373 5378 0.044211207429498245 FPESRIKQF 9 Unmodified _FPESRIKQF_ 0 0 0 REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 576.314023 1150.61349 0.084666 4.8794E-05 -0.061015 -3.5164E-05 0.023651 1.363E-05 576.3139092174739 42.343 1.0019 45.583 45.236 46.237 3.2394 0.028746 -0.00013078 NaN 17.113 113 70 2 NaN NaN NaN NaN 0 NaN NaN 0 110790 + 8814 22807 5373 5378 0.044211207429498245 FPEWFVNL 8 Unmodified _FPEWFVNL_ 0 0 0 ENST00000563332.6_1_16:4561236-4561575:-|nuORF ENST00000563332.6_1_16:4561236-4561575:-|nuORF ENST00000563332.6_1_16:4561236-4561575:-|nuORF MSMS UPN47_class_I_Rep_1 2 526.2680053710938 2 526.26601 1050.51747 NaN NaN NaN NaN NaN NaN NaN 83.823 1 87.388 86.888 87.888 3.5655 0 0 0 0.388 1 20970 20970 12.532 0.89125 1 8815 7472 5374 5379 11007 11007 -0.005770270971424907 FPFCIHFRM 9 Unmodified _FPFCIHFRM_ 0 0 0 L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|102|3|anti-sense L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|102|3|anti-sense L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|102|3|anti-sense MSMS UPN48_class_I_Rep_2 6 599.2876586914062 2 599.28844 1196.56233 NaN NaN NaN NaN NaN NaN NaN 30.359 1 33.994 33.494 34.494 3.6351 0 0 0 0.4007 1 4432 4432 0.52476 0 1 8816 12311 5375 5380 11008 11008 -0.028092428271065728 FPFCYGFDSS 10 Unmodified _FPFCYGFDSS_ 0 0 0 REV__L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|89|2|anti-sense REV__L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|89|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 586.1878662109375 2 585.23405 1168.45355 0.11842 6.9306E-05 -0.54927 -0.00032145 -0.43084 -0.00025214 585.2336364979952 23.285 0.56459 23.285 23.005 23.57 0 69 49 2 0 0 0 0.56478 1 2866 2866 0.45834 0.45834 1 85989 + 8817 29201 5376 5381 11009 11009 -0.12394175316399014 FPFDFGRN 8 Unmodified _FPFDFGRN_ 0 0 0 nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-SECPEP UPN48_class_I_Rep_1 5 499.75152587890625 2 500.237784 998.461016 0.23903 0.00011957 3.6264 0.0018141 3.8654 0.0019336 500.7385091164173 69.282 0.036514 72.736 72.709 72.746 3.4548 4 2 2 0 0 0 0.72333 1 16055 16055 4.3292 1.44 1 21577 8818 4289 5377 5382 11010 11010 -0.03827654933809299 FPFFCRVWV 9 Unmodified _FPFFCRVWV_ 0 0 0 L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|179|1|anti-sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|179|1|anti-sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|179|1|anti-sense MSMS UPN48_class_I_Rep_1 5 600.80517578125 2 600.80478 1199.59501 NaN NaN NaN NaN NaN NaN NaN 66.908 1 70.36 69.86 70.86 3.4516 0 0 0 0.39518 1 15335 15335 1.8442 0 1 8819 15126 5378 5383 11011 11011 0.0031928756739034725 FPFFFFEM 8 Unmodified _FPFFFFEM_ 0 0 0 AluSz_dup70536|chr12:123417017-123417323:+|1.0613918632094734|0.2034397300605973|2.38|151.0|20|2|anti-sense AluSz_dup70536|chr12:123417017-123417323:+|1.0613918632094734|0.2034397300605973|2.38|151.0|20|2|anti-sense AluSz_dup70536|chr12:123417017-123417323:+|1.0613918632094734|0.2034397300605973|2.38|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2523193359375 2 556.251514 1110.48848 NaN NaN NaN NaN NaN NaN NaN 94.065 1 97.801 97.301 98.301 3.736 0 0 0 0.40738 1 23381 23381 0.79363 0 1 8820 361 5379 5384 11012 11012 -0.062348877177782924 FPFFFFEM 8 Unmodified _FPFFFFEM_ 0 0 0 AluSz_dup70536|chr12:123417017-123417323:+|1.0613918632094734|0.2034397300605973|2.38|151.0|20|2|anti-sense AluSz_dup70536|chr12:123417017-123417323:+|1.0613918632094734|0.2034397300605973|2.38|151.0|20|2|anti-sense AluSz_dup70536|chr12:123417017-123417323:+|1.0613918632094734|0.2034397300605973|2.38|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_3 7 556.2518310546875 2 556.251514 1110.48848 NaN NaN NaN NaN NaN NaN NaN 93.789 1 97.68 97.18 98.18 3.8914 0 0 0 0.40738 1 22234 22234 0.79363 0 1 8821 361 5379 5384 11013 11013 -0.062348877177782924 FPFFHNDH 8 Unmodified _FPFFHNDH_ 0 0 0 REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense MSMS UPN46_class_I_Rep_3 1 530.7348022460938 2 530.735409 1059.45626 NaN NaN NaN NaN NaN NaN NaN 118.98 1 118.98 118.48 119.48 0 0 0 0 0.40738 1 29554 29554 0.79363 0 1 + 8822 25325 5380 5385 11014 11014 -0.07108539076557463 FPFFHNDH 8 Unmodified _FPFFHNDH_ 0 0 0 REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7360229492188 2 530.735409 1059.45626 NaN NaN NaN NaN NaN NaN NaN 19.387 1 22.739 22.239 23.239 3.3514 0 0 0 0.40738 1 1802 1802 0.79363 0 1 + 8823 25325 5380 5385 11015 11015 -0.07108539076557463 FPFFHNDH 8 Unmodified _FPFFHNDH_ 0 0 0 REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7357788085938 2 530.735409 1059.45626 NaN NaN NaN NaN NaN NaN NaN 23.746 1 27.515 27.015 28.015 3.769 0 0 0 0.40738 1 2652 2652 0.79363 0 1 + 8824 25325 5380 5385 11016 11016 -0.07108539076557463 FPFFHNDH 8 Unmodified _FPFFHNDH_ 0 0 0 REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|151|3|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7348022460938 2 530.735409 1059.45626 NaN NaN NaN NaN NaN NaN NaN 25.565 1 29.334 28.834 29.834 3.769 0 0 0 0.40738 1 3128 3128 0.79363 0 1 + 8825 25325 5380 5385 11017 11017 -0.07108539076557463 FPFHSSFLES 10 Unmodified _FPFHSSFLES_ 0 0 0 ENST00000275767.3_1_7:134832829-134849312:+|nuORF ENST00000275767.3_1_7:134832829-134849312:+|nuORF ENST00000275767.3_1_7:134832829-134849312:+|nuORF MSMS UPN47_class_I_Rep_2 3 599.2843627929688 2 599.282389 1196.55022 NaN NaN NaN NaN NaN NaN NaN 35.7 1 39.112 38.612 39.612 3.4114 0 0 0 0.53105 1 6612 6612 1.6526 0.17072 1 8826 6023 5381 5386 11018 11018 -0.040188647649301856 FPFHTTCMVH 10 Unmodified _FPFHTTCMVH_ 0 0 0 REV__ENST00000473202.1_1_2:224840586-224842399:-|nuORF REV__ENST00000473202.1_1_2:224840586-224842399:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 407.18402099609375 3 407.184416 1218.53142 -1.3926 -0.00056704 0.12039 4.9023E-05 -1.2722 -0.00051802 407.18460304430977 23.96 1.2325 27.311 26.82 28.053 3.3509 224 100 3 0 0 0 0.56273 1 3044 3044 1.9064 0.1641 1 256120 + 8827 22512 5382 5387 11019 11019 -0.06910440932028905 FPFIEHLE 8 Unmodified _FPFIEHLE_ 0 0 0 Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|70|2|anti-sense Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|70|2|anti-sense Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|70|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.2632446289062 2 516.263468 1030.51238 NaN NaN NaN NaN NaN NaN NaN 38.129 1 41.371 40.871 41.871 3.2414 0 0 0 0.40604 1 7388 7388 2.5775 0 1 8828 33188 5383 5388 11020 11020 -0.0016533095977138146 FPFIVTTNQ 9 Unmodified _FPFIVTTNQ_ 0 0 0 REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF MSMS UPN46_class_I_Rep_3 1 533.7804565429688 2 533.782025 1065.5495 NaN NaN NaN NaN NaN NaN NaN 111.61 1 111.61 111.11 112.11 0 0 0 0 0.39428 1 27526 27526 2.0598 0.21551 1 + 8829 18195 5384 5389 11021 11021 0.019343405859899576 FPFLLWHTC 9 Unmodified _FPFLLWHTC_ 0 0 0 REV__MSTB1_dup2998|chr10:87314534-87314957:+|2.30641277041757|0.2411938674345148|3.26|151.0|3|1|sense REV__MSTB1_dup2998|chr10:87314534-87314957:+|2.30641277041757|0.2411938674345148|3.26|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 582.3021240234375 2 582.288963 1162.56337 NaN NaN NaN NaN NaN NaN NaN 60.207 1 63.372 62.872 63.872 3.1651 0 0 0 0.39326 1 14122 14122 2.3027 0.24298 1 + 8830 31901 5385 5390 11022 11022 -0.011407051865489848 FPFLYDFFSS 10 Unmodified _FPFLYDFFSS_ 0 0 0 REV__MER4B-int_dup842|chrX:131693218-131695227:-|1.5862974358453727|0.0727136878688673|4.45|151.0|141|2|anti-sense REV__MER4B-int_dup842|chrX:131693218-131695227:-|1.5862974358453727|0.0727136878688673|4.45|151.0|141|2|anti-sense MSMS UPN46_class_I_Rep_3 1 635.2953491210938 2 635.294965 1268.57538 NaN NaN NaN NaN NaN NaN NaN 65.522 1 65.522 65.022 66.022 0 0 0 0 0.53105 1 14814 14814 1.6526 0 1 + 8831 31357 5386 5391 11023 11023 -0.048168099624035676 FPFMNVCC 8 Unmodified _FPFMNVCC_ 0 0 0 REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|80|2|anti-sense REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|80|2|anti-sense MSMS UPN46_class_I_Rep_3 1 480.6727600097656 2 480.692452 959.370351 NaN NaN NaN NaN NaN NaN NaN 36.322 1 36.322 35.822 36.822 0 0 0 0 0.40738 1 6720 6720 0.79363 0 1 + 8832 26183 5387 5392 11024 11024 -0.11095906569607905 FPFPHLLL 8 Unmodified _FPFPHLLL_ 0 0 0 L1MC1_dup3583|chr4:105174416-105176124:+|3.215223292510355|0.0876515971560796|5.2|151.0|44|3|sense L1MC1_dup3583|chr4:105174416-105176124:+|3.215223292510355|0.0876515971560796|5.2|151.0|44|3|sense L1MC1_dup3583|chr4:105174416-105176124:+|3.215223292510355|0.0876515971560796|5.2|151.0|44|3|sense MSMS UPN47_class_I_Rep_3 4 492.7713928222656 2 492.289288 982.564024 NaN NaN NaN NaN NaN NaN NaN 71.508 1 74.727 74.227 75.227 3.2188 0 0 0 0.4032 1 17549 17549 6.3541 0 1 8833 11130 5388 5393 11025 11025 0.07204457524801455 FPFTREEAL 9 Unmodified _FPFTREEAL_ 0 0 0 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 555.285400390625 2 555.284931 1108.55531 0.51797 0.00028762 -0.72573 -0.00040299 -0.20776 -0.00011537 555.2846129784049 55.528 0.48257 58.838 58.569 59.051 3.3102 39 27 2 0 0 0 0.41587 1 12648 12648 7.1017 0.90987 1 66950 8834 2567 5389 5394 11026 11026 0.005374390976612631 FPFVLVLWKL 10 Unmodified _FPFVLVLWKL_ 0 0 0 REV__L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|281|2|anti-sense REV__L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|281|2|anti-sense MSMS UPN47_class_I_Rep_2 3 631.4012451171875 2 631.389003 1260.76345 NaN NaN NaN NaN NaN NaN NaN 86.6 1 90.041 89.541 90.541 3.4407 0 0 0 0.53105 1 21541 21541 1.6526 0.45928 1 + 8835 29970 5390 5395 11027 11027 0.14350092752692944 FPGHTLIAVA 10 Unmodified _FPGHTLIAVA_ 0 0 0 nc|ENSG00000133962|Q9H7T0-2|CATSPERB;ENSG00000133962|ENST00000256343|CATSPERB nc|ENSG00000133962|Q9H7T0-2|CATSPERB nc|ENSG00000133962|Q9H7T0-2|CATSPERB MSMS UPN48_class_I_Rep_1 5 513.28955078125 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 30.748 1 34.29 33.79 34.79 3.542 0 0 0 0.53105 1 4457 4457 6.7232 0.51738 1 8836 2825 5391 5396 11028 11028 0.05926350685513171 FPGNPGMKGEA 11 Unmodified _FPGNPGMKGEA_ 0 0 0 ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 MSMS UPN48_class_I_Rep_3 7 552.76171875 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 41.921 1 45.567 45.067 46.067 3.6458 0 0 0 0.38417 1 7627 7627 2.4985 0.19575 1 8837 5509 5392 5397 11029 11029 -0.04063377813849911 FPGPSSWVTF 10 Unmodified _FPGPSSWVTF_ 0 0 0 L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|5|1|sense L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|5|1|sense L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.7742919921875 2 562.7742 1123.53385 0.48339 0.00027204 -0.44639 -0.00025122 0.036992 2.0818E-05 563.2754741402032 71.423 0.074196 74.889 74.858 74.932 3.466 6 5 2 0 0 0 0.30285 1 16697 16697 32.305 1.6689 1 154000 8838 9453 5393 5398 11030 11030 -0.022979459310590755 FPGRLHKL 8 Unmodified _FPGRLHKL_ 0 0 0 L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 484.2958068847656 2 484.295436 966.57632 NaN NaN NaN NaN NaN NaN NaN 31.673 1 35.314 34.814 35.814 3.641 0 0 0 0.40604 1 4796 4796 2.5775 0 1 8839 13128 5394 5399 11031 11031 0.09169493987826627 FPGRLHKL 8 Unmodified _FPGRLHKL_ 0 0 0 L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense MSMS UPN48_class_I_Rep_3 7 484.294921875 2 484.295436 966.57632 NaN NaN NaN NaN NaN NaN NaN 31.786 1 35.487 34.987 35.987 3.7015 0 0 0 0.40746 1 4749 4749 0.69038 0 1 8840 13128 5394 5399 11032 11032 0.09169493987826627 FPGRLHKL 8 Unmodified _FPGRLHKL_ 0 0 0 L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense L1MEc_dup6851|chr6:35876680-35877560:+|1.6581254107060817|0.041960856177121|5.3|150.0|25|3|sense MSMS UPN48_class_I_Rep_3 7 484.2947082519531 2 484.295436 966.57632 NaN NaN NaN NaN NaN NaN NaN 32.198 1 35.899 35.399 36.399 3.7015 0 0 0 0.40746 1 4863 4863 0.69038 0 1 8841 13128 5394 5399 11033 11033 0.09169493987826627 FPGRSHLQYY 10 Unmodified _FPGRSHLQYY_ 0 0 0 L1MB8_dup2432|chr3:138673723-138674773:+|2.134638593678748|0.0354414764651927|5.91|151.0|4|1|sense L1MB8_dup2432|chr3:138673723-138674773:+|2.134638593678748|0.0354414764651927|5.91|151.0|4|1|sense L1MB8_dup2432|chr3:138673723-138674773:+|2.134638593678748|0.0354414764651927|5.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 634.8125610351562 2 634.314554 1266.61456 0.4178 0.00026502 -3.8305 -0.0024298 -3.4127 -0.0021647 634.8130986731763 44.434 0.16998 48.196 48.101 48.271 3.7617 12 10 2 0 0 0 0.56033 1 8467 8467 3.5965 0.8613 1 167630 8842 10978 5395 5400 11034 11034 -0.00808664888131716 FPGVFSISR 9 Unmodified _FPGVFSISR_ 0 0 0 REV__L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|209|1|anti-sense REV__L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|209|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 505.27691650390625 2 505.276909 1008.53927 0.34619 0.00017492 -0.14541 -7.3474E-05 0.20078 0.00010145 505.27683392637925 62.968 1.2462 66.43 65.969 67.215 3.4625 272 93 4 0 0 0 0.31407 1 14264 14264 13.042 1.5478 1 3307900 + 8843 29492 5396 5401 11035 11035 0.035337776514325014 FPHNPQFIGR 10 Unmodified _FPHNPQFIGR_ 0 0 0 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 MSMS UPN48_class_I_Rep_2 6 404.87994384765625 3 404.880602 1211.61998 NaN NaN NaN NaN NaN NaN NaN 39.718 1 43.452 42.952 43.952 3.734 0 0 0 0.53105 1 7076 7076 3.5871 0 1 8844 2211 5397 5402 11036 11036 0.022630586943023445 FPHPIRVRW 9 Unmodified _FPHPIRVRW_ 0 0 0 REV__HERVH-int_dup1017|chr3:32463747-32466507:-|3.5426943458411784|0.1287088694004592|4.78|151.0|4|1|sense REV__HERVH-int_dup1017|chr3:32463747-32466507:-|3.5426943458411784|0.1287088694004592|4.78|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 604.2469482421875 2 604.345992 1206.67743 NaN NaN NaN NaN NaN NaN NaN 71.309 1 74.599 74.099 75.099 3.2899 0 0 0 0.39518 1 17420 17420 1.8442 0.6509 1 + 8845 23651 5398 5403 11037 11037 0.08235945690580593 FPHPLWPV 8 Unmodified _FPHPLWPV_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|94|1|anti-sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|94|1|anti-sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|94|1|anti-sense MSMS UPN48_class_I_Rep_3 7 497.25384521484375 2 496.771263 991.527973 NaN NaN NaN NaN NaN NaN NaN 37.49 1 41.153 40.653 41.653 3.663 0 0 0 0.40738 1 6326 6326 0.79363 0 1 8846 11288 5399 5404 11038 11038 0.031870003479411935 FPIRRHKRR 9 Unmodified _FPIRRHKRR_ 0 0 0 REV__L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|40|3|sense REV__L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|40|3|sense MSMS UPN48_class_I_Rep_2 6 633.39697265625 2 633.394339 1264.77413 NaN NaN NaN NaN NaN NaN NaN 65.322 1 68.802 68.302 69.302 3.4792 0 0 0 0.4007 1 14840 14840 0.52476 0 1 + 8847 28452 5400 5405 11039 11039 0.1523293297032069 FPIWPPPF 8 Unmodified _FPIWPPPF_ 0 0 0 REV__L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|76|2|anti-sense REV__L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|76|2|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7792053222656 2 500.768189 999.521825 NaN NaN NaN NaN NaN NaN NaN 31.229 1 34.763 34.263 35.263 3.5342 0 0 0 0.40581 1 4593 4593 2.8892 0.31174 1 + 8848 28366 5401 5406 11040 11040 0.02204482116417239 FPKCSNYFT 9 Unmodified _FPKCSNYFT_ 0 0 0 L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|83|1|anti-sense L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|83|1|anti-sense L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|83|1|anti-sense MSMS UPN48_class_I_Rep_3 7 554.175537109375 2 553.75241 1105.49027 NaN NaN NaN NaN NaN NaN NaN 28.284 1 32.026 31.526 32.526 3.7424 0 0 0 0.39518 1 3828 3828 1.8442 0.19162 1 8849 12428 5402 5407 11041 11041 -0.058258786998294454 FPKEIQML 8 Oxidation (M) _FPKEIQM(Oxidation (M))L_ FPKEIQM(1)L FPKEIQM(42)L 0 0 1 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MULTI-MSMS UPN47_class_I_Rep_3 4 511.27294921875 2 511.272978 1020.5314 0.23731 0.00012133 0.53994 0.00027606 0.77725 0.00039739 511.2726295810757 48.535 1.4947 51.77 51.367 52.862 3.2345 208 82 5 0 0 0 0.82752 1 10584 10584 41.84 16.44 1 444050 8850 1027 5403 5408 11042 11042 24 0.02195882339651689 FPKKERKLR 9 Unmodified _FPKKERKLR_ 0 0 0 REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF MSMS UPN47_class_I_Rep_2 3 601.3805541992188 2 601.380032 1200.74551 NaN NaN NaN NaN NaN NaN NaN 93.949 1 97.421 96.921 97.921 3.472 0 0 0 0.39518 1 23172 23172 1.8442 1.3195 1 + 8851 20376 5404 5409 11043 11043 0.1531677055054388 FPLAPVLW 8 Unmodified _FPLAPVLW_ 0 0 0 REV__L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|218|3|anti-sense REV__L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|218|3|anti-sense MSMS UPN46_class_I_Rep_3 1 471.7767639160156 2 471.776014 941.537475 NaN NaN NaN NaN NaN NaN NaN 58.73 1 58.73 58.23 59.23 0 0 0 0 0.40581 1 12942 12942 2.8892 2.0956 1 + 8852 28887 5405 5410 11044 11044 0.06436768633477641 FPLAYFPLF 9 Unmodified _FPLAYFPLF_ 0 0 0 REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9 REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9 MSMS UPN48_class_I_Rep_2 6 557.801513671875 2 557.802229 1113.5899 NaN NaN NaN NaN NaN NaN NaN 70.705 1 74.24 73.74 74.74 3.5359 0 0 0 0.22893 1 16460 16460 14.582 0 1 + 8853 19162 5406 5411 11045 11045 0.037653069764019165 FPLEPTLFY 9 Unmodified _FPLEPTLFY_ 0 0 0 REV__L1M4b_dup4209|chr20:13372620-13374349:-|1.0478909854945109|0.1326846554390142|2.98|151.0|94|2|anti-sense REV__L1M4b_dup4209|chr20:13372620-13374349:-|1.0478909854945109|0.1326846554390142|2.98|151.0|94|2|anti-sense MSMS UPN47_class_I_Rep_3 4 563.7781982421875 2 563.794601 1125.57465 NaN NaN NaN NaN NaN NaN NaN 74.881 1 78.128 77.628 78.628 3.2464 0 0 0 0.36505 1 18552 18552 7.2892 1.5574 1 + 8854 24561 5407 5412 11046 11046 0.016883953885553638 FPLFLVWLE 9 Unmodified _FPLFLVWLE_ 0 0 0 L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|166|2|anti-sense L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|166|2|anti-sense L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|166|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 582.3282470703125 2 582.328611 1162.64267 0.37684 0.00021944 -0.19367 -0.00011278 0.18317 0.00010667 582.3283737571693 60.75 0.23904 63.915 63.741 63.98 3.1651 38 23 2 0 0 0 0.45688 1 14280 14280 4.756 0.42677 1 224410 8855 9417 5408 5413 11047 11047 0.06785265039229671 FPLHQHPHP 9 Unmodified _FPLHQHPHP_ 0 0 0 REV__L1MA5_dup1621|chr6:15578776-15579523:+|1.2349841892213815|0.0077597612857832|7.31|151.0|49|3|anti-sense REV__L1MA5_dup1621|chr6:15578776-15579523:+|1.2349841892213815|0.0077597612857832|7.31|151.0|49|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 555.28515625 2 555.2856 1108.55665 0.41275 0.00022919 -1.8926 -0.0010509 -1.4798 -0.00082172 555.2845173705332 55.689 0.406 58.867 58.719 59.125 3.1779 38 26 2 0 0 0 0.46869 1 12749 12749 3.9444 0.94915 1 60049 + 8856 25360 5409 5414 11048 11048 0.006711179770945819 FPLHQHPHP 9 Unmodified _FPLHQHPHP_ 0 0 0 REV__L1MA5_dup1621|chr6:15578776-15579523:+|1.2349841892213815|0.0077597612857832|7.31|151.0|49|3|anti-sense REV__L1MA5_dup1621|chr6:15578776-15579523:+|1.2349841892213815|0.0077597612857832|7.31|151.0|49|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 555.2856 1108.55665 0.37175 0.00020643 -1.3977 -0.00077612 -1.0259 -0.00056969 555.7862829946511 55.725 0.07193 59.204 59.14 59.212 3.4785 0.23439 0.00054539 NaN 3.9444 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 30372 + 8857 25360 5409 5414 0.006711179770945819 FPLHWWHPF 9 Unmodified _FPLHWWHPF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MSMS UPN48_class_I_Rep_1 5 633.8129272460938 2 633.813993 1265.61343 NaN NaN NaN NaN NaN NaN NaN 62.298 1 65.76 65.26 66.26 3.4625 0 0 0 0.39326 1 13930 13930 2.3027 0.4585 1 + 8858 19304 5410 5415 11049 11049 -0.008748344664127217 FPLLKPLKIII 11 Unmodified _FPLLKPLKIII_ 0 0 0 MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 432.3006896972656 3 432.300215 1293.87882 NaN NaN NaN NaN NaN NaN NaN 108.12 1 111.65 111.15 112.15 3.5382 0 0 0 0.38417 1 26432 26432 0.45452 0.35968 1 8859 16117 5411 5416 11050 11050 0.24363196883700766 FPLLKPLKIII 11 Unmodified _FPLLKPLKIII_ 0 0 0 MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 432.3006591796875 3 432.300215 1293.87882 NaN NaN NaN NaN NaN NaN NaN 108.24 1 111.78 111.28 112.28 3.5382 0 0 0 0.38417 1 26472 26472 0.45452 0.35968 1 8860 16117 5411 5416 11051 11051 0.24363196883700766 FPLLKPLKIII 11 Unmodified _FPLLKPLKIII_ 0 0 0 MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 432.30047607421875 3 432.300215 1293.87882 NaN NaN NaN NaN NaN NaN NaN 108.71 1 112.25 111.75 112.75 3.5382 0 0 0 0.38417 1 26637 26637 0.45452 0 1 8861 16117 5411 5416 11052 11052 0.24363196883700766 FPLLKPLKIII 11 Unmodified _FPLLKPLKIII_ 0 0 0 MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 432.30035400390625 3 432.300215 1293.87882 NaN NaN NaN NaN NaN NaN NaN 108.84 1 112.38 111.88 112.88 3.5382 0 0 0 0.38417 1 26690 26690 0.45452 0 1 8862 16117 5411 5416 11053 11053 0.24363196883700766 FPLLKPLKIII 11 Unmodified _FPLLKPLKIII_ 0 0 0 MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MSMS UPN48_class_I_Rep_3 7 432.30029296875 3 432.300215 1293.87882 NaN NaN NaN NaN NaN NaN NaN 108.75 1 112.42 111.92 112.92 3.6751 0 0 0 0.38417 1 25771 25771 0.45452 0 1 8863 16117 5411 5416 11054 11054 0.24363196883700766 FPLPSPTWA 9 Unmodified _FPLPSPTWA_ 0 0 0 MLT1H_dup9|chr1:1873200-1873587:+|2.671414514351296|0.0119280688254299|7.81|151.0|25|2|anti-sense MLT1H_dup9|chr1:1873200-1873587:+|2.671414514351296|0.0119280688254299|7.81|151.0|25|2|anti-sense MLT1H_dup9|chr1:1873200-1873587:+|2.671414514351296|0.0119280688254299|7.81|151.0|25|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 508.2657775878906 2 508.26601 1014.51747 0.15229 7.7402E-05 -0.1191 -6.0535E-05 0.033184 1.6866E-05 508.2658048887357 62.185 0.94463 65.444 65.079 66.024 3.2594 100 63 2 0 0 0 0.33654 1 14703 14703 11.64 1.4569 1 110320 8864 16429 5412 5417 11055 11055 0.010789729028488182 FPLPSPTWA 9 Unmodified _FPLPSPTWA_ 0 0 0 MLT1H_dup9|chr1:1873200-1873587:+|2.671414514351296|0.0119280688254299|7.81|151.0|25|2|anti-sense MLT1H_dup9|chr1:1873200-1873587:+|2.671414514351296|0.0119280688254299|7.81|151.0|25|2|anti-sense MLT1H_dup9|chr1:1873200-1873587:+|2.671414514351296|0.0119280688254299|7.81|151.0|25|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 508.26601 1014.51747 0.23067 0.00011724 -0.75657 -0.00038454 -0.5259 -0.0002673 508.2656471311033 62.428 0.16656 65.796 65.733 65.9 3.3681 0.17584 -0.00054819 NaN 11.64 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 64803 8865 16429 5412 5417 0.010789729028488182 FPLQRSVSF 9 Unmodified _FPLQRSVSF_ 0 0 0 nc|ENSG00000293488|Q8IZS7|CLECL1P nc|ENSG00000293488|Q8IZS7|CLECL1P nc|ENSG00000293488|Q8IZS7|CLECL1P MULTI-MSMS UPN47_class_I_Rep_2 3 540.7955322265625 2 540.795466 1079.57638 0.47607 0.00025746 0.45213 0.00024451 0.9282 0.00050197 541.2973117115737 56.338 0.90451 59.639 59.237 60.142 3.3009 173 58 4 0 0 0 0.24411 1 12826 12826 17.443 4.57 1 463700 8866 16863 5413 5418 11056 11056 0.03977449197191163 FPLQRSVSF 9 Unmodified _FPLQRSVSF_ 0 0 0 nc|ENSG00000293488|Q8IZS7|CLECL1P nc|ENSG00000293488|Q8IZS7|CLECL1P nc|ENSG00000293488|Q8IZS7|CLECL1P MULTI-SECPEP UPN47_class_I_Rep_3 4 541.2622680664062 2 540.795466 1079.57638 0.37596 0.00020332 0.67028 0.00036248 1.0462 0.0005658 541.2973734234163 56.529 0.81363 59.701 59.308 60.121 3.1721 138 54 4 0 0 0 0.095404 1 13080 13080 22.658 3.2961 1 426260 8867 16863 5413 5418 11057 11057 0.03977449197191163 FPLQVLGFE 9 Unmodified _FPLQVLGFE_ 0 0 0 nc|ENSG00000160209|O00764-2|PDXK;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-2|PDXK nc|ENSG00000160209|O00764-2|PDXK MSMS UPN47_class_I_Rep_3 4 525.3033447265625 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 57.882 1 61.05 60.55 61.55 3.1681 0 0 0 0.38639 1 13408 13408 3.9444 1.0552 1 8868 3861 5414 5419 11058 11058 0.03699528591369017 FPLWACKIK 9 Unmodified _FPLWACKIK_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|79|3|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|79|3|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_2 3 553.3154296875 2 553.31498 1104.61541 NaN NaN NaN NaN NaN NaN NaN 41.879 1 45.244 44.744 45.744 3.3655 0 0 0 0.39428 1 8483 8483 2.0598 0.21551 1 8869 16560 5415 5420 11059 11059 0.06728458227189549 FPMPGKHS 8 Unmodified _FPMPGKHS_ 0 0 0 REV__ENSG00000171388|ENST00000429967|APLN REV__ENSG00000171388|ENST00000429967|APLN MSMS UPN48_class_I_Rep_3 7 450.7233581542969 2 450.723455 899.432358 NaN NaN NaN NaN NaN NaN NaN 117.86 1 121.48 120.98 121.98 3.6124 0 0 0 0.40738 1 28033 28033 0.79363 0 1 + 8870 20403 5416 5421 11060 11060 -0.02138095834595788 FPPWLTLF 8 Unmodified _FPPWLTLF_ 0 0 0 REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|325|3|anti-sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|325|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7808837890625 2 510.781296 1019.54804 0.101 5.159E-05 -0.68547 -0.00035012 -0.58447 -0.00029853 510.7809028224961 49.469 0.6649 52.815 52.544 53.208 3.3465 72 43 2 0 0 0 0.82752 1 10872 10872 5.7604 0.52976 1 127560 + 8871 30418 5417 5422 11061 11061 0.039047512878937596 FPQGWGAGTGR 11 Unmodified _FPQGWGAGTGR_ 0 0 0 REV__ENST00000267938.8_1_15:76135656-76135731:+|nuORF REV__ENST00000267938.8_1_15:76135656-76135731:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 567.2770385742188 2 567.277972 1132.54139 0.33362 0.00018925 -0.86017 -0.00048796 -0.52656 -0.0002987 567.2774053342404 55.327 0.78472 58.806 58.284 59.069 3.4785 74 49 2 0 0 0 0.65821 1 12579 12579 2.4985 0.19575 1 133450 + 8872 21601 5418 5423 11062 11062 -0.019577936107680216 FPRFPGHQ 8 Unmodified _FPRFPGHQ_ 0 0 0 L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|57|2|sense L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|57|2|sense L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|57|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 493.7861633300781 2 493.253769 984.492984 0.16465 8.1215E-05 1.1657 0.00057497 1.3303 0.00065618 493.25562717658715 109.29 0.067574 112.92 112.88 112.94 3.6321 17 8 3 0 0 0 0.72333 1 26531 26531 4.756 0 1 484130 8873 14480 5419 5424 11063 11063 0.00011757539994050603 FPRRVKLPG 9 Unmodified _FPRRVKLPG_ 0 0 0 nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2 nc|ENSG00000118523|P29279-2|CCN2 nc|ENSG00000118523|P29279-2|CCN2 MULTI-MSMS UPN47_class_I_Rep_2 3 535.33544921875 2 535.335093 1068.65563 0.57107 0.00030571 0.61132 0.00032726 1.1824 0.00063297 535.3353992498614 109.32 0.49598 112.85 112.69 113.18 3.5307 160 66 3 0 0 0 0.41259 1 26644 26644 7.2892 7.2892 1 7157300 8874 2254 5420 5425 11064 11064 0.12405140941996251 FPRRVKLPG 9 Unmodified _FPRRVKLPG_ 0 0 0 nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2 nc|ENSG00000118523|P29279-2|CCN2 nc|ENSG00000118523|P29279-2|CCN2 MULTI-MSMS UPN48_class_I_Rep_1 5 535.3353271484375 2 535.335093 1068.65563 0.34215 0.00018316 0.31726 0.00016984 0.65941 0.00035301 535.3351622342724 108.76 0.54372 112.39 112.2 112.75 3.6321 235 63 5 0 0 0 0.41259 2 26346 26346;26444 7.2892 7.2892 1 105100000 8875 2254 5420 5425 11065;11066 11065 0.12405140941996251 FPRRVKLPG 9 Unmodified _FPRRVKLPG_ 0 0 0 nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2 nc|ENSG00000118523|P29279-2|CCN2 nc|ENSG00000118523|P29279-2|CCN2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 535.335093 1068.65563 0.44834 0.00024001 0.58636 0.0003139 1.0347 0.00055391 535.3353217659303 109.29 0.41502 112.96 112.81 113.23 3.6715 0.073709 1.6579E-05 NaN 7.2892 120 54 3 NaN NaN NaN NaN 0 NaN NaN 0 5839300 8876 2254 5420 5425 0.12405140941996251 FPSDTTLYNI 10 Unmodified _FPSDTTLYNI_ 0 0 0 L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|10|2|sense L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|10|2|sense L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 585.7877807617188 2 585.787504 1169.56045 0.48575 0.00028455 -0.54354 -0.0003184 -0.057782 -3.3848E-05 585.7872674087901 70.705 0.20058 70.705 70.535 70.735 0 28 20 2 0 0 0 0.52562 1 16240 16240 8.7454 0 1 101560 8877 8868 5421 5426 11067 11067 -0.017543018303967983 FPSDTTLYNI 10 Unmodified _FPSDTTLYNI_ 0 0 0 L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|10|2|sense L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|10|2|sense L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 585.7692260742188 2 585.787504 1169.56045 NaN NaN NaN NaN NaN NaN NaN 70.831 1 70.831 70.331 71.331 0 0 0 0 0.53105 1 16295 16295 15.248 1.3424 1 8878 8868 5421 5426 11068 11068 -0.017543018303967983 FPSFWSLYV 9 Unmodified _FPSFWSLYV_ 0 0 0 REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|251|2|anti-sense REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|251|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.2866821289062 2 573.286943 1144.55933 NaN NaN NaN NaN NaN NaN NaN 61.907 1 65.275 64.775 65.775 3.3681 0 0 0 0.36505 1 14548 14548 7.2892 0 1 + 8879 30390 5422 5427 11069 11069 -0.007164714086229651 FPSIPLITKLH 11 Unmodified _FPSIPLITKLH_ 0 0 0 REV__L1ME3A_dup12683|chr15:50577603-50578215:+|1.6468664392033836|0.1075058335205163|3.94|151.0|27|1|anti-sense REV__L1ME3A_dup12683|chr15:50577603-50578215:+|1.6468664392033836|0.1075058335205163|3.94|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 422.5924377441406 3 422.592058 1264.75434 NaN NaN NaN NaN NaN NaN NaN 60.624 1 64.103 63.603 64.603 3.4785 0 0 0 0.38417 1 13404 13404 2.6312 0.13275 1 + 8880 27989 5423 5428 11070 11070 0.13255699396381715 FPSLLRYRRRE 11 Unmodified _FPSLLRYRRRE_ 0 0 0 REV__L1MC4_dup5014|chr3:123512639-123513992:+|1.208675101078923|0.1005891082402498|3.59|151.0|43|3|sense REV__L1MC4_dup5014|chr3:123512639-123513992:+|1.208675101078923|0.1005891082402498|3.59|151.0|43|3|sense MSMS UPN47_class_I_Rep_1 2 498.2880859375 3 498.288031 1491.84226 NaN NaN NaN NaN NaN NaN NaN 12.761 1 16.211 15.711 16.711 3.45 0 0 0 0.38417 1 149 149 0.094841 0 1 + 8881 26921 5424 5429 11071 11071 0.11601713039658534 FPSLPRLVVPS 11 Unmodified _FPSLPRLVVPS_ 0 0 0 L1PA16_dup2969|chr3:187033761-187036897:+|3.862092476829461|0.3584050580650417|3.43|151.0|179|3|anti-sense L1PA16_dup2969|chr3:187033761-187036897:+|3.862092476829461|0.3584050580650417|3.43|151.0|179|3|anti-sense L1PA16_dup2969|chr3:187033761-187036897:+|3.862092476829461|0.3584050580650417|3.43|151.0|179|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3612060546875 2 606.360973 1210.70739 0.37633 0.00022819 0.49586 0.00030067 0.87219 0.00052886 606.3610652715412 31.386 0.11327 31.386 31.373 31.486 0 12 8 2 0 0 0 0.67519 1 5243 5243 0.96228 0.2719 1 569650 8882 14077 5425 5430 11072 11072 0.11046839845243994 FPSQSPGQNY 10 Unmodified _FPSQSPGQNY_ 0 0 0 REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|84|3|sense REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|84|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.7548217773438 2 562.753995 1123.49344 0.12092 6.8049E-05 0.10037 5.6484E-05 0.22129 0.00012453 562.7539712544618 45.723 0.76046 49.423 49.125 49.886 3.6999 95 44 3 0 0 0 0.40112 2 9664 9664;9708 19.362 2.4196 1 237270 + 8883 30404 5426 5431 11073;11074 11073 -0.06336912321467025 FPSSVASHL 9 Unmodified _FPSSVASHL_ 0 0 0 HERV17-int_dup555|chr9:35641385-35642827:-|1.0766333988326726|0.2284568824338885|2.24|151.0|62|2|anti-sense HERV17-int_dup555|chr9:35641385-35642827:-|1.0766333988326726|0.2284568824338885|2.24|151.0|62|2|anti-sense HERV17-int_dup555|chr9:35641385-35642827:-|1.0766333988326726|0.2284568824338885|2.24|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.7452392578125 2 472.745442 943.476331 -0.021672 -1.0245E-05 0.54585 0.00025805 0.52418 0.0002478 472.7453643108834 55.675 0.46025 58.852 58.623 59.083 3.1779 34 29 2 0 0 0 0.42249 1 12750 12750 6.7232 0 1 58502 8884 8020 5427 5432 11075 11075 0.0023321186339444466 FPSYHLITF 9 Unmodified _FPSYHLITF_ 0 0 0 REV__nc|ENSG00000184611|Q9NS40-2|KCNH7 REV__nc|ENSG00000184611|Q9NS40-2|KCNH7 MSMS UPN48_class_I_Rep_2 6 562.79248046875 2 562.792392 1123.57023 NaN NaN NaN NaN NaN NaN NaN 71.608 1 75.159 74.659 75.659 3.5505 0 0 0 0.38639 1 16719 16719 3.9444 0.3479 1 + 8885 20823 5428 5433 11076 11076 0.013389309656531623 FPTKVDIK 8 Unmodified _FPTKVDIK_ 0 0 0 REV__ENSG00000168938|ENST00000306442|PPIC REV__ENSG00000168938|ENST00000306442|PPIC MSMS UPN47_class_I_Rep_1 2 474.2822265625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.25 1 112.85 112.35 113.35 3.6046 0 0 0 0.40472 1 26930 26930 4.3292 0 1 + 8886 20289 5429 5434 11077 11077 0.07335545936950894 FPTPRNIWQ 9 Unmodified _FPTPRNIWQ_ 0 0 0 ENSG00000088854.12,C20orf194,chr20,-,I12.1,3326285,3330645|27|8.81|1|intron ENSG00000088854.12,C20orf194,chr20,-,I12.1,3326285,3330645|27|8.81|1|intron ENSG00000088854.12,C20orf194,chr20,-,I12.1,3326285,3330645|27|8.81|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 579.8071899414062 2 579.806365 1157.59818 0.42825 0.0002483 -0.078194 -4.5337E-05 0.35006 0.00020296 579.8062514111505 40.564 1.3246 44.068 43.628 44.953 3.5048 308 117 3 0 0 0 0.42249 1 7545 7545 6.7232 0.99131 1 1012200 8887 1319 5430 5435 11078 11078 0.025682539457420717 FPTPRNIWQ 9 Unmodified _FPTPRNIWQ_ 0 0 0 ENSG00000088854.12,C20orf194,chr20,-,I12.1,3326285,3330645|27|8.81|1|intron ENSG00000088854.12,C20orf194,chr20,-,I12.1,3326285,3330645|27|8.81|1|intron ENSG00000088854.12,C20orf194,chr20,-,I12.1,3326285,3330645|27|8.81|1|intron MSMS UPN48_class_I_Rep_3 7 579.8074340820312 2 579.806365 1157.59818 NaN NaN NaN NaN NaN NaN NaN 41.804 1 45.45 44.95 45.95 3.6458 0 0 0 0.38784 1 7593 7593 3.5965 0.60125 1 8888 1319 5430 5435 11079 11079 0.025682539457420717 FPVDMGHFVI 10 Unmodified _FPVDMGHFVI_ 0 0 0 REV__L1ME1_dup217|chr1:19464592-19465053:+|1.2297461316117857|0.019602188427821|5.97|151.0|31|3|anti-sense REV__L1ME1_dup217|chr1:19464592-19465053:+|1.2297461316117857|0.019602188427821|5.97|151.0|31|3|anti-sense MSMS UPN47_class_I_Rep_1 2 581.2916870117188 2 581.291702 1160.56885 NaN NaN NaN NaN NaN NaN NaN 29.718 1 33.476 32.976 33.976 3.7578 0 0 0 0.53105 1 4760 4760 1.8442 0.36234 1 + 8889 27672 5431 5436 11080 11080 -0.005010263947497151 FPVFEQLD 8 Unmodified _FPVFEQLD_ 0 0 0 REV__ENST00000426186.1_3_2:87098444-87121919:+|nuORF REV__ENST00000426186.1_3_2:87098444-87121919:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.74615478515625 2 497.74765 993.480748 -0.34127 -0.00016987 -1.0313 -0.00051331 -1.3725 -0.00068317 497.74692030552717 13.004 0.17824 16.461 16.375 16.553 3.457 22 14 2 0 0 0 0.82752 1 212 212 0.79363 0 1 70887 + 8890 22265 5432 5437 11081 11081 -0.016253237137220822 FPVFTKDK 8 Unmodified _FPVFTKDK_ 0 0 0 MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|22|1|anti-sense;PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|80|2|anti-sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|22|1|anti-sense MER41-int_dup1413|chr15:66465708-66466396:-|1.4860691482626072|0.1088383885181559|3.77|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_1 5 491.2522277832031 2 491.273835 980.533118 NaN NaN NaN NaN NaN NaN NaN 25.207 1 28.774 28.274 29.274 3.5667 0 0 0 0.40738 1 2899 2899 0.79363 0 1 8891 15958 5433 5438 11082 11082 0.04207259419899856 FPVGRVHRLLR 11 Unmodified _FPVGRVHRLLR_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN46_class_I_Rep_3 1 450.61395263671875 3 450.614079 1348.82041 0.14919 6.7227E-05 -0.57098 -0.00025729 -0.42179 -0.00019006 450.61381589975423 46.7 0.30337 46.7 46.488 46.792 0 45 29 2 0 0 0 0.29552 1 9617 9617 22.775 15.298 1 872690 8892 4893 5434 5439 11083 11083 0.15994953081781205 FPVGRVHRLLR 11 Unmodified _FPVGRVHRLLR_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN46_class_I_Rep_3 1 450.6139221191406 3 450.614079 1348.82041 0.14793 6.6661E-05 -0.49268 -0.00022201 -0.34475 -0.00015535 450.61382153089187 46.972 0.33614 46.972 46.759 47.095 0 55 31 3 0 0 0 0.2675 2 9660 9660;9698 18.721 11.646 1 381070 8893 4893 5434 5439 11084;11085 11084 0.15994953081781205 FPVGRVHRLLR 11 Unmodified _FPVGRVHRLLR_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN46_class_I_Rep_3 1 450.61370849609375 3 450.614079 1348.82041 0.14669 6.61E-05 -0.60972 -0.00027475 -0.46303 -0.00020865 450.613805137776 47.268 0.41472 47.268 47.053 47.467 0 86 42 3 0 0 0 0.32655 1 9734 9734 25.997 18.52 1 554560 8894 4893 5434 5439 11086 11086 0.15994953081781205 FPVGRVHRLLR 11 Unmodified _FPVGRVHRLLR_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN46_class_I_Rep_3 1 450.6138610839844 3 450.614079 1348.82041 0.14433 6.5035E-05 -0.47205 -0.00021271 -0.32773 -0.00014768 450.61385509086426 47.655 0.38955 47.655 47.467 47.857 0 60 41 2 0 0 0 0.42053 1 9837 9837 9.7643 5.0483 1 654710 8895 4893 5434 5439 11087 11087 0.15994953081781205 FPVGRVHRLLR 11 Unmodified _FPVGRVHRLLR_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MSMS UPN46_class_I_Rep_3 1 450.614013671875 3 450.614079 1348.82041 NaN NaN NaN NaN NaN NaN NaN 47.338 1 47.338 46.838 47.838 0 0 0 0 0.06763 1 9780 9780 25.997 16.233 1 8896 4893 5434 5439 11088 11088 0.15994953081781205 FPVMKHPE 8 Unmodified _FPVMKHPE_ 0 0 0 L1MB7_dup3558|chr2:233067081-233067890:-|4.847897525887928|0.0147683777748775|8.36|151.0|7|1|sense L1MB7_dup3558|chr2:233067081-233067890:-|4.847897525887928|0.0147683777748775|8.36|151.0|7|1|sense L1MB7_dup3558|chr2:233067081-233067890:-|4.847897525887928|0.0147683777748775|8.36|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 492.7664794921875 2 492.752213 983.489873 NaN NaN NaN NaN NaN NaN NaN 18.193 1 18.193 17.693 18.693 0 0 0 0 0.40738 1 1552 1552 0.79363 0 1 8897 10824 5435 5440 11089 11089 -0.0025325362902322013 FPVNLFEFF 9 Unmodified _FPVNLFEFF_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense;L1PA5_dup3498|chr5:32755806-32761521:-|1.3483755825166386|0.0281023035538484|5.58|138.0|319|3|anti-sense;L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|257|2|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense MSMS UPN48_class_I_Rep_1 5 580.2926635742188 2 580.294768 1158.57498 NaN NaN NaN NaN NaN NaN NaN 67.324 1 70.776 70.276 71.276 3.4516 0 0 0 0.38916 1 15464 15464 3.2813 0 1 8898 14458 5436 5441 11090 11090 0.002038151084434503 FPVNLFEFF 9 Unmodified _FPVNLFEFF_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense;L1PA5_dup3498|chr5:32755806-32761521:-|1.3483755825166386|0.0281023035538484|5.58|138.0|319|3|anti-sense;L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|257|2|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 579.80322265625 2 580.294768 1158.57498 0.54357 0.00031543 -3.797 -0.0022034 -3.2535 -0.001888 580.2938921376931 59.158 0.14545 62.639 62.543 62.689 3.4801 9 7 2 0 0 0 0.12207 1 12954 12954 5.7319 1.4026 1 57365 8899 14458 5436 5441 11091 11091 0.002038151084434503 FPVNLFEFF 9 Unmodified _FPVNLFEFF_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense;L1PA5_dup3498|chr5:32755806-32761521:-|1.3483755825166386|0.0281023035538484|5.58|138.0|319|3|anti-sense;L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|257|2|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|295|3|anti-sense MSMS UPN48_class_I_Rep_3 7 580.2933959960938 2 580.294768 1158.57498 NaN NaN NaN NaN NaN NaN NaN 58.8 1 62.323 61.823 62.823 3.5231 0 0 0 0.2408 1 12775 12775 13.906 0.86358 1 8900 14458 5436 5441 11092 11092 0.002038151084434503 FPVRRAAGR 9 Unmodified _FPVRRAAGR_ 0 0 0 REV__ENST00000505345.5_2_5:89770080-89781382:+|nuORF REV__ENST00000505345.5_2_5:89770080-89781382:+|nuORF MSMS UPN48_class_I_Rep_2 6 515.3057250976562 2 515.306867 1028.59918 NaN NaN NaN NaN NaN NaN NaN 87.578 1 91.306 90.806 91.806 3.7279 0 0 0 0.38639 1 20842 20842 3.9444 0.3479 1 + 8901 22712 5437 5442 11093 11093 0.08602513105302023 FPWDHNLY 8 Unmodified _FPWDHNLY_ 0 0 0 REV__ENSG00000147138|ENST00000645147|GPR174 REV__ENSG00000147138|ENST00000645147|GPR174 MSMS UPN48_class_I_Rep_2 6 546.2501831054688 2 546.250892 1090.48723 NaN NaN NaN NaN NaN NaN NaN 25.883 1 29.516 29.016 30.016 3.6332 0 0 0 0.40746 1 3214 3214 0.69038 0 1 + 8902 19560 5438 5443 11094 11094 -0.054393857623381336 FPWFHHFHI 9 Unmodified _FPWFHHFHI_ 0 0 0 ENST00000488423.1_1_3:16301924-16302065:-|nuORF ENST00000488423.1_1_3:16301924-16302065:-|nuORF ENST00000488423.1_1_3:16301924-16302065:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 633.812255859375 2 634.311618 1266.60868 0.4178 0.00026502 0.79908 0.00050687 1.2169 0.00077188 634.8130986731763 44.434 0.16998 48.196 48.101 48.271 3.7617 12 10 2 0 0 0 0.12527 1 8484 8484 0.6015 0 1 167630 8903 7049 5439 5444 11095 11095 -0.013957186091602125 FPWFVYPCN 9 Unmodified _FPWFVYPCN_ 0 0 0 L1M5_dup28184|chr9:14643400-14644747:-|2.03604795761654|0.4997839896190767|2.03|151.0|103|3|anti-sense L1M5_dup28184|chr9:14643400-14644747:-|2.03604795761654|0.4997839896190767|2.03|151.0|103|3|anti-sense L1M5_dup28184|chr9:14643400-14644747:-|2.03604795761654|0.4997839896190767|2.03|151.0|103|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7660522460938 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 113.6 1 117.23 116.73 117.73 3.6314 0 0 0 0.38299 1 27600 27600 4.756 0.42677 1 8904 9133 5440 5445 11096 11096 -0.06280984457544037 FPYGSFPYVA 10 Unmodified _FPYGSFPYVA_ 0 0 0 ENSG00000171103|ENST00000306108|TRMT61B ENSG00000171103|ENST00000306108|TRMT61B ENSG00000171103|ENST00000306108|TRMT61B MULTI-MSMS UPN47_class_I_Rep_2 3 574.2760620117188 2 574.276575 1146.5386 0.58847 0.00033794 -0.52285 -0.00030026 0.065617 3.7682E-05 574.2764618172332 89.324 0.083923 92.777 92.711 92.794 3.4525 13 10 2 0 0 0 0.54466 1 22190 22190 6.2058 0 1 41426 8905 4506 5441 5446 11097 11097 -0.028810617882982115 FPYHWCVH 8 Unmodified _FPYHWCVH_ 0 0 0 Tigger1_dup6059|chr7:158775027-158776855:-|7.844665700585566|0.3556855310976613|4.46|151.0|109|3|anti-sense Tigger1_dup6059|chr7:158775027-158776855:-|7.844665700585566|0.3556855310976613|4.46|151.0|109|3|anti-sense Tigger1_dup6059|chr7:158775027-158776855:-|7.844665700585566|0.3556855310976613|4.46|151.0|109|3|anti-sense MSMS UPN48_class_I_Rep_2 6 544.2779541015625 2 544.742179 1087.46981 NaN NaN NaN NaN NaN NaN NaN 20.39 1 24.038 23.538 24.538 3.648 0 0 0 0.40738 1 1743 1743 0.79363 0 1 8906 33143 5442 5447 11098 11098 -0.07043004569004552 FPYIRLCI 8 Unmodified _FPYIRLCI_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|168|1|anti-sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|168|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 512.2850341796875 2 512.786056 1023.55756 0.25005 0.00012822 -0.048014 -2.4621E-05 0.20204 0.0001036 513.2871236223805 55.58 0.7319 58.758 58.372 59.104 3.1779 76 45 2 0 0 0 0.72333 1 12740 12740 2.5775 0 1 80362 + 8907 29207 5443 5448 11099 11099 0.04672196301748954 FPYKKNNL 8 Unmodified _FPYKKNNL_ 0 0 0 REV__L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|31|3|sense REV__L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|31|3|sense MSMS UPN47_class_I_Rep_1 2 512.28466796875 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 55.26 1 58.739 58.239 59.239 3.4785 0 0 0 0.36148 1 12529 12529 19.439 0.18201 1 + 8908 27717 5444 5449 11100 11100 0.04454064168453442 FPYLRSLQ 8 Unmodified _FPYLRSLQ_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MSMS UPN47_class_I_Rep_3 4 512.28515625 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 55.506 1 58.684 58.184 59.184 3.1779 0 0 0 0.37141 1 12690 12690 17.113 0 1 8909 4239 5445 5450 11101 11101 0.04454064168453442 FPYLRSLQAL 10 Unmodified _FPYLRSLQAL_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS UPN47_class_I_Rep_1 2 604.3447875976562 2 604.345323 1206.67609 0.38313 0.00023154 -0.13137 -7.9394E-05 0.25175 0.00015215 604.34513844145 70.513 0.23387 73.884 73.705 73.939 3.3713 34 23 2 0 0 0 0.55949 2 17116 17116;17135 4.1895 0 1 112180 8910 4239 5446 5451 11102;11103 11102 0.08102266811124537 FPYLRSLQAL 10 Unmodified _FPYLRSLQAL_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MSMS UPN47_class_I_Rep_1 2 604.3446655273438 2 604.345323 1206.67609 NaN NaN NaN NaN NaN NaN NaN 70.597 1 73.969 73.469 74.469 3.3713 0 0 0 0.53105 1 17164 17164 6.1918 0 1 8911 4239 5446 5451 11104 11104 0.08102266811124537 FPYLRSLQAL 10 Unmodified _FPYLRSLQAL_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS UPN47_class_I_Rep_2 3 604.345947265625 2 604.345323 1206.67609 0.41704 0.00025204 0.29491 0.00017823 0.71195 0.00043027 604.3455392166983 71.042 0.54436 74.325 74.011 74.555 3.2828 74 50 2 0 0 0 0.50483 3 17343 17306;17343;17381 11.518 0 1 116760 8912 4239 5446 5451 11105;11106;11107 11106 0.08102266811124537 FPYLRSLQAL 10 Unmodified _FPYLRSLQAL_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MSMS UPN47_class_I_Rep_3 4 604.34521484375 2 604.345323 1206.67609 NaN NaN NaN NaN NaN NaN NaN 71.151 1 74.364 73.864 74.864 3.2127 0 0 0 0.53105 1 17444 17444 6.1918 0.40842 1 8913 4239 5446 5451 11108 11108 0.08102266811124537 FPYLRSLQAL 10 Unmodified _FPYLRSLQAL_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MSMS UPN47_class_I_Rep_3 4 604.34521484375 2 604.345323 1206.67609 NaN NaN NaN NaN NaN NaN NaN 71.338 1 74.557 74.057 75.057 3.2188 0 0 0 0.53105 1 17498 17498 2.4985 0 1 8914 4239 5446 5451 11109 11109 0.08102266811124537 FPYRSHFACR 10 Unmodified _FPYRSHFACR_ 0 0 0 THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|9|3|sense THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|9|3|sense THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|9|3|sense MSMS UPN47_class_I_Rep_2 3 641.8823852539062 2 642.308749 1282.60295 NaN NaN NaN NaN NaN NaN NaN 86.839 1 90.279 89.779 90.779 3.4407 0 0 0 0.53105 1 21593 21593 1.4819 0 1 8915 32879 5447 5452 11110 11110 -0.02705185183140202 FPYRVTLQ 8 Unmodified _FPYRVTLQ_ 0 0 0 REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense MSMS UPN47_class_I_Rep_1 2 512.2863159179688 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 54.987 1 58.489 57.989 58.989 3.5014 0 0 0 0.39615 1 12446 12446 9.3831 0 1 + 8916 31364 5448 5453 11111 11111 0.044540641684761795 FPYRVTLQ 8 Unmodified _FPYRVTLQ_ 0 0 0 REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense MSMS UPN47_class_I_Rep_1 2 512.284912109375 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 55.412 1 58.891 58.391 59.391 3.4785 0 0 0 0.40367 1 12575 12575 5.7319 0 1 + 8917 31364 5448 5453 11112 11112 0.044540641684761795 FPYRVTLQ 8 Unmodified _FPYRVTLQ_ 0 0 0 REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.284912109375 2 512.284734 1022.55492 0.19224 9.8484E-05 0.25754 0.00013194 0.44979 0.00023042 512.284879633353 55.452 0.56872 58.762 58.551 59.119 3.3102 50 31 2 0 0 0 0.82752 1 12627 12627 9.3831 0 1 100450 + 8918 31364 5448 5453 11113 11113 0.044540641684761795 FPYRVTLQ 8 Unmodified _FPYRVTLQ_ 0 0 0 REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 512.2850341796875 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 55.671 1 58.849 58.349 59.349 3.1779 0 0 0 0.39615 1 12740 12740 9.3831 0 1 + 8919 31364 5448 5453 11114 11114 0.044540641684761795 FPYRVTLQ 8 Unmodified _FPYRVTLQ_ 0 0 0 REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense REV__MER4E_dup590|chr14:60100644-60101391:+|2.751808384764255|0.1911192430022885|3.85|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 512.2852172851562 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 55.852 1 59.03 58.53 59.53 3.1779 0 0 0 0.39615 1 12796 12796 9.3831 0 1 + 8920 31364 5448 5453 11115 11115 0.044540641684761795 FPYVFHPTY 9 Unmodified _FPYVFHPTY_ 0 0 0 REV__L1MB2_dup3111|chr6:136571481-136571908:-|1.3615408584247195|0.2684155185841905|2.34|151.0|22|3|anti-sense REV__L1MB2_dup3111|chr6:136571481-136571908:-|1.3615408584247195|0.2684155185841905|2.34|151.0|22|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.7840576171875 2 585.784567 1169.55458 NaN NaN NaN NaN NaN NaN NaN 16.968 1 16.968 16.468 17.468 0 0 0 0 0.40038 1 1262 1262 0.6015 0 1 + 8921 25719 5449 5454 11116 11116 -0.0234135555137982 FPYYPLEIKL 10 Unmodified _FPYYPLEIKL_ 0 0 0 REV__L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|11|2|sense REV__L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 641.8592529296875 2 641.857732 1281.70091 NaN NaN NaN NaN NaN NaN NaN 106.5 1 110.13 109.63 110.63 3.6299 0 0 0 0.53105 1 25659 25659 3.5965 0.31518 1 + 8922 24819 5450 5455 11117 11117 0.07132901893828603 FPYYRRKF 8 Unmodified _FPYYRRKF_ 0 0 0 ENSG00000170122|ENST00000382500|FOXD4;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000184492|ENST00000306507|FOXD4L1 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 MSMS UPN48_class_I_Rep_1 5 588.8177490234375 2 588.819276 1175.624 NaN NaN NaN NaN NaN NaN NaN 112.73 1 116.36 115.86 116.86 3.6321 0 0 0 0.40738 1 27364 27364 0.79363 0.10326 1 8923 4454 5451 5456 11118 11118 0.04321148188000734 FQANRPDEHR 10 Unmodified _FQANRPDEHR_ 0 0 0 L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|28|1|sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|28|1|sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|28|1|sense MSMS UPN47_class_I_Rep_2 3 635.3070068359375 2 635.307792 1268.60103 NaN NaN NaN NaN NaN NaN NaN 46.607 1 49.958 49.458 50.458 3.3515 0 0 0 0.53105 1 9930 9930 1.3295 0.72803 1 8924 14854 5452 5457 11119 11119 -0.02252522667413359 FQARRTRK 8 Unmodified _FQARRTRK_ 0 0 0 L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|16|3|sense L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|16|3|sense L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|16|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.81689453125 2 531.817599 1061.62064 0.32953 0.00017525 -0.98359 -0.00052309 -0.65405 -0.00034784 531.8170551005361 83.158 0.12854 83.158 83.062 83.191 0 17 10 2 0 0 0 0.82752 1 19741 19741 1.8442 1.1539 1 273720 8925 13308 5453 5458 11120 11120 0.09229898134049108 FQDDPYLM 8 Unmodified _FQDDPYLM_ 0 0 0 PTCD3|p.Q417Sfs*35|1|0.13|ENSG00000132300|chr2:86131082-86131083|-/T|frameshift_variant;ENSG00000132300|ENST00000254630|PTCD3;ENST00000465560.5_1_2:86333370-86346707:+|nuORF PTCD3|p.Q417Sfs*35|1|0.13|ENSG00000132300|chr2:86131082-86131083|-/T|frameshift_variant PTCD3|p.Q417Sfs*35|1|0.13|ENSG00000132300|chr2:86131082-86131083|-/T|frameshift_variant MSMS UPN48_class_I_Rep_3 7 514.7227783203125 2 514.723318 1027.43208 NaN NaN NaN NaN NaN NaN NaN 112.41 1 116.07 115.57 116.57 3.6614 0 0 0 0.40738 1 26707 26707 0.79363 0 1 8926 2742 5454 5459 11121 11121 -0.08053560345138067 FQDISYDT 8 Unmodified _FQDISYDT_ 0 0 0 REV__L1MB8_dup11023|chr11:68472625-68473007:-|1.1965547722224927|0.027368378701661|5.45|151.0|17|1|anti-sense REV__L1MB8_dup11023|chr11:68472625-68473007:-|1.1965547722224927|0.027368378701661|5.45|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.7196044921875 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 116.61 1 120.24 119.74 120.74 3.6312 0 0 0 0.4044 1 27751 27751 4.756 0 1 + 8927 26342 5455 5460 11122 11122 -0.07567094852697664 FQEKRRQLKKK 11 Unmodified _FQEKRRQLKKK_ 0 0 0 REV__L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|17|2|sense REV__L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 496.97503662109375 3 496.975565 1487.90486 NaN NaN NaN NaN NaN NaN NaN 106.81 1 110.48 109.98 110.98 3.6724 0 0 0 0.38417 1 26176 26176 0.094841 0 1 + 8928 26296 5456 5461 11123 11123 0.18042859107868026 FQFFPTQRS 9 Unmodified _FQFFPTQRS_ 0 0 0 L1ME2z_dup2247|chr6:2276184-2276649:+|1.484763779868835|0.033974732584943|5.45|151.0|29|2|anti-sense L1ME2z_dup2247|chr6:2276184-2276649:+|1.484763779868835|0.033974732584943|5.45|151.0|29|2|anti-sense L1ME2z_dup2247|chr6:2276184-2276649:+|1.484763779868835|0.033974732584943|5.45|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 579.75634765625 2 579.290548 1156.56654 NaN NaN NaN NaN NaN NaN NaN 49.157 1 52.391 51.891 52.891 3.2345 0 0 0 0.39598 1 10751 10751 1.6526 0.32309 1 8929 12555 5457 5462 11124 11124 -0.005477388081999379 FQFFSIKRR 9 Unmodified _FQFFSIKRR_ 0 0 0 REV__HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|12|1|sense REV__HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 614.8528442382812 2 614.851107 1227.68766 NaN NaN NaN NaN NaN NaN NaN 29.829 1 33.379 32.879 33.879 3.5499 0 0 0 0.4007 1 4204 4204 0.52476 0 1 + 8930 23799 5458 5463 11125 11125 0.08292508625140727 FQFQIYYK 8 Unmodified _FQFQIYYK_ 0 0 0 L1MB5_dup1685|chr3:136706087-136707513:+|3.343359930458113|0.0326438052846175|6.68|151.0|41|3|sense L1MB5_dup1685|chr3:136706087-136707513:+|3.343359930458113|0.0326438052846175|6.68|151.0|41|3|sense L1MB5_dup1685|chr3:136706087-136707513:+|3.343359930458113|0.0326438052846175|6.68|151.0|41|3|sense MSMS UPN47_class_I_Rep_1 2 568.7921142578125 2 568.792392 1135.57023 NaN NaN NaN NaN NaN NaN NaN 26.173 1 29.935 29.435 30.435 3.7624 0 0 0 0.40746 1 3705 3705 0.69038 0 1 8931 10594 5459 5464 11126 11126 0.007869309656371115 FQHFSITFG 9 Unmodified _FQHFSITFG_ 0 0 0 REV__L1MA8_dup4825|chr8:23152670-23154337:+|1.3264783552140031|0.0744781155063724|4.15|150.0|72|1|anti-sense REV__L1MA8_dup4825|chr8:23152670-23154337:+|1.3264783552140031|0.0744781155063724|4.15|150.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 542.2647094726562 2 542.266542 1082.51853 NaN NaN NaN NaN NaN NaN NaN 37.572 1 37.572 37.072 38.072 0 0 0 0 0.36505 1 7077 7077 7.2892 0 1 + 8932 25559 5460 5465 11127 11127 -0.019428127282708374 FQIDVVHL 8 Unmodified _FQIDVVHL_ 0 0 0 REV__L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|213|3|anti-sense REV__L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|213|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.77203369140625 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 20.835 1 24.381 23.881 24.881 3.5454 0 0 0 0.40738 1 1816 1816 0.79363 0 1 + 8933 26071 5461 5466 11128 11128 0.042383752771456784 FQIDVVHL 8 Unmodified _FQIDVVHL_ 0 0 0 REV__L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|213|3|anti-sense REV__L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|213|3|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7723693847656 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 113.23 1 116.9 116.4 117.4 3.6648 0 0 0 0.40738 1 27013 27013 0.79363 0 1 + 8934 26071 5461 5466 11129 11129 0.042383752771456784 FQIIAYAL 8 Unmodified _FQIIAYAL_ 0 0 0 REV__ENSG00000104969|ENST00000221566|SGTA REV__ENSG00000104969|ENST00000221566|SGTA MSMS UPN47_class_I_Rep_3 4 469.76885986328125 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 29.611 1 32.934 32.434 33.434 3.3235 0 0 0 0.40604 1 4811 4811 2.5775 0.27475 1 + 8935 18277 5462 5467 11130 11130 0.056041609082285504 FQKGKNKGRA 10 Unmodified _FQKGKNKGRA_ 0 0 0 REV__L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|25|2|sense REV__L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.3309936523438 2 567.330539 1132.64652 0.47367 0.00026873 -0.14877 -8.4399E-05 0.32491 0.00018433 567.3302785217568 81.63 0.88196 84.953 84.65 85.532 3.3231 129 97 2 0 0 0 0.56333 1 20414 20414 1.4819 0.79152 1 168080 + 8936 25208 5463 5468 11131 11131 0.0855074758567298 FQKVITEY 8 Unmodified _FQKVITEY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MSMS UPN46_class_I_Rep_3 1 514.2764282226562 2 514.276575 1026.5386 NaN NaN NaN NaN NaN NaN NaN 46.138 1 46.138 45.638 46.638 0 0 0 0 0.28403 1 9437 9437 34.402 13.948 1 8937 5352 5464 5469 11132 11132 0.026389382117031346 FQLPLKYAKFP 11 Unmodified _FQLPLKYAKFP_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|50|2|sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|50|2|sense MSMS UPN48_class_I_Rep_1 5 451.2630310058594 3 451.263941 1350.76999 NaN NaN NaN NaN NaN NaN NaN 115.84 1 119.47 118.97 119.97 3.6282 0 0 0 0.38417 1 28192 28192 0.50596 0 1 + 8938 23667 5465 5470 11133 11133 0.108639859133973 FQLTQLTEL 9 Unmodified _FQLTQLTEL_ 0 0 0 REV__MER21C_dup1143|chr3:142086183-142087193:-|1.645576425697547|0.0134962055767053|6.93|151.0|68|3|anti-sense REV__MER21C_dup1143|chr3:142086183-142087193:-|1.645576425697547|0.0134962055767053|6.93|151.0|68|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.8005981445312 2 546.800414 1091.58628 0.36172 0.00019779 0.12009 6.5666E-05 0.48181 0.00026345 546.8004247116418 64.813 1.3148 68.069 67.53 68.845 3.2556 288 102 4 0 0 0 0.037922 2 15392 15392;15429 53.833 4.2785 1 2440600 + 8939 31221 5466 5471 11134;11135 11134 0.04414592411899321 FQNITAYC 8 Unmodified _FQNITAYC_ 0 0 0 Tigger1_dup6456|chr8:98197135-98198943:-|1.6817522531506188|0.269014962165992|2.64|151.0|26|2|sense Tigger1_dup6456|chr8:98197135-98198943:-|1.6817522531506188|0.269014962165992|2.64|151.0|26|2|sense Tigger1_dup6456|chr8:98197135-98198943:-|1.6817522531506188|0.269014962165992|2.64|151.0|26|2|sense MSMS UPN47_class_I_Rep_1 2 480.2953796386719 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 116.85 1 120.45 119.95 120.95 3.6036 0 0 0 0.40738 1 28951 28951 0.79363 0 1 8940 33160 5467 5472 11136 11136 -0.05902123279713578 FQNKVIKR 8 Unmodified _FQNKVIKR_ 0 0 0 ENST00000295598.9_1_1:116926636-116926729:+|nuORF ENST00000295598.9_1_1:116926636-116926729:+|nuORF ENST00000295598.9_1_1:116926636-116926729:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 516.8187866210938 2 516.819276 1031.624 -0.22893 -0.00011831 -0.041553 -2.1476E-05 -0.27048 -0.00013979 516.8190041776022 15.503 0.36229 19 18.88 19.242 3.4968 56 41 2 0 0 0 0.82752 1 826 826 4.756 0 1 42337 8941 6055 5468 5473 11137 11137 0.10945148188034182 FQNPFRSEL 9 Unmodified _FQNPFRSEL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS UPN46_class_I_Rep_3 1 569.2880249023438 2 569.288005 1136.56146 0.40382 0.00022989 -0.59978 -0.00034145 -0.19596 -0.00011156 569.2878059692284 63.714 0.36276 63.714 63.382 63.745 0 70 44 2 0 0 0 0.26468 1 14261 14261 16.149 3.9084 1 385870 8942 1108 5469 5474 11138 11138 -0.0013604267080609134 FQQFIVLLE 9 Unmodified _FQQFIVLLE_ 0 0 0 L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|211|1|anti-sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|211|1|anti-sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|211|1|anti-sense MSMS UPN47_class_I_Rep_1 2 569.2041015625 2 568.82115 1135.62775 NaN NaN NaN NaN NaN NaN NaN 114.23 1 117.81 117.31 118.31 3.5809 0 0 0 0.4007 1 28218 28218 0.52476 0 1 8943 13608 5470 5475 11139 11139 0.06535773171231085 FQRGQRRRR 9 Unmodified _FQRGQRRRR_ 0 0 0 L1PA5_dup4157|chr5:177635732-177639675:-|5.341832411276024|0.084887734929306|5.98|151.0|42|2|sense L1PA5_dup4157|chr5:177635732-177639675:-|5.341832411276024|0.084887734929306|5.98|151.0|42|2|sense L1PA5_dup4157|chr5:177635732-177639675:-|5.341832411276024|0.084887734929306|5.98|151.0|42|2|sense MSMS UPN46_class_I_Rep_3 1 630.3695068359375 2 630.368853 1258.72315 NaN NaN NaN NaN NaN NaN NaN 41.407 1 41.407 40.907 41.907 0 0 0 0 0.4007 1 8115 8115 0.52476 0 1 8944 14471 5471 5476 11140 11140 0.10413983925491266 FQRKRRHKL 9 Unmodified _FQRKRRHKL_ 0 0 0 ENSG00000214376|ENST00000409977|VSTM5 ENSG00000214376|ENST00000409977|VSTM5 ENSG00000214376|ENST00000409977|VSTM5 MULTI-MSMS UPN47_class_I_Rep_3 4 635.3958129882812 2 634.894172 1267.77379 0.51356 0.00032606 -1.7826 -0.0011318 -1.2691 -0.00080573 634.8927114424824 98.265 0.20894 101.7 101.53 101.74 3.4328 43 27 2 0 0 0 0.48643 1 24335 24335 2.0598 0.57785 1 182600 8945 5615 5472 5477 11141 11141 0.15061513250498137 FQRSSPFPHC 10 Unmodified _FQRSSPFPHC_ 0 0 0 REV__L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|18|1|sense REV__L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|18|1|sense MSMS UPN48_class_I_Rep_2 6 603.2811889648438 2 603.279657 1204.54476 NaN NaN NaN NaN NaN NaN NaN 68.872 1 72.38 71.88 72.88 3.5083 0 0 0 0.53105 1 15914 15914 1.6526 0.17072 1 + 8946 24116 5473 5478 11142 11142 -0.04932866828403348 FQSHCNWKR 9 Unmodified _FQSHCNWKR_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|297|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|297|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|297|2|anti-sense MSMS UPN47_class_I_Rep_3 4 603.2854614257812 2 603.285274 1204.556 NaN NaN NaN NaN NaN NaN NaN 40.285 1 43.522 43.022 44.022 3.2372 0 0 0 0.39518 1 8053 8053 1.8442 0 1 8947 8240 5474 5479 11143 11143 -0.03810044734291296 FQSMATFFTG 10 Unmodified _FQSMATFFTG_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS UPN48_class_I_Rep_3 7 568.7587890625 2 568.757692 1135.50083 NaN NaN NaN NaN NaN NaN NaN 65.046 1 68.554 68.054 69.054 3.5077 0 0 0 0.53105 1 14669 14669 1.3295 0.36726 1 8948 1264 5475 5480 11144 11144 -0.06149896045417336 FQSMQTVF 8 Unmodified _FQSMQTVF_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MSMS UPN48_class_I_Rep_3 7 494.2340087890625 2 494.233853 986.453153 NaN NaN NaN NaN NaN NaN NaN 118.02 1 121.63 121.13 122.13 3.6124 0 0 0 0.40625 1 28068 28068 2.3027 0 1 8949 2905 5476 5481 11145 11145 -0.04061550245580747 FQSNCIIL 8 Unmodified _FQSNCIIL_ 0 0 0 L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 469.7358703613281 2 469.244221 936.473888 -0.67484 -0.00031667 0.40807 0.00019149 -0.26677 -0.00012518 469.24437066151984 29.258 0.81725 32.582 32.135 32.953 3.3235 117 67 2 0 0 0 0.82752 1 4797 4797 2.5775 0 1 96017 8950 10889 5477 5482 11146 11146 0.0031104013407912134 FQSVYIYL 8 Unmodified _FQSVYIYL_ 0 0 0 L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|179|3|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|179|3|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|179|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.7723388671875 2 516.773668 1031.53278 NaN NaN NaN NaN NaN NaN NaN 77.287 1 80.704 80.204 81.204 3.4165 0 0 0 0.40604 1 19169 19169 2.5775 0.27475 1 8951 11235 5478 5483 11147 11147 0.018278397000358382 FQSWFGQY 8 Unmodified _FQSWFGQY_ 0 0 0 HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|22|3|sense HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|22|3|sense HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 531.7461547851562 2 531.737617 1061.46068 NaN NaN NaN NaN NaN NaN NaN 24.795 1 28.544 28.044 29.044 3.7495 0 0 0 0.36705 1 3302 3302 18.135 4.6271 1 8952 8270 5479 5484 11148 11148 -0.06759074653655261 FQTDDSDIKY 10 Unmodified _FQTDDSDIKY_ 0 0 0 REV__ADAM20|p.G570Wfs*39|1|0.03|ENSG00000134007|chr14:70523200-70523201|-/A|frameshift_variant REV__ADAM20|p.G570Wfs*39|1|0.03|ENSG00000134007|chr14:70523200-70523201|-/A|frameshift_variant MSMS UPN48_class_I_Rep_3 7 616.2770385742188 2 616.2775 1230.54045 NaN NaN NaN NaN NaN NaN NaN 14.029 1 17.563 17.063 18.063 3.5341 0 0 0 0.53105 1 352 352 1.3295 0 1 + 8953 16904 5480 5485 11149 11149 -0.0656009756100957 FQTEGLFQIF 10 Unmodified _FQTEGLFQIF_ 0 0 0 REV__ENSG00000130779.21,CLIP1,chr12,-,I12.1,122344045,122347374|40|6.65|1|intron REV__ENSG00000130779.21,CLIP1,chr12,-,I12.1,122344045,122347374|40|6.65|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 615.3142700195312 2 615.313689 1228.61282 0.40963 0.00025205 -0.1404 -8.6389E-05 0.26923 0.00016566 615.313485182066 72.34 0.77847 75.72 75.348 76.126 3.3799 143 60 3 0 0 0 0.48801 3 17785 17601;17759;17785 12.873 2.722 1 312470 + 8954 18953 5481 5486 11150;11151;11152 11152 0.007662813032311533 FQTEGLFQIF 10 Unmodified _FQTEGLFQIF_ 0 0 0 REV__ENSG00000130779.21,CLIP1,chr12,-,I12.1,122344045,122347374|40|6.65|1|intron REV__ENSG00000130779.21,CLIP1,chr12,-,I12.1,122344045,122347374|40|6.65|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 615.3143920898438 2 615.313689 1228.61282 0.43112 0.00026527 -0.079098 -4.867E-05 0.35202 0.0002166 615.3135654630979 72.676 0.83508 75.973 75.444 76.28 3.2971 165 72 3 0 0 0 0.36548 1 17801 17801 22.658 1.0679 1 271520 + 8955 18953 5481 5486 11153 11153 0.007662813032311533 FQTEVGKQL 9 Unmodified _FQTEVGKQL_ 0 0 0 ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF ENSG00000160255|ENST00000652462|ITGB2 ENSG00000160255|ENST00000652462|ITGB2 MSMS UPN46_class_I_Rep_3 1 525.2840576171875 2 525.284931 1048.55531 NaN NaN NaN NaN NaN NaN NaN 42.746 1 42.746 42.246 43.246 0 0 0 0 0.026535 1 8487 8487 49.554 13.048 1 8956 3862 5482 5487 11154 11154 0.03297439097673305 FQVKLLYRMR 10 Unmodified _FQVKLLYRMR_ 0 0 0 REV__ENSG00000129484|ENST00000429687|PARP2 REV__ENSG00000129484|ENST00000429687|PARP2 MSMS UPN48_class_I_Rep_1 5 451.932861328125 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 91.634 1 95.26 94.76 95.76 3.626 0 0 0 0.53105 1 22018 22018 1.7423 0 1 + 8957 18924 5483 5488 11155 11155 0.112819665043844 FQYESKVFY 9 Unmodified _FQYESKVFY_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF ENSG00000128245|ENST00000248975|YWHAH ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS UPN46_class_I_Rep_3 1 605.7935791015625 2 605.792589 1209.57063 0.52268 0.00031663 0.15727 9.5273E-05 0.67995 0.00041191 605.792606764226 58.569 0.51912 58.569 58.319 58.838 0 100 59 2 0 0 0 0.048729 5 12875 12841;12875;12884;12922;12943 49.527 35.621 1 254960 8958 2585 5484 5489 11156;11157;11158;11159;11160 11157 -0.025776941051390168 FQYFNMRLR 9 Unmodified _FQYFNMRLR_ 0 0 0 HERVIP10B3-int_dup17|chr1:235670449-235671014:+|2.855335384521671|0.1054951428693978|4.76|150.0|28|2|anti-sense HERVIP10B3-int_dup17|chr1:235670449-235671014:+|2.855335384521671|0.1054951428693978|4.76|150.0|28|2|anti-sense HERVIP10B3-int_dup17|chr1:235670449-235671014:+|2.855335384521671|0.1054951428693978|4.76|150.0|28|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 638.330078125 2 637.826775 1273.639 0.49706 0.00031704 1.1358 0.00072447 1.6329 0.0010415 637.8275394855955 86.562 0.12167 90.28 90.212 90.333 3.7171 19 16 2 0 0 0 0.48846 1 20605 20605 1.8442 0.19162 1 74986 8959 8185 5485 5490 11161 11161 0.0131227199372006 FQYHTVIAVD 10 Unmodified _FQYHTVIAVD_ 0 0 0 L1MB7_dup19953|chr17:45530687-45531192:+|1.303239965205952|0.0680687410660423|4.26|151.0|25|1|anti-sense L1MB7_dup19953|chr17:45530687-45531192:+|1.303239965205952|0.0680687410660423|4.26|151.0|25|1|anti-sense L1MB7_dup19953|chr17:45530687-45531192:+|1.303239965205952|0.0680687410660423|4.26|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_2 6 596.8036499023438 2 596.803488 1191.59242 NaN NaN NaN NaN NaN NaN NaN 45.242 1 49 48.5 49.5 3.7579 0 0 0 0.53105 1 8712 8712 2.9952 1.151 1 8960 10781 5486 5491 11162 11162 0.004291106434266112 FQYKPMSYL 9 Unmodified _FQYKPMSYL_ 0 0 0 L1MC5_dup11558|chr13:94584366-94585062:+|1.260551361563973|0.2578863234662725|2.29|150.0|11|2|sense L1MC5_dup11558|chr13:94584366-94585062:+|1.260551361563973|0.2578863234662725|2.29|150.0|11|2|sense L1MC5_dup11558|chr13:94584366-94585062:+|1.260551361563973|0.2578863234662725|2.29|150.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 588.7901611328125 2 588.791535 1175.56852 NaN NaN NaN NaN NaN NaN NaN 54.41 1 54.41 53.91 54.91 0 0 0 0 0.39518 1 11778 11778 1.8442 0.19162 1 8961 11657 5487 5492 11163 11163 -0.012244461145883179 FQYVIQDRE 9 Unmodified _FQYVIQDRE_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|191|2|anti-sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|191|2|anti-sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|191|2|anti-sense MSMS UPN48_class_I_Rep_1 5 599.2987670898438 2 599.29857 1196.58259 NaN NaN NaN NaN NaN NaN NaN 50.853 1 54.378 53.878 54.878 3.5246 0 0 0 0.39428 1 10428 10428 2.0598 0.21551 1 8962 8453 5488 5493 11164 11164 -0.007840773619591346 FRACYWYI 8 Unmodified _FRACYWYI_ 0 0 0 L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|149|1|anti-sense;L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|194|2|anti-sense;L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|347|3|anti-sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|330|3|anti-sense;L1PA5_dup10638|chr18:49420541-49426551:+|1.4083784154879329|0.0584780063041104|4.59|151.0|330|3|anti-sense;L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|273|2|anti-sense L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|149|1|anti-sense L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|149|1|anti-sense MSMS UPN48_class_I_Rep_1 5 561.2660522460938 2 561.265487 1120.51642 NaN NaN NaN NaN NaN NaN NaN 34.626 1 38.14 37.64 38.64 3.5144 0 0 0 0.40746 1 5563 5563 0.69038 0 1 8963 14316 5489 5494 11165 11165 -0.039015647377254936 FRDKALMEP 9 Unmodified _FRDKALMEP_ 0 0 0 Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|59|1|anti-sense;Tigger2_dup419|chr2:171000400-171001800:-|3.25780311984261|0.2416632575885023|3.75|151.0|74|2|anti-sense;Tigger2_dup44|chr1:52037511-52037919:-|1.0460229162700496|0.1807387355644971|2.53|151.0|18|2|anti-sense;Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|82|2|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|59|1|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_3 7 553.7872314453125 2 553.786784 1105.55902 NaN NaN NaN NaN NaN NaN NaN 69.398 1 72.911 72.411 73.411 3.5128 0 0 0 0.38639 1 15984 15984 3.9444 0 1 8964 33273 5490 5495 11166 11166 0.010457855998765808 FRDNALLSL 9 Unmodified _FRDNALLSL_ 0 0 0 REV__ENST00000443317.1_1_20:32802260-32803361:-|nuORF REV__ENST00000443317.1_1_20:32802260-32803361:-|nuORF MSMS UPN47_class_I_Rep_3 4 524.7929077148438 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 61.854 1 65.021 64.521 65.521 3.1667 0 0 0 0.38916 1 14622 14622 3.2813 0 1 + 8965 22341 5491 5496 11167 11167 0.049411453345555856 FRDPPPSAY 9 Unmodified _FRDPPPSAY_ 0 0 0 MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|53|3|anti-sense MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|53|3|anti-sense MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|53|3|anti-sense MSMS UPN47_class_I_Rep_3 4 525.254150390625 2 525.256174 1048.49779 NaN NaN NaN NaN NaN NaN NaN 31.129 1 34.428 33.928 34.928 3.2991 0 0 0 0.38073 1 5264 5264 5.2969 2.0156 1 8966 15792 5492 5497 11168 11168 -0.024514031078979315 FRFDSDMSQV 10 Unmodified _FRFDSDMSQV_ 0 0 0 REV__L1MD2_dup7379|chr10:100493387-100493941:+|1.1735624954406574|0.4485799321838061|1.39|151.0|29|3|anti-sense REV__L1MD2_dup7379|chr10:100493387-100493941:+|1.1735624954406574|0.4485799321838061|1.39|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_1 5 616.2764892578125 2 616.274238 1230.53392 NaN NaN NaN NaN NaN NaN NaN 14.17 1 17.686 17.186 18.186 3.5156 0 0 0 0.53105 1 367 367 3.5965 1.9439 1 + 8967 27429 5493 5498 11169 11169 -0.0721231399336375 FRFEALTYV 9 Unmodified _FRFEALTYV_ 0 0 0 REV__LTR8A_dup1250|chr17:72767828-72768453:-|1.0267428236043694|0.0063955655754632|7.33|151.0|43|3|anti-sense REV__LTR8A_dup1250|chr17:72767828-72768453:-|1.0267428236043694|0.0063955655754632|7.33|151.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 572.939697265625 2 573.303124 1144.5917 NaN NaN NaN NaN NaN NaN NaN 39.304 1 39.304 38.804 39.804 0 0 0 0 0.39428 1 7544 7544 2.0598 0.21551 1 + 8968 31036 5494 5499 11170 11170 0.025183159943708233 FRFFHTHTY 9 Unmodified _FRFFHTHTY_ 0 0 0 L1MC5_dup2121|chr2:227525229-227526183:-|3.689740533931616|0.3775687604580789|3.29|151.0|42|1|anti-sense L1MC5_dup2121|chr2:227525229-227526183:-|3.689740533931616|0.3775687604580789|3.29|151.0|42|1|anti-sense L1MC5_dup2121|chr2:227525229-227526183:-|3.689740533931616|0.3775687604580789|3.29|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 628.303466796875 2 628.30399 1254.59343 0.39 0.00024504 0.17239 0.00010831 0.56239 0.00035335 628.3032866802105 61.136 0.58799 64.301 64.02 64.608 3.1651 98 50 3 0 0 0 0.49026 1 14327 14327 1.6526 0 1 213300 8969 11678 5495 5500 11171 11171 -0.02368630196997401 FRFFKNYL 8 Unmodified _FRFFKNYL_ 0 0 0 L1M5_dup44478|chr15:28133308-28134691:-|1.1784983902601422|0.2462482461918847|2.26|151.0|76|2|anti-sense L1M5_dup44478|chr15:28133308-28134691:-|1.1784983902601422|0.2462482461918847|2.26|151.0|76|2|anti-sense L1M5_dup44478|chr15:28133308-28134691:-|1.1784983902601422|0.2462482461918847|2.26|151.0|76|2|anti-sense MSMS UPN47_class_I_Rep_2 3 567.8092041015625 2 567.808377 1133.6022 NaN NaN NaN NaN NaN NaN NaN 27.548 1 31.046 30.546 31.546 3.4986 0 0 0 0.40746 1 4152 4152 0.69038 0 1 8970 9173 5496 5501 11172 11172 0.04074343439469885 FRFGLFLFCLF 11 Unmodified _FRFGLFLFCLF_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|360|3|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|360|3|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|360|3|anti-sense MSMS UPN46_class_I_Rep_3 1 470.5841064453125 3 470.586138 1408.73659 NaN NaN NaN NaN NaN NaN NaN 102.29 1 102.29 101.79 102.79 0 0 0 0 0.38417 1 24961 24961 0.50596 0 1 8971 14148 5497 5502 11173 11173 0.04856660869859297 FRFKHLVHLL 10 Unmodified _FRFKHLVHLL_ 0 0 0 REV__ENSG00000059377|ENST00000448866|TBXAS1 REV__ENSG00000059377|ENST00000448866|TBXAS1 MULTI-SECPEP UPN47_class_I_Rep_2 3 437.2684326171875 3 437.267909 1308.7819 -0.26327 -0.00011512 0.6623 0.0002896 0.39902 0.00017448 437.26818828117024 53.799 0.092384 57.126 57.08 57.173 3.3266 7 5 2 0 0 0 0.84575 1 12122 12122 0.15932 0 1 33449 + 8972 17717 5498 5503 11174 11174 0.13985647447270821 FRFLIKIFIFN 11 Unmodified _FRFLIKIFIFN_ 0 0 0 REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.62652587890625 3 486.627102 1456.85948 0.25247 0.00012286 0.33926 0.00016509 0.59173 0.00028795 486.6271631480528 100.06 0.31422 103.82 103.68 104 3.7575 79 43 2 0 0 0 0.68081 1 23764 23764 0.45452 0.087843 1 236150 + 8973 28451 5499 5504 11175 11175 0.14932240592793278 FRFLIKIFIFN 11 Unmodified _FRFLIKIFIFN_ 0 0 0 REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 486.627102 1456.85948 0.2844 0.0001384 1.6681 0.00081174 1.9525 0.00095014 486.62817153554755 104.26 0.06926 104.26 104.19 104.26 0 0.32791 0.0015777 NaN 0.45452 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 97427 + 8974 28451 5499 5504 0.14932240592793278 FRFLIKIFIFN 11 Unmodified _FRFLIKIFIFN_ 0 0 0 REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 486.627102 1456.85948 0.25946 0.00012626 0.40211 0.00019568 0.66157 0.00032194 486.9615951686515 100.13 0.054932 103.92 103.89 103.95 3.7942 -0.010756 -0.00027051 NaN 0.45452 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 52888 + 8975 28451 5499 5504 0.14932240592793278 FRFLIKIFIFN 11 Unmodified _FRFLIKIFIFN_ 0 0 0 REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense REV__L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 486.627102 1456.85948 0.13938 6.7826E-05 0.67549 0.00032871 0.81487 0.00039654 486.627336372845 100.12 0.67542 103.72 103.45 104.13 3.6084 -0.20681 0.0001286 NaN 0.45452 153 87 3 NaN NaN NaN NaN 0 NaN NaN 0 320130 + 8976 28451 5499 5504 0.14932240592793278 FRFPKKWVA 9 Unmodified _FRFPKKWVA_ 0 0 0 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 MSMS UPN48_class_I_Rep_1 5 589.8450317382812 2 589.845294 1177.67603 NaN NaN NaN NaN NaN NaN NaN 86.726 1 90.339 89.839 90.839 3.613 0 0 0 0.39428 1 20781 20781 2.0598 0.21551 1 + 8977 32099 5500 5505 11176 11176 0.09430311601795438 FRFVGGFFQY 10 Unmodified _FRFVGGFFQY_ 0 0 0 REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|167|3|anti-sense REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|167|3|anti-sense MSMS UPN48_class_I_Rep_2 6 634.3165283203125 2 634.316566 1266.61858 NaN NaN NaN NaN NaN NaN NaN 45.964 1 49.722 49.222 50.222 3.7579 0 0 0 0.53105 1 8929 8929 1.4819 0 1 + 8978 25191 5501 5506 11177 11177 -0.004065753944132666 FRFYGPDLL 9 Unmodified _FRFYGPDLL_ 0 0 0 ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR MSMS UPN48_class_I_Rep_1 5 564.2960815429688 2 564.297842 1126.58113 NaN NaN NaN NaN NaN NaN NaN 23.802 1 27.367 26.867 27.867 3.5655 0 0 0 0.39518 1 2535 2535 1.8442 1.1539 1 8979 4903 5502 5507 11178 11178 0.022903333399654002 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3349609375 2 562.334759 1122.65496 0.12034 6.767E-05 0.14919 8.3895E-05 0.26953 0.00015157 562.8363358800104 27.053 0.33661 27.053 26.94 27.277 0 53 27 3 0 0 0 0.56033 1 4010 4010 3.5965 0.8613 1 1128700 8980 14855 5503 5508 11179 11179 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3344116210938 2 562.334759 1122.65496 0.21158 0.00011898 0.18632 0.00010478 0.3979 0.00022375 562.3346655544383 31.187 0.15073 31.187 31.175 31.326 0 20 9 4 0 0 0 0.56333 1 5196 5196 1.4819 0.8804 1 594750 8981 14855 5503 5508 11180 11180 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.23507 0.00013219 -0.27048 -0.0001521 -0.035403 -1.9908E-05 562.3345113260993 32.354 0.086201 32.354 32.285 32.371 0 10 6 2 0 0 0 0.56033 1 5525 5525 3.5965 0 1 353280 8982 14855 5503 5508 11181 11181 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.33447265625 2 562.334759 1122.65496 0.50602 0.00028455 0.082506 4.6396E-05 0.58852 0.00033095 562.3342568796521 112.55 0.091988 116.12 116.08 116.17 3.572 13 7 3 0 0 0 0.52083 1 27757 27757 9.3831 2.66 1 1037700 8983 14855 5503 5508 11182 11182 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.334716796875 2 562.334759 1122.65496 0.63501 0.00035709 0.1637 9.2057E-05 0.79871 0.00044914 562.3343733601961 109.34 0.88783 112.87 112.69 113.58 3.5307 299 123 3 0 0 0 0.54466 1 26684 26684 6.2058 1.8765 1 10055000 8984 14855 5503 5508 11183 11183 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MSMS UPN47_class_I_Rep_2 3 562.3352661132812 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 108.57 1 112.11 111.61 112.61 3.5333 0 0 0 0.53105 1 26348 26348 3.5965 0 1 8985 14855 5503 5508 11184 11184 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3350219726562 2 562.334759 1122.65496 0.50411 0.00028348 0.24776 0.00013933 0.75187 0.0004228 562.3343932343262 109.44 0.66056 112.97 112.93 113.59 3.5347 201 94 3 0 0 0 0.54466 2 26929 26929;26962 6.2058 1.8765 1 1926600 8986 14855 5503 5508 11185;11186 11185 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MSMS UPN48_class_I_Rep_1 5 562.3345336914062 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 108.86 1 112.49 111.99 112.99 3.6321 0 0 0 0.53105 1 26387 26387 8.7454 0.58988 1 8987 14855 5503 5508 11187 11187 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.3349609375 2 562.334759 1122.65496 0.49266 0.00027704 0.53194 0.00029913 1.0246 0.00057617 562.3344506126889 108.69 0.89131 112.36 112.23 113.12 3.6746 225 100 4 0 0 0 0.54822 1 25946 25946 5.7319 1.4026 1 76886000 8988 14855 5503 5508 11188 11188 0.09854301502264207 FRGKFIALTA 10 Unmodified _FRGKFIALTA_ 0 0 0 L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|78|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.334716796875 2 562.334759 1122.65496 0.49269 0.00027706 -0.45019 -0.00025316 0.042498 2.3898E-05 562.3343212586504 109.22 0.75874 112.89 112.81 113.57 3.6715 192 102 2 0 0 0 0.54466 1 26026 26026 6.2058 1.8765 1 3580200 8989 14855 5503 5508 11189 11189 0.09854301502264207 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3484497070312 2 584.347866 1166.68118 0.31697 0.00018522 0.30171 0.0001763 0.61868 0.00036152 584.3480053252479 32.354 0.086201 32.354 32.285 32.371 0 14 6 3 0 0 0 0.56333 1 5514 5514 1.4819 0.15237 1 380030 + 8990 26121 5504 5509 11190 11190 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.345703125 2 584.347866 1166.68118 0.52623 0.0003075 0.53287 0.00031138 1.0591 0.00061888 584.3480600711414 108.83 0.69348 108.83 108.68 109.37 0 104 52 3 0 0 0 0.51565 1 26813 26813 10.074 3.8681 1 32950000 + 8991 26121 5504 5509 11191 11191 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3480834960938 2 584.347866 1166.68118 0.52628 0.00030753 0.098214 5.7391E-05 0.6245 0.00036492 584.3479142999092 109.47 0.27286 109.47 109.36 109.63 0 49 22 3 0 0 0 0.51565 1 26862 26862 10.074 3.8681 1 5393300 + 8992 26121 5504 5509 11192 11192 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 584.3479614257812 2 584.347866 1166.68118 0.49902 0.0002916 0.58959 0.00034453 1.0886 0.00063613 584.3480727789824 108.65 0.62185 112.29 112.17 112.79 3.6355 170 56 4 0 0 0 0.51565 1 26872 26872 10.074 3.3508 1 96538000 + 8993 26121 5504 5509 11193 11193 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 584.347866 1166.68118 0.63489 0.000371 0.47618 0.00027825 1.1111 0.00064925 584.3480234873408 108.68 0.65614 112.21 112.07 112.73 3.5333 -0.078513 -2.7812E-05 NaN 10.074 247 77 4 NaN NaN NaN NaN 0 NaN NaN 0 70025000 + 8994 26121 5504 5509 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 584.347866 1166.68118 0.50699 0.00029626 0.54241 0.00031696 1.0494 0.00061322 584.3480427142958 108.68 0.70868 112.22 112.07 112.78 3.5382 -0.075992 4.9593E-05 NaN 10.074 246 83 4 NaN NaN NaN NaN 0 NaN NaN 0 78201000 + 8995 26121 5504 5509 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 584.347866 1166.68118 0.40668 0.00023764 0.49003 0.00028635 0.89671 0.00052399 584.3480648984549 108.7 1.0294 112.33 112.16 113.19 3.6321 0.036542 -1.1622E-05 NaN 10.074 279 126 4 NaN NaN NaN NaN 0 NaN NaN 0 43498000 + 8996 26121 5504 5509 0.10450570673765469 FRGKLFLLSS 10 Unmodified _FRGKLFLLSS_ 0 0 0 REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense REV__L1MB7_dup10821|chr9:70188904-70191101:-|1.457465048530671|0.1923701665481755|2.92|151.0|83|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 584.347866 1166.68118 0.49791 0.00029095 0.65543 0.000383 1.1533 0.00067395 584.348120295624 108.67 0.6559 112.34 112.18 112.84 3.6751 0.052034 0.00018168 NaN 10.074 178 74 4 NaN NaN NaN NaN 0 NaN NaN 0 51534000 + 8997 26121 5504 5509 0.10450570673765469 FRGPLCTI 8 Unmodified _FRGPLCTI_ 0 0 0 MCHR2|p.G102R|1|0.18|ENSG00000152034|chr6:99947850-99947850|C/T|missense_variant MCHR2|p.G102R|1|0.18|ENSG00000152034|chr6:99947850-99947850|C/T|missense_variant MCHR2|p.G102R|1|0.18|ENSG00000152034|chr6:99947850-99947850|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_3 4 453.7470397949219 2 453.746931 905.479308 -0.75557 -0.00034284 1.6059 0.00072866 0.85031 0.00038583 453.74784841230354 34.945 0.31577 38.209 38.114 38.429 3.2639 26 20 2 0 0 0 0.82752 1 6420 6420 4.3292 0.73274 1 61058 8998 15750 5505 5510 11194 11194 0.022787637165379238 FRGRPVSL 8 Unmodified _FRGRPVSL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS UPN48_class_I_Rep_3 7 466.27734375 2 466.277244 930.539935 0.19598 9.1379E-05 -0.29784 -0.00013888 -0.10187 -4.7499E-05 466.2769901468351 107.77 0.21072 111.45 111.38 111.59 3.6813 58 20 4 0 0 0 0.82752 1 25423 25423 12.532 0 1 104260000 8999 5784 5506 5511 11195 11195 0.07188617091128435 FRHFSTSGY 9 Unmodified _FRHFSTSGY_ 0 0 0 ENST00000331483.8_1_17:79801362-79801695:-|nuORF ENST00000331483.8_1_17:79801362-79801695:-|nuORF ENST00000331483.8_1_17:79801362-79801695:-|nuORF MSMS UPN46_class_I_Rep_3 1 551.2584838867188 2 551.259248 1100.50394 NaN NaN NaN NaN NaN NaN NaN 76.479 1 76.479 75.979 76.979 0 0 0 0 0.2408 1 17842 17842 13.906 3.8321 1 9000 6189 5507 5512 11196 11196 -0.0422888487637465 FRHFSTSGY 9 Unmodified _FRHFSTSGY_ 0 0 0 ENST00000331483.8_1_17:79801362-79801695:-|nuORF ENST00000331483.8_1_17:79801362-79801695:-|nuORF ENST00000331483.8_1_17:79801362-79801695:-|nuORF MSMS UPN46_class_I_Rep_3 1 551.2587890625 2 551.259248 1100.50394 NaN NaN NaN NaN NaN NaN NaN 76.519 1 76.519 76.019 77.019 0 0 0 0 0.10941 1 17854 17854 22.736 8.8302 1 9001 6189 5507 5512 11197 11197 -0.0422888487637465 FRHPYVFQ 8 Unmodified _FRHPYVFQ_ 0 0 0 L1MC5_dup10360|chr11:117069213-117069559:-|5.137876304632253|0.0158714112402632|8.34|151.0|17|1|anti-sense L1MC5_dup10360|chr11:117069213-117069559:-|5.137876304632253|0.0158714112402632|8.34|151.0|17|1|anti-sense L1MC5_dup10360|chr11:117069213-117069559:-|5.137876304632253|0.0158714112402632|8.34|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.2809448242188 2 547.282526 1092.5505 NaN NaN NaN NaN NaN NaN NaN 50.749 1 54.378 53.878 54.878 3.6285 0 0 0 0.40625 1 11155 11155 2.3027 0 1 9002 11650 5508 5513 11198 11198 0.007925997455686229 FRHVKLVL 8 Unmodified _FRHVKLVL_ 0 0 0 REV__ENSG00000133812.16,SBF2,chr11,-,I32.1,9819506,9828125|24|6.95|2|intron REV__ENSG00000133812.16,SBF2,chr11,-,I32.1,9819506,9828125|24|6.95|2|intron MULTI-SECPEP UPN48_class_I_Rep_1 5 506.7788391113281 2 506.326737 1010.63892 0.21182 0.00010725 -1.8111 -0.00091699 -1.5992 -0.00080974 506.32580605837876 92.627 0.099174 96.251 96.197 96.296 3.624 18 13 2 0 0 0 0.72333 1 22267 22267 13.508 0 1 99611 + 9003 19070 5509 5514 11199 11199 0.13402640056028758 FRHVKLVL 8 Unmodified _FRHVKLVL_ 0 0 0 REV__ENSG00000133812.16,SBF2,chr11,-,I32.1,9819506,9828125|24|6.95|2|intron REV__ENSG00000133812.16,SBF2,chr11,-,I32.1,9819506,9828125|24|6.95|2|intron MULTI-MATCH UPN48_class_I_Rep_3 7 2 506.326737 1010.63892 0.27893 0.00014123 0.06413 3.2471E-05 0.34306 0.0001737 506.3258300695843 92.338 0.026131 96.217 96.201 96.227 3.8782 -0.017349 0.0018249 NaN 13.508 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 34338 + 9004 19070 5509 5514 0.13402640056028758 FRHWCMWA 8 Unmodified _FRHWCMWA_ 0 0 0 MER115_dup1870|chr11:122732097-122732481:+|1.9618828793649532|0.0094211193698286|7.7|151.0|16|3|sense MER115_dup1870|chr11:122732097-122732481:+|1.9618828793649532|0.0094211193698286|7.7|151.0|16|3|sense MER115_dup1870|chr11:122732097-122732481:+|1.9618828793649532|0.0094211193698286|7.7|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 568.7496337890625 2 568.749482 1135.48441 NaN NaN NaN NaN NaN NaN NaN 17.631 1 21.157 20.657 21.657 3.5261 0 0 0 0.40798 1 1054 1054 0 0 1 9005 15774 5510 5515 11200 11200 -0.07791255692472987 FRHYSPPPFG 10 Unmodified _FRHYSPPPFG_ 0 0 0 ENST00000564436.5_1_16:732796-733478:-|nuORF;ENST00000568689.5_1_16:732830-733478:-|nuORF;ENST00000569441.5_1_16:732796-733478:-|nuORF;ENST00000565302.5_1_16:732919-733769:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8 ENST00000564436.5_1_16:732796-733478:-|nuORF ENST00000564436.5_1_16:732796-733478:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 603.3037719726562 2 602.79854 1203.58253 0.51769 0.00031206 -1.0254 -0.00061809 -0.50769 -0.00030603 602.797312350164 65.152 1.3524 68.631 67.984 69.336 3.4792 151 96 2 0 0 0 0.54078 1 14621 14621 6.7232 3.7279 1 668080 9006 3913 5511 5516 11201 11201 -0.01112032571313648 FRKCPRRR 8 Unmodified _FRKCPRRR_ 0 0 0 ENSG00000175699|ENST00000636493|CCDC197 ENSG00000175699|ENST00000636493|CCDC197 ENSG00000175699|ENST00000636493|CCDC197 MSMS UPN47_class_I_Rep_1 2 559.7670288085938 2 559.827443 1117.64033 NaN NaN NaN NaN NaN NaN NaN 74.345 1 77.739 77.239 78.239 3.3937 0 0 0 0.40738 1 18297 18297 0.79363 0 1 9007 4733 5512 5517 11202 11202 0.08621950873134665 FRKEEFRQKQK 11 Unmodified _FRKEEFRQKQK_ 0 0 0 REV__ENSG00000143207.21,COP1,chr1,-,I20.1,175987104,175988287|23|8.13|2|intron REV__ENSG00000143207.21,COP1,chr1,-,I20.1,175987104,175988287|23|8.13|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 508.6192321777344 3 508.619558 1522.83684 0.26559 0.00013508 -0.27111 -0.00013789 -0.0055195 -2.8073E-06 508.61938515816155 35.997 1.2308 39.507 38.967 40.198 3.5101 303 127 3 0 0 0 0.68478 1 5881 5881 0.094841 0 1 435700 + 9008 19432 5513 5518 11203 11203 0.096339894572111 FRKHYLKK 8 Unmodified _FRKHYLKK_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|59|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|59|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|59|2|sense MSMS UPN47_class_I_Rep_2 3 560.2701416015625 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 79.308 1 82.664 82.164 83.164 3.3554 0 0 0 0.40604 1 19737 19737 2.5775 0.27475 1 9009 9019 5514 5519 11204 11204 0.11669427459014514 FRKHYLKK 8 Unmodified _FRKHYLKK_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|59|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|59|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|59|2|sense MSMS UPN48_class_I_Rep_1 5 560.3407592773438 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 79.363 1 82.898 82.398 83.398 3.5352 0 0 0 0.40604 1 18941 18941 2.5775 0.27475 1 9010 9019 5514 5519 11205 11205 0.11669427459014514 FRKKSQFGS 9 Unmodified _FRKKSQFGS_ 0 0 0 REV__ERVL-E-int_dup1640|chr3:47955482-47957175:+|1.8483555604613089|0.0183298756381693|6.66|150.0|5|1|sense REV__ERVL-E-int_dup1640|chr3:47955482-47957175:+|1.8483555604613089|0.0183298756381693|6.66|150.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 542.797119140625 2 542.79854 1083.58253 NaN NaN NaN NaN NaN NaN NaN 101.46 1 101.46 100.96 101.96 0 0 0 0 0.39598 1 24753 24753 1.6526 0.17072 1 + 9011 23271 5515 5520 11206 11206 0.04407967428710435 FRKLFGGG 8 Unmodified _FRKLFGGG_ 0 0 0 L1ME3_dup8063|chr17:68118375-68119058:+|2.8402624966126515|0.2341480152054502|3.6|151.0|29|3|sense;L1ME3_dup8044|chr17:64812812-64813736:+|1.0482193151358743|0.3697137337619255|1.5|151.0|24|2|sense L1ME3_dup8063|chr17:68118375-68119058:+|2.8402624966126515|0.2341480152054502|3.6|151.0|29|3|sense L1ME3_dup8063|chr17:68118375-68119058:+|2.8402624966126515|0.2341480152054502|3.6|151.0|29|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.7994384765625 2 441.253237 880.491922 -0.20204 -8.9149E-05 2.2567 0.00099579 2.0547 0.00090664 441.2539124548755 55.543 0.14915 58.853 58.756 58.905 3.3102 13 9 2 0 0 0 0.72333 1 12616 12616 0.69038 0 1 31248 9012 12604 5516 5521 11207 11207 0.04689543171105015 FRKLFGGG 8 Unmodified _FRKLFGGG_ 0 0 0 L1ME3_dup8063|chr17:68118375-68119058:+|2.8402624966126515|0.2341480152054502|3.6|151.0|29|3|sense;L1ME3_dup8044|chr17:64812812-64813736:+|1.0482193151358743|0.3697137337619255|1.5|151.0|24|2|sense L1ME3_dup8063|chr17:68118375-68119058:+|2.8402624966126515|0.2341480152054502|3.6|151.0|29|3|sense L1ME3_dup8063|chr17:68118375-68119058:+|2.8402624966126515|0.2341480152054502|3.6|151.0|29|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 441.253237 880.491922 0.03286 1.45E-05 1.5179 0.00066979 1.5508 0.00068429 441.25367259940555 55.383 0.17227 58.891 58.824 58.996 3.5082 0.019046 -0.00027632 NaN 0.69038 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 52432 9013 12604 5516 5521 0.04689543171105015 FRKRWYLIYRQ 11 Unmodified _FRKRWYLIYRQ_ 0 0 0 REV__ENSG00000198839|ENST00000361822|ZNF277 REV__ENSG00000198839|ENST00000361822|ZNF277 MULTI-SECPEP UPN46_class_I_Rep_3 1 544.3024291992188 3 543.643927 1627.90995 -0.22966 -0.00012485 1.7759 0.00096548 1.5463 0.00084062 543.9792110501869 12.884 0.15059 12.884 12.793 12.944 0 21 14 2 0 0 0 22.551 1 210 210 0.094841 0.094841 1 46363 + 9014 21153 5517 5522 11208 11208 0.12111162970518308 FRKTLFKVTL 10 Unmodified _FRKTLFKVTL_ 0 0 0 REV__nc|ENSG00000103710|Q9NYN1-2|RASL12 REV__nc|ENSG00000103710|Q9NYN1-2|RASL12 MSMS UPN47_class_I_Rep_2 3 626.8897094726562 2 626.892441 1251.77033 NaN NaN NaN NaN NaN NaN NaN 103.98 1 107.5 107 108 3.5289 0 0 0 0.53105 1 25265 25265 3.5965 0 1 + 9015 18239 5518 5523 11209 11209 0.1545140563325731 FRKVMRKIIIN 11 Unmodified _FRKVMRKIIIN_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 473.29876708984375 3 473.298991 1416.87514 0.2486 0.00011766 0.48583 0.00022994 0.73443 0.0003476 473.2990607972802 106.85 0.040176 106.85 106.83 106.87 0 13 4 4 0 0 0 0.68024 1 26066 26066 0.50596 0.051438 1 884000 9016 12090 5519 5524 11210 11210 0.1833820383822058 FRKVMRKIIIN 11 Unmodified _FRKVMRKIIIN_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 473.29949951171875 3 473.298991 1416.87514 0.070932 3.3572E-05 0.63979 0.00030281 0.71073 0.00033639 473.29922961363104 103.08 0.40894 106.59 106.37 106.77 3.5057 90 59 2 0 0 0 0.68478 1 25300 25300 0.094841 0 1 171910 9017 12090 5519 5524 11211 11211 0.1833820383822058 FRKVMRKIIIN 11 Unmodified _FRKVMRKIIIN_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 473.298991 1416.87514 0.2486 0.00011766 0.48583 0.00022994 0.73443 0.0003476 473.2990607972802 106.85 0.040176 106.85 106.83 106.87 0 0.052907 8.5787E-05 NaN 0.50596 13 4 4 NaN NaN NaN NaN 0 NaN NaN 0 884000 9018 12090 5519 5524 0.1833820383822058 FRKVMRKIIIN 11 Unmodified _FRKVMRKIIIN_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 473.298991 1416.87514 0.23053 0.00010911 0.32251 0.00015264 0.55304 0.00026175 473.2991546060398 103.19 0.086403 106.97 106.92 107 3.7788 0.17751 -0.00014611 NaN 0.50596 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 136300 9019 12090 5519 5524 0.1833820383822058 FRKVMRKIIIN 11 Unmodified _FRKVMRKIIIN_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 473.298991 1416.87514 0.28848 0.00013654 0.42806 0.0002026 0.71654 0.00033914 473.29911248146 103.04 0.21964 106.57 106.41 106.63 3.5231 -0.23041 3.7554E-06 NaN 0.50596 44 30 2 NaN NaN NaN NaN 0 NaN NaN 0 176940 9020 12090 5519 5524 0.1833820383822058 FRLHKNNIQ 9 Unmodified _FRLHKNNIQ_ 0 0 0 L1MEd_dup17886|chr14:89604443-89605677:+|2.208005100611134|0.0129810522199805|7.41|150.0|34|2|sense L1MEd_dup17886|chr14:89604443-89605677:+|2.208005100611134|0.0129810522199805|7.41|150.0|34|2|sense L1MEd_dup17886|chr14:89604443-89605677:+|2.208005100611134|0.0129810522199805|7.41|150.0|34|2|sense MSMS UPN48_class_I_Rep_2 6 585.3320922851562 2 585.330539 1168.64652 NaN NaN NaN NaN NaN NaN NaN 71.807 1 75.357 74.857 75.857 3.5505 0 0 0 0.39518 1 16779 16779 1.8442 0 1 9021 13185 5520 5525 11212 11212 0.06894747585647565 FRLINPHSLR 10 Unmodified _FRLINPHSLR_ 0 0 0 REV__nc|ENSG00000070759|Q96S53-3|TESK2 REV__nc|ENSG00000070759|Q96S53-3|TESK2 MSMS UPN47_class_I_Rep_1 2 626.8673706054688 2 626.867289 1251.72002 NaN NaN NaN NaN NaN NaN NaN 92.133 1 95.854 95.354 96.354 3.7209 0 0 0 0.53105 1 22970 22970 2.9952 0 1 + 9022 17803 5521 5526 11213 11213 0.10423296028102413 FRLPCLCI 8 Unmodified _FRLPCLCI_ 0 0 0 REV__L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|216|1|anti-sense REV__L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|216|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.75909423828125 2 482.758984 963.503414 NaN NaN NaN NaN NaN NaN NaN 23.967 1 27.532 27.032 28.032 3.5655 0 0 0 0.40604 1 2575 2575 2.5775 0 1 + 9023 29001 5522 5527 11214 11214 0.020202808785370507 FRMKFRLEWLA 11 Unmodified _FRMKFRLEWLA_ 0 0 0 REV__THE1D_dup4248|chr5:71165090-71165456:-|2.342014487920502|0.0341799604300944|6.1|150.0|25|3|anti-sense REV__THE1D_dup4248|chr5:71165090-71165456:-|2.342014487920502|0.0341799604300944|6.1|150.0|25|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 498.9437255859375 3 499.611346 1495.81221 0.17892 8.9391E-05 1.0845 0.00054183 1.2634 0.00063122 499.6118081643929 46.024 0.15462 49.661 49.617 49.771 3.6369 14 12 2 0 0 0 22.551 1 8881 8881 0.45452 0.35968 1 74741 + 9024 32299 5523 5528 11215 11215 0.08413638050137706 FRMWEITNS 9 Unmodified _FRMWEITNS_ 0 0 0 L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 591.7627563476562 2 592.281866 1182.54918 -0.051074 -3.025E-05 -0.38545 -0.00022829 -0.43652 -0.00025854 592.281714808407 38.616 0.9277 41.857 41.509 42.437 3.2414 90 65 2 0 0 0 0.1249 1 7479 7479 1.4819 0.28856 1 118870 9025 14849 5524 5529 11216 11216 -0.0347940240551452 FRMWEITNS 9 Unmodified _FRMWEITNS_ 0 0 0 L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 592.281866 1182.54918 -0.026791 -1.5868E-05 -0.0062836 -3.7216E-06 -0.033074 -1.9589E-05 592.2818925896754 37.98 0.87906 41.645 41.313 42.192 3.6652 -0.13484 0.00015439 NaN 1.4819 140 67 3 NaN NaN NaN NaN 0 NaN NaN 0 135230 9026 14849 5524 5529 -0.0347940240551452 FRMWEITNS 9 Unmodified _FRMWEITNS_ 0 0 0 L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense L1PA7_dup5558|chr6:118838721-118840056:-|1.183231120213835|0.035255497350494|5.07|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 592.281866 1182.54918 0.045228 2.6788E-05 -0.087477 -5.1811E-05 -0.042249 -2.5024E-05 592.2817671820409 38.45 0.91046 41.838 41.44 42.351 3.3879 0.058034 5.8208E-05 NaN 1.4819 113 71 2 NaN NaN NaN NaN 0 NaN NaN 0 150130 9027 14849 5524 5529 -0.0347940240551452 FRNHLGVG 8 Unmodified _FRNHLGVG_ 0 0 0 L1MC4_dup13518|chr9:130788198-130788964:-|1.0672963741147794|0.0258804059018243|5.37|150.0|50|3|anti-sense L1MC4_dup13518|chr9:130788198-130788964:-|1.0672963741147794|0.0258804059018243|5.37|150.0|50|3|anti-sense L1MC4_dup13518|chr9:130788198-130788964:-|1.0672963741147794|0.0258804059018243|5.37|150.0|50|3|anti-sense MSMS UPN46_class_I_Rep_3 1 450.71551513671875 2 450.245944 898.477334 NaN NaN NaN NaN NaN NaN NaN 57.003 1 57.003 56.503 57.503 0 0 0 0 0.40738 1 12466 12466 0.79363 0 1 9028 11401 5525 5530 11217 11217 0.024034710229557277 FRNLRKHQ 8 Unmodified _FRNLRKHQ_ 0 0 0 ENST00000488015.5_1_7:87839874-87840006:-|nuORF ENST00000488015.5_1_7:87839874-87840006:-|nuORF ENST00000488015.5_1_7:87839874-87840006:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.817138671875 2 549.817599 1097.62064 -0.44882 -0.00024677 -1.1627 -0.00063926 -1.6115 -0.00088602 549.8169531553982 12.132 0.16836 15.508 15.425 15.593 3.3753 37 22 2 0 0 0 0.82752 1 25 25 2.3027 0.4585 1 61323 9029 7048 5526 5531 11218 11218 0.0757389813404643 FRNLYTVL 8 Unmodified _FRNLYTVL_ 0 0 0 L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|69|2|anti-sense L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|69|2|anti-sense L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|69|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2926635742188 2 513.292559 1024.57057 0.38283 0.0001965 0.0020157 1.0346E-06 0.38484 0.00019754 513.2923740952936 62.23 0.77628 65.704 65.275 66.052 3.4738 132 59 3 0 0 0 0.82752 1 13938 13938 11.64 0 1 423680 9030 9917 5527 5532 11219 11219 0.05926350685513171 FRNNLNIH 8 Unmodified _FRNNLNIH_ 0 0 0 L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|13|2|sense L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|13|2|sense L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 513.8602905273438 2 514.275232 1026.53591 NaN NaN NaN NaN NaN NaN NaN 23.031 1 23.031 22.531 23.531 0 0 0 0 0.40746 1 2825 2825 0.69038 0 1 9031 12852 5528 5533 11220 11220 0.023705275973952666 FRNRHAIG 8 Unmodified _FRNRHAIG_ 0 0 0 nc|ENSG00000140993|Q6NT04-2|TIGD7;ENSG00000140993|ENST00000396862|TIGD7 nc|ENSG00000140993|Q6NT04-2|TIGD7 nc|ENSG00000140993|Q6NT04-2|TIGD7 MSMS UPN48_class_I_Rep_1 5 485.7716369628906 2 485.770117 969.525681 NaN NaN NaN NaN NaN NaN NaN 32.745 1 36.272 35.772 36.772 3.5266 0 0 0 0.40604 1 5017 5017 2.5775 0.27475 1 9032 3200 5529 5534 11221 11221 0.03969964662849179 FRPAVLRPP 9 Unmodified _FRPAVLRPP_ 0 0 0 REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.8223876953125 2 526.821818 1051.62908 0.44626 0.0002351 0.05596 2.9481E-05 0.50222 0.00026458 526.8217583836206 108.74 0.42503 112.37 112.19 112.62 3.6355 170 42 5 0 0 0 0.41259 1 26699 26699 7.2892 7.2892 1 252580000 + 9033 17868 5530 5535 11222 11222 0.10533452050640335 FRPAVLRPP 9 Unmodified _FRPAVLRPP_ 0 0 0 REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.8218994140625 2 526.821818 1051.62908 0.44598 0.00023495 -0.13955 -7.3519E-05 0.30643 0.00016143 526.8218605311264 109.28 1.0779 112.88 112.76 113.84 3.6046 318 145 3 0 0 0 0.41259 1 26985 26985 7.2892 7.2892 1 7698800 + 9034 17868 5530 5535 11223 11223 0.10533452050640335 FRPAVLRPP 9 Unmodified _FRPAVLRPP_ 0 0 0 REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 526.8217163085938 2 526.821818 1051.62908 0.30145 0.00015881 0.13857 7.3004E-05 0.44003 0.00023181 526.8217883423441 108.73 0.57881 112.37 112.18 112.76 3.6321 264 68 5 0 0 0 0.41259 1 26382 26382 7.2892 7.2892 1 148460000 + 9035 17868 5530 5535 11224 11224 0.10533452050640335 FRPLAKTVLDL 11 Unmodified _FRPLAKTVLDL_ 0 0 0 ENSG00000143512|ENST00000343410|HHIPL2 ENSG00000143512|ENST00000343410|HHIPL2 ENSG00000143512|ENST00000343410|HHIPL2 MULTI-MSMS UPN48_class_I_Rep_1 5 636.8875732421875 2 636.887355 1271.76016 0.43352 0.0002761 0.47412 0.00030196 0.90764 0.00057806 636.8874218164299 108.66 0.57419 112.29 112.17 112.75 3.6321 165 68 3 0 0 0 0.48412 1 26331 26331 8.1555 0.54658 1 16342000 9036 3306 5531 5536 11225 11225 0.13514797908010223 FRPLAKTVLDL 11 Unmodified _FRPLAKTVLDL_ 0 0 0 ENSG00000143512|ENST00000343410|HHIPL2 ENSG00000143512|ENST00000343410|HHIPL2 ENSG00000143512|ENST00000343410|HHIPL2 MULTI-MSMS UPN48_class_I_Rep_3 7 636.8875122070312 2 636.887355 1271.76016 0.6258 0.00039856 0.62529 0.00039824 1.2511 0.0007968 636.887473438631 108.69 0.57635 112.36 112.19 112.77 3.6751 128 63 3 0 0 0 0.48412 1 25782 25782 8.1555 0.54658 1 17076000 9037 3306 5531 5536 11226 11226 0.13514797908010223 FRPLLWLIFHC 11 Unmodified _FRPLLWLIFHC_ 0 0 0 L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.2688293457031 3 482.268921 1443.78493 -0.31731 -0.00015303 0.14304 6.8981E-05 -0.17427 -8.4046E-05 482.2689280853836 29.765 1.2738 33.523 32.972 34.246 3.7578 138 93 3 0 0 0 0.68024 1 4890 4890 0.50596 0.051438 1 177830 9038 9724 5532 5537 11227 11227 0.08079154509778164 FRPLLWLIFHC 11 Unmodified _FRPLLWLIFHC_ 0 0 0 L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.2699279785156 3 482.268921 1443.78493 -0.31312 -0.00015101 0.49977 0.00024103 0.18665 9.0017E-05 482.269116928322 30.81 0.26261 34.555 34.481 34.743 3.7449 27 21 2 0 0 0 0.68024 1 5070 5070 0.50596 0 1 58148 9039 9724 5532 5537 11228 11228 0.08079154509778164 FRPLLWLIFHC 11 Unmodified _FRPLLWLIFHC_ 0 0 0 L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.2688903808594 3 482.268921 1443.78493 -0.19996 -9.6434E-05 -0.11034 -5.3212E-05 -0.3103 -0.00014965 482.26884248206846 29.98 1.2706 33.473 33.04 34.31 3.4923 147 103 2 0 0 0 0.68024 1 4928 4928 0.50596 0.09769 1 120970 9040 9724 5532 5537 11229 11229 0.08079154509778164 FRPLLYRR 8 Unmodified _FRPLLYRR_ 0 0 0 REV__MLT1K_dup7255|chr7:5311305-5311487:+|2.626755901668952|0.3958597523431848|2.73|151.0|9|2|anti-sense REV__MLT1K_dup7255|chr7:5311305-5311487:+|2.626755901668952|0.3958597523431848|2.73|151.0|9|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 560.3401489257812 2 560.840542 1119.66653 0.45867 0.00025724 0.01741 9.7642E-06 0.47608 0.000267 560.8418531868423 79.503 0.20866 83.145 83.04 83.249 3.6423 34 25 2 0 0 0 0.72333 1 18833 18833 2.5775 1.3841 1 52974 + 9041 31794 5533 5538 11230 11230 0.11148543316244286 FRPPPKWV 8 Unmodified _FRPPPKWV_ 0 0 0 REV__THE1C-int_dup1666|chr16:15962846-15963948:-|2.2883522282501296|0.012846588857205|7.48|151.0|4|1|sense REV__THE1C-int_dup1666|chr16:15962846-15963948:-|2.2883522282501296|0.012846588857205|7.48|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 513.7980346679688 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 79.512 1 83.061 82.561 83.561 3.5487 0 0 0 0.40746 1 18984 18984 0.69038 0 1 + 9042 32285 5534 5539 11231 11231 0.06930378130596182 FRPSHRLGLL 10 Unmodified _FRPSHRLGLL_ 0 0 0 ENST00000572518.1_1_16:4458221-4462552:-|nuORF ENST00000572518.1_1_16:4458221-4462552:-|nuORF ENST00000572518.1_1_16:4458221-4462552:-|nuORF MSMS UPN47_class_I_Rep_3 4 598.3580932617188 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 53.892 1 57.078 56.578 57.578 3.1856 0 0 0 0.53105 1 12192 12192 3.2813 0.78282 1 9043 7518 5535 5540 11232 11232 0.10899910999432905 FRPVLVKHHM 10 Unmodified _FRPVLVKHHM_ 0 0 0 REV__L1PA6_dup630|chr2:101455312-101460384:-|7.598321145561641|0.0476436255407038|7.32|151.0|234|2|anti-sense REV__L1PA6_dup630|chr2:101455312-101460384:-|7.598321145561641|0.0476436255407038|7.32|151.0|234|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 632.3621826171875 2 632.360785 1262.70702 0.71649 0.00045308 0.26349 0.00016662 0.97998 0.0006197 632.3607846912413 102.89 0.22466 102.89 102.79 103.02 0 44 21 3 0 0 0 0.56333 1 25108 25108 1.4819 0 1 6425500 + 9044 29947 5536 5541 11233 11233 0.08617141644390358 FRPVLVKHHM 10 Unmodified _FRPVLVKHHM_ 0 0 0 REV__L1PA6_dup630|chr2:101455312-101460384:-|7.598321145561641|0.0476436255407038|7.32|151.0|234|2|anti-sense REV__L1PA6_dup630|chr2:101455312-101460384:-|7.598321145561641|0.0476436255407038|7.32|151.0|234|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 632.360785 1262.70702 0.71649 0.00045308 0.26349 0.00016662 0.97998 0.0006197 632.3607846912413 102.89 0.22466 102.89 102.79 103.02 0 0 0 NaN 1.4819 44 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6425500 + 9045 29947 5536 5541 0.08617141644390358 FRQFLRRV 8 Unmodified _FRQFLRRV_ 0 0 0 REV__nc|ENSG00000143473|O95259-2|KCNH1 REV__nc|ENSG00000143473|O95259-2|KCNH1 MSMS UPN48_class_I_Rep_2 6 561.3402099609375 2 561.338167 1120.66178 NaN NaN NaN NaN NaN NaN NaN 79.025 1 82.658 82.158 83.158 3.6331 0 0 0 0.40625 1 18759 18759 2.3027 0 1 + 9046 19449 5537 5542 11234 11234 0.10627659173519532 FRQQIYLD 8 Unmodified _FRQQIYLD_ 0 0 0 REV__Tigger1_dup5429|chr7:11023847-11025512:+|1.1907299293539932|0.0393868108964633|4.92|151.0|7|1|sense REV__Tigger1_dup5429|chr7:11023847-11025512:+|1.1907299293539932|0.0393868108964633|4.92|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.78662109375 2 541.785099 1081.55564 0.30177 0.00016349 -0.73602 -0.00039876 -0.43425 -0.00023527 541.7851011250906 51.36 0.28951 54.954 54.757 55.047 3.5933 17 13 2 0 0 0 0.82752 1 11348 11348 2.3027 0 1 38718 + 9047 32468 5538 5543 11235 11235 0.018128588175159166 FRQRPLTI 8 Unmodified _FRQRPLTI_ 0 0 0 REV__MLT1A-int_dup276|chr9:112050795-112051340:+|2.367748798900228|0.1045046511255028|4.5|151.0|9|2|sense REV__MLT1A-int_dup276|chr9:112050795-112051340:+|2.367748798900228|0.1045046511255028|4.5|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 515.810791015625 2 515.811451 1029.60835 NaN NaN NaN NaN NaN NaN NaN 64.038 1 67.496 66.996 67.996 3.4578 0 0 0 0.39242 1 14465 14465 10.824 0 1 + 9048 31586 5539 5544 11236 11236 0.0947286167099719 FRQRSCSC 8 Unmodified _FRQRSCSC_ 0 0 0 L1M1_dup2970|chr5:69249858-69250901:-|1.0544384681215269|0.0569568001113867|4.21|151.0|40|1|anti-sense L1M1_dup2970|chr5:69249858-69250901:-|1.0544384681215269|0.0569568001113867|4.21|151.0|40|1|anti-sense L1M1_dup2970|chr5:69249858-69250901:-|1.0544384681215269|0.0569568001113867|4.21|151.0|40|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.71868896484375 2 493.718378 985.422204 NaN NaN NaN NaN NaN NaN NaN 34.513 1 38.027 37.527 38.527 3.5144 0 0 0 0.40604 1 5530 5530 2.5775 0.51773 1 9049 8541 5540 5545 11237 11237 -0.07109026831483334 FRQSVSLFL 9 Unmodified _FRQSVSLFL_ 0 0 0 L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|125|3|anti-sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|125|3|anti-sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|125|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.8109130859375 2 548.811116 1095.60768 0.51923 0.00028496 -0.33994 -0.00018656 0.17929 9.8395E-05 548.8107933962871 65.152 0.72235 68.631 68.3 69.023 3.4792 88 53 2 0 0 0 0.30034 1 14722 14722 13.906 0.86358 1 243080 9050 12152 5541 5546 11238 11238 0.0637002223129457 FRRAANRHP 9 Unmodified _FRRAANRHP_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MSMS UPN48_class_I_Rep_3 7 562.8140869140625 2 562.812848 1123.61114 NaN NaN NaN NaN NaN NaN NaN 42.489 1 46.13 45.63 46.63 3.6415 0 0 0 0.39518 1 7792 7792 1.8442 0 1 9051 740 5542 5547 11239 11239 0.0542812984849661 FRRFFRSRTWH 11 Unmodified _FRRFFRSRTWH_ 0 0 0 ENST00000371437.4_1_X:119005607-119005844:+|nuORF ENST00000371437.4_1_X:119005607-119005844:+|nuORF ENST00000371437.4_1_X:119005607-119005844:+|nuORF MSMS UPN46_class_I_Rep_3 1 532.6812133789062 3 532.620004 1594.83818 NaN NaN NaN NaN NaN NaN NaN 68.854 1 68.854 68.354 69.354 0 0 0 0 0.38417 1 15745 15745 0.094841 0 1 9052 6390 5543 5548 11240 11240 0.06455668336639064 FRRFSIYFT 9 Unmodified _FRRFSIYFT_ 0 0 0 Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|49|2|anti-sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|49|2|anti-sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_2 6 618.8325805664062 2 618.82984 1235.64513 NaN NaN NaN NaN NaN NaN NaN 45.616 1 49.374 48.874 49.874 3.7579 0 0 0 0.38784 1 8825 8825 3.5965 1.5105 1 9053 33069 5544 5549 11241 11241 0.036731134968931656 FRRGGLSD 8 Unmodified _FRRGGLSD_ 0 0 0 REV__MamRep38_dup1820|chr19:14765953-14766145:-|1.2242706407657638|0.0155477695404848|6.3|151.0|2|1|sense REV__MamRep38_dup1820|chr19:14765953-14766145:-|1.2242706407657638|0.0155477695404848|6.3|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 453.73968505859375 2 454.240858 906.467164 0.17286 7.8522E-05 1.4029 0.00063726 1.5758 0.00071578 454.24144604827876 104.84 0.056686 108.56 108.54 108.59 3.7192 9 7 2 0 0 0 0.72333 1 24746 24746 2.5775 0 1 981760 + 9054 31052 5545 5550 11242 11242 0.010188632977246925 FRRGRVLL 8 Unmodified _FRRGRVLL_ 0 0 0 REV__nc|ENSG00000134265|Q99747-2|NAPG REV__nc|ENSG00000134265|Q99747-2|NAPG MSMS UPN47_class_I_Rep_2 3 508.827880859375 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 96.491 1 99.97 99.47 100.47 3.4791 0 0 0 0.38547 1 23707 23707 13.508 0 1 + 9055 19093 5546 5551 11243 11243 0.1331227414480054 FRRGSIRFL 9 Unmodified _FRRGSIRFL_ 0 0 0 REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 576.3428344726562 2 576.343449 1150.67235 0.48792 0.00028121 -1.2322 -0.00071017 -0.74429 -0.00042897 576.3425369270811 107.87 0.35838 111.52 111.45 111.81 3.6475 32 24 3 0 0 0 0.37599 1 26450 26450 9.3831 0.63772 1 11228000 + 9056 32811 5547 5552 11244 11244 0.1030364182795438 FRRGSIRFL 9 Unmodified _FRRGSIRFL_ 0 0 0 REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 576.343449 1150.67235 0.48792 0.00028121 -1.2322 -0.00071017 -0.74429 -0.00042897 576.3425369270811 107.87 0.35838 111.52 111.45 111.81 3.6475 -0.077348 0.00029521 NaN 9.3831 32 24 3 NaN NaN NaN NaN 0 NaN NaN 0 11228000 + 9057 32811 5547 5552 0.1030364182795438 FRRGSIRFL 9 Unmodified _FRRGSIRFL_ 0 0 0 REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 576.343449 1150.67235 0.63465 0.00036578 -2.9942 -0.0017257 -2.3596 -0.0013599 576.3414665079122 108.12 0.088974 111.65 111.63 111.72 3.5333 0.057107 -0.0017358 NaN 9.3831 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1001900 + 9058 32811 5547 5552 0.1030364182795438 FRRGSIRFL 9 Unmodified _FRRGSIRFL_ 0 0 0 REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 576.343449 1150.67235 0.40262 0.00023204 -1.1228 -0.00064714 -0.72022 -0.0004151 576.3424930112293 107.88 0.39231 111.51 111.42 111.81 3.6313 -0.086043 0.00042128 NaN 9.3831 99 34 5 NaN NaN NaN NaN 0 NaN NaN 0 23796000 + 9059 32811 5547 5552 0.1030364182795438 FRRGSIRFL 9 Unmodified _FRRGSIRFL_ 0 0 0 REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense REV__Tigger7_dup523|chr3:15754094-15754585:+|1.8828674083409935|0.0480157965874566|5.29|151.0|33|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 576.343449 1150.67235 0.4784 0.00027572 -1.9715 -0.0011362 -1.4931 -0.00086052 576.3418052786511 108.01 0.080879 111.69 111.67 111.75 3.6813 0.095314 -0.00055693 NaN 9.3831 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1189000 + 9060 32811 5547 5552 0.1030364182795438 FRRLSILLKRF 11 Unmodified _FRRLSILLKRF_ 0 0 0 REV__L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|235|3|anti-sense REV__L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|235|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 483.2503967285156 3 483.645267 1447.91397 0.19106 9.2404E-05 1.7991 0.00087015 1.9902 0.00096255 483.979997221652 57.285 0.055504 57.285 57.269 57.325 0 5 3 2 0 0 0 22.551 1 12543 12543 0.45452 0.046251 1 156290 + 9061 29941 5548 5553 11245 11245 0.2079325246420467 FRRLSILLKRF 11 Unmodified _FRRLSILLKRF_ 0 0 0 REV__L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|235|3|anti-sense REV__L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|235|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.645267 1447.91397 0.14285 6.909E-05 2.4137 0.0011674 2.5565 0.0012364 483.6464150613822 54.026 0.22335 57.212 57.146 57.369 3.1856 -0.03664 7.5739E-05 NaN 0.45452 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 53681 + 9062 29941 5548 5553 0.2079325246420467 FRRRKYKN 8 Unmodified _FRRRKYKN_ 0 0 0 REV__ENST00000587537.5_1_19:45480680-45489871:+|nuORF REV__ENST00000587537.5_1_19:45480680-45489871:+|nuORF MSMS UPN46_class_I_Rep_3 1 584.3480224609375 2 584.346523 1166.67849 NaN NaN NaN NaN NaN NaN NaN 36.373 1 36.373 35.873 36.873 0 0 0 0 0.40746 1 6736 6736 0.69038 0.088878 1 + 9063 18267 5549 5554 11246 11246 0.10182160059480339 FRRRMLLLVTK 11 Unmodified _FRRRMLLLVTK_ 0 0 0 REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.30291748046875 3 478.302624 1431.88604 0.20727 9.914E-05 0.12493 5.9753E-05 0.3322 0.00015889 478.3025998673249 65.356 1.4379 68.811 68.288 69.726 3.4541 158 104 2 0 0 0 0.67356 1 14964 14964 1.1098 0.70149 1 1143100 + 9064 32457 5550 5555 11247 11247 0.18737606212471292 FRRRMLLLVTK 11 Unmodified _FRRRMLLLVTK_ 0 0 0 REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.30242919921875 3 478.302624 1431.88604 0.19337 9.249E-05 0.21041 0.00010064 0.40378 0.00019313 478.6371473459511 66.311 0.8223 69.763 69.554 70.376 3.4516 83 54 3 0 0 0 0.67356 1 15159 15159 1.1098 0.65524 1 295490 + 9065 32457 5550 5555 11248 11248 0.18737606212471292 FRRRMLLLVTK 11 Unmodified _FRRRMLLLVTK_ 0 0 0 REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.3020324707031 3 478.302624 1431.88604 0.25838 0.00012358 -0.0078477 -3.7536E-06 0.25053 0.00011983 478.63701957965213 65.868 0.51582 69.376 69.225 69.741 3.5077 74 36 3 0 0 0 0.67356 1 15008 15008 1.1098 0.65524 1 201260 + 9066 32457 5550 5555 11249 11249 0.18737606212471292 FRRRMLLLVTK 11 Unmodified _FRRRMLLLVTK_ 0 0 0 REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense REV__Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.97076416015625 3 478.302624 1431.88604 0.26211 0.00012537 0.24481 0.0001171 0.50692 0.00024246 478.6371444094434 66.401 0.34868 69.908 69.741 70.089 3.5077 57 28 3 0 0 0 0.68132 1 15098 15098 0.40827 0 1 142340 + 9067 32457 5550 5555 11250 11250 0.18737606212471292 FRRRRDPL 8 Unmodified _FRRRRDPL_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MSMS UPN47_class_I_Rep_1 2 558.3297729492188 2 558.330873 1114.64719 NaN NaN NaN NaN NaN NaN NaN 36.818 1 40.488 39.988 40.988 3.6692 0 0 0 0.40746 1 6916 6916 0.69038 0.088878 1 + 9068 18829 5551 5556 11251 11251 0.09445587025379609 FRRRRSRNRRQ 11 Unmodified _FRRRRSRNRRQ_ 0 0 0 REV__ENST00000481383.1_1_3:180688091-180688984:+|nuORF REV__ENST00000481383.1_1_3:180688091-180688984:+|nuORF MSMS UPN48_class_I_Rep_3 7 529.810302734375 3 529.980706 1586.92029 NaN NaN NaN NaN NaN NaN NaN 107.34 1 111.02 110.52 111.52 3.6813 0 0 0 0.38417 1 25308 25308 0 0 1 + 9069 22567 5552 5557 11252 11252 0.15030583468296754 FRRRRWRRKMA 11 Unmodified _FRRRRWRRKMA_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MSMS UPN48_class_I_Rep_1 5 540.3196411132812 3 540.319783 1617.93752 0.37601 0.00020316 0.54009 0.00029182 0.91609 0.00049498 540.3194941267755 99.951 0.46391 103.56 103.4 103.87 3.6065 75 55 2 0 0 0 0.68491 2 24142 24142;24165 0.08335 0.08335 1 327910 9070 3067 5553 5558 11253;11254 11253 0.15326787749722826 FRRRRWRRKMA 11 Unmodified _FRRRRWRRKMA_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-SECPEP UPN48_class_I_Rep_1 5 539.9851684570312 3 540.319783 1617.93752 0.37597 0.00020314 -0.19906 -0.00010756 0.1769 9.5584E-05 540.3192501871275 100.29 0.22231 103.9 103.82 104.05 3.6084 50 29 2 0 0 0 22.551 1 24208 24208 0 0 1 171570 9071 3067 5553 5558 11255 11255 0.15326787749722826 FRRRRWRRKMA 11 Unmodified _FRRRRWRRKMA_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-SECPEP UPN48_class_I_Rep_2 6 539.985107421875 3 540.319783 1617.93752 0.47393 0.00025608 -0.34281 -0.00018523 0.13112 7.0848E-05 540.3198098105321 99.282 0.18372 103.04 102.88 103.06 3.7575 34 26 2 0 0 0 22.551 1 23562 23562 0.08335 0.08335 1 193510 9072 3067 5553 5558 11256 11256 0.15326787749722826 FRRRRWRRKMA 11 Unmodified _FRRRRWRRKMA_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MATCH UPN46_class_I_Rep_3 1 3 540.319783 1617.93752 0.36332 0.00019631 -0.098399 -5.3167E-05 0.26492 0.00014314 540.3198249138995 103.64 0.034286 103.64 103.63 103.66 0 -0.12997 5.9295E-05 NaN 0 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 71807 9073 3067 5553 5558 0.15326787749722826 FRRRRWRRKMA 11 Unmodified _FRRRRWRRKMA_ 0 0 0 nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MATCH UPN48_class_I_Rep_2 6 3 540.319783 1617.93752 0.47385 0.00025603 0.71972 0.00038888 1.1936 0.00064491 540.3197715489446 99.882 0.22813 103.64 103.58 103.81 3.7575 0.040849 0.00020117 NaN 0.08335 37 30 2 NaN NaN NaN NaN 0 NaN NaN 0 154300 9074 3067 5553 5558 0.15326787749722826 FRRRSYLVV 9 Unmodified _FRRRSYLVV_ 0 0 0 ENSG00000197385|ENST00000360311|ZNF860 ENSG00000197385|ENST00000360311|ZNF860 ENSG00000197385|ENST00000360311|ZNF860 MULTI-MSMS UPN47_class_I_Rep_2 3 598.8598022460938 2 598.356557 1194.69856 0.51636 0.00030897 1.787 0.0010693 2.3034 0.0013782 598.3573745660327 53.138 0.45111 56.465 56.228 56.679 3.3266 45 25 2 0 0 0 0.46869 1 11865 11865 3.9444 1.6417 1 67981 9075 5367 5554 5559 11257 11257 0.10899910999410167 FRRSQRRNIPR 11 Unmodified _FRRSQRRNIPR_ 0 0 0 REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 495.9588317871094 3 495.958908 1484.85489 0.17416 8.6378E-05 0.049298 2.445E-05 0.22346 0.00011083 495.9587665148714 107.2 0.25571 110.83 110.64 110.89 3.6299 83 30 4 0 0 0 0.68081 1 25811 25811 0.45452 0 1 692070 + 9076 22311 5555 5560 11258 11258 0.13186169222603894 FRRSQRRNIPR 11 Unmodified _FRRSQRRNIPR_ 0 0 0 REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 495.95916748046875 3 495.958908 1484.85489 0.27868 0.00013821 0.034266 1.6994E-05 0.31294 0.00015521 495.95891576699205 96.345 0.48575 100.13 99.949 100.44 3.7804 73 62 2 0 0 0 0.68132 1 22872 22872 0.40827 0.31342 1 321120 + 9077 22311 5555 5560 11259 11259 0.13186169222603894 FRRWGLRW 8 Unmodified _FRRWGLRW_ 0 0 0 REV__ENST00000392391.7_3_3:196439305-196443731:+|nuORF REV__ENST00000392391.7_3_3:196439305-196443731:+|nuORF MSMS UPN47_class_I_Rep_1 2 588.8309936523438 2 588.830509 1175.64647 NaN NaN NaN NaN NaN NaN NaN 67.31 1 70.671 70.171 71.171 3.3611 0 0 0 0.40746 1 16179 16179 0.69038 0.088878 1 + 9078 22090 5556 5561 11260 11260 0.06566792376315789 FRSAQTFFVE 10 Unmodified _FRSAQTFFVE_ 0 0 0 HERVIP10FH-int_dup16|chr1:159022896-159025513:-|1.594211535841337|0.2148392988454364|2.89|151.0|174|3|anti-sense HERVIP10FH-int_dup16|chr1:159022896-159025513:-|1.594211535841337|0.2148392988454364|2.89|151.0|174|3|anti-sense HERVIP10FH-int_dup16|chr1:159022896-159025513:-|1.594211535841337|0.2148392988454364|2.89|151.0|174|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 616.3092651367188 2 616.308938 1230.60332 0.4924 0.00030347 0.16448 0.00010137 0.65688 0.00040484 616.3087574681716 57.158 0.68824 60.701 60.301 60.989 3.5427 147 68 3 0 0 0 0.52562 1 12251 12251 8.7454 0 1 266970 9079 8217 5557 5562 11261 11261 -0.0027548698228656576 FRSKVNNYF 9 Unmodified _FRSKVNNYF_ 0 0 0 REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP MULTI-MSMS UPN48_class_I_Rep_1 5 587.8040771484375 2 587.803823 1173.59309 0.41928 0.00024646 0.26827 0.00015769 0.68756 0.00040415 587.8039232327768 43.519 1.3731 47.029 46.637 48.01 3.5103 240 108 3 0 0 0 0.17897 4 8171 8171;8206;8243;8282 22.736 4.5899 1 796830 + 9080 20344 5558 5563 11262;11263;11264;11265 11262 0.013239500831332407 FRSKVNNYF 9 Unmodified _FRSKVNNYF_ 0 0 0 REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP MULTI-MSMS UPN48_class_I_Rep_2 6 587.8043823242188 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.097406 2 8039 8039;8156 34.402 13.987 1 966840 + 9081 20344 5558 5563 11266;11267 11266 0.013239500831332407 FRSPFQSPFV 10 Unmodified _FRSPFQSPFV_ 0 0 0 REV__THE1D-int_dup1999|chr13:32373536-32374878:-|1.8616751051864333|0.0841541111726374|4.47|151.0|54|2|anti-sense REV__THE1D-int_dup1999|chr13:32373536-32374878:-|1.8616751051864333|0.0841541111726374|4.47|151.0|54|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.315185546875 2 606.314023 1210.61349 0.60348 0.0003659 -0.15581 -9.4467E-05 0.44768 0.00027143 606.3139289146931 56.284 0.60762 59.817 59.489 60.097 3.5333 89 50 2 0 0 0 0.56118 1 12117 12117 2.9952 0 1 166510 + 9082 32307 5559 5564 11268 11268 0.016611207429377828 FRSPLSWFY 9 Unmodified _FRSPLSWFY_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MSMS UPN48_class_I_Rep_3 7 601.8047485351562 2 601.803291 1201.59203 NaN NaN NaN NaN NaN NaN NaN 33.717 1 37.397 36.897 37.897 3.6797 0 0 0 0.39428 1 5278 5278 2.0598 0 1 + 9083 19418 5560 5565 11269 11269 -0.0007026428577319166 FRTRLSRFL 9 Unmodified _FRTRLSRFL_ 0 0 0 REV__L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|180|1|anti-sense REV__L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|180|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.3583984375 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 52.301 1 55.634 55.134 56.134 3.3332 0 0 0 0.38784 1 11658 11658 3.5965 0 1 + 9084 29109 5561 5566 11270 11270 0.10899910999432905 FRVCGRNK 8 Unmodified _FRVCGRNK_ 0 0 0 MSTA-int_dup854|chr4:168380654-168381319:+|1.7451236518789943|0.2848679944622504|2.61|150.0|13|2|sense MSTA-int_dup854|chr4:168380654-168381319:+|1.7451236518789943|0.2848679944622504|2.61|150.0|13|2|sense MSTA-int_dup854|chr4:168380654-168381319:+|1.7451236518789943|0.2848679944622504|2.61|150.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 490.2657775878906 2 490.266353 978.518153 NaN NaN NaN NaN NaN NaN NaN 78.76 1 82.295 81.795 82.795 3.5352 0 0 0 0.40625 1 18779 18779 2.3027 0.24298 1 9085 16563 5562 5567 11271 11271 0.02803489070925025 FRVESSVDVY 10 Unmodified _FRVESSVDVY_ 0 0 0 L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|221|1|anti-sense;L1PA6_dup4702|chr12:47674234-47679408:+|3.42160626153214|0.3741802570707959|3.19|150.0|245|2|anti-sense;L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|88|1|anti-sense;L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|345|3|anti-sense;L1PA5_dup9087|chr13:109441493-109445948:-|1.5678993567053352|0.0209782001132637|6.22|145.0|171|1|anti-sense;L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|221|1|anti-sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|273|2|anti-sense;L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|341|3|anti-sense;L1PA3_dup3723|chr5:119294045-119300263:-|5.738578586122925|0.0558010729143642|6.68|151.0|353|3|anti-sense;L1PA2_dup4620|chr17:61110230-61116238:+|3.9396358515013454|0.1650750810842491|4.58|151.0|281|2|anti-sense L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|221|1|anti-sense L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|221|1|anti-sense MSMS UPN46_class_I_Rep_3 1 600.79638671875 2 600.798403 1199.58225 NaN NaN NaN NaN NaN NaN NaN 80.897 1 80.897 80.397 81.397 0 0 0 0 0.53105 1 19079 19079 1.4819 0.28856 1 9086 14214 5563 5568 11272 11272 -0.00955497081804424 FRVFRVLY 8 Unmodified _FRVFRVLY_ 0 0 0 ENSG00000132359.15,RAP1GAP2,chr17,+,I14.1,2985067,2991296|33|12.58|1|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I14.1,2985067,2991296|33|12.58|1|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I14.1,2985067,2991296|33|12.58|1|intron MSMS UPN47_class_I_Rep_1 2 550.3251953125 2 550.324194 1098.63383 NaN NaN NaN NaN NaN NaN NaN 64.477 1 67.832 67.332 68.332 3.3557 0 0 0 0.40746 1 15321 15321 0.69038 0 1 9087 2746 5564 5569 11273 11273 0.08846336193414572 FRVFVWFP 8 Unmodified _FRVFVWFP_ 0 0 0 L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|91|1|anti-sense L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|91|1|anti-sense L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|91|1|anti-sense MSMS UPN48_class_I_Rep_3 7 549.300537109375 2 549.300188 1096.58582 NaN NaN NaN NaN NaN NaN NaN 98.198 1 102.1 101.6 102.6 3.9022 0 0 0 0.40738 1 23270 23270 0.79363 0 1 9088 8590 5565 5570 11274 11274 0.041392622733837925 FRVLKGLY 8 Unmodified _FRVLKGLY_ 0 0 0 REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF MSMS UPN48_class_I_Rep_2 6 498.2925720214844 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 52.504 1 56.144 55.644 56.644 3.639 0 0 0 0.40604 1 10913 10913 2.5775 0 1 + 9089 19095 5566 5571 11275 11275 0.09887244927813299 FRVLKGLY 8 Unmodified _FRVLKGLY_ 0 0 0 REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF REV__ENST00000489749.1_1_2:7018228-7023923:+|nuORF MSMS UPN48_class_I_Rep_3 7 498.29254150390625 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 52.565 1 56.163 55.663 56.663 3.5979 0 0 0 0.40604 1 10868 10868 2.5775 0 1 + 9090 19095 5566 5571 11276 11276 0.09887244927813299 FRVWTLYSLKL 11 Unmodified _FRVWTLYSLKL_ 0 0 0 REV__ENSG00000099960|ENST00000382932|SLC7A4 REV__ENSG00000099960|ENST00000382932|SLC7A4 MULTI-SECPEP UPN48_class_I_Rep_3 7 475.79962158203125 3 475.946612 1424.81801 0.17706 8.4269E-05 -0.59637 -0.00028384 -0.41931 -0.00019957 475.9468504098157 59.315 0.39516 62.838 62.459 62.854 3.5231 32 24 2 0 0 0 22.551 1 12827 12827 4.1166 0.79699 1 116160 + 9091 18080 5567 5572 11277 11277 0.12259059833445463 FRWCFGLRKF 10 Unmodified _FRWCFGLRKF_ 0 0 0 REV__L1MDa_dup5135|chr12:79852496-79853475:-|1.837497109344825|0.0477140210471958|5.27|151.0|69|3|anti-sense REV__L1MDa_dup5135|chr12:79852496-79853475:-|1.837497109344825|0.0477140210471958|5.27|151.0|69|3|anti-sense MSMS UPN46_class_I_Rep_3 1 453.9100341796875 3 453.909615 1358.70702 NaN NaN NaN NaN NaN NaN NaN 13.053 1 13.053 12.553 13.553 0 0 0 0 0.53105 1 285 285 0.15932 0 1 + 9092 27533 5568 5573 11278 11278 0.042011416443529015 FRWDRKCR 8 Unmodified _FRWDRKCR_ 0 0 0 Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|5|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|5|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 583.80517578125 2 583.803634 1165.59272 NaN NaN NaN NaN NaN NaN NaN 34.877 1 38.563 38.063 39.063 3.6859 0 0 0 0.40746 1 6331 6331 0.69038 0.088878 1 9093 33391 5569 5574 11279 11279 0.01654251882268909 FRWKWTEF 8 Unmodified _FRWKWTEF_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-2|CLCC1 REV__nc|ENSG00000121940|Q96S66-2|CLCC1 MSMS UPN48_class_I_Rep_3 7 600.3026123046875 2 600.303458 1198.59236 NaN NaN NaN NaN NaN NaN NaN 31.052 1 34.767 34.267 35.267 3.7146 0 0 0 0.40746 1 4547 4547 0.69038 0.088878 1 + 9094 18736 5570 5575 11280 11280 0.001011554340720977 FRWRRRLLVI 10 Unmodified _FRWRRRLLVI_ 0 0 0 ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80 ENSG00000091986|ENST00000206423|CCDC80 ENSG00000091986|ENST00000206423|CCDC80 MSMS UPN48_class_I_Rep_2 6 472.3030700683594 3 472.301724 1413.88334 NaN NaN NaN NaN NaN NaN NaN 63.795 1 67.269 66.769 67.769 3.4743 0 0 0 0.53105 1 14373 14373 0.15932 0.064481 1 9095 1382 5571 5576 11281 11281 0.1929551886983063 FRYERQQQQK 10 Unmodified _FRYERQQQQK_ 0 0 0 REV__ENSG00000116138|ENST00000375847|DNAJC16 REV__ENSG00000116138|ENST00000375847|DNAJC16 MULTI-SECPEP UPN47_class_I_Rep_1 2 471.3283386230469 3 470.912742 1409.7164 -0.39272 -0.00018493 -0.38394 -0.0001808 -0.77666 -0.00036574 470.9126250984603 15.972 0.45573 19.469 19.281 19.737 3.4968 81 55 2 0 0 0 0.84575 1 982 982 0.15932 0 1 52342 + 9096 18598 5572 5577 11282 11282 0.027925814636091673 FRYSVNRF 8 Unmodified _FRYSVNRF_ 0 0 0 REV__L1MC5a_dup6574|chr6:106535315-106535757:-|1.1096033714822895|0.0662030985025971|4.07|150.0|27|1|anti-sense REV__L1MC5a_dup6574|chr6:106535315-106535757:-|1.1096033714822895|0.0662030985025971|4.07|150.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 544.7537231445312 2 544.785433 1087.55631 NaN NaN NaN NaN NaN NaN NaN 22.327 1 25.677 25.177 26.177 3.3496 0 0 0 0.40643 1 2653 2653 2.0598 1.2661 1 + 9097 27171 5573 5578 11283 11283 0.016036982572359193 FRYVSLLY 8 Unmodified _FRYVSLLY_ 0 0 0 REV__L1MC1_dup758|chr1:186952395-186953533:-|1.243304852705674|0.1545402371705282|3.01|150.0|82|3|anti-sense REV__L1MC1_dup758|chr1:186952395-186953533:-|1.243304852705674|0.1545402371705282|3.01|150.0|82|3|anti-sense MSMS UPN48_class_I_Rep_1 5 530.793212890625 2 530.794935 1059.57532 NaN NaN NaN NaN NaN NaN NaN 39.468 1 42.973 42.473 43.473 3.5048 0 0 0 0.40404 1 6973 6973 5.2307 1.2863 1 + 9098 26599 5574 5579 11284 11284 0.047912348282807216 FRYWVQKF 8 Unmodified _FRYWVQKF_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|145|3|anti-sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|145|3|anti-sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|145|3|anti-sense MSMS UPN47_class_I_Rep_1 2 587.3120727539062 2 587.313826 1172.6131 NaN NaN NaN NaN NaN NaN NaN 25.541 1 29.29 28.79 29.79 3.7495 0 0 0 0.40746 1 3520 3520 0.69038 0.088878 1 9099 11514 5575 5580 11285 11285 0.03369745813733971 FRYYYFFH 8 Unmodified _FRYYYFFH_ 0 0 0 L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|95|1|anti-sense L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|95|1|anti-sense L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|95|1|anti-sense MSMS UPN48_class_I_Rep_2 6 621.790771484375 2 621.790184 1241.56581 NaN NaN NaN NaN NaN NaN NaN 67.936 1 71.444 70.944 71.944 3.5083 0 0 0 0.40746 1 15635 15635 0.69038 0 1 9100 10117 5576 5581 11286 11286 -0.04530533457250385 FSAAFRSSFR 10 Unmodified _FSAAFRSSFR_ 0 0 0 L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|127|3|anti-sense L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|127|3|anti-sense L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|127|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 588.8025512695312 2 588.301447 1174.58834 0.45008 0.00026478 -0.59307 -0.0003489 -0.14299 -8.4121E-05 588.3010185251127 37.011 0.32284 40.714 40.614 40.937 3.7021 46 34 2 0 0 0 0.53794 1 6303 6303 7.1017 1.3699 1 129320 9101 14392 5577 5582 11287 11287 0.008030659403857499 FSADLRRVL 9 Unmodified _FSADLRRVL_ 0 0 0 REV__nc|ENSG00000115705|P07202-6|TPO REV__nc|ENSG00000115705|P07202-6|TPO MULTI-MSMS UPN48_class_I_Rep_3 7 538.8142700195312 2 538.81419 1075.61383 0.44478 0.00023965 -0.10636 -5.731E-05 0.33841 0.00018234 538.8140628949074 55.517 0.84217 59.073 58.575 59.418 3.5554 99 51 3 0 0 0 0.41259 1 11738 11738 7.2892 0.56607 1 419310 + 9102 18577 5578 5583 11288 11288 0.07904540462777732 FSAPPLFY 8 Unmodified _FSAPPLFY_ 0 0 0 REV__L1PA5_dup10585|chr18:35627589-35633705:+|3.3947256058926363|0.1144986184932583|4.89|151.0|327|3|anti-sense REV__L1PA5_dup10585|chr18:35627589-35633705:+|3.3947256058926363|0.1144986184932583|4.89|151.0|327|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 471.77349853515625 2 471.242004 940.469455 0.26628 0.00012548 1.1838 0.00055786 1.4501 0.00068334 471.24247279326755 109.08 0.14598 112.61 112.5 112.65 3.5307 24 17 2 0 0 0 0.72333 1 26528 26528 0.6015 0.6015 1 3198600 + 9103 29483 5579 5584 11289 11289 -0.003161010171993439 FSAPPLFY 8 Unmodified _FSAPPLFY_ 0 0 0 REV__L1PA5_dup10585|chr18:35627589-35633705:+|3.3947256058926363|0.1144986184932583|4.89|151.0|327|3|anti-sense REV__L1PA5_dup10585|chr18:35627589-35633705:+|3.3947256058926363|0.1144986184932583|4.89|151.0|327|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 471.242004 940.469455 0.082452 3.8855E-05 1.4428 0.00067989 1.5252 0.00071874 471.24267113319075 108.84 0.37897 112.47 112.37 112.75 3.6321 -0.085902 9.2207E-05 NaN 0.6015 64 44 2 NaN NaN NaN NaN 0 NaN NaN 0 3246200 + 9104 29483 5579 5584 -0.003161010171993439 FSAPPLFY 8 Unmodified _FSAPPLFY_ 0 0 0 REV__L1PA5_dup10585|chr18:35627589-35633705:+|3.3947256058926363|0.1144986184932583|4.89|151.0|327|3|anti-sense REV__L1PA5_dup10585|chr18:35627589-35633705:+|3.3947256058926363|0.1144986184932583|4.89|151.0|327|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 471.242004 940.469455 0.20957 9.8759E-05 1.2306 0.00057992 1.4402 0.00067868 471.24247058001254 108.91 0.10763 112.59 112.51 112.62 3.6746 0.032747 -0.00010773 NaN 0.6015 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2124500 + 9105 29483 5579 5584 -0.003161010171993439 FSCLRFGPR 9 Unmodified _FSCLRFGPR_ 0 0 0 REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|46|2|anti-sense REV__L1MEd_dup21029|chr22:19373261-19374045:-|1.5340008450453422|0.0334960114143667|5.52|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_2 3 541.7816162109375 2 541.781836 1081.54912 NaN NaN NaN NaN NaN NaN NaN 62.146 1 65.406 64.906 65.906 3.2594 0 0 0 0.31276 1 14656 14656 10.074 0 1 + 9106 28564 5580 5585 11290 11290 0.011606423851617365 FSCTVGNHVFP 11 Unmodified _FSCTVGNHVFP_ 0 0 0 MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|19|1|sense;MER66-int_dup1|chr1:149683678-149685807:-|3.5901664453604702|0.4173679766776176|3.1|150.0|17|1|sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|19|1|sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|19|1|sense MSMS UPN48_class_I_Rep_3 7 604.2840576171875 2 604.281866 1206.54918 NaN NaN NaN NaN NaN NaN NaN 40.459 1 44.11 43.61 44.61 3.6509 0 0 0 0.38417 1 7197 7197 3.2813 1.2216 1 9107 16177 5581 5586 11291 11291 -0.04583402405501147 FSCYCSCYKC 10 Unmodified _FSCYCSCYKC_ 0 0 0 REV__L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|53|3|anti-sense REV__L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|53|3|anti-sense MSMS UPN48_class_I_Rep_3 7 603.7106323242188 2 603.707973 1205.40139 NaN NaN NaN NaN NaN NaN NaN 115.56 1 119.2 118.7 119.7 3.6433 0 0 0 0.53105 1 27500 27500 1.3295 0.72803 1 + 9108 24888 5582 5587 11292 11292 -0.19309121317678546 FSDEGRLRK 9 Unmodified _FSDEGRLRK_ 0 0 0 ENSG00000198081|ENST00000651870|ZBTB14 ENSG00000198081|ENST00000651870|ZBTB14 ENSG00000198081|ENST00000651870|ZBTB14 MSMS UPN47_class_I_Rep_2 3 554.2724609375 2 554.298904 1106.58326 NaN NaN NaN NaN NaN NaN NaN 66.451 1 69.71 69.21 70.21 3.2588 0 0 0 0.39518 1 15966 15966 1.8442 0.36234 1 9109 5408 5583 5588 11293 11293 0.0342276207775285 FSDGLAHLDNL 11 Unmodified _FSDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 601.2962036132812 2 601.296027 1200.5775 0.57567 0.00034615 -0.11095 -6.6713E-05 0.46472 0.00027943 601.2958417118448 60.237 0.59566 63.711 63.292 63.888 3.4737 93 43 3 0 0 0 0.32383 2 13304 13226;13304 29.437 12.324 1 290020 + 9110 5729 5584 5589 11294;11295 11295 -0.014763812245746522 FSDGLAHLDNL 11 Unmodified _FSDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 601.797607421875 2 601.296027 1200.5775 0.51939 0.00031231 0.12474 7.5006E-05 0.64413 0.00038731 601.2959446718316 59.886 0.59144 63.403 63.2 63.791 3.5169 111 50 3 0 0 0 0.31653 2 13161 13096;13161 24.957 16.802 1 327290 + 9111 5729 5584 5589 11296;11297 11297 -0.014763812245746522 FSDGLAHLDNL 11 Unmodified _FSDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_3 7 601.2965087890625 2 601.296027 1200.5775 NaN NaN NaN NaN NaN NaN NaN 59.709 1 63.226 62.726 63.726 3.5169 0 0 0 0.30112 1 13055 13055 12.175 2.7916 1 + 9112 5729 5584 5589 11298 11298 -0.014763812245746522 FSDHGSLWV 9 Unmodified _FSDHGSLWV_ 0 0 0 MER44A_dup1642|chr11:85973330-85973664:+|1.8090314084033128|0.0773548448116176|4.55|150.0|15|1|anti-sense MER44A_dup1642|chr11:85973330-85973664:+|1.8090314084033128|0.0773548448116176|4.55|150.0|15|1|anti-sense MER44A_dup1642|chr11:85973330-85973664:+|1.8090314084033128|0.0773548448116176|4.55|150.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.2481079101562 2 524.248349 1046.48214 0.4312 0.00022606 -0.1662 -8.7128E-05 0.265 0.00013893 524.2481402437483 51.657 0.58778 54.866 54.639 55.227 3.2086 48 30 2 0 0 0 0.26948 1 11565 11565 15.847 1.0089 1 122740 9113 15977 5585 5590 11299 11299 -0.0392368962495766 FSDISCTWG 9 Unmodified _FSDISCTWG_ 0 0 0 L1MEc_dup8696|chr7:151362591-151363715:+|1.291493543897876|0.2759057917237859|2.23|151.0|55|2|anti-sense L1MEc_dup8696|chr7:151362591-151363715:+|1.291493543897876|0.2759057917237859|2.23|151.0|55|2|anti-sense L1MEc_dup8696|chr7:151362591-151363715:+|1.291493543897876|0.2759057917237859|2.23|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_1 5 508.2378845214844 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 92.341 1 95.967 95.467 96.467 3.626 0 0 0 0.38478 1 22190 22190 4.3292 1.7518 1 9114 13147 5586 5591 11300 11300 -0.09494731004940604 FSDISCTWG 9 Unmodified _FSDISCTWG_ 0 0 0 L1MEc_dup8696|chr7:151362591-151363715:+|1.291493543897876|0.2759057917237859|2.23|151.0|55|2|anti-sense L1MEc_dup8696|chr7:151362591-151363715:+|1.291493543897876|0.2759057917237859|2.23|151.0|55|2|anti-sense L1MEc_dup8696|chr7:151362591-151363715:+|1.291493543897876|0.2759057917237859|2.23|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_2 6 508.21209716796875 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 98.736 1 102.51 102.01 103.01 3.7707 0 0 0 0.38478 1 23454 23454 4.3292 1.7518 1 9115 13147 5586 5591 11301 11301 -0.09494731004940604 FSDLVAEKF 9 Unmodified _FSDLVAEKF_ 0 0 0 nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2 nc|ENSG00000142173|P12110-3|COL6A2 nc|ENSG00000142173|P12110-3|COL6A2 MSMS UPN47_class_I_Rep_2 3 528.2745361328125 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 86.57 1 90.011 89.511 90.511 3.4407 0 0 0 0.22485 1 21533 21533 14.838 0 1 9116 3239 5587 5592 11302 11302 0.008426343491009902 FSDLVAEKF 9 Unmodified _FSDLVAEKF_ 0 0 0 nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2 nc|ENSG00000142173|P12110-3|COL6A2 nc|ENSG00000142173|P12110-3|COL6A2 MSMS UPN47_class_I_Rep_2 3 528.2740478515625 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 86.689 1 90.13 89.63 90.63 3.4407 0 0 0 0.10941 1 21559 21559 22.736 3.4793 1 9117 3239 5587 5592 11303 11303 0.008426343491009902 FSDLVAEKF 9 Unmodified _FSDLVAEKF_ 0 0 0 nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2;ENSG00000142173|ENST00000300527|COL6A2 nc|ENSG00000142173|P12110-3|COL6A2 nc|ENSG00000142173|P12110-3|COL6A2 MULTI-MSMS UPN47_class_I_Rep_3 4 528.27392578125 2 528.274032 1054.53351 0.41141 0.00021734 -0.17814 -9.4107E-05 0.23327 0.00012323 528.2738627431997 86.482 0.2213 89.862 89.757 89.978 3.3801 50 28 3 0 0 0 0.15122 1 21696 21696 25.399 0 1 211280 9118 3239 5587 5592 11304 11304 0.008426343491009902 FSDLYNEVY 9 Unmodified _FSDLYNEVY_ 0 0 0 nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX nc|ENSG00000088826|Q9NWM0-2|SMOX nc|ENSG00000088826|Q9NWM0-2|SMOX MULTI-SECPEP UPN47_class_I_Rep_2 3 575.2906494140625 2 575.258579 1148.50261 0.39954 0.00022984 0.19958 0.00011481 0.59913 0.00034465 575.2585502076267 64.239 0.26741 67.495 67.335 67.603 3.2556 26 21 2 0 0 0 0.12251 1 15293 15293 5.2969 2.9942 1 55891 9119 1316 5588 5593 11305 11305 -0.0657056375580396 FSDPGLLTALY 11 Unmodified _FSDPGLLTALY_ 0 0 0 ENSG00000163154|ENST00000368910|TNFAIP8L2 ENSG00000163154|ENST00000368910|TNFAIP8L2 ENSG00000163154|ENST00000368910|TNFAIP8L2 MULTI-MSMS UPN47_class_I_Rep_3 4 598.8136596679688 2 598.813522 1195.61249 0.48759 0.00029198 0.34316 0.00020549 0.83075 0.00049746 598.8136269173133 85.703 0.3222 89.075 88.866 89.188 3.3716 49 40 2 0 0 0 0.32745 1 21460 21460 28.495 17 1 123270 9120 3985 5589 5594 11306 11306 0.02250861583365804 FSDQRLYDF 9 Unmodified _FSDQRLYDF_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 595.7772827148438 2 595.77747 1189.54039 0.54223 0.00032305 -0.2002 -0.00011927 0.34204 0.00020378 595.7773418111929 58.614 0.62664 62.101 61.893 62.519 3.487 67 41 2 0 0 0 0.30034 1 12846 12846 13.906 3.0821 1 151440 9121 11143 5590 5595 11307 11307 -0.046800527703453554 FSDQRLYDF 9 Unmodified _FSDQRLYDF_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 595.7776489257812 2 595.77747 1189.54039 0.57375 0.00034183 -0.18451 -0.00010993 0.38924 0.0002319 595.7772957018916 58.712 0.63173 62.211 61.83 62.462 3.4987 59 37 2 0 0 0 0.30034 2 12812 12763;12812 13.906 3.0821 1 149200 9122 11143 5590 5595 11308;11309 11309 -0.046800527703453554 FSDQRLYDF 9 Unmodified _FSDQRLYDF_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 596.2794189453125 2 595.77747 1189.54039 0.4739 0.00028234 -0.012657 -7.5406E-06 0.46124 0.0002748 595.7774676749433 58.487 0.83292 62.01 61.699 62.532 3.5231 84 56 2 0 0 0 0.1249 2 12684 12684;12724 29.082 3.741 1 231760 9123 11143 5590 5595 11310;11311 11310 -0.046800527703453554 FSDQRLYDF 9 Unmodified _FSDQRLYDF_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 596.2794189453125 2 595.77747 1189.54039 0.4739 0.00028234 -0.012657 -7.5406E-06 0.46124 0.0002748 595.7774676749433 58.487 0.83292 62.01 61.699 62.532 3.5231 84 56 2 0 0 0 0.073107 1 12684 12684 29.082 1.4528 1 231760 9124 11143 5590 5595 11312 11312 -0.046800527703453554 FSDQRLYDF 9 Unmodified _FSDQRLYDF_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|101|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 595.77747 1189.54039 0.57375 0.00034183 -0.18451 -0.00010993 0.38924 0.0002319 595.7772957018916 58.712 0.63173 62.211 61.83 62.462 3.4987 0.10356 -0.00010728 NaN 29.082 59 37 2 NaN NaN NaN NaN 0 NaN NaN 0 149200 9125 11143 5590 5595 -0.046800527703453554 FSDTGNFGF 9 Unmodified _FSDTGNFGF_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS UPN47_class_I_Rep_1 2 496.2113037109375 2 496.211432 990.408311 0.13356 6.6273E-05 -0.11082 -5.499E-05 0.022738 1.1283E-05 496.2113017972771 65.527 0.63155 68.883 68.562 69.193 3.3557 46 31 2 0 0 0 0.090251 2 15634 15588;15634 36.127 17.992 1 103880 9126 3260 5591 5596 11313;11314 11314 -0.08727657787278531 FSDTGNFGF 9 Unmodified _FSDTGNFGF_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MSMS UPN47_class_I_Rep_2 3 496.2116394042969 2 496.211432 990.408311 NaN NaN NaN NaN NaN NaN NaN 65.642 1 68.898 68.398 69.398 3.2556 0 0 0 0.0036588 1 15720 15720 58.679 14.272 1 9127 3260 5591 5596 11315 11315 -0.08727657787278531 FSDTGNFGF 9 Unmodified _FSDTGNFGF_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MSMS UPN47_class_I_Rep_3 4 496.21148681640625 2 496.211432 990.408311 NaN NaN NaN NaN NaN NaN NaN 65.755 1 68.94 68.44 69.44 3.1853 0 0 0 0.036836 1 15813 15813 41.84 13.353 1 9128 3260 5591 5596 11316 11316 -0.08727657787278531 FSDYLHPQY 9 Unmodified _FSDYLHPQY_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS UPN47_class_I_Rep_1 2 585.2661743164062 2 585.266739 1168.51892 0.2457 0.0001438 -0.0031714 -1.8561E-06 0.24253 0.00014195 585.2667305699841 50.318 0.87172 53.947 53.693 54.565 3.6285 79 39 3 0 0 0 0.028995 5 11089 10986;11000;11042;11089;11104 57.722 37.307 1 179980 9129 5783 5592 5597 11317;11318;11319;11320;11321 11320 -0.05859437799040279 FSDYLHPQY 9 Unmodified _FSDYLHPQY_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS UPN47_class_I_Rep_2 3 585.76904296875 2 585.266739 1168.51892 0.4656 0.0002725 -0.25028 -0.00014648 0.21532 0.00012602 585.2665296392638 50.702 0.78085 54.04 53.657 54.438 3.3386 87 41 3 0 0 0 0.022868 4 11119 11110;11119;11164;11205 61.602 38.866 1 195950 9130 5783 5592 5597 11322;11323;11324;11325 11323 -0.05859437799040279 FSDYLHPQY 9 Unmodified _FSDYLHPQY_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MSMS UPN47_class_I_Rep_2 3 585.2672119140625 2 585.266739 1168.51892 NaN NaN NaN NaN NaN NaN NaN 51.021 1 54.36 53.86 54.86 3.3386 0 0 0 0.3377 1 11266 11266 8.7454 3.0136 1 9131 5783 5592 5597 11326 11326 -0.05859437799040279 FSDYLHPQY 9 Unmodified _FSDYLHPQY_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS UPN47_class_I_Rep_3 4 585.2664184570312 2 585.266739 1168.51892 0.52813 0.0003091 -0.30814 -0.00018035 0.21999 0.00012875 585.26653343415 50.746 0.90208 53.963 53.713 54.615 3.2163 96 46 3 0 0 0 0.022868 4 11245 11202;11245;11288;11342 61.602 32.52 1 177450 9132 5783 5592 5597 11327;11328;11329;11330 11328 -0.05859437799040279 FSEALSYLK 9 Unmodified _FSEALSYLK_ 0 0 0 nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A nc|ENSG00000085831|Q5SRH9-3|TTC39A nc|ENSG00000085831|Q5SRH9-3|TTC39A MULTI-MSMS UPN48_class_I_Rep_3 7 529.7832641601562 2 529.281857 1056.54916 0.51483 0.00027249 -0.05516 -2.9195E-05 0.45967 0.0002433 529.2817977288653 64.908 0.66507 68.416 68.102 68.767 3.5077 112 49 3 0 0 0 0.1249 1 14710 14710 29.082 0 1 371490 9133 1269 5593 5598 11331 11331 0.023149208661379816 FSEDGSFIGAY 11 Unmodified _FSEDGSFIGAY_ 0 0 0 ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1 ENSG00000134121|ENST00000256509|CHL1 ENSG00000134121|ENST00000256509|CHL1 MSMS UPN47_class_I_Rep_2 3 596.761962890625 2 596.761486 1191.50842 NaN NaN NaN NaN NaN NaN NaN 66.928 1 70.192 69.692 70.692 3.2636 0 0 0 0.18661 1 16110 16110 18.146 1.0335 1 9134 2834 5594 5599 11332 11332 -0.07967465244132654 FSEDGSFIGAY 11 Unmodified _FSEDGSFIGAY_ 0 0 0 ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1 ENSG00000134121|ENST00000256509|CHL1 ENSG00000134121|ENST00000256509|CHL1 MSMS UPN47_class_I_Rep_3 4 596.760498046875 2 596.761486 1191.50842 NaN NaN NaN NaN NaN NaN NaN 66.894 1 70.086 69.586 70.586 3.1914 0 0 0 0.09964 1 16164 16164 22.736 4.5899 1 9135 2834 5594 5599 11333 11333 -0.07967465244132654 FSEDTALVLE 10 Unmodified _FSEDTALVLE_ 0 0 0 ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 MSMS UPN48_class_I_Rep_1 5 562.2785034179688 2 562.279512 1122.54447 NaN NaN NaN NaN NaN NaN NaN 23.026 1 26.587 26.087 27.087 3.5605 0 0 0 0.53105 1 2337 2337 1.4819 0 1 9136 3179 5595 5600 11334 11334 -0.011900080673058255 FSEELANLY 9 Unmodified _FSEELANLY_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS UPN47_class_I_Rep_1 2 543.2611083984375 2 543.261122 1084.50769 0.37799 0.00020534 0.13821 7.5083E-05 0.51619 0.00028043 543.2610066467875 67.519 0.46001 70.88 70.606 71.066 3.3611 63 37 2 0 0 0 0.090251 3 16229 16191;16195;16229 36.127 10.728 1 110350 9137 5133 5596 5601 11335;11336;11337 11337 -0.031182598931764005 FSEELANLY 9 Unmodified _FSEELANLY_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-SECPEP UPN47_class_I_Rep_1 2 543.3231811523438 2 543.261122 1084.50769 0.37999 0.00020643 1.0605 0.00057612 1.4405 0.00078255 543.2617489213943 67.736 0.16011 71.097 71.052 71.212 3.3611 11 8 2 0 0 0 0.11884 1 16310 16310 9.3831 0 1 42748 9138 5133 5596 5601 11338 11338 -0.031182598931764005 FSEELANLY 9 Unmodified _FSEELANLY_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS UPN47_class_I_Rep_2 3 543.2611083984375 2 543.261122 1084.50769 0.3495 0.00018987 -0.18071 -9.8172E-05 0.16879 9.1695E-05 543.2609315449068 67.706 0.54453 70.97 70.672 71.216 3.2636 72 45 2 0 0 0 0.066633 2 16364 16306;16364 41.84 16.44 1 112200 9139 5133 5596 5601 11339;11340 11340 -0.031182598931764005 FSEELANLY 9 Unmodified _FSEELANLY_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS UPN47_class_I_Rep_3 4 543.2619018554688 2 543.261122 1084.50769 0.42486 0.00023081 0.095611 5.1942E-05 0.52047 0.00028275 543.2610104941466 67.719 0.50452 70.911 70.631 71.136 3.1914 81 39 3 0 0 0 0.090251 4 16434 16389;16434;16450;16470 36.127 10.728 1 87950 9140 5133 5596 5601 11341;11342;11343;11344 11342 -0.031182598931764005 FSEGNYIGH 9 Unmodified _FSEGNYIGH_ 0 0 0 REV__Tigger1_dup3591|chr4:150968303-150969505:+|1.5814510659709295|0.0166820735628174|6.57|151.0|67|3|anti-sense REV__Tigger1_dup3591|chr4:150968303-150969505:+|1.5814510659709295|0.0166820735628174|6.57|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_1 5 512.2318115234375 2 512.230156 1022.44576 NaN NaN NaN NaN NaN NaN NaN 39.896 1 43.401 42.901 43.901 3.5048 0 0 0 0.3967 1 7098 7098 1.4819 0 1 + 9141 32424 5597 5602 11345 11345 -0.06456566521649165 FSEHLTSY 8 Unmodified _FSEHLTSY_ 0 0 0 ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|1|intron;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|3|intron;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I24.1,48511469,48514714|58|4.23|2|intron;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I24.1,48511469,48514714|58|4.23|5|intron;ENSG00000162869|ENST00000294952|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|2|intron;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|4|intron;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|1|intron;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|5|intron ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron MSMS UPN47_class_I_Rep_1 2 492.22705078125 2 492.227082 982.439611 NaN NaN NaN NaN NaN NaN NaN 33.788 1 37.487 36.987 37.987 3.6983 0 0 0 0.36705 1 5995 5995 18.135 2.2878 1 9142 3968 5598 5603 11346 11346 -0.05231084753199866 FSEHLTSY 8 Unmodified _FSEHLTSY_ 0 0 0 ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|1|intron;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|3|intron;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I24.1,48511469,48514714|58|4.23|2|intron;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I24.1,48511469,48514714|58|4.23|5|intron;ENSG00000162869|ENST00000294952|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|2|intron;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|4|intron;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|1|intron;ENSG00000162869.16,PPP1R21,chr2,+,I14.1,48474820,48479483|57|7.63|5|intron ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 492.22686767578125 2 492.227082 982.439611 -0.35895 -0.00017668 -0.89952 -0.00044277 -1.2585 -0.00061945 492.2271297742531 34.116 0.21251 37.391 37.217 37.43 3.2748 16 13 2 0 0 0 0.82752 1 6170 6170 18.135 1.1927 1 37920 9143 3968 5598 5603 11347 11347 -0.05231084753199866 FSEIDLEKY 9 Unmodified _FSEIDLEKY_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MULTI-MSMS UPN47_class_I_Rep_2 3 572.282470703125 2 572.282054 1142.54956 0.51806 0.00029648 0.16884 9.6626E-05 0.6869 0.0003931 572.2818516115203 55.713 0.37454 59.023 58.843 59.217 3.3102 29 22 2 0 0 0 0.22932 1 12691 12691 18.373 11.65 1 59059 9144 4832 5599 5604 11348 11348 -0.016017042046541974 FSEIDLEKY 9 Unmodified _FSEIDLEKY_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 572.282054 1142.54956 0.3273 0.00018731 0.19753 0.00011304 0.52483 0.00030035 572.2820247375533 55.432 0.53227 58.91 58.743 59.275 3.4785 -0.056514 1.5642E-05 NaN 18.373 44 32 2 NaN NaN NaN NaN 0 NaN NaN 0 48700 9145 4832 5599 5604 -0.016017042046541974 FSEKLMKY 8 Unmodified _FSEKLMKY_ 0 0 0 REV__L1MA3_dup5497|chrX:97005839-97007750:-|1.032282572902376|0.0206790410450002|5.64|150.0|15|1|sense REV__L1MA3_dup5497|chrX:97005839-97007750:-|1.032282572902376|0.0206790410450002|5.64|150.0|15|1|sense MSMS UPN47_class_I_Rep_3 4 523.2894897460938 2 523.272978 1044.5314 NaN NaN NaN NaN NaN NaN NaN 66.682 1 69.867 69.367 70.367 3.1853 0 0 0 0.39819 1 16098 16098 8.5933 0 1 + 9146 25052 5600 5605 11349 11349 0.010918823396650623 FSELNNFQAF 10 Unmodified _FSELNNFQAF_ 0 0 0 REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|106|3|anti-sense REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|106|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 608.785888671875 2 608.785296 1215.55604 0.56817 0.0003459 0.0864 5.2599E-05 0.65457 0.0003985 608.7852390035632 62.235 0.64252 65.697 65.464 66.106 3.4625 68 48 2 0 0 0 0.55335 1 13943 13943 8.7454 4.4162 1 135520 + 9147 25045 5601 5606 11350 11350 -0.043117662532722534 FSELNNFQAF 10 Unmodified _FSELNNFQAF_ 0 0 0 REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|106|3|anti-sense REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|106|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 609.3137817382812 2 608.785296 1215.55604 0.56817 0.0003459 0.0864 5.2599E-05 0.65457 0.0003985 608.7852390035632 62.235 0.64252 65.697 65.464 66.106 3.4625 68 48 2 0 0 0 0.84575 1 13947 13947 12.241 5.5175 1 135520 + 9148 25045 5601 5606 11351 11351 -0.043117662532722534 FSELNNFQAF 10 Unmodified _FSELNNFQAF_ 0 0 0 REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|106|3|anti-sense REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|106|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 608.785296 1215.55604 0.56393 0.00034331 0.18409 0.00011207 0.74802 0.00045538 608.7853260477495 61.964 0.64618 65.474 65.161 65.807 3.5104 -0.13549 6.9515E-05 NaN 8.7454 92 57 2 NaN NaN NaN NaN 0 NaN NaN 0 124990 + 9149 25045 5601 5606 -0.043117662532722534 FSENTLQFY 9 Unmodified _FSENTLQFY_ 0 0 0 nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24 nc|ENSG00000008838|O75448-2|MED24 nc|ENSG00000008838|O75448-2|MED24 MULTI-MSMS UPN47_class_I_Rep_1 2 574.7665405273438 2 574.766571 1147.51859 0.32605 0.0001874 -0.022341 -1.2841E-05 0.30371 0.00017456 574.7665228032793 67.671 0.59074 71.032 70.744 71.335 3.3611 92 44 3 0 0 0 0.0070866 1 16272 16272 71.922 7.686 1 228720 9150 742 5602 5607 11352 11352 -0.049268575188989416 FSENTLQFY 9 Unmodified _FSENTLQFY_ 0 0 0 nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24 nc|ENSG00000008838|O75448-2|MED24 nc|ENSG00000008838|O75448-2|MED24 MULTI-MSMS UPN47_class_I_Rep_2 3 574.7666015625 2 574.766571 1147.51859 0.38748 0.00022271 -0.17546 -0.00010085 0.21202 0.00012186 574.7663132268257 67.849 0.68037 71.113 70.832 71.512 3.2636 111 58 3 0 0 0 0.021334 3 16415 16379;16415;16455 62.573 7.7991 1 207880 9151 742 5602 5607 11353;11354;11355 11354 -0.049268575188989416 FSENTLQFY 9 Unmodified _FSENTLQFY_ 0 0 0 nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24 nc|ENSG00000008838|O75448-2|MED24 nc|ENSG00000008838|O75448-2|MED24 MULTI-MSMS UPN47_class_I_Rep_3 4 574.7666625976562 2 574.766571 1147.51859 0.44119 0.00025358 -0.11674 -6.7099E-05 0.32445 0.00018648 574.7664442400406 67.844 0.67651 71.036 70.709 71.385 3.1914 89 50 2 0 0 0 0.021334 2 16462 16425;16462 62.573 7.8118 1 208140 9152 742 5602 5607 11356;11357 11357 -0.049268575188989416 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1 ENSG00000123143|ENST00000242783|PKN1 ENSG00000123143|ENST00000242783|PKN1 MULTI-MSMS UPN47_class_I_Rep_1 2 565.2877197265625 2 565.287474 1128.5604 0.37388 0.00021135 -0.0466 -2.6343E-05 0.32728 0.00018501 565.2874229723584 57.488 0.59748 60.925 60.593 61.19 3.437 94 53 2 0 0 0 0.31407 2 13197 13197;13249 13.042 3.6593 1 90098 9153 2409 5603 5608 11358;11359 11358 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1 ENSG00000123143|ENST00000242783|PKN1 ENSG00000123143|ENST00000242783|PKN1 MULTI-MSMS UPN47_class_I_Rep_2 3 565.2874755859375 2 565.287474 1128.5604 0.51924 0.00029352 -0.39668 -0.00022424 0.12256 6.9283E-05 565.286999039567 57.688 0.46851 60.979 60.669 61.137 3.2912 54 44 2 0 0 0 0.23293 1 13312 13312 18.146 4.2403 1 75464 9154 2409 5603 5608 11360 11360 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1 ENSG00000123143|ENST00000242783|PKN1 ENSG00000123143|ENST00000242783|PKN1 MSMS UPN47_class_I_Rep_2 3 565.2869262695312 2 565.287474 1128.5604 NaN NaN NaN NaN NaN NaN NaN 57.556 1 60.847 60.347 61.347 3.2912 0 0 0 0.3377 1 13261 13261 8.7454 2.3913 1 9155 2409 5603 5608 11361 11361 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1 ENSG00000123143|ENST00000242783|PKN1 ENSG00000123143|ENST00000242783|PKN1 MSMS UPN47_class_I_Rep_2 3 565.2877197265625 2 565.287474 1128.5604 NaN NaN NaN NaN NaN NaN NaN 57.862 1 61.153 60.653 61.653 3.2912 0 0 0 0.3377 1 13351 13351 8.7454 3.0136 1 9156 2409 5603 5608 11362 11362 0.001257429602674165 FSEPRAIFY 9 Unmodified _FSEPRAIFY_ 0 0 0 ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1 ENSG00000123143|ENST00000242783|PKN1 ENSG00000123143|ENST00000242783|PKN1 MULTI-MSMS UPN47_class_I_Rep_3 4 565.2858276367188 2 565.287474 1128.5604 0.35514 0.00020076 0.18219 0.00010299 0.53733 0.00030375 565.2875544865344 57.784 0.65976 60.952 60.729 61.389 3.1681 67 49 2 0 0 0 0.23293 3 13357 13341;13357;13385 18.146 3.6593 1 84684 9157 2409 5603 5608 11363;11364;11365 11364 0.001257429602674165 FSEQQLDLY 9 Unmodified _FSEQQLDLY_ 0 0 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS UPN47_class_I_Rep_1 2 572.2877807617188 2 571.771854 1141.52915 0.34838 0.0001992 1.0702 0.00061191 1.4186 0.00081111 571.7719043173411 64.335 0.064835 67.691 67.635 67.7 3.3557 10 7 2 0 0 0 0.16799 1 15280 15280 23.79 3.3752 1 48567 9158 5590 5604 5609 11366 11366 -0.03594874864461417 FSEQQLDLY 9 Unmodified _FSEQQLDLY_ 0 0 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS UPN47_class_I_Rep_3 4 571.771484375 2 571.771854 1141.52915 0.43314 0.00024765 0.32459 0.00018559 0.75773 0.00043325 571.7713892374123 64.687 0.32973 67.867 67.776 68.105 3.1795 39 26 2 0 0 0 0.21414 1 15471 15471 19.362 1.2156 1 61457 9159 5590 5604 5609 11367 11367 -0.03594874864461417 FSEQVAMGY 9 Oxidation (M) _FSEQVAM(Oxidation (M))GY_ FSEQVAM(1)GY FSEQVAM(89)GY 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS UPN47_class_I_Rep_1 2 524.2259521484375 2 524.226225 1046.4379 0.023028 1.2072E-05 -0.23651 -0.00012398 -0.21348 -0.00011191 524.2259683432947 44.842 1.2283 48.542 48.183 49.412 3.6999 200 76 4 0 0 0 0.0064763 4 9415 9297;9337;9379;9415 111.29 71.33 1 1079100 9160 4844 5605 5610 11368;11369;11370;11371 11371 153 -0.08346461833457397 FSEQVAMGY 9 Oxidation (M) _FSEQVAM(Oxidation (M))GY_ FSEQVAM(1)GY FSEQVAM(69)GY 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS UPN47_class_I_Rep_1 2 524.22607421875 2 524.226225 1046.4379 0.14213 7.451E-05 -0.27361 -0.00014343 -0.13148 -6.8923E-05 524.2259956023947 49.266 2.391 52.925 51.485 53.876 3.6592 248 147 2 0 0 0 0.011285 2 10722 10684;10722 69.105 36.799 1 295450 9161 4844 5605 5610 11372;11373 11373 153 -0.08346461833457397 FSEQVAMGY 9 Oxidation (M) _FSEQVAM(Oxidation (M))GY_ FSEQVAM(1)GY FSEQVAM(89)GY 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS UPN47_class_I_Rep_2 3 524.2260131835938 2 524.226225 1046.4379 -0.16658 -8.7325E-05 -0.10266 -5.3817E-05 -0.26924 -0.00014114 524.2260722501518 45.163 1.4922 48.517 48.089 49.581 3.354 194 90 4 0 0 0 0.0064763 4 9535 9409;9451;9492;9535 111.29 71.33 1 1160300 9162 4844 5605 5610 11374;11375;11376;11377 11377 153 -0.08346461833457397 FSEQVAMGY 9 Oxidation (M) _FSEQVAM(Oxidation (M))GY_ FSEQVAM(1)GY FSEQVAM(60)GY 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS UPN47_class_I_Rep_2 3 524.2262573242188 2 524.226225 1046.4379 0.026452 1.3867E-05 -0.18722 -9.8147E-05 -0.16077 -8.428E-05 524.2260359608828 49.507 2.799 52.85 51.295 54.094 3.3431 239 160 2 0 0 0 0.025281 6 10892 10770;10807;10849;10892;10935;10977 60.074 34.675 1 269950 9163 4844 5605 5610 11378;11379;11380;11381;11382;11383 11381 153 -0.08346461833457397 FSEQVAMGY 9 Oxidation (M) _FSEQVAM(Oxidation (M))GY_ FSEQVAM(1)GY FSEQVAM(89)GY 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS UPN47_class_I_Rep_3 4 524.2259521484375 2 524.226225 1046.4379 0.13206 6.9229E-05 -0.37161 -0.00019481 -0.23955 -0.00012558 524.2259180383588 45.205 1.3886 48.449 48.089 49.478 3.2441 222 86 4 0 0 0 0.0064763 4 9599 9483;9523;9562;9599 99.799 59.842 1 1282700 9164 4844 5605 5610 11384;11385;11386;11387 11387 153 -0.08346461833457397 FSEQVAMGY 9 Oxidation (M) _FSEQVAM(Oxidation (M))GY_ 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 524.226225 1046.4379 0.36318 0.00019039 -0.46205 -0.00024222 -0.098865 -5.1828E-05 524.2258833431775 49.814 2.4761 53.04 51.554 54.03 3.2262 0.10165 -0.00017006 NaN 69.105 262 139 3 NaN NaN NaN NaN 0 NaN NaN 0 242860 9165 4844 5605 5610 153 -0.08346461833457397 FSESEKKSYF 10 Unmodified _FSESEKKSYF_ 0 0 0 nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9 nc|ENSG00000185792|Q7RTR0-2|NLRP9 nc|ENSG00000185792|Q7RTR0-2|NLRP9 MULTI-MSMS UPN47_class_I_Rep_2 3 626.2982177734375 2 626.298236 1250.58192 0.044987 2.8175E-05 -0.24497 -0.00015343 -0.19998 -0.00012525 626.2979524299834 39.174 0.65224 42.552 42.296 42.948 3.3785 56 34 2 0 0 0 0.56078 1 7656 7656 3.2813 0.28607 1 90083 9166 5120 5606 5611 11388 11388 -0.03334916801645704 FSEYFGAIY 9 Unmodified _FSEYFGAIY_ 0 0 0 nc|ENSG00000085274|Q9NPC7-4|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN nc|ENSG00000085274|Q9NPC7-4|MYNN nc|ENSG00000085274|Q9NPC7-4|MYNN MSMS UPN47_class_I_Rep_1 2 548.7530517578125 2 548.752933 1095.49131 NaN NaN NaN NaN NaN NaN NaN 74.927 1 78.321 77.821 78.821 3.3937 0 0 0 0.081393 1 18466 18466 28.487 11.545 1 9167 1261 5607 5612 11389 11389 -0.052613410592812215 FSEYFGAIY 9 Unmodified _FSEYFGAIY_ 0 0 0 nc|ENSG00000085274|Q9NPC7-4|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN nc|ENSG00000085274|Q9NPC7-4|MYNN nc|ENSG00000085274|Q9NPC7-4|MYNN MSMS UPN47_class_I_Rep_2 3 548.7539672851562 2 548.752933 1095.49131 NaN NaN NaN NaN NaN NaN NaN 75.118 1 78.431 77.931 78.931 3.3127 0 0 0 0.1074 1 18533 18533 23.148 6.2061 1 9168 1261 5607 5612 11390 11390 -0.052613410592812215 FSEYFGAIY 9 Unmodified _FSEYFGAIY_ 0 0 0 nc|ENSG00000085274|Q9NPC7-4|MYNN;nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN nc|ENSG00000085274|Q9NPC7-4|MYNN nc|ENSG00000085274|Q9NPC7-4|MYNN MSMS UPN47_class_I_Rep_3 4 548.7528686523438 2 548.752933 1095.49131 NaN NaN NaN NaN NaN NaN NaN 75.143 1 78.389 77.889 78.889 3.2464 0 0 0 0.11494 1 18626 18626 21.747 10.106 1 9169 1261 5607 5612 11391 11391 -0.052613410592812215 FSFFSYTFL 9 Unmodified _FSFFSYTFL_ 0 0 0 REV__L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|38|1|anti-sense REV__L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_3 4 579.7778930664062 2 579.778951 1157.54335 NaN NaN NaN NaN NaN NaN NaN 84.283 1 87.645 87.145 88.145 3.3615 0 0 0 0.19137 1 21151 21151 16.942 0 1 + 9170 25794 5608 5613 11392 11392 -0.02912177645544034 FSFFVKKFK 9 Unmodified _FSFFVKKFK_ 0 0 0 REV__L1MEd_dup11699|chr9:6463852-6464903:-|2.151596443267639|0.0189893760674744|6.82|151.0|61|2|anti-sense REV__L1MEd_dup11699|chr9:6463852-6464903:-|2.151596443267639|0.0189893760674744|6.82|151.0|61|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.3435668945312 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 96.97 1 100.45 99.949 100.95 3.4791 0 0 0 0.39518 1 23816 23816 1.8442 0.36234 1 + 9171 28506 5609 5614 11393 11393 0.08828373650385402 FSFGFMYP 8 Unmodified _FSFGFMYP_ 0 0 0 REV__L1MC4_dup14137|chrX:47983601-47984598:+|1.4963593131237278|0.4671344180574412|1.68|151.0|61|2|anti-sense REV__L1MC4_dup14137|chrX:47983601-47984598:+|1.4963593131237278|0.4671344180574412|1.68|151.0|61|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 498.21990966796875 2 498.220214 994.425876 -0.40102 -0.00019979 0.25734 0.00012821 -0.14368 -7.1585E-05 498.220254363832 30.168 0.66151 33.479 33.093 33.754 3.3116 80 54 2 0 0 0 0.82752 1 4907 4907 2.5775 0.27475 1 80899 + 9172 26813 5610 5615 11394 11394 -0.07156033785986438 FSFHLNFN 8 Unmodified _FSFHLNFN_ 0 0 0 REV__L1MC4a_dup117|chr1:41086887-41087937:+|1.0220558807349365|0.0303273456553373|5.07|151.0|63|3|anti-sense REV__L1MC4a_dup117|chr1:41086887-41087937:+|1.0220558807349365|0.0303273456553373|5.07|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 513.2454833984375 2 513.245609 1024.47667 NaN NaN NaN NaN NaN NaN NaN 65.681 1 69.188 68.688 69.688 3.5077 0 0 0 0.38112 1 14861 14861 14.838 1.3304 1 + 9173 26972 5611 5616 11395 11395 -0.03459368416747566 FSFNQLLL 8 Unmodified _FSFNQLLL_ 0 0 0 REV__ENST00000460410.5_1_3:112730241-112732223:-|nuORF REV__ENST00000460410.5_1_3:112730241-112732223:-|nuORF MSMS UPN46_class_I_Rep_3 1 491.4454345703125 2 491.273835 980.533118 NaN NaN NaN NaN NaN NaN NaN 57.862 1 57.862 57.362 58.362 0 0 0 0 0.40404 1 12704 12704 5.2307 0 1 + 9174 22424 5612 5617 11396 11396 0.04207259419922593 FSFQFWTF 8 Unmodified _FSFQFWTF_ 0 0 0 L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.2588500976562 2 555.258185 1108.50182 0.48143 0.00026732 -0.77038 -0.00042776 -0.28895 -0.00016044 555.2577147286894 50.854 1.4992 54.522 53.729 55.229 3.6679 190 98 3 0 0 0 0.82752 1 10320 10320 32.305 1.6689 1 234940 9175 10823 5613 5618 11397 11397 -0.04809313614214261 FSFQFWTF 8 Unmodified _FSFQFWTF_ 0 0 0 L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 555.2587280273438 2 555.258185 1108.50182 0.28193 0.00015654 -0.5383 -0.0002989 -0.25637 -0.00014235 555.2578003301961 50.969 1.4365 54.579 53.759 55.195 3.6105 166 95 2 0 0 0 0.82752 1 10187 10187 14.838 0.93222 1 272550 9176 10823 5613 5618 11398 11398 -0.04809313614214261 FSFQFWTF 8 Unmodified _FSFQFWTF_ 0 0 0 L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense L1MB7_dup3492|chr2:227547519-227548363:+|2.002242636893486|0.4757548357134005|2.07|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 555.2576904296875 2 555.258185 1108.50182 NaN NaN NaN NaN NaN NaN NaN 49.973 1 53.594 53.094 54.094 3.621 0 0 0 0.37681 1 10089 10089 15.847 0 1 9177 10823 5613 5618 11399 11399 -0.04809313614214261 FSFSQGLDSFH 11 Unmodified _FSFSQGLDSFH_ 0 0 0 REV__nc|ENSG00000144847|Q5DX21-3|IGSF11 REV__nc|ENSG00000144847|Q5DX21-3|IGSF11 MSMS UPN47_class_I_Rep_1 2 636.291015625 2 636.288202 1270.56185 NaN NaN NaN NaN NaN NaN NaN 61.214 1 64.595 64.095 65.095 3.3815 0 0 0 0.38417 1 14338 14338 3.8763 0.88109 1 + 9178 19497 5614 5619 11400 11400 -0.06260667741639736 FSGQVLHNV 9 Unmodified _FSGQVLHNV_ 0 0 0 REV__L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|239|3|anti-sense REV__L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|239|3|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7668762207031 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 33.275 1 36.795 36.295 37.295 3.5201 0 0 0 0.39428 1 5169 5169 2.0598 0.21551 1 + 9179 29392 5615 5620 11401 11401 0.01400303128991709 FSGSRNLK 8 Unmodified _FSGSRNLK_ 0 0 0 REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF MSMS UPN47_class_I_Rep_3 4 454.7507019042969 2 454.751059 907.487565 NaN NaN NaN NaN NaN NaN NaN 46.113 1 49.357 48.857 49.857 3.2441 0 0 0 0.40157 1 9835 9835 7.2892 2.0586 1 + 9180 22260 5616 5621 11402 11402 0.030120339575205435 FSHLSLEKDN 10 Unmodified _FSHLSLEKDN_ 0 0 0 nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 MULTI-MSMS UPN47_class_I_Rep_2 3 595.7979125976562 2 595.296027 1188.5775 0.5194 0.0003092 -0.31639 -0.00018835 0.20301 0.00012085 595.7972916367468 58.16 0.55471 61.441 61.19 61.745 3.2818 58 33 2 0 0 0 0.56118 1 13448 13448 2.9952 0.26005 1 150440 9181 16839 5617 5622 11403 11403 -0.009243812245813388 FSHWLYYF 8 Unmodified _FSHWLYYF_ 0 0 0 L1MB2_dup2446|chr5:75441450-75442126:-|1.0063779510724096|0.0182018157742398|5.79|149.0|34|1|anti-sense L1MB2_dup2446|chr5:75441450-75442126:-|1.0063779510724096|0.0182018157742398|5.79|149.0|34|1|anti-sense L1MB2_dup2446|chr5:75441450-75442126:-|1.0063779510724096|0.0182018157742398|5.79|149.0|34|1|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7686157226562 2 581.77146 1161.52837 NaN NaN NaN NaN NaN NaN NaN 74.495 1 77.741 77.241 78.241 3.2464 0 0 0 0.38221 1 18440 18440 14.582 2.0501 1 9182 10224 5618 5623 11404 11404 -0.0459362472288376 FSIHPRIL 8 Unmodified _FSIHPRIL_ 0 0 0 L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7993469238281 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.196 1 62.685 62.185 63.185 3.4892 0 0 0 0.37681 1 12963 12963 15.847 1.0089 1 9183 11609 5619 5624 11405 11405 0.08446074267999393 FSIHPRIL 8 Unmodified _FSIHPRIL_ 0 0 0 L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7953186035156 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.201 1 62.688 62.188 63.188 3.4868 0 0 0 0.37681 1 12965 12965 15.847 1.2655 1 9184 11609 5619 5624 11406 11406 0.08446074267999393 FSIHPRIL 8 Unmodified _FSIHPRIL_ 0 0 0 L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7975769042969 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.23 1 62.717 62.217 63.217 3.4868 0 0 0 0.37681 1 12974 12974 15.847 1.2655 1 9185 11609 5619 5624 11407 11407 0.08446074267999393 FSIHPRIL 8 Unmodified _FSIHPRIL_ 0 0 0 L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.7962646484375 2 491.795269 981.575986 0.20562 0.00010112 3.6365 0.0017884 3.8421 0.0018895 491.7971447727939 59.226 0.57115 62.749 62.398 62.969 3.5231 63 37 2 0 0 0 0.82752 1 12894 12894 15.847 4.2069 1 222720 9186 11609 5619 5624 11408 11408 0.08446074267999393 FSIIRFNNS 9 Unmodified _FSIIRFNNS_ 0 0 0 REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|79|3|sense REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|79|3|sense MSMS UPN47_class_I_Rep_2 3 549.272216796875 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 39.838 1 43.209 42.709 43.709 3.3712 0 0 0 0.38784 1 7869 7869 3.5965 0.31518 1 + 9187 31443 5620 5625 11409 11409 0.022122611917893664 FSIIRFNNS 9 Unmodified _FSIIRFNNS_ 0 0 0 REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|79|3|sense REV__MER57-int_dup828|chr11:35693294-35696136:-|1.067119585053012|0.1202209043871016|3.15|151.0|79|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.2719116210938 2 549.290548 1096.56654 -0.045438 -2.4958E-05 0.61299 0.00033671 0.56755 0.00031175 549.2908983202478 39.822 0.50994 43.059 42.747 43.257 3.2372 40 34 2 0 0 0 0.42249 1 7933 7933 6.7232 0.51738 1 57459 + 9188 31443 5620 5625 11410 11410 0.022122611917893664 FSISTCCLTF 10 Unmodified _FSISTCCLTF_ 0 0 0 Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|75|1|anti-sense Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|75|1|anti-sense Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|75|1|anti-sense MSMS UPN48_class_I_Rep_2 6 561.252197265625 2 561.253928 1120.4933 NaN NaN NaN NaN NaN NaN NaN 85.877 1 89.582 89.082 90.082 3.7058 0 0 0 0.53105 1 20440 20440 3.2813 0.70383 1 9189 33109 5621 5626 11411 11411 -0.062123716373434945 FSKFPSYIF 9 Unmodified _FSKFPSYIF_ 0 0 0 REV__L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|62|1|anti-sense REV__L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|62|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.79638671875 2 568.294768 1134.57498 0.50721 0.00028824 -0.06525 -3.7081E-05 0.44196 0.00025116 568.2946542500416 67.583 0.41689 71.091 70.929 71.346 3.5077 61 38 2 0 0 0 0.28552 1 15414 15414 14.838 4.0143 1 104980 + 9190 27665 5622 5627 11412 11412 0.013078151084073397 FSKFPSYIF 9 Unmodified _FSKFPSYIF_ 0 0 0 REV__L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|62|1|anti-sense REV__L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|62|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 568.294768 1134.57498 0.49917 0.00028368 -0.093423 -5.3092E-05 0.40575 0.00023058 568.294443423144 67.699 0.19781 71.195 71.049 71.246 3.4964 0.052246 -2.8201E-05 NaN 14.838 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 73866 + 9191 27665 5622 5627 0.013078151084073397 FSKIDPEIGSF 11 Unmodified _FSKIDPEIGSF_ 0 0 0 REV__DOCK11|p.P358S|1|0.06|ENSG00000147251|chrX:118572359-118572359|C/T|missense_variant REV__DOCK11|p.P358S|1|0.06|ENSG00000147251|chrX:118572359-118572359|C/T|missense_variant MSMS UPN48_class_I_Rep_2 6 620.3162231445312 2 620.316428 1238.6183 NaN NaN NaN NaN NaN NaN NaN 38.161 1 41.877 41.377 42.377 3.7164 0 0 0 0.38417 1 6617 6617 2.7352 0 1 + 9192 17504 5623 5628 11413 11413 0.008539600950143722 FSKIRKKKIRM 11 Unmodified _FSKIRKKKIRM_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.9750061035156 3 478.974508 1433.90169 0.15555 7.4505E-05 0.58705 0.00028118 0.74261 0.00035569 478.97466068987256 43.879 0.29874 47.64 47.499 47.798 3.7617 44 20 4 0 0 0 0.68081 1 8340 8340 0.45452 0.046251 1 416640 9193 13280 5624 5629 11414 11414 0.20209892729508283 FSKIRKKKIRM 11 Unmodified _FSKIRKKKIRM_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.9750671386719 3 478.974508 1433.90169 0.13779 6.5998E-05 0.27377 0.00013113 0.41156 0.00019713 478.9746321320709 44.139 0.6312 47.778 47.414 48.046 3.6385 73 40 3 0 0 0 0.68478 1 8294 8294 0.094841 0.011491 1 139100 9194 13280 5624 5629 11415 11415 0.20209892729508283 FSKIRKKKIRM 11 Unmodified _FSKIRKKKIRM_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 479.24298095703125 3 478.974508 1433.90169 0.13859 6.638E-05 0.47753 0.00022873 0.61612 0.00029511 478.97467559079814 44.76 0.67529 48.397 48.222 48.897 3.6372 56 45 2 0 0 0 22.551 1 8507 8507 0.094841 0.094841 1 294480 9195 13280 5624 5629 11416 11416 0.20209892729508283 FSKIRKKKIRM 11 Unmodified _FSKIRKKKIRM_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|41|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 478.974508 1433.90169 0.21755 0.0001042 0.31846 0.00015253 0.53601 0.00025674 478.9747444680295 48.436 0.17081 48.436 48.325 48.496 0 0.019389 -0.00021731 NaN 0.094841 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 241590 9196 13280 5624 5629 0.20209892729508283 FSKKKKKKKKK 11 Unmodified _FSKKKKKKKKK_ 0 0 0 AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|7|2|sense AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 469.3295593261719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 28.874 1 32.632 32.132 33.132 3.7578 0 0 0 0.38417 1 4508 4508 0.094841 0.094841 1 9197 286 5625 5630 11417 11417 0.279389961581046 FSKKVHLK 8 Unmodified _FSKKVHLK_ 0 0 0 ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B MSMS UPN46_class_I_Rep_3 1 493.8094787597656 2 493.810919 985.607286 NaN NaN NaN NaN NaN NaN NaN 64.997 1 64.997 64.497 65.497 0 0 0 0 0.40604 1 14669 14669 2.5775 0 1 9198 4950 5626 5631 11418 11418 0.11390647302084744 FSKSSFMHTF 10 Unmodified _FSKSSFMHTF_ 0 0 0 REV__L1M4_dup18316|chr17:61277284-61278025:+|1.1152714566669997|0.0081233254018061|7.1|151.0|36|1|anti-sense REV__L1M4_dup18316|chr17:61277284-61278025:+|1.1152714566669997|0.0081233254018061|7.1|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_2 3 406.85797119140625 3 406.858586 1217.55393 NaN NaN NaN NaN NaN NaN NaN 14.106 1 17.493 16.993 17.993 3.3871 0 0 0 0.53105 1 492 492 1.7423 0 1 + 9199 24404 5627 5632 11419 11419 -0.046145182627469694 FSKVSGYKV 9 Unmodified _FSKVSGYKV_ 0 0 0 L1PA6_dup42|chr1:41133322-41134597:+|1.7211086428647933|0.0263191832199487|6.03|150.0|41|3|sense;L1PA7_dup11804|chr15:64311885-64313754:+|1.1812393589126209|0.0081270355026263|7.18|149.0|1|1|sense;L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|37|2|sense;L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|86|2|sense;L1PA7_dup1151|chr2:66485103-66487163:-|1.842734170497374|0.0759779657544799|4.6|128.0|2|1|sense;L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|153|3|sense;L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|47|2|sense;L1PA5_dup2779|chr4:71012179-71017935:+|1.2668742847391803|0.0427819807789749|4.89|151.0|155|3|sense;L1PA4_dup1403|chr2:148226113-148231635:-|1.6637721982120748|0.0485281896709338|5.1|151.0|37|1|sense;L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|24|1|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|153|3|sense;L1PA10_dup227|chr1:147972657-147976953:-|3.864185909004816|0.4132861983585244|3.22|151.0|120|3|sense L1PA6_dup42|chr1:41133322-41134597:+|1.7211086428647933|0.0263191832199487|6.03|150.0|41|3|sense L1PA6_dup42|chr1:41133322-41134597:+|1.7211086428647933|0.0263191832199487|6.03|150.0|41|3|sense MSMS UPN46_class_I_Rep_3 1 507.853759765625 2 507.784567 1013.55458 NaN NaN NaN NaN NaN NaN NaN 40.322 1 40.322 39.822 40.822 0 0 0 0 0.3824 1 7817 7817 4.897 2.5943 1 9200 9490 5628 5633 11420 11420 0.04834644448612835 FSLAKLRAAF 10 Unmodified _FSLAKLRAAF_ 0 0 0 REV__ESPL1|p.G241Mfs*43|1|0.67|ENSG00000135476|chr12:53269661-53269662|-/GA|frameshift_variant REV__ESPL1|p.G241Mfs*43|1|0.67|ENSG00000135476|chr12:53269661-53269662|-/GA|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 562.8367919921875 2 562.334759 1122.65496 0.63501 0.00035709 0.1637 9.2057E-05 0.79871 0.00044914 562.3343733601961 109.34 0.88783 112.87 112.69 113.58 3.5307 299 123 3 0 0 0 0.55148 1 26774 26774 5.2969 1.3525 1 10055000 + 9201 19141 5629 5634 11421 11421 0.09854301502264207 FSLDIFFKV 9 Unmodified _FSLDIFFKV_ 0 0 0 REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|129|3|anti-sense REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|129|3|anti-sense MSMS UPN48_class_I_Rep_2 6 558.3131713867188 2 558.310418 1114.60628 NaN NaN NaN NaN NaN NaN NaN 44.493 1 48.255 47.755 48.755 3.7617 0 0 0 0.39428 1 8485 8485 2.0598 0.21551 1 + 9202 23513 5630 5635 11422 11422 0.05356388142513424 FSLELASRR 9 Unmodified _FSLELASRR_ 0 0 0 ENST00000527733.5_2_11:11863643-11901727:+|nuORF ENST00000527733.5_2_11:11863643-11901727:+|nuORF ENST00000527733.5_2_11:11863643-11901727:+|nuORF MSMS UPN48_class_I_Rep_2 6 539.81689453125 2 539.803823 1077.59309 NaN NaN NaN NaN NaN NaN NaN 55.525 1 59.08 58.58 59.58 3.5559 0 0 0 0.29868 1 11842 11842 10.824 0.75 1 9203 7273 5631 5636 11423 11423 0.057399500831252226 FSLFRTKK 8 Unmodified _FSLFRTKK_ 0 0 0 REV__L1MA2_dup6363|chr14:49705852-49707197:-|1.1045649980709562|0.0975369739235728|3.5|151.0|33|3|sense REV__L1MA2_dup6363|chr14:49705852-49707197:-|1.1045649980709562|0.0975369739235728|3.5|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.8065795898438 2 513.808377 1025.6022 0.26961 0.00013853 -2.1962 -0.0011284 -1.9266 -0.00098991 513.8066037716496 61.54 0.56724 64.908 64.711 65.278 3.3681 67 40 2 0 0 0 0.82752 1 14499 14499 8.5933 2.2392 1 297320 + 9204 24914 5632 5637 11424 11424 0.09042343439477918 FSLGSPFKY 9 Unmodified _FSLGSPFKY_ 0 0 0 HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|138|2|anti-sense HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|138|2|anti-sense HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|138|2|anti-sense MSMS UPN47_class_I_Rep_3 4 523.28955078125 2 523.271293 1044.52803 NaN NaN NaN NaN NaN NaN NaN 66.929 1 70.121 69.621 70.621 3.1914 0 0 0 0.28335 1 16174 16174 11.64 0.81637 1 9205 7948 5633 5638 11425 11425 0.007549555572722966 FSLGSVLSIP 10 Unmodified _FSLGSVLSIP_ 0 0 0 REV__L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|28|1|anti-sense REV__L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|28|1|anti-sense MSMS UPN46_class_I_Rep_3 1 510.26544189453125 2 510.292225 1018.5699 NaN NaN NaN NaN NaN NaN NaN 37.89 1 37.89 37.39 38.39 0 0 0 0 0.53105 1 7168 7168 3.2813 0 1 + 9206 27006 5634 5639 11426 11426 0.061355112458159056 FSLILLPKLK 10 Unmodified _FSLILLPKLK_ 0 0 0 REV__Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|46|2|sense REV__Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 586.3921508789062 2 586.394285 1170.77402 NaN NaN NaN NaN NaN NaN NaN 42.677 1 42.677 42.177 43.177 0 0 0 0 0.53105 1 8467 8467 0.45834 0 1 + 9207 32473 5635 5640 11427 11427 0.195460754071064 FSLLVLLY 8 Unmodified _FSLLVLLY_ 0 0 0 L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|41|2|anti-sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|41|2|anti-sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2954406738281 2 484.296779 966.579005 NaN NaN NaN NaN NaN NaN NaN 31.326 1 35.028 34.528 35.528 3.7015 0 0 0 0.40604 1 4623 4623 2.5775 0 1 9208 13071 5636 5641 11428 11428 0.09437904602123126 FSLQSHEGGY 10 Unmodified _FSLQSHEGGY_ 0 0 0 L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|44|2|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|44|2|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|44|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.7545166015625 2 562.753995 1123.49344 0.2832 0.00015937 -0.20846 -0.00011731 0.074742 4.2061E-05 562.7537992091975 46.192 0.92208 49.436 49.044 49.966 3.2441 113 57 3 0 0 0 0.4965 1 9796 9796 12.241 0.60036 1 244680 9209 11947 5637 5642 11429 11429 -0.06336912321467025 FSLSPSEISI 10 Unmodified _FSLSPSEISI_ 0 0 0 REV__L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|79|2|anti-sense REV__L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|79|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.2845458984375 2 540.284597 1078.55464 0.45138 0.00024387 -1.0385 -0.0005611 -0.58715 -0.00031723 540.2838680270497 82.494 0.50402 86.007 85.746 86.25 3.5122 72 56 2 0 0 0 0.31342 2 20632 20582;20632 29.082 12.241 1 112820 + 9210 26948 5638 5643 11430;11431 11431 0.01850599657973362 FSLSPSEISI 10 Unmodified _FSLSPSEISI_ 0 0 0 REV__L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|79|2|anti-sense REV__L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|79|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 539.8046264648438 2 540.284597 1078.55464 0.45749 0.00024717 -0.6029 -0.00032574 -0.14541 -7.8563E-05 540.2840452278251 82.635 0.76419 85.972 85.729 86.493 3.337 181 90 3 0 0 0 0.84575 1 20666 20666 12.241 12.241 1 228710 + 9211 26948 5638 5643 11432 11432 0.01850599657973362 FSLVFFVM 8 Unmodified _FSLVFFVM_ 0 0 0 REV__L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|27|2|anti-sense REV__L1MEf_dup4322|chr6:82182204-82182877:+|1.1643801290499132|0.1997522091770981|2.54|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_1 5 495.26397705078125 2 495.261882 988.509211 NaN NaN NaN NaN NaN NaN NaN 54.803 1 58.311 57.811 58.811 3.5082 0 0 0 0.39408 1 11638 11638 10.183 0 1 + 9212 28632 5639 5644 11433 11433 0.014497026618755626 FSLWSYKQVEW 11 Unmodified _FSLWSYKQVEW_ 0 0 0 REV__LTR86C_dup181|chrX:15743777-15744334:-|1.2649482969725645|0.0290274225459988|5.45|151.0|27|2|anti-sense REV__LTR86C_dup181|chrX:15743777-15744334:-|1.2649482969725645|0.0290274225459988|5.45|151.0|27|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 491.79638671875 3 491.578477 1471.7136 0.22888 0.00011251 -0.17221 -8.4654E-05 0.056673 2.7859E-05 491.57835059663904 60.302 0.48141 63.819 63.538 64.019 3.5169 56 41 2 0 0 0 22.551 1 13202 13202 4.1166 1.6818 1 123430 + 9213 31031 5640 5645 11434 11434 -0.003386867139397509 FSLYCLQFQ 9 Unmodified _FSLYCLQFQ_ 0 0 0 REV__L1MD2_dup9505|chr17:47166053-47166865:-|2.7802545938538743|0.0369505948811425|6.23|151.0|23|3|sense REV__L1MD2_dup9505|chr17:47166053-47166865:-|2.7802545938538743|0.0369505948811425|6.23|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7753295898438 2 574.775885 1147.53722 -0.3846 -0.00022106 -0.086001 -4.9431E-05 -0.47061 -0.00027049 574.7758093326491 16.731 0.53885 20.092 19.96 20.499 3.3619 85 59 2 0 0 0 0.49026 1 1105 1105 1.6526 0 1 53677 + 9214 27453 5641 5646 11435 11435 -0.030650191487211487 FSMRAGYS 8 Unmodified _FSMRAGYS_ 0 0 0 L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|3|1|sense L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|3|1|sense L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 459.71051025390625 2 459.710545 917.406537 0.20152 9.2639E-05 0.040965 1.8832E-05 0.24248 0.00011147 459.7106170408596 96.606 1.3609 100.38 100.1 101.46 3.7767 433 186 3 0 0 0 0.82752 1 24062 24062 5.2307 2.3415 1 9390200 9215 11624 5642 5647 11436 11436 -0.05546990076891234 FSNEDIYT 8 Unmodified _FSNEDIYT_ 0 0 0 L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|177|3|sense L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|177|3|sense L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|177|3|sense MSMS UPN47_class_I_Rep_1 2 494.7351379394531 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 59.63 1 63.028 62.528 63.528 3.3982 0 0 0 0.40604 1 13861 13861 2.5775 0.27475 1 9216 14879 5643 5648 11437 11437 -0.07567094852697664 FSNTALVIFT 10 Unmodified _FSNTALVIFT_ 0 0 0 REV__L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|47|3|anti-sense REV__L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.8018188476562 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.227 1 64.705 64.205 65.205 3.4785 0 0 0 0.53105 1 13584 13584 10.8 0 1 + 9217 28609 5644 5649 11438 11438 0.040028962745282115 FSNTQTLFK 9 Unmodified _FSNTQTLFK_ 0 0 0 Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|28|2|anti-sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|28|2|anti-sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|28|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 543.2850952148438 2 543.284931 1084.55531 0.42352 0.00023009 -0.16312 -8.862E-05 0.2604 0.00014147 543.284783007111 42.419 1.134 45.927 45.59 46.724 3.5079 255 96 4 0 0 0 0.21414 1 7942 7942 19.362 3.2128 1 1089900 9218 508 5645 5650 11439 11439 0.016414390976706272 FSPFPRVCY 9 Unmodified _FSPFPRVCY_ 0 0 0 L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|41|2|anti-sense L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|41|2|anti-sense L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_3 4 558.2716674804688 2 558.27077 1114.52699 NaN NaN NaN NaN NaN NaN NaN 48.393 1 51.63 51.13 52.13 3.2375 0 0 0 0.38784 1 10517 10517 3.5965 0.31518 1 9219 9050 5646 5651 11440 11440 -0.025695820832652316 FSPFTFHFIM 10 Unmodified _FSPFTFHFIM_ 0 0 0 L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|277|3|anti-sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|277|3|anti-sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|277|3|anti-sense MSMS UPN48_class_I_Rep_2 6 637.3084106445312 2 637.307352 1272.60015 NaN NaN NaN NaN NaN NaN NaN 39.995 1 43.736 43.236 44.236 3.7413 0 0 0 0.53105 1 7158 7158 1.6526 0 1 9220 9358 5647 5652 11441 11441 -0.025244533606382902 FSPHHFQVF 9 Unmodified _FSPHHFQVF_ 0 0 0 L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|186|1|anti-sense L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|186|1|anti-sense L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|186|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.2809448242188 2 573.279983 1144.54541 0.51294 0.00029406 0.18403 0.0001055 0.69696 0.00039955 573.2800368576835 77.28 0.79124 80.881 80.602 81.394 3.6016 141 70 3 0 0 0 0.21527 1 18194 18194 19.257 0 1 400290 9221 14980 5648 5653 11442 11442 -0.02107704117065623 FSPILDGRLFC 11 Unmodified _FSPILDGRLFC_ 0 0 0 REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|160|1|anti-sense REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|160|1|anti-sense MSMS UPN48_class_I_Rep_2 6 634.327392578125 2 634.328816 1266.64308 NaN NaN NaN NaN NaN NaN NaN 45.839 1 49.596 49.096 50.096 3.7579 0 0 0 0.38417 1 8891 8891 1.1933 0 1 + 9222 23705 5649 5654 11443 11443 0.020423166967702855 FSPPQLELPF 10 Unmodified _FSPPQLELPF_ 0 0 0 REV__L1ME4b_dup13244|chr10:74018703-74019189:-|1.1376710874475524|0.041938796915399|4.76|151.0|28|2|anti-sense REV__L1ME4b_dup13244|chr10:74018703-74019189:-|1.1376710874475524|0.041938796915399|4.76|151.0|28|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.8113403320312 2 587.810782 1173.60701 0.47446 0.00027889 0.14832 8.7182E-05 0.62278 0.00036608 587.8107305521256 72.564 0.58025 76.129 75.761 76.341 3.5645 112 51 3 0 0 0 0.48573 1 16898 16898 13.042 1.4022 1 286400 + 9223 28253 5650 5655 11444 11444 0.027151827915531612 FSPQEKLFY 9 Unmodified _FSPQEKLFY_ 0 0 0 L1MC2_dup2865|chr8:47526732-47527619:+|1.6260910206887966|0.1175526460543762|3.79|151.0|7|1|sense L1MC2_dup2865|chr8:47526732-47527619:+|1.6260910206887966|0.1175526460543762|3.79|151.0|7|1|sense L1MC2_dup2865|chr8:47526732-47527619:+|1.6260910206887966|0.1175526460543762|3.79|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 579.7926635742188 2 579.795132 1157.57571 NaN NaN NaN NaN NaN NaN NaN 35.221 1 38.894 38.394 39.394 3.6735 0 0 0 0.34878 1 5777 5777 8.1555 0.8663 1 9224 11243 5651 5656 11445 11445 0.0032260975747249176 FSPSTHTPLNT 11 Unmodified _FSPSTHTPLNT_ 0 0 0 MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|30|1|anti-sense MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|30|1|anti-sense MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|30|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 601.2950439453125 2 601.296027 1200.5775 0.43484 0.00026147 -0.24058 -0.00014466 0.19426 0.00011681 601.2958944854887 59.885 0.24383 63.283 63.2 63.444 3.3982 20 14 2 0 0 0 0.66059 1 13913 13913 2.2828 0 1 107690 9225 15875 5652 5657 11446 11446 -0.014763812245746522 FSPVLVVHC 9 Unmodified _FSPVLVVHC_ 0 0 0 REV__L1P2_dup1239|chr12:27041224-27043552:+|2.2384998715057183|0.2307544213872207|3.28|151.0|138|3|anti-sense REV__L1P2_dup1239|chr12:27041224-27043552:+|2.2384998715057183|0.2307544213872207|3.28|151.0|138|3|anti-sense MSMS UPN47_class_I_Rep_1 2 500.76824951171875 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 37.76 1 41.426 40.926 41.926 3.6652 0 0 0 0.38299 1 7203 7203 4.756 0 1 + 9226 28836 5653 5658 11447 11447 0.021393194050574493 FSQLYNIT 8 Unmodified _FSQLYNIT_ 0 0 0 REV__BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|57|1|anti-sense REV__BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2525939941406 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 71.754 1 75.304 74.804 75.804 3.5505 0 0 0 0.39436 1 16763 16763 10.074 0 1 + 9227 17253 5654 5659 11448 11448 -0.0012192133945063688 FSQLYNIT 8 Unmodified _FSQLYNIT_ 0 0 0 REV__BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|57|1|anti-sense REV__BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|57|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.2535095214844 2 493.2531 984.491647 0.30138 0.00014866 -0.010712 -5.2837E-06 0.29067 0.00014337 493.25302664622495 71.723 0.5875 75.25 74.971 75.558 3.5266 78 56 2 0 0 0 0.82752 1 16687 16687 6.7232 0 1 191080 + 9228 17253 5654 5659 11449 11449 -0.0012192133945063688 FSQPPNVL 8 Unmodified _FSQPPNVL_ 0 0 0 L1MEg_dup921|chr1:207333204-207335473:+|2.0179635754211365|0.1992568072294673|3.34|151.0|136|2|anti-sense L1MEg_dup921|chr1:207333204-207335473:+|2.0179635754211365|0.1992568072294673|3.34|151.0|136|2|anti-sense L1MEg_dup921|chr1:207333204-207335473:+|2.0179635754211365|0.1992568072294673|3.34|151.0|136|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.2420654296875 2 451.242535 900.470518 -0.34746 -0.00015679 -0.10058 -4.5385E-05 -0.44803 -0.00020217 451.2425061043318 39.621 0.59479 43.288 43.146 43.741 3.6668 65 44 2 0 0 0 0.82752 1 7798 7798 7.2892 1.0834 1 61648 9229 13434 5655 5660 11450 11450 0.016301133517231392 FSQYVALST 9 Unmodified _FSQYVALST_ 0 0 0 REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|217|1|anti-sense REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|217|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.2586669921875 2 508.258382 1014.50221 0.37622 0.00019122 -0.043827 -2.2275E-05 0.3324 0.00016894 508.7599372661229 61.81 0.40981 65.278 65.11 65.52 3.4678 48 37 2 0 0 0 0.23293 1 13814 13814 18.146 0 1 153580 + 9230 30270 5656 5661 11451 11451 -0.004459386850044211 FSQYVALST 9 Unmodified _FSQYVALST_ 0 0 0 REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|217|1|anti-sense REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|217|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.2588195800781 2 508.258382 1014.50221 0.27897 0.00014179 -0.10983 -5.582E-05 0.16914 8.5968E-05 508.25829529510906 61.67 0.42645 65.181 64.866 65.293 3.5104 37 35 2 0 0 0 0.23293 1 13612 13612 18.146 0 1 97410 + 9231 30270 5656 5661 11452 11452 -0.004459386850044211 FSRFHMHFRWP 11 Unmodified _FSRFHMHFRWP_ 0 0 0 REV__L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|29|2|anti-sense REV__L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 516.5875244140625 3 516.587424 1546.74044 NaN NaN NaN NaN NaN NaN NaN 27.574 1 27.574 27.074 28.074 0 0 0 0 0.38417 1 4111 4111 0.094841 0 1 + 9232 24286 5657 5662 11453 11453 -0.011058565837402057 FSRGLPASVL 10 Unmodified _FSRGLPASVL_ 0 0 0 REV__L1PA7_dup1600|chr2:171759467-171761189:-|4.436725861898866|0.2208506045043274|4.33|151.0|3|1|sense REV__L1PA7_dup1600|chr2:171759467-171761189:-|4.436725861898866|0.2208506045043274|4.33|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.8030395507812 2 523.803291 1045.59203 0.43058 0.00022554 -0.51997 -0.00027236 -0.089387 -4.6821E-05 523.8028673478673 63.42 0.6967 66.894 66.463 67.16 3.4738 110 58 3 0 0 0 0.36548 1 14248 14248 22.658 0.91144 1 396290 + 9233 30032 5658 5663 11454 11454 0.07105735714230832 FSRRDHRR 8 Unmodified _FSRRDHRR_ 0 0 0 ENSG00000104856.14,RELB,chr19,+,I4.1,45009823,45011935|56|8.97|2|intron;ENSG00000104856.14,RELB,chr19,+,I4.1,45009823,45011935|56|8.97|4|intron;ENSG00000104856.14,RELB,chr19,+,I4.1,45009823,45011935|56|8.97|3|intron;ENSG00000104856.14,RELB,chr19,+,I4.1,45009823,45011935|56|8.97|1|intron ENSG00000104856.14,RELB,chr19,+,I4.1,45009823,45011935|56|8.97|2|intron ENSG00000104856.14,RELB,chr19,+,I4.1,45009823,45011935|56|8.97|2|intron MSMS UPN46_class_I_Rep_3 1 565.31005859375 2 565.307929 1128.60131 NaN NaN NaN NaN NaN NaN NaN 24.514 1 24.514 24.014 25.014 0 0 0 0 0.40753 1 3234 3234 0.6015 0.076735 1 9234 1709 5659 5664 11455 11455 0.04214941843110864 FSRRKKKGS 9 Unmodified _FSRRKKKGS_ 0 0 0 ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 ENST00000343889.8_1_1:2411150-2434522:+|nuORF ENST00000343889.8_1_1:2411150-2434522:+|nuORF MSMS UPN47_class_I_Rep_3 4 547.3328247070312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 86.065 1 89.436 88.936 89.936 3.3716 0 0 0 0.39518 1 21569 21569 1.8442 1.1539 1 9235 3546 5660 5665 11456 11456 0.10899051448268438 FSRRKKKGS 9 Unmodified _FSRRKKKGS_ 0 0 0 ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 ENST00000343889.8_1_1:2411150-2434522:+|nuORF ENST00000343889.8_1_1:2411150-2434522:+|nuORF MSMS UPN47_class_I_Rep_3 4 547.3453979492188 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 102.73 1 106.23 105.73 106.73 3.5057 0 0 0 0.3967 1 25238 25238 1.4819 0.79152 1 9236 3546 5660 5665 11457 11457 0.10899051448268438 FSRRKKKGS 9 Unmodified _FSRRKKKGS_ 0 0 0 ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 ENST00000343889.8_1_1:2411150-2434522:+|nuORF ENST00000343889.8_1_1:2411150-2434522:+|nuORF MSMS UPN47_class_I_Rep_3 4 547.3453979492188 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 102.86 1 106.37 105.87 106.87 3.5057 0 0 0 0.3967 1 25265 25265 1.4819 0.68827 1 9237 3546 5660 5665 11458 11458 0.10899051448268438 FSRWEKGAI 9 Unmodified _FSRWEKGAI_ 0 0 0 REV__L1PA5_dup3202|chr4:150834835-150838887:-|3.202240591615562|0.1108310988139048|4.85|151.0|166|1|anti-sense REV__L1PA5_dup3202|chr4:150834835-150838887:-|3.202240591615562|0.1108310988139048|4.85|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 547.7948608398438 2 547.293091 1092.57163 0.34081 0.00018652 -0.95124 -0.00052061 -0.61043 -0.00033409 547.2926612172187 55.738 0.47784 59.293 59.062 59.54 3.5554 55 33 3 0 0 0 0.37599 1 11872 11872 9.3831 9.3831 1 131990 + 9238 29750 5661 5666 11459 11459 0.029045650544276214 FSRYRIPDW 9 Unmodified _FSRYRIPDW_ 0 0 0 L1MEg_dup12510|chr15:101211338-101211926:+|1.0446080911846505|0.0208340837319628|5.65|151.0|19|1|anti-sense L1MEg_dup12510|chr15:101211338-101211926:+|1.0446080911846505|0.0208340837319628|5.65|151.0|19|1|anti-sense L1MEg_dup12510|chr15:101211338-101211926:+|1.0446080911846505|0.0208340837319628|5.65|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_1 5 620.65087890625 2 620.317097 1238.61964 NaN NaN NaN NaN NaN NaN NaN 38.739 1 42.243 41.743 42.743 3.5048 0 0 0 0.39518 1 6750 6750 1.8442 0 1 9239 13359 5662 5667 11460 11460 0.00987638974447691 FSSCMKMC 8 Unmodified _FSSCMKMC_ 0 0 0 REV__L1M2_dup7324|chr13:49164871-49166809:-|1.8632098958411731|0.3999969272436301|2.22|151.0|104|3|anti-sense REV__L1M2_dup7324|chr13:49164871-49166809:-|1.8632098958411731|0.3999969272436301|2.22|151.0|104|3|anti-sense MSMS UPN46_class_I_Rep_3 1 468.67755126953125 2 468.675945 935.337337 NaN NaN NaN NaN NaN NaN NaN 64.708 1 64.708 64.208 65.208 0 0 0 0 0.40746 1 14582 14582 0.69038 0 1 + 9240 24231 5663 5668 11461 11461 -0.13291856683963488 FSSDFTLKL 9 Unmodified _FSSDFTLKL_ 0 0 0 REV__ENST00000423609.1_1_X:49397616-49397697:-|nuORF REV__ENST00000423609.1_1_X:49397616-49397697:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 529.2823486328125 2 529.281857 1056.54916 0.41584 0.0002201 -0.031624 -1.6738E-05 0.38422 0.00020336 529.2817465562613 65.262 0.61077 68.717 68.365 68.975 3.4541 101 43 3 0 0 0 0.023676 4 14855 14759;14774;14816;14855 61.09 0 1 389260 + 9241 21248 5664 5669 11462;11463;11464;11465 11465 0.02314920866160719 FSSDFTLKL 9 Unmodified _FSSDFTLKL_ 0 0 0 REV__ENST00000423609.1_1_X:49397616-49397697:-|nuORF REV__ENST00000423609.1_1_X:49397616-49397697:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 529.2822265625 2 529.281857 1056.54916 0.44678 0.00023647 -0.20399 -0.00010797 0.24278 0.0001285 529.281680187698 65.152 0.70338 68.631 68.179 68.883 3.4792 90 48 2 0 0 0 0.026395 3 14690 14690;14729;14768 59.368 0 1 398780 + 9242 21248 5664 5669 11466;11467;11468 11466 0.02314920866160719 FSSDFTLKL 9 Unmodified _FSSDFTLKL_ 0 0 0 REV__ENST00000423609.1_1_X:49397616-49397697:-|nuORF REV__ENST00000423609.1_1_X:49397616-49397697:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 529.2816772460938 2 529.281857 1056.54916 0.51483 0.00027249 -0.05516 -2.9195E-05 0.45967 0.0002433 529.2817977288653 64.908 0.66507 68.416 68.102 68.767 3.5077 112 49 3 0 0 0 0.048662 3 14626 14581;14626;14667 49.554 0 1 371490 + 9243 21248 5664 5669 11469;11470;11471 11470 0.02314920866160719 FSSHKRCLR 9 Unmodified _FSSHKRCLR_ 0 0 0 REV__MSTA_dup13073|chr10:75583234-75583640:-|2.743825498635745|0.0094347973246174|8.18|148.0|23|3|anti-sense REV__MSTA_dup13073|chr10:75583234-75583640:-|2.743825498635745|0.0094347973246174|8.18|148.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.787353515625 2 567.303467 1132.59238 0.49255 0.00027942 -0.85291 -0.00048386 -0.36036 -0.00020443 567.3028045223717 66.349 0.26318 69.857 69.757 70.02 3.5077 21 20 2 0 0 0 0.28552 1 15070 15070 14.838 0 1 61030 + 9244 31841 5665 5670 11472 11472 0.03138832162426297 FSSHKRCLR 9 Unmodified _FSSHKRCLR_ 0 0 0 REV__MSTA_dup13073|chr10:75583234-75583640:-|2.743825498635745|0.0094347973246174|8.18|148.0|23|3|anti-sense REV__MSTA_dup13073|chr10:75583234-75583640:-|2.743825498635745|0.0094347973246174|8.18|148.0|23|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 567.303467 1132.59238 0.51055 0.00028964 -0.67248 -0.0003815 -0.16194 -9.1867E-05 567.3028119206241 66.298 0.2859 69.785 69.54 69.826 3.4866 -0.036318 5.9224E-05 NaN 14.838 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 67717 + 9245 31841 5665 5670 0.03138832162426297 FSSKDIFFY 9 Unmodified _FSSKDIFFY_ 0 0 0 L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 577.2821044921875 2 577.281857 1152.54916 0.47277 0.00027292 0.060351 3.4839E-05 0.53312 0.00030776 577.2817552643952 76.531 0.41103 80.143 80.007 80.418 3.6116 85 41 3 0 0 0 0.24936 1 18044 18044 17.113 1.2657 1 552420 9246 9087 5666 5671 11473 11473 -0.021010791338540002 FSSKDIFFY 9 Unmodified _FSSKDIFFY_ 0 0 0 L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 577.281857 1152.54916 0.4362 0.00025181 0.72504 0.00041856 1.1612 0.00067037 577.282058464096 76.806 0.041039 80.316 80.29 80.331 3.5102 0.13066 0.00079736 NaN 17.113 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 36843 9247 9087 5666 5671 -0.021010791338540002 FSSKDIFFY 9 Unmodified _FSSKDIFFY_ 0 0 0 L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 577.281857 1152.54916 0.47277 0.00027292 0.060351 3.4839E-05 0.53312 0.00030776 577.2817552643952 76.531 0.41103 80.143 80.007 80.418 3.6116 -0.042907 2.993E-05 NaN 17.113 85 41 3 NaN NaN NaN NaN 0 NaN NaN 0 552420 9248 9087 5666 5671 -0.021010791338540002 FSSKDIFFY 9 Unmodified _FSSKDIFFY_ 0 0 0 L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|28|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 577.281857 1152.54916 0.52418 0.0003026 -0.074509 -4.3013E-05 0.44967 0.00025959 577.2818255162363 76.515 0.12523 80.098 80.05 80.176 3.5831 -0.08775 -0.00012577 NaN 17.113 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 111260 9249 9087 5666 5671 -0.021010791338540002 FSSKVIWSWT 10 Unmodified _FSSKVIWSWT_ 0 0 0 L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|186|1|anti-sense L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|186|1|anti-sense L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|186|1|anti-sense MSMS UPN48_class_I_Rep_1 5 620.8240356445312 2 620.821681 1239.62881 NaN NaN NaN NaN NaN NaN NaN 38.061 1 41.567 41.067 42.067 3.5052 0 0 0 0.53105 1 6546 6546 1.6526 0.32309 1 9250 9818 5667 5672 11474 11474 0.018579875401201207 FSSKVPGEGL 10 Unmodified _FSSKVPGEGL_ 0 0 0 MLT1D_dup15342|chr13:49172364-49172836:-|2.2396185659213868|0.425076516081139|2.4|151.0|12|2|sense MLT1D_dup15342|chr13:49172364-49172836:-|2.2396185659213868|0.425076516081139|2.4|151.0|12|2|sense MLT1D_dup15342|chr13:49172364-49172836:-|2.2396185659213868|0.425076516081139|2.4|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.77197265625 2 510.771657 1019.52876 0.25874 0.00013216 -0.22493 -0.00011489 0.033805 1.7267E-05 510.7714791957259 77.611 0.65173 81.04 80.752 81.403 3.4289 175 63 3 0 0 0 0.4561 1 19354 19354 15.248 3.0078 1 589330 9251 16338 5668 5673 11475 11475 0.019777502063448082 FSSKVPGEGL 10 Unmodified _FSSKVPGEGL_ 0 0 0 MLT1D_dup15342|chr13:49172364-49172836:-|2.2396185659213868|0.425076516081139|2.4|151.0|12|2|sense MLT1D_dup15342|chr13:49172364-49172836:-|2.2396185659213868|0.425076516081139|2.4|151.0|12|2|sense MLT1D_dup15342|chr13:49172364-49172836:-|2.2396185659213868|0.425076516081139|2.4|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.7718505859375 2 510.771657 1019.52876 0.28731 0.00014675 -0.27449 -0.0001402 0.012829 6.5526E-06 510.77145096419446 77.855 0.66341 81.137 80.797 81.46 3.2816 195 72 3 0 0 0 0.32646 1 19469 19469 26.268 7.0112 1 607120 9252 16338 5668 5673 11476 11476 0.019777502063448082 FSSPFYCT 8 Unmodified _FSSPFYCT_ 0 0 0 REV__L1MB7_dup8928|chr7:99117960-99118811:+|1.954608110466124|0.3020844994278821|2.69|151.0|35|1|anti-sense REV__L1MB7_dup8928|chr7:99117960-99118811:+|1.954608110466124|0.3020844994278821|2.69|151.0|35|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 476.1980895996094 2 476.199479 950.384405 -0.80255 -0.00038217 -1.5218 -0.00072467 -2.3243 -0.0011068 476.19843076203114 15.59 0.51318 18.956 18.792 19.305 3.3659 112 56 3 0 0 0 0.82752 1 858 858 2.3027 0 1 43786 + 9253 26324 5669 5674 11477 11477 -0.0927721454532957 FSSPRKKGQP 10 Unmodified _FSSPRKKGQP_ 0 0 0 REV__ENSG00000135272.12,MDFIC,chr7,+,I7.1,114980085,115014462|23|9.54|1|intron REV__ENSG00000135272.12,MDFIC,chr7,+,I7.1,114980085,115014462|23|9.54|1|intron MSMS UPN48_class_I_Rep_2 6 566.3159790039062 2 566.317097 1130.61964 NaN NaN NaN NaN NaN NaN NaN 72.781 1 76.346 75.846 76.846 3.5645 0 0 0 0.53105 1 17055 17055 1.4819 0.15237 1 + 9254 19129 5670 5675 11478 11478 0.05955638974455724 FSSPVVSIY 9 Unmodified _FSSPVVSIY_ 0 0 0 REV__nc|ENSG00000021645|Q9Y4C0-3|NRXN3 REV__nc|ENSG00000021645|Q9Y4C0-3|NRXN3 MSMS UPN47_class_I_Rep_2 3 499.7611389160156 2 499.7633 997.512048 NaN NaN NaN NaN NaN NaN NaN 27.616 1 31.114 30.614 31.614 3.4986 0 0 0 0.38478 1 4172 4172 4.3292 0 1 + 9255 17607 5671 5676 11479 11479 0.01319249320374638 FSSVKDQKF 9 Unmodified _FSSVKDQKF_ 0 0 0 REV__MLT1J_dup3835|chr4:48200518-48201029:+|1.7471366560861208|0.005096344059492|8.42|151.0|23|2|anti-sense REV__MLT1J_dup3835|chr4:48200518-48201029:+|1.7471366560861208|0.005096344059492|8.42|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 543.2847900390625 2 543.284931 1084.55531 0.42352 0.00023009 -0.16312 -8.862E-05 0.2604 0.00014147 543.284783007111 42.419 1.134 45.927 45.59 46.724 3.5079 255 96 4 0 0 0 0.16559 1 7782 7782 24.021 0 1 1089900 + 9256 31777 5672 5677 11480 11480 0.0164143909764789 FSSVKDQKF 9 Unmodified _FSSVKDQKF_ 0 0 0 REV__MLT1J_dup3835|chr4:48200518-48201029:+|1.7471366560861208|0.005096344059492|8.42|151.0|23|2|anti-sense REV__MLT1J_dup3835|chr4:48200518-48201029:+|1.7471366560861208|0.005096344059492|8.42|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 543.2849731445312 2 543.284931 1084.55531 0.41841 0.00022731 -0.13378 -7.2682E-05 0.28463 0.00015463 543.2847952421597 42.032 1.3945 45.789 45.41 46.805 3.7579 359 133 4 0 0 0 0.23293 1 7677 7677 18.146 0 1 1743100 + 9257 31777 5672 5677 11481 11481 0.0164143909764789 FSTAAAHLTF 10 Unmodified _FSTAAAHLTF_ 0 0 0 L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|42|1|anti-sense L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|42|1|anti-sense L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|42|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 533.2723388671875 2 533.271824 1064.5291 0.32915 0.00017553 -0.036459 -1.9443E-05 0.2927 0.00015609 533.271649038645 49.277 0.74079 52.801 52.494 53.235 3.5243 122 52 3 0 0 0 0.46161 2 10054 9877;10054 14.838 0 1 402520 9258 10646 5673 5678 11482;11483 11483 -0.0005883007383999939 FSTGNFNVL 9 Unmodified _FSTGNFNVL_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_1 5 499.7508850097656 2 499.750724 997.486896 0.23648 0.00011818 0.074872 3.7417E-05 0.31135 0.0001556 499.7507716799796 69.414 0.49054 72.869 72.623 73.114 3.4548 53 35 2 0 0 0 0.19147 1 16103 16103 21.537 1.0834 1 131040 9259 1030 5674 5679 11484 11484 -0.011948054821914411 FSTGNFNVL 9 Unmodified _FSTGNFNVL_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 499.750724 997.486896 0.29052 0.00014519 0.17487 8.7391E-05 0.46538 0.00023258 499.75078061399375 69.213 0.25185 72.735 72.533 72.784 3.5216 -0.043138 0.00014393 NaN 21.537 32 19 3 NaN NaN NaN NaN 0 NaN NaN 0 105950 9260 1030 5674 5679 -0.011948054821914411 FSTGNFNVL 9 Unmodified _FSTGNFNVL_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 499.750724 997.486896 0.31933 0.00015958 -0.096064 -4.8008E-05 0.22326 0.00011158 499.7506337044975 69.22 0.5604 72.73 72.457 73.017 3.51 -0.047675 -0.00012687 NaN 21.537 66 42 2 NaN NaN NaN NaN 0 NaN NaN 0 124590 9261 1030 5674 5679 -0.011948054821914411 FSTIKMVYF 9 Unmodified _FSTIKMVYF_ 0 0 0 REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|134|3|anti-sense REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|134|3|anti-sense MSMS UPN48_class_I_Rep_1 5 568.2944946289062 2 568.296453 1134.57835 NaN NaN NaN NaN NaN NaN NaN 67.789 1 71.241 70.741 71.741 3.4517 0 0 0 0.38073 1 15608 15608 5.2969 0.96765 1 + 9262 32558 5675 5680 11485 11485 0.01644741890777368 FSTLIHFVSA 10 Unmodified _FSTLIHFVSA_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|78|2|anti-sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|78|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 561.3028564453125 2 561.303124 1120.5917 0.53558 0.00030062 -0.22844 -0.00012823 0.30714 0.0001724 561.3029157217383 66.159 1.1348 69.61 69.115 70.25 3.4516 181 74 3 0 0 0 0.12308 2 15037 15037;15194 74.929 9.694 1 924460 + 9263 30324 5676 5681 11486;11487 11486 0.036223159943801875 FSTLIHFVSA 10 Unmodified _FSTLIHFVSA_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|78|2|anti-sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|78|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.30322265625 2 561.303124 1120.5917 0.46352 0.00026018 -0.17676 -9.9215E-05 0.28677 0.00016096 561.3029264781825 65.875 1.0686 69.383 68.952 70.02 3.5077 222 75 4 0 0 0 0.14253 2 14892 14892;14935 68.081 2.8457 1 1403100 + 9264 30324 5676 5681 11488;11489 11488 0.036223159943801875 FSTLLIQYH 9 Unmodified _FSTLLIQYH_ 0 0 0 REV__nc|ENSG00000177663|Q96F46-2|IL17RA REV__nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS UPN48_class_I_Rep_1 5 561.3031616210938 2 561.303124 1120.5917 0.53558 0.00030062 -0.22844 -0.00012823 0.30714 0.0001724 561.3029157217383 66.159 1.1348 69.61 69.115 70.25 3.4516 181 74 3 0 0 0 0.027484 4 15076 14984;14994;15076;15231 58.679 9.8246 1 924460 + 9265 20626 5677 5682 11490;11491;11492;11493 11492 0.036223159943801875 FSTLLIQYH 9 Unmodified _FSTLLIQYH_ 0 0 0 REV__nc|ENSG00000177663|Q96F46-2|IL17RA REV__nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS UPN48_class_I_Rep_2 6 561.3031616210938 2 561.303124 1120.5917 0.51784 0.00029067 -0.20822 -0.00011687 0.30962 0.00017379 561.3029284909707 65.981 1.0761 69.468 69.052 70.128 3.4866 208 76 4 0 0 0 0.027484 3 15053 15053;15134;15172 58.679 10.728 1 1854200 + 9266 20626 5677 5682 11494;11495;11496 11494 0.036223159943801875 FSTLLIQYH 9 Unmodified _FSTLLIQYH_ 0 0 0 REV__nc|ENSG00000177663|Q96F46-2|IL17RA REV__nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS UPN48_class_I_Rep_3 7 561.30322265625 2 561.303124 1120.5917 0.46352 0.00026018 -0.17676 -9.9215E-05 0.28677 0.00016096 561.3029264781825 65.875 1.0686 69.383 68.952 70.02 3.5077 222 75 4 0 0 0 0.047711 2 15056 15018;15056 49.933 19.296 1 1403100 + 9267 20626 5677 5682 11497;11498 11498 0.036223159943801875 FSTLLKSFF 9 Unmodified _FSTLLKSFF_ 0 0 0 REV__L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|300|2|anti-sense REV__L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|300|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.2539672851562 2 545.302593 1088.59063 0.35808 0.00019526 -1.1098 -0.00060519 -0.75174 -0.00040993 545.3020646672894 60.479 0.14315 63.644 63.59 63.734 3.1651 11 9 2 0 0 0 0.099402 1 14215 14215 18.135 1.1927 1 67582 + 9268 29603 5678 5683 11499 11499 0.049881016254630595 FSTLSHLFATH 11 Unmodified _FSTLSHLFATH_ 0 0 0 L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|72|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|72|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|72|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 630.8225708007812 2 630.822212 1259.62987 0.62733 0.00039573 -0.2173 -0.00013708 0.41003 0.00025866 630.8219622287647 58.382 0.95824 58.382 58.025 58.983 0 239 108 3 0 0 0 0.59712 1 12771 12771 5.2969 1.3525 1 521840 9269 9387 5679 5684 11500 11500 0.010442019090305621 FSTLSYKTF 9 Unmodified _FSTLSYKTF_ 0 0 0 REV__L1MC4_dup5008|chr3:123222496-123223061:-|1.8679052340207103|0.0808559912146953|4.53|151.0|15|2|sense REV__L1MC4_dup5008|chr3:123222496-123223061:-|1.8679052340207103|0.0808559912146953|4.53|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 547.2933349609375 2 547.281857 1092.54916 NaN NaN NaN NaN NaN NaN NaN 55.8 1 59.356 58.856 59.856 3.5559 0 0 0 0.35339 1 11926 11926 7.9102 1.187 1 + 9270 26918 5680 5685 11501 11501 0.006589208661353041 FSTLSYYFVI 10 Unmodified _FSTLSYYFVI_ 0 0 0 REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|391|3|anti-sense REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|391|3|anti-sense MSMS UPN48_class_I_Rep_1 5 620.316162109375 2 620.31844 1238.62233 NaN NaN NaN NaN NaN NaN NaN 38.438 1 41.943 41.443 42.443 3.5052 0 0 0 0.53105 1 6660 6660 1.6526 0.17072 1 + 9271 24972 5681 5686 11502 11502 0.012560495887328216 FSTVGESLLY 10 Unmodified _FSTVGESLLY_ 0 0 0 ENSG00000165553|ENST00000298352|NGB ENSG00000165553|ENST00000298352|NGB ENSG00000165553|ENST00000298352|NGB MULTI-MSMS UPN47_class_I_Rep_2 3 558.283935546875 2 558.284597 1114.55464 0.42271 0.00023599 -1.7117 -0.0009556 -1.289 -0.00071961 558.2833613743361 71.594 0.52677 74.884 74.666 75.193 3.2899 63 42 2 0 0 0 0.35076 2 17553 17553;17572 24.021 1.2843 1 84195 9272 4186 5682 5687 11503;11504 11503 0.0019459965797068435 FSTVGESLLY 10 Unmodified _FSTVGESLLY_ 0 0 0 ENSG00000165553|ENST00000298352|NGB ENSG00000165553|ENST00000298352|NGB ENSG00000165553|ENST00000298352|NGB MSMS UPN47_class_I_Rep_3 4 558.2926025390625 2 558.284597 1114.55464 NaN NaN NaN NaN NaN NaN NaN 71.943 1 75.162 74.662 75.662 3.2188 0 0 0 0.53105 1 17682 17682 13.906 0.86358 1 9273 4186 5682 5687 11505 11505 0.0019459965797068435 FSTVVHEHF 9 Unmodified _FSTVVHEHF_ 0 0 0 L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|64|2|anti-sense L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|64|2|anti-sense L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|64|2|anti-sense MSMS UPN48_class_I_Rep_1 5 551.7672729492188 2 551.769448 1101.52434 NaN NaN NaN NaN NaN NaN NaN 39.251 1 42.756 42.256 43.256 3.5048 0 0 0 0.39518 1 6907 6907 1.8442 0.36234 1 9274 11282 5683 5688 11506 11506 -0.022357142165674304 FSVAKGEPS 9 Unmodified _FSVAKGEPS_ 0 0 0 REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 460.7825012207031 2 461.23745 920.460347 0.15588 7.1897E-05 -0.1319 -6.0835E-05 0.023983 1.1062E-05 461.23729532016665 109.25 0.32793 112.78 112.63 112.96 3.5307 80 41 3 0 0 0 0.12321 1 26646 26646 3.9444 3.9444 1 4153000 + 9275 21947 5684 5689 11507 11507 -0.0030649437351257802 FSVAKGEPS 9 Unmodified _FSVAKGEPS_ 0 0 0 REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 461.23745 920.460347 0.18626 8.5908E-05 -0.2365 -0.00010908 -0.050245 -2.3175E-05 461.2373258158834 109.23 0.29179 112.91 112.8 113.09 3.6751 0.060377 -0.00016525 NaN 3.9444 65 40 2 NaN NaN NaN NaN 0 NaN NaN 0 3711300 + 9276 21947 5684 5689 -0.0030649437351257802 FSVEGQLEF 9 Unmodified _FSVEGQLEF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_1 5 528.2560424804688 2 528.25584 1054.49713 0.34941 0.00018458 0.17171 9.0706E-05 0.52112 0.00027528 528.2558704944804 72.981 1.1968 76.454 75.867 77.064 3.4732 243 100 4 0 0 0 4.4599E-05 4 17164 17041;17080;17119;17164 176.84 84.346 1 3050600 9277 1207;1424;6473 5685 5690 11508;11509;11510;11511 11511 -0.027942425476112476 FSVEGQLEF 9 Unmodified _FSVEGQLEF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_2 6 528.2560424804688 2 528.25584 1054.49713 0.40321 0.000213 0.072996 3.8561E-05 0.47621 0.00025156 528.2558079163078 72.73 1.504 76.295 75.772 77.276 3.5645 363 147 4 0 0 0 0.0069776 4 16997 16961;16997;17036;17260 118.07 56.711 1 1776100 9278 1207;1424;6473 5685 5690 11512;11513;11514;11515 11513 -0.027942425476112476 FSVEGQLEF 9 Unmodified _FSVEGQLEF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_3 7 528.256103515625 2 528.25584 1054.49713 0.52558 0.00027764 -0.018635 -9.8439E-06 0.50695 0.0002678 528.2557696545897 72.713 1.0958 76.25 75.735 76.83 3.5373 252 97 4 0 0 0 4.4599E-05 3 16963 16890;16925;16963 155.03 73.136 1 2525000 9279 1207;1424;6473 5685 5690 11516;11517;11518 11518 -0.027942425476112476 FSVEYGNVT 9 Unmodified _FSVEYGNVT_ 0 0 0 REV__L1MB7_dup18262|chr15:67110770-67111779:-|1.141937494162668|0.0285530357580461|5.32|151.0|18|2|sense REV__L1MB7_dup18262|chr15:67110770-67111779:-|1.141937494162668|0.0285530357580461|5.32|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 508.24017333984375 2 508.24019 1014.46583 NaN NaN NaN NaN NaN NaN NaN 72.991 1 76.464 75.964 76.964 3.4732 0 0 0 0.19137 1 17170 17170 16.942 0 1 + 9280 26180 5686 5691 11519 11519 -0.0408281558170529 FSVFLFWFF 9 Unmodified _FSVFLFWFF_ 0 0 0 L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|150|2|anti-sense L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|150|2|anti-sense L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|150|2|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3174438476562 2 620.315503 1238.61645 NaN NaN NaN NaN NaN NaN NaN 36.645 1 40.348 39.848 40.848 3.7021 0 0 0 0.39428 1 6181 6181 2.0598 0 1 9281 14416 5687 5692 11520 11520 0.006689958677270624 FSVFLFWFF 9 Unmodified _FSVFLFWFF_ 0 0 0 L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|150|2|anti-sense L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|150|2|anti-sense L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|150|2|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3156127929688 2 620.315503 1238.61645 NaN NaN NaN NaN NaN NaN NaN 37.412 1 41.114 40.614 41.614 3.7021 0 0 0 0.39428 1 6400 6400 2.0598 0.40713 1 9282 14416 5687 5692 11521 11521 0.006689958677270624 FSVFLNLNVG 10 Unmodified _FSVFLNLNVG_ 0 0 0 L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|334|3|anti-sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|229|1|anti-sense L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|334|3|anti-sense L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|334|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 555.303466796875 2 555.303124 1108.5917 0.36161 0.0002008 -0.59867 -0.00033244 -0.23706 -0.00013164 555.3030500351609 59.273 0.49242 62.797 62.412 62.905 3.5231 35 32 2 0 0 0 0.56078 1 12887 12887 3.2813 0 1 93209 9283 14348 5688 5693 11522 11522 0.041743159943507635 FSVGRWTLAG 10 Unmodified _FSVGRWTLAG_ 0 0 0 REV__L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|82|1|anti-sense REV__L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|82|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 547.2929077148438 2 547.293091 1092.57163 0.34081 0.00018652 -0.95124 -0.00052061 -0.61043 -0.00033409 547.2926612172187 55.738 0.47784 59.293 59.062 59.54 3.5554 55 33 3 0 0 0 0.51021 1 11846 11846 10.8 1.4164 1 131990 + 9284 30103 5689 5694 11523 11523 0.029045650544276214 FSVHIFQP 8 Unmodified _FSVHIFQP_ 0 0 0 L1PA16_dup12621|chr17:407418-407647:+|1.1627507993626758|0.0008482886877402|10.42|148.0|9|1|anti-sense L1PA16_dup12621|chr17:407418-407647:+|1.1627507993626758|0.0008482886877402|10.42|148.0|9|1|anti-sense L1PA16_dup12621|chr17:407418-407647:+|1.1627507993626758|0.0008482886877402|10.42|148.0|9|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.7582702636719 2 487.758352 973.502152 0.23139 0.00011286 0.38144 0.00018605 0.61283 0.00029891 487.75827131951974 56.697 0.64367 60.198 59.842 60.485 3.5014 79 54 2 0 0 0 0.82752 2 12175 12127;12175 23.148 1.1927 1 244840 9285 14044 5690 5695 11524;11525 11525 0.014341061056597937 FSVHIFQP 8 Unmodified _FSVHIFQP_ 0 0 0 L1PA16_dup12621|chr17:407418-407647:+|1.1627507993626758|0.0008482886877402|10.42|148.0|9|1|anti-sense L1PA16_dup12621|chr17:407418-407647:+|1.1627507993626758|0.0008482886877402|10.42|148.0|9|1|anti-sense L1PA16_dup12621|chr17:407418-407647:+|1.1627507993626758|0.0008482886877402|10.42|148.0|9|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7583923339844 2 487.758352 973.502152 0.36697 0.00017899 0.31365 0.00015299 0.68062 0.00033198 487.758266997617 56.613 0.6787 60.147 59.867 60.546 3.5333 97 63 2 0 0 0 0.82752 1 12118 12118 23.148 0 1 156600 9286 14044 5690 5695 11526 11526 0.014341061056597937 FSVMHFYF 8 Unmodified _FSVMHFYF_ 0 0 0 REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 539.2471923828125 2 539.246763 1076.47897 0.40693 0.00021944 0.33022 0.00017807 0.73715 0.00039751 539.2469323052873 72.981 0.69445 76.454 76.137 76.831 3.4732 79 55 2 0 0 0 0.82752 2 17129 17129;17168 34.187 7.8461 1 296060 + 9287 25770 5691 5696 11527;11528 11527 -0.05620656003316071 FSVMHFYF 8 Unmodified _FSVMHFYF_ 0 0 0 REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 539.2470703125 2 539.246763 1076.47897 0.46093 0.00024855 0.47918 0.0002584 0.94011 0.00050695 539.2469697684822 72.819 0.72865 76.384 76.048 76.777 3.5645 96 66 2 0 0 0 0.82752 2 17062 17062;17100 26.341 2.1313 1 163840 + 9288 25770 5691 5696 11529;11530 11529 -0.05620656003316071 FSVMHFYF 8 Unmodified _FSVMHFYF_ 0 0 0 REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 539.2470092773438 2 539.246763 1076.47897 0.61236 0.00033021 0.56791 0.00030624 1.1803 0.00063646 539.2470619597059 72.708 0.53675 76.245 76.033 76.569 3.5373 64 42 2 0 0 0 0.82752 2 16970 16970;17015 34.187 7.8461 1 231450 + 9289 25770 5691 5696 11531;11532 11531 -0.05620656003316071 FSVMHFYF 8 Unmodified _FSVMHFYF_ 0 0 0 REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 539.246763 1076.47897 0.40693 0.00021944 0.33022 0.00017807 0.73715 0.00039751 539.2469323052873 72.981 0.69445 76.454 76.137 76.831 3.4732 0.093027 -0.00012225 NaN 34.187 79 55 2 NaN NaN NaN NaN 0 NaN NaN 0 296060 + 9290 25770 5691 5696 -0.05620656003316071 FSVMHFYF 8 Unmodified _FSVMHFYF_ 0 0 0 REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 539.246763 1076.47897 0.46093 0.00024855 0.47918 0.0002584 0.94011 0.00050695 539.2469697684822 72.819 0.72865 76.384 76.048 76.777 3.5645 0.022708 3.8408E-05 NaN 34.187 96 66 2 NaN NaN NaN NaN 0 NaN NaN 0 163840 + 9291 25770 5691 5696 -0.05620656003316071 FSVMHFYF 8 Unmodified _FSVMHFYF_ 0 0 0 REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense REV__L1MB2_dup794|chr2:62928619-62929965:+|1.758451623463134|0.0849600161851073|4.37|151.0|79|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 539.246763 1076.47897 0.61236 0.00033021 0.56791 0.00030624 1.1803 0.00063646 539.2470619597059 72.708 0.53675 76.245 76.033 76.569 3.5373 -0.11574 0.00013409 NaN 34.187 64 42 2 NaN NaN NaN NaN 0 NaN NaN 0 231450 + 9292 25770 5691 5696 -0.05620656003316071 FSVSHLVW 8 Unmodified _FSVSHLVW_ 0 0 0 REV__L1M5_dup22017|chr6:166983737-166984209:+|1.3351671379733705|0.1574498761559262|3.08|149.0|33|3|anti-sense REV__L1M5_dup22017|chr6:166983737-166984209:+|1.3351671379733705|0.1574498761559262|3.08|149.0|33|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.7585144042969 2 487.758352 973.502152 0.14108 6.8815E-05 0.5016 0.00024466 0.64268 0.00031347 487.758414481362 56.572 0.59156 60.115 59.83 60.422 3.5427 70 55 2 0 0 0 0.82752 1 12065 12065 18.135 3.5533 1 198010 + 9293 24636 5692 5697 11533 11533 0.014341061056597937 FSVTYRYIG 9 Unmodified _FSVTYRYIG_ 0 0 0 REV__nc|ENSG00000186334|Q495N2-2|SLC36A3 REV__nc|ENSG00000186334|Q495N2-2|SLC36A3 MSMS UPN46_class_I_Rep_3 1 553.2891845703125 2 553.287474 1104.5604 NaN NaN NaN NaN NaN NaN NaN 41.69 1 41.69 41.19 42.19 0 0 0 0 0.37692 1 8193 8193 6.2058 0.44535 1 + 9294 32086 5693 5698 11534 11534 0.012297429602767807 FSVVSPSSF 9 Unmodified _FSVVSPSSF_ 0 0 0 ENSG00000116574|ENST00000366691|RHOU;nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42;nc|ENSG00000116574|Q7L0Q8-2|RHOU ENSG00000116574|ENST00000366691|RHOU ENSG00000116574|ENST00000366691|RHOU MULTI-MSMS UPN48_class_I_Rep_3 7 478.7403564453125 2 478.739825 955.465098 0.26621 0.00012745 -0.17143 -8.2069E-05 0.094786 4.5378E-05 478.73974412594254 66.795 0.53735 70.303 70.031 70.569 3.5077 46 32 2 0 0 0 0.30034 1 15147 15147 13.906 3.0821 1 116620 9295 2189 5694 5699 11535 11535 -0.01441610230756396 FSWFCHCCF 9 Unmodified _FSWFCHCCF_ 0 0 0 REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|187|1|anti-sense REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|187|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 590.2127685546875 2 590.214083 1178.41361 0.44011 0.00025976 -0.21129 -0.00012471 0.22882 0.00013505 590.2138130904601 78.057 0.47694 81.579 81.321 81.798 3.5221 75 53 2 0 0 0 0.48846 1 18606 18606 1.8442 0 1 126240 + 9296 29544 5695 5700 11536 11536 -0.16845716792340681 FSWHAHTHF 9 Unmodified _FSWHAHTHF_ 0 0 0 L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|33|3|anti-sense L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|33|3|anti-sense L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 585.2667236328125 2 585.267407 1168.52026 0.2457 0.0001438 -1.1457 -0.00067056 -0.90003 -0.00052676 585.2667305699841 50.318 0.87172 53.947 53.693 54.565 3.6285 79 39 3 0 0 0 0.48846 1 11188 11188 1.8442 0.19162 1 179980 9297 11435 5696 5701 11537 11537 -0.057257589196296976 FSWKQWQIA 9 Unmodified _FSWKQWQIA_ 0 0 0 REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|61|3|sense REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|61|3|sense MSMS UPN48_class_I_Rep_3 7 597.3048095703125 2 597.308741 1192.60293 NaN NaN NaN NaN NaN NaN NaN 36.291 1 39.958 39.458 40.458 3.6667 0 0 0 0.39428 1 5989 5989 2.0598 0.21551 1 + 9298 24617 5697 5702 11538 11538 0.014331380885096223 FSWRKKKR 8 Unmodified _FSWRKKKR_ 0 0 0 ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF MSMS UPN47_class_I_Rep_2 3 568.3489379882812 2 568.345992 1134.67743 NaN NaN NaN NaN NaN NaN NaN 113.31 1 116.83 116.33 117.33 3.5171 0 0 0 0.40753 1 27556 27556 0.6015 0.076735 1 9299 6861 5698 5703 11539 11539 0.11547945690540473 FSWTLPLSGQ 10 Unmodified _FSWTLPLSGQ_ 0 0 0 REV__ENSG00000137270|ENST00000259803|GCM1 REV__ENSG00000137270|ENST00000259803|GCM1 MSMS UPN48_class_I_Rep_1 5 568.295654296875 2 568.292756 1134.57096 NaN NaN NaN NaN NaN NaN NaN 68.002 1 71.454 70.954 71.954 3.4517 0 0 0 0.53105 1 15673 15673 5.7319 0 1 + 9300 19225 5699 5704 11540 11540 0.009057256147116277 FSYIMQSEI 9 Unmodified _FSYIMQSEI_ 0 0 0 REV__L1ME1_dup27745|chr17:61184255-61185117:+|1.4403741096769374|0.0163045294296196|6.47|151.0|47|2|anti-sense REV__L1ME1_dup27745|chr17:61184255-61185117:+|1.4403741096769374|0.0163045294296196|6.47|151.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.266357421875 2 559.26535 1116.51615 0.42109 0.0002355 -0.57285 -0.00032037 -0.15176 -8.4875E-05 559.265022664731 78.783 0.20653 82.229 82.137 82.344 3.4456 27 17 2 0 0 0 0.38714 1 19595 19595 8.7454 0.15213 1 49048 + 9301 27721 5700 5705 11541 11541 -0.037450292482162695 FSYIMQSEI 9 Unmodified _FSYIMQSEI_ 0 0 0 REV__L1ME1_dup27745|chr17:61184255-61185117:+|1.4403741096769374|0.0163045294296196|6.47|151.0|47|2|anti-sense REV__L1ME1_dup27745|chr17:61184255-61185117:+|1.4403741096769374|0.0163045294296196|6.47|151.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.2655029296875 2 559.26535 1116.51615 0.4419 0.00024714 -0.17589 -9.8369E-05 0.26601 0.00014877 559.265195543994 73.778 0.57648 77.083 76.684 77.261 3.3048 80 52 2 0 0 0 0.23293 1 18061 18061 18.146 1.9972 1 503000 + 9302 27721 5700 5705 11542 11542 -0.037450292482162695 FSYKTIVM 8 Unmodified _FSYKTIVM_ 0 0 0 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MSMS UPN48_class_I_Rep_1 5 494.7623291015625 2 494.762246 987.50994 NaN NaN NaN NaN NaN NaN NaN 54.648 1 58.162 57.662 58.662 3.5143 0 0 0 0.40292 1 11591 11591 6.7232 1.4925 1 9303 4782 5701 5706 11543 11543 0.015684973109273415 FSYKTIVM 8 Unmodified _FSYKTIVM_ 0 0 0 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MSMS UPN48_class_I_Rep_1 5 494.76226806640625 2 494.762246 987.50994 NaN NaN NaN NaN NaN NaN NaN 54.968 1 58.476 57.976 58.976 3.5082 0 0 0 0.40292 1 11689 11689 6.7232 1.4925 1 9304 4782 5701 5706 11544 11544 0.015684973109273415 FSYKTIVM 8 Unmodified _FSYKTIVM_ 0 0 0 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-MSMS UPN48_class_I_Rep_2 6 494.7617492675781 2 494.762246 987.50994 0.38472 0.00019035 0.0058293 2.8841E-06 0.39055 0.00019323 494.76216754926514 54.663 0.44361 58.245 58.09 58.534 3.5817 37 28 2 0 0 0 0.82752 2 11577 11577;11638 15.847 6.4997 1 88695 9305 4782 5701 5706 11545;11546 11545 0.015684973109273415 FSYKTIVM 8 Unmodified _FSYKTIVM_ 0 0 0 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-MSMS UPN48_class_I_Rep_3 7 494.7625732421875 2 494.762246 987.50994 0.11371 5.6258E-05 0.0054568 2.6998E-06 0.11916 5.8958E-05 494.7621552958707 54.736 0.50343 58.306 58.07 58.573 3.5694 45 32 2 0 0 0 0.82752 2 11473 11473;11548 10.824 1.4765 1 83621 9306 4782 5701 5706 11547;11548 11547 0.015684973109273415 FSYKTIVM 8 Oxidation (M) _FSYKTIVM(Oxidation (M))_ FSYKTIVM(1) FSYKTIVM(48) 0 0 1 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-SECPEP UPN48_class_I_Rep_3 7 503.1077575683594 2 502.759704 1003.50485 0.18624 9.3634E-05 0.061422 3.088E-05 0.24766 0.00012451 502.75969395674434 46.682 0.72222 50.318 49.949 50.671 3.6363 97 44 3 0 0 0 0.72333 1 9071 9071 47.749 26.877 1 421590 9307 4782 5701 5707 11549 11549 150 0.003241934483185105 FSYKTIVM 8 Oxidation (M) _FSYKTIVM(Oxidation (M))_ 0 0 1 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 502.759704 1003.50485 0.19543 9.8256E-05 0.012223 6.1451E-06 0.20766 0.0001044 502.7596997921328 46.683 0.72965 50.202 49.894 50.624 3.5192 -0.011037 -3.9916E-05 NaN 47.749 80 46 2 NaN NaN NaN NaN 0 NaN NaN 0 356380 9308 4782 5701 5707 150 0.003241934483185105 FSYKTIVM 8 Oxidation (M) _FSYKTIVM(Oxidation (M))_ 0 0 1 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 502.759704 1003.50485 0.20565 0.00010339 0.080375 4.0409E-05 0.28602 0.0001438 502.75969665454267 46.369 0.80788 50.118 49.822 50.63 3.7494 -0.094549 2.8613E-05 NaN 47.749 117 50 3 NaN NaN NaN NaN 0 NaN NaN 0 433360 9309 4782 5701 5707 150 0.003241934483185105 FSYLYQRRLRE 11 Unmodified _FSYLYQRRLRE_ 0 0 0 REV__nc|ENSG00000132259|Q8IV77-2|CNGA4 REV__nc|ENSG00000132259|Q8IV77-2|CNGA4 MSMS UPN47_class_I_Rep_2 3 510.9542236328125 3 510.944042 1529.8103 NaN NaN NaN NaN NaN NaN NaN 27.016 1 30.515 30.015 31.015 3.4986 0 0 0 0.38417 1 3994 3994 0.45452 0.29519 1 + 9310 19003 5702 5708 11550 11550 0.06658300565891295 FSYMYFYMC 9 Unmodified _FSYMYFYMC_ 0 0 0 REV__L1MC4_dup15704|chr10:86488540-86489486:+|3.8393962033137696|0.0469488037060458|6.35|151.0|65|2|anti-sense REV__L1MC4_dup15704|chr10:86488540-86489486:+|3.8393962033137696|0.0469488037060458|6.35|151.0|65|2|anti-sense MSMS UPN47_class_I_Rep_2 3 627.7388916015625 2 627.737057 1253.45956 NaN NaN NaN NaN NaN NaN NaN 116.26 1 119.75 119.25 120.25 3.4965 0 0 0 0.40038 1 28376 28376 0.6015 0 1 + 9311 26828 5703 5709 11551 11551 -0.15703116400732142 FSYPYKKL 8 Unmodified _FSYPYKKL_ 0 0 0 ENSG00000114480|ENST00000429644|GBE1;ENST00000477426.1_1_3:81704122-81720126:-|nuORF ENSG00000114480|ENST00000429644|GBE1 ENSG00000114480|ENST00000429644|GBE1 MULTI-MSMS UPN47_class_I_Rep_1 2 523.2894897460938 2 523.289485 1044.56442 0.26898 0.00014076 -0.2312 -0.00012098 0.037783 1.9772E-05 523.2893003393347 66.389 1.1585 69.747 69.382 70.54 3.3576 231 83 4 0 0 0 0.82752 1 15959 15959 12.532 0 1 965270 9312 2077 5704 5710 11552 11552 0.04391832454007272 FSYQVASTL 9 Unmodified _FSYQVASTL_ 0 0 0 ENSG00000166295|ENST00000299381|ANAPC16 ENSG00000166295|ENST00000299381|ANAPC16 ENSG00000166295|ENST00000299381|ANAPC16 MSMS UPN48_class_I_Rep_1 5 508.2586975097656 2 508.258382 1014.50221 NaN NaN NaN NaN NaN NaN NaN 61.627 1 65.095 64.595 65.595 3.4678 0 0 0 0.38073 1 13727 13727 5.2969 1.3525 1 9313 4231 5705 5711 11553 11553 -0.004459386849816838 FSYVRVRYYYV 11 Unmodified _FSYVRVRYYYV_ 0 0 0 REV__L1MA3_dup1680|chr3:114916474-114919066:-|1.0036142378960498|0.0248498428486025|5.34|150.0|147|3|anti-sense REV__L1MA3_dup1680|chr3:114916474-114919066:-|1.0036142378960498|0.0248498428486025|5.34|150.0|147|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 506.2355041503906 3 505.597871 1513.77178 0.15041 7.6047E-05 -0.64141 -0.0003243 -0.491 -0.00024825 505.93183106628345 55.415 0.14037 58.97 58.931 59.072 3.5554 10 8 2 0 0 0 22.551 1 11737 11737 1.2148 0 1 67493 + 9314 24981 5706 5712 11554 11554 0.03544994931371548 FTAEFSSRY 9 Unmodified _FTAEFSSRY_ 0 0 0 ENSG00000185104|ENST00000396153|FAF1 ENSG00000185104|ENST00000396153|FAF1 ENSG00000185104|ENST00000396153|FAF1 MULTI-MSMS UPN48_class_I_Rep_2 6 554.2598876953125 2 554.258914 1106.50327 0.41613 0.00023064 0.20587 0.0001141 0.622 0.00034475 554.2589812062796 44.276 0.55051 48.037 47.798 48.348 3.7617 60 40 2 0 0 0 0.21414 2 8372 8372;8461 19.362 9.9788 1 110140 9315 5085 5707 5713 11555;11556 11555 -0.04571724316087966 FTAEFSSRY 9 Unmodified _FTAEFSSRY_ 0 0 0 ENSG00000185104|ENST00000396153|FAF1 ENSG00000185104|ENST00000396153|FAF1 ENSG00000185104|ENST00000396153|FAF1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 554.258914 1106.50327 0.49592 0.00027487 -0.46091 -0.00025547 0.035007 1.9403E-05 554.2587477701186 44.602 0.39184 48.115 47.915 48.307 3.5132 0.03868 -0.00041219 NaN 19.362 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 129350 9316 5085 5707 5713 -0.04571724316087966 FTAGAKLLF 9 Unmodified _FTAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557156.1_1_12:56745011-56748252:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS UPN48_class_I_Rep_1 5 484.28399658203125 2 484.284203 966.553853 0.30331 0.00014689 0.01221 5.9129E-06 0.31552 0.0001528 484.2839894626941 60.799 0.69576 64.272 63.949 64.645 3.4737 91 56 3 0 0 0 0.21527 1 13437 13437 19.257 2.3147 1 197460 9317 4478 5708 5714 11557 11557 0.06923849799568416 FTAGAKLLF 9 Unmodified _FTAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557156.1_1_12:56745011-56748252:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS UPN48_class_I_Rep_2 6 484.2843933105469 2 484.284203 966.553853 0.31263 0.0001514 0.056209 2.7221E-05 0.36884 0.00017862 484.2839650353727 60.72 0.65961 64.199 63.929 64.589 3.4785 102 60 3 0 0 0 0.11683 1 13437 13437 30.637 0.41173 1 128700 9318 4478 5708 5714 11558 11558 0.06923849799568416 FTAGAKLLF 9 Unmodified _FTAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557156.1_1_12:56745011-56748252:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS UPN48_class_I_Rep_3 7 484.2841796875 2 484.284203 966.553853 0.22081 0.00010694 0.52045 0.00025205 0.74127 0.00035898 484.28398637680783 60.529 0.32272 64.044 63.789 64.112 3.5149 44 27 2 0 0 0 0.15122 1 13310 13310 25.399 2.2509 1 120660 9319 4478 5708 5714 11559 11559 0.06923849799568416 FTAGAKLLF 9 Unmodified _FTAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557156.1_1_12:56745011-56748252:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS UPN48_class_I_Rep_3 7 484.28387451171875 2 484.284203 966.553853 0.22531 0.00010911 0.15753 7.629E-05 0.38284 0.00018541 484.28397810554 60.69 0.20506 64.202 64.11 64.315 3.5129 43 23 2 0 0 0 0.066633 1 13349 13349 41.84 7.7372 1 158440 9320 4478 5708 5714 11560 11560 0.06923849799568416 FTAKIQLF 8 Unmodified _FTAKIQLF_ 0 0 0 REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.28424072265625 2 484.284203 966.553853 0.30331 0.00014689 0.01221 5.9129E-06 0.31552 0.0001528 484.2839894626941 60.799 0.69576 64.272 63.949 64.645 3.4737 91 56 3 0 0 0 0.82752 4 13475 13475;13509;13518;13533 23.148 2.6948 1 197460 + 9321 24699 5709 5715 11561;11562;11563;11564 11561 0.06923849799568416 FTAKIQLF 8 Unmodified _FTAKIQLF_ 0 0 0 REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.7860412597656 2 484.284203 966.553853 0.31263 0.0001514 0.056209 2.7221E-05 0.36884 0.00017862 484.2839650353727 60.72 0.65961 64.199 63.929 64.589 3.4785 102 60 3 0 0 0 0.82752 2 13480 13480;13495 20.454 2.3073 1 128700 + 9322 24699 5709 5715 11565;11566 11565 0.06923849799568416 FTAKIQLF 8 Unmodified _FTAKIQLF_ 0 0 0 REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.28411865234375 2 484.284203 966.553853 NaN NaN NaN NaN NaN NaN NaN 60.49 1 63.968 63.468 64.468 3.4785 0 0 0 0.40157 1 13363 13363 7.2892 1.0834 1 + 9323 24699 5709 5715 11567 11567 0.06923849799568416 FTAKIQLF 8 Unmodified _FTAKIQLF_ 0 0 0 REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.28436279296875 2 484.284203 966.553853 NaN NaN NaN NaN NaN NaN NaN 60.616 1 64.094 63.594 64.594 3.4785 0 0 0 0.37214 1 13401 13401 16.942 2.104 1 + 9324 24699 5709 5715 11568 11568 0.06923849799568416 FTAKIQLF 8 Unmodified _FTAKIQLF_ 0 0 0 REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 484.7868347167969 2 484.284203 966.553853 0.22081 0.00010694 0.52045 0.00025205 0.74127 0.00035898 484.28398637680783 60.529 0.32272 64.044 63.789 64.112 3.5149 44 27 2 0 0 0 0.82752 2 13270 13270;13290 20.454 2.3073 1 120660 + 9325 24699 5709 5715 11569;11570 11569 0.06923849799568416 FTAKIQLF 8 Unmodified _FTAKIQLF_ 0 0 0 REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense REV__L1M5_dup53932|chr22:29178953-29179619:+|1.2269243776119363|0.3129865786586677|1.97|148.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 484.7857971191406 2 484.284203 966.553853 0.22531 0.00010911 0.15753 7.629E-05 0.38284 0.00018541 484.28397810554 60.69 0.20506 64.202 64.11 64.315 3.5129 43 23 2 0 0 0 0.82752 1 13382 13382 7.9102 0 1 158440 + 9326 24699 5709 5715 11571 11571 0.06923849799568416 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-SECPEP UPN47_class_I_Rep_2 3 543.7826538085938 2 543.729989 1085.44543 0.1615 8.781E-05 1.1901 0.00064707 1.3516 0.00073488 543.7308109560609 44.739 0.83123 48.095 47.785 48.616 3.3555 115 52 3 0 0 0 0.044077 1 9327 9327 41.84 31.766 1 224670 9327 1189 5710 5716 11572 11572 -0.09387986241517865 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-SECPEP UPN47_class_I_Rep_3 4 543.7825927734375 2 543.729989 1085.44543 0.19904 0.00010822 1.1993 0.0006521 1.3983 0.00076032 543.7308687524649 44.829 0.62331 48.073 47.839 48.462 3.2441 95 41 3 0 0 0 0.044326 1 9416 9416 36.127 25.303 1 289510 9328 1189 5710 5716 11573 11573 -0.09387986241517865 FTDAGFEHY 9 Unmodified _FTDAGFEHY_ 0 0 0 nc|ENSG00000079335|Q9UNH5-3|CDC14A;ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A nc|ENSG00000079335|Q9UNH5-3|CDC14A MULTI-MATCH UPN47_class_I_Rep_1 2 2 543.729989 1085.44543 0.12202 6.6347E-05 1.2282 0.00066781 1.3502 0.00073416 543.7309089562222 44.439 0.76268 48.134 47.817 48.58 3.6951 0.033326 1.8728E-05 NaN 34.402 134 53 3 NaN NaN NaN NaN 0 NaN NaN 0 301280 9329 1189 5710 5716 -0.09387986241517865 FTDEEGYGRY 10 Unmodified _FTDEEGYGRY_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS UPN47_class_I_Rep_1 2 618.762451171875 2 618.762017 1235.50948 0.0046388 2.8703E-06 -0.27608 -0.00017083 -0.27144 -0.00016796 618.7618439640684 36.716 0.79222 40.385 40.089 40.882 3.6692 139 66 3 0 0 0 0.13712 6 6897 6821;6859;6897;6935;6975;6991 81.915 56.924 1 204700 9330 4997 5711 5717 11574;11575;11576;11577;11578;11579 11576 -0.09885250875231577 FTDEEGYGRY 10 Unmodified _FTDEEGYGRY_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS UPN47_class_I_Rep_2 3 618.7611694335938 2 618.762017 1235.50948 0.045291 2.8024E-05 -0.32571 -0.00020154 -0.28042 -0.00017351 618.7617236003857 37.03 0.81543 40.429 40.108 40.923 3.3988 108 60 2 0 0 0 0.21626 7 6977 6940;6977;7018;7057;7098;7122;7155 42.312 32.239 1 197700 9331 4997 5711 5717 11580;11581;11582;11583;11584;11585;11586 11581 -0.09885250875231577 FTDEEGYGRY 10 Unmodified _FTDEEGYGRY_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS UPN47_class_I_Rep_3 4 618.76220703125 2 618.762017 1235.50948 -0.071119 -4.4005E-05 -0.22143 -0.00013701 -0.29255 -0.00018102 618.7618528998595 37.041 0.66915 40.288 40.101 40.77 3.247 88 51 2 0 0 0 0.26679 5 7066 7023;7066;7105;7148;7169 37.075 26.251 1 147040 9332 4997 5711 5717 11587;11588;11589;11590;11591 11588 -0.09885250875231577 FTDESYLELY 10 Unmodified _FTDESYLELY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS UPN47_class_I_Rep_1 2 640.2903442382812 2 640.290076 1278.5656 0.46339 0.0002967 -0.10462 -6.6987E-05 0.35877 0.00022972 640.289866441178 75.585 0.73081 78.989 78.652 79.383 3.4034 143 69 3 0 0 0 0.1191 5 18666 18589;18628;18666;18703;18739 88.954 51.099 1 248020 9333 4549 5712 5718 11592;11593;11594;11595;11596 11594 -0.06254042758428113 FTDESYLELY 10 Unmodified _FTDESYLELY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS UPN47_class_I_Rep_2 3 640.7913818359375 2 640.290076 1278.5656 0.46075 0.00029501 -0.04355 -2.7885E-05 0.4172 0.00026713 640.2899136072372 75.67 0.74626 78.992 78.728 79.475 3.3216 150 74 3 0 0 0 0.13812 6 18704 18633;18664;18704;18742;18780;18809 69.105 41.476 1 252690 9334 4549 5712 5718 11597;11598;11599;11600;11601;11602 11599 -0.06254042758428113 FTDESYLELY 10 Unmodified _FTDESYLELY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS UPN47_class_I_Rep_3 4 640.2904663085938 2 640.290076 1278.5656 0.46931 0.00030049 -0.09017 -5.7735E-05 0.37914 0.00024276 640.2899080388039 75.668 0.67622 78.925 78.735 79.411 3.2573 112 61 3 0 0 0 0.13812 5 18783 18739;18744;18783;18821;18865 69.105 41.476 1 258830 9335 4549 5712 5718 11603;11604;11605;11606;11607 11605 -0.06254042758428113 FTDFFSTCS 9 Unmodified _FTDFFSTCS_ 0 0 0 L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 528.2157592773438 2 527.71295 1053.41135 0.40312 0.00021273 0.94162 0.0004969 1.3447 0.00070963 527.7132271048512 80.616 0.15181 84.261 84.192 84.344 3.6446 25 21 2 0 0 0 0.41259 1 19128 19128 7.2892 2.0586 1 182900 9336 13079 5713 5719 11608 11608 -0.11322150724777202 FTDFFSTCS 9 Unmodified _FTDFFSTCS_ 0 0 0 L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 527.71295 1053.41135 0.40312 0.00021273 0.94162 0.0004969 1.3447 0.00070963 527.7132271048512 80.616 0.15181 84.261 84.192 84.344 3.6446 -0.17183 -0.0001046 NaN 7.2892 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 182900 9337 13079 5713 5719 -0.11322150724777202 FTDFFSTCS 9 Unmodified _FTDFFSTCS_ 0 0 0 L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense L1MEc_dup2120|chr2:46637201-46637901:-|1.2016156260747857|0.1795844651876899|2.74|151.0|49|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 527.71295 1053.41135 0.49911 0.00026339 2.3002 0.0012138 2.7993 0.0014772 527.7140596336955 80.941 0.044258 84.604 84.564 84.608 3.6635 0.17183 0.0013292 NaN 7.2892 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 64367 9338 13079 5713 5719 -0.11322150724777202 FTDIDGQVY 9 Unmodified _FTDIDGQVY_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS UPN47_class_I_Rep_1 2 529.2459106445312 2 529.245472 1056.47639 0.291 0.00015401 -0.12693 -6.7177E-05 0.16407 8.6836E-05 529.2453852331384 54.7 0.73113 58.201 57.86 58.591 3.5014 76 43 2 0 0 0 0.052902 3 12336 12336;12374;12415 47.749 15.443 1 205490 9339 2312 5714 5720 11609;11610;11611 11609 -0.049588329272637566 FTDIDGQVY 9 Unmodified _FTDIDGQVY_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS UPN47_class_I_Rep_2 3 529.2454833984375 2 529.245472 1056.47639 0.27636 0.00014626 -0.14345 -7.5922E-05 0.13291 7.0343E-05 529.2453829003973 54.917 0.63069 58.227 57.938 58.569 3.3102 65 35 2 0 0 0 0.097406 3 12433 12433;12475;12515 34.402 9.0024 1 218890 9340 2312 5714 5720 11612;11613;11614 11612 -0.049588329272637566 FTDIDGQVY 9 Unmodified _FTDIDGQVY_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;ENST00000497136.6_1_10:122626245-122665534:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS UPN47_class_I_Rep_3 4 529.24560546875 2 529.245472 1056.47639 0.36757 0.00019453 -0.019903 -1.0534E-05 0.34766 0.000184 529.2453050721726 55.083 0.6955 58.261 57.901 58.597 3.1779 90 41 3 0 0 0 0.097406 2 12552 12552;12597 34.402 9.0024 1 152090 9341 2312 5714 5720 11615;11616 11615 -0.049588329272637566 FTDNFSFNTY 10 Unmodified _FTDNFSFNTY_ 0 0 0 ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2 ENSG00000136169|ENST00000611815|SETDB2 ENSG00000136169|ENST00000611815|SETDB2 MULTI-MSMS UPN47_class_I_Rep_1 2 628.2667236328125 2 628.266936 1254.51932 0.41714 0.00026207 0.13588 8.5368E-05 0.55301 0.00034744 628.26688497931 70.617 0.51558 73.988 73.733 74.249 3.3713 97 46 3 0 0 0 0.42099 3 17175 17134;17175;17187 17.863 11.14 1 142750 9342 2954 5715 5721 11617;11618;11619 11618 -0.09776062869832458 FTDNFSFNTY 10 Unmodified _FTDNFSFNTY_ 0 0 0 ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2 ENSG00000136169|ENST00000611815|SETDB2 ENSG00000136169|ENST00000611815|SETDB2 MULTI-MSMS UPN47_class_I_Rep_2 3 628.267578125 2 628.266936 1254.51932 0.41519 0.00026085 0.0085705 5.3845E-06 0.42376 0.00026623 628.2669353855385 70.873 0.55313 74.155 73.869 74.422 3.2828 87 52 3 0 0 0 0.47804 2 17314 17259;17314 13.615 5.4516 1 128030 9343 2954 5715 5721 11620;11621 11621 -0.09776062869832458 FTDNFSFNTY 10 Unmodified _FTDNFSFNTY_ 0 0 0 ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2 ENSG00000136169|ENST00000611815|SETDB2 ENSG00000136169|ENST00000611815|SETDB2 MULTI-MSMS UPN47_class_I_Rep_3 4 628.266845703125 2 628.266936 1254.51932 0.45544 0.00028614 -0.10924 -6.8631E-05 0.3462 0.00021751 628.2667615148267 70.86 0.48582 74.072 73.801 74.287 3.2113 68 40 2 0 0 0 0.40946 1 17338 17338 18.721 8.6473 1 127390 9344 2954 5715 5721 11622 11622 -0.09776062869832458 FTDPGQVAY 9 Unmodified _FTDPGQVAY_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MSMS UPN47_class_I_Rep_1 2 499.23516845703125 2 499.234907 996.455261 NaN NaN NaN NaN NaN NaN NaN 49.316 1 52.975 52.475 53.475 3.6592 0 0 0 0.10941 1 10717 10717 22.736 3.2973 1 9345 4466 5716 5722 11623 11623 -0.04310798236133451 FTDPGQVAY 9 Unmodified _FTDPGQVAY_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MULTI-SECPEP UPN47_class_I_Rep_1 2 498.8040771484375 2 499.234907 996.455261 0.013902 6.9402E-06 0.092457 4.6158E-05 0.10636 5.3098E-05 499.234817120843 49.431 0.09642 53.091 53.03 53.127 3.6592 10 7 2 0 0 0 0.11959 1 10748 10748 8.7454 8.7454 1 45289 9346 4466 5716 5722 11624 11624 -0.04310798236133451 FTDPGQVAY 9 Unmodified _FTDPGQVAY_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MULTI-SECPEP UPN47_class_I_Rep_3 4 498.80413818359375 2 499.234907 996.455261 0.25179 0.0001257 0.088588 4.4226E-05 0.34038 0.00016993 499.2348054608368 49.695 0.60732 52.921 52.621 53.228 3.2262 42 33 2 0 0 0 0.1154 1 10925 10925 13.042 3.695 1 73130 9347 4466 5716 5722 11625 11625 -0.04310798236133451 FTDREIDLY 9 Unmodified _FTDREIDLY_ 0 0 0 ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F ENST00000599123.1_1_19:8619471-8620644:-|nuORF ENST00000599123.1_1_19:8619471-8620644:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 586.28515625 2 586.285128 1170.5557 0.29473 0.0001728 -0.82348 -0.00048279 -0.52875 -0.00031 586.2844867512227 52.283 1.5444 55.842 55.368 56.912 3.5585 283 111 4 0 0 0 0.010397 4 11589 11514;11550;11589;11625 107.1 63.241 1 1503800 9348 3248 5717 5723 11626;11627;11628;11629 11628 -0.022751859731215518 FTDREIDLY 9 Unmodified _FTDREIDLY_ 0 0 0 ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F ENST00000599123.1_1_19:8619471-8620644:-|nuORF ENST00000599123.1_1_19:8619471-8620644:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 586.285128 1170.5557 0.51613 0.0003026 -0.95563 -0.00056027 -0.4395 -0.00025767 586.284475959246 52.508 1.2745 55.842 55.448 56.723 3.3332 0.025066 -0.00014647 NaN 107.1 240 97 3 NaN NaN NaN NaN 0 NaN NaN 0 1592800 9349 3248 5717 5723 -0.022751859731215518 FTDREIDLY 9 Unmodified _FTDREIDLY_ 0 0 0 ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F ENST00000599123.1_1_19:8619471-8620644:-|nuORF ENST00000599123.1_1_19:8619471-8620644:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 586.285128 1170.5557 0.50786 0.00029775 -0.73356 -0.00043007 -0.22569 -0.00013232 586.284586774328 52.561 0.95384 55.766 55.463 56.417 3.2055 -0.050249 0.00011392 NaN 107.1 235 76 4 NaN NaN NaN NaN 0 NaN NaN 0 1578800 9350 3248 5717 5723 -0.022751859731215518 FTDVNSILRY 10 Unmodified _FTDVNSILRY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS UPN47_class_I_Rep_1 2 614.3221435546875 2 614.322045 1226.62954 0.42827 0.0002631 -0.2548 -0.00015653 0.17347 0.00010657 614.3218035089246 62.246 1.0115 65.614 65.223 66.235 3.3681 154 67 3 0 0 0 1.2365E-06 6 14615 14577;14615;14655;14698;14752;14766 135.72 89.979 1 767820 9351 2979 5718 5724 11630;11631;11632;11633;11634;11635 11631 0.025287821891879503 FTDVNSILRY 10 Unmodified _FTDVNSILRY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS UPN47_class_I_Rep_2 3 614.3218994140625 2 614.322045 1226.62954 0.43847 0.00026936 -0.12699 -7.8013E-05 0.31148 0.00019135 614.3218310245321 62.53 0.96986 65.786 65.379 66.349 3.2558 177 62 4 0 0 0 1.1915E-06 7 14718 14682;14718;14764;14800;14839;14885;14893 128.87 75.465 1 699220 9352 2979 5718 5724 11636;11637;11638;11639;11640;11641;11642 11637 0.025287821891879503 FTDVNSILRY 10 Unmodified _FTDVNSILRY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS UPN47_class_I_Rep_3 4 614.3220825195312 2 614.322045 1226.62954 0.41201 0.00025311 -0.19597 -0.00012039 0.21605 0.00013272 614.3218788278547 62.616 1.0112 65.786 65.297 66.308 3.1698 157 61 4 0 0 0 1.7797E-06 7 14799 14754;14758;14799;14850;14876;14891;14940 125.18 79.482 1 850450 9353 2979 5718 5724 11643;11644;11645;11646;11647;11648;11649 11645 0.025287821891879503 FTEEELARY 9 Unmodified _FTEEELARY_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MSMS UPN47_class_I_Rep_3 4 579.2765502929688 2 579.277303 1156.54005 NaN NaN NaN NaN NaN NaN NaN 46.893 1 50.137 49.637 50.637 3.2439 0 0 0 0.37891 1 10074 10074 5.7319 1.4026 1 9354 2230 5719 5725 11650 11650 -0.03195472490187967 FTEEQAVLY 9 Unmodified _FTEEQAVLY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS UPN47_class_I_Rep_1 2 550.2689819335938 2 550.268947 1098.52334 0.41204 0.00022673 0.15918 8.7594E-05 0.57122 0.00031433 550.268822463652 57.464 0.95653 60.901 60.556 61.512 3.437 255 75 4 0 0 0 0.01718 7 13207 13129;13167;13207;13247;13288;13330;13338 65.235 25.278 1 955260 9355 4335 5720 5726 11651;11652;11653;11654;11655;11656;11657 11653 -0.021979733761327225 FTEEQAVLY 9 Unmodified _FTEEQAVLY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS UPN47_class_I_Rep_2 3 550.26904296875 2 550.268947 1098.52334 0.50519 0.00027799 -0.023368 -1.2859E-05 0.48182 0.00026513 550.2687224654969 57.652 1.0059 60.943 60.531 61.537 3.2912 231 81 4 0 0 0 0.006343 8 13281 13201;13241;13281;13317;13350;13390;13406;13414 74.929 34.972 1 986610 9356 4335 5720 5726 11658;11659;11660;11661;11662;11663;11664;11665 11660 -0.021979733761327225 FTEEQAVLY 9 Unmodified _FTEEQAVLY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS UPN47_class_I_Rep_3 4 550.2689819335938 2 550.268947 1098.52334 0.3492 0.00019215 0.24527 0.00013496 0.59447 0.00032712 550.2688309712591 57.756 1.0802 60.924 60.481 61.561 3.1681 243 79 4 0 0 0 0.0054033 6 13359 13283;13319;13359;13399;13438;13482 78.728 38.771 1 961560 9357 4335 5720 5726 11666;11667;11668;11669;11670;11671 11668 -0.021979733761327225 FTEICFMAKH 10 Unmodified _FTEICFMAKH_ 0 0 0 L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|266|3|anti-sense L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|266|3|anti-sense L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|266|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 613.78857421875 2 613.788469 1225.56239 0.44012 0.00027014 0.51563 0.00031649 0.95575 0.00058663 613.7878021052436 62.404 0.835 65.663 65.323 66.158 3.2594 134 53 3 0 0 0 0.52562 1 14678 14678 8.7454 0.58988 1 221670 9358 13562 5721 5727 11672 11672 -0.04137287617777474 FTEICFMAKH 10 Unmodified _FTEICFMAKH_ 0 0 0 L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|266|3|anti-sense L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|266|3|anti-sense L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|266|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 613.7882690429688 2 613.788469 1225.56239 0.41106 0.0002523 0.9652 0.00059243 1.3763 0.00084473 613.7879696479845 62.472 0.82482 65.639 65.294 66.119 3.1667 138 50 4 0 0 0 0.48573 1 14910 14910 13.042 5.4335 1 186350 9359 13562 5721 5727 11673 11673 -0.04137287617777474 FTEPYSSLWI 10 Unmodified _FTEPYSSLWI_ 0 0 0 REV__L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|112|1|anti-sense REV__L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_3 4 621.8060913085938 2 621.805697 1241.59684 NaN NaN NaN NaN NaN NaN NaN 55.399 1 58.577 58.077 59.077 3.1779 0 0 0 0.53105 1 12657 12657 3.2813 0 1 + 9360 24409 5722 5728 11674 11674 -0.014294249336671783 FTETQRLTL 9 Unmodified _FTETQRLTL_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MSMS UPN47_class_I_Rep_3 4 554.80224609375 2 554.803488 1107.59242 NaN NaN NaN NaN NaN NaN NaN 65.668 1 68.847 68.347 69.347 3.1795 0 0 0 0.39428 1 15786 15786 2.0598 0.21551 1 9361 928 5723 5729 11675 11675 0.0429311064342528 FTEWCFFAW 9 Unmodified _FTEWCFFAW_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|144|1|anti-sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_3 4 618.761474609375 2 618.762778 1235.511 NaN NaN NaN NaN NaN NaN NaN 37.735 1 40.976 40.476 41.476 3.2414 0 0 0 0.39428 1 7270 7270 2.0598 0.21551 1 + 9362 25067 5724 5730 11676 11676 -0.09733288320171596 FTFFLYKR 8 Unmodified _FTFFLYKR_ 0 0 0 REV__L1MC1_dup2169|chr3:15783748-15784816:+|21.28185930286726|0.0794248918522391|8.07|151.0|79|3|anti-sense REV__L1MC1_dup2169|chr3:15783748-15784816:+|21.28185930286726|0.0794248918522391|8.07|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_2 3 561.3121948242188 2 561.310752 1120.60695 NaN NaN NaN NaN NaN NaN NaN 48.16 1 51.509 51.009 52.009 3.3492 0 0 0 0.40746 1 10387 10387 0.69038 0 1 + 9363 26534 5725 5731 11677 11677 0.051472275822106894 FTFMYHIY 8 Unmodified _FTFMYHIY_ 0 0 0 LTR49-int_dup1300|chr10:913061-913660:+|3.8194652666290954|0.1651252955121066|4.53|151.0|5|1|sense LTR49-int_dup1300|chr10:913061-913660:+|3.8194652666290954|0.1651252955121066|4.53|151.0|5|1|sense LTR49-int_dup1300|chr10:913061-913660:+|3.8194652666290954|0.1651252955121066|4.53|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 561.2613525390625 2 561.259871 1120.50519 NaN NaN NaN NaN NaN NaN NaN 57.732 1 61.023 60.523 61.523 3.2912 0 0 0 0.33253 1 13315 13315 26.341 11.76 1 9364 15656 5726 5732 11678 11678 -0.05024386831837546 FTFPRFPGI 9 Unmodified _FTFPRFPGI_ 0 0 0 REV__L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|302|3|anti-sense REV__L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|302|3|anti-sense MSMS UPN46_class_I_Rep_3 1 541.7513427734375 2 541.295102 1080.57565 NaN NaN NaN NaN NaN NaN NaN 61.729 1 61.729 61.229 62.229 0 0 0 0 0.38639 1 13756 13756 3.9444 0.3479 1 + 9365 30549 5727 5733 11679 11679 0.03858654548139384 FTFSGREL 8 Unmodified _FTFSGREL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS UPN46_class_I_Rep_3 1 478.7455139160156 2 478.745442 955.476331 0.18389 8.8039E-05 -0.23232 -0.00011122 -0.048429 -2.3185E-05 478.7451037321147 54.979 0.22026 54.979 54.894 55.115 0 39 24 2 0 0 0 0.82752 1 11927 11927 27.629 3.6082 1 242440 9366 2492 5728 5734 11680 11680 -0.003187881366102374 FTGFTPYQE 9 Unmodified _FTGFTPYQE_ 0 0 0 nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 MSMS UPN47_class_I_Rep_2 3 545.2496337890625 2 545.248015 1088.48148 NaN NaN NaN NaN NaN NaN NaN 30.269 1 33.751 33.251 34.251 3.4821 0 0 0 0.38784 1 4965 4965 3.5965 0.31518 1 9367 4423 5729 5735 11681 11681 -0.05922529064673654 FTGHVTSYF 9 Unmodified _FTGHVTSYF_ 0 0 0 REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|56|2|sense REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.751708984375 2 529.750724 1057.4869 0.53934 0.00028572 -0.17131 -9.0753E-05 0.36803 0.00019496 529.7505982860356 55.755 1.0385 59.311 58.876 59.915 3.5559 175 71 3 0 0 0 0.11897 1 11808 11808 30.225 7.0764 1 689330 + 9368 30301 5730 5736 11682 11682 -0.03954805482203483 FTGSIFIGR 9 Unmodified _FTGSIFIGR_ 0 0 0 ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|3|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|2|intron;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron MSMS UPN48_class_I_Rep_1 5 499.2767639160156 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.527 1 57.046 56.546 57.546 3.5192 0 0 0 0.31276 1 11243 11243 10.074 1.4806 1 9369 2069 5731 5737 11683 11683 0.04085777651414446 FTGSIFIGR 9 Unmodified _FTGSIFIGR_ 0 0 0 ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|3|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|2|intron;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron MSMS UPN48_class_I_Rep_2 6 499.2768249511719 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.442 1 57.052 56.552 57.552 3.6098 0 0 0 0.25702 1 11201 11201 13.042 2.8591 1 9370 2069 5731 5737 11684 11684 0.04085777651414446 FTGSIFIGR 9 Unmodified _FTGSIFIGR_ 0 0 0 ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|3|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|2|intron;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron MSMS UPN48_class_I_Rep_2 6 499.2763977050781 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.504 1 57.114 56.614 57.614 3.6098 0 0 0 0.2408 1 11220 11220 13.906 1.3745 1 9371 2069 5731 5737 11685 11685 0.04085777651414446 FTHFCSNWAF 10 Unmodified _FTHFCSNWAF_ 0 0 0 REV__L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|116|3|anti-sense REV__L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|116|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 630.2664184570312 2 630.268758 1258.52296 0.58533 0.00036892 -1.5868 -0.0010001 -1.0015 -0.00063122 630.2676477384005 58.663 0.43753 62.162 61.885 62.322 3.4987 30 24 2 0 0 0 0.53004 1 12815 12815 8.1555 0.54658 1 107970 + 9372 24243 5732 5738 11686 11686 -0.09595671576994391 FTHFCSNWAF 10 Unmodified _FTHFCSNWAF_ 0 0 0 REV__L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|116|3|anti-sense REV__L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|116|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 630.268758 1258.52296 0.55897 0.0003523 -1.5077 -0.00095025 -0.94873 -0.00059795 630.267720815697 58.575 0.43383 62.098 61.877 62.31 3.5231 -0.06295 0.00017522 NaN 8.1555 42 27 2 NaN NaN NaN NaN 0 NaN NaN 0 92424 + 9373 24243 5732 5738 -0.09595671576994391 FTHKMVHK 8 Unmodified _FTHKMVHK_ 0 0 0 nc|ENSG00000005889|P17010-2|ZFX;nc|ENSG00000067646|P08048-2|ZFY;ZFY|p.V651Ffs*51|1|0.06|ENSG00000067646|chrY:2979537-2979537|A/-|frameshift_variant;nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-2|ZFX nc|ENSG00000005889|P17010-2|ZFX MSMS UPN48_class_I_Rep_1 5 514.2791137695312 2 514.278929 1026.54331 NaN NaN NaN NaN NaN NaN NaN 36.779 1 40.286 39.786 40.786 3.507 0 0 0 0.40643 1 6177 6177 2.0598 0 1 9374 708 5733 5739 11687 11687 0.031095438734837444 FTIATQRI 8 Unmodified _FTIATQRI_ 0 0 0 L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|104|2|sense;L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|117|3|sense;L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|35|1|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|104|2|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|104|2|sense MSMS UPN47_class_I_Rep_1 2 475.26025390625 2 475.276909 948.539266 NaN NaN NaN NaN NaN NaN NaN 39.195 1 42.86 42.36 43.36 3.6652 0 0 0 0.39615 1 7638 7638 9.3831 0.78985 1 9375 14674 5734 5740 11688 11688 0.06293777651421806 FTIDDTTGDI 10 Unmodified _FTIDDTTGDI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MULTI-MSMS UPN48_class_I_Rep_1 5 549.2539672851562 2 549.253494 1096.49243 0.49464 0.00027168 0.64748 0.00035563 1.1421 0.00062731 549.2537284189433 79.02 0.43151 82.555 82.248 82.68 3.5352 97 49 3 0 0 0 0.31818 3 18848 18814;18848;18875 27.629 4.8925 1 210610 9376 1577 5735 5741 11689;11690;11691 11690 -0.05195171481068428 FTIDDTTGDI 10 Unmodified _FTIDDTTGDI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MULTI-MSMS UPN48_class_I_Rep_2 6 549.2542724609375 2 549.253494 1096.49243 0.48432 0.00026602 0.72559 0.00039854 1.2099 0.00066455 549.2538037125588 78.496 0.15337 82.118 82.021 82.174 3.6223 32 19 2 0 0 0 0.31818 1 18618 18618 27.629 9.4825 1 142230 9377 1577 5735 5741 11692 11692 -0.05195171481068428 FTIDDTTGDI 10 Unmodified _FTIDDTTGDI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MULTI-MSMS UPN48_class_I_Rep_2 6 549.254150390625 2 549.253494 1096.49243 0.48462 0.00026618 0.51163 0.00028101 0.99625 0.00054719 549.2538165183994 78.611 0.42294 82.233 82.157 82.58 3.6222 95 49 3 0 0 0 0.27684 2 18648 18648;18683 36.127 5.4905 1 223640 9378 1577 5735 5741 11693;11694 11693 -0.05195171481068428 FTIDDTTGDI 10 Unmodified _FTIDDTTGDI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MULTI-MSMS UPN48_class_I_Rep_3 7 549.254150390625 2 549.253494 1096.49243 0.46862 0.00025739 0.6837 0.00037553 1.1523 0.00063292 549.2536911833018 78.673 0.5675 82.294 81.967 82.535 3.6216 107 67 2 0 0 0 0.2363 3 18579 18579;18610;18615 39.95 10.868 1 154600 9379 1577 5735 5741 11695;11696;11697 11695 -0.05195171481068428 FTIDDTTGDI 10 Unmodified _FTIDDTTGDI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MSMS UPN48_class_I_Rep_3 7 549.2538452148438 2 549.253494 1096.49243 NaN NaN NaN NaN NaN NaN NaN 78.762 1 82.383 81.883 82.883 3.6216 0 0 0 0.53105 1 18655 18655 36.127 11.453 1 9380 1577 5735 5741 11698 11698 -0.05195171481068428 FTIDVWQRF 9 Unmodified _FTIDVWQRF_ 0 0 0 ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 MULTI-MSMS UPN48_class_I_Rep_1 5 606.8162841796875 2 606.314023 1210.61349 0.48459 0.00029381 0.10534 6.3872E-05 0.58994 0.00035769 606.3137991056115 55.654 0.72986 59.162 58.785 59.515 3.5082 101 48 3 0 0 0 0.47197 1 11995 11995 3.5965 1.098 1 208120 9381 2232 5736 5742 11699 11699 0.016611207429377828 FTISRAWFEA 10 Unmodified _FTISRAWFEA_ 0 0 0 REV__LTR8A_dup728|chr9:92448502-92449024:-|1.245205846312603|0.0097820157346676|6.99|151.0|29|2|anti-sense REV__LTR8A_dup728|chr9:92448502-92449024:-|1.245205846312603|0.0097820157346676|6.99|151.0|29|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 614.3128662109375 2 614.31148 1226.60841 0.60953 0.00037444 0.12723 7.8157E-05 0.73676 0.0004526 614.8130995307278 54.994 0.65478 58.55 58.278 58.933 3.5559 54 37 2 0 0 0 0.55448 1 11747 11747 4.897 1.3005 1 203010 + 9382 31039 5737 5743 11700 11700 0.0041681688030621444 FTITSYRFT 9 Unmodified _FTITSYRFT_ 0 0 0 ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD MSMS UPN48_class_I_Rep_1 5 568.2921142578125 2 568.292756 1134.57096 NaN NaN NaN NaN NaN NaN NaN 65.846 1 69.298 68.798 69.798 3.4516 0 0 0 0.39518 1 15011 15011 1.8442 0 1 9383 5204 5738 5744 11701 11701 0.009057256146888903 FTIVSKVGRH 10 Unmodified _FTIVSKVGRH_ 0 0 0 REV__ENSG00000212127|ENST00000537503|TAS2R14 REV__ENSG00000212127|ENST00000537503|TAS2R14 MSMS UPN46_class_I_Rep_3 1 572.389404296875 2 572.33529 1142.65603 NaN NaN NaN NaN NaN NaN NaN 51.935 1 51.935 51.435 52.435 0 0 0 0 0.53105 1 11072 11072 1.3295 0 1 + 9384 21237 5739 5745 11702 11702 0.09040515871197385 FTIWLTLWLK 10 Unmodified _FTIWLTLWLK_ 0 0 0 Tigger1_dup11373|chr19:15305343-15306291:-|2.9033793962251453|0.0282202140717731|6.68|151.0|45|1|anti-sense Tigger1_dup11373|chr19:15305343-15306291:-|2.9033793962251453|0.0282202140717731|6.68|151.0|45|1|anti-sense Tigger1_dup11373|chr19:15305343-15306291:-|2.9033793962251453|0.0282202140717731|6.68|151.0|45|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 440.59466552734375 3 440.92867 1319.76418 0.15082 6.6502E-05 0.69986 0.00030859 0.85068 0.00037509 440.92903271906636 27.741 0.42274 31.372 31.154 31.576 3.6311 79 44 2 0 0 0 0.84575 1 3750 3750 0.69767 0.69767 1 104800 9385 33014 5740 5746 11703 11703 0.11708887401732682 FTKAKTRN 8 Unmodified _FTKAKTRN_ 0 0 0 L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|19|1|sense L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|19|1|sense L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|19|1|sense MSMS UPN47_class_I_Rep_1 2 483.2796936035156 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 83.411 1 86.949 86.449 87.449 3.5386 0 0 0 0.40643 1 20861 20861 2.0598 0.21551 1 9386 14066 5741 5747 11704 11704 0.06172295882936396 FTKFFFLT 8 Unmodified _FTKFFFLT_ 0 0 0 REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|118|3|anti-sense REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|118|3|anti-sense MSMS UPN48_class_I_Rep_2 6 525.7849731445312 2 525.786579 1049.5586 NaN NaN NaN NaN NaN NaN NaN 50.882 1 54.55 54.05 55.05 3.6679 0 0 0 0.35715 1 10432 10432 20.454 4.6064 1 + 9387 26176 5742 5748 11705 11705 0.03580733942317238 FTKGCDHC 8 Unmodified _FTKGCDHC_ 0 0 0 REV__nc|ENSG00000167785|Q96NG5-2|ZNF558 REV__nc|ENSG00000167785|Q96NG5-2|ZNF558 MSMS UPN46_class_I_Rep_3 1 455.314453125 2 455.68093 909.347308 NaN NaN NaN NaN NaN NaN NaN 23.485 1 23.485 22.985 23.985 0 0 0 0 0.40753 1 2953 2953 0.6015 0.6015 1 + 9388 20072 5743 5749 11706 11706 -0.11099209362726015 FTKIFKGVRR 10 Unmodified _FTKIFKGVRR_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN47_class_I_Rep_3 4 626.386962890625 2 626.387857 1250.76116 0.51235 0.00032093 -0.49396 -0.00030941 0.018396 1.1523E-05 626.387689476984 104.86 1.0662 108.39 108.21 109.28 3.5308 261 167 2 0 0 0 0.56078 1 25826 25826 3.2813 0 1 42067000 9389 1428 5744 5750 11707 11707 0.1458105706758488 FTKIFKGVRR 10 Unmodified _FTKIFKGVRR_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN48_class_I_Rep_3 7 626.889404296875 2 626.387857 1250.76116 0.59986 0.00037575 -0.45988 -0.00028806 0.13998 8.7684E-05 626.3876986832004 105.15 0.53945 108.86 108.82 109.36 3.702 128 78 2 0 0 0 0.56078 2 24825 24825;24853 3.2813 0 1 1879000 9390 1428 5744 5750 11708;11709 11708 0.1458105706758488 FTKWETYVE 9 Unmodified _FTKWETYVE_ 0 0 0 REV__nc|ENSG00000116205|Q96MN5-2|TCEANC2 REV__nc|ENSG00000116205|Q96MN5-2|TCEANC2 MULTI-SECPEP UPN47_class_I_Rep_2 3 601.7869262695312 2 601.790047 1201.56554 0.51654 0.00031085 -3.716 -0.0022362 -3.1994 -0.0019254 601.7874295986068 53.628 0.15387 56.954 56.857 57.011 3.3266 10 9 2 0 0 0 0.12321 1 12066 12066 3.9444 0.3479 1 48408 + 9391 18599 5745 5751 11710 11710 -0.02717997967761221 FTKWETYVE 9 Unmodified _FTKWETYVE_ 0 0 0 REV__nc|ENSG00000116205|Q96MN5-2|TCEANC2 REV__nc|ENSG00000116205|Q96MN5-2|TCEANC2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 601.790047 1201.56554 0.48305 0.00029069 -3.0674 -0.0018459 -2.5843 -0.0015552 601.7882334752669 53.576 0.088905 56.771 56.732 56.821 3.1948 -0.091436 0.00011428 NaN 3.9444 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 52268 + 9392 18599 5745 5751 -0.02717997967761221 FTLDDESLKY 10 Unmodified _FTLDDESLKY_ 0 0 0 nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 nc|ENSG00000148426|Q86WR7-2|PROSER2 MSMS UPN48_class_I_Rep_2 6 616.0504760742188 2 615.798069 1229.58158 NaN NaN NaN NaN NaN NaN NaN 58.313 1 61.812 61.312 62.312 3.4987 0 0 0 0.53105 1 12689 12689 4.5289 0.58447 1 9393 3509 5746 5752 11711 11711 -0.024023365215271042 FTLECGILYF 10 Unmodified _FTLECGILYF_ 0 0 0 LTR78_dup3657|chr12:101821464-101822131:+|2.531268382595046|0.0200238918498437|6.98|151.0|28|1|anti-sense LTR78_dup3657|chr12:101821464-101822131:+|2.531268382595046|0.0200238918498437|6.98|151.0|28|1|anti-sense LTR78_dup3657|chr12:101821464-101822131:+|2.531268382595046|0.0200238918498437|6.98|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_2 3 603.3012084960938 2 603.299193 1204.58383 NaN NaN NaN NaN NaN NaN NaN 46.918 1 50.269 49.769 50.769 3.3515 0 0 0 0.53105 1 10026 10026 1.4819 0.28856 1 9394 15708 5747 5753 11712 11712 -0.0102757931740598 FTLELHITSTS 11 Unmodified _FTLELHITSTS_ 0 0 0 REV__L1ME3B_dup5880|chr12:76413322-76414242:-|2.1462139090114043|0.0207197700684415|6.69|151.0|78|3|anti-sense REV__L1ME3B_dup5880|chr12:76413322-76414242:-|2.1462139090114043|0.0207197700684415|6.69|151.0|78|3|anti-sense MSMS UPN47_class_I_Rep_2 3 624.8372192382812 2 624.82716 1247.63977 NaN NaN NaN NaN NaN NaN NaN 13.074 1 16.462 15.962 16.962 3.388 0 0 0 0.38417 1 232 232 5.2969 1.1074 1 + 9395 28071 5748 5754 11713 11713 0.02585345123748084 FTLGVVRSA 9 Unmodified _FTLGVVRSA_ 0 0 0 L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|50|3|anti-sense L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|50|3|anti-sense L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|50|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 475.2610168457031 2 475.276909 948.539266 -0.27844 -0.00013234 0.34915 0.00016594 0.070705 3.3604E-05 475.27661486926473 39.356 0.63668 42.735 42.359 42.996 3.3785 45 34 2 0 0 0 0.47493 1 7801 7801 3.2813 0 1 58483 9396 11129 5749 5755 11714 11714 0.06293777651421806 FTLGVVRSA 9 Unmodified _FTLGVVRSA_ 0 0 0 L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|50|3|anti-sense L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|50|3|anti-sense L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|50|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 475.26031494140625 2 475.276909 948.539266 -0.45407 -0.00021581 0.085165 4.0477E-05 -0.3689 -0.00017533 475.2765868810366 39.448 0.68568 42.686 42.416 43.101 3.238 53 46 2 0 0 0 0.47493 1 7888 7888 3.2813 0 1 52994 9397 11129 5749 5755 11715 11715 0.06293777651421806 FTLMIITVF 9 Unmodified _FTLMIITVF_ 0 0 0 L1M4_dup15306|chr13:28083143-28084017:-|5.884362265546246|0.0052542347896002|10.13|151.0|57|2|anti-sense L1M4_dup15306|chr13:28083143-28084017:-|5.884362265546246|0.0052542347896002|10.13|151.0|57|2|anti-sense L1M4_dup15306|chr13:28083143-28084017:-|5.884362265546246|0.0052542347896002|10.13|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_1 2 542.8104858398438 2 542.809196 1083.60384 NaN NaN NaN NaN NaN NaN NaN 82.089 1 85.601 85.101 86.101 3.5122 0 0 0 0.36505 1 20505 20505 7.2892 2.96 1 9398 8849 5750 5756 11716 11716 0.06538216413196096 FTLNETLKI 9 Unmodified _FTLNETLKI_ 0 0 0 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 MSMS UPN48_class_I_Rep_3 7 539.8109130859375 2 539.810782 1077.60701 NaN NaN NaN NaN NaN NaN NaN 63.753 1 67.262 66.762 67.762 3.5091 0 0 0 0.28608 1 14278 14278 11.495 0 1 9399 4785 5751 5757 11717 11717 0.0713118279156788 FTLPFNMALSM 11 Unmodified _FTLPFNMALSM_ 0 0 0 nc|ENSG00000141469|Q13336-2|SLC14A1;ENSG00000141469|ENST00000321925|SLC14A1 nc|ENSG00000141469|Q13336-2|SLC14A1 nc|ENSG00000141469|Q13336-2|SLC14A1 MSMS UPN47_class_I_Rep_2 3 636.3092041015625 2 636.311777 1270.609 NaN NaN NaN NaN NaN NaN NaN 59.069 1 62.351 61.851 62.851 3.2818 0 0 0 0.38417 1 13722 13722 2.4985 0.65425 1 9400 3221 5752 5758 11718 11718 -0.015478477864917295 FTLSFIMKM 9 Unmodified _FTLSFIMKM_ 0 0 0 ENST00000396136.6_1_15:58968480-58971397:-|nuORF ENST00000396136.6_1_15:58968480-58971397:-|nuORF ENST00000396136.6_1_15:58968480-58971397:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 558.7910766601562 2 559.292856 1116.57116 0.61007 0.00034121 -0.54849 -0.00030677 0.061584 3.4443E-05 559.2925355830781 56.379 0.32876 59.912 59.67 59.999 3.5333 36 25 2 0 0 0 0.086155 1 12107 12107 23.148 6.2061 1 192120 9401 6563 5753 5759 11719 11719 0.017536860186964986 FTLSHITQL 9 Unmodified _FTLSHITQL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MSMS UPN48_class_I_Rep_3 7 530.297119140625 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 60.329 1 63.846 63.346 64.346 3.5169 0 0 0 0.31276 1 13244 13244 10.074 2.1638 1 9402 3512 5754 5760 11720 11720 0.049100294773325004 FTLSHITQL 9 Unmodified _FTLSHITQL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MSMS UPN48_class_I_Rep_3 7 530.2950439453125 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 60.337 1 63.854 63.354 64.354 3.5169 0 0 0 0.25702 1 13247 13247 13.042 2.2185 1 9403 3512 5754 5760 11721 11721 0.049100294773325004 FTLWGSSFII 10 Unmodified _FTLWGSSFII_ 0 0 0 L1M2_dup1334|chr2:233071311-233071509:-|1.0268671835105752|0.0004449157399079|11.17|151.0|11|3|anti-sense L1M2_dup1334|chr2:233071311-233071509:-|1.0268671835105752|0.0004449157399079|11.17|151.0|11|3|anti-sense L1M2_dup1334|chr2:233071311-233071509:-|1.0268671835105752|0.0004449157399079|11.17|151.0|11|3|anti-sense MSMS UPN48_class_I_Rep_2 6 585.8137817382812 2 585.813325 1169.6121 NaN NaN NaN NaN NaN NaN NaN 76.806 1 80.418 79.918 80.918 3.6116 0 0 0 0.53105 1 18145 18145 9.3831 0.035688 1 9404 8662 5755 5761 11722 11722 0.034074866542141535 FTLYFYTF 8 Unmodified _FTLYFYTF_ 0 0 0 REV__L1M3f_dup247|chr5:94013707-94016236:+|1.8159069453416647|0.0241729070105233|6.23|151.0|161|3|anti-sense REV__L1M3f_dup247|chr5:94013707-94016236:+|1.8159069453416647|0.0241729070105233|6.23|151.0|161|3|anti-sense MSMS UPN48_class_I_Rep_2 6 551.2666015625 2 551.268219 1100.52188 NaN NaN NaN NaN NaN NaN NaN 77.278 1 80.89 80.39 81.39 3.6116 0 0 0 0.28616 1 18282 18282 34.102 10.954 1 + 9405 24332 5756 5762 11723 11723 -0.024355626742590175 FTMKTVLML 9 2 Oxidation (M) _FTM(Oxidation (M))KTVLM(Oxidation (M))L_ FTM(1)KTVLM(1)L FTM(59)KTVLM(59)L 0 0 2 ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron;nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron MULTI-MSMS UPN48_class_I_Rep_1 5 558.2952270507812 2 558.295596 1114.57664 0.48953 0.00027331 2.8297 0.0015798 3.3192 0.0018531 558.2954145734382 53.148 0.74012 56.667 56.28 57.02 3.5192 142 52 4 0 0 0 0.026395 1 11130 11130 59.368 17.529 1 340910 9406 2056 5757 5763 11724 11724 67;68 0.023933648105185057 FTMKTVLML 9 2 Oxidation (M) _FTM(Oxidation (M))KTVLM(Oxidation (M))L_ FTM(1)KTVLM(1)L FTM(42)KTVLM(42)L 0 0 2 ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron;nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron MULTI-MSMS UPN48_class_I_Rep_2 6 558.2955932617188 2 558.295596 1114.57664 0.5525 0.00030846 2.2365 0.0012486 2.789 0.0015571 558.2953946510947 53.132 0.7711 56.741 56.346 57.117 3.6098 119 48 4 0 0 0 0.066364 1 11084 11084 41.956 7.5538 1 294730 9407 2056 5757 5763 11725 11725 67;68 0.023933648105185057 FTMKTVLML 9 2 Oxidation (M) _FTM(Oxidation (M))KTVLM(Oxidation (M))L_ FTM(1)KTVLM(1)L FTM(68)KTVLM(68)L 0 0 2 ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron;nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron ENSG00000113712.19,CSNK1A1,chr5,-,I9.1,149515727,149517793|72|18.04|3|intron MULTI-MSMS UPN48_class_I_Rep_3 7 558.295654296875 2 558.295596 1114.57664 0.26972 0.00015058 0.12223 6.8239E-05 0.39194 0.00021882 558.295612277545 53.031 0.76625 56.614 56.263 57.029 3.5836 82 49 2 0 0 0 0.013215 2 11019 10976;11019 67.838 25.999 1 538150 9408 2056 5757 5763 11726;11727 11727 67;68 0.023933648105185057 FTMNMLVDIF 10 Unmodified _FTMNMLVDIF_ 0 0 0 ENSG00000197299|ENST00000355112|BLM;ENST00000558825.5_1_15:91337395-91358506:+|nuORF ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MSMS UPN48_class_I_Rep_1 5 615.7993774414062 2 615.798503 1229.58245 NaN NaN NaN NaN NaN NaN NaN 58.409 1 61.896 61.396 62.396 3.487 0 0 0 0.53105 1 12742 12742 2.9952 0 1 9409 5361 5758 5764 11728 11728 -0.023155366778382813 FTNETDIFI 9 Unmodified _FTNETDIFI_ 0 0 0 REV__ENSG00000100206|ENST00000216024|DMC1 REV__ENSG00000100206|ENST00000216024|DMC1 MULTI-MSMS UPN48_class_I_Rep_1 5 550.2691040039062 2 550.268947 1098.52334 0.51076 0.00028105 -0.32882 -0.00018094 0.18193 0.00010011 550.2687033012284 75.919 0.58093 79.419 79.082 79.663 3.4996 108 60 2 0 0 0 0.17897 1 18052 18052 22.736 2.3217 1 205910 + 9410 18095 5759 5765 11729 11729 -0.0219797337615546 FTPAVHASL 9 Unmodified _FTPAVHASL_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN48_class_I_Rep_3 7 471.75506591796875 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 44.711 1 48.348 47.848 48.848 3.6372 0 0 0 0.36505 1 8477 8477 7.2892 2.0586 1 + 9411 5235 5760 5766 11730 11730 0.023978022430469537 FTPCACCCEM 10 Unmodified _FTPCACCCEM_ 0 0 0 REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.1757202148438 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 17.922 1 21.486 20.986 21.986 3.5637 0 0 0 0.53105 1 1095 1095 0.40072 0 1 + 9412 23863 5761 5767 11731 11731 -0.21256439115177272 FTPRQPLNW 9 Unmodified _FTPRQPLNW_ 0 0 0 L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|38|2|anti-sense L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|38|2|anti-sense L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.80859375 2 579.806365 1157.59818 0.42825 0.0002483 -0.078194 -4.5337E-05 0.35006 0.00020296 579.8062514111505 40.564 1.3246 44.068 43.628 44.953 3.5048 308 117 3 0 0 0 0.41259 1 7478 7478 7.2892 0 1 1012200 9413 13193 5762 5768 11732 11732 0.025682539457193343 FTPRQPLNW 9 Unmodified _FTPRQPLNW_ 0 0 0 L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|38|2|anti-sense L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|38|2|anti-sense L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.8065795898438 2 579.806365 1157.59818 0.42641 0.00024724 -0.063855 -3.7024E-05 0.36256 0.00021021 579.8062955945655 40.177 1.5158 43.918 43.43 44.946 3.7413 387 154 3 0 0 0 0.41259 2 7399 7399;7403 7.2892 0 1 1148200 9414 13193 5762 5768 11733;11734 11733 0.025682539457193343 FTQACDGCRH 10 Unmodified _FTQACDGCRH_ 0 0 0 REV__ENSG00000174282|ENST00000380599|ZBTB4 REV__ENSG00000174282|ENST00000380599|ZBTB4 MSMS UPN47_class_I_Rep_2 3 569.7193603515625 2 569.23185 1136.44915 NaN NaN NaN NaN NaN NaN NaN 23.944 1 27.409 26.909 27.909 3.4655 0 0 0 0.53105 1 3094 3094 3.2813 1.2216 1 + 9415 20515 5763 5769 11735 11735 -0.11361963010972431 FTRDPPLP 8 Unmodified _FTRDPPLP_ 0 0 0 LTR2752_dup153|chr10:29608779-29610005:+|1.491973424633141|0.0468167202589079|4.99|151.0|46|1|anti-sense LTR2752_dup153|chr10:29608779-29610005:+|1.491973424633141|0.0468167202589079|4.99|151.0|46|1|anti-sense LTR2752_dup153|chr10:29608779-29610005:+|1.491973424633141|0.0468167202589079|4.99|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.75555419921875 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 44.516 1 48.278 47.778 48.778 3.7617 0 0 0 0.39819 1 8492 8492 8.5933 0 1 9416 15609 5764 5770 11736 11736 0.023978022430242163 FTRLMPRLLS 10 Unmodified _FTRLMPRLLS_ 0 0 0 REV__L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|80|1|anti-sense REV__L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_2 6 617.3734130859375 2 617.36045 1232.70635 NaN NaN NaN NaN NaN NaN NaN 77.679 1 81.301 80.801 81.801 3.6222 0 0 0 0.53105 1 18398 18398 5.7319 0 1 + 9417 25583 5765 5771 11737 11737 0.0993030220467972 FTSIKWALFL 10 Unmodified _FTSIKWALFL_ 0 0 0 L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|13|1|sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|13|1|sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 613.352294921875 2 613.352617 1224.69068 NaN NaN NaN NaN NaN NaN NaN 72.538 1 72.538 72.038 73.038 0 0 0 0 0.53105 1 16772 16772 3.5965 1.9439 1 9418 14159 5766 5772 11738 11738 0.08732338959248409 FTSLGLLEFS 10 Unmodified _FTSLGLLEFS_ 0 0 0 REV__nc|ENSG00000176444|P49760-3|CLK2 REV__nc|ENSG00000176444|P49760-3|CLK2 MSMS UPN48_class_I_Rep_2 6 557.2953491210938 2 557.294965 1112.57538 NaN NaN NaN NaN NaN NaN NaN 89.154 1 92.892 92.392 93.392 3.7379 0 0 0 0.53105 1 21231 21231 21.537 2.175 1 + 9419 20588 5767 5773 11739 11739 0.023591900376231933 FTSLGLLEFS 10 Unmodified _FTSLGLLEFS_ 0 0 0 REV__nc|ENSG00000176444|P49760-3|CLK2 REV__nc|ENSG00000176444|P49760-3|CLK2 MSMS UPN48_class_I_Rep_2 6 557.294189453125 2 557.294965 1112.57538 NaN NaN NaN NaN NaN NaN NaN 89.32 1 93.058 92.558 93.558 3.7379 0 0 0 0.53105 1 21275 21275 21.537 1.1224 1 + 9420 20588 5767 5773 11740 11740 0.023591900376231933 FTSPNCICID 10 Unmodified _FTSPNCICID_ 0 0 0 REV__AluJr_dup77101|chr19:11928002-11928290:-|1.727951263336586|0.164254126793967|3.4|151.0|4|2|sense REV__AluJr_dup77101|chr19:11928002-11928290:-|1.727951263336586|0.164254126793967|3.4|151.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 556.2839965820312 2 556.741185 1111.46782 NaN NaN NaN NaN NaN NaN NaN 112.53 1 112.53 112.03 113.03 0 0 0 0 0.53105 1 27782 27782 1.4819 0.15237 1 + 9421 17060 5768 5774 11741 11741 -0.08345846159772918 FTSRVLLSY 9 Unmodified _FTSRVLLSY_ 0 0 0 REV__L1MA5_dup3777|chr15:49025569-49026524:+|1.5178067414749876|0.320409470160347|2.24|150.0|60|3|anti-sense REV__L1MA5_dup3777|chr15:49025569-49026524:+|1.5178067414749876|0.320409470160347|2.24|150.0|60|3|anti-sense MSMS UPN48_class_I_Rep_3 7 543.3157348632812 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 68.776 1 72.286 71.786 72.786 3.5094 0 0 0 0.2088 1 15793 15793 15.847 2.3393 1 + 9422 25393 5769 5775 11742 11742 0.052783159944056024 FTSRWTFRL 9 Unmodified _FTSRWTFRL_ 0 0 0 L1M4_dup18340|chr17:62543239-62544189:-|1.2076706678510487|0.0136319916726613|6.47|150.0|57|3|anti-sense L1M4_dup18340|chr17:62543239-62544189:-|1.2076706678510487|0.0136319916726613|6.47|150.0|57|3|anti-sense L1M4_dup18340|chr17:62543239-62544189:-|1.2076706678510487|0.0136319916726613|6.47|150.0|57|3|anti-sense MSMS UPN47_class_I_Rep_3 4 405.2221374511719 3 405.220735 1212.64038 NaN NaN NaN NaN NaN NaN NaN 48.709 1 51.944 51.444 52.444 3.2345 0 0 0 0.38536 1 10614 10614 4.1895 2.2831 1 9423 8874 5770 5776 11743 11743 0.042562293541323015 FTTEDYDMF 9 Unmodified _FTTEDYDMF_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10;ENST00000534816.1_1_8:146220430-146220868:+|nuORF ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MSMS UPN47_class_I_Rep_3 4 584.3480224609375 2 584.728797 1167.44304 NaN NaN NaN NaN NaN NaN NaN 115.47 1 118.95 118.45 119.45 3.4802 0 0 0 0.39428 1 28396 28396 2.0598 0 1 9424 4467 5771 5777 11744 11744 -0.13398202761504763 FTTEDYDMF 9 Unmodified _FTTEDYDMF_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10;ENST00000534816.1_1_8:146220430-146220868:+|nuORF ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MSMS UPN48_class_I_Rep_2 6 584.7288208007812 2 584.728797 1167.44304 NaN NaN NaN NaN NaN NaN NaN 115.58 1 119.24 118.74 119.74 3.6607 0 0 0 0.39428 1 27668 27668 2.0598 0 1 9425 4467 5771 5777 11745 11745 -0.13398202761504763 FTTFVFCCIQ 10 Unmodified _FTTFVFCCIQ_ 0 0 0 L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|51|2|anti-sense L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|51|2|anti-sense L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_1 2 604.7761840820312 2 604.77757 1207.54059 NaN NaN NaN NaN NaN NaN NaN 34.97 1 38.656 38.156 39.156 3.6859 0 0 0 0.53105 1 6358 6358 3.2813 0.28607 1 9426 10713 5772 5778 11746 11746 -0.054880923663404246 FTVSGLIALY 10 Unmodified _FTVSGLIALY_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN47_class_I_Rep_1 2 542.3080444335938 2 542.307875 1082.6012 0.45888 0.00024886 -0.17282 -9.3721E-05 0.28606 0.00015514 542.3077223580891 81.795 0.43718 85.307 85.092 85.529 3.5122 76 49 2 0 0 0 0.51565 1 20413 20413 10.074 0 1 197800 + 9427 18658 5773 5779 11747 11747 0.06320084279900584 FTVSGLIALY 10 Unmodified _FTVSGLIALY_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 542.307875 1082.6012 0.47709 0.00025873 -0.37287 -0.00020221 0.10422 5.6519E-05 542.3073394182773 81.625 0.051773 85.009 84.973 85.025 3.3839 -0.19787 -0.00017656 NaN 10.074 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 35949 + 9428 18658 5773 5779 0.06320084279900584 FTVSGLIALY 10 Unmodified _FTVSGLIALY_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 542.307875 1082.6012 0.45813 0.00024845 -0.2186 -0.00011855 0.23954 0.0001299 542.3077046966624 81.981 0.58937 85.304 85.061 85.65 3.3231 0.097709 -9.2327E-06 NaN 10.074 127 67 2 NaN NaN NaN NaN 0 NaN NaN 0 220800 + 9429 18658 5773 5779 0.06320084279900584 FTYGLHMIL 9 Oxidation (M) _FTYGLHM(Oxidation (M))IL_ FTYGLHM(1)IL FTYGLHM(82)IL 0 0 1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MSMS UPN48_class_I_Rep_1 5 555.7862548828125 2 555.786253 1109.55795 NaN NaN NaN NaN NaN NaN NaN 62.462 1 65.924 65.424 66.424 3.4625 0 0 0 1.1732E-10 1 13981 13981 81.864 51.639 1 9430 1089 5774 5780 11748 11748 28 0.0075557123095677525 FTYGLHMIL 9 Oxidation (M) _FTYGLHM(Oxidation (M))IL_ FTYGLHM(1)IL FTYGLHM(47)IL 0 0 1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS UPN48_class_I_Rep_2 6 555.786865234375 2 555.786253 1109.55795 0.54799 0.00030457 -0.20521 -0.00011405 0.34278 0.00019051 555.7861007547358 62.216 0.74313 65.69 65.405 66.148 3.4738 114 55 3 0 0 0 0.054826 1 13998 13998 46.921 25.174 1 363090 9431 1089 5774 5780 11749 11749 28 0.0075557123095677525 FTYGLHMIL 9 Oxidation (M) _FTYGLHM(Oxidation (M))IL_ FTYGLHM(1)IL FTYGLHM(51)IL 0 0 1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.7871704101562 2 555.786253 1109.55795 0.40711 0.00022627 0.10636 5.9114E-05 0.51347 0.00028538 555.78619339919 62.021 0.29644 65.532 65.274 65.57 3.5104 51 25 3 0 0 0 0.045397 1 13711 13711 50.855 30.401 1 395990 9432 1089 5774 5780 11750 11750 28 0.0075557123095677525 FTYGLHMIL 9 Oxidation (M) _FTYGLHM(Oxidation (M))IL_ FTYGLHM(1)IL FTYGLHM(54)IL 0 0 1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.7864990234375 2 555.786253 1109.55795 0.40929 0.00022748 -0.12696 -7.0565E-05 0.28232 0.00015691 555.7861505957873 62.177 0.49762 65.687 65.554 66.052 3.5104 83 42 3 0 0 0 0.038568 1 13788 13788 53.576 29.555 1 268590 9433 1089 5774 5780 11751 11751 28 0.0075557123095677525 FTYLAKCTGI 10 Unmodified _FTYLAKCTGI_ 0 0 0 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 REV__nc|ENSG00000187239|Q96RU3-4|FNBP1 MULTI-MSMS UPN48_class_I_Rep_1 5 558.7910766601562 2 558.791535 1115.56852 0.54705 0.00030569 0.93619 0.00052313 1.4832 0.00082882 558.7921730355108 56.564 0.82693 60.066 59.631 60.458 3.5014 146 67 3 0 0 0 0.21493 1 12142 12142 43.982 4.0321 1 409980 + 9434 20924 5775 5781 11752 11752 0.015355538854009865 FTYSKLSL 8 Unmodified _FTYSKLSL_ 0 0 0 REV__L1ME3Cz_dup2821|chr3:185779822-185780359:+|1.7645748966010013|0.0034939391618398|8.98|148.0|31|1|anti-sense REV__L1ME3Cz_dup2821|chr3:185779822-185780359:+|1.7645748966010013|0.0034939391618398|8.98|148.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.7662048339844 2 479.765843 957.517133 0.076511 3.6707E-05 0.027213 1.3056E-05 0.10372 4.9763E-05 479.76580719553266 53.414 0.50556 56.998 56.728 57.233 3.5836 53 36 2 0 0 0 0.82752 1 11093 11093 24.991 0 1 129750 + 9435 28113 5776 5782 11753 11753 0.03667553183004202 FVAFAARLS 9 Unmodified _FVAFAARLS_ 0 0 0 REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|256|3|anti-sense REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|256|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.27978515625 2 491.279452 980.544351 0.1093 5.3694E-05 -0.17021 -8.3621E-05 -0.060916 -2.9927E-05 491.27928198538245 67.429 0.64272 70.791 70.707 71.349 3.3611 99 49 3 0 0 0 0.47493 1 16347 16347 3.2813 0.97858 1 242110 + 9436 25490 5777 5783 11754 11754 0.053300815140460145 FVAFAARLS 9 Unmodified _FVAFAARLS_ 0 0 0 REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|256|3|anti-sense REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|256|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.78118896484375 2 491.279452 980.544351 0.23488 0.00011539 -0.17089 -8.3955E-05 0.063995 3.1439E-05 491.2792606018872 67.446 0.53772 70.709 70.324 70.862 3.2636 91 43 3 0 0 0 0.47197 1 16162 16162 3.5965 0 1 425060 + 9437 25490 5777 5783 11755 11755 0.053300815140460145 FVAKLHKK 8 Unmodified _FVAKLHKK_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MSMS UPN47_class_I_Rep_1 2 485.8122253417969 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 70.476 1 73.847 73.347 74.347 3.3713 0 0 0 0.40738 1 17128 17128 0.79363 0 1 9438 4789 5778 5784 11756 11756 0.12634951164693575 FVALIHYLL 9 Unmodified _FVALIHYLL_ 0 0 0 ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron MSMS UPN48_class_I_Rep_3 7 544.8087158203125 2 544.828778 1087.643 NaN NaN NaN NaN NaN NaN NaN 72.885 1 76.422 75.922 76.922 3.5373 0 0 0 0.3264 1 17021 17021 9.3474 1.4373 1 9439 2791 5779 5785 11757 11757 0.10268684759080315 FVARAKKY 8 Unmodified _FVARAKKY_ 0 0 0 REV__ENSG00000108651|ENST00000261708|UTP6 REV__ENSG00000108651|ENST00000261708|UTP6 MSMS UPN48_class_I_Rep_3 7 491.7957763671875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 80.765 1 84.428 83.928 84.928 3.6635 0 0 0 0.39408 1 19111 19111 10.183 4.423 1 + 9440 18389 5780 5786 11758 11758 0.08446074267988024 FVARTECPT 9 Unmodified _FVARTECPT_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS UPN48_class_I_Rep_1 5 512.2503662109375 2 512.250034 1022.48552 0.25852 0.00013243 -1.18 -0.00060446 -0.92149 -0.00047203 512.2495772059299 80.793 0.083519 84.355 84.295 84.378 3.5624 16 11 2 0 0 0 0.082592 1 19250 19250 37.974 1.847 1 472450 9441 2688 5781 5787 11759 11759 -0.02482762842601005 FVARTECPT 9 Unmodified _FVARTECPT_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS UPN48_class_I_Rep_1 5 512.2485961914062 2 512.250034 1022.48552 0.25835 0.00013234 -1.4567 -0.0007462 -1.1984 -0.00061386 512.2493888743736 80.904 0.29763 84.467 84.378 84.676 3.5624 50 36 2 0 0 0 0.20276 1 19316 19316 20.454 0 1 293410 9442 2688 5781 5787 11760 11760 -0.02482762842601005 FVATPEHPY 9 Unmodified _FVATPEHPY_ 0 0 0 REV__ENSG00000159147|ENST00000303071|DONSON REV__ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS UPN46_class_I_Rep_3 1 530.7591552734375 2 530.758549 1059.50255 0.28951 0.00015366 -0.19029 -0.000101 0.099223 5.2664E-05 530.7583766427479 48.539 0.69583 48.539 48.205 48.9 0 112 66 2 0 0 0 0.15878 2 10063 10063;10103 24.674 0 1 322880 + 9443 19861 5782 5788 11761;11762 11761 -0.024825189651664914 FVAVEQKTSK 10 Unmodified _FVAVEQKTSK_ 0 0 0 REV__ENSG00000136021|ENST00000360820|SCYL2 REV__ENSG00000136021|ENST00000360820|SCYL2 MSMS UPN47_class_I_Rep_1 2 568.8193969726562 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 68.459 1 71.824 71.324 72.324 3.3646 0 0 0 0.53105 1 16528 16528 1.6526 0 1 + 9444 19170 5783 5789 11763 11763 0.06133683677512636 FVDDQQTFF 9 Unmodified _FVDDQQTFF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN47_class_I_Rep_1 2 573.7589721679688 2 573.758746 1145.50294 0.32891 0.00018872 0.17146 9.8377E-05 0.50037 0.00028709 573.7586750431498 68.385 0.8019 71.75 71.381 72.183 3.3646 142 61 3 0 0 0 0.015319 4 16519 16440;16480;16519;16567 66.457 20.436 1 305590 9445 4341 5784 5790 11764;11765;11766;11767 11766 -0.06399144035935933 FVDDQQTFF 9 Unmodified _FVDDQQTFF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN47_class_I_Rep_2 3 573.7586669921875 2 573.758746 1145.50294 0.39409 0.00022611 -0.019405 -1.1134E-05 0.37469 0.00021498 573.7585807838826 68.553 0.85007 71.823 71.507 72.357 3.2696 185 73 3 0 0 0 0.0060693 6 16610 16533;16558;16573;16610;16646;16687 82.529 36.508 1 333300 9446 4341 5784 5790 11768;11769;11770;11771;11772;11773 11771 -0.06399144035935933 FVDDQQTFF 9 Unmodified _FVDDQQTFF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN47_class_I_Rep_3 4 573.7589721679688 2 573.758746 1145.50294 0.44294 0.00025414 -0.12772 -7.328E-05 0.31522 0.00018086 573.7586175139991 68.603 0.86111 71.801 71.439 72.3 3.1977 157 64 3 0 0 0 0.019142 5 16632 16632;16672;16707;16745;16788 63.961 27.085 1 331590 9447 4341 5784 5790 11774;11775;11776;11777;11778 11774 -0.06399144035935933 FVDLISVKAL 10 Unmodified _FVDLISVKAL_ 0 0 0 L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|114|2|anti-sense L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|114|2|anti-sense L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|114|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.8223266601562 2 552.8368 1103.65905 NaN NaN NaN NaN NaN NaN NaN 68.977 1 72.247 71.747 72.747 3.2696 0 0 0 0.53105 1 16724 16724 6.2058 0.97511 1 9448 9250 5785 5791 11779 11779 0.11136346205330483 FVDVGLYQY 9 Unmodified _FVDVGLYQY_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS UPN47_class_I_Rep_2 3 552.2742919921875 2 552.274032 1102.53351 NaN NaN NaN NaN NaN NaN NaN 71.406 1 74.696 74.196 75.196 3.2899 0 0 0 0.37692 1 17450 17450 6.2058 0.47393 1 9449 5549 5786 5792 11780 11780 -0.013653656509177381 FVDVGLYQY 9 Unmodified _FVDVGLYQY_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS UPN47_class_I_Rep_2 3 552.2748413085938 2 552.274032 1102.53351 NaN NaN NaN NaN NaN NaN NaN 71.549 1 74.838 74.338 75.338 3.2899 0 0 0 0.2408 1 17493 17493 13.906 3.8321 1 9450 5549 5786 5792 11781 11781 -0.013653656509177381 FVDVIQQIF 9 Unmodified _FVDVIQQIF_ 0 0 0 REV__L1M4b_dup4167|chr19:40025616-40026792:-|1.985970363342444|0.4859954989077099|2.03|151.0|71|3|anti-sense REV__L1M4b_dup4167|chr19:40025616-40026792:-|1.985970363342444|0.4859954989077099|2.03|151.0|71|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 555.2062377929688 2 554.8055 1107.59645 0.54262 0.00030105 -0.57119 -0.0003169 -0.028579 -1.5856E-05 554.8051778336469 68.208 0.48506 71.66 71.396 71.881 3.4517 49 41 2 0 0 0 0.10699 1 15699 15699 15.847 1.9411 1 101790 + 9451 24560 5787 5793 11782 11782 0.04695200137143729 FVDVIQQIF 9 Unmodified _FVDVIQQIF_ 0 0 0 REV__L1M4b_dup4167|chr19:40025616-40026792:-|1.985970363342444|0.4859954989077099|2.03|151.0|71|3|anti-sense REV__L1M4b_dup4167|chr19:40025616-40026792:-|1.985970363342444|0.4859954989077099|2.03|151.0|71|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 554.8055 1107.59645 0.50424 0.00027976 -0.39143 -0.00021717 0.11282 6.2591E-05 554.8051061235985 68.043 0.31055 71.551 71.478 71.788 3.5083 -0.054265 7.4341E-05 NaN 15.847 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 108680 + 9452 24560 5787 5793 0.04695200137143729 FVEELLDRAEE 11 Unmodified _FVEELLDRAEE_ 0 0 0 REV__HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|67|2|sense REV__HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|67|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.892333984375 3 450.55763 1348.65106 0.053262 2.3998E-05 0.069842 3.1468E-05 0.1231 5.5465E-05 450.89203660073184 63.743 0.50638 67.099 66.886 67.392 3.3557 60 41 2 0 0 0 0.66974 1 15132 15132 1.4551 0.24029 1 112280 + 9453 23945 5788 5794 11783 11783 -0.009318775727706452 FVEKTMTD 8 Unmodified _FVEKTMTD_ 0 0 0 REV__nc|ENSG00000093167|Q9Y608-5|LRRFIP2 REV__nc|ENSG00000093167|Q9Y608-5|LRRFIP2 MSMS UPN47_class_I_Rep_1 2 485.7321472167969 2 485.731143 969.447733 NaN NaN NaN NaN NaN NaN NaN 27.542 1 31.308 30.808 31.808 3.7662 0 0 0 0.40643 1 4113 4113 2.0598 0 1 + 9454 18042 5789 5795 11784 11784 -0.038212738280549274 FVENEFSVR 9 Unmodified _FVENEFSVR_ 0 0 0 L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|223|1|anti-sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|223|1|anti-sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|223|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.77978515625 2 563.780013 1125.54547 0.51757 0.00029179 -0.46899 -0.00026441 0.048578 2.7388E-05 563.7796009788046 54.867 0.88346 58.186 57.83 58.713 3.3187 84 48 2 0 0 0 0.36258 1 12415 12415 10.151 0.76745 1 160250 9455 9284 5790 5796 11785 11785 -0.012277489077177961 FVESVLAAPG 10 Unmodified _FVESVLAAPG_ 0 0 0 REV__ENSG00000130751|ENST00000602212|NPAS1 REV__ENSG00000130751|ENST00000602212|NPAS1 MSMS UPN48_class_I_Rep_2 6 495.27154541015625 2 495.26875 988.522947 NaN NaN NaN NaN NaN NaN NaN 41.067 1 44.818 44.318 45.318 3.7508 0 0 0 0.53105 1 7463 7463 3.2813 0 1 + 9456 18950 5791 5797 11786 11786 0.02822651694657452 FVFCLFPLF 9 Unmodified _FVFCLFPLF_ 0 0 0 L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|72|2|anti-sense L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|72|2|anti-sense L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|72|2|anti-sense MSMS UPN48_class_I_Rep_2 6 566.7990112304688 2 566.798632 1131.58271 NaN NaN NaN NaN NaN NaN NaN 79.151 1 82.784 82.284 83.284 3.6331 0 0 0 0.381 1 18792 18792 5.2307 0.90143 1 9457 13228 5792 5798 11787 11787 0.022182511043183695 FVFFRDMR 8 Unmodified _FVFFRDMR_ 0 0 0 L1MC4_dup13646|chrX:2734077-2734296:-|1.6825389009383285|0.2465503407507527|2.77|151.0|7|3|sense L1MC4_dup13646|chrX:2734077-2734296:-|1.6825389009383285|0.2465503407507527|2.77|151.0|7|3|sense L1MC4_dup13646|chrX:2734077-2734296:-|1.6825389009383285|0.2465503407507527|2.77|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 559.2824096679688 2 559.284211 1116.55387 NaN NaN NaN NaN NaN NaN NaN 31.843 1 35.378 34.878 35.878 3.5342 0 0 0 0.40738 1 4763 4763 0.79363 0 1 9458 11403 5793 5799 11788 11788 0.00025526527929287113 FVFFRDMR 8 Unmodified _FVFFRDMR_ 0 0 0 L1MC4_dup13646|chrX:2734077-2734296:-|1.6825389009383285|0.2465503407507527|2.77|151.0|7|3|sense L1MC4_dup13646|chrX:2734077-2734296:-|1.6825389009383285|0.2465503407507527|2.77|151.0|7|3|sense L1MC4_dup13646|chrX:2734077-2734296:-|1.6825389009383285|0.2465503407507527|2.77|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 559.2850952148438 2 559.284211 1116.55387 NaN NaN NaN NaN NaN NaN NaN 37.893 1 41.398 40.898 41.898 3.5052 0 0 0 0.40738 1 6497 6497 0.79363 0 1 9459 11403 5793 5799 11789 11789 0.00025526527929287113 FVFGQPFLP 9 Unmodified _FVFGQPFLP_ 0 0 0 REV__L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|237|1|anti-sense REV__L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|237|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.2833862304688 2 526.284203 1050.55385 -0.11692 -6.1533E-05 0.038676 2.0355E-05 -0.078243 -4.1178E-05 526.2841149401479 31.949 0.61847 35.679 35.309 35.928 3.7293 63 47 2 0 0 0 0.45688 2 5388 5357;5388 4.756 0.42677 1 77300 + 9460 29458 5794 5800 11790;11791 11791 0.030598497995470098 FVFGQPFLP 9 Unmodified _FVFGQPFLP_ 0 0 0 REV__L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|237|1|anti-sense REV__L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|237|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.2833862304688 2 526.284203 1050.55385 -0.27996 -0.00014734 -0.026097 -1.3734E-05 -0.30606 -0.00016107 526.2843286390707 32.142 0.70546 35.611 35.366 36.072 3.4691 66 52 2 0 0 0 0.45688 3 5495 5495;5533;5596 4.756 0.42677 1 90464 + 9461 29458 5794 5800 11792;11793;11794 11792 0.030598497995470098 FVFHPFPV 8 Unmodified _FVFHPFPV_ 0 0 0 REV__L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|250|3|anti-sense REV__L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|250|3|anti-sense MSMS UPN48_class_I_Rep_2 6 495.2671203613281 2 495.265813 988.517074 NaN NaN NaN NaN NaN NaN NaN 28.117 1 31.749 31.249 32.249 3.6311 0 0 0 0.40738 1 3827 3827 0.79363 0 1 + 9462 30381 5795 5801 11795 11795 0.022355979736630616 FVFIGVALL 9 Unmodified _FVFIGVALL_ 0 0 0 Tigger1_dup4582|chr5:172079916-172081071:+|2.359617435819992|0.0440656971750067|5.74|151.0|53|2|anti-sense Tigger1_dup4582|chr5:172079916-172081071:+|2.359617435819992|0.0440656971750067|5.74|151.0|53|2|anti-sense Tigger1_dup4582|chr5:172079916-172081071:+|2.359617435819992|0.0440656971750067|5.74|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_2 6 489.8060607910156 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 83.851 1 87.533 87.033 88.033 3.6814 0 0 0 0.22893 1 19943 19943 14.582 0 1 9463 33102 5796 5802 11796 11796 0.105296108390462 FVFLLIVPT 9 Unmodified _FVFLLIVPT_ 0 0 0 REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|131|1|anti-sense REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|131|1|anti-sense MSMS UPN47_class_I_Rep_2 3 524.826904296875 2 524.825704 1047.63685 NaN NaN NaN NaN NaN NaN NaN 111.06 1 114.58 114.08 115.08 3.5271 0 0 0 0.39428 1 27038 27038 2.0598 0 1 + 9464 25063 5797 5803 11797 11797 0.11494166527586458 FVFPGELLL 9 Unmodified _FVFPGELLL_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS UPN47_class_I_Rep_1 2 517.7998046875 2 517.799686 1033.58482 0.39627 0.00020519 -0.062425 -3.2324E-05 0.33385 0.00017287 517.7995799182655 100.51 0.29784 104.3 104.05 104.35 3.7942 72 40 2 0 0 0 0.18929 1 24845 24845 21.747 12.399 1 2895100 9465 1727 5798 5804 11798 11798 0.06937003113830542 FVFPGELLL 9 Unmodified _FVFPGELLL_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS UPN47_class_I_Rep_2 3 517.7997436523438 2 517.799686 1033.58482 0.2628 0.00013608 0.086766 4.4927E-05 0.34957 0.00018101 517.799629338541 100.68 0.16415 104.19 104.07 104.23 3.5063 34 24 2 0 0 0 0.12799 1 24609 24609 28.487 13.905 1 1935900 9466 1727 5798 5804 11799 11799 0.06937003113830542 FVFSVHFIQ 9 Unmodified _FVFSVHFIQ_ 0 0 0 L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|185|3|anti-sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|185|3|anti-sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|185|3|anti-sense MSMS UPN47_class_I_Rep_2 3 562.3447875976562 2 562.300384 1122.58622 NaN NaN NaN NaN NaN NaN NaN 81.419 1 84.803 84.303 85.303 3.3839 0 0 0 0.39518 1 20277 20277 1.8442 0 1 9467 11020 5799 5805 11800 11800 0.029826372025809178 FVFVFSLK 8 Unmodified _FVFVFSLK_ 0 0 0 L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 493.7893371582031 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 22.347 1 25.771 25.271 26.271 3.4241 0 0 0 0.40738 1 2637 2637 0.79363 0 1 9468 12579 5800 5806 11801 11801 0.07033037804956166 FVFVFSLK 8 Unmodified _FVFVFSLK_ 0 0 0 L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense MSMS UPN48_class_I_Rep_1 5 493.7903747558594 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 22.141 1 25.694 25.194 26.194 3.5533 0 0 0 0.40738 1 2122 2122 0.79363 0 1 9469 12579 5800 5806 11802 11802 0.07033037804956166 FVFVFSLK 8 Unmodified _FVFVFSLK_ 0 0 0 L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense L1ME2z_dup6774|chr20:34596956-34597833:+|1.4197124566446435|0.0612364547827593|4.54|151.0|35|3|sense MSMS UPN48_class_I_Rep_2 6 493.79022216796875 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 111.83 1 115.5 115 116 3.6666 0 0 0 0.40738 1 26614 26614 0.79363 0 1 9470 12579 5800 5806 11803 11803 0.07033037804956166 FVFVHLNF 8 Unmodified _FVFVHLNF_ 0 0 0 REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|114|3|anti-sense REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|114|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 511.2721862792969 2 511.776545 1021.53854 0.19581 0.00010021 -3.35 -0.0017144 -3.1542 -0.0016142 511.7740817071204 53.407 0.13688 56.733 56.631 56.768 3.3266 11 8 2 0 0 0 0.72333 1 11979 11979 2.8892 0.82947 1 48140 + 9471 25163 5801 5807 11804 11804 0.028629830023760405 FVFVLCAH 8 Unmodified _FVFVLCAH_ 0 0 0 L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|249|2|anti-sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|249|2|anti-sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|249|2|anti-sense MSMS UPN46_class_I_Rep_3 1 468.244140625 2 468.244024 934.473494 NaN NaN NaN NaN NaN NaN NaN 82.276 1 82.276 81.776 82.776 0 0 0 0 0.40738 1 19481 19481 0.79363 0.10326 1 9472 9349 5802 5808 11805 11805 0.003636652048612632 FVFVPFVL 8 Unmodified _FVFVPFVL_ 0 0 0 L1MC5_dup1608|chr2:127311578-127312379:-|1.2558330830388231|0.222590602759745|2.5|151.0|12|2|sense L1MC5_dup1608|chr2:127311578-127312379:-|1.2558330830388231|0.222590602759745|2.5|151.0|12|2|sense L1MC5_dup1608|chr2:127311578-127312379:-|1.2558330830388231|0.222590602759745|2.5|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 484.28765869140625 2 484.286214 966.557876 NaN NaN NaN NaN NaN NaN NaN 89.416 1 89.416 88.916 89.916 0 0 0 0 0.40581 1 21510 21510 2.8892 0 1 9473 11675 5803 5809 11806 11806 0.07325939293275496 FVFWQLRLS 9 Unmodified _FVFWQLRLS_ 0 0 0 REV__AluJo_dup15029|chr3:128732571-128732839:+|2.2489726524250773|0.0171353035440963|7.04|151.0|5|2|sense REV__AluJo_dup15029|chr3:128732571-128732839:+|2.2489726524250773|0.0171353035440963|7.04|151.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 598.3353881835938 2 598.334759 1194.65496 NaN NaN NaN NaN NaN NaN NaN 102.47 1 106.26 105.76 106.76 3.7888 0 0 0 0.40038 1 25221 25221 0.6015 0 1 + 9474 16985 5804 5810 11807 11807 0.06542301502281589 FVGHFYVFV 9 Unmodified _FVGHFYVFV_ 0 0 0 L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|38|1|anti-sense L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|38|1|anti-sense L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|38|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 557.7899169921875 2 557.789653 1113.56475 -0.0034854 -1.9441E-06 -0.094516 -5.272E-05 -0.098001 -5.4664E-05 558.2910922634474 40.867 0.17931 44.539 44.465 44.644 3.6719 21 17 2 0 0 0 0.12422 1 8137 8137 2.3027 0 1 75916 9475 9914 5805 5811 11808 11808 0.01251252173847206 FVGHQYPL 8 Unmodified _FVGHQYPL_ 0 0 0 L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|51|2|sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|51|2|sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|51|2|sense MSMS UPN46_class_I_Rep_3 1 480.7510681152344 2 480.750527 959.486502 NaN NaN NaN NaN NaN NaN NaN 27.352 1 27.352 26.852 27.852 0 0 0 0 0.40625 1 4051 4051 2.3027 0.24298 1 9476 14358 5806 5812 11809 11809 0.0051381958861611565 FVGRIRQP 8 Unmodified _FVGRIRQP_ 0 0 0 ENSG00000126262|ENST00000599180|FFAR2 ENSG00000126262|ENST00000599180|FFAR2 ENSG00000126262|ENST00000599180|FFAR2 MULTI-MSMS UPN48_class_I_Rep_2 6 486.7905578613281 2 486.790518 971.566484 0.23349 0.00011366 -0.83245 -0.00040523 -0.59896 -0.00029157 486.78998407785207 35.097 1.0992 38.771 38.301 39.4 3.6735 136 105 2 0 0 0 0.82752 1 5652 5652 5.2307 2.6532 1 96842 9477 2530 5807 5813 11810 11810 0.07956305982463618 FVGVLVTPLA 10 Unmodified _FVGVLVTPLA_ 0 0 0 REV__PLOD1|p.G365Afs*23|1|0.12|ENSG00000083444|chr1:11960762-11960762|G/-|frameshift_variant REV__PLOD1|p.G365Afs*23|1|0.12|ENSG00000083444|chr1:11960762-11960762|G/-|frameshift_variant MSMS UPN48_class_I_Rep_2 6 508.3021240234375 2 508.312961 1014.61137 NaN NaN NaN NaN NaN NaN NaN 51.785 1 55.424 54.924 55.924 3.639 0 0 0 0.53105 1 10705 10705 34.102 10.954 1 + 9478 17931 5808 5814 11811 11811 0.10464692005143661 FVGVTDHLY 9 Unmodified _FVGVTDHLY_ 0 0 0 L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 525.741943359375 2 525.766374 1049.5182 0.39696 0.00020871 -3.1372 -0.0016494 -2.7403 -0.0014407 525.7645463636844 65.348 0.066139 68.802 68.767 68.833 3.4541 7 4 2 0 0 0 0.32219 1 14861 14861 12.532 2.4576 1 25304 9479 10951 5809 5815 11812 11812 -0.004582324480907118 FVGVTDHLY 9 Unmodified _FVGVTDHLY_ 0 0 0 L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_2 6 525.765625 2 525.766374 1049.5182 NaN NaN NaN NaN NaN NaN NaN 65.023 1 68.502 68.002 69.002 3.4792 0 0 0 0.19137 1 14748 14748 16.942 6.8684 1 9480 10951 5809 5815 11813 11813 -0.004582324480907118 FVGVTDHLY 9 Unmodified _FVGVTDHLY_ 0 0 0 L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 525.7652587890625 2 525.766374 1049.5182 NaN NaN NaN NaN NaN NaN NaN 64.283 1 67.791 67.291 68.291 3.5083 0 0 0 0.1724 1 14441 14441 18.135 2.2878 1 9481 10951 5809 5815 11814 11814 -0.004582324480907118 FVGVTDHLY 9 Unmodified _FVGVTDHLY_ 0 0 0 L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 525.7649536132812 2 525.766374 1049.5182 NaN NaN NaN NaN NaN NaN NaN 64.843 1 68.351 67.851 68.851 3.5083 0 0 0 0.28335 1 14607 14607 11.64 1.5664 1 9482 10951 5809 5815 11815 11815 -0.004582324480907118 FVGVTDHLY 9 Unmodified _FVGVTDHLY_ 0 0 0 L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense L1MB8_dup14744|chr17:81006076-81006704:-|1.774481822896067|0.3252250276227903|2.45|151.0|22|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 525.766374 1049.5182 0.4781 0.00025137 -2.8691 -0.0015085 -2.391 -0.0012571 525.7649560624005 65.001 0.044815 68.509 68.49 68.535 3.5077 -0.068246 9.6459E-05 NaN 12.532 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 52719 9483 10951 5809 5815 -0.004582324480907118 FVGWCMKLT 9 Unmodified _FVGWCMKLT_ 0 0 0 L1MB4_dup3441|chr7:75087180-75087841:-|1.2666338229972265|0.0403025203095511|4.97|151.0|4|1|sense;L1MB4_dup3432|chr7:74856295-74856956:+|1.4355358567249084|0.051062473350867|4.81|151.0|4|1|sense L1MB4_dup3441|chr7:75087180-75087841:-|1.2666338229972265|0.0403025203095511|4.97|151.0|4|1|sense L1MB4_dup3441|chr7:75087180-75087841:-|1.2666338229972265|0.0403025203095511|4.97|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 542.7691040039062 2 542.769548 1083.52454 NaN NaN NaN NaN NaN NaN NaN 90.063 1 93.753 93.253 94.253 3.6899 0 0 0 0.40038 1 22509 22509 0.6015 0 1 9484 10502 5810 5816 11816 11816 -0.013877538125825595 FVGWNKPI 8 Unmodified _FVGWNKPI_ 0 0 0 ENST00000224140.5_1_9:135218093-135221659:-|nuORF ENST00000224140.5_1_9:135218093-135221659:-|nuORF ENST00000224140.5_1_9:135218093-135221659:-|nuORF MSMS UPN48_class_I_Rep_3 7 480.7704772949219 2 480.76872 959.522887 NaN NaN NaN NaN NaN NaN NaN 19.846 1 23.468 22.968 23.968 3.6215 0 0 0 0.40738 1 1577 1577 0.79363 0 1 9485 5875 5811 5817 11817 11817 0.041506964853283534 FVHFWGMH 8 Unmodified _FVHFWGMH_ 0 0 0 REV__L1PA7_dup5680|chr6:143796419-143800252:-|1.1422970443104776|0.1564095185898279|2.87|150.0|118|1|anti-sense REV__L1PA7_dup5680|chr6:143796419-143800252:-|1.1422970443104776|0.1564095185898279|2.87|150.0|118|1|anti-sense MSMS UPN47_class_I_Rep_2 3 530.735107421875 2 530.744722 1059.47489 NaN NaN NaN NaN NaN NaN NaN 18.539 1 21.929 21.429 22.429 3.3898 0 0 0 0.40581 1 1586 1586 2.8892 0.82947 1 + 9486 30135 5812 5818 11818 11818 -0.052467007063569326 FVHIGKLRKMK 11 Unmodified _FVHIGKLRKMK_ 0 0 0 REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.94842529296875 3 452.94807 1355.82238 0.19341 8.7604E-05 0.43289 0.00019608 0.6263 0.00028368 452.9480974602226 105.88 0.1413 105.88 105.8 105.94 0 33 19 4 0 0 0 0.68478 1 25822 25822 0.094841 0 1 263100 + 9487 22645 5813 5819 11819 11819 0.158702457753634 FVHKIKCVF 9 Unmodified _FVHKIKCVF_ 0 0 0 HAL1ME_dup4684|chr9:41374848-41375611:-|1.214473041425718|0.0101258243209748|6.91|150.0|56|3|anti-sense;HAL1ME_dup4683|chr9:40089875-40090633:+|3.0639109722103663|0.0279366938588434|6.78|151.0|55|3|anti-sense HAL1ME_dup4684|chr9:41374848-41375611:-|1.214473041425718|0.0101258243209748|6.91|150.0|56|3|anti-sense HAL1ME_dup4684|chr9:41374848-41375611:-|1.214473041425718|0.0101258243209748|6.91|150.0|56|3|anti-sense MSMS UPN47_class_I_Rep_1 2 560.822021484375 2 560.82043 1119.62631 NaN NaN NaN NaN NaN NaN NaN 68.095 1 71.459 70.959 71.959 3.3646 0 0 0 0.38299 1 16417 16417 4.756 0 1 9488 7962 5814 5820 11820 11820 0.07127860601485736 FVHLHCCV 8 Unmodified _FVHLHCCV_ 0 0 0 REV__L1MA6_dup3576|chr10:30956346-30957777:-|1.0037931111017175|0.0354843018975664|4.82|151.0|64|1|anti-sense REV__L1MA6_dup3576|chr10:30956346-30957777:-|1.0037931111017175|0.0354843018975664|4.82|151.0|64|1|anti-sense MSMS UPN46_class_I_Rep_3 1 479.42694091796875 2 479.225308 956.436063 NaN NaN NaN NaN NaN NaN NaN 115.99 1 115.99 115.49 116.49 0 0 0 0 0.40738 1 28699 28699 0.79363 0 1 + 9489 25461 5815 5821 11821 11821 -0.043897493324038805 FVHNKNVH 8 Unmodified _FVHNKNVH_ 0 0 0 REV__L1MD_dup773|chr2:55041251-55042073:+|1.074990643672343|0.0181535787245858|5.89|151.0|25|3|sense REV__L1MD_dup773|chr2:55041251-55042073:+|1.074990643672343|0.0181535787245858|5.89|151.0|25|3|sense MSMS UPN48_class_I_Rep_1 5 497.765380859375 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 27.535 1 31.098 30.598 31.598 3.5629 0 0 0 0.40625 1 3559 3559 2.3027 0 1 + 9490 27284 5816 5822 11822 11822 0.01743142568705025 FVHYHFHL 8 Unmodified _FVHYHFHL_ 0 0 0 REV__L1MA3_dup1152|chr2:195760053-195766167:+|1.2558330830388231|0.2030092022331152|2.63|151.0|247|1|anti-sense REV__L1MA3_dup1152|chr2:195760053-195766167:+|1.2558330830388231|0.2030092022331152|2.63|151.0|247|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 549.7844848632812 2 550.277244 1098.53993 0.45146 0.00024843 -3.0172 -0.0016603 -2.5657 -0.0014119 550.2744682349474 50.632 0.47703 53.971 53.75 54.227 3.3386 48 25 3 0 0 0 0.72333 1 11084 11084 2.8892 0 1 77491 + 9491 24959 5817 5823 11823 11823 -0.005393829088689017 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 552.8242797851562 2 552.824224 1103.63389 0.37247 0.00020591 -0.15109 -8.3528E-05 0.22138 0.00012238 552.8241001195465 67.965 0.61185 71.329 71.089 71.701 3.3646 111 46 3 0 0 0 0.026395 4 16420 16337;16375;16420;16458 59.368 17.529 1 200250 9492 2697 5818 5824 11824;11825;11826;11827 11826 0.08622291402753035 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 552.8237915039062 2 552.824224 1103.63389 0.37521 0.00020742 -0.22026 -0.00012177 0.15495 8.5659E-05 552.8240374872229 68.41 0.42635 71.775 71.689 72.116 3.3646 38 32 2 0 0 0 0.14216 2 16502 16502;16543 26.268 3.5319 1 102670 9493 2697 5818 5824 11828;11829 11828 0.08622291402753035 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 552.8245849609375 2 552.824224 1103.63389 0.38396 0.00021226 -0.027153 -1.5011E-05 0.35681 0.00019725 552.8242009511997 68.232 0.74071 71.501 71.232 71.972 3.2696 91 64 2 0 0 0 0.048729 4 16499 16462;16499;16537;16608 49.527 14.595 1 203040 9494 2697 5818 5824 11830;11831;11832;11833 11831 0.08622291402753035 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.8247680664062 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 68.473 1 71.743 71.243 72.243 3.2696 0 0 0 0.062145 1 16574 16574 33.445 4.9581 1 9495 2697 5818 5824 11834 11834 0.08622291402753035 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.82373046875 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 68.599 1 71.868 71.368 72.368 3.2696 0 0 0 0.27207 1 16612 16612 12.241 0.60036 1 9496 2697 5818 5824 11835 11835 0.08622291402753035 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.8219604492188 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 68.608 1 71.878 71.378 72.378 3.2696 0 0 0 0.02515 1 16615 16615 51.415 15.371 1 9497 2697 5818 5824 11836 11836 0.08622291402753035 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000471635.5_1_20:34297104-34301010:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 552.8250732421875 2 552.824224 1103.63389 0.43774 0.000242 -0.037639 -2.0808E-05 0.4001 0.00022119 552.8240672170418 68.31 0.89291 71.507 71.184 72.077 3.1977 121 63 3 0 0 0 0.026395 4 16573 16573;16614;16657;16702 59.368 15.596 1 202100 9498 2697 5818 5824 11837;11838;11839;11840 11837 0.08622291402753035 FVIETARQL 9 Unmodified _FVIETARQL_ 0 0 0 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 MULTI-MSMS UPN46_class_I_Rep_3 1 538.8267211914062 2 538.808574 1075.60259 0.27125 0.00014615 0.076421 4.1176E-05 0.34767 0.00018733 538.8086022007864 56.6 0.77871 56.6 56.392 57.171 0 203 90 3 0 0 0 0.0065234 7 12420 12306;12331;12367;12400;12420;12453;12463 118.07 68.135 1 1099900 9499 2288 5819 5825 11841;11842;11843;11844;11845;11846;11847 11845 0.06781718368665679 FVIETARQL 9 Unmodified _FVIETARQL_ 0 0 0 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 MULTI-MSMS UPN48_class_I_Rep_1 5 538.8086547851562 2 538.808574 1075.60259 0.37427 0.00020166 -0.074287 -4.0027E-05 0.29999 0.00016164 538.8083863102205 51.136 0.74498 54.66 54.317 55.062 3.5246 102 47 3 0 0 0 0.0069776 3 10530 10530;10573;10614 118.07 68.135 1 401700 9500 2288 5819 5825 11848;11849;11850 11848 0.06781718368665679 FVIETARQL 9 Unmodified _FVIETARQL_ 0 0 0 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 MULTI-MSMS UPN48_class_I_Rep_2 6 538.8084106445312 2 538.808574 1075.60259 0.45926 0.00024745 -0.15364 -8.2781E-05 0.30562 0.00016467 538.8083196278459 51.046 0.71434 54.714 54.351 55.065 3.6679 99 43 3 0 0 0 0.006828 4 10564 10440;10482;10523;10564 99.755 61.965 1 325940 9501 2288 5819 5825 11851;11852;11853;11854 11854 0.06781718368665679 FVIETARQL 9 Unmodified _FVIETARQL_ 0 0 0 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 MULTI-MSMS UPN48_class_I_Rep_3 7 538.808349609375 2 538.808574 1075.60259 0.44558 0.00024008 -0.061676 -3.3232E-05 0.3839 0.00020685 538.8083772474247 51.102 0.69853 54.712 54.379 55.078 3.6105 116 46 3 0 0 0 0.0078401 4 10486 10408;10450;10486;10538 142.08 73.999 1 327070 9502 2288 5819 5825 11855;11856;11857;11858 11857 0.06781718368665679 FVIKKYVHY 9 Unmodified _FVIKKYVHY_ 0 0 0 L1MCa_dup2339|chr5:80859877-80861987:-|1.7810620645572754|0.1202201979615777|3.89|151.0|67|3|sense L1MCa_dup2339|chr5:80859877-80861987:-|1.7810620645572754|0.1202201979615777|3.89|151.0|67|3|sense L1MCa_dup2339|chr5:80859877-80861987:-|1.7810620645572754|0.1202201979615777|3.89|151.0|67|3|sense MSMS UPN48_class_I_Rep_2 6 598.843017578125 2 598.844959 1195.67537 NaN NaN NaN NaN NaN NaN NaN 33.669 1 37.33 36.83 37.83 3.6607 0 0 0 0.39428 1 5342 5342 2.0598 0.21551 1 9503 11785 5820 5826 11859 11859 0.08535472162088809 FVIRNIVEA 9 Unmodified _FVIRNIVEA_ 0 0 0 ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26 ENST00000465478.1_1_8:93156318-93156576:-|nuORF ENST00000465478.1_1_8:93156318-93156576:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.811767578125 2 530.811116 1059.60768 0.31933 0.0001695 1.3393 0.00071091 1.6586 0.00088041 530.8115664342455 55.975 0.14072 59.453 59.342 59.482 3.4785 11 8 2 0 0 0 0.38714 1 12749 12749 8.7454 3.0136 1 67212 9504 5388 5821 5827 11860 11860 0.08026022231297247 FVISLGSTRK 10 Unmodified _FVISLGSTRK_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS UPN46_class_I_Rep_3 1 554.3297729492188 2 554.329673 1106.64479 0.41557 0.00023036 -2.4012 -0.001331 -1.9856 -0.0011007 554.3281537786838 107.99 0.3943 107.99 107.91 108.31 0 49 32 3 0 0 0 0.38974 1 26364 26364 20.415 2.2682 1 23808000 9505 4588 5822 5828 11861 11861 0.09573693777065273 FVIYGVSGLKL 11 Unmodified _FVIYGVSGLKL_ 0 0 0 REV__L1MB7_dup4739|chr3:136718955-136719517:+|1.617362355479484|0.0274343848371147|5.88|151.0|29|3|sense REV__L1MB7_dup4739|chr3:136718955-136719517:+|1.617362355479484|0.0274343848371147|5.88|151.0|29|3|sense MSMS UPN47_class_I_Rep_1 2 598.3577270507812 2 598.357899 1194.70125 NaN NaN NaN NaN NaN NaN NaN 84.061 1 87.626 87.126 88.126 3.5655 0 0 0 0.38417 1 21030 21030 1.3295 0.13619 1 + 9506 26272 5823 5829 11862 11862 0.11168321613718035 FVKHVLSHKI 10 Unmodified _FVKHVLSHKI_ 0 0 0 REV__ENSG00000080608|ENST00000397885|PUM3 REV__ENSG00000080608|ENST00000397885|PUM3 MSMS UPN48_class_I_Rep_2 6 604.3677368164062 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 107.95 1 111.62 111.12 112.12 3.6746 0 0 0 0.53105 1 25555 25555 17.113 0 1 + 9507 17906 5824 5830 11863 11863 0.12861965801971564 FVKKRWQI 8 Unmodified _FVKKRWQI_ 0 0 0 REV__L1ME1_dup5796|chr3:48949407-48950587:-|1.0024404412542336|0.0212373429698975|5.56|151.0|36|3|sense REV__L1ME1_dup5796|chr3:48949407-48950587:-|1.0024404412542336|0.0212373429698975|5.56|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 552.82421875 2 552.837468 1103.66038 NaN NaN NaN NaN NaN NaN NaN 68.993 1 72.266 71.766 72.766 3.2728 0 0 0 0.40581 1 16729 16729 2.8892 0 1 + 9508 27783 5825 5831 11864 11864 0.11270025084763802 FVKLLHAYN 9 Unmodified _FVKLLHAYN_ 0 0 0 ENSG00000012171|ENST00000616701|SEMA3B;nc|ENSG00000012171|Q13214-2|SEMA3B ENSG00000012171|ENST00000616701|SEMA3B ENSG00000012171|ENST00000616701|SEMA3B MSMS UPN48_class_I_Rep_1 5 552.8248291015625 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 49.817 1 53.341 52.841 53.841 3.5246 0 0 0 0.28335 1 10108 10108 11.64 3.047 1 9509 781 5826 5832 11865 11865 0.06510326093894037 FVKQFGSSLKI 11 Unmodified _FVKQFGSSLKI_ 0 0 0 L1MB7_dup2576|chr2:97746692-97747756:+|1.4073152963263045|0.0775616731573543|4.18|151.0|5|1|sense L1MB7_dup2576|chr2:97746692-97747756:+|1.4073152963263045|0.0775616731573543|4.18|151.0|5|1|sense L1MB7_dup2576|chr2:97746692-97747756:+|1.4073152963263045|0.0775616731573543|4.18|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 627.0249633789062 2 627.366256 1252.71796 NaN NaN NaN NaN NaN NaN NaN 61.23 1 64.709 64.209 65.209 3.4785 0 0 0 0.38417 1 13585 13585 2.4985 1.0166 1 9510 10815 5827 5833 11866 11866 0.1017082249966279 FVKSLYMVI 9 Unmodified _FVKSLYMVI_ 0 0 0 REV__L1MEc_dup2572|chr2:113937406-113939017:-|7.499260566940518|0.4471631963677381|4.07|151.0|72|1|anti-sense REV__L1MEc_dup2572|chr2:113937406-113939017:-|7.499260566940518|0.4471631963677381|4.07|151.0|72|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.2955932617188 2 550.314646 1098.61474 0.47105 0.00025922 -0.27222 -0.00014981 0.19883 0.00010942 550.314275661454 71.236 0.44586 74.754 74.677 75.123 3.5185 70 39 2 0 0 0 0.30034 1 16615 16615 13.906 13.906 1 342170 + 9511 28437 5828 5834 11867 11867 0.06937618787492283 FVKSSVACK 9 Unmodified _FVKSSVACK_ 0 0 0 ENST00000479095.1_1_9:4679767-4685161:+|nuORF;ENSG00000106993|ENST00000381854|CDC37L1 ENST00000479095.1_1_9:4679767-4685161:+|nuORF ENST00000479095.1_1_9:4679767-4685161:+|nuORF MSMS UPN48_class_I_Rep_1 5 484.7667236328125 2 484.76532 967.516088 NaN NaN NaN NaN NaN NaN NaN 93.843 1 97.463 96.963 97.963 3.6208 0 0 0 0.39518 1 22567 22567 1.8442 1.0506 1 9512 1807 5829 5835 11868 11868 0.031030155424446093 FVKVYIVV 8 Unmodified _FVKVYIVV_ 0 0 0 L1PREC2_dup4062|chr9:41240324-41242611:-|1.4713425405557454|0.0590680164653433|4.64|151.0|139|3|anti-sense L1PREC2_dup4062|chr9:41240324-41242611:-|1.4713425405557454|0.0590680164653433|4.64|151.0|139|3|anti-sense L1PREC2_dup4062|chr9:41240324-41242611:-|1.4713425405557454|0.0590680164653433|4.64|151.0|139|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.80572509765625 2 483.804771 965.59499 0.18505 8.9528E-05 3.1378 0.0015181 3.3228 0.0016076 483.8051192398587 111.61 0.056427 115.13 115.09 115.15 3.5207 6 4 2 0 0 0 0.82752 1 27406 27406 0.79363 0 1 25762 9513 15447 5830 5836 11869 11869 0.11081610839050882 FVKWFYNPG 9 Unmodified _FVKWFYNPG_ 0 0 0 REV__L1MD_dup505|chr1:211805517-211805977:+|1.203034762829189|0.025327924611205|5.57|151.0|20|1|anti-sense REV__L1MD_dup505|chr1:211805517-211805977:+|1.203034762829189|0.025327924611205|5.57|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 579.2926025390625 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 88.672 1 92.065 91.565 92.565 3.3931 0 0 0 0.4007 1 22241 22241 0.52476 0 1 + 9514 27273 5831 5837 11870 11870 -0.0014564931450422591 FVKYKKSFVK 10 Unmodified _FVKYKKSFVK_ 0 0 0 REV__Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|71|1|anti-sense REV__Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_3 7 637.37158203125 2 637.386991 1272.75943 NaN NaN NaN NaN NaN NaN NaN 102.19 1 105.97 105.47 106.47 3.776 0 0 0 0.53105 1 24149 24149 2.4985 1.3051 1 + 9515 32621 5832 5838 11871 11871 0.13396003258981182 FVLAVGCYCY 10 Unmodified _FVLAVGCYCY_ 0 0 0 MLT1D-int_dup140|chr3:87863116-87863772:-|1.0880195527590857|0.0049379849665299|7.78|124.0|11|2|sense MLT1D-int_dup140|chr3:87863116-87863772:-|1.0880195527590857|0.0049379849665299|7.78|124.0|11|2|sense MLT1D-int_dup140|chr3:87863116-87863772:-|1.0880195527590857|0.0049379849665299|7.78|124.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 569.2588500976562 2 569.259013 1136.50347 NaN NaN NaN NaN NaN NaN NaN 74.867 1 78.261 77.761 78.761 3.3937 0 0 0 0.53105 1 18448 18448 1.8442 0 1 9516 16362 5833 5839 11872 11872 -0.05931763912099086 FVLFKSSLKIA 11 Unmodified _FVLFKSSLKIA_ 0 0 0 L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|31|1|anti-sense;L1M4a1_dup913|chr5:70846110-70846663:-|1.2881895225105189|0.0393409289713198|5.03|149.0|31|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|31|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.88916015625 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 103.6 1 107.34 106.84 107.84 3.7434 0 0 0 0.38417 1 24467 24467 4.897 1.6157 1 9517 8964 5834 5840 11873 11873 0.14328583539145257 FVLFKSSLKIA 11 Unmodified _FVLFKSSLKIA_ 0 0 0 L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|31|1|anti-sense;L1M4a1_dup913|chr5:70846110-70846663:-|1.2881895225105189|0.0393409289713198|5.03|149.0|31|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|31|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.8887939453125 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.66 1 108.38 107.88 108.88 3.7192 0 0 0 0.38417 1 24710 24710 4.897 0 1 9518 8964 5834 5840 11874 11874 0.14328583539145257 FVLIGPPARRW 11 Unmodified _FVLIGPPARRW_ 0 0 0 L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|198|3|anti-sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|198|3|anti-sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|198|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 437.7530517578125 3 437.927663 1310.76116 -0.33261 -0.00014566 0.25891 0.00011339 -0.073691 -3.2271E-05 438.2620954076765 42.085 0.33782 45.765 45.63 45.967 3.6792 30 22 2 0 0 0 22.551 1 8485 8485 0.40827 0.40827 1 96827 9519 15036 5835 5841 11875 11875 0.11821057067595575 FVLKKLYWKYK 11 Unmodified _FVLKKLYWKYK_ 0 0 0 REV__ENSG00000174992|ENST00000400752|ZG16 REV__ENSG00000174992|ENST00000400752|ZG16 MULTI-MSMS UPN47_class_I_Rep_1 2 505.9745788574219 3 505.974391 1514.90134 0.33283 0.0001684 0.10532 5.3288E-05 0.43815 0.00022169 505.9743908556388 107.12 0.61462 110.79 110.39 111 3.6724 288 81 5 0 0 0 0.68478 2 26244 26244;26276 0.094841 0.094841 1 2453400 + 9520 20541 5836 5842 11876;11877 11876 0.1644879628131548 FVLKKLYWKYK 11 Unmodified _FVLKKLYWKYK_ 0 0 0 REV__ENSG00000174992|ENST00000400752|ZG16 REV__ENSG00000174992|ENST00000400752|ZG16 MULTI-MSMS UPN47_class_I_Rep_2 3 505.97442626953125 3 505.974391 1514.90134 0.36141 0.00018286 0.0020415 1.0329E-06 0.36345 0.0001839 505.9743011263598 107.16 0.5099 110.7 110.34 110.85 3.5345 252 75 4 0 0 0 0.68478 3 25889 25889;25913;25938 0.094841 0.094841 1 3954600 + 9521 20541 5836 5842 11878;11879;11880 11878 0.1644879628131548 FVLLRANLY 9 Unmodified _FVLLRANLY_ 0 0 0 L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|154|3|anti-sense L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|154|3|anti-sense L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|154|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 554.7769165039062 2 554.829309 1107.64407 0.48697 0.00027018 -0.74829 -0.00041517 -0.26132 -0.00014499 555.3300422059837 70.97 0.1662 74.506 74.449 74.615 3.5359 27 19 2 0 0 0 0.099402 1 16561 16561 18.135 0 1 66129 9522 9493 5837 5843 11881 11881 0.09454899127990757 FVLLRANLY 9 Unmodified _FVLLRANLY_ 0 0 0 L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|154|3|anti-sense L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|154|3|anti-sense L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|154|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 554.7772216796875 2 554.829309 1107.64407 0.45317 0.00025143 -0.62724 -0.00034801 -0.17407 -9.6577E-05 554.8290514372687 70.812 0.45449 74.331 74.097 74.552 3.5185 70 49 2 0 0 0 0.080678 1 16367 16367 24.674 0 1 116730 9523 9493 5837 5843 11882 11882 0.09454899127990757 FVLMLPVCR 9 Unmodified _FVLMLPVCR_ 0 0 0 L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 539.3004150390625 2 539.301016 1076.58748 0.396 0.00021356 -0.9327 -0.00050301 -0.5367 -0.00028944 539.3003232518338 43.4 0.51646 47.162 46.948 47.465 3.7617 58 41 2 0 0 0 0.17468 1 8153 8153 23.148 0 1 136940 9524 8976 5838 5844 11883 11883 0.05224811975449484 FVLMLPVCR 9 Unmodified _FVLMLPVCR_ 0 0 0 L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 539.3013916015625 2 539.301016 1076.58748 0.47628 0.00025686 -0.80436 -0.00043379 -0.32808 -0.00017693 539.300328570888 43.511 0.59544 47.15 46.897 47.492 3.6385 66 41 2 0 0 0 0.33654 2 8138 8138;8187 11.64 0 1 143820 9525 8976 5838 5844 11884;11885 11884 0.05224811975449484 FVLMLPVCR 9 Unmodified _FVLMLPVCR_ 0 0 0 L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense L1M4a2_dup1938|chr19:37961316-37962132:-|1.243868969847621|0.0089563471404699|7.12|151.0|37|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 539.301016 1076.58748 0.396 0.00021356 -0.9327 -0.00050301 -0.5367 -0.00028944 539.3003232518338 43.4 0.51646 47.162 46.948 47.465 3.7617 0.005942 -5.7553E-05 NaN 23.148 58 41 2 NaN NaN NaN NaN 0 NaN NaN 0 136940 9526 8976 5838 5844 0.05224811975449484 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MSMS UPN46_class_I_Rep_3 1 500.78924560546875 2 500.789318 999.564084 NaN NaN NaN NaN NaN NaN NaN 92.847 1 92.847 92.347 93.347 0 0 0 0 0.38639 1 22484 22484 3.9444 0.66309 1 9527 4937 5839 5845 11886 11886 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 500.78936767578125 2 500.789318 999.564084 0.26057 0.00013049 0.038829 1.9445E-05 0.2994 0.00014994 500.78923157709045 86.996 0.19172 90.633 90.521 90.713 3.6372 36 24 2 0 0 0 0.26948 1 21715 21715 15.847 7.2539 1 72759 9528 4937 5839 5845 11887 11887 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 500.7898864746094 2 500.789318 999.564084 0.26214 0.00013128 0.14456 7.2393E-05 0.4067 0.00020367 500.78940462749694 87.163 0.46468 90.8 90.663 91.128 3.6372 92 57 2 0 0 0 0.029391 2 21774 21744;21774 57.471 27.247 1 174460 9529 4937 5839 5845 11888;11889 11889 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 500.8185729980469 2 500.789318 999.564084 0.26444 0.00013243 -0.31533 -0.00015791 -0.050891 -2.5486E-05 500.7891988614464 87.618 0.077827 91.255 91.185 91.263 3.6372 11 8 2 0 0 0 0.12034 1 21884 21884 7.2892 3.6927 1 32876 9530 4937 5839 5845 11890 11890 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 500.7894592285156 2 500.789318 999.564084 0.34064 0.00017059 -0.059679 -2.9887E-05 0.28097 0.0001407 500.78928968723034 87.404 0.66502 90.851 90.421 91.086 3.4471 137 85 3 0 0 0 0.018707 4 21664 21637;21664;21694;21731 64.236 34.012 1 652970 9531 4937 5839 5845 11891;11892;11893;11894 11892 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 500.81817626953125 2 500.789318 999.564084 0.3448 0.00017267 0.12253 6.1364E-05 0.46733 0.00023403 500.78937888211357 87.672 0.09549 91.119 91.086 91.182 3.4471 15 11 2 0 0 0 0.12034 1 21786 21786 7.2892 4.7117 1 45358 9532 4937 5839 5845 11895 11895 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.7895202636719 2 500.789318 999.564084 0.27841 0.00013942 0.0091525 4.5835E-06 0.28756 0.00014401 500.7893363407292 87.402 0.40115 90.787 90.521 90.922 3.3846 82 49 2 0 0 0 0.051515 3 21873 21844;21873;21909 48.346 31.404 1 176470 9533 4937 5839 5845 11896;11897;11898 11897 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1 ENST00000536027.1_1_16:71958181-71961713:+|nuORF ENST00000536027.1_1_16:71958181-71961713:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 500.8184509277344 2 500.789318 999.564084 0.27902 0.00013973 -0.035968 -1.8012E-05 0.24305 0.00012172 500.789349550794 87.695 0.27329 91.082 90.933 91.206 3.3873 49 31 2 0 0 0 0.053131 1 22003 22003 34.102 20.595 1 165940 9534 4937 5839 5845 11899 11899 0.06428412734157973 FVLRRRML 8 Unmodified _FVLRRRML_ 0 0 0 AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense AluSx_dup62485|chrX:153923780-153924078:-|1.0540961484578473|0.1816982874042689|2.54|151.0|16|3|anti-sense MSMS UPN48_class_I_Rep_2 6 545.8369140625 2 545.836946 1089.65934 NaN NaN NaN NaN NaN NaN NaN 98.982 1 102.75 102.25 103.25 3.7707 0 0 0 0.40738 1 23513 23513 0.79363 0 1 9535 295 5840 5846 11900 11900 0.11809487444202205 FVLSLSFSVQA 11 Unmodified _FVLSLSFSVQA_ 0 0 0 MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|53|2|anti-sense MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|53|2|anti-sense MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 600.3145141601562 2 599.329339 1196.64412 0.58544 0.00035087 0.55039 0.00032987 1.1358 0.00068074 599.3291866741263 57.694 1.0324 61.208 60.738 61.771 3.5142 157 76 3 0 0 0 0.62748 1 12471 12471 4.5289 0.19963 1 274630 9536 16376 5841 5847 11901 11901 0.053668543373532884 FVLWREFE 8 Unmodified _FVLWREFE_ 0 0 0 REV__L1PA8_dup7674|chr19:21553673-21554353:-|1.1464213418263336|0.1467731577499776|2.97|141.0|26|1|anti-sense REV__L1PA8_dup7674|chr19:21553673-21554353:-|1.1464213418263336|0.1467731577499776|2.97|141.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 563.2891845703125 2 563.290017 1124.56548 NaN NaN NaN NaN NaN NaN NaN 40.7 1 40.7 40.2 41.2 0 0 0 0 0.40738 1 7917 7917 0.79363 0.10326 1 + 9537 30254 5842 5848 11902 11902 0.008180468229056714 FVLYYLIRY 9 Unmodified _FVLYYLIRY_ 0 0 0 L1MC4a_dup8279|chr15:55877005-55878099:-|1.0389676835566717|0.0368348838857771|4.82|150.0|65|2|anti-sense L1MC4a_dup8279|chr15:55877005-55878099:-|1.0389676835566717|0.0368348838857771|4.82|150.0|65|2|anti-sense L1MC4a_dup8279|chr15:55877005-55878099:-|1.0389676835566717|0.0368348838857771|4.82|150.0|65|2|anti-sense MSMS UPN48_class_I_Rep_1 5 625.7886352539062 2 625.352617 1248.69068 NaN NaN NaN NaN NaN NaN NaN 64.317 1 67.775 67.275 68.275 3.4578 0 0 0 0.39428 1 14551 14551 2.0598 0.21551 1 9538 11621 5843 5849 11903 11903 0.07628338959261782 FVMFFVYW 8 Unmodified _FVMFFVYW_ 0 0 0 REV__L1M5_dup9796|chr3:47060475-47060942:+|1.1242072856726404|0.0155577944262844|6.18|151.0|22|1|anti-sense REV__L1M5_dup9796|chr3:47060475-47060942:+|1.1242072856726404|0.0155577944262844|6.18|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_1 2 569.3200073242188 2 569.775157 1137.53576 NaN NaN NaN NaN NaN NaN NaN 16.166 1 19.682 19.182 20.182 3.5158 0 0 0 0.40738 1 989 989 0.79363 0.10326 1 + 9539 24714 5844 5850 11904 11904 -0.027506084467859182 FVMISAINGC 10 Unmodified _FVMISAINGC_ 0 0 0 REV__nc|ENSG00000119414|O00743-2|PPP6C REV__nc|ENSG00000119414|O00743-2|PPP6C MULTI-MSMS UPN46_class_I_Rep_3 1 527.7568359375 2 527.756638 1053.49872 0.19528 0.00010306 0.19727 0.00010411 0.39255 0.00020717 527.7567722913557 35.45 0.5756 35.45 35.252 35.828 0 72 41 2 0 0 0 0.40227 1 6446 6446 19.257 3.4098 1 168610 + 9540 18673 5845 5851 11905 11905 -0.025886480548479085 FVMLDFPM 8 Unmodified _FVMLDFPM_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MSMS UPN48_class_I_Rep_2 6 500.27655029296875 2 500.23755 998.460547 NaN NaN NaN NaN NaN NaN NaN 31.253 1 34.894 34.394 35.394 3.641 0 0 0 0.40604 1 4679 4679 2.5775 0 1 + 9541 18838 5846 5852 11906 11906 -0.03874533969519689 FVMRIPMFH 9 Unmodified _FVMRIPMFH_ 0 0 0 REV__L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|42|3|sense REV__L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|42|3|sense MSMS UPN48_class_I_Rep_1 5 589.304931640625 2 589.30409 1176.59363 NaN NaN NaN NaN NaN NaN NaN 111.39 1 115.02 114.52 115.52 3.6326 0 0 0 0.40038 1 27024 27024 0.6015 0 1 + 9542 29403 5847 5853 11907 11907 0.012393302069767742 FVMWYFAQ 8 Unmodified _FVMWYFAQ_ 0 0 0 REV__Tigger4_dup850|chr9:88438792-88439592:+|1.107982605396676|0.0102937228683805|6.75|151.0|52|3|anti-sense REV__Tigger4_dup850|chr9:88438792-88439592:+|1.107982605396676|0.0102937228683805|6.75|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_2 6 546.2567138671875 2 546.254588 1090.49462 NaN NaN NaN NaN NaN NaN NaN 51.186 1 54.854 54.354 55.354 3.6679 0 0 0 0.39408 1 10525 10525 10.183 0.83596 1 + 9543 32786 5848 5854 11908 11908 -0.04700369486272393 FVNVNIKVI 9 Unmodified _FVNVNIKVI_ 0 0 0 REV__L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|29|2|anti-sense REV__L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.323974609375 2 523.32386 1044.63317 0.016094 8.4225E-06 0.10972 5.7421E-05 0.12582 6.5843E-05 523.3237384260852 63.119 0.84171 66.374 65.925 66.767 3.2558 111 56 3 0 0 0 0.33654 1 14917 14917 11.64 0 1 166170 + 9544 28484 5849 5855 11909 11909 0.11263496753713298 FVNVNIKVI 9 Unmodified _FVNVNIKVI_ 0 0 0 REV__L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|29|2|anti-sense REV__L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 523.3240356445312 2 523.32386 1044.63317 NaN NaN NaN NaN NaN NaN NaN 63.229 1 66.398 65.898 66.898 3.1698 0 0 0 0.36505 1 15044 15044 7.2892 0 1 + 9545 28484 5849 5855 11910 11910 0.11263496753713298 FVNWYILP 8 Unmodified _FVNWYILP_ 0 0 0 HERVL74-int_dup317|chr19:9426684-9427318:+|1.8249835921942203|0.163348777158164|3.48|151.0|43|3|anti-sense HERVL74-int_dup317|chr19:9426684-9427318:+|1.8249835921942203|0.163348777158164|3.48|151.0|43|3|anti-sense HERVL74-int_dup317|chr19:9426684-9427318:+|1.8249835921942203|0.163348777158164|3.48|151.0|43|3|anti-sense MSMS UPN47_class_I_Rep_3 4 526.2840576171875 2 526.284203 1050.55385 NaN NaN NaN NaN NaN NaN NaN 32.408 1 35.695 35.195 36.195 3.2867 0 0 0 0.40364 1 5651 5651 5.7604 0.52976 1 9546 8404 5850 5856 11911 11911 0.030598497995470098 FVPHRWRFV 9 Unmodified _FVPHRWRFV_ 0 0 0 REV__L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|372|3|anti-sense REV__L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|372|3|anti-sense MSMS UPN46_class_I_Rep_3 1 622.3460083007812 2 622.345992 1242.67743 NaN NaN NaN NaN NaN NaN NaN 90.965 1 90.965 90.465 91.465 0 0 0 0 0.39428 1 21950 21950 2.0598 0.21551 1 + 9547 30228 5851 5857 11912 11912 0.06579945690555178 FVPLSTTLL 9 Unmodified _FVPLSTTLL_ 0 0 0 ENSG00000160712.13,IL6R,chr1,+,I7.1,154437545,154445046|49|12.04|2|intron ENSG00000160712.13,IL6R,chr1,+,I7.1,154437545,154445046|49|12.04|2|intron ENSG00000160712.13,IL6R,chr1,+,I7.1,154437545,154445046|49|12.04|2|intron MSMS UPN48_class_I_Rep_3 7 495.3147277832031 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 68.515 1 72.024 71.524 72.524 3.5094 0 0 0 0.39518 1 15714 15714 1.8442 1.0506 1 9548 3882 5852 5858 11913 11913 0.0845269925117691 FVPMHWIET 9 Unmodified _FVPMHWIET_ 0 0 0 REV__MER68B_dup394|chr17:76786443-76786808:-|1.2451313742003955|0.3268162493467003|1.93|151.0|2|1|sense REV__MER68B_dup394|chr17:76786443-76786808:-|1.2451313742003955|0.3268162493467003|1.93|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.28271484375 2 580.283877 1158.5532 0.40627 0.00023575 0.65944 0.00038266 1.0657 0.00061842 580.2838648847824 47.913 0.31458 51.546 51.346 51.66 3.6339 28 21 2 0 0 0 0.45688 1 9417 9417 4.756 0 1 102390 + 9549 31544 5853 5859 11914 11914 -0.01973312911809444 FVPNPLDQY 9 Unmodified _FVPNPLDQY_ 0 0 0 REV__ENSG00000180917|ENST00000434935|CMTR2 REV__ENSG00000180917|ENST00000434935|CMTR2 MSMS UPN47_class_I_Rep_1 2 546.771484375 2 546.771657 1091.52876 NaN NaN NaN NaN NaN NaN NaN 47.244 1 50.939 50.439 51.439 3.6951 0 0 0 0.39036 1 10098 10098 2.9952 0 1 + 9550 20718 5854 5860 11915 11915 -0.013342497936491782 FVPQHHLHA 9 Unmodified _FVPQHHLHA_ 0 0 0 L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|52|3|sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|52|3|sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|52|3|sense MSMS UPN48_class_I_Rep_3 7 543.2862548828125 2 543.2856 1084.55665 NaN NaN NaN NaN NaN NaN NaN 61.943 1 65.454 64.954 65.954 3.5104 0 0 0 0.39428 1 13730 13730 2.0598 0 1 9551 8597 5855 5861 11916 11916 0.017751179770812087 FVPSLVLIKYF 11 Unmodified _FVPSLVLIKYF_ 0 0 0 L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|105|1|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|105|1|anti-sense L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|105|1|anti-sense MSMS UPN47_class_I_Rep_3 4 442.5997009277344 3 442.600442 1324.7795 NaN NaN NaN NaN NaN NaN NaN 46.829 1 50.073 49.573 50.573 3.2439 0 0 0 0.38417 1 10055 10055 1.4551 0.67859 1 9552 12520 5856 5862 11917 11917 0.13009754198924384 FVPVDHYF 8 Unmodified _FVPVDHYF_ 0 0 0 REV__L1M4b_dup3933|chr18:13595665-13599473:-|1.9751199745175383|0.0548403871617865|5.17|151.0|237|3|anti-sense REV__L1M4b_dup3933|chr18:13595665-13599473:-|1.9751199745175383|0.0548403871617865|5.17|151.0|237|3|anti-sense MSMS UPN48_class_I_Rep_2 6 512.2489013671875 2 512.25036 1022.48617 NaN NaN NaN NaN NaN NaN NaN 80.97 1 84.627 84.127 85.127 3.6567 0 0 0 0.35537 1 19211 19211 20.871 5.024 1 + 9553 24550 5857 5863 11918 11918 -0.024176001312412154 FVQELERYKEE 11 Unmodified _FVQELERYKEE_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS UPN48_class_I_Rep_2 6 490.9148864746094 3 490.580546 1468.71981 0.22832 0.00011201 0.20623 0.00010117 0.43455 0.00021318 490.58061788910106 37.694 0.58183 41.41 41.015 41.597 3.7164 83 61 2 0 0 0 0.6724 1 6514 6514 1.2148 0 1 119720 9554 5315 5858 5864 11919 11919 0.004197867269567723 FVQLFREAL 9 Unmodified _FVQLFREAL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN48_class_I_Rep_3 7 562.3214111328125 2 561.818941 1121.62333 0.33116 0.00018605 0.11965 6.7223E-05 0.45081 0.00025327 561.8188599701042 49.165 1.2915 52.794 52.22 53.512 3.6291 206 92 3 0 0 0 0.41259 1 9678 9678 7.2892 0.56607 1 825950 9555 3242 5859 5865 11920 11920 0.06738308748322197 FVRLHVPTH 9 Unmodified _FVRLHVPTH_ 0 0 0 REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron MSMS UPN46_class_I_Rep_3 1 553.3165283203125 2 553.3169 1104.61925 NaN NaN NaN NaN NaN NaN NaN 45.582 1 45.582 45.082 46.082 0 0 0 0 0.38299 1 9281 9281 4.756 0 1 + 9556 17941 5860 5866 11921 11921 0.07112264045281336 FVRLLVKAFLI 11 Unmodified _FVRLLVKAFLI_ 0 0 0 REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.7990417480469 3 440.291831 1317.85366 0.090666 3.9919E-05 0.86143 0.00037928 0.9521 0.0004192 440.29215284911936 62.596 0.081802 62.596 62.558 62.64 0 10 8 2 0 0 0 22.551 1 13997 13997 0.094841 0.094841 1 99357 + 9557 28394 5861 5867 11922 11922 0.20745142081136692 FVRLLVKAFLI 11 Unmodified _FVRLLVKAFLI_ 0 0 0 REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.62664794921875 3 440.291831 1317.85366 0.093257 4.106E-05 1.1268 0.00049611 1.22 0.00053717 440.29220953294475 63.442 0.14877 63.442 63.392 63.541 0 24 17 2 0 0 0 22.551 1 14257 14257 0.094841 0.094841 1 138280 + 9558 28394 5861 5867 11923 11923 0.20745142081136692 FVRLLVKAFLI 11 Unmodified _FVRLLVKAFLI_ 0 0 0 REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.7994689941406 3 440.291831 1317.85366 0.088628 3.9022E-05 1.1326 0.00049869 1.2213 0.00053771 440.29216819057837 61.924 0.081711 61.924 61.9 61.982 0 8 5 2 0 0 0 22.551 1 13810 13810 0.094841 0.094841 1 136080 + 9559 28394 5861 5867 11924 11924 0.20745142081136692 FVRLLVKAFLI 11 Unmodified _FVRLLVKAFLI_ 0 0 0 REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense REV__L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|64|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.7994384765625 3 440.291831 1317.85366 -0.21716 -9.5612E-05 1.0836 0.0004771 0.86643 0.00038148 440.29227770797746 56.309 0.23189 59.61 59.527 59.759 3.3009 19 14 2 0 0 0 22.551 1 12914 12914 0.094841 0 1 63015 + 9560 28394 5861 5867 11925 11925 0.20745142081136692 FVRPREVLILW 11 Unmodified _FVRPREVLILW_ 0 0 0 L1MCc_dup278|chr2:24559216-24560505:-|1.0845480949839714|0.0395556685314475|4.78|151.0|73|3|anti-sense L1MCc_dup278|chr2:24559216-24560505:-|1.0845480949839714|0.0395556685314475|4.78|151.0|73|3|anti-sense L1MCc_dup278|chr2:24559216-24560505:-|1.0845480949839714|0.0395556685314475|4.78|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_2 6 476.6242980957031 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 105.66 1 109.35 108.85 109.85 3.6901 0 0 0 0.38417 1 24993 24993 0.50596 0.051438 1 9561 11865 5862 5868 11926 11926 0.1485416844466272 FVRRFFKNLL 10 Unmodified _FVRRFFKNLL_ 0 0 0 L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 447.27294921875 3 447.27143 1338.79246 0.17803 7.9628E-05 2.3061 0.0010314 2.4841 0.0011111 447.2727739845923 105.44 0.24346 105.44 105.27 105.52 0 86 30 5 0 0 0 0.5652 1 25723 25723 0.15932 0 1 18243000 9562 13175 5863 5869 11927 11927 0.13661630101728406 FVRRFFKNLL 10 Unmodified _FVRRFFKNLL_ 0 0 0 L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 447.27143 1338.79246 0.17803 7.9628E-05 2.3061 0.0010314 2.4841 0.0011111 447.2727739845923 105.44 0.24346 105.44 105.27 105.52 0 0.059515 -0.001067 NaN 0.15932 86 30 5 NaN NaN NaN NaN 0 NaN NaN 0 18243000 9563 13175 5863 5869 0.13661630101728406 FVRRFFKNLL 10 Unmodified _FVRRFFKNLL_ 0 0 0 L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense L1MEd_dup15036|chr11:43482860-43483859:+|2.8291228051753685|0.2194608704344338|3.69|151.0|52|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 447.27143 1338.79246 0.17475 7.8159E-05 3.1066 0.0013895 3.2813 0.0014676 447.27278520621496 101.52 0.97553 105.32 105.07 106.05 3.7942 -0.059515 7.1653E-06 NaN 0.15932 340 143 4 NaN NaN NaN NaN 0 NaN NaN 0 2691800 9564 13175 5863 5869 0.13661630101728406 FVRRRVLA 8 Unmodified _FVRRRVLA_ 0 0 0 nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 MSMS UPN47_class_I_Rep_1 2 508.8276062011719 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 76.184 1 79.587 79.087 80.087 3.4034 0 0 0 0.40738 1 18840 18840 0.79363 0 1 9565 4459 5864 5870 11928 11928 0.1331227414478917 FVRWRWQD 8 Unmodified _FVRWRWQD_ 0 0 0 REV__nc|ENSG00000159640|P12821-2|ACE REV__nc|ENSG00000159640|P12821-2|ACE MSMS UPN48_class_I_Rep_3 7 596.8031005859375 2 596.804157 1191.59376 NaN NaN NaN NaN NaN NaN NaN 45.556 1 49.193 48.693 49.693 3.6369 0 0 0 0.40604 1 8736 8736 2.5775 0.27475 1 + 9566 19869 5865 5871 11929 11929 0.005627895228371926 FVSFNAPY 8 Unmodified _FVSFNAPY_ 0 0 0 REV__AluSx_dup107834|chr19:41335995-41336296:-|1.0912355328578565|0.0684449921785236|3.99|151.0|16|2|anti-sense REV__AluSx_dup107834|chr19:41335995-41336296:-|1.0912355328578565|0.0684449921785236|3.99|151.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 472.7293701171875 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 95.586 1 95.586 95.086 96.086 0 0 0 0 0.4032 1 23213 23213 6.3541 0.59368 1 + 9567 17132 5866 5872 11930 11930 -0.03001575539622081 FVSGVKNQLL 10 Unmodified _FVSGVKNQLL_ 0 0 0 REV__ENSG00000244623|ENST00000316368|OR2AE1 REV__ENSG00000244623|ENST00000316368|OR2AE1 MSMS UPN47_class_I_Rep_2 3 552.7945556640625 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 69.123 1 72.4 71.9 72.9 3.2761 0 0 0 0.53105 1 16767 16767 3.2813 0.70383 1 + 9568 21342 5867 5873 11931 11931 0.08622291402775772 FVSLCSLWIM 10 Unmodified _FVSLCSLWIM_ 0 0 0 REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|149|1|anti-sense REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|149|1|anti-sense MSMS UPN48_class_I_Rep_2 6 600.2674560546875 2 599.803588 1197.59262 NaN NaN NaN NaN NaN NaN NaN 62.978 1 66.451 65.951 66.951 3.4738 0 0 0 0.53105 1 14121 14121 3.9444 0.66309 1 + 9569 30188 5868 5874 11932 11932 0.0017307104742485535 FVSNRAYLDF 10 Unmodified _FVSNRAYLDF_ 0 0 0 L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|291|2|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|291|2|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|291|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 616.3096313476562 2 616.308938 1230.60332 0.4107 0.00025312 -0.17223 -0.00010614 0.23847 0.00014697 616.308729661378 56.921 0.34822 60.379 60.264 60.613 3.4572 54 30 2 0 0 0 0.56155 1 13038 13038 2.7352 0 1 169930 9570 15006 5869 5875 11933 11933 -0.0027548698230930313 FVSNRAYLDF 10 Unmodified _FVSNRAYLDF_ 0 0 0 L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|291|2|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|291|2|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|291|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 616.3087768554688 2 616.308938 1230.60332 0.51875 0.00031971 -0.2836 -0.00017479 0.23515 0.00014492 616.3086800959464 57.268 0.62081 60.559 60.292 60.913 3.2912 85 51 2 0 0 0 0.56155 2 13130 13130;13171 2.7352 0 1 103230 9571 15006 5869 5875 11934;11935 11934 -0.0027548698230930313 FVTENRRE 8 Unmodified _FVTENRRE_ 0 0 0 REV__L1MC_dup1035|chr2:159656718-159658343:-|1.0369385696176323|0.0165539388385304|5.97|151.0|30|2|sense REV__L1MC_dup1035|chr2:159656718-159658343:-|1.0369385696176323|0.0165539388385304|5.97|151.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.7702026367188 2 525.76998 1049.52541 -0.13792 -7.2513E-05 -0.39357 -0.00020693 -0.53149 -0.00027944 525.76972884992 26.963 0.50887 30.73 30.505 31.014 3.7662 70 40 2 0 0 0 0.82752 1 3948 3948 4.3292 0 1 95038 + 9572 26455 5870 5876 11936 11936 0.0026250015232562873 FVVFFIAF 8 Unmodified _FVVFFIAF_ 0 0 0 REV__ENSG00000168679.18,SLC16A4,chr1,-,I8.1,110375552,110376949|42|6.35|2|intron REV__ENSG00000168679.18,SLC16A4,chr1,-,I8.1,110375552,110376949|42|6.35|2|intron MSMS UPN48_class_I_Rep_3 7 495.2786865234375 2 495.278389 988.542226 NaN NaN NaN NaN NaN NaN NaN 62.238 1 65.749 65.249 66.249 3.5104 0 0 0 0.40581 1 13819 13819 2.8892 0 1 + 9573 20276 5871 5877 11937 11937 0.047496527762405094 FVVFKLIKPD 10 Unmodified _FVVFKLIKPD_ 0 0 0 REV__ENSG00000173530|ENST00000312584|TNFRSF10D REV__ENSG00000173530|ENST00000312584|TNFRSF10D MSMS UPN46_class_I_Rep_3 1 603.3680419921875 2 603.368267 1204.72198 NaN NaN NaN NaN NaN NaN NaN 92.403 1 92.403 91.903 92.903 0 0 0 0 0.53105 1 22362 22362 1.4819 0 1 + 9574 20487 5872 5878 11938 11938 0.1278091199337723 FVVFKLIKPD 10 Unmodified _FVVFKLIKPD_ 0 0 0 REV__ENSG00000173530|ENST00000312584|TNFRSF10D REV__ENSG00000173530|ENST00000312584|TNFRSF10D MSMS UPN47_class_I_Rep_3 4 603.3961181640625 2 603.368267 1204.72198 NaN NaN NaN NaN NaN NaN NaN 88.505 1 91.899 91.399 92.399 3.3931 0 0 0 0.53105 1 22198 22198 1.4819 0 1 + 9575 20487 5872 5878 11939 11939 0.1278091199337723 FVVFKLIKPD 10 Unmodified _FVVFKLIKPD_ 0 0 0 REV__ENSG00000173530|ENST00000312584|TNFRSF10D REV__ENSG00000173530|ENST00000312584|TNFRSF10D MSMS UPN48_class_I_Rep_1 5 603.3678588867188 2 603.368267 1204.72198 NaN NaN NaN NaN NaN NaN NaN 73.441 1 76.922 76.422 77.422 3.4812 0 0 0 0.53105 1 17306 17306 1.4819 0 1 + 9576 20487 5872 5878 11940 11940 0.1278091199337723 FVVFSAKILH 10 Unmodified _FVVFSAKILH_ 0 0 0 L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|114|1|anti-sense L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|114|1|anti-sense L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|114|1|anti-sense MSMS UPN46_class_I_Rep_3 1 580.8465576171875 2 580.844959 1159.67537 NaN NaN NaN NaN NaN NaN NaN 92.123 1 92.123 91.623 92.623 0 0 0 0 0.53105 1 22281 22281 1.6526 0 1 9577 10741 5873 5879 11941 11941 0.10191472162091486 FVVHRRFV 8 Unmodified _FVVHRRFV_ 0 0 0 ENST00000472200.1_1_3:136538525-136538843:+|nuORF ENST00000472200.1_1_3:136538525-136538843:+|nuORF ENST00000472200.1_1_3:136538525-136538843:+|nuORF MSMS UPN47_class_I_Rep_1 2 530.7869873046875 2 530.314161 1058.61377 NaN NaN NaN NaN NaN NaN NaN 77.51 1 80.939 80.439 81.439 3.4289 0 0 0 0.40738 1 19234 19234 0.79363 0 1 9578 6930 5874 5880 11942 11942 0.08680585253478057 FVVINKLR 8 Unmodified _FVVINKLR_ 0 0 0 REV__ENST00000528145.5_1_11:46666897-46677909:+|nuORF REV__ENST00000528145.5_1_11:46666897-46677909:+|nuORF MSMS UPN46_class_I_Rep_3 1 494.8204650878906 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 19.324 1 19.324 18.824 19.824 0 0 0 0 0.40738 1 1824 1824 0.79363 0 1 + 9579 22828 5875 5881 11943 11943 0.12862933819144473 FVVKFHLV 8 Unmodified _FVVKFHLV_ 0 0 0 REV__L1MEg_dup6930|chr7:149242325-149243111:+|1.122117341419466|0.1357879327842962|3.05|151.0|38|1|anti-sense REV__L1MEg_dup6930|chr7:149242325-149243111:+|1.122117341419466|0.1357879327842962|3.05|151.0|38|1|anti-sense MSMS UPN46_class_I_Rep_3 1 494.81976318359375 2 494.802563 987.590573 NaN NaN NaN NaN NaN NaN NaN 24.251 1 24.251 23.751 24.751 0 0 0 0 0.40604 1 3161 3161 2.5775 0 1 + 9580 28778 5876 5882 11944 11944 0.09628146416139316 FVVKFILY 8 Unmodified _FVVKFILY_ 0 0 0 REV__L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|66|1|anti-sense REV__L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|66|1|anti-sense MSMS UPN47_class_I_Rep_3 4 514.8136596679688 2 514.812596 1027.61064 NaN NaN NaN NaN NaN NaN NaN 37.639 1 40.88 40.38 41.38 3.2414 0 0 0 0.40738 1 7240 7240 0.79363 0 1 + 9581 27041 5877 5883 11945 11945 0.09793897356121306 FVVLVFKAKK 10 Unmodified _FVVLVFKAKK_ 0 0 0 ENST00000306376.9_1_3:185765504-185765672:-|nuORF ENST00000306376.9_1_3:185765504-185765672:-|nuORF ENST00000306376.9_1_3:185765504-185765672:-|nuORF MSMS UPN48_class_I_Rep_1 5 590.3424072265625 2 589.886627 1177.7587 NaN NaN NaN NaN NaN NaN NaN 54.015 1 57.53 57.03 58.03 3.5143 0 0 0 0.53105 1 11395 11395 0.45834 0 1 9582 6094 5878 5884 11946 11946 0.17693208609921385 FVVMYQNRI 9 Unmodified _FVVMYQNRI_ 0 0 0 REV__ERVL-E-int_dup278|chr1:77706472-77707134:+|3.4694720221880004|0.4616652236534787|2.91|151.0|23|3|sense REV__ERVL-E-int_dup278|chr1:77706472-77707134:+|3.4694720221880004|0.4616652236534787|2.91|151.0|23|3|sense MSMS UPN48_class_I_Rep_3 7 585.31201171875 2 585.310426 1168.6063 NaN NaN NaN NaN NaN NaN NaN 72.449 1 75.975 75.475 76.475 3.5266 0 0 0 0.39428 1 16887 16887 2.0598 0 1 + 9583 23275 5879 5885 11947 11947 0.02874064870889015 FVVNFLLTF 9 Unmodified _FVVNFLLTF_ 0 0 0 Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|60|1|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|60|1|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2947998046875 2 550.312961 1098.61137 NaN NaN NaN NaN NaN NaN NaN 72.038 1 75.564 75.064 76.064 3.5266 0 0 0 0.26661 1 16767 16767 12.532 1.7076 1 9584 479 5880 5886 11948 11948 0.06600692005144992 FVVPIKRD 8 Unmodified _FVVPIKRD_ 0 0 0 L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|74|3|sense L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|74|3|sense L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|74|3|sense MSMS UPN48_class_I_Rep_2 6 487.2928161621094 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 82.069 1 85.738 85.238 86.238 3.669 0 0 0 0.40738 1 19491 19491 0.79363 0 1 9585 13113 5881 5887 11949 11949 0.08826654548136048 FVVYALIGG 9 Unmodified _FVVYALIGG_ 0 0 0 REV__L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|66|3|anti-sense REV__L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|66|3|anti-sense MSMS UPN48_class_I_Rep_1 5 469.7712707519531 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 50.46 1 53.985 53.485 54.485 3.5246 0 0 0 0.3264 1 10307 10307 9.3474 0 1 + 9586 24048 5882 5888 11950 11950 0.05604160908251288 FVVYALIGG 9 Unmodified _FVVYALIGG_ 0 0 0 REV__L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|66|3|anti-sense REV__L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|66|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 469.771240234375 2 469.770929 937.527304 0.095265 4.4753E-05 0.94877 0.0004457 1.044 0.00049046 469.7712400289502 50.145 0.060577 53.766 53.74 53.8 3.621 5 3 2 0 0 0 0.37662 1 10145 10145 9.3474 0 1 519080 + 9587 24048 5882 5888 11951 11951 0.05604160908251288 FVVYAVQF 8 Unmodified _FVVYAVQF_ 0 0 0 REV__ENST00000357802.6_1_22:42970741-42976277:-|nuORF REV__ENST00000357802.6_1_22:42970741-42976277:-|nuORF MSMS UPN46_class_I_Rep_3 1 486.7652587890625 2 486.763104 971.511654 NaN NaN NaN NaN NaN NaN NaN 55.14 1 55.14 54.64 55.64 0 0 0 0 0.40364 1 11977 11977 5.7604 0 1 + 9588 21007 5883 5889 11952 11952 0.024758743911888814 FVWGHRAK 8 Unmodified _FVWGHRAK_ 0 0 0 THE1B_dup3582|chr3:33547117-33547486:+|2.537492698489147|0.3855356795885497|2.72|151.0|26|3|anti-sense THE1B_dup3582|chr3:33547117-33547486:+|2.537492698489147|0.3855356795885497|2.72|151.0|26|3|anti-sense THE1B_dup3582|chr3:33547117-33547486:+|2.537492698489147|0.3855356795885497|2.72|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 500.77960205078125 2 500.777411 999.540269 NaN NaN NaN NaN NaN NaN NaN 34.277 1 37.792 37.292 38.292 3.5144 0 0 0 0.40738 1 5461 5461 0.79363 0.10326 1 9589 32884 5884 5890 11953 11953 0.04048036810991107 FVWMRIIY 8 Unmodified _FVWMRIIY_ 0 0 0 REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|4|1|sense REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 564.3076782226562 2 564.307155 1126.59976 NaN NaN NaN NaN NaN NaN NaN 110.89 1 114.56 114.06 115.06 3.6654 0 0 0 0.40738 1 26309 26309 0.79363 0 1 + 9590 24615 5885 5891 11954 11954 0.041521717101659306 FVYCDMLFW 9 Unmodified _FVYCDMLFW_ 0 0 0 Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_1 5 612.2659912109375 2 612.266838 1222.51912 NaN NaN NaN NaN NaN NaN NaN 52.419 1 55.941 55.441 56.441 3.5227 0 0 0 0.1724 1 10900 10900 18.135 2.2878 1 9591 475 5886 5892 11955 11955 -0.08323477395060763 FVYCDMLFW 9 Unmodified _FVYCDMLFW_ 0 0 0 Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 612.2647705078125 2 612.266838 1222.51912 NaN NaN NaN NaN NaN NaN NaN 51.933 1 55.572 55.072 56.072 3.639 0 0 0 0.26661 1 10746 10746 12.532 0.89125 1 9592 475 5886 5892 11956 11956 -0.08323477395060763 FVYCDMLFW 9 Unmodified _FVYCDMLFW_ 0 0 0 Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_3 7 612.264404296875 2 612.266838 1222.51912 NaN NaN NaN NaN NaN NaN NaN 52.39 1 55.988 55.488 56.488 3.5979 0 0 0 0.26661 1 10815 10815 12.532 1.7076 1 9593 475 5886 5892 11957 11957 -0.08323477395060763 FVYEQFQV 8 Unmodified _FVYEQFQV_ 0 0 0 REV__ENSG00000184344|ENST00000329913|GDF3 REV__ENSG00000184344|ENST00000329913|GDF3 MSMS UPN48_class_I_Rep_3 7 530.260986328125 2 530.260925 1058.5073 NaN NaN NaN NaN NaN NaN NaN 52.156 1 55.754 55.254 56.254 3.5979 0 0 0 0.39819 1 10752 10752 8.5933 0 1 + 9594 20816 5887 5893 11958 11958 -0.019616348223962632 FVYFFKKQ 8 Unmodified _FVYFFKKQ_ 0 0 0 L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|42|1|anti-sense L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|42|1|anti-sense L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.175537109375 2 553.805303 1105.59605 -0.25632 -0.00014195 1.0442 0.00057826 0.78783 0.0004363 554.3049084553928 25.518 0.032347 28.868 28.84 28.872 3.3509 4 2 2 0 0 0 0.82752 1 3596 3596 0.69038 0 1 12268 9595 9988 5888 5894 11959 11959 0.04747825207959977 FVYFPVIF 8 Unmodified _FVYFPVIF_ 0 0 0 REV__L1ME4b_dup21767|chr22:41842127-41842645:-|1.4538329507329617|0.0474496161867102|4.94|151.0|6|1|sense REV__L1ME4b_dup21767|chr22:41842127-41842645:-|1.4538329507329617|0.0474496161867102|4.94|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 516.2996826171875 2 516.283672 1030.55279 NaN NaN NaN NaN NaN NaN NaN 59.398 1 62.885 62.385 63.385 3.4868 0 0 0 0.4032 1 13026 13026 6.3541 2.7576 1 + 9596 28287 5889 5895 11960 11960 0.03873635430659306 FVYKLNVP 8 Unmodified _FVYKLNVP_ 0 0 0 REV__L1MB7_dup12292|chrX:74225763-74226667:+|8.52327501848949|0.1587726580678805|5.75|151.0|41|1|anti-sense REV__L1MB7_dup12292|chrX:74225763-74226667:+|8.52327501848949|0.1587726580678805|5.75|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.2840576171875 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 52.995 1 56.19 55.69 56.69 3.1948 0 0 0 0.40364 1 11918 11918 5.7604 0.52976 1 + 9597 26128 5890 5896 11961 11961 0.06371849799552365 FVYKYFVYR 9 Unmodified _FVYKYFVYR_ 0 0 0 REV__L1MC1_dup4653|chr5:123409991-123412037:+|1.96515311883556|0.1765361134628471|3.48|151.0|139|3|anti-sense REV__L1MC1_dup4653|chr5:123409991-123412037:+|1.96515311883556|0.1765361134628471|3.48|151.0|139|3|anti-sense MSMS UPN48_class_I_Rep_2 6 642.8431396484375 2 642.842416 1283.67028 NaN NaN NaN NaN NaN NaN NaN 45.503 1 49.261 48.761 49.761 3.7579 0 0 0 0.4007 1 8791 8791 0.52476 0 1 + 9598 26564 5891 5897 11962 11962 0.039791682994746225 FVYQSLTQI 9 Unmodified _FVYQSLTQI_ 0 0 0 REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 549.7953491210938 2 549.795132 1097.57571 0.51658 0.00028401 0.18378 0.00010104 0.70036 0.00038505 549.7951153744689 71.392 0.73016 74.858 74.543 75.274 3.466 129 67 3 0 0 0 0.066364 1 16755 16755 41.956 6.3433 1 570530 + 9599 22196 5892 5898 11963 11963 0.030826097574845335 FVYVYIKK 8 Unmodified _FVYVYIKK_ 0 0 0 L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|113|2|anti-sense L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|113|2|anti-sense L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|113|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.3160400390625 2 530.315503 1058.61645 NaN NaN NaN NaN NaN NaN NaN 33.602 1 37.263 36.763 37.763 3.6607 0 0 0 0.40738 1 5323 5323 0.79363 0 1 9600 10170 5893 5899 11964 11964 0.08948995867763188 FVYWIKFVM 9 Unmodified _FVYWIKFVM_ 0 0 0 REV__L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|172|1|anti-sense REV__L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|172|1|anti-sense MSMS UPN47_class_I_Rep_2 3 616.8297729492188 2 616.830463 1231.64637 NaN NaN NaN NaN NaN NaN NaN 64.01 1 67.266 66.766 67.766 3.2556 0 0 0 0.40038 1 15220 15220 0.6015 0.076735 1 + 9601 30006 5894 5900 11965 11965 0.03981611541416896 FVYYNYYN 8 Unmodified _FVYYNYYN_ 0 0 0 L1ME4b_dup15713|chr13:24436956-24437676:+|1.906010993084143|0.4135719537444728|2.2|151.0|47|2|anti-sense L1ME4b_dup15713|chr13:24436956-24437676:+|1.906010993084143|0.4135719537444728|2.2|151.0|47|2|anti-sense L1ME4b_dup15713|chr13:24436956-24437676:+|1.906010993084143|0.4135719537444728|2.2|151.0|47|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.25048828125 2 573.250557 1144.48656 NaN NaN NaN NaN NaN NaN NaN 118.05 1 121.48 120.98 121.98 3.4238 0 0 0 0.40738 1 29105 29105 0.79363 0 1 9602 12893 5895 5901 11966 11966 -0.0799022520204744 FWAHPQTREA 10 Unmodified _FWAHPQTREA_ 0 0 0 ENST00000246672.3_1_17:38252288-38252739:-|nuORF ENST00000246672.3_1_17:38252288-38252739:-|nuORF ENST00000246672.3_1_17:38252288-38252739:-|nuORF MSMS UPN47_class_I_Rep_2 3 621.80419921875 2 621.804354 1241.59415 NaN NaN NaN NaN NaN NaN NaN 55.367 1 58.677 58.177 59.177 3.3102 0 0 0 0.53105 1 12591 12591 1.4819 0 1 9603 5913 5896 5902 11967 11967 -0.01697835547952309 FWCCVLTLKL 10 Unmodified _FWCCVLTLKL_ 0 0 0 ENST00000341459.7_1_15:48428917-48428965:+|nuORF ENST00000341459.7_1_15:48428917-48428965:+|nuORF ENST00000341459.7_1_15:48428917-48428965:+|nuORF MSMS UPN48_class_I_Rep_1 5 613.3267822265625 2 613.32723 1224.63991 NaN NaN NaN NaN NaN NaN NaN 35.373 1 38.883 38.383 39.383 3.5101 0 0 0 0.53105 1 5777 5777 0.45834 0 1 9604 6233 5897 5903 11968 11968 0.03657350318394492 FWCTHHRA 8 Unmodified _FWCTHHRA_ 0 0 0 L1PB1_dup9089|chr10:72517240-72517780:+|1.866647301512814|0.0485916010540794|5.26|151.0|22|2|anti-sense L1PB1_dup9089|chr10:72517240-72517780:+|1.866647301512814|0.0485916010540794|5.26|151.0|22|2|anti-sense L1PB1_dup9089|chr10:72517240-72517780:+|1.866647301512814|0.0485916010540794|5.26|151.0|22|2|anti-sense MSMS UPN47_class_I_Rep_2 3 529.2431640625 2 529.242878 1056.4712 NaN NaN NaN NaN NaN NaN NaN 25.762 1 29.256 28.756 29.756 3.4945 0 0 0 0.40738 1 3627 3627 0.79363 0 1 9605 15213 5898 5904 11969 11969 -0.05477370480230093 FWDFFFSVN 9 Unmodified _FWDFFFSVN_ 0 0 0 REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|101|2|anti-sense REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|101|2|anti-sense MSMS UPN48_class_I_Rep_1 5 604.773681640625 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 28.71 1 32.267 31.767 32.767 3.5571 0 0 0 0.39428 1 3882 3882 2.0598 0 1 + 9606 26677 5899 5905 11970 11970 -0.061619459310350067 FWDKLFFLL 9 Unmodified _FWDKLFFLL_ 0 0 0 L1M5_dup24184|chr7:101840083-101840881:-|2.267424807598861|0.0153863633133674|7.2|151.0|36|1|anti-sense L1M5_dup24184|chr7:101840083-101840881:-|2.267424807598861|0.0153863633133674|7.2|151.0|36|1|anti-sense L1M5_dup24184|chr7:101840083-101840881:-|2.267424807598861|0.0153863633133674|7.2|151.0|36|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 614.8426513671875 2 614.841885 1227.66922 0.56556 0.00034773 1.1277 0.00069335 1.6933 0.0010411 614.8427248573103 62.403 0.070187 62.403 62.337 62.407 0 11 6 2 0 0 0 0.4823 1 13941 13941 0.45834 0 1 1238100 9607 9122 5900 5906 11971 11971 0.06448953930566859 FWDMRYSRL 9 Unmodified _FWDMRYSRL_ 0 0 0 L1MC4_dup5845|chr4:8207170-8207882:-|1.4500449763169136|0.1874854208776352|2.95|151.0|34|1|anti-sense L1MC4_dup5845|chr4:8207170-8207882:-|1.4500449763169136|0.1874854208776352|2.95|151.0|34|1|anti-sense L1MC4_dup5845|chr4:8207170-8207882:-|1.4500449763169136|0.1874854208776352|2.95|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 637.3130493164062 2 637.310958 1272.60736 0.5385 0.00034319 2.1436 0.0013661 2.6821 0.0017093 637.3120526342962 48.485 0.30334 52.118 51.998 52.301 3.6339 31 23 2 0 0 0 0.49187 1 9658 9658 1.4819 0.41044 1 117750 9608 11512 5901 5907 11972 11972 -0.018037207602219496 FWDTAKAA 8 Unmodified _FWDTAKAA_ 0 0 0 L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|45|3|sense L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|45|3|sense L1PB3_dup606|chr3:122834327-122836103:+|1.5716281650872277|0.0381491219404262|5.36|151.0|45|3|sense MSMS UPN47_class_I_Rep_1 2 455.22650146484375 2 455.226885 908.439217 NaN NaN NaN NaN NaN NaN NaN 95.979 1 99.744 99.244 100.24 3.7648 0 0 0 0.40738 1 23812 23812 0.79363 0 1 9609 15286 5902 5908 11973 11973 -0.018664596824010005 FWDYHFVY 8 Unmodified _FWDYHFVY_ 0 0 0 L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|47|2|anti-sense L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|47|2|anti-sense L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.7608032226562 2 588.761092 1175.50763 0.04605 2.7112E-05 -1.2108 -0.00071288 -1.1648 -0.00068577 588.7603936820675 41.609 0.43869 44.846 44.664 45.103 3.2372 58 38 2 0 0 0 0.82752 1 8495 8495 0.79363 0 1 97104 9610 13666 5903 5909 11974 11974 -0.07310215102529583 FWEDGSVPSP 10 Unmodified _FWEDGSVPSP_ 0 0 0 nc|ENSG00000256660|Q2HXU8-2|CLEC12B;ENSG00000256660|ENST00000338896|CLEC12B nc|ENSG00000256660|Q2HXU8-2|CLEC12B nc|ENSG00000256660|Q2HXU8-2|CLEC12B MSMS UPN47_class_I_Rep_3 4 560.7523193359375 2 560.750921 1119.48729 NaN NaN NaN NaN NaN NaN NaN 40.775 1 44.012 43.512 44.512 3.2372 0 0 0 0.53105 1 8203 8203 5.7319 2.9967 1 9611 5767 5904 5910 11975 11975 -0.06767430552986298 FWEKQFWE 8 Unmodified _FWEKQFWE_ 0 0 0 REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4243948814444902|0.3370285026521366|2.08|134.0|242|3|anti-sense REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4243948814444902|0.3370285026521366|2.08|134.0|242|3|anti-sense MSMS UPN48_class_I_Rep_3 7 600.2789306640625 2 600.279649 1198.54475 NaN NaN NaN NaN NaN NaN NaN 40.396 1 44.047 43.547 44.547 3.6509 0 0 0 0.40753 1 7178 7178 0.6015 0 1 + 9612 30089 5905 5911 11976 11976 -0.0465854355677493 FWELDKLF 8 Unmodified _FWELDKLF_ 0 0 0 L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|70|2|anti-sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|70|2|anti-sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_1 2 549.2854614257812 2 549.286943 1096.55933 NaN NaN NaN NaN NaN NaN NaN 46.765 1 50.46 49.96 50.96 3.6951 0 0 0 0.40472 1 9950 9950 4.3292 0 1 9613 10598 5906 5912 11977 11977 0.014915285913502885 FWFDECFI 8 Unmodified _FWFDECFI_ 0 0 0 L1M4_dup14474|chr12:14448550-14450773:-|1.493444107060901|0.0591448067961528|4.66|150.0|115|2|anti-sense L1M4_dup14474|chr12:14448550-14450773:-|1.493444107060901|0.0591448067961528|4.66|150.0|115|2|anti-sense L1M4_dup14474|chr12:14448550-14450773:-|1.493444107060901|0.0591448067961528|4.66|150.0|115|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.7360229492188 2 553.736228 1105.4579 0.53458 0.00029602 -1.2144 -0.00067244 -0.6798 -0.00037643 553.7352635956616 73.695 0.13701 77.177 77.072 77.209 3.4812 28 15 2 0 0 0 0.82752 1 17365 17365 5.7604 0 1 126010 9614 8840 5907 5913 11978 11978 -0.09060666102823234 FWFEVHYEV 9 Unmodified _FWFEVHYEV_ 0 0 0 L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|142|2|anti-sense L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|142|2|anti-sense L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|142|2|anti-sense MSMS UPN47_class_I_Rep_3 4 628.2925415039062 2 628.292756 1254.57096 NaN NaN NaN NaN NaN NaN NaN 29.905 1 33.229 32.729 33.729 3.3235 0 0 0 0.39428 1 4893 4893 2.0598 0.40713 1 9615 12332 5908 5914 11979 11979 -0.04614274385289718 FWFFAWRF 8 Unmodified _FWFFAWRF_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MSMS UPN46_class_I_Rep_3 1 603.7977294921875 2 603.797812 1205.58107 NaN NaN NaN NaN NaN NaN NaN 19.165 1 19.165 18.665 19.665 0 0 0 0 0.40746 1 1786 1786 0.69038 0.088878 1 9616 3046 5909 5915 11980 11980 -0.013496218693944684 FWFFFLFF 8 Unmodified _FWFFFLFF_ 0 0 0 AluSx1_dup81681|chr14:21254632-21254953:+|1.6752121817306256|0.0183355535499022|6.51|151.0|12|1|anti-sense AluSx1_dup81681|chr14:21254632-21254953:+|1.6752121817306256|0.0183355535499022|6.51|151.0|12|1|anti-sense AluSx1_dup81681|chr14:21254632-21254953:+|1.6752121817306256|0.0183355535499022|6.51|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 600.79833984375 2 600.799489 1199.58443 NaN NaN NaN NaN NaN NaN NaN 113 1 116.66 116.16 117.16 3.6648 0 0 0 0.40738 1 26946 26946 0.79363 0 1 9617 325 5910 5916 11981 11981 -0.007383718154187591 FWFIALAI 8 Unmodified _FWFIALAI_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|216|3|anti-sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|216|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7820129394531 2 490.783839 979.553125 NaN NaN NaN NaN NaN NaN NaN 111.13 1 114.66 114.16 115.16 3.529 0 0 0 0.40738 1 27268 27268 0.79363 0 1 + 9618 29124 5911 5917 11982 11982 0.06253055150489217 FWFLVLLR 8 Unmodified _FWFLVLLR_ 0 0 0 ENST00000412414.6_1_2:207945103-207945412:-|nuORF ENST00000412414.6_1_2:207945103-207945412:-|nuORF ENST00000412414.6_1_2:207945103-207945412:-|nuORF MSMS UPN48_class_I_Rep_2 6 547.3330078125 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 73.166 1 76.731 76.231 77.231 3.5645 0 0 0 0.40625 1 17169 17169 2.3027 0 1 9619 6634 5912 5918 11983 11983 0.10580408341547809 FWFNPSSL 8 Unmodified _FWFNPSSL_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;ENST00000472196.1_1_10:108426948-108434841:-|nuORF nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MULTI-MSMS UPN46_class_I_Rep_3 1 499.7431945800781 2 499.242535 996.470518 -0.028223 -1.409E-05 0.40232 0.00020086 0.3741 0.00018677 499.243805864062 26.513 0.82018 26.513 26.212 27.032 0 155 68 3 0 0 0 0.82752 2 3831 3831;3870 5.2307 0.90143 1 82832 9620 1850 5913 5919 11984;11985 11984 -0.027858866482802114 FWFPMWLP 8 Unmodified _FWFPMWLP_ 0 0 0 L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|31|2|anti-sense L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|31|2|anti-sense L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3350830078125 2 562.275324 1122.53609 NaN NaN NaN NaN NaN NaN NaN 33.384 1 33.384 32.884 33.884 0 0 0 0 0.40738 1 5832 5832 0.79363 0 1 9621 12110 5914 5920 11986 11986 -0.020271887269473154 FWFVRGFVT 9 Unmodified _FWFVRGFVT_ 0 0 0 REV__L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|157|2|anti-sense REV__L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|157|2|anti-sense MSMS UPN47_class_I_Rep_3 4 579.8055419921875 2 579.808377 1157.6022 NaN NaN NaN NaN NaN NaN NaN 68.352 1 71.55 71.05 72.05 3.1977 0 0 0 0.35339 1 16603 16603 7.9102 0.62092 1 + 9622 25447 5915 5921 11987 11987 0.02970343439460521 FWGDIAKEF 9 Unmodified _FWGDIAKEF_ 0 0 0 ENST00000461051.1_1_20:33463718-33470793:+|nuORF;ENST00000497927.5_1_20:33462930-33496606:+|nuORF;ENST00000476922.5_1_20:33464445-33514898:+|nuORF;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2 ENST00000461051.1_1_20:33463718-33470793:+|nuORF ENST00000461051.1_1_20:33463718-33470793:+|nuORF MSMS UPN46_class_I_Rep_3 1 556.7901000976562 2 556.7742 1111.53385 NaN NaN NaN NaN NaN NaN NaN 59.247 1 59.247 58.747 59.747 0 0 0 0 0.15455 1 13088 13088 19.257 3.4098 1 9623 2700 5916 5922 11988 11988 -0.01745945931065762 FWGLLLFA 8 Unmodified _FWGLLLFA_ 0 0 0 REV__PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|55|2|anti-sense REV__PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|55|2|anti-sense MSMS UPN47_class_I_Rep_3 4 483.7756042480469 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 56.057 1 59.229 58.729 59.729 3.1721 0 0 0 0.40581 1 12858 12858 2.8892 0 1 + 9624 32169 5917 5923 11989 11989 0.05332768633468277 FWHCFFML 8 Unmodified _FWHCFFML_ 0 0 0 REV__L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|149|1|anti-sense REV__L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|149|1|anti-sense MSMS UPN47_class_I_Rep_2 3 565.751953125 2 565.751159 1129.48776 NaN NaN NaN NaN NaN NaN NaN 30.165 1 33.647 33.147 34.147 3.4821 0 0 0 0.40738 1 4934 4934 0.79363 0 1 + 9625 30225 5918 5924 11990 11990 -0.0718000563847454 FWHCFGRKD 9 Unmodified _FWHCFGRKD_ 0 0 0 REV__L1PA7_dup304|chr1:92530205-92535921:+|1.633741213489816|0.278375664478837|2.55|151.0|234|2|anti-sense REV__L1PA7_dup304|chr1:92530205-92535921:+|1.633741213489816|0.278375664478837|2.55|151.0|234|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.2767944335938 2 598.276918 1194.53928 NaN NaN NaN NaN NaN NaN NaN 72.517 1 75.99 75.49 76.49 3.4732 0 0 0 0.37476 1 17024 17024 6.7232 0.51738 1 + 9626 30065 5919 5925 11991 11991 -0.05020545620232042 FWHFFNFR 8 Unmodified _FWHFFNFR_ 0 0 0 REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|210|1|anti-sense REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|210|1|anti-sense MSMS UPN48_class_I_Rep_1 5 600.7928466796875 2 600.790518 1199.56648 NaN NaN NaN NaN NaN NaN NaN 41.03 1 44.536 44.036 45.036 3.506 0 0 0 0.40746 1 7430 7430 0.69038 0.088878 1 + 9627 29954 5920 5926 11992 11992 -0.025316940175343916 FWHFPHKI 8 Unmodified _FWHFPHKI_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|208|1|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|208|1|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|208|1|anti-sense MSMS UPN48_class_I_Rep_3 7 556.2874145507812 2 556.295436 1110.57632 NaN NaN NaN NaN NaN NaN NaN 102.16 1 105.94 105.44 106.44 3.776 0 0 0 0.40604 1 24142 24142 2.5775 0.51773 1 9628 13656 5921 5927 11993 11993 0.025454939878500227 FWHIKTQQA 9 Unmodified _FWHIKTQQA_ 0 0 0 REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|61|2|sense REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.80615234375 2 579.806365 1157.59818 0.42825 0.0002483 -0.078194 -4.5337E-05 0.35006 0.00020296 579.8062514111505 40.564 1.3246 44.068 43.628 44.953 3.5048 308 117 3 0 0 0 0.35081 1 7445 7445 10.824 1.4408 1 1012200 + 9629 30085 5922 5928 11994 11994 0.02568253945764809 FWHIKTQQA 9 Unmodified _FWHIKTQQA_ 0 0 0 REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|61|2|sense REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.8067016601562 2 579.806365 1157.59818 0.39936 0.00023155 -0.069832 -4.0489E-05 0.32953 0.00019106 579.8062786662144 40.252 1.4894 43.902 43.478 44.967 3.6509 373 143 4 0 0 0 0.35081 1 7277 7277 10.824 1.4408 1 921200 + 9630 30085 5922 5928 11995 11995 0.02568253945764809 FWHYSFFF 8 Unmodified _FWHYSFFF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MSMS UPN46_class_I_Rep_3 1 590.7662353515625 2 590.766178 1179.5178 NaN NaN NaN NaN NaN NaN NaN 60.563 1 60.563 60.063 61.063 0 0 0 0 0.39408 1 13441 13441 10.183 2.2732 1 9631 4968 5923 5929 11996 11996 -0.06477607377314598 FWILCFAPF 9 Unmodified _FWILCFAPF_ 0 0 0 REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.2892456054688 2 572.288431 1142.56231 0.44789 0.00025632 2.4176 0.0013836 2.8655 0.0016399 572.2896970943137 70.061 0.22964 73.521 73.43 73.66 3.4598 27 19 2 0 0 0 0.2896 1 16315 16315 14.582 2.9414 1 68804 + 9632 26780 5924 5930 11997 11997 -0.0032691955548216356 FWILCFAPF 9 Unmodified _FWILCFAPF_ 0 0 0 REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_1 5 572.2901000976562 2 572.288431 1142.56231 NaN NaN NaN NaN NaN NaN NaN 70.508 1 73.968 73.468 74.468 3.4598 0 0 0 0.22893 1 16436 16436 14.582 2.9414 1 + 9633 26780 5924 5930 11998 11998 -0.0032691955548216356 FWILCFAPF 9 Unmodified _FWILCFAPF_ 0 0 0 REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 571.7885131835938 2 572.288431 1142.56231 0.44789 0.00025632 2.4176 0.0013836 2.8655 0.0016399 572.2896970943137 70.061 0.22964 73.521 73.43 73.66 3.4598 27 19 2 0 0 0 0.12182 1 16308 16308 5.2307 1.2863 1 68804 + 9634 26780 5924 5930 11999 11999 -0.0032691955548216356 FWILCFAPF 9 Unmodified _FWILCFAPF_ 0 0 0 REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 572.7922973632812 2 572.288431 1142.56231 0.52664 0.00030139 2.9723 0.001701 3.499 0.0020024 572.2897323369834 70.267 0.16769 73.78 73.641 73.808 3.5128 17 12 2 0 0 0 0.2896 1 16245 16245 14.582 1.5392 1 53096 + 9635 26780 5924 5930 12000 12000 -0.0032691955548216356 FWILCFAPF 9 Unmodified _FWILCFAPF_ 0 0 0 REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_3 7 572.2901611328125 2 572.288431 1142.56231 NaN NaN NaN NaN NaN NaN NaN 70.111 1 73.623 73.123 74.123 3.5128 0 0 0 0.22893 1 16201 16201 14.582 2.9414 1 + 9636 26780 5924 5930 12001 12001 -0.0032691955548216356 FWILCFAPF 9 Unmodified _FWILCFAPF_ 0 0 0 REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense REV__L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|85|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 572.288431 1142.56231 0.52664 0.00030139 2.9723 0.001701 3.499 0.0020024 572.2897323369834 70.267 0.16769 73.78 73.641 73.808 3.5128 0.12954 0.00041385 NaN 14.582 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 53096 + 9637 26780 5924 5930 -0.0032691955548216356 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 486.9591369628906 3 486.958852 1457.85473 0.14038 6.8357E-05 0.13745 6.6934E-05 0.27783 0.00013529 486.9588016124692 93.193 0.1148 96.817 96.733 96.848 3.624 17 14 2 0 0 0 0.68478 1 22379 22379 0.094841 0 1 82406 + 9638 24026 5925 5931 12002 12002 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 486.958251953125 3 486.958852 1457.85473 0.1403 6.8321E-05 0.11857 5.774E-05 0.25887 0.00012606 486.9588465286156 94.381 0.33896 98.002 97.786 98.125 3.6208 56 39 2 0 0 0 0.68081 1 22675 22675 0.45452 0 1 205910 + 9639 24026 5925 5931 12003 12003 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.9597473144531 3 486.958852 1457.85473 0.23721 0.00011551 0.50851 0.00024763 0.74573 0.00036314 486.95892782905 94.359 0.53771 98.26 98.217 98.755 3.9016 113 72 2 0 0 0 0.68478 1 22389 22389 0.094841 0.094841 1 220080 + 9640 24026 5925 5931 12004 12004 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 486.958852 1457.85473 0.28554 0.00013905 -0.099889 -4.8642E-05 0.18565 9.0406E-05 487.2930776780676 97.868 0.049423 97.868 97.822 97.871 0 0.033977 -0.00030905 NaN 0.45452 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 59291 + 9641 24026 5925 5931 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 486.958852 1457.85473 0.44023 0.00021437 0.23519 0.00011453 0.67543 0.0003289 486.9587105761503 94.423 0.088753 97.895 97.832 97.921 3.472 0.06137 0.00018046 NaN 0.45452 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 64251 + 9642 24026 5925 5931 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 486.958852 1457.85473 0.1403 6.8321E-05 0.11857 5.774E-05 0.25887 0.00012606 486.9588465286156 94.381 0.33896 98.002 97.786 98.125 3.6208 0.16822 1.009E-05 NaN 0.45452 56 39 2 NaN NaN NaN NaN 0 NaN NaN 0 205910 + 9643 24026 5925 5931 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 486.958852 1457.85473 0.14038 6.8357E-05 0.13745 6.6934E-05 0.27783 0.00013529 486.9588016124692 93.193 0.1148 96.817 96.733 96.848 3.624 -0.093023 -5.0218E-05 NaN 0.094841 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 82406 + 9644 24026 5925 5931 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 486.958852 1457.85473 0.25378 0.00012358 0.60575 0.00029498 0.85953 0.00041856 487.293182895103 93.8 0.028992 97.57 97.547 97.576 3.77 -0.26357 0.0007218 NaN 0.45452 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 68948 + 9645 24026 5925 5931 0.14411356450000312 FWINLWLVLRV 11 Unmodified _FWINLWLVLRV_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 486.958852 1457.85473 0.25347 0.00012343 0.223 0.00010859 0.47647 0.00023202 486.9588543842109 93.233 0.025818 97.003 96.99 97.016 3.77 0.093023 7.476E-05 NaN 0.094841 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 28538 + 9646 24026 5925 5931 0.14411356450000312 FWISHFHM 8 Unmodified _FWISHFHM_ 0 0 0 L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|96|2|anti-sense L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|96|2|anti-sense L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|96|2|anti-sense MSMS UPN46_class_I_Rep_3 1 552.81591796875 2 552.75783 1103.50111 NaN NaN NaN NaN NaN NaN NaN 40.051 1 40.051 39.551 40.551 0 0 0 0 0.40738 1 7748 7748 0.79363 0 1 9647 10859 5926 5932 12005 12005 -0.04650431534901145 FWITTYITY 9 Unmodified _FWITTYITY_ 0 0 0 REV__L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|8|2|sense REV__L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 604.3033447265625 2 604.305332 1206.59611 NaN NaN NaN NaN NaN NaN NaN 57.837 1 61.274 60.774 61.774 3.437 0 0 0 0.37476 1 13310 13310 6.7232 0.99131 1 + 9648 28271 5927 5933 12006 12006 0.0010778041726098309 FWITTYITY 9 Unmodified _FWITTYITY_ 0 0 0 REV__L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|8|2|sense REV__L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 604.303955078125 2 604.305332 1206.59611 NaN NaN NaN NaN NaN NaN NaN 58.317 1 61.483 60.983 61.983 3.1658 0 0 0 0.29868 1 13542 13542 10.824 1.4408 1 + 9649 28271 5927 5933 12007 12007 0.0010778041726098309 FWITTYITY 9 Unmodified _FWITTYITY_ 0 0 0 REV__L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|8|2|sense REV__L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 604.3032836914062 2 604.305332 1206.59611 NaN NaN NaN NaN NaN NaN NaN 58.488 1 62.011 61.511 62.511 3.5231 0 0 0 0.37476 1 12679 12679 6.7232 0.99131 1 + 9650 28271 5927 5933 12008 12008 0.0010778041726098309 FWKCLLWV 8 Unmodified _FWKCLLWV_ 0 0 0 L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|57|1|anti-sense L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|57|1|anti-sense L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_2 3 547.7659912109375 2 547.796423 1093.57829 NaN NaN NaN NaN NaN NaN NaN 30.056 1 33.538 33.038 34.038 3.4821 0 0 0 0.40604 1 4900 4900 2.5775 0 1 9651 13200 5928 5934 12009 12009 0.03524786681441583 FWKMKYLV 8 Unmodified _FWKMKYLV_ 0 0 0 Tigger20a_dup478|chr6:80339096-80339893:-|1.0594807124354069|0.1667068162866944|2.67|150.0|5|1|sense Tigger20a_dup478|chr6:80339096-80339893:-|1.0594807124354069|0.1667068162866944|2.67|150.0|5|1|sense Tigger20a_dup478|chr6:80339096-80339893:-|1.0594807124354069|0.1667068162866944|2.67|150.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 557.8107299804688 2 557.809531 1113.60451 NaN NaN NaN NaN NaN NaN NaN 44.554 1 48.191 47.691 48.691 3.6372 0 0 0 0.40625 1 8429 8429 2.3027 0.21673 1 9652 33330 5929 5935 12010 12010 0.05225055852906735 FWKRPVPSV 9 Unmodified _FWKRPVPSV_ 0 0 0 ENST00000446974.1_1_6:36165215-36168233:+|nuORF ENST00000446974.1_1_6:36165215-36168233:+|nuORF ENST00000446974.1_1_6:36165215-36168233:+|nuORF MSMS UPN47_class_I_Rep_3 4 558.2637939453125 2 558.321651 1114.62875 NaN NaN NaN NaN NaN NaN NaN 42.589 1 45.828 45.328 46.328 3.2394 0 0 0 0.4007 1 8753 8753 0.52476 0 1 9653 6795 5930 5936 12011 12011 0.07602032330805741 FWLFIFFGE 9 Unmodified _FWLFIFFGE_ 0 0 0 L1MB3_dup5766|chr6:42681377-42681919:+|1.0559289103935827|0.0855038736812092|3.63|151.0|39|3|anti-sense L1MB3_dup5766|chr6:42681377-42681919:+|1.0559289103935827|0.0855038736812092|3.63|151.0|39|3|anti-sense L1MB3_dup5766|chr6:42681377-42681919:+|1.0559289103935827|0.0855038736812092|3.63|151.0|39|3|anti-sense MSMS UPN47_class_I_Rep_2 3 603.3041381835938 2 603.305136 1204.59572 NaN NaN NaN NaN NaN NaN NaN 46.152 1 49.506 49.006 50.006 3.3534 0 0 0 0.40038 1 9792 9792 0.6015 0 1 9654 10435 5931 5937 12012 12012 0.0016040548809996835 FWLFLWIDT 9 Unmodified _FWLFLWIDT_ 0 0 0 REV__L1MEf_dup4906|chr7:37242042-37243101:-|2.26280372129386|0.0149580725465205|7.24|151.0|46|1|anti-sense REV__L1MEf_dup4906|chr7:37242042-37243101:-|2.26280372129386|0.0149580725465205|7.24|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 620.8233032226562 2 620.823692 1239.63283 NaN NaN NaN NaN NaN NaN NaN 37.82 1 41.485 40.985 41.985 3.6652 0 0 0 0.40038 1 7221 7221 0.6015 0 1 + 9655 28650 5932 5938 12013 12013 0.0226007703383857 FWLLLQLLLLF 11 Unmodified _FWLLLQLLLLF_ 0 0 0 L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|119|1|anti-sense;L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|52|1|anti-sense L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|119|1|anti-sense L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|119|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.2821044921875 3 473.631853 1417.87373 0.22765 0.00010782 -3.8929 -0.0018438 -3.6652 -0.001736 473.6302850297888 43.546 0.030052 43.546 43.521 43.551 0 4 2 2 0 0 0 22.551 1 8699 8699 0.50596 0 1 32301 9656 14939 5933 5939 12014 12014 0.18150893021083903 FWLLRIPWKW 10 Unmodified _FWLLRIPWKW_ 0 0 0 L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|35|3|anti-sense L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|35|3|anti-sense L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 482.28125 3 482.279926 1443.81795 NaN NaN NaN NaN NaN NaN NaN 117.22 1 117.22 116.72 117.72 0 0 0 0 0.53105 1 29050 29050 0.15932 0 1 9657 13378 5934 5940 12015 12015 0.11379104624097636 FWLRRSDEQ 9 Unmodified _FWLRRSDEQ_ 0 0 0 REV__ENSG00000153802|ENST00000283916|TMPRSS11D REV__ENSG00000153802|ENST00000283916|TMPRSS11D MSMS UPN48_class_I_Rep_1 5 618.8095092773438 2 618.809636 1235.60472 NaN NaN NaN NaN NaN NaN NaN 70.547 1 74.007 73.507 74.507 3.4598 0 0 0 0.39428 1 16448 16448 2.0598 0 1 + 9658 19717 5935 5941 12016 12016 -0.003658528935375216 FWLTVPGS 8 Unmodified _FWLTVPGS_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 453.7398986816406 2 453.739628 905.464704 0.018451 8.3721E-06 0.30243 0.00013722 0.32088 0.0001456 453.7396849561686 104.78 0.48684 108.4 108.34 108.83 3.6247 101 70 2 0 0 0 0.82752 1 25282 25282 2.5775 2.5775 1 3633200 + 9659 24793 5936 5942 12017 12017 0.008190148400558428 FWLTVPGS 8 Unmodified _FWLTVPGS_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 453.739628 905.464704 0.070954 3.2195E-05 0.65465 0.00029704 0.7256 0.00032923 453.73983495007275 105.3 0.037041 108.83 108.81 108.85 3.5327 0.30059 0.00046164 NaN 2.5775 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1704800 + 9660 24793 5936 5942 0.008190148400558428 FWLTVPGS 8 Unmodified _FWLTVPGS_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 453.739628 905.464704 -0.14129 -6.411E-05 0.25776 0.00011696 0.11647 5.2845E-05 453.7397486251821 105.03 0.066895 108.56 108.52 108.59 3.5308 0.025961 0.00010148 NaN 2.5775 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2823200 + 9661 24793 5936 5942 0.008190148400558428 FWLTVPGS 8 Unmodified _FWLTVPGS_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 453.739628 905.464704 0.018451 8.3721E-06 0.30243 0.00013722 0.32088 0.0001456 453.7396849561686 104.78 0.48684 108.4 108.34 108.83 3.6247 -0.12503 0.00014201 NaN 2.5775 101 70 2 NaN NaN NaN NaN 0 NaN NaN 0 3633200 + 9662 24793 5936 5942 0.008190148400558428 FWLTVPGS 8 Unmodified _FWLTVPGS_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 453.739628 905.464704 0.16073 7.293E-05 0.070336 3.1914E-05 0.23107 0.00010484 453.7396069119113 104.71 0.47556 108.4 108.38 108.86 3.6901 -0.12805 -6.8606E-05 NaN 2.5775 98 72 2 NaN NaN NaN NaN 0 NaN NaN 0 5718000 + 9663 24793 5936 5942 0.008190148400558428 FWLTVPGS 8 Unmodified _FWLTVPGS_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|124|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 453.739628 905.464704 0.17237 7.8211E-05 0.041543 1.885E-05 0.21391 9.7061E-05 453.7396030131661 104.74 0.17472 108.46 108.41 108.59 3.7192 -0.073465 -9.4735E-05 NaN 2.5775 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2594800 + 9664 24793 5936 5942 0.008190148400558428 FWLWALLHSHH 11 Unmodified _FWLWALLHSHH_ 0 0 0 MLT1D_dup12683|chr10:49975628-49976003:-|2.3012504157941094|0.1608731955485856|3.84|151.0|19|3|anti-sense;MLT1D_dup12667|chr10:48044285-48044660:+|1.2104500345422724|0.1461197713403378|3.05|148.0|20|3|anti-sense;MLT1D_dup12661|chr10:47536176-47536551:+|2.6781760960945107|0.1655321401649377|4.02|151.0|20|3|anti-sense MLT1D_dup12683|chr10:49975628-49976003:-|2.3012504157941094|0.1608731955485856|3.84|151.0|19|3|anti-sense MLT1D_dup12683|chr10:49975628-49976003:-|2.3012504157941094|0.1608731955485856|3.84|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_2 6 483.2728271484375 3 482.919168 1445.73567 NaN NaN NaN NaN NaN NaN NaN 35.047 1 38.721 38.221 39.221 3.6735 0 0 0 0.38417 1 5726 5726 0.50596 0 1 9665 16328 5937 5943 12018 12018 0.030635825451781784 FWMIIELPA 9 Unmodified _FWMIIELPA_ 0 0 0 REV__L1PA6_dup3736|chrX:86002435-86008415:+|1.7317089423673095|0.0401035919495761|5.43|151.0|247|2|anti-sense REV__L1PA6_dup3736|chrX:86002435-86008415:+|1.7317089423673095|0.0401035919495761|5.43|151.0|247|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2992553710938 2 560.298996 1118.58344 NaN NaN NaN NaN NaN NaN NaN 43.869 1 47.227 46.727 47.727 3.358 0 0 0 0.39518 1 9092 9092 1.8442 0 1 + 9666 29891 5938 5944 12019 12019 0.02889045753386199 FWNREAAEAL 10 Unmodified _FWNREAAEAL_ 0 0 0 ENSG00000163283|ENST00000392027|ALPP ENSG00000163283|ENST00000392027|ALPP ENSG00000163283|ENST00000392027|ALPP MULTI-MSMS UPN48_class_I_Rep_2 6 603.7987060546875 2 603.798737 1205.58292 0.41584 0.00025108 0.093596 5.6513E-05 0.50943 0.0003076 603.7987436292843 43.12 0.88124 46.882 46.535 47.417 3.7617 94 69 2 0 0 0 0.56033 1 8004 8004 3.5965 0 1 138300 9667 3994 5939 5945 12020 12020 -0.011646576420844212 FWPLLVVHL 9 Unmodified _FWPLLVVHL_ 0 0 0 REV__L1PA4_dup7287|chrX:75313522-75319657:-|3.1399488197313667|0.3453227966389521|3.18|151.0|301|2|anti-sense REV__L1PA4_dup7287|chrX:75313522-75319657:-|3.1399488197313667|0.3453227966389521|3.18|151.0|301|2|anti-sense MSMS UPN47_class_I_Rep_1 2 562.334716796875 2 562.33677 1122.65899 NaN NaN NaN NaN NaN NaN NaN 110.12 1 113.71 113.21 114.21 3.5835 0 0 0 0.39326 1 27161 27161 2.3027 0.24298 1 + 9668 29672 5940 5946 12021 12021 0.10256390996005393 FWPLWVKSA 9 Unmodified _FWPLWVKSA_ 0 0 0 REV__MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|5|2|sense REV__MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 567.3107299804688 2 567.310752 1132.60695 NaN NaN NaN NaN NaN NaN NaN 12.312 1 12.312 11.812 12.812 0 0 0 0 0.40098 1 80 80 0.45834 0 1 + 9669 31751 5941 5947 12022 12022 0.045952275822401134 FWPRWHDR 8 Unmodified _FWPRWHDR_ 0 0 0 REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|10|1|sense REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 600.2994384765625 2 600.296499 1198.57845 NaN NaN NaN NaN NaN NaN NaN 64.025 1 67.381 66.881 67.881 3.3557 0 0 0 0.40746 1 15187 15187 0.69038 0 1 + 9670 32178 5942 5948 12023 12023 -0.012900772743478228 FWPSVNSAL 9 Unmodified _FWPSVNSAL_ 0 0 0 nc|ENSG00000188672|P18577-8|RHCE;nc|ENSG00000188672|P18577-7|RHCE;nc|ENSG00000188672|P18577-2|RHCE;nc|ENSG00000188672|P18577-5|RHCE;nc|ENSG00000188672|P18577-6|RHCE;ENST00000527187.5_1_1:25712128-25747316:-|nuORF;ENSG00000188672|ENST00000294413|RHCE nc|ENSG00000188672|P18577-8|RHCE nc|ENSG00000188672|P18577-8|RHCE MULTI-MSMS UPN48_class_I_Rep_1 5 510.76141357421875 2 510.761092 1019.50763 0.35317 0.00018039 0.061515 3.142E-05 0.41469 0.00021181 510.76098877108996 63.981 0.49805 67.439 67.056 67.554 3.4578 55 36 2 0 0 0 0.42249 1 14463 14463 6.7232 1.4925 1 104170 9671 5244 5943 5949 12024 12024 -0.0013421510253692759 FWPSVNSAL 9 Unmodified _FWPSVNSAL_ 0 0 0 nc|ENSG00000188672|P18577-8|RHCE;nc|ENSG00000188672|P18577-7|RHCE;nc|ENSG00000188672|P18577-2|RHCE;nc|ENSG00000188672|P18577-5|RHCE;nc|ENSG00000188672|P18577-6|RHCE;ENST00000527187.5_1_1:25712128-25747316:-|nuORF;ENSG00000188672|ENST00000294413|RHCE nc|ENSG00000188672|P18577-8|RHCE nc|ENSG00000188672|P18577-8|RHCE MULTI-MSMS UPN48_class_I_Rep_3 7 510.76068115234375 2 510.761092 1019.50763 0.30912 0.00015789 -0.1037 -5.2966E-05 0.20543 0.00010492 510.76092902001585 63.55 0.58268 67.059 66.823 67.405 3.5091 62 46 2 0 0 0 0.42249 1 14199 14199 6.7232 0.51738 1 129900 9672 5244 5943 5949 12025 12025 -0.0013421510253692759 FWPTYLIW 8 Unmodified _FWPTYLIW_ 0 0 0 THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|24|2|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|24|2|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|24|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 563.2557983398438 2 563.292028 1124.5695 -0.045682 -2.5733E-05 1.3256 0.00074673 1.28 0.00072099 563.7941655387755 34.552 0.18221 38.238 38.165 38.347 3.6859 20 15 2 0 0 0 0.72333 1 6245 6245 2.5775 0.27475 1 32918 9673 32916 5944 5950 12026 12026 0.012201363166013834 FWQLLKKLSI 10 Unmodified _FWQLLKKLSI_ 0 0 0 L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|66|3|sense L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|66|3|sense L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|66|3|sense MSMS UPN46_class_I_Rep_3 1 638.3958129882812 2 638.394816 1274.77508 NaN NaN NaN NaN NaN NaN NaN 64.538 1 64.538 64.038 65.038 0 0 0 0 0.53105 1 14531 14531 0.40072 0 1 9674 10814 5945 5951 12027 12027 0.14868289776063648 FWQWHVKTM 9 Unmodified _FWQWHVKTM_ 0 0 0 nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-2|BRWD3 nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN47_class_I_Rep_1 2 631.8130493164062 2 631.810593 1261.60663 NaN NaN NaN NaN NaN NaN NaN 37.222 1 40.891 40.391 41.391 3.6692 0 0 0 0.39518 1 7039 7039 1.8442 0.36234 1 9675 4173 5946 5952 12028 12028 -0.01370515409280415 FWRKWRRTTR 10 Unmodified _FWRKWRRTTR_ 0 0 0 REV__nc|ENSG00000164542|Q8NCT3|MATCAP2 REV__nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS UPN46_class_I_Rep_3 1 498.2836608886719 3 498.284733 1491.83237 NaN NaN NaN NaN NaN NaN NaN 12.064 1 12.064 11.564 12.564 0 0 0 0 0.53105 1 15 15 0.15932 0.064481 1 + 9676 32040 5947 5953 12029 12029 0.10612569824957063 FWVPWNQR 8 Unmodified _FWVPWNQR_ 0 0 0 HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|323|3|anti-sense;ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|281|3|anti-sense;HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|193|1|anti-sense HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|323|3|anti-sense HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|323|3|anti-sense MSMS UPN48_class_I_Rep_1 5 566.7400512695312 2 566.787976 1131.5614 NaN NaN NaN NaN NaN NaN NaN 30.484 1 34.026 33.526 34.526 3.542 0 0 0 0.40738 1 4380 4380 0.79363 0 1 9677 7772 5948 5954 12030 12030 0.0008800211983270856 FWWAKRRD 8 Unmodified _FWWAKRRD_ 0 0 0 ENSG00000160472|ENST00000291934|TMEM190 ENSG00000160472|ENST00000291934|TMEM190 ENSG00000160472|ENST00000291934|TMEM190 MSMS UPN48_class_I_Rep_3 7 582.8045043945312 2 582.8067 1163.59885 NaN NaN NaN NaN NaN NaN NaN 18.584 1 22.171 21.671 22.671 3.5874 0 0 0 0.40738 1 1251 1251 0.79363 0.10326 1 9678 3877 5949 5955 12031 12031 0.023590933854620744 FWWCIFIF 8 Unmodified _FWWCIFIF_ 0 0 0 L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|227|3|anti-sense L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|227|3|anti-sense L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|227|3|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7552490234375 2 581.283149 1160.55174 NaN NaN NaN NaN NaN NaN NaN 82.118 1 85.455 84.955 85.955 3.337 0 0 0 0.40738 1 20574 20574 0.79363 0 1 9679 11824 5950 5956 12032 12032 -0.022109022099130016 FWWLVPLHPIN 11 Unmodified _FWWLVPLHPIN_ 0 0 0 REV__L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense REV__L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 474.95184326171875 3 474.595802 1420.76558 0.21107 0.00010017 2.8003 0.001329 3.0113 0.0014292 474.5972540981086 102.6 0.061218 106.37 106.33 106.39 3.776 9 8 2 0 0 0 22.551 1 24245 24245 1.2148 1.12 1 75190 + 9680 27950 5951 5957 12033 12033 0.07202521490512481 FWWLVPLHPIN 11 Unmodified _FWWLVPLHPIN_ 0 0 0 REV__L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense REV__L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 474.595802 1420.76558 0.21869 0.00010379 4.5164 0.0021434 4.735 0.0022472 474.59827528554615 102.85 0.028076 106.56 106.54 106.57 3.7108 0.094436 0.0021077 NaN 1.2148 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 61524 + 9681 27950 5951 5957 0.07202521490512481 FWWPYVGP 8 Unmodified _FWWPYVGP_ 0 0 0 REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|85|2|anti-sense REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|85|2|anti-sense MSMS UPN47_class_I_Rep_1 2 526.3617553710938 2 526.255446 1050.49634 NaN NaN NaN NaN NaN NaN NaN 30.906 1 34.643 34.143 35.143 3.7372 0 0 0 0.40738 1 5113 5113 0.79363 0 1 + 9682 32596 5952 5958 12034 12034 -0.02688992406001489 FWWRWWWVQWT 11 Unmodified _FWWRWWWVQWT_ 0 0 0 L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|118|2|anti-sense L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|118|2|anti-sense L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|118|2|anti-sense MSMS UPN47_class_I_Rep_1 2 589.615478515625 3 589.617489 1765.83064 NaN NaN NaN NaN NaN NaN NaN 38.226 1 41.891 41.391 42.391 3.6652 0 0 0 0.38417 1 7344 7344 0 0 1 9683 15209 5953 5959 12035 12035 -0.021644839836653773 FWWRWWWVQWT 11 Unmodified _FWWRWWWVQWT_ 0 0 0 L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|118|2|anti-sense L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|118|2|anti-sense L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|118|2|anti-sense MSMS UPN47_class_I_Rep_3 4 589.2816772460938 3 589.617489 1765.83064 NaN NaN NaN NaN NaN NaN NaN 39.244 1 42.482 41.982 42.982 3.238 0 0 0 0.38417 1 7731 7731 0 0 1 9684 15209 5953 5959 12036 12036 -0.021644839836653773 FWWVLGLA 8 Unmodified _FWWVLGLA_ 0 0 0 LTR12C_dup1136|chr6:38123657-38124882:-|1.3259206908411427|0.0548783341776294|4.59|151.0|31|1|anti-sense;LTR12_dup306|chr6:34439485-34440071:+|1.2307912645149452|0.0017311946567694|9.47|149.0|20|1|anti-sense LTR12C_dup1136|chr6:38123657-38124882:-|1.3259206908411427|0.0548783341776294|4.59|151.0|31|1|anti-sense LTR12C_dup1136|chr6:38123657-38124882:-|1.3259206908411427|0.0548783341776294|4.59|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 496.275634765625 2 496.273638 990.532724 NaN NaN NaN NaN NaN NaN NaN 86.527 1 90.14 89.64 90.64 3.613 0 0 0 0.39167 1 20731 20731 11.114 1.0405 1 9685 15527 5954 5960 12037 12037 0.03707884490688684 FWWVTVKK 8 Unmodified _FWWVTVKK_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|32|1|sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|32|1|sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|32|1|sense MSMS UPN48_class_I_Rep_2 6 547.3142700195312 2 547.313295 1092.61204 NaN NaN NaN NaN NaN NaN NaN 26.334 1 29.967 29.467 30.467 3.6332 0 0 0 0.40738 1 3338 3338 0.79363 0.19213 1 9686 7986 5955 5961 12038 12038 0.06943531444835571 FWYLILILIV 10 Unmodified _FWYLILILIV_ 0 0 0 REV__L1ME3F_dup2956|chr10:128075504-128076204:-|1.6526473246477582|0.0634346394799137|4.7|151.0|52|3|anti-sense REV__L1ME3F_dup2956|chr10:128075504-128076204:-|1.6526473246477582|0.0634346394799137|4.7|151.0|52|3|anti-sense MSMS UPN46_class_I_Rep_3 1 647.0193481445312 2 646.904485 1291.79442 NaN NaN NaN NaN NaN NaN NaN 62.194 1 62.194 61.694 62.694 0 0 0 0 0.53105 1 13893 13893 0.45834 0.057624 1 + 9687 28174 5956 5962 12039 12039 0.1601924606693501 FWYVFEPYL 9 Unmodified _FWYVFEPYL_ 0 0 0 REV__L1PA15_dup2577|chr5:75433821-75435104:-|2.328599346305136|0.027096688319001|6.43|151.0|58|2|anti-sense REV__L1PA15_dup2577|chr5:75433821-75435104:-|2.328599346305136|0.027096688319001|6.43|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 632.3065795898438 2 632.307875 1262.6012 NaN NaN NaN NaN NaN NaN NaN 22.639 1 26.2 25.7 26.7 3.5605 0 0 0 0.40038 1 2237 2237 0.6015 0 1 + 9688 29217 5957 5963 12040 12040 -0.019599157200900663 FYAIHHVQL 9 Unmodified _FYAIHHVQL_ 0 0 0 L1MCa_dup6492|chr16:47192079-47193160:-|1.594983355448292|0.0784491122778136|4.35|151.0|28|2|sense L1MCa_dup6492|chr16:47192079-47193160:-|1.594983355448292|0.0784491122778136|4.35|151.0|28|2|sense L1MCa_dup6492|chr16:47192079-47193160:-|1.594983355448292|0.0784491122778136|4.35|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3040161132812 2 564.303458 1126.59236 0.47209 0.0002664 0.29843 0.00016841 0.77053 0.00043481 564.3034037908269 81.29 0.97658 84.613 84.084 85.061 3.3231 185 110 2 0 0 0 0.33654 1 20230 20230 11.64 1.5664 1 222780 9689 11840 5958 5964 12041 12041 0.03413155434077453 FYALNYSF 8 Unmodified _FYALNYSF_ 0 0 0 L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|310|2|anti-sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|310|2|anti-sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|310|2|anti-sense MSMS UPN48_class_I_Rep_3 7 512.7411499023438 2 512.742368 1023.47018 NaN NaN NaN NaN NaN NaN NaN 28.307 1 32.049 31.549 32.549 3.7424 0 0 0 0.40581 1 3833 3833 2.8892 0 1 9690 12238 5959 5965 12042 12042 -0.040613063681462336 FYASKSSI 8 Unmodified _FYASKSSI_ 0 0 0 L1ME3Cz_dup5192|chr7:44410973-44411907:+|1.0941364353122467|0.0505964629997037|4.43|151.0|31|3|sense L1ME3Cz_dup5192|chr7:44410973-44411907:+|1.0941364353122467|0.0505964629997037|4.43|151.0|31|3|sense L1ME3Cz_dup5192|chr7:44410973-44411907:+|1.0941364353122467|0.0505964629997037|4.43|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 451.7342224121094 2 451.734543 901.454533 0.010634 4.8035E-06 -0.9723 -0.00043922 -0.96166 -0.00043442 451.73409978162687 94.809 0.14323 98.425 98.334 98.477 3.6167 21 17 2 0 0 0 0.82752 1 22822 22822 4.3292 0 1 80022 9691 12780 5960 5966 12043 12043 -0.0001359288519324764 FYASKSSI 8 Unmodified _FYASKSSI_ 0 0 0 L1ME3Cz_dup5192|chr7:44410973-44411907:+|1.0941364353122467|0.0505964629997037|4.43|151.0|31|3|sense L1ME3Cz_dup5192|chr7:44410973-44411907:+|1.0941364353122467|0.0505964629997037|4.43|151.0|31|3|sense L1ME3Cz_dup5192|chr7:44410973-44411907:+|1.0941364353122467|0.0505964629997037|4.43|151.0|31|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 451.734543 901.454533 0.17048 7.7013E-05 -0.9978 -0.00045074 -0.82731 -0.00037373 451.73407241496096 94.847 0.26651 98.749 98.6 98.867 3.9016 0.16171 -7.3557E-06 NaN 4.3292 53 34 2 NaN NaN NaN NaN 0 NaN NaN 0 104490 9692 12780 5960 5966 -0.0001359288519324764 FYCCMGPP 8 Unmodified _FYCCMGPP_ 0 0 0 REV__ENSG00000196081|ENST00000418100|ZNF724 REV__ENSG00000196081|ENST00000418100|ZNF724 MSMS UPN47_class_I_Rep_3 4 459.17205810546875 2 459.171353 916.328152 NaN NaN NaN NaN NaN NaN NaN 82.91 1 86.247 85.747 86.747 3.337 0 0 0 0.40738 1 20786 20786 0.79363 0 1 + 9693 21013 5961 5967 12044 12044 -0.13335881977991448 FYCCMGPP 8 Unmodified _FYCCMGPP_ 0 0 0 REV__ENSG00000196081|ENST00000418100|ZNF724 REV__ENSG00000196081|ENST00000418100|ZNF724 MSMS UPN47_class_I_Rep_3 4 458.7880859375 2 459.171353 916.328152 NaN NaN NaN NaN NaN NaN NaN 85.309 1 88.681 88.181 89.181 3.3716 0 0 0 0.40738 1 21378 21378 0.79363 0 1 + 9694 21013 5961 5967 12045 12045 -0.13335881977991448 FYCELIVY 8 Unmodified _FYCELIVY_ 0 0 0 REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|1|1|sense REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 525.2538452148438 2 525.254254 1048.49396 NaN NaN NaN NaN NaN NaN NaN 30.886 1 34.631 34.131 35.131 3.7449 0 0 0 0.40604 1 5107 5107 2.5775 0 1 + 9695 32736 5962 5968 12046 12046 -0.028352089259897184 FYCKDWFII 9 Unmodified _FYCKDWFII_ 0 0 0 REV__L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|52|2|anti-sense REV__L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|52|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 617.8036499023438 2 617.801903 1233.58925 0.62702 0.00038737 4.2323 0.0026147 4.8593 0.0030021 617.8031026481826 75.091 0.082291 78.656 78.638 78.72 3.5659 16 7 3 0 0 0 0.10817 1 17627 17627 32.305 2.0807 1 434380 + 9696 25059 5963 5969 12047 12047 -0.018198557349251132 FYCKDWFII 9 Unmodified _FYCKDWFII_ 0 0 0 REV__L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|52|2|anti-sense REV__L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|52|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 617.801903 1233.58925 0.46063 0.00028458 3.7861 0.0023391 4.2468 0.0026237 617.803176482902 75.115 0.032066 78.605 78.588 78.62 3.49 -0.03953 -0.00097253 NaN 32.305 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 148730 + 9697 25059 5963 5969 -0.018198557349251132 FYCKDWFII 9 Unmodified _FYCKDWFII_ 0 0 0 REV__L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|52|2|anti-sense REV__L1MA3_dup6096|chr10:68006678-68007702:-|1.7242674880643831|0.033435051351599|5.69|151.0|52|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 617.801903 1233.58925 0.48577 0.00030011 5.2098 0.0032186 5.6956 0.0035188 617.8030802476418 75.082 0.11548 78.672 78.642 78.757 3.59 0.02773 0.0007866 NaN 32.305 25 12 4 NaN NaN NaN NaN 0 NaN NaN 0 353350 + 9698 25059 5963 5969 -0.018198557349251132 FYCYCFWC 8 Unmodified _FYCYCFWC_ 0 0 0 L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense MSMS UPN47_class_I_Rep_2 3 567.6990356445312 2 567.697734 1133.38092 NaN NaN NaN NaN NaN NaN NaN 115.98 1 119.48 118.98 119.98 3.4965 0 0 0 0.40738 1 28300 28300 0.79363 0 1 9699 14695 5964 5970 12048 12048 -0.1804392391516103 FYCYCFWC 8 Unmodified _FYCYCFWC_ 0 0 0 L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense MSMS UPN48_class_I_Rep_2 6 567.697998046875 2 567.697734 1133.38092 NaN NaN NaN NaN NaN NaN NaN 117.17 1 120.83 120.33 121.33 3.6607 0 0 0 0.40738 1 28075 28075 0.79363 0 1 9700 14695 5964 5970 12049 12049 -0.1804392391516103 FYCYCFWC 8 Unmodified _FYCYCFWC_ 0 0 0 L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|88|2|anti-sense MSMS UPN48_class_I_Rep_2 6 567.6989135742188 2 567.697734 1133.38092 NaN NaN NaN NaN NaN NaN NaN 119 1 122.67 122.17 123.17 3.6652 0 0 0 0.40738 1 28550 28550 0.79363 0 1 9701 14695 5964 5970 12050 12050 -0.1804392391516103 FYDLSGDSLFW 11 Unmodified _FYDLSGDSLFW_ 0 0 0 L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|53|1|anti-sense L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|53|1|anti-sense L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_3 7 450.53863525390625 3 450.539799 1348.59757 NaN NaN NaN NaN NaN NaN NaN 98.481 1 102.38 101.88 102.88 3.9022 0 0 0 0.38417 1 23338 23338 2.6312 0.54523 1 9702 9042 5965 5971 12051 12051 -0.0627863028464617 FYDMDCFMM 9 Unmodified _FYDMDCFMM_ 0 0 0 Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|44|2|sense Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|44|2|sense Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|44|2|sense MSMS UPN48_class_I_Rep_2 6 601.7029418945312 2 601.704899 1201.39525 NaN NaN NaN NaN NaN NaN NaN 64.1 1 67.575 67.075 68.075 3.4743 0 0 0 0.38299 1 14463 14463 4.756 2.6963 1 9703 33320 5966 5972 12052 12052 -0.19739639549220556 FYDSIYRK 8 Unmodified _FYDSIYRK_ 0 0 0 L1MB8_dup11459|chr12:79822398-79822934:-|1.4248496516458204|0.1045571023914994|3.77|151.0|18|3|sense L1MB8_dup11459|chr12:79822398-79822934:-|1.4248496516458204|0.1045571023914994|3.77|151.0|18|3|sense L1MB8_dup11459|chr12:79822398-79822934:-|1.4248496516458204|0.1045571023914994|3.77|151.0|18|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 545.7870483398438 2 546.279649 1090.54475 0.61054 0.00033353 -1.7842 -0.00097469 -1.1737 -0.00064116 546.2789383828375 55.475 0.12893 59.031 58.968 59.097 3.5559 14 7 3 0 0 0 0.72333 1 11832 11832 5.7604 0 1 64202 9704 10914 5967 5973 12053 12053 0.0030945644321036525 FYDSIYRK 8 Unmodified _FYDSIYRK_ 0 0 0 L1MB8_dup11459|chr12:79822398-79822934:-|1.4248496516458204|0.1045571023914994|3.77|151.0|18|3|sense L1MB8_dup11459|chr12:79822398-79822934:-|1.4248496516458204|0.1045571023914994|3.77|151.0|18|3|sense L1MB8_dup11459|chr12:79822398-79822934:-|1.4248496516458204|0.1045571023914994|3.77|151.0|18|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 546.279649 1090.54475 0.34817 0.0001902 -1.0012 -0.00054694 -0.65304 -0.00035674 546.2791322398868 55.405 0.18203 58.96 58.864 59.046 3.5554 -0.0011024 0.00010074 NaN 5.7604 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 86385 9705 10914 5967 5973 0.0030945644321036525 FYEECPWY 8 Unmodified _FYEECPWY_ 0 0 0 L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|83|3|anti-sense L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|83|3|anti-sense L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|83|3|anti-sense MSMS UPN47_class_I_Rep_2 3 568.7577514648438 2 568.723318 1135.43208 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.42 116.92 117.92 3.5109 0 0 0 0.40604 1 27719 27719 2.5775 0.27475 1 9706 9741 5968 5974 12054 12054 -0.13021560345123362 FYEEYLSV 8 Unmodified _FYEEYLSV_ 0 0 0 ENST00000451450.1_9:40322801-40324479:+|nuORF;ENST00000435173.1_9:65632066-65661969:+|nuORF;ENST00000333554.4_9:40307429-40337427:+|nuORF;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3 ENST00000451450.1_9:40322801-40324479:+|nuORF ENST00000451450.1_9:40322801-40324479:+|nuORF MSMS UPN46_class_I_Rep_3 1 525.2450561523438 2 525.244941 1048.47533 NaN NaN NaN NaN NaN NaN NaN 19.577 1 19.577 19.077 20.077 0 0 0 0 0.40625 1 1888 1888 2.3027 0.4585 1 9707 1800 5969 5975 12055 12055 -0.04697047296190249 FYERFSFHA 9 Unmodified _FYERFSFHA_ 0 0 0 ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT ENSG00000129673|ENST00000392492|AANAT ENSG00000129673|ENST00000392492|AANAT MSMS UPN47_class_I_Rep_2 3 602.2810668945312 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 33.549 1 36.989 36.489 37.489 3.4398 0 0 0 0.40038 1 5957 5957 0.6015 0 1 9708 2627 5970 5976 12056 12056 -0.0422802532523292 FYETLPPTN 9 Unmodified _FYETLPPTN_ 0 0 0 REV__ENSG00000135655|ENST00000280377|USP15 REV__ENSG00000135655|ENST00000280377|USP15 MSMS UPN47_class_I_Rep_1 2 541.2617797851562 2 541.263665 1080.51278 NaN NaN NaN NaN NaN NaN NaN 57.163 1 60.621 60.121 61.121 3.4572 0 0 0 0.38639 1 13108 13108 3.9444 0.66309 1 + 9709 19149 5971 5977 12057 12057 -0.02425956030560883 FYFCFVKW 8 Unmodified _FYFCFVKW_ 0 0 0 REV__L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|104|1|anti-sense REV__L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|104|1|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2741088867188 2 570.272781 1138.53101 NaN NaN NaN NaN NaN NaN NaN 29.567 1 32.89 32.39 33.39 3.3235 0 0 0 0.40738 1 4798 4798 0.79363 0 1 + 9710 24058 5972 5978 12058 12058 -0.032714925895561464 FYFCSYYK 8 Unmodified _FYFCSYYK_ 0 0 0 L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|64|1|anti-sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|64|1|anti-sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_1 2 560.7446899414062 2 560.744053 1119.47355 NaN NaN NaN NaN NaN NaN NaN 22.783 1 26.488 25.988 26.988 3.7042 0 0 0 0.40738 1 2706 2706 0.79363 0 1 9711 15267 5973 5979 12059 12059 -0.08140379585802293 FYFCWEMN 8 Unmodified _FYFCWEMN_ 0 0 0 REV__L1MB8_dup14901|chr18:24092123-24092802:+|1.4711367673876206|0.0781080409917489|4.24|151.0|32|1|anti-sense REV__L1MB8_dup14901|chr18:24092123-24092802:+|1.4711367673876206|0.0781080409917489|4.24|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2186889648438 2 570.219888 1138.42522 NaN NaN NaN NaN NaN NaN NaN 117.38 1 120.98 120.48 121.48 3.6036 0 0 0 0.40738 1 29098 29098 0.79363 0 1 + 9712 26375 5974 5980 12060 12060 -0.1384519649734557 FYFEPMGVIA 10 Unmodified _FYFEPMGVIA_ 0 0 0 L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|262|2|anti-sense L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|262|2|anti-sense L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|262|2|anti-sense MSMS UPN48_class_I_Rep_1 5 587.2867431640625 2 587.286085 1172.55762 NaN NaN NaN NaN NaN NaN NaN 30.537 1 34.079 33.579 34.579 3.542 0 0 0 0.53105 1 4396 4396 1.6526 0 1 9713 13914 5975 5981 12061 12061 -0.02175848488855081 FYFFAEVFY 9 Unmodified _FYFFAEVFY_ 0 0 0 L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|90|1|anti-sense L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|90|1|anti-sense L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 616.7850952148438 2 616.786776 1231.559 NaN NaN NaN NaN NaN NaN NaN 46.031 1 49.385 48.885 49.885 3.3534 0 0 0 0.28335 1 9755 9755 11.64 0.81637 1 9714 11979 5976 5982 12062 12062 -0.0475189112848966 FYFFFTHEA 9 Unmodified _FYFFFTHEA_ 0 0 0 L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|342|3|anti-sense L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|342|3|anti-sense L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|342|3|anti-sense MSMS UPN48_class_I_Rep_2 6 604.7733154296875 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 112.49 1 116.15 115.65 116.65 3.6648 0 0 0 0.39428 1 26802 26802 2.0598 0 1 9715 14648 5977 5983 12063 12063 -0.06161945931057744 FYFIYPEI 8 Unmodified _FYFIYPEI_ 0 0 0 MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|22|1|anti-sense MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|22|1|anti-sense MER21B_dup924|chr6:20463639-20464219:-|1.3344387139311995|0.0123050269082331|6.76|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 546.275146484375 2 546.276044 1090.53753 NaN NaN NaN NaN NaN NaN NaN 47.626 1 51.26 50.76 51.76 3.6339 0 0 0 0.38547 1 9364 9364 13.508 3.434 1 9716 15878 5978 5984 12064 12064 -0.0041127615718323796 FYFLCIHCM 9 Unmodified _FYFLCIHCM_ 0 0 0 L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|275|2|anti-sense;L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|315|3|anti-sense;L1M1_dup1109|chr2:159637861-159641132:+|1.0043990275583294|0.0217925595117461|5.53|151.0|200|3|anti-sense L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|275|2|anti-sense L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|275|2|anti-sense MSMS UPN48_class_I_Rep_1 5 588.7551879882812 2 588.755584 1175.49661 NaN NaN NaN NaN NaN NaN NaN 69.752 1 73.207 72.707 73.707 3.4548 0 0 0 0.381 1 16204 16204 5.2307 0 1 9717 8483 5979 5985 12065 12065 -0.0841140006432397 FYFLCMHCI 9 Unmodified _FYFLCMHCI_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|247|2|anti-sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|247|2|anti-sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|247|2|anti-sense MSMS UPN48_class_I_Rep_1 5 588.75634765625 2 588.755584 1175.49661 NaN NaN NaN NaN NaN NaN NaN 64.739 1 68.193 67.693 68.693 3.4541 0 0 0 0.381 1 14679 14679 5.2307 0 1 9718 9405 5980 5986 12066 12066 -0.08411400064301233 FYFLPLRV 8 Unmodified _FYFLPLRV_ 0 0 0 L1MA7_dup8172|chr20:8512708-8513088:-|1.397612854702026|0.0041822272329819|8.38|151.0|28|3|anti-sense L1MA7_dup8172|chr20:8512708-8513088:-|1.397612854702026|0.0041822272329819|8.38|151.0|28|3|anti-sense L1MA7_dup8172|chr20:8512708-8513088:-|1.397612854702026|0.0041822272329819|8.38|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_1 2 527.8089599609375 2 527.807845 1053.60114 NaN NaN NaN NaN NaN NaN NaN 97.508 1 101.29 100.79 101.79 3.7861 0 0 0 0.40746 1 24161 24161 0.69038 0 1 9719 10039 5981 5987 12067 12067 0.07648129070571485 FYFRFRGV 8 Unmodified _FYFRFRGV_ 0 0 0 L1PA13_dup2754|chr5:80167080-80167742:-|1.744585362131287|0.0840296998177216|4.38|151.0|22|1|anti-sense;L1PA16_dup12699|chr17:31869663-31870506:-|1.0919257094803676|0.1046281431732534|3.38|151.0|37|2|anti-sense;L1PA14_dup2490|chr12:76061159-76061564:-|1.589601444758804|0.3600132376543047|2.14|151.0|26|3|anti-sense L1PA13_dup2754|chr5:80167080-80167742:-|1.744585362131287|0.0840296998177216|4.38|151.0|22|1|anti-sense L1PA13_dup2754|chr5:80167080-80167742:-|1.744585362131287|0.0840296998177216|4.38|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 546.2921752929688 2 546.292894 1090.57123 NaN NaN NaN NaN NaN NaN NaN 33.06 1 36.515 36.015 37.015 3.4547 0 0 0 0.40604 1 5808 5808 2.5775 0 1 9720 13743 5982 5988 12068 12068 0.02957190125221132 FYFTADMG 8 Unmodified _FYFTADMG_ 0 0 0 L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|99|1|anti-sense L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|99|1|anti-sense L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|99|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 476.19781494140625 2 476.199479 950.384405 -0.80255 -0.00038217 -1.5218 -0.00072467 -2.3243 -0.0011068 476.19843076203114 15.59 0.51318 18.956 18.792 19.305 3.3659 112 56 3 0 0 0 0.82752 1 822 822 0.79363 0 1 43786 9721 8659 5983 5989 12069 12069 -0.09277214545318202 FYFWWIIWCD 10 Unmodified _FYFWWIIWCD_ 0 0 0 REV__L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|40|1|anti-sense REV__L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.5581970214844 3 493.558248 1477.65292 0.12999 6.4158E-05 0.52422 0.00025873 0.65421 0.00032289 493.55847931154904 20.477 0.70908 24.144 23.86 24.569 3.6667 126 72 2 0 0 0 0.56523 1 1819 1819 0.13989 0 1 126330 + 9722 25179 5984 5990 12070 12070 -0.06680495297837297 FYFYDLES 8 Unmodified _FYFYDLES_ 0 0 0 L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|40|1|anti-sense L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|40|1|anti-sense L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_1 2 542.2367553710938 2 542.237116 1082.45968 NaN NaN NaN NaN NaN NaN NaN 119.99 1 123.57 123.07 124.07 3.5842 0 0 0 0.40738 1 29838 29838 0.79363 0 1 9723 12083 5985 5991 12071 12071 -0.07825333813252655 FYGEFMFFF 9 Unmodified _FYGEFMFFF_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|138|2|anti-sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_1 5 617.7664184570312 2 617.767529 1233.5205 NaN NaN NaN NaN NaN NaN NaN 25.065 1 28.632 28.132 29.132 3.5667 0 0 0 0.40038 1 2862 2862 0.6015 0 1 + 9724 24011 5986 5992 12072 12072 -0.08691520034653877 FYGPDSCFQL 10 Unmodified _FYGPDSCFQL_ 0 0 0 REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|114|2|anti-sense REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|114|2|anti-sense MSMS UPN48_class_I_Rep_3 7 588.7557373046875 2 588.755149 1175.49575 NaN NaN NaN NaN NaN NaN NaN 64.448 1 67.956 67.456 68.456 3.5083 0 0 0 0.53105 1 14490 14490 5.2969 0.066215 1 + 9725 28961 5987 5993 12073 12073 -0.08498199908012793 FYGWYFHS 8 Unmodified _FYGWYFHS_ 0 0 0 L1ME1_dup19647|chr10:63173175-63173440:+|1.6600831062819457|0.3779602276930778|2.13|150.0|9|1|anti-sense L1ME1_dup19647|chr10:63173175-63173440:+|1.6600831062819457|0.3779602276930778|2.13|150.0|9|1|anti-sense L1ME1_dup19647|chr10:63173175-63173440:+|1.6600831062819457|0.3779602276930778|2.13|150.0|9|1|anti-sense MSMS UPN47_class_I_Rep_1 2 554.1768188476562 2 553.74016 1105.46577 NaN NaN NaN NaN NaN NaN NaN 25.19 1 28.94 28.44 29.44 3.7495 0 0 0 0.40738 1 3416 3416 0.79363 0 1 9726 12285 5988 5994 12074 12074 -0.08274770791058472 FYHDNTGYF 9 Unmodified _FYHDNTGYF_ 0 0 0 REV__ENSG00000005421|ENST00000222381|PON1 REV__ENSG00000005421|ENST00000222381|PON1 MSMS UPN47_class_I_Rep_2 3 582.2424926757812 2 582.243264 1162.47197 NaN NaN NaN NaN NaN NaN NaN 58.79 1 62.072 61.572 62.572 3.2818 0 0 0 0.39326 1 13636 13636 2.3027 0 1 + 9727 17529 5989 5995 12075 12075 -0.10276297350219465 FYHEAVVLF 9 Unmodified _FYHEAVVLF_ 0 0 0 ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31 ENST00000487623.1_1_2:74718721-74719901:+|nuORF ENST00000487623.1_1_2:74718721-74719901:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 562.7923583984375 2 562.792392 1123.57023 0.51742 0.0002912 -0.14505 -8.1636E-05 0.37237 0.00020957 562.7921779510503 66.861 0.81237 70.312 69.917 70.73 3.4516 78 53 2 0 0 0 0.17468 1 15323 15323 23.148 0 1 230870 9728 2121 5990 5996 12076 12076 0.013389309656531623 FYHFEWML 8 Unmodified _FYHFEWML_ 0 0 0 L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|93|3|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|93|3|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|93|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.28271484375 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 19.249 1 22.646 22.146 23.146 3.3963 0 0 0 0.40738 1 1779 1779 0.79363 0.10326 1 9729 8860 5991 5997 12077 12077 -0.06280984457544037 FYHFEWML 8 Unmodified _FYHFEWML_ 0 0 0 L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|93|3|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|93|3|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|93|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.763427734375 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 20.841 1 24.191 23.691 24.691 3.3496 0 0 0 0.40404 1 2226 2226 5.2307 0.47466 1 9730 8860 5991 5997 12078 12078 -0.06280984457544037 FYHHQEMNT 9 Unmodified _FYHHQEMNT_ 0 0 0 nc|ENSG00000140479|P29122-8|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;ENSG00000140479|ENST00000611716|PCSK6 nc|ENSG00000140479|P29122-8|PCSK6 nc|ENSG00000140479|P29122-8|PCSK6 MSMS UPN47_class_I_Rep_1 2 603.75146484375 2 603.753472 1205.49239 NaN NaN NaN NaN NaN NaN NaN 35.892 1 39.569 39.069 40.069 3.6762 0 0 0 0.39518 1 6635 6635 1.8442 0.6509 1 9731 16698 5992 5998 12079 12079 -0.10213449962043342 FYHIRDDR 8 Unmodified _FYHIRDDR_ 0 0 0 ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-3|CROT ENSG00000005469|ENST00000331536|CROT ENSG00000005469|ENST00000331536|CROT MULTI-MSMS UPN47_class_I_Rep_2 3 561.2769165039062 2 561.277972 1120.54139 0.17266 9.6909E-05 -1.3699 -0.00076887 -1.1972 -0.00067196 561.2770810547216 44.306 0.5509 47.661 47.377 47.927 3.3556 48 35 2 0 0 0 0.82752 1 9297 9297 0.79363 0 1 110100 9732 700 5993 5999 12080 12080 -0.014057936107747082 FYHIYSDF 8 Unmodified _FYHIYSDF_ 0 0 0 Tigger1_dup4621|chr6:2400767-2402357:+|1.309431008797216|0.2325243003819036|2.49|151.0|95|3|anti-sense;Tigger1_dup4161|chr5:77733296-77735151:+|1.123597853811245|0.0509579418027306|4.46|151.0|124|3|anti-sense Tigger1_dup4621|chr6:2400767-2402357:+|1.309431008797216|0.2325243003819036|2.49|151.0|95|3|anti-sense Tigger1_dup4621|chr6:2400767-2402357:+|1.309431008797216|0.2325243003819036|2.49|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_2 6 546.2433471679688 2 546.245275 1090.476 NaN NaN NaN NaN NaN NaN NaN 47.054 1 50.803 50.303 51.303 3.7494 0 0 0 0.34869 1 9263 9263 22.453 3.0136 1 9733 33090 5994 6000 12081 12081 -0.06562207856495661 FYHKYFNYL 9 Unmodified _FYHKYFNYL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MSMS UPN48_class_I_Rep_1 5 647.8167724609375 2 647.816399 1293.61824 NaN NaN NaN NaN NaN NaN NaN 54.418 1 57.933 57.433 58.433 3.5143 0 0 0 0.36505 1 11520 11520 7.2892 2.3922 1 9734 3585 5995 6001 12082 12082 -0.016819951142906575 FYIAKHSIL 9 Unmodified _FYIAKHSIL_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|277|1|anti-sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|277|1|anti-sense MSMS UPN48_class_I_Rep_3 7 546.3191528320312 2 546.316035 1090.61752 NaN NaN NaN NaN NaN NaN NaN 54.316 1 57.886 57.386 58.386 3.5694 0 0 0 0.29868 1 11407 11407 10.824 2.9138 1 + 9735 23734 5996 6002 12083 12083 0.07583210236657578 FYICKIYIH 9 Unmodified _FYICKIYIH_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|17|1|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|17|1|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 600.3214721679688 2 600.31772 1198.62089 NaN NaN NaN NaN NaN NaN NaN 53.98 1 57.495 56.995 57.995 3.5143 0 0 0 0.39428 1 11384 11384 2.0598 0.21551 1 9736 12145 5997 6003 12084 12084 0.029521370189968366 FYIEKDTGD 9 Unmodified _FYIEKDTGD_ 0 0 0 nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1 nc|ENSG00000134765|Q08554-2|DSC1 nc|ENSG00000134765|Q08554-2|DSC1 MULTI-SECPEP UPN47_class_I_Rep_3 4 543.7332153320312 2 544.250754 1086.48696 0.47912 0.00026076 -1.0383 -0.00056512 -0.55922 -0.00030436 544.2500834593874 50.18 0.341 53.406 53.273 53.614 3.2262 21 17 2 0 0 0 0.11598 1 11074 11074 11.64 1.4569 1 62704 9737 2866 5998 6004 12085 12085 -0.052828502728289095 FYIFYYDY 8 Unmodified _FYIFYYDY_ 0 0 0 L1ME4a_dup8259|chr3:184841161-184841686:-|1.1005126705907926|0.0776253685258918|3.83|151.0|18|3|sense L1ME4a_dup8259|chr3:184841161-184841686:-|1.1005126705907926|0.0776253685258918|3.83|151.0|18|3|sense L1ME4a_dup8259|chr3:184841161-184841686:-|1.1005126705907926|0.0776253685258918|3.83|151.0|18|3|sense MSMS UPN47_class_I_Rep_2 3 597.2625732421875 2 597.263133 1192.51171 NaN NaN NaN NaN NaN NaN NaN 66.996 1 70.259 69.759 70.759 3.2636 0 0 0 0.40404 1 16131 16131 5.2307 0.90143 1 9738 12876 5999 6005 12086 12086 -0.07684170399465984 FYIKRIRHLID 11 Unmodified _FYIKRIRHLID_ 0 0 0 REV__L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|50|1|sense REV__L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|50|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 492.2734375 3 491.961144 1472.8616 0.25869 0.00012726 0.19365 9.5268E-05 0.45234 0.00022253 492.29650108703606 39.971 0.073605 39.971 39.918 39.992 0 11 8 2 0 0 0 22.551 1 7718 7718 0.094841 0 1 117230 + 9739 29023 6000 6006 12087 12087 0.14408669330623525 FYIKVQPLIQ 10 Unmodified _FYIKVQPLIQ_ 0 0 0 REV__ENST00000453163.6_1_6:170891974-170892115:-|nuORF REV__ENST00000453163.6_1_6:170891974-170892115:-|nuORF MSMS UPN48_class_I_Rep_3 7 624.8736572265625 2 624.871174 1247.72779 NaN NaN NaN NaN NaN NaN NaN 92.26 1 96.139 95.639 96.639 3.8782 0 0 0 0.53105 1 21878 21878 1.4819 0 1 + 9740 22394 6001 6007 12088 12088 0.11384010505048536 FYILTSKEL 9 Unmodified _FYILTSKEL_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS UPN48_class_I_Rep_3 7 557.8048706054688 2 557.313158 1112.61176 0.4069 0.00022677 0.79836 0.00044493 1.2053 0.0006717 557.8151834259739 61.142 0.25816 64.655 64.528 64.786 3.5129 24 21 2 0 0 0 0.14216 1 13456 13456 26.268 0.86883 1 106940 9741 1217 6002 6008 12089 12089 0.05996066934335431 FYILTTINQ 9 Unmodified _FYILTTINQ_ 0 0 0 REV__HERVK9-int_dup315|chr7:152041271-152043490:-|1.0628868882723146|0.038323247889474|4.79|149.0|116|2|anti-sense REV__HERVK9-int_dup315|chr7:152041271-152043490:-|1.0628868882723146|0.038323247889474|4.79|149.0|116|2|anti-sense MSMS UPN48_class_I_Rep_1 5 556.8026123046875 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.359 1 64.827 64.327 65.327 3.4678 0 0 0 0.34056 1 13645 13645 8.5933 0 1 + 9742 23827 6003 6009 12090 12090 0.04002896274505474 FYINGQYQF 9 Unmodified _FYINGQYQF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS UPN48_class_I_Rep_1 5 590.27783203125 2 590.277106 1178.53966 0.45707 0.0002698 0.14546 8.5864E-05 0.60253 0.00035566 590.2772847653582 69.962 0.45966 73.422 73.226 73.686 3.4598 55 37 2 0 0 0 0.029391 3 16292 16252;16292;16338 57.471 35.725 1 152160 9743 1181 6004 6010 12091;12092;12093 12092 -0.042468474193810835 FYINGQYQF 9 Unmodified _FYINGQYQF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS UPN48_class_I_Rep_2 6 590.2772216796875 2 590.277106 1178.53966 0.47916 0.00028284 0.063503 3.7485E-05 0.54266 0.00032032 590.2771058166612 69.791 0.543 73.313 73.097 73.64 3.5216 57 43 2 0 0 0 0.060667 3 16173 16173;16215;16257 44.407 22.66 1 127770 9744 1181 6004 6010 12094;12095;12096 12094 -0.042468474193810835 FYINGQYQF 9 Unmodified _FYINGQYQF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS UPN48_class_I_Rep_3 7 590.779296875 2 590.277106 1178.53966 0.57195 0.00033761 0.2252 0.00013293 0.79715 0.00047054 590.2769414011544 69.732 0.50634 73.245 73.095 73.601 3.5129 76 39 3 0 0 0 0.0081951 7 16089 16084;16089;16128;16130;16152;16170;16176 71.134 44.25 1 132110 9745 1181 6004 6010 12097;12098;12099;12100;12101;12102;12103 12098 -0.042468474193810835 FYIPFRRS 8 Unmodified _FYIPFRRS_ 0 0 0 REV__Tigger1_dup9806|chr13:110659530-110660760:-|2.2604995494698814|0.4960306349314937|2.19|151.0|78|3|anti-sense REV__Tigger1_dup9806|chr13:110659530-110660760:-|2.2604995494698814|0.4960306349314937|2.19|151.0|78|3|anti-sense MSMS UPN48_class_I_Rep_2 6 543.297607421875 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 30.646 1 34.281 33.781 34.781 3.6351 0 0 0 0.40738 1 4514 4514 0.79363 0 1 + 9746 32573 6005 6011 12104 12104 0.04289172779635919 FYIWVDITF 9 Unmodified _FYIWVDITF_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|173|1|anti-sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|173|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.3067016601562 2 602.307875 1202.6012 NaN NaN NaN NaN NaN NaN NaN 81.764 1 85.449 84.949 85.949 3.685 0 0 0 0.39428 1 19367 19367 2.0598 0 1 + 9747 24951 6006 6012 12105 12105 0.008000842798765007 FYKFFYRH 8 Unmodified _FYKFFYRH_ 0 0 0 REV__L1MB4_dup6359|chr12:96343597-96344835:+|1.009422724888967|0.0283436765966484|5.15|151.0|48|1|anti-sense REV__L1MB4_dup6359|chr12:96343597-96344835:+|1.009422724888967|0.0283436765966484|5.15|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_1 5 604.3063354492188 2 604.306001 1206.59745 NaN NaN NaN NaN NaN NaN NaN 83.466 1 87.053 86.553 87.553 3.5871 0 0 0 0.40746 1 19962 19962 0.69038 0 1 + 9748 25996 6007 6013 12106 12106 0.002414592966943019 FYKHIPLCI 9 Unmodified _FYKHIPLCI_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|42|1|anti-sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|42|1|anti-sense MSMS UPN48_class_I_Rep_3 7 567.3130493164062 2 567.312438 1132.61032 NaN NaN NaN NaN NaN NaN NaN 43.978 1 47.616 47.116 48.116 3.6385 0 0 0 0.39326 1 8250 8250 2.3027 0.4585 1 + 9749 28541 6008 6014 12107 12107 0.049321543645874044 FYKKVKPDP 9 Unmodified _FYKKVKPDP_ 0 0 0 REV__ENST00000474239.1_1_1:11724615-11732081:+|nuORF REV__ENST00000474239.1_1_1:11724615-11732081:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 560.7966918945312 2 561.321317 1120.62808 0.34982 0.00019636 2.4457 0.0013729 2.7956 0.0015692 561.3227597083815 66.721 0.18489 70.078 69.907 70.092 3.3576 15 12 2 0 0 0 0.12235 1 15983 15983 4.756 1.1595 1 59274 + 9750 18609 6009 6015 12108 12108 0.07259192891092425 FYKTSYQVM 9 Unmodified _FYKTSYQVM_ 0 0 0 L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|10|2|sense;L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|10|2|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|10|2|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 583.7828369140625 2 583.781167 1165.54778 NaN NaN NaN NaN NaN NaN NaN 41.683 1 41.683 41.183 42.183 0 0 0 0 0.38916 1 8191 8191 3.2813 0.54611 1 9751 11238 6010 6016 12109 12109 -0.02837036494270251 FYKTYKKL 8 Unmodified _FYKTYKKL_ 0 0 0 AluJb_dup77071|chr11:33866353-33866630:+|1.6679018650434765|0.1300343024649473|3.68|151.0|11|3|sense AluJb_dup77071|chr11:33866353-33866630:+|1.6679018650434765|0.1300343024649473|3.68|151.0|11|3|sense AluJb_dup77071|chr11:33866353-33866630:+|1.6679018650434765|0.1300343024649473|3.68|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 545.8287353515625 2 545.81841 1089.62227 NaN NaN NaN NaN NaN NaN NaN 53.551 1 57.079 56.579 57.579 3.5278 0 0 0 0.39996 1 12008 12008 7.9102 0 1 9752 66 6011 6017 12110 12110 0.08104094379405069 FYKYFMCR 8 Unmodified _FYKYFMCR_ 0 0 0 REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|98|2|anti-sense REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|98|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.2675170898438 2 579.267173 1156.51979 0.47343 0.00027424 0.80895 0.0004686 1.2824 0.00074284 579.2676345173437 77.271 0.5765 80.883 80.647 81.224 3.6116 104 56 2 0 0 0 0.82752 1 18265 18265 13.508 13.508 1 144940 + 9753 26778 6012 6018 12111 12111 -0.05220637955358143 FYLADSNFLL 10 Unmodified _FYLADSNFLL_ 0 0 0 REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|134|2|anti-sense REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|134|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 602.3102416992188 2 601.808239 1201.60193 0.45089 0.00027135 -0.07364 -4.4317E-05 0.37725 0.00022703 601.8082352005778 75.728 0.24411 79.228 79.179 79.423 3.4996 52 23 3 0 0 0 0.30128 1 17957 17957 32.786 0 1 418110 + 9754 25189 6013 6019 12112 12112 0.009188789289510169 FYLADSNFLL 10 Unmodified _FYLADSNFLL_ 0 0 0 REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|134|2|anti-sense REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|134|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 601.808239 1201.60193 0.48021 0.00028899 0.3078 0.00018524 0.78801 0.00047423 601.8083578236633 75.319 0.13147 78.909 78.813 78.944 3.59 -0.15948 0.00033031 NaN 32.786 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 172330 + 9755 25189 6013 6019 0.009188789289510169 FYLAEDFF 8 Unmodified _FYLAEDFF_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|100|1|anti-sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|100|1|anti-sense MSMS UPN47_class_I_Rep_1 2 526.2412109375 2 526.242201 1050.46985 NaN NaN NaN NaN NaN NaN NaN 63.333 1 66.693 66.193 67.193 3.3595 0 0 0 0.40581 1 14979 14979 2.8892 0.31174 1 + 9756 27504 6014 6020 12113 12113 -0.05336726088012256 FYLEGGFSKF 10 Unmodified _FYLEGGFSKF_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS UPN48_class_I_Rep_2 6 598.2973022460938 2 597.795132 1193.57571 0.50178 0.00029996 -0.21919 -0.00013103 0.28259 0.00016893 597.794938206378 67.079 0.5417 70.575 70.276 70.818 3.4963 58 32 2 0 0 0 0.46742 2 15304 15304;15313 14.405 6.2499 1 172900 9757 3135 6015 6021 12114;12115 12114 -0.013333902425074484 FYLEGGFSKF 10 Unmodified _FYLEGGFSKF_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS UPN48_class_I_Rep_3 7 597.7952270507812 2 597.795132 1193.57571 0.57907 0.00034617 -0.31675 -0.00018935 0.26233 0.00015682 597.794696777217 67.019 0.5278 70.526 70.182 70.71 3.5077 45 33 2 0 0 0 0.41414 2 15265 15179;15265 18.373 8.99 1 123600 9758 3135 6015 6021 12116;12117 12117 -0.013333902425074484 FYLFECNRN 9 Unmodified _FYLFECNRN_ 0 0 0 REV__L1MD1_dup3260|chr8:60595335-60596119:+|4.497893291527708|0.1210017585318308|5.22|151.0|58|3|anti-sense REV__L1MD1_dup3260|chr8:60595335-60596119:+|4.497893291527708|0.1210017585318308|5.22|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_3 4 603.2733154296875 2 603.274041 1204.53353 NaN NaN NaN NaN NaN NaN NaN 34.076 1 37.351 36.851 37.851 3.2748 0 0 0 0.40038 1 6153 6153 0.6015 0 1 + 9759 27325 6016 6022 12118 12118 -0.06055688922560876 FYLFLYIT 8 Unmodified _FYLFLYIT_ 0 0 0 REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|138|2|anti-sense REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|138|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 539.7935791015625 2 540.294236 1078.57392 0.43311 0.00023401 -0.36093 -0.00019501 0.072178 3.8998E-05 540.2939085190307 72.767 0.082802 75.994 75.92 76.003 3.2271 10 6 2 0 0 0 0.72333 1 17935 17935 2.8892 0 1 48572 + 9760 28730 6017 6023 12119 12119 0.03777600739499576 FYLHDFQI 8 Unmodified _FYLHDFQI_ 0 0 0 REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|221|2|anti-sense REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|221|2|anti-sense MSMS UPN47_class_I_Rep_3 4 541.779541015625 2 541.768917 1081.52328 NaN NaN NaN NaN NaN NaN NaN 57.267 1 60.435 59.935 60.935 3.1681 0 0 0 0.388 1 13221 13221 12.532 0 1 + 9761 27256 6018 6024 12120 12120 -0.014219285855006092 FYLLCTLLA 9 Unmodified _FYLLCTLLA_ 0 0 0 REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|60|2|anti-sense REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|60|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.7935791015625 2 528.793546 1055.57254 -0.20856 -0.00011028 0.025304 1.338E-05 -0.18325 -9.6903E-05 528.7934684339307 30.977 0.56867 34.459 34.229 34.798 3.4821 75 47 2 0 0 0 0.46434 2 5234 5234;5262 4.3292 0.38484 1 89271 + 9762 27040 6019 6025 12121;12122 12121 0.046976433791314776 FYLLICHL 8 Unmodified _FYLLICHL_ 0 0 0 L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|92|2|anti-sense L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|92|2|anti-sense L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|92|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.28070068359375 2 511.280606 1020.54666 0.34831 0.00017808 -1.1373 -0.00058149 -0.78902 -0.00040341 511.2797675830645 27.837 0.12824 31.468 31.387 31.515 3.6311 13 11 2 0 0 0 0.82752 1 3754 3754 2.8892 0 1 42294 9763 12032 6020 6026 12123 12123 0.03720793927482191 FYLLICHSL 9 Unmodified _FYLLICHSL_ 0 0 0 REV__L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|227|2|anti-sense REV__L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.7988891601562 2 554.79662 1107.57869 NaN NaN NaN NaN NaN NaN NaN 65.872 1 69.324 68.824 69.824 3.4516 0 0 0 0.35339 1 15019 15019 7.9102 0 1 + 9764 24280 6021 6027 12124 12124 0.029201616106320216 FYLLYFDVCL 10 Unmodified _FYLLYFDVCL_ 0 0 0 L1ME3Cz_dup3350|chr4:129066251-129067131:+|1.375589972525538|0.3134686186139716|2.13|151.0|39|3|sense L1ME3Cz_dup3350|chr4:129066251-129067131:+|1.375589972525538|0.3134686186139716|2.13|151.0|39|3|sense L1ME3Cz_dup3350|chr4:129066251-129067131:+|1.375589972525538|0.3134686186139716|2.13|151.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 648.3198852539062 2 648.322668 1294.63078 NaN NaN NaN NaN NaN NaN NaN 54.209 1 57.779 57.279 58.279 3.5694 0 0 0 0.53105 1 11374 11374 1.8442 0.36234 1 9765 12771 6022 6028 12125 12125 -0.004747197662709368 FYLPYLEF 8 Unmodified _FYLPYLEF_ 0 0 0 L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|55|2|anti-sense L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|55|2|anti-sense L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_1 5 546.2445678710938 2 546.276044 1090.53753 NaN NaN NaN NaN NaN NaN NaN 47.422 1 50.943 50.443 51.443 3.5219 0 0 0 0.38221 1 9370 9370 14.582 1.0738 1 9766 13166 6023 6029 12126 12126 -0.004112761572059753 FYLSELNKV 9 Unmodified _FYLSELNKV_ 0 0 0 REV__LRRC8D|p.I775Kfs*3|1|0.13|ENSG00000171492|chr1:89935392-89935392|T/-|frameshift_variant REV__LRRC8D|p.I775Kfs*3|1|0.13|ENSG00000171492|chr1:89935392-89935392|T/-|frameshift_variant MSMS UPN48_class_I_Rep_3 7 556.8021850585938 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.069 1 64.582 64.082 65.082 3.5128 0 0 0 0.26661 1 13465 13465 12.532 0 1 + 9767 20409 6024 6030 12127 12127 0.04002896274505474 FYLVRFYI 8 Unmodified _FYLVRFYI_ 0 0 0 REV__L1MA4_dup8749|chr15:61903348-61905262:+|1.4754118527450446|0.028960180250344|5.67|150.0|139|3|anti-sense REV__L1MA4_dup8749|chr15:61903348-61905262:+|1.4754118527450446|0.028960180250344|5.67|150.0|139|3|anti-sense MSMS UPN47_class_I_Rep_2 3 560.7973022460938 2 560.813128 1119.6117 NaN NaN NaN NaN NaN NaN NaN 66.848 1 70.111 69.611 70.611 3.2636 0 0 0 0.4032 1 16085 16085 6.3541 0.59368 1 + 9768 25221 6025 6031 12128 12128 0.056681117249809176 FYLYIPDRH 9 Unmodified _FYLYIPDRH_ 0 0 0 REV__Tigger15a_dup3816|chr13:50094589-50094752:+|1.708582023703055|0.0128747899683387|7.05|151.0|1|1|sense REV__Tigger15a_dup3816|chr13:50094589-50094752:+|1.708582023703055|0.0128747899683387|7.05|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 612.3140869140625 2 612.314023 1222.61349 NaN NaN NaN NaN NaN NaN NaN 60.003 1 60.003 59.503 60.503 0 0 0 0 0.40038 1 13292 13292 0.6015 0 1 + 9769 32590 6026 6032 12129 12129 0.011091207429444694 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ FYM(1)DTSHLF FYM(120)DTSHLF 0 0 1 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS UPN48_class_I_Rep_1 5 588.7554321289062 2 588.755149 1175.49575 0.49782 0.00029309 0.014548 8.5652E-06 0.51237 0.00030166 588.7551563080323 56.696 0.73628 60.197 59.886 60.623 3.5014 147 61 3 0 0 0 0.0069816 1 12251 12251 120.45 82.299 1 666160 9770 2222 6027 6033 12130 12130 75 -0.08498199908035531 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ FYM(1)DTSHLF FYM(85)DTSHLF 0 0 1 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS UPN48_class_I_Rep_2 6 588.7553100585938 2 588.755149 1175.49575 0.59331 0.00034932 -0.095265 -5.6088E-05 0.49805 0.00029323 588.755112350443 56.624 0.73819 60.157 59.867 60.605 3.5333 170 69 3 0 0 0 0.0068038 2 12246 12205;12246 112.59 74.442 1 596780 9771 2222 6027 6033 12131;12132 12132 75 -0.08498199908035531 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ FYM(1)DTSHLF FYM(100)DTSHLF 0 0 1 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS UPN48_class_I_Rep_3 7 588.7554931640625 2 588.755149 1175.49575 0.41498 0.00024432 0.11182 6.5833E-05 0.5268 0.00031016 588.7551755092355 56.57 0.76364 60.113 59.814 60.578 3.5427 172 73 3 0 0 0 0.014412 3 12106 12106;12147;12185 100.37 70.147 1 710990 9772 2222 6027 6033 12133;12134;12135 12133 75 -0.08498199908035531 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ 0 0 1 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MATCH UPN47_class_I_Rep_2 3 2 588.755149 1175.49575 0.51882 0.00030546 1.1786 0.0006939 1.6974 0.00099935 589.2560574947028 57.128 0.034855 60.42 60.398 60.432 3.2912 0.18205 0.001341 NaN 120.45 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 39654 9773 2222 6027 6033 75 -0.08498199908035531 FYMFTIYF 8 Unmodified _FYMFTIYF_ 0 0 0 L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|168|3|anti-sense L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|168|3|anti-sense L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|168|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.2626342773438 2 566.264622 1130.51469 0.35132 0.00019894 -1.9331 -0.0010947 -1.5818 -0.00089572 566.2632510791135 57.832 0.41808 61 60.946 61.365 3.1681 39 28 2 0 0 0 0.82752 1 13431 13431 2.5775 0.27475 1 71935 9774 8497 6028 6034 12136 12136 -0.045346185463131405 FYMFTIYF 8 Unmodified _FYMFTIYF_ 0 0 0 L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|168|3|anti-sense L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|168|3|anti-sense L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|168|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 566.264622 1130.51469 0.37017 0.00020962 -1.2952 -0.00073342 -0.92501 -0.0005238 566.7653806395847 57.349 0.054459 60.786 60.758 60.812 3.437 -0.10734 0.00051531 NaN 2.5775 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 53527 9775 8497 6028 6034 -0.045346185463131405 FYMFVGHLY 9 Unmodified _FYMFVGHLY_ 0 0 0 L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|128|1|anti-sense;L1PB1_dup7983|chrX:81310769-81312857:-|1.3835011948509246|0.0086804911090664|7.32|149.0|105|2|anti-sense;L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|193|2|anti-sense L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|128|1|anti-sense L1PBa_dup1938|chr17:2626853-2630855:-|4.999120007845678|0.0469700095279504|6.73|151.0|128|1|anti-sense MSMS UPN47_class_I_Rep_3 4 588.7804565429688 2 588.78097 1175.54739 NaN NaN NaN NaN NaN NaN NaN 50.974 1 54.19 53.69 54.69 3.2163 0 0 0 0.39326 1 11305 11305 2.3027 0 1 9776 15151 6029 6035 12137 12137 -0.03336411423447316 FYMPYFLY 8 Unmodified _FYMPYFLY_ 0 0 0 L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|126|2|anti-sense L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|126|2|anti-sense L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|126|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 571.7760009765625 2 572.264622 1142.51469 0.4285 0.00024521 -0.53145 -0.00030413 -0.10295 -5.8915E-05 572.7660652926274 49.841 0.52328 53.184 52.884 53.408 3.3431 43 31 2 0 0 0 0.72333 1 10820 10820 2.8892 0 1 78859 9777 13947 6030 6036 12138 12138 -0.05086618546306454 FYNKCQEFV 9 Unmodified _FYNKCQEFV_ 0 0 0 REV__ENSG00000181240|ENST00000321510|SLC25A41 REV__ENSG00000181240|ENST00000321510|SLC25A41 MSMS UPN47_class_I_Rep_3 4 589.2734985351562 2 589.270967 1176.52738 NaN NaN NaN NaN NaN NaN NaN 73.124 1 76.351 75.851 76.851 3.2271 0 0 0 0.39428 1 18039 18039 2.0598 1.2661 1 + 9778 20727 6031 6037 12139 12139 -0.05382207154093521 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN48_class_I_Rep_1 5 587.8164672851562 2 587.816399 1173.61824 0.45735 0.00026884 -0.091084 -5.3541E-05 0.36626 0.00021529 587.8163211574117 69.272 0.10246 72.727 72.682 72.785 3.4548 9 6 2 0 0 0 0.2924 1 16063 16063 14.405 2.1647 1 127840 9779 2447;16677 6032 6038 12140 12140 0.038380048857106885 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN48_class_I_Rep_1 5 587.8159790039062 2 587.816399 1173.61824 0.45688 0.00026856 -0.063707 -3.7448E-05 0.39318 0.00023112 587.8163422597707 69.411 0.39163 72.866 72.785 73.176 3.4548 50 28 2 0 0 0 0.052941 2 16150 16111;16150 47.732 24.996 1 144530 9780 2447;16677 6032 6038 12141;12142 12142 0.038380048857106885 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN48_class_I_Rep_2 6 587.8170776367188 2 587.816399 1173.61824 0.48303 0.00028393 0.043947 2.5833E-05 0.52698 0.00030977 587.8162703612943 69.243 0.3189 72.765 72.51 72.829 3.5216 42 25 2 0 0 0 0.014369 1 16031 16031 67.081 27.131 1 152880 9781 2447;16677 6032 6038 12143 12143 0.038380048857106885 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN48_class_I_Rep_2 6 587.8170776367188 2 587.816399 1173.61824 0.48159 0.00028309 -0.072477 -4.2603E-05 0.40911 0.00024048 587.8163723506553 69.389 0.1855 72.911 72.816 73.001 3.5216 26 15 2 0 0 0 0.12306 1 16075 16075 29.437 17.197 1 120420 9782 2447;16677 6032 6038 12144 12144 0.038380048857106885 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MULTI-MSMS UPN48_class_I_Rep_3 7 587.8162231445312 2 587.816399 1173.61824 0.56651 0.00033301 0.095739 5.6277E-05 0.66225 0.00038928 587.8162319428128 69.206 0.54308 72.715 72.426 72.969 3.5093 47 40 2 0 0 0 0.043808 4 15977 15887;15939;15977;15989 51.488 28.752 1 163380 9783 2447;16677 6032 6038 12145;12146;12147;12148 12147 0.038380048857106885 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MSMS UPN48_class_I_Rep_3 7 587.8165893554688 2 587.816399 1173.61824 NaN NaN NaN NaN NaN NaN NaN 69.449 1 72.962 72.462 73.462 3.5128 0 0 0 0.19736 1 16000 16000 16.566 9.9355 1 9784 2447;16677 6032 6038 12149 12149 0.038380048857106885 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MSMS UPN48_class_I_Rep_3 7 587.8167724609375 2 587.816399 1173.61824 NaN NaN NaN NaN NaN NaN NaN 69.598 1 73.111 72.611 73.611 3.5128 0 0 0 0.36857 1 16045 16045 7.1017 3.5052 1 9785 2447;16677 6032 6038 12150 12150 0.038380048857106885 FYNLWKPF 8 Unmodified _FYNLWKPF_ 0 0 0 REV__L1MB7_dup4342|chr3:71560399-71561053:+|2.477004766853551|0.0150073723919631|7.37|151.0|38|2|anti-sense REV__L1MB7_dup4342|chr3:71560399-71561053:+|2.477004766853551|0.0150073723919631|7.37|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.313720703125 2 557.789653 1113.56475 NaN NaN NaN NaN NaN NaN NaN 61.631 1 65.099 64.599 65.599 3.4678 0 0 0 0.40604 1 13728 13728 2.5775 0 1 + 9786 26264 6033 6039 12151 12151 0.01251252173847206 FYNRINNY 8 Unmodified _FYNRINNY_ 0 0 0 HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|40|3|sense HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|40|3|sense HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.2667846679688 2 552.267073 1102.51959 0.47925 0.00026467 -0.88201 -0.0004871 -0.40276 -0.00022243 552.2664062938535 85.81 0.049973 89.181 89.155 89.205 3.3716 10 5 3 0 0 0 0.82752 1 21499 21499 0.69038 0 1 148270 9787 8447 6034 6040 12152 12152 -0.027565983593376586 FYNRWFVE 8 Unmodified _FYNRWFVE_ 0 0 0 REV__ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron REV__ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron MSMS UPN47_class_I_Rep_2 3 580.7806396484375 2 580.779816 1159.54508 NaN NaN NaN NaN NaN NaN NaN 32.908 1 36.362 35.862 36.862 3.4547 0 0 0 0.40746 1 5762 5762 0.69038 0 1 + 9788 20332 6035 6041 12153 12153 -0.02831123836926963 FYNYYYYV 8 Unmodified _FYNYYYYV_ 0 0 0 L1MB4_dup7917|chr18:2685436-2685947:-|1.2773653918245629|0.022707326748298|5.81|151.0|26|1|anti-sense L1MB4_dup7917|chr18:2685436-2685947:-|1.2773653918245629|0.022707326748298|5.81|151.0|26|1|anti-sense L1MB4_dup7917|chr18:2685436-2685947:-|1.2773653918245629|0.022707326748298|5.81|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 597.7604370117188 2 597.760758 1193.50696 NaN NaN NaN NaN NaN NaN NaN 68.448 1 71.956 71.456 72.456 3.5083 0 0 0 0.40738 1 15786 15786 0.79363 0.19213 1 9789 10586 6036 6042 12154 12154 -0.0820505454225895 FYPFRSRH 8 Unmodified _FYPFRSRH_ 0 0 0 L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|42|3|sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|42|3|sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|42|3|sense MSMS UPN47_class_I_Rep_2 3 555.2848510742188 2 555.2856 1108.55665 NaN NaN NaN NaN NaN NaN NaN 26.741 1 30.236 29.736 30.736 3.4948 0 0 0 0.40738 1 3912 3912 0.79363 0.10326 1 9790 8831 6037 6043 12155 12155 0.006711179770945819 FYPLGSPLFV 10 Unmodified _FYPLGSPLFV_ 0 0 0 REV__L1MEf_dup8476|chr12:57346479-57346963:+|1.1272054516243564|0.0048066554865464|7.87|151.0|25|1|anti-sense REV__L1MEf_dup8476|chr12:57346479-57346963:+|1.1272054516243564|0.0048066554865464|7.87|151.0|25|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.3118286132812 2 570.310418 1138.60628 0.52483 0.00029932 -0.46855 -0.00026722 0.056289 3.2102E-05 570.3104066301869 68.964 1.2694 72.473 71.939 73.208 3.5093 292 96 5 0 0 0 0.51003 1 15711 15711 10.824 0 1 1514500 + 9791 28697 6038 6044 12156 12156 0.042523881424813226 FYPLSMPVP 9 Unmodified _FYPLSMPVP_ 0 0 0 REV__THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|87|3|anti-sense REV__THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|87|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.7708129882812 2 525.770071 1049.52559 -0.31764 -0.00016701 -0.21022 -0.00011053 -0.52786 -0.00027753 525.7698310016782 27.348 0.54208 30.69 30.446 30.988 3.3422 84 46 2 0 0 0 0.48643 1 4119 4119 2.0598 0 1 72700 + 9792 32252 6039 6045 12157 12157 0.0028078382797502854 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS UPN48_class_I_Rep_1 5 570.310546875 2 570.310418 1138.60628 0.44779 0.00025538 -0.41708 -0.00023787 0.030712 1.7516E-05 570.3104308582092 69.217 1.1585 72.672 72.08 73.239 3.4548 286 86 5 0 0 0 0.090251 5 15989 15907;15949;15989;16028;16075 36.127 20.28 1 1661600 9793 2582 6040 6046 12158;12159;12160;12161;12162 12160 0.0425238814250406 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS UPN48_class_I_Rep_2 6 570.3107299804688 2 570.310418 1138.60628 0.48731 0.00027792 -0.37651 -0.00021473 0.11079 6.3187E-05 570.3104086327794 68.949 1.2251 72.471 71.992 73.217 3.5216 287 97 4 0 0 0 0.090251 5 15911 15831;15869;15911;15970;16071 36.127 20.28 1 1333200 9794 2582 6040 6046 12163;12164;12165;12166;12167 12165 0.0425238814250406 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS UPN48_class_I_Rep_3 7 570.3106689453125 2 570.310418 1138.60628 0.52483 0.00029932 -0.46855 -0.00026722 0.056289 3.2102E-05 570.3104066301869 68.964 1.2694 72.473 71.939 73.208 3.5093 292 96 5 0 0 0 0.090251 4 15796 15755;15796;15834;15947 36.127 20.28 1 1514500 9795 2582 6040 6046 12168;12169;12170;12171 12169 0.0425238814250406 FYPTSTELQ 9 Unmodified _FYPTSTELQ_ 0 0 0 REV__L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|48|1|sense REV__L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|48|1|sense MSMS UPN48_class_I_Rep_1 5 543.2619018554688 2 543.261122 1084.50769 NaN NaN NaN NaN NaN NaN NaN 76.763 1 80.273 79.773 80.773 3.5102 0 0 0 0.39518 1 18239 18239 1.8442 0.19162 1 + 9796 24777 6041 6047 12172 12172 -0.03118259893199138 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN48_class_I_Rep_1 5 568.2766723632812 2 568.276575 1134.5386 0.438 0.00024891 -0.085075 -4.8346E-05 0.35293 0.00020056 568.2764580854862 77.423 1.2127 80.945 80.448 81.66 3.5221 256 119 4 0 0 0 0.0054033 7 18415 18340;18373;18382;18415;18451;18466;18488 88.954 59.872 1 2101000 9797 1487 6042 6048 12173;12174;12175;12176;12177;12178;12179 12176 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN48_class_I_Rep_1 5 568.2766723632812 2 568.276575 1134.5386 0.43681 0.00024823 -0.12155 -6.9076E-05 0.31526 0.00017915 568.7779888807424 78.217 0.1767 81.739 81.629 81.806 3.5221 28 20 2 0 0 0 0.33654 1 18649 18649 11.64 4.9171 1 104500 9798 1487 6042 6048 12180 12180 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN48_class_I_Rep_1 5 568.2772216796875 2 568.276575 1134.5386 0.43694 0.0002483 0.11056 6.2826E-05 0.5475 0.00031113 568.276687031042 78.382 0.18373 81.904 81.767 81.95 3.5221 23 19 2 0 0 0 0.46434 1 18704 18704 4.3292 0.73274 1 61374 9799 1487 6042 6048 12181 12181 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN48_class_I_Rep_2 6 568.2767333984375 2 568.276575 1134.5386 0.4815 0.00027363 -0.21694 -0.00012328 0.26456 0.00015035 568.2763418123147 77.299 1.318 80.911 80.405 81.723 3.6116 380 130 4 0 0 0 0.0054033 6 18310 18246;18279;18310;18316;18357;18396 78.728 51.844 1 2368800 9800 1487 6042 6048 12182;12183;12184;12185;12186;12187 12184 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN48_class_I_Rep_3 7 568.2767333984375 2 568.276575 1134.5386 0.49606 0.0002819 -0.27951 -0.00015884 0.21655 0.00012306 568.2763464654485 77.298 1.2719 80.9 80.444 81.716 3.6016 333 120 4 0 0 0 0.0054033 4 18297 18248;18255;18297;18338 78.728 51.844 1 2255800 9801 1487 6042 6048 12188;12189;12190;12191 12190 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 568.276575 1134.5386 0.48191 0.00027386 0.18718 0.00010637 0.6691 0.00038023 568.7784056051129 78.208 0.12543 81.83 81.734 81.859 3.6222 -0.037606 0.00022551 NaN 4.3292 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 87103 9802 1487 6042 6048 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 568.276575 1134.5386 0.49357 0.00028049 -0.30981 -0.00017606 0.18376 0.00010443 568.2765382446867 78.408 0.088112 82.029 81.967 82.055 3.6215 0.14483 -0.00017585 NaN 11.64 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 62698 9803 1487 6042 6048 -0.02329061788304898 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 568.276575 1134.5386 0.49318 0.00028026 -0.32582 -0.00018515 0.16736 9.5108E-05 568.2764055602031 78.247 0.12231 81.868 81.845 81.967 3.6216 0.00077276 -0.00035754 NaN 4.3292 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 97499 9804 1487 6042 6048 -0.02329061788304898 FYQAKGITK 9 Unmodified _FYQAKGITK_ 0 0 0 REV__L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|98|1|anti-sense REV__L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|98|1|anti-sense MSMS UPN47_class_I_Rep_1 2 528.2990112304688 2 528.297842 1054.58113 NaN NaN NaN NaN NaN NaN NaN 34.294 1 37.98 37.48 38.48 3.6859 0 0 0 0.4007 1 6152 6152 0.52476 0.066424 1 + 9805 29845 6043 6049 12192 12192 0.056023333399252806 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN48_class_I_Rep_1 5 599.8175659179688 2 599.816399 1197.61824 NaN NaN NaN NaN NaN NaN NaN 53.67 1 57.184 56.684 57.684 3.5143 0 0 0 0.2088 1 11288 11288 15.847 4.2069 1 9806 3181 6044 6050 12193 12193 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN48_class_I_Rep_1 5 599.8170166015625 2 599.816399 1197.61824 NaN NaN NaN NaN NaN NaN NaN 53.841 1 57.355 56.855 57.855 3.5143 0 0 0 0.29868 1 11341 11341 10.824 3.5347 1 9807 3181 6044 6050 12194 12194 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS UPN48_class_I_Rep_2 6 599.8162231445312 2 599.816399 1197.61824 0.56297 0.00033768 -0.034681 -2.0802E-05 0.52829 0.00031688 599.8163115326968 53.745 0.37966 57.355 57.091 57.471 3.6098 47 28 2 0 0 0 0.20276 3 11249 11226;11249;11293 20.454 5.6154 1 120640 9808 3181 6044 6050 12195;12196;12197 12196 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN48_class_I_Rep_2 6 599.81640625 2 599.816399 1197.61824 NaN NaN NaN NaN NaN NaN NaN 53.975 1 57.557 57.057 58.057 3.5817 0 0 0 0.38639 1 11363 11363 3.9444 0.94915 1 9809 3181 6044 6050 12198 12198 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN48_class_I_Rep_3 7 599.8159790039062 2 599.816399 1197.61824 NaN NaN NaN NaN NaN NaN NaN 53.64 1 57.224 56.724 57.724 3.5836 0 0 0 0.28335 1 11199 11199 11.64 3.7301 1 9810 3181 6044 6050 12199 12199 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN48_class_I_Rep_3 7 599.8179321289062 2 599.816399 1197.61824 NaN NaN NaN NaN NaN NaN NaN 53.685 1 57.268 56.768 57.768 3.5836 0 0 0 0.28335 1 11212 11212 11.64 2.8949 1 9811 3181 6044 6050 12200 12200 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN48_class_I_Rep_3 7 599.8160400390625 2 599.816399 1197.61824 NaN NaN NaN NaN NaN NaN NaN 53.777 1 57.36 56.86 57.86 3.5836 0 0 0 0.059724 1 11241 11241 34.102 5.6156 1 9812 3181 6044 6050 12201 12201 0.027340048857013244 FYQRFPLSF 9 Unmodified _FYQRFPLSF_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN48_class_I_Rep_1 5 602.8116455078125 2 602.811116 1203.60768 0.46141 0.00027814 0.30989 0.00018681 0.7713 0.00046495 602.8111507371224 71.013 0.23058 74.479 74.391 74.622 3.466 36 26 2 0 0 0 0.31407 1 16570 16570 13.042 7.3106 1 147770 9813 2833 6045 6051 12202 12202 0.014020222312637998 FYQRFPLSF 9 Unmodified _FYQRFPLSF_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MSMS UPN48_class_I_Rep_1 5 602.8123779296875 2 602.811116 1203.60768 NaN NaN NaN NaN NaN NaN NaN 70.863 1 74.329 73.829 74.829 3.466 0 0 0 0.13613 1 16536 16536 20.415 8.1739 1 9814 2833 6045 6051 12203 12203 0.014020222312637998 FYQRFPLSF 9 Unmodified _FYQRFPLSF_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN48_class_I_Rep_2 6 602.8103637695312 2 602.811116 1203.60768 0.47849 0.00028844 0.080482 4.8516E-05 0.55897 0.00033695 602.8111244302471 70.759 0.34743 74.295 74.149 74.497 3.5359 51 40 2 0 0 0 0.14216 4 16468 16445;16468;16482;16519 26.268 12.362 1 97837 9815 2833 6045 6051 12204;12205;12206;12207 12205 0.014020222312637998 FYQRFPLSF 9 Unmodified _FYQRFPLSF_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN48_class_I_Rep_3 7 602.8119506835938 2 602.811116 1203.60768 0.59978 0.00036156 0.11036 6.6529E-05 0.71015 0.00042808 602.8110258868762 70.715 0.38766 74.233 74.044 74.432 3.5185 46 40 2 0 0 0 0.32682 3 16358 16337;16358;16394 12.241 3.4953 1 115890 9816 2833 6045 6051 12208;12209;12210 12209 0.014020222312637998 FYQTYKEL 8 Unmodified _FYQTYKEL_ 0 0 0 L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|64|3|sense;L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|151|3|sense L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|64|3|sense L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|64|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.2747802734375 2 546.274032 1090.53351 0.38977 0.00021292 0.53256 0.00029092 0.92233 0.00050384 546.2742002364341 47.103 0.49442 50.852 50.51 51.005 3.7494 49 38 2 0 0 0 0.82752 2 9267 9226;9267 20.454 2.3073 1 117300 9817 13749 6046 6052 12211;12212 12212 -0.008133656509016873 FYRDRSDR 8 Unmodified _FYRDRSDR_ 0 0 0 MER4D_dup655|chr8:141144552-141145534:+|5.397706919158068|0.3097085126971373|4.12|151.0|67|3|anti-sense MER4D_dup655|chr8:141144552-141145534:+|5.397706919158068|0.3097085126971373|4.12|151.0|67|3|anti-sense MER4D_dup655|chr8:141144552-141145534:+|5.397706919158068|0.3097085126971373|4.12|151.0|67|3|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7723388671875 2 557.773054 1113.53155 NaN NaN NaN NaN NaN NaN NaN 61.705 1 65.073 64.573 65.573 3.3681 0 0 0 0.40527 1 14486 14486 3.5965 0.31518 1 9818 16032 6047 6053 12213 12213 -0.020669816161444032 FYRKEKRP 8 Unmodified _FYRKEKRP_ 0 0 0 ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180 ENST00000375206.6_1_9:100053158-100139173:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 561.8530883789062 2 562.322183 1122.62981 0.44088 0.00024791 -1.7408 -0.00097889 -1.2999 -0.00073097 562.3203731355513 49.671 0.043293 53.366 53.337 53.381 3.6946 4 2 2 0 0 0 0.72333 1 10062 10062 2.3027 0.65011 1 34992 9819 6441 6048 6054 12214 12214 0.07340246699709496 FYRLFLFPG 9 Unmodified _FYRLFLFPG_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MSMS UPN48_class_I_Rep_2 6 580.3185424804688 2 580.318577 1158.6226 NaN NaN NaN NaN NaN NaN NaN 53.495 1 57.104 56.604 57.604 3.6098 0 0 0 0.39428 1 11217 11217 2.0598 0 1 9820 3046 6049 6055 12215 12215 0.04963514099290478 FYRLIHHE 8 Unmodified _FYRLIHHE_ 0 0 0 REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 MSMS UPN47_class_I_Rep_2 3 557.7930297851562 2 557.793258 1113.57196 NaN NaN NaN NaN NaN NaN NaN 66.767 1 70.026 69.526 70.526 3.2588 0 0 0 0.40625 1 16060 16060 2.3027 0 1 + 9821 32036 6050 6056 12216 12216 0.01971984774286284 FYRRRRRMFYQ 11 Unmodified _FYRRRRRMFYQ_ 0 0 0 REV__L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|72|3|anti-sense REV__L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|72|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.2998657226562 3 560.300165 1677.87867 -0.016649 -9.3284E-06 0.61455 0.00034433 0.5979 0.000335 560.3004486592077 40.306 0.37043 43.973 43.83 44.2 3.6668 41 26 2 0 0 0 0.68583 1 7954 7954 0 0 1 72876 + 9822 26888 6051 6057 12217 12217 0.06684266664751704 FYRRRRRMFYQ 11 Unmodified _FYRRRRRMFYQ_ 0 0 0 REV__L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|72|3|anti-sense REV__L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|72|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 560.249755859375 3 560.300165 1677.87867 0.045074 2.5255E-05 0.66599 0.00037316 0.71107 0.00039841 560.300555993671 40.783 0.33644 44.154 43.982 44.318 3.3712 36 26 2 0 0 0 22.551 1 8110 8110 0.08335 0.08335 1 76051 + 9823 26888 6051 6057 12218 12218 0.06684266664751704 FYRRRRRMFYQ 11 Unmodified _FYRRRRRMFYQ_ 0 0 0 REV__L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|72|3|anti-sense REV__L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|72|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 560.300165 1677.87867 0.0070861 3.9703E-06 0.8907 0.00049906 0.89779 0.00050303 560.6349280435652 41.047 0.37337 44.284 44.024 44.397 3.2372 0.14681 0.00031633 NaN 0 33 25 2 NaN NaN NaN NaN 0 NaN NaN 0 96998 + 9824 26888 6051 6057 0.06684266664751704 FYRWFCLYA 9 Unmodified _FYRWFCLYA_ 0 0 0 L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|151|1|anti-sense;L1PA4_dup2137|chr3:87092251-87098391:-|1.2084132415237645|0.2557438672631409|2.24|149.0|222|1|anti-sense L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|151|1|anti-sense L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|151|1|anti-sense MSMS UPN48_class_I_Rep_3 7 634.8018798828125 2 634.799694 1267.58484 NaN NaN NaN NaN NaN NaN NaN 28.91 1 32.652 32.152 33.152 3.7424 0 0 0 0.40038 1 3994 3994 0.6015 0 1 9825 14333 6052 6058 12219 12219 -0.03825320157829992 FYSCIYHWH 9 Unmodified _FYSCIYHWH_ 0 0 0 REV__Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|150|3|anti-sense REV__Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_3 7 628.2718505859375 2 628.271301 1254.52805 NaN NaN NaN NaN NaN NaN NaN 56.345 1 59.888 59.388 60.388 3.5427 0 0 0 0.39326 1 12027 12027 2.3027 0.24298 1 + 9826 32525 6053 6059 12220 12220 -0.08903367714378874 FYSCSLTLHS 10 Unmodified _FYSCSLTLHS_ 0 0 0 L1MEc_dup4414|chr4:139329182-139330124:-|2.06343640217814|0.0153206300165233|7.07|151.0|55|2|anti-sense L1MEc_dup4414|chr4:139329182-139330124:-|2.06343640217814|0.0153206300165233|7.07|151.0|55|2|anti-sense L1MEc_dup4414|chr4:139329182-139330124:-|2.06343640217814|0.0153206300165233|7.07|151.0|55|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.2684936523438 2 579.268424 1156.5223 0.52775 0.00030571 -1.4185 -0.0008217 -0.89077 -0.00051599 579.2675647684487 77.265 0.6122 80.866 80.602 81.215 3.6016 93 52 3 0 0 0 0.38932 1 18262 18262 20.454 3.3407 1 151590 9827 13109 6054 6060 12221 12221 -0.04970511016676937 FYSCWKLY 8 Unmodified _FYSCWKLY_ 0 0 0 REV__L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|3|1|sense REV__L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 555.26123046875 2 555.259871 1108.50519 NaN NaN NaN NaN NaN NaN NaN 15.376 1 18.873 18.373 19.373 3.4968 0 0 0 0.40746 1 800 800 0.69038 0.088878 1 + 9828 26148 6055 6061 12222 12222 -0.04472386831844233 FYSFWYFA 8 Unmodified _FYSFWYFA_ 0 0 0 L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|85|1|anti-sense L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|85|1|anti-sense L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|85|1|anti-sense MSMS UPN48_class_I_Rep_2 6 565.751220703125 2 565.752736 1129.49092 NaN NaN NaN NaN NaN NaN NaN 33.018 1 36.667 36.167 37.167 3.6497 0 0 0 0.40604 1 5167 5167 2.5775 0.27475 1 9829 10266 6056 6062 12223 12223 -0.06864715988467651 FYSGLVPSVL 10 Unmodified _FYSGLVPSVL_ 0 0 0 Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.3004760742188 2 541.30005 1080.58555 0.47369 0.00025641 0.10051 5.4405E-05 0.5742 0.00031081 541.2999959051077 66.289 0.79274 69.741 69.357 70.149 3.4516 115 53 3 0 0 0 0.35076 3 15106 15106;15146;15188 24.021 2.3217 1 344830 9830 33278 6057 6063 12224;12225;12226 12224 0.04847797762840855 FYSGLVPSVL 10 Unmodified _FYSGLVPSVL_ 0 0 0 Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.3004760742188 2 541.30005 1080.58555 0.50272 0.00027212 0.052544 2.8442E-05 0.55527 0.00030057 541.2999880590164 66.124 0.82155 69.611 69.214 70.036 3.4866 118 58 3 0 0 0 0.35076 2 15049 15049;15148 24.021 1.2843 1 554540 9831 33278 6057 6063 12227;12228 12227 0.04847797762840855 FYSGLVPSVL 10 Unmodified _FYSGLVPSVL_ 0 0 0 Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|59|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.3001098632812 2 541.30005 1080.58555 0.5728 0.00031006 -0.009432 -5.1055E-06 0.56337 0.00030495 541.3000201518765 66.007 0.81534 69.515 69.122 69.937 3.5077 141 57 3 0 0 0 0.35076 3 14960 14960;14999;15048 24.021 2.3217 1 464440 9832 33278 6057 6063 12229;12230;12231 12229 0.04847797762840855 FYSPFIAVF 9 Unmodified _FYSPFIAVF_ 0 0 0 L1M4a2_dup1935|chr19:37959621-37960265:-|1.0141979513287698|0.0044776367904696|7.82|150.0|42|3|anti-sense L1M4a2_dup1935|chr19:37959621-37960265:-|1.0141979513287698|0.0044776367904696|7.82|150.0|42|3|anti-sense L1M4a2_dup1935|chr19:37959621-37960265:-|1.0141979513287698|0.0044776367904696|7.82|150.0|42|3|anti-sense MSMS UPN48_class_I_Rep_2 6 545.781494140625 2 545.784036 1089.55352 NaN NaN NaN NaN NaN NaN NaN 54.372 1 57.954 57.454 58.454 3.5817 0 0 0 0.1724 1 11486 11486 18.135 0 1 9833 8975 6058 6064 12232 12232 0.012324300796990428 FYSTTVTLF 9 Unmodified _FYSTTVTLF_ 0 0 0 nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871|IGHM MSMS UPN48_class_I_Rep_2 6 539.7769165039062 2 539.776408 1077.53826 NaN NaN NaN NaN NaN NaN NaN 77.712 1 81.334 80.834 81.834 3.6222 0 0 0 0.089203 1 18408 18408 26.884 0.61551 1 9834 16820 6059 6065 12233 12233 0.0025951849186185427 FYSTTVTLF 9 Unmodified _FYSTTVTLF_ 0 0 0 nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871|IGHM MULTI-MSMS UPN48_class_I_Rep_3 7 539.7762451171875 2 539.776408 1077.53826 0.59365 0.00032044 -0.35685 -0.00019262 0.23679 0.00012781 539.7762261584274 77.705 0.53017 81.306 81.072 81.602 3.6016 97 53 2 0 0 0 0.074367 2 18370 18370;18412 39.957 11.47 1 158510 9835 16820 6059 6065 12234;12235 12234 0.0025951849186185427 FYSTTVTLF 9 Unmodified _FYSTTVTLF_ 0 0 0 nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871|IGHM MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 539.776408 1077.53826 0.40264 0.00021734 -0.19873 -0.00010727 0.20391 0.00011007 539.7763443741359 77.804 0.30452 81.326 81.192 81.496 3.5221 0.010008 0.00013137 NaN 39.957 39 32 2 NaN NaN NaN NaN 0 NaN NaN 0 99825 9836 16820 6059 6065 0.0025951849186185427 FYTFKQVDF 9 Unmodified _FYTFKQVDF_ 0 0 0 REV__L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|38|1|anti-sense REV__L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|38|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.7949829101562 2 597.795132 1193.57571 0.48514 0.00029001 -0.030137 -1.8015E-05 0.455 0.000272 597.7949435292016 67.119 0.67375 70.57 70.307 70.98 3.4516 68 44 2 0 0 0 0.43982 1 15381 15381 5.7319 0.83484 1 136740 + 9837 25977 6060 6066 12236 12236 -0.013333902425301858 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3 ENSG00000041880|ENST00000398755|PARP3 ENSG00000041880|ENST00000398755|PARP3 MULTI-MSMS UPN48_class_I_Rep_1 5 569.2894897460938 2 569.290017 1136.56548 0.53434 0.00030419 -0.31625 -0.00018004 0.21809 0.00012416 569.2896907934131 63.336 0.42817 66.794 66.53 66.958 3.4578 45 32 2 0 0 0 0.082592 2 14239 14205;14239 37.974 19.839 1 80961 9838 869 6061 6067 12237;12238 12238 0.0026604682288962067 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3 ENSG00000041880|ENST00000398755|PARP3 ENSG00000041880|ENST00000398755|PARP3 MULTI-MSMS UPN48_class_I_Rep_2 6 569.2907104492188 2 569.290017 1136.56548 0.53151 0.00030258 0.017214 9.7998E-06 0.54873 0.00031238 569.2897438444635 63.111 0.32339 66.584 66.399 66.722 3.4738 37 25 2 0 0 0 0.066633 2 14163 14163;14176 41.84 23.705 1 104040 9839 869 6061 6067 12239;12240 12239 0.0026604682288962067 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3 ENSG00000041880|ENST00000398755|PARP3 ENSG00000041880|ENST00000398755|PARP3 MSMS UPN48_class_I_Rep_3 7 569.2901611328125 2 569.290017 1136.56548 NaN NaN NaN NaN NaN NaN NaN 63.065 1 66.574 66.074 67.074 3.5091 0 0 0 0.066339 1 14069 14069 32.305 16.458 1 9840 869 6061 6067 12241 12241 0.0026604682288962067 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3 ENSG00000041880|ENST00000398755|PARP3 ENSG00000041880|ENST00000398755|PARP3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 569.290017 1136.56548 0.52998 0.00030171 0.442 0.00025162 0.97198 0.00055334 569.2902405231074 63.321 0.076321 66.795 66.748 66.825 3.4738 0.00038213 0.00064804 NaN 37.974 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 50773 9841 869 6061 6067 0.0026604682288962067 FYVDTVRAF 9 Unmodified _FYVDTVRAF_ 0 0 0 ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENSG00000177084|ENST00000320574|POLE ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENST00000537064.5_1_12:133235217-133253139:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 559.286865234375 2 559.287474 1116.5604 0.3913 0.00021885 -0.91371 -0.00051102 -0.5224 -0.00029217 559.2864638488802 59.779 0.05254 63.296 63.269 63.322 3.5169 7 3 3 0 0 0 0.23293 1 13080 13080 18.146 5.6148 1 42267 9842 4781 6062 6068 12242 12242 0.0067774296028346726 FYVDTVRAF 9 Unmodified _FYVDTVRAF_ 0 0 0 ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENSG00000177084|ENST00000320574|POLE ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENST00000537064.5_1_12:133235217-133253139:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 559.287474 1116.5604 0.61511 0.00034402 -0.38433 -0.00021495 0.23078 0.00012907 559.7886269772764 59.944 0.079517 63.424 63.388 63.468 3.4801 0.064027 0.00036214 NaN 18.146 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 49703 9843 4781 6062 6068 0.0067774296028346726 FYVFCCCCFC 10 Unmodified _FYVFCCCCFC_ 0 0 0 L1MB8_dup2555|chr3:14995217-14996276:-|1.0418250385423171|0.0465644816077395|4.48|151.0|73|3|anti-sense L1MB8_dup2555|chr3:14995217-14996276:-|1.0418250385423171|0.0465644816077395|4.48|151.0|73|3|anti-sense L1MB8_dup2555|chr3:14995217-14996276:-|1.0418250385423171|0.0465644816077395|4.48|151.0|73|3|anti-sense MSMS UPN47_class_I_Rep_2 3 619.2040405273438 2 619.204012 1236.39347 NaN NaN NaN NaN NaN NaN NaN 116.69 1 120.18 119.68 120.68 3.4891 0 0 0 0.53105 1 28497 28497 0 0 1 9844 10981 6063 6069 12243 12243 -0.21526971838807185 FYVPELNL 8 Unmodified _FYVPELNL_ 0 0 0 REV__ENST00000531830.1_1_11:125875536-125880518:-|nuORF REV__ENST00000531830.1_1_11:125875536-125880518:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.7660827636719 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 113.17 1 116.8 116.3 117.3 3.6314 0 0 0 0.40738 1 27485 27485 0.79363 0 1 + 9845 17739 6064 6070 12244 12244 0.02011553182978787 FYVRYHSPQ 9 Unmodified _FYVRYHSPQ_ 0 0 0 REV__L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|127|2|sense REV__L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|127|2|sense MSMS UPN48_class_I_Rep_3 7 598.8019409179688 2 598.795998 1195.57744 NaN NaN NaN NaN NaN NaN NaN 38.606 1 42.265 41.765 42.765 3.6595 0 0 0 0.37692 1 6655 6655 6.2058 0.42235 1 + 9846 29822 6065 6071 12245 12245 -0.012523364339131149 FYVWFFEEP 9 Unmodified _FYVWFFEEP_ 0 0 0 L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|53|1|anti-sense L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|53|1|anti-sense L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|53|1|anti-sense MSMS UPN46_class_I_Rep_3 1 632.2879028320312 2 632.289682 1262.56481 NaN NaN NaN NaN NaN NaN NaN 44.349 1 44.349 43.849 44.849 0 0 0 0 0.40038 1 8931 8931 0.6015 0.076735 1 9847 10342 6066 6072 12246 12246 -0.05596792616779567 FYWDFHINV 9 Unmodified _FYWDFHINV_ 0 0 0 L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|182|1|anti-sense L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|182|1|anti-sense L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|182|1|anti-sense MSMS UPN47_class_I_Rep_2 3 620.791015625 2 620.792924 1239.57129 NaN NaN NaN NaN NaN NaN NaN 76.622 1 79.953 79.453 80.453 3.3315 0 0 0 0.39428 1 18973 18973 2.0598 0.40713 1 9848 14833 6067 6073 12247 12247 -0.03890854665428378 FYWGLIQY 8 Unmodified _FYWGLIQY_ 0 0 0 REV__L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|48|2|anti-sense REV__L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_1 5 545.272705078125 2 545.273835 1088.53312 NaN NaN NaN NaN NaN NaN NaN 54.731 1 58.239 57.739 58.739 3.5082 0 0 0 0.39408 1 11616 11616 10.183 0.83596 1 + 9849 26832 6068 6074 12248 12248 -0.007607405800854394 FYWGLIQY 8 Unmodified _FYWGLIQY_ 0 0 0 REV__L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|48|2|anti-sense REV__L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|48|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 545.2739868164062 2 545.273835 1088.53312 0.3427 0.00018686 0.19049 0.00010387 0.53319 0.00029073 545.7754201098091 54.603 0.15591 58.172 58.07 58.226 3.5694 16 13 2 0 0 0 0.82752 1 11500 11500 9.3474 0 1 64735 + 9850 26832 6068 6074 12249 12249 -0.007607405800854394 FYWKVWRN 8 Unmodified _FYWKVWRN_ 0 0 0 REV__L1PA6_dup778|chr2:174359520-174360224:+|1.7366415768101469|0.0985937596064369|4.14|151.0|30|1|anti-sense REV__L1PA6_dup778|chr2:174359520-174360224:+|1.7366415768101469|0.0985937596064369|4.14|151.0|30|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 599.8115844726562 2 599.811451 1197.60835 0.55681 0.00033398 -0.89268 -0.00053544 -0.33587 -0.00020146 599.8109193045013 77.051 0.11649 77.051 77.008 77.125 0 13 9 2 0 0 0 0.72333 1 18009 18009 0.69038 0.088878 1 1167100 + 9851 29951 6069 6075 12250 12250 0.017448616709998532 FYWVIDWE 8 Unmodified _FYWVIDWE_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MSMS UPN48_class_I_Rep_1 5 579.2686157226562 2 579.26875 1156.52295 NaN NaN NaN NaN NaN NaN NaN 77.279 1 80.789 80.289 81.289 3.5102 0 0 0 0.32491 1 18385 18385 28.173 3.9633 1 9852 1475 6070 6076 12251 12251 -0.04905348305351254 FYWVVCRH 8 Unmodified _FYWVVCRH_ 0 0 0 L1ME3F_dup44|chr1:15965133-15966075:+|1.05418454633119|0.0875773420975675|3.59|151.0|53|2|anti-sense L1ME3F_dup44|chr1:15965133-15966075:+|1.05418454633119|0.0875773420975675|3.59|151.0|53|2|anti-sense L1ME3F_dup44|chr1:15965133-15966075:+|1.05418454633119|0.0875773420975675|3.59|151.0|53|2|anti-sense MSMS UPN46_class_I_Rep_3 1 555.2706298828125 2 555.271104 1108.52766 NaN NaN NaN NaN NaN NaN NaN 16.735 1 16.735 16.235 17.235 0 0 0 0 0.40746 1 1204 1204 0.69038 0 1 9853 12821 6071 6077 12252 12252 -0.02226742643574653 FYWYEEEESF 10 Unmodified _FYWYEEEESF_ 0 0 0 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 MSMS UPN46_class_I_Rep_3 1 477.1537170410156 3 476.859198 1427.55576 NaN NaN NaN NaN NaN NaN NaN 99.476 1 99.476 98.976 99.976 0 0 0 0 0.53105 1 24234 24234 0.15932 0 1 9854 1134 6072 6078 12253 12253 -0.1409123076382457 FYYADEFCF 9 Unmodified _FYYADEFCF_ 0 0 0 L1MB7_dup17105|chr13:112537074-112537904:-|3.12671093520858|0.0717687590555459|5.45|151.0|39|1|anti-sense L1MB7_dup17105|chr13:112537074-112537904:-|3.12671093520858|0.0717687590555459|5.45|151.0|39|1|anti-sense L1MB7_dup17105|chr13:112537074-112537904:-|3.12671093520858|0.0717687590555459|5.45|151.0|39|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 602.7365112304688 2 602.736425 1203.4583 0.48362 0.0002915 -1.1568 -0.00069726 -0.67321 -0.00040577 602.7356314095157 30.915 0.57225 34.457 34.186 34.758 3.542 86 57 2 0 0 0 0.48414 1 4483 4483 2.3027 0.9732 1 168640 9855 10740 6073 6079 12254 12254 -0.135292911736542 FYYCLWYI 8 Unmodified _FYYCLWYI_ 0 0 0 REV__HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|48|2|anti-sense REV__HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|48|2|anti-sense MSMS UPN46_class_I_Rep_3 1 585.7009887695312 2 585.770071 1169.52559 NaN NaN NaN NaN NaN NaN NaN 117.39 1 117.39 116.89 117.89 0 0 0 0 0.40738 1 29096 29096 0.79363 0 1 + 9856 23457 6074 6080 12255 12255 -0.052392161720263175 FYYICHLE 8 Unmodified _FYYICHLE_ 0 0 0 REV__L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|124|1|anti-sense REV__L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|124|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.2510375976562 2 544.249503 1086.48445 0.40095 0.00021822 1.8753 0.0010206 2.2762 0.0012388 544.7519035006408 49.974 0.17531 53.317 53.232 53.408 3.3431 12 8 2 0 0 0 0.82752 1 10951 10951 2.8892 0.31174 1 53801 + 9857 24169 6075 6081 12256 12256 -0.055329772115328524 FYYICHLE 8 Unmodified _FYYICHLE_ 0 0 0 REV__L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|124|1|anti-sense REV__L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|124|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.250732421875 2 544.249503 1086.48445 0.40711 0.00022157 0.85103 0.00046317 1.2581 0.00068475 544.2500528918001 50.14 0.16971 53.483 53.372 53.542 3.3431 12 8 2 0 0 0 0.82752 1 11000 11000 6.3541 1.5981 1 44672 + 9858 24169 6075 6081 12257 12257 -0.055329772115328524 FYYICHLE 8 Unmodified _FYYICHLE_ 0 0 0 REV__L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|124|1|anti-sense REV__L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|124|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 543.7321166992188 2 544.249503 1086.48445 0.40711 0.00022157 0.85103 0.00046317 1.2581 0.00068475 544.2500528918001 50.14 0.16971 53.483 53.372 53.542 3.3431 12 8 2 0 0 0 0.72333 1 11007 11007 6.3541 0 1 44672 + 9859 24169 6075 6081 12258 12258 -0.055329772115328524 FYYLPYRW 8 Unmodified _FYYLPYRW_ 0 0 0 REV__L1PA7_dup4895|chr5:177661089-177664032:+|2.420336929456497|0.1200775470443225|4.33|151.0|125|1|anti-sense REV__L1PA7_dup4895|chr5:177661089-177664032:+|2.420336929456497|0.1200775470443225|4.33|151.0|125|1|anti-sense MSMS UPN47_class_I_Rep_1 2 604.7759399414062 2 604.300384 1206.58622 NaN NaN NaN NaN NaN NaN NaN 32.25 1 35.963 35.463 36.463 3.7131 0 0 0 0.40738 1 5525 5525 0.79363 0.19213 1 + 9860 30110 6076 6082 12259 12259 -0.00881362797440488 FYYMDYLM 8 Unmodified _FYYMDYLM_ 0 0 0 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 MSMS UPN46_class_I_Rep_3 1 573.2406616210938 2 573.237747 1144.46094 NaN NaN NaN NaN NaN NaN NaN 28.051 1 28.051 27.551 28.551 0 0 0 0 0.40604 1 4252 4252 2.5775 0.27475 1 9861 2459 6077 6083 12260 12260 -0.10551159040346647 FYYSFFFT 8 Unmodified _FYYSFFFT_ 0 0 0 HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|12|1|sense HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|12|1|sense HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 561.2532958984375 2 561.252569 1120.49058 NaN NaN NaN NaN NaN NaN NaN 31.017 1 34.552 34.052 35.052 3.5342 0 0 0 0.40604 1 4534 4534 2.5775 0.51773 1 9862 8233 6078 6084 12261 12261 -0.06484135708319627 FYYVRMLN 8 Unmodified _FYYVRMLN_ 0 0 0 L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|119|1|anti-sense L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|119|1|anti-sense L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|119|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2798461914062 2 553.278595 1104.54264 NaN NaN NaN NaN NaN NaN NaN 71.462 1 74.752 74.252 75.252 3.2899 0 0 0 0.40625 1 17466 17466 2.3027 0.24298 1 9863 9765 6079 6085 12262 12262 -0.005452955662121894 FYYYYYSLG 9 Unmodified _FYYYYYSLG_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|348|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|348|3|anti-sense MSMS UPN48_class_I_Rep_2 6 619.7716064453125 2 619.773865 1237.53318 NaN NaN NaN NaN NaN NaN NaN 113.39 1 117.06 116.56 117.56 3.663 0 0 0 0.39428 1 27061 27061 2.0598 0.40713 1 + 9864 30692 6080 6086 12263 12263 -0.07608785370780424 GAALETLKFTS 11 Unmodified _GAALETLKFTS_ 0 0 0 ENST00000602414.5_1_4:119199974-119200130:+|nuORF ENST00000602414.5_1_4:119199974-119200130:+|nuORF ENST00000602414.5_1_4:119199974-119200130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.3117065429688 2 569.311146 1136.60774 0.046097 2.6243E-05 0.58261 0.00033168 0.6287 0.00035793 569.3114146754417 32.431 0.68819 35.886 35.626 36.314 3.4547 110 49 3 0 0 0 0.37961 1 5636 5636 10.8 1.4164 1 184290 9865 7665 6081 6087 12264 12264 0.04489977440630355 GAAPAPRTAR 10 Unmodified _GAAPAPRTAR_ 0 0 0 ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 MSMS UPN48_class_I_Rep_2 6 484.2757568359375 2 484.275232 966.535912 NaN NaN NaN NaN NaN NaN NaN 92.678 1 96.441 95.941 96.941 3.7629 0 0 0 0.53105 1 22050 22050 1.4819 0 1 9866 2026 6082 6088 12265 12265 0.051305275974073083 GAAPAPRTAR 10 Unmodified _GAAPAPRTAR_ 0 0 0 ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 MSMS UPN48_class_I_Rep_3 7 484.2752380371094 2 484.275232 966.535912 NaN NaN NaN NaN NaN NaN NaN 92.44 1 96.318 95.818 96.818 3.8782 0 0 0 0.53105 1 21915 21915 1.4819 0 1 9867 2026 6082 6088 12266 12266 0.051305275974073083 GAAQPMAPPPD 11 Unmodified _GAAQPMAPPPD_ 0 0 0 REV__ENSG00000122912|ENST00000609923|SLC25A16 REV__ENSG00000122912|ENST00000609923|SLC25A16 MULTI-MSMS UPN47_class_I_Rep_2 3 526.7481689453125 2 526.247492 1050.48043 -0.27608 -0.00014529 -1.1733 -0.00061743 -1.4493 -0.00076271 526.748234925371 35.214 0.080669 38.639 38.58 38.661 3.4253 6 4 2 0 0 0 0.67264 1 6470 6470 1.1933 0.39971 1 30080 + 9868 18766 6083 6089 12267 12267 -0.04279066705225887 GADDTVYMEY 10 Unmodified _GADDTVYMEY_ 0 0 0 ENST00000491292.5_1_2:128015174-128017132:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENST00000491292.5_1_2:128015174-128017132:-|nuORF ENST00000491292.5_1_2:128015174-128017132:-|nuORF MSMS UPN47_class_I_Rep_2 3 582.2327270507812 2 582.231704 1162.44886 NaN NaN NaN NaN NaN NaN NaN 63.56 1 66.816 66.316 67.316 3.2558 0 0 0 0.53105 1 15088 15088 3.9444 1.3669 1 9869 3988 6084 6090 12268 12268 -0.12587104249837466 GADNSVVRF 9 Unmodified _GADNSVVRF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_1 2 482.7459716796875 2 482.745973 963.477394 -0.2825 -0.00013638 -0.0096664 -4.6664E-06 -0.29217 -0.00014104 482.7459506514582 38.825 0.58536 42.49 42.25 42.835 3.6652 62 37 2 0 0 0 0.11683 2 7535 7493;7535 30.637 5.8822 1 94006 9870 5336 6085 6091 12269;12270 12270 -0.005805737677064826 GADNSVVRF 9 Unmodified _GADNSVVRF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_2 3 482.746337890625 2 482.745973 963.477394 -0.1956 -9.4424E-05 -0.043852 -2.1169E-05 -0.23945 -0.00011559 482.7459174529814 39.14 0.62275 42.519 42.283 42.906 3.3785 52 33 2 0 0 0 0.097406 2 7624 7624;7661 34.402 5.734 1 82092 9871 5336 6085 6091 12271;12272 12271 -0.005805737677064826 GADNSVVRF 9 Unmodified _GADNSVVRF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_3 4 482.74603271484375 2 482.745973 963.477394 -0.3758 -0.00018142 0.1957 9.4473E-05 -0.1801 -8.6943E-05 482.7461004618638 39.294 0.60548 42.532 42.219 42.824 3.238 65 42 2 0 0 0 0.11355 2 7765 7721;7765 31.268 9.5217 1 84363 9872 5336 6085 6091 12273;12274 12274 -0.005805737677064826 GADQTTLLY 9 Unmodified _GADQTTLLY_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS UPN47_class_I_Rep_1 2 491.2482604980469 2 491.248015 980.481476 0.076335 3.7499E-05 -0.013991 -6.8729E-06 0.062344 3.0627E-05 491.24795342572963 53.155 0.5124 56.682 56.384 56.896 3.5278 55 32 2 0 0 0 0.088679 2 11895 11855;11895 36.506 0.759 1 90728 9873 1145 6086 6092 12275;12276 12276 -0.009545290646542526 GADQTTLLY 9 Unmodified _GADQTTLLY_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS UPN47_class_I_Rep_2 3 491.2476501464844 2 491.248015 980.481476 0.36946 0.00018149 -0.56677 -0.00027843 -0.19732 -9.6931E-05 491.2475843642721 53.352 0.58035 56.679 56.48 57.061 3.3266 56 37 2 0 0 0 0.048662 2 11978 11938;11978 49.554 11.379 1 127310 9874 1145 6086 6092 12277;12278 12278 -0.009545290646542526 GADQTTLLY 9 Unmodified _GADQTTLLY_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS UPN47_class_I_Rep_3 4 491.24774169921875 2 491.248015 980.481476 0.2422 0.00011898 -0.2886 -0.00014178 -0.046404 -2.2796E-05 491.2478008747748 53.526 0.64465 56.721 56.383 57.028 3.1948 55 37 2 0 0 0 0.088679 2 12062 12021;12062 36.506 5.8697 1 84414 9875 1145 6086 6092 12279;12280 12280 -0.009545290646542526 GAEEVVYPH 9 Unmodified _GAEEVVYPH_ 0 0 0 REV__MLT1A0_dup16614|chr13:113227186-113227536:-|1.3865848408660189|0.2233177414992567|2.63|151.0|14|1|anti-sense REV__MLT1A0_dup16614|chr13:113227186-113227536:-|1.3865848408660189|0.2233177414992567|2.63|151.0|14|1|anti-sense MSMS UPN48_class_I_Rep_3 7 500.76580810546875 2 500.740357 999.46616 NaN NaN NaN NaN NaN NaN NaN 20.351 1 24.017 23.517 24.517 3.6667 0 0 0 0.38478 1 1713 1713 4.3292 0.38484 1 + 9876 31591 6087 6093 12281 12281 -0.03359395861855319 GAEPQYTGRPC 11 Unmodified _GAEPQYTGRPC_ 0 0 0 REV__ENSG00000146197|ENST00000274938|SCUBE3 REV__ENSG00000146197|ENST00000274938|SCUBE3 MSMS UPN46_class_I_Rep_3 1 589.764404296875 2 589.76658 1177.51861 NaN NaN NaN NaN NaN NaN NaN 16.677 1 16.677 16.177 17.177 0 0 0 0 0.38417 1 1187 1187 1.0715 0.10919 1 + 9877 19533 6088 6094 12282 12282 -0.06305180790536724 GAERPRVAPPI 11 Unmodified _GAERPRVAPPI_ 0 0 0 REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF MSMS UPN46_class_I_Rep_3 1 581.8397216796875 2 581.838197 1161.66184 NaN NaN NaN NaN NaN NaN NaN 108.84 1 108.84 108.34 109.34 0 0 0 0 0.37149 1 26653 26653 7.609 0.88579 1 + 9878 22144 6089 6095 12283 12283 0.08747614382855318 GAEVKKTGSSV 11 Unmodified _GAEVKKTGSSV_ 0 0 0 nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 MULTI-SECPEP UPN47_class_I_Rep_2 3 531.7515258789062 2 531.793121 1061.57169 -0.11934 -6.3464E-05 0.4686 0.0002492 0.34926 0.00018574 531.7931360176308 13.16 0.093445 16.548 16.482 16.575 3.388 9 6 2 0 0 0 22.551 1 244 244 8.7454 5.1489 1 23007 9879 16821 6090 6096 12284 12284 0.04336520263791499 GAEVKKTGSSV 11 Unmodified _GAEVKKTGSSV_ 0 0 0 nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 nc|ENSG00000211961|A0A0A0MS14|IGHV1-45 MULTI-SECPEP UPN47_class_I_Rep_3 4 531.75146484375 2 531.793121 1061.57169 -0.49092 -0.00026107 1.1084 0.00058944 0.61748 0.00032837 531.7935274569104 13.179 0.086943 16.552 16.488 16.575 3.3734 10 7 2 0 0 0 22.551 1 253 253 8.7454 2.0222 1 24959 9880 16821 6090 6096 12285 12285 0.04336520263791499 GAFSDGLAHL 10 Unmodified _GAFSDGLAHL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 494.75079345703125 2 494.248349 986.482145 0.22882 0.0001131 -0.25229 -0.0001247 -0.02347 -1.16E-05 494.2481967933208 55.369 0.54119 58.877 58.62 59.161 3.5082 43 35 2 0 0 0 0.36464 4 11845 11764;11810;11845;11855 22.736 11.242 1 94044 + 9881 5729 6091 6097 12286;12287;12288;12289 12288 -0.01163689624968356 GAFSDGLAHL 10 Unmodified _GAFSDGLAHL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_2 6 494.2486877441406 2 494.248349 986.482145 0.39931 0.00019736 -0.15465 -7.6433E-05 0.24467 0.00012093 494.24839462263236 55.298 0.33269 58.854 58.657 58.989 3.5559 32 18 2 0 0 0 0.21236 2 11751 11751;11798 49.933 23.665 1 78585 + 9882 5729 6091 6097 12290;12291 12290 -0.01163689624968356 GAFSDGLAHL 10 Unmodified _GAFSDGLAHL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 494.248291015625 2 494.248349 986.482145 0.1264 6.2474E-05 0.010322 5.1015E-06 0.13672 6.7575E-05 494.2483562689307 55.283 0.37646 58.838 58.653 59.029 3.5554 28 19 2 0 0 0 0.29514 2 11687 11687;11728 34.402 18.253 1 104930 + 9883 5729 6091 6097 12292;12293 12292 -0.01163689624968356 GAFSDGLAHL 10 Unmodified _GAFSDGLAHL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MATCH UPN48_class_I_Rep_2 6 2 494.248349 986.482145 0.39754 0.00019648 -0.72514 -0.0003584 -0.3276 -0.00016192 494.2482106831398 55.492 0.13659 59.048 58.989 59.126 3.5559 0.08568 -0.00040031 NaN 22.736 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 45927 + 9884 5729 6091 6097 -0.01163689624968356 GAGHPPLLR 9 Unmodified _GAGHPPLLR_ 0 0 0 L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|120|3|sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|120|3|sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|120|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 459.2796936035156 2 459.269419 916.524284 -0.11201 -5.1443E-05 0.020581 9.4522E-06 -0.09143 -4.1991E-05 459.2694256763618 68.01 0.63323 71.279 71.068 71.701 3.2696 107 52 3 0 0 0 0.12182 1 16374 16374 5.2307 0 1 164240 9885 14862 6092 6098 12294 12294 0.06268330574096126 GAGHPPLLR 9 Unmodified _GAGHPPLLR_ 0 0 0 L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|120|3|sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|120|3|sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|120|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 459.269419 916.524284 -0.1438 -6.6043E-05 -0.15392 -7.0693E-05 -0.29772 -0.00013674 459.26936823078853 68.148 0.5897 71.346 71.099 71.689 3.1977 0.033481 -9.4008E-05 NaN 5.2307 76 40 3 NaN NaN NaN NaN 0 NaN NaN 0 196160 9886 14862 6092 6098 0.06268330574096126 GAGSLLSLFVG 11 Unmodified _GAGSLLSLFVG_ 0 0 0 ENST00000252699.6_1_19:39220158-39220314:+|nuORF ENST00000252699.6_1_19:39220158-39220314:+|nuORF ENST00000252699.6_1_19:39220158-39220314:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 510.7904968261719 2 510.78985 1019.56515 0.2057 0.00010507 -0.24618 -0.00012575 -0.040486 -2.068E-05 510.78972713400367 56.721 0.73896 60.022 59.6 60.339 3.3009 88 55 2 0 0 0 0.4608 1 13044 13044 8.7454 0.58988 1 232510 9887 5919 6093 6099 12295 12295 0.05614627103057046 GAHRNWYL 8 Unmodified _GAHRNWYL_ 0 0 0 REV__ENST00000564912.5_1_16:57684199-57687923:+|nuORF REV__ENST00000564912.5_1_16:57684199-57687923:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 508.2113952636719 2 508.756675 1015.4988 0.28574 0.00014537 -1.2083 -0.00061475 -0.92259 -0.00046938 508.7559361473858 31.692 0.2404 35.227 35.039 35.279 3.5342 32 24 2 0 0 0 0.72333 1 4671 4671 0.69038 0 1 70153 + 9888 21218 6094 6100 12296 12296 -0.008331439483413305 GAIELEKPHWP 11 Unmodified _GAIELEKPHWP_ 0 0 0 REV__AluJr_dup13122|chr3:9458334-9458626:+|1.2032858849632222|0.2310008843851821|2.38|151.0|14|1|anti-sense REV__AluJr_dup13122|chr3:9458334-9458626:+|1.2032858849632222|0.2310008843851821|2.38|151.0|14|1|anti-sense MSMS UPN46_class_I_Rep_3 1 638.840087890625 2 638.837862 1275.66117 NaN NaN NaN NaN NaN NaN NaN 72.334 1 72.334 71.834 72.834 0 0 0 0 0.38417 1 16715 16715 1.1933 0 1 + 9889 17027 6095 6101 12297 12297 0.034367749431112316 GAKGIAWELS 10 Unmodified _GAKGIAWELS_ 0 0 0 THE1D-int_dup2232|chr16:3083217-3084323:-|1.10767343688331|0.3757932810614989|1.56|148.0|11|2|sense THE1D-int_dup2232|chr16:3083217-3084323:-|1.10767343688331|0.3757932810614989|1.56|148.0|11|2|sense THE1D-int_dup2232|chr16:3083217-3084323:-|1.10767343688331|0.3757932810614989|1.56|148.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 516.27685546875 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 72.675 1 72.675 72.175 73.175 0 0 0 0 0.53105 1 16809 16809 3.2813 0.39209 1 9890 32959 6096 6102 12298 12298 0.030694564432451443 GAKLHGVK 8 Unmodified _GAKLHGVK_ 0 0 0 REV__LTR39_dup338|chr5:150706748-150707474:-|4.040823467097411|0.3443449656804119|3.55|151.0|47|3|anti-sense REV__LTR39_dup338|chr5:150706748-150707474:-|4.040823467097411|0.3443449656804119|3.55|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_2 3 405.2542419433594 2 405.253237 808.491922 NaN NaN NaN NaN NaN NaN NaN 26.382 1 29.876 29.376 30.376 3.4945 0 0 0 0.40746 1 3808 3808 0.69038 0 1 + 9891 30911 6097 6103 12299 12299 0.08001543171099001 GALDRFAQ 8 Unmodified _GALDRFAQ_ 0 0 0 ENST00000478361.6_1_10:94240585-94297282:-|nuORF;ENSG00000119912|ENST00000265986|IDE ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENST00000478361.6_1_10:94240585-94297282:-|nuORF MSMS UPN48_class_I_Rep_1 5 439.2355651855469 2 439.229959 876.445365 NaN NaN NaN NaN NaN NaN NaN 96.366 1 99.978 99.478 100.48 3.6124 0 0 0 0.40643 1 23213 23213 2.0598 0 1 9892 2303 6098 6104 12300 12300 0.0022005854914368683 GAPLPKPPG 9 Unmodified _GAPLPKPPG_ 0 0 0 REV__nc|ENSG00000076716|O75487-2|GPC4 REV__nc|ENSG00000076716|O75487-2|GPC4 MULTI-SECPEP UPN48_class_I_Rep_3 7 416.75634765625 2 417.247621 832.480688 0.10002 4.1731E-05 3.6787 0.0015349 3.7787 0.0015767 417.2491159275696 108.97 0.03051 112.64 112.62 112.65 3.6751 4 2 2 0 0 0 0.11425 1 25852 25852 7.9102 0 1 623940 + 9893 17870 6099 6105 12301 12301 0.05774721076943479 GAPRFVKEVL 10 Unmodified _GAPRFVKEVL_ 0 0 0 L1PA2_dup187|chr1:158952741-158958797:+|2.9481994155969926|0.0787318393075506|5.23|151.0|11|1|sense L1PA2_dup187|chr1:158952741-158958797:+|2.9481994155969926|0.0787318393075506|5.23|151.0|11|1|sense L1PA2_dup187|chr1:158952741-158958797:+|2.9481994155969926|0.0787318393075506|5.23|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 558.3309326171875 2 558.332216 1114.64988 NaN NaN NaN NaN NaN NaN NaN 48.869 1 48.869 48.369 49.369 0 0 0 0 0.53105 1 10217 10217 1.6526 0 1 9894 14186 6100 6106 12302 12302 0.0971399763966474 GAQLRARRRDR 11 Unmodified _GAQLRARRRDR_ 0 0 0 ENST00000592416.1_1_18:48722932-48722989:-|nuORF ENST00000592416.1_1_18:48722932-48722989:-|nuORF ENST00000592416.1_1_18:48722932-48722989:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 451.93231201171875 3 452.267742 1353.7814 0.015038 6.8013E-06 -0.76625 -0.00034655 -0.75121 -0.00033975 452.26734613212886 90.097 0.034637 93.554 93.54 93.575 3.4571 6 4 2 0 0 0 22.551 1 22368 22368 0.50596 0.051438 1 33477 9895 7630 6101 6107 12303 12303 0.11865620780099562 GAQLRARRRDR 11 Unmodified _GAQLRARRRDR_ 0 0 0 ENST00000592416.1_1_18:48722932-48722989:-|nuORF ENST00000592416.1_1_18:48722932-48722989:-|nuORF ENST00000592416.1_1_18:48722932-48722989:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 452.267742 1353.7814 0.018629 8.4251E-06 -2.0856 -0.00094324 -2.0669 -0.00093481 452.2669645219379 89.731 0.15644 93.356 93.225 93.382 3.6255 -0.098786 -0.00068648 NaN 0.50596 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 96803 9896 7630 6101 6107 0.11865620780099562 GAQSFSFFPPP 11 Unmodified _GAQSFSFFPPP_ 0 0 0 REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|34|1|anti-sense REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 591.28515625 2 591.284931 1180.55531 0.40019 0.00023663 0.21866 0.00012929 0.61885 0.00036592 591.2849412322535 61.857 1.0124 65.225 64.91 65.923 3.3681 171 70 4 0 0 0 0.33678 1 14534 14534 12.241 1.4167 1 586390 + 9897 24399 6102 6108 12304 12304 -0.027745609023213547 GAQSFSFFPPP 11 Unmodified _GAQSFSFFPPP_ 0 0 0 REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|34|1|anti-sense REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 591.2849731445312 2 591.284931 1180.55531 0.4457 0.00026353 0.060541 3.5797E-05 0.50624 0.00029933 591.2848695319788 62.068 1.0545 65.328 65.036 66.09 3.2594 166 70 3 0 0 0 0.48412 1 14751 14751 8.1555 0.8663 1 627160 + 9898 24399 6102 6108 12305 12305 -0.027745609023213547 GAQSFSFFPPP 11 Unmodified _GAQSFSFFPPP_ 0 0 0 REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|34|1|anti-sense REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 591.2852172851562 2 591.284931 1180.55531 0.40385 0.00023879 0.036769 2.1741E-05 0.44062 0.00026053 591.2848666136933 62.228 0.86323 65.395 65.038 65.901 3.1667 151 56 3 0 0 0 0.28469 1 14717 14717 17.113 1.2657 1 565130 + 9899 24399 6102 6108 12306 12306 -0.027745609023213547 GAQWDGAQKR 10 Unmodified _GAQWDGAQKR_ 0 0 0 REV__ENST00000492278.5_1_9:140356016-140356520:-|nuORF REV__ENST00000492278.5_1_9:140356016-140356520:-|nuORF MSMS UPN48_class_I_Rep_1 5 558.7828369140625 2 558.780879 1115.5472 NaN NaN NaN NaN NaN NaN NaN 27.907 1 31.464 30.964 31.964 3.5571 0 0 0 0.53105 1 3660 3660 1.4819 0.68827 1 + 9900 22637 6103 6109 12307 12307 -0.005946950991074118 GARIHGLVF 9 Unmodified _GARIHGLVF_ 0 0 0 ENST00000566665.1_1_16:10273773-10274277:-|nuORF;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A ENST00000566665.1_1_16:10273773-10274277:-|nuORF ENST00000566665.1_1_16:10273773-10274277:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.28643798828125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 42.387 1 46.145 45.645 46.645 3.7579 0 0 0 0.39326 1 7842 7842 2.3027 1.5091 1 9901 4998 6104 6110 12308 12308 0.07004903608185487 GARLPVWPAAL 11 Unmodified _GARLPVWPAAL_ 0 0 0 MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|1|1|sense MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|1|1|sense MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 575.8421020507812 2 575.840208 1149.66586 NaN NaN NaN NaN NaN NaN NaN 86.286 1 86.286 85.786 86.786 0 0 0 0 0.38417 1 20627 20627 3.2813 0 1 9902 16469 6105 6111 12309 12309 0.0970170387656708 GARRAISALCD 11 Unmodified _GARRAISALCD_ 0 0 0 REV__ENSG00000100304|ENST00000216129|TTLL12 REV__ENSG00000100304|ENST00000216129|TTLL12 MSMS UPN47_class_I_Rep_3 4 566.800537109375 2 566.798214 1131.58188 NaN NaN NaN NaN NaN NaN NaN 37.626 1 40.867 40.367 41.367 3.2414 0 0 0 0.38417 1 7236 7236 1.0715 0.27783 1 + 9903 18104 6106 6112 12310 12310 0.02134804717343286 GASPAPQPKK 10 Unmodified _GASPAPQPKK_ 0 0 0 ENSG00000178394|ENST00000323865|HTR1A ENSG00000178394|ENST00000323865|HTR1A ENSG00000178394|ENST00000323865|HTR1A MSMS UPN48_class_I_Rep_2 6 490.7813720703125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 117.02 1 120.68 120.18 121.18 3.6607 0 0 0 0.53105 1 28037 28037 1.4819 0.68827 1 9904 4823 6107 6113 12311 12311 0.054488761630864246 GASQAGMTGY 10 Oxidation (M) _GASQAGM(Oxidation (M))TGY_ GASQAGM(1)TGY GASQAGM(110)TGY 0 0 1 ENSG00000158710|ENST00000368097|TAGLN2;ENSG00000144834|ENST00000478951|TAGLN3;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF;ENSG00000149591|ENST00000392951|TAGLN ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-MSMS UPN46_class_I_Rep_3 1 479.7001953125 2 479.700374 957.386196 -0.12681 -6.083E-05 -0.28282 -0.00013567 -0.40963 -0.0001965 479.7002374622438 24.09 0.74014 24.09 23.689 24.429 0 108 78 2 0 0 0 0.00024334 3 3123 3089;3123;3158 107.1 63.241 1 176630 9905 3376 6108 6114 12312;12313;12314 12313 108 -0.09420205527339931 GASQAGMTGY 10 Oxidation (M) _GASQAGM(Oxidation (M))TGY_ GASQAGM(1)TGY GASQAGM(44)TGY 0 0 1 ENSG00000158710|ENST00000368097|TAGLN2;ENSG00000144834|ENST00000478951|TAGLN3;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF;ENSG00000149591|ENST00000392951|TAGLN ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MSMS UPN46_class_I_Rep_3 1 479.7005615234375 2 479.700374 957.386196 NaN NaN NaN NaN NaN NaN NaN 23.733 1 23.733 23.233 24.233 0 0 0 0 0.53105 1 3023 3023 43.982 21.246 1 9906 3376 6108 6114 12315 12315 108 -0.09420205527339931 GASQAGMTGY 10 Oxidation (M) _GASQAGM(Oxidation (M))TGY_ GASQAGM(1)TGY GASQAGM(58)TGY 0 0 1 ENSG00000158710|ENST00000368097|TAGLN2;ENSG00000144834|ENST00000478951|TAGLN3;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF;ENSG00000149591|ENST00000392951|TAGLN ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MSMS UPN46_class_I_Rep_3 1 479.7003173828125 2 479.700374 957.386196 NaN NaN NaN NaN NaN NaN NaN 23.856 1 23.856 23.356 24.356 0 0 0 0 0.53105 1 3055 3055 57.722 28.64 1 9907 3376 6108 6114 12316 12316 108 -0.09420205527339931 GATARTGGRKF 11 Unmodified _GATARTGGRKF_ 0 0 0 REV__nc|ENSG00000110841|Q86W92-3|PPFIBP1 REV__nc|ENSG00000110841|Q86W92-3|PPFIBP1 MSMS UPN46_class_I_Rep_3 1 561.3138427734375 2 561.312346 1120.61014 NaN NaN NaN NaN NaN NaN NaN 49.291 1 49.291 48.791 49.791 0 0 0 0 0.38417 1 10337 10337 0.96228 0.2719 1 + 9908 18439 6109 6115 12317 12317 0.05465870688931318 GAVAGLLLSL 10 Unmodified _GAVAGLLLSL_ 0 0 0 REV__ENSG00000175535|ENST00000369221|PNLIP REV__ENSG00000175535|ENST00000369221|PNLIP MULTI-MSMS UPN48_class_I_Rep_2 6 457.2887268066406 2 457.289485 912.564418 0.16634 7.6064E-05 -0.11438 -5.2302E-05 0.051961 2.3761E-05 457.28943572090867 78.913 0.50175 82.546 82.338 82.84 3.6331 74 56 2 0 0 0 0.38932 1 18747 18747 20.454 2.3073 1 162080 + 9909 20559 6110 6116 12318 12318 0.10463832454001931 GAVAGLLLSL 10 Unmodified _GAVAGLLLSL_ 0 0 0 REV__ENSG00000175535|ENST00000369221|PNLIP REV__ENSG00000175535|ENST00000369221|PNLIP MULTI-MATCH UPN47_class_I_Rep_3 4 2 457.289485 912.564418 -0.13949 -6.3788E-05 -0.14204 -6.4954E-05 -0.28153 -0.00012874 457.2893776507582 79.183 0.084854 82.478 82.447 82.531 3.295 -0.11027 4.6041E-05 NaN 20.454 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 42990 + 9910 20559 6110 6116 0.10463832454001931 GAVCTPRK 8 Unmodified _GAVCTPRK_ 0 0 0 L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|10|1|sense L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|10|1|sense L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 416.22735595703125 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 102.03 1 102.03 101.53 102.53 0 0 0 0 0.40625 1 24896 24896 2.3027 1.6124 1 9911 8820 6111 6117 12319 12319 0.02125306539687699 GAVDKGQH 8 Unmodified _GAVDKGQH_ 0 0 0 ENST00000520328.5_1_14:91691273-91691387:+|nuORF ENST00000520328.5_1_14:91691273-91691387:+|nuORF ENST00000520328.5_1_14:91691273-91691387:+|nuORF MSMS UPN47_class_I_Rep_3 4 406.24835205078125 2 406.206484 810.398415 NaN NaN NaN NaN NaN NaN NaN 83.941 1 87.291 86.791 87.791 3.35 0 0 0 0.40738 1 21059 21059 0.79363 0 1 9912 7225 6112 6118 12320 12320 -0.014368010020007205 GAVGSDRWRW 10 Unmodified _GAVGSDRWRW_ 0 0 0 ENST00000568266.5_1_16:28835580-28835706:+|nuORF ENST00000568266.5_1_16:28835580-28835706:+|nuORF ENST00000568266.5_1_16:28835580-28835706:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 595.2957763671875 2 595.296696 1188.57884 0.39707 0.00023637 -1.2673 -0.00075445 -0.87028 -0.00051807 595.2959617444941 57.887 0.50231 61.324 61.127 61.63 3.437 46 29 2 0 0 0 0.56078 1 13391 13391 3.2813 0.28607 1 125240 9913 7501 6113 6119 12321 12321 -0.0079070234514802 GAVGSDRWRW 10 Unmodified _GAVGSDRWRW_ 0 0 0 ENST00000568266.5_1_16:28835580-28835706:+|nuORF ENST00000568266.5_1_16:28835580-28835706:+|nuORF ENST00000568266.5_1_16:28835580-28835706:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 595.296696 1188.57884 0.5194 0.0003092 -1.4397 -0.00085705 -0.9203 -0.00054785 595.7972916367468 58.16 0.55471 61.441 61.19 61.745 3.2818 0.044497 -0.0001657 NaN 3.2813 58 33 2 NaN NaN NaN NaN 0 NaN NaN 0 150440 9914 7501 6113 6119 -0.0079070234514802 GAVLSTFFDKL 11 Unmodified _GAVLSTFFDKL_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-MSMS UPN48_class_I_Rep_2 6 599.3296508789062 2 599.329339 1196.64412 0.58544 0.00035087 0.55039 0.00032987 1.1358 0.00068074 599.3291866741263 57.694 1.0324 61.208 60.738 61.771 3.5142 157 76 3 0 0 0 0.61292 1 12495 12495 4.897 1.3005 1 274630 + 9915 18421 6114 6120 12322 12322 0.05366854337330551 GAVPIFIEL 9 Unmodified _GAVPIFIEL_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_1 5 479.7834167480469 2 479.784036 957.553519 0.11837 5.679E-05 -0.83126 -0.00039882 -0.71289 -0.00034203 479.78371120962635 90.642 0.093842 94.268 94.231 94.325 3.626 13 12 2 0 0 0 0.13631 1 21792 21792 26.884 2.8631 1 46049 9916 2065 6115 6121 12323 12323 0.07304430079705071 GAVPIFIEL 9 Unmodified _GAVPIFIEL_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 479.784036 957.553519 0.23336 0.00011196 -0.062538 -3.0005E-05 0.17083 8.1959E-05 479.78393459874786 90.153 0.080467 93.9 93.879 93.959 3.7471 -0.18425 0.00014193 NaN 26.884 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 76969 9917 2065 6115 6121 0.07304430079705071 GAWKIMGF 8 Unmodified _GAWKIMGF_ 0 0 0 ENST00000392253.2_1_2:202276919-202277543:-|nuORF;ENSG00000136021|ENST00000360820|SCYL2 ENST00000392253.2_1_2:202276919-202277543:-|nuORF ENST00000392253.2_1_2:202276919-202277543:-|nuORF MSMS UPN48_class_I_Rep_1 5 455.25201416015625 2 455.236199 908.457844 NaN NaN NaN NaN NaN NaN NaN 25.146 1 28.713 28.213 29.213 3.5667 0 0 0 0.40738 1 2884 2884 0.79363 0 1 9918 2945 6116 6122 12324 12324 -4.621312166364078E-05 GAWKIMGF 8 Unmodified _GAWKIMGF_ 0 0 0 ENST00000392253.2_1_2:202276919-202277543:-|nuORF;ENSG00000136021|ENST00000360820|SCYL2 ENST00000392253.2_1_2:202276919-202277543:-|nuORF ENST00000392253.2_1_2:202276919-202277543:-|nuORF MSMS UPN48_class_I_Rep_2 6 455.02679443359375 2 455.236199 908.457844 NaN NaN NaN NaN NaN NaN NaN 27.928 1 31.559 31.059 32.059 3.6311 0 0 0 0.40738 1 3775 3775 0.79363 0 1 9919 2945 6116 6122 12325 12325 -4.621312166364078E-05 GCCGQTYDD 9 Unmodified _GCCGQTYDD_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MSMS UPN48_class_I_Rep_3 7 481.27178955078125 2 481.154942 960.295332 NaN NaN NaN NaN NaN NaN NaN 23.825 1 27.594 27.094 28.094 3.769 0 0 0 0.4029 1 2674 2674 0 0 1 9920 4301 6117 6123 12326 12326 -0.1864041756715551 GCCYSCEEDSC 11 Unmodified _GCCYSCEEDSC_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS UPN48_class_I_Rep_1 5 599.6611938476562 2 599.661417 1197.30828 NaN NaN NaN NaN NaN NaN NaN 119.95 1 123.56 123.06 124.06 3.6189 0 0 0 0.38417 1 29286 29286 0 0 1 9921 2238 6118 6124 12327 12327 -0.2824809056155573 GCFQMRCCCCC 11 Unmodified _GCFQMRCCCCC_ 0 0 0 nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2 nc|ENSG00000157765|O95436-2|SLC34A2 nc|ENSG00000157765|O95436-2|SLC34A2 MSMS UPN47_class_I_Rep_2 3 628.6851806640625 2 628.685138 1255.35572 NaN NaN NaN NaN NaN NaN NaN 118.65 1 122.14 121.64 122.64 3.4822 0 0 0 0.38417 1 29042 29042 0 0 1 9922 3776 6119 6125 12328 12328 -0.26174129367541354 GCLLLRYY 8 Unmodified _GCLLLRYY_ 0 0 0 REV__L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|127|2|anti-sense REV__L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|127|2|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7657470703125 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 32.507 1 36.034 35.534 36.534 3.5266 0 0 0 0.40404 1 4953 4953 5.2307 0.90143 1 + 9923 24324 6120 6126 12329 12329 0.021393194050574493 GCMDILIL 8 Unmodified _GCMDILIL_ 0 0 0 L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|140|2|anti-sense L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|140|2|anti-sense L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|140|2|anti-sense MSMS UPN46_class_I_Rep_3 1 439.2369384765625 2 439.229725 876.444896 NaN NaN NaN NaN NaN NaN NaN 100.28 1 100.28 99.783 100.78 0 0 0 0 0.40738 1 24443 24443 0.79363 0 1 9924 9489 6121 6127 12330 12330 0.0017317951344466564 GCPQRCVNTA 10 Unmodified _GCPQRCVNTA_ 0 0 0 ENSG00000172889|ENST00000308874|EGFL7 ENSG00000172889|ENST00000308874|EGFL7 ENSG00000172889|ENST00000308874|EGFL7 MSMS UPN47_class_I_Rep_2 3 524.7352905273438 2 524.736768 1047.45898 NaN NaN NaN NaN NaN NaN NaN 23.573 1 27.039 26.539 27.539 3.4655 0 0 0 0.53105 1 2985 2985 3.9444 1.3669 1 9925 4595 6122 6128 12331 12331 -0.0628477500556528 GCPVWCWK 8 Unmodified _GCPVWCWK_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|370|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|370|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|370|3|anti-sense MSMS UPN48_class_I_Rep_1 5 489.7202453613281 2 489.719858 977.425164 NaN NaN NaN NaN NaN NaN NaN 82.93 1 86.517 86.017 87.017 3.5871 0 0 0 0.40738 1 19819 19819 0.79363 0 1 9926 14692 6123 6129 12332 12332 -0.06445151706680008 GCRLFSICQF 10 Unmodified _GCRLFSICQF_ 0 0 0 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 MSMS UPN48_class_I_Rep_3 7 586.8173217773438 2 587.280812 1172.54707 NaN NaN NaN NaN NaN NaN NaN 27.959 1 31.701 31.201 32.201 3.7424 0 0 0 0.53105 1 3741 3741 1.6526 0 1 9927 2171 6124 6130 12333 12333 -0.03230154414973185 GCWWLTPL 8 Unmodified _GCWWLTPL_ 0 0 0 AluJb_dup88515|chr13:28017246-28017526:-|2.2982385161836705|0.0064299878336214|8.48|151.0|4|2|sense AluJb_dup88515|chr13:28017246-28017526:-|2.2982385161836705|0.0064299878336214|8.48|151.0|4|2|sense AluJb_dup88515|chr13:28017246-28017526:-|2.2982385161836705|0.0064299878336214|8.48|151.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 488.2421569824219 2 488.241481 974.468409 NaN NaN NaN NaN NaN NaN NaN 64.682 1 64.682 64.182 65.182 0 0 0 0 0.40746 1 14574 14574 0.69038 0 1 9928 78 6125 6131 12334 12334 -0.01984638657756932 GCYFITAW 8 Unmodified _GCYFITAW_ 0 0 0 L1MD1_dup3258|chr8:60593537-60594482:+|4.4828102626023565|0.1127811008168474|5.31|151.0|64|2|anti-sense L1MD1_dup3258|chr8:60593537-60594482:+|4.4828102626023565|0.1127811008168474|5.31|151.0|64|2|anti-sense L1MD1_dup3258|chr8:60593537-60594482:+|4.4828102626023565|0.1127811008168474|5.31|151.0|64|2|anti-sense MSMS UPN48_class_I_Rep_2 6 480.7173156738281 2 480.717839 959.421125 NaN NaN NaN NaN NaN NaN NaN 118.1 1 121.76 121.26 122.26 3.6627 0 0 0 0.40604 1 28310 28310 2.5775 0 1 9929 11933 6126 6132 12335 12335 -0.06020917928765357 GCYHLRPL 8 Unmodified _GCYHLRPL_ 0 0 0 REV__ENST00000497415.1_1_3:128359957-128369658:-|nuORF REV__ENST00000497415.1_1_3:128359957-128369658:-|nuORF MSMS UPN47_class_I_Rep_2 3 479.7365417480469 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 31.087 1 34.559 34.059 35.059 3.4718 0 0 0 0.40738 1 5217 5217 0.79363 0 1 + 9930 22668 6127 6133 12336 12336 0.005012819480612052 GDDVVVTVVI 10 Unmodified _GDDVVVTVVI_ 0 0 0 ENST00000509621.1_3_5:89989878-90055411:+|nuORF;ENSG00000164199|ENST00000405460|ADGRV1 ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENST00000509621.1_3_5:89989878-90055411:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 508.21160888671875 2 508.28714 1014.55973 -0.41094 -0.00020887 -2.1468 -0.0010912 -2.5578 -0.0013001 508.2865096914555 27.358 0.35977 30.7 30.5 30.86 3.3422 44 31 2 0 0 0 0.84575 1 4108 4108 0.40072 0.40072 1 42933 9931 4096 6128 6134 12337 12337 0.053029035205895525 GDELFHYL 8 Unmodified _GDELFHYL_ 0 0 0 L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|108|2|anti-sense;L1MEc_dup2383|chr2:89575914-89577159:-|1.263039850367669|0.1474267064561223|3.1|151.0|60|1|anti-sense L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|108|2|anti-sense L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|108|2|anti-sense MSMS UPN47_class_I_Rep_2 3 497.2393493652344 2 497.23745 992.460347 NaN NaN NaN NaN NaN NaN NaN 27.136 1 30.635 30.135 31.135 3.4986 0 0 0 0.40738 1 4029 4029 0.79363 0 1 9932 13082 6129 6135 12338 12338 -0.03618494373529302 GDGLLSWW 8 Unmodified _GDGLLSWW_ 0 0 0 L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|84|2|anti-sense L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|84|2|anti-sense L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|84|2|anti-sense MSMS UPN48_class_I_Rep_2 6 467.29547119140625 2 467.226885 932.439217 NaN NaN NaN NaN NaN NaN NaN 90.076 1 93.823 93.323 94.323 3.7471 0 0 0 0.40746 1 21472 21472 0.69038 0 1 9933 9562 6130 6136 12339 12339 -0.029704596823876273 GDIPSVEYLL 10 Unmodified _GDIPSVEYLL_ 0 0 0 nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1 nc|ENSG00000138376|Q99728-3|BARD1 nc|ENSG00000138376|Q99728-3|BARD1 MSMS UPN48_class_I_Rep_2 6 553.2940673828125 2 553.292422 1104.57029 NaN NaN NaN NaN NaN NaN NaN 33.188 1 36.838 36.338 37.338 3.6497 0 0 0 0.53105 1 5211 5211 1.4819 0 1 9934 3082 6131 6137 12340 12340 0.02218886175000989 GDLFPNLTVI 10 Unmodified _GDLFPNLTVI_ 0 0 0 ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R MSMS UPN48_class_I_Rep_3 7 544.8012084960938 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 17.57 1 21.134 20.634 21.634 3.5637 0 0 0 0.53105 1 1021 1021 1.3295 0 1 9935 3175 6132 6138 12341 12341 0.05106896274492101 GDPFRTLF 8 Unmodified _GDPFRTLF_ 0 0 0 REV__ENST00000599530.1_2_19:52403289-52403544:-|nuORF REV__ENST00000599530.1_2_19:52403289-52403544:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.7479553222656 2 476.747985 951.481417 0.051679 2.4638E-05 -0.048654 -2.3196E-05 0.0030253 1.4423E-06 476.7479490980646 70.724 0.52472 73.936 73.742 74.267 3.2113 65 43 2 0 0 0 0.82752 1 17342 17342 5.2307 0 1 71980 + 9936 23207 6133 6139 12342 12342 0.0037351572600528016 GDQAGTSLVVL 11 Unmodified _GDQAGTSLVVL_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MSMS UPN46_class_I_Rep_3 1 530.2910766601562 2 530.287671 1058.56079 NaN NaN NaN NaN NaN NaN NaN 113.19 1 113.19 112.69 113.69 0 0 0 0 0.38417 1 27956 27956 0.96228 0.2719 1 + 9937 17825 6134 6140 12343 12343 0.03385117889479261 GDQAGTSLVVL 11 Unmodified _GDQAGTSLVVL_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MSMS UPN46_class_I_Rep_3 1 530.2899780273438 2 530.287671 1058.56079 NaN NaN NaN NaN NaN NaN NaN 116.45 1 116.45 115.95 116.95 0 0 0 0 0.38417 1 28828 28828 0.96228 0.2719 1 + 9938 17825 6134 6140 12344 12344 0.03385117889479261 GDQAGTSLVVL 11 Unmodified _GDQAGTSLVVL_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MSMS UPN46_class_I_Rep_3 1 530.2898559570312 2 530.287671 1058.56079 NaN NaN NaN NaN NaN NaN NaN 117.85 1 117.85 117.35 118.35 0 0 0 0 0.38417 1 29228 29228 0.96228 0.2719 1 + 9939 17825 6134 6140 12345 12345 0.03385117889479261 GDQEPFGR 8 Unmodified _GDQEPFGR_ 0 0 0 REV__ENSG00000105248.16,YJU2,chr19,+,I6.1,4258424,4261993|23|6.9|1|intron REV__ENSG00000105248.16,YJU2,chr19,+,I6.1,4258424,4261993|23|6.9|1|intron MSMS UPN47_class_I_Rep_1 2 453.2096862792969 2 453.209224 904.403895 NaN NaN NaN NaN NaN NaN NaN 95.085 1 98.836 98.336 99.336 3.7508 0 0 0 0.40746 1 23609 23609 0.69038 0 1 + 9940 18282 6135 6141 12346 12346 -0.05213122210182064 GDQRKARMHE 10 Unmodified _GDQRKARMHE_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MSMS UPN47_class_I_Rep_2 3 614.3037719726562 2 614.304195 1226.59384 NaN NaN NaN NaN NaN NaN NaN 52.887 1 56.213 55.713 56.713 3.3266 0 0 0 0.53105 1 11830 11830 5.7319 1.5423 1 9941 2731 6136 6142 12347 12347 -0.010395785394393897 GDRESSHCCDT 11 Unmodified _GDRESSHCCDT_ 0 0 0 REV__ENSG00000117000.9,RLF,chr1,+,I6.1,40222711,40231516|30|10.12|1|intron REV__ENSG00000117000.9,RLF,chr1,+,I6.1,40222711,40231516|30|10.12|1|intron MSMS UPN46_class_I_Rep_3 1 403.8125915527344 3 403.813488 1208.41863 NaN NaN NaN NaN NaN NaN NaN 111.05 1 111.05 110.55 111.55 0 0 0 0 0.38417 1 27368 27368 0.36667 0.13083 1 + 9942 18619 6137 6143 12348 12348 -0.17723786186661528 GDRESSHCCDT 11 Unmodified _GDRESSHCCDT_ 0 0 0 REV__ENSG00000117000.9,RLF,chr1,+,I6.1,40222711,40231516|30|10.12|1|intron REV__ENSG00000117000.9,RLF,chr1,+,I6.1,40222711,40231516|30|10.12|1|intron MSMS UPN47_class_I_Rep_2 3 403.8134765625 3 403.813488 1208.41863 NaN NaN NaN NaN NaN NaN NaN 111.45 1 114.97 114.47 115.47 3.5226 0 0 0 0.38417 1 27124 27124 0.073264 0.073264 1 + 9943 18619 6137 6143 12349 12349 -0.17723786186661528 GDRGGFNLY 9 Unmodified _GDRGGFNLY_ 0 0 0 nc|ENSG00000148362|Q9BUH6-2|PAXX;ENSG00000148362|ENST00000371620|PAXX nc|ENSG00000148362|Q9BUH6-2|PAXX nc|ENSG00000148362|Q9BUH6-2|PAXX MULTI-MSMS UPN47_class_I_Rep_1 2 499.7384033203125 2 499.738148 997.461744 -0.2805 -0.00014018 0.50837 0.00025405 0.22787 0.00011388 499.73830651858657 26.434 0.83766 30.196 29.971 30.808 3.7624 180 73 3 0 0 0 0.28552 1 3895 3895 14.838 14.838 1 243690 9944 3504 6138 6144 12350 12350 -0.0370886028475752 GDSGLFALYL 10 Unmodified _GDSGLFALYL_ 0 0 0 L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.7485961914062 2 528.274032 1054.53351 0.39895 0.00021075 -0.47568 -0.00025129 -0.076735 -4.0537E-05 528.2737689030798 81.551 0.30457 84.874 84.756 85.061 3.3231 36 30 2 0 0 0 0.40227 1 20430 20430 19.257 0 1 84157 9945 11830 6139 6145 12351 12351 0.008426343491009902 GDSGLFALYL 10 Unmodified _GDSGLFALYL_ 0 0 0 L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 528.774658203125 2 528.274032 1054.53351 0.39895 0.00021075 -0.47568 -0.00025129 -0.076735 -4.0537E-05 528.2737689030798 81.551 0.30457 84.874 84.756 85.061 3.3231 36 30 2 0 0 0 0.84575 1 20387 20387 9.3831 0 1 84157 9946 11830 6139 6145 12352 12352 0.008426343491009902 GDSGLFALYL 10 Unmodified _GDSGLFALYL_ 0 0 0 L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense L1MCa_dup5692|chr12:132993750-132994431:-|2.318909480543052|0.0381995815435176|5.92|151.0|43|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 528.274032 1054.53351 0.24769 0.00013085 0.066779 3.5278E-05 0.31447 0.00016613 528.2741296101298 81.522 0.061401 84.906 84.867 84.928 3.3839 0.015896 0.00038785 NaN 19.257 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 55686 9947 11830 6139 6145 0.008426343491009902 GDSLVIFMEI 10 Unmodified _GDSLVIFMEI_ 0 0 0 REV__L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|354|3|anti-sense REV__L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|354|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 561.7881469726562 2 562.288825 1122.5631 0.37261 0.00020951 -3.2763 -0.0018422 -2.9037 -0.0016327 562.2874788521411 64.261 0.15274 67.616 67.6 67.753 3.3557 32 17 2 0 0 0 0.84575 1 15291 15291 18.146 0 1 175760 + 9948 29571 6140 6146 12353 12353 0.006718303029174422 GDTAAFVALL 10 Unmodified _GDTAAFVALL_ 0 0 0 REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2 REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2 MSMS UPN48_class_I_Rep_2 6 489.2689208984375 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 68.332 1 71.841 71.341 72.341 3.5083 0 0 0 0.53105 1 15753 15753 14.838 1.3304 1 + 9949 17548 6141 6147 12354 12354 0.03374651694673503 GDTGDESCDSY 11 Unmodified _GDTGDESCDSY_ 0 0 0 REV__nc|ENSG00000103995|O94986-2|CEP152 REV__nc|ENSG00000103995|O94986-2|CEP152 MSMS UPN48_class_I_Rep_2 6 574.6893310546875 2 574.687858 1147.36116 NaN NaN NaN NaN NaN NaN NaN 116.45 1 120.11 119.61 120.61 3.6607 0 0 0 0.38417 1 27893 27893 1.1933 0.39971 1 + 9950 18245 6142 6148 12355 12355 -0.2066234991125384 GDVFFIIF 8 Unmodified _GDVFFIIF_ 0 0 0 L1PA7_dup107|chr1:55113128-55115236:+|3.598755480701441|0.2827675691678906|3.67|151.0|83|1|anti-sense L1PA7_dup107|chr1:55113128-55115236:+|3.598755480701441|0.2827675691678906|3.67|151.0|83|1|anti-sense L1PA7_dup107|chr1:55113128-55115236:+|3.598755480701441|0.2827675691678906|3.67|151.0|83|1|anti-sense MSMS UPN47_class_I_Rep_2 3 479.2578125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 119.33 1 122.81 122.31 123.31 3.4793 0 0 0 0.40738 1 29225 29225 0.79363 0 1 9951 14709 6143 6149 12356 12356 0.02076472016904063 GDWLQERYEI 10 Unmodified _GDWLQERYEI_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENSG00000179335|ENST00000395066|CLK3 nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-SECPEP UPN47_class_I_Rep_2 3 437.3108215332031 3 436.878815 1307.61462 -0.32883 -0.00014366 2.6085 0.0011396 2.2797 0.00099594 436.87945702118407 75.295 0.12502 78.607 78.568 78.693 3.3127 14 9 2 0 0 0 0.84575 1 18597 18597 0.15932 0.064481 1 60166 9952 4760 6144 6150 12357 12357 -0.026887096788186682 GDWLQERYEI 10 Unmodified _GDWLQERYEI_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENSG00000179335|ENST00000395066|CLK3 nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-MATCH UPN46_class_I_Rep_3 1 3 436.878815 1307.61462 0.129 5.6356E-05 1.3557 0.00059227 1.4847 0.00064863 436.8793328281341 78.32 0.081573 78.32 78.273 78.355 0 -0.20516 -0.001117 NaN 0.15932 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 58009 9953 4760 6144 6150 -0.026887096788186682 GDWLQERYEI 10 Unmodified _GDWLQERYEI_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENSG00000179335|ENST00000395066|CLK3 nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.878815 1307.61462 -0.37085 -0.00016201 2.6952 0.0011775 2.3243 0.0010154 436.879594651655 75.442 0.094398 78.688 78.644 78.738 3.2464 0.16326 0.00063854 NaN 0.15932 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 69787 9954 4760 6144 6150 -0.026887096788186682 GDWLQERYEI 10 Unmodified _GDWLQERYEI_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;ENSG00000179335|ENST00000395066|CLK3 nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-MATCH UPN48_class_I_Rep_1 5 3 436.878815 1307.61462 -0.01188 -5.1901E-06 3.4281 0.0014977 3.4163 0.0014925 436.8799810264897 74.994 0.069092 78.484 78.455 78.524 3.49 -0.040679 0.0015992 NaN 0.15932 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 48985 9955 4760 6144 6150 -0.026887096788186682 GDWNMGLD 8 Unmodified _GDWNMGLD_ 0 0 0 MSTB_dup1200|chr2:208243949-208244368:+|2.1590884431058424|0.4698876703965448|2.2|151.0|9|3|sense MSTB_dup1200|chr2:208243949-208244368:+|2.1590884431058424|0.4698876703965448|2.2|151.0|9|3|sense MSTB_dup1200|chr2:208243949-208244368:+|2.1590884431058424|0.4698876703965448|2.2|151.0|9|3|sense MSMS UPN47_class_I_Rep_3 4 453.7848205566406 2 454.18436 906.354167 NaN NaN NaN NaN NaN NaN NaN 62.986 1 66.155 65.655 66.655 3.1698 0 0 0 0.40604 1 14971 14971 2.5775 0 1 9956 16567 6145 6151 12358 12358 -0.10275573210503808 GDYDDSDEDE 10 Unmodified _GDYDDSDEDE_ 0 0 0 REV__ENSG00000074201|ENST00000525428|CLNS1A REV__ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS UPN47_class_I_Rep_3 4 580.180908203125 2 580.18092 1158.34729 0.46028 0.00026705 -0.25213 -0.00014628 0.20815 0.00012077 580.1807372864281 75.278 0.90211 78.524 78.178 79.08 3.2464 284 85 5 0 0 0 0.56543 1 18812 18812 0 0 1 860170 + 9957 17845 6146 6152 12359 12359 -0.22555304138700194 GDYKTPANLK 10 Unmodified _GDYKTPANLK_ 0 0 0 ENSG00000128294|ENST00000338754|TPST2 ENSG00000128294|ENST00000338754|TPST2 ENSG00000128294|ENST00000338754|TPST2 MSMS UPN47_class_I_Rep_2 3 553.79833984375 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 32.671 1 36.126 35.626 36.626 3.4547 0 0 0 0.53105 1 5690 5690 1.1933 0.39971 1 9958 2587 6147 6153 12360 12360 0.02820824126365551 GDYRSLAPVA 10 Unmodified _GDYRSLAPVA_ 0 0 0 MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|43|3|anti-sense MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|43|3|anti-sense MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|43|3|anti-sense MSMS UPN47_class_I_Rep_3 4 524.7901000976562 2 524.774731 1047.53491 NaN NaN NaN NaN NaN NaN NaN 35.698 1 38.953 38.453 39.453 3.2547 0 0 0 0.53105 1 6643 6643 3.5965 1.5367 1 9959 16051 6148 6154 12361 12361 0.013042684378660852 GEAELLRGF 9 Unmodified _GEAELLRGF_ 0 0 0 ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3 ENST00000503782.1_1_5:176734591-176737711:-|nuORF ENST00000503782.1_1_5:176734591-176737711:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.26361083984375 2 496.263999 990.513445 0.11862 5.8867E-05 0.19643 9.748E-05 0.31505 0.00015635 496.2640980418253 55.173 0.67855 58.651 58.324 59.003 3.4785 56 40 2 0 0 0 0.26468 2 12556 12556;12562 16.149 8.8599 1 102560 9960 5586 6149 6155 12362;12363 12362 0.017808834091511017 GEAELLRGF 9 Unmodified _GEAELLRGF_ 0 0 0 ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3 ENST00000503782.1_1_5:176734591-176737711:-|nuORF ENST00000503782.1_1_5:176734591-176737711:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 496.2642822265625 2 496.263999 990.513445 0.32638 0.00016197 0.24585 0.00012201 0.57224 0.00028398 496.2640681367879 55.395 0.50026 58.705 58.476 58.976 3.3102 42 27 2 0 0 0 0.12795 2 12621 12621;12662 28.495 6.7479 1 97286 9961 5586 6149 6155 12364;12365 12364 0.017808834091511017 GEAELLRGF 9 Unmodified _GEAELLRGF_ 0 0 0 ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3 ENST00000503782.1_1_5:176734591-176737711:-|nuORF ENST00000503782.1_1_5:176734591-176737711:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 496.26470947265625 2 496.263999 990.513445 0.19564 9.7088E-05 0.11798 5.8547E-05 0.31361 0.00015563 496.2640158709757 55.656 0.68048 58.834 58.475 59.156 3.1779 63 42 2 0 0 0 0.10225 3 12709 12673;12709;12767 33.445 18.226 1 107380 9962 5586 6149 6155 12366;12367;12368 12367 0.017808834091511017 GEALLTHLL 9 Unmodified _GEALLTHLL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MSMS UPN48_class_I_Rep_2 6 483.78448486328125 2 483.784567 965.554582 NaN NaN NaN NaN NaN NaN NaN 65.303 1 68.782 68.282 69.282 3.4792 0 0 0 0.2408 1 14834 14834 13.906 2.4113 1 9963 3220 6150 6156 12369 12369 0.07042644448631563 GEAVGIKSF 9 Unmodified _GEAVGIKSF_ 0 0 0 nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7 nc|ENSG00000135424|Q13683-9|ITGA7 nc|ENSG00000135424|Q13683-9|ITGA7 MULTI-SECPEP UPN47_class_I_Rep_2 3 454.2796630859375 2 454.247818 906.481082 -0.51288 -0.00023298 -0.24993 -0.00011353 -0.76282 -0.00034651 454.2475964262763 40.468 0.39241 43.839 43.701 44.094 3.3712 32 25 2 0 0 0 0.11642 1 8098 8098 8.1555 0 1 44981 9964 2907 6151 6157 12370 12370 0.02410096006144613 GEAVVNRVF 9 Unmodified _GEAVVNRVF_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9 ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 495.77215576171875 2 495.771991 989.529429 -0.18136 -8.9911E-05 -0.23374 -0.00011588 -0.41509 -0.00020579 495.77186912364675 43.016 0.71284 46.703 46.397 47.11 3.6875 84 47 2 0 0 0 0.24936 1 8857 8857 17.113 3.2068 1 122750 9965 5703 6152 6158 12371 12371 0.03424589646044751 GEAVVNRVF 9 Unmodified _GEAVVNRVF_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9 ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 495.77178955078125 2 495.771991 989.529429 -0.054057 -2.68E-05 -0.047179 -2.339E-05 -0.10124 -5.019E-05 495.7718469582829 43.359 0.70911 46.717 46.443 47.152 3.358 72 44 2 0 0 0 0.11355 2 8953 8911;8953 31.268 17.362 1 138360 9966 5703 6152 6158 12372;12373 12373 0.03424589646044751 GEAVVNRVF 9 Unmodified _GEAVVNRVF_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9 ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 495.77227783203125 2 495.771991 989.529429 -0.081193 -4.0253E-05 -0.12758 -6.3252E-05 -0.20878 -0.00010351 495.7718778933014 43.514 0.85538 46.756 46.492 47.347 3.2419 83 51 3 0 0 0 0.11355 1 9049 9049 31.268 17.362 1 152870 9967 5703 6152 6158 12374 12374 0.03424589646044751 GEAVVNRVF 9 Unmodified _GEAVVNRVF_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9 ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 495.771991 989.529429 0.26823 0.00013298 -0.17349 -8.601E-05 0.094743 4.6971E-05 495.77169348834855 46.872 0.14028 46.872 46.819 46.959 0 0.11006 -4.3217E-05 NaN 31.268 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 91936 9968 5703 6152 6158 0.03424589646044751 GECMQGSSHCC 11 Unmodified _GECMQGSSHCC_ 0 0 0 L1PBa_dup930|chr6:110688378-110689981:+|1.8749759236046173|0.0083681873154753|7.81|151.0|56|1|anti-sense L1PBa_dup930|chr6:110688378-110689981:+|1.8749759236046173|0.0083681873154753|7.81|151.0|56|1|anti-sense L1PBa_dup930|chr6:110688378-110689981:+|1.8749759236046173|0.0083681873154753|7.81|151.0|56|1|anti-sense MSMS UPN46_class_I_Rep_3 1 571.1802978515625 2 571.180111 1140.34567 NaN NaN NaN NaN NaN NaN NaN 51.635 1 51.635 51.135 52.135 0 0 0 0 0.38417 1 10990 10990 0 0 1 9969 15396 6153 6159 12375 12375 -0.21888954505266156 GEDAKKKKK 9 Unmodified _GEDAKKKKK_ 0 0 0 REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|9|3|sense REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.3140869140625 2 516.314023 1030.61349 0.36851 0.00019027 -0.18043 -9.3158E-05 0.18809 9.7111E-05 516.3138671160206 90.815 0.41367 94.505 94.373 94.786 3.6899 105 54 3 0 0 0 0.50088 1 22718 22718 0.52476 0 1 415050 + 9970 31814 6154 6160 12376 12376 0.09941120742928433 GEDAKKKKK 9 Unmodified _GEDAKKKKK_ 0 0 0 REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|9|3|sense REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|9|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 516.314023 1030.61349 0.32384 0.00016721 0.0028345 1.4635E-06 0.32668 0.00016867 516.3139614208568 94.482 0.15084 94.482 94.376 94.527 0 0.019672 3.8647E-05 NaN 0.52476 35 18 2 NaN NaN NaN NaN 0 NaN NaN 0 491300 + 9971 31814 6154 6160 0.09941120742928433 GEDAKKKKK 9 Unmodified _GEDAKKKKK_ 0 0 0 REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|9|3|sense REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|9|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 516.314023 1030.61349 0.24553 0.00012677 0.20934 0.00010808 0.45487 0.00023485 516.3139372759539 91.038 0.21513 94.5 94.423 94.638 3.4613 0.037193 0.00025189 NaN 0.52476 49 28 2 NaN NaN NaN NaN 0 NaN NaN 0 313880 + 9972 31814 6154 6160 0.09941120742928433 GEDGRINLF 9 Unmodified _GEDGRINLF_ 0 0 0 nc|ENSG00000120253|Q8NFH3-2|NUP43;ENSG00000120253|ENST00000340413|NUP43 nc|ENSG00000120253|Q8NFH3-2|NUP43 nc|ENSG00000120253|Q8NFH3-2|NUP43 MULTI-MSMS UPN47_class_I_Rep_3 4 510.758544921875 2 510.759081 1019.50361 0.35443 0.00018103 0.10062 5.1395E-05 0.45505 0.00023242 510.75896068827444 51.749 0.50471 54.955 54.719 55.223 3.2055 40 25 2 0 0 0 0.32682 1 11528 11528 12.241 12.241 1 65280 9973 2315 6155 6161 12377 12377 -0.005363045962440083 GEDSTYKFF 9 Unmodified _GEDSTYKFF_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN47_class_I_Rep_1 2 547.24560546875 2 547.245472 1092.47639 0.33895 0.00018549 -0.27455 -0.00015025 0.064398 3.5241E-05 547.2453052061419 52.413 1.0661 55.972 55.531 56.597 3.5585 198 81 3 0 0 0 0.006303 3 11599 11599;11631;11830 114.2 83.429 1 839900 9974 4689 6156 6162 12378;12379;12380 12378 -0.06614832927266434 GEDSTYKFF 9 Unmodified _GEDSTYKFF_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN47_class_I_Rep_2 3 547.2437744140625 2 547.245472 1092.47639 0.49265 0.0002696 -0.34535 -0.00018899 0.1473 8.061E-05 547.2452597511602 52.646 1.1829 55.979 55.671 56.854 3.3332 215 89 3 0 0 0 0.0065234 5 11700 11700;11733;11928;11970;11974 114.2 76.228 1 779550 9975 4689 6156 6162 12381;12382;12383;12384;12385 12381 -0.06614832927266434 GEDSTYKFF 9 Unmodified _GEDSTYKFF_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MULTI-MSMS UPN47_class_I_Rep_3 4 547.2454833984375 2 547.245472 1092.47639 0.49027 0.0002683 -0.23118 -0.00012651 0.25909 0.00014179 547.2452835680497 52.797 1.0329 55.992 55.683 56.716 3.1948 167 72 3 0 0 0 0.0050147 2 11813 11813;12057 93.166 62.529 1 754880 9976 4689 6156 6162 12386;12387 12386 -0.06614832927266434 GEEATPRSYGF 11 Unmodified _GEEATPRSYGF_ 0 0 0 ENST00000368068.7_1_6:131949238-131949355:-|nuORF ENST00000368068.7_1_6:131949238-131949355:-|nuORF ENST00000368068.7_1_6:131949238-131949355:-|nuORF MSMS UPN47_class_I_Rep_1 2 404.7922058105469 3 405.187649 1212.54112 NaN NaN NaN NaN NaN NaN NaN 77.584 1 81.013 80.513 81.513 3.4289 0 0 0 0.38417 1 19257 19257 0.45452 0.046251 1 9977 6362 6157 6163 12388 12388 -0.05665258121302941 GEEDQSALY 9 Unmodified _GEEDQSALY_ 0 0 0 nc|ENSG00000204851|Q9ULN7-1|PNMA8B;ENSG00000204851|ENST00000599531|PNMA8B nc|ENSG00000204851|Q9ULN7-1|PNMA8B nc|ENSG00000204851|Q9ULN7-1|PNMA8B MSMS UPN47_class_I_Rep_1 2 505.8341979980469 2 506.216911 1010.41927 NaN NaN NaN NaN NaN NaN NaN 47.71 1 51.405 50.905 51.905 3.6951 0 0 0 0.38299 1 10228 10228 4.756 0 1 9978 5541 6158 6164 12389 12389 -0.08552300203666618 GEEIIHKY 8 Unmodified _GEEIIHKY_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MSMS UPN48_class_I_Rep_3 7 494.759033203125 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 37.234 1 40.897 40.397 41.397 3.663 0 0 0 0.40404 1 6253 6253 5.2307 2.3415 1 9979 4982 6159 6165 12390 12390 0.008294810348502324 GEEILITVL 9 Unmodified _GEEILITVL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MSMS UPN48_class_I_Rep_2 6 493.7919616699219 2 493.792058 985.569563 0.27 0.00013333 -0.016956 -8.3729E-06 0.25305 0.00012495 493.7919101375759 82.941 0.83914 86.61 86.232 87.071 3.669 241 106 3 0 0 0 0.1249 6 19693 19668;19693;19696;19728;19761;19791 29.082 0 1 510560 9980 2760 6160 6166 12391;12392;12393;12394;12395;12396 12392 0.07620091525939188 GEEILITVL 9 Unmodified _GEEILITVL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MSMS UPN48_class_I_Rep_2 6 493.7920227050781 2 493.792058 985.569563 0.27033 0.00013349 -0.11866 -5.8594E-05 0.15167 7.4895E-05 493.7918822488048 83.553 0.47588 87.234 87.048 87.524 3.6814 92 51 3 0 0 0 0.23293 2 19857 19857;19892 18.146 0 1 296970 9981 2760 6160 6166 12397;12398 12397 0.07620091525939188 GEEILITVL 9 Unmodified _GEEILITVL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MSMS UPN48_class_I_Rep_3 7 493.7918395996094 2 493.792058 985.569563 0.27485 0.00013572 -0.41774 -0.00020628 -0.14289 -7.056E-05 493.7917161553408 83.765 0.17564 87.493 87.374 87.55 3.7281 41 21 2 0 0 0 0.17897 1 19868 19868 22.736 0 1 248030 9982 2760 6160 6166 12399 12399 0.07620091525939188 GEEILITVL 9 Unmodified _GEEILITVL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MSMS UPN48_class_I_Rep_3 7 494.2933349609375 2 493.792058 985.569563 0.27429 0.00013544 -0.24545 -0.0001212 0.028845 1.4243E-05 493.79178898161564 83.99 0.28885 87.718 87.623 87.912 3.7281 47 34 2 0 0 0 0.30034 1 19968 19968 13.906 0 1 194040 9983 2760 6160 6166 12400 12400 0.07620091525939188 GEEILITVL 9 Unmodified _GEEILITVL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 493.792058 985.569563 0.18623 9.1959E-05 0.045569 2.2502E-05 0.2318 0.00011446 493.7919265188089 82.973 0.36916 86.56 86.491 86.861 3.5871 -0.043443 7.3397E-05 NaN 29.082 76 40 3 NaN NaN NaN NaN 0 NaN NaN 0 267280 9984 2760 6160 6166 0.07620091525939188 GEEILITVL 9 Unmodified _GEEILITVL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 493.792058 985.569563 0.27033 0.00013349 -0.11866 -5.8594E-05 0.15167 7.4895E-05 493.7918822488048 83.553 0.47588 87.234 87.048 87.524 3.6814 -0.051489 8.8535E-05 NaN 18.146 92 51 3 NaN NaN NaN NaN 0 NaN NaN 0 296970 9985 2760 6160 6166 0.07620091525939188 GEEQKLSFAE 10 Unmodified _GEEQKLSFAE_ 0 0 0 L1MEf_dup1075|chr2:62060354-62061520:-|1.0765126357785202|0.0073986289058131|7.18|150.0|8|1|sense L1MEf_dup1075|chr2:62060354-62061520:-|1.0765126357785202|0.0073986289058131|7.18|150.0|8|1|sense L1MEf_dup1075|chr2:62060354-62061520:-|1.0765126357785202|0.0073986289058131|7.18|150.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 569.274658203125 2 569.274761 1136.53497 0.40317 0.00022951 -0.094757 -5.3943E-05 0.30841 0.00017557 569.2746152606892 52.479 0.36923 52.479 52.364 52.733 0 63 43 2 0 0 0 0.54822 1 11270 11270 5.7319 0.43497 1 145920 9986 13235 6161 6167 12401 12401 -0.027837763527941206 GEERRRVN 8 Unmodified _GEERRRVN_ 0 0 0 ENSG00000113525|ENST00000231454|IL5;nc|ENSG00000113525|P05113-2|IL5 ENSG00000113525|ENST00000231454|IL5 ENSG00000113525|ENST00000231454|IL5 MSMS UPN46_class_I_Rep_3 1 508.2749938964844 2 508.273221 1014.53189 NaN NaN NaN NaN NaN NaN NaN 64.695 1 64.695 64.195 65.195 0 0 0 0 0.40604 1 14578 14578 2.5775 0 1 9987 2049 6162 6168 12402 12402 0.025204381037156054 GEEWKRGK 8 Unmodified _GEEWKRGK_ 0 0 0 L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 495.26165771484375 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.51 1 104.11 103.61 104.61 3.6084 0 0 0 0.40604 1 24275 24275 2.5775 0 1 9988 15025 6163 6169 12403 12403 0.014314189862375315 GEEWKRGK 8 Unmodified _GEEWKRGK_ 0 0 0 L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 495.2633056640625 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.72 1 104.33 103.83 104.83 3.6084 0 0 0 0.40604 1 24323 24323 2.5775 0 1 9989 15025 6163 6169 12404 12404 0.014314189862375315 GEEWKRGK 8 Unmodified _GEEWKRGK_ 0 0 0 L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 495.2624816894531 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.58 1 104.32 103.82 104.82 3.7417 0 0 0 0.40604 1 23882 23882 2.5775 0 1 9990 15025 6163 6169 12405 12405 0.014314189862375315 GEEWKRGK 8 Unmodified _GEEWKRGK_ 0 0 0 L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 495.2623596191406 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.6 1 104.45 103.95 104.95 3.8537 0 0 0 0.40604 1 23810 23810 2.5775 0 1 9991 15025 6163 6169 12406 12406 0.014314189862375315 GEFADPFKL 9 Unmodified _GEFADPFKL_ 0 0 0 nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 nc|ENSG00000113569|O75694-2|NUP155 nc|ENSG00000113569|O75694-2|NUP155 MULTI-MSMS UPN48_class_I_Rep_1 5 512.2609252929688 2 512.260925 1022.5073 0.3327 0.00017043 -0.053462 -2.7387E-05 0.27924 0.00014304 512.2607869021149 65.56 0.85677 69.011 68.587 69.444 3.4516 151 59 3 0 0 0 0.022868 6 14897 14818;14857;14897;14933;14977;15015 61.602 34.718 1 818640 9992 2050 6164 6170 12407;12408;12409;12410;12411;12412 12409 -0.0030563482238221695 GEFADPFKL 9 Unmodified _GEFADPFKL_ 0 0 0 nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 nc|ENSG00000113569|O75694-2|NUP155 nc|ENSG00000113569|O75694-2|NUP155 MULTI-MSMS UPN48_class_I_Rep_2 6 512.2610473632812 2 512.260925 1022.5073 0.35419 0.00018144 -0.12075 -6.1853E-05 0.23344 0.00011958 512.2607537150791 65.389 0.87296 68.869 68.449 69.322 3.4792 158 61 3 0 0 0 0.05757 6 14800 14759;14800;14842;14879;14914;14955 45.74 26.483 1 730560 9993 2050 6164 6170 12413;12414;12415;12416;12417;12418 12414 -0.0030563482238221695 GEFADPFKL 9 Unmodified _GEFADPFKL_ 0 0 0 nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155 nc|ENSG00000113569|O75694-2|NUP155 nc|ENSG00000113569|O75694-2|NUP155 MULTI-MSMS UPN48_class_I_Rep_3 7 512.2609252929688 2 512.260925 1022.5073 0.34075 0.00017455 -0.025093 -1.2854E-05 0.31566 0.0001617 512.2607880660298 65.227 0.90309 68.735 68.322 69.225 3.5077 168 60 4 0 0 0 0.053261 6 14757 14636;14677;14720;14757;14796;14840 47.594 25.848 1 683120 9994 2050 6164 6170 12419;12420;12421;12422;12423;12424 12422 -0.0030563482238221695 GEFQELMKL 9 Oxidation (M) _GEFQELM(Oxidation (M))KL_ GEFQELM(1)KL GEFQELM(51)KL 0 0 1 nc|ENSG00000136146|Q9NPJ6-2|MED4;ENSG00000136146|ENST00000258648|MED4 nc|ENSG00000136146|Q9NPJ6-2|MED4 nc|ENSG00000136146|Q9NPJ6-2|MED4 MULTI-MSMS UPN48_class_I_Rep_3 7 555.7787475585938 2 555.778625 1109.5427 0.26154 0.00014536 -0.08732 -4.8531E-05 0.17422 9.6825E-05 555.7785631743442 52.938 0.79882 56.522 56.131 56.93 3.5836 87 50 3 0 0 0 0.043808 1 10969 10969 51.488 19.371 1 289310 9995 2952 6165 6171 12425 12425 94 -0.007693403568737267 GEFQTQHSY 9 Unmodified _GEFQTQHSY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS UPN47_class_I_Rep_1 2 548.7387084960938 2 548.738345 1095.46214 -0.035824 -1.9658E-05 0.60201 0.00033034 0.56618 0.00031069 548.7387018915272 27.304 0.48499 31.07 30.899 31.384 3.7662 51 33 2 0 0 0 0.43153 3 4044 4004;4044;4086 6.2058 2.9942 1 86011 9996 1678 6166 6172 12426;12427;12428 12427 -0.08177485355554381 GEFQTQHSY 9 Unmodified _GEFQTQHSY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS UPN47_class_I_Rep_2 3 548.7379150390625 2 548.738345 1095.46214 0.027435 1.5055E-05 0.21319 0.00011699 0.24063 0.00013204 548.7384589136458 27.517 0.49346 31.016 30.74 31.233 3.4986 59 37 2 0 0 0 0.26468 1 4137 4137 16.149 6.766 1 56509 9997 1678 6166 6172 12429 12429 -0.08177485355554381 GEFQTQHSY 9 Unmodified _GEFQTQHSY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS UPN47_class_I_Rep_3 4 548.7384643554688 2 548.738345 1095.46214 -0.22987 -0.00012614 0.60242 0.00033057 0.37256 0.00020444 548.7386304537715 27.71 0.58913 31.052 30.734 31.323 3.3422 71 48 2 0 0 0 0.26468 1 4215 4215 16.149 9.4259 1 66045 9998 1678 6166 6172 12430 12430 -0.08177485355554381 GEFRAVTEL 9 Unmodified _GEFRAVTEL_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN48_class_I_Rep_2 6 511.26934814453125 2 511.269281 1020.52401 0.2224 0.00011371 0.47237 0.00024151 0.69477 0.00035521 511.26966607113013 48.065 1.0423 51.801 51.421 52.464 3.7361 132 74 3 0 0 0 0.12096 1 9552 9552 29.841 1.3537 1 252460 9999 5281 6167 6173 12431 12431 0.014568660635518427 GEFRAVTEL 9 Unmodified _GEFRAVTEL_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN48_class_I_Rep_3 7 511.269775390625 2 511.269281 1020.52401 0.20843 0.00010656 0.41545 0.0002124 0.62387 0.00031897 511.26956565094906 48.276 0.98306 51.91 51.516 52.5 3.6339 109 71 2 0 0 0 0.16799 1 9601 9601 23.79 3.3362 1 323980 10000 5281 6167 6173 12432 12432 0.014568660635518427 GEFVLFPK 8 Unmodified _GEFVLFPK_ 0 0 0 REV__L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|145|2|anti-sense REV__L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|145|2|anti-sense MSMS UPN46_class_I_Rep_3 1 468.7613220214844 2 468.763104 935.511654 NaN NaN NaN NaN NaN NaN NaN 63.79 1 63.79 63.29 64.29 0 0 0 0 0.40604 1 14334 14334 2.5775 0.27475 1 + 10001 24082 6168 6174 12433 12433 0.04131874391191559 GEGAYGKVF 9 Unmodified _GEGAYGKVF_ 0 0 0 ENSG00000105810|ENST00000424848|CDK6 ENSG00000105810|ENST00000424848|CDK6 ENSG00000105810|ENST00000424848|CDK6 MULTI-MSMS UPN47_class_I_Rep_1 2 464.2320556640625 2 464.232168 926.449782 -0.3269 -0.00015176 -0.17593 -8.167E-05 -0.50283 -0.00023343 464.2320580511923 37.638 0.5758 41.303 41.053 41.629 3.6652 65 40 2 0 0 0 0.17897 1 7188 7188 22.736 14.143 1 111530 10002 1762 6169 6175 12434 12434 -0.01638477027938734 GEGAYGKVF 9 Unmodified _GEGAYGKVF_ 0 0 0 ENSG00000105810|ENST00000424848|CDK6 ENSG00000105810|ENST00000424848|CDK6 ENSG00000105810|ENST00000424848|CDK6 MULTI-MATCH UPN47_class_I_Rep_2 3 2 464.232168 926.449782 -0.40161 -0.00018644 0.08863 4.1145E-05 -0.31298 -0.0001453 464.23218636030543 37.903 0.59943 41.291 41.09 41.689 3.3879 -0.0041089 0.00011975 NaN 22.736 75 48 2 NaN NaN NaN NaN 0 NaN NaN 0 104970 10003 1762 6169 6175 -0.01638477027938734 GEGAYGKVF 9 Unmodified _GEGAYGKVF_ 0 0 0 ENSG00000105810|ENST00000424848|CDK6 ENSG00000105810|ENST00000424848|CDK6 ENSG00000105810|ENST00000424848|CDK6 MULTI-MATCH UPN47_class_I_Rep_3 4 2 464.232168 926.449782 -0.59498 -0.00027621 -0.015899 -7.381E-06 -0.61088 -0.00028359 464.2321666259466 38.05 0.71799 41.291 41.032 41.75 3.2414 -0.0037914 2.2693E-05 NaN 22.736 81 50 2 NaN NaN NaN NaN 0 NaN NaN 0 84213 10004 1762 6169 6175 -0.01638477027938734 GEGDVVYYIR 10 Unmodified _GEGDVVYYIR_ 0 0 0 REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 585.79248046875 2 585.793121 1169.57169 0.29889 0.00017509 0.52899 0.00030988 0.82788 0.00048497 585.7926417709104 52.598 1.1019 56.157 55.752 56.854 3.5585 147 79 4 0 0 0 0.52083 1 11925 11925 9.3831 3.1773 1 1547200 + 10005 31029 6170 6176 12435 12435 -0.00631479736239271 GEGDVVYYIR 10 Unmodified _GEGDVVYYIR_ 0 0 0 REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense MSMS UPN47_class_I_Rep_1 2 585.8103637695312 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.667 1 57.195 56.695 57.695 3.5278 0 0 0 0.53105 1 12042 12042 3.2813 0 1 + 10006 31029 6170 6176 12436 12436 -0.00631479736239271 GEGDVVYYIR 10 Unmodified _GEGDVVYYIR_ 0 0 0 REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 585.7928466796875 2 585.793121 1169.57169 0.51626 0.00030242 -0.06119 -3.5845E-05 0.45507 0.00026658 585.7925786370781 52.868 1.4109 56.194 55.806 57.217 3.3266 153 99 2 0 0 0 0.54466 2 12018 12018;12065 6.2058 0 1 1108400 + 10007 31029 6170 6176 12437;12438 12437 -0.00631479736239271 GEGDVVYYIR 10 Unmodified _GEGDVVYYIR_ 0 0 0 REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense MSMS UPN47_class_I_Rep_3 4 585.79248046875 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.614 1 56.809 56.309 57.309 3.1948 0 0 0 0.53105 1 12109 12109 13.042 2.243 1 + 10008 31029 6170 6176 12439 12439 -0.00631479736239271 GEGDVVYYIR 10 Unmodified _GEGDVVYYIR_ 0 0 0 REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7931518554688 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.755 1 56.95 56.45 57.45 3.1948 0 0 0 0.53105 1 12151 12151 6.2058 0 1 + 10009 31029 6170 6176 12440 12440 -0.00631479736239271 GEGDVVYYIR 10 Unmodified _GEGDVVYYIR_ 0 0 0 REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense REV__LTR86A1_dup300|chrX:97306203-97306572:-|1.1599387061619848|0.0059970016345122|7.6|150.0|19|2|anti-sense MSMS UPN47_class_I_Rep_3 4 585.77001953125 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.947 1 57.133 56.633 57.633 3.1856 0 0 0 0.53105 1 12209 12209 6.2058 0.47393 1 + 10010 31029 6170 6176 12441 12441 -0.00631479736239271 GEGIAKERR 9 Unmodified _GEGIAKERR_ 0 0 0 REV__nc|ENSG00000155846|Q86YN6-4|PPARGC1B REV__nc|ENSG00000155846|Q86YN6-4|PPARGC1B MULTI-SECPEP UPN46_class_I_Rep_3 1 508.4408264160156 2 508.285797 1014.55704 0.2323 0.00011808 -0.56465 -0.000287 -0.33234 -0.00016892 508.28543188357844 57.556 0.042542 57.556 57.539 57.582 0 6 4 2 0 0 0 0.12034 1 12614 12614 7.2892 0 1 91399 + 10011 32021 6171 6177 12442 12442 0.050344929062816846 GEGLFGLPLSP 11 Unmodified _GEGLFGLPLSP_ 0 0 0 REV__ENST00000272193.10_1_1:204085443-204095259:+|nuORF REV__ENST00000272193.10_1_1:204085443-204095259:+|nuORF MSMS UPN48_class_I_Rep_2 6 543.7936401367188 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 62.365 1 65.839 65.339 66.339 3.4738 0 0 0 0.38417 1 13931 13931 1.1933 0.39971 1 + 10012 19465 6172 6178 12443 12443 0.03634609757477847 GEGLGMVPGL 10 Unmodified _GEGLGMVPGL_ 0 0 0 REV__L1PA5_dup10595|chr18:37111557-37117653:+|1.1049979260825962|0.0445246974299591|4.63|151.0|118|2|sense REV__L1PA5_dup10595|chr18:37111557-37117653:+|1.1049979260825962|0.0445246974299591|4.63|151.0|118|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 465.2433166503906 2 465.241678 928.468803 0.242 0.00011259 -1.1486 -0.00053439 -0.90663 -0.0004218 465.24090675683016 74.875 0.60456 78.441 78.132 78.737 3.5659 113 65 3 0 0 0 0.51565 1 17510 17510 10.074 0.72649 1 336420 + 10013 29708 6173 6179 12444 12444 0.0017073627145691717 GEGPIIQLC 9 Unmodified _GEGPIIQLC_ 0 0 0 REV__nc|ENSG00000095539|Q9NTN9|SEMA4G REV__nc|ENSG00000095539|Q9NTN9|SEMA4G MULTI-MSMS UPN48_class_I_Rep_3 7 465.24188232421875 2 465.241678 928.468803 0.242 0.00011259 -1.1486 -0.00053439 -0.90663 -0.0004218 465.24090675683016 74.875 0.60456 78.441 78.132 78.737 3.5659 113 65 3 0 0 0 0.41259 2 17506 17506;17585 7.2892 0 1 336420 + 10014 18051 6174 6180 12445;12446 12445 0.0017073627144554848 GEGPLDVRL 9 Unmodified _GEGPLDVRL_ 0 0 0 nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF nc|ENSG00000093167|Q9Y608-2|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 MULTI-MSMS UPN48_class_I_Rep_1 5 478.2635803222656 2 478.263999 954.513445 0.13792 6.5962E-05 -0.062166 -2.9732E-05 0.075752 3.623E-05 478.26391284458856 53.66 0.61865 57.174 56.82 57.438 3.5143 77 44 2 0 0 0 0.12795 1 11267 11267 28.495 6.9575 1 175940 10015 1402 6175 6181 12447 12447 0.03436883409131042 GEGPLDVRL 9 Unmodified _GEGPLDVRL_ 0 0 0 nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF nc|ENSG00000093167|Q9Y608-2|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 MULTI-MSMS UPN48_class_I_Rep_2 6 478.2635803222656 2 478.263999 954.513445 0.30023 0.00014359 -0.52785 -0.00025245 -0.22762 -0.00010886 478.2636161668594 53.494 0.68298 57.104 56.806 57.489 3.6098 73 48 2 0 0 0 0.14216 4 11263 11209;11243;11263;11284 26.268 6.509 1 152540 10016 1402 6175 6181 12448;12449;12450;12451 12450 0.03436883409131042 GEGPLDVRL 9 Unmodified _GEGPLDVRL_ 0 0 0 nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF nc|ENSG00000093167|Q9Y608-2|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 MULTI-MSMS UPN48_class_I_Rep_3 7 478.2638244628906 2 478.263999 954.513445 0.071831 3.4354E-05 -0.13139 -6.2839E-05 -0.059558 -2.8485E-05 478.2639084468852 53.612 0.51046 57.195 56.892 57.403 3.5836 67 39 2 0 0 0 0.04399 2 11167 11167;11207 51.415 17.014 1 205070 10017 1402 6175 6181 12452;12453 12452 0.03436883409131042 GEHGLIIRV 9 Unmodified _GEHGLIIRV_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MSMS UPN48_class_I_Rep_3 7 497.29461669921875 2 497.295633 992.576714 NaN NaN NaN NaN NaN NaN NaN 41.443 1 45.088 44.588 45.588 3.6458 0 0 0 0.38639 1 7486 7486 3.9444 1.6417 1 10018 1186 6176 6182 12454 12454 0.0801286891704649 GEHHYRSHED 10 Unmodified _GEHHYRSHED_ 0 0 0 L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|16|1|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|16|1|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|16|1|sense MSMS UPN47_class_I_Rep_2 3 633.7666625976562 2 633.765957 1265.51736 NaN NaN NaN NaN NaN NaN NaN 58.625 1 61.906 61.406 62.406 3.2818 0 0 0 0.53105 1 13585 13585 5.7319 0.43497 1 10019 11838 6177 6183 12455 12455 -0.10477678835104598 GEHLAKRV 8 Unmodified _GEHLAKRV_ 0 0 0 REV__nc|ENSG00000058085|Q13753-2|LAMC2 REV__nc|ENSG00000058085|Q13753-2|LAMC2 MSMS UPN47_class_I_Rep_2 3 455.2669982910156 2 455.266876 908.519199 NaN NaN NaN NaN NaN NaN NaN 30.411 1 33.893 33.393 34.393 3.4821 0 0 0 0.40738 1 5008 5008 0.79363 0 1 + 10020 17710 6178 6184 12456 12456 0.06128026711473922 GEIKVLQGF 9 Unmodified _GEIKVLQGF_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MSMS UPN47_class_I_Rep_1 2 495.7844543457031 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 56.43 1 59.887 59.387 60.387 3.4572 0 0 0 0.25702 1 12887 12887 13.042 4.4492 1 10021 892 6179 6185 12457 12457 0.05938644448622199 GEIKVLQGF 9 Unmodified _GEIKVLQGF_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MSMS UPN47_class_I_Rep_1 2 495.7846984863281 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 56.579 1 60.036 59.536 60.536 3.4572 0 0 0 0.17222 1 12933 12933 18.146 4.6385 1 10022 892 6179 6185 12458 12458 0.05938644448622199 GEIKVLQGF 9 Unmodified _GEIKVLQGF_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MSMS UPN47_class_I_Rep_1 2 495.7856750488281 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 56.733 1 60.191 59.691 60.691 3.4572 0 0 0 0.32573 1 12980 12980 9.3831 2.66 1 10023 892 6179 6185 12459 12459 0.05938644448622199 GEIKVLQGF 9 Unmodified _GEIKVLQGF_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MSMS UPN47_class_I_Rep_2 3 495.78533935546875 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 56.83 1 60.131 59.631 60.631 3.3009 0 0 0 0.10941 1 13041 13041 22.736 8.8302 1 10024 892 6179 6185 12460 12460 0.05938644448622199 GEIKVLQGF 9 Unmodified _GEIKVLQGF_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MSMS UPN47_class_I_Rep_3 4 495.7848815917969 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 56.918 1 60.09 59.59 60.59 3.1721 0 0 0 0.11827 1 13119 13119 21.537 7.6309 1 10025 892 6179 6185 12461 12461 0.05938644448622199 GEIKVLQGF 9 Unmodified _GEIKVLQGF_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MSMS UPN47_class_I_Rep_3 4 495.7853088378906 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 57.118 1 60.286 59.786 60.786 3.1681 0 0 0 0.29868 1 13177 13177 10.824 1.4765 1 10026 892 6179 6185 12462 12462 0.05938644448622199 GEIPHVLF 8 Unmodified _GEIPHVLF_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MSMS UPN46_class_I_Rep_3 1 456.0818786621094 2 456.252903 910.491253 NaN NaN NaN NaN NaN NaN NaN 59.386 1 59.386 58.886 59.886 0 0 0 0 0.40581 1 13124 13124 2.8892 0 1 + 10027 20325 6180 6186 12463 12463 0.03242703731370966 GEIYLNNFK 9 Unmodified _GEIYLNNFK_ 0 0 0 HERVK22-int_dup380|chr15:49839371-49844484:+|10.340074952128136|0.0514195401088533|7.65|151.0|33|1|sense HERVK22-int_dup380|chr15:49839371-49844484:+|10.340074952128136|0.0514195401088533|7.65|151.0|33|1|sense HERVK22-int_dup380|chr15:49839371-49844484:+|10.340074952128136|0.0514195401088533|7.65|151.0|33|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2843017578125 2 549.284931 1096.55531 0.34028 0.00018691 -0.14232 -7.8177E-05 0.19795 0.00010873 549.284841103378 39.337 0.59811 42.993 42.805 43.403 3.6557 74 53 2 0 0 0 0.41259 1 6887 6887 7.2892 1.0834 1 105550 10028 8289 6181 6187 12464 12464 0.010894390976545765 GEKEERRL 8 Unmodified _GEKEERRL_ 0 0 0 REV__ENSG00000213445|ENST00000534313|SIPA1 REV__ENSG00000213445|ENST00000534313|SIPA1 MULTI-SECPEP UPN46_class_I_Rep_3 1 508.21197509765625 2 508.777805 1015.54106 0.25561 0.00013005 0.6266 0.0003188 0.88221 0.00044885 508.777114670634 65.096 0.03376 65.096 65.076 65.11 0 5 3 2 0 0 0 0.72333 1 14698 14698 0.69038 0 1 74821 + 10029 21246 6182 6188 12465 12465 0.03390786669388035 GEKFKDTL 8 Unmodified _GEKFKDTL_ 0 0 0 REV__ENST00000413233.1_1_7:116612221-116612569:-|nuORF REV__ENST00000413233.1_1_7:116612221-116612569:-|nuORF MSMS UPN46_class_I_Rep_3 1 469.2527770996094 2 469.2531 936.491647 NaN NaN NaN NaN NaN NaN NaN 58.618 1 58.618 58.118 59.118 0 0 0 0 0.4044 1 12912 12912 4.756 0 1 + 10030 22200 6183 6189 12466 12466 0.0208607866057946 GEKRMLLF 8 Unmodified _GEKRMLLF_ 0 0 0 ENST00000336095.10_1_20:3913450-3913603:-|nuORF ENST00000336095.10_1_20:3913450-3913603:-|nuORF ENST00000336095.10_1_20:3913450-3913603:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.46832275390625 2 497.281137 992.547722 NaN NaN NaN NaN NaN NaN NaN 60.131 1 60.131 59.631 60.631 0 0 0 0 0.40364 1 13326 13326 5.7604 0.52976 1 10031 6207 6184 6190 12467 12467 0.051150082963886234 GEKSFLRYV 9 Unmodified _GEKSFLRYV_ 0 0 0 REV__L1MB4_dup2047|chr4:67528329-67529312:-|1.1344363006149338|0.0204518214548326|5.79|151.0|17|2|sense REV__L1MB4_dup2047|chr4:67528329-67529312:-|1.1344363006149338|0.0204518214548326|5.79|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.800048828125 2 549.800749 1097.58694 0.45522 0.00025028 -0.041836 -2.3001E-05 0.41338 0.00022728 549.8006871351661 49.617 0.50509 52.844 52.579 53.084 3.2262 44 28 2 0 0 0 0.43153 1 10871 10871 6.2058 0.47393 1 92001 + 10032 25947 6185 6191 12468 12468 0.04205431851596586 GELLEPWWRRL 11 Unmodified _GELLEPWWRRL_ 0 0 0 AluSx_dup45783|chr7:101954890-101955178:+|1.3193530462621648|0.0112098379306191|6.88|151.0|11|3|sense AluSx_dup45783|chr7:101954890-101955178:+|1.3193530462621648|0.0112098379306191|6.88|151.0|11|3|sense AluSx_dup45783|chr7:101954890-101955178:+|1.3193530462621648|0.0112098379306191|6.88|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 485.68353271484375 3 485.601616 1453.78302 NaN NaN NaN NaN NaN NaN NaN 47.489 1 47.489 46.989 47.989 0 0 0 0 0.38417 1 9824 9824 0.45452 0.29519 1 10033 284 6186 6192 12469 12469 0.07427817025472905 GELLRIGLPSV 11 Unmodified _GELLRIGLPSV_ 0 0 0 REV__ENSG00000071894|ENST00000616140|CPSF1 REV__ENSG00000071894|ENST00000616140|CPSF1 MSMS UPN47_class_I_Rep_2 3 577.351806640625 2 577.350606 1152.68666 NaN NaN NaN NaN NaN NaN NaN 107.72 1 111.26 110.76 111.76 3.5345 0 0 0 0.37149 1 26070 26070 7.609 1.4032 1 + 10034 17816 6187 6193 12470 12470 0.11642249465558052 GELLRRVK 8 Unmodified _GELLRRVK_ 0 0 0 HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|178|1|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|178|1|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|178|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8119201660156 2 485.811451 969.608348 0.11413 5.5447E-05 2.7448 0.0013335 2.8589 0.0013889 485.8116455042829 65.243 0.57674 68.599 68.311 68.888 3.3557 48 37 2 0 0 0 0.82752 1 15561 15561 5.2307 0 1 161730 10035 8205 6188 6194 12471 12471 0.12232861670986495 GELLVPRRRR 10 Unmodified _GELLVPRRRR_ 0 0 0 AluSx_dup79096|chr12:123427549-123427834:-|2.076483771169484|0.0286732449617549|6.18|151.0|13|3|sense;AluSx1_dup75721|chr12:68635469-68635754:-|2.2437977656098664|0.0339110888006236|6.05|151.0|9|3|sense AluSx_dup79096|chr12:123427549-123427834:-|2.076483771169484|0.0286732449617549|6.18|151.0|13|3|sense AluSx_dup79096|chr12:123427549-123427834:-|2.076483771169484|0.0286732449617549|6.18|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 626.3939819335938 2 626.391462 1250.76837 NaN NaN NaN NaN NaN NaN NaN 107.72 1 107.72 107.22 108.22 0 0 0 0 0.53105 1 26278 26278 6.7232 0.99131 1 10036 298 6189 6195 12472 12472 0.1530178966800122 GELNEQKPRYS 11 Unmodified _GELNEQKPRYS_ 0 0 0 REV__ENSG00000111046|ENST00000228641|MYF6 REV__ENSG00000111046|ENST00000228641|MYF6 MULTI-SECPEP UPN47_class_I_Rep_3 4 441.29736328125 3 440.889603 1319.64698 -0.95198 -0.00041972 1.0615 0.00046802 0.10956 4.8302E-05 440.89011616067654 31.286 0.065475 34.586 34.556 34.622 3.2991 5 4 2 0 0 0 22.551 1 5309 5309 2.4348 0 1 26862 + 10037 18445 6190 6196 12473 12473 -5.922275795455789E-05 GELQIHVSAEK 11 Unmodified _GELQIHVSAEK_ 0 0 0 REV__ENSG00000115232|ENST00000397033|ITGA4 REV__ENSG00000115232|ENST00000397033|ITGA4 MSMS UPN48_class_I_Rep_2 6 404.22039794921875 3 404.21906 1209.63535 NaN NaN NaN NaN NaN NaN NaN 30.066 1 33.701 33.201 34.201 3.6351 0 0 0 0.38417 1 4348 4348 1.2148 0 1 + 10038 18548 6191 6197 12474 12474 0.0389188070084856 GELQYERLQ 9 Unmodified _GELQYERLQ_ 0 0 0 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS UPN47_class_I_Rep_2 3 568.290771484375 2 568.290745 1134.56694 0.13306 7.5619E-05 -0.29099 -0.00016537 -0.15793 -8.9749E-05 568.2906592393135 43.406 0.75481 46.764 46.443 47.198 3.358 59 46 2 0 0 0 0.49026 1 8939 8939 1.6526 0 1 74100 + 10039 18136 6192 6198 12475 12475 0.005036361209931783 GELTGEVRM 9 Unmodified _GELTGEVRM_ 0 0 0 nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC nc|ENSG00000128591|Q14315-2|FLNC nc|ENSG00000128591|Q14315-2|FLNC MULTI-MSMS UPN48_class_I_Rep_1 5 496.2467956542969 2 496.247492 990.48043 0.20958 0.000104 -0.39116 -0.00019411 -0.18159 -9.0111E-05 496.24726730727053 38.2 0.46282 41.705 41.49 41.953 3.5052 57 38 2 0 0 0 0.11648 2 6623 6575;6623 30.703 0 1 88998 10040 2595 6193 6199 12476;12477 12477 -0.015190667052138451 GELTGEVRM 9 Unmodified _GELTGEVRM_ 0 0 0 nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC nc|ENSG00000128591|Q14315-2|FLNC nc|ENSG00000128591|Q14315-2|FLNC MULTI-MSMS UPN48_class_I_Rep_2 6 496.2469482421875 2 496.247492 990.48043 0.24158 0.00011988 -0.2097 -0.00010406 0.031882 1.5821E-05 496.247285547999 37.947 0.53686 41.664 41.405 41.941 3.7164 72 49 2 0 0 0 0.22932 2 6549 6516;6549 18.373 0 1 118260 10041 2595 6193 6199 12478;12479 12479 -0.015190667052138451 GELTGEVRM 9 Unmodified _GELTGEVRM_ 0 0 0 nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC nc|ENSG00000128591|Q14315-2|FLNC nc|ENSG00000128591|Q14315-2|FLNC MULTI-MSMS UPN48_class_I_Rep_3 7 496.2469787597656 2 496.247492 990.48043 0.16092 7.9855E-05 -0.33753 -0.0001675 -0.17662 -8.7645E-05 496.2473073175212 37.978 0.5086 41.637 41.4 41.908 3.6595 66 50 2 0 0 0 0.15661 2 6481 6439;6481 24.882 0 1 97895 10042 2595 6193 6199 12480;12481 12481 -0.015190667052138451 GELTMDKTV 9 Unmodified _GELTMDKTV_ 0 0 0 REV__ENST00000528224.1_1_11:66616372-66617354:-|nuORF REV__ENST00000528224.1_1_11:66616372-66617354:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 496.77972412109375 2 497.2497 992.484847 0.23863 0.00011866 -0.081127 -4.034E-05 0.1575 7.8317E-05 497.2495069200798 52.931 0.41438 52.931 52.708 53.123 0 56 42 2 0 0 0 0.11309 1 11388 11388 5.7319 0 1 226800 + 10043 20492 6194 6200 12482 12482 -0.011696022823230123 GEMVKPKI 8 Unmodified _GEMVKPKI_ 0 0 0 REV__ENST00000568329.5_1_15:75091021-75093212:+|nuORF REV__ENST00000568329.5_1_15:75091021-75093212:+|nuORF MSMS UPN48_class_I_Rep_2 6 451.2621765136719 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 115.27 1 118.94 118.44 119.44 3.6616 0 0 0 0.40746 1 27587 27587 0.69038 0 1 + 10044 18236 6195 6201 12483 12483 0.05603917030782668 GENAHDMY 8 Unmodified _GENAHDMY_ 0 0 0 REV__nc|ENSG00000142731|O00444-3|PLK4 REV__nc|ENSG00000142731|O00444-3|PLK4 MSMS UPN46_class_I_Rep_3 1 468.6781311035156 2 468.679442 935.344331 NaN NaN NaN NaN NaN NaN NaN 55.327 1 55.327 54.827 55.827 0 0 0 0 0.40364 1 12025 12025 5.7604 0 1 + 10045 19415 6196 6202 12484 12484 -0.1259276121588755 GENDRGVSF 9 Unmodified _GENDRGVSF_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000462832.5_1_2:29006774-29038903:+|nuORF ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN47_class_I_Rep_1 2 490.7251281738281 2 490.725238 979.435923 -0.29773 -0.0001461 0.13316 6.5345E-05 -0.16456 -8.0756E-05 490.72529514208804 30.038 0.67545 33.783 33.483 34.158 3.7449 93 47 3 0 0 0 0.13244 3 4867 4828;4867;4912 27.629 27.629 1 184900 10046 5597;4579 6197 6203 12485;12486;12487 12486 -0.054617545270275514 GENDRGVSF 9 Unmodified _GENDRGVSF_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000462832.5_1_2:29006774-29038903:+|nuORF ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN47_class_I_Rep_2 3 490.7252197265625 2 490.725238 979.435923 -0.10505 -5.1552E-05 0.073768 3.62E-05 -0.031285 -1.5352E-05 490.7252079095103 30.173 0.7144 33.655 33.359 34.074 3.4821 131 57 3 0 0 0 0.2924 2 4959 4877;4959 14.405 14.405 1 191570 10047 5597;4579 6197 6203 12488;12489 12489 -0.054617545270275514 GENDRGVSF 9 Unmodified _GENDRGVSF_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000462832.5_1_2:29006774-29038903:+|nuORF ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN47_class_I_Rep_3 4 490.7253112792969 2 490.725238 979.435923 -0.4243 -0.00020822 0.49955 0.00024514 0.075249 3.6927E-05 490.72541962706805 30.38 0.78139 33.692 33.362 34.143 3.3116 103 62 2 0 0 0 0.073198 3 5048 4961;5001;5048 40.239 21.537 1 194690 10048 5597;4579 6197 6203 12490;12491;12492 12492 -0.054617545270275514 GENEYFRVF 9 Unmodified _GENEYFRVF_ 0 0 0 ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MSMS UPN47_class_I_Rep_1 2 580.7720947265625 2 580.772188 1159.52982 0.40625 0.00023594 -0.090442 -5.2526E-05 0.3158 0.00018341 580.772171834115 59.841 0.51017 63.239 63.098 63.609 3.3982 56 33 2 0 0 0 0.17979 2 13954 13954;13997 22.658 17.427 1 90390 10049 1937 6198 6204 12493;12494 12493 -0.04356035424757465 GENEYFRVF 9 Unmodified _GENEYFRVF_ 0 0 0 ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MSMS UPN47_class_I_Rep_2 3 580.7789916992188 2 580.772188 1159.52982 0.49345 0.00028658 0.16834 9.777E-05 0.66179 0.00038435 580.7719492727239 60.062 0.10521 63.335 63.283 63.388 3.2731 7 5 2 0 0 0 0.43982 1 14019 14019 5.7319 1.4026 1 46756 10050 1937 6198 6204 12495 12495 -0.04356035424757465 GENEYFRVF 9 Unmodified _GENEYFRVF_ 0 0 0 ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MSMS UPN47_class_I_Rep_2 3 580.7720336914062 2 580.772188 1159.52982 0.48868 0.00028381 -0.23313 -0.00013539 0.25555 0.00014842 581.2736300359409 60.261 0.34362 63.534 63.388 63.732 3.2731 35 20 2 0 0 0 0.2924 2 14081 14054;14081 14.405 9.1747 1 85796 10051 1937 6198 6204 12496;12497 12497 -0.04356035424757465 GENEYFRVF 9 Unmodified _GENEYFRVF_ 0 0 0 ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MSMS UPN47_class_I_Rep_3 4 581.273193359375 2 580.772188 1159.52982 0.36942 0.00021455 -0.49576 -0.00028792 -0.12634 -7.3376E-05 580.7719201595447 60.303 0.51957 63.468 63.19 63.709 3.1651 43 31 2 0 0 0 0.33908 4 14183 14116;14153;14183;14202 11.495 6.5977 1 69842 10052 1937 6198 6204 12498;12499;12500;12501 12500 -0.04356035424757465 GENFTFQIY 9 Unmodified _GENFTFQIY_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 559.7618408203125 2 559.761289 1117.50803 0.39537 0.00022132 0.7869 0.00044047 1.1823 0.00066179 559.7616453348952 74.68 0.50632 78.074 77.824 78.331 3.3937 74 44 2 0 0 0 0.12096 4 18394 18350;18394;18433;18460 29.841 10.402 1 118260 10053 2599 6199 6205 12502;12503;12504;12505 12503 -0.04602840173311051 GENFTFQIY 9 Unmodified _GENFTFQIY_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 559.7620849609375 2 559.761289 1117.50803 0.45248 0.00025328 1.7507 0.00097997 2.2032 0.0012332 559.7620518114421 74.838 0.36617 78.15 77.977 78.343 3.3127 58 42 2 0 0 0 0.025281 3 18450 18416;18450;18485 60.074 16.216 1 124910 10054 2599 6199 6205 12506;12507;12508 12507 -0.04602840173311051 GENFTFQIY 9 Unmodified _GENFTFQIY_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MSMS UPN47_class_I_Rep_2 3 559.7618408203125 2 559.761289 1117.50803 NaN NaN NaN NaN NaN NaN NaN 74.596 1 77.909 77.409 78.409 3.3127 0 0 0 0.38916 1 18387 18387 3.2813 0 1 10055 2599 6199 6205 12509 12509 -0.04602840173311051 GENFTFQIY 9 Unmodified _GENFTFQIY_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 559.7634887695312 2 559.761289 1117.50803 0.45586 0.00025517 1.7611 0.00098582 2.217 0.001241 559.7618365176976 74.761 0.18244 78.008 77.885 78.067 3.2464 25 19 2 0 0 0 0.12096 3 18530 18504;18514;18530 29.841 7.1043 1 64349 10056 2599 6199 6205 12510;12511;12512 12512 -0.04602840173311051 GENFTFQIY 9 Unmodified _GENFTFQIY_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 559.76220703125 2 559.761289 1117.50803 0.45636 0.00025545 1.3414 0.00075087 1.7978 0.0010063 559.7619097128974 74.97 0.37675 78.217 78.043 78.42 3.2464 66 40 2 0 0 0 0.088679 3 18553 18553;18586;18627 36.506 8.5253 1 119210 10057 2599 6199 6205 12513;12514;12515 12513 -0.04602840173311051 GENPDLLVNLD 11 Unmodified _GENPDLLVNLD_ 0 0 0 ENSG00000164506.14,STXBP5,chr6,+,I18.1,147325085,147327124|35|7.85|3|intron;ENSG00000164506.14,STXBP5,chr6,+,I18.1,147325085,147327124|35|7.85|2|intron;ENSG00000164506.14,STXBP5,chr6,+,I21.1,147334223,147339178|35|8.73|6|intron;ENSG00000164506.14,STXBP5,chr6,+,I18.1,147325085,147327124|35|7.85|1|intron ENSG00000164506.14,STXBP5,chr6,+,I18.1,147325085,147327124|35|7.85|3|intron ENSG00000164506.14,STXBP5,chr6,+,I18.1,147325085,147327124|35|7.85|3|intron MSMS UPN47_class_I_Rep_2 3 599.7985229492188 2 599.801143 1197.58773 NaN NaN NaN NaN NaN NaN NaN 61.855 1 65.114 64.614 65.614 3.2594 0 0 0 0.38417 1 14569 14569 2.086 0.026257 1 10058 4115 6200 6206 12516 12516 -0.003158182899824169 GENQNPIIY 9 Unmodified _GENQNPIIY_ 0 0 0 L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|33|2|sense L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|33|2|sense L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.760498046875 2 524.258914 1046.50327 -0.24747 -0.00012974 0.96697 0.00050694 0.7195 0.00037721 524.2589379968559 43.307 0.63947 46.665 46.402 47.041 3.358 80 42 3 0 0 0 0.26948 1 8960 8960 15.847 1.2655 1 93911 10059 11660 6201 6207 12517 12517 -0.018117243160759244 GENSAVLHY 9 Unmodified _GENSAVLHY_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MULTI-MSMS UPN47_class_I_Rep_1 2 495.2373962402344 2 495.237981 988.461409 -0.27309 -0.00013525 -0.77201 -0.00038233 -1.0451 -0.00051758 495.23760817364473 34.132 0.43435 37.818 37.608 38.042 3.6859 52 32 2 0 0 0 0.006828 5 6095 6062;6087;6095;6137;6167 72.968 34.994 1 75763 10060 2458 6202 6208 12518;12519;12520;12521;12522 12520 -0.03328280004609496 GENSAVLHY 9 Unmodified _GENSAVLHY_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MULTI-MSMS UPN47_class_I_Rep_2 3 495.23748779296875 2 495.237981 988.461409 -0.13624 -6.7471E-05 -0.88918 -0.00044036 -1.0254 -0.00050783 495.2374311538405 34.334 0.56244 37.759 37.517 38.079 3.4253 53 40 2 0 0 0 0.097406 3 6229 6183;6229;6245 34.402 20.444 1 74182 10061 2458 6202 6208 12523;12524;12525 12524 -0.03328280004609496 GENSAVLHY 9 Unmodified _GENSAVLHY_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MULTI-MSMS UPN47_class_I_Rep_3 4 495.73846435546875 2 495.237981 988.461409 -0.3433 -0.00017002 -1.0459 -0.00051799 -1.3892 -0.000688 495.23745778659816 34.59 0.48064 37.854 37.57 38.05 3.2639 59 39 2 0 0 0 0.013215 4 6319 6277;6289;6319;6334 67.838 29.864 1 89320 10062 2458 6202 6208 12526;12527;12528;12529 12528 -0.03328280004609496 GENSGIGKLF 10 Unmodified _GENSGIGKLF_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MSMS UPN47_class_I_Rep_1 2 511.2691955566406 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 49.775 1 53.435 52.935 53.935 3.6592 0 0 0 0.53105 1 10857 10857 8.7454 1.4562 1 10063 2621 6203 6209 12530 12530 0.014568660635859487 GENSGIGKLF 10 Unmodified _GENSGIGKLF_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS UPN47_class_I_Rep_2 3 511.2696838378906 2 511.269281 1020.52401 0.11407 5.8319E-05 3.9247 0.0020066 4.0387 0.0020649 511.26997293965815 50.039 0.6012 53.382 53.041 53.642 3.3431 63 33 3 0 0 0 0.51021 1 10910 10910 10.8 2.0541 1 86649 10064 2621 6203 6209 12531 12531 0.014568660635859487 GENVIISHF 9 Unmodified _GENVIISHF_ 0 0 0 ENST00000525250.5_1_11:821680-823850:+|nuORF;ENSG00000177666|ENST00000336615|PNPLA2 ENST00000525250.5_1_11:821680-823850:+|nuORF ENST00000525250.5_1_11:821680-823850:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 508.2638854980469 2 508.263999 1014.51345 0.34942 0.0001776 0.18664 9.4864E-05 0.53607 0.00027246 508.263999793022 51.615 0.84641 54.832 54.53 55.377 3.2163 65 45 2 0 0 0 0.10225 1 11502 11502 33.445 10.709 1 105410 10065 4801 6204 6210 12532 12532 0.006768834091417375 GEPHFHLA 8 Unmodified _GEPHFHLA_ 0 0 0 REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 454.2239990234375 2 454.224677 906.434801 -0.51157 -0.00023237 0.27466 0.00012476 -0.23691 -0.00010761 454.2247134778293 31.725 0.86082 35.195 34.809 35.67 3.4691 156 66 3 0 0 0 0.82752 1 5307 5307 0.79363 0 1 250730 + 10066 23017 6205 6211 12533 12533 -0.022159241052804646 GEPKQGRALP 10 Unmodified _GEPKQGRALP_ 0 0 0 L1P3_dup2767|chr13:19652133-19654196:+|1.4245490640814402|0.2573734263599609|2.47|151.0|18|2|sense L1P3_dup2767|chr13:19652133-19654196:+|1.4245490640814402|0.2573734263599609|2.47|151.0|18|2|sense L1P3_dup2767|chr13:19652133-19654196:+|1.4245490640814402|0.2573734263599609|2.47|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 526.7970581054688 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 19.731 1 23.381 22.881 23.881 3.6497 0 0 0 0.53105 1 1560 1560 1.3295 0.25807 1 10067 13540 6206 6212 12534 12534 0.05371663566097595 GEPLKLNLKNK 11 Unmodified _GEPLKLNLKNK_ 0 0 0 REV__L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|51|3|sense REV__L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|51|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 627.3837890625 2 627.382437 1252.75032 0.42852 0.00026885 0.23716 0.00014879 0.66568 0.00041764 627.8840147051917 104.41 0.43399 108.03 107.93 108.36 3.6247 167 62 3 0 0 0 0.59712 1 25165 25165 5.2969 0.39987 1 53198000 + 10068 24606 6207 6213 12535 12535 0.13405609902633842 GEPLTDLHSHC 11 Unmodified _GEPLTDLHSHC_ 0 0 0 ENSG00000135355|ENST00000369352|GJA10 ENSG00000135355|ENST00000369352|GJA10 ENSG00000135355|ENST00000369352|GJA10 MSMS UPN48_class_I_Rep_1 5 604.7725219726562 2 604.771862 1207.52917 NaN NaN NaN NaN NaN NaN NaN 25.045 1 28.611 28.111 29.111 3.5667 0 0 0 0.38417 1 2856 2856 1.1933 0.59184 1 10069 2902 6208 6214 12536 12536 -0.06629198136124614 GEPPMKRR 8 Unmodified _GEPPMKRR_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MSMS UPN46_class_I_Rep_3 1 486.01226806640625 2 485.766186 969.517819 NaN NaN NaN NaN NaN NaN NaN 63.223 1 63.223 62.723 63.723 0 0 0 0 0.40625 1 14185 14185 2.3027 1.5091 1 10070 4516 6209 6215 12537 12537 0.03184069351073049 GEPRFISVGY 10 Unmodified _GEPRFISVGY_ 0 0 0 ENST00000484378.1_1_6:31239370-31239848:-|nuORF;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF ENST00000484378.1_1_6:31239370-31239848:-|nuORF;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000234745|ENST00000412585|HLA-B ENSG00000204592|ENST00000376630|HLA-E MSMS UPN46_class_I_Rep_3 1 562.790771484375 2 562.790381 1123.56621 NaN NaN NaN NaN NaN NaN NaN 59.127 1 59.127 58.627 59.627 0 0 0 0 0.53105 1 13052 13052 38.615 13.624 1 10071 5530;5687;5528 6210 6216 12538 12538 0.009368414719574503 GEPRFISVGY 10 Unmodified _GEPRFISVGY_ 0 0 0 ENST00000484378.1_1_6:31239370-31239848:-|nuORF;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF ENST00000484378.1_1_6:31239370-31239848:-|nuORF;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000234745|ENST00000412585|HLA-B ENSG00000204592|ENST00000376630|HLA-E MSMS UPN46_class_I_Rep_3 1 562.7908935546875 2 562.790381 1123.56621 NaN NaN NaN NaN NaN NaN NaN 59.287 1 59.287 58.787 59.787 0 0 0 0 0.53105 1 13098 13098 17.443 3.0373 1 10072 5530;5687;5528 6210 6216 12539 12539 0.009368414719574503 GEQELFVQF 9 Unmodified _GEQELFVQF_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS UPN47_class_I_Rep_1 2 548.769287109375 2 548.769114 1095.52368 0.42849 0.00023514 0.018991 1.0422E-05 0.44749 0.00024557 548.7690451431605 75.634 0.76289 79.037 78.752 79.515 3.4034 137 73 3 0 0 0 0.12795 4 18658 18621;18658;18693;18728 28.495 11.382 1 227170 10073 5587 6211 6217 12540;12541;12542;12543 12541 -0.02026553656287433 GEQELFVQF 9 Unmodified _GEQELFVQF_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS UPN47_class_I_Rep_2 3 548.7691650390625 2 548.769114 1095.52368 0.44308 0.00024315 0.1054 5.7841E-05 0.54848 0.00030099 548.7690735693187 75.799 0.68555 79.12 78.821 79.506 3.3216 160 68 3 0 0 0 0.079935 5 18707 18671;18707;18747;18785;18829 38.615 20.468 1 315650 10074 5587 6211 6217 12544;12545;12546;12547;12548 12545 -0.02026553656287433 GEQELFVQF 9 Unmodified _GEQELFVQF_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS UPN47_class_I_Rep_3 4 548.7691650390625 2 548.769114 1095.52368 0.45114 0.00024757 0.062777 3.445E-05 0.51391 0.00028202 548.7690687302539 75.836 0.95564 79.093 78.735 79.691 3.2573 178 89 3 0 0 0 0.17979 5 18778 18768;18778;18818;18884;18922 22.658 13.615 1 250810 10075 5587 6211 6217 12549;12550;12551;12552;12553 12550 -0.02026553656287433 GEQKLLQEA 9 Unmodified _GEQKLLQEA_ 0 0 0 REV__ENSG00000010671|ENST00000308731|BTK REV__ENSG00000010671|ENST00000308731|BTK MSMS UPN46_class_I_Rep_3 1 508.69049072265625 2 508.274564 1014.53457 NaN NaN NaN NaN NaN NaN NaN 59.855 1 59.855 59.355 60.355 0 0 0 0 0.38639 1 13253 13253 3.9444 0 1 + 10076 17573 6212 6218 12554 12554 0.027888487179893673 GEQLNEIRF 9 Unmodified _GEQLNEIRF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN47_class_I_Rep_1 2 553.2990112304688 2 553.285463 1104.55637 NaN NaN NaN NaN NaN NaN NaN 61.722 1 65.091 64.591 65.591 3.3681 0 0 0 0.37891 1 14491 14491 5.7319 0.83484 1 + 10077 19771 6213 6219 12555 12555 0.008276534665810686 GERAGKHWG 9 Unmodified _GERAGKHWG_ 0 0 0 ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;ENSG00000089057|ENST00000338244|SLC23A2 ENST00000496331.1_1_20:4854564-4866632:-|nuORF ENST00000496331.1_1_20:4854564-4866632:-|nuORF MSMS UPN48_class_I_Rep_1 5 499.25213623046875 2 499.251757 996.488962 NaN NaN NaN NaN NaN NaN NaN 106.87 1 110.5 110 111 3.6299 0 0 0 0.39518 1 25743 25743 1.8442 0 1 10078 7099 6214 6220 12556 12556 -0.009423319537290809 GERGVQGPPGP 11 Unmodified _GERGVQGPPGP_ 0 0 0 ENSG00000108821|ENST00000225964|COL1A1 ENSG00000108821|ENST00000225964|COL1A1 ENSG00000108821|ENST00000225964|COL1A1 MULTI-MSMS UPN47_class_I_Rep_2 3 525.76904296875 2 525.76998 1049.52541 -0.28707 -0.00015093 0.55313 0.00029082 0.26606 0.00013989 525.7698963324315 27.146 0.53942 30.645 30.413 30.953 3.4986 97 47 3 0 0 0 0.50573 1 4039 4039 7.609 0.88579 1 88815 10079 1880 6215 6221 12557 12557 0.0026250015232562873 GERLLKAR 8 Unmodified _GERLLKAR_ 0 0 0 REV__nc|ENSG00000269565|Q8NGA4|GPR32P1 REV__nc|ENSG00000269565|Q8NGA4|GPR32P1 MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 27.318 1 30.817 30.317 31.317 3.4986 0 0 0 0.40738 1 4083 4083 0.79363 0 1 + 10080 19405 6216 6222 12558 12558 0.1039228863688777 GERLLRPR 8 Unmodified _GERLLRPR_ 0 0 0 REV__ENSG00000152785|ENST00000282701|BMP3 REV__ENSG00000152785|ENST00000282701|BMP3 MSMS UPN48_class_I_Rep_2 6 498.7639465332031 2 498.8067 995.598846 NaN NaN NaN NaN NaN NaN NaN 18.933 1 22.584 22.084 23.084 3.6509 0 0 0 0.40738 1 1353 1353 0.79363 0 1 + 10081 19693 6217 6223 12559 12559 0.10087093385459411 GERRAVVKYP 10 Unmodified _GERRAVVKYP_ 0 0 0 REV__ENST00000459934.5_1_1:24122441-24123094:-|nuORF REV__ENST00000459934.5_1_1:24122441-24123094:-|nuORF MSMS UPN46_class_I_Rep_3 1 587.836669921875 2 587.838197 1173.66184 NaN NaN NaN NaN NaN NaN NaN 67.349 1 67.349 66.849 67.849 0 0 0 0 0.53105 1 15328 15328 1.1933 0.50296 1 + 10082 18631 6218 6224 12560 12560 0.08195614382839267 GERRRRRGM 9 Unmodified _GERRRRRGM_ 0 0 0 ENST00000264025.7_1_11:119599464-119599728:-|nuORF ENST00000264025.7_1_11:119599464-119599728:-|nuORF ENST00000264025.7_1_11:119599464-119599728:-|nuORF MSMS UPN47_class_I_Rep_1 2 587.3273315429688 2 587.328339 1172.64212 NaN NaN NaN NaN NaN NaN NaN 62.44 1 65.808 65.308 66.308 3.3681 0 0 0 0.39518 1 14710 14710 1.8442 0.36234 1 10083 5987 6219 6225 12561 12561 0.06270959891094208 GESLRFFCY 9 Unmodified _GESLRFFCY_ 0 0 0 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MSMS UPN47_class_I_Rep_2 3 560.7980346679688 2 561.257859 1120.50117 NaN NaN NaN NaN NaN NaN NaN 72.097 1 75.387 74.887 75.887 3.2899 0 0 0 0.39598 1 17655 17655 1.6526 0.17072 1 10084 4698 6220 6226 12562 12562 -0.05426476325533258 GESLRYAEY 9 Unmodified _GESLRYAEY_ 0 0 0 ENSG00000120675|ENST00000379221|DNAJC15;ENST00000474320.1_1_13:43597726-43652825:+|nuORF ENSG00000120675|ENST00000379221|DNAJC15 ENSG00000120675|ENST00000379221|DNAJC15 MULTI-MSMS UPN47_class_I_Rep_3 4 544.2559204101562 2 544.256371 1086.49819 -0.078369 -4.2653E-05 0.09315 5.0697E-05 0.01478 8.0443E-06 544.2563829040791 38.014 0.91443 41.255 40.916 41.831 3.2414 126 67 3 0 0 0 0.12096 2 7325 7299;7325 29.841 5.82 1 158490 10085 2332 6221 6227 12563;12564 12564 -0.04160028178716857 GESMFSFVR 9 Unmodified _GESMFSFVR_ 0 0 0 L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|83|2|anti-sense L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|83|2|anti-sense L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.7990112304688 2 530.250034 1058.48552 0.31045 0.00016462 -0.22914 -0.0001215 0.08131 4.3115E-05 530.2499382728424 48.778 0.91523 52.301 51.751 52.666 3.5239 130 64 3 0 0 0 0.49187 1 9854 9854 1.4819 0.68827 1 279750 10086 11205 6222 6228 12565 12565 -0.04138762842603683 GESSFTYRAY 10 Unmodified _GESSFTYRAY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS UPN47_class_I_Rep_1 2 590.7669067382812 2 590.767103 1179.51965 -0.021057 -1.244E-05 0.89355 0.00052788 0.87249 0.00051544 591.2691788524535 40.095 0.71508 43.761 43.485 44.2 3.6668 119 51 3 0 0 0 0.22807 5 7910 7868;7874;7910;7957;8000 40.725 30.651 1 168860 10087 3133 6223 6229 12566;12567;12568;12569;12570 12568 -0.06292643150004551 GESSFTYRAY 10 Unmodified _GESSFTYRAY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS UPN47_class_I_Rep_2 3 590.7671508789062 2 590.767103 1179.51965 0.045001 2.6585E-05 0.60808 0.00035924 0.65308 0.00038582 591.2691187938723 40.493 0.52915 43.864 43.525 44.055 3.3712 86 34 3 0 0 0 0.2823 3 8067 8017;8067;8115 35.612 26.265 1 154240 10088 3133 6223 6229 12571;12572;12573 12572 -0.06292643150004551 GESSFTYRAY 10 Unmodified _GESSFTYRAY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS UPN47_class_I_Rep_3 4 590.76708984375 2 590.767103 1179.51965 -0.0079937 -4.7224E-06 0.59344 0.00035059 0.58545 0.00034586 591.2689259428163 40.597 0.65664 43.834 43.525 44.182 3.2372 95 41 3 0 0 0 0.22807 4 8141 8090;8141;8182;8196 40.725 29.23 1 130270 10089 3133 6223 6229 12574;12575;12576;12577 12575 -0.06292643150004551 GESSLIKQL 9 Unmodified _GESSLIKQL_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS UPN47_class_I_Rep_1 2 487.77947998046875 2 487.779482 973.544411 -0.16936 -8.261E-05 -0.015997 -7.803E-06 -0.18536 -9.0413E-05 487.77942869955507 44.045 0.50267 47.74 47.507 48.01 3.6951 53 30 2 0 0 0 0.23293 1 9137 9137 18.146 2.2992 1 98583 10090 5269 6224 6230 12578 12578 0.056580367233777906 GESSLIKQL 9 Unmodified _GESSLIKQL_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS UPN47_class_I_Rep_2 3 487.779541015625 2 487.779482 973.544411 -0.0050883 -2.482E-06 -0.14687 -7.1639E-05 -0.15196 -7.4121E-05 487.7793317702106 44.399 0.49155 47.755 47.539 48.03 3.3556 50 34 2 0 0 0 0.10568 1 9278 9278 32.786 5.1569 1 88325 10091 5269 6224 6230 12579 12579 0.056580367233777906 GESSLIKQL 9 Unmodified _GESSLIKQL_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS UPN47_class_I_Rep_3 4 487.7796325683594 2 487.779482 973.544411 -0.077814 -3.7956E-05 0.06337 3.0911E-05 -0.014444 -7.0457E-06 487.77945755809327 44.615 0.61749 47.859 47.549 48.166 3.2441 52 36 2 0 0 0 0.32682 1 9317 9317 12.241 0 1 96580 10092 5269 6224 6230 12580 12580 0.056580367233777906 GESTFFVEL 9 Unmodified _GESTFFVEL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS UPN48_class_I_Rep_2 6 514.7504272460938 2 514.75039 1027.48623 0.33378 0.00017181 0.31774 0.00016356 0.65151 0.00033537 514.7505043095169 79.587 0.081451 83.22 83.2 83.281 3.6331 10 9 2 0 0 0 0.16559 1 18915 18915 24.021 9.1823 1 57233 10093 2159 6225 6231 12581 12581 -0.02641644921891384 GESTFFVEL 9 Unmodified _GESTFFVEL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MSMS UPN48_class_I_Rep_3 7 514.7505493164062 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 79.469 1 83.111 82.611 83.611 3.6423 0 0 0 0.10315 1 18842 18842 24.021 8.1734 1 10094 2159 6225 6231 12582 12582 -0.02641644921891384 GESTFFVEL 9 Unmodified _GESTFFVEL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MSMS UPN48_class_I_Rep_3 7 514.7506713867188 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 79.663 1 83.305 82.805 83.805 3.6423 0 0 0 0.37476 1 18892 18892 6.7232 0.96273 1 10095 2159 6225 6231 12583 12583 -0.02641644921891384 GESTFQVVLPS 11 Unmodified _GESTFQVVLPS_ 0 0 0 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 MSMS UPN48_class_I_Rep_3 7 582.4227294921875 2 582.300778 1162.587 NaN NaN NaN NaN NaN NaN NaN 92.392 1 96.27 95.77 96.77 3.8782 0 0 0 0.38417 1 21904 21904 1.1933 0 1 + 10096 18652 6226 6232 12584 12584 0.012213870609684818 GESVLKLTF 9 Unmodified _GESVLKLTF_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.284423828125 2 497.2844 992.554247 0.17798 8.8504E-05 0.014145 7.0343E-06 0.19212 9.5539E-05 497.28435085360496 61.863 1.175 65.231 64.797 65.972 3.3681 195 81 4 0 0 0 0.0070648 5 14556 14478;14518;14556;14596;14640 107.1 44.527 1 604540 10097 1765 6227 6233 12585;12586;12587;12588;12589 12587 0.057672247287428036 GESVLKLTF 9 Unmodified _GESVLKLTF_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_2 3 497.28436279296875 2 497.2844 992.554247 0.24671 0.00012268 0.10891 5.4158E-05 0.35561 0.00017684 497.28436771835004 62.068 1.145 65.328 64.966 66.111 3.2594 161 76 3 0 0 0 0.0070648 6 14617 14578;14617;14664;14700;14746;14797 107.1 53.267 1 1007300 10098 1765 6227 6233 12590;12591;12592;12593;12594;12595 12591 0.057672247287428036 GESVLKLTF 9 Unmodified _GESVLKLTF_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 497.28460693359375 2 497.2844 992.554247 0.17975 8.9387E-05 0.15687 7.8011E-05 0.33662 0.0001674 497.28439783138805 62.155 1.107 65.321 64.934 66.041 3.1667 164 71 3 0 0 0 0.0055684 5 14654 14654;14701;14741;14783;14823 117.76 55.188 1 654600 10099 1765 6227 6233 12596;12597;12598;12599;12600 12596 0.057672247287428036 GETAFAFHL 9 Unmodified _GETAFAFHL_ 0 0 0 ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF ENSG00000132207|ENST00000251303|SLX1A ENSG00000132207|ENST00000251303|SLX1A MSMS UPN48_class_I_Rep_1 5 496.7453918457031 2 496.745442 991.476331 NaN NaN NaN NaN NaN NaN NaN 63.316 1 66.774 66.274 67.274 3.4578 0 0 0 0.074 1 14244 14244 30.225 19.401 1 10100 2738 6228 6234 12601 12601 -0.019747881366356523 GETAFAFHL 9 Unmodified _GETAFAFHL_ 0 0 0 ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF ENSG00000132207|ENST00000251303|SLX1A ENSG00000132207|ENST00000251303|SLX1A MULTI-MSMS UPN48_class_I_Rep_2 6 496.74591064453125 2 496.745442 991.476331 0.32571 0.00016179 -0.1061 -5.2703E-05 0.21961 0.00010909 496.7452593260241 63.165 0.4944 66.638 66.427 66.922 3.4738 56 42 2 0 0 0 0.40174 1 14188 14188 7.9102 1.7044 1 81458 10101 2738 6228 6234 12602 12602 -0.019747881366356523 GETAFAFHL 9 Unmodified _GETAFAFHL_ 0 0 0 ENSG00000132207|ENST00000251303|SLX1A;ENSG00000181625|ENST00000330181|SLX1B;ENST00000565219.1_1_16:29466524-29469442:+|nuORF ENSG00000132207|ENST00000251303|SLX1A ENSG00000132207|ENST00000251303|SLX1A MULTI-MSMS UPN48_class_I_Rep_3 7 496.7451171875 2 496.745442 991.476331 0.26868 0.00013346 -0.18354 -9.1173E-05 0.085137 4.2292E-05 496.7453047142405 62.967 0.49283 66.476 66.33 66.823 3.5091 50 36 2 0 0 0 0.045397 2 14076 14076;14119 50.855 32.709 1 95757 10102 2738 6228 6234 12603;12604 12603 -0.019747881366356523 GETAVGPLW 9 Unmodified _GETAVGPLW_ 0 0 0 REV__L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|8|1|sense REV__L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 465.24102783203125 2 465.239993 928.465432 0.18632 8.6686E-05 1.3471 0.00062671 1.5334 0.00071339 465.2406785307325 74.815 0.56664 78.404 78.075 78.642 3.59 96 65 2 0 0 0 0.40174 1 17584 17584 7.9102 0.62092 1 233400 + 10103 26100 6229 6235 12605 12605 -0.0016619051090174253 GETDGELLRRY 11 Unmodified _GETDGELLRRY_ 0 0 0 REV__CON__Q99PS0 REV__CON__Q99PS0 MULTI-MSMS UPN47_class_I_Rep_2 3 437.223876953125 3 436.889603 1307.64698 -0.73812 -0.00032248 0.22209 9.7031E-05 -0.51603 -0.00022545 436.8896390718294 30.671 0.73295 34.154 33.846 34.579 3.4821 112 57 3 0 0 0 0.66092 1 5045 5045 2.2527 0 1 134130 + + 10104 17501 6230 6236 12606 12606 0.005460777241978576 GETGLHPAP 9 Unmodified _GETGLHPAP_ 0 0 0 REV__nc|ENSG00000106077|Q8NFV4-5|ABHD11 REV__nc|ENSG00000106077|Q8NFV4-5|ABHD11 MSMS UPN47_class_I_Rep_1 2 439.72344970703125 2 439.721967 877.429381 NaN NaN NaN NaN NaN NaN NaN 20.888 1 24.532 24.032 25.032 3.6436 0 0 0 0.39428 1 2177 2177 2.0598 1.2661 1 + 10105 31956 6231 6237 12607 12607 -0.014236476877727 GETLGTVKF 9 Unmodified _GETLGTVKF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MULTI-SECPEP UPN47_class_I_Rep_1 2 475.6006164550781 2 476.260925 950.507297 -0.22557 -0.00010743 -0.183 -8.7157E-05 -0.40858 -0.00019459 476.26072975531264 42.851 0.57609 46.538 46.385 46.962 3.6875 55 40 2 0 0 0 0.1229 1 8834 8834 4.897 0 1 78436 + 10106 19771 6232 6238 12608 12608 0.03006365177623138 GETSTDLKL 9 Unmodified _GETSTDLKL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN48_class_I_Rep_2 6 482.2533874511719 2 482.253297 962.492041 NaN NaN NaN NaN NaN NaN NaN 36.669 1 40.371 39.871 40.871 3.7021 0 0 0 0.25702 1 6187 6187 13.042 0.51092 1 10107 3340 6233 6239 12609 12609 0.009294535897652167 GETVSLQKI 9 Unmodified _GETVSLQKI_ 0 0 0 AluJb_dup77070|chr11:33860482-33860803:+|2.179110231047056|0.3196928916588641|2.77|151.0|6|2|sense AluJb_dup77070|chr11:33860482-33860803:+|2.179110231047056|0.3196928916588641|2.77|151.0|6|2|sense AluJb_dup77070|chr11:33860482-33860803:+|2.179110231047056|0.3196928916588641|2.77|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.77935791015625 2 487.779482 973.544411 -0.0050883 -2.482E-06 -0.14687 -7.1639E-05 -0.15196 -7.4121E-05 487.7793317702106 44.399 0.49155 47.755 47.539 48.03 3.3556 50 34 2 0 0 0 0.31407 2 9307 9230;9307 13.042 0 1 88325 10108 65 6234 6240 12610;12611 12611 0.056580367233777906 GEVDPKVAL 9 Unmodified _GEVDPKVAL_ 0 0 0 ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF ENSG00000099795|ENST00000215565|NDUFB7 ENSG00000099795|ENST00000215565|NDUFB7 MULTI-MSMS UPN48_class_I_Rep_2 6 464.2607727050781 2 464.260925 926.507297 0.12887 5.9831E-05 -0.42365 -0.00019669 -0.29478 -0.00013685 464.2606586333774 41.595 0.47745 45.346 45.076 45.554 3.7508 67 53 2 0 0 0 0.12096 1 7632 7632 29.841 10.584 1 119160 10109 1446 6235 6241 12612 12612 0.04110365177609765 GEVDPKVAL 9 Unmodified _GEVDPKVAL_ 0 0 0 ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF ENSG00000099795|ENST00000215565|NDUFB7 ENSG00000099795|ENST00000215565|NDUFB7 MULTI-MSMS UPN48_class_I_Rep_3 7 464.2607116699219 2 464.260925 926.507297 0.10654 4.9461E-05 -0.69212 -0.00032132 -0.58558 -0.00027186 464.26050813015985 41.736 0.51653 45.382 45.207 45.724 3.6458 66 55 2 0 0 0 0.16799 1 7554 7554 23.79 6.6769 1 134340 10110 1446 6235 6241 12613 12613 0.04110365177609765 GEVDPKVAL 9 Unmodified _GEVDPKVAL_ 0 0 0 ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF ENSG00000099795|ENST00000215565|NDUFB7 ENSG00000099795|ENST00000215565|NDUFB7 MULTI-MATCH UPN48_class_I_Rep_1 5 2 464.260925 926.507297 0.075375 3.4994E-05 -0.40325 -0.00018721 -0.32787 -0.00015222 464.2606095584311 41.9 0.36111 45.408 45.229 45.59 3.5079 0.029635 8.6174E-05 NaN 29.841 50 35 2 NaN NaN NaN NaN 0 NaN NaN 0 103770 10111 1446 6235 6241 0.04110365177609765 GEVEQQRTY 9 Unmodified _GEVEQQRTY_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691.11,SUZ12,chr17,+,I1.1,31937521,31940285|24|7.38|2|intron;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MSMS UPN47_class_I_Rep_1 2 555.2642822265625 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 19.639 1 23.251 22.751 23.751 3.6118 0 0 0 0.35904 1 1843 1843 7.609 5.3062 1 10112 4831 6236 6242 12614 12614 -0.03501527292746687 GEVEQQRTY 9 Unmodified _GEVEQQRTY_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691.11,SUZ12,chr17,+,I1.1,31937521,31940285|24|7.38|2|intron;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MSMS UPN47_class_I_Rep_1 2 555.2642211914062 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 19.76 1 23.372 22.872 23.872 3.6118 0 0 0 0.31132 1 1874 1874 10.151 6.5541 1 10113 4831 6236 6242 12615 12615 -0.03501527292746687 GEVEQQRTY 9 Unmodified _GEVEQQRTY_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691.11,SUZ12,chr17,+,I1.1,31937521,31940285|24|7.38|2|intron;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MSMS UPN47_class_I_Rep_1 2 555.2645874023438 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 19.884 1 23.496 22.996 23.996 3.6118 0 0 0 0.35904 1 1904 1904 7.609 1.8771 1 10114 4831 6236 6242 12616 12616 -0.03501527292746687 GEVEQQRTY 9 Unmodified _GEVEQQRTY_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691.11,SUZ12,chr17,+,I1.1,31937521,31940285|24|7.38|2|intron;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 555.26416015625 2 555.264727 1108.5149 0.04771 2.6492E-05 -0.73576 -0.00040854 -0.68805 -0.00038205 555.2644040875051 20.143 0.4607 23.539 23.209 23.67 3.3963 68 45 2 0 0 0 0.41587 2 1992 1992;2027 7.1017 3.5052 1 41025 10115 4831 6236 6242 12617;12618 12617 -0.03501527292746687 GEVEQQRTY 9 Unmodified _GEVEQQRTY_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691.11,SUZ12,chr17,+,I1.1,31937521,31940285|24|7.38|2|intron;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.2649536132812 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 20.275 1 23.682 23.182 24.182 3.4074 0 0 0 0.39036 1 2073 2073 2.9952 1.151 1 10116 4831 6236 6242 12619 12619 -0.03501527292746687 GEVEQQRTY 9 Unmodified _GEVEQQRTY_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691.11,SUZ12,chr17,+,I1.1,31937521,31940285|24|7.38|2|intron;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 555.2642211914062 2 555.264727 1108.5149 -0.33962 -0.00018858 -0.27745 -0.00015406 -0.61707 -0.00034264 555.2645968497652 20.029 0.39933 23.38 23.041 23.44 3.3514 47 37 2 0 0 0 0.44742 1 2002 2002 5.2969 0.54088 1 59189 10117 4831 6236 6242 12620 12620 -0.03501527292746687 GEVFITVDCL 10 Unmodified _GEVFITVDCL_ 0 0 0 REV__ENSG00000156273.16,BACH1,chr21,+,I13.1,29329694,29342398|41|8.47|1|intron REV__ENSG00000156273.16,BACH1,chr21,+,I13.1,29329694,29342398|41|8.47|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 548.2733764648438 2 548.273175 1094.5318 0.33667 0.00018459 0.26648 0.0001461 0.60315 0.00033069 548.2732094598374 66.918 0.78761 66.918 66.512 67.3 0 196 82 3 0 0 0 0.35076 1 15235 15235 24.021 4.7636 1 906640 + 10118 19791 6237 6243 12621 12621 -0.011687427311699139 GEVKDFPDL 9 Unmodified _GEVKDFPDL_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS UPN48_class_I_Rep_1 5 510.2563171386719 2 510.25584 1018.49713 0.23417 0.00011949 0.71236 0.00036349 0.94653 0.00048297 510.25593882292094 50.675 0.55998 54.199 53.941 54.501 3.5246 55 36 2 0 0 0 0.22932 3 10363 10363;10384;10410 18.373 6.1324 1 135590 10119 1658 6238 6244 12622;12623;12624 12622 -0.011382425476313074 GEVKDFPDL 9 Unmodified _GEVKDFPDL_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MSMS UPN48_class_I_Rep_2 6 510.2564697265625 2 510.25584 1018.49713 NaN NaN NaN NaN NaN NaN NaN 50.407 1 54.101 53.601 54.601 3.6946 0 0 0 0.35904 1 10288 10288 7.609 1.8485 1 10120 1658 6238 6244 12625 12625 -0.011382425476313074 GEVKDFPDL 9 Unmodified _GEVKDFPDL_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS UPN48_class_I_Rep_3 7 510.7585754394531 2 510.25584 1018.49713 0.1701 8.6795E-05 0.047992 2.4488E-05 0.21809 0.00011128 510.2558198066391 50.659 0.46685 54.28 54.009 54.475 3.621 40 30 2 0 0 0 0.279 3 10240 10240;10280;10331 15.248 2.206 1 153610 10121 1658 6238 6244 12626;12627;12628 12626 -0.011382425476313074 GEVPTIESL 9 Unmodified _GEVPTIESL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558491.1_1_15:91029264-91029420:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MSMS UPN48_class_I_Rep_1 5 472.75048828125 2 472.75039 943.486227 NaN NaN NaN NaN NaN NaN NaN 62.769 1 66.232 65.732 66.732 3.4625 0 0 0 0.22485 1 14075 14075 14.838 4.7643 1 10122 3184 6239 6245 12629 12629 0.012223550780959158 GEVPTIESL 9 Unmodified _GEVPTIESL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558491.1_1_15:91029264-91029420:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS UPN48_class_I_Rep_2 6 472.7500915527344 2 472.75039 943.486227 0.26232 0.00012401 -0.50829 -0.00024029 -0.24596 -0.00011628 472.75021478068726 62.747 0.38503 66.221 65.893 66.278 3.4738 34 24 2 0 0 0 0.21527 2 13993 13993;14035 19.257 4.4187 1 102040 10123 3184 6239 6245 12630;12631 12630 0.012223550780959158 GEVREDLRL 9 Unmodified _GEVREDLRL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MSMS UPN48_class_I_Rep_1 5 543.7986450195312 2 543.798737 1085.58292 0.45281 0.00024624 -0.16569 -9.0103E-05 0.28712 0.00015613 544.3001076928819 36.944 0.50235 40.451 40.152 40.654 3.507 87 50 2 0 0 0 0.43982 1 6271 6271 5.7319 0 1 177910 10124 2760 6240 6246 12632 12632 0.0435534235787145 GEVREDLRL 9 Unmodified _GEVREDLRL_ 0 0 0 nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000132507|ENST00000336458|EIF5A nc|ENSG00000132507|P63241-2|EIF5A nc|ENSG00000132507|P63241-2|EIF5A MULTI-MSMS UPN48_class_I_Rep_3 7 543.79931640625 2 543.798737 1085.58292 0.40706 0.00022136 -0.51455 -0.00027981 -0.10749 -5.8452E-05 543.7984457916382 36.65 0.55878 40.313 40.059 40.617 3.663 103 62 2 0 0 0 0.43982 3 6031 6031;6143;6158 5.7319 0 1 152600 10125 2760 6240 6246 12633;12634;12635 12633 0.0435534235787145 GEVSVGARVP 10 Unmodified _GEVSVGARVP_ 0 0 0 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron MULTI-SECPEP UPN46_class_I_Rep_3 1 485.0907897949219 2 485.769448 969.524344 0.21775 0.00010578 -3.8584 -0.0018743 -3.6406 -0.0017685 485.7650915018324 52.046 0.033508 52.046 52.026 52.06 0 4 2 2 0 0 0 0.84575 1 11104 11104 6.2058 0 1 55639 10126 3572 6241 6247 12636 12636 0.03836285783427229 GEVTDFLRL 9 Unmodified _GEVTDFLRL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-SECPEP UPN48_class_I_Rep_3 7 525.3634033203125 2 525.284931 1048.55531 0.50072 0.00026302 -0.2707 -0.00014219 0.23002 0.00012083 525.2847382835929 69.495 0.61494 73.008 72.596 73.211 3.5128 66 47 2 0 0 0 0.09177 1 16048 16048 23.79 3.3752 1 153670 10127 1888 6242 6248 12637 12637 0.032974390976505674 GEVTDFLRL 9 Unmodified _GEVTDFLRL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MATCH UPN48_class_I_Rep_1 5 2 525.284931 1048.55531 0.3418 0.00017954 -0.10329 -5.4257E-05 0.23851 0.00012529 525.2848037053353 69.641 0.46439 73.096 72.863 73.327 3.4548 0.063832 8.5575E-05 NaN 28.495 51 34 2 NaN NaN NaN NaN 0 NaN NaN 0 140570 10128 1888 6242 6248 0.032974390976505674 GEVTDFLRL 9 Unmodified _GEVTDFLRL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MATCH UPN48_class_I_Rep_2 6 2 525.284931 1048.55531 0.39306 0.00020647 -0.20514 -0.00010776 0.18792 9.8709E-05 525.2848410717755 69.471 0.42567 72.992 72.748 73.174 3.5216 -0.039907 -2.143E-05 NaN 28.495 44 35 2 NaN NaN NaN NaN 0 NaN NaN 0 112960 10129 1888 6242 6248 0.032974390976505674 GEVTYVELL 9 Unmodified _GEVTYVELL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS UPN48_class_I_Rep_1 5 511.7741394042969 2 511.773865 1021.53318 0.27045 0.00013841 0.63225 0.00032357 0.9027 0.00046198 511.77404466253137 74.518 0.22834 78.008 77.835 78.063 3.49 33 25 2 0 0 0 0.16559 1 17584 17584 24.021 2.4836 1 74026 10130 1445 6243 6249 12638 12638 0.02327214629235641 GEVTYVELL 9 Unmodified _GEVTYVELL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS UPN48_class_I_Rep_3 7 511.77435302734375 2 511.773865 1021.53318 0.34885 0.00017853 1.8345 0.00093884 2.1833 0.0011174 511.77435059003125 74.431 0.10796 77.982 77.903 78.011 3.5505 19 14 2 0 0 0 0.16559 1 17434 17434 24.021 0 1 64327 10131 1445 6243 6249 12639 12639 0.02327214629235641 GEVTYVELL 9 Unmodified _GEVTYVELL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 511.773865 1021.53318 0.34885 0.00017853 1.8345 0.00093884 2.1833 0.0011174 511.77435059003125 74.431 0.10796 77.982 77.903 78.011 3.5505 -0.01313 0.0008133 NaN 24.021 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 64327 10132 1445 6243 6249 0.02327214629235641 GEWAFLLMAY 10 Unmodified _GEWAFLLMAY_ 0 0 0 REV__nc|ENSG00000159640|P12821-2|ACE REV__nc|ENSG00000159640|P12821-2|ACE MSMS UPN47_class_I_Rep_2 3 600.790283203125 2 600.791535 1199.56852 NaN NaN NaN NaN NaN NaN NaN 49.072 1 52.419 51.919 52.919 3.3465 0 0 0 0.53105 1 10666 10666 1.6526 0.17072 1 + 10133 19869 6244 6250 12640 12640 -0.02328446114597682 GEYASNYDYL 10 Unmodified _GEYASNYDYL_ 0 0 0 REV__L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|28|1|sense REV__L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|28|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 597.7509155273438 2 597.751118 1193.48768 0.47216 0.00028223 -0.022073 -1.3194E-05 0.45008 0.00026904 597.750982023018 79.33 0.87993 82.625 82.269 83.149 3.295 183 81 3 0 0 0 0.56078 1 19738 19738 3.2813 0 1 425860 + 10134 30395 6245 6251 12641 12641 -0.10132055623807901 GEYFAIKAL 9 Unmodified _GEYFAIKAL_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MULTI-MSMS UPN48_class_I_Rep_2 6 506.2793273925781 2 506.279118 1010.54368 0.38745 0.00019616 -0.23868 -0.00012084 0.14878 7.5324E-05 506.27892418293095 59.515 0.45248 63.002 62.789 63.242 3.4868 39 32 2 0 0 0 0.43153 1 13104 13104 6.2058 1.4498 1 73521 10135 4059 6246 6252 12642 12642 0.03883242074334703 GEYFAIKAL 9 Unmodified _GEYFAIKAL_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MULTI-MATCH UPN48_class_I_Rep_3 7 2 506.279118 1010.54368 0.23543 0.00011919 0.12585 6.3717E-05 0.36128 0.00018291 506.27901089669683 59.297 0.19036 62.82 62.649 62.84 3.5231 -0.090534 0.0003246 NaN 6.2058 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 75630 10136 4059 6246 6252 0.03883242074334703 GEYPGIPEL 9 Unmodified _GEYPGIPEL_ 0 0 0 nc|ENSG00000132749|Q9Y4I5-3|TESMIN;ENSG00000132749.11,TESMIN,chr11,-,I5.1,68738799,68742317|114|6.44|2|intron;nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN MULTI-MSMS UPN48_class_I_Rep_1 5 487.7449035644531 2 487.745108 973.475663 0.19122 9.3268E-05 -1.9471 -0.00094971 -1.7559 -0.00085644 487.74485677112784 69.962 0.25689 73.422 73.257 73.514 3.4598 28 20 2 0 0 0 0.42249 1 16285 16285 6.7232 0 1 69258 10137 2774 6247 6253 12643 12643 -0.012136275763396043 GEYPGIPEL 9 Unmodified _GEYPGIPEL_ 0 0 0 nc|ENSG00000132749|Q9Y4I5-3|TESMIN;ENSG00000132749.11,TESMIN,chr11,-,I5.1,68738799,68742317|114|6.44|2|intron;nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN MSMS UPN48_class_I_Rep_1 5 487.7442932128906 2 487.745108 973.475663 NaN NaN NaN NaN NaN NaN NaN 70.154 1 73.614 73.114 74.114 3.4598 0 0 0 0.37476 1 16328 16328 6.7232 0 1 10138 2774 6247 6253 12644 12644 -0.012136275763396043 GEYPGIPEL 9 Unmodified _GEYPGIPEL_ 0 0 0 nc|ENSG00000132749|Q9Y4I5-3|TESMIN;ENSG00000132749.11,TESMIN,chr11,-,I5.1,68738799,68742317|114|6.44|2|intron;nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN MULTI-MSMS UPN48_class_I_Rep_2 6 487.7451477050781 2 487.745108 973.475663 0.25208 0.00012295 -1.9623 -0.00095712 -1.7103 -0.00083417 487.74495659677797 69.864 0.15561 73.386 73.259 73.415 3.5216 19 11 2 0 0 0 0.42249 1 16216 16216 6.7232 0 1 65076 10139 2774 6247 6253 12645 12645 -0.012136275763396043 GEYPGIPEL 9 Unmodified _GEYPGIPEL_ 0 0 0 nc|ENSG00000132749|Q9Y4I5-3|TESMIN;ENSG00000132749.11,TESMIN,chr11,-,I5.1,68738799,68742317|114|6.44|2|intron;nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN MULTI-MSMS UPN48_class_I_Rep_3 7 487.74530029296875 2 487.745108 973.475663 0.29568 0.00014422 -1.2708 -0.00061984 -0.97515 -0.00047563 487.74504175546446 69.81 0.30886 73.322 73.052 73.36 3.5128 32 24 2 0 0 0 0.42249 1 16098 16098 6.7232 0 1 81447 10140 2774 6247 6253 12646 12646 -0.012136275763396043 GEYPGIPEL 9 Unmodified _GEYPGIPEL_ 0 0 0 nc|ENSG00000132749|Q9Y4I5-3|TESMIN;ENSG00000132749.11,TESMIN,chr11,-,I5.1,68738799,68742317|114|6.44|2|intron;nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN nc|ENSG00000132749|Q9Y4I5-3|TESMIN MULTI-MSMS UPN48_class_I_Rep_3 7 487.74505615234375 2 487.745108 973.475663 0.29514 0.00014395 -1.5168 -0.00073981 -1.2217 -0.00059586 487.7449640939532 69.897 0.2803 73.41 73.36 73.641 3.5128 29 21 2 0 0 0 0.36392 1 16142 16142 10.074 0.6908 1 67692 10141 2774 6247 6253 12647 12647 -0.012136275763396043 GFCCCHCCCC 10 Unmodified _GFCCCHCCCC_ 0 0 0 L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|83|3|anti-sense L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|83|3|anti-sense L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|83|3|anti-sense MSMS UPN46_class_I_Rep_3 1 541.1182250976562 2 541.119099 1080.22365 NaN NaN NaN NaN NaN NaN NaN 73.11 1 73.11 72.61 73.61 0 0 0 0 0.53105 1 16934 16934 0 0 1 10142 8929 6248 6254 12648 12648 -0.3132573438454074 GFDPIMKFVGW 11 Unmodified _GFDPIMKFVGW_ 0 0 0 L1PA16_dup6315|chr7:110714895-110716706:-|1.01515802892525|0.0142527203138965|6.15|151.0|102|2|anti-sense L1PA16_dup6315|chr7:110714895-110716706:-|1.01515802892525|0.0142527203138965|6.15|151.0|102|2|anti-sense L1PA16_dup6315|chr7:110714895-110716706:-|1.01515802892525|0.0142527203138965|6.15|151.0|102|2|anti-sense MSMS UPN47_class_I_Rep_3 4 432.8852844238281 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 60.949 1 64.114 63.614 64.614 3.1651 0 0 0 0.38417 1 14344 14344 0.45452 0 1 10143 14112 6249 6255 12649 12649 0.0012721818509362492 GFDYQNPSFY 10 Unmodified _GFDYQNPSFY_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|190|3|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|190|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 619.7650756835938 2 619.261653 1236.50875 0.14247 8.8227E-05 -0.68378 -0.00042344 -0.54131 -0.00033521 619.7636756045996 43.65 0.6684 47.008 46.711 47.379 3.358 55 36 3 0 0 0 0.56078 1 9070 9070 3.2813 0.78282 1 123200 + 10144 25380 6250 6256 12650 12650 -0.10004045524260619 GFEGADAEEVI 11 Unmodified _GFEGADAEEVI_ 0 0 0 ENST00000416030.1_1_9:76089327-76090080:-|nuORF ENST00000416030.1_1_9:76089327-76090080:-|nuORF ENST00000416030.1_1_9:76089327-76090080:-|nuORF MSMS UPN48_class_I_Rep_1 5 568.7571411132812 2 568.758943 1135.50333 NaN NaN NaN NaN NaN NaN NaN 22.51 1 26.07 25.57 26.57 3.5605 0 0 0 0.38417 1 2207 2207 1.1933 0.39971 1 10145 6647 6251 6257 12651 12651 -0.058997691067588676 GFEITPPVVLR 11 Unmodified _GFEITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 614.3590698242188 2 614.358431 1226.70231 0.47153 0.00028969 -0.40805 -0.00025069 0.063476 3.8997E-05 614.3580692212688 69.02 0.93217 72.475 72.133 73.065 3.4548 149 69 3 0 0 0 0.28117 6 15990 15908;15950;15990;16030;16077;16094 33.445 25.289 1 374160 10146 4909 6252 6258 12652;12653;12654;12655;12656;12657 12654 0.09802535982612426 GFEITPPVVLR 11 Unmodified _GFEITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 614.3590087890625 2 614.358431 1226.70231 0.49396 0.00030347 -0.24167 -0.00014847 0.25229 0.00015499 614.3582120460703 68.887 0.68532 72.396 72.074 72.76 3.5083 85 49 2 0 0 0 0.15878 4 15928 15846;15887;15928;15972 47.732 36.932 1 288090 10147 4909 6252 6258 12658;12659;12660;12661 12660 0.09802535982612426 GFEITPPVVLR 11 Unmodified _GFEITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MSMS UPN48_class_I_Rep_2 6 614.3576049804688 2 614.358431 1226.70231 NaN NaN NaN NaN NaN NaN NaN 69.219 1 72.741 72.241 73.241 3.5216 0 0 0 0.33232 1 16021 16021 10.151 0 1 10148 4909 6252 6258 12662 12662 0.09802535982612426 GFEITPPVVLR 11 Unmodified _GFEITPPVVLR_ 0 0 0 ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF ENST00000518587.1_1_5:170814889-170819841:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 614.3587646484375 2 614.358431 1226.70231 0.63277 0.00038875 -0.56728 -0.00034851 0.065499 4.024E-05 614.3579550878039 68.844 0.80699 72.354 71.883 72.69 3.5094 125 60 3 0 0 0 0.22415 6 15845 15724;15767;15805;15845;15883;15903 38.615 30.459 1 258180 10149 4909 6252 6258 12663;12664;12665;12666;12667;12668 12666 0.09802535982612426 GFFFFFFF 8 Unmodified _GFFFFFFF_ 0 0 0 ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron;ENSG00000004897.12,CDC27,chr17,-,I3.1,47172065,47181281|28|11.66|1|intron;ENST00000505490.2_1_17:79845792-79845960:-|nuORF;L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|21|2|sense;L1PREC2_dup3379|chr7:77365234-77368106:-|1.8557664641334937|0.1116663482849616|4.05|151.0|170|3|anti-sense;ENST00000234310.7_1_2:68406085-68406229:-|nuORF;PABL_A-int_dup80|chr4:87364176-87364890:+|1.3072495843094871|0.0356182367944581|5.2|151.0|37|2|anti-sense;L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|61|2|anti-sense;Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|1|1|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|66|1|anti-sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|17|2|anti-sense;L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|45|2|anti-sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|19|2|anti-sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|16|3|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|247|2|anti-sense;L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|44|1|anti-sense;L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|64|1|anti-sense;L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|63|2|anti-sense;L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|214|1|anti-sense;L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|24|3|sense;L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|91|3|anti-sense;L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|67|3|anti-sense;L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|135|3|anti-sense;L1MB2_dup5839|chr12:922116-922701:+|3.171338943953434|0.0615959358850894|5.69|151.0|29|1|anti-sense;ENSG00000213468.7,FIRRE,chrX,-,I13.1,131743249,131749256|37|7.58|1|intron;L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|77|2|anti-sense;L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|139|3|anti-sense;L1M3de_dup155|chr6:118869421-118871611:+|1.4781474985084055|0.0160360641098552|6.53|151.0|103|1|anti-sense;ENSG00000177565.18,TBL1XR1,chr3,-,I6.1,177171418,177194063|27|12.97|2|intron;L1PA15_dup1462|chr3:111646447-111647244:+|3.1838610124828315|0.1474004480999574|4.43|151.0|33|1|anti-sense;L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|18|1|anti-sense;AluJr_dup53087|chr11:85963778-85963979:-|1.1924661245478567|0.2120056142648256|2.49|151.0|16|3|anti-sense;L1MB3_dup6866|chr7:99016296-99017156:-|1.2562770200700262|0.1667090130072917|2.91|151.0|41|2|anti-sense;L1MC5_dup8003|chr9:100164426-100165106:-|1.0143964267998575|0.0083463115566891|6.93|150.0|35|1|anti-sense;L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|231|1|anti-sense;L1MD1_dup6335|chr19:39147094-39147866:-|1.028988457013287|0.0582980387256412|4.14|151.0|45|2|anti-sense;L1MB3_dup6866|chr7:99016296-99017156:-|1.2562770200700262|0.1667090130072917|2.91|151.0|50|3|anti-sense;L1MD1_dup6335|chr19:39147094-39147866:-|1.028988457013287|0.0582980387256412|4.14|151.0|52|3|anti-sense;L1PB1_dup4754|chr6:4842265-4844381:-|1.345692351313443|0.012764688755693|6.72|151.0|85|1|anti-sense;L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|63|3|sense;L1MD3_dup4217|chr15:72511605-72512796:-|2.7686450282259782|0.0594471450872421|5.54|151.0|53|1|anti-sense;L1PREC2_dup3379|chr7:77365234-77368106:-|1.8557664641334937|0.1116663482849616|4.05|151.0|101|1|anti-sense;L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|326|3|anti-sense;L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|223|2|anti-sense ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron;REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|155|3|anti-sense ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron MSMS UPN48_class_I_Rep_1 5 553.2639770507812 2 553.262739 1104.51093 NaN NaN NaN NaN NaN NaN NaN 68.401 1 71.853 71.353 72.353 3.4517 0 0 0 0.4032 1 15792 15792 6.3541 0 1 10150 2544;30287 6253 6259 12669 12669 -0.03714920257857557 GFFFFFYF 8 Unmodified _GFFFFFYF_ 0 0 0 L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|113|2|anti-sense L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|113|2|anti-sense L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|113|2|anti-sense MSMS UPN47_class_I_Rep_2 3 561.260009765625 2 561.260197 1120.50584 NaN NaN NaN NaN NaN NaN NaN 71.152 1 74.44 73.94 74.94 3.288 0 0 0 0.40581 1 17372 17372 2.8892 0 1 10151 8500 6254 6260 12670 12670 -0.04959224120489125 GFFIFLYI 8 Unmodified _GFFIFLYI_ 0 0 0 L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|81|3|anti-sense L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|81|3|anti-sense L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|81|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 509.78228759765625 2 510.283672 1018.55279 0.31257 0.0001595 -0.55698 -0.00028422 -0.24441 -0.00012472 510.28341531471085 76.033 0.11407 79.634 79.542 79.656 3.6011 21 13 2 0 0 0 0.72333 1 17947 17947 0.79363 0 1 66960 10152 8962 6255 6261 12671 12671 0.04425635430629882 GFFKISFVA 9 Unmodified _GFFKISFVA_ 0 0 0 HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|12|1|sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|12|1|sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|12|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 508.6197814941406 2 508.284203 1014.55385 0.18109 9.2045E-05 0.36817 0.00018714 0.54926 0.00027918 508.78685534109064 35.916 0.10125 39.582 39.497 39.598 3.6668 11 9 2 0 0 0 0.11873 1 5879 5879 8.5933 2.8329 1 74633 10153 8187 6256 6262 12672 12672 0.04715849799572425 GFFNVIRL 8 Unmodified _GFFNVIRL_ 0 0 0 REV__L1M4a1_dup128|chr1:147959899-147960570:+|1.4008565771016783|0.0364638944388042|5.26|151.0|47|3|anti-sense REV__L1M4a1_dup128|chr1:147959899-147960570:+|1.4008565771016783|0.0364638944388042|5.26|151.0|47|3|anti-sense MSMS UPN46_class_I_Rep_3 1 483.2575988769531 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 74.26 1 74.26 73.76 74.76 0 0 0 0 0.40746 1 17224 17224 0.69038 0 1 + 10154 24480 6257 6263 12673 12673 0.06574385376643477 GFFQDLEI 8 Unmodified _GFFQDLEI_ 0 0 0 ENSG00000139055|ENST00000266397|ERP27 ENSG00000139055|ENST00000266397|ERP27 ENSG00000139055|ENST00000266397|ERP27 MSMS UPN47_class_I_Rep_3 4 484.7373352050781 2 484.739825 967.465098 NaN NaN NaN NaN NaN NaN NaN 39.179 1 42.417 41.917 42.917 3.238 0 0 0 0.3903 1 7711 7711 11.64 0 1 10155 3124 6258 6264 12674 12674 -0.019936102307838155 GFFVYFFV 8 Unmodified _GFFVYFFV_ 0 0 0 L1ME1_dup10335|chr5:122787894-122789429:-|2.1039162228704247|0.2751806887154353|2.93|151.0|77|2|anti-sense L1ME1_dup10335|chr5:122787894-122789429:-|2.1039162228704247|0.2751806887154353|2.93|151.0|77|2|anti-sense L1ME1_dup10335|chr5:122787894-122789429:-|2.1039162228704247|0.2751806887154353|2.93|151.0|77|2|anti-sense MSMS UPN48_class_I_Rep_3 7 513.2608032226562 2 513.260197 1024.50584 NaN NaN NaN NaN NaN NaN NaN 26.721 1 30.488 29.988 30.988 3.7663 0 0 0 0.40738 1 3420 3420 0.79363 0 1 10156 12163 6259 6265 12675 12675 -0.005432241204744059 GFFYFLIFFS 10 Unmodified _GFFYFLIFFS_ 0 0 0 REV__Charlie20a_dup683|chr14:103429702-103430204:+|1.593139939420854|0.0194745397938645|6.35|151.0|16|3|sense REV__Charlie20a_dup683|chr14:103429702-103430204:+|1.593139939420854|0.0194745397938645|6.35|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 644.3245849609375 2 644.326068 1286.63758 NaN NaN NaN NaN NaN NaN NaN 40.561 1 44.302 43.802 44.802 3.7413 0 0 0 0.53105 1 7313 7313 1.6526 0.17072 1 + 10157 17360 6260 6266 12676 12676 0.0057296117659006995 GFGGTYAVNL 10 Unmodified _GFGGTYAVNL_ 0 0 0 REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 499.7508850097656 2 499.750724 997.486896 0.23648 0.00011818 0.074872 3.7417E-05 0.31135 0.0001556 499.7507716799796 69.414 0.49054 72.869 72.623 73.114 3.4548 53 35 2 0 0 0 0.52083 1 16144 16144 9.3831 0.63772 1 131040 + 10158 23162 6261 6267 12677 12677 -0.011948054821914411 GFGSSFFY 8 Unmodified _GFGSSFFY_ 0 0 0 REV__L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|175|1|anti-sense REV__L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|175|1|anti-sense MSMS UPN46_class_I_Rep_3 1 456.2018737792969 2 456.200336 910.386119 NaN NaN NaN NaN NaN NaN NaN 81.083 1 81.083 80.583 81.583 0 0 0 0 0.40738 1 19130 19130 0.79363 0 1 + 10159 25002 6262 6268 12678 12678 -0.07265837465035929 GFHLKHLSF 9 Unmodified _GFHLKHLSF_ 0 0 0 L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|43|2|anti-sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|43|2|anti-sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.3009033203125 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 67.19 1 70.642 70.142 71.142 3.4516 0 0 0 0.38478 1 15422 15422 4.3292 0 1 10160 9695 6263 6269 12679 12679 0.04289172779635919 GFIKALTTEI 10 Unmodified _GFIKALTTEI_ 0 0 0 REV__ENSG00000070019|ENST00000261170|GUCY2C REV__ENSG00000070019|ENST00000261170|GUCY2C MULTI-MSMS UPN47_class_I_Rep_2 3 546.8007202148438 2 546.818607 1091.62266 0.35358 0.00019334 -0.09727 -5.3189E-05 0.25631 0.00014015 546.8184325427327 65.171 0.36798 68.427 68.282 68.65 3.2556 34 28 2 0 0 0 0.54466 1 15593 15593 6.2058 0.97511 1 74801 + 10161 17790 6264 6270 12680 12680 0.08051469308588821 GFIKLHKK 8 Unmodified _GFIKLHKK_ 0 0 0 REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|60|3|sense REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|60|3|sense MSMS UPN48_class_I_Rep_1 5 485.8118896484375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 72.476 1 75.949 75.449 76.449 3.4732 0 0 0 0.40738 1 17011 17011 0.79363 0 1 + 10162 24328 6265 6271 12681 12681 0.12634951164693575 GFILTFVFRV 10 Unmodified _GFILTFVFRV_ 0 0 0 REV__L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|163|1|anti-sense REV__L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|163|1|anti-sense MSMS UPN46_class_I_Rep_3 1 400.2371520996094 3 400.237615 1197.69102 NaN NaN NaN NaN NaN NaN NaN 109.47 1 109.47 108.97 109.97 0 0 0 0 0.53105 1 26888 26888 3.5871 0 1 + 10163 26675 6266 6272 12682 12682 0.100077586791258 GFILTFVFRV 10 Unmodified _GFILTFVFRV_ 0 0 0 REV__L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|163|1|anti-sense REV__L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|163|1|anti-sense MSMS UPN46_class_I_Rep_3 1 400.23809814453125 3 400.237615 1197.69102 NaN NaN NaN NaN NaN NaN NaN 109.72 1 109.72 109.22 110.22 0 0 0 0 0.53105 1 26975 26975 3.5871 0 1 + 10164 26675 6266 6272 12683 12683 0.100077586791258 GFISEFSVL 9 Unmodified _GFISEFSVL_ 0 0 0 L1M1_dup7669|chr12:111498037-111499421:+|1.368120557168667|0.0287041471917156|5.57|151.0|53|1|anti-sense;L1PB3_dup113|chr1:167292441-167294060:+|2.0042800825219707|0.1041442409131026|4.27|151.0|66|1|anti-sense;L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|71|1|anti-sense L1M1_dup7669|chr12:111498037-111499421:+|1.368120557168667|0.0287041471917156|5.57|151.0|53|1|anti-sense L1M1_dup7669|chr12:111498037-111499421:+|1.368120557168667|0.0287041471917156|5.57|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.8280334472656 2 499.7633 997.512048 NaN NaN NaN NaN NaN NaN NaN 71.051 1 74.426 73.926 74.926 3.3751 0 0 0 0.38478 1 17302 17302 4.3292 1.0479 1 10165 8614 6267 6273 12684 12684 0.013192493203860067 GFIVFATGDV 10 Unmodified _GFIVFATGDV_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MULTI-MSMS UPN47_class_I_Rep_2 3 513.2686767578125 2 513.26875 1024.52295 0.15088 7.7444E-05 0.062912 3.2291E-05 0.2138 0.00010973 513.2686902396615 78.312 1.5474 81.655 81.2 82.748 3.3428 443 159 4 0 0 0 0.40227 1 19624 19624 19.257 5.3509 1 2405800 + + 10166 17493 6268 6274 12685 12685 0.011666516946661432 GFIVFATGDV 10 Unmodified _GFIVFATGDV_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MULTI-MSMS UPN47_class_I_Rep_3 4 513.2679443359375 2 513.26875 1024.52295 0.29986 0.00015391 -0.48815 -0.00025055 -0.1883 -9.6646E-05 513.2683538072187 79.905 0.2925 83.214 82.992 83.285 3.309 51 32 2 0 0 0 0.51565 1 19950 19950 10.074 1.4806 1 96291 + + 10167 17493 6268 6274 12686 12686 0.011666516946661432 GFLGPVWTCY 10 Unmodified _GFLGPVWTCY_ 0 0 0 MER5A_dup32040|chr19:3193550-3193689:+|1.043600077797191|0.4203459221824103|1.31|151.0|3|3|sense MER5A_dup32040|chr19:3193550-3193689:+|1.043600077797191|0.4203459221824103|1.31|151.0|3|3|sense MER5A_dup32040|chr19:3193550-3193689:+|1.043600077797191|0.4203459221824103|1.31|151.0|3|3|sense MSMS UPN47_class_I_Rep_2 3 571.7713012695312 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 67.918 1 71.188 70.688 71.688 3.2696 0 0 0 0.53105 1 16405 16405 7.2892 0.56607 1 10168 16145 6269 6275 12687 12687 -0.038450018031426225 GFLKKVYYKK 10 Unmodified _GFLKKVYYKK_ 0 0 0 REV__L1MC4_dup20263|chr15:63519065-63520554:-|3.500981060428465|0.1960975295624056|4.16|151.0|98|2|anti-sense REV__L1MC4_dup20263|chr15:63519065-63520554:-|3.500981060428465|0.1960975295624056|4.16|151.0|98|2|anti-sense MSMS UPN48_class_I_Rep_2 6 637.3851318359375 2 637.386991 1272.75943 NaN NaN NaN NaN NaN NaN NaN 102.13 1 105.86 105.36 106.36 3.7252 0 0 0 0.53105 1 24204 24204 1.4819 0.15237 1 + 10169 26861 6270 6276 12688 12688 0.13396003258981182 GFPIIIIG 8 Unmodified _GFPIIIIG_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|101|3|anti-sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|101|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 414.7616271972656 2 415.262739 828.510926 0.07278 3.0223E-05 0.98949 0.0004109 1.0623 0.00044112 415.2631777303368 83.335 0.11507 83.335 83.295 83.41 0 22 12 2 0 0 0 0.72333 1 19806 19806 0.79363 0 1 138880 + 10170 23928 6271 6277 12689 12689 0.08981079742147813 GFPVSLTVS 9 Unmodified _GFPVSLTVS_ 0 0 0 L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 453.75018310546875 2 453.750193 905.485833 0.071168 3.2293E-05 0.66914 0.00030362 0.74031 0.00033591 453.75031534210626 74.72 0.21836 78.114 77.985 78.203 3.3937 30 19 2 0 0 0 0.43153 1 18399 18399 6.2058 1.4498 1 90204 10171 9982 6272 6278 12690 12690 0.02930980148892104 GFPVSLTVS 9 Unmodified _GFPVSLTVS_ 0 0 0 L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 453.750193 905.485833 0.071168 3.2293E-05 0.66914 0.00030362 0.74031 0.00033591 453.75031534210626 74.72 0.21836 78.114 77.985 78.203 3.3937 -0.098027 -0.0001689 NaN 6.2058 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 90204 10172 9982 6272 6278 0.02930980148892104 GFPVSLTVS 9 Unmodified _GFPVSLTVS_ 0 0 0 L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|97|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 453.750193 905.485833 -0.10889 -4.9407E-05 0.95369 0.00043274 0.84481 0.00038333 453.75047012274183 74.997 0.46001 78.31 78.16 78.62 3.3127 0.098027 8.9336E-05 NaN 6.2058 73 45 3 NaN NaN NaN NaN 0 NaN NaN 0 116700 10173 9982 6272 6278 0.02930980148892104 GFRFIILM 8 Unmodified _GFRFIILM_ 0 0 0 REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|294|2|anti-sense REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|294|2|anti-sense MSMS UPN48_class_I_Rep_3 7 498.7892761230469 2 498.788598 995.562644 NaN NaN NaN NaN NaN NaN NaN 26.769 1 30.535 30.035 31.035 3.7663 0 0 0 0.40738 1 3433 3433 0.79363 0 1 + 10174 30431 6273 6279 12691 12691 0.06468500164407942 GFRMDECKLVV 11 Unmodified _GFRMDECKLVV_ 0 0 0 REV__THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|17|1|sense REV__THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|17|1|sense MSMS UPN47_class_I_Rep_3 4 432.8851623535156 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 93.94 1 97.346 96.846 97.846 3.4068 0 0 0 0.38417 1 23398 23398 0.40827 0.32491 1 + 10175 32254 6274 6280 12692 12692 0.0006205547372246656 GFSHFIEAI 9 Unmodified _GFSHFIEAI_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|247|3|anti-sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|247|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.7613220214844 2 510.761092 1019.50763 0.35317 0.00018039 0.061515 3.142E-05 0.41469 0.00021181 510.76098877108996 63.981 0.49805 67.439 67.056 67.554 3.4578 55 36 2 0 0 0 0.20276 1 14415 14415 20.454 0 1 104170 + 10176 25120 6275 6281 12693 12693 -0.0013421510253692759 GFSHFIEAI 9 Unmodified _GFSHFIEAI_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|247|3|anti-sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|247|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2618713378906 2 510.761092 1019.50763 0.3613 0.00018454 -0.076665 -3.9157E-05 0.28464 0.00014538 510.76100530953323 63.646 0.49914 67.12 66.96 67.459 3.4743 49 36 2 0 0 0 0.41259 1 14341 14341 7.2892 0 1 112470 + 10177 25120 6275 6281 12694 12694 -0.0013421510253692759 GFSHFIEAI 9 Unmodified _GFSHFIEAI_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|247|3|anti-sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|247|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.7613525390625 2 510.761092 1019.50763 0.30912 0.00015789 -0.1037 -5.2966E-05 0.20543 0.00010492 510.76092902001585 63.55 0.58268 67.059 66.823 67.405 3.5091 62 46 2 0 0 0 0.41259 1 14238 14238 7.2892 0 1 129900 + 10178 25120 6275 6281 12695 12695 -0.0013421510253692759 GFVATPVTVLA 11 Unmodified _GFVATPVTVLA_ 0 0 0 REV__ENSG00000173080|ENST00000368318|RXFP4 REV__ENSG00000173080|ENST00000368318|RXFP4 MULTI-MSMS UPN47_class_I_Rep_2 3 537.8134765625 2 537.813325 1073.6121 0.31773 0.00017088 -0.11128 -5.9846E-05 0.20645 0.00011103 537.81323740008 66.291 0.91208 69.55 69.243 70.155 3.2588 85 59 2 0 0 0 0.4356 1 15924 15924 9.3831 9.3831 1 612490 + 10179 20470 6276 6282 12696 12696 0.07823486654183398 GFVFIWHW 8 Unmodified _GFVFIWHW_ 0 0 0 REV__L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|64|3|anti-sense REV__L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|64|3|anti-sense MSMS UPN47_class_I_Rep_2 3 546.75146484375 2 546.276712 1090.53887 NaN NaN NaN NaN NaN NaN NaN 28.351 1 31.85 31.35 32.35 3.4986 0 0 0 0.40738 1 4387 4387 0.79363 0 1 + 10180 24343 6277 6283 12697 12697 -0.0027759727777265653 GFVFYTSS 8 Unmodified _GFVFYTSS_ 0 0 0 L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|53|1|anti-sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|53|1|anti-sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.212890625 2 454.213443 906.412334 NaN NaN NaN NaN NaN NaN NaN 28.99 1 32.482 31.982 32.982 3.4923 0 0 0 0.40738 1 4579 4579 0.79363 0.10326 1 10181 10154 6278 6284 12698 12698 -0.04461568293561413 GFVPFGFPYV 10 Unmodified _GFVPFGFPYV_ 0 0 0 REV__L1ME1_dup496|chr1:45600221-45601560:-|2.500623807576311|0.031496047755996|6.31|151.0|84|3|anti-sense REV__L1ME1_dup496|chr1:45600221-45601560:-|2.500623807576311|0.031496047755996|6.31|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.8174438476562 2 565.289485 1128.56442 NaN NaN NaN NaN NaN NaN NaN 51.948 1 55.471 54.971 55.971 3.5227 0 0 0 0.53105 1 10764 10764 1.8442 0.36234 1 + 10182 27773 6279 6285 12699 12699 0.005278324539858659 GFVRQHRA 8 Unmodified _GFVRQHRA_ 0 0 0 MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|47|1|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|47|1|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|47|1|anti-sense MSMS UPN48_class_I_Rep_2 6 485.771240234375 2 485.770117 969.525681 NaN NaN NaN NaN NaN NaN NaN 34.764 1 38.437 37.937 38.937 3.6735 0 0 0 0.40604 1 5641 5641 2.5775 0.27475 1 10183 16608 6280 6286 12700 12700 0.039699646628378105 GFVVLLTSGVK 11 Unmodified _GFVVLLTSGVK_ 0 0 0 LTR12_dup307|chr6:36448705-36449666:-|2.624100085061213|0.1044165280226108|4.65|151.0|56|2|anti-sense;LTR12_dup307|chr6:36448705-36449666:-|2.624100085061213|0.1044165280226108|4.65|151.0|43|1|anti-sense LTR12_dup307|chr6:36448705-36449666:-|2.624100085061213|0.1044165280226108|4.65|151.0|56|2|anti-sense LTR12_dup307|chr6:36448705-36449666:-|2.624100085061213|0.1044165280226108|4.65|151.0|56|2|anti-sense MSMS UPN48_class_I_Rep_3 7 560.34033203125 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 95.502 1 99.41 98.91 99.91 3.9084 0 0 0 0.38417 1 22637 22637 1.4819 0.68827 1 10184 15529 6281 6287 12701 12701 0.11535748579603933 GFWAYWEK 8 Unmodified _GFWAYWEK_ 0 0 0 REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|123|3|anti-sense REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|123|3|anti-sense MSMS UPN48_class_I_Rep_2 6 543.7557983398438 2 543.75581 1085.49707 NaN NaN NaN NaN NaN NaN NaN 53.888 1 57.47 56.97 57.97 3.5817 0 0 0 0.40738 1 11337 11337 0.79363 0 1 + 10185 32403 6282 6288 12702 12702 -0.04226197756975125 GFWFHSIT 8 Unmodified _GFWFHSIT_ 0 0 0 L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|244|3|anti-sense L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|244|3|anti-sense L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|244|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.741455078125 2 497.742702 993.470852 0.17927 8.9228E-05 -0.77008 -0.0003833 -0.59081 -0.00029407 497.7417295670791 58.458 0.31737 61.876 61.693 62.01 3.4171 25 20 2 0 0 0 0.82752 1 13538 13538 5.2307 0 1 58403 10186 9974 6283 6289 12703 12703 -0.026144669284462907 GFWKKRHM 8 Unmodified _GFWKKRHM_ 0 0 0 ENSG00000112195|ENST00000483722|TREML2 ENSG00000112195|ENST00000483722|TREML2 ENSG00000112195|ENST00000483722|TREML2 MSMS UPN48_class_I_Rep_3 7 545.2921142578125 2 545.292371 1088.57019 NaN NaN NaN NaN NaN NaN NaN 26.529 1 30.295 29.795 30.795 3.7663 0 0 0 0.40746 1 3370 3370 0.69038 0 1 10187 2002 6284 6290 12704 12704 0.029446524846662214 GFWMFFLY 8 Unmodified _GFWMFFLY_ 0 0 0 L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense MSMS UPN47_class_I_Rep_2 3 555.7613525390625 2 555.759507 1109.50446 NaN NaN NaN NaN NaN NaN NaN 70.54 1 73.823 73.323 74.323 3.2828 0 0 0 0.40581 1 17193 17193 2.8892 0 1 10188 9220 6285 6291 12705 12705 -0.045911814808960116 GFWVLFLV 8 Unmodified _GFWVLFLV_ 0 0 0 L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|156|3|anti-sense L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|156|3|anti-sense L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|156|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.781982421875 2 490.783839 979.553125 NaN NaN NaN NaN NaN NaN NaN 115.3 1 118.78 118.28 119.28 3.4802 0 0 0 0.40738 1 28345 28345 0.79363 0 1 10189 9840 6286 6292 12706 12706 0.06253055150500586 GFYILKWLA 9 Unmodified _GFYILKWLA_ 0 0 0 MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|4|2|sense MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|4|2|sense MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|4|2|sense MSMS UPN48_class_I_Rep_1 5 555.8214111328125 2 555.820953 1109.62735 NaN NaN NaN NaN NaN NaN NaN 97.109 1 100.72 100.22 101.22 3.6088 0 0 0 0.39518 1 23423 23423 1.8442 0 1 10190 16140 6287 6293 12707 12707 0.07692398242056697 GFYMMGVY 8 Unmodified _GFYMMGVY_ 0 0 0 nc|ENSG00000109738|P48167-2|GLRB;ENSG00000109738|ENST00000264428|GLRB nc|ENSG00000109738|P48167-2|GLRB nc|ENSG00000109738|P48167-2|GLRB MSMS UPN47_class_I_Rep_1 2 484.2060546875 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 18.234 1 21.784 21.284 22.284 3.5504 0 0 0 0.40738 1 1490 1490 0.79363 0 1 10191 1907 6288 6294 12708 12708 -0.08659680037703765 GFYMMGVY 8 Unmodified _GFYMMGVY_ 0 0 0 nc|ENSG00000109738|P48167-2|GLRB;ENSG00000109738|ENST00000264428|GLRB nc|ENSG00000109738|P48167-2|GLRB nc|ENSG00000109738|P48167-2|GLRB MSMS UPN47_class_I_Rep_2 3 484.2066345214844 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 17.811 1 21.198 20.698 21.698 3.387 0 0 0 0.40738 1 1399 1399 0.79363 0 1 10192 1907 6288 6294 12709 12709 -0.08659680037703765 GFYPRPPRQ 9 Unmodified _GFYPRPPRQ_ 0 0 0 L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|53|2|sense L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|53|2|sense L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|53|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 559.2694702148438 2 559.298707 1116.58286 0.43093 0.00024102 -4.131 -0.0023105 -3.7001 -0.0020695 559.2967729238568 63.083 0.073139 66.593 66.547 66.62 3.5091 6 5 2 0 0 0 0.12182 1 14067 14067 5.2307 4.0373 1 23705 10193 8498 6289 6295 12710 12710 0.02923387148553047 GGAKHCPCLVK 11 Unmodified _GGAKHCPCLVK_ 0 0 0 REV__LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|9|2|sense REV__LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 556.7897338867188 2 556.788804 1111.56305 NaN NaN NaN NaN NaN NaN NaN 63.3 1 66.469 65.969 66.969 3.1698 0 0 0 0.38417 1 15066 15066 1.1933 0.39971 1 + 10194 30870 6290 6296 12711 12711 0.011735518219438745 GGDDSFNTFF 10 Unmodified _GGDDSFNTFF_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN47_class_I_Rep_1 2 553.7247924804688 2 553.724904 1105.43525 NaN NaN NaN NaN NaN NaN NaN 76.175 1 79.579 79.079 80.079 3.4034 0 0 0 0.53105 1 18837 18837 18.373 3.7914 1 10195 2425;4314 6291 6297 12712 12712 -0.11324593966742214 GGDDSFNTFF 10 Unmodified _GGDDSFNTFF_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 553.7247924804688 2 553.724904 1105.43525 0.46244 0.00025606 -0.0656 -3.6325E-05 0.39684 0.00021974 553.7248080778786 76.261 0.27773 79.582 79.54 79.818 3.3216 39 26 2 0 0 0 0.31093 1 18882 18882 29.841 17.309 1 185740 10196 2425;4314 6291 6297 12713 12713 -0.11324593966742214 GGDDSFNTFF 10 Unmodified _GGDDSFNTFF_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 553.7252197265625 2 553.724904 1105.43525 0.46462 0.00025727 -0.29102 -0.00016115 0.1736 9.6127E-05 553.7246891275087 76.551 0.15788 79.872 79.818 79.976 3.3216 20 14 2 0 0 0 0.55148 1 18951 18951 5.2969 0.066215 1 62723 10197 2425;4314 6291 6297 12714 12714 -0.11324593966742214 GGDNQLLLY 9 Unmodified _GGDNQLLLY_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS UPN47_class_I_Rep_1 2 496.7558898925781 2 496.756007 991.497461 NaN NaN NaN NaN NaN NaN NaN 57.724 1 61.161 60.661 61.661 3.437 0 0 0 0.096434 1 13275 13275 25.399 0 1 10198 2016 6292 6298 12715 12715 0.0013717717223471482 GGDNQLLLY 9 Unmodified _GGDNQLLLY_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS UPN47_class_I_Rep_1 2 496.7637634277344 2 496.756007 991.497461 NaN NaN NaN NaN NaN NaN NaN 57.733 1 61.17 60.67 61.67 3.437 0 0 0 0.10941 1 13278 13278 22.736 0 1 10199 2016 6292 6298 12716 12716 0.0013717717223471482 GGDNQLLLY 9 Unmodified _GGDNQLLLY_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS UPN47_class_I_Rep_2 3 496.7555236816406 2 496.756007 991.497461 NaN NaN NaN NaN NaN NaN NaN 58.197 1 61.479 60.979 61.979 3.2818 0 0 0 0.32573 1 13454 13454 9.3831 0 1 10200 2016 6292 6298 12717 12717 0.0013717717223471482 GGDNQLLLY 9 Unmodified _GGDNQLLLY_ 0 0 0 nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS UPN47_class_I_Rep_3 4 496.7554016113281 2 496.756007 991.497461 NaN NaN NaN NaN NaN NaN NaN 58.288 1 61.454 60.954 61.954 3.1658 0 0 0 0.15455 1 13533 13533 19.257 0 1 10201 2016 6292 6298 12718 12718 0.0013717717223471482 GGELDVQIYN 10 Unmodified _GGELDVQIYN_ 0 0 0 REV__ENSG00000166225|ENST00000549921|FRS2 REV__ENSG00000166225|ENST00000549921|FRS2 MULTI-MSMS UPN47_class_I_Rep_1 2 554.2684936523438 2 554.269478 1106.5244 0.40145 0.00022251 -0.07308 -4.0506E-05 0.32837 0.00018201 554.2693746069189 73.47 0.5197 76.856 76.556 77.076 3.3861 80 45 2 0 0 0 0.31951 3 18010 18010;18020;18058 27.223 6.8087 1 119790 + 10202 20160 6293 6299 12719;12720;12721 12719 -0.024597590072289677 GGELDVQIYN 10 Unmodified _GGELDVQIYN_ 0 0 0 REV__ENSG00000166225|ENST00000549921|FRS2 REV__ENSG00000166225|ENST00000549921|FRS2 MULTI-MSMS UPN47_class_I_Rep_2 3 554.269775390625 2 554.269478 1106.5244 0.43893 0.00024329 -0.18436 -0.00010219 0.25457 0.0001411 554.269358902843 73.599 0.56213 76.904 76.673 77.235 3.3048 88 51 2 0 0 0 0.31951 2 18096 18096;18132 27.223 6.8087 1 148620 + 10203 20160 6293 6299 12722;12723 12722 -0.024597590072289677 GGELDVQIYN 10 Unmodified _GGELDVQIYN_ 0 0 0 REV__ENSG00000166225|ENST00000549921|FRS2 REV__ENSG00000166225|ENST00000549921|FRS2 MULTI-MSMS UPN47_class_I_Rep_3 4 554.2698364257812 2 554.269478 1106.5244 0.45237 0.00025073 -0.36376 -0.00020162 0.088606 4.9111E-05 554.2692226454594 73.712 0.55019 76.948 76.614 77.164 3.2363 86 50 2 0 0 0 0.29911 3 18243 18169;18208;18243 33.445 13.03 1 110120 + 10204 20160 6293 6299 12724;12725;12726 12726 -0.024597590072289677 GGELDVQIYN 10 Unmodified _GGELDVQIYN_ 0 0 0 REV__ENSG00000166225|ENST00000549921|FRS2 REV__ENSG00000166225|ENST00000549921|FRS2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 554.269478 1106.5244 0.40145 0.00022251 -0.07308 -4.0506E-05 0.32837 0.00018201 554.2693746069189 73.47 0.5197 76.856 76.556 77.076 3.3861 -0.046935 0.00019398 NaN 33.445 80 45 2 NaN NaN NaN NaN 0 NaN NaN 0 119790 + 10205 20160 6293 6299 -0.024597590072289677 GGFVWACKNY 10 Unmodified _GGFVWACKNY_ 0 0 0 nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2 nc|ENSG00000182054|P48735-2|IDH2 nc|ENSG00000182054|P48735-2|IDH2 MSMS UPN47_class_I_Rep_3 4 572.7671508789062 2 572.765852 1143.51715 NaN NaN NaN NaN NaN NaN NaN 46.681 1 49.925 49.425 50.425 3.2439 0 0 0 0.53105 1 10009 10009 6.2058 0 1 10206 4932 6294 6300 12727 12727 -0.048867700886603416 GGGAPAPLPWG 11 Unmodified _GGGAPAPLPWG_ 0 0 0 ENST00000291442.3_1_19:17351565-17356474:-|nuORF ENST00000291442.3_1_19:17351565-17356474:-|nuORF ENST00000291442.3_1_19:17351565-17356474:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.2532043457031 2 490.253434 978.492316 -0.1116 -5.4714E-05 -0.45561 -0.00022336 -0.56722 -0.00027808 490.25313464200855 35 0.73789 38.426 38.196 38.934 3.4253 78 50 2 0 0 0 0.66945 1 6466 6466 1.4819 0.68827 1 102890 10207 6045 6295 6301 12728 12728 0.002209181002740479 GGGGPGCP 8 Unmodified _GGGGPGCP_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS UPN47_class_I_Rep_1 2 602.2442016601562 1 601.239872 600.232595 0.36709 0.00022071 -1.5522 -0.00093324 -1.1851 -0.00071253 601.2373539338795 68.416 0.43262 71.781 71.612 72.044 3.3646 47 33 2 0 0 0 0.82752 5 16487 16487;16490;16529;16545;16555 0 0 1 53231 + 10208 17662 6296 6302 12729;12730;12731;12732;12733 12729 -0.08351150782368677 GGGGPGCP 8 Unmodified _GGGGPGCP_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-SECPEP UPN47_class_I_Rep_1 2 601.2385864257812 1 601.239872 600.232595 0.36709 0.00022071 -1.5522 -0.00093324 -1.1851 -0.00071253 601.2373539338795 68.416 0.43262 71.781 71.612 72.044 3.3646 47 33 2 0 0 0 0.72333 1 16555 16555 0 0 1 53231 + 10209 17662 6296 6302 12734 12734 -0.08351150782368677 GGGGPGCP 8 Unmodified _GGGGPGCP_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 1 601.239872 600.232595 0.44724 0.0002689 2.3698 0.0014248 2.8171 0.0016937 601.2375683083176 68.866 0.15437 72.063 71.967 72.122 3.1977 0.14124 0.0022406 NaN 0 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 44890 + 10210 17662 6296 6302 -0.08351150782368677 GGHKPRNV 8 Unmodified _GGHKPRNV_ 0 0 0 MLT1D_dup14719|chr12:104621406-104621822:+|2.994136410158141|0.0080950815648635|8.53|151.0|3|1|sense MLT1D_dup14719|chr12:104621406-104621822:+|2.994136410158141|0.0080950815648635|8.53|151.0|3|1|sense MLT1D_dup14719|chr12:104621406-104621822:+|2.994136410158141|0.0080950815648635|8.53|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 432.7421569824219 2 432.743568 863.472583 NaN NaN NaN NaN NaN NaN NaN 84.232 1 84.232 83.732 84.732 0 0 0 0 0.40625 1 20030 20030 2.3027 0.24298 1 10211 16336 6297 6303 12735 12735 0.03538586880176808 GGHPTRNA 8 Unmodified _GGHPTRNA_ 0 0 0 REV__MLT1E1A_dup2432|chr11:76038632-76039105:+|2.06388721599364|0.008998074364083|7.84|151.0|9|2|sense REV__MLT1E1A_dup2432|chr11:76038632-76039105:+|2.06388721599364|0.008998074364083|7.84|151.0|9|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 405.227294921875 2 405.204276 808.393999 -0.61149 -0.00024778 -1.1852 -0.00048023 -1.7966 -0.000728 405.20370306153274 108.97 0.2447 112.51 112.43 112.68 3.5382 35 28 2 0 0 0 0.72333 1 26716 26716 0.79363 0 1 1603000 + 10212 31693 6298 6304 12736 12736 -0.017862654249256593 GGHPTRNA 8 Unmodified _GGHPTRNA_ 0 0 0 REV__MLT1E1A_dup2432|chr11:76038632-76039105:+|2.06388721599364|0.008998074364083|7.84|151.0|9|2|sense REV__MLT1E1A_dup2432|chr11:76038632-76039105:+|2.06388721599364|0.008998074364083|7.84|151.0|9|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 405.204276 808.393999 0.094692 3.8369E-05 -1.6279 -0.00065962 -1.5332 -0.00062125 405.2035297407482 109.09 0.1606 112.7 112.61 112.77 3.6046 0.11518 -0.00020774 NaN 0.79363 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1213800 + 10213 31693 6298 6304 -0.017862654249256593 GGIIWPEELF 10 Unmodified _GGIIWPEELF_ 0 0 0 REV__ENST00000358689.8_2_8:23288242-23288569:-|nuORF REV__ENST00000358689.8_2_8:23288242-23288569:-|nuORF MSMS UPN47_class_I_Rep_2 3 580.8040771484375 2 580.802957 1159.59136 NaN NaN NaN NaN NaN NaN NaN 58.77 1 62.052 61.552 62.552 3.2818 0 0 0 0.53105 1 13630 13630 1.8442 0.19162 1 + 10214 21883 6299 6305 12737 12737 0.017948962744867458 GGKGKGRR 8 Unmodified _GGKGKGRR_ 0 0 0 ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 408.2515563964844 2 408.25156 814.488568 0.05294 2.1613E-05 -0.14426 -5.8894E-05 -0.09132 -3.7282E-05 408.2514507969628 81.632 0.31783 81.632 81.383 81.701 0 46 29 2 0 0 0 0.82752 1 19293 19293 0 0 1 260640 10215 6705 6300 6306 12738 12738 0.07390293117066449 GGKGKGRR 8 Unmodified _GGKGKGRR_ 0 0 0 ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 408.25156 814.488568 -0.56179 -0.00022935 0.68682 0.00028039 0.12503 5.1043E-05 408.2517903522808 78.345 0.1313 81.688 81.602 81.733 3.3428 -0.080748 0.00053429 NaN 0 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 60578 10216 6705 6300 6306 0.07390293117066449 GGKGKGRR 8 Unmodified _GGKGKGRR_ 0 0 0 ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 408.25156 814.488568 -0.11477 -4.6854E-05 0.23269 9.4996E-05 0.11792 4.8142E-05 408.25159596240815 78.38 0.29024 81.902 81.798 82.088 3.5221 0.13357 0.0001635 NaN 0 53 35 2 NaN NaN NaN NaN 0 NaN NaN 0 223250 10217 6705 6300 6306 0.07390293117066449 GGKGKGRR 8 Unmodified _GGKGKGRR_ 0 0 0 ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 408.25156 814.488568 0.077058 3.1459E-05 0.016479 6.7276E-06 0.093537 3.8187E-05 408.2515101947085 78.138 0.37312 81.76 81.714 82.087 3.6223 -0.0084619 -1.3039E-05 NaN 0 77 43 2 NaN NaN NaN NaN 0 NaN NaN 0 151650 10218 6705 6300 6306 0.07390293117066449 GGKGKGRR 8 Unmodified _GGKGKGRR_ 0 0 0 ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 408.25156 814.488568 0.13699 5.5927E-05 0.0090821 3.7078E-06 0.14607 5.9635E-05 408.2515159185129 78.239 0.58884 81.861 81.504 82.093 3.6216 0.092356 -1.9079E-05 NaN 0 97 70 2 NaN NaN NaN NaN 0 NaN NaN 0 158830 10219 6705 6300 6306 0.07390293117066449 GGKINTNYTI 10 Unmodified _GGKINTNYTI_ 0 0 0 L1MB3_dup7683|chr8:55980755-55980990:-|2.244263107531969|0.0278263270056093|6.33|151.0|12|1|anti-sense L1MB3_dup7683|chr8:55980755-55980990:-|2.244263107531969|0.0278263270056093|6.33|151.0|12|1|anti-sense L1MB3_dup7683|chr8:55980755-55980990:-|2.244263107531969|0.0278263270056093|6.33|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.7881469726562 2 540.787838 1079.56112 0.39791 0.00021518 -0.64506 -0.00034884 -0.24715 -0.00013366 540.787834330351 57.24 0.27706 60.697 60.591 60.868 3.4572 42 26 2 0 0 0 0.55949 1 13160 13160 4.1895 1.1943 1 49930 10220 10454 6301 6307 12739 12739 0.024525376093151863 GGKQHVPF 8 Unmodified _GGKQHVPF_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2 REV__ENSG00000164082|ENST00000395052|GRM2 MSMS UPN48_class_I_Rep_1 5 435.2508850097656 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 70.268 1 73.727 73.227 74.227 3.4598 0 0 0 0.40604 1 16363 16363 2.5775 0 1 + 10221 20032 6302 6308 12740 12740 0.01604666274374722 GGKRHRRRQ 9 Unmodified _GGKRHRRRQ_ 0 0 0 REV__nc|ENSG00000177076|Q5QJU3-3|ACER2 REV__nc|ENSG00000177076|Q5QJU3-3|ACER2 MSMS UPN48_class_I_Rep_1 5 575.8428955078125 2 575.842471 1149.67039 NaN NaN NaN NaN NaN NaN NaN 83.453 1 87.04 86.54 87.54 3.5871 0 0 0 0.39518 1 19958 19958 1.8442 0 1 + 10222 32066 6303 6309 12741 12741 0.10154025862675553 GGKRLIII 8 Unmodified _GGKRLIII_ 0 0 0 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 MULTI-MSMS UPN47_class_I_Rep_1 2 435.3004455566406 2 435.300188 868.585822 0.024595 1.0706E-05 0.29108 0.00012671 0.31567 0.00013741 435.30028959465494 63.209 0.2233 66.569 66.444 66.668 3.3595 30 16 3 0 0 0 0.82752 1 14936 14936 0.69038 0 1 304280 10223 16709 6304 6310 12742 12742 0.14627262273381803 GGKRLIII 8 Unmodified _GGKRLIII_ 0 0 0 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 MULTI-MSMS UPN47_class_I_Rep_3 4 435.3003234863281 2 435.300188 868.585822 -0.43901 -0.0001911 0.63985 0.00027853 0.20084 8.7427E-05 435.30045706374216 62.748 0.32253 65.918 65.771 66.093 3.1698 28 16 2 0 0 0 0.82752 1 14920 14920 0.69038 0 1 481210 10224 16709 6304 6310 12743 12743 0.14627262273381803 GGKRLIII 8 Unmodified _GGKRLIII_ 0 0 0 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 435.300188 868.585822 0.024595 1.0706E-05 0.29108 0.00012671 0.31567 0.00013741 435.30028959465494 63.209 0.2233 66.569 66.444 66.668 3.3595 -0.064252 -0.00014485 NaN 0.69038 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 304280 10225 16709 6304 6310 0.14627262273381803 GGKRLIII 8 Unmodified _GGKRLIII_ 0 0 0 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 nc|ENSG00000148690|Q70Z53-3|FRA10AC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.15422 6.7133E-05 0.23837 0.00010376 0.39259 0.0001709 435.3002508114354 63.167 0.1846 66.676 66.547 66.731 3.5091 0.043374 -0.00019073 NaN 0.69038 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 479290 10226 16709 6304 6310 0.14627262273381803 GGKYCGHM 8 Unmodified _GGKYCGHM_ 0 0 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MSMS UPN46_class_I_Rep_3 1 426.6772766113281 2 426.678191 851.341828 NaN NaN NaN NaN NaN NaN NaN 60.937 1 60.937 60.437 61.437 0 0 0 0 0.40625 1 13538 13538 2.3027 1.5091 1 10227 3244 6305 6311 12744 12744 -0.0897888815453598 GGLHLPALEL 10 Unmodified _GGLHLPALEL_ 0 0 0 REV__Harlequin-int_dup68|chr1:206053001-206053902:+|13.344330994585224|0.4316687424735471|4.95|151.0|23|3|sense REV__Harlequin-int_dup68|chr1:206053001-206053902:+|13.344330994585224|0.4316687424735471|4.95|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 510.2978210449219 2 510.297842 1018.58113 NaN NaN NaN NaN NaN NaN NaN 63.294 1 66.755 66.255 67.255 3.4608 0 0 0 0.53105 1 14237 14237 7.2892 0.18751 1 + 10228 23522 6306 6312 12745 12745 0.07258333339939327 GGLHLWKY 8 Unmodified _GGLHLWKY_ 0 0 0 ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10 ENST00000492039.6_1_2:68352461-68384592:-|nuORF ENST00000492039.6_1_2:68352461-68384592:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 487.2665100097656 2 487.266345 972.518136 -0.07318 -3.5658E-05 0.045871 2.2352E-05 -0.027309 -1.3307E-05 487.2662576065727 43.025 1.044 46.383 45.976 47.02 3.358 105 70 2 0 0 0 0.82752 2 8906 8906;9002 2.5775 1.5091 1 115540 10229 5722 6307 6313 12746;12747 12746 0.03077812342564812 GGLKRWKF 8 Unmodified _GGLKRWKF_ 0 0 0 ENST00000465323.1_1_11:3143079-3150378:-|nuORF;ENST00000477622.1_1_11:3143079-3147843:-|nuORF ENST00000465323.1_1_11:3143079-3150378:-|nuORF ENST00000465323.1_1_11:3143079-3150378:-|nuORF MSMS UPN46_class_I_Rep_3 1 496.2958679199219 2 496.295436 990.57632 NaN NaN NaN NaN NaN NaN NaN 39.024 1 39.024 38.524 39.524 0 0 0 0 0.40404 1 7473 7473 5.2307 2.3415 1 10230 6890 6308 6314 12748 12748 0.0806549398784 GGNRLLALPA 10 Unmodified _GGNRLLALPA_ 0 0 0 ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B MULTI-MSMS UPN48_class_I_Rep_1 5 491.294921875 2 491.295633 980.576714 0.15678 7.7027E-05 0.32569 0.00016001 0.48248 0.00023704 491.2958083041463 107.58 0.097679 111.21 111.17 111.27 3.6313 18 11 2 0 0 0 0.44806 1 25936 25936 15.847 1.9411 1 1747300 10231 5545 6309 6315 12749 12749 0.08564868917028434 GGPFDLIMEL 10 Unmodified _GGPFDLIMEL_ 0 0 0 REV__MLT1D_dup20525|chr22:45153881-45154299:-|1.066128676378838|0.2209148176094325|2.27|151.0|2|1|sense REV__MLT1D_dup20525|chr22:45153881-45154299:-|1.066128676378838|0.2209148176094325|2.27|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 546.2772216796875 2 546.275718 1090.53688 NaN NaN NaN NaN NaN NaN NaN 24.931 1 28.413 27.913 28.913 3.483 0 0 0 0.53105 1 3385 3385 1.6526 0.85899 1 + 10232 31677 6310 6316 12750 12750 -0.004764388685543963 GGPGHEQE 8 Unmodified _GGPGHEQE_ 0 0 0 ENSG00000119547|ENST00000491143|ONECUT2;ENSG00000166233|ENST00000379887|ARIH1 ENSG00000119547|ENST00000491143|ONECUT2 ENSG00000119547|ENST00000491143|ONECUT2 MSMS UPN46_class_I_Rep_3 1 405.6725769042969 2 405.672474 809.330395 NaN NaN NaN NaN NaN NaN NaN 109.84 1 109.84 109.34 110.34 0 0 0 0 0.40625 1 27016 27016 2.3027 1.5091 1 10233 2283 6311 6317 12751 12751 -0.08189670652654968 GGPSELLNY 9 Unmodified _GGPSELLNY_ 0 0 0 MER21C_dup5031|chr19:19716981-19717734:-|1.0133429500930422|0.0472326150765876|4.42|151.0|14|2|sense MER21C_dup5031|chr19:19716981-19717734:-|1.0133429500930422|0.0472326150765876|4.42|151.0|14|2|sense MER21C_dup5031|chr19:19716981-19717734:-|1.0133429500930422|0.0472326150765876|4.42|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 475.23492431640625 2 475.234907 948.455261 0.19495 9.2648E-05 -0.42183 -0.00020047 -0.22687 -0.00010782 475.23461948536493 58.015 0.68851 61.307 61.008 61.696 3.2912 89 49 2 0 0 0 0.28552 1 13387 13387 14.838 0 1 226190 10234 15906 6312 6318 12752 12752 -0.021027982361488284 GGPWKVIF 8 Unmodified _GGPWKVIF_ 0 0 0 ENSG00000214897|ENST00000445091|PNMA6E ENSG00000214897|ENST00000445091|PNMA6E ENSG00000214897|ENST00000445091|PNMA6E MULTI-MSMS UPN48_class_I_Rep_3 7 452.2579650878906 2 452.257988 902.501424 0.066026 2.9861E-05 -0.17151 -7.7568E-05 -0.10549 -4.7707E-05 452.25775457674354 49.757 0.69672 53.378 53.073 53.769 3.621 70 46 2 0 0 0 0.82752 1 10061 10061 9.3474 9.3474 1 126960 10235 5625 6313 6319 12753 12753 0.0462731145661337 GGPWVRVSV 9 Unmodified _GGPWVRVSV_ 0 0 0 REV__ENST00000330619.12_1_19:57078901-57079174:+|nuORF REV__ENST00000330619.12_1_19:57078901-57079174:+|nuORF MSMS UPN47_class_I_Rep_3 4 478.7691345214844 2 478.769252 955.52395 NaN NaN NaN NaN NaN NaN NaN 27.532 1 30.874 30.374 31.374 3.3422 0 0 0 0.39428 1 4192 4192 2.0598 1.2661 1 + 10236 21775 6314 6320 12754 12754 0.0444091085423679 GGRELISQAF 10 Unmodified _GGRELISQAF_ 0 0 0 REV__nc|ENSG00000177302|Q13472-3|TOP3A REV__nc|ENSG00000177302|Q13472-3|TOP3A MSMS UPN46_class_I_Rep_3 1 539.2877807617188 2 539.288005 1076.56146 NaN NaN NaN NaN NaN NaN NaN 50.904 1 50.904 50.404 51.404 0 0 0 0 0.53105 1 10783 10783 15.248 0.8431 1 + 10237 20616 6315 6321 12755 12755 0.026239573292059504 GGRMFTFHYF 10 Unmodified _GGRMFTFHYF_ 0 0 0 REV__HAL1_dup13422|chrX:30563413-30564819:+|1.195994774416141|0.0167059111437625|6.16|151.0|74|2|anti-sense REV__HAL1_dup13422|chrX:30563413-30564819:+|1.195994774416141|0.0167059111437625|6.16|151.0|74|2|anti-sense MSMS UPN48_class_I_Rep_1 5 631.791259765625 2 631.792401 1261.57025 NaN NaN NaN NaN NaN NaN NaN 39.635 1 43.14 42.64 43.64 3.5048 0 0 0 0.53105 1 7022 7022 1.6526 0.32309 1 + 10238 23350 6316 6322 12756 12756 -0.05007392305992653 GGRRLRPGPP 10 Unmodified _GGRRLRPGPP_ 0 0 0 ENST00000261918.8_1_15:74711256-74726287:-|nuORF ENST00000261918.8_1_15:74711256-74726287:-|nuORF ENST00000261918.8_1_15:74711256-74726287:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 531.8173217773438 2 531.817599 1061.62064 0.45898 0.00024409 -0.80226 -0.00042666 -0.34329 -0.00018257 531.8171459314098 91.869 0.26964 95.575 95.459 95.729 3.7053 44 33 2 0 0 0 0.53654 1 22910 22910 7.2892 2.96 1 179610 10239 5962 6317 6323 12757 12757 0.09229898134049108 GGTFGSAHVF 10 Unmodified _GGTFGSAHVF_ 0 0 0 REV__ENST00000547490.1_1_12:53700445-53700930:+|nuORF REV__ENST00000547490.1_1_12:53700445-53700930:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.2351379394531 2 490.235242 978.45593 -0.11176 -5.4787E-05 0.070026 3.4329E-05 -0.041732 -2.0458E-05 490.2352114941017 38.057 0.8071 41.444 41.121 41.928 3.3879 114 65 2 0 0 0 0.44806 1 7343 7343 15.847 1.2655 1 108520 + 10240 19317 6318 6324 12758 12758 -0.03415958796426821 GGTFGSAHVF 10 Unmodified _GGTFGSAHVF_ 0 0 0 REV__ENST00000547490.1_1_12:53700445-53700930:+|nuORF REV__ENST00000547490.1_1_12:53700445-53700930:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.2350158691406 2 490.235242 978.45593 -0.30909 -0.00015153 0.24929 0.00012221 -0.059798 -2.9315E-05 490.23531441859564 38.265 0.98372 41.507 41.133 42.117 3.2414 90 74 2 0 0 0 0.54078 2 7497 7497;7544 6.7232 1.4925 1 98333 + 10241 19317 6318 6324 12759;12760 12759 -0.03415958796426821 GGTFGSAHVF 10 Unmodified _GGTFGSAHVF_ 0 0 0 REV__ENST00000547490.1_1_12:53700445-53700930:+|nuORF REV__ENST00000547490.1_1_12:53700445-53700930:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 490.235242 978.45593 -0.30909 -0.00015153 0.24929 0.00012221 -0.059798 -2.9315E-05 490.23531441859564 38.265 0.98372 41.507 41.133 42.117 3.2414 0.036681 -1.5039E-05 NaN 15.847 90 74 2 NaN NaN NaN NaN 0 NaN NaN 0 98333 + 10242 19317 6318 6324 -0.03415958796426821 GGVGSTQFELP 11 Unmodified _GGVGSTQFELP_ 0 0 0 L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|300|2|anti-sense L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|300|2|anti-sense L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|300|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.2720947265625 2 546.272021 1090.52949 0.51829 0.00028312 -0.28118 -0.0001536 0.23711 0.00012953 546.7729296997862 51.826 0.1688 55.031 54.968 55.137 3.2055 13 8 2 0 0 0 0.67398 1 11589 11589 1.0715 0 1 43300 10243 14535 6319 6325 12761 12761 -0.01215455144642874 GGVLPNIQAV 10 Unmodified _GGVLPNIQAV_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MSMS UPN46_class_I_Rep_3 1 484.2833557128906 2 484.282192 966.549831 NaN NaN NaN NaN NaN NaN NaN 71.099 1 71.099 70.599 71.599 0 0 0 0 0.53105 1 16366 16366 6.2058 0.97511 1 10244 4893 6320 6326 12762 12762 0.06521760305861335 GGVRHYKTI 9 Unmodified _GGVRHYKTI_ 0 0 0 REV__MLT1B_dup13334|chr12:104497135-104497537:+|3.346559706096082|0.0648741006932418|5.69|151.0|21|3|anti-sense REV__MLT1B_dup13334|chr12:104497135-104497537:+|3.346559706096082|0.0648741006932418|5.69|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.7927856445312 2 515.793258 1029.57196 0.11524 5.9441E-05 -1.158 -0.00059726 -1.0427 -0.00053782 515.7923234782736 46.103 0.41465 49.347 49.089 49.503 3.2441 38 23 2 0 0 0 0.43153 1 9852 9852 6.2058 0.47393 1 62063 + 10245 31617 6321 6327 12763 12763 0.05835984774262215 GGWKCKWYS 9 Unmodified _GGWKCKWYS_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|5|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|5|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|5|intron MSMS UPN47_class_I_Rep_2 3 557.7630004882812 2 557.760569 1113.50659 NaN NaN NaN NaN NaN NaN NaN 31.616 1 35.085 34.585 35.585 3.4691 0 0 0 0.39428 1 5375 5375 2.0598 0.21551 1 10246 943 6322 6328 12764 12764 -0.045627527430951886 GGWRRWRRRRG 11 Unmodified _GGWRRWRRRRG_ 0 0 0 ENST00000457928.6_1_3:176816297-176915038:-|nuORF ENST00000457928.6_1_3:176816297-176915038:-|nuORF ENST00000457928.6_1_3:176816297-176915038:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 500.3131103515625 3 500.287359 1497.84025 -0.32485 -0.00016252 -2.1026 -0.0010519 -2.4274 -0.0012144 500.2865338286881 13.979 0.22042 17.436 17.323 17.543 3.457 46 25 2 0 0 0 22.551 1 473 473 0.45452 0.35968 1 76133 10247 6842 6323 6329 12765 12765 0.11124141865093407 GGWWCHCL 8 Unmodified _GGWWCHCL_ 0 0 0 ENST00000563693.1_1_16:31153020-31154169:-|nuORF;nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36 ENST00000563693.1_1_16:31153020-31154169:-|nuORF ENST00000563693.1_1_16:31153020-31154169:-|nuORF MSMS UPN48_class_I_Rep_2 6 481.1929931640625 2 481.194008 960.373463 NaN NaN NaN NaN NaN NaN NaN 46.534 1 50.283 49.783 50.783 3.7494 0 0 0 0.40738 1 9104 9104 0.79363 0 1 10248 4819 6324 6330 12766 12766 -0.10830895400590634 GGWWCHCL 8 Unmodified _GGWWCHCL_ 0 0 0 ENST00000563693.1_1_16:31153020-31154169:-|nuORF;nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36 ENST00000563693.1_1_16:31153020-31154169:-|nuORF ENST00000563693.1_1_16:31153020-31154169:-|nuORF MSMS UPN48_class_I_Rep_3 7 481.19329833984375 2 481.194008 960.373463 NaN NaN NaN NaN NaN NaN NaN 46.624 1 50.261 49.761 50.761 3.6363 0 0 0 0.40738 1 9063 9063 0.79363 0 1 10249 4819 6324 6330 12767 12767 -0.10830895400590634 GGYVLPVVATY 11 Unmodified _GGYVLPVVATY_ 0 0 0 REV__ENSG00000132465|ENST00000254801|JCHAIN REV__ENSG00000132465|ENST00000254801|JCHAIN MSMS UPN48_class_I_Rep_3 7 569.809814453125 2 569.810782 1137.60701 NaN NaN NaN NaN NaN NaN NaN 27.822 1 31.578 31.078 32.078 3.7555 0 0 0 0.38417 1 3702 3702 1.1933 0.12188 1 + 10250 19018 6325 6331 12768 12768 0.04371182791578576 GHAKRKHF 8 Unmodified _GHAKRKHF_ 0 0 0 REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF MSMS UPN48_class_I_Rep_2 6 490.7806701660156 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 19.439 1 23.089 22.589 23.589 3.6497 0 0 0 0.40738 1 1482 1482 0.79363 0 1 + 10251 18572 6326 6332 12769 12769 0.05582555042508375 GHEYYPSY 8 Unmodified _GHEYYPSY_ 0 0 0 L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|95|1|anti-sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|95|1|anti-sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|95|1|anti-sense MSMS UPN48_class_I_Rep_1 5 508.2119445800781 2 508.211432 1014.40831 NaN NaN NaN NaN NaN NaN NaN 31.81 1 35.344 34.844 35.844 3.5342 0 0 0 0.40604 1 4753 4753 2.5775 0 1 10252 11052 6327 6333 12770 12770 -0.09831657787287895 GHFMFFFFF 9 Unmodified _GHFMFFFFF_ 0 0 0 REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|160|3|anti-sense REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|160|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 613.7791137695312 2 613.778231 1225.54191 0.048336 2.9668E-05 0.71688 0.00044 0.76521 0.00046967 613.778709638 12.771 0.21787 16.16 16.074 16.291 3.388 40 24 2 0 0 0 0.50015 1 144 144 0.6015 0 1 60398 + 10253 30496 6328 6334 12771 12771 -0.06184090215288052 GHGSHFMK 8 Unmodified _GHGSHFMK_ 0 0 0 REV__LTR53-int_dup28|chr2:230173382-230174723:+|1.1446474181394155|0.2805862569630898|2.03|151.0|19|2|sense REV__LTR53-int_dup28|chr2:230173382-230174723:+|1.1446474181394155|0.2805862569630898|2.03|151.0|19|2|sense MSMS UPN47_class_I_Rep_1 2 450.7601013183594 2 450.710879 899.407206 NaN NaN NaN NaN NaN NaN NaN 118.68 1 122.29 121.79 122.79 3.6036 0 0 0 0.40746 1 29461 29461 0.69038 0.088878 1 + 10254 30971 6329 6335 12772 12772 -0.04652150637173236 GHGSWDDK 8 Unmodified _GHGSWDDK_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MSMS UPN47_class_I_Rep_1 2 451.2627868652344 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 118.71 1 122.32 121.82 122.82 3.6036 0 0 0 0.40746 1 29469 29469 0.69038 0 1 + 10255 20389 6330 6336 12773 12773 -0.08157695244290153 GHHCPHLIHMP 11 Unmodified _GHHCPHLIHMP_ 0 0 0 REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|278|3|anti-sense REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|278|3|anti-sense MSMS UPN47_class_I_Rep_3 4 639.80224609375 2 639.802777 1277.591 NaN NaN NaN NaN NaN NaN NaN 61.536 1 64.703 64.203 65.203 3.1667 0 0 0 0.38417 1 14524 14524 1.4819 0.15237 1 + 10256 23864 6331 6337 12774 12774 -0.03669125197984613 GHHHVQRAET 10 Unmodified _GHHHVQRAET_ 0 0 0 REV__ENST00000400454.5_1_21:41414428-41416141:-|nuORF REV__ENST00000400454.5_1_21:41414428-41416141:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.2872314453125 2 586.289402 1170.56425 NaN NaN NaN NaN NaN NaN NaN 25.807 1 29.374 28.874 29.874 3.5667 0 0 0 0.53105 1 3064 3064 1.8442 1.0506 1 + 10257 22155 6332 6338 12775 12775 -0.014207744932946298 GHIKKKQQE 9 Unmodified _GHIKKKQQE_ 0 0 0 ENST00000498143.5_1_10:75335935-75336040:-|nuORF ENST00000498143.5_1_10:75335935-75336040:-|nuORF ENST00000498143.5_1_10:75335935-75336040:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 548.8352661132812 2 548.317097 1094.61964 0.44124 0.00024194 2.6669 0.0014623 3.1082 0.0017043 548.3179269751192 108.7 0.12696 112.38 112.33 112.46 3.6751 16 12 2 0 0 0 0.36392 1 25759 25759 10.074 1.9184 1 14620000 10258 7116 6333 6339 12776 12776 0.07611638974481139 GHIKKKQQE 9 Unmodified _GHIKKKQQE_ 0 0 0 ENST00000498143.5_1_10:75335935-75336040:-|nuORF ENST00000498143.5_1_10:75335935-75336040:-|nuORF ENST00000498143.5_1_10:75335935-75336040:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 548.317097 1094.61964 0.48829 0.00026774 2.3706 0.0012998 2.8589 0.0015676 548.3177803464217 108.72 0.12745 112.4 112.33 112.45 3.6746 0.031051 -0.00038969 NaN 10.074 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 15545000 10259 7116 6333 6339 0.07611638974481139 GHLDCFSPSAI 11 Unmodified _GHLDCFSPSAI_ 0 0 0 L1MC5a_dup1444|chr2:47879128-47879614:-|1.8484557110575184|0.0124993660417047|7.21|151.0|25|2|anti-sense L1MC5a_dup1444|chr2:47879128-47879614:-|1.8484557110575184|0.0124993660417047|7.21|151.0|25|2|anti-sense L1MC5a_dup1444|chr2:47879128-47879614:-|1.8484557110575184|0.0124993660417047|7.21|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.7674560546875 2 573.766049 1145.51754 NaN NaN NaN NaN NaN NaN NaN 13.265 1 16.639 16.139 17.139 3.3734 0 0 0 0.38417 1 278 278 1.1933 0.50296 1 10260 11720 6334 6340 12777 12777 -0.04939395159453852 GHLHHKEWR 9 Unmodified _GHLHHKEWR_ 0 0 0 REV__ENST00000567700.5_1_16:1832933-1836988:+|nuORF REV__ENST00000567700.5_1_16:1832933-1836988:+|nuORF MSMS UPN48_class_I_Rep_2 6 600.0621948242188 2 600.312681 1198.61081 NaN NaN NaN NaN NaN NaN NaN 36.484 1 40.186 39.686 40.686 3.7021 0 0 0 0.40038 1 6136 6136 0.6015 0.076735 1 + 10261 23071 6335 6341 12778 12778 0.019447101286232282 GHLHHKEWR 9 Unmodified _GHLHHKEWR_ 0 0 0 REV__ENST00000567700.5_1_16:1832933-1836988:+|nuORF REV__ENST00000567700.5_1_16:1832933-1836988:+|nuORF MSMS UPN48_class_I_Rep_2 6 600.0625610351562 2 600.312681 1198.61081 NaN NaN NaN NaN NaN NaN NaN 36.961 1 40.664 40.164 41.164 3.7021 0 0 0 0.40038 1 6270 6270 0.6015 0.076735 1 + 10262 23071 6335 6341 12779 12779 0.019447101286232282 GHLHHRVRV 9 Unmodified _GHLHHRVRV_ 0 0 0 ENST00000532940.5_1_8:144921262-144922356:-|nuORF ENST00000532940.5_1_8:144921262-144922356:-|nuORF ENST00000532940.5_1_8:144921262-144922356:-|nuORF MSMS UPN48_class_I_Rep_2 6 555.8214721679688 2 555.823215 1109.63188 NaN NaN NaN NaN NaN NaN NaN 96.652 1 100.43 99.933 100.93 3.7804 0 0 0 0.39428 1 22962 22962 2.0598 0.21551 1 10263 7306 6336 6342 12780 12780 0.0814472022816517 GHLPDASQRSP 11 Unmodified _GHLPDASQRSP_ 0 0 0 L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|255|1|anti-sense L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|255|1|anti-sense L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|255|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.78955078125 2 582.791444 1163.56833 0.063354 3.6922E-05 -0.45073 -0.00026268 -0.38738 -0.00022576 582.791191213256 43.963 0.70819 47.658 47.371 48.079 3.6951 82 45 2 0 0 0 0.65559 1 9218 9218 2.7352 0 1 153210 10264 14759 6337 6343 12781 12781 -0.0069072979026714165 GHLYIWHAI 9 Unmodified _GHLYIWHAI_ 0 0 0 ENST00000582618.1_1_18:21948255-21957497:-|nuORF ENST00000582618.1_1_18:21948255-21957497:-|nuORF ENST00000582618.1_1_18:21948255-21957497:-|nuORF MSMS UPN47_class_I_Rep_2 3 555.2998046875 2 555.298176 1108.5818 NaN NaN NaN NaN NaN NaN NaN 83.539 1 86.95 86.45 87.45 3.4116 0 0 0 0.39326 1 20826 20826 2.3027 0.24298 1 10265 7563 6338 6344 12782 12782 0.031851727796492924 GHPINAKVKR 10 Unmodified _GHPINAKVKR_ 0 0 0 HERVK22-int_dup147|chr7:107387678-107389267:+|1.232153008103398|0.0166376856349242|6.21|151.0|98|3|anti-sense;HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|270|3|anti-sense HERVK22-int_dup147|chr7:107387678-107389267:+|1.232153008103398|0.0166376856349242|6.21|151.0|98|3|anti-sense HERVK22-int_dup147|chr7:107387678-107389267:+|1.232153008103398|0.0166376856349242|6.21|151.0|98|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.3394165039062 2 560.340907 1118.66726 0.50357 0.00028217 -0.48872 -0.00027385 0.014849 8.3203E-06 560.3407124150199 94.872 0.2298 98.279 98.177 98.406 3.4068 49 32 2 0 0 0 0.56333 1 23592 23592 1.4819 0 1 211370 10266 8282 6339 6345 12783 12783 0.11267337965318802 GHQFFLAF 8 Unmodified _GHQFFLAF_ 0 0 0 MLT2B4_dup3751|chr15:50094055-50094462:+|1.0043990275583294|0.001284426073101|9.61|148.0|4|1|sense MLT2B4_dup3751|chr15:50094055-50094462:+|1.0043990275583294|0.001284426073101|9.61|148.0|4|1|sense MLT2B4_dup3751|chr15:50094055-50094462:+|1.0043990275583294|0.001284426073101|9.61|148.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.26373291015625 2 483.745245 965.475937 0.16657 8.0579E-05 -0.53077 -0.00025676 -0.3642 -0.00017618 483.74481091234304 44.171 0.81085 47.933 47.634 48.445 3.7617 97 58 2 0 0 0 0.82752 1 8389 8389 19.439 4.8573 1 203740 10267 16512 6340 6346 12784 12784 -0.008181630658327776 GHQLYLAHGPF 11 Unmodified _GHQLYLAHGPF_ 0 0 0 MLT1D_dup12446|chr10:11304028-11304386:-|1.356324635675553|0.010734397619971|6.98|151.0|21|3|anti-sense MLT1D_dup12446|chr10:11304028-11304386:-|1.356324635675553|0.010734397619971|6.98|151.0|21|3|anti-sense MLT1D_dup12446|chr10:11304028-11304386:-|1.356324635675553|0.010734397619971|6.98|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3173828125 2 620.317097 1238.61964 NaN NaN NaN NaN NaN NaN NaN 38.412 1 42.128 41.628 42.628 3.7164 0 0 0 0.38417 1 6692 6692 3.2813 0.97858 1 10268 16327 6341 6347 12785 12785 0.00987638974447691 GHQPQWWR 8 Unmodified _GHQPQWWR_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MSMS UPN48_class_I_Rep_2 6 547.7695922851562 2 547.767575 1093.5206 NaN NaN NaN NaN NaN NaN NaN 21.721 1 25.367 24.867 25.867 3.6459 0 0 0 0.40604 1 2102 2102 2.5775 0 1 + 10269 20995 6342 6348 12786 12786 -0.02242339199779053 GHRIHRRV 8 Unmodified _GHRIHRRV_ 0 0 0 REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY MULTI-SECPEP UPN48_class_I_Rep_3 7 515.292236328125 2 515.810108 1029.60566 0.38936 0.00020083 -0.93553 -0.00048255 -0.54617 -0.00028172 515.8094747140867 66.873 0.12054 70.381 70.31 70.43 3.5077 7 5 2 0 0 0 0.72333 1 15203 15203 2.3027 1.6124 1 27584 + 10270 19077 6343 6349 12787 12787 0.09204451056689322 GHRIHRRV 8 Unmodified _GHRIHRRV_ 0 0 0 REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY MULTI-MATCH UPN47_class_I_Rep_3 4 2 515.810108 1029.60566 0.27827 0.00014354 -3.423 -0.0017656 -3.1447 -0.0016221 515.8057796245715 67.345 0.040161 70.536 70.506 70.546 3.1914 0.077883 -0.0024717 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 20556 + 10271 19077 6343 6349 0.09204451056689322 GHRRAFGA 8 Unmodified _GHRRAFGA_ 0 0 0 REV__HERV15-int_dup73|chr16:20676237-20676920:+|1.1053986293450029|0.2454077319232865|2.17|146.0|16|2|sense REV__HERV15-int_dup73|chr16:20676237-20676920:+|1.1053986293450029|0.2454077319232865|2.17|146.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 435.7514343261719 2 436.23591 870.457268 NaN NaN NaN NaN NaN NaN NaN 75.519 1 79.019 78.519 79.519 3.4996 0 0 0 0.40738 1 17895 17895 0.79363 0.10326 1 + 10272 23542 6344 6350 12788 12788 0.016857200829804242 GHRVKFHLK 9 Unmodified _GHRVKFHLK_ 0 0 0 AluSx1_dup104075|chr19:7414836-7415023:+|1.4413419365140852|0.0055788391334742|8.01|151.0|2|1|sense AluSx1_dup104075|chr19:7414836-7415023:+|1.4413419365140852|0.0055788391334742|8.01|151.0|2|1|sense AluSx1_dup104075|chr19:7414836-7415023:+|1.4413419365140852|0.0055788391334742|8.01|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 561.3402099609375 2 561.338167 1120.66178 NaN NaN NaN NaN NaN NaN NaN 76.742 1 80.252 79.752 80.752 3.5102 0 0 0 0.39428 1 18233 18233 2.0598 0.57785 1 10273 308 6345 6351 12789 12789 0.10627659173496795 GHSGASPCVS 10 Unmodified _GHSGASPCVS_ 0 0 0 REV__ENST00000401878.7_2_7:155569363-155569612:+|nuORF REV__ENST00000401878.7_2_7:155569363-155569612:+|nuORF MSMS UPN48_class_I_Rep_3 7 451.1937255859375 2 451.195259 900.375965 NaN NaN NaN NaN NaN NaN NaN 45.276 1 48.913 48.413 49.413 3.6372 0 0 0 0.53105 1 8651 8651 1.4819 0.68827 1 + 10274 22162 6346 6352 12790 12790 -0.07820768461931493 GHTGYFYFW 9 Unmodified _GHTGYFYFW_ 0 0 0 ENSG00000108021.20,TASOR2,chr10,+,I7.1,5714575,5717658|83|7.31|1|intron ENSG00000108021.20,TASOR2,chr10,+,I7.1,5714575,5717658|83|7.31|1|intron ENSG00000108021.20,TASOR2,chr10,+,I7.1,5714575,5717658|83|7.31|1|intron MSMS UPN47_class_I_Rep_2 3 589.2606811523438 2 589.258717 1176.50288 NaN NaN NaN NaN NaN NaN NaN 41.683 1 45.049 44.549 45.549 3.3655 0 0 0 0.40038 1 8424 8424 0.6015 0.14316 1 10275 1851 6347 6353 12791 12791 -0.07831099245299811 GHTTPHCKFY 10 Unmodified _GHTTPHCKFY_ 0 0 0 AluJr_dup7146|chr1:247205722-247206010:+|1.2048377734520217|0.235128192116859|2.36|151.0|20|3|anti-sense AluJr_dup7146|chr1:247205722-247206010:+|1.2048377734520217|0.235128192116859|2.36|151.0|20|3|anti-sense AluJr_dup7146|chr1:247205722-247206010:+|1.2048377734520217|0.235128192116859|2.36|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_1 2 595.7736206054688 2 595.774208 1189.53386 NaN NaN NaN NaN NaN NaN NaN 70.9 1 74.272 73.772 74.772 3.3713 0 0 0 0.53105 1 17256 17256 9.3831 2.66 1 10276 177 6348 6354 12792 12792 -0.05332269202722273 GHVLHRGMAR 10 Unmodified _GHVLHRGMAR_ 0 0 0 REV__HERVIP10F-int_dup214|chr15:34155232-34159369:-|3.730186243385989|0.0946228886065392|5.3|151.0|248|3|anti-sense REV__HERVIP10F-int_dup214|chr15:34155232-34159369:-|3.730186243385989|0.0946228886065392|5.3|151.0|248|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 567.3097534179688 2 567.309084 1132.60361 0.37667 0.00021369 0.52223 0.00029627 0.8989 0.00050996 567.8108036205208 65.304 0.16356 68.559 68.409 68.573 3.2556 16 12 2 0 0 0 0.84575 1 15574 15574 1.6526 0 1 46901 + 10277 23754 6349 6355 12793 12793 0.04261654256561087 GHYGPLLF 8 Unmodified _GHYGPLLF_ 0 0 0 REV__ENST00000602377.1_1_16:67708740-67708896:-|nuORF REV__ENST00000602377.1_1_16:67708740-67708896:-|nuORF MSMS UPN46_class_I_Rep_3 1 452.2407531738281 2 452.239796 902.465038 NaN NaN NaN NaN NaN NaN NaN 85.073 1 85.073 84.573 85.573 0 0 0 0 0.40738 1 20276 20276 0.79363 0 1 + 10278 23217 6350 6356 12794 12794 0.009904345599125008 GIALFTSGFL 10 Unmodified _GIALFTSGFL_ 0 0 0 ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO ENST00000465745.6_1_9:35094156-35095562:-|nuORF ENST00000465745.6_1_9:35094156-35095562:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 513.2872924804688 2 513.286943 1024.55933 0.27963 0.00014353 0.12471 6.4014E-05 0.40434 0.00020754 513.2870380731445 71.791 0.16668 71.791 71.739 71.906 0 18 12 2 0 0 0 0.48573 1 16558 16558 13.042 3.6593 1 182120 10279 4172 6351 6357 12795 12795 0.04803528591401118 GIALFTSGFL 10 Unmodified _GIALFTSGFL_ 0 0 0 ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO ENST00000465745.6_1_9:35094156-35095562:-|nuORF ENST00000465745.6_1_9:35094156-35095562:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.2874145507812 2 513.286943 1024.55933 0.26764 0.00013738 0.11512 5.9087E-05 0.38276 0.00019646 513.2869250921092 66.35 0.36931 69.535 69.253 69.622 3.1853 78 27 4 0 0 0 0.52083 1 15939 15939 9.3831 0 1 626290 10280 4172 6351 6357 12796 12796 0.04803528591401118 GIATIFFFYY 10 Unmodified _GIATIFFFYY_ 0 0 0 L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|164|3|anti-sense L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|164|3|anti-sense L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|164|3|anti-sense MSMS UPN47_class_I_Rep_2 3 621.3129272460938 2 621.3157 1240.61685 NaN NaN NaN NaN NaN NaN NaN 62.438 1 65.697 65.197 66.197 3.2594 0 0 0 0.53105 1 14745 14745 10.824 0.75 1 10281 12055 6352 6358 12797 12797 0.006163707969562893 GIDRPAEL 8 Unmodified _GIDRPAEL_ 0 0 0 ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1 ENST00000592188.1_1_19:19387459-19391209:-|nuORF ENST00000592188.1_1_19:19387459-19391209:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.7371520996094 2 435.737617 869.460681 -0.75617 -0.00032949 0.22799 9.9342E-05 -0.52818 -0.00023015 435.7376197879001 35.29 0.73929 38.715 38.494 39.233 3.4253 67 46 2 0 0 0 0.82752 1 6488 6488 13.906 3.0821 1 115230 10282 1754 6353 6359 12798 12798 0.020729253463287023 GIDRPAEL 8 Unmodified _GIDRPAEL_ 0 0 0 ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1 ENST00000592188.1_1_19:19387459-19391209:-|nuORF ENST00000592188.1_1_19:19387459-19391209:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.7371826171875 2 435.737617 869.460681 -0.945 -0.00041177 0.3149 0.00013721 -0.6301 -0.00027456 435.73769669617354 35.475 0.74384 38.73 38.484 39.228 3.2547 80 51 2 0 0 0 0.82752 1 6581 6581 24.021 7.0783 1 136740 10283 1754 6353 6359 12799 12799 0.020729253463287023 GIDSRYFDLY 10 Unmodified _GIDSRYFDLY_ 0 0 0 ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A ENST00000568515.1_1_15:66007788-66048788:-|nuORF ENST00000568515.1_1_15:66007788-66048788:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 625.288330078125 2 624.798403 1247.58225 0.40603 0.00025369 -0.029078 -1.8168E-05 0.37695 0.00023552 624.7982457458506 65.573 0.6855 68.928 68.64 69.325 3.3557 50 37 2 0 0 0 0.47804 1 15697 15697 13.615 4.2317 1 126670 10284 4684 6354 6360 12800 12800 -0.03163497081800415 GIDSRYFDLY 10 Unmodified _GIDSRYFDLY_ 0 0 0 ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A ENST00000568515.1_1_15:66007788-66048788:-|nuORF ENST00000568515.1_1_15:66007788-66048788:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 625.2880249023438 2 624.798403 1247.58225 0.44291 0.00027673 0.14794 9.2435E-05 0.59085 0.00036916 624.7982359281599 65.825 0.57098 69.01 68.749 69.32 3.1853 51 33 2 0 0 0 0.48801 1 15890 15890 12.873 5.7709 1 118970 10285 4684 6354 6360 12801 12801 -0.03163497081800415 GIEIEQPRN 9 Unmodified _GIEIEQPRN_ 0 0 0 REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22 REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22 MULTI-MSMS UPN46_class_I_Rep_3 1 528.2578125 2 528.277638 1054.54072 0.19927 0.00010527 -0.1135 -5.9959E-05 0.085771 4.5311E-05 528.2775731867647 35.745 0.5162 35.745 35.455 35.971 0 54 34 2 0 0 0 0.47197 1 6606 6606 3.5965 0.31518 1 110420 + 10286 20209 6355 6361 12802 12802 0.015633669495173308 GIEKNTYNLL 10 Unmodified _GIEKNTYNLL_ 0 0 0 L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|8|1|sense L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|8|1|sense L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.8169555664062 2 582.816596 1163.61864 0.48289 0.00028143 0.063372 3.6935E-05 0.54626 0.00031837 582.8166383921211 68.973 0.48174 72.495 72.347 72.829 3.5216 58 35 3 0 0 0 0.55949 1 15971 15971 4.1895 0.24511 1 279040 10287 9941 6356 6362 12803 12803 0.04337379814887754 GIELSSCAGCF 11 Unmodified _GIELSSCAGCF_ 0 0 0 REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 544.2342529296875 2 543.73336 1085.45217 0.27198 0.00014788 -0.38108 -0.00020721 -0.1091 -5.9323E-05 543.7330595648399 49.799 0.58228 53.459 53.229 53.811 3.6592 54 33 2 0 0 0 0.30462 2 10914 10866;10914 15.248 7.9593 1 85937 + 10288 21936 6357 6363 12804;12805 12805 -0.08714132676823283 GIELSSCAGCF 11 Unmodified _GIELSSCAGCF_ 0 0 0 REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 544.2508544921875 2 543.73336 1085.45217 0.27198 0.00014788 -0.38108 -0.00020721 -0.1091 -5.9323E-05 543.7330595648399 49.799 0.58228 53.459 53.229 53.811 3.6592 54 33 2 0 0 0 22.551 1 10885 10885 15.248 7.093 1 85937 + 10289 21936 6357 6363 12806 12806 -0.08714132676823283 GIELSSCAGCF 11 Unmodified _GIELSSCAGCF_ 0 0 0 REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 543.7321166992188 2 543.73336 1085.45217 0.40584 0.00022067 -0.39665 -0.00021567 0.0091831 4.9932E-06 543.7330775001052 50.092 0.51394 53.435 53.219 53.733 3.3431 45 25 2 0 0 0 0.30462 1 11007 11007 15.248 5.0651 1 81666 + 10290 21936 6357 6363 12807 12807 -0.08714132676823283 GIELSSCAGCF 11 Unmodified _GIELSSCAGCF_ 0 0 0 REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 543.7332153320312 2 543.73336 1085.45217 0.47795 0.00025988 -0.57826 -0.00031442 -0.10031 -5.4541E-05 543.7329093994653 50.144 0.54201 53.37 53.168 53.71 3.2262 48 29 2 0 0 0 0.2728 3 11074 11023;11074;11081 20.415 10.231 1 150590 + 10291 21936 6357 6363 12808;12809;12810 12809 -0.08714132676823283 GIELSSCAGCF 11 Unmodified _GIELSSCAGCF_ 0 0 0 REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF REV__ENST00000367993.7_1_1:161184008-161184149:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 543.73336 1085.45217 0.47795 0.00025988 -0.57826 -0.00031442 -0.10031 -5.4541E-05 543.7329093994653 50.144 0.54201 53.37 53.168 53.71 3.2262 -0.051143 -0.00012481 NaN 20.415 48 29 2 NaN NaN NaN NaN 0 NaN NaN 0 150590 + 10292 21936 6357 6363 -0.08714132676823283 GIETIANEF 9 Unmodified _GIETIANEF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS UPN46_class_I_Rep_3 1 497.2480163574219 2 497.248015 992.481476 0.2629 0.00013073 -0.092081 -4.5787E-05 0.17082 8.494E-05 497.24795615217926 70.824 0.4206 70.824 70.611 71.031 0 70 44 2 0 0 0 0.04399 3 16315 16248;16283;16315 51.415 16.483 1 230730 10293 2336 6358 6364 12811;12812;12813 12813 -0.015065290646703033 GIETIANEY 9 Unmodified _GIETIANEY_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000170606|P34932-2|HSPA4;ENSG00000164070|ENST00000296464|HSPA4L ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS UPN46_class_I_Rep_3 1 505.24493408203125 2 505.245472 1008.47639 0.23018 0.0001163 0.16298 8.2343E-05 0.39316 0.00019864 505.245528640382 57.714 0.39112 57.714 57.531 57.922 0 65 46 2 0 0 0 0.0053074 1 12643 12643 79.596 29.663 1 263720 10294 4480 6359 6365 12814 12814 -0.02750832927290503 GIFHSFLTAI 10 Unmodified _GIFHSFLTAI_ 0 0 0 REV__L1PA6_dup3602|chrX:63479531-63484467:+|1.1201663718762165|0.0605074139182198|4.21|151.0|219|2|anti-sense REV__L1PA6_dup3602|chrX:63479531-63484467:+|1.1201663718762165|0.0605074139182198|4.21|151.0|219|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.3065795898438 2 553.305667 1104.59678 0.16044 8.8772E-05 -0.38568 -0.0002134 -0.22524 -0.00012463 553.3054304752067 30.447 0.37086 30.447 30.246 30.617 0 49 27 2 0 0 0 0.56333 1 4995 4995 1.4819 0 1 77808 + 10295 29888 6360 6366 12815 12815 0.04866619856966281 GIGPLGPPGMP 11 Unmodified _GIGPLGPPGMP_ 0 0 0 REV__ENST00000483338.1_1_X:107826116-107869594:+|nuORF REV__ENST00000483338.1_1_X:107826116-107869594:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 496.26361083984375 2 496.76532 991.516088 0.12389 6.1544E-05 1.8499 0.00091894 1.9737 0.00098049 496.7649188783543 55.324 0.10197 58.802 58.743 58.845 3.4785 6 4 2 0 0 0 22.551 1 12556 12556 0.35063 0.35063 1 22540 + 10296 20956 6361 6367 12816 12816 0.01999015542446614 GIGWLKKC 8 Unmodified _GIGWLKKC_ 0 0 0 ENSG00000167654|ENST00000450849|ATCAY;nc|ENSG00000167654|Q86WG3-3|ATCAY ENSG00000167654|ENST00000450849|ATCAY ENSG00000167654|ENST00000450849|ATCAY MSMS UPN46_class_I_Rep_3 1 452.7569580078125 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 14.071 1 14.071 13.571 14.571 0 0 0 0 0.40738 1 544 544 0.79363 0 1 10297 4319 6362 6368 12817 12817 0.044433540962018014 GIILSVQAF 9 Unmodified _GIILSVQAF_ 0 0 0 REV__ENST00000433235.1_1_1:200623661-200623706:-|nuORF REV__ENST00000433235.1_1_1:200623661-200623706:-|nuORF MSMS UPN46_class_I_Rep_3 1 474.28204345703125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 36.749 1 36.749 36.249 37.249 0 0 0 0 0.38639 1 6845 6845 3.9444 1.3669 1 + 10298 22301 6363 6369 12818 12818 0.07335545936950894 GIISGGSSIPL 11 Unmodified _GIISGGSSIPL_ 0 0 0 L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|161|1|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|161|1|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|161|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.7885437011719 2 500.787307 999.560061 0.12474 6.2466E-05 0.43054 0.00021561 0.55527 0.00027807 500.7873960283251 53.926 1.1031 57.454 57.122 58.225 3.5278 120 58 3 0 0 0 0.65559 1 12339 12339 2.7352 0.23671 1 369020 10299 14469 6364 6370 12819 12819 0.06026323240439524 GIITITVFHL 10 Unmodified _GIITITVFHL_ 0 0 0 Tigger3b_dup2154|chr5:79660710-79661467:+|2.139454628137908|0.1392454422281508|3.94|151.0|60|3|anti-sense Tigger3b_dup2154|chr5:79660710-79661467:+|2.139454628137908|0.1392454422281508|3.94|151.0|60|3|anti-sense Tigger3b_dup2154|chr5:79660710-79661467:+|2.139454628137908|0.1392454422281508|3.94|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_3 7 557.814697265625 2 557.336967 1112.65938 NaN NaN NaN NaN NaN NaN NaN 90.515 1 94.362 93.862 94.862 3.847 0 0 0 0.53105 1 21480 21480 1.6526 0.45928 1 10300 33374 6365 6371 12820 12820 0.10755765925205196 GIIVENFSGL 10 Unmodified _GIIVENFSGL_ 0 0 0 L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|71|3|sense L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|71|3|sense L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|71|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.7871704101562 2 524.787307 1047.56006 0.081681 4.2865E-05 -0.048304 -2.535E-05 0.033377 1.7516E-05 524.7872050853895 74.014 0.90594 77.318 76.939 77.845 3.3048 265 92 4 0 0 0 0.29514 2 18223 18223;18330 34.402 2.2431 1 653320 10301 15228 6366 6372 12821;12822 12821 0.03818323240443533 GIKGTYHTV 9 Unmodified _GIKGTYHTV_ 0 0 0 REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|120|3|sense REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|120|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.2657775878906 2 488.266542 974.51853 -0.28071 -0.00013706 0.30327 0.00014807 0.02256 1.1015E-05 488.2665264016171 40.697 0.8442 43.934 43.406 44.25 3.2372 90 52 2 0 0 0 0.43153 1 8084 8084 6.2058 0.47393 1 132530 + 10302 29902 6367 6373 12823 12823 0.03025187271748564 GIKIKTTRY 9 Unmodified _GIKIKTTRY_ 0 0 0 L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|22|1|sense L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|22|1|sense L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 540.3335571289062 2 540.332216 1078.64988 0.4618 0.00024953 -0.060923 -3.2919E-05 0.40088 0.00021661 540.3321008680201 43.123 0.35725 46.764 46.588 46.945 3.6415 32 30 2 0 0 0 0.48846 1 8021 8021 1.8442 0.19162 1 56986 10303 9696 6368 6374 12824 12824 0.1136999763964468 GIKRVEGRSWY 11 Unmodified _GIKRVEGRSWY_ 0 0 0 ENSG00000103671|ENST00000261884|TRIP4;ENST00000560567.5_1_15:64710826-64716404:+|nuORF ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 MULTI-MSMS UPN48_class_I_Rep_1 5 450.9140930175781 3 450.914083 1349.72042 0.067097 3.0255E-05 -0.63717 -0.00028731 -0.57008 -0.00025706 450.91377318783486 32.745 0.77957 36.271 35.879 36.659 3.5266 148 86 2 0 0 0 0.56006 1 5070 5070 6.2344 0.36622 1 177430 10304 1669 6369 6375 12825 12825 0.05954670957316921 GILDVGCWKT 10 Unmodified _GILDVGCWKT_ 0 0 0 MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|113|1|anti-sense MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|113|1|anti-sense MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|113|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.2813110351562 2 546.281334 1090.54812 0.018769 1.0253E-05 -0.075184 -4.1072E-05 -0.056416 -3.0819E-05 546.2812317825402 35.966 1.4578 39.378 38.456 39.914 3.4114 127 100 2 0 0 0 0.56078 1 6520 6520 3.2813 0.28607 1 79351 10305 16222 6370 6376 12826 12826 0.00646383225603131 GILSGIDNKMF 11 Unmodified _GILSGIDNKMF_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|110|1|anti-sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|110|1|anti-sense MSMS UPN48_class_I_Rep_3 7 597.811279296875 2 597.812999 1193.61144 NaN NaN NaN NaN NaN NaN NaN 63.494 1 67.003 66.503 67.503 3.5091 0 0 0 0.38417 1 14200 14200 1.1933 0.59184 1 + 10306 29475 6371 6377 12827 12827 0.022383239428108936 GILSHINTV 9 Unmodified _GILSHINTV_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS UPN47_class_I_Rep_1 2 477.2740173339844 2 477.274367 952.53418 -0.060432 -2.8843E-05 -0.13159 -6.2806E-05 -0.19203 -9.1649E-05 477.27430812345443 48.864 0.68838 52.524 52.092 52.78 3.6592 76 45 2 0 0 0 0.10568 1 10549 10549 32.786 8.7651 1 119210 10307 971 6372 6378 12828 12828 0.05601473788806288 GILSHINTV 9 Unmodified _GILSHINTV_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS UPN47_class_I_Rep_2 3 477.2742614746094 2 477.274367 952.53418 0.095289 4.5479E-05 -0.22337 -0.00010661 -0.12808 -6.1129E-05 477.2741758888087 49.159 0.66709 52.505 52.189 52.856 3.3465 66 45 2 0 0 0 0.10568 1 10673 10673 32.786 8.7651 1 144860 10308 971 6372 6378 12829 12829 0.05601473788806288 GILSHINTV 9 Unmodified _GILSHINTV_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS UPN47_class_I_Rep_3 4 477.2744445800781 2 477.274367 952.53418 0.057551 2.7468E-05 -0.22909 -0.00010934 -0.17154 -8.1871E-05 477.27429647356064 49.302 0.71438 52.536 52.191 52.905 3.2345 72 42 2 0 0 0 0.015319 1 10798 10798 66.457 10.28 1 123700 10309 971 6372 6378 12830 12830 0.05601473788806288 GILVATSFWI 10 Unmodified _GILVATSFWI_ 0 0 0 REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF MSMS UPN47_class_I_Rep_3 4 553.8131713867188 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 41.579 1 44.816 44.316 45.316 3.2372 0 0 0 0.53105 1 8447 8447 3.5965 0.60125 1 + 10310 19476 6373 6379 12831 12831 0.06859790516796238 GILVELICCF 10 Unmodified _GILVELICCF_ 0 0 0 REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|336|3|anti-sense REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|336|3|anti-sense MSMS UPN47_class_I_Rep_2 3 555.2882690429688 2 555.290314 1108.56607 NaN NaN NaN NaN NaN NaN NaN 16.088 1 19.474 18.974 19.974 3.3864 0 0 0 0.53105 1 971 971 0.45834 0 1 + 10311 30377 6374 6380 12832 12832 0.016133821560742945 GILWRVLFF 9 Unmodified _GILWRVLFF_ 0 0 0 ENST00000527958.5_1_11:117039007-117039196:+|nuORF ENST00000527958.5_1_11:117039007-117039196:+|nuORF ENST00000527958.5_1_11:117039007-117039196:+|nuORF MSMS UPN47_class_I_Rep_1 2 575.843017578125 2 575.84222 1149.66989 NaN NaN NaN NaN NaN NaN NaN 83.308 1 86.847 86.347 87.347 3.5386 0 0 0 0.39326 1 20832 20832 2.3027 0 1 10312 7274 6375 6381 12833 12833 0.10103793370262792 GILWRVLFF 9 Unmodified _GILWRVLFF_ 0 0 0 ENST00000527958.5_1_11:117039007-117039196:+|nuORF ENST00000527958.5_1_11:117039007-117039196:+|nuORF ENST00000527958.5_1_11:117039007-117039196:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 575.8428955078125 2 575.84222 1149.66989 0.47664 0.00027447 0.97372 0.00056071 1.4504 0.00083518 575.8426476600869 82.805 0.35471 86.474 86.184 86.539 3.669 69 45 2 0 0 0 0.48414 1 19659 19659 2.3027 0 1 314450 10313 7274 6375 6381 12834 12834 0.10103793370262792 GINISGNFY 9 Unmodified _GINISGNFY_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ENST00000488946.1_1_19:49993436-49993604:+|nuORF;ENST00000479992.5_1_19:49990877-49993604:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MSMS UPN46_class_I_Rep_3 1 492.7427062988281 2 492.742899 983.471246 NaN NaN NaN NaN NaN NaN NaN 67.876 1 67.876 67.376 68.376 0 0 0 0 0.10315 1 15471 15471 24.021 5.8856 1 10314 3253 6376 6382 12835 12835 -0.02115091999235119 GINKKTALL 9 Unmodified _GINKKTALL_ 0 0 0 REV__ENSG00000117475|ENST00000367808|BLZF1 REV__ENSG00000117475|ENST00000367808|BLZF1 MULTI-MSMS UPN48_class_I_Rep_1 5 479.3085632324219 2 479.30821 956.601866 0.25575 0.00012259 -0.12897 -6.1818E-05 0.12678 6.0767E-05 479.308203696937 62.572 0.21303 66.035 65.98 66.193 3.4625 24 16 2 0 0 0 0.43982 1 14018 14018 5.7319 0.83484 1 69338 + 10315 18635 6377 6383 12836 12836 0.12182923719592509 GINKKTALL 9 Unmodified _GINKKTALL_ 0 0 0 REV__ENSG00000117475|ENST00000367808|BLZF1 REV__ENSG00000117475|ENST00000367808|BLZF1 MULTI-MSMS UPN48_class_I_Rep_1 5 479.3087463378906 2 479.30821 956.601866 0.25358 0.00012154 -0.16538 -7.9268E-05 0.0882 4.2275E-05 479.3081217675336 62.806 0.12201 66.268 66.193 66.315 3.4625 11 7 2 0 0 0 0.33908 1 14085 14085 11.495 3.8858 1 76547 + 10316 18635 6377 6383 12837 12837 0.12182923719592509 GIPIVSLVID 10 Unmodified _GIPIVSLVID_ 0 0 0 nc|ENSG00000215474|Q2VWA4-2|SKOR2;ENSG00000215474|ENST00000425639|SKOR2 nc|ENSG00000215474|Q2VWA4-2|SKOR2 nc|ENSG00000215474|Q2VWA4-2|SKOR2 MSMS UPN48_class_I_Rep_1 5 513.3160400390625 2 513.3157 1024.61685 NaN NaN NaN NaN NaN NaN NaN 107.75 1 111.38 110.88 111.88 3.6313 0 0 0 0.53105 1 25983 25983 10.074 1.3285 1 10317 5637 6378 6384 12838 12838 0.1055237079692688 GIPKPPSRN 9 Unmodified _GIPKPPSRN_ 0 0 0 HUERS-P3-int_dup651|chr20:47523927-47524231:-|1.2608226123660349|0.0262848701364851|5.58|151.0|10|3|sense HUERS-P3-int_dup651|chr20:47523927-47524231:-|1.2608226123660349|0.0262848701364851|5.58|151.0|10|3|sense HUERS-P3-int_dup651|chr20:47523927-47524231:-|1.2608226123660349|0.0262848701364851|5.58|151.0|10|3|sense MSMS UPN47_class_I_Rep_1 2 483.646484375 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 83.052 1 86.591 86.091 87.091 3.5386 0 0 0 0.39518 1 20762 20762 1.8442 1.1539 1 10318 8452 6379 6385 12839 12839 0.06172295882936396 GIQYRQFALVA 11 Unmodified _GIQYRQFALVA_ 0 0 0 REV__ENSG00000100321|ENST00000328933|SYNGR1 REV__ENSG00000100321|ENST00000328933|SYNGR1 MULTI-SECPEP UPN46_class_I_Rep_3 1 422.5926513671875 3 422.571545 1264.69281 0.036912 1.5598E-05 0.4193 0.00017718 0.45621 0.00019278 422.571730379715 52.724 0.37328 52.724 52.547 52.921 0 62 42 2 0 0 0 22.551 1 11281 11281 7.9454 0 1 195590 + 10319 18105 6380 6386 12840 12840 0.07104767697069292 GIRDQAGPAAF 11 Unmodified _GIRDQAGPAAF_ 0 0 0 ENST00000428945.1_1_1:15929692-15930004:-|nuORF ENST00000428945.1_1_1:15929692-15930004:-|nuORF ENST00000428945.1_1_1:15929692-15930004:-|nuORF MSMS UPN48_class_I_Rep_3 7 551.7888793945312 2 551.78563 1101.55671 NaN NaN NaN NaN NaN NaN NaN 35.877 1 39.544 39.044 40.044 3.6667 0 0 0 0.38417 1 5873 5873 2.9952 0.93549 1 10320 6715 6381 6387 12841 12841 0.009990731864036206 GIRKEPQREE 10 Unmodified _GIRKEPQREE_ 0 0 0 L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|28|2|sense L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|28|2|sense L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|28|2|sense MSMS UPN47_class_I_Rep_2 3 621.3365478515625 2 621.333476 1240.6524 NaN NaN NaN NaN NaN NaN NaN 33.608 1 37.048 36.548 37.548 3.4398 0 0 0 0.53105 1 5975 5975 1.1933 0.12188 1 10321 15358 6382 6388 12842 12842 0.04169801306647969 GIRKKAGH 8 Unmodified _GIRKKAGH_ 0 0 0 HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 433.7696228027344 2 433.769586 865.524619 0.14216 6.1665E-05 0.072276 3.1351E-05 0.21444 9.3017E-05 433.7693709963695 107.43 0.081589 111.11 111.03 111.12 3.6724 14 8 3 0 0 0 0.82752 1 26327 26327 5.7604 0 1 1462500 10322 8121 6383 6389 12843 12843 0.08647750293937406 GIRKKAGH 8 Unmodified _GIRKKAGH_ 0 0 0 HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 433.769586 865.524619 -0.19548 -8.4795E-05 0.71853 0.00031168 0.52305 0.00022688 433.7696484934988 107.45 0.097366 110.99 110.92 111.02 3.5345 -0.11561 0.00017181 NaN 5.7604 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3482000 10323 8121 6383 6389 0.08647750293937406 GIRKKAGH 8 Unmodified _GIRKKAGH_ 0 0 0 HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|57|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 433.769586 865.524619 0.097517 4.23E-05 1.2544 0.00054414 1.352 0.00058644 433.7695011636876 107.54 0.030998 111.22 111.19 111.23 3.6783 0.11348 0.00063674 NaN 5.7604 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1974700 10324 8121 6383 6389 0.08647750293937406 GIRRRWSWV 9 Unmodified _GIRRRWSWV_ 0 0 0 L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|25|3|sense L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|25|3|sense L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|25|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.1825256347656 3 405.900108 1214.67849 -0.40472 -0.00016428 -2.21 -0.00089705 -2.6147 -0.0010613 405.89901418678437 20.605 0.061583 20.605 20.577 20.639 0 7 5 2 0 0 0 0.12509 1 2175 2175 1.1933 0.23107 1 35234 10325 10725 6384 6390 12844 12844 0.07974160059438873 GIRTYHFRSTL 11 Unmodified _GIRTYHFRSTL_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.913818359375 3 450.914083 1349.72042 -0.82372 -0.00037143 0.11981 5.4023E-05 -0.70391 -0.0003174 450.91411454934956 32.349 1.2499 35.635 35.271 36.521 3.2867 237 97 3 0 0 0 0.64031 1 5639 5639 4.1166 0 1 316690 10326 5431 6385 6391 12845 12845 0.05954670957316921 GISDADFVLY 10 Unmodified _GISDADFVLY_ 0 0 0 ENST00000482837.1_1_3:197707238-197707376:+|nuORF;nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN ENST00000482837.1_1_3:197707238-197707376:+|nuORF ENST00000482837.1_1_3:197707238-197707376:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 550.268798828125 2 550.268947 1098.52334 0.41204 0.00022673 0.15918 8.7594E-05 0.57122 0.00031433 550.268822463652 57.464 0.95653 60.901 60.556 61.512 3.437 255 75 4 0 0 0 0.46161 1 13359 13359 14.838 3.198 1 955260 10327 5111 6386 6392 12846 12846 -0.021979733761327225 GISDGTEYW 9 Unmodified _GISDGTEYW_ 0 0 0 ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ MSMS UPN47_class_I_Rep_3 4 513.8068237304688 2 514.221997 1026.42944 NaN NaN NaN NaN NaN NaN NaN 65.059 1 68.239 67.739 68.739 3.1795 0 0 0 0.39518 1 15600 15600 1.8442 0.19162 1 10328 1553 6387 6393 12847 12847 -0.08271692478433579 GITVCCYMV 9 Unmodified _GITVCCYMV_ 0 0 0 L1MEc_dup6743|chr6:15420417-15421306:-|2.441376870426287|0.0097589564917225|7.97|151.0|59|3|anti-sense L1MEc_dup6743|chr6:15420417-15421306:-|2.441376870426287|0.0097589564917225|7.97|151.0|59|3|anti-sense L1MEc_dup6743|chr6:15420417-15421306:-|2.441376870426287|0.0097589564917225|7.97|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_2 6 494.7199401855469 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 53.234 1 56.844 56.344 57.344 3.6098 0 0 0 0.39428 1 11137 11137 2.0598 1.2661 1 10329 13127 6388 6394 12848 12848 -0.07143368226650182 GIVVIWRRRG 10 Unmodified _GIVVIWRRRG_ 0 0 0 L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|112|1|anti-sense;L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|224|2|anti-sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|112|1|anti-sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_2 3 404.5886535644531 3 404.587641 1210.74109 NaN NaN NaN NaN NaN NaN NaN 36.229 1 39.64 39.14 40.14 3.4114 0 0 0 0.53105 1 6772 6772 2.086 1.1237 1 10330 13632 6389 6395 12849 12849 0.14415306127625627 GIWHLCCR 8 Unmodified _GIWHLCCR_ 0 0 0 REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|44|1|anti-sense REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|44|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.2344665527344 2 494.236207 986.457861 NaN NaN NaN NaN NaN NaN NaN 116.8 1 120.43 119.93 120.93 3.6312 0 0 0 0.40738 1 27797 27797 0.79363 0 1 + 10331 28147 6390 6396 12850 12850 -0.03590944583845612 GIWHLCCR 8 Unmodified _GIWHLCCR_ 0 0 0 REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|44|1|anti-sense REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|44|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.2325134277344 2 494.236207 986.457861 NaN NaN NaN NaN NaN NaN NaN 118.3 1 121.88 121.38 122.38 3.5847 0 0 0 0.40738 1 28132 28132 0.79363 0 1 + 10332 28147 6390 6396 12851 12851 -0.03590944583845612 GIWRRLLPAWS 11 Unmodified _GIWRRLLPAWS_ 0 0 0 REV__L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|4|1|sense REV__L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.2629089355469 3 452.262935 1353.76697 0.14224 6.4329E-05 -0.19593 -8.8611E-05 -0.053688 -2.4281E-05 452.2628087425035 58.948 1.3532 62.435 61.475 62.828 3.487 150 83 2 0 0 0 0.68024 2 12702 12702;12786 0.50596 0.046251 1 280000 + 10333 30680 6391 6397 12852;12853 12852 0.1042415557926688 GIYCLYVTP 9 Unmodified _GIYCLYVTP_ 0 0 0 REV__MER102a_dup111|chr1:167656475-167656736:+|1.1431215907150611|0.0120447711418334|6.57|150.0|17|3|anti-sense REV__MER102a_dup111|chr1:167656475-167656736:+|1.1431215907150611|0.0120447711418334|6.57|150.0|17|3|anti-sense MSMS UPN48_class_I_Rep_2 6 514.7610473632812 2 514.759704 1027.50485 NaN NaN NaN NaN NaN NaN NaN 33.317 1 36.978 36.478 37.478 3.6607 0 0 0 0.39518 1 5243 5243 1.8442 0 1 + 10334 31060 6392 6398 12854 12854 -0.007798065516908537 GIYGSTFFV 9 Unmodified _GIYGSTFFV_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MULTI-MSMS UPN47_class_I_Rep_1 2 496.2659606933594 2 495.750193 989.485833 0.18016 8.9317E-05 0.1661 8.2343E-05 0.34626 0.00017166 495.75022874135504 77.892 0.39798 81.321 81.066 81.464 3.4289 66 38 2 0 0 0 0.28552 3 19337 19332;19337;19372 14.838 4.0143 1 95990 10335 5490 6393 6399 12855;12856;12857 12856 -0.009330198510838272 GIYGSTFFV 9 Unmodified _GIYGSTFFV_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MSMS UPN47_class_I_Rep_3 4 495.74981689453125 2 495.750193 989.485833 NaN NaN NaN NaN NaN NaN NaN 78.018 1 81.3 80.8 81.8 3.2816 0 0 0 0.059724 1 19441 19441 34.102 10.954 1 10336 5490 6393 6399 12858 12858 -0.009330198510838272 GIYGSTFFV 9 Unmodified _GIYGSTFFV_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MSMS UPN47_class_I_Rep_3 4 495.7496337890625 2 495.750193 989.485833 NaN NaN NaN NaN NaN NaN NaN 78.145 1 81.426 80.926 81.926 3.2816 0 0 0 0.089203 1 19478 19478 26.884 6.43 1 10337 5490 6393 6399 12859 12859 -0.009330198510838272 GIYKIAWYL 9 Unmodified _GIYKIAWYL_ 0 0 0 MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|27|2|anti-sense MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|27|2|anti-sense MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_2 6 563.7939453125 2 563.81841 1125.62227 NaN NaN NaN NaN NaN NaN NaN 50.719 1 54.387 53.887 54.887 3.6679 0 0 0 0.38478 1 10382 10382 4.3292 1.0479 1 10338 15827 6394 6400 12860 12860 0.06448094379402391 GIYPFFSKFS 10 Unmodified _GIYPFFSKFS_ 0 0 0 L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|59|2|anti-sense L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|59|2|anti-sense L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 596.8042602539062 2 596.8055 1191.59645 NaN NaN NaN NaN NaN NaN NaN 45.232 1 48.869 48.369 49.369 3.6372 0 0 0 0.53105 1 8638 8638 1.4819 0.15237 1 10339 14960 6395 6401 12861 12861 0.008312001371450606 GIYPHKLVF 9 Unmodified _GIYPHKLVF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000454924.1_1_7:63601918-63601972:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 537.2689819335938 2 537.310752 1072.60695 0.35327 0.00018981 -0.4354 -0.00023394 -0.082128 -4.4128E-05 537.3103997968416 49.878 1.0496 53.402 52.902 53.951 3.5246 160 65 3 0 0 0 0.021913 1 10132 10132 64.236 32.119 1 578290 10340 1325 6396 6402 12862 12862 0.07355227582229418 GIYPHKLVF 9 Unmodified _GIYPHKLVF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000454924.1_1_7:63601918-63601972:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 537.2689208984375 2 537.310752 1072.60695 0.40878 0.00021964 -0.32837 -0.00017644 0.080412 4.3206E-05 537.3105074348538 49.69 0.95317 53.384 52.943 53.897 3.6946 175 62 4 0 0 0 0.021913 1 10064 10064 64.236 32.119 1 730750 10341 1325 6396 6402 12863 12863 0.07355227582229418 GIYPHKLVF 9 Unmodified _GIYPHKLVF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000454924.1_1_7:63601918-63601972:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 537.2689208984375 2 537.310752 1072.60695 0.46698 0.00025091 -0.39264 -0.00021097 0.074344 3.9946E-05 537.3104285655589 49.831 1.028 53.452 52.981 54.009 3.621 164 64 3 0 0 0 0.044596 1 10005 10005 46.021 21.347 1 703880 10342 1325 6396 6402 12864 12864 0.07355227582229418 GIYRKNCDY 9 Unmodified _GIYRKNCDY_ 0 0 0 L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|10|1|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|10|1|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 566.2640380859375 2 566.266216 1130.51788 NaN NaN NaN NaN NaN NaN NaN 66.252 1 69.739 69.239 70.239 3.4866 0 0 0 0.37891 1 15122 15122 5.7319 0.50118 1 10343 11919 6397 6403 12865 12865 -0.04215975439592512 GKAVLMVKM 9 Unmodified _GKAVLMVKM_ 0 0 0 REV__ENST00000412139.6_1_7:86792783-86792930:+|nuORF REV__ENST00000412139.6_1_7:86792783-86792930:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 488.29486083984375 2 488.787741 975.560929 -0.70213 -0.00034319 -0.58899 -0.00028789 -1.2911 -0.00063108 488.7872823165233 13.389 0.30038 16.762 16.658 16.959 3.3734 50 36 2 0 0 0 0.12462 1 317 317 1.8442 1.0506 1 32130 + 10344 21779 6398 6404 12866 12866 0.07217123084137711 GKDNDVSYY 9 Unmodified _GKDNDVSYY_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|85|3|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|85|3|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|85|3|sense MSMS UPN47_class_I_Rep_3 4 530.7352905273438 2 530.732729 1059.4509 NaN NaN NaN NaN NaN NaN NaN 25.661 1 29.009 28.509 29.509 3.3485 0 0 0 0.39428 1 3641 3641 2.0598 0 1 10345 9021 6399 6405 12867 12867 -0.07644307449709231 GKDPLKCIF 9 Unmodified _GKDPLKCIF_ 0 0 0 REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF MSMS UPN47_class_I_Rep_3 4 510.7812194824219 2 510.78097 1019.54739 NaN NaN NaN NaN NaN NaN NaN 54.862 1 58.047 57.547 58.547 3.1856 0 0 0 0.32573 1 12491 12491 9.3831 0 1 + 10346 21380 6400 6406 12868 12868 0.0383958857653397 GKDPLLKSY 9 Unmodified _GKDPLLKSY_ 0 0 0 REV__L1MC3_dup5108|chr6:147242845-147243988:-|1.197428402762228|0.3032668860554087|1.98|151.0|1|1|sense REV__L1MC3_dup5108|chr6:147242845-147243988:-|1.197428402762228|0.3032668860554087|1.98|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 510.7900695800781 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 36.208 1 39.463 38.963 39.963 3.2547 0 0 0 0.37476 1 6800 6800 6.7232 0 1 + 10347 26759 6401 6407 12869 12869 0.056146271030456774 GKDRLEFTFS 10 Unmodified _GKDRLEFTFS_ 0 0 0 REV__CON__Q2KIG3 REV__CON__Q2KIG3 MSMS UPN46_class_I_Rep_3 1 600.3045654296875 2 600.306395 1198.59824 NaN NaN NaN NaN NaN NaN NaN 67.71 1 67.71 67.21 68.21 0 0 0 0 0.53105 1 15423 15423 9.3831 1.2276 1 + + 10348 17490 6402 6408 12870 12870 0.006882091551005942 GKFIAFKAVC 10 Unmodified _GKFIAFKAVC_ 0 0 0 L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|82|2|sense L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|82|2|sense L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|82|2|sense MSMS UPN47_class_I_Rep_3 4 542.305908203125 2 542.304613 1082.59467 NaN NaN NaN NaN NaN NaN NaN 39.527 1 42.765 42.265 43.265 3.238 0 0 0 0.53105 1 7819 7819 1.4819 0.68827 1 10349 14528 6403 6409 12871 12871 0.05667867847546404 GKFLFVLARV 10 Unmodified _GKFLFVLARV_ 0 0 0 SUN1|p.N313Kfs*16|1|0.07|ENSG00000164828|chr7:852835-852836|-/A|frameshift_variant SUN1|p.N313Kfs*16|1|0.07|ENSG00000164828|chr7:852835-852836|-/A|frameshift_variant SUN1|p.N313Kfs*16|1|0.07|ENSG00000164828|chr7:852835-852836|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 575.3616943359375 2 575.360776 1148.707 0.51288 0.00029509 1.2897 0.00074205 1.8026 0.0010371 575.3613262948628 64.84 0.26962 68.32 68.195 68.465 3.4792 33 18 3 0 0 0 0.56333 1 14698 14698 1.4819 0.95714 1 233520 10350 32840 6404 6410 12872 12872 0.1385946491602681 GKFLFVLARV 10 Unmodified _GKFLFVLARV_ 0 0 0 SUN1|p.N313Kfs*16|1|0.07|ENSG00000164828|chr7:852835-852836|-/A|frameshift_variant SUN1|p.N313Kfs*16|1|0.07|ENSG00000164828|chr7:852835-852836|-/A|frameshift_variant SUN1|p.N313Kfs*16|1|0.07|ENSG00000164828|chr7:852835-852836|-/A|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_3 7 2 575.360776 1148.707 0.50481 0.00029045 1.2544 0.00072176 1.7593 0.0010122 575.3615147414828 64.691 0.28197 68.199 68.006 68.288 3.5083 -0.060198 -1.9121E-05 NaN 1.4819 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 98939 10351 32840 6404 6410 0.1385946491602681 GKGFFLKI 8 Unmodified _GKGFFLKI_ 0 0 0 L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|57|1|anti-sense L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|57|1|anti-sense L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_3 7 455.2817687988281 2 455.281463 908.548374 NaN NaN NaN NaN NaN NaN NaN 51.956 1 55.554 55.054 56.054 3.5979 0 0 0 0.40746 1 10692 10692 0.69038 0 1 10352 9997 6405 6411 12873 12873 0.09044171007747082 GKGKGILQYY 10 Unmodified _GKGKGILQYY_ 0 0 0 ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|12|1|sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|12|1|sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.8170776367188 2 563.816399 1125.61824 0.50285 0.00028351 0.33238 0.0001874 0.83523 0.00047092 563.8166696905457 55.797 1.3127 59.298 58.764 60.077 3.5014 284 95 4 0 0 0 0.46161 1 12120 12120 14.838 0.93222 1 3498700 10353 7731 6406 6412 12874 12874 0.060460048857066795 GKGKITPPA 9 Unmodified _GKGKITPPA_ 0 0 0 REV__ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|29|2|sense REV__ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|29|2|sense MSMS UPN48_class_I_Rep_3 7 434.7798156738281 2 434.766178 867.517802 NaN NaN NaN NaN NaN NaN NaN 40.404 1 44.055 43.555 44.555 3.6509 0 0 0 0.38639 1 7180 7180 3.9444 1.6417 1 + 10354 23266 6407 6413 12875 12875 0.07874392622704818 GKGKKPKK 8 Unmodified _GKGKKPKK_ 0 0 0 REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|1|1|sense REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.79742431640625 2 435.797812 869.581071 -0.46987 -0.00020477 -0.39586 -0.00017252 -0.86573 -0.00037729 435.7975382978143 16.021 0.62936 19.518 19.351 19.981 3.4968 132 76 3 0 0 0 0.82752 1 983 983 2.3027 1.5091 1 82674 + 10355 25930 6408 6414 12876 12876 0.14106378130611574 GKGLVKRL 8 Unmodified _GKGLVKRL_ 0 0 0 REV__ENSG00000162727|ENST00000366476|OR2M5 REV__ENSG00000162727|ENST00000366476|OR2M5 MULTI-MSMS UPN47_class_I_Rep_1 2 435.79742431640625 2 435.797812 869.581071 -0.46987 -0.00020477 -0.39586 -0.00017252 -0.86573 -0.00037729 435.7975382978143 16.021 0.62936 19.518 19.351 19.981 3.4968 132 76 3 0 0 0 0.82752 1 946 946 2.3027 0 1 82674 + 10356 19939 6409 6415 12877 12877 0.14106378130600206 GKGLVKRL 8 Unmodified _GKGLVKRL_ 0 0 0 REV__ENSG00000162727|ENST00000366476|OR2M5 REV__ENSG00000162727|ENST00000366476|OR2M5 MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.797812 869.581071 -0.75305 -0.00032818 -0.20222 -8.8128E-05 -0.95527 -0.00041631 435.7976265196718 16.269 0.91095 19.656 19.449 20.36 3.3864 0.06894 9.0235E-05 NaN 2.3027 134 109 2 NaN NaN NaN NaN 0 NaN NaN 0 50035 + 10357 19939 6409 6415 0.14106378130600206 GKGNKCCC 8 Unmodified _GKGNKCCC_ 0 0 0 REV__ENSG00000183775|ENST00000512467|KCTD16 REV__ENSG00000183775|ENST00000512467|KCTD16 MULTI-SECPEP UPN48_class_I_Rep_3 7 406.86602783203125 2 406.664226 811.313899 0.094549 3.845E-05 2.9355 0.0011937 3.03 0.0012322 406.66517277682175 60.884 0.045967 64.397 64.372 64.418 3.5129 6 4 2 0 0 0 0.72333 1 13415 13415 0.69038 0.088878 1 22634 + 10358 20799 6410 6416 12878 12878 -0.09930534406282732 GKGNKCCC 8 Unmodified _GKGNKCCC_ 0 0 0 REV__ENSG00000183775|ENST00000512467|KCTD16 REV__ENSG00000183775|ENST00000512467|KCTD16 MULTI-MATCH UPN48_class_I_Rep_2 6 2 406.664226 811.313899 0.14823 6.0278E-05 2.2615 0.00091966 2.4097 0.00097994 406.66469738156184 60.772 0.038551 64.25 64.231 64.27 3.4785 -0.07349 -0.00037333 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 26055 + 10359 20799 6410 6416 -0.09930534406282732 GKGNKMKI 8 Unmodified _GKGNKMKI_ 0 0 0 HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|228|2|anti-sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|228|2|anti-sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|228|2|anti-sense MSMS UPN48_class_I_Rep_1 5 438.2623596191406 2 438.260205 874.505857 NaN NaN NaN NaN NaN NaN NaN 42.638 1 46.146 45.646 46.646 3.5079 0 0 0 0.40625 1 7909 7909 2.3027 1.6124 1 10360 8379 6411 6417 12879 12879 0.06358452607867093 GKGRRKQA 8 Unmodified _GKGRRKQA_ 0 0 0 ENST00000564353.5_1_15:74890862-74890994:+|nuORF ENST00000564353.5_1_15:74890862-74890994:+|nuORF ENST00000564353.5_1_15:74890862-74890994:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 450.27496337890625 2 450.777942 899.541332 -0.018588 -8.379E-06 -2.9432 -0.0013267 -2.9617 -0.0013351 450.7764634098585 88.291 0.10596 91.738 91.671 91.777 3.4471 12 10 2 0 0 0 0.72333 1 21953 21953 2.3027 0.4585 1 52922 10361 7476 6412 6418 12880 12880 0.08754251179891526 GKGRRKQA 8 Unmodified _GKGRRKQA_ 0 0 0 ENST00000564353.5_1_15:74890862-74890994:+|nuORF ENST00000564353.5_1_15:74890862-74890994:+|nuORF ENST00000564353.5_1_15:74890862-74890994:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 450.777942 899.541332 0.18683 8.4218E-05 -3.8534 -0.001737 -3.6666 -0.0016528 450.7759538860065 91.967 0.04863 91.967 91.939 91.987 0 0.11415 -0.00065514 NaN 2.3027 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 28467 10362 7476 6412 6418 0.08754251179891526 GKGRRPSL 8 Unmodified _GKGRRPSL_ 0 0 0 REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|54|2|sense REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|54|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 435.76678466796875 2 435.767043 869.519533 0.17742 7.7312E-05 -0.16923 -7.3745E-05 0.0081853 3.5669E-06 435.7668701314135 78.749 1.0417 82.371 81.961 83.003 3.6216 255 125 3 0 0 0 0.82752 1 18612 18612 2.3027 0 1 439550 + 10363 23566 6413 6419 12881 12881 0.07955446431321889 GKGRVSKK 8 Unmodified _GKGRVSKK_ 0 0 0 REV__nc|ENSG00000112715|P15692-6|VEGFA REV__nc|ENSG00000112715|P15692-6|VEGFA MULTI-SECPEP UPN48_class_I_Rep_3 7 430.8982849121094 2 430.277244 858.539935 -0.01209 -5.2022E-06 0.30006 0.00012911 0.28797 0.00012391 430.27722788211116 53.031 0.34773 56.614 56.482 56.83 3.5836 31 21 2 0 0 0 0.72333 1 11016 11016 0.69038 0 1 132340 + 10364 18487 6414 6420 12882 12882 0.1050061709113379 GKGRVSKK 8 Unmodified _GKGRVSKK_ 0 0 0 REV__nc|ENSG00000112715|P15692-6|VEGFA REV__nc|ENSG00000112715|P15692-6|VEGFA MULTI-MATCH UPN46_class_I_Rep_3 1 2 430.277244 858.539935 0.044466 1.9133E-05 -0.56836 -0.00024455 -0.5239 -0.00022542 430.27685535303385 56.625 0.033039 56.625 56.606 56.639 0 -0.022332 -0.00068001 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 76257 + 10365 18487 6414 6420 0.1050061709113379 GKGRVSKK 8 Unmodified _GKGRVSKK_ 0 0 0 REV__nc|ENSG00000112715|P15692-6|VEGFA REV__nc|ENSG00000112715|P15692-6|VEGFA MULTI-MATCH UPN48_class_I_Rep_2 6 2 430.277244 858.539935 0.14577 6.2724E-05 0.046058 1.9818E-05 0.19183 8.2541E-05 430.2771313456811 53.092 0.23005 56.702 56.589 56.819 3.6098 0.055067 -0.00015127 NaN 0.69038 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 102120 + 10366 18487 6414 6420 0.1050061709113379 GKGTRARP 8 Unmodified _GKGTRARP_ 0 0 0 nc|ENSG00000160117|Q8NAG6-1|ANKLE1;ENSG00000160117|ENST00000404085|ANKLE1;ENST00000404085.5_1_19:17392508-17397358:+|nuORF nc|ENSG00000160117|Q8NAG6-1|ANKLE1 nc|ENSG00000160117|Q8NAG6-1|ANKLE1 MULTI-MSMS UPN46_class_I_Rep_3 1 421.7518005371094 2 421.751393 841.488233 0.097838 4.1263E-05 -0.049554 -2.0899E-05 0.048284 2.0364E-05 421.7512790703048 84.216 0.65636 84.216 83.897 84.553 0 149 65 4 0 0 0 0.82752 1 19972 19972 0.69038 0.69038 1 2429200 10367 3855 6415 6421 12883 12883 0.06114873397223164 GKGVWWAWPL 10 Unmodified _GKGVWWAWPL_ 0 0 0 REV__HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|129|2|anti-sense REV__HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|129|2|anti-sense MSMS UPN46_class_I_Rep_3 1 600.322998046875 2 600.321651 1198.62875 NaN NaN NaN NaN NaN NaN NaN 110.68 1 110.68 110.18 111.18 0 0 0 0 0.53105 1 27265 27265 1.6526 0 1 + 10368 23696 6416 6422 12884 12884 0.03738032330807073 GKHKIKLK 8 Unmodified _GKHKIKLK_ 0 0 0 REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|30|2|sense REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.3272705078125 2 476.326737 950.63892 0.32269 0.00015371 -0.13498 -6.4295E-05 0.18771 8.941E-05 476.32657850827337 108.31 1.0247 111.84 111.63 112.65 3.5333 174 111 2 0 0 0 0.82752 2 26451 26451;26487 2.5775 0 1 26077000 + 10369 27779 6417 6423 12885;12886 12885 0.16162640056018063 GKHKIKLK 8 Unmodified _GKHKIKLK_ 0 0 0 REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|30|2|sense REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|30|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.3267517089844 2 476.326737 950.63892 0.21453 0.00010219 -0.35017 -0.0001668 -0.13564 -6.4611E-05 476.3264640105163 108.55 0.33939 112.23 112.17 112.51 3.6751 61 39 2 0 0 0 0.82752 1 25737 25737 2.5775 0 1 28923000 + 10370 27779 6417 6423 12887 12887 0.16162640056018063 GKHKKRYYG 9 Unmodified _GKHKKRYYG_ 0 0 0 REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|4|1|sense REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 568.8186645507812 2 568.819807 1135.62506 NaN NaN NaN NaN NaN NaN NaN 16.441 1 19.802 19.302 20.302 3.3619 0 0 0 0.40038 1 1025 1025 0.6015 0 1 + 10371 25632 6418 6424 12888 12888 0.06267362556923217 GKHKTYQK 8 Unmodified _GKHKTYQK_ 0 0 0 ENSG00000156313|ENST00000645032|RPGR ENSG00000156313|ENST00000645032|RPGR ENSG00000156313|ENST00000645032|RPGR MSMS UPN48_class_I_Rep_3 7 495.2801513671875 2 495.279983 988.545414 NaN NaN NaN NaN NaN NaN NaN 67.207 1 70.714 70.214 71.214 3.5077 0 0 0 0.40746 1 15325 15325 0.69038 0 1 10372 3730 6419 6425 12889 12889 0.050682958829384006 GKILFRRY 8 Unmodified _GKILFRRY_ 0 0 0 L1M5_dup48165|chr17:29748765-29749163:+|3.34487854688326|0.0582954020548381|5.84|151.0|9|2|sense L1M5_dup48165|chr17:29748765-29749163:+|3.34487854688326|0.0582954020548381|5.84|151.0|9|2|sense L1M5_dup48165|chr17:29748765-29749163:+|3.34487854688326|0.0582954020548381|5.84|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 526.8217163085938 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 25.923 1 25.923 25.423 26.423 0 0 0 0 0.40604 1 3630 3630 2.5775 0 1 10373 9187 6420 6426 12890 12890 0.10533452050663072 GKILKCNIPE 10 Unmodified _GKILKCNIPE_ 0 0 0 ENST00000497071.1_1_22:37593712-37595416:-|nuORF ENST00000497071.1_1_22:37593712-37595416:-|nuORF ENST00000497071.1_1_22:37593712-37595416:-|nuORF MSMS UPN47_class_I_Rep_2 3 557.8159790039062 2 557.818084 1113.62162 NaN NaN NaN NaN NaN NaN NaN 41.108 1 44.474 43.974 44.974 3.3655 0 0 0 0.53105 1 8251 8251 1.3295 0.63916 1 10374 7106 6421 6427 12891 12891 0.06934931668047284 GKKEIIAARFI 11 Unmodified _GKKEIIAARFI_ 0 0 0 REV__ENST00000374530.7_2_9:112931637-112931742:+|nuORF REV__ENST00000374530.7_2_9:112931637-112931742:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 623.8901977539062 2 623.387522 1244.76049 0.51208 0.00031923 0.49894 0.00031103 1.011 0.00063026 623.3876893850237 108.68 0.46742 112.22 112.09 112.56 3.5382 136 52 3 0 0 0 0.62748 1 26597 26597 4.5289 1.5336 1 27713000 + 10375 21998 6422 6428 12892 12892 0.14790217627887614 GKKFFRIKMR 10 Unmodified _GKKFFRIKMR_ 0 0 0 REV__L1MC4a_dup7348|chr12:89679467-89681231:+|1.5616500151654864|0.0173389905571774|6.49|151.0|57|3|sense REV__L1MC4a_dup7348|chr12:89679467-89681231:+|1.5616500151654864|0.0173389905571774|6.49|151.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.9353942871094 3 437.600782 1309.78052 -0.045119 -1.9744E-05 0.9165 0.00040106 0.87138 0.00038132 437.93564481085616 97.728 0.39264 101.34 101.21 101.6 3.6088 72 48 2 0 0 0 0.56454 1 23576 23576 0.62683 0 1 96269 + 10376 27015 6423 6429 12893 12893 0.13801690086847884 GKKHLKGC 8 Unmodified _GKKHLKGC_ 0 0 0 REV__ENSG00000166801|ENST00000675163|FAM111A REV__ENSG00000166801|ENST00000675163|FAM111A MSMS UPN46_class_I_Rep_3 1 435.7669982910156 2 435.752547 869.490542 NaN NaN NaN NaN NaN NaN NaN 82.345 1 82.345 81.845 82.845 0 0 0 0 0.40604 1 19502 19502 2.5775 0 1 + 10377 20188 6424 6430 12894 12894 0.050575858106640226 GKKIERFGQ 9 Unmodified _GKKIERFGQ_ 0 0 0 REV__ENST00000455320.5_2_2:190446526-190446742:-|nuORF REV__ENST00000455320.5_2_2:190446526-190446742:-|nuORF MSMS UPN46_class_I_Rep_3 1 531.7988891601562 2 531.806365 1061.59818 NaN NaN NaN NaN NaN NaN NaN 99.257 1 99.257 98.757 99.757 0 0 0 0 0.39598 1 24177 24177 1.6526 0.85899 1 + 10378 22406 6425 6431 12895 12895 0.06984253945756791 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.85 1 30.616 30.116 31.116 3.7662 0 0 0 0.53105 1 3904 3904 0.13989 0 1 + 10379 26952 6426 6432 12896 12896 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.609 1 31.376 30.876 31.876 3.7662 0 0 0 0.53105 1 4133 4133 0.15932 0 1 + 10380 26952 6426 6432 12897 12897 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.256 1 33.014 32.514 33.514 3.7578 0 0 0 0.53105 1 4621 4621 0.13989 0 1 + 10381 26952 6426 6432 12898 12898 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.727 1 33.485 32.985 33.985 3.7578 0 0 0 0.53105 1 4763 4763 0.15932 0 1 + 10382 26952 6426 6432 12899 12899 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.827 1 23.224 22.724 23.724 3.3963 0 0 0 0.53105 1 1945 1945 0.15932 0 1 + 10383 26952 6426 6432 12900 12900 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.088 1 67.262 66.762 67.762 3.1741 0 0 0 0.53105 1 15303 15303 0.15932 0 1 + 10384 26952 6426 6432 12901 12901 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.38 1 114.9 114.4 115.4 3.5207 0 0 0 0.53105 1 27339 27339 0.13989 0 1 + 10385 26952 6426 6432 12902 12902 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.656 1 33.206 32.706 33.706 3.5499 0 0 0 0.53105 1 4154 4154 0.15932 0 1 + 10386 26952 6426 6432 12903 12903 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.016 1 33.558 33.058 34.058 3.542 0 0 0 0.53105 1 4253 4253 0.15932 0 1 + 10387 26952 6426 6432 12904 12904 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.11 1 33.745 33.245 34.245 3.6351 0 0 0 0.53105 1 4360 4360 0.15932 0 1 + 10388 26952 6426 6432 12905 12905 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.596 1 23.217 22.717 23.717 3.6215 0 0 0 0.53105 1 1510 1510 0.13989 0 1 + 10389 26952 6426 6432 12906 12906 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.88 1 24.547 24.047 25.047 3.6667 0 0 0 0.53105 1 1866 1866 0.15932 0 1 + 10390 26952 6426 6432 12907 12907 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.617 1 25.331 24.831 25.831 3.7144 0 0 0 0.53105 1 2064 2064 0.15932 0 1 + 10391 26952 6426 6432 12908 12908 0.2778736654954628 GKKKKKKKLK 10 Unmodified _GKKKKKKKLK_ 0 0 0 REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense REV__L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.57 1 117.23 116.73 117.73 3.6568 0 0 0 0.53105 1 27011 27011 0.15932 0 1 + 10392 26952 6426 6432 12909 12909 0.2778736654954628 GKKKKLANCL 10 Unmodified _GKKKKLANCL_ 0 0 0 REV__L1MC5_dup11190|chr13:21434739-21435252:-|3.221215763056221|0.0225819237845964|7.16|151.0|16|2|sense REV__L1MC5_dup11190|chr13:21434739-21435252:-|3.221215763056221|0.0225819237845964|7.16|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 551.8439331054688 2 551.841894 1101.66923 NaN NaN NaN NaN NaN NaN NaN 88.163 1 91.786 91.286 92.286 3.6229 0 0 0 0.53105 1 21145 21145 1.4819 0.15237 1 + 10393 27055 6427 6433 12910 12910 0.12246630658887625 GKKKKLFFD 9 Unmodified _GKKKKLFFD_ 0 0 0 REV__L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|101|2|sense REV__L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|101|2|sense MSMS UPN48_class_I_Rep_3 7 555.8392944335938 2 555.837134 1109.65972 NaN NaN NaN NaN NaN NaN NaN 26.562 1 30.328 29.828 30.828 3.7663 0 0 0 0.4007 1 3379 3379 0.52476 0.066424 1 + 10394 24767 6428 6434 12911 12911 0.10927185645027748 GKKKTAVSLF 10 Unmodified _GKKKTAVSLF_ 0 0 0 L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|59|3|anti-sense L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|59|3|anti-sense L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_2 6 539.8322143554688 2 539.834591 1077.65463 NaN NaN NaN NaN NaN NaN NaN 85.908 1 89.614 89.114 90.114 3.7058 0 0 0 0.53105 1 20449 20449 1.4819 0 1 10395 12105 6429 6435 12912 12912 0.11890881782414908 GKKMTVPV 8 Unmodified _GKKMTVPV_ 0 0 0 ENST00000543813.1_1_15:101717595-101728206:-|nuORF;ENSG00000131873|ENST00000254190|CHSY1 ENST00000543813.1_1_15:101717595-101728206:-|nuORF ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 430.256103515625 2 430.257131 858.499709 0.088318 3.8E-05 -1.0798 -0.00046459 -0.99147 -0.00042659 430.2560185603869 108.78 0.52814 112.45 112.29 112.82 3.6746 207 57 4 0 0 0 0.82752 1 25846 25846 2.5775 0 1 90111000 10396 2723 6430 6436 12913 12913 0.06479934376341134 GKKMTVPV 8 Unmodified _GKKMTVPV_ 0 0 0 ENST00000543813.1_1_15:101717595-101728206:-|nuORF;ENSG00000131873|ENST00000254190|CHSY1 ENST00000543813.1_1_15:101717595-101728206:-|nuORF ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 430.257131 858.499709 -0.24664 -0.00010612 -2.0184 -0.00086845 -2.2651 -0.00097457 430.2562023901862 108.82 0.58515 112.36 112.15 112.74 3.5333 -0.018238 -4.5131E-05 NaN 2.5775 126 67 2 NaN NaN NaN NaN 0 NaN NaN 0 104180000 10397 2723 6430 6436 0.06479934376341134 GKKMTVPV 8 Unmodified _GKKMTVPV_ 0 0 0 ENST00000543813.1_1_15:101717595-101728206:-|nuORF;ENSG00000131873|ENST00000254190|CHSY1 ENST00000543813.1_1_15:101717595-101728206:-|nuORF ENST00000543813.1_1_15:101717595-101728206:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 430.257131 858.499709 -0.41206 -0.00017729 -1.957 -0.00084203 -2.3691 -0.0010193 430.25623735789475 108.78 0.56133 112.32 112.16 112.72 3.5382 -0.056401 7.7E-06 NaN 2.5775 121 62 2 NaN NaN NaN NaN 0 NaN NaN 0 107940000 10398 2723 6430 6436 0.06479934376341134 GKKQEECFTRA 11 Unmodified _GKKQEECFTRA_ 0 0 0 REV__nc|ENSG00000167523|Q96N06|SPATA33 REV__nc|ENSG00000167523|Q96N06|SPATA33 MSMS UPN47_class_I_Rep_2 3 432.8851318359375 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 111.5 1 115.03 114.53 115.53 3.5226 0 0 0 0.38417 1 27140 27140 0.40827 0 1 + 10399 32047 6431 6437 12914 12914 -0.006769608023205365 GKKRAKTTA 9 Unmodified _GKKRAKTTA_ 0 0 0 REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.3368835449219 2 480.801083 959.587613 0.23504 0.00011301 -0.010263 -4.9343E-06 0.22477 0.00010807 480.80100822570733 86.866 0.089447 90.583 90.541 90.631 3.7171 17 12 2 0 0 0 0.12551 1 20663 20663 0 0 1 75341 + 10400 28140 6432 6438 12915 12915 0.10620271291304562 GKKRAKTTA 9 Unmodified _GKKRAKTTA_ 0 0 0 REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.801083 959.587613 0.30684 0.00014753 -0.39615 -0.00019047 -0.089308 -4.2939E-05 480.8006530430339 87.265 0.11308 90.706 90.627 90.74 3.4407 0.035286 -0.00041162 NaN 0 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 55660 + 10401 28140 6432 6438 0.10620271291304562 GKKRAKTTA 9 Unmodified _GKKRAKTTA_ 0 0 0 REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 480.801083 959.587613 0.13523 6.5019E-05 -0.2102 -0.00010106 -0.07497 -3.6046E-05 480.80096060605337 87.26 0.11787 90.64 90.611 90.729 3.3801 -0.030072 -0.00023282 NaN 0 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 95613 + 10402 28140 6432 6438 0.10620271291304562 GKKRAKTTA 9 Unmodified _GKKRAKTTA_ 0 0 0 REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense REV__L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|20|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 480.801083 959.587613 0.12918 6.2112E-05 0.23299 0.00011202 0.36217 0.00017413 480.80119066621376 87.134 0.084358 90.752 90.717 90.801 3.6187 0.082036 0.00019335 NaN 0 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 123430 + 10403 28140 6432 6438 0.10620271291304562 GKKRHPHRKNR 11 Unmodified _GKKRHPHRKNR_ 0 0 0 REV__L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|12|1|sense REV__L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.2861022949219 3 471.951865 1412.83377 0.20626 9.7346E-05 0.096616 4.5598E-05 0.30288 0.00014294 471.95181485346643 98.701 0.35421 102.59 102.54 102.9 3.8839 86 49 2 0 0 0 0.68081 2 23417 23417;23454 0.45452 0.45452 1 447950 + 10404 29278 6433 6439 12916;12917 12916 0.14386203913727513 GKKRLEELVIQ 11 Unmodified _GKKRLEELVIQ_ 0 0 0 REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF MSMS UPN48_class_I_Rep_1 5 438.2685241699219 3 438.269755 1311.78744 NaN NaN NaN NaN NaN NaN NaN 104.77 1 108.4 107.9 108.9 3.6247 0 0 0 0.38417 1 25244 25244 1.2148 0.20126 1 + 10405 18981 6434 6440 12918 12918 0.14401281448408554 GKKRLEELVIQ 11 Unmodified _GKKRLEELVIQ_ 0 0 0 REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF MSMS UPN48_class_I_Rep_1 5 438.26849365234375 3 438.269755 1311.78744 NaN NaN NaN NaN NaN NaN NaN 104.93 1 108.55 108.05 109.05 3.6247 0 0 0 0.38417 1 25284 25284 1.2148 0 1 + 10406 18981 6434 6440 12919 12919 0.14401281448408554 GKKRMAVDAAV 11 Unmodified _GKKRMAVDAAV_ 0 0 0 CON__Q0VCM5 CON__Q0VCM5 CON__Q0VCM5 MSMS UPN48_class_I_Rep_2 6 573.3253173828125 2 573.326608 1144.63866 NaN NaN NaN NaN NaN NaN NaN 41.243 1 44.994 44.494 45.494 3.7508 0 0 0 0.38417 1 7514 7514 2.4985 0.19575 1 + 10407 643 6435 6441 12920 12920 0.07212852273846693 GKLFNFFF 8 Unmodified _GKLFNFFF_ 0 0 0 REV__L1MC4_dup18479|chr13:40959944-40960621:-|1.3665705681228206|0.0510025886728486|4.74|151.0|21|3|sense REV__L1MC4_dup18479|chr13:40959944-40960621:-|1.3665705681228206|0.0510025886728486|4.74|151.0|21|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 510.79119873046875 2 510.271096 1018.52764 -0.62035 -0.00031655 1.1181 0.00057052 0.49773 0.00025398 510.2718752860415 13.058 0.16326 16.432 16.344 16.507 3.3734 29 18 2 0 0 0 0.72333 1 207 207 0.69038 0 1 34923 + 10408 26843 6436 6442 12921 12921 0.0191158062808654 GKLFPGKYS 9 Unmodified _GKLFPGKYS_ 0 0 0 REV__L1MA7_dup6914|chr13:109459044-109462489:-|2.9562791347242863|0.0339434797141451|6.44|143.0|215|2|anti-sense REV__L1MA7_dup6914|chr13:109459044-109462489:-|2.9562791347242863|0.0339434797141451|6.44|143.0|215|2|anti-sense MSMS UPN46_class_I_Rep_3 1 498.78131103515625 2 498.779285 995.544017 NaN NaN NaN NaN NaN NaN NaN 91.352 1 91.352 90.852 91.852 0 0 0 0 0.39598 1 22063 22063 1.6526 0.85899 1 + 10409 25522 6437 6443 12922 12922 0.046066617941846744 GKLHKLILK 9 Unmodified _GKLHKLILK_ 0 0 0 L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|52|2|sense L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|52|2|sense L1ME1_dup17036|chr9:123571987-123574520:-|1.897122244364522|0.0602110596280367|4.98|151.0|52|2|sense MSMS UPN48_class_I_Rep_2 6 525.3641357421875 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 65.76 1 69.247 68.747 69.747 3.4866 0 0 0 0.4007 1 14971 14971 0.52476 0 1 10410 12255 6438 6444 12923 12923 0.18967768778634309 GKLHSDVDR 9 Unmodified _GKLHSDVDR_ 0 0 0 nc|ENSG00000139880|Q86UP0|CDH24;ENSG00000139880|ENST00000487137|CDH24 nc|ENSG00000139880|Q86UP0|CDH24 nc|ENSG00000139880|Q86UP0|CDH24 MSMS UPN47_class_I_Rep_2 3 513.768798828125 2 513.76998 1025.52541 NaN NaN NaN NaN NaN NaN NaN 23.57 1 27.035 26.535 27.535 3.4655 0 0 0 0.3967 1 2984 2984 1.4819 0.68827 1 10411 3157 6439 6445 12924 12924 0.013665001523349929 GKLIMFVVSK 10 Unmodified _GKLIMFVVSK_ 0 0 0 REV__ENST00000445273.6_1_13:31711130-31711382:-|nuORF REV__ENST00000445273.6_1_13:31711130-31711382:-|nuORF MSMS UPN48_class_I_Rep_3 7 561.3394165039062 2 561.341195 1120.66784 NaN NaN NaN NaN NaN NaN NaN 76.334 1 79.917 79.417 80.417 3.5831 0 0 0 0.53105 1 17976 17976 1.4819 0.28856 1 + 10412 22353 6440 6446 12925 12925 0.11232996570151954 GKLRQKPWGWV 11 Unmodified _GKLRQKPWGWV_ 0 0 0 REV__MER51A_dup184|chr4:904804-905349:+|1.5447986943448466|0.1269126522120046|3.61|151.0|27|2|anti-sense REV__MER51A_dup184|chr4:904804-905349:+|1.5447986943448466|0.1269126522120046|3.61|151.0|27|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.2628173828125 3 452.262935 1353.76697 0.11362 5.1385E-05 -0.23053 -0.00010426 -0.11691 -5.2875E-05 452.26281114719467 58.176 1.2025 61.708 61.315 62.517 3.5317 128 79 2 0 0 0 0.68024 1 12500 12500 0.50596 0.17668 1 244020 + 10413 31391 6441 6447 12926 12926 0.10424155579244143 GKLVTPKQK 9 Unmodified _GKLVTPKQK_ 0 0 0 REV__L1ME2z_dup3642|chr9:131452756-131453362:-|2.561557544086578|0.0797372213191362|5.01|151.0|4|1|sense REV__L1ME2z_dup3642|chr9:131452756-131453362:-|2.561557544086578|0.0797372213191362|5.01|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 500.25933837890625 2 499.821484 997.628415 -0.20753 -0.00010373 0.69563 0.00034769 0.4881 0.00024396 499.821720963454 40.907 0.087223 44.145 44.094 44.182 3.2372 6 4 2 0 0 0 0.12462 1 8241 8241 1.8442 0 1 31953 + 10414 27923 6442 6448 12927 12927 0.1295061261095043 GKNKEKDR 8 Unmodified _GKNKEKDR_ 0 0 0 ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|6|intron;ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|2|intron;ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|7|intron;ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|3|intron;ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|4|intron;ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|1|intron;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12 ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|6|intron ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|6|intron MULTI-MSMS UPN46_class_I_Rep_3 1 487.77215576171875 2 487.772522 973.530492 -0.27809 -0.00013564 -0.090803 -4.4291E-05 -0.36889 -0.00017994 487.77246455873075 16.183 1.6642 16.183 15.587 17.251 0 384 197 3 0 0 0 0.82752 1 936 936 3.9444 0.3479 1 297570 10415 1586 6443 6449 12928 12928 0.04266804014935133 GKNKKPNTA 9 Unmodified _GKNKKPNTA_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.27716064453125 2 479.277441 956.540328 0.20623 9.8839E-05 -0.29731 -0.00014249 -0.091083 -4.3654E-05 479.2771512495236 87.921 0.61107 91.577 91.296 91.907 3.6563 175 67 3 0 0 0 0.48846 1 21958 21958 1.8442 0 1 281210 10416 14282 6444 6450 12929 12929 0.06031992020302823 GKNKKPNTA 9 Unmodified _GKNKKPNTA_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 479.277441 956.540328 0.26478 0.0001269 -0.043513 -2.0855E-05 0.22127 0.00010605 479.2772829336023 91.45 0.33905 91.45 91.402 91.741 0 -0.075128 0.00013802 NaN 1.8442 52 32 3 NaN NaN NaN NaN 0 NaN NaN 0 748520 10417 14282 6444 6450 0.06031992020302823 GKNKKPNTA 9 Unmodified _GKNKKPNTA_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 479.277441 956.540328 0.20623 9.8839E-05 -0.29731 -0.00014249 -0.091083 -4.3654E-05 479.2771512495236 87.921 0.61107 91.577 91.296 91.907 3.6563 0.051766 -0.00010526 NaN 1.8442 175 67 3 NaN NaN NaN NaN 0 NaN NaN 0 281210 10418 14282 6444 6450 0.06031992020302823 GKNKKPNTA 9 Unmodified _GKNKKPNTA_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 479.277441 956.540328 0.29787 0.00014276 -0.26739 -0.00012815 0.030487 1.4612E-05 479.27717144067697 87.997 0.73183 91.444 91.086 91.818 3.4471 -0.080927 -7.6577E-05 NaN 1.8442 193 88 3 NaN NaN NaN NaN 0 NaN NaN 0 328690 10419 14282 6444 6450 0.06031992020302823 GKNKKPNTA 9 Unmodified _GKNKKPNTA_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 479.277441 956.540328 0.12211 5.8524E-05 0.012289 5.8899E-06 0.1344 6.4414E-05 479.27731455172375 88.057 0.68721 91.444 91.083 91.77 3.3873 -0.081003 0.00019151 NaN 1.8442 171 75 3 NaN NaN NaN NaN 0 NaN NaN 0 335340 10420 14282 6444 6450 0.06031992020302823 GKNKKPNTA 9 Unmodified _GKNKKPNTA_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|69|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 479.277441 956.540328 0.23821 0.00011417 -0.14584 -6.9898E-05 0.09237 4.4271E-05 479.27729860139567 87.9 0.030312 91.71 91.697 91.727 3.8104 0.18529 3.9931E-05 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 55748 10421 14282 6444 6450 0.06031992020302823 GKNKRRTK 8 Unmodified _GKNKRRTK_ 0 0 0 ENSG00000137766|ENST00000260323|UNC13C;ENST00000561210.1_1_15:54556427-54709226:+|nuORF ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C MSMS UPN47_class_I_Rep_2 3 494.3114318847656 2 494.312149 986.609745 NaN NaN NaN NaN NaN NaN NaN 69.601 1 72.877 72.377 73.377 3.2761 0 0 0 0.40746 1 16912 16912 0.69038 0 1 10422 3036 6445 6451 12930 12930 0.11590495759742225 GKNKSTPSR 9 Unmodified _GKNKSTPSR_ 0 0 0 REV__L1P3_dup491|chr3:23416245-23418494:-|1.1271063041970524|0.0965420225691833|3.55|151.0|50|3|sense REV__L1P3_dup491|chr3:23416245-23418494:-|1.1271063041970524|0.0965420225691833|3.55|151.0|50|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7723388671875 2 487.772522 973.530492 -0.27809 -0.00013564 -0.090803 -4.4291E-05 -0.36889 -0.00017994 487.77246455873075 16.183 1.6642 16.183 15.587 17.251 0 384 197 3 0 0 0 0.1249 4 1055 962;1055;1117;1147 29.082 0 1 297570 + 10423 28898 6446 6452 12931;12932;12933;12934 12932 0.04266804014935133 GKPAFRFRK 9 Unmodified _GKPAFRFRK_ 0 0 0 L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|72|2|sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|72|2|sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|72|2|sense MSMS UPN46_class_I_Rep_3 1 553.8308715820312 2 553.832717 1105.65088 NaN NaN NaN NaN NaN NaN NaN 86.792 1 86.792 86.292 87.292 0 0 0 0 0.39518 1 20762 20762 1.8442 1.1539 1 10424 14223 6447 6453 12935 12935 0.10228256799223345 GKPALNRSA 9 Unmodified _GKPALNRSA_ 0 0 0 REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 457.2643127441406 2 457.264333 912.514114 -0.15104 -6.9064E-05 0.46525 0.00021274 0.31421 0.00014368 457.2644930406652 74.28 1.1927 77.516 77.164 78.356 3.2363 174 130 2 0 0 0 0.47197 1 18420 18420 3.5965 0 1 164670 + 10425 21383 6448 6454 12936 12936 0.05435722848858404 GKPALNRSA 9 Unmodified _GKPALNRSA_ 0 0 0 REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 457.264333 912.514114 0.22813 0.00010432 -0.049845 -2.2792E-05 0.17829 8.1524E-05 457.2642384665168 74.187 0.1342 77.737 77.709 77.843 3.5505 0.12782 -0.00037563 NaN 3.5965 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 131420 + 10426 21383 6448 6454 0.05435722848858404 GKPANRRGRRA 11 Unmodified _GKPANRRGRRA_ 0 0 0 ENSG00000167525.14,PROCA1,chr17,-,I1.1,28711300,28711569|25|6.18|1|intron ENSG00000167525.14,PROCA1,chr17,-,I1.1,28711300,28711569|25|6.18|1|intron ENSG00000167525.14,PROCA1,chr17,-,I1.1,28711300,28711569|25|6.18|1|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 619.8697509765625 2 619.868686 1237.72282 0.49176 0.00030482 0.90048 0.00055818 1.3922 0.000863 619.8691465144411 87.572 0.32455 91.3 91.211 91.536 3.7279 46 36 2 0 0 0 22.551 1 20886 20886 1.1933 0.66858 1 172490 10427 4307 6449 6455 12937 12937 0.1134656420565534 GKPFRWYK 8 Unmodified _GKPFRWYK_ 0 0 0 nc|ENSG00000131849|P52740-2|ZNF132;ENSG00000131849|ENST00000254166|ZNF132 nc|ENSG00000131849|P52740-2|ZNF132 nc|ENSG00000131849|P52740-2|ZNF132 MSMS UPN48_class_I_Rep_2 6 541.2877197265625 2 541.300719 1080.58688 NaN NaN NaN NaN NaN NaN NaN 47.097 1 50.846 50.346 51.346 3.7494 0 0 0 0.39819 1 9276 9276 8.5933 1.304 1 10428 2722 6450 6456 12938 12938 0.04981476642274174 GKPHGRGV 8 Unmodified _GKPHGRGV_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS UPN46_class_I_Rep_3 1 404.23297119140625 2 404.232836 806.45112 0.036034 1.4566E-05 0.1801 7.2801E-05 0.21613 8.7367E-05 404.23278676260855 76.356 0.5022 76.356 76.118 76.62 0 67 45 2 0 0 0 0.82752 1 17826 17826 2.3027 2.3027 1 93114 10429 678 6451 6457 12939 12939 0.040152018514731935 GKPIRNNV 8 Unmodified _GKPIRNNV_ 0 0 0 nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 nc|ENSG00000163110|Q96HC4-7|PDLIM5 nc|ENSG00000163110|Q96HC4-7|PDLIM5 MSMS UPN46_class_I_Rep_3 1 449.2666931152344 2 449.266876 896.519199 NaN NaN NaN NaN NaN NaN NaN 85.257 1 85.257 84.757 85.757 0 0 0 0 0.4044 1 20330 20330 4.756 0.42677 1 10430 3983 6452 6458 12940 12940 0.06680026711467235 GKPLFGILWF 10 Unmodified _GKPLFGILWF_ 0 0 0 REV__L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|134|1|anti-sense REV__L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|134|1|anti-sense MSMS UPN48_class_I_Rep_3 7 589.34326171875 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 82.599 1 86.306 85.806 86.806 3.7066 0 0 0 0.53105 1 19580 19580 0.40072 0 1 + 10431 29258 6453 6459 12941 12941 0.08828373650408139 GKPLRIVTCRP 11 Unmodified _GKPLRIVTCRP_ 0 0 0 REV__L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|122|3|sense REV__L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|122|3|sense MSMS UPN48_class_I_Rep_1 5 620.3705444335938 2 620.371349 1238.72815 NaN NaN NaN NaN NaN NaN NaN 86.469 1 90.082 89.582 90.582 3.613 0 0 0 0.38417 1 20717 20717 1.0715 0 1 + 10432 30300 6454 6460 12942 12942 0.11833106953235983 GKPPRHLER 9 Unmodified _GKPPRHLER_ 0 0 0 REV__HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|84|3|sense REV__HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|84|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 545.3174438476562 2 545.317432 1088.62031 0.50273 0.00027415 -0.88815 -0.00048432 -0.38542 -0.00021018 545.3168456454797 83.33 0.14393 86.741 86.692 86.835 3.4116 28 17 2 0 0 0 0.48846 1 20794 20794 1.8442 1.8442 1 100670 + 10433 23981 6455 6461 12943 12943 0.07954478414171717 GKPPRHLER 9 Unmodified _GKPPRHLER_ 0 0 0 REV__HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|84|3|sense REV__HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|84|3|sense MSMS UPN47_class_I_Rep_3 4 545.3167114257812 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 80.064 1 83.373 82.873 83.873 3.309 0 0 0 0.38639 1 20038 20038 3.9444 0.94915 1 + 10434 23981 6455 6461 12944 12944 0.07954478414171717 GKPQPLAAIAP 11 Unmodified _GKPQPLAAIAP_ 0 0 0 ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1 ENST00000382162.7_1_22:32002284-32014401:+|nuORF ENST00000382162.7_1_22:32002284-32014401:+|nuORF MSMS UPN46_class_I_Rep_3 1 531.8168334960938 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 84.282 1 84.282 83.782 84.782 0 0 0 0 0.38417 1 20045 20045 2.9952 0.69251 1 10435 5410 6456 6462 12945 12945 0.09498308748334239 GKPQPLAAIAP 11 Unmodified _GKPQPLAAIAP_ 0 0 0 ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1 ENST00000382162.7_1_22:32002284-32014401:+|nuORF ENST00000382162.7_1_22:32002284-32014401:+|nuORF MSMS UPN48_class_I_Rep_3 7 531.8175048828125 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 79.674 1 83.316 82.816 83.816 3.6423 0 0 0 0.38417 1 18895 18895 1.3295 0.63916 1 10436 5410 6456 6462 12946 12946 0.09498308748334239 GKPRFHRPI 9 Unmodified _GKPRFHRPI_ 0 0 0 REV__ENSG00000054938|ENST00000376332|CHRDL2 REV__ENSG00000054938|ENST00000376332|CHRDL2 MSMS UPN47_class_I_Rep_1 2 554.3328857421875 2 554.330342 1106.64613 NaN NaN NaN NaN NaN NaN NaN 82.326 1 85.838 85.338 86.338 3.5122 0 0 0 0.39518 1 20563 20563 1.8442 0.36234 1 + 10437 17694 6457 6463 12947 12947 0.09707372656453117 GKPRFHRPI 9 Unmodified _GKPRFHRPI_ 0 0 0 REV__ENSG00000054938|ENST00000376332|CHRDL2 REV__ENSG00000054938|ENST00000376332|CHRDL2 MSMS UPN48_class_I_Rep_3 7 554.3323364257812 2 554.330342 1106.64613 NaN NaN NaN NaN NaN NaN NaN 79.322 1 82.964 82.464 83.464 3.6423 0 0 0 0.39518 1 18805 18805 1.8442 0.51471 1 + 10438 17694 6457 6463 12948 12948 0.09707372656453117 GKPRPPGV 8 Unmodified _GKPRPPGV_ 0 0 0 MLT1G_dup1248|chr7:92820985-92821484:+|1.048068550495648|0.0075381381254684|7.12|151.0|12|2|sense MLT1G_dup1248|chr7:92820985-92821484:+|1.048068550495648|0.0075381381254684|7.12|151.0|12|2|sense MLT1G_dup1248|chr7:92820985-92821484:+|1.048068550495648|0.0075381381254684|7.12|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 404.24615478515625 2 404.245412 806.476272 NaN NaN NaN NaN NaN NaN NaN 82.543 1 86.118 85.618 86.618 3.5753 0 0 0 0.40604 1 19715 19715 2.5775 0.27475 1 10439 16402 6458 6464 12949 12949 0.06529256654039273 GKPTGLTQR 9 Unmodified _GKPTGLTQR_ 0 0 0 REV__L1PA17_dup1810|chr6:110801835-110802707:+|1.1597622796596638|0.0054647378269872|7.73|150.0|8|1|sense REV__L1PA17_dup1810|chr6:110801835-110802707:+|1.1597622796596638|0.0054647378269872|7.73|150.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2771911621094 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.47493 1 18754 18754 3.2813 3.2813 1 595600 + 10440 29454 6459 6465 12950 12950 0.060319920203255606 GKPTGLTQR 9 Unmodified _GKPTGLTQR_ 0 0 0 REV__L1PA17_dup1810|chr6:110801835-110802707:+|1.1597622796596638|0.0054647378269872|7.73|150.0|8|1|sense REV__L1PA17_dup1810|chr6:110801835-110802707:+|1.1597622796596638|0.0054647378269872|7.73|150.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.2781066894531 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.47493 1 18411 18411 3.2813 3.2813 1 542900 + 10441 29454 6459 6465 12951 12951 0.060319920203255606 GKPTGLTQR 9 Unmodified _GKPTGLTQR_ 0 0 0 REV__L1PA17_dup1810|chr6:110801835-110802707:+|1.1597622796596638|0.0054647378269872|7.73|150.0|8|1|sense REV__L1PA17_dup1810|chr6:110801835-110802707:+|1.1597622796596638|0.0054647378269872|7.73|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.2770690917969 2 479.277441 956.540328 0.26784 0.00012837 1.3621 0.00065283 1.63 0.0007812 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.47493 1 17731 17731 3.2813 0.70383 1 496720 + 10442 29454 6459 6465 12952 12952 0.060319920203255606 GKPVPCKR 8 Unmodified _GKPVPCKR_ 0 0 0 REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF MSMS UPN47_class_I_Rep_2 3 442.7588195800781 2 442.760372 883.506192 NaN NaN NaN NaN NaN NaN NaN 82.085 1 85.483 84.983 85.983 3.3984 0 0 0 0.4044 1 20460 20460 4.756 2.4533 1 + 10443 23021 6460 6466 12953 12953 0.05977872327719069 GKPVPCKR 8 Unmodified _GKPVPCKR_ 0 0 0 REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 442.7595520019531 2 442.760372 883.506192 0.18214 8.0642E-05 -2.2918 -0.0010147 -2.1096 -0.00093406 442.759200877809 82.427 0.075706 86.134 86.101 86.176 3.7066 10 9 2 0 0 0 0.82752 1 19538 19538 2.3027 1.5091 1 116370 + 10444 23021 6460 6466 12954 12954 0.05977872327719069 GKPVPCKR 8 Unmodified _GKPVPCKR_ 0 0 0 REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 442.760372 883.506192 -0.2893 -0.00012809 -1.7404 -0.00077057 -2.0297 -0.00089866 442.75958904055875 82.698 0.054245 86.035 86.003 86.057 3.337 -0.085073 8.9482E-05 NaN 2.3027 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 39002 + 10445 23021 6460 6466 0.05977872327719069 GKPVPCKR 8 Unmodified _GKPVPCKR_ 0 0 0 REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 442.760372 883.506192 0.12659 5.6051E-05 -2.0151 -0.00089221 -1.8885 -0.00083616 442.7593628050521 82.523 0.13196 86.192 86.12 86.252 3.669 0.071746 -0.00015381 NaN 2.3027 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 97338 + 10446 23021 6460 6466 0.05977872327719069 GKPVPCKR 8 Unmodified _GKPVPCKR_ 0 0 0 REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF REV__ENST00000560630.2_1_15:49470652-49470838:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 442.760372 883.506192 0.18214 8.0642E-05 -2.2918 -0.0010147 -2.1096 -0.00093406 442.759200877809 82.427 0.075706 86.134 86.101 86.176 3.7066 0.013327 -0.0003988 NaN 2.3027 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 116370 + 10447 23021 6460 6466 0.05977872327719069 GKQLILYN 8 Unmodified _GKQLILYN_ 0 0 0 MER47B_dup456|chr11:43453739-43454059:-|1.2134082084439564|0.0196538619681209|5.95|150.0|12|3|sense MER47B_dup456|chr11:43453739-43454059:-|1.2134082084439564|0.0196538619681209|5.95|150.0|12|3|sense MER47B_dup456|chr11:43453739-43454059:-|1.2134082084439564|0.0196538619681209|5.95|150.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 474.779296875 2 474.779285 947.544017 NaN NaN NaN NaN NaN NaN NaN 57.718 1 61.009 60.509 61.509 3.2912 0 0 0 0.40625 1 13310 13310 0.69038 0 1 10448 16008 6461 6467 12955 12955 0.06814661794169297 GKRFRLAL 8 Unmodified _GKRFRLAL_ 0 0 0 ENST00000544807.6_1_14:88450759-88450870:-|nuORF ENST00000544807.6_1_14:88450759-88450870:-|nuORF ENST00000544807.6_1_14:88450759-88450870:-|nuORF MSMS UPN47_class_I_Rep_1 2 480.80718994140625 2 480.808711 959.602869 NaN NaN NaN NaN NaN NaN NaN 33.979 1 37.677 37.177 38.177 3.6983 0 0 0 0.40746 1 6054 6054 0.69038 0 1 10449 7369 6462 6468 12956 12956 0.12145182879157801 GKRKPFFF 8 Unmodified _GKRKPFFF_ 0 0 0 MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|87|3|anti-sense MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|87|3|anti-sense MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|87|3|anti-sense MSMS UPN47_class_I_Rep_1 2 513.797119140625 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 97.938 1 101.72 101.22 102.22 3.7861 0 0 0 0.40738 1 24254 24254 0.79363 0 1 10450 16165 6463 6469 12957 12957 0.06930378130596182 GKRLVHCNY 9 Unmodified _GKRLVHCNY_ 0 0 0 L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|109|2|sense L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|109|2|sense L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|109|2|sense MSMS UPN47_class_I_Rep_1 2 545.2837524414062 2 545.284743 1088.55493 NaN NaN NaN NaN NaN NaN NaN 49.597 1 53.256 52.756 53.756 3.6592 0 0 0 0.39518 1 10802 10802 1.8442 0 1 10451 10069 6464 6470 12958 12958 0.014197408968129821 GKRPAAAAA 9 Unmodified _GKRPAAAAA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;ENSG00000124535.16,WRNIP1,chr6,+,I1.1,2766445,2768690|45|17.61|1|intron;ENSG00000124535.16,WRNIP1,chr6,+,I2.1,2768883,2770119|44|21.86|1|intron nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MSMS UPN47_class_I_Rep_1 2 406.7486572265625 2 406.740494 811.466435 NaN NaN NaN NaN NaN NaN NaN 72.337 1 75.717 75.217 76.217 3.3799 0 0 0 0.4029 1 17694 17694 0 0 1 10452 2470 6465 6471 12959 12959 0.053160686486307895 GKRVLIFIILF 11 Unmodified _GKRVLIFIILF_ 0 0 0 REV__Charlie10_dup789|chr11:73051928-73052844:+|2.595540844606835|0.0131432563455768|7.63|151.0|28|2|sense REV__Charlie10_dup789|chr11:73051928-73052844:+|2.595540844606835|0.0131432563455768|7.63|151.0|28|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 440.79931640625 3 440.291831 1317.85366 0.050584 2.2272E-05 0.90416 0.00039809 0.95474 0.00042037 440.2921151390198 56.52 0.15256 60.063 59.929 60.082 3.5427 19 11 2 0 0 0 22.551 1 12039 12039 0.50596 0.41111 1 110190 + 10453 17280 6466 6472 12960 12960 0.20745142081113954 GKRVRWLFR 9 Unmodified _GKRVRWLFR_ 0 0 0 REV__ENST00000480340.1_1_1:153902104-153902251:-|nuORF REV__ENST00000480340.1_1_1:153902104-153902251:-|nuORF MSMS UPN48_class_I_Rep_1 5 406.91839599609375 3 406.58412 1216.73053 NaN NaN NaN NaN NaN NaN NaN 104.53 1 108.15 107.65 108.65 3.6247 0 0 0 0.39887 1 25182 25182 0.96228 0.0979 1 + 10454 22560 6467 6473 12961 12961 0.13083323473188102 GKSHRKKA 8 Unmodified _GKSHRKKA_ 0 0 0 REV__L1MA4_dup1563|chr3:36979518-36980265:-|1.7103594332925238|0.1706643381619818|3.33|151.0|9|2|sense REV__L1MA4_dup1563|chr3:36979518-36980265:-|1.7103594332925238|0.1706643381619818|3.33|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 456.251708984375 2 456.280318 910.546083 NaN NaN NaN NaN NaN NaN NaN 52.192 1 52.192 51.692 52.692 0 0 0 0 0.4044 1 11145 11145 4.756 2.1785 1 + 10455 25136 6468 6474 12962 12962 0.08723135322645703 GKSHRRKRTRS 11 Unmodified _GKSHRRKRTRS_ 0 0 0 ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1 ENSG00000013441|ENST00000321356|CLK1 ENSG00000013441|ENST00000321356|CLK1 MSMS UPN47_class_I_Rep_3 4 456.8018798828125 3 456.939625 1367.79705 NaN NaN NaN NaN NaN NaN NaN 42.981 1 46.22 45.72 46.72 3.2394 0 0 0 0.38417 1 8874 8874 0.32927 0.16995 1 10456 788 6469 6475 12963 12963 0.12785907297165977 GKSKIKMF 8 Unmodified _GKSKIKMF_ 0 0 0 REV__ENST00000496424.2_1_10:78317055-78317133:+|nuORF REV__ENST00000496424.2_1_10:78317055-78317133:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 469.7786560058594 2 469.778231 937.541908 0.22965 0.00010788 0.68372 0.0003212 0.91337 0.00042908 469.7784623874216 83.849 0.51655 87.577 87.322 87.839 3.7281 97 61 2 0 0 0 0.82752 2 19887 19887;19922 2.5775 2.5775 1 163730 + 10457 22661 6470 6476 12964;12965 12964 0.07063909784722 GKSSLQLPRPR 11 Unmodified _GKSSLQLPRPR_ 0 0 0 nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6 nc|ENSG00000063015|Q53EL9-2|SEZ6 nc|ENSG00000063015|Q53EL9-2|SEZ6 MULTI-MSMS UPN47_class_I_Rep_3 4 619.8690185546875 2 619.870028 1237.7255 0.49008 0.00030378 -0.78143 -0.00048438 -0.29135 -0.0001806 619.8698973472317 85.583 0.032761 88.954 88.931 88.964 3.3716 5 3 2 0 0 0 0.67519 1 21442 21442 0.96228 0.36078 1 84431 10458 979 6471 6477 12966 12966 0.11614974819894996 GKTKYKYHS 9 Unmodified _GKTKYKYHS_ 0 0 0 REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|19|2|sense REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|19|2|sense MSMS UPN47_class_I_Rep_1 2 556.2881469726562 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 102.57 1 106.36 105.86 106.86 3.7888 0 0 0 0.39518 1 25243 25243 1.8442 0 1 + 10459 29415 6472 6478 12967 12967 0.031325477088330445 GKTKYKYHS 9 Unmodified _GKTKYKYHS_ 0 0 0 REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|19|2|sense REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|19|2|sense MSMS UPN47_class_I_Rep_1 2 556.2970581054688 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 102.75 1 106.53 106.03 107.03 3.7788 0 0 0 0.39518 1 25282 25282 1.8442 0 1 + 10460 29415 6472 6478 12968 12968 0.031325477088330445 GKTKYKYHS 9 Unmodified _GKTKYKYHS_ 0 0 0 REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|19|2|sense REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|19|2|sense MSMS UPN47_class_I_Rep_2 3 556.287353515625 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 102.69 1 106.21 105.71 106.71 3.5231 0 0 0 0.38478 1 24991 24991 4.3292 0 1 + 10461 29415 6472 6478 12969 12969 0.031325477088330445 GKTLFAPLT 9 Unmodified _GKTLFAPLT_ 0 0 0 REV__MLT1I_dup10273|chr20:3989575-3989960:+|3.2201437572258778|0.0659389145227295|5.61|151.0|29|3|anti-sense REV__MLT1I_dup10273|chr20:3989575-3989960:+|3.2201437572258778|0.0659389145227295|5.61|151.0|29|3|anti-sense MSMS UPN47_class_I_Rep_1 2 474.2822265625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.85 1 113.45 112.95 113.95 3.6046 0 0 0 0.38784 1 27102 27102 3.5965 1.2938 1 + 10462 31766 6473 6479 12970 12970 0.07335545936939525 GKTPSIGRVI 10 Unmodified _GKTPSIGRVI_ 0 0 0 REV__nc|ENSG00000175920|Q18PE1-2|DOK7 REV__nc|ENSG00000175920|Q18PE1-2|DOK7 MSMS UPN48_class_I_Rep_3 7 514.3167724609375 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 61.685 1 65.196 64.696 65.696 3.5104 0 0 0 0.53105 1 13652 13652 2.9952 0.69251 1 + 10463 20571 6474 6480 12971 12971 0.10633424605566688 GKVFSHRAL 9 Unmodified _GKVFSHRAL_ 0 0 0 ENSG00000119574|ENST00000594051|ZBTB45 ENSG00000119574|ENST00000594051|ZBTB45 ENSG00000119574|ENST00000594051|ZBTB45 MSMS UPN47_class_I_Rep_3 4 507.7941589355469 2 507.795801 1013.57705 NaN NaN NaN NaN NaN NaN NaN 61.97 1 65.136 64.636 65.636 3.1667 0 0 0 0.38478 1 14658 14658 4.3292 0 1 10464 2284 6475 6481 12972 12972 0.07080288636893783 GKVFSLWAL 9 Unmodified _GKVFSLWAL_ 0 0 0 nc|ENSG00000123870|P52743|ZNF137P nc|ENSG00000123870|P52743|ZNF137P nc|ENSG00000123870|P52743|ZNF137P MSMS UPN48_class_I_Rep_3 7 510.7985534667969 2 510.797478 1019.5804 NaN NaN NaN NaN NaN NaN NaN 63.26 1 66.769 66.269 67.269 3.5091 0 0 0 0.39428 1 14128 14128 2.0598 0 1 10465 16676 6476 6482 12973 12973 0.07139538690887548 GKVFWRKA 8 Unmodified _GKVFWRKA_ 0 0 0 ENST00000524026.1_1_8:10692103-10697380:-|nuORF ENST00000524026.1_1_8:10692103-10697380:-|nuORF ENST00000524026.1_1_8:10692103-10697380:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2957763671875 2 496.295436 990.57632 0.23194 0.00011511 0.80209 0.00039807 1.034 0.00051319 496.2958028685893 38.406 0.10276 38.406 38.379 38.482 0 12 8 3 0 0 0 0.82752 1 7312 7312 2.3027 0.24298 1 920780 10466 7247 6477 6483 12974 12974 0.0806549398784 GKVFWRKA 8 Unmodified _GKVFWRKA_ 0 0 0 ENST00000524026.1_1_8:10692103-10697380:-|nuORF ENST00000524026.1_1_8:10692103-10697380:-|nuORF ENST00000524026.1_1_8:10692103-10697380:-|nuORF MSMS UPN46_class_I_Rep_3 1 496.2957458496094 2 496.295436 990.57632 NaN NaN NaN NaN NaN NaN NaN 38.58 1 38.58 38.08 39.08 0 0 0 0 0.40625 1 7355 7355 2.3027 0.24298 1 10467 7247 6477 6483 12975 12975 0.0806549398784 GKVGPIHRRT 10 Unmodified _GKVGPIHRRT_ 0 0 0 L1M4b_dup4168|chr19:40027078-40028333:-|1.7033236792732356|0.3994504520784352|2.09|151.0|28|2|sense L1M4b_dup4168|chr19:40027078-40028333:-|1.7033236792732356|0.3994504520784352|2.09|151.0|28|2|sense L1M4b_dup4168|chr19:40027078-40028333:-|1.7033236792732356|0.3994504520784352|2.09|151.0|28|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 560.3408813476562 2 560.838531 1119.66251 0.45937 0.00025764 1.635 0.00091699 2.0944 0.0011746 561.3395791628901 79.345 0.12936 82.987 82.902 83.032 3.6423 19 14 2 0 0 0 0.84575 1 18794 18794 0.26902 0 1 42350 10468 9025 6478 6484 12976 12976 0.10746453822548574 GKVHAKKL 8 Unmodified _GKVHAKKL_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_1 2 440.79962158203125 2 440.789987 879.565421 NaN NaN NaN NaN NaN NaN NaN 23.432 1 27.136 26.636 27.636 3.7042 0 0 0 0.40746 1 2894 2894 0.69038 0 1 10469 4240 6479 6485 12977 12977 0.12082091613558532 GKVHLFMKE 9 Unmodified _GKVHLFMKE_ 0 0 0 REV__CON__Q3MHN2 REV__CON__Q3MHN2 MSMS UPN48_class_I_Rep_2 6 544.8018188476562 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 19.302 1 22.952 22.452 23.452 3.6497 0 0 0 0.39518 1 1447 1447 1.8442 0.19162 1 + + 10470 17496 6480 6486 12978 12978 0.04454679842137921 GKVKNRAGPLT 11 Unmodified _GKVKNRAGPLT_ 0 0 0 REV__ENSG00000196440|ENST00000423738|ARMCX4 REV__ENSG00000196440|ENST00000423738|ARMCX4 MSMS UPN46_class_I_Rep_3 1 570.8480834960938 2 570.846022 1139.67749 NaN NaN NaN NaN NaN NaN NaN 31.952 1 31.952 31.452 32.452 0 0 0 0 0.38417 1 5405 5405 1.3295 0.63916 1 + 10471 21041 6481 6487 12979 12979 0.11323900899878936 GKVKPFEPVF 10 Unmodified _GKVKPFEPVF_ 0 0 0 L1MB5_dup7126|chr14:102862421-102864141:-|1.5885296113988263|0.021279450399602|6.22|151.0|72|1|anti-sense L1MB5_dup7126|chr14:102862421-102864141:-|1.5885296113988263|0.021279450399602|6.22|151.0|72|1|anti-sense L1MB5_dup7126|chr14:102862421-102864141:-|1.5885296113988263|0.021279450399602|6.22|151.0|72|1|anti-sense MSMS UPN48_class_I_Rep_3 7 574.3292846679688 2 574.329142 1146.64373 NaN NaN NaN NaN NaN NaN NaN 76.967 1 80.568 80.068 81.068 3.6016 0 0 0 0.53105 1 18151 18151 3.9444 1.6417 1 10472 10643 6482 6488 12980 12980 0.0762747940814279 GKVLPALL 8 Unmodified _GKVLPALL_ 0 0 0 ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH ENST00000559217.1_1_15:80469766-80478548:+|nuORF ENST00000559217.1_1_15:80469766-80478548:+|nuORF MSMS UPN47_class_I_Rep_1 2 405.77484130859375 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 42.19 1 45.869 45.369 46.369 3.6792 0 0 0 0.40746 1 8551 8551 0.69038 0 1 10473 1672 6483 6489 12981 12981 0.12508768633449563 GKVMRLRKLA 10 Unmodified _GKVMRLRKLA_ 0 0 0 nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1 nc|ENSG00000101871|O15344-2|MID1 nc|ENSG00000101871|O15344-2|MID1 MSMS UPN47_class_I_Rep_3 4 586.7935791015625 2 586.376435 1170.73832 NaN NaN NaN NaN NaN NaN NaN 40.917 1 44.154 43.654 44.654 3.2372 0 0 0 0.53105 1 8247 8247 0.40072 0 1 10474 1590 6484 6490 12982 12982 0.1597771467847906 GKVQAADSWGR 11 Unmodified _GKVQAADSWGR_ 0 0 0 REV__MLT1D_dup18895|chr19:5072667-5073211:-|1.0263080708079055|0.1423781508656693|2.85|151.0|7|2|sense REV__MLT1D_dup18895|chr19:5072667-5073211:-|1.0263080708079055|0.1423781508656693|2.85|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 587.8003540039062 2 587.801811 1173.58907 NaN NaN NaN NaN NaN NaN NaN 40.171 1 43.912 43.412 44.412 3.7413 0 0 0 0.38417 1 7207 7207 2.4985 0.43874 1 + 10475 31676 6485 6491 12983 12983 0.009218605894147913 GKVRKVMLY 9 Unmodified _GKVRKVMLY_ 0 0 0 MLT1J_dup4882|chr5:65566146-65566579:-|1.6106472554823037|0.1758033266538624|3.2|151.0|21|1|anti-sense MLT1J_dup4882|chr5:65566146-65566579:-|1.6106472554823037|0.1758033266538624|3.2|151.0|21|1|anti-sense MLT1J_dup4882|chr5:65566146-65566579:-|1.6106472554823037|0.1758033266538624|3.2|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3322143554688 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 63.882 1 67.34 66.84 67.84 3.4578 0 0 0 0.39428 1 14416 14416 2.0598 0.21551 1 10476 16461 6486 6492 12984 12984 0.10515245630199388 GKWILWRHK 9 Unmodified _GKWILWRHK_ 0 0 0 HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|94|1|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|94|1|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|94|1|anti-sense MSMS UPN48_class_I_Rep_3 7 408.5772705078125 3 408.576854 1222.70873 NaN NaN NaN NaN NaN NaN NaN 81.812 1 85.497 84.997 85.997 3.685 0 0 0 0.39887 1 19380 19380 0.96228 0 1 10477 8129 6487 6493 12985 12985 0.10628518724615788 GKWLCVFV 8 Unmodified _GKWLCVFV_ 0 0 0 REV__ENSG00000139154|ENST00000266508|AEBP2 REV__ENSG00000139154|ENST00000266508|AEBP2 MULTI-MSMS UPN46_class_I_Rep_3 1 476.259033203125 2 476.259674 950.504795 -0.34899 -0.00016621 -0.26487 -0.00012615 -0.61386 -0.00029236 476.25943793719506 14.176 0.40195 14.176 14.053 14.455 0 56 46 2 0 0 0 0.82752 1 622 622 0.69038 0.088878 1 39443 + 10478 19305 6488 6494 12986 12986 0.0275623823896467 GKWVTIPKP 9 Unmodified _GKWVTIPKP_ 0 0 0 REV__ENSG00000156103|ENST00000286614|MMP16 REV__ENSG00000156103|ENST00000286614|MMP16 MSMS UPN47_class_I_Rep_2 3 513.3086547851562 2 513.310752 1024.60695 NaN NaN NaN NaN NaN NaN NaN 87.973 1 91.421 90.921 91.921 3.4471 0 0 0 0.39518 1 21874 21874 1.8442 1.1539 1 + 10479 18850 6489 6495 12987 12987 0.09563227582225409 GKYKYVVN 8 Unmodified _GKYKYVVN_ 0 0 0 REV__L1MB4_dup7486|chr16:69585360-69586037:+|1.4052998279751747|0.0138009570785905|6.67|151.0|16|2|sense REV__L1MB4_dup7486|chr16:69585360-69586037:+|1.4052998279751747|0.0138009570785905|6.67|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 485.7725524902344 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 111.57 1 115.09 114.59 115.59 3.5226 0 0 0 0.40604 1 27160 27160 2.5775 0 1 + 10480 26019 6490 6496 12988 12988 0.0423837527713431 GKYTNTTWGV 10 Unmodified _GKYTNTTWGV_ 0 0 0 L1MC1_dup535|chr1:116523574-116524234:-|1.704478327876367|0.2876883845917636|2.57|151.0|10|1|sense L1MC1_dup535|chr1:116523574-116524234:-|1.704478327876367|0.2876883845917636|2.57|151.0|10|1|sense L1MC1_dup535|chr1:116523574-116524234:-|1.704478327876367|0.2876883845917636|2.57|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.2828369140625 2 563.780013 1125.54547 0.51757 0.00029179 -0.46899 -0.00026441 0.048578 2.7388E-05 563.7796009788046 54.867 0.88346 58.186 57.83 58.713 3.3187 84 48 2 0 0 0 0.53004 1 12540 12540 8.1555 0.54658 1 160250 10481 11162 6491 6497 12989 12989 -0.012277489077405335 GLADITQQL 9 Unmodified _GLADITQQL_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-SECPEP UPN47_class_I_Rep_1 2 479.7637023925781 2 479.763832 957.513111 0.097059 4.6565E-05 -0.098745 -4.7374E-05 -0.0016858 -8.088E-07 479.7637899510996 65.565 0.59953 68.92 68.64 69.239 3.3557 50 31 3 0 0 0 0.044151 1 15685 15685 43.772 7.2662 1 110390 10482 4294 6492 6498 12990 12990 0.032654636892857525 GLADITQQL 9 Unmodified _GLADITQQL_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-MSMS UPN47_class_I_Rep_2 3 479.7638244628906 2 479.763832 957.513111 0.094413 4.5296E-05 0.15063 7.2265E-05 0.24504 0.00011756 479.7638595188867 65.758 0.61441 69.017 68.848 69.462 3.2588 45 36 2 0 0 0 0.088679 1 15763 15763 36.506 12.716 1 163460 10483 4294 6492 6498 12991 12991 0.032654636892857525 GLADITQQL 9 Unmodified _GLADITQQL_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-SECPEP UPN47_class_I_Rep_3 4 479.7637023925781 2 479.763832 957.513111 0.072441 3.4754E-05 0.23696 0.00011369 0.3094 0.00014844 479.7638579063396 65.877 0.54957 69.063 68.728 69.278 3.1853 52 31 2 0 0 0 0.044454 1 15828 15828 47.594 11.467 1 124030 10484 4294 6492 6498 12992 12992 0.032654636892857525 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS UPN46_class_I_Rep_3 1 513.2870483398438 2 513.286943 1024.55933 0.28028 0.00014387 0.16241 8.3365E-05 0.4427 0.00022723 513.2869690387778 71.986 0.19831 71.986 71.906 72.104 0 29 16 3 0 0 0 0.279 1 16618 16618 15.248 1.3424 1 542980 10485 1259 6493 6499 12993 12993 0.04803528591378381 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS UPN47_class_I_Rep_1 2 513.2870483398438 2 513.286943 1024.55933 0.21836 0.00011208 0.046605 2.3922E-05 0.26496 0.000136 513.2868510900427 66.072 1.2679 69.429 69.119 70.387 3.3576 181 89 4 0 0 0 0.033731 6 15826 15748;15787;15826;15863;15901;15940 55.503 22.717 1 832840 10486 1259 6493 6499 12994;12995;12996;12997;12998;12999 12996 0.04803528591378381 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS UPN47_class_I_Rep_2 3 513.2871704101562 2 513.286943 1024.55933 0.0398 2.0429E-05 0.31075 0.0001595 0.35055 0.00017993 513.2870151392362 66.529 1.1574 69.788 69.293 70.451 3.2588 148 78 3 0 0 0 0.033731 5 15912 15912;15954;15991;16027;16068 55.503 22.717 1 711910 10487 1259 6493 6499 13000;13001;13002;13003;13004 13000 0.04803528591378381 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS UPN47_class_I_Rep_3 4 513.287109375 2 513.286943 1024.55933 0.26764 0.00013738 0.11512 5.9087E-05 0.38276 0.00019646 513.2869250921092 66.35 0.36931 69.535 69.253 69.622 3.1853 78 27 4 0 0 0 0.053261 2 16017 15978;16017 47.594 21.326 1 626290 10488 1259 6493 6499 13005;13006 13006 0.04803528591378381 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS UPN47_class_I_Rep_3 4 513.2869262695312 2 513.286943 1024.55933 0.26818 0.00013765 0.056431 2.8965E-05 0.32461 0.00016662 513.2868946884699 66.533 0.68835 69.718 69.608 70.296 3.1853 126 53 3 0 0 0 0.019142 3 16054 16054;16141;16182 63.961 24.011 1 680930 10489 1259 6493 6499 13007;13008;13009 13007 0.04803528591378381 GLADLSELQL 10 Unmodified _GLADLSELQL_ 0 0 0 ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron;ENSG00000103657.14,HERC1,chr15,-,I7.1,63755326,63756436|26|7.44|2|intron;ENSG00000103657.14,HERC1,chr15,-,I7.1,63755326,63756436|26|7.44|7|intron;ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MSMS UPN47_class_I_Rep_1 2 529.790771484375 2 529.790047 1057.56554 NaN NaN NaN NaN NaN NaN NaN 82.247 1 85.759 85.259 86.259 3.5122 0 0 0 0.53105 1 20544 20544 17.443 0 1 10490 1668 6494 6500 13010 13010 0.03906002032226752 GLADLSELQL 10 Unmodified _GLADLSELQL_ 0 0 0 ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron;ENSG00000103657.14,HERC1,chr15,-,I7.1,63755326,63756436|26|7.44|2|intron;ENSG00000103657.14,HERC1,chr15,-,I7.1,63755326,63756436|26|7.44|7|intron;ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MSMS UPN47_class_I_Rep_1 2 529.7901000976562 2 529.790047 1057.56554 NaN NaN NaN NaN NaN NaN NaN 82.413 1 85.926 85.426 86.426 3.5122 0 0 0 0.53105 1 20588 20588 17.443 0 1 10491 1668 6494 6500 13011 13011 0.03906002032226752 GLADLSELQL 10 Unmodified _GLADLSELQL_ 0 0 0 ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron;ENSG00000103657.14,HERC1,chr15,-,I7.1,63755326,63756436|26|7.44|2|intron;ENSG00000103657.14,HERC1,chr15,-,I7.1,63755326,63756436|26|7.44|7|intron;ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MULTI-MSMS UPN47_class_I_Rep_3 4 529.7903442382812 2 529.790047 1057.56554 0.41096 0.00021772 -0.04556 -2.4137E-05 0.3654 0.00019359 529.789841054801 82.301 0.44031 85.638 85.485 85.925 3.337 75 52 2 0 0 0 0.21626 4 20637 20602;20620;20637;20676 42.312 6.7002 1 132300 10492 1668 6494 6500 13012;13013;13014;13015 13014 0.03906002032226752 GLADPSALTQA 11 Unmodified _GLADPSALTQA_ 0 0 0 nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 nc|ENSG00000124535|Q96S55-2|WRNIP1 MSMS UPN46_class_I_Rep_3 1 522.2726440429688 2 522.272021 1042.52949 NaN NaN NaN NaN NaN NaN NaN 57.451 1 57.451 56.951 57.951 0 0 0 0 0.30112 1 12589 12589 12.175 2.1008 1 10493 2470 6495 6501 13016 13016 0.009925448553985916 GLAESNINI 9 Unmodified _GLAESNINI_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 465.74810791015625 2 465.748182 929.481811 -0.074956 -3.4911E-05 -0.36599 -0.00017046 -0.44095 -0.00020537 465.7479780397664 54.865 0.61674 58.05 57.821 58.438 3.1856 50 35 2 0 0 0 0.17979 1 12504 12504 22.658 5.5452 1 88401 10494 734 6496 6502 13017 13017 0.014248906551870277 GLAESNINI 9 Unmodified _GLAESNINI_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 465.748182 929.481811 0.044487 2.072E-05 -0.38937 -0.00018135 -0.34488 -0.00016063 465.74798980099126 54.596 0.55537 58.097 57.832 58.387 3.5014 0.016732 2.2697E-06 NaN 22.658 47 31 2 NaN NaN NaN NaN 0 NaN NaN 0 104210 10495 734 6496 6502 0.014248906551870277 GLAESNINI 9 Unmodified _GLAESNINI_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 465.748182 929.481811 0.088038 4.1003E-05 -0.43083 -0.00020066 -0.3428 -0.00015966 465.7478911269167 54.775 0.51823 58.094 57.83 58.348 3.3187 0.013668 -3.6352E-05 NaN 22.658 44 26 3 NaN NaN NaN NaN 0 NaN NaN 0 110660 10496 734 6496 6502 0.014248906551870277 GLAGARHK 8 Unmodified _GLAGARHK_ 0 0 0 ENST00000426615.3_1_2:177042826-177043225:+|nuORF ENST00000426615.3_1_2:177042826-177043225:+|nuORF ENST00000426615.3_1_2:177042826-177043225:+|nuORF MSMS UPN47_class_I_Rep_2 3 405.5750732421875 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 91.649 1 95.11 94.61 95.61 3.4613 0 0 0 0.40604 1 22679 22679 2.5775 0.27475 1 10497 6706 6497 6503 13018 13018 0.05487488368510185 GLAGARHK 8 Unmodified _GLAGARHK_ 0 0 0 ENST00000426615.3_1_2:177042826-177043225:+|nuORF ENST00000426615.3_1_2:177042826-177043225:+|nuORF ENST00000426615.3_1_2:177042826-177043225:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 405.2405700683594 2 405.240661 808.46677 -0.11069 -4.4856E-05 0.25963 0.00010521 0.14894 6.0357E-05 405.24071238768533 76.419 1.0994 79.929 79.51 80.61 3.5102 309 126 3 0 0 0 0.82752 1 18127 18127 2.3027 0 1 580380 10498 6706 6497 6503 13019 13019 0.05487488368510185 GLAKAHSK 8 Unmodified _GLAKAHSK_ 0 0 0 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF MSMS UPN48_class_I_Rep_1 5 406.24969482421875 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 100.03 1 103.64 103.14 104.14 3.6084 0 0 0 0.40643 1 24158 24158 2.0598 1.2661 1 + 10499 18464 6498 6504 13020 13020 0.058369527914123864 GLAKAHSK 8 Unmodified _GLAKAHSK_ 0 0 0 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF MSMS UPN48_class_I_Rep_1 5 406.24853515625 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 100.25 1 103.86 103.36 104.36 3.6084 0 0 0 0.4044 1 24214 24214 4.756 2.1785 1 + 10500 18464 6498 6504 13021 13021 0.058369527914123864 GLAKAHSK 8 Unmodified _GLAKAHSK_ 0 0 0 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF MSMS UPN48_class_I_Rep_2 6 406.2436828613281 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 99.903 1 103.66 103.16 104.16 3.7575 0 0 0 0.40643 1 23731 23731 2.0598 1.3694 1 + 10501 18464 6498 6504 13022 13022 0.058369527914123864 GLAKAPLRRAQ 11 Unmodified _GLAKAPLRRAQ_ 0 0 0 nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH nc|ENSG00000118094|O43280-2|TREH nc|ENSG00000118094|O43280-2|TREH MULTI-MSMS UPN46_class_I_Rep_3 1 590.8671875 2 590.867289 1179.72002 0.54984 0.00032488 -0.58276 -0.00034434 -0.032925 -1.9454E-05 590.8668112590328 99.422 0.063881 99.422 99.381 99.445 0 8 6 2 0 0 0 0.4608 1 24223 24223 8.7454 0.58988 1 131090 10502 2241 6499 6505 13023 13023 0.13735296028130506 GLAKAPLRRAQ 11 Unmodified _GLAKAPLRRAQ_ 0 0 0 nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH nc|ENSG00000118094|O43280-2|TREH nc|ENSG00000118094|O43280-2|TREH MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 590.867289 1179.72002 0.63467 0.00037501 -0.38412 -0.00022696 0.25056 0.00014805 590.8664926121559 95.899 0.079918 99.374 99.332 99.412 3.4753 -0.024152 0.00019143 NaN 8.7454 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 96409 10503 2241 6499 6505 0.13735296028130506 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.2812805175781 2 450.28166 898.548768 0.09347 4.2088E-05 -0.65776 -0.00029618 -0.56429 -0.00025409 450.2813438473312 59.818 0.69296 63.217 62.941 63.634 3.3982 64 44 2 0 0 0 0.24936 3 13893 13893;13938;13955 17.113 3.2068 1 101220 10504 4376 6500 6506 13024;13025;13026 13024 0.09543545936935516 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 450.2816162109375 2 450.28166 898.548768 -0.11345 -5.1084E-05 -0.41836 -0.00018838 -0.53181 -0.00023947 450.2813823757259 60.369 0.38044 63.634 63.298 63.679 3.2654 31 23 2 0 0 0 0.32682 3 14069 14069;14074;14122 12.241 1.4167 1 75901 10505 4376 6500 6506 13027;13028;13029 13027 0.09543545936935516 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.2815246582031 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 60.091 1 63.256 62.756 63.756 3.1651 0 0 0 0.3377 1 14086 14086 8.7454 1.4562 1 10506 4376 6500 6506 13030 13030 0.09543545936935516 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.281494140625 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 60.269 1 63.434 62.934 63.934 3.1651 0 0 0 0.11827 1 14141 14141 21.537 6.6987 1 10507 4376 6500 6506 13031 13031 0.09543545936935516 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.28167724609375 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 60.522 1 63.687 63.187 64.187 3.1651 0 0 0 0.20399 1 14218 14218 16.149 1.3108 1 10508 4376 6500 6506 13032 13032 0.09543545936935516 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 450.28166 898.548768 -0.10556 -4.7533E-05 -0.50216 -0.00022611 -0.60772 -0.00027364 450.2813440190412 59.974 0.15931 63.247 63.124 63.283 3.2731 0.015199 0.00012805 NaN 17.113 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 75095 10509 4376 6500 6506 0.09543545936935516 GLANILVNSP 10 Unmodified _GLANILVNSP_ 0 0 0 REV__nc|ENSG00000108984|P52564-2|MAP2K6 REV__nc|ENSG00000108984|P52564-2|MAP2K6 MSMS UPN48_class_I_Rep_1 5 499.2954406738281 2 499.287474 996.560395 NaN NaN NaN NaN NaN NaN NaN 67.929 1 71.381 70.881 71.881 3.4517 0 0 0 0.53105 1 15651 15651 18.146 1.0598 1 + 10510 18399 6501 6507 13033 13033 0.061977429602734446 GLAQYLKQY 9 Unmodified _GLAQYLKQY_ 0 0 0 ENSG00000184905|ENST00000372780|TCEAL2 ENSG00000184905|ENST00000372780|TCEAL2 ENSG00000184905|ENST00000372780|TCEAL2 MULTI-MSMS UPN48_class_I_Rep_1 5 542.2952270507812 2 542.295299 1082.57605 0.38677 0.00020974 -0.20269 -0.00010992 0.18408 9.9825E-05 542.2950901378747 48.342 0.5125 51.866 51.624 52.136 3.5239 55 32 2 0 0 0 0.3898 1 9652 9652 8.5933 0.68312 1 150240 10511 5070 6502 6508 13034 13034 0.03806029477323136 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS UPN46_class_I_Rep_3 1 452.24261474609375 2 452.242732 902.470912 0.13722 6.2054E-05 0.011409 5.1595E-06 0.14862 6.7214E-05 452.2426103553291 49.866 0.51371 49.866 49.674 50.188 0 134 54 3 0 0 0 2.6985E-05 3 10534 10458;10493;10534 157.8 75.905 1 1082600 10512 5834 6503 6509 13035;13036;13037 13037 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS UPN47_class_I_Rep_1 2 452.2425231933594 2 452.242732 902.470912 -0.19303 -8.7296E-05 -0.11204 -5.067E-05 -0.30507 -0.00013797 452.24257753945295 45.927 0.94215 49.627 49.258 50.201 3.6999 143 57 4 0 0 0 0.011492 4 9671 9622;9671;9712;9766 142.08 63.93 1 762840 10513 5834 6503 6509 13038;13039;13040;13041 13039 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS UPN47_class_I_Rep_2 3 452.242431640625 2 452.242732 902.470912 -0.31454 -0.00014225 -0.035368 -1.5995E-05 -0.34991 -0.00015825 452.2426073464951 46.223 0.92627 49.576 49.257 50.183 3.3534 172 64 4 0 0 0 0.0055546 6 9789 9740;9749;9789;9826;9866;9909 142.08 60.467 1 838190 10514 5834 6503 6509 13042;13043;13044;13045;13046;13047 13044 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS UPN47_class_I_Rep_3 4 452.24261474609375 2 452.242732 902.470912 -0.36935 -0.00016703 0.06957 3.1462E-05 -0.29978 -0.00013557 452.2426621161445 46.3 1.0817 49.544 49.196 50.277 3.2439 163 67 4 0 0 0 0.006828 5 9997 9834;9871;9913;9953;9997 142.08 70.946 1 919590 10515 5834 6503 6509 13048;13049;13050;13051;13052 13052 0.015774882809068913 GLATVLLKP 9 Unmodified _GLATVLLKP_ 0 0 0 ENSG00000249715|ENST00000624922|FER1L5;ENST00000505256.6_1_2:97312155-97317763:+|nuORF ENSG00000249715|ENST00000624922|FER1L5 ENSG00000249715|ENST00000624922|FER1L5 MSMS UPN48_class_I_Rep_3 7 456.3008728027344 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 55.377 1 58.933 58.433 59.433 3.5554 0 0 0 0.38478 1 11733 11733 4.3292 0 1 10516 5736 6504 6510 13053 13053 0.1262842283366581 GLAVPGCPRR 10 Unmodified _GLAVPGCPRR_ 0 0 0 ENST00000481869.1_1_1:934427-935027:-|nuORF ENST00000481869.1_1_1:934427-935027:-|nuORF ENST00000481869.1_1_1:934427-935027:-|nuORF MSMS UPN47_class_I_Rep_1 2 513.2874145507812 2 513.287285 1024.56002 NaN NaN NaN NaN NaN NaN NaN 67.259 1 70.62 70.12 71.12 3.3611 0 0 0 0.53105 1 16163 16163 1.6526 0.96225 1 10517 7001 6505 6511 13054 13054 0.04872044759417804 GLAVRAALLAG 11 Unmodified _GLAVRAALLAG_ 0 0 0 ENST00000418460.2_1_1:232941107-232941410:+|nuORF ENST00000418460.2_1_1:232941107-232941410:+|nuORF ENST00000418460.2_1_1:232941107-232941410:+|nuORF MSMS UPN48_class_I_Rep_2 6 506.3193359375 2 506.319109 1010.62366 NaN NaN NaN NaN NaN NaN NaN 61.871 1 65.345 64.845 65.845 3.4738 0 0 0 0.35398 1 13780 13780 8.7454 0.15213 1 10518 6666 6506 6512 13055 13055 0.11877728468175519 GLAYKKRPS 9 Unmodified _GLAYKKRPS_ 0 0 0 REV__ENST00000554856.1_1_14:96890054-96890204:-|nuORF REV__ENST00000554856.1_1_14:96890054-96890204:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 510.30340576171875 2 510.303458 1018.59236 0.31885 0.00016271 -2.0305 -0.0010362 -1.7116 -0.00087345 510.3023537806305 107.99 0.41071 107.99 107.91 108.32 0 66 34 3 0 0 0 0.36392 3 26344 26344;26378;26395 10.074 2.1638 1 62658000 + 10519 22985 6507 6513 13056;13057;13058 13056 0.08381155434096854 GLAYKKRPS 9 Unmodified _GLAYKKRPS_ 0 0 0 REV__ENST00000554856.1_1_14:96890054-96890204:-|nuORF REV__ENST00000554856.1_1_14:96890054-96890204:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 510.3033447265625 2 510.303458 1018.59236 0.31873 0.00016265 0.19043 9.7179E-05 0.50916 0.00025983 510.30337544432143 108.39 0.21861 108.39 108.32 108.54 0 32 24 2 0 0 0 0.43153 1 26495 26495 6.2058 0 1 3470500 + 10520 22985 6507 6513 13059 13059 0.08381155434096854 GLDALKVTV 9 Unmodified _GLDALKVTV_ 0 0 0 ENST00000447818.2_1_X:79827372-79827747:-|nuORF;ENSG00000159399|ENST00000290573|HK2 ENST00000447818.2_1_X:79827372-79827747:-|nuORF ENST00000447818.2_1_X:79827372-79827747:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 457.7904052734375 2 458.279118 914.543683 -0.18015 -8.2558E-05 0.083702 3.8359E-05 -0.096446 -4.4199E-05 458.2789852415129 55.688 0.53278 58.866 58.623 59.156 3.1779 49 34 2 0 0 0 0.11446 1 12774 12774 10.151 4.4187 1 81392 10521 3836 6508 6514 13060 13060 0.08299242074326685 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MSMS UPN46_class_I_Rep_3 1 510.2740173339844 2 510.274032 1018.53351 0.3187 0.00016263 -0.19009 -9.7E-05 0.12861 6.5626E-05 510.2739172436399 88.378 0.29564 88.378 88.227 88.522 0 33 28 2 0 0 0 0.14216 1 21205 21205 26.268 0 1 635580 10522 5437;16801 6509 6515 13061 13061 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MSMS UPN47_class_I_Rep_1 2 510.2740478515625 2 510.274032 1018.53351 0.29219 0.0001491 0.024196 1.2347E-05 0.31639 0.00016144 510.2738932256494 83.623 0.92045 87.189 86.751 87.671 3.5655 283 108 4 0 0 0 0.0063213 6 20903 20837;20870;20903;20936;21001;21033 89.401 10.395 1 1136600 10523 5437;16801 6509 6515 13062;13063;13064;13065;13066;13067 13064 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-SECPEP UPN47_class_I_Rep_1 2 510.775634765625 2 510.274032 1018.53351 0.29595 0.00015101 0.43998 0.00022451 0.73592 0.00037552 510.2740887685267 84.406 0.19543 87.971 87.825 88.02 3.5655 28 22 2 0 0 0 0.083569 1 21099 21099 26.268 4.7312 1 894800 10524 5437;16801 6509 6515 13068 13068 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.2739562988281 2 510.274032 1018.53351 0.22727 0.00011597 -0.034087 -1.7394E-05 0.19319 9.8579E-05 510.27388256558885 83.657 1.3279 87.069 86.692 88.019 3.4116 414 169 4 0 0 0 0.0053074 9 20849 20782;20815;20849;20881;20914;20947;20977;21008;21046 79.596 7.799 1 1032400 10525 5437;16801 6509 6515 13069;13070;13071;13072;13073;13074;13075;13076;13077 13071 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MSMS UPN47_class_I_Rep_3 4 510.2740478515625 2 510.274032 1018.53351 0.30028 0.00015323 0.064956 3.3145E-05 0.36524 0.00018637 510.27392564118844 83.688 1.2806 87.038 86.641 87.921 3.35 407 151 4 0 0 0 0.0051925 9 20944 20914;20944;20980;21012;21045;21075;21108;21141;21168 122.18 29.688 1 3231500 10526 5437;16801 6509 6515 13078;13079;13080;13081;13082;13083;13084;13085;13086 13079 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 510.274032 1018.53351 0.23649 0.00012067 -0.93214 -0.00047565 -0.69565 -0.00035497 510.27347779267694 84.711 0.1301 88.134 88.031 88.161 3.4232 0.066079 -0.00058683 NaN 26.268 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 153650 10527 5437;16801 6509 6515 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 510.274032 1018.53351 0.30209 0.00015415 -0.086157 -4.3964E-05 0.21593 0.00011018 510.2738613740722 84.602 0.3037 87.963 87.933 88.237 3.3615 -0.10481 0.00027654 NaN 26.268 63 42 2 NaN NaN NaN NaN 0 NaN NaN 0 132390 10528 5437;16801 6509 6515 0.024986343491036678 GLDLGPGEPPH 11 Unmodified _GLDLGPGEPPH_ 0 0 0 LTR41C_dup346|chr7:74827330-74827630:-|1.7955818779144668|0.1939410928798665|3.21|151.0|6|3|sense LTR41C_dup346|chr7:74827330-74827630:-|1.7955818779144668|0.1939410928798665|3.21|151.0|6|3|sense LTR41C_dup346|chr7:74827330-74827630:-|1.7955818779144668|0.1939410928798665|3.21|151.0|6|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.7722778320312 2 544.772188 1087.52982 -0.36068 -0.00019649 0.30379 0.0001655 -0.056888 -3.0991E-05 544.7722484935242 19.352 1.5663 22.704 22.082 23.648 3.3514 332 154 3 0 0 0 0.65271 1 2043 2043 2.9952 0 1 229260 10529 15643 6510 6516 13087 13087 -0.0104403542475211 GLDPKTPMEM 10 Unmodified _GLDPKTPMEM_ 0 0 0 nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3 nc|ENSG00000151322|Q8IXF0-4|NPAS3 nc|ENSG00000151322|Q8IXF0-4|NPAS3 MSMS UPN48_class_I_Rep_3 7 559.8045654296875 2 559.76466 1117.51477 NaN NaN NaN NaN NaN NaN NaN 112.76 1 116.42 115.92 116.92 3.6568 0 0 0 0.53105 1 26800 26800 1.1933 0.39971 1 10530 3584 6511 6517 13088 13088 -0.03928986608639207 GLDVDGIYRV 10 Unmodified _GLDVDGIYRV_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;chr12:57474703-57475291|69|13.2|0.31|5.43|-|2|ARHGAP9,ARHGAP9|1;ENST00000546704.1_1_12:57868176-57868820:-|nuORF;ENST00000549436.5_1_2:144276854-144461094:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;ENSG00000075884|ENST00000295095|ARHGAP15 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN47_class_I_Rep_1 2 553.7964477539062 2 553.795663 1105.57677 0.41888 0.00023198 -0.62647 -0.00034693 -0.20758 -0.00011496 553.7950802965617 58.331 0.47083 61.753 61.629 62.1 3.4219 47 30 2 0 0 0 0.30373 2 13509 13509;13535 32.037 16.789 1 85089 10531 2417;1151 6512 6518 13089;13090 13089 0.02820824126365551 GLDVDGIYRV 10 Unmodified _GLDVDGIYRV_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;chr12:57474703-57475291|69|13.2|0.31|5.43|-|2|ARHGAP9,ARHGAP9|1;ENST00000546704.1_1_12:57868176-57868820:-|nuORF;ENST00000549436.5_1_2:144276854-144461094:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;ENSG00000075884|ENST00000295095|ARHGAP15 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN47_class_I_Rep_2 3 554.2966918945312 2 553.795663 1105.57677 0.51581 0.00028565 -0.86881 -0.00048114 -0.353 -0.00019549 553.7951055153654 58.662 0.47765 61.944 61.687 62.164 3.2818 47 26 2 0 0 0 0.31951 4 13606 13549;13561;13606;13653 27.223 15.221 1 98019 10532 2417;1151 6512 6518 13091;13092;13093;13094 13093 0.02820824126365551 GLDVDGIYRV 10 Unmodified _GLDVDGIYRV_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;chr12:57474703-57475291|69|13.2|0.31|5.43|-|2|ARHGAP9,ARHGAP9|1;ENST00000546704.1_1_12:57868176-57868820:-|nuORF;ENST00000549436.5_1_2:144276854-144461094:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;ENSG00000075884|ENST00000295095|ARHGAP15 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN47_class_I_Rep_3 4 554.29638671875 2 553.795663 1105.57677 0.33886 0.00018766 -0.54863 -0.00030383 -0.20977 -0.00011617 553.7951859837312 58.746 0.57495 61.912 61.655 62.23 3.1658 60 35 2 0 0 0 0.51021 1 13636 13636 10.8 2.644 1 72539 10533 2417;1151 6512 6518 13095 13095 0.02820824126365551 GLELLFETC 9 Unmodified _GLELLFETC_ 0 0 0 L1MB8_dup10625|chr10:119056245-119056472:+|1.0378910630595697|0.0388639471117016|4.74|151.0|2|1|sense L1MB8_dup10625|chr10:119056245-119056472:+|1.0378910630595697|0.0388639471117016|4.74|151.0|2|1|sense L1MB8_dup10625|chr10:119056245-119056472:+|1.0378910630595697|0.0388639471117016|4.74|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 512.772705078125 2 512.754618 1023.49468 NaN NaN NaN NaN NaN NaN NaN 76.769 1 80.038 79.538 80.538 3.269 0 0 0 0.38639 1 19097 19097 3.9444 0 1 10534 10903 6513 6519 13096 13096 -0.016124142769285754 GLERTLSLYK 10 Unmodified _GLERTLSLYK_ 0 0 0 REV__HERVH-int_dup5578|chr19:52628195-52631191:+|1.612781811949883|0.3794519770853735|2.09|151.0|144|3|anti-sense REV__HERVH-int_dup5578|chr19:52628195-52631191:+|1.612781811949883|0.3794519770853735|2.09|151.0|144|3|anti-sense MSMS UPN46_class_I_Rep_3 1 590.3409423828125 2 590.340238 1178.66592 NaN NaN NaN NaN NaN NaN NaN 23.392 1 23.392 22.892 23.892 0 0 0 0 0.53105 1 2926 2926 1.3295 0 1 + 10535 23694 6514 6520 13097 13097 0.08373659085918916 GLFALSEVEL 10 Unmodified _GLFALSEVEL_ 0 0 0 REV__HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|373|3|anti-sense REV__HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|373|3|anti-sense MSMS UPN47_class_I_Rep_3 4 539.2944946289062 2 539.294965 1076.57538 NaN NaN NaN NaN NaN NaN NaN 81.515 1 84.838 84.338 85.338 3.3231 0 0 0 0.53105 1 20402 20402 36.127 0.51477 1 + 10536 23867 6515 6521 13098 13098 0.040151900376031335 GLFCIDNH 8 Unmodified _GLFCIDNH_ 0 0 0 L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|200|1|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|200|1|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|200|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 459.710693359375 2 459.710545 917.406537 -0.075249 -3.4593E-05 0.22409 0.00010302 0.14885 6.8426E-05 459.7106994343619 96.862 1.6942 100.28 99.313 101.01 3.414 485 239 3 0 0 0 0.82752 1 24021 24021 5.7604 0.52976 1 9614400 10537 14402 6516 6522 13099 13099 -0.055469900769026026 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_1 2 468.75531005859375 2 468.755475 935.496398 0.18007 8.4411E-05 -0.57419 -0.00026916 -0.39412 -0.00018475 468.7551708546 87.48 0.38721 91.117 90.798 91.185 3.6372 62 45 2 0 0 0 0.037922 1 21834 21834 53.833 17.706 1 252860 10538 834 6517 6523 13100 13100 0.026069628033155823 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_1 2 468.75494384765625 2 468.755475 935.496398 0.18144 8.5052E-05 -0.70183 -0.00032899 -0.52039 -0.00024394 468.7551080884237 87.625 0.18365 91.263 91.185 91.369 3.6372 27 21 2 0 0 0 0.066633 1 21895 21895 41.84 9.5341 1 71190 10539 834 6517 6523 13101 13101 0.026069628033155823 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_2 3 468.7557067871094 2 468.755475 935.496398 0.17491 8.1991E-05 -0.40712 -0.00019084 -0.23221 -0.00010885 468.75521987934167 87.404 0.76883 90.851 90.614 91.383 3.4471 147 96 2 0 0 0 0.1249 1 21732 21732 29.082 9.8246 1 387500 10540 834 6517 6523 13102 13102 0.026069628033155823 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_3 4 468.7552185058594 2 468.755475 935.496398 0.0055011 2.5787E-06 -0.35527 -0.00016653 -0.34977 -0.00016396 468.75530263516646 87.756 0.27477 91.143 90.925 91.199 3.3873 54 31 2 0 0 0 0.0069816 1 21985 21985 120.45 35.094 1 312850 10541 834 6517 6523 13103 13103 0.026069628033155823 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 468.755475 935.496398 0.0052415 2.457E-06 -0.22096 -0.00010358 -0.21572 -0.00010112 468.7553649803903 87.508 0.22034 90.895 90.757 90.977 3.3873 -0.058951 0.00016254 NaN 53.833 33 25 2 NaN NaN NaN NaN 0 NaN NaN 0 160920 10542 834 6517 6523 0.026069628033155823 GLFFGLLYTL 10 Unmodified _GLFFGLLYTL_ 0 0 0 L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|1|1|sense L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|1|1|sense L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 572.3284912109375 2 572.326068 1142.63758 NaN NaN NaN NaN NaN NaN NaN 98.195 1 102.1 101.6 102.6 3.9022 0 0 0 0.53105 1 23269 23269 3.5965 0 1 10543 13293 6518 6524 13104 13104 0.07196961176623518 GLFFWPKITR 10 Unmodified _GLFFWPKITR_ 0 0 0 nc|ENSG00000115109|Q9HCM4-2|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 MSMS UPN46_class_I_Rep_3 1 632.8630981445312 2 632.863683 1263.71281 NaN NaN NaN NaN NaN NaN NaN 103.15 1 103.15 102.65 103.65 0 0 0 0 0.53105 1 25171 25171 3.5965 0 1 10544 2109 6519 6525 13105 13105 0.0915056342769276 GLFKVLLK 8 Unmodified _GLFKVLLK_ 0 0 0 REV__Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|90|3|sense REV__Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|90|3|sense MSMS UPN46_class_I_Rep_3 1 459.72137451171875 2 459.312764 916.610974 NaN NaN NaN NaN NaN NaN NaN 102.92 1 102.92 102.42 103.42 0 0 0 0 0.40738 1 25115 25115 0.79363 0 1 + 10545 32667 6520 6526 13106 13106 0.1493331707595189 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MSMS UPN47_class_I_Rep_1 2 480.78021240234375 2 480.779285 959.544017 NaN NaN NaN NaN NaN NaN NaN 50.429 1 54.058 53.558 54.558 3.6285 0 0 0 0.32573 1 11057 11057 9.3831 3.6227 1 10546 1309 6521 6527 13107 13107 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS UPN47_class_I_Rep_3 4 480.7792663574219 2 480.779285 959.544017 0.17851 8.5825E-05 -0.67371 -0.00032391 -0.4952 -0.00023808 480.77882235505956 50.916 0.25215 54.132 53.994 54.246 3.2163 12 10 2 0 0 0 0.47763 1 11295 11295 2.9952 0.41776 1 39771 10547 1309 6521 6527 13108 13108 0.06262661794187352 GLFVFMLLK 9 Unmodified _GLFVFMLLK_ 0 0 0 L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|41|1|anti-sense L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|41|1|anti-sense L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|41|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 534.79150390625 2 534.319731 1066.62491 -0.08489 -4.5358E-05 -0.14551 -7.7748E-05 -0.2304 -0.00012311 534.3195630217006 28.316 0.68455 32.082 31.818 32.502 3.7662 90 57 2 0 0 0 0.12182 1 4462 4462 5.2307 0 1 92332 10548 13055 6522 6528 13109 13109 0.09426226512709945 GLGDIMNNKVF 11 Unmodified _GLGDIMNNKVF_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198838|ENST00000634891|RYR3 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MSMS UPN48_class_I_Rep_3 7 604.8134765625 2 604.310623 1206.60669 0.60674 0.00036666 -0.19597 -0.00011843 0.41077 0.00024823 604.310729325613 69.367 0.42058 72.88 72.526 72.946 3.5128 36 31 2 0 0 0 0.62748 1 15952 15952 4.5289 0.19963 1 104820 10549 5444;5471 6523 6529 13110 13110 0.01165439800047352 GLGGGDFETF 10 Unmodified _GLGGGDFETF_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS UPN48_class_I_Rep_2 6 500.2422790527344 2 500.224539 998.434526 NaN NaN NaN NaN NaN NaN NaN 65.184 1 68.663 68.163 69.163 3.4792 0 0 0 0.53105 1 14798 14798 3.9444 1.3669 1 10550 2238 6524 6530 13111 13111 -0.06475388615797328 GLGGVLFGI 9 Unmodified _GLGGVLFGI_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MSMS UPN47_class_I_Rep_1 2 416.7500305175781 2 416.749996 831.485439 NaN NaN NaN NaN NaN NaN NaN 54.905 1 58.406 57.906 58.906 3.5014 0 0 0 0.3264 1 12422 12422 9.3474 0 1 10551 4883 6525 6531 13112 13112 0.06295605219713707 GLGLAPFEVW 10 Unmodified _GLGLAPFEVW_ 0 0 0 MSTA-int_dup1303|chr7:105711266-105712909:-|1.2979253334884877|0.1965025104685211|2.72|151.0|60|1|anti-sense MSTA-int_dup1303|chr7:105711266-105712909:-|1.2979253334884877|0.1965025104685211|2.72|151.0|60|1|anti-sense MSTA-int_dup1303|chr7:105711266-105712909:-|1.2979253334884877|0.1965025104685211|2.72|151.0|60|1|anti-sense MSMS UPN46_class_I_Rep_3 1 544.7911376953125 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 79.897 1 79.897 79.397 80.397 0 0 0 0 0.53105 1 18793 18793 4.3292 0.38484 1 10552 16541 6526 6532 13113 13113 0.0299493096565584 GLGLDSGSWSW 11 Unmodified _GLGLDSGSWSW_ 0 0 0 nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282 nc|ENSG00000170265|Q9UDV7-2|ZNF282 nc|ENSG00000170265|Q9UDV7-2|ZNF282 MULTI-MSMS UPN47_class_I_Rep_1 2 582.7704467773438 2 582.769645 1163.52474 0.38224 0.00022276 0.11428 6.6596E-05 0.49651 0.00028935 582.769726377438 75.224 0.30529 78.628 78.429 78.735 3.4034 33 25 2 0 0 0 0.48412 1 18534 18534 8.1555 0.24537 1 68047 10553 4465 6527 6533 13114 13114 -0.05048339287372983 GLGLTQDDRF 10 Unmodified _GLGLTQDDRF_ 0 0 0 REV__ENST00000481082.1_1_1:157512505-157514867:-|nuORF REV__ENST00000481082.1_1_1:157512505-157514867:-|nuORF MSMS UPN48_class_I_Rep_3 7 561.28466796875 2 561.28292 1120.55129 NaN NaN NaN NaN NaN NaN NaN 55.166 1 58.721 58.221 59.221 3.5554 0 0 0 0.53105 1 11668 11668 4.897 0.141 1 + 10554 19434 6528 6534 13115 13115 -0.004166503960732371 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 420.240234375 2 420.240327 838.466101 -0.063705 -2.6771E-05 -0.14885 -6.2554E-05 -0.21256 -8.9325E-05 420.24019696935335 34.533 0.97152 34.533 34.129 35.1 0 143 71 3 0 0 0 0.088679 2 6167 6167;6211 36.506 3.7205 1 469520 10555 4849 6529 6535 13116;13117 13116 0.040406489287988734 GLGRFWKK 8 Unmodified _GLGRFWKK_ 0 0 0 REV__THE1A-int_dup836|chr9:90819729-90821307:-|4.263475575450317|0.0167617671266983|7.99|151.0|37|3|sense REV__THE1A-int_dup836|chr9:90819729-90821307:-|4.263475575450317|0.0167617671266983|7.99|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.295436 990.57632 NaN NaN NaN NaN NaN NaN NaN 37.597 1 37.597 37.097 38.097 0 0 0 0 0.40604 1 7085 7085 2.5775 0.27475 1 + 10556 32222 6530 6536 13118 13118 0.0806549398784 GLGVRHRVKE 10 Unmodified _GLGVRHRVKE_ 0 0 0 REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 575.8430786132812 2 575.843813 1149.67307 0.4941 0.00028453 -1.3468 -0.00077552 -0.85265 -0.00049099 575.8429193498228 88.13 0.16341 88.13 88.047 88.21 0 21 12 2 0 0 0 0.56333 1 21155 21155 1.4819 0 1 444750 + 10557 31398 6531 6537 13119 13119 0.10422436476960684 GLGVRHRVKE 10 Unmodified _GLGVRHRVKE_ 0 0 0 REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 575.843813 1149.67307 0.4941 0.00028453 -1.3468 -0.00077552 -0.85265 -0.00049099 575.8429193498228 88.13 0.16341 88.13 88.047 88.21 0 -0.027548 6.6968E-05 NaN 1.4819 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 444750 + 10558 31398 6531 6537 0.10422436476960684 GLGVRHRVKE 10 Unmodified _GLGVRHRVKE_ 0 0 0 REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 575.843813 1149.67307 0.48238 0.00027778 -1.6566 -0.00095393 -1.1742 -0.00067615 575.842524953466 84.823 0.046539 88.185 88.144 88.191 3.3615 0.027548 -0.00028985 NaN 1.4819 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 58485 + 10559 31398 6531 6537 0.10422436476960684 GLGVSRNKL 9 Unmodified _GLGVSRNKL_ 0 0 0 REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3 REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3 MULTI-SECPEP UPN47_class_I_Rep_3 4 471.7955017089844 2 472.287808 942.561064 0.04736 2.2368E-05 0.058132 2.7455E-05 0.10549 4.9823E-05 472.28767864521444 89.061 0.11615 92.454 92.411 92.527 3.3931 21 14 2 0 0 0 0.10699 1 22332 22332 6.7232 1.4925 1 209480 + 10560 20152 6532 6538 13120 13120 0.08748582399982752 GLGVSRNKL 9 Unmodified _GLGVSRNKL_ 0 0 0 REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3 REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3 MULTI-MATCH UPN46_class_I_Rep_3 1 2 472.287808 942.561064 0.2453 0.00011585 -0.084387 -3.9855E-05 0.16091 7.5997E-05 472.2878507059983 92.369 0.045326 92.369 92.352 92.397 0 -0.042559 -8.9529E-05 NaN 6.7232 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 64950 + 10561 20152 6532 6538 0.08748582399982752 GLGWHKAQW 9 Unmodified _GLGWHKAQW_ 0 0 0 REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|217|2|anti-sense REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|217|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 541.7815551757812 2 541.780151 1081.54575 -0.21562 -0.00011682 2.0255 0.0010974 1.8099 0.00098056 541.7811657899888 29.189 0.35472 32.512 32.332 32.686 3.3235 36 28 2 0 0 0 0.48846 1 4664 4664 1.8442 0.19162 1 55208 + 10562 23554 6533 6539 13121 13121 0.00823715602791708 GLHDLKIVVL 10 Unmodified _GLHDLKIVVL_ 0 0 0 PrimLTR79_dup56|chr7:67272100-67272556:+|1.2672921757692697|0.0461015625491649|4.78|151.0|31|3|anti-sense PrimLTR79_dup56|chr7:67272100-67272556:+|1.2672921757692697|0.0461015625491649|4.78|151.0|31|3|anti-sense PrimLTR79_dup56|chr7:67272100-67272556:+|1.2672921757692697|0.0461015625491649|4.78|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_2 6 553.8095703125 2 553.850242 1105.68593 NaN NaN NaN NaN NaN NaN NaN 30.236 1 33.871 33.371 34.371 3.6351 0 0 0 0.53105 1 4395 4395 0.40072 0 1 10563 16899 6534 6540 13122 13122 0.13731454816502264 GLHHLRSY 8 Unmodified _GLHHLRSY_ 0 0 0 REV__Tigger3a_dup555|chr2:62007470-62007817:+|1.0789339907752868|0.0072855442894128|7.21|151.0|16|3|sense REV__Tigger3a_dup555|chr2:62007470-62007817:+|1.0789339907752868|0.0072855442894128|7.21|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 491.7635192871094 2 491.764501 981.514448 NaN NaN NaN NaN NaN NaN NaN 26.897 1 26.897 26.397 27.397 0 0 0 0 0.39996 1 3917 3917 7.9102 0.62092 1 + 10564 32721 6535 6541 13123 13123 0.022951425686983384 GLICRHRLDK 10 Unmodified _GLICRHRLDK_ 0 0 0 ENST00000487873.1_1_6:30618866-30620506:+|nuORF;ENST00000488383.5_1_6:30618866-30620689:+|nuORF;nc|nan|Q5SQH8-2|C6orf136;nc|nan|Q5SQH8-3|C6orf136;nc|nan|Q5SQH8|C6orf136;ENSG00000204564|ENST00000651131|C6orf136 ENST00000487873.1_1_6:30618866-30620506:+|nuORF ENST00000487873.1_1_6:30618866-30620506:+|nuORF MSMS UPN48_class_I_Rep_2 6 404.2675476074219 3 404.232758 1209.67644 NaN NaN NaN NaN NaN NaN NaN 75.366 1 78.956 78.456 79.456 3.59 0 0 0 0.53105 1 17771 17771 1.5923 0 1 10565 5529 6536 6542 13124 13124 0.07999363259341408 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN47_class_I_Rep_1 2 500.7870788574219 2 500.787307 999.560061 0.12474 6.2466E-05 0.43054 0.00021561 0.55527 0.00027807 500.7873960283251 53.926 1.1031 57.454 57.122 58.225 3.5278 120 58 3 0 0 0 0.04399 1 12181 12181 51.415 14.909 1 369020 10566 1535 6537 6543 13125 13125 0.060263232404167866 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN47_class_I_Rep_2 3 500.7873229980469 2 500.787307 999.560061 0.28735 0.0001439 0.15449 7.7368E-05 0.44184 0.00022127 500.78722588848905 54.123 0.83188 57.441 57.178 58.01 3.3187 104 44 3 0 0 0 0.0070648 2 12230 12184;12230 87.258 27.184 1 568800 10567 1535 6537 6543 13126;13127 13127 0.060263232404167866 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN47_class_I_Rep_3 4 500.7874755859375 2 500.787307 999.560061 0.24712 0.00012376 0.17579 8.8035E-05 0.42292 0.00021179 500.7872816142537 54.295 0.80074 57.481 57.234 58.034 3.1856 109 49 3 0 0 0 0.0055879 3 12307 12267;12307;12392 80.676 14.219 1 244590 10568 1535 6537 6543 13128;13129;13130 13129 0.060263232404167866 GLIDRQVTV 9 Unmodified _GLIDRQVTV_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MULTI-MSMS UPN46_class_I_Rep_3 1 500.7934265136719 2 500.792924 999.571294 0.24951 0.00012495 0.075077 3.7598E-05 0.32458 0.00016255 500.7929211969933 51.365 0.49758 51.365 51.162 51.659 0 94 54 2 0 0 0 0.048729 2 10927 10890;10927 49.527 19.687 1 343800 10569 2569 6538 6544 13131;13132 13132 0.07149145334574314 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_1 2 514.8029174804688 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 53.759 1 57.286 56.786 57.786 3.5278 0 0 0 0.075414 1 12071 12071 29.841 0 1 10570 2682 6539 6545 13133 13133 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_1 2 514.8036499023438 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 53.904 1 57.432 56.932 57.932 3.5278 0 0 0 0.15288 1 12116 12116 19.362 0 1 10571 2682 6539 6545 13134 13134 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_1 2 514.8029174804688 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 54.063 1 57.591 57.091 58.091 3.5278 0 0 0 0.29913 1 12165 12165 10.8 0 1 10572 2682 6539 6545 13135 13135 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_2 3 514.8030395507812 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 54.034 1 57.353 56.853 57.853 3.3187 0 0 0 0.15288 1 12183 12183 19.362 0 1 10573 2682 6539 6545 13136 13136 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_2 3 514.8029174804688 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 54.191 1 57.51 57.01 58.01 3.3187 0 0 0 0.10427 1 12231 12231 23.79 0 1 10574 2682 6539 6545 13137 13137 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_3 4 514.8027954101562 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 54.223 1 57.409 56.909 57.909 3.1856 0 0 0 0.087549 1 12295 12295 27.223 3.4335 1 10575 2682 6539 6545 13138 13138 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN47_class_I_Rep_3 4 514.802734375 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 54.359 1 57.544 57.044 58.044 3.1856 0 0 0 0.075414 1 12337 12337 29.841 0 1 10576 2682 6539 6545 13139 13139 0.0786689627452688 GLIENTYQL 9 Unmodified _GLIENTYQL_ 0 0 0 nc|ENSG00000145428|Q8N4F7-2|RNF175;ENST00000503694.5_1_4:154636517-154669813:-|nuORF;ENSG00000145428|ENST00000347063|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 MULTI-MSMS UPN47_class_I_Rep_1 2 525.7767944335938 2 525.776939 1049.53933 0.306 0.00016089 0.017245 9.0669E-06 0.32324 0.00016995 525.7769443691409 64.316 0.44183 67.672 67.408 67.85 3.3557 77 45 2 0 0 0 0.015319 1 15301 15301 66.457 12.624 1 135940 10577 3396 6540 6546 13140 13140 0.016537328607682866 GLIENTYQL 9 Unmodified _GLIENTYQL_ 0 0 0 nc|ENSG00000145428|Q8N4F7-2|RNF175;ENST00000503694.5_1_4:154636517-154669813:-|nuORF;ENSG00000145428|ENST00000347063|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 MULTI-MSMS UPN47_class_I_Rep_2 3 525.777587890625 2 525.776939 1049.53933 0.051938 2.7308E-05 0.23494 0.00012353 0.28688 0.00015083 525.7771542196206 64.572 0.50387 67.828 67.594 68.098 3.2556 69 38 2 0 0 0 0.066364 4 15376 15376;15414;15433;15449 41.956 9.094 1 130270 10578 3396 6540 6546 13141;13142;13143;13144 13141 0.016537328607682866 GLIENTYQL 9 Unmodified _GLIENTYQL_ 0 0 0 nc|ENSG00000145428|Q8N4F7-2|RNF175;ENST00000503694.5_1_4:154636517-154669813:-|nuORF;ENSG00000145428|ENST00000347063|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7777099609375 2 525.776939 1049.53933 0.34051 0.00017903 -0.064638 -3.3985E-05 0.27587 0.00014505 525.7769554471749 64.55 0.598 67.724 67.512 68.11 3.1741 76 46 2 0 0 0 0.0070866 5 15450 15405;15418;15450;15465;15490 71.922 19.654 1 151650 10579 3396 6540 6546 13145;13146;13147;13148;13149 13147 0.016537328607682866 GLIKKSFHHK 10 Unmodified _GLIKKSFHHK_ 0 0 0 REV__ENST00000586267.1_1_17:42883181-42884821:-|nuORF REV__ENST00000586267.1_1_17:42883181-42884821:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 597.8570556640625 2 597.858932 1193.70331 0.57562 0.00034414 -3.9788 -0.0023788 -3.4032 -0.0020346 597.8568168627779 90.72 0.037842 90.72 90.695 90.733 0 6 3 2 0 0 0 0.56354 1 21881 21881 1.3295 0.25807 1 93320 + 10580 23145 6541 6547 13150 13150 0.11420795142180395 GLIKKSFHHK 10 Unmodified _GLIKKSFHHK_ 0 0 0 REV__ENST00000586267.1_1_17:42883181-42884821:-|nuORF REV__ENST00000586267.1_1_17:42883181-42884821:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 597.858932 1193.70331 0.57562 0.00034414 -3.9788 -0.0023788 -3.4032 -0.0020346 597.8568168627779 90.72 0.037842 90.72 90.695 90.733 0 0 0 NaN 1.3295 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 93320 + 10581 23145 6541 6547 0.11420795142180395 GLIKPKCVC 9 Unmodified _GLIKPKCVC_ 0 0 0 Tigger3_dup288|chr4:109500959-109501401:+|1.488928907269896|0.0655101437995967|4.51|151.0|1|1|sense Tigger3_dup288|chr4:109500959-109501401:+|1.488928907269896|0.0655101437995967|4.51|151.0|1|1|sense Tigger3_dup288|chr4:109500959-109501401:+|1.488928907269896|0.0655101437995967|4.51|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 480.51904296875 2 480.772091 959.529629 NaN NaN NaN NaN NaN NaN NaN 25.131 1 28.768 28.268 29.268 3.6363 0 0 0 0.40038 1 3017 3017 0.6015 0 1 10582 33350 6542 6548 13151 13151 0.04824550050034304 GLIPLLGIDVW 11 Unmodified _GLIPLLGIDVW_ 0 0 0 ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2 ENST00000541573.5_1_6:160103527-160113001:-|nuORF ENST00000541573.5_1_6:160103527-160113001:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 598.3583984375 2 598.357899 1194.70125 0.30645 0.00018337 0.059871 3.5825E-05 0.36632 0.00021919 598.3579233069779 52.071 0.39419 55.63 55.294 55.689 3.5585 47 26 2 0 0 0 0.65271 1 11575 11575 2.9952 1.151 1 114260 10583 7327 6543 6549 13152 13152 0.11168321613718035 GLISFVSRLIF 11 Unmodified _GLISFVSRLIF_ 0 0 0 L1MA4A_dup863|chr2:185937993-185940470:-|1.395684646936576|0.1340637708733468|3.38|151.0|113|1|anti-sense L1MA4A_dup863|chr2:185937993-185940470:-|1.395684646936576|0.1340637708733468|3.38|151.0|113|1|anti-sense L1MA4A_dup863|chr2:185937993-185940470:-|1.395684646936576|0.1340637708733468|3.38|151.0|113|1|anti-sense MSMS UPN48_class_I_Rep_2 6 417.9220886230469 3 417.920174 1250.73869 NaN NaN NaN NaN NaN NaN NaN 98.024 1 101.8 101.3 102.3 3.779 0 0 0 0.38417 1 23285 23285 6.6235 0 1 10584 9860 6544 6550 13153 13153 0.12335412879338037 GLKALQKRPS 10 Unmodified _GLKALQKRPS_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MULTI-MSMS UPN47_class_I_Rep_2 3 549.3434448242188 2 549.343115 1096.67168 0.61776 0.00033936 -0.15782 -8.6699E-05 0.45994 0.00025266 549.3428455706813 107.85 0.136 111.39 111.34 111.48 3.5345 39 14 4 0 0 0 0.4965 2 26105 26105;26107 12.241 1.4167 1 22743000 + 10585 18292 6545 6551 13154;13155 13154 0.1272080238820763 GLKALQKRPS 10 Unmodified _GLKALQKRPS_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MULTI-MSMS UPN47_class_I_Rep_3 4 549.343505859375 2 549.343115 1096.67168 0.49688 0.00027296 0.2272 0.00012481 0.72408 0.00039777 549.3430620421321 107.86 0.13373 111.4 111.33 111.46 3.5382 32 13 4 0 0 0 0.4965 1 26338 26338 12.241 1.4167 1 27366000 + 10586 18292 6545 6551 13156 13156 0.1272080238820763 GLKALQKRPS 10 Unmodified _GLKALQKRPS_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MULTI-MSMS UPN48_class_I_Rep_3 7 549.3429565429688 2 549.343115 1096.67168 0.42677 0.00023444 0.026403 1.4504E-05 0.45318 0.00024895 549.342945840023 107.83 0.21353 111.51 111.44 111.66 3.6813 42 21 4 0 0 0 0.4965 1 25446 25446 12.241 0 1 39372000 + 10587 18292 6545 6551 13157 13157 0.1272080238820763 GLKDTYLH 8 Unmodified _GLKDTYLH_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|47|1|sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|47|1|sense MSMS UPN46_class_I_Rep_3 1 473.7535400390625 2 473.753267 945.491981 NaN NaN NaN NaN NaN NaN NaN 43.578 1 43.578 43.078 44.078 0 0 0 0 0.39996 1 8712 8712 7.9102 0 1 + 10588 30312 6546 6552 13158 13158 0.017054983804086987 GLKEGIPAL 9 Unmodified _GLKEGIPAL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN47_class_I_Rep_1 2 449.2734069824219 2 449.273835 896.533118 -0.075884 -3.4093E-05 -0.63985 -0.00028747 -0.71573 -0.00032156 449.27341351533715 50.335 0.89465 53.964 53.59 54.485 3.6285 91 43 3 0 0 0 0.14216 1 11040 11040 26.268 3.5319 1 186140 10589 4320 6547 6553 13159 13159 0.08071259419898524 GLKEGIPAL 9 Unmodified _GLKEGIPAL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN47_class_I_Rep_2 3 449.27325439453125 2 449.273835 896.533118 -0.14542 -6.5334E-05 -0.71072 -0.00031931 -0.85614 -0.00038464 449.2733523981796 50.686 0.88048 54.025 53.637 54.518 3.3386 94 45 3 0 0 0 0.10568 1 11148 11148 32.786 3.7041 1 176640 10590 4320 6547 6553 13160 13160 0.08071259419898524 GLKEGIPAL 9 Unmodified _GLKEGIPAL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 449.273835 896.533118 -0.16649 -7.4799E-05 -0.77194 -0.00034681 -0.93842 -0.00042161 449.27336175806965 50.922 0.9165 54.138 53.656 54.573 3.2163 0.095704 -5.1229E-05 NaN 32.786 93 47 3 NaN NaN NaN NaN 0 NaN NaN 0 235490 10591 4320 6547 6553 0.08071259419898524 GLKEHVKSHK 10 Unmodified _GLKEHVKSHK_ 0 0 0 ENSG00000175352|ENST00000309166|NRIP3 ENSG00000175352|ENST00000309166|NRIP3 ENSG00000175352|ENST00000309166|NRIP3 MSMS UPN47_class_I_Rep_3 4 581.8385009765625 2 581.838197 1161.66184 NaN NaN NaN NaN NaN NaN NaN 109.03 1 112.57 112.07 113.07 3.5382 0 0 0 0.53105 1 26761 26761 5.7319 0.83484 1 10592 4720 6548 6554 13161 13161 0.0874761438283258 GLKGAWCF 8 Unmodified _GLKGAWCF_ 0 0 0 ENSG00000262165|ENST00000635921|C17orf114 ENSG00000262165|ENST00000635921|C17orf114 ENSG00000262165|ENST00000635921|C17orf114 MSMS UPN47_class_I_Rep_1 2 441.2215881347656 2 441.220549 880.426544 NaN NaN NaN NaN NaN NaN NaN 23.491 1 27.196 26.696 27.696 3.7042 0 0 0 0.38221 1 2912 2912 14.582 0 1 10593 5788 6549 6555 13162 13162 -0.018451943462764575 GLKKKKKKKK 10 Unmodified _GLKKKKKKKK_ 0 0 0 AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|9|2|sense;AluSg_dup15121|chr7:128655513-128655817:+|3.305765374298272|0.4587638308191766|2.85|151.0|8|2|sense;AluSq2_dup54614|chr19:1589058-1589371:+|1.0762494540455585|0.3092428470924084|1.8|151.0|12|3|sense AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|9|2|sense AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.73 1 25.376 24.876 25.876 3.6459 0 0 0 0.53105 1 2105 2105 0.15932 0 1 10594 94 6550 6556 13163 13163 0.2778736654954628 GLKMKRTR 8 Unmodified _GLKMKRTR_ 0 0 0 REV__ENST00000217407.2_1_20:37005307-37005535:+|nuORF REV__ENST00000217407.2_1_20:37005307-37005535:+|nuORF MSMS UPN47_class_I_Rep_2 3 495.7887878417969 2 495.305478 988.596404 NaN NaN NaN NaN NaN NaN NaN 34.718 1 38.143 37.643 38.643 3.4253 0 0 0 0.40746 1 6315 6315 0.69038 0 1 + 10595 21477 6551 6557 13164 13164 0.10164921656155457 GLKPIKLLSPT 11 Unmodified _GLKPIKLLSPT_ 0 0 0 REV__AluSc_dup28084|chr16:2635321-2635621:-|1.480825283535807|0.2581219562092149|2.52|151.0|7|3|sense REV__AluSc_dup28084|chr16:2635321-2635621:-|1.480825283535807|0.2581219562092149|2.52|151.0|7|3|sense MSMS UPN46_class_I_Rep_3 1 583.8786010742188 2 583.878999 1165.74344 NaN NaN NaN NaN NaN NaN NaN 46.152 1 46.152 45.652 46.652 0 0 0 0 0.38417 1 9441 9441 2.7352 0.23671 1 + 10596 17081 6552 6558 13165 13165 0.16720297022084196 GLKRQKPTPKQ 11 Unmodified _GLKRQKPTPKQ_ 0 0 0 ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF ENSG00000182307|ENST00000331434|C8orf33 ENSG00000182307|ENST00000331434|C8orf33 MSMS UPN47_class_I_Rep_3 4 640.8945922851562 2 640.893503 1279.77245 NaN NaN NaN NaN NaN NaN NaN 51.557 1 54.773 54.273 55.273 3.2163 0 0 0 0.38417 1 11484 11484 0.96228 0.43751 1 10597 4946 6553 6559 13166 13166 0.14375834371071505 GLKVREYEL 9 Unmodified _GLKVREYEL_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS UPN47_class_I_Rep_1 2 553.8135986328125 2 553.813856 1105.61316 -0.0017723 -9.8155E-07 -0.019478 -1.0787E-05 -0.021251 -1.1769E-05 553.813728737301 39.995 1.3541 43.662 43.186 44.54 3.6668 237 104 3 0 0 0 0.022868 9 7906 7767;7818;7859;7899;7906;7945;7983;8062;8102 61.602 30.334 1 758870 10598 3260 6554 6560 13167;13168;13169;13170;13171;13172;13173;13174;13175 13171 0.06457701023077789 GLKVREYEL 9 Unmodified _GLKVREYEL_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MSMS UPN47_class_I_Rep_1 2 554.17626953125 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 40.949 1 44.621 44.121 45.121 3.6719 0 0 0 0.39036 1 8173 8173 2.9952 0.49676 1 10599 3260 6554 6560 13176 13176 0.06457701023077789 GLKVREYEL 9 Unmodified _GLKVREYEL_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MSMS UPN47_class_I_Rep_1 2 553.813720703125 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 41.105 1 44.777 44.277 45.277 3.6719 0 0 0 0.39036 1 8219 8219 2.9952 0.41776 1 10600 3260 6554 6560 13177 13177 0.06457701023077789 GLKVREYEL 9 Unmodified _GLKVREYEL_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS UPN47_class_I_Rep_2 3 553.8138427734375 2 553.813856 1105.61316 0.041504 2.2986E-05 0.043785 2.4249E-05 0.085289 4.7234E-05 553.8137706086502 40.395 1.3272 43.766 43.336 44.663 3.3712 215 103 3 0 0 0 0.079935 8 8016 7939;7978;8016;8060;8097;8136;8174;8208 38.615 14.825 1 587020 10601 3260 6554 6560 13178;13179;13180;13181;13182;13183;13184;13185 13180 0.06457701023077789 GLKVREYEL 9 Unmodified _GLKVREYEL_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS UPN47_class_I_Rep_3 4 553.8136596679688 2 553.813856 1105.61316 -0.0087071 -4.8221E-06 0.11824 6.5481E-05 0.10953 6.0659E-05 553.8137783107231 40.627 1.3306 43.864 43.37 44.7 3.2372 212 94 3 0 0 0 0.079935 8 8122 8081;8122;8160;8201;8245;8283;8307;8345 38.615 14.825 1 545550 10602 3260 6554 6560 13186;13187;13188;13189;13190;13191;13192;13193 13187 0.06457701023077789 GLKVREYEL 9 Unmodified _GLKVREYEL_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MSMS UPN47_class_I_Rep_3 4 553.8145141601562 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 41.812 1 45.049 44.549 45.549 3.2372 0 0 0 0.38073 1 8517 8517 5.2969 1.3525 1 10603 3260 6554 6560 13194 13194 0.06457701023077789 GLLDLPFRV 9 Unmodified _GLLDLPFRV_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS UPN46_class_I_Rep_3 1 515.3079223632812 2 515.30821 1028.60187 0.323 0.00016645 -1.0942 -0.00056385 -0.7712 -0.0003974 515.3076152539295 89.493 0.14757 89.493 89.385 89.533 0 14 13 2 0 0 0 0.19147 1 21541 21541 21.537 0 1 104340 10604 1579 6555 6561 13195 13195 0.08870923719587154 GLLDPRSLRL 10 Unmodified _GLLDPRSLRL_ 0 0 0 AluJo_dup42877|chr10:26504779-26505054:-|1.3126655692076774|0.0058628324895862|7.81|151.0|2|1|sense AluJo_dup42877|chr10:26504779-26505054:-|1.3126655692076774|0.0058628324895862|7.81|151.0|2|1|sense AluJo_dup42877|chr10:26504779-26505054:-|1.3126655692076774|0.0058628324895862|7.81|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 570.3309326171875 2 570.348397 1138.68224 NaN NaN NaN NaN NaN NaN NaN 49.323 1 52.557 52.057 53.057 3.2345 0 0 0 0.53105 1 10801 10801 6.2058 1.8765 1 10605 109 6556 6562 13196 13196 0.11844785042649164 GLLEGVRGV 9 Unmodified _GLLEGVRGV_ 0 0 0 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 MSMS UPN46_class_I_Rep_3 1 450.26953125 2 450.269084 898.523616 NaN NaN NaN NaN NaN NaN NaN 55.9 1 55.9 55.4 56.4 0 0 0 0 0.13613 1 12168 12168 20.415 3.3016 1 10606 3952 6557 6563 13197 13197 0.07029491134380805 GLLFLLLRPC 10 Unmodified _GLLFLLLRPC_ 0 0 0 HERVIP10F-int_dup99|chr6:87479191-87480702:-|1.5647381387946897|0.0520528939667114|4.91|151.0|88|2|anti-sense HERVIP10F-int_dup99|chr6:87479191-87480702:-|1.5647381387946897|0.0520528939667114|4.91|151.0|88|2|anti-sense HERVIP10F-int_dup99|chr6:87479191-87480702:-|1.5647381387946897|0.0520528939667114|4.91|151.0|88|2|anti-sense MSMS UPN46_class_I_Rep_3 1 572.8494262695312 2 572.849187 1143.68382 NaN NaN NaN NaN NaN NaN NaN 16.627 1 16.627 16.127 17.127 0 0 0 0 0.53105 1 1175 1175 0 0 1 10607 8213 6558 6564 13198 13198 0.11772702807093083 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN47_class_I_Rep_1 2 436.24755859375 2 436.247818 870.481082 0.019272 8.4073E-06 -0.29572 -0.00012901 -0.27645 -0.0001206 436.2475075537805 63.946 0.48136 67.302 67.087 67.569 3.3557 55 38 2 0 0 0 0.097406 1 15166 15166 34.402 0.29928 1 110310 10608 3874 6559 6565 13199 13199 0.04066096006135922 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN47_class_I_Rep_2 3 436.24737548828125 2 436.247818 870.481082 -0.39507 -0.00017235 0.019316 8.4267E-06 -0.37575 -0.00016392 436.2477411131954 64.315 0.55547 67.57 67.239 67.795 3.2556 78 42 2 0 0 0 0.025281 2 15296 15256;15296 60.074 11.728 1 138250 10609 3874 6559 6565 13200;13201 13201 0.04066096006135922 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN47_class_I_Rep_3 4 436.2475280761719 2 436.247818 870.481082 -0.40454 -0.00017648 0.063634 2.776E-05 -0.34091 -0.00014872 436.24774320219245 64.277 0.63894 67.451 67.141 67.78 3.1741 63 44 2 0 0 0 0.043452 2 15372 15328;15372 51.63 7.5181 1 137540 10610 3874 6559 6565 13202;13203 13203 0.04066096006135922 GLLGNVVNI 9 Unmodified _GLLGNVVNI_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN47_class_I_Rep_1 2 449.7711181640625 2 449.77146 897.528367 0.069732 3.1363E-05 -0.34558 -0.00015543 -0.27585 -0.00012407 449.77126460063994 75.942 0.29694 79.346 79.086 79.383 3.4034 62 28 3 0 0 0 0.0055465 2 18773 18735;18773 78.149 33.742 1 190770 10611 2833 6560 6566 13204;13205 13205 0.07550375277128296 GLLGNVVNI 9 Unmodified _GLLGNVVNI_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN47_class_I_Rep_1 2 449.77105712890625 2 449.77146 897.528367 0.071042 3.1952E-05 -0.38548 -0.00017338 -0.31443 -0.00014142 449.77129126456134 76.08 0.46587 79.483 79.363 79.829 3.4034 70 41 2 0 0 0 0.061943 1 18823 18823 43.858 7.8141 1 127540 10612 2833 6560 6566 13206 13206 0.07550375277128296 GLLGNVVNI 9 Unmodified _GLLGNVVNI_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN47_class_I_Rep_2 3 449.77099609375 2 449.77146 897.528367 -0.14437 -6.4933E-05 -0.25871 -0.00011636 -0.40308 -0.0001813 449.77134652132935 76.089 0.45171 79.411 79.15 79.601 3.3216 77 46 2 0 0 0 0.0081951 1 18825 18825 71.134 24.213 1 199320 10613 2833 6560 6566 13207 13207 0.07550375277128296 GLLGNVVNI 9 Unmodified _GLLGNVVNI_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MSMS UPN47_class_I_Rep_2 3 449.77142333984375 2 449.77146 897.528367 NaN NaN NaN NaN NaN NaN NaN 76.275 1 79.596 79.096 80.096 3.3216 0 0 0 0.046744 1 18875 18875 37.974 7.7492 1 10614 2833 6560 6566 13208 13208 0.07550375277128296 GLLGNVVNI 9 Unmodified _GLLGNVVNI_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN47_class_I_Rep_3 4 449.7712707519531 2 449.77146 897.528367 -0.22804 -0.00010257 0.072851 3.2766E-05 -0.15519 -6.98E-05 449.7714571670225 76.137 0.75253 79.394 79.137 79.889 3.2573 121 73 2 0 0 0 0.041849 2 18948 18891;18948 52.268 16.224 1 150740 10615 2833 6560 6566 13209;13210 13210 0.07550375277128296 GLLGNVVNI 9 Unmodified _GLLGNVVNI_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 449.77146 897.528367 -0.14015 -6.3036E-05 -1.0659 -0.00047941 -1.206 -0.00054244 449.77119459155284 76.429 0.19705 79.75 79.646 79.843 3.3216 0.13372 -0.00052862 NaN 43.858 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 45222 10616 2833 6560 6566 0.07550375277128296 GLLGQVVTPV 10 Unmodified _GLLGQVVTPV_ 0 0 0 LTR13A_dup185|chr22:45169406-45170372:+|2.0130296882978587|0.3222279426108818|2.64|151.0|14|2|sense LTR13A_dup185|chr22:45169406-45170372:+|2.0130296882978587|0.3222279426108818|2.64|151.0|14|2|sense LTR13A_dup185|chr22:45169406-45170372:+|2.0130296882978587|0.3222279426108818|2.64|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 491.7989807128906 2 491.800217 981.585882 NaN NaN NaN NaN NaN NaN NaN 67.977 1 71.485 70.985 71.985 3.5077 0 0 0 0.53105 1 15558 15558 2.7352 0.89096 1 10617 15569 6561 6567 13211 13211 0.09435217482712233 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MSMS UPN46_class_I_Rep_3 1 457.2892761230469 2 457.289485 912.564418 NaN NaN NaN NaN NaN NaN NaN 94.718 1 94.718 94.218 95.218 0 0 0 0 0.064572 1 22979 22979 32.786 3.7041 1 10618 4348 6562 6568 13212 13212 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_1 2 457.2894287109375 2 457.289485 912.564418 0.16036 7.3332E-05 -0.10517 -4.8095E-05 0.055189 2.5237E-05 457.28935868689126 88.256 0.85846 91.912 91.518 92.377 3.6563 196 103 2 0 0 0 0.0051925 6 22124 21995;22028;22061;22092;22124;22159 126.57 24.625 1 3663700 10619 4348 6562 6568 13213;13214;13215;13216;13217;13218 13217 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_2 3 457.28936767578125 2 457.289485 912.564418 0.056564 2.5866E-05 0.041685 1.9062E-05 0.098249 4.4928E-05 457.28938898193377 88.335 0.96613 91.782 91.418 92.384 3.4471 289 128 3 0 0 0 0.00033249 6 22027 21907;21941;21973;22000;22027;22055 166.45 30.114 1 716360 10620 4348 6562 6568 13219;13220;13221;13222;13223;13224 13223 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_3 4 457.2894287109375 2 457.289485 912.564418 -0.11585 -5.2976E-05 0.32929 0.00015058 0.21345 9.7607E-05 457.2895083235085 88.4 0.31651 91.787 91.561 91.877 3.3873 78 37 3 0 0 0 0.0064161 2 22179 22149;22179 126.57 26.767 1 516430 10621 4348 6562 6568 13225;13226 13226 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_3 4 457.28948974609375 2 457.289485 912.564418 -0.11552 -5.2825E-05 0.065571 2.9985E-05 -0.049947 -2.284E-05 457.28958068184403 88.579 0.27593 91.972 91.867 92.143 3.3931 70 34 3 0 0 0 0.014636 2 22243 22212;22243 139.14 27.851 1 9956800 10622 4348 6562 6568 13227;13228 13228 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_3 4 457.2895202636719 2 457.289485 912.564418 -0.11511 -5.264E-05 0.21761 9.9513E-05 0.1025 4.6873E-05 457.28949298186524 88.805 0.30757 92.198 92.143 92.451 3.3931 69 38 3 0 0 0 0.0013614 1 22275 22275 152.41 28.962 1 319860 10623 4348 6562 6568 13229 13229 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MSMS UPN47_class_I_Rep_3 4 457.2894592285156 2 457.289485 912.564418 NaN NaN NaN NaN NaN NaN NaN 88.955 1 92.348 91.848 92.848 3.3931 0 0 0 0.050874 1 22311 22311 36.506 2.1045 1 10624 4348 6562 6568 13230 13230 0.10463832454001931 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 457.289485 912.564418 0.17066 7.8039E-05 0.027035 1.2363E-05 0.19769 9.0402E-05 457.28936644042574 88.811 0.19099 92.549 92.439 92.63 3.7379 0.17547 -0.00012095 NaN 152.41 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 134680 10625 4348 6562 6568 0.10463832454001931 GLLIHTGRA 9 Unmodified _GLLIHTGRA_ 0 0 0 ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 469.2829895019531 2 469.282526 936.550499 0.07549 3.5426E-05 0.53771 0.00025234 0.6132 0.00028776 469.28282750928184 107.55 0.13574 111.18 111.13 111.27 3.6313 24 16 3 0 0 0 0.30034 1 25927 25927 13.906 1.3745 1 2376900 10626 7721 6563 6569 13231 13231 0.07968599745549909 GLLIHTGRA 9 Unmodified _GLLIHTGRA_ 0 0 0 ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 469.28179931640625 2 469.282526 936.550499 0.20424 9.5845E-05 -0.2122 -9.9583E-05 -0.0079646 -3.7377E-06 469.2821629485803 107.57 0.079567 111.25 111.23 111.3 3.6783 18 11 2 0 0 0 0.36392 1 25432 25432 10.074 1.4806 1 2227200 10627 7721 6563 6569 13232 13232 0.07968599745549909 GLLIHTGRA 9 Unmodified _GLLIHTGRA_ 0 0 0 ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 469.282526 936.550499 0.20424 9.5845E-05 -0.2122 -9.9583E-05 -0.0079646 -3.7377E-06 469.2821629485803 107.57 0.079567 111.25 111.23 111.3 3.6783 0.046586 0.00019763 NaN 13.906 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2227200 10628 7721 6563 6569 0.07968599745549909 GLLIHTGRA 9 Unmodified _GLLIHTGRA_ 0 0 0 ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|47|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 469.282526 936.550499 0.20118 9.4408E-05 -0.3437 -0.00016129 -0.14253 -6.6886E-05 469.2822531005154 107.58 0.08606 111.27 111.22 111.3 3.6813 0.058619 7.4209E-05 NaN 13.906 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2532100 10629 7721 6563 6569 0.07968599745549909 GLLRVCRALL 10 Unmodified _GLLRVCRALL_ 0 0 0 ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1 ENST00000316846.2_11:65545618-65547282:-|nuORF ENST00000316846.2_11:65545618-65547282:-|nuORF MSMS UPN48_class_I_Rep_1 5 557.3504638671875 2 557.349886 1112.68522 NaN NaN NaN NaN NaN NaN NaN 77.554 1 81.076 80.576 81.576 3.5221 0 0 0 0.53105 1 18462 18462 1.4819 0 1 10630 5754 6564 6570 13233 13233 0.13338336895822067 GLLSAKKLQ 9 Unmodified _GLLSAKKLQ_ 0 0 0 ENST00000393633.6_1_7:75039867-75040032:+|nuORF;ENST00000430211.1_7:75039430-75040029:+|nuORF;ENST00000485741.6_1_7:72424205-72425256:-|nuORF;ENST00000473960.1_1_7:75039650-75040029:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF ENST00000393633.6_1_7:75039867-75040032:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 479.30792236328125 2 479.30821 956.601866 -0.78539 -0.00037644 0.33018 0.00015826 -0.45521 -0.00021819 479.3082351811051 14.669 0.25033 18.039 17.929 18.179 3.3697 51 29 2 0 0 0 0.48643 1 597 597 2.0598 0 1 46164 10631 6537 6565 6571 13234 13234 0.12182923719615246 GLLTLKNEL 9 Unmodified _GLLTLKNEL_ 0 0 0 REV__ENSG00000145246|ENST00000273859|ATP10D REV__ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS UPN47_class_I_Rep_1 2 500.7874450683594 2 500.8055 999.596446 0.12634 6.327E-05 -0.24531 -0.00012285 -0.11898 -5.9583E-05 500.8052688503073 54.237 0.6973 57.739 57.273 57.97 3.5014 62 34 2 0 0 0 0.25207 2 12099 12099;12137 16.942 3.4344 1 85683 + 10632 19510 6566 6572 13235;13236 13235 0.09663200137140393 GLLVHGLNSL 10 Unmodified _GLLVHGLNSL_ 0 0 0 REV__ENSG00000072858|ENST00000264852|SIDT1 REV__ENSG00000072858|ENST00000264852|SIDT1 MULTI-MSMS UPN47_class_I_Rep_2 3 511.8033752441406 2 511.803291 1021.59203 -0.27669 -0.00014161 -0.051391 -2.6302E-05 -0.32809 -0.00016792 511.8031567422144 40.159 0.59837 43.53 43.298 43.897 3.3712 51 37 2 0 0 0 0.56118 1 7954 7954 2.9952 0 1 61475 + 10633 17835 6567 6573 13237 13237 0.08209735714228827 GLLVPRRRR 9 Unmodified _GLLVPRRRR_ 0 0 0 AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 561.8699340820312 2 561.870166 1121.72578 0.4443 0.00024964 0.0055946 3.1434E-06 0.4499 0.00025278 561.8701101763797 108.06 0.30228 111.69 111.59 111.89 3.6313 35 26 2 0 0 0 0.48643 1 26166 26166 2.0598 0 1 1505200 10634 85 6568 6574 13238 13238 0.1697843933045533 GLLVPRRRR 9 Unmodified _GLLVPRRRR_ 0 0 0 AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.87060546875 2 561.870166 1121.72578 0.49313 0.00027707 0.20479 0.00011506 0.69791 0.00039214 561.8703109977839 108.21 0.36975 111.88 111.72 112.09 3.6746 62 41 2 0 0 0 0.48643 2 25590 25590;25634 2.0598 0 1 3444500 10635 85 6568 6574 13239;13240 13239 0.1697843933045533 GLLVPRRRR 9 Unmodified _GLLVPRRRR_ 0 0 0 AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 561.870166 1121.72578 0.50738 0.00028508 -0.057344 -3.222E-05 0.45004 0.00025286 561.8701280511382 108.2 0.062584 111.83 111.78 111.85 3.6355 0.066542 -0.0002319 NaN 2.0598 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 916040 10636 85 6568 6574 0.1697843933045533 GLLVPRRRR 9 Unmodified _GLLVPRRRR_ 0 0 0 AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 561.870166 1121.72578 0.63473 0.00035663 0.50694 0.00028484 1.1417 0.00064147 561.8704251152802 108.05 0.046738 111.58 111.55 111.59 3.5333 -0.18555 0.00040222 NaN 2.0598 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 747710 10637 85 6568 6574 0.1697843933045533 GLLVPRRRR 9 Unmodified _GLLVPRRRR_ 0 0 0 AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense AluJb_dup9994|chr1:204534490-204534791:-|2.292015084793098|0.2747597384658893|3.06|151.0|6|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 561.870166 1121.72578 0.42546 0.00023906 0.042619 2.3946E-05 0.46808 0.000263 561.8702332978473 108.16 0.11739 111.85 111.76 111.88 3.6813 0.079891 -0.00011956 NaN 2.0598 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3177300 10638 85 6568 6574 0.1697843933045533 GLMNRLRKKT 10 Unmodified _GLMNRLRKKT_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-4|CDC20B REV__nc|ENSG00000164287|Q86Y33-4|CDC20B MSMS UPN48_class_I_Rep_2 6 406.2488098144531 3 406.248408 1215.72339 NaN NaN NaN NaN NaN NaN NaN 81.686 1 85.342 84.842 85.842 3.6567 0 0 0 0.53105 1 19395 19395 3.8763 1.97 1 + 10639 20048 6569 6575 13241 13241 0.1241622281047512 GLMNRLRKKTV 11 Unmodified _GLMNRLRKKTV_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-4|CDC20B REV__nc|ENSG00000164287|Q86Y33-4|CDC20B MULTI-MSMS UPN48_class_I_Rep_1 5 439.27130126953125 3 439.271213 1314.79181 -0.0039486 -1.7345E-06 0.4316 0.00018959 0.42765 0.00018786 439.2713397210006 38.514 0.84077 42.018 41.669 42.51 3.5048 103 69 2 0 0 0 0.67113 1 6658 6658 1.3296 0.55311 1 193640 + 10640 20048 6570 6576 13242 13242 0.14700467390321137 GLMNRLRKKTV 11 Unmodified _GLMNRLRKKTV_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-4|CDC20B REV__nc|ENSG00000164287|Q86Y33-4|CDC20B MULTI-MATCH UPN46_class_I_Rep_3 1 3 439.271213 1314.79181 0.14276 6.271E-05 0.50566 0.00022212 0.64842 0.00028483 439.27161192380066 42.194 0.10331 42.194 42.161 42.265 0 0.087555 9.1387E-05 NaN 1.3296 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 263810 + 10641 20048 6570 6576 0.14700467390321137 GLNDFIQKI 9 Unmodified _GLNDFIQKI_ 0 0 0 ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1 ENST00000474427.6_1_6:134495647-134495951:-|nuORF ENST00000474427.6_1_6:134495647-134495951:-|nuORF MSMS UPN46_class_I_Rep_3 1 524.3079833984375 2 524.295299 1046.57605 NaN NaN NaN NaN NaN NaN NaN 71.158 1 71.158 70.658 71.658 0 0 0 0 0.02789 1 16380 16380 47.732 3.8737 1 10642 2253 6571 6577 13243 13243 0.05462029477325814 GLNEFIQNL 9 Unmodified _GLNEFIQNL_ 0 0 0 ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron;nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3 ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 524.2769775390625 2 524.277106 1046.53966 0.36592 0.00019185 -0.30441 -0.00015959 0.061516 3.2252E-05 524.2768630902789 78.949 0.80936 82.244 81.972 82.781 3.295 170 74 3 0 0 0 0.013215 1 19751 19751 67.838 3.8776 1 395900 10643 1680 6572 6578 13244 13244 0.01825152580613576 GLNEFIQNL 9 Unmodified _GLNEFIQNL_ 0 0 0 ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron;nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3 ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron MULTI-MATCH UPN47_class_I_Rep_1 2 2 524.277106 1046.53966 0.3391 0.00017778 -0.38782 -0.00020332 -0.04872 -2.5543E-05 524.2768225328329 78.807 0.31857 82.252 82.145 82.464 3.4456 -0.0010065 -9.9292E-05 NaN 67.838 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 81070 10644 1680 6572 6578 0.01825152580613576 GLNEFIQNL 9 Unmodified _GLNEFIQNL_ 0 0 0 ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron;nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3 ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 524.277106 1046.53966 0.10741 5.6313E-05 -0.20216 -0.00010599 -0.094749 -4.9675E-05 524.2769351708794 78.908 0.56794 82.264 82.044 82.612 3.3554 0.010369 9.538E-05 NaN 67.838 76 54 2 NaN NaN NaN NaN 0 NaN NaN 0 107480 10645 1680 6572 6578 0.01825152580613576 GLNHWQMGPQT 11 Unmodified _GLNHWQMGPQT_ 0 0 0 REV__AluSz_dup22001|chr4:1731641-1731933:-|1.3051852597755706|0.0933956985211091|3.8|151.0|14|2|anti-sense REV__AluSz_dup22001|chr4:1731641-1731933:-|1.3051852597755706|0.0933956985211091|3.8|151.0|14|2|anti-sense MSMS UPN48_class_I_Rep_2 6 634.7982177734375 2 634.795672 1267.57679 NaN NaN NaN NaN NaN NaN NaN 45.796 1 49.554 49.054 50.054 3.7579 0 0 0 0.38417 1 8878 8878 1.1933 0.66858 1 + 10646 17199 6573 6579 13245 13245 -0.04629499145266891 GLPGLALGARG 11 Unmodified _GLPGLALGARG_ 0 0 0 REV__ENST00000492289.5_1_22:45073049-45126704:+|nuORF REV__ENST00000492289.5_1_22:45073049-45126704:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 491.2957458496094 2 491.295633 980.576714 0.26997 0.00013264 0.2112 0.00010376 0.48117 0.0002364 491.295267274705 107.64 0.094254 111.31 111.25 111.34 3.6724 26 12 3 0 0 0 22.551 1 26371 26371 8.1555 4.2111 1 955020 + 10647 22638 6574 6580 13246 13246 0.08564868917039803 GLPPEKKNA 9 Unmodified _GLPPEKKNA_ 0 0 0 ENSG00000243478.9,AOX2P,chr2,+,I12.1,200756657,200758958|54|11.19|4|intron ENSG00000243478.9,AOX2P,chr2,+,I12.1,200756657,200758958|54|11.19|4|intron ENSG00000243478.9,AOX2P,chr2,+,I12.1,200756657,200758958|54|11.19|4|intron MULTI-MSMS UPN47_class_I_Rep_2 3 477.2746887207031 2 477.274367 952.53418 0.095289 4.5479E-05 -0.22337 -0.00010661 -0.12808 -6.1129E-05 477.2741758888087 49.159 0.66709 52.505 52.189 52.856 3.3465 66 45 2 0 0 0 0.35081 1 10760 10760 10.824 0 1 144860 10648 5720 6575 6581 13247 13247 0.056014737887949195 GLPRLARFL 9 Unmodified _GLPRLARFL_ 0 0 0 nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 nc|ENSG00000074855|Q9HCE9-2|ANO8 MSMS UPN47_class_I_Rep_2 3 521.829345703125 2 521.829643 1041.64473 NaN NaN NaN NaN NaN NaN NaN 108.9 1 112.44 111.94 112.94 3.5333 0 0 0 0.35339 1 26483 26483 7.9102 0 1 10649 1136 6576 6582 13248 13248 0.12557738567693377 GLPVCDSLQSS 11 Unmodified _GLPVCDSLQSS_ 0 0 0 ENST00000443422.1_1_1:226844394-226844625:-|nuORF ENST00000443422.1_1_1:226844394-226844625:-|nuORF ENST00000443422.1_1_1:226844394-226844625:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.2640991210938 2 553.263339 1104.51212 -0.10012 -5.5395E-05 0.40243 0.00022265 0.3023 0.00016725 553.2637437482726 12.925 0.093967 16.375 16.334 16.428 3.45 12 6 3 0 0 0 0.67519 1 199 199 0.96228 0.16864 1 19106 10650 6780 6577 6583 13249 13249 -0.035951187419414055 GLQEGSDRKH 10 Unmodified _GLQEGSDRKH_ 0 0 0 REV__ENSG00000139517|ENST00000316334|LNX2 REV__ENSG00000139517|ENST00000316334|LNX2 MSMS UPN48_class_I_Rep_3 7 563.7833862304688 2 563.783619 1125.55268 NaN NaN NaN NaN NaN NaN NaN 19.283 1 22.905 22.405 23.405 3.6215 0 0 0 0.53105 1 1428 1428 5.7319 0 1 + 10651 19314 6578 6584 13250 13250 -0.005070163073014555 GLQEGTHEL 9 Unmodified _GLQEGTHEL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_1 2 492.2442626953125 2 492.243264 982.471974 -0.29502 -0.00014522 0.37198 0.00018311 0.076962 3.7884E-05 492.24344430378545 29.894 0.50577 33.639 33.403 33.909 3.7449 52 37 2 0 0 0 0.47197 2 4778 4778;4796 3.5965 0 1 56930 10652 4690 6579 6585 13251;13252 13251 -0.019962973501833403 GLQEGTHEL 9 Unmodified _GLQEGTHEL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_3 4 492.2430725097656 2 492.243264 982.471974 -0.41549 -0.00020452 0.2721 0.00013394 -0.14339 -7.0585E-05 492.2433309147003 30.349 0.46991 33.661 33.382 33.852 3.3116 49 36 2 0 0 0 0.42249 1 4953 4953 6.7232 0 1 62155 10653 4690 6579 6585 13253 13253 -0.019962973501833403 GLQLWKPRLP 10 Unmodified _GLQLWKPRLP_ 0 0 0 REV__L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|5|1|sense REV__L1PA5_dup972|chr2:63449342-63454110:+|1.9493549606586944|0.1498152620246111|3.7|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 604.3671264648438 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 97.657 1 101.14 100.64 101.64 3.4836 0 0 0 0.53105 1 23963 23963 1.6526 0.17072 1 + 10654 29828 6580 6586 13254 13254 0.12861965801971564 GLQQELAAL 9 Unmodified _GLQQELAAL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN47_class_I_Rep_1 2 471.7662353515625 2 471.766374 941.518196 NaN NaN NaN NaN NaN NaN NaN 69.714 1 73.082 72.582 73.582 3.3678 0 0 0 0.026535 1 16907 16907 49.554 11.379 1 10655 1487 6581 6587 13255 13255 0.04509767551905952 GLQQELAAL 9 Unmodified _GLQQELAAL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN47_class_I_Rep_1 2 471.7662048339844 2 471.766374 941.518196 NaN NaN NaN NaN NaN NaN NaN 69.843 1 73.211 72.711 73.711 3.3678 0 0 0 0.036539 1 16945 16945 41.956 10.687 1 10656 1487 6581 6587 13256 13256 0.04509767551905952 GLQQELAAL 9 Unmodified _GLQQELAAL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN47_class_I_Rep_1 2 471.76605224609375 2 471.766374 941.518196 NaN NaN NaN NaN NaN NaN NaN 69.961 1 73.332 72.832 73.832 3.3713 0 0 0 0.064572 1 16981 16981 32.786 10.049 1 10657 1487 6581 6587 13257 13257 0.04509767551905952 GLQQELAAL 9 Unmodified _GLQQELAAL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN47_class_I_Rep_2 3 471.76629638671875 2 471.766374 941.518196 0.045336 2.1388E-05 -0.11206 -5.2864E-05 -0.066719 -3.1476E-05 471.76617212428965 70.033 0.75844 73.309 72.956 73.715 3.2761 159 68 3 0 0 0 0.0068778 4 17045 17007;17045;17089;17130 85.642 31.809 1 430360 10658 1487 6581 6587 13258;13259;13260;13261 13259 0.04509767551905952 GLQQELAAL 9 Unmodified _GLQQELAAL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN47_class_I_Rep_3 4 471.7660217285156 2 471.766374 941.518196 -0.0031357 -1.4793E-06 -0.023043 -1.0871E-05 -0.026179 -1.235E-05 471.76621158987246 69.989 0.86725 73.194 72.912 73.779 3.2044 138 72 3 0 0 0 0.015319 5 17098 17060;17098;17134;17173;17210 66.457 28.281 1 442990 10659 1487 6581 6587 13262;13263;13264;13265;13266 13263 0.04509767551905952 GLRESIASY 9 Unmodified _GLRESIASY_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA;nc|ENSG00000155926|Q13239-4|SLA;ENST00000517549.1_1_8:134050771-134052457:-|nuORF ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN46_class_I_Rep_3 1 498.2610778808594 2 498.261456 994.50836 0.27755 0.00013829 -0.14499 -7.2243E-05 0.13256 6.6048E-05 498.26123455192845 45.522 0.43148 45.522 45.214 45.646 0 50 39 2 0 0 0 0.19147 1 9243 9243 21.537 2.28 1 203550 10660 3716 6582 6588 13267 13267 0.010885795465128467 GLRFHLVLKR 10 Unmodified _GLRFHLVLKR_ 0 0 0 L1MA4_dup9463|chr19:9665238-9665765:+|1.10374481299515|0.039907800182689|4.79|151.0|8|2|sense L1MA4_dup9463|chr19:9665238-9665765:+|1.10374481299515|0.039907800182689|4.79|151.0|8|2|sense L1MA4_dup9463|chr19:9665238-9665765:+|1.10374481299515|0.039907800182689|4.79|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 619.8951416015625 2 619.895849 1237.77715 NaN NaN NaN NaN NaN NaN NaN 80.232 1 80.232 79.732 80.732 0 0 0 0 0.53105 1 18890 18890 0.40072 0.050084 1 10661 9746 6583 6589 13268 13268 0.16776763304460474 GLRGDIISQF 10 Unmodified _GLRGDIISQF_ 0 0 0 REV__L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|167|3|anti-sense REV__L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|167|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.30322265625 2 553.303655 1104.59276 0.4145 0.00022934 -1.1938 -0.00066051 -0.77927 -0.00043117 553.3030104435954 58.112 0.7699 61.549 61.096 61.866 3.437 72 48 2 0 0 0 0.53004 1 13459 13459 8.1555 2.4237 1 114780 + 10662 29991 6584 6590 13269 13269 0.04464530363270569 GLRKMMPVK 9 Unmodified _GLRKMMPVK_ 0 0 0 REV__nc|ENSG00000197249|P01009-3|SERPINA1 REV__nc|ENSG00000197249|P01009-3|SERPINA1 MULTI-MSMS UPN47_class_I_Rep_3 4 530.3131713867188 2 530.311915 1058.60928 -0.11189 -5.9336E-05 1.2963 0.00068745 1.1844 0.00062812 530.3125531364417 38.868 1.1739 42.106 41.574 42.748 3.238 161 83 2 0 0 0 0.48846 1 7693 7693 1.8442 0.19162 1 136560 + 10663 21072 6585 6591 13270 13270 0.08231616724015112 GLRQDVLHWLN 11 Unmodified _GLRQDVLHWLN_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS UPN47_class_I_Rep_1 2 450.91387939453125 3 450.914083 1349.72042 -0.37696 -0.00016998 -0.193 -8.7026E-05 -0.56996 -0.000257 450.91396635229313 31.793 1.0771 35.522 35.173 36.25 3.7293 220 84 4 0 0 0 0.64031 1 5444 5444 4.1166 0.52395 1 453730 10664 1485 6586 6592 13271 13271 0.05954670957316921 GLRRGARRT 9 Unmodified _GLRRGARRT_ 0 0 0 REV__ENST00000454650.1_1_7:2281983-2282127:+|nuORF REV__ENST00000454650.1_1_7:2281983-2282127:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 521.822021484375 2 521.820673 1041.62679 0.40441 0.00021103 3.1273 0.0016319 3.5317 0.0018429 521.8220134059673 107.63 0.083679 111.31 111.28 111.36 3.6813 18 10 2 0 0 0 0.32682 1 25387 25387 12.241 0.60036 1 2259500 + 10665 22400 6587 6593 13272 13272 0.10764416365555007 GLSDLRLEL 9 Unmodified _GLSDLRLEL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN47_class_I_Rep_1 2 508.29315185546875 2 508.292756 1014.57096 0.18636 9.4723E-05 -0.076897 -3.9086E-05 0.10946 5.5637E-05 508.29269175702757 67.955 0.53535 71.319 71.011 71.546 3.3646 73 41 2 0 0 0 0.35123 1 16365 16365 10.8 1.4164 1 132130 10666 2717 6588 6594 13273 13273 0.06425725614690236 GLSDLRLEL 9 Unmodified _GLSDLRLEL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN47_class_I_Rep_2 3 508.29248046875 2 508.292756 1014.57096 0.098577 5.0106E-05 0.18337 9.3207E-05 0.28195 0.00014331 508.29273288937225 68.211 0.58591 71.481 71.192 71.777 3.2696 85 50 2 0 0 0 0.37318 2 16438 16438;16478 9.544 0.79857 1 200450 10667 2717 6588 6594 13274;13275 13274 0.06425725614690236 GLSDLRLEL 9 Unmodified _GLSDLRLEL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN47_class_I_Rep_3 4 508.292724609375 2 508.292756 1014.57096 0.25589 0.00013007 -0.085318 -4.3367E-05 0.17057 8.67E-05 508.2925791650873 68.231 0.57412 71.429 71.176 71.75 3.1977 56 37 2 0 0 0 0.10956 1 16554 16554 32.037 10.501 1 158490 10668 2717 6588 6594 13276 13276 0.06425725614690236 GLSHSGAWW 9 Unmodified _GLSHSGAWW_ 0 0 0 REV__ENST00000321599.8_2_3:49762771-49762981:-|nuORF REV__ENST00000321599.8_2_3:49762771-49762981:-|nuORF MSMS UPN46_class_I_Rep_3 1 500.73553466796875 2 500.735409 999.456264 NaN NaN NaN NaN NaN NaN NaN 103.07 1 103.07 102.57 103.57 0 0 0 0 0.38299 1 25153 25153 4.756 0.42677 1 + 10669 21740 6589 6595 13277 13277 -0.04348539076579527 GLSIHAETY 9 Unmodified _GLSIHAETY_ 0 0 0 REV__Tigger3b_dup3539|chr9:37229326-37230423:-|1.1476593071100831|0.0213656421462126|5.75|149.0|50|1|anti-sense REV__Tigger3b_dup3539|chr9:37229326-37230423:-|1.1476593071100831|0.0213656421462126|5.75|149.0|50|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.7486572265625 2 495.748182 989.481811 0.27868 0.00013815 -0.064613 -3.2032E-05 0.21406 0.00010612 495.7481505792594 44.729 0.65108 44.729 44.556 45.207 0 91 64 2 0 0 0 0.12799 2 9027 9027;9066 28.487 0 1 644050 + 10670 32746 6590 6596 13278;13279 13278 -0.01335109344825014 GLSIHINTV 9 Unmodified _GLSIHINTV_ 0 0 0 REV__Tigger3b_dup688|chr2:99820097-99820870:-|1.0930915497203266|0.1748518883807586|2.64|149.0|51|2|anti-sense REV__Tigger3b_dup688|chr2:99820097-99820870:-|1.0930915497203266|0.1748518883807586|2.64|149.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 477.27398681640625 2 477.274367 952.53418 -0.060432 -2.8843E-05 -0.13159 -6.2806E-05 -0.19203 -9.1649E-05 477.27430812345443 48.864 0.68838 52.524 52.092 52.78 3.6592 76 45 2 0 0 0 0.090251 2 10504 10504;10590 36.127 0 1 119210 + 10671 32768 6591 6597 13280;13281 13280 0.05601473788806288 GLSIHINTV 9 Unmodified _GLSIHINTV_ 0 0 0 REV__Tigger3b_dup688|chr2:99820097-99820870:-|1.0930915497203266|0.1748518883807586|2.64|149.0|51|2|anti-sense REV__Tigger3b_dup688|chr2:99820097-99820870:-|1.0930915497203266|0.1748518883807586|2.64|149.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 477.2741394042969 2 477.274367 952.53418 0.095289 4.5479E-05 -0.22337 -0.00010661 -0.12808 -6.1129E-05 477.2741758888087 49.159 0.66709 52.505 52.189 52.856 3.3465 66 45 2 0 0 0 0.31407 1 10715 10715 13.042 0 1 144860 + 10672 32768 6591 6597 13282 13282 0.05601473788806288 GLSIHINTV 9 Unmodified _GLSIHINTV_ 0 0 0 REV__Tigger3b_dup688|chr2:99820097-99820870:-|1.0930915497203266|0.1748518883807586|2.64|149.0|51|2|anti-sense REV__Tigger3b_dup688|chr2:99820097-99820870:-|1.0930915497203266|0.1748518883807586|2.64|149.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 477.27398681640625 2 477.274367 952.53418 0.057551 2.7468E-05 -0.22909 -0.00010934 -0.17154 -8.1871E-05 477.27429647356064 49.302 0.71438 52.536 52.191 52.905 3.2345 72 42 2 0 0 0 0.24936 1 10757 10757 17.113 0 1 123700 + 10673 32768 6591 6597 13283 13283 0.05601473788806288 GLSILDATL 9 Unmodified _GLSILDATL_ 0 0 0 REV__AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|18|1|anti-sense REV__AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 451.7637023925781 2 451.7633 901.512048 0.062293 2.8142E-05 0.022709 1.0259E-05 0.085002 3.8401E-05 451.7631393079465 46.574 0.50951 50.323 49.986 50.496 3.7494 41 32 2 0 0 0 0.35081 1 9085 9085 10.824 1.4408 1 90464 + 10674 16921 6592 6598 13284 13284 0.057352493203779886 GLSILDATL 9 Unmodified _GLSILDATL_ 0 0 0 REV__AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|18|1|anti-sense REV__AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|18|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 451.7633 901.512048 0.090599 4.0929E-05 -0.42202 -0.00019065 -0.33142 -0.00014972 451.7630854672599 46.76 0.46546 50.397 50.123 50.588 3.6363 0.059173 -0.00013675 NaN 10.824 35 29 2 NaN NaN NaN NaN 0 NaN NaN 0 58545 + 10675 16921 6592 6598 0.057352493203779886 GLSLRTGGLQ 10 Unmodified _GLSLRTGGLQ_ 0 0 0 REV__ENST00000475199.1_1_1:27679714-27680340:+|nuORF REV__ENST00000475199.1_1_1:27679714-27680340:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 501.2904052734375 2 501.290548 1000.56654 0.24572 0.00012318 -0.033402 -1.6744E-05 0.21232 0.00010643 501.290421191084 77.617 2.3009 80.949 79.635 81.936 3.3315 416 240 2 0 0 0 0.55148 1 19349 19349 5.2969 0.96765 1 487260 + 10676 19417 6593 6599 13285 13285 0.06628261191815454 GLTCLYTLYW 10 Unmodified _GLTCLYTLYW_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MSMS UPN47_class_I_Rep_1 2 616.8046875 2 616.804642 1231.59473 NaN NaN NaN NaN NaN NaN NaN 30.121 1 33.865 33.365 34.365 3.7449 0 0 0 0.53105 1 4881 4881 1.4819 0 1 10677 4524 6594 6600 13286 13286 -0.011801769431258435 GLTEALHFV 9 Unmodified _GLTEALHFV_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS UPN47_class_I_Rep_1 2 493.768798828125 2 493.768917 985.523281 0.14379 7.1E-05 -0.88472 -0.00043685 -0.74093 -0.00036585 493.7683223781811 64.105 0.56983 67.461 67.087 67.657 3.3557 61 48 2 0 0 0 0.11897 4 15167 15167;15217;15222;15231 30.225 5.5509 1 63479 10678 2517 6595 6601 13287;13288;13289;13290 13287 0.029940714145254788 GLTEALHFV 9 Unmodified _GLTEALHFV_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS UPN47_class_I_Rep_2 3 493.76983642578125 2 493.768917 985.523281 0.22794 0.00011255 -0.96418 -0.00047608 -0.73625 -0.00036354 493.7683778341413 64.319 0.47887 67.575 67.357 67.836 3.2556 53 36 2 0 0 0 0.090595 2 15326 15306;15326 36.044 17.909 1 97027 10679 2517 6595 6601 13291;13292 13292 0.029940714145254788 GLTEALHFV 9 Unmodified _GLTEALHFV_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MSMS UPN47_class_I_Rep_2 3 493.7686767578125 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 64.74 1 67.996 67.496 68.496 3.2556 0 0 0 0.35339 1 15445 15445 7.9102 2.6133 1 10680 2517 6595 6601 13293 13293 0.029940714145254788 GLTEALHFV 9 Unmodified _GLTEALHFV_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS UPN47_class_I_Rep_3 4 493.7685546875 2 493.768917 985.523281 0.20022 9.8865E-05 -0.68943 -0.00034042 -0.4892 -0.00024155 493.7685827225684 64.34 0.39972 67.514 67.314 67.714 3.1741 39 27 2 0 0 0 0.11897 4 15368 15354;15368;15407;15413 30.225 16.717 1 74989 10681 2517 6595 6601 13294;13295;13296;13297 13295 0.029940714145254788 GLTGVTIDALG 11 Unmodified _GLTGVTIDALG_ 0 0 0 REV__ENSG00000083457|ENST00000263087|ITGAE REV__ENSG00000083457|ENST00000263087|ITGAE MSMS UPN47_class_I_Rep_1 2 508.8030090332031 2 508.784764 1015.55498 NaN NaN NaN NaN NaN NaN NaN 30.519 1 34.264 33.764 34.764 3.7449 0 0 0 0.11455 1 5000 5000 21.537 1.1224 1 + 10682 17932 6596 6602 13298 13298 0.047820193778079556 GLTPAILLL 9 Unmodified _GLTPAILLL_ 0 0 0 L1MA3_dup416|chr1:184925069-184926226:-|1.8966139206901835|0.0188224143390585|6.65|151.0|52|1|anti-sense;L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|400|3|anti-sense L1MA3_dup416|chr1:184925069-184926226:-|1.8966139206901835|0.0188224143390585|6.65|151.0|52|1|anti-sense L1MA3_dup416|chr1:184925069-184926226:-|1.8966139206901835|0.0188224143390585|6.65|151.0|52|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 455.8020324707031 2 455.802229 909.589904 0.17669 8.0536E-05 -0.25649 -0.00011691 -0.079797 -3.6372E-05 455.8020288841406 95.592 0.18853 99.5 99.342 99.53 3.9084 59 25 3 0 0 0 0.038568 1 22659 22659 53.576 0 1 298890 10683 9425 6597 6603 13299 13299 0.13149306976424668 GLTPHLTMV 9 Oxidation (M) _GLTPHLTM(Oxidation (M))V_ GLTPHLTM(1)V GLTPHLTM(48)V 0 0 1 ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN47_class_I_Rep_2 3 492.76275634765625 2 492.762778 983.511002 0.059715 2.9425E-05 0.067645 3.3333E-05 0.12736 6.2758E-05 492.76275599841404 45.265 0.84194 48.618 48.189 49.031 3.3534 73 48 2 0 0 0 0.051515 1 9514 9514 48.346 18.121 1 147540 10684 4534 6598 6604 13300 13300 144 0.018587116798357783 GLTPLTFTLFK 11 Unmodified _GLTPLTFTLFK_ 0 0 0 Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|56|2|sense Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|56|2|sense Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|56|2|sense MSMS UPN48_class_I_Rep_2 6 619.3626098632812 2 619.363182 1236.71181 NaN NaN NaN NaN NaN NaN NaN 71.635 1 75.185 74.685 75.685 3.5505 0 0 0 0.38417 1 16727 16727 3.2813 0.28607 1 10685 33308 6599 6605 13301 13301 0.10292304268136832 GLTTSKDWI 9 Unmodified _GLTTSKDWI_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|225|2|anti-sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|225|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.7718200683594 2 510.771657 1019.52876 0.28731 0.00014675 -0.27449 -0.0001402 0.012829 6.5526E-06 510.77145096419446 77.855 0.66341 81.137 80.797 81.46 3.2816 195 72 3 0 0 0 0.074399 2 19432 19399;19432 39.95 3.8227 1 607120 + 10686 23714 6600 6606 13302;13303 13303 0.01977750206322071 GLTVWLHRLTA 11 Unmodified _GLTVWLHRLTA_ 0 0 0 ENST00000532739.1_1_16:16463294-16464996:+|nuORF ENST00000532739.1_1_16:16463294-16464996:+|nuORF ENST00000532739.1_1_16:16463294-16464996:+|nuORF MSMS UPN48_class_I_Rep_1 5 633.8710327148438 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 89.129 1 92.752 92.252 93.252 3.6229 0 0 0 0.32232 1 21392 21392 10.8 3.1906 1 10687 7304 6601 6607 13304 13304 0.10220760451034039 GLTVWLHRLTA 11 Unmodified _GLTVWLHRLTA_ 0 0 0 ENST00000532739.1_1_16:16463294-16464996:+|nuORF ENST00000532739.1_1_16:16463294-16464996:+|nuORF ENST00000532739.1_1_16:16463294-16464996:+|nuORF MSMS UPN48_class_I_Rep_1 5 633.8709716796875 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 89.223 1 92.849 92.349 93.349 3.6255 0 0 0 0.37931 1 21417 21417 7.1017 3.8204 1 10688 7304 6601 6607 13305 13305 0.10220760451034039 GLTYTEGSLF 10 Unmodified _GLTYTEGSLF_ 0 0 0 REV__L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|25|2|sense REV__L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.270263671875 2 544.268947 1086.52334 0.49441 0.00026909 -0.13255 -7.2141E-05 0.36186 0.00019695 544.2687721263108 85.739 0.74321 89.355 88.995 89.738 3.6153 143 95 3 0 0 0 0.46161 4 21383 21383;21395;21427;21458 14.838 10.074 1 150550 + 10689 30647 6602 6608 13306;13307;13308;13309 13306 -0.01645973376139409 GLTYTEGSLF 10 Unmodified _GLTYTEGSLF_ 0 0 0 REV__L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|25|2|sense REV__L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.2685546875 2 544.268947 1086.52334 0.52245 0.00028435 -0.27215 -0.00014813 0.25029 0.00013623 544.268726914147 85.763 0.65704 89.195 88.907 89.564 3.4329 142 85 2 0 0 0 0.46161 2 21339 21339;21364 14.838 0.93222 1 169520 + 10690 30647 6602 6608 13310;13311 13310 -0.01645973376139409 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS UPN47_class_I_Rep_1 2 451.271240234375 2 451.271293 900.528032 0.051557 2.3266E-05 -0.25339 -0.00011435 -0.20184 -9.1083E-05 451.2710671248854 72.319 0.44608 75.699 75.506 75.952 3.3799 49 31 2 0 0 0 0.12096 2 17712 17666;17712 29.841 3.5724 1 93380 10691 2547 6603 6609 13312;13313 13313 0.07378955557271638 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MSMS UPN47_class_I_Rep_2 3 451.2711181640625 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 72.552 1 75.849 75.349 76.349 3.2971 0 0 0 0.13613 1 17790 17790 20.415 3.3016 1 10692 2547 6603 6609 13314 13314 0.07378955557271638 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MSMS UPN47_class_I_Rep_2 3 451.27093505859375 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 72.732 1 76.03 75.53 76.53 3.2971 0 0 0 0.10427 1 17845 17845 23.79 3.3752 1 10693 2547 6603 6609 13315 13315 0.07378955557271638 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MSMS UPN47_class_I_Rep_2 3 451.2720642089844 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 72.749 1 76.047 75.547 76.547 3.2971 0 0 0 0.10427 1 17850 17850 23.79 3.3752 1 10694 2547 6603 6609 13316 13316 0.07378955557271638 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS UPN47_class_I_Rep_3 4 451.2709045410156 2 451.271293 900.528032 -0.22026 -9.9396E-05 -0.053335 -2.4069E-05 -0.27359 -0.00012347 451.271181536686 72.614 0.37396 75.841 75.653 76.027 3.2271 49 29 2 0 0 0 0.16799 2 17888 17888;17932 23.79 3.3752 1 100390 10695 2547 6603 6609 13317;13318 13317 0.07378955557271638 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MATCH UPN47_class_I_Rep_3 4 2 451.271293 900.528032 -0.21932 -9.8972E-05 -0.3751 -0.00016927 -0.59441 -0.00026824 451.27101166339025 72.837 0.050262 76.064 76.027 76.077 3.2271 0.18233 -9.0468E-05 NaN 29.841 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 46018 10696 2547 6603 6609 0.07378955557271638 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.7921447753906 2 478.792392 955.570232 0.13846 6.6295E-05 -0.077241 -3.6983E-05 0.061222 2.9313E-05 478.79218598845404 58.746 0.97365 62.163 61.594 62.567 3.4171 113 65 3 0 0 0 0.279 1 13637 13637 15.248 0.8431 1 163810 10697 694 6604 6610 13319 13319 0.0906693096563913 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(94)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN47_class_I_Rep_1 2 456.75213623046875 2 456.752213 911.489873 NaN NaN NaN NaN NaN NaN NaN 50.076 1 53.705 53.205 54.205 3.6285 0 0 0 2.5739E-17 1 10950 10950 93.763 53.314 1 10698 797 6605 6611 13320 13320 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(80)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN47_class_I_Rep_1 2 456.75201416015625 2 456.752213 911.489873 NaN NaN NaN NaN NaN NaN NaN 50.209 1 53.837 53.337 54.337 3.6285 0 0 0 4.7493E-09 1 10990 10990 79.935 47.818 1 10699 797 6605 6611 13321 13321 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(94)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN47_class_I_Rep_1 2 456.75213623046875 2 456.752213 911.489873 NaN NaN NaN NaN NaN NaN NaN 50.342 1 53.971 53.471 54.471 3.6285 0 0 0 2.5739E-17 1 11031 11031 93.763 53.314 1 10700 797 6605 6611 13322 13322 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(110)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN47_class_I_Rep_1 2 456.7521057128906 2 456.752213 911.489873 NaN NaN NaN NaN NaN NaN NaN 50.5 1 54.128 53.628 54.628 3.6285 0 0 0 5.8609E-33 1 11079 11079 109.15 60.808 1 10701 797 6605 6611 13323 13323 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(110)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN47_class_I_Rep_1 2 456.7521667480469 2 456.752213 911.489873 NaN NaN NaN NaN NaN NaN NaN 50.643 1 54.272 53.772 54.772 3.6285 0 0 0 5.8609E-33 1 11123 11123 109.15 62.233 1 10702 797 6605 6611 13324 13324 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(56)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MSMS UPN47_class_I_Rep_1 2 456.7520751953125 2 456.752213 911.489873 NaN NaN NaN NaN NaN NaN NaN 50.783 1 54.412 53.912 54.912 3.6285 0 0 0 0.011822 1 11166 11166 56.048 27.875 1 10703 797 6605 6611 13325 13325 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(94)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MULTI-MSMS UPN47_class_I_Rep_2 3 456.752197265625 2 456.752213 911.489873 -0.057233 -2.6141E-05 0.0904 4.129E-05 0.033166 1.5149E-05 456.752161795376 51.086 1.4704 54.425 53.517 54.987 3.3386 136 75 2 0 0 0 0.0048075 7 11130 11086;11130;11172;11215;11257;11306;11345 93.763 53.314 1 286630 10704 797 6605 6611 13326;13327;13328;13329;13330;13331;13332 13327 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(80)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MULTI-MSMS UPN47_class_I_Rep_3 4 456.7519836425781 2 456.752213 911.489873 -0.0966 -4.4122E-05 0.044026 2.0109E-05 -0.052574 -2.4013E-05 456.75214687721825 50.679 0.54006 53.895 53.518 54.058 3.2163 54 30 2 0 0 0 0.0053953 2 11235 11197;11235 79.935 47.818 1 197560 10705 797 6605 6611 13333;13334 13334 10 0.03058746370982135 GLVGALMHV 9 Oxidation (M) _GLVGALM(Oxidation (M))HV_ GLVGALM(1)HV GLVGALM(94)HV 0 0 1 ENSG00000015285|ENST00000376701|WAS;ENST00000470107.1_1_X:48547419-48547927:+|nuORF ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MULTI-MSMS UPN47_class_I_Rep_3 4 456.75201416015625 2 456.752213 911.489873 -0.07247 -3.3101E-05 0.19828 9.0563E-05 0.12581 5.7462E-05 456.7521986776308 51.147 0.9631 54.363 54.043 55.006 3.2163 82 48 2 0 0 0 0.0048075 4 11281 11281;11321;11368;11415 109.15 62.233 1 320670 10706 797 6605 6611 13335;13336;13337;13338 13335 10 0.03058746370982135 GLVISHVN 8 Unmodified _GLVISHVN_ 0 0 0 REV__L1PA10_dup6864|chr20:60195422-60199551:-|1.0475448070377726|0.0182796678825509|5.84|150.0|229|2|anti-sense REV__L1PA10_dup6864|chr20:60195422-60199551:-|1.0475448070377726|0.0182796678825509|5.84|150.0|229|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 419.7420654296875 2 419.742702 837.470852 0.082166 3.4489E-05 -1.4207 -0.00059632 -1.3385 -0.00056183 419.7419467610961 107.65 0.11812 111.33 111.27 111.39 3.6783 26 15 3 0 0 0 0.82752 1 25453 25453 4.756 0 1 6320200 + 10707 28987 6606 6612 13339 13339 0.04561533071557733 GLVLPKKMG 9 Unmodified _GLVLPKKMG_ 0 0 0 REV__ENSG00000008226|ENST00000308059|DLEC1 REV__ENSG00000008226|ENST00000308059|DLEC1 MSMS UPN47_class_I_Rep_1 2 471.7834167480469 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 116.73 1 120.33 119.83 120.83 3.6036 0 0 0 0.4007 1 28917 28917 0.52476 0.52476 1 + 10708 17551 6607 6613 13340 13340 0.1000848281881872 GLVNYQISV 9 Unmodified _GLVNYQISV_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;chr5:71208130-71222295|37|23.73|0.43|5.77|-|2|GUSBP9,GUSBP17|1;ENST00000475316.5_1_7:65439511-65446985:-|nuORF;ENSG00000253203.6,GUSBP3,chr5,-,I2.1,69642290,69645881|84|8.26|1|intron ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_1 2 496.774169921875 2 496.7742 991.533846 0.12256 6.0884E-05 -0.11533 -5.7295E-05 0.0072258 3.5896E-06 496.7741452772787 66.642 0.57806 70 69.745 70.323 3.3576 71 40 2 0 0 0 0.019142 4 15977 15934;15977;16015;16054 63.961 33.324 1 177900 10709 4446 6608 6614 13341;13342;13343;13344 13342 0.03774054068958321 GLVNYQISV 9 Unmodified _GLVNYQISV_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;chr5:71208130-71222295|37|23.73|0.43|5.77|-|2|GUSBP9,GUSBP17|1;ENST00000475316.5_1_7:65439511-65446985:-|nuORF;ENSG00000253203.6,GUSBP3,chr5,-,I2.1,69642290,69645881|84|8.26|1|intron ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_2 3 496.7742004394531 2 496.7742 991.533846 0.18329 9.1056E-05 -0.18096 -8.9897E-05 0.0023327 1.1588E-06 496.77407573388456 66.849 0.63208 70.112 69.889 70.521 3.2636 79 46 2 0 0 0 0.10225 3 16138 16056;16099;16138 33.445 15.299 1 152090 10710 4446 6608 6614 13345;13346;13347 13347 0.03774054068958321 GLVNYQISV 9 Unmodified _GLVNYQISV_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;chr5:71208130-71222295|37|23.73|0.43|5.77|-|2|GUSBP9,GUSBP17|1;ENST00000475316.5_1_7:65439511-65446985:-|nuORF;ENSG00000253203.6,GUSBP3,chr5,-,I2.1,69642290,69645881|84|8.26|1|intron ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_3 4 496.77435302734375 2 496.7742 991.533846 0.21633 0.00010747 0.097721 4.8545E-05 0.31405 0.00015601 496.77417736987644 66.87 0.64751 70.062 69.817 70.464 3.1914 105 49 3 0 0 0 0.053261 3 16158 16121;16158;16195 47.594 23.574 1 184490 10711 4446 6608 6614 13348;13349;13350 13349 0.03774054068958321 GLVTKQLRLN 10 Unmodified _GLVTKQLRLN_ 0 0 0 MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.8563842773438 2 571.356222 1140.69789 0.47795 0.00027308 0.074007 4.2284E-05 0.55196 0.00031536 571.3567285771218 108.25 0.037033 108.25 108.22 108.26 0 5 3 2 0 0 0 0.48573 1 26461 26461 13.042 0.80181 1 2737300 10712 16128 6609 6615 13351 13351 0.13317071559686156 GLVTKQLRLN 10 Unmodified _GLVTKQLRLN_ 0 0 0 MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 571.3572998046875 2 571.356222 1140.69789 NaN NaN NaN NaN NaN NaN NaN 108.09 1 108.09 107.59 108.59 0 0 0 0 0.53105 1 26404 26404 13.042 1.4022 1 10713 16128 6609 6615 13352 13352 0.13317071559686156 GLVTKQLRLN 10 Unmodified _GLVTKQLRLN_ 0 0 0 MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 571.3564453125 2 571.356222 1140.69789 0.39929 0.00022814 0.38109 0.00021774 0.78038 0.00044588 571.3562811126276 107.88 0.39231 111.51 111.42 111.81 3.6313 95 34 4 0 0 0 0.48573 1 26022 26022 13.042 2.9685 1 35396000 10714 16128 6609 6615 13353 13353 0.13317071559686156 GLVTRLRE 8 Unmodified _GLVTRLRE_ 0 0 0 nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1 nc|ENSG00000033011|Q9BT22-2|ALG1 nc|ENSG00000033011|Q9BT22-2|ALG1 MULTI-MSMS UPN48_class_I_Rep_3 7 472.2876281738281 2 472.287808 942.561064 0.22964 0.00010845 -0.0042505 -2.0075E-06 0.22539 0.00010645 472.2878176896854 85.962 1.1338 89.733 89.257 90.39 3.7701 508 142 5 0 0 0 0.82752 1 20514 20514 4.756 0 1 10760000 10715 838 6610 6616 13354 13354 0.08748582399982752 GLWGNNPIYGF 11 Unmodified _GLWGNNPIYGF_ 0 0 0 REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|235|3|anti-sense REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|235|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.3040771484375 2 619.303655 1236.59276 0.54996 0.00034059 -0.061011 -3.7785E-05 0.48895 0.00030281 619.8051543176532 59.473 0.43676 62.99 62.591 63.028 3.5169 37 28 2 0 0 0 0.67113 1 12925 12925 1.3295 0.36726 1 128430 + 10716 29254 6611 6617 13355 13355 -0.016074696367240904 GLWINPLIKN 10 Unmodified _GLWINPLIKN_ 0 0 0 REV__nc|ENSG00000112425|O95278-7|EPM2A REV__nc|ENSG00000112425|O95278-7|EPM2A MSMS UPN46_class_I_Rep_3 1 584.3480834960938 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 40.968 1 40.968 40.468 41.468 0 0 0 0 0.53105 1 7990 7990 1.4819 0 1 + 10717 31963 6612 6618 13356 13356 0.10450570673765469 GLWKVRAFF 9 Unmodified _GLWKVRAFF_ 0 0 0 LTR2_dup34|chr1:148406830-148407280:+|1.293760658508568|0.1054706718405862|3.62|150.0|16|1|anti-sense LTR2_dup34|chr1:148406830-148407280:+|1.293760658508568|0.1054706718405862|3.62|150.0|16|1|anti-sense LTR2_dup34|chr1:148406830-148407280:+|1.293760658508568|0.1054706718405862|3.62|150.0|16|1|anti-sense MSMS UPN47_class_I_Rep_3 4 561.8709716796875 2 562.324194 1122.63383 NaN NaN NaN NaN NaN NaN NaN 108.2 1 111.74 111.24 112.24 3.5382 0 0 0 0.36505 1 26459 26459 7.2892 0.56607 1 10718 15597 6613 6619 13357 13357 0.07742336193405208 GLWLPTNR 8 Unmodified _GLWLPTNR_ 0 0 0 REV__ENST00000196061.4_1_1:12034968-12035118:+|nuORF REV__ENST00000196061.4_1_1:12034968-12035118:+|nuORF MSMS UPN47_class_I_Rep_1 2 478.76812744140625 2 478.769252 955.52395 NaN NaN NaN NaN NaN NaN NaN 31.008 1 34.737 34.237 35.237 3.7293 0 0 0 0.40738 1 5144 5144 0.79363 0 1 + 10719 21467 6614 6620 13358 13358 0.04440910854214053 GLWLSQME 8 Unmodified _GLWLSQME_ 0 0 0 MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|37|3|sense MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|37|3|sense MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|37|3|sense MSMS UPN48_class_I_Rep_3 7 482.2919921875 2 482.233853 962.453153 NaN NaN NaN NaN NaN NaN NaN 35.236 1 38.909 38.409 39.409 3.6721 0 0 0 0.40604 1 5688 5688 2.5775 0 1 10720 16561 6615 6621 13359 13359 -0.029575502456054892 GLWLVKYPPPL 11 Unmodified _GLWLVKYPPPL_ 0 0 0 REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|23|2|sense REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|23|2|sense MSMS UPN46_class_I_Rep_3 1 641.8831176757812 2 641.881542 1281.74853 NaN NaN NaN NaN NaN NaN NaN 91.877 1 91.877 91.377 92.377 0 0 0 0 0.38417 1 22212 22212 1.3295 0 1 + 10721 30710 6616 6622 13360 13360 0.11892600884698368 GLWLVRVK 8 Unmodified _GLWLVRVK_ 0 0 0 REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|163|1|anti-sense REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|163|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 63.86 1 67.215 66.715 67.715 3.3557 0 0 0 0.40738 1 15138 15138 0.79363 0 1 + 10722 23562 6617 6623 13361 13361 0.12634951164693575 GLWTLYLE 8 Unmodified _GLWTLYLE_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MSMS UPN46_class_I_Rep_3 1 497.7654113769531 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 87.099 1 87.099 86.599 87.599 0 0 0 0 0.40738 1 20851 20851 0.79363 0 1 10723 3123 6618 6624 13362 13362 0.020115531829901556 GLWVKLVP 8 Unmodified _GLWVKLVP_ 0 0 0 HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|232|1|anti-sense;HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|159|3|anti-sense;HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|204|1|anti-sense;HERV9-int_dup117|chr7:37202715-37204174:-|4.163171206754798|0.065795383563829|5.98|151.0|58|2|anti-sense;HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|345|3|anti-sense;HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|273|2|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|232|1|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|232|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.2870788574219 2 456.289288 910.564024 NaN NaN NaN NaN NaN NaN NaN 23.622 1 27.087 26.587 27.587 3.4655 0 0 0 0.40738 1 3000 3000 0.79363 0 1 10724 8065 6619 6625 13363 13363 0.10516457524795442 GLWVKLVP 8 Unmodified _GLWVKLVP_ 0 0 0 HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|232|1|anti-sense;HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|159|3|anti-sense;HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|204|1|anti-sense;HERV9-int_dup117|chr7:37202715-37204174:-|4.163171206754798|0.065795383563829|5.98|151.0|58|2|anti-sense;HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|345|3|anti-sense;HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|273|2|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|232|1|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|232|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.2872314453125 2 456.289288 910.564024 NaN NaN NaN NaN NaN NaN NaN 23.895 1 27.361 26.861 27.861 3.4655 0 0 0 0.40738 1 3079 3079 0.79363 0 1 10725 8065 6619 6625 13364 13364 0.10516457524795442 GLWWFIKV 8 Unmodified _GLWWFIKV_ 0 0 0 Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|41|1|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|41|1|anti-sense Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|41|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.7931518554688 2 524.802563 1047.59057 0.2895 0.00015193 2.975 0.0015613 3.2645 0.0017132 524.8051725235176 61.469 0.46225 64.636 64.389 64.852 3.1667 38 34 2 0 0 0 0.82752 1 14566 14566 2.3027 0 1 76036 10726 474 6620 6626 13365 13365 0.06868146416127274 GLYKLVIT 8 Unmodified _GLYKLVIT_ 0 0 0 REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_1 2 453.7846984863281 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 53.788 1 57.316 56.816 57.816 3.5278 0 0 0 0.40746 1 12080 12080 0.69038 0 1 + 10727 30768 6621 6627 13366 13366 0.10204733942305211 GLYKLVIT 8 Unmodified _GLYKLVIT_ 0 0 0 REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_1 2 453.7845764160156 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 82.371 1 85.883 85.383 86.383 3.5122 0 0 0 0.40746 1 20577 20577 0.69038 0 1 + 10728 30768 6621 6627 13367 13367 0.10204733942305211 GLYKLVIT 8 Unmodified _GLYKLVIT_ 0 0 0 REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7845458984375 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 18.439 1 21.829 21.329 22.329 3.3898 0 0 0 0.40746 1 1557 1557 0.69038 0 1 + 10729 30768 6621 6627 13368 13368 0.10204733942305211 GLYKLVIT 8 Unmodified _GLYKLVIT_ 0 0 0 REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense REV__LOR1-int_dup250|chr2:230533081-230534128:+|1.3765418128642712|0.1243902798095113|3.47|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78472900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 21.774 1 25.198 24.698 25.698 3.4241 0 0 0 0.40746 1 2482 2482 0.69038 0 1 + 10730 30768 6621 6627 13369 13369 0.10204733942305211 GLYPNLIQV 9 Unmodified _GLYPNLIQV_ 0 0 0 nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 MULTI-MSMS UPN47_class_I_Rep_1 2 508.7919006347656 2 508.792392 1015.57023 0.24471 0.00012451 -1.2227 -0.0006221 -0.97798 -0.00049759 508.7915089221825 77.145 0.49985 80.56 80.297 80.797 3.4149 78 41 2 0 0 0 0.21527 1 19087 19087 19.257 4.4187 1 236770 10731 2734 6622 6628 13370 13370 0.06306930965672564 GLYPNLIQV 9 Unmodified _GLYPNLIQV_ 0 0 0 nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 MULTI-MSMS UPN47_class_I_Rep_2 3 508.79168701171875 2 508.792392 1015.57023 0.17953 9.1342E-05 -1.1022 -0.00056081 -0.92272 -0.00046947 508.7917261190629 77.266 0.50496 80.597 80.383 80.888 3.3315 96 50 2 0 0 0 0.1249 1 19142 19142 29.082 2.8134 1 171640 10732 2734 6622 6628 13371 13371 0.06306930965672564 GLYPNLIQV 9 Unmodified _GLYPNLIQV_ 0 0 0 nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 MSMS UPN47_class_I_Rep_3 4 508.79266357421875 2 508.792392 1015.57023 NaN NaN NaN NaN NaN NaN NaN 77.227 1 80.496 79.996 80.996 3.269 0 0 0 0.096434 1 19223 19223 25.399 3.6527 1 10733 2734 6622 6628 13372 13372 0.06306930965672564 GLYSSDYAPL 10 Unmodified _GLYSSDYAPL_ 0 0 0 MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.7636108398438 2 543.261122 1084.50769 0.48914 0.00026573 0.077042 4.1854E-05 0.56618 0.00030758 543.7628466678505 85.791 0.14295 89.406 89.389 89.532 3.6153 23 17 2 0 0 0 0.33585 1 21424 21424 25.399 6.1423 1 146510 10734 16285 6623 6629 13373 13373 -0.03118259893199138 GLYSSDYAPL 10 Unmodified _GLYSSDYAPL_ 0 0 0 MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 543.261122 1084.50769 0.48914 0.00026573 0.077042 4.1854E-05 0.56618 0.00030758 543.7628466678505 85.791 0.14295 89.406 89.389 89.532 3.6153 0.097854 5.5924E-05 NaN 25.399 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 146510 10735 16285 6623 6629 -0.03118259893199138 GLYSSDYAPL 10 Unmodified _GLYSSDYAPL_ 0 0 0 MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 543.261122 1084.50769 0.52041 0.00028272 0.074128 4.0271E-05 0.59454 0.00032299 543.2611350192618 85.904 0.12102 89.337 89.241 89.362 3.4329 0.02855 5.2759E-05 NaN 25.399 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 52444 10736 16285 6623 6629 -0.03118259893199138 GLYSSDYAPL 10 Unmodified _GLYSSDYAPL_ 0 0 0 MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MLT1B_dup9791|chr9:90810118-90810522:-|1.469390351671786|0.0085002171225359|7.43|151.0|8|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 543.261122 1084.50769 0.46848 0.00025451 -0.1252 -6.8018E-05 0.34327 0.00018649 543.2609511632197 85.81 0.17256 89.182 89.091 89.263 3.3716 -0.1264 -0.00016382 NaN 25.399 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 222710 10737 16285 6623 6629 -0.03118259893199138 GLYYWESC 8 Unmodified _GLYYWESC_ 0 0 0 REV__L1PA5_dup3008|chr4:112161085-112164263:+|1.7622145728230152|0.1610762470690486|3.45|151.0|140|2|anti-sense REV__L1PA5_dup3008|chr4:112161085-112164263:+|1.7622145728230152|0.1610762470690486|3.45|151.0|140|2|anti-sense MSMS UPN48_class_I_Rep_1 5 510.7109680175781 2 510.710211 1019.40587 NaN NaN NaN NaN NaN NaN NaN 40.878 1 44.384 43.884 44.884 3.506 0 0 0 0.40738 1 7384 7384 0.79363 0 1 + 10738 29749 6624 6630 13374 13374 -0.10305829516596532 GMCLLVYL 8 Unmodified _GMCLLVYL_ 0 0 0 L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|32|2|anti-sense L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|32|2|anti-sense L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|32|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 456.2393493652344 2 456.240092 910.465632 0.20178 9.206E-05 -1.0158 -0.00046345 -0.81402 -0.00037139 456.23951231823787 100.61 0.059303 100.61 100.59 100.65 0 6 4 2 0 0 0 0.82752 1 24536 24536 2.8892 0 1 223070 10739 12473 6625 6631 13375 13375 0.006817698930831284 GMCLLVYL 8 Unmodified _GMCLLVYL_ 0 0 0 L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|32|2|anti-sense L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|32|2|anti-sense L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|32|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 456.240092 910.465632 0.16788 7.6592E-05 -2.4061 -0.0010978 -2.2382 -0.0010212 456.2397146975682 96.592 0.075737 100.37 100.35 100.43 3.7804 -0.11883 -0.0010331 NaN 2.8892 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 61066 10740 12473 6625 6631 0.006817698930831284 GMCTHRIQD 9 Unmodified _GMCTHRIQD_ 0 0 0 REV__Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|342|3|anti-sense REV__Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|342|3|anti-sense MSMS UPN47_class_I_Rep_1 2 530.7357177734375 2 530.736768 1059.45898 NaN NaN NaN NaN NaN NaN NaN 21.356 1 25 24.5 25.5 3.6436 0 0 0 0.3967 1 2303 2303 1.4819 0.68827 1 + 10741 23526 6626 6632 13376 13376 -0.0683677500558133 GMFCCCCY 8 Unmodified _GMFCCCCY_ 0 0 0 ENST00000494000.1_1_3:172048292-172052928:+|nuORF ENST00000494000.1_1_3:172048292-172052928:+|nuORF ENST00000494000.1_1_3:172048292-172052928:+|nuORF MSMS UPN46_class_I_Rep_3 1 465.126708984375 2 465.127773 928.240993 NaN NaN NaN NaN NaN NaN NaN 40.627 1 40.627 40.127 41.127 0 0 0 0 0.40738 1 7899 7899 0.79363 0.10326 1 10742 7086 6627 6633 13377 13377 -0.22599747515573654 GMFIKIVH 8 Unmodified _GMFIKIVH_ 0 0 0 L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|42|2|sense L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|42|2|sense L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|42|2|sense MSMS UPN46_class_I_Rep_3 1 472.7719421386719 2 472.772948 943.531344 NaN NaN NaN NaN NaN NaN NaN 81.569 1 81.569 81.069 82.069 0 0 0 0 0.40738 1 19269 19269 0.79363 0 1 10743 13283 6628 6634 13378 13378 0.057319271302844754 GMHNLITNTK 10 Unmodified _GMHNLITNTK_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MSMS UPN48_class_I_Rep_1 5 565.0474853515625 2 564.79514 1127.57573 NaN NaN NaN NaN NaN NaN NaN 26.56 1 30.127 29.627 30.627 3.5667 0 0 0 0.53105 1 3280 3280 1.6526 0 1 10744 3096 6629 6635 13379 13379 0.017042864858012763 GMIDEPHA 8 Unmodified _GMIDEPHA_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;ENST00000556356.1_1_12:57598740-57602363:+|nuORF ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS UPN47_class_I_Rep_2 3 435.1949768066406 2 435.194728 868.374903 NaN NaN NaN NaN NaN NaN NaN 56.685 1 59.986 59.486 60.486 3.3009 0 0 0 0.40364 1 12996 12996 5.7604 3.1829 1 10745 2422 6630 6636 13380 13380 -0.06454982830837253 GMIMKVVCLE 10 Unmodified _GMIMKVVCLE_ 0 0 0 REV__LTR23-int_dup84|chr9:98111958-98112518:+|2.233554475027376|0.2169949784273319|3.36|151.0|14|2|sense REV__LTR23-int_dup84|chr9:98111958-98112518:+|2.233554475027376|0.2169949784273319|3.36|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 561.7881469726562 2 561.789623 1121.56469 NaN NaN NaN NaN NaN NaN NaN 63.354 1 66.863 66.363 67.363 3.5091 0 0 0 0.53105 1 14157 14157 2.9952 0.41776 1 + 10746 30882 6631 6637 13381 13381 0.008774247956807812 GMLDPLQDII 10 Unmodified _GMLDPLQDII_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MSMS UPN46_class_I_Rep_3 1 557.7937622070312 2 557.794275 1113.574 NaN NaN NaN NaN NaN NaN NaN 15.142 1 15.142 14.642 15.642 0 0 0 0 0.53105 1 807 807 1.6526 0.96225 1 + 10747 17789 6632 6638 13382 13382 0.021752326772229935 GMLYMVFEF 9 Unmodified _GMLYMVFEF_ 0 0 0 ENST00000468986.6_1_X:41602925-41782241:-|nuORF;nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK ENST00000468986.6_1_X:41602925-41782241:-|nuORF ENST00000468986.6_1_X:41602925-41782241:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 568.7613525390625 2 568.761389 1135.50822 0.18602 0.0001058 -0.34443 -0.0001959 -0.15841 -9.01E-05 568.7612075912408 29.025 0.46104 29.025 28.803 29.264 0 51 38 2 0 0 0 0.46434 1 4541 4541 4.3292 1.594 1 62607 10748 3456 6633 6639 13383 13383 -0.05410879769328858 GMMVAWFRWL 10 Unmodified _GMMVAWFRWL_ 0 0 0 REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|270|2|anti-sense REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|270|2|anti-sense MSMS UPN47_class_I_Rep_2 3 432.8851013183594 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 64.469 1 67.725 67.225 68.225 3.2556 0 0 0 0.53105 1 15360 15360 0.15932 0 1 + 10749 30045 6634 6640 13384 13384 -0.0052499824723781785 GMRYHLLS 8 Unmodified _GMRYHLLS_ 0 0 0 nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7 nc|ENSG00000122550|Q8IXQ5-5|KLHL7 nc|ENSG00000122550|Q8IXQ5-5|KLHL7 MSMS UPN46_class_I_Rep_3 1 488.7557678222656 2 488.755287 975.496021 NaN NaN NaN NaN NaN NaN NaN 28.796 1 28.796 28.296 29.296 0 0 0 0 0.40625 1 4473 4473 2.3027 0.24298 1 10750 2392 6635 6641 13385 13385 0.007292646024893656 GMTELYFQL 9 Oxidation (M) _GM(Oxidation (M))TELYFQL_ GM(1)TELYFQL GM(42)TELYFQL 0 0 1 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_1 2 559.2653198242188 2 559.26535 1116.51615 0.40528 0.00022666 -0.086843 -4.8568E-05 0.31844 0.00017809 559.2651307766016 76.106 0.43045 79.51 79.383 79.813 3.4034 67 38 2 0 0 0 0.066633 1 18792 18792 41.84 16.44 1 265440 10751 5749 6636 6642 13386 13386 173 -0.037450292482162695 GMTELYFQL 9 Oxidation (M) _GM(Oxidation (M))TELYFQL_ GM(1)TELYFQL GM(42)TELYFQL 0 0 1 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_2 3 559.2652587890625 2 559.26535 1116.51615 0.46505 0.00026009 -0.19518 -0.00010916 0.26987 0.00015093 559.2651154228421 76.136 0.79378 79.457 79.095 79.889 3.3216 181 79 3 0 0 0 0.066633 1 18813 18813 41.84 16.44 1 421800 10752 5749 6636 6642 13387 13387 173 -0.037450292482162695 GMVVDACD 8 Unmodified _GMVVDACD_ 0 0 0 AluSq2_dup55019|chr19:8530758-8531072:+|1.5131866949306358|0.1365813290542375|3.47|151.0|3|1|sense AluSq2_dup55019|chr19:8530758-8531072:+|1.5131866949306358|0.1365813290542375|3.47|151.0|3|1|sense AluSq2_dup55019|chr19:8530758-8531072:+|1.5131866949306358|0.1365813290542375|3.47|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 405.2997741699219 2 405.162039 808.309525 NaN NaN NaN NaN NaN NaN NaN 81.757 1 85.081 84.581 85.581 3.3231 0 0 0 0.40738 1 20472 20472 0.79363 0 1 10753 264 6637 6643 13388 13388 -0.10229720348206683 GMYETPLFL 9 Oxidation (M) _GM(Oxidation (M))YETPLFL_ GM(1)YETPLFL GM(67)YETPLFL 0 0 1 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS UPN47_class_I_Rep_1 2 543.7626342773438 2 543.762443 1085.51033 0.43926 0.00023885 -0.19283 -0.00010485 0.24643 0.000134 543.762309798809 77.137 0.76308 80.552 80.149 80.912 3.4149 155 69 3 0 0 0 0.013968 3 19125 19053;19089;19125 67.344 49.209 1 461960 10754 886 6638 6644 13389;13390;13391 13391 17 -0.029001277598808883 GMYETPLFL 9 Oxidation (M) _GM(Oxidation (M))YETPLFL_ GM(1)YETPLFL GM(64)YETPLFL 0 0 1 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS UPN47_class_I_Rep_2 3 543.7625122070312 2 543.762443 1085.51033 0.44137 0.00024 -0.24485 -0.00013314 0.19652 0.00010686 543.7622720891817 77.201 0.81981 80.533 80.217 81.036 3.3315 206 82 3 0 0 0 0.018707 3 19116 19116;19154;19191 64.236 49.655 1 385100 10755 886 6638 6644 13392;13393;13394 13392 17 -0.029001277598808883 GMYETPLFL 9 Oxidation (M) _GM(Oxidation (M))YETPLFL_ GM(1)YETPLFL GM(89)YETPLFL 0 0 1 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS UPN47_class_I_Rep_3 4 543.7625732421875 2 543.762443 1085.51033 0.44871 0.00024399 -0.17573 -9.5554E-05 0.27298 0.00014844 543.7623309963211 77.307 0.99745 80.576 80.157 81.155 3.269 248 108 3 0 0 0 0.0063122 4 19259 19185;19222;19259;19294 89.427 66.278 1 425520 10756 886 6638 6644 13395;13396;13397;13398 13397 17 -0.029001277598808883 GMYETPLFL 9 Oxidation (M) _GM(Oxidation (M))YETPLFL_ 0 0 1 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MATCH UPN48_class_I_Rep_3 7 2 543.762443 1085.51033 0.54365 0.00029561 -0.85568 -0.00046529 -0.31203 -0.00016967 543.7624549736042 76.987 0.059448 80.589 80.543 80.602 3.6016 0.0267 -0.00070035 NaN 89.427 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 35320 10757 886 6638 6644 17 -0.029001277598808883 GMYIFLHTV 9 Oxidation (M) _GM(Oxidation (M))YIFLHTV_ GM(1)YIFLHTV GM(94)YIFLHTV 0 0 1 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN46_class_I_Rep_3 1 548.7782592773438 2 548.778428 1095.5423 0.33122 0.00018177 -0.012776 -7.011E-06 0.31845 0.00017476 548.778373048175 64.565 0.27479 64.565 64.489 64.763 0 50 26 2 0 0 0 0.0047657 1 14526 14526 93.883 12.019 1 288040 10758 4559 6639 6645 13399 13399 146 -0.0016471528608690278 GMYIFLHTV 9 Oxidation (M) _GM(Oxidation (M))YIFLHTV_ GM(1)YIFLHTV GM(120)YIFLHTV 0 0 1 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_1 2 548.7782592773438 2 548.778428 1095.5423 0.43418 0.00023827 -0.49112 -0.00026951 -0.056941 -3.1248E-05 548.778111040575 58.581 0.83629 61.999 61.659 62.495 3.4171 128 54 3 0 0 0 0.0069861 2 13540 13540;13578 123.1 27.765 1 509280 10759 4559 6639 6645 13400;13401 13400 146 -0.0016471528608690278 GMYIFLHTV 9 Oxidation (M) _GM(Oxidation (M))YIFLHTV_ GM(1)YIFLHTV GM(120)YIFLHTV 0 0 1 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_2 3 548.7783813476562 2 548.778428 1095.5423 0.49944 0.00027408 -0.64447 -0.00035367 -0.14504 -7.9593E-05 548.7780586288621 58.891 0.89858 62.173 61.76 62.658 3.2818 143 57 3 0 0 0 0.0069861 3 13663 13612;13663;13703 123.1 29.213 1 428710 10760 4559 6639 6645 13402;13403;13404 13403 146 -0.0016471528608690278 GMYIFLHTV 9 Oxidation (M) _GM(Oxidation (M))YIFLHTV_ GM(1)YIFLHTV GM(120)YIFLHTV 0 0 1 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_3 4 548.7783813476562 2 548.778428 1095.5423 0.3379 0.00018543 -0.41878 -0.00022982 -0.080879 -4.4384E-05 548.7780944005424 58.964 0.90953 62.13 61.802 62.712 3.1658 132 54 3 0 0 0 0.0069861 3 13711 13711;13748;13794 123.1 29.213 1 517570 10761 4559 6639 6645 13405;13406;13407 13405 146 -0.0016471528608690278 GNGFELEIP 9 Unmodified _GNGFELEIP_ 0 0 0 L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|7|1|sense L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|7|1|sense L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 488.24322509765625 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 73.162 1 76.548 76.048 77.048 3.3861 0 0 0 0.39518 1 17948 17948 1.8442 0 1 10762 11329 6640 6646 13408 13408 -0.017345117191098325 GNHLFAMNFL 10 Unmodified _GNHLFAMNFL_ 0 0 0 L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|213|1|anti-sense L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|213|1|anti-sense L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|213|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.2860717773438 2 582.286951 1162.55935 NaN NaN NaN NaN NaN NaN NaN 44.075 1 47.431 46.931 47.931 3.356 0 0 0 0.53105 1 9155 9155 1.4819 0.51963 1 10763 15380 6641 6647 13409 13409 -0.015427946802901715 GNHPQRRHE 9 Unmodified _GNHPQRRHE_ 0 0 0 REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MSMS UPN47_class_I_Rep_1 2 565.7822265625 2 565.781745 1129.54894 NaN NaN NaN NaN NaN NaN NaN 29.731 1 33.489 32.989 33.989 3.7578 0 0 0 0.39428 1 4764 4764 2.0598 0 1 + 10764 21017 6642 6648 13410 13410 -0.010656412904836543 GNHYMFLV 8 Unmodified _GNHYMFLV_ 0 0 0 L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|61|2|sense L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|61|2|sense L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|61|2|sense MSMS UPN47_class_I_Rep_3 4 490.78204345703125 2 490.736563 979.458573 NaN NaN NaN NaN NaN NaN NaN 37.797 1 41.038 40.538 41.538 3.2414 0 0 0 0.40738 1 7287 7287 0.79363 0 1 10765 10931 6643 6649 13411 13411 -0.031978266631199403 GNKILSLDTQ 10 Unmodified _GNKILSLDTQ_ 0 0 0 REV__L1MEd_dup18772|chr16:24961991-24962983:+|2.216630512801518|0.0815431876168077|4.76|151.0|7|1|sense REV__L1MEd_dup18772|chr16:24961991-24962983:+|2.216630512801518|0.0815431876168077|4.76|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 544.8013916015625 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 20.736 1 24.086 23.586 24.586 3.3496 0 0 0 0.53105 1 2194 2194 2.9952 0.69251 1 + 10766 28554 6644 6650 13412 13412 0.04704806780796389 GNKWKCIH 8 Unmodified _GNKWKCIH_ 0 0 0 MLT1H2_dup1685|chr5:177540377-177540795:+|1.132545696123629|0.3847683029502109|1.56|151.0|24|3|anti-sense MLT1H2_dup1685|chr5:177540377-177540795:+|1.132545696123629|0.3847683029502109|1.56|151.0|24|3|anti-sense MLT1H2_dup1685|chr5:177540377-177540795:+|1.132545696123629|0.3847683029502109|1.56|151.0|24|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 493.7864685058594 2 493.255454 984.496355 0.16372 8.0756E-05 0.49715 0.00024522 0.66087 0.00032598 493.2555880436484 108.9 0.23531 112.53 112.49 112.73 3.6321 36 28 2 0 0 0 0.72333 1 26418 26418 2.3027 0 1 2582200 10767 16446 6645 6651 13413 13413 0.003486843223527103 GNKYGKKL 8 Unmodified _GNKYGKKL_ 0 0 0 REV__L1PB1_dup5664|chr7:37279920-37281388:+|1.372388708089822|0.0104509953227822|7.04|151.0|11|1|sense REV__L1PB1_dup5664|chr7:37279920-37281388:+|1.372388708089822|0.0104509953227822|7.04|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 454.2713317871094 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 28.568 1 32.067 31.567 32.567 3.4986 0 0 0 0.40625 1 4450 4450 2.3027 0 1 + 10768 30449 6646 6652 13414 13414 0.0716979499700301 GNLGSMQPPPS 11 Unmodified _GNLGSMQPPPS_ 0 0 0 AluSz_dup93690|chr19:16091499-16091746:+|2.195063038081127|0.4153199758884497|2.4|151.0|16|3|anti-sense AluSz_dup93690|chr19:16091499-16091746:+|2.195063038081127|0.4153199758884497|2.4|151.0|16|3|anti-sense AluSz_dup93690|chr19:16091499-16091746:+|2.195063038081127|0.4153199758884497|2.4|151.0|16|3|anti-sense MSMS UPN47_class_I_Rep_3 4 542.7564697265625 2 542.758223 1083.50189 NaN NaN NaN NaN NaN NaN NaN 25.149 1 28.5 28 29 3.3509 0 0 0 0.38417 1 3489 3489 0.96228 0.16864 1 10769 371 6647 6653 13415 13415 -0.03651681676501539 GNMHRRQYL 9 Unmodified _GNMHRRQYL_ 0 0 0 REV__L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|57|3|sense REV__L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|57|3|sense MSMS UPN47_class_I_Rep_3 4 587.8004150390625 2 587.798549 1173.58254 NaN NaN NaN NaN NaN NaN NaN 38.432 1 41.673 41.173 42.173 3.2414 0 0 0 0.39428 1 7481 7481 2.0598 0 1 + 10770 27770 6648 6654 13416 13416 0.0026964415708334855 GNPWCSLARRH 11 Unmodified _GNPWCSLARRH_ 0 0 0 MLT1C_dup13816|chr12:104556377-104556698:-|1.3781506335275298|0.0070378020355221|7.61|151.0|17|3|anti-sense MLT1C_dup13816|chr12:104556377-104556698:-|1.3781506335275298|0.0070378020355221|7.61|151.0|17|3|anti-sense MLT1C_dup13816|chr12:104556377-104556698:-|1.3781506335275298|0.0070378020355221|7.61|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_1 5 432.8851318359375 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 100.97 1 104.58 104.08 105.08 3.6084 0 0 0 0.38417 1 24379 24379 0.45452 0 1 10771 16293 6649 6655 13417 13417 -0.00543281922909955 GNPWCSLARRH 11 Unmodified _GNPWCSLARRH_ 0 0 0 MLT1C_dup13816|chr12:104556377-104556698:-|1.3781506335275298|0.0070378020355221|7.61|151.0|17|3|anti-sense MLT1C_dup13816|chr12:104556377-104556698:-|1.3781506335275298|0.0070378020355221|7.61|151.0|17|3|anti-sense MLT1C_dup13816|chr12:104556377-104556698:-|1.3781506335275298|0.0070378020355221|7.61|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_2 6 432.88525390625 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 100.64 1 104.38 103.88 104.88 3.7417 0 0 0 0.38417 1 23896 23896 0.45452 0 1 10772 16293 6649 6655 13418 13418 -0.00543281922909955 GNQPFVAQDRP 11 Unmodified _GNQPFVAQDRP_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MSMS UPN48_class_I_Rep_2 6 614.8095092773438 2 614.807094 1227.59963 NaN NaN NaN NaN NaN NaN NaN 46.492 1 50.242 49.742 50.742 3.7494 0 0 0 0.38417 1 9091 9091 0.96228 0.16864 1 + 10773 17588 6650 6656 13419 13419 -0.005061567561597258 GNQSTPSPMES 11 Unmodified _GNQSTPSPMES_ 0 0 0 REV__L1PREC2_dup496|chr1:235703772-235704795:-|2.087486477191667|0.0189312931181868|6.78|150.0|6|1|sense REV__L1PREC2_dup496|chr1:235703772-235704795:-|2.087486477191667|0.0189312931181868|6.78|150.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 567.7407836914062 2 567.740228 1133.4659 NaN NaN NaN NaN NaN NaN NaN 114.7 1 118.35 117.85 118.85 3.6511 0 0 0 0.38417 1 27281 27281 1.1933 0.39971 1 + 10774 30725 6651 6657 13420 13420 -0.09549183644003278 GNRFGWSRC 9 Unmodified _GNRFGWSRC_ 0 0 0 ENST00000580420.1_1_18:29523395-29523581:+|nuORF ENST00000580420.1_1_18:29523395-29523581:+|nuORF ENST00000580420.1_1_18:29523395-29523581:+|nuORF MSMS UPN47_class_I_Rep_3 4 541.7525024414062 2 541.751067 1081.48758 NaN NaN NaN NaN NaN NaN NaN 31.733 1 35.032 34.532 35.532 3.2991 0 0 0 0.39598 1 5446 5446 1.6526 0.85899 1 10775 7551 6652 6658 13421 13421 -0.04990289314127949 GNRKKLVE 8 Unmodified _GNRKKLVE_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS UPN48_class_I_Rep_1 5 474.7732238769531 2 472.287808 942.561064 0.10046 4.7445E-05 0.090671 4.2823E-05 0.19113 9.0268E-05 472.287871304699 86.034 1.0265 89.647 89.192 90.218 3.613 446 117 5 0 0 0 0.82752 1 20607 20607 2.3027 0 1 10592000 10776 1537 6653 6659 13422 13422 0.08748582400005489 GNRRHKKM 8 Unmodified _GNRRHKKM_ 0 0 0 REV__ENST00000392995.7_1_17:58734367-58740910:+|nuORF REV__ENST00000392995.7_1_17:58734367-58740910:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.7770385742188 2 513.790527 1025.5665 NaN NaN NaN NaN NaN NaN NaN 16.658 1 20.045 19.545 20.545 3.3864 0 0 0 0.40746 1 1103 1103 0.69038 0.088878 1 + 10777 20384 6654 6660 13423 13423 0.054739827108278405 GNRRRKRPRLR 11 Unmodified _GNRRRKRPRLR_ 0 0 0 REV__nc|ENSG00000133193|Q969W3|VCF1 REV__nc|ENSG00000133193|Q969W3|VCF1 MSMS UPN48_class_I_Rep_2 6 488.97747802734375 3 488.978414 1463.91341 NaN NaN NaN NaN NaN NaN NaN 63.415 1 66.888 66.388 67.388 3.4738 0 0 0 0.38417 1 14255 14255 0.40827 0.31342 1 + 10778 19053 6655 6661 13424 13424 0.2000127058772705 GNSHSNWDEM 10 Unmodified _GNSHSNWDEM_ 0 0 0 L1MA5A_dup1621|chr7:152073015-152074601:-|1.5330957987850713|0.0585923769213842|4.71|151.0|84|2|anti-sense L1MA5A_dup1621|chr7:152073015-152074601:-|1.5330957987850713|0.0585923769213842|4.71|151.0|84|2|anti-sense L1MA5A_dup1621|chr7:152073015-152074601:-|1.5330957987850713|0.0585923769213842|4.71|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_3 4 588.7236328125 2 588.722369 1175.43019 NaN NaN NaN NaN NaN NaN NaN 114.76 1 118.24 117.74 118.74 3.4802 0 0 0 0.53105 1 28195 28195 1.6526 0 1 10779 9938 6656 6662 13425 13425 -0.15051221101043666 GNSKSNPSHSI 11 Unmodified _GNSKSNPSHSI_ 0 0 0 REV__ENST00000426186.1_3_2:87098444-87121919:+|nuORF REV__ENST00000426186.1_3_2:87098444-87121919:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.276611328125 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 35.156 1 38.581 38.081 39.081 3.4253 0 0 0 0.38417 1 6446 6446 0.96228 0.16864 1 + 10780 22265 6657 6663 13426 13426 -0.021507225441837363 GNSPKSSAVFG 11 Unmodified _GNSPKSSAVFG_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MSMS UPN47_class_I_Rep_1 2 525.7635498046875 2 525.764363 1049.51417 NaN NaN NaN NaN NaN NaN NaN 54.353 1 57.855 57.355 58.355 3.5014 0 0 0 0.38417 1 12254 12254 4.5289 0.93237 1 + 10781 18603 6658 6664 13427 13427 -0.008603219417864238 GNSPKSSAVFG 11 Unmodified _GNSPKSSAVFG_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MSMS UPN47_class_I_Rep_1 2 525.7633056640625 2 525.764363 1049.51417 NaN NaN NaN NaN NaN NaN NaN 54.521 1 58.023 57.523 58.523 3.5014 0 0 0 0.38417 1 12304 12304 4.5289 1.6396 1 + 10782 18603 6658 6664 13428 13428 -0.008603219417864238 GNSPKSSAVFG 11 Unmodified _GNSPKSSAVFG_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS UPN47_class_I_Rep_2 3 525.7643432617188 2 525.764363 1049.51417 0.1779 9.3534E-05 -0.46768 -0.00024589 -0.28978 -0.00015236 525.7640702013713 54.678 0.57583 57.997 57.699 58.275 3.3187 36 26 2 0 0 0 0.54441 3 12423 12379;12423;12434 6.6304 2.686 1 70103 + 10783 18603 6658 6664 13429;13430;13431 13430 -0.008603219417864238 GNSPKSSAVFG 11 Unmodified _GNSPKSSAVFG_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7638549804688 2 525.764363 1049.51417 0.34738 0.00018264 -0.62585 -0.00032905 -0.27847 -0.00014641 525.7640139145452 54.872 0.67222 58.058 57.783 58.456 3.1856 65 38 2 0 0 0 0.62748 2 12466 12466;12505 4.5289 1.6396 1 102760 + 10784 18603 6658 6664 13432;13433 13432 -0.008603219417864238 GNTVKPCLY 9 Unmodified _GNTVKPCLY_ 0 0 0 AluSx3_dup30526|chr20:4000985-4001290:+|1.2429703810101969|0.0085875897103278|7.18|151.0|9|3|sense;AluSc8_dup2649|chr2:112651407-112651705:-|1.480825283535807|0.3645093708942854|2.02|151.0|2|1|sense;AluJr_dup47530|chr10:26555593-26555898:-|1.8159069453416647|0.0287815721343326|5.98|150.0|11|3|sense AluSx3_dup30526|chr20:4000985-4001290:+|1.2429703810101969|0.0085875897103278|7.18|151.0|9|3|sense AluSx3_dup30526|chr20:4000985-4001290:+|1.2429703810101969|0.0085875897103278|7.18|151.0|9|3|sense MSMS UPN48_class_I_Rep_1 5 497.4565734863281 2 497.754953 993.495352 NaN NaN NaN NaN NaN NaN NaN 30.733 1 34.275 33.775 34.775 3.542 0 0 0 0.39598 1 4453 4453 1.6526 0.96225 1 10785 154 6659 6665 13434 13434 -0.0016557483721726385 GNVELATSPSY 11 Unmodified _GNVELATSPSY_ 0 0 0 MER41-int_dup483|chr5:94040640-94042314:+|2.023338483075643|0.0526968405315972|5.26|151.0|58|3|sense MER41-int_dup483|chr5:94040640-94042314:+|2.023338483075643|0.0526968405315972|5.26|151.0|58|3|sense MER41-int_dup483|chr5:94040640-94042314:+|2.023338483075643|0.0526968405315972|5.26|151.0|58|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 569.7755737304688 2 569.274761 1136.53497 0.40317 0.00022951 -0.094757 -5.3943E-05 0.30841 0.00017557 569.2746152606892 52.479 0.36923 52.479 52.364 52.733 0 63 43 2 0 0 0 0.32209 1 11224 11224 13.615 1.3742 1 145920 10786 15963 6660 6666 13435 13435 -0.027837763527941206 GNVFNFSSFS 10 Unmodified _GNVFNFSSFS_ 0 0 0 L1PB3_dup2812|chr13:26285265-26287299:+|1.9602021019502816|0.0307777397928725|5.99|151.0|132|3|anti-sense L1PB3_dup2812|chr13:26285265-26287299:+|1.9602021019502816|0.0307777397928725|5.99|151.0|132|3|anti-sense L1PB3_dup2812|chr13:26285265-26287299:+|1.9602021019502816|0.0307777397928725|5.99|151.0|132|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.2509155273438 2 553.251089 1104.48762 NaN NaN NaN NaN NaN NaN NaN 60.785 1 63.95 63.45 64.45 3.1651 0 0 0 0.53105 1 14296 14296 2.7352 0.43246 1 10787 15279 6661 6667 13436 13436 -0.060440108331249576 GNVMPPDLLGF 11 Unmodified _GNVMPPDLLGF_ 0 0 0 L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|269|2|anti-sense L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|269|2|anti-sense L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|269|2|anti-sense MSMS UPN48_class_I_Rep_1 5 579.8108520507812 2 580.294442 1158.57433 NaN NaN NaN NaN NaN NaN NaN 53.256 1 56.775 56.275 57.275 3.5192 0 0 0 0.38417 1 11159 11159 1.3295 0.25807 1 10788 15061 6662 6668 13437 13437 0.0013865239707229193 GNYTMQKKE 9 Unmodified _GNYTMQKKE_ 0 0 0 REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|33|1|sense REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|33|1|sense MSMS UPN47_class_I_Rep_2 3 549.7821655273438 2 549.766049 1097.51754 NaN NaN NaN NaN NaN NaN NaN 35.326 1 38.752 38.252 39.252 3.4253 0 0 0 0.37692 1 6499 6499 6.2058 1.4498 1 + 10789 24919 6663 6669 13438 13438 -0.02731395159457861 GNYTSCYT 8 Unmodified _GNYTSCYT_ 0 0 0 L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|20|2|sense L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|20|2|sense L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 454.6758728027344 2 454.676368 907.338183 NaN NaN NaN NaN NaN NaN NaN 94.99 1 94.99 94.49 95.49 0 0 0 0 0.40753 1 23051 23051 0.6015 0 1 10790 12745 6664 6670 13439 13439 -0.11919279447420195 GNYYIRYYQ 9 Unmodified _GNYYIRYYQ_ 0 0 0 MER104_dup1427|chr11:43445190-43445357:+|1.0655789459652438|0.3596956348550572|1.57|151.0|9|2|anti-sense MER104_dup1427|chr11:43445190-43445357:+|1.0655789459652438|0.3596956348550572|1.57|151.0|9|2|anti-sense MER104_dup1427|chr11:43445190-43445357:+|1.0655789459652438|0.3596956348550572|1.57|151.0|9|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 619.7880859375 2 620.293288 1238.57202 0.31839 0.00019749 -2.3556 -0.0014611 -2.0372 -0.0012636 620.289728548804 51.298 0.44536 54.892 54.681 55.127 3.5932 28 21 2 0 0 0 0.12462 1 11383 11383 1.8442 0 1 96011 10791 15765 6665 6671 13440 13440 -0.037720600163765994 GPAERNGSVCC 11 Unmodified _GPAERNGSVCC_ 0 0 0 REV__Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|123|2|anti-sense REV__Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|123|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.730712890625 2 546.731683 1091.44881 NaN NaN NaN NaN NaN NaN NaN 118.26 1 121.86 121.36 122.36 3.6036 0 0 0 0.38417 1 29343 29343 0.96228 0.16864 1 + 10792 32358 6666 6672 13441 13441 -0.0932538273082173 GPAPKKVL 8 Unmodified _GPAPKKVL_ 0 0 0 REV__L1PA6_dup3707|chrX:80766638-80771565:+|1.6748875731716508|0.0528637176499735|4.99|150.0|203|2|anti-sense REV__L1PA6_dup3707|chrX:80766638-80771565:+|1.6748875731716508|0.0528637176499735|4.99|150.0|203|2|anti-sense MSMS UPN47_class_I_Rep_3 4 405.2733459472656 2 405.265813 808.517074 NaN NaN NaN NaN NaN NaN NaN 56.397 1 59.569 59.069 60.069 3.1721 0 0 0 0.40738 1 12961 12961 0.79363 0.79363 1 + 10793 29890 6667 6673 13442 13442 0.1051559797366508 GPAPRRTA 8 Unmodified _GPAPRRTA_ 0 0 0 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 MULTI-MSMS UPN46_class_I_Rep_3 1 413.2380676269531 2 413.238119 824.461684 0.070336 2.9065E-05 -0.096696 -3.9958E-05 -0.02636 -1.0893E-05 413.2380066962629 84.257 0.89872 84.257 83.866 84.765 0 225 90 4 0 0 0 0.82752 5 20049 19978;20013;20049;20081;20118 8.5933 0 1 3935400 10794 3778 6668 6674 13443;13444;13445;13446;13447 13445 0.04243184505901354 GPAPRRTA 8 Unmodified _GPAPRRTA_ 0 0 0 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 MULTI-MSMS UPN47_class_I_Rep_1 2 413.23809814453125 2 413.238119 824.461684 0.016667 6.8872E-06 -0.012248 -5.0614E-06 0.0044184 1.8259E-06 413.23805988265553 80.999 0.78151 84.487 84.166 84.947 3.4874 203 81 3 0 0 0 0.82752 2 20177 20177;20213 4.756 0 1 805970 10795 3778 6668 6674 13448;13449 13448 0.04243184505901354 GPAPRRTA 8 Unmodified _GPAPRRTA_ 0 0 0 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 MULTI-MSMS UPN48_class_I_Rep_1 5 413.238037109375 2 413.238119 824.461684 -0.11731 -4.8478E-05 0.18116 7.4863E-05 0.06385 2.6385E-05 413.23812445444753 80.822 0.7331 84.385 84.123 84.856 3.5624 195 96 3 0 0 0 0.82752 3 19231 19231;19260;19292 4.756 0 1 1240900 10796 3778 6668 6674 13450;13451;13452 13450 0.04243184505901354 GPAPRRTA 8 Unmodified _GPAPRRTA_ 0 0 0 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 MULTI-MSMS UPN48_class_I_Rep_2 6 413.2380676269531 2 413.238119 824.461684 0.078208 3.2319E-05 -0.081309 -3.36E-05 -0.0031006 -1.2813E-06 413.23800557911574 80.656 0.79811 84.3 84.077 84.875 3.6446 248 108 3 0 0 0 0.82752 3 19140 19114;19140;19169 8.5933 0 1 1737600 10797 3778 6668 6674 13453;13454;13455 13454 0.04243184505901354 GPAPRRTA 8 Unmodified _GPAPRRTA_ 0 0 0 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 ENSG00000157782|ENST00000316803|CABP1 MULTI-MSMS UPN48_class_I_Rep_3 7 413.238037109375 2 413.238119 824.461684 0.13107 5.4162E-05 -0.075871 -3.1353E-05 0.055195 2.2809E-05 413.23800434508775 80.767 0.84763 84.43 84.088 84.936 3.6635 224 111 3 0 0 0 0.82752 4 19082 19055;19082;19114;19148 8.5933 0 1 1394800 10798 3778 6668 6674 13456;13457;13458;13459 13457 0.04243184505901354 GPAPSLRQGQT 11 Unmodified _GPAPSLRQGQT_ 0 0 0 ENST00000435520.5_2_20:25176475-25177782:+|nuORF ENST00000435520.5_2_20:25176475-25177782:+|nuORF ENST00000435520.5_2_20:25176475-25177782:+|nuORF MSMS UPN48_class_I_Rep_2 6 556.2965087890625 2 556.296362 1110.57817 NaN NaN NaN NaN NaN NaN NaN 86.299 1 90.016 89.516 90.516 3.7171 0 0 0 0.38417 1 20548 20548 1.1933 0.50296 1 10799 6746 6669 6675 13460 13460 0.027304582151373324 GPAPSLRQGQT 11 Unmodified _GPAPSLRQGQT_ 0 0 0 ENST00000435520.5_2_20:25176475-25177782:+|nuORF ENST00000435520.5_2_20:25176475-25177782:+|nuORF ENST00000435520.5_2_20:25176475-25177782:+|nuORF MSMS UPN48_class_I_Rep_3 7 556.29638671875 2 556.296362 1110.57817 NaN NaN NaN NaN NaN NaN NaN 82.194 1 85.879 85.379 86.379 3.685 0 0 0 0.38417 1 19476 19476 1.1933 0.39971 1 10800 6746 6669 6675 13461 13461 0.027304582151373324 GPDFYLFY 8 Unmodified _GPDFYLFY_ 0 0 0 REV__L1MC4_dup21374|chr17:5370260-5370762:-|1.1406172692733842|0.3233768785275352|1.82|151.0|25|1|anti-sense REV__L1MC4_dup21374|chr17:5370260-5370762:-|1.1406172692733842|0.3233768785275352|1.82|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_2 6 511.2350158691406 2 511.236919 1020.45928 NaN NaN NaN NaN NaN NaN NaN 58.069 1 61.583 61.083 62.083 3.5142 0 0 0 0.36148 1 12615 12615 19.439 5.5329 1 + 10801 26873 6670 6676 13462 13462 -0.050127087424243655 GPDHFPVLVY 10 Unmodified _GPDHFPVLVY_ 0 0 0 REV__nc|ENSG00000204396|Q9Y334-2|VWA7 REV__nc|ENSG00000204396|Q9Y334-2|VWA7 MSMS UPN48_class_I_Rep_3 7 572.2957763671875 2 572.295299 1142.57605 NaN NaN NaN NaN NaN NaN NaN 97.912 1 101.81 101.31 102.31 3.9022 0 0 0 0.53105 1 23197 23197 1.6526 0 1 + 10802 21191 6671 6677 13463 13463 0.010460294773338319 GPFEKHREY 9 Unmodified _GPFEKHREY_ 0 0 0 REV__LTR50_dup1609|chr10:823442-823617:+|1.6290786535661002|0.339398229960111|2.26|151.0|9|1|anti-sense REV__LTR50_dup1609|chr10:823442-823617:+|1.6290786535661002|0.339398229960111|2.26|151.0|9|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.7853393554688 2 581.78563 1161.55671 0.47797 0.00027808 0.2869 0.00016692 0.76488 0.000445 581.7858113929337 60.402 0.42812 63.919 63.548 63.976 3.5169 62 36 2 0 0 0 0.47197 1 13192 13192 3.5965 0.70727 1 105320 + 10803 30962 6672 6678 13464 13464 -0.017609268135629463 GPFVVKHV 8 Unmodified _GPFVVKHV_ 0 0 0 ENST00000344111.3_1_7:1007687-1008335:-|nuORF ENST00000344111.3_1_7:1007687-1008335:-|nuORF ENST00000344111.3_1_7:1007687-1008335:-|nuORF MSMS UPN46_class_I_Rep_3 1 441.7632751464844 2 441.763438 881.512323 NaN NaN NaN NaN NaN NaN NaN 45.959 1 45.959 45.459 46.459 0 0 0 0 0.40738 1 9386 9386 0.79363 0 1 10804 6249 6673 6679 13465 13465 0.06682713830889497 GPGGAFVRV 9 Unmodified _GPGGAFVRV_ 0 0 0 ENSG00000181404|ENST00000696149|WASHC1 ENSG00000181404|ENST00000696149|WASHC1 ENSG00000181404|ENST00000696149|WASHC1 MSMS UPN47_class_I_Rep_3 4 430.2560729980469 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 109.56 1 113.09 112.59 113.59 3.5347 0 0 0 0.38478 1 26920 26920 4.3292 1.44 1 10805 4918 6674 6680 13466 13466 0.03628952791427764 GPGGWGGTVM 10 Unmodified _GPGGWGGTVM_ 0 0 0 REV__ENSG00000160113|ENST00000291442|NR2F6 REV__ENSG00000160113|ENST00000291442|NR2F6 MULTI-MSMS UPN46_class_I_Rep_3 1 459.71038818359375 2 459.710545 917.406537 0.21262 9.7746E-05 -0.8171 -0.00037563 -0.60448 -0.00027788 459.7104407328029 100.76 0.34665 100.76 100.71 101.05 0 99 37 6 0 0 0 0.56033 1 24589 24589 3.5965 0.70727 1 510500 + 10806 19878 6675 6681 13467 13467 -0.055469900768684965 GPGGWGGTVM 10 Unmodified _GPGGWGGTVM_ 0 0 0 REV__ENSG00000160113|ENST00000291442|NR2F6 REV__ENSG00000160113|ENST00000291442|NR2F6 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 459.710545 917.406537 0.21262 9.7746E-05 -0.8171 -0.00037563 -0.60448 -0.00027788 459.7104407328029 100.76 0.34665 100.76 100.71 101.05 0 -0.018501 -0.00061204 NaN 3.5965 99 37 6 NaN NaN NaN NaN 0 NaN NaN 0 510500 + 10807 19878 6675 6681 -0.055469900768684965 GPGGWGGTVM 10 Unmodified _GPGGWGGTVM_ 0 0 0 REV__ENSG00000160113|ENST00000291442|NR2F6 REV__ENSG00000160113|ENST00000291442|NR2F6 MULTI-MATCH UPN48_class_I_Rep_1 5 2 459.710545 917.406537 0.040494 1.8616E-05 0.092093 4.2336E-05 0.13259 6.0952E-05 459.7106127684144 97.174 0.21542 100.78 100.75 100.96 3.6088 0.0064371 0.0002239 NaN 3.5965 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 63262 + 10808 19878 6675 6681 -0.055469900768684965 GPGLVVLIL 9 Unmodified _GPGLVVLIL_ 0 0 0 REV__L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|167|2|anti-sense REV__L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|167|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29791259765625 2 440.796946 879.57934 -0.026229 -1.1562E-05 2.7143 0.0011964 2.688 0.0011849 440.7994104741919 53.081 1.8161 56.609 55.979 57.795 3.5278 156 109 2 0 0 0 0.50015 1 11832 11832 0.6015 0 1 102820 + 10809 29241 6676 6682 13468 13468 0.1347332432201256 GPHDLFEEYKW 11 Unmodified _GPHDLFEEYKW_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MULTI-SECPEP UPN47_class_I_Rep_1 2 474.89520263671875 3 474.222582 1419.64592 -0.30782 -0.00014597 1.2452 0.00059051 0.93739 0.00044453 474.5577482363967 36.963 0.19104 40.632 40.553 40.744 3.6692 21 15 2 0 0 0 22.551 1 6951 6951 3.8459 1.0026 1 70216 + 10810 21192 6677 6683 13469 13469 -0.047121366447299806 GPHDLFEEYKW 11 Unmodified _GPHDLFEEYKW_ 0 0 0 REV__nc|ENSG00000204406|Q9P267|MBD5 REV__nc|ENSG00000204406|Q9P267|MBD5 MULTI-SECPEP UPN47_class_I_Rep_1 2 474.8951110839844 3 474.222582 1419.64592 -0.30852 -0.00014631 1.9858 0.00094173 1.6773 0.00079542 474.2234302037474 36.746 0.24191 40.416 40.364 40.606 3.6692 28 20 2 0 0 0 22.551 1 6913 6913 7.0371 2.6309 1 57162 + 10811 21192 6677 6683 13470 13470 -0.047121366447299806 GPHHLLSLI 9 Unmodified _GPHHLLSLI_ 0 0 0 REV__ENST00000397265.7_1_12:674551-719530:-|nuORF REV__ENST00000397265.7_1_12:674551-719530:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 493.7922668457031 2 493.792727 985.5709 0.1866 9.2142E-05 -1.373 -0.00067797 -1.1864 -0.00058583 493.79191632431065 82.85 0.32574 86.437 86.18 86.506 3.5871 62 35 3 0 0 0 0.32219 2 19746 19746;19815 12.532 1.7076 1 303080 + 10812 22130 6678 6684 13471;13472 13471 0.07753770405395244 GPHHLLSLI 9 Unmodified _GPHHLLSLI_ 0 0 0 REV__ENST00000397265.7_1_12:674551-719530:-|nuORF REV__ENST00000397265.7_1_12:674551-719530:-|nuORF MSMS UPN48_class_I_Rep_2 6 493.79150390625 2 493.792727 985.5709 NaN NaN NaN NaN NaN NaN NaN 83.993 1 87.674 87.174 88.174 3.6814 0 0 0 0.28335 1 19983 19983 11.64 0.81637 1 + 10813 22130 6678 6684 13473 13473 0.07753770405395244 GPHHLLSLI 9 Unmodified _GPHHLLSLI_ 0 0 0 REV__ENST00000397265.7_1_12:674551-719530:-|nuORF REV__ENST00000397265.7_1_12:674551-719530:-|nuORF MSMS UPN48_class_I_Rep_3 7 493.7918701171875 2 493.792727 985.5709 NaN NaN NaN NaN NaN NaN NaN 84.032 1 87.76 87.26 88.26 3.7281 0 0 0 0.28335 1 19936 19936 11.64 0.81637 1 + 10814 22130 6678 6684 13474 13474 0.07753770405395244 GPIDHVQITI 10 Unmodified _GPIDHVQITI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MULTI-MSMS UPN48_class_I_Rep_1 5 546.8056640625 2 546.806031 1091.59751 0.4386 0.00023983 -0.11744 -6.4219E-05 0.32116 0.00017561 546.8061046760699 46.459 0.55463 49.979 49.754 50.308 3.5192 42 34 2 0 0 0 0.51963 1 9034 9034 9.544 0.16085 1 151770 + 10815 19771 6679 6685 13475 13475 0.05537414506034111 GPIVPGNTR 9 Unmodified _GPIVPGNTR_ 0 0 0 REV__ENST00000430372.1_2_7:134853735-134855458:-|nuORF REV__ENST00000430372.1_2_7:134853735-134855458:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 455.7586364746094 2 455.758884 909.503215 -0.49453 -0.00022539 0.018087 8.2433E-06 -0.47644 -0.00021714 455.758745653657 27.226 0.87947 30.725 30.248 31.127 3.4986 111 75 2 0 0 0 0.48846 1 3980 3980 1.8442 1.8442 1 120760 + 10816 22257 6680 6686 13476 13476 0.04484320474557535 GPKAGGDRRS 10 Unmodified _GPKAGGDRRS_ 0 0 0 REV__ENSG00000066044.15,ELAVL1,chr19,-,I4.1,7973879,7981082|44|14.03|2|intron REV__ENSG00000066044.15,ELAVL1,chr19,-,I4.1,7973879,7981082|44|14.03|2|intron MSMS UPN48_class_I_Rep_2 6 500.7794189453125 2 500.767771 999.52099 NaN NaN NaN NaN NaN NaN NaN 32.758 1 36.407 35.907 36.907 3.6497 0 0 0 0.53105 1 5094 5094 1.3295 0.5359 1 + 10817 17762 6681 6687 13477 13477 0.021210357294194182 GPKELELARPR 11 Unmodified _GPKELELARPR_ 0 0 0 REV__ENST00000478850.5_1_9:99614286-99616635:-|nuORF REV__ENST00000478850.5_1_9:99614286-99616635:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 633.369384765625 2 633.369861 1264.72517 0.72058 0.00045639 -1.406 -0.00089052 -0.68543 -0.00043413 633.3687789266662 90.76 0.24706 90.76 90.741 90.988 0 33 24 3 0 0 0 0.67113 1 21928 21928 0.30703 0 1 623800 + 10818 22552 6682 6688 13478 13478 0.1033955510006308 GPKELELARPR 11 Unmodified _GPKELELARPR_ 0 0 0 REV__ENST00000478850.5_1_9:99614286-99616635:-|nuORF REV__ENST00000478850.5_1_9:99614286-99616635:-|nuORF MSMS UPN46_class_I_Rep_3 1 422.5819396972656 3 422.582333 1264.72517 NaN NaN NaN NaN NaN NaN NaN 92.832 1 92.832 92.332 93.332 0 0 0 0 0.38417 1 22480 22480 2.2527 0.51045 1 + 10819 22552 6682 6688 13479 13479 0.1033955510006308 GPKGAVGRAG 10 Unmodified _GPKGAVGRAG_ 0 0 0 REV__nc|ENSG00000060718|P12107-4|COL11A1 REV__nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN46_class_I_Rep_3 1 435.25103759765625 2 435.251226 868.487899 0.10851 4.7229E-05 -0.46453 -0.00020219 -0.35602 -0.00015496 435.25095179379576 72.973 0.4216 72.973 72.686 73.107 0 80 42 2 0 0 0 0.54822 1 16886 16886 5.7319 0.97584 1 224000 + 10820 17724 6683 6689 13480 13480 0.04839453677379879 GPKGAVGRAG 10 Unmodified _GPKGAVGRAG_ 0 0 0 REV__nc|ENSG00000060718|P12107-4|COL11A1 REV__nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN47_class_I_Rep_2 3 435.2508850097656 2 435.251226 868.487899 -0.39606 -0.00017239 -0.24544 -0.00010683 -0.6415 -0.00027922 435.25099104155055 70.691 1.8543 73.974 72.963 74.817 3.2828 275 170 2 0 0 0 0.56333 1 17108 17108 1.4819 0.68827 1 254760 + 10821 17724 6683 6689 13481 13481 0.04839453677379879 GPKGAVGRAG 10 Unmodified _GPKGAVGRAG_ 0 0 0 REV__nc|ENSG00000060718|P12107-4|COL11A1 REV__nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN48_class_I_Rep_2 6 435.2512512207031 2 435.251226 868.487899 0.096761 4.2115E-05 -0.58615 -0.00025512 -0.48939 -0.00021301 435.2507806894506 70.266 1.3953 73.802 72.938 74.333 3.5359 222 129 3 0 0 0 0.56333 1 16260 16260 1.4819 0.68827 1 183420 + 10822 17724 6683 6689 13482 13482 0.04839453677379879 GPKGAVGRAG 10 Unmodified _GPKGAVGRAG_ 0 0 0 REV__nc|ENSG00000060718|P12107-4|COL11A1 REV__nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.251226 868.487899 -0.40309 -0.00017544 -0.99925 -0.00043493 -1.4023 -0.00061037 435.2504173728423 69.651 0.073036 72.855 72.802 72.875 3.2044 -0.058853 -0.00045279 NaN 5.7319 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 42133 + 10823 17724 6683 6689 0.04839453677379879 GPKGKKKNG 9 Unmodified _GPKGKKKNG_ 0 0 0 nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2 nc|ENSG00000172432|Q9BX10-4|GTPBP2 nc|ENSG00000172432|Q9BX10-4|GTPBP2 MSMS UPN48_class_I_Rep_1 5 457.2821044921875 2 457.282526 912.550499 NaN NaN NaN NaN NaN NaN NaN 91.961 1 95.587 95.087 96.087 3.626 0 0 0 0.39518 1 22104 22104 1.8442 1.0506 1 10824 4574 6684 6690 13483 13483 0.09072599745559273 GPKGVRVNS 9 Unmodified _GPKGVRVNS_ 0 0 0 REV__L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|31|3|sense REV__L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.2640380859375 2 457.264333 912.514114 0.073621 3.3664E-05 0.075283 3.4424E-05 0.1489 6.8088E-05 457.264245092214 72.821 1.6651 76.294 75.47 77.135 3.4732 273 145 3 0 0 0 0.47197 1 17230 17230 3.5965 0.31518 1 285570 + 10825 26885 6685 6691 13484 13484 0.05435722848858404 GPKGVRVNS 9 Unmodified _GPKGVRVNS_ 0 0 0 REV__L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|31|3|sense REV__L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.26416015625 2 457.264333 912.514114 0.23289 0.00010649 -0.1778 -8.1302E-05 0.055086 2.5189E-05 457.26412247260816 72.237 1.4525 75.763 75.254 76.706 3.5266 245 134 3 0 0 0 0.47197 1 16786 16786 3.5965 0.31518 1 287280 + 10826 26885 6685 6691 13485 13485 0.05435722848858404 GPKPVPVLPTD 11 Unmodified _GPKPVPVLPTD_ 0 0 0 ENST00000221486.4_1_19:12924200-12924326:+|nuORF ENST00000221486.4_1_19:12924200-12924326:+|nuORF ENST00000221486.4_1_19:12924200-12924326:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 560.32373046875 2 560.324057 1118.63356 0.43685 0.00024478 -2.1877 -0.0012258 -1.7509 -0.00098106 560.3229998739986 86.806 0.13939 86.806 86.765 86.905 0 15 12 2 0 0 0 0.67264 1 20790 20790 1.1933 0.50296 1 134200 10827 5871 6686 6692 13486 13486 0.07898871682891695 GPKQLQIRGH 10 Unmodified _GPKQLQIRGH_ 0 0 0 REV__L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|45|3|sense REV__L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|45|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3306884765625 2 567.330539 1132.64652 0.43501 0.00024679 0.02966 1.6827E-05 0.46467 0.00026362 567.3305113382103 81.93 0.44754 85.505 85.318 85.766 3.5753 85 54 2 0 0 0 0.56333 1 19553 19553 1.4819 0 1 125380 + 10828 28919 6687 6693 13487 13487 0.0855074758567298 GPKRGRVG 8 Unmodified _GPKRGRVG_ 0 0 0 REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 413.7539367675781 2 413.753936 825.493319 -0.009744 -4.0316E-06 0.09916 4.1028E-05 0.089416 3.6996E-05 413.75386555264834 76.633 1.1967 80.048 79.526 80.723 3.4149 225 106 3 0 0 0 0.82752 1 18917 18917 5.2307 2.6532 1 508720 + 10829 21583 6688 6694 13488 13488 0.07359177259854732 GPKRGRVG 8 Unmodified _GPKRGRVG_ 0 0 0 REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 413.753936 825.493319 0.058487 2.4199E-05 -0.015967 -6.6063E-06 0.04252 1.7593E-05 413.75374755746725 79.836 0.59975 79.836 79.669 80.269 0 -0.12751 -1.0079E-05 NaN 5.2307 80 56 2 NaN NaN NaN NaN 0 NaN NaN 0 269100 + 10830 21583 6688 6694 0.07359177259854732 GPKRGRVG 8 Unmodified _GPKRGRVG_ 0 0 0 REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF REV__ENST00000264824.4_1_19:13212008-13213661:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 413.753936 825.493319 0.14126 5.8448E-05 -0.06611 -2.7353E-05 0.075153 3.1095E-05 413.75378218232566 76.424 1.0233 80.007 79.391 80.414 3.5831 0.043519 -5.1573E-05 NaN 5.2307 266 116 3 NaN NaN NaN NaN 0 NaN NaN 0 777300 + 10831 21583 6688 6694 0.07359177259854732 GPKSHPRPR 9 Unmodified _GPKSHPRPR_ 0 0 0 REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|23|1|sense REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|23|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.2958374023438 2 516.296499 1030.57845 0.31667 0.0001635 -1.7089 -0.0008823 -1.3922 -0.0007188 516.2956937965047 83.271 0.14359 83.271 83.206 83.349 0 15 13 2 0 0 0 0.49026 1 19764 19764 1.6526 0.85899 1 66821 + 10832 23847 6689 6695 13489 13489 0.06437922725649514 GPKSTMLRA 9 Unmodified _GPKSTMLRA_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MSMS UPN48_class_I_Rep_3 7 480.7696228027344 2 480.768394 959.522236 NaN NaN NaN NaN NaN NaN NaN 23.695 1 27.464 26.964 27.964 3.769 0 0 0 0.39598 1 2639 2639 1.6526 0.85899 1 10833 2955 6690 6696 13490 13490 0.040855337739458264 GPKVQSARA 9 Unmodified _GPKVQSARA_ 0 0 0 REV__ENSG00000150594|ENST00000280155|ADRA2A REV__ENSG00000150594|ENST00000280155|ADRA2A MULTI-MSMS UPN48_class_I_Rep_2 6 457.2643127441406 2 457.264333 912.514114 0.16391 7.4952E-05 -0.29669 -0.00013567 -0.13278 -6.0715E-05 457.2642686973655 73.89 0.76614 77.467 77.228 77.994 3.5779 135 86 2 0 0 0 0.47493 1 17406 17406 3.2813 0 1 168960 + 10834 19634 6691 6697 13491 13491 0.054357228488470355 GPKVQSARA 9 Unmodified _GPKVQSARA_ 0 0 0 REV__ENSG00000150594|ENST00000280155|ADRA2A REV__ENSG00000150594|ENST00000280155|ADRA2A MSMS UPN48_class_I_Rep_3 7 457.2641296386719 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 74.039 1 77.589 77.089 78.089 3.5505 0 0 0 0.38916 1 17342 17342 3.2813 0 1 + 10835 19634 6691 6697 13492 13492 0.054357228488470355 GPKWDGKN 8 Unmodified _GPKWDGKN_ 0 0 0 REV__MER50C_dup13|chr2:216114477-216115267:+|1.009167804325468|0.1303985614156744|2.95|151.0|23|3|sense REV__MER50C_dup13|chr2:216114477-216115267:+|1.009167804325468|0.1303985614156744|2.95|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 451.2313537597656 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 107.18 1 110.72 110.22 111.22 3.5382 0 0 0 0.4044 1 26167 26167 4.756 0 1 + 10836 31381 6692 6698 13493 13493 -0.008839414508543086 GPLMWYTL 8 Unmodified _GPLMWYTL_ 0 0 0 L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.751220703125 2 490.749139 979.483725 NaN NaN NaN NaN NaN NaN NaN 24.473 1 28.203 27.703 28.703 3.7298 0 0 0 0.40364 1 3204 3204 5.7604 1.0044 1 10837 15252 6693 6699 13494 13494 -0.006837718605538612 GPLMWYTL 8 Unmodified _GPLMWYTL_ 0 0 0 L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.749755859375 2 490.749139 979.483725 NaN NaN NaN NaN NaN NaN NaN 24.561 1 28.291 27.791 28.791 3.7298 0 0 0 0.40364 1 3231 3231 5.7604 1.4312 1 10838 15252 6693 6699 13495 13495 -0.006837718605538612 GPLMWYTL 8 Unmodified _GPLMWYTL_ 0 0 0 L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|112|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.75177001953125 2 490.749139 979.483725 NaN NaN NaN NaN NaN NaN NaN 24.595 1 28.328 27.828 28.828 3.733 0 0 0 0.40364 1 3242 3242 5.7604 1.4312 1 10839 15252 6693 6699 13496 13496 -0.006837718605538612 GPMPGRKK 8 Unmodified _GPMPGRKK_ 0 0 0 REV__ENST00000426279.1_1_X:44168653-44169127:-|nuORF REV__ENST00000426279.1_1_X:44168653-44169127:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 435.2511291503906 2 435.752547 869.490542 -0.0034244 -1.4922E-06 0.44339 0.00019321 0.43997 0.00019172 435.75294557200806 69.094 0.065231 72.462 72.439 72.505 3.3678 6 3 2 0 0 0 0.72333 1 16731 16731 0.69038 0.69038 1 107550 + 10840 22267 6694 6700 13497 13497 0.05057585810675391 GPMPGRKK 8 Unmodified _GPMPGRKK_ 0 0 0 REV__ENST00000426279.1_1_X:44168653-44169127:-|nuORF REV__ENST00000426279.1_1_X:44168653-44169127:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.752547 869.490542 -0.40011 -0.00017435 0.66288 0.00028885 0.26277 0.0001145 435.752860594956 69.307 0.063049 72.583 72.544 72.608 3.2761 0.060548 0.00014076 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 15220 + 10841 22267 6694 6700 0.05057585810675391 GPPPKQFLNVF 11 Unmodified _GPPPKQFLNVF_ 0 0 0 REV__L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|252|3|anti-sense REV__L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|252|3|anti-sense MSMS UPN46_class_I_Rep_3 1 622.34716796875 2 622.345323 1242.67609 NaN NaN NaN NaN NaN NaN NaN 91.339 1 91.339 90.839 91.839 0 0 0 0 0.38417 1 22059 22059 1.3295 0.80477 1 + 10842 29973 6695 6701 13498 13498 0.06446266811144596 GPPRVLQPFL 10 Unmodified _GPPRVLQPFL_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS UPN46_class_I_Rep_3 1 562.3346557617188 2 562.334759 1122.65496 0.4452 0.00025035 0.20305 0.00011418 0.64825 0.00036454 562.3345963792227 109.69 0.56599 109.69 109.56 110.13 0 129 46 3 0 0 0 0.52083 2 26986 26986;27029 9.3831 1.7742 1 8916000 10843 4087 6696 6702 13499;13500 13499 0.09854301502286944 GPPSLKNVR 9 Unmodified _GPPSLKNVR_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-SECPEP UPN47_class_I_Rep_3 4 484.26519775390625 2 484.287808 966.561064 -0.34035 -0.00016483 -0.78612 -0.00038071 -1.1265 -0.00054553 484.2877629860322 40.319 0.30437 43.556 43.385 43.689 3.2372 18 16 2 0 0 0 0.12462 1 8031 8031 1.8442 0.19162 1 30300 + 10844 19935 6697 6703 13501 13501 0.07644582399996125 GPPSLKNVR 9 Unmodified _GPPSLKNVR_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MATCH UPN47_class_I_Rep_1 2 2 484.287808 966.561064 -0.27544 -0.00013339 -0.74855 -0.00036251 -1.024 -0.0004959 484.2879229253043 39.834 0.068985 43.5 43.469 43.538 3.6668 -0.13193 0.00013705 NaN 1.8442 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 30747 + 10845 19935 6697 6703 0.07644582399996125 GPPSLKNVR 9 Unmodified _GPPSLKNVR_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 484.287808 966.561064 0.14185 6.8695E-05 -2.0662 -0.0010006 -1.9243 -0.00093193 484.28769049713003 40.19 0.068779 43.84 43.783 43.851 3.6509 0.20821 -0.0011392 NaN 1.8442 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 40045 + 10846 19935 6697 6703 0.07644582399996125 GPPSVLCLVMR 11 Unmodified _GPPSVLCLVMR_ 0 0 0 REV__MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|49|3|anti-sense REV__MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 586.31884765625 2 586.319937 1170.62532 0.48159 0.00028237 -0.62874 -0.00036864 -0.14715 -8.6276E-05 586.319356545959 99.568 1.1909 103.33 102.89 104.08 3.7575 212 161 2 0 0 0 0.65271 1 23666 23666 2.9952 0 1 235690 + 10847 17451 6698 6704 13502 13502 0.0468327817025056 GPQKTKRK 8 Unmodified _GPQKTKRK_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MSMS UPN46_class_I_Rep_3 1 471.7946472167969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 112.5 1 112.5 112 113 0 0 0 0 0.40738 1 27774 27774 0.79363 0 1 10848 1375 6699 6705 13503 13503 0.1039228863688777 GPRGIGVCCV 10 Unmodified _GPRGIGVCCV_ 0 0 0 REV__ENST00000592881.1_1_19:56146387-56146453:+|nuORF REV__ENST00000592881.1_1_19:56146387-56146453:+|nuORF MSMS UPN46_class_I_Rep_3 1 480.74072265625 2 480.741322 959.468092 NaN NaN NaN NaN NaN NaN NaN 112.17 1 112.17 111.67 112.67 0 0 0 0 0.53105 1 27687 27687 1.6526 0.85899 1 + 10849 23180 6700 6706 13504 13504 -0.013263816492553815 GPRTGHPTRLG 11 Unmodified _GPRTGHPTRLG_ 0 0 0 ENST00000426250.3_1_12:72666801-72667203:-|nuORF ENST00000426250.3_1_12:72666801-72667203:-|nuORF ENST00000426250.3_1_12:72666801-72667203:-|nuORF MSMS UPN48_class_I_Rep_1 5 574.817626953125 2 574.817796 1147.62104 NaN NaN NaN NaN NaN NaN NaN 48.042 1 51.564 51.064 52.064 3.5219 0 0 0 0.38417 1 9559 9559 0.96228 0 1 10850 6703 6701 6707 13505 13505 0.053132730632114544 GPSEEVWPGCT 11 Unmodified _GPSEEVWPGCT_ 0 0 0 MLT1C_dup140|chr1:6057572-6057868:-|1.226639624095172|0.0059161676666949|7.7|151.0|4|3|sense MLT1C_dup140|chr1:6057572-6057868:-|1.226639624095172|0.0059161676666949|7.7|151.0|4|3|sense MLT1C_dup140|chr1:6057572-6057868:-|1.226639624095172|0.0059161676666949|7.7|151.0|4|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.7498779296875 2 581.247689 1160.48082 0.36055 0.00020957 0.023878 1.3879E-05 0.38442 0.00022345 581.2475149974682 57.56 0.71696 60.728 60.509 61.226 3.1681 102 56 2 0 0 0 0.65559 1 13424 13424 2.7352 0.67545 1 239630 10851 16295 6702 6708 13506 13506 -0.09299691776004693 GPSPAGRART 10 Unmodified _GPSPAGRART_ 0 0 0 REV__nc|ENSG00000130669|O96013-3|PAK4 REV__nc|ENSG00000130669|O96013-3|PAK4 MSMS UPN48_class_I_Rep_3 7 485.26763916015625 2 485.264865 968.515176 NaN NaN NaN NaN NaN NaN NaN 95.755 1 99.663 99.163 100.16 3.9084 0 0 0 0.53105 1 22695 22695 3.5965 1.5367 1 + 10852 18946 6703 6709 13507 13507 0.029659372177434307 GPVLRVQRLVE 11 Unmodified _GPVLRVQRLVE_ 0 0 0 REV__ENSG00000204913|ENST00000377924|LRRC3C REV__ENSG00000204913|ENST00000377924|LRRC3C MULTI-MSMS UPN48_class_I_Rep_3 7 633.3870239257812 2 633.388054 1264.76155 0.63946 0.00040503 -1.3143 -0.00083249 -0.67488 -0.00042746 633.3870418227957 85.933 0.30302 89.703 89.479 89.782 3.7701 49 34 2 0 0 0 0.65891 1 20375 20375 5.2969 2.0156 1 140280 + 10853 21210 6704 6710 13508 13508 0.13976431996775318 GPVNLLTRL 9 Unmodified _GPVNLLTRL_ 0 0 0 REV__L1ME1_dup22489|chr12:57366987-57367293:-|1.3180480851519083|0.0076967105551011|7.42|151.0|19|1|anti-sense REV__L1ME1_dup22489|chr12:57366987-57367293:-|1.3180480851519083|0.0076967105551011|7.42|151.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 491.7940979003906 2 491.805834 981.597115 NaN NaN NaN NaN NaN NaN NaN 81.052 1 81.052 80.552 81.552 0 0 0 0 0.39036 1 19121 19121 2.9952 0.41776 1 + 10854 27680 6705 6711 13509 13509 0.10558039576824285 GPVPAGPGR 9 Unmodified _GPVPAGPGR_ 0 0 0 REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF MSMS UPN47_class_I_Rep_3 4 404.22735595703125 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 105.21 1 108.74 108.24 109.24 3.5308 0 0 0 0.38478 1 25770 25770 4.3292 1.7518 1 + 10855 22059 6706 6712 13510 13510 0.02892379757327035 GPVPYLRRNH 10 Unmodified _GPVPYLRRNH_ 0 0 0 REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|69|2|sense REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|69|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 604.8352661132812 2 604.835988 1207.65742 0.071403 4.3187E-05 -1.0762 -0.00065095 -1.0048 -0.00060777 604.8353104511474 43.217 0.32787 46.904 46.734 47.062 3.6875 34 21 2 0 0 0 0.56309 1 8849 8849 1.6526 0.32309 1 54989 + 10856 29903 6707 6713 13511 13511 0.06190149959957125 GPVVPPKPS 9 Unmodified _GPVVPPKPS_ 0 0 0 ENST00000467136.5_1_X:30854677-30861194:-|nuORF;ENSG00000157625|ENST00000288422|TAB3 ENST00000467136.5_1_X:30854677-30861194:-|nuORF ENST00000467136.5_1_X:30854677-30861194:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 438.769287109375 2 439.260728 876.506903 0.15771 6.9274E-05 2.1676 0.00095214 2.3253 0.0010214 439.26196452878736 109.1 0.093536 109.1 109.04 109.13 0 5 3 2 0 0 0 0.11598 1 26750 26750 11.64 0 1 1149200 10857 3772 6708 6714 13512 13512 0.06370990248422004 GPVVPPKPS 9 Unmodified _GPVVPPKPS_ 0 0 0 ENST00000467136.5_1_X:30854677-30861194:-|nuORF;ENSG00000157625|ENST00000288422|TAB3 ENST00000467136.5_1_X:30854677-30861194:-|nuORF ENST00000467136.5_1_X:30854677-30861194:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 438.7695007324219 2 439.260728 876.506903 0.15735 6.9117E-05 2.6845 0.0011792 2.8418 0.0012483 439.2619080726536 108.96 0.051544 108.96 108.94 109 0 4 2 2 0 0 0 0.11598 1 26696 26696 11.64 0 1 1735600 10858 3772 6708 6714 13513 13513 0.06370990248422004 GPWPTRKA 8 Unmodified _GPWPTRKA_ 0 0 0 ENSG00000196422|ENST00000356818|PPP1R26 ENSG00000196422|ENST00000356818|PPP1R26 ENSG00000196422|ENST00000356818|PPP1R26 MSMS UPN47_class_I_Rep_2 3 456.7578125 2 456.756144 911.497735 NaN NaN NaN NaN NaN NaN NaN 34.901 1 38.326 37.826 38.826 3.4253 0 0 0 0.40625 1 6368 6368 2.3027 0 1 10859 5305 6709 6715 13514 13514 0.038446416827468965 GPWWGRHRR 9 Unmodified _GPWWGRHRR_ 0 0 0 L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|219|3|anti-sense;L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|233|1|anti-sense L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|219|3|anti-sense L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|219|3|anti-sense MSMS UPN48_class_I_Rep_2 6 604.318603515625 2 604.32084 1206.62713 NaN NaN NaN NaN NaN NaN NaN 34.912 1 38.585 38.085 39.085 3.6735 0 0 0 0.40038 1 5687 5687 0.6015 0.14316 1 10860 14749 6710 6716 13515 13515 0.0320783608540296 GPYSSAPPLS 10 Unmodified _GPYSSAPPLS_ 0 0 0 ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B ENSG00000008196|ENST00000393655|TFAP2B ENSG00000008196|ENST00000393655|TFAP2B MSMS UPN48_class_I_Rep_2 6 487.790771484375 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 72.789 1 76.354 75.854 76.854 3.5645 0 0 0 0.53105 1 17058 17058 1.4819 0 1 10861 739 6711 6717 13516 13516 -0.01734511719087095 GPYSVPDFLWQ 11 Unmodified _GPYSVPDFLWQ_ 0 0 0 REV__LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|49|3|anti-sense REV__LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 436.879638671875 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 72.779 1 76.159 75.659 76.659 3.3799 0 0 0 0.38417 1 17830 17830 0.45452 0.087843 1 + 10862 30934 6712 6718 13517 13517 -0.022866201851002188 GQAWWRTPVI 10 Unmodified _GQAWWRTPVI_ 0 0 0 ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|1|intron;ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|2|intron ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|1|intron ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|1|intron MSMS UPN46_class_I_Rep_3 1 405.2218017578125 3 405.220735 1212.64038 NaN NaN NaN NaN NaN NaN NaN 54.517 1 54.517 54.017 55.017 0 0 0 0 0.53105 1 11808 11808 5.4027 0.10583 1 10863 2499 6713 6719 13518 13518 0.04256229354109564 GQAWWRTPVI 10 Unmodified _GQAWWRTPVI_ 0 0 0 ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|1|intron;ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|2|intron ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|1|intron ENSG00000125351.12,UPF3B,chrX,-,I12.1,119823044,119831651|77|5.9|1|intron MSMS UPN47_class_I_Rep_1 2 405.2218322753906 3 405.220735 1212.64038 NaN NaN NaN NaN NaN NaN NaN 48.207 1 51.889 51.389 52.389 3.6819 0 0 0 0.53105 1 10379 10379 3.0723 1.6171 1 10864 2499 6713 6719 13519 13519 0.04256229354109564 GQCEFQVGVGS 11 Unmodified _GQCEFQVGVGS_ 0 0 0 LTR12C_dup1958|chr11:78463952-78465467:-|2.4559549359369446|0.0647304047325709|5.25|151.0|1|1|sense LTR12C_dup1958|chr11:78463952-78465467:-|2.4559549359369446|0.0647304047325709|5.25|151.0|1|1|sense LTR12C_dup1958|chr11:78463952-78465467:-|2.4559549359369446|0.0647304047325709|5.25|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 555.7471313476562 2 555.747856 1109.48116 NaN NaN NaN NaN NaN NaN NaN 112.34 1 115.97 115.47 116.47 3.6321 0 0 0 0.38417 1 27258 27258 1.0715 0.27783 1 10865 15537 6714 6720 13520 13520 -0.06920272056163412 GQCSARWRRCK 11 Unmodified _GQCSARWRRCK_ 0 0 0 REV__ENST00000595376.1_1_19:49302930-49310451:-|nuORF REV__ENST00000595376.1_1_19:49302930-49310451:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 450.22216796875 3 450.892519 1349.65573 0.074565 3.3621E-05 0.25455 0.00011477 0.32911 0.0001484 451.22736329102287 48.835 0.084049 52.553 52.514 52.598 3.7175 6 4 2 0 0 0 22.551 1 9791 9791 0.40827 0 1 25555 + 10866 23191 6715 6721 13521 13521 -0.005115503919796538 GQDFAYGSR 9 Unmodified _GQDFAYGSR_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 MULTI-MSMS UPN46_class_I_Rep_3 1 500.7278747558594 2 500.727781 999.441008 0.27705 0.00013873 0.17664 8.8451E-05 0.45369 0.00022718 500.7277392508359 40.248 0.77941 40.248 39.938 40.717 0 166 88 3 0 0 0 0.088679 2 7799 7799;7830 36.506 8.8774 1 443750 10867 1726 6716 6722 13522;13523 13522 -0.05873450664421398 GQDKGKEGLG 10 Unmodified _GQDKGKEGLG_ 0 0 0 MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|26|1|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|26|1|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.7576904296875 2 494.756538 987.498523 -0.46581 -0.00023046 0.35062 0.00017347 -0.11519 -5.699E-05 494.7566091493521 26.569 0.40719 29.917 29.718 30.125 3.3478 45 33 2 0 0 0 0.56189 1 3941 3941 2.4985 0 1 39032 10868 15921 6717 6723 13524 13524 0.004273915411545204 GQDSEEMEGP 10 Unmodified _GQDSEEMEGP_ 0 0 0 REV__ENSG00000011590|ENST00000392197|ZBTB32 REV__ENSG00000011590|ENST00000392197|ZBTB32 MULTI-MSMS UPN47_class_I_Rep_2 3 539.7044067382812 2 539.703311 1077.39207 0.43412 0.0002343 0.50316 0.00027156 0.93728 0.00050586 539.7034794725679 77.865 0.49868 81.208 80.938 81.437 3.3428 63 52 2 0 0 0 0.56118 1 19355 19355 2.9952 0.69251 1 96879 + 10869 17582 6718 6724 13525 13525 -0.1435315180631278 GQEFIRVGY 9 Unmodified _GQEFIRVGY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS UPN46_class_I_Rep_3 1 534.77734375 2 534.777274 1067.53999 0.265 0.00014172 -0.05035 -2.6926E-05 0.21465 0.00011479 534.7772210403195 54.811 0.71234 54.811 54.461 55.174 0 198 83 3 0 0 0 0.0064536 3 11877 11846;11877;11911 133.05 79.219 1 1104100 10870 1714 6719 6725 13526;13527;13528 13527 0.008925723004722386 GQFADPHLFY 10 Unmodified _GQFADPHLFY_ 0 0 0 REV__ENSG00000187554|ENST00000642603|TLR5 REV__ENSG00000187554|ENST00000642603|TLR5 MSMS UPN47_class_I_Rep_1 2 597.780517578125 2 597.782556 1193.55056 NaN NaN NaN NaN NaN NaN NaN 35.708 1 39.384 38.884 39.884 3.6762 0 0 0 0.53105 1 6580 6580 9.3831 0 1 + 10871 20933 6720 6726 13529 13529 -0.038474450451076336 GQFGTINNF 9 Unmodified _GQFGTINNF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS UPN46_class_I_Rep_3 1 499.239990234375 2 499.240524 996.466495 0.24106 0.00012035 -0.064659 -3.228E-05 0.1764 8.8065E-05 499.2404235094697 62.981 0.33826 62.981 62.796 63.134 0 55 36 2 0 0 0 0.0203 4 14098 14083;14098;14121;14149 63.227 25.253 1 111660 10872 2541 6721 6727 13530;13531;13532;13533 13531 -0.031879761420100294 GQFGVGFYSAY 11 Unmodified _GQFGVGFYSAY_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN46_class_I_Rep_3 1 598.2738037109375 2 598.274564 1194.53457 0.54998 0.00032904 0.071847 4.2984E-05 0.62182 0.00037202 598.2744851047947 76.556 0.5634 76.556 76.236 76.799 0 111 52 3 0 0 0 0.00087677 4 17821 17786;17821;17856;17896 84.522 61.786 1 372090 10873 1207;1424;16849 6722 6728 13534;13535;13536;13537 13535 -0.054911512819899144 GQFPGHNEF 9 Unmodified _GQFPGHNEF_ 0 0 0 ENSG00000163171|ENST00000295324|CDC42EP3 ENSG00000163171|ENST00000295324|CDC42EP3 ENSG00000163171|ENST00000295324|CDC42EP3 MULTI-MSMS UPN46_class_I_Rep_3 1 516.73046875 2 516.730323 1031.44609 0.30881 0.00015957 -0.19356 -0.00010002 0.11524 5.955E-05 516.7301467995062 42.268 1.0758 42.268 41.873 42.949 0 166 114 2 0 0 0 0.037922 5 8351 8281;8316;8351;8386;8419 53.833 53.833 1 356470 10874 3989 6723 6729 13538;13539;13540;13541;13542 13540 -0.06837146801831295 GQFPGHNEFF 10 Unmodified _GQFPGHNEFF_ 0 0 0 ENSG00000163171|ENST00000295324|CDC42EP3 ENSG00000163171|ENST00000295324|CDC42EP3 ENSG00000163171|ENST00000295324|CDC42EP3 MSMS UPN46_class_I_Rep_3 1 590.264404296875 2 590.26453 1178.51451 NaN NaN NaN NaN NaN NaN NaN 60.41 1 60.41 59.91 60.91 0 0 0 0 0.53105 1 13399 13399 24.991 6.8446 1 10875 3989 6724 6730 13543 13543 -0.06760902221981269 GQFPGHNEFF 10 Unmodified _GQFPGHNEFF_ 0 0 0 ENSG00000163171|ENST00000295324|CDC42EP3 ENSG00000163171|ENST00000295324|CDC42EP3 ENSG00000163171|ENST00000295324|CDC42EP3 MSMS UPN46_class_I_Rep_3 1 590.265625 2 590.26453 1178.51451 NaN NaN NaN NaN NaN NaN NaN 60.683 1 60.683 60.183 61.183 0 0 0 0 0.53105 1 13471 13471 18.373 4.467 1 10876 3989 6724 6730 13544 13544 -0.06760902221981269 GQFTCSGPCY 10 Unmodified _GQFTCSGPCY_ 0 0 0 REV__MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|55|1|anti-sense REV__MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|55|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.7039794921875 2 531.704602 1061.39465 0.30488 0.0001621 -0.054578 -2.9019E-05 0.2503 0.00013308 531.704455967551 45.642 0.40678 45.642 45.455 45.862 0 76 40 2 0 0 0 0.52083 3 9266 9266;9309;9349 9.3831 3.6513 1 260290 + 10877 31424 6725 6731 13545;13546;13547 13545 -0.13358974882362418 GQGTPTAYL 9 Unmodified _GQGTPTAYL_ 0 0 0 ENST00000354177.8_1_1:26142832-26143246:+|nuORF ENST00000354177.8_1_1:26142832-26143246:+|nuORF ENST00000354177.8_1_1:26142832-26143246:+|nuORF MSMS UPN47_class_I_Rep_3 4 454.2292175292969 2 454.229625 906.444697 NaN NaN NaN NaN NaN NaN NaN 50.485 1 53.711 53.211 54.211 3.2262 0 0 0 0.38639 1 11157 11157 3.9444 1.3669 1 10878 6274 6726 6732 13548 13548 -0.012267808905903621 GQHNQSVNY 9 Unmodified _GQHNQSVNY_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;ENST00000558009.1_1_15:86262473-86265428:+|nuORF nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS UPN46_class_I_Rep_3 1 523.7366943359375 2 523.736137 1045.45772 -0.15189 -7.9552E-05 -0.049031 -2.5679E-05 -0.20092 -0.00010523 523.7361384640964 20.064 0.57767 20.064 19.69 20.267 0 99 57 2 0 0 0 0.082592 2 1966 1966;2005 37.974 1.9298 1 165390 10879 4487 6727 6733 13549;13550 13549 -0.06318949778460592 GQHTSLPLTF 10 Unmodified _GQHTSLPLTF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS UPN47_class_I_Rep_3 4 550.7899780273438 2 550.790381 1099.56621 NaN NaN NaN NaN NaN NaN NaN 49.513 1 52.739 52.239 53.239 3.2262 0 0 0 0.53105 1 10858 10858 6.2058 0 1 10880 1181 6728 6734 13551 13551 0.02040841471944077 GQHVATQHF 9 Unmodified _GQHVATQHF_ 0 0 0 ENST00000530796.1_1_8:145139736-145140383:+|nuORF;ENST00000534072.1_1_8:145139936-145140713:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF;nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1 ENST00000530796.1_1_8:145139736-145140383:+|nuORF ENST00000530796.1_1_8:145139736-145140383:+|nuORF MSMS UPN46_class_I_Rep_3 1 512.7515258789062 2 512.75159 1023.48863 NaN NaN NaN NaN NaN NaN NaN 22.85 1 22.85 22.35 23.35 0 0 0 0 0.39036 1 2777 2777 2.9952 0.41776 1 10881 5393 6729 6735 13552 13552 -0.022177516735723657 GQIEVVPEV 9 Unmodified _GQIEVVPEV_ 0 0 0 PHF3|p.P1843Sfs*46|1|0.05|ENSG00000118482|chr6:63713108-63713109|-/C|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 PHF3|p.P1843Sfs*46|1|0.05|ENSG00000118482|chr6:63713108-63713109|-/C|frameshift_variant PHF3|p.P1843Sfs*46|1|0.05|ENSG00000118482|chr6:63713108-63713109|-/C|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 485.2668151855469 2 485.266207 968.517862 0.21965 0.00010659 1.0373 0.00050335 1.2569 0.00060994 485.26698075036734 65.302 0.15073 65.302 65.246 65.396 0 27 16 2 0 0 0 0.35123 1 14748 14748 10.8 2.644 1 190870 10882 2250 6730 6736 13553 13553 0.032343478320512986 GQKLKQRLR 9 Unmodified _GQKLKQRLR_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS UPN46_class_I_Rep_3 1 563.862060546875 2 563.862006 1125.70946 -0.15504 -8.742E-05 -0.046358 -2.614E-05 -0.2014 -0.00011356 563.8619463387386 12.708 0.24336 12.708 12.667 12.91 0 28 20 2 0 0 0 0.42249 1 184 184 6.7232 0 1 133940 10883 2898 6731 6737 13554 13554 0.15163313373682286 GQKVLVNVL 9 Unmodified _GQKVLVNVL_ 0 0 0 ENST00000494893.5_1_2:27594167-27597059:+|nuORF;ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17 ENST00000494893.5_1_2:27594167-27597059:+|nuORF ENST00000494893.5_1_2:27594167-27597059:+|nuORF MSMS UPN46_class_I_Rep_3 1 485.30816650390625 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 56.133 1 56.133 55.633 56.633 0 0 0 0 0.15455 1 12231 12231 19.257 1.122 1 10884 2115 6732 6738 13555 13555 0.11630923719599195 GQLWLYHP 8 Unmodified _GQLWLYHP_ 0 0 0 REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|53|1|sense REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|53|1|sense MSMS UPN46_class_I_Rep_3 1 507.2660827636719 2 507.263802 1012.51305 NaN NaN NaN NaN NaN NaN NaN 48.302 1 48.302 47.802 48.802 0 0 0 0 0.39624 1 10052 10052 9.3474 1.4373 1 + 10885 23559 6733 6739 13556 13556 0.00729508479935248 GQNAAVVHR 9 Unmodified _GQNAAVVHR_ 0 0 0 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 MULTI-MSMS UPN46_class_I_Rep_3 1 476.25921630859375 2 476.259582 950.504612 -0.34899 -0.00016621 -0.072829 -3.4685E-05 -0.42182 -0.0002009 476.25943793719506 14.176 0.40195 14.176 14.053 14.455 0 56 46 2 0 0 0 0.14216 2 557 557;585 26.268 10.421 1 39443 10886 3288 6734 6740 13557;13558 13557 0.02737954563326639 GQNKKVMIY 9 Oxidation (M) _GQNKKVM(Oxidation (M))IY_ GQNKKVM(1)IY GQNKKVM(55)IY 0 0 1 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5 ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5 ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS UPN46_class_I_Rep_3 1 548.7946166992188 2 548.794609 1095.57467 0.042703 2.3435E-05 0.029691 1.6294E-05 0.072394 3.9729E-05 548.7945781549918 25.812 1.3133 25.812 25.359 26.672 0 241 118 3 0 0 0 0.035561 1 3580 3580 54.774 24.137 1 266100 10887 1978;2174 6735 6741 13559 13559 63 0.03070072116929623 GQNSLVVI 8 Unmodified _GQNSLVVI_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|28|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|28|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|28|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 415.2451171875 2 415.242535 828.470518 0.097914 4.0658E-05 2.3117 0.00095991 2.4096 0.0010006 415.24408795821023 96.628 0.32928 100.4 100.19 100.52 3.7767 71 45 3 0 0 0 0.82752 1 23973 23973 2.3027 0 1 363300 10888 8516 6736 6742 13560 13560 0.049421133517171256 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS UPN48_class_I_Rep_3 7 551.266845703125 2 551.266207 1100.51786 0.44537 0.00024551 -0.077186 -4.255E-05 0.36818 0.00020296 551.2660504193124 77.202 0.34538 80.803 80.617 80.962 3.6016 50 29 2 0 0 0 0.26468 1 18233 18233 16.149 2.2431 1 135080 10889 4119 6737 6743 13561 13561 -0.02837652167977467 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MATCH UPN48_class_I_Rep_1 5 2 551.266207 1100.51786 0.51774 0.00028541 0.15417 8.4988E-05 0.67191 0.0003704 551.2663167780878 77.305 0.55651 80.815 80.569 81.125 3.5102 0.015872 0.0001829 NaN 16.149 61 47 2 NaN NaN NaN NaN 0 NaN NaN 0 162020 10890 4119 6737 6743 -0.02837652167977467 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 551.266207 1100.51786 0.48585 0.00026783 -0.091299 -5.033E-05 0.39455 0.0002175 551.2661025501047 77.169 0.31735 80.78 80.525 80.842 3.6116 -0.019462 -8.7733E-05 NaN 16.149 43 30 2 NaN NaN NaN NaN 0 NaN NaN 0 141260 10891 4119 6737 6743 -0.02837652167977467 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 551.266207 1100.51786 0.44537 0.00024551 -0.077186 -4.255E-05 0.36818 0.00020296 551.2660504193124 77.202 0.34538 80.803 80.617 80.962 3.6016 0.0035896 -7.2173E-05 NaN 16.149 50 29 2 NaN NaN NaN NaN 0 NaN NaN 0 135080 10892 4119 6737 6743 -0.02837652167977467 GQPRARWP 8 Unmodified _GQPRARWP_ 0 0 0 REV__ENST00000303305.10_1_12:56498166-56498238:+|nuORF REV__ENST00000303305.10_1_12:56498166-56498238:+|nuORF MSMS UPN46_class_I_Rep_3 1 484.1023254394531 2 484.264668 966.514782 NaN NaN NaN NaN NaN NaN NaN 47.087 1 47.087 46.587 47.587 0 0 0 0 0.40625 1 9709 9709 2.3027 0 1 + 10893 21677 6738 6744 13562 13562 0.0301856228854831 GQRIVTRL 8 Unmodified _GQRIVTRL_ 0 0 0 REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|29|2|sense REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|29|2|sense MSMS UPN47_class_I_Rep_3 4 471.7943420410156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 27.077 1 30.42 29.92 30.92 3.3422 0 0 0 0.40738 1 4059 4059 0.79363 0 1 + 10894 25350 6739 6745 13563 13563 0.10392288636876401 GQRLVYQF 8 Unmodified _GQRLVYQF_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1;ENST00000404600.2_1_6:1514778-1515111:-|nuORF ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000120690|P32519-2|ELF1;ENST00000404600.2_1_6:1514778-1515111:-|nuORF ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS UPN46_class_I_Rep_3 1 505.7738952636719 2 505.774534 1009.53451 0.24412 0.00012347 -0.22763 -0.00011513 0.016484 8.3374E-06 505.7743863107346 53.329 0.4959 53.329 53.056 53.552 0 91 50 3 0 0 0 0.82752 1 11434 11434 36.044 3.7387 1 388870 10895 1600;2334;1894;6607 6740 6746 13564 13564 0.030128935086509046 GQRPLLGGF 9 Unmodified _GQRPLLGGF_ 0 0 0 Tigger15a_dup4190|chr15:90039746-90040022:-|1.4011848340016326|0.0215098683074707|6.03|151.0|2|1|sense Tigger15a_dup4190|chr15:90039746-90040022:-|1.4011848340016326|0.0215098683074707|6.03|151.0|2|1|sense Tigger15a_dup4190|chr15:90039746-90040022:-|1.4011848340016326|0.0215098683074707|6.03|151.0|2|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 472.97119140625 2 472.769252 943.52395 0.16069 7.5969E-05 0.54143 0.00025597 0.70212 0.00033194 472.7703148940524 57.033 0.030853 57.033 57.02 57.051 0 5 3 2 0 0 0 0.11959 1 12474 12474 4.3292 0.38484 1 62620 10896 33240 6741 6747 13565 13565 0.049929108542414724 GQRQVGVGY 9 Unmodified _GQRQVGVGY_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS UPN46_class_I_Rep_3 1 482.2540283203125 2 482.253966 962.493378 0.009027 4.3533E-06 -0.18891 -9.1102E-05 -0.17988 -8.6749E-05 482.25381129506695 29.807 0.82601 29.807 29.534 30.36 0 124 70 3 0 0 0 0.074367 2 4731 4727;4731 39.957 28.317 1 252590 10897 1405 6742 6748 13566;13567 13567 0.010631324691871669 GQRVCPCL 8 Unmodified _GQRVCPCL_ 0 0 0 L1ME4b_dup9045|chr7:36530676-36531060:+|1.1945189685735262|0.1387332689015407|3.11|151.0|19|1|anti-sense L1ME4b_dup9045|chr7:36530676-36531060:+|1.1945189685735262|0.1387332689015407|3.11|151.0|19|1|anti-sense L1ME4b_dup9045|chr7:36530676-36531060:+|1.1945189685735262|0.1387332689015407|3.11|151.0|19|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 438.2141418457031 2 438.21494 874.415328 -1.1815 -0.00051774 -0.17633 -7.7269E-05 -1.3578 -0.00059501 438.2146971589141 17.956 0.74161 21.314 20.965 21.706 3.3581 115 84 3 0 0 0 0.82752 1 1361 1361 5.2307 0 1 63831 10898 12945 6743 6749 13568 13568 -0.026903397120690897 GQRYTYLKF 9 Unmodified _GQRYTYLKF_ 0 0 0 L1ME4b_dup6571|chr5:76917906-76918208:-|2.378853172626077|0.0103990729740134|7.84|149.0|20|3|anti-sense L1ME4b_dup6571|chr5:76917906-76918208:-|2.378853172626077|0.0103990729740134|7.84|149.0|20|3|anti-sense L1ME4b_dup6571|chr5:76917906-76918208:-|2.378853172626077|0.0103990729740134|7.84|149.0|20|3|anti-sense MSMS UPN48_class_I_Rep_1 5 588.3156127929688 2 588.314023 1174.61349 NaN NaN NaN NaN NaN NaN NaN 42.771 1 46.279 45.779 46.779 3.5079 0 0 0 0.39518 1 7950 7950 1.8442 0.19162 1 10899 12936 6744 6750 13569 13569 0.03317120742917723 GQSGLFTQY 9 Unmodified _GQSGLFTQY_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000480996.1_1_9:6805652-6819052:+|nuORF;ENSG00000127663.15,KDM4B,chr19,+,I8.1,5071060,5074090|35|6.87|4|intron;ENSG00000127663.15,KDM4B,chr19,+,I8.1,5071060,5074090|35|6.87|2|intron;ENSG00000127663.15,KDM4B,chr19,+,I8.1,5071060,5074090|35|6.87|3|intron;ENSG00000107077.19,KDM4C,chr9,+,I17.1,6984405,6986343|27|5.33|2|intron;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000107077.19,KDM4C,chr9,+,I17.1,6984405,6986343|27|5.33|1|intron;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C nc|ENSG00000127663|O94953|KDM4B;nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000127663|O94953|KDM4B MULTI-MSMS UPN46_class_I_Rep_3 1 500.7414245605469 2 500.740357 999.46616 0.23198 0.00011616 1.0945 0.00054804 1.3264 0.0006642 500.74087334610886 59.644 0.48276 59.644 59.239 59.722 0 99 55 3 0 0 0 0.029742 3 13195 13118;13158;13195 57.249 26.613 1 722330 10900 2571;1810 6745 6751 13570;13571;13572 13572 -0.033593958618666875 GQSGLFTQY 9 Unmodified _GQSGLFTQY_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000480996.1_1_9:6805652-6819052:+|nuORF;ENSG00000127663.15,KDM4B,chr19,+,I8.1,5071060,5074090|35|6.87|4|intron;ENSG00000127663.15,KDM4B,chr19,+,I8.1,5071060,5074090|35|6.87|2|intron;ENSG00000127663.15,KDM4B,chr19,+,I8.1,5071060,5074090|35|6.87|3|intron;ENSG00000107077.19,KDM4C,chr9,+,I17.1,6984405,6986343|27|5.33|2|intron;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000107077.19,KDM4C,chr9,+,I17.1,6984405,6986343|27|5.33|1|intron;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C nc|ENSG00000127663|O94953|KDM4B;nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000127663|O94953|KDM4B MSMS UPN46_class_I_Rep_3 1 500.7411804199219 2 500.740357 999.46616 NaN NaN NaN NaN NaN NaN NaN 59.787 1 59.787 59.287 60.287 0 0 0 0 0.21832 1 13238 13238 15.248 3.6082 1 10901 2571;1810 6745 6751 13573 13573 -0.033593958618666875 GQSPLSQKY 9 Unmodified _GQSPLSQKY_ 0 0 0 ENST00000520874.1_1_8:108995475-108995910:+|nuORF;ENST00000432731.2_1_1:111390701-111391313:-|nuORF;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2 ENST00000520874.1_1_8:108995475-108995910:+|nuORF ENST00000520874.1_1_8:108995475-108995910:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 504.7628479003906 2 504.261456 1006.50836 0.12922 6.516E-05 0.19378 9.7717E-05 0.323 0.00016288 504.2615074610779 33.423 0.66531 33.423 33.15 33.815 0 96 54 2 0 0 0 0.026395 2 5850 5801;5850 59.368 19.419 1 183380 10902 3515 6746 6752 13574;13575 13575 0.005365795465081646 GQTHAYIY 8 Unmodified _GQTHAYIY_ 0 0 0 REV__L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|5|1|sense REV__L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.73046875 2 476.729792 951.445031 0.23237 0.00011078 0.59587 0.00028407 0.82823 0.00039484 476.7300702589771 84.136 0.4836 87.547 87.261 87.745 3.4116 101 61 2 0 0 0 0.82752 2 20925 20925;20937 2.3027 1.5091 1 175340 + 10903 26851 6747 6753 13576;13577 13576 -0.03263361170718326 GQTHLIGR 8 Unmodified _GQTHLIGR_ 0 0 0 REV__L1PA5_dup8176|chr11:31693167-31696634:-|1.528010056528732|0.0468127520851938|5.03|151.0|54|2|sense REV__L1PA5_dup8176|chr11:31693167-31696634:-|1.528010056528732|0.0468127520851938|5.03|151.0|54|2|sense MSMS UPN47_class_I_Rep_2 3 441.2526550292969 2 441.251226 880.487899 NaN NaN NaN NaN NaN NaN NaN 96.775 1 100.25 99.754 100.75 3.4791 0 0 0 0.4044 1 23769 23769 4.756 0 1 + 10904 29804 6748 6754 13578 13578 0.04287453677386566 GQVKKETRY 9 Unmodified _GQVKKETRY_ 0 0 0 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 MULTI-MSMS UPN46_class_I_Rep_3 1 554.8087768554688 2 554.809105 1107.60366 -0.18789 -0.00010424 -0.97975 -0.00054357 -1.1676 -0.00064781 554.8091430208826 13.196 0.37417 13.196 12.98 13.354 0 70 39 3 0 0 0 0.36258 1 305 305 10.151 4.3671 1 64746 10905 4493 6749 6755 13579 13579 0.0541593273756007 GQVMYRVIQ 9 Unmodified _GQVMYRVIQ_ 0 0 0 ENSG00000158773|ENST00000368021|USF1;ENST00000491629.5_1_1:161011414-161013065:-|nuORF ENSG00000158773|ENST00000368021|USF1 ENSG00000158773|ENST00000368021|USF1 MULTI-MSMS UPN47_class_I_Rep_1 2 547.7951049804688 2 547.294776 1092.575 0.38826 0.00021249 -1.4617 -0.00079999 -1.0735 -0.0005875 547.7957878228723 55.467 0.69669 58.946 58.664 59.361 3.4785 69 40 3 0 0 0 0.42249 2 12542 12542;12571 6.7232 0.51738 1 118880 10906 3812 6750 6756 13580;13581 13580 0.032414918367749124 GQVQKIVLY 9 Unmodified _GQVQKIVLY_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN46_class_I_Rep_3 1 524.3137817382812 2 524.313492 1046.61243 0.26775 0.00014039 -0.11502 -6.0306E-05 0.15273 8.0081E-05 524.3133531848619 51.813 0.31891 51.813 51.565 51.884 0 48 36 2 0 0 0 0.20276 1 11010 11010 20.454 6.9457 1 209410 10907 3215 6751 6757 13582 13582 0.09098906374038052 GQWKALDWSS 10 Unmodified _GQWKALDWSS_ 0 0 0 ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9 ENST00000482490.5_1_3:64536549-64672246:-|nuORF ENST00000482490.5_1_3:64536549-64672246:-|nuORF MSMS UPN47_class_I_Rep_2 3 589.2833251953125 2 589.285463 1176.55637 NaN NaN NaN NaN NaN NaN NaN 50.963 1 54.301 53.801 54.801 3.3386 0 0 0 0.53105 1 11248 11248 1.4819 0.15237 1 10908 4027 6752 6758 13583 13583 -0.02484346533447024 GQWRKRPK 8 Unmodified _GQWRKRPK_ 0 0 0 REV__ENST00000308893.8_1_16:29985169-29989140:+|nuORF REV__ENST00000308893.8_1_16:29985169-29989140:+|nuORF MSMS UPN46_class_I_Rep_3 1 528.3141479492188 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 93.231 1 93.231 92.731 93.731 0 0 0 0 0.40746 1 22589 22589 0.69038 0 1 + 10909 21697 6753 6759 13584 13584 0.08970799622352388 GQWWCWLR 8 Unmodified _GQWWCWLR_ 0 0 0 ENST00000393810.5_1_6:44224577-44225233:-|nuORF ENST00000393810.5_1_6:44224577-44225233:-|nuORF ENST00000393810.5_1_6:44224577-44225233:-|nuORF MSMS UPN46_class_I_Rep_3 1 567.7702026367188 2 567.768729 1133.5229 NaN NaN NaN NaN NaN NaN NaN 25.965 1 25.965 25.465 26.465 0 0 0 0 0.4044 1 3643 3643 4.756 0.42677 1 10910 6539 6754 6760 13585 13585 -0.03851626786354245 GQYPRALEL 9 Unmodified _GQYPRALEL_ 0 0 0 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 MULTI-MSMS UPN48_class_I_Rep_1 5 523.7854614257812 2 523.785099 1045.55564 0.28224 0.00014783 -0.26429 -0.00013843 0.017957 9.4055E-06 523.7850397417942 49.078 0.5116 52.602 52.448 52.959 3.5239 52 38 2 0 0 0 0.088679 1 9903 9903 36.506 13.77 1 147170 10911 4291 6755 6761 13586 13586 0.03468858817495857 GQYPRALEL 9 Unmodified _GQYPRALEL_ 0 0 0 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 MULTI-MSMS UPN48_class_I_Rep_3 7 523.7841186523438 2 523.785099 1045.55564 0.33041 0.00017306 -0.26784 -0.00014029 0.062561 3.2769E-05 523.7848241544881 49.146 0.47776 52.775 52.495 52.972 3.6291 58 35 2 0 0 0 0.20317 1 9868 9868 20.415 8.1739 1 158400 10912 4291 6755 6761 13587 13587 0.03468858817495857 GQYPRALEL 9 Unmodified _GQYPRALEL_ 0 0 0 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 MULTI-MATCH UPN48_class_I_Rep_2 6 2 523.785099 1045.55564 0.31112 0.00016296 -0.081126 -4.2493E-05 0.22999 0.00012047 523.7849606752889 48.918 0.65923 52.635 52.323 52.983 3.7175 -0.035513 0.00012524 NaN 36.506 57 44 2 NaN NaN NaN NaN 0 NaN NaN 0 104870 10913 4291 6755 6761 0.03468858817495857 GQYPTQPTY 9 Unmodified _GQYPTQPTY_ 0 0 0 ENST00000549041.1_1_12:51632691-51634266:+|nuORF;ENST00000552459.2_1_12:51634062-51634266:+|nuORF;ENST00000552173.5_1_12:51632691-51634513:+|nuORF;nc|ENSG00000183283|Q15038-4|DAZAP2;nc|ENSG00000183283|Q15038-3|DAZAP2;nc|ENSG00000183283|Q15038-6|DAZAP2;nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 ENST00000549041.1_1_12:51632691-51634266:+|nuORF ENST00000549041.1_1_12:51632691-51634266:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 527.7454833984375 2 527.745639 1053.47673 0.30897 0.00016306 -0.022996 -1.2136E-05 0.28597 0.00015092 527.7455438446099 44.192 0.84356 44.192 43.82 44.663 0 198 82 3 0 0 0 0.13244 1 8810 8810 27.629 10.516 1 1416300 10914 4992 6756 6762 13588 13588 -0.04787413207418467 GQYRLWLG 8 Unmodified _GQYRLWLG_ 0 0 0 REV__ENSG00000103042|ENST00000219320|SLC38A7 REV__ENSG00000103042|ENST00000219320|SLC38A7 MSMS UPN46_class_I_Rep_3 1 496.77001953125 2 496.769252 991.52395 NaN NaN NaN NaN NaN NaN NaN 16.055 1 16.055 15.555 16.555 0 0 0 0 0.40738 1 1029 1029 0.79363 0 1 + 10915 18211 6757 6763 13589 13589 0.027849108542454815 GRAGFGFV 8 Unmodified _GRAGFGFV_ 0 0 0 REV__ENST00000299626.9_1_11:77838464-77850674:-|nuORF REV__ENST00000299626.9_1_11:77838464-77850674:-|nuORF MSMS UPN46_class_I_Rep_3 1 405.23480224609375 2 405.716488 809.418422 NaN NaN NaN NaN NaN NaN NaN 45.113 1 45.113 44.613 45.613 0 0 0 0 0.40738 1 9143 9143 0.79363 0 1 + 10916 21666 6758 6764 13590 13590 0.006089947286227471 GRAPRPTP 8 Unmodified _GRAPRPTP_ 0 0 0 REV__ENST00000580513.1_1_17:63554840-63557252:-|nuORF REV__ENST00000580513.1_1_17:63554840-63557252:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 426.24603271484375 2 426.245944 850.477334 -0.069498 -2.9623E-05 0.092026 3.9226E-05 0.022528 9.6025E-06 426.24597397372406 78.406 0.87312 81.941 81.548 82.421 3.5352 218 107 4 0 0 0 0.82752 1 18748 18748 2.3027 0 1 748790 + 10917 23126 6759 6765 13591 13591 0.046114710229517186 GRARKAKSVHV 11 Unmodified _GRARKAKSVHV_ 0 0 0 L1PA13_dup6782|chr12:1339546-1340771:-|1.2613502603174669|0.0282035368383027|5.48|151.0|54|3|anti-sense L1PA13_dup6782|chr12:1339546-1340771:-|1.2613502603174669|0.0282035368383027|5.48|151.0|54|3|anti-sense L1PA13_dup6782|chr12:1339546-1340771:-|1.2613502603174669|0.0282035368383027|5.48|151.0|54|3|anti-sense MSMS UPN48_class_I_Rep_1 5 604.867919921875 2 604.870363 1207.72617 NaN NaN NaN NaN NaN NaN NaN 101.32 1 104.94 104.44 105.44 3.612 0 0 0 0.38417 1 24460 24460 2.2828 0.63015 1 10918 13782 6760 6766 13592 13592 0.13061814259640414 GRDDDDDDGDD 11 Unmodified _GRDDDDDDGDD_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MSMS UPN47_class_I_Rep_3 4 403.79541015625 3 403.797326 1208.37015 NaN NaN NaN NaN NaN NaN NaN 108.85 1 112.39 111.89 112.89 3.5382 0 0 0 0.38417 1 26693 26693 0.073264 0.073264 1 + 10919 18320 6761 6767 13593 13593 -0.22570285021220116 GRDGVKRRRRW 11 Unmodified _GRDGVKRRRRW_ 0 0 0 ENST00000181839.8_1_7:39989715-39990237:+|nuORF ENST00000181839.8_1_7:39989715-39990237:+|nuORF ENST00000181839.8_1_7:39989715-39990237:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 481.6179504394531 3 481.283503 1440.82868 0.11945 5.7491E-05 -0.06013 -2.894E-05 0.059322 2.8551E-05 481.28343241377337 95.386 0.19175 99.003 98.944 99.136 3.6167 39 22 2 0 0 0 0.68024 2 22962 22962;22970 0.50596 0 1 196200 10920 5854 6762 6768 13594;13595 13594 0.12589900051102632 GREISRDFA 9 Unmodified _GREISRDFA_ 0 0 0 ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B;ENSG00000179361.18,ARID3B,chr15,+,I3.1,74572934,74573131|35|5.83|1|intron;ENST00000448213.2_1_1:81967523-81968357:+|nuORF;ENST00000569680.1_1_15:74833658-74865607:+|nuORF;nc|ENSG00000179361|Q8IVW6-3|ARID3B ENSG00000179361|ENST00000346246|ARID3B ENSG00000179361|ENST00000346246|ARID3B MULTI-MSMS UPN47_class_I_Rep_1 2 525.76953125 2 525.76998 1049.52541 -0.13792 -7.2513E-05 -0.39357 -0.00020693 -0.53149 -0.00027944 525.76972884992 26.963 0.50887 30.73 30.505 31.014 3.7662 70 40 2 0 0 0 0.49187 1 3898 3898 1.4819 0.28856 1 95038 10921 4859 6763 6769 13596 13596 0.0026250015232562873 GRERRRRKKMV 11 Unmodified _GRERRRRKKMV_ 0 0 0 REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 491.63385009765625 3 491.300277 1470.879 0.26617 0.00013077 -2.8559 -0.0014031 -2.5897 -0.0012723 491.6335199934747 107.25 0.2763 110.93 110.78 111.06 3.6783 40 26 4 0 0 0 0.67462 1 25320 25320 1.0136 0.50762 1 2156100 + 10922 21885 6764 6770 13597 13597 0.1623968638457427 GRERRRRKKMV 11 Unmodified _GRERRRRKKMV_ 0 0 0 REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 491.300277 1470.879 0.26947 0.00013239 -2.7666 -0.0013592 -2.4972 -0.0012269 491.298685481385 106.99 0.11966 110.66 110.61 110.73 3.6724 -0.1975 -0.00094587 NaN 1.0136 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 94360 + 10923 21885 6764 6770 0.1623968638457427 GRERRRRKKMV 11 Unmodified _GRERRRRKKMV_ 0 0 0 REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 491.300277 1470.879 0.48793 0.00023972 -1.7856 -0.00087729 -1.2977 -0.00063757 491.29954505113545 107.38 0.17617 110.92 110.78 110.96 3.5345 0.059246 0.0005 NaN 1.0136 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 890660 + 10924 21885 6764 6770 0.1623968638457427 GRERRRRKKMV 11 Unmodified _GRERRRRKKMV_ 0 0 0 REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 491.300277 1470.879 0.26615 0.00013076 -1.8331 -0.00090061 -1.567 -0.00076986 491.29936318671315 107.26 0.13977 110.8 110.72 110.86 3.5382 -0.057987 0.00043002 NaN 1.0136 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 522870 + 10925 21885 6764 6770 0.1623968638457427 GRERRRRKKMV 11 Unmodified _GRERRRRKKMV_ 0 0 0 REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 491.300277 1470.879 0.26617 0.00013077 -2.8559 -0.0014031 -2.5897 -0.0012723 491.6335199934747 107.25 0.2763 110.93 110.78 111.06 3.6783 0.070486 -0.0010774 NaN 1.0136 40 26 4 NaN NaN NaN NaN 0 NaN NaN 0 2156100 + 10926 21885 6764 6770 0.1623968638457427 GRERRRRKKMV 11 Unmodified _GRERRRRKKMV_ 0 0 0 REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF REV__ENST00000358731.8_2_5:70751498-70751573:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 491.300277 1470.879 0.24279 0.00011928 -2.3072 -0.0011335 -2.0644 -0.0010143 491.29897404632464 107.3 0.079697 110.98 110.96 111.04 3.6813 0.12576 -0.00026876 NaN 1.0136 11 4 3 NaN NaN NaN NaN 0 NaN NaN 0 701900 + 10927 21885 6764 6770 0.1623968638457427 GRFLVISR 8 Unmodified _GRFLVISR_ 0 0 0 REV__Tigger13a_dup1886|chr10:906083-906479:-|1.1254608506396813|0.0167837716734178|6.07|151.0|8|2|sense REV__Tigger13a_dup1886|chr10:906083-906479:-|1.1254608506396813|0.0167837716734178|6.07|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 474.28228759765625 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 110.05 1 113.59 113.09 114.09 3.5347 0 0 0 0.40625 1 27031 27031 2.3027 0 1 + 10928 32584 6765 6771 13598 13598 0.09581190125209105 GRFSFEEFS 9 Unmodified _GRFSFEEFS_ 0 0 0 ENST00000556551.2_1_14:74398453-74398666:+|nuORF ENST00000556551.2_1_14:74398453-74398666:+|nuORF ENST00000556551.2_1_14:74398453-74398666:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.251220703125 2 553.251089 1104.48762 0.36884 0.00020406 -0.48121 -0.00026623 -0.11237 -6.2169E-05 553.7522864555149 60.536 0.10359 63.701 63.684 63.787 3.1651 11 8 2 0 0 0 0.48846 1 14234 14234 1.8442 0 1 150370 10929 7433 6766 6772 13599 13599 -0.06044010833147695 GRGKEKVVF 9 Unmodified _GRGKEKVVF_ 0 0 0 REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.3017272949219 2 510.303458 1018.59236 0.31885 0.00016271 -2.0305 -0.0010362 -1.7116 -0.00087345 510.3023537806305 107.99 0.41071 107.99 107.91 108.32 0 66 34 3 0 0 0 0.32682 1 26447 26447 12.241 1.4167 1 62658000 + 10930 23795 6767 6773 13600 13600 0.08381155434096854 GRGKEKVVF 9 Unmodified _GRGKEKVVF_ 0 0 0 REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.3038330078125 2 510.303458 1018.59236 0.32617 0.00016645 0.15535 7.9275E-05 0.48152 0.00024572 510.3034012292907 107.84 0.17793 111.38 111.3 111.48 3.5382 54 19 4 0 0 0 0.37599 1 26332 26332 9.3831 2.0939 1 54355000 + 10931 23795 6767 6773 13601 13601 0.08381155434096854 GRGKEKVVF 9 Unmodified _GRGKEKVVF_ 0 0 0 REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.30340576171875 2 510.303458 1018.59236 0.31918 0.00016288 0.10547 5.3821E-05 0.42465 0.0002167 510.30339099142185 107.81 0.15021 111.48 111.41 111.56 3.6783 40 13 4 0 0 0 0.37599 1 25494 25494 3.2813 0 1 65004000 + 10932 23795 6767 6773 13602 13602 0.08381155434096854 GRGKEKVVF 9 Unmodified _GRGKEKVVF_ 0 0 0 REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 510.303458 1018.59236 0.3562 0.00018177 -0.0071164 -3.6315E-06 0.34909 0.00017814 510.30333207312225 107.84 0.21249 111.51 111.43 111.64 3.6724 0.031643 -4.7381E-05 NaN 9.3831 38 13 5 NaN NaN NaN NaN 0 NaN NaN 0 45384000 + 10933 23795 6767 6773 0.08381155434096854 GRGKEKVVF 9 Unmodified _GRGKEKVVF_ 0 0 0 REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense REV__HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|34|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 510.303458 1018.59236 0.31928 0.00016293 -0.058489 -2.9847E-05 0.26079 0.00013308 510.3033133441366 107.99 0.10989 111.67 111.59 111.7 3.6746 0.18596 -9.9812E-05 NaN 9.3831 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 770720 + 10934 23795 6767 6773 0.08381155434096854 GRGKKPQA 8 Unmodified _GRGKKPQA_ 0 0 0 HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|109|3|sense HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|109|3|sense HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|109|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 421.2537841796875 2 421.253769 840.492984 0.078315 3.2991E-05 0.085755 3.6125E-05 0.16407 6.9115E-05 421.2537442434023 78.473 0.64907 78.473 78.171 78.82 0 103 70 2 0 0 0 0.82752 1 18387 18387 2.3027 1.5091 1 245430 10935 8076 6768 6774 13603 13603 0.06635757539982023 GRGKKPQA 8 Unmodified _GRGKKPQA_ 0 0 0 HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|109|3|sense HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|109|3|sense HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|109|3|sense MSMS UPN48_class_I_Rep_1 5 421.2547302246094 2 421.253769 840.492984 NaN NaN NaN NaN NaN NaN NaN 75.04 1 78.53 78.03 79.03 3.49 0 0 0 0.40625 1 17761 17761 2.3027 1.5091 1 10936 8076 6768 6774 13604 13604 0.06635757539982023 GRGKKTKQ 8 Unmodified _GRGKKTKQ_ 0 0 0 REV__L1PA15_dup211|chr1:110908230-110909573:+|6.302656247955712|0.0337273952274197|7.55|151.0|15|1|sense REV__L1PA15_dup211|chr1:110908230-110909573:+|6.302656247955712|0.0337273952274197|7.55|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 451.7798156738281 2 451.780151 901.545748 0.042787 1.933E-05 -0.15257 -6.8929E-05 -0.10979 -4.9599E-05 451.77987264212817 77.498 0.1758 81.02 80.867 81.043 3.5221 22 15 2 0 0 0 0.82752 1 18449 18449 2.3027 0.24298 1 57115 + 10937 29199 6769 6775 13605 13605 0.09103715602805096 GRGTFLRY 8 Unmodified _GRGTFLRY_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|199|3|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|199|3|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|199|3|anti-sense MSMS UPN46_class_I_Rep_3 1 484.840087890625 2 485.266876 968.519199 NaN NaN NaN NaN NaN NaN NaN 30.96 1 30.96 30.46 31.46 0 0 0 0 0.40625 1 5112 5112 2.3027 0 1 10938 12977 6770 6776 13606 13606 0.0336802671146188 GRGTPKIIHD 10 Unmodified _GRGTPKIIHD_ 0 0 0 ENST00000430710.7_1_14:21853502-21853595:-|nuORF ENST00000430710.7_1_14:21853502-21853595:-|nuORF ENST00000430710.7_1_14:21853502-21853595:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 547.8109130859375 2 547.309272 1092.60399 -0.21554 -0.00011797 -1.1054 -0.000605 -1.321 -0.00072297 547.8104261708944 12.2 0.094811 12.2 12.134 12.229 0 13 9 2 0 0 0 0.56354 1 55 55 1.3295 0.63916 1 48492 10939 6726 6771 6777 13607 13607 0.0613935245742141 GRHEKKTC 8 Unmodified _GRHEKKTC_ 0 0 0 Tigger7_dup1685|chr9:70196274-70198155:+|1.2899887724068118|0.4679433223378003|1.46|150.0|43|3|sense Tigger7_dup1685|chr9:70196274-70198155:+|1.2899887724068118|0.4679433223378003|1.46|150.0|43|3|sense Tigger7_dup1685|chr9:70196274-70198155:+|1.2899887724068118|0.4679433223378003|1.46|150.0|43|3|sense MSMS UPN46_class_I_Rep_3 1 479.749755859375 2 479.747993 957.481433 NaN NaN NaN NaN NaN NaN NaN 117.99 1 117.99 117.49 118.49 0 0 0 0 0.40472 1 29267 29267 4.3292 1.7518 1 10940 33454 6772 6778 13608 13608 0.000991924543427558 GRHFTQLNRL 10 Unmodified _GRHFTQLNRL_ 0 0 0 REV__L1PA15_dup7033|chr13:113539714-113541201:-|1.9233856409625143|0.3120927756187707|2.62|151.0|71|3|anti-sense REV__L1PA15_dup7033|chr13:113539714-113541201:-|1.9233856409625143|0.3120927756187707|2.62|151.0|71|3|anti-sense MSMS UPN48_class_I_Rep_2 6 621.3470458984375 2 621.34672 1240.67889 NaN NaN NaN NaN NaN NaN NaN 57.442 1 60.956 60.456 61.456 3.5142 0 0 0 0.53105 1 12424 12424 1.3295 0.13619 1 + 10941 29272 6773 6779 13609 13609 0.06817534988658736 GRHRLKPW 8 Unmodified _GRHRLKPW_ 0 0 0 ENST00000527544.5_1_11:65480238-65482390:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5 ENST00000527544.5_1_11:65480238-65482390:+|nuORF ENST00000527544.5_1_11:65480238-65482390:+|nuORF MSMS UPN48_class_I_Rep_1 5 525.3084106445312 2 525.30941 1048.60427 NaN NaN NaN NaN NaN NaN NaN 40.992 1 44.498 43.998 44.998 3.506 0 0 0 0.40738 1 7418 7418 0.79363 0 1 10942 4603 6774 6780 13610 13610 0.08190816967908177 GRIGYIYAL 9 Unmodified _GRIGYIYAL_ 0 0 0 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 MULTI-MSMS UPN47_class_I_Rep_3 4 513.2937622070312 2 513.292559 1024.57057 0.17954 9.2159E-05 0.43347 0.0002225 0.61301 0.00031465 513.292558586278 59.06 0.5531 62.226 62.115 62.668 3.1658 55 33 2 0 0 0 0.12799 1 13771 13771 28.487 3.813 1 140030 10943 2125 6775 6781 13611 13611 0.05926350685513171 GRIHKGDRVL 10 Unmodified _GRIHKGDRVL_ 0 0 0 nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;ENST00000511105.1_1_4:87684292-87687745:+|nuORF nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS UPN47_class_I_Rep_3 4 575.8436889648438 2 575.843813 1149.67307 0.50567 0.00029118 -1.1816 -0.0006804 -0.67591 -0.00038922 575.8431059742238 95.59 0.43022 98.999 98.758 99.188 3.4095 66 60 2 0 0 0 0.56354 1 23759 23759 1.3295 0.80477 1 124150 10944 4023 6776 6782 13612 13612 0.10422436476983421 GRIKGLLL 8 Unmodified _GRIKGLLL_ 0 0 0 REV__L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|60|3|sense REV__L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|60|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 435.2999572753906 2 435.300188 868.585822 -0.4424 -0.00019258 1.2067 0.00052527 0.76428 0.00033269 435.30036419145193 62.52 0.083656 65.689 65.659 65.743 3.1698 6 4 2 0 0 0 0.72333 1 14844 14844 0.69038 0 1 104850 + 10945 27298 6777 6783 13613 13613 0.14627262273381803 GRKEPQRHV 9 Unmodified _GRKEPQRHV_ 0 0 0 MLT1D_dup12683|chr10:49975628-49976003:-|2.3012504157941094|0.1608731955485856|3.84|151.0|6|2|sense;MLT1D_dup12667|chr10:48044285-48044660:+|1.2104500345422724|0.1461197713403378|3.05|148.0|6|2|sense;MLT1D_dup12661|chr10:47536176-47536551:+|2.6781760960945107|0.1655321401649377|4.02|151.0|6|2|sense MLT1D_dup12683|chr10:49975628-49976003:-|2.3012504157941094|0.1608731955485856|3.84|151.0|6|2|sense MLT1D_dup12683|chr10:49975628-49976003:-|2.3012504157941094|0.1608731955485856|3.84|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 553.8140869140625 2 553.812513 1105.61047 NaN NaN NaN NaN NaN NaN NaN 42.675 1 46.037 45.537 46.537 3.3611 0 0 0 0.38784 1 8727 8727 3.5965 1.019 1 10946 16329 6778 6784 13614 13614 0.06189290408792658 GRKFLQVIY 9 Unmodified _GRKFLQVIY_ 0 0 0 L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|2|1|sense L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|2|1|sense L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 562.3346557617188 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.48 1 113.15 112.65 113.65 3.67 0 0 0 0.38639 1 26000 26000 3.9444 0 1 10947 11010 6779 6785 13615 13615 0.09854301502286944 GRKFNPNYY 9 Unmodified _GRKFNPNYY_ 0 0 0 REV__ENSG00000172468|ENST00000307393|HSFY1 REV__ENSG00000172468|ENST00000307393|HSFY1 MULTI-MSMS UPN47_class_I_Rep_1 2 579.786865234375 2 579.788173 1157.56179 0.035888 2.0807E-05 -1.7687 -0.0010255 -1.7328 -0.0010047 579.7874006653983 43.179 0.54996 46.866 46.56 47.11 3.6875 47 36 2 0 0 0 0.25207 2 8860 8860;8911 16.942 2.3606 1 95221 + 10948 20339 6780 6786 13616;13617 13616 -0.010686229509701661 GRKLWKRFF 9 Unmodified _GRKLWKRFF_ 0 0 0 ENST00000473071.1_1_17:37899536-37900469:+|nuORF;nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7 ENST00000473071.1_1_17:37899536-37900469:+|nuORF ENST00000473071.1_1_17:37899536-37900469:+|nuORF MSMS UPN47_class_I_Rep_3 4 619.3720092773438 2 619.369467 1236.72438 NaN NaN NaN NaN NaN NaN NaN 93.226 1 96.631 96.131 97.131 3.4052 0 0 0 0.4007 1 23248 23248 0.52476 0.066424 1 10949 3230 6781 6787 13618 13618 0.11548805241659466 GRKQKLIQ 8 Unmodified _GRKQKLIQ_ 0 0 0 REV__L1MB4_dup5510|chr10:48357716-48359054:-|3.193924627296677|0.1848778385546976|4.11|151.0|24|2|sense REV__L1MB4_dup5510|chr10:48357716-48359054:-|3.193924627296677|0.1848778385546976|4.11|151.0|24|2|sense MSMS UPN47_class_I_Rep_3 4 485.811279296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 97.903 1 101.32 100.82 101.82 3.4216 0 0 0 0.40746 1 24255 24255 0.69038 0 1 + 10950 25982 6782 6788 13619 13619 0.12232861670997863 GRKQQMLERMW 11 Unmodified _GRKQQMLERMW_ 0 0 0 L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|187|3|sense;L1PA7_dup12584|chr20:3522345-3528081:+|4.940146692166972|0.0510302459137463|6.6|151.0|109|2|sense L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|187|3|sense L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|187|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 487.9169616699219 3 488.251712 1461.73331 0.17391 8.491E-05 -0.014515 -7.087E-06 0.15939 7.7823E-05 488.2518704220967 53.5 0.13515 57.019 56.935 57.07 3.5192 17 10 2 0 0 0 22.551 1 11220 11220 0.40827 0.31342 1 94206 10951 14754 6783 6789 13620 13620 0.0209104275354548 GRKTKTTAK 9 Unmodified _GRKTKTTAK_ 0 0 0 REV__ENST00000515807.5_1_5:78908488-78908852:+|nuORF REV__ENST00000515807.5_1_5:78908488-78908852:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 495.80621337890625 2 495.806365 989.598178 0.27476 0.00013623 0.10252 5.0828E-05 0.37728 0.00018706 495.80636827745496 81.937 0.1341 85.606 85.517 85.652 3.669 22 17 2 0 0 0 0.49026 1 19463 19463 1.6526 0.96225 1 88781 + 10952 22766 6784 6790 13621 13621 0.1029625394572804 GRKTKTTAK 9 Unmodified _GRKTKTTAK_ 0 0 0 REV__ENST00000515807.5_1_5:78908488-78908852:+|nuORF REV__ENST00000515807.5_1_5:78908488-78908852:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 495.806365 989.598178 0.25006 0.00012398 0.077993 3.8669E-05 0.32805 0.00016265 495.8062867431017 82.22 0.20277 85.557 85.407 85.609 3.337 0.0054273 5.6865E-06 NaN 1.6526 27 22 2 NaN NaN NaN NaN 0 NaN NaN 0 44080 + 10953 22766 6784 6790 0.1029625394572804 GRKTKTTAK 9 Unmodified _GRKTKTTAK_ 0 0 0 REV__ENST00000515807.5_1_5:78908488-78908852:+|nuORF REV__ENST00000515807.5_1_5:78908488-78908852:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 495.806365 989.598178 0.27476 0.00013623 0.10252 5.0828E-05 0.37728 0.00018706 495.80636827745496 81.937 0.1341 85.606 85.517 85.652 3.669 0.053897 3.0004E-05 NaN 1.6526 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 88781 + 10954 22766 6784 6790 0.1029625394572804 GRNVETVLY 9 Unmodified _GRNVETVLY_ 0 0 0 ENST00000371419.6_1_20:52824416-52824554:+|nuORF ENST00000371419.6_1_20:52824416-52824554:+|nuORF ENST00000371419.6_1_20:52824416-52824554:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 525.7824096679688 2 525.782556 1049.55056 -0.037734 -1.984E-05 0.0016521 8.6867E-07 -0.036081 -1.8971E-05 525.7824656077008 42.355 0.80191 46.035 45.704 46.506 3.6792 109 54 3 0 0 0 0.17897 1 8599 8599 22.736 0.98964 1 194030 10955 6389 6785 6791 13622 13622 0.027765549549030766 GRPESRNNS 9 Unmodified _GRPESRNNS_ 0 0 0 L1M7_dup1217|chr6:5614698-5615752:-|1.2874427724260102|0.0360768308892756|5.16|151.0|15|2|sense L1M7_dup1217|chr6:5614698-5615752:-|1.2874427724260102|0.0360768308892756|5.16|151.0|15|2|sense L1M7_dup1217|chr6:5614698-5615752:-|1.2874427724260102|0.0360768308892756|5.16|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 508.7864990234375 2 508.747036 1015.47952 NaN NaN NaN NaN NaN NaN NaN 23.598 1 23.598 23.098 24.098 0 0 0 0 0.39036 1 2986 2986 2.9952 0.41776 1 10956 9228 6786 6792 13623 13623 -0.027601450299130192 GRQCPKEHK 9 Unmodified _GRQCPKEHK_ 0 0 0 REV__nc|ENSG00000138663|Q9BT78-2|COPS4 REV__nc|ENSG00000138663|Q9BT78-2|COPS4 MSMS UPN47_class_I_Rep_1 2 541.7527465820312 2 541.779825 1081.5451 NaN NaN NaN NaN NaN NaN NaN 22.819 1 26.523 26.023 27.023 3.7042 0 0 0 0.39428 1 2717 2717 2.0598 0.40713 1 + 10957 31993 6787 6793 13624 13624 0.007585528914432871 GRQGWRASRG 10 Unmodified _GRQGWRASRG_ 0 0 0 ENST00000272227.7_1_2:10924435-10925081:-|nuORF ENST00000272227.7_1_2:10924435-10925081:-|nuORF ENST00000272227.7_1_2:10924435-10925081:-|nuORF MSMS UPN48_class_I_Rep_3 7 565.8004150390625 2 565.799937 1129.58532 NaN NaN NaN NaN NaN NaN NaN 15.243 1 18.782 18.282 19.282 3.5392 0 0 0 0.53105 1 569 569 0 0 1 10958 6011 6788 6794 13625 13625 0.02571235606205846 GRRAALAK 8 Unmodified _GRRAALAK_ 0 0 0 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 MSMS UPN46_class_I_Rep_3 1 421.7695617675781 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 91.179 1 91.179 90.679 91.679 0 0 0 0 0.40746 1 22012 22012 0.69038 0 1 10959 5564 6789 6795 13626 13626 0.09751750293912664 GRRALKQIKQ 10 Unmodified _GRRALKQIKQ_ 0 0 0 REV__AluJo_dup66621|chr17:63717936-63718221:-|1.2892545065190593|0.3761970411111459|1.78|151.0|3|1|sense REV__AluJo_dup66621|chr17:63717936-63718221:-|1.2892545065190593|0.3761970411111459|1.78|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 599.3807373046875 2 599.380563 1196.74657 0.48591 0.00029124 -0.61811 -0.00037048 -0.1322 -7.924E-05 599.3802370853945 95.114 0.46881 98.895 98.756 99.224 3.7804 137 65 3 0 0 0 0.54466 1 22586 22586 6.2058 1.3088 1 1816100 + 10960 16924 6790 6796 13627 13627 0.15606984919440947 GRRARVWRR 9 Unmodified _GRRARVWRR_ 0 0 0 ENSG00000170122|ENST00000382500|FOXD4;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 MULTI-MSMS UPN47_class_I_Rep_1 2 606.869140625 2 606.868489 1211.72242 0.52971 0.00032146 0.81373 0.00049383 1.3434 0.00081529 606.8689492790828 107.86 0.186 111.53 111.48 111.66 3.6713 20 10 3 0 0 0 0.26948 1 26457 26457 15.847 2.3393 1 9277800 10961 4454 6791 6797 13628 13628 0.1250318927641274 GRRARVWRR 9 Unmodified _GRRARVWRR_ 0 0 0 ENSG00000170122|ENST00000382500|FOXD4;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 606.868489 1211.72242 0.63475 0.00038521 1.1245 0.00068243 1.7593 0.0010676 606.8691454139687 107.89 0.22166 111.42 111.37 111.59 3.5345 -0.089577 -8.356E-05 NaN 15.847 56 25 3 NaN NaN NaN NaN 0 NaN NaN 0 8371600 10962 4454 6791 6797 0.1250318927641274 GRRARVWRR 9 Unmodified _GRRARVWRR_ 0 0 0 ENSG00000170122|ENST00000382500|FOXD4;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 606.868489 1211.72242 0.5099 0.00030944 1.4713 0.0008929 1.9812 0.0012023 606.8694636403875 107.88 0.22069 111.42 111.35 111.57 3.5382 -0.092547 0.00033738 NaN 15.847 56 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6733200 10963 4454 6791 6797 0.1250318927641274 GRRARVWRR 9 Unmodified _GRRARVWRR_ 0 0 0 ENSG00000170122|ENST00000382500|FOXD4;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 606.868489 1211.72242 0.5525 0.0003353 1.185 0.00071912 1.7375 0.0010544 606.8691133658589 107.85 0.1852 111.53 111.47 111.66 3.6813 0.017019 -1.0188E-05 NaN 15.847 43 18 3 NaN NaN NaN NaN 0 NaN NaN 0 11222000 10964 4454 6791 6797 0.1250318927641274 GRRDVGAF 8 Unmodified _GRRDVGAF_ 0 0 0 REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 439.2362976074219 2 439.235576 876.456599 0.15701 6.8965E-05 0.77805 0.00034175 0.93506 0.00041071 439.2360183387761 95.538 0.4686 99.303 99.122 99.591 3.7648 106 61 2 0 0 0 0.82752 1 23703 23703 5.2307 0.47466 1 101200 + 10965 27493 6792 6798 13629 13629 0.013428806432784768 GRRDVGAF 8 Unmodified _GRRDVGAF_ 0 0 0 REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 439.235576 876.456599 0.15741 6.9139E-05 0.24043 0.0001056 0.39784 0.00017474 439.23570806851046 99.124 0.053329 99.124 99.084 99.137 0 -0.017662 -0.00056963 NaN 5.2307 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 104050 + 10966 27493 6792 6798 0.013428806432784768 GRRDVGAF 8 Unmodified _GRRDVGAF_ 0 0 0 REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 439.235576 876.456599 0.15701 6.8965E-05 0.77805 0.00034175 0.93506 0.00041071 439.2360183387761 95.538 0.4686 99.303 99.122 99.591 3.7648 0.16158 -9.7346E-05 NaN 5.2307 106 61 2 NaN NaN NaN NaN 0 NaN NaN 0 101200 + 10967 27493 6792 6798 0.013428806432784768 GRRDVGAF 8 Unmodified _GRRDVGAF_ 0 0 0 REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense REV__L1MDa_dup1077|chr2:238083834-238084310:+|1.1402944924556215|0.1422779153905663|3.0|151.0|23|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 439.235576 876.456599 -0.11576 -5.0847E-05 1.0145 0.0004456 0.89873 0.00039476 439.2361045405199 95.522 0.41324 98.998 98.838 99.252 3.4753 -0.14392 0.00011037 NaN 5.2307 89 56 2 NaN NaN NaN NaN 0 NaN NaN 0 134450 + 10968 27493 6792 6798 0.013428806432784768 GRREALALT 9 Unmodified _GRREALALT_ 0 0 0 REV__ENST00000463982.2_1_3:137890290-137893637:-|nuORF REV__ENST00000463982.2_1_3:137890290-137893637:-|nuORF MSMS UPN47_class_I_Rep_2 3 494.22760009765625 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 33.154 1 36.609 36.109 37.109 3.4547 0 0 0 0.4029 1 5837 5837 0 0 1 + 10969 19267 6793 6799 13630 13630 0.0735168091163132 GRREVGVP 8 Unmodified _GRREVGVP_ 0 0 0 L1MD1_dup3717|chr9:114351873-114352315:+|2.189987587637017|0.1318920426424355|4.05|151.0|19|3|sense L1MD1_dup3717|chr9:114351873-114352315:+|2.189987587637017|0.1318920426424355|4.05|151.0|19|3|sense L1MD1_dup3717|chr9:114351873-114352315:+|2.189987587637017|0.1318920426424355|4.05|151.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 435.2509765625 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 76.76 1 76.76 76.26 77.26 0 0 0 0 0.40581 1 17923 17923 2.8892 0 1 10970 11935 6794 6800 13631 13631 0.04839453677379879 GRREVRAGGPR 11 Unmodified _GRREVRAGGPR_ 0 0 0 ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF MSMS UPN47_class_I_Rep_3 4 404.2326965332031 3 404.234038 1209.68028 NaN NaN NaN NaN NaN NaN NaN 75.925 1 79.182 78.682 79.682 3.2573 0 0 0 0.38417 1 18859 18859 2.2527 0.66045 1 10971 6084 6795 6801 13632 13632 0.0838316907738772 GRRGLRAPPL 10 Unmodified _GRRGLRAPPL_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MSMS UPN48_class_I_Rep_3 7 546.8396606445312 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.418 1 96.296 95.796 96.796 3.8782 0 0 0 0.53105 1 21909 21909 10.074 2.1638 1 10972 4830 6796 6802 13633 13633 0.12542757685150718 GRRGRLSVP 9 Unmodified _GRRGRLSVP_ 0 0 0 REV__ENST00000458587.6_1_X:152989216-152989369:-|nuORF REV__ENST00000458587.6_1_X:152989216-152989369:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 499.8092956542969 2 499.304324 996.594095 0.18701 9.3376E-05 2.1657 0.0010814 2.3528 0.0011747 499.30295452536285 107.58 0.13018 111.21 111.17 111.3 3.6313 35 16 3 0 0 0 0.15122 1 25933 25933 25.399 2.663 1 2525300 + 10973 22417 6797 6803 13634 13634 0.09566209242700552 GRRGRLSVP 9 Unmodified _GRRGRLSVP_ 0 0 0 REV__ENST00000458587.6_1_X:152989216-152989369:-|nuORF REV__ENST00000458587.6_1_X:152989216-152989369:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 499.304324 996.594095 0.2965 0.00014805 3.8214 0.0019081 4.1179 0.0020561 499.3061490655874 107.97 0.21516 111.61 111.47 111.68 3.6355 0.19763 0.00043973 NaN 25.399 17 13 3 NaN NaN NaN NaN 0 NaN NaN 0 265290 + 10974 22417 6797 6803 0.09566209242700552 GRRGVWIL 8 Unmodified _GRRGVWIL_ 0 0 0 MLT1A0_dup14458|chr11:66651661-66651988:-|1.8530700268055464|0.1126064611224243|4.04|151.0|19|3|anti-sense MLT1A0_dup14458|chr11:66651661-66651988:-|1.8530700268055464|0.1126064611224243|4.04|151.0|19|3|anti-sense MLT1A0_dup14458|chr11:66651661-66651988:-|1.8530700268055464|0.1126064611224243|4.04|151.0|19|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.97503662109375 2 478.793061 955.571569 0.071217 3.4098E-05 -1.8626 -0.00089179 -1.7914 -0.00085769 478.79202146127545 54.156 0.43139 57.725 57.45 57.881 3.5694 39 25 2 0 0 0 0.72333 1 11331 11331 4.756 0 1 86774 10975 16249 6798 6804 13635 13635 0.09200609845083818 GRRHEAFA 8 Unmodified _GRRHEAFA_ 0 0 0 ENST00000605849.1_1_4:96470971-96471193:+|nuORF ENST00000605849.1_1_4:96470971-96471193:+|nuORF ENST00000605849.1_1_4:96470971-96471193:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.2474670410156 2 472.246475 942.478397 NaN NaN NaN NaN NaN NaN NaN 42.956 1 46.466 45.966 46.966 3.5103 0 0 0 0.40604 1 8007 8007 2.5775 0.27475 1 10976 7677 6799 6805 13636 13636 0.004856853918340676 GRRIDKKK 8 Unmodified _GRRIDKKK_ 0 0 0 REV__ENST00000461516.5_1_2:190554359-190560904:+|nuORF REV__ENST00000461516.5_1_2:190554359-190560904:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.82061767578125 2 500.82235 999.630147 NaN NaN NaN NaN NaN NaN NaN 106.88 1 110.51 110.01 111.01 3.6299 0 0 0 0.40746 1 25746 25746 0.69038 0.16561 1 + 10977 19664 6800 6806 13637 13637 0.13031666419556132 GRRINIRQNR 10 Unmodified _GRRINIRQNR_ 0 0 0 L1M5_dup21817|chr6:156130644-156131144:-|1.9936190119014363|0.0326878038040799|5.93|147.0|9|2|sense L1M5_dup21817|chr6:156130644-156131144:-|1.9936190119014363|0.0326878038040799|5.93|147.0|9|2|sense L1M5_dup21817|chr6:156130644-156131144:-|1.9936190119014363|0.0326878038040799|5.93|147.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 641.8823852539062 2 641.881793 1281.74903 0.65242 0.00041878 0.96644 0.00062034 1.6189 0.0010391 641.8822305227612 89.127 0.3238 92.956 92.879 93.203 3.8293 73 40 2 0 0 0 0.56486 1 21133 21133 0.40072 0.40072 1 201460 10978 9112 6801 6807 13638 13638 0.11942833377111128 GRRKGTKGPI 10 Unmodified _GRRKGTKGPI_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3-2|CECR2 REV__nc|ENSG00000099954|Q9BXF3-2|CECR2 MSMS UPN48_class_I_Rep_3 7 535.33544921875 2 535.333082 1068.65161 NaN NaN NaN NaN NaN NaN NaN 109.03 1 112.7 112.2 113.2 3.6751 0 0 0 0.53105 1 25870 25870 12.241 2.1667 1 + 10979 18079 6802 6808 13639 13639 0.12003051448277802 GRRKTPARR 9 Unmodified _GRRKTPARR_ 0 0 0 ENST00000404976.5_1_2:37571756-37586754:+|nuORF;ENST00000338415.7_1_2:37571723-37579999:+|nuORF ENST00000404976.5_1_2:37571756-37586754:+|nuORF ENST00000404976.5_1_2:37571756-37586754:+|nuORF MSMS UPN46_class_I_Rep_3 1 549.3434448242188 2 549.341772 1096.66899 NaN NaN NaN NaN NaN NaN NaN 108 1 108 107.5 108.5 0 0 0 0 0.15455 1 26365 26365 19.257 2.1441 1 10980 6219 6803 6809 13640 13640 0.12452391773899762 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 597.8568115234375 2 597.856921 1193.69929 0.5754 0.000344 -0.8571 -0.00051242 -0.28171 -0.00016842 597.8562716397298 88.718 0.17508 88.718 88.574 88.749 0 36 20 2 0 0 0 0.56118 1 21283 21283 2.9952 0 1 680560 + 10981 19770 6804 6810 13641 13641 0.11018705648439209 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 597.8571166992188 2 597.856921 1193.69929 0.42817 0.00025599 -0.94054 -0.00056231 -0.51237 -0.00030632 597.8562448062568 85.559 0.2514 89.165 89.081 89.333 3.6059 51 28 2 0 0 0 0.54822 1 20455 20455 5.7319 0.83484 1 246350 + 10982 19770 6804 6810 13642 13642 0.11018705648439209 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 597.8564453125 2 597.856921 1193.69929 0.55476 0.00033167 -1.22 -0.00072936 -0.6652 -0.0003977 597.8559897155515 85.032 0.10422 88.781 88.734 88.838 3.7493 24 15 2 0 0 0 0.54822 1 20173 20173 5.7319 0.97584 1 381890 + 10983 19770 6804 6810 13643 13643 0.11018705648439209 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 597.856921 1193.69929 0.57621 0.00034449 -0.98883 -0.00059118 -0.41262 -0.00024669 597.8561667166589 89.165 0.19302 89.165 89.071 89.264 0 0.034648 -0.00014413 NaN 5.7319 41 20 4 NaN NaN NaN NaN 0 NaN NaN 0 734030 + 10984 19770 6804 6810 0.11018705648439209 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 597.856921 1193.69929 0.46363 0.00027718 -0.89544 -0.00053535 -0.43182 -0.00025816 597.856191963157 85.15 0.58729 88.741 88.608 89.195 3.5914 0.0039524 0.00012336 NaN 5.7319 147 83 2 NaN NaN NaN NaN 0 NaN NaN 0 266920 + 10985 19770 6804 6810 0.11018705648439209 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 597.856921 1193.69929 0.55397 0.0003312 -1.1013 -0.00065839 -0.54729 -0.0003272 597.8560639755899 85.297 1.283 88.73 88.615 89.898 3.4329 -0.007232 -0.00012273 NaN 5.7319 231 173 2 NaN NaN NaN NaN 0 NaN NaN 0 300300 + 10986 19770 6804 6810 0.11018705648439209 GRRLETRPPI 10 Unmodified _GRRLETRPPI_ 0 0 0 REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 597.856921 1193.69929 0.48346 0.00028904 -1.0015 -0.00059878 -0.51808 -0.00030974 597.8560989542092 85.022 0.71916 88.716 88.568 89.288 3.6937 -0.021719 -3.4911E-06 NaN 5.7319 145 98 2 NaN NaN NaN NaN 0 NaN NaN 0 468780 + 10987 19770 6804 6810 0.11018705648439209 GRRLVILEAH 10 Unmodified _GRRLVILEAH_ 0 0 0 REV__ENSG00000115488|ENST00000233840|NEU2 REV__ENSG00000115488|ENST00000233840|NEU2 MULTI-MSMS UPN48_class_I_Rep_3 7 582.3534545898438 2 582.354014 1162.69348 0.49239 0.00028675 -1.059 -0.00061673 -0.56664 -0.00032999 582.3531982033733 102.22 0.02948 105.99 105.98 106.01 3.776 4 2 2 0 0 0 0.56333 1 24159 24159 1.4819 0 1 110920 + 10988 18568 6805 6811 13644 13644 0.1186360713677459 GRRNARTR 8 Unmodified _GRRNARTR_ 0 0 0 nc|ENSG00000196220|O43295-2|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 MSMS UPN47_class_I_Rep_2 3 493.7893981933594 2 493.789373 985.564192 NaN NaN NaN NaN NaN NaN NaN 118.98 1 122.46 121.96 122.96 3.4793 0 0 0 0.40746 1 29132 29132 0.69038 0 1 10989 16790 6806 6812 13645 13645 0.07083270297357558 GRRNVLVNFK 10 Unmodified _GRRNVLVNFK_ 0 0 0 REV__MER5A1_dup11056|chr12:26991906-26992068:-|1.0481033146682612|0.0430425254723863|4.61|150.0|16|3|anti-sense REV__MER5A1_dup11056|chr12:26991906-26992068:-|1.0481033146682612|0.0430425254723863|4.61|150.0|16|3|anti-sense MSMS UPN48_class_I_Rep_3 7 601.8589477539062 2 601.859464 1201.70437 NaN NaN NaN NaN NaN NaN NaN 94.912 1 98.814 98.314 99.314 3.9016 0 0 0 0.53105 1 22493 22493 1.4819 0.15237 1 + 10990 31476 6807 6813 13646 13646 0.11159009511038676 GRRQKGPAPAL 11 Unmodified _GRRQKGPAPAL_ 0 0 0 REV__HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense REV__HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_1 2 575.843505859375 2 575.843813 1149.67307 NaN NaN NaN NaN NaN NaN NaN 83.577 1 87.115 86.615 87.615 3.5386 0 0 0 0.38417 1 20904 20904 2.9952 1.151 1 + 10991 23654 6808 6814 13647 13647 0.10422436476983421 GRRRKKKHKK 10 Unmodified _GRRRKKKHKK_ 0 0 0 REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN46_class_I_Rep_3 1 441.29754638671875 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 35.054 1 35.054 34.554 35.554 0 0 0 0 0.53105 1 6336 6336 0.13989 0.04505 1 + 10992 18539 6809 6815 13648 13648 0.22148866441511927 GRRRKKKHKK 10 Unmodified _GRRRKKKHKK_ 0 0 0 REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN47_class_I_Rep_1 2 441.2976379394531 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 41.686 1 45.365 44.865 45.865 3.6792 0 0 0 0.53105 1 8396 8396 0.13989 0.04505 1 + 10993 18539 6809 6815 13649 13649 0.22148866441511927 GRRRKKKHKK 10 Unmodified _GRRRKKKHKK_ 0 0 0 REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN47_class_I_Rep_3 4 441.29730224609375 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 66.89 1 70.081 69.581 70.581 3.1914 0 0 0 0.53105 1 16163 16163 0.15932 0.064481 1 + 10994 18539 6809 6815 13650 13650 0.22148866441511927 GRRRKKKHKK 10 Unmodified _GRRRKKKHKK_ 0 0 0 REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_2 6 441.29766845703125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 64.344 1 67.818 67.318 68.318 3.4743 0 0 0 0.53105 1 14539 14539 0.13989 0.04505 1 + 10995 18539 6809 6815 13651 13651 0.22148866441511927 GRRRKKKHKK 10 Unmodified _GRRRKKKHKK_ 0 0 0 REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron REV__ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_3 7 441.2974548339844 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 59.319 1 62.843 62.343 63.343 3.5231 0 0 0 0.53105 1 12937 12937 0.13989 0.04505 1 + 10996 18539 6809 6815 13652 13652 0.22148866441511927 GRRRQLLRR 9 Unmodified _GRRRQLLRR_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS UPN48_class_I_Rep_2 6 404.2632751464844 3 404.262039 1209.76429 NaN NaN NaN NaN NaN NaN NaN 69.876 1 73.398 72.898 73.898 3.5216 0 0 0 0.39841 1 16217 16217 1.0715 0.29493 1 10997 5784 6810 6816 13653 13653 0.16779744964969723 GRRRRRGF 8 Unmodified _GRRRRRGF_ 0 0 0 ENST00000263655.3_1_2:68546479-68546713:-|nuORF ENST00000263655.3_1_2:68546479-68546713:-|nuORF ENST00000263655.3_1_2:68546479-68546713:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 530.8211669921875 2 530.821007 1059.62746 0.26893 0.00014275 0.28477 0.00015116 0.5537 0.00029392 530.8211754742023 75.85 0.59828 79.172 78.942 79.54 3.3216 88 59 3 0 0 0 0.82752 1 18820 18820 0.79363 0 1 261850 10998 5982 6811 6817 13654 13654 0.10003255805258959 GRRRWRRAR 9 Unmodified _GRRRWRRAR_ 0 0 0 REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF MSMS UPN46_class_I_Rep_3 1 635.3838500976562 2 635.384837 1268.75512 NaN NaN NaN NaN NaN NaN NaN 84.217 1 84.217 83.717 84.717 0 0 0 0 0.4007 1 20026 20026 0.52476 0 1 + 10999 22911 6812 6818 13655 13655 0.1314939639930799 GRRTRTKL 8 Unmodified _GRRTRTKL_ 0 0 0 REV__ENSG00000160471|ENST00000326529|COX6B2 REV__ENSG00000160471|ENST00000326529|COX6B2 MSMS UPN47_class_I_Rep_1 2 494.311279296875 2 494.312149 986.609745 NaN NaN NaN NaN NaN NaN NaN 69.91 1 73.278 72.778 73.778 3.3678 0 0 0 0.40753 1 16965 16965 0.6015 0 1 + 11000 19887 6813 6819 13656 13656 0.11590495759730857 GRRTRTKL 8 Unmodified _GRRTRTKL_ 0 0 0 REV__ENSG00000160471|ENST00000326529|COX6B2 REV__ENSG00000160471|ENST00000326529|COX6B2 MSMS UPN47_class_I_Rep_1 2 494.3110046386719 2 494.312149 986.609745 NaN NaN NaN NaN NaN NaN NaN 69.946 1 73.318 72.818 73.818 3.3713 0 0 0 0.40753 1 16976 16976 0.6015 0 1 + 11001 19887 6813 6819 13657 13657 0.11590495759730857 GRRTRTKL 8 Unmodified _GRRTRTKL_ 0 0 0 REV__ENSG00000160471|ENST00000326529|COX6B2 REV__ENSG00000160471|ENST00000326529|COX6B2 MSMS UPN47_class_I_Rep_1 2 494.7184753417969 2 494.312149 986.609745 NaN NaN NaN NaN NaN NaN NaN 70.022 1 73.394 72.894 73.894 3.3713 0 0 0 0.40753 1 16999 16999 0.6015 0 1 + 11002 19887 6813 6819 13658 13658 0.11590495759730857 GRRTRTKL 8 Unmodified _GRRTRTKL_ 0 0 0 REV__ENSG00000160471|ENST00000326529|COX6B2 REV__ENSG00000160471|ENST00000326529|COX6B2 MSMS UPN47_class_I_Rep_2 3 494.3116760253906 2 494.312149 986.609745 NaN NaN NaN NaN NaN NaN NaN 70.163 1 73.446 72.946 73.946 3.2828 0 0 0 0.40753 1 17079 17079 0.6015 0 1 + 11003 19887 6813 6819 13659 13659 0.11590495759730857 GRRTRTKL 8 Unmodified _GRRTRTKL_ 0 0 0 REV__ENSG00000160471|ENST00000326529|COX6B2 REV__ENSG00000160471|ENST00000326529|COX6B2 MSMS UPN47_class_I_Rep_3 4 494.31024169921875 2 494.312149 986.609745 NaN NaN NaN NaN NaN NaN NaN 70.33 1 73.541 73.041 74.041 3.2113 0 0 0 0.40753 1 17198 17198 0.6015 0 1 + 11004 19887 6813 6819 13660 13660 0.11590495759730857 GRRTSKAQRV 10 Unmodified _GRRTSKAQRV_ 0 0 0 ENSG00000198547|ENST00000608990|C20orf203 ENSG00000198547|ENST00000608990|C20orf203 ENSG00000198547|ENST00000608990|C20orf203 MULTI-MSMS UPN48_class_I_Rep_1 5 579.8443603515625 2 579.844345 1157.67414 0.40419 0.00023437 0.052667 3.0539E-05 0.45685 0.0002649 579.8443450903954 93.578 0.45816 97.198 96.991 97.449 3.6208 68 53 2 0 0 0 0.56374 1 22526 22526 1.1933 0.66858 1 135220 11005 5438 6814 6820 13661 13661 0.10160650845864438 GRRVAVGRRA 10 Unmodified _GRRVAVGRRA_ 0 0 0 REV__ENST00000269346.8_1_17:72256577-72256817:+|nuORF REV__ENST00000269346.8_1_17:72256577-72256817:+|nuORF MSMS UPN46_class_I_Rep_3 1 549.343994140625 2 549.341772 1096.66899 NaN NaN NaN NaN NaN NaN NaN 108.13 1 108.13 107.63 108.63 0 0 0 0 0.53105 1 26421 26421 13.906 0 1 + 11006 21604 6815 6821 13662 13662 0.124523917739225 GRRWIVAV 8 Unmodified _GRRWIVAV_ 0 0 0 REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.7925720214844 2 478.793061 955.571569 -0.18053 -8.6438E-05 -1.6979 -0.00081293 -1.8784 -0.00089937 478.7920464410764 44.41 0.48447 48.105 47.817 48.302 3.6951 51 33 2 0 0 0 0.82752 1 9174 9174 8.5933 0 1 47103 + 11007 29031 6816 6822 13663 13663 0.0920060984507245 GRRWIVAV 8 Unmodified _GRRWIVAV_ 0 0 0 REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 479.30914306640625 2 478.793061 955.571569 -0.18053 -8.6438E-05 -1.6979 -0.00081293 -1.8784 -0.00089937 478.7920464410764 44.41 0.48447 48.105 47.817 48.302 3.6951 51 33 2 0 0 0 0.72333 1 9275 9275 5.2307 0 1 47103 + 11008 29031 6816 6822 13664 13664 0.0920060984507245 GRRWIVAV 8 Unmodified _GRRWIVAV_ 0 0 0 REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense MSMS UPN47_class_I_Rep_2 3 478.7917785644531 2 478.793061 955.571569 NaN NaN NaN NaN NaN NaN NaN 44.628 1 47.983 47.483 48.483 3.3556 0 0 0 0.39819 1 9325 9325 8.5933 0 1 + 11009 29031 6816 6822 13665 13665 0.0920060984507245 GRRWIVAV 8 Unmodified _GRRWIVAV_ 0 0 0 REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense MSMS UPN47_class_I_Rep_2 3 478.7921447753906 2 478.793061 955.571569 NaN NaN NaN NaN NaN NaN NaN 44.769 1 48.124 47.624 48.624 3.3556 0 0 0 0.38547 1 9369 9369 13.508 0 1 + 11010 29031 6816 6822 13666 13666 0.0920060984507245 GRSKKVKW 8 Unmodified _GRSKKVKW_ 0 0 0 REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|152|3|sense REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|152|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.8056945800781 2 494.806168 987.597784 -0.27635 -0.00013674 -1.3102 -0.00064829 -1.5865 -0.00078503 494.8053897966269 33.439 0.5593 37.137 36.864 37.423 3.6983 47 36 2 0 0 0 0.82752 1 5887 5887 2.3027 2.3027 1 45241 + 11011 29831 6817 6823 13667 13667 0.10348879016555657 GRSKKVKW 8 Unmodified _GRSKKVKW_ 0 0 0 REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|152|3|sense REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|152|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 494.7560729980469 2 494.806168 987.597784 -0.13248 -6.5552E-05 -0.93473 -0.00046251 -1.0672 -0.00052806 494.80570865934334 33.675 0.49523 37.115 36.91 37.406 3.4398 47 30 2 0 0 0 0.72333 1 6078 6078 2.3027 2.3027 1 59699 + 11012 29831 6817 6823 13668 13668 0.10348879016555657 GRTPTLPVR 9 Unmodified _GRTPTLPVR_ 0 0 0 REV__ENSG00000136205.17,TNS3,chr7,-,I28.1,47345039,47346186|27|9.7|2|intron REV__ENSG00000136205.17,TNS3,chr7,-,I28.1,47345039,47346186|27|9.7|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 498.80108642578125 2 498.801083 995.587613 0.032407 1.6165E-05 0.0092245 4.6012E-06 0.041632 2.0766E-05 498.80101549175623 29.272 0.69331 29.272 29.01 29.703 0 92 62 2 0 0 0 0.40701 2 4565 4565;4687 7.609 0 1 125690 + 11013 19176 6818 6824 13669;13670 13669 0.0896427129133599 GRTRPLAA 8 Unmodified _GRTRPLAA_ 0 0 0 REV__nc|ENSG00000073417|O60658-4|PDE8A REV__nc|ENSG00000073417|O60658-4|PDE8A MULTI-MSMS UPN46_class_I_Rep_3 1 421.2540283203125 2 421.253769 840.492984 0.078315 3.2991E-05 0.085755 3.6125E-05 0.16407 6.9115E-05 421.2537442434023 78.473 0.64907 78.473 78.171 78.82 0 103 70 2 0 0 0 0.82752 1 18339 18339 2.5775 0 1 245430 + 11014 17838 6819 6825 13671 13671 0.06635757539982023 GRTRPLAA 8 Unmodified _GRTRPLAA_ 0 0 0 REV__nc|ENSG00000073417|O60658-4|PDE8A REV__nc|ENSG00000073417|O60658-4|PDE8A MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 421.253769 840.492984 -0.0056181 -2.3666E-06 0.16662 7.0187E-05 0.161 6.7821E-05 421.2537357978555 75.304 0.50465 78.707 78.453 78.958 3.4034 0.092291 -7.5493E-05 NaN 2.5775 62 45 2 NaN NaN NaN NaN 0 NaN NaN 0 66967 + 11015 17838 6819 6825 0.06635757539982023 GRTRPLAA 8 Unmodified _GRTRPLAA_ 0 0 0 REV__nc|ENSG00000073417|O60658-4|PDE8A REV__nc|ENSG00000073417|O60658-4|PDE8A MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 421.253769 840.492984 -0.53236 -0.00022426 0.64909 0.00027343 0.11673 4.9175E-05 421.25392033929666 75.371 0.29521 78.683 78.489 78.784 3.3127 0.068637 0.000331 NaN 2.5775 38 25 2 NaN NaN NaN NaN 0 NaN NaN 0 78660 + 11016 17838 6819 6825 0.06635757539982023 GRTRPLAA 8 Unmodified _GRTRPLAA_ 0 0 0 REV__nc|ENSG00000073417|O60658-4|PDE8A REV__nc|ENSG00000073417|O60658-4|PDE8A MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 421.253769 840.492984 -0.084206 -3.5472E-05 0.47404 0.00019969 0.38984 0.00016422 421.25390610129216 75.138 0.39552 78.628 78.541 78.937 3.49 0.013494 0.00018352 NaN 2.5775 59 39 2 NaN NaN NaN NaN 0 NaN NaN 0 130760 + 11017 17838 6819 6825 0.06635757539982023 GRTWLLVL 8 Unmodified _GRTWLLVL_ 0 0 0 ENST00000361813.5_1_1:156246878-156247780:-|nuORF ENST00000361813.5_1_1:156246878-156247780:-|nuORF ENST00000361813.5_1_1:156246878-156247780:-|nuORF MSMS UPN47_class_I_Rep_3 4 479.2955017089844 2 479.297645 956.580737 NaN NaN NaN NaN NaN NaN NaN 17.455 1 20.813 20.313 21.313 3.3581 0 0 0 0.40738 1 1279 1279 0.79363 0 1 11018 6334 6820 6826 13672 13672 0.10070958410744879 GRVFRKVF 8 Unmodified _GRVFRKVF_ 0 0 0 L1MEc_dup11808|chr10:38046186-38046902:+|1.734393857363983|0.1218566524287636|3.83|151.0|22|3|sense L1MEc_dup11808|chr10:38046186-38046902:+|1.734393857363983|0.1218566524287636|3.83|151.0|22|3|sense L1MEc_dup11808|chr10:38046186-38046902:+|1.734393857363983|0.1218566524287636|3.83|151.0|22|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 504.3224182128906 2 504.808711 1007.60287 0.30871 0.00015584 0.24657 0.00012447 0.55528 0.00028031 504.8087235446194 109.5 0.83273 113.03 112.98 113.82 3.5347 255 120 3 0 0 0 0.72333 1 27022 27022 2.3027 2.3027 1 4769800 11019 13008 6821 6827 13673 13673 0.09937182879173179 GRVITVFNF 9 Unmodified _GRVITVFNF_ 0 0 0 L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|60|1|anti-sense L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|60|1|anti-sense L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 526.7965698242188 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.744 1 27.31 26.81 27.81 3.5655 0 0 0 0.38299 1 2520 2520 4.756 0.42677 1 11020 10399 6822 6828 13674 13674 0.05773753059793307 GRVMGIRVL 9 Unmodified _GRVMGIRVL_ 0 0 0 ENSG00000162694|ENST00000370114|EXTL2 ENSG00000162694|ENST00000370114|EXTL2 ENSG00000162694|ENST00000370114|EXTL2 MSMS UPN47_class_I_Rep_2 3 500.765625 2 500.807854 999.601155 NaN NaN NaN NaN NaN NaN NaN 32.074 1 35.543 35.043 36.043 3.4691 0 0 0 0.39518 1 5511 5511 1.8442 1.0506 1 11021 3950 6823 6829 13675 13675 0.10133805798921003 GRVRKLEI 8 Unmodified _GRVRKLEI_ 0 0 0 REV__Tigger1_dup6983|chr9:79601369-79603706:+|4.304389953643058|0.0585170043812896|6.2|151.0|123|2|anti-sense REV__Tigger1_dup6983|chr9:79601369-79603706:+|4.304389953643058|0.0585170043812896|6.2|151.0|123|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8120422363281 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 58.088 1 61.525 61.025 62.025 3.437 0 0 0 0.40746 1 13386 13386 0.69038 0 1 + 11022 32512 6824 6830 13676 13676 0.12232861670975126 GRVRKLEI 8 Unmodified _GRVRKLEI_ 0 0 0 REV__Tigger1_dup6983|chr9:79601369-79603706:+|4.304389953643058|0.0585170043812896|6.2|151.0|123|2|anti-sense REV__Tigger1_dup6983|chr9:79601369-79603706:+|4.304389953643058|0.0585170043812896|6.2|151.0|123|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8119812011719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 107.08 1 110.61 110.11 111.11 3.5345 0 0 0 0.40625 1 25909 25909 2.3027 0 1 + 11023 32512 6824 6830 13677 13677 0.12232861670975126 GRWKQPKR 8 Unmodified _GRWKQPKR_ 0 0 0 L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|10|2|sense L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|10|2|sense L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 528.3142700195312 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 93.398 1 93.398 92.898 93.898 0 0 0 0 0.40746 1 22634 22634 0.69038 0 1 11024 10519 6825 6831 13678 13678 0.08970799622352388 GRWKQPKR 8 Unmodified _GRWKQPKR_ 0 0 0 L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|10|2|sense L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|10|2|sense L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 528.31396484375 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.393 1 93.222 92.722 93.722 3.8293 0 0 0 0.40746 1 21219 21219 0.69038 0 1 11025 10519 6825 6831 13679 13679 0.08970799622352388 GRWWMQRR 8 Unmodified _GRWWMQRR_ 0 0 0 REV__nc|ENSG00000117533|O75379-2|VAMP4 REV__nc|ENSG00000117533|O75379-2|VAMP4 MSMS UPN47_class_I_Rep_2 3 588.3038940429688 2 588.303801 1174.59305 NaN NaN NaN NaN NaN NaN NaN 25.732 1 29.226 28.726 29.726 3.4945 0 0 0 0.40746 1 3618 3618 0.69038 0 1 + 11026 18639 6826 6832 13680 13680 0.01273671602120885 GRYRFIILIT 10 Unmodified _GRYRFIILIT_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN48_class_I_Rep_1 5 626.3796997070312 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 99.31 1 102.92 102.42 103.42 3.6065 0 0 0 0.53105 1 23976 23976 1.6526 0 1 + 11027 19248 6827 6833 13681 13681 0.13458234973472827 GRYRFIILIT 10 Unmodified _GRYRFIILIT_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN48_class_I_Rep_1 5 626.3843994140625 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 99.87 1 103.48 102.98 103.98 3.6065 0 0 0 0.53105 1 24114 24114 1.6526 0 1 + 11028 19248 6827 6833 13682 13682 0.13458234973472827 GRYRFIILIT 10 Unmodified _GRYRFIILIT_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN48_class_I_Rep_2 6 626.383056640625 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 99.198 1 102.97 102.47 103.47 3.7707 0 0 0 0.53105 1 23560 23560 1.6526 0 1 + 11029 19248 6827 6833 13683 13683 0.13458234973472827 GRYRFIILIT 10 Unmodified _GRYRFIILIT_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN48_class_I_Rep_2 6 626.3829345703125 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 99.634 1 103.39 102.89 103.89 3.7575 0 0 0 0.53105 1 23661 23661 1.6526 0 1 + 11030 19248 6827 6833 13684 13684 0.13458234973472827 GSASIGSAYAY 11 Unmodified _GSASIGSAYAY_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|272|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|272|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|272|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.2261962890625 2 523.743096 1045.47164 0.026336 1.3793E-05 -0.60286 -0.00031574 -0.57653 -0.00030195 523.7428717327205 45.072 0.57262 48.772 48.553 49.125 3.6999 53 33 2 0 0 0 0.4608 1 9477 9477 8.7454 1.4562 1 82637 11031 7995 6828 6834 13685 13685 -0.04927717070063409 GSASIGSAYAY 11 Unmodified _GSASIGSAYAY_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|272|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|272|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|272|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.2261352539062 2 523.743096 1045.47164 0.14428 7.5567E-05 -0.70166 -0.00036749 -0.55738 -0.00029192 523.742661481742 45.563 0.67034 48.807 48.525 49.196 3.2441 57 41 2 0 0 0 0.32821 1 9638 9638 13.042 1.4022 1 97034 11032 7995 6828 6834 13686 13686 -0.04927717070063409 GSDDTELRY 9 Unmodified _GSDDTELRY_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.236083984375 2 528.235635 1054.45672 -0.10494 -5.5433E-05 0.2542 0.00013428 0.14926 7.8843E-05 528.2356416736387 32.228 0.5323 35.941 35.728 36.26 3.7131 67 43 2 0 0 0 0.12096 3 5513 5513;5554;5570 29.841 12.362 1 107160 11033 5773 6829 6835 13687;13688;13689 13687 -0.06833208938041935 GSDDTELRY 9 Unmodified _GSDDTELRY_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 528.235595703125 2 528.235635 1054.45672 -0.2245 -0.00011859 0.68272 0.00036064 0.45822 0.00024205 528.2358663477526 32.477 0.51647 35.931 35.656 36.172 3.4547 58 36 2 0 0 0 0.066364 2 5614 5614;5656 41.956 21.502 1 101650 11034 5773 6829 6835 13690;13691 13690 -0.06833208938041935 GSDDTELRY 9 Unmodified _GSDDTELRY_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.2354736328125 2 528.235635 1054.45672 -0.22085 -0.00011666 0.69594 0.00036762 0.47509 0.00025096 528.2357988813321 32.721 0.63006 36.008 35.649 36.279 3.2867 70 47 2 0 0 0 0.13455 3 5713 5674;5713;5753 27.223 16.399 1 126290 11035 5773 6829 6835 13692;13693;13694 13693 -0.06833208938041935 GSDEREAL 8 Unmodified _GSDEREAL_ 0 0 0 REV__ENST00000466133.1_1_3:159819443-159820214:+|nuORF REV__ENST00000466133.1_1_3:159819443-159820214:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 438.70660400390625 2 438.706514 875.398475 -0.45339 -0.0001989 0.53849 0.00023624 0.085102 3.7335E-05 438.7066246561738 18.478 1.0401 22.058 21.614 22.654 3.5806 198 124 2 0 0 0 0.82752 1 1512 1512 15.847 0 1 100700 + 11036 22473 6830 6836 13695 13695 -0.04420845792651562 GSDEREAL 8 Unmodified _GSDEREAL_ 0 0 0 REV__ENST00000466133.1_1_3:159819443-159820214:+|nuORF REV__ENST00000466133.1_1_3:159819443-159820214:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 438.706514 875.398475 -0.71057 -0.00031173 0.78827 0.00034582 0.077697 3.4086E-05 438.706731024192 18.771 0.96625 22.161 21.761 22.728 3.3898 0.051561 0.00011744 NaN 15.847 174 105 2 NaN NaN NaN NaN 0 NaN NaN 0 89048 + 11037 22473 6830 6836 -0.04420845792651562 GSDKINYTY 9 Unmodified _GSDKINYTY_ 0 0 0 nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF nc|ENSG00000186416|O15226|NKRF nc|ENSG00000186416|O15226|NKRF MULTI-SECPEP UPN47_class_I_Rep_2 3 531.3084106445312 2 530.750921 1059.48729 -0.14962 -7.941E-05 0.57839 0.00030698 0.42878 0.00022757 531.2529277911791 33.755 0.48825 37.195 36.94 37.429 3.4398 49 29 2 0 0 0 0.11642 1 6041 6041 12.241 12.241 1 53556 11038 5154 6831 6837 13696 13696 -0.040074305529969934 GSDKINYTY 9 Unmodified _GSDKINYTY_ 0 0 0 nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF nc|ENSG00000186416|O15226|NKRF nc|ENSG00000186416|O15226|NKRF MULTI-MSMS UPN47_class_I_Rep_3 4 530.7506103515625 2 530.750921 1059.48729 -0.18388 -9.7595E-05 0.51653 0.00027415 0.33265 0.00017656 530.7507570024042 33.869 0.40689 37.144 37.007 37.414 3.2748 55 29 2 0 0 0 0.31407 1 6131 6131 13.042 0.51092 1 66941 11039 5154 6831 6837 13697 13697 -0.040074305529969934 GSDPRVTQL 9 Unmodified _GSDPRVTQL_ 0 0 0 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron;ENSG00000150977|ENST00000280571|RILPL2 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 486.7585754394531 2 486.759081 971.503609 -0.30058 -0.00014631 0.074446 3.6237E-05 -0.22613 -0.00011007 486.7590963531658 31.603 0.66583 35.332 35.032 35.698 3.7293 102 48 3 0 0 0 0.061655 2 5291 5291;5331 43.982 9.5801 1 235120 11040 3572 6832 6838 13698;13699 13698 0.016716954037633514 GSDPRVTQL 9 Unmodified _GSDPRVTQL_ 0 0 0 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron;ENSG00000150977|ENST00000280571|RILPL2 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 486.75885009765625 2 486.759081 971.503609 -0.14892 -7.2488E-05 -0.092343 -4.4949E-05 -0.24126 -0.00011744 486.7589952355773 31.758 0.66741 35.227 34.949 35.616 3.4691 110 50 3 0 0 0 0.061655 1 5410 5410 43.982 9.5801 1 237150 11041 3572 6832 6838 13700 13700 0.016716954037633514 GSDPRVTQL 9 Unmodified _GSDPRVTQL_ 0 0 0 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron;ENSG00000150977|ENST00000280571|RILPL2 ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron ENSG00000150977.10,RILPL2,chr12,-,I1.1,123430660,123436081|28|25.49|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 486.7587890625 2 486.759081 971.503609 -0.44273 -0.0002155 0.1771 8.6203E-05 -0.26563 -0.0001293 486.7591169584895 31.96 0.74907 35.259 34.927 35.676 3.2991 128 58 3 0 0 0 0.061655 1 5519 5519 43.982 9.5801 1 206470 11042 3572 6832 6838 13701 13701 0.016716954037633514 GSDSETRRL 9 Unmodified _GSDSETRRL_ 0 0 0 REV__nc|ENSG00000170776|Q12802-4|AKAP13 REV__nc|ENSG00000170776|Q12802-4|AKAP13 MSMS UPN48_class_I_Rep_3 7 510.76007080078125 2 510.757069 1019.49959 NaN NaN NaN NaN NaN NaN NaN 53.524 1 57.108 56.608 57.608 3.5836 0 0 0 0.25702 1 11165 11165 13.042 1.5478 1 + 11043 20378 6833 6839 13702 13702 -0.009383940899283516 GSDSVVLYLY 10 Unmodified _GSDSVVLYLY_ 0 0 0 REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 558.2841796875 2 558.284597 1114.55464 0.43363 0.00024209 -0.45753 -0.00025543 -0.023903 -1.3345E-05 558.2842576694842 65.691 0.42557 68.87 68.641 69.067 3.1795 43 26 2 0 0 0 0.46161 1 15829 15829 14.838 2.5976 1 118530 + 11044 20927 6834 6840 13703 13703 0.0019459965797068435 GSDSVVLYLY 10 Unmodified _GSDSVVLYLY_ 0 0 0 REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 558.284597 1114.55464 0.43363 0.00024209 -0.45753 -0.00025543 -0.023903 -1.3345E-05 558.2842576694842 65.691 0.42557 68.87 68.641 69.067 3.1795 0.018467 6.3215E-05 NaN 14.838 43 26 2 NaN NaN NaN NaN 0 NaN NaN 0 118530 + 11045 20927 6834 6840 0.0019459965797068435 GSEEWLHCLPF 11 Unmodified _GSEEWLHCLPF_ 0 0 0 REV__nc|ENSG00000129170|P50461-2|CSRP3 REV__nc|ENSG00000129170|P50461-2|CSRP3 MULTI-MSMS UPN47_class_I_Rep_1 2 439.8687744140625 3 439.869262 1316.58596 -0.46352 -0.00020389 -0.98951 -0.00043525 -1.453 -0.00063914 439.8683175971749 14.883 0.83509 18.358 17.969 18.804 3.475 190 95 4 0 0 0 0.65674 1 691 691 2.6312 0.37851 1 193340 + 11046 31975 6835 6841 13704 13704 -0.059671505796131896 GSEEWLHCLPF 11 Unmodified _GSEEWLHCLPF_ 0 0 0 REV__nc|ENSG00000129170|P50461-2|CSRP3 REV__nc|ENSG00000129170|P50461-2|CSRP3 MULTI-MSMS UPN47_class_I_Rep_2 3 440.203369140625 3 439.869262 1316.58596 -0.69147 -0.00030416 -0.72141 -0.00031733 -1.4129 -0.00062148 439.8684226447423 15.001 1.3993 18.387 18.201 19.601 3.3864 268 162 4 0 0 0 0.65439 1 720 720 2.8433 0.59056 1 163800 + 11047 31975 6835 6841 13705 13705 -0.059671505796131896 GSEEWLHCLPF 11 Unmodified _GSEEWLHCLPF_ 0 0 0 REV__nc|ENSG00000129170|P50461-2|CSRP3 REV__nc|ENSG00000129170|P50461-2|CSRP3 MULTI-MSMS UPN47_class_I_Rep_3 4 439.86834716796875 3 439.869262 1316.58596 -1.2056 -0.00053033 -0.35282 -0.0001552 -1.5585 -0.00068552 439.8685685129115 15.075 1.2215 18.441 18.084 19.305 3.3659 236 140 4 0 0 0 0.65674 1 725 725 2.6312 1.039 1 165840 + 11048 31975 6835 6841 13706 13706 -0.059671505796131896 GSEQRLCHCT 10 Unmodified _GSEQRLCHCT_ 0 0 0 AluSz_dup31655|chr6:7238234-7238530:-|1.0712400016812167|0.051613304366336|4.38|151.0|3|1|sense AluSz_dup31655|chr6:7238234-7238530:-|1.0712400016812167|0.051613304366336|4.38|151.0|3|1|sense AluSz_dup31655|chr6:7238234-7238530:-|1.0712400016812167|0.051613304366336|4.38|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 567.246337890625 2 567.244957 1132.47536 NaN NaN NaN NaN NaN NaN NaN 35.088 1 38.513 38.013 39.013 3.4253 0 0 0 0.53105 1 6425 6425 2.7352 0 1 11049 346 6836 6842 13707 13707 -0.08557693839497915 GSFSLFPVSF 10 Unmodified _GSFSLFPVSF_ 0 0 0 REV__L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|39|3|anti-sense REV__L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|39|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 544.2770385742188 2 544.276575 1086.5386 0.43074 0.00023444 -0.47523 -0.00025866 -0.044492 -2.4216E-05 544.2764288022491 85.569 0.059509 89.175 89.157 89.217 3.6059 8 6 2 0 0 0 0.52562 1 20475 20475 8.7454 0.58988 1 61984 + 11050 28256 6837 6843 13708 13708 -0.0012106178828616976 GSFSLFPVSF 10 Unmodified _GSFSLFPVSF_ 0 0 0 REV__L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|39|3|anti-sense REV__L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|39|3|anti-sense MSMS UPN48_class_I_Rep_1 5 544.2767944335938 2 544.276575 1086.5386 NaN NaN NaN NaN NaN NaN NaN 85.455 1 89.061 88.561 89.561 3.6059 0 0 0 0.53105 1 20441 20441 8.7454 0 1 + 11051 28256 6837 6843 13709 13709 -0.0012106178828616976 GSFSQGTQ 8 Unmodified _GSFSQGTQ_ 0 0 0 REV__nc|ENSG00000174611|Q8NBH2-3|KY REV__nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MSMS UPN46_class_I_Rep_3 1 406.18255615234375 2 406.182675 810.350796 -0.40609 -0.00016495 0.23808 9.6705E-05 -0.16801 -6.8243E-05 406.1826665633863 20.389 0.99755 20.389 20.114 21.111 0 160 107 3 0 0 0 0.82752 1 2206 2206 7.2892 1.5288 1 262520 + 11052 20529 6838 6844 13710 13710 -0.061964999928363795 GSGRRSEWFR 10 Unmodified _GSGRRSEWFR_ 0 0 0 REV__ERVL-B4-int_dup2714|chr11:2293349-2294350:-|1.1623494103692027|0.0848533418190992|3.78|151.0|12|2|sense REV__ERVL-B4-int_dup2714|chr11:2293349-2294350:-|1.1623494103692027|0.0848533418190992|3.78|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 619.3133544921875 2 619.312877 1236.6112 NaN NaN NaN NaN NaN NaN NaN 64.716 1 68.224 67.724 68.724 3.5083 0 0 0 0.53105 1 14568 14568 2.9952 0 1 + 11053 23258 6839 6845 13711 13711 0.002360850578497775 GSHGETWQ 8 Unmodified _GSHGETWQ_ 0 0 0 REV__ENSG00000146555|ENST00000404826|SDK1 REV__ENSG00000146555|ENST00000404826|SDK1 MSMS UPN48_class_I_Rep_3 7 451.2625427246094 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 112.15 1 115.81 115.31 116.31 3.6614 0 0 0 0.40746 1 26639 26639 0.69038 0 1 + 11054 19545 6840 6846 13712 13712 -0.08157695244278784 GSHHLYLHPH 10 Unmodified _GSHHLYLHPH_ 0 0 0 ENSG00000103227.19,LMF1,chr16,-,I19.1,856056,868943|87|6.47|1|intron ENSG00000103227.19,LMF1,chr16,-,I19.1,856056,868943|87|6.47|1|intron ENSG00000103227.19,LMF1,chr16,-,I19.1,856056,868943|87|6.47|1|intron MSMS UPN48_class_I_Rep_3 7 599.2975463867188 2 599.299239 1196.58392 NaN NaN NaN NaN NaN NaN NaN 50.688 1 54.309 53.809 54.809 3.621 0 0 0 0.53105 1 10310 10310 1.8442 0.6509 1 11055 1651 6841 6847 13713 13713 -0.006503984825258158 GSHRKEGEEA 10 Unmodified _GSHRKEGEEA_ 0 0 0 nc|ENSG00000292348|P14209-2|CD99;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99 nc|ENSG00000292348|P14209-2|CD99 nc|ENSG00000292348|P14209-2|CD99 MSMS UPN46_class_I_Rep_3 1 550.2583618164062 2 550.259976 1098.5054 NaN NaN NaN NaN NaN NaN NaN 80.522 1 80.522 80.022 81.022 0 0 0 0 0.53105 1 18973 18973 1.4819 0.68827 1 11056 673 6842 6848 13714 13714 -0.0399129557829383 GSHRWCATA 9 Unmodified _GSHRWCATA_ 0 0 0 REV__ENST00000311124.8_1_21:46935136-46935547:-|nuORF REV__ENST00000311124.8_1_21:46935136-46935547:-|nuORF MSMS UPN48_class_I_Rep_2 6 494.723876953125 2 494.724518 987.434483 NaN NaN NaN NaN NaN NaN NaN 12.206 1 15.861 15.361 16.361 3.6552 0 0 0 0.4029 1 37 37 0 0 1 + 11057 21708 6843 6849 13715 13715 -0.05973667096816371 GSIHKALLDRK 11 Unmodified _GSIHKALLDRK_ 0 0 0 REV__L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|62|2|sense REV__L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|62|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 413.2503967285156 3 413.250695 1236.73025 0.074356 3.0728E-05 -0.88281 -0.00036482 -0.80846 -0.0003341 413.25029391397896 96.737 0.17777 96.737 96.671 96.849 0 23 15 2 0 0 0 0.67398 1 23530 23530 0.36667 0.20735 1 925420 + 11058 28399 6844 6850 13716 13716 0.12135858962665225 GSIHKALLDRK 11 Unmodified _GSIHKALLDRK_ 0 0 0 REV__L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|62|2|sense REV__L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|62|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 413.250695 1236.73025 0.08213 3.394E-05 -0.82181 -0.00033961 -0.73968 -0.00030567 413.25050707238904 93.049 0.077774 96.819 96.771 96.849 3.77 0.042919 6.1702E-05 NaN 0.36667 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 274410 + 11059 28399 6844 6850 0.12135858962665225 GSIHKALLDRK 11 Unmodified _GSIHKALLDRK_ 0 0 0 REV__L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|62|2|sense REV__L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|62|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 413.250695 1236.73025 0.10313 4.262E-05 -0.84457 -0.00034902 -0.74143 -0.0003064 413.2503392077772 92.895 0.020348 96.773 96.76 96.78 3.8782 -0.0033784 3.3491E-05 NaN 0.36667 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 39374 + 11060 28399 6844 6850 0.12135858962665225 GSIHKGLQKRN 11 Unmodified _GSIHKGLQKRN_ 0 0 0 REV__L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|7|1|sense REV__L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 413.2560729980469 3 413.242311 1236.7051 NaN NaN NaN NaN NaN NaN NaN 91.31 1 91.31 90.81 91.81 0 0 0 0 0.38417 1 22051 22051 1.2148 0.25256 1 + 11061 30689 6845 6851 13717 13717 0.09621804160133252 GSILEFHIA 9 Unmodified _GSILEFHIA_ 0 0 0 REV__L1MC1_dup10154|chr13:40995473-40996534:+|5.439615692944574|0.095685166384285|5.83|151.0|49|1|anti-sense REV__L1MC1_dup10154|chr13:40995473-40996534:+|5.439615692944574|0.095685166384285|5.83|151.0|49|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.27081298828125 2 493.768917 985.523281 0.093638 4.6235E-05 -0.23454 -0.00011581 -0.1409 -6.9572E-05 493.76878926086283 53.761 0.68014 57.288 57.066 57.746 3.5278 65 38 2 0 0 0 0.41259 1 12154 12154 7.2892 1.0834 1 96237 + 11062 26486 6846 6852 13718 13718 0.0299407141451411 GSKEVVCYSYT 11 Unmodified _GSKEVVCYSYT_ 0 0 0 nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY MSMS UPN48_class_I_Rep_1 5 618.28271484375 2 618.284271 1234.55399 NaN NaN NaN NaN NaN NaN NaN 35.247 1 38.762 38.262 39.262 3.5144 0 0 0 0.38417 1 5742 5742 1.0715 0.10919 1 11063 16723 6847 6853 13719 13719 -0.053905630534245574 GSKKLLALR 9 Unmodified _GSKKLLALR_ 0 0 0 REV__ENST00000464984.1_1_10:29797084-29811487:-|nuORF REV__ENST00000464984.1_1_10:29797084-29811487:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.3290100097656 2 493.329476 984.6444 NaN NaN NaN NaN NaN NaN NaN 22.325 1 25.749 25.249 26.249 3.4241 0 0 0 0.40098 1 2630 2630 0.45834 0 1 + 11064 21075 6848 6854 13720 13720 0.15146318847826024 GSKPLKKLP 9 Unmodified _GSKPLKKLP_ 0 0 0 Tigger15a_dup2396|chr7:148825600-148825888:+|1.328567923349742|0.0920421874082823|3.85|150.0|1|1|sense Tigger15a_dup2396|chr7:148825600-148825888:+|1.328567923349742|0.0920421874082823|3.85|150.0|1|1|sense Tigger15a_dup2396|chr7:148825600-148825888:+|1.328567923349742|0.0920421874082823|3.85|150.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 484.3182067871094 2 484.318577 966.622602 NaN NaN NaN NaN NaN NaN NaN 64.75 1 68.23 67.73 68.73 3.4792 0 0 0 0.40098 1 14664 14664 0.45834 0 1 11065 33238 6849 6855 13721 13721 0.13795514099251704 GSKVLKTV 8 Unmodified _GSKVLKTV_ 0 0 0 ENST00000503463.5_1_17:46908399-46925578:+|nuORF ENST00000503463.5_1_17:46908399-46925578:+|nuORF ENST00000503463.5_1_17:46908399-46925578:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 416.2686767578125 2 416.268553 830.522553 -0.46972 -0.00019553 0.15862 6.6027E-05 -0.3111 -0.0001295 416.26858065551744 29.26 0.46538 33.018 32.951 33.416 3.7578 39 35 2 0 0 0 0.82752 1 4645 4645 3.9444 0 1 61569 11066 7138 6850 6856 13722 13722 0.10051276765466355 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.7826538085938 2 543.782556 1085.55056 0.12722 6.9182E-05 -0.027963 -1.5206E-05 0.099262 5.3977E-05 543.7826396579136 44.538 2.5245 48.233 47.76 50.284 3.6951 396 161 3 0 0 0 0.37599 5 9605 9605;9647;9690;9729;9813 9.3831 1.2276 1 7323300 11067 11167 6851 6857 13723;13724;13725;13726;13727 13723 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.7832641601562 2 543.782556 1085.55056 0.22135 0.00012036 -0.22478 -0.00012223 -0.0034311 -1.8658E-06 543.7826610407349 47.985 0.42394 51.667 51.529 51.953 3.6819 25 20 2 0 0 0 0.37599 2 10314 10314;10331 9.3831 1.2276 1 51878 11068 11167 6851 6857 13728;13729 13728 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MSMS UPN47_class_I_Rep_1 2 543.7821044921875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 46.859 1 50.554 50.054 51.054 3.6951 0 0 0 0.32573 1 9979 9979 9.3831 0.78985 1 11069 11167 6851 6857 13730 13730 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 543.7827758789062 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.30034 1 9881 9881 13.906 1.6654 1 7409700 11070 11167 6851 6857 13731 13731 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MSMS UPN47_class_I_Rep_2 3 543.7821044921875 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 46.733 1 50.084 49.584 50.584 3.3515 0 0 0 0.37692 1 9969 9969 6.2058 0 1 11071 11167 6851 6857 13732 13732 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MSMS UPN47_class_I_Rep_2 3 543.7825317382812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 46.865 1 50.217 49.717 50.717 3.3515 0 0 0 0.32573 1 10010 10010 9.3831 0.63772 1 11072 11167 6851 6857 13733 13733 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MSMS UPN47_class_I_Rep_2 3 543.7835083007812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 47.775 1 51.125 50.625 51.625 3.3492 0 0 0 0.32573 1 10272 10272 9.3831 1.2276 1 11073 11167 6851 6857 13734 13734 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.7822875976562 2 543.782556 1085.55056 0.21383 0.00011628 -0.0054587 -2.9684E-06 0.20837 0.00011331 543.7826467027404 45.035 2.5291 48.279 47.763 50.292 3.2441 412 158 3 0 0 0 0.30034 2 9917 9917;10041 13.906 1.6654 1 8447000 11074 11167 6851 6857 13735;13736 13735 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.7821044921875 2 543.782556 1085.55056 0.32496 0.00017671 -0.3971 -0.00021594 -0.072142 -3.923E-05 543.782409080446 47.326 0.49918 50.567 50.29 50.789 3.2414 54 32 2 0 0 0 0.30034 3 10145 10145;10195;10235 13.906 3.6513 1 115230 11075 11167 6851 6857 13737;13738;13739 13737 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.7821044921875 2 543.782556 1085.55056 0.36309 0.00019744 0.24524 0.00013336 0.60833 0.0003308 543.7826320428272 47.852 0.53787 51.093 51.03 51.568 3.2405 55 42 2 0 0 0 0.43982 1 10430 10430 5.7319 0.83484 1 125570 11076 11167 6851 6857 13740 13740 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MSMS UPN47_class_I_Rep_3 4 543.782470703125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 48.445 1 51.68 51.18 52.18 3.2345 0 0 0 0.37692 1 10533 10533 6.2058 0.47393 1 11077 11167 6851 6857 13741 13741 0.01120554954900399 GSKYKVQNY 9 Unmodified _GSKYKVQNY_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|40|3|sense MSMS UPN47_class_I_Rep_3 4 543.8073120117188 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 48.542 1 51.776 51.276 52.276 3.2345 0 0 0 0.37692 1 10563 10563 6.2058 0.47393 1 11078 11167 6851 6857 13742 13742 0.01120554954900399 GSLIHLFLFVK 11 Unmodified _GSLIHLFLFVK_ 0 0 0 REV__L1PA7_dup2553|chr3:138562045-138566828:+|1.7922824318484605|0.0652053316915161|4.78|151.0|253|3|anti-sense REV__L1PA7_dup2553|chr3:138562045-138566828:+|1.7922824318484605|0.0652053316915161|4.78|151.0|253|3|anti-sense MSMS UPN48_class_I_Rep_2 6 637.372314453125 2 637.386991 1272.75943 NaN NaN NaN NaN NaN NaN NaN 102.4 1 106.13 105.63 106.63 3.7252 0 0 0 0.38417 1 24255 24255 1.1933 0 1 + 11079 29661 6852 6858 13743 13743 0.13396003258958444 GSLIRRRDRH 10 Unmodified _GSLIRRRDRH_ 0 0 0 REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|34|2|sense REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 633.3807983398438 2 633.368518 1264.72248 0.43796 0.00027739 0.42399 0.00026854 0.86195 0.00054593 633.368202612984 89.498 0.3197 93.123 93.084 93.404 3.6255 43 33 2 0 0 0 0.56273 1 21512 21512 0.40072 0 1 240710 + 11080 23678 6853 6859 13744 13744 0.1007114448577795 GSLIRRRDRH 10 Unmodified _GSLIRRRDRH_ 0 0 0 REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|34|2|sense REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 633.367431640625 2 633.368518 1264.72248 0.49691 0.00031473 0.1577 9.9883E-05 0.65461 0.00041461 633.3682238862842 88.853 0.91315 92.591 92.52 93.433 3.7379 198 105 3 0 0 0 0.56072 1 21205 21205 1.3295 0 1 633250 + 11081 23678 6853 6859 13745 13745 0.1007114448577795 GSLIRRRDRH 10 Unmodified _GSLIRRRDRH_ 0 0 0 REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|34|2|sense REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.8711547851562 2 633.368518 1264.72248 0.63311 0.00040099 0.29676 0.00018796 0.92987 0.00058895 633.3683087255615 88.831 0.73908 92.66 92.464 93.203 3.8293 219 97 4 0 0 0 0.55335 3 21147 21132;21147;21179 3.2813 3.2813 1 508990 + 11082 23678 6853 6859 13746;13747;13748 13747 0.1007114448577795 GSLLRQTR 8 Unmodified _GSLLRQTR_ 0 0 0 REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 465.77703857421875 2 465.777608 929.540663 0.20271 9.4418E-05 -0.095375 -4.4423E-05 0.10734 4.9994E-05 465.777438539351 77.3 0.10747 77.3 77.246 77.353 0 17 13 2 0 0 0 0.82752 1 18065 18065 2.3027 2.3027 1 88941 + 11083 22427 6854 6860 13749 13749 0.07307411740180214 GSLLRQTR 8 Unmodified _GSLLRQTR_ 0 0 0 REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 465.777608 929.540663 0.20271 9.4418E-05 -0.095375 -4.4423E-05 0.10734 4.9994E-05 465.777438539351 77.3 0.10747 77.3 77.246 77.353 0 -0.039813 0.00030668 NaN 2.3027 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 88941 + 11084 22427 6854 6860 0.07307411740180214 GSLLRQTR 8 Unmodified _GSLLRQTR_ 0 0 0 REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 465.777608 929.540663 -0.059766 -2.7838E-05 -0.36796 -0.00017139 -0.42772 -0.00019922 465.77741616503664 74.022 0.33323 77.258 77.052 77.385 3.2363 -0.082299 5.2757E-05 NaN 2.3027 59 37 2 NaN NaN NaN NaN 0 NaN NaN 0 74042 + 11085 22427 6854 6860 0.07307411740180214 GSLLRQTR 8 Unmodified _GSLLRQTR_ 0 0 0 REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 465.777608 929.540663 0.10194 4.748E-05 -0.58317 -0.00027163 -0.48123 -0.00022415 465.77728988371376 73.895 0.24791 77.376 77.233 77.481 3.4812 0.035765 -0.00014773 NaN 2.3027 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 132460 + 11086 22427 6854 6860 0.07307411740180214 GSLLRQTR 8 Unmodified _GSLLRQTR_ 0 0 0 REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 465.777608 929.540663 0.24506 0.00011414 -0.48764 -0.00022713 -0.24258 -0.00011299 465.7772799937232 73.876 0.30357 77.427 77.247 77.55 3.5505 0.086347 -5.8731E-05 NaN 2.3027 47 35 2 NaN NaN NaN NaN 0 NaN NaN 0 92348 + 11087 22427 6854 6860 0.07307411740180214 GSLLTVVWG 9 Unmodified _GSLLTVVWG_ 0 0 0 L1MC1_dup6001|chr7:67127460-67128690:-|1.0470211447767872|0.0186130673828312|5.81|151.0|78|3|anti-sense L1MC1_dup6001|chr7:67127460-67128690:-|1.0470211447767872|0.0186130673828312|5.81|151.0|78|3|anti-sense L1MC1_dup6001|chr7:67127460-67128690:-|1.0470211447767872|0.0186130673828312|5.81|151.0|78|3|anti-sense MSMS UPN48_class_I_Rep_1 5 466.2651672363281 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 107.57 1 111.2 110.7 111.7 3.6313 0 0 0 0.36505 1 25931 25931 7.2892 2.5332 1 11088 11176 6855 6861 13750 13750 0.049429729028588554 GSLLVSKVAFV 11 Unmodified _GSLLVSKVAFV_ 0 0 0 L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.3406982421875 2 560.342249 1118.66995 0.45244 0.00025352 -2.5297 -0.0014175 -2.0772 -0.001164 560.3408132272848 110.33 0.048676 113.96 113.95 114 3.6326 9 4 3 0 0 0 0.50573 1 26790 26790 7.609 0.88579 1 497830 11089 11871 6856 6862 13751 13751 0.11535748579603933 GSLLVSKVAFV 11 Unmodified _GSLLVSKVAFV_ 0 0 0 L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.3414306640625 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 107.24 1 110.87 110.37 111.37 3.6299 0 0 0 0.33232 1 25839 25839 10.151 2.8613 1 11090 11871 6856 6862 13752 13752 0.11535748579603933 GSLLVSKVAFV 11 Unmodified _GSLLVSKVAFV_ 0 0 0 L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_2 6 560.3403930664062 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 107.38 1 111.06 110.56 111.56 3.6783 0 0 0 0.3116 1 25379 25379 11.495 2.1116 1 11091 11871 6856 6862 13753 13753 0.11535748579603933 GSLLVSKVAFV 11 Unmodified _GSLLVSKVAFV_ 0 0 0 L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense L1MD_dup1997|chr4:2554384-2554986:-|1.30520318004675|0.0071473388780088|7.51|151.0|31|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.342249 1118.66995 0.49457 0.00027713 -2.1135 -0.0011843 -1.6189 -0.00090716 560.8425369565074 109.91 0.044304 113.58 113.55 113.6 3.6715 -0.19168 5.5214E-05 NaN 7.609 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 292270 11092 11871 6856 6862 0.11535748579603933 GSLNNRYLF 9 Unmodified _GSLNNRYLF_ 0 0 0 MLT1B_dup4511|chr4:73243892-73244298:-|1.448845031876295|0.0863997921206017|4.07|151.0|17|2|anti-sense MLT1B_dup4511|chr4:73243892-73244298:-|1.448845031876295|0.0863997921206017|4.07|151.0|17|2|anti-sense MLT1B_dup4511|chr4:73243892-73244298:-|1.448845031876295|0.0863997921206017|4.07|151.0|17|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 542.2828369140625 2 542.282723 1082.55089 0.43739 0.00023719 0.13491 7.3159E-05 0.5723 0.00031035 542.282667908222 44.554 0.86488 48.192 47.826 48.691 3.6372 113 57 3 0 0 0 0.26948 1 8468 8468 15.847 15.847 1 190640 11093 16281 6857 6863 13754 13754 0.012919746747456884 GSLVEELEQI 10 Unmodified _GSLVEELEQI_ 0 0 0 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 MSMS UPN48_class_I_Rep_1 5 558.7931518554688 2 558.792786 1115.57102 NaN NaN NaN NaN NaN NaN NaN 43.941 1 47.454 46.954 47.954 3.5132 0 0 0 0.53105 1 8305 8305 10.151 0.076642 1 + 11094 18616 6858 6864 13755 13755 0.017856808240594546 GSLVEELEQI 10 Unmodified _GSLVEELEQI_ 0 0 0 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 MSMS UPN48_class_I_Rep_1 5 558.7920532226562 2 558.792786 1115.57102 NaN NaN NaN NaN NaN NaN NaN 44.014 1 47.528 47.028 48.028 3.5132 0 0 0 0.53105 1 8328 8328 17.443 0.32975 1 + 11095 18616 6858 6864 13756 13756 0.017856808240594546 GSLVEELEQI 10 Unmodified _GSLVEELEQI_ 0 0 0 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 MSMS UPN48_class_I_Rep_3 7 558.7938232421875 2 558.792786 1115.57102 NaN NaN NaN NaN NaN NaN NaN 43.823 1 47.461 46.961 47.961 3.6385 0 0 0 0.53105 1 8202 8202 8.1555 0 1 + 11096 18616 6858 6864 13757 13757 0.017856808240594546 GSNPYTLKL 9 Unmodified _GSNPYTLKL_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS UPN48_class_I_Rep_1 5 496.7742004394531 2 496.7742 991.533846 0.16754 8.3228E-05 0.026961 1.3393E-05 0.1945 9.6622E-05 496.7741427202059 48.226 0.67213 51.749 51.409 52.081 3.5239 99 44 3 0 0 0 0.11648 2 9591 9552;9591 30.703 30.703 1 263050 11097 3333 6859 6865 13758;13759 13759 0.037740540689469526 GSNPYTLKL 9 Unmodified _GSNPYTLKL_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS UPN48_class_I_Rep_2 6 496.7744140625 2 496.7742 991.533846 0.1795 8.917E-05 -0.01537 -7.6355E-06 0.16413 8.1534E-05 496.77416365714606 47.919 0.636 51.655 51.356 51.992 3.7361 81 43 2 0 0 0 0.098221 2 9495 9453;9495 34.222 34.222 1 283690 11098 3333 6859 6865 13760;13761 13761 0.037740540689469526 GSNPYTLKL 9 Unmodified _GSNPYTLKL_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS UPN48_class_I_Rep_3 7 496.7742614746094 2 496.7742 991.533846 0.16952 8.4215E-05 0.079228 3.9359E-05 0.24875 0.00012357 496.7742222873653 48.111 0.67897 51.745 51.404 52.083 3.6339 85 44 3 0 0 0 0.073198 2 9480 9437;9480 40.239 40.239 1 320580 11099 3333 6859 6865 13762;13763 13763 0.037740540689469526 GSPHLKILT 9 Unmodified _GSPHLKILT_ 0 0 0 MLT1C_dup18209|chr19:17109512-17109939:-|2.536902359316929|0.0905535402897303|4.81|151.0|17|1|anti-sense MLT1C_dup18209|chr19:17109512-17109939:-|2.536902359316929|0.0905535402897303|4.81|151.0|17|1|anti-sense MLT1C_dup18209|chr19:17109512-17109939:-|2.536902359316929|0.0905535402897303|4.81|151.0|17|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 482.78179931640625 2 483.292559 964.570566 -0.47201 -0.00022812 -3.8361 -0.001854 -4.3081 -0.0020821 483.291587117154 32.485 0.42274 35.772 35.526 35.948 3.2867 48 31 3 0 0 0 0.12462 1 5628 5628 0.45834 0 1 63097 11100 16307 6860 6866 13764 13764 0.08686350685513844 GSPHLKILT 9 Unmodified _GSPHLKILT_ 0 0 0 MLT1C_dup18209|chr19:17109512-17109939:-|2.536902359316929|0.0905535402897303|4.81|151.0|17|1|anti-sense MLT1C_dup18209|chr19:17109512-17109939:-|2.536902359316929|0.0905535402897303|4.81|151.0|17|1|anti-sense MLT1C_dup18209|chr19:17109512-17109939:-|2.536902359316929|0.0905535402897303|4.81|151.0|17|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 483.292559 964.570566 -0.30699 -0.00014837 -3.9408 -0.0019045 -4.2478 -0.0020529 483.2915056444492 31.804 0.4538 35.533 35.32 35.774 3.7293 -0.11957 -4.3447E-05 NaN 0.45834 58 34 3 NaN NaN NaN NaN 0 NaN NaN 0 67041 11101 16307 6860 6866 0.08686350685513844 GSPPRAGRAV 10 Unmodified _GSPPRAGRAV_ 0 0 0 REV__ENST00000536896.2_1_1:26146164-26146353:-|nuORF REV__ENST00000536896.2_1_1:26146164-26146353:-|nuORF MSMS UPN48_class_I_Rep_1 5 484.2669372558594 2 484.275232 966.535912 NaN NaN NaN NaN NaN NaN NaN 94.796 1 98.413 97.913 98.913 3.6167 0 0 0 0.53105 1 22816 22816 3.2813 1.2216 1 + 11102 22894 6861 6867 13765 13765 0.05130527597418677 GSPSDYQRI 9 Unmodified _GSPSDYQRI_ 0 0 0 L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense;L1PA5_dup10595|chr18:37111557-37117653:+|1.1049979260825962|0.0445246974299591|4.63|151.0|136|3|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|49|2|sense;L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|70|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.7487487792969 2 511.748713 1021.48287 0.25663 0.00013133 -0.2596 -0.00013285 -0.0029759 -1.5229E-06 511.7485648963699 52.893 0.79688 56.412 56.055 56.852 3.5192 126 58 3 0 0 0 0.41259 2 10993 10993;11073 7.2892 7.2892 1 704250 11103 14207 6862 6868 13766;13767 13766 -0.027008949759192546 GSPSDYQRI 9 Unmodified _GSPSDYQRI_ 0 0 0 L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense;L1PA5_dup10595|chr18:37111557-37117653:+|1.1049979260825962|0.0445246974299591|4.63|151.0|136|3|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|49|2|sense;L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|70|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.7486267089844 2 511.748713 1021.48287 0.3708 0.00018976 -0.33679 -0.00017235 0.034014 1.7407E-05 511.7485330220838 52.786 0.87702 56.395 56.027 56.904 3.6098 133 56 3 0 0 0 0.28552 2 10957 10957;11001 14.838 14.838 1 747710 11104 14207 6862 6868 13768;13769 13768 -0.027008949759192546 GSPSDYQRI 9 Unmodified _GSPSDYQRI_ 0 0 0 L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense;L1PA5_dup10595|chr18:37111557-37117653:+|1.1049979260825962|0.0445246974299591|4.63|151.0|136|3|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|49|2|sense;L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|70|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.7486267089844 2 511.748713 1021.48287 0.16192 8.2862E-05 -0.15915 -8.1446E-05 0.0027663 1.4156E-06 511.7486124375029 52.782 0.86162 56.38 56.045 56.906 3.5979 135 57 3 0 0 0 0.36392 2 10937 10892;10937 10.074 10.074 1 980370 11105 14207 6862 6868 13770;13771 13771 -0.027008949759192546 GSQCNCTERCD 11 Unmodified _GSQCNCTERCD_ 0 0 0 REV__ENSG00000164283|ENST00000381405|ESM1 REV__ENSG00000164283|ENST00000381405|ESM1 MSMS UPN46_class_I_Rep_3 1 405.79791259765625 3 405.81109 1214.41144 NaN NaN NaN NaN NaN NaN NaN 118.28 1 118.28 117.78 118.78 0 0 0 0 0.38417 1 29352 29352 0.073264 0 1 + 11106 20047 6863 6869 13772 13772 -0.1871884205875176 GSQNYNNLL 9 Unmodified _GSQNYNNLL_ 0 0 0 REV__HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|17|2|sense REV__HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.7489929199219 2 511.748713 1021.48287 0.25663 0.00013133 -0.2596 -0.00013285 -0.0029759 -1.5229E-06 511.7485648963699 52.893 0.79688 56.412 56.055 56.852 3.5192 126 58 3 0 0 0 0.45688 1 10954 10954 4.756 0.81161 1 704250 + 11107 23596 6864 6870 13773 13773 -0.027008949759192546 GSRALISHCAP 11 Unmodified _GSRALISHCAP_ 0 0 0 REV__L1ME1_dup22654|chr12:71853480-71854349:-|1.3990226544321358|0.0237696312652114|5.88|151.0|60|2|anti-sense REV__L1ME1_dup22654|chr12:71853480-71854349:-|1.3990226544321358|0.0237696312652114|5.88|151.0|60|2|anti-sense MSMS UPN48_class_I_Rep_1 5 556.2880859375 2 556.287482 1110.56041 NaN NaN NaN NaN NaN NaN NaN 79.124 1 82.659 82.159 83.159 3.5352 0 0 0 0.38417 1 18878 18878 0.96228 0.16864 1 + 11108 27683 6865 6871 13774 13774 0.00955419688625625 GSSPVFNQR 9 Unmodified _GSSPVFNQR_ 0 0 0 ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L MULTI-MSMS UPN48_class_I_Rep_3 7 496.25140380859375 2 496.251423 990.488293 0.14153 7.0236E-05 -0.34879 -0.00017309 -0.20726 -0.00010285 496.2511664531221 24.758 0.42923 28.527 28.394 28.824 3.769 70 50 2 0 0 0 0.42249 3 2929 2918;2929;2967 6.7232 2.7788 1 46929 11109 2294 6866 6872 13775;13776;13777 13776 -0.007331713934263462 GSSQVDFRL 9 Unmodified _GSSQVDFRL_ 0 0 0 L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|327|3|anti-sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|327|3|anti-sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|327|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 504.75921630859375 2 504.759081 1007.50361 0.35194 0.00017765 -0.025651 -1.2948E-05 0.32629 0.0001647 504.7590754809955 52.802 1.5726 56.412 55.933 57.505 3.6098 273 108 4 0 0 0 0.10568 1 10952 10952 32.786 2.1491 1 5516400 11110 14954 6867 6873 13778 13778 0.00015695403772042482 GSSQVDFRL 9 Unmodified _GSSQVDFRL_ 0 0 0 L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|327|3|anti-sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|327|3|anti-sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|327|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 504.7591552734375 2 504.759081 1007.50361 0.13001 6.5622E-05 0.17853 9.0116E-05 0.30854 0.00015574 504.7591775106865 52.83 1.288 56.428 55.972 57.26 3.5979 270 90 5 0 0 0 0.074399 3 10896 10896;10935;10973 39.95 3.8227 1 5643600 11111 14954 6867 6873 13779;13780;13781 13779 0.00015695403772042482 GSSRSAIHAKP 11 Unmodified _GSSRSAIHAKP_ 0 0 0 REV__ENST00000406772.5_2_22:38005103-38009136:+|nuORF REV__ENST00000406772.5_2_22:38005103-38009136:+|nuORF MSMS UPN47_class_I_Rep_1 2 555.8028564453125 2 555.804354 1109.59415 NaN NaN NaN NaN NaN NaN NaN 111.15 1 114.73 114.23 115.23 3.572 0 0 0 0.38417 1 27408 27408 0.96228 0.16864 1 + 11112 22172 6868 6874 13782 13782 0.04374164452019613 GSTPNSLFFK 10 Unmodified _GSTPNSLFFK_ 0 0 0 REV__L1MA7_dup7459|chr16:23849710-23850369:-|2.3975165815784103|0.0096095160778213|7.96|151.0|10|2|sense REV__L1MA7_dup7459|chr16:23849710-23850369:-|2.3975165815784103|0.0096095160778213|7.96|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2847900390625 2 549.284931 1096.55531 0.33904 0.00018623 0.60415 0.00033185 0.9432 0.00051808 549.2851607810657 38.971 0.28582 42.627 42.519 42.805 3.6557 47 27 2 0 0 0 0.54822 1 6758 6758 5.7319 1.7875 1 83866 + 11113 25524 6869 6875 13783 13783 0.010894390976545765 GSVDQYARI 9 Unmodified _GSVDQYARI_ 0 0 0 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 MULTI-MSMS UPN48_class_I_Rep_3 7 504.7590637207031 2 504.759081 1007.50361 0.13001 6.5622E-05 0.17853 9.0116E-05 0.30854 0.00015574 504.7591775106865 52.83 1.288 56.428 55.972 57.26 3.5979 270 90 5 0 0 0 0.1249 1 10857 10857 29.082 0.59474 1 5643600 11114 1044 6870 6876 13784 13784 0.00015695403749305115 GSVLFVLASV 10 Unmodified _GSVLFVLASV_ 0 0 0 REV__ENSG00000125895|ENST00000429036|TMEM74B REV__ENSG00000125895|ENST00000429036|TMEM74B MULTI-MSMS UPN47_class_I_Rep_2 3 496.2943420410156 2 496.294768 990.574983 0.26656 0.00013229 0.031038 1.5404E-05 0.2976 0.0001477 496.2947032677399 61.805 0.67448 65.064 64.552 65.226 3.2594 69 41 2 0 0 0 0.54822 1 14448 14448 5.7319 0.43497 1 148180 + 11115 18846 6871 6877 13785 13785 0.0793181510841805 GSWDKTLKF 9 Unmodified _GSWDKTLKF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS UPN48_class_I_Rep_1 5 541.2875366210938 2 541.287474 1080.5604 0.38212 0.00020683 0.33694 0.00018238 0.71905 0.00038922 541.2875785731491 47.243 0.95372 50.765 50.371 51.325 3.5219 152 71 4 0 0 0 0.014506 3 9304 9304;9344;9383 103.82 59.965 1 779680 11116 1550 6872 6878 13786;13787;13788 13786 0.023337429602861448 GSWDKTLKF 9 Unmodified _GSWDKTLKF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS UPN48_class_I_Rep_2 6 541.28759765625 2 541.287474 1080.5604 0.38407 0.00020789 0.31936 0.00017286 0.70343 0.00038076 541.287533416322 46.894 0.91837 50.643 50.296 51.215 3.7494 153 77 3 0 0 0 0.01093 2 9200 9200;9315 69.338 37.033 1 667800 11117 1550 6872 6878 13789;13790 13789 0.023337429602861448 GSWDKTLKF 9 Unmodified _GSWDKTLKF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS UPN48_class_I_Rep_3 7 541.2875366210938 2 541.287474 1080.5604 0.45445 0.00024599 0.21678 0.00011734 0.67123 0.00036333 541.2875459707816 47.167 0.86293 50.804 50.413 51.276 3.6363 128 70 3 0 0 0 0.088679 2 9294 9294;9330 36.506 22.6 1 443120 11118 1550 6872 6878 13791;13792 13791 0.023337429602861448 GSWKELYTD 9 Unmodified _GSWKELYTD_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS UPN46_class_I_Rep_3 1 550.2586669921875 2 549.758746 1097.50294 0.39362 0.00021639 -0.61493 -0.00033806 -0.22131 -0.00012167 550.2596324295721 83.965 0.11316 83.965 83.874 83.987 0 16 12 2 0 0 0 0.48643 1 19938 19938 2.0598 0 1 59243 11119 1281 6873 6879 13793 13793 -0.041911440359626795 GSYGSLARF 9 Unmodified _GSYGSLARF_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MULTI-MSMS UPN48_class_I_Rep_1 5 479.7441711425781 2 479.243067 956.47158 0.11619 5.5685E-05 -0.21608 -0.00010356 -0.099891 -4.7872E-05 479.2428950979979 44.963 0.50862 48.478 48.288 48.796 3.5147 62 37 2 0 0 0 0.088679 3 8592 8592;8641;8697 36.506 16.053 1 144390 11120 3833 6874 6880 13794;13795;13796 13794 -0.008396722793918343 GSYGSLARF 9 Unmodified _GSYGSLARF_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MULTI-MSMS UPN48_class_I_Rep_2 6 479.24298095703125 2 479.243067 956.47158 0.15055 7.2152E-05 -0.40218 -0.00019274 -0.25162 -0.00012059 479.2428569162059 44.741 0.63618 48.502 48.128 48.764 3.7617 55 43 2 0 0 0 0.048662 2 8560 8510;8560 49.554 18.918 1 145780 11121 3833 6874 6880 13797;13798 13798 -0.008396722793918343 GSYGSLARF 9 Unmodified _GSYGSLARF_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF;ENST00000493673.1_1_1:151372075-151372920:+|nuORF;ENST00000476467.1_1_1:151372063-151372664:+|nuORF ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MULTI-MSMS UPN48_class_I_Rep_3 7 479.24298095703125 2 479.243067 956.47158 0.13935 6.6784E-05 -0.22002 -0.00010544 -0.080672 -3.8661E-05 479.24285367789093 44.836 0.54587 48.473 48.254 48.8 3.6372 54 36 2 0 0 0 0.066364 2 8507 8507;8582 41.956 21.502 1 195140 11122 3833 6874 6880 13799;13800 13799 -0.008396722793918343 GSYSIKSRF 9 Unmodified _GSYSIKSRF_ 0 0 0 ENSG00000141522|ENST00000269321|ARHGDIA ENSG00000141522|ENST00000269321|ARHGDIA ENSG00000141522|ENST00000269321|ARHGDIA MULTI-MSMS UPN48_class_I_Rep_1 5 522.777587890625 2 522.777274 1043.53999 0.34493 0.00018032 -0.2897 -0.00015145 0.055231 2.8873E-05 522.7770738597749 31.829 0.9319 35.363 35.046 35.978 3.5342 173 91 3 0 0 0 0.061655 2 4770 4736;4770 43.982 25.836 1 325720 11123 3223 6875 6881 13801;13802 13802 0.019965723004588654 GSYSIKSRF 9 Unmodified _GSYSIKSRF_ 0 0 0 ENSG00000141522|ENST00000269321|ARHGDIA ENSG00000141522|ENST00000269321|ARHGDIA ENSG00000141522|ENST00000269321|ARHGDIA MULTI-MSMS UPN48_class_I_Rep_2 6 522.7772216796875 2 522.777274 1043.53999 0.38279 0.00020011 -0.34187 -0.00017872 0.040917 2.139E-05 522.7770506369324 31.764 0.84516 35.405 35.039 35.884 3.641 160 85 3 0 0 0 0.10225 3 4843 4770;4806;4843 33.445 18.607 1 368580 11124 3223 6875 6881 13803;13804;13805 13805 0.019965723004588654 GSYSIKSRF 9 Unmodified _GSYSIKSRF_ 0 0 0 ENSG00000141522|ENST00000269321|ARHGDIA ENSG00000141522|ENST00000269321|ARHGDIA ENSG00000141522|ENST00000269321|ARHGDIA MULTI-MSMS UPN48_class_I_Rep_3 7 522.7771606445312 2 522.777274 1043.53999 0.31434 0.00016433 -0.31763 -0.00016605 -0.0032953 -1.7227E-06 522.7770493369414 31.71 0.90947 35.411 34.963 35.873 3.7015 179 99 2 0 0 0 0.10225 3 4664 4664;4698;4730 33.445 33.445 1 317600 11125 3223 6875 6881 13806;13807;13808 13806 0.019965723004588654 GSYSIKTQF 9 Unmodified _GSYSIKTQF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS UPN48_class_I_Rep_1 5 515.7633056640625 2 515.763832 1029.51311 0.26107 0.00013465 -0.1675 -8.6391E-05 0.093569 4.8259E-05 515.7636371180753 43.012 0.5741 46.523 46.211 46.785 3.5103 66 40 2 0 0 0 0.17979 2 8032 8032;8072 22.658 5.5715 1 105820 11126 2541 6876 6882 13809;13810 13809 -0.00046536310719602625 GSYSIKTQF 9 Unmodified _GSYSIKTQF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS UPN48_class_I_Rep_2 6 515.763916015625 2 515.763832 1029.51311 0.27523 0.00014195 -0.43553 -0.00022463 -0.1603 -8.2678E-05 515.7636334261459 42.634 0.42653 46.392 46.239 46.665 3.7579 67 39 2 0 0 0 0.21414 1 7918 7918 19.362 2.2754 1 132890 11127 2541 6876 6882 13811 13811 -0.00046536310719602625 GSYTSQPRL 9 Unmodified _GSYTSQPRL_ 0 0 0 REV__L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|23|2|sense REV__L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 504.75909423828125 2 504.759081 1007.50361 0.2311 0.00011665 0.077366 3.9051E-05 0.30847 0.0001557 504.7591196680763 52.893 1.3613 56.412 55.963 57.324 3.5192 280 102 4 0 0 0 0.1249 1 10957 10957 29.082 0 1 4516800 + 11128 30626 6877 6883 13812 13812 0.00015695403772042482 GTADITLRF 9 Unmodified _GTADITLRF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN48_class_I_Rep_1 5 497.2724914550781 2 497.271824 992.529095 0.26073 0.00012965 1.3737 0.00068309 1.6344 0.00081274 497.2726324272016 56.444 0.42412 59.945 59.711 60.135 3.5014 50 33 2 0 0 0 0.11355 1 12132 12132 31.268 5.869 1 149750 11129 1655 6878 6884 13813 13813 0.03253169926199462 GTADITLRF 9 Unmodified _GTADITLRF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN48_class_I_Rep_2 6 497.26458740234375 2 497.271824 992.529095 0.39702 0.00019743 1.5108 0.00075128 1.9078 0.00094871 497.27276825221657 56.39 0.47578 59.924 59.646 60.122 3.5333 56 38 2 0 0 0 0.16799 3 12078 12075;12078;12134 23.79 6.6769 1 129430 11130 1655 6878 6884 13814;13815;13816 13815 0.03253169926199462 GTADITLRF 9 Unmodified _GTADITLRF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN48_class_I_Rep_3 7 497.2725830078125 2 497.271824 992.529095 0.15216 7.5664E-05 1.1769 0.00058522 1.329 0.00066089 497.2725616299092 56.24 0.47957 59.783 59.574 60.054 3.5427 59 41 2 0 0 0 0.17897 2 12035 11993;12035 22.736 2.2827 1 119070 11131 1655 6878 6884 13817;13818 13818 0.03253169926199462 GTADVHFER 9 Unmodified _GTADVHFER_ 0 0 0 ENST00000512673.1_1_17:79846815-79848630:-|nuORF;nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF ENST00000512673.1_1_17:79846815-79848630:-|nuORF ENST00000512673.1_1_17:79846815-79848630:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 516.2494506835938 2 516.24888 1030.48321 0.016666 8.6038E-06 0.55736 0.00028774 0.57403 0.00029634 516.249093573214 27.883 0.30358 27.883 27.794 28.098 0 35 23 2 0 0 0 0.0203 1 4189 4189 63.227 36.959 1 87733 11132 5010 6879 6885 13819 13819 -0.030814752560445413 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS UPN47_class_I_Rep_1 2 540.2902221679688 2 540.290214 1078.56587 0.42971 0.00023217 -0.28653 -0.00015481 0.14317 7.7355E-05 540.2901945588759 59.424 1.4984 62.823 62.283 63.781 3.3982 340 107 4 0 0 0 0.0053074 9 13715 13715;13754;13792;13833;13874;13915;13999;14035;14072 122.18 54.098 1 8214600 11133 667 6880 6886 13820;13821;13822;13823;13824;13825;13826;13827;13828 13820 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS UPN47_class_I_Rep_1 2 540.2905883789062 2 540.290214 1078.56587 0.42853 0.00023153 0.35604 0.00019237 0.78457 0.0004239 540.2902562024448 60.511 0.36684 63.892 63.756 64.123 3.3815 49 34 2 0 0 0 0.31407 1 14116 14116 13.042 1.4022 1 138100 11134 667 6880 6886 13829 13829 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS UPN47_class_I_Rep_2 3 540.2904052734375 2 540.290214 1078.56587 0.45725 0.00024705 -0.25026 -0.00013521 0.20698 0.00011183 540.2901957462504 59.608 1.4648 62.881 62.409 63.874 3.2731 282 98 4 0 0 0 0.0053074 7 14034 13818;13860;13901;13947;13988;14034;14077 110.67 51.996 1 9824700 11135 667 6880 6886 13830;13831;13832;13833;13834;13835;13836 13835 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MSMS UPN47_class_I_Rep_2 3 540.2904052734375 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 60.35 1 63.615 63.115 64.115 3.2654 0 0 0 0.036539 1 14115 14115 41.956 9.6501 1 11136 667 6880 6886 13837 13837 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MSMS UPN47_class_I_Rep_2 3 540.2904052734375 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 60.491 1 63.756 63.256 64.256 3.2654 0 0 0 0.078496 1 14158 14158 29.082 2.1979 1 11137 667 6880 6886 13838 13838 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MSMS UPN47_class_I_Rep_2 3 540.290771484375 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 60.746 1 64.012 63.512 64.512 3.2654 0 0 0 0.25702 1 14233 14233 13.042 0 1 11138 667 6880 6886 13839 13839 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS UPN47_class_I_Rep_3 4 540.290283203125 2 540.290214 1078.56587 0.34101 0.00018424 -0.045491 -2.4579E-05 0.29551 0.00015966 540.2902836207342 59.767 1.628 62.932 62.442 64.07 3.1651 352 120 4 0 0 0 0.0053074 10 13904 13904;13941;13980;14019;14062;14106;14145;14260;14297;14314 106.94 57.007 1 7464700 11139 667 6880 6886 13840;13841;13842;13843;13844;13845;13846;13847;13848;13849 13840 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS UPN47_class_I_Rep_3 4 540.291015625 2 540.290214 1078.56587 0.36007 0.00019454 1.3233 0.00071495 1.6833 0.00090949 540.2906187891007 60.919 0.2822 64.084 63.956 64.238 3.1651 34 26 3 0 0 0 0.36392 1 14354 14354 10.074 0 1 198160 11140 667 6880 6886 13850 13850 0.02973421752108152 GTDELRLLY 9 Unmodified _GTDELRLLY_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 540.290214 1078.56587 0.36007 0.00019454 1.3233 0.00071495 1.6833 0.00090949 540.2906187891007 60.919 0.2822 64.084 63.956 64.238 3.1651 0.096048 0.00058549 NaN 13.042 34 26 3 NaN NaN NaN NaN 0 NaN NaN 0 198160 11141 667 6880 6886 0.02973421752108152 GTDGHVHLY 9 Unmodified _GTDGHVHLY_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS UPN47_class_I_Rep_1 2 499.73797607421875 2 499.738148 997.461744 -0.2805 -0.00014018 0.50837 0.00025405 0.22787 0.00011388 499.73830651858657 26.434 0.83766 30.196 29.971 30.808 3.7624 180 73 3 0 0 0 0.0088319 3 3815 3779;3815;3856 70.716 42.229 1 243690 11142 2278 6881 6887 13851;13852;13853 13852 -0.0370886028475752 GTDGHVHLY 9 Unmodified _GTDGHVHLY_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS UPN47_class_I_Rep_2 3 499.7383117675781 2 499.738148 997.461744 -0.17313 -8.652E-05 0.1835 9.1704E-05 0.010374 5.1844E-06 499.7382017140788 26.621 1.0185 30.115 29.868 30.886 3.4945 168 93 2 0 0 0 0.0058965 5 3929 3860;3896;3929;3965;4005 81.864 45.82 1 227180 11143 2278 6881 6887 13854;13855;13856;13857;13858 13856 -0.0370886028475752 GTDGHVHLY 9 Unmodified _GTDGHVHLY_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 499.738148 997.461744 -0.4437 -0.00022173 0.51821 0.00025897 0.074509 3.7235E-05 499.7383516158669 26.885 1.0769 30.227 29.911 30.988 3.3422 0.047725 0.00012047 NaN 81.864 165 90 2 NaN NaN NaN NaN 0 NaN NaN 0 223060 11144 2278 6881 6887 -0.0370886028475752 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 522.2740478515625 2 522.274032 1042.53351 0.32944 0.00017206 -0.3227 -0.00016854 0.0067421 3.5212E-06 522.273875819732 60.305 0.5589 63.703 63.444 64.003 3.3982 86 51 2 0 0 0 0.048662 1 14061 14061 49.554 15.153 1 193680 11145 684 6882 6888 13859 13859 0.01394634349117041 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 522.2738037109375 2 522.274032 1042.53351 0.25756 0.00013452 -0.29861 -0.00015596 -0.041055 -2.1442E-05 522.2738819034937 60.561 0.69579 63.726 63.436 64.132 3.1651 72 58 2 0 0 0 0.048662 1 14257 14257 49.554 13.427 1 143200 11146 684 6882 6888 13860 13860 0.01394634349117041 GTDLSIFKY 9 Unmodified _GTDLSIFKY_ 0 0 0 ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 ENST00000471188.5_1_7:92887656-92969983:+|nuORF ENST00000471188.5_1_7:92887656-92969983:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 522.274032 1042.53351 0.071903 3.7553E-05 -0.13805 -7.2098E-05 -0.066144 -3.4545E-05 522.2739984456571 60.55 0.65086 63.816 63.533 64.184 3.2654 0.067472 0.00011804 NaN 49.554 95 58 3 NaN NaN NaN NaN 0 NaN NaN 0 150010 11147 684 6882 6888 0.01394634349117041 GTDPQLLLY 9 Unmodified _GTDPQLLLY_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_1 2 510.2742004394531 2 510.274032 1018.53351 0.20418 0.00010419 0.3721 0.00018987 0.57628 0.00029406 510.2741695294379 69.062 0.84352 72.43 71.958 72.802 3.3678 169 66 3 0 0 0 0.032038 4 16671 16671;16709;16745;16785 56.177 52.268 1 589860 11148 4633 6883 6889 13861;13862;13863;13864 13861 0.024986343491036678 GTDPQLLLY 9 Unmodified _GTDPQLLLY_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_2 3 510.274169921875 2 510.274032 1018.53351 0.09093 4.6399E-05 0.48997 0.00025002 0.5809 0.00029642 510.2741648125555 69.275 0.88802 72.551 72.175 73.063 3.2761 186 73 3 0 0 0 0.0081951 3 16796 16757;16796;16880 71.134 52.268 1 579150 11149 4633 6883 6889 13865;13866;13867 13866 0.024986343491036678 GTDPQLLLY 9 Unmodified _GTDPQLLLY_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_3 4 510.2740783691406 2 510.274032 1018.53351 0.26488 0.00013516 0.4403 0.00022467 0.70518 0.00035983 510.2741562338469 69.262 0.95262 72.466 71.974 72.927 3.2044 201 74 3 0 0 0 0.027484 4 16856 16813;16856;16894;16936 58.679 58.679 1 563100 11150 4633 6883 6889 13868;13869;13870;13871 13869 0.024986343491036678 GTEEILVKV 9 Unmodified _GTEEILVKV_ 0 0 0 REV__L1MC3_dup6025|chr8:38221816-38222842:-|1.9594123909661547|0.4439357348960778|2.14|151.0|26|2|sense REV__L1MC3_dup6025|chr8:38221816-38222842:-|1.9594123909661547|0.4439357348960778|2.14|151.0|26|2|sense MSMS UPN48_class_I_Rep_3 7 494.2884826660156 2 494.289682 986.564812 NaN NaN NaN NaN NaN NaN NaN 108.9 1 112.58 112.08 113.08 3.6751 0 0 0 0.37476 1 25832 25832 6.7232 1.4925 1 + 11151 26769 6884 6890 13872 13872 0.07099207383203066 GTEIVTESEY 10 Unmodified _GTEIVTESEY_ 0 0 0 nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 MULTI-MSMS UPN47_class_I_Rep_1 2 564.2578735351562 2 564.258776 1126.503 0.35776 0.00020187 -0.1682 -9.4908E-05 0.18956 0.00010696 564.2586013948302 70.277 0.42346 73.648 73.483 73.907 3.3713 66 42 2 0 0 0 0.41718 2 17108 17090;17108 18.146 3.8321 1 83311 11152 3465 6885 6891 13873;13874 13874 -0.05519188826588106 GTEIVTESEY 10 Unmodified _GTEIVTESEY_ 0 0 0 nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 MULTI-MSMS UPN47_class_I_Rep_2 3 564.2590942382812 2 564.258776 1126.503 0.41238 0.00023269 -0.075975 -4.287E-05 0.33641 0.00018982 564.2584979052 70.544 0.40853 73.827 73.602 74.011 3.2828 64 39 2 0 0 0 0.51565 2 17184 17184;17222 10.074 2.66 1 87708 11153 3465 6885 6891 13875;13876 13875 -0.05519188826588106 GTEIVTESEY 10 Unmodified _GTEIVTESEY_ 0 0 0 nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 MULTI-MSMS UPN47_class_I_Rep_3 4 564.258056640625 2 564.258776 1126.503 0.4463 0.00025183 -0.46965 -0.00026501 -0.023351 -1.3176E-05 564.2583225972191 70.636 0.42702 73.847 73.565 73.992 3.2113 52 36 2 0 0 0 0.47413 1 17250 17250 13.906 4.5586 1 67898 11154 3465 6885 6891 13877 13877 -0.05519188826588106 GTELLSLVY 9 Unmodified _GTELLSLVY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN47_class_I_Rep_1 2 497.77642822265625 2 497.776408 993.538263 NaN NaN NaN NaN NaN NaN NaN 80.202 1 83.667 83.167 84.167 3.465 0 0 0 0.29868 1 19982 19982 10.824 0 1 11155 5749 6886 6892 13878 13878 0.04123518491860523 GTELLSLVY 9 Unmodified _GTELLSLVY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN47_class_I_Rep_1 2 497.7768249511719 2 497.776408 993.538263 NaN NaN NaN NaN NaN NaN NaN 80.578 1 84.065 83.565 84.565 3.4874 0 0 0 0.29868 1 20074 20074 10.824 3.5347 1 11156 5749 6886 6892 13879 13879 0.04123518491860523 GTELLSLVY 9 Unmodified _GTELLSLVY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN47_class_I_Rep_1 2 497.77679443359375 2 497.776408 993.538263 NaN NaN NaN NaN NaN NaN NaN 80.638 1 84.126 83.626 84.626 3.4874 0 0 0 0.29868 1 20093 20093 10.824 0 1 11157 5749 6886 6892 13880 13880 0.04123518491860523 GTELLSLVY 9 Unmodified _GTELLSLVY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MSMS UPN47_class_I_Rep_2 3 497.77667236328125 2 497.776408 993.538263 NaN NaN NaN NaN NaN NaN NaN 80.379 1 83.749 83.249 84.249 3.3694 0 0 0 0.015779 1 20019 20019 54.774 16.8 1 11158 5749 6886 6892 13881 13881 0.04123518491860523 GTELLSLVY 9 Unmodified _GTELLSLVY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_3 4 497.7765197753906 2 497.776408 993.538263 0.25203 0.00012546 0.4227 0.00021041 0.67473 0.00033587 497.77662633616654 80.483 0.47481 83.793 83.672 84.147 3.309 82 64 2 0 0 0 0.051515 1 20144 20144 48.346 14.243 1 424670 11159 5749 6886 6892 13882 13882 0.04123518491860523 GTEVHASEY 9 Unmodified _GTEVHASEY_ 0 0 0 REV__ENST00000452533.6_1_12:32896368-32896542:+|nuORF REV__ENST00000452533.6_1_12:32896368-32896542:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 496.29571533203125 2 496.719621 991.42469 0.23449 0.00011648 0.67735 0.00033646 0.91185 0.00045293 496.7200397840758 53.628 0.23767 53.628 53.565 53.803 0 31 24 2 0 0 0 0.12034 1 11594 11594 7.2892 2.96 1 149300 + 11160 22391 6887 6893 13883 13883 -0.07136576621189761 GTFRLAIGLY 10 Unmodified _GTFRLAIGLY_ 0 0 0 L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|125|3|sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|125|3|sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|125|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.8190307617188 2 555.818941 1109.62333 0.49908 0.0002774 -0.60446 -0.00033597 -0.10538 -5.857E-05 555.8184025207586 68.968 0.4317 72.489 72.233 72.664 3.5216 47 27 2 0 0 0 0.44806 1 15900 15900 15.847 3.3156 1 120730 11161 13718 6888 6894 13884 13884 0.0729030874831551 GTGEPSGRCIH 11 Unmodified _GTGEPSGRCIH_ 0 0 0 MER54A_dup336|chr9:96803264-96804139:-|1.0283277804292374|0.029881515037277|5.1|151.0|39|1|anti-sense MER54A_dup336|chr9:96803264-96804139:-|1.0283277804292374|0.029881515037277|5.1|151.0|39|1|anti-sense MER54A_dup336|chr9:96803264-96804139:-|1.0283277804292374|0.029881515037277|5.1|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_1 5 557.2584838867188 2 557.258922 1112.50329 NaN NaN NaN NaN NaN NaN NaN 83.005 1 86.592 86.092 87.092 3.5871 0 0 0 0.38417 1 19840 19840 1.1933 0.39971 1 11162 16108 6889 6895 13885 13885 -0.04846047587739122 GTGSLPFGKVV 11 Unmodified _GTGSLPFGKVV_ 0 0 0 REV__ENST00000256151.7_1_12:82752058-82752121:-|nuORF REV__ENST00000256151.7_1_12:82752058-82752121:-|nuORF MSMS UPN46_class_I_Rep_3 1 531.3011474609375 2 531.303124 1060.5917 NaN NaN NaN NaN NaN NaN NaN 68.196 1 68.196 67.696 68.696 0 0 0 0 0.38417 1 15558 15558 1.1933 0.12188 1 + 11163 21534 6890 6896 13886 13886 0.06382315994369492 GTKFLDCTQQR 11 Unmodified _GTKFLDCTQQR_ 0 0 0 THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|62|2|anti-sense THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|62|2|anti-sense THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|62|2|anti-sense MSMS UPN48_class_I_Rep_2 6 432.88519287109375 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 100.15 1 103.9 103.4 104.4 3.7575 0 0 0 0.38417 1 23789 23789 1.0136 0.051299 1 11164 32925 6891 6897 13887 13887 -0.006769608023205365 GTKGMPCACY 10 Unmodified _GTKGMPCACY_ 0 0 0 REV__ENSG00000074181|ENST00000263388|NOTCH3 REV__ENSG00000074181|ENST00000263388|NOTCH3 MSMS UPN47_class_I_Rep_3 4 515.7094116210938 2 515.711373 1029.40819 NaN NaN NaN NaN NaN NaN NaN 22.116 1 25.466 24.966 25.966 3.3496 0 0 0 0.53105 1 2593 2593 6.7232 0.96273 1 + 11165 17844 6892 6898 13888 13888 -0.10533440374820202 GTKIVSVER 9 Unmodified _GTKIVSVER_ 0 0 0 ENSG00000168497|ENST00000304141|CAVIN2 ENSG00000168497|ENST00000304141|CAVIN2 ENSG00000168497|ENST00000304141|CAVIN2 MULTI-MSMS UPN46_class_I_Rep_3 1 494.7928161621094 2 494.792924 987.571294 -0.025558 -1.2646E-05 0.030038 1.4863E-05 0.0044808 2.2171E-06 494.7929367579599 26.725 0.96405 26.725 26.406 27.37 0 152 79 3 0 0 0 0.14474 3 3891 3848;3891;3929 26.021 6.6588 1 177240 11166 4377 6893 6899 13889;13890;13891 13890 0.07701145334567627 GTKKQFQKF 9 Unmodified _GTKKQFQKF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN47_class_I_Rep_3 4 556.3165283203125 2 556.316566 1110.61858 -0.40338 -0.00022441 0.11597 6.4518E-05 -0.28741 -0.00015989 556.3165699210275 15.784 0.28477 19.15 18.965 19.25 3.3659 46 30 2 0 0 0 0.43153 1 867 867 6.2058 0.97511 1 32364 11167 3252 6894 6900 13892 13892 0.0676942460556802 GTKKQFQKF 9 Unmodified _GTKKQFQKF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 556.316566 1110.61858 -0.098586 -5.4845E-05 -0.24182 -0.00013453 -0.34041 -0.00018938 556.316347904891 15.451 0.40023 18.947 18.857 19.257 3.4968 -0.078763 -9.1593E-05 NaN 6.2058 69 45 2 NaN NaN NaN NaN 0 NaN NaN 0 71477 11168 3252 6894 6900 0.0676942460556802 GTKKQFQKF 9 Unmodified _GTKKQFQKF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 556.316566 1110.61858 0.04809 2.6753E-05 -0.29479 -0.000164 -0.2467 -0.00013724 556.3163425790298 15.595 0.32585 18.981 18.884 19.209 3.3864 -0.045226 -0.00015053 NaN 6.2058 53 35 2 NaN NaN NaN NaN 0 NaN NaN 0 39738 11169 3252 6894 6900 0.0676942460556802 GTKKVHVI 8 Unmodified _GTKKVHVI_ 0 0 0 ENSG00000179218|ENST00000316448|CALR;CALR|p.T173Nfs*11|1|0.41|ENSG00000179218|chr19:12940266-12940267|-/A|frameshift_variant;ENST00000590325.1_1_19:13049472-13051084:+|nuORF ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF ENSG00000179218|ENST00000316448|CALR MSMS UPN47_class_I_Rep_3 4 441.26763916015625 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 31.308 1 34.607 34.107 35.107 3.2991 0 0 0 0.39624 1 5318 5318 9.3474 3.587 1 11170 4853;7609 6895 6901 13893 13893 0.10438385376664883 GTKQPLVSL 9 Unmodified _GTKQPLVSL_ 0 0 0 REV__L1MA6_dup4746|chr15:68117386-68118044:-|3.305259044304017|0.0769626848494149|5.42|151.0|31|1|anti-sense REV__L1MA6_dup4746|chr15:68117386-68118044:-|3.305259044304017|0.0769626848494149|5.42|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7843322753906 2 471.784567 941.554582 NaN NaN NaN NaN NaN NaN NaN 46.882 1 50.631 50.131 51.131 3.7494 0 0 0 0.3824 1 9212 9212 4.897 0 1 + 11171 25471 6896 6902 13894 13894 0.08146644448606821 GTKQQEIVVSR 11 Unmodified _GTKQQEIVVSR_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN46_class_I_Rep_3 1 415.56982421875 3 415.570093 1243.68845 -0.28273 -0.0001175 0.039241 1.6307E-05 -0.24349 -0.00010119 415.5700566790986 25.373 0.7168 25.373 25.004 25.72 0 173 66 3 0 0 0 0.26298 1 3469 3469 16.1 4.8286 1 194970 11172 5270 6897 6903 13895 13895 0.07635258483514917 GTKVKVKYG 9 Unmodified _GTKVKVKYG_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS UPN48_class_I_Rep_3 7 490.3013916015625 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 65.87 1 69.377 68.877 69.877 3.5077 0 0 0 0.39518 1 14918 14918 1.8442 0 1 11173 837 6898 6904 13896 13896 0.0960663720256889 GTLCCLCGYDE 11 Unmodified _GTLCCLCGYDE_ 0 0 0 REV__L1PBa_dup1961|chr17:47355870-47357177:-|1.1106930760420506|0.090798038891631|3.61|151.0|64|1|anti-sense REV__L1PBa_dup1961|chr17:47355870-47357177:-|1.1106930760420506|0.090798038891631|3.61|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_2 3 588.7246704101562 2 588.722135 1175.42972 NaN NaN NaN NaN NaN NaN NaN 65.239 1 68.494 67.994 68.994 3.2556 0 0 0 0.38417 1 15596 15596 1.1933 0.39971 1 + 11174 30643 6899 6905 13897 13897 -0.15098100136742687 GTLDLQVQFG 10 Unmodified _GTLDLQVQFG_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN47_class_I_Rep_3 4 539.282470703125 2 539.282389 1076.55022 NaN NaN NaN NaN NaN NaN NaN 73.686 1 76.923 76.423 77.423 3.2363 0 0 0 0.53105 1 18212 18212 5.2969 0 1 + 11175 20513 6900 6906 13898 13898 0.01501135235048423 GTLDSVLRY 9 Unmodified _GTLDSVLRY_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN48_class_I_Rep_1 5 512.2770385742188 2 512.277106 1022.53966 0.30505 0.00015627 -0.10485 -5.3712E-05 0.2002 0.00010256 512.276985418724 55.781 0.7645 59.282 58.989 59.754 3.5014 129 54 3 0 0 0 0.0094161 5 11928 11885;11928;11967;12007;12048 70.332 16.499 1 628410 11176 3242 6901 6907 13899;13900;13901;13902;13903 13900 0.029291525806115715 GTLDSVLRY 9 Unmodified _GTLDSVLRY_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN48_class_I_Rep_2 6 512.2771606445312 2 512.277106 1022.53966 0.44636 0.00022866 -0.027698 -1.4189E-05 0.41866 0.00021447 512.2769755652811 55.806 0.81816 59.362 58.916 59.734 3.5559 126 56 3 0 0 0 0.0063213 5 11916 11827;11874;11916;11954;11997 89.401 26.828 1 549270 11177 3242 6901 6907 13904;13905;13906;13907;13908 13906 0.029291525806115715 GTLDSVLRY 9 Unmodified _GTLDSVLRY_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN48_class_I_Rep_3 7 512.2771606445312 2 512.277106 1022.53966 0.19317 9.8956E-05 0.15242 7.808E-05 0.34559 0.00017704 512.2771068460744 55.737 0.72172 59.292 58.899 59.621 3.5554 124 49 3 0 0 0 0.0053074 5 11792 11746;11792;11833;11877;11916 106.94 25.05 1 890310 11178 3242 6901 6907 13909;13910;13911;13912;13913 13910 0.029291525806115715 GTLKKILAL 9 Unmodified _GTLKKILAL_ 0 0 0 nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF nc|ENSG00000054654|Q8WXH0|SYNE2 nc|ENSG00000054654|Q8WXH0|SYNE2 MULTI-MSMS UPN48_class_I_Rep_1 5 478.8288269042969 2 478.828778 955.643003 0.10924 5.2305E-05 0.15251 7.3028E-05 0.26175 0.00012533 478.82874987371054 49.327 1.17 52.852 52.484 53.654 3.5246 183 81 3 0 0 0 0.097406 4 9971 9884;9971;10008;10158 34.402 0 1 596790 11179 935 6902 6908 13914;13915;13916;13917 13915 0.16340684759086344 GTLKKILAL 9 Unmodified _GTLKKILAL_ 0 0 0 nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF nc|ENSG00000054654|Q8WXH0|SYNE2 nc|ENSG00000054654|Q8WXH0|SYNE2 MULTI-MSMS UPN48_class_I_Rep_2 6 478.828857421875 2 478.828778 955.643003 0.16611 7.9537E-05 0.040829 1.955E-05 0.20694 9.9087E-05 478.82875497887716 49.275 1.1715 52.992 52.432 53.604 3.7175 135 74 2 0 0 0 0.21527 2 9881 9881;10061 19.257 0 1 342980 11180 935 6902 6908 13918;13919 13918 0.16340684759086344 GTLKKILAL 9 Unmodified _GTLKKILAL_ 0 0 0 nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF nc|ENSG00000054654|Q8WXH0|SYNE2 nc|ENSG00000054654|Q8WXH0|SYNE2 MULTI-MSMS UPN48_class_I_Rep_3 7 478.82861328125 2 478.828778 955.643003 0.12016 5.7536E-05 0.02914 1.3953E-05 0.1493 7.1489E-05 478.8286902081849 49.43 0.67498 53.059 52.866 53.541 3.6291 93 43 3 0 0 0 0.097406 3 9879 9879;9933;9969 34.402 0 1 292360 11181 935 6902 6908 13920;13921;13922 13920 0.16340684759086344 GTLLSWVTV 9 Unmodified _GTLLSWVTV_ 0 0 0 HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.2767333984375 2 488.279118 974.543683 -0.13368 -6.5272E-05 -1.6223 -0.00079211 -1.7559 -0.00085738 488.27715680267016 40.962 0.42784 44.327 44.032 44.46 3.3655 53 37 2 0 0 0 0.42249 1 8216 8216 6.7232 0 1 57395 11182 7955 6903 6909 13923 13923 0.05539242074326012 GTLLSWVTV 9 Unmodified _GTLLSWVTV_ 0 0 0 HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 488.279118 974.543683 -0.26397 -0.00012889 -0.70025 -0.00034192 -0.96422 -0.00047081 488.2775410895879 40.567 0.48637 44.239 43.945 44.431 3.6719 -0.074105 0.00045984 NaN 6.7232 60 37 2 NaN NaN NaN NaN 0 NaN NaN 0 63174 11183 7955 6903 6909 0.05539242074326012 GTLLSWVTV 9 Unmodified _GTLLSWVTV_ 0 0 0 HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 488.279118 974.543683 -0.13368 -6.5272E-05 -1.6223 -0.00079211 -1.7559 -0.00085738 488.27715680267016 40.962 0.42784 44.327 44.032 44.46 3.3655 0.01443 -0.00044055 NaN 6.7232 53 37 2 NaN NaN NaN NaN 0 NaN NaN 0 57395 11184 7955 6903 6909 0.05539242074326012 GTLLSWVTV 9 Unmodified _GTLLSWVTV_ 0 0 0 HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense HAL1ME_dup2004|chr3:177138605-177139239:+|2.1723919986798674|0.0109718567077729|7.63|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 488.279118 974.543683 -0.25792 -0.00012593 -1.3104 -0.00063986 -1.5683 -0.00076579 488.27743788116805 41.135 0.45336 44.372 44.024 44.477 3.2372 0.059675 -0.00013603 NaN 6.7232 49 33 2 NaN NaN NaN NaN 0 NaN NaN 0 66675 11185 7955 6903 6909 0.05539242074326012 GTLPTSGYGNS 11 Unmodified _GTLPTSGYGNS_ 0 0 0 nc|ENSG00000108813|Q92988-2|DLX4;ENSG00000108813|ENST00000240306|DLX4 nc|ENSG00000108813|Q92988-2|DLX4 nc|ENSG00000108813|Q92988-2|DLX4 MSMS UPN46_class_I_Rep_3 1 527.2479858398438 2 527.246003 1052.47745 NaN NaN NaN NaN NaN NaN NaN 80.76 1 80.76 80.26 81.26 0 0 0 0 0.38417 1 19039 19039 0.96228 0.16864 1 11186 1879 6904 6910 13924 13924 -0.046686185583666884 GTNPAYVNR 9 Unmodified _GTNPAYVNR_ 0 0 0 REV__L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|50|2|sense REV__L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|50|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.71209716796875 2 496.251423 990.488293 -0.025643 -1.2725E-05 -0.048155 -2.3897E-05 -0.073797 -3.6622E-05 496.2513234765009 26.724 0.58111 26.724 26.533 27.114 0 66 45 2 0 0 0 0.43153 2 3906 3906;3909 6.2058 1.3088 1 96900 + 11187 29796 6905 6911 13925;13926 13925 -0.007331713934263462 GTPRLKTKY 9 Unmodified _GTPRLKTKY_ 0 0 0 ENSG00000113205|ENST00000231130|PCDHB3 ENSG00000113205|ENST00000231130|PCDHB3 ENSG00000113205|ENST00000231130|PCDHB3 MSMS UPN48_class_I_Rep_2 6 532.319091796875 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 91.56 1 95.315 94.815 95.815 3.7554 0 0 0 0.37891 1 21799 21799 5.7319 0.43497 1 11188 2034 6906 6912 13927 13927 0.0897742460556401 GTRDSGPTR 9 Unmodified _GTRDSGPTR_ 0 0 0 ENST00000544487.5_1_16:30768821-30771097:-|nuORF ENST00000544487.5_1_16:30768821-30771097:-|nuORF ENST00000544487.5_1_16:30768821-30771097:-|nuORF MSMS UPN47_class_I_Rep_1 2 473.7369689941406 2 473.73868 945.462806 NaN NaN NaN NaN NaN NaN NaN 105.36 1 109.1 108.6 109.6 3.7395 0 0 0 0.37476 1 25861 25861 6.7232 0 1 11189 7368 6907 6913 13928 13928 -0.012106459158644611 GTRKELHE 8 Unmodified _GTRKELHE_ 0 0 0 REV__MER11C_dup421|chr7:152351585-152352653:+|1.179077119307604|0.0136873614269065|6.43|151.0|6|1|sense REV__MER11C_dup421|chr7:152351585-152352653:+|1.179077119307604|0.0136873614269065|6.43|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 485.3486022949219 2 485.259248 968.503943 NaN NaN NaN NaN NaN NaN NaN 60.911 1 60.911 60.411 61.411 0 0 0 0 0.40643 1 13531 13531 2.0598 0.40713 1 + 11190 31102 6908 6914 13929 13929 0.018431151236086407 GTRLWLAPCEE 11 Unmodified _GTRLWLAPCEE_ 0 0 0 REV__ENST00000339276.5_1_1:27190745-27190907:+|nuORF REV__ENST00000339276.5_1_1:27190745-27190907:+|nuORF MSMS UPN46_class_I_Rep_3 1 637.8113403320312 2 637.81353 1273.61251 NaN NaN NaN NaN NaN NaN NaN 90.166 1 90.166 89.666 90.666 0 0 0 0 0.38417 1 21732 21732 1.0715 0.5467 1 + 11191 21808 6909 6915 13930 13930 -0.013354616882907067 GTRQGCPLLHS 11 Unmodified _GTRQGCPLLHS_ 0 0 0 L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|23|1|sense L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|23|1|sense L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|23|1|sense MSMS UPN47_class_I_Rep_2 3 584.7985229492188 2 584.798214 1167.58188 NaN NaN NaN NaN NaN NaN NaN 60.311 1 63.584 63.084 64.084 3.2731 0 0 0 0.38417 1 14104 14104 1.0715 0 1 11192 14887 6910 6916 13931 13931 0.004788047173406085 GTSLDDECWD 10 Unmodified _GTSLDDECWD_ 0 0 0 REV__nc|ENSG00000165304|Q14680-3|MELK REV__nc|ENSG00000165304|Q14680-3|MELK MSMS UPN47_class_I_Rep_1 2 570.71337890625 2 570.711136 1139.40772 NaN NaN NaN NaN NaN NaN NaN 31.721 1 35.45 34.95 35.95 3.7293 0 0 0 0.53105 1 5362 5362 1.4819 0.68827 1 + 11193 20116 6911 6917 13932 13932 -0.15640865289310568 GTSSILFWLL 10 Unmodified _GTSSILFWLL_ 0 0 0 L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|216|2|anti-sense L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|216|2|anti-sense L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|216|2|anti-sense MSMS UPN48_class_I_Rep_1 5 568.8228149414062 2 568.82115 1135.62775 NaN NaN NaN NaN NaN NaN NaN 70.382 1 73.841 73.341 74.341 3.4598 0 0 0 0.53105 1 16398 16398 3.9444 0 1 11194 14900 6912 6918 13933 13933 0.06535773171253823 GTSSVIVSR 9 Unmodified _GTSSVIVSR_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS UPN46_class_I_Rep_3 1 453.255859375 2 453.256174 904.497795 -0.11728 -5.3157E-05 -0.26051 -0.00011808 -0.37778 -0.00017123 453.25596266505084 27.66 1.1365 27.66 27.331 28.468 0 187 86 3 0 0 0 0.0070648 5 4204 4060;4094;4168;4204;4243 87.258 37.704 1 692780 11195 1104 6913 6919 13934;13935;13936;13937;13938 13937 0.0417259689210141 GTSSVIVSR 9 Unmodified _GTSSVIVSR_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MSMS UPN48_class_I_Rep_2 6 453.2554626464844 2 453.256174 904.497795 NaN NaN NaN NaN NaN NaN NaN 23.909 1 27.549 27.049 28.049 3.6397 0 0 0 0.35904 1 2688 2688 7.609 1.8771 1 11196 1104 6913 6919 13939 13939 0.0417259689210141 GTSVPKQPYY 10 Unmodified _GTSVPKQPYY_ 0 0 0 REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|54|2|anti-sense REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.2897338867188 2 570.290214 1138.56587 0.36239 0.00020667 -0.031376 -1.7893E-05 0.33102 0.00018878 570.2902372045153 73.53 1.6121 76.916 76.181 77.793 3.3861 453 138 5 0 0 0 0.53004 2 18219 18219;18257 8.1555 8.1555 1 5725200 + 11197 26376 6914 6920 13940;13941 13940 0.0021342175209611014 GTSVPKQPYY 10 Unmodified _GTSVPKQPYY_ 0 0 0 REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|54|2|anti-sense REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2903442382812 2 570.290214 1138.56587 0.44237 0.00025228 -0.14993 -8.5506E-05 0.29243 0.00016677 570.2901850782062 73.686 1.6077 76.991 76.375 77.983 3.3048 459 154 5 0 0 0 0.43106 2 18200 18200;18303 17.113 8.1555 1 7372000 + 11198 26376 6914 6920 13942;13943 13942 0.0021342175209611014 GTSVPKQPYY 10 Unmodified _GTSVPKQPYY_ 0 0 0 REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|54|2|anti-sense REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2900390625 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.53004 1 18386 18386 8.1555 8.1555 1 5554300 + 11199 26376 6914 6920 13944 13944 0.0021342175209611014 GTTFIGFSF 9 Unmodified _GTTFIGFSF_ 0 0 0 ENSG00000171657|ENST00000302548|GPR82 ENSG00000171657|ENST00000302548|GPR82 ENSG00000171657|ENST00000302548|GPR82 MULTI-MSMS UPN48_class_I_Rep_3 7 488.7425537109375 2 488.742368 975.470183 0.20026 9.7877E-05 0.28226 0.00013795 0.48252 0.00023583 488.74205592576016 59.238 0.46021 62.762 62.459 62.919 3.5231 39 30 2 0 0 0 0.28552 1 12895 12895 14.838 0 1 65998 11200 4536 6915 6921 13945 13945 -0.018533063681275053 GTTPKGKKH 9 Unmodified _GTTPKGKKH_ 0 0 0 ENST00000396444.7_2_15:50716769-50731219:+|nuORF ENST00000396444.7_2_15:50716769-50731219:+|nuORF ENST00000396444.7_2_15:50716769-50731219:+|nuORF MSMS UPN47_class_I_Rep_1 2 477.7597961425781 2 477.279983 952.545414 NaN NaN NaN NaN NaN NaN NaN 107.3 1 110.97 110.47 111.47 3.6724 0 0 0 0.38639 1 26290 26290 3.9444 0.3479 1 11201 6567 6916 6922 13946 13946 0.06724295882952447 GTVDELVKK 9 Unmodified _GTVDELVKK_ 0 0 0 REV__nc|ENSG00000166181|Q9BZZ5-3|API5 REV__nc|ENSG00000166181|Q9BZZ5-3|API5 MSMS UPN48_class_I_Rep_1 5 494.8874206542969 2 494.787307 987.560061 NaN NaN NaN NaN NaN NaN NaN 40.244 1 43.749 43.249 44.249 3.5048 0 0 0 0.39428 1 7201 7201 2.0598 0 1 + 11202 20158 6917 6923 13947 13947 0.06578323240432837 GTVIKPLVEY 10 Unmodified _GTVIKPLVEY_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MSMS UPN46_class_I_Rep_3 1 559.826171875 2 559.826432 1117.63831 NaN NaN NaN NaN NaN NaN NaN 109.36 1 109.36 108.86 109.86 0 0 0 0 0.53105 1 26845 26845 6.2058 0 1 11203 4294 6918 6924 13948 13948 0.08419755825661923 GTVLPSAQR 9 Unmodified _GTVLPSAQR_ 0 0 0 ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000486774.1_1_17:25972868-25974145:+|nuORF ENST00000584386.5_1_17:25958291-25974145:+|nuORF ENST00000584386.5_1_17:25958291-25974145:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 464.7638854980469 2 464.764166 927.513779 -0.0078399 -3.6437E-06 -0.27548 -0.00012803 -0.28332 -0.00013168 464.76394448284026 31.163 0.96766 31.163 30.906 31.874 0 121 70 2 0 0 0 0.24936 1 5155 5155 17.113 1.8644 1 284220 11204 4397 6919 6925 13949 13949 0.047123031289856954 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS UPN47_class_I_Rep_1 2 558.272216796875 2 558.272021 1114.52949 0.17609 9.8304E-05 0.58328 0.00032563 0.75936 0.00042393 558.27232346636 47.315 0.64414 51.01 50.685 51.33 3.6951 136 63 3 0 0 0 0.0053074 5 10120 10041;10082;10120;10150;10190 79.596 25.475 1 519700 11205 4706 6920 6926 13950;13951;13952;13953;13954 13952 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS UPN47_class_I_Rep_2 3 558.2728881835938 2 558.272021 1114.52949 0.32828 0.00018327 0.65121 0.00036355 0.97949 0.00054682 558.2722881328882 47.689 0.84753 51.038 50.698 51.546 3.3492 107 76 2 0 0 0 0.0078401 6 10262 10199;10233;10262;10294;10304;10395 96.367 42.534 1 468520 11206 4706 6920 6926 13955;13956;13957;13958;13959;13960 13957 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS UPN47_class_I_Rep_3 4 558.2725219726562 2 558.272021 1114.52949 0.36467 0.00020359 0.44627 0.00024914 0.81094 0.00045273 558.2722219133207 47.758 0.82447 50.998 50.652 51.477 3.2405 138 78 2 0 0 0 0.0078401 5 10299 10262;10299;10328;10365;10441 96.367 33.794 1 362680 11207 4706 6920 6926 13961;13962;13963;13964;13965 13962 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS UPN48_class_I_Rep_1 5 558.2724609375 2 558.272021 1114.52949 0.45755 0.00025544 0.14677 8.1939E-05 0.60432 0.00033737 558.2722050600003 47.662 0.23379 51.184 51.115 51.349 3.5219 26 19 2 0 0 0 0.16799 1 9441 9441 23.79 9.3844 1 127280 11208 4706 6920 6926 13966 13966 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MSMS UPN48_class_I_Rep_2 6 558.2728881835938 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 47.264 1 51.013 50.513 51.513 3.7494 0 0 0 0.20399 1 9322 9322 16.149 3.9084 1 11209 4706 6920 6926 13967 13967 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MSMS UPN48_class_I_Rep_2 6 558.2730712890625 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 47.414 1 51.15 50.65 51.65 3.7361 0 0 0 0.15288 1 9361 9361 19.362 5.4559 1 11210 4706 6920 6926 13968 13968 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MSMS UPN48_class_I_Rep_3 7 558.2725830078125 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 47.482 1 51.118 50.618 51.618 3.6359 0 0 0 0.10427 1 9322 9322 23.79 7.6407 1 11211 4706 6920 6926 13969 13969 -0.02319455144629501 GTVYEDLRY 9 Unmodified _GTVYEDLRY_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 558.272021 1114.52949 0.31302 0.00017475 -1.0473 -0.00058469 -0.7343 -0.00040994 558.7725602597011 47.335 0.06369 50.685 50.647 50.711 3.3502 -0.16245 -0.0017459 NaN 79.596 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 32869 11212 4706 6920 6926 -0.02319455144629501 GTYQLKQGP 9 Unmodified _GTYQLKQGP_ 0 0 0 HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|34|2|sense HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|34|2|sense HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 496.29547119140625 2 496.263999 990.513445 NaN NaN NaN NaN NaN NaN NaN 55.705 1 55.705 55.205 56.205 0 0 0 0 0.39518 1 12115 12115 1.8442 0 1 11213 8008 6921 6927 13970 13970 0.01780883409139733 GTYQPLSTR 9 Unmodified _GTYQPLSTR_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS UPN46_class_I_Rep_3 1 511.766845703125 2 511.766906 1021.51926 0.12395 6.3435E-05 -0.062262 -3.1864E-05 0.061691 3.1571E-05 511.7668206963842 32.981 0.88707 32.981 32.592 33.479 0 134 64 3 0 0 0 0.12306 5 5676 5632;5676;5716;5757;5794 29.437 13.288 1 290190 11214 5667 6922 6928 13971;13972;13973;13974;13975 13972 0.009359819207929831 GTYSLNVTY 9 Unmodified _GTYSLNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN48_class_I_Rep_1 5 509.248046875 2 509.248015 1016.48148 0.33133 0.00016873 -0.052524 -2.6748E-05 0.27881 0.00014198 509.24789972717656 57.654 1.0323 61.148 60.709 61.742 3.4942 190 77 3 0 0 0 0.0069776 5 12482 12442;12482;12519;12556;12600 176.84 77.038 1 1847900 11215 5336 6923 6929 13976;13977;13978;13979;13980 13977 -0.026105290646796675 GTYSLNVTY 9 Unmodified _GTYSLNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN48_class_I_Rep_2 6 509.24810791015625 2 509.248015 1016.48148 0.41698 0.00021235 -0.086962 -4.4285E-05 0.33002 0.00016806 509.2478823136771 57.625 0.86505 61.139 60.757 61.622 3.5142 188 64 4 0 0 0 4.4599E-05 5 12455 12420;12455;12494;12532;12576 155.03 55.227 1 1625900 11216 5336 6923 6929 13981;13982;13983;13984;13985 13982 -0.026105290646796675 GTYSLNVTY 9 Unmodified _GTYSLNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN48_class_I_Rep_3 7 509.2480163574219 2 509.248015 1016.48148 0.20353 0.00010365 0.074321 3.7848E-05 0.27785 0.00014149 509.24795156341855 57.49 0.74277 61.021 60.724 61.466 3.5317 175 62 4 0 0 0 0.0029438 4 12398 12320;12357;12398;12437 149.91 50.115 1 1336500 11217 5336 6923 6929 13986;13987;13988;13989 13988 -0.026105290646796675 GTYVSSVPR 9 Unmodified _GTYVSSVPR_ 0 0 0 ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA ENST00000485901.1_1_6:32974617-32975137:-|nuORF ENST00000485901.1_1_6:32974617-32975137:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 483.2562255859375 2 483.256174 964.497795 0.10238 4.9474E-05 -0.0050167 -2.4243E-06 0.09736 4.705E-05 483.2560781393385 33.905 0.57452 33.905 33.717 34.291 0 76 40 2 0 0 0 0.04399 2 5989 5949;5989 51.415 33.269 1 229420 11218 5507 6924 6930 13990;13991 13991 0.01412596892100737 GTYYPPPRL 9 Unmodified _GTYYPPPRL_ 0 0 0 nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10 nc|ENSG00000155363|Q9HCE1-2|MOV10 nc|ENSG00000155363|Q9HCE1-2|MOV10 MULTI-MSMS UPN48_class_I_Rep_1 5 532.2820434570312 2 532.282192 1062.54983 0.32802 0.0001746 -0.89998 -0.00047904 -0.57196 -0.00030444 532.2815637605825 45.692 0.60172 49.208 48.975 49.576 3.5162 66 41 2 0 0 0 0.28552 1 8849 8849 14.838 2.3067 1 136620 11219 3701 6925 6931 13992 13992 0.021057603058579843 GTYYPPPRL 9 Unmodified _GTYYPPPRL_ 0 0 0 nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10 nc|ENSG00000155363|Q9HCE1-2|MOV10 nc|ENSG00000155363|Q9HCE1-2|MOV10 MULTI-MSMS UPN48_class_I_Rep_3 7 532.28173828125 2 532.282192 1062.54983 0.43407 0.00023105 -1.0074 -0.00053624 -0.57337 -0.0003052 532.2815937292038 45.732 0.48195 49.369 49.048 49.53 3.6369 43 34 2 0 0 0 0.42249 1 8785 8785 6.7232 1.9672 1 156930 11220 3701 6925 6931 13993 13993 0.021057603058579843 GVALSVSLK 9 Unmodified _GVALSVSLK_ 0 0 0 Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|95|1|anti-sense Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|95|1|anti-sense Tigger1_dup6667|chr9:5059966-5062077:-|1.4637887749870118|0.097797515548084|3.9|151.0|95|1|anti-sense MSMS UPN48_class_I_Rep_3 7 437.2674865722656 2 437.273835 872.533118 NaN NaN NaN NaN NaN NaN NaN 48.979 1 52.608 52.108 53.108 3.6291 0 0 0 0.39036 1 9784 9784 2.9952 0.10602 1 11221 33165 6926 6932 13994 13994 0.09175259419907889 GVANKPNL 8 Unmodified _GVANKPNL_ 0 0 0 HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|36|3|sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|36|3|sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 406.73382568359375 2 406.734877 811.455202 NaN NaN NaN NaN NaN NaN NaN 30.504 1 30.504 30.004 31.004 0 0 0 0 0.40404 1 4977 4977 5.2307 0 1 11222 7853 6927 6933 13995 13995 0.04193246554507368 GVDLTGPQLY 10 Unmodified _GVDLTGPQLY_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MSMS UPN47_class_I_Rep_1 2 531.77783203125 2 531.776939 1061.53933 0.33629 0.00017883 0.43121 0.00022931 0.7675 0.00040814 531.7771832318086 64.494 0.49611 67.849 67.665 68.162 3.3557 86 50 2 0 0 0 0.44401 2 15330 15330;15375 16.149 6.0752 1 136970 11223 5554 6928 6934 13996;13997 13996 0.011017328607749732 GVDLTGPQLY 10 Unmodified _GVDLTGPQLY_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MSMS UPN47_class_I_Rep_2 3 531.7775268554688 2 531.776939 1061.53933 0.21929 0.00011661 0.43397 0.00023077 0.65325 0.00034739 531.777099956038 64.782 0.69995 68.037 67.684 68.384 3.2556 82 55 2 0 0 0 0.30625 2 15423 15423;15471 31.268 3.6395 1 181360 11224 5554 6928 6934 13998;13999 13998 0.011017328607749732 GVDLTGPQLY 10 Unmodified _GVDLTGPQLY_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MSMS UPN47_class_I_Rep_3 4 531.7767333984375 2 531.776939 1061.53933 0.38227 0.00020328 0.20477 0.00010889 0.58703 0.00031217 531.7771323470695 64.77 0.60997 67.95 67.719 68.329 3.1795 78 48 2 0 0 0 0.28952 3 15481 15481;15497;15541 34.932 16.786 1 159130 11225 5554 6928 6934 14000;14001;14002 14000 0.011017328607749732 GVEILGKP 8 Unmodified _GVEILGKP_ 0 0 0 REV__MER21-int_dup304|chr6:2320245-2320823:-|1.4011848340016326|0.0112820835223065|6.96|151.0|9|2|sense REV__MER21-int_dup304|chr6:2320245-2320823:-|1.4011848340016326|0.0112820835223065|6.96|151.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 406.74749755859375 2 406.747453 811.480354 0.027095 1.1021E-05 0.40659 0.00016538 0.43369 0.0001764 406.747465481426 46.69 0.46942 46.69 46.431 46.9 0 66 46 2 0 0 0 0.82752 1 9576 9576 16.942 0 1 113540 + 11226 31170 6929 6935 14003 14003 0.06707301357084816 GVEMGFCHVVQ 11 Unmodified _GVEMGFCHVVQ_ 0 0 0 AluJb_dup108703|chr17:50748324-50748623:-|1.113764223669975|0.3689722034662151|1.59|151.0|18|2|anti-sense AluJb_dup108703|chr17:50748324-50748623:-|1.113764223669975|0.3689722034662151|1.59|151.0|18|2|anti-sense AluJb_dup108703|chr17:50748324-50748623:-|1.113764223669975|0.3689722034662151|1.59|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_2 3 603.2781372070312 2 603.275726 1204.5369 NaN NaN NaN NaN NaN NaN NaN 49.954 1 53.297 52.797 53.797 3.3431 0 0 0 0.38417 1 10938 10938 1.1933 0.12188 1 11227 13 6930 6936 14004 14004 -0.057187621402135846 GVEPRLKGKVY 11 Unmodified _GVEPRLKGKVY_ 0 0 0 ENSG00000179023|ENST00000400664|KLHDC7A ENSG00000179023|ENST00000400664|KLHDC7A ENSG00000179023|ENST00000400664|KLHDC7A MULTI-MSMS UPN46_class_I_Rep_3 1 415.9153137207031 3 415.915312 1244.72411 0.069306 2.8825E-05 -0.06681 -2.7787E-05 0.002496 1.0381E-06 415.91528283836374 41.764 0.4317 41.764 41.5 41.932 0 79 51 2 0 0 0 0.66092 1 8175 8175 2.2527 0.79761 1 174810 11228 4843 6931 6937 14005 14005 0.11153340731198114 GVEPSGGTEA 10 Unmodified _GVEPSGGTEA_ 0 0 0 REV__AluSp_dup9973|chr3:128728456-128728762:-|1.2311479052075391|0.0168589726682056|6.19|151.0|6|2|sense REV__AluSp_dup9973|chr3:128728456-128728762:-|1.2311479052075391|0.0168589726682056|6.19|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 452.26922607421875 2 452.206347 902.39814 NaN NaN NaN NaN NaN NaN NaN 36.466 1 36.466 35.966 36.966 0 0 0 0 0.53105 1 6763 6763 1.6526 0.85899 1 + 11229 17103 6932 6938 14006 14006 -0.056962655125062156 GVFGALLSGVG 11 Unmodified _GVFGALLSGVG_ 0 0 0 REV__nc|ENSG00000154122|Q9HCJ1-2|ANKH REV__nc|ENSG00000154122|Q9HCJ1-2|ANKH MULTI-MSMS UPN47_class_I_Rep_2 3 488.77642822265625 2 488.776742 975.538931 0.24904 0.00012172 -0.38973 -0.00019049 -0.1407 -6.8769E-05 488.77647125869726 71.705 0.45763 74.995 74.695 75.153 3.2899 63 36 2 0 0 0 0.59712 1 17492 17492 5.2969 0.39987 1 134560 + 11230 19727 6933 6939 14007 14007 0.05018357931578521 GVFGFPLGR 9 Unmodified _GVFGFPLGR_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS UPN48_class_I_Rep_1 5 475.266357421875 2 475.266345 948.518136 0.18571 8.8261E-05 -0.13097 -6.2248E-05 0.054734 2.6013E-05 475.26624700836254 66.208 0.72942 69.66 69.255 69.984 3.4516 89 48 2 0 0 0 0.090595 3 15128 15016;15087;15128 36.044 19.102 1 326330 11231 4615 6934 6940 14008;14009;14010 14010 0.04181812342562807 GVFGFPLGR 9 Unmodified _GVFGFPLGR_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS UPN48_class_I_Rep_2 6 475.266357421875 2 475.266345 948.518136 0.24663 0.00011722 0.78767 0.00037435 1.0343 0.00049157 475.26619183757515 65.976 0.89171 69.462 69.052 69.943 3.4866 152 62 4 0 0 0 0.18929 4 14967 14967;15033;15074;15118 21.747 10.106 1 676730 11232 4615 6934 6940 14011;14012;14013;14014 14011 0.04181812342562807 GVFGFPLGR 9 Unmodified _GVFGFPLGR_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS UPN48_class_I_Rep_3 7 475.26611328125 2 475.266345 948.518136 0.25234 0.00011993 -0.057631 -2.739E-05 0.19471 9.254E-05 475.2662277138093 65.895 0.77875 69.402 69.034 69.812 3.5077 98 54 2 0 0 0 0.13631 4 14867 14867;14911;14951;14991 26.884 15.243 1 324670 11233 4615 6934 6940 14015;14016;14017;14018 14015 0.04181812342562807 GVFRARLFR 9 Unmodified _GVFRARLFR_ 0 0 0 nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000175215|ENST00000398073|CTDSP2;ENSG00000144677|ENST00000273179|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL nc|ENSG00000144677|O15194-2|CTDSPL MSMS UPN47_class_I_Rep_2 3 561.3404541015625 2 561.338167 1120.66178 NaN NaN NaN NaN NaN NaN NaN 79.369 1 82.724 82.224 83.224 3.3554 0 0 0 0.39428 1 19755 19755 2.0598 0.40713 1 11234 3368 6935 6941 14019 14019 0.10627659173519532 GVFWYNQF 8 Unmodified _GVFWYNQF_ 0 0 0 HERVIP10F-int_dup83|chr3:197244554-197246823:-|1.1311377542314112|0.0521212442300762|4.44|151.0|67|1|anti-sense HERVIP10F-int_dup83|chr3:197244554-197246823:-|1.1311377542314112|0.0521212442300762|4.44|151.0|67|1|anti-sense HERVIP10F-int_dup83|chr3:197244554-197246823:-|1.1311377542314112|0.0521212442300762|4.44|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_2 3 530.7355346679688 2 530.747985 1059.48142 NaN NaN NaN NaN NaN NaN NaN 20.358 1 23.766 23.266 24.266 3.4074 0 0 0 0.40738 1 2097 2097 0.79363 0 1 11235 8210 6936 6942 14020 14020 -0.045944842740027525 GVGIAPKVY 9 Unmodified _GVGIAPKVY_ 0 0 0 HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|29|1|sense HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|29|1|sense HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|29|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2686767578125 2 452.268553 902.522553 -0.10706 -4.8422E-05 0.092326 4.1756E-05 -0.014738 -6.6655E-06 452.2686644367865 28.298 0.12396 28.298 28.249 28.373 0 14 6 3 0 0 0 0.48643 1 4329 4329 2.0598 1.2661 1 96569 11236 8332 6937 6943 14021 14021 0.06739276765472368 GVGKQTNQNC 10 Unmodified _GVGKQTNQNC_ 0 0 0 HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|33|2|sense HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|33|2|sense HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|33|2|sense MSMS UPN48_class_I_Rep_3 7 524.746337890625 2 524.745647 1047.47674 NaN NaN NaN NaN NaN NaN NaN 22.264 1 25.978 25.478 26.478 3.7144 0 0 0 0.53105 1 2246 2246 1.3295 0.5359 1 11237 8093 6938 6944 14022 14022 -0.045097364790763095 GVGLAFVTFLK 11 Unmodified _GVGLAFVTFLK_ 0 0 0 REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 575.8432006835938 2 576.344792 1150.67503 0.4263 0.00024569 -0.23607 -0.00013606 0.19023 0.00010964 576.344654200442 84.041 0.25307 87.606 87.418 87.671 3.5655 44 31 2 0 0 0 22.551 1 21035 21035 5.7319 0 1 85131 + 11238 22755 6939 6945 14023 14023 0.10572052442216773 GVGLAFVTFLK 11 Unmodified _GVGLAFVTFLK_ 0 0 0 REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF MSMS UPN48_class_I_Rep_2 6 576.3604736328125 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 83.91 1 87.591 87.091 88.091 3.6814 0 0 0 0.38417 1 19958 19958 1.4819 0 1 + 11239 22755 6939 6945 14024 14024 0.10572052442216773 GVGLAFVTFLK 11 Unmodified _GVGLAFVTFLK_ 0 0 0 REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 576.344792 1150.67503 0.42058 0.0002424 -0.24628 -0.00014194 0.17429 0.00010045 576.3446155656599 83.985 0.079674 87.583 87.549 87.629 3.5973 -0.011818 -6.4155E-06 NaN 5.7319 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 92480 + 11240 22755 6939 6945 0.10572052442216773 GVGLLNTGSYY 11 Unmodified _GVGLLNTGSYY_ 0 0 0 nc|ENSG00000164430|Q8N884-2|CGAS;ENSG00000164430|ENST00000370315|CGAS nc|ENSG00000164430|Q8N884-2|CGAS nc|ENSG00000164430|Q8N884-2|CGAS MULTI-MSMS UPN47_class_I_Rep_3 4 572.7898559570312 2 572.287671 1142.56079 0.36659 0.00020979 0.23923 0.00013691 0.60582 0.0003467 572.2876768640289 60.111 0.85489 63.276 62.9 63.754 3.1651 90 54 2 0 0 0 0.62748 1 14014 14014 4.5289 0.19963 1 230200 11241 4111 6940 6946 14025 14025 -0.004788821105194074 GVGLWLAPR 9 Unmodified _GVGLWLAPR_ 0 0 0 REV__ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|151|2|anti-sense REV__ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|151|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.80389404296875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 41.142 1 41.142 40.642 41.642 0 0 0 0 0.26661 1 8038 8038 12.532 3.1841 1 + 11242 23262 6941 6947 14026 14026 0.07525787750932977 GVIGIYLVWA 10 Unmodified _GVIGIYLVWA_ 0 0 0 MER57D_dup118|chr4:153687475-153687915:+|1.5288366921207115|0.1110136601326708|3.78|149.0|22|1|anti-sense MER57D_dup118|chr4:153687475-153687915:+|1.5288366921207115|0.1110136601326708|3.78|149.0|22|1|anti-sense MER57D_dup118|chr4:153687475-153687915:+|1.5288366921207115|0.1110136601326708|3.78|149.0|22|1|anti-sense MSMS UPN48_class_I_Rep_1 5 545.8187255859375 2 545.81841 1089.62227 NaN NaN NaN NaN NaN NaN NaN 82.013 1 85.589 85.089 86.089 3.5753 0 0 0 0.53105 1 19576 19576 4.3292 0.38484 1 11243 16129 6942 6948 14027 14027 0.08104094379405069 GVIHYTKS 8 Unmodified _GVIHYTKS_ 0 0 0 REV__L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|156|3|sense REV__L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|156|3|sense MSMS UPN48_class_I_Rep_2 6 452.74884033203125 2 452.747985 903.481417 NaN NaN NaN NaN NaN NaN NaN 34.085 1 37.746 37.246 38.246 3.6607 0 0 0 0.40581 1 5455 5455 2.8892 0 1 + 11244 29770 6943 6949 14028 14028 0.02581515726001271 GVKASRLFI 9 Unmodified _GVKASRLFI_ 0 0 0 L1MB8_dup9117|chrX:77587219-77588485:+|1.4249344530151613|0.0232424118626657|5.94|151.0|33|2|sense L1MB8_dup9117|chrX:77587219-77588485:+|1.4249344530151613|0.0232424118626657|5.94|151.0|33|2|sense L1MB8_dup9117|chrX:77587219-77588485:+|1.4249344530151613|0.0232424118626657|5.94|151.0|33|2|sense MSMS UPN48_class_I_Rep_2 6 495.8060607910156 2 495.808377 989.6022 NaN NaN NaN NaN NaN NaN NaN 82.106 1 85.775 85.275 86.275 3.669 0 0 0 0.39598 1 19500 19500 1.6526 0.85899 1 11245 11041 6944 6950 14029 14029 0.1069834343944649 GVKPKMKI 8 Unmodified _GVKPKMKI_ 0 0 0 REV__L1M4c_dup889|chr4:139435259-139436171:-|1.5524902454483147|0.0579340651785636|4.74|151.0|5|1|sense REV__L1M4c_dup889|chr4:139435259-139436171:-|1.5524902454483147|0.0579340651785636|4.74|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 450.7886047363281 2 450.788598 899.562644 NaN NaN NaN NaN NaN NaN NaN 38.816 1 42.054 41.554 42.554 3.238 0 0 0 0.40604 1 7599 7599 2.5775 0 1 + 11246 24610 6945 6951 14030 14030 0.10884500164388555 GVKSKNPL 8 Unmodified _GVKSKNPL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|115|3|anti-sense ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MSMS UPN46_class_I_Rep_3 1 421.7581481933594 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 18.912 1 18.912 18.412 19.412 0 0 0 0 0.40604 1 1724 1724 2.5775 0.27475 1 11247 2763 6946 6952 14031 14031 0.07506106105654453 GVKSKNPL 8 Unmodified _GVKSKNPL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|115|3|anti-sense ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MSMS UPN46_class_I_Rep_3 1 421.75732421875 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 27.113 1 27.113 26.613 27.613 0 0 0 0 0.40604 1 3980 3980 2.5775 0.27475 1 11248 2763 6946 6952 14032 14032 0.07506106105654453 GVKSKNPL 8 Unmodified _GVKSKNPL_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|115|3|anti-sense ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MSMS UPN46_class_I_Rep_3 1 421.7580261230469 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 31.691 1 31.691 31.191 32.191 0 0 0 0 0.4044 1 5328 5328 4.756 0 1 11249 2763 6946 6952 14033 14033 0.07506106105654453 GVKSPLIE 8 Unmodified _GVKSPLIE_ 0 0 0 REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF MSMS UPN46_class_I_Rep_3 1 421.7584228515625 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 30.333 1 30.333 29.833 30.833 0 0 0 0 0.40625 1 4925 4925 2.3027 0.24298 1 + 11250 21598 6947 6953 14034 14034 0.06383284011519663 GVKTKQIK 8 Unmodified _GVKTKQIK_ 0 0 0 nc|ENSG00000176748|P0C646|OR52Z1P nc|ENSG00000176748|P0C646|OR52Z1P nc|ENSG00000176748|P0C646|OR52Z1P MSMS UPN48_class_I_Rep_3 7 451.29498291015625 2 451.295102 900.575651 NaN NaN NaN NaN NaN NaN NaN 37.452 1 41.115 40.615 41.615 3.663 0 0 0 0.40625 1 6316 6316 2.3027 0.24298 1 11251 16761 6948 6954 14035 14035 0.12138654548130035 GVKVDKATF 9 Unmodified _GVKVDKATF_ 0 0 0 ENSG00000111348|ENST00000228945|ARHGDIB ENSG00000111348|ENST00000228945|ARHGDIB ENSG00000111348|ENST00000228945|ARHGDIB MULTI-MSMS UPN46_class_I_Rep_3 1 482.7768249511719 2 482.776742 963.538931 0.071739 3.4634E-05 0.15644 7.5527E-05 0.22818 0.00011016 482.7765868718154 32.658 0.72631 32.658 32.292 33.018 0 92 51 3 0 0 0 0.079935 3 5615 5572;5615;5653 38.615 20.468 1 239790 11252 1970 6949 6955 14036;14037;14038 14037 0.05570357931549097 GVKVELCR 8 Unmodified _GVKVELCR_ 0 0 0 REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|170|2|anti-sense REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|170|2|anti-sense MSMS UPN46_class_I_Rep_3 1 452.268798828125 2 452.257662 902.500772 NaN NaN NaN NaN NaN NaN NaN 30.409 1 30.409 29.909 30.909 0 0 0 0 0.40404 1 4948 4948 5.2307 0.47466 1 + 11253 25566 6950 6956 14039 14039 0.045621487452422116 GVKVLPRRV 9 Unmodified _GVKVLPRRV_ 0 0 0 ENST00000599893.1_1_19:53284204-53290040:-|nuORF ENST00000599893.1_1_19:53284204-53290040:-|nuORF ENST00000599893.1_1_19:53284204-53290040:-|nuORF MSMS UPN48_class_I_Rep_2 6 512.2832641601562 2 512.342918 1022.67128 NaN NaN NaN NaN NaN NaN NaN 100.75 1 104.49 103.99 104.99 3.7417 0 0 0 0.4007 1 23920 23920 0.52476 0.52476 1 11254 7658 6951 6957 14040 14040 0.16085427459040602 GVKVQEYHIM 10 Unmodified _GVKVQEYHIM_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MSMS UPN46_class_I_Rep_3 1 401.8778991699219 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 22.507 1 22.507 22.007 23.007 0 0 0 0 0.53105 1 2684 2684 0.69767 0.19171 1 11255 3360 6952 6958 14041 14041 0.018577436626628696 GVLFAQKP 8 Unmodified _GVLFAQKP_ 0 0 0 ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B ENSG00000179361|ENST00000346246|ARID3B ENSG00000179361|ENST00000346246|ARID3B MSMS UPN46_class_I_Rep_3 1 430.2560119628906 2 430.255446 858.496338 NaN NaN NaN NaN NaN NaN NaN 41.164 1 41.164 40.664 41.664 0 0 0 0 0.40604 1 8044 8044 2.5775 0 1 11256 4859 6953 6959 14042 14042 0.06143007593993843 GVLIIIELNTK 11 Unmodified _GVLIIIELNTK_ 0 0 0 REV__ENSG00000128052|ENST00000263923|KDR REV__ENSG00000128052|ENST00000263923|KDR MULTI-SECPEP UPN47_class_I_Rep_1 2 404.8958435058594 3 404.923585 1211.74892 -0.44893 -0.00018178 -0.38832 -0.00015724 -0.83724 -0.00033902 404.9234764773079 36.099 0.29579 39.776 39.707 40.002 3.6762 26 20 2 0 0 0 22.551 1 6687 6687 1.4551 0 1 61380 + 11257 18892 6954 6960 14043 14043 0.15151975813864738 GVLLSLYPTV 10 Unmodified _GVLLSLYPTV_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 531.31591796875 2 531.3157 1060.61685 0.37689 0.00020025 0.30387 0.00016145 0.68076 0.0003617 531.3157280122913 60.461 0.44273 63.842 63.699 64.142 3.3815 64 42 2 0 0 0 0.84575 1 14108 14108 22.736 2.3217 1 124890 + 11258 25611 6955 6961 14044 14044 0.08896370796924202 GVLLSLYPTV 10 Unmodified _GVLLSLYPTV_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.3157348632812 2 531.3157 1060.61685 0.29651 0.00015754 0.28906 0.00015358 0.58557 0.00031112 531.3158832063352 60.834 0.27439 64.099 63.867 64.141 3.2654 40 28 2 0 0 0 0.52083 1 14232 14232 9.3831 0.63772 1 154300 + 11259 25611 6955 6961 14045 14045 0.08896370796924202 GVLLSLYPTV 10 Unmodified _GVLLSLYPTV_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense MSMS UPN47_class_I_Rep_2 3 531.3155517578125 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 60.888 1 64.153 63.653 64.653 3.2654 0 0 0 0.53105 1 14273 14273 17.113 1.8644 1 + 11260 25611 6955 6961 14046 14046 0.08896370796924202 GVLLSLYPTV 10 Unmodified _GVLLSLYPTV_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense MSMS UPN47_class_I_Rep_3 4 531.3158569335938 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 60.759 1 63.924 63.424 64.424 3.1651 0 0 0 0.53105 1 14288 14288 17.113 1.8644 1 + 11261 25611 6955 6961 14047 14047 0.08896370796924202 GVLLSLYPTV 10 Unmodified _GVLLSLYPTV_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense MSMS UPN47_class_I_Rep_3 4 531.316162109375 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 61.04 1 64.205 63.705 64.705 3.1651 0 0 0 0.53105 1 14372 14372 13.042 1.5478 1 + 11262 25611 6955 6961 14048 14048 0.08896370796924202 GVLLSLYPTV 10 Unmodified _GVLLSLYPTV_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|179|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 531.3157 1060.61685 0.29651 0.00015754 0.28906 0.00015358 0.58557 0.00031112 531.3158832063352 60.834 0.27439 64.099 63.867 64.141 3.2654 0.12851 -9.1511E-06 NaN 9.3831 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 154300 + 11263 25611 6955 6961 0.08896370796924202 GVLLTRPVI 9 Unmodified _GVLLTRPVI_ 0 0 0 nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A MSMS UPN48_class_I_Rep_2 6 484.3186340332031 2 484.318577 966.622602 NaN NaN NaN NaN NaN NaN NaN 62.958 1 66.432 65.932 66.932 3.4738 0 0 0 0.3824 1 14115 14115 4.897 1.3005 1 11264 2059 6956 6962 14049 14049 0.13795514099274442 GVLPKEVEGRK 11 Unmodified _GVLPKEVEGRK_ 0 0 0 L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|7|3|sense L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|7|3|sense L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|7|3|sense MSMS UPN47_class_I_Rep_2 3 606.3614501953125 2 606.358962 1210.70337 NaN NaN NaN NaN NaN NaN NaN 109.35 1 112.88 112.38 113.38 3.5307 0 0 0 0.38417 1 26633 26633 4.897 1.6157 1 11265 13047 6957 6963 14050 14050 0.10644750351502807 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_1 2 455.771240234375 2 455.77146 909.528367 0.034327 1.5645E-05 -0.093143 -4.2452E-05 -0.058815 -2.6806E-05 455.77151359281487 66.745 0.5062 70.104 69.746 70.253 3.359 47 33 2 0 0 0 0.11683 2 15966 15927;15966 30.637 8.8899 1 75821 11266 4893 6958 6964 14051;14052 14052 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_2 3 455.77093505859375 2 455.77146 909.528367 -0.16375 -7.4632E-05 0.15164 6.9114E-05 -0.012108 -5.5185E-06 455.7715260699683 66.818 0.60361 70.08 69.842 70.445 3.2618 68 44 2 0 0 0 0.082592 1 16093 16093 37.974 16.227 1 72274 11267 4893 6958 6964 14053 14053 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21 nc|ENSG00000246705|Q9BTM1-2|H2AJ nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_3 4 455.771240234375 2 455.77146 909.528367 -0.18587 -8.4714E-05 0.2457 0.00011198 0.059826 2.7267E-05 455.7715900674054 66.899 0.61736 70.09 69.729 70.347 3.1914 63 46 2 0 0 0 0.11683 1 16145 16145 30.637 14.789 1 102510 11268 4893 6958 6964 14054 14054 0.06998375277123614 GVLRWRWCQ 9 Unmodified _GVLRWRWCQ_ 0 0 0 REV__MSTA_dup19178|chr21:33284547-33284896:+|1.1166860545699462|0.1063401925825744|3.39|151.0|11|3|sense REV__MSTA_dup19178|chr21:33284547-33284896:+|1.1166860545699462|0.1063401925825744|3.39|151.0|11|3|sense MSMS UPN47_class_I_Rep_2 3 401.8778381347656 3 401.878315 1202.61312 NaN NaN NaN NaN NaN NaN NaN 16.1 1 19.486 18.986 19.986 3.3864 0 0 0 0.40038 1 974 974 0.26902 0 1 + 11269 31845 6959 6965 14055 14055 0.019914225421189258 GVLSPVYALV 10 Unmodified _GVLSPVYALV_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|167|2|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|167|2|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|167|2|anti-sense MSMS UPN48_class_I_Rep_2 6 509.2138366699219 2 509.302593 1016.59063 NaN NaN NaN NaN NaN NaN NaN 55.534 1 59.09 58.59 59.59 3.5559 0 0 0 0.53105 1 11845 11845 3.5965 0 1 11270 15302 6960 6966 14056 14056 0.08300101625457046 GVLTPIVPTLW 11 Unmodified _GVLTPIVPTLW_ 0 0 0 REV__AluJo_dup5651|chr1:203803608-203803904:-|1.204533822288027|0.0473716845711737|4.67|151.0|1|1|sense REV__AluJo_dup5651|chr1:203803608-203803904:-|1.204533822288027|0.0473716845711737|4.67|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 598.3583984375 2 598.357899 1194.70125 NaN NaN NaN NaN NaN NaN NaN 86.133 1 89.566 89.066 90.066 3.4329 0 0 0 0.38417 1 21425 21425 1.1933 0 1 + 11271 17011 6961 6967 14057 14057 0.11168321613718035 GVLVRIVL 8 Unmodified _GVLVRIVL_ 0 0 0 ENSG00000174529|ENST00000367167|TMEM81 ENSG00000174529|ENST00000367167|TMEM81 ENSG00000174529|ENST00000367167|TMEM81 MULTI-MSMS UPN46_class_I_Rep_3 1 434.80230712890625 2 434.802563 867.590573 0.090079 3.9167E-05 -0.41098 -0.00017869 -0.3209 -0.00013953 434.8023615273827 67.269 0.40508 67.269 66.971 67.376 0 63 38 2 0 0 0 0.82752 1 15272 15272 19.439 4.8573 1 1527300 11272 4686 6962 6968 14058 14058 0.15148146416129293 GVLWHDLA 8 Unmodified _GVLWHDLA_ 0 0 0 HAL1_dup2360|chr2:47873519-47873843:-|1.9342634692002008|0.0093962553788304|7.69|151.0|20|2|anti-sense HAL1_dup2360|chr2:47873519-47873843:-|1.9342634692002008|0.0093962553788304|7.69|151.0|20|2|anti-sense HAL1_dup2360|chr2:47873519-47873843:-|1.9342634692002008|0.0093962553788304|7.69|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 455.7405090332031 2 455.742702 909.470852 NaN NaN NaN NaN NaN NaN NaN 20.525 1 23.875 23.375 24.375 3.3496 0 0 0 0.40604 1 2135 2135 2.5775 0.27475 1 11273 7875 6963 6969 14059 14059 0.012495330715637465 GVNGRHGSAI 10 Unmodified _GVNGRHGSAI_ 0 0 0 MamRep137_dup1208|chr8:129969505-129969964:-|4.502193295412244|0.0379064057954534|6.89|151.0|13|3|sense MamRep137_dup1208|chr8:129969505-129969964:-|4.502193295412244|0.0379064057954534|6.89|151.0|13|3|sense MamRep137_dup1208|chr8:129969505-129969964:-|4.502193295412244|0.0379064057954534|6.89|151.0|13|3|sense MSMS UPN48_class_I_Rep_2 6 484.2640686035156 2 484.25704 966.499526 NaN NaN NaN NaN NaN NaN NaN 44.041 1 47.802 47.302 48.302 3.7617 0 0 0 0.53105 1 8350 8350 22.736 4.5899 1 11274 15739 6964 6970 14060 14060 0.014936507007064392 GVNSGRGY 8 Unmodified _GVNSGRGY_ 0 0 0 L1MA3_dup1329|chr3:15546094-15547386:-|1.009616650369987|0.0456779338168055|4.47|151.0|23|2|sense L1MA3_dup1329|chr3:15546094-15547386:-|1.009616650369987|0.0456779338168055|4.47|151.0|23|2|sense L1MA3_dup1329|chr3:15546094-15547386:-|1.009616650369987|0.0456779338168055|4.47|151.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.1983337402344 2 405.198659 808.382765 -0.13243 -5.3661E-05 1.5551 0.00063012 1.4226 0.00057646 405.1984274426429 32.946 0.19653 32.946 32.785 32.982 0 14 10 2 0 0 0 0.82752 1 5710 5710 2.8892 0 1 41050 11275 9473 6965 6971 14061 14061 -0.029090875190604493 GVPFFSSLR 9 Unmodified _GVPFFSSLR_ 0 0 0 nc|ENSG00000005381|P05164-3|MPO;ENSG00000005381|ENST00000225275|MPO nc|ENSG00000005381|P05164-3|MPO nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS UPN48_class_I_Rep_1 5 505.2770690917969 2 505.276909 1008.53927 0.34619 0.00017492 -0.14541 -7.3474E-05 0.20078 0.00010145 505.27683392637925 62.968 1.2462 66.43 65.969 67.215 3.4625 272 93 4 0 0 0 0.022868 5 14140 14059;14098;14140;14186;14224 61.602 27.2 1 3307900 11276 698 6966 6972 14062;14063;14064;14065;14066 14064 0.035337776514325014 GVPFFSSLR 9 Unmodified _GVPFFSSLR_ 0 0 0 nc|ENSG00000005381|P05164-3|MPO;ENSG00000005381|ENST00000225275|MPO nc|ENSG00000005381|P05164-3|MPO nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS UPN48_class_I_Rep_2 6 505.2770080566406 2 505.276909 1008.53927 0.35201 0.00017786 -0.12613 -6.3732E-05 0.22587 0.00011413 505.2768520333194 62.936 1.1299 66.41 65.848 66.978 3.4738 264 84 4 0 0 0 0.0053074 6 14103 14012;14055;14103;14143;14183;14221 79.596 33.973 1 3989800 11277 698 6966 6972 14067;14068;14069;14070;14071;14072 14069 0.035337776514325014 GVPFFSSLR 9 Unmodified _GVPFFSSLR_ 0 0 0 nc|ENSG00000005381|P05164-3|MPO;ENSG00000005381|ENST00000225275|MPO nc|ENSG00000005381|P05164-3|MPO nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS UPN48_class_I_Rep_3 7 505.2769775390625 2 505.276909 1008.53927 0.28282 0.0001429 -0.10897 -5.5061E-05 0.17385 8.7843E-05 505.27685335839766 62.633 1.2611 66.143 65.751 67.012 3.5104 292 96 4 0 0 0 0.0094161 7 13958 13874;13921;13958;13997;14040;14078;14125 70.332 28.492 1 3127200 11278 698 6966 6972 14073;14074;14075;14076;14077;14078;14079 14075 0.035337776514325014 GVPFKKRRR 9 Unmodified _GVPFKKRRR_ 0 0 0 L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|385|3|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|385|3|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|385|3|anti-sense MSMS UPN47_class_I_Rep_1 2 572.3641967773438 2 572.364716 1142.71488 NaN NaN NaN NaN NaN NaN NaN 112.41 1 115.98 115.48 116.48 3.572 0 0 0 0.40038 1 27721 27721 0.6015 0.076735 1 11279 12022 6967 6973 14080 14080 0.14923036956179203 GVPHDSLS 8 Unmodified _GVPHDSLS_ 0 0 0 REV__nc|ENSG00000135824|P57771-2|RGS8 REV__nc|ENSG00000135824|P57771-2|RGS8 MULTI-SECPEP UPN46_class_I_Rep_3 1 405.9018249511719 2 406.200867 810.387182 -0.38944 -0.00015819 -3.3665 -0.0013675 -3.7559 -0.0015257 406.20085233369633 21.309 0.096481 21.309 21.245 21.342 0 11 8 2 0 0 0 0.72333 1 2367 2367 0.69038 0.69038 1 13208 + 11280 31987 6968 6974 14081 14081 -0.025596230961355104 GVPVLPAARSP 11 Unmodified _GVPVLPAARSP_ 0 0 0 ENST00000566802.5_1_16:74366359-74378726:-|nuORF ENST00000566802.5_1_16:74366359-74378726:-|nuORF ENST00000566802.5_1_16:74366359-74378726:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.3173217773438 2 532.316566 1062.61858 0.33765 0.00017974 -1.511 -0.00080433 -1.1734 -0.0006246 532.3157623924019 108.01 0.65218 108.01 107.91 108.57 0 82 62 2 0 0 0 0.48412 1 26414 26414 8.1555 0.8663 1 40472000 11281 7494 6969 6975 14082 14082 0.0897742460556401 GVQDKAKY 8 Unmodified _GVQDKAKY_ 0 0 0 nc|ENSG00000156531|Q8IWS0-5|PHF6;nc|ENSG00000156531|Q8IWS0-3|PHF6;ENSG00000156531|ENST00000370803|PHF6 nc|ENSG00000156531|Q8IWS0-5|PHF6 nc|ENSG00000156531|Q8IWS0-5|PHF6 MSMS UPN46_class_I_Rep_3 1 454.4140930175781 2 454.745442 907.476331 NaN NaN NaN NaN NaN NaN NaN 57.92 1 57.92 57.42 58.42 0 0 0 0 0.40604 1 12719 12719 2.5775 0 1 11282 3734 6970 6976 14083 14083 0.01889211863363016 GVQFFRFRR 9 Unmodified _GVQFFRFRR_ 0 0 0 REV__nc|ENSG00000166278|P06681-2|C2 REV__nc|ENSG00000166278|P06681-2|C2 MULTI-MSMS UPN47_class_I_Rep_3 4 404.8958740234375 3 404.896475 1211.66759 -1.2018 -0.0004866 -0.17915 -7.2537E-05 -1.3809 -0.00055914 404.8963685691044 36.452 0.84813 39.707 39.507 40.355 3.2547 125 58 3 0 0 0 0.48007 1 6956 6956 2.7352 0.10396 1 127170 + 11283 20165 6971 6977 14084 14084 0.07022757685149372 GVRAHWTHFW 10 Unmodified _GVRAHWTHFW_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|65|2|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|65|2|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|65|2|sense MSMS UPN46_class_I_Rep_3 1 432.8851318359375 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 98.115 1 98.115 97.615 98.615 0 0 0 0 0.53105 1 23887 23887 0.13989 0 1 11284 13640 6972 6978 14085 14085 -0.00478119211561534 GVRFLLKYQ 9 Unmodified _GVRFLLKYQ_ 0 0 0 ENST00000361618.3_1_4:170927100-170947437:-|nuORF ENST00000361618.3_1_4:170927100-170947437:-|nuORF ENST00000361618.3_1_4:170927100-170947437:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.334759 1122.65496 0.030014 1.6878E-05 0.23407 0.00013163 0.26409 0.0001485 562.3347492833018 23.025 0.072018 23.025 23.005 23.077 0 7 3 3 0 0 0 0.46434 1 2829 2829 4.3292 1.7518 1 165410 11285 6331 6973 6979 14086 14086 0.09854301502286944 GVRKALKQI 9 Unmodified _GVRKALKQI_ 0 0 0 REV__AluSq10_dup617|chr6:15284512-15284785:-|1.0897366029091815|0.0068192234608417|7.32|151.0|2|1|sense REV__AluSq10_dup617|chr6:15284512-15284785:-|1.0897366029091815|0.0068192234608417|7.32|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8350524902344 2 506.834926 1011.6553 0.12709 6.4412E-05 -0.1361 -6.8982E-05 -0.0090159 -4.5696E-06 506.8347589365335 53.609 1.1164 57.193 56.498 57.615 3.5836 154 81 3 0 0 0 0.48846 1 11256 11256 1.8442 0 1 391240 + 11286 17121 6974 6980 14087 14087 0.1499372122210616 GVRPFNPG 8 Unmodified _GVRPFNPG_ 0 0 0 ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-1|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF;nc|ENSG00000132950|Q9UJ78-2|ZMYM5;ENST00000467542.5_1_13:20411687-20425669:-|nuORF;ENST00000535942.5_1_13:20411923-20425669:-|nuORF ENSG00000132950|ENST00000337963|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 MULTI-SECPEP UPN48_class_I_Rep_1 5 422.5923767089844 2 422.22722 842.439886 -0.12021 -5.0756E-05 1.296 0.0005472 1.1758 0.00049644 422.227409236411 49.232 0.038109 52.756 52.73 52.768 3.5239 4 2 2 0 0 0 0.72333 1 9930 9930 0.69038 0 1 26722 11287 2783 6975 6981 14088 14088 0.012363797573243573 GVRQPQAL 8 Unmodified _GVRQPQAL_ 0 0 0 REV__ENST00000341119.9_1_7:87505526-87505643:-|nuORF REV__ENST00000341119.9_1_7:87505526-87505643:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7803039550781 2 434.753601 867.49265 0.069951 3.0412E-05 3.8225 0.0016618 3.8924 0.0016922 434.7564035332986 38.338 0.24844 38.338 38.241 38.49 0 35 23 2 0 0 0 0.72333 1 7273 7273 2.8892 0.31174 1 169120 + 11288 21822 6976 6982 14089 14089 0.053603378201387386 GVRRHFIV 8 Unmodified _GVRRHFIV_ 0 0 0 L1MA8_dup7665|chr11:102434020-102434906:-|2.2589471815228963|0.0236076562890998|6.58|151.0|39|1|anti-sense L1MA8_dup7665|chr11:102434020-102434906:-|2.2589471815228963|0.0236076562890998|6.58|151.0|39|1|anti-sense L1MA8_dup7665|chr11:102434020-102434906:-|2.2589471815228963|0.0236076562890998|6.58|151.0|39|1|anti-sense MSMS UPN47_class_I_Rep_3 4 492.2978820800781 2 492.29851 982.582468 NaN NaN NaN NaN NaN NaN NaN 42.193 1 45.433 44.933 45.933 3.2394 0 0 0 0.40738 1 8634 8634 0.79363 0 1 11289 10062 6977 6983 14090 14090 0.09048012219363955 GVRSRSRS 8 Unmodified _GVRSRSRS_ 0 0 0 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 MSMS UPN46_class_I_Rep_3 1 452.7713623046875 2 452.757207 903.499861 NaN NaN NaN NaN NaN NaN NaN 30.586 1 30.586 30.086 31.086 0 0 0 0 0.40472 1 5003 5003 4.3292 0 1 11290 3079 6978 6984 14091 14091 0.0442507042056377 GVRWSHVH 8 Unmodified _GVRWSHVH_ 0 0 0 L1ME2z_dup6377|chr18:47879529-47880559:-|1.2401937028608787|0.0655812850616411|4.24|151.0|65|2|anti-sense L1ME2z_dup6377|chr18:47879529-47880559:-|1.2401937028608787|0.0655812850616411|4.24|151.0|65|2|anti-sense L1ME2z_dup6377|chr18:47879529-47880559:-|1.2401937028608787|0.0655812850616411|4.24|151.0|65|2|anti-sense MSMS UPN48_class_I_Rep_2 6 489.2572326660156 2 489.256843 976.499132 NaN NaN NaN NaN NaN NaN NaN 39.751 1 43.492 42.992 43.992 3.7413 0 0 0 0.40746 1 7086 7086 0.69038 0 1 11291 12574 6979 6985 14092 14092 0.009942757715066364 GVSIIDGFY 9 Unmodified _GVSIIDGFY_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS UPN47_class_I_Rep_2 3 486.24853515625 2 485.74765 969.480748 0.23328 0.00011332 -0.20171 -9.798E-05 0.031569 1.5335E-05 485.7474820735812 62.445 0.64096 65.704 65.383 66.024 3.2594 64 42 2 0 0 0 0.33654 1 14785 14785 11.64 3.7301 1 111690 + 11292 17768 6980 6986 14093 14093 -0.00521323713712718 GVSIIDGFY 9 Unmodified _GVSIIDGFY_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS UPN47_class_I_Rep_3 4 485.7476806640625 2 485.74765 969.480748 0.10797 5.2444E-05 0.28879 0.00014028 0.39675 0.00019272 485.74758926894634 62.458 0.58536 65.625 65.371 65.956 3.1667 65 34 3 0 0 0 0.25207 1 14800 14800 16.942 0 1 78258 + 11293 17768 6980 6986 14094 14094 -0.00521323713712718 GVSLVRVRG 9 Unmodified _GVSLVRVRG_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000182578|P07333-2|CSF1R;ENST00000502660.5_1_5:149456698-149465990:-|nuORF ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS UPN47_class_I_Rep_3 4 471.79608154296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 97.757 1 101.18 100.68 101.68 3.4216 0 0 0 0.39518 1 24222 24222 1.8442 1.0506 1 11294 4962 6981 6987 14095 14095 0.10392288636899139 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 404.67138671875 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 78.774 1 78.774 78.274 79.274 0 0 0 0 0.40472 1 18468 18468 4.3292 1.7518 1 + 11295 25125 6982 6988 14096 14096 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 404.67181396484375 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 70.874 1 74.246 73.746 74.746 3.3713 0 0 0 0.40472 1 17248 17248 4.3292 1.7518 1 + 11296 25125 6982 6988 14097 14097 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 404.6716003417969 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 71.129 1 74.504 74.004 75.004 3.3751 0 0 0 0.40472 1 17324 17324 4.3292 1.7518 1 + 11297 25125 6982 6988 14098 14098 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 404.6719055175781 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 71.277 1 74.652 74.152 75.152 3.3751 0 0 0 0.40472 1 17368 17368 4.3292 0 1 + 11298 25125 6982 6988 14099 14099 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 404.6717529296875 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 71.655 1 75.03 74.53 75.53 3.3751 0 0 0 0.40472 1 17484 17484 4.3292 1.7518 1 + 11299 25125 6982 6988 14100 14100 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 404.67156982421875 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 72.14 1 75.52 75.02 76.02 3.3799 0 0 0 0.40472 1 17633 17633 4.3292 1.7518 1 + 11300 25125 6982 6988 14101 14101 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 404.671630859375 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 72.386 1 75.766 75.266 76.266 3.3799 0 0 0 0.40472 1 17709 17709 4.3292 1.7518 1 + 11301 25125 6982 6988 14102 14102 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 404.67144775390625 2 404.670031 807.32551 -0.10081 -4.0794E-05 0.48192 0.00019502 0.38111 0.00015423 404.67169102585257 71.778 1.0956 75.244 74.666 75.761 3.466 246 100 4 0 0 0 0.82752 3 16663 16663;16717;16914 4.3292 1.7518 1 1624600 + 11302 25125 6982 6988 14103;14104;14105 14103 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 404.6716003417969 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 72.307 1 75.78 75.28 76.28 3.4732 0 0 0 0.40472 1 16962 16962 4.3292 0 1 + 11303 25125 6982 6988 14106 14106 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 404.6717224121094 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 72.44 1 75.913 75.413 76.413 3.4732 0 0 0 0.40472 1 17001 17001 4.3292 0 1 + 11304 25125 6982 6988 14107 14107 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 404.67169189453125 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 72.529 1 76.093 75.593 76.593 3.5645 0 0 0 0.40472 1 16979 16979 4.3292 0 1 + 11305 25125 6982 6988 14108 14108 -0.08586014111290297 GVSMTCPN 8 Unmodified _GVSMTCPN_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 404.6715393066406 2 404.670031 807.32551 NaN NaN NaN NaN NaN NaN NaN 72.974 1 76.512 76.012 77.012 3.5373 0 0 0 0.40472 1 17049 17049 4.3292 1.7518 1 + 11306 25125 6982 6988 14109 14109 -0.08586014111290297 GVSRHCTS 8 Unmodified _GVSRHCTS_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS UPN46_class_I_Rep_3 1 423.5553894042969 2 423.697969 845.381385 NaN NaN NaN NaN NaN NaN NaN 42.291 1 42.291 41.791 42.791 0 0 0 0 0.40738 1 8361 8361 0.79363 0 1 11307 3266 6983 6989 14110 14110 -0.047490448794633267 GVTKKSTL 8 Unmodified _GVTKKSTL_ 0 0 0 REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|9|1|sense REV__L1MCa_dup744|chr2:99815489-99816549:-|1.441094256931516|0.1480081383518243|3.28|150.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 416.7560729980469 2 417.258185 832.501818 -0.18968 -7.9145E-05 0.0015522 6.4766E-07 -0.18813 -7.8498E-05 417.25850901154257 29.322 0.087982 29.322 29.306 29.394 0 6 5 2 0 0 0 0.72333 1 4640 4640 0.79363 0 1 55459 + 11308 27229 6984 6990 14111 14111 0.07886686385825215 GVTRQKLWKV 10 Unmodified _GVTRQKLWKV_ 0 0 0 L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|194|3|anti-sense L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|194|3|anti-sense L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|194|3|anti-sense MSMS UPN48_class_I_Rep_3 7 405.5837097167969 3 405.583785 1213.72953 NaN NaN NaN NaN NaN NaN NaN 39.872 1 43.527 43.027 44.027 3.655 0 0 0 0.53105 1 7022 7022 0.77653 0 1 11309 13935 6985 6991 14112 14112 0.1312106431362281 GVTYGAQAHLK 11 Unmodified _GVTYGAQAHLK_ 0 0 0 nc|ENSG00000123453|Q9UL12-2|SARDH;ENSG00000123453|ENST00000439388|SARDH nc|ENSG00000123453|Q9UL12-2|SARDH nc|ENSG00000123453|Q9UL12-2|SARDH MSMS UPN46_class_I_Rep_3 1 572.8084716796875 2 572.809105 1143.60366 NaN NaN NaN NaN NaN NaN NaN 55.519 1 55.519 55.019 56.019 0 0 0 0 0.38417 1 12069 12069 1.0715 0.38109 1 11310 2426 6986 6992 14113 14113 0.03759932737534655 GVVARICN 8 Unmodified _GVVARICN_ 0 0 0 AluSz6_dup34641|chr14:20407343-20407640:-|1.1379018927247366|0.2299159602943117|2.31|151.0|9|3|sense AluSz6_dup34641|chr14:20407343-20407640:-|1.1379018927247366|0.2299159602943117|2.31|151.0|9|3|sense AluSz6_dup34641|chr14:20407343-20407640:-|1.1379018927247366|0.2299159602943117|2.31|151.0|9|3|sense MSMS UPN48_class_I_Rep_2 6 416.2275085449219 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 37.175 1 40.878 40.378 41.378 3.7021 0 0 0 0.40604 1 6333 6333 2.5775 0 1 11311 388 6987 6993 14114 14114 0.021253065396649617 GVVFAHNLH 9 Unmodified _GVVFAHNLH_ 0 0 0 MER2_dup7777|chr15:65762681-65762897:+|1.2573883879721328|0.0094871443346474|7.05|151.0|10|1|anti-sense MER2_dup7777|chr15:65762681-65762897:+|1.2573883879721328|0.0094871443346474|7.05|151.0|10|1|anti-sense MER2_dup7777|chr15:65762681-65762897:+|1.2573883879721328|0.0094871443346474|7.05|151.0|10|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 497.26690673828125 2 497.266876 992.519199 0.20271 0.0001008 -0.45815 -0.00022782 -0.25544 -0.00012702 497.2667201206715 40.547 1.0367 44.052 43.702 44.739 3.5048 145 96 2 0 0 0 0.48643 1 7202 7202 2.0598 0.21551 1 186820 11312 15830 6988 6994 14115 14115 0.022640267114638846 GVVKRGRK 8 Unmodified _GVVKRGRK_ 0 0 0 REV__MER45C_dup988|chr15:78913865-78914607:-|1.0248739364063262|0.0431523215963818|4.57|151.0|37|2|anti-sense REV__MER45C_dup988|chr15:78913865-78914607:-|1.0248739364063262|0.0431523215963818|4.57|151.0|37|2|anti-sense MSMS UPN47_class_I_Rep_2 3 450.299560546875 2 450.29851 898.582468 NaN NaN NaN NaN NaN NaN NaN 36.069 1 39.481 38.981 39.981 3.4114 0 0 0 0.40746 1 6724 6724 0.69038 0 1 + 11313 31332 6989 6995 14116 14116 0.12912012219373992 GVVPKKSVN 9 Unmodified _GVVPKKSVN_ 0 0 0 L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|67|1|anti-sense L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|67|1|anti-sense L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|67|1|anti-sense MSMS UPN47_class_I_Rep_1 2 464.2707214355469 2 464.284734 926.554916 NaN NaN NaN NaN NaN NaN NaN 107.74 1 111.41 110.91 111.91 3.6724 0 0 0 0.31276 1 26403 26403 10.074 1.4806 1 11314 11221 6990 6996 14117 14117 0.08870064168468161 GVWPLAAR 8 Unmodified _GVWPLAAR_ 0 0 0 REV__L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|115|1|anti-sense REV__L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|115|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.78033447265625 2 435.253237 868.491922 0.12721 5.5368E-05 2.2109 0.00096229 2.3381 0.0010177 435.25325997483714 43.19 0.10591 43.19 43.12 43.226 0 7 5 2 0 0 0 0.72333 1 8584 8584 2.5775 0 1 72707 + 11315 24988 6991 6997 14118 14118 0.05241543171075591 GVWRPLQL 8 Unmodified _GVWRPLQL_ 0 0 0 REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|107|1|anti-sense REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|107|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7870788574219 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 65.986 1 69.437 68.937 69.937 3.4516 0 0 0 0.40738 1 15054 15054 0.79363 0 1 + 11316 29460 6992 6998 14119 14119 0.07525787750932977 GVWVFVQDWT 10 Unmodified _GVWVFVQDWT_ 0 0 0 REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF MSMS UPN46_class_I_Rep_3 1 412.8716125488281 3 412.873113 1235.59751 NaN NaN NaN NaN NaN NaN NaN 16.61 1 16.61 16.11 17.11 0 0 0 0 0.53105 1 1171 1171 2.086 1.3095 1 + + 11317 17497 6993 6999 14120 14120 -0.010865854939765995 GVYGGSVHEA 10 Unmodified _GVYGGSVHEA_ 0 0 0 ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF;nc|ENSG00000133313|Q96KP4-2|CNDP2 ENSG00000133313|ENST00000324262|CNDP2 ENSG00000133313|ENST00000324262|CNDP2 MULTI-MSMS UPN46_class_I_Rep_3 1 488.22991943359375 2 488.230156 974.445759 -0.017994 -8.7853E-06 0.43839 0.00021404 0.4204 0.00020525 488.2302228484628 27.938 0.35397 27.938 27.732 28.086 0 41 28 2 0 0 0 0.54466 1 4209 4209 6.2058 2.2614 1 60639 11318 2799 6994 7000 14121 14121 -0.04248566521664543 GVYPGHRP 8 Unmodified _GVYPGHRP_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-SECPEP UPN48_class_I_Rep_2 6 441.2975158691406 2 441.732669 881.450785 0.066975 2.9585E-05 -2.0251 -0.00089455 -1.9581 -0.00086497 441.7331341762755 41.331 0.12015 45.082 45.03 45.15 3.7508 16 13 2 0 0 0 0.72333 1 7534 7534 0.79363 0 1 50190 11319 1960 6995 7001 14122 14122 0.005317821316111804 GWAAFGALK 9 Unmodified _GWAAFGALK_ 0 0 0 REV__MER11C_dup781|chr15:51612383-51613441:-|1.1180639432145911|0.0336662393697839|5.05|150.0|12|1|sense REV__MER11C_dup781|chr15:51612383-51613441:-|1.1180639432145911|0.0336662393697839|5.05|150.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 460.7828063964844 2 460.75307 919.491587 NaN NaN NaN NaN NaN NaN NaN 45.179 1 45.179 44.679 45.679 0 0 0 0 0.31276 1 9162 9162 10.074 7.4964 1 + 11320 31111 6996 7002 14123 14123 0.02862123451222942 GWAIPLWLGLI 11 Unmodified _GWAIPLWLGLI_ 0 0 0 L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|129|1|anti-sense L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|129|1|anti-sense L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|129|1|anti-sense MSMS UPN47_class_I_Rep_1 2 619.870849609375 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 88.464 1 92.12 91.62 92.62 3.6563 0 0 0 0.38417 1 22125 22125 1.4819 0.95714 1 11321 8547 6997 7003 14124 14124 0.11296331713219843 GWAKSKHP 8 Unmodified _GWAKSKHP_ 0 0 0 REV__ENST00000211379.9_1_6:31619532-31620470:-|nuORF REV__ENST00000211379.9_1_6:31619532-31620470:-|nuORF MSMS UPN48_class_I_Rep_1 5 455.7501525878906 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 21.313 1 24.866 24.366 25.366 3.5533 0 0 0 0.40738 1 1931 1931 0.79363 0 1 + 11322 21470 6998 7004 14125 14125 0.02372355165709905 GWAKSKHP 8 Unmodified _GWAKSKHP_ 0 0 0 REV__ENST00000211379.9_1_6:31619532-31620470:-|nuORF REV__ENST00000211379.9_1_6:31619532-31620470:-|nuORF MSMS UPN48_class_I_Rep_1 5 455.7496032714844 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 23.384 1 26.945 26.445 27.445 3.5605 0 0 0 0.40738 1 2432 2432 0.79363 0 1 + 11323 21470 6998 7004 14126 14126 0.02372355165709905 GWALFMLA 8 Unmodified _GWALFMLA_ 0 0 0 REV__ENSG00000146530|ENST00000275358|VWDE REV__ENSG00000146530|ENST00000275358|VWDE MSMS UPN47_class_I_Rep_1 2 454.7398376464844 2 454.738574 907.462595 NaN NaN NaN NaN NaN NaN NaN 100.69 1 104.49 103.99 104.99 3.7942 0 0 0 0.40581 1 24879 24879 2.8892 0 1 + 11324 19544 6999 7005 14127 14127 0.005162628305811268 GWALGYGW 8 Unmodified _GWALGYGW_ 0 0 0 REV__ENSG00000147027|ENST00000275954|TMEM47 REV__ENSG00000147027|ENST00000275954|TMEM47 MSMS UPN48_class_I_Rep_3 7 455.4637756347656 2 455.216321 908.418088 NaN NaN NaN NaN NaN NaN NaN 30.72 1 34.435 33.935 34.935 3.7146 0 0 0 0.40581 1 4464 4464 2.8892 0 1 + 11325 19554 7000 7006 14128 14128 -0.0397842499124863 GWAPRPPQ 8 Unmodified _GWAPRPPQ_ 0 0 0 REV__ENSG00000260220|ENST00000638797|CCDC187 REV__ENSG00000260220|ENST00000638797|CCDC187 MULTI-MSMS UPN47_class_I_Rep_1 2 455.2448425292969 2 454.740494 907.466435 0.19077 8.6753E-05 1.7352 0.00078907 1.926 0.00087583 454.7398362258919 100.78 0.17808 104.57 104.5 104.68 3.7942 44 26 2 0 0 0 0.82752 1 24888 24888 2.5775 1.7838 1 47968 + 11326 21393 7001 7007 14129 14129 0.00900068648661545 GWARTCLC 8 Unmodified _GWARTCLC_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|26|3|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|26|3|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 455.2066650390625 2 455.207115 908.399678 NaN NaN NaN NaN NaN NaN NaN 27.185 1 30.747 30.247 31.247 3.5629 0 0 0 0.40738 1 3461 3461 0.79363 0 1 11327 16433 7002 7008 14130 14130 -0.058186262291201274 GWCFMHFY 8 Unmodified _GWCFMHFY_ 0 0 0 REV__ENST00000427814.5_1_7:27870244-27870370:-|nuORF REV__ENST00000427814.5_1_7:27870244-27870370:-|nuORF MSMS UPN47_class_I_Rep_1 2 545.2825317382812 2 545.717316 1089.42008 NaN NaN NaN NaN NaN NaN NaN 50.071 1 53.7 53.2 54.2 3.6285 0 0 0 0.40738 1 10948 10948 0.79363 0 1 + 11328 22274 7003 7009 14131 14131 -0.12105455569280821 GWFCFYTVV 9 Unmodified _GWFCFYTVV_ 0 0 0 LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|27|2|anti-sense;LTR6A_dup91|chr9:62810354-62810882:+|2.560728124751358|0.0733316041245042|5.13|149.0|26|2|anti-sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|27|2|anti-sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 561.2599487304688 2 561.259871 1120.50519 0.44049 0.00024723 -0.50766 -0.00028493 -0.067171 -3.77E-05 561.2595145559537 68.417 0.45115 71.615 71.273 71.724 3.1977 38 27 2 0 0 0 0.48846 1 16591 16591 1.8442 0.36234 1 85754 11329 15698 7004 7010 14132 14132 -0.05024386831837546 GWFKKMKY 8 Unmodified _GWFKKMKY_ 0 0 0 REV__L1MB2_dup1586|chr3:136881521-136882398:-|1.2299135113105384|0.0084823028341529|7.18|151.0|19|2|sense REV__L1MB2_dup1586|chr3:136881521-136882398:-|1.2299135113105384|0.0084823028341529|7.18|151.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 544.2919311523438 2 544.291505 1086.56846 NaN NaN NaN NaN NaN NaN NaN 22.519 1 25.869 25.369 26.369 3.3503 0 0 0 0.40746 1 2708 2708 0.69038 0 1 + 11330 25702 7005 7011 14133 14133 0.02863598676071888 GWFPKVLF 8 Unmodified _GWFPKVLF_ 0 0 0 ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|129|3|anti-sense ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|129|3|anti-sense ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|129|3|anti-sense MSMS UPN48_class_I_Rep_3 7 497.2675476074219 2 497.281463 992.548374 NaN NaN NaN NaN NaN NaN NaN 39.877 1 43.529 43.029 44.029 3.6527 0 0 0 0.40738 1 7023 7023 0.79363 0 1 11331 7703 7006 7012 14134 14134 0.05180171007748413 GWFRHSVG 8 Unmodified _GWFRHSVG_ 0 0 0 REV__ENST00000296978.3_1_6:130686962-130687400:+|nuORF REV__ENST00000296978.3_1_6:130686962-130687400:+|nuORF MSMS UPN46_class_I_Rep_3 1 473.2381591796875 2 473.238119 944.461684 NaN NaN NaN NaN NaN NaN NaN 93.25 1 93.25 92.75 93.75 0 0 0 0 0.40604 1 22594 22594 2.5775 0 1 + 11332 21658 7007 7013 14135 14135 -0.012768154940886234 GWFVQLPP 8 Unmodified _GWFVQLPP_ 0 0 0 REV__ENST00000451156.1_1_8:116680102-116680291:-|nuORF REV__ENST00000451156.1_1_8:116680102-116680291:-|nuORF MSMS UPN48_class_I_Rep_3 7 472.28765869140625 2 472.255446 942.496338 NaN NaN NaN NaN NaN NaN NaN 88.203 1 92.013 91.513 92.513 3.8104 0 0 0 0.40746 1 20936 20936 0.69038 0 1 + 11333 22388 7008 7014 14136 14136 0.022790075940065435 GWFVVIYN 8 Unmodified _GWFVVIYN_ 0 0 0 REV__L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|17|2|sense REV__L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 499.26055908203125 2 499.260728 996.506903 NaN NaN NaN NaN NaN NaN NaN 27.757 1 31.523 31.023 32.023 3.7662 0 0 0 0.40746 1 4177 4177 0.69038 0 1 + 11334 28681 7009 7015 14137 14137 0.008509902484206577 GWFVVIYN 8 Unmodified _GWFVVIYN_ 0 0 0 REV__L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|17|2|sense REV__L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 499.2596740722656 2 499.260728 996.506903 NaN NaN NaN NaN NaN NaN NaN 22.538 1 26.289 25.789 26.789 3.7507 0 0 0 0.40738 1 2315 2315 0.79363 0 1 + 11335 28681 7009 7015 14138 14138 0.008509902484206577 GWFYWPPR 8 Unmodified _GWFYWPPR_ 0 0 0 REV__ENST00000370382.7_2_1:92546069-92546234:+|nuORF REV__ENST00000370382.7_2_1:92546069-92546234:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.6862182617188 2 554.771794 1107.52904 NaN NaN NaN NaN NaN NaN NaN 114.37 1 118.03 117.53 118.53 3.6629 0 0 0 0.40738 1 27336 27336 0.79363 0 1 + 11336 21954 7010 7016 14139 14139 -0.02042785283174453 GWGLRKEV 8 Unmodified _GWGLRKEV_ 0 0 0 ENST00000333039.2_2_22:39215633-39216080:-|nuORF ENST00000333039.2_2_22:39215633-39216080:-|nuORF ENST00000333039.2_2_22:39215633-39216080:-|nuORF MSMS UPN48_class_I_Rep_2 6 472.75775146484375 2 472.769252 943.52395 NaN NaN NaN NaN NaN NaN NaN 49.462 1 53.159 52.659 53.659 3.6972 0 0 0 0.4044 1 9996 9996 4.756 0 1 11337 6195 7011 7017 14140 14140 0.04992910854230104 GWGQAGGRRW 10 Unmodified _GWGQAGGRRW_ 0 0 0 REV__HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|29|2|sense REV__HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 565.7821044921875 2 565.783756 1129.55296 NaN NaN NaN NaN NaN NaN NaN 21.106 1 24.652 24.152 25.152 3.5454 0 0 0 0.53105 1 1879 1879 1.4819 0 1 + 11338 23741 7012 7018 14141 14141 -0.006635517967879423 GWHPATVCKI 10 Unmodified _GWHPATVCKI_ 0 0 0 nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2;nc|ENSG00000166949|P84022-4|SMAD3;nc|ENSG00000166949|P84022-3|SMAD3;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3 nc|ENSG00000175387|Q15796-2|SMAD2 nc|ENSG00000175387|Q15796-2|SMAD2 MSMS UPN47_class_I_Rep_3 4 556.2891845703125 2 556.289494 1110.56443 NaN NaN NaN NaN NaN NaN NaN 63.529 1 66.699 66.199 67.199 3.1698 0 0 0 0.53105 1 15133 15133 3.2813 0.39209 1 11339 4721 7013 7019 14142 14142 0.013575091823440744 GWIFFLTF 8 Unmodified _GWIFFLTF_ 0 0 0 L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|59|3|anti-sense L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|59|3|anti-sense L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|59|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.7734985351562 2 515.773471 1029.53239 0.26224 0.00013526 -0.5582 -0.00028791 -0.29596 -0.00015265 515.7731686824133 57.528 0.7733 60.965 60.616 61.389 3.437 85 62 2 0 0 0 0.82752 1 13282 13282 5.2307 2.3415 1 168310 11340 10315 7014 7020 14143 14143 0.018804647708293487 GWIIAAPLA 9 Unmodified _GWIIAAPLA_ 0 0 0 REV__ENST00000520289.1_1_8:117661133-117668119:-|nuORF REV__ENST00000520289.1_1_8:117661133-117668119:-|nuORF MSMS UPN47_class_I_Rep_1 2 456.269287109375 2 456.271096 910.527639 NaN NaN NaN NaN NaN NaN NaN 45.359 1 49.059 48.559 49.559 3.6999 0 0 0 0.381 1 9519 9519 5.2307 0 1 + 11341 22781 7015 7021 14144 14144 0.06879580628071835 GWKGCGMSTSY 11 Unmodified _GWKGCGMSTSY_ 0 0 0 REV__MLT2D_dup3055|chr10:63252236-63252677:+|1.4692053285564712|0.0147848502415123|6.63|151.0|22|2|anti-sense REV__MLT2D_dup3055|chr10:63252236-63252677:+|1.4692053285564712|0.0147848502415123|6.63|151.0|22|2|anti-sense MSMS UPN47_class_I_Rep_1 2 588.7444458007812 2 588.744259 1175.47396 NaN NaN NaN NaN NaN NaN NaN 37.361 1 41.027 40.527 41.527 3.6652 0 0 0 0.38417 1 7080 7080 1.3295 0.5359 1 + 11342 31837 7016 7022 14145 14145 -0.10675327928220213 GWLAFARH 8 Unmodified _GWLAFARH_ 0 0 0 REV__HERV9-int_dup329|chr19:5159634-5165376:-|4.886098675625007|0.1196380582796974|5.35|151.0|199|1|anti-sense REV__HERV9-int_dup329|chr19:5159634-5165376:-|4.886098675625007|0.1196380582796974|5.35|151.0|199|1|anti-sense MSMS UPN48_class_I_Rep_1 5 479.2579345703125 2 479.256311 956.49807 NaN NaN NaN NaN NaN NaN NaN 112.98 1 116.62 116.12 117.12 3.6314 0 0 0 0.40738 1 27435 27435 0.79363 0 1 + 11343 23612 7017 7023 14146 14146 0.018080614026075637 GWLYLDYK 8 Unmodified _GWLYLDYK_ 0 0 0 REV__L1M4a2_dup500|chr4:128967943-128969141:-|1.7958847872415291|0.039765327307609|5.5|151.0|21|2|sense REV__L1M4a2_dup500|chr4:128967943-128969141:-|1.7958847872415291|0.039765327307609|5.5|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 529.2710571289062 2 529.271293 1056.52803 NaN NaN NaN NaN NaN NaN NaN 119.33 1 122.74 122.24 123.24 3.4157 0 0 0 0.40738 1 29464 29464 0.79363 0 1 + 11344 24519 7018 7024 14147 14147 0.002029555572789832 GWNYFFFIY 9 Unmodified _GWNYFFFIY_ 0 0 0 L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|241|2|anti-sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|241|2|anti-sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|241|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 629.2948608398438 2 628.792392 1255.57023 0.33393 0.00020997 1.2945 0.00081398 1.6285 0.001024 629.294834933374 47.06 0.61854 50.304 49.992 50.611 3.2439 59 38 2 0 0 0 0.46434 1 10099 10099 4.3292 0 1 112970 11345 13986 7019 7025 14148 14148 -0.04733069034341497 GWPDAQFQ 8 Unmodified _GWPDAQFQ_ 0 0 0 nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2 nc|ENSG00000101251|Q5TEA6-2|SEL1L2 nc|ENSG00000101251|Q5TEA6-2|SEL1L2 MULTI-MSMS UPN46_class_I_Rep_3 1 474.7143249511719 2 474.714142 947.413731 0.24803 0.00011774 0.92024 0.00043685 1.1683 0.00055459 474.71445914270987 84.242 0.37481 84.242 84.159 84.534 0 39 33 2 0 0 0 0.82752 1 20050 20050 2.5775 1.7838 1 119000 11346 1560 7020 7026 14149 14149 -0.062079342048150465 GWPGHPTVWL 10 Unmodified _GWPGHPTVWL_ 0 0 0 MER21C_dup5031|chr19:19716981-19717734:-|1.0133429500930422|0.0472326150765876|4.42|151.0|15|2|sense MER21C_dup5031|chr19:19716981-19717734:-|1.0133429500930422|0.0472326150765876|4.42|151.0|15|2|sense MER21C_dup5031|chr19:19716981-19717734:-|1.0133429500930422|0.0472326150765876|4.42|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 575.2960815429688 2 575.295633 1148.57671 NaN NaN NaN NaN NaN NaN NaN 109.74 1 109.74 109.24 110.24 0 0 0 0 0.53105 1 26983 26983 4.3292 0 1 11347 15907 7021 7027 14150 14150 0.008368689170083599 GWQKVNTSR 9 Unmodified _GWQKVNTSR_ 0 0 0 L1MC5_dup10511|chr12:11865270-11865508:-|1.1754778221079287|0.012934800030919|6.51|151.0|8|2|sense L1MC5_dup10511|chr12:11865270-11865508:-|1.1754778221079287|0.012934800030919|6.51|151.0|8|2|sense L1MC5_dup10511|chr12:11865270-11865508:-|1.1754778221079287|0.012934800030919|6.51|151.0|8|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 538.1618041992188 2 538.285797 1074.55704 -0.24924 -0.00013416 -0.39036 -0.00021013 -0.6396 -0.00034429 538.2856390082103 13.222 0.17689 13.222 13.163 13.34 0 27 18 2 0 0 0 0.12157 1 341 341 6.2058 0.9089 1 59450 11348 11651 7022 7028 14151 14151 0.022744929062810115 GWQWRRREVQW 11 Unmodified _GWQWRRREVQW_ 0 0 0 REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF MSMS UPN48_class_I_Rep_3 7 529.6063232421875 3 529.607764 1585.80146 NaN NaN NaN NaN NaN NaN NaN 33.026 1 36.716 36.216 37.216 3.6896 0 0 0 0.38417 1 5082 5082 0.50596 0.41111 1 + 11349 22722 7023 7029 14152 14152 0.03199371720052113 GWRFGPSWS 9 Unmodified _GWRFGPSWS_ 0 0 0 nc|ENSG00000158525|Q8WXQ8-3|CPA5 nc|ENSG00000158525|Q8WXQ8-3|CPA5 nc|ENSG00000158525|Q8WXQ8-3|CPA5 MSMS UPN46_class_I_Rep_3 1 539.7930297851562 2 540.256508 1078.49846 NaN NaN NaN NaN NaN NaN NaN 77.216 1 77.216 76.716 77.716 0 0 0 0 0.39518 1 18041 18041 1.8442 0 1 11350 16722 7024 7030 14153 14153 -0.03764563668187293 GWSGRRKG 8 Unmodified _GWSGRRKG_ 0 0 0 REV__ENST00000444677.5_2_9:129986769-129986913:+|nuORF REV__ENST00000444677.5_2_9:129986769-129986913:+|nuORF MSMS UPN46_class_I_Rep_3 1 452.26910400390625 2 452.249018 902.483482 NaN NaN NaN NaN NaN NaN NaN 43.159 1 43.159 42.659 43.659 0 0 0 0 0.40738 1 8593 8593 0.79363 0 1 + 11351 22351 7025 7031 14154 14154 0.02833989254475 GWSHNQPASY 10 Unmodified _GWSHNQPASY_ 0 0 0 REV__ENST00000496230.5_1_1:155254296-155257077:+|nuORF REV__ENST00000496230.5_1_1:155254296-155257077:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 573.7515869140625 2 573.751787 1145.48902 -0.11142 -6.3925E-05 -0.79946 -0.00045869 -0.91088 -0.00052262 573.7512963414551 22.089 0.66816 25.764 25.424 26.092 3.6749 104 63 2 0 0 0 0.56118 1 2431 2431 2.9952 0.93549 1 97020 + 11352 22660 7026 7032 14155 14155 -0.07790376744378591 GWSHSCHAML 10 Unmodified _GWSHSCHAML_ 0 0 0 ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 MSMS UPN48_class_I_Rep_3 7 564.7415161132812 2 564.739311 1127.46407 NaN NaN NaN NaN NaN NaN NaN 113 1 116.65 116.15 117.15 3.6568 0 0 0 0.53105 1 26859 26859 1.4819 0.79152 1 11353 4353 7027 7033 14156 14156 -0.09456471142971168 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_1 2 472.7289733886719 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.921 1 95.626 95.126 96.126 3.7053 0 0 0 0.40625 1 22923 22923 2.3027 0.24298 1 11354 13805 7028 7034 14157 14157 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_1 2 472.72955322265625 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 98.709 1 102.5 102 103 3.7926 0 0 0 0.40404 1 24432 24432 5.2307 0 1 11355 13805 7028 7034 14158 14158 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_1 5 472.7286682128906 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.98 1 95.606 95.106 96.106 3.626 0 0 0 0.39624 1 22110 22110 9.3474 4.1168 1 11356 13805 7028 7034 14159 14159 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_1 5 472.7279968261719 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 92.237 1 95.863 95.363 96.363 3.626 0 0 0 0.39624 1 22167 22167 9.3474 5.403 1 11357 13805 7028 7034 14160 14160 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_2 6 472.72802734375 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 92.072 1 95.835 95.335 96.335 3.7629 0 0 0 0.39624 1 21918 21918 9.3474 5.0182 1 11358 13805 7028 7034 14161 14161 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_2 6 472.7283630371094 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 92.245 1 96.008 95.508 96.508 3.7629 0 0 0 0.39624 1 21958 21958 9.3474 4.5914 1 11359 13805 7028 7034 14162 14162 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.7288818359375 2 472.729261 943.443968 0.2169 0.00010254 -0.47324 -0.00022372 -0.25634 -0.00012118 472.7286947881166 91.836 0.074036 95.699 95.659 95.733 3.8634 13 10 2 0 0 0 0.82752 1 21779 21779 9.3474 4.1168 1 119530 11360 13805 7028 7034 14163 14163 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.7283935546875 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.969 1 95.832 95.332 96.332 3.8634 0 0 0 0.39624 1 21812 21812 9.3474 1.4373 1 11361 13805 7028 7034 14164 14164 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.7273864746094 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 92.105 1 95.983 95.483 96.483 3.8782 0 0 0 0.39624 1 21842 21842 9.3474 5.0182 1 11362 13805 7028 7034 14165 14165 -0.030015755396107124 GWTSFSFI 8 Unmodified _GWTSFSFI_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.72869873046875 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 92.138 1 96.017 95.517 96.517 3.8782 0 0 0 0.39624 1 21851 21851 9.3474 4.5914 1 11363 13805 7028 7034 14166 14166 -0.030015755396107124 GWWIDHDR 8 Unmodified _GWWIDHDR_ 0 0 0 REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|250|2|anti-sense REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|250|2|anti-sense MSMS UPN47_class_I_Rep_2 3 542.7520751953125 2 542.75159 1083.48863 NaN NaN NaN NaN NaN NaN NaN 27.118 1 30.616 30.116 31.116 3.4986 0 0 0 0.40404 1 4023 4023 5.2307 0 1 + 11364 23913 7029 7035 14167 14167 -0.04977751673595776 GWYFISIEK 9 Unmodified _GWYFISIEK_ 0 0 0 REV__ENST00000275034.4_1_6:79735241-79735325:-|nuORF REV__ENST00000275034.4_1_6:79735241-79735325:-|nuORF MSMS UPN48_class_I_Rep_1 5 571.7990112304688 2 571.797675 1141.5808 NaN NaN NaN NaN NaN NaN NaN 29.914 1 33.456 32.956 33.956 3.542 0 0 0 0.39518 1 4227 4227 1.8442 0.19162 1 + 11365 21614 7030 7036 14168 14168 0.0156691362010406 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS UPN48_class_I_Rep_1 5 496.2764587402344 2 496.276575 990.538597 0.18973 9.4157E-05 -0.24165 -0.00011992 -0.05192 -2.5767E-05 496.27635082130377 85.836 0.46658 89.442 89.045 89.512 3.6059 143 49 4 0 0 0 0.0060693 2 20502 20502;20538 103.35 40.781 1 2397200 11366 2881 7031 7037 14169;14170 14169 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS UPN48_class_I_Rep_1 5 496.27642822265625 2 496.276575 990.538597 0.18909 9.384E-05 -0.15781 -7.8318E-05 0.031278 1.5523E-05 496.27637579644386 85.961 0.53983 89.574 89.512 90.051 3.613 159 64 4 0 0 0 0.0051925 4 20577 20577;20610;20642;20678 114.65 49.414 1 1961200 11367 2881 7031 7037 14171;14172;14173;14174 14171 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS UPN48_class_I_Rep_3 7 496.27655029296875 2 496.276575 990.538597 0.27496 0.00013646 -0.23009 -0.00011419 0.044867 2.2266E-05 496.2763522966064 85.757 0.91209 89.527 89.19 90.102 3.7701 205 108 4 0 0 0 0.0051925 3 20337 20337;20374;20406 103.35 38.821 1 2011100 11368 2881 7031 7037 14175;14176;14177 14175 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MSMS UPN48_class_I_Rep_3 7 496.2765808105469 2 496.276575 990.538597 NaN NaN NaN NaN NaN NaN NaN 85.598 1 89.368 88.868 89.868 3.7701 0 0 0 6.3439E-12 1 20301 20301 82.529 34.781 1 11369 2881 7031 7037 14178 14178 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 496.276575 990.538597 0.27835 0.00013814 -0.25519 -0.00012665 0.023154 1.1491E-05 496.27634659213777 85.842 0.72055 89.548 89.052 89.773 3.7058 -0.0019279 -2.5229E-05 NaN 114.65 220 81 4 NaN NaN NaN NaN 0 NaN NaN 0 2737100 11370 2881 7031 7037 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 496.276575 990.538597 0.2783 0.00013811 -0.12986 -6.4447E-05 0.14844 7.3665E-05 496.276398151872 86.126 0.32592 89.832 89.765 90.091 3.7058 0.19515 8.6317E-05 NaN 103.35 81 41 3 NaN NaN NaN NaN 0 NaN NaN 0 614120 11371 2881 7031 7037 0.04294938211717181 GYADTLKGY 9 Unmodified _GYADTLKGY_ 0 0 0 REV__ENSG00000078269|ENST00000355585|SYNJ2 REV__ENSG00000078269|ENST00000355585|SYNJ2 MULTI-MSMS UPN47_class_I_Rep_1 2 494.2426452636719 2 494.242732 986.470912 -0.23296 -0.00011514 -0.3505 -0.00017323 -0.58346 -0.00028837 494.24245564370386 41.265 0.49586 44.937 44.747 45.243 3.6719 59 35 2 0 0 0 0.35081 2 8254 8254;8267 10.824 0 1 82924 + 11372 17885 7032 7038 14179;14180 14179 -0.02286511719103146 GYADTLKGY 9 Unmodified _GYADTLKGY_ 0 0 0 REV__ENSG00000078269|ENST00000355585|SYNJ2 REV__ENSG00000078269|ENST00000355585|SYNJ2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 494.242732 986.470912 -0.12223 -6.0413E-05 0.21607 0.00010679 0.093841 4.638E-05 494.2426924709302 41.583 0.49314 44.948 44.752 45.245 3.3655 0.005635 0.00030682 NaN 10.824 48 37 2 NaN NaN NaN NaN 0 NaN NaN 0 46838 + 11373 17885 7032 7038 -0.02286511719103146 GYASGHAFV 9 Unmodified _GYASGHAFV_ 0 0 0 REV__L1M3a_dup418|chr19:19803012-19803791:+|3.390394395452038|0.3699492466351832|3.2|151.0|35|2|anti-sense REV__L1M3a_dup418|chr19:19803012-19803791:+|3.390394395452038|0.3699492466351832|3.2|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_2 6 454.717041015625 2 454.716685 907.418816 NaN NaN NaN NaN NaN NaN NaN 81.416 1 85.073 84.573 85.573 3.6567 0 0 0 0.39518 1 19326 19326 1.8442 1.0506 1 + 11374 24313 7033 7039 14181 14181 -0.038596303421968514 GYASRFIVI 9 Unmodified _GYASRFIVI_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MULTI-MSMS UPN48_class_I_Rep_1 5 513.2926635742188 2 513.292559 1024.57057 0.38768 0.00019899 0.047732 2.45E-05 0.43541 0.0002235 513.2924359345736 62.243 0.73526 65.706 65.348 66.083 3.4625 140 56 3 0 0 0 0.12096 2 13915 13915;13955 29.841 11.694 1 619020 11375 3648 7034 7040 14182;14183 14182 0.05926350685513171 GYASRFIVI 9 Unmodified _GYASRFIVI_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MULTI-MSMS UPN48_class_I_Rep_2 6 513.2926025390625 2 513.292559 1024.57057 0.38283 0.0001965 0.0020157 1.0346E-06 0.38484 0.00019754 513.2923740952936 62.23 0.77628 65.704 65.275 66.052 3.4738 132 59 3 0 0 0 0.16799 3 13821 13821;13859;13896 23.79 8.5413 1 423680 11376 3648 7034 7040 14184;14185;14186 14184 0.05926350685513171 GYASRFIVI 9 Unmodified _GYASRFIVI_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MULTI-MSMS UPN48_class_I_Rep_3 7 513.2926635742188 2 513.292559 1024.57057 0.32373 0.00016617 0.073414 3.7683E-05 0.39714 0.00020385 513.2924203865554 61.977 0.82293 65.488 65.123 65.946 3.5104 163 74 3 0 0 0 0.088679 4 13732 13692;13732;13771;13811 36.506 14.76 1 335930 11377 3648 7034 7040 14187;14188;14189;14190 14188 0.05926350685513171 GYCYHLWQK 9 Unmodified _GYCYHLWQK_ 0 0 0 HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|192|1|anti-sense HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|192|1|anti-sense HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|192|1|anti-sense MSMS UPN47_class_I_Rep_1 2 598.8596801757812 2 599.279126 1196.5437 NaN NaN NaN NaN NaN NaN NaN 52.6 1 56.158 55.658 56.658 3.5585 0 0 0 0.39326 1 11717 11717 2.3027 0.65011 1 11378 8359 7035 7041 14191 14191 -0.04671081197352578 GYEVKGTLT 9 Unmodified _GYEVKGTLT_ 0 0 0 L1MA8_dup333|chr1:147300434-147303090:+|1.4439430619558666|0.0227604278159588|5.99|151.0|21|1|sense L1MA8_dup333|chr1:147300434-147303090:+|1.4439430619558666|0.0227604278159588|5.99|151.0|21|1|sense L1MA8_dup333|chr1:147300434-147303090:+|1.4439430619558666|0.0227604278159588|5.99|151.0|21|1|sense MSMS UPN47_class_I_Rep_3 4 484.2583312988281 2 484.258382 966.502212 NaN NaN NaN NaN NaN NaN NaN 19.583 1 22.934 22.434 23.434 3.3514 0 0 0 0.39598 1 1857 1857 1.6526 0 1 11379 10050 7036 7042 14192 14192 0.017620613150143072 GYFETPFSF 9 Unmodified _GYFETPFSF_ 0 0 0 ENSG00000125386.16,FAM193A,chr4,+,I8.1,2646833,2654420|84|9.03|2|intron;ENSG00000125386|ENST00000637812|FAM193A ENSG00000125386.16,FAM193A,chr4,+,I8.1,2646833,2654420|84|9.03|2|intron ENSG00000125386.16,FAM193A,chr4,+,I8.1,2646833,2654420|84|9.03|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 547.745361328125 2 547.745108 1093.47566 0.46073 0.00025237 0.089323 4.8926E-05 0.55006 0.00030129 547.7452094983532 87.805 0.4101 91.423 91.188 91.598 3.6187 54 41 2 0 0 0 0.082592 3 21045 21010;21045;21084 37.974 20.861 1 150610 11380 2502 7037 7043 14193;14194;14195 14194 -0.06733627576318213 GYFIYYYH 8 Unmodified _GYFIYYYH_ 0 0 0 REV__Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|2|1|sense REV__Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 563.2555541992188 2 563.255643 1124.49673 NaN NaN NaN NaN NaN NaN NaN 35.084 1 38.51 38.01 39.01 3.4253 0 0 0 0.40738 1 6424 6424 0.79363 0 1 + 11381 32524 7038 7044 14196 14196 -0.06053617476823092 GYFSEFPF 8 Unmodified _GYFSEFPF_ 0 0 0 REV__L1ME4a_dup4067|chr2:101286529-101286691:+|1.418010625626288|0.4912964581705996|1.53|151.0|12|3|anti-sense REV__L1ME4a_dup4067|chr2:101286529-101286691:+|1.418010625626288|0.4912964581705996|1.53|151.0|12|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 497.74517822265625 2 497.221268 992.427984 0.21466 0.00010673 0.079132 3.9346E-05 0.29379 0.00014608 497.22127890203734 37.596 0.070305 37.596 37.555 37.625 0 6 4 2 0 0 0 0.72333 1 7082 7082 0.79363 0 1 71787 + 11382 28236 7039 7045 14197 14197 -0.06853281776511722 GYFWFIKK 8 Unmodified _GYFWFIKK_ 0 0 0 REV__ENST00000504666.5_1_5:138443812-138443896:-|nuORF REV__ENST00000504666.5_1_5:138443812-138443896:-|nuORF MSMS UPN47_class_I_Rep_1 2 544.7588500976562 2 544.80002 1087.58549 NaN NaN NaN NaN NaN NaN NaN 20.758 1 24.402 23.902 24.902 3.6436 0 0 0 0.40604 1 2141 2141 2.5775 0.51773 1 + 11383 22702 7040 7046 14198 14198 0.04519842553509079 GYHEACKYY 9 Unmodified _GYHEACKYY_ 0 0 0 L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|148|2|anti-sense;L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|231|1|anti-sense;L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|80|1|anti-sense;L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|224|2|anti-sense;L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|243|2|anti-sense;L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|96|1|anti-sense;L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|132|1|anti-sense;L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|216|2|anti-sense;L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|238|2|anti-sense;L1M1_dup845|chr2:63997145-63998957:-|2.7238604180124977|0.0570017467479234|5.58|151.0|100|2|anti-sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|148|2|anti-sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|148|2|anti-sense MSMS UPN47_class_I_Rep_1 2 567.2400512695312 2 567.239667 1132.46478 NaN NaN NaN NaN NaN NaN NaN 25.405 1 29.154 28.654 29.654 3.7495 0 0 0 0.39428 1 3478 3478 2.0598 0 1 11384 8520 7041 7047 14199 14199 -0.09615353222261547 GYHLSLPLKS 10 Unmodified _GYHLSLPLKS_ 0 0 0 REV__MER1A_dup2124|chr11:16741557-16742027:+|2.1958219189378445|0.4434884890112507|2.31|151.0|14|3|sense REV__MER1A_dup2124|chr11:16741557-16742027:+|2.1958219189378445|0.4434884890112507|2.31|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 557.8150024414062 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 30.502 1 34.044 33.544 34.544 3.542 0 0 0 0.53105 1 4386 4386 1.6526 0.32309 1 + 11385 31119 7042 7048 14200 14200 0.06598004885699993 GYIDGSLEL 9 Unmodified _GYIDGSLEL_ 0 0 0 REV__MER20_dup16378|chr22:17752224-17752320:+|1.10112589673502|0.023235648918135|5.57|151.0|1|1|sense REV__MER20_dup16378|chr22:17752224-17752320:+|1.10112589673502|0.023235648918135|5.57|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.7425537109375 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.28552 1 9957 9957 14.838 0 1 1297200 + 11386 31155 7043 7049 14201 14201 -0.01353931438939071 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS UPN48_class_I_Rep_1 5 544.8085327148438 2 544.808574 1087.60259 0.44749 0.0002438 -0.10353 -5.6405E-05 0.34396 0.00018739 544.8084267932232 53.045 0.73049 56.564 56.172 56.903 3.5192 112 52 3 0 0 0 0.048662 3 11095 11056;11095;11136 49.554 26.818 1 316460 11387 4106 7044 7050 14202;14203;14204 14203 0.062297183686723656 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS UPN48_class_I_Rep_2 6 544.8084716796875 2 544.808574 1087.60259 0.53719 0.00029267 -0.24988 -0.00013614 0.28732 0.00015653 544.808514740177 52.844 0.68888 56.454 56.215 56.904 3.6098 114 42 4 0 0 0 0.05757 3 11052 11009;11052;11090 45.74 27.594 1 295300 11388 4106 7044 7050 14205;14206;14207 14206 0.062297183686723656 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS UPN48_class_I_Rep_3 7 544.8088989257812 2 544.808574 1087.60259 0.34667 0.00018887 0.16339 8.9015E-05 0.51006 0.00027788 544.8085315267701 53.031 0.68584 56.614 56.171 56.857 3.5836 95 41 3 0 0 0 0.028995 2 11003 10957;11003 57.722 32.323 1 473090 11389 4106 7044 7050 14208;14209 14209 0.062297183686723656 GYIHVTQTF 9 Unmodified _GYIHVTQTF_ 0 0 0 ENSG00000105374|ENST00000221978|NKG7 ENSG00000105374|ENST00000221978|NKG7 ENSG00000105374|ENST00000221978|NKG7 MULTI-MSMS UPN48_class_I_Rep_1 5 533.2718505859375 2 533.271824 1064.5291 0.32915 0.00017553 -0.036459 -1.9443E-05 0.2927 0.00015609 533.271649038645 49.277 0.74079 52.801 52.494 53.235 3.5243 122 52 3 0 0 0 0.0060693 3 9961 9918;9961;10048 82.529 44.555 1 402520 11390 1733 7045 7051 14210;14211;14212 14211 -0.0005883007381726202 GYIHVTQTF 9 Unmodified _GYIHVTQTF_ 0 0 0 ENSG00000105374|ENST00000221978|NKG7 ENSG00000105374|ENST00000221978|NKG7 ENSG00000105374|ENST00000221978|NKG7 MULTI-MSMS UPN48_class_I_Rep_2 6 533.2716674804688 2 533.271824 1064.5291 0.36748 0.00019596 0.098842 5.2709E-05 0.46632 0.00024867 533.2716713136642 49.076 0.72892 52.793 52.496 53.225 3.7175 111 47 3 0 0 0 0.006343 3 9859 9814;9859;9898 88.954 42.933 1 332740 11391 1733 7045 7051 14213;14214;14215 14214 -0.0005883007381726202 GYIHVTQTF 9 Unmodified _GYIHVTQTF_ 0 0 0 ENSG00000105374|ENST00000221978|NKG7 ENSG00000105374|ENST00000221978|NKG7 ENSG00000105374|ENST00000221978|NKG7 MULTI-MSMS UPN48_class_I_Rep_3 7 533.2721557617188 2 533.271824 1064.5291 0.42887 0.0002287 0.021589 1.1513E-05 0.45046 0.00024022 533.2716193298145 49.191 0.69772 52.82 52.55 53.248 3.6291 121 50 3 0 0 0 0.019142 4 9845 9803;9845;9891;9916 63.961 33.324 1 472870 11392 1733 7045 7051 14216;14217;14218;14219 14217 -0.0005883007381726202 GYKLGFFY 8 Unmodified _GYKLGFFY_ 0 0 0 REV__L1MA4A_dup1019|chr3:31650807-31651388:+|1.0674581205829996|0.1870412369558717|2.51|151.0|31|2|anti-sense REV__L1MA4A_dup1019|chr3:31650807-31651388:+|1.0674581205829996|0.1870412369558717|2.51|151.0|31|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 497.2550048828125 2 497.755278 993.496004 0.25251 0.00012569 -0.11722 -5.8349E-05 0.13529 6.734E-05 497.7555557212393 67.269 0.091248 67.269 67.219 67.311 0 12 9 2 0 0 0 0.72333 1 15314 15314 0.69038 0 1 330070 + 11393 25232 7046 7052 14220 14220 -0.0010041212585747417 GYKVEFTAPV 10 Unmodified _GYKVEFTAPV_ 0 0 0 REV__AluJb_dup94836|chr14:102599120-102599431:-|1.4915878681700745|0.0045175293209047|8.37|151.0|1|1|sense REV__AluJb_dup94836|chr14:102599120-102599431:-|1.4915878681700745|0.0045175293209047|8.37|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 555.794189453125 2 555.795132 1109.57571 NaN NaN NaN NaN NaN NaN NaN 58.066 1 61.234 60.734 61.734 3.1681 0 0 0 0.53105 1 13464 13464 13.042 0.80181 1 + 11394 16975 7047 7053 14221 14221 0.0253060975749122 GYLADPAKF 9 Unmodified _GYLADPAKF_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-SECPEP UPN48_class_I_Rep_3 7 491.7956237792969 2 491.255643 980.496732 0.1402 6.8876E-05 -0.17589 -8.6407E-05 -0.035687 -1.7531E-05 491.2556490772944 49.744 0.27861 53.365 53.239 53.518 3.621 23 15 2 0 0 0 0.099161 1 10000 10000 20.415 11.821 1 49806 11395 3031 7048 7054 14222 14222 0.005703825231876181 GYLPLITEES 10 Unmodified _GYLPLITEES_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|68|1|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|68|1|anti-sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_3 7 561.3032836914062 2 561.289879 1120.56521 NaN NaN NaN NaN NaN NaN NaN 65.504 1 69.012 68.512 69.512 3.5077 0 0 0 0.53105 1 14808 14808 7.2892 0.56607 1 11396 12093 7049 7055 14223 14223 0.009745823123921582 GYLSSVLISF 10 Unmodified _GYLSSVLISF_ 0 0 0 L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|64|1|anti-sense L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|64|1|anti-sense L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_1 5 543.2964477539062 2 543.297507 1084.58046 NaN NaN NaN NaN NaN NaN NaN 66.779 1 70.231 69.731 70.731 3.4516 0 0 0 0.53105 1 15296 15296 20.415 2.0414 1 11397 9832 7050 7056 14224 14224 0.04155493900225338 GYLTEAEKF 9 Unmodified _GYLTEAEKF_ 0 0 0 ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron;nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|2|intron;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1 ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron MULTI-MSMS UPN48_class_I_Rep_3 7 529.2637329101562 2 529.263665 1056.51278 0.38246 0.00020242 -0.013595 -7.1954E-06 0.36886 0.00019522 529.2636054664816 49.489 0.52964 53.119 52.894 53.424 3.6291 65 35 2 0 0 0 0.038999 1 9934 9934 53.404 28.005 1 150950 11398 3355 7051 7057 14225 14225 -0.013219560305742561 GYLTEAEKF 9 Unmodified _GYLTEAEKF_ 0 0 0 ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron;nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|2|intron;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1 ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron MULTI-MATCH UPN48_class_I_Rep_1 5 2 529.263665 1056.51278 0.31252 0.0001654 -0.073826 -3.9073E-05 0.23869 0.00012633 529.2635867659825 49.595 0.55316 53.119 52.858 53.411 3.5246 0.010589 -0.00012925 NaN 53.404 66 32 3 NaN NaN NaN NaN 0 NaN NaN 0 157960 11399 3355 7051 7057 -0.013219560305742561 GYLTEAEKF 9 Unmodified _GYLTEAEKF_ 0 0 0 ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron;nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|2|intron;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1 ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron ENSG00000144455.14,SUMF1,chr3,-,I7.1,4376390,4410864|31|7.44|5|intron MULTI-MATCH UPN48_class_I_Rep_2 6 2 529.263665 1056.51278 0.35521 0.000188 0.29796 0.0001577 0.65317 0.0003457 529.263727714833 49.371 0.66073 53.088 52.801 53.462 3.7175 -0.020491 0.0002643 NaN 53.404 74 44 2 NaN NaN NaN NaN 0 NaN NaN 0 144090 11400 3355 7051 7057 -0.013219560305742561 GYMEGYYTF 9 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ GYM(1)EGYYTF GYM(78)EGYYTF 0 0 1 nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF nc|ENSG00000110429|Q9UK99-3|FBXO3 nc|ENSG00000110429|Q9UK99-3|FBXO3 MULTI-MSMS UPN48_class_I_Rep_3 7 573.7261962890625 2 573.726058 1145.43756 0.45328 0.00026006 -0.025652 -1.4717E-05 0.42763 0.00024534 573.7260966212968 59.999 0.43999 63.516 63.322 63.762 3.5169 87 36 3 0 0 0 0.0055465 2 13181 13141;13181 78.149 44.047 1 158420 11401 1940 7052 7058 14226;14227 14227 59 -0.12933881553317406 GYMLTSQSVK 10 Unmodified _GYMLTSQSVK_ 0 0 0 HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|104|3|sense HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|104|3|sense HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|104|3|sense MSMS UPN47_class_I_Rep_2 3 557.2865600585938 2 557.284074 1112.5536 NaN NaN NaN NaN NaN NaN NaN 62.987 1 66.243 65.743 66.743 3.2558 0 0 0 0.53105 1 14913 14913 1.3295 0.5359 1 11402 8284 7053 7059 14228 14228 0.0018206201741577388 GYNFFCRYK 9 Unmodified _GYNFFCRYK_ 0 0 0 REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF MSMS UPN47_class_I_Rep_2 3 599.279296875 2 599.279126 1196.5437 NaN NaN NaN NaN NaN NaN NaN 43.304 1 46.662 46.162 47.162 3.358 0 0 0 0.39518 1 8919 8919 1.8442 0.19162 1 + 11403 22444 7054 7060 14229 14229 -0.046710811973298405 GYNSILRLY 9 Unmodified _GYNSILRLY_ 0 0 0 REV__ENSG00000180644|ENST00000441259|PRF1 REV__ENSG00000180644|ENST00000441259|PRF1 MULTI-MSMS UPN47_class_I_Rep_1 2 549.78271484375 2 549.800749 1097.58694 0.24729 0.00013596 -0.052282 -2.8745E-05 0.19501 0.00010721 549.8007443718254 49.127 0.48774 52.787 52.513 53 3.6592 53 35 2 0 0 0 0.28552 1 10721 10721 14.838 5.4551 1 83204 + 11404 20709 7055 7061 14230 14230 0.042054318516193234 GYNSILRLY 9 Unmodified _GYNSILRLY_ 0 0 0 REV__ENSG00000180644|ENST00000441259|PRF1 REV__ENSG00000180644|ENST00000441259|PRF1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 549.800749 1097.58694 0.41025 0.00022556 0.41229 0.00022668 0.82254 0.00045223 549.8012390906975 49.799 0.069035 53.142 53.121 53.19 3.3431 0.17784 0.00047606 NaN 14.838 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 28738 + 11405 20709 7055 7061 0.042054318516193234 GYNVLRLY 8 Unmodified _GYNVLRLY_ 0 0 0 L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|23|3|anti-sense L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|23|3|anti-sense L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|23|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 499.27685546875 2 499.276909 996.539266 -0.25454 -0.00012709 0.079202 3.9544E-05 -0.17534 -8.7542E-05 499.27691436676673 39.598 0.79811 42.836 42.476 43.274 3.238 75 55 2 0 0 0 0.72333 1 7849 7849 4.756 1.1595 1 83326 11406 13396 7056 7062 14231 14231 0.040857776514030775 GYPEVALHF 9 Unmodified _GYPEVALHF_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS UPN48_class_I_Rep_1 5 516.76123046875 2 516.761092 1031.50763 0.39365 0.00020342 -0.04659 -2.4076E-05 0.34706 0.00017935 516.7609930822789 62.889 0.90134 66.352 65.893 66.794 3.4625 134 61 3 0 0 0 0.0055873 5 14088 14045;14088;14134;14177;14221 77.984 59.849 1 653010 11407 2378 7057 7063 14232;14233;14234;14235;14236 14233 -0.006862151025416097 GYPEVALHF 9 Unmodified _GYPEVALHF_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS UPN48_class_I_Rep_2 6 516.7612915039062 2 516.761092 1031.50763 0.39733 0.00020533 -0.0090543 -4.6789E-06 0.38828 0.00020065 516.7610256970828 62.761 0.87865 66.235 65.829 66.708 3.4738 142 61 3 0 0 0 0.0064682 5 14034 13995;14034;14072;14114;14157 74.423 56.288 1 846480 11408 2378 7057 7063 14237;14238;14239;14240;14241 14238 -0.006862151025416097 GYPEVALHF 9 Unmodified _GYPEVALHF_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS UPN48_class_I_Rep_3 7 516.7612915039062 2 516.761092 1031.50763 0.36477 0.0001885 -0.018621 -9.6224E-06 0.34615 0.00017888 516.7609981482468 62.61 0.84508 66.12 65.751 66.596 3.5104 135 63 3 0 0 0 0.0064682 5 13926 13840;13880;13926;13972;14013 74.423 56.288 1 916770 11409 2378 7057 7063 14242;14243;14244;14245;14246 14244 -0.006862151025416097 GYPLWKVTF 9 Unmodified _GYPLWKVTF_ 0 0 0 ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP MULTI-MSMS UPN48_class_I_Rep_1 5 555.8029174804688 2 555.80276 1109.59097 0.52279 0.00029057 -0.10766 -5.9839E-05 0.41513 0.00023073 555.802627184526 71.858 0.75492 75.324 74.941 75.696 3.466 124 69 3 0 0 0 0.037922 3 16813 16776;16813;16855 53.833 37.986 1 466900 11410 5464 7058 7064 14247;14248;14249 14248 0.04055521345298985 GYPLWKVTF 9 Unmodified _GYPLWKVTF_ 0 0 0 ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP MULTI-MSMS UPN48_class_I_Rep_2 6 555.8028564453125 2 555.80276 1109.59097 0.48818 0.00027133 -0.31744 -0.00017644 0.17074 9.4898E-05 555.8025357311376 71.638 0.6542 75.189 74.839 75.493 3.5505 115 66 2 0 0 0 0.028995 2 16685 16685;16722 57.722 36.185 1 374290 11411 5464 7058 7064 14250;14251 14250 0.04055521345298985 GYPLWKVTF 9 Unmodified _GYPLWKVTF_ 0 0 0 ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP MULTI-MSMS UPN48_class_I_Rep_3 7 555.802978515625 2 555.80276 1109.59097 0.45588 0.00025338 -0.38919 -0.00021631 0.066695 3.7069E-05 555.8025483013444 71.567 0.55037 75.093 74.864 75.414 3.5266 78 49 3 0 0 0 0.12096 3 16646 16606;16646;16682 29.841 20.297 1 374300 11412 5464 7058 7064 14252;14253;14254 14253 0.04055521345298985 GYPSQYQLY 9 Unmodified _GYPSQYQLY_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS UPN48_class_I_Rep_1 5 559.7612915039062 2 559.761289 1117.50803 0.50861 0.0002847 -0.20514 -0.00011483 0.30346 0.00016987 559.7611329124518 68.478 0.71805 71.93 71.571 72.29 3.4517 164 64 3 0 0 0 0.082592 2 15817 15817;15855 37.974 25.399 1 627730 11413 3202 7059 7065 14255;14256 14255 -0.04602840173311051 GYPSQYQLY 9 Unmodified _GYPSQYQLY_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS UPN48_class_I_Rep_2 6 559.7616577148438 2 559.761289 1117.50803 0.50231 0.00028118 -0.12018 -6.7274E-05 0.38213 0.0002139 559.7611103647554 68.363 0.77209 71.871 71.478 72.25 3.5083 187 72 3 0 0 0 0.10817 5 15777 15673;15707;15743;15777;15813 32.305 25.399 1 590500 11414 3202 7059 7065 14257;14258;14259;14260;14261 14260 -0.04602840173311051 GYPSQYQLY 9 Unmodified _GYPSQYQLY_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS UPN48_class_I_Rep_3 7 559.761474609375 2 559.761289 1117.50803 0.47656 0.00026676 -0.21639 -0.00012113 0.26017 0.00014563 559.761108828131 68.316 0.81033 71.826 71.476 72.286 3.5093 189 71 3 0 0 0 0.10817 2 15648 15612;15648 32.305 32.305 1 605620 11415 3202 7059 7065 14262;14263 14263 -0.04602840173311051 GYPSQYQLY 9 Unmodified _GYPSQYQLY_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 559.761289 1117.50803 0.47656 0.00026676 -0.21639 -0.00012113 0.26017 0.00014563 559.761108828131 68.316 0.81033 71.826 71.476 72.286 3.5093 -0.049769 -3.9044E-05 NaN 37.974 189 71 3 NaN NaN NaN NaN 0 NaN NaN 0 605620 11416 3202 7059 7065 -0.04602840173311051 GYQFVQRVF 9 Unmodified _GYQFVQRVF_ 0 0 0 ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2 ENST00000568636.5_1_16:720997-722003:+|nuORF ENST00000568636.5_1_16:720997-722003:+|nuORF MSMS UPN48_class_I_Rep_3 7 572.2982788085938 2 572.300916 1142.58728 NaN NaN NaN NaN NaN NaN NaN 67.653 1 71.161 70.661 71.661 3.5077 0 0 0 0.35339 1 15460 15460 7.9102 1.187 1 11417 3197 7060 7066 14264 14264 0.021688515714913592 GYRIHRQGK 9 Unmodified _GYRIHRQGK_ 0 0 0 REV__nc|ENSG00000145990|Q9NXC2-3|GFOD1 REV__nc|ENSG00000145990|Q9NXC2-3|GFOD1 MSMS UPN48_class_I_Rep_3 7 557.8146362304688 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 90.239 1 94.086 93.586 94.586 3.847 0 0 0 0.39518 1 21424 21424 1.8442 0 1 + 11418 32005 7061 7067 14265 14265 0.06329594271414862 GYRPVPSQ 8 Unmodified _GYRPVPSQ_ 0 0 0 L1MD2_dup3379|chr5:180010660-180011095:+|4.347184387863554|0.1010247502962587|5.43|151.0|27|3|anti-sense L1MD2_dup3379|chr5:180010660-180011095:+|4.347184387863554|0.1010247502962587|5.43|151.0|27|3|anti-sense L1MD2_dup3379|chr5:180010660-180011095:+|4.347184387863554|0.1010247502962587|5.43|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 452.2386779785156 2 452.237784 902.461016 NaN NaN NaN NaN NaN NaN NaN 50.585 1 54.11 53.61 54.61 3.5246 0 0 0 0.40625 1 10346 10346 2.3027 0.24298 1 11419 11991 7062 7068 14266 14266 0.005883450661940515 GYRRYVPSI 9 Unmodified _GYRRYVPSI_ 0 0 0 L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|93|1|anti-sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|93|1|anti-sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|93|1|anti-sense MSMS UPN46_class_I_Rep_3 1 555.8041381835938 2 555.806365 1109.59818 NaN NaN NaN NaN NaN NaN NaN 31.075 1 31.075 30.575 31.575 0 0 0 0 0.39518 1 5145 5145 1.8442 0.36234 1 11420 9434 7063 7069 14267 14267 0.047762539457608 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR nc|ENSG00000100938|Q9P2T1-3|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 MULTI-MSMS UPN48_class_I_Rep_1 5 557.745849609375 2 557.745639 1113.47673 0.52528 0.00029297 -0.14732 -8.2165E-05 0.37797 0.00021081 557.7455531177743 55.159 1.655 58.668 58.184 59.839 3.5082 357 113 5 0 0 0 0.0028927 11 11711 11633;11673;11711;11753;11793;11833;11876;11924;11972;12016;12067 149.99 96.419 1 6057100 11421 1542 7064 7070 14268;14269;14270;14271;14272;14273;14274;14275;14276;14277;14278 14270 -0.07547413207407772 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR nc|ENSG00000100938|Q9P2T1-3|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 MULTI-MSMS UPN48_class_I_Rep_3 7 557.7457885742188 2 557.745639 1113.47673 0.28199 0.00015728 0.083539 4.6593E-05 0.36553 0.00020387 557.7456921287895 55.065 1.6248 58.634 58.147 59.771 3.5694 321 108 5 0 0 0 0.0059326 11 11565 11521;11565;11605;11645;11684;11725;11766;11811;11850;11889;11933 141.83 88.251 1 7652700 11422 1542 7064 7070 14279;14280;14281;14282;14283;14284;14285;14286;14287;14288;14289 14280 -0.07547413207407772 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR nc|ENSG00000100938|Q9P2T1-3|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 557.745639 1113.47673 0.61824 0.00034482 -0.19933 -0.00011117 0.41891 0.00023365 557.7455076803606 55.111 1.4581 58.667 58.165 59.623 3.5559 0.010626 -8.7656E-05 NaN 149.99 307 93 5 NaN NaN NaN NaN 0 NaN NaN 0 6364600 11423 1542 7064 7070 -0.07547413207407772 GYSHEYPY 8 Unmodified _GYSHEYPY_ 0 0 0 REV__nc|ENSG00000119787|Q8NHH9-3|ATL2 REV__nc|ENSG00000119787|Q8NHH9-3|ATL2 MSMS UPN48_class_I_Rep_2 6 508.2118225097656 2 508.211432 1014.40831 NaN NaN NaN NaN NaN NaN NaN 28.731 1 32.362 31.862 32.862 3.6311 0 0 0 0.40581 1 3990 3990 2.8892 0 1 + 11424 18688 7065 7071 14290 14290 -0.09831657787287895 GYSPEVFFFCC 11 Unmodified _GYSPEVFFFCC_ 0 0 0 L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|201|2|anti-sense L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|201|2|anti-sense L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|201|2|anti-sense MSMS UPN47_class_I_Rep_1 2 649.7616577148438 2 649.76466 1297.51477 NaN NaN NaN NaN NaN NaN NaN 57.86 1 61.297 60.797 61.797 3.437 0 0 0 0.38417 1 13317 13317 2.9952 1.151 1 11425 14943 7066 7072 14291 14291 -0.1220898660860712 GYSPQQLYY 9 Unmodified _GYSPQQLYY_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|52|3|sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.7608642578125 2 559.761289 1117.50803 0.50861 0.0002847 -0.20514 -0.00011483 0.30346 0.00016987 559.7611329124518 68.478 0.71805 71.93 71.571 72.29 3.4517 164 64 3 0 0 0 0.35081 2 15745 15738;15745 10.824 0.75 1 627730 + 11426 25503 7067 7073 14292;14293 14293 -0.04602840173333789 GYSPQQLYY 9 Unmodified _GYSPQQLYY_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|52|3|sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.7612915039062 2 559.761289 1117.50803 0.47656 0.00026676 -0.21639 -0.00012113 0.26017 0.00014563 559.761108828131 68.316 0.81033 71.826 71.476 72.286 3.5093 189 71 3 0 0 0 0.13631 1 15685 15685 26.884 1.4843 1 605620 + 11427 25503 7067 7073 14294 14294 -0.04602840173333789 GYSPYQLTW 9 Unmodified _GYSPYQLTW_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS UPN48_class_I_Rep_1 5 557.7636108398438 2 557.763832 1113.51311 0.50945 0.00028415 -0.80166 -0.00044713 -0.29221 -0.00016298 557.7632566578299 73.122 0.17523 76.603 76.571 76.746 3.4812 22 14 2 0 0 0 0.088679 1 17216 17216 36.506 12.486 1 110080 11428 1538 7068 7074 14295 14295 -0.03910536310718271 GYSPYQLTW 9 Unmodified _GYSPYQLTW_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS UPN48_class_I_Rep_3 7 557.76318359375 2 557.763832 1113.51311 0.46068 0.00025695 -0.6373 -0.00035546 -0.17662 -9.8511E-05 557.7633475780669 72.766 0.49248 76.303 76.17 76.662 3.5373 51 39 2 0 0 0 0.15547 1 17082 17082 24.991 6.8446 1 115430 11429 1538 7068 7074 14296 14296 -0.03910536310718271 GYSWHEPL 8 Unmodified _GYSWHEPL_ 0 0 0 REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7 REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7 MSMS UPN48_class_I_Rep_1 5 494.7185363769531 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 117.55 1 121.17 120.67 121.67 3.6215 0 0 0 0.40604 1 28646 28646 2.5775 0 1 + 11430 20186 7069 7075 14297 14297 -0.04919361170709635 GYTAAIPFWRN 11 Unmodified _GYTAAIPFWRN_ 0 0 0 nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 MULTI-MSMS UPN48_class_I_Rep_1 5 648.33056640625 2 648.330205 1294.64586 0.48678 0.00031559 -0.16579 -0.00010748 0.32099 0.00020811 648.3299787314793 69.948 0.70486 73.408 73.131 73.836 3.4598 122 54 3 0 0 0 0.48412 5 16207 16207;16326;16366;16376;16382 8.1555 3.6267 1 269180 11431 2965 7070 7076 14298;14299;14300;14301;14302 14298 0.0103190814595564 GYTAAIPFWRN 11 Unmodified _GYTAAIPFWRN_ 0 0 0 nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 MULTI-MSMS UPN48_class_I_Rep_2 6 648.8319702148438 2 648.330205 1294.64586 0.49837 0.00032311 -0.14733 -9.5516E-05 0.35105 0.00022759 648.330056252313 69.813 0.81367 73.334 73.001 73.815 3.5216 123 68 3 0 0 0 0.48412 5 16121 16121;16161;16232;16268;16306 8.1555 8.1555 1 320780 11432 2965 7070 7076 14303;14304;14305;14306;14307 14303 0.0103190814595564 GYTAAIPFWRN 11 Unmodified _GYTAAIPFWRN_ 0 0 0 nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 MULTI-MSMS UPN48_class_I_Rep_3 7 648.3306884765625 2 648.330205 1294.64586 0.7134 0.00046252 -0.41201 -0.00026712 0.30139 0.0001954 648.3298533650392 69.713 1.0137 73.226 72.926 73.94 3.5128 170 86 3 0 0 0 0.48412 4 16022 16022;16141;16179;16221 8.1555 4.2111 1 296120 11433 2965 7070 7076 14308;14309;14310;14311 14308 0.0103190814595564 GYTEQLALY 9 Unmodified _GYTEQLALY_ 0 0 0 MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 529.2637939453125 2 529.263665 1056.51278 0.35666 0.00018877 0.021336 1.1292E-05 0.378 0.00020006 529.2635982197528 71.782 0.77438 75.248 74.932 75.707 3.466 169 71 3 0 0 0 0.061943 4 16786 16786;16824;16862;16897 43.858 5.8843 1 495570 11434 16538 7071 7077 14312;14313;14314;14315 14312 -0.013219560305742561 GYTEQLALY 9 Unmodified _GYTEQLALY_ 0 0 0 MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2639770507812 2 529.263665 1056.51278 0.4078 0.00021583 0.032558 1.7232E-05 0.44036 0.00023307 529.2635698081646 71.593 0.77418 75.144 74.839 75.613 3.5505 190 80 3 0 0 0 0.061943 5 16710 16642;16671;16710;16747;16782 43.858 5.8843 1 571740 11435 16538 7071 7077 14316;14317;14318;14319;14320 14318 -0.013219560305742561 GYTEQLALY 9 Unmodified _GYTEQLALY_ 0 0 0 MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MSTA-int_dup1108|chr6:142212942-142214389:-|1.9215884044224965|0.1597146119761385|3.59|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 529.2637329101562 2 529.263665 1056.51278 0.53858 0.00028505 -0.13636 -7.2171E-05 0.40222 0.00021288 529.263457113524 71.592 0.8805 75.118 74.823 75.703 3.5266 192 84 3 0 0 0 0.061943 5 16602 16602;16639;16674;16710;16744 43.858 5.8843 1 651460 11436 16538 7071 7077 14321;14322;14323;14324;14325 14321 -0.013219560305742561 GYTHRRKCI 9 Unmodified _GYTHRRKCI_ 0 0 0 REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|57|1|sense REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|57|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.302734375 2 567.303467 1132.59238 0.51055 0.00028964 -0.67248 -0.0003815 -0.16194 -9.1867E-05 567.3028119206241 66.298 0.2859 69.785 69.54 69.826 3.4866 28 19 2 0 0 0 0.37599 1 15143 15143 9.3831 0 1 67717 + 11437 29114 7072 7078 14326 14326 0.03138832162426297 GYTHRRKCI 9 Unmodified _GYTHRRKCI_ 0 0 0 REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|57|1|sense REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|57|1|sense MSMS UPN48_class_I_Rep_2 6 567.30419921875 2 567.303467 1132.59238 NaN NaN NaN NaN NaN NaN NaN 66.413 1 69.9 69.4 70.4 3.4866 0 0 0 0.37692 1 15170 15170 6.2058 0 1 + 11438 29114 7072 7078 14327 14327 0.03138832162426297 GYTTDYSVID 10 Unmodified _GYTTDYSVID_ 0 0 0 L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|40|3|anti-sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|40|3|anti-sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.2542724609375 2 567.253494 1132.49243 NaN NaN NaN NaN NaN NaN NaN 28.801 1 32.354 31.854 32.854 3.5529 0 0 0 0.53105 1 3910 3910 1.6526 0.32309 1 11439 12259 7073 7079 14328 14328 -0.06851171481048368 GYVFVLSPNF 10 Unmodified _GYVFVLSPNF_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|144|2|anti-sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|144|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 571.7979125976562 2 571.797675 1141.5808 0.4582 0.000262 -0.26816 -0.00015333 0.19004 0.00010866 571.7974058445254 68.089 0.54089 71.54 71.258 71.799 3.4517 73 44 2 0 0 0 0.52562 1 15742 15742 8.7454 0.58988 1 135700 + 11440 29476 7074 7080 14329 14329 0.0156691362010406 GYVKTGRDW 9 Unmodified _GYVKTGRDW_ 0 0 0 MLT1C_dup2300|chr2:171529849-171530302:+|1.9008974255552136|0.1147096927508583|4.05|151.0|11|2|sense MLT1C_dup2300|chr2:171529849-171530302:+|1.9008974255552136|0.1147096927508583|4.05|151.0|11|2|sense MLT1C_dup2300|chr2:171529849-171530302:+|1.9008974255552136|0.1147096927508583|4.05|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 541.274658203125 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 41.254 1 44.491 43.991 44.991 3.2372 0 0 0 0.39518 1 8352 8352 1.8442 0 1 11441 16310 7075 7081 14330 14330 -0.0018031184229130304 GYVWHEYFY 9 Unmodified _GYVWHEYFY_ 0 0 0 REV__MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|38|2|anti-sense REV__MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|38|2|anti-sense MSMS UPN47_class_I_Rep_3 4 421.8548583984375 3 421.85383 1262.53966 NaN NaN NaN NaN NaN NaN NaN 25.433 1 28.784 28.284 29.284 3.3509 0 0 0 0.39326 1 3575 3575 1.1933 0 1 + 11442 31607 7076 7082 14331 14331 -0.08110847419379752 GYVWSGYI 8 Unmodified _GYVWSGYI_ 0 0 0 REV__ENSG00000174417|ENST00000518632|TRHR REV__ENSG00000174417|ENST00000518632|TRHR MSMS UPN48_class_I_Rep_2 6 472.72802734375 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 105.47 1 109.16 108.66 109.66 3.6901 0 0 0 0.40364 1 24947 24947 5.7604 0.52976 1 + 11443 20521 7077 7083 14332 14332 -0.030015755396107124 GYYQHLEG 8 Unmodified _GYYQHLEG_ 0 0 0 MER20_dup15038|chr19:7384145-7384363:-|4.682540659285055|0.0535898883372569|6.45|151.0|2|1|sense MER20_dup15038|chr19:7384145-7384363:-|4.682540659285055|0.0535898883372569|6.45|151.0|2|1|sense MER20_dup15038|chr19:7384145-7384363:-|4.682540659285055|0.0535898883372569|6.45|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 483.7198486328125 2 483.719424 965.424296 NaN NaN NaN NaN NaN NaN NaN 72.595 1 75.893 75.393 76.393 3.2971 0 0 0 0.40738 1 17803 17803 0.79363 0 1 11444 15835 7078 7084 14333 14333 -0.059799515503755174 HAADKDVPE 9 Unmodified _HAADKDVPE_ 0 0 0 THE1A_dup2701|chrX:118593450-118593801:-|1.0227930022187388|0.0251498683288968|5.35|151.0|18|2|anti-sense THE1A_dup2701|chrX:118593450-118593801:-|1.0227930022187388|0.0251498683288968|5.35|151.0|18|2|anti-sense THE1A_dup2701|chrX:118593450-118593801:-|1.0227930022187388|0.0251498683288968|5.35|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_2 3 491.2349853515625 2 491.235439 980.456324 NaN NaN NaN NaN NaN NaN NaN 29.551 1 33.043 32.543 33.543 3.4923 0 0 0 0.38916 1 4749 4749 3.2813 0.70383 1 11445 32862 7079 7085 14334 14334 -0.034685838672317004 HAAKWARR 8 Unmodified _HAAKWARR_ 0 0 0 REV__L1PA2_dup3007|chrX:65614681-65620735:-|1.7319222270933985|0.0399095824082452|5.44|150.0|97|3|sense REV__L1PA2_dup3007|chrX:65614681-65620735:-|1.7319222270933985|0.0399095824082452|5.44|150.0|97|3|sense MSMS UPN48_class_I_Rep_1 5 498.2856140136719 2 498.285934 994.557316 NaN NaN NaN NaN NaN NaN NaN 38.735 1 42.24 41.74 42.74 3.5048 0 0 0 0.40404 1 6749 6749 5.2307 0.90143 1 + 11446 29487 7080 7086 14335 14335 0.05981957416793193 HAARIDFWV 9 Unmodified _HAARIDFWV_ 0 0 0 L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|95|3|anti-sense L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|95|3|anti-sense L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|95|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.7924194335938 2 557.793258 1113.57196 0.51647 0.00028808 -1.146 -0.00063922 -0.6295 -0.00035113 557.7923580744015 53.017 0.64272 56.344 56.106 56.749 3.3266 47 36 2 0 0 0 0.42249 1 11894 11894 6.7232 0.99131 1 71903 11447 12726 7081 7087 14336 14336 0.019719847742635466 HAAYTDEKSF 10 Unmodified _HAAYTDEKSF_ 0 0 0 REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|51|1|sense REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|51|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 584.7673950195312 2 584.767103 1167.51965 0.44864 0.00026235 -0.12316 -7.2022E-05 0.32548 0.00019033 584.7669426699753 70.351 0.9276 73.562 73.181 74.109 3.2113 195 80 3 0 0 0 0.55448 1 17312 17312 4.897 4.897 1 534000 + 11448 29789 7082 7088 14337 14337 -0.057406431500112376 HACFIYNQ 8 Unmodified _HACFIYNQ_ 0 0 0 L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|18|1|anti-sense L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|18|1|anti-sense L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 498.2222900390625 2 498.22382 994.433086 NaN NaN NaN NaN NaN NaN NaN 69.923 1 73.294 72.794 73.794 3.3704 0 0 0 0.40738 1 16969 16969 0.79363 0 1 11449 12958 7083 7089 14338 14338 -0.06435301185558728 HACIHTHIY 9 Unmodified _HACIHTHIY_ 0 0 0 REV__ENST00000527636.5_3_11:12958765-12958912:+|nuORF REV__ENST00000527636.5_3_11:12958765-12958912:+|nuORF MSMS UPN48_class_I_Rep_2 6 547.6372680664062 2 547.763643 1093.51273 NaN NaN NaN NaN NaN NaN NaN 43.978 1 47.74 47.24 48.24 3.7617 0 0 0 0.39326 1 8330 8330 2.3027 0 1 + 11450 22821 7084 7090 14339 14339 -0.030282345115438147 HACLHVIFF 9 Unmodified _HACLHVIFF_ 0 0 0 L1M5_dup40406|chr12:109968014-109968429:-|2.110499624668311|0.0538148889206901|5.29|151.0|31|3|anti-sense L1M5_dup40406|chr12:109968014-109968429:-|2.110499624668311|0.0538148889206901|5.29|151.0|31|3|anti-sense L1M5_dup40406|chr12:109968014-109968429:-|2.110499624668311|0.0538148889206901|5.29|151.0|31|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7828979492188 2 543.781305 1085.54806 NaN NaN NaN NaN NaN NaN NaN 48.538 1 51.885 51.385 52.385 3.3465 0 0 0 0.39326 1 10503 10503 2.3027 0 1 11451 9160 7085 7091 14340 14340 0.008704280162646683 HADLEIRL 8 Unmodified _HADLEIRL_ 0 0 0 ENST00000565830.5_1_16:29841852-29843003:+|nuORF;ENSG00000013364|ENST00000357402|MVP ENST00000565830.5_1_16:29841852-29843003:+|nuORF ENST00000565830.5_1_16:29841852-29843003:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 483.7720031738281 2 483.771991 965.529429 -0.024933 -1.2062E-05 -0.18054 -8.7338E-05 -0.20547 -9.94E-05 483.77198707914664 44.928 0.42365 48.283 48.09 48.514 3.3556 31 23 2 0 0 0 0.82752 1 9395 9395 13.906 3.0821 1 58941 11452 786 7086 7092 14341 14341 0.04528589646054115 HAEEGEDRF 9 Unmodified _HAEEGEDRF_ 0 0 0 nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B MSMS UPN47_class_I_Rep_1 2 545.2327270507812 2 545.233427 1088.4523 NaN NaN NaN NaN NaN NaN NaN 30.637 1 34.382 33.882 34.882 3.7449 0 0 0 0.39598 1 5034 5034 1.6526 0.17072 1 11453 3507 7087 7093 14342 14342 -0.08838673360946814 HAEEIFEF 8 Unmodified _HAEEIFEF_ 0 0 0 REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10 REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10 MSMS UPN48_class_I_Rep_1 5 510.79949951171875 2 511.234907 1020.45526 NaN NaN NaN NaN NaN NaN NaN 59.809 1 63.289 62.789 63.789 3.4801 0 0 0 0.40604 1 13174 13174 2.5775 0 1 + 11454 19452 7088 7094 14343 14343 -0.05414798236131446 HAEEIFEF 8 Unmodified _HAEEIFEF_ 0 0 0 REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10 REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10 MSMS UPN48_class_I_Rep_1 5 511.2344055175781 2 511.234907 1020.45526 NaN NaN NaN NaN NaN NaN NaN 60.121 1 63.595 63.095 64.095 3.4737 0 0 0 0.40604 1 13270 13270 2.5775 0 1 + 11455 19452 7088 7094 14344 14344 -0.05414798236131446 HAELYRELT 9 Unmodified _HAELYRELT_ 0 0 0 REV__ENSG00000158246|ENST00000289166|TENT5B REV__ENSG00000158246|ENST00000289166|TENT5B MULTI-MSMS UPN47_class_I_Rep_2 3 566.2931518554688 2 566.293288 1130.57202 0.47603 0.00026957 -0.29023 -0.00016435 0.1858 0.00010522 566.2932173188127 50.936 0.57111 54.275 53.961 54.532 3.3386 43 30 2 0 0 0 0.48846 1 11251 11251 1.8442 0 1 85780 + 11456 19841 7089 7095 14345 14345 0.011959399836086959 HAERNWSRQS 10 Unmodified _HAERNWSRQS_ 0 0 0 REV__LTR102_Mam_dup148|chr6:24987412-24987667:-|1.0893746535912394|0.0064836217223983|7.39|149.0|11|1|anti-sense REV__LTR102_Mam_dup148|chr6:24987412-24987667:-|1.0893746535912394|0.0064836217223983|7.39|149.0|11|1|anti-sense MSMS UPN47_class_I_Rep_1 2 635.8060302734375 2 635.805417 1269.59628 NaN NaN NaN NaN NaN NaN NaN 53.615 1 57.143 56.643 57.643 3.5278 0 0 0 0.53105 1 12026 12026 1.1933 0 1 + 11457 30777 7090 7096 14346 14346 -0.0277340681016085 HAESFSHS 8 Unmodified _HAESFSHS_ 0 0 0 MLT1H_dup2303|chr3:195367509-195367997:+|1.291311605576295|0.0055224479554018|7.87|150.0|6|1|sense MLT1H_dup2303|chr3:195367509-195367997:+|1.291311605576295|0.0055224479554018|7.87|150.0|6|1|sense MLT1H_dup2303|chr3:195367509-195367997:+|1.291311605576295|0.0055224479554018|7.87|150.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 450.770751953125 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 50.096 1 53.322 52.822 53.822 3.2262 0 0 0 0.40604 1 11037 11037 2.5775 0 1 11458 16424 7091 7097 14347 14347 -0.08157695244278784 HAFFFYVYF 9 Unmodified _HAFFFYVYF_ 0 0 0 L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_1 2 620.7969970703125 2 620.794935 1239.57532 NaN NaN NaN NaN NaN NaN NaN 70.691 1 74.063 73.563 74.563 3.3713 0 0 0 0.381 1 17193 17193 5.2307 1.6342 1 11459 13429 7092 7098 14348 14348 -0.03488765171732666 HAFLTCINYF 10 Unmodified _HAFLTCINYF_ 0 0 0 L1MB7_dup7875|chr6:108218046-108219062:+|1.6601751656005272|0.1487254183940052|3.48|151.0|47|2|anti-sense L1MB7_dup7875|chr6:108218046-108219062:+|1.6601751656005272|0.1487254183940052|3.48|151.0|47|2|anti-sense L1MB7_dup7875|chr6:108218046-108219062:+|1.6601751656005272|0.1487254183940052|3.48|151.0|47|2|anti-sense MSMS UPN47_class_I_Rep_1 2 614.7960205078125 2 614.794609 1227.57467 NaN NaN NaN NaN NaN NaN NaN 54.155 1 57.656 57.156 58.156 3.5014 0 0 0 0.53105 1 12193 12193 4.897 1.3005 1 11460 10877 7093 7099 14349 14349 -0.030019278830877738 HAFLTCINYF 10 Unmodified _HAFLTCINYF_ 0 0 0 L1MB7_dup7875|chr6:108218046-108219062:+|1.6601751656005272|0.1487254183940052|3.48|151.0|47|2|anti-sense L1MB7_dup7875|chr6:108218046-108219062:+|1.6601751656005272|0.1487254183940052|3.48|151.0|47|2|anti-sense L1MB7_dup7875|chr6:108218046-108219062:+|1.6601751656005272|0.1487254183940052|3.48|151.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 614.7954711914062 2 614.794609 1227.57467 0.51705 0.00031788 1.6564 0.0010183 2.1734 0.0013362 614.7953684568996 54.413 0.44951 57.731 57.45 57.899 3.3187 28 22 2 0 0 0 0.55583 1 12262 12262 4.897 0.56777 1 70335 11461 10877 7093 7099 14350 14350 -0.030019278830877738 HAGEGIPIGVY 11 Unmodified _HAGEGIPIGVY_ 0 0 0 REV__ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|4|intron REV__ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|4|intron MSMS UPN47_class_I_Rep_2 3 556.7894897460938 2 556.790381 1111.56621 NaN NaN NaN NaN NaN NaN NaN 55.001 1 58.311 57.811 58.811 3.3102 0 0 0 0.38417 1 12479 12479 2.9952 0.10602 1 + 11462 18711 7094 7100 14351 14351 0.01488841471973501 HAGLPPEQPVS 11 Unmodified _HAGLPPEQPVS_ 0 0 0 REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|184|3|anti-sense REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|184|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.2930297851562 2 566.293288 1130.57202 0.47603 0.00026957 -0.29023 -0.00016435 0.1858 0.00010522 566.2932173188127 50.936 0.57111 54.275 53.961 54.532 3.3386 43 30 2 0 0 0 0.65559 1 11197 11197 2.7352 0.89096 1 85780 + 11463 32707 7095 7101 14352 14352 0.011959399836086959 HAGPYWQQT 9 Unmodified _HAGPYWQQT_ 0 0 0 REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|200|1|anti-sense REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|200|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.250244140625 2 544.251423 1086.48829 0.059395 3.2326E-05 -1.5004 -0.00081661 -1.441 -0.00078429 544.2503334034426 42.124 0.51333 45.803 45.549 46.062 3.6792 67 34 3 0 0 0 0.46434 1 8523 8523 4.3292 1.0479 1 98532 + 11464 23530 7096 7102 14353 14353 -0.051491713934410654 HAHFHHCY 8 Unmodified _HAHFHHCY_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|43|1|sense;L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|77|2|sense;L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|8|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|43|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|43|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.2197265625 2 526.219403 1050.42425 -0.17297 -9.1022E-05 0.85556 0.00045021 0.68258 0.00035919 526.2196868012679 16.784 0.32364 20.306 20.164 20.488 3.5224 70 37 2 0 0 0 0.82752 1 1123 1123 2.8892 0 1 29720 11465 9477 7097 7103 14354 14354 -0.09894230031363804 HAHPGGLWTR 10 Unmodified _HAHPGGLWTR_ 0 0 0 REV__L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|5|1|sense REV__L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.2942504882812 2 566.293956 1130.57336 0.24817 0.00014054 -1.2774 -0.00072341 -1.0293 -0.00058287 566.2930204201713 50.626 0.49707 54.255 53.988 54.485 3.6285 33 21 2 0 0 0 0.56118 1 11083 11083 2.9952 0.26005 1 60249 + 11466 29781 7098 7104 14355 14355 0.013296188630192773 HAIFCLLFY 9 Unmodified _HAIFCLLFY_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|30|2|sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 563.7782592773438 2 563.791338 1125.56812 NaN NaN NaN NaN NaN NaN NaN 74.893 1 78.206 77.706 78.706 3.3127 0 0 0 0.3264 1 18469 18469 9.3474 0 1 + 11467 32546 7099 7105 14356 14356 0.010361789562011836 HAIGHHHEL 9 Unmodified _HAIGHHHEL_ 0 0 0 HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|11|2|sense HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|11|2|sense HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 525.7644653320312 2 525.765032 1049.51551 NaN NaN NaN NaN NaN NaN NaN 54.24 1 57.741 57.241 58.241 3.5014 0 0 0 0.38478 1 12219 12219 4.3292 2.485 1 11468 7908 7100 7106 14357 14357 -0.007266430623985798 HAIWYASGE 9 Unmodified _HAIWYASGE_ 0 0 0 REV__ENSG00000124357|ENST00000244204|NAGK REV__ENSG00000124357|ENST00000244204|NAGK MSMS UPN47_class_I_Rep_1 2 516.814697265625 2 517.240524 1032.46649 NaN NaN NaN NaN NaN NaN NaN 30.549 1 34.294 33.794 34.794 3.7449 0 0 0 0.39428 1 5007 5007 2.0598 0 1 + 11469 18806 7101 7107 14358 14358 -0.04843976142001338 HAIYTSPCEL 10 Unmodified _HAIYTSPCEL_ 0 0 0 Charlie10_dup536|chr7:65910794-65911582:-|1.1686019011251478|0.0050187746263081|7.86|149.0|46|2|anti-sense Charlie10_dup536|chr7:65910794-65911582:-|1.1686019011251478|0.0050187746263081|7.86|149.0|46|2|anti-sense Charlie10_dup536|chr7:65910794-65911582:-|1.1686019011251478|0.0050187746263081|7.86|149.0|46|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.2680053710938 2 567.268424 1132.5223 0.39053 0.00022154 -0.53637 -0.00030426 -0.14584 -8.2728E-05 567.2679339720669 49.075 0.73073 52.422 51.885 52.616 3.3465 60 44 2 0 0 0 0.56078 1 10617 10617 3.2813 0.70383 1 109620 11470 437 7102 7108 14359 14359 -0.038665110166903105 HAKDEPDSPVL 11 Unmodified _HAKDEPDSPVL_ 0 0 0 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 MULTI-MSMS UPN47_class_I_Rep_2 3 604.301513671875 2 604.30131 1206.58807 0.45928 0.00027754 0.024845 1.5014E-05 0.48412 0.00029256 604.3012696798097 61.535 1.5788 64.794 64.369 65.948 3.2594 293 103 5 0 0 0 0.59712 1 14365 14365 5.2969 1.1074 1 3363600 11471 4420 7103 7109 14360 14360 -0.006963985701531783 HAKKVKKI 8 Unmodified _HAKKVKKI_ 0 0 0 REV__L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|21|2|sense REV__L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 476.32794189453125 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 108.63 1 108.63 108.13 109.13 0 0 0 0 0.40364 1 26580 26580 5.7604 3.1829 1 + 11472 26217 7104 7110 14361 14361 0.16162640056029431 HAKKVKKI 8 Unmodified _HAKKVKKI_ 0 0 0 REV__L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|21|2|sense REV__L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|21|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 476.32794189453125 2 476.326737 950.63892 0.2565 0.00012218 -0.23056 -0.00010982 0.025944 1.2358E-05 476.32654637180354 108.77 0.29649 108.77 108.58 108.88 0 47 33 2 0 0 0 0.72333 1 26580 26580 5.7604 3.1829 1 6206100 + 11473 26217 7104 7110 14362 14362 0.16162640056029431 HAKRKTVTA 9 Unmodified _HAKRKTVTA_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS UPN47_class_I_Rep_1 2 506.3060607910156 2 506.306532 1010.59851 -0.29494 -0.00014933 -0.35207 -0.00017826 -0.64701 -0.00032759 506.3062880247269 12.563 0.45552 16.013 15.925 16.381 3.45 94 50 2 0 0 0 0.048662 1 108 108 49.554 26.818 1 295480 11474 3798 7105 7111 14363 14363 0.0936367366560944 HAKRKTVTA 9 Unmodified _HAKRKTVTA_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS UPN47_class_I_Rep_2 3 506.3060302734375 2 506.306532 1010.59851 -0.22736 -0.00011511 -0.47561 -0.00024081 -0.70297 -0.00035592 506.3062324444615 12.607 0.42528 15.995 15.908 16.334 3.3885 104 50 3 0 0 0 0.033731 1 109 109 55.503 26.421 1 215480 11475 3798 7105 7111 14364 14364 0.0936367366560944 HAKRKTVTA 9 Unmodified _HAKRKTVTA_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8;ENSG00000275663|ENST00000611444|H4C7 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS UPN47_class_I_Rep_3 4 506.30596923828125 2 506.306532 1010.59851 -0.63286 -0.00032042 -0.10052 -5.0895E-05 -0.73338 -0.00037132 506.30640193707995 12.505 0.529 15.88 15.726 16.255 3.3753 143 67 3 0 0 0 0.088679 1 91 91 36.506 13.77 1 260900 11476 3798 7105 7111 14365 14365 0.0936367366560944 HAKSTLPVL 9 Unmodified _HAKSTLPVL_ 0 0 0 Tigger1_dup10318|chr15:42534429-42535344:-|1.3044041384065448|0.2972594346385895|2.13|151.0|30|3|sense Tigger1_dup10318|chr15:42534429-42535344:-|1.3044041384065448|0.2972594346385895|2.13|151.0|30|3|sense Tigger1_dup10318|chr15:42534429-42535344:-|1.3044041384065448|0.2972594346385895|2.13|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.29278564453125 2 483.292559 964.570566 -0.16061 -7.7622E-05 -0.083339 -4.0277E-05 -0.24395 -0.0001179 483.29251663085597 44.78 0.60953 48.48 48.191 48.8 3.6999 54 42 2 0 0 0 0.36392 1 9342 9342 10.074 10.074 1 117490 11477 32975 7106 7112 14366 14366 0.08686350685513844 HAKTHTEK 8 Unmodified _HAKTHTEK_ 0 0 0 REV__L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|15|1|sense REV__L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 476.2542724609375 2 476.253966 950.493378 0.101 4.8104E-05 0.16518 7.8667E-05 0.26618 0.00012677 476.2540307723908 94.747 1.59 98.364 97.524 99.114 3.6167 289 196 2 0 0 0 0.82752 1 22772 22772 7.9102 7.9102 1 238340 + 11478 24497 7107 7113 14367 14367 0.016151324691804803 HAKTSIPIY 9 Unmodified _HAKTSIPIY_ 0 0 0 L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|28|2|sense L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|28|2|sense L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|28|2|sense MSMS UPN47_class_I_Rep_3 4 514.8269653320312 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 44.594 1 47.838 47.338 48.338 3.2441 0 0 0 0.39326 1 9367 9367 2.3027 0 1 11479 14884 7108 7114 14368 14368 0.05234046822897653 HAKVAIFKR 9 Unmodified _HAKVAIFKR_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS UPN48_class_I_Rep_3 7 535.33544921875 2 535.335093 1068.65563 0.54717 0.00029292 0.36755 0.00019676 0.91472 0.00048968 535.3351701258932 108.71 0.38185 112.39 112.25 112.63 3.6751 106 42 3 0 0 0 0.35081 1 25827 25827 10.824 10.824 1 65169000 + 11480 21359 7109 7115 14369 14369 0.12405140941973514 HAKVAIFKR 9 Unmodified _HAKVAIFKR_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 535.335093 1068.65563 0.57069 0.00030551 0.48792 0.0002612 1.0586 0.00056671 535.3352692689732 108.79 0.58104 112.32 112.11 112.7 3.5333 -0.05196 0.00010991 NaN 10.824 239 66 4 NaN NaN NaN NaN 0 NaN NaN 0 88598000 + 11481 21359 7109 7115 0.12405140941973514 HAKVAIFKR 9 Unmodified _HAKVAIFKR_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 535.335093 1068.65563 0.47925 0.00025656 0.47904 0.00025645 0.95829 0.000513 535.3352535808298 108.74 0.61553 112.28 112.13 112.74 3.5382 -0.090016 0.0001004 NaN 10.824 206 70 4 NaN NaN NaN NaN 0 NaN NaN 0 97692000 + 11482 21359 7109 7115 0.12405140941973514 HAKVAIFKR 9 Unmodified _HAKVAIFKR_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 535.335093 1068.65563 0.44864 0.00024017 0.37828 0.00020251 0.82691 0.00044268 535.3351818568894 108.76 0.54192 112.44 112.29 112.83 3.6746 0.067994 -7.4788E-06 NaN 10.824 199 59 4 NaN NaN NaN NaN 0 NaN NaN 0 62657000 + 11483 21359 7109 7115 0.12405140941973514 HAKVHIVTE 9 Unmodified _HAKVHIVTE_ 0 0 0 REV__nc|ENSG00000072415|Q8N3R9-2|PALS1 REV__nc|ENSG00000072415|Q8N3R9-2|PALS1 MULTI-SECPEP UPN47_class_I_Rep_1 2 516.6669311523438 2 517.293091 1032.57163 -0.15308 -7.9186E-05 0.39398 0.0002038 0.24091 0.00012462 517.2931557717741 35.285 0.76193 38.961 38.658 39.42 3.6762 79 52 2 0 0 0 0.12477 1 6563 6563 1.6526 0 1 112390 + 11484 17828 7110 7116 14370 14370 0.05664565054416926 HAKVHIVTE 9 Unmodified _HAKVHIVTE_ 0 0 0 REV__nc|ENSG00000072415|Q8N3R9-2|PALS1 REV__nc|ENSG00000072415|Q8N3R9-2|PALS1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 517.293091 1032.57163 -0.2474 -0.00012798 0.41278 0.00021353 0.16538 8.5552E-05 517.293240812649 35.994 0.86416 39.249 38.837 39.701 3.2547 0.14692 -1.2479E-05 NaN 1.6526 91 56 2 NaN NaN NaN NaN 0 NaN NaN 0 87262 + 11485 17828 7110 7116 0.05664565054416926 HAKWKFWL 8 Unmodified _HAKWKFWL_ 0 0 0 REV__L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|106|3|anti-sense REV__L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|106|3|anti-sense MSMS UPN47_class_I_Rep_1 2 558.3115234375 2 558.311087 1114.60762 NaN NaN NaN NaN NaN NaN NaN 67.569 1 70.93 70.43 71.43 3.3611 0 0 0 0.40746 1 16256 16256 0.69038 0 1 + 11486 28619 7111 7117 14371 14371 0.054900670219240055 HALAGKRW 8 Unmodified _HALAGKRW_ 0 0 0 REV__L1MA8_dup10730|chr21:35031364-35031823:+|4.276749112579852|0.00497932220114|9.75|151.0|10|3|sense REV__L1MA8_dup10730|chr21:35031364-35031823:+|4.276749112579852|0.00497932220114|9.75|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 469.7710876464844 2 469.769586 937.524619 0.24577 0.00011546 2.541 0.0011937 2.7867 0.0013091 469.77066366454017 52.519 0.12462 56.158 56.134 56.259 3.639 12 8 2 0 0 0 0.82752 1 10922 10922 0.79363 0 1 160970 + 11487 25530 7112 7118 14372 14372 0.05335750293932051 HALAGKRW 8 Unmodified _HALAGKRW_ 0 0 0 REV__L1MA8_dup10730|chr21:35031364-35031823:+|4.276749112579852|0.00497932220114|9.75|151.0|10|3|sense REV__L1MA8_dup10730|chr21:35031364-35031823:+|4.276749112579852|0.00497932220114|9.75|151.0|10|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 469.769586 937.524619 0.067838 3.1868E-05 3.8121 0.0017908 3.8799 0.0018227 469.7712470889167 52.512 0.039948 56.109 56.089 56.129 3.5979 -0.024312 0.00061361 NaN 0.79363 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 139930 + 11488 25530 7112 7118 0.05335750293932051 HALEHTYSDK 10 Unmodified _HALEHTYSDK_ 0 0 0 ENST00000468890.1_1_10:115614631-115618462:+|nuORF;ENSG00000196865.4,NHLRC2,chr10,+,I10.1,113905037,113908279|23|4.62|3|intron;ENSG00000196865|ENST00000369301|NHLRC2 ENST00000468890.1_1_10:115614631-115618462:+|nuORF ENST00000468890.1_1_10:115614631-115618462:+|nuORF MSMS UPN47_class_I_Rep_2 3 600.783935546875 2 600.785827 1199.5571 NaN NaN NaN NaN NaN NaN NaN 55.153 1 58.463 57.963 58.963 3.3102 0 0 0 0.53105 1 12525 12525 3.5965 0.31518 1 11489 5334 7113 7119 14373 14373 -0.03469551884381872 HALFHKVL 8 Unmodified _HALFHKVL_ 0 0 0 REV__MER63B_dup939|chr6:166981092-166981506:-|1.2896774836809104|0.370111000936716|1.8|151.0|15|3|sense REV__MER63B_dup939|chr6:166981092-166981506:-|1.2896774836809104|0.370111000936716|1.8|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 483.2196044921875 2 482.789987 963.565421 NaN NaN NaN NaN NaN NaN NaN 29.559 1 32.882 32.382 33.382 3.3235 0 0 0 0.40738 1 4796 4796 0.79363 0 1 + 11490 31517 7114 7120 14374 14374 0.08218091613559864 HALFLPWYSY 10 Unmodified _HALFLPWYSY_ 0 0 0 REV__MLT1J-int_dup745|chr7:141680970-141682319:+|1.1090695787328595|0.1785425951188853|2.64|151.0|70|2|anti-sense REV__MLT1J-int_dup745|chr7:141680970-141682319:+|1.1090695787328595|0.1785425951188853|2.64|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_2 6 432.8852233886719 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 97.379 1 101.16 100.66 101.66 3.779 0 0 0 0.53105 1 23141 23141 0.69767 0 1 + 11491 31785 7115 7121 14375 14375 -0.002097085972309287 HALFRNVL 8 Unmodified _HALFRNVL_ 0 0 0 L1MD_dup6623|chr12:118332829-118333761:+|3.7551454419664494|0.0110007505314298|8.42|151.0|37|1|anti-sense L1MD_dup6623|chr12:118332829-118333761:+|3.7551454419664494|0.0110007505314298|8.42|151.0|37|1|anti-sense L1MD_dup6623|chr12:118332829-118333761:+|3.7551454419664494|0.0110007505314298|8.42|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2862854003906 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 43.162 1 46.672 46.172 47.172 3.5103 0 0 0 0.40581 1 8070 8070 2.8892 0.58649 1 11492 11890 7116 7122 14376 14376 0.07004903608185487 HALHMHTLTY 10 Unmodified _HALHMHTLTY_ 0 0 0 REV__HAL1_dup4114|chr3:11815043-11815973:+|2.258328414433741|0.2752041726959389|3.04|151.0|61|3|anti-sense REV__HAL1_dup4114|chr3:11815043-11815973:+|2.258328414433741|0.2752041726959389|3.04|151.0|61|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 612.839599609375 2 612.303133 1222.59171 0.5342 0.00032709 -4.3889 -0.0026873 -3.8547 -0.0023602 612.3006876904001 57.889 0.18765 61.383 61.317 61.504 3.4942 7 4 2 0 0 0 0.52562 1 12579 12579 8.7454 0.58988 1 144750 + 11493 23424 7117 7123 14377 14377 -0.0106800727726295 HALKNHLY 8 Unmodified _HALKNHLY_ 0 0 0 REV__nc|ENSG00000118985|O00472-2|ELL2 REV__nc|ENSG00000118985|O00472-2|ELL2 MSMS UPN46_class_I_Rep_3 1 498.2849426269531 2 498.274701 994.534849 NaN NaN NaN NaN NaN NaN NaN 43.601 1 43.601 43.101 44.101 0 0 0 0 0.39408 1 8718 8718 10.183 0.83596 1 + 11494 18663 7118 7124 14378 14378 0.03736313228512245 HALLCRAW 8 Unmodified _HALLCRAW_ 0 0 0 ENST00000346246.9_1_15:74888552-74888642:+|nuORF ENST00000346246.9_1_15:74888552-74888642:+|nuORF ENST00000346246.9_1_15:74888552-74888642:+|nuORF MSMS UPN48_class_I_Rep_1 5 484.7875061035156 2 485.257997 968.501441 NaN NaN NaN NaN NaN NaN NaN 56.889 1 60.383 59.883 60.883 3.4942 0 0 0 0.40581 1 12279 12279 2.8892 0 1 11495 6261 7119 7125 14379 14379 0.015929881849615413 HALLIYTT 8 Unmodified _HALLIYTT_ 0 0 0 ENST00000405154.6_1_12:26222190-26222259:+|nuORF ENST00000405154.6_1_12:26222190-26222259:+|nuORF ENST00000405154.6_1_12:26222190-26222259:+|nuORF MSMS UPN47_class_I_Rep_2 3 466.2771301269531 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 110.94 1 114.46 113.96 114.96 3.5271 0 0 0 0.40604 1 27003 27003 2.5775 0 1 11496 6609 7120 7126 14380 14380 0.04942972902836118 HALLWEVL 8 Unmodified _HALLWEVL_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MSMS UPN47_class_I_Rep_2 3 490.7825012207031 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.84 1 115.36 114.86 115.86 3.5226 0 0 0 0.40738 1 27235 27235 0.79363 0 1 11497 5360 7121 7127 14381 14381 0.05850965656816243 HALWRCSQS 9 Unmodified _HALWRCSQS_ 0 0 0 REV__nc|ENSG00000105784|Q96NL0|RUNDC3B REV__nc|ENSG00000105784|Q96NL0|RUNDC3B MSMS UPN47_class_I_Rep_2 3 544.2472534179688 2 544.258725 1086.5029 NaN NaN NaN NaN NaN NaN NaN 49.043 1 52.39 51.89 52.89 3.3465 0 0 0 0.37891 1 10657 10657 5.7319 1.4026 1 + 11498 31953 7122 7128 14382 14382 -0.03689422516936247 HALYLAEN 8 Unmodified _HALYLAEN_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11;ENST00000534551.2_1_11:118947733-118948890:+|nuORF ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS UPN47_class_I_Rep_2 3 465.73748779296875 2 465.737617 929.460681 0.0031393 1.4621E-06 -0.29709 -0.00013837 -0.29395 -0.00013691 465.7374675784364 49.974 0.64809 53.317 53.013 53.661 3.3431 63 36 2 0 0 0 0.82752 1 10925 10925 7.9102 3.1541 1 157560 11499 3881 7123 7129 14383 14383 -0.006870746536833394 HALYLAEN 8 Unmodified _HALYLAEN_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11;ENST00000534551.2_1_11:118947733-118948890:+|nuORF ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MATCH UPN47_class_I_Rep_1 2 2 465.737617 929.460681 -0.0606 -2.8224E-05 -0.12361 -5.7571E-05 -0.18421 -8.5794E-05 465.73751383527787 49.636 0.69212 53.296 53.051 53.744 3.6592 0.026843 0.00014979 NaN 7.9102 65 42 2 NaN NaN NaN NaN 0 NaN NaN 0 93230 11500 3881 7123 7129 -0.006870746536833394 HALYLAEN 8 Unmodified _HALYLAEN_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11;ENST00000534551.2_1_11:118947733-118948890:+|nuORF ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MATCH UPN47_class_I_Rep_3 4 2 465.737617 929.460681 -0.026986 -1.2568E-05 -0.39127 -0.00018223 -0.41825 -0.0001948 465.7373552723015 49.968 0.79279 53.194 52.99 53.782 3.2262 -0.074803 -9.9524E-05 NaN 7.9102 71 44 2 NaN NaN NaN NaN 0 NaN NaN 0 103100 11501 3881 7123 7129 -0.006870746536833394 HAMIWRVCI 9 Unmodified _HAMIWRVCI_ 0 0 0 LTR33_dup3349|chr6:25981004-25981398:-|1.6392303078266293|0.3568882487200197|2.2|151.0|7|2|sense LTR33_dup3349|chr6:25981004-25981398:-|1.6392303078266293|0.3568882487200197|2.2|151.0|7|2|sense LTR33_dup3349|chr6:25981004-25981398:-|1.6392303078266293|0.3568882487200197|2.2|151.0|7|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 564.7700805664062 2 564.793889 1127.57323 0.045844 2.5892E-05 -1.4132 -0.00079816 -1.3674 -0.00077227 564.7931429249455 34.527 0.17075 37.952 37.896 38.067 3.4253 18 12 2 0 0 0 0.12321 1 6249 6249 3.9444 1.6417 1 54128 11502 15621 7124 7130 14384 14384 0.014541595471655455 HAMIWRVCI 9 Unmodified _HAMIWRVCI_ 0 0 0 LTR33_dup3349|chr6:25981004-25981398:-|1.6392303078266293|0.3568882487200197|2.2|151.0|7|2|sense LTR33_dup3349|chr6:25981004-25981398:-|1.6392303078266293|0.3568882487200197|2.2|151.0|7|2|sense LTR33_dup3349|chr6:25981004-25981398:-|1.6392303078266293|0.3568882487200197|2.2|151.0|7|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 564.793889 1127.57323 -0.050761 -2.8669E-05 -1.8433 -0.0010411 -1.894 -0.0010697 564.7928905288903 34.154 0.37525 37.84 37.626 38.001 3.6859 -0.05607 -0.00031924 NaN 3.9444 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 90760 11503 15621 7124 7130 0.014541595471655455 HAMNKTYHY 9 Unmodified _HAMNKTYHY_ 0 0 0 L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|124|3|anti-sense L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|124|3|anti-sense L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|124|3|anti-sense MSMS UPN47_class_I_Rep_1 2 582.7664184570312 2 582.766383 1163.51821 NaN NaN NaN NaN NaN NaN NaN 113.79 1 117.36 116.86 117.86 3.572 0 0 0 0.39428 1 28094 28094 2.0598 0.21551 1 11504 11343 7125 7131 14385 14385 -0.057005557197499 HANEVYVLAA 10 Unmodified _HANEVYVLAA_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS UPN46_class_I_Rep_3 1 543.7827758789062 2 543.782556 1085.55056 0.32446 0.00017643 0.18797 0.00010221 0.51242 0.00027865 543.7825629512275 49.644 0.87021 49.644 49.275 50.145 0 201 93 3 0 0 0 0.51565 1 10541 10541 10.074 3.3508 1 1054900 + 11505 20546 7126 7132 14386 14386 0.011205549548776617 HANGATDSGEK 11 Unmodified _HANGATDSGEK_ 0 0 0 REV__ENSG00000147183|ENST00000276127|CPXCR1 REV__ENSG00000147183|ENST00000276127|CPXCR1 MSMS UPN48_class_I_Rep_3 7 543.7455444335938 2 543.744159 1085.47377 NaN NaN NaN NaN NaN NaN NaN 36.156 1 39.823 39.323 40.323 3.6667 0 0 0 0.38417 1 5950 5950 1.0715 0.27783 1 + 11506 19563 7127 7133 14387 14387 -0.06555288332242526 HANITTYIGP 10 Unmodified _HANITTYIGP_ 0 0 0 REV__ENST00000470452.5_1_2:237994547-238002319:+|nuORF REV__ENST00000470452.5_1_2:237994547-238002319:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 543.7823486328125 2 543.782556 1085.55056 0.21383 0.00011628 -0.0054587 -2.9684E-06 0.20837 0.00011331 543.7826467027404 45.035 2.5291 48.279 47.763 50.292 3.2441 412 158 3 0 0 0 0.54466 1 9957 9957 6.2058 0 1 8447000 + 11507 21133 7128 7134 14388 14388 0.011205549548776617 HANLFNRKY 9 Unmodified _HANLFNRKY_ 0 0 0 MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|27|2|sense;MER66-int_dup1|chr1:149683678-149685807:-|3.5901664453604702|0.4173679766776176|3.1|150.0|26|2|sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|27|2|sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|27|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 581.278564453125 2 581.809439 1161.60433 0.44726 0.00026022 -1.1167 -0.00064972 -0.66946 -0.0003895 581.8090034113858 50.284 0.49797 53.627 53.395 53.893 3.3431 33 24 2 0 0 0 0.12462 1 11059 11059 1.8442 0 1 81005 11508 16178 7129 7135 14389 14389 0.02998772177261344 HANLNIEYI 9 Unmodified _HANLNIEYI_ 0 0 0 REV__L1PREC2_dup23|chr1:29092556-29093625:-|1.5340008450453422|0.1703235426439339|3.17|150.0|22|2|sense REV__L1PREC2_dup23|chr1:29092556-29093625:-|1.5340008450453422|0.1703235426439339|3.17|150.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 543.7825317382812 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.43153 1 9842 9842 6.2058 0 1 7409700 + 11509 30698 7130 7136 14390 14390 0.01120554954900399 HANRKQWF 8 Unmodified _HANRKQWF_ 0 0 0 REV__ENST00000478336.5_1_1:228271057-228284925:+|nuORF REV__ENST00000478336.5_1_1:228271057-228284925:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 543.783203125 2 543.783225 1085.5519 0.35146 0.00019112 -1.633 -0.00088797 -1.2815 -0.00069685 543.7824670424635 48.938 0.24022 52.285 52.15 52.39 3.3465 27 17 2 0 0 0 0.82752 1 10603 10603 2.3027 0.4585 1 66623 + 11510 21609 7131 7137 14391 14391 0.012542338343109805 HANRKQWF 8 Unmodified _HANRKQWF_ 0 0 0 REV__ENST00000478336.5_1_1:228271057-228284925:+|nuORF REV__ENST00000478336.5_1_1:228271057-228284925:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 543.7825927734375 2 543.783225 1085.5519 0.36309 0.00019744 -0.98448 -0.00053535 -0.6214 -0.0003379 543.7826320428272 47.852 0.53787 51.093 51.03 51.568 3.2405 55 42 2 0 0 0 0.82752 1 10345 10345 4.756 0.81161 1 125570 + 11511 21609 7131 7137 14392 14392 0.012542338343109805 HAPASLGGLG 10 Unmodified _HAPASLGGLG_ 0 0 0 REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 439.8583068847656 2 440.237784 878.461016 -1.2202 -0.00053718 1.4866 0.00065446 0.2664 0.00011728 440.2384031665763 13.902 0.22678 17.271 17.186 17.413 3.3697 36 25 3 0 0 0 0.84575 1 455 455 0 0 1 39058 + 11512 21892 7132 7138 14393 14393 0.016923450662147843 HAPASLGGLG 10 Unmodified _HAPASLGGLG_ 0 0 0 REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 440.237784 878.461016 -0.4669 -0.00020555 0.68643 0.00030219 0.21952 9.6642E-05 440.23800725940447 13.807 0.24014 17.264 17.145 17.385 3.457 -0.070174 -0.00015776 NaN 0 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 31734 + 11513 21892 7132 7138 0.016923450662147843 HAPASLGGLG 10 Unmodified _HAPASLGGLG_ 0 0 0 REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 440.237784 878.461016 -0.68707 -0.00030248 0.82635 0.00036379 0.13928 6.1316E-05 440.23808713104853 13.877 0.26991 17.264 17.168 17.438 3.3871 -0.070051 -3.4558E-05 NaN 0 36 29 2 NaN NaN NaN NaN 0 NaN NaN 0 36552 + 11514 21892 7132 7138 0.016923450662147843 HAPASLGGLG 10 Unmodified _HAPASLGGLG_ 0 0 0 REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF REV__ENST00000359692.10_3_19:10942263-10942479:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 440.237784 878.461016 0.10546 4.6429E-05 0.64857 0.00028553 0.75403 0.00033195 440.23797567181924 14.022 0.13387 17.538 17.489 17.623 3.5156 0.20325 -0.00019109 NaN 0 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 18802 + 11515 21892 7132 7138 0.016923450662147843 HAPDLGPVSVE 11 Unmodified _HAPDLGPVSVE_ 0 0 0 REV__nc|ENSG00000168477|P22105-1|TNXB REV__nc|ENSG00000168477|P22105-1|TNXB MULTI-MSMS UPN47_class_I_Rep_2 3 560.78662109375 2 560.785296 1119.55604 0.44686 0.00025059 0.20203 0.0001133 0.64889 0.00036389 560.7853562599139 50.228 0.87732 53.571 53.19 54.068 3.3431 85 45 3 0 0 0 0.67264 1 11128 11128 1.1933 0.50296 1 142780 + 11516 20273 7133 7139 14394 14394 0.0010423374671972852 HAPHPTLHSP 10 Unmodified _HAPHPTLHSP_ 0 0 0 REV__THE1D_dup2666|chr3:195317906-195318264:+|1.6180556858697446|0.0486884372095468|5.05|151.0|20|1|anti-sense REV__THE1D_dup2666|chr3:195317906-195318264:+|1.6180556858697446|0.0486884372095468|5.05|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 547.281494140625 2 547.280515 1092.54648 NaN NaN NaN NaN NaN NaN NaN 51.143 1 54.36 53.86 54.86 3.2163 0 0 0 0.53105 1 11357 11357 1.4819 0.68827 1 + 11517 32297 7134 7140 14395 14395 0.003905102518501735 HAPPRWPD 8 Unmodified _HAPPRWPD_ 0 0 0 ENST00000260386.6_1_15:41795195-41795354:+|nuORF ENST00000260386.6_1_15:41795195-41795354:+|nuORF ENST00000260386.6_1_15:41795195-41795354:+|nuORF MSMS UPN47_class_I_Rep_2 3 488.2432861328125 2 488.243401 974.472249 NaN NaN NaN NaN NaN NaN NaN 39.981 1 43.352 42.852 43.852 3.3712 0 0 0 0.40738 1 7911 7911 0.79363 0 1 11518 5951 7135 7141 14396 14396 -0.016008328396878824 HAQCHHTPEL 10 Unmodified _HAQCHHTPEL_ 0 0 0 REV__ENST00000199764.6_1_19:42259386-42260556:+|nuORF REV__ENST00000199764.6_1_19:42259386-42260556:+|nuORF MSMS UPN47_class_I_Rep_2 3 586.7694702148438 2 586.766914 1171.51928 NaN NaN NaN NaN NaN NaN NaN 29.968 1 33.46 32.96 33.96 3.4923 0 0 0 0.53105 1 4874 4874 1.6526 1.0511 1 + 11519 21468 7136 7142 14397 14397 -0.059623413508461454 HAQFEYPIHR 10 Unmodified _HAQFEYPIHR_ 0 0 0 MN1|p.R1295Dfs*26|1|0.1|ENSG00000169184|chr22:27750995-27750996|-/TC|frameshift_variant;ENSG00000169184|ENST00000302326|MN1 MN1|p.R1295Dfs*26|1|0.1|ENSG00000169184|chr22:27750995-27750996|-/TC|frameshift_variant MN1|p.R1295Dfs*26|1|0.1|ENSG00000169184|chr22:27750995-27750996|-/TC|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_2 3 649.3242797851562 2 649.325454 1296.63635 0.40152 0.00026072 -1.039 -0.00067466 -0.6375 -0.00041395 649.3248343180993 64.131 0.37602 67.387 67.239 67.615 3.2556 48 29 2 0 0 0 0.84575 1 15304 15304 2.9952 1.151 1 128440 11520 4408 7137 7143 14398 14398 -9.86013960755372E-05 HARARPDMFC 10 Unmodified _HARARPDMFC_ 0 0 0 ENSG00000054938|ENST00000376332|CHRDL2;nc|ENSG00000054938|Q6WN34-2|CHRDL2 ENSG00000054938|ENST00000376332|CHRDL2 ENSG00000054938|ENST00000376332|CHRDL2 MSMS UPN48_class_I_Rep_2 6 602.2783203125 2 602.279134 1202.54372 NaN NaN NaN NaN NaN NaN NaN 83.083 1 86.764 86.264 87.264 3.6814 0 0 0 0.53105 1 19738 19738 0.40072 0 1 11521 936 7138 7144 14399 14399 -0.04945404468980996 HARELNYYE 9 Unmodified _HARELNYYE_ 0 0 0 REV__nc|ENSG00000075856|Q15020-4|SART3 REV__nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS UPN47_class_I_Rep_2 3 598.7540893554688 2 597.780544 1193.54654 0.045524 2.7213E-05 -0.080309 -4.8007E-05 -0.034785 -2.0794E-05 597.7805635771417 35.951 0.43647 39.363 39.149 39.586 3.4114 42 30 2 0 0 0 0.47197 1 6648 6648 3.5965 1.2938 1 66820 + 11522 17862 7139 7145 14400 14400 -0.042495345388033456 HARHQEYF 8 Unmodified _HARHQEYF_ 0 0 0 nc|ENSG00000135253|Q6ZWJ8-4|KCP;nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP MULTI-SECPEP UPN47_class_I_Rep_2 3 543.7808837890625 2 544.25704 1086.49953 0.33912 0.00018457 -1.6083 -0.00087531 -1.2691 -0.00069074 544.2561229561948 48.632 0.31744 51.979 51.815 52.132 3.3465 19 13 2 0 0 0 0.72333 1 10488 10488 5.2307 0.90143 1 50810 11523 2893 7140 7146 14401 14401 -0.040263492993062755 HARPVKAK 8 Unmodified _HARPVKAK_ 0 0 0 REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 453.78387451171875 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 50.511 1 54.14 53.64 54.64 3.6285 0 0 0 0.40746 1 11082 11082 0.69038 0 1 + 11524 32145 7141 7147 14402 14402 0.09936323328031449 HARPVKAK 8 Unmodified _HARPVKAK_ 0 0 0 REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 453.7831115722656 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 50.74 1 54.368 53.868 54.868 3.6285 0 0 0 0.40746 1 11152 11152 0.69038 0 1 + 11525 32145 7141 7147 14403 14403 0.09936323328031449 HARPVKAK 8 Unmodified _HARPVKAK_ 0 0 0 REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 453.7850036621094 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 51.216 1 54.809 54.309 55.309 3.5932 0 0 0 0.40746 1 11298 11298 0.69038 0 1 + 11526 32145 7141 7147 14404 14404 0.09936323328031449 HARPVKAK 8 Unmodified _HARPVKAK_ 0 0 0 REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense REV__ORSL_dup482|chr7:37078035-37078296:+|1.293623728641526|0.0189760802418636|6.09|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 453.7851867675781 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 53.979 1 57.507 57.007 58.007 3.5278 0 0 0 0.40746 1 12139 12139 0.69038 0 1 + 11527 32145 7141 7147 14405 14405 0.09936323328031449 HARQHKLFYP 10 Unmodified _HARQHKLFYP_ 0 0 0 REV__ENSG00000198393|ENST00000328654|ZNF26 REV__ENSG00000198393|ENST00000328654|ZNF26 MSMS UPN47_class_I_Rep_3 4 648.8534545898438 2 648.851638 1295.68872 NaN NaN NaN NaN NaN NaN NaN 70.096 1 73.307 72.807 73.807 3.2113 0 0 0 0.53105 1 17128 17128 1.4819 0.15237 1 + 11528 21124 7142 7148 14406 14406 0.052707229940324396 HARYVPKV 8 Unmodified _HARYVPKV_ 0 0 0 L1MC4_dup5272|chr3:142528162-142528854:-|1.118673342909177|0.0395040881382695|4.82|151.0|21|3|sense L1MC4_dup5272|chr3:142528162-142528854:-|1.118673342909177|0.0395040881382695|4.82|151.0|21|3|sense L1MC4_dup5272|chr3:142528162-142528854:-|1.118673342909177|0.0395040881382695|4.82|151.0|21|3|sense MSMS UPN48_class_I_Rep_1 5 485.2849426269531 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 33.086 1 36.613 36.113 37.113 3.5266 0 0 0 0.40738 1 5115 5115 0.79363 0 1 11529 11503 7143 7149 14407 14407 0.07004903608174118 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS UPN46_class_I_Rep_3 1 498.2849426269531 2 498.285266 994.555979 0.28653 0.00014277 -0.24187 -0.00012052 0.04466 2.2253E-05 498.2851273187852 43.606 0.56189 43.606 43.358 43.92 0 119 54 3 0 0 0 0.095207 1 8758 8758 34.932 14.518 1 518150 11530 4058 7144 7150 14408 14408 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS UPN47_class_I_Rep_1 2 498.28485107421875 2 498.285266 994.555979 -0.24785 -0.0001235 -0.12165 -6.0617E-05 -0.3695 -0.00018412 498.2850590275732 37.639 0.88326 41.304 40.897 41.78 3.6652 101 64 2 0 0 0 0.32682 1 7088 7088 12.241 1.4167 1 159460 11531 4058 7144 7150 14409 14409 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MSMS UPN48_class_I_Rep_1 5 498.2840270996094 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 38.375 1 41.88 41.38 42.38 3.5052 0 0 0 0.34878 1 6641 6641 8.1555 0.54658 1 11532 4058 7144 7150 14410 14410 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS UPN48_class_I_Rep_3 7 498.2854919433594 2 498.285266 994.555979 0.16523 8.2333E-05 -0.33118 -0.00016502 -0.16595 -8.2689E-05 498.2850723021722 38.288 0.43798 41.948 41.726 42.164 3.6595 55 41 2 0 0 0 0.279 3 6549 6510;6549;6586 15.248 3.7538 1 100610 11533 4058 7144 7150 14411;14412;14413 14412 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MSMS UPN48_class_I_Rep_3 7 498.2855529785156 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 38.519 1 42.178 41.678 42.678 3.6595 0 0 0 0.3377 1 6629 6629 8.7454 1.4562 1 11534 4058 7144 7150 14414 14414 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MATCH UPN47_class_I_Rep_2 3 2 498.285266 994.555979 -0.16292 -8.1178E-05 3.2746 0.0016317 3.1117 0.0015505 498.2882284348752 37.531 0.027603 40.93 40.91 40.937 3.3988 -0.18724 0.0033786 NaN 12.241 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 15979 11535 4058 7144 7150 0.058482785373598745 HASFLSFVHV 10 Unmodified _HASFLSFVHV_ 0 0 0 REV__L1PA11_dup3694|chr16:23960460-23960728:-|1.3315789136833178|0.0041741683128012|8.32|150.0|20|2|anti-sense REV__L1PA11_dup3694|chr16:23960460-23960728:-|1.3315789136833178|0.0041741683128012|8.32|150.0|20|2|anti-sense MSMS UPN48_class_I_Rep_2 6 572.3006591796875 2 572.300916 1142.58728 NaN NaN NaN NaN NaN NaN NaN 39.851 1 43.593 43.093 44.093 3.7413 0 0 0 0.53105 1 7115 7115 3.2813 0 1 + 11536 29032 7145 7151 14415 14415 0.02168851571468622 HASPSTQFAES 11 Unmodified _HASPSTQFAES_ 0 0 0 REV__MLT1H1_dup2582|chr12:57485716-57486087:-|2.032368619317302|0.12457786367042|4.03|151.0|8|2|sense REV__MLT1H1_dup2582|chr12:57485716-57486087:-|2.032368619317302|0.12457786367042|4.03|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 581.2630004882812 2 581.262185 1160.50982 NaN NaN NaN NaN NaN NaN NaN 31.814 1 35.113 34.613 35.613 3.2991 0 0 0 0.38417 1 5471 5471 1.0715 0.38109 1 + 11537 31757 7146 7152 14416 14416 -0.06401831155380933 HASQRAEHARS 11 Unmodified _HASQRAEHARS_ 0 0 0 nc|ENSG00000215568|Q2WGN9|GAB4 nc|ENSG00000215568|Q2WGN9|GAB4 nc|ENSG00000215568|Q2WGN9|GAB4 MSMS UPN48_class_I_Rep_1 5 625.3080444335938 2 625.310866 1248.60718 NaN NaN NaN NaN NaN NaN NaN 62.446 1 65.908 65.408 66.408 3.4625 0 0 0 0.38417 1 13976 13976 0.96228 0.36078 1 11538 16826 7147 7153 14417 14417 -0.007180044358847226 HASVPGTQCLC 11 Unmodified _HASVPGTQCLC_ 0 0 0 L1M2a_dup296|chr11:47304530-47306850:-|1.8650931216929945|0.0463526041798089|5.33|151.0|42|2|sense L1M2a_dup296|chr11:47304530-47306850:-|1.8650931216929945|0.0463526041798089|5.33|151.0|42|2|sense L1M2a_dup296|chr11:47304530-47306850:-|1.8650931216929945|0.0463526041798089|5.33|151.0|42|2|sense MSMS UPN47_class_I_Rep_1 2 558.249755859375 2 558.252251 1114.48995 NaN NaN NaN NaN NaN NaN NaN 30.194 1 33.939 33.439 34.439 3.7449 0 0 0 0.38417 1 4904 4904 1.3295 0.5359 1 11539 8732 7148 7154 14418 14418 -0.06271621691348628 HATPWFSNQ 9 Unmodified _HATPWFSNQ_ 0 0 0 REV__MLT1F2_dup2569|chr7:76599784-76600323:-|2.102739952695819|0.1627431020498181|3.69|151.0|5|1|sense REV__MLT1F2_dup2569|chr7:76599784-76600323:-|2.102739952695819|0.1627431020498181|3.69|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.2510375976562 2 544.251423 1086.48829 0.077837 4.2363E-05 -1.5451 -0.00084094 -1.4673 -0.00079858 544.2503969282652 42.599 0.53523 45.838 45.55 46.085 3.2394 57 35 2 0 0 0 0.46869 1 8707 8707 3.9444 0.3479 1 94607 + 11540 31716 7149 7155 14419 14419 -0.051491713934410654 HAVGPSTSL 9 Unmodified _HAVGPSTSL_ 0 0 0 nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12 nc|ENSG00000140262|Q99081-4|TCF12 nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MSMS UPN46_class_I_Rep_3 1 434.72943115234375 2 434.729792 867.445031 -0.038389 -1.6689E-05 0.13216 5.7453E-05 0.09377 4.0764E-05 434.7296560424924 33.36 0.65587 33.36 33.159 33.815 0 79 53 2 0 0 0 0.18929 1 5866 5866 21.747 4.8044 1 124400 11541 3164 7150 7156 14420 14420 0.006006388292917109 HAVMLLSSSL 10 Unmodified _HAVMLLSSSL_ 0 0 0 L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|116|3|anti-sense L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|116|3|anti-sense L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|116|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.2893676757812 2 529.289159 1056.56377 0.36574 0.00019358 0.67923 0.00035951 1.045 0.00055309 529.2894057336955 64.709 0.37099 67.889 67.785 68.156 3.1795 60 30 3 0 0 0 0.51003 1 15514 15514 10.824 1.4408 1 150740 11542 12228 7151 7157 14421 14421 0.03774669742665537 HAVMLLSSSL 10 Unmodified _HAVMLLSSSL_ 0 0 0 L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|116|3|anti-sense L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|116|3|anti-sense L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|116|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 528.7532348632812 2 529.289159 1056.56377 0.366 0.00019372 0.54343 0.00028763 0.90943 0.00048135 529.2895092450698 65.049 0.19378 68.228 68.167 68.361 3.1795 23 14 2 0 0 0 0.84575 1 15594 15594 7.2892 0.93513 1 65303 11543 12228 7151 7157 14422 14422 0.03774669742665537 HAVSPIAKYY 10 Unmodified _HAVSPIAKYY_ 0 0 0 ENST00000562717.1_1_16:50257250-50268886:+|nuORF;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B ENST00000562717.1_1_16:50257250-50268886:+|nuORF ENST00000562717.1_1_16:50257250-50268886:+|nuORF MSMS UPN48_class_I_Rep_1 5 574.6791381835938 2 574.808574 1147.60259 NaN NaN NaN NaN NaN NaN NaN 52.388 1 55.911 55.411 56.411 3.5227 0 0 0 0.53105 1 10890 10890 2.7352 1.2533 1 11544 2352 7152 7158 14423 14423 0.034697183686375865 HAVTQDGLFS 10 Unmodified _HAVTQDGLFS_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13;ENST00000471925.1_1_3:132175145-132176248:+|nuORF ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MULTI-SECPEP UPN47_class_I_Rep_2 3 538.2998046875 2 537.764363 1073.51417 -0.01021 -5.4903E-06 -0.61757 -0.00033211 -0.62778 -0.0003376 537.7639848021962 34.17 0.75466 37.61 37.211 37.966 3.4398 64 49 2 0 0 0 0.84575 1 6110 6110 2.9952 0 1 117770 11545 3075 7153 7159 14424 14424 -0.019643219418185254 HAVWVTVAL 9 Unmodified _HAVWVTVAL_ 0 0 0 L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense;L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|105|2|anti-sense;L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|94|1|anti-sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|158|1|anti-sense;L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|65|1|anti-sense;L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|80|1|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense MSMS UPN46_class_I_Rep_3 1 498.2847900390625 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 43.969 1 43.969 43.469 44.469 0 0 0 0 0.2088 1 8821 8821 15.847 0 1 11546 14042 7154 7160 14425 14425 0.06250368031078324 HAVWVTVAL 9 Unmodified _HAVWVTVAL_ 0 0 0 L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense;L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|105|2|anti-sense;L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|94|1|anti-sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|158|1|anti-sense;L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|65|1|anti-sense;L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|80|1|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense MSMS UPN48_class_I_Rep_1 5 498.28558349609375 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 38.506 1 42.011 41.511 42.511 3.5048 0 0 0 0.29868 1 6681 6681 10.824 0 1 11547 14042 7154 7160 14426 14426 0.06250368031078324 HAVWVTVAL 9 Unmodified _HAVWVTVAL_ 0 0 0 L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense;L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|105|2|anti-sense;L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|94|1|anti-sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|158|1|anti-sense;L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|65|1|anti-sense;L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|80|1|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense MSMS UPN48_class_I_Rep_1 5 498.28424072265625 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 38.664 1 42.169 41.669 42.669 3.5048 0 0 0 0.29868 1 6729 6729 10.824 0 1 11548 14042 7154 7160 14427 14427 0.06250368031078324 HAVWVTVAL 9 Unmodified _HAVWVTVAL_ 0 0 0 L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense;L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|105|2|anti-sense;L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|94|1|anti-sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|158|1|anti-sense;L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|65|1|anti-sense;L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|80|1|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense MSMS UPN48_class_I_Rep_2 6 498.2856140136719 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 38.119 1 41.836 41.336 42.336 3.7164 0 0 0 0.2088 1 6604 6604 15.847 0 1 11549 14042 7154 7160 14428 14428 0.06250368031078324 HAVWVTVAL 9 Unmodified _HAVWVTVAL_ 0 0 0 L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense;L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|105|2|anti-sense;L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|94|1|anti-sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|158|1|anti-sense;L1PA16_dup7211|chr8:127902429-127904173:-|4.249211609105542|0.0398404378908344|6.74|151.0|65|1|anti-sense;L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|80|1|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|325|3|anti-sense MSMS UPN48_class_I_Rep_2 6 498.2851257324219 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 38.288 1 42.005 41.505 42.505 3.7164 0 0 0 0.28335 1 6654 6654 11.64 0 1 11550 14042 7154 7160 14429 14429 0.06250368031078324 HAWAKWTFS 9 Unmodified _HAWAKWTFS_ 0 0 0 REV__L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|194|1|anti-sense REV__L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|194|1|anti-sense MSMS UPN48_class_I_Rep_1 5 567.261474609375 2 567.279983 1132.54541 NaN NaN NaN NaN NaN NaN NaN 71.986 1 75.459 74.959 75.959 3.4732 0 0 0 0.39598 1 16868 16868 1.6526 0 1 + 11551 26583 7155 7161 14430 14430 -0.015557041170495722 HAWFSWLH 8 Unmodified _HAWFSWLH_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MSMS UPN47_class_I_Rep_2 3 542.260498046875 2 542.261594 1082.50863 NaN NaN NaN NaN NaN NaN NaN 36.765 1 40.164 39.664 40.664 3.3988 0 0 0 0.40738 1 6935 6935 0.79363 0.10326 1 11552 2120 7156 7162 14431 14431 -0.029319559429723085 HAWLIYFYF 9 Unmodified _HAWLIYFYF_ 0 0 0 AluJo_dup69640|chr19:4905989-4906277:-|1.3167646302974811|0.0241682402196418|5.77|151.0|16|2|anti-sense;AluJo_dup1526|chr1:29059495-29059785:+|1.214515114836795|0.0588035456194341|4.37|151.0|13|1|anti-sense AluJo_dup69640|chr19:4905989-4906277:-|1.3167646302974811|0.0241682402196418|5.77|151.0|16|2|anti-sense AluJo_dup69640|chr19:4905989-4906277:-|1.3167646302974811|0.0241682402196418|5.77|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_2 6 630.3180541992188 2 630.316035 1258.61752 NaN NaN NaN NaN NaN NaN NaN 64.667 1 68.146 67.646 68.646 3.4792 0 0 0 0.39326 1 14638 14638 2.3027 0.65011 1 11553 89 7157 7163 14432 14432 -0.001447897633397588 HAYLNRCRK 9 Unmodified _HAYLNRCRK_ 0 0 0 L1PA6_dup3227|chr8:125196204-125202353:-|6.844946527729751|0.1627551044092786|5.39|151.0|103|2|sense;L1PA5_dup7585|chr10:11972383-11974769:-|4.84180013816909|0.1038155295182227|5.54|151.0|19|2|sense;L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|171|3|sense L1PA6_dup3227|chr8:125196204-125202353:-|6.844946527729751|0.1627551044092786|5.39|151.0|103|2|sense L1PA6_dup3227|chr8:125196204-125202353:-|6.844946527729751|0.1627551044092786|5.39|151.0|103|2|sense MSMS UPN48_class_I_Rep_1 5 580.8082275390625 2 580.808916 1159.60328 NaN NaN NaN NaN NaN NaN NaN 46.653 1 50.173 49.673 50.673 3.5192 0 0 0 0.39518 1 9133 9133 1.8442 0 1 11554 14438 7158 7164 14433 14433 0.029862345367064336 HAYPDDAKSE 10 Unmodified _HAYPDDAKSE_ 0 0 0 REV__ENSG00000204574|ENST00000326195|ABCF1 REV__ENSG00000204574|ENST00000326195|ABCF1 MSMS UPN47_class_I_Rep_2 3 566.7505493164062 2 566.74891 1131.48327 NaN NaN NaN NaN NaN NaN NaN 24.117 1 27.582 27.082 28.082 3.4655 0 0 0 0.53105 1 3146 3146 3.9444 1.2092 1 + 11555 21200 7159 7165 14434 14434 -0.0772152004669806 HAYPVMQFGN 10 Unmodified _HAYPVMQFGN_ 0 0 0 nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 MULTI-SECPEP UPN47_class_I_Rep_1 2 582.2703247070312 2 582.268758 1162.52296 0.22044 0.00012836 1.4104 0.00082121 1.6308 0.00094956 582.2696137927057 49.6 0.46461 53.26 53.082 53.546 3.6592 48 27 2 0 0 0 0.84575 1 10830 10830 10.074 2.1638 1 106930 11556 1634 7160 7166 14435 14435 -0.051796715769569346 HAYSGALWAHS 11 Unmodified _HAYSGALWAHS_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|4|1|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 600.28076171875 2 600.283254 1198.55196 NaN NaN NaN NaN NaN NaN NaN 80.692 1 84.062 83.562 84.562 3.3694 0 0 0 0.38417 1 20090 20090 2.9952 0.93549 1 + 11557 29950 7161 7167 14436 14436 -0.03937810956335852 HAYVHKVASQM 11 Unmodified _HAYVHKVASQM_ 0 0 0 nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A nc|ENSG00000185585|Q68BL7-2|OLFML2A nc|ENSG00000185585|Q68BL7-2|OLFML2A MSMS UPN48_class_I_Rep_3 7 635.8218383789062 2 635.821689 1269.62883 NaN NaN NaN NaN NaN NaN NaN 57.487 1 61.018 60.518 61.518 3.5317 0 0 0 0.38417 1 12370 12370 2.9952 0 1 11558 5109 7162 7168 14437 14437 0.004796642684823382 HCAAMGPD 8 Unmodified _HCAAMGPD_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MSMS UPN48_class_I_Rep_1 5 401.15350341796875 2 401.154548 800.294544 NaN NaN NaN NaN NaN NaN NaN 92.866 1 96.49 95.99 96.99 3.624 0 0 0 0.40364 1 22316 22316 5.7604 3.1829 1 + 11559 19667 7163 7169 14438 14438 -0.1135916742551899 HCCCCCFWCF 10 Unmodified _HCCCCCFWCF_ 0 0 0 ENST00000316660.6_1_18:57570359-57570470:+|nuORF ENST00000316660.6_1_18:57570359-57570470:+|nuORF ENST00000316660.6_1_18:57570359-57570470:+|nuORF MSMS UPN46_class_I_Rep_3 1 627.677734375 2 627.677639 1253.34072 NaN NaN NaN NaN NaN NaN NaN 56.734 1 56.734 56.234 57.234 0 0 0 0 0.53105 1 12391 12391 0 0 1 11560 6138 7164 7170 14439 14439 -0.2758125317325266 HCCCCGRQ 8 Unmodified _HCCCCGRQ_ 0 0 0 ENST00000481964.5_1_20:31981865-31989268:-|nuORF ENST00000481964.5_1_20:31981865-31989268:-|nuORF ENST00000481964.5_1_20:31981865-31989268:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 455.1510314941406 2 455.15096 908.287367 0.17586 8.0041E-05 0.092754 4.2217E-05 0.26861 0.00012226 455.1509770138764 59.749 0.47256 63.229 63.036 63.509 3.4801 47 36 2 0 0 0 0.82752 1 13178 13178 0 0 1 66713 11561 7003 7165 7171 14440 14440 -0.17044546569240993 HCCCCGRQ 8 Unmodified _HCCCCGRQ_ 0 0 0 ENST00000481964.5_1_20:31981865-31989268:-|nuORF ENST00000481964.5_1_20:31981865-31989268:-|nuORF ENST00000481964.5_1_20:31981865-31989268:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 455.6526794433594 2 455.15096 908.287367 0.24285 0.00011053 0.20788 9.4615E-05 0.45073 0.00020515 455.1510158825796 59.726 0.4515 63.213 62.927 63.379 3.4868 45 33 2 0 0 0 0.82752 2 13088 13088;13138 0 0 1 106780 11562 7003 7165 7171 14441;14442 14441 -0.17044546569240993 HCCCCGRQ 8 Unmodified _HCCCCGRQ_ 0 0 0 ENST00000481964.5_1_20:31981865-31989268:-|nuORF ENST00000481964.5_1_20:31981865-31989268:-|nuORF ENST00000481964.5_1_20:31981865-31989268:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 455.1511535644531 2 455.15096 908.287367 0.14677 6.6803E-05 0.057323 2.6091E-05 0.20409 9.2893E-05 455.1509321698815 59.593 0.4342 63.11 62.888 63.322 3.5169 45 33 2 0 0 0 0.82752 1 13037 13037 0 0 1 102080 11563 7003 7165 7171 14443 14443 -0.17044546569240993 HCCCCTGCGG 10 Unmodified _HCCCCTGCGG_ 0 0 0 REV__L1MD2_dup9979|chr19:16559690-16560580:-|2.008191544278124|0.3087632949668463|2.7|151.0|43|1|anti-sense REV__L1MD2_dup9979|chr19:16559690-16560580:-|2.008191544278124|0.3087632949668463|2.7|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 472.2871398925781 2 472.121011 942.227469 NaN NaN NaN NaN NaN NaN NaN 88.78 1 92.436 91.936 92.936 3.6563 0 0 0 0.53105 1 22201 22201 0 0 1 + 11564 27465 7166 7172 14444 14444 -0.24595605294791767 HCCGSLPSPY 10 Unmodified _HCCGSLPSPY_ 0 0 0 ENST00000547992.5_1_12:58138858-58140853:+|nuORF;ENST00000257910.7_1_12:58138858-58140023:+|nuORF ENST00000547992.5_1_12:58138858-58140853:+|nuORF ENST00000547992.5_1_12:58138858-58140853:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 532.2205810546875 2 532.22042 1062.42629 0.43478 0.0002314 -0.19371 -0.0001031 0.24107 0.0001283 532.2203226061133 46.597 0.56696 50.233 49.99 50.557 3.6363 45 34 2 0 0 0 0.56033 1 9109 9109 3.5965 3.5965 1 169550 11565 5934 7167 7173 14445 14445 -0.10242982128420408 HCCGSLPSPY 10 Unmodified _HCCGSLPSPY_ 0 0 0 ENST00000547992.5_1_12:58138858-58140853:+|nuORF;ENST00000257910.7_1_12:58138858-58140023:+|nuORF ENST00000547992.5_1_12:58138858-58140853:+|nuORF ENST00000547992.5_1_12:58138858-58140853:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 532.22042 1062.42629 0.33888 0.00018036 -0.27766 -0.00014778 0.061217 3.2581E-05 532.2202516331195 46.374 0.61175 50.124 49.884 50.496 3.7494 -0.079813 -5.9377E-05 NaN 3.5965 53 38 2 NaN NaN NaN NaN 0 NaN NaN 0 119660 11566 5934 7167 7173 -0.10242982128420408 HCCRRRGCHQ 10 Unmodified _HCCRRRGCHQ_ 0 0 0 ENST00000585026.1_1_17:80223629-80224623:-|nuORF ENST00000585026.1_1_17:80223629-80224623:-|nuORF ENST00000585026.1_1_17:80223629-80224623:-|nuORF MSMS UPN47_class_I_Rep_1 2 628.2779541015625 2 628.276935 1254.53932 NaN NaN NaN NaN NaN NaN NaN 53.805 1 57.333 56.833 57.833 3.5278 0 0 0 0.53105 1 12085 12085 1.4819 0.8804 1 11567 7575 7168 7174 14446 14446 -0.07777192163530344 HCDEHFVRPC 10 Unmodified _HCDEHFVRPC_ 0 0 0 REV__ENST00000477068.1_1_2:231033842-231037687:-|nuORF REV__ENST00000477068.1_1_2:231033842-231037687:-|nuORF MSMS UPN48_class_I_Rep_3 7 621.760986328125 2 621.760775 1241.507 NaN NaN NaN NaN NaN NaN NaN 111.73 1 115.39 114.89 115.89 3.6614 0 0 0 0.53105 1 26529 26529 1.6526 0.96225 1 + 11568 19160 7169 7175 14447 14447 -0.10409701085518464 HCECYTECLD 10 Unmodified _HCECYTECLD_ 0 0 0 L1ME2z_dup1580|chr4:42050654-42051766:+|1.6526953607635204|0.2219664303624296|2.9|151.0|79|3|anti-sense L1ME2z_dup1580|chr4:42050654-42051766:+|1.6526953607635204|0.2219664303624296|2.9|151.0|79|3|anti-sense L1ME2z_dup1580|chr4:42050654-42051766:+|1.6526953607635204|0.2219664303624296|2.9|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_3 4 607.8859252929688 2 608.209392 1214.40423 NaN NaN NaN NaN NaN NaN NaN 89.478 1 92.871 92.371 93.371 3.3931 0 0 0 0.53105 1 22435 22435 0.40072 0 1 11569 12552 7170 7176 14448 14448 -0.19439574659168102 HCEECFWFF 9 Unmodified _HCEECFWFF_ 0 0 0 REV__L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|156|1|anti-sense REV__L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|156|1|anti-sense MSMS UPN47_class_I_Rep_2 3 624.3728637695312 2 624.23607 1246.45759 NaN NaN NaN NaN NaN NaN NaN 92.326 1 95.791 95.291 96.291 3.4652 0 0 0 0.40038 1 22828 22828 0.6015 0 1 + 11570 30704 7171 7177 14449 14449 -0.15578409094359813 HCFANRPHF 9 Unmodified _HCFANRPHF_ 0 0 0 L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|36|2|anti-sense L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|36|2|anti-sense L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|36|2|anti-sense MSMS UPN47_class_I_Rep_1 2 564.7601928710938 2 564.761435 1127.50832 NaN NaN NaN NaN NaN NaN NaN 32.693 1 36.406 35.906 36.906 3.7131 0 0 0 0.38478 1 5659 5659 4.3292 0.38484 1 11571 13337 7172 7178 14450 14450 -0.05033698934471431 HCFFLLNLL 9 Unmodified _HCFFLLNLL_ 0 0 0 L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|80|1|anti-sense L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|80|1|anti-sense L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|80|1|anti-sense MSMS UPN48_class_I_Rep_1 5 560.3067626953125 2 560.304613 1118.59467 NaN NaN NaN NaN NaN NaN NaN 82.13 1 85.705 85.205 86.205 3.5753 0 0 0 0.28335 1 19605 19605 11.64 0 1 11572 14065 7173 7179 14451 14451 0.040118678475437264 HCFLKTKMNL 10 Unmodified _HCFLKTKMNL_ 0 0 0 REV__ENST00000520073.5_1_8:37620150-37623956:+|nuORF REV__ENST00000520073.5_1_8:37620150-37623956:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 617.8289184570312 2 617.825386 1233.63622 0.45044 0.00027829 1.4209 0.00087786 1.8713 0.0011562 617.8261796015324 69.438 0.3001 72.643 72.417 72.717 3.2044 37 24 2 0 0 0 0.56309 1 16941 16941 1.6526 0.17072 1 60111 + 11573 22778 7174 7180 14452 14452 0.028746805445734935 HCHMNHSSPF 10 Unmodified _HCHMNHSSPF_ 0 0 0 L1MC3_dup5844|chr7:150225047-150226423:-|1.128684176498378|0.473835464988768|1.25|151.0|81|3|anti-sense L1MC3_dup5844|chr7:150225047-150226423:-|1.128684176498378|0.473835464988768|1.25|151.0|81|3|anti-sense L1MC3_dup5844|chr7:150225047-150226423:-|1.128684176498378|0.473835464988768|1.25|151.0|81|3|anti-sense MSMS UPN48_class_I_Rep_3 7 598.7410888671875 2 598.739842 1195.46513 NaN NaN NaN NaN NaN NaN NaN 52.866 1 56.464 55.964 56.964 3.5979 0 0 0 0.53105 1 10960 10960 1.3295 0.5359 1 11574 11358 7175 7181 14453 14453 -0.12478256774056717 HCHREADY 8 Unmodified _HCHREADY_ 0 0 0 REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35 REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35 MSMS UPN47_class_I_Rep_2 3 515.7092895507812 2 515.711608 1029.40866 NaN NaN NaN NaN NaN NaN NaN 22.131 1 25.555 25.055 26.055 3.4241 0 0 0 0.40643 1 2578 2578 2.0598 0.21551 1 + 11575 18252 7176 7182 14454 14454 -0.10486561339098444 HCHYVILSF 9 Unmodified _HCHYVILSF_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|429|3|anti-sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|429|3|anti-sense MSMS UPN47_class_I_Rep_1 2 559.7774658203125 2 559.776219 1117.53789 NaN NaN NaN NaN NaN NaN NaN 46.338 1 50.038 49.538 50.538 3.6999 0 0 0 0.39428 1 9819 9819 2.0598 0.57785 1 + 11576 25369 7177 7183 14455 14455 -0.016181797089984684 HCIHVNIYY 9 Unmodified _HCIHVNIYY_ 0 0 0 L1PB1_dup357|chr1:107869654-107870642:-|1.2117612063933096|0.0289600291942765|5.39|151.0|53|2|anti-sense L1PB1_dup357|chr1:107869654-107870642:-|1.2117612063933096|0.0289600291942765|5.39|151.0|53|2|anti-sense L1PB1_dup357|chr1:107869654-107870642:-|1.2117612063933096|0.0289600291942765|5.39|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_3 4 581.2777709960938 2 581.279126 1160.5437 NaN NaN NaN NaN NaN NaN NaN 48.908 1 52.142 51.642 52.642 3.2345 0 0 0 0.39428 1 10675 10675 2.0598 0 1 11577 15092 7178 7184 14456 14456 -0.03015081197327163 HCIKKIPAPI 10 Unmodified _HCIKKIPAPI_ 0 0 0 L1PB4_dup5758|chr12:116672664-116673277:-|2.311009181005081|0.0167986011119937|7.1|140.0|16|3|sense L1PB4_dup5758|chr12:116672664-116673277:-|2.311009181005081|0.0167986011119937|7.1|140.0|16|3|sense L1PB4_dup5758|chr12:116672664-116673277:-|2.311009181005081|0.0167986011119937|7.1|140.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 560.3403930664062 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 98.163 1 101.93 101.43 102.43 3.7707 0 0 0 0.53105 1 23321 23321 1.6526 0 1 11578 15327 7179 7185 14457 14457 0.10883532147249753 HCKFLFVR 8 Unmodified _HCKFLFVR_ 0 0 0 ENST00000373344.9_1_X:76940479-76944390:-|nuORF ENST00000373344.9_1_X:76940479-76944390:-|nuORF ENST00000373344.9_1_X:76940479-76944390:-|nuORF MSMS UPN47_class_I_Rep_2 3 525.2894287109375 2 525.289297 1048.56404 NaN NaN NaN NaN NaN NaN NaN 26.187 1 29.681 29.181 30.181 3.4945 0 0 0 0.40746 1 3751 3751 0.69038 0 1 11579 6412 7180 7186 14458 14458 0.041701342531496266 HCKLLHFQF 9 Unmodified _HCKLLHFQF_ 0 0 0 HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|51|2|anti-sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|51|2|anti-sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_3 7 586.8062133789062 2 586.805311 1171.59607 NaN NaN NaN NaN NaN NaN NaN 64.737 1 68.246 67.746 68.746 3.5083 0 0 0 0.38639 1 14574 14574 3.9444 0 1 11580 7854 7181 7187 14459 14459 0.017135019362740422 HCLCCCCCY 9 Unmodified _HCLCCCCCY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|230|2|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|230|2|anti-sense MSMS UPN46_class_I_Rep_3 1 525.6419067382812 2 525.643264 1049.27198 NaN NaN NaN NaN NaN NaN NaN 46.521 1 46.521 46.021 47.021 0 0 0 0 0.40038 1 9545 9545 0.6015 0.6015 1 + 11581 25729 7182 7188 14460 14460 -0.2506891747298141 HCLKKKHA 8 Unmodified _HCLKKKHA_ 0 0 0 ENSG00000174175|ENST00000263686|SELP ENSG00000174175|ENST00000263686|SELP ENSG00000174175|ENST00000263686|SELP MSMS UPN46_class_I_Rep_3 1 482.373046875 2 482.779096 963.54364 NaN NaN NaN NaN NaN NaN NaN 67.399 1 67.399 66.899 67.899 0 0 0 0 0.40746 1 15343 15343 0.69038 0.69038 1 11582 4668 7183 7189 14461 14461 0.060409635933410755 HCLLCSNLNFL 11 Unmodified _HCLLCSNLNFL_ 0 0 0 L1MB2_dup2976|chr6:88615857-88616990:-|1.28440272704387|0.2634758674174105|2.29|151.0|60|1|anti-sense L1MB2_dup2976|chr6:88615857-88616990:-|1.28440272704387|0.2634758674174105|2.29|151.0|60|1|anti-sense L1MB2_dup2976|chr6:88615857-88616990:-|1.28440272704387|0.2634758674174105|2.29|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 638.8151245117188 2 638.812476 1275.6104 NaN NaN NaN NaN NaN NaN NaN 78.994 1 82.529 82.029 83.029 3.5352 0 0 0 0.38417 1 18842 18842 3.2813 0.78282 1 11583 10230 7184 7190 14462 14462 -0.01638213697719948 HCLRDNIW 8 Unmodified _HCLRDNIW_ 0 0 0 THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|55|1|anti-sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|55|1|anti-sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_1 2 528.7538452148438 2 528.755818 1055.49708 NaN NaN NaN NaN NaN NaN NaN 59.168 1 62.585 62.085 63.085 3.4171 0 0 0 0.40501 1 13718 13718 3.9444 0.66309 1 11584 32920 7185 7191 14463 14463 -0.02844521028600866 HCLSEMYFF 9 Unmodified _HCLSEMYFF_ 0 0 0 REV__AluSz_dup96784|chr19:53870949-53871249:+|1.3766100826148882|0.1212020133046481|3.51|151.0|11|1|anti-sense REV__AluSz_dup96784|chr19:53870949-53871249:+|1.3766100826148882|0.1212020133046481|3.51|151.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 588.7461547851562 2 588.74627 1175.47799 0.41452 0.00024405 0.013275 7.8155E-06 0.4278 0.00025187 588.7458229380904 79.131 1.0087 82.577 82.155 83.163 3.4456 237 92 3 0 0 0 0.12799 3 19764 19764;19806;19872 28.487 2.3393 1 1105900 + 11585 17220 7186 7192 14464;14465;14466 14464 -0.10273238434524501 HCLSEMYFF 9 Unmodified _HCLSEMYFF_ 0 0 0 REV__AluSz_dup96784|chr19:53870949-53871249:+|1.3766100826148882|0.1212020133046481|3.51|151.0|11|1|anti-sense REV__AluSz_dup96784|chr19:53870949-53871249:+|1.3766100826148882|0.1212020133046481|3.51|151.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.74609375 2 588.74627 1175.47799 0.47105 0.00027733 -0.39936 -0.00023512 0.071694 4.221E-05 588.7458476236942 79.252 1.1664 82.547 82.217 83.383 3.295 276 113 3 0 0 0 0.18929 4 19896 19896;19971;20010;20016 21.747 9.2151 1 941990 + 11586 17220 7186 7192 14467;14468;14469;14470 14467 -0.10273238434524501 HCLSLVSAF 9 Unmodified _HCLSLVSAF_ 0 0 0 MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|10|3|sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|10|3|sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|10|3|sense MSMS UPN48_class_I_Rep_1 5 488.7519226074219 2 488.74967 975.484787 NaN NaN NaN NaN NaN NaN NaN 73.361 1 76.842 76.342 77.342 3.4812 0 0 0 0.38478 1 17281 17281 4.3292 0 1 11587 16531 7187 7193 14471 14471 -0.003935574916340556 HCMDILHY 8 Unmodified _HCMDILHY_ 0 0 0 L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|75|3|anti-sense L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|75|3|anti-sense L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|75|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 516.2255859375 2 516.225505 1030.43646 0.24674 0.00012738 -0.34549 -0.00017835 -0.098746 -5.0975E-05 516.22548035649 46.704 1.1268 50.223 49.754 50.88 3.5192 204 70 4 0 0 0 0.82752 1 9095 9095 10.183 10.183 1 2130000 11588 11011 7188 7194 14472 14472 -0.07754374403202746 HCMDILHY 8 Unmodified _HCMDILHY_ 0 0 0 L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|75|3|anti-sense L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|75|3|anti-sense L1MB8_dup5018|chr5:138978061-138979057:-|1.5273687787648522|0.011639778601236|7.04|151.0|75|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.2254028320312 2 516.225505 1030.43646 0.2537 0.00013097 -0.3248 -0.00016767 -0.0711 -3.6704E-05 516.2254866804219 46.435 1.2879 50.185 49.704 50.992 3.7494 233 90 4 0 0 0 0.82752 1 9242 9242 10.183 10.183 1 1919000 11589 11011 7188 7194 14473 14473 -0.07754374403202746 HCMLMSRF 8 Unmodified _HCMLMSRF_ 0 0 0 L1MB7_dup1937|chr2:25776071-25776687:-|1.218346850411684|0.0109296538493813|6.8|150.0|48|3|anti-sense L1MB7_dup1937|chr2:25776071-25776687:-|1.218346850411684|0.0109296538493813|6.8|150.0|48|3|anti-sense L1MB7_dup1937|chr2:25776071-25776687:-|1.218346850411684|0.0109296538493813|6.8|150.0|48|3|anti-sense MSMS UPN47_class_I_Rep_2 3 512.7297973632812 2 512.7299 1023.44525 NaN NaN NaN NaN NaN NaN NaN 26.83 1 30.329 29.829 30.829 3.4986 0 0 0 0.40738 1 3939 3939 0.79363 0 1 11590 10770 7189 7195 14474 14474 -0.06553724038371911 HCRAPKNCIY 10 Unmodified _HCRAPKNCIY_ 0 0 0 REV__L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|124|2|sense REV__L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|124|2|sense MSMS UPN47_class_I_Rep_3 4 602.7871704101562 2 602.789335 1203.56412 NaN NaN NaN NaN NaN NaN NaN 44.311 1 47.555 47.055 48.055 3.2441 0 0 0 0.53105 1 9280 9280 3.2813 0.78282 1 + 11591 29596 7190 7196 14475 14475 -0.029522338091737765 HCRCLFLSMS 10 Unmodified _HCRCLFLSMS_ 0 0 0 REV__L1MA9_dup12264|chr12:66219574-66220510:-|1.412327586877392|0.050498290260581|4.81|151.0|57|3|anti-sense REV__L1MA9_dup12264|chr12:66219574-66220510:-|1.412327586877392|0.050498290260581|4.81|151.0|57|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 598.77001953125 2 598.772296 1195.53004 0.19455 0.00011649 -2.8689 -0.0017178 -2.6743 -0.0016013 598.77052498104 47.94 0.19857 51.621 51.473 51.672 3.6819 11 9 2 0 0 0 0.56118 1 10305 10305 2.9952 0.41776 1 76570 + 11592 25602 7191 7197 14476 14476 -0.05990398292419741 HCRKALGA 8 Unmodified _HCRKALGA_ 0 0 0 REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|139|2|anti-sense REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|139|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 428.2319030761719 2 428.234522 854.45449 -0.43665 -0.00018699 -1.5423 -0.00066048 -1.979 -0.00084747 428.23203185085464 109.22 0.3926 112.76 112.6 113 3.5347 116 51 4 0 0 0 0.82752 1 26816 26816 0.79363 0 1 5566900 + 11593 25282 7192 7198 14477 14477 0.02144128633813125 HCRTIIECD 9 Unmodified _HCRTIIECD_ 0 0 0 Tigger3a_dup797|chr2:177316523-177316871:+|1.16524871003731|0.077462245143399|3.91|151.0|30|3|anti-sense Tigger3a_dup797|chr2:177316523-177316871:+|1.16524871003731|0.077462245143399|3.91|151.0|30|3|anti-sense Tigger3a_dup797|chr2:177316523-177316871:+|1.16524871003731|0.077462245143399|3.91|151.0|30|3|anti-sense MSMS UPN47_class_I_Rep_2 3 545.2470703125 2 545.244426 1088.4743 NaN NaN NaN NaN NaN NaN NaN 27.534 1 31.033 30.533 31.533 3.4986 0 0 0 0.37476 1 4148 4148 6.7232 0 1 11594 33366 7193 7199 14478 14478 -0.06639908208376255 HCSGHGTFSLE 11 Unmodified _HCSGHGTFSLE_ 0 0 0 ENSG00000120332|ENST00000239462|TNN ENSG00000120332|ENST00000239462|TNN ENSG00000120332|ENST00000239462|TNN MSMS UPN46_class_I_Rep_3 1 587.7505493164062 2 587.75093 1173.48731 NaN NaN NaN NaN NaN NaN NaN 118.31 1 118.31 117.81 118.81 0 0 0 0 0.38417 1 29362 29362 1.1933 0.12188 1 11595 2321 7194 7200 14479 14479 -0.09249753824633444 HCSVVIYCY 9 Unmodified _HCSVVIYCY_ 0 0 0 MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|61|2|anti-sense MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|61|2|anti-sense MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|61|2|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7422485351562 2 543.740988 1085.46742 NaN NaN NaN NaN NaN NaN NaN 112.59 1 116.1 115.6 116.6 3.5171 0 0 0 0.39326 1 27395 27395 2.3027 0.4585 1 11596 16079 7195 7201 14480 14480 -0.07189221088947306 HCTQFGTPCGF 11 Unmodified _HCTQFGTPCGF_ 0 0 0 REV__THE1A-int_dup584|chr6:143784996-143786558:-|1.3118386386000978|0.0387522336373815|5.08|151.0|24|2|sense REV__THE1A-int_dup584|chr6:143784996-143786558:-|1.3118386386000978|0.0387522336373815|5.08|151.0|24|2|sense MSMS UPN48_class_I_Rep_3 7 599.2434692382812 2 599.244426 1196.4743 NaN NaN NaN NaN NaN NaN NaN 52.824 1 56.422 55.922 56.922 3.5979 0 0 0 0.38417 1 10947 10947 1.1933 0.39971 1 + 11597 32216 7196 7202 14481 14481 -0.11607908208384288 HCVMFPTLCPS 11 Unmodified _HCVMFPTLCPS_ 0 0 0 L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|243|2|anti-sense L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|243|2|anti-sense L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|243|2|anti-sense MSMS UPN48_class_I_Rep_1 5 617.77490234375 2 617.774505 1233.53446 NaN NaN NaN NaN NaN NaN NaN 42.978 1 46.488 45.988 46.988 3.5103 0 0 0 0.38417 1 8014 8014 1.4819 0.28856 1 11598 14522 7197 7203 14482 14482 -0.0729693386949748 HCVRMHFP 8 Unmodified _HCVRMHFP_ 0 0 0 REV__L1MA3_dup6471|chr11:74217571-74220054:+|2.58147834899071|0.0706936123729265|5.19|151.0|99|1|anti-sense REV__L1MA3_dup6471|chr11:74217571-74220054:+|2.58147834899071|0.0706936123729265|5.19|151.0|99|1|anti-sense MSMS UPN47_class_I_Rep_2 3 513.7417602539062 2 513.741657 1025.46876 NaN NaN NaN NaN NaN NaN NaN 36.304 1 39.715 39.215 40.215 3.4114 0 0 0 0.40738 1 6795 6795 0.79363 0.10326 1 + 11599 25077 7198 7204 14483 14483 -0.042955422095474205 HCVVMMGHLGG 11 Unmodified _HCVVMMGHLGG_ 0 0 0 REV__MLT1H2_dup3914|chr16:23893914-23894312:-|1.4612951063117978|0.0130916969413898|6.8|150.0|20|2|anti-sense REV__MLT1H2_dup3914|chr16:23893914-23894312:-|1.4612951063117978|0.0130916969413898|6.8|150.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.712890625 2 570.759189 1139.50383 NaN NaN NaN NaN NaN NaN NaN 45.264 1 45.264 44.764 45.764 0 0 0 0 0.38417 1 9188 9188 1.4819 0.68827 1 + 11600 31761 7199 7205 14484 14484 -0.060346674639049525 HCVWGWGG 8 Unmodified _HCVWGWGG_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MSMS UPN48_class_I_Rep_1 5 451.19287109375 2 451.192322 900.370092 NaN NaN NaN NaN NaN NaN NaN 117.91 1 121.53 121.03 122.03 3.6215 0 0 0 0.40738 1 28744 28744 0.79363 0 1 11601 15934 7200 7206 14485 14485 -0.08407822182925884 HCVWGWGG 8 Unmodified _HCVWGWGG_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MSMS UPN48_class_I_Rep_2 6 451.1924743652344 2 451.192322 900.370092 NaN NaN NaN NaN NaN NaN NaN 21.642 1 25.288 24.788 25.788 3.6459 0 0 0 0.40738 1 2079 2079 0.79363 0 1 11602 15934 7200 7206 14486 14486 -0.08407822182925884 HCVWGWGG 8 Unmodified _HCVWGWGG_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|100|1|anti-sense MSMS UPN48_class_I_Rep_2 6 450.7490234375 2 451.192322 900.370092 NaN NaN NaN NaN NaN NaN NaN 64.055 1 67.53 67.03 68.03 3.4743 0 0 0 0.40738 1 14449 14449 0.79363 0 1 11603 15934 7200 7206 14487 14487 -0.08407822182925884 HCVYVPPF 8 Unmodified _HCVYVPPF_ 0 0 0 L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_2 3 481.2343444824219 2 481.233656 960.452759 NaN NaN NaN NaN NaN NaN NaN 48.169 1 51.518 51.018 52.018 3.3492 0 0 0 0.39167 1 10390 10390 11.114 1.767 1 11604 10034 7201 7207 14488 14488 -0.0290492517480061 HCVYVPPF 8 Unmodified _HCVYVPPF_ 0 0 0 L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_3 4 481.235107421875 2 481.233656 960.452759 NaN NaN NaN NaN NaN NaN NaN 48.112 1 51.352 50.852 51.852 3.2405 0 0 0 0.4032 1 10431 10431 6.3541 1.1234 1 11605 10034 7201 7207 14489 14489 -0.0290492517480061 HCVYVPPF 8 Unmodified _HCVYVPPF_ 0 0 0 L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense L1MA7_dup7608|chr17:2102671-2103167:-|1.4126643314383491|0.0724399128651371|4.29|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_3 4 481.2354736328125 2 481.233656 960.452759 NaN NaN NaN NaN NaN NaN NaN 48.327 1 51.568 51.068 52.068 3.2405 0 0 0 0.4032 1 10497 10497 6.3541 1.1234 1 11606 10034 7201 7207 14490 14490 -0.0290492517480061 HCWHFIWV 8 Unmodified _HCWHFIWV_ 0 0 0 Tigger2b_Pri_dup1373|chr10:87947207-87947609:-|5.630360586607598|0.3371153037718251|4.06|151.0|20|1|anti-sense Tigger2b_Pri_dup1373|chr10:87947207-87947609:-|5.630360586607598|0.3371153037718251|4.06|151.0|20|1|anti-sense Tigger2b_Pri_dup1373|chr10:87947207-87947609:-|5.630360586607598|0.3371153037718251|4.06|151.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.7666015625 2 564.265822 1126.51709 0.41455 0.00023392 -3.174 -0.001791 -2.7595 -0.0015571 564.7662834420423 48.737 0.13037 51.972 51.88 52.011 3.2345 6 5 2 0 0 0 0.82752 1 10623 10623 2.8892 0.82947 1 67581 11607 33339 7202 7208 14491 14491 -0.04110725298005491 HCYYPRIY 8 Unmodified _HCYYPRIY_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|256|2|anti-sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|256|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.7601928710938 2 557.760569 1113.50659 NaN NaN NaN NaN NaN NaN NaN 117.32 1 120.98 120.48 121.48 3.6607 0 0 0 0.40738 1 28114 28114 0.79363 0 1 + 11608 25169 7203 7209 14492 14492 -0.04562752743072451 HCYYTSRW 8 Unmodified _HCYYTSRW_ 0 0 0 Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|13|1|sense Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|13|1|sense Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 558.2406005859375 2 558.240001 1114.46545 NaN NaN NaN NaN NaN NaN NaN 22.462 1 26.136 25.636 26.636 3.6749 0 0 0 0.40738 1 2614 2614 0.79363 0 1 11609 33298 7204 7210 14493 14493 -0.08720513782554917 HDAALNLR 8 Unmodified _HDAALNLR_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN48_class_I_Rep_2 6 455.24908447265625 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 49.096 1 52.814 52.314 53.314 3.7175 0 0 0 0.40625 1 9882 9882 2.3027 0 1 11610 4588 7205 7211 14494 14494 0.024911498147503153 HDANNRQRQ 9 Unmodified _HDANNRQRQ_ 0 0 0 L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|56|1|sense L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|56|1|sense L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|56|1|sense MSMS UPN47_class_I_Rep_1 2 569.7767944335938 2 569.776659 1137.53877 NaN NaN NaN NaN NaN NaN NaN 17.397 1 20.947 20.447 21.447 3.5504 0 0 0 0.4007 1 1291 1291 0.52476 0 1 11611 9381 7206 7212 14495 14495 -0.024502490157374268 HDAVLRLVEIR 11 Unmodified _HDAVLRLVEIR_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553336.5_1_14:23938909-23944520:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MSMS UPN48_class_I_Rep_2 6 440.9288635253906 3 440.929733 1319.76737 0.15405 6.7924E-05 -1.9901 -0.00087749 -1.836 -0.00080957 440.9290445686595 27.264 0.17731 30.895 30.765 30.943 3.6311 30 18 2 0 0 0 0.68024 1 3600 3600 0.50596 0.051438 1 71194 11612 2619 7207 7213 14496 14496 0.12027530508476048 HDAVLRLVEIR 11 Unmodified _HDAVLRLVEIR_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553336.5_1_14:23938909-23944520:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-SECPEP UPN48_class_I_Rep_2 6 440.5946350097656 3 440.929733 1319.76737 0.14065 6.2015E-05 -1.9727 -0.00086983 -1.8321 -0.00080782 440.9290507460915 29.394 0.21307 33.026 32.853 33.066 3.6316 37 22 2 0 0 0 22.551 1 4164 4164 1.1098 0.41209 1 63058 11613 2619 7207 7213 14497 14497 0.12027530508476048 HDCAHIRQGQ 10 Unmodified _HDCAHIRQGQ_ 0 0 0 L1MD2_dup8868|chr15:42849042-42850567:-|1.59888993548671|0.0509474415842029|4.97|151.0|103|3|anti-sense L1MD2_dup8868|chr15:42849042-42850567:-|1.59888993548671|0.0509474415842029|4.97|151.0|103|3|anti-sense L1MD2_dup8868|chr15:42849042-42850567:-|1.59888993548671|0.0509474415842029|4.97|151.0|103|3|anti-sense MSMS UPN46_class_I_Rep_3 1 582.7709350585938 2 582.769988 1163.52542 NaN NaN NaN NaN NaN NaN NaN 66.831 1 66.831 66.331 67.331 0 0 0 0 0.53105 1 15183 15183 1.6526 0.32309 1 11614 12041 7208 7214 14498 14498 -0.04979823119310822 HDEEDEHI 8 Unmodified _HDEEDEHI_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MULTI-MSMS UPN46_class_I_Rep_3 1 512.2042236328125 2 512.204335 1022.39412 0.32046 0.00016414 -0.062762 -3.2147E-05 0.2577 0.00013199 512.2041858076658 103.93 0.36432 103.93 103.78 104.14 0 51 31 3 0 0 0 0.82752 1 25394 25394 2.5775 0 1 557770 + 11615 19692 7209 7215 14499 14499 -0.11618355006226011 HDEEDEHI 8 Unmodified _HDEEDEHI_ 0 0 0 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4 MSMS UPN47_class_I_Rep_3 4 512.2041625976562 2 512.204335 1022.39412 NaN NaN NaN NaN NaN NaN NaN 95.257 1 98.667 98.167 99.167 3.4095 0 0 0 0.40604 1 23684 23684 2.5775 0 1 + 11616 19692 7209 7215 14500 14500 -0.11618355006226011 HDEEKDVI 8 Unmodified _HDEEKDVI_ 0 0 0 ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB MSMS UPN48_class_I_Rep_1 5 492.73590087890625 2 492.735271 983.45599 NaN NaN NaN NaN NaN NaN NaN 66.552 1 70.003 69.503 70.503 3.4516 0 0 0 0.40625 1 15228 15228 2.3027 0.24298 1 11617 4162 7210 7216 14501 14501 -0.0364000358707699 HDEGWFRKVG 10 Unmodified _HDEGWFRKVG_ 0 0 0 REV__L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|61|2|anti-sense REV__L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|61|2|anti-sense MSMS UPN47_class_I_Rep_1 2 615.8049926757812 2 615.804354 1229.59415 NaN NaN NaN NaN NaN NaN NaN 50.779 1 54.407 53.907 54.907 3.6285 0 0 0 0.53105 1 11164 11164 1.6526 0 1 + 11618 26734 7211 7217 14502 14502 -0.011458355479817328 HDETQGHLL 9 Unmodified _HDETQGHLL_ 0 0 0 REV__L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|109|1|anti-sense REV__L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|109|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 525.2539672851562 2 525.254163 1048.49377 -0.23601 -0.00012396 -0.14949 -7.8519E-05 -0.38549 -0.00020248 525.2539916192138 16.152 0.85795 16.152 15.739 16.597 0 126 100 2 0 0 0 0.48643 1 970 970 2.0598 0.21551 1 89074 + 11619 30635 7212 7218 14503 14503 -0.028534926015936435 HDGLNSSQFL 10 Unmodified _HDGLNSSQFL_ 0 0 0 REV__ENSG00000197928|ENST00000598513|ZNF677 REV__ENSG00000197928|ENST00000598513|ZNF677 MSMS UPN47_class_I_Rep_1 2 559.2655639648438 2 559.26727 1116.51999 NaN NaN NaN NaN NaN NaN NaN 77.222 1 80.637 80.137 81.137 3.4149 0 0 0 0.53105 1 19148 19148 5.2969 1.3525 1 + 11620 21104 7213 7219 14504 14504 -0.033612234301244825 HDGLNSSQFL 10 Unmodified _HDGLNSSQFL_ 0 0 0 REV__ENSG00000197928|ENST00000598513|ZNF677 REV__ENSG00000197928|ENST00000598513|ZNF677 MSMS UPN47_class_I_Rep_1 2 559.26611328125 2 559.26727 1116.51999 NaN NaN NaN NaN NaN NaN NaN 77.247 1 80.662 80.162 81.162 3.4149 0 0 0 0.53105 1 19156 19156 4.897 0.141 1 + 11621 21104 7213 7219 14505 14505 -0.033612234301244825 HDIWYFFG 8 Unmodified _HDIWYFFG_ 0 0 0 L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|68|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|68|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|68|2|anti-sense MSMS UPN47_class_I_Rep_1 2 542.7460327148438 2 542.747985 1083.48142 NaN NaN NaN NaN NaN NaN NaN 115.6 1 119.2 118.7 119.7 3.5943 0 0 0 0.40604 1 28607 28607 2.5775 0.27475 1 11622 12631 7214 7220 14506 14506 -0.05698484274012117 HDKIKMKG 8 Unmodified _HDKIKMKG_ 0 0 0 REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B MSMS UPN47_class_I_Rep_2 3 478.7710876464844 2 478.770937 955.527321 NaN NaN NaN NaN NaN NaN NaN 35.717 1 39.128 38.628 39.628 3.4114 0 0 0 0.40625 1 6617 6617 2.3027 0 1 + 11623 18071 7215 7221 14507 14507 0.04777837636584081 HDKITPRM 8 Unmodified _HDKITPRM_ 0 0 0 REV__ENST00000465020.5_1_3:38519799-38524820:+|nuORF REV__ENST00000465020.5_1_3:38519799-38524820:+|nuORF MSMS UPN46_class_I_Rep_3 1 499.2755432128906 2 499.266019 996.517485 NaN NaN NaN NaN NaN NaN NaN 66.441 1 66.441 65.941 66.941 0 0 0 0 0.40643 1 15074 15074 2.0598 0 1 + 11624 18532 7216 7222 14508 14508 0.019086496312070267 HDKTWKLKEL 10 Unmodified _HDKTWKLKEL_ 0 0 0 REV__ENST00000512118.1_1_5:127446383-127446599:+|nuORF REV__ENST00000512118.1_1_5:127446383-127446599:+|nuORF MSMS UPN48_class_I_Rep_3 7 649.3649291992188 2 649.366787 1296.71902 NaN NaN NaN NaN NaN NaN NaN 104.86 1 108.58 108.08 109.08 3.7192 0 0 0 0.53105 1 24755 24755 5.7319 2.7366 1 + 11625 22745 7217 7223 14509 14509 0.08253036868518393 HDLGEYWYF 9 Unmodified _HDLGEYWYF_ 0 0 0 REV__ENSG00000123496|ENST00000243213|IL13RA2 REV__ENSG00000123496|ENST00000243213|IL13RA2 MSMS UPN48_class_I_Rep_1 5 615.268798828125 2 615.266739 1228.51892 NaN NaN NaN NaN NaN NaN NaN 41.11 1 44.616 44.116 45.116 3.506 0 0 0 0.39518 1 7455 7455 1.8442 0.51471 1 + 11626 18782 7218 7224 14510 14510 -0.08619437799075058 HDLTLCLSVF 10 Unmodified _HDLTLCLSVF_ 0 0 0 L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|204|1|anti-sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|198|2|anti-sense L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|204|1|anti-sense L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|204|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 574.329345703125 2 574.294442 1146.57433 0.47556 0.00027311 0.12726 7.3085E-05 0.60282 0.00034619 574.2944816256035 76.883 0.13628 80.495 80.389 80.525 3.6116 28 14 3 0 0 0 0.84575 1 18153 18153 1.3295 0 1 161860 11627 14305 7219 7225 14511 14511 0.006906523970656053 HDQLVLVF 8 Unmodified _HDQLVLVF_ 0 0 0 REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|199|3|anti-sense REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|199|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.7708435058594 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 21.566 1 25.119 24.619 25.619 3.5533 0 0 0 0.40738 1 1986 1986 0.79363 0 1 + 11628 32708 7220 7226 14512 14512 0.04238375277122941 HDQLVLVF 8 Unmodified _HDQLVLVF_ 0 0 0 REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|199|3|anti-sense REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|199|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.7720642089844 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 24.199 1 27.765 27.265 28.265 3.5655 0 0 0 0.40738 1 2635 2635 0.79363 0 1 + 11629 32708 7220 7226 14513 14513 0.04238375277122941 HDQVCTYA 8 Unmodified _HDQVCTYA_ 0 0 0 REV__ENSG00000133812.16,SBF2,chr11,-,I30.1,9828633,9829355|48|6.49|3|intron REV__ENSG00000133812.16,SBF2,chr11,-,I30.1,9828633,9829355|48|6.49|3|intron MSMS UPN46_class_I_Rep_3 1 468.61322021484375 2 468.697635 935.380716 NaN NaN NaN NaN NaN NaN NaN 72.792 1 72.792 72.292 73.292 0 0 0 0 0.40625 1 16843 16843 2.3027 0 1 + 11630 19069 7221 7227 14514 14514 -0.08955884319175311 HDRRRPEY 8 Unmodified _HDRRRPEY_ 0 0 0 REV__nc|ENSG00000146143|P49643-2|PRIM2 REV__nc|ENSG00000146143|P49643-2|PRIM2 MSMS UPN47_class_I_Rep_1 2 565.26220703125 2 564.786496 1127.55844 NaN NaN NaN NaN NaN NaN NaN 42.873 1 46.561 46.061 47.061 3.6875 0 0 0 0.40404 1 8760 8760 5.2307 2.9279 1 + 11631 19531 7222 7228 14515 14515 -0.00023873004965935252 HDSSWTYSY 9 Unmodified _HDSSWTYSY_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.2293090820312 2 573.230353 1144.44615 NaN NaN NaN NaN NaN NaN NaN 76.565 1 79.98 79.48 80.48 3.4149 0 0 0 0.38639 1 18954 18954 3.9444 0.3479 1 11632 7742 7223 7229 14516 14516 -0.12029191592478128 HDSSWTYSY 9 Unmodified _HDSSWTYSY_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense MSMS UPN47_class_I_Rep_2 3 573.2283325195312 2 573.230353 1144.44615 NaN NaN NaN NaN NaN NaN NaN 76.759 1 80.09 79.59 80.59 3.3315 0 0 0 0.38478 1 19011 19011 4.3292 0 1 11633 7742 7223 7229 14517 14517 -0.12029191592478128 HDSSWTYSY 9 Unmodified _HDSSWTYSY_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.2283935546875 2 573.230353 1144.44615 NaN NaN NaN NaN NaN NaN NaN 76.596 1 79.865 79.365 80.365 3.269 0 0 0 0.38478 1 19049 19049 4.3292 0 1 11634 7742 7223 7229 14518 14518 -0.12029191592478128 HDSSWTYSY 9 Unmodified _HDSSWTYSY_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.2279052734375 2 573.230353 1144.44615 NaN NaN NaN NaN NaN NaN NaN 76.772 1 80.041 79.541 80.541 3.269 0 0 0 0.39518 1 19098 19098 1.8442 0 1 11635 7742 7223 7229 14519 14519 -0.12029191592478128 HDSSWTYSY 9 Unmodified _HDSSWTYSY_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|99|2|anti-sense MSMS UPN47_class_I_Rep_3 4 573.2706909179688 2 573.230353 1144.44615 NaN NaN NaN NaN NaN NaN NaN 76.853 1 80.122 79.622 80.622 3.269 0 0 0 0.38478 1 19121 19121 4.3292 0 1 11636 7742 7223 7229 14520 14520 -0.12029191592478128 HDVKRFIH 8 Unmodified _HDVKRFIH_ 0 0 0 L1MB3_dup11570|chr12:11701121-11701467:-|2.012458553067406|0.0198474048373682|6.66|151.0|25|3|anti-sense L1MB3_dup11570|chr12:11701121-11701467:-|2.012458553067406|0.0198474048373682|6.66|151.0|25|3|anti-sense L1MB3_dup11570|chr12:11701121-11701467:-|2.012458553067406|0.0198474048373682|6.66|151.0|25|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 526.3758544921875 2 526.293425 1050.5723 0.26639 0.0001402 3.0578 0.0016093 3.3242 0.0017495 526.2950679758119 52.371 0.048874 52.371 52.34 52.389 0 6 5 2 0 0 0 0.72333 1 11197 11197 2.3027 0.24298 1 96106 11637 10321 7224 7230 14521 14521 0.049034044941208776 HDWIPYPNP 9 Unmodified _HDWIPYPNP_ 0 0 0 REV__L1MC4_dup22141|chr18:694864-695411:-|1.3210057643577986|0.3166870137651604|2.06|151.0|29|1|anti-sense REV__L1MC4_dup22141|chr18:694864-695411:-|1.3210057643577986|0.3166870137651604|2.06|151.0|29|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.7693481445312 2 569.769448 1137.52434 -0.084256 -4.8007E-05 0.052561 2.9948E-05 -0.031695 -1.8059E-05 569.7693800476803 36.772 0.53782 40.019 39.675 40.213 3.247 53 36 2 0 0 0 0.46434 1 6895 6895 4.3292 0 1 68444 + 11638 26880 7225 7231 14522 14522 -0.03891714216570108 HEAEVLKQL 9 Unmodified _HEAEVLKQL_ 0 0 0 ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 533.7982177734375 2 533.798206 1065.58186 -0.067342 -3.5947E-05 -0.17748 -9.474E-05 -0.24483 -0.00013069 533.7980263370404 33.763 1.1959 37.461 37.083 38.279 3.6983 192 85 3 0 0 0 0.0060665 7 5950 5911;5950;5989;6029;6068;6106;6159 117.76 66.131 1 662500 11639 2227 7226 7232 14523;14524;14525;14526;14527;14528;14529 14524 0.05169127988983746 HEAEVLKQL 9 Unmodified _HEAEVLKQL_ 0 0 0 ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 533.7980346679688 2 533.798206 1065.58186 -0.060704 -3.2403E-05 -0.32731 -0.00017472 -0.38802 -0.00020712 533.7979550442896 34.097 1.2454 37.537 37.136 38.381 3.4398 206 83 4 0 0 0 0.0055879 8 6122 6040;6082;6122;6161;6204;6243;6282;6295 128.93 75.1 1 530840 11640 2227 7226 7232 14530;14531;14532;14533;14534;14535;14536;14537 14532 0.05169127988983746 HEAEVLKQL 9 Unmodified _HEAEVLKQL_ 0 0 0 ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 533.7980346679688 2 533.798206 1065.58186 -0.15532 -8.2907E-05 -0.49205 -0.00026266 -0.64737 -0.00034556 533.7978707463673 34.352 1.3107 37.616 37.183 38.493 3.2639 222 96 3 0 0 0 0.0055879 7 6181 6141;6181;6221;6263;6302;6339;6377 117.76 72.061 1 557390 11641 2227 7226 7232 14538;14539;14540;14541;14542;14543;14544 14539 0.05169127988983746 HEAPTHTF 8 Unmodified _HEAPTHTF_ 0 0 0 REV__ENST00000503120.5_1_5:138724949-138725048:-|nuORF REV__ENST00000503120.5_1_5:138724949-138725048:-|nuORF MSMS UPN48_class_I_Rep_3 7 470.2165832519531 2 470.219591 938.42463 NaN NaN NaN NaN NaN NaN NaN 62.2 1 65.71 65.21 66.21 3.5104 0 0 0 0.38547 1 13807 13807 13.508 3.3245 1 + 11642 22696 7227 7233 14545 14545 -0.047045318305322326 HECTEERPC 9 Unmodified _HECTEERPC_ 0 0 0 ENST00000526682.5_1_11:36398008-36415533:+|nuORF ENST00000526682.5_1_11:36398008-36415533:+|nuORF ENST00000526682.5_1_11:36398008-36415533:+|nuORF MSMS UPN48_class_I_Rep_2 6 551.84326171875 2 552.215866 1102.41718 NaN NaN NaN NaN NaN NaN NaN 74.326 1 77.904 77.404 78.404 3.5779 0 0 0 0.4007 1 17485 17485 0.52476 0 1 11643 7263 7228 7234 14546 14546 -0.12993375484757053 HEDLRHALQ 9 Unmodified _HEDLRHALQ_ 0 0 0 THE1B-int_dup863|chr3:136872028-136873608:+|1.8064464023122149|0.0567095202096918|4.99|151.0|78|3|anti-sense THE1B-int_dup863|chr3:136872028-136873608:+|1.8064464023122149|0.0567095202096918|4.99|151.0|78|3|anti-sense THE1B-int_dup863|chr3:136872028-136873608:+|1.8064464023122149|0.0567095202096918|4.99|151.0|78|3|anti-sense MSMS UPN46_class_I_Rep_3 1 559.786865234375 2 559.788704 1117.56285 NaN NaN NaN NaN NaN NaN NaN 42.758 1 42.758 42.258 43.258 0 0 0 0 0.38478 1 8490 8490 4.3292 0 1 11644 32933 7229 7235 14547 14547 0.00877591417952317 HEEFLAVR 8 Unmodified _HEEFLAVR_ 0 0 0 REV__L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|282|2|anti-sense REV__L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|282|2|anti-sense MSMS UPN47_class_I_Rep_2 3 500.7750244140625 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 43.586 1 46.944 46.444 47.444 3.358 0 0 0 0.4044 1 9006 9006 4.756 0.81161 1 + 11645 29996 7230 7236 14548 14548 0.014003031290030776 HEEQLQRL 8 Unmodified _HEEQLQRL_ 0 0 0 nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1;ENST00000585990.5_1_17:73910371-73916335:-|nuORF;ENST00000593156.1_1_17:73913837-73918141:-|nuORF nc|ENSG00000188878|Q8TES7-2|FBF1 nc|ENSG00000188878|Q8TES7-2|FBF1 MSMS UPN48_class_I_Rep_3 7 526.77734375 2 526.777805 1051.54106 NaN NaN NaN NaN NaN NaN NaN 26.029 1 29.795 29.295 30.295 3.7663 0 0 0 0.40501 1 3246 3246 3.9444 0 1 11646 5261 7231 7237 14549 14549 0.0173478666936262 HEFIHELK 8 Unmodified _HEFIHELK_ 0 0 0 REV__L1MB3_dup421|chr1:50955548-50956171:+|1.371524260025348|0.0225767673003522|5.92|151.0|12|2|sense REV__L1MB3_dup421|chr1:50955548-50956171:+|1.371524260025348|0.0225767673003522|5.92|151.0|12|2|sense MSMS UPN47_class_I_Rep_2 3 526.7970581054688 2 526.779816 1051.54508 NaN NaN NaN NaN NaN NaN NaN 25.818 1 29.313 28.813 29.813 3.4945 0 0 0 0.40643 1 3644 3644 2.0598 0 1 + 11647 25887 7232 7238 14550 14550 0.02136876163058332 HEFLEFEF 8 Unmodified _HEFLEFEF_ 0 0 0 ENST00000537852.5_1_12:10762420-10766167:-|nuORF;ENST00000462941.1_1_1:53699171-53704129:-|nuORF;nc|ENSG00000162385|P61326-2|MAGOH;ENSG00000162385|ENST00000371470|MAGOH;ENSG00000111196|ENST00000320756|MAGOHB ENST00000537852.5_1_12:10762420-10766167:-|nuORF ENST00000537852.5_1_12:10762420-10766167:-|nuORF MSMS UPN46_class_I_Rep_3 1 549.2501831054688 2 549.250557 1096.48656 NaN NaN NaN NaN NaN NaN NaN 81.523 1 81.523 81.023 82.023 0 0 0 0 0.40625 1 19255 19255 2.3027 0 1 11648 1961 7233 7239 14551 14551 -0.0578222520205145 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 522.2611083984375 2 522.261456 1042.50836 0.24767 0.00012935 0.033385 1.7436E-05 0.28105 0.00014678 522.2614082487299 58.673 0.53299 58.673 58.403 58.936 0 103 61 2 0 0 0 0.1249 2 12916 12916;12948 29.082 12.932 1 334690 11649 4821 7234 7240 14552;14553 14552 -0.011194204534831442 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 522.2612915039062 2 522.261456 1042.50836 0.22443 0.00011721 -0.53093 -0.00027729 -0.3065 -0.00016007 522.2610295331319 52.917 0.93652 56.476 56.101 57.037 3.5585 107 56 3 0 0 0 0.17897 2 11787 11787;11841 22.736 11.242 1 264670 11650 4821 7234 7240 14554;14555 14554 -0.011194204534831442 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 522.2606201171875 2 522.261456 1042.50836 0.10602 5.5371E-05 -0.2325 -0.00012142 -0.12648 -6.6053E-05 522.2611095512286 53.214 1.0333 56.54 56.118 57.152 3.3266 135 64 3 0 0 0 0.13244 2 11875 11875;11936 27.629 16.134 1 299300 11651 4821 7234 7240 14556;14557 14556 -0.011194204534831442 HEGEILQAF 9 Unmodified _HEGEILQAF_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 522.26123046875 2 522.261456 1042.50836 0.36838 0.00019239 -0.78901 -0.00041207 -0.42063 -0.00021968 522.2609211259124 53.345 0.90293 56.54 56.187 57.09 3.1948 106 52 3 0 0 0 0.097406 2 12026 11984;12026 34.402 18.253 1 246230 11652 4821 7234 7240 14558;14559 14559 -0.011194204534831442 HEGFVHFFL 9 Unmodified _HEGFVHFFL_ 0 0 0 L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|103|3|anti-sense L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|103|3|anti-sense L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|103|3|anti-sense MSMS UPN46_class_I_Rep_3 1 566.7686157226562 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 13.178 1 13.178 12.678 13.678 0 0 0 0 0.38478 1 316 316 4.3292 0 1 11653 14606 7235 7241 14560 14560 -0.01034819974279344 HEGHLFPYF 9 Unmodified _HEGHLFPYF_ 0 0 0 L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|43|1|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|43|1|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|43|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.7711791992188 2 573.771991 1145.52943 0.38638 0.00022169 -1.3334 -0.00076508 -0.94705 -0.00054339 573.7710968599737 77.914 0.40784 81.343 81.124 81.532 3.4289 65 40 2 0 0 0 0.46434 1 19367 19367 4.3292 2.0265 1 95302 11654 15342 7236 7242 14561 14561 -0.03751410353970641 HEHKKKKKT 9 Unmodified _HEHKKKKKT_ 0 0 0 L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|29|1|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|29|1|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|29|1|sense MSMS UPN48_class_I_Rep_3 7 582.3528442382812 2 582.354014 1162.69348 NaN NaN NaN NaN NaN NaN NaN 117 1 120.63 120.13 121.13 3.6312 0 0 0 0.4007 1 27841 27841 0.52476 0.52476 1 11655 9513 7237 7243 14562 14562 0.1186360713677459 HEHLVLSVL 9 Unmodified _HEHLVLSVL_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 523.802978515625 2 523.803291 1045.59203 0.4187 0.00021932 -0.40674 -0.00021305 0.011965 6.2675E-06 523.8030113666348 63.492 0.62849 66.95 66.503 67.131 3.4578 98 50 3 0 0 0 0.18929 1 14265 14265 21.747 0.20967 1 322650 11656 12491 7238 7244 14563 14563 0.07105735714230832 HEHLVLSVL 9 Unmodified _HEHLVLSVL_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.8027954101562 2 523.803291 1045.59203 0.43058 0.00022554 -0.51997 -0.00027236 -0.089387 -4.6821E-05 523.8028673478673 63.42 0.6967 66.894 66.463 67.16 3.4738 110 58 3 0 0 0 0.18929 1 14210 14210 21.747 0.20967 1 396290 11657 12491 7238 7244 14564 14564 0.07105735714230832 HEHLVLSVL 9 Unmodified _HEHLVLSVL_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.802490234375 2 523.803291 1045.59203 0.44339 0.00023225 -0.61925 -0.00032437 -0.17586 -9.2115E-05 523.8029460897977 63.235 0.84325 66.744 66.299 67.142 3.5091 140 66 3 0 0 0 0.26948 1 14205 14205 15.847 1.9411 1 585850 11658 12491 7238 7244 14565 14565 0.07105735714230832 HEHRKLRL 8 Unmodified _HEHRKLRL_ 0 0 0 ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_1 5 544.8235473632812 2 544.825424 1087.63629 0.42879 0.00023362 -1.1137 -0.00060676 -0.68488 -0.00037314 544.8247581411731 89.216 0.20377 92.842 92.72 92.924 3.6255 36 21 2 0 0 0 0.82752 1 21412 21412 0.69038 0.69038 1 90226 11659 5756 7239 7245 14566 14566 0.09598184651076735 HEHYFRPP 8 Unmodified _HEHYFRPP_ 0 0 0 REV__L1ME2z_dup2247|chr6:2276184-2276649:+|1.484763779868835|0.033974732584943|5.45|151.0|31|3|anti-sense REV__L1ME2z_dup2247|chr6:2276184-2276649:+|1.484763779868835|0.033974732584943|5.45|151.0|31|3|anti-sense MSMS UPN46_class_I_Rep_3 1 542.2071533203125 2 541.761958 1081.50936 NaN NaN NaN NaN NaN NaN NaN 116.5 1 116.5 116 117 0 0 0 0 0.40738 1 28842 28842 0.79363 0 1 + 11660 27906 7240 7246 14567 14567 -0.028131612938977923 HEIEALKSF 9 Unmodified _HEIEALKSF_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS UPN46_class_I_Rep_3 1 537.2848510742188 2 537.284931 1072.55531 0.32237 0.0001732 -0.11251 -6.0449E-05 0.20986 0.00011276 537.2849569855675 45.199 0.46015 45.199 44.995 45.455 0 63 42 2 0 0 0 0.095207 1 9140 9140 34.932 34.932 1 221900 11661 1186 7241 7247 14568 14568 0.021934390976412033 HEIFENHQ 8 Unmodified _HEIFENHQ_ 0 0 0 Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|54|1|anti-sense Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|54|1|anti-sense Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|54|1|anti-sense MSMS UPN47_class_I_Rep_1 2 527.2417602539062 2 527.241055 1052.46756 NaN NaN NaN NaN NaN NaN NaN 114.79 1 118.37 117.87 118.87 3.5809 0 0 0 0.40604 1 28374 28374 2.5775 0.27475 1 11662 33088 7242 7248 14569 14569 -0.05657761773113634 HEIIKKYKLT 10 Unmodified _HEIIKKYKLT_ 0 0 0 REV__L1M1_dup5045|chrX:40720107-40723383:+|7.3884846385450755|0.4269610463829356|4.11|151.0|22|1|sense REV__L1M1_dup5045|chrX:40720107-40723383:+|7.3884846385450755|0.4269610463829356|4.11|151.0|22|1|sense MSMS UPN46_class_I_Rep_3 1 636.8882446289062 2 636.887355 1271.76016 NaN NaN NaN NaN NaN NaN NaN 46.982 1 46.982 46.482 47.482 0 0 0 0 0.53105 1 9676 9676 0.40072 0 1 + 11663 24112 7243 7249 14570 14570 0.13514797908010223 HEIITLEQY 9 Unmodified _HEIITLEQY_ 0 0 0 nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B MSMS UPN46_class_I_Rep_3 1 573.2952880859375 2 573.295496 1144.57644 NaN NaN NaN NaN NaN NaN NaN 57.37 1 57.37 56.87 57.87 0 0 0 0 0.13613 1 12565 12565 20.415 10.341 1 11664 1243 7244 7250 14571 14571 0.00993404406517584 HEIITLEQY 9 Unmodified _HEIITLEQY_ 0 0 0 nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B MSMS UPN46_class_I_Rep_3 1 573.2969360351562 2 573.295496 1144.57644 NaN NaN NaN NaN NaN NaN NaN 57.387 1 57.387 56.887 57.887 0 0 0 0 0.092202 1 12570 12570 26.268 13.226 1 11665 1243 7244 7250 14572 14572 0.00993404406517584 HEIITPEQF 9 Unmodified _HEIITPEQF_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN46_class_I_Rep_3 1 557.2817993164062 2 557.282389 1112.55022 0.34585 0.00019274 -1.9368 -0.0010793 -1.5909 -0.00088659 557.2814264591732 55.196 0.35604 55.196 54.894 55.25 0 69 41 2 0 0 0 0.081756 3 11956 11919;11956;12003 38.176 15.439 1 718830 11666 2368 7245 7251 14573;14574;14575 14574 -0.001548647649542545 HEIVLKVAY 9 Unmodified _HEIVLKVAY_ 0 0 0 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MSMS UPN46_class_I_Rep_3 1 536.3138427734375 2 536.313492 1070.61243 NaN NaN NaN NaN NaN NaN NaN 50.024 1 50.024 49.524 50.524 0 0 0 0 0.013516 1 10548 10548 55.503 24.234 1 11667 1056 7246 7252 14576 14576 0.07994906374028687 HELDYVFP 8 Unmodified _HELDYVFP_ 0 0 0 REV__L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|91|3|sense REV__L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|91|3|sense MSMS UPN46_class_I_Rep_3 1 510.24627685546875 2 510.245275 1018.476 NaN NaN NaN NaN NaN NaN NaN 73.328 1 73.328 72.828 73.828 0 0 0 0 0.40738 1 16993 16993 0.79363 0 1 + 11668 24867 7247 7253 14577 14577 -0.03250207856478937 HENYEHNRKGY 11 Unmodified _HENYEHNRKGY_ 0 0 0 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 MULTI-SECPEP UPN47_class_I_Rep_3 4 482.75811767578125 3 482.888485 1445.64362 -0.24852 -0.00012001 0.4406 0.00021276 0.19209 9.2756E-05 482.88870936304704 42.206 0.89946 45.445 45.314 46.214 3.2394 79 61 2 0 0 0 22.551 1 8703 8703 1.0136 0.31591 1 204180 11669 5411 7248 7254 14578 14578 -0.06137172329840723 HEQIKKKT 8 Unmodified _HEQIKKKT_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MSMS UPN48_class_I_Rep_1 5 506.2993469238281 2 506.300916 1010.58728 NaN NaN NaN NaN NaN NaN NaN 87.605 1 91.223 90.723 91.723 3.6187 0 0 0 0.40753 1 20995 20995 0.6015 0 1 11670 1822 7249 7255 14579 14579 0.08240851571486019 HERDRRHDG 9 Unmodified _HERDRRHDG_ 0 0 0 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 MSMS UPN47_class_I_Rep_2 3 589.281494140625 2 589.282109 1176.54966 NaN NaN NaN NaN NaN NaN NaN 38.317 1 41.705 41.205 42.205 3.3879 0 0 0 0.39518 1 7405 7405 1.8442 0 1 + 11671 32115 7250 7256 14580 14580 -0.031548466414278664 HERNREERWRD 11 Unmodified _HERNREERWRD_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MULTI-SECPEP UPN46_class_I_Rep_3 1 527.9230346679688 3 528.257571 1581.75088 0.0023883 1.2616E-06 0.24588 0.00012989 0.24827 0.00013115 528.2577019825181 26.702 0.52489 26.702 26.546 27.071 0 67 39 2 0 0 0 22.551 1 3817 3817 0.094841 0.011491 1 164000 + 11672 18677 7251 7257 14581 14581 -0.016722023955935583 HESCCWECYC 10 Unmodified _HESCCWECYC_ 0 0 0 REV__L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|62|2|anti-sense REV__L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|62|2|anti-sense MSMS UPN47_class_I_Rep_3 4 631.6907348632812 2 631.690312 1261.36607 NaN NaN NaN NaN NaN NaN NaN 78.893 1 82.188 81.688 82.688 3.295 0 0 0 0.53105 1 19692 19692 0 0 1 + 11673 28982 7252 7258 14582 14582 -0.2541578384548302 HESFGLDLY 9 Unmodified _HESFGLDLY_ 0 0 0 REV__Charlie1a_dup552|chr2:24249793-24250927:+|1.1761044452124725|0.2061139211574492|2.51|151.0|23|2|sense REV__Charlie1a_dup552|chr2:24249793-24250927:+|1.1761044452124725|0.2061139211574492|2.51|151.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.7533569335938 2 540.753464 1079.49238 0.29016 0.0001569 -0.41567 -0.00022478 -0.12551 -6.7872E-05 540.7533604356535 60.804 0.39848 60.804 60.619 61.017 0 65 48 2 0 0 0 0.18929 1 13485 13485 21.747 4.8044 1 207360 + 11674 17341 7253 7259 14583 14583 -0.04419126690345365 HESGASIKI 9 Unmodified _HESGASIKI_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MULTI-MSMS UPN48_class_I_Rep_2 6 471.25555419921875 2 471.256174 940.497795 0.25605 0.00012066 -0.82121 -0.000387 -0.56516 -0.00026634 471.2557073694981 24.73 0.73574 28.366 28.076 28.812 3.6363 119 85 2 0 0 0 0.12096 1 2906 2906 29.841 7.1043 1 82449 11675 4157 7254 7260 14584 14584 0.025165968920987325 HESGASIKI 9 Unmodified _HESGASIKI_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MULTI-MSMS UPN48_class_I_Rep_3 7 471.25518798828125 2 471.256174 940.497795 0.094492 4.453E-05 -0.63287 -0.00029824 -0.53837 -0.00025371 471.25572950617425 24.732 0.60722 28.501 28.148 28.755 3.769 100 72 2 0 0 0 0.15122 2 2884 2884;2913 25.399 3.6527 1 71205 11676 4157 7254 7260 14585;14586 14585 0.025165968920987325 HESKADFL 8 Unmodified _HESKADFL_ 0 0 0 REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS UPN46_class_I_Rep_3 1 473.7343444824219 2 473.735074 945.455596 -0.23716 -0.00011235 -0.00378 -1.7907E-06 -0.24094 -0.00011414 473.7349690445618 19.817 0.45435 19.817 19.519 19.973 0 70 45 2 0 0 0 0.82752 1 1939 1939 4.3292 0.38484 1 95219 + 11677 19675 7255 7261 14587 14587 -0.019313785162921704 HETEGKKL 8 Unmodified _HETEGKKL_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 471.2554931640625 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 24.543 1 28.109 27.609 28.609 3.5667 0 0 0 0.40472 1 2725 2725 4.3292 0 1 11678 32978 7256 7262 14588 14588 0.025165968920987325 HETEGKKL 8 Unmodified _HETEGKKL_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 471.2550354003906 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 24.608 1 28.175 27.675 28.675 3.5667 0 0 0 0.38444 1 2741 2741 13.906 0 1 11679 32978 7256 7262 14589 14589 0.025165968920987325 HETEGKKL 8 Unmodified _HETEGKKL_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 471.2559509277344 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 24.753 1 28.319 27.819 28.819 3.5667 0 0 0 0.37141 1 2778 2778 17.113 0 1 11680 32978 7256 7262 14590 14590 0.025165968920987325 HETEGKKL 8 Unmodified _HETEGKKL_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 471.2558898925781 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 24.874 1 28.441 27.941 28.941 3.5667 0 0 0 0.40472 1 2811 2811 4.3292 0 1 11681 32978 7256 7262 14591 14591 0.025165968920987325 HETEGKKL 8 Unmodified _HETEGKKL_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.2560729980469 2 471.256174 940.497795 0.25605 0.00012066 -0.82121 -0.000387 -0.56516 -0.00026634 471.2557073694981 24.73 0.73574 28.366 28.076 28.812 3.6363 119 85 2 0 0 0 0.82752 2 2939 2939;2982 19.257 0 1 82449 11682 32978 7256 7262 14592;14593 14592 0.025165968920987325 HETEGKKL 8 Unmodified _HETEGKKL_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|31|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.2555236816406 2 471.256174 940.497795 0.094492 4.453E-05 -0.63287 -0.00029824 -0.53837 -0.00025371 471.25572950617425 24.732 0.60722 28.501 28.148 28.755 3.769 100 72 2 0 0 0 0.82752 1 2854 2854 19.257 0 1 71205 11683 32978 7256 7262 14594 14594 0.025165968920987325 HETKATYP 8 Unmodified _HETKATYP_ 0 0 0 REV__L1MEc_dup189|chr1:32151093-32151739:-|1.0648980385685625|0.0086440090500991|6.94|151.0|5|1|sense REV__L1MEc_dup189|chr1:32151093-32151739:-|1.0648980385685625|0.0086440090500991|6.94|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 473.73492431640625 2 473.735074 945.455596 NaN NaN NaN NaN NaN NaN NaN 19.489 1 19.489 18.989 19.989 0 0 0 0 0.40501 1 1865 1865 3.9444 0 1 + 11684 28429 7257 7263 14595 14595 -0.01931378516303539 HETTDPLEPV 10 Unmodified _HETTDPLEPV_ 0 0 0 REV__ENST00000515800.6_1_5:86667940-86686697:+|nuORF REV__ENST00000515800.6_1_5:86667940-86686697:+|nuORF MSMS UPN47_class_I_Rep_1 2 569.2587280273438 2 569.274761 1136.53497 NaN NaN NaN NaN NaN NaN NaN 73.086 1 76.472 75.972 76.972 3.3861 0 0 0 0.53105 1 17925 17925 19.257 1.1106 1 + 11685 19521 7258 7264 14596 14596 -0.027837763528395953 HEVDKSELKD 10 Unmodified _HEVDKSELKD_ 0 0 0 ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136268294-136268516:-|nuORF ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 MULTI-MSMS UPN47_class_I_Rep_1 2 600.30078125 2 600.298767 1198.58298 0.19923 0.0001196 1.7573 0.0010549 1.9565 0.0011745 600.2999520523016 48.017 0.19595 51.699 51.579 51.775 3.6819 10 8 2 0 0 0 0.56333 1 10335 10335 1.4819 0.15237 1 63917 11686 3417 7259 7265 14597 14597 -0.008367024327753825 HEVIERHGMY 10 Unmodified _HEVIERHGMY_ 0 0 0 REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 MSMS UPN48_class_I_Rep_1 5 635.8038940429688 2 635.803497 1269.59244 NaN NaN NaN NaN NaN NaN NaN 47.887 1 51.409 50.909 51.909 3.5219 0 0 0 0.53105 1 9511 9511 1.6526 0 1 + 11687 19654 7260 7266 14598 14598 -0.03157212628207162 HEVLSQAY 8 Unmodified _HEVLSQAY_ 0 0 0 L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|261|2|anti-sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|261|2|anti-sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|261|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 473.7348937988281 2 473.735074 945.455596 -0.2313 -0.00010957 -0.13895 -6.5824E-05 -0.37024 -0.0001754 473.7350152871339 20.094 0.30389 20.094 19.955 20.259 0 37 30 2 0 0 0 0.82752 1 2010 2010 8.5933 0 1 48643 11688 14222 7261 7267 14599 14599 -0.019313785162921704 HEVLSQAY 8 Unmodified _HEVLSQAY_ 0 0 0 L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|261|2|anti-sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|261|2|anti-sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|261|2|anti-sense MSMS UPN46_class_I_Rep_3 1 473.7347412109375 2 473.735074 945.455596 NaN NaN NaN NaN NaN NaN NaN 19.627 1 19.627 19.127 20.127 0 0 0 0 0.40292 1 1902 1902 6.7232 0 1 11689 14222 7261 7267 14600 14600 -0.019313785162921704 HEVPYTTSF 9 Unmodified _HEVPYTTSF_ 0 0 0 ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9 ENST00000556170.5_1_14:75553702-75572727:-|nuORF ENST00000556170.5_1_14:75553702-75572727:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.7537231445312 2 540.753464 1079.49238 0.31733 0.0001716 0.038624 2.0886E-05 0.35596 0.00019248 540.7534315768046 48.694 0.65979 48.694 48.452 49.112 0 102 60 2 0 0 0 0.027484 2 10184 10184;10230 58.679 58.679 1 424240 11690 2286 7262 7268 14601;14602 14601 -0.0441912669039084 HEVPYTTSF 9 Unmodified _HEVPYTTSF_ 0 0 0 ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9 ENST00000556170.5_1_14:75553702-75572727:-|nuORF ENST00000556170.5_1_14:75553702-75572727:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 540.75390625 2 540.753464 1079.49238 0.19185 0.00010374 -0.70703 -0.00038233 -0.51518 -0.00027859 540.7531153379073 44.798 0.57308 48.042 47.763 48.336 3.2441 43 36 2 0 0 0 0.41259 1 9397 9397 7.2892 1.5288 1 78445 11691 2286 7262 7268 14603 14603 -0.0441912669039084 HEVWCWLYM 9 Unmodified _HEVWCWLYM_ 0 0 0 REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|100|1|anti-sense REV__L1MA4A_dup3316|chr9:99209688-99212837:-|1.2037411213126017|0.1721015644293133|2.81|151.0|100|1|anti-sense MSMS UPN48_class_I_Rep_2 6 633.7761840820312 2 633.775362 1265.53617 NaN NaN NaN NaN NaN NaN NaN 22.885 1 26.528 26.028 27.028 3.6432 0 0 0 0.40038 1 2406 2406 0.6015 0 1 + 11692 25280 7263 7269 14604 14604 -0.08597556789254668 HEWYLRKF 8 Unmodified _HEWYLRKF_ 0 0 0 ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENSG00000145545|ENST00000274192|SRD5A1 ENST00000513117.1_1_5:6633573-6668378:+|nuORF ENST00000513117.1_1_5:6633573-6668378:+|nuORF MSMS UPN48_class_I_Rep_1 5 589.8102416992188 2 589.808908 1177.60326 NaN NaN NaN NaN NaN NaN NaN 32.6 1 36.127 35.627 36.627 3.5266 0 0 0 0.40746 1 4976 4976 0.69038 0.088878 1 11693 3399 7264 7270 14605 14605 0.02156557808348225 HFACAGPP 8 Unmodified _HFACAGPP_ 0 0 0 ENSG00000183153|ENST00000578689|GJD3;nc|ENSG00000183153|Q8N144-2|GJD3 ENSG00000183153|ENST00000578689|GJD3 ENSG00000183153|ENST00000578689|GJD3 MULTI-MSMS UPN48_class_I_Rep_1 5 400.18011474609375 2 400.181423 798.348294 -0.14471 -5.791E-05 -0.44519 -0.00017816 -0.5899 -0.00023607 400.181096574557 109.16 0.18263 112.8 112.69 112.87 3.6321 35 21 2 0 0 0 0.82752 1 26507 26507 0.79363 0.79363 1 1082500 11694 4986 7265 7271 14606 14606 -0.05894626931512903 HFACAGPP 8 Unmodified _HFACAGPP_ 0 0 0 ENSG00000183153|ENST00000578689|GJD3;nc|ENSG00000183153|Q8N144-2|GJD3 ENSG00000183153|ENST00000578689|GJD3 ENSG00000183153|ENST00000578689|GJD3 MULTI-MSMS UPN48_class_I_Rep_3 7 400.1813049316406 2 400.181423 798.348294 0.096579 3.8649E-05 -0.36225 -0.00014497 -0.26567 -0.00010632 400.18112472784037 109.15 0.17342 112.82 112.75 112.92 3.6751 33 23 2 0 0 0 0.82752 1 25892 25892 0.79363 0.79363 1 858000 11695 4986 7265 7271 14607 14607 -0.05894626931512903 HFAHLIFH 8 Unmodified _HFAHLIFH_ 0 0 0 L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|305|2|anti-sense L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|305|2|anti-sense L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|305|2|anti-sense MSMS UPN47_class_I_Rep_3 4 511.27215576171875 2 511.271961 1020.52937 NaN NaN NaN NaN NaN NaN NaN 51.189 1 54.405 53.905 54.905 3.2163 0 0 0 0.40738 1 11371 11371 0.79363 0 1 11696 14306 7266 7272 14608 14608 0.01992634436703611 HFALTPAFASL 11 Unmodified _HFALTPAFASL_ 0 0 0 ENSG00000184178.16,SCFD2,chr4,-,I4.1,53273588,53273825|87|7.9|1|intron;ENSG00000184178.16,SCFD2,chr4,-,I4.1,53273588,53273825|87|7.9|2|intron;nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2 ENSG00000184178.16,SCFD2,chr4,-,I4.1,53273588,53273825|87|7.9|1|intron ENSG00000184178.16,SCFD2,chr4,-,I4.1,53273588,53273825|87|7.9|1|intron MSMS UPN48_class_I_Rep_1 5 587.8157958984375 2 587.816399 1173.61824 NaN NaN NaN NaN NaN NaN NaN 48.743 1 52.267 51.767 52.767 3.5239 0 0 0 0.38417 1 9776 9776 1.1933 0.50296 1 11697 5038 7267 7273 14609 14609 0.038380048857106885 HFANMRSL 8 Unmodified _HFANMRSL_ 0 0 0 ENST00000572841.1_1_17:2279931-2282811:+|nuORF;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1 ENST00000572841.1_1_17:2279931-2282811:+|nuORF ENST00000572841.1_1_17:2279931-2282811:+|nuORF MSMS UPN47_class_I_Rep_1 2 488.2431640625 2 488.245086 974.47562 NaN NaN NaN NaN NaN NaN NaN 27.377 1 31.143 30.643 31.643 3.7662 0 0 0 0.4044 1 4062 4062 4.756 0.42677 1 11698 3210 7268 7274 14610 14610 -0.01263906057317854 HFAQGQWVK 9 Unmodified _HFAQGQWVK_ 0 0 0 REV__ENSG00000174106|ENST00000308330|LEMD3 REV__ENSG00000174106|ENST00000308330|LEMD3 MSMS UPN47_class_I_Rep_2 3 550.7881469726562 2 550.785433 1099.55631 NaN NaN NaN NaN NaN NaN NaN 29.146 1 32.638 32.138 33.138 3.4923 0 0 0 0.39518 1 4626 4626 1.8442 0.36234 1 + 11699 20507 7269 7275 14611 14611 0.010516982572426059 HFAYALEI 8 Unmodified _HFAYALEI_ 0 0 0 THE1A-int_dup305|chr3:111582892-111584470:-|1.812609104502482|0.0904960761083711|4.32|147.0|6|1|sense THE1A-int_dup305|chr3:111582892-111584470:-|1.812609104502482|0.0904960761083711|4.32|147.0|6|1|sense THE1A-int_dup305|chr3:111582892-111584470:-|1.812609104502482|0.0904960761083711|4.32|147.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 482.25048828125 2 482.25036 962.486168 NaN NaN NaN NaN NaN NaN NaN 61.583 1 65.057 64.557 65.557 3.4738 0 0 0 0.40404 1 13692 13692 5.2307 0.47466 1 11700 32869 7270 7276 14612 14612 0.0034239986873672024 HFAYFQFP 8 Unmodified _HFAYFQFP_ 0 0 0 REV__L1M5_dup21567|chr6:143954668-143954915:+|1.2886247551774044|0.1450305327861062|3.15|150.0|14|1|anti-sense REV__L1M5_dup21567|chr6:143954668-143954915:+|1.2886247551774044|0.1450305327861062|3.15|150.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 528.7509765625 2 528.750527 1055.4865 NaN NaN NaN NaN NaN NaN NaN 114.85 1 118.43 117.93 118.93 3.5809 0 0 0 0.40738 1 28394 28394 0.79363 0 1 + 11701 24634 7271 7277 14613 14613 -0.03902180411387235 HFCDIMQFH 9 Unmodified _HFCDIMQFH_ 0 0 0 REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|51|2|anti-sense REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_1 2 589.2474365234375 2 589.249511 1176.48447 NaN NaN NaN NaN NaN NaN NaN 31.627 1 35.356 34.856 35.856 3.7293 0 0 0 0.39428 1 5333 5333 2.0598 0.21551 1 + 11702 28381 7272 7278 14614 14614 -0.09671300483159939 HFCETLEQTK 10 Unmodified _HFCETLEQTK_ 0 0 0 L1ME1_dup27250|chr17:10082384-10083164:+|1.241077862161161|0.0044947418184137|8.11|150.0|21|3|sense L1ME1_dup27250|chr17:10082384-10083164:+|1.241077862161161|0.0044947418184137|8.11|150.0|21|3|sense L1ME1_dup27250|chr17:10082384-10083164:+|1.241077862161161|0.0044947418184137|8.11|150.0|21|3|sense MSMS UPN48_class_I_Rep_3 7 618.2926635742188 2 618.289888 1234.56522 NaN NaN NaN NaN NaN NaN NaN 31.585 1 35.287 34.787 35.787 3.7015 0 0 0 0.53105 1 4694 4694 1.6526 1.0511 1 11703 12352 7273 7279 14615 14615 -0.0426774095926703 HFCKLLKAA 9 Unmodified _HFCKLLKAA_ 0 0 0 MLT1F1_dup2588|chr15:64661898-64662350:-|2.1661767428165817|0.0131348268874733|7.37|151.0|22|1|anti-sense MLT1F1_dup2588|chr15:64661898-64662350:-|2.1661767428165817|0.0131348268874733|7.37|151.0|22|1|anti-sense MLT1F1_dup2588|chr15:64661898-64662350:-|2.1661767428165817|0.0131348268874733|7.37|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 515.4608154296875 2 515.796955 1029.57936 NaN NaN NaN NaN NaN NaN NaN 32.858 1 36.548 36.048 37.048 3.6896 0 0 0 0.4007 1 5037 5037 0.52476 0 1 11704 16386 7274 7280 14616 14616 0.06575001050350693 HFCKVHCP 8 Unmodified _HFCKVHCP_ 0 0 0 REV__nc|ENSG00000099139|Q92824|PCSK5 REV__nc|ENSG00000099139|Q92824|PCSK5 MULTI-MSMS UPN47_class_I_Rep_3 4 485.7223205566406 2 485.722933 969.431312 -0.54148 -0.00026301 -0.63514 -0.0003085 -1.1766 -0.00057151 485.722629376407 26.133 0.76228 29.481 29.236 29.998 3.3478 125 70 2 0 0 0 0.82752 1 3841 3841 5.2307 0.90143 1 96544 + 11705 18061 7275 7281 14617 14617 -0.054626334751560535 HFCLRGFAYS 10 Unmodified _HFCLRGFAYS_ 0 0 0 L1MB7_dup8790|chr7:75093409-75093893:-|3.366138824681661|0.4657932346929599|2.85|151.0|23|2|anti-sense;L1MB7_dup8788|chr7:74850248-74850732:+|2.2435571780451893|0.2713336067266699|3.05|151.0|23|2|anti-sense L1MB7_dup8790|chr7:75093409-75093893:-|3.366138824681661|0.4657932346929599|2.85|151.0|23|2|anti-sense L1MB7_dup8790|chr7:75093409-75093893:-|3.366138824681661|0.4657932346929599|2.85|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_3 4 600.7845458984375 2 600.784576 1199.5546 NaN NaN NaN NaN NaN NaN NaN 80.78 1 84.089 83.589 84.589 3.309 0 0 0 0.53105 1 20205 20205 6.2058 0.47393 1 11706 10884 7276 7282 14618 14618 -0.037196788230176026 HFCQGIKY 8 Unmodified _HFCQGIKY_ 0 0 0 ERV3-16A3_I-int_dup872|chr2:199772560-199775177:-|1.035818197785191|0.0952928295652798|3.44|149.0|171|3|anti-sense ERV3-16A3_I-int_dup872|chr2:199772560-199775177:-|1.035818197785191|0.0952928295652798|3.44|149.0|171|3|anti-sense ERV3-16A3_I-int_dup872|chr2:199772560-199775177:-|1.035818197785191|0.0952928295652798|3.44|149.0|171|3|anti-sense MSMS UPN47_class_I_Rep_3 4 498.2203674316406 2 498.242012 994.469472 NaN NaN NaN NaN NaN NaN NaN 32.615 1 35.901 35.401 36.401 3.2867 0 0 0 0.40625 1 5714 5714 2.3027 0 1 11707 7713 7277 7283 14619 14619 -0.02798424288835122 HFDFCLIHLY 10 Unmodified _HFDFCLIHLY_ 0 0 0 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|8|intron ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|8|intron ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|8|intron MULTI-MSMS UPN47_class_I_Rep_2 3 436.87921142578125 3 436.546231 1306.61686 -0.74202 -0.00032393 0.78263 0.00034166 0.040616 1.7731E-05 436.87918521494237 18.451 0.76522 21.841 21.679 22.445 3.3898 117 84 2 0 0 0 0.56433 1 1538 1538 0.77653 0 1 50162 11708 4317 7278 7284 14620 14620 -0.024179524746841707 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 485.7222595214844 2 485.722498 969.430444 0.031038 1.5076E-05 -0.17249 -8.3781E-05 -0.14145 -6.8705E-05 485.7223159158212 30.468 0.71679 30.468 30.114 30.831 0 80 56 2 0 0 0 0.28552 1 4958 4958 14.838 3.198 1 99703 + 11709 5235 7279 7285 14621 14621 -0.05549433318844876 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_1 2 485.7226867675781 2 485.722498 969.430444 -0.32431 -0.00015752 0.55341 0.00026881 0.2291 0.00011128 485.72266408392267 25.803 0.71147 29.566 29.246 29.958 3.7624 95 63 3 0 0 0 0.09884 4 3597 3522;3559;3597;3633 34.102 13.759 1 84958 + 11710 5235 7279 7285 14622;14623;14624;14625 14624 -0.05549433318844876 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_2 3 485.7228698730469 2 485.722498 969.430444 -0.16099 -7.8196E-05 -0.081721 -3.9694E-05 -0.24271 -0.00011789 485.72243043327273 25.87 0.67537 29.365 29.175 29.85 3.4945 94 61 2 0 0 0 0.074367 4 3630 3630;3668;3704;3740 39.957 16.809 1 113140 + 11711 5235 7279 7285 14626;14627;14628;14629 14626 -0.05549433318844876 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_3 4 485.7220458984375 2 485.722498 969.430444 -0.54148 -0.00026301 0.25878 0.0001257 -0.2827 -0.00013731 485.722629376407 26.133 0.76228 29.481 29.236 29.998 3.3478 125 70 2 0 0 0 0.0081951 3 3805 3734;3769;3805 71.134 37.031 1 96544 + 11712 5235 7279 7285 14630;14631;14632 14632 -0.05549433318844876 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 485.72216796875 2 485.722498 969.430444 0.2246 0.00010909 -0.4647 -0.00022572 -0.2401 -0.00011662 485.7222666853867 26.29 0.42688 29.856 29.649 30.076 3.5667 64 44 2 0 0 0 0.11683 2 3208 3173;3208 30.637 18.996 1 70825 + 11713 5235 7279 7285 14633;14634 14634 -0.05549433318844876 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 485.7231750488281 2 485.722498 969.430444 0.28619 0.00013901 -0.38781 -0.00018837 -0.10162 -4.9358E-05 485.7222330951533 26.343 0.47909 29.976 29.727 30.206 3.6332 84 55 2 0 0 0 0.047711 3 3341 3320;3341;3375 49.933 29.479 1 91849 + 11714 5235 7279 7285 14635;14636;14637 14636 -0.05549433318844876 HFDLSHGSA 9 Unmodified _HFDLSHGSA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 485.72235107421875 2 485.722498 969.430444 0.12389 6.0174E-05 -0.40188 -0.0001952 -0.27799 -0.00013503 485.72229801339364 26.233 0.54461 29.999 29.728 30.273 3.7663 92 66 2 0 0 0 0.20276 3 3264 3264;3298;3327 20.454 8.8133 1 76054 + 11715 5235 7279 7285 14638;14639;14640 14638 -0.05549433318844876 HFEETTAL 8 Unmodified _HFEETTAL_ 0 0 0 ENST00000496563.1_1_3:44598878-44609942:+|nuORF;nc|ENSG00000196345|Q9P0L1-2|ZKSCAN7;ENSG00000196345|ENST00000426540|ZKSCAN7 ENST00000496563.1_1_3:44598878-44609942:+|nuORF ENST00000496563.1_1_3:44598878-44609942:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 474.2823181152344 2 474.227082 946.439611 0.23263 0.00011032 -0.72972 -0.00034605 -0.4971 -0.00023574 474.2266566821504 109.19 0.16187 112.8 112.68 112.84 3.6046 18 16 2 0 0 0 0.72333 1 26890 26890 2.3027 0 1 860100 11716 5297 7280 7286 14641 14641 -0.03575084753208557 HFEIKCYQCC 10 Unmodified _HFEIKCYQCC_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3 REV__nc|ENSG00000182670|P53804-3|TTC3 MSMS UPN47_class_I_Rep_3 4 637.2623291015625 2 637.261761 1272.50897 NaN NaN NaN NaN NaN NaN NaN 52.277 1 55.483 54.983 55.983 3.2055 0 0 0 0.53105 1 11704 11704 0.40072 0 1 + 11717 20761 7281 7287 14642 14642 -0.11638408391945632 HFEQPFDY 8 Unmodified _HFEQPFDY_ 0 0 0 REV__nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L REV__nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L MSMS UPN48_class_I_Rep_1 5 541.7677001953125 2 541.732532 1081.45051 NaN NaN NaN NaN NaN NaN NaN 119.6 1 123.22 122.72 123.72 3.6189 0 0 0 0.4044 1 29193 29193 4.756 0 1 + 11718 20151 7282 7288 14643 14643 -0.08695682378902347 HFEYFMLW 8 Unmodified _HFEYFMLW_ 0 0 0 REV__L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|24|2|sense REV__L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|24|2|sense MSMS UPN47_class_I_Rep_2 3 586.7650146484375 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 19.717 1 23.114 22.614 23.614 3.3963 0 0 0 0.40738 1 1913 1913 0.79363 0 1 + 11719 25987 7283 7289 14644 14644 -0.06280984457544037 HFEYVILLT 9 Unmodified _HFEYVILLT_ 0 0 0 L1M4b_dup2829|chr10:11308003-11308589:-|1.5607271435976375|0.0166846188450984|6.55|151.0|33|2|anti-sense L1M4b_dup2829|chr10:11308003-11308589:-|1.5607271435976375|0.0166846188450984|6.55|151.0|33|2|anti-sense L1M4b_dup2829|chr10:11308003-11308589:-|1.5607271435976375|0.0166846188450984|6.55|151.0|33|2|anti-sense MSMS UPN48_class_I_Rep_2 6 567.8125610351562 2 567.813325 1133.6121 NaN NaN NaN NaN NaN NaN NaN 21.434 1 25.08 24.58 25.58 3.6459 0 0 0 0.39428 1 2022 2022 2.0598 0 1 11720 8999 7284 7290 14645 14645 0.050634866541713563 HFFANLAF 8 Unmodified _HFFANLAF_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 483.7449951171875 2 483.745245 965.475937 0.13529 6.5446E-05 -0.50353 -0.00024358 -0.36824 -0.00017813 483.74487595666193 44.449 0.61244 47.962 47.684 48.296 3.5132 77 42 2 0 0 0 0.82752 1 8481 8481 19.439 0 1 217040 + 11721 30311 7285 7291 14646 14646 -0.008181630658327776 HFFANLAF 8 Unmodified _HFFANLAF_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.2638854980469 2 483.745245 965.475937 0.16657 8.0579E-05 -0.53077 -0.00025676 -0.3642 -0.00017618 483.74481091234304 44.171 0.81085 47.933 47.634 48.445 3.7617 97 58 2 0 0 0 0.82752 2 8376 8376;8415 26.341 0 1 203740 + 11722 30311 7285 7291 14647;14648 14647 -0.008181630658327776 HFFANLAF 8 Unmodified _HFFANLAF_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 484.2638854980469 2 483.745245 965.475937 0.16657 8.0579E-05 -0.53077 -0.00025676 -0.3642 -0.00017618 483.74481091234304 44.171 0.81085 47.933 47.634 48.445 3.7617 97 58 2 0 0 0 0.72333 1 8376 8376 26.341 0 1 203740 + 11723 30311 7285 7291 14649 14649 -0.008181630658327776 HFFANLAF 8 Unmodified _HFFANLAF_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|352|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 483.7449951171875 2 483.745245 965.475937 0.1469 7.106E-05 -0.38699 -0.0001872 -0.24009 -0.00011614 483.7449030350459 44.273 0.71489 47.91 47.628 48.343 3.6372 82 49 2 0 0 0 0.82752 1 8382 8382 19.439 0 1 164210 + 11724 30311 7285 7291 14650 14650 -0.008181630658327776 HFFCHFNH 8 Unmodified _HFFCHFNH_ 0 0 0 L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|220|1|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|220|1|anti-sense L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|220|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.2574462890625 2 544.729603 1087.44465 NaN NaN NaN NaN NaN NaN NaN 119.18 1 122.8 122.3 123.3 3.6189 0 0 0 0.40738 1 29081 29081 0.79363 0 1 11725 14549 7286 7292 14651 14651 -0.09557059371559262 HFFESYKQY 9 Unmodified _HFFESYKQY_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS UPN46_class_I_Rep_3 1 416.8602600097656 3 416.860984 1247.56112 -0.16933 -7.0587E-05 -0.79159 -0.00032998 -0.96092 -0.00040057 416.86059436378645 30.332 0.60433 30.332 30.001 30.606 0 73 48 2 0 0 0 0.46434 1 4954 4954 2.4985 0.21571 1 95400 + 11726 20254 7287 7293 14652 14652 -0.052754623906594134 HFFESYKQY 9 Unmodified _HFFESYKQY_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MULTI-MATCH UPN48_class_I_Rep_1 5 3 416.860984 1247.56112 -0.048782 -2.0335E-05 0.61285 0.00025547 0.56407 0.00023514 417.1956805604647 26.927 0.05319 30.49 30.441 30.495 3.5629 0.078956 0.0016913 NaN 2.4985 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 24424 + 11727 20254 7287 7293 -0.052754623906594134 HFFFEMSI 8 Unmodified _HFFFEMSI_ 0 0 0 REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|263|2|anti-sense REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|263|2|anti-sense MSMS UPN48_class_I_Rep_1 5 529.2424926757812 2 529.244221 1056.47389 NaN NaN NaN NaN NaN NaN NaN 78.426 1 81.961 81.461 82.461 3.5352 0 0 0 0.40625 1 18706 18706 2.3027 1.5091 1 + 11728 30204 7288 7294 14653 14653 -0.05208959865922225 HFFGDDSH 8 Unmodified _HFFGDDSH_ 0 0 0 REV__L1PA8_dup6025|chr12:107082036-107085835:+|1.0853707154906211|0.027626641533181|5.3|149.0|165|2|anti-sense REV__L1PA8_dup6025|chr12:107082036-107085835:+|1.0853707154906211|0.027626641533181|5.3|149.0|165|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 481.19317626953125 2 481.193574 960.372594 0.11549 5.5572E-05 -1.218 -0.0005861 -1.1025 -0.00053052 481.1931011423385 46.851 0.37829 50.37 50.152 50.53 3.5192 28 25 2 0 0 0 0.82752 1 9213 9213 0.79363 0 1 62500 + 11729 30242 7289 7295 14654 14654 -0.10917695244279457 HFFPHWLLY 9 Unmodified _HFFPHWLLY_ 0 0 0 ENSG00000180998|ENST00000321662|GPR137C ENSG00000180998|ENST00000321662|GPR137C ENSG00000180998|ENST00000321662|GPR137C MSMS UPN48_class_I_Rep_1 5 630.3215942382812 2 630.321651 1258.62875 NaN NaN NaN NaN NaN NaN NaN 62.6 1 66.063 65.563 66.563 3.4625 0 0 0 0.40038 1 14024 14024 0.6015 0 1 11730 4905 7290 7296 14655 14655 0.009780323307950312 HFHAHGPV 8 Unmodified _HFHAHGPV_ 0 0 0 ENSG00000124313|ENST00000642864|IQSEC2 ENSG00000124313|ENST00000642864|IQSEC2 ENSG00000124313|ENST00000642864|IQSEC2 MSMS UPN47_class_I_Rep_1 2 451.2264404296875 2 451.225011 900.435469 NaN NaN NaN NaN NaN NaN NaN 33.959 1 37.658 37.158 38.158 3.6983 0 0 0 0.40738 1 6048 6048 0.79363 0 1 11731 2460 7291 7297 14656 14656 -0.01873084665578517 HFHCKYKS 8 Unmodified _HFHCKYKS_ 0 0 0 REV__L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|47|3|sense REV__L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|47|3|sense MSMS UPN47_class_I_Rep_2 3 525.2529296875 2 525.252911 1048.49127 NaN NaN NaN NaN NaN NaN NaN 31.955 1 35.424 34.924 35.924 3.4691 0 0 0 0.40738 1 5476 5476 0.79363 0 1 + 11732 25513 7292 7298 14657 14657 -0.03103619540274849 HFHFHQFF 8 Unmodified _HFHFHQFF_ 0 0 0 REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|83|2|anti-sense REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|83|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.7677612304688 2 573.767043 1145.51953 NaN NaN NaN NaN NaN NaN NaN 15.434 1 18.952 18.452 19.452 3.5184 0 0 0 0.40798 1 608 608 0 0 1 + 11733 28723 7293 7299 14658 14658 -0.04740553568672112 HFHHHQLY 8 Unmodified _HFHHHQLY_ 0 0 0 REV__ENST00000481263.1_1_22:40362084-40364372:+|nuORF REV__ENST00000481263.1_1_22:40362084-40364372:+|nuORF MSMS UPN47_class_I_Rep_1 2 559.7667846679688 2 559.767575 1117.5206 NaN NaN NaN NaN NaN NaN NaN 77.87 1 81.299 80.799 81.799 3.4289 0 0 0 0.40581 1 19338 19338 2.8892 0.31174 1 + 11734 18109 7294 7300 14659 14659 -0.0334633919976568 HFHHHQLY 8 Unmodified _HFHHHQLY_ 0 0 0 REV__ENST00000481263.1_1_22:40362084-40364372:+|nuORF REV__ENST00000481263.1_1_22:40362084-40364372:+|nuORF MSMS UPN48_class_I_Rep_2 6 559.7701416015625 2 559.767575 1117.5206 NaN NaN NaN NaN NaN NaN NaN 19.017 1 22.668 22.168 23.168 3.6509 0 0 0 0.40604 1 1375 1375 2.5775 0.51773 1 + 11735 18109 7294 7300 14660 14660 -0.0334633919976568 HFHKAPQL 8 Unmodified _HFHKAPQL_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|97|3|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|97|3|sense MSMS UPN47_class_I_Rep_3 4 489.2685546875 2 489.269419 976.524284 NaN NaN NaN NaN NaN NaN NaN 35.438 1 38.693 38.193 39.193 3.2547 0 0 0 0.40746 1 6564 6564 0.69038 0 1 + 11736 23836 7295 7301 14661 14661 0.03508330574084084 HFHRKKKKLYL 11 Unmodified _HFHRKKKKLYL_ 0 0 0 L1MEd_dup19446|chr17:76426301-76427135:-|1.3707368696299342|0.0209400837884184|6.03|151.0|13|2|sense L1MEd_dup19446|chr17:76426301-76427135:-|1.3707368696299342|0.0209400837884184|6.03|151.0|13|2|sense L1MEd_dup19446|chr17:76426301-76427135:-|1.3707368696299342|0.0209400837884184|6.03|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 500.0782775878906 3 499.977017 1496.90922 NaN NaN NaN NaN NaN NaN NaN 39.148 1 42.653 42.153 43.153 3.5048 0 0 0 0.38417 1 6876 6876 0.094841 0 1 11737 13194 7296 7302 14662 14662 0.18064368321461188 HFHTADKD 8 Unmodified _HFHTADKD_ 0 0 0 THE1B_dup15970|chr11:73067833-73068194:-|1.381449836339638|0.0056285239217451|7.94|150.0|21|2|anti-sense;THE1A_dup2180|chr8:65744926-65745284:+|2.014281946806449|0.0954626037854934|4.4|150.0|17|2|anti-sense;THE1B_dup10923|chr8:27352571-27352924:+|2.372965325835165|0.0354983283628548|6.06|151.0|23|2|anti-sense;THE1B_dup20241|chr17:18536939-18537305:-|1.8437393984984585|0.357231515419544|2.37|148.0|21|2|anti-sense THE1B_dup15970|chr11:73067833-73068194:-|1.381449836339638|0.0056285239217451|7.94|150.0|21|2|anti-sense THE1B_dup15970|chr11:73067833-73068194:-|1.381449836339638|0.0056285239217451|7.94|150.0|21|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 485.7220153808594 2 485.722498 969.430444 0.2246 0.00010909 -0.4647 -0.00022572 -0.2401 -0.00011662 485.7222666853867 26.29 0.42688 29.856 29.649 30.076 3.5667 64 44 2 0 0 0 0.82752 1 3244 3244 4.3292 0 1 70825 11738 32860 7297 7303 14663 14663 -0.05549433318867614 HFHVDKDY 8 Unmodified _HFHVDKDY_ 0 0 0 REV__L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|15|1|sense REV__L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 530.7574462890625 2 530.745973 1059.47739 NaN NaN NaN NaN NaN NaN NaN 117.71 1 117.71 117.21 118.21 0 0 0 0 0.40738 1 29187 29187 0.79363 0 1 + 11739 30463 7298 7304 14664 14664 -0.04996573767721202 HFHVIQWK 8 Unmodified _HFHVIQWK_ 0 0 0 REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF MSMS UPN48_class_I_Rep_1 5 547.7998657226562 2 547.798343 1093.58213 NaN NaN NaN NaN NaN NaN NaN 32.863 1 36.389 35.889 36.889 3.5266 0 0 0 0.40581 1 5051 5051 2.8892 0.58649 1 + 11740 17807 7299 7305 14665 14665 0.03908592499487895 HFHWYRCW 8 Unmodified _HFHWYRCW_ 0 0 0 L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|12|1|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|12|1|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 617.7718505859375 2 617.771803 1233.52905 NaN NaN NaN NaN NaN NaN NaN 23.61 1 27.249 26.749 27.749 3.6397 0 0 0 0.40738 1 2605 2605 0.79363 0.10326 1 11741 15205 7300 7306 14666 14666 -0.07837108554804217 HFIDGFNEEK 10 Unmodified _HFIDGFNEEK_ 0 0 0 ENST00000481163.1_1_6:106546960-106547465:+|nuORF;PRDM1|p.Q634Rfs*41|1|0.09|ENSG00000057657|chr6:106106496-106106496|C/-|frameshift_variant;nc|ENSG00000057657|O75626-3|PRDM1;nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1 ENST00000481163.1_1_6:106546960-106547465:+|nuORF ENST00000481163.1_1_6:106546960-106547465:+|nuORF MSMS UPN47_class_I_Rep_1 2 618.287841796875 2 618.288202 1234.56185 NaN NaN NaN NaN NaN NaN NaN 27.55 1 31.316 30.816 31.816 3.7662 0 0 0 0.53105 1 4116 4116 1.6526 0 1 11742 953 7301 7307 14667 14667 -0.046046677416370585 HFIIELALC 9 Unmodified _HFIIELALC_ 0 0 0 MER47A_dup1611|chr10:74992306-74992647:-|1.3315789136833178|0.01999779772646|6.06|151.0|12|3|sense MER47A_dup1611|chr10:74992306-74992647:-|1.3315789136833178|0.01999779772646|6.06|151.0|12|3|sense MER47A_dup1611|chr10:74992306-74992647:-|1.3315789136833178|0.01999779772646|6.06|151.0|12|3|sense MSMS UPN48_class_I_Rep_2 6 529.7892456054688 2 529.788795 1057.56304 NaN NaN NaN NaN NaN NaN NaN 27.257 1 30.888 30.388 31.388 3.6311 0 0 0 0.38299 1 3586 3586 4.756 0 1 11743 16001 7302 7308 14668 14668 0.03655875093591021 HFKKAIQK 8 Unmodified _HFKKAIQK_ 0 0 0 Tigger4_dup987|chr10:96851442-96852134:+|1.4299996236717656|0.006758416734969|7.73|151.0|3|1|sense Tigger4_dup987|chr10:96851442-96852134:+|1.4299996236717656|0.006758416734969|7.73|151.0|3|1|sense Tigger4_dup987|chr10:96851442-96852134:+|1.4299996236717656|0.006758416734969|7.73|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 500.3081359863281 2 500.308544 998.602535 NaN NaN NaN NaN NaN NaN NaN 69.93 1 73.389 72.889 73.889 3.4598 0 0 0 0.40625 1 16258 16258 2.3027 0 1 11744 33434 7303 7309 14669 14669 0.10317763159309834 HFKRKIKVPAK 11 Unmodified _HFKRKIKVPAK_ 0 0 0 HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|15|1|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|15|1|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 451.2952575683594 3 451.294346 1350.86121 NaN NaN NaN NaN NaN NaN NaN 63.001 1 66.36 65.86 66.86 3.3595 0 0 0 0.38417 1 14881 14881 0.094841 0.011491 1 11745 8319 7304 7310 14670 14670 0.19981294401395644 HFKWEQIPL 9 Unmodified _HFKWEQIPL_ 0 0 0 nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 MSMS UPN48_class_I_Rep_1 5 599.774169921875 2 599.324391 1196.63423 NaN NaN NaN NaN NaN NaN NaN 56.514 1 60.015 59.515 60.515 3.5014 0 0 0 0.39518 1 12167 12167 1.8442 0.19162 1 11746 1523 7305 7311 14671 14671 0.0437771112262908 HFLAKKKV 8 Unmodified _HFLAKKKV_ 0 0 0 Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|71|3|sense Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|71|3|sense Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|71|3|sense MSMS UPN48_class_I_Rep_1 5 485.812255859375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 74.35 1 77.84 77.34 78.34 3.49 0 0 0 0.40738 1 17565 17565 0.79363 0 1 11747 32981 7306 7312 14672 14672 0.12634951164704944 HFLFCWVML 9 Unmodified _HFLFCWVML_ 0 0 0 Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|24|3|sense Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|24|3|sense Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|24|3|sense MSMS UPN48_class_I_Rep_1 5 598.2902221679688 2 598.293191 1194.57183 NaN NaN NaN NaN NaN NaN NaN 38.097 1 41.602 41.102 42.102 3.5052 0 0 0 0.3264 1 6557 6557 9.3474 3.6156 1 11748 409 7307 7313 14673 14673 -0.017674745415888538 HFLFKRRS 8 Unmodified _HFLFKRRS_ 0 0 0 ENST00000418559.5_1_2:183594660-183605065:+|nuORF ENST00000418559.5_1_2:183594660-183605065:+|nuORF ENST00000418559.5_1_2:183594660-183605065:+|nuORF MSMS UPN48_class_I_Rep_3 7 545.81884765625 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 116.65 1 120.28 119.78 120.78 3.6312 0 0 0 0.40738 1 27762 27762 0.79363 0.10326 1 11749 6668 7308 7314 14674 14674 0.07835683765119938 HFLGIVFH 8 Unmodified _HFLGIVFH_ 0 0 0 REV__L1MB3_dup4067|chr4:39965471-39965967:+|1.5667298729252923|0.0017399122846006|9.81|151.0|30|2|anti-sense REV__L1MB3_dup4067|chr4:39965471-39965967:+|1.5667298729252923|0.0017399122846006|9.81|151.0|30|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.2846374511719 2 485.268887 968.523222 NaN NaN NaN NaN NaN NaN NaN 42.682 1 46.44 45.94 46.94 3.7579 0 0 0 0.40581 1 7931 7931 2.8892 0 1 + 11750 25701 7309 7315 14675 14675 0.03770116205191698 HFLKKLKIEL 10 Unmodified _HFLKKLKIEL_ 0 0 0 L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 634.3775024414062 2 634.908091 1267.80163 0.56725 0.00036015 -0.25837 -0.00016404 0.30887 0.00019611 634.9077650329066 103.47 0.089409 107.25 107.19 107.28 3.7788 13 12 2 0 0 0 0.84575 1 25431 25431 3.5965 0 1 3015900 11751 9915 7310 7316 14676 14676 0.17843978667337979 HFLKKLKIEL 10 Unmodified _HFLKKLKIEL_ 0 0 0 L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 634.908091 1267.80163 0.62067 0.00039407 -0.017319 -1.0996E-05 0.60335 0.00038307 635.4098047484208 103.48 0.059593 107.22 107.2 107.26 3.7434 0.031207 -0.00020009 NaN 3.5965 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 9345400 11752 9915 7310 7316 0.17843978667337979 HFLLHPKV 8 Unmodified _HFLLHPKV_ 0 0 0 ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|5|intron;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|5|intron ENSG00000176225.15,RTTN,chr18,-,I55.1,70019921,70020614|27|4.05|5|intron MSMS UPN47_class_I_Rep_3 4 495.79638671875 2 495.797812 989.581071 NaN NaN NaN NaN NaN NaN NaN 49.098 1 52.333 51.833 52.833 3.2345 0 0 0 0.40738 1 10733 10733 0.79363 0 1 11753 4753 7311 7317 14677 14677 0.08586378130610228 HFLMAQLY 8 Unmodified _HFLMAQLY_ 0 0 0 L1MA2_dup5722|chr12:11042929-11045574:+|1.8624851693326208|0.1641776865214716|3.5|151.0|130|2|anti-sense L1MA2_dup5722|chr12:11042929-11045574:+|1.8624851693326208|0.1641776865214716|3.5|151.0|130|2|anti-sense L1MA2_dup5722|chr12:11042929-11045574:+|1.8624851693326208|0.1641776865214716|3.5|151.0|130|2|anti-sense MSMS UPN48_class_I_Rep_3 7 511.76116943359375 2 511.760038 1021.50552 NaN NaN NaN NaN NaN NaN NaN 60.426 1 63.942 63.442 64.442 3.5169 0 0 0 0.40404 1 13274 13274 5.2307 0 1 11754 9410 7312 7318 14678 14678 -0.004369671120002749 HFLMWLSFTC 10 Unmodified _HFLMWLSFTC_ 0 0 0 L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|60|1|anti-sense L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|60|1|anti-sense L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_3 4 642.79736328125 2 642.798837 1283.58312 NaN NaN NaN NaN NaN NaN NaN 53.785 1 56.98 56.48 57.48 3.1948 0 0 0 0.53105 1 12160 12160 3.2813 0.28607 1 11755 14033 7313 7319 14679 14679 -0.047326972381142696 HFLPCWVR 8 Unmodified _HFLPCWVR_ 0 0 0 L1MEg_dup6107|chr6:149574901-149575744:-|1.3017668634751127|0.1290387354351912|3.33|151.0|53|3|anti-sense L1MEg_dup6107|chr6:149574901-149575744:-|1.3017668634751127|0.1290387354351912|3.33|151.0|53|3|anti-sense L1MEg_dup6107|chr6:149574901-149575744:-|1.3017668634751127|0.1290387354351912|3.33|151.0|53|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.3212890625 2 529.273647 1056.53274 NaN NaN NaN NaN NaN NaN NaN 34.766 1 38.452 37.952 38.952 3.6859 0 0 0 0.40604 1 6297 6297 2.5775 1.7838 1 11756 13409 7314 7320 14680 14680 0.006735612190368556 HFLSLTKK 8 Unmodified _HFLSLTKK_ 0 0 0 REV__L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|95|1|anti-sense REV__L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|95|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.2934265136719 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 92.865 1 96.744 96.244 97.244 3.8782 0 0 0 0.40738 1 22009 22009 0.79363 0 1 + 11757 30346 7315 7321 14681 14681 0.08826654548113311 HFLSSCMLSVY 11 Unmodified _HFLSSCMLSVY_ 0 0 0 L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 643.7994995117188 2 643.799034 1285.58352 0.5683 0.00036587 -0.12004 -7.7283E-05 0.44826 0.00028859 643.7988290106613 92.015 0.35976 95.72 95.532 95.892 3.7053 69 45 2 0 0 0 0.2836 2 22915 22915;22949 21.537 4.0943 1 265630 11758 14055 7316 7322 14682;14683 14682 -0.047853223089305175 HFLSSCMLSVY 11 Unmodified _HFLSSCMLSVY_ 0 0 0 L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_2 3 643.7992553710938 2 643.799034 1285.58352 NaN NaN NaN NaN NaN NaN NaN 92.112 1 95.577 95.077 96.077 3.4652 0 0 0 0.11455 1 22782 22782 21.537 1.0834 1 11759 14055 7316 7322 14684 14684 -0.047853223089305175 HFLSSCMLSVY 11 Unmodified _HFLSSCMLSVY_ 0 0 0 L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 643.7994384765625 2 643.799034 1285.58352 NaN NaN NaN NaN NaN NaN NaN 92.146 1 95.55 95.05 96.05 3.4034 0 0 0 0.22906 1 23015 23015 16.149 1.3108 1 11760 14055 7316 7322 14685 14685 -0.047853223089305175 HFLSSCMLSVY 11 Unmodified _HFLSSCMLSVY_ 0 0 0 L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 643.7992553710938 2 643.799034 1285.58352 NaN NaN NaN NaN NaN NaN NaN 92.273 1 95.676 95.176 96.176 3.4034 0 0 0 0.064972 1 23045 23045 26.268 2.4784 1 11761 14055 7316 7322 14686 14686 -0.047853223089305175 HFMEIAKLT 9 Unmodified _HFMEIAKLT_ 0 0 0 REV__nc|ENSG00000162390|Q8WXI4|ACOT11 REV__nc|ENSG00000162390|Q8WXI4|ACOT11 MSMS UPN47_class_I_Rep_3 4 545.2927856445312 2 545.291702 1088.56885 NaN NaN NaN NaN NaN NaN NaN 26.726 1 30.074 29.574 30.574 3.3478 0 0 0 0.39428 1 3953 3953 2.0598 0 1 + 11762 32032 7317 7323 14687 14687 0.0281097360525564 HFMFKSATAY 10 Unmodified _HFMFKSATAY_ 0 0 0 REV__L1M5_dup787|chr1:45670027-45670787:-|1.107423614197775|0.0111784732433967|6.63|151.0|37|1|anti-sense REV__L1M5_dup787|chr1:45670027-45670787:-|1.107423614197775|0.0111784732433967|6.63|151.0|37|1|anti-sense MSMS UPN47_class_I_Rep_3 4 602.276123046875 2 601.786784 1201.55902 NaN NaN NaN NaN NaN NaN NaN 53.78 1 56.975 56.475 57.475 3.1948 0 0 0 0.53105 1 12158 12158 6.2058 0.97511 1 + 11763 24708 7318 7324 14688 14688 -0.03370214400115401 HFMYFFVH 8 Unmodified _HFMYFFVH_ 0 0 0 REV__L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|70|1|anti-sense REV__L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2619018554688 2 564.260205 1126.50586 NaN NaN NaN NaN NaN NaN NaN 32.899 1 36.425 35.925 36.925 3.5266 0 0 0 0.40738 1 5062 5062 0.79363 0 1 + 11764 26045 7319 7325 14689 14689 -0.052335473921175435 HFNFLRCR 8 Unmodified _HFNFLRCR_ 0 0 0 REV__L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|197|2|anti-sense REV__L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|197|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7976684570312 2 546.779628 1091.5447 NaN NaN NaN NaN NaN NaN NaN 19.348 1 22.745 22.245 23.245 3.3963 0 0 0 0.40604 1 1806 1806 2.5775 0.51773 1 + 11765 30458 7320 7326 14690 14690 0.002591779622434842 HFNHLRVVYP 10 Unmodified _HFNHLRVVYP_ 0 0 0 REV__ENST00000557758.1_1_14:23391634-23392032:-|nuORF REV__ENST00000557758.1_1_14:23391634-23392032:-|nuORF MSMS UPN48_class_I_Rep_2 6 640.9317016601562 2 641.346189 1280.67783 NaN NaN NaN NaN NaN NaN NaN 53.426 1 57.036 56.536 57.536 3.6098 0 0 0 0.53105 1 11196 11196 1.6526 0 1 + 11766 18114 7321 7327 14691 14691 0.048713206197362524 HFNQRKWR 8 Unmodified _HFNQRKWR_ 0 0 0 REV__ENSG00000146530|ENST00000275358|VWDE REV__ENSG00000146530|ENST00000275358|VWDE MULTI-SECPEP UPN48_class_I_Rep_3 7 585.8135375976562 2 586.315223 1170.61589 0.54493 0.0003195 -0.27189 -0.00015942 0.27303 0.00016008 586.3151444695264 77.133 0.12423 80.735 80.693 80.818 3.6016 12 10 2 0 0 0 0.72333 1 18221 18221 0.69038 0.088878 1 74072 + 11767 19544 7322 7328 14692 14692 0.03741013991270847 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MSMS UPN46_class_I_Rep_3 1 406.68792724609375 2 406.687927 811.361301 NaN NaN NaN NaN NaN NaN NaN 27.315 1 27.315 26.815 27.815 0 0 0 0 0.40472 1 4040 4040 4.3292 2.0265 1 11768 16622 7323 7329 14693 14693 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-SECPEP UPN47_class_I_Rep_1 2 406.58734130859375 2 406.687927 811.361301 -0.49929 -0.00020305 0.12885 5.2403E-05 -0.37043 -0.00015065 406.6878754039894 22.583 0.64745 26.288 25.937 26.585 3.7042 89 61 2 0 0 0 0.72333 1 2735 2735 1.8442 1.0506 1 71337 11769 16622 7323 7329 14694 14694 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS UPN48_class_I_Rep_1 5 406.6875915527344 2 406.687927 811.361301 -0.042635 -1.7339E-05 0.0016585 6.7451E-07 -0.040976 -1.6664E-05 406.68771325489024 23.313 0.38444 26.873 26.734 27.119 3.5605 52 45 2 0 0 0 0.82752 1 2393 2393 4.3292 2.0265 1 40403 11770 16622 7323 7329 14695 14695 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MSMS UPN48_class_I_Rep_2 6 406.68798828125 2 406.687927 811.361301 NaN NaN NaN NaN NaN NaN NaN 23.308 1 26.951 26.451 27.451 3.6432 0 0 0 0.40625 1 2521 2521 2.3027 0 1 11771 16622 7323 7329 14696 14696 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS UPN48_class_I_Rep_3 7 406.68792724609375 2 406.687927 811.361301 -0.016352 -6.6501E-06 -0.39695 -0.00016144 -0.4133 -0.00016809 406.68765888238437 23.13 0.21826 26.881 26.718 26.936 3.7507 25 21 2 0 0 0 0.82752 1 2480 2480 7.9102 2.1497 1 39625 11772 16622 7323 7329 14697 14697 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 406.687927 811.361301 -1.0001 -0.00040671 0.602 0.00024483 -0.39806 -0.00016188 406.68811436096126 22.754 0.66297 26.198 26.015 26.677 3.4447 -0.044553 0.00011848 NaN 1.8442 80 59 2 NaN NaN NaN NaN 0 NaN NaN 0 50111 11773 16622 7323 7329 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MATCH UPN48_class_I_Rep_2 6 2 406.687927 811.361301 0.1393 5.665E-05 -0.37833 -0.00015386 -0.23904 -9.7213E-05 406.6876390298262 23.086 0.33536 26.729 26.545 26.881 3.6432 -0.098477 -0.00010523 NaN 7.9102 42 35 2 NaN NaN NaN NaN 0 NaN NaN 0 30075 11774 16622 7323 7329 -0.05192472547764737 HFPGGPNS 8 Unmodified _HFPGGPNS_ 0 0 0 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 nc|ENSG00000047849|P27816-6|MAP4 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 406.687927 811.361301 -0.016352 -6.6501E-06 -0.39695 -0.00016144 -0.4133 -0.00016809 406.68765888238437 23.13 0.21826 26.881 26.718 26.936 3.7507 0.052876 -0.00012037 NaN 7.9102 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 39625 11775 16622 7323 7329 -0.05192472547764737 HFPITSTCLL 10 Unmodified _HFPITSTCLL_ 0 0 0 REV__ENSG00000198924|ENST00000361384|DCLRE1A REV__ENSG00000198924|ENST00000361384|DCLRE1A MULTI-MSMS UPN47_class_I_Rep_3 4 566.2973022460938 2 566.296985 1130.57942 0.38741 0.00021939 -0.41598 -0.00023557 -0.028571 -1.618E-05 566.2967752397918 56.71 0.36153 59.882 59.655 60.017 3.1721 31 20 2 0 0 0 0.54466 1 13085 13085 6.2058 0.47393 1 82837 + 11776 21165 7324 7330 14698 14698 0.019349562596744363 HFPKLVKHF 9 Unmodified _HFPKLVKHF_ 0 0 0 L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|9|2|sense L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|9|2|sense L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 576.36962890625 2 576.837468 1151.66038 NaN NaN NaN NaN NaN NaN NaN 51.681 1 55.204 54.704 55.704 3.5227 0 0 0 0.39518 1 10683 10683 1.8442 0 1 11777 12791 7325 7331 14699 14699 0.09062025084722336 HFQRKEFF 8 Unmodified _HFQRKEFF_ 0 0 0 nc|ENSG00000138399|Q53R41-2|FASTKD1;ENSG00000138399|ENST00000453153|FASTKD1 nc|ENSG00000138399|Q53R41-2|FASTKD1 nc|ENSG00000138399|Q53R41-2|FASTKD1 MSMS UPN48_class_I_Rep_3 7 569.7907104492188 2 569.793258 1137.57196 NaN NaN NaN NaN NaN NaN NaN 31.378 1 35.08 34.58 35.58 3.7015 0 0 0 0.40604 1 4637 4637 2.5775 0.51773 1 11778 3087 7326 7332 14700 14700 0.008679847742769198 HFQRMNHM 8 Unmodified _HFQRMNHM_ 0 0 0 ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2 ENSG00000198203|ENST00000251481|SULT1C2 ENSG00000198203|ENST00000251481|SULT1C2 MSMS UPN46_class_I_Rep_3 1 550.74853515625 2 550.74747 1099.48039 NaN NaN NaN NaN NaN NaN NaN 77.29 1 77.29 76.79 77.79 0 0 0 0 0.40604 1 18060 18060 2.5775 0 1 11779 5419 7327 7333 14701 14701 -0.06537345186188759 HFRRLKRQ 8 Unmodified _HFRRLKRQ_ 0 0 0 AluJo_dup10622|chr2:168735591-168735910:+|1.1399517640810548|0.0098009675180931|6.86|151.0|7|2|sense AluJo_dup10622|chr2:168735591-168735910:+|1.1399517640810548|0.0098009675180931|6.86|151.0|7|2|sense AluJo_dup10622|chr2:168735591-168735910:+|1.1399517640810548|0.0098009675180931|6.86|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 570.847900390625 2 570.84669 1139.67883 NaN NaN NaN NaN NaN NaN NaN 22.176 1 22.176 21.676 22.676 0 0 0 0 0.40746 1 2594 2594 0.69038 0.16561 1 11780 87 7328 7334 14702 14702 0.11457579779312255 HFRRVFDIS 9 Unmodified _HFRRVFDIS_ 0 0 0 REV__HAL1_dup15628|chr11:64213901-64214168:-|1.069368657184393|0.0422573693884166|4.66|151.0|18|2|anti-sense REV__HAL1_dup15628|chr11:64213901-64214168:-|1.069368657184393|0.0422573693884166|4.66|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_3 4 588.8173828125 2 588.817264 1175.61998 NaN NaN NaN NaN NaN NaN NaN 37.842 1 41.083 40.583 41.583 3.2414 0 0 0 0.39428 1 7301 7301 2.0598 0 1 + 11781 23360 7329 7335 14703 14703 0.039190586943277594 HFRRWTQRRRR 11 Unmodified _HFRRWTQRRRR_ 0 0 0 ENST00000233468.4_1_2:24290678-24291201:-|nuORF ENST00000233468.4_1_2:24290678-24291201:-|nuORF ENST00000233468.4_1_2:24290678-24291201:-|nuORF MSMS UPN48_class_I_Rep_1 5 551.8428955078125 3 552.317318 1653.93013 NaN NaN NaN NaN NaN NaN NaN 83.178 1 86.765 86.265 87.265 3.5871 0 0 0 0.38417 1 19884 19884 0 0 1 11782 5888 7330 7336 14704 14704 0.1293177147363167 HFSFGYFPL 9 Unmodified _HFSFGYFPL_ 0 0 0 REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|68|3|anti-sense REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|68|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.7721557617188 2 557.77146 1113.52837 0.39957 0.00022287 1.3629 0.00076017 1.7624 0.00098304 557.7720080130919 62.25 0.052925 65.416 65.397 65.45 3.1667 7 3 3 0 0 0 0.45688 1 14750 14750 4.756 0 1 144960 + 11783 26245 7331 7337 14705 14705 -0.023856247228422944 HFSLHNSE 8 Unmodified _HFSLHNSE_ 0 0 0 AluJr_dup894|chr1:21144252-21144547:-|1.0491906795307395|0.0099548129787847|6.72|151.0|12|3|sense AluJr_dup894|chr1:21144252-21144547:-|1.0491906795307395|0.0099548129787847|6.72|151.0|12|3|sense AluJr_dup894|chr1:21144252-21144547:-|1.0491906795307395|0.0099548129787847|6.72|151.0|12|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 485.7227783203125 2 485.722498 969.430444 0.031038 1.5076E-05 -0.17249 -8.3781E-05 -0.14145 -6.8705E-05 485.7223159158212 30.468 0.71679 30.468 30.114 30.831 0 80 56 2 0 0 0 0.82752 1 4912 4912 11.64 0.81637 1 99703 11784 188 7332 7338 14706 14706 -0.05549433318844876 HFSLTPLSVI 10 Unmodified _HFSLTPLSVI_ 0 0 0 L1MC3_dup4086|chr5:98919183-98920512:+|1.6794084271527|0.037924042928082|5.47|151.0|73|1|anti-sense L1MC3_dup4086|chr5:98919183-98920512:+|1.6794084271527|0.037924042928082|5.47|151.0|73|1|anti-sense L1MC3_dup4086|chr5:98919183-98920512:+|1.6794084271527|0.037924042928082|5.47|151.0|73|1|anti-sense MSMS UPN47_class_I_Rep_2 3 557.31640625 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 70.47 1 73.753 73.253 74.253 3.2828 0 0 0 0.53105 1 17171 17171 3.5965 1.5367 1 11785 11339 7333 7339 14707 14707 0.07118889028470221 HFSRDISFIQ 10 Unmodified _HFSRDISFIQ_ 0 0 0 REV__MER103C_dup4007|chr7:92649046-92649270:-|2.0211966588271766|0.0090539900294635|7.8|150.0|16|2|anti-sense REV__MER103C_dup4007|chr7:92649046-92649270:-|2.0211966588271766|0.0090539900294635|7.8|150.0|16|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 625.3197021484375 2 625.319837 1248.62512 0.5239 0.0003276 0.029002 1.8135E-05 0.5529 0.00034574 625.3195274037286 57.528 0.30392 61.06 60.878 61.182 3.5317 37 25 2 0 0 0 0.44401 1 12384 12384 16.149 3.9084 1 114910 + 11786 31068 7334 7340 14708 14708 0.010753177662763846 HFSRRFLK 8 Unmodified _HFSRRFLK_ 0 0 0 nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 nc|ENSG00000188827|Q8IY92-2|SLX4 nc|ENSG00000188827|Q8IY92-2|SLX4 MSMS UPN47_class_I_Rep_1 2 545.8290405273438 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 53.691 1 57.219 56.719 57.719 3.5278 0 0 0 0.40472 1 12050 12050 4.3292 0 1 11787 5257 7335 7341 14709 14709 0.07835683765119938 HFSRRFLK 8 Unmodified _HFSRRFLK_ 0 0 0 nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4 nc|ENSG00000188827|Q8IY92-2|SLX4 nc|ENSG00000188827|Q8IY92-2|SLX4 MSMS UPN47_class_I_Rep_2 3 545.8291625976562 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 54.109 1 57.428 56.928 57.928 3.3187 0 0 0 0.40472 1 12206 12206 4.3292 0.38484 1 11788 5257 7335 7341 14710 14710 0.07835683765119938 HFSSFSLTLE 10 Unmodified _HFSSFSLTLE_ 0 0 0 ENST00000367334.9_1_1:201104596-201104782:-|nuORF ENST00000367334.9_1_1:201104596-201104782:-|nuORF ENST00000367334.9_1_1:201104596-201104782:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 584.2875366210938 2 584.287671 1166.56079 0.45004 0.00026295 0.077494 4.5279E-05 0.52754 0.00030823 584.2876714769718 58.74 1.299 62.263 61.735 63.034 3.5231 267 88 4 0 0 0 0.51565 1 12931 12931 10.074 10.074 1 4790600 11789 6350 7336 7342 14711 14711 -0.015828821105287716 HFSYEFYGVN 10 Unmodified _HFSYEFYGVN_ 0 0 0 Tigger9b_dup453|chrX:77776434-77776912:-|1.0259565876729493|0.0167375888155145|5.94|151.0|5|1|sense Tigger9b_dup453|chrX:77776434-77776912:-|1.0259565876729493|0.0167375888155145|5.94|151.0|5|1|sense Tigger9b_dup453|chrX:77776434-77776912:-|1.0259565876729493|0.0167375888155145|5.94|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 632.2792358398438 2 631.77747 1261.54039 0.046805 2.9571E-05 -0.74101 -0.00046815 -0.6942 -0.00043858 631.777011531684 24.603 0.87907 28.086 27.751 28.63 3.483 109 77 2 0 0 0 0.56354 1 3239 3239 1.3295 0.13619 1 69398 11790 33465 7337 7343 14712 14712 -0.0799205277035071 HFTKLGIK 8 Unmodified _HFTKLGIK_ 0 0 0 Tigger6a_dup533|chr10:26815934-26816884:+|1.5611777033938554|0.0110383573792401|7.14|150.0|4|1|sense Tigger6a_dup533|chr10:26815934-26816884:+|1.5611777033938554|0.0110383573792401|7.14|150.0|4|1|sense Tigger6a_dup533|chr10:26815934-26816884:+|1.5611777033938554|0.0110383573792401|7.14|150.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 472.2889404296875 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 106.6 1 110.28 109.78 110.78 3.6834 0 0 0 0.40738 1 25195 25195 0.79363 0 1 11791 33447 7338 7344 14713 14713 0.09150671893689832 HFTYSVLTI 9 Unmodified _HFTYSVLTI_ 0 0 0 L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|103|1|anti-sense L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|103|1|anti-sense L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|103|1|anti-sense MSMS UPN47_class_I_Rep_3 4 540.7870483398438 2 540.78985 1079.56515 NaN NaN NaN NaN NaN NaN NaN 57.672 1 60.84 60.34 61.34 3.1681 0 0 0 0.37476 1 13344 13344 6.7232 0.99131 1 11792 13064 7339 7345 14714 14714 0.028546271030336356 HFVFVHLK 8 Unmodified _HFVFVHLK_ 0 0 0 REV__nc|ENSG00000172468|Q96LI6-3|HSFY1 REV__nc|ENSG00000172468|Q96LI6-3|HSFY1 MSMS UPN47_class_I_Rep_2 3 513.8075561523438 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 83.338 1 86.75 86.25 87.25 3.4116 0 0 0 0.40604 1 20773 20773 2.5775 0 1 + 11793 32061 7340 7346 14715 14715 0.06930378130596182 HFVGHTLYI 9 Unmodified _HFVGHTLYI_ 0 0 0 ENST00000254322.2_1_19:14625909-14626227:-|nuORF ENST00000254322.2_1_19:14625909-14626227:-|nuORF ENST00000254322.2_1_19:14625909-14626227:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 543.7890014648438 2 543.790184 1085.56581 0.44726 0.00024321 -0.55925 -0.00030411 -0.11199 -6.09E-05 543.7892133189479 78.444 0.14311 81.89 81.842 81.985 3.4456 16 12 2 0 0 0 0.12799 1 19518 19518 28.487 1.6032 1 89259 11794 5922 7341 7347 14716 14716 0.026454665427536384 HFVGHTLYI 9 Unmodified _HFVGHTLYI_ 0 0 0 ENST00000254322.2_1_19:14625909-14626227:-|nuORF ENST00000254322.2_1_19:14625909-14626227:-|nuORF ENST00000254322.2_1_19:14625909-14626227:-|nuORF MSMS UPN47_class_I_Rep_1 2 543.7893676757812 2 543.790184 1085.56581 NaN NaN NaN NaN NaN NaN NaN 78.349 1 81.788 81.288 82.288 3.4395 0 0 0 0.38299 1 19476 19476 4.756 0.42677 1 11795 5922 7341 7347 14717 14717 0.026454665427536384 HFVHLHLR 8 Unmodified _HFVHLHLR_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense MSMS UPN47_class_I_Rep_3 4 529.8062133789062 2 529.80396 1057.59337 NaN NaN NaN NaN NaN NaN NaN 21.887 1 25.237 24.737 25.737 3.3496 0 0 0 0.40738 1 2527 2527 0.79363 0.33529 1 11796 14846 7342 7348 14718 14718 0.066874145936481 HFVHLHLR 8 Unmodified _HFVHLHLR_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense MSMS UPN48_class_I_Rep_1 5 529.804931640625 2 529.80396 1057.59337 NaN NaN NaN NaN NaN NaN NaN 30.072 1 33.614 33.114 34.114 3.542 0 0 0 0.40738 1 4267 4267 0.79363 0.10326 1 11797 14846 7342 7348 14719 14719 0.066874145936481 HFVHLHLR 8 Unmodified _HFVHLHLR_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense MSMS UPN48_class_I_Rep_2 6 529.8046264648438 2 529.80396 1057.59337 NaN NaN NaN NaN NaN NaN NaN 21.052 1 24.7 24.2 25.2 3.648 0 0 0 0.40738 1 1920 1920 0.79363 0 1 11798 14846 7342 7348 14720 14720 0.066874145936481 HFVHLHLR 8 Unmodified _HFVHLHLR_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense MSMS UPN48_class_I_Rep_2 6 529.80517578125 2 529.80396 1057.59337 NaN NaN NaN NaN NaN NaN NaN 23.195 1 26.838 26.338 27.338 3.6432 0 0 0 0.40738 1 2488 2488 0.79363 0.10326 1 11799 14846 7342 7348 14721 14721 0.066874145936481 HFVHLHLR 8 Unmodified _HFVHLHLR_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8053588867188 2 529.80396 1057.59337 NaN NaN NaN NaN NaN NaN NaN 19.062 1 22.65 22.15 23.15 3.5874 0 0 0 0.40738 1 1372 1372 0.79363 0.10326 1 11800 14846 7342 7348 14722 14722 0.066874145936481 HFVKWGMR 8 Unmodified _HFVKWGMR_ 0 0 0 REV__L1MEc_dup14341|chr13:51712452-51713334:+|2.526408677384032|0.0159211577548593|7.31|151.0|51|2|anti-sense REV__L1MEc_dup14341|chr13:51712452-51713334:+|2.526408677384032|0.0159211577548593|7.31|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7783203125 2 530.779096 1059.54364 NaN NaN NaN NaN NaN NaN NaN 118.46 1 122.12 121.62 122.62 3.6627 0 0 0 0.40604 1 28407 28407 2.5775 0 1 + 11801 28384 7343 7349 14723 14723 0.016249635933490936 HFVLEFFLNM 10 Unmodified _HFVLEFFLNM_ 0 0 0 REV__L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|244|2|anti-sense REV__L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|244|2|anti-sense MSMS UPN47_class_I_Rep_3 4 432.88519287109375 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 98.171 1 101.59 101.09 102.09 3.4216 0 0 0 0.53105 1 24317 24317 0.77653 0.078866 1 + 11802 30108 7344 7350 14724 14724 0.0012721818509362492 HFVMFLQW 8 Unmodified _HFVMFLQW_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|349|3|anti-sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|349|3|anti-sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|349|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.2769775390625 2 554.275855 1106.53716 NaN NaN NaN NaN NaN NaN NaN 41.809 1 45.56 45.06 46.06 3.7508 0 0 0 0.40738 1 7672 7672 0.79363 0 1 11803 14363 7345 7351 14725 14725 -0.011849743580341965 HFWARRDP 8 Unmodified _HFWARRDP_ 0 0 0 L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|60|2|sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|60|2|sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|60|2|sense MSMS UPN48_class_I_Rep_3 7 542.7771606445312 2 542.7754 1083.53625 NaN NaN NaN NaN NaN NaN NaN 19.652 1 23.273 22.773 23.773 3.6215 0 0 0 0.40738 1 1527 1527 0.79363 0 1 11804 9282 7346 7352 14726 14726 -0.0021805268272601097 HFWAWMQL 8 Unmodified _HFWAWMQL_ 0 0 0 REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|83|1|anti-sense REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|83|1|anti-sense MSMS UPN48_class_I_Rep_3 7 559.76513671875 2 559.765655 1117.51676 NaN NaN NaN NaN NaN NaN NaN 113.79 1 117.44 116.94 117.94 3.6511 0 0 0 0.40738 1 27067 27067 0.79363 0 1 + 11805 24246 7347 7353 14727 14727 -0.037301450178347295 HFWCPLMLLH 10 Unmodified _HFWCPLMLLH_ 0 0 0 REV__ENST00000602462.1_1_7:100845744-100846490:-|nuORF REV__ENST00000602462.1_1_7:100845744-100846490:-|nuORF MSMS UPN47_class_I_Rep_2 3 432.885009765625 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 101.68 1 105.19 104.69 105.69 3.5151 0 0 0 0.53105 1 24794 24794 0.15932 0 1 + 11806 23218 7348 7354 14728 14728 -0.005249982472605552 HFWCRVNTC 9 Unmodified _HFWCRVNTC_ 0 0 0 ENST00000323646.9_1_11:63341157-63341505:-|nuORF ENST00000323646.9_1_11:63341157-63341505:-|nuORF ENST00000323646.9_1_11:63341157-63341505:-|nuORF MSMS UPN48_class_I_Rep_3 7 583.2536010742188 2 583.255128 1164.4957 NaN NaN NaN NaN NaN NaN NaN 118.39 1 121.97 121.47 122.47 3.5847 0 0 0 0.39428 1 28154 28154 2.0598 0.57785 1 11807 6159 7349 7355 14729 14729 -0.07996478389009098 HFWPISDSE 9 Unmodified _HFWPISDSE_ 0 0 0 REV__ENST00000465075.6_1_1:161559398-161559893:+|nuORF REV__ENST00000465075.6_1_1:161559398-161559893:+|nuORF MSMS UPN47_class_I_Rep_1 2 559.2510986328125 2 559.251089 1116.48762 NaN NaN NaN NaN NaN NaN NaN 35.951 1 39.627 39.127 40.127 3.6762 0 0 0 0.39518 1 6653 6653 1.8442 0 1 + 11808 22463 7350 7356 14730 14730 -0.06596010833141008 HFWPRFAR 8 Unmodified _HFWPRFAR_ 0 0 0 MER4B-int_dup441|chr7:32527008-32527785:+|1.6430660425671997|0.0755253376729965|4.44|151.0|29|1|anti-sense MER4B-int_dup441|chr7:32527008-32527785:+|1.6430660425671997|0.0755253376729965|4.44|151.0|29|1|anti-sense MER4B-int_dup441|chr7:32527008-32527785:+|1.6430660425671997|0.0755253376729965|4.44|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 558.7955322265625 2 558.796135 1115.57772 NaN NaN NaN NaN NaN NaN NaN 92.761 1 96.531 96.031 97.031 3.77 0 0 0 0.40738 1 22069 22069 0.79363 0 1 11809 16024 7351 7357 14731 14731 0.02455128076599067 HFYHRIWF 8 Unmodified _HFYHRIWF_ 0 0 0 REV__MamTip2_dup5021|chr12:11763938-11764115:+|1.2705696585984934|0.0067472501648449|7.56|150.0|9|3|sense REV__MamTip2_dup5021|chr12:11763938-11764115:+|1.2705696585984934|0.0067472501648449|7.56|150.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 603.3019409179688 2 603.303793 1204.59303 NaN NaN NaN NaN NaN NaN NaN 89.972 1 93.661 93.161 94.161 3.6899 0 0 0 0.40738 1 22490 22490 0.79363 0 1 + 11810 31055 7352 7358 14732 14732 -0.001080051262078996 HFYHRIWF 8 Unmodified _HFYHRIWF_ 0 0 0 REV__MamTip2_dup5021|chr12:11763938-11764115:+|1.2705696585984934|0.0067472501648449|7.56|150.0|9|3|sense REV__MamTip2_dup5021|chr12:11763938-11764115:+|1.2705696585984934|0.0067472501648449|7.56|150.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 603.303466796875 2 603.303793 1204.59303 NaN NaN NaN NaN NaN NaN NaN 25.694 1 29.463 28.963 29.963 3.769 0 0 0 0.40738 1 3164 3164 0.79363 0 1 + 11811 31055 7352 7358 14733 14733 -0.001080051262078996 HFYLSPPTF 9 Unmodified _HFYLSPPTF_ 0 0 0 L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|75|3|anti-sense L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|75|3|anti-sense L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|75|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 555.2783813476562 2 554.776742 1107.53893 0.45297 0.0002513 -0.21299 -0.00011816 0.23998 0.00013313 554.7765308526818 71.035 1.4367 74.553 74.125 75.561 3.5185 354 142 4 0 0 0 0.35081 1 16683 16683 10.824 0 1 1089800 11812 8702 7353 7359 14734 14734 -0.010536420684502446 HFYMWRIS 8 Unmodified _HFYMWRIS_ 0 0 0 REV__L1ME4a_dup25215|chr12:104476351-104476759:-|2.764524251754442|0.0046014448470949|9.23|151.0|28|3|anti-sense REV__L1ME4a_dup25215|chr12:104476351-104476759:-|2.764524251754442|0.0046014448470949|9.23|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2745971679688 2 570.276386 1138.53822 NaN NaN NaN NaN NaN NaN NaN 37.662 1 40.903 40.403 41.403 3.2414 0 0 0 0.40738 1 7247 7247 0.79363 0 1 + 11813 28222 7354 7360 14735 14735 -0.02550759989139806 HGAGARKK 8 Unmodified _HGAGARKK_ 0 0 0 LTR41B_dup847|chr22:31695195-31695980:+|1.231352919115593|0.0425899989065008|4.85|151.0|35|2|anti-sense LTR41B_dup847|chr22:31695195-31695980:+|1.231352919115593|0.0425899989065008|4.85|151.0|35|2|anti-sense LTR41B_dup847|chr22:31695195-31695980:+|1.231352919115593|0.0425899989065008|4.85|151.0|35|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 412.7644958496094 2 412.746111 823.477669 0.053777 2.2196E-05 -0.0032238 -1.3306E-06 0.050553 2.0866E-05 412.7460394093092 79.228 1.0051 79.228 78.742 79.747 0 228 98 3 0 0 0 0.82752 1 18697 18697 0.79363 0.10326 1 1740900 11814 15642 7355 7361 14736 14736 0.05886890742806372 HGAVVVKC 8 Unmodified _HGAVVVKC_ 0 0 0 nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6;ENST00000484789.5_1_7:154659706-154672733:+|nuORF;ENST00000488512.5_1_7:154659769-154667811:+|nuORF;ENST00000479637.1_1_7:154664335-154668756:+|nuORF nc|ENSG00000130226|P42658-2|DPP6 nc|ENSG00000130226|P42658-2|DPP6 MSMS UPN46_class_I_Rep_3 1 406.7276306152344 2 406.725998 811.437443 NaN NaN NaN NaN NaN NaN NaN 102.09 1 102.09 101.59 102.59 0 0 0 0 0.40604 1 24911 24911 2.5775 0 1 11815 2646 7356 7362 14737 14737 0.024182080280183982 HGCKGKKI 8 Unmodified _HGCKGKKI_ 0 0 0 REV__MLT1C_dup6734|chr6:25104960-25105434:+|1.6924748598474664|0.293982287405891|2.53|151.0|8|2|sense REV__MLT1C_dup6734|chr6:25104960-25105434:+|1.6924748598474664|0.293982287405891|2.53|151.0|8|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 435.2510681152344 2 435.752547 869.490542 0.096183 4.1912E-05 0.01509 6.5755E-06 0.11127 4.8488E-05 435.75254752700897 70.845 0.084778 74.381 74.333 74.418 3.5359 15 10 2 0 0 0 0.72333 1 16498 16498 0.79363 0 1 48737 + 11816 31653 7357 7363 14738 14738 0.05057585810675391 HGDQAVRFLG 10 Unmodified _HGDQAVRFLG_ 0 0 0 chr11:1889743-1891773|97|27.37|0.06|8.89|+|1|None,LSP1|1 chr11:1889743-1891773|97|27.37|0.06|8.89|+|1|None,LSP1|1 chr11:1889743-1891773|97|27.37|0.06|8.89|+|1|None,LSP1|1 MSMS UPN46_class_I_Rep_3 1 550.283447265625 2 550.285797 1098.55704 NaN NaN NaN NaN NaN NaN NaN 95.528 1 95.528 95.028 96.028 0 0 0 0 0.53105 1 23197 23197 2.9952 0.41776 1 11817 575 7358 7364 14739 14739 0.011704929062716474 HGFKSRLP 8 Unmodified _HGFKSRLP_ 0 0 0 REV__ENST00000595393.5_1_19:17379790-17382406:+|nuORF REV__ENST00000595393.5_1_19:17379790-17382406:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 470.79473876953125 2 471.269419 940.524284 -0.31233 -0.00014719 0.14014 6.6044E-05 -0.17219 -8.1146E-05 471.26940658757906 37.428 0.90413 41.093 40.769 41.673 3.6652 94 67 2 0 0 0 0.72333 1 7176 7176 10.824 2.2306 1 125290 + 11818 23188 7359 7365 14740 14740 0.05164330574086762 HGFKSRLP 8 Unmodified _HGFKSRLP_ 0 0 0 REV__ENST00000595393.5_1_19:17379790-17382406:+|nuORF REV__ENST00000595393.5_1_19:17379790-17382406:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 470.7946472167969 2 471.269419 940.524284 -0.32318 -0.0001523 0.17921 8.4457E-05 -0.14396 -6.7845E-05 471.2693952405176 37.872 0.98103 41.26 41.042 42.023 3.3879 115 80 2 0 0 0 0.72333 1 7271 7271 10.824 2.2306 1 69434 + 11819 23188 7359 7365 14741 14741 0.05164330574086762 HGFKSRLP 8 Unmodified _HGFKSRLP_ 0 0 0 REV__ENST00000595393.5_1_19:17379790-17382406:+|nuORF REV__ENST00000595393.5_1_19:17379790-17382406:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 470.79461669921875 2 471.269419 940.524284 -0.5169 -0.0002436 0.42596 0.00020074 -0.090936 -4.2856E-05 471.26958908632406 38.147 0.90942 41.388 41.017 41.927 3.2414 95 66 2 0 0 0 0.72333 1 7379 7379 15.847 5.0233 1 71372 + 11820 23188 7359 7365 14742 14742 0.05164330574086762 HGFLFWDY 8 Unmodified _HGFLFWDY_ 0 0 0 REV__ENST00000447144.5_1_3:9714379-9730718:+|nuORF REV__ENST00000447144.5_1_3:9714379-9730718:+|nuORF MSMS UPN46_class_I_Rep_3 1 542.8228759765625 2 542.747985 1083.48142 NaN NaN NaN NaN NaN NaN NaN 63.475 1 63.475 62.975 63.975 0 0 0 0 0.40604 1 14254 14254 2.5775 0.27475 1 + 11821 20002 7360 7366 14743 14743 -0.05698484274012117 HGFVVTHWK 9 Unmodified _HGFVVTHWK_ 0 0 0 REV__nc|ENSG00000053747|Q16787-4|LAMA3 REV__nc|ENSG00000053747|Q16787-4|LAMA3 MSMS UPN48_class_I_Rep_3 7 555.7968139648438 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 35.79 1 39.456 38.956 39.956 3.6667 0 0 0 0.39428 1 5849 5849 2.0598 0.40713 1 + 11822 17684 7361 7367 14744 14744 0.02664288636879064 HGGGPVEPLP 10 Unmodified _HGGGPVEPLP_ 0 0 0 REV__ENST00000550339.1_1_12:52449890-52450494:+|nuORF REV__ENST00000550339.1_1_12:52449890-52450494:+|nuORF MSMS UPN48_class_I_Rep_3 7 480.2503356933594 2 480.250892 958.48723 NaN NaN NaN NaN NaN NaN NaN 35.511 1 39.184 38.684 39.684 3.6721 0 0 0 0.53105 1 5767 5767 1.4819 0.68827 1 + 11823 21895 7362 7368 14745 14745 0.006326142376565258 HGIDPTGTY 9 Unmodified _HGIDPTGTY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN46_class_I_Rep_3 1 480.7248229980469 2 480.724707 959.43486 0.17946 8.6272E-05 0.19957 9.5939E-05 0.37903 0.00018221 480.7247058750681 37.7 1.203 37.7 37.302 38.505 0 330 120 4 0 0 0 0.0051447 10 7074 7008;7042;7074;7114;7149;7180;7218;7249;7263;7333 131.3 53.313 1 2021200 11824 5222;5291 7363 7369 14746;14747;14748;14749;14750;14751;14752;14753;14754;14755 14748 -0.046479688959493615 HGIHMSIYQ 9 Unmodified _HGIHMSIYQ_ 0 0 0 L1PA14_dup2818|chr16:89366152-89366550:-|1.3044041384065448|0.0176338626897568|6.21|151.0|14|3|sense L1PA14_dup2818|chr16:89366152-89366550:-|1.3044041384065448|0.0176338626897568|6.21|151.0|14|3|sense L1PA14_dup2818|chr16:89366152-89366550:-|1.3044041384065448|0.0176338626897568|6.21|151.0|14|3|sense MSMS UPN47_class_I_Rep_1 2 543.294921875 2 543.263476 1084.5124 NaN NaN NaN NaN NaN NaN NaN 74.632 1 78.026 77.526 78.526 3.3937 0 0 0 0.36505 1 18378 18378 7.2892 0.56607 1 11825 13853 7364 7370 14756 14756 -0.02647654231418528 HGIHMSIYQ 9 Unmodified _HGIHMSIYQ_ 0 0 0 L1PA14_dup2818|chr16:89366152-89366550:-|1.3044041384065448|0.0176338626897568|6.21|151.0|14|3|sense L1PA14_dup2818|chr16:89366152-89366550:-|1.3044041384065448|0.0176338626897568|6.21|151.0|14|3|sense L1PA14_dup2818|chr16:89366152-89366550:-|1.3044041384065448|0.0176338626897568|6.21|151.0|14|3|sense MSMS UPN47_class_I_Rep_1 2 543.263671875 2 543.263476 1084.5124 NaN NaN NaN NaN NaN NaN NaN 74.994 1 78.388 77.888 78.888 3.3937 0 0 0 0.36505 1 18486 18486 7.2892 0.56607 1 11826 13853 7364 7370 14757 14757 -0.02647654231418528 HGIVKKYK 8 Unmodified _HGIVKKYK_ 0 0 0 REV__L1M1_dup846|chr2:63999250-63999867:-|1.069328689943798|0.0183195800331724|5.87|151.0|9|2|sense REV__L1M1_dup846|chr2:63999250-63999867:-|1.069328689943798|0.0183195800331724|5.87|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 486.80267333984375 2 486.803094 971.591636 NaN NaN NaN NaN NaN NaN NaN 89.058 1 92.731 92.231 93.231 3.6738 0 0 0 0.40738 1 22264 22264 0.79363 0 1 + 11827 24156 7365 7371 14758 14758 0.10470360785029698 HGKGALQQAL 10 Unmodified _HGKGALQQAL_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MULTI-MSMS UPN47_class_I_Rep_1 2 512.2924194335938 2 511.790715 1021.56688 -0.17119 -8.7613E-05 -0.14502 -7.4221E-05 -0.31621 -0.00016183 511.7906723581118 38.579 0.5257 42.244 41.96 42.485 3.6652 46 35 2 0 0 0 0.54822 2 7400 7400;7447 5.7319 0.83484 1 85963 + 11828 17749 7366 7372 14759;14760 14759 0.056956809116513796 HGKGALQQAL 10 Unmodified _HGKGALQQAL_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MULTI-SECPEP UPN47_class_I_Rep_1 2 512.2924194335938 2 511.790715 1021.56688 -0.17119 -8.7613E-05 -0.14502 -7.4221E-05 -0.31621 -0.00016183 511.7906723581118 38.579 0.5257 42.244 41.96 42.485 3.6652 46 35 2 0 0 0 0.84575 1 7400 7400 5.7319 0.83484 1 85963 + 11829 17749 7366 7372 14761 14761 0.056956809116513796 HGKGALQQAL 10 Unmodified _HGKGALQQAL_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MULTI-MSMS UPN47_class_I_Rep_2 3 511.79022216796875 2 511.790715 1021.56688 -0.27612 -0.00014132 -0.34433 -0.00017622 -0.62045 -0.00031754 511.7904938771818 38.937 0.60153 42.316 42.112 42.713 3.3785 41 34 2 0 0 0 0.54466 1 7566 7566 6.2058 0.47393 1 75463 + 11830 17749 7366 7372 14762 14762 0.056956809116513796 HGKGALQQAL 10 Unmodified _HGKGALQQAL_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MULTI-MATCH UPN47_class_I_Rep_3 4 2 511.790715 1021.56688 -0.22057 -0.00011288 -0.099527 -5.0937E-05 -0.3201 -0.00016382 511.7904593766295 39.194 0.60969 42.431 42.18 42.79 3.238 0.10108 8.6238E-05 NaN 6.2058 54 41 2 NaN NaN NaN NaN 0 NaN NaN 0 78842 + 11831 17749 7366 7372 0.056956809116513796 HGKKIIIIK 9 Unmodified _HGKKIIIIK_ 0 0 0 REV__ENST00000460477.1_1_7:45956706-45960430:-|nuORF REV__ENST00000460477.1_1_7:45956706-45960430:-|nuORF MSMS UPN48_class_I_Rep_2 6 525.3634033203125 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 70.687 1 74.223 73.723 74.723 3.5359 0 0 0 0.40038 1 16454 16454 0.6015 0 1 + 11832 19546 7367 7373 14763 14763 0.18967768778634309 HGKKKRRKR 9 Unmodified _HGKKKRRKR_ 0 0 0 REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN46_class_I_Rep_3 1 597.3934326171875 2 597.394339 1192.77413 NaN NaN NaN NaN NaN NaN NaN 111.1 1 111.1 110.6 111.6 0 0 0 0 0.4007 1 27379 27379 0.52476 0.066424 1 + 11833 20855 7368 7374 14764 14764 0.18544932970326045 HGKKKRRKR 9 Unmodified _HGKKKRRKR_ 0 0 0 REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN47_class_I_Rep_1 2 597.8046875 2 597.394339 1192.77413 NaN NaN NaN NaN NaN NaN NaN 110.62 1 114.2 113.7 114.7 3.5835 0 0 0 0.4007 1 27272 27272 0.52476 0.12405 1 + 11834 20855 7368 7374 14765 14765 0.18544932970326045 HGKKKRRKRK 10 Unmodified _HGKKKRRKRK_ 0 0 0 REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN48_class_I_Rep_1 5 441.2969970703125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 29.223 1 32.773 32.273 33.273 3.5499 0 0 0 0.53105 1 4030 4030 0.15932 0.064481 1 + 11835 20855 7369 7375 14766 14766 0.22148866441511927 HGKKKRRKRK 10 Unmodified _HGKKKRRKRK_ 0 0 0 REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 32.219 1 35.868 35.368 36.368 3.6497 0 0 0 0.53105 1 4950 4950 0.15932 0.064481 1 + 11836 20855 7369 7375 14767 14767 0.22148866441511927 HGKKKRRKRK 10 Unmodified _HGKKKRRKRK_ 0 0 0 REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN48_class_I_Rep_3 7 441.2978210449219 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 27.075 1 30.831 30.331 31.331 3.7555 0 0 0 0.53105 1 3511 3511 0.15932 0.064481 1 + 11837 20855 7369 7375 14768 14768 0.22148866441511927 HGLHWLFL 8 Unmodified _HGLHWLFL_ 0 0 0 REV__ENST00000296215.7_2_1:38003034-38003172:-|nuORF REV__ENST00000296215.7_2_1:38003034-38003172:-|nuORF MSMS UPN47_class_I_Rep_2 3 511.7906188964844 2 511.782162 1021.54977 NaN NaN NaN NaN NaN NaN NaN 39.016 1 42.395 41.895 42.895 3.3785 0 0 0 0.4032 1 7617 7617 6.3541 0 1 + 11838 21651 7370 7376 14769 14769 0.03985805096499462 HGLIHNIR 8 Unmodified _HGLIHNIR_ 0 0 0 REV__L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|23|2|sense REV__L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 480.51922607421875 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 19.497 1 23.147 22.647 23.647 3.6497 0 0 0 0.40738 1 1498 1498 0.79363 0 1 + 11839 25346 7371 7377 14770 14770 0.06515135322638343 HGLIHNIR 8 Unmodified _HGLIHNIR_ 0 0 0 REV__L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|23|2|sense REV__L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 480.2798156738281 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 20.557 1 24.205 23.705 24.705 3.648 0 0 0 0.40738 1 1790 1790 0.79363 0 1 + 11840 25346 7371 7377 14771 14771 0.06515135322638343 HGLIHNIR 8 Unmodified _HGLIHNIR_ 0 0 0 REV__L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|23|2|sense REV__L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 480.27984619140625 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 21.048 1 24.696 24.196 25.196 3.648 0 0 0 0.40738 1 1919 1919 0.79363 0 1 + 11841 25346 7371 7377 14772 14772 0.06515135322638343 HGLLFPTYK 9 Unmodified _HGLLFPTYK_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|116|2|anti-sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|116|2|anti-sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|116|2|anti-sense MSMS UPN46_class_I_Rep_3 1 538.2993774414062 2 538.300384 1074.58622 NaN NaN NaN NaN NaN NaN NaN 38.264 1 38.264 37.764 38.764 0 0 0 0 0.38478 1 7271 7271 4.3292 2.2695 1 11842 8395 7372 7378 14773 14773 0.051906372025541714 HGLLGLRLNF 10 Unmodified _HGLLGLRLNF_ 0 0 0 REV__MER47A_dup1204|chr8:55882911-55883261:-|4.148604679045273|0.0125130637057113|8.37|151.0|10|3|sense REV__MER47A_dup1204|chr8:55882911-55883261:-|4.148604679045273|0.0125130637057113|8.37|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 570.338623046875 2 570.337833 1138.66111 NaN NaN NaN NaN NaN NaN NaN 40.259 1 40.259 39.759 40.759 0 0 0 0 0.53105 1 7803 7803 3.2813 1.2216 1 + 11843 31336 7373 7379 14774 14774 0.09732819733790166 HGLPLKIK 8 Unmodified _HGLPLKIK_ 0 0 0 ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1 ENST00000472931.6_1_7:13946033-14025001:-|nuORF ENST00000472931.6_1_7:13946033-14025001:-|nuORF MSMS UPN47_class_I_Rep_2 3 453.29986572265625 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 24.982 1 28.465 27.965 28.965 3.483 0 0 0 0.40746 1 3400 3400 0.69038 0 1 11844 719 7374 7380 14775 14775 0.12971262273356388 HGMFFHLFVP 10 Unmodified _HGMFFHLFVP_ 0 0 0 L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense;L1PA7_dup5664|chr6:136686245-136688432:+|3.814078110182136|0.1234087282726737|4.95|151.0|79|1|anti-sense;L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|167|3|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|117|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 616.8109741210938 2 616.307687 1230.60082 0.16712 0.000103 1.7958 0.0011068 1.9629 0.0012098 616.3086079580737 46.093 0.22682 49.792 49.659 49.886 3.6999 20 14 2 0 0 0 0.84575 1 9727 9727 1.8442 0 1 73806 11845 14852 7375 7381 14776 14776 -0.005256139209677713 HGMFFHLFVP 10 Unmodified _HGMFFHLFVP_ 0 0 0 L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense;L1PA7_dup5664|chr6:136686245-136688432:+|3.814078110182136|0.1234087282726737|4.95|151.0|79|1|anti-sense;L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|167|3|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|117|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.8106079101562 2 616.307687 1230.60082 0.40137 0.00024737 1.6808 0.0010359 2.0822 0.0012833 616.3086417823271 46.057 0.60248 49.815 49.577 50.179 3.7579 56 38 2 0 0 0 0.56281 1 8920 8920 1.8442 1.8442 1 116320 11846 14852 7375 7381 14777 14777 -0.005256139209677713 HGMFFHLFVP 10 Unmodified _HGMFFHLFVP_ 0 0 0 L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense;L1PA7_dup5664|chr6:136686245-136688432:+|3.814078110182136|0.1234087282726737|4.95|151.0|79|1|anti-sense;L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|167|3|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|117|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|326|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 616.3095703125 2 616.307687 1230.60082 0.49662 0.00030607 1.5486 0.00095443 2.0452 0.0012605 616.308618255372 46.333 0.53703 49.97 49.737 50.274 3.6369 51 32 2 0 0 0 0.56281 3 8922 8922;8957;9026 1.8442 1.8442 1 162950 11847 14852 7375 7381 14778;14779;14780 14778 -0.005256139209677713 HGMFFPYLYF 10 Unmodified _HGMFFPYLYF_ 0 0 0 L1MB8_dup1318|chr2:38327947-38329144:+|1.0915343993512123|0.0239456093572276|5.51|151.0|64|1|anti-sense L1MB8_dup1318|chr2:38327947-38329144:+|1.0915343993512123|0.0239456093572276|5.51|151.0|64|1|anti-sense L1MB8_dup1318|chr2:38327947-38329144:+|1.0915343993512123|0.0239456093572276|5.51|151.0|64|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 440.5947265625 3 441.207327 1320.60015 0.044854 1.979E-05 -0.088044 -3.8846E-05 -0.04319 -1.9056E-05 441.2072865643776 29.279 0.087036 33.008 32.964 33.051 3.7286 15 10 2 0 0 0 0.84575 1 4077 4077 0.77653 0 1 37123 11848 10935 7376 7382 14781 14781 -0.047324533606570185 HGNPKTRKARR 11 Unmodified _HGNPKTRKARR_ 0 0 0 REV__nc|ENSG00000157168|Q02297-11|NRG1 REV__nc|ENSG00000157168|Q02297-11|NRG1 MULTI-MSMS UPN48_class_I_Rep_2 6 440.9292297363281 3 440.928837 1319.76468 0.14551 6.4162E-05 0.18129 7.9935E-05 0.3268 0.0001441 440.9289629773961 28.586 0.22282 32.217 32.088 32.31 3.6311 45 24 2 0 0 0 0.68081 1 3928 3928 0.45452 0 1 83944 + 11849 19817 7377 7383 14782 14782 0.11759119894145442 HGPGEEGQ 8 Unmodified _HGPGEEGQ_ 0 0 0 ENST00000581241.5_1_17:80210953-80231227:-|nuORF ENST00000581241.5_1_17:80210953-80231227:-|nuORF ENST00000581241.5_1_17:80210953-80231227:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 405.6729736328125 2 405.672474 809.330395 0.063978 2.5954E-05 0.72517 0.00029418 0.78914 0.00032013 405.67269480033264 109.65 0.2526 109.65 109.54 109.8 0 36 21 2 0 0 0 0.82752 1 26945 26945 0.79363 0 1 1238600 11850 7558 7378 7384 14783 14783 -0.08189670652654968 HGQPSETHPS 10 Unmodified _HGQPSETHPS_ 0 0 0 REV__THE1C-int_dup868|chr7:116244132-116245710:-|2.416576673701566|0.4467940189701673|2.44|151.0|23|2|sense REV__THE1C-int_dup868|chr7:116244132-116245710:-|2.416576673701566|0.4467940189701673|2.44|151.0|23|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 538.1612548828125 2 538.741419 1075.46829 -0.4619 -0.00024885 -0.79555 -0.00042859 -1.2575 -0.00067744 538.7406527453714 13.127 0.15303 16.5 16.422 16.575 3.3734 21 14 2 0 0 0 0.84575 1 239 239 1.3295 0.63916 1 39345 + 11851 32293 7379 7385 14784 14784 -0.06642967124048482 HGQPVQITL 9 Unmodified _HGQPVQITL_ 0 0 0 ENSG00000185436|ENST00000327535|IFNLR1;nc|ENSG00000185436|Q8IU57-2|IFNLR1;nc|ENSG00000185436|Q8IU57-4|IFNLR1 ENSG00000185436|ENST00000327535|IFNLR1 ENSG00000185436|ENST00000327535|IFNLR1 MULTI-MSMS UPN46_class_I_Rep_3 1 496.77978515625 2 496.779816 991.545079 0.23654 0.00011751 0.013177 6.5463E-06 0.24972 0.00012406 496.7797625273559 53.298 0.66935 53.298 52.929 53.598 0 118 69 2 0 0 0 0.1249 1 11463 11463 29.082 0 1 657760 11852 5103 7380 7386 14785 14785 0.04896876163093111 HGQRKRRR 8 Unmodified _HGQRKRRR_ 0 0 0 REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF REV__ENST00000580483.5_1_18:10525983-10526091:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.79248046875 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 98.257 1 102.04 101.54 102.54 3.7861 0 0 0 0.40746 1 24327 24327 0.69038 0 1 + 11853 23123 7381 7387 14786 14786 0.10630640833983307 HGQVQLLL 8 Unmodified _HGQVQLLL_ 0 0 0 ENST00000310127.10_1_19:1806674-1809663:-|nuORF ENST00000310127.10_1_19:1806674-1809663:-|nuORF ENST00000310127.10_1_19:1806674-1809663:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 454.271728515625 2 454.271627 906.528701 0.17832 8.1004E-05 -0.39787 -0.00018074 -0.21956 -9.9738E-05 454.27145224561025 29.457 0.4356 33.089 32.897 33.333 3.6316 67 48 2 0 0 0 0.82752 1 4184 4184 5.2307 0 1 62241 11854 6107 7382 7388 14787 14787 0.0716979499700301 HGRKISAT 8 Unmodified _HGRKISAT_ 0 0 0 L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.2506408691406 2 435.251226 868.487899 0.0067095 2.9203E-06 -0.46838 -0.00020386 -0.46167 -0.00020094 435.2509396843038 70.976 0.69771 74.35 74.048 74.746 3.3741 100 62 2 0 0 0 0.82752 1 17299 17299 2.5775 0 1 369910 11855 11397 7383 7389 14788 14788 0.048394536773685104 HGRKISAT 8 Unmodified _HGRKISAT_ 0 0 0 L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 435.2510070800781 2 435.251226 868.487899 -0.39606 -0.00017239 -0.24544 -0.00010683 -0.6415 -0.00027922 435.25099104155055 70.691 1.8543 73.974 72.963 74.817 3.2828 275 170 2 0 0 0 0.82752 3 17237 17237;17280;17324 2.5775 0 1 254760 11856 11397 7383 7389 14789;14790;14791 14789 0.048394536773685104 HGRKISAT 8 Unmodified _HGRKISAT_ 0 0 0 L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 435.2508544921875 2 435.251226 868.487899 -0.4012 -0.00017462 -0.15926 -6.9317E-05 -0.56046 -0.00024394 435.25102546217005 71.164 1.8647 74.382 72.91 74.775 3.2188 221 159 2 0 0 0 0.82752 2 17333 17333;17450 2.5775 0 1 332500 11857 11397 7383 7389 14792;14793 14792 0.048394536773685104 HGRKISAT 8 Unmodified _HGRKISAT_ 0 0 0 L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense L1MC4_dup11630|chr8:27413000-27414247:-|1.3483528204685669|0.013882826256221|6.6|151.0|62|2|anti-sense MSMS UPN48_class_I_Rep_2 6 435.2512512207031 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 71.251 1 74.802 74.302 75.302 3.5505 0 0 0 0.40604 1 16611 16611 2.5775 0 1 11858 11397 7383 7389 14794 14794 0.048394536773685104 HGVRYRLV 8 Unmodified _HGVRYRLV_ 0 0 0 REV__L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|166|1|anti-sense REV__L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|166|1|anti-sense MSMS UPN47_class_I_Rep_1 2 500.29486083984375 2 500.295968 998.577383 NaN NaN NaN NaN NaN NaN NaN 47.264 1 50.959 50.459 51.459 3.6951 0 0 0 0.40746 1 10104 10104 0.69038 0 1 + 11859 26676 7384 7390 14795 14795 0.07803708356732386 HGWLYLRC 8 Unmodified _HGWLYLRC_ 0 0 0 REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|136|3|sense REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|136|3|sense MSMS UPN48_class_I_Rep_2 6 524.2625122070312 2 524.263279 1046.51201 NaN NaN NaN NaN NaN NaN NaN 75.191 1 78.781 78.281 79.281 3.59 0 0 0 0.40738 1 17724 17724 0.79363 0 1 + 11860 29636 7385 7391 14796 14796 -0.0093902916062234 HGYHWGGPL 9 Unmodified _HGYHWGGPL_ 0 0 0 REV__chr3:47714490-47718022|48|10.52|0.61|4.1|-|2|TE_info:AluJr,AluJr_dup14161,Alu,SINE,donor,+,47718022,47718162|SMARCC1,None|4 REV__chr3:47714490-47718022|48|10.52|0.61|4.1|-|2|TE_info:AluJr,AluJr_dup14161,Alu,SINE,donor,+,47718022,47718162|SMARCC1,None|4 MSMS UPN47_class_I_Rep_3 4 512.7306518554688 2 512.243401 1022.47225 NaN NaN NaN NaN NaN NaN NaN 25.853 1 29.201 28.701 29.701 3.3478 0 0 0 0.39326 1 3697 3697 2.3027 1.5091 1 + 11861 17449 7386 7392 14797 14797 -0.038088328396725046 HGYLSTYLY 9 Unmodified _HGYLSTYLY_ 0 0 0 L1MA6_dup4291|chr13:21317231-21317843:-|1.488928907269896|0.0099356437248329|7.23|151.0|23|2|anti-sense L1MA6_dup4291|chr13:21317231-21317843:-|1.488928907269896|0.0099356437248329|7.23|151.0|23|2|anti-sense L1MA6_dup4291|chr13:21317231-21317843:-|1.488928907269896|0.0099356437248329|7.23|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_2 6 558.7722778320312 2 558.771657 1115.52876 NaN NaN NaN NaN NaN NaN NaN 23.216 1 26.86 26.36 27.36 3.6432 0 0 0 0.39518 1 2495 2495 1.8442 1.0506 1 11862 9984 7387 7393 14798 14798 -0.024382497936812797 HGYTLKAL 8 Unmodified _HGYTLKAL_ 0 0 0 L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|8|3|sense L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|8|3|sense L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|8|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.75787353515625 2 451.758352 901.502152 -0.7639 -0.0003451 -0.44171 -0.00019955 -1.2056 -0.00054464 451.758257406483 35.757 0.51682 39.012 38.825 39.342 3.2547 41 33 2 0 0 0 0.82752 1 6641 6641 2.3027 0 1 61580 11863 11005 7388 7394 14799 14799 0.0474610610565378 HGYVDAPQLY 10 Unmodified _HGYVDAPQLY_ 0 0 0 REV__nc|ENSG00000188316|A6NNW6-2|ENO4 REV__nc|ENSG00000188316|A6NNW6-2|ENO4 MULTI-MSMS UPN47_class_I_Rep_2 3 581.7798461914062 2 581.780013 1161.54547 0.045194 2.6293E-05 0.17308 0.0001007 0.21827 0.00012699 581.7800540568915 38.922 2.2633 42.301 41.894 44.157 3.3785 333 147 3 0 0 0 0.48573 1 8152 8152 13.042 0.51092 1 703400 + 11864 20963 7389 7395 14800 14800 -0.028837489077204737 HGYVKQSL 8 Unmodified _HGYVKQSL_ 0 0 0 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 MULTI-MSMS UPN47_class_I_Rep_1 2 466.2530822753906 2 466.253434 930.492316 -0.38651 -0.00018021 -0.36209 -0.00016882 -0.74859 -0.00034903 466.2531604490062 20.35 0.86207 23.962 23.58 24.442 3.6118 166 92 2 0 0 0 0.82752 2 1988 1988;2034 32.786 10.049 1 117020 11865 2125 7390 7396 14801;14802 14801 0.024289181002814075 HGYVKQSL 8 Unmodified _HGYVKQSL_ 0 0 0 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 MULTI-MSMS UPN47_class_I_Rep_3 4 466.2530822753906 2 466.253434 930.492316 -0.83081 -0.00038737 0.15573 7.2609E-05 -0.67509 -0.00031476 466.2534378163051 20.968 0.99571 24.318 23.939 24.935 3.3496 156 87 3 0 0 0 0.82752 1 2250 2250 12.532 7.3009 1 88822 11866 2125 7390 7396 14803 14803 0.024289181002814075 HGYVKQSL 8 Unmodified _HGYVKQSL_ 0 0 0 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 ENSG00000115365|ENST00000450366|LANCL1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 466.253434 930.492316 -0.37693 -0.00017575 -0.23857 -0.00011123 -0.6155 -0.00028698 466.25317192373456 20.793 0.93346 24.201 23.739 24.672 3.4074 0.040523 -2.3078E-05 NaN 32.786 164 99 2 NaN NaN NaN NaN 0 NaN NaN 0 89019 11867 2125 7390 7396 0.024289181002814075 HHAGKPAED 9 Unmodified _HHAGKPAED_ 0 0 0 REV__ENSG00000108819|ENST00000612501|PPP1R9B REV__ENSG00000108819|ENST00000612501|PPP1R9B MSMS UPN47_class_I_Rep_2 3 481.2294006347656 2 481.227948 960.441343 NaN NaN NaN NaN NaN NaN NaN 28.32 1 31.818 31.318 32.318 3.4986 0 0 0 0.39428 1 4378 4378 2.0598 0 1 + 11868 18393 7391 7397 14804 14804 -0.040460309445961684 HHAPRHLY 8 Unmodified _HHAPRHLY_ 0 0 0 REV__LTR47A_dup623|chr19:5099183-5099595:-|1.222746642244923|0.0853103262540807|3.84|150.0|10|2|sense REV__LTR47A_dup623|chr19:5099183-5099595:-|1.222746642244923|0.0853103262540807|3.84|150.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 515.7705078125 2 515.770117 1029.52568 NaN NaN NaN NaN NaN NaN NaN 17.829 1 21.187 20.687 21.687 3.3581 0 0 0 0.40738 1 1374 1374 0.79363 0 1 + 11869 30933 7392 7398 14805 14805 0.012099646628485061 HHAQLIYLF 9 Unmodified _HHAQLIYLF_ 0 0 0 AluJb_dup109908|chr17:67877628-67877932:-|1.1096033714822895|0.0129153490527255|6.42|151.0|20|2|anti-sense AluJb_dup109908|chr17:67877628-67877932:-|1.1096033714822895|0.0129153490527255|6.42|151.0|20|2|anti-sense AluJb_dup109908|chr17:67877628-67877932:-|1.1096033714822895|0.0129153490527255|6.42|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 571.3106079101562 2 571.311284 1140.60801 0.33025 0.00018868 -1.306 -0.00074611 -0.97572 -0.00055744 571.310361564866 68.679 0.31363 72.044 71.968 72.281 3.3646 44 26 2 0 0 0 0.33654 1 16623 16623 11.64 1.5664 1 139490 11870 15 7393 7399 14806 14806 0.04333441951121131 HHAWLVFVS 9 Unmodified _HHAWLVFVS_ 0 0 0 AluJb_dup114126|chr19:4912757-4913053:-|1.7524539333629392|0.0443791960152352|5.3|151.0|18|2|anti-sense AluJb_dup114126|chr19:4912757-4913053:-|1.7524539333629392|0.0443791960152352|5.3|151.0|18|2|anti-sense AluJb_dup114126|chr19:4912757-4913053:-|1.7524539333629392|0.0443791960152352|5.3|151.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 548.2896118164062 2 548.290351 1094.56615 NaN NaN NaN NaN NaN NaN NaN 91.114 1 91.114 90.614 91.614 0 0 0 0 0.39326 1 21993 21993 2.3027 0.82083 1 11871 20 7394 7400 14807 14807 0.022648862626056143 HHCCYTGP 8 Unmodified _HHCCYTGP_ 0 0 0 REV__ENST00000389048.7_2_2:30143287-30143704:-|nuORF REV__ENST00000389048.7_2_2:30143287-30143704:-|nuORF MSMS UPN47_class_I_Rep_1 2 459.1717224121094 2 459.173272 916.331992 NaN NaN NaN NaN NaN NaN NaN 36.643 1 40.312 39.812 40.812 3.6692 0 0 0 0.40738 1 6864 6864 0.79363 0 1 + 11872 22076 7395 7401 14808 14808 -0.129520761599224 HHCCYTGP 8 Unmodified _HHCCYTGP_ 0 0 0 REV__ENST00000389048.7_2_2:30143287-30143704:-|nuORF REV__ENST00000389048.7_2_2:30143287-30143704:-|nuORF MSMS UPN47_class_I_Rep_2 3 459.1719970703125 2 459.173272 916.331992 NaN NaN NaN NaN NaN NaN NaN 36.85 1 40.249 39.749 40.749 3.3988 0 0 0 0.40738 1 6960 6960 0.79363 0 1 + 11873 22076 7395 7401 14809 14809 -0.129520761599224 HHCGHQLWEC 10 Unmodified _HHCGHQLWEC_ 0 0 0 L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|93|1|anti-sense L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|93|1|anti-sense L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|93|1|anti-sense MSMS UPN46_class_I_Rep_3 1 625.2734985351562 2 625.253117 1248.49168 NaN NaN NaN NaN NaN NaN NaN 60.637 1 60.637 60.137 61.137 0 0 0 0 0.53105 1 13460 13460 1.6526 0.17072 1 11874 9632 7396 7402 14810 14810 -0.12262567882703479 HHCKVYLM 8 Unmodified _HHCKVYLM_ 0 0 0 REV__L1MC2_dup2904|chr8:55928446-55929139:-|2.866102790579936|0.036855386858522|6.28|151.0|47|3|anti-sense REV__L1MC2_dup2904|chr8:55928446-55929139:-|2.866102790579936|0.036855386858522|6.28|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_2 3 515.750732421875 2 515.75169 1029.48883 NaN NaN NaN NaN NaN NaN NaN 68.545 1 71.815 71.315 72.315 3.2696 0 0 0 0.40604 1 16595 16595 2.5775 0.27475 1 + 11875 26652 7397 7403 14811 14811 -0.024737912696082276 HHCVVLGIL 9 Unmodified _HHCVVLGIL_ 0 0 0 ENST00000500113.1_1_11:77850879-77852634:+|nuORF ENST00000500113.1_1_11:77850879-77852634:+|nuORF ENST00000500113.1_1_11:77850879-77852634:+|nuORF MSMS UPN47_class_I_Rep_1 2 495.7800598144531 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 84.22 1 87.785 87.285 88.285 3.5655 0 0 0 0.3264 1 21073 21073 9.3474 0 1 11876 7126 7398 7404 14812 14812 0.0528642801625665 HHCVVLGIL 9 Unmodified _HHCVVLGIL_ 0 0 0 ENST00000500113.1_1_11:77850879-77852634:+|nuORF ENST00000500113.1_1_11:77850879-77852634:+|nuORF ENST00000500113.1_1_11:77850879-77852634:+|nuORF MSMS UPN47_class_I_Rep_2 3 495.7794189453125 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 82.324 1 85.723 85.223 86.223 3.3984 0 0 0 0.3264 1 20520 20520 9.3474 0 1 11877 7126 7398 7404 14813 14813 0.0528642801625665 HHDNHHGHSP 10 Unmodified _HHDNHHGHSP_ 0 0 0 SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant;ENSG00000075213|ENST00000265362|SEMA3A SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant MSMS UPN48_class_I_Rep_3 7 587.74755859375 2 587.747902 1173.48125 NaN NaN NaN NaN NaN NaN NaN 14.939 1 18.479 17.979 18.979 3.5392 0 0 0 0.53105 1 509 509 0 0 1 11878 1141 7399 7405 14814 14814 -0.0985509122131134 HHFCDRRD 8 Unmodified _HHFCDRRD_ 0 0 0 REV__MLT2B4_dup921|chr3:167673053-167673577:+|1.1058097007017769|0.2704209323627905|2.03|150.0|9|2|sense REV__MLT2B4_dup921|chr3:167673053-167673577:+|1.1058097007017769|0.2704209323627905|2.03|150.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 543.2393798828125 2 543.238324 1084.46209 NaN NaN NaN NaN NaN NaN NaN 111.6 1 115.17 114.67 115.67 3.572 0 0 0 0.40738 1 27535 27535 0.79363 0 1 + 11879 31828 7400 7406 14815 14815 -0.07675763836550686 HHFMLCIWIP 10 Unmodified _HHFMLCIWIP_ 0 0 0 REV__L1MC4_dup15148|chr10:21597670-21598588:-|1.965312972359241|0.0315417930428092|5.96|151.0|44|2|anti-sense REV__L1MC4_dup15148|chr10:21597670-21598588:-|1.965312972359241|0.0315417930428092|5.96|151.0|44|2|anti-sense MSMS UPN46_class_I_Rep_3 1 432.88507080078125 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 92.358 1 92.358 91.858 92.858 0 0 0 0 0.53105 1 22349 22349 0.15932 0 1 + 11880 26818 7401 7407 14816 14816 -0.005249982472605552 HHFMLCIWIP 10 Unmodified _HHFMLCIWIP_ 0 0 0 REV__L1MC4_dup15148|chr10:21597670-21598588:-|1.965312972359241|0.0315417930428092|5.96|151.0|44|2|anti-sense REV__L1MC4_dup15148|chr10:21597670-21598588:-|1.965312972359241|0.0315417930428092|5.96|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 432.8851318359375 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 92.533 1 96.296 95.796 96.796 3.7629 0 0 0 0.53105 1 22018 22018 0.15932 0 1 + 11881 26818 7401 7407 14817 14817 -0.005249982472605552 HHFVLFKKR 9 Unmodified _HHFVLFKKR_ 0 0 0 REV__L1MB7_dup5823|chr4:105250982-105251860:-|1.0973378872717623|0.0298561740706011|5.2|151.0|61|3|anti-sense REV__L1MB7_dup5823|chr4:105250982-105251860:-|1.0973378872717623|0.0298561740706011|5.2|151.0|61|3|anti-sense MSMS UPN46_class_I_Rep_3 1 606.36083984375 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 29.455 1 29.455 28.955 29.955 0 0 0 0 0.40038 1 4667 4667 0.6015 0.076735 1 + 11882 26289 7402 7408 14818 14818 0.11180518724631838 HHFYWDGV 8 Unmodified _HHFYWDGV_ 0 0 0 REV__ENST00000462193.2_1_7:99720491-99722508:+|nuORF REV__ENST00000462193.2_1_7:99720491-99722508:+|nuORF MSMS UPN47_class_I_Rep_1 2 530.7351684570312 2 530.735409 1059.45626 NaN NaN NaN NaN NaN NaN NaN 69.485 1 72.853 72.353 73.353 3.3678 0 0 0 0.40738 1 16839 16839 0.79363 0 1 + 11883 20204 7403 7409 14819 14819 -0.071085390765802 HHHAGFFF 8 Unmodified _HHHAGFFF_ 0 0 0 AluSq2_dup49598|chr16:68194972-68195275:+|1.044685241142396|0.024298617372341|5.43|151.0|11|2|anti-sense AluSq2_dup49598|chr16:68194972-68195275:+|1.044685241142396|0.024298617372341|5.43|151.0|11|2|anti-sense AluSq2_dup49598|chr16:68194972-68195275:+|1.044685241142396|0.024298617372341|5.43|151.0|11|2|anti-sense MSMS UPN46_class_I_Rep_3 1 500.2571105957031 2 500.232836 998.45112 NaN NaN NaN NaN NaN NaN NaN 66.354 1 66.354 65.854 66.854 0 0 0 0 0.4032 1 15051 15051 6.3541 1.1234 1 11884 260 7404 7410 14820 14820 -0.048167981485335076 HHHHHYHQ 8 Unmodified _HHHHHYHQ_ 0 0 0 ENSG00000204314|ENST00000211413|PRRT1 ENSG00000204314|ENST00000211413|PRRT1 ENSG00000204314|ENST00000211413|PRRT1 MSMS UPN46_class_I_Rep_3 1 566.2816772460938 2 566.750247 1131.48594 NaN NaN NaN NaN NaN NaN NaN 23.686 1 23.686 23.186 24.186 0 0 0 0 0.40738 1 3010 3010 0.79363 0 1 11885 5517 7405 7411 14821 14821 -0.07454162287876898 HHHHQFHH 8 Unmodified _HHHHQFHH_ 0 0 0 REV__ENSG00000157450|ENST00000348370|RNF111 REV__ENSG00000157450|ENST00000348370|RNF111 MSMS UPN47_class_I_Rep_1 2 558.7522583007812 2 558.75279 1115.49103 NaN NaN NaN NaN NaN NaN NaN 115.87 1 119.47 118.97 119.97 3.5943 0 0 0 0.40738 1 28682 28682 0.79363 0 1 + 11886 19822 7406 7412 14822 14822 -0.06209858425245329 HHHLFSALR 9 Unmodified _HHHLFSALR_ 0 0 0 REV__chr5:146160486-146161164|62|11.69|0.32|5.17|-|2|TE_info:Tigger1,Tigger1_dup4460,TcMar-Tigger,DNA,donor,-,146161164,146161446|LARS1,None|9 REV__chr5:146160486-146161164|62|11.69|0.32|5.17|-|2|TE_info:Tigger1,Tigger1_dup4460,TcMar-Tigger,DNA,donor,-,146161164,146161446|LARS1,None|9 MSMS UPN48_class_I_Rep_1 5 559.294677734375 2 559.304324 1116.5941 NaN NaN NaN NaN NaN NaN NaN 56.811 1 60.313 59.813 60.813 3.5014 0 0 0 0.35339 1 12256 12256 7.9102 1.187 1 + 11887 17453 7407 7413 14823 14823 0.04046209242687837 HHHMALCL 8 Unmodified _HHHMALCL_ 0 0 0 L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|18|1|sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|18|1|sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 481.2776184082031 2 481.228382 960.442211 NaN NaN NaN NaN NaN NaN NaN 31.21 1 34.509 34.009 35.009 3.2991 0 0 0 0.40581 1 5288 5288 2.8892 2.0956 1 11888 13635 7408 7414 14824 14824 -0.03959231100895977 HHHMALCL 8 Unmodified _HHHMALCL_ 0 0 0 L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|18|1|sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|18|1|sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 481.27880859375 2 481.228382 960.442211 NaN NaN NaN NaN NaN NaN NaN 35.504 1 38.759 38.259 39.259 3.2547 0 0 0 0.40581 1 6584 6584 2.8892 0 1 11889 13635 7408 7414 14825 14825 -0.03959231100895977 HHHPRGLF 8 Unmodified _HHHPRGLF_ 0 0 0 REV__MSTA_dup851|chr1:176071038-176071440:+|1.3578795531246766|0.0169413265074014|6.32|151.0|24|2|anti-sense REV__MSTA_dup851|chr1:176071038-176071440:+|1.3578795531246766|0.0169413265074014|6.32|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_3 4 500.766357421875 2 500.764835 999.515117 NaN NaN NaN NaN NaN NaN NaN 22.783 1 26.134 25.634 26.634 3.3503 0 0 0 0.40738 1 2784 2784 0.79363 0 1 + 11890 31853 7409 7415 14826 14826 0.01533982008413659 HHHPRGLF 8 Unmodified _HHHPRGLF_ 0 0 0 REV__MSTA_dup851|chr1:176071038-176071440:+|1.3578795531246766|0.0169413265074014|6.32|151.0|24|2|anti-sense REV__MSTA_dup851|chr1:176071038-176071440:+|1.3578795531246766|0.0169413265074014|6.32|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 500.33807373046875 2 500.764835 999.515117 NaN NaN NaN NaN NaN NaN NaN 113.65 1 117.3 116.8 117.8 3.6568 0 0 0 0.40738 1 27029 27029 0.79363 0 1 + 11891 31853 7409 7415 14827 14827 0.01533982008413659 HHHSQLIVF 9 Unmodified _HHHSQLIVF_ 0 0 0 AluJr_dup29589|chr7:5330232-5330538:-|1.4704790805008343|0.1123801786221104|3.71|151.0|20|3|anti-sense AluJr_dup29589|chr7:5330232-5330538:-|1.4704790805008343|0.1123801786221104|3.71|151.0|20|3|anti-sense AluJr_dup29589|chr7:5330232-5330538:-|1.4704790805008343|0.1123801786221104|3.71|151.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 559.2944946289062 2 559.298707 1116.58286 NaN NaN NaN NaN NaN NaN NaN 71.584 1 71.584 71.084 72.084 0 0 0 0 0.39598 1 16499 16499 1.6526 0 1 11892 142 7410 7416 14828 14828 0.02923387148553047 HHHTWLIFF 9 Unmodified _HHHTWLIFF_ 0 0 0 AluJr_dup50194|chr10:103116601-103116874:-|1.1083981677439356|0.1241530080365038|3.16|151.0|14|1|anti-sense;AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense;AluJb_dup3852|chr1:44480124-44480409:+|1.8825513842400328|0.000491934635769|11.9|149.0|17|2|anti-sense;AluSx_dup58025|chrX:1494711-1495016:-|2.167663453886421|0.0196981212522355|6.78|151.0|20|3|anti-sense AluJr_dup50194|chr10:103116601-103116874:-|1.1083981677439356|0.1241530080365038|3.16|151.0|14|1|anti-sense AluJr_dup50194|chr10:103116601-103116874:-|1.1083981677439356|0.1241530080365038|3.16|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 619.31787109375 2 619.3169 1236.61925 NaN NaN NaN NaN NaN NaN NaN 67.208 1 70.569 70.069 71.069 3.3611 0 0 0 0.40038 1 16147 16147 0.6015 0 1 11893 47 7411 7417 14829 14829 0.010402640452639389 HHICHCGGGGC 11 Unmodified _HHICHCGGGGC_ 0 0 0 ENST00000505767.1_1_4:78909596-78909860:-|nuORF ENST00000505767.1_1_4:78909596-78909860:-|nuORF ENST00000505767.1_1_4:78909596-78909860:-|nuORF MSMS UPN48_class_I_Rep_1 5 540.8046264648438 2 540.699663 1079.38477 NaN NaN NaN NaN NaN NaN NaN 37.375 1 40.882 40.382 41.382 3.507 0 0 0 0.38417 1 6351 6351 0 0 1 11894 7153 7412 7418 14830 14830 -0.15174441368731095 HHIHRMKK 8 Unmodified _HHIHRMKK_ 0 0 0 REV__L1PA7_dup11017|chr13:72947639-72948239:+|1.0443709482894736|0.0099046340509578|6.72|151.0|2|1|sense REV__L1PA7_dup11017|chr13:72947639-72948239:+|1.0443709482894736|0.0099046340509578|6.72|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 543.8078002929688 2 543.808719 1085.60289 NaN NaN NaN NaN NaN NaN NaN 67.192 1 67.192 66.692 67.692 0 0 0 0 0.40738 1 15281 15281 0.79363 0 1 + 11895 29990 7413 7419 14831 14831 0.06350859607528037 HHIKKIKIK 9 Unmodified _HHIKKIKIK_ 0 0 0 L1ME3A_dup5109|chr5:87301805-87302504:-|1.15055340766647|0.0276544831226302|5.38|151.0|12|2|sense L1ME3A_dup5109|chr5:87301805-87302504:-|1.15055340766647|0.0276544831226302|5.38|151.0|12|2|sense L1ME3A_dup5109|chr5:87301805-87302504:-|1.15055340766647|0.0276544831226302|5.38|151.0|12|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 572.696533203125 2 572.887493 1143.76043 0.45243 0.00025919 0.59157 0.00033891 1.044 0.0005981 573.3881033665241 75.153 0.036209 75.153 75.132 75.168 0 4 2 2 0 0 0 0.12532 1 17454 17454 0.52476 0 1 34394 11896 12669 7414 7420 14832 14832 0.19430262418541133 HHIKKLKLI 9 Unmodified _HHIKKLKLI_ 0 0 0 REV__L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|3|1|sense REV__L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 565.3831787109375 2 565.382043 1128.74953 NaN NaN NaN NaN NaN NaN NaN 110.01 1 110.01 109.51 110.51 0 0 0 0 0.40038 1 27072 27072 0.6015 0.25087 1 + 11897 28355 7415 7421 14833 14833 0.19030860044267683 HHILKKIHW 9 Unmodified _HHILKKIHW_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense;REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|57|2|sense REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|57|2|sense MSMS UPN46_class_I_Rep_3 1 606.361572265625 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 110.47 1 110.47 109.97 110.97 0 0 0 0 0.4007 1 27207 27207 0.52476 0 1 + 11898 30138;30282 7416 7422 14834 14834 0.11180518724654576 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.6060791015625 3 439.27143 1314.79246 0.0092409 4.0593E-06 -0.082679 -3.6319E-05 -0.073438 -3.2259E-05 439.271326637004 35.671 0.53264 39.181 38.784 39.316 3.5101 87 52 2 0 0 0 0.56433 3 5776 5776;5824;5861 0.77653 0.61721 1 141480 + 11899 28991 7417 7423 14835;14836;14837 14835 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.2712097167969 3 439.27143 1314.79246 0.0080376 3.5307E-06 0.039314 1.727E-05 0.047352 2.08E-05 439.6058863636872 35.879 0.26433 39.389 39.295 39.559 3.5101 35 26 2 0 0 0 0.56433 1 5930 5930 0.77653 0.27058 1 134690 + 11900 28991 7417 7423 14838 14838 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.2710266113281 3 439.27143 1314.79246 0.0015937 7.0008E-07 -0.22561 -9.9105E-05 -0.22402 -9.8405E-05 439.27121725065507 37.352 0.49799 40.859 40.583 41.081 3.507 97 53 3 0 0 0 0.56433 1 6377 6377 0.77653 0 1 175810 + 11901 28991 7417 7423 14839 14839 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 439.2710876464844 3 439.27143 1314.79246 0.08531 3.7474E-05 -0.19224 -8.4447E-05 -0.10693 -4.6973E-05 439.27127376547236 37.157 0.3782 40.859 40.614 40.992 3.7022 70 40 3 0 0 0 0.56433 1 6290 6290 0.77653 0 1 118160 + 11902 28991 7417 7423 14840 14840 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MSMS UPN48_class_I_Rep_2 6 439.27130126953125 3 439.27143 1314.79246 NaN NaN NaN NaN NaN NaN NaN 35.261 1 38.934 38.434 39.434 3.6735 0 0 0 0.53105 1 5790 5790 0.77653 0.078866 1 + 11903 28991 7417 7423 14841 14841 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.27093505859375 3 439.27143 1314.79246 0.049559 2.177E-05 -0.65021 -0.00028562 -0.60065 -0.00026385 439.27099276108623 34.989 0.14027 38.661 38.565 38.705 3.6721 24 16 2 0 0 0 0.56433 1 5608 5608 0.77653 0.14971 1 122010 + 11904 28991 7417 7423 14842 14842 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.27142333984375 3 439.27143 1314.79246 0.0503 2.2095E-05 -0.063112 -2.7723E-05 -0.012812 -5.6277E-06 439.27130879901523 35.371 0.5385 39.043 38.82 39.358 3.6721 88 55 3 0 0 0 0.56433 1 5794 5794 0.77653 0.27058 1 142710 + 11905 28991 7417 7423 14843 14843 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.2712097167969 3 439.27143 1314.79246 0.052334 2.2989E-05 0.059829 2.6281E-05 0.11216 4.927E-05 439.6056904447179 36.736 0.15456 40.399 40.352 40.507 3.663 27 16 3 0 0 0 0.56433 1 6134 6134 0.77653 0.27058 1 83132 + 11906 28991 7417 7423 14844 14844 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.2708435058594 3 439.27143 1314.79246 0.052837 2.321E-05 -0.33445 -0.00014691 -0.28161 -0.0001237 439.2711741598156 37.046 0.66172 40.709 40.507 41.168 3.663 91 68 2 0 0 0 0.56433 2 6173 6173;6209 0.77653 0.27058 1 156440 + 11907 28991 7417 7423 14845;14846 14845 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 439.27143 1314.79246 -0.38975 -0.00017121 0.24256 0.00010655 -0.1472 -6.466E-05 439.2713289649612 35.315 0.076035 38.991 38.956 39.032 3.6762 -0.15003 0.00033414 NaN 0.77653 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 24651 + 11908 28991 7417 7423 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 439.27143 1314.79246 -0.38837 -0.0001706 0.42486 0.00018663 0.036492 1.603E-05 439.271583490638 35.664 0.060287 39.34 39.31 39.37 3.6762 0.03411 0.00052519 NaN 0.77653 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 17777 + 11909 28991 7417 7423 0.14765630101692295 HHILKKILWQ 10 Unmodified _HHILKKILWQ_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|57|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 439.27143 1314.79246 0.093534 4.1087E-05 0.19785 8.6911E-05 0.29139 0.000128 439.2713764036151 35.71 0.22812 39.398 39.319 39.548 3.6877 0.091597 0.00022603 NaN 0.77653 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 135410 + 11910 28991 7417 7423 0.14765630101692295 HHILTAESI 9 Unmodified _HHILTAESI_ 0 0 0 REV__L1MC1_dup2327|chr3:50017956-50018581:-|3.873346143574201|0.0242215983151861|7.32|151.0|33|2|anti-sense REV__L1MC1_dup2327|chr3:50017956-50018581:-|3.873346143574201|0.0242215983151861|7.32|151.0|33|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.77630615234375 2 510.777274 1019.53999 -0.17492 -8.9346E-05 -0.38603 -0.00019718 -0.56095 -0.00028652 510.77699469851467 38.806 0.52281 42.471 42.208 42.731 3.6652 64 33 3 0 0 0 0.33654 1 7524 7524 11.64 11.64 1 99077 + 11911 26540 7418 7424 14847 14847 0.031005723004682295 HHINKGKKLH 10 Unmodified _HHINKGKKLH_ 0 0 0 L1MB7_dup11454|chr9:137636220-137636857:-|1.530473980787986|0.0107920540168186|7.15|151.0|11|2|sense L1MB7_dup11454|chr9:137636220-137636857:-|1.530473980787986|0.0107920540168186|7.15|151.0|11|2|sense L1MB7_dup11454|chr9:137636220-137636857:-|1.530473980787986|0.0107920540168186|7.15|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 606.3606567382812 2 606.359631 1210.70471 NaN NaN NaN NaN NaN NaN NaN 34.565 1 34.565 34.065 35.065 0 0 0 0 0.53105 1 6187 6187 0.40072 0 1 11912 10683 7419 7425 14848 14848 0.10778429230936126 HHIRKLLNVI 10 Unmodified _HHIRKLLNVI_ 0 0 0 REV__Tigger1_dup11789|chr21:15045284-15047037:-|1.1938378184967433|0.1313163603673838|3.18|146.0|8|1|sense REV__Tigger1_dup11789|chr21:15045284-15047037:-|1.1938378184967433|0.1313163603673838|3.18|146.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 621.895751953125 2 621.893306 1241.77206 NaN NaN NaN NaN NaN NaN NaN 97.005 1 100.79 100.29 101.29 3.7804 0 0 0 0.53105 1 23053 23053 1.6526 0.32309 1 + 11913 32364 7420 7426 14849 14849 0.1608445944189043 HHIRRHTILI 10 Unmodified _HHIRRHTILI_ 0 0 0 L1MC4a_dup8279|chr15:55877005-55878099:-|1.0389676835566717|0.0368348838857771|4.82|150.0|62|2|anti-sense L1MC4a_dup8279|chr15:55877005-55878099:-|1.0389676835566717|0.0368348838857771|4.82|150.0|62|2|anti-sense L1MC4a_dup8279|chr15:55877005-55878099:-|1.0389676835566717|0.0368348838857771|4.82|150.0|62|2|anti-sense MSMS UPN48_class_I_Rep_3 7 648.3970336914062 2 648.394005 1294.77346 NaN NaN NaN NaN NaN NaN NaN 90.484 1 94.331 93.831 94.831 3.847 0 0 0 0.53105 1 21473 21473 1.6526 0.17072 1 11914 11620 7421 7427 14850 14850 0.13786093530643484 HHIRRLRLL 9 Unmodified _HHIRRLRLL_ 0 0 0 REV__ENSG00000198018|ENST00000370489|ENTPD7 REV__ENSG00000198018|ENST00000370489|ENTPD7 MSMS UPN47_class_I_Rep_2 3 404.79132080078125 3 405.263269 1212.76798 NaN NaN NaN NaN NaN NaN NaN 87.887 1 91.334 90.834 91.834 3.4471 0 0 0 0.3979 1 21850 21850 1.1933 0.41681 1 + 11915 21106 7422 7428 14851 14851 0.17010414738820145 HHIRTTKIN 9 Unmodified _HHIRTTKIN_ 0 0 0 REV__L1ME3E_dup721|chr2:171543676-171544503:-|1.047752110058152|0.073296455190579|3.84|151.0|21|2|sense REV__L1ME3E_dup721|chr2:171543676-171544503:-|1.047752110058152|0.073296455190579|3.84|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 560.3226928710938 2 560.322714 1118.63087 NaN NaN NaN NaN NaN NaN NaN 86.757 1 86.757 86.257 87.257 0 0 0 0 0.39428 1 20751 20751 2.0598 0 1 + 11916 28165 7423 7429 14852 14852 0.07630461068606564 HHITDAQAQAL 11 Unmodified _HHITDAQAQAL_ 0 0 0 REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|11|1|sense REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 402.2061462402344 3 402.207155 1203.59963 NaN NaN NaN NaN NaN NaN NaN 16.666 1 20.188 19.688 20.688 3.5224 0 0 0 0.38417 1 1109 1109 0.36667 0 1 + 11917 23703 7424 7430 14853 14853 0.005978432438496384 HHIVMKIH 8 Unmodified _HHIVMKIH_ 0 0 0 REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|5|1|sense REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 507.79541015625 2 507.786921 1013.55929 NaN NaN NaN NaN NaN NaN NaN 82.363 1 82.363 81.863 82.863 0 0 0 0 0.40604 1 19507 19507 2.5775 0.27475 1 + 11918 29216 7425 7431 14854 14854 0.05305250110382076 HHIWHIRN 8 Unmodified _HHIWHIRN_ 0 0 0 ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B MSMS UPN46_class_I_Rep_3 1 556.79638671875 2 556.796666 1111.57878 NaN NaN NaN NaN NaN NaN NaN 101.72 1 101.72 101.22 102.22 0 0 0 0 0.40746 1 24818 24818 0.69038 0 1 11919 3218 7426 7432 14855 14855 0.02745342445496135 HHKECFYF 8 Unmodified _HHKECFYF_ 0 0 0 REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|94|3|anti-sense REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|94|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.7432861328125 2 555.744919 1109.47529 NaN NaN NaN NaN NaN NaN NaN 28.217 1 31.551 31.051 32.051 3.3337 0 0 0 0.40659 1 4394 4394 1.8442 0.36234 1 + 11920 25925 7427 7433 14856 14856 -0.07507325777191909 HHKNTCIP 8 Unmodified _HHKNTCIP_ 0 0 0 L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|170|2|anti-sense L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|170|2|anti-sense L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|170|2|anti-sense MSMS UPN48_class_I_Rep_1 5 475.2750549316406 2 475.237261 948.45997 NaN NaN NaN NaN NaN NaN NaN 38.387 1 41.892 41.392 42.392 3.5052 0 0 0 0.40581 1 6644 6644 2.8892 0 1 11921 13559 7428 7434 14857 14857 -0.016321925743795873 HHKRTSKR 8 Unmodified _HHKRTSKR_ 0 0 0 REV__L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|77|3|sense REV__L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|77|3|sense MSMS UPN48_class_I_Rep_3 7 525.3084106445312 2 525.307398 1048.60024 NaN NaN NaN NaN NaN NaN NaN 48.567 1 52.199 51.699 52.699 3.6321 0 0 0 0.40746 1 9657 9657 0.69038 0 1 + 11922 24858 7429 7435 14858 14858 0.07788727474235202 HHKVLMPW 8 Unmodified _HHKVLMPW_ 0 0 0 L1PA6_dup5341|chr16:47422812-47425579:-|4.262315783860975|0.2087893921818787|4.35|151.0|148|3|anti-sense L1PA6_dup5341|chr16:47422812-47425579:-|4.262315783860975|0.2087893921818787|4.35|151.0|148|3|anti-sense L1PA6_dup5341|chr16:47422812-47425579:-|4.262315783860975|0.2087893921818787|4.35|151.0|148|3|anti-sense MSMS UPN48_class_I_Rep_1 5 524.6525268554688 2 524.281472 1046.54839 NaN NaN NaN NaN NaN NaN NaN 106.87 1 110.5 110 111 3.6299 0 0 0 0.40581 1 25745 25745 2.8892 0.82947 1 11923 14663 7430 7436 14859 14859 0.026978477360898978 HHLALKIGF 9 Unmodified _HHLALKIGF_ 0 0 0 ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 518.3087158203125 2 518.308544 1034.60253 0.30651 0.00015887 0.1222 6.3336E-05 0.42871 0.0002222 518.3085374211661 40.934 0.038849 40.934 40.922 40.961 0 6 2 3 0 0 0 0.48414 1 7982 7982 2.3027 0 1 2720500 11924 3503 7431 7437 14860 14860 0.08661763159329894 HHLCERLW 8 Unmodified _HHLCERLW_ 0 0 0 REV__L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|64|3|sense REV__L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|64|3|sense MSMS UPN47_class_I_Rep_1 2 547.272216796875 2 547.271635 1092.52872 NaN NaN NaN NaN NaN NaN NaN 22.944 1 26.649 26.149 27.149 3.7042 0 0 0 0.40746 1 2755 2755 0.69038 0 1 + 11925 24174 7432 7438 14861 14861 -0.013845282746842713 HHLFLDRL 8 Unmodified _HHLFLDRL_ 0 0 0 REV__SCGN|p.G239Wfs*5|1|0.08|ENSG00000079689|chr6:25701218-25701219|-/T|frameshift_variant REV__SCGN|p.G239Wfs*5|1|0.08|ENSG00000079689|chr6:25701218-25701219|-/T|frameshift_variant MSMS UPN48_class_I_Rep_1 5 525.7947998046875 2 525.795801 1049.57705 NaN NaN NaN NaN NaN NaN NaN 117.8 1 121.42 120.92 121.92 3.6215 0 0 0 0.40738 1 28713 28713 0.79363 0 1 + 11926 17897 7433 7439 14862 14862 0.054242886368683685 HHLFNREYF 9 Unmodified _HHLFNREYF_ 0 0 0 L1PA6_dup3222|chr8:120721744-120723114:-|1.1045649980709562|0.0810476719971355|3.77|151.0|76|2|anti-sense L1PA6_dup3222|chr8:120721744-120723114:-|1.1045649980709562|0.0810476719971355|3.77|151.0|76|2|anti-sense L1PA6_dup3222|chr8:120721744-120723114:-|1.1045649980709562|0.0810476719971355|3.77|151.0|76|2|anti-sense MSMS UPN48_class_I_Rep_1 5 631.80712890625 2 631.806897 1261.59924 NaN NaN NaN NaN NaN NaN NaN 67.704 1 71.155 70.655 71.655 3.4517 0 0 0 0.39518 1 15581 15581 1.8442 0.19162 1 11927 14607 7434 7440 14863 14863 -0.021095316853461554 HHLKVVIP 8 Unmodified _HHLKVVIP_ 0 0 0 L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|9|1|sense L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|9|1|sense L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 39.278 1 42.656 42.156 43.156 3.3785 0 0 0 0.40581 1 7696 7696 2.8892 0 1 11928 12483 7435 7441 14864 14864 0.1079437813059485 HHLKVVIP 8 Unmodified _HHLKVVIP_ 0 0 0 L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|9|1|sense L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|9|1|sense L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 471.7952880859375 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 32.863 1 36.149 35.649 36.649 3.2867 0 0 0 0.40581 1 5790 5790 2.8892 0.31174 1 11929 12483 7435 7441 14865 14865 0.1079437813059485 HHLLSIKKFCK 11 Unmodified _HHLLSIKKFCK_ 0 0 0 BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|50|2|anti-sense BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|50|2|anti-sense BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_1 5 451.9327392578125 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 91.906 1 95.532 95.032 96.032 3.626 0 0 0 0.38417 1 22090 22090 1.3296 0 1 11930 416 7436 7442 14866 14866 0.112819665043844 HHLQKSFY 8 Unmodified _HHLQKSFY_ 0 0 0 REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|45|1|anti-sense REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|45|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.773193359375 2 530.272158 1058.52976 0.12471 6.6131E-05 -0.55795 -0.00029586 -0.43324 -0.00022973 530.2717316647093 47.354 0.81364 51.049 50.673 51.486 3.6951 144 78 3 0 0 0 0.82752 1 10047 10047 21.747 0.20967 1 596560 + 11931 17302 7437 7443 14867 14867 0.0028400936589605408 HHLRCGEH 8 Unmodified _HHLRCGEH_ 0 0 0 SVA_D_dup1417|chr21:8350923-8352925:-|1.0917380734329667|0.0287746324772857|5.25|151.0|32|3|sense;SVA_D_dup1063|chr14:49820620-49822305:+|2.5987914187498093|0.2547499240644474|3.35|151.0|2|1|sense SVA_D_dup1417|chr21:8350923-8352925:-|1.0917380734329667|0.0287746324772857|5.25|151.0|32|3|sense SVA_D_dup1417|chr21:8350923-8352925:-|1.0917380734329667|0.0287746324772857|5.25|151.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 494.7187805175781 2 494.730135 987.445717 NaN NaN NaN NaN NaN NaN NaN 49.414 1 52.649 52.149 53.149 3.2345 0 0 0 0.40738 1 10829 10829 0.79363 0 1 11932 32849 7438 7444 14868 14868 -0.048508450026588434 HHLSWEWG 8 Unmodified _HHLSWEWG_ 0 0 0 ENSG00000242173|ENST00000219409|ARHGDIG ENSG00000242173|ENST00000219409|ARHGDIG ENSG00000242173|ENST00000219409|ARHGDIG MSMS UPN46_class_I_Rep_3 1 525.860595703125 2 526.240858 1050.46716 NaN NaN NaN NaN NaN NaN NaN 92.165 1 92.165 91.665 92.665 0 0 0 0 0.40738 1 22293 22293 0.79363 0 1 11933 5712 7439 7445 14869 14869 -0.056051367022973864 HHLTLSPR 8 Unmodified _HHLTLSPR_ 0 0 0 REV__ENST00000500698.1_1_11:9778373-9781063:-|nuORF REV__ENST00000500698.1_1_11:9778373-9781063:-|nuORF MSMS UPN48_class_I_Rep_2 6 480.7705078125 2 480.772326 959.530098 NaN NaN NaN NaN NaN NaN NaN 25.095 1 28.731 28.231 29.231 3.6363 0 0 0 0.40404 1 3008 3008 5.2307 2.3415 1 + 11934 22687 7440 7446 14870 14870 0.04871429085744694 HHMFHPIDK 9 Unmodified _HHMFHPIDK_ 0 0 0 REV__HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|224|1|anti-sense REV__HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|224|1|anti-sense MSMS UPN47_class_I_Rep_3 4 581.2830200195312 2 581.284743 1160.55493 NaN NaN NaN NaN NaN NaN NaN 83.483 1 86.833 86.333 87.333 3.35 0 0 0 0.39326 1 20939 20939 2.3027 0 1 + 11935 23820 7441 7447 14871 14871 -0.01892259103192373 HHMFHSYE 8 Unmodified _HHMFHSYE_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MSMS UPN47_class_I_Rep_2 3 544.2237548828125 2 544.224351 1086.43415 NaN NaN NaN NaN NaN NaN NaN 116.39 1 119.89 119.39 120.39 3.4965 0 0 0 0.40746 1 28415 28415 0.69038 0 1 + 11936 19459 7442 7448 14872 14872 -0.10561086816642273 HHMWTQEKQ 9 Unmodified _HHMWTQEKQ_ 0 0 0 REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 612.78076171875 2 612.782564 1223.55058 0.31302 0.00019182 -0.4323 -0.0002649 -0.11927 -7.3088E-05 612.7802588007182 47.339 0.53474 50.689 50.391 50.926 3.3498 100 34 4 0 0 0 0.50015 1 10175 10175 0.6015 0 1 192350 + 11937 25408 7443 7449 14873 14873 -0.05225768316745416 HHMWTQEKQ 9 Unmodified _HHMWTQEKQ_ 0 0 0 REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 612.782564 1223.55058 0.18902 0.00011583 -1.8934 -0.0011603 -1.7044 -0.0010444 612.7803314962111 47 0.54117 50.695 50.439 50.98 3.6951 -0.0017327 -0.00086364 NaN 0.6015 79 33 3 NaN NaN NaN NaN 0 NaN NaN 0 158910 + 11938 25408 7443 7449 -0.05225768316745416 HHMWTQEKQ 9 Unmodified _HHMWTQEKQ_ 0 0 0 REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 612.782564 1223.55058 0.31302 0.00019182 -0.4323 -0.0002649 -0.11927 -7.3088E-05 612.7802588007182 47.339 0.53474 50.689 50.391 50.926 3.3498 -0.0079645 0.00092706 NaN 0.6015 100 34 4 NaN NaN NaN NaN 0 NaN NaN 0 192350 + 11939 25408 7443 7449 -0.05225768316745416 HHMWTQEKQ 9 Unmodified _HHMWTQEKQ_ 0 0 0 REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense REV__L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|60|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 612.782564 1223.55058 0.35113 0.00021517 -0.2856 -0.00017501 0.065525 4.0153E-05 612.780271343549 47.466 0.4277 50.707 50.392 50.82 3.2405 0.0096973 0.0011068 NaN 0.6015 68 28 4 NaN NaN NaN NaN 0 NaN NaN 0 167240 + 11940 25408 7443 7449 -0.05225768316745416 HHNKHDSN 8 Unmodified _HHNKHDSN_ 0 0 0 REV__L1MC3_dup5844|chr7:150225047-150226423:-|1.128684176498378|0.473835464988768|1.25|151.0|6|1|sense REV__L1MC3_dup5844|chr7:150225047-150226423:-|1.128684176498378|0.473835464988768|1.25|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 494.7189025878906 2 494.720821 987.42709 NaN NaN NaN NaN NaN NaN NaN 35.398 1 38.908 38.408 39.408 3.5101 0 0 0 0.40472 1 5785 5785 4.3292 1.44 1 + 11941 26767 7444 7450 14874 14874 -0.06712683372859374 HHNKNEKSG 9 Unmodified _HHNKNEKSG_ 0 0 0 L1MA2_dup3604|chr9:131928295-131930106:+|1.1032163856954316|0.028817712180326|5.26|151.0|19|2|sense L1MA2_dup3604|chr9:131928295-131930106:+|1.1032163856954316|0.028817712180326|5.26|151.0|19|2|sense L1MA2_dup3604|chr9:131928295-131930106:+|1.1032163856954316|0.028817712180326|5.26|151.0|19|2|sense MSMS UPN47_class_I_Rep_2 3 525.7589111328125 2 525.757404 1049.50025 NaN NaN NaN NaN NaN NaN NaN 28.414 1 31.913 31.413 32.413 3.4986 0 0 0 0.39428 1 4405 4405 2.0598 0 1 11942 9365 7445 7451 14875 14875 -0.02251554650251819 HHNLCCPGSS 10 Unmodified _HHNLCCPGSS_ 0 0 0 AluSg_dup30763|chr17:30775682-30775982:+|1.2080984882157542|0.0909925011059092|3.73|151.0|20|3|anti-sense;ENSG00000264538.6,SUZ12P1,chr17,+,I8.1,30759540,30766502|37|20.07|2|intron AluSg_dup30763|chr17:30775682-30775982:+|1.2080984882157542|0.0909925011059092|3.73|151.0|20|3|anti-sense AluSg_dup30763|chr17:30775682-30775982:+|1.2080984882157542|0.0909925011059092|3.73|151.0|20|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.7142944335938 2 527.713293 1053.41203 0.32975 0.00017401 0.61814 0.0003262 0.9479 0.00050022 527.7134533472355 80.771 0.5201 84.333 84.179 84.699 3.5624 100 67 2 0 0 0 0.54822 2 19237 19237;19266 5.7319 0 1 377590 11943 216 7446 7452 14876;14877 14876 -0.1125363455673778 HHPKRFIFVHQ 11 Unmodified _HHPKRFIFVHQ_ 0 0 0 REV__L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|105|3|sense REV__L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|105|3|sense MSMS UPN47_class_I_Rep_1 2 482.6030578613281 3 482.60195 1444.78402 NaN NaN NaN NaN NaN NaN NaN 30.374 1 34.118 33.618 34.618 3.7449 0 0 0 0.38417 1 4958 4958 1.3296 0 1 + 11944 30057 7447 7453 14878 14878 0.07942076185054248 HHPNRPQC 8 Unmodified _HHPNRPQC_ 0 0 0 L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|134|2|anti-sense L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|134|2|anti-sense L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|134|2|anti-sense MSMS UPN47_class_I_Rep_1 2 494.71856689453125 2 494.730135 987.445717 NaN NaN NaN NaN NaN NaN NaN 115.39 1 118.99 118.49 119.49 3.5943 0 0 0 0.40604 1 28549 28549 2.5775 0 1 11945 13661 7448 7454 14879 14879 -0.048508450026588434 HHPPHHHAPPL 11 Unmodified _HHPPHHHAPPL_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MSMS UPN48_class_I_Rep_2 6 638.8267211914062 2 638.825955 1275.63736 NaN NaN NaN NaN NaN NaN NaN 38.807 1 42.537 42.037 43.037 3.7297 0 0 0 0.38417 1 6808 6808 1.4819 0.15237 1 + 11946 19910 7449 7455 14880 14880 0.010563990199898399 HHPQLRKH 8 Unmodified _HHPQLRKH_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|86|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|86|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|86|2|sense MSMS UPN48_class_I_Rep_1 5 526.797607421875 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 22.042 1 25.595 25.095 26.095 3.5533 0 0 0 0.40746 1 2099 2099 0.69038 0 1 11947 9427 7450 7456 14881 14881 0.05505342445508177 HHPQPERLWP 10 Unmodified _HHPQPERLWP_ 0 0 0 REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF MSMS UPN46_class_I_Rep_3 1 432.8851013183594 3 432.891389 1295.65234 NaN NaN NaN NaN NaN NaN NaN 97.102 1 97.102 96.602 97.602 0 0 0 0 0.53105 1 23618 23618 0.15932 0 1 + 11948 22732 7451 7457 14882 14882 0.016338460973202018 HHPVGCRHDW 10 Unmodified _HHPVGCRHDW_ 0 0 0 REV__AluJb_dup74739|chr10:102658908-102659208:+|1.028485596874242|0.1970579176415522|2.38|151.0|17|3|anti-sense REV__AluJb_dup74739|chr10:102658908-102659208:+|1.028485596874242|0.1970579176415522|2.38|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_1 5 622.2826538085938 2 622.280523 1242.54649 NaN NaN NaN NaN NaN NaN NaN 71.886 1 75.352 74.852 75.852 3.466 0 0 0 0.53105 1 16839 16839 1.4819 0.28856 1 + 11949 16958 7452 7458 14883 14883 -0.06507813019788955 HHPWKTFY 8 Unmodified _HHPWKTFY_ 0 0 0 REV__L1MB8_dup8786|chrX:40719002-40719826:+|2.40763953826502|0.1610133077272018|3.9|151.0|50|2|anti-sense REV__L1MB8_dup8786|chrX:40719002-40719826:+|2.40763953826502|0.1610133077272018|3.9|151.0|50|2|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2755126953125 2 558.274701 1114.53485 NaN NaN NaN NaN NaN NaN NaN 31.132 1 34.602 34.102 35.102 3.4691 0 0 0 0.40625 1 5231 5231 2.3027 0.24298 1 + 11950 26442 7453 7459 14884 14884 -0.0178368677150047 HHQPSNNDL 9 Unmodified _HHQPSNNDL_ 0 0 0 nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|1|intron;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|11|intron;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|6|intron;nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|7|intron;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|3|intron;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|8|intron;ENSG00000012048|ENST00000357654|BRCA1;ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|4|intron;nc|ENSG00000012048|P38398-7|BRCA1 nc|ENSG00000012048|P38398-6|BRCA1 nc|ENSG00000012048|P38398-6|BRCA1 MSMS UPN48_class_I_Rep_1 5 531.24072265625 2 531.241587 1060.46862 NaN NaN NaN NaN NaN NaN NaN 72.373 1 75.846 75.346 76.346 3.4732 0 0 0 0.39598 1 16980 16980 1.6526 0.17072 1 11951 779 7454 7460 14885 14885 -0.059195474042098795 HHRCYEEI 8 Unmodified _HHRCYEEI_ 0 0 0 L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|16|1|sense L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|16|1|sense L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 543.7425537109375 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 111.5 1 111.5 111 112 0 0 0 0 0.40604 1 27496 27496 2.5775 0 1 11952 14331 7455 7461 14886 14886 -0.06805415270878257 HHRHLQKY 8 Unmodified _HHRHLQKY_ 0 0 0 REV__nc|ENSG00000075651|Q13393-4|PLD1 REV__nc|ENSG00000075651|Q13393-4|PLD1 MSMS UPN47_class_I_Rep_3 4 559.8020629882812 2 559.801949 1117.58934 NaN NaN NaN NaN NaN NaN NaN 26.446 1 29.794 29.294 30.294 3.3478 0 0 0 0.40746 1 3868 3868 0.69038 0 1 + 11953 17859 7456 7462 14887 14887 0.03525325099940346 HHRLETKKK 9 Unmodified _HHRLETKKK_ 0 0 0 ENST00000321870.2_1_8:65492938-65493277:+|nuORF ENST00000321870.2_1_8:65492938-65493277:+|nuORF ENST00000321870.2_1_8:65492938-65493277:+|nuORF MSMS UPN46_class_I_Rep_3 1 588.8516845703125 2 588.851638 1175.68872 NaN NaN NaN NaN NaN NaN NaN 110.39 1 110.39 109.89 110.89 0 0 0 0 0.40038 1 27188 27188 0.6015 0 1 11954 6153 7457 7463 14888 14888 0.10790722994033786 HHRPPALF 8 Unmodified _HHRPPALF_ 0 0 0 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 MSMS UPN48_class_I_Rep_1 5 487.76788330078125 2 487.769586 973.524619 NaN NaN NaN NaN NaN NaN NaN 28.15 1 31.708 31.208 32.208 3.5571 0 0 0 0.40404 1 3728 3728 5.2307 0.47466 1 + 11955 19174 7458 7464 14889 14889 0.036797502939293736 HHRSMMMPV 9 Unmodified _HHRSMMMPV_ 0 0 0 L1M5_dup569|chr1:35994249-35994951:+|1.882277012667355|0.026544747526747|6.15|151.0|31|1|anti-sense L1M5_dup569|chr1:35994249-35994951:+|1.882277012667355|0.026544747526747|6.15|151.0|31|1|anti-sense L1M5_dup569|chr1:35994249-35994951:+|1.882277012667355|0.026544747526747|6.15|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.2595825195312 2 563.259356 1124.50416 0.22615 0.00012738 -0.20095 -0.00011319 0.025206 1.4198E-05 563.2589857310663 49.621 0.34247 53.28 53.04 53.383 3.6592 36 22 2 0 0 0 0.48414 1 10775 10775 2.3027 0 1 67536 11956 9204 7459 7465 14890 14890 -0.05311247744043612 HHRVVTRVL 9 Unmodified _HHRVVTRVL_ 0 0 0 REV__ENSG00000183495.14,EP400,chr12,+,I12.1,131992231,131994866|28|7.94|5|intron REV__ENSG00000183495.14,EP400,chr12,+,I12.1,131992231,131994866|28|7.94|5|intron MSMS UPN47_class_I_Rep_1 2 558.7510986328125 2 558.841074 1115.66759 NaN NaN NaN NaN NaN NaN NaN 21.08 1 24.723 24.223 25.223 3.6436 0 0 0 0.40038 1 2231 2231 0.6015 0 1 + 11957 20789 7460 7466 14891 14891 0.11438757685186829 HHSHLIIY 8 Unmodified _HHSHLIIY_ 0 0 0 REV__L1MB7_dup14647|chr11:17293391-17294060:+|1.0080747722661083|0.0117244054849226|6.43|151.0|46|2|anti-sense REV__L1MB7_dup14647|chr11:17293391-17294060:+|1.0080747722661083|0.0117244054849226|6.43|151.0|46|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.2744445800781 2 510.274701 1018.53485 0.20634 0.00010529 -0.24199 -0.00012348 -0.035648 -1.819E-05 510.2745249850932 69.468 0.084297 72.836 72.802 72.886 3.3678 9 7 2 0 0 0 0.82752 1 16837 16837 26.341 0 1 72143 + 11958 26144 7461 7467 14892 14892 0.026323132285142492 HHSLSVTKKS 10 Unmodified _HHSLSVTKKS_ 0 0 0 REV__Tigger1_dup8977|chr12:21457901-21459032:-|1.113764223669975|0.2808575284757412|1.99|150.0|47|1|anti-sense REV__Tigger1_dup8977|chr12:21457901-21459032:-|1.113764223669975|0.2808575284757412|1.99|150.0|47|1|anti-sense MSMS UPN48_class_I_Rep_3 7 562.334716796875 2 562.314554 1122.61456 NaN NaN NaN NaN NaN NaN NaN 109.22 1 112.9 112.4 113.4 3.6751 0 0 0 0.53105 1 25927 25927 3.5965 0.31518 1 + 11959 32555 7462 7468 14893 14893 0.05815335111856257 HHSNLLAAS 9 Unmodified _HHSNLLAAS_ 0 0 0 REV__ENSG00000130699|ENST00000252996|TAF4 REV__ENSG00000130699|ENST00000252996|TAF4 MSMS UPN47_class_I_Rep_3 4 475.26019287109375 2 475.246141 948.477728 NaN NaN NaN NaN NaN NaN NaN 35.282 1 38.546 38.046 39.046 3.2639 0 0 0 0.38639 1 6517 6517 3.9444 0.3479 1 + 11960 18947 7463 7469 14894 14894 0.0014284595214348883 HHSWLFFF 8 Unmodified _HHSWLFFF_ 0 0 0 AluJr4_dup12934|chr11:66629794-66630099:+|1.4238882972064797|0.1249936753910638|3.51|151.0|19|3|anti-sense AluJr4_dup12934|chr11:66629794-66630099:+|1.4238882972064797|0.1249936753910638|3.51|151.0|19|3|anti-sense AluJr4_dup12934|chr11:66629794-66630099:+|1.4238882972064797|0.1249936753910638|3.51|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_2 3 560.7724609375 2 560.771794 1119.52904 NaN NaN NaN NaN NaN NaN NaN 66.327 1 69.586 69.086 70.086 3.2588 0 0 0 0.40581 1 15928 15928 2.8892 0 1 11961 192 7464 7470 14895 14895 -0.025947852831677665 HHTNQSGW 8 Unmodified _HHTNQSGW_ 0 0 0 REV__Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|88|3|anti-sense REV__Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|88|3|anti-sense MSMS UPN47_class_I_Rep_2 3 483.7116394042969 2 483.712465 965.410377 NaN NaN NaN NaN NaN NaN NaN 19.906 1 23.302 22.802 23.802 3.3963 0 0 0 0.40738 1 1967 1967 0.79363 0 1 + 11962 32554 7465 7471 14896 14896 -0.07371184258818175 HHTWLLFVF 9 Unmodified _HHTWLLFVF_ 0 0 0 ENSG00000072736.19,NFATC3,chr16,+,I8.1,68126611,68138510|25|13.48|1|intron ENSG00000072736.19,NFATC3,chr16,+,I8.1,68126611,68138510|25|13.48|1|intron ENSG00000072736.19,NFATC3,chr16,+,I8.1,68126611,68138510|25|13.48|1|intron MSMS UPN46_class_I_Rep_3 1 600.3228759765625 2 600.321651 1198.62875 NaN NaN NaN NaN NaN NaN NaN 110.55 1 110.55 110.05 111.05 0 0 0 0 0.39428 1 27229 27229 2.0598 0 1 11963 1103 7466 7472 14897 14897 0.03738032330807073 HHVAQAGLQY 10 Unmodified _HHVAQAGLQY_ 0 0 0 AluJb_dup86750|chr12:116224681-116224992:-|1.2107702984255329|0.0126318156458823|6.58|151.0|22|3|anti-sense AluJb_dup86750|chr12:116224681-116224992:-|1.2107702984255329|0.0126318156458823|6.58|151.0|22|3|anti-sense AluJb_dup86750|chr12:116224681-116224992:-|1.2107702984255329|0.0126318156458823|6.58|151.0|22|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.2855834960938 2 562.285797 1122.55704 0.032039 1.8015E-05 -0.89153 -0.0005013 -0.85949 -0.00048328 562.2849819939502 42.539 0.93483 46.226 45.83 46.765 3.6875 141 65 3 0 0 0 0.56078 1 8802 8802 3.2813 1.2216 1 342420 11964 76 7467 7473 14898 14898 0.0006649290628502058 HHVHHILK 8 Unmodified _HHVHHILK_ 0 0 0 REV__L1PA2_dup4053|chr13:50982055-50988070:+|3.9680787798677137|0.1387446521427328|4.84|151.0|162|3|sense REV__L1PA2_dup4053|chr13:50982055-50988070:+|3.9680787798677137|0.1387446521427328|4.84|151.0|162|3|sense MSMS UPN47_class_I_Rep_1 2 511.240966796875 2 510.796135 1019.57772 NaN NaN NaN NaN NaN NaN NaN 30.769 1 34.514 34.014 35.014 3.7449 0 0 0 0.40581 1 5072 5072 2.8892 2.0956 1 + 11965 29493 7468 7474 14899 14899 0.06871128076613786 HHVHIPEV 8 Unmodified _HHVHIPEV_ 0 0 0 ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF ENSG00000128815|ENST00000325239|WDFY4 ENSG00000128815|ENST00000325239|WDFY4 MSMS UPN47_class_I_Rep_1 2 484.2584228515625 2 484.259051 966.503549 NaN NaN NaN NaN NaN NaN NaN 19.41 1 23.022 22.522 23.522 3.6118 0 0 0 0.40738 1 1780 1780 0.79363 0 1 11966 2602 7469 7475 14900 14900 0.018957401944248886 HHVIYSMHQL 10 Unmodified _HHVIYSMHQL_ 0 0 0 REV__LTR70_dup31|chr7:64687550-64688257:+|2.3164987355452613|0.3051429841383287|2.92|151.0|49|3|anti-sense REV__LTR70_dup31|chr7:64687550-64688257:+|2.3164987355452613|0.3051429841383287|2.92|151.0|49|3|anti-sense MSMS UPN48_class_I_Rep_2 6 632.8140258789062 2 632.816407 1263.61826 NaN NaN NaN NaN NaN NaN NaN 49.492 1 53.187 52.687 53.687 3.6946 0 0 0 0.53105 1 10006 10006 2.7352 0.89096 1 + 11967 31001 7470 7476 14901 14901 -0.0030031838593913562 HHVRSPQCK 9 Unmodified _HHVRSPQCK_ 0 0 0 REV__ENSG00000197461|ENST00000402802|PDGFA REV__ENSG00000197461|ENST00000402802|PDGFA MSMS UPN48_class_I_Rep_3 7 546.2796020507812 2 546.279992 1090.54543 NaN NaN NaN NaN NaN NaN NaN 41.418 1 45.064 44.564 45.564 3.6458 0 0 0 0.39518 1 7478 7478 1.8442 0 1 + 11968 21085 7471 7477 14902 14902 0.0037797261129526305 HHVSSRIFL 9 Unmodified _HHVSSRIFL_ 0 0 0 REV__ENSG00000102384|ENST00000682095|CENPI REV__ENSG00000102384|ENST00000682095|CENPI MSMS UPN47_class_I_Rep_3 4 548.3076171875 2 548.306532 1094.59851 NaN NaN NaN NaN NaN NaN NaN 95.964 1 99.373 98.873 99.873 3.4095 0 0 0 0.031663 1 23832 23832 43.858 0 1 + 11969 18194 7472 7478 14903 14903 0.05499673665599403 HHVTEEKTE 9 Unmodified _HHVTEEKTE_ 0 0 0 ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL MSMS UPN47_class_I_Rep_1 2 555.2643432617188 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 19.504 1 23.116 22.616 23.616 3.6118 0 0 0 0.40038 1 1807 1807 0.6015 0 1 11970 4816 7473 7479 14904 14904 -0.03501527292746687 HHWCPRNGR 9 Unmodified _HHWCPRNGR_ 0 0 0 L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|51|3|sense L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|51|3|sense L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|51|3|sense MSMS UPN47_class_I_Rep_1 2 581.7769165039062 2 581.775408 1161.53626 NaN NaN NaN NaN NaN NaN NaN 112.11 1 115.68 115.18 116.18 3.572 0 0 0 0.40038 1 27666 27666 0.6015 0.076735 1 11971 8694 7474 7480 14905 14905 -0.03804375954382522 HHWGSDLVIQ 10 Unmodified _HHWGSDLVIQ_ 0 0 0 REV__L1MB5_dup1349|chr3:136707963-136708638:+|1.849406887595943|0.0227268902975027|6.35|151.0|53|3|anti-sense REV__L1MB5_dup1349|chr3:136707963-136708638:+|1.849406887595943|0.0227268902975027|6.35|151.0|53|3|anti-sense MSMS UPN48_class_I_Rep_1 5 596.7839965820312 2 596.298904 1190.58326 NaN NaN NaN NaN NaN NaN NaN 69.349 1 72.804 72.304 73.304 3.4548 0 0 0 0.53105 1 16082 16082 1.4819 0.28856 1 + 11972 26033 7475 7481 14906 14906 -0.004412379222458185 HHWHVGGQ 8 Unmodified _HHWHVGGQ_ 0 0 0 REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|267|1|anti-sense REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|267|1|anti-sense MSMS UPN47_class_I_Rep_1 2 478.97454833984375 2 479.225543 956.436532 NaN NaN NaN NaN NaN NaN NaN 79.164 1 82.61 82.11 83.11 3.4456 0 0 0 0.40738 1 19713 19713 0.79363 0 1 + 11973 25289 7476 7482 14907 14907 -0.04342870296670753 HHWLLLPA 8 Unmodified _HHWLLLPA_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|58|2|sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|58|2|sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|58|2|sense MSMS UPN48_class_I_Rep_3 7 494.27001953125 2 493.782162 985.549771 NaN NaN NaN NaN NaN NaN NaN 29.213 1 32.942 32.442 33.442 3.7286 0 0 0 0.40738 1 4071 4071 0.79363 0 1 11974 13614 7477 7483 14908 14908 0.056418050965021393 HHWYNWINI 9 Unmodified _HHWYNWINI_ 0 0 0 L1MCa_dup3492|chr8:47333906-47335437:-|1.584326415201576|0.014657962445322|6.76|150.0|72|1|anti-sense L1MCa_dup3492|chr8:47333906-47335437:-|1.584326415201576|0.014657962445322|6.76|150.0|72|1|anti-sense L1MCa_dup3492|chr8:47333906-47335437:-|1.584326415201576|0.014657962445322|6.76|150.0|72|1|anti-sense MSMS UPN48_class_I_Rep_3 7 641.810546875 2 641.809439 1281.60433 NaN NaN NaN NaN NaN NaN NaN 37.776 1 41.436 40.936 41.936 3.6595 0 0 0 0.40038 1 6408 6408 0.6015 0 1 11975 11797 7478 7484 14909 14909 -0.025212278227172646 HHYAHTDS 8 Unmodified _HHYAHTDS_ 0 0 0 ENST00000581294.2_1_17:25410585-25410780:-|nuORF ENST00000581294.2_1_17:25410585-25410780:-|nuORF ENST00000581294.2_1_17:25410585-25410780:-|nuORF MSMS UPN48_class_I_Rep_2 6 484.2064514160156 2 484.204473 966.394393 NaN NaN NaN NaN NaN NaN NaN 18.636 1 22.287 21.787 22.787 3.6509 0 0 0 0.40738 1 1281 1281 0.79363 0 1 11976 7559 7479 7485 14910 14910 -0.09014890495723193 HHYMPTWVT 9 Unmodified _HHYMPTWVT_ 0 0 0 AluJr_dup13552|chr3:23862724-23862987:-|1.004095772139062|0.0164108413787977|5.94|151.0|13|3|sense AluJr_dup13552|chr3:23862724-23862987:-|1.004095772139062|0.0164108413787977|5.94|151.0|13|3|sense AluJr_dup13552|chr3:23862724-23862987:-|1.004095772139062|0.0164108413787977|5.94|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 586.2687377929688 2 586.271301 1170.52805 NaN NaN NaN NaN NaN NaN NaN 52.105 1 55.31 54.81 55.81 3.2055 0 0 0 0.38478 1 11652 11652 4.3292 0.73274 1 11977 132 7480 7486 14911 14911 -0.05039367714380205 HHYMWHFII 9 Unmodified _HHYMWHFII_ 0 0 0 REV__L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|62|1|anti-sense REV__L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|62|1|anti-sense MSMS UPN47_class_I_Rep_1 2 642.3087158203125 2 642.310761 1282.60697 NaN NaN NaN NaN NaN NaN NaN 34.621 1 38.306 37.806 38.806 3.6859 0 0 0 0.40038 1 6253 6253 0.6015 0 1 + 11978 26632 7481 7487 14912 14912 -0.023030956894217525 HHYYELVPN 9 Unmodified _HHYYELVPN_ 0 0 0 REV__L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense REV__L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 586.2799682617188 2 586.28018 1170.54581 NaN NaN NaN NaN NaN NaN NaN 72.218 1 75.598 75.098 76.098 3.3799 0 0 0 0.29868 1 17657 17657 10.824 1.4408 1 + 11979 26212 7482 7488 14913 14913 -0.03264329187868498 HHYYELVPN 9 Unmodified _HHYYELVPN_ 0 0 0 REV__L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense REV__L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.2810668945312 2 586.28018 1170.54581 0.45365 0.00026597 -1.0449 -0.00061262 -0.59129 -0.00034666 586.2794511100268 72.353 0.36397 75.58 75.441 75.805 3.2271 38 28 2 0 0 0 0.35081 1 17860 17860 10.824 6.4947 1 94846 + 11980 26212 7482 7488 14914 14914 -0.03264329187868498 HIAFKEKT 8 Unmodified _HIAFKEKT_ 0 0 0 L1MEi_dup2844|chr9:6521896-6522810:-|1.0022529948077|0.0103613537932359|6.6|150.0|25|2|sense L1MEi_dup2844|chr9:6521896-6522810:-|1.0022529948077|0.0103613537932359|6.6|150.0|25|2|sense L1MEi_dup2844|chr9:6521896-6522810:-|1.0022529948077|0.0103613537932359|6.6|150.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 487.2892150878906 2 487.276909 972.539266 NaN NaN NaN NaN NaN NaN NaN 57.189 1 60.703 60.203 61.203 3.5142 0 0 0 0.40738 1 12349 12349 0.79363 0 1 11981 13452 7483 7489 14915 14915 0.0518977765142381 HIAFYYDR 8 Unmodified _HIAFYYDR_ 0 0 0 L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|152|1|anti-sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|152|1|anti-sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|152|1|anti-sense MSMS UPN47_class_I_Rep_2 3 542.764404296875 2 542.764166 1083.51378 NaN NaN NaN NaN NaN NaN NaN 33.78 1 37.22 36.72 37.72 3.4398 0 0 0 0.40738 1 6026 6026 0.79363 0 1 11982 8577 7484 7490 14916 14916 -0.024636968710183282 HIAGPKKR 8 Unmodified _HIAGPKKR_ 0 0 0 REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|10|1|sense REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 453.7840576171875 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 34.859 1 38.123 37.623 38.623 3.2639 0 0 0 0.40746 1 6387 6387 0.69038 0 1 + 11983 31926 7485 7491 14917 14917 0.09936323328031449 HIAPPETHV 9 Unmodified _HIAPPETHV_ 0 0 0 REV__L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|119|2|anti-sense REV__L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|119|2|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7652893066406 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 28.307 1 31.864 31.364 32.364 3.5571 0 0 0 0.39428 1 3766 3766 2.0598 0.40713 1 + 11984 26545 7486 7492 14918 14918 0.014003031290030776 HICCKLKLY 9 Unmodified _HICCKLKLY_ 0 0 0 HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|8|1|sense;HERVS71-int_dup63|chr8:8142070-8144889:+|5.402362978131311|0.1720022878832018|4.97|151.0|8|1|sense HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|8|1|sense HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.8045654296875 2 560.803922 1119.59329 0.33603 0.00018845 -1.0083 -0.00056544 -0.67223 -0.00037699 560.8032893379739 54.384 0.52172 57.886 57.57 58.091 3.5014 36 22 2 0 0 0 0.40174 1 12264 12264 7.9102 0 1 87557 11985 8422 7487 7493 14919 14919 0.03827910487120789 HIDLELVWR 9 Unmodified _HIDLELVWR_ 0 0 0 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 MSMS UPN46_class_I_Rep_3 1 590.8275146484375 2 590.827298 1179.64004 NaN NaN NaN NaN NaN NaN NaN 72.728 1 72.728 72.228 73.228 0 0 0 0 0.39428 1 16825 16825 2.0598 0.40713 1 11986 4662 7488 7494 14920 14920 0.0574080963428969 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(48)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15;KCTD1|p.Y114Ifs*28|1|0.4|ENSG00000134504|chr18:26459895-26459896|-/T|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MSMS UPN47_class_I_Rep_1 2 522.7315673828125 2 522.732009 1043.44946 -0.14182 -7.4133E-05 0.20089 0.00010501 0.059066 3.0876E-05 522.7320122596745 30.425 0.58642 34.17 33.779 34.366 3.7449 62 42 2 0 0 0 0.051515 1 4927 4927 48.346 32.499 1 130900 11987 16714 7489 7495 14921 14921 182 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(51)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15;KCTD1|p.Y114Ifs*28|1|0.4|ENSG00000134504|chr18:26459895-26459896|-/T|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP UPN47_class_I_Rep_1 2 522.7969360351562 2 522.732009 1043.44946 -0.14362 -7.5076E-05 -0.050587 -2.6443E-05 -0.19421 -0.00010152 522.7319555290774 29.719 0.61909 33.477 33.173 33.792 3.7578 86 46 3 0 0 0 0.040373 1 4703 4703 50.855 29.108 1 134530 11988 16714 7489 7495 14922 14922 182 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ HIDVGGHM(1)Y HIDVGGHM(51)Y 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15;KCTD1|p.Y114Ifs*28|1|0.4|ENSG00000134504|chr18:26459895-26459896|-/T|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-SECPEP UPN47_class_I_Rep_2 3 522.7968139648438 2 522.732009 1043.44946 -0.36744 -0.00019207 0.086901 4.5426E-05 -0.28053 -0.00014664 522.73201997888 29.822 0.55055 33.314 33.061 33.612 3.4923 75 44 2 0 0 0 0.040373 1 4811 4811 50.855 29.108 1 115520 11989 16714 7489 7495 14923 14923 182 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15;KCTD1|p.Y114Ifs*28|1|0.4|ENSG00000134504|chr18:26459895-26459896|-/T|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MATCH UPN47_class_I_Rep_2 3 2 522.732009 1043.44946 -0.36725 -0.00019197 0.057928 3.0281E-05 -0.30932 -0.00016169 522.731965807658 30.536 0.87966 34.018 33.509 34.388 3.4821 -0.085386 2.2257E-05 NaN 48.346 117 71 2 NaN NaN NaN NaN 0 NaN NaN 0 126010 11990 16714 7489 7495 182 -0.0705222001945458 HIDVGGHMY 9 Oxidation (M) _HIDVGGHM(Oxidation (M))Y_ 0 0 1 nc|ENSG00000153885|Q96SI1-2|KCTD15;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15;KCTD1|p.Y114Ifs*28|1|0.4|ENSG00000134504|chr18:26459895-26459896|-/T|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1 nc|ENSG00000153885|Q96SI1-2|KCTD15 nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MATCH UPN47_class_I_Rep_3 4 2 522.732009 1043.44946 -0.2873 -0.00015018 -0.11239 -5.8747E-05 -0.39968 -0.00020893 522.7319572351422 30.81 0.87297 34.121 33.706 34.579 3.3116 0.018232 -0.0001558 NaN 48.346 108 70 2 NaN NaN NaN NaN 0 NaN NaN 0 134950 11991 16714 7489 7495 182 -0.0705222001945458 HIFAIAYY 8 Unmodified _HIFAIAYY_ 0 0 0 REV__ENSG00000157551|ENST00000398938|KCNJ15 REV__ENSG00000157551|ENST00000398938|KCNJ15 MULTI-MSMS UPN47_class_I_Rep_3 4 499.26025390625 2 499.260728 996.506903 -0.42637 -0.00021287 -0.38852 -0.00019397 -0.81489 -0.00040684 499.2606129979333 28.175 1.1319 31.509 30.963 32.095 3.3337 153 95 2 0 0 0 0.82752 1 4485 4485 0.79363 0 1 76349 + 11992 19823 7490 7496 14924 14924 0.00850990248409289 HIFCKKCI 8 Unmodified _HIFCKKCI_ 0 0 0 ENSG00000179580|ENST00000569714|RNF151 ENSG00000179580|ENST00000569714|RNF151 ENSG00000179580|ENST00000569714|RNF151 MSMS UPN46_class_I_Rep_3 1 496.2637939453125 2 496.264433 990.514313 NaN NaN NaN NaN NaN NaN NaN 18.455 1 18.455 17.955 18.955 0 0 0 0 0.40738 1 1614 1614 0.79363 0 1 11993 4864 7491 7497 14925 14925 0.018676832528512932 HIFFIHYVFVI 11 Unmodified _HIFFIHYVFVI_ 0 0 0 REV__L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|75|2|anti-sense REV__L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|75|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.9736328125 3 478.935936 1433.78598 -0.15599 -7.4711E-05 1.1719 0.00056126 1.0159 0.00048655 478.9366386684698 45.201 0.24696 48.901 48.841 49.088 3.6999 21 13 2 0 0 0 0.68024 1 9522 9522 0.50596 0.051438 1 38570 + 11994 25144 7492 7498 14926 14926 0.0864369215030365 HIFFKRFL 8 Unmodified _HIFFKRFL_ 0 0 0 REV__L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|262|2|anti-sense REV__L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|262|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 553.8255615234375 2 554.326737 1106.63892 0.44161 0.0002448 2.1366 0.0011844 2.5782 0.0014292 554.3278807595985 67.066 0.2592 70.574 70.487 70.746 3.5077 20 18 2 0 0 0 0.72333 1 15327 15327 0.79363 0 1 114830 + 11995 30548 7493 7499 14927 14927 0.08986640056036777 HIFGATEIIL 10 Unmodified _HIFGATEIIL_ 0 0 0 ENSG00000221954|ENST00000335238|OR4C12 ENSG00000221954|ENST00000335238|OR4C12 ENSG00000221954|ENST00000335238|OR4C12 MULTI-MSMS UPN47_class_I_Rep_1 2 557.3190307617188 2 557.318774 1112.623 0.37828 0.00021082 -0.056873 -3.1696E-05 0.3214 0.00017912 557.3185526269152 64.993 0.31272 68.348 68.101 68.413 3.3557 38 23 2 0 0 0 0.56033 1 15484 15484 3.5965 0.31518 1 131930 11996 5648 7494 7500 14928 14928 0.07118889028470221 HIFGRRYRA 9 Unmodified _HIFGRRYRA_ 0 0 0 REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron MSMS UPN46_class_I_Rep_3 1 588.3323364257812 2 588.330873 1174.64719 NaN NaN NaN NaN NaN NaN NaN 47.952 1 47.952 47.452 48.452 0 0 0 0 0.39428 1 9951 9951 2.0598 0 1 + 11997 17801 7495 7501 14929 14929 0.06685587025367568 HIFKSKKY 8 Unmodified _HIFKSKKY_ 0 0 0 L1M5_dup3975|chr1:247161082-247161692:+|2.422246232364197|0.0843730763506242|4.84|151.0|7|1|sense L1M5_dup3975|chr1:247161082-247161692:+|2.422246232364197|0.0843730763506242|4.84|151.0|7|1|sense L1M5_dup3975|chr1:247161082-247161692:+|2.422246232364197|0.0843730763506242|4.84|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 525.8060913085938 2 525.808377 1049.6022 NaN NaN NaN NaN NaN NaN NaN 45.241 1 45.241 44.741 45.741 0 0 0 0 0.37214 1 9181 9181 16.942 2.3606 1 11998 9159 7496 7502 14930 14930 0.07938343439468554 HIGKKPAH 8 Unmodified _HIGKKPAH_ 0 0 0 MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 444.2641906738281 2 444.264136 886.51372 -0.042883 -1.9052E-05 0.54163 0.00024063 0.49874 0.00022157 444.26425352858735 108.77 0.5297 112.3 112.16 112.69 3.5333 102 59 2 0 0 0 0.82752 1 26433 26433 5.2307 5.2307 1 9060100 11999 15773 7497 7503 14931 14931 0.0659234791964991 HIGKKPAH 8 Unmodified _HIGKKPAH_ 0 0 0 MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 444.264136 886.51372 0.1685 7.4859E-05 0.2696 0.00011977 0.4381 0.00019463 444.26415691827884 108.72 0.37483 112.36 112.24 112.62 3.6355 0.011755 -8.9319E-05 NaN 5.2307 76 35 3 NaN NaN NaN NaN 0 NaN NaN 0 10067000 12000 15773 7497 7503 0.0659234791964991 HIGKKPAH 8 Unmodified _HIGKKPAH_ 0 0 0 MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 444.264136 886.51372 -0.24403 -0.00010841 0.47829 0.00021249 0.23426 0.00010407 444.2642586075596 108.76 0.52232 112.3 112.16 112.68 3.5382 -0.04696 9.6107E-05 NaN 5.2307 91 57 2 NaN NaN NaN NaN 0 NaN NaN 0 12454000 12001 15773 7497 7503 0.0659234791964991 HIGKKPAH 8 Unmodified _HIGKKPAH_ 0 0 0 MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 444.264136 886.51372 -0.016876 -7.4972E-06 0.52243 0.0002321 0.50555 0.0002246 444.2642640747667 108.69 0.34774 112.32 112.25 112.59 3.6321 -0.02229 0.00013533 NaN 5.2307 56 38 2 NaN NaN NaN NaN 0 NaN NaN 0 6531200 12002 15773 7497 7503 0.0659234791964991 HIGKKPAH 8 Unmodified _HIGKKPAH_ 0 0 0 MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 444.264136 886.51372 0.13442 5.9719E-05 0.19222 8.5397E-05 0.32664 0.00014512 444.2641084103499 108.74 0.60341 112.41 112.23 112.83 3.6746 0.068224 -0.00015807 NaN 5.2307 84 62 2 NaN NaN NaN NaN 0 NaN NaN 0 7595100 12003 15773 7497 7503 0.0659234791964991 HIGKKPAH 8 Unmodified _HIGKKPAH_ 0 0 0 MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MER113A_dup1186|chr16:8851563-8851699:-|1.0914084479772417|0.2386123016765151|2.19|151.0|4|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 444.264136 886.51372 0.15468 6.8717E-05 0.19233 8.5446E-05 0.34701 0.00015416 444.26408503016455 108.7 0.52477 112.38 112.28 112.81 3.6751 0.033571 -0.00015797 NaN 5.2307 83 58 3 NaN NaN NaN NaN 0 NaN NaN 0 8699700 12004 15773 7497 7503 0.0659234791964991 HIGKKYCS 8 Unmodified _HIGKKYCS_ 0 0 0 L1MC2_dup2651|chr7:123732360-123734510:+|1.2790757909964576|0.1377689654904555|3.21|151.0|17|1|sense L1MC2_dup2651|chr7:123732360-123734510:+|1.2790757909964576|0.1377689654904555|3.21|151.0|17|1|sense L1MC2_dup2651|chr7:123732360-123734510:+|1.2790757909964576|0.1377689654904555|3.21|151.0|17|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 467.6237487792969 2 468.242012 934.469472 0.071488 3.3473E-05 -3.345 -0.0015663 -3.2735 -0.0015328 468.240738574175 103.14 0.12328 106.76 106.7 106.82 3.6164 18 15 2 0 0 0 0.72333 1 24856 24856 2.5775 0 1 63285 12005 11240 7498 7504 14932 14932 -0.000384242888458175 HIGSVVSLVL 10 Unmodified _HIGSVVSLVL_ 0 0 0 REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|5|1|sense REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.3133544921875 2 512.313492 1022.61243 0.18281 9.3658E-05 -0.29248 -0.00014984 -0.10966 -5.6181E-05 512.3134060671982 53.746 0.93441 57.273 56.861 57.795 3.5278 76 55 2 0 0 0 0.52083 1 11968 11968 9.3831 1.2276 1 161010 + 12006 31314 7499 7505 14933 14933 0.10202906374036047 HIGSVVSLVL 10 Unmodified _HIGSVVSLVL_ 0 0 0 REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|5|1|sense REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.3139038085938 2 512.313492 1022.61243 0.19122 9.7965E-05 -0.57575 -0.00029496 -0.38453 -0.000197 512.3133528390848 53.999 1.0754 57.318 56.934 58.01 3.3187 84 60 2 0 0 0 0.54466 1 12339 12339 6.2058 0 1 153210 + 12007 31314 7499 7505 14934 14934 0.10202906374036047 HIGVMVEFSIA 11 Unmodified _HIGVMVEFSIA_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7;ENST00000568930.1_1_16:50347751-50349413:+|nuORF ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS UPN47_class_I_Rep_3 4 601.8155517578125 2 601.815541 1201.61653 0.39185 0.00023582 -0.451 -0.00027142 -0.059148 -3.5596E-05 601.8154835031261 56.719 0.30482 59.891 59.699 60.004 3.1721 25 17 2 0 0 0 0.4608 1 13027 13027 8.7454 0.58988 1 108870 12008 2353 7500 7506 14935 14935 0.023786278054558352 HIGYVNSY 8 Unmodified _HIGYVNSY_ 0 0 0 ENST00000220913.9_1_8:141525461-141525764:+|nuORF ENST00000220913.9_1_8:141525461-141525764:+|nuORF ENST00000220913.9_1_8:141525461-141525764:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 476.729736328125 2 476.729792 951.445031 0.25774 0.00012287 0.59992 0.000286 0.85766 0.00040887 476.7299275873244 87.531 0.48421 87.531 87.208 87.693 0 106 42 3 0 0 0 0.82752 1 20994 20994 4.3292 0 1 998780 12009 5869 7501 7507 14936 14936 -0.032633611707069576 HIHLAVPVP 9 Unmodified _HIHLAVPVP_ 0 0 0 ENST00000484692.1_1_1:33838044-33896605:-|nuORF ENST00000484692.1_1_1:33838044-33896605:-|nuORF ENST00000484692.1_1_1:33838044-33896605:-|nuORF MSMS UPN48_class_I_Rep_2 6 491.7958679199219 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.325 1 71.833 71.333 72.333 3.5083 0 0 0 0.39326 1 15751 15751 2.3027 0 1 12010 7023 7502 7508 14937 14937 0.08446074267988024 HIHSRELIREH 11 Unmodified _HIHSRELIREH_ 0 0 0 REV__ENST00000343979.5_1_19:12298828-12299077:+|nuORF REV__ENST00000343979.5_1_19:12298828-12299077:+|nuORF MSMS UPN48_class_I_Rep_2 6 476.2732238769531 3 476.260253 1425.75893 NaN NaN NaN NaN NaN NaN NaN 31.399 1 35.04 34.54 35.54 3.641 0 0 0 0.38417 1 4719 4719 1.4551 0.67859 1 + 12011 21837 7503 7509 14938 14938 0.06307976591824627 HIIATKTPSS 10 Unmodified _HIIATKTPSS_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MSMS UPN47_class_I_Rep_3 4 527.7979736328125 2 527.798206 1053.58186 NaN NaN NaN NaN NaN NaN NaN 34.597 1 37.861 37.361 38.361 3.2639 0 0 0 0.53105 1 6308 6308 2.4985 0 1 12012 1601 7504 7510 14939 14939 0.05721127988999797 HIIKKIRQKI 10 Unmodified _HIIKKIRQKI_ 0 0 0 REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|128|3|sense REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|128|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 638.9318237304688 2 638.932431 1275.85031 0.49886 0.00031874 -0.78352 -0.00050062 -0.28467 -0.00018188 638.931802506641 108.16 0.36975 111.83 111.72 112.09 3.6746 78 41 3 0 0 0 0.56478 2 25616 25616;25664 0.45834 0 1 3712100 + 12013 30442 7505 7511 14940;14941 14940 0.22341892027111498 HIIKKIRQKI 10 Unmodified _HIIKKIRQKI_ 0 0 0 REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|128|3|sense REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|128|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 638.93212890625 2 638.932431 1275.85031 0.63015 0.00040262 -0.80509 -0.0005144 -0.17494 -0.00011177 638.931930266369 108.16 0.38388 111.84 111.76 112.15 3.6813 62 37 2 0 0 0 0.56478 1 25557 25557 0.45834 0 1 3864500 + 12014 30442 7505 7511 14942 14942 0.22341892027111498 HIIKPKCIIF 10 Unmodified _HIIKPKCIIF_ 0 0 0 L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|20|2|sense L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|20|2|sense L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 606.871826171875 2 606.370287 1210.72602 0.50977 0.00030911 -0.80827 -0.00049011 -0.2985 -0.000181 606.8714462602649 108.54 0.089844 112.08 112.02 112.11 3.5382 20 10 2 0 0 0 0.56309 1 26580 26580 1.6526 0.17072 1 7415600 12015 9049 7506 7512 14943 14943 0.12908678215421787 HIIKPKCIIF 10 Unmodified _HIIKPKCIIF_ 0 0 0 L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|20|2|sense L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|20|2|sense L1M4c_dup2403|chr10:73369021-73369919:+|1.4731955048052905|0.0971841463918067|3.92|151.0|20|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.87109375 2 606.370287 1210.72602 0.48817 0.00029601 -1.3339 -0.00080883 -0.84571 -0.00051282 606.369759794171 108.48 0.082184 112.16 112.12 112.2 3.6746 14 10 2 0 0 0 0.56309 1 25740 25740 1.6526 0.17072 1 7553600 12016 9049 7506 7512 14944 14944 0.12908678215421787 HIKALLKEYP 10 Unmodified _HIKALLKEYP_ 0 0 0 REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|29|3|sense REV__L1M4_dup17545|chr16:58569425-58570355:+|1.29615151617194|0.0291027762764244|5.48|150.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 606.3614501953125 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 35.618 1 35.618 35.118 36.118 0 0 0 0 0.53105 1 6507 6507 1.6526 0 1 + 12017 24398 7507 7513 14945 14945 0.11046839845243994 HIKALLKIIL 10 Unmodified _HIKALLKIIL_ 0 0 0 L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 581.4056396484375 2 581.407727 1160.8009 NaN NaN NaN NaN NaN NaN NaN 109.22 1 109.22 108.72 109.72 0 0 0 0 0.53105 1 26790 26790 3.5965 1.9439 1 12018 12568 7508 7514 14946 14946 0.2269318401831697 HIKALLKIIL 10 Unmodified _HIKALLKIIL_ 0 0 0 L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 581.4058227539062 2 581.407727 1160.8009 NaN NaN NaN NaN NaN NaN NaN 108.01 1 111.69 111.19 112.19 3.6813 0 0 0 0.53105 1 25517 25517 0.45834 0 1 12019 12568 7508 7514 14947 14947 0.2269318401831697 HIKALLKIIL 10 Unmodified _HIKALLKIIL_ 0 0 0 L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 581.406005859375 2 581.407727 1160.8009 NaN NaN NaN NaN NaN NaN NaN 108.54 1 112.21 111.71 112.71 3.6751 0 0 0 0.53105 1 25695 25695 1.6526 1.0511 1 12020 12568 7508 7514 14948 14948 0.2269318401831697 HIKALQTVT 9 Unmodified _HIKALQTVT_ 0 0 0 ENSG00000256188|ENST00000539585|TAS2R30;ENSG00000255837|ENST00000538986|TAS2R20;ENSG00000226761|ENST00000533467|TAS2R46;ENSG00000212124|ENST00000390673|TAS2R19 ENSG00000256188|ENST00000539585|TAS2R30 ENSG00000256188|ENST00000539585|TAS2R30 MSMS UPN47_class_I_Rep_1 2 505.80316162109375 2 505.803291 1009.59203 NaN NaN NaN NaN NaN NaN NaN 38.315 1 41.98 41.48 42.48 3.6652 0 0 0 0.38478 1 7369 7369 4.3292 0.38484 1 12021 5765 7509 7515 14949 14949 0.08761735714222141 HIKIPFYFL 9 Unmodified _HIKIPFYFL_ 0 0 0 L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|80|3|anti-sense L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|80|3|anti-sense L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 589.3423461914062 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 87.477 1 90.924 90.424 91.424 3.4471 0 0 0 0.4007 1 21745 21745 0.52476 0 1 12022 13416 7510 7516 14950 14950 0.08828373650408139 HIKLNTLK 8 Unmodified _HIKLNTLK_ 0 0 0 REV__L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|4|1|sense REV__L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 484.2514343261719 2 483.808377 965.6022 NaN NaN NaN NaN NaN NaN NaN 29.732 1 33.282 32.782 33.782 3.5499 0 0 0 0.40753 1 4175 4175 0.6015 0 1 + 12023 26335 7511 7517 14951 14951 0.11802343439478591 HIKMRTNR 8 Unmodified _HIKMRTNR_ 0 0 0 REV__L1M8_dup639|chr5:179883159-179884013:-|1.5732190041467229|0.2263046684928081|2.8|151.0|4|1|sense REV__L1M8_dup639|chr5:179883159-179884013:-|1.5732190041467229|0.2263046684928081|2.8|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 528.2991943359375 2 528.298185 1054.58182 NaN NaN NaN NaN NaN NaN NaN 34.474 1 37.899 37.399 38.399 3.4253 0 0 0 0.40604 1 6240 6240 2.5775 0.51773 1 + 12024 24746 7512 7518 14952 14952 0.056708495080101784 HIKSDTKWN 9 Unmodified _HIKSDTKWN_ 0 0 0 REV__L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|13|1|sense REV__L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 564.7918090820312 2 564.793455 1127.57236 NaN NaN NaN NaN NaN NaN NaN 34.8 1 38.064 37.564 38.564 3.2639 0 0 0 0.38639 1 6370 6370 3.9444 0 1 + 12025 27613 7513 7519 14953 14953 0.013673597034767226 HILDTSLL 8 Unmodified _HILDTSLL_ 0 0 0 L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|88|3|anti-sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|88|3|anti-sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|88|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.2633972167969 2 456.263468 910.512382 -0.016371 -7.4696E-06 0.024642 1.1243E-05 0.0082705 3.7735E-06 456.26338821195407 56.868 0.97726 60.169 59.759 60.736 3.3009 141 78 3 0 0 0 0.82752 1 13008 13008 9.3474 0 1 714300 12026 10898 7514 7520 14954 14954 0.05354669040252702 HILFQKRWK 9 Unmodified _HILFQKRWK_ 0 0 0 REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|64|3|sense REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|64|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 628.8760986328125 2 628.374749 1254.73495 0.48597 0.00030537 -0.98053 -0.00061614 -0.49456 -0.00031077 628.8758430939987 32.239 0.036423 32.239 32.229 32.265 0 6 2 3 0 0 0 0.50088 1 5495 5495 0.52476 0 1 306460 + 12027 27232 7515 7521 14955 14955 0.11776787896110363 HILFQKRWK 9 Unmodified _HILFQKRWK_ 0 0 0 REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|64|3|sense REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|64|3|sense MSMS UPN46_class_I_Rep_3 1 628.3743896484375 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 31.969 1 31.969 31.469 32.469 0 0 0 0 0.4007 1 5410 5410 0.52476 0 1 + 12028 27232 7515 7521 14956 14956 0.11776787896110363 HILHRYPR 8 Unmodified _HILHRYPR_ 0 0 0 L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|50|1|sense L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|50|1|sense L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|50|1|sense MSMS UPN48_class_I_Rep_2 6 546.2424926757812 2 546.314692 1090.61483 NaN NaN NaN NaN NaN NaN NaN 42.878 1 46.636 46.136 47.136 3.7579 0 0 0 0.40746 1 7991 7991 0.69038 0 1 12029 14888 7516 7522 14957 14957 0.0731479962234971 HILLIYIRYNY 11 Unmodified _HILLIYIRYNY_ 0 0 0 REV__L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|65|3|sense REV__L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|65|3|sense MSMS UPN47_class_I_Rep_2 3 494.282470703125 3 494.281883 1479.82382 NaN NaN NaN NaN NaN NaN NaN 23.156 1 26.601 26.101 27.101 3.4447 0 0 0 0.38417 1 2871 2871 1.3296 0.82369 1 + 12030 28921 7517 7523 14958 14958 0.10310158345146192 HILMHNLL 8 Unmodified _HILMHNLL_ 0 0 0 REV__ENSG00000101126|ENST00000621696|ADNP REV__ENSG00000101126|ENST00000621696|ADNP MSMS UPN47_class_I_Rep_1 2 495.780517578125 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 83.828 1 87.393 86.893 87.893 3.5655 0 0 0 0.39624 1 20972 20972 9.3474 1.4373 1 + 12031 18149 7518 7524 14959 14959 0.0528642801625665 HILNLGKY 8 Unmodified _HILNLGKY_ 0 0 0 REV__MSTD_dup356|chr1:147261208-147261546:-|2.1745359534838924|0.3564337903959437|2.61|151.0|25|3|anti-sense REV__MSTD_dup356|chr1:147261208-147261546:-|2.1745359534838924|0.3564337903959437|2.61|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.277587890625 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 87.875 1 91.603 91.103 92.103 3.7279 0 0 0 0.40404 1 20911 20911 5.2307 0.47466 1 + 12032 31917 7519 7525 14960 14960 0.0643408151404401 HILPGTTSRL 10 Unmodified _HILPGTTSRL_ 0 0 0 ENST00000491061.1_1_7:151815642-151815978:+|nuORF ENST00000491061.1_1_7:151815642-151815978:+|nuORF ENST00000491061.1_1_7:151815642-151815978:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.8173217773438 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 34.713 1 38.228 37.728 38.728 3.5144 0 0 0 0.53105 1 5588 5588 1.3295 0.5359 1 12033 7070 7520 7526 14961 14961 0.0813252311722863 HILSAPQLF 9 Unmodified _HILSAPQLF_ 0 0 0 HERVH-int_dup53|chr1:37910895-37911925:+|1.4890657899047297|0.0320033847564581|5.54|151.0|27|3|sense HERVH-int_dup53|chr1:37910895-37911925:+|1.4890657899047297|0.0320033847564581|5.54|151.0|27|3|sense HERVH-int_dup53|chr1:37910895-37911925:+|1.4890657899047297|0.0320033847564581|5.54|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 513.2904052734375 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 80.39 1 80.39 79.89 80.89 0 0 0 0 0.39428 1 18935 18935 2.0598 1.2661 1 12034 8161 7521 7527 14962 14962 0.059263506854904335 HILWHPTW 8 Unmodified _HILWHPTW_ 0 0 0 ENST00000503343.5_1_4:79838964-79847734:-|nuORF ENST00000503343.5_1_4:79838964-79847734:-|nuORF ENST00000503343.5_1_4:79838964-79847734:-|nuORF MSMS UPN47_class_I_Rep_3 4 545.2351684570312 2 545.285069 1088.55558 NaN NaN NaN NaN NaN NaN NaN 31.138 1 34.437 33.937 34.937 3.2991 0 0 0 0.40738 1 5267 5267 0.79363 0 1 12035 7137 7522 7528 14963 14963 0.014849036081614031 HIMRLLLGF 9 Unmodified _HIMRLLLGF_ 0 0 0 REV__L1MA3_dup1783|chr3:142080265-142081949:+|1.7376865483906656|0.0111108060971953|7.29|151.0|87|2|anti-sense REV__L1MA3_dup1783|chr3:142080265-142081949:+|1.7376865483906656|0.0111108060971953|7.29|151.0|87|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 550.2181396484375 2 550.325879 1098.63721 0.58825 0.00032373 1.774 0.00097626 2.3622 0.0013 550.3267429510925 57.895 0.082386 61.409 61.357 61.44 3.5142 6 4 2 0 0 0 0.12444 1 12555 12555 2.0598 0 1 67929 + 12036 24985 7523 7529 14964 14964 0.09183262975784601 HINVVGGHIY 10 Unmodified _HINVVGGHIY_ 0 0 0 REV__nc|ENSG00000128607|Q6PID8-2|KLHDC10 REV__nc|ENSG00000128607|Q6PID8-2|KLHDC10 MSMS UPN47_class_I_Rep_2 3 554.7970581054688 2 554.79854 1107.58253 NaN NaN NaN NaN NaN NaN NaN 45.772 1 49.125 48.625 49.625 3.3534 0 0 0 0.53105 1 9677 9677 6.2058 0.97511 1 + 12037 18903 7524 7530 14965 14965 0.033039674287238086 HIPCPYQVT 9 Unmodified _HIPCPYQVT_ 0 0 0 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 MSMS UPN48_class_I_Rep_3 7 529.26171875 2 529.260402 1056.50625 NaN NaN NaN NaN NaN NaN NaN 30.423 1 34.138 33.638 34.638 3.7146 0 0 0 0.39326 1 4386 4386 2.3027 0 1 12038 1683 7525 7531 14966 14966 -0.019741724629511737 HIPKALQKALP 11 Unmodified _HIPKALQKALP_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MSMS UPN48_class_I_Rep_2 6 608.375244140625 2 608.38224 1214.74993 NaN NaN NaN NaN NaN NaN NaN 107.77 1 111.45 110.95 111.95 3.6783 0 0 0 0.20858 1 25495 25495 17.113 8.3675 1 12039 4202 7526 7532 14967 14967 0.15114234973452767 HIPKALQKALP 11 Unmodified _HIPKALQKALP_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MSMS UPN48_class_I_Rep_2 6 608.4061279296875 2 608.38224 1214.74993 NaN NaN NaN NaN NaN NaN NaN 107.82 1 111.5 111 112 3.6783 0 0 0 0.20858 1 25514 25514 17.113 10.483 1 12040 4202 7526 7532 14968 14968 0.15114234973452767 HIPPVPHIIT 10 Unmodified _HIPPVPHIIT_ 0 0 0 L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.3346557617188 2 562.334759 1122.65496 0.635 0.00035708 0.15054 8.4652E-05 0.78554 0.00044173 562.3342866284974 110.82 0.16795 114.35 114.27 114.44 3.5271 45 19 3 0 0 0 0.53654 1 26977 26977 7.2892 0.56607 1 564610 12041 11155 7527 7533 14969 14969 0.09854301502286944 HIPPVPHIIT 10 Unmodified _HIPPVPHIIT_ 0 0 0 L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 562.334759 1122.65496 0.635 0.00035708 0.15054 8.4652E-05 0.78554 0.00044173 562.3342866284974 110.82 0.16795 114.35 114.27 114.44 3.5271 0.019841 0.00092126 NaN 7.2892 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 564610 12042 11155 7527 7533 0.09854301502286944 HIPPVPHIIT 10 Unmodified _HIPPVPHIIT_ 0 0 0 L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 562.334759 1122.65496 0.49268 0.00027705 -0.34783 -0.0001956 0.14485 8.1453E-05 562.8360670444862 110.66 0.090569 114.33 114.27 114.36 3.669 -0.0011551 0.00036076 NaN 7.2892 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 33532 12043 11155 7527 7533 0.09854301502286944 HIQIVRGQR 9 Unmodified _HIQIVRGQR_ 0 0 0 REV__ENST00000393415.7_1_12:69229612-69230524:+|nuORF REV__ENST00000393415.7_1_12:69229612-69230524:+|nuORF MSMS UPN46_class_I_Rep_3 1 553.8305053710938 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 84.356 1 84.356 83.856 84.856 0 0 0 0 0.39518 1 20066 20066 1.8442 0.19162 1 + 12044 22098 7528 7534 14970 14970 0.09826167305527633 HIQKILKRKL 10 Unmodified _HIQKILKRKL_ 0 0 0 REV__L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense REV__L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 638.9328002929688 2 638.932431 1275.85031 NaN NaN NaN NaN NaN NaN NaN 107.83 1 111.46 110.96 111.96 3.6313 0 0 0 0.53105 1 26017 26017 1.4819 0.28856 1 + 12045 26004 7529 7535 14971 14971 0.22341892027134236 HIQVLSIFAS 10 Unmodified _HIQVLSIFAS_ 0 0 0 L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|88|1|anti-sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|88|1|anti-sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|88|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.816162109375 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 47.546 1 47.546 47.046 48.046 0 0 0 0 0.53105 1 9841 9841 6.7232 0.51738 1 12046 14076 7530 7536 14972 14972 0.0659800488572273 HIRFWFLA 8 Unmodified _HIRFWFLA_ 0 0 0 REV__L1PB4_dup3326|chr7:156711332-156713013:+|1.108610623881304|0.0275339275364407|5.33|151.0|115|3|anti-sense REV__L1PB4_dup3326|chr7:156711332-156713013:+|1.108610623881304|0.0275339275364407|5.33|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_3 7 545.3031616210938 2 545.303262 1088.59197 NaN NaN NaN NaN NaN NaN NaN 23.715 1 27.484 26.984 27.984 3.769 0 0 0 0.40738 1 2644 2644 0.79363 0 1 + 12047 30586 7531 7537 14973 14973 0.051217805049191156 HIRHHLILQS 10 Unmodified _HIRHHLILQS_ 0 0 0 REV__nc|ENSG00000197050|Q8TAQ5-2|ZNF420 REV__nc|ENSG00000197050|Q8TAQ5-2|ZNF420 MSMS UPN46_class_I_Rep_3 1 627.3671264648438 2 627.364913 1252.71527 NaN NaN NaN NaN NaN NaN NaN 64.679 1 64.679 64.179 65.179 0 0 0 0 0.53105 1 14573 14573 1.3295 0.13619 1 + 12048 21065 7532 7538 14974 14974 0.0990241188537766 HIRLYHML 8 Unmodified _HIRLYHML_ 0 0 0 L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|145|2|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|145|2|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|145|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 541.7998657226562 2 541.800029 1081.5855 -0.129 -6.9892E-05 1.5258 0.00082666 1.3968 0.00075677 541.8008391081543 34.981 0.37666 38.244 38.014 38.391 3.2639 36 28 2 0 0 0 0.82752 1 6434 6434 5.2307 0 1 63085 12049 10304 7533 7539 14975 14975 0.04797519281873974 HIRMRKKQA 9 Unmodified _HIRMRKKQA_ 0 0 0 HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|23|3|sense HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|23|3|sense HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|23|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.348209 1166.68186 0.19991 0.00011682 -0.18042 -0.00010543 0.019493 1.1391E-05 584.3479576835342 26.952 0.33661 26.952 26.94 27.277 0 54 27 3 0 0 0 0.50088 1 3956 3956 0.52476 0 1 622340 12050 7945 7534 7540 14976 14976 0.1051908684182763 HISQNLYEIS 10 Unmodified _HISQNLYEIS_ 0 0 0 REV__ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|133|2|anti-sense REV__ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|133|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 602.30224609375 2 602.303852 1202.59315 0.37661 0.00022684 0.15548 9.3646E-05 0.53209 0.00032048 602.3038288547916 65.52 1.0189 68.876 68.476 69.495 3.3557 148 59 4 0 0 0 0.56155 1 15802 15802 2.7352 1.2533 1 847700 + 12051 23291 7535 7541 14977 14977 -4.094707514923357E-05 HITPDDYL 8 Unmodified _HITPDDYL_ 0 0 0 REV__ENSG00000176542|ENST00000316407|USF3 REV__ENSG00000176542|ENST00000316407|USF3 MSMS UPN48_class_I_Rep_1 5 487.2347106933594 2 487.234907 972.455261 NaN NaN NaN NaN NaN NaN NaN 51.462 1 54.985 54.485 55.485 3.5227 0 0 0 0.40625 1 10616 10616 2.3027 0 1 + 12052 20591 7536 7542 14978 14978 -0.03206798236146824 HITTSRVK 8 Unmodified _HITTSRVK_ 0 0 0 L1MC4_dup10331|chr7:39992699-39993516:-|1.6251522234710098|0.0888645564953324|4.19|151.0|27|3|sense L1MC4_dup10331|chr7:39992699-39993516:-|1.6251522234710098|0.0888645564953324|4.19|151.0|27|3|sense L1MC4_dup10331|chr7:39992699-39993516:-|1.6251522234710098|0.0888645564953324|4.19|151.0|27|3|sense MSMS UPN47_class_I_Rep_2 3 471.27996826171875 2 471.279983 940.545414 NaN NaN NaN NaN NaN NaN NaN 83.531 1 86.942 86.442 87.442 3.4116 0 0 0 0.40604 1 20824 20824 2.5775 0 1 12053 11393 7537 7543 14979 14979 0.07276295882957129 HITTSRVK 8 Unmodified _HITTSRVK_ 0 0 0 L1MC4_dup10331|chr7:39992699-39993516:-|1.6251522234710098|0.0888645564953324|4.19|151.0|27|3|sense L1MC4_dup10331|chr7:39992699-39993516:-|1.6251522234710098|0.0888645564953324|4.19|151.0|27|3|sense L1MC4_dup10331|chr7:39992699-39993516:-|1.6251522234710098|0.0888645564953324|4.19|151.0|27|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.2799377441406 2 471.279983 940.545414 0.20692 9.7518E-05 -0.098497 -4.6419E-05 0.10842 5.1098E-05 471.2798424119405 83.408 0.82825 87.089 86.718 87.546 3.6814 127 94 2 0 0 0 0.82752 1 19837 19837 2.5775 0.27475 1 219320 12054 11393 7537 7543 14980 14980 0.07276295882957129 HIVKQHKT 8 Unmodified _HIVKQHKT_ 0 0 0 REV__L1MA4A_dup4070|chr10:21699174-21701599:-|4.029202637426509|0.074540480461458|5.76|151.0|40|2|sense REV__L1MA4A_dup4070|chr10:21699174-21701599:-|4.029202637426509|0.074540480461458|5.76|151.0|40|2|sense MSMS UPN48_class_I_Rep_1 5 495.79638671875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.587 1 79.086 78.586 79.586 3.4996 0 0 0 0.40746 1 17916 17916 0.69038 0 1 + 12055 25298 7538 7544 14981 14981 0.08184288636891779 HIVSIEVQR 9 Unmodified _HIVSIEVQR_ 0 0 0 ENSG00000183011|ENST00000575771|NAA38;nc|ENSG00000183011|Q9BRA0-2|NAA38 ENSG00000183011|ENST00000575771|NAA38 ENSG00000183011|ENST00000575771|NAA38 MULTI-MSMS UPN48_class_I_Rep_3 7 540.8110961914062 2 540.811648 1079.60874 0.44348 0.00023984 -0.80163 -0.00043353 -0.35815 -0.00019369 540.8111533434435 34.665 0.67224 38.337 38.001 38.674 3.6721 91 78 2 0 0 0 0.31407 1 5538 5538 13.042 0 1 134400 12056 4979 7539 7545 14982 14982 0.07212236600184951 HIVSPNLVEAF 11 Unmodified _HIVSPNLVEAF_ 0 0 0 REV__Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|45|2|anti-sense REV__Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 613.3323364257812 2 613.332413 1224.65027 0.51285 0.00031455 -0.18465 -0.00011325 0.3282 0.00020129 613.33224467626 66.195 0.83356 69.681 69.373 70.206 3.4866 144 61 3 0 0 0 0.40526 1 15227 15227 10.151 3.0488 1 771430 + 12057 32393 7540 7546 14983 14983 0.04693372568840459 HIVSVSKH 8 Unmodified _HIVSVSKH_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|95|2|sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|95|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 453.7845764160156 2 453.761426 905.5083 -1.0864 -0.00049296 0.055285 2.5086E-05 -1.0311 -0.00046788 453.7611690977326 12.955 0.091313 16.329 16.291 16.382 3.3734 13 10 2 0 0 0 0.72333 1 190 190 2.8892 0 1 12090 + 12058 30145 7541 7547 14984 14984 0.0517662433719579 HIVTELDE 8 Unmodified _HIVTELDE_ 0 0 0 REV__ENST00000578270.5_1_18:19244077-19283696:-|nuORF REV__ENST00000578270.5_1_18:19244077-19283696:-|nuORF MSMS UPN48_class_I_Rep_1 5 478.2403869628906 2 478.24019 954.465826 NaN NaN NaN NaN NaN NaN NaN 36.457 1 39.964 39.464 40.464 3.507 0 0 0 0.40746 1 6086 6086 0.69038 0 1 + 12059 19839 7542 7548 14985 14985 -0.013228155816932485 HIVVARKK 8 Unmodified _HIVVARKK_ 0 0 0 REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF REV__ENST00000376769.6_1_6:30036436-30037012:+|nuORF MSMS UPN46_class_I_Rep_3 1 475.9517822265625 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 106.44 1 106.44 105.94 106.94 0 0 0 0 0.40746 1 25956 25956 0.69038 0 1 + 12060 22020 7543 7549 14986 14986 0.1416946939623358 HIVVQSSPP 9 Unmodified _HIVVQSSPP_ 0 0 0 L1MB3_dup431|chr1:51384638-51386068:+|4.2293825285929|0.0424367274529568|6.64|151.0|70|2|anti-sense L1MB3_dup431|chr1:51384638-51386068:+|4.2293825285929|0.0424367274529568|6.64|151.0|70|2|anti-sense L1MB3_dup431|chr1:51384638-51386068:+|4.2293825285929|0.0424367274529568|6.64|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_1 2 482.23431396484375 2 482.266542 962.51853 NaN NaN NaN NaN NaN NaN NaN 49.397 1 53.056 52.556 53.556 3.6592 0 0 0 0.38916 1 10741 10741 3.2813 0.39209 1 12061 10430 7544 7550 14987 14987 0.03577187271764615 HIWIRKTAF 9 Unmodified _HIWIRKTAF_ 0 0 0 REV__nc|ENSG00000233013|P0CG42|FAM157B REV__nc|ENSG00000233013|P0CG42|FAM157B MSMS UPN48_class_I_Rep_3 7 586.3427734375 2 586.340375 1170.6662 NaN NaN NaN NaN NaN NaN NaN 112.12 1 115.79 115.29 116.29 3.6614 0 0 0 0.40038 1 26630 26630 0.6015 0.076735 1 + 12062 32113 7545 7551 14988 14988 0.08769123596403006 HIYILALA 8 Unmodified _HIYILALA_ 0 0 0 REV__L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|100|3|sense REV__L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|100|3|sense MSMS UPN47_class_I_Rep_1 2 457.2642822265625 2 457.278921 912.543289 NaN NaN NaN NaN NaN NaN NaN 85.821 1 89.436 88.936 89.936 3.6153 0 0 0 0.40581 1 21432 21432 2.8892 0 1 + 12063 24408 7546 7552 14989 14989 0.08351867145131564 HIYQRNRNL 9 Unmodified _HIYQRNRNL_ 0 0 0 Tigger1_dup10327|chr15:43096462-43098505:-|1.2269243776119363|0.0185320720958047|6.05|151.0|131|3|anti-sense Tigger1_dup10327|chr15:43096462-43098505:-|1.2269243776119363|0.0185320720958047|6.05|151.0|131|3|anti-sense Tigger1_dup10327|chr15:43096462-43098505:-|1.2269243776119363|0.0185320720958047|6.05|151.0|131|3|anti-sense MSMS UPN46_class_I_Rep_3 1 405.222412109375 3 405.223139 1212.64759 NaN NaN NaN NaN NaN NaN NaN 54.933 1 54.933 54.433 55.433 0 0 0 0 0.38478 1 11921 11921 2.4985 0.57098 1 12064 32976 7547 7553 14990 14990 0.049769619545713795 HIYTNLPNY 9 Unmodified _HIYTNLPNY_ 0 0 0 REV__L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|24|2|sense REV__L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 567.7831420898438 2 567.782556 1133.55056 NaN NaN NaN NaN NaN NaN NaN 54.158 1 57.739 57.239 58.239 3.5817 0 0 0 0.39598 1 11420 11420 1.6526 0 1 + 12065 28734 7548 7554 14991 14991 -0.010874450451183293 HKAHLTRR 8 Unmodified _HKAHLTRR_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS UPN48_class_I_Rep_1 5 509.8041687011719 2 509.804491 1017.59443 0.25431 0.00012965 -1.3794 -0.0007032 -1.125 -0.00057355 509.8035934436737 78.638 0.21603 82.173 82.005 82.221 3.5352 39 30 2 0 0 0 0.82752 1 18738 18738 0.69038 0 1 74190 12066 4228 7549 7555 14992 14992 0.08633628962536477 HKAHLTRR 8 Unmodified _HKAHLTRR_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MSMS UPN48_class_I_Rep_2 6 509.803955078125 2 509.804491 1017.59443 NaN NaN NaN NaN NaN NaN NaN 90.064 1 93.811 93.311 94.311 3.7471 0 0 0 0.40746 1 21469 21469 0.69038 0 1 12067 4228 7549 7555 14993 14993 0.08633628962536477 HKAIFLFL 8 Unmodified _HKAIFLFL_ 0 0 0 REV__L1ME1_dup29409|chr20:520784-521755:+|1.252688891571788|0.0139395513001731|6.49|151.0|31|1|anti-sense REV__L1ME1_dup29409|chr20:520784-521755:+|1.252688891571788|0.0139395513001731|6.49|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.80340576171875 2 494.802563 987.590573 NaN NaN NaN NaN NaN NaN NaN 100.83 1 104.65 104.15 105.15 3.8153 0 0 0 0.40604 1 23859 23859 2.5775 0.73324 1 + 12068 27742 7550 7556 14994 14994 0.0962814641610521 HKAIPLYG 8 Unmodified _HKAIPLYG_ 0 0 0 ENSG00000137275.15,RIPK1,chr6,+,I9.1,3085409,3087603|55|8.92|1|intron;ENSG00000137275.15,RIPK1,chr6,+,I10.1,3089658,3090657|44|8.9|1|intron ENSG00000137275.15,RIPK1,chr6,+,I9.1,3085409,3087603|55|8.92|1|intron ENSG00000137275.15,RIPK1,chr6,+,I9.1,3085409,3087603|55|8.92|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 449.76080322265625 2 449.760895 897.507237 0.18436 8.2917E-05 -1.1159 -0.00050191 -0.93159 -0.00041899 449.76040555410447 109.75 0.31431 109.75 109.54 109.86 0 37 27 2 0 0 0 0.82752 1 26993 26993 5.7604 0.52976 1 1144400 12069 3019 7551 7557 14995 14995 0.05438409968269298 HKAIPRRTP 9 Unmodified _HKAIPRRTP_ 0 0 0 MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|30|1|anti-sense MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|30|1|anti-sense MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_3 4 538.3283081054688 2 538.327799 1074.64105 NaN NaN NaN NaN NaN NaN NaN 107.38 1 110.92 110.42 111.42 3.5382 0 0 0 0.3377 1 26221 26221 8.7454 0.15213 1 12070 15875 7552 7558 14996 14996 0.1067106879381754 HKAKKKVG 8 Unmodified _HKAKKKVG_ 0 0 0 REV__L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|33|2|sense REV__L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|33|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 448.2960510253906 2 448.295436 894.57632 0.18055 8.0942E-05 0.38639 0.00017322 0.56694 0.00025416 448.29574129708465 103.93 0.4403 103.93 103.82 104.26 0 67 40 2 0 0 0 0.82752 1 25391 25391 0.69038 0.69038 1 637310 + 12071 28616 7553 7559 14997 14997 0.1248149398784335 HKALVSPLAP 10 Unmodified _HKALVSPLAP_ 0 0 0 REV__nc|ENSG00000164542|Q8NCT3|MATCAP2 REV__nc|ENSG00000164542|Q8NCT3|MATCAP2 MULTI-MSMS UPN47_class_I_Rep_1 2 516.8111572265625 2 516.813659 1031.61277 0.39112 0.00020213 -2.2809 -0.0011788 -1.8898 -0.00097668 516.8120309099415 107.51 0.044991 111.18 111.17 111.22 3.6724 8 5 2 0 0 0 0.52562 1 26346 26346 8.7454 0.58988 1 1445800 + 12072 32040 7554 7560 14998 14998 0.09822326093876654 HKAPGRHT 8 Unmodified _HKAPGRHT_ 0 0 0 REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423 REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS UPN48_class_I_Rep_1 5 452.2769775390625 2 452.249018 902.483482 NaN NaN NaN NaN NaN NaN NaN 99.173 1 102.78 102.28 103.28 3.6065 0 0 0 0.40738 1 23943 23943 0.79363 0 1 + 12073 18207 7555 7561 14999 14999 0.028339892544522627 HKAPLGFLP 9 Unmodified _HKAPLGFLP_ 0 0 0 ENST00000572240.5_1_16:3080380-3081406:-|nuORF ENST00000572240.5_1_16:3080380-3081406:-|nuORF ENST00000572240.5_1_16:3080380-3081406:-|nuORF MSMS UPN48_class_I_Rep_3 7 490.28778076171875 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 82.506 1 86.213 85.713 86.713 3.7066 0 0 0 0.381 1 19558 19558 5.2307 2.3415 1 12074 7517 7556 7562 15000 15000 0.07494671893698523 HKCIRRPA 8 Unmodified _HKCIRRPA_ 0 0 0 REV__ENST00000523767.5_1_5:149932896-149933094:+|nuORF REV__ENST00000523767.5_1_5:149932896-149933094:+|nuORF MSMS UPN47_class_I_Rep_1 2 490.78302001953125 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 112.1 1 115.67 115.17 116.17 3.572 0 0 0 0.40625 1 27662 27662 2.3027 0 1 + 12075 22799 7557 7563 15001 15001 0.05919481824855666 HKDAIVLAVK 10 Unmodified _HKDAIVLAVK_ 0 0 0 ENST00000461141.5_1_3:183952309-183959823:+|nuORF;ENSG00000145198|ENST00000691901|VWA5B2 ENST00000461141.5_1_3:183952309-183959823:+|nuORF ENST00000461141.5_1_3:183952309-183959823:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.3321533203125 2 547.340041 1092.66553 NaN NaN NaN NaN NaN NaN NaN 92.802 1 96.523 96.023 97.023 3.7209 0 0 0 0.53105 1 23110 23110 1.3295 0.63916 1 12076 3388 7558 7564 15002 15002 0.1229028415666562 HKEIPLAY 8 Unmodified _HKEIPLAY_ 0 0 0 L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|26|3|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|26|3|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|26|3|sense MSMS UPN48_class_I_Rep_2 6 485.7722473144531 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 22.116 1 25.762 25.262 26.262 3.6459 0 0 0 0.40738 1 2207 2207 0.79363 0 1 12077 10560 7559 7565 15003 15003 0.04238375277122941 HKELEPFLL 9 Unmodified _HKELEPFLL_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MULTI-MSMS UPN48_class_I_Rep_2 6 563.3192749023438 2 563.318774 1124.623 0.48373 0.0002725 -0.25498 -0.00014364 0.22875 0.00012886 563.3185533515793 71.926 0.33841 75.476 75.197 75.535 3.5505 84 36 3 0 0 0 0.16559 1 16750 16750 24.021 24.021 1 329430 12078 3652 7560 7566 15004 15004 0.06566889028476908 HKELEPFLL 9 Unmodified _HKELEPFLL_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 563.318774 1124.623 0.47802 0.00026928 -0.27153 -0.00015296 0.20648 0.00011632 563.3186273504991 72.365 0.33268 75.838 75.758 76.091 3.4732 0.181 -1.1166E-05 NaN 24.021 60 27 3 NaN NaN NaN NaN 0 NaN NaN 0 243560 12079 3652 7560 7566 0.06566889028476908 HKERKIMIKG 10 Unmodified _HKERKIMIKG_ 0 0 0 L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|21|1|sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|21|1|sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|21|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 619.869384765625 2 620.371349 1238.72815 0.65765 0.00040799 -0.78899 -0.00048947 -0.13134 -8.1482E-05 620.370764931466 90.713 0.26085 90.713 90.659 90.92 0 45 29 2 0 0 0 0.84575 1 21879 21879 5.2969 5.2969 1 500930 12080 11325 7561 7567 15005 15005 0.11833106953213246 HKERKQRRK 9 Unmodified _HKERKQRRK_ 0 0 0 REV__nc|ENSG00000132970|Q9UPY6-2|WASF3 REV__nc|ENSG00000132970|Q9UPY6-2|WASF3 MULTI-MSMS UPN48_class_I_Rep_1 5 633.3690185546875 2 633.386711 1264.75887 0.44528 0.00028204 0.69478 0.00044007 1.1401 0.0007221 633.3868932034775 86.152 0.75278 89.765 89.232 89.985 3.613 107 82 2 0 0 0 0.48433 1 20509 20509 3.9444 2.4625 1 146000 + 12081 31982 7562 7568 15006 15006 0.13708021382490188 HKEVIPKT 8 Unmodified _HKEVIPKT_ 0 0 0 REV__nc|ENSG00000144285|P35498-3|SCN1A REV__nc|ENSG00000144285|P35498-3|SCN1A MSMS UPN46_class_I_Rep_3 1 476.3264465332031 2 476.284734 950.554916 NaN NaN NaN NaN NaN NaN NaN 108.56 1 108.56 108.06 109.06 0 0 0 0 0.39996 1 26556 26556 7.9102 0 1 + 12082 19480 7563 7569 15007 15007 0.07766064168481535 HKEYYSVLE 9 Unmodified _HKEYYSVLE_ 0 0 0 REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 584.287841796875 2 584.287671 1166.56079 0.54031 0.0003157 -0.030075 -1.7572E-05 0.51024 0.00029813 584.2876088876536 58.807 1.1016 62.294 61.875 62.977 3.487 247 69 5 0 0 0 0.090251 2 12840 12840;12877 36.127 3.3413 1 3861500 + 12083 21105 7564 7570 15008;15009 15008 -0.015828821105287716 HKFFIEGPI 9 Unmodified _HKFFIEGPI_ 0 0 0 REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|135|3|sense REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|135|3|sense MSMS UPN48_class_I_Rep_3 7 544.3014526367188 2 544.300384 1086.58622 NaN NaN NaN NaN NaN NaN NaN 41.402 1 45.048 44.548 45.548 3.6458 0 0 0 0.39518 1 7473 7473 1.8442 0.51471 1 + 12084 24847 7565 7571 15010 15010 0.046386372025835954 HKFHHIHY 8 Unmodified _HKFHHIHY_ 0 0 0 REV__L1MA6_dup375|chr2:15227148-15229059:+|1.151200753550431|0.0466600622690472|4.62|151.0|76|1|anti-sense REV__L1MA6_dup375|chr2:15227148-15229059:+|1.151200753550431|0.0466600622690472|4.62|151.0|76|1|anti-sense MSMS UPN47_class_I_Rep_3 4 559.78173828125 2 559.785767 1117.55698 NaN NaN NaN NaN NaN NaN NaN 30.768 1 34.08 33.58 34.58 3.3116 0 0 0 0.40604 1 5155 5155 2.5775 0.27475 1 + 12085 25463 7566 7572 15011 15011 0.0029053769694655784 HKFLWHAL 8 Unmodified _HKFLWHAL_ 0 0 0 REV__L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|159|1|anti-sense REV__L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|159|1|anti-sense MSMS UPN48_class_I_Rep_3 7 526.2952880859375 2 526.295436 1050.57632 NaN NaN NaN NaN NaN NaN NaN 35.662 1 39.329 38.829 39.829 3.6667 0 0 0 0.40738 1 5811 5811 0.79363 0 1 + 12086 25785 7567 7573 15012 15012 0.053054939878165897 HKGFLALQLP 10 Unmodified _HKGFLALQLP_ 0 0 0 REV__L1PBa_dup561|chr4:67465011-67466073:+|1.0174605939286612|0.3685851973585624|1.46|150.0|6|1|sense REV__L1PBa_dup561|chr4:67465011-67466073:+|1.0174605939286612|0.3685851973585624|1.46|150.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.334228515625 2 562.334759 1122.65496 0.63497 0.00035707 -0.21656 -0.00012178 0.41842 0.00023529 562.3340838451653 110.24 0.22588 113.77 113.7 113.93 3.5271 66 33 3 0 0 0 0.56333 1 26873 26873 1.4819 0.28856 1 156570 + 12087 30654 7568 7574 15013 15013 0.09854301502264207 HKGFLALQLP 10 Unmodified _HKGFLALQLP_ 0 0 0 REV__L1PBa_dup561|chr4:67465011-67466073:+|1.0174605939286612|0.3685851973585624|1.46|150.0|6|1|sense REV__L1PBa_dup561|chr4:67465011-67466073:+|1.0174605939286612|0.3685851973585624|1.46|150.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 562.334228515625 2 562.334759 1122.65496 0.63496 0.00035706 -0.14292 -8.0367E-05 0.49205 0.00027669 562.3341950050907 110.44 0.11722 113.96 113.91 114.02 3.5271 32 15 3 0 0 0 0.84575 1 26873 26873 1.4819 0.28856 1 126420 + 12088 30654 7568 7574 15014 15014 0.09854301502264207 HKGIKLNTTGK 11 Unmodified _HKGIKLNTTGK_ 0 0 0 REV__L1MC1_dup12739|chr21:44148770-44150012:-|2.0870060713026297|0.1905980378868259|3.45|151.0|27|3|sense REV__L1MC1_dup12739|chr21:44148770-44150012:-|2.0870060713026297|0.1905980378868259|3.45|151.0|27|3|sense MSMS UPN47_class_I_Rep_2 3 598.8592529296875 2 598.859129 1195.70371 NaN NaN NaN NaN NaN NaN NaN 53.425 1 56.752 56.252 57.252 3.3266 0 0 0 0.38417 1 11996 11996 2.086 0.24177 1 + 12089 26524 7569 7575 15015 15015 0.1136817007134141 HKGRRRWI 8 Unmodified _HKGRRRWI_ 0 0 0 REV__L1PA8A_dup392|chr3:4344274-4348582:+|2.81011986610894|0.2837244459964698|3.31|151.0|212|2|anti-sense REV__L1PA8A_dup392|chr3:4344274-4348582:+|2.81011986610894|0.2837244459964698|3.31|151.0|212|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.8331909179688 2 554.833583 1107.65261 NaN NaN NaN NaN NaN NaN NaN 102.38 1 106.17 105.67 106.67 3.7888 0 0 0 0.40738 1 25204 25204 0.79363 0 1 + 12090 30278 7570 7576 15016 15016 0.10309310607817679 HKGWAKWS 8 Unmodified _HKGWAKWS_ 0 0 0 ENST00000321892.8_1_17:65978893-65979136:+|nuORF ENST00000321892.8_1_17:65978893-65979136:+|nuORF ENST00000321892.8_1_17:65978893-65979136:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.2596740722656 2 500.261594 998.508634 -0.45369 -0.00022697 0.23494 0.00011753 -0.21875 -0.00010943 500.2592561396514 26.227 0.18368 29.575 29.495 29.679 3.3478 24 17 2 0 0 0 0.82752 1 3791 3791 0.69038 0 1 34787 12091 6154 7571 7577 15017 15017 0.0093204405702636 HKHNLKQK 8 Unmodified _HKHNLKQK_ 0 0 0 L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|149|3|sense L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|149|3|sense L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|149|3|sense MSMS UPN47_class_I_Rep_1 2 516.8060302734375 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 85.372 1 88.963 88.463 89.463 3.5914 0 0 0 0.40746 1 21318 21318 0.69038 0 1 12092 15187 7572 7578 15018 15018 0.08431093385456734 HKHPDLSF 8 Unmodified _HKHPDLSF_ 0 0 0 REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|132|1|anti-sense REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|132|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.75164794921875 2 490.751059 979.487565 NaN NaN NaN NaN NaN NaN NaN 25.616 1 28.967 28.467 29.467 3.3509 0 0 0 0.40625 1 3628 3628 2.3027 0 1 + 12093 30507 7573 7579 15019 15019 -0.0029996604247344294 HKHPPKERF 9 Unmodified _HKHPPKERF_ 0 0 0 L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|28|1|sense L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|28|1|sense L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|28|1|sense MSMS UPN48_class_I_Rep_3 7 588.3229370117188 2 588.325257 1174.63596 NaN NaN NaN NaN NaN NaN NaN 61.83 1 65.341 64.841 65.841 3.5104 0 0 0 0.39518 1 13695 13695 1.8442 0 1 12094 14453 7574 7580 15020 15020 0.0556276493121004 HKHRLVVCV 9 Unmodified _HKHRLVVCV_ 0 0 0 L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|75|2|anti-sense L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|75|2|anti-sense L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_2 3 545.8186645507812 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 84.665 1 88.089 87.589 88.589 3.4232 0 0 0 0.39428 1 21105 21105 2.0598 0 1 12095 12420 7575 7581 15021 15021 0.0817261054746723 HKHTKNYLLY 10 Unmodified _HKHTKNYLLY_ 0 0 0 L1MB7_dup7748|chr6:82208759-82209731:+|1.0572891958539037|0.1571581848673831|2.75|150.0|23|2|sense L1MB7_dup7748|chr6:82208759-82209731:+|1.0572891958539037|0.1571581848673831|2.75|150.0|23|2|sense L1MB7_dup7748|chr6:82208759-82209731:+|1.0572891958539037|0.1571581848673831|2.75|150.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.9093017578125 3 439.575178 1315.70371 0.054034 2.3752E-05 -0.25207 -0.0001108 -0.19803 -8.7051E-05 439.5750427030806 37.451 1.2253 41.114 40.644 41.869 3.663 237 126 2 0 0 0 0.55068 1 6406 6406 5.4027 0 1 209620 12096 10875 7576 7582 15022 15022 0.058481700713628015 HKHVLFPLYL 10 Unmodified _HKHVLFPLYL_ 0 0 0 REV__HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|38|2|sense REV__HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 633.870849609375 2 633.871508 1265.72846 NaN NaN NaN NaN NaN NaN NaN 87.569 1 91.016 90.516 91.516 3.4471 0 0 0 0.53105 1 21769 21769 1.6526 0.17072 1 + 12097 23674 7577 7583 15023 15023 0.10622849944752488 HKHYHYSD 8 Unmodified _HKHYHYSD_ 0 0 0 ENST00000543741.6_1_14:24436525-24436753:+|nuORF ENST00000543741.6_1_14:24436525-24436753:+|nuORF ENST00000543741.6_1_14:24436525-24436753:+|nuORF MSMS UPN47_class_I_Rep_3 4 543.7421875 2 543.741222 1085.46789 NaN NaN NaN NaN NaN NaN NaN 115.4 1 118.88 118.38 119.38 3.4802 0 0 0 0.40746 1 28376 28376 0.69038 0 1 12098 7364 7578 7584 15024 15024 -0.07142342053248285 HKIHVIQYTK 10 Unmodified _HKIHVIQYTK_ 0 0 0 REV__L1ME1_dup28447|chr18:36162034-36162950:-|1.5642520600730356|0.2581420909572722|2.6|151.0|30|3|sense REV__L1ME1_dup28447|chr18:36162034-36162950:-|1.5642520600730356|0.2581420909572722|2.6|151.0|30|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 633.3695068359375 2 633.869497 1265.72444 0.44491 0.00028201 2.303 0.0014598 2.7479 0.0017418 633.8711289346448 86.355 0.14449 89.968 89.855 89.999 3.613 24 18 2 0 0 0 0.84575 1 20679 20679 2.7352 1.0826 1 88102 + 12099 27734 7579 7585 15025 15025 0.10220760451034039 HKINYYIA 8 Unmodified _HKINYYIA_ 0 0 0 REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B MSMS UPN48_class_I_Rep_2 6 511.2759704589844 2 511.276909 1020.53927 NaN NaN NaN NaN NaN NaN NaN 32.894 1 36.544 36.044 37.044 3.6497 0 0 0 0.40604 1 5133 5133 2.5775 0 1 + 12100 32127 7580 7586 15026 15026 0.02981777651405082 HKITKVKCIR 10 Unmodified _HKITKVKCIR_ 0 0 0 REV__L1M5_dup54397|chr22:49578046-49578921:-|1.3214349773344751|0.0216841715273686|5.93|146.0|22|3|sense REV__L1M5_dup54397|chr22:49578046-49578921:-|1.3214349773344751|0.0216841715273686|5.93|146.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 409.25677490234375 3 409.256904 1224.74888 NaN NaN NaN NaN NaN NaN NaN 97.195 1 100.97 100.47 101.47 3.7767 0 0 0 0.53105 1 24089 24089 1.7423 0 1 + 12101 24701 7581 7587 15027 15027 0.14549697332904543 HKKCFHFH 8 Unmodified _HKKCFHFH_ 0 0 0 REV__L1MB5_dup8430|chr18:9744716-9747865:+|1.1564038845839535|0.0836392870305752|3.79|148.0|130|1|anti-sense REV__L1MB5_dup8430|chr18:9744716-9747865:+|1.1564038845839535|0.0836392870305752|3.79|148.0|130|1|anti-sense MSMS UPN48_class_I_Rep_3 7 542.2692260742188 2 542.268896 1082.52324 NaN NaN NaN NaN NaN NaN NaN 18.011 1 21.574 21.074 22.074 3.5637 0 0 0 0.40738 1 1119 1119 0.79363 0 1 + 12102 26101 7582 7588 15028 15028 -0.014722070664674902 HKKGLKHKQI 10 Unmodified _HKKGLKHKQI_ 0 0 0 REV__L1PB3_dup1876|chr9:100186455-100187521:-|1.0345274201155357|0.0134441015975746|6.27|151.0|17|2|sense REV__L1PB3_dup1876|chr9:100186455-100187521:-|1.0345274201155357|0.0134441015975746|6.27|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 406.2485046386719 3 406.259413 1215.75641 NaN NaN NaN NaN NaN NaN NaN 108.25 1 111.93 111.43 112.43 3.6746 0 0 0 0.53105 1 25653 25653 6.1918 2.8722 1 + 12103 30553 7583 7589 15029 15029 0.15716172924840066 HKKGQRLKLK 10 Unmodified _HKKGQRLKLK_ 0 0 0 REV__HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense REV__HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense MSMS UPN48_class_I_Rep_3 7 618.405029296875 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 75.85 1 79.433 78.933 79.933 3.5831 0 0 0 0.53105 1 17841 17841 0.40072 0 1 + 12104 23801 7584 7590 15030 15030 0.19060148333210236 HKKHLNKFKK 10 Unmodified _HKKHLNKFKK_ 0 0 0 L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|37|1|sense L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|37|1|sense L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|37|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.60809326171875 3 436.606813 1306.79861 0.18087 7.8969E-05 1.6922 0.00073881 1.873 0.00081778 436.6079107795981 60.162 0.46532 63.649 63.401 63.867 3.4868 70 39 3 0 0 0 0.56296 1 13294 13294 1.7423 0.52744 1 225910 12105 15047 7585 7591 15031 15031 0.15748148333182144 HKKKIAHF 8 Unmodified _HKKKIAHF_ 0 0 0 L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.8086853027344 2 504.808711 1007.60287 -0.013054 -6.5899E-06 0.17065 8.6147E-05 0.1576 7.9557E-05 504.80862226490757 26.952 0.26816 26.952 26.932 27.2 0 31 22 2 0 0 0 0.82752 1 3939 3939 0.79363 0.79363 1 494720 12106 13426 7586 7592 15032 15032 0.09937182879173179 HKKKIAHF 8 Unmodified _HKKKIAHF_ 0 0 0 L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense MSMS UPN46_class_I_Rep_3 1 504.8090515136719 2 504.808711 1007.60287 NaN NaN NaN NaN NaN NaN NaN 43.191 1 43.191 42.691 43.691 0 0 0 0 0.40738 1 8603 8603 0.79363 0.10326 1 12107 13426 7586 7592 15033 15033 0.09937182879173179 HKKKIAHF 8 Unmodified _HKKKIAHF_ 0 0 0 L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 504.80877685546875 2 504.808711 1007.60287 0.32658 0.00016486 0.12835 6.4791E-05 0.45492 0.00022965 504.808716815916 109.28 1.2833 112.88 112.76 114.04 3.6046 441 174 4 0 0 0 0.82752 1 27204 27204 0.79363 0.79363 1 10111000 12108 13426 7586 7592 15034 15034 0.09937182879173179 HKKLRGVP 8 Unmodified _HKKLRGVP_ 0 0 0 L1ME2_dup5753|chr7:102082654-102083316:-|1.4019371741753857|0.0049998581361621|8.13|145.0|30|1|anti-sense L1ME2_dup5753|chr7:102082654-102083316:-|1.4019371741753857|0.0049998581361621|8.13|145.0|30|1|anti-sense L1ME2_dup5753|chr7:102082654-102083316:-|1.4019371741753857|0.0049998581361621|8.13|145.0|30|1|anti-sense MSMS UPN48_class_I_Rep_1 5 467.8025207519531 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 83.607 1 87.194 86.694 87.694 3.5871 0 0 0 0.40746 1 19997 19997 0.69038 0.088878 1 12109 12508 7587 7593 15035 15035 0.11776896362130174 HKKRSQGYGG 10 Unmodified _HKKRSQGYGG_ 0 0 0 REV__MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|57|2|anti-sense REV__MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_3 4 559.254638671875 2 559.296696 1116.57884 NaN NaN NaN NaN NaN NaN NaN 28.735 1 32.069 31.569 32.569 3.3337 0 0 0 0.53105 1 4548 4548 1.4819 0.68827 1 + 12110 31415 7588 7594 15036 15036 0.025212976548345978 HKKWLWLI 8 Unmodified _HKKWLWLI_ 0 0 0 REV__ENSG00000165661|ENST00000358701|QSOX2 REV__ENSG00000165661|ENST00000358701|QSOX2 MSMS UPN48_class_I_Rep_1 5 562.2841186523438 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 57.619 1 61.114 60.614 61.614 3.4942 0 0 0 0.40746 1 12500 12500 0.69038 0.088878 1 + 12111 20129 7589 7595 15037 15037 0.11379213090117446 HKKWLWLI 8 Unmodified _HKKWLWLI_ 0 0 0 REV__ENSG00000165661|ENST00000358701|QSOX2 REV__ENSG00000165661|ENST00000358701|QSOX2 MSMS UPN48_class_I_Rep_1 5 562.0234375 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 81.552 1 85.115 84.615 85.615 3.5624 0 0 0 0.40746 1 19449 19449 0.69038 0 1 + 12112 20129 7589 7595 15038 15038 0.11379213090117446 HKKWPRQL 8 Unmodified _HKKWPRQL_ 0 0 0 REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|378|3|anti-sense REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|378|3|anti-sense MSMS UPN48_class_I_Rep_2 6 546.82568359375 2 546.824892 1091.63523 NaN NaN NaN NaN NaN NaN NaN 14.857 1 18.51 18.01 19.01 3.6535 0 0 0 0.40746 1 518 518 0.69038 0 1 + 12113 30240 7590 7596 15039 15039 0.09307970282179667 HKLHGRWV 8 Unmodified _HKLHGRWV_ 0 0 0 REV__MSTD_dup5468|chr11:76079880-76080223:-|1.5491342982636789|0.0194503295608527|6.32|151.0|26|2|anti-sense REV__MSTD_dup5468|chr11:76079880-76080223:-|1.5491342982636789|0.0194503295608527|6.32|151.0|26|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.7971801757812 2 516.796135 1031.57772 NaN NaN NaN NaN NaN NaN NaN 23.145 1 26.896 26.396 27.396 3.7507 0 0 0 0.40746 1 2483 2483 0.69038 0 1 + 12114 31919 7591 7597 15040 15040 0.06319128076597735 HKLTEEPL 8 Unmodified _HKLTEEPL_ 0 0 0 L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|10|1|sense;L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|11|1|sense;L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|11|1|sense;L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|54|3|sense;L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|49|3|sense;L1M1_dup847|chr2:64000160-64002429:-|3.4586797297157084|0.082810141889392|5.38|151.0|38|2|sense;L1MA3_dup6258|chr11:6579554-6581749:+|1.20910028558177|0.0604464226281136|4.32|151.0|10|1|sense;L1PA4_dup1403|chr2:148226113-148231635:-|1.6637721982120748|0.0485281896709338|5.1|151.0|16|1|sense;L1MA3_dup1680|chr3:114916474-114919066:-|1.0036142378960498|0.0248498428486025|5.34|150.0|39|2|sense;L1MA3_dup1781|chr3:142076775-142079104:+|3.213623463206147|0.0200348855938817|7.33|151.0|34|2|sense;L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|104|2|sense;L1MA3_dup1279|chr2:232096385-232098047:-|1.0308998041419235|0.0526859228343532|4.29|150.0|38|3|sense;L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|12|1|sense;L1MA2_dup3061|chr7:129305487-129308651:-|2.5420405689539827|0.0377060026497263|6.08|151.0|50|2|sense;L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|73|3|sense;L1M1_dup6539|chrY:13277323-13279254:+|1.0502352957658987|0.0939876640404154|3.48|85.0|14|1|sense;L1M1_dup5045|chrX:40720107-40723383:+|7.3884846385450755|0.4269610463829356|4.11|151.0|77|3|sense;L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|26|2|sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|10|1|sense L1M1_dup1272|chr2:202807037-202809367:+|2.002000273057136|0.132002185661457|3.92|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.76629638671875 2 483.766374 965.518196 0.20988 0.00010153 -0.18068 -8.7408E-05 0.029198 1.4125E-05 483.7662989701309 50.922 0.68162 54.138 53.789 54.47 3.2163 58 34 2 0 0 0 0.82752 1 11378 11378 2.0598 0 1 130590 12115 8484 7592 7598 15041 15041 0.03405767551907957 HKLTKERLR 9 Unmodified _HKLTKERLR_ 0 0 0 L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|91|3|sense L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|91|3|sense L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|91|3|sense MSMS UPN47_class_I_Rep_1 2 590.8657836914062 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 95.974 1 99.739 99.239 100.24 3.7648 0 0 0 0.39598 1 23811 23811 1.6526 0.32309 1 12116 9470 7593 7599 15042 15042 0.13735296028107769 HKMGCRIR 8 Unmodified _HKMGCRIR_ 0 0 0 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MSMS UPN48_class_I_Rep_1 5 500.7673034667969 2 500.768206 999.521858 NaN NaN NaN NaN NaN NaN NaN 29.928 1 33.47 32.97 33.97 3.542 0 0 0 0.40604 1 4230 4230 2.5775 0.27475 1 + 12117 19583 7594 7600 15043 15043 0.022078355731309784 HKNCFWGQFS 10 Unmodified _HKNCFWGQFS_ 0 0 0 ENST00000268719.8_1_17:17969538-17969679:+|nuORF ENST00000268719.8_1_17:17969538-17969679:+|nuORF ENST00000268719.8_1_17:17969538-17969679:+|nuORF MSMS UPN46_class_I_Rep_3 1 627.2808837890625 2 627.279657 1252.54476 NaN NaN NaN NaN NaN NaN NaN 45.832 1 45.832 45.332 46.332 0 0 0 0 0.53105 1 9351 9351 8.1555 1.9497 1 12118 6006 7595 7601 15044 15044 -0.07140866828422077 HKNKKKPLLC 10 Unmodified _HKNKKKPLLC_ 0 0 0 REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X MSMS UPN48_class_I_Rep_1 5 604.86767578125 2 604.868443 1207.72233 NaN NaN NaN NaN NaN NaN NaN 97.758 1 101.37 100.87 101.87 3.6088 0 0 0 0.53105 1 23580 23580 1.4819 0.95714 1 + 12119 18786 7596 7602 15045 15045 0.12678008441594102 HKNNEIMC 8 Unmodified _HKNNEIMC_ 0 0 0 L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|149|3|sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|149|3|sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|149|3|sense MSMS UPN47_class_I_Rep_3 4 494.7186584472656 2 494.720587 987.426621 NaN NaN NaN NaN NaN NaN NaN 21.128 1 24.478 23.978 24.978 3.3496 0 0 0 0.40625 1 2311 2311 2.3027 0 1 12120 15241 7597 7603 15046 15046 -0.06759562408592501 HKNTRNVKKK 10 Unmodified _HKNTRNVKKK_ 0 0 0 L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|52|2|sense L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|52|2|sense L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|52|2|sense MSMS UPN48_class_I_Rep_2 6 626.8634033203125 2 626.88347 1251.75239 NaN NaN NaN NaN NaN NaN NaN 98.81 1 102.58 102.08 103.08 3.7707 0 0 0 0.53105 1 23471 23471 1.3295 0.13619 1 12121 9820 7598 7604 15047 15047 0.1365808343111894 HKNVKMHQV 9 Unmodified _HKNVKMHQV_ 0 0 0 REV__L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|18|1|sense REV__L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 560.80419921875 2 560.805842 1119.59713 NaN NaN NaN NaN NaN NaN NaN 40.748 1 43.985 43.485 44.485 3.2372 0 0 0 0.39518 1 8195 8195 1.8442 0.19162 1 + 12122 29608 7599 7605 15048 15048 0.04211716305189839 HKPAHVTL 8 Unmodified _HKPAHVTL_ 0 0 0 L1PREC2_dup6985|chr17:62026502-62028560:+|1.781300216293855|0.077642694349908|4.52|151.0|24|1|sense L1PREC2_dup6985|chr17:62026502-62028560:+|1.781300216293855|0.077642694349908|4.52|151.0|24|1|sense L1PREC2_dup6985|chr17:62026502-62028560:+|1.781300216293855|0.077642694349908|4.52|151.0|24|1|sense MSMS UPN48_class_I_Rep_1 5 451.76312255859375 2 451.763969 901.513385 NaN NaN NaN NaN NaN NaN NaN 50.673 1 54.198 53.698 54.698 3.5246 0 0 0 0.3903 1 10373 10373 11.64 3.7301 1 12123 15479 7600 7606 15049 15049 0.05868928199799939 HKPHRAKQL 9 Unmodified _HKPHRAKQL_ 0 0 0 REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 557.8319702148438 2 557.833249 1113.65194 -0.037947 -2.1168E-05 -1.1978 -0.00066818 -1.2358 -0.00068934 557.8326957104548 32.862 0.38172 36.575 36.511 36.893 3.7131 42 28 2 0 0 0 0.48846 1 5800 5800 1.8442 0.19162 1 47942 + 12124 21058 7601 7607 15050 15050 0.099664711681271 HKPKVKQW 8 Unmodified _HKPKVKQW_ 0 0 0 L1PA13_dup4697|chr9:92696358-92697321:-|2.5374940700493696|0.0085008016830413|8.22|151.0|21|3|sense L1PA13_dup4697|chr9:92696358-92697321:-|2.5374940700493696|0.0085008016830413|8.22|151.0|21|3|sense L1PA13_dup4697|chr9:92696358-92697321:-|2.5374940700493696|0.0085008016830413|8.22|151.0|21|3|sense MSMS UPN47_class_I_Rep_3 4 525.8151245117188 2 525.813993 1049.61343 NaN NaN NaN NaN NaN NaN NaN 112.11 1 115.63 115.13 116.13 3.5207 0 0 0 0.40746 1 27530 27530 0.69038 0.16561 1 12125 13760 7602 7608 15051 15051 0.09061165533626081 HKPRYAKR 8 Unmodified _HKPRYAKR_ 0 0 0 REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|55|2|sense REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|55|2|sense MSMS UPN47_class_I_Rep_1 2 528.3140258789062 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.745 1 93.419 92.919 93.919 3.6738 0 0 0 0.40746 1 22439 22439 0.69038 0 1 + 12126 29374 7603 7609 15052 15052 0.08970799622352388 HKPRYAKR 8 Unmodified _HKPRYAKR_ 0 0 0 REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|55|2|sense REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|55|2|sense MSMS UPN47_class_I_Rep_2 3 528.3143310546875 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.539 1 92.991 92.491 93.491 3.4525 0 0 0 0.40746 1 22245 22245 0.69038 0 1 + 12127 29374 7603 7609 15053 15053 0.08970799622352388 HKPRYAKR 8 Unmodified _HKPRYAKR_ 0 0 0 REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|55|2|sense REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|55|2|sense MSMS UPN48_class_I_Rep_1 5 528.3134765625 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.507 1 93.133 92.633 93.633 3.6255 0 0 0 0.40746 1 21498 21498 0.69038 0 1 + 12128 29374 7603 7609 15054 15054 0.08970799622352388 HKQPYHLRLLR 11 Unmodified _HKQPYHLRLLR_ 0 0 0 REV__PLOD1|p.G365Afs*23|1|0.12|ENSG00000083444|chr1:11960762-11960762|G/-|frameshift_variant REV__PLOD1|p.G365Afs*23|1|0.12|ENSG00000083444|chr1:11960762-11960762|G/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 487.9587707519531 3 487.624755 1459.85244 0.2003 9.7669E-05 -0.31917 -0.00015564 -0.11888 -5.7967E-05 487.62450671837 56.476 0.24986 56.476 56.329 56.579 0 43 29 2 0 0 0 0.65891 1 12347 12347 2.4348 0 1 361070 + 12129 17931 7604 7610 15055 15055 0.14090320764898934 HKQPYHLRLLR 11 Unmodified _HKQPYHLRLLR_ 0 0 0 REV__PLOD1|p.G365Afs*23|1|0.12|ENSG00000083444|chr1:11960762-11960762|G/-|frameshift_variant REV__PLOD1|p.G365Afs*23|1|0.12|ENSG00000083444|chr1:11960762-11960762|G/-|frameshift_variant MULTI-SECPEP UPN46_class_I_Rep_3 1 487.21368408203125 3 487.624755 1459.85244 0.20028 9.7662E-05 -0.16876 -8.229E-05 0.031525 1.5372E-05 487.6247317402731 56.746 0.29783 56.746 56.664 56.961 0 58 34 2 0 0 0 22.551 1 12414 12414 1.2148 0.80657 1 345030 + 12130 17931 7604 7610 15056 15056 0.14090320764898934 HKREHIQF 8 Unmodified _HKREHIQF_ 0 0 0 REV__ENSG00000198429.10,ZNF69,chr19,+,I1.1,11887987,11903572|30|9.86|4|intron REV__ENSG00000198429.10,ZNF69,chr19,+,I1.1,11887987,11903572|30|9.86|4|intron MULTI-MSMS UPN48_class_I_Rep_1 5 547.7958984375 2 547.796332 1093.57811 0.47845 0.00026209 -0.3482 -0.00019074 0.13025 7.1352E-05 547.7960960342984 53.352 0.64044 56.872 56.49 57.13 3.5192 80 46 2 0 0 0 0.82752 1 11224 11224 14.838 1.7958 1 312610 + 12131 21053 7605 7611 15057 15057 0.03506503005792183 HKREHIQF 8 Unmodified _HKREHIQF_ 0 0 0 REV__ENSG00000198429.10,ZNF69,chr19,+,I1.1,11887987,11903572|30|9.86|4|intron REV__ENSG00000198429.10,ZNF69,chr19,+,I1.1,11887987,11903572|30|9.86|4|intron MULTI-MSMS UPN48_class_I_Rep_2 6 547.7968139648438 2 547.796332 1093.57811 0.5483 0.00030036 -0.6244 -0.00034204 -0.076096 -4.1685E-05 547.79591620888 53.199 0.65018 56.809 56.451 57.101 3.6098 73 41 2 0 0 0 0.82752 1 11068 11068 20.454 2.3073 1 333620 + 12132 21053 7605 7611 15058 15058 0.03506503005792183 HKRHDLLLF 9 Unmodified _HKRHDLLLF_ 0 0 0 L1PA14_dup936|chr4:152525311-152526227:-|1.967234421826751|0.0939029497453617|4.39|151.0|61|3|anti-sense L1PA14_dup936|chr4:152525311-152526227:-|1.967234421826751|0.0939029497453617|4.39|151.0|61|3|anti-sense L1PA14_dup936|chr4:152525311-152526227:-|1.967234421826751|0.0939029497453617|4.39|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_3 7 589.844482421875 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 82.692 1 86.399 85.899 86.899 3.7066 0 0 0 0.38639 1 19601 19601 3.9444 0 1 12133 13867 7606 7612 15059 15059 0.09028222108076989 HKRLDDPSF 9 Unmodified _HKRLDDPSF_ 0 0 0 REV__ENST00000571307.1_1_17:5433304-5487319:-|nuORF REV__ENST00000571307.1_1_17:5433304-5487319:-|nuORF MSMS UPN48_class_I_Rep_3 7 557.7745971679688 2 557.78563 1113.55671 NaN NaN NaN NaN NaN NaN NaN 67.907 1 71.415 70.915 71.915 3.5077 0 0 0 0.26661 1 15538 15538 12.532 4.6214 1 + 12134 18024 7607 7613 15060 15060 0.0044707318641030724 HKRLRRILY 9 Unmodified _HKRLRRILY_ 0 0 0 L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|64|3|sense L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|64|3|sense L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|64|3|sense MSMS UPN46_class_I_Rep_3 1 628.2315673828125 2 627.898923 1253.78329 NaN NaN NaN NaN NaN NaN NaN 56.604 1 56.604 56.104 57.104 0 0 0 0 0.4007 1 12355 12355 0.52476 0 1 12135 10295 7608 7614 15061 15061 0.16655281536031907 HKRRFTHTHM 10 Unmodified _HKRRFTHTHM_ 0 0 0 REV__L1M4_dup6497|chr6:37892441-37893447:+|2.60279995498972|0.0127645715712292|7.67|151.0|9|1|sense REV__L1M4_dup6497|chr6:37892441-37893447:+|2.60279995498972|0.0127645715712292|7.67|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 450.2344055175781 3 450.903523 1349.68874 0.15279 6.8895E-05 -0.82092 -0.00037016 -0.66813 -0.00030126 451.2375246146499 99.809 0.14204 103.57 103.53 103.67 3.7575 18 17 2 0 0 0 0.84575 1 23717 23717 0.77653 0.078866 1 174670 + 12136 24441 7609 7615 15062 15062 0.02788399722385293 HKRSRELPR 9 Unmodified _HKRSRELPR_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MSMS UPN47_class_I_Rep_1 2 589.8447875976562 2 589.846887 1177.67922 NaN NaN NaN NaN NaN NaN NaN 84.721 1 88.312 87.812 88.812 3.5914 0 0 0 0.37692 1 21189 21189 6.2058 2.2614 1 + 12137 20652 7610 7616 15063 15063 0.09748954708493329 HKRSRELPR 9 Unmodified _HKRSRELPR_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MSMS UPN47_class_I_Rep_2 3 589.8448486328125 2 589.846887 1177.67922 NaN NaN NaN NaN NaN NaN NaN 85.022 1 88.445 87.945 88.945 3.4232 0 0 0 0.37692 1 21172 21172 6.2058 0.9089 1 + 12138 20652 7610 7616 15064 15064 0.09748954708493329 HKRSRELPR 9 Unmodified _HKRSRELPR_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MSMS UPN47_class_I_Rep_3 4 589.84521484375 2 589.846887 1177.67922 NaN NaN NaN NaN NaN NaN NaN 85.171 1 88.532 88.032 89.032 3.3615 0 0 0 0.37692 1 21352 21352 6.2058 0 1 + 12139 20652 7610 7616 15065 15065 0.09748954708493329 HKRSVSVTS 9 Unmodified _HKRSVSVTS_ 0 0 0 ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1 ENSG00000143344|ENST00000360851|RGL1 ENSG00000143344|ENST00000360851|RGL1 MSMS UPN48_class_I_Rep_3 7 500.7799072265625 2 500.780348 999.546142 NaN NaN NaN NaN NaN NaN NaN 32.241 1 35.942 35.442 36.442 3.7015 0 0 0 0.39598 1 4873 4873 1.6526 0.85899 1 12140 3290 7611 7617 15066 15066 0.04635090532008235 HKRVLLWG 8 Unmodified _HKRVLLWG_ 0 0 0 REV__ENSG00000099194|ENST00000370355|SCD REV__ENSG00000099194|ENST00000370355|SCD MULTI-MSMS UPN47_class_I_Rep_1 2 504.8088684082031 2 504.808711 1007.60287 0.32558 0.00016435 0.13756 6.944E-05 0.46313 0.00023379 504.8086136888936 110.66 0.12746 114.24 114.14 114.27 3.5835 30 15 2 0 0 0 0.82752 1 27275 27275 0.79363 0 1 378700 + 12141 18062 7612 7618 15067 15067 0.09937182879184547 HKRWIHVK 8 Unmodified _HKRWIHVK_ 0 0 0 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 MSMS UPN48_class_I_Rep_3 7 552.3325805664062 2 552.332885 1102.65122 NaN NaN NaN NaN NaN NaN NaN 42.909 1 46.55 46.05 47.05 3.6415 0 0 0 0.40746 1 7920 7920 0.69038 0 1 12142 4407 7613 7619 15068 15068 0.10399676519068635 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN46_class_I_Rep_3 1 627.3684692382812 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 71.604 1 71.604 71.104 72.104 0 0 0 0 0.38417 1 16505 16505 4.897 1.9018 1 + 12143 29792 7614 7620 15069 15069 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_1 2 627.367431640625 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 63.303 1 66.663 66.163 67.163 3.3595 0 0 0 0.38417 1 14970 14970 4.897 1.9018 1 + 12144 29792 7614 7620 15070 15070 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_1 2 627.365966796875 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 67.511 1 70.872 70.372 71.372 3.3611 0 0 0 0.38417 1 16238 16238 4.897 1.9018 1 + 12145 29792 7614 7620 15071 15071 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_1 2 627.36669921875 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 68.108 1 71.472 70.972 71.972 3.3646 0 0 0 0.38417 1 16421 16421 2.4985 1.0166 1 + 12146 29792 7614 7620 15072 15072 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_3 4 627.296630859375 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 61.796 1 64.962 64.462 65.462 3.1667 0 0 0 0.38417 1 14604 14604 2.4985 0.84587 1 + 12147 29792 7614 7620 15073 15073 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_3 4 627.3673706054688 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 67.347 1 70.538 70.038 71.038 3.1914 0 0 0 0.38417 1 16301 16301 4.897 1.9018 1 + 12148 29792 7614 7620 15074 15074 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_3 4 627.3678588867188 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 67.686 1 70.877 70.377 71.377 3.1914 0 0 0 0.38417 1 16402 16402 4.897 1.6157 1 + 12149 29792 7614 7620 15075 15075 0.10891555100101868 HKSKQGQLLKS 11 Unmodified _HKSKQGQLLKS_ 0 0 0 REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense REV__L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN48_class_I_Rep_2 6 627.3673706054688 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 67.258 1 70.754 70.254 71.254 3.4964 0 0 0 0.38417 1 15430 15430 4.897 1.9018 1 + 12150 29792 7614 7620 15076 15076 0.10891555100101868 HKSLYTSWGFA 11 Unmodified _HKSLYTSWGFA_ 0 0 0 REV__ENSG00000186777|ENST00000419098|ZNF732 REV__ENSG00000186777|ENST00000419098|ZNF732 MSMS UPN47_class_I_Rep_2 3 432.8851013183594 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 105.84 1 109.37 108.87 109.87 3.5345 0 0 0 0.38417 1 25655 25655 1.3296 0.31607 1 + 12151 20904 7615 7621 15077 15077 -0.006117980909493781 HKSPIHIL 8 Unmodified _HKSPIHIL_ 0 0 0 L1MD2_dup7129|chr10:38024182-38024676:+|1.4391118952671926|0.0639432589737679|4.49|151.0|22|1|anti-sense L1MD2_dup7129|chr10:38024182-38024676:+|1.4391118952671926|0.0639432589737679|4.49|151.0|22|1|anti-sense L1MD2_dup7129|chr10:38024182-38024676:+|1.4391118952671926|0.0639432589737679|4.49|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_3 4 472.7893371582031 2 472.787444 943.560336 NaN NaN NaN NaN NaN NaN NaN 87.236 1 90.616 90.116 91.116 3.3801 0 0 0 0.40604 1 21859 21859 2.5775 0 1 12152 12026 7616 7622 15078 15078 0.0862978775095371 HKSSETMRY 9 Unmodified _HKSSETMRY_ 0 0 0 L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|31|2|sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|31|2|sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|31|2|sense MSMS UPN47_class_I_Rep_1 2 569.7693481445312 2 569.769123 1137.52369 NaN NaN NaN NaN NaN NaN NaN 36.288 1 39.957 39.457 40.457 3.6692 0 0 0 0.38478 1 6755 6755 4.3292 0 1 12153 11174 7617 7623 15079 15079 -0.03956876927918529 HKSVPKKK 8 Unmodified _HKSVPKKK_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MSMS UPN46_class_I_Rep_3 1 476.3068542480469 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 66.597 1 66.597 66.097 67.097 0 0 0 0 0.40625 1 15119 15119 2.3027 1.6124 1 + 12154 17767 7618 7624 15080 15080 0.12525763159328562 HKSVPKKK 8 Unmodified _HKSVPKKK_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MSMS UPN46_class_I_Rep_3 1 476.30694580078125 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 72.134 1 72.134 71.634 72.634 0 0 0 0 0.40625 1 16657 16657 2.3027 1.6124 1 + 12155 17767 7618 7624 15081 15081 0.12525763159328562 HKTEKIYY 8 Unmodified _HKTEKIYY_ 0 0 0 REV__HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|8|1|sense REV__HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 541.2861328125 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 40.014 1 40.014 39.514 40.514 0 0 0 0 0.40738 1 7737 7737 0.79363 0 1 + 12156 23344 7619 7625 15082 15082 0.023337429602634074 HKTSVTRRK 9 Unmodified _HKTSVTRRK_ 0 0 0 MER21B_dup12|chr1:17434264-17434827:+|1.8682141995036792|0.0173334643658038|6.75|151.0|18|1|anti-sense MER21B_dup12|chr1:17434264-17434827:+|1.8682141995036792|0.0173334643658038|6.75|151.0|18|1|anti-sense MER21B_dup12|chr1:17434264-17434827:+|1.8682141995036792|0.0173334643658038|6.75|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.83544921875 2 556.835988 1111.65742 0.048447 2.6977E-05 -0.68036 -0.00037885 -0.63191 -0.00035187 556.8356931816512 13.346 0.27942 16.734 16.629 16.908 3.388 44 33 2 0 0 0 0.50015 1 335 335 0.6015 0 1 37248 12157 15863 7620 7626 15083 15083 0.1060614995992637 HKTVPVKAFP 10 Unmodified _HKTVPVKAFP_ 0 0 0 ENST00000520757.1_1_8:96047742-96087920:+|nuORF;ENST00000517976.5_1_8:96047742-96070162:+|nuORF;nc|ENSG00000156170|Q330K2-2|NDUFAF6;ENSG00000156170|ENST00000396124|NDUFAF6 ENST00000520757.1_1_8:96047742-96087920:+|nuORF ENST00000520757.1_1_8:96047742-96087920:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 562.8352661132812 2 562.334759 1122.65496 0.50629 0.0002847 -0.91254 -0.00051316 -0.40626 -0.00022845 562.3342153781273 110.73 0.1707 114.31 114.26 114.43 3.5835 26 19 2 0 0 0 0.56333 1 27316 27316 1.4819 1.4819 1 524840 12158 3723 7621 7627 15084 15084 0.09854301502264207 HKVEMKMKQK 10 Unmodified _HKVEMKMKQK_ 0 0 0 REV__nc|ENSG00000168781|Q6PFW1-6|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-6|PPIP5K1 MULTI-MSMS UPN46_class_I_Rep_3 1 643.8590087890625 2 643.857218 1285.69988 0.68457 0.00044076 2.5668 0.0016526 3.2513 0.0020934 643.858385682062 62.79 0.4378 62.79 62.624 63.061 0 55 41 2 0 0 0 0.56118 1 14044 14044 2.9952 1.5133 1 232150 + 12159 20282 7622 7628 15085 15085 0.06846040981645274 HKVFQKVP 8 Unmodified _HKVFQKVP_ 0 0 0 REV__nc|ENSG00000144724|P23470-2|PTPRG REV__nc|ENSG00000144724|P23470-2|PTPRG MSMS UPN48_class_I_Rep_3 7 491.79608154296875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 81.36 1 85.045 84.545 85.545 3.685 0 0 0 0.40625 1 19259 19259 2.3027 0 1 + 12160 19492 7623 7629 15086 15086 0.08446074267999393 HKVKCLCK 8 Unmodified _HKVKCLCK_ 0 0 0 REV__LTR5B_dup149|chr7:32513608-32514433:-|1.9815086465366976|0.0631125172072032|4.97|151.0|5|1|sense REV__LTR5B_dup149|chr7:32513608-32514433:-|1.9815086465366976|0.0631125172072032|4.97|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.7696838378906 2 479.769883 957.525212 -0.3842 -0.00018433 -0.33276 -0.00015965 -0.71696 -0.00034398 479.7697298493468 12.365 0.15256 15.815 15.743 15.895 3.45 27 20 2 0 0 0 0.82752 1 64 64 0.69038 0 1 39063 + 12161 30980 7624 7630 15087 15087 0.04475085627120734 HKVKCLCK 8 Unmodified _HKVKCLCK_ 0 0 0 REV__LTR5B_dup149|chr7:32513608-32514433:-|1.9815086465366976|0.0631125172072032|4.97|151.0|5|1|sense REV__LTR5B_dup149|chr7:32513608-32514433:-|1.9815086465366976|0.0631125172072032|4.97|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 480.2713928222656 2 479.769883 957.525212 -0.3842 -0.00018433 -0.33276 -0.00015965 -0.71696 -0.00034398 479.7697298493468 12.365 0.15256 15.815 15.743 15.895 3.45 27 20 2 0 0 0 0.72333 1 78 78 0.69038 0 1 39063 + 12162 30980 7624 7630 15088 15088 0.04475085627120734 HKVKMMKG 8 Unmodified _HKVKMMKG_ 0 0 0 LTR8B_dup555|chr6:42624459-42625131:-|1.7034041067893737|0.0290331228561253|5.87|150.0|13|2|sense LTR8B_dup555|chr6:42624459-42625131:-|1.7034041067893737|0.0290331228561253|5.87|150.0|13|2|sense LTR8B_dup555|chr6:42624459-42625131:-|1.7034041067893737|0.0290331228561253|5.87|150.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 479.7696228027344 2 479.769883 957.525212 NaN NaN NaN NaN NaN NaN NaN 12.145 1 15.521 15.021 16.021 3.3753 0 0 0 0.40746 1 26 26 0.69038 0 1 12163 15727 7625 7631 15089 15089 0.044750856271434714 HKVKYRKR 8 Unmodified _HKVKYRKR_ 0 0 0 REV__HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|20|2|anti-sense REV__HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|20|2|anti-sense MSMS UPN47_class_I_Rep_1 2 557.8501586914062 2 557.851442 1113.68833 NaN NaN NaN NaN NaN NaN NaN 21.511 1 25.186 24.686 25.686 3.6749 0 0 0 0.40746 1 2346 2346 0.69038 0.16561 1 + 12164 23923 7626 7632 15090 15090 0.13603348064839338 HKVTHIYW 8 Unmodified _HKVTHIYW_ 0 0 0 REV__L1MB8_dup9986|chr10:29652044-29653000:-|1.5917937959659936|0.0294010978340838|5.76|151.0|4|1|sense REV__L1MB8_dup9986|chr10:29652044-29653000:-|1.5917937959659936|0.0294010978340838|5.76|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 542.2908325195312 2 542.290351 1082.56615 NaN NaN NaN NaN NaN NaN NaN 79.423 1 82.958 82.458 83.458 3.5352 0 0 0 0.40604 1 18957 18957 2.5775 0.27475 1 + 12165 26454 7627 7633 15091 15091 0.028168862625989277 HKWKYIYYA 9 Unmodified _HKWKYIYYA_ 0 0 0 L1ME3_dup3249|chr6:37897952-37898894:-|2.0432483438337035|0.0107513361770113|7.57|150.0|4|1|sense L1ME3_dup3249|chr6:37897952-37898894:-|2.0432483438337035|0.0107513361770113|7.57|150.0|4|1|sense L1ME3_dup3249|chr6:37897952-37898894:-|2.0432483438337035|0.0107513361770113|7.57|150.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 636.33544921875 2 636.332216 1270.64988 NaN NaN NaN NaN NaN NaN NaN 62.305 1 65.673 65.173 66.173 3.3681 0 0 0 0.39518 1 14669 14669 1.8442 0 1 12166 12590 7628 7634 15092 15092 0.025379976396834536 HKWRIYYKKRL 11 Unmodified _HKWRIYYKKRL_ 0 0 0 nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL nc|ENSG00000009950|Q9NP71-3|MLXIPL nc|ENSG00000009950|Q9NP71-3|MLXIPL MSMS UPN48_class_I_Rep_1 5 530.9851684570312 3 530.984172 1589.93069 NaN NaN NaN NaN NaN NaN NaN 98.362 1 101.97 101.47 102.47 3.6065 0 0 0 0.38417 1 23736 23736 0.08335 0.08335 1 12167 748 7629 7635 15093 15093 0.1593175335012802 HKWYVFFH 8 Unmodified _HKWYVFFH_ 0 0 0 REV__L1MA5A_dup574|chr2:206067269-206067601:+|1.0227141401479731|0.0044752605238382|7.84|151.0|18|2|anti-sense REV__L1MA5A_dup574|chr2:206067269-206067601:+|1.0227141401479731|0.0044752605238382|7.84|151.0|18|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 582.2908325195312 2 582.292894 1162.57123 0.43739 0.00025469 -1.4102 -0.00082117 -0.97285 -0.00056648 582.292006165366 77.398 0.21098 80.92 80.832 81.043 3.5221 30 19 2 0 0 0 0.72333 1 18402 18402 0.79363 0.19213 1 306140 + 12168 25430 7630 7636 15094 15094 -0.003548098747842232 HKYKCCYW 8 Unmodified _HKYKCCYW_ 0 0 0 REV__L1MB5_dup7224|chr15:43546959-43548014:-|1.262650372244836|0.0670762028365889|4.23|151.0|34|3|sense REV__L1MB5_dup7224|chr15:43546959-43548014:-|1.262650372244836|0.0670762028365889|4.23|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 565.7498779296875 2 565.749147 1129.48374 NaN NaN NaN NaN NaN NaN NaN 28.201 1 31.534 31.034 32.034 3.3337 0 0 0 0.40604 1 4389 4389 2.5775 0.92486 1 + 12169 26096 7631 7637 15095 15095 -0.07582095132238464 HKYPIKIQ 8 Unmodified _HKYPIKIQ_ 0 0 0 REV__L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|9|1|sense REV__L1M4a1_dup1019|chr5:177642573-177643270:-|1.0965898905537494|0.010957832309388|6.64|150.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 513.8068237304688 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 74.27 1 77.506 77.006 78.006 3.2363 0 0 0 0.40625 1 18374 18374 2.3027 0 1 + 12170 24475 7632 7638 15096 15096 0.0904234343945518 HKYRRYQW 8 Unmodified _HKYRRYQW_ 0 0 0 ENST00000470889.5_1_3:138341046-138341142:+|nuORF ENST00000470889.5_1_3:138341046-138341142:+|nuORF ENST00000470889.5_1_3:138341046-138341142:+|nuORF MSMS UPN46_class_I_Rep_3 1 618.8253784179688 2 618.822881 1235.63121 NaN NaN NaN NaN NaN NaN NaN 76.728 1 76.728 76.228 77.228 0 0 0 0 0.40746 1 17916 17916 0.69038 0.088878 1 12171 6922 7633 7639 15097 15097 0.022818807884505077 HLAARFSRP 9 Unmodified _HLAARFSRP_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-2|NOTCH4 ENSG00000204301|ENST00000375023|NOTCH4 ENSG00000204301|ENST00000375023|NOTCH4 MSMS UPN47_class_I_Rep_1 2 527.796875 2 527.798875 1053.5832 NaN NaN NaN NaN NaN NaN NaN 34.1 1 37.786 37.286 38.286 3.6859 0 0 0 0.3967 1 6092 6092 1.4819 0.68827 1 12172 5513 7634 7640 15098 15098 0.05854806868410378 HLAFPFPL 8 Unmodified _HLAFPFPL_ 0 0 0 REV__L1MC4_dup2576|chr2:71337700-71338407:-|2.286878613521085|0.1812069774165271|3.66|151.0|46|2|anti-sense REV__L1MC4_dup2576|chr2:71337700-71338407:-|2.286878613521085|0.1812069774165271|3.66|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.2651062011719 2 471.265813 940.517074 NaN NaN NaN NaN NaN NaN NaN 31.172 1 34.902 34.402 35.402 3.7293 0 0 0 0.4032 1 5193 5193 6.3541 0.59368 1 + 12173 26898 7635 7641 15099 15099 0.044435979736590525 HLAKHVQL 8 Unmodified _HLAKHVQL_ 0 0 0 ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF;ENSG00000052749.14,RRP12,chr10,-,I20.1,97379771,97380798|50|22.55|2|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron MSMS UPN46_class_I_Rep_3 1 473.2848815917969 2 473.285069 944.555585 NaN NaN NaN NaN NaN NaN NaN 82.105 1 82.105 81.605 82.605 0 0 0 0 0.37681 1 19430 19430 15.847 4.2069 1 12174 923 7636 7642 15100 15100 0.08108903608183482 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MSMS UPN46_class_I_Rep_3 1 525.8069458007812 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 44.969 1 44.969 44.469 45.469 0 0 0 0 0.081356 1 9102 9102 28.495 7.6233 1 12175 2740 7637 7643 15101 15101 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MSMS UPN46_class_I_Rep_3 1 525.8062133789062 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 45.256 1 45.256 44.756 45.756 0 0 0 0 0.10979 1 9185 9185 22.658 8.0764 1 12176 2740 7637 7643 15102 15102 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS UPN47_class_I_Rep_1 2 525.8060913085938 2 525.806365 1049.59818 -0.092781 -4.8785E-05 -0.24347 -0.00012802 -0.33625 -0.0001768 525.8061178627254 38.923 1.1281 42.588 42.178 43.306 3.6652 164 77 3 0 0 0 0.071184 5 7577 7498;7540;7577;7618;7658 40.725 17.989 1 264610 12177 2740 7637 7643 15103;15104;15105;15106;15107 15105 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS UPN47_class_I_Rep_2 3 525.8063354492188 2 525.806365 1049.59818 -0.29207 -0.00015357 0.036746 1.9321E-05 -0.25533 -0.00013425 525.8062484751403 39.361 1.3208 42.739 42.296 43.617 3.3785 163 80 3 0 0 0 0.071184 7 7725 7639;7678;7725;7771;7811;7851;7916 40.725 14.457 1 276260 12178 2740 7637 7643 15108;15109;15110;15111;15112;15113;15114 15110 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS UPN47_class_I_Rep_3 4 525.80615234375 2 525.806365 1049.59818 -0.13177 -6.9283E-05 -0.1876 -9.8639E-05 -0.31936 -0.00016792 525.8061743726473 39.603 1.1638 42.841 42.349 43.513 3.238 146 76 3 0 0 0 0.10225 6 7859 7737;7779;7816;7859;7902;7948 33.445 10.709 1 237070 12179 2740 7637 7643 15115;15116;15117;15118;15119;15120 15118 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MSMS UPN47_class_I_Rep_3 4 525.805419921875 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 40.087 1 43.324 42.824 43.824 3.2372 0 0 0 0.11743 1 7993 7993 21.59 7.6841 1 12180 2740 7637 7643 15121 15121 0.07536253945750104 HLAPYSDEL 9 Unmodified _HLAPYSDEL_ 0 0 0 ENSG00000118137|ENST00000236850|APOA1 ENSG00000118137|ENST00000236850|APOA1 ENSG00000118137|ENST00000236850|APOA1 MSMS UPN47_class_I_Rep_1 2 522.7531127929688 2 522.753464 1043.49238 NaN NaN NaN NaN NaN NaN NaN 44.545 1 48.24 47.74 48.74 3.6951 0 0 0 0.29868 1 9271 9271 10.824 4.1008 1 12181 2242 7638 7644 15122 15122 -0.027631266903881624 HLAQQLQLV 9 Unmodified _HLAQQLQLV_ 0 0 0 ERV3-16A3_I-int_dup2720|chr6:73286914-73288329:+|1.3917030102296912|0.1382337796221882|3.33|151.0|77|3|anti-sense ERV3-16A3_I-int_dup2720|chr6:73286914-73288329:+|1.3917030102296912|0.1382337796221882|3.33|151.0|77|3|anti-sense ERV3-16A3_I-int_dup2720|chr6:73286914-73288329:+|1.3917030102296912|0.1382337796221882|3.33|151.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.802001953125 2 525.308741 1048.60293 -0.051609 -2.7111E-05 -0.46639 -0.000245 -0.518 -0.00027211 525.3085181833579 42.079 0.59874 45.758 45.429 46.028 3.6792 53 40 2 0 0 0 0.46434 1 8455 8455 4.3292 0 1 54541 12182 7707 7639 7645 15123 15123 0.08057138088520333 HLARLRKRRL 10 Unmodified _HLARLRKRRL_ 0 0 0 L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|8|1|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|8|1|sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|8|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.79913330078125 3 440.29334 1317.85819 0.095585 4.2086E-05 -2.2515 -0.00099131 -2.1559 -0.00094923 440.6267298833678 64.134 0.064095 64.134 64.121 64.185 0 6 5 2 0 0 0 0.84575 1 14420 14420 0.15932 0.15932 1 64266 12183 9329 7640 7646 15124 15124 0.21197464067245164 HLARRQRN 8 Unmodified _HLARRQRN_ 0 0 0 REV__L1PA8A_dup1445|chrX:9503010-9506979:+|2.698853459579034|0.0545453397783114|5.63|151.0|23|1|sense REV__L1PA8A_dup1445|chrX:9503010-9506979:+|2.698853459579034|0.0545453397783114|5.63|151.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 525.8059692382812 2 525.805023 1049.59549 NaN NaN NaN NaN NaN NaN NaN 40.109 1 43.347 42.847 43.847 3.2372 0 0 0 0.38547 1 7999 7999 13.508 1.2672 1 + 12184 29653 7641 7647 15125 15125 0.07267843331464974 HLASLDPEVY 10 Unmodified _HLASLDPEVY_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;ENSG00000009335.18,UBE3C,chr7,+,I20.1,157248625,157253953|29|7.95|1|intron;ENST00000470408.5_1_7:157015856-157060446:+|nuORF ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MSMS UPN48_class_I_Rep_2 6 571.8062744140625 2 572.287671 1142.56079 NaN NaN NaN NaN NaN NaN NaN 53.627 1 57.236 56.736 57.736 3.6098 0 0 0 0.53105 1 11258 11258 6.2058 0.47393 1 12185 746 7642 7648 15126 15126 -0.004788821105194074 HLASVTGLLL 10 Unmodified _HLASVTGLLL_ 0 0 0 REV__ENSG00000156575|ENST00000287143|PRG3 REV__ENSG00000156575|ENST00000287143|PRG3 MULTI-MSMS UPN47_class_I_Rep_1 2 512.313720703125 2 512.313492 1022.61243 0.18281 9.3658E-05 -0.29248 -0.00014984 -0.10966 -5.6181E-05 512.3134060671982 53.746 0.93441 57.273 56.861 57.795 3.5278 76 55 2 0 0 0 0.35076 2 12058 12058;12138 24.021 0 1 161010 + 12186 19798 7643 7649 15127;15128 15127 0.10202906374058784 HLASVTGLLL 10 Unmodified _HLASVTGLLL_ 0 0 0 REV__ENSG00000156575|ENST00000287143|PRG3 REV__ENSG00000156575|ENST00000287143|PRG3 MULTI-MSMS UPN47_class_I_Rep_2 3 512.3137817382812 2 512.313492 1022.61243 0.19122 9.7965E-05 -0.57575 -0.00029496 -0.38453 -0.000197 512.3133528390848 53.999 1.0754 57.318 56.934 58.01 3.3187 84 60 2 0 0 0 0.30832 1 12195 12195 30.637 0 1 153210 + 12187 19798 7643 7649 15129 15129 0.10202906374058784 HLASVTGLLL 10 Unmodified _HLASVTGLLL_ 0 0 0 REV__ENSG00000156575|ENST00000287143|PRG3 REV__ENSG00000156575|ENST00000287143|PRG3 MULTI-MSMS UPN47_class_I_Rep_3 4 512.3131103515625 2 512.313492 1022.61243 0.28589 0.00014647 -0.81444 -0.00041725 -0.52855 -0.00027078 512.3131921843761 54.209 0.91269 57.394 56.996 57.909 3.1856 91 57 2 0 0 0 0.25725 2 12277 12277;12398 37.974 0 1 125400 + 12188 19798 7643 7649 15130;15131 15130 0.10202906374058784 HLAVNVNKGV 10 Unmodified _HLAVNVNKGV_ 0 0 0 HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.8065795898438 2 525.806365 1049.59818 -0.092781 -4.8785E-05 -0.24347 -0.00012802 -0.33625 -0.0001768 525.8061178627254 38.923 1.1281 42.588 42.178 43.306 3.6652 164 77 3 0 0 0 0.54466 1 7453 7453 6.2058 0 1 264610 12189 8227 7644 7650 15132 15132 0.07536253945750104 HLAVNVNKGV 10 Unmodified _HLAVNVNKGV_ 0 0 0 HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 525.7731323242188 2 525.806365 1049.59818 -0.29207 -0.00015357 0.036746 1.9321E-05 -0.25533 -0.00013425 525.8062484751403 39.361 1.3208 42.739 42.296 43.617 3.3785 163 80 3 0 0 0 0.52083 1 7955 7955 9.3831 3.1773 1 276260 12190 8227 7644 7650 15133 15133 0.07536253945750104 HLAVNVNKGV 10 Unmodified _HLAVNVNKGV_ 0 0 0 HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense MSMS UPN47_class_I_Rep_3 4 525.8060302734375 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 40.237 1 43.474 42.974 43.974 3.2372 0 0 0 0.53105 1 8038 8038 9.3831 0.78985 1 12191 8227 7644 7650 15134 15134 0.07536253945750104 HLAVNVNKGV 10 Unmodified _HLAVNVNKGV_ 0 0 0 HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|57|3|sense MSMS UPN47_class_I_Rep_3 4 525.8057250976562 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 40.397 1 43.634 43.134 44.134 3.2372 0 0 0 0.53105 1 8086 8086 9.3831 0.78985 1 12192 8227 7644 7650 15135 15135 0.07536253945750104 HLDAELDAY 9 Unmodified _HLDAELDAY_ 0 0 0 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-SECPEP UPN47_class_I_Rep_1 2 523.2977905273438 2 523.743096 1045.47164 0.026336 1.3793E-05 -0.60286 -0.00031574 -0.57653 -0.00030195 523.7428717327205 45.072 0.57262 48.772 48.553 49.125 3.6999 53 33 2 0 0 0 0.11705 1 9457 9457 10.824 4.1008 1 82637 12193 3880 7645 7651 15136 15136 -0.04927717070063409 HLDAELDAY 9 Unmodified _HLDAELDAY_ 0 0 0 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-MSMS UPN47_class_I_Rep_2 3 524.2259521484375 2 523.743096 1045.47164 -0.17493 -9.1616E-05 -0.36189 -0.00018954 -0.53681 -0.00028115 523.7429043237744 45.409 0.55867 48.762 48.53 49.088 3.3534 51 33 2 0 0 0 0.13631 1 9575 9575 26.884 12.045 1 81783 12194 3880 7645 7651 15137 15137 -0.04927717070063409 HLDAELDAY 9 Unmodified _HLDAELDAY_ 0 0 0 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-SECPEP UPN47_class_I_Rep_3 4 523.297607421875 2 523.743096 1045.47164 0.14428 7.5567E-05 -0.70166 -0.00036749 -0.55738 -0.00029192 523.742661481742 45.563 0.67034 48.807 48.525 49.196 3.2441 57 41 2 0 0 0 0.11705 1 9668 9668 10.824 4.1008 1 97034 12195 3880 7645 7651 15138 15138 -0.04927717070063409 HLDATKLLL 9 Unmodified _HLDATKLLL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS UPN47_class_I_Rep_1 2 512.3134155273438 2 512.313492 1022.61243 0.18281 9.3658E-05 -0.29248 -0.00014984 -0.10966 -5.6181E-05 512.3134060671982 53.746 0.93441 57.273 56.861 57.795 3.5278 76 55 2 0 0 0 0.081756 2 12018 12018;12100 38.176 7.539 1 161010 12196 925 7646 7652 15139;15140 15139 0.10202906374036047 HLDATKLLL 9 Unmodified _HLDATKLLL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS UPN47_class_I_Rep_2 3 512.3131103515625 2 512.313492 1022.61243 0.19122 9.7965E-05 -0.57575 -0.00029496 -0.38453 -0.000197 512.3133528390848 53.999 1.0754 57.318 56.934 58.01 3.3187 84 60 2 0 0 0 0.073198 2 12150 12108;12150 40.239 2.2652 1 153210 12197 925 7646 7652 15141;15142 15142 0.10202906374036047 HLDATKLLL 9 Unmodified _HLDATKLLL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS UPN47_class_I_Rep_3 4 512.3133544921875 2 512.313492 1022.61243 0.28589 0.00014647 -0.81444 -0.00041725 -0.52855 -0.00027078 512.3131921843761 54.209 0.91269 57.394 56.996 57.909 3.1856 91 57 2 0 0 0 0.12096 2 12356 12315;12356 29.841 10.584 1 125400 12198 925 7646 7652 15143;15144 15144 0.10202906374036047 HLDEARTLL 9 Unmodified _HLDEARTLL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-SECPEP UPN47_class_I_Rep_2 3 534.3159790039062 2 534.29583 1066.57711 -0.05138 -2.7452E-05 0.80165 0.00042832 0.75027 0.00040087 534.2961372975525 39.098 0.94404 42.477 41.983 42.927 3.3785 89 56 2 0 0 0 0.11642 1 7736 7736 12.241 12.241 1 205980 12199 3712 7647 7653 15145 15145 0.04648243846236255 HLDEARTLL 9 Unmodified _HLDEARTLL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MATCH UPN47_class_I_Rep_1 2 2 534.29583 1066.57711 -0.046867 -2.5041E-05 0.9637 0.0005149 0.91683 0.00048986 534.296235882849 38.758 0.84005 42.423 41.92 42.76 3.6652 -0.067991 -3.0539E-05 NaN 12.241 95 55 2 NaN NaN NaN NaN 0 NaN NaN 0 167560 12200 3712 7647 7653 0.04648243846236255 HLDEARTLL 9 Unmodified _HLDEARTLL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MATCH UPN47_class_I_Rep_3 4 2 534.29583 1066.57711 -0.077509 -4.1413E-05 1.1535 0.00061633 1.076 0.00057492 534.2963053333754 39.336 0.87668 42.574 42.064 42.941 3.238 0.082622 0.00017233 NaN 12.241 123 59 3 NaN NaN NaN NaN 0 NaN NaN 0 153220 12201 3712 7647 7653 0.04648243846236255 HLDFCLHFI 9 Unmodified _HLDFCLHFI_ 0 0 0 L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|278|2|anti-sense L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|278|2|anti-sense L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|278|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 573.3304443359375 2 572.784044 1143.55354 0.45321 0.00025959 -1.1709 -0.00067066 -0.71768 -0.00041108 572.783261983663 89.193 0.25261 92.867 92.776 93.028 3.6738 34 26 3 0 0 0 0.12281 1 22320 22320 4.3292 0 1 188080 12202 14315 7648 7654 15146 15146 -0.012498931919481038 HLDFGSHSEF 10 Unmodified _HLDFGSHSEF_ 0 0 0 REV__L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|37|1|anti-sense REV__L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|37|1|anti-sense MSMS UPN47_class_I_Rep_3 4 588.2589111328125 2 588.259445 1174.50434 NaN NaN NaN NaN NaN NaN NaN 42.281 1 45.52 45.02 46.02 3.2394 0 0 0 0.53105 1 8661 8661 1.4819 0 1 + 12203 25983 7649 7655 15147 15147 -0.07593509947196253 HLDTLTEHY 9 Unmodified _HLDTLTEHY_ 0 0 0 nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A MULTI-MSMS UPN47_class_I_Rep_1 2 564.7697143554688 2 564.769645 1127.52474 -0.053599 -3.0271E-05 0.11302 6.3832E-05 0.059424 3.3561E-05 564.7696590841815 33.346 1.5731 37.045 36.678 38.251 3.6983 267 111 4 0 0 0 0.0028927 10 5929 5771;5813;5851;5891;5929;5968;6009;6047;6069;6114 180.01 142.04 1 792330 12204 1716 7650 7656 15148;15149;15150;15151;15152;15153;15154;15155;15156;15157 15152 -0.03392339287370305 HLDTLTEHY 9 Unmodified _HLDTLTEHY_ 0 0 0 nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A MULTI-MSMS UPN47_class_I_Rep_2 3 564.7698974609375 2 564.769645 1127.52474 0.045955 2.5954E-05 0.022052 1.2454E-05 0.068007 3.8408E-05 564.7696174711853 33.617 1.6751 37.057 36.664 38.339 3.4398 265 114 4 0 0 0 0.0055465 15 5917 5879;5917;5961;6001;6039;6076;6112;6149;6191;6228;6249;6297;6313;6356;6359 180.01 142.04 1 893030 12205 1716 7650 7656 15158;15159;15160;15161;15162;15163;15164;15165;15166;15167;15168;15169;15170;15171;15172 15159 -0.03392339287370305 HLDTLTEHY 9 Unmodified _HLDTLTEHY_ 0 0 0 nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A MULTI-MSMS UPN47_class_I_Rep_3 4 564.7696533203125 2 564.769645 1127.52474 -0.12591 -7.1108E-05 0.057954 3.2731E-05 -0.067953 -3.8378E-05 564.7696262640666 33.895 1.3246 37.17 36.8 38.124 3.2748 271 99 4 0 0 0 3.7413E-05 10 6117 5992;6037;6076;6117;6159;6204;6241;6288;6333;6372 180.01 142.04 1 715910 12206 1716 7650 7656 15173;15174;15175;15176;15177;15178;15179;15180;15181;15182 15176 -0.03392339287370305 HLDTLTEHY 9 Unmodified _HLDTLTEHY_ 0 0 0 nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A nc|ENSG00000105058|Q9Y421-3|FAM32A MSMS UPN47_class_I_Rep_3 4 564.7692260742188 2 564.769645 1127.52474 NaN NaN NaN NaN NaN NaN NaN 35.069 1 38.333 37.833 38.833 3.2639 0 0 0 0.28335 1 6451 6451 11.64 3.047 1 12207 1716 7650 7656 15183 15183 -0.03392339287370305 HLEKLARSP 9 Unmodified _HLEKLARSP_ 0 0 0 REV__ENST00000357066.7_1_19:2071060-2071678:-|nuORF REV__ENST00000357066.7_1_19:2071060-2071678:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 525.8052978515625 2 525.806365 1049.59818 -0.29207 -0.00015357 0.036746 1.9321E-05 -0.25533 -0.00013425 525.8062484751403 39.361 1.3208 42.739 42.296 43.617 3.3785 163 80 3 0 0 0 0.47197 1 7976 7976 3.5965 0 1 276260 + 12208 21874 7651 7657 15184 15184 0.07536253945750104 HLELAGVVI 9 Unmodified _HLELAGVVI_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS UPN47_class_I_Rep_3 4 475.7869873046875 2 475.78711 949.559667 0.063154 3.0048E-05 0.11012 5.2395E-05 0.17328 8.2443E-05 475.78707249551616 79.425 0.9068 82.72 82.309 83.216 3.295 176 85 3 0 0 0 0.46434 1 19982 19982 4.3292 0 1 324170 + 12209 18816 7652 7658 15185 15185 0.08286948311251763 HLEVPSPVV 9 Unmodified _HLEVPSPVV_ 0 0 0 REV__L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|103|1|anti-sense REV__L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|103|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 489.29052734375 2 488.776742 975.538931 -0.035211 -1.721E-05 0.63767 0.00031168 0.60246 0.00029447 488.7765838891668 48.796 0.53808 52.478 52.176 52.714 3.6819 49 34 2 0 0 0 0.12235 1 10469 10469 4.756 0 1 86547 + 12210 30633 7653 7659 15186 15186 0.05018357931578521 HLEVPSPVV 9 Unmodified _HLEVPSPVV_ 0 0 0 REV__L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|103|1|anti-sense REV__L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|103|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 488.776742 975.538931 0.22121 0.00010812 0.23549 0.0001151 0.4567 0.00022323 488.7765352541098 49.122 0.44543 52.469 52.28 52.725 3.3465 -0.0398 -8.9928E-05 NaN 4.756 39 30 2 NaN NaN NaN NaN 0 NaN NaN 0 83684 + 12211 30633 7653 7659 0.05018357931578521 HLEVPSPVV 9 Unmodified _HLEVPSPVV_ 0 0 0 REV__L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|103|1|anti-sense REV__L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|103|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 488.776742 975.538931 0.17913 8.7553E-05 0.18083 8.8384E-05 0.35995 0.00017594 488.77658052209694 49.345 0.52435 52.579 52.249 52.774 3.2345 0.070595 -0.00014336 NaN 4.756 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 84003 + 12212 30633 7653 7659 0.05018357931578521 HLFDSFHKPS 10 Unmodified _HLFDSFHKPS_ 0 0 0 REV__L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|96|3|anti-sense REV__L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|96|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 607.8016357421875 2 607.80128 1213.58801 0.42128 0.00025605 0.094452 5.7408E-05 0.51573 0.00031346 607.8012687423815 42.571 1.221 46.329 45.791 47.012 3.7579 303 107 4 0 0 0 0.52083 1 8008 8008 9.3831 2.66 1 903110 + 12213 27915 7654 7660 15187 15187 -0.01024353779462217 HLFFLRKLVH 10 Unmodified _HLFFLRKLVH_ 0 0 0 REV__L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|84|2|anti-sense REV__L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 437.26763916015625 3 437.267909 1308.7819 -0.32183 -0.00014072 -0.12059 -5.2729E-05 -0.44242 -0.00019345 437.2677418913459 50.525 1.103 53.868 53.31 54.413 3.3431 87 57 2 0 0 0 0.56433 1 11247 11247 0.77653 0.77653 1 106500 + 12214 27777 7655 7661 15188 15188 0.13985647447270821 HLFGGKKRRV 10 Unmodified _HLFGGKKRRV_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|12|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|12|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 599.3724975585938 2 599.369998 1196.72544 NaN NaN NaN NaN NaN NaN NaN 80.295 1 80.295 79.795 80.795 0 0 0 0 0.53105 1 18909 18909 1.4819 0.15237 1 12215 8550 7656 7662 15189 15189 0.1349501961058195 HLFHTVVVV 9 Unmodified _HLFHTVVVV_ 0 0 0 L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|51|3|sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|51|3|sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|51|3|sense MSMS UPN47_class_I_Rep_1 2 525.8056640625 2 525.808377 1049.6022 NaN NaN NaN NaN NaN NaN NaN 39.876 1 43.543 43.043 44.043 3.6668 0 0 0 0.38478 1 7846 7846 4.3292 0 1 12216 12275 7657 7663 15190 15190 0.07938343439468554 HLFILLLKH 9 Unmodified _HLFILLLKH_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|56|2|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|56|2|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.3634033203125 2 567.363319 1132.71209 0.3159 0.00017923 0.63723 0.00036154 0.95313 0.00054077 567.3636239442395 46.945 0.82061 50.189 49.629 50.449 3.2439 78 53 2 0 0 0 0.48414 1 10056 10056 2.3027 1.7012 1 113550 12217 13420 7658 7664 15191 15191 0.15103768778658377 HLFKQKKP 8 Unmodified _HLFKQKKP_ 0 0 0 L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|69|1|anti-sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|69|1|anti-sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|69|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.3162841796875 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 46.162 1 49.682 49.182 50.182 3.5192 0 0 0 0.40625 1 8983 8983 2.3027 0 1 12218 8626 7659 7665 15192 15192 0.10686049676382936 HLFLLGHR 8 Unmodified _HLFLLGHR_ 0 0 0 REV__ENST00000454229.1_1_2:6636110-6636479:-|nuORF REV__ENST00000454229.1_1_2:6636110-6636479:-|nuORF MSMS UPN46_class_I_Rep_3 1 496.8521728515625 2 496.793061 991.571569 NaN NaN NaN NaN NaN NaN NaN 79.85 1 79.85 79.35 80.35 0 0 0 0 0.40738 1 18779 18779 0.79363 0 1 + 12219 20414 7660 7666 15193 15193 0.07544609845103878 HLFLWWAF 8 Unmodified _HLFLWWAF_ 0 0 0 REV__L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|333|3|anti-sense REV__L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|333|3|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2930297851562 2 560.292362 1118.57017 NaN NaN NaN NaN NaN NaN NaN 42.158 1 45.519 45.019 46.019 3.3611 0 0 0 0.4032 1 8568 8568 6.3541 0 1 + 12220 29581 7661 7667 15194 15194 0.015629757563146995 HLFQFFSY 8 Unmodified _HLFQFFSY_ 0 0 0 REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|164|3|anti-sense REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|164|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.7642211914062 2 544.763635 1087.51272 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.23 117.73 118.73 3.6511 0 0 0 0.40604 1 27247 27247 2.5775 0 1 + 12221 23473 7662 7668 15195 15195 -0.02753911239892659 HLFWPWVF 8 Unmodified _HLFWPWVF_ 0 0 0 REV__Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense REV__Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense MSMS UPN47_class_I_Rep_1 2 566.2931518554688 2 566.292362 1130.57017 NaN NaN NaN NaN NaN NaN NaN 28.794 1 32.56 32.06 33.06 3.7662 0 0 0 0.40738 1 4485 4485 0.79363 0 1 + 12222 17361 7663 7669 15196 15196 0.010109757563213861 HLFWPWVF 8 Unmodified _HLFWPWVF_ 0 0 0 REV__Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense REV__Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 566.2930297851562 2 566.292362 1130.57017 NaN NaN NaN NaN NaN NaN NaN 28.55 1 32.292 31.792 32.792 3.7424 0 0 0 0.40738 1 3897 3897 0.79363 0 1 + 12223 17361 7663 7669 15197 15197 0.010109757563213861 HLFYCVFKSYF 11 Unmodified _HLFYCVFKSYF_ 0 0 0 L1M4_dup93|chr1:24433782-24434901:+|1.2824374332294577|0.1765210307456759|2.86|151.0|75|3|anti-sense L1M4_dup93|chr1:24433782-24434901:+|1.2824374332294577|0.1765210307456759|2.86|151.0|75|3|anti-sense L1M4_dup93|chr1:24433782-24434901:+|1.2824374332294577|0.1765210307456759|2.86|151.0|75|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 485.23712158203125 3 485.237286 1452.69003 -0.16709 -8.1081E-05 -0.87898 -0.00042651 -1.0461 -0.00050759 485.2366041603754 33.177 0.80582 36.632 36.33 37.136 3.4547 97 61 2 0 0 0 0.66092 1 5996 5996 2.2527 0.34635 1 159870 12224 8923 7664 7670 15198 15198 -0.018208237520866533 HLGAYIYY 8 Unmodified _HLGAYIYY_ 0 0 0 REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF MSMS UPN46_class_I_Rep_3 1 500.24737548828125 2 500.25036 998.486168 NaN NaN NaN NaN NaN NaN NaN 32.477 1 32.477 31.977 32.977 0 0 0 0 0.4032 1 5561 5561 6.3541 0.14832 1 + 12225 17817 7665 7671 15199 15199 -0.0131360013124322 HLGETDVVI 9 Unmodified _HLGETDVVI_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.7634582519531 2 491.763832 981.513111 0.16413 8.0715E-05 -0.42412 -0.00020857 -0.25999 -0.00012785 491.76350549028245 44.589 0.65582 48.102 47.848 48.503 3.5132 59 45 2 0 0 0 0.42249 1 8478 8478 6.7232 2.1943 1 190250 12226 12672 7666 7672 15200 15200 0.02161463689287757 HLGETDVVI 9 Unmodified _HLGETDVVI_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.7640686035156 2 491.763832 981.513111 0.18814 9.2521E-05 -0.15194 -7.4718E-05 0.036201 1.7802E-05 491.76371394710225 44.33 0.64513 48.092 47.817 48.462 3.7617 81 46 2 0 0 0 0.33654 1 8424 8424 11.64 0 1 232050 12227 12672 7666 7672 15201 15201 0.02161463689287757 HLGETDVVI 9 Unmodified _HLGETDVVI_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|124|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.76385498046875 2 491.763832 981.513111 0.16213 7.973E-05 -0.36199 -0.00017801 -0.19986 -9.8285E-05 491.7635918057994 44.514 0.62819 48.151 47.84 48.469 3.6372 78 45 2 0 0 0 0.41259 1 8351 8351 7.2892 0 1 202970 12228 12672 7666 7672 15202 15202 0.02161463689287757 HLGGCLYEEL 10 Unmodified _HLGGCLYEEL_ 0 0 0 REV__L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|350|3|anti-sense REV__L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|350|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.26806640625 2 567.268424 1132.5223 0.39053 0.00022154 -0.53637 -0.00030426 -0.14584 -8.2728E-05 567.2679339720669 49.075 0.73073 52.422 51.885 52.616 3.3465 60 44 2 0 0 0 0.56078 1 10536 10536 3.2813 0 1 109620 + 12229 29937 7667 7673 15203 15203 -0.03866511016713048 HLGIRRNPVR 10 Unmodified _HLGIRRNPVR_ 0 0 0 Tigger4_dup177|chr2:63244940-63247760:+|1.0649315729304478|0.0349077574360848|4.93|149.0|128|2|anti-sense Tigger4_dup177|chr2:63244940-63247760:+|1.0649315729304478|0.0349077574360848|4.93|149.0|128|2|anti-sense Tigger4_dup177|chr2:63244940-63247760:+|1.0649315729304478|0.0349077574360848|4.93|149.0|128|2|anti-sense MSMS UPN48_class_I_Rep_2 6 406.58416748046875 3 406.582779 1216.72651 NaN NaN NaN NaN NaN NaN NaN 104.5 1 108.2 107.7 108.7 3.6991 0 0 0 0.53105 1 24731 24731 1.9064 0.1641 1 12230 33419 7668 7674 15204 15204 0.1268123397949239 HLGISIASLL 10 Unmodified _HLGISIASLL_ 0 0 0 HAL1_dup929|chr1:120946109-120946473:-|1.09589327147235|0.0193368288209813|5.82|151.0|16|1|anti-sense HAL1_dup929|chr1:120946109-120946473:-|1.09589327147235|0.0193368288209813|5.82|151.0|16|1|anti-sense HAL1_dup929|chr1:120946109-120946473:-|1.09589327147235|0.0193368288209813|5.82|151.0|16|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.313720703125 2 512.313492 1022.61243 0.28589 0.00014647 -0.81444 -0.00041725 -0.52855 -0.00027078 512.3131921843761 54.209 0.91269 57.394 56.996 57.909 3.1856 91 57 2 0 0 0 0.51565 1 12406 12406 10.074 0 1 125400 12231 7921 7669 7675 15205 15205 0.10202906374036047 HLGPEGRSV 9 Unmodified _HLGPEGRSV_ 0 0 0 nc|ENSG00000291317|P0DTL5|TMEM276 nc|ENSG00000291317|P0DTL5|TMEM276 nc|ENSG00000291317|P0DTL5|TMEM276 MULTI-MSMS UPN46_class_I_Rep_3 1 476.3265686035156 2 476.253966 950.493378 -0.10031 -4.7772E-05 -0.76709 -0.00036533 -0.8674 -0.0004131 476.2533733696612 25.603 0.64455 25.603 25.373 26.018 0 84 57 2 0 0 0 0.37599 1 3632 3632 9.3831 0.035688 1 78251 12232 16857 7670 7676 15206 15206 0.01615132469191849 HLGQFFGHW 9 Unmodified _HLGQFFGHW_ 0 0 0 HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|233|2|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|233|2|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|233|2|anti-sense MSMS UPN47_class_I_Rep_1 2 564.7704467773438 2 564.772326 1127.5301 NaN NaN NaN NaN NaN NaN NaN 35.408 1 39.084 38.584 39.584 3.6762 0 0 0 0.38299 1 6489 6489 4.756 0.81161 1 12233 8253 7671 7677 15207 15207 -0.028565709142412743 HLGRNNLF 8 Unmodified _HLGRNNLF_ 0 0 0 L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|38|2|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|38|2|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|38|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 485.23712158203125 2 485.764501 969.514448 -0.16055 -7.7992E-05 -1.2435 -0.00060406 -1.4041 -0.00068206 485.76208234172304 33.67 0.037491 37.11 37.084 37.121 3.4398 4 2 2 0 0 0 0.72333 1 5996 5996 2.8892 0 1 13470 12234 9873 7672 7678 15208 15208 0.028471425687030205 HLGYVVYS 8 Unmodified _HLGYVVYS_ 0 0 0 nc|ENSG00000086200|Q9UI26-2|IPO11 nc|ENSG00000086200|Q9UI26-2|IPO11 nc|ENSG00000086200|Q9UI26-2|IPO11 MSMS UPN48_class_I_Rep_1 5 469.2710266113281 2 469.242535 936.470518 NaN NaN NaN NaN NaN NaN NaN 33.632 1 37.152 36.652 37.652 3.5201 0 0 0 0.40604 1 5273 5273 2.5775 0 1 12235 16640 7673 7679 15209 15209 -0.0002588664827953835 HLHFHEIR 8 Unmodified _HLHFHEIR_ 0 0 0 REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|160|3|anti-sense REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|160|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.791015625 2 544.79105 1087.56755 NaN NaN NaN NaN NaN NaN NaN 24.962 1 28.731 28.231 29.231 3.769 0 0 0 0.40738 1 2969 2969 0.79363 0 1 + 12236 32649 7674 7680 15210 15210 0.02726520351347972 HLHGPHPL 8 Unmodified _HLHGPHPL_ 0 0 0 REV__ENST00000265593.8_1_3:184072421-184073273:-|nuORF REV__ENST00000265593.8_1_3:184072421-184073273:-|nuORF MSMS UPN47_class_I_Rep_1 2 454.2489929199219 2 454.248486 906.48242 NaN NaN NaN NaN NaN NaN NaN 34.709 1 38.394 37.894 38.894 3.6859 0 0 0 0.40738 1 6280 6280 0.79363 0 1 + 12237 21593 7675 7681 15211 15211 0.02543774885566563 HLHGVPMK 8 Unmodified _HLHGVPMK_ 0 0 0 REV__L1MB3_dup2397|chr2:161186442-161187145:+|1.943087020044633|0.0738173335915886|4.72|151.0|36|2|anti-sense REV__L1MB3_dup2397|chr2:161186442-161187145:+|1.943087020044633|0.0738173335915886|4.72|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 459.75042724609375 2 459.752547 917.490542 -0.66394 -0.00030525 -0.26672 -0.00012262 -0.93065 -0.00042787 459.7518794344643 36.803 0.59815 40.05 39.713 40.311 3.247 60 42 2 0 0 0 0.82752 1 6953 6953 0.79363 0.10326 1 54305 + 12238 25864 7676 7682 15212 15212 0.028495858106794003 HLHIHHVI 8 Unmodified _HLHIHHVI_ 0 0 0 ENST00000489490.1_1_2:102441786-102446061:+|nuORF;ENST00000476609.1_1_2:102441885-102476398:+|nuORF;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4 ENST00000489490.1_1_2:102441786-102446061:+|nuORF ENST00000489490.1_1_2:102441786-102446061:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 503.7638244628906 2 503.290685 1004.56682 0.22125 0.00011135 -1.6784 -0.00084471 -1.4571 -0.00073336 503.2893594525774 50.819 0.33879 54.158 53.922 54.261 3.3386 24 18 2 0 0 0 0.72333 1 11169 11169 6.3541 0 1 37863 12239 1082 7677 7683 15213 15213 0.0647172570230623 HLHRVNIY 8 Unmodified _HLHRVNIY_ 0 0 0 REV__L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|16|1|sense REV__L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 526.29296875 2 526.293425 1050.5723 0.18005 9.4761E-05 -1.5624 -0.00082228 -1.3823 -0.00072752 526.2927315601759 46.012 0.47789 49.256 48.903 49.381 3.2441 47 26 2 0 0 0 0.82752 1 9772 9772 13.508 0.46542 1 81237 + 12240 27843 7678 7684 15214 15214 0.04903404494143615 HLHSTGNDGRI 11 Unmodified _HLHSTGNDGRI_ 0 0 0 LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|22|1|anti-sense LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|22|1|anti-sense LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_1 5 603.8029174804688 2 603.802343 1205.59013 NaN NaN NaN NaN NaN NaN NaN 40.857 1 44.363 43.863 44.863 3.506 0 0 0 0.38417 1 7378 7378 1.0715 0 1 12241 15637 7679 7685 15215 15215 -0.004439250416453433 HLHVRGWGG 9 Unmodified _HLHVRGWGG_ 0 0 0 HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|43|2|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|43|2|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|43|2|sense MSMS UPN47_class_I_Rep_1 2 509.7698059082031 2 509.770117 1017.52568 NaN NaN NaN NaN NaN NaN NaN 14.538 1 18.013 17.513 18.513 3.475 0 0 0 0.4029 1 588 588 0 0 1 12242 8267 7680 7686 15216 15216 0.01761964662864557 HLHVRVGR 8 Unmodified _HLHVRVGR_ 0 0 0 REV__ENST00000258111.4_1_12:70760360-70760789:+|nuORF REV__ENST00000258111.4_1_12:70760360-70760789:+|nuORF MSMS UPN48_class_I_Rep_3 7 487.62744140625 2 487.293759 972.572966 NaN NaN NaN NaN NaN NaN NaN 95.206 1 99.108 98.608 99.608 3.9016 0 0 0 0.40625 1 22567 22567 2.3027 0 1 + 12243 21541 7681 7687 15217 15217 0.08558243933850918 HLHWNRHWYPW 11 Unmodified _HLHWNRHWYPW_ 0 0 0 L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 544.5970458984375 3 544.597088 1630.76943 0.55722 0.00030346 0.24633 0.00013415 0.80355 0.00043761 544.9318300493752 15.345 0.7231 18.863 18.493 19.216 3.5184 138 96 2 0 0 0 0.68583 1 551 551 0 0 1 80593 12244 15033 7682 7688 15218 15218 -0.02071995963046902 HLHWNRHWYPW 11 Unmodified _HLHWNRHWYPW_ 0 0 0 L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 544.597088 1630.76943 0.36631 0.00019949 0.058061 3.162E-05 0.42437 0.00023111 544.5969691772731 15.507 0.32599 19.046 18.92 19.246 3.5392 0.092799 -3.065E-05 NaN 0 71 43 2 NaN NaN NaN NaN 0 NaN NaN 0 29021 12245 15033 7682 7688 -0.02071995963046902 HLHWNRRWYPW 11 Unmodified _HLHWNRRWYPW_ 0 0 0 L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 550.9459228515625 3 550.944488 1649.81163 NaN NaN NaN NaN NaN NaN NaN 37.487 1 37.487 36.987 37.987 0 0 0 0 0.38417 1 7054 7054 0.094841 0 1 12246 15400 7683 7689 15219 15219 0.01271979445323268 HLHWPYKF 8 Unmodified _HLHWPYKF_ 0 0 0 REV__L1MD1_dup6374|chr20:3970958-3972618:+|6.388695530239721|0.022213842068228|8.17|151.0|19|1|sense REV__L1MD1_dup6374|chr20:3970958-3972618:+|6.388695530239721|0.022213842068228|8.17|151.0|19|1|sense MSMS UPN48_class_I_Rep_3 7 564.29541015625 2 564.292894 1126.57123 NaN NaN NaN NaN NaN NaN NaN 23.69 1 27.459 26.959 27.959 3.769 0 0 0 0.40738 1 2637 2637 0.79363 0.10326 1 + 12247 27366 7684 7690 15220 15220 0.013011901252184543 HLIAVTDLVI 10 Unmodified _HLIAVTDLVI_ 0 0 0 REV__L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|124|3|anti-sense REV__L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|124|3|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3333129882812 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 69.1 1 72.468 71.968 72.968 3.3678 0 0 0 0.53105 1 16724 16724 3.9444 0 1 + 12248 26037 7685 7691 15221 15221 0.11167462062576305 HLIEASFS 8 Unmodified _HLIEASFS_ 0 0 0 REV__L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|28|2|anti-sense REV__L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|28|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2318420410156 2 452.232168 902.449782 0.11733 5.3062E-05 0.058983 2.6674E-05 0.17632 7.9736E-05 452.2321441335693 61.262 0.58173 61.262 60.959 61.541 0 104 66 2 0 0 0 0.82752 1 13700 13700 2.3027 0 1 300390 + 12249 28340 7686 7692 15222 15222 -0.005344770279407385 HLIETKPL 8 Unmodified _HLIETKPL_ 0 0 0 REV__L1MCc_dup2282|chr10:75552103-75553551:-|2.1861830994406533|0.0097097428645002|7.81|149.0|22|2|sense REV__L1MCc_dup2282|chr10:75552103-75553551:-|2.1861830994406533|0.0097097428645002|7.81|149.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 475.786865234375 2 475.78711 949.559667 0.14542 6.919E-05 -0.18479 -8.792E-05 -0.039365 -1.8729E-05 475.78696237746044 79.128 0.48064 82.574 82.344 82.824 3.4456 62 40 2 0 0 0 0.82752 1 19686 19686 4.3292 0 1 1140700 + 12250 27243 7687 7693 15223 15223 0.08286948311229025 HLIHRNKQ 8 Unmodified _HLIHRNKQ_ 0 0 0 HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3037109375 2 523.304324 1044.5941 0.3298 0.00017259 -1.6044 -0.00083958 -1.2746 -0.00066699 523.3033631033591 85.844 0.14314 85.844 85.773 85.916 0 21 14 2 0 0 0 0.82752 1 20506 20506 0.79363 0 1 123530 12251 8457 7688 7694 15224 15224 0.07358209242693192 HLIHRNKQ 8 Unmodified _HLIHRNKQ_ 0 0 0 HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.304324 1044.5941 0.1095 5.7301E-05 -1.2976 -0.00067903 -1.1881 -0.00062173 523.3035104893729 82.419 0.053711 85.818 85.771 85.825 3.3984 -0.028078 0.00025272 NaN 0.79363 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 47653 12252 8457 7688 7694 0.07358209242693192 HLIHRNKQ 8 Unmodified _HLIHRNKQ_ 0 0 0 HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense HUERS-P3b-int_dup194|chr7:43666199-43669213:+|2.1474680356215754|0.1425024460750829|3.91|151.0|114|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 523.304324 1044.5941 0.45091 0.00023596 -1.6767 -0.00087744 -1.2258 -0.00064148 523.3031036468758 82.191 0.035446 85.876 85.857 85.893 3.685 0.030267 -0.00014411 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 35486 12253 8457 7688 7694 0.07358209242693192 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 625.432373046875 2 625.432599 1248.85064 0.55482 0.000347 -0.96574 -0.00060401 -0.41092 -0.00025701 625.4319282038017 108.25 0.26833 111.88 111.86 112.13 3.6355 49 26 2 0 0 0 0.56478 1 26602 26602 0.45834 0 1 3065000 + 12254 24333 7689 7695 15225 15225 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 625.431640625 2 625.432599 1248.85064 0.63449 0.00039683 -1.0321 -0.00064551 -0.39761 -0.00024868 625.4318963737261 108.08 0.31668 111.61 111.36 111.67 3.5333 44 37 2 0 0 0 0.56478 2 26163 26163;26170 0.45834 0 1 6148000 + 12255 24333 7689 7695 15226;15227 15226 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 625.9343872070312 2 625.432599 1248.85064 0.63454 0.00039686 -1.2173 -0.00076133 -0.58275 -0.00036447 625.4316825485332 108.22 0.22649 111.75 111.66 111.89 3.5333 34 20 2 0 0 0 0.56478 1 26254 26254 0.45834 0 1 3868500 + 12256 24333 7689 7695 15228 15228 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 625.43212890625 2 625.432599 1248.85064 0.49435 0.00030918 -1.2561 -0.00078558 -0.76172 -0.0004764 625.431796301842 108 0.11688 111.67 111.59 111.71 3.6746 18 10 2 0 0 0 0.56478 1 25563 25563 0.45834 0 1 6089600 + 12257 24333 7689 7695 15229 15229 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 625.4323120117188 2 625.432599 1248.85064 0.59793 0.00037397 -0.84454 -0.0005282 -0.24661 -0.00015424 625.4319369011978 107.93 0.06015 111.61 111.6 111.66 3.6813 21 7 3 0 0 0 0.56478 1 25508 25508 0.45834 0 1 6029800 + 12258 24333 7689 7695 15230 15230 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 625.4322509765625 2 625.432599 1248.85064 0.59777 0.00037387 -0.76685 -0.00047961 -0.16908 -0.00010575 625.4320021407028 108.16 0.11739 111.84 111.76 111.88 3.6813 22 8 3 0 0 0 0.56478 1 25555 25555 0.45834 0 1 8421200 + 12259 24333 7689 7695 15231 15231 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 625.432599 1248.85064 0.42744 0.00026734 -0.97409 -0.00060923 -0.54665 -0.00034189 625.4318346700613 108.07 0.46317 111.7 111.44 111.91 3.6313 -0.086915 1.8295E-05 NaN 0.45834 100 38 3 NaN NaN NaN NaN 0 NaN NaN 0 6560500 + 12260 24333 7689 7695 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 625.432599 1248.85064 0.49435 0.00030918 -1.2561 -0.00078558 -0.76172 -0.0004764 625.431796301842 108 0.11688 111.67 111.59 111.71 3.6746 0.081496 -0.00026028 NaN 0.45834 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 6089600 + 12261 24333 7689 7695 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 625.432599 1248.85064 0.49458 0.00030933 -0.90723 -0.00056741 -0.41265 -0.00025808 625.4319193746336 108.16 0.42693 111.84 111.72 112.15 3.6746 0.051879 0.00010192 NaN 0.45834 126 48 4 NaN NaN NaN NaN 0 NaN NaN 0 9183000 + 12262 24333 7689 7695 0.23617311746966152 HLIKKRKKKA 10 Unmodified _HLIKKRKKKA_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|116|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 625.432599 1248.85064 0.59788 0.00037393 -1.0946 -0.00068459 -0.4967 -0.00031066 625.4317941130391 108.06 0.080879 111.74 111.67 111.75 3.6813 -0.043132 -0.00013243 NaN 0.45834 24 7 4 NaN NaN NaN NaN 0 NaN NaN 0 6378700 + 12263 24333 7689 7695 0.23617311746966152 HLIKKWKKIK 10 Unmodified _HLIKKWKKIK_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense MSMS UPN47_class_I_Rep_1 2 441.2974548339844 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 60.886 1 64.268 63.768 64.768 3.3815 0 0 0 0.53105 1 14238 14238 0.15932 0.064481 1 + 12264 24874 7690 7696 15232 15232 0.22819366549538245 HLIKKWKKIK 10 Unmodified _HLIKKWKKIK_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense MSMS UPN47_class_I_Rep_2 3 441.2976989746094 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 56.939 1 60.24 59.74 60.74 3.3009 0 0 0 0.53105 1 13073 13073 0.15932 0.064481 1 + 12265 24874 7690 7696 15233 15233 0.22819366549538245 HLIKKWKKIK 10 Unmodified _HLIKKWKKIK_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense MSMS UPN47_class_I_Rep_3 4 441.2977294921875 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 61.071 1 64.236 63.736 64.736 3.1651 0 0 0 0.53105 1 14382 14382 0.15932 0.064481 1 + 12266 24874 7690 7696 15234 15234 0.22819366549538245 HLIKKWKKIK 10 Unmodified _HLIKKWKKIK_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense MSMS UPN47_class_I_Rep_3 4 441.2969970703125 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 61.831 1 64.998 64.498 65.498 3.1667 0 0 0 0.53105 1 14615 14615 0.15932 0.064481 1 + 12267 24874 7690 7696 15235 15235 0.22819366549538245 HLIKKWKKIK 10 Unmodified _HLIKKWKKIK_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|128|3|sense MSMS UPN47_class_I_Rep_3 4 441.2974548339844 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 64.582 1 67.756 67.256 68.256 3.1741 0 0 0 0.53105 1 15455 15455 0.15932 0.064481 1 + 12268 24874 7690 7696 15236 15236 0.22819366549538245 HLISMCEDHD 10 Unmodified _HLISMCEDHD_ 0 0 0 ENSG00000159921.19,GNE,chr9,-,I6.1,36234133,36236831|40|5.9|1|intron;ENSG00000159921.19,GNE,chr9,-,I6.1,36234133,36236831|40|5.9|2|intron;nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE ENSG00000159921.19,GNE,chr9,-,I6.1,36234133,36236831|40|5.9|1|intron ENSG00000159921.19,GNE,chr9,-,I6.1,36234133,36236831|40|5.9|1|intron MSMS UPN47_class_I_Rep_2 3 600.6500854492188 2 600.244623 1198.47469 NaN NaN NaN NaN NaN NaN NaN 118.88 1 122.35 121.85 122.85 3.4793 0 0 0 0.53105 1 29101 29101 1.6526 0 1 12269 3849 7691 7697 15237 15237 -0.11660533279200536 HLITLKLKAKV 11 Unmodified _HLITLKLKAKV_ 0 0 0 ENSG00000115392.12,FANCL,chr2,-,I9.1,58165875,58194228|34|8.85|3|intron ENSG00000115392.12,FANCL,chr2,-,I9.1,58165875,58194228|34|8.85|3|intron ENSG00000115392.12,FANCL,chr2,-,I9.1,58165875,58194228|34|8.85|3|intron MSMS UPN46_class_I_Rep_3 1 632.4298095703125 2 632.42919 1262.84383 NaN NaN NaN NaN NaN NaN NaN 107.98 1 107.98 107.48 108.48 0 0 0 0 0.38417 1 26358 26358 1.3295 0 1 12270 2126 7692 7698 15238 15238 0.22291954075717513 HLIVKVLQ 8 Unmodified _HLIVKVLQ_ 0 0 0 REV__L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|358|3|anti-sense REV__L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|358|3|anti-sense MSMS UPN46_class_I_Rep_3 1 475.3133239746094 2 475.313295 948.612037 NaN NaN NaN NaN NaN NaN NaN 21.362 1 21.362 20.862 21.862 0 0 0 0 0.40625 1 2377 2377 2.3027 0 1 + 12271 29827 7693 7699 15239 15239 0.1356753144484628 HLIYYEDF 8 Unmodified _HLIYYEDF_ 0 0 0 MLT1O_dup952|chr3:40494464-40494956:-|1.153159588736294|0.2090083416277137|2.46|151.0|30|3|anti-sense MLT1O_dup952|chr3:40494464-40494956:-|1.153159588736294|0.2090083416277137|2.46|151.0|30|3|anti-sense MLT1O_dup952|chr3:40494464-40494956:-|1.153159588736294|0.2090083416277137|2.46|151.0|30|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.25830078125 2 550.258382 1098.50221 NaN NaN NaN NaN NaN NaN NaN 72.522 1 72.522 72.022 73.022 0 0 0 0 0.40738 1 16768 16768 0.79363 0 1 12272 16495 7694 7700 15240 15240 -0.04309938685014458 HLKARIRAE 9 Unmodified _HLKARIRAE_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MSMS UPN47_class_I_Rep_3 4 547.33251953125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 90.316 1 93.714 93.214 94.214 3.3976 0 0 0 0.3967 1 22637 22637 1.4819 0.8804 1 12273 2802 7695 7701 15241 15241 0.10899051448268438 HLKEDQTEY 9 Unmodified _HLKEDQTEY_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN46_class_I_Rep_3 1 581.7727661132812 2 581.772385 1161.53022 0.10584 6.1575E-05 0.09831 5.7194E-05 0.20415 0.00011877 581.7723785423925 23.295 0.58212 23.295 23.005 23.587 0 69 51 2 0 0 0 0.279 1 2841 2841 15.248 3.6082 1 63008 12274 1207;1424;16849 7696 7702 15242 15242 -0.04408660495573713 HLKGFSLT 8 Unmodified _HLKGFSLT_ 0 0 0 MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.75799560546875 2 451.758352 901.502152 -0.36318 -0.00016407 -0.80265 -0.0003626 -1.1658 -0.00052667 451.7580736762621 35.045 0.52784 38.731 38.598 39.126 3.6859 50 36 2 0 0 0 0.82752 1 6380 6380 4.3292 0 1 69871 12275 16420 7697 7703 15243 15243 0.0474610610565378 HLKGFSLT 8 Unmodified _HLKGFSLT_ 0 0 0 MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.25933837890625 2 451.758352 901.502152 -0.53983 -0.00024387 -0.22309 -0.00010078 -0.76292 -0.00034465 451.75815341229946 35.455 0.54018 38.866 38.679 39.219 3.4114 42 33 2 0 0 0 0.82752 1 6531 6531 2.0598 0 1 37301 12276 16420 7697 7703 15244 15244 0.0474610610565378 HLKGFSLT 8 Unmodified _HLKGFSLT_ 0 0 0 MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 451.758352 901.502152 -0.36318 -0.00016407 -0.80265 -0.0003626 -1.1658 -0.00052667 451.7580736762621 35.045 0.52784 38.731 38.598 39.126 3.6859 -0.13882 -0.00023611 NaN 4.3292 50 36 2 NaN NaN NaN NaN 0 NaN NaN 0 69871 12277 16420 7697 7703 0.0474610610565378 HLKGFSLT 8 Unmodified _HLKGFSLT_ 0 0 0 MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|26|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 451.758352 901.502152 -0.7639 -0.0003451 -0.44171 -0.00019955 -1.2056 -0.00054464 451.758257406483 35.757 0.51682 39.012 38.825 39.342 3.2547 0.14217 9.0005E-05 NaN 4.3292 41 33 2 NaN NaN NaN NaN 0 NaN NaN 0 61580 12278 16420 7697 7703 0.0474610610565378 HLKKGHSL 8 Unmodified _HLKKGHSL_ 0 0 0 Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|87|1|anti-sense Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|87|1|anti-sense Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|87|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 460.78265380859375 2 460.277244 918.539935 0.043347 1.9952E-05 3.1178 0.001435 3.1611 0.001455 460.2756856519293 109.23 0.27962 112.86 112.71 112.99 3.6321 74 34 4 0 0 0 0.82752 1 26519 26519 5.2307 0 1 12612000 12279 33171 7698 7704 15245 15245 0.07740617091144486 HLKKHIHH 8 Unmodified _HLKKHIHH_ 0 0 0 L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|107|2|sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|107|2|sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|107|2|sense MSMS UPN48_class_I_Rep_2 6 525.3092651367188 2 525.30941 1048.60427 NaN NaN NaN NaN NaN NaN NaN 36.122 1 39.809 39.309 40.309 3.6877 0 0 0 0.40738 1 6037 6037 0.79363 0 1 12280 14598 7699 7705 15246 15246 0.08190816967930914 HLKKHRWYKKI 11 Unmodified _HLKKHRWYKKI_ 0 0 0 ENST00000565049.1_1_16:33499109-33500962:-|nuORF ENST00000565049.1_1_16:33499109-33500962:-|nuORF ENST00000565049.1_1_16:33499109-33500962:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 512.3136596679688 3 512.98065 1535.92012 0.23447 0.00012028 3.7391 0.0019181 3.9735 0.0020383 513.3173822753624 46.942 0.14214 50.579 50.493 50.635 3.6363 11 9 2 0 0 0 22.551 1 9171 9171 0.094841 0 1 84629 12281 7482 7700 7706 15247 15247 0.17359770695725274 HLKKLLYLLIY 11 Unmodified _HLKKLLYLLIY_ 0 0 0 Tigger1_dup8687|chr11:74996153-74997564:-|3.002289149658876|0.344720156989216|3.12|151.0|50|1|anti-sense Tigger1_dup8687|chr11:74996153-74997564:-|3.002289149658876|0.344720156989216|3.12|151.0|50|1|anti-sense Tigger1_dup8687|chr11:74996153-74997564:-|3.002289149658876|0.344720156989216|3.12|151.0|50|1|anti-sense MSMS UPN46_class_I_Rep_3 1 472.97119140625 3 472.970758 1415.89044 NaN NaN NaN NaN NaN NaN NaN 57.412 1 57.412 56.912 57.912 0 0 0 0 0.38417 1 12578 12578 0.50596 0.051438 1 12282 33203 7701 7707 15248 15248 0.199133939070407 HLKPDLASLL 10 Unmodified _HLKPDLASLL_ 0 0 0 REV__ENSG00000204657|ENST00000641840|OR2H2 REV__ENSG00000204657|ENST00000641840|OR2H2 MSMS UPN46_class_I_Rep_3 1 553.8309936523438 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 88.11 1 88.11 87.61 88.61 0 0 0 0 0.53105 1 21144 21144 1.3295 0.63916 1 + 12283 21204 7702 7708 15249 15249 0.10094577919812764 HLKRPRKKKM 10 Unmodified _HLKRPRKKKM_ 0 0 0 REV__L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|32|2|sense REV__L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|32|2|sense MSMS UPN46_class_I_Rep_3 1 441.29754638671875 3 441.283564 1320.82886 NaN NaN NaN NaN NaN NaN NaN 91.809 1 91.809 91.309 92.309 0 0 0 0 0.53105 1 22191 22191 0.15932 0.064481 1 + 12284 26451 7703 7709 15250 15250 0.18128183726753377 HLKTIRAIY 9 Unmodified _HLKTIRAIY_ 0 0 0 L1PA5_dup3555|chr5:43438835-43443391:-|1.4495344463682591|0.155645248031579|3.22|151.0|16|1|sense L1PA5_dup3555|chr5:43438835-43443391:-|1.4495344463682591|0.155645248031579|3.22|151.0|16|1|sense L1PA5_dup3555|chr5:43438835-43443391:-|1.4495344463682591|0.155645248031579|3.22|151.0|16|1|sense MSMS UPN47_class_I_Rep_1 2 558.2650146484375 2 557.840208 1113.66586 NaN NaN NaN NaN NaN NaN NaN 41.829 1 45.508 45.008 46.008 3.6792 0 0 0 0.39326 1 8440 8440 2.3027 0 1 12285 14464 7704 7710 15251 15251 0.11357703876569758 HLKTKSSVS 9 Unmodified _HLKTKSSVS_ 0 0 0 REV__L1PB1_dup696|chr1:213197741-213198586:-|1.018673371019155|0.0116415871552006|6.45|150.0|16|2|sense REV__L1PB1_dup696|chr1:213197741-213198586:-|1.018673371019155|0.0116415871552006|6.45|150.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 493.7859802246094 2 493.785099 985.555644 NaN NaN NaN NaN NaN NaN NaN 109.4 1 113.08 112.58 113.58 3.6751 0 0 0 0.36505 1 25977 25977 7.2892 1.0834 1 + 12286 30475 7705 7711 15252 15252 0.06228858817530636 HLKWKKYHRK 10 Unmodified _HLKWKKYHRK_ 0 0 0 REV__L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|19|2|sense REV__L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 475.3135681152344 3 475.285962 1422.83606 NaN NaN NaN NaN NaN NaN NaN 20.757 1 20.757 20.257 21.257 0 0 0 0 0.53105 1 2211 2211 0.15932 0.01943 1 + 12287 28582 7706 7712 15253 15253 0.14155239598790104 HLLAAGRLLPP 11 Unmodified _HLLAAGRLLPP_ 0 0 0 ENST00000532739.1_1_16:16453883-16454575:+|nuORF ENST00000532739.1_1_16:16453883-16454575:+|nuORF ENST00000532739.1_1_16:16453883-16454575:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 579.3614501953125 2 579.361308 1156.70806 0.50792 0.00029427 0.73537 0.00042604 1.2433 0.00072031 579.3615986904713 108.85 0.94095 108.85 108.69 109.63 0 140 72 4 0 0 0 0.4608 2 26730 26730;26783 8.7454 2.0222 1 44688000 12288 7303 7707 7713 15254;15255 15254 0.13597679284930564 HLLAAGRLLPP 11 Unmodified _HLLAAGRLLPP_ 0 0 0 ENST00000532739.1_1_16:16453883-16454575:+|nuORF ENST00000532739.1_1_16:16453883-16454575:+|nuORF ENST00000532739.1_1_16:16453883-16454575:+|nuORF MSMS UPN48_class_I_Rep_1 5 579.364501953125 2 579.361308 1156.70806 NaN NaN NaN NaN NaN NaN NaN 109.23 1 112.86 112.36 113.36 3.6321 0 0 0 0.38417 1 26515 26515 5.2969 1.3525 1 12289 7303 7707 7713 15256 15256 0.13597679284930564 HLLAAGRLLPP 11 Unmodified _HLLAAGRLLPP_ 0 0 0 ENST00000532739.1_1_16:16453883-16454575:+|nuORF ENST00000532739.1_1_16:16453883-16454575:+|nuORF ENST00000532739.1_1_16:16453883-16454575:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 579.3624267578125 2 579.361308 1156.70806 0.4854 0.00028122 0.3998 0.00023163 0.8852 0.00051285 579.3614379114558 108.66 0.40789 112.34 112.24 112.65 3.6751 104 45 3 0 0 0 0.4608 1 25713 25713 8.7454 2.5396 1 48441000 12290 7303 7707 7713 15257 15257 0.13597679284930564 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 MULTI-MSMS UPN47_class_I_Rep_1 2 563.8101196289062 2 563.810782 1125.60701 0.34321 0.00019351 0.11488 6.4772E-05 0.45809 0.00025828 563.8107429602311 66.67 0.72929 70.028 69.728 70.457 3.3576 70 51 2 0 0 0 0.33654 2 15944 15944;15990 11.64 3.4848 1 102770 12291 1008 7708 7714 15258;15259 15258 0.04923182791549152 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 MSMS UPN47_class_I_Rep_2 3 563.811279296875 2 563.810782 1125.60701 NaN NaN NaN NaN NaN NaN NaN 67.181 1 70.445 69.945 70.945 3.2636 0 0 0 0.28335 1 16187 16187 11.64 0 1 12292 1008 7708 7714 15260 15260 0.04923182791549152 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 MSMS UPN47_class_I_Rep_2 3 563.8102416992188 2 563.810782 1125.60701 NaN NaN NaN NaN NaN NaN NaN 67.307 1 70.571 70.071 71.071 3.2636 0 0 0 0.28335 1 16225 16225 11.64 0 1 12293 1008 7708 7714 15261 15261 0.04923182791549152 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 nc|ENSG00000065457|Q9BUB4-2|ADAT1 MULTI-MSMS UPN47_class_I_Rep_3 4 564.31201171875 2 563.810782 1125.60701 0.43766 0.00024676 -0.10019 -5.6487E-05 0.33747 0.00019027 563.8105604887661 66.937 0.71545 70.128 69.903 70.618 3.1914 87 54 2 0 0 0 0.33654 1 16156 16156 11.64 3.4848 1 95293 12294 1008 7708 7714 15262 15262 0.04923182791549152 HLLFIGNVAP 10 Unmodified _HLLFIGNVAP_ 0 0 0 REV__ENSG00000072756.17,TRNT1,chr3,+,I6.1,3137454,3139588|45|8.72|1|intron REV__ENSG00000072756.17,TRNT1,chr3,+,I6.1,3137454,3139588|45|8.72|1|intron MSMS UPN48_class_I_Rep_1 5 540.811767578125 2 540.813659 1079.61277 NaN NaN NaN NaN NaN NaN NaN 34.656 1 38.171 37.671 38.671 3.5144 0 0 0 0.53105 1 5573 5573 10.824 0.75 1 + 12295 17831 7709 7715 15263 15263 0.07614326093880663 HLLFPARAK 9 Unmodified _HLLFPARAK_ 0 0 0 REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|111|3|sense REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|111|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8223266601562 2 526.821818 1051.62908 0.30562 0.00016101 0.53901 0.00028396 0.84463 0.00044497 526.8221371198923 44.729 0.098068 44.729 44.7 44.798 0 7 4 3 0 0 0 0.48414 1 9041 9041 2.3027 0.24298 1 805980 + 12296 29006 7710 7716 15264 15264 0.10533452050640335 HLLFSETPKTL 11 Unmodified _HLLFSETPKTL_ 0 0 0 REV__L1MD1_dup4786|chr11:78406666-78407349:+|3.387740589240161|0.0215834998344596|7.29|151.0|35|2|anti-sense REV__L1MD1_dup4786|chr11:78406666-78407349:+|3.387740589240161|0.0215834998344596|7.29|151.0|35|2|anti-sense MSMS UPN46_class_I_Rep_3 1 643.784423828125 2 643.36117 1284.70779 NaN NaN NaN NaN NaN NaN NaN 71.642 1 71.642 71.142 72.142 0 0 0 0 0.38417 1 16516 16516 2.7352 1.0826 1 + 12297 27351 7711 7717 15265 15265 0.07682214774399654 HLLGKRWPLQ 10 Unmodified _HLLGKRWPLQ_ 0 0 0 L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|10|1|sense L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|10|1|sense L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.373291015625 2 624.372207 1246.72986 0.60343 0.00037676 -0.82488 -0.00051503 -0.22145 -0.00013827 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.56333 1 21781 21781 1.4819 0.15237 1 1749400 12298 9727 7712 7718 15266 15266 0.11636484033510897 HLLHRSRW 8 Unmodified _HLLHRSRW_ 0 0 0 L1PA3_dup825|chr2:15439501-15445667:+|1.3258350730775432|0.0866026024755428|3.94|151.0|320|2|anti-sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|246|1|anti-sense;L1PA2_dup2628|chr8:120644162-120650187:-|3.7242522693894906|0.0926293798577183|5.33|151.0|347|3|anti-sense;L1PA2_dup2581|chr8:98614446-98620471:+|1.3316650932505545|0.0997431892731582|3.74|151.0|283|2|anti-sense;L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|304|2|anti-sense;L1PA6_dup3707|chrX:80766638-80771565:+|1.6748875731716508|0.0528637176499735|4.99|150.0|286|3|anti-sense L1PA3_dup825|chr2:15439501-15445667:+|1.3258350730775432|0.0866026024755428|3.94|151.0|320|2|anti-sense L1PA3_dup825|chr2:15439501-15445667:+|1.3258350730775432|0.0866026024755428|3.94|151.0|320|2|anti-sense MSMS UPN47_class_I_Rep_3 4 552.705322265625 2 552.812316 1103.61008 NaN NaN NaN NaN NaN NaN NaN 23.046 1 26.397 25.897 26.897 3.3503 0 0 0 0.40738 1 2861 2861 0.79363 0 1 12299 14191 7713 7719 15267 15267 0.06241915479608906 HLLKRFFFPPL 11 Unmodified _HLLKRFFFPPL_ 0 0 0 L1MB8_dup16343|chr22:42942236-42943618:-|2.8696596623222|0.0974384773616|4.88|151.0|70|2|anti-sense L1MB8_dup16343|chr22:42942236-42943618:-|2.8696596623222|0.0974384773616|4.88|151.0|70|2|anti-sense L1MB8_dup16343|chr22:42942236-42943618:-|2.8696596623222|0.0974384773616|4.88|151.0|70|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.2837829589844 3 472.283447 1413.82851 0.086058 4.0644E-05 -0.10526 -4.9715E-05 -0.019207 -9.0712E-06 472.2832769948158 93.096 0.54772 96.72 96.408 96.956 3.624 104 71 2 0 0 0 0.68024 1 22386 22386 0.50596 0 1 260520 12300 10968 7714 7720 15268 15268 0.13815087278544524 HLLLGRPQG 9 Unmodified _HLLLGRPQG_ 0 0 0 MSTA_dup17437|chr17:15515798-15516200:+|1.2568783509414885|0.2818389144576021|2.16|150.0|30|3|anti-sense;MSTA_dup469|chr1:84543328-84543708:-|1.3229520850879202|0.0732467415001607|4.17|151.0|23|3|anti-sense MSTA_dup17437|chr17:15515798-15516200:+|1.2568783509414885|0.2818389144576021|2.16|150.0|30|3|anti-sense MSTA_dup17437|chr17:15515798-15516200:+|1.2568783509414885|0.2818389144576021|2.16|150.0|30|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 495.7961120605469 2 495.795801 989.577048 0.12362 6.1291E-05 1.7536 0.00086942 1.8772 0.00093071 495.79613013097094 68.47 0.2793 71.835 71.713 71.992 3.3646 32 20 2 0 0 0 0.48643 1 16526 16526 2.0598 0 1 192250 12301 16526 7715 7721 15269 15269 0.08184288636903148 HLLLKEEQY 9 Unmodified _HLLLKEEQY_ 0 0 0 MER11C_dup626|chr10:45999335-46000000:-|2.036143367608155|0.2861462238388131|2.83|151.0|27|1|anti-sense MER11C_dup626|chr10:45999335-46000000:-|2.036143367608155|0.2861462238388131|2.83|151.0|27|1|anti-sense MER11C_dup626|chr10:45999335-46000000:-|2.036143367608155|0.2861462238388131|2.83|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 586.8206787109375 2 586.819138 1171.62372 NaN NaN NaN NaN NaN NaN NaN 26.794 1 30.425 29.925 30.925 3.6311 0 0 0 0.39518 1 3461 3461 1.8442 1.2427 1 12302 15797 7716 7722 15270 15270 0.04477683677509958 HLLLKIAPA 9 Unmodified _HLLLKIAPA_ 0 0 0 ENST00000605778.1_1_7:35738158-35738266:+|nuORF ENST00000605778.1_1_7:35738158-35738266:+|nuORF ENST00000605778.1_1_7:35738158-35738266:+|nuORF MSMS UPN48_class_I_Rep_2 6 488.3216247558594 2 488.32112 974.627687 NaN NaN NaN NaN NaN NaN NaN 76.332 1 79.933 79.433 80.433 3.6011 0 0 0 0.40038 1 18018 18018 0.6015 0 1 12303 7676 7717 7723 15271 15271 0.13935817961885277 HLLLSDFYY 9 Unmodified _HLLLSDFYY_ 0 0 0 L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|37|1|anti-sense L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|37|1|anti-sense L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|37|1|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7924194335938 2 585.795132 1169.57571 NaN NaN NaN NaN NaN NaN NaN 54.749 1 57.935 57.435 58.435 3.1856 0 0 0 0.38299 1 12457 12457 4.756 0.42677 1 12304 10766 7718 7724 15272 15272 -0.0022939024252082163 HLLMLPCWFH 10 Unmodified _HLLMLPCWFH_ 0 0 0 ENST00000602462.1_1_7:100845744-100846490:-|nuORF ENST00000602462.1_1_7:100845744-100846490:-|nuORF ENST00000602462.1_1_7:100845744-100846490:-|nuORF MSMS UPN48_class_I_Rep_3 7 432.8852233886719 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 57.771 1 61.303 60.803 61.803 3.5317 0 0 0 0.53105 1 12459 12459 2.086 0 1 12305 7666 7719 7725 15273 15273 -0.005249982472605552 HLLPWRLR 8 Unmodified _HLLPWRLR_ 0 0 0 REV__ENST00000394945.5_1_5:136403465-136476361:-|nuORF REV__ENST00000394945.5_1_5:136403465-136476361:-|nuORF MSMS UPN46_class_I_Rep_3 1 545.834228515625 2 545.83526 1089.65597 NaN NaN NaN NaN NaN NaN NaN 111.3 1 111.3 110.8 111.8 0 0 0 0 0.40738 1 27439 27439 0.79363 0 1 + 12306 22109 7720 7726 15274 15274 0.11472560661809439 HLLRGWKAFK 10 Unmodified _HLLRGWKAFK_ 0 0 0 ENST00000485260.1_1_3:100287677-100289600:+|nuORF ENST00000485260.1_1_3:100287677-100289600:+|nuORF ENST00000485260.1_1_3:100287677-100289600:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.3749389648438 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 33.22 1 33.22 32.72 33.72 0 0 0 0 0.53105 1 5784 5784 0.40072 0 1 12307 7030 7721 7727 15275 15275 0.11776787896110363 HLLRWVMC 8 Unmodified _HLLRWVMC_ 0 0 0 REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF REV__ENST00000461036.1_1_3:47048952-47049433:+|nuORF MSMS UPN48_class_I_Rep_1 5 529.2748413085938 2 529.275332 1056.53611 NaN NaN NaN NaN NaN NaN NaN 118.17 1 121.79 121.29 122.29 3.6215 0 0 0 0.40738 1 28818 28818 0.79363 0 1 + 12308 22427 7722 7728 15276 15276 0.01010488001406884 HLLSLAELR 9 Unmodified _HLLSLAELR_ 0 0 0 REV__nc|ENSG00000197785|Q9NVI7|ATAD3A REV__nc|ENSG00000197785|Q9NVI7|ATAD3A MSMS UPN48_class_I_Rep_1 5 526.3347778320312 2 526.316566 1050.61858 NaN NaN NaN NaN NaN NaN NaN 58.382 1 61.869 61.369 62.369 3.487 0 0 0 0.24828 1 12734 12734 13.508 0 1 + 12309 32093 7723 7729 15277 15277 0.09529424605557324 HLMLRWGL 8 Unmodified _HLMLRWGL_ 0 0 0 ENST00000539420.1_1_11:113286028-113288807:-|nuORF ENST00000539420.1_1_11:113286028-113288807:-|nuORF ENST00000539420.1_1_11:113286028-113288807:-|nuORF MSMS UPN48_class_I_Rep_1 5 513.2902221679688 2 513.289297 1024.56404 NaN NaN NaN NaN NaN NaN NaN 77.224 1 80.734 80.234 81.234 3.5102 0 0 0 0.40738 1 18367 18367 0.79363 0 1 12310 7347 7724 7730 15278 15278 0.05274134253158991 HLMMLHIPW 9 Unmodified _HLMMLHIPW_ 0 0 0 MER20_dup7654|chr8:141180109-141180311:+|1.645815737024782|0.3905260548510085|2.08|151.0|3|2|sense MER20_dup7654|chr8:141180109-141180311:+|1.645815737024782|0.3905260548510085|2.08|151.0|3|2|sense MER20_dup7654|chr8:141180109-141180311:+|1.645815737024782|0.3905260548510085|2.08|151.0|3|2|sense MSMS UPN47_class_I_Rep_1 2 589.2623291015625 2 589.30409 1176.59363 NaN NaN NaN NaN NaN NaN NaN 43.925 1 47.62 47.12 48.12 3.6951 0 0 0 0.40038 1 9082 9082 0.6015 0 1 12311 15840 7725 7731 15279 15279 0.012393302069767742 HLNACGRH 8 Unmodified _HLNACGRH_ 0 0 0 REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|165|3|anti-sense REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|165|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 453.7845764160156 2 454.219403 906.424253 -1.0816 -0.00049128 0.2004 9.1026E-05 -0.88119 -0.00040025 454.2193679727395 12.959 0.17513 16.332 16.191 16.366 3.3734 28 18 2 0 0 0 0.72333 1 190 190 2.8892 0 1 20563 + 12312 30528 7726 7732 15280 15280 -0.03270230031364463 HLNACGRH 8 Unmodified _HLNACGRH_ 0 0 0 REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|165|3|anti-sense REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|165|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 454.219403 906.424253 -0.51054 -0.0002319 -0.22422 -0.00010185 -0.73476 -0.00033374 454.21925248739916 12.992 0.1399 16.38 16.333 16.473 3.388 0.023839 -0.00026719 NaN 2.8892 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 19246 + 12313 30528 7726 7732 -0.03270230031364463 HLNFFIEPV 9 Unmodified _HLNFFIEPV_ 0 0 0 L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|235|1|anti-sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|235|1|anti-sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|235|1|anti-sense MSMS UPN48_class_I_Rep_1 5 558.296142578125 2 558.297842 1114.58113 NaN NaN NaN NaN NaN NaN NaN 36.888 1 40.395 39.895 40.895 3.507 0 0 0 0.38639 1 6210 6210 3.9444 0.3479 1 12314 9796 7727 7733 15281 15281 0.028423333399587136 HLNTSFSPLL 10 Unmodified _HLNTSFSPLL_ 0 0 0 L1MEg_dup6107|chr6:149574901-149575744:-|1.3017668634751127|0.1290387354351912|3.33|151.0|44|2|anti-sense L1MEg_dup6107|chr6:149574901-149575744:-|1.3017668634751127|0.1290387354351912|3.33|151.0|44|2|anti-sense L1MEg_dup6107|chr6:149574901-149575744:-|1.3017668634751127|0.1290387354351912|3.33|151.0|44|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 564.7697143554688 2 564.806031 1127.59751 0.50394 0.00028463 -0.95065 -0.00053693 -0.44671 -0.0002523 564.8055437250841 50.483 0.40095 53.71 53.381 53.782 3.2262 30 20 2 0 0 0 0.84575 1 11086 11086 13.906 0.86358 1 49205 12315 13408 7728 7734 15282 15282 0.038814145060541705 HLPAEFTPA 9 Unmodified _HLPAEFTPA_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-SECPEP UPN46_class_I_Rep_3 1 491.79608154296875 2 491.753267 981.491981 0.25096 0.00012341 0.21706 0.00010674 0.46802 0.00023015 491.7532932488191 48.725 0.41439 48.725 48.563 48.977 0 51 36 2 0 0 0 0.10341 1 10182 10182 16.942 5.302 1 157970 + 12316 5235 7729 7735 15283 15283 0.0004949838041738985 HLPAEFTPAV 10 Unmodified _HLPAEFTPAV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 541.2874145507812 2 541.287474 1080.5604 0.28883 0.00015634 -0.13325 -7.2129E-05 0.15558 8.4213E-05 541.2872811118859 59.615 0.44919 59.615 59.305 59.755 0 99 51 3 0 0 0 0.21503 2 13188 13149;13188 43.858 23.444 1 871520 + 12317 5235 7730 7736 15284;15285 15285 0.023337429602634074 HLPASRQW 8 Unmodified _HLPASRQW_ 0 0 0 HUERS-P3-int_dup478|chr11:74874263-74875596:+|1.4634502499744524|0.2003527102884963|2.87|151.0|27|2|sense HUERS-P3-int_dup478|chr11:74874263-74875596:+|1.4634502499744524|0.2003527102884963|2.87|151.0|27|2|sense HUERS-P3-int_dup478|chr11:74874263-74875596:+|1.4634502499744524|0.2003527102884963|2.87|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 497.765625 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 26.016 1 29.649 29.149 30.149 3.6332 0 0 0 0.40604 1 3254 3254 2.5775 0.27475 1 12318 8446 7731 7737 15286 15286 0.01743142568705025 HLPHLSPR 8 Unmodified _HLPHLSPR_ 0 0 0 REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF REV__ENST00000469480.1_1_11:62344316-62344720:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 478.7452392578125 2 478.774868 955.535184 0.12303 5.8904E-05 -3.2035 -0.0015337 -3.0805 -0.0014748 478.77281081945966 43.113 0.087708 46.624 46.589 46.677 3.5103 10 7 2 0 0 0 0.72333 1 8065 8065 9.3474 0 1 41218 + 12319 22494 7732 7738 15287 15287 0.0556373294837158 HLPLFLLTT 9 Unmodified _HLPLFLLTT_ 0 0 0 REV__L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|111|1|anti-sense REV__L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|111|1|anti-sense MSMS UPN48_class_I_Rep_1 5 527.8185424804688 2 527.81841 1053.62227 NaN NaN NaN NaN NaN NaN NaN 33.001 1 36.527 36.027 37.027 3.5266 0 0 0 0.39428 1 5091 5091 2.0598 0.21551 1 + 12320 30273 7733 7739 15288 15288 0.09760094379407747 HLPPSLPLIPQ 11 Unmodified _HLPPSLPLIPQ_ 0 0 0 ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3614501953125 2 606.360973 1210.70739 0.4097 0.00024843 0.28726 0.00017418 0.69696 0.00042261 606.3610125409924 32.912 0.24171 32.912 32.761 33.003 0 21 14 3 0 0 0 0.67398 1 5704 5704 1.0715 0.38109 1 340310 12321 6745 7734 7740 15289 15289 0.11046839845243994 HLPPSLPLIPQ 11 Unmodified _HLPPSLPLIPQ_ 0 0 0 ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.8626708984375 2 606.360973 1210.70739 0.48142 0.00029192 0.16505 0.00010008 0.64648 0.000392 606.3610059704984 36.151 0.11235 36.151 36.107 36.22 0 14 8 2 0 0 0 0.67398 1 6664 6664 1.0715 0.38109 1 223330 12322 6745 7734 7740 15290 15290 0.11046839845243994 HLPPSLPLIPQ 11 Unmodified _HLPPSLPLIPQ_ 0 0 0 ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 606.361328125 2 606.360973 1210.70739 0.6349 0.00038498 1.0009 0.00060689 1.6358 0.00099187 606.3609626437168 108.66 0.66357 112.19 112.08 112.74 3.5333 239 78 4 0 0 0 0.59712 1 26537 26537 5.2969 0.76802 1 60102000 12323 6745 7734 7740 15291 15291 0.11046839845243994 HLPPSLPLIPQ 11 Unmodified _HLPPSLPLIPQ_ 0 0 0 ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF ENST00000435096.1_1_7:139044701-139059229:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 606.3612060546875 2 606.360973 1210.70739 0.41771 0.00025328 0.24462 0.00014833 0.66233 0.00040161 606.360929065973 108.65 0.63891 112.28 112.17 112.81 3.6321 144 75 2 0 0 0 0.4608 1 26377 26377 8.7454 2.5396 1 25210000 12324 6745 7734 7740 15292 15292 0.11046839845243994 HLPQQNVVI 9 Unmodified _HLPQQNVVI_ 0 0 0 ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1 ENSG00000102804|ENST00000458659|TSC22D1 ENSG00000102804|ENST00000458659|TSC22D1 MULTI-MSMS UPN47_class_I_Rep_2 3 524.8012084960938 2 524.300916 1046.58728 -0.29661 -0.00015551 0.068047 3.5677E-05 -0.22856 -0.00011984 524.3009495112291 42.347 0.51295 45.708 45.516 46.029 3.3611 59 37 2 0 0 0 0.35081 1 8625 8625 10.824 1.4765 1 72353 12325 1626 7735 7741 15293 15293 0.06584851571483341 HLPQQNVVI 9 Unmodified _HLPQQNVVI_ 0 0 0 ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1 ENSG00000102804|ENST00000458659|TSC22D1 ENSG00000102804|ENST00000458659|TSC22D1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 524.300916 1046.58728 -0.01142 -5.9876E-06 -0.24047 -0.00012608 -0.25189 -0.00013207 524.3006864426579 42.596 0.53114 45.836 45.515 46.047 3.2394 0.063825 -0.00018005 NaN 10.824 50 34 2 NaN NaN NaN NaN 0 NaN NaN 0 77356 12326 1626 7735 7741 0.06584851571483341 HLPWFHPRN 9 Unmodified _HLPWFHPRN_ 0 0 0 nc|ENSG00000163814|Q9H5V8-3|CDCP1;nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1 nc|ENSG00000163814|Q9H5V8-3|CDCP1 nc|ENSG00000163814|Q9H5V8-3|CDCP1 MSMS UPN48_class_I_Rep_2 6 401.8775634765625 3 401.877192 1202.60975 NaN NaN NaN NaN NaN NaN NaN 15.659 1 19.313 18.813 19.813 3.6535 0 0 0 0.40038 1 670 670 0.26902 0 1 12327 4047 7736 7742 15294 15294 0.016544957597488974 HLQALRHLYVL 11 Unmodified _HLQALRHLYVL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87398353-87423749:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS UPN48_class_I_Rep_2 6 454.9383544921875 3 454.93834 1361.79319 0.095914 4.3635E-05 -0.10004 -4.551E-05 -0.0041215 -1.875E-06 454.93820486981554 42.762 1.0309 46.52 45.97 47.001 3.7579 184 89 3 0 0 0 0.65186 1 7857 7857 3.0723 0.63748 1 382330 12328 3638 7737 7743 15295 15295 0.12676424750748083 HLQFMEPKFKA 11 Unmodified _HLQFMEPKFKA_ 0 0 0 REV__ENSG00000116095|ENST00000234453|PLEKHA3 REV__ENSG00000116095|ENST00000234453|PLEKHA3 MSMS UPN47_class_I_Rep_1 2 459.2322082519531 3 459.244552 1374.71183 NaN NaN NaN NaN NaN NaN NaN 44.862 1 48.562 48.062 49.062 3.6999 0 0 0 0.32978 1 9369 9369 10.315 0.55098 1 + 12329 18594 7738 7744 15296 15296 0.03945980996468279 HLQGHQHPGQT 11 Unmodified _HLQGHQHPGQT_ 0 0 0 ENST00000488906.1_1_17:45236559-45237015:-|nuORF ENST00000488906.1_1_17:45236559-45237015:-|nuORF ENST00000488906.1_1_17:45236559-45237015:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 620.8047485351562 2 620.30251 1238.59047 0.052682 3.2679E-05 -0.6104 -0.00037863 -0.55772 -0.00034595 620.8039281280705 13.799 0.46098 13.799 13.639 14.1 0 84 52 2 0 0 0 0.67398 1 458 458 1.0715 0.46996 1 66194 12330 7052 7739 7745 15297 15297 -0.01928505321825469 HLQNYLTWPC 10 Unmodified _HLQNYLTWPC_ 0 0 0 REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|235|2|anti-sense REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|235|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 637.8038940429688 2 637.802965 1273.59138 0.4249 0.000271 1.7759 0.0011327 2.2008 0.0014037 637.804032916288 65.492 0.45604 68.847 68.623 69.08 3.3557 35 22 2 0 0 0 0.55983 1 15656 15656 3.9444 0.66309 1 77933 + 12331 23536 7740 7746 15298 15298 -0.03447426997126968 HLQRPCVHV 9 Unmodified _HLQRPCVHV_ 0 0 0 MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|21|1|anti-sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|21|1|anti-sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_3 7 545.2481079101562 2 544.792735 1087.57092 NaN NaN NaN NaN NaN NaN NaN 116.34 1 119.97 119.47 120.47 3.6312 0 0 0 0.39428 1 27689 27689 2.0598 1.3694 1 12332 16315 7741 7747 15299 15299 0.030634471337180003 HLRAIDNQY 9 Unmodified _HLRAIDNQY_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|1|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|4|intron ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS UPN47_class_I_Rep_3 4 565.291015625 2 565.291079 1128.56761 -0.14914 -8.431E-05 0.36773 0.00020787 0.21858 0.00012356 565.2912264028799 32.39 1.0096 35.676 35.306 36.315 3.2867 129 77 2 0 0 0 0.41259 1 5694 5694 7.2892 1.0834 1 139680 12333 1965 7742 7748 15300 15300 0.008464755607064944 HLRCFLLY 8 Unmodified _HLRCFLLY_ 0 0 0 REV__L1P2_dup1350|chr14:34797696-34798554:+|1.3258350730775432|0.0396433739145857|5.06|151.0|26|3|sense REV__L1P2_dup1350|chr14:34797696-34798554:+|1.3258350730775432|0.0396433739145857|5.06|151.0|26|3|sense MSMS UPN47_class_I_Rep_3 4 532.7738647460938 2 532.78913 1063.56371 NaN NaN NaN NaN NaN NaN NaN 45.364 1 48.609 48.109 49.109 3.2441 0 0 0 0.35537 1 9605 9605 20.871 0 1 + 12334 28841 7743 7749 15301 15301 0.03446714533311024 HLRFHVVH 8 Unmodified _HLRFHVVH_ 0 0 0 L1ME1_dup26610|chr16:29203286-29204056:-|1.239808902159934|0.0779932877284963|3.99|150.0|12|3|sense L1ME1_dup26610|chr16:29203286-29204056:-|1.239808902159934|0.0779932877284963|3.99|150.0|12|3|sense L1ME1_dup26610|chr16:29203286-29204056:-|1.239808902159934|0.0779932877284963|3.99|150.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 522.7958984375 2 522.796135 1043.57772 NaN NaN NaN NaN NaN NaN NaN 45.292 1 45.292 44.792 45.792 0 0 0 0 0.38221 1 9196 9196 14.582 0 1 12335 12344 7744 7750 15302 15302 0.05767128076604422 HLRLAPPQLPP 11 Unmodified _HLRLAPPQLPP_ 0 0 0 REV__nc|ENSG00000290691|A6NGW2|STRCP1 REV__nc|ENSG00000290691|A6NGW2|STRCP1 MSMS UPN48_class_I_Rep_1 5 619.8700561523438 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.749 1 91.368 90.868 91.868 3.6187 0 0 0 0.38417 1 21034 21034 5.2969 0.96765 1 + 12336 21332 7745 7751 15303 15303 0.1201706431365892 HLRLVKPK 8 Unmodified _HLRLVKPK_ 0 0 0 L1ME3B_dup3569|chr7:130104955-130105802:+|1.805977343016192|0.146736549009688|3.62|151.0|50|3|anti-sense L1ME3B_dup3569|chr7:130104955-130105802:+|1.805977343016192|0.146736549009688|3.62|151.0|50|3|anti-sense L1ME3B_dup3569|chr7:130104955-130105802:+|1.805977343016192|0.146736549009688|3.62|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_2 6 495.833984375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 22.006 1 25.652 25.152 26.152 3.6459 0 0 0 0.40746 1 2176 2176 0.69038 0 1 12337 12712 7746 7752 15304 15304 0.15458042430327623 HLRLYPGI 8 Unmodified _HLRLYPGI_ 0 0 0 L1MC4a_dup7583|chr13:40881760-40882601:+|2.578994079647617|0.4003609384787797|2.69|151.0|20|2|sense L1MC4a_dup7583|chr13:40881760-40882601:+|2.578994079647617|0.4003609384787797|2.69|151.0|20|2|sense L1MC4a_dup7583|chr13:40881760-40882601:+|2.578994079647617|0.4003609384787797|2.69|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 484.7881164550781 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 70.438 1 73.898 73.398 74.398 3.4598 0 0 0 0.40738 1 16415 16415 0.79363 0 1 12338 11611 7747 7753 15305 15305 0.07525787750955715 HLRPKPVYI 9 Unmodified _HLRPKPVYI_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS UPN46_class_I_Rep_3 1 561.8417358398438 2 561.842751 1121.67095 NaN NaN NaN NaN NaN NaN NaN 108.43 1 108.43 107.93 108.93 0 0 0 0 0.35339 1 26518 26518 7.9102 3.0131 1 12339 5238 7748 7754 15306 15306 0.11498007739169225 HLRRYVYV 8 Unmodified _HLRRYVYV_ 0 0 0 ENSG00000141627|ENST00000675505|DYM ENSG00000141627|ENST00000675505|DYM ENSG00000141627|ENST00000675505|DYM MULTI-SECPEP UPN47_class_I_Rep_2 3 552.8421020507812 2 553.3169 1104.61925 0.3681 0.00020368 -0.58885 -0.00032582 -0.22075 -0.00012214 553.818673236197 66.367 0.098648 69.626 69.56 69.658 3.2588 6 4 2 0 0 0 0.72333 1 15922 15922 2.5775 0.27475 1 19568 12340 3228 7749 7755 15307 15307 0.07112264045258598 HLRVGFALL 9 Unmodified _HLRVGFALL_ 0 0 0 REV__L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|117|1|anti-sense REV__L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|117|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.31640625 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 57.862 1 61.356 60.856 61.856 3.4942 0 0 0 0.39326 1 12573 12573 2.3027 0 1 + 12341 30678 7750 7756 15308 15308 0.10686049676382936 HLSFHLRKLK 10 Unmodified _HLSFHLRKLK_ 0 0 0 L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|31|3|sense L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|31|3|sense L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|31|3|sense MSMS UPN48_class_I_Rep_1 5 639.89404296875 2 639.893306 1277.77206 NaN NaN NaN NaN NaN NaN NaN 75.044 1 78.534 78.034 79.034 3.49 0 0 0 0.53105 1 17762 17762 0.40072 0 1 12342 11085 7751 7757 15309 15309 0.14428459441887753 HLSFPQSSDP 10 Unmodified _HLSFPQSSDP_ 0 0 0 REV__HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|13|1|sense REV__HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 557.7612915039062 2 557.76182 1113.50909 NaN NaN NaN NaN NaN NaN NaN 42.556 1 45.795 45.295 46.295 3.2394 0 0 0 0.53105 1 8743 8743 3.2813 0.54611 1 + 12343 23675 7752 7758 15310 15310 -0.04312625804413983 HLSHRPQAL 9 Unmodified _HLSHRPQAL_ 0 0 0 REV__L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|11|1|sense REV__L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|11|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 530.2715454101562 2 529.796332 1057.57811 0.13146 6.9647E-05 -0.47164 -0.00024987 -0.34018 -0.00018022 529.7961757825125 47.671 0.45294 51.366 51.257 51.709 3.6951 42 32 2 0 0 0 0.10301 1 10196 10196 18.146 0 1 142410 + 12344 25311 7753 7759 15311 15311 0.05162503005794861 HLSIINEYL 9 Unmodified _HLSIINEYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 551.3013305664062 2 551.300581 1100.58661 0.42946 0.00023676 -0.030385 -1.6752E-05 0.39907 0.00022001 551.300646463049 65.77 0.58707 68.955 68.691 69.278 3.1853 52 33 2 0 0 0 0.38714 1 15795 15795 8.7454 2.5396 1 118950 12345 3184 7754 7760 15312 15312 0.04034012131751297 HLSLLVHYV 9 Unmodified _HLSLLVHYV_ 0 0 0 REV__L1MB3_dup12144|chr12:120876844-120877498:+|1.8842143329030288|0.0108287678791423|7.44|151.0|44|2|anti-sense REV__L1MB3_dup12144|chr12:120876844-120877498:+|1.8842143329030288|0.0108287678791423|7.44|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_1 5 540.8113403320312 2 540.813659 1079.61277 NaN NaN NaN NaN NaN NaN NaN 34.789 1 38.304 37.804 38.804 3.5144 0 0 0 0.26661 1 5610 5610 12.532 0.89125 1 + 12346 25805 7755 7761 15313 15313 0.07614326093880663 HLTAKVYA 8 Unmodified _HLTAKVYA_ 0 0 0 REV__L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|201|3|anti-sense REV__L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|201|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 451.7575988769531 2 451.758352 901.502152 -0.53983 -0.00024387 -0.22309 -0.00010078 -0.76292 -0.00034465 451.75815341229946 35.455 0.54018 38.866 38.679 39.219 3.4114 42 33 2 0 0 0 0.82752 1 6580 6580 2.0598 0.21551 1 37301 + 12347 30379 7756 7762 15314 15314 0.04746106105665149 HLTIQKWT 8 Unmodified _HLTIQKWT_ 0 0 0 REV__Charlie3_dup260|chr11:112108943-112110105:-|1.4703294140722585|0.0209054923800076|6.14|151.0|17|2|sense REV__Charlie3_dup260|chr11:112108943-112110105:-|1.4703294140722585|0.0209054923800076|6.14|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.291259765625 2 513.790184 1025.56581 -0.2761 -0.00014186 -0.63033 -0.00032386 -0.90643 -0.00046571 513.789792828787 35.044 1.048 38.308 37.973 39.021 3.2639 135 76 2 0 0 0 0.82752 1 6363 6363 2.0598 0.21551 1 150220 + 12348 17375 7757 7763 15315 15315 0.05405466542742943 HLTKPKGWL 9 Unmodified _HLTKPKGWL_ 0 0 0 Tigger13a_dup669|chr3:141587815-141588538:-|1.8664581832875933|0.0530932498258685|5.14|151.0|49|3|anti-sense Tigger13a_dup669|chr3:141587815-141588538:-|1.8664581832875933|0.0530932498258685|5.14|151.0|49|3|anti-sense Tigger13a_dup669|chr3:141587815-141588538:-|1.8664581832875933|0.0530932498258685|5.14|151.0|49|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.3217163085938 2 540.321651 1078.62875 0.52194 0.00028201 0.12977 7.0119E-05 0.65171 0.00035213 540.3216345939417 108.73 1.8029 112.37 112.19 113.99 3.6355 383 216 2 0 0 0 0.37599 1 26870 26870 9.3831 2.66 1 143550000 12349 33233 7758 7764 15316 15316 0.09258032330808419 HLTLASKH 8 Unmodified _HLTLASKH_ 0 0 0 REV__ENSG00000196693|ENST00000359467|ZNF33B REV__ENSG00000196693|ENST00000359467|ZNF33B MULTI-SECPEP UPN47_class_I_Rep_1 2 453.78466796875 2 453.761426 905.5083 -0.44033 -0.00019981 -0.1928 -8.7487E-05 -0.63314 -0.00028729 453.7612632351499 12.919 0.083659 16.369 16.334 16.417 3.45 7 5 2 0 0 0 0.72333 1 191 191 6.3541 0 1 17850 + 12350 21051 7759 7765 15317 15317 0.05176624337184421 HLVGGHYCIL 10 Unmodified _HLVGGHYCIL_ 0 0 0 REV__ENST00000323786.9_2_16:70531840-70531912:-|nuORF REV__ENST00000323786.9_2_16:70531840-70531912:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.2888793945312 2 556.289494 1110.56443 NaN NaN NaN NaN NaN NaN NaN 63.33 1 66.5 66 67 3.1698 0 0 0 0.53105 1 15076 15076 7.9102 1.5561 1 + 12351 21751 7760 7766 15318 15318 0.013575091823440744 HLVKEAERT 9 Unmodified _HLVKEAERT_ 0 0 0 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1 MSMS UPN47_class_I_Rep_2 3 541.8009643554688 2 541.80128 1081.58801 NaN NaN NaN NaN NaN NaN NaN 34.715 1 38.14 37.64 38.64 3.4253 0 0 0 0.32573 1 6314 6314 9.3831 0 1 + 12352 18582 7761 7767 15319 15319 0.050476462205324424 HLVKKLAAL 9 Unmodified _HLVKKLAAL_ 0 0 0 RAB3GAP2|p.G763Vfs*12|1|0.05|ENSG00000118873|chr1:220182279-220182279|C/-|frameshift_variant;ENSG00000118873|ENST00000358951|RAB3GAP2 RAB3GAP2|p.G763Vfs*12|1|0.05|ENSG00000118873|chr1:220182279-220182279|C/-|frameshift_variant RAB3GAP2|p.G763Vfs*12|1|0.05|ENSG00000118873|chr1:220182279-220182279|C/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 496.34881591796875 2 496.834394 991.654236 NaN NaN NaN NaN NaN NaN NaN 82.058 1 82.058 81.558 82.558 0 0 0 0 0.4007 1 19416 19416 0.52476 0 1 12353 2264 7762 7768 15320 15320 0.15807506853229825 HLVLAELW 8 Unmodified _HLVLAELW_ 0 0 0 REV__MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense REV__MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 490.7814636230469 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 26.432 1 30.065 29.565 30.565 3.6332 0 0 0 0.40746 1 3364 3364 0.69038 0.088878 1 + 12354 31708 7763 7769 15321 15321 0.05850965656816243 HLVLYHLSV 9 Unmodified _HLVLYHLSV_ 0 0 0 nc|ENSG00000112511|O43189-2|PHF1;ENSG00000112511|ENST00000374516|PHF1 nc|ENSG00000112511|O43189-2|PHF1 nc|ENSG00000112511|O43189-2|PHF1 MSMS UPN48_class_I_Rep_1 5 540.8106689453125 2 540.813659 1079.61277 NaN NaN NaN NaN NaN NaN NaN 34.924 1 38.438 37.938 38.938 3.5144 0 0 0 0.28335 1 5648 5648 11.64 0 1 12355 2015 7764 7770 15322 15322 0.07614326093880663 HLVSDHTLF 9 Unmodified _HLVSDHTLF_ 0 0 0 REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 534.3324584960938 2 534.777274 1067.53999 0.47735 0.00025528 -0.13103 -7.0072E-05 0.34632 0.00018521 534.7771652166252 58.011 0.73681 61.543 61.137 61.874 3.5317 88 50 2 0 0 0 0.11425 1 12429 12429 12.532 0 1 278530 + 12356 28249 7765 7771 15323 15323 0.008925723004722386 HLVSDHTLF 9 Unmodified _HLVSDHTLF_ 0 0 0 REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 534.777274 1067.53999 0.31038 0.00016598 0.51985 0.000278 0.83023 0.00044399 534.7773048770204 58.598 0.47752 61.764 61.637 62.115 3.1658 0.1026 0.00067354 NaN 12.532 40 30 2 NaN NaN NaN NaN 0 NaN NaN 0 90388 + 12357 28249 7765 7771 0.008925723004722386 HLVSDHTLF 9 Unmodified _HLVSDHTLF_ 0 0 0 REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 534.777274 1067.53999 0.45842 0.00024515 -0.095427 -5.1032E-05 0.36299 0.00019412 534.7772362592243 58.152 0.73887 61.639 61.338 62.077 3.487 -0.022352 1.547E-05 NaN 12.532 88 43 3 NaN NaN NaN NaN 0 NaN NaN 0 220150 + 12358 28249 7765 7771 0.008925723004722386 HLVSDHTLF 9 Unmodified _HLVSDHTLF_ 0 0 0 REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|28|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 534.777274 1067.53999 0.53945 0.00028848 -0.14767 -7.8969E-05 0.39178 0.00020952 534.7770912253859 58.201 0.71445 61.7 61.305 62.02 3.4987 0.038397 -4.0405E-05 NaN 12.532 72 43 2 NaN NaN NaN NaN 0 NaN NaN 0 250600 + 12359 28249 7765 7771 0.008925723004722386 HLVSEINLR 9 Unmodified _HLVSEINLR_ 0 0 0 L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense MSMS UPN48_class_I_Rep_1 5 540.8121948242188 2 540.811648 1079.60874 NaN NaN NaN NaN NaN NaN NaN 35.064 1 38.579 38.079 39.079 3.5144 0 0 0 0.32573 1 5688 5688 9.3831 0 1 12360 11182 7766 7772 15324 15324 0.07212236600162214 HLVSEINLR 9 Unmodified _HLVSEINLR_ 0 0 0 L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 540.8121337890625 2 540.811648 1079.60874 0.45959 0.00024855 -0.64125 -0.0003468 -0.18166 -9.8245E-05 540.8113262915556 34.704 0.44956 38.377 38.139 38.588 3.6735 75 45 2 0 0 0 0.19147 3 5628 5581;5628;5685 21.537 0 1 96345 12361 11182 7766 7772 15325;15326;15327 15326 0.07212236600162214 HLVSEINLR 9 Unmodified _HLVSEINLR_ 0 0 0 L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 540.811279296875 2 540.811648 1079.60874 0.45773 0.00024755 -0.11116 -6.0115E-05 0.34658 0.00018743 540.8115440902528 34.956 0.098858 38.629 38.588 38.687 3.6735 11 10 2 0 0 0 0.35081 1 5704 5704 10.824 0 1 61365 12362 11182 7766 7772 15328 15328 0.07212236600162214 HLVSEINLR 9 Unmodified _HLVSEINLR_ 0 0 0 L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|81|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 540.81103515625 2 540.811648 1079.60874 0.44348 0.00023984 -0.80163 -0.00043353 -0.35815 -0.00019369 540.8111533434435 34.665 0.67224 38.337 38.001 38.674 3.6721 91 78 2 0 0 0 0.15547 2 5491 5491;5542 24.991 0 1 134400 12363 11182 7766 7772 15329;15330 15329 0.07212236600162214 HLVTDLMWD 9 Unmodified _HLVTDLMWD_ 0 0 0 REV__L1MEc_dup9746|chr9:5696753-5697426:-|1.2221356082107346|0.0407264730895142|4.91|150.0|46|3|anti-sense REV__L1MEc_dup9746|chr9:5696753-5697426:-|1.2221356082107346|0.0407264730895142|4.91|150.0|46|3|anti-sense MSMS UPN47_class_I_Rep_2 3 565.2715454101562 2 565.270967 1128.52738 NaN NaN NaN NaN NaN NaN NaN 35.169 1 38.594 38.094 39.094 3.4253 0 0 0 0.39428 1 6450 6450 2.0598 0.21551 1 + 12364 28501 7767 7773 15331 15331 -0.03174207154074793 HLVVESFPS 9 Unmodified _HLVVESFPS_ 0 0 0 ENSG00000165118|ENST00000376344|C9orf64 ENSG00000165118|ENST00000376344|C9orf64 ENSG00000165118|ENST00000376344|C9orf64 MULTI-SECPEP UPN47_class_I_Rep_2 3 507.84539794921875 2 507.766374 1013.5182 -0.2394 -0.00012156 0.095012 4.8244E-05 -0.14439 -7.3317E-05 507.7663396122626 13.087 0.24955 16.475 16.397 16.646 3.388 42 22 3 0 0 0 0.12527 1 280 280 0.6015 0.6015 1 64288 12365 4156 7768 7774 15332 15332 0.011977675519119657 HLVVESFPS 9 Unmodified _HLVVESFPS_ 0 0 0 ENSG00000165118|ENST00000376344|C9orf64 ENSG00000165118|ENST00000376344|C9orf64 ENSG00000165118|ENST00000376344|C9orf64 MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.766374 1013.5182 -0.62798 -0.00031887 0.25998 0.00013201 -0.368 -0.00018686 507.76642794238904 13.108 0.22617 16.481 16.399 16.625 3.3734 -0.0088507 8.5105E-05 NaN 0.6015 40 23 2 NaN NaN NaN NaN 0 NaN NaN 0 50488 12366 4156 7768 7774 0.011977675519119657 HLVYAHVLV 9 Unmodified _HLVYAHVLV_ 0 0 0 REV__L1PA4_dup10247|chr14:32131585-32133928:-|1.0544384681215269|0.0743807264033704|3.83|148.0|110|2|anti-sense REV__L1PA4_dup10247|chr14:32131585-32133928:-|1.0544384681215269|0.0743807264033704|3.83|148.0|110|2|anti-sense MSMS UPN46_class_I_Rep_3 1 525.8070678710938 2 525.808377 1049.6022 NaN NaN NaN NaN NaN NaN NaN 45.189 1 45.189 44.689 45.689 0 0 0 0 0.12887 1 9165 9165 20.871 0 1 + 12367 29583 7769 7775 15333 15333 0.07938343439445816 HLWAQHLR 8 Unmodified _HLWAQHLR_ 0 0 0 ENST00000334512.9_1_10:81074688-81075099:+|nuORF ENST00000334512.9_1_10:81074688-81075099:+|nuORF ENST00000334512.9_1_10:81074688-81075099:+|nuORF MSMS UPN48_class_I_Rep_3 7 530.7927856445312 2 530.793592 1059.57263 NaN NaN NaN NaN NaN NaN NaN 40.353 1 44.004 43.504 44.504 3.6509 0 0 0 0.40738 1 7164 7164 0.79363 0 1 12368 6197 7770 7776 15334 15334 0.045228242139728536 HLWFAYFF 8 Unmodified _HLWFAYFF_ 0 0 0 REV__L1PA14_dup2200|chr10:20263044-20264471:+|1.3377279755372773|0.0512824477646913|4.71|149.0|60|1|anti-sense REV__L1PA14_dup2200|chr10:20263044-20264471:+|1.3377279755372773|0.0512824477646913|4.71|149.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 565.77783203125 2 565.776545 1129.53854 NaN NaN NaN NaN NaN NaN NaN 111.36 1 114.93 114.43 115.43 3.572 0 0 0 0.40738 1 27468 27468 0.79363 0.10326 1 + 12369 29150 7771 7777 15335 15335 -0.021050169976206234 HLWFLVWM 8 Unmodified _HLWFLVWM_ 0 0 0 REV__L1PA5_dup515|chr1:174539298-174541493:-|1.6439653863285977|0.0561647015317323|4.87|150.0|81|1|anti-sense REV__L1PA5_dup515|chr1:174539298-174541493:-|1.6439653863285977|0.0561647015317323|4.87|150.0|81|1|anti-sense MSMS UPN47_class_I_Rep_2 3 566.236572265625 2 566.294048 1130.57354 NaN NaN NaN NaN NaN NaN NaN 28.932 1 32.424 31.924 32.924 3.4923 0 0 0 0.40738 1 4561 4561 0.79363 0 1 + 12370 29775 7772 7778 15336 15336 0.013479025386914145 HLWIRRNRER 10 Unmodified _HLWIRRNRER_ 0 0 0 ENST00000474593.1_1_6:73985278-74020035:-|nuORF;nc|ENSG00000135314|Q4VXA5|KHDC1 ENST00000474593.1_1_6:73985278-74020035:-|nuORF ENST00000474593.1_1_6:73985278-74020035:-|nuORF MSMS UPN47_class_I_Rep_3 4 479.27593994140625 3 479.276237 1434.80688 NaN NaN NaN NaN NaN NaN NaN 20.071 1 23.423 22.923 23.923 3.3514 0 0 0 0.53105 1 2000 2000 0.15932 0 1 12371 6950 7773 7779 15337 15337 0.10687095302546368 HLWPDRHR 8 Unmodified _HLWPDRHR_ 0 0 0 ENST00000301332.2_1_8:145694996-145697528:+|nuORF;ENST00000531423.1_1_8:145695969-145697528:+|nuORF ENST00000301332.2_1_8:145694996-145697528:+|nuORF ENST00000301332.2_1_8:145694996-145697528:+|nuORF MSMS UPN48_class_I_Rep_1 5 558.7937622070312 2 558.794124 1115.57369 NaN NaN NaN NaN NaN NaN NaN 15.926 1 19.448 18.948 19.948 3.5217 0 0 0 0.40738 1 705 705 0.79363 0 1 12372 6074 7774 7780 15338 15338 0.020530385828806175 HLWPGERH 8 Unmodified _HLWPGERH_ 0 0 0 REV__LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense REV__LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense MSMS UPN47_class_I_Rep_1 2 516.3167724609375 2 516.262125 1030.5097 NaN NaN NaN NaN NaN NaN NaN 75.064 1 78.457 77.957 78.957 3.3937 0 0 0 0.40738 1 18507 18507 0.79363 0 1 + 12373 30820 7775 7781 15339 15339 -0.00433741574056512 HLWRPRHKR 9 Unmodified _HLWRPRHKR_ 0 0 0 REV__L1M5_dup18307|chr5:143286697-143287817:+|3.3013359262839725|0.2861846075151429|3.53|151.0|12|1|sense REV__L1M5_dup18307|chr5:143286697-143287817:+|3.3013359262839725|0.2861846075151429|3.53|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 643.3801879882812 2 643.378689 1284.74283 NaN NaN NaN NaN NaN NaN NaN 46.568 1 46.568 46.068 47.068 0 0 0 0 0.4007 1 9556 9556 0.52476 0.12405 1 + 12374 24627 7776 7782 15340 15340 0.1118435993626008 HLWRRVMLK 9 Unmodified _HLWRRVMLK_ 0 0 0 ENSG00000142511|ENST00000270590|GPR32 ENSG00000142511|ENST00000270590|GPR32 ENSG00000142511|ENST00000270590|GPR32 MULTI-MSMS UPN46_class_I_Rep_3 1 619.8689575195312 2 619.868777 1237.723 0.65574 0.00040647 0.74939 0.00046452 1.4051 0.00087099 619.8691234459703 90.137 0.15279 90.137 90.042 90.195 0 20 11 2 0 0 0 0.50088 1 21708 21708 0.52476 0 1 687430 12375 3251 7777 7783 15341 15341 0.11364847881282003 HLWVRKYS 8 Unmodified _HLWVRKYS_ 0 0 0 L1MA5_dup2149|chr8:27381055-27381953:-|2.311508122671064|0.0141088025275492|7.36|151.0|56|3|anti-sense L1MA5_dup2149|chr8:27381055-27381953:-|2.311508122671064|0.0141088025275492|7.36|151.0|56|3|anti-sense L1MA5_dup2149|chr8:27381055-27381953:-|2.311508122671064|0.0141088025275492|7.36|151.0|56|3|anti-sense MSMS UPN48_class_I_Rep_2 6 544.8016967773438 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 18.798 1 22.449 21.949 22.949 3.6509 0 0 0 0.40738 1 1320 1320 0.79363 0.10326 1 12376 9883 7778 7784 15342 15342 0.0524057515392542 HLWVSEPW 8 Unmodified _HLWVSEPW_ 0 0 0 L1PBa1_dup7|chr1:89002146-89004766:-|1.775284609021767|0.134399177527304|3.72|151.0|136|2|anti-sense L1PBa1_dup7|chr1:89002146-89004766:-|1.775284609021767|0.134399177527304|3.72|151.0|136|2|anti-sense L1PBa1_dup7|chr1:89002146-89004766:-|1.775284609021767|0.134399177527304|3.72|151.0|136|2|anti-sense MSMS UPN47_class_I_Rep_3 4 527.2636108398438 2 527.261259 1052.50797 NaN NaN NaN NaN NaN NaN NaN 35.711 1 38.966 38.466 39.466 3.2547 0 0 0 0.40581 1 6647 6647 2.8892 0.58649 1 12377 15404 7779 7785 15343 15343 -0.016187953826602097 HLWVYFYFFPY 11 Unmodified _HLWVYFYFFPY_ 0 0 0 L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.9229736328125 3 527.923696 1580.74926 -0.11441 -6.0401E-05 -0.66305 -0.00035004 -0.77746 -0.00041044 527.9230793982088 21.481 0.3659 21.481 21.366 21.731 0 111 43 3 0 0 0 0.68024 2 2396 2396;2427 0.50596 0.41111 1 457520 12378 13342 7780 7786 15344;15345 15344 -0.0178860446624185 HLWVYFYFFPY 11 Unmodified _HLWVYFYFFPY_ 0 0 0 L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.9231567382812 3 527.923696 1580.74926 -0.1077 -5.6858E-05 -0.51535 -0.00027207 -0.62305 -0.00032893 527.9230618908043 21.811 0.30034 21.811 21.69 21.99 0 87 34 3 0 0 0 0.68024 1 2524 2524 0.50596 0 1 261440 12379 13342 7780 7786 15346 15346 -0.0178860446624185 HLWVYFYFFPY 11 Unmodified _HLWVYFYFFPY_ 0 0 0 L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.9232177734375 3 527.923696 1580.74926 -0.10074 -5.3185E-05 -0.61961 -0.00032711 -0.72035 -0.00038029 527.9231632589318 22.075 0.36403 22.075 21.99 22.354 0 73 38 2 0 0 0 0.68024 2 2597 2597;2630 0.50596 0.41111 1 295900 12380 13342 7780 7786 15347;15348 15347 -0.0178860446624185 HLWVYFYFFPY 11 Unmodified _HLWVYFYFFPY_ 0 0 0 L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.9222412109375 3 527.923696 1580.74926 -0.07838 -4.1379E-05 -0.55411 -0.00029253 -0.63249 -0.00033391 527.9230871288111 23.252 0.42161 23.252 22.886 23.308 0 67 40 3 0 0 0 0.68024 1 2875 2875 0.50596 0.051438 1 121290 12381 13342 7780 7786 15349 15349 -0.0178860446624185 HLWVYFYFFPY 11 Unmodified _HLWVYFYFFPY_ 0 0 0 L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|102|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 528.5950317382812 3 527.923696 1580.74926 0.035616 1.8802E-05 -0.40202 -0.00021224 -0.36641 -0.00019343 527.9229892208464 28.123 0.83914 28.123 27.923 28.763 0 102 60 2 0 0 0 22.551 1 4254 4254 0.50596 0 1 156290 12382 13342 7780 7786 15350 15350 -0.0178860446624185 HLYLEIHSFV 10 Unmodified _HLYLEIHSFV_ 0 0 0 Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|122|1|anti-sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|122|1|anti-sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|122|1|anti-sense MSMS UPN47_class_I_Rep_1 2 629.3331298828125 2 629.334956 1256.65536 NaN NaN NaN NaN NaN NaN NaN 44.041 1 47.736 47.236 48.236 3.6951 0 0 0 0.53105 1 9118 9118 1.4819 0.15237 1 12383 434 7781 7787 15351 15351 0.03729676431453299 HLYMRHCE 8 Unmodified _HLYMRHCE_ 0 0 0 REV__Tigger3b_dup3701|chr9:124366404-124367014:+|1.0259167765159622|0.0899461709580042|3.51|151.0|24|1|anti-sense REV__Tigger3b_dup3701|chr9:124366404-124367014:+|1.0259167765159622|0.0899461709580042|3.51|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.7417602539062 2 544.741854 1087.46915 NaN NaN NaN NaN NaN NaN NaN 36.177 1 39.687 39.187 40.187 3.5101 0 0 0 0.40738 1 6011 6011 0.79363 0 1 + 12384 32748 7782 7788 15352 15352 -0.07108167280352973 HLYPQAHARAA 11 Unmodified _HLYPQAHARAA_ 0 0 0 ENST00000580114.5_3_16:67197575-67198388:+|nuORF ENST00000580114.5_3_16:67197575-67198388:+|nuORF ENST00000580114.5_3_16:67197575-67198388:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 617.8260498046875 2 617.825621 1233.63669 0.45044 0.00027829 1.0413 0.00064335 1.4918 0.00092165 617.8261796015324 69.438 0.3001 72.643 72.417 72.717 3.2044 37 24 2 0 0 0 0.67113 1 16938 16938 1.3295 0 1 60111 12385 7550 7783 7789 15353 15353 0.029215595802725147 HLYQYYSF 8 Unmodified _HLYQYYSF_ 0 0 0 REV__L1MB5_dup2201|chr5:57215325-57215817:-|1.1153272597325974|0.0236599563628552|5.56|151.0|23|1|anti-sense REV__L1MB5_dup2201|chr5:57215325-57215817:-|1.1153272597325974|0.0236599563628552|5.56|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_1 2 560.758056640625 2 560.758549 1119.50255 NaN NaN NaN NaN NaN NaN NaN 35.287 1 38.964 38.464 39.464 3.6762 0 0 0 0.40604 1 6454 6454 2.5775 0 1 + 12386 26042 7784 7790 15354 15354 -0.05242518965155796 HMANEGFI 8 Unmodified _HMANEGFI_ 0 0 0 L1ME1_dup11828|chr6:87684370-87685045:-|1.0795442215529212|0.083184776844731|3.7|151.0|39|2|anti-sense L1ME1_dup11828|chr6:87684370-87685045:-|1.0795442215529212|0.083184776844731|3.7|151.0|39|2|anti-sense L1ME1_dup11828|chr6:87684370-87685045:-|1.0795442215529212|0.083184776844731|3.7|151.0|39|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 459.7106628417969 2 459.710545 917.406537 0.21165 9.7297E-05 -0.18553 -8.5292E-05 0.026116 1.2006E-05 459.71048683151093 100.54 0.65285 100.54 100.06 100.71 0 168 76 3 0 0 0 0.82752 1 24554 24554 5.2307 0.47466 1 2917500 12387 12184 7785 7791 15355 15355 -0.05546990076891234 HMASSRPPHP 10 Unmodified _HMASSRPPHP_ 0 0 0 REV__nc|ENSG00000172915|Q8NFP9-2|NBEA REV__nc|ENSG00000172915|Q8NFP9-2|NBEA MSMS UPN46_class_I_Rep_3 1 558.7697143554688 2 558.772 1115.52945 NaN NaN NaN NaN NaN NaN NaN 71.689 1 71.689 71.189 72.189 0 0 0 0 0.53105 1 16529 16529 3.9444 1.3669 1 + 12388 20463 7786 7792 15356 15356 -0.02369733625596382 HMCKARWV 8 Unmodified _HMCKARWV_ 0 0 0 REV__LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense REV__LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 516.2822875976562 2 515.757307 1029.50006 0.29013 0.00014963 -0.31878 -0.00016441 -0.028652 -1.4777E-05 515.7572480655482 58.517 0.10508 62.04 61.974 62.079 3.5231 6 5 2 0 0 0 0.72333 1 12686 12686 0.79363 0 1 34570 + 12389 30859 7787 7793 15357 15357 -0.013509691754507003 HMEDTHPDHQ 10 Unmodified _HMEDTHPDHQ_ 0 0 0 nc|ENSG00000129675|Q15052-2|ARHGEF6;ENSG00000129675|ENST00000250617|ARHGEF6 nc|ENSG00000129675|Q15052-2|ARHGEF6 nc|ENSG00000129675|Q15052-2|ARHGEF6 MSMS UPN46_class_I_Rep_3 1 623.7489013671875 2 623.748918 1245.48328 NaN NaN NaN NaN NaN NaN NaN 26.9 1 26.9 26.4 27.4 0 0 0 0 0.53105 1 3918 3918 1.6526 1.0511 1 12390 2628 7788 7794 15358 15358 -0.1296384331835725 HMFFKKIIV 9 Unmodified _HMFFKKIIV_ 0 0 0 HAL1_dup20448|chr17:47427644-47427850:-|1.176969905183913|0.3343142309971958|1.82|151.0|1|1|sense HAL1_dup20448|chr17:47427644-47427850:-|1.176969905183913|0.3343142309971958|1.82|151.0|1|1|sense HAL1_dup20448|chr17:47427644-47427850:-|1.176969905183913|0.3343142309971958|1.82|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 581.8436889648438 2 581.843905 1161.67326 NaN NaN NaN NaN NaN NaN NaN 89.545 1 93.292 92.792 93.792 3.7471 0 0 0 0.40038 1 21341 21341 0.6015 0 1 12391 7862 7789 7795 15359 15359 0.09888720152639507 HMFFTILI 8 Unmodified _HMFFTILI_ 0 0 0 L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|206|2|anti-sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|206|2|anti-sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|206|2|anti-sense MSMS UPN47_class_I_Rep_1 2 511.2728576660156 2 511.280606 1020.54666 NaN NaN NaN NaN NaN NaN NaN 53.101 1 56.629 56.129 57.129 3.5278 0 0 0 0.40404 1 11869 11869 5.2307 0 1 12392 15242 7790 7796 15360 15360 0.037207939275049284 HMGEERPTAIG 11 Unmodified _HMGEERPTAIG_ 0 0 0 REV__L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|11|1|sense REV__L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 599.2890625 2 599.287679 1196.56081 NaN NaN NaN NaN NaN NaN NaN 21.318 1 24.668 24.168 25.168 3.3496 0 0 0 0.38417 1 2364 2364 1.1933 0.59184 1 + 12393 30625 7791 7797 15361 15361 -0.02961205382166554 HMHVRFSL 8 Unmodified _HMHVRFSL_ 0 0 0 REV__L1PA4_dup11793|chr22:23662984-23669138:+|5.3803792066900895|0.2512553308165009|4.42|151.0|302|3|anti-sense REV__L1PA4_dup11793|chr22:23662984-23669138:+|5.3803792066900895|0.2512553308165009|4.42|151.0|302|3|anti-sense MSMS UPN47_class_I_Rep_3 4 513.7681274414062 2 513.768729 1025.5229 NaN NaN NaN NaN NaN NaN NaN 24.034 1 27.385 26.885 27.885 3.3509 0 0 0 0.40738 1 3158 3158 0.79363 0 1 + 12394 29570 7792 7798 15362 15362 0.011163732136765248 HMHVYNST 8 Unmodified _HMHVYNST_ 0 0 0 L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|101|3|sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|101|3|sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|101|3|sense MSMS UPN46_class_I_Rep_3 1 494.71893310546875 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 72.911 1 72.911 72.411 73.411 0 0 0 0 0.40738 1 16876 16876 0.79363 0 1 12395 15104 7793 7799 15363 15363 -0.07096489190928423 HMIYKYFL 8 Unmodified _HMIYKYFL_ 0 0 0 L1MB7_dup20111|chr17:61694117-61696579:-|1.535225846775249|0.013990509203997|6.78|149.0|152|3|anti-sense;L1MB7_dup4561|chr3:123235189-123236213:+|2.515928895536391|0.0865313680291251|4.86|151.0|63|2|anti-sense L1MB7_dup20111|chr17:61694117-61696579:-|1.535225846775249|0.013990509203997|6.78|149.0|152|3|anti-sense L1MB7_dup20111|chr17:61694117-61696579:-|1.535225846775249|0.013990509203997|6.78|149.0|152|3|anti-sense MSMS UPN47_class_I_Rep_1 2 557.792724609375 2 557.791338 1113.56812 NaN NaN NaN NaN NaN NaN NaN 50.987 1 54.58 54.08 55.08 3.5932 0 0 0 0.39819 1 11228 11228 8.5933 1.8701 1 12396 10785 7794 7800 15364 15364 0.015881789562172344 HMKPLSLAAIP 11 Unmodified _HMKPLSLAAIP_ 0 0 0 REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|169|3|anti-sense REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|169|3|anti-sense MSMS UPN47_class_I_Rep_1 2 589.3432006835938 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 83.987 1 87.552 87.052 88.052 3.5655 0 0 0 0.38417 1 21013 21013 3.2813 0.28607 1 + 12397 24141 7795 7801 15365 15365 0.08763210939059718 HMKPLSLAAIP 11 Unmodified _HMKPLSLAAIP_ 0 0 0 REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|169|3|anti-sense REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|169|3|anti-sense MSMS UPN48_class_I_Rep_1 5 589.3419799804688 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 84.135 1 87.733 87.233 88.233 3.5973 0 0 0 0.38417 1 20140 20140 1.3295 0.13619 1 + 12398 24141 7795 7801 15366 15366 0.08763210939059718 HMLICHPYIF 10 Unmodified _HMLICHPYIF_ 0 0 0 L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|56|1|anti-sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|56|1|anti-sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_2 6 637.3124389648438 2 637.314654 1272.61476 NaN NaN NaN NaN NaN NaN NaN 38.23 1 41.946 41.446 42.446 3.7164 0 0 0 0.53105 1 6636 6636 1.8442 0.51471 1 12399 12430 7796 7802 15367 15367 -0.010647044841789466 HMLIRMPK 8 Unmodified _HMLIRMPK_ 0 0 0 L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|11|2|sense L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|11|2|sense L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 513.2901611328125 2 513.290982 1024.56741 NaN NaN NaN NaN NaN NaN NaN 77.039 1 80.454 79.954 80.954 3.4149 0 0 0 0.40738 1 19092 19092 0.79363 0 1 12400 11112 7797 7803 15368 15368 0.05611061035506282 HMLKVVGLP 9 Unmodified _HMLKVVGLP_ 0 0 0 MER9a3_dup527|chr19:12278024-12278493:+|1.7007629013146797|0.4500819150211096|1.92|151.0|13|3|sense MER9a3_dup527|chr19:12278024-12278493:+|1.7007629013146797|0.4500819150211096|1.92|151.0|13|3|sense MER9a3_dup527|chr19:12278024-12278493:+|1.7007629013146797|0.4500819150211096|1.92|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 497.266357421875 2 497.29933 992.584108 NaN NaN NaN NaN NaN NaN NaN 65.695 1 69.052 68.552 69.552 3.3571 0 0 0 0.34056 1 15688 15688 8.5933 4.9968 1 12401 16234 7798 7804 15369 15369 0.08751885193100861 HMLNWDEL 8 Unmodified _HMLNWDEL_ 0 0 0 REV__ENST00000347869.7_1_3:50144979-50147044:+|nuORF REV__ENST00000347869.7_1_3:50144979-50147044:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 529.2423706054688 2 529.242209 1056.46987 0.34339 0.00018174 0.26323 0.00013931 0.60663 0.00032105 529.2422587137144 78.074 0.67912 81.596 81.242 81.921 3.5221 128 74 3 0 0 0 0.82752 1 18602 18602 4.3292 1.7518 1 251920 + 12402 21846 7799 7805 15370 15370 -0.05611049359640674 HMLYMCAYVY 10 Unmodified _HMLYMCAYVY_ 0 0 0 L1MC4a_dup123|chr1:41125865-41127591:-|1.4499233827024811|0.0458599002927663|4.98|151.0|97|2|anti-sense L1MC4a_dup123|chr1:41125865-41127591:-|1.4499233827024811|0.0458599002927663|4.98|151.0|97|2|anti-sense L1MC4a_dup123|chr1:41125865-41127591:-|1.4499233827024811|0.0458599002927663|4.98|151.0|97|2|anti-sense MSMS UPN47_class_I_Rep_2 3 647.275390625 2 647.27688 1292.53921 NaN NaN NaN NaN NaN NaN NaN 43.009 1 46.367 45.867 46.867 3.3584 0 0 0 0.53105 1 8828 8828 1.8442 0 1 12403 11551 7800 7806 15371 15371 -0.09536049726739293 HMMDCYLSAQ 10 Unmodified _HMMDCYLSAQ_ 0 0 0 ENSG00000106536|ENST00000518318|POU6F2 ENSG00000106536|ENST00000518318|POU6F2 ENSG00000106536|ENST00000518318|POU6F2 MSMS UPN48_class_I_Rep_1 5 599.7407836914062 2 599.738119 1197.46169 NaN NaN NaN NaN NaN NaN NaN 115.54 1 119.17 118.67 119.67 3.6282 0 0 0 0.53105 1 28111 28111 1.6526 1.0511 1 12404 1791 7801 7807 15372 15372 -0.12914687662942015 HMPLAYPF 8 Unmodified _HMPLAYPF_ 0 0 0 REV__MER21B_dup557|chr3:129718985-129719712:+|1.028988457013287|0.0099408539269994|6.69|151.0|12|2|sense REV__MER21B_dup557|chr3:129718985-129719712:+|1.028988457013287|0.0099408539269994|6.69|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 488.243408203125 2 488.241481 974.468409 NaN NaN NaN NaN NaN NaN NaN 115.35 1 118.83 118.33 119.33 3.4802 0 0 0 0.40581 1 28362 28362 2.8892 0 1 + 12405 31214 7802 7808 15373 15373 -0.019846386577455633 HMRGCLRK 8 Unmodified _HMRGCLRK_ 0 0 0 REV__L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|26|1|anti-sense REV__L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_2 3 500.7664794921875 2 500.768206 999.521858 NaN NaN NaN NaN NaN NaN NaN 41.745 1 45.11 44.61 45.61 3.3655 0 0 0 0.40625 1 8443 8443 2.3027 0.24298 1 + 12406 26200 7803 7809 15374 15374 0.022078355731196098 HMRLSQFGY 9 Unmodified _HMRLSQFGY_ 0 0 0 REV__nc|ENSG00000116005|Q9UHG3-2|PCYOX1 REV__nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MSMS UPN47_class_I_Rep_1 2 569.7777709960938 2 569.776751 1137.53895 NaN NaN NaN NaN NaN NaN NaN 17.03 1 20.552 20.052 21.052 3.5224 0 0 0 0.4007 1 1201 1201 0.52476 0 1 + 12407 18590 7804 7810 15375 15375 -0.024319653400652896 HMVSSHVDTY 10 Unmodified _HMVSSHVDTY_ 0 0 0 REV__L1ME1_dup28020|chr17:82547620-82548605:-|1.3718733179792972|0.0188943812057022|6.18|150.0|5|1|sense REV__L1ME1_dup28020|chr17:82547620-82548605:-|1.3718733179792972|0.0188943812057022|6.18|150.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 588.2484741210938 2 588.26113 1174.50771 NaN NaN NaN NaN NaN NaN NaN 66.078 1 69.264 68.764 69.764 3.1853 0 0 0 0.53105 1 15913 15913 6.2058 0.47393 1 + 12408 27724 7805 7811 15376 15376 -0.07256583164826225 HMWDMFMSY 9 Unmodified _HMWDMFMSY_ 0 0 0 REV__L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|34|1|sense REV__L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|34|1|sense MSMS UPN47_class_I_Rep_3 4 624.2365112304688 2 624.237755 1246.46096 NaN NaN NaN NaN NaN NaN NaN 21.901 1 25.25 24.75 25.75 3.3496 0 0 0 0.40038 1 2531 2531 0.6015 0.076735 1 + 12409 25102 7806 7812 15377 15377 -0.15241482311989785 HMYPKFLYFGY 11 Unmodified _HMYPKFLYFGY_ 0 0 0 L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|84|3|anti-sense L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|84|3|anti-sense L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|84|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 489.7898864746094 3 489.237286 1464.69003 0.15302 7.4864E-05 -0.11428 -5.5911E-05 0.03874 1.8953E-05 489.2371732159014 41.667 1.0033 45.313 44.769 45.773 3.6458 174 104 2 0 0 0 22.551 1 7482 7482 3.0723 0.22898 1 346790 12410 13150 7807 7813 15378 15378 -0.023728237520799667 HMYPKLWI 8 Unmodified _HMYPKLWI_ 0 0 0 L1ME3A_dup12450|chr14:89593929-89594750:-|1.9491719430293024|0.0114035002544617|7.42|150.0|22|2|sense L1ME3A_dup12450|chr14:89593929-89594750:-|1.9491719430293024|0.0114035002544617|7.42|150.0|22|2|sense L1ME3A_dup12450|chr14:89593929-89594750:-|1.9491719430293024|0.0114035002544617|7.42|150.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 544.2919921875 2 544.291505 1086.56846 NaN NaN NaN NaN NaN NaN NaN 77.2 1 77.2 76.7 77.7 0 0 0 0 0.40738 1 18036 18036 0.79363 0 1 12411 12627 7808 7814 15379 15379 0.02863598676071888 HNAVSFVNI 9 Unmodified _HNAVSFVNI_ 0 0 0 L1ME1_dup8059|chr4:77911761-77914088:+|1.1662667044716504|0.0260225007912765|5.49|150.0|67|3|sense L1ME1_dup8059|chr4:77911761-77914088:+|1.1662667044716504|0.0260225007912765|5.49|150.0|67|3|sense L1ME1_dup8059|chr4:77911761-77914088:+|1.1662667044716504|0.0260225007912765|5.49|150.0|67|3|sense MSMS UPN48_class_I_Rep_1 5 500.7656555175781 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 26.901 1 30.464 29.964 30.964 3.5629 0 0 0 0.39598 1 3378 3378 1.6526 0 1 12412 12442 7809 7815 15380 15380 0.014003031290144463 HNFHFHCF 8 Unmodified _HNFHFHCF_ 0 0 0 REV__L1ME3A_dup10993|chr12:29161236-29162328:-|1.423092395785832|0.0311215637270788|5.51|151.0|55|2|anti-sense REV__L1ME3A_dup10993|chr12:29161236-29162328:-|1.423092395785832|0.0311215637270788|5.51|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_1 5 544.3074951171875 2 544.729603 1087.44465 NaN NaN NaN NaN NaN NaN NaN 117.13 1 120.75 120.25 121.25 3.6254 0 0 0 0.40738 1 28541 28541 0.79363 0 1 + 12413 27982 7810 7816 15381 15381 -0.09557059371559262 HNFRFKYV 8 Unmodified _HNFRFKYV_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MSMS UPN48_class_I_Rep_3 7 555.7966918945312 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 31.141 1 34.855 34.355 35.355 3.7146 0 0 0 0.40604 1 4571 4571 2.5775 0 1 + 12414 645 7811 7817 15382 15382 0.026642886369018015 HNHNFTTRKY 10 Unmodified _HNHNFTTRKY_ 0 0 0 L1MD3_dup3663|chr12:115947365-115948023:+|1.0169917282977778|0.0497668950108195|4.35|151.0|11|2|sense L1MD3_dup3663|chr12:115947365-115948023:+|1.0169917282977778|0.0497668950108195|4.35|151.0|11|2|sense L1MD3_dup3663|chr12:115947365-115948023:+|1.0169917282977778|0.0497668950108195|4.35|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 439.885986328125 3 439.886415 1316.63742 -1.0406 -0.00045775 0.13592 5.979E-05 -0.90469 -0.00039796 439.88645092672306 25.914 1.6682 29.262 28.884 30.552 3.3478 422 150 4 0 0 0 0.46994 3 3664 3664;3700;3845 14.218 14.218 1 1129600 12415 12073 7812 7818 15383;15384;15385 15383 -0.00823645770674375 HNIWKRIQ 8 Unmodified _HNIWKRIQ_ 0 0 0 L1MEa_dup185|chr7:37183907-37184410:-|1.951253909404492|0.0264428386641114|6.21|151.0|7|2|sense L1MEa_dup185|chr7:37183907-37184410:-|1.951253909404492|0.0264428386641114|6.21|151.0|7|2|sense L1MEa_dup185|chr7:37183907-37184410:-|1.951253909404492|0.0264428386641114|6.21|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 547.8157958984375 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 119.52 1 123.08 122.58 123.58 3.566 0 0 0 0.40738 1 28402 28402 0.79363 0 1 12416 12980 7813 7819 15386 15386 0.07143379902527158 HNKHFRTMA 9 Unmodified _HNKHFRTMA_ 0 0 0 REV__L1M6_dup3313|chr9:85649466-85650241:-|5.290963484217395|0.2868981947694181|4.2|151.0|28|3|sense REV__L1M6_dup3313|chr9:85649466-85650241:-|5.290963484217395|0.2868981947694181|4.2|151.0|28|3|sense MSMS UPN48_class_I_Rep_2 6 571.2891235351562 2 571.287817 1140.56108 NaN NaN NaN NaN NaN NaN NaN 63.629 1 67.104 66.604 67.604 3.4743 0 0 0 0.37476 1 14322 14322 6.7232 0 1 + 12417 24720 7814 7820 15387 15387 -0.003577408716409991 HNKIFSSF 8 Unmodified _HNKIFSSF_ 0 0 0 REV__L1ME1_dup29003|chr19:15300640-15301280:+|2.070245351540779|0.0219659782414132|6.56|151.0|4|1|sense REV__L1ME1_dup29003|chr19:15300640-15301280:+|2.070245351540779|0.0219659782414132|6.56|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.75518798828125 2 490.253434 978.492316 -0.35455 -0.00017382 -0.34036 -0.00016686 -0.69491 -0.00034068 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 1 6540 6540 4.3292 0 1 61780 + 12418 27737 7815 7821 15388 15388 0.002209181002854166 HNKIKMLRIR 10 Unmodified _HNKIKMLRIR_ 0 0 0 LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.9397888183594 3 436.939686 1307.79723 -0.047643 -2.0817E-05 0.21849 9.5468E-05 0.17085 7.4651E-05 436.93975156174486 45.654 0.94482 49.171 48.854 49.799 3.5162 122 65 2 0 0 0 0.56034 4 8876 8788;8876;8955;8979 3.5871 1.7423 1 208360 12419 15507 7816 7822 15389;15390;15391;15392 15390 0.15564190972781944 HNKIKMLRIR 10 Unmodified _HNKIKMLRIR_ 0 0 0 LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.27392578125 3 436.939686 1307.79723 -0.050378 -2.2012E-05 0.11329 4.9502E-05 0.062914 2.7489E-05 437.2741189410975 46.502 0.50916 50.021 49.771 50.281 3.5192 51 30 2 0 0 0 0.56296 1 9033 9033 1.7423 0 1 398520 12420 15507 7816 7822 15393 15393 0.15564190972781944 HNKIKMLRIR 10 Unmodified _HNKIKMLRIR_ 0 0 0 LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.9396667480469 3 436.939686 1307.79723 0.020324 8.8805E-06 0.045243 1.9768E-05 0.065567 2.8649E-05 436.9396844255266 45.584 1.7437 49.342 48.761 50.504 3.7579 190 125 2 0 0 0 0.56296 3 8820 8820;8862;8909 1.7423 1.7423 1 267230 12421 15507 7816 7822 15394;15395;15396 15394 0.15564190972781944 HNKIRKAI 8 Unmodified _HNKIRKAI_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|83|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|83|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|83|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 490.57928466796875 2 490.311618 978.608683 -0.35879 -0.00017592 -0.31583 -0.00015486 -0.67462 -0.00033077 490.31144090425306 13.777 0.22898 17.234 17.163 17.392 3.457 37 27 2 0 0 0 0.72333 1 437 437 2.5775 0 1 19921 12422 8524 7817 7823 15397 15397 0.11852281390827102 HNMNLKCKR 9 Unmodified _HNMNLKCKR_ 0 0 0 L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|24|3|sense L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|24|3|sense L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|24|3|sense MSMS UPN48_class_I_Rep_2 6 572.2960815429688 2 572.297327 1142.5801 NaN NaN NaN NaN NaN NaN NaN 57.61 1 61.124 60.624 61.624 3.5142 0 0 0 0.39518 1 12474 12474 1.8442 0.36234 1 12423 14834 7818 7824 15398 15398 0.014514724277432833 HNNHLWPLF 9 Unmodified _HNNHLWPLF_ 0 0 0 REV__ENST00000528638.1_1_11:77300495-77320419:+|nuORF REV__ENST00000528638.1_1_11:77300495-77320419:+|nuORF MSMS UPN48_class_I_Rep_2 6 589.29931640625 2 589.298707 1176.58286 NaN NaN NaN NaN NaN NaN NaN 34.838 1 38.511 38.011 39.011 3.6735 0 0 0 0.40038 1 5664 5664 0.6015 0 1 + 12424 20649 7819 7825 15399 15399 0.0016338714856374281 HNPPCRSHRP 10 Unmodified _HNPPCRSHRP_ 0 0 0 REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4 REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4 MSMS UPN46_class_I_Rep_3 1 600.7955932617188 2 600.793798 1199.57304 NaN NaN NaN NaN NaN NaN NaN 47.541 1 47.541 47.041 48.041 0 0 0 0 0.53105 1 9839 9839 2.9952 0.26005 1 + 12425 20585 7820 7826 15400 15400 -0.01876124128466472 HNRIRQAY 8 Unmodified _HNRIRQAY_ 0 0 0 REV__L1PA5_dup10243|chr16:70007170-70008703:+|1.7784501260233048|0.1098475455875325|4.02|151.0|23|2|sense REV__L1PA5_dup10243|chr16:70007170-70008703:+|1.7784501260233048|0.1098475455875325|4.02|151.0|23|2|sense MSMS UPN48_class_I_Rep_1 5 529.28759765625 2 529.286131 1056.55771 NaN NaN NaN NaN NaN NaN NaN 58.749 1 62.236 61.736 62.736 3.487 0 0 0 0.39624 1 12847 12847 9.3474 1.4373 1 + 12426 29702 7821 7827 15401 15401 0.03169332345987641 HNRPHIQAF 9 Unmodified _HNRPHIQAF_ 0 0 0 REV__Tigger1_dup5131|chr6:110675653-110676898:+|1.4866182175502465|0.0317880289331355|5.55|151.0|54|1|anti-sense REV__Tigger1_dup5131|chr6:110675653-110676898:+|1.4866182175502465|0.0317880289331355|5.55|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.292724609375 2 560.293956 1118.57336 0.014752 8.2654E-06 -1.2551 -0.00070324 -1.2404 -0.00069497 560.2930378699787 41.766 0.4029 45.446 45.214 45.617 3.6792 40 28 2 0 0 0 0.35081 1 8409 8409 10.824 2.0785 1 66507 + 12427 32461 7822 7828 15402 15402 0.01881618863035328 HNRPHIQAF 9 Unmodified _HNRPHIQAF_ 0 0 0 REV__Tigger1_dup5131|chr6:110675653-110676898:+|1.4866182175502465|0.0317880289331355|5.55|151.0|54|1|anti-sense REV__Tigger1_dup5131|chr6:110675653-110676898:+|1.4866182175502465|0.0317880289331355|5.55|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.29296875 2 560.293956 1118.57336 NaN NaN NaN NaN NaN NaN NaN 42.076 1 45.316 44.816 45.816 3.2394 0 0 0 0.36505 1 8598 8598 7.2892 0.93513 1 + 12428 32461 7822 7828 15403 15403 0.01881618863035328 HNSRPPPNRMF 11 Unmodified _HNSRPPPNRMF_ 0 0 0 REV__MSTA_dup3745|chr3:150754145-150754552:-|1.1802927986770886|0.0223788910845006|5.72|151.0|20|2|anti-sense REV__MSTA_dup3745|chr3:150754145-150754552:-|1.1802927986770886|0.0223788910845006|5.72|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 451.2255859375 3 451.559534 1351.65677 NaN NaN NaN NaN NaN NaN NaN 35.115 1 38.379 37.879 38.879 3.2639 0 0 0 0.38417 1 6465 6465 0.40827 0 1 + 12429 31849 7823 7829 15404 15404 -0.004990127514474807 HNVIPSHASQN 11 Unmodified _HNVIPSHASQN_ 0 0 0 L1PA8A_dup358|chr2:202752918-202754509:+|2.944743264172071|0.0978995252439894|4.91|151.0|8|1|sense L1PA8A_dup358|chr2:202752918-202754509:+|2.944743264172071|0.0978995252439894|4.91|151.0|8|1|sense L1PA8A_dup358|chr2:202752918-202754509:+|2.944743264172071|0.0978995252439894|4.91|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 602.29638671875 2 602.296893 1202.57923 NaN NaN NaN NaN NaN NaN NaN 70.451 1 73.969 73.469 74.469 3.5185 0 0 0 0.38417 1 16301 16301 1.0715 0.5467 1 12430 14978 7824 7830 15405 15405 -0.013953274159575813 HNVLVKDTK 9 Unmodified _HNVLVKDTK_ 0 0 0 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 MSMS UPN48_class_I_Rep_2 6 527.3068237304688 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 97.763 1 101.54 101.04 102.04 3.779 0 0 0 0.3967 1 23224 23224 1.4819 0 1 12431 3548 7825 7831 15406 15406 0.07364834225882078 HNYFFKNGRMR 11 Unmodified _HNYFFKNGRMR_ 0 0 0 HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 490.57916259765625 3 490.578817 1468.71462 0.29237 0.00014343 0.22756 0.00011164 0.51993 0.00025507 490.57904211712355 14.345 0.64076 17.861 17.667 18.308 3.5156 150 87 2 0 0 0 0.68132 1 395 395 0.40827 0.041592 1 56826 12432 7942 7826 7832 15407 15407 -0.0009875082603230112 HNYFFKNGRMR 11 Unmodified _HNYFFKNGRMR_ 0 0 0 HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 490.578817 1468.71462 0.29237 0.00014343 0.22756 0.00011164 0.51993 0.00025507 490.57904211712355 14.345 0.64076 17.861 17.667 18.308 3.5156 -0.14007 -7.7858E-05 NaN 0.40827 150 87 2 NaN NaN NaN NaN 0 NaN NaN 0 56826 12433 7942 7826 7832 -0.0009875082603230112 HNYFFKNGRMR 11 Unmodified _HNYFFKNGRMR_ 0 0 0 HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|35|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 490.578817 1468.71462 0.11642 5.7112E-05 0.75667 0.00037121 0.87309 0.00042832 490.5791458370705 14.607 0.11677 18.141 18.106 18.223 3.5341 0.14007 0.00070085 NaN 0.40827 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 17379 12434 7942 7826 7832 -0.0009875082603230112 HNYLEPYR 8 Unmodified _HNYLEPYR_ 0 0 0 REV__ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron REV__ENSG00000104205.16,SGK3,chr8,+,I19.1,66847349,66850830|28|9.3|1|intron MSMS UPN47_class_I_Rep_2 3 546.2675170898438 2 546.267073 1090.51959 NaN NaN NaN NaN NaN NaN NaN 22.581 1 26.026 25.526 26.526 3.4447 0 0 0 0.40746 1 2703 2703 0.69038 0 1 + 12435 18250 7827 7833 15408 15408 -0.022045983593443452 HPALKQVLQYL 11 Unmodified _HPALKQVLQYL_ 0 0 0 L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|220|3|anti-sense L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|220|3|anti-sense L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|220|3|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2572937011719 3 437.259079 1308.75541 NaN NaN NaN NaN NaN NaN NaN 101.64 1 105.25 104.75 105.75 3.612 0 0 0 0.38417 1 24532 24532 2.4348 0.18206 1 12436 14017 7828 7834 15409 15409 0.1133791376530553 HPANFRIFF 9 Unmodified _HPANFRIFF_ 0 0 0 AluJo_dup5736|chr1:206052056-206052362:-|1.5968223063474247|0.0204233076796494|6.29|146.0|24|3|anti-sense AluJo_dup5736|chr1:206052056-206052362:-|1.5968223063474247|0.0204233076796494|6.29|146.0|24|3|anti-sense AluJo_dup5736|chr1:206052056-206052362:-|1.5968223063474247|0.0204233076796494|6.29|146.0|24|3|anti-sense MSMS UPN46_class_I_Rep_3 1 574.8030395507812 2 574.803626 1147.5927 NaN NaN NaN NaN NaN NaN NaN 68.47 1 68.47 67.97 68.97 0 0 0 0 0.39428 1 15637 15637 2.0598 0 1 12437 119 7829 7835 15410 15410 0.024805751539361154 HPAPARRIQ 9 Unmodified _HPAPARRIQ_ 0 0 0 REV__ENST00000599795.5_2_19:49559435-49561553:-|nuORF REV__ENST00000599795.5_2_19:49559435-49561553:-|nuORF MSMS UPN46_class_I_Rep_3 1 523.3036499023438 2 523.304324 1044.5941 NaN NaN NaN NaN NaN NaN NaN 95.373 1 95.373 94.873 95.873 0 0 0 0 0.35339 1 23153 23153 7.9102 0 1 + 12438 23209 7830 7836 15411 15411 0.0735820924271593 HPAPCCHCHCE 11 Unmodified _HPAPCCHCHCE_ 0 0 0 L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|25|2|sense L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|25|2|sense L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 618.7122192382812 2 618.711913 1235.40927 NaN NaN NaN NaN NaN NaN NaN 33.122 1 36.576 36.076 37.076 3.4547 0 0 0 0.38417 1 5827 5827 1.3295 0.5359 1 12439 13795 7831 7837 15412 15412 -0.1990154927752883 HPCCMCCC 8 Unmodified _HPCCMCCC_ 0 0 0 L1ME1_dup3632|chr2:88045156-88045689:+|1.177956139830712|0.0984713510519942|3.58|151.0|30|1|anti-sense L1ME1_dup3632|chr2:88045156-88045689:+|1.177956139830712|0.0984713510519942|3.58|151.0|30|1|anti-sense L1ME1_dup3632|chr2:88045156-88045689:+|1.177956139830712|0.0984713510519942|3.58|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_2 6 450.1131591796875 2 450.1116 898.208647 NaN NaN NaN NaN NaN NaN NaN 120 1 123.66 123.16 124.16 3.6595 0 0 0 0.40798 1 28801 28801 0 0 1 12440 12400 7832 7838 15413 15413 -0.2445285819021592 HPCRPAVVLG 10 Unmodified _HPCRPAVVLG_ 0 0 0 ENST00000264956.10_2_4:5815433-5815706:+|nuORF ENST00000264956.10_2_4:5815433-5815706:+|nuORF ENST00000264956.10_2_4:5815433-5815706:+|nuORF MSMS UPN47_class_I_Rep_3 4 524.7881469726562 2 524.789661 1047.56477 NaN NaN NaN NaN NaN NaN NaN 46.242 1 49.486 48.986 49.986 3.2439 0 0 0 0.53105 1 9875 9875 3.5965 0.60125 1 12441 5993 7833 7839 15414 15414 0.042889289022014054 HPCYCKYFF 9 Unmodified _HPCYCKYFF_ 0 0 0 L1PA16_dup13280|chr19:29974586-29975269:-|1.0120376935912847|0.0207471315449692|5.61|150.0|40|3|anti-sense L1PA16_dup13280|chr19:29974586-29975269:-|1.0120376935912847|0.0207471315449692|5.61|150.0|40|3|anti-sense L1PA16_dup13280|chr19:29974586-29975269:-|1.0120376935912847|0.0207471315449692|5.61|150.0|40|3|anti-sense MSMS UPN48_class_I_Rep_2 6 604.2572021484375 2 604.256805 1206.49906 NaN NaN NaN NaN NaN NaN NaN 111.67 1 115.33 114.83 115.83 3.6666 0 0 0 0.40038 1 26567 26567 0.6015 0 1 12442 14049 7834 7840 15415 15415 -0.0959322833502938 HPDLVAAF 8 Unmodified _HPDLVAAF_ 0 0 0 nc|ENSG00000166343|Q4VC12-2|MSS51;ENSG00000166343|ENST00000299432|MSS51 nc|ENSG00000166343|Q4VC12-2|MSS51 nc|ENSG00000166343|Q4VC12-2|MSS51 MSMS UPN48_class_I_Rep_1 5 435.22882080078125 2 435.229428 868.444303 NaN NaN NaN NaN NaN NaN NaN 36.789 1 40.296 39.796 40.796 3.507 0 0 0 0.40738 1 6180 6180 0.79363 0 1 12443 4234 7835 7841 15416 15416 0.0048184418022856335 HPEDITIINI 10 Unmodified _HPEDITIINI_ 0 0 0 L1MB4_dup7383|chr16:47095168-47096730:+|1.2118221087914487|0.0401204297879155|4.92|150.0|6|1|sense L1MB4_dup7383|chr16:47095168-47096730:+|1.2118221087914487|0.0401204297879155|4.92|150.0|6|1|sense L1MB4_dup7383|chr16:47095168-47096730:+|1.2118221087914487|0.0401204297879155|4.92|150.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.817138671875 2 582.816596 1163.61864 0.5553 0.00032364 -0.0066637 -3.8837E-06 0.54863 0.00031975 582.8164938857387 68.867 0.36781 72.376 72.254 72.622 3.5094 41 25 2 0 0 0 0.4965 1 15860 15860 12.241 0.74595 1 236310 12444 10568 7836 7842 15417 15417 0.043373798149104914 HPELIDAA 8 Unmodified _HPELIDAA_ 0 0 0 ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103436847-103443499:-|nuORF ENST00000460338.5_1_13:103436847-103443499:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 432.8851623535156 2 433.224342 864.434132 0.14049 6.0863E-05 -0.38662 -0.00016749 -0.24613 -0.00010663 433.22409725164 109.26 0.177 112.86 112.78 112.96 3.6046 37 22 2 0 0 0 0.72333 1 26962 26962 2.3027 0 1 2299500 12445 2875 7837 7843 15418 15418 -0.003507635450091584 HPELIDAA 8 Unmodified _HPELIDAA_ 0 0 0 ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103436847-103443499:-|nuORF ENST00000460338.5_1_13:103436847-103443499:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 433.224342 864.434132 -0.20433 -8.852E-05 -0.22882 -9.9132E-05 -0.43315 -0.00018765 433.22416139070066 109.26 0.17345 112.79 112.72 112.89 3.5307 -0.064757 2.2087E-05 NaN 2.3027 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1970500 12446 2875 7837 7843 -0.003507635450091584 HPELIDAA 8 Unmodified _HPELIDAA_ 0 0 0 ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103436847-103443499:-|nuORF ENST00000460338.5_1_13:103436847-103443499:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 433.224342 864.434132 -0.37069 -0.00016059 -0.18086 -7.8352E-05 -0.55155 -0.00023895 433.2242046635928 109.27 0.24706 112.8 112.68 112.93 3.5347 -0.054661 6.3646E-05 NaN 2.3027 47 32 2 NaN NaN NaN NaN 0 NaN NaN 0 2401000 12447 2875 7837 7843 -0.003507635450091584 HPELIDAA 8 Unmodified _HPELIDAA_ 0 0 0 ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103436847-103443499:-|nuORF ENST00000460338.5_1_13:103436847-103443499:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 433.224342 864.434132 -0.066295 -2.872E-05 -0.099701 -4.3193E-05 -0.166 -7.1913E-05 433.22427445615403 109.22 0.31364 112.85 112.78 113.09 3.6321 -0.0091691 0.00013397 NaN 2.3027 55 38 2 NaN NaN NaN NaN 0 NaN NaN 0 2042600 12448 2875 7837 7843 -0.003507635450091584 HPELIDAA 8 Unmodified _HPELIDAA_ 0 0 0 ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103436847-103443499:-|nuORF ENST00000460338.5_1_13:103436847-103443499:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 433.224342 864.434132 0.095971 4.1577E-05 -0.38089 -0.00016501 -0.28492 -0.00012343 433.2241382354109 109.26 0.18896 112.94 112.85 113.04 3.6715 0.078529 -0.00010967 NaN 2.3027 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2822300 12449 2875 7837 7843 -0.003507635450091584 HPELIDAA 8 Unmodified _HPELIDAA_ 0 0 0 ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103436847-103443499:-|nuORF ENST00000460338.5_1_13:103436847-103443499:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 433.224342 864.434132 0.13371 5.7927E-05 -0.33507 -0.00014516 -0.20136 -8.7233E-05 433.22414792248816 109.23 0.15565 112.9 112.86 113.01 3.6751 0.047049 -6.9969E-05 NaN 2.3027 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2307500 12450 2875 7837 7843 -0.003507635450091584 HPFALTQQ 8 Unmodified _HPFALTQQ_ 0 0 0 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 MSMS UPN48_class_I_Rep_1 5 470.77264404296875 2 471.245609 940.476666 NaN NaN NaN NaN NaN NaN NaN 74.815 1 78.305 77.805 78.805 3.49 0 0 0 0.40738 1 17695 17695 0.79363 0 1 12451 2855 7838 7844 15419 15419 0.004046315832169967 HPFFYLFF 8 Unmodified _HPFFYLFF_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|175|3|anti-sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|175|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.2808227539062 2 559.278921 1116.54329 0.53643 0.00030002 -0.82991 -0.00046415 -0.29347 -0.00016413 559.7798327522802 66.886 0.37136 70.338 70.138 70.509 3.4516 26 22 2 0 0 0 0.82752 1 15318 15318 11.114 3.2043 1 71692 + 12452 27705 7839 7845 15420 15420 -0.010321328548570818 HPFHPSPTY 9 Unmodified _HPFHPSPTY_ 0 0 0 L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|78|2|anti-sense L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|78|2|anti-sense L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_1 2 541.7548217773438 2 541.756341 1081.49813 NaN NaN NaN NaN NaN NaN NaN 75.195 1 78.599 78.099 79.099 3.4034 0 0 0 0.2088 1 18548 18548 15.847 6.4641 1 12453 11499 7840 7846 15421 15421 -0.0393598338805532 HPFLSDWS 8 Unmodified _HPFLSDWS_ 0 0 0 L1MA2_dup2772|chr6:156222125-156226996:+|2.1151822724523983|0.0124021787126795|7.41|151.0|210|1|anti-sense L1MA2_dup2772|chr6:156222125-156226996:+|2.1151822724523983|0.0124021787126795|7.41|151.0|210|1|anti-sense L1MA2_dup2772|chr6:156222125-156226996:+|2.1151822724523983|0.0124021787126795|7.41|151.0|210|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.71868896484375 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 114.92 1 118.42 117.92 118.92 3.5039 0 0 0 0.40738 1 28001 28001 0.79363 0 1 12454 9356 7841 7847 15422 15422 -0.04919361170709635 HPFMLLWLL 9 Unmodified _HPFMLLWLL_ 0 0 0 ENST00000474612.1_1_6:32164788-32165290:-|nuORF ENST00000474612.1_1_6:32164788-32165290:-|nuORF ENST00000474612.1_1_6:32164788-32165290:-|nuORF MSMS UPN48_class_I_Rep_1 5 585.3306274414062 2 585.33063 1168.64671 NaN NaN NaN NaN NaN NaN NaN 71.74 1 75.206 74.706 75.706 3.466 0 0 0 0.40038 1 16794 16794 0.6015 0 1 12455 6951 7842 7848 15423 15423 0.06913031261296965 HPFVPIAPPF 10 Unmodified _HPFVPIAPPF_ 0 0 0 REV__L1MB5_dup3511|chr8:67208769-67209600:+|6.247617975500341|0.4429782891717076|3.82|151.0|53|3|anti-sense REV__L1MB5_dup3511|chr8:67208769-67209600:+|6.247617975500341|0.4429782891717076|3.82|151.0|53|3|anti-sense MSMS UPN46_class_I_Rep_3 1 561.31103515625 2 561.310752 1120.60695 NaN NaN NaN NaN NaN NaN NaN 59.953 1 59.953 59.453 60.453 0 0 0 0 0.53105 1 13280 13280 1.8442 0 1 + 12456 26056 7843 7849 15424 15424 0.051472275822106894 HPFYRWAM 8 Unmodified _HPFYRWAM_ 0 0 0 REV__THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|68|2|anti-sense REV__THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|68|2|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1765747070312 2 554.263279 1106.51201 NaN NaN NaN NaN NaN NaN NaN 113.96 1 117.62 117.12 118.12 3.663 0 0 0 0.40738 1 27216 27216 0.79363 0 1 + 12457 32214 7844 7850 15425 15425 -0.03699029160611644 HPGEEQLGEE 10 Unmodified _HPGEEQLGEE_ 0 0 0 HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|222|2|anti-sense HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|222|2|anti-sense HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|222|2|anti-sense MSMS UPN46_class_I_Rep_3 1 562.7715454101562 2 562.746367 1123.47818 NaN NaN NaN NaN NaN NaN NaN 14.646 1 14.646 14.146 15.146 0 0 0 0 0.53105 1 684 684 1.6526 0.58116 1 12458 8163 7845 7851 15426 15426 -0.07861823909297527 HPGPFGFF 8 Unmodified _HPGPFGFF_ 0 0 0 REV__MER30_dup3659|chr17:29674688-29674931:-|1.1527336603022718|0.0826373198259507|3.8|151.0|12|2|anti-sense REV__MER30_dup3659|chr17:29674688-29674931:-|1.1527336603022718|0.0826373198259507|3.8|151.0|12|2|anti-sense MSMS UPN47_class_I_Rep_1 2 453.23089599609375 2 453.218863 904.423173 NaN NaN NaN NaN NaN NaN NaN 27.834 1 31.6 31.1 32.1 3.7662 0 0 0 0.40738 1 4201 4201 0.79363 0 1 + 12459 31252 7846 7852 15427 15427 -0.03286121128610375 HPGPVRRR 8 Unmodified _HPGPVRRR_ 0 0 0 REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF MSMS UPN47_class_I_Rep_3 4 487.791015625 2 487.791384 973.568215 NaN NaN NaN NaN NaN NaN NaN 76.898 1 80.167 79.667 80.667 3.269 0 0 0 0.40738 1 19133 19133 0.79363 0 1 + 12460 23181 7847 7853 15428 15428 0.0803735979108069 HPGRVPLIL 9 Unmodified _HPGRVPLIL_ 0 0 0 ENSG00000125686|ENST00000300651|MED1;MED1|p.F398I|1|0.15|ENSG00000125686|chr17:39419822-39419822|A/T|missense_variant;nc|ENSG00000125686|Q15648-3|MED1 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 MULTI-SECPEP UPN48_class_I_Rep_1 5 500.8288879394531 2 501.316369 1000.61818 0.24153 0.00012108 -1.202 -0.00060257 -0.96044 -0.00048148 501.3157852232206 69.774 0.13837 73.234 73.119 73.257 3.4598 9 8 2 0 0 0 0.11705 1 16195 16195 10.824 2.2306 1 39276 12461 2510 7848 7854 15429 15429 0.11790049676380931 HPHAAENKF 9 Unmodified _HPHAAENKF_ 0 0 0 REV__LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|64|1|anti-sense REV__LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_2 3 525.7579956054688 2 525.759415 1049.50428 NaN NaN NaN NaN NaN NaN NaN 22.78 1 26.225 25.725 26.725 3.4447 0 0 0 0.39326 1 2759 2759 2.3027 0 1 + 12462 30816 7849 7855 15430 15430 -0.01849465156556107 HPHKKLIY 8 Unmodified _HPHKKLIY_ 0 0 0 L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|118|3|sense L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|118|3|sense L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|118|3|sense MSMS UPN46_class_I_Rep_3 1 518.30859375 2 518.308544 1034.60253 NaN NaN NaN NaN NaN NaN NaN 28.523 1 28.523 28.023 29.023 0 0 0 0 0.40746 1 4391 4391 0.69038 0.088878 1 12463 14307 7850 7856 15431 15431 0.08661763159329894 HPHLSLMRTW 10 Unmodified _HPHLSLMRTW_ 0 0 0 L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|34|3|anti-sense L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|34|3|anti-sense L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_1 2 639.3321533203125 2 639.332224 1276.6499 NaN NaN NaN NaN NaN NaN NaN 63.509 1 66.869 66.369 67.369 3.3595 0 0 0 0.53105 1 15031 15031 0.45834 0 1 12464 11856 7851 7857 15432 15432 0.022636743680095606 HPHPIIPV 8 Unmodified _HPHPIIPV_ 0 0 0 REV__L1MB3_dup1868|chr2:69610074-69611028:+|1.048068550495648|0.0162410735607723|6.01|151.0|61|3|anti-sense REV__L1MB3_dup1868|chr2:69610074-69611028:+|1.048068550495648|0.0162410735607723|6.01|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 455.2670593261719 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 30.851 1 34.333 33.833 34.833 3.4821 0 0 0 0.40581 1 5144 5144 2.8892 0 1 + 12465 25856 7852 7858 15433 15433 0.06530116205181002 HPIFQKTR 8 Unmodified _HPIFQKTR_ 0 0 0 REV__LTR40b_dup9|chr1:50942586-50943091:-|1.163176355464448|0.0131392519833835|6.47|151.0|26|2|anti-sense REV__LTR40b_dup9|chr1:50942586-50943091:-|1.163176355464448|0.0131392519833835|6.47|151.0|26|2|anti-sense MSMS UPN46_class_I_Rep_3 1 513.7958374023438 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 83.048 1 83.048 82.548 83.548 0 0 0 0 0.40738 1 19703 19703 0.79363 0 1 + 12466 30917 7853 7859 15434 15434 0.0652828863690047 HPIHLFIQLFI 11 Unmodified _HPIHLFIQLFI_ 0 0 0 L1MC4a_dup769|chr2:26079959-26080444:+|1.146913072201844|0.0213810540041217|5.75|151.0|32|3|anti-sense L1MC4a_dup769|chr2:26079959-26080444:+|1.146913072201844|0.0213810540041217|5.75|151.0|32|3|anti-sense L1MC4a_dup769|chr2:26079959-26080444:+|1.146913072201844|0.0213810540041217|5.75|151.0|32|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 459.6652526855469 3 459.939569 1376.79688 0.032842 1.5105E-05 0.40195 0.00018487 0.43479 0.00019998 460.2737506605509 47.923 0.42206 51.445 51.189 51.611 3.5219 38 29 2 0 0 0 22.551 1 9547 9547 0.50596 0 1 70067 12467 11613 7854 7860 15435 15435 0.12355094524605192 HPIKKVLYFKW 11 Unmodified _HPIKKVLYFKW_ 0 0 0 REV__L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|65|1|anti-sense REV__L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|65|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.9588317871094 3 486.958852 1457.85473 0.23435 0.00011412 -0.090621 -4.4129E-05 0.14373 6.999E-05 486.95877257770843 106.06 0.45557 109.76 109.56 110.02 3.702 92 66 2 0 0 0 0.68081 1 25023 25023 0.45452 0.35968 1 217990 + 12468 28373 7855 7861 15436 15436 0.1441135645002305 HPIVWICHVLF 11 Unmodified _HPIVWICHVLF_ 0 0 0 L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|45|2|anti-sense L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|45|2|anti-sense L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_3 7 455.24859619140625 3 455.249638 1362.72708 NaN NaN NaN NaN NaN NaN NaN 54.012 1 57.584 57.084 58.084 3.5724 0 0 0 0.38417 1 11313 11313 1.4551 0.12547 1 12469 10767 7856 7862 15437 15437 0.06022892584337569 HPKGKLRA 8 Unmodified _HPKGKLRA_ 0 0 0 REV__ENST00000258083.2_1_2:73455291-73455504:-|nuORF REV__ENST00000258083.2_1_2:73455291-73455504:-|nuORF MSMS UPN47_class_I_Rep_2 3 453.773681640625 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 25.047 1 28.53 28.03 29.03 3.483 0 0 0 0.40604 1 3420 3420 2.5775 0 1 + 12470 21540 7857 7863 15438 15438 0.0993632332802008 HPKINNNSSVQ 11 Unmodified _HPKINNNSSVQ_ 0 0 0 L1PB1_dup11231|chr15:30742409-30744194:+|1.2241396753162652|0.0215961777156386|5.82|151.0|127|3|anti-sense L1PB1_dup11231|chr15:30742409-30744194:+|1.2241396753162652|0.0215961777156386|5.82|151.0|127|3|anti-sense L1PB1_dup11231|chr15:30742409-30744194:+|1.2241396753162652|0.0215961777156386|5.82|151.0|127|3|anti-sense MSMS UPN48_class_I_Rep_3 7 619.3182373046875 2 619.317825 1236.6211 NaN NaN NaN NaN NaN NaN NaN 67.32 1 70.828 70.328 71.328 3.5077 0 0 0 0.38417 1 15360 15360 3.2813 0.78282 1 12471 15015 7858 7864 15439 15439 0.01225228272573986 HPKKIWVG 8 Unmodified _HPKKIWVG_ 0 0 0 L1ME1_dup1473|chr1:147971789-147972661:-|1.1444872003917648|0.0480229247671336|4.57|151.0|22|3|sense;L1ME1_dup1453|chr1:145649113-145649986:-|1.1374294696155232|0.0501975199229743|4.5|151.0|21|3|sense L1ME1_dup1473|chr1:147971789-147972661:-|1.1444872003917648|0.0480229247671336|4.57|151.0|22|3|sense L1ME1_dup1473|chr1:147971789-147972661:-|1.1444872003917648|0.0480229247671336|4.57|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 482.7901916503906 2 482.789987 963.565421 NaN NaN NaN NaN NaN NaN NaN 21.314 1 24.962 24.462 25.462 3.648 0 0 0 0.40738 1 1990 1990 0.79363 0.10326 1 12472 12224 7859 7865 15440 15440 0.08218091613559864 HPKLIKGL 8 Unmodified _HPKLIKGL_ 0 0 0 REV__ENST00000422939.1_1_8:116649485-116821871:-|nuORF REV__ENST00000422939.1_1_8:116649485-116821871:-|nuORF MSMS UPN47_class_I_Rep_1 2 453.2987365722656 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 24.378 1 28.108 27.608 28.608 3.7298 0 0 0 0.39819 1 3175 3175 8.5933 0 1 + 12473 22246 7860 7866 15441 15441 0.12971262273367756 HPKLKCKGS 9 Unmodified _HPKLKCKGS_ 0 0 0 REV__L1MA8_dup1878|chr3:128776585-128776945:-|1.5791439916043386|0.0046960613112685|8.39|151.0|11|3|sense REV__L1MA8_dup1878|chr3:128776585-128776945:-|1.5791439916043386|0.0046960613112685|8.39|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 499.2822570800781 2 499.284211 996.55387 NaN NaN NaN NaN NaN NaN NaN 47.506 1 50.746 50.246 51.246 3.2405 0 0 0 0.39518 1 10257 10257 1.8442 1.1539 1 + 12474 25538 7861 7867 15442 15442 0.055455265279192645 HPKLMEVKRF 10 Unmodified _HPKLMEVKRF_ 0 0 0 REV__nc|ENSG00000005844|P20701-3|ITGAL REV__nc|ENSG00000005844|P20701-3|ITGAL MSMS UPN46_class_I_Rep_3 1 642.8675537109375 2 642.8659 1283.71725 NaN NaN NaN NaN NaN NaN NaN 54.013 1 54.013 53.513 54.513 0 0 0 0 0.53105 1 11665 11665 1.3295 0 1 + 12475 17531 7862 7868 15443 15443 0.08673704578950492 HPKRKKYY 8 Unmodified _HPKRKKYY_ 0 0 0 REV__L1M5_dup6675|chr2:127790137-127790599:-|1.1049979260825962|0.0227677620983761|5.6|151.0|2|1|sense REV__L1M5_dup6675|chr2:127790137-127790599:-|1.1049979260825962|0.0227677620983761|5.6|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 560.3224487304688 2 560.324725 1118.6349 NaN NaN NaN NaN NaN NaN NaN 89.969 1 89.969 89.469 90.469 0 0 0 0 0.40738 1 21673 21673 0.79363 0 1 + 12476 24705 7863 7869 15444 15444 0.08032550562325014 HPKWPFKKK 9 Unmodified _HPKWPFKKK_ 0 0 0 nc|ENSG00000163378|Q5NDL2-3|EOGT;ENSG00000163378|ENST00000383701|EOGT nc|ENSG00000163378|Q5NDL2-3|EOGT nc|ENSG00000163378|Q5NDL2-3|EOGT MSMS UPN48_class_I_Rep_1 5 598.3583984375 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 95.733 1 99.346 98.846 99.846 3.6124 0 0 0 0.40038 1 23062 23062 0.6015 0 1 12477 3998 7864 7870 15445 15445 0.11302000493105879 HPLEGKERK 9 Unmodified _HPLEGKERK_ 0 0 0 REV__MSTA_dup13072|chr10:75574846-75575253:-|2.379446153768059|0.0072106788020865|8.37|149.0|22|3|anti-sense REV__MSTA_dup13072|chr10:75574846-75575253:-|2.379446153768059|0.0072106788020865|8.37|149.0|22|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3112182617188 2 547.309272 1092.60399 NaN NaN NaN NaN NaN NaN NaN 109.19 1 112.82 112.32 113.32 3.6321 0 0 0 0.38299 1 26503 26503 4.756 0.81161 1 + 12478 31840 7865 7871 15446 15446 0.0613935245742141 HPLIKLRD 8 Unmodified _HPLIKLRD_ 0 0 0 ERVL-E-int_dup315|chr1:84537178-84538808:+|4.460123567141673|0.1357230369868221|5.04|151.0|5|1|sense REV__L1MC4_dup20185|chr15:56973335-56974466:+|1.30140308525759|0.0155545765487621|6.39|151.0|35|3|sense REV__L1MC4_dup20185|chr15:56973335-56974466:+|1.30140308525759|0.0155545765487621|6.39|151.0|35|3|sense MSMS UPN46_class_I_Rep_3 1 496.3041076660156 2 496.306001 990.597449 NaN NaN NaN NaN NaN NaN NaN 91.451 1 91.451 90.951 91.951 0 0 0 0 0.40604 1 22092 22092 2.5775 0 1 12479 7749 7866 7872 15447 15447 0.1017745929668763 HPLKTPFLWS 10 Unmodified _HPLKTPFLWS_ 0 0 0 ENST00000470800.1_1_21:30517986-30521557:+|nuORF ENST00000470800.1_1_21:30517986-30521557:+|nuORF ENST00000470800.1_1_21:30517986-30521557:+|nuORF MSMS UPN46_class_I_Rep_3 1 613.3411254882812 2 613.340041 1224.66553 NaN NaN NaN NaN NaN NaN NaN 68.68 1 68.68 68.18 69.18 0 0 0 0 0.53105 1 15695 15695 1.4819 0 1 12480 6920 7867 7873 15448 15448 0.062182841566936986 HPLLKAVK 8 Unmodified _HPLLKAVK_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENSG00000152223.15,EPG5,chr18,-,I9.1,45939756,45943160|31|4.98|2|intron;ENST00000587974.1_1_18:43487913-43547205:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MSMS UPN47_class_I_Rep_1 2 453.3001403808594 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 24.339 1 28.069 27.569 28.569 3.7298 0 0 0 0.40404 1 3163 3163 5.2307 0 1 12481 3616 7868 7874 15449 15449 0.12971262273367756 HPLLKAVK 8 Unmodified _HPLLKAVK_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENSG00000152223.15,EPG5,chr18,-,I9.1,45939756,45943160|31|4.98|2|intron;ENST00000587974.1_1_18:43487913-43547205:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS UPN47_class_I_Rep_2 3 453.2994079589844 2 453.300188 904.585822 -0.52141 -0.00023635 -0.026558 -1.2039E-05 -0.54797 -0.00024839 453.2999827294603 24.873 0.60489 28.356 27.907 28.512 3.483 69 51 2 0 0 0 0.82752 1 3326 3326 2.5775 0 1 42548 12482 3616 7868 7874 15450 15450 0.12971262273367756 HPLLLELQP 9 Unmodified _HPLLLELQP_ 0 0 0 nc|ENSG00000162746|Q6BAA4-3|FCRLB;nc|ENSG00000162746|Q6BAA4-2|FCRLB;nc|ENSG00000162746|Q6BAA4-5|FCRLB;nc|ENSG00000162746|Q6BAA4-4|FCRLB;ENSG00000162746|ENST00000367948|FCRLB nc|ENSG00000162746|Q6BAA4-3|FCRLB nc|ENSG00000162746|Q6BAA4-3|FCRLB MSMS UPN48_class_I_Rep_1 5 530.3133544921875 2 530.313492 1058.61243 NaN NaN NaN NaN NaN NaN NaN 29.665 1 33.214 32.714 33.714 3.5499 0 0 0 0.39598 1 4157 4157 1.6526 0 1 12483 3957 7869 7875 15451 15451 0.08546906374044738 HPLRHSTF 8 Unmodified _HPLRHSTF_ 0 0 0 REV__nc|ENSG00000130558|Q99784-5|OLFM1 REV__nc|ENSG00000130558|Q99784-5|OLFM1 MSMS UPN46_class_I_Rep_3 1 497.85595703125 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 69.402 1 69.402 68.902 69.902 0 0 0 0 0.40581 1 15901 15901 2.8892 0 1 + 12484 18942 7870 7876 15452 15452 0.01743142568705025 HPLRRFPFTAI 11 Unmodified _HPLRRFPFTAI_ 0 0 0 HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|191|3|anti-sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|191|3|anti-sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|191|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.2635803222656 3 452.262935 1353.76697 0.15067 6.8141E-05 0.11643 5.2657E-05 0.2671 0.0001208 452.26302629029584 59.883 0.56036 63.399 63.296 63.857 3.5169 89 47 3 0 0 0 0.68024 1 13178 13178 0.50596 0 1 189960 12485 8373 7871 7877 15453 15453 0.1042415557926688 HPLTRWALQ 9 Unmodified _HPLTRWALQ_ 0 0 0 ENST00000491584.1_1_1:202127224-202129680:-|nuORF;ENST00000492977.5_1_1:202119404-202127449:-|nuORF;ENSG00000143851|ENST00000691036|PTPN7;nc|ENSG00000143851|P35236-2|PTPN7;nc|ENSG00000143851|P35236-3|PTPN7 ENST00000491584.1_1_1:202127224-202129680:-|nuORF ENST00000491584.1_1_1:202127224-202129680:-|nuORF MSMS UPN48_class_I_Rep_3 7 561.3121948242188 2 561.314358 1120.61416 NaN NaN NaN NaN NaN NaN NaN 60.576 1 64.089 63.589 64.589 3.5129 0 0 0 0.38299 1 13321 13321 4.756 0.42677 1 12486 3331 7872 7878 15454 15454 0.058679601826497674 HPLVSSCYLL 10 Unmodified _HPLVSSCYLL_ 0 0 0 L1MB2_dup4434|chr9:88464745-88465686:-|1.3290793412676245|0.1668861560005111|2.99|151.0|52|2|anti-sense L1MB2_dup4434|chr9:88464745-88465686:-|1.3290793412676245|0.1668861560005111|2.99|151.0|52|2|anti-sense L1MB2_dup4434|chr9:88464745-88465686:-|1.3290793412676245|0.1668861560005111|2.99|151.0|52|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.2972412109375 2 566.296985 1130.57942 0.38741 0.00021939 -0.41598 -0.00023557 -0.028571 -1.618E-05 566.2967752397918 56.71 0.36153 59.882 59.655 60.017 3.1721 31 20 2 0 0 0 0.52083 1 13033 13033 9.3831 2.0939 1 82837 12487 10247 7873 7879 15455 15455 0.019349562596971737 HPPEHRYDW 9 Unmodified _HPPEHRYDW_ 0 0 0 REV__AluJr4_dup11551|chr10:824211-824494:+|1.9837085679641664|0.3569482662740282|2.47|151.0|23|3|anti-sense REV__AluJr4_dup11551|chr10:824211-824494:+|1.9837085679641664|0.3569482662740282|2.47|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 618.7796020507812 2 618.780879 1235.5472 0.31684 0.00019605 -0.95595 -0.00059152 -0.63911 -0.00039547 618.7802397967068 51.215 0.40796 54.808 54.658 55.066 3.5932 26 19 2 0 0 0 0.49026 1 11305 11305 1.6526 0.17072 1 79241 + 12488 16916 7874 7880 15456 15456 -0.06114695099108758 HPPEMLLFFA 10 Unmodified _HPPEMLLFFA_ 0 0 0 REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|191|3|anti-sense REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|191|3|anti-sense MSMS UPN48_class_I_Rep_1 5 601.3067016601562 2 601.307352 1200.60015 NaN NaN NaN NaN NaN NaN NaN 113.2 1 116.83 116.33 117.33 3.6314 0 0 0 0.53105 1 27497 27497 1.6526 0.17072 1 + 12489 17259 7875 7881 15457 15457 0.00787546639367065 HPPGKGINH 9 Unmodified _HPPGKGINH_ 0 0 0 REV__L1MB4_dup6195|chr12:2846885-2847376:-|2.856211854753973|0.2631122500642578|3.44|151.0|9|2|sense REV__L1MB4_dup6195|chr12:2846885-2847376:-|2.856211854753973|0.2631122500642578|3.44|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.7563171386719 2 478.756675 955.498798 -0.38637 -0.00018498 -0.26946 -0.000129 -0.65583 -0.00031398 478.75645188982963 12.054 0.13156 15.504 15.448 15.58 3.45 27 17 2 0 0 0 0.46434 1 23 23 4.3292 0 1 30828 + 12490 25992 7876 7882 15458 15458 0.019268560516479738 HPPHLVLP 8 Unmodified _HPPHLVLP_ 0 0 0 REV__MER34D_dup132|chr9:90891959-90892531:-|2.787657107025208|0.1004455894301983|4.79|151.0|12|2|sense REV__MER34D_dup132|chr9:90891959-90892531:-|2.787657107025208|0.1004455894301983|4.79|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 455.26715087890625 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 30.982 1 34.294 33.794 34.794 3.3116 0 0 0 0.40738 1 5220 5220 0.79363 0 1 + 12491 31270 7877 7883 15459 15459 0.06530116205169634 HPPLTLVLPH 10 Unmodified _HPPLTLVLPH_ 0 0 0 REV__ENST00000567034.5_1_16:30198826-30199264:+|nuORF REV__ENST00000567034.5_1_16:30198826-30199264:+|nuORF MSMS UPN48_class_I_Rep_1 5 562.334716796875 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 108.99 1 112.62 112.12 113.12 3.6321 0 0 0 0.53105 1 26435 26435 6.7232 0 1 + 12492 23068 7878 7884 15460 15460 0.09854301502264207 HPPLTPFH 8 Unmodified _HPPLTPFH_ 0 0 0 ENST00000329608.10_2_1:110471767-110471860:+|nuORF ENST00000329608.10_2_1:110471767-110471860:+|nuORF ENST00000329608.10_2_1:110471767-110471860:+|nuORF MSMS UPN46_class_I_Rep_3 1 473.2595520019531 2 473.250695 944.486836 NaN NaN NaN NaN NaN NaN NaN 54.532 1 54.532 54.032 55.032 0 0 0 0 0.4032 1 11812 11812 6.3541 0 1 12493 6179 7879 7885 15461 15461 0.012372393084660871 HPPPEKLQ 8 Unmodified _HPPPEKLQ_ 0 0 0 ENST00000489671.5_2_3:141668120-141668426:-|nuORF ENST00000489671.5_2_3:141668120-141668426:-|nuORF ENST00000489671.5_2_3:141668120-141668426:-|nuORF MSMS UPN47_class_I_Rep_2 3 473.2594299316406 2 473.261259 944.507966 NaN NaN NaN NaN NaN NaN NaN 50.884 1 54.222 53.722 54.722 3.3386 0 0 0 0.40581 1 11224 11224 2.8892 0.58649 1 12494 7059 7880 7886 15462 15462 0.033492046173250856 HPPPLADPYI 10 Unmodified _HPPPLADPYI_ 0 0 0 REV__L1PA10_dup6187|chr16:47703656-47704493:+|1.246817646388266|0.0141703745738326|6.46|151.0|43|2|anti-sense REV__L1PA10_dup6187|chr16:47703656-47704493:+|1.246817646388266|0.0141703745738326|6.46|151.0|43|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.7975463867188 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.51003 1 16245 16245 10.824 0.75 1 271980 + 12495 28978 7881 7887 15463 15463 0.021500294773204587 HPPSHFWSPF 10 Unmodified _HPPSHFWSPF_ 0 0 0 REV__L1PA3_dup7864|chr11:14844352-14850498:+|3.566494696966521|0.2904596827084137|3.62|151.0|275|2|anti-sense REV__L1PA3_dup7864|chr11:14844352-14850498:+|3.566494696966521|0.2904596827084137|3.62|151.0|275|2|anti-sense MSMS UPN48_class_I_Rep_3 7 619.7899780273438 2 619.790715 1237.56688 NaN NaN NaN NaN NaN NaN NaN 66.886 1 70.394 69.894 70.894 3.5077 0 0 0 0.53105 1 15227 15227 1.6526 0.17072 1 + 12496 29572 7882 7888 15464 15464 -0.04240319088353317 HPPSSRWK 8 Unmodified _HPPSSRWK_ 0 0 0 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 MSMS UPN48_class_I_Rep_3 7 497.7646484375 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 29.206 1 32.935 32.435 33.435 3.7286 0 0 0 0.40746 1 4069 4069 0.69038 0 1 12497 1873 7883 7889 15465 15465 0.01743142568705025 HPPTPKRRG 9 Unmodified _HPPTPKRRG_ 0 0 0 nc|ENSG00000268916|Q9Y5P2-3|CSAG2;ENST00000370292.3_X:151928021-151928425:+|nuORF;ENSG00000268916|ENST00000599845|CSAG3;ENSG00000268902|ENST00000638741|CSAG2 nc|ENSG00000268916|Q9Y5P2-3|CSAG2 nc|ENSG00000268916|Q9Y5P2-3|CSAG2 MSMS UPN46_class_I_Rep_3 1 523.3040771484375 2 523.304324 1044.5941 NaN NaN NaN NaN NaN NaN NaN 95.515 1 95.515 95.015 96.015 0 0 0 0 0.38639 1 23193 23193 3.9444 0 1 12498 5806 7884 7890 15466 15466 0.0735820924271593 HPQCMFLEYL 10 Unmodified _HPQCMFLEYL_ 0 0 0 L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|183|3|anti-sense L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|183|3|anti-sense L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|183|3|anti-sense MSMS UPN47_class_I_Rep_2 3 640.7926025390625 2 640.793752 1279.57295 NaN NaN NaN NaN NaN NaN NaN 76.121 1 79.443 78.943 79.943 3.3216 0 0 0 0.53105 1 18831 18831 3.5965 0.31518 1 12499 9923 7885 7891 15467 15467 -0.05565304963329254 HPQINQRLK 9 Unmodified _HPQINQRLK_ 0 0 0 nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6 nc|ENSG00000110693|P35712-3|SOX6 nc|ENSG00000110693|P35712-3|SOX6 MSMS UPN46_class_I_Rep_3 1 567.3310546875 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 99.048 1 99.048 98.548 99.548 0 0 0 0 0.39518 1 24121 24121 1.8442 0 1 12500 1946 7886 7892 15468 15468 0.08550747585650242 HPRDEEDLL 9 Unmodified _HPRDEEDLL_ 0 0 0 L1PA6_dup2751|chr7:37153167-37159311:+|3.454159174407832|0.0393138219556515|6.46|151.0|261|2|anti-sense L1PA6_dup2751|chr7:37153167-37159311:+|3.454159174407832|0.0393138219556515|6.46|151.0|261|2|anti-sense L1PA6_dup2751|chr7:37153167-37159311:+|3.454159174407832|0.0393138219556515|6.46|151.0|261|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.2730712890625 2 562.272552 1122.53055 -0.15881 -8.9296E-05 -0.8632 -0.00048536 -1.022 -0.00057465 562.7727866005232 14.496 0.14554 14.496 14.441 14.586 0 27 17 2 0 0 0 0.48643 1 657 657 2.0598 0 1 62382 12501 14596 7887 7893 15469 15469 -0.025812407757030087 HPRHKSQLN 9 Unmodified _HPRHKSQLN_ 0 0 0 L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|164|2|anti-sense L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|164|2|anti-sense L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|164|2|anti-sense MSMS UPN47_class_I_Rep_2 3 558.802978515625 2 558.804688 1115.59482 NaN NaN NaN NaN NaN NaN NaN 25.203 1 28.686 28.186 29.186 3.483 0 0 0 0.39518 1 3465 3465 1.8442 0 1 12502 9378 7888 7894 15470 15470 0.04165003891762353 HPRINDHH 8 Unmodified _HPRINDHH_ 0 0 0 REV__nc|ENSG00000116809|Q13105-3|ZBTB17 REV__nc|ENSG00000116809|Q13105-3|ZBTB17 MSMS UPN47_class_I_Rep_2 3 513.2550048828125 2 513.254831 1024.49511 NaN NaN NaN NaN NaN NaN NaN 24.339 1 27.805 27.305 28.305 3.4655 0 0 0 0.40746 1 3210 3210 0.69038 0 1 + 12503 18615 7889 7895 15471 15471 -0.016158137222191726 HPRKGVHQ 8 Unmodified _HPRKGVHQ_ 0 0 0 L1MC5a_dup8936|chr9:85592990-85593804:+|1.6325918287616028|0.1300887733036051|3.65|151.0|41|1|anti-sense L1MC5a_dup8936|chr9:85592990-85593804:+|1.6325918287616028|0.1300887733036051|3.65|151.0|41|1|anti-sense L1MC5a_dup8936|chr9:85592990-85593804:+|1.6325918287616028|0.1300887733036051|3.65|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_2 3 479.76971435546875 2 479.770117 957.525681 NaN NaN NaN NaN NaN NaN NaN 12.405 1 15.794 15.294 16.294 3.3885 0 0 0 0.40625 1 76 76 2.3027 0.4585 1 12504 11771 7890 7896 15472 15472 0.04521964662853861 HPRLRRPM 8 Unmodified _HPRLRRPM_ 0 0 0 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MSMS UPN46_class_I_Rep_3 1 531.3203125 2 531.808719 1061.60289 NaN NaN NaN NaN NaN NaN NaN 100.56 1 100.56 100.06 101.06 0 0 0 0 0.40738 1 24514 24514 0.79363 0 1 12505 5719 7891 7897 15473 15473 0.07454859607514663 HPRPVRTL 8 Unmodified _HPRPVRTL_ 0 0 0 REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|12|1|sense REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 488.2950744628906 2 488.295968 974.577383 NaN NaN NaN NaN NaN NaN NaN 44.9 1 48.413 47.913 48.913 3.5132 0 0 0 0.40501 1 8600 8600 3.9444 0 1 + 12506 25678 7892 7898 15474 15474 0.08907708356753119 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 558.2803955078125 2 558.280318 1114.54608 NaN NaN NaN NaN NaN NaN NaN 76.892 1 80.306 79.806 80.806 3.4149 0 0 0 0.36148 1 19050 19050 19.439 0 1 12507 9935 7893 7899 15475 15475 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 558.27880859375 2 558.280318 1114.54608 NaN NaN NaN NaN NaN NaN NaN 76.923 1 80.338 79.838 80.838 3.4149 0 0 0 0.39819 1 19058 19058 8.5933 0 1 12508 9935 7893 7899 15476 15476 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 558.2796630859375 2 558.280318 1114.54608 NaN NaN NaN NaN NaN NaN NaN 77.066 1 80.481 79.981 80.981 3.4149 0 0 0 0.38547 1 19100 19100 13.508 0 1 12509 9935 7893 7899 15477 15477 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2792358398438 2 558.280318 1114.54608 NaN NaN NaN NaN NaN NaN NaN 77.01 1 80.341 79.841 80.841 3.3315 0 0 0 0.38547 1 19083 19083 13.508 0 1 12510 9935 7893 7899 15478 15478 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2789916992188 2 558.280318 1114.54608 0.46147 0.00025763 -1.3591 -0.00075877 -0.89764 -0.00050114 558.279352598209 77.198 0.25048 80.467 80.263 80.513 3.269 35 26 2 0 0 0 0.82752 1 19201 19201 8.5933 8.5933 1 80466 12511 9935 7893 7899 15479 15479 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2927856445312 2 558.280318 1114.54608 0.462 0.00025793 -1.2626 -0.0007049 -0.80063 -0.00044697 558.2794146729753 77.3 0.33505 80.569 80.513 80.848 3.269 45 35 2 0 0 0 0.82752 3 19313 19238;19285;19313 19.439 0 1 75999 12512 9935 7893 7899 15480;15481;15482 15482 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 557.7862548828125 2 558.280318 1114.54608 0.462 0.00025793 -1.2626 -0.0007049 -0.80063 -0.00044697 558.2794146729753 77.3 0.33505 80.569 80.513 80.848 3.269 45 35 2 0 0 0 0.72333 1 19317 19317 8.5933 0 1 75999 12513 9935 7893 7899 15483 15483 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 558.280318 1114.54608 0.47209 0.00026356 0.89534 0.00049985 1.3674 0.00076341 558.2804426569239 76.896 0.04953 80.228 80.19 80.239 3.3315 -0.11973 0.0024888 NaN 8.5933 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 36843 12514 9935 7893 7899 -0.006608646773429427 HPRQHFFF 8 Unmodified _HPRQHFFF_ 0 0 0 L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense L1MA5A_dup1413|chr6:138953132-138954402:+|1.112108091038304|0.0699556454342522|3.99|151.0|46|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 558.280318 1114.54608 0.46147 0.00025763 -1.3591 -0.00075877 -0.89764 -0.00050114 558.279352598209 77.198 0.25048 80.467 80.263 80.513 3.269 0.11973 -2.8406E-05 NaN 8.5933 35 26 2 NaN NaN NaN NaN 0 NaN NaN 0 80466 12515 9935 7893 7899 -0.006608646773429427 HPRRLSHV 8 Unmodified _HPRRLSHV_ 0 0 0 L1ME3_dup7731|chr16:81566617-81567048:+|1.0837211793928323|0.0069776332460453|7.28|151.0|19|1|anti-sense L1ME3_dup7731|chr16:81566617-81567048:+|1.0837211793928323|0.0069776332460453|7.28|151.0|19|1|anti-sense L1ME3_dup7731|chr16:81566617-81567048:+|1.0837211793928323|0.0069776332460453|7.28|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_1 5 501.2907409667969 2 501.291217 1000.56788 NaN NaN NaN NaN NaN NaN NaN 89.862 1 93.488 92.988 93.988 3.6255 0 0 0 0.3903 1 21594 21594 11.64 3.047 1 12516 12603 7894 7900 15484 15484 0.06761940071226036 HPRTKLRN 8 Unmodified _HPRTKLRN_ 0 0 0 L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|12|2|sense L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|12|2|sense L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 511.361083984375 2 511.304324 1020.5941 NaN NaN NaN NaN NaN NaN NaN 63.306 1 63.306 62.806 63.806 0 0 0 0 0.40643 1 14208 14208 2.0598 1.2661 1 12517 13022 7895 7901 15485 15485 0.08462209242691188 HPSILEMTQIL 11 Unmodified _HPSILEMTQIL_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 641.3467407226562 2 641.347206 1280.67986 NaN NaN NaN NaN NaN NaN NaN 51.807 1 51.807 51.307 52.307 0 0 0 0 0.38417 1 11036 11036 4.897 1.6157 1 + 12518 23746 7896 7902 15486 15486 0.050745685226956994 HPSILEMTQIL 11 Unmodified _HPSILEMTQIL_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 641.3477783203125 2 641.347206 1280.67986 NaN NaN NaN NaN NaN NaN NaN 69.741 1 69.741 69.241 70.241 0 0 0 0 0.38417 1 15995 15995 2.4985 0 1 + 12519 23746 7896 7902 15487 15487 0.050745685226956994 HPSILEMTQIL 11 Unmodified _HPSILEMTQIL_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 641.346435546875 2 641.347206 1280.67986 NaN NaN NaN NaN NaN NaN NaN 78.384 1 78.384 77.884 78.884 0 0 0 0 0.38417 1 18356 18356 2.4985 0.65425 1 + 12520 23746 7896 7902 15488 15488 0.050745685226956994 HPSILEMTQIL 11 Unmodified _HPSILEMTQIL_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 641.3455810546875 2 641.347206 1280.67986 NaN NaN NaN NaN NaN NaN NaN 48.88 1 52.539 52.039 53.039 3.6592 0 0 0 0.38417 1 10585 10585 4.897 1.6157 1 + 12521 23746 7896 7902 15489 15489 0.050745685226956994 HPSILEMTQIL 11 Unmodified _HPSILEMTQIL_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 641.346923828125 2 641.347206 1280.67986 NaN NaN NaN NaN NaN NaN NaN 67.578 1 71.074 70.574 71.574 3.4964 0 0 0 0.38417 1 15528 15528 2.4985 0.65425 1 + 12522 23746 7896 7902 15490 15490 0.050745685226956994 HPSIWLFVG 9 Unmodified _HPSIWLFVG_ 0 0 0 HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense;HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|140|1|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2875366210938 2 528.287277 1054.56 NaN NaN NaN NaN NaN NaN NaN 32.375 1 36.024 35.524 36.524 3.6497 0 0 0 0.34056 1 4994 4994 8.5933 1.304 1 12523 8278 7897 7903 15491 15491 0.034903680310890195 HPSIWLFVG 9 Unmodified _HPSIWLFVG_ 0 0 0 HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense;HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|140|1|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2850341796875 2 528.287277 1054.56 NaN NaN NaN NaN NaN NaN NaN 32.421 1 36.071 35.571 36.571 3.6497 0 0 0 0.26661 1 5007 5007 12.532 2.4576 1 12524 8278 7897 7903 15492 15492 0.034903680310890195 HPSIWLFVG 9 Unmodified _HPSIWLFVG_ 0 0 0 HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense;HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|140|1|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense MSMS UPN48_class_I_Rep_3 7 528.28564453125 2 528.287277 1054.56 NaN NaN NaN NaN NaN NaN NaN 32.346 1 36.035 35.535 36.535 3.6896 0 0 0 0.26661 1 4904 4904 12.532 2.4576 1 12525 8278 7897 7903 15493 15493 0.034903680310890195 HPSIWLFVG 9 Unmodified _HPSIWLFVG_ 0 0 0 HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense;HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|140|1|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|156|2|anti-sense MSMS UPN48_class_I_Rep_3 7 528.6126708984375 2 528.287277 1054.56 NaN NaN NaN NaN NaN NaN NaN 32.424 1 36.114 35.614 36.614 3.6896 0 0 0 0.34056 1 4928 4928 8.5933 1.304 1 12526 8278 7897 7903 15494 15494 0.034903680310890195 HPSQFALQK 9 Unmodified _HPSQFALQK_ 0 0 0 L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|31|2|sense L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|31|2|sense L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 528.2855224609375 2 528.285266 1054.55598 NaN NaN NaN NaN NaN NaN NaN 32.473 1 36 35.5 36.5 3.5266 0 0 0 0.36505 1 4943 4943 7.2892 0 1 12527 8988 7898 7904 15495 15495 0.030882785373478328 HPSQGFELEF 10 Unmodified _HPSQGFELEF_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|5|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|5|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 595.7774047851562 2 595.77747 1189.54039 0.4739 0.00028234 -0.012657 -7.5406E-06 0.46124 0.0002748 595.7774676749433 58.487 0.83292 62.01 61.699 62.532 3.5231 84 56 2 0 0 0 0.53004 1 12638 12638 8.1555 0.24537 1 231760 12528 9617 7899 7905 15496 15496 -0.04680052770322618 HPSSIFFSQI 10 Unmodified _HPSSIFFSQI_ 0 0 0 L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.7984008789062 2 581.798206 1161.58186 0.49887 0.00029024 -0.36242 -0.00021086 0.13645 7.9384E-05 581.7975673361994 66.765 0.3379 70.251 70.077 70.415 3.4866 27 21 2 0 0 0 0.34027 1 15265 15265 24.991 4.5764 1 161650 12529 11585 7900 7906 15497 15497 0.007531279890145015 HPSSIFFSQI 10 Unmodified _HPSSIFFSQI_ 0 0 0 L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.7991943359375 2 581.798206 1161.58186 0.53696 0.0003124 -0.34833 -0.00020266 0.18863 0.00010974 581.7981978426435 66.657 0.26926 70.165 70.058 70.328 3.5077 19 15 2 0 0 0 0.4965 1 15157 15157 12.241 2.0901 1 97924 12530 11585 7900 7906 15498 15498 0.007531279890145015 HPSSIFFSQI 10 Unmodified _HPSSIFFSQI_ 0 0 0 L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense L1MC4a_dup46|chr1:8547315-8548702:+|1.5068574790829072|0.0217979480148597|6.11|151.0|69|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 581.798206 1161.58186 0.49887 0.00029024 -0.36242 -0.00021086 0.13645 7.9384E-05 581.7975673361994 66.765 0.3379 70.251 70.077 70.415 3.4866 0.043229 -1.0363E-05 NaN 24.991 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 161650 12531 11585 7900 7906 0.007531279890145015 HPTAVEYTL 9 Unmodified _HPTAVEYTL_ 0 0 0 L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|78|3|sense L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|78|3|sense L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|78|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.7637939453125 2 515.763832 1029.51311 0.24718 0.00012749 -0.1556 -8.0254E-05 0.091579 4.7233E-05 515.7636574668796 35.115 1.0891 38.787 38.448 39.537 3.6721 266 115 3 0 0 0 0.42249 1 5793 5793 6.7232 0.51738 1 756040 12532 8608 7901 7907 15499 15499 -0.00046536310719602625 HPTDYLLIAK 10 Unmodified _HPTDYLLIAK_ 0 0 0 L1MC5a_dup5032|chr5:36966057-36966708:-|1.179077119307604|0.0333336622211882|5.14|151.0|24|3|sense L1MC5a_dup5032|chr5:36966057-36966708:-|1.179077119307604|0.0333336622211882|5.14|151.0|24|3|sense L1MC5a_dup5032|chr5:36966057-36966708:-|1.179077119307604|0.0333336622211882|5.14|151.0|24|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 585.3306274414062 2 585.829506 1169.64446 0.45127 0.00026437 -2.2424 -0.0013137 -1.7912 -0.0010493 585.8270687828946 71.726 0.073517 75.192 75.158 75.232 3.466 8 6 2 0 0 0 0.84575 1 16794 16794 1.4819 0.28856 1 69015 12533 11751 7902 7908 15500 15500 0.06642274057185205 HPTEWEIIF 9 Unmodified _HPTEWEIIF_ 0 0 0 L1PB3_dup2621|chr12:1299974-1300978:+|3.3203503312010545|0.0480957485438127|6.11|151.0|5|1|sense L1PB3_dup2621|chr12:1299974-1300978:+|3.3203503312010545|0.0480957485438127|6.11|151.0|5|1|sense L1PB3_dup2621|chr12:1299974-1300978:+|3.3203503312010545|0.0480957485438127|6.11|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.2901000976562 2 586.292756 1170.57096 0.51709 0.00030316 -0.010788 -6.325E-06 0.5063 0.00029684 586.2925636292705 62.839 0.89818 66.348 65.972 66.87 3.5091 141 64 3 0 0 0 0.41259 2 13903 13903;13919 7.2892 1.0834 1 356540 12534 15275 7903 7909 15501;15502 15501 -0.007502743852910498 HPTNYSIPVY 10 Unmodified _HPTNYSIPVY_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|182|2|anti-sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|182|2|anti-sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|182|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 595.794189453125 2 595.795663 1189.57677 0.44811 0.00026698 0.37715 0.0002247 0.82525 0.00049168 595.7955068177259 54.75 1.156 57.936 57.538 58.694 3.1856 124 66 3 0 0 0 0.55448 1 12576 12576 4.897 0 1 243880 12535 11310 7904 7910 15503 15503 -0.010431758736103802 HPTPARGYQ 9 Unmodified _HPTPARGYQ_ 0 0 0 REV__MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|34|3|sense REV__MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|34|3|sense MSMS UPN48_class_I_Rep_1 5 513.7759399414062 2 513.759415 1025.50428 NaN NaN NaN NaN NaN NaN NaN 30.117 1 33.659 33.159 34.159 3.542 0 0 0 0.39518 1 4280 4280 1.8442 1.0506 1 + 12536 31531 7905 7911 15504 15504 -0.007454651565240056 HPTRSFIH 8 Unmodified _HPTRSFIH_ 0 0 0 REV__MER63B_dup939|chr6:166981092-166981506:-|1.2896774836809104|0.370111000936716|1.8|151.0|9|2|sense REV__MER63B_dup939|chr6:166981092-166981506:-|1.2896774836809104|0.370111000936716|1.8|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 497.76617431640625 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 24.949 1 28.516 28.016 29.016 3.5667 0 0 0 0.40738 1 2831 2831 0.79363 0 1 + 12537 31518 7906 7912 15505 15505 0.017431425687163937 HPTVALSYLI 10 Unmodified _HPTVALSYLI_ 0 0 0 REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.3187255859375 2 557.318774 1112.623 0.37828 0.00021082 -0.056873 -3.1696E-05 0.3214 0.00017912 557.3185526269152 64.993 0.31272 68.348 68.101 68.413 3.3557 38 23 2 0 0 0 0.41718 1 15443 15443 18.146 4.2403 1 131930 + 12538 26231 7907 7913 15506 15506 0.07118889028470221 HPTVALSYLI 10 Unmodified _HPTVALSYLI_ 0 0 0 REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.3186645507812 2 557.318774 1112.623 0.37508 0.00020904 -0.034961 -1.9484E-05 0.34012 0.00018956 557.3186267574554 65.115 0.59547 68.471 68.405 69.001 3.3557 59 34 2 0 0 0 0.43106 2 15523 15494;15523 17.113 4.8722 1 123320 + 12539 26231 7907 7913 15507;15508 15508 0.07118889028470221 HPTVALSYLI 10 Unmodified _HPTVALSYLI_ 0 0 0 REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.3180541992188 2 557.318774 1112.623 0.37543 0.00020924 0.26854 0.00014966 0.64397 0.0003589 557.3187687319382 65.312 0.38197 68.568 68.358 68.74 3.2556 48 28 2 0 0 0 0.41718 3 15655 15611;15655;15657 18.146 4.2403 1 125230 + 12540 26231 7907 7913 15509;15510;15511 15510 0.07118889028470221 HPTVALSYLI 10 Unmodified _HPTVALSYLI_ 0 0 0 REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.3193359375 2 557.318774 1112.623 0.43291 0.00024127 -0.099131 -5.5248E-05 0.33378 0.00018602 557.3186242004685 65.448 0.28648 68.627 68.436 68.722 3.1795 38 22 2 0 0 0 0.31342 1 15703 15703 29.082 2.8134 1 84269 + 12541 26231 7907 7913 15512 15512 0.07118889028470221 HPTVALSYLI 10 Unmodified _HPTVALSYLI_ 0 0 0 REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|33|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 557.318774 1112.623 0.37324 0.00020802 -1.4841 -0.00082713 -1.1109 -0.00061911 557.3204009463185 68.049 0.051315 68.049 68.01 68.061 0 -0.14971 -0.00158 NaN 18.146 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 61981 + 12542 26231 7907 7913 0.07118889028470221 HPVKRCLLP 9 Unmodified _HPVKRCLLP_ 0 0 0 THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 531.8171997070312 2 531.815679 1061.6168 NaN NaN NaN NaN NaN NaN NaN 80.409 1 83.718 83.218 84.218 3.309 0 0 0 0.39326 1 20119 20119 2.3027 0 1 12543 32949 7908 7914 15513 15513 0.08846092315957321 HPVLMQKIK 9 Unmodified _HPVLMQKIK_ 0 0 0 REV__PPP1R10|p.G646Tfs*31|1|0.22|ENSG00000204569|chr6:30602866-30602867|CC/-|frameshift_variant REV__PPP1R10|p.G646Tfs*31|1|0.22|ENSG00000204569|chr6:30602866-30602867|CC/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 547.3321533203125 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 95.866 1 99.479 98.979 99.979 3.6124 0 0 0 0.40038 1 23092 23092 0.6015 0.076735 1 + 12544 21199 7909 7915 15514 15514 0.1051524563017665 HPVRDPVH 8 Unmodified _HPVRDPVH_ 0 0 0 nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF nc|ENSG00000123989|Q8IZ52-4|CHPF nc|ENSG00000123989|Q8IZ52-4|CHPF MULTI-MSMS UPN47_class_I_Rep_2 3 478.7563171386719 2 478.756675 955.498798 -0.2351 -0.00011256 -0.49763 -0.00023824 -0.73273 -0.0003508 478.7562482707483 12.151 0.24489 15.54 15.412 15.657 3.3885 50 31 3 0 0 0 0.82752 1 29 29 15.847 0 1 51068 12545 2439 7910 7916 15515 15515 0.019268560516593425 HPVSGPLSVI 10 Unmodified _HPVSGPLSVI_ 0 0 0 MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|36|2|sense MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|36|2|sense MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|36|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 503.7638854980469 2 503.290017 1004.56548 0.06494 3.2684E-05 0.10983 5.5274E-05 0.17477 8.7958E-05 503.2899152248774 50.512 0.458 54.14 53.874 54.332 3.6285 25 19 2 0 0 0 0.84575 1 11100 11100 6.2058 0.47393 1 60252 12546 16186 7911 7917 15516 15516 0.06338046822895649 HPVYMCII 8 Unmodified _HPVYMCII_ 0 0 0 REV__L1MB3_dup4011|chr4:26376104-26377045:-|1.237815281609475|0.0174201535107932|6.15|151.0|63|3|anti-sense REV__L1MB3_dup4011|chr4:26376104-26377045:-|1.237815281609475|0.0174201535107932|6.15|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.2430114746094 2 488.243166 974.47178 NaN NaN NaN NaN NaN NaN NaN 27.244 1 30.875 30.375 31.375 3.6311 0 0 0 0.40581 1 3582 3582 2.8892 0 1 + 12547 25886 7912 7918 15517 15517 -0.016477118753982722 HPWCVFSFF 9 Unmodified _HPWCVFSFF_ 0 0 0 REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|198|1|anti-sense REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|198|1|anti-sense MSMS UPN47_class_I_Rep_2 3 585.2651977539062 2 585.265487 1168.51642 NaN NaN NaN NaN NaN NaN NaN 51.411 1 54.75 54.25 55.25 3.3386 0 0 0 0.39518 1 11386 11386 1.8442 0 1 + 12548 30199 7913 7919 15518 15518 -0.06109564737698747 HPWLYSLDT 9 Unmodified _HPWLYSLDT_ 0 0 0 MER20_dup2868|chr3:50013876-50014062:+|1.6517306029125314|0.0163955756698953|6.65|151.0|7|1|anti-sense MER20_dup2868|chr3:50013876-50014062:+|1.6517306029125314|0.0163955756698953|6.65|151.0|7|1|anti-sense MER20_dup2868|chr3:50013876-50014062:+|1.6517306029125314|0.0163955756698953|6.65|151.0|7|1|anti-sense MSMS UPN47_class_I_Rep_3 4 566.2749633789062 2 566.277106 1130.53966 NaN NaN NaN NaN NaN NaN NaN 59.002 1 62.168 61.668 62.668 3.1658 0 0 0 0.39428 1 13753 13753 2.0598 0 1 12549 15839 7914 7920 15519 15519 -0.0203884741940783 HPWYKKWY 8 Unmodified _HPWYKKWY_ 0 0 0 REV__L1M4c_dup3003|chr16:20688106-20689559:+|2.594034334166804|0.2384112616471539|3.44|149.0|45|3|sense REV__L1M4c_dup3003|chr16:20688106-20689559:+|2.594034334166804|0.2384112616471539|3.44|149.0|45|3|sense MSMS UPN48_class_I_Rep_1 5 604.3037109375 2 604.306001 1206.59745 NaN NaN NaN NaN NaN NaN NaN 74.9 1 78.39 77.89 78.89 3.49 0 0 0 0.40738 1 17721 17721 0.79363 0.19213 1 + 12550 24594 7915 7921 15520 15520 0.002414592966943019 HPYIDESVP 9 Unmodified _HPYIDESVP_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|235|3|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|235|3|anti-sense MSMS UPN48_class_I_Rep_1 5 528.7705688476562 2 528.753464 1055.49238 NaN NaN NaN NaN NaN NaN NaN 32.643 1 36.169 35.669 36.669 3.5266 0 0 0 0.38299 1 4988 4988 4.756 0.42677 1 + 12551 31403 7916 7922 15521 15521 -0.03315126690381476 HQAFYYFMVLH 11 Unmodified _HQAFYYFMVLH_ 0 0 0 REV__ENSG00000152926|ENST00000282869|ZNF117 REV__ENSG00000152926|ENST00000282869|ZNF117 MSMS UPN46_class_I_Rep_3 1 485.900146484375 3 485.900786 1454.68053 NaN NaN NaN NaN NaN NaN NaN 28.282 1 28.282 27.782 28.782 0 0 0 0 0.38417 1 4320 4320 2.8433 1.6285 1 + 12552 19696 7917 7923 15522 15522 -0.028625920376271097 HQALSSSNSFA 11 Unmodified _HQALSSSNSFA_ 0 0 0 REV__ENSG00000198440|ENST00000333201|ZNF583 REV__ENSG00000198440|ENST00000333201|ZNF583 MSMS UPN48_class_I_Rep_2 6 574.7691650390625 2 574.770177 1147.5258 NaN NaN NaN NaN NaN NaN NaN 39.97 1 43.712 43.212 44.212 3.7413 0 0 0 0.38417 1 7151 7151 2.4985 0.19575 1 + 12553 21128 7918 7924 15523 15523 -0.04206124918482601 HQANLRHLC 9 Unmodified _HQANLRHLC_ 0 0 0 nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1 nc|ENSG00000166349|P15918-2|RAG1 nc|ENSG00000166349|P15918-2|RAG1 MSMS UPN48_class_I_Rep_2 6 546.2787475585938 2 546.279992 1090.54543 NaN NaN NaN NaN NaN NaN NaN 38.457 1 42.173 41.673 42.673 3.7164 0 0 0 0.39518 1 6705 6705 1.8442 0 1 12554 4235 7919 7925 15524 15524 0.0037797261129526305 HQARSHLNSF 10 Unmodified _HQARSHLNSF_ 0 0 0 REV__ENSG00000064703|ENST00000369702|DDX20 REV__ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS UPN47_class_I_Rep_1 2 598.80078125 2 598.799603 1195.58465 0.37556 0.00022489 1.5846 0.00094883 1.9601 0.0011737 599.3017993523426 65.16 0.064018 68.516 68.488 68.552 3.3557 6 4 2 0 0 0 0.56354 1 15527 15527 1.3295 0.63916 1 53270 + 12555 17745 7920 7926 15525 15525 -0.005316038335195117 HQDKQTQN 8 Unmodified _HQDKQTQN_ 0 0 0 REV__L1MA9_dup88|chr1:50820330-50820963:-|1.1820345468553477|0.0044224754776151|8.06|150.0|17|3|sense REV__L1MA9_dup88|chr1:50820330-50820963:-|1.1820345468553477|0.0044224754776151|8.06|150.0|17|3|sense MSMS UPN48_class_I_Rep_2 6 499.7354736328125 2 499.736137 997.457721 NaN NaN NaN NaN NaN NaN NaN 117.13 1 120.79 120.29 121.29 3.6607 0 0 0 0.40625 1 28064 28064 2.3027 0 1 + 12556 25648 7921 7927 15526 15526 -0.04110949778487338 HQFEHQVGF 9 Unmodified _HQFEHQVGF_ 0 0 0 REV__nc|ENSG00000181282|Q8NH89|OR5AK3P REV__nc|ENSG00000181282|Q8NH89|OR5AK3P MULTI-MSMS UPN47_class_I_Rep_1 2 564.7638549804688 2 564.764697 1127.51484 0.39887 0.00022527 -1.1273 -0.00063666 -0.72842 -0.00041139 564.7639516867094 77.396 0.57081 80.825 80.514 81.085 3.4289 93 50 2 0 0 0 0.28552 2 19139 19139;19186 14.838 3.198 1 113750 + 12557 32075 7922 7928 15527;15528 15527 -0.043814825020945136 HQFFFILW 8 Unmodified _HQFFFILW_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|85|2|anti-sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|85|2|anti-sense MSMS UPN47_class_I_Rep_3 4 569.2978515625 2 569.297645 1136.58074 NaN NaN NaN NaN NaN NaN NaN 43.818 1 47.06 46.56 47.56 3.2419 0 0 0 0.40738 1 9129 9129 0.79363 0 1 + 12558 27344 7923 7929 15529 15529 0.017909584107655974 HQFLQNEY 8 Unmodified _HQFLQNEY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN46_class_I_Rep_3 1 539.7507934570312 2 539.751256 1077.48796 0.34076 0.00018392 0.28012 0.00015119 0.62088 0.00033512 539.7512192667002 43.313 0.47247 43.313 43.131 43.604 0 54 42 2 0 0 0 0.82752 2 8676 8614;8676 19.257 14.838 1 172140 12559 4341 7924 7930 15530;15531 15531 -0.04768591113270304 HQFPYLVP 8 Unmodified _HQFPYLVP_ 0 0 0 REV__L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|43|2|anti-sense REV__L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_2 3 500.7230529785156 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 25.779 1 29.273 28.773 29.773 3.4945 0 0 0 0.40581 1 3632 3632 2.8892 0 1 + 12560 27641 7925 7931 15532 15532 0.018023926226987896 HQFRNQAIY 9 Unmodified _HQFRNQAIY_ 0 0 0 REV__L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|71|3|sense REV__L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|71|3|sense MSMS UPN48_class_I_Rep_2 6 588.8014526367188 2 588.799072 1175.58359 NaN NaN NaN NaN NaN NaN NaN 56.105 1 59.638 59.138 60.138 3.5333 0 0 0 0.35339 1 12018 12018 7.9102 0.62092 1 + 12561 24835 7926 7932 15533 15533 0.0028218179761552165 HQGTVTSLLM 10 Unmodified _HQGTVTSLLM_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|204|1|anti-sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|204|1|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7824096679688 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 47.658 1 51.353 50.853 51.853 3.6951 0 0 0 0.53105 1 10213 10213 3.2813 0.97858 1 + 12562 24143 7927 7933 15534 15534 0.014574817372704274 HQGTVTSLLM 10 Unmodified _HQGTVTSLLM_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|204|1|anti-sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|204|1|anti-sense MSMS UPN47_class_I_Rep_3 4 543.7811889648438 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 48.797 1 52.032 51.532 52.532 3.2345 0 0 0 0.53105 1 10641 10641 6.2058 0.47393 1 + 12563 24143 7927 7933 15535 15535 0.014574817372704274 HQHGISTTKT 10 Unmodified _HQHGISTTKT_ 0 0 0 REV__L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|33|2|sense REV__L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|33|2|sense MSMS UPN48_class_I_Rep_3 7 555.2866821289062 2 555.288537 1108.56252 NaN NaN NaN NaN NaN NaN NaN 68.619 1 72.128 71.628 72.628 3.5094 0 0 0 0.53105 1 15746 15746 1.1933 0 1 + 12564 29914 7928 7934 15536 15536 0.01258171698100341 HQHKSWFQ 8 Unmodified _HQHKSWFQ_ 0 0 0 L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|13|2|sense L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|13|2|sense L1MEd_dup19431|chr17:72864978-72865817:+|1.0744816958174983|0.0063241154582353|7.41|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 549.2857666015625 2 549.267407 1096.52026 NaN NaN NaN NaN NaN NaN NaN 39.575 1 43.08 42.58 43.58 3.5048 0 0 0 0.4044 1 7005 7005 4.756 0 1 12565 13192 7929 7935 15537 15537 -0.024137589196243425 HQIPNTLF 8 Unmodified _HQIPNTLF_ 0 0 0 REV__L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|116|2|sense REV__L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|116|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 485.2616882324219 2 485.261259 968.507966 0.28303 0.00013735 -0.2544 -0.00012345 0.028635 1.3895E-05 485.26106682926365 51.415 0.76382 54.753 54.277 55.041 3.3386 70 38 2 0 0 0 0.82752 1 11295 11295 11.64 3.047 1 143160 + 12566 30025 7930 7936 15538 15538 0.0224520461732709 HQIPVDLHIQ 10 Unmodified _HQIPVDLHIQ_ 0 0 0 REV__Charlie25_dup629|chr9:94853472-94855071:+|1.4961770054343675|0.0188922881631239|6.31|151.0|96|3|anti-sense REV__Charlie25_dup629|chr9:94853472-94855071:+|1.4961770054343675|0.0188922881631239|6.31|151.0|96|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 600.3302612304688 2 600.330205 1198.64586 0.42545 0.00025541 -0.079646 -4.7814E-05 0.34581 0.0002076 600.3301286703099 43.577 0.89588 47.087 46.771 47.667 3.5103 119 77 2 0 0 0 0.28952 1 8153 8153 34.932 2.8946 1 284420 + 12567 17366 7931 7937 15539 15539 0.054479081459248846 HQIPVDLHIQ 10 Unmodified _HQIPVDLHIQ_ 0 0 0 REV__Charlie25_dup629|chr9:94853472-94855071:+|1.4961770054343675|0.0188922881631239|6.31|151.0|96|3|anti-sense REV__Charlie25_dup629|chr9:94853472-94855071:+|1.4961770054343675|0.0188922881631239|6.31|151.0|96|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 600.3306274414062 2 600.330205 1198.64586 0.45371 0.00027238 0.26087 0.00015661 0.71458 0.00042899 600.330116429307 43.344 0.85986 46.982 46.632 47.492 3.6385 136 64 3 0 0 0 0.40112 1 8092 8092 19.362 0.98885 1 297620 + 12568 17366 7931 7937 15540 15540 0.054479081459248846 HQIRTTLSP 9 Unmodified _HQIRTTLSP_ 0 0 0 HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|15|1|sense HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|15|1|sense HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 526.7966918945312 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 27.027 1 30.589 30.089 31.089 3.5629 0 0 0 0.39518 1 3415 3415 1.8442 0.19162 1 12569 8235 7932 7938 15541 15541 0.05371663566097595 HQIWKIWGH 9 Unmodified _HQIWKIWGH_ 0 0 0 L1ME1_dup3422|chr2:68221587-68222334:+|1.661558345793942|0.0158851488002258|6.71|151.0|43|2|anti-sense L1ME1_dup3422|chr2:68221587-68222334:+|1.661558345793942|0.0158851488002258|6.71|151.0|43|2|anti-sense L1ME1_dup3422|chr2:68221587-68222334:+|1.661558345793942|0.0158851488002258|6.71|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_2 3 602.8216552734375 2 602.82235 1203.63015 NaN NaN NaN NaN NaN NaN NaN 45.235 1 48.588 48.088 49.088 3.3534 0 0 0 0.40038 1 9512 9512 0.6015 0 1 12570 12396 7933 7939 15542 15542 0.0364766641953338 HQKLGIAY 8 Unmodified _HQKLGIAY_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS UPN46_class_I_Rep_3 1 465.26373291015625 2 465.263802 928.513051 0.11247 5.2327E-05 0.044674 2.0785E-05 0.15714 7.3112E-05 465.26370669911194 36.637 0.85741 36.637 36.2 37.058 0 141 77 2 0 0 0 0.82752 2 6776 6776;6817 38.151 13.477 1 235110 12571 2936 7934 7940 15543;15544 15543 0.04593508479945285 HQKPKMHIK 9 Unmodified _HQKPKMHIK_ 0 0 0 REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|83|2|sense REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|83|2|sense MSMS UPN48_class_I_Rep_3 7 573.8312377929688 2 573.83186 1145.64917 NaN NaN NaN NaN NaN NaN NaN 90.253 1 94.1 93.6 94.6 3.847 0 0 0 0.39518 1 21427 21427 1.8442 0.19162 1 + 12572 29297 7935 7941 15545 15545 0.08216879718952441 HQKPTIKE 8 Unmodified _HQKPTIKE_ 0 0 0 L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|55|2|sense L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|55|2|sense L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|55|2|sense MSMS UPN48_class_I_Rep_1 5 490.8670654296875 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 33.487 1 37.007 36.507 37.507 3.5201 0 0 0 0.40404 1 5230 5230 5.2307 0 1 12573 13790 7936 7942 15546 15546 0.054488761630864246 HQKTTTPDP 9 Unmodified _HQKTTTPDP_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MSMS UPN46_class_I_Rep_3 1 512.6786499023438 2 512.756538 1023.49852 NaN NaN NaN NaN NaN NaN NaN 29.963 1 29.963 29.463 30.463 0 0 0 0 0.39598 1 4814 4814 1.6526 0.85899 1 12574 3761 7937 7943 15547 15547 -0.012286084588822632 HQLLSGSSFF 10 Unmodified _HQLLSGSSFF_ 0 0 0 LTR33_dup315|chr1:88799421-88799899:+|1.7361060754037023|0.0557984399625666|4.96|151.0|9|2|sense LTR33_dup315|chr1:88799421-88799899:+|1.7361060754037023|0.0557984399625666|4.96|151.0|9|2|sense LTR33_dup315|chr1:88799421-88799899:+|1.7361060754037023|0.0557984399625666|4.96|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 561.7809448242188 2 561.782556 1121.55056 NaN NaN NaN NaN NaN NaN NaN 84.19 1 87.787 87.287 88.287 3.5973 0 0 0 0.53105 1 20154 20154 6.2058 1.4498 1 12575 15620 7938 7944 15548 15548 -0.005354450451022785 HQLTRKGSK 9 Unmodified _HQLTRKGSK_ 0 0 0 L1PB1_dup6406|chr8:47461610-47462300:-|1.6627683535762536|0.0114585912441642|7.18|151.0|20|3|sense L1PB1_dup6406|chr8:47461610-47462300:-|1.6627683535762536|0.0114585912441642|7.18|151.0|20|3|sense L1PB1_dup6406|chr8:47461610-47462300:-|1.6627683535762536|0.0114585912441642|7.18|151.0|20|3|sense MSMS UPN48_class_I_Rep_1 5 527.808349609375 2 527.809439 1053.60433 NaN NaN NaN NaN NaN NaN NaN 96.382 1 99.994 99.494 100.49 3.6124 0 0 0 0.3967 1 23218 23218 1.4819 0.28856 1 12576 15171 7939 7945 15549 15549 0.07966772177269377 HQPHPQMPQ 9 Unmodified _HQPHPQMPQ_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS UPN46_class_I_Rep_3 1 550.2587280273438 2 550.258725 1098.5029 NaN NaN NaN NaN NaN NaN NaN 69.885 1 69.885 69.385 70.385 0 0 0 0 0.39518 1 16035 16035 1.8442 1.0506 1 + 12577 18638 7940 7946 15550 15550 -0.042414225169295605 HQPVSSIEAHV 11 Unmodified _HQPVSSIEAHV_ 0 0 0 REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|94|1|anti-sense REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|94|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 602.2506103515625 2 602.309469 1202.60439 0.47824 0.00028805 0.68674 0.00041363 1.165 0.00070168 602.3098870931444 70.582 0.081665 74.118 74.068 74.149 3.5359 9 8 2 0 0 0 22.551 1 16419 16419 1.1933 0 1 78712 + 12578 24046 7941 7947 15551 15551 0.011187273866198666 HQQPHYQWD 9 Unmodified _HQQPHYQWD_ 0 0 0 REV__ENSG00000284484|ENST00000640173|CPHXL2 REV__ENSG00000284484|ENST00000640173|CPHXL2 MSMS UPN47_class_I_Rep_1 2 619.7684326171875 2 619.770511 1237.52647 NaN NaN NaN NaN NaN NaN NaN 41.917 1 45.596 45.096 46.096 3.6792 0 0 0 0.39518 1 8467 8467 1.8442 0.36234 1 + 12579 21455 7942 7948 15552 15552 -0.08279285478761267 HQQPPSQQY 9 Unmodified _HQQPPSQQY_ 0 0 0 nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18 nc|ENSG00000141380|Q15532-2|SS18 nc|ENSG00000141380|Q15532-2|SS18 MULTI-MSMS UPN46_class_I_Rep_3 1 556.7596435546875 2 556.759612 1111.50467 -0.0030199 -1.6814E-06 -0.041155 -2.2913E-05 -0.044175 -2.4595E-05 556.7595814088291 22.486 0.42659 22.486 22.218 22.645 0 67 41 2 0 0 0 0.15547 4 2679 2638;2679;2714;2716 24.991 14.917 1 87550 12580 3216 7943 7949 15553;15554;15555;15556 15554 -0.04662090227338922 HQQPPSQQY 9 Unmodified _HQQPPSQQY_ 0 0 0 nc|ENSG00000141380|Q15532-2|SS18;ENSG00000141380|ENST00000415083|SS18 nc|ENSG00000141380|Q15532-2|SS18 nc|ENSG00000141380|Q15532-2|SS18 MSMS UPN46_class_I_Rep_3 1 556.75927734375 2 556.759612 1111.50467 NaN NaN NaN NaN NaN NaN NaN 22.754 1 22.754 22.254 23.254 0 0 0 0 0.16861 1 2752 2752 18.373 2.5259 1 12581 3216 7943 7949 15557 15557 -0.04662090227338922 HQREHLNGQ 9 Unmodified _HQREHLNGQ_ 0 0 0 L1ME3B_dup118|chr1:44444741-44445231:-|8.68150615297941|0.0021392947509612|11.99|151.0|8|2|sense L1ME3B_dup118|chr1:44444741-44445231:-|8.68150615297941|0.0021392947509612|11.99|151.0|8|2|sense L1ME3B_dup118|chr1:44444741-44445231:-|8.68150615297941|0.0021392947509612|11.99|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 559.7769775390625 2 559.776128 1117.5377 NaN NaN NaN NaN NaN NaN NaN 22.107 1 25.782 25.282 26.282 3.6749 0 0 0 0.38784 1 2512 2512 3.5965 1.5367 1 12582 12695 7944 7950 15558 15558 -0.01636463384625131 HQRGPYFA 8 Unmodified _HQRGPYFA_ 0 0 0 REV__nc|ENSG00000163746|Q9NRY7-3|PLSCR2 REV__nc|ENSG00000163746|Q9NRY7-3|PLSCR2 MSMS UPN47_class_I_Rep_3 4 488.2427673339844 2 488.243401 974.472249 NaN NaN NaN NaN NaN NaN NaN 20.128 1 23.48 22.98 23.98 3.3514 0 0 0 0.40604 1 2018 2018 2.5775 0 1 + 12583 32037 7945 7951 15559 15559 -0.016008328396878824 HQRWIQTRKKY 11 Unmodified _HQRWIQTRKKY_ 0 0 0 L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|112|3|sense L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|112|3|sense L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|112|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.6261596679688 3 515.291664 1542.85316 -0.45382 -0.00023385 -0.22048 -0.00011361 -0.6743 -0.00034746 515.2914537261532 23.077 0.78378 26.427 26.027 26.811 3.3503 122 63 3 0 0 0 0.68478 1 2852 2852 0.094841 0.094841 1 93027 12584 15173 7946 7952 15560 15560 0.10345115413952044 HQSSSPDGER 10 Unmodified _HQSSSPDGER_ 0 0 0 REV__nc|ENSG00000049540|P15502-4|ELN REV__nc|ENSG00000049540|P15502-4|ELN MSMS UPN46_class_I_Rep_3 1 550.2437133789062 2 550.241783 1098.46901 NaN NaN NaN NaN NaN NaN NaN 100.67 1 100.67 100.17 101.17 0 0 0 0 0.53105 1 24545 24545 2.9952 0.26005 1 + 12585 31934 7947 7953 15561 15561 -0.0762817247498333 HQTEVKMRKL 10 Unmodified _HQTEVKMRKL_ 0 0 0 REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|85|3|sense REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|85|3|sense MSMS UPN46_class_I_Rep_3 1 635.3855590820312 2 635.358439 1268.70233 NaN NaN NaN NaN NaN NaN NaN 36.386 1 36.386 35.886 36.886 0 0 0 0 0.53105 1 6740 6740 1.3295 0.25807 1 + 12586 29635 7948 7954 15562 15562 0.07872212710958593 HQTFIISEFL 10 Unmodified _HQTFIISEFL_ 0 0 0 MLT1F1_dup2721|chr16:85711894-85712387:+|2.2638415251226705|0.1241229987535388|4.19|151.0|28|3|anti-sense MLT1F1_dup2721|chr16:85711894-85712387:+|2.2638415251226705|0.1241229987535388|4.19|151.0|28|3|anti-sense MLT1F1_dup2721|chr16:85711894-85712387:+|2.2638415251226705|0.1241229987535388|4.19|151.0|28|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 617.8275146484375 2 617.826963 1233.63937 0.64013 0.00039549 0.0099086 6.1218E-06 0.65004 0.00040161 617.826807282731 69.132 0.21954 72.642 72.471 72.69 3.5094 21 15 2 0 0 0 0.56155 1 15871 15871 2.7352 0.23671 1 89847 12587 16388 7949 7955 15563 15563 0.03189970194580383 HQTGVLIFDG 10 Unmodified _HQTGVLIFDG_ 0 0 0 REV__ENSG00000101138|ENST00000217109|CSTF1 REV__ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS UPN46_class_I_Rep_3 1 543.7825317382812 2 543.782556 1085.55056 0.32446 0.00017643 0.18797 0.00010221 0.51242 0.00027865 543.7825629512275 49.644 0.87021 49.644 49.275 50.145 0 201 93 3 0 0 0 0.52083 1 10500 10500 9.3831 2.66 1 1054900 + 12588 18150 7950 7956 15564 15564 0.01120554954900399 HQTGVLIFDG 10 Unmodified _HQTGVLIFDG_ 0 0 0 REV__ENSG00000101138|ENST00000217109|CSTF1 REV__ENSG00000101138|ENST00000217109|CSTF1 MSMS UPN47_class_I_Rep_1 2 543.7827758789062 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 46.609 1 50.309 49.809 50.809 3.6999 0 0 0 0.53105 1 9902 9902 9.3831 2.0939 1 + 12589 18150 7950 7956 15565 15565 0.01120554954900399 HQTGVLIFDG 10 Unmodified _HQTGVLIFDG_ 0 0 0 REV__ENSG00000101138|ENST00000217109|CSTF1 REV__ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS UPN47_class_I_Rep_2 3 543.782470703125 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.52083 1 9766 9766 9.3831 2.66 1 7409700 + 12590 18150 7950 7956 15566 15566 0.01120554954900399 HQTIEQMDEY 10 Unmodified _HQTIEQMDEY_ 0 0 0 REV__nc|ENSG00000104419|Q92597-2|NDRG1 REV__nc|ENSG00000104419|Q92597-2|NDRG1 MULTI-MSMS UPN47_class_I_Rep_1 2 431.8518981933594 3 431.852049 1292.53432 -0.3929 -0.00016967 0.15854 6.8466E-05 -0.23436 -0.00010121 431.852063790895 39.742 1.5409 43.409 42.972 44.513 3.6668 369 118 4 0 0 0 0.54822 2 7754 7754;7831 3.0723 3.0723 1 988800 + 12591 18257 7951 7957 15567;15568 15567 -0.10024939064146565 HQTLPSYGGP 10 Unmodified _HQTLPSYGGP_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MSMS UPN46_class_I_Rep_3 1 528.7591552734375 2 528.759081 1055.50361 NaN NaN NaN NaN NaN NaN NaN 30.054 1 30.054 29.554 30.554 0 0 0 0 0.53105 1 4841 4841 6.2058 1.4498 1 12592 4233 7952 7958 15569 15569 -0.021923045962239485 HQVHRLHA 8 Unmodified _HQVHRLHA_ 0 0 0 THE1A-int_dup242|chr3:15549419-15550990:+|1.1904278863906472|0.0398520818577046|4.9|151.0|80|3|anti-sense THE1A-int_dup242|chr3:15549419-15550990:+|1.1904278863906472|0.0398520818577046|4.9|151.0|80|3|anti-sense THE1A-int_dup242|chr3:15549419-15550990:+|1.1904278863906472|0.0398520818577046|4.9|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_2 6 499.2758483886719 2 499.275567 996.53658 NaN NaN NaN NaN NaN NaN NaN 53.982 1 57.563 57.063 58.063 3.5817 0 0 0 0.40625 1 11365 11365 2.3027 0 1 12593 32868 7953 7959 15570 15570 0.03817367037117947 HQVIYFLLYT 10 Unmodified _HQVIYFLLYT_ 0 0 0 L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|67|1|anti-sense L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|67|1|anti-sense L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_2 3 648.851318359375 2 648.852981 1295.69141 NaN NaN NaN NaN NaN NaN NaN 53.377 1 56.703 56.203 57.203 3.3266 0 0 0 0.53105 1 11981 11981 2.9952 1.151 1 12594 14919 7954 7960 15571 15571 0.055391336083403075 HQVKQLTY 8 Unmodified _HQVKQLTY_ 0 0 0 L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|27|1|sense L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|27|1|sense L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|27|1|sense MSMS UPN46_class_I_Rep_3 1 508.7884216308594 2 508.779816 1015.54508 NaN NaN NaN NaN NaN NaN NaN 31.504 1 31.504 31.004 32.004 0 0 0 0 0.40157 1 5272 5272 7.2892 0 1 12595 8792 7955 7961 15572 15572 0.037928761630723784 HQVTVAQSY 9 Unmodified _HQVTVAQSY_ 0 0 0 ENSG00000115145|ENST00000263904|STAM2 ENSG00000115145|ENST00000263904|STAM2 ENSG00000115145|ENST00000263904|STAM2 MULTI-MSMS UPN46_class_I_Rep_3 1 516.7593383789062 2 516.759081 1031.50361 0.098254 5.0774E-05 0.39542 0.00020434 0.49367 0.00025511 516.7592051519438 31.478 0.51912 31.478 31.347 31.867 0 64 35 2 0 0 0 0.12795 3 5301 5260;5301;5345 28.495 8.08 1 108880 12596 2111 7956 7962 15573;15574;15575 15574 -0.010883045962373217 HQVVAVRAFH 10 Unmodified _HQVVAVRAFH_ 0 0 0 REV__nc|ENSG00000163359|P12111-4|COL6A3 REV__nc|ENSG00000163359|P12111-4|COL6A3 MSMS UPN47_class_I_Rep_3 4 582.3246459960938 2 582.325257 1162.63596 NaN NaN NaN NaN NaN NaN NaN 65.24 1 68.42 67.92 68.92 3.1795 0 0 0 0.53105 1 15657 15657 3.2813 0.54611 1 + 12597 17464 7957 7963 15576 15576 0.06114764931226091 HQWVQLDRG 9 Unmodified _HQWVQLDRG_ 0 0 0 REV__L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|3|1|sense REV__L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 569.7901611328125 2 569.791247 1137.56794 NaN NaN NaN NaN NaN NaN NaN 37.154 1 40.817 40.317 41.317 3.663 0 0 0 0.39518 1 6229 6229 1.8442 0.36234 1 + 12598 28272 7958 7964 15577 15577 0.004658952805584704 HQYRFMYY 8 Unmodified _HQYRFMYY_ 0 0 0 L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|96|3|sense L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|96|3|sense L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|96|3|sense MSMS UPN48_class_I_Rep_3 7 604.2730102539062 2 604.271301 1206.52805 NaN NaN NaN NaN NaN NaN NaN 31.799 1 35.5 35 36 3.7015 0 0 0 0.40746 1 4753 4753 0.69038 0 1 12599 11220 7959 7965 15578 15578 -0.06695367714360145 HQYSSGILPY 10 Unmodified _HQYSSGILPY_ 0 0 0 L1MB2_dup1689|chr3:182928111-182929233:+|1.067319296839374|0.0528323555573012|4.34|151.0|71|2|anti-sense L1MB2_dup1689|chr3:182928111-182929233:+|1.067319296839374|0.0528323555573012|4.34|151.0|71|2|anti-sense L1MB2_dup1689|chr3:182928111-182929233:+|1.067319296839374|0.0528323555573012|4.34|151.0|71|2|anti-sense MSMS UPN47_class_I_Rep_1 2 582.7883911132812 2 582.787838 1163.56112 NaN NaN NaN NaN NaN NaN NaN 49.357 1 53.016 52.516 53.516 3.6592 0 0 0 0.53105 1 10730 10730 3.9444 1.6417 1 12600 10217 7960 7966 15579 15579 -0.014114623906607449 HRAAVRLR 8 Unmodified _HRAAVRLR_ 0 0 0 ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 MSMS UPN46_class_I_Rep_3 1 489.8277282714844 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 25.048 1 25.048 24.548 25.548 0 0 0 0 0.40746 1 3377 3377 0.69038 0 1 12601 1422 7961 7967 15580 15580 0.1098193282517741 HRAHFTPLL 9 Unmodified _HRAHFTPLL_ 0 0 0 L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|1|1|sense L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|1|1|sense L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.3097534179688 2 546.309075 1090.6036 0.42785 0.00023374 -0.27843 -0.00015211 0.14942 8.163E-05 546.3088022938408 75.019 0.47368 78.331 77.998 78.471 3.3127 143 53 4 0 0 0 0.26948 1 18429 18429 15.847 15.847 1 585510 12602 15040 7962 7968 15581 15581 0.0619197752821492 HRDDCDCC 8 Unmodified _HRDDCDCC_ 0 0 0 REV__ENST00000497446.5_1_7:107334108-107335121:+|nuORF REV__ENST00000497446.5_1_7:107334108-107335121:+|nuORF MSMS UPN47_class_I_Rep_1 2 483.646484375 2 483.646762 965.27897 NaN NaN NaN NaN NaN NaN NaN 90.091 1 93.781 93.281 94.281 3.6899 0 0 0 0.40753 1 22517 22517 0.6015 0.6015 1 + 12603 21595 7963 7969 15582 15582 -0.20505822004895435 HRDHQRSR 8 Unmodified _HRDHQRSR_ 0 0 0 ENSG00000139370|ENST00000266771|SLC15A4;nc|ENSG00000139370|Q8N697-2|SLC15A4 ENSG00000139370|ENST00000266771|SLC15A4 ENSG00000139370|ENST00000266771|SLC15A4 MSMS UPN47_class_I_Rep_3 4 546.279052734375 2 546.281912 1090.54927 NaN NaN NaN NaN NaN NaN NaN 35.517 1 38.772 38.272 39.272 3.2547 0 0 0 0.40472 1 6588 6588 4.3292 0 1 12604 3138 7964 7970 15583 15583 0.007617784293643126 HRDRVHHV 8 Unmodified _HRDRVHHV_ 0 0 0 AluSx_dup80002|chr13:28039549-28039847:-|1.130758695811624|0.0025863360373015|8.77|149.0|12|1|anti-sense AluSx_dup80002|chr13:28039549-28039847:-|1.130758695811624|0.0025863360373015|8.77|149.0|12|1|anti-sense AluSx_dup80002|chr13:28039549-28039847:-|1.130758695811624|0.0025863360373015|8.77|149.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2847900390625 2 528.283923 1054.55329 NaN NaN NaN NaN NaN NaN NaN 30.985 1 34.62 34.12 35.12 3.6351 0 0 0 0.40738 1 4609 4609 0.79363 0 1 12605 299 7965 7971 15584 15584 0.028198679230627022 HREKIGVHV 9 Unmodified _HREKIGVHV_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MSMS UPN47_class_I_Rep_1 2 537.813232421875 2 537.811982 1073.60941 NaN NaN NaN NaN NaN NaN NaN 108.7 1 112.33 111.83 112.83 3.6355 0 0 0 0.37692 1 26733 26733 6.2058 0.47393 1 12606 4124 7966 7972 15585 15585 0.07555076039898267 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.6162414550781 3 487.616371 1459.82728 -0.33063 -0.00016122 -0.67064 -0.00032701 -1.0013 -0.00048823 487.6159794115387 22.983 0.3515 26.687 26.556 26.908 3.7042 44 32 2 0 0 0 0.56337 1 2773 2773 1.4551 0.44154 1 84232 + 12607 29484 7967 7973 15586 15586 0.11576265962321486 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MSMS UPN47_class_I_Rep_1 2 487.615966796875 3 487.616371 1459.82728 NaN NaN NaN NaN NaN NaN NaN 23.533 1 27.239 26.739 27.739 3.7065 0 0 0 0.53105 1 2925 2925 0.62683 0.17231 1 + 12608 29484 7967 7973 15587 15587 0.11576265962321486 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 488.2429504394531 3 487.616371 1459.82728 -0.32786 -0.00015987 -0.5167 -0.00025195 -0.84456 -0.00041182 487.616068848543 23.78 0.21983 27.51 27.362 27.582 3.7298 24 17 2 0 0 0 0.84575 1 2975 2975 0.50596 0.09769 1 44512 + 12609 29484 7967 7973 15588 15588 0.11576265962321486 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 488.23028564453125 3 487.616371 1459.82728 -0.3272 -0.00015955 -0.4214 -0.00020548 -0.7486 -0.00036503 487.6160233922754 23.936 0.15074 27.666 27.582 27.733 3.7298 14 13 2 0 0 0 0.84575 1 3024 3024 0.62683 0.17231 1 33772 + 12610 29484 7967 7973 15589 15589 0.11576265962321486 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 487.616371 1459.82728 -0.33063 -0.00016122 -0.67064 -0.00032701 -1.0013 -0.00048823 487.6159794115387 22.983 0.3515 26.687 26.556 26.908 3.7042 -0.19645 0.00044044 NaN 1.4551 44 32 2 NaN NaN NaN NaN 0 NaN NaN 0 84232 + 12611 29484 7967 7973 0.11576265962321486 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 487.616371 1459.82728 -0.13838 -6.7477E-05 -1.4511 -0.00070759 -1.5895 -0.00077506 487.61592130607556 24.146 0.21701 27.612 27.477 27.694 3.4655 -0.027021 -0.00069432 NaN 0.62683 28 17 3 NaN NaN NaN NaN 0 NaN NaN 0 38934 + 12612 29484 7967 7973 0.11576265962321486 HRERYKRLRF 10 Unmodified _HRERYKRLRF_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|138|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 487.616371 1459.82728 -0.13948 -6.8014E-05 -1.13 -0.00055101 -1.2695 -0.00061903 487.61593613334253 23.614 0.90807 27.08 26.569 27.477 3.4655 0.19645 -0.00023156 NaN 1.4551 106 81 2 NaN NaN NaN NaN 0 NaN NaN 0 57210 + 12613 29484 7967 7973 0.11576265962321486 HRFALLLLN 9 Unmodified _HRFALLLLN_ 0 0 0 REV__THE1B_dup7264|chr5:55436235-55436581:+|2.0091433054438763|0.2357906456709826|3.09|151.0|3|1|sense REV__THE1B_dup7264|chr5:55436235-55436581:+|2.0091433054438763|0.2357906456709826|3.09|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 548.7947998046875 2 548.834926 1095.6553 0.043623 2.3942E-05 0.15615 8.5702E-05 0.19978 0.00010964 548.8348616059552 25.904 0.12648 25.904 25.853 25.979 0 15 8 3 0 0 0 0.12462 1 3615 3615 1.8442 0 1 287570 + 12614 32235 7968 7974 15590 15590 0.11129721222164335 HRFFRRSV 8 Unmodified _HRFFRRSV_ 0 0 0 nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 MSMS UPN47_class_I_Rep_1 2 552.8118896484375 2 552.812316 1103.61008 NaN NaN NaN NaN NaN NaN NaN 18.762 1 22.343 21.843 22.843 3.5806 0 0 0 0.40753 1 1626 1626 0.6015 0 1 12615 16627 7969 7975 15591 15591 0.06241915479608906 HRFKRFPW 8 Unmodified _HRFKRFPW_ 0 0 0 ENSG00000140743.8,CDR2,chr16,-,I10.1,22365015,22374230|29|6.38|1|intron ENSG00000140743.8,CDR2,chr16,-,I10.1,22365015,22374230|29|6.38|1|intron ENSG00000140743.8,CDR2,chr16,-,I10.1,22365015,22374230|29|6.38|1|intron MSMS UPN47_class_I_Rep_2 3 587.3272094726562 2 587.32506 1172.63557 NaN NaN NaN NaN NaN NaN NaN 60.933 1 64.198 63.698 64.698 3.2654 0 0 0 0.40746 1 14287 14287 0.69038 0.088878 1 12616 3190 7970 7976 15592 15592 0.05615390002026288 HRFKVHNY 8 Unmodified _HRFKVHNY_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MSMS UPN47_class_I_Rep_3 4 550.7899780273438 2 550.79105 1099.56755 NaN NaN NaN NaN NaN NaN NaN 48.455 1 51.69 51.19 52.19 3.2345 0 0 0 0.40625 1 10536 10536 2.3027 0 1 12617 4059 7971 7977 15593 15593 0.02174520351377396 HRFLQQHF 8 Unmodified _HRFLQQHF_ 0 0 0 HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|46|3|sense HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|46|3|sense HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|46|3|sense MSMS UPN48_class_I_Rep_2 6 556.7905883789062 2 556.79105 1111.56755 NaN NaN NaN NaN NaN NaN NaN 51.328 1 54.996 54.496 55.496 3.6679 0 0 0 0.40625 1 10569 10569 2.3027 0 1 12618 8056 7972 7978 15594 15594 0.01622520351361345 HRFLSKYR 8 Unmodified _HRFLSKYR_ 0 0 0 REV__L1MEc_dup18260|chr22:40062533-40063691:-|2.787151800796335|0.0159986408145801|7.44|151.0|59|2|anti-sense REV__L1MEc_dup18260|chr22:40062533-40063691:-|2.787151800796335|0.0159986408145801|7.44|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 553.81396484375 2 553.814525 1105.6145 NaN NaN NaN NaN NaN NaN NaN 60.034 1 63.551 63.051 64.051 3.5169 0 0 0 0.40753 1 13154 13154 0.6015 0 1 + 12619 28420 7973 7979 15595 15595 0.0659137990248837 HRFPTLEMPL 10 Unmodified _HRFPTLEMPL_ 0 0 0 REV__MER4D_dup1232|chr19:11925760-11926087:-|2.351135294254006|0.2387530202398827|3.3|151.0|9|3|sense REV__MER4D_dup1232|chr19:11925760-11926087:-|2.351135294254006|0.2387530202398827|3.3|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 620.8313598632812 2 620.828983 1239.64341 NaN NaN NaN NaN NaN NaN NaN 70.169 1 73.682 73.182 74.182 3.5128 0 0 0 0.53105 1 16218 16218 1.4819 0 1 + 12620 31360 7974 7980 15596 15596 0.033177364166476764 HRFSPFFFF 9 Unmodified _HRFSPFFFF_ 0 0 0 HAL1_dup6625|chr4:139812260-139814004:+|2.2702244136747165|0.0205816021546801|6.79|151.0|67|1|anti-sense HAL1_dup6625|chr4:139812260-139814004:+|2.2702244136747165|0.0205816021546801|6.79|151.0|67|1|anti-sense HAL1_dup6625|chr4:139812260-139814004:+|2.2702244136747165|0.0205816021546801|6.79|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_3 4 616.307373046875 2 616.306001 1230.59745 NaN NaN NaN NaN NaN NaN NaN 38.637 1 41.878 41.378 42.378 3.2414 0 0 0 0.39428 1 7545 7545 2.0598 0.57785 1 12621 7903 7975 7981 15597 15597 -0.008625407032923249 HRFVGRINV 9 Unmodified _HRFVGRINV_ 0 0 0 L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|135|3|anti-sense L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|135|3|anti-sense L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|135|3|anti-sense MSMS UPN47_class_I_Rep_1 2 549.3179931640625 2 549.319974 1096.6254 NaN NaN NaN NaN NaN NaN NaN 92.075 1 95.796 95.296 96.296 3.7209 0 0 0 0.39518 1 22958 22958 1.8442 0.36234 1 12622 14838 7976 7982 15598 15598 0.08094782276816659 HRGDRVKV 8 Unmodified _HRGDRVKV_ 0 0 0 ENST00000498519.5_1_11:70544286-70653194:-|nuORF;ENST00000470759.5_1_11:70500478-70653149:-|nuORF;ENST00000468619.5_1_11:70515690-70672680:-|nuORF;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2 ENST00000498519.5_1_11:70544286-70653194:-|nuORF ENST00000498519.5_1_11:70544286-70653194:-|nuORF MSMS UPN48_class_I_Rep_1 5 483.7847900390625 2 483.783225 965.551896 NaN NaN NaN NaN NaN NaN NaN 65.544 1 68.996 68.496 69.496 3.4516 0 0 0 0.40625 1 14919 14919 2.3027 0.4585 1 12623 3919 7977 7983 15599 15599 0.06774233834323695 HRGKRCLY 8 Unmodified _HRGKRCLY_ 0 0 0 REV__LTR5A_dup233|chr12:133095472-133096478:-|1.1464213418263336|0.4113143240979249|1.48|151.0|26|3|sense REV__LTR5A_dup233|chr12:133095472-133096478:-|1.1464213418263336|0.4113143240979249|1.48|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 516.77685546875 2 516.779628 1031.5447 NaN NaN NaN NaN NaN NaN NaN 41.043 1 44.408 43.908 44.908 3.3655 0 0 0 0.40404 1 8231 8231 5.2307 0.47466 1 + 12624 30977 7978 7984 15600 15600 0.030191779622327886 HRGKSVSV 8 Unmodified _HRGKSVSV_ 0 0 0 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 MULTI-MSMS UPN46_class_I_Rep_3 1 435.2505798339844 2 435.251226 868.487899 0.11014 4.7938E-05 -0.32721 -0.00014242 -0.21707 -9.4482E-05 435.25098113718747 73.499 0.57475 73.499 73.097 73.672 0 119 60 3 0 0 0 0.82752 1 17081 17081 2.3027 0.82083 1 261130 12625 591 7979 7985 15601 15601 0.04839453677379879 HRGKSVSV 8 Unmodified _HRGKSVSV_ 0 0 0 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 MULTI-MSMS UPN47_class_I_Rep_3 4 435.2509460449219 2 435.251226 868.487899 -0.4012 -0.00017462 -0.15926 -6.9317E-05 -0.56046 -0.00024394 435.25102546217005 71.164 1.8647 74.382 72.91 74.775 3.2188 221 159 2 0 0 0 0.82752 1 17209 17209 2.3027 1.5091 1 332500 12626 591 7979 7985 15602 15602 0.04839453677379879 HRGKSVSV 8 Unmodified _HRGKSVSV_ 0 0 0 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 chr17:16194639-16197863|106|10.3|0.52|4.31|-|0|TE_info:L1ME4b,L1ME4b_dup18820,L1,LINE,donor,-,16197863,16198073|NCOR1,None|1 MULTI-MSMS UPN47_class_I_Rep_3 4 435.2510070800781 2 435.251226 868.487899 -0.39816 -0.0001733 -0.014521 -6.3203E-06 -0.41268 -0.00017962 435.25112339657005 71.827 0.72754 75.046 74.775 75.502 3.2188 97 60 2 0 0 0 0.82752 1 17619 17619 2.3027 2.3027 1 139050 12627 591 7979 7985 15603 15603 0.04839453677379879 HRGPKKHK 8 Unmodified _HRGPKKHK_ 0 0 0 REV__L1MA8_dup7989|chr12:65426162-65427660:-|1.0659266236578069|0.0249205534838347|5.42|148.0|22|2|sense REV__L1MA8_dup7989|chr12:65426162-65427660:-|1.0659266236578069|0.0249205534838347|5.42|148.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 494.30145263671875 2 494.301585 986.588616 0.17447 8.6243E-05 -1.0127 -0.00050059 -0.83825 -0.00041435 494.30097935494024 89.516 0.14133 93.141 93.084 93.225 3.6255 19 13 3 0 0 0 0.82752 1 21501 21501 0.69038 0 1 71530 + 12628 25574 7980 7986 15604 15604 0.09478530450883227 HRGPKKHK 8 Unmodified _HRGPKKHK_ 0 0 0 REV__L1MA8_dup7989|chr12:65426162-65427660:-|1.0659266236578069|0.0249205534838347|5.42|148.0|22|2|sense REV__L1MA8_dup7989|chr12:65426162-65427660:-|1.0659266236578069|0.0249205534838347|5.42|148.0|22|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 494.301585 986.588616 0.30518 0.00015085 -1.3185 -0.00065174 -1.0133 -0.00050089 494.30094866276676 93.045 0.07756 93.045 92.979 93.057 0 -0.063376 -0.0002459 NaN 0.69038 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 161760 + 12629 25574 7980 7986 0.09478530450883227 HRGPKKHK 8 Unmodified _HRGPKKHK_ 0 0 0 REV__L1MA8_dup7989|chr12:65426162-65427660:-|1.0659266236578069|0.0249205534838347|5.42|148.0|22|2|sense REV__L1MA8_dup7989|chr12:65426162-65427660:-|1.0659266236578069|0.0249205534838347|5.42|148.0|22|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 494.301585 986.588616 0.27398 0.00013543 -0.9416 -0.00046543 -0.66761 -0.00033 494.3011024043886 89.4 0.35628 93.138 92.983 93.339 3.7379 0.0301 0.00012672 NaN 0.69038 49 35 2 NaN NaN NaN NaN 0 NaN NaN 0 117630 + 12630 25574 7980 7986 0.09478530450883227 HRGRKWLP 8 Unmodified _HRGRKWLP_ 0 0 0 L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|10|3|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|10|3|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|10|3|sense MSMS UPN47_class_I_Rep_1 2 525.3104858398438 2 525.30941 1048.60427 NaN NaN NaN NaN NaN NaN NaN 97.461 1 101.25 100.75 101.75 3.7861 0 0 0 0.40746 1 24151 24151 0.69038 0 1 12631 10921 7981 7987 15605 15605 0.08190816967930914 HRGRKWLP 8 Unmodified _HRGRKWLP_ 0 0 0 L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|10|3|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|10|3|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 525.3071899414062 2 525.30941 1048.60427 NaN NaN NaN NaN NaN NaN NaN 47.803 1 51.539 51.039 52.039 3.7361 0 0 0 0.40604 1 9482 9482 2.5775 0.27475 1 12632 10921 7981 7987 15606 15606 0.08190816967930914 HRHTRLKNRRI 11 Unmodified _HRHTRLKNRRI_ 0 0 0 REV__LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|9|1|sense REV__LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.6372985839844 3 496.302786 1485.88653 0.30685 0.00015229 0.36313 0.00018022 0.66998 0.00033251 496.63721193309436 107.25 0.055603 107.25 107.21 107.26 0 10 6 2 0 0 0 0.68478 1 26162 26162 0.094841 0 1 77822 + 12633 30810 7982 7988 15607 15607 0.16302161976523166 HRHVHLQP 8 Unmodified _HRHVHLQP_ 0 0 0 ENST00000519685.5_1_8:22865572-22868139:+|nuORF ENST00000519685.5_1_8:22865572-22868139:+|nuORF ENST00000519685.5_1_8:22865572-22868139:+|nuORF MSMS UPN48_class_I_Rep_1 5 512.2819213867188 2 512.283392 1022.55223 NaN NaN NaN NaN NaN NaN NaN 101.07 1 104.68 104.18 105.18 3.612 0 0 0 0.40625 1 24403 24403 2.3027 0.24298 1 12634 7220 7983 7989 15608 15608 0.041856535541683115 HRIKQRPQ 8 Unmodified _HRIKQRPQ_ 0 0 0 REV__ENSG00000145246|ENST00000273859|ATP10D REV__ENSG00000145246|ENST00000273859|ATP10D MULTI-SECPEP UPN48_class_I_Rep_1 5 531.8172607421875 2 531.817599 1061.62064 0.35201 0.0001872 -0.79193 -0.00042116 -0.43993 -0.00023396 531.8170853237852 79.499 0.50018 83.048 82.926 83.426 3.5487 99 55 2 0 0 0 0.72333 1 19016 19016 0.6015 0 1 181140 + 12635 19510 7984 7990 15609 15609 0.09229898134026371 HRKGTVKKNG 10 Unmodified _HRKGTVKKNG_ 0 0 0 Tigger3_dup712|chrX:109713928-109714880:+|1.0428347067153572|0.0132564966793276|6.3|151.0|63|3|anti-sense Tigger3_dup712|chrX:109713928-109714880:+|1.0428347067153572|0.0132564966793276|6.3|151.0|63|3|anti-sense Tigger3_dup712|chrX:109713928-109714880:+|1.0428347067153572|0.0132564966793276|6.3|151.0|63|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.836669921875 2 562.835988 1123.65742 0.50502 0.00028425 1.3599 0.00076539 1.8649 0.0010496 562.8363553338088 109.35 0.78122 112.95 112.9 113.68 3.6046 136 103 2 0 0 0 0.56078 1 27054 27054 3.2813 0.28607 1 2346000 12636 33351 7985 7991 15610 15610 0.10054149959933056 HRKHRTAI 8 Unmodified _HRKHRTAI_ 0 0 0 ENST00000450993.6_1_2:219472530-219480430:+|nuORF ENST00000450993.6_1_2:219472530-219480430:+|nuORF ENST00000450993.6_1_2:219472530-219480430:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 509.80364990234375 2 509.804491 1017.59443 0.24059 0.00012265 -1.3874 -0.00070728 -1.1468 -0.00058463 509.8036068548662 75.527 0.56477 78.931 78.687 79.251 3.4034 64 53 2 0 0 0 0.82752 1 18631 18631 2.5775 0.27475 1 63915 12637 6811 7986 7992 15611 15611 0.08633628962536477 HRKHTRIY 8 Unmodified _HRKHTRIY_ 0 0 0 L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|36|2|sense L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|36|2|sense L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|36|2|sense MSMS UPN48_class_I_Rep_3 7 555.8195190429688 2 555.817599 1109.62064 NaN NaN NaN NaN NaN NaN NaN 68.638 1 72.148 71.648 72.648 3.5094 0 0 0 0.40404 1 15752 15752 5.2307 0 1 12638 12717 7987 7993 15612 15612 0.0702189813403038 HRKKHWYG 8 Unmodified _HRKKHWYG_ 0 0 0 REV__L1MA4_dup6706|chr10:37973613-37975398:+|1.243868969847621|0.1655058056098126|2.91|150.0|23|2|sense REV__L1MA4_dup6706|chr10:37973613-37975398:+|1.243868969847621|0.1655058056098126|2.91|150.0|23|2|sense MSMS UPN47_class_I_Rep_1 2 556.2979125976562 2 556.299042 1110.58353 NaN NaN NaN NaN NaN NaN NaN 102.99 1 106.77 106.27 107.27 3.7788 0 0 0 0.40738 1 25336 25336 0.79363 0.10326 1 + 12639 25196 7988 7994 15613 15613 0.03266226588266363 HRKKKQHRF 9 Unmodified _HRKKKQHRF_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MSMS UPN46_class_I_Rep_3 1 422.2349853515625 3 422.254773 1263.74249 NaN NaN NaN NaN NaN NaN NaN 48.38 1 48.38 47.88 48.88 0 0 0 0 0.39036 1 10076 10076 2.9952 1.403 1 12640 4738 7989 7995 15614 15614 0.12116940216401417 HRKKVHQWQ 9 Unmodified _HRKKVHQWQ_ 0 0 0 L1ME3A_dup15162|chr20:47512597-47512875:+|1.1382637144821577|0.0074002148231626|7.27|151.0|9|3|sense L1ME3A_dup15162|chr20:47512597-47512875:+|1.1382637144821577|0.0074002148231626|7.27|151.0|9|3|sense L1ME3A_dup15162|chr20:47512597-47512875:+|1.1382637144821577|0.0074002148231626|7.27|151.0|9|3|sense MSMS UPN46_class_I_Rep_3 1 623.8494262695312 2 623.84943 1245.68431 NaN NaN NaN NaN NaN NaN NaN 48.779 1 48.779 48.279 49.279 0 0 0 0 0.4007 1 10190 10190 0.52476 0 1 12641 12655 7990 7996 15615 15615 0.07129258571148966 HRKMDKMW 8 Unmodified _HRKMDKMW_ 0 0 0 REV__L1PA4_dup2618|chr4:9080579-9086679:+|1.166756520102404|0.0919900633115754|3.66|148.0|179|3|sense REV__L1PA4_dup2618|chr4:9080579-9086679:+|1.166756520102404|0.0919900633115754|3.66|148.0|179|3|sense MSMS UPN46_class_I_Rep_3 1 566.2803955078125 2 566.281146 1130.54774 NaN NaN NaN NaN NaN NaN NaN 24.043 1 24.043 23.543 24.543 0 0 0 0 0.40746 1 3105 3105 0.69038 0 1 + 12642 29615 7991 7997 15616 15616 -0.012313149752571917 HRKMRNNGK 9 Unmodified _HRKMRNNGK_ 0 0 0 REV__L1MA8_dup7665|chr11:102434020-102434906:-|2.2589471815228963|0.0236076562890998|6.58|151.0|17|2|sense REV__L1MA8_dup7665|chr11:102434020-102434906:-|2.2589471815228963|0.0236076562890998|6.58|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 571.2505493164062 2 570.81199 1139.60943 NaN NaN NaN NaN NaN NaN NaN 78.052 1 81.574 81.074 82.074 3.5221 0 0 0 0.39518 1 18604 18604 1.8442 0 1 + 12643 25571 7992 7998 15617 15617 0.0452075276823507 HRKRKRSGR 9 Unmodified _HRKRKRSGR_ 0 0 0 REV__nc|ENSG00000183837|Q9UL41-2|PNMA3 REV__nc|ENSG00000183837|Q9UL41-2|PNMA3 MSMS UPN48_class_I_Rep_1 5 590.8677368164062 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 96 1 99.613 99.113 100.11 3.6124 0 0 0 0.4007 1 23124 23124 0.52476 0 1 + 12644 20802 7993 7999 15618 15618 0.13466885413845375 HRKRQNRR 8 Unmodified _HRKRQNRR_ 0 0 0 REV__ENST00000429149.6_1_16:70680464-70680746:+|nuORF REV__ENST00000429149.6_1_16:70680464-70680746:+|nuORF MSMS UPN46_class_I_Rep_3 1 575.843505859375 2 575.842471 1149.67039 NaN NaN NaN NaN NaN NaN NaN 84.977 1 84.977 84.477 85.477 0 0 0 0 0.40746 1 20248 20248 0.69038 0.16561 1 + 12645 22284 7994 8000 15619 15619 0.10154025862675553 HRKSFAKAI 9 Unmodified _HRKSFAKAI_ 0 0 0 REV__ENSG00000128602|ENST00000249373|SMO REV__ENSG00000128602|ENST00000249373|SMO MULTI-MSMS UPN47_class_I_Rep_1 2 529.315673828125 2 529.3169 1056.61925 0.33909 0.00017948 -1.8963 -0.0010038 -1.5573 -0.00082428 529.3155622958633 57.745 0.20578 61.182 61.062 61.268 3.437 22 13 2 0 0 0 0.43153 1 13284 13284 6.2058 0.47393 1 61519 + 12646 18902 7995 8001 15620 15620 0.09320264045254589 HRKYWNWS 8 Unmodified _HRKYWNWS_ 0 0 0 REV__L1MDa_dup6517|chr20:3502260-3504394:+|2.670334275946741|0.0512666168730633|5.7|151.0|25|2|sense REV__L1MDa_dup6517|chr20:3502260-3504394:+|2.670334275946741|0.0512666168730633|5.7|151.0|25|2|sense MSMS UPN48_class_I_Rep_1 5 588.788818359375 2 588.788507 1175.56246 NaN NaN NaN NaN NaN NaN NaN 70.828 1 74.288 73.788 74.788 3.4598 0 0 0 0.40625 1 16526 16526 2.3027 0 1 + 12647 27547 7996 8002 15621 15621 -0.018297835112662142 HRLGGLEE 8 Unmodified _HRLGGLEE_ 0 0 0 MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|6|1|sense MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|6|1|sense MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 455.7401428222656 2 455.740691 909.466829 -0.49364 -0.00022497 0.33306 0.00015179 -0.16058 -7.3182E-05 455.7407883854083 20.266 0.26066 23.673 23.52 23.781 3.4074 34 26 2 0 0 0 0.82752 1 2084 2084 2.3027 0.24298 1 27877 12648 16550 7997 8003 15622 15622 0.008474435778452971 HRMSEDTF 8 Unmodified _HRMSEDTF_ 0 0 0 REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13 REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13 MSMS UPN47_class_I_Rep_3 4 511.7398986816406 2 511.721641 1021.42873 NaN NaN NaN NaN NaN NaN NaN 20.484 1 23.834 23.334 24.334 3.3496 0 0 0 0.40625 1 2122 2122 2.3027 0 1 + 12649 19901 7998 8004 15623 15623 -0.08112810399120463 HRNWDNTY 8 Unmodified _HRNWDNTY_ 0 0 0 MLT1F_dup3976|chr20:3885662-3886150:+|2.21498792022261|0.1794116780968885|3.63|151.0|16|2|sense MLT1F_dup3976|chr20:3885662-3886150:+|2.21498792022261|0.1794116780968885|3.63|151.0|16|2|sense MLT1F_dup3976|chr20:3885662-3886150:+|2.21498792022261|0.1794116780968885|3.63|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 553.2467651367188 2 553.244129 1104.47371 0.57911 0.00032039 2.5354 0.0014027 3.1145 0.0017231 553.2456131751508 58.99 0.25776 62.489 62.363 62.621 3.4987 23 17 2 0 0 0 0.82752 1 12930 12930 7.9102 0.62092 1 67636 12650 16383 7999 8005 15624 15624 -0.07435243541590353 HRNWKRRNNIV 11 Unmodified _HRNWKRRNNIV_ 0 0 0 L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|47|2|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|47|2|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|47|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 498.2201843261719 3 498.283392 1491.82835 -0.40243 -0.00020053 -0.94247 -0.00046962 -1.3449 -0.00067014 498.2826135998119 30.072 0.097357 33.383 33.298 33.395 3.3116 11 8 2 0 0 0 22.551 1 4945 4945 0.40827 0.2854 1 38671 12651 8764 8000 8006 15625 15625 0.10210480331284089 HRNWKRRNNIV 11 Unmodified _HRNWKRRNNIV_ 0 0 0 L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|47|2|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|47|2|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|47|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 498.283392 1491.82835 -0.16082 -8.0133E-05 -0.28249 -0.00014076 -0.44331 -0.00022089 498.2833767206882 29.769 0.047731 33.262 33.243 33.29 3.4923 -0.060751 0.00064266 NaN 0.40827 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 34633 12652 8764 8000 8006 0.10210480331284089 HRPAPYEI 8 Unmodified _HRPAPYEI_ 0 0 0 ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 MULTI-SECPEP UPN47_class_I_Rep_3 4 491.27569580078125 2 491.758884 981.503215 0.1002 4.9273E-05 -0.52605 -0.00025869 -0.42586 -0.00020942 491.7586560537554 47.234 0.40907 50.478 50.218 50.627 3.2439 32 24 2 0 0 0 0.72333 1 10196 10196 5.2307 0 1 65997 12653 717 8001 8007 15626 15626 0.011723204745521798 HRPEQLLQ 8 Unmodified _HRPEQLLQ_ 0 0 0 REV__nc|ENSG00000106070|Q13322-2|GRB10 REV__nc|ENSG00000106070|Q13322-2|GRB10 MSMS UPN47_class_I_Rep_3 4 510.7843933105469 2 510.78289 1019.55123 NaN NaN NaN NaN NaN NaN NaN 43.321 1 46.563 46.063 47.063 3.2419 0 0 0 0.4044 1 8978 8978 4.756 0 1 + 12654 31955 8002 8008 15627 15627 0.04223394394614388 HRPIPRKL 8 Unmodified _HRPIPRKL_ 0 0 0 REV__L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|50|3|sense REV__L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|50|3|sense MSMS UPN47_class_I_Rep_2 3 508.8279724121094 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 101.05 1 104.56 104.06 105.06 3.5063 0 0 0 0.40738 1 24677 24677 0.79363 0 1 + 12655 25776 8003 8009 15628 15628 0.1331227414480054 HRPLEAWL 8 Unmodified _HRPLEAWL_ 0 0 0 L1M2_dup4959|chr9:90882655-90884134:+|11.351168732839412|0.1531024221396591|6.21|151.0|46|1|anti-sense L1M2_dup4959|chr9:90882655-90884134:+|11.351168732839412|0.1531024221396591|6.21|151.0|46|1|anti-sense L1M2_dup4959|chr9:90882655-90884134:+|11.351168732839412|0.1531024221396591|6.21|151.0|46|1|anti-sense MSMS UPN46_class_I_Rep_3 1 511.2845764160156 2 511.282526 1020.5505 NaN NaN NaN NaN NaN NaN NaN 65.147 1 65.147 64.647 65.647 0 0 0 0 0.40643 1 14711 14711 2.0598 0 1 12656 8695 8004 8010 15629 15629 0.04104599745562609 HRPRRRDRKLV 11 Unmodified _HRPRRRDRKLV_ 0 0 0 REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|4|1|sense REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 496.9744567871094 3 496.97467 1487.90218 0.17718 8.8054E-05 -0.15463 -7.6849E-05 0.022547 1.1205E-05 496.97454426682185 107.29 0.24809 110.92 110.7 110.95 3.6299 39 26 2 0 0 0 22.551 1 25824 25824 0.45452 0.046251 1 1813800 + 12657 31643 8005 8011 15630 15630 0.17774448493582895 HRPRRRDRKLV 11 Unmodified _HRPRRRDRKLV_ 0 0 0 REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|4|1|sense REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 496.9751892089844 3 496.97467 1487.90218 0.17732 8.8125E-05 0.37032 0.00018404 0.54765 0.00027217 496.97470992884786 106.88 0.14505 110.51 110.44 110.58 3.6299 22 18 2 0 0 0 22.551 1 25764 25764 0 0 1 157450 + 12658 31643 8005 8011 15631 15631 0.17774448493582895 HRQIQDKW 8 Unmodified _HRQIQDKW_ 0 0 0 MER4A1__dup358|chr17:29711883-29712426:-|3.509923328924533|0.0203329255027072|7.43|151.0|30|3|anti-sense MER4A1__dup358|chr17:29711883-29712426:-|3.509923328924533|0.0203329255027072|7.43|151.0|30|3|anti-sense MER4A1__dup358|chr17:29711883-29712426:-|3.509923328924533|0.0203329255027072|7.43|151.0|30|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 556.046875 2 555.793789 1109.57303 0.54399 0.00030234 4.002 0.0022243 4.546 0.0025266 555.7960641528382 31.737 0.095554 35.271 35.227 35.322 3.5342 12 9 2 0 0 0 0.72333 1 4724 4724 2.0598 0 1 85586 12659 16019 8006 8012 15632 15632 0.02262199143183352 HRQKKKMDHYL 11 Unmodified _HRQKKKMDHYL_ 0 0 0 L1MB1_dup5158|chr15:49947461-49948156:+|1.2209982111915454|0.0021017994072231|9.18|151.0|15|2|sense L1MB1_dup5158|chr15:49947461-49948156:+|1.2209982111915454|0.0021017994072231|9.18|151.0|15|2|sense L1MB1_dup5158|chr15:49947461-49948156:+|1.2209982111915454|0.0021017994072231|9.18|151.0|15|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 495.77227783203125 3 495.269872 1482.78779 0.24679 0.00012223 -0.88362 -0.00043763 -0.63682 -0.0003154 495.26922963821363 39.118 0.037338 39.118 39.098 39.135 0 6 4 2 0 0 0 22.551 1 7493 7493 0.094841 0 1 61474 12660 10195 8007 8013 15633 15633 0.06570377896650825 HRQKTEFPV 9 Unmodified _HRQKTEFPV_ 0 0 0 L1PB4_dup3323|chr7:156708119-156709896:+|1.3238637429843363|0.0358051600468854|5.21|151.0|15|2|sense L1PB4_dup3323|chr7:156708119-156709896:+|1.3238637429843363|0.0358051600468854|5.21|151.0|15|2|sense L1PB4_dup3323|chr7:156708119-156709896:+|1.3238637429843363|0.0358051600468854|5.21|151.0|15|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.810302734375 2 571.309272 1140.60399 0.26969 0.00015408 -0.38947 -0.00022251 -0.11979 -6.8435E-05 571.3090347274355 32.327 0.2973 32.327 32.236 32.533 0 30 21 2 0 0 0 0.49026 1 5539 5539 1.6526 0 1 59947 12661 15310 8008 8014 15634 15634 0.03931352457425419 HRQLVLNLFV 10 Unmodified _HRQLVLNLFV_ 0 0 0 REV__LTR86C_dup208|chr11:114068503-114069061:-|1.2836782832235711|0.1757459295952121|2.87|150.0|29|2|anti-sense REV__LTR86C_dup208|chr11:114068503-114069061:-|1.2836782832235711|0.1757459295952121|2.87|150.0|29|2|anti-sense MSMS UPN47_class_I_Rep_1 2 619.869384765625 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.094 1 90.731 90.231 91.231 3.6372 0 0 0 0.53105 1 21757 21757 3.5965 0.60125 1 + 12662 31032 8009 8015 15635 15635 0.12017064313636183 HRQRLLIW 8 Unmodified _HRQRLLIW_ 0 0 0 REV__ENST00000548924.5_1_12:70901743-70904223:+|nuORF REV__ENST00000548924.5_1_12:70901743-70904223:+|nuORF MSMS UPN47_class_I_Rep_1 2 561.721923828125 2 561.338167 1120.66178 NaN NaN NaN NaN NaN NaN NaN 75.872 1 79.275 78.775 79.775 3.4034 0 0 0 0.40738 1 18750 18750 0.79363 0 1 + 12663 22949 8010 8016 15636 15636 0.10627659173519532 HRQRRIRLFSF 11 Unmodified _HRQRRIRLFSF_ 0 0 0 ENST00000374875.5_1_10:33468482-33468866:-|nuORF ENST00000374875.5_1_10:33468482-33468866:-|nuORF ENST00000374875.5_1_10:33468482-33468866:-|nuORF MSMS UPN46_class_I_Rep_3 1 505.96282958984375 3 505.963771 1514.86948 NaN NaN NaN NaN NaN NaN NaN 50.755 1 50.755 50.255 51.255 0 0 0 0 0.38417 1 10742 10742 0.50596 0 1 12664 6435 8011 8017 15637 15637 0.13264241370734453 HRQRVSTL 8 Unmodified _HRQRVSTL_ 0 0 0 nc|ENSG00000058453|Q5TZA2-2|CROCC nc|ENSG00000058453|Q5TZA2-2|CROCC nc|ENSG00000058453|Q5TZA2-2|CROCC MSMS UPN47_class_I_Rep_3 4 498.7891845703125 2 498.788507 995.562461 NaN NaN NaN NaN NaN NaN NaN 62.848 1 66.018 65.518 66.518 3.1698 0 0 0 0.39996 1 14929 14929 7.9102 0 1 12665 16626 8012 8018 15638 15638 0.06450216488758542 HRRDACCV 8 Unmodified _HRRDACCV_ 0 0 0 REV__nc|ENSG00000030582|P28799-3|GRN REV__nc|ENSG00000030582|P28799-3|GRN MSMS UPN47_class_I_Rep_1 2 480.2161865234375 2 480.218546 958.422538 NaN NaN NaN NaN NaN NaN NaN 119.69 1 123.29 122.79 123.79 3.6036 0 0 0 0.40581 1 29751 29751 2.8892 2.0956 1 + 12666 17624 8013 8019 15639 15639 -0.05833607111640049 HRRDACCV 8 Unmodified _HRRDACCV_ 0 0 0 REV__nc|ENSG00000030582|P28799-3|GRN REV__nc|ENSG00000030582|P28799-3|GRN MSMS UPN48_class_I_Rep_1 5 480.2167663574219 2 480.218546 958.422538 NaN NaN NaN NaN NaN NaN NaN 114.45 1 118.08 117.58 118.58 3.6301 0 0 0 0.40581 1 27824 27824 2.8892 2.0956 1 + 12667 17624 8013 8019 15640 15640 -0.05833607111640049 HRRGRVLH 8 Unmodified _HRRGRVLH_ 0 0 0 ENST00000519067.5_1_8:142225870-142228200:-|nuORF ENST00000519067.5_1_8:142225870-142228200:-|nuORF ENST00000519067.5_1_8:142225870-142228200:-|nuORF MSMS UPN48_class_I_Rep_1 5 515.8106689453125 2 515.810108 1029.60566 NaN NaN NaN NaN NaN NaN NaN 38.329 1 41.835 41.335 42.335 3.5052 0 0 0 0.40746 1 6627 6627 0.69038 0 1 12668 7218 8014 8020 15641 15641 0.0920445105671206 HRRKRRERPAI 11 Unmodified _HRRKRRERPAI_ 0 0 0 ENST00000462274.1_1_21:38739279-38845117:+|nuORF ENST00000462274.1_1_21:38739279-38845117:+|nuORF ENST00000462274.1_1_21:38739279-38845117:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 492.3024597167969 3 492.302786 1473.88653 0.16006 7.8797E-05 0.23622 0.00011629 0.39627 0.00019509 492.30280100267373 100.24 0.25513 103.84 103.72 103.97 3.6084 46 32 2 0 0 0 0.68478 1 24225 24225 0.094841 0.094841 1 106860 12669 6866 8015 8021 15642 15642 0.16854161976539217 HRRLKTMKK 9 Unmodified _HRRLKTMKK_ 0 0 0 HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN46_class_I_Rep_3 1 599.3716430664062 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 81.418 1 81.418 80.918 81.918 0 0 0 0 0.4007 1 19227 19227 0.52476 0 1 12670 8178 8016 8022 15643 15643 0.13831946392951977 HRRLKTMKK 9 Unmodified _HRRLKTMKK_ 0 0 0 HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN47_class_I_Rep_1 2 599.373291015625 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 86.545 1 90.161 89.661 90.661 3.6153 0 0 0 0.4007 1 21620 21620 0.52476 0 1 12671 8178 8016 8022 15644 15644 0.13831946392951977 HRRLKTMKK 9 Unmodified _HRRLKTMKK_ 0 0 0 HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN47_class_I_Rep_2 3 599.3731689453125 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 86.161 1 89.594 89.094 90.094 3.4329 0 0 0 0.4007 1 21433 21433 0.52476 0 1 12672 8178 8016 8022 15645 15645 0.13831946392951977 HRRLKTMKK 9 Unmodified _HRRLKTMKK_ 0 0 0 HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN47_class_I_Rep_2 3 599.3726806640625 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 92.897 1 96.365 95.865 96.865 3.4687 0 0 0 0.4007 1 22945 22945 0.52476 0 1 12673 8178 8016 8022 15646 15646 0.13831946392951977 HRRLKTMKK 9 Unmodified _HRRLKTMKK_ 0 0 0 HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN48_class_I_Rep_2 6 599.372314453125 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 84.176 1 87.87 87.37 88.37 3.6937 0 0 0 0.4007 1 20032 20032 0.52476 0 1 12674 8178 8016 8022 15647 15647 0.13831946392951977 HRRLRHKHH 9 Unmodified _HRRLRHKHH_ 0 0 0 L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|80|3|sense L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|80|3|sense L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|80|3|sense MSMS UPN48_class_I_Rep_1 5 638.8734741210938 2 638.871563 1275.72857 NaN NaN NaN NaN NaN NaN NaN 83.264 1 86.851 86.351 87.351 3.5871 0 0 0 0.4007 1 19910 19910 0.52476 0 1 12675 9789 8017 8023 15648 15648 0.10173707507965446 HRRQLFTQ 8 Unmodified _HRRQLFTQ_ 0 0 0 REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|28|2|sense REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|28|2|sense MSMS UPN46_class_I_Rep_3 1 543.3018188476562 2 543.301781 1084.58901 NaN NaN NaN NaN NaN NaN NaN 55.922 1 55.922 55.422 56.422 0 0 0 0 0.40643 1 12175 12175 2.0598 0 1 + 12676 28968 8018 8024 15649 15649 0.050099053800977345 HRRRIYSR 8 Unmodified _HRRRIYSR_ 0 0 0 REV__Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|34|3|sense REV__Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 572.3352661132812 2 572.333947 1142.65334 NaN NaN NaN NaN NaN NaN NaN 60.478 1 63.643 63.143 64.143 3.1651 0 0 0 0.40659 1 14205 14205 1.8442 0 1 + 12677 32740 8019 8025 15650 15650 0.08772105256889517 HRRRKNQR 8 Unmodified _HRRRKNQR_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MSMS UPN48_class_I_Rep_3 7 576.0261840820312 2 575.842471 1149.67039 NaN NaN NaN NaN NaN NaN NaN 84.182 1 87.91 87.41 88.41 3.7281 0 0 0 0.40625 1 19974 19974 2.3027 0.82083 1 12678 3256 8020 8026 15651 15651 0.10154025862675553 HRRSALGITV 10 Unmodified _HRRSALGITV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MSMS UPN48_class_I_Rep_2 6 555.329345703125 2 555.330539 1108.64652 NaN NaN NaN NaN NaN NaN NaN 100.33 1 104.07 103.57 104.57 3.7417 0 0 0 0.53105 1 23829 23829 2.9952 1.151 1 12679 1196 8021 8027 15652 15652 0.09654747585636869 HRRSLSLLKE 10 Unmodified _HRRSLSLLKE_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.8688354492188 2 619.870028 1237.7255 0.65578 0.0004065 -1.196 -0.00074134 -0.54019 -0.00033485 619.8692225564062 90.344 0.14626 90.344 90.279 90.425 0 25 13 2 0 0 0 0.56078 1 21782 21782 3.2813 0 1 313340 + 12680 23832 8022 8028 15653 15653 0.11614974819917734 HRRSLSLLKE 10 Unmodified _HRRSLSLLKE_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 619.870028 1237.7255 0.49411 0.00030629 -1.1112 -0.0006888 -0.61708 -0.00038251 619.8693100951031 87.034 1.4847 90.414 90.011 91.496 3.3801 -0.058977 0.00011709 NaN 3.2813 275 181 2 NaN NaN NaN NaN 0 NaN NaN 0 202940 + 12681 23832 8022 8028 0.11614974819917734 HRRSLSLLKE 10 Unmodified _HRRSLSLLKE_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 619.870028 1237.7255 0.4916 0.00030473 -1.0457 -0.0006482 -0.55409 -0.00034347 619.8692042665751 86.953 0.3504 90.67 90.598 90.949 3.7171 0.1967 0.0001983 NaN 3.2813 83 48 3 NaN NaN NaN NaN 0 NaN NaN 0 284750 + 12682 23832 8022 8028 0.11614974819917734 HRRSLSLLKE 10 Unmodified _HRRSLSLLKE_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|21|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 619.870028 1237.7255 0.60506 0.00037506 -1.3426 -0.00083221 -0.7375 -0.00045715 619.8691427133106 86.675 0.82914 90.465 89.875 90.704 3.7905 -0.0078652 -0.00016974 NaN 3.2813 182 113 2 NaN NaN NaN NaN 0 NaN NaN 0 363490 + 12683 23832 8022 8028 0.11614974819917734 HRSKNDMRS 9 Unmodified _HRSKNDMRS_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|26|3|sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|26|3|sense MSMS UPN47_class_I_Rep_3 4 565.7782592773438 2 565.777813 1129.54107 NaN NaN NaN NaN NaN NaN NaN 23.916 1 27.267 26.767 27.767 3.3509 0 0 0 0.3967 1 3123 3123 1.4819 0 1 + 12684 26962 8023 8029 15654 15654 -0.018515366022711532 HRSRKGRRG 9 Unmodified _HRSRKGRRG_ 0 0 0 REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.3291015625 2 555.329196 1108.64384 NaN NaN NaN NaN NaN NaN NaN 100.89 1 104.68 104.18 105.18 3.7942 0 0 0 0.39518 1 24916 24916 1.8442 0 1 + 12685 32648 8024 8030 15655 15655 0.09386336971351739 HRTHYFVA 8 Unmodified _HRTHYFVA_ 0 0 0 REV__Charlie1a_dup1373|chr3:196776048-196777195:+|1.113764223669975|0.0378558596447943|4.88|151.0|24|2|sense REV__Charlie1a_dup1373|chr3:196776048-196777195:+|1.113764223669975|0.0378558596447943|4.88|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 515.7788696289062 2 515.764501 1029.51445 NaN NaN NaN NaN NaN NaN NaN 36.725 1 40.232 39.732 40.732 3.507 0 0 0 0.40738 1 6162 6162 0.79363 0 1 + 12686 17299 8025 8031 15656 15656 0.0008714256869097881 HRTKRGLIQFK 11 Unmodified _HRTKRGLIQFK_ 0 0 0 REV__nc|ENSG00000087269|P78316-2|NOP14 REV__nc|ENSG00000087269|P78316-2|NOP14 MSMS UPN48_class_I_Rep_1 5 461.94879150390625 3 461.949239 1382.82589 NaN NaN NaN NaN NaN NaN NaN 102.59 1 106.21 105.71 106.71 3.6164 0 0 0 0.38417 1 24732 24732 2.6312 0 1 + 12687 17976 8026 8032 15657 15657 0.14978631873577797 HRTKTHIQL 9 Unmodified _HRTKTHIQL_ 0 0 0 ENST00000412446.5_1_9:98575947-98576046:-|nuORF ENST00000412446.5_1_9:98575947-98576046:-|nuORF ENST00000412446.5_1_9:98575947-98576046:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 567.3303833007812 2 567.330539 1132.64652 0.41476 0.0002353 0.15714 8.9152E-05 0.5719 0.00032446 567.3306224288866 81.146 0.18236 84.633 84.502 84.684 3.4874 23 15 3 0 0 0 0.49026 1 20227 20227 1.6526 0.17072 1 64803 12688 6635 8027 8033 15658 15658 0.0855074758567298 HRTKTHIQL 9 Unmodified _HRTKTHIQL_ 0 0 0 ENST00000412446.5_1_9:98575947-98576046:-|nuORF ENST00000412446.5_1_9:98575947-98576046:-|nuORF ENST00000412446.5_1_9:98575947-98576046:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 567.330539 1132.64652 0.41476 0.0002353 0.15714 8.9152E-05 0.5719 0.00032446 567.3306224288866 81.146 0.18236 84.633 84.502 84.684 3.4874 0.051703 0.00068802 NaN 1.6526 23 15 3 NaN NaN NaN NaN 0 NaN NaN 0 64803 12689 6635 8027 8033 0.0855074758567298 HRTLETQL 8 Unmodified _HRTLETQL_ 0 0 0 REV__ENSG00000187187|ENST00000347077|ZNF546 REV__ENSG00000187187|ENST00000347077|ZNF546 MSMS UPN47_class_I_Rep_2 3 499.2751159667969 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 50.701 1 54.039 53.539 54.539 3.3386 0 0 0 0.40625 1 11167 11167 2.3027 0 1 + 12690 20923 8028 8034 15659 15659 0.03683688157718734 HRTLTSSCNF 10 Unmodified _HRTLTSSCNF_ 0 0 0 REV__ENSG00000182111|ENST00000420713|ZNF716 REV__ENSG00000182111|ENST00000420713|ZNF716 MULTI-MSMS UPN48_class_I_Rep_3 7 583.2755737304688 2 583.274572 1164.53459 0.49818 0.00029058 -0.84695 -0.000494 -0.34877 -0.00020343 583.2739498120442 61.458 0.86446 64.97 64.636 65.501 3.5128 143 73 3 0 0 0 0.56118 1 13686 13686 2.9952 0 1 398430 + 12691 20747 8029 8035 15660 15660 -0.0410947455366113 HRTPEIHAH 9 Unmodified _HRTPEIHAH_ 0 0 0 MLT1B_dup4511|chr4:73243892-73244298:-|1.448845031876295|0.0863997921206017|4.07|151.0|4|1|sense MLT1B_dup4511|chr4:73243892-73244298:-|1.448845031876295|0.0863997921206017|4.07|151.0|4|1|sense MLT1B_dup4511|chr4:73243892-73244298:-|1.448845031876295|0.0863997921206017|4.07|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 549.28515625 2 549.283589 1096.55262 NaN NaN NaN NaN NaN NaN NaN 38.913 1 42.643 42.143 43.143 3.7297 0 0 0 0.38299 1 6841 6841 4.756 0.81161 1 12692 16282 8030 8036 15661 15661 0.008210284833921833 HRTQFSTI 8 Unmodified _HRTQFSTI_ 0 0 0 REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|11|1|sense REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 495.2611999511719 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.63 1 104.24 103.74 104.74 3.6084 0 0 0 0.40604 1 24305 24305 2.5775 0 1 + 12693 17272 8031 8037 15662 15662 0.014314189862375315 HRTTALFQW 9 Unmodified _HRTTALFQW_ 0 0 0 L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|69|3|sense L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|69|3|sense L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|69|3|sense MSMS UPN46_class_I_Rep_3 1 580.3056640625 2 580.30399 1158.59343 NaN NaN NaN NaN NaN NaN NaN 40.449 1 40.449 39.949 40.949 0 0 0 0 0.3967 1 7850 7850 1.4819 0 1 12694 13472 8032 8038 15663 15663 0.020473698029945808 HRVFVLYW 8 Unmodified _HRVFVLYW_ 0 0 0 REV__L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|20|1|sense REV__L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|20|1|sense MSMS UPN47_class_I_Rep_1 2 560.3067016601562 2 560.308544 1118.60253 NaN NaN NaN NaN NaN NaN NaN 92.709 1 96.43 95.93 96.93 3.7209 0 0 0 0.40746 1 23091 23091 0.69038 0.16561 1 + 12695 26619 8033 8039 15664 15664 0.04797763159331225 HRVSSPISSQ 10 Unmodified _HRVSSPISSQ_ 0 0 0 ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MSMS UPN47_class_I_Rep_1 2 549.3013916015625 2 549.288537 1096.56252 NaN NaN NaN NaN NaN NaN NaN 100.53 1 104.32 103.82 104.82 3.7942 0 0 0 0.53105 1 24849 24849 5.7319 1.4026 1 12696 3203 8034 8040 15665 15665 0.018101716980936544 HRVSSPISSQ 10 Unmodified _HRVSSPISSQ_ 0 0 0 ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MSMS UPN47_class_I_Rep_1 2 549.3008422851562 2 549.288537 1096.56252 NaN NaN NaN NaN NaN NaN NaN 100.71 1 104.5 104 105 3.7942 0 0 0 0.53105 1 24883 24883 5.7319 1.4026 1 12697 3203 8034 8040 15666 15666 0.018101716980936544 HRWKHFHI 8 Unmodified _HRWKHFHI_ 0 0 0 REV__L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|22|2|anti-sense REV__L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|22|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8142700195312 2 580.814859 1159.61517 0.42676 0.00024787 -1.0528 -0.00061149 -0.62605 -0.00036362 580.8140689367835 49.663 0.86378 53.358 52.902 53.766 3.6946 90 56 2 0 0 0 0.82752 1 9932 9932 2.3027 0 1 378250 + 12698 28294 8035 8041 15667 15667 0.04174219342212382 HRWKLWFKKL 10 Unmodified _HRWKLWFKKL_ 0 0 0 REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|46|3|sense REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|46|3|sense MSMS UPN47_class_I_Rep_2 3 481.2894287109375 3 481.290825 1440.85064 NaN NaN NaN NaN NaN NaN NaN 15.906 1 19.293 18.793 19.793 3.3864 0 0 0 0.53105 1 929 929 0.15932 0.064481 1 + 12699 28573 8036 8042 15668 15668 0.14785311746936713 HRWTAWAGL 9 Unmodified _HRWTAWAGL_ 0 0 0 REV__nc|ENSG00000103502|O14735-2|CDIPT REV__nc|ENSG00000103502|O14735-2|CDIPT MULTI-MSMS UPN48_class_I_Rep_1 5 549.2874755859375 2 549.2856 1096.55665 0.49724 0.00027313 0.28329 0.0001556 0.78053 0.00042873 549.28573901992 38.927 0.684 42.432 42.205 42.889 3.5048 75 60 2 0 0 0 0.45688 1 6886 6886 4.756 0.42677 1 143270 + 12700 23043 8037 8043 15669 15669 0.012231179770651579 HRWTKVVAK 9 Unmodified _HRWTKVVAK_ 0 0 0 REV__ENSG00000135960|ENST00000258443|EDAR REV__ENSG00000135960|ENST00000258443|EDAR MSMS UPN46_class_I_Rep_3 1 562.8362426757812 2 562.838 1123.66145 NaN NaN NaN NaN NaN NaN NaN 83.823 1 83.823 83.323 84.323 0 0 0 0 0.4007 1 19923 19923 0.52476 0 1 + 12701 19164 8038 8044 15670 15670 0.10456239453628768 HRYDWNRRYD 10 Unmodified _HRYDWNRRYD_ 0 0 0 REV__AluSp_dup34241|chr12:118363840-118364163:+|1.3166689423422415|0.0099804371655422|7.04|151.0|18|2|anti-sense REV__AluSp_dup34241|chr12:118363840-118364163:+|1.3166689423422415|0.0099804371655422|7.04|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_2 6 494.2341613769531 3 494.232474 1479.67559 NaN NaN NaN NaN NaN NaN NaN 12.651 1 16.306 15.806 16.806 3.6552 0 0 0 0.53105 1 116 116 0.15932 0.064481 1 + 12702 17110 8039 8045 15671 15671 -0.045057598560333645 HRYGWKIKPT 10 Unmodified _HRYGWKIKPT_ 0 0 0 REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 643.362548828125 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 68.136 1 71.588 71.088 72.088 3.4517 0 0 0 0.53105 1 15714 15714 1.4819 0 1 + 12703 31873 8040 8046 15672 15672 0.07815893653810235 HRYGWKIKPT 10 Unmodified _HRYGWKIKPT_ 0 0 0 REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_2 6 643.3638305664062 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 66.165 1 69.652 69.152 70.152 3.4866 0 0 0 0.53105 1 15096 15096 1.4819 0 1 + 12704 31873 8040 8046 15673 15673 0.07815893653810235 HRYGWKIKPT 10 Unmodified _HRYGWKIKPT_ 0 0 0 REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_2 6 643.3636474609375 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 68.005 1 71.513 71.013 72.013 3.5083 0 0 0 0.53105 1 15656 15656 1.4819 0 1 + 12705 31873 8040 8046 15674 15674 0.07815893653810235 HRYGWKIKPT 10 Unmodified _HRYGWKIKPT_ 0 0 0 REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense REV__MSTA-int_dup25|chr1:50746602-50747700:+|1.3870749823770083|0.0234508605844194|5.89|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_3 7 643.027587890625 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 68.009 1 71.517 71.017 72.017 3.5077 0 0 0 0.53105 1 15568 15568 1.4819 0 1 + 12706 31873 8040 8046 15675 15675 0.07815893653810235 HRYKFQYS 8 Unmodified _HRYKFQYS_ 0 0 0 Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|36|2|anti-sense Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|36|2|anti-sense Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|36|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.7826538085938 2 564.78289 1127.55123 0.42883 0.00024219 0.014355 8.1073E-06 0.44318 0.0002503 564.7825974082455 91.838 0.20136 95.464 95.384 95.586 3.626 37 24 2 0 0 0 0.82752 1 22061 22061 0.79363 0 1 173740 12707 482 8041 8047 15676 15676 -0.007446056053822758 HRYNETDII 9 Unmodified _HRYNETDII_ 0 0 0 REV__L1MB2_dup7104|chr16:4398989-4399633:+|1.0042100852906188|0.0157408162673581|6.0|151.0|14|2|sense REV__L1MB2_dup7104|chr16:4398989-4399633:+|1.0042100852906188|0.0157408162673581|6.0|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 580.7902221679688 2 580.78837 1159.56219 NaN NaN NaN NaN NaN NaN NaN 29.991 1 33.736 33.236 34.236 3.7449 0 0 0 0.39598 1 4841 4841 1.6526 0.17072 1 + 12708 25763 8042 8048 15677 15677 -0.011212480217636767 HRYTLTWH 8 Unmodified _HRYTLTWH_ 0 0 0 chr19:8529997-8530075|151|37.62|0.65|5.85|-|1|MYO1F,MYO1F|2 chr19:8529997-8530075|151|37.62|0.65|5.85|-|1|MYO1F,MYO1F|2 chr19:8529997-8530075|151|37.62|0.65|5.85|-|1|MYO1F,MYO1F|2 MULTI-MSMS UPN48_class_I_Rep_1 5 557.783935546875 2 557.283057 1112.55156 0.4861 0.0002709 -1.3114 -0.00073083 -0.82531 -0.00045993 557.2824042243473 42.614 0.59118 46.122 45.893 46.485 3.5079 70 45 2 0 0 0 0.82752 1 7850 7850 4.756 2.1785 1 126120 12709 597 8043 8049 15678 15678 -0.00021185885543673066 HSAAYGSRSNS 11 Unmodified _HSAAYGSRSNS_ 0 0 0 Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|46|3|sense Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|46|3|sense Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|46|3|sense MSMS UPN46_class_I_Rep_3 1 568.7595825195312 2 568.757601 1135.50065 NaN NaN NaN NaN NaN NaN NaN 117.74 1 117.74 117.24 118.24 0 0 0 0 0.38417 1 29196 29196 0.96228 0.16864 1 12710 33096 8044 8050 15679 15679 -0.06168179721043998 HSAPHLIYL 9 Unmodified _HSAPHLIYL_ 0 0 0 REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|48|2|anti-sense REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|48|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 525.7904052734375 2 525.790184 1049.56581 0.29261 0.00015385 -0.55545 -0.00029205 -0.26284 -0.0001382 525.7897352497058 46.602 1.2491 50.121 49.649 50.898 3.5192 139 79 2 0 0 0 0.18929 2 9221 9221;9299 21.747 2.4897 1 393210 + 12711 27039 8045 8051 15680;15681 15680 0.04301466542756316 HSAPHLIYL 9 Unmodified _HSAPHLIYL_ 0 0 0 REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|48|2|anti-sense REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|48|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 525.7901000976562 2 525.790184 1049.56581 0.30552 0.00016064 -0.61666 -0.00032424 -0.31115 -0.0001636 525.7896432757115 46.222 1.2224 49.973 49.57 50.792 3.7506 160 79 3 0 0 0 0.09884 4 9093 8925;9011;9093;9132 34.102 4.1474 1 504830 + 12712 27039 8045 8051 15682;15683;15684;15685 15684 0.04301466542756316 HSAPHLIYL 9 Unmodified _HSAPHLIYL_ 0 0 0 REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|48|2|anti-sense REV__L1MC4a_dup9912|chr20:48780453-48781407:+|1.1341829555523697|0.0110387581870994|6.68|151.0|48|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.7902221679688 2 525.790184 1049.56581 0.36864 0.00019383 -0.59325 -0.00031193 -0.22462 -0.0001181 525.7896529212602 46.404 1.1568 50.04 49.649 50.806 3.6366 150 74 3 0 0 0 0.13631 3 9121 8901;9078;9121 26.884 4.1474 1 528890 + 12713 27039 8045 8051 15686;15687;15688 15688 0.04301466542756316 HSAVLPVH 8 Unmodified _HSAVLPVH_ 0 0 0 ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000583071.1_1_17:73488566-73488914:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF MSMS UPN47_class_I_Rep_1 2 430.25604248046875 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 109.43 1 113.03 112.53 113.53 3.6046 0 0 0 0.40364 1 26994 26994 5.7604 3.1829 1 12714 4802 8046 8052 15689 15689 0.036289527914163955 HSAVLPVH 8 Unmodified _HSAVLPVH_ 0 0 0 ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000583071.1_1_17:73488566-73488914:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF MSMS UPN48_class_I_Rep_2 6 430.2559814453125 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 109.04 1 112.71 112.21 113.21 3.6715 0 0 0 0.40364 1 25936 25936 5.7604 0.52976 1 12715 4802 8046 8052 15690 15690 0.036289527914163955 HSAVLPVH 8 Unmodified _HSAVLPVH_ 0 0 0 ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000583071.1_1_17:73488566-73488914:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF MSMS UPN48_class_I_Rep_2 6 430.2559509277344 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 109.41 1 113.08 112.58 113.58 3.6715 0 0 0 0.40364 1 26043 26043 5.7604 2.8712 1 12716 4802 8046 8052 15691 15691 0.036289527914163955 HSCDNLYSY 9 Unmodified _HSCDNLYSY_ 0 0 0 REV__ENST00000466992.1_1_6:109871214-109940313:-|nuORF REV__ENST00000466992.1_1_6:109871214-109940313:-|nuORF MSMS UPN47_class_I_Rep_2 3 550.7489624023438 2 551.218931 1100.42331 NaN NaN NaN NaN NaN NaN NaN 74.386 1 77.69 77.19 78.19 3.3048 0 0 0 0.38639 1 18328 18328 3.9444 1.0552 1 + 12717 22478 8047 8053 15692 15692 -0.12288533981609362 HSCGPSFQGWS 11 Unmodified _HSCGPSFQGWS_ 0 0 0 REV__THE1D_dup4700|chr5:169855824-169856197:-|1.0795442215529212|0.0150893517182543|6.16|151.0|12|3|sense REV__THE1D_dup4700|chr5:169855824-169856197:-|1.0795442215529212|0.0150893517182543|6.16|151.0|12|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 596.7442626953125 2 596.745647 1191.47674 0.39154 0.00023365 0.36021 0.00021495 0.75175 0.0004486 596.7457844874281 73.606 0.80602 76.992 76.52 77.326 3.3861 222 72 4 0 0 0 0.67519 1 17973 17973 0.96228 0.36078 1 585650 + 12718 32300 8048 8054 15693 15693 -0.11133736479064282 HSDLVHISI 9 Unmodified _HSDLVHISI_ 0 0 0 Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|64|3|anti-sense Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|64|3|anti-sense Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.77679443359375 2 510.777274 1019.53999 -0.17492 -8.9346E-05 -0.38603 -0.00019718 -0.56095 -0.00028652 510.77699469851467 38.806 0.52281 42.471 42.208 42.731 3.6652 64 33 3 0 0 0 0.42249 1 7473 7473 6.7232 0 1 99077 12719 33212 8049 8055 15694 15694 0.031005723004682295 HSDLVHISI 9 Unmodified _HSDLVHISI_ 0 0 0 Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|64|3|anti-sense Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|64|3|anti-sense Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7762145996094 2 510.777274 1019.53999 -0.26778 -0.00013678 -0.15927 -8.1352E-05 -0.42705 -0.00021813 510.7768657748537 39.054 0.48327 42.433 42.253 42.736 3.3785 45 25 2 0 0 0 0.35081 1 7649 7649 10.824 0 1 80101 12720 33212 8049 8055 15695 15695 0.031005723004682295 HSDPESDFY 9 Unmodified _HSDPESDFY_ 0 0 0 ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L MULTI-MSMS UPN47_class_I_Rep_1 2 548.7145385742188 2 548.714536 1095.41452 -0.0030844 -1.6925E-06 0.099979 5.486E-05 0.096894 5.3167E-05 548.7144801297173 36.122 0.66764 39.799 39.569 40.237 3.6762 69 47 2 0 0 0 0.13631 3 6685 6685;6747;6771 26.884 9.9414 1 120550 12721 2294 8050 8056 15696;15697;15698 15696 -0.12937184346424146 HSDPESDFY 9 Unmodified _HSDPESDFY_ 0 0 0 ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L MULTI-MSMS UPN47_class_I_Rep_2 3 548.7141723632812 2 548.714536 1095.41452 0.026123 1.4334E-05 -0.056628 -3.1073E-05 -0.030505 -1.6738E-05 548.7143378465933 36.383 0.73713 39.795 39.539 40.276 3.4114 83 53 2 0 0 0 0.26948 3 6784 6784;6822;6871 15.847 6.4997 1 108380 12722 2294 8050 8056 15699;15700;15701 15699 -0.12937184346424146 HSDPESDFY 9 Unmodified _HSDPESDFY_ 0 0 0 ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L ENSG00000119760|ENST00000337768|SUPT7L MULTI-MSMS UPN47_class_I_Rep_3 4 548.7147216796875 2 548.714536 1095.41452 -0.095721 -5.2523E-05 0.087177 4.7835E-05 -0.0085442 -4.6883E-06 548.7145918771885 36.553 0.58667 39.8 39.48 40.067 3.247 61 36 2 0 0 0 0.18929 3 6921 6871;6921;6974 21.747 10.106 1 94325 12723 2294 8050 8056 15702;15703;15704 15703 -0.12937184346424146 HSDPSILGY 9 Unmodified _HSDPSILGY_ 0 0 0 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 MULTI-MSMS UPN47_class_I_Rep_2 3 494.7405090332031 2 494.740357 987.46616 0.089217 4.4139E-05 0.11841 5.8582E-05 0.20763 0.00010272 494.7403139890884 46.328 0.73888 49.68 49.313 50.052 3.3515 95 50 2 0 0 0 0.25207 3 9769 9769;9811;9853 16.942 3.0362 1 164620 12724 3447 8051 8057 15705;15706;15707 15705 -0.028073958618506367 HSELFHCEPF 10 Unmodified _HSELFHCEPF_ 0 0 0 REV__L1MC2_dup4609|chr12:101808956-101809996:+|3.374986174448414|0.054390239808204|5.96|151.0|43|1|anti-sense REV__L1MC2_dup4609|chr12:101808956-101809996:+|3.374986174448414|0.054390239808204|5.96|151.0|43|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 623.7735595703125 2 623.271498 1244.52844 0.43005 0.00026804 -0.047848 -2.9822E-05 0.3822 0.00023822 623.2714411488403 45.133 0.8583 48.65 48.31 49.168 3.5162 140 61 3 0 0 0 0.51565 1 8630 8630 10.074 0 1 413310 + 12725 26673 8052 8058 15708 15708 -0.08403992785179071 HSELLEDYY 9 Unmodified _HSELLEDYY_ 0 0 0 ENSG00000117528|ENST00000370214|ABCD3 ENSG00000117528|ENST00000370214|ABCD3 ENSG00000117528|ENST00000370214|ABCD3 MSMS UPN47_class_I_Rep_1 2 584.7612915039062 2 584.761486 1167.50842 NaN NaN NaN NaN NaN NaN NaN 51.612 1 55.205 54.705 55.705 3.5932 0 0 0 0.29868 1 11420 11420 10.824 2.6684 1 12726 2223 8053 8059 15709 15709 -0.06863465244146028 HSELLEDYY 9 Unmodified _HSELLEDYY_ 0 0 0 ENSG00000117528|ENST00000370214|ABCD3 ENSG00000117528|ENST00000370214|ABCD3 ENSG00000117528|ENST00000370214|ABCD3 MULTI-MSMS UPN47_class_I_Rep_2 3 584.7606201171875 2 584.761486 1167.50842 0.51572 0.00030157 -0.59471 -0.00034776 -0.078987 -4.6188E-05 584.7611503090782 51.994 0.37603 55.327 55.092 55.468 3.3332 30 18 2 0 0 0 0.26948 3 11519 11519;11557;11565 15.847 2.6684 1 58716 12727 2223 8053 8059 15710;15711;15712 15710 -0.06863465244146028 HSELLEDYY 9 Unmodified _HSELLEDYY_ 0 0 0 ENSG00000117528|ENST00000370214|ABCD3 ENSG00000117528|ENST00000370214|ABCD3 ENSG00000117528|ENST00000370214|ABCD3 MULTI-MSMS UPN47_class_I_Rep_3 4 585.2631225585938 2 584.761486 1167.50842 0.52174 0.0003051 -0.14149 -8.2737E-05 0.38025 0.00022236 585.2630849989175 52.175 0.1733 55.381 55.29 55.463 3.2055 21 11 2 0 0 0 0.35081 1 11686 11686 10.824 1.4765 1 48922 12728 2223 8053 8059 15713 15713 -0.06863465244146028 HSETKFYIF 9 Unmodified _HSETKFYIF_ 0 0 0 REV__AluSx_dup105535|chr19:14403010-14403339:-|2.6480461812977167|0.1298772281829072|4.35|151.0|13|1|anti-sense REV__AluSx_dup105535|chr19:14403010-14403339:-|2.6480461812977167|0.1298772281829072|4.35|151.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.292724609375 2 586.292756 1170.57096 0.51709 0.00030316 -0.010788 -6.325E-06 0.5063 0.00029684 586.2925636292705 62.839 0.89818 66.348 65.972 66.87 3.5091 141 64 3 0 0 0 0.30034 1 13965 13965 13.906 0 1 356540 + 12729 17131 8054 8060 15714 15714 -0.007502743853137872 HSEYHTLLY 9 Unmodified _HSEYHTLLY_ 0 0 0 ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 MULTI-MSMS UPN47_class_I_Rep_1 2 581.7799682617188 2 581.780013 1161.54547 -0.038669 -2.2497E-05 0.18105 0.00010533 0.14238 8.2833E-05 581.7800548489878 38.555 2.2626 42.22 41.78 44.043 3.6652 361 161 4 0 0 0 0.0059326 11 7489 7365;7409;7449;7489;7532;7574;7613;7656;7697;7740;7791 128.37 84.507 1 896330 12730 1881 8055 8061 15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725 15718 -0.028837489076977363 HSEYHTLLY 9 Unmodified _HSEYHTLLY_ 0 0 0 ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 MULTI-MSMS UPN47_class_I_Rep_2 3 581.7799682617188 2 581.780013 1161.54547 0.045194 2.6293E-05 0.17308 0.0001007 0.21827 0.00012699 581.7800540568915 38.922 2.2633 42.301 41.894 44.157 3.3785 333 147 3 0 0 0 0.0052487 10 7643 7488;7524;7565;7604;7643;7685;7730;7778;7822;7959 92.491 52.534 1 703400 12731 1881 8055 8061 15726;15727;15728;15729;15730;15731;15732;15733;15734;15735 15730 -0.028837489076977363 HSEYHTLLY 9 Unmodified _HSEYHTLLY_ 0 0 0 ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 MULTI-MSMS UPN47_class_I_Rep_3 4 581.7799682617188 2 581.780013 1161.54547 -0.042504 -2.4728E-05 0.2726 0.00015859 0.2301 0.00013387 581.7800800259877 39.071 2.2732 42.309 41.864 44.137 3.2379 351 154 4 0 0 0 0.006343 12 7686 7605;7647;7686;7734;7774;7813;7854;7892;7938;7986;8029;8202 85.272 49.145 1 595250 12732 1881 8055 8061 15736;15737;15738;15739;15740;15741;15742;15743;15744;15745;15746;15747 15738 -0.028837489076977363 HSFIIAFQV 9 Unmodified _HSFIIAFQV_ 0 0 0 REV__L1MB2_dup2976|chr6:88615857-88616990:-|1.28440272704387|0.2634758674174105|2.29|151.0|77|2|anti-sense REV__L1MB2_dup2976|chr6:88615857-88616990:-|1.28440272704387|0.2634758674174105|2.29|151.0|77|2|anti-sense MSMS UPN46_class_I_Rep_3 1 531.2939453125 2 531.292559 1060.57057 NaN NaN NaN NaN NaN NaN NaN 34.968 1 34.968 34.468 35.468 0 0 0 0 0.39518 1 6309 6309 1.8442 0 1 + 12733 25718 8056 8062 15748 15748 0.042703506855104933 HSFTCGYP 8 Unmodified _HSFTCGYP_ 0 0 0 L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|166|3|anti-sense L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|166|3|anti-sense L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|166|3|anti-sense MSMS UPN46_class_I_Rep_3 1 456.1900939941406 2 456.189445 910.364338 NaN NaN NaN NaN NaN NaN NaN 63.456 1 63.456 62.956 63.956 0 0 0 0 0.40738 1 14249 14249 0.79363 0 1 12734 10017 8057 8063 15749 15749 -0.09442965485254717 HSFVWFFFF 9 Unmodified _HSFVWFFFF_ 0 0 0 REV__L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|29|1|anti-sense REV__L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 632.3036499023438 2 632.302927 1262.5913 NaN NaN NaN NaN NaN NaN NaN 57.113 1 60.628 60.128 61.128 3.5142 0 0 0 0.40038 1 12325 12325 0.6015 0 1 + 12735 28752 8058 8064 15750 15750 -0.02949058934814275 HSGVLNKL 8 Unmodified _HSGVLNKL_ 0 0 0 L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense;L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|23|2|sense L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 435.2452087402344 2 434.255977 866.497401 -0.77459 -0.00033637 0.2498 0.00010848 -0.52479 -0.00022789 434.25593701430853 14.887 0.40432 18.273 18.165 18.57 3.3864 77 44 3 0 0 0 0.82752 1 677 677 11.64 0.81637 1 95065 12736 8615 8059 8065 15751 15751 0.05881221962908967 HSGVLNKL 8 Unmodified _HSGVLNKL_ 0 0 0 L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense;L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|23|2|sense L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 434.255977 866.497401 -0.47879 -0.00020792 -0.20311 -8.8201E-05 -0.6819 -0.00029612 434.2557752172876 14.8 0.41885 18.275 18.168 18.587 3.475 -0.015577 -0.00027212 NaN 11.64 79 45 3 NaN NaN NaN NaN 0 NaN NaN 0 90384 12737 8615 8059 8065 0.05881221962908967 HSGVLNKL 8 Unmodified _HSGVLNKL_ 0 0 0 L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense;L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|23|2|sense L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|32|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 434.255977 866.497401 -1.274 -0.00055324 0.4255 0.00018478 -0.84848 -0.00036846 434.25607006452236 14.958 0.35721 18.324 18.193 18.551 3.3659 0.033121 0.00027384 NaN 11.64 71 43 3 NaN NaN NaN NaN 0 NaN NaN 0 93167 12738 8615 8059 8065 0.05881221962908967 HSHFLPLPI 9 Unmodified _HSHFLPLPI_ 0 0 0 ERVL-B4-int_dup1762|chr7:157377801-157378250:-|2.452289939225162|0.4744956208973594|2.37|149.0|24|1|anti-sense ERVL-B4-int_dup1762|chr7:157377801-157378250:-|2.452289939225162|0.4744956208973594|2.37|149.0|24|1|anti-sense ERVL-B4-int_dup1762|chr7:157377801-157378250:-|2.452289939225162|0.4744956208973594|2.37|149.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 530.7998657226562 2 530.800552 1059.58655 NaN NaN NaN NaN NaN NaN NaN 81.987 1 85.562 85.062 86.062 3.5753 0 0 0 0.28335 1 19567 19567 11.64 0 1 12739 7717 8060 8066 15752 15752 0.05914056922438249 HSHQYLTL 8 Unmodified _HSHQYLTL_ 0 0 0 L1M5_dup11211|chr3:136744339-136744604:-|1.02197801258105|0.0053659762893144|7.57|151.0|14|1|anti-sense L1M5_dup11211|chr3:136744339-136744604:-|1.02197801258105|0.0053659762893144|7.57|151.0|14|1|anti-sense L1M5_dup11211|chr3:136744339-136744604:-|1.02197801258105|0.0053659762893144|7.57|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_2 3 499.7933349609375 2 499.756341 997.498129 NaN NaN NaN NaN NaN NaN NaN 21.306 1 24.714 24.214 25.214 3.4074 0 0 0 0.40404 1 2361 2361 5.2307 0 1 12740 9089 8061 8067 15753 15753 -0.0007198338804528248 HSHRYKKW 8 Unmodified _HSHRYKKW_ 0 0 0 REV__L1MA7_dup671|chr2:44192672-44193360:-|1.5391494370226335|0.0082235625291549|7.55|151.0|21|3|sense REV__L1MA7_dup671|chr2:44192672-44193360:-|1.5391494370226335|0.0082235625291549|7.55|151.0|21|3|sense MSMS UPN48_class_I_Rep_3 7 571.3031005859375 2 571.304324 1140.5941 NaN NaN NaN NaN NaN NaN NaN 48.768 1 52.397 51.897 52.897 3.6291 0 0 0 0.40604 1 9719 9719 2.5775 0.51773 1 + 12741 25521 8062 8068 15754 15754 0.029422092427012103 HSHYSICTRT 10 Unmodified _HSHYSICTRT_ 0 0 0 ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP ENSG00000275395|ENST00000616721|FCGBP ENSG00000275395|ENST00000616721|FCGBP MSMS UPN47_class_I_Rep_3 4 603.2548828125 2 602.780022 1203.54549 NaN NaN NaN NaN NaN NaN NaN 48.742 1 51.977 51.477 52.477 3.2345 0 0 0 0.53105 1 10624 10624 3.9444 0.94915 1 12742 5825 8063 8069 15755 15755 -0.04814072179374307 HSKDLLHAVVF 11 Unmodified _HSKDLLHAVVF_ 0 0 0 REV__L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|149|1|anti-sense REV__L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|149|1|anti-sense MSMS UPN48_class_I_Rep_3 7 633.369140625 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 88.237 1 92.047 91.547 92.547 3.8104 0 0 0 0.38417 1 20944 20944 5.2969 0.39987 1 + 12743 25001 8064 8070 15756 15756 0.07104767697069292 HSKGFLFHY 9 Unmodified _HSKGFLFHY_ 0 0 0 ENST00000276461.9_2_8:37612723-37612837:+|nuORF ENST00000276461.9_2_8:37612723-37612837:+|nuORF ENST00000276461.9_2_8:37612723-37612837:+|nuORF MSMS UPN48_class_I_Rep_2 6 568.2862548828125 2 568.287808 1134.56106 NaN NaN NaN NaN NaN NaN NaN 51.537 1 55.205 54.705 55.705 3.6679 0 0 0 0.35339 1 10632 10632 7.9102 0.62092 1 12744 6025 8065 8071 15757 15757 -0.0008341760001258081 HSKKRVVF 8 Unmodified _HSKKRVVF_ 0 0 0 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 REV__nc|ENSG00000205754|G3V0H7|SLCO1B7 MSMS UPN48_class_I_Rep_2 6 500.8053283691406 2 500.806168 999.597784 NaN NaN NaN NaN NaN NaN NaN 57.645 1 61.159 60.659 61.659 3.5142 0 0 0 0.40581 1 12485 12485 2.8892 0 1 + 12745 31961 8066 8072 15758 15758 0.09796879016562343 HSKNKGKKIID 11 Unmodified _HSKNKGKKIID_ 0 0 0 L1M6_dup1753|chr5:81458785-81459484:-|1.024833063631432|0.051313053792699|4.32|151.0|29|3|sense L1M6_dup1753|chr5:81458785-81459484:-|1.024833063631432|0.051313053792699|4.32|151.0|29|3|sense L1M6_dup1753|chr5:81458785-81459484:-|1.024833063631432|0.051313053792699|4.32|151.0|29|3|sense MSMS UPN48_class_I_Rep_1 5 634.3790283203125 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 106.25 1 109.88 109.38 110.38 3.6277 0 0 0 0.38417 1 25605 25605 2.086 0.43339 1 12746 9214 8067 8073 15759 15759 0.11811841617145546 HSKPSSNIHY 10 Unmodified _HSKPSSNIHY_ 0 0 0 REV__MLT1D-int_dup112|chr2:171956550-171957669:+|2.012382514187621|0.1394906546956093|3.85|151.0|47|1|anti-sense REV__MLT1D-int_dup112|chr2:171956550-171957669:+|2.012382514187621|0.1394906546956093|3.85|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_1 5 585.288330078125 2 585.288537 1168.56252 NaN NaN NaN NaN NaN NaN NaN 60.685 1 64.159 63.659 64.659 3.4737 0 0 0 0.53105 1 13445 13445 1.4819 0 1 + 12747 31688 8068 8074 15760 15760 -0.015018283019117007 HSKTLSLR 8 Unmodified _HSKTLSLR_ 0 0 0 AluJr_dup62902|chr14:102612713-102612984:+|1.3173458351209548|0.0037993461916926|8.44|151.0|6|2|sense;AluJo_dup70352|chr19:10798944-10799250:+|1.1098947822011564|0.0207143055391306|5.74|151.0|6|2|sense AluJr_dup62902|chr14:102612713-102612984:+|1.3173458351209548|0.0037993461916926|8.44|151.0|6|2|sense AluJr_dup62902|chr14:102612713-102612984:+|1.3173458351209548|0.0037993461916926|8.44|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 471.6824035644531 2 471.279983 940.545414 NaN NaN NaN NaN NaN NaN NaN 61.603 1 61.603 61.103 62.103 0 0 0 0 0.40625 1 13721 13721 2.3027 0 1 12748 126 8069 8075 15761 15761 0.07276295882957129 HSLIKWKWY 9 Unmodified _HSLIKWKWY_ 0 0 0 HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|53|2|sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|53|2|sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|53|2|sense MSMS UPN47_class_I_Rep_3 4 630.84716796875 2 630.848033 1259.68151 NaN NaN NaN NaN NaN NaN NaN 13.018 1 16.392 15.892 16.892 3.3734 0 0 0 0.4007 1 208 208 0.52476 0 1 12749 8375 8070 8076 15762 15762 0.062059903936187766 HSLKCQKL 8 Unmodified _HSLKCQKL_ 0 0 0 VWA3A|p.H392Afs*2|1|0.05|ENSG00000175267|chr16:22121015-22121016|-/C|frameshift_variant;ENSG00000175267|ENST00000389398|VWA3A VWA3A|p.H392Afs*2|1|0.05|ENSG00000175267|chr16:22121015-22121016|-/C|frameshift_variant VWA3A|p.H392Afs*2|1|0.05|ENSG00000175267|chr16:22121015-22121016|-/C|frameshift_variant MSMS UPN47_class_I_Rep_2 3 478.7706298828125 2 478.770937 955.527321 NaN NaN NaN NaN NaN NaN NaN 35.55 1 38.962 38.462 39.462 3.4114 0 0 0 0.40472 1 6568 6568 4.3292 0 1 12750 4716 8071 8077 15763 15763 0.04777837636572713 HSLLEDMVY 9 Unmodified _HSLLEDMVY_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS UPN47_class_I_Rep_3 4 553.7625732421875 2 553.762975 1105.5114 NaN NaN NaN NaN NaN NaN NaN 37.96 1 41.201 40.701 41.701 3.2414 0 0 0 0.36505 1 7337 7337 7.2892 0 1 12751 5248 8072 8078 15764 15764 -0.03713913390970447 HSLNLGLR 8 Unmodified _HSLNLGLR_ 0 0 0 MamRep1527_dup161|chr2:68207455-68207874:+|1.909308713931348|0.0207498730033711|6.52|151.0|29|2|anti-sense MamRep1527_dup161|chr2:68207455-68207874:+|1.909308713931348|0.0207498730033711|6.52|151.0|29|2|anti-sense MamRep1527_dup161|chr2:68207455-68207874:+|1.909308713931348|0.0207498730033711|6.52|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_1 2 455.2666320800781 2 455.266876 908.519199 NaN NaN NaN NaN NaN NaN NaN 30.332 1 34.077 33.577 34.577 3.7449 0 0 0 0.40472 1 4945 4945 4.3292 0 1 12752 15745 8073 8079 15765 15765 0.06128026711473922 HSNIPFSR 8 Unmodified _HSNIPFSR_ 0 0 0 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS UPN46_class_I_Rep_3 1 479.2484130859375 2 479.248683 956.482814 0.048124 2.3064E-05 -0.29771 -0.00014268 -0.24958 -0.00011961 479.2485376901685 31.957 0.7471 31.957 31.672 32.419 0 94 55 2 0 0 0 0.82752 2 5444 5396;5444 11.495 0.83525 1 155150 12753 4239 8074 8080 15766;15767 15767 0.00283149814765693 HSNWNKWMR 9 Unmodified _HSNWNKWMR_ 0 0 0 REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|36|1|sense REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|36|1|sense MSMS UPN48_class_I_Rep_1 5 629.80078125 2 629.798549 1257.58254 NaN NaN NaN NaN NaN NaN NaN 112.94 1 116.57 116.07 117.07 3.6314 0 0 0 0.39518 1 27423 27423 1.8442 0.19162 1 + 12754 26319 8075 8081 15768 15768 -0.03594355842960795 HSPQALLAL 9 Unmodified _HSPQALLAL_ 0 0 0 REV__ENSG00000132382|ENST00000254718|MYBBP1A REV__ENSG00000132382|ENST00000254718|MYBBP1A MSMS UPN46_class_I_Rep_3 1 475.27880859375 2 475.276909 948.539266 NaN NaN NaN NaN NaN NaN NaN 37.569 1 37.569 37.069 38.069 0 0 0 0 0.39326 1 7076 7076 2.3027 0 1 + 12755 19013 8076 8082 15769 15769 0.06293777651421806 HSPSLVVDY 9 Unmodified _HSPSLVVDY_ 0 0 0 REV__ENSG00000128052|ENST00000263923|KDR REV__ENSG00000128052|ENST00000263923|KDR MULTI-SECPEP UPN48_class_I_Rep_1 5 508.2119445800781 2 508.756007 1015.49746 0.28461 0.0001448 -0.18549 -9.4367E-05 0.099128 5.0432E-05 508.7558967781436 31.76 0.26332 35.294 35.257 35.52 3.5342 37 24 2 0 0 0 0.12462 1 4753 4753 1.8442 0.36234 1 93301 + 12756 18892 8077 8083 15770 15770 -0.009668228277632807 HSQVYPAR 8 Unmodified _HSQVYPAR_ 0 0 0 L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2476806640625 2 479.248683 956.482814 0.048124 2.3064E-05 -0.29771 -0.00014268 -0.24958 -0.00011961 479.2485376901685 31.957 0.7471 31.957 31.672 32.419 0 94 55 2 0 0 0 0.82752 2 5356 5356;5490 10.074 1.3285 1 155150 12757 10944 8078 8084 15771;15772 15771 0.0028314981475432432 HSRKRERRVP 10 Unmodified _HSRKRERRVP_ 0 0 0 REV__nc|ENSG00000133226|Q8IYB3-2|SRRM1 REV__nc|ENSG00000133226|Q8IYB3-2|SRRM1 MULTI-SECPEP UPN48_class_I_Rep_3 7 441.29736328125 3 440.928837 1319.76468 0.042624 1.8794E-05 0.0084679 3.7337E-06 0.051092 2.2528E-05 440.92895830019535 28.14 0.28566 31.883 31.711 31.996 3.7424 47 31 2 0 0 0 0.84575 1 3756 3756 0.69767 0.24315 1 85282 + 12758 19054 8079 8085 15773 15773 0.11759119894145442 HSRYSEMRRS 10 Unmodified _HSRYSEMRRS_ 0 0 0 REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.8789978027344 3 436.879044 1307.6153 -0.048494 -2.1186E-05 2.3008 0.0010052 2.2523 0.00098399 437.2149797392198 95.47 0.25324 99.087 98.995 99.248 3.6167 43 31 2 0 0 0 0.56454 1 22978 22978 0.62683 0.17231 1 62248 + 12759 23441 8080 8086 15774 15774 -0.026201935107565077 HSRYSEMRRS 10 Unmodified _HSRYSEMRRS_ 0 0 0 REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 436.879044 1307.6153 0.1511 6.6012E-05 1.0158 0.00044377 1.1669 0.00050978 436.8791897086017 98.998 0.082428 98.998 98.953 99.035 0 -0.0079036 -0.00083476 NaN 0.62683 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 55210 + 12760 23441 8080 8086 -0.026201935107565077 HSRYSEMRRS 10 Unmodified _HSRYSEMRRS_ 0 0 0 REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.879044 1307.6153 0.10869 4.7483E-05 1.5604 0.00068169 1.6691 0.00072917 436.8790513945059 95.188 0.12005 98.969 98.924 99.044 3.7804 -0.03705 -0.00012098 NaN 0.62683 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 44879 + 12761 23441 8080 8086 -0.026201935107565077 HSRYSEMRRS 10 Unmodified _HSRYSEMRRS_ 0 0 0 REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense REV__HAL1_dup8488|chr6:25089671-25089862:+|1.5238882344745477|0.2692800543874906|2.5|151.0|8|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.879044 1307.6153 0.14193 6.2008E-05 1.7308 0.00075615 1.8727 0.00081816 436.8791712071591 95.068 0.12246 98.97 98.893 99.016 3.9016 -0.036056 0.00010239 NaN 0.62683 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 83548 + 12762 23441 8080 8086 -0.026201935107565077 HSSGPVETSF 10 Unmodified _HSSGPVETSF_ 0 0 0 REV__L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|21|2|sense REV__L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.240234375 2 524.240721 1046.46689 -0.33889 -0.00017766 -0.062599 -3.2817E-05 -0.40149 -0.00021048 524.2406294151735 38.232 0.73084 41.62 41.28 42.011 3.3879 105 59 2 0 0 0 0.30832 3 7307 7307;7346;7385 30.637 1.555 1 229310 + 12763 29678 8081 8087 15775;15776;15777 15775 -0.054486012128108996 HSSGPVETSF 10 Unmodified _HSSGPVETSF_ 0 0 0 REV__L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|21|2|sense REV__L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.2407836914062 2 524.240721 1046.46689 -0.16285 -8.5374E-05 -0.23845 -0.000125 -0.4013 -0.00021038 524.2405378427912 38.264 0.68149 41.506 41.245 41.927 3.2414 93 50 2 0 0 0 0.30832 1 7463 7463 30.637 1.555 1 196470 + 12764 29678 8081 8087 15778 15778 -0.054486012128108996 HSSPFCHH 8 Unmodified _HSSPFCHH_ 0 0 0 REV__ENST00000448373.6_1_19:37068233-37068374:+|nuORF REV__ENST00000448373.6_1_19:37068233-37068374:+|nuORF MSMS UPN47_class_I_Rep_3 4 476.2690124511719 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 44.084 1 47.328 46.828 47.828 3.2441 0 0 0 0.40738 1 9211 9211 0.79363 0.10326 1 + 12765 22374 8082 8088 15779 15779 -0.09545625159603333 HSSPLPLPTL 10 Unmodified _HSSPLPLPTL_ 0 0 0 REV__L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|127|3|anti-sense REV__L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|127|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 531.3026123046875 2 531.303124 1060.5917 0.46425 0.00024666 -0.39416 -0.00020942 0.070091 3.7239E-05 531.3028001572092 64.159 0.81971 67.634 67.183 68.002 3.4743 104 62 2 0 0 0 0.31342 1 14382 14382 29.082 1.4528 1 533310 + 12766 28856 8083 8089 15780 15780 0.06382315994369492 HSSTCGVVPHC 11 Unmodified _HSSTCGVVPHC_ 0 0 0 L1ME2_dup12265|chr20:41059613-41060602:+|1.1758182751148396|0.0402985840404176|4.87|151.0|71|3|anti-sense L1ME2_dup12265|chr20:41059613-41060602:+|1.1758182751148396|0.0402985840404176|4.87|151.0|71|3|anti-sense L1ME2_dup12265|chr20:41059613-41060602:+|1.1758182751148396|0.0402985840404176|4.87|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_1 2 563.7543334960938 2 563.742051 1125.46955 NaN NaN NaN NaN NaN NaN NaN 27.275 1 31.041 30.541 31.541 3.7662 0 0 0 0.38417 1 4032 4032 1.1933 0.39971 1 12767 12471 8084 8090 15781 15781 -0.08816792351126423 HSSTLIGVNIP 11 Unmodified _HSSTLIGVNIP_ 0 0 0 REV__Tigger1_dup1245|chr2:69600353-69601200:+|1.7776333655950487|0.0352321297464589|5.66|151.0|38|1|anti-sense REV__Tigger1_dup1245|chr2:69600353-69601200:+|1.7776333655950487|0.0352321297464589|5.66|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_1 2 569.7593994140625 2 569.316763 1136.61897 NaN NaN NaN NaN NaN NaN NaN 67.71 1 71.071 70.571 71.571 3.3611 0 0 0 0.38417 1 16299 16299 2.7352 0.67545 1 + 12768 32376 8085 8091 15782 15782 0.056127995347424076 HSSWNLPPGPF 11 Unmodified _HSSWNLPPGPF_ 0 0 0 ENSG00000130649|ENST00000252945|CYP2E1 ENSG00000130649|ENST00000252945|CYP2E1 ENSG00000130649|ENST00000252945|CYP2E1 MSMS UPN48_class_I_Rep_1 5 619.8002319335938 2 619.80128 1237.58801 NaN NaN NaN NaN NaN NaN NaN 64.832 1 68.286 67.786 68.786 3.4541 0 0 0 0.38417 1 14707 14707 3.5965 1.098 1 12769 2664 8086 8092 15783 15783 -0.021283537794715812 HSTDPPSWAD 10 Unmodified _HSTDPPSWAD_ 0 0 0 L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|84|2|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|84|2|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|84|2|sense MSMS UPN48_class_I_Rep_2 6 556.7364501953125 2 556.735803 1111.45705 NaN NaN NaN NaN NaN NaN NaN 28.906 1 32.537 32.037 33.037 3.6316 0 0 0 0.53105 1 4036 4036 3.5965 0 1 12770 13841 8087 8093 15784 15784 -0.0942178921818595 HSTHNAFMKE 10 Unmodified _HSTHNAFMKE_ 0 0 0 REV__L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|12|1|sense REV__L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|12|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 600.7725830078125 2 601.274572 1200.53459 0.51683 0.00031075 -0.72618 -0.00043663 -0.20935 -0.00012588 601.7757980488416 53.887 0.064865 57.205 57.144 57.209 3.3187 5 3 2 0 0 0 0.84575 1 12135 12135 5.7319 0 1 38327 + 12771 26346 8088 8094 15785 15785 -0.057654745536638075 HSTLVKRTLNK 11 Unmodified _HSTLVKRTLNK_ 0 0 0 REV__ERVL-E-int_dup1639|chr3:47954217-47955435:+|1.1010899232093654|0.010006662425357|6.78|149.0|32|3|sense REV__ERVL-E-int_dup1639|chr3:47954217-47955435:+|1.1010899232093654|0.010006662425357|6.78|149.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 648.8938598632812 2 648.890961 1295.76737 NaN NaN NaN NaN NaN NaN NaN 100.61 1 104.35 103.85 104.85 3.7417 0 0 0 0.38417 1 23891 23891 2.7352 0.23671 1 + 12772 23270 8089 8095 15786 15786 0.13131530508462674 HSTPLMFQF 9 Unmodified _HSTPLMFQF_ 0 0 0 REV__nc|ENSG00000278540|Q13085-3|ACACA REV__nc|ENSG00000278540|Q13085-3|ACACA MSMS UPN47_class_I_Rep_1 2 554.28759765625 2 554.268227 1106.5219 NaN NaN NaN NaN NaN NaN NaN 51.791 1 55.385 54.885 55.885 3.5932 0 0 0 0.35339 1 11475 11475 7.9102 0 1 + 12773 21444 8090 8096 15787 15787 -0.027098859458874358 HSVIHHKLVHI 11 Unmodified _HSVIHHKLVHI_ 0 0 0 REV__L1MA6_dup4857|chr16:47353218-47355674:+|1.3173458351209548|0.0194695259066352|6.08|151.0|89|3|sense REV__L1MA6_dup4857|chr16:47353218-47355674:+|1.3173458351209548|0.0194695259066352|6.08|151.0|89|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 440.7994384765625 3 440.594684 1318.76222 0.037121 1.6355E-05 0.12689 5.5908E-05 0.16401 7.2264E-05 440.59463276456614 30.664 0.17022 34.206 34.129 34.299 3.542 26 16 2 0 0 0 22.551 1 4436 4436 0.40827 0 1 94617 + 12774 25473 8091 8097 15788 15788 0.1155927143649933 HSVLLMPL 8 Unmodified _HSVLLMPL_ 0 0 0 REV__L1MB2_dup616|chr2:63176576-63178890:-|1.9026767694876967|0.0913291454891443|4.38|151.0|104|2|anti-sense REV__L1MB2_dup616|chr2:63176576-63178890:-|1.9026767694876967|0.0913291454891443|4.38|151.0|104|2|anti-sense MSMS UPN47_class_I_Rep_2 3 455.26666259765625 2 455.264956 908.515359 NaN NaN NaN NaN NaN NaN NaN 30.561 1 34.043 33.543 34.543 3.4821 0 0 0 0.40364 1 5054 5054 5.7604 0 1 + 12775 25760 8092 8098 15789 15789 0.05744220893404872 HSVMECWEF 9 Unmodified _HSVMECWEF_ 0 0 0 REV__L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|76|3|anti-sense REV__L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_1 5 584.23388671875 2 584.233527 1166.4525 NaN NaN NaN NaN NaN NaN NaN 113.16 1 116.79 116.29 117.29 3.6314 0 0 0 0.39428 1 27483 27483 2.0598 0 1 + 12776 29030 8093 8099 15790 15790 -0.12406712956953925 HSVNMIKK 8 Unmodified _HSVNMIKK_ 0 0 0 HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|81|3|sense HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|81|3|sense HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|81|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.770751953125 2 478.770937 955.527321 -0.4727 -0.00022631 0.28653 0.00013718 -0.18616 -8.913E-05 478.77090814980164 35.712 0.62019 38.966 38.619 39.24 3.2547 59 41 2 0 0 0 0.82752 1 6667 6667 4.3292 0 1 69892 12777 8202 8094 8100 15791 15791 0.0477783763659545 HSYRVLYL 8 Unmodified _HSYRVLYL_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.790283203125 2 525.790184 1049.56581 0.29261 0.00015385 -0.55545 -0.00029205 -0.26284 -0.0001382 525.7897352497058 46.602 1.2491 50.121 49.649 50.898 3.5192 139 79 2 0 0 0 0.82752 5 9175 9012;9050;9092;9136;9175 45.7 11.597 1 393210 12778 1732 8095 8101 15792;15793;15794;15795;15796 15796 0.04301466542756316 HSYRVLYL 8 Unmodified _HSYRVLYL_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 525.7901000976562 2 525.790184 1049.56581 0.30552 0.00016064 -0.61666 -0.00032424 -0.31115 -0.0001636 525.7896432757115 46.222 1.2224 49.973 49.57 50.792 3.7506 160 79 3 0 0 0 0.82752 2 8967 8967;9050 46.021 9.9768 1 504830 12779 1732 8095 8101 15797;15798 15797 0.04301466542756316 HSYRVLYL 8 Unmodified _HSYRVLYL_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 525.7899780273438 2 525.790184 1049.56581 0.36864 0.00019383 -0.59325 -0.00031193 -0.22462 -0.0001181 525.7896529212602 46.404 1.1568 50.04 49.649 50.806 3.6366 150 74 3 0 0 0 0.82752 4 8908 8908;8952;8989;9030 34.402 7.5181 1 528890 12780 1732 8095 8101 15799;15800;15801;15802 15799 0.04301466542756316 HSYTPTTSR 9 Unmodified _HSYTPTTSR_ 0 0 0 ENST00000466400.1_1_10:116225424-116227963:-|nuORF;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1 ENST00000466400.1_1_10:116225424-116227963:-|nuORF ENST00000466400.1_1_10:116225424-116227963:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 525.2537841796875 2 525.254163 1048.49377 -0.23601 -0.00012396 -0.14949 -7.8519E-05 -0.38549 -0.00020248 525.2539916192138 16.152 0.85795 16.152 15.739 16.597 0 126 100 2 0 0 0 0.40701 5 999 999;1032;1062;1094;1132 7.609 0 1 89074 12781 1431 8096 8102 15803;15804;15805;15806;15807 15803 -0.028534926016391182 HSYYGHSHL 9 Unmodified _HSYYGHSHL_ 0 0 0 REV__ENSG00000058063.16,ATP11B,chr3,+,I28.1,182897407,182898606|31|7.16|2|intron REV__ENSG00000058063.16,ATP11B,chr3,+,I28.1,182897407,182898606|31|7.16|2|intron MSMS UPN48_class_I_Rep_1 5 550.7491455078125 2 550.749047 1099.48354 NaN NaN NaN NaN NaN NaN NaN 115.4 1 119.02 118.52 119.52 3.6282 0 0 0 0.39428 1 28071 28071 2.0598 0 1 + 12782 17709 8097 8103 15808 15808 -0.0622205553618187 HTALKLWMK 9 Unmodified _HTALKLWMK_ 0 0 0 nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A nc|ENSG00000006459|Q6ZMT4-2|KDM7A nc|ENSG00000006459|Q6ZMT4-2|KDM7A MSMS UPN48_class_I_Rep_2 6 564.3238525390625 2 564.323337 1126.63212 NaN NaN NaN NaN NaN NaN NaN 97.018 1 100.8 100.3 101.3 3.7804 0 0 0 0.39598 1 23056 23056 1.6526 0 1 12783 718 8098 8104 15809 15809 0.07386959113136982 HTDDPLTWDY 10 Unmodified _HTDDPLTWDY_ 0 0 0 ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENSG00000108651|ENST00000261708|UTP6 ENST00000583408.5_1_17:30207568-30228646:-|nuORF ENST00000583408.5_1_17:30207568-30228646:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 631.7696533203125 2 631.769842 1261.52513 0.47585 0.00030063 -0.21815 -0.00013782 0.25769 0.0001628 631.7696512838128 59.935 0.66293 63.334 62.923 63.586 3.3982 73 41 2 0 0 0 0.21356 3 13966 13872;13912;13966 45.7 32.657 1 223620 12784 1872 8099 8105 15810;15811;15812 15812 -0.09516964358181212 HTDDPLTWDY 10 Unmodified _HTDDPLTWDY_ 0 0 0 ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENSG00000108651|ENST00000261708|UTP6 ENST00000583408.5_1_17:30207568-30228646:-|nuORF ENST00000583408.5_1_17:30207568-30228646:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 631.76904296875 2 631.769842 1261.52513 0.49081 0.00031008 -0.19565 -0.0001236 0.29516 0.00018648 631.7696814529681 60.185 0.74953 63.458 63.088 63.838 3.2731 72 46 2 0 0 0 0.32646 5 14025 13985;14025;14029;14039;14071 26.268 18.785 1 184250 12785 1872 8099 8105 15813;15814;15815;15816;15817 15814 -0.09516964358181212 HTDDPLTWDY 10 Unmodified _HTDDPLTWDY_ 0 0 0 ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENSG00000108651|ENST00000261708|UTP6 ENST00000583408.5_1_17:30207568-30228646:-|nuORF ENST00000583408.5_1_17:30207568-30228646:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 631.7708740234375 2 631.769842 1261.52513 0.37499 0.00023691 0.071225 4.4998E-05 0.44621 0.0002819 631.7699226572962 60.233 0.60862 63.398 63.089 63.697 3.1651 65 35 3 0 0 0 0.3776 2 14097 14054;14097 21.537 14.814 1 133750 12786 1872 8099 8105 15818;15819 15819 -0.09516964358181212 HTDEDTFFGQ 10 Unmodified _HTDEDTFFGQ_ 0 0 0 REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5 REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5 MSMS UPN47_class_I_Rep_2 3 598.74560546875 2 598.746367 1195.47818 NaN NaN NaN NaN NaN NaN NaN 25.268 1 28.75 28.25 29.25 3.483 0 0 0 0.53105 1 3482 3482 1.6526 0 1 + 12787 17810 8100 8106 15820 15820 -0.1117382390932562 HTDTTVKF 8 Unmodified _HTDTTVKF_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MSMS UPN47_class_I_Rep_2 3 474.74261474609375 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 23.856 1 27.322 26.822 27.822 3.4655 0 0 0 0.40157 1 3067 3067 7.2892 0 1 12788 1166;2720 8101 8107 15821 15821 -0.004590919992324416 HTDVGLLEY 9 Unmodified _HTDVGLLEY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS UPN47_class_I_Rep_1 2 523.7610473632812 2 523.761289 1045.50803 0.22549 0.0001181 -0.68556 -0.00035907 -0.46007 -0.00024097 523.7609297467469 52.462 0.86378 56.021 55.709 56.573 3.5585 139 62 3 0 0 0 0.082592 2 11692 11653;11692 37.974 11.09 1 453500 12789 5311 8102 8108 15822;15823 15823 -0.012908401733284336 HTDVGLLEY 9 Unmodified _HTDVGLLEY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS UPN47_class_I_Rep_2 3 523.7613525390625 2 523.761289 1045.50803 0.11781 6.1705E-05 -0.33379 -0.00017483 -0.21598 -0.00011312 523.7610873754963 52.673 1.0158 56.006 55.759 56.775 3.3332 143 73 3 0 0 0 0.10817 4 11847 11720;11761;11801;11847 32.305 10.183 1 417290 12790 5311 8102 8108 15824;15825;15826;15827 15827 -0.012908401733284336 HTDVGLLEY 9 Unmodified _HTDVGLLEY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS UPN47_class_I_Rep_3 4 523.7606811523438 2 523.761289 1045.50803 0.39314 0.00020591 -0.39531 -0.00020705 -0.0021707 -1.1369E-06 523.7608925634835 52.861 0.93054 56.055 55.816 56.746 3.1948 117 59 3 0 0 0 0.061943 4 11854 11854;11895;11936;11978 43.858 16.975 1 413750 12791 5311 8102 8108 15828;15829;15830;15831 15828 -0.012908401733284336 HTEQFLSF 8 Unmodified _HTEQFLSF_ 0 0 0 REV__ENST00000296161.8_1_3:122288743-122288839:+|nuORF REV__ENST00000296161.8_1_3:122288743-122288839:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 504.80902099609375 2 504.742899 1007.47125 0.26723 0.00013488 0.34824 0.00017577 0.61547 0.00031065 504.7430395484724 48.559 0.58028 48.559 48.285 48.866 0 97 56 2 0 0 0 0.72333 1 10211 10211 4.756 0 1 239480 + 12792 21650 8103 8109 15832 15832 -0.03219091999221746 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|1|intron;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|4|intron;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000159023|P11171-5|EPB41 nc|ENSG00000159023|P11171-5|EPB41 MULTI-MSMS UPN47_class_I_Rep_1 2 547.2798461914062 2 547.279846 1092.54514 -0.057357 -3.139E-05 0.16951 9.2769E-05 0.11215 6.1378E-05 547.279873314281 20.546 0.7223 24.19 23.842 24.564 3.6436 133 75 2 0 0 0 0.12096 4 2075 2004;2041;2075;2109 29.841 13.691 1 94780 12793 1225;3819 8104 8110 15833;15834;15835;15836 15835 0.002568313724395921 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|1|intron;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|4|intron;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000159023|P11171-5|EPB41 nc|ENSG00000159023|P11171-5|EPB41 MULTI-MSMS UPN47_class_I_Rep_2 3 547.2797241210938 2 547.279846 1092.54514 0.023867 1.3062E-05 -0.078073 -4.2728E-05 -0.054206 -2.9666E-05 547.2797364113222 20.784 0.68676 24.191 23.93 24.617 3.4074 134 72 2 0 0 0 0.40701 4 2198 2166;2198;2233;2287 7.609 3.2797 1 84681 12794 1225;3819 8104 8110 15837;15838;15839;15840 15838 0.002568313724395921 HTETKTITY 9 Unmodified _HTETKTITY_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|1|intron;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|4|intron;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000159023|P11171-5|EPB41 nc|ENSG00000159023|P11171-5|EPB41 MULTI-MSMS UPN47_class_I_Rep_3 4 547.2800903320312 2 547.279846 1092.54514 -0.33216 -0.00018178 0.34858 0.00019077 0.016424 8.9887E-06 547.2800573897256 20.961 0.83692 24.311 24.039 24.875 3.3496 115 74 2 0 0 0 0.38714 2 2278 2238;2278 8.7454 2.5396 1 73537 12795 1225;3819 8104 8110 15841;15842 15842 0.002568313724395921 HTEVIGTTK 9 Unmodified _HTEVIGTTK_ 0 0 0 REV__ENST00000468422.1_1_3:50293627-50293753:+|nuORF REV__ENST00000468422.1_1_3:50293627-50293753:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.26885986328125 2 493.269281 984.52401 -0.2978 -0.0001469 -0.040396 -1.9926E-05 -0.3382 -0.00016682 493.2692341140589 28.566 0.50035 32.332 32.053 32.554 3.7662 59 44 2 0 0 0 0.49026 1 4463 4463 1.6526 0.96225 1 47557 + 12796 17750 8105 8111 15843 15843 0.031128660635886263 HTFFLTDTF 9 Unmodified _HTFFLTDTF_ 0 0 0 REV__Tigger1_dup3996|chr5:39018393-39020720:+|2.5798590199920497|0.1475621735342286|4.13|151.0|22|2|sense REV__Tigger1_dup3996|chr5:39018393-39020720:+|2.5798590199920497|0.1475621735342286|4.13|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 564.7996215820312 2 564.771657 1127.52876 NaN NaN NaN NaN NaN NaN NaN 36.955 1 40.201 39.701 40.701 3.247 0 0 0 0.39518 1 7029 7029 1.8442 0 1 + 12797 32431 8106 8112 15844 15844 -0.02990249793674593 HTFKNLDQIR 10 Unmodified _HTFKNLDQIR_ 0 0 0 REV__L1MC5a_dup8115|chr8:52697086-52697767:+|1.8266895274917745|0.0278126097363188|6.04|151.0|34|1|anti-sense REV__L1MC5a_dup8115|chr8:52697086-52697767:+|1.8266895274917745|0.0278126097363188|6.04|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_1 5 636.3441162109375 2 636.346386 1270.67822 NaN NaN NaN NaN NaN NaN NaN 67.039 1 70.491 69.991 70.991 3.4516 0 0 0 0.53105 1 15376 15376 2.7352 0.45242 1 + 12798 27175 8107 8113 15845 15845 0.05370695548936055 HTFRLLLTLQ 10 Unmodified _HTFRLLLTLQ_ 0 0 0 REV__L1ME1_dup3091|chr2:42995570-42996447:-|2.0856694134307143|0.1889298719074165|3.46|147.0|34|1|anti-sense REV__L1ME1_dup3091|chr2:42995570-42996447:-|2.0856694134307143|0.1889298719074165|3.46|147.0|34|1|anti-sense MSMS UPN48_class_I_Rep_3 7 621.37451171875 2 621.371872 1240.72919 NaN NaN NaN NaN NaN NaN NaN 91.305 1 95.168 94.668 95.668 3.8634 0 0 0 0.53105 1 21653 21653 2.9952 0 1 + 12799 27759 8108 8114 15846 15846 0.11845644593813631 HTGKDFMMK 9 Unmodified _HTGKDFMMK_ 0 0 0 L1PA13_dup7088|chr12:104743616-104744844:-|1.3591107992427236|0.0107668169936543|6.98|151.0|31|3|sense L1PA13_dup7088|chr12:104743616-104744844:-|1.3591107992427236|0.0107668169936543|6.98|151.0|31|3|sense L1PA13_dup7088|chr12:104743616-104744844:-|1.3591107992427236|0.0107668169936543|6.98|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.75830078125 2 547.759712 1093.50487 -0.032279 -1.7681E-05 -0.80387 -0.00044033 -0.83615 -0.00045801 547.7593325245388 27.63 0.68612 31.396 31.068 31.755 3.7662 79 56 2 0 0 0 0.47493 1 4219 4219 3.2813 1.2216 1 90249 12800 13791 8109 8115 15847 15847 -0.03814129823354051 HTHRRQRARKL 11 Unmodified _HTHRRQRARKL_ 0 0 0 LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 486.9587097167969 3 486.95902 1457.85523 0.28539 0.00013897 -0.5292 -0.0002577 -0.2438 -0.00011872 486.95859025709285 96.737 0.064041 96.737 96.723 96.787 0 5 3 2 0 0 0 0.68024 1 23532 23532 0.50596 0.34663 1 552760 12801 15680 8110 8116 15848 15848 0.1446158894243581 HTHRRQRARKL 11 Unmodified _HTHRRQRARKL_ 0 0 0 LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 486.95902 1457.85523 0.42803 0.00020843 -0.45859 -0.00022331 -0.030553 -1.4878E-05 486.95866158763744 92.884 0.068588 96.352 96.326 96.395 3.4687 -0.11963 -8.1334E-05 NaN 0.50596 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 38767 12802 15680 8110 8116 0.1446158894243581 HTHRRQRARKL 11 Unmodified _HTHRRQRARKL_ 0 0 0 LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 486.95902 1457.85523 0.14056 6.8445E-05 -0.58577 -0.00028524 -0.44521 -0.0002168 487.2930077917135 92.726 0.11891 96.35 96.31 96.429 3.624 -0.12148 -0.00026713 NaN 0.50596 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 102170 12803 15680 8110 8116 0.1446158894243581 HTHRRQRARKL 11 Unmodified _HTHRRQRARKL_ 0 0 0 LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 486.95902 1457.85523 0.25344 0.00012341 -0.25908 -0.00012616 -0.0056396 -2.7463E-06 486.9588741924577 92.655 0.20293 96.418 96.3 96.503 3.7629 -0.053512 0.00021013 NaN 0.50596 35 28 2 NaN NaN NaN NaN 0 NaN NaN 0 119660 12804 15680 8110 8116 0.1446158894243581 HTHRRQRARKL 11 Unmodified _HTHRRQRARKL_ 0 0 0 LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|4|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 486.95902 1457.85523 0.24151 0.00011761 -0.45263 -0.00022041 -0.21112 -0.00010281 486.9588237221447 92.623 0.1199 96.502 96.455 96.575 3.8782 0.029664 -7.2633E-05 NaN 0.50596 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 101500 12805 15680 8110 8116 0.1446158894243581 HTKCKRVPK 9 Unmodified _HTKCKRVPK_ 0 0 0 REV__ENSG00000178171|ENST00000321420|AMER3 REV__ENSG00000178171|ENST00000321420|AMER3 MSMS UPN46_class_I_Rep_3 1 548.8026123046875 2 548.824035 1095.63352 NaN NaN NaN NaN NaN NaN NaN 12.161 1 12.161 11.661 12.661 0 0 0 0 0.40098 1 41 41 0.45834 0.45834 1 + 12806 20641 8111 8117 15849 15849 0.08952593201911441 HTKEFPTDAF 10 Unmodified _HTKEFPTDAF_ 0 0 0 ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-3|TRPM8 ENSG00000144481|ENST00000324695|TRPM8 ENSG00000144481|ENST00000324695|TRPM8 MULTI-SECPEP UPN48_class_I_Rep_3 7 596.2794189453125 2 596.785296 1191.55604 0.47434 0.00028308 -3.4011 -0.0020297 -2.9268 -0.0017467 597.2860725818857 58.399 0.21358 61.922 61.865 62.079 3.5231 17 13 2 0 0 0 0.84575 1 12684 12684 16.149 6.766 1 78104 12807 3356 8112 8118 15850 15850 -0.032077662532856266 HTKHPLKK 8 Unmodified _HTKHPLKK_ 0 0 0 REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 494.7189636230469 2 494.806168 987.597784 -0.27635 -0.00013674 -1.3102 -0.00064829 -1.5865 -0.00078503 494.8053897966269 33.439 0.5593 37.137 36.864 37.423 3.6983 47 36 2 0 0 0 0.72333 1 5828 5828 0.6015 0.6015 1 45241 + 12808 22521 8113 8119 15851 15851 0.10348879016555657 HTKLHLYQII 10 Unmodified _HTKLHLYQII_ 0 0 0 REV__L1MEg_dup4693|chr5:39005081-39005784:-|1.9102414607620235|0.0761099796155787|4.65|151.0|4|1|sense REV__L1MEg_dup4693|chr5:39005081-39005784:-|1.9102414607620235|0.0761099796155787|4.65|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 633.386962890625 2 633.371872 1264.72919 NaN NaN NaN NaN NaN NaN NaN 85.803 1 89.409 88.909 89.909 3.6059 0 0 0 0.53105 1 20535 20535 1.4819 0 1 + 12809 28753 8114 8120 15852 15852 0.10741644593804267 HTKRESQLV 9 Unmodified _HTKRESQLV_ 0 0 0 REV__L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|157|3|sense REV__L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|157|3|sense MSMS UPN48_class_I_Rep_1 5 549.3072509765625 2 549.306729 1096.59891 NaN NaN NaN NaN NaN NaN NaN 77.702 1 81.224 80.724 81.724 3.5221 0 0 0 0.39428 1 18505 18505 2.0598 0 1 + 12810 24768 8115 8121 15853 15853 0.05447048594805892 HTKRNRRFV 9 Unmodified _HTKRNRRFV_ 0 0 0 REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|42|3|sense REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|42|3|sense MSMS UPN46_class_I_Rep_3 1 405.2402038574219 3 405.239012 1212.69521 NaN NaN NaN NaN NaN NaN NaN 95.405 1 95.405 94.905 95.905 0 0 0 0 0.38394 1 23162 23162 4.5289 0.94181 1 + 12811 25923 8116 8122 15854 15854 0.09736660945418407 HTKRNRRFV 9 Unmodified _HTKRNRRFV_ 0 0 0 REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|42|3|sense REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|42|3|sense MSMS UPN48_class_I_Rep_3 7 405.2396240234375 3 405.239012 1212.69521 NaN NaN NaN NaN NaN NaN NaN 91.137 1 95 94.5 95.5 3.8634 0 0 0 0.38667 1 21610 21610 3.8763 0.80407 1 + 12812 25923 8116 8122 15855 15855 0.09736660945418407 HTKRNRRFV 9 Unmodified _HTKRNRRFV_ 0 0 0 REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|42|3|sense REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|42|3|sense MSMS UPN48_class_I_Rep_3 7 405.2398681640625 3 405.239012 1212.69521 NaN NaN NaN NaN NaN NaN NaN 98.473 1 102.38 101.88 102.88 3.9022 0 0 0 0.39334 1 23336 23336 2.2828 0.3764 1 + 12813 25923 8116 8122 15856 15856 0.09736660945418407 HTKTPSVSHQP 11 Unmodified _HTKTPSVSHQP_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 406.8787536621094 3 406.879038 1217.61528 -0.53059 -0.00021589 -0.074 -3.0109E-05 -0.60459 -0.00024599 406.87902836530753 13.995 0.46461 17.452 17.323 17.787 3.457 100 56 2 0 0 0 0.47895 1 462 462 8.2864 0.34103 1 130780 12814 14552 8117 8123 15857 15857 0.015181297608933164 HTKTPSVSHQP 11 Unmodified _HTKTPSVSHQP_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 406.8787841796875 3 406.879038 1217.61528 -0.9992 -0.00040655 0.37151 0.00015116 -0.62769 -0.00025539 406.87926718982555 14.076 0.38166 17.463 17.372 17.754 3.3871 99 43 3 0 0 0 0.58817 1 483 483 5.5233 0.47577 1 102580 12815 14552 8117 8123 15858 15858 0.015181297608933164 HTKTPSVSHQP 11 Unmodified _HTKTPSVSHQP_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 406.85797119140625 3 406.879038 1217.61528 -0.9992 -0.00040655 0.37151 0.00015116 -0.62769 -0.00025539 406.87926718982555 14.076 0.38166 17.463 17.372 17.754 3.3871 99 43 3 0 0 0 22.551 1 492 492 3.5927 0.52041 1 102580 12816 14552 8117 8123 15859 15859 0.015181297608933164 HTKTPSVSHQP 11 Unmodified _HTKTPSVSHQP_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|107|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 406.879038 1217.61528 -0.47642 -0.00019384 0.39513 0.00016077 -0.081282 -3.3072E-05 406.87923691930706 17.343 0.062719 17.343 17.308 17.371 0 -0.076385 0.00022222 NaN 8.2864 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 24289 12817 14552 8117 8123 0.015181297608933164 HTKVLQLSSRP 11 Unmodified _HTKVLQLSSRP_ 0 0 0 REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 633.3695068359375 2 633.369861 1264.72517 0.44503 0.00028187 -0.38554 -0.00024419 0.059491 3.768E-05 633.3693952903334 86.176 0.087524 89.789 89.767 89.855 3.613 16 10 2 0 0 0 22.551 1 20640 20640 6.1918 2.0023 1 75327 + 12818 23221 8118 8124 15860 15860 0.10339555100085818 HTKVLQLSSRP 11 Unmodified _HTKVLQLSSRP_ 0 0 0 REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 633.3875122070312 2 633.369861 1264.72517 0.4953 0.00031371 -0.68756 -0.00043548 -0.19226 -0.00012177 633.369320009176 85.773 0.19806 89.479 89.419 89.617 3.7058 29 18 2 0 0 0 22.551 1 20446 20446 4.1895 0.59301 1 96190 + 12819 23221 8118 8124 15861 15861 0.10339555100085818 HTLMFIALY 9 Unmodified _HTLMFIALY_ 0 0 0 L1ME1_dup15749|chr8:129914838-129915427:+|1.0407653575209237|0.005663129402658|7.52|150.0|8|1|sense L1ME1_dup15749|chr8:129914838-129915427:+|1.0407653575209237|0.005663129402658|7.52|150.0|8|1|sense L1ME1_dup15749|chr8:129914838-129915427:+|1.0407653575209237|0.005663129402658|7.52|150.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 554.7977905273438 2 554.79662 1107.57869 NaN NaN NaN NaN NaN NaN NaN 45.756 1 49.109 48.609 49.609 3.3534 0 0 0 0.35339 1 9672 9672 7.9102 0 1 12820 12235 8119 8125 15862 15862 0.029201616106320216 HTLTTIEF 8 Unmodified _HTLTTIEF_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|125|3|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|125|3|anti-sense MSMS UPN48_class_I_Rep_2 6 481.2531433105469 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 65.535 1 69.014 68.514 69.514 3.4792 0 0 0 0.36705 1 14903 14903 18.135 1.9859 1 + 12821 27550 8120 8126 15863 15863 0.00982078660570096 HTLTTIEF 8 Unmodified _HTLTTIEF_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|125|3|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|125|3|anti-sense MSMS UPN48_class_I_Rep_3 7 481.2527160644531 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 65.48 1 68.988 68.488 69.488 3.5077 0 0 0 0.31372 1 14801 14801 30.225 3.9567 1 + 12822 27550 8120 8126 15864 15864 0.00982078660570096 HTNFSIFATY 10 Unmodified _HTNFSIFATY_ 0 0 0 REV__LTR12C_dup1572|chr9:71963357-71964735:+|1.4497059595056223|0.1797188466333661|3.01|151.0|21|2|sense REV__LTR12C_dup1572|chr9:71963357-71964735:+|1.4497059595056223|0.1797188466333661|3.01|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 600.7871704101562 2 600.787838 1199.56112 NaN NaN NaN NaN NaN NaN NaN 39.547 1 42.925 42.425 43.425 3.3785 0 0 0 0.53105 1 7779 7779 2.9952 0.69251 1 + 12823 30803 8121 8127 15865 15865 -0.030674623906634224 HTNVRVKVK 9 Unmodified _HTNVRVKVK_ 0 0 0 REV__nc|ENSG00000120694|Q92598-2|HSPH1 REV__nc|ENSG00000120694|Q92598-2|HSPH1 MSMS UPN46_class_I_Rep_3 1 540.8348388671875 2 540.835457 1079.65636 NaN NaN NaN NaN NaN NaN NaN 83.387 1 83.387 82.887 83.887 0 0 0 0 0.40098 1 19804 19804 0.45834 0.45834 1 + 12824 18707 8122 8128 15866 15866 0.11971935591031979 HTPRGKRL 8 Unmodified _HTPRGKRL_ 0 0 0 REV__ENST00000411875.1_1_7:42961424-42961481:-|nuORF REV__ENST00000411875.1_1_7:42961424-42961481:-|nuORF MSMS UPN47_class_I_Rep_1 2 482.79571533203125 2 482.793592 963.572632 NaN NaN NaN NaN NaN NaN NaN 112.83 1 116.4 115.9 116.9 3.572 0 0 0 0.40625 1 27826 27826 2.3027 0 1 + 12825 22193 8123 8129 15867 15867 0.08938824213998942 HTPSDTGHWG 10 Unmodified _HTPSDTGHWG_ 0 0 0 REV__MLT1C_dup9534|chr8:129994007-129994436:+|2.200459501314173|0.015243632219902|7.17|151.0|9|2|sense REV__MLT1C_dup9534|chr8:129994007-129994436:+|2.200459501314173|0.015243632219902|7.17|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 547.7356567382812 2 547.736137 1093.45772 0.025166 1.3784E-05 0.10372 5.6812E-05 0.12889 7.0596E-05 547.7362413156786 20.359 0.99175 23.767 23.318 24.31 3.4074 148 100 2 0 0 0 0.55983 2 2157 2157;2211 3.9444 2.1002 1 80645 + 12826 31660 8124 8130 15868;15869 15868 -0.0852694977847932 HTQEQKDLRK 10 Unmodified _HTQEQKDLRK_ 0 0 0 REV__L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|78|2|sense REV__L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|78|2|sense MSMS UPN46_class_I_Rep_3 1 641.8455810546875 2 641.84675 1281.67895 NaN NaN NaN NaN NaN NaN NaN 49.2 1 49.2 48.7 49.7 0 0 0 0 0.53105 1 10310 10310 1.3295 0 1 + 12827 29550 8125 8131 15870 15870 0.04937490197971783 HTQKKKKE 8 Unmodified _HTQKKKKE_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|53|1|sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|53|1|sense MSMS UPN47_class_I_Rep_3 4 513.8067626953125 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 87.472 1 90.859 90.359 91.359 3.3873 0 0 0 0.40738 1 21919 21919 0.79363 0 1 + 12828 29225 8126 8132 15871 15871 0.08640253945782206 HTQRTSLL 8 Unmodified _HTQRTSLL_ 0 0 0 REV__L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|293|2|anti-sense REV__L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|293|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 478.26953125 2 478.269616 954.524678 0.24647 0.00011788 0.050441 2.4124E-05 0.29691 0.000142 478.26966210619906 80.611 0.1557 80.611 80.495 80.651 0 19 17 2 0 0 0 0.72333 1 19004 19004 2.3027 0 1 52827 + 12829 29659 8127 8133 15872 15872 0.04559705503299938 HTRHMGTMF 9 Unmodified _HTRHMGTMF_ 0 0 0 nc|ENSG00000143257|Q14994-16|NR1I3;nc|ENSG00000143257|Q14994-4|NR1I3;nc|ENSG00000143257|Q14994-15|NR1I3;nc|ENSG00000143257|Q14994-9|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-10|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3;nc|ENSG00000143257|Q14994-11|NR1I3;nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3 nc|ENSG00000143257|Q14994-16|NR1I3 nc|ENSG00000143257|Q14994-16|NR1I3 MSMS UPN48_class_I_Rep_1 5 559.253662109375 2 559.255128 1116.4957 NaN NaN NaN NaN NaN NaN NaN 23.18 1 26.74 26.24 27.24 3.5605 0 0 0 0.39518 1 2378 2378 1.8442 0 1 12830 3283 8128 8134 15873 15873 -0.0578847838899037 HTRQLELPL 9 Unmodified _HTRQLELPL_ 0 0 0 REV__nc|ENSG00000183530|Q5THK1-3|PRR14L REV__nc|ENSG00000183530|Q5THK1-3|PRR14L MSMS UPN47_class_I_Rep_2 3 553.818603515625 2 553.819473 1105.62439 NaN NaN NaN NaN NaN NaN NaN 14.279 1 17.666 17.166 18.166 3.3871 0 0 0 0.39598 1 535 535 1.6526 0.96225 1 + 12831 20790 8129 8135 15874 15874 0.07580523117235316 HTRQYCYL 8 Unmodified _HTRQYCYL_ 0 0 0 REV__L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|201|1|anti-sense REV__L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|201|1|anti-sense MSMS UPN47_class_I_Rep_3 4 542.255126953125 2 542.255651 1082.49675 NaN NaN NaN NaN NaN NaN NaN 58.675 1 61.841 61.341 62.341 3.1658 0 0 0 0.39242 1 13652 13652 10.824 1.4408 1 + 12832 26333 8130 8136 15875 15875 -0.041199407484555195 HTRTLHLL 8 Unmodified _HTRTLHLL_ 0 0 0 ENST00000535666.2_1_2:36818039-36818180:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENST00000535666.2_1_2:36818039-36818180:-|nuORF ENST00000535666.2_1_2:36818039-36818180:-|nuORF MSMS UPN47_class_I_Rep_1 2 495.7959289550781 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 63.251 1 66.611 66.111 67.111 3.3595 0 0 0 0.40738 1 14954 14954 0.79363 0 1 12833 4504 8131 8137 15876 15876 0.08184288636914516 HTRTLHLL 8 Unmodified _HTRTLHLL_ 0 0 0 ENST00000535666.2_1_2:36818039-36818180:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENST00000535666.2_1_2:36818039-36818180:-|nuORF ENST00000535666.2_1_2:36818039-36818180:-|nuORF MSMS UPN47_class_I_Rep_1 2 495.7962341308594 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.15 1 79.553 79.053 80.053 3.4034 0 0 0 0.40738 1 18829 18829 0.79363 0 1 12834 4504 8131 8137 15877 15877 0.08184288636914516 HTRTLHLL 8 Unmodified _HTRTLHLL_ 0 0 0 ENST00000535666.2_1_2:36818039-36818180:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENST00000535666.2_1_2:36818039-36818180:-|nuORF ENST00000535666.2_1_2:36818039-36818180:-|nuORF MSMS UPN47_class_I_Rep_2 3 495.7805480957031 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 82.113 1 85.511 85.011 86.011 3.3984 0 0 0 0.40738 1 20469 20469 0.79363 0 1 12835 4504 8131 8137 15878 15878 0.08184288636914516 HTRTLHLL 8 Unmodified _HTRTLHLL_ 0 0 0 ENST00000535666.2_1_2:36818039-36818180:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENST00000535666.2_1_2:36818039-36818180:-|nuORF ENST00000535666.2_1_2:36818039-36818180:-|nuORF MSMS UPN47_class_I_Rep_2 3 495.78045654296875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.571 1 86.983 86.483 87.483 3.4116 0 0 0 0.40581 1 20836 20836 2.8892 0 1 12836 4504 8131 8137 15879 15879 0.08184288636914516 HTRTLHLL 8 Unmodified _HTRTLHLL_ 0 0 0 ENST00000535666.2_1_2:36818039-36818180:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENST00000535666.2_1_2:36818039-36818180:-|nuORF ENST00000535666.2_1_2:36818039-36818180:-|nuORF MSMS UPN47_class_I_Rep_2 3 495.78045654296875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.818 1 87.229 86.729 87.729 3.4116 0 0 0 0.40738 1 20900 20900 0.79363 0 1 12837 4504 8131 8137 15880 15880 0.08184288636914516 HTSPLTQIR 9 Unmodified _HTSPLTQIR_ 0 0 0 ENSG00000113593|ENST00000261308|PPWD1;nc|ENSG00000113593|Q96BP3-2|PPWD1 ENSG00000113593|ENST00000261308|PPWD1 ENSG00000113593|ENST00000261308|PPWD1 MSMS UPN48_class_I_Rep_1 5 526.7969360351562 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 25.095 1 28.662 28.162 29.162 3.5667 0 0 0 0.38478 1 2870 2870 4.3292 2.0265 1 12838 2052 8132 8138 15881 15881 0.05371663566097595 HTSSSVYKMTG 11 Unmodified _HTSSSVYKMTG_ 0 0 0 MER11C_dup818|chr17:64510852-64511930:-|1.4871538461050369|0.2191923787355724|2.76|151.0|40|1|anti-sense MER11C_dup818|chr17:64510852-64511930:-|1.4871538461050369|0.2191923787355724|2.76|151.0|40|1|anti-sense MER11C_dup818|chr17:64510852-64511930:-|1.4871538461050369|0.2191923787355724|2.76|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.2825317382812 2 599.282063 1196.54957 0.51967 0.00031143 -3.0737 -0.001842 -2.5541 -0.0015306 599.2802681421664 58.726 0.36064 62.008 61.804 62.164 3.2818 31 20 2 0 0 0 0.65271 1 13645 13645 2.9952 1.151 1 73917 12839 15799 8133 8139 15882 15882 -0.04084027476301344 HTTFTEYKI 9 Unmodified _HTTFTEYKI_ 0 0 0 L1M4_dup128|chr1:30958996-30959625:+|1.0387640784994014|0.1505236911740973|2.79|151.0|21|3|sense L1M4_dup128|chr1:30958996-30959625:+|1.0387640784994014|0.1505236911740973|2.79|151.0|21|3|sense L1M4_dup128|chr1:30958996-30959625:+|1.0387640784994014|0.1505236911740973|2.79|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 570.2340087890625 2 570.290214 1138.56587 NaN NaN NaN NaN NaN NaN NaN 71.989 1 71.989 71.489 72.489 0 0 0 0 0.38916 1 16615 16615 3.2813 0.28607 1 12840 8829 8134 8140 15883 15883 0.0021342175209611014 HTTQLTLYY 9 Unmodified _HTTQLTLYY_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|58|1|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|58|1|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|58|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2904663085938 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.21527 1 18245 18245 19.257 1.1106 1 5554300 12841 13639 8135 8141 15884 15884 0.0021342175209611014 HTTTEYTFF 9 Unmodified _HTTTEYTFF_ 0 0 0 L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|21|1|sense L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|21|1|sense L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|21|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.2619018554688 2 573.758746 1145.50294 0.39409 0.00022611 -0.019405 -1.1134E-05 0.37469 0.00021498 573.7585807838826 68.553 0.85007 71.823 71.507 72.357 3.2696 185 73 3 0 0 0 0.35081 2 16519 16519;16750 10.824 2.0785 1 333300 12842 13567 8136 8142 15885;15886 15885 -0.06399144035935933 HTWMVIKLL 9 Unmodified _HTWMVIKLL_ 0 0 0 ENST00000474385.1_1_X:24195956-24197386:+|nuORF ENST00000474385.1_1_X:24195956-24197386:+|nuORF ENST00000474385.1_1_X:24195956-24197386:+|nuORF MSMS UPN46_class_I_Rep_3 1 570.8325805664062 2 570.833537 1139.65252 NaN NaN NaN NaN NaN NaN NaN 13.031 1 13.031 12.531 13.531 0 0 0 0 0.4007 1 278 278 0.52476 0 1 12843 6947 8137 8143 15887 15887 0.08828129772973625 HTYLLFGVL 9 Unmodified _HTYLLFGVL_ 0 0 0 L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|29|1|anti-sense L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|29|1|anti-sense L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|29|1|anti-sense MSMS UPN48_class_I_Rep_1 5 531.8016967773438 2 531.80276 1061.59097 NaN NaN NaN NaN NaN NaN NaN 60.822 1 64.296 63.796 64.796 3.4737 0 0 0 0.28335 1 13486 13486 11.64 4.3511 1 12844 13273 8138 8144 15888 15888 0.06263521345317713 HTYLLFGVL 9 Unmodified _HTYLLFGVL_ 0 0 0 L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|29|1|anti-sense L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|29|1|anti-sense L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|29|1|anti-sense MSMS UPN48_class_I_Rep_3 7 531.8011474609375 2 531.80276 1061.59097 NaN NaN NaN NaN NaN NaN NaN 60.647 1 64.16 63.66 64.66 3.5128 0 0 0 0.35339 1 13342 13342 7.9102 0.62092 1 12845 13273 8138 8144 15889 15889 0.06263521345317713 HTYTLFLTF 9 Unmodified _HTYTLFLTF_ 0 0 0 Tigger12_dup742|chr12:104540379-104540731:-|2.2753582002261865|0.00245147571825|9.86|151.0|2|1|sense Tigger12_dup742|chr12:104540379-104540731:-|2.2753582002261865|0.00245147571825|9.86|151.0|2|1|sense Tigger12_dup742|chr12:104540379-104540731:-|2.2753582002261865|0.00245147571825|9.86|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 571.7993774414062 2 571.797675 1141.5808 0.49388 0.0002824 -0.1391 -7.9534E-05 0.35478 0.00020286 571.7975977740679 67.853 0.58724 71.361 71.141 71.728 3.5083 82 50 2 0 0 0 0.41259 1 15688 15688 7.2892 1.9923 1 138840 12846 33225 8139 8145 15890 15890 0.015669136200813227 HVAHTCDPSY 10 Unmodified _HVAHTCDPSY_ 0 0 0 AluJb_dup15906|chr2:96631765-96632062:+|1.0089817877105682|0.0960240262228105|3.39|151.0|6|2|sense AluJb_dup15906|chr2:96631765-96632062:+|1.0089817877105682|0.0960240262228105|3.39|151.0|6|2|sense AluJb_dup15906|chr2:96631765-96632062:+|1.0089817877105682|0.0960240262228105|3.39|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 564.8439331054688 2 565.240198 1128.46584 NaN NaN NaN NaN NaN NaN NaN 43.282 1 46.524 46.024 47.024 3.2419 0 0 0 0.53105 1 8966 8966 3.5965 0.70727 1 12847 35 8140 8146 15891 15891 -0.09325138853364479 HVAIIGVY 8 Unmodified _HVAIIGVY_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|11|1|sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 436.254150390625 2 436.255446 870.496338 NaN NaN NaN NaN NaN NaN NaN 103.02 1 106.64 106.14 107.14 3.6164 0 0 0 0.40581 1 24833 24833 2.8892 0.58649 1 + 12848 23282 8141 8147 15892 15892 0.05591007593989161 HVAIKEATTF 10 Unmodified _HVAIKEATTF_ 0 0 0 L1MA4_dup9692|chr20:45027516-45028327:-|1.775284609021767|0.0119281796413546|7.22|151.0|56|3|anti-sense L1MA4_dup9692|chr20:45027516-45028327:-|1.775284609021767|0.0119281796413546|7.22|151.0|56|3|anti-sense L1MA4_dup9692|chr20:45027516-45028327:-|1.775284609021767|0.0119281796413546|7.22|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_2 3 558.8056030273438 2 558.806031 1115.59751 NaN NaN NaN NaN NaN NaN NaN 25.177 1 28.66 28.16 29.16 3.483 0 0 0 0.53105 1 3458 3458 1.3295 0.5359 1 12849 9752 8142 8148 15893 15893 0.044334145060247465 HVAKFSTL 8 Unmodified _HVAKFSTL_ 0 0 0 REV__ENSG00000203972|ENST00000371197|GLYATL3 REV__ENSG00000203972|ENST00000371197|GLYATL3 MULTI-MSMS UPN47_class_I_Rep_3 4 451.7576599121094 2 451.758352 901.502152 -0.7639 -0.0003451 -0.44171 -0.00019955 -1.2056 -0.00054464 451.758257406483 35.757 0.51682 39.012 38.825 39.342 3.2547 41 33 2 0 0 0 0.82752 1 6689 6689 2.0598 0 1 61580 + 12850 21176 8143 8149 15894 15894 0.047461061056765175 HVAKQNEK 8 Unmodified _HVAKQNEK_ 0 0 0 REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|27|3|sense REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 477.2597351074219 2 477.261791 952.509028 NaN NaN NaN NaN NaN NaN NaN 23.749 1 23.749 23.249 24.249 0 0 0 0 0.40625 1 3027 3027 2.3027 0 1 + 12851 32165 8144 8150 15895 15895 0.030874189862288404 HVCCEWWC 8 Unmodified _HVCCEWWC_ 0 0 0 REV__ENST00000509294.1_1_5:470082-471349:+|nuORF REV__ENST00000509294.1_1_5:470082-471349:+|nuORF MSMS UPN46_class_I_Rep_3 1 533.1912231445312 2 533.190608 1064.36666 NaN NaN NaN NaN NaN NaN NaN 116.03 1 116.03 115.53 116.53 0 0 0 0 0.40738 1 28709 28709 0.79363 0 1 + 12852 22728 8145 8151 15896 15896 -0.1629457634346636 HVCRLRRS 8 Unmodified _HVCRLRRS_ 0 0 0 REV__ENST00000373895.7_1_10:60154814-60154868:+|nuORF REV__ENST00000373895.7_1_10:60154814-60154868:+|nuORF MSMS UPN47_class_I_Rep_1 2 513.7896728515625 2 513.790527 1025.5665 NaN NaN NaN NaN NaN NaN NaN 35.624 1 39.3 38.8 39.8 3.6762 0 0 0 0.40643 1 6555 6555 2.0598 0.40713 1 + 12853 21994 8146 8152 15897 15897 0.054739827108278405 HVDELEESILL 11 Unmodified _HVDELEESILL_ 0 0 0 L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|59|1|sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|59|1|sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|59|1|sense MSMS UPN48_class_I_Rep_3 7 648.8388061523438 2 648.837725 1295.6609 NaN NaN NaN NaN NaN NaN NaN 52.572 1 56.17 55.67 56.67 3.5979 0 0 0 0.38417 1 10870 10870 8.7454 4.4162 1 12854 9519 8147 8153 15898 15898 0.02489310432633829 HVDIAALLI 9 Unmodified _HVDIAALLI_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MSMS UPN46_class_I_Rep_3 1 482.7957763671875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 38.608 1 38.608 38.108 39.108 0 0 0 0 0.39518 1 7363 7363 1.8442 0.36234 1 12855 4620 8148 8154 15899 15899 0.09207234828284072 HVDIPHFVY 9 Unmodified _HVDIPHFVY_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 563.7322998046875 2 563.787641 1125.56073 NaN NaN NaN NaN NaN NaN NaN 43.565 1 47.259 46.759 47.759 3.6938 0 0 0 0.38299 1 8971 8971 4.756 1.1595 1 12856 10871 8149 8155 15900 15900 0.002971626801581806 HVDIPHFVY 9 Unmodified _HVDIPHFVY_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 563.7852172851562 2 563.787641 1125.56073 NaN NaN NaN NaN NaN NaN NaN 43.757 1 47.452 46.952 47.952 3.6951 0 0 0 0.35339 1 9030 9030 7.9102 1.7044 1 12857 10871 8149 8155 15901 15901 0.002971626801581806 HVDIPHFVY 9 Unmodified _HVDIPHFVY_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 563.7849731445312 2 563.787641 1125.56073 NaN NaN NaN NaN NaN NaN NaN 43.783 1 47.478 46.978 47.978 3.6951 0 0 0 0.38299 1 9038 9038 4.756 1.1595 1 12858 10871 8149 8155 15902 15902 0.002971626801581806 HVDIPHFVYL 10 Unmodified _HVDIPHFVYL_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 620.3272094726562 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 53.547 1 57.074 56.574 57.574 3.5278 0 0 0 0.53105 1 12006 12006 1.6526 0.32309 1 12859 10871 8150 8156 15903 15903 0.03501693777047876 HVDIPHFVYL 10 Unmodified _HVDIPHFVYL_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_2 3 620.3284301757812 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 53.86 1 57.179 56.679 57.679 3.3187 0 0 0 0.53105 1 12130 12130 1.6526 0.32309 1 12860 10871 8150 8156 15904 15904 0.03501693777047876 HVDIPHFVYL 10 Unmodified _HVDIPHFVYL_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3268432617188 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 53.617 1 57.226 56.726 57.726 3.6098 0 0 0 0.53105 1 11255 11255 15.847 1.9411 1 12861 10871 8150 8156 15905 15905 0.03501693777047876 HVDIPHFVYL 10 Unmodified _HVDIPHFVYL_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3284912109375 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 53.642 1 57.252 56.752 57.752 3.6098 0 0 0 0.53105 1 11262 11262 20.454 3.3407 1 12862 10871 8150 8156 15906 15906 0.03501693777047876 HVDLLINKY 9 Unmodified _HVDLLINKY_ 0 0 0 nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2 nc|ENSG00000116171|P22307-3|SCP2 nc|ENSG00000116171|P22307-3|SCP2 MULTI-MSMS UPN47_class_I_Rep_1 2 557.8162231445312 2 557.816399 1113.61824 0.13534 7.5493E-05 0.19033 0.00010617 0.32567 0.00018166 557.8164233764148 45.818 1.0012 49.518 49.107 50.109 3.6999 130 60 3 0 0 0 0.0078401 8 9638 9572;9600;9638;9679;9717;9758;9772;9821 96.367 70.967 1 307560 12863 2167 8151 8157 15907;15908;15909;15910;15911;15912;15913;15914 15909 0.06598004885699993 HVDLLINKY 9 Unmodified _HVDLLINKY_ 0 0 0 nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2 nc|ENSG00000116171|P22307-3|SCP2 nc|ENSG00000116171|P22307-3|SCP2 MULTI-MSMS UPN47_class_I_Rep_2 3 557.8163452148438 2 557.816399 1113.61824 0.26574 0.00014824 0.081838 4.5651E-05 0.34758 0.00019389 557.8163497038931 46.227 1.0518 49.581 49.194 50.245 3.3534 167 74 3 0 0 0 0.006303 7 9810 9721;9768;9810;9849;9892;9935;9979 83.429 58.029 1 258440 12864 2167 8151 8157 15915;15916;15917;15918;15919;15920;15921 15917 0.06598004885699993 HVDLLINKY 9 Unmodified _HVDLLINKY_ 0 0 0 nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2 nc|ENSG00000116171|P22307-3|SCP2 nc|ENSG00000116171|P22307-3|SCP2 MULTI-MSMS UPN47_class_I_Rep_3 4 557.8165893554688 2 557.816399 1113.61824 0.29296 0.00016342 -0.084401 -4.708E-05 0.20856 0.00011634 557.8162949780981 46.386 0.96773 49.63 49.176 50.144 3.2439 132 60 3 0 0 0 0.0050147 8 9862 9822;9862;9900;9939;9980;10021;10033;10070 93.166 64.084 1 238990 12865 2167 8151 8157 15922;15923;15924;15925;15926;15927;15928;15929 15923 0.06598004885699993 HVDLLINKY 9 Unmodified _HVDLLINKY_ 0 0 0 nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2 nc|ENSG00000116171|P22307-3|SCP2 nc|ENSG00000116171|P22307-3|SCP2 MSMS UPN47_class_I_Rep_3 4 557.8154296875 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 47.046 1 50.29 49.79 50.79 3.2439 0 0 0 0.37692 1 10119 10119 6.2058 2.9245 1 12866 2167 8151 8157 15930 15930 0.06598004885699993 HVDPENFRLL 10 Unmodified _HVDPENFRLL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 620.32763671875 2 620.327662 1238.64077 0.4565 0.00028318 -0.21381 -0.00013263 0.24269 0.00015055 620.3273876159384 53.818 0.56657 57.333 57.094 57.66 3.5143 96 41 3 0 0 0 0.36464 2 11323 11323;11373 22.736 4.5899 1 424230 + 12867 5729 8152 8158 15931;15932 15931 0.03099604283329427 HVDPENFRLLG 11 Unmodified _HVDPENFRLLG_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_1 5 648.838134765625 2 648.838394 1295.66223 NaN NaN NaN NaN NaN NaN NaN 52.484 1 56.007 55.507 56.507 3.5227 0 0 0 0.38417 1 10918 10918 7.609 0 1 + 12868 5729 8153 8159 15933 15933 0.026229893120444103 HVDPENFRLLG 11 Unmodified _HVDPENFRLLG_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_1 5 648.8394165039062 2 648.838394 1295.66223 NaN NaN NaN NaN NaN NaN NaN 52.642 1 56.161 55.661 56.661 3.5192 0 0 0 0.38417 1 10967 10967 4.5289 0.93237 1 + 12869 5729 8153 8159 15934 15934 0.026229893120444103 HVDPENFRLLG 11 Unmodified _HVDPENFRLLG_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_2 6 648.8385620117188 2 648.838394 1295.66223 NaN NaN NaN NaN NaN NaN NaN 52.545 1 56.184 55.684 56.684 3.639 0 0 0 0.36105 1 10925 10925 10.151 1.4052 1 + 12870 5729 8153 8159 15935 15935 0.026229893120444103 HVDPENFRLLG 11 Unmodified _HVDPENFRLLG_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_3 7 648.8406982421875 2 648.838394 1295.66223 NaN NaN NaN NaN NaN NaN NaN 52.632 1 56.23 55.73 56.73 3.5979 0 0 0 0.36105 1 10888 10888 14.405 1.3629 1 + 12871 5729 8153 8159 15936 15936 0.026229893120444103 HVDPENFRLLG 11 Unmodified _HVDPENFRLLG_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_3 7 648.8384399414062 2 648.838394 1295.66223 NaN NaN NaN NaN NaN NaN NaN 52.701 1 56.299 55.799 56.799 3.5979 0 0 0 0.38417 1 10909 10909 10.8 2.0541 1 + 12872 5729 8153 8159 15937 15937 0.026229893120444103 HVDRKYLLYI 10 Unmodified _HVDRKYLLYI_ 0 0 0 REV__ENST00000568781.1_1_15:72185941-72190124:-|nuORF REV__ENST00000568781.1_1_15:72185941-72190124:-|nuORF MSMS UPN48_class_I_Rep_1 5 440.5948791503906 3 440.587195 1318.73976 NaN NaN NaN NaN NaN NaN NaN 29.597 1 33.147 32.647 33.647 3.5499 0 0 0 0.53105 1 4137 4137 6.1918 4.2855 1 + 12873 23079 8154 8160 15938 15938 0.0931362724822975 HVDRKYLLYI 10 Unmodified _HVDRKYLLYI_ 0 0 0 REV__ENST00000568781.1_1_15:72185941-72190124:-|nuORF REV__ENST00000568781.1_1_15:72185941-72190124:-|nuORF MSMS UPN48_class_I_Rep_2 6 440.5947265625 3 440.587195 1318.73976 NaN NaN NaN NaN NaN NaN NaN 29.589 1 33.221 32.721 33.721 3.6316 0 0 0 0.53105 1 4225 4225 3.5871 0.95582 1 + 12874 23079 8154 8160 15939 15939 0.0931362724822975 HVDRKYLLYI 10 Unmodified _HVDRKYLLYI_ 0 0 0 REV__ENST00000568781.1_1_15:72185941-72190124:-|nuORF REV__ENST00000568781.1_1_15:72185941-72190124:-|nuORF MSMS UPN48_class_I_Rep_3 7 440.594482421875 3 440.587195 1318.73976 NaN NaN NaN NaN NaN NaN NaN 29.97 1 33.698 33.198 34.198 3.7286 0 0 0 0.53105 1 4267 4267 3.5871 0.95582 1 + 12875 23079 8154 8160 15940 15940 0.0931362724822975 HVDTYLNKHL 10 Unmodified _HVDTYLNKHL_ 0 0 0 REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 620.328125 2 620.327662 1238.64077 0.4565 0.00028318 -0.21381 -0.00013263 0.24269 0.00015055 620.3273876159384 53.818 0.56657 57.333 57.094 57.66 3.5143 96 41 3 0 0 0 0.44401 3 11284 11284;11326;11420 16.149 0 1 424230 + 12876 26429 8155 8161 15941;15942;15943 15941 0.03099604283329427 HVDTYLNKHL 10 Unmodified _HVDTYLNKHL_ 0 0 0 REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 620.8294677734375 2 620.327662 1238.64077 0.57384 0.00035597 -0.2023 -0.00012549 0.37154 0.00023047 620.3274605765271 53.81 0.53796 57.392 57.116 57.654 3.5817 82 39 3 0 0 0 0.44401 3 11299 11299;11342;11376 16.149 0 1 203800 + 12877 26429 8155 8161 15944;15945;15946 15944 0.03099604283329427 HVDTYLNKHL 10 Unmodified _HVDTYLNKHL_ 0 0 0 REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 620.8294677734375 2 620.327662 1238.64077 0.57384 0.00035597 -0.2023 -0.00012549 0.37154 0.00023047 620.3274605765271 53.81 0.53796 57.392 57.116 57.654 3.5817 82 39 3 0 0 0 0.84575 1 11299 11299 16.149 0 1 203800 + 12878 26429 8155 8161 15947 15947 0.03099604283329427 HVDTYLNKHL 10 Unmodified _HVDTYLNKHL_ 0 0 0 REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense REV__L1MB8_dup687|chr1:173984795-173985517:-|1.8437393984984585|0.0634908060864342|4.86|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 620.3258666992188 2 620.327662 1238.64077 0.43614 0.00027055 -0.23011 -0.00014275 0.20602 0.0001278 620.3274601177014 53.781 0.70441 57.364 57.029 57.734 3.5836 90 51 2 0 0 0 0.44401 6 11180 11171;11180;11211;11220;11259;11304 16.149 0 1 243040 + 12879 26429 8155 8161 15948;15949;15950;15951;15952;15953 15949 0.03099604283329427 HVDVQFERP 9 Unmodified _HVDVQFERP_ 0 0 0 REV__L1ME1_dup25518|chr15:28677141-28678520:+|1.8132052309815243|0.4225269182107788|2.1|151.0|35|2|sense REV__L1ME1_dup25518|chr15:28677141-28678520:+|1.8132052309815243|0.4225269182107788|2.1|151.0|35|2|sense MSMS UPN47_class_I_Rep_2 3 563.7850341796875 2 563.78563 1125.55671 NaN NaN NaN NaN NaN NaN NaN 44.022 1 47.38 46.88 47.88 3.358 0 0 0 0.3967 1 9139 9139 1.4819 0 1 + 12880 27702 8156 8162 15954 15954 -0.0010492681358300615 HVDVQFERP 9 Unmodified _HVDVQFERP_ 0 0 0 REV__L1ME1_dup25518|chr15:28677141-28678520:+|1.8132052309815243|0.4225269182107788|2.1|151.0|35|2|sense REV__L1ME1_dup25518|chr15:28677141-28678520:+|1.8132052309815243|0.4225269182107788|2.1|151.0|35|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 563.8218994140625 2 563.78563 1125.55671 0.44109 0.00024868 -0.13693 -7.72E-05 0.30416 0.00017148 563.7854863367232 44.297 0.16391 47.811 47.684 47.848 3.5132 13 10 2 0 0 0 0.11021 1 8408 8408 14.838 0 1 103810 + 12881 27702 8156 8162 15955 15955 -0.0010492681358300615 HVDVQFERP 9 Unmodified _HVDVQFERP_ 0 0 0 REV__L1ME1_dup25518|chr15:28677141-28678520:+|1.8132052309815243|0.4225269182107788|2.1|151.0|35|2|sense REV__L1ME1_dup25518|chr15:28677141-28678520:+|1.8132052309815243|0.4225269182107788|2.1|151.0|35|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 563.82177734375 2 563.78563 1125.55671 0.35202 0.00019846 -0.23161 -0.00013058 0.12041 6.7885E-05 563.7856766167927 44.097 0.16413 47.735 47.645 47.809 3.6385 17 10 2 0 0 0 0.10301 1 8298 8298 18.146 0 1 50182 + 12882 27702 8156 8162 15956 15956 -0.0010492681358300615 HVEELETFTF 10 Unmodified _HVEELETFTF_ 0 0 0 REV__ENSG00000188306|ENST00000340806|LRRIQ4 REV__ENSG00000188306|ENST00000340806|LRRIQ4 MULTI-MSMS UPN47_class_I_Rep_3 4 626.29736328125 2 626.298236 1250.58192 -0.03744 -2.3448E-05 -0.10935 -6.8484E-05 -0.14679 -9.1932E-05 626.2979082172532 39.261 0.53938 42.499 42.285 42.824 3.238 46 36 2 0 0 0 0.56309 1 7691 7691 1.6526 0 1 79449 + 12883 20961 8157 8163 15957 15957 -0.03334916801645704 HVELVNKHR 9 Unmodified _HVELVNKHR_ 0 0 0 REV__L1MB5_dup4326|chrX:1523504-1523674:+|1.03194360799682|0.0063821898898084|7.34|151.0|1|1|sense REV__L1MB5_dup4326|chrX:1523504-1523674:+|1.03194360799682|0.0063821898898084|7.34|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 566.3209228515625 2 566.322714 1130.63087 NaN NaN NaN NaN NaN NaN NaN 44.195 1 47.957 47.457 48.457 3.7617 0 0 0 0.39598 1 8396 8396 1.6526 0.85899 1 + 12884 26068 8158 8164 15958 15958 0.07078461068613251 HVEYEWRL 8 Unmodified _HVEYEWRL_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS UPN46_class_I_Rep_3 1 566.280517578125 2 566.282723 1130.55089 -0.010834 -6.1349E-06 -1.522 -0.00086187 -1.5328 -0.00086801 566.7840610308781 20.537 0.29902 20.537 20.346 20.646 0 37 28 2 0 0 0 0.82752 1 2160 2160 2.5775 0.51773 1 48565 12885 3599 8159 8165 15959 15959 -0.009160253252503026 HVEYEWRL 8 Unmodified _HVEYEWRL_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MSMS UPN47_class_I_Rep_1 2 566.2809448242188 2 566.282723 1130.55089 NaN NaN NaN NaN NaN NaN NaN 19.418 1 23.03 22.53 23.53 3.6118 0 0 0 0.40746 1 1782 1782 0.69038 0 1 12886 3599 8159 8165 15960 15960 -0.009160253252503026 HVEYEWRL 8 Unmodified _HVEYEWRL_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MSMS UPN47_class_I_Rep_1 2 566.2809448242188 2 566.282723 1130.55089 NaN NaN NaN NaN NaN NaN NaN 22.806 1 26.51 26.01 27.01 3.7042 0 0 0 0.40746 1 2713 2713 0.69038 0 1 12887 3599 8159 8165 15961 15961 -0.009160253252503026 HVEYEWRL 8 Unmodified _HVEYEWRL_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS UPN48_class_I_Rep_2 6 566.2822875976562 2 566.282723 1130.55089 0.43078 0.00024394 -0.052262 -2.9595E-05 0.37852 0.00021435 566.2824589685572 49.517 1.2618 53.211 52.474 53.735 3.6946 200 81 3 0 0 0 0.82752 1 9869 9869 3.9444 0 1 489200 12888 3599 8159 8165 15962 15962 -0.009160253252503026 HVFFLKDW 8 Unmodified _HVFFLKDW_ 0 0 0 REV__L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|123|1|anti-sense REV__L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|123|1|anti-sense MSMS UPN48_class_I_Rep_1 5 546.2857666015625 2 546.287277 1090.56 NaN NaN NaN NaN NaN NaN NaN 36.565 1 40.072 39.572 40.572 3.507 0 0 0 0.40738 1 6118 6118 0.79363 0 1 + 12889 30739 8160 8166 15963 15963 0.01834368031086342 HVFHMLMY 8 Unmodified _HVFHMLMY_ 0 0 0 REV__L1MC5a_dup3461|chr3:122748573-122749614:+|2.281430100853862|0.277395638135487|3.04|151.0|35|3|sense REV__L1MC5a_dup3461|chr3:122748573-122749614:+|2.281430100853862|0.277395638135487|3.04|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 539.2454223632812 2 539.254065 1076.49358 NaN NaN NaN NaN NaN NaN NaN 28.431 1 31.93 31.43 32.43 3.4986 0 0 0 0.40581 1 4410 4410 2.8892 0.31174 1 + 12890 27153 8161 8167 15964 15964 -0.04160907126811253 HVFHVRYR 8 Unmodified _HVFHVRYR_ 0 0 0 REV__ENST00000531140.1_1_11:121174081-121177378:+|nuORF REV__ENST00000531140.1_1_11:121174081-121177378:+|nuORF MSMS UPN48_class_I_Rep_1 5 557.30712890625 2 557.306867 1112.59918 NaN NaN NaN NaN NaN NaN NaN 26.568 1 30.135 29.635 30.635 3.5667 0 0 0 0.40746 1 3283 3283 0.69038 0 1 + 12891 22852 8162 8168 15965 15965 0.04738513105303355 HVFLLALWPV 10 Unmodified _HVFLLALWPV_ 0 0 0 HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|40|1|anti-sense HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|40|1|anti-sense HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|40|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.3574829101562 2 597.855327 1193.6961 0.57537 0.00034399 1.199 0.00071685 1.7744 0.0010608 597.8556823949074 87.132 0.35141 87.132 87.028 87.379 0 32 26 2 0 0 0 0.56281 1 20890 20890 1.8442 0.36234 1 235180 12892 7832 8163 8169 15966 15966 0.1070006254171858 HVFNEIDVDF 10 Unmodified _HVFNEIDVDF_ 0 0 0 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 MSMS UPN48_class_I_Rep_1 5 617.7899780273438 2 617.790578 1233.5666 NaN NaN NaN NaN NaN NaN NaN 62.289 1 65.751 65.251 66.251 3.4625 0 0 0 0.53105 1 13927 13927 7.609 0 1 + 12893 20121 8164 8170 15967 15967 -0.0408378359886683 HVFNEIDVDF 10 Unmodified _HVFNEIDVDF_ 0 0 0 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 MSMS UPN48_class_I_Rep_1 5 617.7900390625 2 617.790578 1233.5666 NaN NaN NaN NaN NaN NaN NaN 62.498 1 65.961 65.461 66.461 3.4625 0 0 0 0.53105 1 13992 13992 2.4985 0 1 + 12894 20121 8164 8170 15968 15968 -0.0408378359886683 HVFNEIDVDF 10 Unmodified _HVFNEIDVDF_ 0 0 0 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 MULTI-MSMS UPN48_class_I_Rep_2 6 618.291748046875 2 617.790578 1233.5666 0.5435 0.00033577 -0.75352 -0.00046552 -0.21001 -0.00012974 617.7901781413146 62.23 0.55144 65.704 65.5 66.052 3.4738 54 42 2 0 0 0 0.53414 2 13921 13888;13921 7.609 1.4032 1 139790 + 12895 20121 8164 8170 15969;15970 15970 -0.0408378359886683 HVFNEIDVDF 10 Unmodified _HVFNEIDVDF_ 0 0 0 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 MSMS UPN48_class_I_Rep_2 6 617.7906494140625 2 617.790578 1233.5666 NaN NaN NaN NaN NaN NaN NaN 62.019 1 65.493 64.993 65.993 3.4738 0 0 0 0.53105 1 13824 13824 4.897 0 1 + 12896 20121 8164 8170 15971 15971 -0.0408378359886683 HVFNEIDVDF 10 Unmodified _HVFNEIDVDF_ 0 0 0 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 MSMS UPN48_class_I_Rep_2 6 617.3115844726562 2 617.790578 1233.5666 NaN NaN NaN NaN NaN NaN NaN 62.106 1 65.58 65.08 66.08 3.4738 0 0 0 0.53105 1 13851 13851 4.5289 0 1 + 12897 20121 8164 8170 15972 15972 -0.0408378359886683 HVFNEIDVDF 10 Unmodified _HVFNEIDVDF_ 0 0 0 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2 MULTI-MSMS UPN48_class_I_Rep_3 7 617.7919311523438 2 617.790578 1233.5666 0.58583 0.00036192 -0.4078 -0.00025193 0.17804 0.00010999 617.7904471745645 62.04 0.48674 65.55 65.264 65.751 3.5104 61 42 2 0 0 0 0.54148 6 13756 13706;13721;13756;13767;13808;13817 6.6304 2.686 1 99960 + 12898 20121 8164 8170 15973;15974;15975;15976;15977;15978 15975 -0.0408378359886683 HVFQIPEE 8 Unmodified _HVFQIPEE_ 0 0 0 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 MULTI-MSMS UPN47_class_I_Rep_3 4 500.25225830078125 2 499.750724 997.486896 0.17658 8.8247E-05 -1.0602 -0.00052985 -0.88365 -0.0004416 499.7509134628632 56.718 0.55026 59.89 59.498 60.048 3.1721 44 32 2 0 0 0 0.82752 1 12976 12976 1.8442 1.0506 1 98902 12899 4954 8165 8171 15979 15979 -0.011948054821914411 HVFRKKNRR 9 Unmodified _HVFRKKNRR_ 0 0 0 nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13 nc|ENSG00000010379|Q9NSD5-2|SLC6A13 nc|ENSG00000010379|Q9NSD5-2|SLC6A13 MSMS UPN46_class_I_Rep_3 1 620.881103515625 2 620.878522 1239.74249 NaN NaN NaN NaN NaN NaN NaN 72.158 1 72.158 71.658 72.658 0 0 0 0 0.39428 1 16664 16664 2.0598 0.40713 1 12900 758 8166 8172 15980 15980 0.13220940216410781 HVFSKCQHD 9 Unmodified _HVFSKCQHD_ 0 0 0 REV__L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|102|1|anti-sense REV__L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|102|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7483520507812 2 550.750733 1099.48691 NaN NaN NaN NaN NaN NaN NaN 66.687 1 66.687 66.187 67.187 0 0 0 0 0.39518 1 15144 15144 1.8442 0.19162 1 + 12901 25589 8167 8173 15981 15981 -0.05885128753834579 HVFVSHHT 8 Unmodified _HVFVSHHT_ 0 0 0 REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|333|3|anti-sense REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|333|3|anti-sense MSMS UPN47_class_I_Rep_1 2 482.7247314453125 2 482.243401 962.472249 NaN NaN NaN NaN NaN NaN NaN 118.65 1 122.25 121.75 122.75 3.6036 0 0 0 0.40738 1 29450 29450 0.79363 0 1 + 12902 30304 8168 8174 15982 15982 -0.010488328396718316 HVFYGLECYL 10 Unmodified _HVFYGLECYL_ 0 0 0 L1MCa_dup3492|chr8:47333906-47335437:-|1.584326415201576|0.014657962445322|6.76|150.0|83|2|anti-sense L1MCa_dup3492|chr8:47333906-47335437:-|1.584326415201576|0.014657962445322|6.76|150.0|83|2|anti-sense L1MCa_dup3492|chr8:47333906-47335437:-|1.584326415201576|0.014657962445322|6.76|150.0|83|2|anti-sense MSMS UPN48_class_I_Rep_2 6 622.2920532226562 2 622.294442 1242.57433 NaN NaN NaN NaN NaN NaN NaN 47.784 1 51.52 51.02 52.02 3.7361 0 0 0 0.53105 1 9476 9476 1.6526 0.32309 1 12903 11798 8169 8175 15983 15983 -0.037253476029263766 HVGADTRSSIT 11 Unmodified _HVGADTRSSIT_ 0 0 0 REV__ENST00000463758.1_1_1:1244346-1244654:+|nuORF REV__ENST00000463758.1_1_1:1244346-1244654:+|nuORF MSMS UPN48_class_I_Rep_3 7 572.30419921875 2 572.291276 1142.568 NaN NaN NaN NaN NaN NaN NaN 31.011 1 34.726 34.226 35.226 3.7146 0 0 0 0.38417 1 4536 4536 3.2813 0.97858 1 + 12904 20341 8170 8176 15984 15984 0.0024185048989693314 HVGMMRMY 8 Unmodified _HVGMMRMY_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13 REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13 MSMS UPN46_class_I_Rep_3 1 512.28173828125 2 512.7299 1023.44525 NaN NaN NaN NaN NaN NaN NaN 80.269 1 80.269 79.769 80.769 0 0 0 0 0.40604 1 18901 18901 2.5775 0.27475 1 + 12905 20689 8171 8177 15985 15985 -0.06553724038371911 HVGMRKPR 8 Unmodified _HVGMRKPR_ 0 0 0 REV__TJAP1|p.S531R|1|0.4|ENSG00000137221|chr6:43505774-43505774|C/A|missense_variant REV__TJAP1|p.S531R|1|0.4|ENSG00000137221|chr6:43505774-43505774|C/A|missense_variant MSMS UPN47_class_I_Rep_3 4 490.7508850097656 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 25.916 1 29.264 28.764 29.764 3.3478 0 0 0 0.40738 1 3716 3716 0.79363 0 1 + 12906 32817 8172 8178 15986 15986 0.059194818248670344 HVGMRKPR 8 Unmodified _HVGMRKPR_ 0 0 0 REV__TJAP1|p.S531R|1|0.4|ENSG00000137221|chr6:43505774-43505774|C/A|missense_variant REV__TJAP1|p.S531R|1|0.4|ENSG00000137221|chr6:43505774-43505774|C/A|missense_variant MSMS UPN47_class_I_Rep_3 4 490.7526550292969 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 26.184 1 29.532 29.032 30.032 3.3478 0 0 0 0.40738 1 3792 3792 0.79363 0 1 + 12907 32817 8172 8178 15987 15987 0.059194818248670344 HVGMRKPR 8 Unmodified _HVGMRKPR_ 0 0 0 REV__TJAP1|p.S531R|1|0.4|ENSG00000137221|chr6:43505774-43505774|C/A|missense_variant REV__TJAP1|p.S531R|1|0.4|ENSG00000137221|chr6:43505774-43505774|C/A|missense_variant MSMS UPN48_class_I_Rep_1 5 490.7821350097656 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 24.974 1 28.541 28.041 29.041 3.5667 0 0 0 0.40738 1 2838 2838 0.79363 0 1 + 12908 32817 8172 8178 15988 15988 0.059194818248670344 HVGQHALARQ 10 Unmodified _HVGQHALARQ_ 0 0 0 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 MSMS UPN47_class_I_Rep_1 2 558.80419921875 2 558.804688 1115.59482 NaN NaN NaN NaN NaN NaN NaN 24.809 1 28.559 28.059 29.059 3.7495 0 0 0 0.53105 1 3306 3306 1.4819 0.68827 1 12909 4425 8173 8179 15989 15989 0.04165003891739616 HVHFLTPLP 9 Unmodified _HVHFLTPLP_ 0 0 0 nc|ENSG00000119715|O95718-2|ESRRB nc|ENSG00000119715|O95718-2|ESRRB nc|ENSG00000119715|O95718-2|ESRRB MSMS UPN47_class_I_Rep_3 4 530.8016967773438 2 530.800552 1059.58655 NaN NaN NaN NaN NaN NaN NaN 81.894 1 85.217 84.717 85.717 3.3231 0 0 0 0.34056 1 20513 20513 8.5933 0.68312 1 12910 16671 8174 8180 15990 15990 0.059140569224155115 HVHHHVHRHHH 11 Unmodified _HVHHHVHRHHH_ 0 0 0 REV__ENSG00000103126.15,AXIN1,chr16,-,I5.1,298252,304303|26|7.32|4|intron REV__ENSG00000103126.15,AXIN1,chr16,-,I5.1,298252,304303|26|7.32|4|intron MSMS UPN48_class_I_Rep_2 6 490.5810852050781 3 490.580543 1468.7198 NaN NaN NaN NaN NaN NaN NaN 38.479 1 42.195 41.695 42.695 3.7164 0 0 0 0.38417 1 6712 6712 0.50596 0 1 + 12911 18215 8175 8181 15991 15991 0.004187338714928046 HVHLQSKKI 9 Unmodified _HVHLQSKKI_ 0 0 0 REV__ENSG00000127081|ENST00000375495|ZNF484 REV__ENSG00000127081|ENST00000375495|ZNF484 MSMS UPN47_class_I_Rep_1 2 545.7556762695312 2 545.330008 1088.64546 NaN NaN NaN NaN NaN NaN NaN 43.337 1 47.025 46.525 47.525 3.6875 0 0 0 0.39518 1 8901 8901 1.8442 0.36234 1 + 12912 18870 8176 8182 15992 15992 0.10468533216749165 HVHSEFESF 9 Unmodified _HVHSEFESF_ 0 0 0 nc|ENSG00000066336|P17947-2|SPI1;ENSG00000066336|ENST00000378538|SPI1 nc|ENSG00000066336|P17947-2|SPI1 nc|ENSG00000066336|P17947-2|SPI1 MSMS UPN46_class_I_Rep_3 1 559.7489013671875 2 559.748713 1117.48287 NaN NaN NaN NaN NaN NaN NaN 40.383 1 40.383 39.883 40.883 0 0 0 0 0.089203 1 7834 7834 26.884 9.9414 1 12913 1020 8177 8183 15993 15993 -0.07116894975888499 HVHSEFESF 9 Unmodified _HVHSEFESF_ 0 0 0 nc|ENSG00000066336|P17947-2|SPI1;ENSG00000066336|ENST00000378538|SPI1 nc|ENSG00000066336|P17947-2|SPI1 nc|ENSG00000066336|P17947-2|SPI1 MSMS UPN46_class_I_Rep_3 1 559.749755859375 2 559.748713 1117.48287 NaN NaN NaN NaN NaN NaN NaN 40.504 1 40.504 40.004 41.004 0 0 0 0 0.089203 1 7865 7865 26.884 3.7352 1 12914 1020 8177 8183 15994 15994 -0.07116894975888499 HVILDYNLK 9 Unmodified _HVILDYNLK_ 0 0 0 L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|12|1|sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|12|1|sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 557.8170776367188 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 47.4 1 50.641 50.141 51.141 3.2405 0 0 0 0.38784 1 10226 10226 3.5965 0 1 12915 11292 8178 8184 15995 15995 0.06598004885677256 HVKHPRLLTF 10 Unmodified _HVKHPRLLTF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS UPN48_class_I_Rep_1 5 624.8738403320312 2 624.372207 1246.72986 0.42935 0.00026807 -0.29917 -0.0001868 0.13017 8.1276E-05 624.3718557159842 91.443 0.83469 95.069 94.657 95.492 3.626 225 118 2 0 0 0 0.56078 1 21907 21907 3.2813 3.2813 1 12353000 12916 3163 8179 8185 15996 15996 0.11636484033510897 HVKIHVLE 8 Unmodified _HVKIHVLE_ 0 0 0 L1ME3G_dup8908|chr9:131408305-131408489:+|1.5878632855078605|0.0155136043121646|6.68|151.0|4|3|sense L1ME3G_dup8908|chr9:131408305-131408489:+|1.5878632855078605|0.0155136043121646|6.68|151.0|4|3|sense L1ME3G_dup8908|chr9:131408305-131408489:+|1.5878632855078605|0.0155136043121646|6.68|151.0|4|3|sense MSMS UPN48_class_I_Rep_3 7 487.7905578613281 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 72.871 1 76.408 75.908 76.908 3.5373 0 0 0 0.40625 1 17016 17016 2.3027 0 1 12917 12850 8180 8186 15997 15997 0.0830577040536582 HVKLNHPRIR 10 Unmodified _HVKLNHPRIR_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MSMS UPN47_class_I_Rep_1 2 635.25830078125 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 70.624 1 73.996 73.496 74.496 3.3713 0 0 0 0.53105 1 17172 17172 0.40072 0 1 + 12918 19105 8181 8187 15998 15998 0.1341780701359312 HVKRSVPFVK 10 Unmodified _HVKRSVPFVK_ 0 0 0 REV__ENST00000578001.1_1_17:27182052-27185217:+|nuORF REV__ENST00000578001.1_1_17:27182052-27185217:+|nuORF MSMS UPN48_class_I_Rep_2 6 598.8665161132812 2 598.866757 1195.71896 NaN NaN NaN NaN NaN NaN NaN 54.414 1 57.996 57.496 58.496 3.5817 0 0 0 0.53105 1 11499 11499 1.6526 0 1 + 12919 19026 8182 8188 15999 15999 0.12893081659217387 HVLAAILFVY 10 Unmodified _HVLAAILFVY_ 0 0 0 REV__ENSG00000091664|ENST00000263160|SLC17A6 REV__ENSG00000091664|ENST00000263160|SLC17A6 MSMS UPN47_class_I_Rep_2 3 573.2864379882812 2 573.33951 1144.66447 NaN NaN NaN NaN NaN NaN NaN 61.558 1 64.817 64.317 65.317 3.2594 0 0 0 0.53105 1 14479 14479 1.8442 1.0506 1 + 12920 18026 8183 8189 16000 16000 0.09792069787818036 HVLALTML 8 Unmodified _HVLALTML_ 0 0 0 ENST00000462391.5_1_10:103541605-103543114:-|nuORF;ENSG00000107833|ENST00000370110|NPM3 ENST00000462391.5_1_10:103541605-103543114:-|nuORF ENST00000462391.5_1_10:103541605-103543114:-|nuORF MSMS UPN48_class_I_Rep_3 7 449.266845703125 2 449.264956 896.515359 NaN NaN NaN NaN NaN NaN NaN 81.022 1 84.686 84.186 85.186 3.6635 0 0 0 0.40404 1 19177 19177 5.2307 2.6532 1 12921 1835 8184 8190 16001 16001 0.06296220893375448 HVLERFILNK 10 Unmodified _HVLERFILNK_ 0 0 0 MER4E_dup187|chr5:76893930-76894483:+|3.321150018743863|0.0209953888164832|7.31|150.0|27|2|anti-sense MER4E_dup187|chr5:76893930-76894483:+|3.321150018743863|0.0209953888164832|7.31|150.0|27|2|anti-sense MER4E_dup187|chr5:76893930-76894483:+|3.321150018743863|0.0209953888164832|7.31|150.0|27|2|anti-sense MSMS UPN47_class_I_Rep_1 2 634.8773803710938 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 107.04 1 110.72 110.22 111.22 3.6724 0 0 0 0.53105 1 26226 26226 1.4819 0 1 12922 16039 8185 8191 16002 16002 0.11693046968093768 HVLGFLAR 8 Unmodified _HVLGFLAR_ 0 0 0 nc|ENSG00000145555|Q9HD67-3|MYO10;ENSG00000145555|ENST00000513610|MYO10 nc|ENSG00000145555|Q9HD67-3|MYO10 nc|ENSG00000145555|Q9HD67-3|MYO10 MSMS UPN47_class_I_Rep_1 2 456.7719421386719 2 456.774337 911.534121 NaN NaN NaN NaN NaN NaN NaN 17.877 1 21.427 20.927 21.927 3.5504 0 0 0 0.40738 1 1404 1404 0.79363 0 1 12923 3400 8186 8192 16003 16003 0.07481518579459134 HVLGFLAR 8 Unmodified _HVLGFLAR_ 0 0 0 nc|ENSG00000145555|Q9HD67-3|MYO10;ENSG00000145555|ENST00000513610|MYO10 nc|ENSG00000145555|Q9HD67-3|MYO10 nc|ENSG00000145555|Q9HD67-3|MYO10 MSMS UPN47_class_I_Rep_3 4 456.7725830078125 2 456.774337 911.534121 NaN NaN NaN NaN NaN NaN NaN 18.202 1 21.557 21.057 22.057 3.3545 0 0 0 0.40738 1 1470 1470 0.79363 0 1 12924 3400 8186 8192 16004 16004 0.07481518579459134 HVLGHFSYF 9 Unmodified _HVLGHFSYF_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MSMS UPN48_class_I_Rep_1 5 553.775146484375 2 553.774534 1105.53451 NaN NaN NaN NaN NaN NaN NaN 75.018 1 78.508 78.008 79.008 3.49 0 0 0 0.34056 1 17754 17754 8.5933 0 1 + 12925 18397 8187 8193 16005 16005 -0.01403106491352446 HVLLDSVCQD 10 Unmodified _HVLLDSVCQD_ 0 0 0 L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|130|2|anti-sense L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|130|2|anti-sense L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|130|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.7697143554688 2 564.771331 1127.52811 0.54082 0.00030544 -2.4045 -0.001358 -1.8637 -0.0010525 564.7694303270928 51.075 0.24405 54.291 54.226 54.47 3.2163 13 11 2 0 0 0 0.56078 1 11350 11350 3.2813 1.4371 1 28712 12926 13779 8188 8194 16006 16006 -0.03055412505023014 HVLMKRICILQ 11 Unmodified _HVLMKRICILQ_ 0 0 0 L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|152|2|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|152|2|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|152|2|anti-sense MSMS UPN48_class_I_Rep_1 5 451.9320983886719 3 451.933432 1352.77847 NaN NaN NaN NaN NaN NaN NaN 89.848 1 93.474 92.974 93.974 3.6255 0 0 0 0.38417 1 21590 21590 0.45452 0 1 12927 9701 8189 8195 16007 16007 0.11618893286731691 HVLMTINWN 9 Unmodified _HVLMTINWN_ 0 0 0 REV__MER58A_dup4487|chr5:169898641-169898856:-|1.041122468206072|0.0028745745296014|8.5|151.0|2|1|sense REV__MER58A_dup4487|chr5:169898641-169898856:-|1.041122468206072|0.0028745745296014|8.5|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 564.286376953125 2 564.286951 1126.55935 NaN NaN NaN NaN NaN NaN NaN 43.893 1 47.588 47.088 48.088 3.6951 0 0 0 0.39428 1 9072 9072 2.0598 0.21551 1 + 12928 31461 8190 8196 16008 16008 0.0011320531971250603 HVLVRLRRNW 10 Unmodified _HVLVRLRRNW_ 0 0 0 L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|16|1|sense L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|16|1|sense L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 450.2738037109375 3 450.273945 1347.80001 NaN NaN NaN NaN NaN NaN NaN 118.17 1 121.83 121.33 122.33 3.6627 0 0 0 0.53105 1 28327 28327 0.15932 0.064481 1 12929 10171 8191 8197 16009 16009 0.14001782421973985 HVLYRLKFHL 10 Unmodified _HVLYRLKFHL_ 0 0 0 REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 442.5990295410156 3 442.599547 1324.77681 0.10128 4.4828E-05 0.10962 4.8519E-05 0.21091 9.3347E-05 442.5995157773522 52.054 0.43807 52.054 51.838 52.276 0 79 50 2 0 0 0 0.56444 1 11093 11093 0.69767 0.1345 1 157440 + 12930 29897 8192 8198 16010 16010 0.1274134358466199 HVLYRLKFHL 10 Unmodified _HVLYRLKFHL_ 0 0 0 REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 442.5992736816406 3 442.599547 1324.77681 -0.027608 -1.2219E-05 0.31977 0.00014153 0.29217 0.00012931 442.5995362295794 47.095 1.7122 50.614 49.754 51.466 3.5192 337 121 4 0 0 0 0.56433 1 9464 9464 0.77653 0.77653 1 522740 + 12931 29897 8192 8198 16011 16011 0.1274134358466199 HVLYRLKFHL 10 Unmodified _HVLYRLKFHL_ 0 0 0 REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 442.5995178222656 3 442.599547 1324.77681 0.035222 1.5589E-05 0.28889 0.00012786 0.32412 0.00014345 442.59952147492197 46.829 1.5896 50.578 49.724 51.313 3.7494 282 122 4 0 0 0 0.56444 2 9131 9131;9219 0.69767 0.69767 1 546350 + 12932 29897 8192 8198 16012;16013 16012 0.1274134358466199 HVLYRLKFHL 10 Unmodified _HVLYRLKFHL_ 0 0 0 REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense REV__L1PA6_dup4169|chr10:58229728-58235826:+|1.284802133161412|0.0379203468281385|5.08|150.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 442.59954833984375 3 442.599547 1324.77681 0.073821 3.2673E-05 0.12873 5.6977E-05 0.20255 8.965E-05 442.5994862427591 46.968 1.5935 50.605 49.737 51.33 3.6363 255 114 3 0 0 0 0.56444 1 9288 9288 0.69767 0.69767 1 495500 + 12933 29897 8192 8198 16014 16014 0.1274134358466199 HVMKKDLR 8 Unmodified _HVMKKDLR_ 0 0 0 REV__L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|91|2|sense REV__L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|91|2|sense MSMS UPN47_class_I_Rep_1 2 513.7967529296875 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 68.188 1 71.552 71.052 72.052 3.3646 0 0 0 0.40746 1 16444 16444 0.69038 0.088878 1 + 12934 30684 8193 8199 16015 16015 0.06865215419225024 HVMLFKGM 8 Unmodified _HVMLFKGM_ 0 0 0 REV__HAL1ME_dup6303|chr12:50538417-50538989:-|1.7045235669132883|0.0086848809121763|7.62|151.0|7|1|sense REV__HAL1ME_dup6303|chr12:50538417-50538989:-|1.7045235669132883|0.0086848809121763|7.62|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 481.7872009277344 2 481.751159 961.487764 NaN NaN NaN NaN NaN NaN NaN 114.56 1 118.07 117.57 118.57 3.5039 0 0 0 0.40738 1 27902 27902 0.79363 0.10326 1 + 12935 23499 8194 8200 16016 16016 0.00547994361511428 HVNEFYRN 8 Unmodified _HVNEFYRN_ 0 0 0 REV__L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|15|2|sense REV__L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|15|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 539.7562866210938 2 539.756872 1077.49919 -0.15274 -8.2442E-05 -0.77461 -0.0004181 -0.92735 -0.00050054 539.7563668771576 18.572 0.21316 18.572 18.436 18.649 0 44 24 2 0 0 0 0.82752 1 1626 1626 0.79363 0.10326 1 58336 + 12936 25780 8195 8201 16017 16017 -0.036457690191582515 HVNKLESI 8 Unmodified _HVNKLESI_ 0 0 0 REV__BLACKJACK_dup367|chr3:71552829-71554065:-|2.212396267234728|0.0643723316789026|5.1|151.0|73|2|anti-sense REV__BLACKJACK_dup367|chr3:71552829-71554065:-|2.212396267234728|0.0643723316789026|5.1|151.0|73|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 470.2663269042969 2 470.266542 938.51853 -0.36764 -0.00017289 0.11267 5.2986E-05 -0.25497 -0.0001199 470.26661309477896 23.085 0.54596 26.789 26.556 27.102 3.7042 93 50 2 0 0 0 0.82752 2 2785 2785;2818 16.942 0 1 132330 + 12937 17255 8196 8202 16018;16019 16018 0.0468118727176261 HVNKLESI 8 Unmodified _HVNKLESI_ 0 0 0 REV__BLACKJACK_dup367|chr3:71552829-71554065:-|2.212396267234728|0.0643723316789026|5.1|151.0|73|2|anti-sense REV__BLACKJACK_dup367|chr3:71552829-71554065:-|2.212396267234728|0.0643723316789026|5.1|151.0|73|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 470.266542 938.51853 -0.36764 -0.00017289 0.11267 5.2986E-05 -0.25497 -0.0001199 470.26661309477896 23.085 0.54596 26.789 26.556 27.102 3.7042 -0.11018 -6.1539E-05 NaN 16.942 93 50 2 NaN NaN NaN NaN 0 NaN NaN 0 132330 + 12938 17255 8196 8202 0.0468118727176261 HVNSLITVRR 10 Unmodified _HVNSLITVRR_ 0 0 0 MSTB_dup5868|chr11:72960013-72960387:-|2.2142798722495702|0.0231945361486965|6.58|151.0|22|2|anti-sense MSTB_dup5868|chr11:72960013-72960387:-|2.2142798722495702|0.0231945361486965|6.58|151.0|22|2|anti-sense MSTB_dup5868|chr11:72960013-72960387:-|2.2142798722495702|0.0231945361486965|6.58|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 597.8574829101562 2 597.856921 1193.69929 NaN NaN NaN NaN NaN NaN NaN 85.645 1 89.415 88.915 89.915 3.7701 0 0 0 0.53105 1 20314 20314 1.3295 0.13619 1 12939 16569 8197 8203 16020 16020 0.11018705648439209 HVPEVEVQVKR 11 Unmodified _HVPEVEVQVKR_ 0 0 0 ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF ENST00000553597.5_1_15:25166388-25213181:+|nuORF ENST00000553597.5_1_15:25166388-25213181:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 440.9200134277344 3 440.585854 1318.73573 0.13625 6.003E-05 -0.13325 -5.8708E-05 0.0030006 1.322E-06 440.58580448104277 29.772 0.39355 33.403 33.324 33.718 3.6316 68 44 2 0 0 0 0.4411 3 4257 4257;4260;4291 9.2438 4.8376 1 66466 12940 5815 8198 8204 16021;16022;16023 16021 0.08911537754488563 HVPEVEVQVKR 11 Unmodified _HVPEVEVQVKR_ 0 0 0 ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF ENST00000553597.5_1_15:25166388-25213181:+|nuORF ENST00000553597.5_1_15:25166388-25213181:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 440.5945129394531 3 440.585854 1318.73573 0.044128 1.9442E-05 -0.16535 -7.2852E-05 -0.12122 -5.341E-05 440.58581057403444 29.559 0.5067 33.287 33.146 33.653 3.7286 72 58 2 0 0 0 0.64331 1 4169 4169 3.8459 1.5932 1 76485 12941 5815 8198 8204 16024 16024 0.08911537754488563 HVPEVEVQVKR 11 Unmodified _HVPEVEVQVKR_ 0 0 0 ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF ENST00000553597.5_1_15:25166388-25213181:+|nuORF ENST00000553597.5_1_15:25166388-25213181:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 440.585854 1318.73573 0.04082 1.7985E-05 -0.062095 -2.7358E-05 -0.021275 -9.3737E-06 440.58600260375925 29.885 0.44926 33.427 33.231 33.68 3.542 0.0547 9.0034E-05 NaN 9.2438 64 46 2 NaN NaN NaN NaN 0 NaN NaN 0 90398 12942 5815 8198 8204 0.08911537754488563 HVPPHLPN 8 Unmodified _HVPPHLPN_ 0 0 0 AluSz6_dup41037|chr17:46324093-46324293:+|1.123066825965674|0.0744845490696371|3.91|148.0|13|3|anti-sense AluSz6_dup41037|chr17:46324093-46324293:+|1.123066825965674|0.0744845490696371|3.91|148.0|13|3|anti-sense AluSz6_dup41037|chr17:46324093-46324293:+|1.123066825965674|0.0744845490696371|3.91|148.0|13|3|anti-sense MSMS UPN46_class_I_Rep_3 1 455.68212890625 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 64.303 1 64.303 63.803 64.803 0 0 0 0 0.40604 1 14465 14465 2.5775 0.73324 1 12943 389 8199 8205 16025 16025 0.02372355165709905 HVPPHPANFC 10 Unmodified _HVPPHPANFC_ 0 0 0 AluSz_dup44601|chr8:55884088-55884404:-|2.7657371226887264|0.0087266595311426|8.31|151.0|23|3|anti-sense;AluSq2_dup60813|chr22:44203870-44204144:-|1.504614193806345|0.1139259973244655|3.72|151.0|17|3|anti-sense;AluJb_dup88920|chr13:40968719-40969017:-|1.1444872003917648|0.0126837715221146|6.5|151.0|16|2|anti-sense;AluSz_dup63842|chr11:75325313-75325622:-|1.597041975663644|0.0260801593778967|5.94|151.0|12|1|anti-sense;AluSx_dup12799|chr2:68790003-68790289:-|1.335707257175648|0.0249973317152613|5.74|151.0|17|2|anti-sense;AluSz_dup22001|chr4:1731641-1731933:-|1.3051852597755706|0.0933956985211091|3.8|151.0|13|1|anti-sense AluSz_dup44601|chr8:55884088-55884404:-|2.7657371226887264|0.0087266595311426|8.31|151.0|23|3|anti-sense AluSz_dup44601|chr8:55884088-55884404:-|2.7657371226887264|0.0087266595311426|8.31|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.763916015625 2 559.763643 1117.51273 NaN NaN NaN NaN NaN NaN NaN 37.133 1 40.38 39.88 40.88 3.247 0 0 0 0.53105 1 7085 7085 1.6526 0.17072 1 12944 81 8200 8206 16026 16026 -0.04132234511575916 HVPVVTEELL 10 Unmodified _HVPVVTEELL_ 0 0 0 ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3 ENST00000452157.5_1_5:56218957-56234137:-|nuORF ENST00000452157.5_1_5:56218957-56234137:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 568.3209838867188 2 568.321514 1134.62847 0.51197 0.00029096 0.041743 2.3724E-05 0.55371 0.00031469 568.3214647550869 70.041 0.54896 73.554 73.269 73.818 3.5128 51 43 2 0 0 0 0.46161 1 16125 16125 14.838 0.93222 1 138960 12945 3704 8201 8207 16027 16027 0.06654567820282864 HVQLILFLSTV 11 Unmodified _HVQLILFLSTV_ 0 0 0 REV__MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|15|1|sense REV__MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 635.3854370117188 2 635.381906 1268.74926 NaN NaN NaN NaN NaN NaN NaN 83.973 1 87.571 87.071 88.071 3.5973 0 0 0 0.38417 1 20097 20097 1.1933 0.66858 1 + 12946 31866 8202 8208 16028 16028 0.12563395533720723 HVQMRRMCI 9 Unmodified _HVQMRRMCI_ 0 0 0 L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|167|1|anti-sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|167|1|anti-sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|167|1|anti-sense MSMS UPN48_class_I_Rep_1 5 587.2942504882812 2 587.29373 1172.57291 NaN NaN NaN NaN NaN NaN NaN 55.061 1 58.57 58.07 59.07 3.5082 0 0 0 0.4007 1 11718 11718 0.52476 0 1 12947 13964 8203 8209 16029 16029 -0.006475834443108397 HVQYRRNF 8 Unmodified _HVQYRRNF_ 0 0 0 MER2_dup2999|chr5:69897376-69897675:+|1.912280406837212|0.0065750054619575|8.18|151.0|14|1|anti-sense;MER2_dup2995|chr5:69637493-69637792:-|3.986560850355175|0.036957828447144|6.75|151.0|14|1|anti-sense;MER2_dup2883|chr5:34194719-34195018:-|1.4662615980301683|0.0170660667011224|6.42|149.0|14|1|anti-sense;MER2_dup2845|chr5:21479959-21480258:+|3.061560419474848|0.0595332899899017|5.68|151.0|13|1|anti-sense MER2_dup2999|chr5:69897376-69897675:+|1.912280406837212|0.0065750054619575|8.18|151.0|14|1|anti-sense MER2_dup2999|chr5:69897376-69897675:+|1.912280406837212|0.0065750054619575|8.18|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.2931518554688 2 560.293956 1118.57336 NaN NaN NaN NaN NaN NaN NaN 42.234 1 45.473 44.973 45.973 3.2394 0 0 0 0.4044 1 8647 8647 4.756 0.81161 1 12948 15823 8204 8210 16030 16030 0.01881618863035328 HVRFIDYEY 9 Unmodified _HVRFIDYEY_ 0 0 0 nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 nc|ENSG00000143845|Q9NVF9-3|ETNK2 MSMS UPN48_class_I_Rep_1 5 621.3004760742188 2 621.301113 1240.58767 NaN NaN NaN NaN NaN NaN NaN 113.4 1 117.03 116.53 117.53 3.6314 0 0 0 0.40038 1 27547 27547 0.6015 0 1 12949 3329 8205 8211 16031 16031 -0.022997734993168706 HVRPCLYVK 9 Unmodified _HVRPCLYVK_ 0 0 0 AluJr_dup52938|chr11:77619250-77619532:+|1.0563984735042058|0.2507642863982223|2.07|151.0|6|2|sense AluJr_dup52938|chr11:77619250-77619532:+|1.0563984735042058|0.2507642863982223|2.07|151.0|6|2|sense AluJr_dup52938|chr11:77619250-77619532:+|1.0563984735042058|0.2507642863982223|2.07|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 557.8153076171875 2 557.813136 1113.61172 NaN NaN NaN NaN NaN NaN NaN 89.949 1 93.696 93.196 94.196 3.7471 0 0 0 0.39518 1 21442 21442 1.8442 0.19162 1 12950 160 8206 8212 16032 16032 0.059457884533230754 HVRRKKYF 8 Unmodified _HVRRKKYF_ 0 0 0 REV__ENSG00000260314|ENST00000569591|MRC1 REV__ENSG00000260314|ENST00000569591|MRC1 MSMS UPN47_class_I_Rep_1 2 567.7964477539062 2 567.338167 1132.66178 NaN NaN NaN NaN NaN NaN NaN 87.587 1 91.224 90.724 91.724 3.6372 0 0 0 0.40746 1 21889 21889 0.69038 0 1 + 12951 21394 8207 8213 16033 16033 0.10075659173503482 HVRRNIPAS 9 Unmodified _HVRRNIPAS_ 0 0 0 REV__L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|168|2|anti-sense REV__L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|168|2|anti-sense MSMS UPN48_class_I_Rep_1 5 525.3079833984375 2 525.301781 1048.58901 NaN NaN NaN NaN NaN NaN NaN 36.657 1 40.164 39.664 40.664 3.507 0 0 0 0.39598 1 6143 6143 1.6526 0 1 + 12952 29982 8208 8214 16034 16034 0.06665905380054937 HVRSSLTHY 9 Unmodified _HVRSSLTHY_ 0 0 0 REV__L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|237|2|anti-sense REV__L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|237|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.254638671875 2 550.285797 1098.55704 NaN NaN NaN NaN NaN NaN NaN 46.435 1 49.954 49.454 50.454 3.5192 0 0 0 0.39518 1 9065 9065 1.8442 0.19162 1 + 12953 29593 8209 8215 16035 16035 0.011704929062716474 HVRVFHLL 8 Unmodified _HVRVFHLL_ 0 0 0 L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|42|1|anti-sense L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|42|1|anti-sense L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|42|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 510.3042297363281 2 510.808711 1019.60287 0.31927 0.00016308 -2.5302 -0.0012924 -2.2109 -0.0011293 510.80597398639634 108.92 0.13155 108.92 108.83 108.96 0 10 6 2 0 0 0 0.72333 1 26668 26668 9.3474 0 1 390400 12954 10738 8210 8216 16036 16036 0.09385182879179865 HVRVVSCW 8 Unmodified _HVRVVSCW_ 0 0 0 HAL1_dup14320|chr10:13625332-13626781:+|1.5342163965984823|0.2869056326776775|2.42|151.0|11|1|sense HAL1_dup14320|chr10:13625332-13626781:+|1.5342163965984823|0.2869056326776775|2.42|151.0|11|1|sense HAL1_dup14320|chr10:13625332-13626781:+|1.5342163965984823|0.2869056326776775|2.42|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 493.257568359375 2 493.255454 984.496355 NaN NaN NaN NaN NaN NaN NaN 109.73 1 113.34 112.84 113.84 3.6046 0 0 0 0.40404 1 27077 27077 5.2307 0 1 12955 7803 8211 8217 16037 16037 0.003486843223527103 HVSSAELNY 9 Unmodified _HVSSAELNY_ 0 0 0 nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-3|PTPN22;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22 nc|ENSG00000134242|Q9Y2R2-6|PTPN22 nc|ENSG00000134242|Q9Y2R2-6|PTPN22 MULTI-MSMS UPN47_class_I_Rep_3 4 510.24273681640625 2 510.243264 1018.47197 -0.35777 -0.00018255 0.54687 0.00027904 0.18911 9.6491E-05 510.2435364245336 30.443 0.48633 33.754 33.554 34.04 3.3116 54 38 2 0 0 0 0.48643 1 5014 5014 2.0598 0 1 41705 12956 2839 8212 8218 16038 16038 -0.03652297350186018 HVSVKHRR 8 Unmodified _HVSVKHRR_ 0 0 0 REV__nc|ENSG00000119912|P14735-2|IDE REV__nc|ENSG00000119912|P14735-2|IDE MSMS UPN46_class_I_Rep_3 1 509.8041687011719 2 509.804491 1017.59443 NaN NaN NaN NaN NaN NaN NaN 78.649 1 78.649 78.149 79.149 0 0 0 0 0.40643 1 18432 18432 2.0598 0.21551 1 + 12957 18691 8213 8219 16039 16039 0.08633628962559214 HVTKEDIQMTN 11 Unmodified _HVTKEDIQMTN_ 0 0 0 L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|26|2|sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|26|2|sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|26|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 439.88604736328125 3 439.21521 1314.6238 -1.0493 -0.00046086 -1.6108 -0.00070749 -2.6601 -0.0011683 439.2144265391894 25.973 0.30547 29.321 29.19 29.495 3.3478 38 29 2 0 0 0 22.551 1 3700 3700 8.7518 4.0359 1 66399 12958 12629 8214 8220 16040 16040 -0.02092684384797394 HVTKFVYFY 9 Unmodified _HVTKFVYFY_ 0 0 0 REV__L1MC5a_dup10301|chr10:893217-894903:+|2.957421797872852|0.0565692396109738|5.71|151.0|64|3|sense REV__L1MC5a_dup10301|chr10:893217-894903:+|2.957421797872852|0.0565692396109738|5.71|151.0|64|3|sense MSMS UPN47_class_I_Rep_2 3 401.8775634765625 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 14.55 1 17.937 17.437 18.437 3.3871 0 0 0 0.40038 1 595 595 0.26902 0 1 + 12959 27104 8215 8221 16041 16041 0.01922906374034028 HVTLPVTVTF 10 Unmodified _HVTLPVTVTF_ 0 0 0 nc|ENSG00000005238|Q7L5A3-3|ATOSB;nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB nc|ENSG00000005238|Q7L5A3-3|ATOSB nc|ENSG00000005238|Q7L5A3-3|ATOSB MSMS UPN48_class_I_Rep_2 6 557.31982421875 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 98.868 1 102.64 102.14 103.14 3.7707 0 0 0 0.53105 1 23486 23486 1.6526 0 1 12960 695 8216 8222 16042 16042 0.07118889028470221 HVTLVPEVPV 10 Unmodified _HVTLVPEVPV_ 0 0 0 REV__ENSG00000100941|ENST00000216832|PNN REV__ENSG00000100941|ENST00000216832|PNN MSMS UPN47_class_I_Rep_3 4 545.3172607421875 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 80.869 1 84.178 83.678 84.678 3.309 0 0 0 0.53105 1 20228 20228 1.4819 0 1 + 12961 18137 8217 8223 16043 16043 0.08222889028479585 HVTNFTTSSPG 11 Unmodified _HVTNFTTSSPG_ 0 0 0 Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|111|3|anti-sense Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|111|3|anti-sense Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|111|3|anti-sense MSMS UPN47_class_I_Rep_2 3 574.2542114257812 2 574.272552 1146.53055 NaN NaN NaN NaN NaN NaN NaN 39.608 1 42.986 42.486 43.486 3.3785 0 0 0 0.38417 1 7798 7798 1.0715 0.27783 1 12962 33164 8218 8224 16044 16044 -0.0368524077573511 HVTRLIHI 8 Unmodified _HVTRLIHI_ 0 0 0 REV__L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|79|2|anti-sense REV__L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|79|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.30712890625 2 494.806168 987.597784 -0.35382 -0.00017507 -1.2797 -0.00063319 -1.6335 -0.00080827 494.80546340838686 33.866 0.47576 37.141 37.089 37.564 3.2748 41 32 2 0 0 0 0.82752 1 6127 6127 2.3027 0.65011 1 56487 + 12963 27332 8219 8225 16045 16045 0.10348879016555657 HVTTYKYI 8 Unmodified _HVTTYKYI_ 0 0 0 REV__L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|60|3|anti-sense REV__L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|60|3|anti-sense MSMS UPN47_class_I_Rep_3 4 512.7750854492188 2 512.776742 1023.53893 NaN NaN NaN NaN NaN NaN NaN 38.403 1 41.644 41.144 42.144 3.2414 0 0 0 0.40581 1 7472 7472 2.8892 0 1 + 12964 25586 8220 8226 16046 16046 0.028103579315711613 HVVACIKI 8 Unmodified _HVVACIKI_ 0 0 0 L1MB4_dup5605|chr10:74528480-74529532:+|1.195994774416141|0.1094416276729099|3.45|151.0|60|2|anti-sense L1MB4_dup5605|chr10:74528480-74529532:+|1.195994774416141|0.1094416276729099|3.45|151.0|60|2|anti-sense L1MB4_dup5605|chr10:74528480-74529532:+|1.195994774416141|0.1094416276729099|3.45|151.0|60|2|anti-sense MSMS UPN46_class_I_Rep_3 1 441.7879638671875 2 441.765123 881.515694 NaN NaN NaN NaN NaN NaN NaN 47.569 1 47.569 47.069 48.069 0 0 0 0 0.40738 1 9848 9848 0.79363 0 1 12965 10536 8221 8227 16047 16047 0.07019640613236788 HVVCDPGPRF 10 Unmodified _HVVCDPGPRF_ 0 0 0 ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000130538|Q8NG94|OR11H1;ENSG00000257115|ENST00000550708|OR11H12 ENSG00000130538|ENST00000643195|OR11H1 ENSG00000130538|ENST00000643195|OR11H1 MSMS UPN47_class_I_Rep_2 3 563.7758178710938 2 563.776751 1125.53895 NaN NaN NaN NaN NaN NaN NaN 19.099 1 22.489 21.989 22.989 3.3898 0 0 0 0.53105 1 1736 1736 1.4819 0.68827 1 12966 2660 8222 8228 16048 16048 -0.018799653400947136 HVVCKFFHLA 10 Unmodified _HVVCKFFHLA_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|66|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|66|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|66|1|anti-sense MSMS UPN47_class_I_Rep_1 2 600.8206787109375 2 600.820961 1199.62737 NaN NaN NaN NaN NaN NaN NaN 40.521 1 44.192 43.692 44.692 3.6719 0 0 0 0.53105 1 8044 8044 1.6526 0 1 12967 11337 8223 8229 16049 16049 0.03554074970384136 HVVCKHGQFD 10 Unmodified _HVVCKHGQFD_ 0 0 0 L1HS_dup1462|chr16:54042097-54048145:+|2.416431049784204|0.4451227716780219|2.44|151.0|262|2|anti-sense L1HS_dup1462|chr16:54042097-54048145:+|2.416431049784204|0.4451227716780219|2.44|151.0|262|2|anti-sense L1HS_dup1462|chr16:54042097-54048145:+|2.416431049784204|0.4451227716780219|2.44|151.0|262|2|anti-sense MSMS UPN48_class_I_Rep_1 5 585.280517578125 2 585.279657 1168.54476 NaN NaN NaN NaN NaN NaN NaN 79.599 1 83.147 82.647 83.647 3.5487 0 0 0 0.53105 1 19008 19008 1.3295 0.63916 1 12968 8475 8224 8230 16050 16050 -0.03276866828423408 HVVGAKWL 8 Unmodified _HVVGAKWL_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MSMS UPN47_class_I_Rep_1 2 455.2667541503906 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 30.175 1 33.92 33.42 34.42 3.7449 0 0 0 0.40625 1 4898 4898 2.3027 1.5091 1 12969 4038 8225 8231 16051 16051 0.06530116205192371 HVVGQIRNR 9 Unmodified _HVVGQIRNR_ 0 0 0 ENST00000539246.5_1_11:61286101-61314074:-|nuORF;ENST00000539468.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7 ENST00000539246.5_1_11:61286101-61314074:-|nuORF ENST00000539246.5_1_11:61286101-61314074:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.2588500976562 2 539.815056 1077.61556 NaN NaN NaN NaN NaN NaN NaN 39.067 1 39.067 38.567 39.567 0 0 0 0 0.39428 1 7484 7484 2.0598 1.2661 1 12970 773 8226 8232 16052 16052 0.07985594271394802 HVVQLHAVR 9 Unmodified _HVVQLHAVR_ 0 0 0 HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.8132934570312 2 529.814525 1057.6145 -0.12999 -6.8868E-05 -0.55504 -0.00029407 -0.68503 -0.00036294 529.8143180215461 23.288 0.53901 26.993 26.66 27.199 3.7042 71 49 2 0 0 0 0.48846 1 2842 2842 1.8442 1.8442 1 72915 12971 8175 8227 8233 16053 16053 0.08799379902484361 HVVQLHAVR 9 Unmodified _HVVQLHAVR_ 0 0 0 HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.315185546875 2 529.814525 1057.6145 -0.1765 -9.3514E-05 -0.82113 -0.00043505 -0.99764 -0.00052856 529.8141757233494 23.483 0.53922 26.927 26.613 27.153 3.4447 84 49 2 0 0 0 0.48846 1 3002 3002 1.8442 1.1539 1 88161 12972 8175 8227 8233 16054 16054 0.08799379902484361 HVVWMWLN 8 Unmodified _HVVWMWLN_ 0 0 0 REV__ENST00000461377.5_1_7:45109515-45113126:+|nuORF REV__ENST00000461377.5_1_7:45109515-45113126:+|nuORF MSMS UPN46_class_I_Rep_3 1 543.2067260742188 2 542.77348 1083.53241 NaN NaN NaN NaN NaN NaN NaN 69.028 1 69.028 68.528 69.528 0 0 0 0 0.40738 1 15794 15794 0.79363 0 1 + 12973 22433 8228 8234 16055 16055 -0.006018585007723232 HVWEYLLFP 9 Unmodified _HVWEYLLFP_ 0 0 0 L1MA9_dup16159|chr22:46839392-46840454:+|1.1431215907150611|0.0252898984550491|5.5|150.0|64|3|anti-sense L1MA9_dup16159|chr22:46839392-46840454:+|1.1431215907150611|0.0252898984550491|5.5|150.0|64|3|anti-sense L1MA9_dup16159|chr22:46839392-46840454:+|1.1431215907150611|0.0252898984550491|5.5|150.0|64|3|anti-sense MSMS UPN47_class_I_Rep_1 2 401.8774108886719 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 16.529 1 20.052 19.552 20.552 3.5224 0 0 0 0.39428 1 1074 1074 1.0715 0.3738 1 12974 10124 8229 8235 16056 16056 0.01922906374034028 HVWEYLLFP 9 Unmodified _HVWEYLLFP_ 0 0 0 L1MA9_dup16159|chr22:46839392-46840454:+|1.1431215907150611|0.0252898984550491|5.5|150.0|64|3|anti-sense L1MA9_dup16159|chr22:46839392-46840454:+|1.1431215907150611|0.0252898984550491|5.5|150.0|64|3|anti-sense L1MA9_dup16159|chr22:46839392-46840454:+|1.1431215907150611|0.0252898984550491|5.5|150.0|64|3|anti-sense MSMS UPN47_class_I_Rep_2 3 401.8776550292969 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 16.483 1 19.869 19.369 20.369 3.3864 0 0 0 0.40038 1 1062 1062 0.26902 0 1 12975 10124 8229 8235 16057 16057 0.01922906374034028 HVWLIFKF 8 Unmodified _HVWLIFKF_ 0 0 0 AluJr_dup11388|chr2:177241577-177241866:+|1.0872794696292167|0.1482551242696765|2.87|151.0|21|2|anti-sense AluJr_dup11388|chr2:177241577-177241866:+|1.0872794696292167|0.1482551242696765|2.87|151.0|21|2|anti-sense AluJr_dup11388|chr2:177241577-177241866:+|1.0872794696292167|0.1482551242696765|2.87|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 545.31640625 2 545.315838 1088.61712 NaN NaN NaN NaN NaN NaN NaN 78.404 1 81.939 81.439 82.439 3.5352 0 0 0 0.40738 1 18699 18699 0.79363 0 1 12976 130 8230 8236 16058 16058 0.07635835307473826 HVWLNFWVL 9 Unmodified _HVWLNFWVL_ 0 0 0 L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|120|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|120|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|120|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 405.2221374511719 3 405.222076 1212.6444 -0.70203 -0.00028448 0.84207 0.00034123 0.14004 5.6749E-05 405.22239376615266 47.903 0.88953 51.252 51.127 52.016 3.3492 79 53 2 0 0 0 0.44742 1 10309 10309 5.2969 1.1803 1 246010 12977 13927 8231 8237 16059 16059 0.04658318847850751 HVWLNFWVL 9 Unmodified _HVWLNFWVL_ 0 0 0 L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|120|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|120|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|120|3|anti-sense MSMS UPN47_class_I_Rep_3 4 405.2220458984375 3 405.222076 1212.6444 NaN NaN NaN NaN NaN NaN NaN 49.231 1 52.466 51.966 52.966 3.2345 0 0 0 0.39145 1 10774 10774 2.7352 0 1 12978 13927 8231 8237 16060 16060 0.04658318847850751 HVYFFPHRHG 10 Unmodified _HVYFFPHRHG_ 0 0 0 SVA_D_dup730|chr9:122867469-122868735:+|1.4831650679267847|0.1972161013107708|2.91|151.0|41|1|anti-sense;SVA_D_dup709|chr9:77761374-77763116:+|1.6296919285979432|0.0946266502911752|4.11|151.0|50|2|anti-sense;SVA_D_dup1451|chr22:41630493-41632184:-|1.0283277804292374|0.1814998617035134|2.5|151.0|56|2|anti-sense;SVA_D_dup1273|chr18:12873246-12875326:+|1.078564064518344|0.1444424703059115|2.9|151.0|79|3|anti-sense;SVA_D_dup161|chr2:32293074-32295072:-|2.360359399666556|0.2624658540658748|3.17|151.0|48|1|anti-sense;SVA_D_dup60|chr1:86898787-86900637:-|2.238811659747259|0.3775951572340537|2.57|151.0|50|1|anti-sense SVA_D_dup730|chr9:122867469-122868735:+|1.4831650679267847|0.1972161013107708|2.91|151.0|41|1|anti-sense SVA_D_dup730|chr9:122867469-122868735:+|1.4831650679267847|0.1972161013107708|2.91|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_3 7 432.8853759765625 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 106.79 1 110.48 109.98 110.98 3.6899 0 0 0 0.53105 1 25175 25175 0.13989 0 1 12979 32853 8232 8238 16061 16061 -0.004781192115387967 HVYVTIVDEN 10 Unmodified _HVYVTIVDEN_ 0 0 0 nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 MULTI-MSMS UPN47_class_I_Rep_1 2 594.7984619140625 2 594.798403 1187.58225 0.31124 0.00018512 -0.16997 -0.0001011 0.14127 8.4025E-05 594.7981781239274 52.574 1.2488 56.132 55.772 57.021 3.5585 206 88 4 0 0 0 0.4965 1 11684 11684 12.241 0 1 1187200 12980 1829 8233 8239 16062 16062 -0.0040349708181111055 HVYVTIVDEN 10 Unmodified _HVYVTIVDEN_ 0 0 0 nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 MULTI-MSMS UPN47_class_I_Rep_2 3 594.7982788085938 2 594.798403 1187.58225 0.51632 0.00030711 -0.36537 -0.00021732 0.15095 8.9786E-05 594.7981138840161 52.829 1.4611 56.156 55.813 57.274 3.3266 231 103 3 0 0 0 0.43106 2 11765 11765;11814 17.113 17.113 1 959540 12981 1829 8233 8239 16063;16064 16063 -0.0040349708181111055 HVYVTIVDEN 10 Unmodified _HVYVTIVDEN_ 0 0 0 nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 MULTI-MSMS UPN47_class_I_Rep_3 4 594.79833984375 2 594.798403 1187.58225 0.49669 0.00029543 -0.24566 -0.00014612 0.25104 0.00014932 594.7981315290752 52.986 1.4 56.18 55.843 57.243 3.1948 213 90 4 0 0 0 0.4965 3 11880 11880;11899;11943 12.241 0 1 849480 12982 1829 8233 8239 16065;16066;16067 16065 -0.0040349708181111055 HWALFFVL 8 Unmodified _HWALFFVL_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|117|1|anti-sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|117|1|anti-sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|117|1|anti-sense MSMS UPN47_class_I_Rep_3 4 516.7857666015625 2 516.786913 1031.55927 NaN NaN NaN NaN NaN NaN NaN 83.846 1 87.196 86.696 87.696 3.35 0 0 0 0.40581 1 21036 21036 2.8892 0.31174 1 12983 8591 8234 8240 16068 16068 0.044755733820238675 HWAPILYQ 8 Unmodified _HWAPILYQ_ 0 0 0 L1ME2_dup5763|chr7:103333505-103333951:-|1.1673106633128707|0.1316443147196748|3.15|151.0|30|3|anti-sense L1ME2_dup5763|chr7:103333505-103333951:-|1.1673106633128707|0.1316443147196748|3.15|151.0|30|3|anti-sense L1ME2_dup5763|chr7:103333505-103333951:-|1.1673106633128707|0.1316443147196748|3.15|151.0|30|3|anti-sense MSMS UPN48_class_I_Rep_3 7 514.2719116210938 2 514.271627 1026.5287 NaN NaN NaN NaN NaN NaN NaN 37.047 1 40.71 40.21 41.21 3.663 0 0 0 0.40581 1 6199 6199 2.8892 0.58649 1 12984 12509 8235 8241 16069 16069 0.01649794996978926 HWCCCRCSLH 10 Unmodified _HWCCCRCSLH_ 0 0 0 REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|1|1|sense REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 624.2357177734375 2 624.238098 1246.46164 NaN NaN NaN NaN NaN NaN NaN 116.65 1 120.11 119.61 120.61 3.4595 0 0 0 0.53105 1 28714 28714 0.45834 0.057624 1 + 12985 29366 8236 8242 16070 16070 -0.15172966143927624 HWDSFAVY 8 Unmodified _HWDSFAVY_ 0 0 0 REV__L1MC1_dup12506|chr20:24974899-24977406:+|1.250759439663505|0.186332026958253|2.75|151.0|141|3|anti-sense REV__L1MC1_dup12506|chr20:24974899-24977406:+|1.250759439663505|0.186332026958253|2.75|151.0|141|3|anti-sense MSMS UPN47_class_I_Rep_2 3 512.7295532226562 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 112.01 1 115.53 115.03 116.03 3.5226 0 0 0 0.40738 1 27283 27283 0.79363 0 1 + 12986 26520 8237 8243 16071 16071 -0.06575361170723681 HWEECLYF 8 Unmodified _HWEECLYF_ 0 0 0 REV__L1MA3_dup6460|chr11:72910850-72911744:-|2.493635292776532|0.0271026217101597|6.52|151.0|59|3|anti-sense REV__L1MA3_dup6460|chr11:72910850-72911744:-|2.493635292776532|0.0271026217101597|6.52|151.0|59|3|anti-sense MSMS UPN47_class_I_Rep_2 3 563.7382202148438 2 563.73676 1125.45897 NaN NaN NaN NaN NaN NaN NaN 19.163 1 22.557 22.057 23.057 3.3946 0 0 0 0.40604 1 1754 1754 2.5775 0 1 + 12987 25074 8238 8244 16072 16072 -0.0987445173393553 HWFAFCYY 8 Unmodified _HWFAFCYY_ 0 0 0 REV__L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense REV__L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense MSMS UPN47_class_I_Rep_1 2 568.8447875976562 2 568.736563 1135.45857 NaN NaN NaN NaN NaN NaN NaN 113.44 1 117.01 116.51 117.51 3.572 0 0 0 0.40738 1 27988 27988 0.79363 0 1 + 12988 26929 8239 8245 16073 16073 -0.10373826663135333 HWFCMFIK 8 Unmodified _HWFCMFIK_ 0 0 0 REV__L1MA8_dup2320|chr4:73205325-73206397:+|2.8928785224902427|0.0675145500838453|5.42|151.0|71|3|anti-sense REV__L1MA8_dup2320|chr4:73205325-73206397:+|2.8928785224902427|0.0675145500838453|5.42|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_2 3 556.264404296875 2 556.264433 1110.51431 NaN NaN NaN NaN NaN NaN NaN 19.613 1 23.01 22.51 23.51 3.3963 0 0 0 0.40738 1 1882 1882 0.79363 0.10326 1 + 12989 25542 8240 8246 16074 16074 -0.03652316747184159 HWFLRHWTS 9 Unmodified _HWFLRHWTS_ 0 0 0 L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|26|2|sense L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|26|2|sense L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|26|2|sense MSMS UPN48_class_I_Rep_1 5 635.3164672851562 2 635.317432 1268.62031 NaN NaN NaN NaN NaN NaN NaN 61.265 1 64.733 64.233 65.233 3.4678 0 0 0 0.40038 1 13617 13617 0.6015 0 1 12990 13120 8241 8247 16075 16075 -0.0032552158584167046 HWFPFEFY 8 Unmodified _HWFPFEFY_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.7814331054688 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 26.014 1 29.509 29.009 30.009 3.4945 0 0 0 0.40738 1 3701 3701 0.79363 0 1 + 12991 25335 8242 8248 16076 16076 -0.06617911239914065 HWFPFEFY 8 Unmodified _HWFPFEFY_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7642211914062 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 19.034 1 22.565 22.065 23.065 3.5313 0 0 0 0.40738 1 1378 1378 0.79363 0 1 + 12992 25335 8242 8248 16077 16077 -0.06617911239914065 HWFPFEFY 8 Unmodified _HWFPFEFY_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7636108398438 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 21.2 1 24.745 24.245 25.245 3.5454 0 0 0 0.40738 1 1903 1903 0.79363 0 1 + 12993 25335 8242 8248 16078 16078 -0.06617911239914065 HWFPFEFY 8 Unmodified _HWFPFEFY_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7650146484375 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 22.747 1 26.308 25.808 26.808 3.5605 0 0 0 0.40738 1 2265 2265 0.79363 0 1 + 12994 25335 8242 8248 16079 16079 -0.06617911239914065 HWFVWVTQM 9 Unmodified _HWFVWVTQM_ 0 0 0 nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF nc|ENSG00000134824|O95864-3|FADS2 nc|ENSG00000134824|O95864-3|FADS2 MSMS UPN48_class_I_Rep_2 6 617.294921875 2 617.297319 1232.58008 NaN NaN NaN NaN NaN NaN NaN 25.049 1 28.685 28.185 29.185 3.6363 0 0 0 0.40038 1 2996 2996 0.6015 0.076735 1 12995 2870 8243 8249 16080 16080 -0.026902043006202803 HWFWAFVC 8 Unmodified _HWFWAFVC_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|216|3|anti-sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|216|3|anti-sense MSMS UPN48_class_I_Rep_1 5 548.2460327148438 2 548.247098 1094.47964 NaN NaN NaN NaN NaN NaN NaN 26.929 1 30.491 29.991 30.991 3.5629 0 0 0 0.40738 1 3387 3387 0.79363 0 1 + 12996 25070 8244 8250 16081 16081 -0.0638181656361212 HWHCRCHW 8 Unmodified _HWHCRCHW_ 0 0 0 L1PA7_dup2470|chr3:114531690-114538145:+|2.5651913102235864|0.0791595561736741|5.02|151.0|253|1|anti-sense L1PA7_dup2470|chr3:114531690-114538145:+|2.5651913102235864|0.0791595561736741|5.02|151.0|253|1|anti-sense L1PA7_dup2470|chr3:114531690-114538145:+|2.5651913102235864|0.0791595561736741|5.02|151.0|253|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.676025390625 2 582.73998 1163.46541 NaN NaN NaN NaN NaN NaN NaN 116.8 1 120.29 119.79 120.79 3.4891 0 0 0 0.40738 1 28529 28529 0.79363 0 1 12997 14785 8245 8251 16082 16082 -0.10978792263563264 HWHFGFIL 8 Unmodified _HWHFGFIL_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|217|2|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|217|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 528.7745361328125 2 528.774337 1055.53412 0.31936 0.00016887 1.5968 0.00084432 1.9161 0.0010132 528.7749733506216 88.262 0.16745 91.885 91.756 91.924 3.6229 22 15 2 0 0 0 0.82752 2 21156 21156;21172 17.087 0 1 196820 + 12998 24906 8246 8252 16083;16084 16083 0.008575185794825302 HWHFGFIL 8 Unmodified _HWHFGFIL_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|217|2|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|217|2|anti-sense MSMS UPN48_class_I_Rep_1 5 528.77587890625 2 528.774337 1055.53412 NaN NaN NaN NaN NaN NaN NaN 88.072 1 91.691 91.191 92.191 3.6187 0 0 0 0.39167 1 21121 21121 11.114 0 1 + 12999 24906 8246 8252 16085 16085 0.008575185794825302 HWHFGFIL 8 Unmodified _HWHFGFIL_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|217|2|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|217|2|anti-sense MSMS UPN48_class_I_Rep_1 5 528.7755126953125 2 528.774337 1055.53412 NaN NaN NaN NaN NaN NaN NaN 90.484 1 94.11 93.61 94.61 3.626 0 0 0 0.4032 1 21747 21747 6.3541 0 1 + 13000 24906 8246 8252 16086 16086 0.008575185794825302 HWHGHWHG 8 Unmodified _HWHGHWHG_ 0 0 0 L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|51|1|sense REV__L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|51|1|sense REV__L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|51|1|sense MSMS UPN46_class_I_Rep_3 1 527.2294311523438 2 527.231159 1052.44777 NaN NaN NaN NaN NaN NaN NaN 112.12 1 112.12 111.62 112.62 0 0 0 0 0.40738 1 27674 27674 0.79363 0 1 13001 14523 8247 8253 16087 16087 -0.07636048202539314 HWKILMWV 8 Unmodified _HWKILMWV_ 0 0 0 REV__L1ME3_dup7775|chr17:527053-527267:-|1.3017668634751127|0.4984530516913479|1.38|150.0|8|3|sense REV__L1ME3_dup7775|chr17:527053-527267:-|1.3017668634751127|0.4984530516913479|1.38|150.0|8|3|sense MSMS UPN47_class_I_Rep_3 4 556.8060913085938 2 556.807322 1111.60009 NaN NaN NaN NaN NaN NaN NaN 32.489 1 35.775 35.275 36.275 3.2867 0 0 0 0.40738 1 5675 5675 0.79363 0 1 + 13002 27965 8248 8254 16088 16088 0.04875591430027271 HWLGDNTATW 10 Unmodified _HWLGDNTATW_ 0 0 0 nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM nc|ENSG00000257335|O43451-1|MGAM nc|ENSG00000257335|O43451-1|MGAM MSMS UPN47_class_I_Rep_2 3 600.7766723632812 2 600.775262 1199.53597 NaN NaN NaN NaN NaN NaN NaN 17.873 1 21.26 20.76 21.76 3.387 0 0 0 0.53105 1 1414 1414 1.3295 0.25807 1 13003 5770 8249 8255 16089 16089 -0.055815171932636076 HWLLIIWL 8 Unmodified _HWLLIIWL_ 0 0 0 REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|61|3|sense REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|61|3|sense MSMS UPN47_class_I_Rep_3 4 547.332275390625 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 90.494 1 93.892 93.392 94.392 3.3976 0 0 0 0.40738 1 22680 22680 0.79363 0.26887 1 + 13004 32156 8250 8256 16090 16090 0.10580408341570546 HWLLRCIL 8 Unmodified _HWLLRCIL_ 0 0 0 L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|178|3|anti-sense L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|178|3|anti-sense L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|178|3|anti-sense MSMS UPN48_class_I_Rep_3 7 527.3062744140625 2 527.304947 1052.59534 NaN NaN NaN NaN NaN NaN NaN 97.975 1 101.88 101.38 102.38 3.9022 0 0 0 0.40604 1 23214 23214 2.5775 0 1 13005 8653 8251 8257 16091 16091 0.07114707287246347 HWLMIVTKGLR 11 Unmodified _HWLMIVTKGLR_ 0 0 0 REV__ENSG00000186136|ENST00000334266|TAS2R42 REV__ENSG00000186136|ENST00000334266|TAS2R42 MSMS UPN47_class_I_Rep_3 4 451.93255615234375 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 91.919 1 95.322 94.822 95.822 3.4034 0 0 0 0.38417 1 22965 22965 1.4551 0 1 + 13006 20879 8252 8258 16092 16092 0.11281966504361662 HWLNFHHE 8 Unmodified _HWLNFHHE_ 0 0 0 Tigger1_dup493|chr1:116549824-116551726:-|2.5454925928551946|0.1926389390051497|3.72|151.0|117|3|anti-sense Tigger1_dup493|chr1:116549824-116551726:-|2.5454925928551946|0.1926389390051497|3.72|151.0|117|3|anti-sense Tigger1_dup493|chr1:116549824-116551726:-|2.5454925928551946|0.1926389390051497|3.72|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_3 4 560.259521484375 2 560.259582 1118.50461 NaN NaN NaN NaN NaN NaN NaN 111.71 1 115.23 114.73 115.73 3.5207 0 0 0 0.40746 1 27431 27431 0.69038 0 1 13007 33107 8253 8259 16093 16093 -0.04990045436670698 HWLPFTFR 8 Unmodified _HWLPFTFR_ 0 0 0 MSTB1_dup659|chr2:202744153-202744544:-|1.0851440250480795|0.00867959369951|6.97|151.0|15|3|sense MSTB1_dup659|chr2:202744153-202744544:-|1.0851440250480795|0.00867959369951|6.97|151.0|15|3|sense MSTB1_dup659|chr2:202744153-202744544:-|1.0851440250480795|0.00867959369951|6.97|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 552.2936401367188 2 552.292894 1102.57123 NaN NaN NaN NaN NaN NaN NaN 94.375 1 97.782 97.282 98.282 3.4068 0 0 0 0.40738 1 23492 23492 0.79363 0 1 13008 16585 8254 8260 16094 16094 0.024051901252278185 HWLQFLKLLI 10 Unmodified _HWLQFLKLLI_ 0 0 0 REV__L1MC4a_dup3977|chr6:144000952-144002204:+|1.2782981505402595|0.0235435390344177|5.76|151.0|75|2|anti-sense REV__L1MC4a_dup3977|chr6:144000952-144002204:+|1.2782981505402595|0.0235435390344177|5.76|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_2 3 437.6023864746094 3 437.604298 1309.79106 NaN NaN NaN NaN NaN NaN NaN 50.904 1 54.243 53.743 54.743 3.3386 0 0 0 0.53105 1 11230 11230 0.77653 0 1 + 13009 26992 8255 8261 16095 16095 0.14855996012920514 HWNFCFCFC 9 Unmodified _HWNFCFCFC_ 0 0 0 REV__L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|73|3|anti-sense REV__L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|73|3|anti-sense MSMS UPN46_class_I_Rep_3 1 603.7197265625 2 603.719533 1205.42451 NaN NaN NaN NaN NaN NaN NaN 117.89 1 117.89 117.39 118.39 0 0 0 0 0.4007 1 29240 29240 0.52476 0.066424 1 + 13010 24162 8256 8262 16096 16096 -0.16998314418037808 HWNKNRYQY 9 Unmodified _HWNKNRYQY_ 0 0 0 L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|8|1|sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|8|1|sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 436.87890625 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 32.32 1 36.009 35.509 36.509 3.6896 0 0 0 0.40177 1 4896 4896 0.26902 0 1 13011 14182 8257 8263 16097 16097 -0.025550307993853494 HWNRHWYPWLR 11 Unmodified _HWNRHWYPWLR_ 0 0 0 L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|39|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 550.6107177734375 3 550.944488 1649.81163 0.38716 0.00021331 0.59701 0.00032892 0.98417 0.00054222 550.9449025064378 42.349 0.47233 42.349 42.02 42.492 0 75 53 2 0 0 0 22.551 1 8388 8388 0.094841 0.094841 1 188000 13012 15033 8258 8264 16098 16098 0.012719794453005306 HWNRRWYPWLR 11 Unmodified _HWNRRWYPWLR_ 0 0 0 L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense MSMS UPN47_class_I_Rep_3 4 557.29150390625 3 557.291887 1668.85383 NaN NaN NaN NaN NaN NaN NaN 83.148 1 86.498 85.998 86.998 3.35 0 0 0 0.38417 1 20849 20849 0.094841 0.094841 1 13013 15400 8259 8265 16099 16099 0.04615954853693438 HWPFRLWA 8 Unmodified _HWPFRLWA_ 0 0 0 ENST00000285737.8_1_16:48286052-48286112:+|nuORF ENST00000285737.8_1_16:48286052-48286112:+|nuORF ENST00000285737.8_1_16:48286052-48286112:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 556.2926025390625 2 556.793061 1111.57157 0.44294 0.00024662 1.4804 0.00082427 1.9233 0.0010709 556.7941566923138 65.867 0.056763 69.375 69.347 69.403 3.5077 5 4 2 0 0 0 0.72333 1 14923 14923 0.79363 0 1 45792 13014 6041 8260 8266 16100 16100 0.020246098450797945 HWPFWQFA 8 Unmodified _HWPFWQFA_ 0 0 0 REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|288|2|anti-sense REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|288|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.7781372070312 2 559.763969 1117.51339 NaN NaN NaN NaN NaN NaN NaN 24.93 1 28.567 28.067 29.067 3.6363 0 0 0 0.40604 1 2961 2961 2.5775 0 1 + 13015 23587 8261 8267 16101 16101 -0.04067071800204758 HWPWQRIH 8 Unmodified _HWPWQRIH_ 0 0 0 L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|12|1|sense L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|12|1|sense L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 580.2979736328125 2 580.299042 1158.58353 NaN NaN NaN NaN NaN NaN NaN 49.128 1 52.362 51.862 52.862 3.2345 0 0 0 0.40738 1 10742 10742 0.79363 0.10326 1 13016 15334 8262 8268 16102 16102 0.010582265882703723 HWQWWERL 8 Unmodified _HWQWWERL_ 0 0 0 L1MEf_dup9727|chr15:44577610-44578014:+|1.5035420083578086|0.2161254456774367|2.8|151.0|12|3|sense L1MEf_dup9727|chr15:44577610-44578014:+|1.5035420083578086|0.2161254456774367|2.8|151.0|12|3|sense L1MEf_dup9727|chr15:44577610-44578014:+|1.5035420083578086|0.2161254456774367|2.8|151.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 620.8049926757812 2 620.804157 1239.59376 NaN NaN NaN NaN NaN NaN NaN 68.79 1 71.988 71.488 72.488 3.1977 0 0 0 0.40625 1 16736 16736 2.3027 0.4585 1 13017 13339 8263 8269 16103 16103 -0.016452104771587983 HWRILPNN 8 Unmodified _HWRILPNN_ 0 0 0 L1M4_dup14474|chr12:14448550-14450773:-|1.493444107060901|0.0591448067961528|4.66|150.0|1|1|sense L1M4_dup14474|chr12:14448550-14450773:-|1.493444107060901|0.0591448067961528|4.66|150.0|1|1|sense L1M4_dup14474|chr12:14448550-14450773:-|1.493444107060901|0.0591448067961528|4.66|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 525.302734375 2 525.2856 1048.55665 NaN NaN NaN NaN NaN NaN NaN 57.971 1 61.408 60.908 61.908 3.437 0 0 0 0.4044 1 13350 13350 4.756 0 1 13018 8839 8264 8270 16104 16104 0.03431117977083886 HWRLTHLS 8 Unmodified _HWRLTHLS_ 0 0 0 REV__Tigger3a_dup965|chr3:11470211-11470527:-|1.3761816451370812|0.0881698256335836|3.96|150.0|14|1|anti-sense REV__Tigger3a_dup965|chr3:11470211-11470527:-|1.3761816451370812|0.0881698256335836|3.96|150.0|14|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.3041381835938 2 525.2856 1048.55665 NaN NaN NaN NaN NaN NaN NaN 58.516 1 61.681 61.181 62.181 3.1658 0 0 0 0.4044 1 13602 13602 4.756 0.42677 1 + 13019 32725 8265 8271 16105 16105 0.03431117977083886 HWRRTYNY 8 Unmodified _HWRRTYNY_ 0 0 0 HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|60|2|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|60|2|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|60|2|sense MSMS UPN48_class_I_Rep_1 5 598.2922973632812 2 598.291414 1194.56827 NaN NaN NaN NaN NaN NaN NaN 24.715 1 28.282 27.782 28.782 3.5667 0 0 0 0.40746 1 2769 2769 0.69038 0.088878 1 13020 8112 8266 8272 16106 16106 -0.021226849995628072 HWRRVAVMPL 10 Unmodified _HWRRVAVMPL_ 0 0 0 REV__MLT1C_dup7884|chr7:36629834-36630276:+|1.1005126705907926|0.0372697294390318|4.88|151.0|24|2|anti-sense REV__MLT1C_dup7884|chr7:36629834-36630276:+|1.1005126705907926|0.0372697294390318|4.88|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 632.8563842773438 2 632.858409 1263.70227 NaN NaN NaN NaN NaN NaN NaN 71.188 1 74.706 74.206 75.206 3.5185 0 0 0 0.53105 1 16513 16513 7.2892 2.3922 1 + 13021 31657 8267 8273 16107 16107 0.0809625750162013 HWSGKGRHKR 10 Unmodified _HWSGKGRHKR_ 0 0 0 REV__L1MA8_dup1918|chr3:142472940-142473540:-|2.0379620043249984|0.1084724842031417|4.23|151.0|12|2|sense REV__L1MA8_dup1918|chr3:142472940-142473540:-|2.0379620043249984|0.1084724842031417|4.23|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 624.8445434570312 2 624.844679 1247.67481 NaN NaN NaN NaN NaN NaN NaN 77.531 1 81.053 80.553 81.553 3.5221 0 0 0 0.53105 1 18456 18456 1.4819 0 1 + 13022 25539 8268 8274 16108 16108 0.06087490285585773 HWTDEVHH 8 Unmodified _HWTDEVHH_ 0 0 0 nc|ENSG00000112964|P10912-3|GHR;nc|ENSG00000112964|P10912-2|GHR;nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR nc|ENSG00000112964|P10912-3|GHR nc|ENSG00000112964|P10912-3|GHR MSMS UPN47_class_I_Rep_2 3 530.734619140625 2 530.733397 1059.45224 NaN NaN NaN NaN NaN NaN NaN 20.842 1 24.249 23.749 24.749 3.4074 0 0 0 0.40625 1 2234 2234 2.3027 0.4585 1 13023 2028 8269 8275 16109 16109 -0.0751062857029865 HWTDEVHH 8 Unmodified _HWTDEVHH_ 0 0 0 nc|ENSG00000112964|P10912-3|GHR;nc|ENSG00000112964|P10912-2|GHR;nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR nc|ENSG00000112964|P10912-3|GHR nc|ENSG00000112964|P10912-3|GHR MSMS UPN48_class_I_Rep_1 5 530.7343139648438 2 530.733397 1059.45224 NaN NaN NaN NaN NaN NaN NaN 20.854 1 24.399 23.899 24.899 3.5454 0 0 0 0.40746 1 1820 1820 0.69038 0 1 13024 2028 8269 8275 16110 16110 -0.0751062857029865 HWVVFLLL 8 Unmodified _HWVVFLLL_ 0 0 0 L1MB8_dup11429|chr11:130272242-130273298:-|1.3898886953402965|0.0184637495238824|6.23|151.0|70|3|anti-sense L1MB8_dup11429|chr11:130272242-130273298:-|1.3898886953402965|0.0184637495238824|6.23|151.0|70|3|anti-sense L1MB8_dup11429|chr11:130272242-130273298:-|1.3898886953402965|0.0184637495238824|6.23|151.0|70|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 513.3086547851562 2 513.810388 1025.60622 0.23777 0.00012217 -4.3571 -0.0022387 -4.1193 -0.0021166 513.8068684196113 87.979 0.097755 91.426 91.353 91.451 3.4471 11 9 2 0 0 0 0.72333 1 21874 21874 0.79363 0.10326 1 68553 13025 10913 8270 8276 16111 16111 0.09444432933196367 HWVWHQLV 8 Unmodified _HWVWHQLV_ 0 0 0 REV__L1PA17_dup3139|chr10:48336815-48340545:+|4.359049074070192|0.1049366483354406|5.38|151.0|156|1|anti-sense REV__L1PA17_dup3139|chr10:48336815-48340545:+|4.359049074070192|0.1049366483354406|5.38|151.0|156|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7453002929688 2 552.790518 1103.56648 NaN NaN NaN NaN NaN NaN NaN 37.585 1 40.975 40.475 41.475 3.3907 0 0 0 0.40604 1 7183 7183 2.5775 0.73324 1 + 13026 29465 8271 8277 16112 16112 0.018843059824575903 HWWDRQWF 8 Unmodified _HWWDRQWF_ 0 0 0 REV__THE1A-int_dup192|chr2:143713462-143715032:-|2.0930551383980385|0.0083412597264538|7.97|151.0|21|2|sense REV__THE1A-int_dup192|chr2:143713462-143715032:-|2.0930551383980385|0.0083412597264538|7.97|151.0|21|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 421.3286437988281 3 420.86143 1259.56246 0.016375 6.8917E-06 0.39253 0.0001652 0.4089 0.00017209 420.86163153961513 15.089 0.17872 18.607 18.507 18.686 3.5184 28 22 2 0 0 0 0.72333 1 524 524 0.45834 0.37499 1 26726 + 13027 32210 8272 8278 16113 16113 -0.05693783511264883 HWWDRQWF 8 Unmodified _HWWDRQWF_ 0 0 0 REV__THE1A-int_dup192|chr2:143713462-143715032:-|2.0930551383980385|0.0083412597264538|7.97|151.0|21|2|sense REV__THE1A-int_dup192|chr2:143713462-143715032:-|2.0930551383980385|0.0083412597264538|7.97|151.0|21|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 420.86143 1259.56246 -0.94466 -0.00039757 1.1164 0.00046983 0.1717 7.2263E-05 420.8619570511224 14.908 0.37879 18.294 18.142 18.521 3.3864 -0.078744 -0.00019292 NaN 0.45834 121 41 4 NaN NaN NaN NaN 0 NaN NaN 0 112010 + 13028 32210 8272 8278 -0.05693783511264883 HWWDRQWF 8 Unmodified _HWWDRQWF_ 0 0 0 REV__THE1A-int_dup192|chr2:143713462-143715032:-|2.0930551383980385|0.0083412597264538|7.97|151.0|21|2|sense REV__THE1A-int_dup192|chr2:143713462-143715032:-|2.0930551383980385|0.0083412597264538|7.97|151.0|21|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 420.86143 1259.56246 -1.4575 -0.0006134 1.5577 0.00065556 0.10017 4.2158E-05 420.8621525439371 14.977 0.40519 18.343 18.218 18.623 3.3659 -0.029772 0.00036426 NaN 0.45834 110 48 4 NaN NaN NaN NaN 0 NaN NaN 0 108510 + 13029 32210 8272 8278 -0.05693783511264883 HWWECKLIQ 9 Unmodified _HWWECKLIQ_ 0 0 0 L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|50|1|sense L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|50|1|sense L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|50|1|sense MSMS UPN47_class_I_Rep_1 2 621.8084716796875 2 621.808051 1241.60155 NaN NaN NaN NaN NaN NaN NaN 110.81 1 114.4 113.9 114.9 3.5835 0 0 0 0.4007 1 27322 27322 0.52476 0 1 13030 14766 8273 8279 16114 16114 -0.009588192718865685 HWWESFKL 8 Unmodified _HWWESFKL_ 0 0 0 REV__nc|ENSG00000134899|P28715-2|ERCC5 REV__nc|ENSG00000134899|P28715-2|ERCC5 MSMS UPN46_class_I_Rep_3 1 566.7843627929688 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 24.585 1 24.585 24.085 25.085 0 0 0 0 0.40738 1 3251 3251 0.79363 0 1 + 13031 19118 8274 8280 16115 16115 -0.01034819974279344 HWWGDGCG 8 Unmodified _HWWGDGCG_ 0 0 0 REV__L1MD2_dup4754|chr8:27356647-27357263:+|3.400948274783964|0.0978179723176289|5.12|151.0|15|3|sense REV__L1MD2_dup4754|chr8:27356647-27357263:+|3.400948274783964|0.0978179723176289|5.12|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 459.1719665527344 2 459.171587 916.328621 NaN NaN NaN NaN NaN NaN NaN 80.659 1 84.221 83.721 84.721 3.5624 0 0 0 0.40738 1 19223 19223 0.79363 0 1 + 13032 27407 8275 8281 16116 16116 -0.1328900294225832 HWWVENIK 8 Unmodified _HWWVENIK_ 0 0 0 REV__AluJb_dup88534|chr13:28096943-28097241:+|1.4103691402074945|0.0018471680278578|9.58|151.0|2|1|sense REV__AluJb_dup88534|chr13:28096943-28097241:+|1.4103691402074945|0.0018471680278578|9.58|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 556.2882690429688 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 79.222 1 82.577 82.077 83.077 3.3554 0 0 0 0.40738 1 19710 19710 0.79363 0 1 + 13033 16971 8276 8282 16117 16117 0.01020582399974046 HWWYMPIYL 9 Unmodified _HWWYMPIYL_ 0 0 0 REV__ENSG00000166135|ENST00000299163|HIF1AN REV__ENSG00000166135|ENST00000299163|HIF1AN MULTI-SECPEP UPN48_class_I_Rep_1 5 436.2691345214844 3 436.879322 1307.61614 0.017567 7.6746E-06 0.50775 0.00022183 0.52532 0.0002295 436.8792469070877 67.522 0.16596 70.974 70.928 71.094 3.4516 15 11 2 0 0 0 0.12509 1 15546 15546 1.1933 0.73882 1 61780 + 13034 20154 8277 8283 16118 16118 -0.02536747123758687 HYAKCNPYMD 10 Unmodified _HYAKCNPYMD_ 0 0 0 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MSMS UPN47_class_I_Rep_2 3 621.259521484375 2 621.257533 1240.50051 NaN NaN NaN NaN NaN NaN NaN 54.946 1 58.257 57.757 58.757 3.3102 0 0 0 0.53105 1 12463 12463 1.6526 0.17072 1 13035 2316 8278 8284 16119 16119 -0.110116390369285 HYAKRKPV 8 Unmodified _HYAKRKPV_ 0 0 0 L1MB7_dup16113|chr12:110303884-110304866:-|1.9802989954438277|0.0338798877259019|5.87|151.0|11|1|sense L1MB7_dup16113|chr12:110303884-110304866:-|1.9802989954438277|0.0338798877259019|5.87|151.0|11|1|sense L1MB7_dup16113|chr12:110303884-110304866:-|1.9802989954438277|0.0338798877259019|5.87|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 500.2681579589844 2 499.798343 997.582134 NaN NaN NaN NaN NaN NaN NaN 111.24 1 114.81 114.31 115.31 3.572 0 0 0 0.40746 1 27432 27432 0.69038 0 1 13036 10730 8279 8285 16120 16120 0.08324592499513983 HYCCCEVNCQ 10 Unmodified _HYCCCEVNCQ_ 0 0 0 L1ME3A_dup1258|chr2:10206493-10207046:+|1.2322995319253998|0.0635289495328137|4.28|150.0|22|1|anti-sense L1ME3A_dup1258|chr2:10206493-10207046:+|1.2322995319253998|0.0635289495328137|4.28|150.0|22|1|anti-sense L1ME3A_dup1258|chr2:10206493-10207046:+|1.2322995319253998|0.0635289495328137|4.28|150.0|22|1|anti-sense MSMS UPN48_class_I_Rep_1 5 601.2009887695312 2 601.198304 1200.38205 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.51 118.01 119.01 3.6301 0 0 0 0.53105 1 27933 27933 0.35063 0.35063 1 13037 12632 8280 8286 16121 16121 -0.21012077608588697 HYCENPEAH 9 Unmodified _HYCENPEAH_ 0 0 0 nc|ENSG00000163803|Q6P1J6-5|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1 nc|ENSG00000163803|Q6P1J6-5|PLB1 nc|ENSG00000163803|Q6P1J6-5|PLB1 MSMS UPN48_class_I_Rep_2 6 550.2174072265625 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 119.36 1 123.02 122.52 123.52 3.6652 0 0 0 0.39518 1 28643 28643 1.8442 1.0506 1 13038 4043 8281 8287 16122 16122 -0.126379984045343 HYCMLEKY 8 Unmodified _HYCMLEKY_ 0 0 0 REV__MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|42|2|anti-sense REV__MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.743896484375 2 543.740988 1085.46742 NaN NaN NaN NaN NaN NaN NaN 112.05 1 115.68 115.18 116.18 3.6321 0 0 0 0.40625 1 27186 27186 2.3027 0 1 + 13039 31168 8282 8288 16123 16123 -0.07189221088947306 HYEYVTKKWY 10 Unmodified _HYEYVTKKWY_ 0 0 0 REV__L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|25|2|sense REV__L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.90374755859375 3 472.903072 1415.68739 0.32103 0.00015182 -0.066881 -3.1628E-05 0.25415 0.00012019 472.9027142743742 15.221 0.49668 18.874 18.685 19.182 3.6535 97 68 2 0 0 0 0.56444 1 591 591 0.69767 0 1 45444 + 13040 24573 8283 8289 16124 16124 -0.003829558853794879 HYEYVTKKWY 10 Unmodified _HYEYVTKKWY_ 0 0 0 REV__L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|25|2|sense REV__L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 472.903072 1415.68739 0.083984 3.9717E-05 0.4647 0.00021976 0.54868 0.00025947 472.903058963614 15.477 0.39527 19.016 18.871 19.266 3.5392 -0.01019 0.00025307 NaN 0.69767 82 53 2 NaN NaN NaN NaN 0 NaN NaN 0 35729 + 13041 24573 8283 8289 -0.003829558853794879 HYFDIVYM 8 Unmodified _HYFDIVYM_ 0 0 0 Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|10|2|sense Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|10|2|sense Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 544.2489013671875 2 544.249503 1086.48445 NaN NaN NaN NaN NaN NaN NaN 26.483 1 30.116 29.616 30.616 3.6332 0 0 0 0.40738 1 3378 3378 0.79363 0 1 13042 451 8284 8290 16125 16125 -0.055329772115328524 HYFDSLIVL 9 Unmodified _HYFDSLIVL_ 0 0 0 REV__L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|50|2|anti-sense REV__L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.7969970703125 2 553.797675 1105.5808 -0.030327 -1.6795E-05 -0.55746 -0.00030872 -0.58778 -0.00032551 554.298609272574 32.308 0.12625 36.021 35.98 36.107 3.7131 12 9 2 0 0 0 0.48643 1 5562 5562 2.0598 0 1 39693 + 13043 26108 8285 8291 16126 16126 0.03222913620084 HYFDSLIVL 9 Unmodified _HYFDSLIVL_ 0 0 0 REV__L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|50|2|anti-sense REV__L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|50|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 553.797675 1105.5808 -0.030327 -1.6795E-05 -0.55746 -0.00030872 -0.58778 -0.00032551 554.298609272574 32.308 0.12625 36.021 35.98 36.107 3.7131 0 0 NaN 2.0598 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 39693 + 13044 26108 8285 8291 0.03222913620084 HYFECVPEI 9 Unmodified _HYFECVPEI_ 0 0 0 L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|349|3|anti-sense;L1PA4_dup10810|chr16:31307020-31310933:-|1.3311853112010732|0.0564117061676157|4.56|151.0|184|2|anti-sense;L1PA3_dup7637|chr10:74216881-74223021:+|4.513908480505558|0.0955777143311824|5.56|151.0|343|3|anti-sense;L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|349|3|anti-sense L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|349|3|anti-sense L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|349|3|anti-sense MSMS UPN48_class_I_Rep_2 6 568.7576293945312 2 568.757692 1135.50083 NaN NaN NaN NaN NaN NaN NaN 24.026 1 27.665 27.165 28.165 3.6397 0 0 0 0.39518 1 2722 2722 1.8442 0 1 13045 14258 8286 8292 16127 16127 -0.06149896045417336 HYFEFPFW 8 Unmodified _HYFEFPFW_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.762939453125 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 17.736 1 21.262 20.762 21.762 3.5261 0 0 0 0.40746 1 1077 1077 0.69038 0 1 13046 9841 8287 8293 16128 16128 -0.06617911239914065 HYFFRYFW 8 Unmodified _HYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MSMS UPN48_class_I_Rep_3 7 633.298583984375 2 633.298176 1264.5818 NaN NaN NaN NaN NaN NaN NaN 31.242 1 34.943 34.443 35.443 3.7015 0 0 0 0.40746 1 4597 4597 0.69038 0 1 13047 10256 8288 8294 16129 16129 -0.03990827220354731 HYFPFQFY 8 Unmodified _HYFPFQFY_ 0 0 0 L1ME1_dup30735|chr22:44208759-44209577:-|5.403103496215306|0.285981907961655|4.24|151.0|46|2|anti-sense L1ME1_dup30735|chr22:44208759-44209577:-|5.403103496215306|0.285981907961655|4.24|151.0|46|2|anti-sense L1ME1_dup30735|chr22:44208759-44209577:-|5.403103496215306|0.285981907961655|4.24|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_1 2 574.7660522460938 2 574.763635 1147.51272 NaN NaN NaN NaN NaN NaN NaN 68.018 1 71.383 70.883 71.883 3.3646 0 0 0 0.38547 1 16393 16393 13.508 2.3934 1 13048 12390 8289 8295 16130 16130 -0.05513911239904701 HYFPFQFY 8 Unmodified _HYFPFQFY_ 0 0 0 L1ME1_dup30735|chr22:44208759-44209577:-|5.403103496215306|0.285981907961655|4.24|151.0|46|2|anti-sense L1ME1_dup30735|chr22:44208759-44209577:-|5.403103496215306|0.285981907961655|4.24|151.0|46|2|anti-sense L1ME1_dup30735|chr22:44208759-44209577:-|5.403103496215306|0.285981907961655|4.24|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_3 4 574.7654418945312 2 574.763635 1147.51272 NaN NaN NaN NaN NaN NaN NaN 68.311 1 71.508 71.008 72.008 3.1977 0 0 0 0.39624 1 16590 16590 9.3474 0 1 13049 12390 8289 8295 16131 16131 -0.05513911239904701 HYFYYVEI 8 Unmodified _HYFYYVEI_ 0 0 0 L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|130|1|anti-sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|130|1|anti-sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|130|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.2672119140625 2 567.26875 1132.52295 0.39053 0.00022154 -1.111 -0.00063023 -0.72045 -0.00040869 567.2679339720669 49.075 0.73073 52.422 51.885 52.616 3.3465 60 44 2 0 0 0 0.82752 1 10660 10660 5.7604 1.816 1 109620 13050 9435 8290 8296 16132 16132 -0.038013483053418895 HYFYYVEI 8 Unmodified _HYFYYVEI_ 0 0 0 L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|130|1|anti-sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|130|1|anti-sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|130|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.2687377929688 2 567.26875 1132.52295 0.43458 0.00024652 -1.3121 -0.0007443 -0.87749 -0.00049777 567.2678517013976 49.141 0.85259 52.376 51.825 52.677 3.2345 74 50 2 0 0 0 0.82752 2 10640 10640;10708 5.7604 1.816 1 89940 13051 9435 8290 8296 16133;16134 16133 -0.038013483053418895 HYGFHGSY 8 Unmodified _HYGFHGSY_ 0 0 0 REV__L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|61|1|anti-sense REV__L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|61|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.20611572265625 2 484.206484 966.398415 0.25298 0.0001225 -0.64075 -0.00031026 -0.38777 -0.00018776 484.20617478457797 18.675 0.40801 22.206 22.132 22.54 3.5313 81 53 2 0 0 0 0.82752 1 1340 1340 2.3027 2.3027 1 56137 + 13052 27331 8291 8297 16135 16135 -0.08612801001993375 HYGKVYLL 8 Unmodified _HYGKVYLL_ 0 0 0 nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-2|VPS41 MULTI-MSMS UPN48_class_I_Rep_2 6 496.78118896484375 2 496.781828 991.549102 0.21384 0.00010623 -0.1243 -6.1752E-05 0.089535 4.4479E-05 496.7815296037813 42.548 0.73038 46.306 45.986 46.716 3.7579 95 65 2 0 0 0 0.82752 1 7942 7942 18.135 3.5533 1 134490 13053 724 8292 8298 16136 16136 0.052989656568115606 HYGLLWRW 8 Unmodified _HYGLLWRW_ 0 0 0 L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|24|2|sense L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|24|2|sense L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|24|2|sense MSMS UPN47_class_I_Rep_3 4 565.7415161132812 2 565.798343 1129.58213 NaN NaN NaN NaN NaN NaN NaN 18.056 1 21.415 20.915 21.915 3.3581 0 0 0 0.40746 1 1430 1430 0.69038 0 1 13054 13621 8293 8299 16137 16137 0.022525924994852176 HYGLRDSILM 10 Unmodified _HYGLRDSILM_ 0 0 0 REV__ENSG00000178234.13,GALNT11,chr7,+,I9.1,152105371,152107249|44|6.51|1|intron REV__ENSG00000178234.13,GALNT11,chr7,+,I9.1,152105371,152107249|44|6.51|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 602.811279296875 2 602.81079 1203.60703 0.47849 0.00028844 0.62122 0.00037448 1.0997 0.00066292 602.8111244302471 70.759 0.34743 74.295 74.149 74.497 3.5359 51 40 2 0 0 0 0.54822 1 16455 16455 5.7319 1.7875 1 97837 + 13055 20647 8294 8300 16138 16138 0.013368595198926414 HYGYKEYV 8 Unmodified _HYGYKEYV_ 0 0 0 REV__ENSG00000165434|ENST00000298198|PGM2L1 REV__ENSG00000165434|ENST00000298198|PGM2L1 MSMS UPN47_class_I_Rep_3 4 529.7505493164062 2 529.750724 1057.4869 NaN NaN NaN NaN NaN NaN NaN 117.37 1 120.81 120.31 121.31 3.4425 0 0 0 0.40738 1 28914 28914 0.79363 0 1 + 13056 20118 8295 8301 16139 16139 -0.03954805482203483 HYHFQQEL 8 Unmodified _HYHFQQEL_ 0 0 0 REV__ENSG00000165175|ENST00000614558|MID1IP1 REV__ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS UPN48_class_I_Rep_1 5 551.2587890625 2 551.259248 1100.50394 0.65019 0.00035842 -1.6944 -0.00093405 -1.0442 -0.00057563 551.2583493833898 61.32 0.34745 64.788 64.56 64.907 3.4678 44 31 2 0 0 0 0.82752 1 13610 13610 11.64 2.2929 1 96125 + 13057 20107 8296 8302 16140 16140 -0.0422888487637465 HYHFQQEL 8 Unmodified _HYHFQQEL_ 0 0 0 REV__ENSG00000165175|ENST00000614558|MID1IP1 REV__ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS UPN48_class_I_Rep_2 6 551.2579345703125 2 551.259248 1100.50394 0.55276 0.00030472 -1.5488 -0.00085377 -0.996 -0.00054905 551.258348297944 61.191 0.25701 64.669 64.563 64.82 3.4785 32 22 2 0 0 0 0.82752 2 13560 13560;13570 28.487 6.7402 1 103300 + 13058 20107 8296 8302 16141;16142 16141 -0.0422888487637465 HYHFQQEL 8 Unmodified _HYHFQQEL_ 0 0 0 REV__ENSG00000165175|ENST00000614558|MID1IP1 REV__ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 551.259248 1100.50394 0.65019 0.00035842 -1.6944 -0.00093405 -1.0442 -0.00057563 551.2583493833898 61.32 0.34745 64.788 64.56 64.907 3.4678 0.10338 -0.00013189 NaN 11.64 44 31 2 NaN NaN NaN NaN 0 NaN NaN 0 96125 + 13059 20107 8296 8302 -0.0422888487637465 HYHFQQEL 8 Unmodified _HYHFQQEL_ 0 0 0 REV__ENSG00000165175|ENST00000614558|MID1IP1 REV__ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 551.259248 1100.50394 0.40313 0.00022223 -1.4959 -0.00082465 -1.0928 -0.00060242 551.2584146265518 61.083 0.35812 64.596 64.372 64.73 3.5128 -0.088291 8.6916E-05 NaN 11.64 44 32 2 NaN NaN NaN NaN 0 NaN NaN 0 104790 + 13060 20107 8296 8302 -0.0422888487637465 HYHHFFII 8 Unmodified _HYHHFFII_ 0 0 0 ENST00000282561.3_1_6:121769761-121769857:+|nuORF ENST00000282561.3_1_6:121769761-121769857:+|nuORF ENST00000282561.3_1_6:121769761-121769857:+|nuORF MSMS UPN48_class_I_Rep_3 7 557.2867431640625 2 557.285069 1112.55558 NaN NaN NaN NaN NaN NaN NaN 21.868 1 25.582 25.082 26.082 3.7144 0 0 0 0.40738 1 2135 2135 0.79363 0.10326 1 13061 6033 8297 8303 16143 16143 0.0038090360819751368 HYHPCHHR 8 Unmodified _HYHPCHHR_ 0 0 0 REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN47_class_I_Rep_2 3 543.7438354492188 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 22.593 1 26.038 25.538 26.538 3.4447 0 0 0 0.40738 1 2706 2706 0.79363 0 1 + 13062 21797 8298 8304 16144 16144 -0.06671736391467675 HYHPCHHR 8 Unmodified _HYHPCHHR_ 0 0 0 REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN47_class_I_Rep_3 4 543.7434692382812 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 111.21 1 114.74 114.24 115.24 3.529 0 0 0 0.40738 1 27292 27292 0.79363 0 1 + 13063 21797 8298 8304 16145 16145 -0.06671736391467675 HYHPCHHR 8 Unmodified _HYHPCHHR_ 0 0 0 REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.7438354492188 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 27.577 1 31.208 30.708 31.708 3.6311 0 0 0 0.40738 1 3673 3673 0.79363 0 1 + 13064 21797 8298 8304 16146 16146 -0.06671736391467675 HYHPCHHR 8 Unmodified _HYHPCHHR_ 0 0 0 REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN48_class_I_Rep_3 7 543.7437744140625 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 22.686 1 26.436 25.936 26.936 3.7507 0 0 0 0.40604 1 2353 2353 2.5775 0 1 + 13065 21797 8298 8304 16147 16147 -0.06671736391467675 HYHPKFIVH 9 Unmodified _HYHPKFIVH_ 0 0 0 L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|38|2|anti-sense L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|38|2|anti-sense L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.3170776367188 2 589.3169 1176.61925 NaN NaN NaN NaN NaN NaN NaN 60.737 1 64.002 63.502 64.502 3.2654 0 0 0 0.40038 1 14230 14230 0.6015 0 1 13066 11180 8299 8305 16148 16148 0.03800264045253243 HYIHYLYK 8 Unmodified _HYIHYLYK_ 0 0 0 REV__L1MA7_dup6600|chr12:118201696-118202639:-|2.9732364351004925|0.0226212312379103|7.04|151.0|46|2|anti-sense REV__L1MA7_dup6600|chr12:118201696-118202639:-|2.9732364351004925|0.0226212312379103|7.04|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_3 4 568.796875 2 568.798009 1135.58147 NaN NaN NaN NaN NaN NaN NaN 67.53 1 70.721 70.221 71.221 3.1914 0 0 0 0.40738 1 16355 16355 0.79363 0 1 + 13067 25519 8300 8306 16149 16149 0.01909753059794639 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|3|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron;ENSG00000163659|ENST00000295924|TIPARP;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|2|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron MULTI-MSMS UPN48_class_I_Rep_1 5 589.2932739257812 2 589.293091 1176.57163 0.45895 0.00027045 0.021678 1.2775E-05 0.48063 0.00028323 589.2929586041445 54.785 0.66766 58.293 58.038 58.706 3.5082 67 44 2 0 0 0 0.16559 2 11669 11590;11669 24.021 10.115 1 199000 13068 4029 8301 8307 16150;16151 16151 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|3|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron;ENSG00000163659|ENST00000295924|TIPARP;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|2|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron MSMS UPN48_class_I_Rep_1 5 589.2952270507812 2 589.293091 1176.57163 NaN NaN NaN NaN NaN NaN NaN 55.248 1 58.756 58.256 59.256 3.5082 0 0 0 0.085573 1 11774 11774 27.629 13.723 1 13069 4029 8301 8307 16152 16152 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|3|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron;ENSG00000163659|ENST00000295924|TIPARP;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|2|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron MSMS UPN48_class_I_Rep_1 5 589.2936401367188 2 589.293091 1176.57163 NaN NaN NaN NaN NaN NaN NaN 55.264 1 58.772 58.272 59.272 3.5082 0 0 0 0.29913 1 11779 11779 10.8 2.8894 1 13070 4029 8301 8307 16153 16153 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|3|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron;ENSG00000163659|ENST00000295924|TIPARP;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|2|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron MULTI-MSMS UPN48_class_I_Rep_2 6 589.2930297851562 2 589.293091 1176.57163 0.59618 0.00035132 0.15204 8.9599E-05 0.74822 0.00044092 589.2930431780262 54.767 0.79088 58.349 58.042 58.833 3.5817 77 48 2 0 0 0 0.074399 5 11606 11555;11571;11606;11661;11713 39.95 20.693 1 178060 13071 4029 8301 8307 16154;16155;16156;16157;16158 16156 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|3|intron;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron;ENSG00000163659|ENST00000295924|TIPARP;ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|2|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|4|intron MULTI-MSMS UPN48_class_I_Rep_3 7 589.2935180664062 2 589.293091 1176.57163 0.37556 0.00022131 0.38115 0.00022461 0.7567 0.00044592 589.2931340889122 54.806 0.90049 58.376 57.937 58.837 3.5694 88 57 3 0 0 0 0.13244 4 11547 11495;11547;11599;11643 27.629 13.723 1 176620 13072 4029 8301 8307 16159;16160;16161;16162 16160 -0.009594349455710471 HYIMKKRI 8 Unmodified _HYIMKKRI_ 0 0 0 L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|112|3|sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|112|3|sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|112|3|sense MSMS UPN47_class_I_Rep_2 3 544.825439453125 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.368 1 92.821 92.321 93.321 3.4525 0 0 0 0.40604 1 22205 22205 2.5775 0 1 13073 15215 8302 8308 16163 16163 0.09214378833007686 HYIMKKRI 8 Unmodified _HYIMKKRI_ 0 0 0 L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|112|3|sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|112|3|sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|112|3|sense MSMS UPN47_class_I_Rep_3 4 545.2625122070312 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 22.741 1 26.092 25.592 26.592 3.3503 0 0 0 0.40738 1 2771 2771 0.79363 0 1 13074 15215 8302 8308 16164 16164 0.09214378833007686 HYIYNNLDF 9 Unmodified _HYIYNNLDF_ 0 0 0 L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|74|3|anti-sense L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|74|3|anti-sense L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|74|3|anti-sense MSMS UPN48_class_I_Rep_1 5 599.7802734375 2 599.780013 1197.54547 NaN NaN NaN NaN NaN NaN NaN 66.038 1 69.489 68.989 69.989 3.4516 0 0 0 0.39518 1 15070 15070 1.8442 0.36234 1 13075 9225 8303 8309 16165 16165 -0.045397489077458886 HYKILLMEVK 10 Unmodified _HYKILLMEVK_ 0 0 0 L1ME2_dup3131|chr3:179170622-179172999:+|3.7311105242385194|0.1183838598201748|4.98|151.0|89|3|sense L1ME2_dup3131|chr3:179170622-179172999:+|3.7311105242385194|0.1183838598201748|4.98|151.0|89|3|sense L1ME2_dup3131|chr3:179170622-179172999:+|3.7311105242385194|0.1183838598201748|4.98|151.0|89|3|sense MSMS UPN48_class_I_Rep_3 7 637.3715209960938 2 637.370484 1272.72641 NaN NaN NaN NaN NaN NaN NaN 102.68 1 106.45 105.95 106.95 3.776 0 0 0 0.53105 1 24261 24261 2.9952 0 1 13076 12501 8304 8310 16166 16166 0.10096053144616235 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS UPN48_class_I_Rep_1 5 583.3068237304688 2 583.305667 1164.59678 0.39966 0.00023312 0.40245 0.00023475 0.80211 0.00046787 583.3057786995979 47.396 1.018 50.918 50.45 51.468 3.5219 95 76 2 0 0 0 0.057664 3 9396 9335;9396;9410 45.7 18.816 1 253200 13077 2061 8305 8311 16167;16168;16169 16168 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS UPN48_class_I_Rep_2 6 583.3065185546875 2 583.305667 1164.59678 0.38375 0.00022384 0.43801 0.0002555 0.82176 0.00047934 583.305855120646 47.191 0.95206 50.94 50.471 51.424 3.7494 121 81 2 0 0 0 0.052902 2 9289 9289;9402 47.749 13.646 1 208460 13078 2061 8305 8311 16170;16171 16170 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS UPN48_class_I_Rep_3 7 583.3076782226562 2 583.305667 1164.59678 0.41734 0.00024344 0.62054 0.00036196 1.0379 0.0006054 583.30598180838 47.39 0.61758 51.027 50.946 51.564 3.6363 83 52 2 0 0 0 0.057664 1 9286 9286 45.7 25.246 1 252080 13079 2061 8305 8311 16172 16172 0.02106619856999714 HYKQNLDKL 9 Unmodified _HYKQNLDKL_ 0 0 0 REV__L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|50|1|sense REV__L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|50|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.8175659179688 2 579.81693 1157.61931 0.40978 0.0002376 0.0065188 3.7797E-06 0.4163 0.00024138 579.8169034216139 42.916 0.60223 46.673 46.355 46.957 3.7579 84 48 2 0 0 0 0.49026 1 7947 7947 1.6526 0.17072 1 213550 + 13080 29999 8306 8312 16173 16173 0.0468021925460107 HYLKKLFC 8 Unmodified _HYLKKLFC_ 0 0 0 REV__L1MB7_dup4098|chr3:45648223-45649177:-|1.1443594522598113|0.0095395249208745|6.91|150.0|63|3|anti-sense REV__L1MB7_dup4098|chr3:45648223-45649177:-|1.1443594522598113|0.0095395249208745|6.91|150.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 526.2869873046875 2 526.291505 1050.56846 NaN NaN NaN NaN NaN NaN NaN 27.58 1 31.336 30.836 31.836 3.7555 0 0 0 0.40625 1 3637 3637 2.3027 0.24298 1 + 13081 26259 8307 8313 16174 16174 0.045195986760745654 HYLRQQEIL 9 Unmodified _HYLRQQEIL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS UPN47_class_I_Rep_2 3 600.3003540039062 2 600.330205 1198.64586 NaN NaN NaN NaN NaN NaN NaN 55.772 1 59.082 58.582 59.582 3.3102 0 0 0 0.39428 1 12714 12714 2.0598 0.40713 1 13082 925 8308 8314 16175 16175 0.05447908145947622 HYMIKGLIN 9 Unmodified _HYMIKGLIN_ 0 0 0 L1MDa_dup571|chr2:68229309-68229965:-|2.336570398302679|0.0084594054015064|8.11|151.0|2|1|sense L1MDa_dup571|chr2:68229309-68229965:-|2.336570398302679|0.0084594054015064|8.11|151.0|2|1|sense L1MDa_dup571|chr2:68229309-68229965:-|2.336570398302679|0.0084594054015064|8.11|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 544.8012084960938 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 19.027 1 22.678 22.178 23.178 3.6509 0 0 0 0.39428 1 1378 1378 2.0598 0 1 13083 12137 8309 8315 16176 16176 0.04454679842160658 HYMNACCCTT 10 Unmodified _HYMNACCCTT_ 0 0 0 L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|39|1|anti-sense L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|39|1|anti-sense L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|39|1|anti-sense MSMS UPN47_class_I_Rep_2 3 573.7059936523438 2 573.695397 1145.37624 NaN NaN NaN NaN NaN NaN NaN 118.1 1 121.58 121.08 122.08 3.4822 0 0 0 0.53105 1 28884 28884 1.6526 0 1 13084 11638 8310 8316 16177 16177 -0.1906317612026669 HYNGPYGV 8 Unmodified _HYNGPYGV_ 0 0 0 REV__ENSG00000146205|ENST00000674324|ANO7 REV__ENSG00000146205|ENST00000674324|ANO7 MSMS UPN48_class_I_Rep_1 5 453.70977783203125 2 453.70886 905.403166 NaN NaN NaN NaN NaN NaN NaN 78.991 1 82.526 82.026 83.026 3.5352 0 0 0 0.40738 1 18841 18841 0.79363 0 1 + 13085 19534 8311 8317 16178 16178 -0.05331916859233843 HYPVVPAPL 9 Unmodified _HYPVVPAPL_ 0 0 0 REV__ENST00000440687.1_1_20:44728270-44728609:+|nuORF REV__ENST00000440687.1_1_20:44728270-44728609:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 497.28448486328125 2 496.781828 991.549102 0.16875 8.3833E-05 -0.28665 -0.0001424 -0.1179 -5.8571E-05 496.7816204743223 42.699 0.4717 46.341 45.995 46.467 3.6415 40 32 2 0 0 0 0.089864 1 7869 7869 20.871 7.3633 1 103960 + 13086 22327 8312 8318 16179 16179 0.05298965656788823 HYRRPRWV 8 Unmodified _HYRRPRWV_ 0 0 0 ENST00000552813.5_1_12:56391469-56396615:+|nuORF ENST00000552813.5_1_12:56391469-56396615:+|nuORF ENST00000552813.5_1_12:56391469-56396615:+|nuORF MSMS UPN48_class_I_Rep_1 5 585.3234252929688 2 585.325591 1168.63663 NaN NaN NaN NaN NaN NaN NaN 112.26 1 115.9 115.4 116.4 3.6321 0 0 0 0.40738 1 27237 27237 0.79363 0.19213 1 13087 7409 8313 8319 16180 16180 0.05905604370900619 HYRWELFCD 9 Unmodified _HYRWELFCD_ 0 0 0 REV__L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|66|1|anti-sense REV__L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|66|1|anti-sense MSMS UPN48_class_I_Rep_1 5 634.7781982421875 2 634.77949 1267.54443 NaN NaN NaN NaN NaN NaN NaN 113.69 1 117.32 116.82 117.82 3.6314 0 0 0 0.39428 1 27625 27625 2.0598 0 1 + 13088 27313 8314 8320 16181 16181 -0.07864286548283417 HYRYNYRK 8 Unmodified _HYRYNYRK_ 0 0 0 L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|77|3|sense L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|77|3|sense L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|77|3|sense MSMS UPN47_class_I_Rep_1 2 600.3067016601562 2 600.307064 1198.59957 NaN NaN NaN NaN NaN NaN NaN 43.951 1 47.646 47.146 48.146 3.6951 0 0 0 0.40746 1 9090 9090 0.69038 0 1 13089 8748 8315 8321 16182 16182 0.008218880344884383 HYRYYVREMRI 11 Unmodified _HYRYYVREMRI_ 0 0 0 nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 nc|ENSG00000163636|Q15008-3|PSMD6 nc|ENSG00000163636|Q15008-3|PSMD6 MULTI-MSMS UPN46_class_I_Rep_3 1 529.6076049804688 3 529.273393 1584.79835 0.30465 0.00016124 -0.87443 -0.00046282 -0.56978 -0.00030157 529.2727833477255 75.6 0.33299 75.6 75.384 75.717 0 46 33 2 0 0 0 0.68478 2 17601 17601;17614 0.094841 0.094841 1 481050 13090 4025 8316 8322 16183;16184 16183 0.02934360551012105 HYSANEVHPG 10 Unmodified _HYSANEVHPG_ 0 0 0 ENST00000380241.7_1_X:16720981-16730968:-|nuORF;ENST00000359276.8_1_X:16720981-16730725:-|nuORF ENST00000380241.7_1_X:16720981-16730968:-|nuORF ENST00000380241.7_1_X:16720981-16730968:-|nuORF MSMS UPN47_class_I_Rep_3 4 555.751220703125 2 555.751787 1109.48902 NaN NaN NaN NaN NaN NaN NaN 115.03 1 118.51 118.01 119.01 3.4802 0 0 0 0.53105 1 28269 28269 1.3295 0.5359 1 13091 6307 8317 8323 16185 16185 -0.06134376744398651 HYSEPRLCHC 10 Unmodified _HYSEPRLCHC_ 0 0 0 AluJr_dup6952|chr1:243068183-243068489:+|1.4177174296627508|0.2274361059701222|2.64|149.0|12|3|sense;AluJr_dup58|chr1:745296-745603:+|1.196675044915022|0.3048138073524024|1.97|148.0|4|1|sense;AluJr_dup37|chr1:503581-503888:+|1.4025035053440873|0.4076958194432336|1.78|145.0|4|1|sense AluJr_dup6952|chr1:243068183-243068489:+|1.4177174296627508|0.2274361059701222|2.64|149.0|12|3|sense AluJr_dup6952|chr1:243068183-243068489:+|1.4177174296627508|0.2274361059701222|2.64|149.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 622.7682495117188 2 622.7686 1243.52265 0.50597 0.0003151 -1.1264 -0.00070148 -0.62042 -0.00038638 623.2695653116058 48.257 0.4122 51.891 51.647 52.06 3.6339 36 26 2 0 0 0 0.56118 1 9555 9555 2.9952 0 1 98613 13092 148 8318 8324 16186 16186 -0.08937414568458735 HYTIVFNTF 9 Unmodified _HYTIVFNTF_ 0 0 0 nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1 nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS UPN48_class_I_Rep_1 5 571.287353515625 2 571.287474 1140.5604 0.48886 0.00027928 -0.42261 -0.00024143 0.066252 3.7849E-05 571.2870877642067 65.953 0.60834 69.405 69.233 69.841 3.4516 65 41 2 0 0 0 0.01718 3 15088 15046;15088;15171 65.235 34.598 1 230390 13093 959 8319 8325 16187;16188;16189 16188 -0.004262570397258969 HYTIVFNTF 9 Unmodified _HYTIVFNTF_ 0 0 0 nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1 nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS UPN48_class_I_Rep_2 6 571.2874755859375 2 571.287474 1140.5604 0.50867 0.0002906 -0.10617 -6.0654E-05 0.4025 0.00022994 571.2871653309271 65.97 0.64258 69.457 69.09 69.732 3.4866 69 43 3 0 0 0 0.0051925 5 14992 14946;14992;15035;15062;15120 92.653 42.72 1 276590 13094 959 8319 8325 16190;16191;16192;16193;16194 16191 -0.004262570397258969 HYTIVFNTF 9 Unmodified _HYTIVFNTF_ 0 0 0 nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1 nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS UPN48_class_I_Rep_3 7 571.2865600585938 2 571.287474 1140.5604 0.50468 0.00028832 -0.27959 -0.00015972 0.22509 0.00012859 571.2872035750586 65.792 0.68568 69.3 68.965 69.65 3.5077 78 45 2 0 0 0 0.0054033 3 14886 14841;14886;14956 78.728 36.888 1 234220 13095 959 8319 8325 16195;16196;16197 16196 -0.004262570397258969 HYVILHSS 8 Unmodified _HYVILHSS_ 0 0 0 L1PA15_dup617|chr2:31922476-31923350:-|1.4043566631933|0.0952710651727876|3.88|151.0|7|1|sense L1PA15_dup617|chr2:31922476-31923350:-|1.4043566631933|0.0952710651727876|3.88|151.0|7|1|sense L1PA15_dup617|chr2:31922476-31923350:-|1.4043566631933|0.0952710651727876|3.88|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 478.2517395019531 2 478.253434 954.492316 NaN NaN NaN NaN NaN NaN NaN 50.038 1 53.659 53.159 54.159 3.621 0 0 0 0.40581 1 10109 10109 2.8892 0.58649 1 13096 13960 8320 8326 16198 16198 0.01324918100283412 HYVKYGLL 8 Unmodified _HYVKYGLL_ 0 0 0 MER44C_dup780|chr17:16007195-16007881:-|4.279859000577547|0.4706231517142378|3.18|151.0|24|1|anti-sense MER44C_dup780|chr17:16007195-16007881:-|4.279859000577547|0.4706231517142378|3.18|151.0|24|1|anti-sense MER44C_dup780|chr17:16007195-16007881:-|4.279859000577547|0.4706231517142378|3.18|151.0|24|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 496.7817687988281 2 496.781828 991.549102 0.21384 0.00010623 -0.1243 -6.1752E-05 0.089535 4.4479E-05 496.7815296037813 42.548 0.73038 46.306 45.986 46.716 3.7579 95 65 2 0 0 0 0.82752 1 7904 7904 24.674 6.5389 1 134490 13097 15991 8321 8327 16199 16199 0.052989656568115606 HYVLWKEKP 9 Unmodified _HYVLWKEKP_ 0 0 0 ENST00000355774.6_2_14:75497265-75497367:-|nuORF ENST00000355774.6_2_14:75497265-75497367:-|nuORF ENST00000355774.6_2_14:75497265-75497367:-|nuORF MSMS UPN46_class_I_Rep_3 1 600.3334350585938 2 600.332216 1198.64988 NaN NaN NaN NaN NaN NaN NaN 13.408 1 13.408 12.908 13.908 0 0 0 0 0.40038 1 376 376 0.6015 0 1 13098 6282 8322 8328 16200 16200 0.05849997639643334 HYVLYKAV 8 Unmodified _HYVLYKAV_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS UPN48_class_I_Rep_1 5 496.7815856933594 2 496.781828 991.549102 0.19085 9.4811E-05 -0.25118 -0.00012478 -0.060329 -2.997E-05 496.7816377845911 42.88 0.4616 46.39 46.176 46.637 3.5103 47 34 2 0 0 0 0.82752 1 8037 8037 9.3474 0 1 94549 13099 1858 8323 8329 16201 16201 0.05298965656788823 HYVVHLKH 8 Unmodified _HYVVHLKH_ 0 0 0 L1MA9_dup13614|chr14:77360033-77360973:-|1.572173389941545|0.0223244349031167|6.14|151.0|32|3|sense;L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|96|3|sense L1MA9_dup13614|chr14:77360033-77360973:-|1.572173389941545|0.0223244349031167|6.14|151.0|32|3|sense L1MA9_dup13614|chr14:77360033-77360973:-|1.572173389941545|0.0223244349031167|6.14|151.0|32|3|sense MSMS UPN47_class_I_Rep_2 3 516.7903442382812 2 516.790518 1031.56648 NaN NaN NaN NaN NaN NaN NaN 86.414 1 89.855 89.355 90.355 3.4407 0 0 0 0.40604 1 21493 21493 2.5775 0.27475 1 13100 10107 8324 8330 16202 16202 0.05196305982485683 HYWCLFLY 8 Unmodified _HYWCLFLY_ 0 0 0 REV__L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|100|3|anti-sense REV__L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|100|3|anti-sense MSMS UPN47_class_I_Rep_1 2 572.7672119140625 2 572.767863 1143.52117 NaN NaN NaN NaN NaN NaN NaN 40.864 1 44.536 44.036 45.036 3.6719 0 0 0 0.40581 1 8148 8148 2.8892 0 1 + 13101 25231 8325 8331 16203 16203 -0.04484680594919155 HYWLFIQR 8 Unmodified _HYWLFIQR_ 0 0 0 L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|7|1|sense;L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|32|3|sense L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|7|1|sense L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 581.81103515625 2 581.811451 1161.60835 NaN NaN NaN NaN NaN NaN NaN 46.431 1 49.95 49.45 50.45 3.5192 0 0 0 0.40738 1 9064 9064 0.79363 0 1 13102 9786 8326 8332 16204 16204 0.034008616709797934 HYWNLQPMR 9 Unmodified _HYWNLQPMR_ 0 0 0 REV__Charlie1_dup1301|chr11:63851982-63853117:+|1.7847107170511054|0.02767817702288|6.01|151.0|51|1|anti-sense REV__Charlie1_dup1301|chr11:63851982-63853117:+|1.7847107170511054|0.02767817702288|6.01|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_1 5 622.8021850585938 2 622.8033 1243.59205 NaN NaN NaN NaN NaN NaN NaN 67.35 1 70.801 70.301 71.301 3.4516 0 0 0 0.39428 1 15472 15472 2.0598 0.40713 1 + 13103 17268 8327 8333 16205 16205 -0.02000587557427025 HYWPLIRF 8 Unmodified _HYWPLIRF_ 0 0 0 ENST00000513115.1_1_5:14769063-14871556:-|nuORF;ENSG00000154122|ENST00000284268|ANKH ENST00000513115.1_1_5:14769063-14871556:-|nuORF ENST00000513115.1_1_5:14769063-14871556:-|nuORF MSMS UPN48_class_I_Rep_1 5 566.308349609375 2 566.308544 1130.60253 NaN NaN NaN NaN NaN NaN NaN 101.05 1 104.66 104.16 105.16 3.612 0 0 0 0.40746 1 24397 24397 0.69038 0 1 13104 3659 8328 8334 16206 16206 0.042457631593151746 HYWPLIRF 8 Unmodified _HYWPLIRF_ 0 0 0 ENST00000513115.1_1_5:14769063-14871556:-|nuORF;ENSG00000154122|ENST00000284268|ANKH ENST00000513115.1_1_5:14769063-14871556:-|nuORF ENST00000513115.1_1_5:14769063-14871556:-|nuORF MSMS UPN48_class_I_Rep_2 6 566.427001953125 2 566.308544 1130.60253 NaN NaN NaN NaN NaN NaN NaN 98.075 1 101.85 101.35 102.35 3.779 0 0 0 0.40746 1 23299 23299 0.69038 0 1 13105 3659 8328 8334 16207 16207 0.042457631593151746 HYWPLIRF 8 Unmodified _HYWPLIRF_ 0 0 0 ENST00000513115.1_1_5:14769063-14871556:-|nuORF;ENSG00000154122|ENST00000284268|ANKH ENST00000513115.1_1_5:14769063-14871556:-|nuORF ENST00000513115.1_1_5:14769063-14871556:-|nuORF MSMS UPN48_class_I_Rep_3 7 566.30810546875 2 566.308544 1130.60253 NaN NaN NaN NaN NaN NaN NaN 99.542 1 103.43 102.93 103.93 3.8839 0 0 0 0.40746 1 23571 23571 0.69038 0 1 13106 3659 8328 8334 16208 16208 0.042457631593151746 HYWPLIRF 8 Unmodified _HYWPLIRF_ 0 0 0 ENST00000513115.1_1_5:14769063-14871556:-|nuORF;ENSG00000154122|ENST00000284268|ANKH ENST00000513115.1_1_5:14769063-14871556:-|nuORF ENST00000513115.1_1_5:14769063-14871556:-|nuORF MSMS UPN48_class_I_Rep_3 7 566.3088989257812 2 566.308544 1130.60253 NaN NaN NaN NaN NaN NaN NaN 99.71 1 103.56 103.06 104.06 3.8537 0 0 0 0.40746 1 23614 23614 0.69038 0 1 13107 3659 8328 8334 16209 16209 0.042457631593151746 HYWQEDVK 8 Unmodified _HYWQEDVK_ 0 0 0 REV__ENSG00000172985|ENST00000309415|SH3RF3 REV__ENSG00000172985|ENST00000309415|SH3RF3 MSMS UPN48_class_I_Rep_1 5 552.7591552734375 2 552.759081 1103.50361 NaN NaN NaN NaN NaN NaN NaN 76.459 1 79.969 79.469 80.469 3.5102 0 0 0 0.40625 1 18159 18159 2.3027 1.5091 1 + 13108 20467 8329 8335 16210 16210 -0.04400304596265414 HYYCIITW 8 Unmodified _HYYCIITW_ 0 0 0 REV__L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|67|2|anti-sense REV__L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|67|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 549.7601928710938 2 549.757495 1097.50044 0.3892 0.00021397 3.479 0.0019126 3.8682 0.0021266 549.7598327770513 82.648 0.087784 82.648 82.574 82.662 0 10 9 2 0 0 0 0.82752 1 19593 19593 2.5775 0.27475 1 174630 + 13109 26811 8330 8336 16211 16211 -0.044412709746211476 IAAPPPGFRDS 11 Unmodified _IAAPPPGFRDS_ 0 0 0 nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4 nc|ENSG00000169933|Q14CM0|FRMPD4 nc|ENSG00000169933|Q14CM0|FRMPD4 MULTI-MSMS UPN47_class_I_Rep_3 4 564.7981567382812 2 564.29583 1126.57711 -0.083176 -4.6936E-05 2.2552 0.0012726 2.172 0.0012257 564.2972539951156 36.831 0.078987 40.078 40.022 40.101 3.247 6 4 2 0 0 0 0.67264 1 6994 6994 1.1933 0.50296 1 29107 13110 4447 8331 8337 16212 16212 0.018882438462242135 IAAQGPKQ 8 Unmodified _IAAQGPKQ_ 0 0 0 nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE nc|ENSG00000132334|P23469-3|PTPRE nc|ENSG00000132334|P23469-3|PTPRE MULTI-MSMS UPN47_class_I_Rep_1 2 406.7348327636719 2 406.734877 811.455202 -0.49428 -0.00020104 0.60544 0.00024625 0.11116 4.5213E-05 406.73503251103045 23.907 0.67653 27.637 27.347 28.024 3.7298 84 54 2 0 0 0 0.82752 1 3088 3088 2.3027 0 1 95681 13111 2744 8332 8338 16213 16213 0.04193246554518737 IAARKKRNFI 10 Unmodified _IAARKKRNFI_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MSMS UPN48_class_I_Rep_2 6 406.2668151855469 3 406.259413 1215.75641 NaN NaN NaN NaN NaN NaN NaN 32.238 1 35.888 35.388 36.388 3.6497 0 0 0 0.53105 1 4956 4956 1.7423 0 1 13112 3641 8333 8339 16214 16214 0.15716172924840066 IAARWKIL 8 Unmodified _IAARWKIL_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS UPN48_class_I_Rep_3 7 486.31707763671875 2 485.813462 969.612371 0.29394 0.0001428 -1.0141 -0.00049267 -0.72018 -0.00034987 485.8116239754483 68.522 0.33759 72.031 71.861 72.199 3.5094 35 26 2 0 0 0 0.82752 1 15718 15718 2.5775 0 1 123070 + 13113 20293 8334 8340 16215 16215 0.12634951164693575 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(64)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS UPN47_class_I_Rep_1 2 532.2658081054688 2 532.265684 1062.51682 -0.10032 -5.3399E-05 0.27451 0.00014611 0.17419 9.2714E-05 532.2657917424477 27.347 1.0662 31.113 30.62 31.686 3.7662 214 87 3 0 0 0 0.019142 4 4054 3977;4017;4054;4095 63.961 33.736 1 380650 13114 2768 8335 8341 16216;16217;16218;16219 16218 89 -0.011941898085069624 IADMGHLKY 9 Oxidation (M) _IADM(Oxidation (M))GHLKY_ IADM(1)GHLKY IADM(64)GHLKY 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS UPN47_class_I_Rep_2 3 532.2657470703125 2 532.265684 1062.51682 -0.10489 -5.5828E-05 0.26386 0.00014045 0.15898 8.4617E-05 532.2657819370362 27.505 1.3905 31.003 30.529 31.92 3.4986 271 115 3 0 0 0 0.019142 4 4114 4038;4114;4160;4198 63.961 31.844 1 352150 13115 2768 8335 8341 16220;16221;16222;16223 16221 89 -0.011941898085069624 IADRLNVEF 9 Unmodified _IADRLNVEF_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS UPN47_class_I_Rep_1 2 538.7903442382812 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.10568 3 12431 12431;12472;12518 32.786 6.0918 1 312930 13116 1593 8336 8342 16224;16225;16226 16224 0.03144841471953441 IADRLNVEF 9 Unmodified _IADRLNVEF_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS UPN47_class_I_Rep_2 3 538.7902221679688 2 538.790381 1075.56621 0.46808 0.0002522 -1.6932 -0.00091226 -1.2251 -0.00066006 538.790083726859 55.198 1.4163 58.508 57.779 59.195 3.3102 142 78 4 0 0 0 0.10568 1 12527 12527 32.786 2.9451 1 318790 13117 1593 8336 8342 16227 16227 0.03144841471953441 IADRLNVEF 9 Unmodified _IADRLNVEF_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS UPN47_class_I_Rep_3 4 538.790283203125 2 538.790381 1075.56621 0.406 0.00021875 -0.7016 -0.00037801 -0.29559 -0.00015926 538.7900663930279 55.338 1.3768 58.515 57.797 59.174 3.1779 124 83 2 0 0 0 0.062142 1 12615 12615 43.772 7.2662 1 316940 13118 1593 8336 8342 16228 16228 0.03144841471953441 IADTLKWPF 9 Unmodified _IADTLKWPF_ 0 0 0 REV__nc|ENSG00000104133|Q96JI7-2|SPG11 REV__nc|ENSG00000104133|Q96JI7-2|SPG11 MSMS UPN48_class_I_Rep_2 6 545.798095703125 2 545.800217 1089.58588 NaN NaN NaN NaN NaN NaN NaN 57.044 1 60.558 60.058 61.058 3.5142 0 0 0 0.37476 1 12304 12304 6.7232 0.99131 1 + 13119 18249 8337 8343 16229 16229 0.044672174827155686 IAEKPTKFG 9 Unmodified _IAEKPTKFG_ 0 0 0 REV__ENSG00000142534|ENST00000270625|RPS11 REV__ENSG00000142534|ENST00000270625|RPS11 MSMS UPN47_class_I_Rep_2 3 495.7845153808594 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 56.669 1 59.97 59.47 60.47 3.3009 0 0 0 0.38478 1 12991 12991 4.3292 0.73274 1 + 13120 19406 8338 8344 16230 16230 0.0593864444861083 IAELLLRDH 9 Unmodified _IAELLLRDH_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MSMS UPN48_class_I_Rep_2 6 540.300537109375 2 540.314023 1078.61349 NaN NaN NaN NaN NaN NaN NaN 54.35 1 57.931 57.431 58.431 3.5817 0 0 0 0.39518 1 11479 11479 1.8442 0 1 13121 3505 8339 8345 16231 16231 0.0773312074295518 IAEQYESYY 9 Unmodified _IAEQYESYY_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS UPN48_class_I_Rep_1 5 583.2559204101562 2 583.256037 1164.49752 NaN NaN NaN NaN NaN NaN NaN 112.04 1 115.67 115.17 116.17 3.6321 0 0 0 0.40038 1 27183 27183 0.6015 0 1 13122 2592 8340 8346 16232 16232 -0.07814867618412791 IAEYLPRATL 10 Unmodified _IAEYLPRATL_ 0 0 0 REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|30|1|sense REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|30|1|sense MSMS UPN48_class_I_Rep_3 7 573.8322143554688 2 573.829506 1145.64446 NaN NaN NaN NaN NaN NaN NaN 89.81 1 93.64 93.14 94.14 3.8293 0 0 0 0.53105 1 21328 21328 2.9952 1.151 1 + 13123 23539 8341 8347 16233 16233 0.07746274057171831 IAFFIYKRRLN 11 Unmodified _IAFFIYKRRLN_ 0 0 0 nc|ENSG00000205359|Q86UG4-3|SLCO6A1;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1 nc|ENSG00000205359|Q86UG4-3|SLCO6A1 nc|ENSG00000205359|Q86UG4-3|SLCO6A1 MSMS UPN47_class_I_Rep_3 4 480.9544372558594 3 480.95399 1439.84014 NaN NaN NaN NaN NaN NaN NaN 15.801 1 19.166 18.666 19.666 3.3659 0 0 0 0.38417 1 879 879 0.50596 0 1 13124 5559 8342 8348 16234 16234 0.1378128430187644 IAFHMFRK 8 Unmodified _IAFHMFRK_ 0 0 0 L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|9|1|sense L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|9|1|sense L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 524.78759765625 2 525.289297 1048.56404 0.31056 0.00016313 -0.91316 -0.00047968 -0.60261 -0.00031654 525.2887492725961 78.712 0.080551 78.712 78.676 78.757 0 11 9 2 0 0 0 0.72333 1 18442 18442 2.8892 0.31174 1 104950 13125 12234 8343 8349 16235 16235 0.041701342531496266 IAFHMFRK 8 Unmodified _IAFHMFRK_ 0 0 0 L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|9|1|sense L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|9|1|sense L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 524.786865234375 2 525.289297 1048.56404 0.31011 0.00016289 -0.79757 -0.00041896 -0.48747 -0.00025606 525.2888817702412 78.572 0.20723 78.572 78.469 78.676 0 25 18 2 0 0 0 0.72333 1 18404 18404 2.8892 0.82947 1 199330 13126 12234 8343 8349 16236 16236 0.041701342531496266 IAFHWVHMY 9 Unmodified _IAFHWVHMY_ 0 0 0 L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|181|3|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|181|3|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|181|3|anti-sense MSMS UPN47_class_I_Rep_2 3 602.29052734375 2 602.292037 1202.56952 NaN NaN NaN NaN NaN NaN NaN 74.756 1 78.068 77.568 78.568 3.3127 0 0 0 0.39326 1 18430 18430 2.3027 0.24298 1 13127 9677 8344 8350 16237 16237 -0.0236618695503239 IAFRFSRPQN 10 Unmodified _IAFRFSRPQN_ 0 0 0 L1MEc_dup9940|chr9:37167384-37168356:-|3.684067010326737|0.0466484634138495|6.3|151.0|30|3|sense L1MEc_dup9940|chr9:37167384-37168356:-|3.684067010326737|0.0466484634138495|6.3|151.0|30|3|sense L1MEc_dup9940|chr9:37167384-37168356:-|3.684067010326737|0.0466484634138495|6.3|151.0|30|3|sense MSMS UPN48_class_I_Rep_1 5 618.3331909179688 2 618.335821 1234.65709 NaN NaN NaN NaN NaN NaN NaN 61.296 1 64.763 64.263 65.263 3.4678 0 0 0 0.53105 1 13625 13625 1.3295 0.13619 1 13128 13158 8345 8351 16238 16238 0.04914730240102472 IAFVRHFHLKS 11 Unmodified _IAFVRHFHLKS_ 0 0 0 MER6_dup710|chr15:83048628-83049422:-|1.1152714566669997|0.0757365149930389|3.88|150.0|23|2|sense MER6_dup710|chr15:83048628-83049422:-|1.1152714566669997|0.0757365149930389|3.88|150.0|23|2|sense MER6_dup710|chr15:83048628-83049422:-|1.1152714566669997|0.0757365149930389|3.88|150.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.2625732421875 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.68024 1 13157 13157 0.50596 0.051438 1 500210 13129 16150 8346 8352 16239 16239 0.1042415557926688 IAGKRHFQCF 10 Unmodified _IAGKRHFQCF_ 0 0 0 HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|27|2|sense HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|27|2|sense HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 603.814208984375 2 603.813667 1205.61278 NaN NaN NaN NaN NaN NaN NaN 13.995 1 13.995 13.495 14.495 0 0 0 0 0.53105 1 524 524 1.4819 0 1 13130 8165 8347 8353 16240 16240 0.018200028222281617 IAHWILDL 8 Unmodified _IAHWILDL_ 0 0 0 AluJb_dup115312|chr19:14738383-14738677:-|1.396010151442188|0.033696275106419|5.37|151.0|12|1|anti-sense AluJb_dup115312|chr19:14738383-14738677:-|1.396010151442188|0.033696275106419|5.37|151.0|12|1|anti-sense AluJb_dup115312|chr19:14738383-14738677:-|1.396010151442188|0.033696275106419|5.37|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7817077636719 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 31.517 1 35.051 34.551 35.551 3.5342 0 0 0 0.40604 1 4673 4673 2.5775 0.73324 1 13131 24 8348 8354 16241 16241 0.05850965656816243 IAIKKKKKHR 10 Unmodified _IAIKKKKKHR_ 0 0 0 L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 625.4317016601562 2 625.432599 1248.85064 0.55496 0.00034709 -1.1846 -0.00074088 -0.62962 -0.00039378 625.4318639999456 107.89 0.21444 111.53 111.34 111.56 3.6355 21 15 3 0 0 0 0.56486 1 26459 26459 0.40072 0 1 3271300 13132 10155 8349 8355 16242 16242 0.23617311746966152 IAIKKKKKHR 10 Unmodified _IAIKKKKKHR_ 0 0 0 L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 625.9337158203125 2 625.432599 1248.85064 0.51231 0.00032041 -0.89203 -0.00055791 -0.37972 -0.00023749 625.4320194585013 108.26 0.27481 111.8 111.65 111.93 3.5382 41 28 3 0 0 0 0.56486 1 26492 26492 0.40072 0 1 4616800 13133 10155 8349 8355 16243 16243 0.23617311746966152 IAIKKKKKHR 10 Unmodified _IAIKKKKKHR_ 0 0 0 L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 625.4324340820312 2 625.432599 1248.85064 NaN NaN NaN NaN NaN NaN NaN 108.29 1 111.92 111.42 112.42 3.6313 0 0 0 0.53105 1 26195 26195 0.40072 0.40072 1 13134 10155 8349 8355 16244 16244 0.23617311746966152 IAIKVINIRGV 11 Unmodified _IAIKVINIRGV_ 0 0 0 REV__L1PA3_dup1203|chr2:135480619-135484178:-|2.450865615099433|0.2334960194597539|3.39|151.0|96|3|sense REV__L1PA3_dup1203|chr2:135480619-135484178:-|2.450865615099433|0.2334960194597539|3.39|151.0|96|3|sense MSMS UPN46_class_I_Rep_3 1 598.3975830078125 2 598.39789 1194.78123 NaN NaN NaN NaN NaN NaN NaN 75.617 1 75.617 75.117 76.117 0 0 0 0 0.38417 1 17592 17592 0 0 1 + 13135 29508 8350 8356 16245 16245 0.19162808007513377 IAILRQEI 8 Unmodified _IAILRQEI_ 0 0 0 ENST00000511745.1_1_4:49504952-49506338:-|nuORF;nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P;nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1 ENST00000511745.1_1_4:49504952-49506338:-|nuORF ENST00000511745.1_1_4:49504952-49506338:-|nuORF MSMS UPN47_class_I_Rep_1 2 478.30072021484375 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 63.015 1 66.375 65.875 66.875 3.3595 0 0 0 0.33644 1 14886 14886 25.399 2.663 1 13136 5780 8351 8357 16246 16246 0.10710637202555517 IAISRTPVL 9 Unmodified _IAISRTPVL_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MSMS UPN46_class_I_Rep_3 1 485.3062744140625 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 55.185 1 55.185 54.685 55.685 0 0 0 0 0.064572 1 11990 11990 32.786 5.902 1 13137 4196 8352 8358 16247 16247 0.11630923719599195 IAKAIRPRR 9 Unmodified _IAKAIRPRR_ 0 0 0 REV__L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|31|2|sense REV__L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 540.8594360351562 2 540.859267 1079.70398 NaN NaN NaN NaN NaN NaN NaN 38.46 1 38.46 37.96 38.96 0 0 0 0 0.4007 1 7325 7325 0.52476 0 1 + 13138 24992 8353 8359 16248 16248 0.16731634581879007 IAKIQEEF 8 Unmodified _IAKIQEEF_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3 REV__nc|ENSG00000182670|P53804-3|TTC3 MULTI-MSMS UPN47_class_I_Rep_3 4 489.26910400390625 2 489.26875 976.522947 0.20198 9.8825E-05 -0.16346 -7.9974E-05 0.038528 1.885E-05 489.2686212626811 76.701 0.72128 79.97 79.651 80.372 3.269 113 79 2 0 0 0 0.82752 1 19029 19029 4.756 0 1 120490 + 13139 20761 8354 8360 16249 16249 0.03374651694662134 IAKKISILA 9 Unmodified _IAKKISILA_ 0 0 0 REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|109|2|anti-sense REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|109|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.8291015625 2 478.828778 955.643003 0.10924 5.2305E-05 0.15251 7.3028E-05 0.26175 0.00012533 478.82874987371054 49.327 1.17 52.852 52.484 53.654 3.5246 183 81 3 0 0 0 0.11683 2 9926 9926;10101 30.637 1.555 1 596790 + 13140 26058 8355 8361 16250;16251 16250 0.16340684759097712 IAKKISILA 9 Unmodified _IAKKISILA_ 0 0 0 REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|109|2|anti-sense REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|109|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.82843017578125 2 478.828778 955.643003 0.16611 7.9537E-05 0.040829 1.955E-05 0.20694 9.9087E-05 478.82875497887716 49.275 1.1715 52.992 52.432 53.604 3.7175 135 74 2 0 0 0 0.11683 2 9981 9929;9981 30.637 2.8631 1 342980 + 13141 26058 8355 8361 16252;16253 16253 0.16340684759097712 IAKKISILA 9 Unmodified _IAKKISILA_ 0 0 0 REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|109|2|anti-sense REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|109|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.8288269042969 2 478.828778 955.643003 0.12453 5.9629E-05 0.034812 1.6669E-05 0.15934 7.6297E-05 478.8287331122464 49.194 0.44456 52.823 52.421 52.866 3.6291 68 34 3 0 0 0 0.11683 1 9833 9833 30.637 1.555 1 371120 + 13142 26058 8355 8361 16254 16254 0.16340684759097712 IAKLMVEL 8 Oxidation (M) _IAKLM(Oxidation (M))VEL_ IAKLM(1)VEL IAKLM(79)VEL 0 0 1 ENST00000508451.1_1_5:10250422-10254994:+|nuORF;ENSG00000150753|ENST00000280326|CCT5 ENST00000508451.1_1_5:10250422-10254994:+|nuORF ENST00000508451.1_1_5:10250422-10254994:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 466.77764892578125 2 466.777896 931.54124 0.0076229 3.5582E-06 -0.29326 -0.00013689 -0.28564 -0.00013333 466.77766400315426 52.082 1.1363 55.641 55.236 56.372 3.5585 131 83 3 0 0 0 0.82752 2 11546 11546;11637 78.728 22.551 1 325790 13143 3570 8356 8362 16255;16256 16255 120 0.07273070345013366 IAKLMVEL 8 Oxidation (M) _IAKLM(Oxidation (M))VEL_ 0 0 1 ENST00000508451.1_1_5:10250422-10254994:+|nuORF;ENSG00000150753|ENST00000280326|CCT5 ENST00000508451.1_1_5:10250422-10254994:+|nuORF ENST00000508451.1_1_5:10250422-10254994:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 466.777896 931.54124 0.01334 6.2267E-06 -0.77891 -0.00036358 -0.76557 -0.00035735 466.7774660677689 52.225 0.056961 55.43 55.406 55.463 3.2055 -0.10512 -0.00043951 NaN 78.728 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 44305 13144 3570 8356 8362 120 0.07273070345013366 IAKWVIRRHT 10 Unmodified _IAKWVIRRHT_ 0 0 0 ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|2|intron;ENSG00000187605.15,TET3,chr2,+,I9.1,74090048,74092901|83|8.22|1|intron;ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|1|intron;ENSG00000187605.15,TET3,chr2,+,I11.1,74093667,74099275|76|9.65|3|intron;nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3 ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|2|intron ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|2|intron MSMS UPN48_class_I_Rep_2 6 640.3932495117188 2 640.390931 1278.76731 NaN NaN NaN NaN NaN NaN NaN 52.008 1 55.647 55.147 56.147 3.639 0 0 0 0.53105 1 10769 10769 1.3295 0.13619 1 13145 5194 8357 8363 16257 16257 0.13907575299117525 IALFHIMHK 9 Unmodified _IALFHIMHK_ 0 0 0 HAL1M8_dup16|chr1:45645188-45645766:-|1.8928388635954712|0.2949112457962871|2.68|151.0|27|1|anti-sense HAL1M8_dup16|chr1:45645188-45645766:-|1.8928388635954712|0.2949112457962871|2.68|151.0|27|1|anti-sense HAL1M8_dup16|chr1:45645188-45645766:-|1.8928388635954712|0.2949112457962871|2.68|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.319580078125 2 555.318054 1108.62156 NaN NaN NaN NaN NaN NaN NaN 95.255 1 99.035 98.535 99.535 3.7804 0 0 0 0.39428 1 22644 22644 2.0598 0.21551 1 13146 7937 8358 8364 16258 16258 0.07158976458731559 IALGPGLRW 9 Unmodified _IALGPGLRW_ 0 0 0 L1MEi_dup134|chr1:100507980-100508906:-|1.9419005329516592|0.0968087473631398|4.33|151.0|21|3|sense L1MEi_dup134|chr1:100507980-100508906:-|1.9419005329516592|0.0968087473631398|4.33|151.0|21|3|sense L1MEi_dup134|chr1:100507980-100508906:-|1.9419005329516592|0.0968087473631398|4.33|151.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 491.7957458496094 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.078 1 63.351 62.851 63.851 3.2731 0 0 0 0.39518 1 14032 14032 1.8442 1.0506 1 13147 13449 8359 8365 16259 16259 0.08446074267988024 IALHILYI 8 Unmodified _IALHILYI_ 0 0 0 ENSG00000167769|ENST00000301452|ACER1 ENSG00000167769|ENST00000301452|ACER1 ENSG00000167769|ENST00000301452|ACER1 MSMS UPN47_class_I_Rep_3 4 478.30035400390625 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 63.426 1 66.596 66.096 67.096 3.1698 0 0 0 0.4032 1 15104 15104 6.3541 0 1 13148 4328 8360 8366 16260 16260 0.11112726696262598 IALHILYI 8 Unmodified _IALHILYI_ 0 0 0 ENSG00000167769|ENST00000301452|ACER1 ENSG00000167769|ENST00000301452|ACER1 ENSG00000167769|ENST00000301452|ACER1 MSMS UPN47_class_I_Rep_3 4 478.30035400390625 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 63.466 1 66.636 66.136 67.136 3.1698 0 0 0 0.4032 1 15115 15115 6.3541 0 1 13149 4328 8360 8366 16261 16261 0.11112726696262598 IALHRIFLEIE 11 Unmodified _IALHRIFLEIE_ 0 0 0 Tigger1_dup5697|chr7:76556077-76556515:+|1.0345274201155357|0.062703814077443|4.04|151.0|10|3|sense Tigger1_dup5697|chr7:76556077-76556515:+|1.0345274201155357|0.062703814077443|4.04|151.0|10|3|sense Tigger1_dup5697|chr7:76556077-76556515:+|1.0345274201155357|0.062703814077443|4.04|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 451.9326171875 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 93.401 1 93.401 92.901 93.901 0 0 0 0 0.38417 1 22635 22635 2.6312 0.19645 1 13150 33131 8361 8367 16262 16262 0.11934182936761317 IALHYPLH 8 Unmodified _IALHYPLH_ 0 0 0 REV__L1ME1_dup17003|chr9:120837631-120838297:+|1.116777237513688|0.0600807468019076|4.22|151.0|1|1|sense REV__L1ME1_dup17003|chr9:120837631-120838297:+|1.116777237513688|0.0600807468019076|4.22|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 482.2721862792969 2 482.27417 962.533787 NaN NaN NaN NaN NaN NaN NaN 90.009 1 93.634 93.134 94.134 3.6255 0 0 0 0.40738 1 21631 21631 0.79363 0 1 + 13151 27636 8362 8368 16263 16263 0.051020988596064853 IALLAQPTR 9 Unmodified _IALLAQPTR_ 0 0 0 REV__ENST00000490812.5_1_2:131128247-131129758:+|nuORF REV__ENST00000490812.5_1_2:131128247-131129758:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 491.80535888671875 2 491.805834 981.597115 -0.10192 -5.0125E-05 -0.22245 -0.0001094 -0.32437 -0.00015953 491.8057040505373 30.722 0.1009 34.204 34.158 34.259 3.4821 11 8 2 0 0 0 0.50015 1 5112 5112 0.6015 0 1 43000 + 13152 17824 8363 8369 16264 16264 0.10558039576835654 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.30731201171875 3 450.307481 1347.90061 0.010529 4.7413E-06 0.19622 8.836E-05 0.20675 9.3101E-05 450.3075787368517 44.935 0.43919 48.448 48.155 48.595 3.5132 50 31 3 0 0 0 0.68478 2 8636 8571;8636 0.094841 0.094841 1 121450 + 13153 26421 8364 8370 16265;16266 16266 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.3075866699219 3 450.307481 1347.90061 0.0082793 3.7282E-06 0.45657 0.0002056 0.46485 0.00020932 450.30769424863865 45.319 0.32819 48.835 48.612 48.94 3.5162 35 24 2 0 0 0 0.68491 1 8736 8736 0.08335 0.08335 1 105610 + 13154 26421 8364 8370 16267 16267 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 450.53619384765625 3 450.307481 1347.90061 0.08203 3.6939E-05 0.32062 0.00014438 0.40265 0.00018132 450.30775378518194 42.85 0.16883 46.491 46.397 46.566 3.6415 19 13 2 0 0 0 0.68478 1 7879 7879 0.094841 0.011491 1 43051 + 13155 26421 8364 8370 16268 16268 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 450.30767822265625 3 450.307481 1347.90061 0.08483 3.8199E-05 0.38895 0.00017515 0.47378 0.00021335 450.30762255747453 44.775 0.24511 48.412 48.285 48.53 3.6372 26 17 2 0 0 0 0.68478 1 8475 8475 0.094841 0.094841 1 145040 + 13156 26421 8364 8370 16269 16269 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MSMS UPN48_class_I_Rep_3 7 450.3077087402344 3 450.307481 1347.90061 NaN NaN NaN NaN NaN NaN NaN 44.171 1 47.809 47.309 48.309 3.6385 0 0 0 0.38417 1 8310 8310 0.094841 0 1 + 13157 26421 8364 8370 16270 16270 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 450.307481 1347.90061 0.0082793 3.7282E-06 0.45657 0.0002056 0.46485 0.00020932 450.30769424863865 45.319 0.32819 48.835 48.612 48.94 3.5162 0.075405 -0.00015361 NaN 0.08335 35 24 2 NaN NaN NaN NaN 0 NaN NaN 0 105610 + 13158 26421 8364 8370 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 450.307481 1347.90061 0.08483 3.8199E-05 0.38895 0.00017515 0.47378 0.00021335 450.30762255747453 44.775 0.24511 48.412 48.285 48.53 3.6372 -0.018098 0.00016156 NaN 0.094841 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 145040 + 13159 26421 8364 8370 0.2405800163226104 IALLKKFKFIK 11 Unmodified _IALLKKFKFIK_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 450.307481 1347.90061 0.085235 3.8382E-05 0.82599 0.00037195 0.91122 0.00041033 450.3078030358463 45.047 0.34957 48.684 48.509 48.858 3.6372 -0.075405 0.00034544 NaN 0.08335 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 114330 + 13160 26421 8364 8370 0.2405800163226104 IALLQATPF 9 Unmodified _IALLQATPF_ 0 0 0 REV__Charlie7_dup2254|chr9:131719139-131719484:-|1.7797980815121417|0.0209625364181873|6.41|151.0|16|2|anti-sense REV__Charlie7_dup2254|chr9:131719139-131719484:-|1.7797980815121417|0.0209625364181873|6.41|151.0|16|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.28955078125 2 487.289485 972.564418 0.24676 0.00012024 0.034657 1.6888E-05 0.28141 0.00013713 487.289395923237 57.543 0.71383 61.037 60.603 61.317 3.4942 112 62 2 0 0 0 0.36392 1 12430 12430 10.074 0 1 306960 + 13161 17395 8365 8371 16271 16271 0.0770383245398989 IALLQATPF 9 Unmodified _IALLQATPF_ 0 0 0 REV__Charlie7_dup2254|chr9:131719139-131719484:-|1.7797980815121417|0.0209625364181873|6.41|151.0|16|2|anti-sense REV__Charlie7_dup2254|chr9:131719139-131719484:-|1.7797980815121417|0.0209625364181873|6.41|151.0|16|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.28961181640625 2 487.289485 972.564418 0.15729 7.6646E-05 0.15739 7.6694E-05 0.31468 0.00015334 487.28942271584697 57.357 0.72713 60.888 60.521 61.249 3.5317 111 67 2 0 0 0 0.26948 1 12305 12305 15.847 0 1 285150 + 13162 17395 8365 8371 16272 16272 0.0770383245398989 IALSDQVKL 9 Unmodified _IALSDQVKL_ 0 0 0 REV__L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|79|3|sense REV__L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|79|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.7980651855469 2 493.797675 985.580796 0.34697 0.00017133 -0.082956 -4.0964E-05 0.26402 0.00013037 493.79757620081125 54.85 1.2417 58.168 57.899 59.141 3.3187 156 69 3 0 0 0 0.17897 1 12384 12384 22.736 0 1 699990 + 13163 24138 8366 8372 16273 16273 0.08742913620085346 IALSDQVKL 9 Unmodified _IALSDQVKL_ 0 0 0 REV__L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|79|3|sense REV__L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|79|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.7976379394531 2 493.797675 985.580796 0.20036 9.8939E-05 0.080369 3.9686E-05 0.28073 0.00013862 493.7976461210599 55.184 1.1607 58.362 57.922 59.083 3.1779 178 71 3 0 0 0 0.10568 1 12687 12687 32.786 0 1 974830 + 13164 24138 8366 8372 16274 16274 0.08742913620085346 IALSLPRVT 9 Unmodified _IALSLPRVT_ 0 0 0 REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|119|3|sense REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|119|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 484.77435302734375 2 485.30821 968.601866 0.18571 9.0127E-05 -0.12131 -5.8874E-05 0.064399 3.1253E-05 485.3079126160234 49.348 0.20127 53.066 52.896 53.097 3.7175 15 13 2 0 0 0 0.12099 1 9944 9944 6.7232 0 1 83212 + 13165 23603 8367 8373 16275 16275 0.11630923719599195 IALSLPRVT 9 Unmodified _IALSLPRVT_ 0 0 0 REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|119|3|sense REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|119|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 485.30821 968.601866 0.13056 6.336E-05 -0.045817 -2.2235E-05 0.084739 4.1125E-05 485.3081755001835 49.571 0.56929 53.2 52.942 53.512 3.6291 0.066983 1.9659E-05 NaN 14.838 47 36 2 NaN NaN NaN NaN 0 NaN NaN 0 114450 + 13166 23603 8367 8373 0.11630923719599195 IALVAIVKK 9 Unmodified _IALVAIVKK_ 0 0 0 L1MD2_dup7388|chr10:101623401-101624280:+|1.7736552928064924|0.290395533321406|2.61|151.0|3|1|sense L1MD2_dup7388|chr10:101623401-101624280:+|1.7736552928064924|0.290395533321406|2.61|151.0|3|1|sense L1MD2_dup7388|chr10:101623401-101624280:+|1.7736552928064924|0.290395533321406|2.61|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 478.2635803222656 2 477.839146 953.663738 0.13422 6.4137E-05 -0.24282 -0.00011603 -0.1086 -5.1893E-05 477.8389967876996 53.336 0.82021 56.855 56.474 57.294 3.5192 86 58 2 0 0 0 0.12034 1 11267 11267 7.2892 0 1 229000 13167 12029 8368 8374 16276 16276 0.18505275138738853 IALVAIVKK 9 Unmodified _IALVAIVKK_ 0 0 0 L1MD2_dup7388|chr10:101623401-101624280:+|1.7736552928064924|0.290395533321406|2.61|151.0|3|1|sense L1MD2_dup7388|chr10:101623401-101624280:+|1.7736552928064924|0.290395533321406|2.61|151.0|3|1|sense L1MD2_dup7388|chr10:101623401-101624280:+|1.7736552928064924|0.290395533321406|2.61|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 477.839146 953.663738 0.075215 3.5941E-05 -0.088562 -4.2318E-05 -0.013347 -6.3777E-06 477.8390297897605 53.104 0.53572 56.687 56.482 57.018 3.5836 -0.084072 8.3147E-05 NaN 7.2892 58 36 2 NaN NaN NaN NaN 0 NaN NaN 0 163840 13168 12029 8368 8374 0.18505275138738853 IAPAPPSTLS 10 Unmodified _IAPAPPSTLS_ 0 0 0 ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|5|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|1|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|10|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|4|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|3|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|7|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|9|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|6|intron;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130 ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron MULTI-MSMS UPN46_class_I_Rep_3 1 477.2680358886719 2 477.26875 952.522947 0.25911 0.00012367 -2.1179 -0.0010108 -1.8588 -0.00088713 477.2674935149322 107.95 0.15369 107.95 107.9 108.05 0 10 8 2 0 0 0 0.53654 1 26361 26361 7.2892 0.56607 1 4241400 13169 2983 8369 8375 16277 16277 0.04478651694671498 IAPAPPSTLS 10 Unmodified _IAPAPPSTLS_ 0 0 0 ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|5|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|1|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|10|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|4|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|3|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|7|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|9|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|6|intron;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130 ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron MULTI-MSMS UPN47_class_I_Rep_3 4 477.2678527832031 2 477.26875 952.522947 0.11407 5.4441E-05 -0.93522 -0.00044635 -0.82115 -0.00039191 477.26815498981205 107.79 0.086617 111.33 111.27 111.36 3.5382 15 11 2 0 0 0 0.53654 1 26320 26320 7.2892 1.0834 1 2565200 13170 2983 8369 8375 16278 16278 0.04478651694671498 IAPAPPSTLS 10 Unmodified _IAPAPPSTLS_ 0 0 0 ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|5|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|1|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|10|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|4|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|3|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|7|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|9|intron;ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|6|intron;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130 ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|8|intron MULTI-MSMS UPN48_class_I_Rep_2 6 477.26849365234375 2 477.26875 952.522947 0.22647 0.00010809 -0.39338 -0.00018775 -0.16691 -7.9659E-05 477.26844943919554 107.78 0.082558 111.45 111.39 111.47 3.6783 15 8 2 0 0 0 0.55983 1 25485 25485 3.9444 0 1 5014700 13171 2983 8369 8375 16279 16279 0.04478651694671498 IAPIKRLA 8 Unmodified _IAPIKRLA_ 0 0 0 REV__ENST00000495918.1_1_1:183103830-183107010:+|nuORF REV__ENST00000495918.1_1_1:183103830-183107010:+|nuORF MSMS UPN47_class_I_Rep_2 3 441.2997741699219 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 31.835 1 35.304 34.804 35.804 3.4691 0 0 0 0.36705 1 5439 5439 18.135 0 1 + 13172 19159 8370 8376 16280 16280 0.14075262273354383 IAPNHGLTF 9 Unmodified _IAPNHGLTF_ 0 0 0 nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3 nc|ENSG00000185946|Q96LT9-2|RNPC3 nc|ENSG00000185946|Q96LT9-2|RNPC3 MULTI-MSMS UPN47_class_I_Rep_2 3 485.26153564453125 2 485.261259 968.507966 0.28303 0.00013735 -0.2544 -0.00012345 0.028635 1.3895E-05 485.26106682926365 51.415 0.76382 54.753 54.277 55.041 3.3386 70 38 2 0 0 0 0.43153 1 11420 11420 6.2058 1.4498 1 143160 13173 5130 8371 8377 16281 16281 0.0224520461732709 IAPPFIQPQ 9 Unmodified _IAPPFIQPQ_ 0 0 0 L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 505.7870178222656 2 505.78711 1009.55967 0.2481 0.00012549 -0.26054 -0.00013178 -0.012438 -6.2908E-06 505.7869750986289 57.366 0.56602 60.657 60.432 60.998 3.2912 85 46 2 0 0 0 0.40174 2 13217 13217;13243 7.9102 7.9102 1 143480 13174 8628 8372 8378 16282;16283 16282 0.055269483112283524 IAPPFIQPQ 9 Unmodified _IAPPFIQPQ_ 0 0 0 L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 505.78643798828125 2 505.78711 1009.55967 0.16936 8.5659E-05 -0.14098 -7.1307E-05 0.028375 1.4352E-05 505.78700220863345 57.476 0.53692 60.644 60.455 60.992 3.1681 86 45 2 0 0 0 0.40174 1 13377 13377 7.9102 7.9102 1 129490 13175 8628 8372 8378 16284 16284 0.055269483112283524 IAPPFIQPQ 9 Unmodified _IAPPFIQPQ_ 0 0 0 L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense L1M1_dup8164|chr14:45144433-45145374:-|1.0497610298242854|0.024749876168811|5.41|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 505.78711 1009.55967 0.19853 0.00010042 -1.7729 -0.00089669 -1.5743 -0.00079627 505.78603951296947 56.947 0.10743 60.404 60.32 60.427 3.4572 -0.16404 -0.0014929 NaN 7.9102 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 83950 13176 8628 8372 8378 0.055269483112283524 IAQIEMLPDAL 11 Unmodified _IAQIEMLPDAL_ 0 0 0 REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|154|2|anti-sense REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|154|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 607.3268432617188 2 607.328482 1212.64241 0.53434 0.00032452 1.0957 0.00066544 1.63 0.00098996 607.3290367076186 54.054 0.55661 54.054 53.913 54.47 0 91 58 2 0 0 0 0.66092 1 11673 11673 0.96228 0 1 314390 + 13177 27840 8373 8379 16285 16285 0.04459477257069011 IAQYHHQRW 9 Unmodified _IAQYHHQRW_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN47_class_I_Rep_1 2 619.8118896484375 2 619.812513 1237.61047 NaN NaN NaN NaN NaN NaN NaN 52.724 1 56.282 55.782 56.782 3.5585 0 0 0 0.39518 1 11755 11755 1.8442 0 1 + 13178 21033 8374 8380 16286 16286 0.0011729040879799868 IARFFKLH 8 Unmodified _IARFFKLH_ 0 0 0 ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C ENSG00000110880|ENST00000261401|CORO1C ENSG00000110880|ENST00000261401|CORO1C MSMS UPN48_class_I_Rep_2 6 516.3133544921875 2 516.311087 1030.60762 NaN NaN NaN NaN NaN NaN NaN 94.627 1 98.403 97.903 98.903 3.7761 0 0 0 0.40746 1 22495 22495 0.69038 0 1 13179 1955 8375 8381 16287 16287 0.09354067021945411 IARFHLYKKMK 11 Unmodified _IARFHLYKKMK_ 0 0 0 AluJr_dup48534|chr10:49973395-49973685:+|1.009616650369987|0.1829130369069416|2.46|151.0|5|2|sense;AluJr_dup48497|chr10:48046606-48046897:-|1.2348258235728713|0.2558539164330696|2.27|149.0|10|3|sense AluJr_dup48534|chr10:49973395-49973685:+|1.009616650369987|0.1829130369069416|2.46|151.0|5|2|sense AluJr_dup48534|chr10:49973395-49973685:+|1.009616650369987|0.1829130369069416|2.46|151.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 479.2957458496094 3 478.951592 1433.83295 NaN NaN NaN NaN NaN NaN NaN 13.689 1 17.077 16.577 17.577 3.388 0 0 0 0.38417 1 388 388 0.45452 0.35968 1 13180 156 8376 8382 16288 16288 0.1333822842977952 IARVEDVF 8 Unmodified _IARVEDVF_ 0 0 0 REV__ENSG00000152464|ENST00000378197|RPP38 REV__ENSG00000152464|ENST00000378197|RPP38 MULTI-MSMS UPN47_class_I_Rep_3 4 474.7607421875 2 474.761092 947.507631 -0.32869 -0.00015605 -1.0981 -0.00052133 -1.4268 -0.00067738 474.76101280312105 42.459 0.99269 45.699 45.236 46.228 3.2394 114 69 2 0 0 0 0.82752 1 8702 8702 11.64 0 1 151710 + 13181 19681 8377 8383 16289 16289 0.03177784897479796 IARVQLLAL 9 Unmodified _IARVQLLAL_ 0 0 0 REV__nc|ENSG00000156515|P19367-4|HK1 REV__nc|ENSG00000156515|P19367-4|HK1 MULTI-MSMS UPN47_class_I_Rep_2 3 498.83184814453125 2 498.831852 995.649151 -0.16827 -8.3937E-05 0.20366 0.00010159 0.035393 1.7655E-05 498.8318651982307 40.453 0.96758 43.824 43.314 44.281 3.3712 147 66 3 0 0 0 0.28552 1 8129 8129 14.838 0 1 299970 + 13182 19797 8378 8384 16290 16290 0.15115202990614307 IARVQLLAL 9 Unmodified _IARVQLLAL_ 0 0 0 REV__nc|ENSG00000156515|P19367-4|HK1 REV__nc|ENSG00000156515|P19367-4|HK1 MULTI-MSMS UPN47_class_I_Rep_3 4 499.3332824707031 2 498.831852 995.649151 -0.22133 -0.00011041 0.21805 0.00010877 -0.0032865 -1.6394E-06 498.83189095768756 40.791 0.95873 44.028 43.426 44.384 3.2372 133 61 3 0 0 0 0.41259 1 8063 8063 7.2892 0 1 314910 + 13183 19797 8378 8384 16291 16291 0.15115202990614307 IASDVWSFGV 10 Unmodified _IASDVWSFGV_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS UPN48_class_I_Rep_1 5 540.7725830078125 2 540.771657 1079.52876 0.41356 0.00022364 -0.049834 -2.6949E-05 0.36373 0.00019669 540.7715592423566 77.079 0.6363 80.589 80.29 80.926 3.5102 109 62 2 0 0 0 0.51003 3 18293 18257;18293;18325 10.824 0.75 1 267190 13184 3932 8379 8385 16292;16293;16294 16293 -0.007822497936558648 IASDVWSFGV 10 Unmodified _IASDVWSFGV_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS UPN48_class_I_Rep_2 6 540.772216796875 2 540.771657 1079.52876 0.47155 0.000255 -0.030344 -1.6409E-05 0.44121 0.00023859 540.7715331385785 76.916 0.64076 80.528 80.232 80.872 3.6116 138 64 3 0 0 0 0.51003 2 18144 18144;18181 10.824 10.824 1 218150 13185 3932 8379 8385 16295;16296 16295 -0.007822497936558648 IASDVWSFGV 10 Unmodified _IASDVWSFGV_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS UPN48_class_I_Rep_3 7 540.7719116210938 2 540.771657 1079.52876 0.58198 0.00031472 -0.1888 -0.0001021 0.39318 0.00021262 540.7714338314676 76.913 0.68426 80.515 80.183 80.868 3.6016 119 63 3 0 0 0 0.51003 1 18114 18114 10.824 0.75 1 265750 13186 3932 8379 8385 16297 16297 -0.007822497936558648 IASLCFLEV 9 Unmodified _IASLCFLEV_ 0 0 0 L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|61|1|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|61|1|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_3 4 497.7704162597656 2 497.767529 993.520504 NaN NaN NaN NaN NaN NaN NaN 34.542 1 37.806 37.306 38.306 3.2639 0 0 0 0.39518 1 6291 6291 1.8442 0 1 13187 9980 8380 8386 16298 16298 0.023484799653374466 IASNPAQASVP 11 Unmodified _IASNPAQASVP_ 0 0 0 REV__ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron REV__ENSG00000136715.19,SAP130,chr2,-,I4.1,128016548,128017679|26|4.08|2|intron MSMS UPN48_class_I_Rep_2 6 527.7802734375 2 527.780013 1053.54547 NaN NaN NaN NaN NaN NaN NaN 32.067 1 35.708 35.208 36.208 3.641 0 0 0 0.38417 1 4907 4907 2.086 0.43339 1 + 13188 19196 8381 8387 16299 16299 0.02084251092287559 IASTAYLELF 10 Unmodified _IASTAYLELF_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MULTI-MSMS UPN48_class_I_Rep_2 6 564.302490234375 2 564.30279 1126.59103 0.49077 0.00027694 0.041821 2.36E-05 0.53259 0.00030054 564.3026907276014 89.322 0.34396 93.06 92.822 93.166 3.7379 66 36 3 0 0 0 0.27684 1 21264 21264 36.127 0 1 165050 13189 917 8382 8388 16300 16300 0.03279476554644134 IASTAYLELF 10 Unmodified _IASTAYLELF_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MULTI-MSMS UPN48_class_I_Rep_3 7 564.3036499023438 2 564.30279 1126.59103 0.45054 0.00025424 0.25701 0.00014503 0.70755 0.00039927 564.3028396915796 89.521 0.16933 93.351 93.218 93.387 3.8293 29 19 2 0 0 0 0.27684 1 21252 21252 36.127 0 1 96843 13190 917 8382 8388 16301 16301 0.03279476554644134 IASTAYLELF 10 Unmodified _IASTAYLELF_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MSMS UPN48_class_I_Rep_3 7 564.3028564453125 2 564.30279 1126.59103 NaN NaN NaN NaN NaN NaN NaN 89.357 1 93.186 92.686 93.686 3.8293 0 0 0 0.53105 1 21211 21211 43.858 0 1 13191 917 8382 8388 16302 16302 0.03279476554644134 IASTAYLELF 10 Unmodified _IASTAYLELF_ 0 0 0 nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B nc|ENSG00000051009|Q8N612-3|FHIP1B MSMS UPN48_class_I_Rep_3 7 564.27197265625 2 564.30279 1126.59103 NaN NaN NaN NaN NaN NaN NaN 89.729 1 93.559 93.059 94.059 3.8293 0 0 0 0.53105 1 21308 21308 8.7454 0 1 13192 917 8382 8388 16303 16303 0.03279476554644134 IATAGKDFI 9 Unmodified _IATAGKDFI_ 0 0 0 REV__L1M4_dup18435|chr17:78894511-78894998:+|1.6378885642205516|0.0304172998554379|5.75|151.0|6|2|sense REV__L1M4_dup18435|chr17:78894511-78894998:+|1.6378885642205516|0.0304172998554379|5.75|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 468.2633056640625 2 468.263468 934.512382 -0.35678 -0.00016707 0.0036808 1.7236E-06 -0.3531 -0.00016534 468.2634091897279 36.973 0.68515 40.372 40.093 40.778 3.3988 74 51 2 0 0 0 0.46869 1 6993 6993 3.9444 0 1 98681 + 13193 24405 8383 8389 16304 16304 0.04250669040231969 IATRRVSMKT 10 Unmodified _IATRRVSMKT_ 0 0 0 REV__ENST00000451119.6_1_14:21572679-21572727:-|nuORF REV__ENST00000451119.6_1_14:21572679-21572727:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 582.40869140625 2 581.839882 1161.66521 0.51633 0.00030042 -1.3967 -0.00081267 -0.8804 -0.00051225 581.8387804268514 108.98 0.37953 108.98 108.85 109.23 0 28 20 2 0 0 0 0.4561 2 26734 26734;26784 15.248 5.8654 1 4442000 + 13194 22387 8384 8390 16305;16306 16305 0.09084541165179871 IATRRVSMKT 10 Unmodified _IATRRVSMKT_ 0 0 0 REV__ENST00000451119.6_1_14:21572679-21572727:-|nuORF REV__ENST00000451119.6_1_14:21572679-21572727:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 582.40869140625 2 581.839882 1161.66521 0.51633 0.00030042 -1.3967 -0.00081267 -0.8804 -0.00051225 581.8387804268514 108.98 0.37953 108.98 108.85 109.23 0 28 20 2 0 0 0 0.84575 1 26734 26734 15.248 5.8654 1 4442000 + 13195 22387 8384 8390 16307 16307 0.09084541165179871 IAVIRFETY 9 Unmodified _IAVIRFETY_ 0 0 0 REV__Charlie10_dup536|chr7:65910794-65911582:-|1.1686019011251478|0.0050187746263081|7.86|149.0|6|1|sense REV__Charlie10_dup536|chr7:65910794-65911582:-|1.1686019011251478|0.0050187746263081|7.86|149.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 556.2974243164062 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 101.75 1 105.48 104.98 105.98 3.7252 0 0 0 0.39598 1 24125 24125 1.6526 0 1 + 13196 17279 8385 8391 16308 16308 0.0564660251143323 IAVSLAWLT 9 Unmodified _IAVSLAWLT_ 0 0 0 REV__nc|ENSG00000181856|P14672-2|SLC2A4 REV__nc|ENSG00000181856|P14672-2|SLC2A4 MULTI-MSMS UPN48_class_I_Rep_3 7 487.2894592285156 2 487.289485 972.564418 0.15729 7.6646E-05 0.15739 7.6694E-05 0.31468 0.00015334 487.28942271584697 57.357 0.72713 60.888 60.521 61.249 3.5317 111 67 2 0 0 0 0.40174 1 12342 12342 7.9102 0 1 285150 + 13197 20741 8386 8392 16309 16309 0.07703832454001258 IAVSSHLLL 9 Unmodified _IAVSSHLLL_ 0 0 0 L1M4_dup17967|chr17:15531039-15532101:-|2.2116194014035537|0.3024219875373053|2.87|151.0|75|3|anti-sense L1M4_dup17967|chr17:15531039-15532101:-|2.2116194014035537|0.3024219875373053|2.87|151.0|75|3|anti-sense L1M4_dup17967|chr17:15531039-15532101:-|2.2116194014035537|0.3024219875373053|2.87|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_2 3 476.7944030761719 2 476.794935 951.575317 NaN NaN NaN NaN NaN NaN NaN 65.135 1 68.39 67.89 68.89 3.2556 0 0 0 0.081393 1 15564 15564 28.487 0 1 13198 8872 8387 8393 16310 16310 0.09759234828288754 IAVWAKKQ 8 Unmodified _IAVWAKKQ_ 0 0 0 REV__L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|77|2|sense REV__L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|77|2|sense MSMS UPN46_class_I_Rep_3 1 472.287353515625 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 92.892 1 92.892 92.392 93.392 0 0 0 0 0.40738 1 22498 22498 0.79363 0 1 + 13199 29536 8388 8394 16311 16311 0.09150671893701201 IAWQLKEN 8 Unmodified _IAWQLKEN_ 0 0 0 REV__nc|ENSG00000059915|A5PKW4-2|PSD REV__nc|ENSG00000059915|A5PKW4-2|PSD MSMS UPN48_class_I_Rep_3 7 501.290771484375 2 501.274367 1000.53418 NaN NaN NaN NaN NaN NaN NaN 76.959 1 80.56 80.06 81.06 3.6016 0 0 0 0.40501 1 18149 18149 3.9444 0.3479 1 + 13200 17719 8389 8395 16312 16312 0.03393473788810297 IAWVPRWRK 9 Unmodified _IAWVPRWRK_ 0 0 0 REV__AluJr_dup14292|chr3:49401243-49401576:+|1.491334119987576|0.0108842586957876|7.1|151.0|1|1|sense REV__AluJr_dup14292|chr3:49401243-49401576:+|1.491334119987576|0.0108842586957876|7.1|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 607.3659057617188 2 606.361642 1210.70873 0.60693 0.00036802 -0.47913 -0.00029052 0.1278 7.7495E-05 606.3606891550822 109.69 0.56599 109.69 109.56 110.13 0 113 46 3 0 0 0 0.48643 1 26962 26962 2.0598 0.21551 1 4091400 + 13201 17028 8390 8396 16313 16313 0.11180518724631838 IAYIPIQIGN 10 Unmodified _IAYIPIQIGN_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS UPN46_class_I_Rep_3 1 551.3201904296875 2 551.318774 1100.623 0.39363 0.00021702 0.71199 0.00039253 1.1056 0.00060955 551.3188468878365 82.259 0.048676 82.259 82.223 82.272 0 7 4 2 0 0 0 0.56033 1 19479 19479 3.5965 0 1 54058 13202 2987 8391 8397 16314 16314 0.07670889028463534 IAYQRPQN 8 Unmodified _IAYQRPQN_ 0 0 0 L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|14|3|sense L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|14|3|sense L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 495.26165771484375 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.89 1 104.5 104 105 3.6084 0 0 0 0.40625 1 24361 24361 2.3027 0 1 13203 12349 8392 8398 16315 16315 0.014314189862261628 IAYQRPQN 8 Unmodified _IAYQRPQN_ 0 0 0 L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|14|3|sense L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|14|3|sense L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|14|3|sense MSMS UPN48_class_I_Rep_2 6 495.2621765136719 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.92 1 104.67 104.17 105.17 3.7417 0 0 0 0.40625 1 23958 23958 2.3027 0.65011 1 13204 12349 8392 8398 16316 16316 0.014314189862261628 ICCCCCCCCLE 11 Unmodified _ICCCCCCCCLE_ 0 0 0 REV__L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|169|2|anti-sense REV__L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|169|2|anti-sense MSMS UPN47_class_I_Rep_2 3 599.6550903320312 2 599.654657 1197.29476 NaN NaN NaN NaN NaN NaN NaN 117.49 1 120.98 120.48 121.48 3.4891 0 0 0 0.38417 1 28717 28717 0 0 1 + 13205 30262 8393 8399 16317 16317 -0.2959940246203132 ICCKSWALY 9 Unmodified _ICCKSWALY_ 0 0 0 L1ME1_dup22488|chr12:57366323-57366678:-|1.877014168818273|0.009293135139349|7.66|151.0|19|2|anti-sense L1ME1_dup22488|chr12:57366323-57366678:-|1.877014168818273|0.009293135139349|7.66|151.0|19|2|anti-sense L1ME1_dup22488|chr12:57366323-57366678:-|1.877014168818273|0.009293135139349|7.66|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7429809570312 2 543.759181 1085.50381 NaN NaN NaN NaN NaN NaN NaN 27.277 1 30.775 30.275 31.275 3.4986 0 0 0 0.39598 1 4070 4070 1.6526 0 1 13206 12305 8394 8400 16318 16318 -0.03552344192257806 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_1 5 620.6503295898438 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.315 1 40.822 40.322 41.322 3.507 0 0 0 0.38417 1 6333 6333 0 0 1 + 13207 20377 8395 8401 16319 16319 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_1 5 620.6504516601562 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.353 1 40.86 40.36 41.36 3.507 0 0 0 0.38417 1 6344 6344 0.30703 0.30703 1 + 13208 20377 8395 8401 16320 16320 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_1 5 620.65087890625 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.485 1 40.99 40.49 41.49 3.5052 0 0 0 0.38417 1 6380 6380 0 0 1 + 13209 20377 8395 8401 16321 16321 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_1 5 620.6510620117188 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.611 1 41.116 40.616 41.616 3.5052 0 0 0 0.38417 1 6415 6415 0 0 1 + 13210 20377 8395 8401 16322 16322 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_1 5 620.6494140625 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.816 1 41.321 40.821 41.821 3.5052 0 0 0 0.38417 1 6474 6474 0 0 1 + 13211 20377 8395 8401 16323 16323 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 620.6497802734375 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 36.924 1 40.626 40.126 41.126 3.7021 0 0 0 0.38417 1 6259 6259 0 0 1 + 13212 20377 8395 8401 16324 16324 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 620.9866333007812 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.568 1 41.284 40.784 41.784 3.7164 0 0 0 0.38417 1 6442 6442 0 0 1 + 13213 20377 8395 8401 16325 16325 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 620.6505737304688 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.768 1 41.484 40.984 41.984 3.7164 0 0 0 0.38417 1 6501 6501 0 0 1 + 13214 20377 8395 8401 16326 16326 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.3162841796875 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 36.745 1 40.408 39.908 40.908 3.663 0 0 0 0.38417 1 6114 6114 0 0 1 + 13215 20377 8395 8401 16327 16327 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.9859008789062 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.505 1 41.168 40.668 41.668 3.663 0 0 0 0.38417 1 6330 6330 0 0 1 + 13216 20377 8395 8401 16328 16328 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.6513061523438 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.528 1 41.191 40.691 41.691 3.663 0 0 0 0.38417 1 6337 6337 0 0 1 + 13217 20377 8395 8401 16329 16329 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.3173217773438 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 37.533 1 41.196 40.696 41.696 3.663 0 0 0 0.38417 1 6339 6339 0 0 1 + 13218 20377 8395 8401 16330 16330 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.3172607421875 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 38.51 1 42.169 41.669 42.669 3.6595 0 0 0 0.38417 1 6626 6626 0 0 1 + 13219 20377 8395 8401 16331 16331 -0.32337258177813055 ICEECCCCCCE 11 Unmodified _ICEECCCCCCE_ 0 0 0 REV__ENSG00000170775|ENST00000303921|GPR37 REV__ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_3 7 620.8233642578125 2 620.650626 1239.2867 NaN NaN NaN NaN NaN NaN NaN 38.532 1 42.191 41.691 42.691 3.6595 0 0 0 0.38417 1 6633 6633 0 0 1 + 13220 20377 8395 8401 16332 16332 -0.32337258177813055 ICEEKQFY 8 Unmodified _ICEEKQFY_ 0 0 0 L1MC1_dup6797|chr8:67186483-67186959:+|1.4854416167108744|0.0969574665195713|3.94|151.0|31|2|anti-sense L1MC1_dup6797|chr8:67186483-67186959:+|1.4854416167108744|0.0969574665195713|3.94|151.0|31|2|anti-sense L1MC1_dup6797|chr8:67186483-67186959:+|1.4854416167108744|0.0969574665195713|3.94|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 530.24462890625 2 530.244418 1058.47428 NaN NaN NaN NaN NaN NaN NaN 119.65 1 123.22 122.72 123.72 3.566 0 0 0 0.40746 1 28436 28436 0.69038 0 1 13221 11183 8396 8402 16333 16333 -0.05261584936715735 ICEFSSFTFV 10 Unmodified _ICEFSSFTFV_ 0 0 0 REV__L1MB3_dup13885|chr15:89839589-89840243:+|1.2052591855410062|0.1382442050357745|3.12|151.0|27|1|anti-sense REV__L1MB3_dup13885|chr15:89839589-89840243:+|1.2052591855410062|0.1382442050357745|3.12|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 590.2735595703125 2 590.273175 1178.5318 NaN NaN NaN NaN NaN NaN NaN 48.597 1 51.944 51.444 52.444 3.3465 0 0 0 0.53105 1 10521 10521 6.2058 0.47393 1 + 13222 25821 8397 8403 16334 16334 -0.050327427311685824 ICELKMKRC 9 Unmodified _ICELKMKRC_ 0 0 0 REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|92|2|sense REV__L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|92|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.29345703125 2 562.292865 1122.57118 0.29526 0.00016602 -0.46288 -0.00026027 -0.16761 -9.4247E-05 562.2925032012821 54.879 0.72676 58.449 58.11 58.837 3.5694 63 43 2 0 0 0 0.46869 1 11647 11647 3.9444 0.3479 1 105110 + 13223 24154 8398 8404 16335 16335 0.014793627470680804 ICEWTLLLT 9 Unmodified _ICEWTLLLT_ 0 0 0 REV__L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|15|3|sense REV__L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|15|3|sense MSMS UPN48_class_I_Rep_2 6 546.2921752929688 2 546.293911 1090.57327 NaN NaN NaN NaN NaN NaN NaN 47.976 1 51.712 51.212 52.212 3.7361 0 0 0 0.38639 1 9536 9536 3.9444 1.6417 1 + 13224 27757 8399 8405 16336 16336 0.03160438028180579 ICFGIAKR 8 Unmodified _ICFGIAKR_ 0 0 0 REV__L1MC1_dup2634|chr3:136683585-136684467:+|1.1072272041295146|0.0152798023364284|6.18|151.0|61|3|anti-sense REV__L1MC1_dup2634|chr3:136683585-136684467:+|1.1072272041295146|0.0152798023364284|6.18|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_1 5 454.2791442871094 2 454.262748 906.510943 NaN NaN NaN NaN NaN NaN NaN 65.173 1 68.627 68.127 69.127 3.4541 0 0 0 0.40746 1 14808 14808 0.69038 0 1 + 13225 26541 8400 8406 16337 16337 0.05394756470491302 ICFHFLYL 8 Unmodified _ICFHFLYL_ 0 0 0 REV__L1MDa_dup2172|chr5:178507535-178508978:-|1.3830038419623665|0.0270122292401413|5.68|146.0|84|3|anti-sense REV__L1MDa_dup2172|chr5:178507535-178508978:-|1.3830038419623665|0.0270122292401413|5.68|146.0|84|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.7754516601562 2 528.272781 1054.53101 0.24794 0.00013098 2.2853 0.0012073 2.5332 0.0013382 528.7753199620837 81.452 0.075058 84.836 84.792 84.867 3.3839 10 8 2 0 0 0 0.82752 2 20285 20285;20292 17.087 0 1 48231 + 13226 27509 8401 8407 16338;16339 16338 0.005925074104425221 ICFKTFFNF 9 Unmodified _ICFKTFFNF_ 0 0 0 L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|307|2|anti-sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|307|2|anti-sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|307|2|anti-sense MSMS UPN48_class_I_Rep_3 7 583.7893676757812 2 583.788795 1165.56304 NaN NaN NaN NaN NaN NaN NaN 25.167 1 28.936 28.436 29.436 3.769 0 0 0 0.39518 1 3022 3022 1.8442 0 1 13227 9285 8402 8408 16340 16340 -0.013121249064170115 ICGVYGYNLMA 11 Unmodified _ICGVYGYNLMA_ 0 0 0 REV__nc|ENSG00000021645|Q9Y4C0-3|NRXN3 REV__nc|ENSG00000021645|Q9Y4C0-3|NRXN3 MSMS UPN47_class_I_Rep_1 2 602.2793579101562 2 602.280477 1202.5464 NaN NaN NaN NaN NaN NaN NaN 32.898 1 36.611 36.111 37.111 3.7131 0 0 0 0.38417 1 5722 5722 1.4819 0 1 + 13228 17607 8403 8409 16341 16341 -0.046769938546958656 ICHLHIFF 8 Unmodified _ICHLHIFF_ 0 0 0 L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|66|1|anti-sense L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|66|1|anti-sense L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|66|1|anti-sense MSMS UPN47_class_I_Rep_2 3 515.2301635742188 2 515.270573 1028.52659 NaN NaN NaN NaN NaN NaN NaN 64.21 1 67.466 66.966 67.966 3.2556 0 0 0 0.4032 1 15281 15281 6.3541 0 1 13229 11108 8404 8410 16342 16342 0.013470429875496848 ICHMHLLKL 9 Unmodified _ICHMHLLKL_ 0 0 0 L1MC5a_dup1992|chr2:127381576-127382348:+|2.508158673405537|0.0265948209740104|6.56|151.0|29|1|anti-sense L1MC5a_dup1992|chr2:127381576-127382348:+|2.508158673405537|0.0265948209740104|6.56|151.0|29|1|anti-sense L1MC5a_dup1992|chr2:127381576-127382348:+|2.508158673405537|0.0265948209740104|6.56|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 554.314208984375 2 554.311915 1106.60928 NaN NaN NaN NaN NaN NaN NaN 60.013 1 63.5 63 64 3.4868 0 0 0 0.39428 1 13216 13216 2.0598 0.21551 1 13230 11731 8405 8411 16343 16343 0.06023616724019121 ICIALVRIFF 10 Unmodified _ICIALVRIFF_ 0 0 0 REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|93|1|anti-sense REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|93|1|anti-sense MSMS UPN48_class_I_Rep_1 5 597.8564453125 2 597.857012 1193.69947 NaN NaN NaN NaN NaN NaN NaN 85.041 1 88.647 88.147 89.147 3.6059 0 0 0 0.53105 1 20344 20344 1.8442 0 1 + 13231 30498 8406 8412 16344 16344 0.11036989324088609 ICIEELVIYF 10 Unmodified _ICIEELVIYF_ 0 0 0 L1M3f_dup43|chr1:174904937-174905570:+|1.078653939658795|0.0120727289085168|6.48|151.0|35|1|anti-sense L1M3f_dup43|chr1:174904937-174905570:+|1.078653939658795|0.0120727289085168|6.48|151.0|35|1|anti-sense L1M3f_dup43|chr1:174904937-174905570:+|1.078653939658795|0.0120727289085168|6.48|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_3 7 621.3280639648438 2 621.32795 1240.64135 NaN NaN NaN NaN NaN NaN NaN 83.649 1 87.377 86.877 87.877 3.7281 0 0 0 0.53105 1 19837 19837 4.3292 0 1 13232 8801 8407 8413 16345 16345 0.030652628881625787 ICIHCIHHF 9 Unmodified _ICIHCIHHF_ 0 0 0 REV__L1MCa_dup1162|chr3:17457090-17457990:-|1.1027674500542837|0.0077054370634348|7.16|151.0|38|1|anti-sense REV__L1MCa_dup1162|chr3:17457090-17457990:-|1.1027674500542837|0.0077054370634348|7.16|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_1 5 561.7706298828125 2 561.770414 1121.52628 NaN NaN NaN NaN NaN NaN NaN 46.428 1 49.947 49.447 50.447 3.5192 0 0 0 0.381 1 9063 9063 5.2307 0 1 + 13233 27180 8408 8414 16346 16346 -0.029627000039909035 ICIYGHMFY 9 Unmodified _ICIYGHMFY_ 0 0 0 REV__L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|34|2|sense REV__L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|34|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.7581787109375 2 573.759181 1145.50381 0.52447 0.00030092 -0.64956 -0.00037269 -0.12509 -7.177E-05 573.7587526306909 52.087 0.26274 55.293 55.072 55.335 3.2055 16 13 2 0 0 0 0.2896 1 11626 11626 14.582 2.9414 1 49169 + 13234 28049 8409 8415 16347 16347 -0.06312344192224373 ICIYKGIYSSM 11 Unmodified _ICIYKGIYSSM_ 0 0 0 REV__L1ME4b_dup20298|chr19:48246608-48247041:+|1.1079403184936376|0.0913393992552089|3.6|151.0|20|1|anti-sense REV__L1ME4b_dup20298|chr19:48246608-48247041:+|1.1079403184936376|0.0913393992552089|3.6|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_1 5 639.315673828125 2 639.31706 1276.61957 NaN NaN NaN NaN NaN NaN NaN 54.581 1 58.095 57.595 58.595 3.5143 0 0 0 0.38417 1 11570 11570 1.3295 0.72803 1 + 13235 28276 8410 8416 16348 16348 -0.007678651320702556 ICKIKLGPV 9 Unmodified _ICKIKLGPV_ 0 0 0 nc|ENSG00000091181|Q01344-4|IL5RA nc|ENSG00000091181|Q01344-4|IL5RA nc|ENSG00000091181|Q01344-4|IL5RA MSMS UPN47_class_I_Rep_2 3 485.8115539550781 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 72.769 1 76.066 75.566 76.566 3.2971 0 0 0 0.39326 1 17856 17856 2.3027 0.4585 1 13236 16643 8411 8417 16349 16349 0.11849055852906076 ICKKPCTKY 9 Unmodified _ICKKPCTKY_ 0 0 0 REV__L1PA16_dup555|chr1:174410276-174413996:-|1.5759349825259452|0.0222297521376238|6.15|149.0|93|3|sense REV__L1PA16_dup555|chr1:174410276-174413996:-|1.5759349825259452|0.0222297521376238|6.15|149.0|93|3|sense MSMS UPN46_class_I_Rep_3 1 542.2876586914062 2 542.288105 1082.56166 NaN NaN NaN NaN NaN NaN NaN 20.696 1 20.696 20.196 21.196 0 0 0 0 0.3377 1 2195 2195 8.7454 0.58988 1 + 13237 29389 8412 8418 16350 16350 0.02367917733181457 ICKLYPPH 8 Unmodified _ICKLYPPH_ 0 0 0 REV__MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|6|1|sense REV__MER44C_dup10|chr1:37541720-37542409:-|1.0287564948360783|0.291659628254996|1.82|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 485.7723388671875 2 485.762581 969.510608 NaN NaN NaN NaN NaN NaN NaN 111.98 1 115.61 115.11 116.11 3.6321 0 0 0 0.40738 1 27169 27169 0.79363 0 1 + 13238 31323 8413 8419 16351 16351 0.02463336750633971 ICLFAKIYL 9 Unmodified _ICLFAKIYL_ 0 0 0 Tigger17a_dup938|chr7:37205206-37205873:-|2.0031329817439776|0.0229868269998425|6.45|151.0|14|3|sense Tigger17a_dup938|chr7:37205206-37205873:-|2.0031329817439776|0.0229868269998425|6.45|151.0|14|3|sense Tigger17a_dup938|chr7:37205206-37205873:-|2.0031329817439776|0.0229868269998425|6.45|151.0|14|3|sense MSMS UPN47_class_I_Rep_2 3 542.31689453125 2 542.317189 1082.61982 NaN NaN NaN NaN NaN NaN NaN 35.068 1 38.493 37.993 38.993 3.4253 0 0 0 0.39428 1 6419 6419 2.0598 0 1 13239 33262 8414 8420 16352 16352 0.08181922650101114 ICLPEKDFY 9 Unmodified _ICLPEKDFY_ 0 0 0 L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|247|2|anti-sense L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|247|2|anti-sense L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|247|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2744140625 2 564.275718 1126.53688 NaN NaN NaN NaN NaN NaN NaN 120 1 123.47 122.97 123.97 3.4733 0 0 0 0.39518 1 29416 29416 1.8442 0.19162 1 13240 15174 8415 8421 16353 16353 -0.02132438868557074 ICLSVPGRFY 10 Unmodified _ICLSVPGRFY_ 0 0 0 L1MA9_dup954|chr1:235689289-235689821:+|2.6650256244131074|0.0493836783257309|5.75|151.0|25|1|anti-sense L1MA9_dup954|chr1:235689289-235689821:+|2.6650256244131074|0.0493836783257309|5.75|151.0|25|1|anti-sense L1MA9_dup954|chr1:235689289-235689821:+|2.6650256244131074|0.0493836783257309|5.75|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_1 2 577.789794921875 2 577.804977 1153.5954 NaN NaN NaN NaN NaN NaN NaN 71.161 1 74.536 74.036 75.036 3.3751 0 0 0 0.53105 1 17333 17333 10.824 1.4408 1 13241 10162 8416 8422 16354 16354 0.024746624965928277 ICLWHVMVF 9 Unmodified _ICLWHVMVF_ 0 0 0 Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|134|3|anti-sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|134|3|anti-sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|134|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.3297119140625 2 574.293191 1146.57183 0.51647 0.00029661 2.466 0.0014162 2.9825 0.0017128 574.796184222524 76.851 0.050758 80.452 80.426 80.477 3.6016 6 4 2 0 0 0 0.12422 1 18113 18113 2.3027 0 1 105120 13242 33199 8417 8423 16355 16355 0.004405254584298746 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2947998046875 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 46.959 1 46.959 46.459 47.459 0 0 0 0 0.39326 1 9669 9669 2.3027 0.24298 1 + 13243 24477 8418 8424 16356 16356 -0.04288301552651319 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2588500976562 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 117.32 1 117.32 116.82 117.82 0 0 0 0 0.39326 1 29078 29078 2.3027 0.4585 1 + 13244 24477 8418 8424 16357 16357 -0.04288301552651319 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.258544921875 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 117.44 1 117.44 116.94 117.94 0 0 0 0 0.39326 1 29109 29109 2.3027 0 1 + 13245 24477 8418 8424 16358 16358 -0.04288301552651319 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.258544921875 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 118.04 1 118.04 117.54 118.54 0 0 0 0 0.39326 1 29283 29283 2.3027 0.24298 1 + 13246 24477 8418 8424 16359 16359 -0.04288301552651319 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2587280273438 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 118.73 1 118.73 118.23 119.23 0 0 0 0 0.39326 1 29482 29482 2.3027 0.24298 1 + 13247 24477 8418 8424 16360 16360 -0.04288301552651319 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2586059570312 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 118.85 1 118.85 118.35 119.35 0 0 0 0 0.39326 1 29517 29517 2.3027 0.4585 1 + 13248 24477 8418 8424 16361 16361 -0.04288301552651319 ICMCVFVER 9 Unmodified _ICMCVFVER_ 0 0 0 REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense REV__L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.259033203125 2 550.258491 1098.50243 NaN NaN NaN NaN NaN NaN NaN 119.38 1 119.38 118.88 119.88 0 0 0 0 0.39326 1 29671 29671 2.3027 0.24298 1 + 13249 24477 8418 8424 16362 16362 -0.04288301552651319 ICMVFKAPF 9 Unmodified _ICMVFKAPF_ 0 0 0 L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|237|2|anti-sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|237|2|anti-sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|237|2|anti-sense MSMS UPN48_class_I_Rep_1 5 528.2750854492188 2 528.274467 1054.53438 NaN NaN NaN NaN NaN NaN NaN 61.834 1 65.301 64.801 65.801 3.4678 0 0 0 0.38299 1 13790 13790 4.756 1.1595 1 13250 15128 8419 8425 16363 16363 0.009294341928125505 ICMYKPYN 8 Unmodified _ICMYKPYN_ 0 0 0 REV__L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|139|3|sense REV__L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|139|3|sense MSMS UPN47_class_I_Rep_3 4 516.2379760742188 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 36.428 1 39.683 39.183 40.183 3.2547 0 0 0 0.40604 1 6867 6867 2.5775 0 1 + 13251 29628 8420 8426 16364 16364 -0.05240319600625298 ICVRMKLV 8 Unmodified _ICVRMKLV_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|135|3|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|135|3|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|135|3|sense MSMS UPN47_class_I_Rep_2 3 481.3360900878906 2 481.287908 960.561264 NaN NaN NaN NaN NaN NaN NaN 113.96 1 117.47 116.97 117.97 3.5109 0 0 0 0.40746 1 27732 27732 0.69038 0 1 13252 9554 8421 8427 16365 16365 0.07940542803999051 ICVTLRPV 8 Unmodified _ICVTLRPV_ 0 0 0 REV__MSTA-int_dup1399|chr8:59078679-59079975:+|1.5692578174571907|0.0121562538595069|7.01|151.0|46|1|anti-sense REV__MSTA-int_dup1399|chr8:59078679-59079975:+|1.5692578174571907|0.0121562538595069|7.01|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_3 7 450.77081298828125 2 450.770406 899.526258 NaN NaN NaN NaN NaN NaN NaN 47.756 1 51.39 50.89 51.89 3.6339 0 0 0 0.40472 1 9404 9404 4.3292 0 1 + 13253 31864 8422 8428 16366 16366 0.07247623267687686 ICWCPHRKY 9 Unmodified _ICWCPHRKY_ 0 0 0 L1M1_dup1733|chr3:121957657-121958355:+|2.371099669288594|0.0167178907243903|7.15|151.0|4|1|sense L1M1_dup1733|chr3:121957657-121958355:+|2.371099669288594|0.0167178907243903|7.15|151.0|4|1|sense L1M1_dup1733|chr3:121957657-121958355:+|2.371099669288594|0.0167178907243903|7.15|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 603.291015625 2 603.288971 1204.56339 NaN NaN NaN NaN NaN NaN NaN 29.964 1 33.506 33.006 34.006 3.542 0 0 0 0.40038 1 4237 4237 0.6015 0.076735 1 13254 8495 8423 8429 16367 16367 -0.030710284582255554 ICYIFHLN 8 Unmodified _ICYIFHLN_ 0 0 0 REV__L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|146|1|anti-sense REV__L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|146|1|anti-sense MSMS UPN47_class_I_Rep_3 4 511.760009765625 2 511.760038 1021.50552 NaN NaN NaN NaN NaN NaN NaN 38.618 1 41.859 41.359 42.359 3.2414 0 0 0 0.40604 1 7539 7539 2.5775 0 1 + 13255 24151 8424 8430 16368 16368 -0.004369671120002749 IDALRHKNCC 10 Unmodified _IDALRHKNCC_ 0 0 0 REV__L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|117|3|anti-sense REV__L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.7869873046875 2 586.786792 1171.55903 NaN NaN NaN NaN NaN NaN NaN 54.767 1 58.086 57.586 58.586 3.3187 0 0 0 0.53105 1 12408 12408 2.9952 0 1 + 13256 25140 8425 8431 16369 16369 -0.019885376717638792 IDCQTFFKR 9 Unmodified _IDCQTFFKR_ 0 0 0 REV__ENSG00000166266.14,CUL5,chr11,+,I4.1,108050067,108052659|27|4.87|2|intron REV__ENSG00000166266.14,CUL5,chr11,+,I4.1,108050067,108052659|27|4.87|2|intron MSMS UPN47_class_I_Rep_1 2 579.7750854492188 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 64.429 1 67.785 67.285 68.285 3.3557 0 0 0 0.38639 1 15308 15308 3.9444 0.3479 1 + 13257 20163 8426 8432 16370 16370 -0.002108120258526469 IDCWFCLYF 9 Unmodified _IDCWFCLYF_ 0 0 0 REV__L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|96|1|anti-sense REV__L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|96|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 605.260986328125 2 605.259013 1208.50347 0.5162 0.00031243 0.33371 0.00020198 0.84991 0.00051442 605.7605983932864 52.809 0.74911 56.136 55.902 56.652 3.3266 76 48 2 0 0 0 0.48414 1 11753 11753 2.3027 0 1 311120 + 13258 25639 8427 8433 16371 16371 -0.09243763912104441 IDEGKLVHF 9 Unmodified _IDEGKLVHF_ 0 0 0 nc|ENSG00000170703|Q8N841-4|TTLL6 nc|ENSG00000170703|Q8N841-4|TTLL6 nc|ENSG00000170703|Q8N841-4|TTLL6 MSMS UPN48_class_I_Rep_1 5 529.7503051757812 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 30.752 1 34.294 33.794 34.794 3.542 0 0 0 0.39326 1 4458 4458 2.3027 0 1 13259 16748 8428 8434 16372 16372 0.034377429602727716 IDELPGPPEL 10 Unmodified _IDELPGPPEL_ 0 0 0 REV__ENST00000487794.5_3_9:139835214-139835373:-|nuORF REV__ENST00000487794.5_3_9:139835214-139835373:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 540.2843627929688 2 540.284597 1078.55464 0.47004 0.00025396 -0.019174 -1.036E-05 0.45087 0.0002436 540.284560445081 79.65 0.52892 83.283 82.907 83.436 3.6331 122 59 3 0 0 0 0.31342 1 18906 18906 29.082 1.4528 1 292300 + 13260 22610 8429 8435 16373 16373 0.01850599657973362 IDELQKQRA 9 Unmodified _IDELQKQRA_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS UPN47_class_I_Rep_2 3 550.8068237304688 2 550.806562 1099.59857 0.033181 1.8276E-05 0.082735 4.5571E-05 0.11592 6.3847E-05 550.8066844458415 31.958 0.5457 35.428 35.248 35.793 3.4691 62 40 2 0 0 0 0.36392 1 5499 5499 10.074 10.074 1 98791 + 13261 18881 8430 8436 16374 16374 0.052756288749378655 IDFFIMAGRY 10 Unmodified _IDFFIMAGRY_ 0 0 0 LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|49|3|anti-sense LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|49|3|anti-sense LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 616.8098754882812 2 616.810259 1231.60597 NaN NaN NaN NaN NaN NaN NaN 56.788 1 60.246 59.746 60.746 3.4572 0 0 0 0.53105 1 12996 12996 6.7232 0.99131 1 13262 15514 8431 8437 16375 16375 -0.0005735484896831622 IDFRCAGESC 10 Unmodified _IDFRCAGESC_ 0 0 0 ENSG00000181649|ENST00000314222|PHLDA2 ENSG00000181649|ENST00000314222|PHLDA2 ENSG00000181649|ENST00000314222|PHLDA2 MSMS UPN47_class_I_Rep_2 3 550.748291015625 2 550.728609 1099.44266 NaN NaN NaN NaN NaN NaN NaN 27.411 1 30.91 30.41 31.41 3.4986 0 0 0 0.53105 1 4110 4110 1.3295 0.5359 1 13263 4923 8432 8438 16376 16376 -0.10307900962334315 IDGPQILGGIE 11 Unmodified _IDGPQILGGIE_ 0 0 0 REV__ENST00000491331.5_1_2:192543720-192546744:+|nuORF REV__ENST00000491331.5_1_2:192543720-192546744:+|nuORF MSMS UPN48_class_I_Rep_1 5 556.3065795898438 2 556.303321 1110.59209 NaN NaN NaN NaN NaN NaN NaN 75.106 1 78.596 78.096 79.096 3.49 0 0 0 0.38417 1 17778 17778 2.4985 0.19575 1 + 13264 20489 8433 8439 16377 16377 0.0412169092357999 IDHILGYK 8 Unmodified _IDHILGYK_ 0 0 0 L1MC1_dup9591|chr12:12771708-12772936:+|2.752496827915241|0.0209042233506211|7.04|151.0|43|3|sense L1MC1_dup9591|chr12:12771708-12772936:+|2.752496827915241|0.0209042233506211|7.04|151.0|43|3|sense L1MC1_dup9591|chr12:12771708-12772936:+|2.752496827915241|0.0209042233506211|7.04|151.0|43|3|sense MSMS UPN47_class_I_Rep_1 2 479.78759765625 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 45.313 1 49.013 48.513 49.513 3.6999 0 0 0 0.4044 1 9505 9505 4.756 0.42677 1 13265 11218 8434 8440 16378 16378 0.04790375277138992 IDHIPPPGL 9 Unmodified _IDHIPPPGL_ 0 0 0 REV__MSTD-int_dup118|chr3:57783054-57784716:+|1.760874706431112|0.0210159334062135|6.39|151.0|90|3|anti-sense REV__MSTD-int_dup118|chr3:57783054-57784716:+|1.760874706431112|0.0210159334062135|6.39|151.0|90|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.7706298828125 2 479.77146 957.528367 -0.29431 -0.0001412 -0.75987 -0.00036456 -1.0542 -0.00050576 479.770923062729 37.414 0.47976 41.08 40.847 41.327 3.6652 47 34 2 0 0 0 0.48643 1 7063 7063 2.0598 0 1 57619 + 13266 31923 8435 8441 16379 16379 0.04790375277127623 IDHQPFDSF 9 Unmodified _IDHQPFDSF_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MSMS UPN47_class_I_Rep_2 3 553.2511596679688 2 553.251089 1104.48762 NaN NaN NaN NaN NaN NaN NaN 58.26 1 61.542 61.042 62.042 3.2818 0 0 0 0.35339 1 13474 13474 7.9102 0 1 + 13267 17664 8436 8442 16380 16380 -0.06044010833147695 IDHRKQYH 8 Unmodified _IDHRKQYH_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-2|ZNF462 REV__nc|ENSG00000148143|Q96JM2-2|ZNF462 MSMS UPN48_class_I_Rep_1 5 548.7862548828125 2 548.785964 1095.55738 NaN NaN NaN NaN NaN NaN NaN 35.386 1 38.896 38.396 39.396 3.5101 0 0 0 0.40625 1 5781 5781 2.3027 0 1 + 13268 19578 8437 8443 16381 16381 0.013419126261396741 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 566.783447265625 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.013 1 20.536 20.036 21.036 3.5224 0 0 0 0.40746 1 1197 1197 0.69038 0.088878 1 + 13269 28526 8438 8444 16382 16382 -0.0031408737386300345 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 566.7841796875 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.034 1 20.557 20.057 21.057 3.5224 0 0 0 0.40746 1 1202 1202 0.69038 0.088878 1 + 13270 28526 8438 8444 16383 16383 -0.0031408737386300345 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 566.7841186523438 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.129 1 20.651 20.151 21.151 3.5224 0 0 0 0.40746 1 1227 1227 0.69038 0.088878 1 + 13271 28526 8438 8444 16384 16384 -0.0031408737386300345 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 566.783935546875 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.319 1 20.845 20.345 21.345 3.5261 0 0 0 0.40625 1 989 989 2.3027 0.82083 1 + 13272 28526 8438 8444 16385 16385 -0.0031408737386300345 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 566.7841796875 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 16.879 1 20.532 20.032 21.032 3.6527 0 0 0 0.40746 1 901 901 0.69038 0.088878 1 + 13273 28526 8438 8444 16386 16386 -0.0031408737386300345 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 566.7841186523438 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.033 1 20.685 20.185 21.185 3.6518 0 0 0 0.40746 1 933 933 0.69038 0.088878 1 + 13274 28526 8438 8444 16387 16387 -0.0031408737386300345 IDHWYRRS 8 Unmodified _IDHWYRRS_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 566.7838745117188 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.16 1 20.812 20.312 21.312 3.6518 0 0 0 0.40746 1 959 959 0.69038 0.088878 1 + 13275 28526 8438 8444 16388 16388 -0.0031408737386300345 IDIFGSAIFI 10 Unmodified _IDIFGSAIFI_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.3076171875 2 548.307875 1094.6012 0.54139 0.00029685 -0.40239 -0.00022063 0.139 7.6217E-05 548.3076431029358 95.92 0.73717 99.685 99.392 100.13 3.7648 156 104 2 0 0 0 0.23621 3 23819 23792;23819;23843 39.957 0 1 171160 13276 8632 8439 8445 16389;16390;16391 16390 0.05768084279884533 IDIFGSAIFI 10 Unmodified _IDIFGSAIFI_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 548.8095092773438 2 548.307875 1094.6012 0.61382 0.00033656 -0.4612 -0.00025288 0.15262 8.3683E-05 548.3075976360682 96.236 0.48809 99.715 99.282 99.77 3.4791 109 71 2 0 0 0 0.30285 1 23647 23647 32.305 0 1 374200 13277 8632 8439 8445 16392 16392 0.05768084279884533 IDIFGSAIFI 10 Unmodified _IDIFGSAIFI_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense MSMS UPN47_class_I_Rep_3 4 548.3081665039062 2 548.307875 1094.6012 NaN NaN NaN NaN NaN NaN NaN 96.256 1 99.67 99.17 100.17 3.414 0 0 0 0.53105 1 23887 23887 48.346 0 1 13278 8632 8439 8445 16393 16393 0.05768084279884533 IDIFGSAIFI 10 Unmodified _IDIFGSAIFI_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense MSMS UPN47_class_I_Rep_3 4 548.3076171875 2 548.307875 1094.6012 NaN NaN NaN NaN NaN NaN NaN 96.376 1 99.791 99.291 100.29 3.414 0 0 0 0.53105 1 23909 23909 32.305 0 1 13279 8632 8439 8445 16394 16394 0.05768084279884533 IDIFGSAIFI 10 Unmodified _IDIFGSAIFI_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 548.307875 1094.6012 0.54139 0.00029685 -0.40239 -0.00022063 0.139 7.6217E-05 548.3076431029358 95.92 0.73717 99.685 99.392 100.13 3.7648 -0.1072 -3.8227E-05 NaN 39.957 156 104 2 NaN NaN NaN NaN 0 NaN NaN 0 171160 13280 8632 8439 8445 0.05768084279884533 IDIFGSAIFI 10 Unmodified _IDIFGSAIFI_ 0 0 0 L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|221|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 548.307875 1094.6012 0.49544 0.00027166 0.074218 4.0695E-05 0.56966 0.00031235 548.3078474869038 96.562 0.16508 99.976 99.878 100.04 3.414 0.18389 0.00048443 NaN 39.957 36 23 2 NaN NaN NaN NaN 0 NaN NaN 0 197270 13281 8632 8439 8445 0.05768084279884533 IDIPFPHDK 9 Unmodified _IDIPFPHDK_ 0 0 0 REV__ENSG00000151461|ENST00000357604|UPF2 REV__ENSG00000151461|ENST00000357604|UPF2 MSMS UPN48_class_I_Rep_3 7 541.2863159179688 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 41.104 1 44.75 44.25 45.25 3.6458 0 0 0 0.25702 1 7388 7388 13.042 0 1 + 13282 19655 8440 8446 16395 16395 0.023337429602634074 IDIPSHRLV 9 Unmodified _IDIPSHRLV_ 0 0 0 PIWIL1|p.L457Ffs*14|1|0.06|ENSG00000125207|chr12:130355629-130355630|-/T|frameshift_variant;nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1 PIWIL1|p.L457Ffs*14|1|0.06|ENSG00000125207|chr12:130355629-130355630|-/T|frameshift_variant PIWIL1|p.L457Ffs*14|1|0.06|ENSG00000125207|chr12:130355629-130355630|-/T|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_1 2 525.7824096679688 2 525.308741 1048.60293 -0.051609 -2.7111E-05 -0.46639 -0.000245 -0.518 -0.00027211 525.3085181833579 42.079 0.59874 45.758 45.429 46.028 3.6792 53 40 2 0 0 0 0.118 1 8599 8599 10.074 0 1 54541 13283 2496 8441 8447 16396 16396 0.08057138088497595 IDISILQRS 9 Unmodified _IDISILQRS_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MULTI-MSMS UPN48_class_I_Rep_2 6 522.8060302734375 2 522.806031 1043.59751 0.31224 0.00016324 -0.30807 -0.00016106 0.0041684 2.1793E-06 522.8058083121898 49.159 0.49917 52.876 52.598 53.097 3.7175 55 33 2 0 0 0 0.17979 1 9894 9894 22.658 0 1 178020 13284 3713 8442 8448 16397 16397 0.07745414506052839 IDISVAVVL 9 Unmodified _IDISVAVVL_ 0 0 0 REV__L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|136|3|anti-sense REV__L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|136|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 464.78912353515625 2 464.789318 927.564084 0.091262 4.2418E-05 0.11713 5.4441E-05 0.20839 9.6859E-05 464.7893155054247 63.162 0.4957 66.521 66.241 66.736 3.3595 55 37 2 0 0 0 0.10817 1 14929 14929 32.305 0 1 87518 + 13285 27208 8443 8449 16398 16398 0.09740412734140591 IDISVAVVL 9 Unmodified _IDISVAVVL_ 0 0 0 REV__L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|136|3|anti-sense REV__L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|136|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 464.789318 927.564084 0.091262 4.2418E-05 0.11713 5.4441E-05 0.20839 9.6859E-05 464.7893155054247 63.162 0.4957 66.521 66.241 66.736 3.3595 -0.018195 9.3427E-05 NaN 32.305 55 37 2 NaN NaN NaN NaN 0 NaN NaN 0 87518 + 13286 27208 8443 8449 0.09740412734140591 IDIWQFKFFIW 11 Unmodified _IDIWQFKFFIW_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|25|2|anti-sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_2 3 514.73828125 3 514.942979 1541.80711 NaN NaN NaN NaN NaN NaN NaN 64.958 1 68.214 67.714 68.714 3.2556 0 0 0 0.38417 1 15509 15509 0.45452 0 1 + 13287 26823 8444 8450 16399 16399 0.05787657459154616 IDIYHLTRE 9 Unmodified _IDIYHLTRE_ 0 0 0 ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88366676-88366832:+|nuORF ENSG00000033050|ENST00000287844|ABCF2 ENSG00000033050|ENST00000287844|ABCF2 MSMS UPN46_class_I_Rep_3 1 580.3084716796875 2 580.308938 1158.60332 NaN NaN NaN NaN NaN NaN NaN 25.464 1 25.464 24.964 25.964 0 0 0 0 0.39598 1 3497 3497 1.6526 0.32309 1 13288 839 8445 8451 16400 16400 0.030365130177187893 IDKLFPPL 8 Unmodified _IDKLFPPL_ 0 0 0 REV__L1MEf_dup422|chr1:155449819-155450525:-|4.061523346423115|0.0531289483699578|6.26|151.0|27|1|anti-sense REV__L1MEf_dup422|chr1:155449819-155450525:-|4.061523346423115|0.0531289483699578|6.26|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79547119140625 2 471.786579 941.558604 NaN NaN NaN NaN NaN NaN NaN 58.297 1 61.734 61.234 62.234 3.437 0 0 0 0.4044 1 13451 13451 4.756 0 1 + 13289 28631 8446 8452 16401 16401 0.0854873394232527 IDKNQQLIR 9 Unmodified _IDKNQQLIR_ 0 0 0 REV__L1MC4a_dup8321|chr15:63738033-63738557:+|1.283105762249769|0.0221673167291162|5.86|151.0|5|1|sense REV__L1MC4a_dup8321|chr15:63738033-63738557:+|1.283105762249769|0.0221673167291162|5.86|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 564.2642211914062 2 564.330205 1126.64586 NaN NaN NaN NaN NaN NaN NaN 48.659 1 52.006 51.506 52.506 3.3465 0 0 0 0.38916 1 10538 10538 3.2813 0 1 + 13290 27025 8447 8453 16402 16402 0.0875990814593024 IDKSKYITS 9 Unmodified _IDKSKYITS_ 0 0 0 REV__L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|30|3|sense REV__L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|30|3|sense MSMS UPN47_class_I_Rep_1 2 527.7931518554688 2 527.792589 1053.57063 NaN NaN NaN NaN NaN NaN NaN 31.71 1 35.439 34.939 35.939 3.7293 0 0 0 0.38916 1 5359 5359 3.2813 0 1 + 13291 25276 8448 8454 16403 16403 0.04598305894865007 IDLFENQLL 9 Unmodified _IDLFENQLL_ 0 0 0 L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|262|2|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|262|2|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|262|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.799560546875 2 552.800414 1103.58628 0.44649 0.00024682 -0.20888 -0.00011547 0.23761 0.00013135 552.8003597831079 61.822 0.23608 65.081 64.99 65.226 3.2594 25 16 2 0 0 0 0.41259 1 14579 14579 7.2892 0.56607 1 62260 13292 14164 8449 8455 16404 16404 0.03862592411906007 IDLGKICRY 9 Unmodified _IDLGKICRY_ 0 0 0 REV__L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|34|2|sense REV__L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 540.7971801757812 2 540.797152 1079.57975 NaN NaN NaN NaN NaN NaN NaN 41.005 1 44.651 44.151 45.151 3.6458 0 0 0 0.28335 1 7357 7357 11.64 2.2929 1 + 13293 26892 8450 8456 16405 16405 0.04314375979538454 IDLIEALNK 9 Unmodified _IDLIEALNK_ 0 0 0 L1MC5a_dup8937|chr9:85667345-85668220:+|1.165410459078721|0.0434346386043256|4.75|150.0|23|2|sense L1MC5a_dup8937|chr9:85667345-85668220:+|1.165410459078721|0.0434346386043256|4.75|150.0|23|2|sense L1MC5a_dup8937|chr9:85667345-85668220:+|1.165410459078721|0.0434346386043256|4.75|150.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.7922973632812 2 514.802957 1027.59136 0.035305 1.8175E-05 0.47812 0.00024614 0.51342 0.00026431 514.8029831851906 67.32 0.31329 70.583 70.345 70.658 3.2636 26 24 2 0 0 0 0.24936 1 16208 16208 17.113 1.8644 1 73594 13294 11772 8451 8457 16406 16406 0.0786689627452688 IDLITYYTF 9 Unmodified _IDLITYYTF_ 0 0 0 REV__ENSG00000113194|ENST00000261942|FAF2 REV__ENSG00000113194|ENST00000261942|FAF2 MSMS UPN47_class_I_Rep_1 2 574.794189453125 2 574.79734 1147.58013 NaN NaN NaN NaN NaN NaN NaN 74.392 1 77.785 77.285 78.285 3.3937 0 0 0 0.31276 1 18308 18308 10.074 0 1 + 13295 18495 8452 8458 16407 16407 0.012240741803452693 IDLITYYTF 9 Unmodified _IDLITYYTF_ 0 0 0 REV__ENSG00000113194|ENST00000261942|FAF2 REV__ENSG00000113194|ENST00000261942|FAF2 MSMS UPN47_class_I_Rep_3 4 574.7949829101562 2 574.79734 1147.58013 NaN NaN NaN NaN NaN NaN NaN 74.386 1 77.623 77.123 78.123 3.2363 0 0 0 0.31276 1 18409 18409 10.074 0 1 + 13296 18495 8452 8458 16408 16408 0.012240741803452693 IDLLPYLYRRR 11 Unmodified _IDLLPYLYRRR_ 0 0 0 REV__MER21-int_dup853|chr18:36148886-36150226:-|1.7286945313785718|0.0420399805988981|5.36|151.0|75|2|anti-sense REV__MER21-int_dup853|chr18:36148886-36150226:-|1.7286945313785718|0.0420399805988981|5.36|151.0|75|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 493.8103942871094 3 493.292782 1476.85652 0.23026 0.00011358 -1.7232 -0.00085003 -1.4929 -0.00073645 493.291075152525 53.705 0.036518 53.705 53.679 53.715 0 5 3 2 0 0 0 22.551 1 11569 11569 1.2148 0 1 35521 + 13297 31176 8453 8459 16409 16409 0.13716365467939795 IDLPYGNKY 9 Unmodified _IDLPYGNKY_ 0 0 0 L1ME3G_dup6910|chr7:38365124-38365862:+|1.2016156260747857|0.0323306508562588|5.22|151.0|16|2|sense L1ME3G_dup6910|chr7:38365124-38365862:+|1.2016156260747857|0.0323306508562588|5.22|151.0|16|2|sense L1ME3G_dup6910|chr7:38365124-38365862:+|1.2016156260747857|0.0323306508562588|5.22|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 541.7882690429688 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 41.484 1 44.99 44.49 45.49 3.506 0 0 0 0.36505 1 7567 7567 7.2892 0 1 13298 12846 8454 8460 16410 16410 0.0069003672338112665 IDLTPPCPRA 10 Unmodified _IDLTPPCPRA_ 0 0 0 REV__MSTA_dup7038|chr6:15288108-15288509:-|1.9601453905174329|0.0071189813386771|8.11|151.0|18|1|anti-sense REV__MSTA_dup7038|chr6:15288108-15288509:-|1.9601453905174329|0.0071189813386771|8.11|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 541.7872314453125 2 541.786784 1081.55902 NaN NaN NaN NaN NaN NaN NaN 41.019 1 44.77 44.27 45.27 3.7508 0 0 0 0.53105 1 7449 7449 9.3831 2.0939 1 + 13299 31850 8455 8461 16411 16411 0.021497855998632076 IDMMLWRHA 9 Unmodified _IDMMLWRHA_ 0 0 0 nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 MSMS UPN47_class_I_Rep_1 2 586.78662109375 2 586.788804 1171.56305 NaN NaN NaN NaN NaN NaN NaN 54.652 1 58.153 57.653 58.653 3.5014 0 0 0 0.38478 1 12344 12344 4.3292 0.38484 1 13300 1808 8456 8462 16412 16412 -0.015864481780454298 IDMSILTIDT 10 Unmodified _IDMSILTIDT_ 0 0 0 REV__L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|138|3|sense REV__L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|138|3|sense MSMS UPN48_class_I_Rep_1 5 561.3031616210938 2 561.291565 1120.56858 NaN NaN NaN NaN NaN NaN NaN 66.188 1 69.639 69.139 70.139 3.4516 0 0 0 0.53105 1 15117 15117 30.637 5.2372 1 + 13301 26582 8457 8463 16413 16413 0.013115090947394492 IDMTTTHTSI 10 Unmodified _IDMTTTHTSI_ 0 0 0 REV__L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|82|2|anti-sense REV__L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2713623046875 2 560.271164 1118.52777 NaN NaN NaN NaN NaN NaN NaN 87.292 1 90.733 90.233 91.233 3.4407 0 0 0 0.53105 1 21698 21698 3.2813 0 1 + 13302 28326 8458 8464 16414 16414 -0.0267483222487499 IDNIMLQYY 9 Unmodified _IDNIMLQYY_ 0 0 0 REV__LTR13_dup113|chr5:138410509-138411512:-|3.4710235557995333|0.0941994028682952|5.2|151.0|52|2|anti-sense REV__LTR13_dup113|chr5:138410509-138411512:-|3.4710235557995333|0.0941994028682952|5.2|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_2 3 586.7870483398438 2 586.78645 1171.55835 NaN NaN NaN NaN NaN NaN NaN 55.008 1 58.318 57.818 58.818 3.3102 0 0 0 0.39428 1 12481 12481 2.0598 0 1 + 13303 30827 8459 8465 16415 16415 -0.02057053839848777 IDNQIQKNK 9 Unmodified _IDNQIQKNK_ 0 0 0 REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|67|3|sense REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|67|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.8075561523438 2 550.806562 1099.59857 -0.024504 -1.3497E-05 0.4212 0.000232 0.39669 0.0002185 550.8068014163662 31.778 0.43771 35.508 35.32 35.758 3.7293 52 33 2 0 0 0 0.26948 1 5387 5387 15.847 0.5987 1 101240 + 13304 25066 8460 8466 16416 16416 0.052756288749378655 IDNQIQKNK 9 Unmodified _IDNQIQKNK_ 0 0 0 REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|67|3|sense REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|67|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.80712890625 2 550.806562 1099.59857 -0.15794 -8.6995E-05 0.34486 0.00018995 0.18692 0.00010296 550.806769335657 32.267 0.6061 35.554 35.231 35.837 3.2867 78 46 3 0 0 0 0.28552 1 5610 5610 14.838 0.43289 1 97108 + 13305 25066 8460 8466 16417 16417 0.052756288749378655 IDQGIDFNK 9 Unmodified _IDQGIDFNK_ 0 0 0 REV__ENST00000416120.1_1_6:64259201-64259360:-|nuORF REV__ENST00000416120.1_1_6:64259201-64259360:-|nuORF MSMS UPN47_class_I_Rep_3 4 525.2669067382812 2 525.266739 1048.51892 NaN NaN NaN NaN NaN NaN NaN 36.839 1 40.086 39.586 40.586 3.247 0 0 0 0.37692 1 6993 6993 6.2058 0 1 + 13306 22219 8461 8467 16418 16418 -0.00339437799038933 IDQNKIHWW 9 Unmodified _IDQNKIHWW_ 0 0 0 MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|55|1|anti-sense MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|55|1|anti-sense MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3178100585938 2 620.317097 1238.61964 NaN NaN NaN NaN NaN NaN NaN 38.867 1 42.597 42.097 43.097 3.7297 0 0 0 0.4007 1 6827 6827 0.52476 0 1 13307 16576 8462 8468 16419 16419 0.00987638974447691 IDRLSWVMT 9 Unmodified _IDRLSWVMT_ 0 0 0 REV__ENST00000455858.2_2_12:117387477-117402521:+|nuORF REV__ENST00000455858.2_2_12:117387477-117402521:+|nuORF MSMS UPN48_class_I_Rep_2 6 560.7962646484375 2 560.794609 1119.57467 NaN NaN NaN NaN NaN NaN NaN 76.889 1 80.5 80 81 3.6116 0 0 0 0.38784 1 18168 18168 3.5965 0 1 + 13308 22408 8463 8469 16420 16420 0.01966072116920259 IDRPLARLA 9 Unmodified _IDRPLARLA_ 0 0 0 L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|107|3|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|107|3|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|107|3|sense MSMS UPN47_class_I_Rep_2 3 512.816162109375 2 512.816733 1023.61891 NaN NaN NaN NaN NaN NaN NaN 41.011 1 44.376 43.876 44.876 3.3655 0 0 0 0.38916 1 8222 8222 3.2813 0 1 13309 15190 8464 8470 16421 16421 0.10804844325423346 IDRRESPIA 9 Unmodified _IDRRESPIA_ 0 0 0 REV__ENST00000360110.8_2_3:195803956-195809047:-|nuORF REV__ENST00000360110.8_2_3:195803956-195809047:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.7929077148438 2 528.793455 1055.57236 -0.10705 -5.6608E-05 0.21013 0.00011112 0.10308 5.4508E-05 528.793486868261 30.834 0.5421 34.579 34.338 34.88 3.7449 76 45 2 0 0 0 0.30034 1 5096 5096 13.906 0 1 118610 + 13310 21893 8465 8471 16422 16422 0.04679359703482078 IDRSLVRL 8 Unmodified _IDRSLVRL_ 0 0 0 L1MA3_dup6549|chr11:93708037-93711481:-|3.518193374511685|0.1507166722296533|4.54|151.0|81|3|sense;L1PB1_dup5548|chr7:7192147-7196026:-|1.5618346043747366|0.0494147812659261|4.98|151.0|10|1|sense L1MA3_dup6549|chr11:93708037-93711481:-|3.518193374511685|0.1507166722296533|4.54|151.0|81|3|sense L1MA3_dup6549|chr11:93708037-93711481:-|3.518193374511685|0.1507166722296533|4.54|151.0|81|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.30328369140625 2 486.303458 970.592364 -0.14549 -7.0752E-05 0.073791 3.5885E-05 -0.071699 -3.4868E-05 486.30338061976215 41.681 1.3854 45.047 44.598 45.984 3.3655 239 106 4 0 0 0 0.82752 1 8434 8434 25.399 0 1 802090 13311 9610 8466 8472 16423 16423 0.10589155434104214 IDSDSGYLTY 10 Unmodified _IDSDSGYLTY_ 0 0 0 REV__L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|2|1|sense REV__L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.2540893554688 2 567.253494 1132.49243 0.51889 0.00029434 -0.099408 -5.639E-05 0.41948 0.00023795 567.2534167151244 57.214 0.65808 60.505 60.218 60.876 3.2912 102 55 2 0 0 0 0.30832 4 13127 13084;13127;13169;13237 30.637 30.637 1 349650 + 13312 26511 8467 8473 16424;16425;16426;16427 16425 -0.06851171481048368 IDSDSGYLTY 10 Unmodified _IDSDSGYLTY_ 0 0 0 REV__L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|2|1|sense REV__L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.2538452148438 2 567.253494 1132.49243 0.36924 0.00020945 0.12965 7.3545E-05 0.49889 0.000283 567.2534598425395 57.284 0.84097 60.452 60.17 61.011 3.1681 143 73 3 0 0 0 0.35076 2 13196 13196;13257 24.021 24.021 1 316420 + 13313 26511 8467 8473 16428;16429 16428 -0.06851171481048368 IDSIRSQQLG 10 Unmodified _IDSIRSQQLG_ 0 0 0 REV__ENSG00000101680|ENST00000389658|LAMA1 REV__ENSG00000101680|ENST00000389658|LAMA1 MULTI-MSMS UPN48_class_I_Rep_1 5 558.8038330078125 2 558.80402 1115.59349 0.49017 0.00027391 -0.36312 -0.00020291 0.12705 7.0998E-05 558.8035310103853 39.792 0.31436 43.297 43.135 43.45 3.5048 38 31 2 0 0 0 0.56189 1 7076 7076 2.4985 0 1 89250 + 13314 18171 8468 8474 16430 16430 0.040313250123290345 IDSRFCRLY 9 Unmodified _IDSRFCRLY_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSMS UPN46_class_I_Rep_3 1 586.80078125 2 586.797683 1171.58081 NaN NaN NaN NaN NaN NaN NaN 53.513 1 53.513 53.013 54.013 0 0 0 0 0.35339 1 11520 11520 7.9102 0.62092 1 13315 16536 8469 8475 16431 16431 0.0018859034844354028 IDTSPKMYRW 10 Unmodified _IDTSPKMYRW_ 0 0 0 L1MC1_dup11183|chr15:56211240-56212683:+|1.6854771680941074|0.0193069786359904|6.45|151.0|5|1|sense L1MC1_dup11183|chr15:56211240-56212683:+|1.6854771680941074|0.0193069786359904|6.45|151.0|5|1|sense L1MC1_dup11183|chr15:56211240-56212683:+|1.6854771680941074|0.0193069786359904|6.45|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 432.8852233886719 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 100.51 1 104.37 103.87 104.87 3.8537 0 0 0 0.53105 1 23792 23792 0.77653 0 1 13316 11091 8470 8476 16432 16432 -0.0027487130862482445 IDTYADGTQY 10 Unmodified _IDTYADGTQY_ 0 0 0 L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|60|2|sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|60|2|sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|60|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.2530517578125 2 573.751118 1145.48768 0.047346 2.7165E-05 0.13748 7.888E-05 0.18483 0.00010605 573.7511150051771 22.351 0.7038 25.775 25.515 26.219 3.4241 116 70 2 0 0 0 0.56118 1 2577 2577 2.9952 0.26005 1 103450 13317 9508 8471 8477 16433 16433 -0.07924055623789172 IDVARVQL 8 Unmodified _IDVARVQL_ 0 0 0 ENST00000344651.4_1_12:121159001-121159205:+|nuORF ENST00000344651.4_1_12:121159001-121159205:+|nuORF ENST00000344651.4_1_12:121159001-121159205:+|nuORF MSMS UPN47_class_I_Rep_3 4 457.2890625 2 457.276909 912.539266 NaN NaN NaN NaN NaN NaN NaN 57.7 1 60.868 60.368 61.368 3.1681 0 0 0 0.3903 1 13352 13352 11.64 0 1 13318 6256 8472 8478 16434 16434 0.07949777651424483 IDVIHEDNIL 10 Unmodified _IDVIHEDNIL_ 0 0 0 REV__L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|34|2|anti-sense REV__L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 590.8137817382812 2 590.814053 1179.61355 0.45967 0.00027158 0.0094176 5.5641E-06 0.46909 0.00027714 590.8141609185532 68.971 0.73061 72.426 72.072 72.803 3.4548 79 55 2 0 0 0 0.4965 1 15984 15984 12.241 0.74595 1 278440 + 13319 27980 8473 8479 16435 16435 0.030930759523016604 IDVIHEDNIL 10 Unmodified _IDVIHEDNIL_ 0 0 0 REV__L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|34|2|anti-sense REV__L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 590.8143310546875 2 590.814053 1179.61355 0.48745 0.00028799 -0.020569 -1.2152E-05 0.46688 0.00027584 590.8140313695034 68.746 0.70067 72.254 71.978 72.679 3.5083 68 52 2 0 0 0 0.43106 1 15873 15873 17.113 0.96379 1 744290 + 13320 27980 8473 8479 16436 16436 0.030930759523016604 IDVIHEDNIL 10 Unmodified _IDVIHEDNIL_ 0 0 0 REV__L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|34|2|anti-sense REV__L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 590.8137817382812 2 590.814053 1179.61355 0.57474 0.00033956 0.038465 2.2726E-05 0.6132 0.00036229 590.8140063452264 68.659 0.82403 72.168 71.852 72.676 3.5094 105 62 2 0 0 0 0.52562 2 15695 15695;15813 8.7454 0.54658 1 222300 + 13321 27980 8473 8479 16437;16438 16437 0.030930759523016604 IDVIRRKVSK 10 Unmodified _IDVIRRKVSK_ 0 0 0 ENSG00000047634|ENST00000380041|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1 ENSG00000047634|ENST00000380041|SCML1 ENSG00000047634|ENST00000380041|SCML1 MSMS UPN48_class_I_Rep_3 7 405.2637634277344 3 405.262823 1212.76664 NaN NaN NaN NaN NaN NaN NaN 100.23 1 104.09 103.59 104.59 3.8537 0 0 0 0.53105 1 23733 23733 0.62683 0 1 13322 889 8474 8480 16439 16439 0.16876735859386827 IDVKKYLI 8 Unmodified _IDVKKYLI_ 0 0 0 L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|51|3|sense L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|51|3|sense L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.31268310546875 2 496.312961 990.611368 -0.010796 -5.3582E-06 0.010952 5.4355E-06 0.0001557 7.7274E-08 496.3128675444192 49.111 0.6398 52.77 52.487 53.127 3.6592 66 47 2 0 0 0 0.82752 2 10650 10650;10697 8.5933 0 1 149320 13323 8703 8475 8481 16440;16441 16440 0.11568692005130288 IDVPISIK 8 Unmodified _IDVPISIK_ 0 0 0 REV__nc|ENSG00000163468|P49368-2|CCT3 REV__nc|ENSG00000163468|P49368-2|CCT3 MSMS UPN48_class_I_Rep_3 7 442.7762451171875 2 442.776211 883.537869 NaN NaN NaN NaN NaN NaN NaN 56.286 1 59.828 59.328 60.328 3.5427 0 0 0 0.40604 1 12008 12008 2.5775 0 1 + 13324 19977 8476 8482 16442 16442 0.09144143562673435 IDVRKKLN 8 Unmodified _IDVRKKLN_ 0 0 0 REV__L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|59|3|sense REV__L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|59|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.31146240234375 2 493.311284 984.608014 0.038701 1.9092E-05 -0.14814 -7.3077E-05 -0.10944 -5.3986E-05 493.3111392519659 44.886 0.75255 48.242 48.006 48.759 3.3556 65 45 2 0 0 0 0.82752 1 9433 9433 11.64 0.81637 1 111630 + 13325 25474 8477 8483 16443 16443 0.11509441951125154 IDVRRTLQP 9 Unmodified _IDVRRTLQP_ 0 0 0 L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|33|3|sense L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|33|3|sense L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|33|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 548.8238525390625 2 549.324922 1096.63529 0.31832 0.00017486 0.43679 0.00023994 0.7551 0.0004148 549.3251027206475 59.797 0.39859 59.797 59.432 59.831 0 62 48 2 0 0 0 0.11425 1 13206 13206 12.532 0 1 3440900 13326 13072 8478 8484 16444 16444 0.0908392549151813 IDVTIPLTSLK 11 Unmodified _IDVTIPLTSLK_ 0 0 0 REV__ENSG00000011007|ENST00000613537|ELOA REV__ENSG00000011007|ENST00000613537|ELOA MULTI-MSMS UPN48_class_I_Rep_2 6 400.91461181640625 3 400.579706 1198.71729 0.082146 3.2906E-05 0.78975 0.00031636 0.87189 0.00034926 400.5798267194602 104.31 0.048683 108.01 107.98 108.03 3.6991 7 5 2 0 0 0 0.46055 1 24687 24687 8.7518 4.9059 1 3241100 + 13327 17575 8479 8485 16445 16445 0.1258798305993878 IDVTIPLTSLK 11 Unmodified _IDVTIPLTSLK_ 0 0 0 REV__ENSG00000011007|ENST00000613537|ELOA REV__ENSG00000011007|ENST00000613537|ELOA MULTI-MATCH UPN48_class_I_Rep_1 5 3 400.579706 1198.71729 -0.14471 -5.7969E-05 1.1064 0.0004432 0.96167 0.00038523 400.9144110809103 104.38 0.029602 108.01 107.99 108.02 3.6247 -0.0028769 3.8397E-05 NaN 8.7518 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1693200 + 13328 17575 8479 8485 0.1258798305993878 IDVYYNTYL 9 Unmodified _IDVYYNTYL_ 0 0 0 REV__L1MB7_dup17766|chr14:102671667-102672215:-|1.0481033146682612|0.0080908088695301|7.02|150.0|31|1|anti-sense REV__L1MB7_dup17766|chr14:102671667-102672215:-|1.0481033146682612|0.0080908088695301|7.02|150.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3238525390625 2 582.284597 1162.55464 NaN NaN NaN NaN NaN NaN NaN 49.376 1 52.61 52.11 53.11 3.2345 0 0 0 0.39598 1 10817 10817 1.6526 0.17072 1 + 13329 26174 8480 8486 16446 16446 -0.020134003420253066 IDWKITFGFDL 11 Unmodified _IDWKITFGFDL_ 0 0 0 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 MSMS UPN47_class_I_Rep_3 4 452.2684326171875 3 452.239573 1353.69689 NaN NaN NaN NaN NaN NaN NaN 13.699 1 17.072 16.572 17.572 3.3734 0 0 0 0.38417 1 370 370 0.50596 0.23694 1 + 13330 19174 8481 8487 16447 16447 0.034188124001275355 IEAALRESL 9 Unmodified _IEAALRESL_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;nc|ENSG00000112576|P30281-3|CCND3;nc|ENSG00000112576|P30281-4|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN46_class_I_Rep_3 1 501.2850341796875 2 501.284931 1000.55531 0.26274 0.00013171 0.1801 9.0279E-05 0.44283 0.00022199 501.285022585758 48.889 0.53589 48.889 48.628 49.164 0 68 50 3 0 0 0 0.071184 1 10226 10226 40.725 5.7928 1 554930 13331 2019 8482 8488 16448 16448 0.05505439097669296 IEAIIKSLPVK 11 Unmodified _IEAIIKSLPVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|139|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|139|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|139|2|sense MSMS UPN48_class_I_Rep_2 6 404.26336669921875 3 404.26383 1209.76966 NaN NaN NaN NaN NaN NaN NaN 68.943 1 72.46 71.96 72.96 3.5177 0 0 0 0.38417 1 15936 15936 0.50596 0 1 13332 9649 8483 8489 16449 16449 0.17316566193539984 IEAQKREIF 9 Unmodified _IEAQKREIF_ 0 0 0 REV__nc|ENSG00000151332|Q9NS73-3|MBIP REV__nc|ENSG00000151332|Q9NS73-3|MBIP MULTI-MSMS UPN48_class_I_Rep_1 5 567.3185424804688 2 567.319306 1132.62406 0.41218 0.00023384 -0.19113 -0.00010843 0.22105 0.00012541 567.3190481444375 46.123 0.7818 49.642 49.244 50.026 3.5192 67 52 2 0 0 0 0.30034 1 9011 9011 13.906 2.4113 1 185900 + 13333 19653 8484 8490 16450 16450 0.06305103397380662 IECIHGFVCV 10 Unmodified _IECIHGFVCV_ 0 0 0 REV__L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|90|1|anti-sense REV__L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.294189453125 2 560.269912 1118.52527 NaN NaN NaN NaN NaN NaN NaN 51.21 1 54.821 54.321 55.321 3.6105 0 0 0 0.53105 1 10471 10471 1.6526 0.17072 1 + 13334 25656 8485 8491 16451 16451 -0.029249591635334582 IEDLSYNLL 9 Unmodified _IEDLSYNLL_ 0 0 0 L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|55|3|sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|55|3|sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|55|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.284912109375 2 540.284597 1078.55464 0.4036 0.00021806 0.0091186 4.9267E-06 0.41272 0.00022299 540.2845732501473 79.657 0.39397 83.206 83.039 83.432 3.5487 79 44 2 0 0 0 0.20317 1 18999 18999 20.415 1.0526 1 192390 13335 12097 8486 8492 16452 16452 0.018505996579506245 IEDLSYNLL 9 Unmodified _IEDLSYNLL_ 0 0 0 L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|55|3|sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|55|3|sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|55|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 540.284597 1078.55464 0.47004 0.00025396 -0.019174 -1.036E-05 0.45087 0.0002436 540.284560445081 79.65 0.52892 83.283 82.907 83.436 3.6331 0.022085 5.3679E-05 NaN 20.415 122 59 3 NaN NaN NaN NaN 0 NaN NaN 0 292300 13336 12097 8486 8492 0.018505996579506245 IEDNNTLVF 9 Unmodified _IEDNNTLVF_ 0 0 0 ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A ENST00000416139.1_1_1:212482446-212482779:-|nuORF ENST00000416139.1_1_1:212482446-212482779:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.7666015625 2 532.766571 1063.51859 0.28102 0.00014972 -0.29582 -0.0001576 -0.014793 -7.8812E-06 532.7664030961287 66.693 0.44969 66.693 66.512 66.962 0 66 49 2 0 0 0 0.066633 1 15153 15153 41.84 9.5341 1 152440 13337 5423 8487 8493 16453 16453 -0.010628575189002731 IEDYSWTF 8 Unmodified _IEDYSWTF_ 0 0 0 ENST00000548520.1_1_12:104283206-104286955:-|nuORF;ENST00000551270.1_1_12:104283206-104309165:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P ENST00000548520.1_1_12:104283206-104286955:-|nuORF ENST00000548520.1_1_12:104283206-104286955:-|nuORF MSMS UPN46_class_I_Rep_3 1 530.2904663085938 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 118.07 1 118.07 117.57 118.57 0 0 0 0 0.40746 1 29292 29292 0.69038 0 1 13338 7390 8488 8494 16454 16454 -0.07242217955990782 IEDYSWTF 8 Unmodified _IEDYSWTF_ 0 0 0 ENST00000548520.1_1_12:104283206-104286955:-|nuORF;ENST00000551270.1_1_12:104283206-104309165:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P ENST00000548520.1_1_12:104283206-104286955:-|nuORF ENST00000548520.1_1_12:104283206-104286955:-|nuORF MSMS UPN47_class_I_Rep_1 2 530.734619140625 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 22.803 1 26.507 26.007 27.007 3.7042 0 0 0 0.40604 1 2712 2712 2.5775 0 1 13339 7390 8488 8494 16455 16455 -0.07242217955990782 IEEKFWYF 8 Unmodified _IEEKFWYF_ 0 0 0 REV__L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|27|2|sense REV__L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|27|2|sense MSMS UPN47_class_I_Rep_3 4 581.2520751953125 2 581.2844 1160.55425 NaN NaN NaN NaN NaN NaN NaN 83.817 1 87.167 86.667 87.667 3.35 0 0 0 0.40604 1 21028 21028 2.5775 0.51773 1 + 13340 25812 8489 8495 16456 16456 -0.019607752712545334 IEFAKLNQ 8 Unmodified _IEFAKLNQ_ 0 0 0 REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF MSMS UPN48_class_I_Rep_1 5 481.7687072753906 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 54.635 1 58.15 57.65 58.65 3.5143 0 0 0 0.3903 1 11587 11587 11.64 1.5664 1 + 13341 23226 8490 8496 16457 16457 0.040980714145121055 IEFAKLNQ 8 Unmodified _IEFAKLNQ_ 0 0 0 REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF MSMS UPN48_class_I_Rep_2 6 481.7685241699219 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 54.525 1 58.106 57.606 58.606 3.5817 0 0 0 0.39819 1 11533 11533 8.5933 0 1 + 13342 23226 8490 8496 16458 16458 0.040980714145121055 IEFKVWRDR 9 Unmodified _IEFKVWRDR_ 0 0 0 REV__ENST00000560983.1_1_15:64010754-64015453:-|nuORF REV__ENST00000560983.1_1_15:64010754-64015453:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 416.2277526855469 3 416.899773 1247.67749 -0.13038 -5.4355E-05 -1.1346 -0.000473 -1.2649 -0.00052735 416.9008295572527 32.096 0.14168 32.096 31.976 32.118 0 12 10 2 0 0 0 0.12531 1 5448 5448 0.77653 0 1 30884 + 13343 23023 8491 8497 16459 16459 0.0635590089989364 IEFPTTNLY 9 Unmodified _IEFPTTNLY_ 0 0 0 ENSG00000162402|ENST00000294383|USP24;ENSG00000162402.14,USP24,chr1,-,I37.1,55121507,55123446|29|10.46|5|intron ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MSMS UPN46_class_I_Rep_3 1 549.279296875 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 77.08 1 77.08 76.58 77.58 0 0 0 0 0.37692 1 18004 18004 6.2058 0 1 13344 3927 8492 8498 16460 16460 -0.0003338299648021348 IEFVHQTF 8 Unmodified _IEFVHQTF_ 0 0 0 REV__L1ME2_dup12676|chr22:40612958-40613575:-|1.0649767060654798|0.0081522458524995|7.03|151.0|29|1|anti-sense REV__L1ME2_dup12676|chr22:40612958-40613575:-|1.0649767060654798|0.0081522458524995|7.03|151.0|29|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.76153564453125 2 510.761092 1019.50763 0.23392 0.00011948 -0.062215 -3.1777E-05 0.17171 8.7701E-05 510.76102504420084 57.303 0.54529 57.303 57.075 57.62 0 92 57 2 0 0 0 0.82752 1 12621 12621 11.64 0 1 253220 + 13345 27830 8493 8499 16461 16461 -0.001342151025255589 IEGFYYEWM 9 Unmodified _IEGFYYEWM_ 0 0 0 L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|37|1|anti-sense L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|37|1|anti-sense L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_3 7 619.2631225585938 2 619.26535 1236.51615 NaN NaN NaN NaN NaN NaN NaN 20.271 1 23.893 23.393 24.393 3.6215 0 0 0 0.4007 1 1692 1692 0.52476 0 1 13346 9886 8494 8500 16462 16462 -0.09265029248240353 IEGTDTREY 9 Unmodified _IEGTDTREY_ 0 0 0 REV__ENSG00000142599|ENST00000400908|RERE REV__ENSG00000142599|ENST00000400908|RERE MULTI-MSMS UPN46_class_I_Rep_3 1 542.2515258789062 2 542.251286 1082.48802 -0.2161 -0.00011718 0.13509 7.3255E-05 -0.08101 -4.3928E-05 542.2512774704483 15.165 0.65807 15.165 15.029 15.687 0 143 76 3 0 0 0 0.20276 1 822 822 20.454 0 1 170510 + 13347 19409 8495 8501 16463 16463 -0.04992635903931841 IEGYFDEKF 9 Unmodified _IEGYFDEKF_ 0 0 0 REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 574.269287109375 2 574.268947 1146.52334 0.55878 0.00032089 0.97817 0.00056174 1.537 0.00088262 574.2687666224151 61.734 0.9295 65.202 64.864 65.793 3.4678 163 84 3 0 0 0 0.090251 2 13747 13747;13786 36.127 1.7253 1 448730 + 13348 19121 8496 8502 16464;16465 16464 -0.044059733761287134 IEGYFDEKF 9 Unmodified _IEGYFDEKF_ 0 0 0 REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 574.2691650390625 2 574.268947 1146.52334 0.53762 0.00030874 -0.19834 -0.0001139 0.33928 0.00019484 574.2687693629782 61.631 0.99258 65.105 64.698 65.69 3.4738 152 82 2 0 0 0 0.16559 3 13698 13658;13698;13775 24.021 3.6513 1 518940 + 13349 19121 8496 8502 16466;16467;16468 16467 -0.044059733761287134 IEGYFDEKF 9 Unmodified _IEGYFDEKF_ 0 0 0 REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 574.26904296875 2 574.268947 1146.52334 0.47687 0.00027385 0.65047 0.00037354 1.1273 0.0006474 574.2687769678308 61.459 0.9514 64.972 64.605 65.557 3.5128 181 80 3 0 0 0 0.16559 3 13594 13515;13594;13670 24.021 2.4836 1 548760 + 13350 19121 8496 8502 16469;16470;16471 16470 -0.044059733761287134 IEHGIITNW 9 Unmodified _IEHGIITNW_ 0 0 0 ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF ENSG00000163017|ENST00000345517|ACTG2 ENSG00000163017|ENST00000345517|ACTG2 MULTI-MSMS UPN47_class_I_Rep_1 2 541.7852172851562 2 541.785099 1081.55564 0.25232 0.0001367 -0.10426 -5.6485E-05 0.14807 8.022E-05 541.7850041228644 49.444 2.0136 53.103 52.659 54.673 3.6592 290 114 4 0 0 0 0.0055465 2 10813 10813;11103 78.149 13.913 1 2097200 13351 1832 8497 8503 16472;16473 16472 0.01812858817538654 IEHGIITNW 9 Unmodified _IEHGIITNW_ 0 0 0 ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF ENSG00000163017|ENST00000345517|ACTG2 ENSG00000163017|ENST00000345517|ACTG2 MULTI-MSMS UPN47_class_I_Rep_2 3 541.7852172851562 2 541.785099 1081.55564 0.38895 0.00021073 -0.2013 -0.00010906 0.18764 0.00010166 541.7849244639991 49.802 1.5021 53.145 52.702 54.204 3.3431 226 83 4 0 0 0 0.0059033 2 10878 10878;10917 81.89 17.654 1 1658900 13352 1832 8497 8503 16474;16475 16474 0.01812858817538654 IEHIVAETY 9 Unmodified _IEHIVAETY_ 0 0 0 REV__ENSG00000197838|ENST00000330436|CYP2A13 REV__ENSG00000197838|ENST00000330436|CYP2A13 MULTI-MSMS UPN47_class_I_Rep_1 2 537.7770385742188 2 537.776939 1073.53933 0.33109 0.00017805 -0.3468 -0.0001865 -0.015703 -8.4449E-06 537.7768712401158 54.194 0.59222 57.695 57.453 58.046 3.5014 34 27 2 0 0 0 0.28552 1 12263 12263 14.838 0 1 75874 + 13353 21100 8498 8504 16476 16476 0.005497328607589225 IEHIVAETY 9 Unmodified _IEHIVAETY_ 0 0 0 REV__ENSG00000197838|ENST00000330436|CYP2A13 REV__ENSG00000197838|ENST00000330436|CYP2A13 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 537.776939 1073.53933 0.33109 0.00017805 -0.3468 -0.0001865 -0.015703 -8.4449E-06 537.7768712401158 54.194 0.59222 57.695 57.453 58.046 3.5014 -0.056732 -0.00014767 NaN 14.838 34 27 2 NaN NaN NaN NaN 0 NaN NaN 0 75874 + 13354 21100 8498 8504 0.005497328607589225 IEHIVAETY 9 Unmodified _IEHIVAETY_ 0 0 0 REV__ENSG00000197838|ENST00000330436|CYP2A13 REV__ENSG00000197838|ENST00000330436|CYP2A13 MULTI-MATCH UPN47_class_I_Rep_2 3 2 537.776939 1073.53933 0.46126 0.00024805 -0.23583 -0.00012682 0.22543 0.00012123 537.7768317884039 54.42 0.53405 57.739 57.529 58.063 3.3187 -0.013016 -2.8321E-05 NaN 14.838 41 26 2 NaN NaN NaN NaN 0 NaN NaN 0 105810 + 13355 21100 8498 8504 0.005497328607589225 IEHIVAETY 9 Unmodified _IEHIVAETY_ 0 0 0 REV__ENSG00000197838|ENST00000330436|CYP2A13 REV__ENSG00000197838|ENST00000330436|CYP2A13 MULTI-MATCH UPN47_class_I_Rep_3 4 2 537.776939 1073.53933 0.42539 0.00022877 -0.050593 -2.7208E-05 0.3748 0.00020156 537.776910576683 54.636 0.55524 57.822 57.538 58.093 3.1856 0.069748 0.00017091 NaN 14.838 48 30 2 NaN NaN NaN NaN 0 NaN NaN 0 85287 + 13356 21100 8498 8504 0.005497328607589225 IEHMLGQKTNL 11 Unmodified _IEHMLGQKTNL_ 0 0 0 L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|75|3|sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|75|3|sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|75|3|sense MSMS UPN48_class_I_Rep_3 7 642.3445434570312 2 642.342455 1282.67036 NaN NaN NaN NaN NaN NaN NaN 57.353 1 60.884 60.384 61.384 3.5317 0 0 0 0.38417 1 12330 12330 1.0715 0.10919 1 13357 15233 8499 8505 16477 16477 0.0403280023717798 IEHSRFNS 8 Unmodified _IEHSRFNS_ 0 0 0 ENSG00000147246|ENST00000276198|HTR2C ENSG00000147246|ENST00000276198|HTR2C ENSG00000147246|ENST00000276198|HTR2C MSMS UPN47_class_I_Rep_3 4 495.2447204589844 2 495.243598 988.472643 NaN NaN NaN NaN NaN NaN NaN 20.117 1 23.468 22.968 23.968 3.3514 0 0 0 0.40746 1 2014 2014 0.69038 0 1 13358 3468 8500 8506 16478 16478 -0.022054579104633376 IEHSRYLSL 9 Unmodified _IEHSRYLSL_ 0 0 0 nc|ENSG00000184012|O15393-2|TMPRSS2 nc|ENSG00000184012|O15393-2|TMPRSS2 nc|ENSG00000184012|O15393-2|TMPRSS2 MULTI-MSMS UPN47_class_I_Rep_1 2 559.3042602539062 2 559.303655 1116.59276 -0.0022304 -1.2474E-06 0.018164 1.0159E-05 0.015934 8.9117E-06 559.303725836668 41.008 0.57773 44.68 44.493 45.071 3.6719 81 46 2 0 0 0 0.47197 1 8147 8147 3.5965 0 1 107510 13359 16773 8501 8507 16479 16479 0.03912530363299993 IEHVGYIYI 9 Unmodified _IEHVGYIYI_ 0 0 0 REV__L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|253|2|anti-sense REV__L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|253|2|anti-sense MSMS UPN47_class_I_Rep_1 2 553.8139038085938 2 553.797675 1105.5808 NaN NaN NaN NaN NaN NaN NaN 57.46 1 60.897 60.397 61.397 3.437 0 0 0 0.26661 1 13196 13196 12.532 0 1 + 13360 24979 8502 8508 16480 16480 0.03222913620084 IEIHPVSKP 9 Unmodified _IEIHPVSKP_ 0 0 0 REV__L1ME3_dup6471|chr12:64645738-64646396:-|2.245817687099516|0.0120681899801725|7.54|151.0|36|2|anti-sense REV__L1ME3_dup6471|chr12:64645738-64646396:-|2.245817687099516|0.0120681899801725|7.54|151.0|36|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.29766845703125 2 510.297842 1018.58113 0.36419 0.00018585 -0.67928 -0.00034664 -0.31509 -0.00016079 510.29754362691085 63.128 0.298 66.602 66.45 66.748 3.4738 27 23 2 0 0 0 0.46869 1 14181 14181 3.9444 0.3479 1 87263 + 13361 27962 8503 8509 16481 16481 0.07258333339962064 IEIIKSTSLLT 11 Unmodified _IEIIKSTSLLT_ 0 0 0 REV__L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|15|3|sense REV__L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 406.5844421386719 3 406.583228 1216.72785 NaN NaN NaN NaN NaN NaN NaN 104.67 1 108.44 107.94 108.94 3.7627 0 0 0 0.38417 1 25706 25706 1.2148 0.70888 1 + 13362 28884 8504 8510 16482 16482 0.12815965714389677 IEIIWLPFFP 10 Unmodified _IEIIWLPFFP_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|276|2|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|276|2|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|276|2|anti-sense MSMS UPN46_class_I_Rep_3 1 637.8607788085938 2 637.862818 1273.71108 NaN NaN NaN NaN NaN NaN NaN 48.197 1 48.197 47.697 48.697 0 0 0 0 0.53105 1 10020 10020 0.45834 0.057624 1 13363 14146 8505 8511 16483 16483 0.08517509619059638 IEIKGIQIG 9 Unmodified _IEIKGIQIG_ 0 0 0 L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.7999267578125 2 485.800217 969.585882 0.14117 6.8578E-05 0.32597 0.00015836 0.46714 0.00022693 485.8004001254767 62.768 0.42146 66.127 65.768 66.189 3.3595 31 23 2 0 0 0 0.42249 1 14739 14739 6.7232 0 1 87182 13364 13827 8506 8512 16484 16484 0.09987217482716915 IEIKGIQIG 9 Unmodified _IEIKGIQIG_ 0 0 0 L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.81158447265625 2 485.800217 969.585882 0.11679 5.6734E-05 0.6335 0.00030776 0.75029 0.00036449 485.8006576213102 63.09 0.39245 66.26 65.994 66.386 3.1698 29 24 2 0 0 0 0.42249 1 14949 14949 6.7232 0 1 62164 13365 13827 8506 8512 16485 16485 0.09987217482716915 IEIKGIQIG 9 Unmodified _IEIKGIQIG_ 0 0 0 L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 485.800217 969.585882 0.14117 6.8578E-05 0.32597 0.00015836 0.46714 0.00022693 485.8004001254767 62.768 0.42146 66.127 65.768 66.189 3.3595 -0.066364 -0.0001185 NaN 6.7232 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 87182 13366 13827 8506 8512 0.09987217482716915 IEIKGIQIG 9 Unmodified _IEIKGIQIG_ 0 0 0 L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|42|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 485.800217 969.585882 0.11679 5.6734E-05 0.6335 0.00030776 0.75029 0.00036449 485.8006576213102 63.09 0.39245 66.26 65.994 66.386 3.1698 0.066364 0.0001803 NaN 6.7232 29 24 2 NaN NaN NaN NaN 0 NaN NaN 0 62164 13367 13827 8506 8512 0.09987217482716915 IEIKIYNSFR 10 Unmodified _IEIKIYNSFR_ 0 0 0 L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 641.8565673828125 2 641.861338 1281.70812 NaN NaN NaN NaN NaN NaN NaN 108.05 1 108.05 107.55 108.55 0 0 0 0 0.53105 1 26385 26385 8.1555 0 1 13368 10812 8507 8513 16486 16486 0.0785363449426768 IEIKIYNSFR 10 Unmodified _IEIKIYNSFR_ 0 0 0 L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 641.8593139648438 2 641.861338 1281.70812 NaN NaN NaN NaN NaN NaN NaN 105.85 1 109.38 108.88 109.88 3.5345 0 0 0 0.53105 1 25657 25657 8.1555 0 1 13369 10812 8507 8513 16487 16487 0.0785363449426768 IEIKIYNSFR 10 Unmodified _IEIKIYNSFR_ 0 0 0 L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 641.8599243164062 2 641.861338 1281.70812 NaN NaN NaN NaN NaN NaN NaN 103.72 1 107.24 106.74 107.74 3.5205 0 0 0 0.53105 1 25440 25440 8.1555 0 1 13370 10812 8507 8513 16488 16488 0.0785363449426768 IEITNGKFNA 10 Unmodified _IEITNGKFNA_ 0 0 0 REV__ENSG00000100122|ENST00000647684|CRYBB1 REV__ENSG00000100122|ENST00000647684|CRYBB1 MSMS UPN47_class_I_Rep_2 3 553.7971801757812 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 38.365 1 41.753 41.253 42.253 3.3879 0 0 0 0.53105 1 7419 7419 2.9952 0.41776 1 + 13371 18089 8508 8514 16489 16489 0.028208241264110256 IEKAIQLRKYN 11 Unmodified _IEKAIQLRKYN_ 0 0 0 REV__L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|38|2|sense REV__L1MA9_dup6389|chr6:145860063-145862172:+|1.2430506476635714|0.3955723803159932|1.65|151.0|38|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 459.27972412109375 3 459.273388 1374.79833 0.13468 6.1856E-05 -3.0951 -0.0014215 -2.9604 -0.0013596 459.60731758139906 60.602 0.24371 60.602 60.48 60.724 0 38 29 2 0 0 0 0.67356 1 13453 13453 1.1098 0.096179 1 208350 + 13372 25638 8509 8515 16490 16490 0.12592683822731487 IEKDGLPDL 9 Unmodified _IEKDGLPDL_ 0 0 0 REV__nc|ENSG00000153071|P98082-2|DAB2 REV__nc|ENSG00000153071|P98082-2|DAB2 MSMS UPN47_class_I_Rep_3 4 500.2712707519531 2 500.27149 998.528426 NaN NaN NaN NaN NaN NaN NaN 64.991 1 68.17 67.67 68.67 3.1795 0 0 0 0.18866 1 15580 15580 17.113 1.2657 1 + 13373 19701 8510 8516 16491 16491 0.029103304864861457 IEKDKNRPLQI 11 Unmodified _IEKDKNRPLQI_ 0 0 0 REV__L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|159|3|sense REV__L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|159|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 451.9323425292969 3 451.933143 1352.7776 0.19031 8.6008E-05 -1.5113 -0.00068299 -1.321 -0.00059698 452.266751555056 96.578 0.14732 96.578 96.501 96.649 0 30 17 3 0 0 0 0.67356 1 23502 23502 1.1098 0.096179 1 187840 + 13374 24788 8511 8517 16492 16492 0.11532093443042868 IEKGRKKSF 9 Unmodified _IEKGRKKSF_ 0 0 0 L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|59|3|sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|59|3|sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|59|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.830322265625 2 546.82984 1091.64513 0.3992 0.00021829 -0.21351 -0.00011675 0.18569 0.00010154 546.8296294839336 45.69 0.75238 49.448 49.111 49.863 3.7579 89 56 2 0 0 0 0.46869 1 8895 8895 3.9444 0 1 148450 13375 10045 8512 8518 16493 16493 0.10297113496881138 IEKGTLTQR 9 Unmodified _IEKGTLTQR_ 0 0 0 REV__ENST00000604306.1_1_14:24684951-24700866:-|nuORF REV__ENST00000604306.1_1_14:24684951-24700866:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 523.303466796875 2 523.303655 1044.59276 0.36077 0.00018879 -0.36018 -0.00018849 0.00058247 3.0481E-07 523.3033199135757 80.002 1.3903 83.311 82.157 83.547 3.309 245 141 3 0 0 0 0.43982 1 19932 19932 5.7319 0.43497 1 459950 + 13376 22811 8513 8519 16494 16494 0.07224530363282611 IEKKEQQW 8 Unmodified _IEKKEQQW_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3 REV__nc|ENSG00000182670|P53804-3|TTC3 MSMS UPN46_class_I_Rep_3 1 544.355224609375 2 544.790381 1087.56621 NaN NaN NaN NaN NaN NaN NaN 12.044 1 12.044 11.544 12.544 0 0 0 0 0.40753 1 10 10 0.6015 0 1 + 13377 20761 8514 8520 16495 16495 0.025928414719373905 IEKKFFINLN 10 Unmodified _IEKKFFINLN_ 0 0 0 REV__L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|30|3|sense REV__L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 422.5816345214844 3 422.579929 1264.71796 NaN NaN NaN NaN NaN NaN NaN 92.536 1 92.536 92.036 93.036 0 0 0 0 0.53105 1 22396 22396 0.62683 0.063655 1 + 13378 24337 8515 8521 16496 16496 0.09618822499692214 IEKKKFVSY 9 Unmodified _IEKKKFVSY_ 0 0 0 REV__L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|5|1|sense REV__L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 571.3338012695312 2 571.334424 1140.6543 0.40646 0.00023223 -0.22669 -0.00012952 0.17977 0.00010271 571.3340907676652 44.189 0.70444 47.95 47.549 48.253 3.7617 80 51 2 0 0 0 0.48846 1 8435 8435 1.8442 0 1 130350 + 13379 25528 8516 8522 16497 16497 0.08959462062580315 IEKKKSLY 8 Unmodified _IEKKKSLY_ 0 0 0 REV__L1MA4A_dup5354|chr15:51561606-51562248:+|1.2910809936684513|0.0502228885733432|4.68|151.0|11|2|sense REV__L1MA4A_dup5354|chr15:51561606-51562248:+|1.2910809936684513|0.0502228885733432|4.68|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 504.8091125488281 2 504.808042 1007.60153 0.30393 0.00015342 2.5057 0.0012649 2.8096 0.0014183 504.8092641598374 108.6 0.061485 112.27 112.23 112.29 3.6746 8 2 4 0 0 0 0.82752 1 25775 25775 16.942 0.79319 1 11790000 + 13380 25321 8517 8523 16498 16498 0.09803503999751229 IEKKLFDLS 9 Unmodified _IEKKLFDLS_ 0 0 0 REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|11|1|sense REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 546.828857421875 2 546.818607 1091.62266 NaN NaN NaN NaN NaN NaN NaN 45.53 1 49.288 48.788 49.788 3.7579 0 0 0 0.38639 1 8800 8800 3.9444 0.66309 1 + 13381 28768 8518 8524 16499 16499 0.08051469308611559 IEKLFKEKVN 10 Unmodified _IEKLFKEKVN_ 0 0 0 REV__Tigger1_dup7959|chr10:21950120-21950999:+|1.7542418894768046|0.0060150887635554|8.19|151.0|6|1|sense REV__Tigger1_dup7959|chr10:21950120-21950999:+|1.7542418894768046|0.0060150887635554|8.19|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 624.3732299804688 2 624.371538 1246.72852 NaN NaN NaN NaN NaN NaN NaN 96.624 1 100.4 99.904 100.9 3.7804 0 0 0 0.53105 1 22954 22954 1.3295 0 1 + 13382 32533 8519 8525 16500 16500 0.11502805154077578 IEKLKERSS 9 Unmodified _IEKLKERSS_ 0 0 0 ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|3|intron;ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|1|intron;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|3|intron ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 545.3167114257812 2 545.316763 1088.61897 0.38188 0.00020824 0.091002 4.9625E-05 0.47288 0.00025787 545.3166971280117 85.668 0.19353 85.668 85.606 85.8 0 31 17 2 0 0 0 0.37599 1 20479 20479 9.3831 9.3831 1 1243200 13383 1532 8520 8526 16501 16501 0.07820799534761136 IEKLKERSS 9 Unmodified _IEKLKERSS_ 0 0 0 ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|3|intron;ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|1|intron;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|3|intron ENSG00000100815.12,TRIP11,chr14,-,I18.1,91977249,91988283|29|7.29|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 545.3168334960938 2 545.316763 1088.61897 0.47423 0.0002586 0.10344 5.6407E-05 0.57767 0.00031501 545.3166379261304 81.993 2.4989 85.505 84.364 86.863 3.5122 464 274 3 0 0 0 0.43982 1 20527 20527 5.7319 0.43497 1 499320 13384 1532 8520 8526 16502 16502 0.07820799534761136 IEKLLTSY 8 Unmodified _IEKLLTSY_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-SECPEP UPN46_class_I_Rep_3 1 483.64654541015625 2 483.778951 965.543348 0.21945 0.00010617 -0.0063024 -3.049E-06 0.21315 0.00010312 483.77887707169725 50.682 0.24954 50.682 50.538 50.788 0 40 29 2 0 0 0 0.72333 1 10725 10725 18.146 3.3081 1 179980 13385 745 8521 8527 16503 16503 0.05919822354474036 IEKLPIGSLH 10 Unmodified _IEKLPIGSLH_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|65|1|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|65|1|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|65|1|sense MSMS UPN47_class_I_Rep_2 3 553.8301391601562 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 82.563 1 85.962 85.462 86.462 3.3984 0 0 0 0.53105 1 20580 20580 1.3295 0 1 13386 13912 8522 8528 16504 16504 0.10094577919812764 IEKLTAYVY 9 Unmodified _IEKLTAYVY_ 0 0 0 REV__L1MB3_dup3792|chr3:196500001-196500645:+|1.5284715032437488|0.1309476170101009|3.55|151.0|24|1|anti-sense REV__L1MB3_dup3792|chr3:196500001-196500645:+|1.5284715032437488|0.1309476170101009|3.55|151.0|24|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.305419921875 2 550.305332 1098.59611 0.47723 0.00026262 -0.05872 -3.2314E-05 0.41851 0.00023031 550.3051408204067 109.23 0.3606 112.86 112.75 113.11 3.6321 108 44 3 0 0 0 0.46434 1 26552 26552 4.3292 0.38484 1 8766800 + 13387 25883 8523 8529 16505 16505 0.05075780417291753 IEKLTAYVY 9 Unmodified _IEKLTAYVY_ 0 0 0 REV__L1MB3_dup3792|chr3:196500001-196500645:+|1.5284715032437488|0.1309476170101009|3.55|151.0|24|1|anti-sense REV__L1MB3_dup3792|chr3:196500001-196500645:+|1.5284715032437488|0.1309476170101009|3.55|151.0|24|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 550.305332 1098.59611 0.62096 0.00034172 -0.23199 -0.00012766 0.38897 0.00021405 550.3049742349265 109.27 0.29784 112.8 112.68 112.97 3.5307 -0.061089 -0.00010157 NaN 4.3292 95 38 4 NaN NaN NaN NaN 0 NaN NaN 0 10441000 + 13388 25883 8523 8529 0.05075780417291753 IEKLTAYVY 9 Unmodified _IEKLTAYVY_ 0 0 0 REV__L1MB3_dup3792|chr3:196500001-196500645:+|1.5284715032437488|0.1309476170101009|3.55|151.0|24|1|anti-sense REV__L1MB3_dup3792|chr3:196500001-196500645:+|1.5284715032437488|0.1309476170101009|3.55|151.0|24|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 550.305332 1098.59611 0.49798 0.00027404 -0.20328 -0.00011187 0.2947 0.00016217 550.30505929321 109.26 0.33972 112.8 112.68 113.02 3.5347 -0.063088 -6.9979E-05 NaN 4.3292 118 45 3 NaN NaN NaN NaN 0 NaN NaN 0 9133700 + 13389 25883 8523 8529 0.05075780417291753 IEKMKCMHW 9 Unmodified _IEKMKCMHW_ 0 0 0 REV__L1MC5a_dup16588|chr21:33241258-33241615:+|2.273345553828655|0.3577150959962717|2.67|151.0|6|2|sense REV__L1MC5a_dup16588|chr21:33241258-33241615:+|2.273345553828655|0.3577150959962717|2.67|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 603.2840576171875 2 603.28504 1204.55553 NaN NaN NaN NaN NaN NaN NaN 116.21 1 119.87 119.37 120.37 3.6607 0 0 0 0.40038 1 27836 27836 0.6015 0.14316 1 + 13390 27144 8524 8530 16506 16506 -0.038569237699675796 IEKNLQRG 8 Unmodified _IEKNLQRG_ 0 0 0 REV__L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|12|1|sense REV__L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.2774963378906 2 479.277441 956.540328 0.22577 0.00010821 0.0038615 1.8507E-06 0.22963 0.00011006 479.2773538969423 75.109 0.28175 78.699 78.656 78.938 3.59 80 31 3 0 0 0 0.82752 1 17704 17704 4.3292 0 1 341290 + 13391 24548 8525 8531 16507 16507 0.06031992020336929 IEKQFLLY 8 Unmodified _IEKQFLLY_ 0 0 0 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 MULTI-MSMS UPN46_class_I_Rep_3 1 527.3024291992188 2 527.302593 1052.59063 0.2648 0.00013963 0.32508 0.00017142 0.58988 0.00031104 527.3028926785742 62.902 0.090832 62.902 62.857 62.947 0 14 9 2 0 0 0 0.82752 1 14095 14095 21.747 0 1 80764 13392 977 8526 8532 16508 16508 0.06644101625488474 IEKRESLYT 9 Unmodified _IEKRESLYT_ 0 0 0 L1MA7_dup6600|chr12:118201696-118202639:-|2.9732364351004925|0.0226212312379103|7.04|151.0|12|2|sense L1MA7_dup6600|chr12:118201696-118202639:-|2.9732364351004925|0.0226212312379103|7.04|151.0|12|2|sense L1MA7_dup6600|chr12:118201696-118202639:-|2.9732364351004925|0.0226212312379103|7.04|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 569.8079833984375 2 569.808771 1137.60299 0.47894 0.0002729 -0.17679 -0.00010074 0.30215 0.00017217 569.8086118699217 28.161 0.56669 31.718 31.46 32.026 3.5571 73 57 2 0 0 0 0.43153 1 3727 3727 6.2058 0.47393 1 85903 13393 10028 8527 8533 16509 16509 0.03969093297860127 IEKRINVKP 9 Unmodified _IEKRINVKP_ 0 0 0 REV__L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|17|2|sense REV__L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.846435546875 2 548.84549 1095.67643 0.48302 0.0002651 0.02222 1.2195E-05 0.50524 0.0002773 548.8454114364489 51.27 1.0705 54.938 54.207 55.277 3.6679 166 71 3 0 0 0 0.42249 2 10370 10370;10418 6.7232 0.51738 1 575530 + 13394 27285 8528 8534 16510;16511 16510 0.1324168653097786 IEKVFKGRF 9 Unmodified _IEKVFKGRF_ 0 0 0 nc|ENSG00000137872|Q8NFY4-7|SEMA6D;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D MULTI-MSMS UPN46_class_I_Rep_3 1 562.334716796875 2 562.334759 1122.65496 0.44459 0.00025001 0.020517 1.1537E-05 0.4651 0.00026154 562.3347176289997 108.83 0.70623 108.83 108.69 109.4 0 91 52 2 0 0 0 0.37599 2 26731 26731;26839 9.3831 2.66 1 38941000 13395 3051 8529 8535 16512;16513 16512 0.09854301502286944 IEKVFKGRF 9 Unmodified _IEKVFKGRF_ 0 0 0 nc|ENSG00000137872|Q8NFY4-7|SEMA6D;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.4452 0.00025035 0.20305 0.00011418 0.64825 0.00036454 562.3345963792227 109.69 0.56599 109.69 109.56 110.13 0 129 46 3 0 0 0 0.43153 1 27069 27069 6.2058 0.9089 1 8916000 13396 3051 8529 8535 16514 16514 0.09854301502286944 IEKVFKGRF 9 Unmodified _IEKVFKGRF_ 0 0 0 nc|ENSG00000137872|Q8NFY4-7|SEMA6D;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D MULTI-MSMS UPN47_class_I_Rep_1 2 562.3348388671875 2 562.334759 1122.65496 0.50588 0.00028447 0.69853 0.00039281 1.2044 0.00067728 562.3345050649632 108.66 0.44942 112.29 112.17 112.62 3.6355 162 46 4 0 0 0 0.43153 1 26713 26713 6.2058 1.8765 1 137640000 13397 3051 8529 8535 16515 16515 0.09854301502286944 IEKVVKAI 8 Unmodified _IEKVVKAI_ 0 0 0 Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|17|2|sense Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|17|2|sense Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.2993469238281 2 450.299853 898.585153 -0.5556 -0.00025019 -0.58039 -0.00026135 -1.136 -0.00051154 450.2993993201954 33.976 0.78178 37.416 37.084 37.866 3.4398 103 51 3 0 0 0 0.82752 1 6059 6059 5.2307 0 1 153900 13398 33322 8530 8536 16516 16516 0.13180422833659122 IELDPRFND 9 Unmodified _IELDPRFND_ 0 0 0 ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN47_class_I_Rep_2 3 559.7789916992188 2 559.77747 1117.54039 0.047399 2.6533E-05 0.060593 3.3919E-05 0.10799 6.0452E-05 559.7774472240612 22.471 0.43106 25.916 25.671 26.102 3.4447 59 40 2 0 0 0 0.48846 1 2649 2649 1.8442 0 1 49684 13399 5756 8531 8537 16517 16517 -0.013680527703172629 IELIHFYEL 9 Unmodified _IELIHFYEL_ 0 0 0 REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.3187255859375 2 588.818607 1175.62266 -0.038369 -2.2592E-05 -0.45071 -0.00026539 -0.48908 -0.00028798 588.818335972611 36.205 0.7683 39.874 39.549 40.317 3.6692 93 55 2 0 0 0 0.46869 1 6689 6689 3.9444 1.4459 1 135260 + 13400 32787 8532 8538 16518 16518 0.0418746930861289 IELIKTDMHM 10 Unmodified _IELIKTDMHM_ 0 0 0 REV__L1MB8_dup8397|chr9:122963256-122964706:+|1.4238882972064797|0.025541830079335|5.8|151.0|17|1|sense REV__L1MB8_dup8397|chr9:122963256-122964706:+|1.4238882972064797|0.025541830079335|5.8|151.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 615.8155517578125 2 615.814684 1229.61482 NaN NaN NaN NaN NaN NaN NaN 60.143 1 63.66 63.16 64.16 3.5169 0 0 0 0.53105 1 13188 13188 3.2813 0 1 + 13401 26439 8533 8539 16519 16519 0.009192507251782445 IELINLATYK 10 Unmodified _IELINLATYK_ 0 0 0 L1M4_dup13998|chr11:72917908-72918644:-|2.350615233679157|0.0147984532878558|7.31|151.0|3|1|sense L1M4_dup13998|chr11:72917908-72918644:-|2.350615233679157|0.0147984532878558|7.31|151.0|3|1|sense L1M4_dup13998|chr11:72917908-72918644:-|2.350615233679157|0.0147984532878558|7.31|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 589.3428955078125 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 96.943 1 100.72 100.22 101.22 3.7767 0 0 0 0.53105 1 24030 24030 1.3295 0.80477 1 13402 8838 8534 8540 16520 16520 0.09415427371436635 IELLGHRK 8 Unmodified _IELLGHRK_ 0 0 0 L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|52|2|anti-sense L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|52|2|anti-sense L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_2 6 483.3085021972656 2 483.298176 964.581799 NaN NaN NaN NaN NaN NaN NaN 50.846 1 54.514 54.014 55.014 3.6679 0 0 0 0.4044 1 10421 10421 4.756 0 1 13403 12598 8535 8541 16521 16521 0.09809172779660003 IELQAFLKM 9 Unmodified _IELQAFLKM_ 0 0 0 REV__ENST00000554535.2_1_14:35899543-35899834:+|nuORF REV__ENST00000554535.2_1_14:35899543-35899834:+|nuORF MSMS UPN48_class_I_Rep_3 7 546.809814453125 2 546.809728 1091.6049 NaN NaN NaN NaN NaN NaN NaN 34.384 1 38.064 37.564 38.564 3.6797 0 0 0 0.38639 1 5456 5456 3.9444 0.3479 1 + 13404 22983 8536 8542 16522 16522 0.06276430782099851 IENINKTK 8 Unmodified _IENINKTK_ 0 0 0 L1MC2_dup2004|chr5:131690712-131691825:+|2.9852855276342907|0.0567101321457806|5.72|151.0|9|1|sense L1MC2_dup2004|chr5:131690712-131691825:+|2.9852855276342907|0.0567101321457806|5.72|151.0|9|1|sense L1MC2_dup2004|chr5:131690712-131691825:+|2.9852855276342907|0.0567101321457806|5.72|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 480.7511291503906 2 480.279649 958.544745 NaN NaN NaN NaN NaN NaN NaN 20.041 1 23.437 22.937 23.937 3.3963 0 0 0 0.40625 1 2006 2006 2.3027 0 1 13405 11230 8537 8543 16523 16523 0.063814564432505 IENPFGETF 9 Unmodified _IENPFGETF_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS UPN46_class_I_Rep_3 1 527.2476196289062 2 527.248015 1052.48148 0.30909 0.00016297 -0.35476 -0.00018705 -0.045672 -2.4081E-05 527.2477713091299 77.548 0.57146 77.548 77.368 77.94 0 93 59 2 0 0 0 0.0074183 5 18128 18091;18128;18162;18193;18208 110.55 58.284 1 255740 13406 4663 8538 8544 16524;16525;16526;16527;16528 16525 -0.042665290646709764 IEPQVHSR 8 Unmodified _IEPQVHSR_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST MSMS UPN46_class_I_Rep_3 1 483.26141357421875 2 483.261791 964.509028 NaN NaN NaN NaN NaN NaN NaN 45.079 1 45.079 44.579 45.579 0 0 0 0 0.40501 1 9133 9133 3.9444 0 1 13407 16712 8539 8545 16529 16529 0.025354189862468957 IEQAGRPVQ 9 Unmodified _IEQAGRPVQ_ 0 0 0 REV__ENSG00000100218|ENST00000216036|RSPH14 REV__ENSG00000100218|ENST00000216036|RSPH14 MSMS UPN47_class_I_Rep_1 2 499.2743835449219 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 50.281 1 53.91 53.41 54.41 3.6285 0 0 0 0.39518 1 11012 11012 1.8442 0 1 + 13408 18096 8540 8546 16530 16530 0.03683688157718734 IEQEIRILL 9 Unmodified _IEQEIRILL_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS UPN48_class_I_Rep_1 5 563.8452758789062 2 563.845156 1125.67576 0.52529 0.00029618 -0.30899 -0.00017422 0.2163 0.00012196 563.8450150590853 65.999 0.52673 69.45 69.09 69.617 3.4516 58 33 2 0 0 0 0.19092 3 15097 15008;15050;15097 21.59 3.2171 1 246860 13409 2985 8541 8547 16531;16532;16533 16533 0.11794847091277916 IEQEIRILL 9 Unmodified _IEQEIRILL_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS UPN48_class_I_Rep_2 6 564.346923828125 2 563.845156 1125.67576 0.51725 0.00029165 -0.029533 -1.6652E-05 0.48772 0.000275 563.8450201477484 65.687 0.58554 69.169 68.949 69.535 3.4812 78 41 2 0 0 0 0.05757 3 14994 14954;14994;15038 45.74 3.7843 1 162460 13410 2985 8541 8547 16534;16535;16536 16535 0.11794847091277916 IEQEIRILL 9 Unmodified _IEQEIRILL_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS UPN48_class_I_Rep_3 7 563.8453979492188 2 563.845156 1125.67576 0.4722 0.00026625 -0.20077 -0.00011321 0.27142 0.00015304 563.8449843090788 65.768 0.59534 69.275 68.857 69.452 3.5077 81 38 3 0 0 0 0.10956 3 14829 14790;14829;14875 32.037 3.543 1 204290 13411 2985 8541 8547 16537;16538;16539 16538 0.11794847091277916 IEQKSDKTNSF 11 Unmodified _IEQKSDKTNSF_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS UPN46_class_I_Rep_3 1 432.8848571777344 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 44.088 1 44.088 43.588 44.588 0 0 0 0 0.38417 1 8857 8857 2.4348 1.6583 1 + 13412 19961 8542 8548 16540 16540 -0.0002474436994361895 IEQTLLLL 8 Unmodified _IEQTLLLL_ 0 0 0 L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense MSMS UPN48_class_I_Rep_1 5 471.79583740234375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 48.095 1 51.617 51.117 52.117 3.5219 0 0 0 0.40364 1 9576 9576 5.7604 0 1 13413 12286 8543 8549 16541 16541 0.10660699251207006 IERAVDDG 8 Unmodified _IERAVDDG_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000413611.2_1_1:146675128-146675437:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS UPN47_class_I_Rep_1 2 437.71502685546875 2 437.716882 873.41921 NaN NaN NaN NaN NaN NaN NaN 96.608 1 100.38 99.884 100.88 3.7767 0 0 0 0.4044 1 23948 23948 4.756 0 1 13414 3728 8544 8550 16542 16542 -0.02256255412999053 IERDRRAQA 9 Unmodified _IERDRRAQA_ 0 0 0 nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1 nc|ENSG00000135476|Q14674-2|ESPL1 nc|ENSG00000135476|Q14674-2|ESPL1 MULTI-MSMS UPN46_class_I_Rep_3 1 557.8080444335938 2 557.807428 1113.6003 0.37468 0.000209 1.6899 0.00094265 2.0646 0.0011517 557.808216275627 49.866 0.038803 49.866 49.85 49.889 0 5 3 2 0 0 0 0.43982 1 10503 10503 5.7319 0 1 138490 13415 2913 8545 8551 16543 16543 0.04804682683561623 IERGRGTLR 9 Unmodified _IERGRGTLR_ 0 0 0 nc|ENSG00000164188|Q86VV4-3|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L nc|ENSG00000164188|Q86VV4-3|RANBP3L nc|ENSG00000164188|Q86VV4-3|RANBP3L MULTI-SECPEP UPN48_class_I_Rep_2 6 528.8142700195312 2 529.314889 1056.61522 0.40808 0.000216 -0.23888 -0.00012644 0.1692 8.9561E-05 529.3146079530295 73.56 0.16677 77.138 77.083 77.25 3.5779 24 16 2 0 0 0 0.12383 1 17299 17299 3.2813 0.97858 1 145500 13416 4094 8546 8552 16544 16544 0.08918174551558877 IERKPEQR 8 Unmodified _IERKPEQR_ 0 0 0 L1MCa_dup7361|chr21:34805053-34807193:+|15.537272966777865|0.2566459065864466|5.92|151.0|68|3|sense L1MCa_dup7361|chr21:34805053-34807193:+|15.537272966777865|0.2566459065864466|5.92|151.0|68|3|sense L1MCa_dup7361|chr21:34805053-34807193:+|15.537272966777865|0.2566459065864466|5.92|151.0|68|3|sense MSMS UPN46_class_I_Rep_3 1 528.3015747070312 2 528.301447 1054.58834 NaN NaN NaN NaN NaN NaN NaN 99.61 1 99.61 99.11 100.11 0 0 0 0 0.40604 1 24272 24272 2.5775 0 1 13417 11843 8547 8553 16545 16545 0.06323065940387096 IERLKQLID 9 Unmodified _IERLKQLID_ 0 0 0 ENSG00000096696|ENST00000379802|DSP ENSG00000096696|ENST00000379802|DSP ENSG00000096696|ENST00000379802|DSP MULTI-MSMS UPN47_class_I_Rep_1 2 564.3411865234375 2 564.342781 1126.67101 0.016341 9.2219E-06 -0.31647 -0.0001786 -0.30013 -0.00016937 564.3425666493797 42.13 0.78924 45.809 45.466 46.255 3.6792 98 52 2 0 0 0 0.44742 1 8646 8646 5.2969 0 1 167610 13418 1427 8548 8554 16546 16546 0.11273962948507688 IERLKQLID 9 Unmodified _IERLKQLID_ 0 0 0 ENSG00000096696|ENST00000379802|DSP ENSG00000096696|ENST00000379802|DSP ENSG00000096696|ENST00000379802|DSP MULTI-MSMS UPN47_class_I_Rep_2 3 564.3428955078125 2 564.342781 1126.67101 0.097112 5.4805E-05 -0.13772 -7.7723E-05 -0.040611 -2.2919E-05 564.3427203469919 42.675 0.71814 46.036 45.596 46.314 3.3611 94 49 2 0 0 0 0.47493 1 8795 8795 3.2813 0 1 128830 13419 1427 8548 8554 16547 16547 0.11273962948507688 IERMNHPQ 8 Unmodified _IERMNHPQ_ 0 0 0 REV__L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|11|1|sense REV__L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 512.7294311523438 2 512.753276 1023.492 NaN NaN NaN NaN NaN NaN NaN 26.611 1 29.959 29.459 30.459 3.3478 0 0 0 0.40625 1 3919 3919 2.3027 0 1 + 13420 24523 8549 8555 16548 16548 -0.01880824891213706 IERRDRYI 8 Unmodified _IERRDRYI_ 0 0 0 REV__L1MB4_dup671|chr2:37153516-37154013:-|1.0324357882733652|0.0336665829579755|4.94|151.0|15|2|sense REV__L1MB4_dup671|chr2:37153516-37154013:-|1.0324357882733652|0.0336665829579755|4.94|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 560.8164672851562 2 560.814722 1119.61489 NaN NaN NaN NaN NaN NaN NaN 65.224 1 68.579 68.079 69.079 3.3557 0 0 0 0.37214 1 15543 15543 16.942 3.3274 1 + 13421 26008 8550 8556 16549 16549 0.05986754831701546 IERRKQQY 8 Unmodified _IERRKQQY_ 0 0 0 nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1 nc|ENSG00000114841|Q9P2D7-3|DNAH1 nc|ENSG00000114841|Q9P2D7-3|DNAH1 MULTI-MSMS UPN47_class_I_Rep_3 4 561.3114013671875 2 560.814722 1119.61489 0.43393 0.00024335 0.33795 0.00018953 0.77188 0.00043288 560.8159680830288 65.597 0.39836 68.776 68.633 69.031 3.1795 33 25 2 0 0 0 0.82752 1 15748 15748 5.2307 0 1 51366 13422 2093 8551 8557 16550 16550 0.05986754831701546 IERRWRREQEL 11 Unmodified _IERRWRREQEL_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MULTI-MSMS UPN47_class_I_Rep_1 2 524.6254272460938 3 524.290212 1569.84881 0.22096 0.00011585 1.2253 0.00064241 1.4463 0.00075826 524.6251935612858 52.115 0.3133 55.674 55.423 55.736 3.5585 36 24 2 0 0 0 0.6724 1 11583 11583 1.2148 0.70888 1 171950 13423 5663 8552 8558 16551 16551 0.08667606200447153 IERRWRREQEL 11 Unmodified _IERRWRREQEL_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MULTI-SECPEP UPN47_class_I_Rep_2 3 523.7616577148438 3 524.290212 1569.84881 0.13251 6.9473E-05 1.8042 0.0009459 1.9367 0.0010154 524.291092175425 52.472 0.35738 55.805 55.52 55.877 3.3332 48 36 2 0 0 0 22.551 1 11720 11720 2.4348 1.325 1 238780 13424 5663 8552 8558 16552 16552 0.08667606200447153 IERRWVHP 8 Unmodified _IERRWVHP_ 0 0 0 REV__LTR13_dup116|chr5:179990016-179991019:-|7.05708169237373|0.1245995881828589|5.82|151.0|45|2|anti-sense REV__LTR13_dup116|chr5:179990016-179991019:-|7.05708169237373|0.1245995881828589|5.82|151.0|45|2|anti-sense MSMS UPN46_class_I_Rep_3 1 547.04541015625 2 546.8067 1091.59885 NaN NaN NaN NaN NaN NaN NaN 119.25 1 119.25 118.75 119.75 0 0 0 0 0.40738 1 29631 29631 0.79363 0.10326 1 + 13425 30828 8553 8559 16553 16553 0.05671093385490167 IESHFDHYF 9 Unmodified _IESHFDHYF_ 0 0 0 REV__nc|ENSG00000007202|Q14667-2|BLTP2 REV__nc|ENSG00000007202|Q14667-2|BLTP2 MSMS UPN47_class_I_Rep_1 2 597.7620849609375 2 597.764363 1193.51417 NaN NaN NaN NaN NaN NaN NaN 66.612 1 69.97 69.47 70.47 3.3576 0 0 0 0.35339 1 15967 15967 7.9102 4.6288 1 + 13426 17545 8554 8560 16554 16554 -0.07484321941819871 IESKYFNMLN 10 Unmodified _IESKYFNMLN_ 0 0 0 REV__ENSG00000088538|ENST00000266037|DOCK3 REV__ENSG00000088538|ENST00000266037|DOCK3 MSMS UPN47_class_I_Rep_2 3 629.8124389648438 2 629.810456 1257.60636 NaN NaN NaN NaN NaN NaN NaN 52.34 1 55.673 55.173 56.173 3.3332 0 0 0 0.53105 1 11669 11669 3.5965 0.31518 1 + 13427 17990 8555 8561 16555 16555 -0.012139799197711909 IESRILDLR 9 Unmodified _IESRILDLR_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557417.5_3_12:56748997-56753873:-|nuORF;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS UPN48_class_I_Rep_2 6 558.3342895507812 2 557.83258 1113.65061 0.51613 0.00028792 -0.29516 -0.00016465 0.22097 0.00012326 557.8324833968329 51.87 0.26585 55.509 55.37 55.636 3.639 42 28 2 0 0 0 0.39745 1 10700 10700 8.1555 0.54658 1 279610 13428 4478 8556 8562 16556 16556 0.09832792288693781 IESSNQALYP 10 Unmodified _IESSNQALYP_ 0 0 0 ENST00000474686.5_1_7:76940677-76943837:-|nuORF;nc|ENSG00000186088|A4D1B5-4|GSAP;ENSG00000186088|ENST00000257626|GSAP ENST00000474686.5_1_7:76940677-76943837:-|nuORF ENST00000474686.5_1_7:76940677-76943837:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 561.2783203125 2 561.277303 1120.54005 0.17266 9.6909E-05 -0.17847 -0.00010017 -0.0058081 -3.26E-06 561.2770810547216 44.306 0.5509 47.661 47.377 47.927 3.3556 48 35 2 0 0 0 0.56309 1 9174 9174 1.6526 0 1 110100 13429 5138 8557 8563 16557 16557 -0.015394724901852896 IESVIIVFSN 10 Unmodified _IESVIIVFSN_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|201|3|anti-sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|201|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.8161010742188 2 560.816064 1119.61758 0.37522 0.00021043 -0.30876 -0.00017316 0.066461 3.7272E-05 560.8157567758218 65.383 0.42514 68.639 68.315 68.74 3.2556 40 31 2 0 0 0 0.46742 1 15641 15641 14.405 2.9107 1 143510 + 13430 26498 8558 8564 16558 16558 0.06255165446009414 IETELIYKY 9 Unmodified _IETELIYKY_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MULTI-MSMS UPN46_class_I_Rep_3 1 586.315185546875 2 586.315897 1170.61724 0.45429 0.00026636 -1.5112 -0.00088604 -1.0569 -0.00061968 586.3144637357528 59.525 0.11068 59.525 59.441 59.551 0 18 11 2 0 0 0 0.26468 1 13150 13150 16.149 3.1066 1 141020 13431 2803 8559 8565 16559 16559 0.038757457261453965 IETELIYKY 9 Unmodified _IETELIYKY_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MULTI-MSMS UPN46_class_I_Rep_3 1 586.39013671875 2 586.315897 1170.61724 0.45447 0.00026646 -0.28264 -0.00016572 0.17182 0.00010074 586.3157858879266 59.614 0.16085 59.614 59.535 59.696 0 26 18 2 0 0 0 0.052902 3 13199 13189;13191;13199 47.749 17.112 1 391810 13432 2803 8559 8565 16560;16561;16562 16562 0.038757457261453965 IETGLTLVAA 10 Unmodified _IETGLTLVAA_ 0 0 0 L1MB2_dup1194|chr2:207594217-207594991:-|1.7422856918907546|0.1094244795097773|3.99|151.0|23|3|sense L1MB2_dup1194|chr2:207594217-207594991:-|1.7422856918907546|0.1094244795097773|3.99|151.0|23|3|sense L1MB2_dup1194|chr2:207594217-207594991:-|1.7422856918907546|0.1094244795097773|3.99|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 494.2896423339844 2 494.289682 986.564812 NaN NaN NaN NaN NaN NaN NaN 79.276 1 82.571 82.071 83.071 3.295 0 0 0 0.53105 1 19806 19806 9.3831 0 1 13433 10201 8560 8566 16563 16563 0.07099207383180328 IETGSLLEL 9 Unmodified _IETGSLLEL_ 0 0 0 L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|290|2|anti-sense L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|290|2|anti-sense L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|290|2|anti-sense MSMS UPN48_class_I_Rep_1 5 487.7732238769531 2 487.773865 973.533177 NaN NaN NaN NaN NaN NaN NaN 79.608 1 83.157 82.657 83.657 3.5487 0 0 0 0.37476 1 19011 19011 6.7232 0.96273 1 13434 14865 8561 8567 16564 16564 0.04535214629231632 IETIINTF 8 Unmodified _IETIINTF_ 0 0 0 ENSG00000163220|ENST00000368738|S100A9 ENSG00000163220|ENST00000368738|S100A9 ENSG00000163220|ENST00000368738|S100A9 MULTI-MSMS UPN46_class_I_Rep_3 1 475.76324462890625 2 475.7633 949.512048 0.2242 0.00010667 -0.069704 -3.3163E-05 0.1545 7.3503E-05 475.7631637893253 75.39 0.62659 75.39 75.091 75.717 0 115 60 3 0 0 0 3.1862E-08 5 17508 17470;17486;17508;17545;17579 174.73 74.356 1 965510 13435 3992 8562 8568 16565;16566;16567;16568;16569 16567 0.035272493203933664 IETKQIRS 8 Unmodified _IETKQIRS_ 0 0 0 REV__MLT1D_dup2860|chr2:224528089-224528530:-|1.435193729299369|0.0452815894580039|4.99|151.0|19|1|anti-sense REV__MLT1D_dup2860|chr2:224528089-224528530:-|1.435193729299369|0.0452815894580039|4.99|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.98028564453125 2 487.785099 973.555644 NaN NaN NaN NaN NaN NaN NaN 53.096 1 56.679 56.179 57.179 3.5836 0 0 0 0.40501 1 11031 11031 3.9444 0 1 + 13436 31679 8563 8569 16570 16570 0.0678085881751258 IETLFYCDH 9 Unmodified _IETLFYCDH_ 0 0 0 REV__MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|258|2|anti-sense REV__MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|258|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 571.2568359375 2 570.755149 1139.49575 0.40521 0.00023127 -3.3971 -0.0019389 -2.9919 -0.0017076 571.2559857092314 69.779 0.52682 73.056 72.799 73.326 3.2761 90 44 3 0 0 0 0.25207 1 16979 16979 16.942 0 1 114580 + 13437 31375 8564 8570 16571 16571 -0.06842199908010116 IETLGKGRCD 10 Unmodified _IETLGKGRCD_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS UPN47_class_I_Rep_3 4 546.2805786132812 2 546.279323 1090.54409 NaN NaN NaN NaN NaN NaN NaN 34.851 1 38.115 37.615 38.615 3.2639 0 0 0 0.53105 1 6384 6384 1.4819 0.28856 1 + 13438 19503 8565 8571 16572 16572 0.00244293731907419 IETLIVHY 8 Unmodified _IETLIVHY_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 494.2796325683594 2 494.279118 986.543683 0.22536 0.00011139 0.16038 7.9271E-05 0.38574 0.00019066 494.27913042065444 59.264 0.31313 59.264 58.992 59.305 0 62 34 2 0 0 0 0.82752 2 13036 13036;13081 90.836 32.848 1 349790 13439 4890 8566 8572 16573;16574 16573 0.049872420743326984 IETPKQTTL 9 Unmodified _IETPKQTTL_ 0 0 0 HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|25|3|sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|25|3|sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.2955322265625 2 515.792589 1029.57063 -0.10457 -5.3938E-05 0.52625 0.00027143 0.42167 0.0002175 515.7925153996661 46.051 0.52911 49.405 49.122 49.651 3.3534 50 35 2 0 0 0 0.39745 1 9722 9722 8.1555 2.4237 1 51091 13440 8303 8567 8573 16575 16575 0.057023058948516336 IETPKQTTL 9 Unmodified _IETPKQTTL_ 0 0 0 HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|25|3|sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|25|3|sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|25|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 516.2955322265625 2 515.792589 1029.57063 -0.10457 -5.3938E-05 0.52625 0.00027143 0.42167 0.0002175 515.7925153996661 46.051 0.52911 49.405 49.122 49.651 3.3534 50 35 2 0 0 0 0.12026 1 9722 9722 8.1555 2.4237 1 51091 13441 8303 8567 8573 16576 16576 0.057023058948516336 IETWHHGDY 9 Unmodified _IETWHHGDY_ 0 0 0 REV__ENST00000504717.1_1_22:50942898-50943677:-|nuORF REV__ENST00000504717.1_1_22:50942898-50943677:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 579.7568969726562 2 579.254163 1156.49377 0.44598 0.00025833 -1.2856 -0.0007447 -0.83964 -0.00048636 579.7549527910224 69.569 0.52584 72.773 72.536 73.062 3.2044 56 40 2 0 0 0 0.32219 1 17017 17017 12.532 1.7076 1 88502 + 13442 18100 8568 8574 16577 16577 -0.07821492601624414 IEVDGKQVEL 10 Unmodified _IEVDGKQVEL_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MSMS UPN48_class_I_Rep_2 6 565.3090209960938 2 565.308603 1128.60265 0.58026 0.00032803 -2.1788 -0.0012317 -1.5986 -0.00090369 565.3078525479522 54.199 0.37186 57.781 57.505 57.877 3.5817 30 22 2 0 0 0 0.36548 1 11418 11418 22.658 1.1211 1 134020 13443 1036 8569 8575 16578 16578 0.04349673578008151 IEVDGKQVEL 10 Unmodified _IEVDGKQVEL_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MATCH UPN48_class_I_Rep_3 7 2 565.308603 1128.60265 0.29048 0.00016421 0.18754 0.00010602 0.47802 0.00027023 565.3086698434535 54.043 0.11152 57.612 57.532 57.643 3.5694 -0.084371 0.00036254 NaN 22.658 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 61494 13444 1036 8569 8575 0.04349673578008151 IEVDSNSQEL 10 Unmodified _IEVDSNSQEL_ 0 0 0 REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.267578125 2 567.269675 1132.5248 NaN NaN NaN NaN NaN NaN NaN 48.85 1 52.509 52.009 53.009 3.6592 0 0 0 0.53105 1 10576 10576 4.897 0.95262 1 + 13445 20258 8570 8576 16579 16579 -0.036163840780318424 IEVGSILPA 9 Unmodified _IEVGSILPA_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 449.76556396484375 2 449.765843 897.517133 0.13556 6.0971E-05 -0.61201 -0.00027526 -0.47644 -0.00021429 449.7655262370058 69.463 0.21958 69.463 69.392 69.612 0 35 21 2 0 0 0 0.45688 1 15962 15962 4.756 0.42677 1 152220 + 13446 17671 8571 8577 16580 16580 0.06427553182993506 IEVKGRVYR 9 Unmodified _IEVKGRVYR_ 0 0 0 Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|10|2|sense Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|10|2|sense Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3178100585938 2 560.33529 1118.65603 0.33291 0.00018654 0.028631 1.6043E-05 0.36154 0.00020258 560.335368008282 41.135 0.43944 44.781 44.53 44.97 3.6458 59 44 2 0 0 0 0.48846 1 7368 7368 1.8442 0.36234 1 70610 13447 33138 8572 8578 16581 16581 0.10144515871184012 IEVPDLGRP 9 Unmodified _IEVPDLGRP_ 0 0 0 REV__nc|ENSG00000127616|P51532-5|SMARCA4 REV__nc|ENSG00000127616|P51532-5|SMARCA4 MSMS UPN48_class_I_Rep_1 5 498.2810974121094 2 498.279649 994.544745 NaN NaN NaN NaN NaN NaN NaN 42.82 1 46.33 45.83 46.83 3.5099 0 0 0 0.38784 1 7965 7965 3.5965 1.019 1 + 13448 18882 8573 8579 16582 16582 0.04725456443236453 IEVRYNYIPGH 11 Unmodified _IEVRYNYIPGH_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MULTI-MSMS UPN48_class_I_Rep_1 5 454.2384033203125 3 454.238455 1359.69353 0.01666 7.5674E-06 -0.16776 -7.6205E-05 -0.1511 -6.8637E-05 454.2383031352833 46.802 0.91522 50.321 49.93 50.845 3.5192 140 57 3 0 0 0 0.62008 1 9205 9205 4.7159 0.30977 1 338070 + 13449 18184 8574 8580 16583 16583 0.02807562346129089 IEVRYNYIPGH 11 Unmodified _IEVRYNYIPGH_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MULTI-MSMS UPN48_class_I_Rep_2 6 454.23834228515625 3 454.238455 1359.69353 0.069693 3.1657E-05 -0.3681 -0.0001672 -0.29841 -0.00013555 454.23822163384295 46.491 0.83336 50.24 49.897 50.73 3.7494 127 52 4 0 0 0 0.62008 2 9096 9056;9096 4.7159 1.6437 1 275740 + 13450 18184 8574 8580 16584;16585 16585 0.02807562346129089 IEVSVPRF 8 Unmodified _IEVSVPRF_ 0 0 0 ENST00000487406.2_1_9:133495824-133506568:+|nuORF;nc|ENSG00000107164|Q96I24-2|FUBP3;ENSG00000107164|ENST00000319725|FUBP3 ENST00000487406.2_1_9:133495824-133506568:+|nuORF ENST00000487406.2_1_9:133495824-133506568:+|nuORF MSMS UPN46_class_I_Rep_3 1 473.77117919921875 2 473.77146 945.528367 NaN NaN NaN NaN NaN NaN NaN 64.22 1 64.22 63.72 64.72 0 0 0 0 0.36226 1 14444 14444 19.257 0 1 13451 1813 8575 8581 16586 16586 0.053423752771550426 IEYQFVERL 9 Unmodified _IEYQFVERL_ 0 0 0 ENST00000494355.1_1_1:211526581-211526800:+|nuORF;ENST00000462410.5_1_1:211526581-211529879:+|nuORF;nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5 ENST00000494355.1_1_1:211526581-211526800:+|nuORF ENST00000494355.1_1_1:211526581-211526800:+|nuORF MSMS UPN46_class_I_Rep_3 1 599.0469970703125 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 66.411 1 66.411 65.911 66.911 0 0 0 0 0.068805 1 15067 15067 31.636 7.6152 1 13452 1228 8576 8582 16587 16587 0.033736836775233314 IEYSAYVHF 9 Unmodified _IEYSAYVHF_ 0 0 0 L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|97|2|anti-sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|97|2|anti-sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|97|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.7727661132812 2 564.771657 1127.52876 NaN NaN NaN NaN NaN NaN NaN 24.674 1 28.31 27.81 28.81 3.6363 0 0 0 0.39428 1 2896 2896 2.0598 0.21551 1 13453 11299 8577 8583 16588 16588 -0.02990249793674593 IEYSYNRI 8 Unmodified _IEYSYNRI_ 0 0 0 L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|7|1|sense L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|7|1|sense L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.2689208984375 2 529.269281 1056.52401 0.35509 0.00018794 -0.030355 -1.6066E-05 0.32473 0.00017187 529.269163671314 61.403 1.2208 64.785 64.526 65.747 3.3815 212 89 4 0 0 0 0.82752 1 14582 14582 16.942 0 1 1144700 13454 12794 8578 8584 16589 16589 -0.0019913393641672883 IFAAFAVM 8 Unmodified _IFAAFAVM_ 0 0 0 ENSG00000110719|ENST00000265686|TCIRG1;nc|ENSG00000110719|Q13488-2|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF ENSG00000110719|ENST00000265686|TCIRG1 ENSG00000110719|ENST00000265686|TCIRG1 MSMS UPN46_class_I_Rep_3 1 435.234130859375 2 435.233125 868.451696 NaN NaN NaN NaN NaN NaN NaN 32.315 1 32.315 31.815 32.815 0 0 0 0 0.40738 1 5512 5512 0.79363 0 1 13455 1950 8579 8585 16590 16590 0.012208604563056724 IFAATILVIC 10 Unmodified _IFAATILVIC_ 0 0 0 REV__L1M5_dup30248|chr9:131413971-131414446:+|1.429358149849531|0.0209892969612782|6.09|151.0|38|3|anti-sense REV__L1M5_dup30248|chr9:131413971-131414446:+|1.429358149849531|0.0209892969612782|6.09|151.0|38|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 532.3163452148438 2 532.314646 1062.61474 0.33765 0.00017974 2.0957 0.0011156 2.4334 0.0012953 532.3157623924019 108.01 0.65218 108.01 107.91 108.57 0 82 62 2 0 0 0 0.46161 2 26357 26357;26444 14.838 2.3067 1 40472000 + 13456 24651 8580 8586 16591;16592 16591 0.08593618787494961 IFADINHL 8 Unmodified _IFADINHL_ 0 0 0 chr2:200780814-200782325|88|15.52|0.23|6.06|+|0|TE_info:L4_C_Mam,L4_C_Mam_dup677,RTE-X,LINE,acceptor,+,200782325,200782943|AOX2P,None|12 chr2:200780814-200782325|88|15.52|0.23|6.06|+|0|TE_info:L4_C_Mam,L4_C_Mam_dup677,RTE-X,LINE,acceptor,+,200782325,200782943|AOX2P,None|12 chr2:200780814-200782325|88|15.52|0.23|6.06|+|0|TE_info:L4_C_Mam,L4_C_Mam_dup677,RTE-X,LINE,acceptor,+,200782325,200782943|AOX2P,None|12 MULTI-MSMS UPN48_class_I_Rep_2 6 471.7558898925781 2 471.75581 941.497067 0.13927 6.5704E-05 -0.1628 -7.6801E-05 -0.023524 -1.1097E-05 471.75566100230026 43.223 1.0813 46.984 46.614 47.695 3.7617 182 83 3 0 0 0 0.82752 2 8019 8019;8178 24.674 0 1 873250 13457 599 8581 8587 16593;16594 16593 0.023978022430242163 IFADINHL 8 Unmodified _IFADINHL_ 0 0 0 chr2:200780814-200782325|88|15.52|0.23|6.06|+|0|TE_info:L4_C_Mam,L4_C_Mam_dup677,RTE-X,LINE,acceptor,+,200782325,200782943|AOX2P,None|12 chr2:200780814-200782325|88|15.52|0.23|6.06|+|0|TE_info:L4_C_Mam,L4_C_Mam_dup677,RTE-X,LINE,acceptor,+,200782325,200782943|AOX2P,None|12 chr2:200780814-200782325|88|15.52|0.23|6.06|+|0|TE_info:L4_C_Mam,L4_C_Mam_dup677,RTE-X,LINE,acceptor,+,200782325,200782943|AOX2P,None|12 MULTI-MSMS UPN48_class_I_Rep_3 7 471.7557678222656 2 471.75581 941.497067 0.12317 5.8106E-05 -0.21797 -0.00010283 -0.094803 -4.4724E-05 471.75564550411383 43.407 1.089 47.045 46.654 47.743 3.6385 195 80 3 0 0 0 0.82752 1 8145 8145 18.135 0 1 1069100 13458 599 8581 8587 16595 16595 0.023978022430242163 IFALHFSVI 9 Unmodified _IFALHFSVI_ 0 0 0 ENST00000428443.7_1_2:179979849-179979936:-|nuORF ENST00000428443.7_1_2:179979849-179979936:-|nuORF ENST00000428443.7_1_2:179979849-179979936:-|nuORF MSMS UPN48_class_I_Rep_2 6 523.8026733398438 2 523.805303 1045.59605 NaN NaN NaN NaN NaN NaN NaN 63.219 1 66.693 66.193 67.193 3.4738 0 0 0 0.081393 1 14196 14196 28.487 0.85804 1 13459 6713 8582 8588 16596 16596 0.07507825207949281 IFAVLQPPWVI 11 Unmodified _IFAVLQPPWVI_ 0 0 0 L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|9|1|sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|9|1|sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 641.8826904296875 2 641.881542 1281.74853 NaN NaN NaN NaN NaN NaN NaN 88.85 1 92.472 91.972 92.972 3.6229 0 0 0 0.38417 1 21319 21319 1.4819 0.15237 1 13460 14771 8583 8589 16597 16597 0.11892600884698368 IFAYHVFDK 9 Unmodified _IFAYHVFDK_ 0 0 0 L1MB7_dup22481|chr22:21838516-21839084:+|1.2783448611050017|0.0123075553305681|6.7|151.0|18|2|sense L1MB7_dup22481|chr22:21838516-21839084:+|1.2783448611050017|0.0123075553305681|6.7|151.0|18|2|sense L1MB7_dup22481|chr22:21838516-21839084:+|1.2783448611050017|0.0123075553305681|6.7|151.0|18|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 569.8038330078125 2 570.297842 1138.58113 0.51856 0.00029574 -3.749 -0.002138 -3.2304 -0.0018423 570.2951767812734 56.594 0.356 59.895 59.719 60.075 3.3009 25 20 2 0 0 0 0.11775 1 12972 12972 9.3474 0 1 55412 13461 10805 8584 8590 16598 16598 0.01738333339926612 IFCLADQW 8 Unmodified _IFCLADQW_ 0 0 0 REV__ENSG00000135451|ENST00000257909|TROAP REV__ENSG00000135451|ENST00000257909|TROAP MSMS UPN47_class_I_Rep_1 2 498.2345886230469 2 498.236396 994.458238 NaN NaN NaN NaN NaN NaN NaN 74.009 1 77.395 76.895 77.895 3.3861 0 0 0 0.40604 1 18197 18197 2.5775 0.27475 1 + 13462 19138 8585 8591 16599 16599 -0.03921246382992649 IFCLFYWYQ 9 Unmodified _IFCLFYWYQ_ 0 0 0 REV__L1MB5_dup7109|chr14:102608075-102608422:-|1.0336098090949029|0.0022977692691074|8.81|150.0|23|1|anti-sense REV__L1MB5_dup7109|chr14:102608075-102608422:-|1.0336098090949029|0.0022977692691074|8.81|150.0|23|1|anti-sense MSMS UPN48_class_I_Rep_1 5 641.8031005859375 2 641.801903 1281.58925 NaN NaN NaN NaN NaN NaN NaN 42.868 1 46.378 45.878 46.878 3.5103 0 0 0 0.40038 1 7980 7980 0.6015 0 1 + 13463 26093 8586 8592 16600 16600 -0.040278557349438415 IFCNACSDNEL 11 Unmodified _IFCNACSDNEL_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000473398.1_1_10:70105527-70115190:-|nuORF ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MULTI-MSMS UPN47_class_I_Rep_1 2 614.7515258789062 2 614.752281 1227.49001 0.45295 0.00027845 -0.75464 -0.00046391 -0.30169 -0.00018546 614.7519475862375 59.829 0.68189 63.228 62.941 63.623 3.3982 73 43 3 0 0 0 0.62008 1 13917 13917 4.7159 0.18705 1 130820 13464 5502 8587 8593 16601 16601 -0.1146366648199546 IFCNACSDNEL 11 Unmodified _IFCNACSDNEL_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000473398.1_1_10:70105527-70115190:-|nuORF ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MULTI-MSMS UPN47_class_I_Rep_2 3 614.7518310546875 2 614.752281 1227.49001 0.49305 0.0003031 -0.62571 -0.00038466 -0.13266 -8.1554E-05 614.752026070084 60.107 0.56866 63.38 63.077 63.646 3.2731 46 33 2 0 0 0 0.65186 1 13979 13979 3.0723 0.077021 1 102450 13465 5502 8587 8593 16602 16602 -0.1146366648199546 IFCNACSDNEL 11 Unmodified _IFCNACSDNEL_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000473398.1_1_10:70105527-70115190:-|nuORF ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MULTI-MSMS UPN47_class_I_Rep_3 4 614.7529296875 2 614.752281 1227.49001 0.37164 0.00022847 -0.084451 -5.1917E-05 0.28719 0.00017655 614.7521802317029 60.148 0.70248 63.313 63.031 63.734 3.1651 48 42 2 0 0 0 0.65186 1 14157 14157 3.0723 0.077021 1 121030 13466 5502 8587 8593 16603 16603 -0.1146366648199546 IFCVHCMY 8 Unmodified _IFCVHCMY_ 0 0 0 REV__L1PA5_dup1330|chr2:159724691-159725652:-|1.8989238237645047|0.1540246509717151|3.62|151.0|36|1|anti-sense REV__L1PA5_dup1330|chr2:159724691-159725652:-|1.8989238237645047|0.1540246509717151|3.62|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_1 2 508.2117614746094 2 508.213552 1014.41255 NaN NaN NaN NaN NaN NaN NaN 45.557 1 49.256 48.756 49.756 3.6999 0 0 0 0.40581 1 9580 9580 2.8892 0.58649 1 + 13467 29715 8588 8594 16604 16604 -0.09407931161240413 IFDEWFKL 8 Unmodified _IFDEWFKL_ 0 0 0 REV__ERVL-E-int_dup2140|chr4:48117988-48118641:-|1.6947298308557943|0.0518245824626536|5.03|151.0|33|2|anti-sense REV__ERVL-E-int_dup2140|chr4:48117988-48118641:-|1.6947298308557943|0.0518245824626536|5.03|151.0|33|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2869262695312 2 549.286943 1096.55933 0.33937 0.00018641 -1.4716 -0.00080835 -1.1323 -0.00062193 549.286074545603 38.634 0.54546 42.293 42.039 42.585 3.6595 90 54 2 0 0 0 0.82752 1 6652 6652 11.64 2.8949 1 167920 + 13468 23272 8589 8595 16605 16605 0.014915285913730258 IFDREEYE 8 Unmodified _IFDREEYE_ 0 0 0 nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1 nc|ENSG00000183023|P32418-2|SLC8A1 nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN47_class_I_Rep_3 4 550.748779296875 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 22.862 1 26.213 25.713 26.713 3.3503 0 0 0 0.40604 1 2808 2808 2.5775 0.27475 1 13469 16771 8590 8596 16606 16606 -0.06355734415615188 IFDREEYE 8 Unmodified _IFDREEYE_ 0 0 0 nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1 nc|ENSG00000183023|P32418-2|SLC8A1 nc|ENSG00000183023|P32418-2|SLC8A1 MSMS UPN48_class_I_Rep_1 5 550.7487182617188 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 26.538 1 30.105 29.605 30.605 3.5667 0 0 0 0.40604 1 3275 3275 2.5775 0 1 13470 16771 8590 8596 16607 16607 -0.06355734415615188 IFEESPQCLPQ 11 Unmodified _IFEESPQCLPQ_ 0 0 0 L1PA11_dup2884|chr11:4035856-4036801:-|1.423092395785832|0.0129692123601941|6.78|150.0|59|3|anti-sense L1PA11_dup2884|chr11:4035856-4036801:-|1.423092395785832|0.0129692123601941|6.78|150.0|59|3|anti-sense L1PA11_dup2884|chr11:4035856-4036801:-|1.423092395785832|0.0129692123601941|6.78|150.0|59|3|anti-sense MSMS UPN48_class_I_Rep_2 6 645.8041381835938 2 645.805371 1289.59619 NaN NaN NaN NaN NaN NaN NaN 21.072 1 24.72 24.22 25.22 3.648 0 0 0 0.38417 1 1926 1926 1.1933 0.59184 1 13471 13665 8591 8597 16608 16608 -0.037025876450343276 IFEICSCGSEY 11 Unmodified _IFEICSCGSEY_ 0 0 0 REV__L1PA6_dup4244|chr10:98177041-98183177:-|1.9555566863878469|0.0337313392458835|5.86|150.0|353|3|anti-sense REV__L1PA6_dup4244|chr10:98177041-98183177:-|1.9555566863878469|0.0337313392458835|5.86|150.0|353|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 625.758056640625 2 625.757032 1249.49951 0.45937 0.00028746 -0.25496 -0.00015954 0.20442 0.00012791 625.7571070042922 59.173 0.54828 62.59 62.394 62.942 3.4171 82 40 3 0 0 0 0.28469 1 13716 13716 17.113 3.2068 1 153840 + 13472 29904 8592 8598 16609 16609 -0.11525898196464368 IFEICSCGSEY 11 Unmodified _IFEICSCGSEY_ 0 0 0 REV__L1PA6_dup4244|chr10:98177041-98183177:-|1.9555566863878469|0.0337313392458835|5.86|150.0|353|3|anti-sense REV__L1PA6_dup4244|chr10:98177041-98183177:-|1.9555566863878469|0.0337313392458835|5.86|150.0|353|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.2595825195312 2 625.757032 1249.49951 0.50846 0.00031817 -0.1705 -0.00010669 0.33796 0.00021148 625.7571738251728 59.373 0.65717 62.646 62.379 63.036 3.2731 86 47 3 0 0 0 0.4608 2 13767 13767;13863 8.7454 3.0136 1 156660 + 13473 29904 8592 8598 16610;16611 16610 -0.11525898196464368 IFEKHQLGD 9 Unmodified _IFEKHQLGD_ 0 0 0 REV__MER20_dup8325|chrX:2693814-2694016:+|1.7121580386798292|0.0088687140589472|7.59|151.0|4|2|sense REV__MER20_dup8325|chrX:2693814-2694016:+|1.7121580386798292|0.0088687140589472|7.59|151.0|4|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 543.7827758789062 2 543.782556 1085.55056 0.32446 0.00017643 0.18797 0.00010221 0.51242 0.00027865 543.7825629512275 49.644 0.87021 49.644 49.275 50.145 0 201 93 3 0 0 0 0.35081 1 10393 10393 10.824 0 1 1054900 + 13474 31161 8593 8599 16612 16612 0.01120554954900399 IFEKIKRKKIF 11 Unmodified _IFEKIKRKKIF_ 0 0 0 L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense;L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|19|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense MSMS UPN48_class_I_Rep_2 6 483.9811096191406 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 83.635 1 87.317 86.817 87.817 3.6814 0 0 0 0.38417 1 19881 19881 0.094841 0 1 13475 13114 8594 8600 16613 16613 0.21663601029854362 IFEKIKRKKIF 11 Unmodified _IFEKIKRKKIF_ 0 0 0 L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense;L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|19|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense MSMS UPN48_class_I_Rep_2 6 483.9810485839844 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 89.507 1 93.254 92.754 93.754 3.7471 0 0 0 0.38417 1 21329 21329 0.094841 0 1 13476 13114 8594 8600 16614 16614 0.21663601029854362 IFEKIKRKKIF 11 Unmodified _IFEKIKRKKIF_ 0 0 0 L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense;L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|19|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 483.9811096191406 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 90.181 1 94.028 93.528 94.528 3.847 0 0 0 0.38417 1 21410 21410 0.094841 0 1 13477 13114 8594 8600 16615 16615 0.21663601029854362 IFFDAKTW 8 Unmodified _IFFDAKTW_ 0 0 0 REV__ENST00000229328.9_1_12:120119136-120119388:+|nuORF REV__ENST00000229328.9_1_12:120119136-120119388:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.79638671875 2 514.26601 1026.51747 NaN NaN NaN NaN NaN NaN NaN 33.348 1 36.622 36.122 37.122 3.2748 0 0 0 0.40364 1 5933 5933 5.7604 0 1 + 13478 21492 8595 8601 16616 16616 0.005269729028441361 IFFEIESHS 9 Unmodified _IFFEIESHS_ 0 0 0 AluSz_dup62178|chr11:33276697-33277002:-|1.1316495491749194|0.0543951644377327|4.38|151.0|12|1|anti-sense AluSz_dup62178|chr11:33276697-33277002:-|1.1316495491749194|0.0543951644377327|4.38|151.0|12|1|anti-sense AluSz_dup62178|chr11:33276697-33277002:-|1.1316495491749194|0.0543951644377327|4.38|151.0|12|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 554.7689819335938 2 554.769114 1107.52368 0.3555 0.00019722 0.077448 4.2966E-05 0.43295 0.00024018 554.7689607214378 65.306 0.33849 65.306 65.069 65.408 0 49 37 2 0 0 0 0.17468 1 14780 14780 23.148 0 1 228640 13479 357 8596 8602 16617 16617 -0.02578553656303484 IFFFFWRH 8 Unmodified _IFFFFWRH_ 0 0 0 AluSz6_dup15325|chr6:15278787-15279110:+|1.3679421168972656|0.0061357684209942|7.8|151.0|15|1|anti-sense AluSz6_dup15325|chr6:15278787-15279110:+|1.3679421168972656|0.0061357684209942|7.8|151.0|15|1|anti-sense AluSz6_dup15325|chr6:15278787-15279110:+|1.3679421168972656|0.0061357684209942|7.8|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_2 6 600.0706176757812 2 600.311087 1198.60762 NaN NaN NaN NaN NaN NaN NaN 36.032 1 39.719 39.219 40.219 3.6877 0 0 0 0.40738 1 6014 6014 0.79363 0.10326 1 13480 380 8597 8603 16618 16618 0.01626067021925337 IFFFIFAFF 9 Unmodified _IFFFIFAFF_ 0 0 0 REV__L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|4|1|sense REV__L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 599.81982421875 2 599.820421 1197.62629 NaN NaN NaN NaN NaN NaN NaN 42.913 1 46.153 45.653 46.653 3.2394 0 0 0 0.40038 1 8853 8853 0.6015 0 1 + 13481 24591 8598 8604 16619 16619 0.035381838730927484 IFFFKLIY 8 Unmodified _IFFFKLIY_ 0 0 0 REV__L1MA9_dup7878|chr8:61531645-61532614:-|1.3494223763782354|0.0307257051483573|5.46|150.0|43|1|anti-sense REV__L1MA9_dup7878|chr8:61531645-61532614:-|1.3494223763782354|0.0307257051483573|5.46|150.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 545.822021484375 2 545.820421 1089.62629 NaN NaN NaN NaN NaN NaN NaN 30.916 1 34.647 34.147 35.147 3.7312 0 0 0 0.40738 1 5116 5116 0.79363 0 1 + 13482 25644 8599 8605 16620 16620 0.08506183873146256 IFFFLQECPH 10 Unmodified _IFFFLQECPH_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|104|2|anti-sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|104|2|anti-sense MSMS UPN47_class_I_Rep_3 4 640.8110961914062 2 640.810259 1279.60597 NaN NaN NaN NaN NaN NaN NaN 81.286 1 84.609 84.109 85.109 3.3231 0 0 0 0.53105 1 20341 20341 13.906 1.3745 1 + 13483 30285 8600 8606 16621 16621 -0.022653548489870445 IFFFLQECPH 10 Unmodified _IFFFLQECPH_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|104|2|anti-sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|104|2|anti-sense MSMS UPN47_class_I_Rep_3 4 640.8118896484375 2 640.810259 1279.60597 NaN NaN NaN NaN NaN NaN NaN 81.41 1 84.733 84.233 85.233 3.3231 0 0 0 0.53105 1 20372 20372 22.736 4.3632 1 + 13484 30285 8600 8606 16622 16622 -0.022653548489870445 IFFFLQECPH 10 Unmodified _IFFFLQECPH_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|104|2|anti-sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|104|2|anti-sense MSMS UPN47_class_I_Rep_3 4 640.8116455078125 2 640.810259 1279.60597 NaN NaN NaN NaN NaN NaN NaN 81.535 1 84.858 84.358 85.358 3.3231 0 0 0 0.53105 1 20407 20407 22.736 4.6013 1 + 13485 30285 8600 8606 16623 16623 -0.022653548489870445 IFFMRERI 8 Unmodified _IFFMRERI_ 0 0 0 ENST00000275732.5_1_7:100286590-100286938:-|nuORF ENST00000275732.5_1_7:100286590-100286938:-|nuORF ENST00000275732.5_1_7:100286590-100286938:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.3078002929688 2 556.307687 1110.60082 NaN NaN NaN NaN NaN NaN NaN 82.328 1 85.665 85.165 86.165 3.337 0 0 0 0.40738 1 20633 20633 0.79363 0 1 13486 6022 8601 8607 16624 16624 0.04994386079056312 IFFNHFIY 8 Unmodified _IFFNHFIY_ 0 0 0 REV__L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|75|3|anti-sense REV__L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|75|3|anti-sense MSMS UPN47_class_I_Rep_3 4 550.7969970703125 2 550.781828 1099.5491 NaN NaN NaN NaN NaN NaN NaN 71.918 1 75.137 74.637 75.637 3.2188 0 0 0 0.38221 1 17675 17675 14.582 4.3983 1 + 13487 30468 8602 8608 16625 16625 0.0033096565680352796 IFFNKCVR 8 Unmodified _IFFNKCVR_ 0 0 0 Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|1|1|sense Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|1|1|sense Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 513.7899169921875 2 513.781305 1025.54806 NaN NaN NaN NaN NaN NaN NaN 34.531 1 37.957 37.457 38.457 3.4253 0 0 0 0.40404 1 6258 6258 5.2307 1.2863 1 13488 33345 8603 8609 16626 16626 0.03630428016231235 IFFRLFWKDFA 11 Unmodified _IFFRLFWKDFA_ 0 0 0 ENST00000586759.1_1_19:2476166-2476346:+|nuORF ENST00000586759.1_1_19:2476166-2476346:+|nuORF ENST00000586759.1_1_19:2476166-2476346:+|nuORF MSMS UPN48_class_I_Rep_2 6 497.2705993652344 3 497.271207 1488.79179 NaN NaN NaN NaN NaN NaN NaN 27.343 1 30.975 30.475 31.475 3.6311 0 0 0 0.38417 1 3610 3610 0.50596 0 1 13489 7587 8604 8610 16627 16627 0.06694790661958905 IFFSNGYP 8 Unmodified _IFFSNGYP_ 0 0 0 L1ME3B_dup1615|chr3:136711580-136712015:+|1.0736793882527629|0.0146982915715114|6.19|150.0|24|2|anti-sense L1ME3B_dup1615|chr3:136711580-136712015:+|1.0736793882527629|0.0146982915715114|6.19|150.0|24|2|anti-sense L1ME3B_dup1615|chr3:136711580-136712015:+|1.0736793882527629|0.0146982915715114|6.19|150.0|24|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.7288513183594 2 472.729261 943.443968 0.24668 0.00011661 0.27582 0.00013039 0.52249 0.000247 472.72916687515334 95.261 0.18871 95.261 95.172 95.36 0 20 17 2 0 0 0 0.82752 1 23112 23112 9.3474 3.587 1 398220 13490 12698 8605 8611 16628 16628 -0.03001575539622081 IFFSNGYP 8 Unmodified _IFFSNGYP_ 0 0 0 L1ME3B_dup1615|chr3:136711580-136712015:+|1.0736793882527629|0.0146982915715114|6.19|150.0|24|2|anti-sense L1ME3B_dup1615|chr3:136711580-136712015:+|1.0736793882527629|0.0146982915715114|6.19|150.0|24|2|anti-sense L1ME3B_dup1615|chr3:136711580-136712015:+|1.0736793882527629|0.0146982915715114|6.19|150.0|24|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 472.729261 943.443968 0.21694 0.00010256 -0.23731 -0.00011218 -0.020366 -9.6277E-06 472.72915129687283 91.714 0.066093 95.577 95.545 95.611 3.8634 0.15836 -0.00010424 NaN 9.3474 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 103450 13491 12698 8605 8611 -0.03001575539622081 IFFVFIFLVWL 11 Unmodified _IFFVFIFLVWL_ 0 0 0 REV__L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|56|1|anti-sense REV__L1ME1_dup15707|chr8:125318612-125319801:+|3.268834159536243|0.0100059352448711|8.35|151.0|56|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 481.28350830078125 3 481.952815 1442.83662 0.12207 5.883E-05 0.22403 0.00010797 0.3461 0.0001668 481.95242248825144 94.703 0.11099 98.32 98.271 98.382 3.6167 25 13 3 0 0 0 22.551 1 22798 22798 0.50596 0.09769 1 108500 + 13492 27618 8606 8612 16629 16629 0.13291221475310522 IFFWFYHF 8 Unmodified _IFFWFYHF_ 0 0 0 REV__L1MEd_dup8847|chr6:149358674-149359891:-|1.2119058486029708|0.0367737180583201|5.04|151.0|84|3|anti-sense REV__L1MEd_dup8847|chr6:149358674-149359891:-|1.2119058486029708|0.0367737180583201|5.04|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_1 5 603.7919311523438 2 603.792195 1205.56984 NaN NaN NaN NaN NaN NaN NaN 28.261 1 31.818 31.318 32.318 3.5571 0 0 0 0.40738 1 3754 3754 0.79363 0 1 + 13493 28591 8607 8613 16630 16630 -0.024724439635519957 IFGFVCPY 8 Unmodified _IFGFVCPY_ 0 0 0 REV__HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|102|2|anti-sense REV__HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|102|2|anti-sense MSMS UPN48_class_I_Rep_3 7 473.230712890625 2 473.230582 944.446611 NaN NaN NaN NaN NaN NaN NaN 98.314 1 102.22 101.72 102.72 3.9022 0 0 0 0.40581 1 23300 23300 2.8892 0 1 + 13494 23463 8608 8614 16631 16631 -0.027834434063152003 IFGHEPGRTV 10 Unmodified _IFGHEPGRTV_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MSMS UPN47_class_I_Rep_3 4 556.7979125976562 2 556.795998 1111.57744 NaN NaN NaN NaN NaN NaN NaN 54.312 1 57.497 56.997 57.997 3.1856 0 0 0 0.53105 1 12322 12322 2.9952 0.69251 1 + 13495 20772 8609 8615 16632 16632 0.026116635660855536 IFGIFPNQF 9 Unmodified _IFGIFPNQF_ 0 0 0 ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;chr15:50107008-50114426|134|10.27|0.14|6.19|-|ENST00000559829|ATP8B4,ATP8B4 ENST00000558906.5_1_15:50152393-50311102:-|nuORF ENST00000558906.5_1_15:50152393-50311102:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 541.7872924804688 2 541.78711 1081.55967 0.39639 0.00021476 -0.022524 -1.2203E-05 0.37387 0.00020256 541.7869546312528 90.837 0.41843 94.463 94.12 94.538 3.626 139 56 3 0 0 0 0.0088319 4 21840 21763;21786;21811;21840 70.716 32.564 1 519320 13496 588 8610 8616 16633;16634;16635;16636 16636 0.02214948311234366 IFGIFPNQF 9 Unmodified _IFGIFPNQF_ 0 0 0 ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;chr15:50107008-50114426|134|10.27|0.14|6.19|-|ENST00000559829|ATP8B4,ATP8B4 ENST00000558906.5_1_15:50152393-50311102:-|nuORF ENST00000558906.5_1_15:50152393-50311102:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 541.7872924804688 2 541.78711 1081.55967 0.39607 0.00021458 0.075987 4.1169E-05 0.47205 0.00025575 541.7870112082023 90.994 0.21002 94.62 94.515 94.726 3.626 60 26 3 0 0 0 0.045397 1 21869 21869 50.855 22.682 1 373380 13497 588 8610 8616 16637 16637 0.02214948311234366 IFGIFPNQF 9 Unmodified _IFGIFPNQF_ 0 0 0 ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;chr15:50107008-50114426|134|10.27|0.14|6.19|-|ENST00000559829|ATP8B4,ATP8B4 ENST00000558906.5_1_15:50152393-50311102:-|nuORF ENST00000558906.5_1_15:50152393-50311102:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 541.78711 1081.55967 0.4814 0.00026081 -0.15772 -8.5453E-05 0.32367 0.00017536 541.7869171868698 90.726 0.63809 94.482 94.085 94.723 3.7554 0.0153 -3.1957E-05 NaN 70.716 201 93 3 NaN NaN NaN NaN 0 NaN NaN 0 748670 13498 588 8610 8616 0.02214948311234366 IFGIFPNQF 9 Unmodified _IFGIFPNQF_ 0 0 0 ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;chr15:50107008-50114426|134|10.27|0.14|6.19|-|ENST00000559829|ATP8B4,ATP8B4 ENST00000558906.5_1_15:50152393-50311102:-|nuORF ENST00000558906.5_1_15:50152393-50311102:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 541.78711 1081.55967 0.53818 0.00029158 -0.23653 -0.00012815 0.30165 0.00016343 541.7869023861755 90.607 0.32992 94.454 94.155 94.485 3.847 -0.012094 -0.00011735 NaN 70.716 87 46 2 NaN NaN NaN NaN 0 NaN NaN 0 471200 13499 588 8610 8616 0.02214948311234366 IFGIFPNQF 9 Unmodified _IFGIFPNQF_ 0 0 0 ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4;chr15:50107008-50114426|134|10.27|0.14|6.19|-|ENST00000559829|ATP8B4,ATP8B4 ENST00000558906.5_1_15:50152393-50311102:-|nuORF ENST00000558906.5_1_15:50152393-50311102:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 541.78711 1081.55967 0.53654 0.00029069 -0.066099 -3.5811E-05 0.47044 0.00025488 541.786924421248 90.739 0.25214 94.586 94.485 94.737 3.847 -0.016894 -5.9126E-05 NaN 50.855 91 35 3 NaN NaN NaN NaN 0 NaN NaN 0 386050 13500 588 8610 8616 0.02214948311234366 IFGLINEH 8 Unmodified _IFGLINEH_ 0 0 0 REV__ENSG00000115170|ENST00000434821|ACVR1;REV__nc|ENSG00000123612|Q8NER5-3|ACVR1C;REV__ENSG00000138696|ENST00000515059|BMPR1B;REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 471.75579833984375 2 471.75581 941.497067 0.19965 9.4188E-05 -0.1112 -5.246E-05 0.088452 4.1728E-05 471.75565038158027 48.08 0.92013 48.08 47.763 48.683 0 237 96 3 0 0 0 0.82752 1 10117 10117 19.439 0 1 1890000 + 13501 22165;18545;18787;19285 8611 8617 16638 16638 0.02397802243035585 IFGRLKRKQK 10 Unmodified _IFGRLKRKQK_ 0 0 0 REV__L1MDa_dup5035|chr12:10842313-10843688:-|1.322244843353653|0.0192167763643121|6.1|150.0|84|2|anti-sense REV__L1MDa_dup5035|chr12:10842313-10843688:-|1.322244843353653|0.0192167763643121|6.1|150.0|84|2|anti-sense MSMS UPN48_class_I_Rep_3 7 637.4148559570312 2 637.414406 1272.81426 NaN NaN NaN NaN NaN NaN NaN 76.108 1 79.691 79.191 80.191 3.5831 0 0 0 0.53105 1 17914 17914 0.40072 0 1 + 13502 27532 8612 8618 16639 16639 0.1887643485024455 IFGVIIDTF 9 Unmodified _IFGVIIDTF_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1 ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS UPN48_class_I_Rep_1 5 512.7893676757812 2 512.789318 1023.56408 0.23615 0.00012109 -0.020298 -1.0409E-05 0.21585 0.00011068 512.789209038405 92.953 0.23218 96.577 96.435 96.668 3.624 64 29 3 0 0 0 0.024782 1 22324 22324 60.39 13.469 1 225670 13503 1426;2407 8613 8619 16640 16640 0.053244127341372405 IFGVIIDTF 9 Unmodified _IFGVIIDTF_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1 ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS UPN48_class_I_Rep_1 5 512.7893676757812 2 512.789318 1023.56408 0.23582 0.00012093 -0.024934 -1.2786E-05 0.21089 0.00010814 512.7892175631777 93.177 0.3622 96.801 96.644 97.006 3.624 73 45 2 0 0 0 0.066041 1 22383 22383 42.095 18.946 1 182350 13504 1426;2407 8613 8619 16641 16641 0.053244127341372405 IFHHIQKNQ 9 Unmodified _IFHHIQKNQ_ 0 0 0 L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|21|2|sense L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|21|2|sense L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.8087768554688 2 582.817264 1163.61998 0.48509 0.00028272 -1.031 -0.00060086 -0.54586 -0.00031814 582.8165581275153 68.746 0.68723 72.254 71.901 72.589 3.5083 54 23 3 0 0 0 0.48846 1 15822 15822 1.8442 0.51471 1 1079300 13505 9740 8614 8620 16642 16642 0.0447105869434381 IFHQSAVGLGD 11 Unmodified _IFHQSAVGLGD_ 0 0 0 L1ME3G_dup5307|chr5:132925737-132926130:+|1.3592244237792674|0.0447538997847863|4.92|151.0|24|3|anti-sense L1ME3G_dup5307|chr5:132925737-132926130:+|1.3592244237792674|0.0447538997847863|4.92|151.0|24|3|anti-sense L1ME3G_dup5307|chr5:132925737-132926130:+|1.3592244237792674|0.0447538997847863|4.92|151.0|24|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.7950439453125 2 572.293288 1142.57202 -0.099531 -5.6961E-05 -0.11465 -6.5613E-05 -0.21418 -0.00012257 572.2932213963009 35.617 0.86015 38.872 38.531 39.391 3.2547 107 56 3 0 0 0 0.65559 2 6562 6562;6747 2.7352 0.89096 1 173070 13506 12841 8615 8621 16643;16644 16643 0.006439399836153825 IFHVNFKRMC 10 Unmodified _IFHVNFKRMC_ 0 0 0 L1ME1_dup5137|chr2:230768792-230769696:+|2.0537343670211503|0.0117899487246037|7.44|151.0|57|2|anti-sense L1ME1_dup5137|chr2:230768792-230769696:+|2.0537343670211503|0.0117899487246037|7.44|151.0|57|2|anti-sense L1ME1_dup5137|chr2:230768792-230769696:+|2.0537343670211503|0.0117899487246037|7.44|151.0|57|2|anti-sense MSMS UPN48_class_I_Rep_1 5 647.830810546875 2 647.831003 1293.64745 NaN NaN NaN NaN NaN NaN NaN 33.932 1 37.452 36.952 37.952 3.5201 0 0 0 0.53105 1 5360 5360 0.45834 0 1 13507 12415 8616 8622 16645 16645 0.012375026386962418 IFHWKERLT 9 Unmodified _IFHWKERLT_ 0 0 0 ENST00000360566.6_1_2:10269382-10269442:+|nuORF ENST00000360566.6_1_2:10269382-10269442:+|nuORF ENST00000360566.6_1_2:10269382-10269442:+|nuORF MSMS UPN48_class_I_Rep_1 5 615.343017578125 2 615.343115 1228.67168 NaN NaN NaN NaN NaN NaN NaN 61.12 1 64.594 64.094 65.094 3.4737 0 0 0 0.40038 1 13573 13573 0.6015 0 1 13508 6321 8617 8623 16646 16646 0.06648802388212971 IFIDEIDSF 9 Unmodified _IFIDEIDSF_ 0 0 0 nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 MULTI-MSMS UPN48_class_I_Rep_2 6 549.7716064453125 2 549.771322 1097.52809 0.48742 0.00026797 -0.085207 -4.6844E-05 0.40222 0.00022113 549.7711900855016 84.018 0.53166 87.7 87.399 87.931 3.6814 79 60 2 0 0 0 0.005134 4 19950 19917;19950;19985;20026 112.59 74.442 1 178650 13509 3068 8618 8624 16647;16648;16649;16650 16648 -0.016770892333852316 IFIDEIDSF 9 Unmodified _IFIDEIDSF_ 0 0 0 nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 MULTI-MSMS UPN48_class_I_Rep_3 7 549.7713012695312 2 549.771322 1097.52809 0.44955 0.00024715 -0.38492 -0.00021162 0.064631 3.5532E-05 549.7710617097057 83.905 0.54738 87.633 87.432 87.979 3.7281 72 64 2 0 0 0 0.023254 2 19905 19871;19905 61.357 35.958 1 139900 13510 3068 8618 8624 16651;16652 16652 -0.016770892333852316 IFIDIMLAI 9 Unmodified _IFIDIMLAI_ 0 0 0 Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|12|1|sense Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|12|1|sense Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 524.8125 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 50.478 1 54.099 53.599 54.599 3.621 0 0 0 0.11494 1 10245 10245 21.747 4.6338 1 13511 33025 8619 8625 16653 16653 0.08194216413176036 IFIDPGYQTF 10 Unmodified _IFIDPGYQTF_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS UPN48_class_I_Rep_1 5 600.8005981445312 2 600.800414 1199.58628 0.44735 0.00026877 0.079788 4.7936E-05 0.52714 0.0003167 600.8003171866105 77.288 0.6402 80.798 80.51 81.151 3.5102 127 56 3 0 0 0 0.22181 4 18364 18329;18364;18401;18438 53.404 26.52 1 260400 13512 2362 8620 8626 16654;16655;16656;16657 16655 -0.005534075881087119 IFIDPGYQTF 10 Unmodified _IFIDPGYQTF_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS UPN48_class_I_Rep_2 6 600.800537109375 2 600.800414 1199.58628 0.48087 0.00028891 0.16432 9.8726E-05 0.6452 0.00038764 600.8003636243997 77.187 0.70837 80.798 80.483 81.191 3.6116 148 68 3 0 0 0 0.21352 5 18212 18173;18212;18250;18284;18328 53.404 26.52 1 352490 13513 2362 8620 8626 16658;16659;16660;16661;16662 16659 -0.005534075881087119 IFIDPGYQTF 10 Unmodified _IFIDPGYQTF_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS UPN48_class_I_Rep_3 7 600.8002319335938 2 600.800414 1199.58628 0.58054 0.00034879 0.059683 3.5858E-05 0.64022 0.00038464 600.8003081782548 77.186 0.75191 80.787 80.456 81.208 3.6016 135 64 3 0 0 0 0.18503 5 18253 18147;18184;18219;18253;18291 61.602 34.718 1 337870 13514 2362 8620 8626 16663;16664;16665;16666;16667 16666 -0.005534075881087119 IFIEAECCC 9 Unmodified _IFIEAECCC_ 0 0 0 AluJr_dup29597|chr7:5355347-5355601:+|1.0085522461902137|0.2098941146452054|2.26|151.0|17|3|anti-sense AluJr_dup29597|chr7:5355347-5355601:+|1.0085522461902137|0.2098941146452054|2.26|151.0|17|3|anti-sense AluJr_dup29597|chr7:5355347-5355601:+|1.0085522461902137|0.2098941146452054|2.26|151.0|17|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7059936523438 2 515.705756 1029.39696 NaN NaN NaN NaN NaN NaN NaN 73.301 1 73.301 72.801 73.801 0 0 0 0 0.381 1 16986 16986 5.2307 2.3415 1 13515 143 8621 8627 16668 16668 -0.11656262468932255 IFIEGMAK 8 Unmodified _IFIEGMAK_ 0 0 0 REV__ENST00000555550.1_1_14:31191003-31191777:+|nuORF REV__ENST00000555550.1_1_14:31191003-31191777:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 454.750732421875 2 454.749139 907.483725 -0.30376 -0.00013814 0.54787 0.00024915 0.24411 0.00011101 454.7510491647235 45.904 0.5918 49.258 49.019 49.611 3.3535 57 39 2 0 0 0 0.72333 1 9729 9729 6.7232 0 1 75944 + 13516 22988 8622 8628 16669 16669 0.02628228139451494 IFIEHSTQE 9 Unmodified _IFIEHSTQE_ 0 0 0 L1PB3_dup904|chr4:152820800-152823498:+|1.5714630896241404|0.0579898872887638|4.76|151.0|55|2|sense L1PB3_dup904|chr4:152820800-152823498:+|1.5714630896241404|0.0579898872887638|4.76|151.0|55|2|sense L1PB3_dup904|chr4:152820800-152823498:+|1.5714630896241404|0.0579898872887638|4.76|151.0|55|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.2723388671875 2 552.272021 1102.52949 0.090774 5.0132E-05 -0.21063 -0.00011633 -0.11986 -6.6193E-05 552.2718100774707 43.719 1.041 47.414 46.951 47.992 3.6951 121 60 3 0 0 0 0.48846 1 9158 9158 1.8442 0.19162 1 283880 13517 15287 8623 8629 16670 16670 -0.0176745514461345 IFINRFNR 8 Unmodified _IFINRFNR_ 0 0 0 L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|10|1|sense L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|10|1|sense L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 540.3096923828125 2 540.309075 1078.6036 NaN NaN NaN NaN NaN NaN NaN 75.36 1 75.36 74.86 75.86 0 0 0 0 0.40625 1 17518 17518 2.3027 0 1 13518 8890 8624 8630 16671 16671 0.06743977528230971 IFIQQVVW 8 Unmodified _IFIQQVVW_ 0 0 0 REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|48|1|anti-sense REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_1 2 516.7976684570312 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 32.724 1 36.437 35.937 36.937 3.7131 0 0 0 0.40738 1 5668 5668 0.79363 0 1 + 13519 26444 8625 8631 16672 16672 0.06587538690905603 IFISTNIALI 10 Unmodified _IFISTNIALI_ 0 0 0 Tigger1_dup4129|chr5:70431265-70431881:+|1.014488830010521|0.1233941591136353|3.04|138.0|3|1|sense Tigger1_dup4129|chr5:70431265-70431881:+|1.014488830010521|0.1233941591136353|3.04|138.0|3|1|sense Tigger1_dup4129|chr5:70431265-70431881:+|1.014488830010521|0.1233941591136353|3.04|138.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.8360595703125 2 552.8368 1103.65905 0.45741 0.00025287 -0.47943 -0.00026505 -0.022021 -1.2174E-05 552.8364651979159 61.354 1.0369 64.62 64.292 65.329 3.2654 145 71 3 0 0 0 0.31818 1 14319 14319 27.629 2.2295 1 481630 13520 33089 8626 8632 16673 16673 0.11136346205330483 IFIYCVQMN 9 Unmodified _IFIYCVQMN_ 0 0 0 REV__L1PA6_dup862|chr2:208395714-208397316:+|1.90585448789774|0.0194824047564396|6.61|135.0|80|3|anti-sense REV__L1PA6_dup862|chr2:208395714-208397316:+|1.90585448789774|0.0194824047564396|6.61|135.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 565.7728271484375 2 565.772288 1129.53002 NaN NaN NaN NaN NaN NaN NaN 30.908 1 34.45 33.95 34.95 3.542 0 0 0 0.39326 1 4504 4504 2.3027 0 1 + 13521 29953 8627 8633 16674 16674 -0.029560750207792807 IFIYRQIR 8 Unmodified _IFIYRQIR_ 0 0 0 L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|14|2|sense L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|14|2|sense L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 554.8328857421875 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 86.077 1 89.449 88.949 89.949 3.3716 0 0 0 0.40738 1 21573 21573 0.79363 0 1 13522 12082 8628 8634 16675 16675 0.1057772122210281 IFKDKDQTI 9 Unmodified _IFKDKDQTI_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000487498.1_1_3:123649947-123650302:-|nuORF;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MSMS UPN47_class_I_Rep_2 3 554.3065795898438 2 554.305864 1106.59717 0.51454 0.00028521 -0.41745 -0.00023139 0.097088 5.3817E-05 554.3055064972921 53.013 1.1008 56.339 56.031 57.132 3.3266 116 71 3 0 0 0 0.23293 2 11991 11991;12044 18.146 0 1 278330 13523 4724 8629 8635 16676;16677 16676 0.04813994786195508 IFKDKDQTI 9 Unmodified _IFKDKDQTI_ 0 0 0 nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000487498.1_1_3:123649947-123650302:-|nuORF;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF nc|ENSG00000175455|Q49A88-2|CCDC14 nc|ENSG00000175455|Q49A88-2|CCDC14 MULTI-MSMS UPN47_class_I_Rep_3 4 554.8082275390625 2 554.305864 1106.59717 0.48653 0.00026969 -0.23754 -0.00013167 0.249 0.00013802 554.3055902104691 53.149 0.77464 56.344 56.101 56.876 3.1948 101 44 3 0 0 0 0.23293 1 12094 12094 18.146 0 1 230660 13524 4724 8629 8635 16678 16678 0.04813994786195508 IFKFKKLLAIK 11 Unmodified _IFKFKKLLAIK_ 0 0 0 L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|42|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 450.2815856933594 3 450.307481 1347.90061 0.081045 3.6495E-05 0.17777 8.005E-05 0.25881 0.00011655 450.3075075148755 42.302 0.11415 45.943 45.855 45.969 3.6415 14 10 2 0 0 0 22.551 1 7719 7719 0.094841 0 1 49907 13525 11014 8630 8636 16679 16679 0.2405800163226104 IFKKFKKVRK 10 Unmodified _IFKKFKKVRK_ 0 0 0 REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 441.76416015625 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 47.929 1 47.929 47.429 48.429 0 0 0 0 0.53105 1 9945 9945 0.77653 0.36827 1 + 13526 32735 8631 8637 16680 16680 0.22819366549515507 IFKKFKKVRK 10 Unmodified _IFKKFKKVRK_ 0 0 0 REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 441.2974548339844 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 62.641 1 66.104 65.604 66.604 3.4625 0 0 0 0.53105 1 14037 14037 0.15932 0.064481 1 + 13527 32735 8631 8637 16681 16681 0.22819366549515507 IFKNTPKKKYS 11 Unmodified _IFKNTPKKKYS_ 0 0 0 REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 451.93292236328125 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 92.027 1 95.653 95.153 96.153 3.626 0 0 0 0.38417 1 22120 22120 1.3296 0.11481 1 + 13528 25378 8632 8638 16682 16682 0.1193418293673858 IFKNTPKKKYS 11 Unmodified _IFKNTPKKKYS_ 0 0 0 REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 451.93212890625 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 92.188 1 95.814 95.314 96.314 3.626 0 0 0 0.38417 1 22156 22156 1.3296 0.11481 1 + 13529 25378 8632 8638 16683 16683 0.1193418293673858 IFKNTPKKKYS 11 Unmodified _IFKNTPKKKYS_ 0 0 0 REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense MSMS UPN48_class_I_Rep_2 6 451.93280029296875 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 92.011 1 95.774 95.274 96.274 3.7629 0 0 0 0.38417 1 21904 21904 1.3296 0.11481 1 + 13530 25378 8632 8638 16684 16684 0.1193418293673858 IFKNTPKKKYS 11 Unmodified _IFKNTPKKKYS_ 0 0 0 REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense MSMS UPN48_class_I_Rep_2 6 451.9309997558594 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 92.076 1 95.839 95.339 96.339 3.7629 0 0 0 0.38417 1 21919 21919 1.3296 0.11481 1 + 13531 25378 8632 8638 16685 16685 0.1193418293673858 IFKNTPKKKYS 11 Unmodified _IFKNTPKKKYS_ 0 0 0 REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense MSMS UPN48_class_I_Rep_2 6 451.932373046875 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 92.582 1 96.345 95.845 96.845 3.7629 0 0 0 0.38417 1 22029 22029 1.3296 0.55311 1 + 13532 25378 8632 8638 16686 16686 0.1193418293673858 IFKNTPKKKYS 11 Unmodified _IFKNTPKKKYS_ 0 0 0 REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense REV__L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|55|3|sense MSMS UPN48_class_I_Rep_3 7 451.9327392578125 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 91.784 1 95.647 95.147 96.147 3.8634 0 0 0 0.38417 1 21768 21768 1.3296 0.11481 1 + 13533 25378 8632 8638 16687 16687 0.1193418293673858 IFKSFIMK 8 Unmodified _IFKSFIMK_ 0 0 0 Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|143|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|143|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|143|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.2962951660156 2 507.296256 1012.57796 0.032239 1.6355E-05 -0.191 -9.6892E-05 -0.15876 -8.0538E-05 507.2960764945366 45.047 0.63656 48.291 47.949 48.585 3.2441 68 42 2 0 0 0 0.82752 1 9513 9513 6.7232 0 1 94493 13534 33191 8633 8639 16688 16688 0.07217366961583593 IFKSFIMK 8 Unmodified _IFKSFIMK_ 0 0 0 Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|143|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|143|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|143|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 507.296256 1012.57796 -0.086254 -4.3756E-05 -0.31804 -0.00016134 -0.40429 -0.0002051 507.29598531250895 44.431 0.92259 48.126 47.496 48.419 3.6951 -0.082614 -4.1379E-05 NaN 6.7232 109 62 2 NaN NaN NaN NaN 0 NaN NaN 0 73809 13535 33191 8633 8639 0.07217366961583593 IFKVHPCYI 9 Unmodified _IFKVHPCYI_ 0 0 0 L1MB3_dup13885|chr15:89839589-89840243:+|1.2052591855410062|0.1382442050357745|3.12|151.0|30|2|anti-sense L1MB3_dup13885|chr15:89839589-89840243:+|1.2052591855410062|0.1382442050357745|3.12|151.0|30|2|anti-sense L1MB3_dup13885|chr15:89839589-89840243:+|1.2052591855410062|0.1382442050357745|3.12|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_1 2 560.3060913085938 2 560.304613 1118.59467 NaN NaN NaN NaN NaN NaN NaN 58.039 1 61.476 60.976 61.976 3.437 0 0 0 0.28335 1 13371 13371 11.64 2.2929 1 13536 10348 8634 8640 16689 16689 0.04011867847520989 IFLAGIFMG 9 Unmodified _IFLAGIFMG_ 0 0 0 REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.76715087890625 2 484.767332 967.52011 0.13259 6.4273E-05 -0.47386 -0.00022971 -0.34127 -0.00016544 484.767076567402 94.418 0.24117 98.038 97.919 98.16 3.6208 38 29 2 0 0 0 0.48414 1 22714 22714 2.3027 0 1 69920 + 13537 26276 8635 8641 16690 16690 0.03505105036163059 IFLAGIFMG 9 Unmodified _IFLAGIFMG_ 0 0 0 REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 484.7672424316406 2 484.767332 967.52011 NaN NaN NaN NaN NaN NaN NaN 93.796 1 97.688 97.188 98.188 3.8914 0 0 0 0.39326 1 22236 22236 2.3027 0 1 + 13538 26276 8635 8641 16691 16691 0.03505105036163059 IFLAGIFMG 9 Unmodified _IFLAGIFMG_ 0 0 0 REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 484.767333984375 2 484.767332 967.52011 NaN NaN NaN NaN NaN NaN NaN 93.964 1 97.856 97.356 98.356 3.8914 0 0 0 0.39326 1 22274 22274 2.3027 0 1 + 13539 26276 8635 8641 16692 16692 0.03505105036163059 IFLAGIFMG 9 Unmodified _IFLAGIFMG_ 0 0 0 REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|18|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 484.767332 967.52011 0.24784 0.00012014 -1.223 -0.00059287 -0.97517 -0.00047273 484.76709553209673 93.932 0.15683 97.708 97.567 97.724 3.7761 -0.16511 -0.00062118 NaN 2.3027 26 20 3 NaN NaN NaN NaN 0 NaN NaN 0 68305 + 13540 26276 8635 8641 0.03505105036163059 IFLCILFFRNF 11 Unmodified _IFLCILFFRNF_ 0 0 0 L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|96|3|anti-sense L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|96|3|anti-sense L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|96|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.2637634277344 3 478.265176 1431.7737 0.13094 6.2622E-05 -0.27669 -0.00013233 -0.14576 -6.9711E-05 478.2651887185715 40.506 0.24693 44.157 44.058 44.305 3.6509 25 20 2 0 0 0 0.63233 1 7232 7232 4.4062 1.9714 1 83832 13541 12061 8636 8642 16693 16693 0.0750833241561395 IFLCKAFFA 9 Unmodified _IFLCKAFFA_ 0 0 0 REV__Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|37|3|sense REV__Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|37|3|sense MSMS UPN47_class_I_Rep_3 4 530.2435302734375 2 530.288431 1058.56231 NaN NaN NaN NaN NaN NaN NaN 116.45 1 119.91 119.41 120.41 3.462 0 0 0 0.40038 1 28656 28656 0.6015 0 1 + 13542 32643 8637 8643 16694 16694 0.03537080444539242 IFLDALDKI 9 Unmodified _IFLDALDKI_ 0 0 0 ENSG00000164879|ENST00000285381|CA3 ENSG00000164879|ENST00000285381|CA3 ENSG00000164879|ENST00000285381|CA3 MULTI-MSMS UPN47_class_I_Rep_2 3 524.3082885742188 2 524.307875 1046.6012 0.024915 1.3063E-05 -0.26327 -0.00013803 -0.23835 -0.00012497 524.3075691594958 69.587 1.0399 72.863 72.408 73.448 3.2761 242 86 4 0 0 0 0.13244 1 17018 17018 27.629 3.6082 1 732220 13543 4139 8638 8644 16695 16695 0.07976084279880524 IFLFRHVIL 9 Unmodified _IFLFRHVIL_ 0 0 0 REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|178|1|anti-sense REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|178|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.353271484375 2 579.363319 1156.71209 0.47916 0.00027761 0.92235 0.00053438 1.4015 0.00081198 579.3648586653136 109.29 0.35269 112.97 112.81 113.17 3.6715 96 45 3 0 0 0 0.46434 1 26045 26045 4.3292 0.38484 1 2743900 + 13544 26318 8639 8645 16696 16696 0.1399976877867175 IFLHESPH 8 Unmodified _IFLHESPH_ 0 0 0 REV__ENSG00000168939|ENST00000695325|SPRY3 REV__ENSG00000168939|ENST00000695325|SPRY3 MULTI-MSMS UPN47_class_I_Rep_1 2 490.75506591796875 2 490.253434 978.492316 -0.28182 -0.00013816 -0.56818 -0.00027855 -0.85 -0.00041671 490.25306649742134 34.636 0.40875 38.322 38.102 38.511 3.6859 57 32 2 0 0 0 0.82752 1 6260 6260 5.2307 0 1 91361 + 13545 20290 8640 8646 16697 16697 0.002209181002854166 IFLHLSQIF 9 Unmodified _IFLHLSQIF_ 0 0 0 L1MA5A_dup1272|chr6:2337358-2337994:+|2.9944397337471225|0.0681708047732471|5.46|151.0|40|2|anti-sense L1MA5A_dup1272|chr6:2337358-2337994:+|2.9944397337471225|0.0681708047732471|5.46|151.0|40|2|anti-sense L1MA5A_dup1272|chr6:2337358-2337994:+|2.9944397337471225|0.0681708047732471|5.46|151.0|40|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 559.802734375 2 559.32386 1116.63317 0.49726 0.00027813 -0.68563 -0.00038349 -0.18837 -0.00010536 559.3234169748725 69.093 0.6868 72.615 72.315 73.001 3.5216 78 52 3 0 0 0 0.11873 1 15945 15945 8.5933 0 1 143760 13546 9931 8641 8647 16698 16698 0.07951496753685205 IFLLYSRS 8 Unmodified _IFLLYSRS_ 0 0 0 L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|171|3|anti-sense L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|171|3|anti-sense L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|171|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.78662109375 2 499.78711 997.559667 NaN NaN NaN NaN NaN NaN NaN 66.66 1 66.66 66.16 67.16 0 0 0 0 0.39242 1 15136 15136 10.824 0 1 13547 9767 8642 8648 16699 16699 0.060789483112330345 IFLMIFGLI 9 Unmodified _IFLMIFGLI_ 0 0 0 ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|1|intron;ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|6|intron;ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|4|intron;ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|7|intron;ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|5|intron;ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|3|intron ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|1|intron ENSG00000137770.14,CTDSPL2,chr15,+,I10.1,44499814,44501961|29|7.43|1|intron MSMS UPN48_class_I_Rep_1 5 533.8242797851562 2 533.822107 1065.62966 NaN NaN NaN NaN NaN NaN NaN 54.041 1 57.555 57.055 58.055 3.5143 0 0 0 0.3264 1 11403 11403 9.3474 0 1 13548 3037 8643 8649 16700 16700 0.09947110655502911 IFLMYWLSFII 11 Unmodified _IFLMYWLSFII_ 0 0 0 L1MB7_dup2842|chr2:127345148-127346708:+|1.9571456234011224|0.019748044339677|6.63|151.0|118|3|anti-sense L1MB7_dup2842|chr2:127345148-127346708:+|1.9571456234011224|0.019748044339677|6.63|151.0|118|3|anti-sense L1MB7_dup2842|chr2:127345148-127346708:+|1.9571456234011224|0.019748044339677|6.63|151.0|118|3|anti-sense MSMS UPN47_class_I_Rep_1 2 482.6035461425781 3 482.601565 1444.78287 NaN NaN NaN NaN NaN NaN NaN 29.876 1 33.621 33.121 34.121 3.7449 0 0 0 0.38417 1 4808 4808 1.3296 0.11481 1 13549 10819 8644 8650 16701 16701 0.07826680981293066 IFLPAFPCH 9 Unmodified _IFLPAFPCH_ 0 0 0 ENST00000474738.1_1_7:6624591-6628538:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4 ENST00000474738.1_1_7:6624591-6628538:+|nuORF ENST00000474738.1_1_7:6624591-6628538:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 522.77099609375 2 522.770406 1043.52626 0.27418 0.00014334 -0.20534 -0.00010735 0.068843 3.5989E-05 522.7702431872643 65.499 1.1018 68.855 68.552 69.654 3.3557 127 66 2 0 0 0 0.37662 1 15718 15718 9.3474 0 1 302200 13550 2959 8645 8651 16702 16702 0.006236232676656073 IFLPLKYVLFR 11 Unmodified _IFLPLKYVLFR_ 0 0 0 L1MEf_dup9851|chr15:71905789-71906748:-|1.412251718912919|0.1438104708135533|3.3|151.0|66|3|anti-sense L1MEf_dup9851|chr15:71905789-71906748:-|1.412251718912919|0.1438104708135533|3.3|151.0|66|3|anti-sense L1MEf_dup9851|chr15:71905789-71906748:-|1.412251718912919|0.1438104708135533|3.3|151.0|66|3|anti-sense MSMS UPN47_class_I_Rep_2 3 470.2953796386719 3 470.295353 1407.86423 NaN NaN NaN NaN NaN NaN NaN 76.851 1 80.183 79.683 80.683 3.3315 0 0 0 0.38417 1 19037 19037 0.50596 0 1 13551 13348 8646 8652 16703 16703 0.17661124735514022 IFLQIWKVF 9 Unmodified _IFLQIWKVF_ 0 0 0 L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|155|2|anti-sense L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|155|2|anti-sense L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|155|2|anti-sense MSMS UPN48_class_I_Rep_3 7 597.3583984375 2 597.357702 1192.70085 NaN NaN NaN NaN NaN NaN NaN 90.871 1 94.718 94.218 95.218 3.847 0 0 0 0.39518 1 21550 21550 1.8442 0.19162 1 13552 10110 8647 8653 16704 16704 0.11220946684488808 IFLTPCMR 8 Unmodified _IFLTPCMR_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MSMS UPN48_class_I_Rep_1 5 490.7567443847656 2 490.756441 979.498329 NaN NaN NaN NaN NaN NaN NaN 26.336 1 29.903 29.403 30.403 3.5667 0 0 0 0.40604 1 3216 3216 2.5775 0 1 13553 2682 8648 8654 16705 16705 0.0077597701593958845 IFLWRKAG 8 Unmodified _IFLWRKAG_ 0 0 0 ENST00000360768.3_1_7:65420138-65420210:+|nuORF ENST00000360768.3_1_7:65420138-65420210:+|nuORF ENST00000360768.3_1_7:65420138-65420210:+|nuORF MSMS UPN47_class_I_Rep_1 2 495.7956848144531 2 495.797812 989.581071 NaN NaN NaN NaN NaN NaN NaN 61.185 1 64.566 64.066 65.066 3.3815 0 0 0 0.39624 1 14329 14329 9.3474 0.75416 1 13554 6322 8649 8655 16706 16706 0.08586378130610228 IFMGFRVTF 9 Unmodified _IFMGFRVTF_ 0 0 0 L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|75|3|anti-sense L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|75|3|anti-sense L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 559.5257568359375 2 559.296788 1116.57902 NaN NaN NaN NaN NaN NaN NaN 74.415 1 74.415 73.915 74.915 0 0 0 0 0.37476 1 17265 17265 6.7232 0 1 13555 9909 8650 8656 16707 16707 0.025395813304839976 IFMRTAWG 8 Unmodified _IFMRTAWG_ 0 0 0 THE1D_dup11634|chr18:32055376-32055683:-|1.394363044503548|0.007488757486971|7.54|151.0|17|1|anti-sense THE1D_dup11634|chr18:32055376-32055683:-|1.394363044503548|0.007488757486971|7.54|151.0|17|1|anti-sense THE1D_dup11634|chr18:32055376-32055683:-|1.394363044503548|0.007488757486971|7.54|151.0|17|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 490.7513732910156 2 491.25238 980.490207 -0.31622 -0.00015535 0.011264 5.5337E-06 -0.30496 -0.00014981 491.25268052769934 24.784 0.15463 28.533 28.448 28.603 3.7495 14 10 2 0 0 0 0.72333 1 3283 3283 2.5775 0 1 35399 13556 32948 8651 8657 16708 16708 -0.0008183390917793076 IFNELMLLAN 10 Unmodified _IFNELMLLAN_ 0 0 0 REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1 REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1 MULTI-MSMS UPN47_class_I_Rep_2 3 589.3178100585938 2 589.317917 1176.62128 0.29827 0.00017577 1.867 0.0011003 2.1653 0.001276 589.3189637018584 47.073 0.44582 50.424 50.132 50.577 3.3515 45 31 2 0 0 0 0.56033 1 10029 10029 3.5965 0 1 83984 + 13557 18656 8652 8658 16709 16709 0.040035119482354276 IFNEVGIIR 9 Unmodified _IFNEVGIIR_ 0 0 0 Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|22|3|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|22|3|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.81201171875 2 530.811116 1059.60768 0.3461 0.00018372 0.44032 0.00023373 0.78642 0.00041744 530.8113453313188 63.161 0.36335 66.521 66.254 66.617 3.3595 43 26 2 0 0 0 0.37599 1 14877 14877 9.3831 0 1 123160 13558 439 8653 8659 16710 16710 0.08026022231297247 IFNEVGIIR 9 Unmodified _IFNEVGIIR_ 0 0 0 Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|22|3|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|22|3|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.81103515625 2 530.811116 1059.60768 0.21677 0.00011506 0.058091 3.0836E-05 0.27486 0.0001459 530.8111622959432 63.68 0.67463 66.936 66.537 67.212 3.2556 83 57 2 0 0 0 0.30034 1 15069 15069 13.906 0 1 137390 13559 439 8653 8659 16711 16711 0.08026022231297247 IFNKILANQ 9 Unmodified _IFNKILANQ_ 0 0 0 L1MB3_dup6869|chr7:99018175-99018961:-|1.378611908493431|0.1734547114612778|2.99|151.0|11|2|sense;L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|33|3|sense;L1PA14_dup348|chr2:121550028-121553389:+|2.335666051997217|0.0391225550627105|5.9|151.0|89|3|sense;L1PA7_dup6942|chr8:109214407-109219470:-|2.5621848410158155|0.1233702517209148|4.38|151.0|82|2|sense;L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|37|1|sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|129|3|sense;L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|54|2|sense;L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|68|2|sense;L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|5|1|sense;L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|158|3|sense;L1PA5_dup9722|chr14:67273118-67276112:-|1.1488165466344844|0.0988056787118255|3.54|151.0|5|1|sense;L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|132|3|sense;L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|164|3|sense;L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|11|1|sense;L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|153|3|sense;L1PA7_dup4132|chr5:38986641-38988608:-|4.324996898329519|0.3258685723464583|3.73|151.0|36|2|sense;L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|50|2|sense;L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|42|1|sense;L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|159|3|sense L1MB3_dup6869|chr7:99018175-99018961:-|1.378611908493431|0.1734547114612778|2.99|151.0|11|2|sense L1MB3_dup6869|chr7:99018175-99018961:-|1.378611908493431|0.1734547114612778|2.99|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8115844726562 2 530.811116 1059.60768 0.36604 0.0001943 0.16548 8.7839E-05 0.53152 0.00028214 530.8112614412088 63.584 0.68454 66.758 66.456 67.141 3.1741 73 58 2 0 0 0 0.41259 1 15081 15081 7.2892 0 1 121240 13560 10447 8654 8660 16712 16712 0.0802602223127451 IFNKSDKNK 9 Unmodified _IFNKSDKNK_ 0 0 0 L1PREC2_dup1309|chr3:87937954-87939108:+|1.4162844149857283|0.0106195201616548|7.06|131.0|6|1|sense L1PREC2_dup1309|chr3:87937954-87939108:+|1.4162844149857283|0.0106195201616548|7.06|131.0|6|1|sense L1PREC2_dup1309|chr3:87937954-87939108:+|1.4162844149857283|0.0106195201616548|7.06|131.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 547.3047485351562 2 547.303655 1092.59276 NaN NaN NaN NaN NaN NaN NaN 89.471 1 93.3 92.8 93.8 3.8293 0 0 0 0.38784 1 21240 21240 3.5965 0.31518 1 13561 15415 8655 8661 16713 16713 0.050165303632638825 IFNKTKKTI 9 Unmodified _IFNKTKKTI_ 0 0 0 L1P4_dup36|chr1:50938488-50939832:-|2.3975358562385187|0.0225873764258889|6.73|151.0|42|3|sense L1P4_dup36|chr1:50938488-50939832:-|2.3975358562385187|0.0225873764258889|6.73|151.0|42|3|sense L1P4_dup36|chr1:50938488-50939832:-|2.3975358562385187|0.0225873764258889|6.73|151.0|42|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 547.3443603515625 2 546.842416 1091.67028 0.46242 0.00025287 0.16478 9.0111E-05 0.62721 0.00034298 547.3447799817841 94.078 0.17511 97.97 97.873 98.048 3.8914 42 24 2 0 0 0 0.48846 1 22288 22288 1.8442 0 1 211260 13562 13560 8656 8662 16714 16714 0.12811168299458586 IFNNGGAE 8 Unmodified _IFNNGGAE_ 0 0 0 REV__ENSG00000137462|ENST00000642700|TLR2 REV__ENSG00000137462|ENST00000642700|TLR2 MULTI-SECPEP UPN48_class_I_Rep_1 5 411.2109680175781 2 411.193042 820.371532 -0.14421 -5.9299E-05 0.55894 0.00022983 0.41473 0.00017053 411.1932547920799 109.21 0.40282 112.85 112.69 113.09 3.6321 93 49 3 0 0 0 0.72333 1 26509 26509 1.6526 0 1 3450100 + 13563 19230 8657 8663 16715 16715 -0.045839096131885526 IFNRKLCK 8 Unmodified _IFNRKLCK_ 0 0 0 L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|17|1|sense L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|17|1|sense L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 510.9688415527344 2 511.302404 1020.59026 NaN NaN NaN NaN NaN NaN NaN 94.654 1 98.556 98.056 99.056 3.9016 0 0 0 0.40604 1 22430 22430 2.5775 0 1 13564 10070 8658 8664 16716 16716 0.08078403424622138 IFNSEHQVL 9 Unmodified _IFNSEHQVL_ 0 0 0 ENSG00000120337|ENST00000404377|TNFSF18 ENSG00000120337|ENST00000404377|TNFSF18 ENSG00000120337|ENST00000404377|TNFSF18 MULTI-MSMS UPN46_class_I_Rep_3 1 543.783447265625 2 543.782556 1085.55056 0.32446 0.00017643 0.18797 0.00010221 0.51242 0.00027865 543.7825629512275 49.644 0.87021 49.644 49.275 50.145 0 201 93 3 0 0 0 0.36392 1 10362 10362 10.074 0 1 1054900 13565 2323 8659 8665 16717 16717 0.01120554954900399 IFPAPKPAP 9 Unmodified _IFPAPKPAP_ 0 0 0 REV__ENST00000372923.7_1_9:131017032-131017254:+|nuORF REV__ENST00000372923.7_1_9:131017032-131017254:+|nuORF MSMS UPN48_class_I_Rep_1 5 469.2796630859375 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 37.478 1 40.983 40.483 41.483 3.5052 0 0 0 0.39326 1 6378 6378 2.3027 0 1 + 13566 21981 8660 8666 16718 16718 0.07247867145133569 IFPDISAF 8 Unmodified _IFPDISAF_ 0 0 0 ENSG00000141068|ENST00000644974|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1 ENSG00000141068|ENST00000644974|KSR1 ENSG00000141068|ENST00000644974|KSR1 MSMS UPN46_class_I_Rep_3 1 455.23858642578125 2 455.239461 908.46437 NaN NaN NaN NaN NaN NaN NaN 57.034 1 57.034 56.534 57.534 0 0 0 0 0.25471 1 12476 12476 40.449 4.3216 1 13567 3204 8661 8667 16719 16719 0.0064759512019918475 IFPHAYPVV 9 Unmodified _IFPHAYPVV_ 0 0 0 L1M7_dup2504|chr13:50979177-50980132:+|2.304936368091625|0.0441972227266097|5.7|151.0|36|1|anti-sense L1M7_dup2504|chr13:50979177-50980132:+|2.304936368091625|0.0441972227266097|5.7|151.0|36|1|anti-sense L1M7_dup2504|chr13:50979177-50980132:+|2.304936368091625|0.0441972227266097|5.7|151.0|36|1|anti-sense MSMS UPN46_class_I_Rep_3 1 521.7911987304688 2 521.789653 1041.56475 NaN NaN NaN NaN NaN NaN NaN 71.792 1 71.792 71.292 72.292 0 0 0 0 0.39326 1 16560 16560 2.3027 0.24298 1 13568 9235 8662 8668 16720 16720 0.04563252173852561 IFPHDPTI 8 Unmodified _IFPHDPTI_ 0 0 0 L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|10|1|sense L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|10|1|sense L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|10|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 470.3154296875 2 470.25036 938.486168 -0.02851 -1.3407E-05 0.023646 1.1119E-05 -0.0048639 -2.2872E-06 470.25034320037764 50.419 0.89465 54.048 53.59 54.485 3.6285 57 43 2 0 0 0 0.72333 1 11062 11062 13.508 4.1604 1 82634 13569 12365 8663 8669 16721 16721 0.01446399868757453 IFPHDPTI 8 Unmodified _IFPHDPTI_ 0 0 0 L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|10|1|sense L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|10|1|sense L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|10|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 470.25036 938.486168 0.065628 3.0862E-05 -0.279 -0.0001312 -0.21338 -0.00010034 470.2502862955253 51.152 1.0214 54.369 53.656 54.678 3.2163 0.20843 -9.1831E-05 NaN 13.508 75 53 2 NaN NaN NaN NaN 0 NaN NaN 0 67598 13570 12365 8663 8669 0.01446399868757453 IFPHIARY 8 Unmodified _IFPHIARY_ 0 0 0 REV__L1MB8_dup10727|chr11:3989884-3990804:-|1.02189231345965|0.007502683660464|7.09|150.0|41|1|anti-sense REV__L1MB8_dup10727|chr11:3989884-3990804:-|1.02189231345965|0.007502683660464|7.09|150.0|41|1|anti-sense MSMS UPN46_class_I_Rep_3 1 508.786376953125 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 34.471 1 34.471 33.971 34.971 0 0 0 0 0.4032 1 6159 6159 6.3541 0 1 + 13571 26340 8664 8670 16722 16722 0.05317787750948355 IFPIKKRKKKK 11 Unmodified _IFPIKKRKKKK_ 0 0 0 REV__L1ME3B_dup2898|chr6:30208409-30208903:-|1.5788088560496647|0.1545386329034623|3.35|151.0|5|1|sense REV__L1ME3B_dup2898|chr6:30208409-30208903:-|1.5788088560496647|0.1545386329034623|3.35|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 471.7950134277344 3 471.99753 1412.97076 NaN NaN NaN NaN NaN NaN NaN 115.15 1 118.77 118.27 119.27 3.6282 0 0 0 0.38417 1 28007 28007 0.094841 0 1 + 13572 28048 8665 8671 16723 16723 0.2807930002070407 IFPKPPLYTF 10 Unmodified _IFPKPPLYTF_ 0 0 0 nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A MULTI-MSMS UPN48_class_I_Rep_1 5 611.8472900390625 2 611.847167 1221.67978 0.46552 0.00028483 0.3052 0.00018674 0.77072 0.00047156 611.8470098270748 71.328 0.82623 74.794 74.536 75.363 3.466 196 76 4 0 0 0 0.3776 2 16672 16672;16738 21.537 21.537 1 383650 13573 4805 8666 8672 16724;16725 16724 0.07780936584981646 IFPKPPLYTF 10 Unmodified _IFPKPPLYTF_ 0 0 0 nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A MULTI-MSMS UPN48_class_I_Rep_3 7 611.8475341796875 2 611.847167 1221.67978 0.62116 0.00038005 -0.16153 -9.8831E-05 0.45963 0.00028122 611.8468529305201 71.225 0.82914 74.743 74.39 75.219 3.5185 154 78 3 0 0 0 0.3776 1 16544 16544 21.537 21.537 1 252740 13574 4805 8666 8672 16726 16726 0.07780936584981646 IFPKPPLYTF 10 Unmodified _IFPKPPLYTF_ 0 0 0 nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A MULTI-MATCH UPN48_class_I_Rep_2 6 2 611.847167 1221.67978 0.48178 0.00029478 0.26324 0.00016107 0.74503 0.00045584 611.8470868509685 71.237 0.73106 74.787 74.552 75.283 3.5505 0.012395 0.00024903 NaN 21.537 169 74 3 NaN NaN NaN NaN 0 NaN NaN 0 272640 13575 4805 8666 8672 0.07780936584981646 IFPMWVPFL 9 Unmodified _IFPMWVPFL_ 0 0 0 REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|79|1|anti-sense REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|79|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 575.791015625 2 575.311906 1148.60926 0.43483 0.00025016 -2.0335 -0.0011699 -1.5987 -0.00091976 575.3109173000513 59.055 0.48314 62.578 62.331 62.814 3.5231 44 30 2 0 0 0 0.089864 1 12865 12865 20.871 0 1 115880 + 13576 24380 8667 8673 16727 16727 0.040899399956742855 IFPVEFGW 8 Unmodified _IFPVEFGW_ 0 0 0 L1MD1_dup5907|chr17:8926938-8927622:+|1.6088152713592898|0.0135155529629295|6.9|151.0|30|1|anti-sense L1MD1_dup5907|chr17:8926938-8927622:+|1.6088152713592898|0.0135155529629295|6.9|151.0|30|1|anti-sense L1MD1_dup5907|chr17:8926938-8927622:+|1.6088152713592898|0.0135155529629295|6.9|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_3 4 497.7562561035156 2 497.755278 993.496004 NaN NaN NaN NaN NaN NaN NaN 13.806 1 17.176 16.676 17.676 3.3697 0 0 0 0.40625 1 397 397 2.3027 0 1 13577 11967 8668 8674 16728 16728 -0.0010041212585747417 IFQFIFIRR 9 Unmodified _IFQFIFIRR_ 0 0 0 Tigger10_dup815|chr12:118226704-118226907:+|1.4768979158444135|0.0026158161482192|9.14|151.0|9|3|sense Tigger10_dup815|chr12:118226704-118226907:+|1.4768979158444135|0.0026158161482192|9.14|151.0|9|3|sense Tigger10_dup815|chr12:118226704-118226907:+|1.4768979158444135|0.0026158161482192|9.14|151.0|9|3|sense MSMS UPN46_class_I_Rep_3 1 620.3710327148438 2 620.371675 1238.7288 NaN NaN NaN NaN NaN NaN NaN 88.352 1 88.352 87.852 88.852 0 0 0 0 0.4007 1 21214 21214 0.52476 0 1 13578 33222 8669 8675 16729 16729 0.11898269664584404 IFQGITEENF 10 Unmodified _IFQGITEENF_ 0 0 0 L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|52|2|sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|52|2|sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|52|2|sense MSMS UPN48_class_I_Rep_3 7 599.292236328125 2 599.292953 1196.57135 NaN NaN NaN NaN NaN NaN NaN 53.467 1 57.05 56.55 57.55 3.5836 0 0 0 0.53105 1 11147 11147 4.1895 1.691 1 13579 15136 8670 8676 16730 16730 -0.019068994560939245 IFQHYTLY 8 Unmodified _IFQHYTLY_ 0 0 0 REV__MERX_dup193|chr7:130520449-130521122:+|1.849799944136041|0.0678337748665423|4.77|150.0|33|1|anti-sense REV__MERX_dup193|chr7:130520449-130521122:+|1.849799944136041|0.0678337748665423|4.77|150.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 542.775146484375 2 542.776742 1083.53893 0.36722 0.00019932 -2.6115 -0.0014175 -2.2443 -0.0012182 542.7754721421983 56.837 0.23017 60.009 59.867 60.097 3.1721 16 12 2 0 0 0 0.72333 1 13056 13056 14.582 0 1 257020 + 13580 31581 8671 8677 16731 16731 0.0005035793155911961 IFQLKEVV 8 Unmodified _IFQLKEVV_ 0 0 0 nc|ENSG00000185345|O60260-6|PRKN;nc|ENSG00000185345|O60260-7|PRKN;nc|ENSG00000185345|O60260-5|PRKN;nc|ENSG00000185345|O60260-8|PRKN;nc|ENSG00000185345|O60260-2|PRKN;ENSG00000185345|ENST00000366898|PRKN nc|ENSG00000185345|O60260-6|PRKN nc|ENSG00000185345|O60260-6|PRKN MSMS UPN48_class_I_Rep_1 5 488.2962646484375 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 44.766 1 48.279 47.779 48.779 3.5132 0 0 0 0.40625 1 8559 8559 2.3027 0 1 13581 5099 8672 8678 16732 16732 0.0917611897103825 IFRKFMVI 8 Unmodified _IFRKFMVI_ 0 0 0 HAL1_dup19852|chr16:70300831-70301668:-|1.4243948814444902|0.0700140587387962|4.35|151.0|31|1|anti-sense HAL1_dup19852|chr16:70300831-70301668:-|1.4243948814444902|0.0700140587387962|4.35|151.0|31|1|anti-sense HAL1_dup19852|chr16:70300831-70301668:-|1.4243948814444902|0.0700140587387962|4.35|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 527.3167724609375 2 527.317523 1052.62049 NaN NaN NaN NaN NaN NaN NaN 119.23 1 122.85 122.35 123.35 3.6189 0 0 0 0.40738 1 29096 29096 0.79363 0 1 13582 7856 8673 8679 16733 16733 0.09628762089823795 IFRRRWPRRFR 11 Unmodified _IFRRRWPRRFR_ 0 0 0 ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 550.0009155273438 3 549.330676 1644.9702 0.46515 0.00025552 -3.3476 -0.001839 -2.8825 -0.0015834 549.328796543802 107.28 0.10575 110.91 110.84 110.95 3.6299 14 9 2 0 0 0 22.551 1 25853 25853 0.45452 0.45452 1 1595600 13583 7526 8674 8680 16734 16734 0.17351318144210381 IFRRRWPRRFR 11 Unmodified _IFRRRWPRRFR_ 0 0 0 ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.32861328125 3 549.330676 1644.9702 0.48927 0.00026877 -3.0173 -0.0016575 -2.528 -0.0013887 549.3289149783946 107.24 0.17728 110.92 110.88 111.06 3.6783 17 13 2 0 0 0 0.68081 1 25340 25340 0.45452 0.45452 1 1377700 13584 7526 8674 8680 16735 16735 0.17351318144210381 IFRRRWPRRFR 11 Unmodified _IFRRRWPRRFR_ 0 0 0 ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF ENST00000575234.1_1_16:3355499-3356027:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 550.0008544921875 3 549.330676 1644.9702 0.4288 0.00023555 -2.6159 -0.001437 -2.1871 -0.0012014 549.3292388146798 107.25 0.12715 110.94 110.88 111.01 3.6899 11 8 2 0 0 0 22.551 1 25287 25287 0.08335 0.08335 1 1094100 13585 7526 8674 8680 16736 16736 0.17351318144210381 IFSCIYCP 8 Unmodified _IFSCIYCP_ 0 0 0 L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|52|2|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|52|2|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_2 6 473.21441650390625 2 473.214075 944.413596 NaN NaN NaN NaN NaN NaN NaN 42.947 1 46.705 46.205 47.205 3.7579 0 0 0 0.39624 1 8012 8012 9.3474 0 1 13586 9805 8675 8681 16737 16737 -0.06083393520680147 IFSCIYCP 8 Unmodified _IFSCIYCP_ 0 0 0 L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|52|2|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|52|2|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_3 7 473.2143249511719 2 473.214075 944.413596 NaN NaN NaN NaN NaN NaN NaN 43.07 1 46.711 46.211 47.211 3.6415 0 0 0 0.36148 1 7971 7971 19.439 0 1 13587 9805 8675 8681 16738 16738 -0.06083393520680147 IFSFEEVQF 9 Unmodified _IFSFEEVQF_ 0 0 0 L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.2793579101562 2 573.279315 1144.54408 0.44712 0.00025633 0.18529 0.00010622 0.63241 0.00036255 573.2792873207329 70.701 0.50375 74.16 73.936 74.44 3.4598 84 54 3 0 0 0 0.10817 7 16485 16439;16447;16481;16485;16500;16531;16534 32.305 13.049 1 186070 13588 8572 8676 8682 16739;16740;16741;16742;16743;16744;16745 16742 -0.022413829964762044 IFSFEEVQF 9 Unmodified _IFSFEEVQF_ 0 0 0 L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|127|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.2796020507812 2 573.279315 1144.54408 0.52824 0.00030283 -0.085012 -4.8736E-05 0.44323 0.00025409 573.2792457192775 70.475 0.59176 73.993 73.734 74.326 3.5185 100 59 2 0 0 0 0.074367 3 16307 16271;16307;16350 39.957 11.47 1 245880 13589 8572 8676 8682 16746;16747;16748 16747 -0.022413829964762044 IFSFLRMYS 9 Unmodified _IFSFLRMYS_ 0 0 0 REV__L1ME1_dup26561|chr16:24081901-24083849:+|2.253668271481509|0.0081995452779647|8.1|151.0|131|3|anti-sense REV__L1ME1_dup26561|chr16:24081901-24083849:+|2.253668271481509|0.0081995452779647|8.1|151.0|131|3|anti-sense MSMS UPN48_class_I_Rep_3 7 582.2998046875 2 582.299527 1162.5845 NaN NaN NaN NaN NaN NaN NaN 66.437 1 69.945 69.445 70.445 3.5077 0 0 0 0.38916 1 15089 15089 3.2813 0 1 + 13590 27711 8677 8683 16749 16749 0.009712601223100137 IFSFTNLV 8 Unmodified _IFSFTNLV_ 0 0 0 REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|232|1|anti-sense REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|232|1|anti-sense MSMS UPN46_class_I_Rep_3 1 470.7602233886719 2 470.760561 939.506569 NaN NaN NaN NaN NaN NaN NaN 56.213 1 56.213 55.713 56.713 0 0 0 0 0.33644 1 12250 12250 25.399 0 1 + 13591 29838 8678 8684 16750 16750 0.03439570528553304 IFSIFANLISK 11 Unmodified _IFSIFANLISK_ 0 0 0 L1M5_dup9592|chr3:41217450-41217749:-|3.822856476587871|0.2114660457712998|4.18|151.0|20|2|anti-sense L1M5_dup9592|chr3:41217450-41217749:-|3.822856476587871|0.2114660457712998|4.18|151.0|20|2|anti-sense L1M5_dup9592|chr3:41217450-41217749:-|3.822856476587871|0.2114660457712998|4.18|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_2 3 626.8700561523438 2 626.868631 1251.72271 NaN NaN NaN NaN NaN NaN NaN 60.583 1 63.849 63.349 64.349 3.2654 0 0 0 0.38417 1 14186 14186 2.7352 0.23671 1 13592 9212 8679 8685 16751 16751 0.10691706642387544 IFSKESIFF 9 Unmodified _IFSKESIFF_ 0 0 0 Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|96|1|anti-sense Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|96|1|anti-sense Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|96|1|anti-sense MSMS UPN48_class_I_Rep_1 5 559.300048828125 2 559.30005 1116.58555 NaN NaN NaN NaN NaN NaN NaN 68.939 1 72.394 71.894 72.894 3.4548 0 0 0 0.052575 1 15955 15955 36.044 7.5574 1 13593 32990 8680 8686 16752 16752 0.03191797762860915 IFSKYRYY 8 Unmodified _IFSKYRYY_ 0 0 0 REV__L1ME3_dup8044|chr17:64812812-64813736:+|1.0482193151358743|0.3697137337619255|1.5|151.0|61|3|anti-sense REV__L1ME3_dup8044|chr17:64812812-64813736:+|1.0482193151358743|0.3697137337619255|1.5|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2957763671875 2 570.297842 1138.58113 NaN NaN NaN NaN NaN NaN NaN 52.499 1 56.058 55.558 56.558 3.5585 0 0 0 0.36705 1 11686 11686 18.135 5.6034 1 + 13594 27966 8681 8687 16753 16753 0.01738333339926612 IFSKYRYY 8 Unmodified _IFSKYRYY_ 0 0 0 REV__L1ME3_dup8044|chr17:64812812-64813736:+|1.0482193151358743|0.3697137337619255|1.5|151.0|61|3|anti-sense REV__L1ME3_dup8044|chr17:64812812-64813736:+|1.0482193151358743|0.3697137337619255|1.5|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2996215820312 2 570.297842 1138.58113 NaN NaN NaN NaN NaN NaN NaN 52.69 1 56.249 55.749 56.749 3.5585 0 0 0 0.388 1 11745 11745 12.532 1.7076 1 + 13595 27966 8681 8687 16754 16754 0.01738333339926612 IFSLGKEF 8 Unmodified _IFSLGKEF_ 0 0 0 L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|57|1|anti-sense L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|57|1|anti-sense L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|57|1|anti-sense MSMS UPN46_class_I_Rep_3 1 470.76068115234375 2 470.760561 939.506569 NaN NaN NaN NaN NaN NaN NaN 56.334 1 56.334 55.834 56.834 0 0 0 0 0.29893 1 12283 12283 32.305 9.1571 1 13596 12322 8682 8688 16755 16755 0.03439570528564673 IFSRDEVL 8 Unmodified _IFSRDEVL_ 0 0 0 AluSz_dup62601|chr11:47373366-47373666:+|2.000746003647164|0.0455407686811438|5.46|151.0|20|2|anti-sense;AluSz6_dup1294|chr1:44541154-44541451:+|2.472748343805678|0.0015820582235174|10.61|151.0|13|1|anti-sense;AluSz_dup7011|chr1:198920902-198921212:-|1.0697020473747896|0.0030993568825933|8.43|151.0|22|3|anti-sense;AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|17|1|anti-sense;AluJb_dup58026|chr8:130002817-130002987:+|1.055772523576923|0.0062199700615767|7.41|151.0|8|1|anti-sense;AluSx1_dup48524|chr8:27344891-27345165:+|1.4877814259731246|0.0148176386537543|6.65|151.0|12|1|anti-sense;AluSz6_dup38719|chr16:30244854-30245148:-|2.628206519574406|0.1397285508091334|4.23|151.0|16|2|anti-sense;AluSz6_dup38686|chr16:29504873-29505167:-|3.0523817817859835|0.4225548916998756|2.85|151.0|16|2|anti-sense;AluSz6_dup38456|chr16:22514227-22514524:+|2.4725567982270227|0.3304118965087276|2.9|151.0|17|2|anti-sense;AluSx1_dup78374|chr12:123421665-123421967:-|2.0587781151886357|0.1408337409741141|3.87|151.0|12|1|anti-sense;AluSz_dup77603|chr15:49891317-49891621:-|1.543134742254118|0.0219138954703089|6.14|151.0|16|1|anti-sense;AluSx_dup61581|chrX:119653787-119654094:+|1.0227930022187388|0.0217821389961998|5.55|151.0|18|3|anti-sense AluSz_dup62601|chr11:47373366-47373666:+|2.000746003647164|0.0455407686811438|5.46|151.0|20|2|anti-sense AluSz_dup62601|chr11:47373366-47373666:+|2.000746003647164|0.0455407686811438|5.46|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.7676696777344 2 489.766374 977.518196 -0.28377 -0.00013898 -1.1366 -0.00055666 -1.4204 -0.00069565 489.7658413783169 34.424 0.54499 38.11 37.841 38.386 3.6859 55 42 2 0 0 0 0.82752 1 6140 6140 24.674 0 1 141690 13597 57 8683 8689 16756 16756 0.028537675519032746 IFSSVYLSGF 10 Unmodified _IFSSVYLSGF_ 0 0 0 REV__L1MEf_dup8324|chr12:11865755-11866510:-|3.4130132623426577|0.0643576927084745|5.73|151.0|53|3|anti-sense REV__L1MEf_dup8324|chr12:11865755-11866510:-|3.4130132623426577|0.0643576927084745|5.73|151.0|53|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 559.7612915039062 2 560.289682 1118.56481 0.47981 0.00026883 -0.32886 -0.00018426 0.15095 8.4576E-05 560.7908715455019 68.356 0.29523 71.865 71.803 72.098 3.5094 35 25 2 0 0 0 0.84575 1 15685 15685 15.847 6.4997 1 67555 + 13598 28693 8684 8690 16757 16757 0.010272073831856687 IFSVCWMLL 9 Unmodified _IFSVCWMLL_ 0 0 0 REV__L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|46|2|anti-sense REV__L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|46|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2865600585938 2 556.287574 1110.56059 0.42221 0.00023487 0.88064 0.00048989 1.3028 0.00072476 556.2880412144892 58.896 1.2878 62.314 61.903 63.191 3.4171 243 85 5 0 0 0 0.40174 1 13899 13899 7.9102 0 1 1495300 + 13599 25372 8685 8691 16758 16758 0.009737033642750248 IFSVCWMLL 9 Unmodified _IFSVCWMLL_ 0 0 0 REV__L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|46|2|anti-sense REV__L1MA5_dup2316|chr8:130101872-130102701:-|3.651867197537233|0.1324247149097195|4.79|151.0|46|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2847900390625 2 556.287574 1110.56059 0.50965 0.00028351 0.88563 0.00049267 1.3953 0.00077618 556.2879561380222 59.258 1.3933 62.531 62.057 63.45 3.2731 214 89 3 0 0 0 0.40174 1 14044 14044 7.9102 0 1 1213100 + 13600 25372 8685 8691 16759 16759 0.009737033642750248 IFSVFTVGTF 10 Unmodified _IFSVFTVGTF_ 0 0 0 L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|34|1|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|34|1|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.802734375 2 559.30005 1116.58555 0.4767 0.00026662 0.66051 0.00036942 1.1372 0.00063604 559.8023952719435 68.591 0.45357 72.1 71.861 72.315 3.5094 58 35 2 0 0 0 0.35076 1 15732 15732 24.021 1.2843 1 278110 13601 10325 8686 8692 16760 16760 0.03191797762860915 IFSYNENPGQ 10 Unmodified _IFSYNENPGQ_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-MSMS UPN47_class_I_Rep_2 3 584.7669677734375 2 584.767103 1167.51965 0.41072 0.00024018 -0.11644 -6.8092E-05 0.29428 0.00017209 584.7669908269874 70.328 0.7445 73.61 73.29 74.035 3.2828 178 70 3 0 0 0 0.54822 1 17230 17230 5.7319 5.7319 1 518680 + 13602 19309 8687 8693 16761 16761 -0.057406431500112376 IFTARLYYF 9 Unmodified _IFTARLYYF_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MULTI-MSMS UPN48_class_I_Rep_1 5 597.3225708007812 2 597.321317 1192.62808 0.45754 0.0002733 0.25708 0.00015356 0.71462 0.00042686 597.3212855298709 71.525 0.20238 74.991 74.889 75.091 3.466 23 16 2 0 0 0 0.21527 1 16722 16722 19.257 1.1106 1 103790 13603 2589 8688 8694 16762 16762 0.03947192891064333 IFTARLYYF 9 Unmodified _IFTARLYYF_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MULTI-MSMS UPN48_class_I_Rep_2 6 597.3223266601562 2 597.321317 1192.62808 0.47691 0.00028487 -0.3815 -0.00022788 0.095416 5.6994E-05 597.3212571734592 71.349 0.52464 74.9 74.637 75.162 3.5505 58 52 2 0 0 0 0.13244 1 16619 16619 27.629 9.4825 1 156220 13604 2589 8688 8694 16763 16763 0.03947192891064333 IFTARLYYF 9 Unmodified _IFTARLYYF_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MSMS UPN48_class_I_Rep_3 7 597.3214111328125 2 597.321317 1192.62808 NaN NaN NaN NaN NaN NaN NaN 71.465 1 74.991 74.491 75.491 3.5266 0 0 0 0.34878 1 16598 16598 8.1555 1.9497 1 13605 2589 8688 8694 16764 16764 0.03947192891064333 IFTCRRMSL 9 Unmodified _IFTCRRMSL_ 0 0 0 L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|42|2|sense L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|42|2|sense L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|42|2|sense MSMS UPN47_class_I_Rep_3 4 563.3190307617188 2 563.796629 1125.5787 NaN NaN NaN NaN NaN NaN NaN 56.896 1 60.068 59.568 60.568 3.1721 0 0 0 0.39518 1 13112 13112 1.8442 0.19162 1 13606 10934 8689 8695 16765 16765 0.020938383389875526 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS UPN48_class_I_Rep_1 5 543.2852172851562 2 543.284931 1084.55531 0.55194 0.00029986 0.0022332 1.2133E-06 0.55417 0.00030107 543.2848703231022 59.265 1.1227 62.745 62.378 63.501 3.4801 215 77 4 0 0 0 0.0068267 5 13028 13028;13068;13108;13151;13221 125.04 48.213 1 2034200 13607 1188 8690 8696 16766;16767;16768;16769;16770 16766 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS UPN48_class_I_Rep_2 6 543.2852783203125 2 543.284931 1084.55531 0.56506 0.00030699 0.014729 8.0019E-06 0.57979 0.00031499 543.2848716057637 59.365 1.1321 62.852 62.343 63.475 3.4868 219 81 4 0 0 0 0.0039863 5 12951 12951;12994;13033;13114;13162 148.27 44.915 1 2179000 13608 1188 8690 8696 16771;16772;16773;16774;16775 16771 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS UPN48_class_I_Rep_3 7 543.2852172851562 2 543.284931 1084.55531 0.46849 0.00025452 0.077728 4.2229E-05 0.54622 0.00029675 543.2849080601937 59.134 1.012 62.657 62.254 63.266 3.5231 209 72 4 0 0 0 0.0039863 7 12864 12826;12864;12903;12943;12984;13036;13043 148.27 44.915 1 1910800 13609 1188 8690 8696 16776;16777;16778;16779;16780;16781;16782 16777 0.016414390976706272 IFTGKRMKL 9 Unmodified _IFTGKRMKL_ 0 0 0 L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|7|1|sense;L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|14|1|sense L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|7|1|sense L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 547.3300170898438 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 73.003 1 76.567 76.067 77.067 3.5645 0 0 0 0.38299 1 17120 17120 4.756 0.42677 1 13610 10211 8691 8697 16783 16783 0.10515245630199388 IFTIHVLRER 10 Unmodified _IFTIHVLRER_ 0 0 0 REV__MER44A_dup287|chr2:126665235-126665490:+|1.113764223669975|0.0213691951339499|5.7|151.0|1|1|sense REV__MER44A_dup287|chr2:126665235-126665490:+|1.113764223669975|0.0213691951339499|5.7|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 642.3816528320312 2 642.382771 1282.75099 0.57913 0.00037202 -1.1194 -0.00071907 -0.54026 -0.00034705 642.3818185855682 107.86 0.10625 111.53 111.49 111.59 3.6724 10 5 2 0 0 0 0.55148 1 26460 26460 5.2969 0.39987 1 1252900 + 13611 31311 8692 8698 16784 16784 0.12092449342367217 IFTIHVLRER 10 Unmodified _IFTIHVLRER_ 0 0 0 REV__MER44A_dup287|chr2:126665235-126665490:+|1.113764223669975|0.0213691951339499|5.7|151.0|1|1|sense REV__MER44A_dup287|chr2:126665235-126665490:+|1.113764223669975|0.0213691951339499|5.7|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 642.3839721679688 2 642.382771 1282.75099 NaN NaN NaN NaN NaN NaN NaN 86.999 1 90.44 89.94 90.94 3.4407 0 0 0 0.53105 1 21631 21631 1.6526 0.17072 1 + 13612 31311 8692 8698 16785 16785 0.12092449342367217 IFTMEHFW 8 Unmodified _IFTMEHFW_ 0 0 0 L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|45|3|anti-sense L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|45|3|anti-sense L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|45|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 556.3273315429688 2 555.757495 1109.50044 0.51696 0.0002873 -2.6946 -0.0014975 -2.1776 -0.0012102 555.7561329602329 53.977 0.21843 57.296 57.231 57.45 3.3187 13 12 2 0 0 0 0.72333 1 12174 12174 2.5775 0.51773 1 41297 13613 11811 8693 8699 16786 16786 -0.049932709745917236 IFTPKPTLF 9 Unmodified _IFTPKPTLF_ 0 0 0 ENST00000489922.5_1_13:73544805-73590054:+|nuORF;ENST00000469712.1_1_13:73543850-73590054:+|nuORF;nc|ENSG00000083535|Q8WXW3-2|PIBF1;nc|ENSG00000083535|Q8WXW3-4|PIBF1;ENSG00000083535|ENST00000326291|PIBF1 ENST00000489922.5_1_13:73544805-73590054:+|nuORF ENST00000489922.5_1_13:73544805-73590054:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 532.3134155273438 2 532.312961 1062.61137 0.4522 0.00024071 0.66018 0.00035142 1.1124 0.00059213 532.3133314520153 63.884 0.47418 67.342 67.092 67.567 3.4578 67 34 3 0 0 0 0.074399 1 14435 14435 39.95 3.8227 1 135260 13614 1242 8694 8700 16787 16787 0.08256692005124933 IFTPKPTLF 9 Unmodified _IFTPKPTLF_ 0 0 0 ENST00000489922.5_1_13:73544805-73590054:+|nuORF;ENST00000469712.1_1_13:73543850-73590054:+|nuORF;nc|ENSG00000083535|Q8WXW3-2|PIBF1;nc|ENSG00000083535|Q8WXW3-4|PIBF1;ENSG00000083535|ENST00000326291|PIBF1 ENST00000489922.5_1_13:73544805-73590054:+|nuORF ENST00000489922.5_1_13:73544805-73590054:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 532.3134155273438 2 532.312961 1062.61137 0.47224 0.00025138 0.2476 0.0001318 0.71984 0.00038318 532.3131583855416 63.792 0.47979 67.266 66.979 67.459 3.4743 53 34 2 0 0 0 0.081756 1 14368 14368 38.176 0.20157 1 140550 13615 1242 8694 8700 16788 16788 0.08256692005124933 IFTPKPTLF 9 Unmodified _IFTPKPTLF_ 0 0 0 ENST00000489922.5_1_13:73544805-73590054:+|nuORF;ENST00000469712.1_1_13:73543850-73590054:+|nuORF;nc|ENSG00000083535|Q8WXW3-2|PIBF1;nc|ENSG00000083535|Q8WXW3-4|PIBF1;ENSG00000083535|ENST00000326291|PIBF1 ENST00000489922.5_1_13:73544805-73590054:+|nuORF ENST00000489922.5_1_13:73544805-73590054:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 532.3137817382812 2 532.312961 1062.61137 0.53574 0.00028518 0.52463 0.00027927 1.0604 0.00056445 532.814515980266 63.651 0.46851 67.16 66.908 67.376 3.5091 62 35 2 0 0 0 0.10301 1 14191 14191 18.146 2.2992 1 166350 13616 1242 8694 8700 16789 16789 0.08256692005124933 IFTRQDIQI 9 Unmodified _IFTRQDIQI_ 0 0 0 L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|44|2|sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|44|2|sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3189086914062 2 567.319306 1132.62406 0.41218 0.00023384 -0.19113 -0.00010843 0.22105 0.00012541 567.3190481444375 46.123 0.7818 49.642 49.244 50.026 3.5192 67 52 2 0 0 0 0.45441 1 9077 9077 4.897 0 1 185900 13617 11050 8695 8701 16790 16790 0.06305103397380662 IFTRRKFQLKK 11 Unmodified _IFTRRKFQLKK_ 0 0 0 Tigger1_dup2158|chr3:37394566-37395981:+|1.3128678976606742|0.2140127243868888|2.62|151.0|101|3|anti-sense Tigger1_dup2158|chr3:37394566-37395981:+|1.3128678976606742|0.2140127243868888|2.62|151.0|101|3|anti-sense Tigger1_dup2158|chr3:37394566-37395981:+|1.3128678976606742|0.2140127243868888|2.62|151.0|101|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.9768371582031 3 488.976906 1463.90889 NaN NaN NaN NaN NaN NaN NaN 63.609 1 67.084 66.584 67.584 3.4743 0 0 0 0.38417 1 14316 14316 0.094841 0 1 13618 33052 8696 8702 16791 16791 0.1954894860159584 IFTVRRGCHK 10 Unmodified _IFTVRRGCHK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|17|1|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 405.79864501953125 3 406.229237 1215.66588 NaN NaN NaN NaN NaN NaN NaN 85.573 1 85.573 85.073 86.073 0 0 0 0 0.53105 1 20421 20421 0.69767 0.07084 1 + 13619 32670 8697 8703 16792 16792 0.06667380604903883 IFVCCMCDMH 10 Unmodified _IFVCCMCDMH_ 0 0 0 MER41-int_dup1233|chr12:24856758-24859339:+|1.0762494540455585|0.1921256214041531|2.49|148.0|17|1|sense MER41-int_dup1233|chr12:24856758-24859339:+|1.0762494540455585|0.1921256214041531|2.49|148.0|17|1|sense MER41-int_dup1233|chr12:24856758-24859339:+|1.0762494540455585|0.1921256214041531|2.49|148.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 601.2174682617188 2 601.220193 1200.42583 NaN NaN NaN NaN NaN NaN NaN 116.96 1 120.59 120.09 121.09 3.6254 0 0 0 0.53105 1 28497 28497 0.45834 0.10771 1 13620 15951 8698 8704 16793 16793 -0.1663618443581072 IFVDWLRL 8 Unmodified _IFVDWLRL_ 0 0 0 REV__ENSG00000214946|ENST00000437605|TBC1D26 REV__ENSG00000214946|ENST00000437605|TBC1D26 MSMS UPN46_class_I_Rep_3 1 531.4495849609375 2 531.310752 1060.60695 NaN NaN NaN NaN NaN NaN NaN 69.921 1 69.921 69.421 70.421 0 0 0 0 0.40404 1 16045 16045 5.2307 0 1 + 13621 21270 8699 8705 16794 16794 0.07907227582222731 IFVFLDML 8 Unmodified _IFVFLDML_ 0 0 0 REV__L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|146|3|anti-sense REV__L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|146|3|anti-sense MSMS UPN47_class_I_Rep_1 2 498.8018798828125 2 499.274989 996.535426 NaN NaN NaN NaN NaN NaN NaN 55.78 1 59.258 58.758 59.758 3.4785 0 0 0 0.4032 1 12688 12688 6.3541 0 1 + 13622 29336 8700 8706 16795 16795 0.03701971833334028 IFVFVAFTF 9 Unmodified _IFVFVAFTF_ 0 0 0 L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|54|3|anti-sense;L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|157|2|anti-sense L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|54|3|anti-sense L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.80322265625 2 545.802229 1089.5899 NaN NaN NaN NaN NaN NaN NaN 67.524 1 70.885 70.385 71.385 3.3611 0 0 0 0.39428 1 16242 16242 2.0598 0.21551 1 13623 10052 8701 8707 16796 16796 0.048693069764112806 IFVGAESLFL 10 Unmodified _IFVGAESLFL_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1 ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 548.3077392578125 2 548.307875 1094.6012 0.61382 0.00033656 -0.4612 -0.00025288 0.15262 8.3683E-05 548.3075976360682 96.236 0.48809 99.715 99.282 99.77 3.4791 109 71 2 0 0 0 0.23621 2 23617 23591;23617 39.957 5.8549 1 374200 13624 1633 8702 8708 16797;16798 16798 0.05768084279884533 IFVGAESLFL 10 Unmodified _IFVGAESLFL_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1 ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MSMS UPN47_class_I_Rep_3 4 548.3070678710938 2 548.307875 1094.6012 NaN NaN NaN NaN NaN NaN NaN 96.136 1 99.55 99.05 100.05 3.414 0 0 0 0.53105 1 23864 23864 34.102 1.797 1 13625 1633 8702 8708 16799 16799 0.05768084279884533 IFVGGLQNVR 10 Unmodified _IFVGGLQNVR_ 0 0 0 REV__nc|ENSG00000135903|P23760-3|PAX3 REV__nc|ENSG00000135903|P23760-3|PAX3 MSMS UPN47_class_I_Rep_1 2 551.8214111328125 2 551.822015 1101.62948 NaN NaN NaN NaN NaN NaN NaN 37.27 1 40.936 40.436 41.436 3.6652 0 0 0 0.53105 1 7054 7054 1.4819 0.68827 1 + 13626 17564 8703 8709 16800 16800 0.08272826979828096 IFVVILYWK 9 Unmodified _IFVVILYWK_ 0 0 0 REV__L1MA8_dup2506|chr4:123098239-123099518:-|1.1887621039404823|0.2305355955039833|2.37|151.0|88|3|anti-sense REV__L1MA8_dup2506|chr4:123098239-123099518:-|1.1887621039404823|0.2305355955039833|2.37|151.0|88|3|anti-sense MSMS UPN48_class_I_Rep_2 6 590.8590087890625 2 590.860078 1179.7056 NaN NaN NaN NaN NaN NaN NaN 50.303 1 53.998 53.498 54.498 3.6946 0 0 0 0.40038 1 10256 10256 0.6015 0 1 + 13627 25544 8704 8710 16801 16801 0.1229383082725235 IFVVLKSLC 9 Unmodified _IFVVLKSLC_ 0 0 0 L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|168|3|anti-sense L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|168|3|anti-sense L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|168|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 510.77154541015625 2 511.309364 1020.60417 0.16039 8.2009E-05 -0.95278 -0.00048717 -0.79239 -0.00040516 511.81089522817956 77.644 0.038742 80.976 80.961 80.999 3.3315 5 3 2 0 0 0 0.12281 1 19270 19270 1.8442 0 1 28176 13628 13855 8705 8711 16802 16802 0.09469636133042059 IFVYIFMR 8 Unmodified _IFVYIFMR_ 0 0 0 L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|81|1|anti-sense L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|81|1|anti-sense L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|81|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.8016357421875 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 20.559 1 24.104 23.604 24.604 3.5454 0 0 0 0.40738 1 1752 1752 0.79363 0 1 13629 10794 8706 8712 16803 16803 0.0485676933585637 IFWDHHHI 8 Unmodified _IFWDHHHI_ 0 0 0 Tigger3a_dup3860|chr12:31299734-31300061:-|1.149232063320943|0.1677564179345516|2.78|151.0|20|2|anti-sense Tigger3a_dup3860|chr12:31299734-31300061:-|1.149232063320943|0.1677564179345516|2.78|151.0|20|2|anti-sense Tigger3a_dup3860|chr12:31299734-31300061:-|1.149232063320943|0.1677564179345516|2.78|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.31982421875 2 552.772326 1103.5301 NaN NaN NaN NaN NaN NaN NaN 41.8 1 45.166 44.666 45.666 3.3655 0 0 0 0.40581 1 8460 8460 2.8892 1.2366 1 13630 33360 8707 8713 16804 16804 -0.017525709142546475 IFWKEFFD 8 Unmodified _IFWKEFFD_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|133|2|anti-sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|133|2|anti-sense MSMS UPN47_class_I_Rep_3 4 566.2796630859375 2 566.279118 1130.54368 NaN NaN NaN NaN NaN NaN NaN 40.439 1 43.676 43.176 44.176 3.2372 0 0 0 0.40746 1 8099 8099 0.69038 0 1 + 13631 28989 8708 8714 16805 16805 -0.01636757925666643 IFWMPVFY 8 Unmodified _IFWMPVFY_ 0 0 0 L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|169|3|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|169|3|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|169|3|anti-sense MSMS UPN46_class_I_Rep_3 1 551.7728271484375 2 551.775157 1101.53576 NaN NaN NaN NaN NaN NaN NaN 29.603 1 29.603 29.103 30.103 0 0 0 0 0.40581 1 4710 4710 2.8892 0 1 13632 11234 8709 8715 16806 16806 -0.010946084467832407 IFWSAVVVM 9 Unmodified _IFWSAVVVM_ 0 0 0 REV__nc|ENSG00000169344|P07911-2|UMOD REV__nc|ENSG00000169344|P07911-2|UMOD MSMS UPN48_class_I_Rep_2 6 526.2870483398438 2 526.285889 1050.55722 NaN NaN NaN NaN NaN NaN NaN 28.084 1 31.715 31.215 32.215 3.6311 0 0 0 0.39428 1 3818 3818 2.0598 0 1 + 13633 20310 8710 8716 16807 16807 0.03396776581917038 IFWSSIWF 8 Unmodified _IFWSSIWF_ 0 0 0 REV__L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|101|2|anti-sense REV__L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|101|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.28515625 2 543.276378 1084.5382 NaN NaN NaN NaN NaN NaN NaN 59.199 1 62.679 62.179 63.179 3.4801 0 0 0 0.24633 1 12987 12987 42.968 0 1 + 13634 24762 8711 8717 16808 16808 -0.0006843671749265923 IFYDKNVDH 9 Unmodified _IFYDKNVDH_ 0 0 0 Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 575.7799072265625 2 575.780013 1149.54547 0.18094 0.00010418 -0.088604 -5.1016E-05 0.092336 5.3165E-05 575.7798918875096 48.52 0.53257 52.202 51.953 52.486 3.6819 55 32 2 0 0 0 0.16559 1 10491 10491 24.021 0 1 129580 13635 15493 8712 8718 16809 16809 -0.023317489077271603 IFYDKNVDH 9 Unmodified _IFYDKNVDH_ 0 0 0 Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 575.780013 1149.54547 0.38477 0.00022154 -0.44006 -0.00025338 -0.055292 -3.1836E-05 575.7797915640726 48.935 0.65779 52.282 51.931 52.589 3.3465 0.049467 -0.0001847 NaN 24.021 66 40 2 NaN NaN NaN NaN 0 NaN NaN 0 114500 13636 15493 8712 8718 -0.023317489077271603 IFYDKNVDH 9 Unmodified _IFYDKNVDH_ 0 0 0 Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense Looper_dup524|chr22:46938886-46939802:+|1.5208247136368174|0.0514767495410691|4.88|150.0|13|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 575.780013 1149.54547 0.43079 0.00024804 -0.1386 -7.9803E-05 0.29219 0.00016824 575.7797838642732 48.979 0.6077 52.213 51.902 52.509 3.2345 -0.018861 0.00016244 NaN 24.021 62 36 2 NaN NaN NaN NaN 0 NaN NaN 0 106430 13637 15493 8712 8718 -0.023317489077271603 IFYDSTYTR 9 Unmodified _IFYDSTYTR_ 0 0 0 L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|24|2|sense L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|24|2|sense L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 583.2821655273438 2 583.279846 1164.54514 NaN NaN NaN NaN NaN NaN NaN 41.641 1 41.641 41.141 42.141 0 0 0 0 0.39036 1 8180 8180 2.9952 1.151 1 13638 10530 8713 8719 16810 16810 -0.03055168627565763 IFYFLMFY 8 Unmodified _IFYFLMFY_ 0 0 0 REV__L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|237|1|anti-sense REV__L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|237|1|anti-sense MSMS UPN47_class_I_Rep_3 4 572.2658081054688 2 572.282815 1142.55108 NaN NaN NaN NaN NaN NaN NaN 47.043 1 50.287 49.787 50.787 3.2439 0 0 0 0.39167 1 10118 10118 11.114 0 1 + 13639 29163 8714 8720 16811 16811 -0.014497416495714788 IFYFNLLQ 8 Unmodified _IFYFNLLQ_ 0 0 0 REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|67|1|anti-sense REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.2693481445312 2 529.289485 1056.56442 NaN NaN NaN NaN NaN NaN NaN 61.341 1 64.722 64.222 65.222 3.3815 0 0 0 0.38221 1 14378 14378 14.582 0 1 + 13640 30591 8715 8721 16812 16812 0.03839832453991221 IFYFTDIYP 9 Unmodified _IFYFTDIYP_ 0 0 0 Cheshire_dup876|chr15:61884489-61886709:-|1.049266990824102|0.0905169413471188|3.54|149.0|30|2|sense Cheshire_dup876|chr15:61884489-61886709:-|1.049266990824102|0.0905169413471188|3.54|149.0|30|2|sense Cheshire_dup876|chr15:61884489-61886709:-|1.049266990824102|0.0905169413471188|3.54|149.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 589.7929077148438 2 589.792058 1177.56956 NaN NaN NaN NaN NaN NaN NaN 50.676 1 54.201 53.701 54.701 3.5246 0 0 0 0.39428 1 10374 10374 2.0598 0.21551 1 13641 564 8716 8722 16813 16813 -0.012119084740334074 IFYNSILTF 9 Unmodified _IFYNSILTF_ 0 0 0 REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 559.802490234375 2 559.30005 1116.58555 0.4767 0.00026662 0.66051 0.00036942 1.1372 0.00063604 559.8023952719435 68.591 0.45357 72.1 71.861 72.315 3.5094 58 35 2 0 0 0 0.13244 1 15750 15750 27.629 0 1 278110 + 13642 21466 8717 8723 16814 16814 0.03191797762860915 IFYNSILTF 9 Unmodified _IFYNSILTF_ 0 0 0 REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 559.30005 1116.58555 0.44063 0.00024645 0.17067 9.5457E-05 0.61131 0.0003419 559.2999000066335 68.51 0.074402 71.708 71.65 71.724 3.1977 -0.19622 -0.00047156 NaN 27.629 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 32375 + 13643 21466 8717 8723 0.03191797762860915 IFYRLHTC 8 Unmodified _IFYRLHTC_ 0 0 0 REV__L1ME4a_dup16418|chr8:37865659-37865948:-|2.0575129896721567|0.1580100786519616|3.7|151.0|24|3|anti-sense REV__L1ME4a_dup16418|chr8:37865659-37865948:-|2.0575129896721567|0.1580100786519616|3.7|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7722778320312 2 526.770937 1051.52732 NaN NaN NaN NaN NaN NaN NaN 113.64 1 117.15 116.65 117.65 3.5109 0 0 0 0.40738 1 27647 27647 0.79363 0 1 + 13644 28217 8718 8724 16815 16815 0.0036183763659209944 IFYRLQWFFFK 11 Unmodified _IFYRLQWFFFK_ 0 0 0 REV__L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|307|3|anti-sense REV__L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|307|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 532.2908325195312 3 532.29049 1593.84964 0.32611 0.00017358 -1.1801 -0.00062814 -0.85396 -0.00045456 532.2902700134894 46.168 0.74886 49.687 49.421 50.17 3.5192 103 48 3 0 0 0 0.68491 1 8960 8960 0.08335 0.010087 1 336500 + 13645 30399 8719 8725 16816 16816 0.07647052587390135 IFYTFNVTI 9 Unmodified _IFYTFNVTI_ 0 0 0 REV__L1MEc_dup13928|chr12:110664485-110665275:+|1.0854713004767451|0.0986352515061244|3.46|151.0|49|2|anti-sense REV__L1MEc_dup13928|chr12:110664485-110665275:+|1.0854713004767451|0.0986352515061244|3.46|151.0|49|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 559.761474609375 2 559.30005 1116.58555 0.47464 0.00026547 -0.076603 -4.2844E-05 0.39804 0.00022262 559.2997975609145 68.308 0.12141 71.817 71.772 71.893 3.5094 17 11 2 0 0 0 0.087255 1 15648 15648 24.021 24.021 1 75144 + 13646 28371 8720 8726 16817 16817 0.031917977628836525 IFYWFEKTY 9 Unmodified _IFYWFEKTY_ 0 0 0 L1MC1_dup11185|chr15:57106611-57107602:+|1.3921953247619432|0.0334503833550749|5.38|151.0|55|3|anti-sense L1MC1_dup11185|chr15:57106611-57107602:+|1.3921953247619432|0.0334503833550749|5.38|151.0|55|3|anti-sense L1MC1_dup11185|chr15:57106611-57107602:+|1.3921953247619432|0.0334503833550749|5.38|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_3 7 648.82080078125 2 648.818607 1295.62266 NaN NaN NaN NaN NaN NaN NaN 45.256 1 48.893 48.393 49.393 3.6372 0 0 0 0.39428 1 8645 8645 2.0598 0.57785 1 13647 11092 8721 8727 16818 16818 -0.01332530691388456 IGAHPVSM 8 Unmodified _IGAHPVSM_ 0 0 0 nc|ENSG00000054965|Q92567-3|FAM168A;ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567-3|FAM168A nc|ENSG00000054965|Q92567-3|FAM168A MSMS UPN47_class_I_Rep_1 2 406.2093200683594 2 406.210181 810.405809 NaN NaN NaN NaN NaN NaN NaN 29.787 1 33.545 33.045 34.045 3.7578 0 0 0 0.40581 1 4781 4781 2.8892 0 1 13648 937 8722 8728 16819 16819 -0.006977847259349801 IGARSRALV 9 Unmodified _IGARSRALV_ 0 0 0 REV__nc|ENSG00000115255|Q96HR9|REEP6 REV__nc|ENSG00000115255|Q96HR9|REEP6 MSMS UPN47_class_I_Rep_3 4 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 44.588 1 47.832 47.332 48.332 3.2441 0 0 0 0.38299 1 9365 9365 4.756 0 1 + 13649 31966 8723 8729 16820 16820 0.1039228863688777 IGAYAEFGAL 10 Unmodified _IGAYAEFGAL_ 0 0 0 REV__MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|38|3|sense REV__MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|38|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 506.2607116699219 2 506.260925 1010.5073 0.20774 0.00010517 -0.20578 -0.00010418 0.0019612 9.9286E-07 506.2606411613734 56.302 0.44641 59.474 59.209 59.655 3.1721 35 29 2 0 0 0 0.55873 1 12933 12933 4.3292 0 1 68083 + 13650 31087 8724 8730 16821 16821 0.0024636517761109644 IGAYAEFGAL 10 Unmodified _IGAYAEFGAL_ 0 0 0 REV__MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|38|3|sense REV__MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|38|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 506.260925 1010.5073 0.2363 0.00011963 4.0411 0.0020458 4.2774 0.0021655 506.26127312710963 59.397 0.031555 59.397 59.381 59.413 0 0.0017752 0.0043472 NaN 4.3292 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 107040 + 13651 31087 8724 8730 0.0024636517761109644 IGAYAEFGAL 10 Unmodified _IGAYAEFGAL_ 0 0 0 REV__MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|38|3|sense REV__MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|38|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 506.260925 1010.5073 0.24294 0.00012299 -0.31207 -0.00015799 -0.069127 -3.4996E-05 506.26058514549976 56.049 0.40775 59.35 59.137 59.545 3.3009 -0.04522 -6.045E-05 NaN 4.3292 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 49102 + 13652 31087 8724 8730 0.0024636517761109644 IGDACDDDDDN 11 Unmodified _IGDACDDDDDN_ 0 0 0 nc|ENSG00000137801|P07996-2|THBS1;ENSG00000137801|ENST00000260356|THBS1;CON__Q28194;ENSG00000186340|ENST00000617924|THBS2 nc|ENSG00000137801|P07996-2|THBS1 nc|ENSG00000137801|P07996-2|THBS1 MSMS UPN47_class_I_Rep_3 4 584.193115234375 2 584.190765 1166.36698 NaN NaN NaN NaN NaN NaN NaN 117.38 1 120.83 120.33 121.33 3.4425 0 0 0 0.38417 1 28918 28918 0.30703 0.30703 1 + 13653 648 8725 8731 16822 16822 -0.20955251399573172 IGDKNQQFL 9 Unmodified _IGDKNQQFL_ 0 0 0 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 MULTI-MSMS UPN47_class_I_Rep_3 4 531.7825317382812 2 531.782556 1061.55056 0.35981 0.00019134 -0.045571 -2.4234E-05 0.31424 0.00016711 531.7823799653474 55.914 0.75717 59.092 58.764 59.521 3.1779 96 51 3 0 0 0 0.37599 1 12855 12855 9.3831 1.2276 1 170870 + 13654 18937 8726 8732 16823 16823 0.022245549549097632 IGDPVRVGY 9 Unmodified _IGDPVRVGY_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MULTI-MSMS UPN47_class_I_Rep_2 3 488.2659912109375 2 488.266542 974.51853 -0.13378 -6.5318E-05 0.11786 5.7548E-05 -0.015913 -7.7698E-06 488.2664168971098 40.344 0.80441 43.715 43.414 44.219 3.3712 94 55 2 0 0 0 0.32219 1 8036 8036 12.532 0.89125 1 139420 + 13655 17894 8727 8733 16824 16824 0.030251872717599326 IGDPVRVGY 9 Unmodified _IGDPVRVGY_ 0 0 0 REV__nc|ENSG00000079435|Q05469-2|LIPE REV__nc|ENSG00000079435|Q05469-2|LIPE MULTI-MSMS UPN47_class_I_Rep_3 4 488.26666259765625 2 488.266542 974.51853 -0.28071 -0.00013706 0.30327 0.00014807 0.02256 1.1015E-05 488.2665264016171 40.697 0.8442 43.934 43.406 44.25 3.2372 90 52 2 0 0 0 0.26948 1 8125 8125 15.847 1.0089 1 132530 + 13656 17894 8727 8733 16825 16825 0.030251872717599326 IGELVVWKET 10 Unmodified _IGELVVWKET_ 0 0 0 REV__HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|158|2|anti-sense REV__HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|158|2|anti-sense MSMS UPN46_class_I_Rep_3 1 586.8817138671875 2 587.329339 1172.64412 NaN NaN NaN NaN NaN NaN NaN 67.791 1 67.791 67.291 68.291 0 0 0 0 0.53105 1 15444 15444 1.3295 0.13619 1 + 13657 23697 8728 8734 16826 16826 0.06470854337317178 IGERKNLYTKM 11 Unmodified _IGERKNLYTKM_ 0 0 0 REV__nc|ENSG00000124490|P16562-2|CRISP2 REV__nc|ENSG00000124490|P16562-2|CRISP2 MSMS UPN47_class_I_Rep_1 2 451.5609436035156 3 451.583345 1351.72821 NaN NaN NaN NaN NaN NaN NaN 32.195 1 35.908 35.408 36.408 3.7131 0 0 0 0.38417 1 5509 5509 1.4551 0 1 + 13658 31971 8729 8735 16827 16827 0.06641062162566413 IGESFLYTSIT 11 Unmodified _IGESFLYTSIT_ 0 0 0 REV__HERVP71A-int_dup188|chr15:75066525-75067944:+|1.497060165921317|0.0228722820340919|6.03|151.0|96|3|anti-sense REV__HERVP71A-int_dup188|chr15:75066525-75067944:+|1.497060165921317|0.0228722820340919|6.03|151.0|96|3|anti-sense MSMS UPN48_class_I_Rep_2 6 615.8153686523438 2 615.816261 1229.61797 NaN NaN NaN NaN NaN NaN NaN 38.916 1 42.646 42.146 43.146 3.7297 0 0 0 0.38417 1 6842 6842 1.1933 0 1 + 13659 23931 8730 8736 16828 16828 0.012345403751851336 IGFSPGVRL 9 Unmodified _IGFSPGVRL_ 0 0 0 LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|26|3|anti-sense LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|26|3|anti-sense LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|26|3|anti-sense MSMS UPN46_class_I_Rep_3 1 473.27911376953125 2 473.279452 944.544351 NaN NaN NaN NaN NaN NaN NaN 58.086 1 58.086 57.586 58.586 0 0 0 0 0.22485 1 12766 12766 14.838 1.7958 1 13660 15588 8731 8737 16829 16829 0.06986081514037323 IGGKKRWF 8 Unmodified _IGGKKRWF_ 0 0 0 REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|209|3|sense REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|209|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 495.7737121582031 2 496.295436 990.57632 0.20676 0.00010261 1.0224 0.00050743 1.2292 0.00061004 496.29591829251575 37.273 0.05431 37.273 37.24 37.295 0 8 5 3 0 0 0 0.72333 1 6989 6989 0.79363 0 1 232090 + 13661 26661 8732 8738 16830 16830 0.0806549398784 IGGVIGCLRVF 11 Unmodified _IGGVIGCLRVF_ 0 0 0 REV__ENSG00000087502|ENST00000360150|ERGIC2 REV__ENSG00000087502|ENST00000360150|ERGIC2 MULTI-MSMS UPN46_class_I_Rep_3 1 567.3311157226562 2 567.328619 1132.64269 0.46288 0.00026261 2.3019 0.0013059 2.7648 0.0015685 567.3298005171355 89.335 0.093216 89.335 89.245 89.339 0 10 9 2 0 0 0 0.65271 1 21483 21483 2.9952 0 1 104780 + 13662 17981 8733 8739 16831 16831 0.08166941767581193 IGGVIGCLRVF 11 Unmodified _IGGVIGCLRVF_ 0 0 0 REV__ENSG00000087502|ENST00000360150|ERGIC2 REV__ENSG00000087502|ENST00000360150|ERGIC2 MSMS UPN48_class_I_Rep_3 7 567.3299560546875 2 567.328619 1132.64269 NaN NaN NaN NaN NaN NaN NaN 82.144 1 85.829 85.329 86.329 3.685 0 0 0 0.38417 1 19462 19462 1.3295 0 1 + 13663 17981 8733 8739 16832 16832 0.08166941767581193 IGHKTIPLIL 10 Unmodified _IGHKTIPLIL_ 0 0 0 REV__L1ME2_dup6573|chr8:140016428-140017851:-|1.693653237729995|0.0608671234439076|4.8|151.0|90|2|anti-sense REV__L1ME2_dup6573|chr8:140016428-140017851:-|1.693653237729995|0.0608671234439076|4.8|151.0|90|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.8607788085938 2 552.860609 1103.70667 0.58056 0.00032097 -0.25154 -0.00013907 0.32902 0.0001819 552.8603887074418 56.463 1.1623 59.965 59.374 60.537 3.5014 195 95 3 0 0 0 0.25511 1 12094 12094 38.176 0.20157 1 864570 + 13664 27872 8734 8740 16833 16833 0.1589604519617751 IGHLYIFLG 9 Unmodified _IGHLYIFLG_ 0 0 0 L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|88|3|anti-sense L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|88|3|anti-sense L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|88|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.7971801757812 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 36.066 1 39.477 38.977 39.977 3.4114 0 0 0 0.39326 1 6723 6723 2.3027 0 1 13665 10862 8735 8741 16834 16834 0.06587538690882866 IGIPMPWW 8 Unmodified _IGIPMPWW_ 0 0 0 L1PA7_dup2335|chr3:94072804-94075110:-|1.5168134258813628|0.0879653007515334|4.11|151.0|70|1|anti-sense L1PA7_dup2335|chr3:94072804-94075110:-|1.5168134258813628|0.0879653007515334|4.11|151.0|70|1|anti-sense L1PA7_dup2335|chr3:94072804-94075110:-|1.5168134258813628|0.0879653007515334|4.11|151.0|70|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 499.8168029785156 2 500.259674 998.504795 0.17855 8.9324E-05 -1.6439 -0.0008224 -1.4654 -0.00073308 500.76022820811465 61.551 0.11452 64.718 64.654 64.768 3.1667 11 8 2 0 0 0 0.72333 1 14533 14533 2.8892 0 1 52317 13666 14781 8736 8742 16835 16835 0.005482382389686791 IGIWLQPLIW 10 Unmodified _IGIWLQPLIW_ 0 0 0 REV__ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|2|intron REV__ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|2|intron MSMS UPN48_class_I_Rep_2 6 619.8705444335938 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.627 1 90.344 89.844 90.844 3.7171 0 0 0 0.53105 1 20622 20622 1.8442 0.19162 1 + 13667 18132 8737 8743 16836 16836 0.11296331713219843 IGKKGKNHHYW 11 Unmodified _IGKKGKNHHYW_ 0 0 0 L1M5_dup12296|chr3:195323149-195323646:+|2.269328016284037|0.0469281926179284|5.6|151.0|13|3|sense L1M5_dup12296|chr3:195323149-195323646:+|2.269328016284037|0.0469281926179284|5.6|151.0|13|3|sense L1M5_dup12296|chr3:195323149-195323646:+|2.269328016284037|0.0469281926179284|5.6|151.0|13|3|sense MSMS UPN48_class_I_Rep_3 7 456.5818176269531 3 456.582556 1366.72584 NaN NaN NaN NaN NaN NaN NaN 52.28 1 55.878 55.378 56.378 3.5979 0 0 0 0.38417 1 10786 10786 0.45452 0.1855 1 13668 9091 8738 8744 16837 16837 0.05714394539768364 IGKKRGAIGL 10 Unmodified _IGKKRGAIGL_ 0 0 0 MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|67|3|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|67|3|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|67|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8347473144531 2 506.834926 1011.6553 0.12709 6.4412E-05 -0.1361 -6.8982E-05 -0.0090159 -4.5696E-06 506.8347589365335 53.609 1.1164 57.193 56.498 57.615 3.5836 154 81 3 0 0 0 0.37534 1 11164 11164 21.747 1.293 1 391240 13669 16610 8739 8745 16838 16838 0.14993721222128897 IGKKVELTI 9 Unmodified _IGKKVELTI_ 0 0 0 REV__L1ME3_dup826|chr2:28770273-28770874:+|2.0373467420383093|0.0635212796322219|5.0|151.0|15|3|sense REV__L1ME3_dup826|chr2:28770273-28770874:+|2.0373467420383093|0.0635212796322219|5.0|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 500.8248291015625 2 500.823692 999.632832 NaN NaN NaN NaN NaN NaN NaN 60.951 1 64.425 63.925 64.925 3.4737 0 0 0 0.38639 1 13525 13525 3.9444 0.3479 1 + 13670 27969 8740 8746 16839 16839 0.13300077033841262 IGKLHIMRVW 10 Unmodified _IGKLHIMRVW_ 0 0 0 L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|91|2|anti-sense L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|91|2|anti-sense L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|91|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.8699951171875 2 626.870985 1251.72742 NaN NaN NaN NaN NaN NaN NaN 61.248 1 64.76 64.26 65.26 3.5129 0 0 0 0.53105 1 13520 13520 3.2813 1.6287 1 13671 15417 8741 8747 16840 16840 0.11162312304190891 IGLHHTSV 8 Unmodified _IGLHHTSV_ 0 0 0 REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 432.30059814453125 2 432.240327 862.466101 0.084338 3.6454E-05 1.3302 0.00057497 1.4146 0.00061143 432.2409434065364 39.32 0.43288 39.32 39.209 39.642 0 45 36 2 0 0 0 0.72333 1 7585 7585 0 0 1 118030 + 13672 28946 8742 8748 16841 16841 0.029366489288122466 IGLHHTSV 8 Unmodified _IGLHHTSV_ 0 0 0 REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 432.240327 862.466101 -0.40841 -0.00017653 1.514 0.00065441 1.1056 0.00047788 432.2408563066163 35.58 1.3408 39.256 38.453 39.793 3.6762 -0.21366 5.0364E-05 NaN 0 254 94 3 NaN NaN NaN NaN 0 NaN NaN 0 402990 + 13673 28946 8742 8748 0.029366489288122466 IGLHHTSV 8 Unmodified _IGLHHTSV_ 0 0 0 REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 432.240327 862.466101 -0.025811 -1.1156E-05 1.5127 0.00065386 1.4869 0.00064271 432.2408671982544 36.095 1.1152 39.605 38.903 40.018 3.5101 0.13604 4.9269E-05 NaN 0 290 115 3 NaN NaN NaN NaN 0 NaN NaN 0 459940 + 13674 28946 8742 8748 0.029366489288122466 IGLHHTSV 8 Unmodified _IGLHHTSV_ 0 0 0 REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 432.240327 862.466101 0.068816 2.9745E-05 1.3926 0.00060195 1.4614 0.0006317 432.24080440054814 35.932 1.1703 39.62 38.898 40.068 3.6877 0.15051 -5.4556E-05 NaN 0 294 125 3 NaN NaN NaN NaN 0 NaN NaN 0 414110 + 13675 28946 8742 8748 0.029366489288122466 IGLHHTSV 8 Unmodified _IGLHHTSV_ 0 0 0 REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense REV__L1PA10_dup2193|chr5:78070426-78071578:+|1.5678993567053352|0.0184438131253348|6.41|151.0|64|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 432.240327 862.466101 0.037978 1.6416E-05 1.4119 0.00061027 1.4499 0.00062669 432.2408224921535 35.879 1.2259 39.546 38.856 40.082 3.6667 0.076264 -3.7909E-05 NaN 0 295 123 3 NaN NaN NaN NaN 0 NaN NaN 0 410780 + 13676 28946 8742 8748 0.029366489288122466 IGLHVFPTF 9 Unmodified _IGLHVFPTF_ 0 0 0 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 MSMS UPN48_class_I_Rep_1 5 515.7894287109375 2 515.789653 1029.56475 NaN NaN NaN NaN NaN NaN NaN 73.5 1 76.981 76.481 77.481 3.4812 0 0 0 0.099968 1 17325 17325 24.674 3.1369 1 13677 3561 8743 8749 16842 16842 0.051152521738458745 IGLKQLNGL 9 Unmodified _IGLKQLNGL_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS UPN47_class_I_Rep_3 4 478.3008728027344 2 478.300384 954.586216 0.061956 2.9634E-05 0.3635 0.00017386 0.42545 0.00020349 478.3005619076289 68.389 0.51582 71.587 71.234 71.75 3.1977 47 32 2 0 0 0 0.40174 1 16618 16618 7.9102 0 1 116300 + 13678 18562 8744 8750 16843 16843 0.10710637202578255 IGLKRLQPRKL 11 Unmodified _IGLKRLQPRKL_ 0 0 0 REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF MSMS UPN47_class_I_Rep_3 4 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 23.817 1 27.168 26.668 27.668 3.3509 0 0 0 0.38417 1 3094 3094 0.50596 0 1 + 13679 22876 8745 8751 16844 16844 0.22417277055819795 IGLLQAREK 9 Unmodified _IGLLQAREK_ 0 0 0 ENSG00000198765|ENST00000369522|SYCP1 ENSG00000198765|ENST00000369522|SYCP1 ENSG00000198765|ENST00000369522|SYCP1 MSMS UPN48_class_I_Rep_2 6 514.2987670898438 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 87.222 1 90.939 90.439 91.439 3.7171 0 0 0 0.37891 1 20750 20750 5.7319 1.4026 1 13680 5457 8746 8752 16845 16845 0.10633424605566688 IGLLQAREK 9 Unmodified _IGLLQAREK_ 0 0 0 ENSG00000198765|ENST00000369522|SYCP1 ENSG00000198765|ENST00000369522|SYCP1 ENSG00000198765|ENST00000369522|SYCP1 MSMS UPN48_class_I_Rep_3 7 514.2984619140625 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 87.142 1 90.932 90.432 91.432 3.7905 0 0 0 0.39036 1 20671 20671 2.9952 0.69251 1 13681 5457 8746 8752 16846 16846 0.10633424605566688 IGLNSRLKI 9 Unmodified _IGLNSRLKI_ 0 0 0 Tigger1_dup5409|chr7:5341784-5342146:+|1.2495235951000685|0.0081524325544269|7.26|151.0|15|1|anti-sense Tigger1_dup5409|chr7:5341784-5342146:+|1.2495235951000685|0.0081524325544269|7.26|151.0|15|1|anti-sense Tigger1_dup5409|chr7:5341784-5342146:+|1.2495235951000685|0.0081524325544269|7.26|151.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.3265380859375 2 507.326934 1012.63931 0.22423 0.00011376 -0.30924 -0.00015689 -0.085014 -4.313E-05 507.32669418180666 43.986 0.77041 47.499 47.31 48.081 3.5132 98 55 2 0 0 0 0.39745 1 8431 8431 8.1555 1.4324 1 173630 13682 33123 8747 8753 16847 16847 0.1335001498522388 IGMCKESCND 10 Unmodified _IGMCKESCND_ 0 0 0 ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B MSMS UPN47_class_I_Rep_2 3 550.2178344726562 2 550.214477 1098.4144 NaN NaN NaN NaN NaN NaN NaN 34.897 1 38.323 37.823 38.823 3.4253 0 0 0 0.53105 1 6367 6367 1.1933 0.39971 1 13683 4370 8748 8754 16848 16848 -0.13086966933929034 IGPCPWWLAGP 11 Unmodified _IGPCPWWLAGP_ 0 0 0 REV__LTR13_dup285|chr12:132001049-132002023:-|1.739832875467315|0.1572089378799124|3.47|151.0|47|2|anti-sense REV__LTR13_dup285|chr12:132001049-132002023:-|1.739832875467315|0.1572089378799124|3.47|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.7989501953125 2 598.799694 1195.58484 NaN NaN NaN NaN NaN NaN NaN 38.888 1 42.392 41.892 42.892 3.5048 0 0 0 0.38417 1 6796 6796 3.5965 1.5105 1 + 13684 30834 8749 8755 16849 16849 -0.005133201578473745 IGPHDAVITV 10 Unmodified _IGPHDAVITV_ 0 0 0 REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 511.2875671386719 2 511.287474 1020.5604 0.26562 0.00013581 -0.17984 -9.1952E-05 0.085776 4.3856E-05 511.287314437519 59.296 0.66941 62.713 62.394 63.063 3.4171 81 47 2 0 0 0 0.52562 1 13814 13814 8.7454 1.1365 1 224380 + 13685 18102 8750 8756 16850 16850 0.050937429602640805 IGPIIVIKKF 10 Unmodified _IGPIIVIKKF_ 0 0 0 REV__L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|1|1|sense REV__L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 564.3792724609375 2 564.381177 1126.7478 NaN NaN NaN NaN NaN NaN NaN 41.863 1 41.863 41.363 42.363 0 0 0 0 0.53105 1 8242 8242 0.45834 0 1 + 13686 25754 8751 8757 16851 16851 0.18949806235627875 IGPLLAKR 8 Unmodified _IGPLLAKR_ 0 0 0 REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 434.29205322265625 2 434.292362 866.570172 0.069219 3.0061E-05 -0.34015 -0.00014772 -0.27093 -0.00011766 434.2921113654888 63.512 0.168 66.97 66.866 67.034 3.4578 26 14 2 0 0 0 0.82752 1 14295 14295 2.5775 0 1 378100 + 13687 31013 8752 8758 16852 16852 0.13154975756310705 IGPLLAKR 8 Unmodified _IGPLLAKR_ 0 0 0 REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 434.292362 866.570172 0.018625 8.0887E-06 -0.10563 -4.5875E-05 -0.087007 -3.7786E-05 434.2922071905123 63.483 0.13472 66.842 66.784 66.918 3.3595 -0.067525 0.00015774 NaN 2.5775 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 387690 + 13688 31013 8752 8758 0.13154975756310705 IGPLLAKR 8 Unmodified _IGPLLAKR_ 0 0 0 REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 434.292362 866.570172 -0.40953 -0.00017785 0.081215 3.5271E-05 -0.32831 -0.00014258 434.2922444410593 63.565 0.17005 66.82 66.778 66.948 3.2558 -0.089621 0.00032004 NaN 2.5775 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 48979 + 13689 31013 8752 8758 0.13154975756310705 IGPLLAKR 8 Unmodified _IGPLLAKR_ 0 0 0 REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 434.292362 866.570172 -0.43329 -0.00018818 0.26455 0.00011489 -0.16874 -7.3283E-05 434.29245872719883 63.818 0.14122 66.992 66.951 67.093 3.1741 0.08221 0.00047928 NaN 2.5775 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 142580 + 13690 31013 8752 8758 0.13154975756310705 IGPLLAKR 8 Unmodified _IGPLLAKR_ 0 0 0 REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.069219 3.0061E-05 -0.34015 -0.00014772 -0.27093 -0.00011766 434.2921113654888 63.512 0.168 66.97 66.866 67.034 3.4578 0.059858 -4.5952E-05 NaN 2.5775 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 378100 + 13691 31013 8752 8758 0.13154975756310705 IGPLLAKR 8 Unmodified _IGPLLAKR_ 0 0 0 REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense REV__LTR79_dup317|chr1:211944208-211944644:+|1.0260996246817558|0.2053502922368945|2.32|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 434.292362 866.570172 0.15454 6.7115E-05 -0.57516 -0.00024979 -0.42062 -0.00018267 434.29212898491903 63.39 0.10511 66.9 66.87 66.975 3.5091 -0.010479 -0.00025008 NaN 2.5775 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 707500 + 13692 31013 8752 8758 0.13154975756310705 IGPWLRPV 8 Unmodified _IGPWLRPV_ 0 0 0 Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|162|3|sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|162|3|sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|162|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 469.28106689453125 2 469.284537 936.554522 0.07549 3.5426E-05 -3.7483 -0.001759 -3.6728 -0.0017236 469.28282750928184 107.55 0.13574 111.18 111.13 111.27 3.6313 24 16 3 0 0 0 0.82752 1 25929 25929 8.5933 0 1 2376900 13693 7972 8753 8759 16853 16853 0.08370689239268359 IGQPRTFQSL 10 Unmodified _IGQPRTFQSL_ 0 0 0 L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|18|2|sense L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|18|2|sense L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 573.8011474609375 2 573.81693 1145.61931 0.4989 0.00028628 3.4447 0.0019766 3.9436 0.0022629 573.8186312142243 66.968 0.098 70.465 70.425 70.523 3.4964 5 3 2 0 0 0 0.48573 1 15338 15338 13.042 0.80181 1 33052 13694 13399 8754 8760 16854 16854 0.052322192545943835 IGREPAAR 8 Unmodified _IGREPAAR_ 0 0 0 ENST00000455997.5_1_3:45730878-45731223:+|nuORF ENST00000455997.5_1_3:45730878-45731223:+|nuORF ENST00000455997.5_1_3:45730878-45731223:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.25054931640625 2 435.251226 868.487899 0.10851 4.7229E-05 -0.46453 -0.00020219 -0.35602 -0.00015496 435.25095179379576 72.973 0.4216 72.973 72.686 73.107 0 80 42 2 0 0 0 0.82752 1 16839 16839 2.3027 0 1 224000 13695 6829 8755 8761 16855 16855 0.048394536773685104 IGRSNHWQH 9 Unmodified _IGRSNHWQH_ 0 0 0 REV__ENST00000085079.11_1_19:56204118-56204356:+|nuORF REV__ENST00000085079.11_1_19:56204118-56204356:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.7816162109375 2 567.781213 1133.54787 NaN NaN NaN NaN NaN NaN NaN 31.981 1 35.698 35.198 36.198 3.7174 0 0 0 0.39518 1 5442 5442 1.8442 0.51471 1 + 13696 21462 8756 8762 16856 16856 -0.013558556593807225 IGSHPYVVI 9 Unmodified _IGSHPYVVI_ 0 0 0 REV__L1ME1_dup20252|chr10:112689764-112690413:-|1.279132753379031|0.0085622898630902|7.22|151.0|18|3|sense REV__L1ME1_dup20252|chr10:112689764-112690413:-|1.279132753379031|0.0085622898630902|7.22|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 492.77947998046875 2 492.779285 983.544017 0.35764 0.00017624 -0.24008 -0.00011831 0.11756 5.7932E-05 492.7791876761471 58.881 0.53205 62.163 61.947 62.479 3.2818 44 33 2 0 0 0 0.46869 1 13619 13619 3.9444 0 1 91220 + 13697 27661 8757 8763 16857 16857 0.051586617941893564 IGSHPYVVI 9 Unmodified _IGSHPYVVI_ 0 0 0 REV__L1ME1_dup20252|chr10:112689764-112690413:-|1.279132753379031|0.0085622898630902|7.22|151.0|18|3|sense REV__L1ME1_dup20252|chr10:112689764-112690413:-|1.279132753379031|0.0085622898630902|7.22|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.7795104980469 2 492.779285 983.544017 0.11433 5.634E-05 0.17291 8.5206E-05 0.28724 0.00014155 492.77926097050357 59.146 0.79495 62.311 61.969 62.764 3.1658 74 50 3 0 0 0 0.46869 2 13741 13741;13783 3.9444 0 1 117210 + 13698 27661 8757 8763 16858;16859 16858 0.051586617941893564 IGSIISAAVY 10 Unmodified _IGSIISAAVY_ 0 0 0 ENSG00000124743|ENST00000370905|KLHL31 ENSG00000124743|ENST00000370905|KLHL31 ENSG00000124743|ENST00000370905|KLHL31 MULTI-MSMS UPN46_class_I_Rep_3 1 497.2845153808594 2 497.2844 992.554247 0.26008 0.00012933 0.15615 7.7652E-05 0.41623 0.00020699 497.28434610037283 48.691 0.86918 48.691 48.309 49.178 0 165 83 3 0 0 0 0.21144 1 10171 10171 48.346 0.75146 1 895560 13699 2484 8758 8764 16860 16860 0.05767224728754172 IGTKTKSF 8 Unmodified _IGTKTKSF_ 0 0 0 ENSG00000124743|ENST00000370905|KLHL31 ENSG00000124743|ENST00000370905|KLHL31 ENSG00000124743|ENST00000370905|KLHL31 MULTI-SECPEP UPN47_class_I_Rep_3 4 441.29730224609375 2 441.258185 880.501818 -1.0605 -0.00046795 1.6224 0.00071591 0.56195 0.00024797 441.2587980596135 23.844 0.46709 27.195 26.956 27.423 3.3509 46 37 2 0 0 0 0.72333 1 3094 3094 6.3541 0 1 39699 13700 2484 8759 8765 16861 16861 0.05678686385817855 IGTKTKSF 8 Unmodified _IGTKTKSF_ 0 0 0 ENSG00000124743|ENST00000370905|KLHL31 ENSG00000124743|ENST00000370905|KLHL31 ENSG00000124743|ENST00000370905|KLHL31 MULTI-MATCH UPN47_class_I_Rep_2 3 2 441.258185 880.501818 -0.67365 -0.00029725 0.87197 0.00038476 0.19831 8.7507E-05 441.2584155499258 23.369 0.054579 26.814 26.78 26.834 3.4447 -0.19044 -0.0004387 NaN 6.3541 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 20879 13701 2484 8759 8765 0.05678686385817855 IGYHLEKY 8 Unmodified _IGYHLEKY_ 0 0 0 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 MULTI-SECPEP UPN46_class_I_Rep_3 1 511.28240966796875 2 511.768917 1021.52328 0.24383 0.00012478 -0.074237 -3.7992E-05 0.16959 8.6792E-05 511.7687813259477 60.4 0.18824 60.4 60.259 60.447 0 31 22 2 0 0 0 0.72333 1 13363 13363 2.3027 0.24298 1 132750 13702 3738 8760 8766 16862 16862 0.013380714145114325 IGYVDLREF 9 Unmodified _IGYVDLREF_ 0 0 0 REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 556.7957153320312 2 556.292756 1110.57096 0.61828 0.00034395 -0.14566 -8.1028E-05 0.47263 0.00026292 556.2924305930193 55.094 0.48038 58.65 58.396 58.876 3.5559 40 26 2 0 0 0 0.3898 1 11724 11724 8.5933 0.68312 1 89932 + 13703 17757 8761 8767 16863 16863 0.020097256146982545 IGYVDLREF 9 Unmodified _IGYVDLREF_ 0 0 0 REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 556.292756 1110.57096 0.53322 0.00029663 -0.15746 -8.7594E-05 0.37576 0.00020903 556.2926697577986 55.19 0.54099 58.698 58.394 58.935 3.5082 0.033462 -0.00014753 NaN 8.5933 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 82927 + 13704 17757 8761 8767 0.020097256146982545 IGYVDLREF 9 Unmodified _IGYVDLREF_ 0 0 0 REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF REV__ENST00000467629.1_1_10:106054804-106059039:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 556.292756 1110.57096 0.27424 0.00015256 0.3706 0.00020616 0.64484 0.00035872 556.2930346044968 55.077 0.27627 58.646 58.481 58.757 3.5694 -0.018466 0.00043998 NaN 8.5933 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 91065 + 13705 17757 8761 8767 0.020097256146982545 IGYVYAKYL 9 Unmodified _IGYVYAKYL_ 0 0 0 L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|34|2|sense L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|34|2|sense L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 545.3031616210938 2 545.302593 1088.59063 NaN NaN NaN NaN NaN NaN NaN 65.023 1 68.531 68.031 69.031 3.5077 0 0 0 0.38299 1 14662 14662 4.756 0.81161 1 13706 9816 8762 8768 16864 16864 0.04988101625440322 IHALLKKVK 9 Unmodified _IHALLKKVK_ 0 0 0 L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 525.3635864257812 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 113.54 1 117.04 116.54 117.54 3.4963 0 0 0 0.40038 1 27854 27854 0.6015 0 1 13707 12733 8763 8769 16865 16865 0.18967768778634309 IHAPDKEQLLD 11 Unmodified _IHAPDKEQLLD_ 0 0 0 REV__nc|ENSG00000096070|Q9ULD4-3|BRPF3 REV__nc|ENSG00000096070|Q9ULD4-3|BRPF3 MSMS UPN48_class_I_Rep_1 5 639.8386840820312 2 639.838059 1277.66157 NaN NaN NaN NaN NaN NaN NaN 82.37 1 85.946 85.446 86.446 3.5753 0 0 0 0.38417 1 19668 19668 1.1933 0.66858 1 + 13708 18057 8764 8770 16866 16866 0.033841498723404584 IHARKKKKK 9 Unmodified _IHARKKKKK_ 0 0 0 REV__L1PA8_dup3246|chr6:121262777-121267090:+|1.1422970443104776|0.0267241790816033|5.42|150.0|114|3|sense REV__L1PA8_dup3246|chr6:121262777-121267090:+|1.1422970443104776|0.0267241790816033|5.42|150.0|114|3|sense MSMS UPN46_class_I_Rep_3 1 569.0017700195312 2 568.890567 1135.76658 NaN NaN NaN NaN NaN NaN NaN 50.05 1 50.05 49.55 50.55 0 0 0 0 0.40038 1 10556 10556 0.6015 0 1 + 13709 30218 8765 8771 16867 16867 0.20412780650076456 IHARKRNWI 9 Unmodified _IHARKRNWI_ 0 0 0 REV__L1PA4_dup10704|chr15:90635806-90637568:+|1.075369459109076|0.2854099972486092|1.91|151.0|1|1|sense REV__L1PA4_dup10704|chr15:90635806-90637568:+|1.075369459109076|0.2854099972486092|1.91|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.8567504882812 2 597.354348 1192.69414 0.45156 0.00026974 1.9945 0.0011914 2.4461 0.0014612 597.8562120950553 83.482 0.57435 87.021 86.548 87.122 3.5386 85 58 2 0 0 0 0.48846 1 20840 20840 1.8442 0.36234 1 64736 + 13710 29589 8766 8772 16868 16868 0.10550446576507966 IHCFFVGF 8 Unmodified _IHCFFVGF_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|173|2|anti-sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|173|2|anti-sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|173|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.2364807128906 2 485.236199 968.457844 NaN NaN NaN NaN NaN NaN NaN 36.879 1 40.278 39.778 40.778 3.3988 0 0 0 0.40581 1 6969 6969 2.8892 0 1 13711 15139 8767 8773 16869 16869 -0.02764621312167037 IHCLSWFHA 9 Unmodified _IHCLSWFHA_ 0 0 0 REV__Tigger1_dup5585|chr7:47552364-47553793:+|1.1833747475906682|0.0571377696784197|4.37|149.0|19|2|sense REV__Tigger1_dup5585|chr7:47552364-47553793:+|1.1833747475906682|0.0571377696784197|4.37|149.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 557.2699584960938 2 557.268561 1112.52257 NaN NaN NaN NaN NaN NaN NaN 66.614 1 69.799 69.299 70.299 3.1853 0 0 0 0.39326 1 16078 16078 2.3027 0 1 + 13712 32471 8768 8774 16870 16870 -0.02919046506167433 IHEDLTFF 8 Unmodified _IHEDLTFF_ 0 0 0 L1PREC2_dup1651|chr3:195370973-195371655:-|1.9245393358183056|0.0288417872771377|6.06|151.0|22|1|anti-sense L1PREC2_dup1651|chr3:195370973-195371655:-|1.9245393358183056|0.0288417872771377|6.06|151.0|22|1|anti-sense L1PREC2_dup1651|chr3:195370973-195371655:-|1.9245393358183056|0.0288417872771377|6.06|151.0|22|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 511.2534484863281 2 511.2531 1020.49165 0.30381 0.00015532 0.13429 6.8654E-05 0.4381 0.00022398 511.2529087179407 80.423 0.088684 80.423 80.371 80.46 0 15 8 2 0 0 0 0.82752 1 18954 18954 24.674 0 1 156360 13713 15423 8769 8775 16871 16871 -0.01777921339430577 IHEDLTFF 8 Unmodified _IHEDLTFF_ 0 0 0 L1PREC2_dup1651|chr3:195370973-195371655:-|1.9245393358183056|0.0288417872771377|6.06|151.0|22|1|anti-sense L1PREC2_dup1651|chr3:195370973-195371655:-|1.9245393358183056|0.0288417872771377|6.06|151.0|22|1|anti-sense L1PREC2_dup1651|chr3:195370973-195371655:-|1.9245393358183056|0.0288417872771377|6.06|151.0|22|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 511.25299072265625 2 511.2531 1020.49165 0.30498 0.00015592 -0.30709 -0.000157 -0.0021064 -1.0769E-06 511.2529644374094 80.728 0.71089 80.728 80.46 81.171 0 190 74 4 0 0 0 0.82752 1 18990 18990 30.225 0 1 2289500 13714 15423 8769 8775 16872 16872 -0.01777921339430577 IHELDNLY 8 Unmodified _IHELDNLY_ 0 0 0 REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 MULTI-MSMS UPN46_class_I_Rep_3 1 508.7561340332031 2 508.756007 1015.49746 0.30699 0.00015618 1.4926 0.00075938 1.7996 0.00091556 508.75584730741554 41.385 0.03989 41.385 41.362 41.402 0 4 2 2 0 0 0 0.82752 1 8113 8113 11.64 0.52583 1 53655 + 13715 19795 8770 8776 16873 16873 -0.009668228277632807 IHFLFCWCCYF 11 Unmodified _IHFLFCWCCYF_ 0 0 0 REV__L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|62|3|anti-sense REV__L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|62|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.5442810058594 3 494.544957 1480.61304 0.11234 5.5556E-05 -0.97886 -0.00048409 -0.86653 -0.00042854 494.5444509573384 52.687 0.70808 56.285 56.014 56.723 3.5979 81 47 2 0 0 0 0.47271 2 10874 10874;10923 8.4443 1.8209 1 282090 + 13716 28408 8771 8777 16874;16875 16874 -0.10804081564401713 IHFMSTMIN 9 Unmodified _IHFMSTMIN_ 0 0 0 REV__L1MA2_dup1206|chr3:57263151-57265139:-|2.051847882197214|0.2418521325106735|3.08|151.0|87|2|anti-sense REV__L1MA2_dup1206|chr3:57263151-57265139:-|2.051847882197214|0.2418521325106735|3.08|151.0|87|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.2598876953125 2 547.262087 1092.50962 NaN NaN NaN NaN NaN NaN NaN 40.433 1 44.105 43.605 44.605 3.6719 0 0 0 0.39428 1 8017 8017 2.0598 1.2661 1 + 13717 24830 8772 8778 16876 16876 -0.032932456805610855 IHFRSVCNCK 10 Unmodified _IHFRSVCNCK_ 0 0 0 L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|54|3|sense L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|54|3|sense L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|54|3|sense MSMS UPN46_class_I_Rep_3 1 603.7989501953125 2 603.79716 1205.57977 NaN NaN NaN NaN NaN NaN NaN 18.007 1 18.007 17.507 18.507 0 0 0 0 0.53105 1 1504 1504 1.4819 0 1 13718 11550 8773 8779 16877 16877 -0.014799472921140477 IHFSPAPL 8 Unmodified _IHFSPAPL_ 0 0 0 REV__L1MC4a_dup7544|chr13:28065973-28067048:+|2.213117779117567|0.0015187697224514|10.51|151.0|48|1|anti-sense REV__L1MC4a_dup7544|chr13:28065973-28067048:+|2.213117779117567|0.0015187697224514|10.51|151.0|48|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.8136901855469 2 441.247621 880.480688 0.16273 7.1802E-05 -0.99622 -0.00043958 -0.83349 -0.00036778 441.24717139416833 109.04 0.54657 109.04 108.82 109.37 0 47 35 2 0 0 0 0.72333 1 26700 26700 2.5775 2.5775 1 2389500 + 13719 27019 8774 8780 16878 16878 0.03566721076947488 IHFTYLEAVI 10 Unmodified _IHFTYLEAVI_ 0 0 0 L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|165|3|anti-sense L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|165|3|anti-sense L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|165|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 603.331787109375 2 603.331882 1204.64921 0.3645 0.00021992 -0.55176 -0.00033289 -0.18725 -0.00011298 603.3316368055704 57.673 0.6133 60.842 60.491 61.105 3.1681 63 51 2 0 0 0 0.47413 1 13338 13338 13.906 2.3882 1 119150 13720 11795 8775 8781 16879 16879 0.05507158199930018 IHFWCFIY 8 Unmodified _IHFWCFIY_ 0 0 0 L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 565.2703247070312 2 564.770406 1127.52626 -0.049033 -2.7692E-05 -0.92009 -0.00051964 -0.96913 -0.00054733 564.7694339470607 34.665 0.11176 38.351 38.275 38.386 3.6859 11 8 2 0 0 0 0.82752 1 6266 6266 2.8892 0.58649 1 39402 13721 11526 8776 8782 16880 16880 -0.03240376732310324 IHFWCFIY 8 Unmodified _IHFWCFIY_ 0 0 0 L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7700805664062 2 564.770406 1127.52626 NaN NaN NaN NaN NaN NaN NaN 35.242 1 38.506 38.006 39.006 3.2639 0 0 0 0.4032 1 6504 6504 6.3541 1.1234 1 13722 11526 8776 8782 16881 16881 -0.03240376732310324 IHFWCFIY 8 Unmodified _IHFWCFIY_ 0 0 0 L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7703247070312 2 564.770406 1127.52626 NaN NaN NaN NaN NaN NaN NaN 35.564 1 38.819 38.319 39.319 3.2547 0 0 0 0.40581 1 6602 6602 2.8892 0.58649 1 13723 11526 8776 8782 16882 16882 -0.03240376732310324 IHFWCFIY 8 Unmodified _IHFWCFIY_ 0 0 0 L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7695922851562 2 564.770406 1127.52626 NaN NaN NaN NaN NaN NaN NaN 35.734 1 38.989 38.489 39.489 3.2547 0 0 0 0.40581 1 6654 6654 2.8892 0.58649 1 13724 11526 8776 8782 16883 16883 -0.03240376732310324 IHFYYFCFK 9 Unmodified _IHFYYFCFK_ 0 0 0 L1MEc_dup13869|chr12:100276642-100278187:-|1.4755935659253656|0.029650735473121|5.64|151.0|73|1|anti-sense L1MEc_dup13869|chr12:100276642-100278187:-|1.4755935659253656|0.029650735473121|5.64|151.0|73|1|anti-sense L1MEc_dup13869|chr12:100276642-100278187:-|1.4755935659253656|0.029650735473121|5.64|151.0|73|1|anti-sense MSMS UPN48_class_I_Rep_3 7 634.4759521484375 2 634.30207 1266.58959 NaN NaN NaN NaN NaN NaN NaN 42.552 1 46.193 45.693 46.693 3.6415 0 0 0 0.39428 1 7809 7809 2.0598 0.21551 1 13725 13017 8777 8783 16884 16884 -0.03304436015105239 IHGKATDEVK 10 Unmodified _IHGKATDEVK_ 0 0 0 REV__ENST00000523303.5_1_8:28625665-28628621:-|nuORF REV__ENST00000523303.5_1_8:28625665-28628621:-|nuORF MSMS UPN47_class_I_Rep_1 2 549.3018188476562 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 99.602 1 103.4 102.9 103.9 3.7942 0 0 0 0.53105 1 24621 24621 6.2058 1.4498 1 + 13726 18253 8778 8784 16885 16885 0.04324226500648365 IHGVIYQQT 9 Unmodified _IHGVIYQQT_ 0 0 0 REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|78|3|sense REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|78|3|sense MSMS UPN48_class_I_Rep_2 6 529.7840576171875 2 529.785099 1057.55564 NaN NaN NaN NaN NaN NaN NaN 114.19 1 117.85 117.35 118.35 3.663 0 0 0 0.39518 1 27282 27282 1.8442 0 1 + 13727 28634 8779 8785 16886 16886 0.029168588175252808 IHHDQQGF 8 Unmodified _IHHDQQGF_ 0 0 0 L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|33|2|sense L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|33|2|sense L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|33|2|sense MSMS UPN46_class_I_Rep_3 1 491.2325134277344 2 491.230491 980.446428 NaN NaN NaN NaN NaN NaN NaN 36.348 1 36.348 35.848 36.848 0 0 0 0 0.40581 1 6728 6728 2.8892 0 1 13728 14084 8780 8786 16887 16887 -0.0445772708194454 IHHFFVMR 8 Unmodified _IHHFFVMR_ 0 0 0 L1MA6_dup881|chr3:71443198-71443461:-|1.1369857946213018|0.002665194413585|8.74|151.0|20|3|anti-sense L1MA6_dup881|chr3:71443198-71443461:-|1.1369857946213018|0.002665194413585|8.74|151.0|20|3|anti-sense L1MA6_dup881|chr3:71443198-71443461:-|1.1369857946213018|0.002665194413585|8.74|151.0|20|3|anti-sense MSMS UPN48_class_I_Rep_1 5 543.787353515625 2 543.786921 1085.55929 NaN NaN NaN NaN NaN NaN NaN 34.832 1 38.346 37.846 38.846 3.5144 0 0 0 0.40738 1 5623 5623 0.79363 0 1 13729 9999 8781 8787 16888 16888 0.019932501103994582 IHHIFFIK 8 Unmodified _IHHIFFIK_ 0 0 0 L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|229|3|anti-sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|229|3|anti-sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|229|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.8134155273438 2 527.813462 1053.61237 NaN NaN NaN NaN NaN NaN NaN 33.815 1 37.335 36.835 37.835 3.5201 0 0 0 0.40738 1 5327 5327 0.79363 0 1 13730 10085 8782 8788 16889 16889 0.08770951164683538 IHHISKRVNF 10 Unmodified _IHHISKRVNF_ 0 0 0 REV__L1ME4a_dup5020|chr2:174576894-174577643:-|1.742999445745983|0.1991419983901337|3.13|150.0|1|1|sense REV__L1ME4a_dup5020|chr2:174576894-174577643:-|1.742999445745983|0.1991419983901337|3.13|150.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 417.9204406738281 3 417.575401 1249.70437 -0.12202 -5.0953E-05 0.26175 0.0001093 0.13972 5.8346E-05 417.57540229514706 43.496 0.8307 47.006 46.598 47.429 3.5103 111 68 2 0 0 0 0.84575 1 8110 8110 3.5871 0 1 199450 + 13731 28239 8783 8789 16890 16890 0.08951009511065422 IHHPWIRR 8 Unmodified _IHHPWIRR_ 0 0 0 ENSG00000109846|ENST00000650687|CRYAB ENSG00000109846|ENST00000650687|CRYAB ENSG00000109846|ENST00000650687|CRYAB MSMS UPN47_class_I_Rep_2 3 557.8221435546875 2 557.822684 1113.63082 NaN NaN NaN NaN NaN NaN NaN 42.381 1 45.742 45.242 46.242 3.3611 0 0 0 0.40364 1 8636 8636 5.7604 0.028577 1 13732 1913 8784 8790 16891 16891 0.07854505859268102 IHIALFYGF 9 Unmodified _IHIALFYGF_ 0 0 0 REV__nc|ENSG00000154265|Q8WWZ7-2|ABCA5 REV__nc|ENSG00000154265|Q8WWZ7-2|ABCA5 MSMS UPN48_class_I_Rep_2 6 540.8110961914062 2 540.797478 1079.5804 NaN NaN NaN NaN NaN NaN NaN 34.847 1 38.52 38.02 39.02 3.6735 0 0 0 0.381 1 5667 5667 5.2307 0.47466 1 + 13733 16902 8785 8791 16892 16892 0.04379538690909612 IHKGKKIK 8 Unmodified _IHKGKKIK_ 0 0 0 L1M6_dup2623|chr7:92652906-92653165:-|2.736363076833268|0.0190526597302968|7.17|151.0|6|2|sense L1M6_dup2623|chr7:92652906-92653165:-|2.736363076833268|0.0190526597302968|7.17|151.0|6|2|sense L1M6_dup2623|chr7:92652906-92653165:-|2.736363076833268|0.0190526597302968|7.17|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.3269348144531 2 476.326737 950.63892 0.21472 0.00010228 0.6552 0.00031209 0.86992 0.00041437 476.32689231800475 108.48 0.11551 112.16 112.05 112.17 3.6751 27 9 3 0 0 0 0.82752 1 25651 25651 5.7604 0.52976 1 27299000 13734 9217 8786 8792 16893 16893 0.161626400560408 IHKIRKQFF 9 Unmodified _IHKIRKQFF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS UPN47_class_I_Rep_2 3 406.24896240234375 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 83.181 1 86.593 86.093 87.093 3.4116 0 0 0 0.40177 1 20732 20732 0.26902 0 1 13735 1264 8787 8793 16894 16894 0.1248138552182354 IHKIRKQFF 9 Unmodified _IHKIRKQFF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS UPN47_class_I_Rep_3 4 406.2484130859375 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 80.854 1 84.163 83.663 84.663 3.309 0 0 0 0.40177 1 20224 20224 0.26902 0 1 13736 1264 8787 8793 16895 16895 0.1248138552182354 IHKIRKQFF 9 Unmodified _IHKIRKQFF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS UPN47_class_I_Rep_3 4 406.24859619140625 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 81.282 1 84.605 84.105 85.105 3.3231 0 0 0 0.40177 1 20340 20340 0.26902 0 1 13737 1264 8787 8793 16896 16896 0.1248138552182354 IHKIRKQFF 9 Unmodified _IHKIRKQFF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS UPN48_class_I_Rep_3 7 406.24871826171875 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 80.867 1 84.531 84.031 85.031 3.6635 0 0 0 0.40177 1 19136 19136 0.26902 0 1 13738 1264 8787 8793 16897 16897 0.1248138552182354 IHKKKIKG 8 Unmodified _IHKKKIKG_ 0 0 0 REV__L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|14|2|sense REV__L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 476.3268127441406 2 476.326737 950.63892 0.22417 0.00010678 0.22807 0.00010864 0.45224 0.00021541 476.3266962829372 108.31 0.54762 111.98 111.72 112.27 3.6746 213 61 4 0 0 0 0.82752 1 25680 25680 0.79363 0 1 47872000 + 13739 27005 8788 8794 16898 16898 0.1616264005605217 IHKTKLIVLP 10 Unmodified _IHKTKLIVLP_ 0 0 0 REV__L1M5_dup16480|chr5:43048490-43048811:-|1.3698488603960326|0.2673578305883696|2.36|151.0|9|2|sense REV__L1M5_dup16480|chr5:43048490-43048811:-|1.3698488603960326|0.2673578305883696|2.36|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 581.40576171875 2 581.389534 1160.76451 NaN NaN NaN NaN NaN NaN NaN 108.05 1 111.68 111.18 112.18 3.6313 0 0 0 0.53105 1 26104 26104 6.7232 0 1 + 13740 24623 8789 8795 16899 16899 0.19056307121604732 IHLALSRTRP 10 Unmodified _IHLALSRTRP_ 0 0 0 ENST00000545294.5_1_1:162492490-162492613:+|nuORF ENST00000545294.5_1_1:162492490-162492613:+|nuORF ENST00000545294.5_1_1:162492490-162492613:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 582.3535766601562 2 582.354014 1162.69348 0.51874 0.00030209 -0.75152 -0.00043765 -0.23277 -0.00013556 582.3540470327207 99.233 0.13403 99.233 99.173 99.307 0 31 12 3 0 0 0 0.54466 2 24155 24155;24188 6.2058 0.47393 1 17656000 13741 7375 8790 8796 16900;16901 16900 0.11863607136797327 IHLGNTLVW 9 Unmodified _IHLGNTLVW_ 0 0 0 MER4E1_dup716|chr11:121616735-121617517:-|2.924490594956012|0.141928451777243|4.36|151.0|31|1|anti-sense MER4E1_dup716|chr11:121616735-121617517:-|2.924490594956012|0.141928451777243|4.36|151.0|31|1|anti-sense MER4E1_dup716|chr11:121616735-121617517:-|2.924490594956012|0.141928451777243|4.36|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 526.797607421875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 28.265 1 31.896 31.396 32.396 3.6311 0 0 0 0.39428 1 3870 3870 2.0598 0 1 13742 16045 8791 8797 16902 16902 0.05773753059793307 IHLHKAKKKL 10 Unmodified _IHLHKAKKKL_ 0 0 0 L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|15|2|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|15|2|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|15|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 608.4060668945312 2 608.40605 1214.79755 0.5567 0.0003387 -0.52512 -0.00031949 0.031581 1.9214E-05 608.4055899557077 108.01 0.080879 111.69 111.67 111.75 3.6813 23 7 4 0 0 0 0.84575 1 25531 25531 6.7232 1.4263 1 4461700 13743 11762 8792 8798 16903 16903 0.19873933964299795 IHLHKNKEE 9 Unmodified _IHLHKNKEE_ 0 0 0 REV__ENST00000544547.5_1_2:109302332-109302491:+|nuORF REV__ENST00000544547.5_1_2:109302332-109302491:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 574.3134155273438 2 574.314554 1146.61456 0.048514 2.7862E-05 -0.66403 -0.00038136 -0.61551 -0.0003535 574.3141974561304 12.796 0.19555 16.184 16.106 16.301 3.388 43 21 3 0 0 0 0.50015 1 176 176 0.6015 0 1 69851 + 13744 22928 8793 8799 16904 16904 0.04711335111824155 IHLHKNKEE 9 Unmodified _IHLHKNKEE_ 0 0 0 REV__ENST00000544547.5_1_2:109302332-109302491:+|nuORF REV__ENST00000544547.5_1_2:109302332-109302491:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 574.314554 1146.61456 0.048514 2.7862E-05 -0.66403 -0.00038136 -0.61551 -0.0003535 574.3141974561304 12.796 0.19555 16.184 16.106 16.301 3.388 0.043117 -0.00018592 NaN 0.6015 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 69851 + 13745 22928 8793 8799 0.04711335111824155 IHLHKNKEE 9 Unmodified _IHLHKNKEE_ 0 0 0 REV__ENST00000544547.5_1_2:109302332-109302491:+|nuORF REV__ENST00000544547.5_1_2:109302332-109302491:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 574.314554 1146.61456 -0.4405 -0.00025299 -0.32322 -0.00018563 -0.76372 -0.00043862 574.3144895026053 12.676 0.30577 16.05 15.885 16.191 3.3734 -0.091066 0.00020554 NaN 0.6015 64 39 2 NaN NaN NaN NaN 0 NaN NaN 0 44211 + 13746 22928 8793 8799 0.04711335111824155 IHLIKGIKK 9 Unmodified _IHLIKGIKK_ 0 0 0 L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense MSMS UPN47_class_I_Rep_3 4 525.7719116210938 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 59.523 1 62.688 62.188 63.188 3.1651 0 0 0 0.40038 1 13912 13912 0.6015 0 1 13747 15243 8794 8800 16905 16905 0.18967768778657046 IHLLLKNKKM 10 Unmodified _IHLLLKNKKM_ 0 0 0 REV__L1ME3B_dup5565|chr11:117016815-117017102:+|2.807044418319995|0.0100930613619266|8.12|151.0|5|2|sense REV__L1ME3B_dup5565|chr11:117016815-117017102:+|2.807044418319995|0.0100930613619266|8.12|151.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 413.26605224609375 3 413.265288 1236.77403 NaN NaN NaN NaN NaN NaN NaN 76.295 1 79.617 79.117 80.117 3.3216 0 0 0 0.53105 1 18881 18881 0.69767 0.07084 1 + 13748 28063 8795 8801 16906 16906 0.16511752135488678 IHNNINLN 8 Unmodified _IHNNINLN_ 0 0 0 L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|20|1|sense L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|20|1|sense L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|20|1|sense MSMS UPN47_class_I_Rep_2 3 476.2536315917969 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 20.939 1 24.346 23.846 24.846 3.4074 0 0 0 0.40364 1 2260 2260 5.7604 0 1 13749 13498 8796 8802 16907 16907 0.016151324691691116 IHNTASELY 9 Unmodified _IHNTASELY_ 0 0 0 L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|7|1|sense L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|7|1|sense L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.7606201171875 2 524.258914 1046.50327 -0.24747 -0.00012974 0.96697 0.00050694 0.7195 0.00037721 524.2589379968559 43.307 0.63947 46.665 46.402 47.041 3.358 80 42 3 0 0 0 0.42249 1 9017 9017 6.7232 0 1 93911 13750 10253 8797 8803 16908 16908 -0.018117243160759244 IHPKKVVPA 9 Unmodified _IHPKKVVPA_ 0 0 0 REV__ENSG00000136875|ENST00000374198|PRPF4 REV__ENSG00000136875|ENST00000374198|PRPF4 MSMS UPN46_class_I_Rep_3 1 494.8201599121094 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 19.512 1 19.512 19.012 20.012 0 0 0 0 0.4007 1 1870 1870 0.52476 0 1 + 13751 19206 8798 8804 16909 16909 0.12862933819133104 IHPLVCPLCH 10 Unmodified _IHPLVCPLCH_ 0 0 0 nc|ENSG00000158286|Q6ZRF8-2|RNF207;ENSG00000158286|ENST00000377939|RNF207 nc|ENSG00000158286|Q6ZRF8-2|RNF207 nc|ENSG00000158286|Q6ZRF8-2|RNF207 MULTI-MSMS UPN47_class_I_Rep_3 4 566.2932739257812 2 566.293722 1130.57289 0.53916 0.00030533 -1.5997 -0.0009059 -1.0605 -0.00060057 566.2928427175877 51.133 0.60199 54.35 53.994 54.596 3.2163 43 27 2 0 0 0 0.56281 1 11393 11393 1.8442 0 1 63787 13752 3794 8799 8805 16910 16910 0.012827398273202562 IHPRQPPK 8 Unmodified _IHPRQPPK_ 0 0 0 AluSx_dup45765|chr7:101831293-101831591:-|1.440630127501683|0.0340668909819217|5.4|151.0|18|2|anti-sense AluSx_dup45765|chr7:101831293-101831591:-|1.440630127501683|0.0340668909819217|5.4|151.0|18|2|anti-sense AluSx_dup45765|chr7:101831293-101831591:-|1.440630127501683|0.0340668909819217|5.4|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.7903747558594 2 486.790518 971.566484 0.23349 0.00011366 -0.83245 -0.00040523 -0.59896 -0.00029157 486.78998407785207 35.097 1.0992 38.771 38.301 39.4 3.6735 136 105 2 0 0 0 0.82752 1 5701 5701 5.2307 0.47466 1 96842 13753 283 8800 8806 16911 16911 0.07956305982463618 IHPWILLMP 9 Unmodified _IHPWILLMP_ 0 0 0 MER72_dup315|chr6:15554466-15555169:-|1.3795917842316896|0.022811383252109|5.92|151.0|22|3|sense MER72_dup315|chr6:15554466-15555169:-|1.3795917842316896|0.022811383252109|5.92|151.0|22|3|sense MER72_dup315|chr6:15554466-15555169:-|1.3795917842316896|0.022811383252109|5.92|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 560.7244873046875 2 560.322805 1118.63106 NaN NaN NaN NaN NaN NaN NaN 89.048 1 89.048 88.548 89.548 0 0 0 0 0.40038 1 21410 21410 0.6015 0 1 13754 16201 8801 8807 16912 16912 0.07648744744233227 IHQIEGSAL 9 Unmodified _IHQIEGSAL_ 0 0 0 REV__L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|47|2|sense REV__L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|47|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 484.2643127441406 2 484.263999 966.513445 0.14754 7.1449E-05 -0.059767 -2.8943E-05 0.087774 4.2506E-05 484.26387826529435 43.895 1.1404 47.534 47.123 48.264 3.6385 211 76 4 0 0 0 0.19147 1 8368 8368 21.537 1.1224 1 1374400 + 13755 25123 8802 8808 16913 16913 0.028848834091604658 IHQLHHLWE 9 Unmodified _IHQLHHLWE_ 0 0 0 L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|173|3|anti-sense L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|173|3|anti-sense L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|173|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 404.58905029296875 3 404.880602 1211.61998 0.030921 1.2519E-05 -1.8524 -0.00074999 -1.8215 -0.00073748 405.21369733147776 40.072 0.37997 43.814 43.592 43.972 3.7413 44 37 2 0 0 0 0.1229 1 7134 7134 4.897 1.31 1 37737 13756 8906 8803 8809 16914 16914 0.022630586943023445 IHRCLFKY 8 Unmodified _IHRCLFKY_ 0 0 0 REV__L1MB7_dup10620|chr9:26888624-26889135:+|1.2559795278925467|0.1757773833407964|2.84|151.0|24|1|anti-sense REV__L1MB7_dup10620|chr9:26888624-26889135:+|1.2559795278925467|0.1757773833407964|2.84|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_2 6 540.2954711914062 2 540.294579 1078.57461 NaN NaN NaN NaN NaN NaN NaN 43.051 1 46.813 46.313 47.313 3.7617 0 0 0 0.40625 1 8045 8045 2.3027 0 1 + 13757 26117 8804 8810 16915 16915 0.03846116907584474 IHRGRVSPV 9 Unmodified _IHRGRVSPV_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|250|2|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|250|2|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|250|2|anti-sense MSMS UPN47_class_I_Rep_1 2 510.8088073730469 2 510.8067 1019.59885 NaN NaN NaN NaN NaN NaN NaN 61.568 1 64.936 64.436 65.436 3.3681 0 0 0 0.38784 1 14444 14444 3.5965 0 1 13758 8293 8805 8811 16916 16916 0.08983093385472785 IHRKIKRQSRK 11 Unmodified _IHRKIKRQSRK_ 0 0 0 REV__L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|21|2|sense REV__L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 484.3152160644531 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 54.106 1 57.61 57.11 58.11 3.5044 0 0 0 0.38417 1 12178 12178 0.50596 0.41111 1 + 13759 28628 8806 8812 16917 16917 0.20993100921850782 IHRLGKGT 8 Unmodified _IHRLGKGT_ 0 0 0 L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|1|1|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|1|1|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 441.2693176269531 2 441.269419 880.524284 NaN NaN NaN NaN NaN NaN NaN 55.5 1 55.5 55 56 0 0 0 0 0.40738 1 12065 12065 0.79363 0 1 13760 10920 8807 8813 16918 16918 0.07924330574110172 IHRLGKGT 8 Unmodified _IHRLGKGT_ 0 0 0 L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|1|1|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|1|1|sense L1MB8_dup11992|chr12:116677333-116677718:-|1.291341159871971|0.0032205986400206|8.65|133.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 441.26971435546875 2 441.269419 880.524284 NaN NaN NaN NaN NaN NaN NaN 52.534 1 55.74 55.24 56.24 3.2055 0 0 0 0.40738 1 11781 11781 0.79363 0 1 13761 10920 8807 8813 16919 16919 0.07924330574110172 IHRNAHRKNK 10 Unmodified _IHRNAHRKNK_ 0 0 0 ENSG00000127995|ENST00000297273|CASD1 ENSG00000127995|ENST00000297273|CASD1 ENSG00000127995|ENST00000297273|CASD1 MSMS UPN48_class_I_Rep_3 7 637.3721313476562 2 637.371061 1272.72757 NaN NaN NaN NaN NaN NaN NaN 101.94 1 105.71 105.21 106.21 3.776 0 0 0 0.53105 1 24095 24095 1.4819 0 1 13762 2580 8808 8814 16920 16920 0.10211448348400154 IHSDERPFK 9 Unmodified _IHSDERPFK_ 0 0 0 ENST00000477786.5_1_20:50705508-50792496:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64 ENST00000477786.5_1_20:50705508-50792496:-|nuORF ENST00000477786.5_1_20:50705508-50792496:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 564.7920532226562 2 564.793455 1127.57236 -0.050761 -2.8669E-05 -1.0745 -0.00060687 -1.1253 -0.00063553 564.7928905288903 34.154 0.37525 37.84 37.626 38.001 3.6859 36 27 2 0 0 0 0.45688 1 6109 6109 4.756 0 1 90760 13763 806 8809 8815 16921 16921 0.013673597034767226 IHTHVPSATP 10 Unmodified _IHTHVPSATP_ 0 0 0 REV__L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|12|1|sense REV__L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.2816772460938 2 530.282723 1058.55089 0.070949 3.7623E-05 0.37848 0.0002007 0.44943 0.00023833 530.7845245602067 43.266 0.16794 46.508 46.492 46.66 3.2419 12 9 2 0 0 0 0.54822 1 9005 9005 5.7319 0.43497 1 58268 + 13764 29283 8810 8816 16922 16922 0.023959746747550525 IHTSRKLS 8 Unmodified _IHTSRKLS_ 0 0 0 REV__L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|97|1|anti-sense REV__L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|97|1|anti-sense MSMS UPN46_class_I_Rep_3 1 471.2801818847656 2 471.279983 940.545414 NaN NaN NaN NaN NaN NaN NaN 87.095 1 87.095 86.595 87.595 0 0 0 0 0.40404 1 20850 20850 5.2307 0 1 + 13765 24299 8811 8817 16923 16923 0.0727629588294576 IHTSRKLS 8 Unmodified _IHTSRKLS_ 0 0 0 REV__L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|97|1|anti-sense REV__L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|97|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.2800598144531 2 471.279983 940.545414 0.23349 0.00011004 -0.20659 -9.7361E-05 0.026906 1.268E-05 471.2798350119452 83.363 0.87495 87.091 86.748 87.623 3.7281 157 111 2 0 0 0 0.82752 2 19723 19723;19756 5.2307 0 1 224670 + 13766 24299 8811 8817 16924;16925 16924 0.0727629588294576 IHVFTKCF 8 Unmodified _IHVFTKCF_ 0 0 0 REV__LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|14|2|sense REV__LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 497.76470947265625 2 497.762581 993.510608 NaN NaN NaN NaN NaN NaN NaN 22.866 1 26.617 26.117 27.117 3.7507 0 0 0 0.40643 1 2405 2405 2.0598 0 1 + 13767 30938 8812 8818 16926 16926 0.013593367506473442 IHVIQGQI 8 Unmodified _IHVIQGQI_ 0 0 0 REV__L1MC5a_dup14168|chr15:100939109-100940120:-|1.478710898936426|0.024033968685902|5.94|151.0|68|3|anti-sense REV__L1MC5a_dup14168|chr15:100939109-100940120:-|1.478710898936426|0.024033968685902|5.94|151.0|68|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2710876464844 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 28.262 1 32.028 31.528 32.528 3.7662 0 0 0 0.40604 1 4328 4328 2.5775 0 1 + 13768 27130 8813 8819 16927 16927 0.0716979499700301 IHVIYKDTD 9 Unmodified _IHVIYKDTD_ 0 0 0 L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|67|2|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|67|2|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|67|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.2925415039062 2 552.290214 1102.56587 0.54501 0.000301 4.4321 0.0024478 4.9772 0.0027488 552.2923951663629 69.256 0.10246 72.71 72.682 72.785 3.4548 8 6 2 0 0 0 0.47197 1 16056 16056 3.5965 0 1 37569 13769 9514 8814 8820 16928 16928 0.018694217520987877 IHVLCHFF 8 Unmodified _IHVLCHFF_ 0 0 0 L1PB2_dup2342|chr14:50917949-50918802:+|2.3679330781518977|0.1985678936401793|3.58|151.0|58|3|anti-sense L1PB2_dup2342|chr14:50917949-50918802:+|2.3679330781518977|0.1985678936401793|3.58|151.0|58|3|anti-sense L1PB2_dup2342|chr14:50917949-50918802:+|2.3679330781518977|0.1985678936401793|3.58|151.0|58|3|anti-sense MSMS UPN46_class_I_Rep_3 1 508.2635803222656 2 508.262748 1014.51094 NaN NaN NaN NaN NaN NaN NaN 95.654 1 95.654 95.154 96.154 0 0 0 0 0.40738 1 23234 23234 0.79363 0 1 13770 15234 8815 8821 16929 16929 0.0042675647049463805 IHVLITVAY 9 Unmodified _IHVLITVAY_ 0 0 0 MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 514.8084106445312 2 514.810585 1027.60662 NaN NaN NaN NaN NaN NaN NaN 72.703 1 76.083 75.583 76.583 3.3799 0 0 0 0.39428 1 17806 17806 2.0598 0.21551 1 13771 16354 8816 8822 16930 16930 0.0939180786238012 IHVSKVRWCLI 11 Unmodified _IHVSKVRWCLI_ 0 0 0 ENSG00000143322.21,ABL2,chr1,-,I3.1,179126673,179131148|24|4.76|2|intron ENSG00000143322.21,ABL2,chr1,-,I3.1,179126673,179131148|24|4.76|2|intron ENSG00000143322.21,ABL2,chr1,-,I3.1,179126673,179131148|24|4.76|2|intron MULTI-MSMS UPN47_class_I_Rep_2 3 451.9320373535156 3 451.932309 1352.7751 0.030098 1.3602E-05 0.33508 0.00015143 0.36518 0.00016504 451.9325116371917 92.183 0.18208 95.649 95.513 95.696 3.4652 45 25 2 0 0 0 0.68081 1 22777 22777 0.45452 0 1 261210 13772 3286 8817 8823 16931 16931 0.11281966504407137 IHVSLETL 8 Unmodified _IHVSLETL_ 0 0 0 REV__L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|184|3|anti-sense REV__L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|184|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.2632751464844 2 456.263468 910.512382 -0.24061 -0.00010978 0.32572 0.00014862 0.085114 3.8835E-05 456.26350685802765 56.965 0.91532 60.137 59.779 60.694 3.1721 174 76 3 0 0 0 0.82752 1 13273 13273 10.183 0 1 705610 + 13773 30211 8818 8824 16932 16932 0.05354669040252702 IHVWLDRI 8 Unmodified _IHVWLDRI_ 0 0 0 REV__L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|52|1|anti-sense REV__L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|52|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 525.8060913085938 2 526.306001 1050.59745 0.30256 0.00015924 3.4319 0.0018062 3.7345 0.0019655 526.3079318937677 45.165 0.18507 45.165 45.109 45.294 0 21 16 2 0 0 0 0.72333 1 9181 9181 6.3541 0 1 224620 + 13774 28390 8819 8825 16933 16933 0.07417459296698325 IHWFKLFV 8 Unmodified _IHWFKLFV_ 0 0 0 REV__L1ME1_dup19869|chr10:79800175-79800529:+|1.1886949103268745|0.1101182223433473|3.43|150.0|25|3|anti-sense REV__L1ME1_dup19869|chr10:79800175-79800529:+|1.1886949103268745|0.1101182223433473|3.43|150.0|25|3|anti-sense MSMS UPN48_class_I_Rep_3 7 545.3162841796875 2 545.315838 1088.61712 NaN NaN NaN NaN NaN NaN NaN 83.206 1 86.912 86.412 87.412 3.7066 0 0 0 0.40746 1 19724 19724 0.69038 0 1 + 13775 27655 8820 8826 16934 16934 0.07635835307473826 IHWLQRLR 8 Unmodified _IHWLQRLR_ 0 0 0 ENST00000334166.8_1_2:150325168-150325279:+|nuORF ENST00000334166.8_1_2:150325168-150325279:+|nuORF ENST00000334166.8_1_2:150325168-150325279:+|nuORF MSMS UPN46_class_I_Rep_3 1 561.338134765625 2 561.338167 1120.66178 NaN NaN NaN NaN NaN NaN NaN 92.591 1 92.591 92.091 93.091 0 0 0 0 0.40738 1 22412 22412 0.79363 0 1 13776 6196 8821 8827 16935 16935 0.10627659173496795 IHWLYLVAT 9 Unmodified _IHWLYLVAT_ 0 0 0 L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|52|2|sense L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|52|2|sense L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|52|2|sense MSMS UPN48_class_I_Rep_1 5 558.3162231445312 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 90.393 1 94.019 93.519 94.519 3.626 0 0 0 0.39428 1 21723 21723 2.0598 0.21551 1 13777 11344 8822 8828 16936 16936 0.06479210236625477 IHWLYLVAT 9 Unmodified _IHWLYLVAT_ 0 0 0 L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|52|2|sense L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|52|2|sense L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|52|2|sense MSMS UPN48_class_I_Rep_2 6 558.3158569335938 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 90.465 1 94.212 93.712 94.712 3.7471 0 0 0 0.39428 1 21556 21556 2.0598 0.40713 1 13778 11344 8822 8828 16937 16937 0.06479210236625477 IHWMKKIWVI 10 Unmodified _IHWMKKIWVI_ 0 0 0 REV__L1HS_dup1374|chr14:30684810-30690837:-|1.2268582469020992|0.1603142714844668|2.94|151.0|158|3|sense REV__L1HS_dup1374|chr14:30684810-30690837:-|1.2268582469020992|0.1603142714844668|2.94|151.0|158|3|sense MSMS UPN47_class_I_Rep_2 3 451.93280029296875 3 451.933649 1352.77912 NaN NaN NaN NaN NaN NaN NaN 91.969 1 95.434 94.934 95.934 3.4652 0 0 0 0.53105 1 22747 22747 0.77653 0.078866 1 + 13779 24000 8823 8829 16938 16938 0.11684055998102849 IHYMWIIL 8 Unmodified _IHYMWIIL_ 0 0 0 REV__L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|56|2|anti-sense REV__L1MC1_dup1696|chr2:152686746-152687936:+|1.0882405695695678|0.021626901706808|5.65|151.0|56|2|anti-sense MSMS UPN48_class_I_Rep_1 5 544.8016357421875 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 19.537 1 23.075 22.575 23.575 3.5378 0 0 0 0.40581 1 1499 1499 2.8892 0.82947 1 + 13780 26530 8824 8830 16939 16939 0.048567693358791075 IHYVDIHLYV 10 Unmodified _IHYVDIHLYV_ 0 0 0 REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|268|2|anti-sense REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|268|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 636.3441162109375 2 636.342781 1270.67101 0.50832 0.00032346 -0.52384 -0.00033334 -0.015522 -9.877E-06 636.843151461989 67.009 0.081009 70.461 70.438 70.519 3.4516 7 5 2 0 0 0 0.84575 1 15376 15376 1.8442 0 1 90176 + 13781 29956 8825 8831 16940 16940 0.04649962948519715 IIAEPLLVD 9 Unmodified _IIAEPLLVD_ 0 0 0 REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A MSMS UPN46_class_I_Rep_3 1 491.7964782714844 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 58.068 1 58.068 57.568 58.568 0 0 0 0 0.38478 1 12761 12761 4.3292 0 1 + 13782 19898 8826 8832 16941 16941 0.08312395388566074 IIAHHSVKLL 10 Unmodified _IIAHHSVKLL_ 0 0 0 FRAM_dup3368|chr8:97647798-97647965:+|1.0319174586842903|0.0182424196920875|5.82|151.0|12|3|anti-sense FRAM_dup3368|chr8:97647798-97647965:+|1.0319174586842903|0.0182424196920875|5.82|151.0|12|3|anti-sense FRAM_dup3368|chr8:97647798-97647965:+|1.0319174586842903|0.0182424196920875|5.82|151.0|12|3|anti-sense MSMS UPN46_class_I_Rep_3 1 565.8544311523438 2 565.855858 1129.69716 NaN NaN NaN NaN NaN NaN NaN 108.54 1 108.54 108.04 109.04 0 0 0 0 0.53105 1 26550 26550 8.1555 1.4324 1 13783 7779 8827 8833 16942 16942 0.13750276910673165 IIARGANR 8 Unmodified _IIARGANR_ 0 0 0 REV__L1MEc_dup4877|chr4:73207317-73207906:+|1.384367450139131|0.016596883714029|6.38|151.0|2|1|sense REV__L1MEc_dup4877|chr4:73207317-73207906:+|1.384367450139131|0.016596883714029|6.38|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 435.7669982910156 2 435.767043 869.519533 0.13944 6.0764E-05 -0.3208 -0.00013979 -0.18136 -7.903E-05 435.76676039966645 82.762 0.076073 82.762 82.738 82.814 0 10 7 2 0 0 0 0.82752 1 19629 19629 2.3027 0 1 111470 + 13784 28458 8828 8834 16943 16943 0.07955446431321889 IIASMPEPVIR 11 Unmodified _IIASMPEPVIR_ 0 0 0 L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|317|3|anti-sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|317|3|anti-sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|317|3|anti-sense MSMS UPN48_class_I_Rep_1 5 613.8153076171875 2 613.352291 1224.69003 NaN NaN NaN NaN NaN NaN NaN 71.137 1 74.603 74.103 75.103 3.466 0 0 0 0.38417 1 16611 16611 5.2969 0.39987 1 13785 14896 8829 8835 16944 16944 0.08667176247899988 IIATPKPYI 9 Unmodified _IIATPKPYI_ 0 0 0 REV__L1M5_dup19709|chr6:42006182-42006624:+|1.2335513220373229|0.0181169904634675|6.09|151.0|16|3|sense REV__L1M5_dup19709|chr6:42006182-42006624:+|1.2335513220373229|0.0181169904634675|6.09|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.33392333984375 2 508.312961 1014.61137 0.21759 0.0001106 -4.0072 -0.0020369 -3.7897 -0.0019263 508.3109853261109 73.097 0.15866 76.483 76.362 76.52 3.3861 11 8 2 0 0 0 0.48846 1 17938 17938 1.8442 0.19162 1 85454 + 13786 24633 8830 8836 16945 16945 0.10464692005132292 IICDCDLWSV 10 Unmodified _IICDCDLWSV_ 0 0 0 Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|9|3|sense Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|9|3|sense Tigger1_dup6061|chr7:158777762-158778043:-|1.3033735104210444|0.0426136684787236|4.93|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.7651977539062 2 583.76466 1165.51477 0.089608 5.231E-05 0.6654 0.00038844 0.75501 0.00044075 583.7651524007321 44.831 0.75816 48.531 48.269 49.028 3.6999 71 48 2 0 0 0 0.56033 1 9327 9327 3.5965 0.60125 1 86605 13787 33145 8831 8837 16946 16946 -0.061369866086351976 IICIFMRY 8 Unmodified _IICIFMRY_ 0 0 0 L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|67|1|anti-sense L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|67|1|anti-sense L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_2 3 529.7793579101562 2 529.779916 1057.54528 NaN NaN NaN NaN NaN NaN NaN 77.506 1 80.838 80.338 81.338 3.3315 0 0 0 0.4044 1 19228 19228 4.756 0.42677 1 13788 9846 8832 8838 16947 16947 0.01880836567102051 IICWMVLI 8 Unmodified _IICWMVLI_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|302|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|302|3|anti-sense MSMS UPN47_class_I_Rep_1 2 495.78045654296875 2 495.779385 989.544217 NaN NaN NaN NaN NaN NaN NaN 84.082 1 87.648 87.148 88.148 3.5655 0 0 0 0.39167 1 21037 21037 11.114 0 1 + 13789 25730 8833 8839 16948 16948 0.04902622198198969 IIDDALVRL 9 Unmodified _IIDDALVRL_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS UPN47_class_I_Rep_2 3 514.31005859375 2 514.310949 1026.60735 0.10744 5.5259E-05 -0.023819 -1.2251E-05 0.083623 4.3008E-05 514.3108493692381 62.068 0.74043 65.328 64.929 65.67 3.2594 68 51 2 0 0 0 0.16559 1 14688 14688 24.021 4.7636 1 112730 13790 2066 8834 8840 16949 16949 0.09510602511431898 IIDDALVRL 9 Unmodified _IIDDALVRL_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MSMS UPN47_class_I_Rep_3 4 514.3107299804688 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 62.349 1 65.515 65.015 66.015 3.1667 0 0 0 0.32573 1 14775 14775 9.3831 1.473 1 13791 2066 8834 8840 16950 16950 0.09510602511431898 IIDHHDNTY 9 Unmodified _IIDHHDNTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_1 2 564.2592163085938 2 564.259445 1126.50434 -0.10236 -5.7756E-05 0.085236 4.8095E-05 -0.017121 -9.6605E-06 564.2594665878654 19.882 0.93093 23.494 23.056 23.987 3.6118 167 100 2 0 0 0 0.11683 3 1899 1836;1899;1941 30.637 18.105 1 76175 13792 5336 8835 8841 16951;16952;16953 16952 -0.05385509947177525 IIDHHDNTY 9 Unmodified _IIDHHDNTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_2 3 564.7598876953125 2 564.259445 1126.50434 0.047667 2.6897E-05 -0.062789 -3.5429E-05 -0.015122 -8.5325E-06 564.2592966020466 20.169 0.65351 23.565 23.275 23.928 3.3963 116 66 2 0 0 0 0.23293 3 2025 1989;2025;2061 18.146 8.7989 1 78785 13793 5336 8835 8841 16954;16955;16956 16955 -0.05385509947177525 IIDHHDNTY 9 Unmodified _IIDHHDNTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_3 4 564.7607421875 2 564.259445 1126.50434 -0.33259 -0.00018767 0.50712 0.00028615 0.17453 9.848E-05 564.2597018345006 20.261 0.6824 23.61 23.371 24.054 3.3496 90 58 2 0 0 0 0.43153 1 2067 2067 6.2058 1.8765 1 60870 13794 5336 8835 8841 16957 16957 -0.05385509947177525 IIEIKTKTKAT 11 Unmodified _IIEIKTKTKAT_ 0 0 0 HAL1_dup16610|chr12:45936858-45938207:-|2.4215405968510657|0.1648416824538323|3.88|151.0|46|3|sense HAL1_dup16610|chr12:45936858-45938207:-|2.4215405968510657|0.1648416824538323|3.88|151.0|46|3|sense HAL1_dup16610|chr12:45936858-45938207:-|2.4215405968510657|0.1648416824538323|3.88|151.0|46|3|sense MSMS UPN48_class_I_Rep_2 6 623.3898315429688 2 623.39247 1244.77039 NaN NaN NaN NaN NaN NaN NaN 103.2 1 106.91 106.41 107.41 3.7108 0 0 0 0.38417 1 24430 24430 4.897 1.9018 1 13795 7823 8836 8842 16958 16958 0.15779360842611823 IIEKCMANDYL 11 Unmodified _IIEKCMANDYL_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 438.54803466796875 3 438.214041 1311.62029 -0.29605 -0.00012973 0.0059639 2.6135E-06 -0.29009 -0.00012712 438.2140482123644 61.063 0.55087 64.328 64.184 64.735 3.2654 73 43 2 0 0 0 0.57454 1 14312 14312 5.8681 0.46543 1 126210 + 13796 19719 8837 8843 16959 16959 -0.02305070482998417 IIEMINFLQG 10 Unmodified _IIEMINFLQG_ 0 0 0 L1M4_dup7114|chr6:158968956-158970541:-|1.1296079042649496|0.2199212004935362|2.36|150.0|8|1|sense L1M4_dup7114|chr6:158968956-158970541:-|1.1296079042649496|0.2199212004935362|2.36|150.0|8|1|sense L1M4_dup7114|chr6:158968956-158970541:-|1.1296079042649496|0.2199212004935362|2.36|150.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.3204956054688 2 589.317917 1176.62128 0.3338 0.00019671 1.8309 0.001079 2.1647 0.0012757 589.3188966809238 47.07 0.45856 50.314 50.108 50.566 3.2439 39 28 2 0 0 0 0.56078 1 10125 10125 3.2813 0.28607 1 95404 13797 8905 8838 8844 16960 16960 0.0400351194821269 IIENNHILYL 10 Unmodified _IIENNHILYL_ 0 0 0 ENST00000489652.1_1_3:122255723-122264321:-|nuORF;nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9 ENST00000489652.1_1_3:122255723-122264321:-|nuORF ENST00000489652.1_1_3:122255723-122264321:-|nuORF MSMS UPN48_class_I_Rep_3 7 621.3489990234375 2 621.348063 1240.68157 NaN NaN NaN NaN NaN NaN NaN 40.443 1 44.094 43.594 44.594 3.6509 0 0 0 0.53105 1 7192 7192 1.6526 0.17072 1 13798 3093 8839 8845 16961 16961 0.07085945602943866 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 599.0479125976562 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 81.489 1 81.489 80.989 81.989 0 0 0 0 0.53105 1 19246 19246 1.4819 0 1 13799 10678 8840 8846 16962 16962 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 599.3721923828125 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 94.573 1 94.573 94.073 95.073 0 0 0 0 0.53105 1 22939 22939 1.4819 0 1 13800 10678 8840 8846 16963 16963 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 599.3728637695312 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 86.702 1 90.317 89.817 90.817 3.6153 0 0 0 0.53105 1 21659 21659 1.4819 0 1 13801 10678 8840 8846 16964 16964 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 599.3724365234375 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 87.121 1 90.758 90.258 91.258 3.6372 0 0 0 0.53105 1 21764 21764 1.4819 0 1 13802 10678 8840 8846 16965 16965 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 599.3731689453125 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 89.76 1 93.434 92.934 93.934 3.6738 0 0 0 0.53105 1 22444 22444 1.4819 0 1 13803 10678 8840 8846 16966 16966 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 599.3743896484375 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 90.077 1 93.767 93.267 94.267 3.6899 0 0 0 0.53105 1 22514 22514 1.4819 0 1 13804 10678 8840 8846 16967 16967 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 599.3729858398438 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 90.831 1 94.521 94.021 95.021 3.6899 0 0 0 0.53105 1 22683 22683 1.4819 0 1 13805 10678 8840 8846 16968 16968 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 599.3728637695312 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 90.838 1 94.528 94.028 95.028 3.6899 0 0 0 0.53105 1 22685 22685 1.4819 0 1 13806 10678 8840 8846 16969 16969 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 599.3734130859375 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 86.788 1 90.229 89.729 90.729 3.4407 0 0 0 0.53105 1 21581 21581 1.4819 0 1 13807 10678 8840 8846 16970 16970 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 599.37255859375 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 89.403 1 92.855 92.355 93.355 3.4525 0 0 0 0.53105 1 22212 22212 1.4819 0 1 13808 10678 8840 8846 16971 16971 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 599.3728637695312 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 92.082 1 95.547 95.047 96.047 3.4652 0 0 0 0.53105 1 22775 22775 1.4819 0 1 13809 10678 8840 8846 16972 16972 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 599.3721923828125 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 86.991 1 90.371 89.871 90.871 3.3801 0 0 0 0.53105 1 21801 21801 1.4819 0 1 13810 10678 8840 8846 16973 16973 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 599.3726806640625 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 87.535 1 90.922 90.422 91.422 3.3873 0 0 0 0.53105 1 21937 21937 1.4819 0 1 13811 10678 8840 8846 16974 16974 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 599.372802734375 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 89.631 1 93.028 92.528 93.528 3.3976 0 0 0 0.53105 1 22472 22472 1.4819 0 1 13812 10678 8840 8846 16975 16975 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 599.3728637695312 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 101.34 1 104.81 104.31 105.31 3.4671 0 0 0 0.53105 1 24986 24986 1.4819 0 1 13813 10678 8840 8846 16976 16976 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 599.3720703125 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 84.284 1 87.881 87.381 88.381 3.5973 0 0 0 0.53105 1 20177 20177 1.4819 0 1 13814 10678 8840 8846 16977 16977 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 599.3732299804688 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 88.939 1 92.562 92.062 93.062 3.6229 0 0 0 0.53105 1 21343 21343 1.4819 0 1 13815 10678 8840 8846 16978 16978 0.14100357007237108 IIEPKVVLRM 10 Unmodified _IIEPKVVLRM_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|15|3|sense MSMS UPN48_class_I_Rep_3 7 599.3719482421875 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 90.622 1 94.469 93.969 94.969 3.847 0 0 0 0.53105 1 21500 21500 1.4819 0 1 13816 10678 8840 8846 16979 16979 0.14100357007237108 IIETKKFKNFS 11 Unmodified _IIETKKFKNFS_ 0 0 0 REV__L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|59|2|sense REV__L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|59|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.2635192871094 3 452.262489 1353.76564 0.1364 6.1688E-05 0.976 0.00044141 1.1124 0.00050309 452.2629534106828 59.42 0.47222 62.943 62.598 63.07 3.5231 40 30 2 0 0 0 0.68132 1 12976 12976 0.40827 0.041592 1 141000 + 13817 30369 8841 8847 16980 16980 0.10290476699833562 IIFCDWLF 8 Unmodified _IIFCDWLF_ 0 0 0 L1MB7_dup407|chr1:41110296-41111179:-|2.137615404511651|0.3899280124938452|2.45|151.0|40|1|anti-sense L1MB7_dup407|chr1:41110296-41111179:-|2.137615404511651|0.3899280124938452|2.45|151.0|40|1|anti-sense L1MB7_dup407|chr1:41110296-41111179:-|2.137615404511651|0.3899280124938452|2.45|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_3 4 528.7481079101562 2 528.764789 1055.51502 NaN NaN NaN NaN NaN NaN NaN 79.629 1 82.924 82.424 83.424 3.295 0 0 0 0.40364 1 19913 19913 5.7604 0.52976 1 13818 10828 8842 8848 16981 16981 -0.01051198826462496 IIFCIPRVM 9 Unmodified _IIFCIPRVM_ 0 0 0 REV__MER41-int_dup30|chr1:37905431-37906573:+|1.478684448369047|0.0205985642954794|6.17|151.0|68|3|anti-sense REV__MER41-int_dup30|chr1:37905431-37906573:+|1.478684448369047|0.0205985642954794|6.17|151.0|68|3|anti-sense MSMS UPN47_class_I_Rep_3 4 546.3079833984375 2 546.308841 1090.60313 NaN NaN NaN NaN NaN NaN NaN 47.311 1 50.555 50.055 51.055 3.2439 0 0 0 0.39428 1 10199 10199 2.0598 0 1 + 13819 31291 8843 8849 16982 16982 0.06145098492493162 IIFDVLIMV 9 Unmodified _IIFDVLIMV_ 0 0 0 L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 532.3192138671875 2 531.817021 1061.61949 0.32821 0.00017455 0.3028 0.00016103 0.63101 0.00033558 531.8170019087654 82.648 0.12514 82.648 82.605 82.73 0 24 12 2 0 0 0 0.48414 1 19611 19611 2.3027 0 1 829100 13820 15032 8844 8850 16983 16983 0.09114502930265189 IIFDVLIMV 9 Unmodified _IIFDVLIMV_ 0 0 0 L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 531.817021 1061.61949 0.32821 0.00017455 0.3028 0.00016103 0.63101 0.00033558 531.8170019087654 82.648 0.12514 82.648 82.605 82.73 0 -0.070286 0.0001507 NaN 2.3027 24 12 2 NaN NaN NaN NaN 0 NaN NaN 0 829100 13821 15032 8844 8850 0.09114502930265189 IIFDVLIMV 9 Unmodified _IIFDVLIMV_ 0 0 0 L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 531.817021 1061.61949 0.38183 0.00020307 0.2871 0.00015269 0.66894 0.00035575 531.8171173794542 79.197 0.43768 82.643 82.279 82.716 3.4456 -0.075638 0.00013401 NaN 2.3027 53 33 2 NaN NaN NaN NaN 0 NaN NaN 0 123130 13822 15032 8844 8850 0.09114502930265189 IIFDVLIMV 9 Unmodified _IIFDVLIMV_ 0 0 0 L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense L1PB1_dup12334|chr19:24083674-24084145:+|1.754304133594594|0.1623634661576167|3.43|151.0|37|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 531.817021 1061.61949 0.35238 0.0001874 0.32653 0.00017366 0.67891 0.00036106 531.81705885935 79.355 0.078712 82.89 82.84 82.919 3.5352 0.17181 0.00017594 NaN 2.3027 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 225910 13823 15032 8844 8850 0.09114502930265189 IIFETPLRV 9 Unmodified _IIFETPLRV_ 0 0 0 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MSMS UPN47_class_I_Rep_1 2 544.3306274414062 2 544.329142 1086.64373 NaN NaN NaN NaN NaN NaN NaN 67.1 1 70.461 69.961 70.961 3.3611 0 0 0 0.34878 1 16115 16115 8.1555 2.4237 1 13824 2096 8845 8851 16984 16984 0.10387479408132094 IIFETPLRV 9 Unmodified _IIFETPLRV_ 0 0 0 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 544.80322265625 2 544.329142 1086.64373 0.38534 0.00020975 0.5374 0.00029252 0.92275 0.00050228 544.3295584123977 66.8 0.3347 70.161 69.92 70.255 3.3611 34 24 2 0 0 0 0.10301 1 15991 15991 18.146 1.2041 1 76826 13825 2096 8845 8851 16985 16985 0.10387479408132094 IIFETPLRV 9 Unmodified _IIFETPLRV_ 0 0 0 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 544.3284912109375 2 544.329142 1086.64373 0.34733 0.00018906 0.36782 0.00020022 0.71515 0.00038928 544.3295849309097 67.166 0.24474 70.43 70.211 70.456 3.2636 33 18 2 0 0 0 0.17897 1 16184 16184 22.736 5.6234 1 58943 13826 2096 8845 8851 16986 16986 0.10387479408132094 IIFETPLRV 9 Unmodified _IIFETPLRV_ 0 0 0 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 544.3297119140625 2 544.329142 1086.64373 0.34884 0.00018988 0.44652 0.00024305 0.79535 0.00043293 544.3295405040808 67.224 0.18121 70.488 70.456 70.637 3.2636 19 13 2 0 0 0 0.14216 1 16221 16221 26.268 8.1218 1 62259 13827 2096 8845 8851 16987 16987 0.10387479408132094 IIFETPLRV 9 Unmodified _IIFETPLRV_ 0 0 0 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 544.329833984375 2 544.329142 1086.64373 0.42466 0.00023115 -0.0078039 -4.2479E-06 0.41685 0.00022691 544.3292553468951 67.172 0.32095 70.363 70.32 70.641 3.1914 30 23 2 0 0 0 0.31407 1 16282 16282 13.042 3.6593 1 84270 13828 2096 8845 8851 16988 16988 0.10387479408132094 IIFGEISSSI 10 Unmodified _IIFGEISSSI_ 0 0 0 L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|46|2|anti-sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|46|2|anti-sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|46|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 533.2944946289062 2 533.294965 1064.57538 0.4332 0.00023102 -0.29085 -0.00015511 0.14234 7.591E-05 533.2946256300575 81.523 0.50618 84.846 84.642 85.149 3.3231 77 52 2 0 0 0 0.46161 1 20406 20406 14.838 0.25658 1 128310 13829 10277 8846 8852 16989 16989 0.04567190037619184 IIFGEISSSI 10 Unmodified _IIFGEISSSI_ 0 0 0 L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|46|2|anti-sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|46|2|anti-sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|46|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 533.294965 1064.57538 0.40366 0.00021527 -0.14792 -7.8886E-05 0.25574 0.00013638 533.29466131992 81.301 0.28255 84.788 84.601 84.884 3.4874 -0.028917 0.00012177 NaN 14.838 31 27 2 NaN NaN NaN NaN 0 NaN NaN 0 80752 13830 10277 8846 8852 0.04567190037619184 IIFHCMCR 8 Unmodified _IIFHCMCR_ 0 0 0 L1MB3_dup6622|chr7:45055696-45056372:-|2.56880545408774|0.032847231465607|6.29|151.0|30|1|anti-sense L1MB3_dup6622|chr7:45055696-45056372:-|2.56880545408774|0.032847231465607|6.29|151.0|30|1|anti-sense L1MB3_dup6622|chr7:45055696-45056372:-|2.56880545408774|0.032847231465607|6.29|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_2 3 511.7645568847656 2 511.740268 1021.46598 NaN NaN NaN NaN NaN NaN NaN 20.951 1 24.358 23.858 24.858 3.4074 0 0 0 0.40738 1 2263 2263 0.79363 0 1 13831 10442 8847 8853 16990 16990 -0.04389133658708033 IIFHKQKR 8 Unmodified _IIFHKQKR_ 0 0 0 REV__HAL1b_dup2321|chr7:74191588-74191707:-|1.897473817208198|0.4526116082950202|2.07|151.0|6|1|anti-sense REV__HAL1b_dup2321|chr7:74191588-74191707:-|1.897473817208198|0.4526116082950202|2.07|151.0|6|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 535.3355712890625 2 535.335093 1068.65563 0.49382 0.00026436 0.083277 4.4581E-05 0.5771 0.00030894 535.3350407894515 109.3 0.45529 112.91 112.76 113.22 3.6046 141 56 3 0 0 0 0.82752 1 27006 27006 8.5933 3.3626 1 6436700 + 13832 23449 8848 8854 16991 16991 0.12405140941996251 IIFIDILRRS 10 Unmodified _IIFIDILRRS_ 0 0 0 REV__ENSG00000154165|ENST00000284311|GPR15 REV__ENSG00000154165|ENST00000284311|GPR15 MULTI-MSMS UPN47_class_I_Rep_1 2 623.8909301757812 2 623.387522 1244.76049 0.55222 0.00034425 0.18349 0.00011439 0.73571 0.00045863 623.8893069134913 109.18 0.44611 112.78 112.61 113.05 3.6046 68 45 2 0 0 0 0.54466 1 26965 26965 6.2058 0.47393 1 3156400 + 13833 19728 8849 8855 16992 16992 0.14790217627887614 IIFYCVYWILL 11 Unmodified _IIFYCVYWILL_ 0 0 0 L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|161|1|anti-sense;L1PA2_dup1805|chr5:170239777-170245795:-|3.361788922029873|0.451336868346228|2.9|151.0|204|1|anti-sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|205|1|anti-sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|161|1|anti-sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|161|1|anti-sense MSMS UPN47_class_I_Rep_3 4 482.60260009765625 3 482.601565 1444.78287 NaN NaN NaN NaN NaN NaN NaN 30.749 1 34.06 33.56 34.56 3.3116 0 0 0 0.38417 1 5149 5149 1.4551 0 1 13834 14185 8850 8856 16993 16993 0.07826680981293066 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 491.79595947265625 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 64.16 1 67.617 67.117 68.117 3.4578 0 0 0 0.38478 1 14502 14502 4.3292 1.7518 1 13835 33371 8851 8857 16994 16994 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 491.79559326171875 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 64.391 1 67.845 67.345 68.345 3.4541 0 0 0 0.38478 1 14572 14572 4.3292 0 1 13836 33371 8851 8857 16995 16995 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 491.79547119140625 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 64.107 1 67.582 67.082 68.082 3.4743 0 0 0 0.38478 1 14465 14465 4.3292 1.7518 1 13837 33371 8851 8857 16996 16996 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 491.79583740234375 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 64.296 1 67.771 67.271 68.271 3.4743 0 0 0 0.38478 1 14524 14524 4.3292 0 1 13838 33371 8851 8857 16997 16997 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 491.7967224121094 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 63.722 1 67.231 66.731 67.731 3.5091 0 0 0 0.38478 1 14270 14270 4.3292 1.7518 1 13839 33371 8851 8857 16998 16998 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 491.7959289550781 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 63.896 1 67.404 66.904 67.904 3.5083 0 0 0 0.36505 1 14322 14322 7.2892 2.96 1 13840 33371 8851 8857 16999 16999 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 491.7765808105469 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 64.128 1 67.636 67.136 68.136 3.5083 0 0 0 0.38478 1 14393 14393 4.3292 1.7518 1 13841 33371 8851 8857 17000 17000 0.08312395388566074 IIGLEELPV 9 Unmodified _IIGLEELPV_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|14|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 491.795654296875 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 64.181 1 67.689 67.189 68.189 3.5083 0 0 0 0.38478 1 14409 14409 4.3292 1.7518 1 13842 33371 8851 8857 17001 17001 0.08312395388566074 IIGSSPSCSKD 11 Unmodified _IIGSSPSCSKD_ 0 0 0 REV__ENSG00000197343|ENST00000252713|ZNF655 REV__ENSG00000197343|ENST00000252713|ZNF655 MULTI-MSMS UPN47_class_I_Rep_1 2 547.262939453125 2 547.263339 1092.51212 0.014566 7.9716E-06 -2.1677 -0.0011863 -2.1531 -0.0011783 547.2623540365079 40.056 0.51176 43.723 43.413 43.925 3.6668 67 36 3 0 0 0 0.32209 1 7915 7915 13.615 2.8154 1 111980 + 13843 21076 8852 8858 17002 17002 -0.030431187419026173 IIHAGKKL 8 Unmodified _IIHAGKKL_ 0 0 0 nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91 nc|ENSG00000167232|Q05481-2|ZNF91 nc|ENSG00000167232|Q05481-2|ZNF91 MULTI-SECPEP UPN47_class_I_Rep_3 4 440.7994079589844 2 440.292362 878.570172 -0.36455 -0.00016051 -2.3429 -0.0010316 -2.7074 -0.0011921 440.292369424659 55.334 0.095196 58.511 58.448 58.543 3.1779 7 5 2 0 0 0 0.72333 1 12641 12641 0.79363 0 1 33992 13844 4293 8853 8859 17003 17003 0.12602975756306023 IIHAVIQEY 9 Unmodified _IIHAVIQEY_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS UPN46_class_I_Rep_3 1 543.2028198242188 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 52.596 1 52.596 52.096 53.096 0 0 0 0 0.36505 1 11254 11254 7.2892 1.5288 1 13845 1030 8854 8860 17004 17004 0.05278315994382865 IIHPHKKY 8 Unmodified _IIHPHKKY_ 0 0 0 L1MC4a_dup9647|chr19:45862060-45862279:-|1.83654119549981|0.1655731015989622|3.47|151.0|12|3|sense L1MC4a_dup9647|chr19:45862060-45862279:-|1.83654119549981|0.1655731015989622|3.47|151.0|12|3|sense L1MC4a_dup9647|chr19:45862060-45862279:-|1.83654119549981|0.1655731015989622|3.47|151.0|12|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 518.3085327148438 2 518.308544 1034.60253 0.30639 0.00015881 -0.10837 -5.6169E-05 0.19802 0.00010264 518.3084324180597 43.137 0.068378 43.137 43.097 43.165 0 11 5 4 0 0 0 0.82752 1 8591 8591 2.5775 1.7838 1 1310100 13846 11636 8855 8861 17005 17005 0.08661763159329894 IIIHWYLIM 9 Unmodified _IIIHWYLIM_ 0 0 0 REV__L1MC1_dup8388|chr10:859446-860224:+|1.1254608506396813|0.0185032587635505|5.93|150.0|34|1|anti-sense REV__L1MC1_dup8388|chr10:859446-860224:+|1.1254608506396813|0.0185032587635505|5.93|150.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 601.342041015625 2 601.343738 1200.67292 NaN NaN NaN NaN NaN NaN NaN 83.307 1 86.988 86.488 87.488 3.6814 0 0 0 0.39326 1 19795 19795 2.3027 1.1094 1 + 13847 26603 8856 8862 17006 17006 0.08061300432746066 IIIIIIIKLVK 11 Unmodified _IIIIIIIKLVK_ 0 0 0 REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|52|2|sense REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|52|2|sense MSMS UPN46_class_I_Rep_3 1 639.9754638671875 2 639.977985 1277.94142 NaN NaN NaN NaN NaN NaN NaN 46.884 1 46.884 46.384 47.384 0 0 0 0 0.38417 1 9647 9647 0 0 1 + 13848 25326 8857 8863 17007 17007 0.31356342951858096 IIIILALQLQP 11 Unmodified _IIIILALQLQP_ 0 0 0 LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|10|2|sense LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|10|2|sense LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 617.8360595703125 2 617.910299 1233.80605 NaN NaN NaN NaN NaN NaN NaN 45.562 1 45.562 45.062 46.062 0 0 0 0 0.38417 1 9275 9275 0.30703 0.30703 1 13849 15556 8858 8864 17008 17008 0.19849443090288332 IIILYTYLEK 10 Unmodified _IIILYTYLEK_ 0 0 0 L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.8787231445312 2 634.878665 1267.74278 0.51363 0.0003261 -0.72597 -0.0004609 -0.21234 -0.00013481 634.8785188768856 103.84 0.5517 107.36 106.94 107.49 3.5205 114 81 3 0 0 0 0.56333 1 25498 25498 1.4819 0 1 86348000 13850 12647 8859 8865 17009 17009 0.11961457582356161 IIILYTYLEK 10 Unmodified _IIILYTYLEK_ 0 0 0 L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.878173828125 2 634.878665 1267.74278 0.51351 0.00032601 -0.86141 -0.00054689 -0.3479 -0.00022087 634.8782161356512 104.28 0.17621 107.8 107.73 107.91 3.5205 37 28 2 0 0 0 0.56333 1 25559 25559 1.4819 0 1 41384000 13851 12647 8859 8865 17010 17010 0.11961457582356161 IIILYTYLEK 10 Unmodified _IIILYTYLEK_ 0 0 0 L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 634.878665 1267.74278 0.51363 0.0003261 -0.72597 -0.0004609 -0.21234 -0.00013481 634.8785188768856 103.84 0.5517 107.36 106.94 107.49 3.5205 -0.086965 5.1993E-05 NaN 1.4819 114 81 3 NaN NaN NaN NaN 0 NaN NaN 0 86348000 13852 12647 8859 8865 0.11961457582356161 IIILYTYLEK 10 Unmodified _IIILYTYLEK_ 0 0 0 L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 634.878665 1267.74278 0.43217 0.00027438 -2.0555 -0.001305 -1.6234 -0.0010306 634.8779691658299 104.25 0.035995 107.88 107.84 107.88 3.6209 0.038525 -0.0014899 NaN 1.4819 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 20851000 13853 12647 8859 8865 0.11961457582356161 IIILYTYLEK 10 Unmodified _IIILYTYLEK_ 0 0 0 L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense L1ME3A_dup14380|chr18:62317936-62318829:+|1.2991756070536462|0.0082464862239613|7.3|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 634.878665 1267.74278 0.49738 0.00031578 -1.2405 -0.00078759 -0.74315 -0.00047181 634.8782662696458 103.84 0.055084 107.54 107.49 107.54 3.6991 0.086965 -0.00060137 NaN 1.4819 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 40023000 13854 12647 8859 8865 0.11961457582356161 IIIPLPTTLF 10 Unmodified _IIIPLPTTLF_ 0 0 0 REV__L1ME3G_dup7409|chr7:140828610-140829111:-|1.1820811242806024|0.0370750421188429|4.99|151.0|26|1|anti-sense REV__L1ME3G_dup7409|chr7:140828610-140829111:-|1.1820811242806024|0.0370750421188429|4.99|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 564.3600463867188 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 81.619 1 85.275 84.775 85.775 3.6567 0 0 0 0.53105 1 19378 19378 1.4819 0.79152 1 + 13855 28206 8860 8866 17011 17011 0.14190107244780847 IIIVYIWRY 9 Unmodified _IIIVYIWRY_ 0 0 0 L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 619.87109375 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 102.42 1 102.42 101.92 102.92 0 0 0 0 0.4007 1 24993 24993 0.52476 0.066424 1 13856 9990 8861 8867 17012 17012 0.11296331713219843 IIIVYIWRY 9 Unmodified _IIIVYIWRY_ 0 0 0 L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8692626953125 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 88.609 1 92.266 91.766 92.766 3.6563 0 0 0 0.40038 1 22160 22160 0.6015 0.076735 1 13857 9990 8861 8867 17013 17013 0.11296331713219843 IIIVYIWRY 9 Unmodified _IIIVYIWRY_ 0 0 0 L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8700561523438 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 88.071 1 91.799 91.299 92.299 3.7279 0 0 0 0.40038 1 20965 20965 0.6015 0 1 13858 9990 8861 8867 17014 17014 0.11296331713219843 IIIVYIWRY 9 Unmodified _IIIVYIWRY_ 0 0 0 L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense L1MA6_dup4733|chr15:59084479-59084859:-|1.2269243776119363|0.380462322275414|1.69|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_3 7 619.8685302734375 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 87.662 1 91.452 90.952 91.952 3.7905 0 0 0 0.40038 1 20799 20799 0.6015 0.076735 1 13859 9990 8861 8867 17015 17015 0.11296331713219843 IIKLCWYNF 9 Unmodified _IIKLCWYNF_ 0 0 0 REV__L1ME1_dup11423|chr6:37974960-37976257:-|2.378853172626077|0.0156845884651138|7.24|151.0|8|1|sense REV__L1ME1_dup11423|chr6:37974960-37976257:-|2.378853172626077|0.0156845884651138|7.24|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 600.3173828125 2 600.31772 1198.62089 NaN NaN NaN NaN NaN NaN NaN 64.544 1 68.018 67.518 68.518 3.4743 0 0 0 0.39428 1 14600 14600 2.0598 0 1 + 13860 27577 8862 8868 17016 17016 0.029521370189968366 IIKLLKVIPEK 11 Unmodified _IIKLLKVIPEK_ 0 0 0 L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|24|1|sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|24|1|sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|24|1|sense MSMS UPN47_class_I_Rep_3 4 647.445556640625 2 647.447049 1292.87954 NaN NaN NaN NaN NaN NaN NaN 108.2 1 111.74 111.24 112.24 3.5382 0 0 0 0.38417 1 26458 26458 0.26902 0.26902 1 13861 15221 8863 8869 17017 17017 0.24481991532752545 IIKLSYAY 8 Unmodified _IIKLSYAY_ 0 0 0 REV__Tigger17a_dup1442|chr10:63296309-63296761:-|1.1589030630201982|0.0119835701864774|6.6|151.0|5|2|sense REV__Tigger17a_dup1442|chr10:63296309-63296761:-|1.1589030630201982|0.0119835701864774|6.6|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 485.77227783203125 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 116.18 1 116.18 115.68 116.68 0 0 0 0 0.40746 1 28750 28750 0.69038 0 1 + 13862 32600 8864 8870 17018 17018 0.0675243007968902 IIKVGGERF 9 Unmodified _IIKVGGERF_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2;ENST00000409926.2_1_22:25083578-25083761:+|nuORF nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-SECPEP UPN46_class_I_Rep_3 1 509.80621337890625 2 509.805834 1017.59712 0.30143 0.00015367 -0.3651 -0.00018613 -0.063675 -3.2462E-05 509.805597994035 42.62 0.18808 42.62 42.546 42.734 0 16 13 2 0 0 0 0.10927 1 8454 8454 16.149 0 1 165160 13863 3060 8865 8871 17019 17019 0.08902039576855714 IIKWLPALVIR 11 Unmodified _IIKWLPALVIR_ 0 0 0 REV__L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|106|3|anti-sense REV__L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|106|3|anti-sense MSMS UPN48_class_I_Rep_1 5 441.29730224609375 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 52.069 1 55.591 55.091 56.091 3.5227 0 0 0 0.38417 1 10798 10798 0.50596 0.41111 1 + 13864 25777 8866 8872 17020 17020 0.21696544455380717 IILAMHSLGV 10 Unmodified _IILAMHSLGV_ 0 0 0 REV__L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|38|1|anti-sense REV__L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|38|1|anti-sense MSMS UPN46_class_I_Rep_3 1 527.31396484375 2 527.309895 1052.60524 NaN NaN NaN NaN NaN NaN NaN 36.312 1 36.312 35.812 36.812 0 0 0 0 0.53105 1 6717 6717 1.4819 0.68827 1 + 13865 24038 8867 8873 17021 17021 0.08103850501970555 IILFAQLWQ 9 Unmodified _IILFAQLWQ_ 0 0 0 REV__L1MEc_dup17531|chr20:3364101-3364530:-|1.3433784874354306|0.0512528940698274|4.71|150.0|7|2|sense REV__L1MEc_dup17531|chr20:3364101-3364530:-|1.3433784874354306|0.0512528940698274|4.71|150.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 566.7813720703125 2 566.331685 1130.64882 NaN NaN NaN NaN NaN NaN NaN 74.714 1 77.961 77.461 78.461 3.2464 0 0 0 0.40038 1 18505 18505 0.6015 0.076735 1 + 13866 28413 8868 8874 17022 17022 0.08871783270751621 IILFQQEEL 9 Unmodified _IILFQQEEL_ 0 0 0 REV__ENSG00000130226|ENST00000377770|DPP6 REV__ENSG00000130226|ENST00000377770|DPP6 MULTI-MSMS UPN47_class_I_Rep_3 4 567.3298950195312 2 566.816064 1131.61758 0.48054 0.00027238 -0.63038 -0.00035731 -0.14984 -8.4929E-05 566.8158751981431 84.604 0.37245 87.966 87.69 88.063 3.3615 77 46 2 0 0 0 0.31407 1 21195 21195 13.042 0 1 150690 + 13867 18932 8869 8875 17023 17023 0.057031654459933634 IILFRVPWLL 10 Unmodified _IILFRVPWLL_ 0 0 0 REV__L1MA4A_dup987|chr3:18296682-18298709:+|4.200641334897241|0.0085071587722244|8.95|149.0|114|2|anti-sense REV__L1MA4A_dup987|chr3:18296682-18298709:+|4.200641334897241|0.0085071587722244|8.95|149.0|114|2|anti-sense MSMS UPN48_class_I_Rep_2 6 635.4080810546875 2 635.407727 1268.8009 NaN NaN NaN NaN NaN NaN NaN 79.543 1 83.176 82.676 83.676 3.6331 0 0 0 0.53105 1 18903 18903 0.45834 0 1 + 13868 25354 8870 8876 17024 17024 0.17725184018331674 IILGLSVRVFL 11 Unmodified _IILGLSVRVFL_ 0 0 0 MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|7|2|sense MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|7|2|sense MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 615.4036254882812 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 84.079 1 87.807 87.307 88.307 3.7281 0 0 0 0.38417 1 19948 19948 3.2813 1.7994 1 13869 16507 8871 8877 17025 17025 0.1854857629309663 IILHRTGK 8 Unmodified _IILHRTGK_ 0 0 0 L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|31|3|sense;L1PB1_dup11367|chr15:56935481-56937363:-|3.06616764220481|0.0203702731347322|7.23|151.0|30|2|sense L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|31|3|sense L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|31|3|sense MSMS UPN48_class_I_Rep_1 5 469.3013610839844 2 469.300719 936.586885 NaN NaN NaN NaN NaN NaN NaN 85.1 1 88.706 88.206 89.206 3.6059 0 0 0 0.40738 1 20356 20356 0.79363 0 1 13870 15019 8872 8878 17026 17026 0.11605476642284884 IILIPPLRWLD 11 Unmodified _IILIPPLRWLD_ 0 0 0 REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MSMS UPN47_class_I_Rep_1 2 450.2853698730469 3 450.283224 1347.82784 NaN NaN NaN NaN NaN NaN NaN 87.515 1 91.152 90.652 91.652 3.6372 0 0 0 0.38417 1 21869 21869 0.45452 0.29519 1 + 13871 20382 8873 8879 17027 17027 0.167842478388593 IILLRYLFF 9 Unmodified _IILLRYLFF_ 0 0 0 L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|41|2|sense L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|41|2|sense L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|41|2|sense MSMS UPN48_class_I_Rep_3 7 599.3727416992188 2 599.373352 1196.73215 NaN NaN NaN NaN NaN NaN NaN 84.275 1 88.003 87.503 88.503 3.7281 0 0 0 0.40038 1 19998 19998 0.6015 0 1 13872 11227 8874 8880 17028 17028 0.1416551971856279 IILMPHHV 8 Unmodified _IILMPHHV_ 0 0 0 ENST00000419794.1_1_9:34318953-34319253:+|nuORF;ENSG00000149257|ENST00000358171|SERPINH1 ENST00000419794.1_1_9:34318953-34319253:+|nuORF ENST00000419794.1_1_9:34318953-34319253:+|nuORF MSMS UPN47_class_I_Rep_3 4 480.2804260253906 2 480.278398 958.542243 NaN NaN NaN NaN NaN NaN NaN 19.495 1 22.846 22.346 23.346 3.3514 0 0 0 0.40581 1 1833 1833 2.8892 0 1 13873 3533 8875 8881 17029 17029 0.061313295045806626 IILMYKYL 8 Unmodified _IILMYKYL_ 0 0 0 REV__MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|23|1|anti-sense REV__MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.8110961914062 2 528.811739 1055.60893 -0.11657 -6.1645E-05 0.27502 0.00014544 0.15845 8.379E-05 528.811550024509 28.242 0.42448 32.008 31.843 32.267 3.7662 43 33 2 0 0 0 0.82752 1 4344 4344 5.7604 0 1 52963 + 13874 31072 8876 8882 17030 17030 0.08334520275820978 IILMYKYL 8 Unmodified _IILMYKYL_ 0 0 0 REV__MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|23|1|anti-sense REV__MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.8102416992188 2 528.811739 1055.60893 -0.20505 -0.00010843 0.16161 8.5462E-05 -0.043437 -2.297E-05 528.8116305960244 28.396 0.45233 31.894 31.702 32.154 3.4986 53 37 2 0 0 0 0.82752 1 4399 4399 2.5775 0 1 49776 + 13875 31072 8876 8882 17031 17031 0.08334520275820978 IILQQCGVRMT 11 Unmodified _IILQQCGVRMT_ 0 0 0 Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|23|3|sense Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|23|3|sense Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 421.56341552734375 3 421.230026 1260.66825 NaN NaN NaN NaN NaN NaN NaN 91.195 1 94.821 94.321 95.321 3.626 0 0 0 0.38417 1 21914 21914 5.8681 0.46543 1 13876 33424 8877 8883 17032 17032 0.04834048227689891 IIMIKYYI 8 Unmodified _IIMIKYYI_ 0 0 0 REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|60|3|sense REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|60|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.31298828125 2 528.811739 1055.60893 -0.27671 -0.00014633 -0.17815 -9.4208E-05 -0.45486 -0.00024053 528.8116543014431 28.641 0.449 31.975 31.803 32.252 3.3337 63 37 2 0 0 0 0.82752 1 4535 4535 2.5775 0 1 45231 + 13877 24616 8878 8884 17033 17033 0.0833452027579824 IIMPHNIYL 9 Oxidation (M) _IIM(Oxidation (M))PHNIYL_ IIM(1)PHNIYL IIM(46)PHNIYL 0 0 1 ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1 ENST00000469449.1_1_2:219252516-219252801:+|nuORF ENST00000469449.1_1_2:219252516-219252801:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 565.3074951171875 2 565.307352 1128.60015 0.38122 0.0002155 -0.19415 -0.00010975 0.18707 0.00010575 565.3071904010677 60.772 0.38074 60.772 60.651 61.032 0 99 47 3 0 0 0 0.056917 1 13490 13490 46.021 13.235 1 916010 13878 801 8879 8885 17034 17034 11 0.04099546639326945 IINEIHQTF 9 Unmodified _IINEIHQTF_ 0 0 0 REV__L1MEd_dup764|chr1:96735672-96736457:+|2.006250710781941|0.0215003088235238|6.54|151.0|44|2|anti-sense REV__L1MEd_dup764|chr1:96735672-96736457:+|2.006250710781941|0.0215003088235238|6.54|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.8008422851562 2 557.798206 1113.58186 NaN NaN NaN NaN NaN NaN NaN 70.246 1 73.782 73.282 74.282 3.5359 0 0 0 0.35904 1 16330 16330 7.609 1.4032 1 + 13879 28587 8880 8886 17035 17035 0.02961127988987755 IINLSNRK 8 Unmodified _IINLSNRK_ 0 0 0 L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2955017089844 2 479.295633 956.576714 0.26479 0.00012691 -0.11356 -5.4431E-05 0.15123 7.2484E-05 479.29546899047676 97.805 0.14905 97.805 97.722 97.871 0 26 17 2 0 0 0 0.82752 1 23805 23805 25.399 3.6527 1 127390 13880 13831 8881 8887 17036 17036 0.09668868917037798 IINLSNRK 8 Unmodified _IINLSNRK_ 0 0 0 L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 479.295633 956.576714 0.26479 0.00012691 -0.11356 -5.4431E-05 0.15123 7.2484E-05 479.29546899047676 97.805 0.14905 97.805 97.722 97.871 0 -0.0064185 -0.00018014 NaN 25.399 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 127390 13881 13831 8881 8887 0.09668868917037798 IINLSNRK 8 Unmodified _IINLSNRK_ 0 0 0 L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|8|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 479.295633 956.576714 0.2429 0.00011642 0.26814 0.00012852 0.51104 0.00024494 479.2954833485582 94.082 0.40247 97.818 97.598 98.001 3.736 0.0064185 0.00018576 NaN 25.399 62 52 2 NaN NaN NaN NaN 0 NaN NaN 0 69533 13882 13831 8881 8887 0.09668868917037798 IINNVSHLL 9 Unmodified _IINNVSHLL_ 0 0 0 REV__L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|68|3|anti-sense REV__L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|68|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.8027648925781 2 511.803291 1021.59203 -0.19276 -9.8653E-05 -0.11474 -5.8724E-05 -0.3075 -0.00015738 511.803022879563 40.495 0.63926 43.732 43.37 44.009 3.2372 48 38 2 0 0 0 0.44742 2 8068 8068;8097 5.2969 0.54088 1 66291 + 13883 27768 8882 8888 17037;17038 17037 0.08209735714228827 IIQLLRKKD 9 Unmodified _IIQLLRKKD_ 0 0 0 REV__nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 REV__nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 MSMS UPN48_class_I_Rep_1 5 564.2733764648438 2 563.868966 1125.72338 NaN NaN NaN NaN NaN NaN NaN 112.69 1 116.32 115.82 116.82 3.6321 0 0 0 0.40098 1 27351 27351 0.45834 0.18932 1 + 13884 19034 8883 8889 17039 17039 0.16554546082124943 IIRKICQQIP 10 Unmodified _IIRKICQQIP_ 0 0 0 REV__L1MCa_dup5934|chr13:112799700-112802062:+|7.730964559885049|0.1819003713539396|5.41|151.0|62|3|sense REV__L1MCa_dup5934|chr13:112799700-112802062:+|7.730964559885049|0.1819003713539396|5.41|151.0|62|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 606.8711547851562 2 606.368275 1210.722 0.50978 0.00030911 2.5088 0.0015213 3.0186 0.0018304 606.8714462602649 108.54 0.089844 112.08 112.02 112.11 3.5382 20 10 2 0 0 0 0.56033 1 26587 26587 3.5965 1.5367 1 7415600 + 13885 27219 8884 8890 17040 17040 0.12506588721726075 IIRQMCPTP 9 Unmodified _IIRQMCPTP_ 0 0 0 ENST00000510796.1_1_5:180683812-180687220:-|nuORF;ENST00000503005.1_1_5:180684052-180687322:-|nuORF;nc|ENSG00000183718|Q96A61-2|TRIM52;ENST00000514805.1_1_5:180686895-180687847:-|nuORF;ENSG00000183718|ENST00000688015|TRIM52;nc|ENSG00000183718|Q96A61|TRIM52 ENST00000510796.1_1_5:180683812-180687220:-|nuORF ENST00000510796.1_1_5:180683812-180687220:-|nuORF MSMS UPN48_class_I_Rep_2 6 529.7777709960938 2 529.777905 1057.54126 NaN NaN NaN NaN NaN NaN NaN 25.217 1 28.853 28.353 29.353 3.6363 0 0 0 0.39428 1 3041 3041 2.0598 0 1 13886 5013 8885 8891 17041 17041 0.014787470733608643 IISENVYNF 9 Unmodified _IISENVYNF_ 0 0 0 REV__L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|18|1|anti-sense REV__L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|18|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 550.3107299804688 2 549.776939 1097.53933 0.37905 0.0002084 -0.59778 -0.00032864 -0.21872 -0.00012025 549.7766697695827 67.852 0.29027 71.217 71.055 71.345 3.3646 33 19 2 0 0 0 0.12383 1 16327 16327 3.2813 0.28607 1 99065 + 13887 28139 8886 8892 17042 17042 -0.005542671392504417 IISENVYNF 9 Unmodified _IISENVYNF_ 0 0 0 REV__L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|18|1|anti-sense REV__L1ME3D_dup1829|chr7:75362792-75363153:-|2.1462139090114043|0.0533364607329966|5.33|150.0|18|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 549.776939 1097.53933 0.4762 0.0002618 0.31321 0.0001722 0.78942 0.000434 549.7770214187915 67.68 0.14739 71.188 71.096 71.243 3.5077 -0.014235 0.00078194 NaN 3.2813 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 120610 + 13888 28139 8886 8892 -0.005542671392504417 IISKLGNRI 9 Unmodified _IISKLGNRI_ 0 0 0 L1MC4_dup22277|chr18:13017518-13018408:-|1.267288212940067|0.0390856731270341|5.02|150.0|33|3|sense L1MC4_dup22277|chr18:13017518-13018408:-|1.267288212940067|0.0390856731270341|5.02|150.0|33|3|sense L1MC4_dup22277|chr18:13017518-13018408:-|1.267288212940067|0.0390856731270341|5.02|150.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 507.3268127441406 2 507.326934 1012.63931 0.23505 0.00011925 -0.28771 -0.00014596 -0.05266 -2.6716E-05 507.3267229197443 43.799 0.85507 47.561 47.183 48.038 3.7617 124 67 2 0 0 0 0.47197 1 8344 8344 3.5965 0 1 220370 13889 11464 8887 8893 17043 17043 0.1335001498522388 IISKLYFQKI 10 Unmodified _IISKLYFQKI_ 0 0 0 REV__BLACKJACK_dup2034|chr16:29195315-29196609:+|1.4087907340187142|0.1523500971120923|3.21|151.0|46|1|anti-sense REV__BLACKJACK_dup2034|chr16:29195315-29196609:+|1.4087907340187142|0.1523500971120923|3.21|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.8902587890625 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 106.17 1 109.88 109.38 110.38 3.7088 0 0 0 0.53105 1 26036 26036 3.2813 0.54611 1 + 13890 17254 8888 8894 17044 17044 0.1432858353912252 IISNWHWATT 10 Unmodified _IISNWHWATT_ 0 0 0 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 MULTI-MSMS UPN48_class_I_Rep_3 7 614.806884765625 2 614.809105 1227.60366 0.4728 0.00029068 -0.37326 -0.00022949 0.099537 6.1196E-05 614.8089542519751 32.678 0.37173 36.368 36.16 36.532 3.6896 68 45 2 0 0 0 0.56309 1 4977 4977 1.6526 0.17072 1 67342 13891 5460 8889 8895 17045 17045 -0.0010406726246401377 IISSLMLASL 10 Unmodified _IISSLMLASL_ 0 0 0 REV__L1ME1_dup25822|chr15:56955585-56956904:-|1.6417500362703066|0.0127937919981779|7.0|151.0|87|3|anti-sense REV__L1ME1_dup25822|chr15:56955585-56956904:-|1.6417500362703066|0.0127937919981779|7.0|151.0|87|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 524.3085327148438 2 524.309561 1046.60457 0.29978 0.00015718 -3.8861 -0.0020375 -3.5863 -0.0018803 524.3075027941026 75.325 0.36975 75.325 75.227 75.597 0 46 34 2 0 0 0 0.21236 1 17511 17511 49.933 9.9757 1 551980 + 13892 27708 8890 8896 17046 17046 0.08313011062250553 IISSVNRDI 9 Unmodified _IISSVNRDI_ 0 0 0 L1PB3_dup2931|chr14:20274769-20276406:+|1.5760282654575437|0.4715199062042515|1.74|151.0|90|2|anti-sense L1PB3_dup2931|chr14:20274769-20276406:+|1.5760282654575437|0.4715199062042515|1.74|151.0|90|2|anti-sense L1PB3_dup2931|chr14:20274769-20276406:+|1.5760282654575437|0.4715199062042515|1.74|151.0|90|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 509.3045349121094 2 508.790381 1015.56621 0.22094 0.00011241 0.2563 0.0001304 0.47725 0.00024282 508.7902466872045 54.068 0.58923 57.387 57.073 57.662 3.3187 49 35 2 0 0 0 0.32219 1 12218 12218 12.532 1.7076 1 122620 13893 15282 8891 8897 17047 17047 0.059048414719427456 IISTRRAN 8 Unmodified _IISTRRAN_ 0 0 0 L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|72|2|sense L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|72|2|sense L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|72|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 465.7774963378906 2 465.777608 929.540663 0.24624 0.00011469 -0.32432 -0.00015106 -0.078076 -3.6366E-05 465.7772694163816 73.263 0.40595 76.8 76.717 77.123 3.5373 68 44 2 0 0 0 0.82752 1 17164 17164 2.3027 0 1 119940 13894 14474 8892 8898 17048 17048 0.07307411740168845 IITKSLSASSL 11 Unmodified _IITKSLSASSL_ 0 0 0 REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|24|1|sense REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|24|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3173217773438 2 560.334621 1118.65469 0.33291 0.00018654 1.222 0.00068475 1.5549 0.00087128 560.335368008282 41.135 0.43944 44.781 44.53 44.97 3.6458 59 44 2 0 0 0 0.65271 1 7332 7332 2.9952 0 1 70610 + 13895 30495 8893 8899 17049 17049 0.10010836991773431 IITPPKLM 8 Unmodified _IITPPKLM_ 0 0 0 REV__L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|122|3|anti-sense REV__L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|122|3|anti-sense MSMS UPN47_class_I_Rep_1 2 456.7846374511719 2 456.782982 911.55141 NaN NaN NaN NaN NaN NaN NaN 19.944 1 23.555 23.055 24.055 3.6118 0 0 0 0.40746 1 1920 1920 0.69038 0 1 + 13896 24237 8894 8900 17050 17050 0.09209678070260452 IITSPVYSN 9 Unmodified _IITSPVYSN_ 0 0 0 REV__HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|214|1|anti-sense REV__HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|214|1|anti-sense MSMS UPN46_class_I_Rep_3 1 497.2670593261719 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 87.547 1 87.547 87.047 88.047 0 0 0 0 0.38478 1 20982 20982 4.3292 1.7518 1 + 13897 23892 8895 8901 17051 17051 0.02130347832053303 IIVLKKKKFCV 11 Unmodified _IIVLKKKKFCV_ 0 0 0 REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.2924499511719 3 440.292955 1317.85703 0.031141 1.3711E-05 -0.80278 -0.00035346 -0.77164 -0.00033975 440.29226395206626 55.454 1.6877 58.962 58.184 59.871 3.5082 396 116 4 0 0 0 0.68024 2 12079 12034;12079 0.50596 0.50596 1 656270 + 13898 32594 8896 8902 17052;17053 17053 0.21082068863461245 IIVLKKKKFCV 11 Unmodified _IIVLKKKKFCV_ 0 0 0 REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 440.292955 1317.85703 -0.21727 -9.5662E-05 -1.069 -0.00047069 -1.2863 -0.00056635 440.2924940137141 55.597 0.36309 58.907 58.674 59.037 3.3102 0.039342 -9.6052E-05 NaN 0.50596 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 53645 + 13899 32594 8896 8902 0.21082068863461245 IIVLKKKKFCV 11 Unmodified _IIVLKKKKFCV_ 0 0 0 REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 440.292955 1317.85703 0.2431 0.00010704 -1.0949 -0.0004821 -0.85184 -0.00037506 440.292170264726 55.377 2.2696 58.933 57.799 60.069 3.5559 0.065409 -0.00013027 NaN 0.50596 421 152 4 NaN NaN NaN NaN 0 NaN NaN 0 715850 + 13900 32594 8896 8902 0.21082068863461245 IIVLYKMVSLP 11 Unmodified _IIVLYKMVSLP_ 0 0 0 L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|47|1|anti-sense L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|47|1|anti-sense L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|47|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 638.93212890625 2 638.390885 1274.76722 0.63431 0.00040494 -0.99236 -0.00063351 -0.35805 -0.00022858 638.3898837758253 108.24 0.096619 111.77 111.72 111.82 3.5333 9 8 2 0 0 0 22.551 1 26219 26219 5.7319 0 1 3741700 13901 11191 8897 8903 17054 17054 0.14082394464253412 IIVMEYLA 8 Unmodified _IIVMEYLA_ 0 0 0 nc|ENSG00000177119|Q4KMQ2-4|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 MSMS UPN46_class_I_Rep_3 1 475.8167724609375 2 476.264622 950.514691 NaN NaN NaN NaN NaN NaN NaN 68.251 1 68.251 67.751 68.751 0 0 0 0 0.39167 1 15573 15573 11.114 0.93107 1 13902 16762 8898 8904 17055 17055 0.037453814536888785 IIWICFHFG 9 Unmodified _IIWICFHFG_ 0 0 0 REV__nc|ENSG00000136275|Q9H7B7|PKD1L1-AS1 REV__nc|ENSG00000136275|Q9H7B7|PKD1L1-AS1 MULTI-MSMS UPN47_class_I_Rep_2 3 568.2910766601562 2 568.291505 1134.56846 0.13306 7.5619E-05 -1.6286 -0.00092553 -1.4956 -0.00084991 568.2906592393135 43.406 0.75481 46.764 46.443 47.198 3.358 59 46 2 0 0 0 0.48414 1 8979 8979 2.3027 0.4585 1 74100 + 13903 31989 8899 8905 17056 17056 0.006555986760304222 IIWQSVGPF 9 Unmodified _IIWQSVGPF_ 0 0 0 REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF MSMS UPN48_class_I_Rep_1 5 523.7850952148438 2 523.78711 1045.55967 NaN NaN NaN NaN NaN NaN NaN 45.072 1 48.588 48.088 49.088 3.5162 0 0 0 0.38639 1 8653 8653 3.9444 0.66309 1 + 13904 21643 8900 8906 17057 17057 0.038709483112370435 IIYFHFNEN 9 Unmodified _IIYFHFNEN_ 0 0 0 REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|32|1|anti-sense REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.7918701171875 2 598.790381 1195.56621 NaN NaN NaN NaN NaN NaN NaN 43.388 1 46.746 46.246 47.246 3.358 0 0 0 0.39518 1 8945 8945 1.8442 0.36234 1 + 13905 30761 8901 8907 17058 17058 -0.023751585280251675 IIYVSDSITP 10 Unmodified _IIYVSDSITP_ 0 0 0 ENST00000486017.5_1_2:101541677-101580523:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2 ENST00000486017.5_1_2:101541677-101580523:+|nuORF ENST00000486017.5_1_2:101541677-101580523:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.1754760742188 2 554.300247 1106.58594 NaN NaN NaN NaN NaN NaN NaN 37.768 1 41.433 40.933 41.933 3.6652 0 0 0 0.53105 1 7205 7205 1.4819 0 1 13906 4474 8902 8908 17059 17059 0.036911726920379806 IKAFIPMT 8 Unmodified _IKAFIPMT_ 0 0 0 REV__AluSx_dup58024|chrX:1485139-1485438:-|1.3594171652971068|0.0028910892845366|8.88|151.0|6|2|sense REV__AluSx_dup58024|chrX:1485139-1485438:-|1.3594171652971068|0.0028910892845366|8.88|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 460.7824401855469 2 460.767332 919.52011 NaN NaN NaN NaN NaN NaN NaN 113.74 1 113.74 113.24 114.24 0 0 0 0 0.40746 1 28095 28095 0.69038 0 1 + 13907 17146 8903 8909 17060 17060 0.05713105036170418 IKAIAFHAAI 10 Unmodified _IKAIAFHAAI_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|9|1|sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 527.8231201171875 2 527.824027 1053.6335 NaN NaN NaN NaN NaN NaN NaN 70.515 1 70.515 70.015 71.015 0 0 0 0 0.53105 1 16208 16208 1.8442 0 1 + 13908 30325 8904 8910 17061 17061 0.10882916473542537 IKALEHSALA 10 Unmodified _IKALEHSALA_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1;ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|2|intron;ENST00000463285.5_1_1:41461708-41469783:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MSMS UPN48_class_I_Rep_2 6 526.8093872070312 2 526.808574 1051.60259 NaN NaN NaN NaN NaN NaN NaN 35.011 1 38.685 38.185 39.185 3.6735 0 0 0 0.53105 1 5716 5716 1.6526 0.32309 1 13909 4547 8905 8911 17062 17062 0.07885718368675043 IKAVPIAKLT 10 Unmodified _IKAVPIAKLT_ 0 0 0 REV__nc|ENSG00000162390|Q8WXI4|ACOT11 REV__nc|ENSG00000162390|Q8WXI4|ACOT11 MSMS UPN47_class_I_Rep_2 3 527.2589721679688 2 527.35516 1052.69577 NaN NaN NaN NaN NaN NaN NaN 73.968 1 77.273 76.773 77.773 3.3048 0 0 0 0.53105 1 18213 18213 1.4819 0.95714 1 + 13910 32032 8906 8912 17063 17063 0.17152642821906738 IKCFALECCM 10 Unmodified _IKCFALECCM_ 0 0 0 REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MSMS UPN48_class_I_Rep_2 6 580.7508544921875 2 580.752184 1159.48981 NaN NaN NaN NaN NaN NaN NaN 111.86 1 115.53 115.03 116.03 3.6666 0 0 0 0.53105 1 26622 26622 1.6526 0.85899 1 + 13911 19205 8907 8913 17064 17064 -0.08355081007221088 IKCFLKAK 8 Unmodified _IKCFLKAK_ 0 0 0 L1MC4_dup18423|chr13:32413371-32413690:-|1.6852070886852806|0.1994467578095977|3.08|151.0|20|3|anti-sense L1MC4_dup18423|chr13:32413371-32413690:-|1.6852070886852806|0.1994467578095977|3.08|151.0|20|3|anti-sense L1MC4_dup18423|chr13:32413371-32413690:-|1.6852070886852806|0.1994467578095977|3.08|151.0|20|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 475.295166015625 2 475.796423 949.578294 0.1609 7.6555E-05 -0.1651 -7.8553E-05 -0.004198 -1.9974E-06 475.7964553391588 41.615 0.16012 45.366 45.236 45.396 3.7508 22 16 2 0 0 0 0.72333 1 7596 7596 0.69038 0 1 77473 13912 11424 8908 8914 17065 17065 0.10148786681418187 IKCLFIALICK 11 Unmodified _IKCLFIALICK_ 0 0 0 REV__L1ME3D_dup3827|chr18:32114394-32114657:-|1.611788959045687|0.0681779641984705|4.56|151.0|10|3|sense REV__L1ME3D_dup3827|chr18:32114394-32114657:-|1.611788959045687|0.0681779641984705|4.56|151.0|10|3|sense MSMS UPN48_class_I_Rep_3 7 422.5818786621094 3 422.255512 1263.74471 NaN NaN NaN NaN NaN NaN NaN 98.91 1 102.79 102.29 103.29 3.8839 0 0 0 0.38417 1 23433 23433 1.2148 0.35046 1 + 13913 28149 8909 8915 17066 17066 0.12338471794964789 IKDDIATEL 9 Unmodified _IKDDIATEL_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 509.2769775390625 2 509.276772 1016.53899 NaN NaN NaN NaN NaN NaN NaN 64.531 1 67.887 67.387 68.387 3.3557 0 0 0 0.21832 1 15337 15337 15.248 2.206 1 13914 5495 8910 8916 17067 17067 0.031383131409029374 IKDDIATEL 9 Unmodified _IKDDIATEL_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_2 3 509.8057556152344 2 509.276772 1016.53899 0.085378 4.3481E-05 0.2719 0.00013847 0.35728 0.00018195 509.27676364935104 64.846 0.12259 68.102 68.077 68.2 3.2556 12 9 2 0 0 0 0.11355 1 15499 15499 31.268 7.2478 1 224560 13915 5495 8910 8916 17068 17068 0.031383131409029374 IKDDIATEL 9 Unmodified _IKDDIATEL_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 509.2769470214844 2 509.276772 1016.53899 NaN NaN NaN NaN NaN NaN NaN 64.983 1 68.162 67.662 68.662 3.1795 0 0 0 0.070158 1 15578 15578 31.268 3.6395 1 13916 5495 8910 8916 17069 17069 0.031383131409029374 IKDDIATEL 9 Unmodified _IKDDIATEL_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 509.276772 1016.53899 0.2095 0.00010669 -0.21302 -0.00010849 -0.0035186 -1.7919E-06 509.2761718534348 64.901 0.041473 68.257 68.219 68.261 3.3557 0.14651 -0.00050046 NaN 31.268 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 98021 13917 5495 8910 8916 0.031383131409029374 IKDDIATEL 9 Unmodified _IKDDIATEL_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 509.276772 1016.53899 0.25041 0.00012753 0.51258 0.00026105 0.76299 0.00038857 509.27663045635927 64.793 0.047897 67.973 67.949 67.997 3.1795 -0.13774 0.0002386 NaN 31.268 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 45219 13918 5495 8910 8916 0.031383131409029374 IKDTSQYNR 9 Unmodified _IKDTSQYNR_ 0 0 0 REV__L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|27|3|sense REV__L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.7909545898438 2 562.78837 1123.56219 0.13168 7.4109E-05 2.7324 0.0015377 2.8641 0.0016119 562.7889660329583 43.33 0.15678 46.572 46.503 46.66 3.2419 13 8 2 0 0 0 0.47197 1 8993 8993 3.5965 0 1 58123 + 13919 25206 8911 8917 17070 17070 0.005347519782162635 IKEAKQRA 8 Unmodified _IKEAKQRA_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MULTI-MSMS UPN47_class_I_Rep_1 2 472.2879333496094 2 472.287808 942.561064 -0.36006 -0.00017005 -0.019468 -9.1947E-06 -0.37952 -0.00017924 472.28785191040936 23.985 0.6953 27.715 27.456 28.151 3.7298 79 57 2 0 0 0 0.82752 1 3074 3074 3.5965 0.31518 1 77407 13920 2803 8912 8918 17071 17071 0.0874858239999412 IKEHLLKSKW 10 Unmodified _IKEHLLKSKW_ 0 0 0 ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5 ENST00000491144.5_1_3:183853173-183855624:+|nuORF ENST00000491144.5_1_3:183853173-183855624:+|nuORF MSMS UPN48_class_I_Rep_2 6 641.3861694335938 2 641.387522 1280.76049 NaN NaN NaN NaN NaN NaN NaN 94.427 1 98.203 97.703 98.703 3.7761 0 0 0 0.53105 1 22452 22452 1.3295 0.13619 1 13921 3385 8913 8919 17072 17072 0.13134217627884937 IKEIDVIKEIP 11 Unmodified _IKEIDVIKEIP_ 0 0 0 L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|59|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|59|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 648.8938598632812 2 648.892303 1295.77005 NaN NaN NaN NaN NaN NaN NaN 104.46 1 104.46 103.96 104.96 0 0 0 0 0.38417 1 25504 25504 4.897 0 1 13922 9645 8914 8920 17073 17073 0.13399941122747805 IKEIIWVRNP 10 Unmodified _IKEIIWVRNP_ 0 0 0 ENST00000527278.5_1_7:64389231-64389459:+|nuORF ENST00000527278.5_1_7:64389231-64389459:+|nuORF ENST00000527278.5_1_7:64389231-64389459:+|nuORF MSMS UPN46_class_I_Rep_3 1 634.3759765625 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 108.19 1 108.19 107.69 108.69 0 0 0 0 0.53105 1 26437 26437 9.3831 1.2276 1 13923 7268 8915 8921 17074 17074 0.12213931110863996 IKELTKRHNL 10 Unmodified _IKELTKRHNL_ 0 0 0 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 MSMS UPN47_class_I_Rep_2 3 417.9219970703125 3 417.922578 1250.7459 NaN NaN NaN NaN NaN NaN NaN 98.479 1 101.97 101.47 102.47 3.4897 0 0 0 0.53105 1 24148 24148 3.3196 0.24738 1 13924 3106 8916 8922 17075 17075 0.13056145479754377 IKEPAPLPSR 10 Unmodified _IKEPAPLPSR_ 0 0 0 ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT MULTI-MSMS UPN48_class_I_Rep_1 5 554.3297119140625 2 554.329673 1106.64479 0.48829 0.00027067 -0.047164 -2.6144E-05 0.44112 0.00024453 554.3294830747336 107.88 0.48497 111.51 111.42 111.91 3.6313 107 40 5 0 0 0 0.47804 1 26021 26021 13.615 3.4643 1 44523000 13925 1073 8917 8923 17076 17076 0.09573693777042536 IKEPLTWPVL 10 Unmodified _IKEPLTWPVL_ 0 0 0 REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|294|3|anti-sense REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|294|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 597.8574829101562 2 598.357899 1194.70125 0.55443 0.00033174 -0.025517 -1.5268E-05 0.52891 0.00031648 598.3578427686509 85.651 0.098907 89.421 89.373 89.472 3.7701 17 11 2 0 0 0 0.84575 1 20314 20314 0.35063 0 1 148460 + 13926 30478 8918 8924 17077 17077 0.11168321613695298 IKERHPQAAK 10 Unmodified _IKERHPQAAK_ 0 0 0 REV__ENSG00000234127|ENST00000454678|TRIM26 REV__ENSG00000234127|ENST00000454678|TRIM26 MSMS UPN47_class_I_Rep_3 4 589.34228515625 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 88.244 1 91.631 91.131 92.131 3.3873 0 0 0 0.53105 1 22131 22131 1.3295 0 1 + 13927 21302 8919 8925 17078 17078 0.09147016757128767 IKERTRSEK 9 Unmodified _IKERTRSEK_ 0 0 0 REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.8341674804688 2 573.833111 1145.65167 0.40121 0.00023022 1.7459 0.0010018 2.1471 0.0012321 573.8338838620385 107.87 0.18988 111.5 111.44 111.63 3.6313 25 14 3 0 0 0 0.37599 1 26039 26039 9.3831 0.63772 1 3653900 + 13928 28110 8920 8926 17079 17079 0.0846700665761091 IKERTRSEK 9 Unmodified _IKERTRSEK_ 0 0 0 REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 573.833111 1145.65167 0.48425 0.00027788 1.7127 0.00098279 2.1969 0.0012607 573.8340188313258 107.86 0.186 111.53 111.48 111.66 3.6724 0.034466 -2.1456E-05 NaN 9.3831 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2304300 + 13929 28110 8920 8926 0.0846700665761091 IKERTRSEK 9 Unmodified _IKERTRSEK_ 0 0 0 REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 573.833111 1145.65167 0.63477 0.00036425 1.6655 0.0009557 2.3002 0.00132 573.8342740354689 107.89 0.082771 111.42 111.37 111.45 3.5345 -0.071468 -7.5641E-05 NaN 9.3831 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1495500 + 13930 28110 8920 8926 0.0846700665761091 IKERTRSEK 9 Unmodified _IKERTRSEK_ 0 0 0 REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 573.833111 1145.65167 0.48176 0.00027645 1.5288 0.00087726 2.0105 0.0011537 573.8337939174978 107.82 0.11144 111.5 111.46 111.57 3.6783 0.0045827 -0.00023253 NaN 9.3831 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3895500 + 13931 28110 8920 8926 0.0846700665761091 IKERTRSEK 9 Unmodified _IKERTRSEK_ 0 0 0 REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense REV__L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 573.833111 1145.65167 0.47145 0.00027054 1.7826 0.0010229 2.2541 0.0012935 573.8340236099402 107.84 0.089012 111.52 111.49 111.58 3.6813 0.023851 5.8807E-05 NaN 9.3831 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2321100 + 13932 28110 8920 8926 0.0846700665761091 IKETLRLH 8 Unmodified _IKETLRLH_ 0 0 0 nc|ENSG00000140459|P05108-2|CYP11A1;ENSG00000140459|ENST00000268053|CYP11A1 nc|ENSG00000140459|P05108-2|CYP11A1 nc|ENSG00000140459|P05108-2|CYP11A1 MULTI-MSMS UPN47_class_I_Rep_1 2 505.311279296875 2 505.311284 1008.60801 -0.080995 -4.0928E-05 0.071168 3.5962E-05 -0.0098272 -4.9658E-06 505.3113378179972 44.84 1.2249 48.54 48.102 49.327 3.6999 144 78 3 0 0 0 0.82752 1 9334 9334 10.824 0.75 1 237280 13933 3176 8921 8927 17080 17080 0.1040544195111579 IKFCTEQVFL 10 Unmodified _IKFCTEQVFL_ 0 0 0 REV__L1ME4a_dup32238|chr19:48217339-48217613:-|1.6709227788408585|0.0923543892479254|4.18|151.0|20|3|anti-sense REV__L1ME4a_dup32238|chr19:48217339-48217613:-|1.6709227788408585|0.0923543892479254|4.18|151.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 614.3250732421875 2 614.325742 1226.63693 NaN NaN NaN NaN NaN NaN NaN 56.485 1 56.485 55.985 56.985 0 0 0 0 0.53105 1 12323 12323 1.3295 0 1 + 13934 28229 8922 8928 17081 17081 0.03267798465253691 IKFFPFFY 8 Unmodified _IKFFPFFY_ 0 0 0 ENST00000360315.7_1_19:19617063-19617249:+|nuORF ENST00000360315.7_1_19:19617063-19617249:+|nuORF ENST00000360315.7_1_19:19617063-19617249:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 554.7982177734375 2 554.796946 1107.57934 0.12712 7.0524E-05 1.0655 0.00059113 1.1926 0.00066166 554.7975430581463 45.386 0.53464 49.086 48.708 49.242 3.6999 47 31 2 0 0 0 0.82752 1 9573 9573 2.3027 0 1 54294 13935 6315 8923 8929 17082 17082 0.029853243219804426 IKGIKLKTTL 10 Unmodified _IKGIKLKTTL_ 0 0 0 REV__L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|2|1|sense REV__L1ME2_dup1232|chr2:28302433-28303020:-|1.183231120213835|0.0761764182996746|3.96|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 557.8822631835938 2 557.881542 1113.74853 NaN NaN NaN NaN NaN NaN NaN 88.586 1 92.039 91.539 92.539 3.4525 0 0 0 0.53105 1 22025 22025 0.40072 0 1 + 13936 27828 8924 8930 17083 17083 0.19620600884695705 IKGKFLPF 8 Unmodified _IKGKFLPF_ 0 0 0 ENSG00000027697.15,IFNGR1,chr6,-,I3.1,137207078,137209849|25|8.04|4|intron ENSG00000027697.15,IFNGR1,chr6,-,I3.1,137207078,137209849|25|8.04|4|intron ENSG00000027697.15,IFNGR1,chr6,-,I3.1,137207078,137209849|25|8.04|4|intron MSMS UPN46_class_I_Rep_3 1 475.2985534667969 2 475.297114 948.579674 NaN NaN NaN NaN NaN NaN NaN 84.623 1 84.623 84.123 85.123 0 0 0 0 0.40738 1 20143 20143 0.79363 0 1 13937 827 8925 8931 17084 17084 0.10332744041852493 IKGKGTKMKIL 11 Unmodified _IKGKGTKMKIL_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MSMS UPN47_class_I_Rep_2 3 406.2667541503906 3 406.265176 1215.7737 NaN NaN NaN NaN NaN NaN NaN 34.587 1 38.012 37.512 38.512 3.4253 0 0 0 0.38417 1 6275 6275 0.36667 0.20735 1 13938 3761 8926 8932 17085 17085 0.17444332415630015 IKGRPVRIMW 10 Unmodified _IKGRPVRIMW_ 0 0 0 ENSG00000186288|ENST00000373519|PABPC1L2A;ENSG00000184388|ENST00000373521|PABPC1L2B ENSG00000186288|ENST00000373519|PABPC1L2A ENSG00000186288|ENST00000373519|PABPC1L2A MSMS UPN46_class_I_Rep_3 1 628.374755859375 2 628.376435 1254.73832 NaN NaN NaN NaN NaN NaN NaN 34.253 1 34.253 33.753 34.753 0 0 0 0 0.53105 1 6093 6093 0.45834 0.15131 1 13939 5050 8927 8933 17086 17086 0.12113714678457654 IKHGKYRKD 9 Unmodified _IKHGKYRKD_ 0 0 0 L1MEg_dup13681|chr19:29962784-29964302:-|2.942181132773123|0.0302577671139078|6.6|151.0|50|3|sense L1MEg_dup13681|chr19:29962784-29964302:-|2.942181132773123|0.0302577671139078|6.6|151.0|50|3|sense L1MEg_dup13681|chr19:29962784-29964302:-|2.942181132773123|0.0302577671139078|6.6|151.0|50|3|sense MSMS UPN47_class_I_Rep_1 2 572.8348388671875 2 572.832914 1143.65128 NaN NaN NaN NaN NaN NaN NaN 102.66 1 106.44 105.94 106.94 3.7788 0 0 0 0.40098 1 25260 25260 0.45834 0 1 13940 13367 8928 8934 17087 17087 0.0851963172840442 IKHGPVKSFK 10 Unmodified _IKHGPVKSFK_ 0 0 0 REV__L1MA2_dup5411|chr11:14496335-14498316:+|3.0288499511099607|0.3491566207813676|3.12|151.0|40|3|sense REV__L1MA2_dup5411|chr11:14496335-14498316:+|3.0288499511099607|0.3491566207813676|3.12|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.8480834960938 2 570.848033 1139.68151 0.39863 0.00022756 0.059219 3.3805E-05 0.45785 0.00026136 570.847929641273 108.7 0.60485 112.33 112.17 112.77 3.6321 236 72 5 0 0 0 0.47413 2 26334 26287;26334 13.906 0 1 96923000 + 13941 24883 8929 8935 17088;17089 17089 0.11725990393620123 IKHLHKLG 8 Unmodified _IKHLHKLG_ 0 0 0 REV__ENST00000515601.6_1_5:454142-462080:+|nuORF REV__ENST00000515601.6_1_5:454142-462080:+|nuORF MSMS UPN48_class_I_Rep_2 6 473.3045349121094 2 473.303262 944.59197 NaN NaN NaN NaN NaN NaN NaN 54.385 1 57.967 57.467 58.467 3.5817 0 0 0 0.40625 1 11490 11490 2.3027 0 1 + 13942 22765 8930 8936 17090 17090 0.1174578050489572 IKHMKFWRK 9 Unmodified _IKHMKFWRK_ 0 0 0 ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5 ENST00000553281.5_1_14:89088194-89171927:-|nuORF ENST00000553281.5_1_14:89088194-89171927:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 637.3720092773438 2 637.371153 1272.72775 0.43367 0.00027641 2.1983 0.0014011 2.632 0.0016775 637.3723309329174 102.41 0.088348 106.03 105.98 106.07 3.6164 20 12 2 0 0 0 0.48846 1 24691 24691 1.8442 0 1 79878 13943 4184 8931 8937 17091 17091 0.10229732024026816 IKHMKFWRK 9 Unmodified _IKHMKFWRK_ 0 0 0 ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5 ENST00000553281.5_1_14:89088194-89171927:-|nuORF ENST00000553281.5_1_14:89088194-89171927:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 637.371153 1272.72775 0.49822 0.00031755 0.75795 0.00048309 1.2562 0.00080065 637.3718520492992 102.65 0.05645 106.36 106.33 106.38 3.7108 0.16751 -0.00061097 NaN 1.8442 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 76699 13944 4184 8931 8937 0.10229732024026816 IKHSLVHKVF 10 Unmodified _IKHSLVHKVF_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MSMS UPN47_class_I_Rep_3 4 604.3672485351562 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 97.551 1 100.97 100.47 101.47 3.4216 0 0 0 0.53105 1 24179 24179 1.3295 0.36726 1 13945 1204 8932 8938 17092 17092 0.12861965801948827 IKIALKRIP 9 Unmodified _IKIALKRIP_ 0 0 0 REV__ENSG00000136531|ENST00000375437|SCN2A REV__ENSG00000136531|ENST00000375437|SCN2A MSMS UPN47_class_I_Rep_1 2 526.3721923828125 2 526.371144 1050.72774 NaN NaN NaN NaN NaN NaN NaN 100.44 1 104.23 103.73 104.73 3.7942 0 0 0 0.4007 1 24829 24829 0.52476 0 1 + 13946 19188 8933 8939 17093 17093 0.20440055295694037 IKIHVHIY 8 Unmodified _IKIHVHIY_ 0 0 0 L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|30|2|sense L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|30|2|sense L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 511.8338623046875 2 511.810919 1021.60729 NaN NaN NaN NaN NaN NaN NaN 69.376 1 72.652 72.152 73.152 3.2761 0 0 0 0.40364 1 16844 16844 5.7604 2.8712 1 13947 13636 8934 8940 17094 17094 0.09734647302082067 IKIIRPLTV 9 Unmodified _IKIIRPLTV_ 0 0 0 nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 MSMS UPN47_class_I_Rep_1 2 526.8623046875 2 526.863152 1051.71175 NaN NaN NaN NaN NaN NaN NaN 30.156 1 33.901 33.401 34.401 3.7449 0 0 0 0.39598 1 4892 4892 1.6526 0 1 13948 1966 8935 8941 17095 17095 0.18796349058766282 IKIKKKHNRRQ 11 Unmodified _IKIKKKHNRRQ_ 0 0 0 REV__L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|76|2|sense REV__L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|76|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.6473083496094 3 483.647671 1447.92118 0.11633 5.626E-05 -1.2518 -0.00060543 -1.1355 -0.00054917 483.647272740247 56.683 0.032944 60.141 60.12 60.153 3.4572 5 3 2 0 0 0 0.68024 1 12968 12968 0.50596 0 1 130850 + 13949 26546 8936 8942 17096 17096 0.2151398506462101 IKILLRKPVNK 11 Unmodified _IKILLRKPVNK_ 0 0 0 REV__Tigger2_dup1513|chr8:123794130-123795260:+|1.0598824975008363|0.060549857551661|4.13|151.0|66|2|anti-sense REV__Tigger2_dup1513|chr8:123794130-123795260:+|1.0598824975008363|0.060549857551661|4.13|151.0|66|2|anti-sense MSMS UPN47_class_I_Rep_2 3 441.2976379394531 3 441.306252 1320.89693 NaN NaN NaN NaN NaN NaN NaN 82.698 1 86.097 85.597 86.597 3.3984 0 0 0 0.38417 1 20615 20615 0.08335 0.010087 1 + 13950 32636 8937 8943 17097 17097 0.24931331858397243 IKIVRPWAEGT 11 Unmodified _IKIVRPWAEGT_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9 nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MSMS UPN48_class_I_Rep_3 7 635.3106689453125 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 94.545 1 98.447 97.947 98.947 3.9016 0 0 0 0.38417 1 22405 22405 1.1933 0.66858 1 13951 2915 8938 8944 17098 17098 0.10049340731166012 IKKAKFHV 8 Unmodified _IKKAKFHV_ 0 0 0 REV__L1MD_dup7955|chr18:2683296-2684017:-|1.0765126357785202|0.0316422398755055|5.09|151.0|4|1|sense REV__L1MD_dup7955|chr18:2683296-2684017:-|1.0765126357785202|0.0316422398755055|5.09|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 485.8121337890625 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 78.712 1 82.333 81.833 82.833 3.6216 0 0 0 0.40604 1 18640 18640 2.5775 0.27475 1 + 13952 27287 8939 8945 17099 17099 0.12634951164693575 IKKAPIQT 8 Unmodified _IKKAPIQT_ 0 0 0 ENSG00000095485.18,CWF19L1,chr10,-,I5.1,100254620,100256261|35|7.17|3|intron;ENSG00000095485.18,CWF19L1,chr10,-,I5.1,100254620,100256261|35|7.17|2|intron;ENSG00000095485|ENST00000354105|CWF19L1 ENSG00000095485.18,CWF19L1,chr10,-,I5.1,100254620,100256261|35|7.17|3|intron ENSG00000095485.18,CWF19L1,chr10,-,I5.1,100254620,100256261|35|7.17|3|intron MSMS UPN47_class_I_Rep_2 3 449.7889709472656 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 67.518 1 70.782 70.282 71.282 3.2636 0 0 0 0.40746 1 16289 16289 0.69038 0 1 13953 1412 8940 8946 17100 17100 0.11187252173829165 IKKCMKLV 8 Unmodified _IKKCMKLV_ 0 0 0 ENST00000471257.5_1_1:235377084-235377189:-|nuORF ENST00000471257.5_1_1:235377084-235377189:-|nuORF ENST00000471257.5_1_1:235377084-235377189:-|nuORF MSMS UPN48_class_I_Rep_2 6 481.7978820800781 2 481.798109 961.581665 NaN NaN NaN NaN NaN NaN NaN 39.38 1 43.109 42.609 43.609 3.7297 0 0 0 0.40746 1 6980 6980 0.69038 0 1 13954 6924 8941 8947 17101 17101 0.09933713463783533 IKKDEQEHEF 10 Unmodified _IKKDEQEHEF_ 0 0 0 ENST00000593455.5_1_19:40486165-40487209:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4 ENST00000593455.5_1_19:40486165-40487209:+|nuORF ENST00000593455.5_1_19:40486165-40487209:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 434.32183837890625 3 434.882337 1301.62518 0.13679 5.9487E-05 -0.4125 -0.00017939 -0.27571 -0.0001199 435.2163798628557 109.35 0.68587 113.02 112.9 113.58 3.6751 132 95 2 0 0 0 0.84575 1 25943 25943 1.9064 1.9064 1 1455900 13955 785 8942 8948 17102 17102 -0.01356727024403881 IKKDEQEHEF 10 Unmodified _IKKDEQEHEF_ 0 0 0 ENST00000593455.5_1_19:40486165-40487209:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4 ENST00000593455.5_1_19:40486165-40487209:+|nuORF ENST00000593455.5_1_19:40486165-40487209:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 434.882337 1301.62518 -0.17943 -7.8033E-05 -0.061732 -2.6846E-05 -0.24117 -0.00010488 435.21654802385535 109.33 1.7641 112.86 112.77 114.53 3.5307 -0.081837 0.0001498 NaN 1.9064 312 236 2 NaN NaN NaN NaN 0 NaN NaN 0 2542900 13956 785 8942 8948 -0.01356727024403881 IKKEGRHHAK 10 Unmodified _IKKEGRHHAK_ 0 0 0 REV__L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|3|1|sense REV__L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 602.355224609375 2 602.357088 1202.69962 NaN NaN NaN NaN NaN NaN NaN 90.607 1 94.363 93.863 94.863 3.7554 0 0 0 0.53105 1 21584 21584 1.3295 0 1 + 13957 28400 8943 8949 17103 17103 0.10638125368291185 IKKESHLY 8 Unmodified _IKKESHLY_ 0 0 0 REV__nc|ENSG00000134602|Q9P289-2|STK26 REV__nc|ENSG00000134602|Q9P289-2|STK26 MULTI-SECPEP UPN47_class_I_Rep_3 4 509.7646484375 2 509.290017 1016.56548 -0.069366 -3.5328E-05 -0.14007 -7.1335E-05 -0.20943 -0.00010666 509.2897214704175 42.933 0.40748 46.173 45.978 46.385 3.2394 47 27 2 0 0 0 0.72333 1 8831 8831 9.3474 9.3474 1 76923 + 13958 18196 8944 8950 17104 17104 0.05786046822879598 IKKESHLY 8 Unmodified _IKKESHLY_ 0 0 0 REV__nc|ENSG00000134602|Q9P289-2|STK26 REV__nc|ENSG00000134602|Q9P289-2|STK26 MULTI-MATCH UPN47_class_I_Rep_2 3 2 509.290017 1016.56548 -0.19093 -9.7237E-05 0.39972 0.00020357 0.20879 0.00010633 509.7918853465142 42.794 0.71142 46.155 45.961 46.673 3.3611 0.04097 0.00023089 NaN 9.3474 65 48 2 NaN NaN NaN NaN 0 NaN NaN 0 65219 + 13959 18196 8944 8950 0.05786046822879598 IKKGHPVKK 9 Unmodified _IKKGHPVKK_ 0 0 0 REV__L1MEf_dup277|chr1:93219767-93220621:+|1.5101231102696928|0.1910025595680859|2.98|151.0|28|3|sense REV__L1MEf_dup277|chr1:93219767-93220621:+|1.5101231102696928|0.1910025595680859|2.98|151.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 517.8439331054688 2 517.845294 1033.67603 NaN NaN NaN NaN NaN NaN NaN 108.19 1 111.87 111.37 112.37 3.6813 0 0 0 0.39428 1 25577 25577 2.0598 0.21551 1 + 13960 28623 8945 8951 17105 17105 0.16054311601760674 IKKGKAKP 8 Unmodified _IKKGKAKP_ 0 0 0 REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|8|1|sense REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 435.3002624511719 2 435.300188 868.585822 0.084513 3.6789E-05 -0.2129 -9.2674E-05 -0.12838 -5.5886E-05 435.3001219390273 62.828 0.16674 66.291 66.219 66.385 3.4625 12 9 2 0 0 0 0.82752 1 14099 14099 2.3027 0 1 166650 + 13961 28065 8946 8952 17106 17106 0.14627262273347696 IKKGKAKP 8 Unmodified _IKKGKAKP_ 0 0 0 REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|8|1|sense REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 435.3003234863281 2 435.300188 868.585822 0.15159 6.5989E-05 -0.45211 -0.0001968 -0.30052 -0.00013082 435.29995681927363 62.648 0.1073 66.122 66.052 66.159 3.4738 10 7 2 0 0 0 0.82752 1 14026 14026 2.3027 0 1 96431 + 13962 28065 8946 8952 17107 17107 0.14627262273347696 IKKGKAKP 8 Unmodified _IKKGKAKP_ 0 0 0 REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|8|1|sense REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 435.3001403808594 2 435.300188 868.585822 0.1268 5.5195E-05 -0.11584 -5.0426E-05 0.010954 4.7683E-06 435.300061504071 66.046 0.40108 69.532 69.304 69.705 3.4866 40 28 2 0 0 0 0.82752 1 15066 15066 2.3027 0 1 445680 + 13963 28065 8946 8952 17108 17108 0.14627262273347696 IKKGQILVAVF 11 Unmodified _IKKGQILVAVF_ 0 0 0 nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-4|SON MULTI-SECPEP UPN47_class_I_Rep_1 2 405.79827880859375 3 405.932303 1214.77508 -0.45638 -0.00018526 -0.20003 -8.1199E-05 -0.65641 -0.00026646 406.26666093327026 34.087 0.25421 37.78 37.707 37.961 3.6934 23 17 2 0 0 0 22.551 1 6133 6133 0.08335 0 1 80882 13964 16725 8947 8953 17109 17109 0.17628289776007477 IKKHESATLKV 11 Unmodified _IKKHESATLKV_ 0 0 0 REV__L1MEf_dup1075|chr2:62060354-62061520:-|1.0765126357785202|0.0073986289058131|7.18|150.0|15|2|sense REV__L1MEf_dup1075|chr2:62060354-62061520:-|1.0765126357785202|0.0073986289058131|7.18|150.0|15|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 626.8887329101562 2 627.382437 1252.75032 0.49523 0.0003107 0.42982 0.00026966 0.92505 0.00058036 627.8845921475504 105.48 0.28166 109.17 109.05 109.33 3.6901 61 39 3 0 0 0 22.551 1 24950 24950 4.897 1.9018 1 322160 + 13965 28596 8948 8954 17110 17110 0.13405609902633842 IKKKLLLKGY 10 Unmodified _IKKKLLLKGY_ 0 0 0 REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|15|2|sense REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 602.4117431640625 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 113.23 1 116.8 116.3 117.3 3.572 0 0 0 0.53105 1 27932 27932 0.40072 0 1 + 13966 32754 8949 8955 17111 17111 0.21817166672758503 IKKLKRINL 9 Unmodified _IKKLKRINL_ 0 0 0 REV__L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|56|2|sense REV__L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|56|2|sense MSMS UPN46_class_I_Rep_3 1 563.3930053710938 2 563.395151 1124.77575 NaN NaN NaN NaN NaN NaN NaN 77.659 1 77.659 77.159 78.159 0 0 0 0 0.4007 1 18163 18163 0.52476 0 1 + 13967 26789 8950 8956 17112 17112 0.21835129215719462 IKKRQRQRHR 10 Unmodified _IKKRQRQRHR_ 0 0 0 REV__MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense REV__MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 469.2958679199219 3 469.295632 1404.86507 NaN NaN NaN NaN NaN NaN NaN 108.99 1 112.59 112.09 113.09 3.6046 0 0 0 0.53105 1 26851 26851 0.15932 0 1 + 13968 31631 8951 8957 17113 17113 0.17882776947817547 IKKSPFSKIVV 11 Unmodified _IKKSPFSKIVV_ 0 0 0 REV__L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|34|1|sense REV__L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|34|1|sense MSMS UPN46_class_I_Rep_3 1 623.3868408203125 2 623.400099 1244.78564 NaN NaN NaN NaN NaN NaN NaN 109.59 1 109.59 109.09 110.09 0 0 0 0 0.38417 1 26930 26930 4.1895 0 1 + 13969 24115 8952 8958 17114 17114 0.17304272430442325 IKKTHRLKIKG 11 Unmodified _IKKTHRLKIKG_ 0 0 0 ENST00000475406.5_1_1:210405005-210405083:-|nuORF ENST00000475406.5_1_1:210405005-210405083:-|nuORF ENST00000475406.5_1_1:210405005-210405083:-|nuORF MSMS UPN47_class_I_Rep_2 3 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 55.907 1 59.217 58.717 59.717 3.3102 0 0 0 0.38417 1 12756 12756 0.094841 0 1 13970 6956 8953 8959 17115 17115 0.22417277055797058 IKKTHRLKIKG 11 Unmodified _IKKTHRLKIKG_ 0 0 0 ENST00000475406.5_1_1:210405005-210405083:-|nuORF ENST00000475406.5_1_1:210405005-210405083:-|nuORF ENST00000475406.5_1_1:210405005-210405083:-|nuORF MSMS UPN47_class_I_Rep_2 3 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.327 1 80.659 80.159 81.159 3.3315 0 0 0 0.38417 1 19176 19176 0.094841 0 1 13971 6956 8953 8959 17116 17116 0.22417277055797058 IKKTHRLKIKG 11 Unmodified _IKKTHRLKIKG_ 0 0 0 ENST00000475406.5_1_1:210405005-210405083:-|nuORF ENST00000475406.5_1_1:210405005-210405083:-|nuORF ENST00000475406.5_1_1:210405005-210405083:-|nuORF MSMS UPN48_class_I_Rep_1 5 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.015 1 54.54 54.04 55.04 3.5246 0 0 0 0.38417 1 10478 10478 0.094841 0 1 13972 6956 8953 8959 17117 17117 0.22417277055797058 IKKTNNTSIA 10 Unmodified _IKKTNNTSIA_ 0 0 0 REV__AluJb_dup3852|chr1:44480124-44480409:+|1.8825513842400328|0.000491934635769|11.9|149.0|6|2|sense REV__AluJb_dup3852|chr1:44480124-44480409:+|1.8825513842400328|0.000491934635769|11.9|149.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 545.818603515625 2 545.316763 1088.61897 0.44713 0.00024383 0.13645 7.4408E-05 0.58358 0.00031824 545.3168055500869 82.885 0.42815 86.472 86.311 86.739 3.5871 85 46 2 0 0 0 0.56118 1 19842 19842 2.9952 0 1 113190 + 13973 16943 8954 8960 17118 17118 0.07820799534783873 IKKTNNTSIA 10 Unmodified _IKKTNNTSIA_ 0 0 0 REV__AluJb_dup3852|chr1:44480124-44480409:+|1.8825513842400328|0.000491934635769|11.9|149.0|6|2|sense REV__AluJb_dup3852|chr1:44480124-44480409:+|1.8825513842400328|0.000491934635769|11.9|149.0|6|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.38172 0.00020816 0.12215 6.6612E-05 0.50387 0.00027477 545.3165748371199 86.32 0.15115 86.32 86.268 86.419 0 -0.075725 -1.1407E-05 NaN 2.9952 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 406280 + 13974 16943 8954 8960 0.07820799534783873 IKKTVAYR 8 Unmodified _IKKTVAYR_ 0 0 0 ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.2730712890625 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 66.182 1 69.54 69.04 70.04 3.3576 0 0 0 0.40746 1 15837 15837 0.69038 0 1 13975 6862 8955 8961 17119 17119 0.11250343439451171 IKKYEDSCN 9 Unmodified _IKKYEDSCN_ 0 0 0 REV__ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|7|intron REV__ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|7|intron MSMS UPN46_class_I_Rep_3 1 549.77783203125 2 550.258056 1098.50156 NaN NaN NaN NaN NaN NaN NaN 94.266 1 94.266 93.766 94.766 0 0 0 0 0.39598 1 22866 22866 1.6526 0.85899 1 + 13976 19543 8956 8962 17120 17120 -0.04375101396362879 IKKYTVKRRRN 11 Unmodified _IKKYTVKRRRN_ 0 0 0 L1MB3_dup10437|chr10:87910724-87911927:-|1.980681188347708|0.0283192024350002|6.13|151.0|14|2|sense L1MB3_dup10437|chr10:87910724-87911927:-|1.980681188347708|0.0283192024350002|6.13|151.0|14|2|sense L1MB3_dup10437|chr10:87910724-87911927:-|1.980681188347708|0.0283192024350002|6.13|151.0|14|2|sense MSMS UPN48_class_I_Rep_2 6 487.9744567871094 3 487.975676 1460.9052 NaN NaN NaN NaN NaN NaN NaN 104.51 1 108.21 107.71 108.71 3.6991 0 0 0 0.38417 1 24734 24734 1.1098 0 1 13977 10316 8957 8963 17121 17121 0.1931827882772268 IKLCCVAKEI 10 Unmodified _IKLCCVAKEI_ 0 0 0 MLT1E_dup134|chr3:71151891-71152469:+|1.0613918632094734|0.0035278248591624|8.23|151.0|9|2|sense MLT1E_dup134|chr3:71151891-71152469:+|1.0613918632094734|0.0035278248591624|8.23|151.0|9|2|sense MLT1E_dup134|chr3:71151891-71152469:+|1.0613918632094734|0.0035278248591624|8.23|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.31689453125 2 560.316863 1118.61917 0.43626 0.00024445 0.24687 0.00013833 0.68314 0.00038277 560.3169800776897 41.163 0.85552 44.914 44.447 45.303 3.7509 186 89 3 0 0 0 0.52083 1 7571 7571 9.3831 1.473 1 478900 13978 16364 8958 8964 17122 17122 0.06460759938727278 IKLEVSNGKI 10 Unmodified _IKLEVSNGKI_ 0 0 0 L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|51|3|sense L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|51|3|sense L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.837158203125 2 550.837331 1099.66011 -0.33701 -0.00018564 0.082112 4.523E-05 -0.2549 -0.00014041 550.8374097716161 20.403 0.71572 23.752 23.447 24.163 3.3496 102 61 2 0 0 0 0.53414 1 2093 2093 7.609 0.97858 1 76670 13979 12010 8959 8965 17123 17123 0.11426560574250288 IKLFCFLIIH 10 Unmodified _IKLFCFLIIH_ 0 0 0 Tigger1_dup533|chr1:150434937-150436315:+|2.628593083953916|0.0269469688527956|6.61|151.0|70|2|anti-sense Tigger1_dup533|chr1:150434937-150436315:+|2.628593083953916|0.0269469688527956|6.61|151.0|70|2|anti-sense Tigger1_dup533|chr1:150434937-150436315:+|2.628593083953916|0.0269469688527956|6.61|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_2 6 623.8704833984375 2 623.872662 1245.73077 NaN NaN NaN NaN NaN NaN NaN 96.808 1 100.59 100.09 101.09 3.7804 0 0 0 0.53105 1 23003 23003 1.6526 0.17072 1 13980 33120 8960 8966 17124 17124 0.11773562358212075 IKLFFRRLKLR 11 Unmodified _IKLFFRRLKLR_ 0 0 0 REV__L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|3|1|sense REV__L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 497.3331604003906 3 497.332912 1488.97691 NaN NaN NaN NaN NaN NaN NaN 111.45 1 111.45 110.95 111.95 0 0 0 0 0.38417 1 27479 27479 0 0 1 + 13981 28725 8961 8967 17125 17125 0.2519781825224072 IKLFFVFKK 9 Unmodified _IKLFFVFKK_ 0 0 0 REV__Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|10|1|sense REV__Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 585.3746337890625 2 585.375895 1168.73724 NaN NaN NaN NaN NaN NaN NaN 35.652 1 39.162 38.662 39.662 3.5101 0 0 0 0.4007 1 5858 5858 0.52476 0 1 + 13982 32449 8962 8968 17126 17126 0.1596182358121041 IKLGFGRGRHL 11 Unmodified _IKLGFGRGRHL_ 0 0 0 ENSG00000154485|ENST00000368808|MMP21 ENSG00000154485|ENST00000368808|MMP21 ENSG00000154485|ENST00000368808|MMP21 MULTI-MSMS UPN48_class_I_Rep_1 5 627.3822021484375 2 627.383106 1252.75166 0.42852 0.00026885 -0.8287 -0.00051991 -0.40018 -0.00025107 627.8840147051917 104.41 0.43399 108.03 107.93 108.36 3.6247 167 62 3 0 0 0 0.65271 1 25175 25175 2.9952 0.26005 1 53198000 13983 3674 8963 8969 17127 17127 0.13539288782089898 IKLGKKLVPIP 11 Unmodified _IKLGKKLVPIP_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MSMS UPN47_class_I_Rep_1 2 603.4185791015625 2 603.420834 1204.82712 NaN NaN NaN NaN NaN NaN NaN 107.97 1 111.61 111.11 112.11 3.6355 0 0 0 0.38417 1 26489 26489 1.3295 0.9789 1 + 13984 20865 8964 8970 17128 17128 0.23289453189772757 IKLGKKLVPIP 11 Unmodified _IKLGKKLVPIP_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-MSMS UPN48_class_I_Rep_3 7 603.4191284179688 2 603.420834 1204.82712 0.5441 0.00032832 -2.4851 -0.0014996 -1.941 -0.0011712 603.4187820582371 108.16 0.12552 111.84 111.76 111.89 3.6813 22 9 3 0 0 0 0.67113 1 25553 25553 1.3295 0.9789 1 15819000 + 13985 20865 8964 8970 17129 17129 0.23289453189772757 IKLIFKKLVNF 11 Unmodified _IKLIFKKLVNF_ 0 0 0 MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|24|1|anti-sense MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|24|1|anti-sense MER106B_dup169|chr3:138695142-138695757:+|1.1166860545699462|0.043667790197834|4.68|151.0|24|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 454.2798156738281 3 454.967236 1361.87988 0.087377 3.9754E-05 0.54922 0.00024988 0.6366 0.00028963 454.9673462352571 40.378 0.83398 44.029 43.629 44.463 3.6509 176 77 3 0 0 0 22.551 1 7273 7273 0.45452 0.29519 1 135780 13986 15766 8965 8971 17130 17130 0.21341411252569742 IKLKHPIKP 9 Unmodified _IKLKHPIKP_ 0 0 0 L1MC5_dup11558|chr13:94584366-94585062:+|1.260551361563973|0.2578863234662725|2.29|150.0|14|2|sense L1MC5_dup11558|chr13:94584366-94585062:+|1.260551361563973|0.2578863234662725|2.29|150.0|14|2|sense L1MC5_dup11558|chr13:94584366-94585062:+|1.260551361563973|0.2578863234662725|2.29|150.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 537.3796997070312 2 537.363319 1072.71209 NaN NaN NaN NaN NaN NaN NaN 108.15 1 111.69 111.19 112.19 3.5382 0 0 0 0.4007 1 26443 26443 0.52476 0 1 13987 11658 8966 8972 17131 17131 0.1786376877867042 IKLLLTYA 8 Unmodified _IKLLLTYA_ 0 0 0 THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|72|2|anti-sense THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|72|2|anti-sense THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_3 4 467.80169677734375 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 84.501 1 87.863 87.363 88.363 3.3615 0 0 0 0.40746 1 21208 21208 0.69038 0 1 13988 32939 8967 8973 17132 17132 0.12045306976403936 IKLRRSIHQKR 11 Unmodified _IKLRRSIHQKR_ 0 0 0 L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|28|2|sense L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|28|2|sense L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 478.9751892089844 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 49.746 1 53.44 52.94 53.94 3.6946 0 0 0 0.38417 1 10084 10084 1.0136 0.55906 1 13989 10808 8968 8974 17133 17133 0.20593698547577333 IKLSKHHYF 9 Unmodified _IKLSKHHYF_ 0 0 0 REV__Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|32|1|anti-sense REV__Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 586.8343505859375 2 586.832383 1171.65021 NaN NaN NaN NaN NaN NaN NaN 89.053 1 89.053 88.553 89.553 0 0 0 0 0.40038 1 21412 21412 0.6015 0.20078 1 + 13990 32780 8969 8975 17134 17134 0.07125417359520725 IKLYKKRCRKR 11 Unmodified _IKLYKKRCRKR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|9|1|sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 498.34002685546875 3 497.985407 1490.93439 NaN NaN NaN NaN NaN NaN NaN 37.21 1 37.21 36.71 37.71 0 0 0 0 0.38417 1 6973 6973 0.08335 0.08335 1 + 13991 24932 8970 8976 17135 17135 0.2085609985233532 IKLYWEHH 8 Unmodified _IKLYWEHH_ 0 0 0 REV__ENSG00000160695|ENST00000621676|VPS11 REV__ENSG00000160695|ENST00000621676|VPS11 MSMS UPN47_class_I_Rep_3 4 563.2958984375 2 563.295633 1124.57671 NaN NaN NaN NaN NaN NaN NaN 112.03 1 115.55 115.05 116.05 3.5207 0 0 0 0.40746 1 27509 27509 0.69038 0 1 + 13992 19889 8971 8977 17136 17136 0.01940868917017724 IKMKMFSLSI 10 Unmodified _IKMKMFSLSI_ 0 0 0 REV__L1MC4_dup5360|chr3:152251499-152252114:-|2.352076099890126|0.0352554510621949|6.06|151.0|24|1|anti-sense REV__L1MC4_dup5360|chr3:152251499-152252114:-|2.352076099890126|0.0352554510621949|6.06|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 599.34033203125 2 599.340338 1196.66612 NaN NaN NaN NaN NaN NaN NaN 50.548 1 54.073 53.573 54.573 3.5246 0 0 0 0.53105 1 10334 10334 1.4819 0 1 + 13993 26926 8972 8978 17137 17137 0.0756561948990111 IKMQEMMFF 9 Unmodified _IKMQEMMFF_ 0 0 0 REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF MSMS UPN48_class_I_Rep_2 6 602.7828369140625 2 602.781798 1203.54904 NaN NaN NaN NaN NaN NaN NaN 112.93 1 116.59 116.09 117.09 3.6648 0 0 0 0.40038 1 26925 26925 0.6015 0 1 + 13994 22790 8973 8979 17138 17138 -0.04458861721377616 IKMRLIFVF 9 Unmodified _IKMRLIFVF_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|361|2|anti-sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|361|2|anti-sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|361|2|anti-sense MSMS UPN46_class_I_Rep_3 1 583.859130859375 2 583.859555 1165.70456 NaN NaN NaN NaN NaN NaN NaN 93.262 1 93.262 92.762 93.762 0 0 0 0 0.39428 1 22597 22597 2.0598 0 1 13995 9616 8974 8980 17139 17139 0.1283329318671349 IKMVLRPIIQ 10 Unmodified _IKMVLRPIIQ_ 0 0 0 REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_1 5 404.2633972167969 3 404.261655 1209.76313 NaN NaN NaN NaN NaN NaN NaN 63.626 1 67.084 66.584 67.584 3.4578 0 0 0 0.53105 1 14338 14338 1.7423 0.52744 1 + 13996 23423 8975 8981 17140 17140 0.16664349761185804 IKNEFYNV 8 Unmodified _IKNEFYNV_ 0 0 0 ENST00000470828.1_1_3:64160372-64160561:+|nuORF ENST00000470828.1_1_3:64160372-64160561:+|nuORF ENST00000470828.1_1_3:64160372-64160561:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.7666015625 2 513.766374 1025.5182 0.27711 0.00014237 -0.1144 -5.8777E-05 0.16271 8.3594E-05 513.7662865007271 59.146 0.93292 62.563 62.163 63.096 3.4171 119 63 2 0 0 0 0.82752 1 13751 13751 10.824 1.4408 1 313310 13997 6921 8976 8982 17141 17141 0.006457675518731776 IKNIDFTEL 9 Unmodified _IKNIDFTEL_ 0 0 0 L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.8006591796875 2 546.800414 1091.58628 0.41049 0.00022446 0.1375 7.5186E-05 0.548 0.00029964 546.800441335387 64.416 0.49693 67.772 67.392 67.889 3.3557 174 50 4 0 0 0 0.037922 3 15289 15253;15289;15324 53.833 3.86 1 3044800 13998 10762 8977 8983 17142;17143;17144 17143 0.04414592411899321 IKNIDFTEL 9 Unmodified _IKNIDFTEL_ 0 0 0 L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 546.8005981445312 2 546.800414 1091.58628 0.40699 0.00022254 0.091192 4.9864E-05 0.49818 0.00027241 546.8003784291693 64.579 0.90327 67.935 67.889 68.792 3.3557 153 68 4 0 0 0 0.040212 1 15434 15434 53.833 3.8998 1 1417500 13999 10762 8977 8983 17145 17145 0.04414592411899321 IKNIDFTEL 9 Unmodified _IKNIDFTEL_ 0 0 0 L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.8006591796875 2 546.800414 1091.58628 0.36172 0.00019779 0.12009 6.5666E-05 0.48181 0.00026345 546.8004247116418 64.813 1.3148 68.069 67.53 68.845 3.2556 288 102 4 0 0 0 0.037922 3 15468 15352;15468;15507 53.833 3.8998 1 2440600 14000 10762 8977 8983 17146;17147;17148 17147 0.04414592411899321 IKNIDFTEL 9 Unmodified _IKNIDFTEL_ 0 0 0 L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.8002319335938 2 546.800414 1091.58628 0.42214 0.00023083 0.066606 3.642E-05 0.48875 0.00026725 546.800386293355 64.845 1.2302 68.024 67.565 68.796 3.1795 280 95 4 0 0 0 0.021334 5 15427 15427;15467;15504;15547;15585 62.573 11.993 1 2196600 14001 10762 8977 8983 17149;17150;17151;17152;17153 17149 0.04414592411899321 IKNIDFTEL 9 Unmodified _IKNIDFTEL_ 0 0 0 L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 546.800414 1091.58628 0.42062 0.00023 0.86907 0.00047521 1.2897 0.00070521 546.8012627238377 64.376 0.046455 67.55 67.521 67.567 3.1741 -0.11076 0.0007997 NaN 53.833 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 64105 14002 10762 8977 8983 0.04414592411899321 IKNIKLFFFV 10 Unmodified _IKNIKLFFFV_ 0 0 0 REV__L1PA6_dup4421|chr11:47112841-47116675:-|1.4499233827024811|0.0878008941005539|4.05|151.0|89|3|sense REV__L1PA6_dup4421|chr11:47112841-47116675:-|1.4499233827024811|0.0878008941005539|4.05|151.0|89|3|sense MSMS UPN46_class_I_Rep_3 1 634.8931274414062 2 634.891909 1267.76927 NaN NaN NaN NaN NaN NaN NaN 102.49 1 102.49 101.99 102.99 0 0 0 0 0.53105 1 25011 25011 1.6526 0.17072 1 + 14003 29908 8978 8984 17154 17154 0.1460919126434419 IKNLKILIPWL 11 Unmodified _IKNLKILIPWL_ 0 0 0 nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1 nc|ENSG00000198513|Q8WXF7-2|ATL1 nc|ENSG00000198513|Q8WXF7-2|ATL1 MULTI-SECPEP UPN48_class_I_Rep_2 6 450.62957763671875 3 450.967236 1349.87988 0.23397 0.00010551 -0.26929 -0.00012144 -0.035321 -1.5929E-05 451.3017658704835 53.862 0.26447 57.443 57.255 57.519 3.5817 22 20 2 0 0 0 22.551 1 11309 11309 0.45452 0.31463 1 51107 14004 5435 8979 8985 17155 17155 0.2189341125260853 IKPKFLVIF 9 Unmodified _IKPKFLVIF_ 0 0 0 REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|113|2|anti-sense REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|113|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.304931640625 2 552.862621 1103.71069 NaN NaN NaN NaN NaN NaN NaN 78.157 1 81.679 81.179 82.179 3.5221 0 0 0 0.40038 1 18632 18632 0.6015 0.14316 1 + 14005 27376 8980 8986 17156 17156 0.16298134689873223 IKPKPYVHL 9 Unmodified _IKPKPYVHL_ 0 0 0 REV__L1PA15_dup4830|chrX:71548457-71548927:+|2.084439653455564|0.1529953384752128|3.77|151.0|7|1|sense REV__L1PA15_dup4830|chrX:71548457-71548927:+|2.084439653455564|0.1529953384752128|3.77|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 547.8375244140625 2 547.839677 1093.6648 NaN NaN NaN NaN NaN NaN NaN 48.487 1 52.204 51.704 52.704 3.7175 0 0 0 0.39428 1 9693 9693 2.0598 0.21551 1 + 14006 29249 8981 8987 17157 17157 0.12171489507659317 IKPLVEQCIK 10 Unmodified _IKPLVEQCIK_ 0 0 0 REV__ENSG00000146729|ENST00000322090|NIPSNAP2 REV__ENSG00000146729|ENST00000322090|NIPSNAP2 MSMS UPN48_class_I_Rep_1 5 585.8480834960938 2 585.849384 1169.68422 NaN NaN NaN NaN NaN NaN NaN 68.005 1 71.457 70.957 71.957 3.4517 0 0 0 0.53105 1 15674 15674 2.4985 0.84587 1 + 14007 19548 8982 8988 17158 17158 0.10616077736244733 IKPVPYWW 8 Unmodified _IKPVPYWW_ 0 0 0 L1ME4b_dup17328|chr15:63579966-63580127:+|1.1065244987597704|0.0666979849596516|4.05|151.0|12|3|anti-sense L1ME4b_dup17328|chr15:63579966-63580127:+|1.1065244987597704|0.0666979849596516|4.05|151.0|12|3|anti-sense L1ME4b_dup17328|chr15:63579966-63580127:+|1.1065244987597704|0.0666979849596516|4.05|151.0|12|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.7625122070312 2 544.80002 1087.58549 NaN NaN NaN NaN NaN NaN NaN 19.683 1 19.683 19.183 20.183 0 0 0 0 0.40738 1 1916 1916 0.79363 0 1 14008 12898 8983 8989 17159 17159 0.04519842553509079 IKQEIKRYF 9 Unmodified _IKQEIKRYF_ 0 0 0 REV__L1MC1_dup6039|chr7:76567663-76568595:+|1.4463510478500616|0.1350572939598075|3.42|151.0|56|3|anti-sense REV__L1MC1_dup6039|chr7:76567663-76568595:+|1.4463510478500616|0.1350572939598075|3.42|151.0|56|3|anti-sense MSMS UPN46_class_I_Rep_3 1 612.8606567382812 2 612.858598 1223.70264 NaN NaN NaN NaN NaN NaN NaN 70.412 1 70.412 69.912 70.912 0 0 0 0 0.38639 1 16179 16179 3.9444 0.66309 1 + 14009 26588 8984 8990 17160 17160 0.09973955702457715 IKQGRIQARK 10 Unmodified _IKQGRIQARK_ 0 0 0 L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 599.3804321289062 2 599.380563 1196.74657 0.58154 0.00034856 -0.77968 -0.00046732 -0.19814 -0.00011876 599.3799568180312 99.133 0.11648 99.133 99.076 99.192 0 27 14 3 0 0 0 0.54078 1 24145 24145 6.7232 0.51738 1 500960 14010 11416 8985 8991 17161 17161 0.15606984919440947 IKQGRIQARK 10 Unmodified _IKQGRIQARK_ 0 0 0 L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.8826293945312 2 599.380563 1196.74657 0.63462 0.00038038 -0.82034 -0.0004917 -0.18572 -0.00011132 599.3801386160488 95.431 0.43913 98.906 98.686 99.125 3.4753 110 60 2 0 0 0 0.56333 1 23478 23478 1.4819 0.51963 1 585460 14011 11416 8985 8991 17162 17162 0.15606984919440947 IKQGRIQARK 10 Unmodified _IKQGRIQARK_ 0 0 0 L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 599.38134765625 2 599.380563 1196.74657 0.41423 0.00024828 -0.43784 -0.00026244 -0.023612 -1.4153E-05 599.3802989141963 95.309 0.47835 98.925 98.541 99.019 3.6167 139 59 3 0 0 0 0.54078 1 22954 22954 6.7232 1.8262 1 902450 14012 11416 8985 8991 17163 17163 0.15606984919440947 IKQLLWHRA 9 Unmodified _IKQLLWHRA_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MSMS UPN46_class_I_Rep_3 1 582.8539428710938 2 582.85365 1163.69275 NaN NaN NaN NaN NaN NaN NaN 101.5 1 101.5 101 102 0 0 0 0 0.4007 1 24765 24765 0.52476 0 1 14013 4534 8986 8992 17164 17164 0.11744812487722811 IKQSCHLLVPF 11 Unmodified _IKQSCHLLVPF_ 0 0 0 REV__L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|161|3|anti-sense REV__L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|161|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 642.3623657226562 2 642.860283 1283.70601 0.64008 0.00041148 1.9499 0.0012535 2.59 0.001665 643.362289116458 103.99 0.21541 107.73 107.69 107.9 3.7434 49 34 2 0 0 0 22.551 1 24554 24554 2.9952 1.151 1 41150000 + 14014 28128 8987 8993 17165 17165 0.07550882484792965 IKQSKLLLWKP 11 Unmodified _IKQSKLLLWKP_ 0 0 0 REV__L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|39|3|sense REV__L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 451.9590759277344 3 451.958741 1352.85439 NaN NaN NaN NaN NaN NaN NaN 45.511 1 49.027 48.527 49.527 3.5162 0 0 0 0.38417 1 8784 8784 1.2148 0.4383 1 + 14015 30685 8988 8994 17166 17166 0.19207936730163055 IKRIRVFV 8 Unmodified _IKRIRVFV_ 0 0 0 L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|72|3|anti-sense L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|72|3|anti-sense L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|72|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 515.366455078125 2 515.847836 1029.68112 0.34398 0.00017744 4.0135 0.0020704 4.3575 0.0022478 515.8489191456827 108.1 0.090347 111.77 111.72 111.81 3.6746 11 8 2 0 0 0 0.72333 1 25594 25594 2.3027 0 1 561410 14016 10334 8989 8995 17167 17167 0.16746615464421666 IKRMKRKFY 9 Unmodified _IKRMKRKFY_ 0 0 0 MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant;nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN46_class_I_Rep_3 1 635.3857421875 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 75.551 1 75.551 75.051 76.051 0 0 0 0 0.4007 1 17572 17572 0.52476 0 1 14017 1991 8990 8996 17168 17168 0.1303400119552407 IKRRIYPY 8 Unmodified _IKRRIYPY_ 0 0 0 REV__L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|134|3|sense REV__L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|134|3|sense MSMS UPN47_class_I_Rep_3 4 555.2998657226562 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 78.647 1 81.929 81.429 82.429 3.2816 0 0 0 0.40738 1 19621 19621 0.79363 0 1 + 14018 27591 8991 8997 17169 17169 0.1057772122210281 IKRTNITTV 9 Unmodified _IKRTNITTV_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.32177734375 2 523.321848 1044.62914 0.32986 0.00017262 -0.15675 -8.2029E-05 0.17311 9.0593E-05 523.321715789952 101.56 0.058029 101.56 101.52 101.58 0 10 6 2 0 0 0 0.50582 1 24782 24782 0 0 1 176560 + 14019 26125 8992 8998 17170 17170 0.10861407259949374 IKRTNITTV 9 Unmodified _IKRTNITTV_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 523.321848 1044.62914 0.32986 0.00017262 -0.15675 -8.2029E-05 0.17311 9.0593E-05 523.321715789952 101.56 0.058029 101.56 101.52 101.58 0 0.25806 -2.6775E-05 NaN 0 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 176560 + 14020 26125 8992 8998 0.10861407259949374 IKRTNITTV 9 Unmodified _IKRTNITTV_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 523.321848 1044.62914 0.2837 0.00014847 -0.17883 -9.3587E-05 0.10487 5.488E-05 523.3216643866037 97.581 0.45795 101.19 100.95 101.41 3.6088 -0.1148 -4.9891E-05 NaN 0 76 56 2 NaN NaN NaN NaN 0 NaN NaN 0 129250 + 14021 26125 8992 8998 0.10861407259949374 IKRTNITTV 9 Unmodified _IKRTNITTV_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|22|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 523.321848 1044.62914 0.38366 0.00020078 -0.053305 -2.7896E-05 0.33035 0.00017288 523.3217292092642 97.382 0.44819 101.16 100.95 101.4 3.779 -0.14326 8.1492E-05 NaN 0 80 62 2 NaN NaN NaN NaN 0 NaN NaN 0 105850 + 14022 26125 8992 8998 0.10861407259949374 IKRTTRAA 8 Unmodified _IKRTTRAA_ 0 0 0 REV__ENST00000394997.5_1_14:62162478-62187101:+|nuORF REV__ENST00000394997.5_1_14:62162478-62187101:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 458.787841796875 2 458.787976 915.561398 0.20882 9.5803E-05 -0.13728 -6.2984E-05 0.071534 3.2819E-05 458.78785584271634 88.573 0.095406 88.573 88.54 88.635 0 13 10 2 0 0 0 0.82752 1 21270 21270 0.79363 0 1 110890 + 14023 22110 8993 8999 17171 17171 0.10024002119826037 IKRVKQHIHA 10 Unmodified _IKRVKQHIHA_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|14|1|sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 615.4038696289062 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 98.803 1 98.803 98.303 99.303 0 0 0 0 0.53105 1 24060 24060 0.40072 0 1 + 14024 29206 8994 9000 17172 17172 0.14643288782076525 IKRVPFFPF 9 Unmodified _IKRVPFFPF_ 0 0 0 L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|77|1|anti-sense L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|77|1|anti-sense L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_1 5 575.8432006835938 2 575.84222 1149.66989 NaN NaN NaN NaN NaN NaN NaN 83.598 1 87.185 86.685 87.685 3.5871 0 0 0 0.40038 1 19994 19994 0.6015 0 1 14025 10615 8995 9001 17173 17173 0.10103793370262792 IKRYWLEP 8 Unmodified _IKRYWLEP_ 0 0 0 REV__nc|ENSG00000088826|Q9NWM0-5|SMOX REV__nc|ENSG00000088826|Q9NWM0-5|SMOX MSMS UPN47_class_I_Rep_1 2 552.8134765625 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 21.79 1 25.465 24.965 25.965 3.6749 0 0 0 0.40746 1 2423 2423 0.69038 0 1 + 14026 17994 8996 9002 17174 17174 0.06510326093871299 IKRYWLEP 8 Unmodified _IKRYWLEP_ 0 0 0 REV__nc|ENSG00000088826|Q9NWM0-5|SMOX REV__nc|ENSG00000088826|Q9NWM0-5|SMOX MSMS UPN47_class_I_Rep_1 2 552.7892456054688 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 67.426 1 70.787 70.287 71.287 3.3611 0 0 0 0.40625 1 16214 16214 2.3027 0.4585 1 + 14027 17994 8996 9002 17175 17175 0.06510326093871299 IKRYWLEP 8 Unmodified _IKRYWLEP_ 0 0 0 REV__nc|ENSG00000088826|Q9NWM0-5|SMOX REV__nc|ENSG00000088826|Q9NWM0-5|SMOX MSMS UPN47_class_I_Rep_3 4 552.7595825195312 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 26.154 1 29.502 29.002 30.002 3.3478 0 0 0 0.40746 1 3784 3784 0.69038 0 1 + 14028 17994 8996 9002 17176 17176 0.06510326093871299 IKRYWLEP 8 Unmodified _IKRYWLEP_ 0 0 0 REV__nc|ENSG00000088826|Q9NWM0-5|SMOX REV__nc|ENSG00000088826|Q9NWM0-5|SMOX MSMS UPN48_class_I_Rep_2 6 552.8131713867188 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 18.533 1 22.184 21.684 22.684 3.6509 0 0 0 0.40746 1 1257 1257 0.69038 0 1 + 14029 17994 8996 9002 17177 17177 0.06510326093871299 IKRYWLEP 8 Unmodified _IKRYWLEP_ 0 0 0 REV__nc|ENSG00000088826|Q9NWM0-5|SMOX REV__nc|ENSG00000088826|Q9NWM0-5|SMOX MSMS UPN48_class_I_Rep_2 6 552.8125610351562 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 25.175 1 28.811 28.311 29.311 3.6363 0 0 0 0.40746 1 3029 3029 0.69038 0 1 + 14030 17994 8996 9002 17178 17178 0.06510326093871299 IKSLRIVMHR 10 Unmodified _IKSLRIVMHR_ 0 0 0 REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|56|2|sense REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|56|2|sense MSMS UPN47_class_I_Rep_2 3 626.890869140625 2 626.887167 1251.75978 NaN NaN NaN NaN NaN NaN NaN 104.2 1 107.73 107.23 108.23 3.5289 0 0 0 0.53105 1 25313 25313 3.2813 0.28607 1 + 14031 30439 8997 9003 17179 17179 0.14397099707161942 IKSMVIISTK 10 Unmodified _IKSMVIISTK_ 0 0 0 REV__Tigger1_dup8646|chr11:67199079-67200217:+|3.596785278835748|0.0945155628287688|5.25|151.0|50|1|anti-sense REV__Tigger1_dup8646|chr11:67199079-67200217:+|3.596785278835748|0.0945155628287688|5.25|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_2 6 560.3421630859375 2 560.343935 1118.67332 NaN NaN NaN NaN NaN NaN NaN 78.323 1 81.945 81.445 82.445 3.6222 0 0 0 0.53105 1 18579 18579 2.4985 0.65425 1 + 14032 32550 8998 9004 17180 17180 0.11872675361951224 IKSVHLERRG 10 Unmodified _IKSVHLERRG_ 0 0 0 L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|48|3|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|48|3|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|48|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.8563232421875 2 597.856921 1193.69929 0.42638 0.00025491 -0.6115 -0.00036559 -0.18512 -0.00011068 597.8564495240342 86.465 0.094467 90.078 89.999 90.093 3.613 15 12 2 0 0 0 0.56333 1 20720 20720 1.4819 0 1 82550 14033 10143 8999 9005 17181 17181 0.11018705648439209 IKTGMLRSR 9 Unmodified _IKTGMLRSR_ 0 0 0 REV__L1MA4_dup3485|chr5:149523680-149523961:-|1.124881303930911|0.0212086705715186|5.73|151.0|9|3|sense REV__L1MA4_dup3485|chr5:149523680-149523961:-|1.124881303930911|0.0212086705715186|5.73|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.315673828125 2 531.316043 1060.61753 0.31573 0.00016775 -0.50014 -0.00026573 -0.18441 -9.7982E-05 531.3155986053188 59.92 0.72006 63.193 62.832 63.552 3.2731 72 43 2 0 0 0 0.47197 1 14012 14012 3.5965 0.31518 1 199060 + 14034 25158 9000 9006 17182 17182 0.089648869650091 IKTIEVKPALV 11 Unmodified _IKTIEVKPALV_ 0 0 0 REV__ENST00000551727.5_1_12:104529277-104531339:-|nuORF REV__ENST00000551727.5_1_12:104529277-104531339:-|nuORF MSMS UPN46_class_I_Rep_3 1 404.26318359375 3 404.26383 1209.76966 NaN NaN NaN NaN NaN NaN NaN 69.18 1 69.18 68.68 69.68 0 0 0 0 0.38417 1 15839 15839 0.40827 0.24894 1 + 14035 22962 9001 9007 17183 17183 0.17316566193539984 IKTIQITQMK 10 Unmodified _IKTIQITQMK_ 0 0 0 L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|29|2|sense L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|29|2|sense L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 602.3599853515625 2 602.360116 1202.70568 NaN NaN NaN NaN NaN NaN NaN 95.544 1 99.16 98.66 99.66 3.6167 0 0 0 0.53105 1 23013 23013 1.4819 0 1 14036 13053 9002 9008 17184 17184 0.11243462764923606 IKTKSKKKQRI 11 Unmodified _IKTKSKKKQRI_ 0 0 0 L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|120|3|sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|120|3|sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|120|3|sense MSMS UPN47_class_I_Rep_1 2 453.30523681640625 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 114.84 1 118.42 117.92 118.92 3.5809 0 0 0 0.38417 1 28389 28389 0.094841 0 1 14037 15390 9003 9009 17185 17185 0.22873242364698854 IKTKSKKKQRI 11 Unmodified _IKTKSKKKQRI_ 0 0 0 L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|120|3|sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|120|3|sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|120|3|sense MSMS UPN48_class_I_Rep_2 6 453.30511474609375 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 115.26 1 118.92 118.42 119.42 3.6616 0 0 0 0.38417 1 27582 27582 0.094841 0 1 14038 15390 9003 9009 17186 17186 0.22873242364698854 IKTMKKPH 8 Unmodified _IKTMKKPH_ 0 0 0 L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|140|3|sense L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|140|3|sense L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|140|3|sense MSMS UPN48_class_I_Rep_2 6 491.7960205078125 2 491.796955 981.579357 NaN NaN NaN NaN NaN NaN NaN 64.701 1 68.181 67.681 68.681 3.4792 0 0 0 0.4044 1 14649 14649 4.756 0.42677 1 14039 14914 9004 9010 17187 17187 0.08783001050346684 IKTTAEHLRG 10 Unmodified _IKTTAEHLRG_ 0 0 0 ENSG00000254206|ENST00000698511|NPIPB11 ENSG00000254206|ENST00000698511|NPIPB11 ENSG00000254206|ENST00000698511|NPIPB11 MSMS UPN48_class_I_Rep_2 6 563.3238525390625 2 563.32238 1124.63021 NaN NaN NaN NaN NaN NaN NaN 47.874 1 51.61 51.11 52.11 3.7361 0 0 0 0.53105 1 9504 9504 1.3295 0.13619 1 14040 5752 9005 9011 17188 17188 0.07287621628870511 IKVHTFPL 8 Unmodified _IKVHTFPL_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MSMS UPN47_class_I_Rep_2 3 477.79010009765625 2 477.792195 953.569838 NaN NaN NaN NaN NaN NaN NaN 30.641 1 34.123 33.623 34.623 3.4821 0 0 0 0.40604 1 5079 5079 2.5775 0 1 14041 3923 9006 9012 17189 17189 0.0911955603644401 IKVLKVRGF 9 Unmodified _IKVLKVRGF_ 0 0 0 REV__L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|4|1|sense REV__L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 530.3533325195312 2 530.355494 1058.69644 NaN NaN NaN NaN NaN NaN NaN 102.17 1 105.68 105.18 106.18 3.5151 0 0 0 0.40038 1 24891 24891 0.6015 0.6015 1 + 14042 24640 9007 9013 17190 17190 0.16943482261604004 IKVMLVPKKN 10 Unmodified _IKVMLVPKKN_ 0 0 0 ENST00000461338.5_1_2:162017862-162019698:+|nuORF ENST00000461338.5_1_2:162017862-162019698:+|nuORF ENST00000461338.5_1_2:162017862-162019698:+|nuORF MSMS UPN47_class_I_Rep_2 3 585.793212890625 2 585.375569 1168.73659 NaN NaN NaN NaN NaN NaN NaN 48.594 1 51.94 51.44 52.44 3.3465 0 0 0 0.53105 1 10520 10520 1.6526 0.17072 1 14043 6859 9008 9014 17191 17191 0.1589666086986199 IKWIQHSSY 9 Unmodified _IKWIQHSSY_ 0 0 0 REV__L1MEc_dup17295|chr18:80125996-80126828:-|1.1865320543414275|0.1021518697200698|3.54|151.0|42|2|anti-sense REV__L1MEc_dup17295|chr18:80125996-80126828:-|1.1865320543414275|0.1021518697200698|3.54|151.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.306396484375 2 581.306198 1160.59784 0.40117 0.0002332 0.17128 9.9569E-05 0.57246 0.00033277 581.3063665764865 59.482 0.4966 62.88 62.528 63.025 3.3982 59 35 2 0 0 0 0.47493 1 13839 13839 3.2813 0 1 102090 + 14044 28412 9009 9015 17192 17192 0.023968342258967823 IKWVTDLYFS 10 Unmodified _IKWVTDLYFS_ 0 0 0 REV__ENST00000536899.6_1_12:133758152-133781113:+|nuORF REV__ENST00000536899.6_1_12:133758152-133781113:+|nuORF MSMS UPN47_class_I_Rep_1 2 636.33544921875 2 636.337164 1270.65977 NaN NaN NaN NaN NaN NaN NaN 62.473 1 65.841 65.341 66.341 3.3681 0 0 0 0.53105 1 14720 14720 1.3295 0 1 + 14045 22895 9010 9016 17193 17193 0.035271408543621874 ILAAVSLWI 9 Unmodified _ILAAVSLWI_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|52|3|anti-sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|52|3|anti-sense MSMS UPN47_class_I_Rep_1 2 493.2984619140625 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 50.217 1 53.845 53.345 54.345 3.6285 0 0 0 0.027434 1 10992 10992 48.346 6.3903 1 + 14046 29349 9011 9017 17194 17194 0.10788709350720183 ILAAVSLWI 9 Unmodified _ILAAVSLWI_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|52|3|anti-sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|52|3|anti-sense MSMS UPN47_class_I_Rep_1 2 493.3002014160156 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 50.384 1 54.012 53.512 54.512 3.6285 0 0 0 0.059724 1 11043 11043 34.102 5.6156 1 + 14047 29349 9011 9017 17195 17195 0.10788709350720183 ILAAVSLWI 9 Unmodified _ILAAVSLWI_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|52|3|anti-sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|52|3|anti-sense MSMS UPN47_class_I_Rep_1 2 493.3060607910156 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 50.398 1 54.027 53.527 54.527 3.6285 0 0 0 0.11494 1 11048 11048 21.747 2.4897 1 + 14048 29349 9011 9017 17196 17196 0.10788709350720183 ILACSFCCCC 10 Unmodified _ILACSFCCCC_ 0 0 0 L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|177|3|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|177|3|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|177|3|anti-sense MSMS UPN46_class_I_Rep_3 1 533.1913452148438 2 533.188362 1064.36217 NaN NaN NaN NaN NaN NaN NaN 74.733 1 74.733 74.233 75.233 0 0 0 0 0.53105 1 17346 17346 0.45834 0.45834 1 14049 15231 9012 9018 17197 17197 -0.16743544872906568 ILADIFVSM 9 Oxidation (M) _ILADIFVSM(Oxidation (M))_ ILADIFVSM(1) ILADIFVSM(50) 0 0 1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1;ENST00000512847.1_1_4:113347672-113349016:+|nuORF;ALPK1|p.K388Efs*42|1|0.07|ENSG00000073331|chr4:112430704-112430705|-/G|frameshift_variant ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.77294921875 2 512.772811 1023.53107 0.26193 0.00013431 0.0051983 2.6656E-06 0.26712 0.00013697 512.772757376215 76.317 0.60674 79.732 79.534 80.14 3.4149 78 54 2 0 0 0 0.047711 1 18884 18884 49.933 17.628 1 88307 14050 1113 9013 9019 17198 17198 30 0.020244626198063997 ILAEFEMTL 9 Oxidation (M) _ILAEFEM(Oxidation (M))TL_ ILAEFEM(1)TL ILAEFEM(120)TL 0 0 1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN47_class_I_Rep_1 2 541.7757568359375 2 541.775551 1081.53655 0.39157 0.00021215 -0.18693 -0.00010127 0.20465 0.00011087 541.7754256863402 71.022 0.87631 74.397 74.049 74.925 3.3751 169 74 3 0 0 0 0.0069816 4 17306 17267;17306;17343;17386 120.45 88.145 1 397620 14051 1473 9014 9020 17199;17200;17201;17202 17200 41 -0.0009585858840637229 ILAEFEMTL 9 Oxidation (M) _ILAEFEM(Oxidation (M))TL_ ILAEFEM(1)TL ILAEFEM(52)TL 0 0 1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN47_class_I_Rep_1 2 542.277587890625 2 541.775551 1081.53655 0.42513 0.00023032 -0.34034 -0.00018439 0.084789 4.5936E-05 541.7753172793892 76.79 0.32324 80.205 79.974 80.297 3.4149 43 32 2 0 0 0 0.041849 1 19012 19012 52.268 34.133 1 83234 14052 1473 9014 9020 17203 17203 41 -0.0009585858840637229 ILAEFEMTL 9 Oxidation (M) _ILAEFEM(Oxidation (M))TL_ ILAEFEM(1)TL ILAEFEM(85)TL 0 0 1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN47_class_I_Rep_2 3 541.7755126953125 2 541.775551 1081.53655 0.3788 0.00020523 -0.31499 -0.00017065 0.063811 3.4571E-05 541.7753972171428 71.332 0.95041 74.622 74.17 75.121 3.2899 170 82 3 0 0 0 0.0067818 4 17465 17351;17390;17427;17465 115.69 75.692 1 487320 14053 1473 9014 9020 17204;17205;17206;17207 17207 41 -0.0009585858840637229 ILAEFEMTL 9 Oxidation (M) _ILAEFEM(Oxidation (M))TL_ ILAEFEM(1)TL ILAEFEM(92)TL 0 0 1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN47_class_I_Rep_3 4 541.7752685546875 2 541.775551 1081.53655 0.43162 0.00023384 -0.20336 -0.00011018 0.22825 0.00012366 541.7754306879955 71.268 0.96291 74.487 74.126 75.089 3.2188 181 79 3 0 0 0 0.0052487 5 17522 17417;17451;17486;17522;17563 128.37 83.958 1 433270 14054 1473 9014 9020 17208;17209;17210;17211;17212 17211 41 -0.0009585858840637229 ILAHMFIAAQ 10 Unmodified _ILAHMFIAAQ_ 0 0 0 L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|51|1|sense L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|51|1|sense L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|51|1|sense MSMS UPN46_class_I_Rep_3 1 557.8093872070312 2 557.807519 1113.60049 NaN NaN NaN NaN NaN NaN NaN 49.753 1 49.753 49.253 50.253 0 0 0 0 0.53105 1 10467 10467 3.9444 0 1 14055 15085 9015 9021 17213 17213 0.048229663591882854 ILAIERESF 9 Unmodified _ILAIERESF_ 0 0 0 nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 MSMS UPN46_class_I_Rep_3 1 539.3001098632812 2 539.300581 1076.58661 NaN NaN NaN NaN NaN NaN NaN 58.88 1 58.88 58.38 59.38 0 0 0 0 0.092202 1 12985 12985 26.268 3.1197 1 14056 16627 9016 9022 17214 17214 0.05138012131760661 ILAKPTGTPKW 11 Unmodified _ILAKPTGTPKW_ 0 0 0 REV__nc|ENSG00000074416|Q99685-2|MGLL REV__nc|ENSG00000074416|Q99685-2|MGLL MSMS UPN46_class_I_Rep_3 1 606.3610229492188 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 41.475 1 41.475 40.975 41.975 0 0 0 0 0.38417 1 8135 8135 0.96228 0.36078 1 + 14057 17846 9017 9023 17215 17215 0.11046839845221257 ILANSASVIIS 11 Unmodified _ILANSASVIIS_ 0 0 0 ENST00000396033.6_1_10:33200822-33200915:-|nuORF ENST00000396033.6_1_10:33200822-33200915:-|nuORF ENST00000396033.6_1_10:33200822-33200915:-|nuORF MSMS UPN46_class_I_Rep_3 1 544.31982421875 2 544.321514 1086.62847 NaN NaN NaN NaN NaN NaN NaN 34.324 1 34.324 33.824 34.824 0 0 0 0 0.38417 1 6115 6115 5.7319 0.50118 1 14058 6560 9018 9024 17216 17216 0.08862567820278855 ILAQLTAL 8 Unmodified _ILAQLTAL_ 0 0 0 REV__LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|13|2|sense REV__LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 421.769287109375 2 421.770929 841.527304 NaN NaN NaN NaN NaN NaN NaN 87.514 1 91.133 90.633 91.633 3.6187 0 0 0 0.40738 1 20970 20970 0.79363 0 1 + 14059 30937 9019 9025 17217 17217 0.10020160908209164 ILARHLYP 8 Unmodified _ILARHLYP_ 0 0 0 Harlequin-int_dup280|chr7:149571228-149572599:+|1.1160191640184918|0.0848834779973395|3.72|151.0|67|2|anti-sense Harlequin-int_dup280|chr7:149571228-149572599:+|1.1160191640184918|0.0848834779973395|3.72|151.0|67|2|anti-sense Harlequin-int_dup280|chr7:149571228-149572599:+|1.1160191640184918|0.0848834779973395|3.72|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7956237792969 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.983 1 68.462 67.962 68.962 3.4792 0 0 0 0.40604 1 14736 14736 2.5775 0.27475 1 14060 7975 9020 9026 17218 17218 0.08446074267988024 ILASVAGLEI 10 Unmodified _ILASVAGLEI_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-SECPEP UPN47_class_I_Rep_1 2 493.2984619140625 2 493.30005 984.585547 0.016034 7.9097E-06 -1.236 -0.00060972 -1.22 -0.00060181 493.29937346830803 50.232 0.62344 53.86 53.634 54.257 3.6285 47 29 2 0 0 0 0.81112 1 10992 10992 49.933 6.0747 1 86541 + 14061 19922 9021 9027 17219 17219 0.09263797762855575 ILASVAGLEI 10 Unmodified _ILASVAGLEI_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS UPN47_class_I_Rep_2 3 493.29876708984375 2 493.30005 984.585547 0.29716 0.00014659 -1.3917 -0.00068652 -1.0945 -0.00053993 493.29944993970577 50.541 0.57019 53.884 53.661 54.232 3.3431 48 29 2 0 0 0 0.52083 1 11181 11181 9.3831 0 1 96192 + 14062 19922 9021 9027 17220 17220 0.09263797762855575 ILAVRNTR 8 Unmodified _ILAVRNTR_ 0 0 0 L1M5_dup28547|chr9:33967003-33967506:-|1.0547234984002538|0.0276635943398882|5.25|151.0|1|1|sense L1M5_dup28547|chr9:33967003-33967506:-|1.0547234984002538|0.0276635943398882|5.25|151.0|1|1|sense L1M5_dup28547|chr9:33967003-33967506:-|1.0547234984002538|0.0276635943398882|5.25|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.7957458496094 2 471.795801 941.577048 -0.10636 -5.018E-05 -0.1053 -4.9681E-05 -0.21166 -9.9861E-05 471.79547226084213 58.856 0.56566 62.022 61.818 62.384 3.1658 42 32 2 0 0 0 0.82752 1 13717 13717 0.79363 0 1 383670 14063 9134 9022 9028 17221 17221 0.1039228863688777 ILAYLPLSGLP 11 Unmodified _ILAYLPLSGLP_ 0 0 0 HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|94|3|anti-sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|94|3|anti-sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|94|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 578.85302734375 2 578.85245 1155.69035 0.50618 0.000293 1.3087 0.00075757 1.8149 0.0010506 578.8529448926721 108.51 0.18829 112.05 111.87 112.06 3.5382 34 19 3 0 0 0 22.551 1 26536 26536 1.1933 0 1 3623100 14064 8172 9023 9029 17222 17222 0.11872919239408475 ILCCCECN 8 Unmodified _ILCCCECN_ 0 0 0 REV__L1PA3_dup6012|chr9:96797006-96803185:+|2.7555651840781583|0.2172485423611523|3.66|151.0|353|3|anti-sense REV__L1PA3_dup6012|chr9:96797006-96803185:+|2.7555651840781583|0.2172485423611523|3.66|151.0|353|3|anti-sense MSMS UPN47_class_I_Rep_1 2 450.65985107421875 2 450.657752 899.300951 NaN NaN NaN NaN NaN NaN NaN 59.449 1 62.847 62.347 63.347 3.3982 0 0 0 0.40581 1 13806 13806 2.8892 2.0956 1 + 14065 29518 9024 9030 17223 17223 -0.15272733580673048 ILCLLYPIA 9 Unmodified _ILCLLYPIA_ 0 0 0 L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|125|2|anti-sense L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|125|2|anti-sense L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|125|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 509.80377197265625 2 509.803914 1017.59328 0.17934 9.1426E-05 -0.70466 -0.00035924 -0.52533 -0.00026781 509.8032498021759 78.094 0.61059 81.437 81.352 81.963 3.3428 99 68 2 0 0 0 0.48414 1 19387 19387 2.3027 0 1 168500 14066 9888 9025 9031 17224 17224 0.08518233758752558 ILCMFFGFQ 9 Unmodified _ILCMFFGFQ_ 0 0 0 L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|246|3|anti-sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|246|3|anti-sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|246|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.2634887695312 2 553.264099 1104.51364 NaN NaN NaN NaN NaN NaN NaN 68.117 1 71.625 71.125 72.125 3.5077 0 0 0 0.34056 1 15599 15599 8.5933 1.304 1 14067 14160 9026 9032 17225 17225 -0.03443156186858687 ILCPLMAAV 9 Unmodified _ILCPLMAAV_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MSMS UPN47_class_I_Rep_1 2 465.7604675292969 2 465.761192 929.507831 NaN NaN NaN NaN NaN NaN NaN 79.15 1 82.596 82.096 83.096 3.4456 0 0 0 0.381 1 19709 19709 5.2307 0 1 14068 4268 9027 9033 17226 17226 0.04025745301464667 ILCPLVHGVV 10 Unmodified _ILCPLVHGVV_ 0 0 0 L1PA4_dup1606|chr2:201290545-201296670:+|3.1065127703691906|0.2266298122107168|3.78|151.0|314|3|anti-sense L1PA4_dup1606|chr2:201290545-201296670:+|3.1065127703691906|0.2266298122107168|3.78|151.0|314|3|anti-sense L1PA4_dup1606|chr2:201290545-201296670:+|3.1065127703691906|0.2266298122107168|3.78|151.0|314|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.3112182617188 2 525.312438 1048.61032 0.49009 0.00025745 -0.96577 -0.00050733 -0.47568 -0.00024988 525.3118652700048 74.881 0.27785 78.447 78.241 78.519 3.5658 56 27 3 0 0 0 0.53188 1 17573 17573 7.9102 1.5561 1 437560 14069 14327 9028 9034 17227 17227 0.08796154364586073 ILCTFNDVSY 10 Unmodified _ILCTFNDVSY_ 0 0 0 Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|70|3|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|70|3|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_1 2 587.7752075195312 2 587.776082 1173.53761 NaN NaN NaN NaN NaN NaN NaN 68.362 1 71.727 71.227 72.227 3.3646 0 0 0 0.53105 1 16498 16498 5.7319 1.4026 1 14070 33446 9029 9035 17228 17228 -0.04221644219501286 ILDCFIHLY 9 Unmodified _ILDCFIHLY_ 0 0 0 REV__L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|34|3|anti-sense REV__L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|34|3|anti-sense MSMS UPN46_class_I_Rep_3 1 568.7957763671875 2 568.794078 1135.5736 NaN NaN NaN NaN NaN NaN NaN 42.558 1 42.558 42.058 43.058 0 0 0 0 0.38478 1 8432 8432 4.3292 0.38484 1 + 14071 27560 9030 9036 17229 17229 0.011238577480298773 ILDEMWLY 8 Unmodified _ILDEMWLY_ 0 0 0 REV__L1ME3C_dup1470|chr7:131062519-131063852:+|1.3412142805036085|0.028590728160604|5.55|150.0|5|1|sense REV__L1ME3C_dup1470|chr7:131062519-131063852:+|1.3412142805036085|0.028590728160604|5.55|150.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 541.7669067382812 2 541.764986 1081.51542 NaN NaN NaN NaN NaN NaN NaN 56.266 1 59.723 59.223 60.223 3.4572 0 0 0 0.4032 1 12837 12837 6.3541 0.59368 1 + 14072 28094 9031 9037 17230 17230 -0.022078238972653708 ILDEVIFKL 9 Unmodified _ILDEVIFKL_ 0 0 0 nc|ENSG00000173226|Q15051-3|IQCB1;ENSG00000173226|ENST00000310864|IQCB1;ENSG00000173226.17,IQCB1,chr3,-,I8.1,121797228,121799195|42|9.7|2|intron;ENSG00000173226.17,IQCB1,chr3,-,I8.1,121797228,121799195|42|9.7|1|intron;ENST00000401788.2_1_6:27978946-27979378:+|nuORF nc|ENSG00000173226|Q15051-3|IQCB1 nc|ENSG00000173226|Q15051-3|IQCB1 MSMS UPN47_class_I_Rep_2 3 545.331298828125 2 545.33135 1088.64815 NaN NaN NaN NaN NaN NaN NaN 77.552 1 80.884 80.384 81.384 3.3315 0 0 0 0.3377 1 19243 19243 8.7454 0.83525 1 14073 4618 9032 9038 17231 17231 0.10736943831057033 ILDEVIFKL 9 Unmodified _ILDEVIFKL_ 0 0 0 nc|ENSG00000173226|Q15051-3|IQCB1;ENSG00000173226|ENST00000310864|IQCB1;ENSG00000173226.17,IQCB1,chr3,-,I8.1,121797228,121799195|42|9.7|2|intron;ENSG00000173226.17,IQCB1,chr3,-,I8.1,121797228,121799195|42|9.7|1|intron;ENST00000401788.2_1_6:27978946-27979378:+|nuORF nc|ENSG00000173226|Q15051-3|IQCB1 nc|ENSG00000173226|Q15051-3|IQCB1 MSMS UPN47_class_I_Rep_3 4 545.331787109375 2 545.33135 1088.64815 NaN NaN NaN NaN NaN NaN NaN 77.58 1 80.849 80.349 81.349 3.269 0 0 0 0.3377 1 19326 19326 8.7454 0.58988 1 14074 4618 9032 9038 17232 17232 0.10736943831057033 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENSG00000108559|ENST00000573584|NUP88 ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENST00000574867.5_1_17:5292093-5322970:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 510.27386474609375 2 509.81841 1017.62227 0.20183 0.00010289 -0.32455 -0.00016546 -0.12272 -6.2566E-05 509.8182460138038 69.031 0.71828 72.399 72.019 72.737 3.3678 99 54 3 0 0 0 0.031823 1 16785 16785 57.471 27.247 1 296760 14075 1868 9033 9039 17233 17233 0.11416094379421793 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENSG00000108559|ENST00000573584|NUP88 ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENST00000574867.5_1_17:5292093-5322970:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 509.818603515625 2 509.81841 1017.62227 0.26376 0.00013447 -0.23314 -0.00011886 0.030623 1.5612E-05 509.81820427046654 69.341 0.92645 72.545 72.194 73.12 3.2044 147 71 3 0 0 0 0.090595 1 17020 17020 36.044 1.9418 1 314850 14076 1868 9033 9039 17234 17234 0.11416094379421793 ILDQKINEV 9 Unmodified _ILDQKINEV_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MSMS UPN46_class_I_Rep_3 1 536.3068237304688 2 536.305864 1070.59717 NaN NaN NaN NaN NaN NaN NaN 47.13 1 47.13 46.63 47.63 0 0 0 0 0.035625 1 9721 9721 42.312 6.1855 1 14077 2139 9034 9040 17235 17235 0.06469994786175448 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN46_class_I_Rep_3 1 480.75323486328125 2 480.753464 959.492375 0.24832 0.00011938 -0.22051 -0.00010601 0.02781 1.337E-05 480.7532564325088 43.247 0.46075 43.247 43.082 43.543 0 68 40 2 0 0 0 0.062142 3 8664 8628;8636;8664 43.772 13.932 1 340080 14078 3641 9035 9041 17236;17237;17238 17238 0.011008733096105061 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN47_class_I_Rep_1 2 480.7532958984375 2 480.753464 959.492375 -0.2824 -0.00013577 -0.22499 -0.00010816 -0.5074 -0.00024393 480.7534388644928 39.992 0.6947 43.658 43.35 44.044 3.6668 113 49 3 0 0 0 0.038999 3 7867 7824;7867;7907 53.404 16.898 1 240820 14079 3641 9035 9041 17239;17240;17241 17240 0.011008733096105061 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN47_class_I_Rep_2 3 480.7532653808594 2 480.753464 959.492375 -0.217 -0.00010432 -0.34411 -0.00016543 -0.56111 -0.00026976 480.7533790855214 40.241 0.75792 43.613 43.336 44.094 3.3712 111 49 3 0 0 0 0.053261 4 7987 7930;7987;8024;8068 47.594 10.399 1 251380 14080 3641 9035 9041 17242;17243;17244;17245 17243 0.011008733096105061 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MSMS UPN47_class_I_Rep_3 4 480.7532958984375 2 480.753464 959.492375 -0.37548 -0.00018051 -0.24863 -0.00011953 -0.62411 -0.00030004 480.75342466369 40.308 0.80827 43.545 43.244 44.053 3.2372 115 51 3 0 0 0 0.022868 3 8057 8016;8057;8101 61.602 19.646 1 243410 14081 3641 9035 9041 17246;17247;17248 17247 0.011008733096105061 ILDQTNVSA 9 Unmodified _ILDQTNVSA_ 0 0 0 ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU ENSG00000153187|ENST00000640218|HNRNPU MULTI-MATCH UPN46_class_I_Rep_3 1 2 480.753464 959.492375 0.24681 0.00011866 -0.56788 -0.00027301 -0.32106 -0.00015435 480.7534090723224 43.632 0.05595 43.632 43.596 43.651 0 0.019963 -0.00027245 NaN 61.602 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 58896 14082 3641 9035 9041 0.011008733096105061 ILDSRLIAA 9 Unmodified _ILDSRLIAA_ 0 0 0 ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 MULTI-SECPEP UPN47_class_I_Rep_2 3 486.79949951171875 2 486.297842 970.581131 0.27048 0.00013153 -0.1756 -8.5394E-05 0.094883 4.6141E-05 486.29771762227364 50.882 0.57569 54.22 53.862 54.438 3.3386 50 31 2 0 0 0 0.12026 1 11157 11157 8.1555 2.4237 1 108470 14083 5016 9036 9042 17249 17249 0.09466333339935318 ILDVHYCYS 9 Unmodified _ILDVHYCYS_ 0 0 0 REV__ENSG00000176925|ENST00000322110|OR51F2 REV__ENSG00000176925|ENST00000322110|OR51F2 MULTI-MSMS UPN47_class_I_Rep_1 2 556.7571411132812 2 556.757692 1111.50083 0.21253 0.00011833 -0.24632 -0.00013714 -0.033791 -1.8814E-05 556.7575402886624 48.466 0.84968 52.148 51.757 52.607 3.6819 109 52 3 0 0 0 0.32219 2 10528 10528;10574 12.532 0 1 229220 + 14084 20602 9037 9043 17250;17251 17250 -0.050458960454079715 ILDVHYCYS 9 Unmodified _ILDVHYCYS_ 0 0 0 REV__ENSG00000176925|ENST00000322110|OR51F2 REV__ENSG00000176925|ENST00000322110|OR51F2 MULTI-MSMS UPN47_class_I_Rep_2 3 557.259765625 2 556.757692 1111.50083 0.38333 0.00021342 -0.32931 -0.00018335 0.054018 3.0075E-05 556.7574599617583 48.78 0.80945 52.127 51.836 52.646 3.3465 94 49 3 0 0 0 0.32219 2 10637 10637;10697 12.532 0 1 223990 + 14085 20602 9037 9043 17252;17253 17252 -0.050458960454079715 ILDVHYCYS 9 Unmodified _ILDVHYCYS_ 0 0 0 REV__ENSG00000176925|ENST00000322110|OR51F2 REV__ENSG00000176925|ENST00000322110|OR51F2 MULTI-MSMS UPN47_class_I_Rep_3 4 556.7572631835938 2 556.757692 1111.50083 0.42633 0.00023737 -0.45202 -0.00025166 -0.025683 -1.4299E-05 556.7573381661855 48.817 0.88142 52.051 51.784 52.666 3.2345 85 51 2 0 0 0 0.25207 4 10621 10621;10739;10764;10807 16.942 0 1 223630 + 14086 20602 9037 9043 17254;17255;17256;17257 17254 -0.050458960454079715 ILEDPKVK 8 Unmodified _ILEDPKVK_ 0 0 0 MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|29|3|anti-sense MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|29|3|anti-sense MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 471.2872619628906 2 471.286943 940.559333 -0.37089 -0.0001748 -0.23876 -0.00011252 -0.60965 -0.00028732 471.2869785274117 21.609 0.21238 25.284 25.196 25.409 3.6749 32 22 2 0 0 0 0.82752 1 2368 2368 0.69038 0 1 33867 14087 15743 9038 9044 17258 17258 0.0866752859137705 ILEKHILY 8 Unmodified _ILEKHILY_ 0 0 0 REV__ENSG00000119698|ENST00000304338|PPP4R4 REV__ENSG00000119698|ENST00000304338|PPP4R4 MSMS UPN47_class_I_Rep_3 4 514.8106689453125 2 514.810585 1027.60662 NaN NaN NaN NaN NaN NaN NaN 62.575 1 65.744 65.244 66.244 3.1698 0 0 0 0.4032 1 14845 14845 6.3541 0 1 + 14088 18682 9039 9045 17259 17259 0.0939180786238012 ILELKLEL 8 Unmodified _ILELKLEL_ 0 0 0 HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 485.8110046386719 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 114.07 1 117.58 117.08 118.08 3.5109 0 0 0 0.40604 1 27765 27765 2.5775 0 1 14089 8402 9040 9046 17260 17260 0.12501272285260256 ILELKLEL 8 Unmodified _ILELKLEL_ 0 0 0 HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 485.81170654296875 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 113.12 1 116.63 116.13 117.13 3.5098 0 0 0 0.40604 1 27740 27740 2.5775 0 1 14090 8402 9040 9046 17261 17261 0.12501272285260256 ILELKLEL 8 Unmodified _ILELKLEL_ 0 0 0 HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 485.8116455078125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 111.64 1 115.31 114.81 115.81 3.6666 0 0 0 0.40604 1 26560 26560 2.5775 0 1 14091 8402 9040 9046 17262 17262 0.12501272285260256 ILELKLEL 8 Unmodified _ILELKLEL_ 0 0 0 HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 485.8121032714844 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 119.22 1 122.88 122.38 123.38 3.6652 0 0 0 0.40604 1 28608 28608 2.5775 0 1 14092 8402 9040 9046 17263 17263 0.12501272285260256 ILELKLEL 8 Unmodified _ILELKLEL_ 0 0 0 HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 485.8118896484375 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 114.42 1 118.07 117.57 118.57 3.6511 0 0 0 0.40604 1 27202 27202 2.5775 0 1 14093 8402 9040 9046 17264 17264 0.12501272285260256 ILEMKNTVTKI 11 Unmodified _ILEMKNTVTKI_ 0 0 0 L1M4a2_dup1397|chr11:66145067-66146764:+|4.44045462888747|0.0432638292444369|6.68|151.0|36|2|sense L1M4a2_dup1397|chr11:66145067-66146764:+|4.44045462888747|0.0432638292444369|6.68|151.0|36|2|sense L1M4a2_dup1397|chr11:66145067-66146764:+|4.44045462888747|0.0432638292444369|6.68|151.0|36|2|sense MSMS UPN46_class_I_Rep_3 1 645.3790893554688 2 645.378506 1288.74246 NaN NaN NaN NaN NaN NaN NaN 71.197 1 71.197 70.697 71.697 0 0 0 0 0.38417 1 16391 16391 4.5289 2.0304 1 14094 8968 9041 9047 17265 17265 0.10963714590866402 ILERKPISK 9 Unmodified _ILERKPISK_ 0 0 0 REV__L1ME3G_dup6905|chr7:38351153-38351421:+|1.095485831533998|0.055481988020477|4.3|149.0|19|3|anti-sense REV__L1ME3G_dup6905|chr7:38351153-38351421:+|1.095485831533998|0.055481988020477|4.3|149.0|19|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 541.7539672851562 2 542.347866 1082.68118 0.32207 0.00017468 0.35505 0.00019256 0.67712 0.00036723 542.3479521073724 58.34 0.093338 61.506 61.482 61.575 3.1658 6 4 2 0 0 0 0.12321 1 13550 13550 3.9444 0.94915 1 41014 + 14095 28200 9042 9048 17266 17266 0.143145706737414 ILFAYRYLRIN 11 Unmodified _ILFAYRYLRIN_ 0 0 0 REV__Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|56|2|anti-sense REV__Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|56|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 481.2828063964844 3 481.281995 1440.82415 0.26982 0.00012986 2.4685 0.0011881 2.7383 0.0013179 481.2830227886065 97.43 0.1549 97.43 97.391 97.546 0 21 15 2 0 0 0 0.66974 1 23704 23704 1.4551 0.12547 1 190840 + 14096 32626 9043 9049 17267 17267 0.12137578064971422 ILFAYRYLRIN 11 Unmodified _ILFAYRYLRIN_ 0 0 0 REV__Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|56|2|anti-sense REV__Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|56|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 481.281995 1440.82415 0.26982 0.00012986 2.4685 0.0011881 2.7383 0.0013179 481.2830227886065 97.43 0.1549 97.43 97.391 97.546 0 0.080982 -0.00031312 NaN 1.4551 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 190840 + 14097 32626 9043 9049 0.12137578064971422 ILFAYRYLRIN 11 Unmodified _ILFAYRYLRIN_ 0 0 0 REV__Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|56|2|anti-sense REV__Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|56|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 481.281995 1440.82415 0.11931 5.7422E-05 2.5665 0.0012352 2.6858 0.0012926 481.28319203763294 93.739 0.080048 97.359 97.304 97.384 3.6208 0.010572 -0.00017173 NaN 1.4551 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 150590 + 14098 32626 9043 9049 0.12137578064971422 ILFDFYLLHKH 11 Unmodified _ILFDFYLLHKH_ 0 0 0 REV__L1PB3_dup1501|chr7:107502023-107504941:-|4.080127850017205|0.0597867171082652|6.09|151.0|179|3|anti-sense REV__L1PB3_dup1501|chr7:107502023-107504941:-|4.080127850017205|0.0597867171082652|6.09|151.0|179|3|anti-sense MSMS UPN47_class_I_Rep_1 2 482.60333251953125 3 482.602845 1444.78671 NaN NaN NaN NaN NaN NaN NaN 30 1 33.745 33.245 34.245 3.7449 0 0 0 0.38417 1 4844 4844 1.4551 0 1 + 14099 30543 9044 9050 17268 17268 0.08210486799339378 ILFDYFKL 8 Unmodified _ILFDYFKL_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|183|3|anti-sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|183|3|anti-sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|183|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.8082275390625 2 529.799686 1057.58482 NaN NaN NaN NaN NaN NaN NaN 68.367 1 71.732 71.232 72.232 3.3646 0 0 0 0.36226 1 16500 16500 19.257 0 1 14100 8618 9045 9051 17269 17269 0.058330031137984406 ILFFKFPF 8 Unmodified _ILFFKFPF_ 0 0 0 L1MA9_dup8628|chr9:40965381-40966742:-|1.955140887323713|0.1279977796977875|3.93|151.0|105|3|anti-sense L1MA9_dup8628|chr9:40965381-40966742:-|1.955140887323713|0.1279977796977875|3.93|151.0|105|3|anti-sense L1MA9_dup8628|chr9:40965381-40966742:-|1.955140887323713|0.1279977796977875|3.93|151.0|105|3|anti-sense MSMS UPN48_class_I_Rep_1 5 529.8052978515625 2 529.807314 1057.60008 NaN NaN NaN NaN NaN NaN NaN 30.976 1 34.511 34.011 35.011 3.5342 0 0 0 0.40581 1 4523 4523 2.8892 0 1 14101 10160 9046 9052 17270 17270 0.0735791470165168 ILFFKMNF 8 Unmodified _ILFFKMNF_ 0 0 0 ENST00000209875.8_1_12:54634211-54634445:-|nuORF ENST00000209875.8_1_12:54634211-54634445:-|nuORF ENST00000209875.8_1_12:54634211-54634445:-|nuORF MSMS UPN48_class_I_Rep_1 5 530.289306640625 2 530.288431 1058.56231 NaN NaN NaN NaN NaN NaN NaN 119.88 1 123.5 123 124 3.6189 0 0 0 0.40738 1 29268 29268 0.79363 0 1 14102 5859 9047 9053 17271 17271 0.03537080444539242 ILFHRKPF 8 Unmodified _ILFHRKPF_ 0 0 0 REV__THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant REV__THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant MSMS UPN47_class_I_Rep_3 4 529.290283203125 2 529.318912 1056.62327 NaN NaN NaN NaN NaN NaN NaN 65.194 1 68.373 67.873 68.873 3.1795 0 0 0 0.40364 1 15642 15642 5.7604 2.8712 1 + 14103 20455 9048 9054 17272 17272 0.09722353538995776 ILFIIFSRRFF 11 Unmodified _ILFIIFSRRFF_ 0 0 0 REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|111|2|anti-sense REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|111|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.2931213378906 3 486.958852 1457.85473 0.28551 0.00013903 0.031841 1.5505E-05 0.31736 0.00015454 487.2931784543425 98.135 0.073303 98.135 98.085 98.159 0 10 6 2 0 0 0 0.68081 1 23900 23900 0.45452 0.35968 1 115290 + 14104 23519 9049 9055 17273 17273 0.14411356450000312 ILFKNWRHR 9 Unmodified _ILFKNWRHR_ 0 0 0 ENST00000274071.6_1_4:157892226-157892268:-|nuORF ENST00000274071.6_1_4:157892226-157892268:-|nuORF ENST00000274071.6_1_4:157892226-157892268:-|nuORF MSMS UPN46_class_I_Rep_3 1 635.039306640625 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 107.02 1 107.02 106.52 107.52 0 0 0 0 0.4007 1 26105 26105 0.52476 0 1 14105 6016 9050 9056 17274 17274 0.10183019610576594 ILFPILQTV 9 Unmodified _ILFPILQTV_ 0 0 0 L1MA9_dup1966|chr2:181477134-181478447:+|2.060691975609967|0.0420048871547498|5.62|150.0|87|3|anti-sense L1MA9_dup1966|chr2:181477134-181478447:+|2.060691975609967|0.0420048871547498|5.62|150.0|87|3|anti-sense L1MA9_dup1966|chr2:181477134-181478447:+|2.060691975609967|0.0420048871547498|5.62|150.0|87|3|anti-sense MSMS UPN47_class_I_Rep_1 2 522.3286743164062 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 103.37 1 107.15 106.65 107.65 3.7788 0 0 0 0.29868 1 25415 25415 10.824 0 1 14106 10126 9051 9057 17275 17275 0.1230526503920828 ILFRRTDVLL 10 Unmodified _ILFRRTDVLL_ 0 0 0 REV__nc|ENSG998|Q9N2K0|HERV-H-ENH1 REV__nc|ENSG998|Q9N2K0|HERV-H-ENH1 MULTI-MSMS UPN47_class_I_Rep_2 3 623.3887939453125 2 623.387522 1244.76049 0.63471 0.00039567 0.47173 0.00029407 1.1064 0.00068974 623.3876781048372 108.68 0.83012 112.21 112.11 112.94 3.5333 205 98 4 0 0 0 0.54466 1 26358 26358 6.2058 0.9089 1 31049000 + 14107 32141 9052 9058 17276 17276 0.14790217627887614 ILFSFLFLKTK 11 Unmodified _ILFSFLFLKTK_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.9482116699219 3 452.947842 1355.8217 0.19303 8.7433E-05 0.8351 0.00037826 1.0281 0.00046569 452.948169346583 106.18 0.10585 106.18 106.16 106.26 0 16 10 3 0 0 0 0.68478 1 25897 25897 0.094841 0 1 395950 + 14108 31330 9053 9059 17277 17277 0.1580172960730124 ILFSFLFLKTK 11 Unmodified _ILFSFLFLKTK_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 452.947842 1355.8217 0.19303 8.7433E-05 0.8351 0.00037826 1.0281 0.00046569 452.948169346583 106.18 0.10585 106.18 106.16 106.26 0 0.0007642 -0.00057176 NaN 0.094841 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 395950 + 14109 31330 9053 9059 0.1580172960730124 ILFSFLFLKTK 11 Unmodified _ILFSFLFLKTK_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 452.947842 1355.8217 0.18671 8.4572E-05 0.88809 0.00040226 1.0748 0.00048683 453.28258479170773 102.38 0.10326 106.16 106.14 106.24 3.7888 -0.01104 -0.00049976 NaN 0.094841 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 155250 + 14110 31330 9053 9059 0.1580172960730124 ILFSFLFLKTK 11 Unmodified _ILFSFLFLKTK_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 452.947842 1355.8217 -0.14934 -6.7642E-05 1.6251 0.00073607 1.4757 0.00066843 452.9484239809332 102.72 0.025528 106.22 106.21 106.23 3.5057 0.049124 0.00050168 NaN 0.094841 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 258870 + 14111 31330 9053 9059 0.1580172960730124 ILFSFLFLKTK 11 Unmodified _ILFSFLFLKTK_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 452.947842 1355.8217 0.15841 7.1752E-05 1.5389 0.00069702 1.6973 0.00076877 452.9481112709033 102.44 0.059677 106.16 106.13 106.19 3.7252 -0.01355 0.00038454 NaN 0.094841 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 65627 + 14112 31330 9053 9059 0.1580172960730124 ILFSFLFLKTK 11 Unmodified _ILFSFLFLKTK_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|57|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 452.947842 1355.8217 0.17067 7.7304E-05 1.6721 0.00075736 1.8427 0.00083466 452.94860804347576 102.37 0.1389 106.15 106.1 106.24 3.776 -0.025298 0.00056554 NaN 0.094841 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 834580 + 14113 31330 9053 9059 0.1580172960730124 ILFTHFLM 8 Unmodified _ILFTHFLM_ 0 0 0 L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|154|2|anti-sense L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|154|2|anti-sense L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|154|2|anti-sense MSMS UPN48_class_I_Rep_3 7 511.2810974121094 2 511.280606 1020.54666 NaN NaN NaN NaN NaN NaN NaN 27.949 1 31.692 31.192 32.192 3.7424 0 0 0 0.40604 1 3738 3738 2.5775 0 1 14114 14657 9054 9060 17278 17278 0.0372079392749356 ILFYAFFC 8 Unmodified _ILFYAFFC_ 0 0 0 REV__L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|73|2|anti-sense REV__L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|73|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.25341796875 2 512.254057 1022.49356 0.028302 1.4498E-05 0.0038359 1.9649E-06 0.032138 1.6463E-05 512.2540504059606 47.414 0.97311 51.109 50.685 51.659 3.6951 154 86 2 0 0 0 0.82752 1 10062 10062 11.114 1.767 1 444680 + 14115 25395 9055 9061 17279 17279 -0.016785838551868437 ILFYAFFC 8 Unmodified _ILFYAFFC_ 0 0 0 REV__L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|73|2|anti-sense REV__L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|73|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.2538452148438 2 512.254057 1022.49356 0.0052895 2.7096E-06 0.043399 2.2231E-05 0.048688 2.4941E-05 512.2540534295193 47.646 1.1801 50.995 50.593 51.773 3.3492 170 93 2 0 0 0 0.82752 3 10198 10198;10231;10259 11.114 11.114 1 554070 + 14116 25395 9055 9061 17280;17281;17282 17280 -0.016785838551868437 ILFYAFFC 8 Unmodified _ILFYAFFC_ 0 0 0 REV__L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|73|2|anti-sense REV__L1MA5_dup3869|chr16:14536803-14538092:+|1.5035357587594504|0.107903212450465|3.8|151.0|73|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 512.3131103515625 2 512.254057 1022.49356 0.0052895 2.7096E-06 0.043399 2.2231E-05 0.048688 2.4941E-05 512.2540534295193 47.646 1.1801 50.995 50.593 51.773 3.3492 170 93 2 0 0 0 0.72333 1 10141 10141 6.3541 6.3541 1 554070 + 14117 25395 9055 9061 17283 17283 -0.016785838551868437 ILGHFCGHPL 10 Unmodified _ILGHFCGHPL_ 0 0 0 REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|58|2|anti-sense REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|58|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.28515625 2 547.284211 1092.55387 NaN NaN NaN NaN NaN NaN NaN 73.039 1 76.336 75.836 76.836 3.2971 0 0 0 0.53105 1 17937 17937 7.9102 0.62092 1 + 14118 32262 9056 9062 17284 17284 0.011295265279159139 ILGMLWLPLR 10 Unmodified _ILGMLWLPLR_ 0 0 0 REV__ENST00000357028.6_1_9:134735684-134735831:-|nuORF REV__ENST00000357028.6_1_9:134735684-134735831:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 404.58221435546875 3 404.582617 1210.72602 -0.11371 -4.6005E-05 -0.3385 -0.00013695 -0.45221 -0.00018296 404.5826067396632 33.729 0.2689 33.729 33.637 33.906 0 27 19 2 0 0 0 0.54078 1 5912 5912 3.5871 1.5031 1 59194 + 14119 21872 9057 9063 17285 17285 0.12908678215444525 ILGPPGSVY 9 Unmodified _ILGPPGSVY_ 0 0 0 ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3 ENST00000493707.1_1_3:23907959-23932094:+|nuORF ENST00000493707.1_1_3:23907959-23932094:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 451.753662109375 2 451.752736 901.490919 0.11874 5.3641E-05 0.045977 2.077E-05 0.16472 7.4411E-05 451.7526069487014 62.047 0.80285 62.047 61.652 62.454 0 165 75 3 0 0 0 0.0055873 6 13767 13764;13767;13807;13845;13877;13914 123.1 78.689 1 972860 14120 4451 9058 9064 17286;17287;17288;17289;17290;17291 17287 0.03623284011530359 ILGPPPPSFHL 11 Unmodified _ILGPPPPSFHL_ 0 0 0 ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3 ENST00000511978.5_1_5:138651425-138655027:+|nuORF ENST00000511978.5_1_5:138651425-138655027:+|nuORF MSMS UPN47_class_I_Rep_3 4 587.8352661132812 2 587.834591 1173.65463 NaN NaN NaN NaN NaN NaN NaN 67.358 1 70.549 70.049 71.049 3.1914 0 0 0 0.38417 1 16304 16304 2.7352 0 1 14121 798 9059 9065 17292 17292 0.07474881782422926 ILGRGLLLPEM 11 Unmodified _ILGRGLLLPEM_ 0 0 0 REV__nc|ENSG00000134121|O00533|CHL1 REV__nc|ENSG00000134121|O00533|CHL1 MULTI-MSMS UPN46_class_I_Rep_3 1 606.3605346679688 2 606.362659 1210.71076 0.39681 0.00024061 -2.6706 -0.0016193 -2.2738 -0.0013787 606.3607344615524 32.354 0.086201 32.354 32.285 32.371 0 10 6 2 0 0 0 0.68244 1 5517 5517 0.30703 0.30703 1 249760 + 14122 19085 9060 9066 17293 17293 0.11383766627568548 ILGSPPRPSG 10 Unmodified _ILGSPPRPSG_ 0 0 0 REV__MER77_dup1083|chr16:85705248-85705761:+|1.3446280517011844|0.0472633484273714|4.83|151.0|24|2|anti-sense REV__MER77_dup1083|chr16:85705248-85705761:+|1.3446280517011844|0.0472633484273714|4.83|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_2 3 490.7816162109375 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 27.779 1 31.278 30.778 31.778 3.4986 0 0 0 0.53105 1 4221 4221 1.4819 0 1 + 14123 31558 9061 9067 17294 17294 0.05448876163097793 ILGWPIVSPLT 11 Unmodified _ILGWPIVSPLT_ 0 0 0 REV__ENSG00000154237|ENST00000388948|LRRK1 REV__ENSG00000154237|ENST00000388948|LRRK1 MSMS UPN48_class_I_Rep_2 6 598.3577880859375 2 598.357899 1194.70125 NaN NaN NaN NaN NaN NaN NaN 83.295 1 86.977 86.477 87.477 3.6814 0 0 0 0.38417 1 19792 19792 1.4819 0 1 + 14124 19733 9062 9068 17295 17295 0.11168321613695298 ILHDDEVTV 9 Unmodified _ILHDDEVTV_ 0 0 0 ENSG00000137818|ENST00000260379|RPLP1;ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1 ENSG00000137818|ENST00000260379|RPLP1 ENSG00000137818|ENST00000260379|RPLP1 MULTI-MSMS UPN46_class_I_Rep_3 1 520.766357421875 2 520.766571 1039.51859 0.29872 0.00015556 -0.13508 -7.0345E-05 0.16364 8.5217E-05 520.7663932289662 44.969 0.96408 44.969 44.692 45.656 0 203 89 3 0 0 0 0.051515 2 9092 9092;9145 48.346 22.078 1 1648000 14125 3045 9063 9069 17296;17297 17296 0.00041142481086353655 ILHDWNELAW 10 Unmodified _ILHDWNELAW_ 0 0 0 REV__HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|159|3|sense REV__HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|159|3|sense MSMS UPN48_class_I_Rep_2 6 432.8854064941406 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 105.39 1 109.08 108.58 109.58 3.6901 0 0 0 0.53105 1 24928 24928 0.62683 0 1 + 14126 23763 9064 9070 17298 17298 -0.006117980909493781 ILHERSNR 8 Unmodified _ILHERSNR_ 0 0 0 REV__HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|12|1|sense REV__HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 513.2741088867188 2 512.785964 1023.55738 NaN NaN NaN NaN NaN NaN NaN 60.033 1 63.198 62.698 63.698 3.1651 0 0 0 0.40659 1 14068 14068 1.8442 0 1 + 14127 23438 9065 9071 17299 17299 0.046539126261336605 ILHHLSKKM 9 Unmodified _ILHHLSKKM_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MSMS UPN47_class_I_Rep_2 3 553.8306884765625 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 82.329 1 85.728 85.228 86.228 3.3984 0 0 0 0.39326 1 20522 20522 2.3027 0.24298 1 + 14128 32091 9066 9072 17300 17300 0.09442361487435846 ILHKRKIRGKV 11 Unmodified _ILHKRKIRGKV_ 0 0 0 ENST00000430298.6_1_19:12222347-12224207:+|nuORF ENST00000430298.6_1_19:12222347-12224207:+|nuORF ENST00000430298.6_1_19:12222347-12224207:+|nuORF MSMS UPN46_class_I_Rep_3 1 450.1967468261719 3 449.973496 1346.89866 NaN NaN NaN NaN NaN NaN NaN 99.157 1 99.157 98.657 99.657 0 0 0 0 0.38417 1 24151 24151 0 0 1 14129 6721 9067 9073 17301 17301 0.23908385666982213 ILHMAWRV 8 Unmodified _ILHMAWRV_ 0 0 0 L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|79|2|sense L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|79|2|sense L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|79|2|sense MSMS UPN46_class_I_Rep_3 1 513.2905883789062 2 513.289297 1024.56404 NaN NaN NaN NaN NaN NaN NaN 80.334 1 80.334 79.834 80.834 0 0 0 0 0.39408 1 18920 18920 10.183 1.5901 1 14130 14525 9068 9074 17302 17302 0.052741342531362534 ILHMFWTL 8 Unmodified _ILHMFWTL_ 0 0 0 L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|72|2|anti-sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|72|2|anti-sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_1 2 530.7879028320312 2 530.786056 1059.55756 NaN NaN NaN NaN NaN NaN NaN 77.282 1 80.697 80.197 81.197 3.4149 0 0 0 0.38547 1 19167 19167 13.508 3.434 1 14131 10661 9069 9075 17303 17303 0.03016196301769014 ILHYNELCI 9 Unmodified _ILHYNELCI_ 0 0 0 L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|22|1|sense L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|22|1|sense L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.2879028320312 2 559.289159 1116.56377 0.048325 2.7027E-05 -0.58087 -0.00032487 -0.53254 -0.00029785 559.2887227235102 15.143 0.39217 18.529 18.339 18.731 3.3864 58 43 2 0 0 0 0.48643 1 769 769 2.0598 0.21551 1 24747 14132 10639 9070 9076 17304 17304 0.010146697426080209 ILHYRMRT 8 Unmodified _ILHYRMRT_ 0 0 0 REV__L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|111|3|sense REV__L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|111|3|sense MSMS UPN48_class_I_Rep_2 6 545.3020629882812 2 545.302936 1088.59132 NaN NaN NaN NaN NaN NaN NaN 57.197 1 60.711 60.211 61.211 3.5142 0 0 0 0.40625 1 12351 12351 2.3027 0 1 + 14133 29391 9071 9077 17305 17305 0.0505661779352522 ILIALCIDR 9 Unmodified _ILIALCIDR_ 0 0 0 L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|39|2|anti-sense L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|39|2|anti-sense L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_3 7 515.3098754882812 2 515.309895 1028.60524 NaN NaN NaN NaN NaN NaN NaN 90.477 1 94.324 93.824 94.824 3.847 0 0 0 0.40038 1 21471 21471 0.6015 0 1 14134 10573 9072 9078 17306 17306 0.09207850501934445 ILIDPFHK 8 Unmodified _ILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MSMS UPN48_class_I_Rep_1 5 491.78936767578125 2 491.789653 981.564752 NaN NaN NaN NaN NaN NaN NaN 60.946 1 64.42 63.92 64.92 3.4737 0 0 0 0.27177 1 13523 13523 36.127 10.728 1 14135 4689 9073 9079 17307 17307 0.07323252173853234 ILIDPFHK 8 Unmodified _ILIDPFHK_ 0 0 0 ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF ENSG00000174748|ENST00000307839|RPL15 ENSG00000174748|ENST00000307839|RPL15 MSMS UPN48_class_I_Rep_1 5 491.7955627441406 2 491.789653 981.564752 NaN NaN NaN NaN NaN NaN NaN 60.993 1 64.467 63.967 64.967 3.4737 0 0 0 0.26294 1 13537 13537 37.974 5.6685 1 14136 4689 9073 9079 17308 17308 0.07323252173853234 ILIEPKAQGY 10 Unmodified _ILIEPKAQGY_ 0 0 0 REV__MER58A_dup10129|chr14:34868098-34868312:+|1.069903311964307|0.0391160869890028|4.77|151.0|1|1|sense REV__MER58A_dup10129|chr14:34868098-34868312:+|1.069903311964307|0.0391160869890028|4.77|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 566.2749633789062 2 566.324057 1130.63356 0.29707 0.00016824 -0.051909 -2.9397E-05 0.24516 0.00013884 566.3238017984844 53.729 0.5327 57.313 57.092 57.625 3.5836 65 40 3 0 0 0 0.84575 1 11297 11297 3.2813 3.2813 1 147930 + 14137 31456 9074 9080 17309 17309 0.07346871682921119 ILIFFLLGVHP 11 Unmodified _ILIFFLLGVHP_ 0 0 0 L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|92|1|anti-sense L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|92|1|anti-sense L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|92|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.8931274414062 2 634.891909 1267.76927 0.51356 0.00032606 1.7812 0.0011309 2.2948 0.0014569 634.8927114424824 98.265 0.20894 101.7 101.53 101.74 3.4328 43 27 2 0 0 0 0.66945 1 24348 24348 1.4819 0 1 182600 14138 9342 9075 9081 17310 17310 0.14609191264389665 ILIKIIKLVKE 11 Unmodified _ILIKIIKLVKE_ 0 0 0 REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 437.310791015625 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 61.519 1 64.778 64.278 65.278 3.2594 0 0 0 0.38417 1 14467 14467 0.094841 0 1 + 14139 23490 9076 9082 17311 17311 0.26874564566810477 ILIKIIKLVKE 11 Unmodified _ILIKIIKLVKE_ 0 0 0 REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 437.3106384277344 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 61.774 1 65.034 64.534 65.534 3.2594 0 0 0 0.38417 1 14545 14545 0 0 1 + 14140 23490 9076 9082 17312 17312 0.26874564566810477 ILIKIIKLVKE 11 Unmodified _ILIKIIKLVKE_ 0 0 0 REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense MSMS UPN48_class_I_Rep_2 6 437.3108215332031 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 62.306 1 65.78 65.28 66.28 3.4738 0 0 0 0.38417 1 13913 13913 0 0 1 + 14141 23490 9076 9082 17313 17313 0.26874564566810477 ILIKIIKLVKE 11 Unmodified _ILIKIIKLVKE_ 0 0 0 REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense REV__HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense MSMS UPN48_class_I_Rep_3 7 437.2757568359375 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 60.6 1 64.113 63.613 64.613 3.5128 0 0 0 0.38417 1 13328 13328 0 0 1 + 14142 23490 9076 9082 17314 17314 0.26874564566810477 ILIKQKRK 8 Unmodified _ILIKQKRK_ 0 0 0 REV__L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|171|3|sense REV__L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|171|3|sense MSMS UPN47_class_I_Rep_2 3 513.861572265625 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 108.41 1 111.95 111.45 112.45 3.5333 0 0 0 0.40625 1 26295 26295 2.3027 0 1 + 14143 26411 9077 9083 17315 17315 0.19550884635896182 ILILIWPNYQ 10 Unmodified _ILILIWPNYQ_ 0 0 0 L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|78|3|anti-sense L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|78|3|anti-sense L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|78|3|anti-sense MSMS UPN46_class_I_Rep_3 1 636.871826171875 2 636.871174 1271.72779 NaN NaN NaN NaN NaN NaN NaN 78.944 1 78.944 78.444 79.444 0 0 0 0 0.53105 1 18518 18518 0.45834 0 1 14144 12356 9078 9084 17316 17316 0.10280010505039172 ILILTRKR 8 Unmodified _ILILTRKR_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 506.8528747558594 2 506.853119 1011.69168 0.31596 0.00016015 0.17851 9.0476E-05 0.49447 0.00025062 506.8531766181979 108.68 0.30484 108.68 108.47 108.77 0 64 34 3 0 0 0 0.82752 3 26532 26532;26575;26612 2.8892 0 1 8486300 14145 10196 9079 9085 17317;17318;17319 17317 0.18630598118841135 ILILTRKR 8 Unmodified _ILILTRKR_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 506.8531494140625 2 506.853119 1011.69168 0.31529 0.0001598 0.12056 6.1105E-05 0.43584 0.00022091 506.85307937253265 108.25 0.62433 111.79 111.33 111.95 3.5382 130 68 4 0 0 0 0.82752 2 26413 26413;26455 2.8892 0 1 32446000 14146 10196 9079 9085 17320;17321 17320 0.18630598118841135 ILILTRKR 8 Unmodified _ILILTRKR_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 506.85321044921875 2 506.853119 1011.69168 0.31471 0.00015951 0.15367 7.7887E-05 0.46838 0.0002374 506.8531063617247 108.38 0.24768 111.92 111.87 112.12 3.5382 36 27 2 0 0 0 0.72333 1 26545 26545 0.79363 0 1 21649000 14147 10196 9079 9085 17322 17322 0.18630598118841135 ILILTRKR 8 Unmodified _ILILTRKR_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.8529968261719 2 506.853119 1011.69168 0.21433 0.00010864 0.069679 3.5317E-05 0.28401 0.00014395 506.85303945292736 108.25 0.40982 111.88 111.79 112.2 3.6313 81 37 5 0 0 0 0.82752 1 26154 26154 0.79363 0 1 12772000 14148 10196 9079 9085 17323 17323 0.18630598118841135 ILILTRKR 8 Unmodified _ILILTRKR_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8529357910156 2 506.853119 1011.69168 0.27251 0.00013812 0.16475 8.3504E-05 0.43726 0.00022163 506.8530949633756 108.24 0.53003 111.92 111.67 112.2 3.6813 144 54 4 0 0 0 0.82752 2 25516 25516;25605 2.8892 0 1 60967000 14149 10196 9079 9085 17324;17325 17324 0.18630598118841135 ILILTRKR 8 Unmodified _ILILTRKR_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|10|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 506.853119 1011.69168 0.27251 0.00013812 0.16475 8.3504E-05 0.43726 0.00022163 506.8530949633756 108.24 0.53003 111.92 111.67 112.2 3.6813 -0.025873 0.00015239 NaN 0.79363 144 54 4 NaN NaN NaN NaN 0 NaN NaN 0 60967000 14150 10196 9079 9085 0.18630598118841135 ILILWEHHC 9 Unmodified _ILILWEHHC_ 0 0 0 Tigger3a_dup3279|chrX:154076559-154076895:-|1.4196291476966034|0.012231502858754|6.86|151.0|23|2|anti-sense Tigger3a_dup3279|chrX:154076559-154076895:-|1.4196291476966034|0.012231502858754|6.86|151.0|23|2|anti-sense Tigger3a_dup3279|chrX:154076559-154076895:-|1.4196291476966034|0.012231502858754|6.86|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_2 3 582.3040771484375 2 582.305144 1162.59573 NaN NaN NaN NaN NaN NaN NaN 93.183 1 96.651 96.151 97.151 3.4687 0 0 0 0.40038 1 23005 23005 0.6015 0 1 14151 33358 9080 9086 17326 17326 0.02094082216467541 ILIPTFNYM 9 Unmodified _ILIPTFNYM_ 0 0 0 MER66B_dup326|chr4:79976321-79976804:+|1.4599685894014998|0.4406081362712856|1.73|151.0|31|2|anti-sense MER66B_dup326|chr4:79976321-79976804:+|1.4599685894014998|0.4406081362712856|1.73|151.0|31|2|anti-sense MER66B_dup326|chr4:79976321-79976804:+|1.4599685894014998|0.4406081362712856|1.73|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.296875 2 556.296453 1110.57835 NaN NaN NaN NaN NaN NaN NaN 82.59 1 86.129 85.629 86.629 3.5386 0 0 0 0.39598 1 20637 20637 1.6526 0 1 14152 16188 9081 9087 17327 17327 0.02748741890763995 ILIRPCLY 8 Unmodified _ILIRPCLY_ 0 0 0 REV__L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|40|2|anti-sense REV__L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_1 2 495.7959289550781 2 495.793881 989.573209 NaN NaN NaN NaN NaN NaN NaN 75.551 1 78.954 78.454 79.454 3.4034 0 0 0 0.40604 1 18655 18655 2.5775 0 1 + 14153 28683 9082 9088 17328 17328 0.0780048281882273 ILISIIKACP 10 Unmodified _ILISIIKACP_ 0 0 0 REV__L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|176|3|sense REV__L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|176|3|sense MSMS UPN48_class_I_Rep_3 7 535.8369750976562 2 535.835746 1069.65694 NaN NaN NaN NaN NaN NaN NaN 109.11 1 112.79 112.29 113.29 3.6751 0 0 0 0.53105 1 25896 25896 0.45834 0 1 + 14154 29665 9083 9089 17329 17329 0.12489594195881182 ILITQKNAA 9 Unmodified _ILITQKNAA_ 0 0 0 REV__nc|ENSG00000148516|P37275-3|ZEB1 REV__nc|ENSG00000148516|P37275-3|ZEB1 MSMS UPN47_class_I_Rep_1 2 486.29779052734375 2 486.297842 970.581131 NaN NaN NaN NaN NaN NaN NaN 50.733 1 54.362 53.862 54.862 3.6285 0 0 0 0.22485 1 11150 11150 14.838 1.7958 1 + 14155 19593 9084 9090 17330 17330 0.09466333339935318 ILIVEMFHLP 10 Unmodified _ILIVEMFHLP_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|167|1|anti-sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|167|1|anti-sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|167|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 404.56683349609375 3 404.566744 1210.6784 0.14762 5.9723E-05 0.12012 4.8598E-05 0.26775 0.00010832 404.5667993045227 60.846 1.2272 64.325 63.792 65.02 3.4785 297 109 4 0 0 0 0.54477 1 13408 13408 6.1918 0 1 3854800 14156 15426 9085 9091 17331 17331 0.08148979224597497 ILKASTSSLA 10 Unmodified _ILKASTSSLA_ 0 0 0 MER4A_dup35|chr1:167677383-167678021:-|2.0386661988640853|0.0075234810702331|8.08|151.0|8|1|sense MER4A_dup35|chr1:167677383-167678021:-|2.0386661988640853|0.0075234810702331|8.08|151.0|8|1|sense MER4A_dup35|chr1:167677383-167678021:-|2.0386661988640853|0.0075234810702331|8.08|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.7958984375 2 495.795132 989.575711 0.22609 0.00011209 1.6167 0.00080153 1.8427 0.00091362 495.7959750702081 72.517 0.34967 75.744 75.663 76.013 3.2271 42 26 2 0 0 0 0.56309 1 17870 17870 1.6526 0 1 1523100 14157 16015 9086 9092 17332 17332 0.08050609757469829 ILKAVIPKVKP 11 Unmodified _ILKAVIPKVKP_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MSMS UPN46_class_I_Rep_3 1 603.419677734375 2 603.420834 1204.82712 NaN NaN NaN NaN NaN NaN NaN 108.47 1 108.47 107.97 108.97 0 0 0 0 0.38417 1 26530 26530 0.30703 0 1 + 14158 18003 9087 9093 17333 17333 0.23289453189772757 ILKCVSSKKFV 11 Unmodified _ILKCVSSKKFV_ 0 0 0 LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|31|3|sense LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|31|3|sense LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3809814453125 2 626.378309 1250.74206 0.63456 0.00039748 2.2732 0.0014239 2.9078 0.0018214 626.3797362040128 107.45 0.17379 110.99 110.9 111.08 3.5345 40 22 2 0 0 0 0.64031 1 26006 26006 4.897 0 1 4027200 14159 15658 9088 9094 17334 17334 0.1267233966166259 ILKEPKIFVF 10 Unmodified _ILKEPKIFVF_ 0 0 0 HERVK11-int_dup109|chr8:12532071-12533073:-|2.278332900804963|0.2241530643709488|3.35|151.0|31|3|sense HERVK11-int_dup109|chr8:12532071-12533073:-|2.278332900804963|0.2241530643709488|3.35|151.0|31|3|sense HERVK11-int_dup109|chr8:12532071-12533073:-|2.278332900804963|0.2241530643709488|3.35|151.0|31|3|sense MSMS UPN48_class_I_Rep_1 5 617.383544921875 2 617.383917 1232.75328 NaN NaN NaN NaN NaN NaN NaN 89.024 1 92.647 92.147 93.147 3.6229 0 0 0 0.53105 1 21365 21365 1.4819 0 1 14160 8260 9089 9095 17335 17335 0.1462148502744185 ILKEPKIFVF 10 Unmodified _ILKEPKIFVF_ 0 0 0 HERVK11-int_dup109|chr8:12532071-12533073:-|2.278332900804963|0.2241530643709488|3.35|151.0|31|3|sense HERVK11-int_dup109|chr8:12532071-12533073:-|2.278332900804963|0.2241530643709488|3.35|151.0|31|3|sense HERVK11-int_dup109|chr8:12532071-12533073:-|2.278332900804963|0.2241530643709488|3.35|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 617.2965087890625 2 617.383917 1232.75328 NaN NaN NaN NaN NaN NaN NaN 53.81 1 57.391 56.891 57.891 3.5817 0 0 0 0.53105 1 11313 11313 1.4819 0 1 14161 8260 9089 9095 17336 17336 0.1462148502744185 ILKGVQTLL 9 Unmodified _ILKGVQTLL_ 0 0 0 MER1B_dup4502|chr15:49973118-49973350:-|1.3627677476930724|0.014565601287972|6.55|151.0|2|1|sense MER1B_dup4502|chr15:49973118-49973350:-|1.3627677476930724|0.014565601287972|6.55|151.0|2|1|sense MER1B_dup4502|chr15:49973118-49973350:-|1.3627677476930724|0.014565601287972|6.55|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 492.82623291015625 2 492.826235 983.637917 NaN NaN NaN NaN NaN NaN NaN 59.389 1 62.787 62.287 63.287 3.3982 0 0 0 0.37891 1 13787 13787 5.7319 0 1 14162 15817 9090 9096 17337 17337 0.14544380896461462 ILKIEYIHQE 10 Unmodified _ILKIEYIHQE_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MSMS UPN46_class_I_Rep_3 1 643.363525390625 2 643.36117 1284.70779 NaN NaN NaN NaN NaN NaN NaN 108.26 1 108.26 107.76 108.76 0 0 0 0 0.53105 1 26463 26463 2.9952 0.26005 1 14163 4065 9091 9097 17338 17338 0.07682214774399654 ILKKAELL 8 Unmodified _ILKKAELL_ 0 0 0 L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|33|2|sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|33|2|sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 464.31512451171875 2 464.315503 926.616454 -0.39323 -0.00018258 -0.13008 -6.0398E-05 -0.52331 -0.00024298 464.3153228060046 43.273 1.1874 46.515 46.15 47.338 3.2419 162 72 3 0 0 0 0.82752 2 8920 8920;8982 39.957 5.8549 1 400160 14164 11600 9092 9098 17339;17340 17339 0.15020995867757847 ILKKIHWKIRN 11 Unmodified _ILKKIHWKIRN_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 483.2664489746094 3 483.645267 1447.91397 0.19361 9.3637E-05 1.3019 0.00062964 1.4955 0.00072328 483.64571817077024 55.669 0.072525 55.669 55.623 55.696 0 12 8 2 0 0 0 22.551 1 12100 12100 0.50596 0.41111 1 254950 + 14165 30138 9093 9099 17341 17341 0.2079325246420467 ILKKIHWKIRN 11 Unmodified _ILKKIHWKIRN_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense MSMS UPN47_class_I_Rep_1 2 483.6468200683594 3 483.645267 1447.91397 NaN NaN NaN NaN NaN NaN NaN 49.281 1 52.941 52.441 53.441 3.6592 0 0 0 0.38417 1 10706 10706 0.50596 0.41111 1 + 14166 30138 9093 9099 17342 17342 0.2079325246420467 ILKKIHWKIRN 11 Unmodified _ILKKIHWKIRN_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.64691162109375 3 483.645267 1447.91397 0.28485 0.00013777 1.9288 0.00093284 2.2136 0.0010706 483.6461191816238 52.992 0.17619 56.318 56.264 56.44 3.3266 14 9 2 0 0 0 0.68081 1 11866 11866 0.45452 0.35968 1 68286 + 14167 30138 9093 9099 17343 17343 0.2079325246420467 ILKKIHWKIRN 11 Unmodified _ILKKIHWKIRN_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 483.645267 1447.91397 0.28485 0.00013777 1.9288 0.00093284 2.2136 0.0010706 483.6461191816238 52.992 0.17619 56.318 56.264 56.44 3.3266 -0.10139 -0.0007253 NaN 0.45452 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 68286 + 14168 30138 9093 9099 0.2079325246420467 ILKKIHWKIRN 11 Unmodified _ILKKIHWKIRN_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.645267 1447.91397 0.16213 7.8414E-05 2.4344 0.0011774 2.5965 0.0012558 483.6467386491233 53.426 0.058659 56.621 56.581 56.639 3.1948 0.20171 8.3352E-06 NaN 0.45452 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 47907 + 14169 30138 9093 9099 0.2079325246420467 ILKKIHWKIRN 11 Unmodified _ILKKIHWKIRN_ 0 0 0 REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense REV__L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|164|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 483.645267 1447.91397 0.091792 4.4395E-05 3.0568 0.0014784 3.1485 0.0015228 483.98120176870094 52.721 0.092934 56.319 56.261 56.354 3.5979 -0.10032 0.00091133 NaN 0.45452 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 50836 + 14170 30138 9093 9099 0.2079325246420467 ILKKIKFFKKI 11 Unmodified _ILKKIKFFKKI_ 0 0 0 REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 469.7919006347656 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 58.137 1 61.624 61.124 62.124 3.487 0 0 0 0.38417 1 12658 12658 0.08335 0.08335 1 + 14171 32737 9094 9100 17344 17344 0.27218263557665523 ILKKIKFFKKI 11 Unmodified _ILKKIKFFKKI_ 0 0 0 REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 469.3385009765625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 84.288 1 87.886 87.386 88.386 3.5973 0 0 0 0.38417 1 20179 20179 0.45452 0.35968 1 + 14172 32737 9094 9100 17345 17345 0.27218263557665523 ILKKIKFFKKI 11 Unmodified _ILKKIKFFKKI_ 0 0 0 REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 469.3384094238281 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 84.528 1 88.126 87.626 88.626 3.5973 0 0 0 0.38417 1 20235 20235 1.3296 0.87513 1 + 14173 32737 9094 9100 17346 17346 0.27218263557665523 ILKKIKFFKKI 11 Unmodified _ILKKIKFFKKI_ 0 0 0 REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 469.3385009765625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 84.671 1 88.268 87.768 88.768 3.5973 0 0 0 0.38417 1 20268 20268 0.45452 0.35968 1 + 14174 32737 9094 9100 17347 17347 0.27218263557665523 ILKLFFVE 8 Unmodified _ILKLFFVE_ 0 0 0 AluJr4_dup16067|chr15:68129075-68129367:-|1.332759835504018|0.0172847678377649|6.27|151.0|15|1|anti-sense REV__L1M6_dup969|chr3:18214214-18214939:+|1.6068969211686828|0.0001284221296633|13.61|146.0|24|3|sense REV__L1M6_dup969|chr3:18214214-18214939:+|1.6068969211686828|0.0001284221296633|13.61|146.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 504.8086853027344 2 504.810054 1007.60555 NaN NaN NaN NaN NaN NaN NaN 29.771 1 29.771 29.271 30.271 0 0 0 0 0.40625 1 4760 4760 2.3027 0 1 14175 195 9095 9101 17348 17348 0.10205593493469678 ILKLKILIHGL 11 Unmodified _ILKLKILIHGL_ 0 0 0 L1MD2_dup6193|chrX:51882990-51884540:+|1.3499501858307177|0.380605779961664|1.83|150.0|14|1|sense L1MD2_dup6193|chrX:51882990-51884540:+|1.3499501858307177|0.380605779961664|1.83|150.0|14|1|sense L1MD2_dup6193|chrX:51882990-51884540:+|1.3499501858307177|0.380605779961664|1.83|150.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 630.7847290039062 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 62.526 1 66 65.5 66.5 3.4738 0 0 0 0.38417 1 13981 13981 0.35063 0.35063 1 14176 12015 9096 9102 17349 17349 0.24977428598162987 ILKLKKIHH 9 Unmodified _ILKLKKIHH_ 0 0 0 L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|3|1|sense L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|3|1|sense L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 565.3838500976562 2 565.382043 1128.74953 NaN NaN NaN NaN NaN NaN NaN 108.91 1 108.91 108.41 109.41 0 0 0 0 0.40038 1 26675 26675 0.6015 0.076735 1 14177 13005 9097 9103 17350 17350 0.19030860044267683 ILKLRRYM 8 Unmodified _ILKLRRYM_ 0 0 0 REV__L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|67|3|sense REV__L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|67|3|sense MSMS UPN47_class_I_Rep_1 2 546.8410034179688 2 546.839154 1091.66375 NaN NaN NaN NaN NaN NaN NaN 92.702 1 96.422 95.922 96.922 3.7209 0 0 0 0.40746 1 23089 23089 0.69038 0 1 + 14178 29273 9098 9104 17351 17351 0.12158951867104406 ILKPRAKI 8 Unmodified _ILKPRAKI_ 0 0 0 REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9 REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9 MSMS UPN47_class_I_Rep_2 3 469.829833984375 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.87 1 98.342 97.842 98.842 3.472 0 0 0 0.39624 1 23368 23368 9.3474 0 1 + 14179 18993 9099 9105 17352 17352 0.17235524198792973 ILKPSTTLL 9 Unmodified _ILKPSTTLL_ 0 0 0 REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|37|3|anti-sense REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.31817626953125 2 493.318243 984.621933 0.21228 0.00010472 -0.048337 -2.3846E-05 0.16394 8.0877E-05 493.31816559283703 69.671 0.92643 73.126 72.785 73.711 3.4548 195 71 3 0 0 0 0.1249 1 16300 16300 29.082 2.8134 1 1246800 + 14180 28042 9100 9106 17353 17353 0.12900674659567812 ILKPSTTLL 9 Unmodified _ILKPSTTLL_ 0 0 0 REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|37|3|anti-sense REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.3183288574219 2 493.318243 984.621933 0.26966 0.00013303 0.0072945 3.5985E-06 0.27696 0.00013663 493.31816554953997 69.548 1.0931 73.069 72.684 73.777 3.5216 230 93 4 0 0 0 0.23293 1 16237 16237 18.146 4.2403 1 1458100 + 14181 28042 9100 9106 17354 17354 0.12900674659567812 ILKPSTTLL 9 Unmodified _ILKPSTTLL_ 0 0 0 REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|37|3|anti-sense REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.318359375 2 493.318243 984.621933 0.30684 0.00015137 -0.068695 -3.3889E-05 0.23815 0.00011748 493.3181397323839 69.531 1.1333 73.044 72.584 73.717 3.5128 208 89 4 0 0 0 0.17897 1 16134 16134 22.736 6.5872 1 1634300 + 14182 28042 9100 9106 17355 17355 0.12900674659567812 ILKQEQEEY 9 Unmodified _ILKQEQEEY_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;ENST00000463516.5_1_7:45009010-45014805:-|nuORF;ENST00000480503.5_1_7:45008844-45011824:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN46_class_I_Rep_3 1 590.8005981445312 2 590.298236 1178.58192 0.36901 0.00021783 -0.06396 -3.7755E-05 0.30505 0.00018007 590.2981416586307 33.736 0.50368 33.736 33.499 34.003 0 54 39 2 0 0 0 0.279 3 5923 5923;5928;5936 15.248 3.2371 1 90642 14183 2964 9101 9107 17356;17357;17358 17356 -0.00022916801663086517 ILKRRPCRIG 10 Unmodified _ILKRRPCRIG_ 0 0 0 REV__HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|46|1|sense REV__HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|46|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 404.8802185058594 3 404.588765 1210.74446 0.0082491 3.3375E-06 -0.19028 -7.6987E-05 -0.18204 -7.3649E-05 404.9232301842994 39.782 0.25861 43.438 43.272 43.531 3.6557 31 25 2 0 0 0 0.56444 1 7002 7002 0.69767 0 1 124160 + 14184 23634 9102 9108 17359 17359 0.14752232909995655 ILKVLLWLLAI 11 Unmodified _ILKVLLWLLAI_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117;ENST00000546387.1_1_12:44238454-44238748:+|nuORF ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN48_class_I_Rep_3 7 432.3005065917969 3 432.300215 1293.87882 NaN NaN NaN NaN NaN NaN NaN 108.38 1 112.06 111.56 112.56 3.6751 0 0 0 0.38417 1 25647 25647 0 0 1 14185 3129 9103 9109 17360 17360 0.24363196883723504 ILLDQSLDL 9 Unmodified _ILLDQSLDL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS UPN47_class_I_Rep_1 2 515.2948608398438 2 515.294965 1028.57538 0.29169 0.00015031 -0.19437 -0.00010016 0.097326 5.0152E-05 515.2948457643059 79.128 0.33494 82.574 82.309 82.644 3.4456 35 26 2 0 0 0 0.32682 1 19704 19704 12.241 2.8575 1 644350 14186 1409 9104 9110 17361 17361 0.06223190037621862 ILLDQSLDL 9 Unmodified _ILLDQSLDL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS UPN47_class_I_Rep_3 4 515.2948608398438 2 515.294965 1028.57538 0.30465 0.00015699 -0.12176 -6.2743E-05 0.18289 9.4243E-05 515.2948971272141 79.174 0.58411 82.469 82.229 82.813 3.295 87 50 2 0 0 0 0.066364 4 19762 19723;19762;19801;19838 41.956 8.6639 1 245580 14187 1409 9104 9110 17362;17363;17364;17365 17363 0.06223190037621862 ILLDQSLDL 9 Unmodified _ILLDQSLDL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MATCH UPN47_class_I_Rep_3 4 2 515.294965 1028.57538 0.30555 0.00015745 -0.40622 -0.00020932 -0.10067 -5.1876E-05 515.2948015407615 79.611 0.071198 82.906 82.861 82.932 3.295 0.16588 -0.00015818 NaN 12.241 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48825 14188 1409 9104 9110 0.06223190037621862 ILLEGTMNL 9 Oxidation (M) _ILLEGTM(Oxidation (M))NL_ ILLEGTM(1)NL ILLEGTM(76)NL 0 0 1 nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24 nc|ENSG00000008838|O75448-2|MED24 nc|ENSG00000008838|O75448-2|MED24 MULTI-MSMS UPN47_class_I_Rep_2 3 510.27569580078125 2 510.275718 1018.53688 0.13728 7.0051E-05 0.33137 0.00016909 0.46865 0.00023914 510.2756140783139 62.109 0.65391 65.368 65.09 65.744 3.2594 94 44 3 0 0 0 0.0061372 2 14622 14622;14667 75.761 35.804 1 217400 14189 742 9105 9111 17366;17367 17366 6 0.028355611314623275 ILLEGTMNL 9 Oxidation (M) _ILLEGTM(Oxidation (M))NL_ ILLEGTM(1)NL ILLEGTM(93)NL 0 0 1 nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24 nc|ENSG00000008838|O75448-2|MED24 nc|ENSG00000008838|O75448-2|MED24 MULTI-MSMS UPN47_class_I_Rep_3 4 510.2756042480469 2 510.275718 1018.53688 0.22064 0.00011259 0.21676 0.00011061 0.4374 0.00022319 510.2756324787373 62.21 0.84136 65.377 64.979 65.82 3.1667 93 56 2 0 0 0 0.0051925 2 14728 14686;14728 92.653 40.385 1 173030 14190 742 9105 9111 17368;17369 17369 6 0.028355611314623275 ILLGDTLKI 9 Unmodified _ILLGDTLKI_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|74|1|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|74|1|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|74|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.3182678222656 2 493.318243 984.621933 0.21228 0.00010472 -0.048337 -2.3846E-05 0.16394 8.0877E-05 493.31816559283703 69.671 0.92643 73.126 72.785 73.711 3.4548 195 71 3 0 0 0 0.045397 1 16177 16177 50.855 10.898 1 1246800 14191 11431 9106 9112 17370 17370 0.12900674659567812 ILLGDTLKI 9 Unmodified _ILLGDTLKI_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|74|1|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|74|1|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|74|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.3183288574219 2 493.318243 984.621933 0.30684 0.00015137 -0.068695 -3.3889E-05 0.23815 0.00011748 493.3181397323839 69.531 1.1333 73.044 72.584 73.717 3.5128 208 89 4 0 0 0 0.066041 1 16057 16057 42.095 2.1372 1 1634300 14192 11431 9106 9112 17371 17371 0.12900674659567812 ILLHTLSWLLL 11 Unmodified _ILLHTLSWLLL_ 0 0 0 REV__ENST00000498066.1_1_2:102484451-102486985:+|nuORF REV__ENST00000498066.1_1_2:102484451-102486985:+|nuORF MSMS UPN48_class_I_Rep_1 5 441.2804870605469 3 441.279591 1320.81694 NaN NaN NaN NaN NaN NaN NaN 65.458 1 68.91 68.41 69.41 3.4523 0 0 0 0.38417 1 14895 14895 1.3296 0.31607 1 + 14193 22673 9107 9113 17372 17372 0.16936845464579164 ILLIICWLWT 10 Unmodified _ILLIICWLWT_ 0 0 0 REV__L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|50|1|anti-sense REV__L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|50|1|anti-sense MSMS UPN46_class_I_Rep_3 1 637.3746948242188 2 637.372495 1272.73044 NaN NaN NaN NaN NaN NaN NaN 56.449 1 56.449 55.949 56.949 0 0 0 0 0.53105 1 12313 12313 1.6526 0 1 + 14194 25847 9108 9114 17373 17373 0.10498142638334684 ILLKQAVD 8 Unmodified _ILLKQAVD_ 0 0 0 CFAP54|p.D1979Vfs*4|1|0.07|ENSG00000188596|chr12:96685159-96685160|-/T|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF CFAP54|p.D1979Vfs*4|1|0.07|ENSG00000188596|chr12:96685159-96685160|-/T|frameshift_variant CFAP54|p.D1979Vfs*4|1|0.07|ENSG00000188596|chr12:96685159-96685160|-/T|frameshift_variant MSMS UPN47_class_I_Rep_2 3 450.28125 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 60.016 1 63.289 62.789 63.789 3.2731 0 0 0 0.39624 1 14013 14013 9.3474 0.75416 1 14195 428 9109 9115 17374 17374 0.09543545936946884 ILLLDAVSV 9 Unmodified _ILLLDAVSV_ 0 0 0 L1MC5_dup8588|chrX:56766015-56766200:-|1.1010899232093654|0.0069322409677305|7.31|151.0|10|2|anti-sense L1MC5_dup8588|chrX:56766015-56766200:-|1.1010899232093654|0.0069322409677305|7.31|151.0|10|2|anti-sense L1MC5_dup8588|chrX:56766015-56766200:-|1.1010899232093654|0.0069322409677305|7.31|151.0|10|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.79595947265625 2 471.797143 941.579734 0.051057 2.4089E-05 -1.0169 -0.00047976 -0.96582 -0.00045567 471.7956599741969 50.297 0.59335 53.523 53.317 53.91 3.2262 62 32 3 0 0 0 0.3898 1 11088 11088 8.5933 0.68312 1 275060 14196 11702 9110 9116 17375 17375 0.10660699251195638 ILLLFGRIFVK 11 Unmodified _ILLLFGRIFVK_ 0 0 0 L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|110|1|anti-sense L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|110|1|anti-sense L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|110|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 440.7992858886719 3 440.291831 1317.85366 0.0029739 1.3094E-06 1.2178 0.00053619 1.2208 0.0005375 440.2923620104804 55.423 0.28889 58.902 58.78 59.069 3.4785 19 17 2 0 0 0 22.551 1 12590 12590 0.50596 0.50596 1 69017 14197 13097 9111 9117 17376 17376 0.20745142081091217 ILLLIKFLLWY 11 Unmodified _ILLLIKFLLWY_ 0 0 0 REV__L1MD3_dup4277|chr15:99693184-99693849:+|2.372975685911892|0.4327807909974502|2.45|151.0|46|3|anti-sense REV__L1MD3_dup4277|chr15:99693184-99693849:+|2.372975685911892|0.4327807909974502|2.45|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_3 7 478.9747619628906 3 478.97562 1433.90503 NaN NaN NaN NaN NaN NaN NaN 45.793 1 49.43 48.93 49.93 3.6369 0 0 0 0.38417 1 8809 8809 0.094841 0 1 + 14198 27482 9112 9118 17377 17377 0.2054346605518731 ILLLILRVV 9 Unmodified _ILLLILRVV_ 0 0 0 L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|242|2|anti-sense L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|242|2|anti-sense L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|242|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.38232421875 2 526.38372 1050.75289 NaN NaN NaN NaN NaN NaN NaN 96.149 1 96.149 95.649 96.649 0 0 0 0 0.39326 1 23370 23370 2.3027 1.7012 1 14199 15444 9113 9119 17378 17378 0.22954110098248748 ILLLILRVV 9 Unmodified _ILLLILRVV_ 0 0 0 L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|242|2|anti-sense L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|242|2|anti-sense L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|242|2|anti-sense MSMS UPN47_class_I_Rep_1 2 526.3831176757812 2 526.38372 1050.75289 NaN NaN NaN NaN NaN NaN NaN 93.595 1 97.331 96.831 97.831 3.736 0 0 0 0.40038 1 23276 23276 0.6015 0 1 14200 15444 9113 9119 17379 17379 0.22954110098248748 ILLLKIWKT 9 Unmodified _ILLLKIWKT_ 0 0 0 ENST00000436575.5_1_7:6485721-6523688:-|nuORF;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2;ENSG00000136240|ENST00000258739|KDELR2 ENST00000436575.5_1_7:6485721-6523688:-|nuORF ENST00000436575.5_1_7:6485721-6523688:-|nuORF MSMS UPN48_class_I_Rep_2 6 564.3794555664062 2 564.381177 1126.7478 NaN NaN NaN NaN NaN NaN NaN 109.87 1 113.54 113.04 114.04 3.6715 0 0 0 0.39518 1 26158 26158 1.8442 0 1 14201 2958 9114 9120 17380 17380 0.18949806235627875 ILLLKIWKT 9 Unmodified _ILLLKIWKT_ 0 0 0 ENST00000436575.5_1_7:6485721-6523688:-|nuORF;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2;ENSG00000136240|ENST00000258739|KDELR2 ENST00000436575.5_1_7:6485721-6523688:-|nuORF ENST00000436575.5_1_7:6485721-6523688:-|nuORF MSMS UPN48_class_I_Rep_3 7 564.3798217773438 2 564.381177 1126.7478 NaN NaN NaN NaN NaN NaN NaN 109.64 1 113.31 112.81 113.81 3.67 0 0 0 0.39518 1 26045 26045 1.8442 0 1 14202 2958 9114 9120 17381 17381 0.18949806235627875 ILLLKIWKT 9 Unmodified _ILLLKIWKT_ 0 0 0 ENST00000436575.5_1_7:6485721-6523688:-|nuORF;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2;ENSG00000136240|ENST00000258739|KDELR2 ENST00000436575.5_1_7:6485721-6523688:-|nuORF ENST00000436575.5_1_7:6485721-6523688:-|nuORF MSMS UPN48_class_I_Rep_3 7 564.3790893554688 2 564.381177 1126.7478 NaN NaN NaN NaN NaN NaN NaN 109.78 1 113.45 112.95 113.95 3.67 0 0 0 0.39518 1 26076 26076 1.8442 0 1 14203 2958 9114 9120 17382 17382 0.18949806235627875 ILLLLCPLWKP 11 Unmodified _ILLLLCPLWKP_ 0 0 0 ENST00000339594.8_1_7:72891866-72891929:-|nuORF ENST00000339594.8_1_7:72891866-72891929:-|nuORF ENST00000339594.8_1_7:72891866-72891929:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 436.60797119140625 3 436.941922 1307.80394 0.1852 8.0923E-05 -0.18857 -8.2396E-05 -0.0033694 -1.4722E-06 436.9420697101506 59.796 0.23401 63.282 63.18 63.414 3.4868 27 18 2 0 0 0 22.551 1 13141 13141 1.4551 1.0469 1 120750 14204 6225 9115 9121 17383 17383 0.1623469108080826 ILLLNMLI 8 Unmodified _ILLLNMLI_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2;nc|ENSG00000196689|Q8NER1-3|TRPV1;ENSG00000196689|ENST00000572705|TRPV1;ENST00000574085.5_1_17:3470111-3495610:-|nuORF ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MSMS UPN48_class_I_Rep_1 5 471.80865478515625 2 471.806457 941.598361 NaN NaN NaN NaN NaN NaN NaN 40.826 1 44.332 43.832 44.832 3.506 0 0 0 0.4032 1 7369 7369 6.3541 0 1 14205 5201 9116 9122 17384 17384 0.12522537621407537 ILLLYIYER 9 Unmodified _ILLLYIYER_ 0 0 0 REV__L1ME3_dup117|chr1:35836709-35837077:-|2.477595904368797|0.2411542655703978|3.36|151.0|22|2|anti-sense REV__L1ME3_dup117|chr1:35836709-35837077:-|2.477595904368797|0.2411542655703978|3.36|151.0|22|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 598.3580322265625 2 598.357899 1194.70125 0.50181 0.00030026 -0.38151 -0.00022828 0.1203 7.198E-05 598.357474492074 52.848 0.65401 56.043 55.816 56.47 3.1948 71 45 2 0 0 0 0.48846 1 11874 11874 1.8442 0 1 152480 + 14206 27940 9117 9123 17385 17385 0.11168321613695298 ILLPMAIQL 9 Unmodified _ILLPMAIQL_ 0 0 0 L1MD2_dup7207|chr10:48351978-48353649:+|3.071527030732481|0.075751939380031|5.34|151.0|93|2|anti-sense L1MD2_dup7207|chr10:48351978-48353649:+|3.071527030732481|0.075751939380031|5.34|151.0|93|2|anti-sense L1MD2_dup7207|chr10:48351978-48353649:+|3.071527030732481|0.075751939380031|5.34|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_1 5 506.319091796875 2 506.317189 1010.61982 NaN NaN NaN NaN NaN NaN NaN 62.053 1 65.521 65.021 66.021 3.4678 0 0 0 0.081393 1 13858 13858 28.487 1.6032 1 14207 12028 9118 9124 17386 17386 0.11493922650117838 ILLQVARYL 9 Unmodified _ILLQVARYL_ 0 0 0 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 MSMS UPN47_class_I_Rep_3 4 544.8457641601562 2 544.844959 1087.67537 NaN NaN NaN NaN NaN NaN NaN 66.179 1 69.365 68.865 69.865 3.1853 0 0 0 0.096434 1 15944 15944 25.399 0 1 + 14208 20946 9119 9125 17387 17387 0.1350347216209684 ILLVIKVEWW 10 Unmodified _ILLVIKVEWW_ 0 0 0 REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF MSMS UPN46_class_I_Rep_3 1 649.8986206054688 2 649.897192 1297.77983 NaN NaN NaN NaN NaN NaN NaN 98.519 1 98.519 98.019 99.019 0 0 0 0 0.53105 1 23985 23985 0.40072 0 1 + 14209 22721 9120 9126 17388 17388 0.14285173918801775 ILLVLYHYS 9 Unmodified _ILLVLYHYS_ 0 0 0 L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|103|1|anti-sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|103|1|anti-sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|103|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.8222045898438 2 560.823692 1119.63283 -0.3478 -0.00019505 -0.53315 -0.000299 -0.88095 -0.00049406 560.8232932836396 19.336 0.88772 22.688 22.258 23.145 3.3514 167 89 2 0 0 0 0.48643 1 1892 1892 2.0598 2.0598 1 91818 14210 12265 9121 9127 17389 17389 0.07780077033839916 ILLWFFPP 8 Unmodified _ILLWFFPP_ 0 0 0 L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|93|3|anti-sense L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|93|3|anti-sense L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|93|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.7976684570312 2 516.799489 1031.58443 NaN NaN NaN NaN NaN NaN NaN 111.1 1 114.63 114.13 115.13 3.529 0 0 0 0.40581 1 27262 27262 2.8892 0.31174 1 14211 10356 9122 9128 17390 17390 0.06989628184601315 ILLYVFTT 8 Unmodified _ILLYVFTT_ 0 0 0 L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|45|2|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|45|2|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2593994140625 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 62.002 1 65.512 65.012 66.012 3.5104 0 0 0 0.40604 1 13748 13748 2.5775 1.0956 1 14212 10655 9123 9129 17391 17391 0.07273314222470617 ILMGRKFLH 9 Unmodified _ILMGRKFLH_ 0 0 0 Charlie4a_dup458|chr2:177226377-177226508:-|1.5292390788239651|0.1033275970962883|3.89|151.0|2|2|sense Charlie4a_dup458|chr2:177226377-177226508:-|1.5292390788239651|0.1033275970962883|3.89|151.0|2|2|sense Charlie4a_dup458|chr2:177226377-177226508:-|1.5292390788239651|0.1033275970962883|3.89|151.0|2|2|sense MSMS UPN47_class_I_Rep_3 4 557.8318481445312 2 557.831329 1113.6481 NaN NaN NaN NaN NaN NaN NaN 92.156 1 95.559 95.059 96.059 3.4034 0 0 0 0.39326 1 23018 23018 2.3027 0 1 14213 524 9124 9130 17392 17392 0.0958266535005805 ILMGRKFLH 9 Unmodified _ILMGRKFLH_ 0 0 0 Charlie4a_dup458|chr2:177226377-177226508:-|1.5292390788239651|0.1033275970962883|3.89|151.0|2|2|sense Charlie4a_dup458|chr2:177226377-177226508:-|1.5292390788239651|0.1033275970962883|3.89|151.0|2|2|sense Charlie4a_dup458|chr2:177226377-177226508:-|1.5292390788239651|0.1033275970962883|3.89|151.0|2|2|sense MSMS UPN48_class_I_Rep_2 6 557.830078125 2 557.831329 1113.6481 NaN NaN NaN NaN NaN NaN NaN 91.742 1 95.505 95.005 96.005 3.7629 0 0 0 0.39326 1 21845 21845 2.3027 0 1 14214 524 9124 9130 17393 17393 0.0958266535005805 ILMGVLKEV 9 Oxidation (M) _ILM(Oxidation (M))GVLKEV_ ILM(1)GVLKEV ILM(56)GVLKEV 0 0 1 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS UPN47_class_I_Rep_2 3 509.3040771484375 2 509.304278 1016.594 0.21685 0.00011044 0.33674 0.0001715 0.55359 0.00028195 509.3044794454561 54.36 1.0103 57.679 57.053 58.063 3.3187 95 56 2 0 0 0 0.033731 1 12266 12266 55.503 20.571 1 330300 14215 1900 9125 9131 17394 17394 56 0.08637028407838443 ILMGVLKEV 9 Oxidation (M) _ILM(Oxidation (M))GVLKEV_ ILM(1)GVLKEV ILM(52)GVLKEV 0 0 1 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS UPN47_class_I_Rep_3 4 509.3045654296875 2 509.304278 1016.594 0.26832 0.00013666 -0.31054 -0.00015816 -0.042227 -2.1506E-05 509.30410812142406 54.48 1.0718 57.665 57.281 58.353 3.1856 115 66 2 0 0 0 0.043452 1 12396 12396 51.63 20.361 1 181090 14216 1900 9125 9131 17395 17395 56 0.08637028407838443 ILMHHFKV 8 Unmodified _ILMHHFKV_ 0 0 0 REV__L1ME1_dup20640|chr11:3975664-3976551:+|1.1886949103268745|0.0138767752290511|6.42|151.0|13|1|sense REV__L1ME1_dup20640|chr11:3975664-3976551:+|1.1886949103268745|0.0138767752290511|6.42|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 512.7916870117188 2 512.791672 1023.56879 NaN NaN NaN NaN NaN NaN NaN 13.591 1 13.591 13.091 14.091 0 0 0 0 0.40738 1 419 419 0.79363 0 1 + 14217 27663 9126 9132 17396 17396 0.0579501839591785 ILMLERRYAI 10 Unmodified _ILMLERRYAI_ 0 0 0 REV__L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|88|3|anti-sense REV__L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|88|3|anti-sense MSMS UPN48_class_I_Rep_3 7 639.3746948242188 2 639.373558 1276.73256 NaN NaN NaN NaN NaN NaN NaN 110.7 1 114.37 113.87 114.87 3.6654 0 0 0 0.53105 1 26267 26267 0.40072 0 1 + 14218 24498 9127 9133 17397 17397 0.10526571376180982 ILNLIVYFFK 10 Unmodified _ILNLIVYFFK_ 0 0 0 REV__L1MC5a_dup10301|chr10:893217-894903:+|2.957421797872852|0.0565692396109738|5.71|151.0|70|1|anti-sense REV__L1MC5a_dup10301|chr10:893217-894903:+|2.957421797872852|0.0565692396109738|5.71|151.0|70|1|anti-sense MSMS UPN46_class_I_Rep_3 1 635.3849487304688 2 635.383917 1268.75328 NaN NaN NaN NaN NaN NaN NaN 83.176 1 83.176 82.676 83.676 0 0 0 0 0.53105 1 19742 19742 0.40072 0 1 + 14219 27105 9128 9134 17398 17398 0.12965485027439172 ILNLRRQHG 9 Unmodified _ILNLRRQHG_ 0 0 0 REV__HAL1_dup1754|chr1:235188193-235189118:+|1.5126077149562502|0.0221683776748674|6.09|151.0|2|1|sense REV__HAL1_dup1754|chr1:235188193-235189118:+|1.5126077149562502|0.0221683776748674|6.09|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.8297729492188 2 553.830706 1105.64686 0.51525 0.00028536 -1.1339 -0.00062799 -0.61865 -0.00034263 553.8297959014656 82.256 0.38303 85.832 85.745 86.128 3.5753 60 46 2 0 0 0 0.48643 1 19617 19617 2.0598 2.0598 1 158050 + 14220 23379 9129 9135 17399 17399 0.09826167305504896 ILNPYNLFL 9 Unmodified _ILNPYNLFL_ 0 0 0 nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.G458Afs*4|1|0.05|ENSG00000117139|chr1:202755436-202755436|C/-|frameshift_variant nc|ENSG00000117139|Q9UGL1-2|KDM5B nc|ENSG00000117139|Q9UGL1-2|KDM5B MSMS UPN46_class_I_Rep_3 1 553.8157958984375 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 100.05 1 100.05 99.555 100.55 0 0 0 0 0.00053226 1 24387 24387 64.236 20.378 1 14221 2212 9130 9136 17400 17400 0.06859790516796238 ILNPYNLFL 9 Unmodified _ILNPYNLFL_ 0 0 0 nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.G458Afs*4|1|0.05|ENSG00000117139|chr1:202755436-202755436|C/-|frameshift_variant nc|ENSG00000117139|Q9UGL1-2|KDM5B nc|ENSG00000117139|Q9UGL1-2|KDM5B MSMS UPN46_class_I_Rep_3 1 553.8165893554688 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 100.22 1 100.22 99.716 100.72 0 0 0 0 0.2088 1 24426 24426 15.847 0 1 14222 2212 9130 9136 17401 17401 0.06859790516796238 ILNRNRSL 8 Unmodified _ILNRNRSL_ 0 0 0 REV__L1ME1_dup20145|chr10:103150058-103151181:-|4.599287396355214|0.0706060630167634|6.03|151.0|56|2|anti-sense REV__L1ME1_dup20145|chr10:103150058-103151181:-|4.599287396355214|0.0706060630167634|6.03|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.30548095703125 2 493.298707 984.582862 0.28744 0.00014179 1.2216 0.00060262 1.5091 0.00074442 493.2992907669335 50.817 0.66128 54.033 53.656 54.317 3.2163 54 34 2 0 0 0 0.82752 1 11191 11191 11.64 0.52583 1 92570 + 14223 27658 9131 9137 17402 17402 0.08995387148559075 ILNSFNGYV 9 Unmodified _ILNSFNGYV_ 0 0 0 L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|39|1|anti-sense L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|39|1|anti-sense L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|39|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.7669677734375 2 513.766374 1025.5182 0.16969 8.7181E-05 0.022841 1.1735E-05 0.19253 9.8916E-05 513.7662942105275 59.33 0.95332 62.603 62.282 63.236 3.2731 136 64 3 0 0 0 0.47197 1 13978 13978 3.5965 1.7523 1 238110 14224 13028 9132 9138 17403 17403 0.0064576755189591495 ILNSFNGYV 9 Unmodified _ILNSFNGYV_ 0 0 0 L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|39|1|anti-sense L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|39|1|anti-sense L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|39|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.7660522460938 2 513.766374 1025.5182 0.18748 9.6321E-05 0.1798 9.2374E-05 0.36728 0.0001887 513.7663550071871 59.56 0.8615 62.725 62.304 63.165 3.1651 144 60 3 0 0 0 0.44742 1 14011 14011 5.2969 1.7004 1 259850 14225 13028 9132 9138 17404 17404 0.0064576755189591495 ILNVAWTLINE 11 Unmodified _ILNVAWTLINE_ 0 0 0 REV__L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|39|3|sense REV__L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 643.3623657226562 2 643.36117 1284.70779 NaN NaN NaN NaN NaN NaN NaN 90.682 1 90.682 90.182 91.182 0 0 0 0 0.38417 1 21871 21871 2.7352 0 1 + 14226 26867 9133 9139 17405 17405 0.07682214774445129 ILPDKKFY 8 Unmodified _ILPDKKFY_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|3|1|sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 512.253662109375 2 512.29731 1022.58007 0.25827 0.00013231 -2.5204 -0.0012912 -2.2622 -0.0011589 512.798019712687 51.621 0.034084 51.621 51.609 51.643 0 5 3 2 0 0 0 0.72333 1 10992 10992 10.183 0.83596 1 58621 + 14227 24907 9134 9140 17406 17406 0.0696811897103089 ILPGSLFRF 9 Unmodified _ILPGSLFRF_ 0 0 0 ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7 ENSG00000136536|ENST00000409175|MARCHF7 ENSG00000136536|ENST00000409175|MARCHF7 MULTI-MSMS UPN48_class_I_Rep_1 5 525.3109741210938 2 525.310752 1048.60695 0.33108 0.00017392 1.8474 0.00097045 2.1785 0.0011444 525.3118792338436 75.072 0.48578 78.562 78.147 78.632 3.49 81 47 3 0 0 0 0.31407 1 17773 17773 13.042 1.4022 1 372900 14228 2976 9135 9141 17407 17407 0.08459227582216045 ILPGSLFRF 9 Unmodified _ILPGSLFRF_ 0 0 0 ENSG00000136536|ENST00000409175|MARCHF7;nc|ENSG00000136536|Q9H992-2|MARCHF7 ENSG00000136536|ENST00000409175|MARCHF7 ENSG00000136536|ENST00000409175|MARCHF7 MULTI-MSMS UPN48_class_I_Rep_3 7 525.3109741210938 2 525.310752 1048.60695 0.48959 0.00025719 0.040041 2.1034E-05 0.52963 0.00027822 525.310728176252 75.083 0.25547 78.649 78.509 78.765 3.5659 58 28 3 0 0 0 0.074399 1 17607 17607 39.95 13.066 1 675700 14229 2976 9135 9141 17408 17408 0.08459227582216045 ILPGSLTASL 10 Unmodified _ILPGSLTASL_ 0 0 0 nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 MULTI-MSMS UPN46_class_I_Rep_3 1 486.2921142578125 2 486.292225 970.569897 0.26782 0.00013024 -0.20077 -9.7635E-05 0.067044 3.2603E-05 486.29207672016173 80.417 0.15292 80.417 80.351 80.504 0 26 15 2 0 0 0 0.31342 1 18953 18953 29.082 1.4528 1 859340 14230 4187 9136 9142 17409 17409 0.08343511245789159 ILPGSLTASL 10 Unmodified _ILPGSLTASL_ 0 0 0 nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 MULTI-MSMS UPN47_class_I_Rep_1 2 486.2918701171875 2 486.292225 970.569897 0.14919 7.2551E-05 -0.20108 -9.7785E-05 -0.051889 -2.5233E-05 486.29199466254585 75.853 0.6693 79.256 79.19 79.859 3.4034 81 61 3 0 0 0 0.4965 1 18876 18876 12.241 1.4411 1 210520 14231 4187 9136 9142 17410 17410 0.08343511245789159 ILPGSLTASL 10 Unmodified _ILPGSLTASL_ 0 0 0 nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 nc|ENSG00000165566|Q8N7J2-2|AMER2 MSMS UPN47_class_I_Rep_3 4 486.292724609375 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 76.385 1 79.642 79.142 80.142 3.2573 0 0 0 0.53105 1 18988 18988 12.241 0 1 14232 4187 9136 9142 17411 17411 0.08343511245789159 ILPGVVTSP 9 Unmodified _ILPGVVTSP_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MSMS UPN48_class_I_Rep_1 5 441.7680969238281 2 441.768386 881.522219 -0.026516 -1.1714E-05 -0.10111 -4.4666E-05 -0.12762 -5.638E-05 441.7681934738912 96.591 0.94635 100.2 99.774 100.72 3.6124 232 113 3 0 0 0 0.45688 1 23290 23290 4.756 0 1 2513200 14233 4810 9137 9143 17412 17412 0.07671857045602337 ILPGVVTSP 9 Unmodified _ILPGVVTSP_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MSMS UPN48_class_I_Rep_2 6 441.7682189941406 2 441.768386 881.522219 0.12681 5.6021E-05 -0.22993 -0.00010158 -0.10312 -4.5554E-05 441.7681310057335 96.391 0.88155 100.17 99.809 100.69 3.7804 275 115 3 0 0 0 0.45688 1 22979 22979 4.756 0 1 2481000 14234 4810 9137 9143 17413 17413 0.07671857045602337 ILPGVVTSP 9 Unmodified _ILPGVVTSP_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MSMS UPN48_class_I_Rep_3 7 441.7680969238281 2 441.768386 881.522219 0.1498 6.6177E-05 -0.32169 -0.00014211 -0.17189 -7.5938E-05 441.76810661522427 96.417 0.84752 100.32 99.933 100.78 3.9084 284 116 3 0 0 0 0.45688 2 22810 22810;22898 4.756 0 1 2537100 14235 4810 9137 9143 17414;17415 17414 0.07671857045602337 ILPGVVTSP 9 Unmodified _ILPGVVTSP_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 441.768386 881.522219 0.16306 7.2034E-05 -0.33781 -0.00014923 -0.17475 -7.7201E-05 441.7680969990076 96.714 0.97639 100.49 100.1 101.08 3.7767 -0.037449 -2.0152E-06 NaN 4.756 282 133 3 NaN NaN NaN NaN 0 NaN NaN 0 3200600 14236 4810 9137 9143 0.07671857045602337 ILPIKGWC 8 Unmodified _ILPIKGWC_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|83|1|anti-sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|83|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 465.2703552246094 2 465.267499 928.520445 0.19382 9.0178E-05 3.5632 0.0016578 3.757 0.001748 465.27031620244236 99.623 0.31702 103.38 103.28 103.59 3.7575 124 39 4 0 0 0 0.82752 1 23677 23677 2.5775 0.51773 1 1162900 + 14237 29559 9138 9144 17416 17416 0.05332524755999657 ILPLLYKLYIR 11 Unmodified _ILPLLYKLYIR_ 0 0 0 L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|9|2|sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|9|2|sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 468.9712829589844 3 468.970758 1403.89044 NaN NaN NaN NaN NaN NaN NaN 48.687 1 52.405 51.905 52.905 3.7175 0 0 0 0.38417 1 9755 9755 0.094841 0 1 14238 11745 9139 9145 17417 17417 0.20465393907011276 ILPMLWWAW 9 Unmodified _ILPMLWWAW_ 0 0 0 REV__AluJb_dup119242|chr20:3986281-3986555:-|1.5853455765865188|0.0055801434431948|8.15|151.0|9|3|sense REV__AluJb_dup119242|chr20:3986281-3986555:-|1.5853455765865188|0.0055801434431948|8.15|151.0|9|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 405.8837585449219 3 405.884296 1214.63106 -0.045149 -1.8325E-05 -0.0010337 -4.1958E-07 -0.046183 -1.8745E-05 405.88419889470464 65.415 1.498 68.869 68.278 69.776 3.4541 181 108 3 0 0 0 0.50328 1 15157 15157 0.26902 0.26902 1 268920 + 14239 16923 9140 9146 17418 17418 0.03232744744241245 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_1 5 506.3154602050781 2 506.315503 1010.61645 0.21719 0.00010997 -0.20074 -0.00010164 0.016454 8.331E-06 506.31538881888537 90.331 0.33819 93.957 93.65 93.988 3.626 77 43 3 0 0 0 0.051515 3 21713 21654;21684;21713 48.346 14.243 1 273730 14240 1792 9141 9147 17419;17420;17421 17421 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_1 5 506.31561279296875 2 506.315503 1010.61645 0.21688 0.00010981 -0.11496 -5.8206E-05 0.10192 5.1604E-05 506.3153520790562 90.513 0.2169 94.139 93.981 94.198 3.626 78 29 3 0 0 0 0.013968 1 21742 21742 67.344 16.489 1 348230 14241 1792 9141 9147 17422 17422 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_1 5 506.3155212402344 2 506.315503 1010.61645 0.21651 0.00010962 -0.079314 -4.0158E-05 0.1372 6.9466E-05 506.31536874176334 90.664 0.32503 94.29 94.183 94.508 3.626 100 43 3 0 0 0 0.029391 2 21772 21772;21800 57.471 15.377 1 401800 14242 1792 9141 9147 17423;17424 17423 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_2 6 506.315673828125 2 506.315503 1010.61645 0.30821 0.00015605 0.049605 2.5116E-05 0.35782 0.00018117 506.31540206653835 89.848 0.39156 93.595 93.252 93.644 3.7471 103 49 3 0 0 0 0.013968 2 21404 21373;21404 67.344 16.489 1 381630 14243 1792 9141 9147 17425;17426 17426 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_2 6 506.315673828125 2 506.315503 1010.61645 0.30789 0.00015589 0.14754 7.47E-05 0.45543 0.00023059 506.3155022543903 89.972 0.11663 93.719 93.644 93.761 3.7471 42 16 3 0 0 0 0.051515 1 21436 21436 48.346 14.243 1 366390 14244 1792 9141 9147 17427 17427 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_2 6 506.3155212402344 2 506.315503 1010.61645 0.30804 0.00015597 -0.10185 -5.157E-05 0.20619 0.0001044 506.3153692448421 90.078 0.46777 93.825 93.754 94.222 3.7471 112 65 3 0 0 0 0.029391 2 21464 21464;21493 57.471 15.377 1 557210 14245 1792 9141 9147 17428;17429 17428 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_3 7 506.3155822753906 2 506.315503 1010.61645 0.28495 0.00014428 0.075966 3.8463E-05 0.36092 0.00018274 506.31540116568345 89.862 0.40749 93.695 93.408 93.815 3.8322 125 54 3 0 0 0 0.029391 3 21336 21307;21336;21364 57.471 15.377 1 313290 14246 1792 9141 9147 17430;17431;17432 17431 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN48_class_I_Rep_3 7 506.3153076171875 2 506.315503 1010.61645 0.2842 0.00014389 -0.12805 -6.4836E-05 0.15614 7.9057E-05 506.3153461450325 90.121 0.3526 93.968 93.815 94.168 3.847 96 50 3 0 0 0 0.029391 2 21418 21390;21418 57.471 15.377 1 295710 14247 1792 9141 9147 17433;17434 17434 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MATCH UPN48_class_I_Rep_3 7 2 506.315503 1010.61645 0.28326 0.00014342 -0.3401 -0.0001722 -0.056838 -2.8778E-05 506.31537851503225 90.376 0.12696 94.223 94.168 94.295 3.847 -0.033532 -0.0002402 NaN 57.471 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 105800 14248 1792 9141 9147 0.1115699586774781 ILPQWPKFPL 10 Unmodified _ILPQWPKFPL_ 0 0 0 REV__L1MC1_dup8508|chr10:26571685-26572118:-|1.2829762125554969|0.0182266407362261|6.14|151.0|34|3|anti-sense REV__L1MC1_dup8508|chr10:26571685-26572118:-|1.2829762125554969|0.0182266407362261|6.14|151.0|34|3|anti-sense MSMS UPN46_class_I_Rep_3 1 619.869384765625 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 89.668 1 89.668 89.168 90.168 0 0 0 0 0.53105 1 21582 21582 1.4819 0 1 + 14249 26604 9142 9148 17435 17435 0.11296331713219843 ILPVRFQEH 9 Unmodified _ILPVRFQEH_ 0 0 0 nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 nc|ENSG00000070371|P53675-2|CLTCL1 nc|ENSG00000070371|P53675-2|CLTCL1 MSMS UPN48_class_I_Rep_3 7 569.8212890625 2 569.822015 1137.62948 NaN NaN NaN NaN NaN NaN NaN 35.516 1 39.188 38.688 39.688 3.6721 0 0 0 0.39518 1 5768 5768 1.8442 0 1 14250 1072 9143 9149 17436 17436 0.06616826979848156 ILQCLFEFF 9 Unmodified _ILQCLFEFF_ 0 0 0 REV__ENSG00000078237|ENST00000179259|TIGAR REV__ENSG00000078237|ENST00000179259|TIGAR MSMS UPN47_class_I_Rep_3 4 580.2957153320312 2 580.296453 1158.57835 NaN NaN NaN NaN NaN NaN NaN 25.871 1 29.219 28.719 29.719 3.3478 0 0 0 0.39428 1 3702 3702 2.0598 0 1 + 14251 17884 9144 9150 17437 17437 0.005407418907680039 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4 MULTI-MSMS UPN46_class_I_Rep_3 1 407.2311096191406 3 407.2313 1218.67207 0.043989 1.7914E-05 -0.028883 -1.1762E-05 0.015106 6.1516E-06 407.23124572481146 43.329 0.82798 43.329 43.006 43.834 0 108 82 2 0 0 0 0.31677 2 8638 8638;8671 12.873 0.63195 1 452110 14252 2570;1202 9145 9151 17438;17439 17438 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4 MULTI-MSMS UPN47_class_I_Rep_1 2 407.2309265136719 3 407.2313 1218.67207 -0.44275 -0.0001803 -0.1254 -5.1066E-05 -0.56815 -0.00023137 407.23109275991146 37.744 1.5121 41.409 40.782 42.294 3.6652 271 115 3 0 0 0 0.27121 1 7152 7152 15.739 5.9744 1 579400 14253 2570;1202 9145 9151 17440 17440 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 407.2313 1218.67207 0.043989 1.7914E-05 -0.028883 -1.1762E-05 0.015106 6.1516E-06 407.23124572481146 43.329 0.82798 43.329 43.006 43.834 0 0.19823 8.5345E-06 NaN 12.873 108 82 2 NaN NaN NaN NaN 0 NaN NaN 0 452110 14254 2570;1202 9145 9151 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2 ENSG00000127616|ENST00000344626|SMARCA4 MULTI-MATCH UPN47_class_I_Rep_3 4 3 407.2313 1218.67207 -1.1551 -0.00047039 -0.14368 -5.8513E-05 -1.2988 -0.0005289 407.2313172668413 39.695 0.12169 42.933 42.899 43.021 3.238 -0.19823 -0.00013172 NaN 12.873 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 46001 14255 2570;1202 9145 9151 0.07148177317412774 ILQGYNNQNN 10 Unmodified _ILQGYNNQNN_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|53|1|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|53|1|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|53|1|sense MSMS UPN47_class_I_Rep_1 2 589.2811889648438 2 589.283451 1176.55235 NaN NaN NaN NaN NaN NaN NaN 37.867 1 41.532 41.032 42.032 3.6652 0 0 0 0.53105 1 7235 7235 1.4819 0.68827 1 14256 14725 9146 9152 17441 17441 -0.028864360271199985 ILQIYTLFI 9 Unmodified _ILQIYTLFI_ 0 0 0 REV__L1ME2_dup5762|chr7:102088658-102090076:-|3.493384176117206|0.0174356710191445|7.65|151.0|50|1|anti-sense REV__L1ME2_dup5762|chr7:102088658-102090076:-|3.493384176117206|0.0174356710191445|7.65|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.3197631835938 2 562.341718 1122.66888 0.48332 0.00027179 0.73223 0.00041176 1.2156 0.00068355 562.8433382687674 72.636 0.11089 76.109 76.034 76.145 3.4732 13 8 2 0 0 0 0.46434 1 17060 17060 4.3292 0 1 63360 + 14257 27862 9147 9153 17442 17442 0.11245534210706865 ILQNPASLY 9 Unmodified _ILQNPASLY_ 0 0 0 L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|94|2|sense L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|94|2|sense L1PB1_dup6537|chr8:73680297-73684907:+|3.067839660600329|0.0958662643120259|5.0|151.0|94|2|sense MSMS UPN46_class_I_Rep_3 1 509.79339599609375 2 509.782025 1017.5495 NaN NaN NaN NaN NaN NaN NaN 42.946 1 42.946 42.446 43.446 0 0 0 0 0.2088 1 8539 8539 15.847 1.2655 1 14258 15175 9148 9154 17443 17443 0.04142340585997317 ILQQIYFT 8 Unmodified _ILQQIYFT_ 0 0 0 REV__MER113_dup25|chr1:19469235-19469470:+|1.004095772139062|0.0253255995523783|5.31|151.0|2|1|sense REV__MER113_dup25|chr1:19469235-19469470:+|1.004095772139062|0.0253255995523783|5.31|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.2714233398438 2 513.286943 1024.55933 0.23751 0.00012191 -0.010549 -5.4146E-06 0.22696 0.0001165 513.2869257034386 49.654 0.52487 53.179 52.96 53.485 3.5246 41 32 2 0 0 0 0.82752 1 10022 10022 8.5933 0 1 83711 + 14259 31076 9149 9155 17444 17444 0.04803528591378381 ILQRNQGAA 9 Unmodified _ILQRNQGAA_ 0 0 0 HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|76|2|sense HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|76|2|sense HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|76|2|sense MSMS UPN46_class_I_Rep_3 1 485.7732849121094 2 485.775065 969.535577 NaN NaN NaN NaN NaN NaN NaN 80.496 1 80.496 79.996 80.996 0 0 0 0 0.38299 1 18965 18965 4.756 0.42677 1 14260 7990 9150 9156 17445 17445 0.04959107877562019 ILQTLNVYL 9 Unmodified _ILQTLNVYL_ 0 0 0 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 MULTI-MSMS UPN47_class_I_Rep_3 4 538.8220825195312 2 538.82115 1075.62775 0.44645 0.00024056 0.13295 7.1636E-05 0.5794 0.00031219 538.8212495513649 79.029 0.54173 82.324 81.99 82.531 3.295 88 50 2 0 0 0 0.21414 1 19674 19674 19.362 3.2128 1 154340 14261 4629 9151 9157 17446 17446 0.0929577317122039 ILRELILTFYF 11 Unmodified _ILRELILTFYF_ 0 0 0 ENST00000562299.1_1_16:55612978-55617007:+|nuORF ENST00000562299.1_1_16:55612978-55617007:+|nuORF ENST00000562299.1_1_16:55612978-55617007:+|nuORF MSMS UPN46_class_I_Rep_3 1 476.6533203125 3 476.614751 1426.82242 NaN NaN NaN NaN NaN NaN NaN 82.558 1 82.558 82.058 83.058 0 0 0 0 0.38417 1 19562 19562 0.50596 0 1 14262 7467 9152 9158 17447 17447 0.12608524256370401 ILREQTQV 8 Unmodified _ILREQTQV_ 0 0 0 REV__LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|17|3|sense REV__LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.7851257324219 2 493.785099 985.555644 0.27152 0.00013407 0.025355 1.252E-05 0.29688 0.00014659 493.7850004417244 50.341 0.51527 53.567 53.348 53.863 3.2262 41 27 2 0 0 0 0.82752 1 11185 11185 18.135 1.1927 1 93542 + 14263 30939 9153 9159 17448 17448 0.06228858817519267 ILRIQDNYMT 10 Unmodified _ILRIQDNYMT_ 0 0 0 REV__L1MA4_dup897|chr2:70027291-70027973:+|1.2362783991135111|0.0822907403212294|3.91|151.0|32|2|anti-sense REV__L1MA4_dup897|chr2:70027291-70027973:+|1.2362783991135111|0.0822907403212294|3.91|151.0|32|2|anti-sense MSMS UPN47_class_I_Rep_2 3 633.8290405273438 2 633.82918 1265.64381 NaN NaN NaN NaN NaN NaN NaN 46.648 1 50 49.5 50.5 3.3515 0 0 0 0.53105 1 9943 9943 1.4819 0 1 + 14264 25222 9154 9160 17449 17449 0.02161111345799327 ILRLLAEEA 9 Unmodified _ILRLLAEEA_ 0 0 0 ENST00000327214.5_1_12:27091474-27091543:+|nuORF ENST00000327214.5_1_12:27091474-27091543:+|nuORF ENST00000327214.5_1_12:27091474-27091543:+|nuORF MSMS UPN47_class_I_Rep_1 2 514.311279296875 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 63.746 1 67.101 66.601 67.601 3.3557 0 0 0 0.38916 1 15102 15102 3.2813 1.2216 1 14265 6174 9155 9161 17450 17450 0.09510602511409161 ILRRYRFHIP 10 Unmodified _ILRRYRFHIP_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|6|1|sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 457.61053466796875 3 457.610446 1369.80951 0.20519 9.3899E-05 0.40629 0.00018592 0.61149 0.00027982 457.6106549966323 101.21 0.061317 101.21 101.19 101.25 0 7 5 2 0 0 0 0.5652 1 24696 24696 0.15932 0 1 59752 + 14266 32696 9156 9162 17451 17451 0.13939550707505077 ILRRYRFHIP 10 Unmodified _ILRRYRFHIP_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|6|1|sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 457.610446 1369.80951 0.032399 1.4826E-05 0.82214 0.00037622 0.85453 0.00039104 457.6108507757339 97.232 0.1915 100.84 100.75 100.94 3.6088 -0.29649 0.00018575 NaN 0.15932 39 23 2 NaN NaN NaN NaN 0 NaN NaN 0 158070 + 14267 32696 9156 9162 0.13939550707505077 ILRRYRFHIP 10 Unmodified _ILRRYRFHIP_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|6|1|sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 457.610446 1369.80951 0.17929 8.2047E-05 0.0053163 2.4328E-06 0.18461 8.448E-05 457.6104032234817 97.449 0.071526 101.36 101.33 101.4 3.9084 0.22078 -0.0009356 NaN 0.15932 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 65415 + 14268 32696 9156 9162 0.13939550707505077 ILRVKHRITLW 11 Unmodified _ILRVKHRITLW_ 0 0 0 L1MB3_dup9682|chrX:149483632-149484324:-|1.334742549993065|0.3480307758192515|1.94|151.0|2|1|sense L1MB3_dup9682|chrX:149483632-149484324:-|1.334742549993065|0.3480307758192515|1.94|151.0|2|1|sense L1MB3_dup9682|chrX:149483632-149484324:-|1.334742549993065|0.3480307758192515|1.94|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.9749450683594 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 54.393 1 57.975 57.475 58.475 3.5817 0 0 0 0.38417 1 11493 11493 0.40827 0 1 14269 10473 9157 9163 17452 17452 0.19872965947160992 ILRWWRTT 8 Unmodified _ILRWWRTT_ 0 0 0 Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|77|1|anti-sense Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|77|1|anti-sense Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|77|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 566.2748413085938 2 566.324725 1130.6349 0.44773 0.00025356 -1.1281 -0.00063885 -0.68034 -0.00038529 567.3270594411514 53.795 0.49177 57.31 57.107 57.598 3.5143 59 34 3 0 0 0 0.72333 1 11335 11335 9.3474 9.3474 1 152780 14270 33284 9158 9164 17453 17453 0.07480550562308963 ILSEFSSKL 9 Unmodified _ILSEFSSKL_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS UPN47_class_I_Rep_3 4 512.2908935546875 2 512.289682 1022.56481 0.32137 0.00016463 3.3952 0.0017393 3.7165 0.0019039 512.2896294540047 53.061 0.58555 56.255 56.078 56.664 3.1948 59 29 3 0 0 0 0.14216 1 11959 11959 26.268 3.5319 1 185960 14271 1596 9159 9165 17454 17454 0.05443207383189019 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN46_class_I_Rep_3 1 493.7806701660156 2 493.779482 985.544411 0.22124 0.00010924 -0.61261 -0.00030249 -0.39137 -0.00019325 493.7791284750016 55.692 0.4958 55.692 55.509 56.005 0 113 58 2 0 0 0 0.10568 3 12150 12088;12114;12150 32.786 1.5173 1 6377600 14272 3325 9160 9166 17455;17456;17457 17457 0.05106036723384477 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.77978515625 2 493.779482 985.544411 0.042509 2.099E-05 0.26722 0.00013195 0.30973 0.00015294 493.77963268500133 51.135 0.75735 54.728 54.477 55.235 3.5932 53 37 2 0 0 0 0.081756 2 11288 11246;11288 38.176 1.6694 1 156070 14273 3325 9160 9166 17458;17459 17459 0.05106036723384477 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 493.77923583984375 2 493.779482 985.544411 0.33029 0.00016309 -0.21355 -0.00010545 0.11674 5.7645E-05 493.7793805521376 51.356 0.73753 54.694 54.438 55.175 3.3386 56 36 2 0 0 0 0.069349 1 11383 11383 31.268 1.4278 1 158790 14274 3325 9160 9166 17460 17460 0.05106036723384477 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN47_class_I_Rep_3 4 493.78070068359375 2 493.779482 985.544411 0.30648 0.00015133 0.082229 4.0603E-05 0.38871 0.00019194 493.77954066747543 51.509 0.65476 54.726 54.453 55.107 3.2163 57 34 2 0 0 0 0.12096 3 11453 11437;11453;11487 29.841 1.3461 1 135780 14275 3325 9160 9166 17461;17462;17463 17462 0.05106036723384477 ILSGKQLFLIH 11 Unmodified _ILSGKQLFLIH_ 0 0 0 Charlie1a_dup3082|chr9:70319169-70320176:-|1.1027674500542837|0.3028917814985337|1.86|150.0|26|2|sense Charlie1a_dup3082|chr9:70319169-70320176:-|1.1027674500542837|0.3028917814985337|1.86|150.0|26|2|sense Charlie1a_dup3082|chr9:70319169-70320176:-|1.1027674500542837|0.3028917814985337|1.86|150.0|26|2|sense MSMS UPN48_class_I_Rep_2 6 423.59783935546875 3 423.595691 1267.76524 NaN NaN NaN NaN NaN NaN NaN 98.437 1 102.21 101.71 102.71 3.7707 0 0 0 0.35398 1 23386 23386 4.4062 0 1 14276 470 9161 9167 17464 17464 0.14207101770648478 ILSGKREKG 9 Unmodified _ILSGKREKG_ 0 0 0 MLT1J_dup11530|chr13:73008965-73009381:-|1.077240996875504|0.0251432754983563|5.42|149.0|31|3|anti-sense MLT1J_dup11530|chr13:73008965-73009381:-|1.077240996875504|0.0251432754983563|5.42|149.0|31|3|anti-sense MLT1J_dup11530|chr13:73008965-73009381:-|1.077240996875504|0.0251432754983563|5.42|149.0|31|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 494.30108642578125 2 494.300916 986.587279 0.27388 0.00013538 0.20046 9.9087E-05 0.47434 0.00023446 494.3010680945897 88.004 1.1303 91.732 91.413 92.543 3.7279 530 144 5 0 0 0 0.43153 1 21085 21085 6.2058 1.8765 1 13562000 14277 16454 9162 9168 17465 17465 0.09344851571472645 ILSGNQLGR 9 Unmodified _ILSGNQLGR_ 0 0 0 ENSG00000173621|ENST00000309602|LRFN4 ENSG00000173621|ENST00000309602|LRFN4 ENSG00000173621|ENST00000309602|LRFN4 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2771301269531 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.40174 1 18679 18679 7.9102 0 1 595600 14278 4640 9163 9169 17466 17466 0.06031992020314192 ILSGNQLGR 9 Unmodified _ILSGNQLGR_ 0 0 0 ENSG00000173621|ENST00000309602|LRFN4 ENSG00000173621|ENST00000309602|LRFN4 ENSG00000173621|ENST00000309602|LRFN4 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 479.277441 956.540328 0.24321 0.00011657 -0.094801 -4.5436E-05 0.14841 7.1129E-05 479.27729385878115 78.546 0.99577 78.546 78.108 79.104 0 -0.13356 1.9391E-05 NaN 7.9102 211 106 3 NaN NaN NaN NaN 0 NaN NaN 0 772180 14279 4640 9163 9169 0.06031992020314192 ILSGNQLGR 9 Unmodified _ILSGNQLGR_ 0 0 0 ENSG00000173621|ENST00000309602|LRFN4 ENSG00000173621|ENST00000309602|LRFN4 ENSG00000173621|ENST00000309602|LRFN4 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 479.277441 956.540328 0.22577 0.00010821 0.0038615 1.8507E-06 0.22963 0.00011006 479.2773538969423 75.109 0.28175 78.699 78.656 78.938 3.59 0.019437 0.00011396 NaN 7.9102 80 31 3 NaN NaN NaN NaN 0 NaN NaN 0 341290 14280 4640 9163 9169 0.06031992020314192 ILSLHRRA 8 Unmodified _ILSLHRRA_ 0 0 0 L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|229|2|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|229|2|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|229|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 483.3039245605469 2 483.303793 964.593033 0.12742 6.1581E-05 0.084712 4.0942E-05 0.21213 0.00010252 483.3037114975652 107.79 0.35803 111.42 111.31 111.67 3.6313 85 31 5 0 0 0 0.82752 1 25993 25993 13.508 0 1 92029000 14281 9822 9164 9170 17467 17467 0.10931994873794793 ILSLKFPR 8 Unmodified _ILSLKFPR_ 0 0 0 REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|61|1|anti-sense REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|61|1|anti-sense MSMS UPN48_class_I_Rep_1 5 487.31341552734375 2 487.313295 972.612037 NaN NaN NaN NaN NaN NaN NaN 56.409 1 59.91 59.41 60.41 3.5014 0 0 0 0.33644 1 12134 12134 25.399 0 1 + 14282 31710 9165 9171 17468 17468 0.12463531444836917 ILSLKFPR 8 Unmodified _ILSLKFPR_ 0 0 0 REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|61|1|anti-sense REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|61|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 487.2496337890625 2 487.313295 972.612037 0.36825 0.00017945 -0.34764 -0.00016941 0.020616 1.0046E-05 487.3130087948834 56.462 0.13276 59.995 59.902 60.035 3.5333 15 11 2 0 0 0 0.72333 1 12136 12136 27.629 3.6082 1 91009 + 14283 31710 9165 9171 17469 17469 0.12463531444836917 ILSLKFPR 8 Unmodified _ILSLKFPR_ 0 0 0 REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|61|1|anti-sense REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|61|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.3135986328125 2 487.313295 972.612037 NaN NaN NaN NaN NaN NaN NaN 56.14 1 59.695 59.195 60.195 3.5554 0 0 0 0.25009 1 11964 11964 41.84 0 1 + 14284 31710 9165 9171 17470 17470 0.12463531444836917 ILSLTWWH 8 Unmodified _ILSLTWWH_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|119|3|anti-sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|119|3|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2863159179688 2 528.287277 1054.56 NaN NaN NaN NaN NaN NaN NaN 23.303 1 26.946 26.446 27.446 3.6432 0 0 0 0.40738 1 2519 2519 0.79363 0.19213 1 + 14285 25248 9166 9172 17471 17471 0.034903680310890195 ILSPLYDLR 9 Unmodified _ILSPLYDLR_ 0 0 0 L1ME1_dup23348|chr12:132096395-132098062:-|2.001999473140472|0.1744464078570614|3.52|151.0|69|1|anti-sense L1ME1_dup23348|chr12:132096395-132098062:-|2.001999473140472|0.1744464078570614|3.52|151.0|69|1|anti-sense L1ME1_dup23348|chr12:132096395-132098062:-|2.001999473140472|0.1744464078570614|3.52|151.0|69|1|anti-sense MSMS UPN46_class_I_Rep_3 1 544.9166259765625 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 97.862 1 97.862 97.362 98.362 0 0 0 0 0.39518 1 23823 23823 1.8442 0 1 14286 12314 9167 9173 17472 17472 0.08222889028456848 ILSQRLGR 8 Unmodified _ILSQRLGR_ 0 0 0 L1MEc_dup12106|chr10:92000956-92001830:+|1.9266543031919137|0.1022838436976488|4.24|151.0|48|2|anti-sense L1MEc_dup12106|chr10:92000956-92001830:+|1.9266543031919137|0.1022838436976488|4.24|151.0|48|2|anti-sense L1MEc_dup12106|chr10:92000956-92001830:+|1.9266543031919137|0.1022838436976488|4.24|151.0|48|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.7956237792969 2 471.795801 941.577048 0.08139 3.84E-05 2.5295 0.0011934 2.6108 0.0012318 471.79553982273404 50.135 0.87384 53.479 53.147 54.021 3.3431 80 45 3 0 0 0 0.82752 1 10985 10985 11.64 1.4569 1 204920 14287 13011 9168 9174 17473 17473 0.10392288636899139 ILSRCSMYLGH 11 Unmodified _ILSRCSMYLGH_ 0 0 0 REV__ENST00000421745.6_1_2:32702563-32702647:+|nuORF REV__ENST00000421745.6_1_2:32702563-32702647:+|nuORF MSMS UPN47_class_I_Rep_3 4 640.3186645507812 2 640.317925 1278.6213 NaN NaN NaN NaN NaN NaN NaN 76.162 1 79.419 78.919 79.919 3.2573 0 0 0 0.38417 1 18926 18926 2.9952 0 1 + 14288 22244 9169 9175 17474 17474 -0.006868113234531847 ILSYTIDSNL 10 Unmodified _ILSYTIDSNL_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MSMS UPN48_class_I_Rep_2 6 569.3202514648438 2 569.803154 1137.59175 NaN NaN NaN NaN NaN NaN NaN 40.291 1 44.032 43.532 44.532 3.7413 0 0 0 0.53105 1 7240 7240 3.5965 0 1 + 14289 17969 9170 9176 17475 17475 0.028462712037480742 ILSYYCFCYS 10 Unmodified _ILSYYCFCYS_ 0 0 0 REV__L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|44|1|anti-sense REV__L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_3 4 631.264892578125 2 631.267035 1260.51952 NaN NaN NaN NaN NaN NaN NaN 28.298 1 31.632 31.132 32.132 3.3337 0 0 0 0.53105 1 4419 4419 1.4819 0 1 + 14290 28906 9171 9177 17476 17476 -0.10032102465879689 ILTCISEEMA 10 Unmodified _ILTCISEEMA_ 0 0 0 ENST00000487621.5_1_7:80476611-80548165:-|nuORF ENST00000487621.5_1_7:80476611-80548165:-|nuORF ENST00000487621.5_1_7:80476611-80548165:-|nuORF MSMS UPN46_class_I_Rep_3 1 555.2637329101562 2 555.264493 1108.51443 NaN NaN NaN NaN NaN NaN NaN 66.834 1 66.834 66.334 67.334 0 0 0 0 0.53105 1 15184 15184 20.454 0 1 14291 7044 9172 9178 17477 17477 -0.03548406328468445 ILTCISEEMA 10 Unmodified _ILTCISEEMA_ 0 0 0 ENST00000487621.5_1_7:80476611-80548165:-|nuORF ENST00000487621.5_1_7:80476611-80548165:-|nuORF ENST00000487621.5_1_7:80476611-80548165:-|nuORF MSMS UPN47_class_I_Rep_3 4 555.2623291015625 2 555.264493 1108.51443 NaN NaN NaN NaN NaN NaN NaN 63.154 1 66.324 65.824 66.824 3.1698 0 0 0 0.53105 1 15023 15023 6.2058 0 1 14292 7044 9172 9178 17478 17478 -0.03548406328468445 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN46_class_I_Rep_3 1 480.2925720214844 2 480.292225 958.569897 0.1905 9.1497E-05 -0.18443 -8.8581E-05 0.0060726 2.9166E-06 480.29206392244976 54.501 0.46958 54.501 54.301 54.77 0 73 52 2 0 0 0 0.079935 1 11767 11767 38.615 15.878 1 374780 14293 4320 9173 9179 17479 17479 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN47_class_I_Rep_1 2 480.2921447753906 2 480.292225 958.569897 -0.045363 -2.1787E-05 -0.032985 -1.5843E-05 -0.078348 -3.763E-05 480.2920114968843 49.03 0.49517 52.689 52.487 52.982 3.6592 58 36 2 0 0 0 0.23293 1 10634 10634 18.146 3.3081 1 104810 14294 4320 9173 9179 17480 17480 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-SECPEP UPN47_class_I_Rep_3 4 480.8153381347656 2 480.292225 958.569897 0.10037 4.8209E-05 -0.53853 -0.00025865 -0.43816 -0.00021044 480.29176106351173 49.47 0.47368 52.705 52.509 52.983 3.2345 39 26 2 0 0 0 0.091581 1 10891 10891 22.736 2.2827 1 99874 14295 4320 9173 9179 17481 17481 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.292225 958.569897 0.14039 6.7428E-05 -0.20415 -9.8051E-05 -0.063758 -3.0623E-05 480.29194332993717 49.447 0.51181 52.794 52.532 53.044 3.3465 0.064517 3.7551E-05 NaN 22.736 50 33 2 NaN NaN NaN NaN 0 NaN NaN 0 83770 14296 4320 9173 9179 0.0889551124580521 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS UPN46_class_I_Rep_3 1 485.81231689453125 2 485.812793 969.611034 0.2824 0.0001372 -0.73618 -0.00035765 -0.45378 -0.00022045 485.8124016718462 87.516 0.20113 87.516 87.386 87.587 0 19 17 2 0 0 0 0.18929 1 20990 20990 21.747 0 1 261770 14297 2063 9174 9180 17482 17482 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_2 3 485.8119201660156 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 82.626 1 86.025 85.525 86.525 3.3984 0 0 0 0.11494 1 20596 20596 21.747 0 1 14298 2063 9174 9180 17483 17483 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_2 3 485.8120422363281 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 82.756 1 86.155 85.655 86.655 3.3984 0 0 0 0.28335 1 20629 20629 11.64 0 1 14299 2063 9174 9180 17484 17484 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS UPN47_class_I_Rep_3 4 485.8125305175781 2 485.812793 969.611034 0.17975 8.7326E-05 -0.76846 -0.00037333 -0.5887 -0.000286 485.8121837373897 83.198 0.33837 86.548 86.418 86.757 3.35 62 38 2 0 0 0 0.18929 2 20846 20846;20881 21.747 0 1 145890 14300 2063 9174 9180 17485;17486 17485 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.81219482421875 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 82.896 1 86.233 85.733 86.733 3.337 0 0 0 0.11494 1 20782 20782 21.747 0 1 14301 2063 9174 9180 17487 17487 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.8125305175781 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 83.389 1 86.739 86.239 87.239 3.35 0 0 0 0.11494 1 20915 20915 21.747 0 1 14302 2063 9174 9180 17488 17488 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 83.51 1 86.86 86.36 87.36 3.35 0 0 0 0.2088 1 20946 20946 15.847 0 1 14303 2063 9174 9180 17489 17489 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.8123779296875 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 83.635 1 86.985 86.485 87.485 3.35 0 0 0 0.11494 1 20981 20981 21.747 0 1 14304 2063 9174 9180 17490 17490 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.8132019042969 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 83.759 1 87.109 86.609 87.609 3.35 0 0 0 0.081393 1 21014 21014 28.487 0 1 14305 2063 9174 9180 17491 17491 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.81195068359375 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 83.832 1 87.182 86.682 87.682 3.35 0 0 0 0.11494 1 21032 21032 21.747 0 1 14306 2063 9174 9180 17492 17492 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.8128356933594 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 84.017 1 87.367 86.867 87.867 3.35 0 0 0 0.11494 1 21080 21080 21.747 0 1 14307 2063 9174 9180 17493 17493 0.12501272285282994 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS UPN47_class_I_Rep_3 4 485.81195068359375 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 84.207 1 87.568 87.068 88.068 3.3615 0 0 0 0.2088 1 21132 21132 15.847 0 1 14308 2063 9174 9180 17494 17494 0.12501272285282994 ILTESEIKL 9 Unmodified _ILTESEIKL_ 0 0 0 ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX ENST00000476913.1_1_1:231665086-231678380:+|nuORF ENST00000476913.1_1_1:231665086-231678380:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 523.3104858398438 2 523.310615 1044.60668 0.25083 0.00013126 -0.33346 -0.0001745 -0.082627 -4.324E-05 523.3103685361106 54.222 0.85491 57.724 57.357 58.212 3.5014 109 42 3 0 0 0 0.006828 4 12286 12153;12196;12241;12286 72.968 10.395 1 515780 14309 2203 9175 9181 17495;17496;17497;17498 17498 0.08615763071702531 ILTESEIKL 9 Unmodified _ILTESEIKL_ 0 0 0 ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX ENST00000476913.1_1_1:231665086-231678380:+|nuORF ENST00000476913.1_1_1:231665086-231678380:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 523.310546875 2 523.310615 1044.60668 0.10685 5.5917E-05 -0.20845 -0.00010908 -0.1016 -5.3168E-05 523.3103963504471 54.393 0.96547 57.712 57.374 58.34 3.3187 121 48 3 0 0 0 0.0070571 4 12288 12245;12288;12333;12376 86.332 19.875 1 666580 14310 2203 9175 9181 17499;17500;17501;17502 17500 0.08615763071702531 ILTESEIKL 9 Unmodified _ILTESEIKL_ 0 0 0 ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX ENST00000476913.1_1_1:231665086-231678380:+|nuORF ENST00000476913.1_1_1:231665086-231678380:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 523.3103637695312 2 523.310615 1044.60668 0.33822 0.00017699 -0.43929 -0.00022989 -0.10107 -5.2893E-05 523.310270596422 54.668 1.1551 57.854 57.414 58.569 3.1856 154 70 3 0 0 0 0.0060665 5 12424 12338;12382;12424;12470;12523 90.135 13.31 1 575300 14311 2203 9175 9181 17503;17504;17505;17506;17507 17505 0.08615763071702531 ILTGYRVSL 9 Unmodified _ILTGYRVSL_ 0 0 0 L1ME1_dup12606|chr6:156140923-156142042:-|7.698299315656277|0.0387518630656817|7.63|151.0|5|1|sense L1ME1_dup12606|chr6:156140923-156142042:-|7.698299315656277|0.0387518630656817|7.63|151.0|5|1|sense L1ME1_dup12606|chr6:156140923-156142042:-|7.698299315656277|0.0387518630656817|7.63|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.305419921875 2 511.305667 1020.59678 0.25054 0.0001281 0.37743 0.00019298 0.62798 0.00032109 511.30578747461016 62.07 1.2253 65.438 65.113 66.338 3.3681 168 85 3 0 0 0 0.15122 1 14536 14536 25.399 0 1 305060 14312 12199 9176 9182 17508 17508 0.08730619856999056 ILTLFLYFLPN 11 Unmodified _ILTLFLYFLPN_ 0 0 0 L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|121|1|anti-sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|121|1|anti-sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|121|1|anti-sense MSMS UPN48_class_I_Rep_2 6 451.93218994140625 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 92.324 1 96.087 95.587 96.587 3.7629 0 0 0 0.38417 1 21974 21974 2.6312 0.19645 1 14313 9598 9177 9183 17509 17509 0.1121345033632224 ILTLMMTWR 9 Unmodified _ILTLMMTWR_ 0 0 0 Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|41|3|sense Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|41|3|sense Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 584.2630615234375 2 582.81703 1163.61951 0.48509 0.00028272 -0.62859 -0.00036635 -0.1435 -8.3634E-05 582.8165581275153 68.746 0.68723 72.254 71.901 72.589 3.5083 54 23 3 0 0 0 0.49026 1 15848 15848 1.6526 0.45928 1 1079300 14314 33026 9178 9184 17510 17510 0.04424179658576577 ILTSTTLSRK 10 Unmodified _ILTSTTLSRK_ 0 0 0 L1M5_dup2407|chr1:155430334-155430676:-|1.2576172303621496|0.0095809319267738|7.04|150.0|13|3|sense L1M5_dup2407|chr1:155430334-155430676:-|1.2576172303621496|0.0095809319267738|7.04|150.0|13|3|sense L1M5_dup2407|chr1:155430334-155430676:-|1.2576172303621496|0.0095809319267738|7.04|150.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3408203125 2 560.340238 1118.66592 0.41936 0.00023499 -0.31799 -0.00017818 0.10137 5.6803E-05 560.3398906398756 107.31 0.18834 110.99 110.85 111.04 3.6813 17 13 3 0 0 0 0.54466 1 25280 25280 6.2058 1.8765 1 840650 14315 9120 9179 9185 17511 17511 0.11133659085908221 ILTTHTTL 8 Unmodified _ILTTHTTL_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENST00000559655.1_1_15:35141948-35142251:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 450.7649230957031 2 450.263468 898.512382 -0.55634 -0.0002505 -0.54224 -0.00024415 -1.0986 -0.00049465 450.2631020958072 36.726 0.9753 40.125 39.761 40.736 3.3988 141 73 3 0 0 0 0.82752 5 6843 6843;6881;6920;6957;6992 50.855 14.728 1 359460 14316 2425;4314;7292 9180 9186 17512;17513;17514;17515;17516 17512 0.05906669040234647 ILTTHTTL 8 Unmodified _ILTTHTTL_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENST00000559655.1_1_15:35141948-35142251:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_3 4 450.2627258300781 2 450.263468 898.512382 -0.76389 -0.00034395 -0.46199 -0.00020802 -1.2259 -0.00055197 450.26312382274784 36.826 0.92478 40.073 39.727 40.652 3.247 157 67 3 0 0 0 0.82752 6 6919 6919;6959;7001;7040;7083;7133 44.407 10.005 1 371190 14317 2425;4314;7292 9180 9186 17517;17518;17519;17520;17521;17522 17517 0.05906669040234647 ILTTHTTL 8 Unmodified _ILTTHTTL_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENST00000559655.1_1_15:35141948-35142251:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 450.263468 898.512382 -0.36154 -0.00016279 -0.81279 -0.00036597 -1.1743 -0.00052875 450.26299754041696 36.362 0.82866 40.031 39.724 40.553 3.6692 -0.04542 -0.00016301 NaN 50.855 144 65 3 NaN NaN NaN NaN 0 NaN NaN 0 324210 14318 2425;4314;7292 9180 9186 0.05906669040234647 ILTVSGELLF 10 Unmodified _ILTVSGELLF_ 0 0 0 ENSG00000101898|ENST00000394552|MCTS2 ENSG00000101898|ENST00000394552|MCTS2 ENSG00000101898|ENST00000394552|MCTS2 MULTI-MSMS UPN47_class_I_Rep_3 4 546.3221435546875 2 546.320983 1090.62741 0.45794 0.00025018 -0.10629 -5.8069E-05 0.35165 0.00019211 546.3208079975946 79.837 0.69147 83.146 82.805 83.497 3.309 117 76 2 0 0 0 0.46161 1 20047 20047 14.838 0 1 157220 14319 1592 9181 9187 17523 17523 0.08572353451381787 ILVDCKVVY 9 Unmodified _ILVDCKVVY_ 0 0 0 REV__L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|131|2|anti-sense REV__L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|131|2|anti-sense MSMS UPN48_class_I_Rep_2 6 526.2949829101562 2 526.296453 1050.57835 NaN NaN NaN NaN NaN NaN NaN 35.902 1 39.59 39.09 40.09 3.6877 0 0 0 0.39518 1 5979 5979 1.8442 0.36234 1 + 14320 25446 9182 9188 17524 17524 0.055087418907760366 ILVILEEEF 9 Unmodified _ILVILEEEF_ 0 0 0 REV__ENST00000433671.2_1_1:39325692-39325881:+|nuORF REV__ENST00000433671.2_1_1:39325692-39325881:+|nuORF MSMS UPN48_class_I_Rep_1 5 552.8130493164062 2 552.81299 1103.61143 NaN NaN NaN NaN NaN NaN NaN 17.452 1 20.978 20.478 21.478 3.5261 0 0 0 0.4007 1 1016 1016 0.52476 0 1 + 14321 22303 9183 9189 17525 17525 0.06376647214483455 ILVKEDIL 8 Unmodified _ILVKEDIL_ 0 0 0 REV__nc|ENSG00000156194|O14830-2|PPEF2 REV__nc|ENSG00000156194|O14830-2|PPEF2 MULTI-MSMS UPN47_class_I_Rep_3 4 472.30035400390625 2 471.797143 941.579734 0.051057 2.4089E-05 -1.0169 -0.00047976 -0.96582 -0.00045567 471.7956599741969 50.297 0.59335 53.523 53.317 53.91 3.2262 62 32 3 0 0 0 0.82752 1 11107 11107 11.64 0 1 275060 + 14322 19785 9184 9190 17526 17526 0.10660699251184269 ILVKEDIL 8 Unmodified _ILVKEDIL_ 0 0 0 REV__nc|ENSG00000156194|O14830-2|PPEF2 REV__nc|ENSG00000156194|O14830-2|PPEF2 MSMS UPN47_class_I_Rep_3 4 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 99.111 1 102.54 102.04 103.04 3.4328 0 0 0 0.40364 1 24521 24521 5.7604 0 1 + 14323 19785 9184 9190 17527 17527 0.10660699251184269 ILWWILFH 8 Unmodified _ILWWILFH_ 0 0 0 REV__L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|135|3|anti-sense REV__L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|135|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.3241577148438 2 564.323663 1126.63277 NaN NaN NaN NaN NaN NaN NaN 48.219 1 51.743 51.243 52.243 3.5239 0 0 0 0.40738 1 9614 9614 0.79363 0 1 + 14324 26664 9185 9191 17528 17528 0.07452121824530877 ILYCKVDVP 9 Unmodified _ILYCKVDVP_ 0 0 0 REV__L1M4_dup2301|chr2:127799902-127800270:+|1.211807634685187|0.0057343575611071|7.72|150.0|24|2|anti-sense REV__L1M4_dup2301|chr2:127799902-127800270:+|1.211807634685187|0.0057343575611071|7.72|150.0|24|2|anti-sense MSMS UPN48_class_I_Rep_2 6 525.288330078125 2 525.288628 1048.5627 NaN NaN NaN NaN NaN NaN NaN 33.221 1 36.873 36.373 37.373 3.6517 0 0 0 0.39428 1 5220 5220 2.0598 0 1 + 14325 24420 9186 9192 17529 17529 0.04036455373739045 ILYCNYCTN 9 Unmodified _ILYCNYCTN_ 0 0 0 REV__L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|100|1|anti-sense REV__L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|100|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.734375 2 553.735902 1105.45725 0.53458 0.00029602 -0.62571 -0.00034648 -0.091135 -5.0464E-05 553.7352635956616 73.695 0.13701 77.177 77.072 77.209 3.4812 28 15 2 0 0 0 0.3898 1 17376 17376 8.5933 2.2392 1 126010 + 14326 24534 9187 9193 17530 17530 -0.09125828814194392 ILYFIRAVFP 10 Unmodified _ILYFIRAVFP_ 0 0 0 L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|97|3|anti-sense L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|97|3|anti-sense L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|97|3|anti-sense MSMS UPN47_class_I_Rep_1 2 619.869873046875 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 85.162 1 88.753 88.253 89.253 3.5914 0 0 0 0.53105 1 21272 21272 1.4819 0.15237 1 14327 11643 9188 9194 17531 17531 0.11296331713219843 ILYGEVEKL 9 Unmodified _ILYGEVEKL_ 0 0 0 nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B nc|ENSG00000038274|Q9NZL9-3|MAT2B nc|ENSG00000038274|Q9NZL9-3|MAT2B MULTI-MSMS UPN46_class_I_Rep_3 1 532.3049926757812 2 532.305332 1062.59611 0.25464 0.00013554 -0.098725 -5.2552E-05 0.15591 8.2993E-05 532.3051517526055 58.025 0.29134 58.025 57.912 58.203 0 36 30 2 0 0 0 0.13244 1 12770 12770 27.629 8.1898 1 176060 14328 857 9189 9195 17532 17532 0.0673178041729443 ILYHFQITCH 10 Unmodified _ILYHFQITCH_ 0 0 0 REV__ENST00000265404.6_1_4:68472190-68472331:+|nuORF REV__ENST00000265404.6_1_4:68472190-68472331:+|nuORF MSMS UPN48_class_I_Rep_3 7 637.81884765625 2 637.821158 1273.62776 NaN NaN NaN NaN NaN NaN NaN 39.163 1 42.818 42.318 43.318 3.6557 0 0 0 0.53105 1 6815 6815 1.8442 0 1 + 14329 21591 9190 9196 17533 17533 0.0018944989958527003 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 554.3446655273438 2 554.344261 1106.67397 0.39642 0.00021976 -0.35509 -0.00019684 0.041337 2.2915E-05 554.3440881998719 79.42 0.48701 79.42 79.139 79.626 0 58 47 2 0 0 0 0.41734 1 18612 18612 18.135 0 1 173780 14330 7826 9191 9197 17534 17534 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3436889648438 2 554.344261 1106.67397 0.39629 0.00021968 -0.26074 -0.00014454 0.13555 7.514E-05 554.3438493089326 72.644 0.20763 76.024 75.928 76.136 3.3799 37 17 3 0 0 0 0.34369 1 17775 17775 24.674 2.9272 1 146340 14331 7826 9191 9197 17535 17535 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.343994140625 2 554.344261 1106.67397 0.39804 0.00022065 -0.2465 -0.00013665 0.15153 8.4002E-05 554.3439622578519 72.864 0.468 76.244 76.082 76.55 3.3799 48 30 2 0 0 0 0.34369 1 17898 17898 24.674 2.9272 1 121730 14332 7826 9191 9197 17536 17536 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.34423828125 2 554.344261 1106.67397 0.45012 0.00024952 -0.20031 -0.00011104 0.24981 0.00013848 554.3439888990407 72.642 0.5573 75.869 75.554 76.111 3.2271 89 47 3 0 0 0 0.34369 1 17885 17885 24.674 1.9376 1 172050 14333 7826 9191 9197 17537 17537 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.3440551757812 2 554.344261 1106.67397 NaN NaN NaN NaN NaN NaN NaN 73.251 1 76.479 75.979 76.979 3.2271 0 0 0 0.53105 1 18079 18079 24.674 2.9272 1 14334 7826 9191 9197 17538 17538 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 554.8482055664062 2 554.344261 1106.67397 0.45182 0.00025046 -0.15595 -8.6448E-05 0.29587 0.00016401 554.3437213474723 73.43 0.2479 76.666 76.522 76.77 3.2363 26 21 2 0 0 0 0.84575 1 18139 18139 18.135 0 1 70581 14335 7826 9191 9197 17539 17539 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.8468017578125 2 554.344261 1106.67397 0.53043 0.00029404 -0.1723 -9.5515E-05 0.35813 0.00019853 554.3440308517155 72.585 0.31762 76.059 75.787 76.105 3.4732 66 25 3 0 0 0 0.34369 1 16983 16983 24.674 2.9272 1 1285400 14336 7826 9191 9197 17540 17540 0.12489838073338433 ILYIFLGGVL 10 Unmodified _ILYIFLGGVL_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|82|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.3447265625 2 554.344261 1106.67397 0.44637 0.00024744 -0.11663 -6.4656E-05 0.32974 0.00018279 554.3440768569235 72.694 1.0128 76.231 75.665 76.678 3.5373 202 88 3 0 0 0 0.53188 1 16796 16796 7.9102 0 1 1712400 14337 7826 9191 9197 17541 17541 0.12489838073338433 ILYKAFHK 8 Unmodified _ILYKAFHK_ 0 0 0 REV__L1MB8_dup14227|chr17:1374335-1374809:-|1.6919984720094896|0.0457469163087371|5.21|151.0|34|3|anti-sense REV__L1MB8_dup14227|chr17:1374335-1374809:-|1.6919984720094896|0.0457469163087371|5.21|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_1 5 510.7851257324219 2 510.30547 1018.59639 NaN NaN NaN NaN NaN NaN NaN 78.32 1 81.842 81.342 82.342 3.5221 0 0 0 0.40746 1 18675 18675 0.69038 0 1 + 14338 26372 9192 9198 17542 17542 0.08783244927792566 ILYPKMVK 8 Unmodified _ILYPKMVK_ 0 0 0 MER44C_dup245|chr4:112421600-112422298:-|2.000386526299759|0.3073153510955072|2.7|151.0|11|2|sense MER44C_dup245|chr4:112421600-112422298:-|2.000386526299759|0.3073153510955072|2.7|151.0|11|2|sense MER44C_dup245|chr4:112421600-112422298:-|2.000386526299759|0.3073153510955072|2.7|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.3039855957031 2 496.304081 990.59361 0.24172 0.00011997 -0.22299 -0.00011067 0.018731 9.2964E-06 496.3037142241214 87.869 0.085083 91.525 91.468 91.553 3.6563 11 8 2 0 0 0 0.82752 1 21971 21971 0.69038 0 1 33390 14339 15983 9193 9199 17543 17543 0.09793653478629949 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN47_class_I_Rep_1 2 554.34423828125 2 554.344261 1106.67397 0.39445 0.00021866 -0.15556 -8.6234E-05 0.23889 0.00013243 554.3441106318645 72.324 0.50998 75.704 75.418 75.928 3.3799 92 36 3 0 0 0 0.1249 1 17693 17693 29.082 0.59474 1 260500 14340 3119 9194 9200 17544 17544 0.12489838073315696 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN47_class_I_Rep_2 3 554.3442993164062 2 554.344261 1106.67397 0.43091 0.00023887 -0.18122 -0.00010046 0.24969 0.00013841 554.3440264006841 72.637 1.0064 75.934 75.622 76.629 3.2971 168 85 3 0 0 0 0.1249 2 17751 17751;17827 29.082 0.59474 1 305930 14341 3119 9194 9200 17545;17546 17545 0.12489838073315696 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN48_class_I_Rep_1 5 554.3443603515625 2 554.344261 1106.67397 0.53043 0.00029404 -0.1723 -9.5515E-05 0.35813 0.00019853 554.3440308517155 72.585 0.31762 76.059 75.787 76.105 3.4732 66 25 3 0 0 0 0.088679 2 17032 16993;17032 36.506 2.4038 1 1285400 14342 3119 9194 9200 17547;17548 17548 0.12489838073315696 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN48_class_I_Rep_1 5 554.3443603515625 2 554.344261 1106.67397 0.5298 0.00029369 -0.22034 -0.00012215 0.30945 0.00017154 554.3440048909098 72.8 0.77842 76.273 76.105 76.883 3.4732 157 62 4 0 0 0 0.043452 3 17107 17069;17107;17145 51.63 17.527 1 1744500 14343 3119 9194 9200 17549;17550;17551 17550 0.12489838073315696 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN48_class_I_Rep_2 6 554.3443603515625 2 554.344261 1106.67397 0.48729 0.00027013 -0.13014 -7.214E-05 0.35715 0.00019799 554.344069942107 72.576 0.51668 76.141 75.682 76.198 3.5645 146 47 4 0 0 0 0.053261 1 16996 16996 47.594 13.492 1 1545600 14344 3119 9194 9200 17552 17552 0.12489838073315696 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN48_class_I_Rep_2 6 554.3442993164062 2 554.344261 1106.67397 0.48745 0.00027022 -0.1604 -8.8916E-05 0.32705 0.0001813 554.3440561799297 72.716 0.61456 76.281 76.176 76.791 3.5645 154 57 4 0 0 0 0.033731 2 17034 17034;17102 55.503 7.1569 1 1491800 14345 3119 9194 9200 17553;17554 17553 0.12489838073315696 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN48_class_I_Rep_3 7 554.3443603515625 2 554.344261 1106.67397 0.44637 0.00024744 -0.11663 -6.4656E-05 0.32974 0.00018279 554.3440768569235 72.694 1.0128 76.231 75.665 76.678 3.5373 202 88 3 0 0 0 0.025281 6 16908 16834;16871;16908;16944;16988;17042 60.074 23.947 1 1712400 14346 3119 9194 9200 17555;17556;17557;17558;17559;17560 17557 0.12489838073315696 ILYQRVNF 8 Unmodified _ILYQRVNF_ 0 0 0 NBAS|p.Q1436Sfs*7|1|0.48|ENSG00000151779|chr2:15330639-15330639|G/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS NBAS|p.Q1436Sfs*7|1|0.48|ENSG00000151779|chr2:15330639-15330639|G/-|frameshift_variant NBAS|p.Q1436Sfs*7|1|0.48|ENSG00000151779|chr2:15330639-15330639|G/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 526.7969970703125 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 26.526 1 30.093 29.593 30.593 3.5667 0 0 0 0.40604 1 3271 3271 2.5775 0.27475 1 14347 3604 9195 9201 17561 17561 0.05773753059793307 ILYRRLCCYF 10 Unmodified _ILYRRLCCYF_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|121|2|anti-sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|121|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 450.5653991699219 3 450.566749 1348.67842 -0.75419 -0.00033981 -1.1009 -0.00049601 -1.8551 -0.00083583 450.90056732560157 37.452 0.4638 40.699 40.422 40.886 3.247 44 32 2 0 0 0 0.56247 1 7150 7150 2.086 0 1 78624 + 14348 29439 9196 9202 17562 17562 0.01802655952906207 ILYYQQLF 8 Unmodified _ILYYQQLF_ 0 0 0 REV__ENSG00000147206|ENST00000395065|NXF3 REV__ENSG00000147206|ENST00000395065|NXF3 MSMS UPN48_class_I_Rep_1 5 544.2931518554688 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 63.707 1 67.164 66.664 67.664 3.4578 0 0 0 0.40625 1 14363 14363 2.3027 0 1 + 14349 19564 9197 9203 17563 17563 0.03515815108403331 IMCMYVCVPV 10 Unmodified _IMCMYVCVPV_ 0 0 0 L1MEd_dup8209|chr6:72885995-72886994:+|1.043609152411341|0.0042439032338012|7.94|149.0|15|2|sense L1MEd_dup8209|chr6:72885995-72886994:+|1.043609152411341|0.0042439032338012|7.94|149.0|15|2|sense L1MEd_dup8209|chr6:72885995-72886994:+|1.043609152411341|0.0042439032338012|7.94|149.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 579.263916015625 2 579.264927 1156.5153 NaN NaN NaN NaN NaN NaN NaN 70.189 1 73.472 72.972 73.972 3.2828 0 0 0 0.53105 1 17087 17087 7.9102 0 1 14350 13217 9198 9204 17564 17564 -0.056696064847756134 IMEIDVKY 8 Unmodified _IMEIDVKY_ 0 0 0 REV__LTR13A_dup6|chr1:32666688-32667653:+|2.590711646602275|0.1844215574800527|3.81|151.0|11|2|sense REV__LTR13A_dup6|chr1:32666688-32667653:+|2.590711646602275|0.1844215574800527|3.81|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 505.7654724121094 2 505.764986 1009.51542 NaN NaN NaN NaN NaN NaN NaN 40.831 1 44.199 43.699 44.699 3.3676 0 0 0 0.4044 1 8171 8171 4.756 0 1 + 14351 30844 9199 9205 17565 17565 0.011041761027286157 IMESRGKATI 10 Unmodified _IMESRGKATI_ 0 0 0 HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|83|2|sense HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|83|2|sense HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.30517578125 2 553.305341 1104.59613 0.16044 8.8772E-05 0.20344 0.00011256 0.36388 0.00020134 553.3054304752067 30.447 0.37086 30.447 30.246 30.617 0 49 27 2 0 0 0 0.56354 1 5008 5008 1.3295 0.63916 1 77808 14352 8350 9200 9206 17566 17566 0.048014571456405974 IMFFTLKKI 9 Unmodified _IMFFTLKKI_ 0 0 0 HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|67|2|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|67|2|anti-sense HAL1_dup1688|chr1:229336233-229337678:+|3.37399217439189|0.1113324625069086|4.92|151.0|67|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.8479614257812 2 570.846113 1139.67767 NaN NaN NaN NaN NaN NaN NaN 29.142 1 29.142 28.642 29.642 0 0 0 0 0.40038 1 4575 4575 0.6015 0 1 14353 7825 9201 9207 17567 17567 0.11342184575551073 IMFPFFFHSFF 11 Unmodified _IMFPFFFHSFF_ 0 0 0 L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|25|1|anti-sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|25|1|anti-sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_1 2 489.5714111328125 3 489.570377 1465.6893 NaN NaN NaN NaN NaN NaN NaN 43.503 1 47.191 46.691 47.691 3.6875 0 0 0 0.38417 1 8952 8952 0.50596 0 1 14354 11244 9202 9208 17568 17568 -0.024916184011317455 IMFVSKYY 8 Unmodified _IMFVSKYY_ 0 0 0 L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|89|1|anti-sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|89|1|anti-sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|89|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.7691650390625 2 525.770071 1049.52559 -0.13792 -7.2513E-05 -0.56753 -0.00029839 -0.70545 -0.0003709 525.76972884992 26.963 0.50887 30.73 30.505 31.014 3.7662 70 40 2 0 0 0 0.82752 1 3886 3886 0.79363 0 1 95038 14355 11074 9203 9209 17569 17569 0.0028078382797502854 IMHMVIHLI 9 Unmodified _IMHMVIHLI_ 0 0 0 L1MB4_dup7392|chr16:47339408-47340990:+|1.0917380734329667|0.0550171441652392|4.31|151.0|86|2|anti-sense L1MB4_dup7392|chr16:47339408-47340990:+|1.0917380734329667|0.0550171441652392|4.31|151.0|86|2|anti-sense L1MB4_dup7392|chr16:47339408-47340990:+|1.0917380734329667|0.0550171441652392|4.31|151.0|86|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.8138427734375 2 553.81429 1105.61403 -0.0072182 -3.9975E-06 -0.98174 -0.0005437 -0.98896 -0.0005477 553.8135359959416 38.539 0.67502 42.205 41.87 42.545 3.6652 62 47 2 0 0 0 0.44858 1 7477 7477 5.2307 0 1 92321 14356 10572 9204 9210 17570 17570 0.06544500866789349 IMIFKHLLY 9 Unmodified _IMIFKHLLY_ 0 0 0 L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|54|2|anti-sense L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|54|2|anti-sense L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_3 4 589.341796875 2 589.343738 1176.67292 NaN NaN NaN NaN NaN NaN NaN 86.833 1 90.213 89.713 90.713 3.3801 0 0 0 0.40038 1 21763 21763 0.6015 0 1 14357 12994 9205 9211 17571 17571 0.09165300432778167 IMKDLDQCRD 10 Unmodified _IMKDLDQCRD_ 0 0 0 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 ENSG00000197747|ENST00000368811|S100A10 MSMS UPN47_class_I_Rep_2 3 618.7915649414062 2 618.789198 1235.56384 NaN NaN NaN NaN NaN NaN NaN 55.432 1 58.742 58.242 59.242 3.3102 0 0 0 0.53105 1 12611 12611 1.1933 0.12188 1 14358 5389 9206 9212 17572 17572 -0.04451698319689967 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(53)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN46_class_I_Rep_3 1 545.3021850585938 2 545.302267 1088.58998 0.31422 0.00017135 0.093881 5.1194E-05 0.4081 0.00022254 545.3022398019135 63.245 0.34682 63.245 62.977 63.324 0 60 36 2 0 0 0 0.039218 1 14187 14187 53.317 26.093 1 1266600 14359 3338 9207 9213 17573 17573 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(53)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN46_class_I_Rep_3 1 545.302490234375 2 545.302267 1088.58998 0.31474 0.00017163 0.0019562 1.0667E-06 0.3167 0.0001727 545.3021797924704 63.431 0.13943 63.431 63.324 63.463 0 32 16 2 0 0 0 0.039218 1 14235 14235 53.317 24.822 1 780960 14360 3338 9207 9213 17574 17574 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(46)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN46_class_I_Rep_3 1 545.3021850585938 2 545.302267 1088.58998 0.31516 0.00017186 0.36531 0.00019921 0.68047 0.00037106 545.30241906713 63.575 0.1475 63.575 63.463 63.611 0 30 16 2 0 0 0 0.056914 1 14267 14267 46.022 18.799 1 740650 14361 3338 9207 9213 17575 17575 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(78)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN47_class_I_Rep_1 2 545.3023071289062 2 545.302267 1088.58998 0.42075 0.00022944 -0.25368 -0.00013833 0.16707 9.1104E-05 545.3021165249805 57.06 1.0904 60.517 60.136 61.226 3.4572 210 97 3 0 0 0 0.0055684 5 13090 13090;13126;13164;13202;13243 78.06 30.466 1 1071200 14362 3338 9207 9213 17576;17577;17578;17579;17580 17576 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(53)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS UPN47_class_I_Rep_1 2 545.302001953125 2 545.302267 1088.58998 NaN NaN NaN NaN NaN NaN NaN 56.843 1 60.3 59.8 60.8 3.4572 0 0 0 0.0203 1 13013 13013 53.317 26.093 1 14363 3338 9207 9213 17581 17581 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(61)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS UPN47_class_I_Rep_1 2 545.30224609375 2 545.302267 1088.58998 NaN NaN NaN NaN NaN NaN NaN 56.975 1 60.432 59.932 60.932 3.4572 0 0 0 0.0011614 1 13054 13054 61.09 27.645 1 14364 3338 9207 9213 17582 17582 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(61)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN47_class_I_Rep_2 3 545.3020629882812 2 545.302267 1088.58998 0.48896 0.00026663 -0.44628 -0.00024336 0.042672 2.3269E-05 545.3020027407431 57.129 0.31157 60.42 60.174 60.486 3.2912 48 27 2 0 0 0 0.023676 1 13116 13116 61.09 27.645 1 1210000 14365 3338 9207 9213 17583 17583 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(78)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN47_class_I_Rep_2 3 545.3024291992188 2 545.302267 1088.58998 0.48917 0.00026675 -0.20233 -0.00011033 0.28684 0.00015641 545.3021130874101 57.468 0.91514 60.76 60.472 61.387 3.2912 149 75 2 0 0 0 0.0055684 5 13231 13157;13194;13231;13270;13306 87.258 31.755 1 1728300 14366 3338 9207 9213 17584;17585;17586;17587;17588 17586 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(78)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS UPN47_class_I_Rep_3 4 545.3023681640625 2 545.302267 1088.58998 0.35162 0.00019174 -0.26846 -0.00014639 0.083159 4.5347E-05 545.3021612761208 57.455 1.1236 60.623 60.196 61.32 3.1681 219 90 4 0 0 0 0.0055684 6 13238 13199;13238;13277;13314;13350;13394 78.06 30.466 1 946820 14367 3338 9207 9213 17589;17590;17591;17592;17593;17594 17590 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MATCH UPN47_class_I_Rep_2 3 2 545.302267 1088.58998 0.46773 0.00025505 -0.21633 -0.00011797 0.2514 0.00013709 545.3020531291355 59.939 0.55029 63.212 62.916 63.466 3.2731 0.0043349 -0.00020972 NaN 53.317 54 32 2 NaN NaN NaN NaN 0 NaN NaN 0 104400 14368 3338 9207 9213 106 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MATCH UPN48_class_I_Rep_2 6 2 545.302267 1088.58998 0.59093 0.00032224 -5.6147 -0.0030617 -5.0238 -0.0027395 545.798846658316 57.167 0.046577 60.681 60.648 60.695 3.5142 -0.0067231 -0.0058832 NaN 78.06 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 53479 14369 3338 9207 9213 106 0.04922938914091901 IMMLIQKL 8 Unmodified _IMMLIQKL_ 0 0 0 L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|3|1|sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|3|1|sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 495.2966613769531 2 495.297942 988.58133 NaN NaN NaN NaN NaN NaN NaN 47.039 1 50.676 50.176 51.176 3.6363 0 0 0 0.40604 1 9190 9190 2.5775 0 1 14370 9507 9208 9214 17595 17595 0.08658293743940249 IMNVWIFRP 9 Unmodified _IMNVWIFRP_ 0 0 0 MLT1F1_dup2648|chr16:10463293-10463787:+|1.425766667789134|0.066636961279897|4.42|150.0|21|3|sense MLT1F1_dup2648|chr16:10463293-10463787:+|1.425766667789134|0.066636961279897|4.42|150.0|21|3|sense MLT1F1_dup2648|chr16:10463293-10463787:+|1.425766667789134|0.066636961279897|4.42|150.0|21|3|sense MSMS UPN48_class_I_Rep_1 5 588.32421875 2 588.323337 1174.63212 NaN NaN NaN NaN NaN NaN NaN 62.178 1 65.646 65.146 66.146 3.4678 0 0 0 0.39428 1 13896 13896 2.0598 0 1 14371 16387 9209 9215 17596 17596 0.05178959113140991 IMPKPKHV 8 Unmodified _IMPKPKHV_ 0 0 0 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 MSMS UPN47_class_I_Rep_2 3 475.28759765625 2 475.286223 948.557893 NaN NaN NaN NaN NaN NaN NaN 111.28 1 114.8 114.3 115.3 3.5226 0 0 0 0.40604 1 27082 27082 2.5775 0 1 14372 2782 9210 9216 17597 17597 0.08155616021622336 IMPSRFMH 8 Unmodified _IMPSRFMH_ 0 0 0 L1MB4_dup8175|chr19:8454091-8454681:-|1.5273687787648522|0.0351029428322539|5.44|151.0|38|3|anti-sense L1MB4_dup8175|chr19:8454091-8454681:-|1.5273687787648522|0.0351029428322539|5.44|151.0|38|3|anti-sense L1MB4_dup8175|chr19:8454091-8454681:-|1.5273687787648522|0.0351029428322539|5.44|151.0|38|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 509.771728515625 2 509.75169 1017.48883 0.42281 0.00021553 -0.73765 -0.00037602 -0.31484 -0.00016049 509.75122271776155 57.162 0.1169 60.676 60.621 60.738 3.5142 11 7 2 0 0 0 0.72333 1 12331 12331 5.7604 5.7604 1 53990 14373 10588 9211 9217 17598 17598 -0.01921791269580808 IMQKWFKF 8 Unmodified _IMQKWFKF_ 0 0 0 REV__L1MA3_dup7707|chr15:44702090-44702993:-|1.3777825920390792|0.0350238850284418|5.3|151.0|14|2|sense REV__L1MA3_dup7707|chr15:44702090-44702993:-|1.3777825920390792|0.0350238850284418|5.3|151.0|14|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 563.8035888671875 2 564.307155 1126.59976 0.34104 0.00019245 -2.7474 -0.0015504 -2.4063 -0.0013579 564.3055473859326 35.191 0.063927 38.863 38.827 38.891 3.6721 9 7 2 0 0 0 0.72333 1 5673 5673 2.3027 0.24298 1 44385 + 14374 25107 9212 9218 17599 17599 0.04152171710143193 IMRVPMLHY 9 Unmodified _IMRVPMLHY_ 0 0 0 REV__L1PA6_dup573|chr2:61036000-61040733:+|3.333365246754994|0.1797749692126194|4.21|151.0|28|1|sense REV__L1PA6_dup573|chr2:61036000-61040733:+|3.333365246754994|0.1797749692126194|4.21|151.0|28|1|sense MSMS UPN48_class_I_Rep_2 6 580.3079833984375 2 580.309372 1158.60419 NaN NaN NaN NaN NaN NaN NaN 54.314 1 57.896 57.396 58.396 3.5817 0 0 0 0.36505 1 11468 11468 7.2892 0 1 + 14375 29945 9213 9219 17600 17600 0.031233128614303496 IMSDTISSGW 10 Unmodified _IMSDTISSGW_ 0 0 0 REV__ENSG00000141086|ENST00000574481|CTRL REV__ENSG00000141086|ENST00000574481|CTRL MULTI-MSMS UPN47_class_I_Rep_1 2 548.7529907226562 2 548.752607 1095.49066 -0.043964 -2.4126E-05 1.2771 0.00070082 1.2331 0.00067669 548.7534216584231 25.087 0.36608 28.837 28.723 29.089 3.7495 39 33 2 0 0 0 0.56078 1 3386 3386 3.2813 0 1 80597 + 14376 19365 9214 9220 17601 17601 -0.05326503770606905 IMSRLYTVY 9 Unmodified _IMSRLYTVY_ 0 0 0 L1ME3F_dup3229|chr12:11691526-11691846:-|3.4718673371471898|0.0115557829283632|8.23|151.0|19|1|anti-sense L1ME3F_dup3229|chr12:11691526-11691846:-|3.4718673371471898|0.0115557829283632|8.23|151.0|19|1|anti-sense L1ME3F_dup3229|chr12:11691526-11691846:-|3.4718673371471898|0.0115557829283632|8.23|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7865600585938 2 573.30481 1144.59507 NaN NaN NaN NaN NaN NaN NaN 61.857 1 65.225 64.725 65.725 3.3681 0 0 0 0.39326 1 14532 14532 2.3027 0.4585 1 14377 12817 9215 9221 17602 17602 0.028552427767408517 IMTWKWTRRTR 11 Unmodified _IMTWKWTRRTR_ 0 0 0 REV__ENST00000530642.1_1_11:126146413-126147044:+|nuORF REV__ENST00000530642.1_1_11:126146413-126147044:+|nuORF MSMS UPN48_class_I_Rep_2 6 512.2855834960938 3 512.285633 1533.83507 NaN NaN NaN NaN NaN NaN NaN 28.913 1 32.545 32.045 33.045 3.6316 0 0 0 0.38417 1 4038 4038 0.094841 0 1 + 14378 22845 9216 9222 17603 17603 0.0895065716758836 IMVTEMKKF 9 Unmodified _IMVTEMKKF_ 0 0 0 L1M4c_dup209|chr1:244400763-244401467:-|1.2876071586505955|0.018053951591971|6.16|151.0|22|3|sense L1M4c_dup209|chr1:244400763-244401467:-|1.2876071586505955|0.018053951591971|6.16|151.0|22|3|sense L1M4c_dup209|chr1:244400763-244401467:-|1.2876071586505955|0.018053951591971|6.16|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 563.8047485351562 2 563.803588 1125.59262 0.46922 0.00026455 0.26469 0.00014923 0.73391 0.00041378 563.803672608023 35.489 0.62341 39.177 38.857 39.48 3.6877 85 59 2 0 0 0 0.43153 1 5796 5796 6.2058 0 1 108140 14379 9045 9217 9223 17604 17604 0.034850710474302105 IMVWFCFD 8 Unmodified _IMVWFCFD_ 0 0 0 REV__HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|256|2|anti-sense REV__HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|256|2|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7344360351562 2 530.735174 1059.4558 NaN NaN NaN NaN NaN NaN NaN 18.933 1 22.52 22.02 23.02 3.5874 0 0 0 0.40738 1 1339 1339 0.79363 0 1 + 14380 23785 9218 9224 17605 17605 -0.07155418112279222 IMWRAYRQR 9 Unmodified _IMWRAYRQR_ 0 0 0 REV__nc|ENSG00000078814|A7E2Y1-2|MYH7B REV__nc|ENSG00000078814|A7E2Y1-2|MYH7B MSMS UPN48_class_I_Rep_1 5 640.3450317382812 2 640.345666 1278.67678 NaN NaN NaN NaN NaN NaN NaN 102.19 1 105.81 105.31 106.31 3.6164 0 0 0 0.4007 1 24649 24649 0.52476 0 1 + 14381 17890 9219 9225 17606 17606 0.048587829791586046 IMWYWSFCT 9 Unmodified _IMWYWSFCT_ 0 0 0 L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|240|3|anti-sense L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|240|3|anti-sense L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|240|3|anti-sense MSMS UPN47_class_I_Rep_2 3 618.76708984375 2 618.764463 1235.51437 NaN NaN NaN NaN NaN NaN NaN 72.186 1 75.476 74.976 75.976 3.2899 0 0 0 0.39428 1 17682 17682 2.0598 0.21551 1 14382 9967 9220 9226 17607 17607 -0.09396361537801567 IMYALGRVKRF 11 Unmodified _IMYALGRVKRF_ 0 0 0 ENST00000415922.6_1_6:26638669-26638894:-|nuORF ENST00000415922.6_1_6:26638669-26638894:-|nuORF ENST00000415922.6_1_6:26638669-26638894:-|nuORF MSMS UPN46_class_I_Rep_3 1 451.932373046875 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 97.167 1 97.167 96.667 97.667 0 0 0 0 0.38417 1 23636 23636 0.50596 0.34663 1 14383 6645 9221 9227 17608 17608 0.112819665043844 INAIDSRRMQ 10 Unmodified _INAIDSRRMQ_ 0 0 0 nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1 nc|ENSG00000023287|Q8TDY2-2|RB1CC1 nc|ENSG00000023287|Q8TDY2-2|RB1CC1 MSMS UPN47_class_I_Rep_2 3 602.3140258789062 2 602.316771 1202.61899 NaN NaN NaN NaN NaN NaN NaN 29.042 1 32.535 32.035 33.035 3.4923 0 0 0 0.53105 1 4595 4595 1.3295 0 1 14384 815 9222 9228 17609 17609 0.02578476263124685 INAIDSRRMQ 10 Unmodified _INAIDSRRMQ_ 0 0 0 nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1 nc|ENSG00000023287|Q8TDY2-2|RB1CC1 nc|ENSG00000023287|Q8TDY2-2|RB1CC1 MSMS UPN47_class_I_Rep_3 4 602.3143920898438 2 602.316771 1202.61899 NaN NaN NaN NaN NaN NaN NaN 29.064 1 32.387 31.887 32.887 3.3235 0 0 0 0.53105 1 4645 4645 1.3295 0 1 14385 815 9222 9228 17610 17610 0.02578476263124685 INDLMQVLY 9 Unmodified _INDLMQVLY_ 0 0 0 nc|ENSG00000151917|Q5SZJ8-3|BEND6;ENSG00000151917|ENST00000370746|BEND6 nc|ENSG00000151917|Q5SZJ8-3|BEND6 nc|ENSG00000151917|Q5SZJ8-3|BEND6 MSMS UPN47_class_I_Rep_2 3 554.7891845703125 2 554.788992 1107.56343 NaN NaN NaN NaN NaN NaN NaN 74.64 1 77.953 77.453 78.453 3.3127 0 0 0 0.29868 1 18401 18401 10.824 0.64053 1 14386 3608 9223 9229 17611 17611 0.013952500227787823 INEALKAHIL 10 Unmodified _INEALKAHIL_ 0 0 0 ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL MSMS UPN47_class_I_Rep_2 3 561.7784423828125 2 561.337498 1120.66044 NaN NaN NaN NaN NaN NaN NaN 79.504 1 82.86 82.36 83.36 3.3554 0 0 0 0.53105 1 19793 19793 1.4819 0 1 14387 2792 9224 9230 17612 17612 0.10493980294086214 INEAMELKVG 10 Unmodified _INEAMELKVG_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MSMS UPN48_class_I_Rep_2 6 552.2910766601562 2 552.291899 1102.56925 NaN NaN NaN NaN NaN NaN NaN 63.713 1 67.188 66.688 67.687 3.4743 0 0 0 0.53105 1 14348 14348 5.2969 0.96765 1 14388 3404 9225 9231 17613 17613 0.022063485344460787 INEKKDTTY 9 Unmodified _INEKKDTTY_ 0 0 0 L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2846069335938 2 556.285128 1110.5557 -0.022775 -1.2669E-05 -0.12695 -7.062E-05 -0.14972 -8.3289E-05 556.2850540207653 35.963 0.42555 39.639 39.445 39.87 3.6762 51 28 2 0 0 0 0.15122 1 6688 6688 25.399 0 1 87609 14389 14238 9226 9232 17614 17614 0.0048481402686775255 INEKKDTTY 9 Unmodified _INEKKDTTY_ 0 0 0 L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2847900390625 2 556.285128 1110.5557 0.045484 2.5302E-05 -0.34201 -0.00019025 -0.29652 -0.00016495 556.2850179295679 36.262 0.44036 39.673 39.444 39.884 3.4114 51 32 2 0 0 0 0.1249 2 6751 6751;6790 29.082 1.4528 1 124660 14390 14238 9226 9232 17615;17616 17615 0.0048481402686775255 INEKKDTTY 9 Unmodified _INEKKDTTY_ 0 0 0 L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.2860107421875 2 556.285128 1110.5557 -0.091004 -5.0624E-05 -0.19249 -0.00010708 -0.28349 -0.0001577 556.2851181676209 36.387 0.6321 39.642 39.342 39.974 3.2547 65 41 2 0 0 0 0.17897 2 6807 6785;6807 22.736 0 1 86842 14391 14238 9226 9232 17617;17618 17618 0.0048481402686775255 INEMQGTF 8 Unmodified _INEMQGTF_ 0 0 0 REV__ENST00000582147.1_1_18:334691-500598:-|nuORF REV__ENST00000582147.1_1_18:334691-500598:-|nuORF MSMS UPN48_class_I_Rep_1 5 470.21807861328125 2 470.21566 938.416767 NaN NaN NaN NaN NaN NaN NaN 62.356 1 65.818 65.318 66.318 3.4625 0 0 0 0.40157 1 13948 13948 7.2892 2.0586 1 + 14392 19842 9227 9233 17619 17619 -0.05490427142296994 INERSSTF 8 Unmodified _INERSSTF_ 0 0 0 REV__ENST00000550891.1_12:52096676-52099307:+|nuORF REV__ENST00000550891.1_12:52096676-52099307:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 477.2378845214844 2 477.237981 952.461409 -0.30816 -0.00014706 -0.1285 -6.1323E-05 -0.43665 -0.00020839 477.2378863152738 35.086 0.60953 38.772 38.541 39.15 3.6859 85 44 3 0 0 0 0.82752 2 6401 6401;6439 34.402 3.1334 1 163850 + 14393 22956 9228 9234 17620;17621 17620 -0.016722800046181874 INERSSTF 8 Unmodified _INERSSTF_ 0 0 0 REV__ENST00000550891.1_12:52096676-52099307:+|nuORF REV__ENST00000550891.1_12:52096676-52099307:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 477.23785400390625 2 477.237981 952.461409 -0.25523 -0.00012181 0.03317 1.583E-05 -0.22206 -0.00010598 477.23784106194626 35.42 0.66945 38.834 38.482 39.152 3.4139 79 42 3 0 0 0 0.82752 2 6542 6504;6542 41.84 3.6641 1 119860 + 14394 22956 9228 9234 17622;17623 17623 -0.016722800046181874 INERSSTF 8 Unmodified _INERSSTF_ 0 0 0 REV__ENST00000550891.1_12:52096676-52099307:+|nuORF REV__ENST00000550891.1_12:52096676-52099307:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 477.2376403808594 2 477.237981 952.461409 -0.49263 -0.0002351 0.0046547 2.2214E-06 -0.48798 -0.00023288 477.2378601668699 35.506 0.70142 38.76 38.495 39.197 3.2547 78 47 2 0 0 0 0.82752 2 6586 6586;6627 34.402 3.1334 1 147310 + 14395 22956 9228 9234 17624;17625 17624 -0.016722800046181874 INERSSTF 8 Unmodified _INERSSTF_ 0 0 0 REV__ENST00000550891.1_12:52096676-52099307:+|nuORF REV__ENST00000550891.1_12:52096676-52099307:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 477.237981 952.461409 -0.25523 -0.00012181 0.03317 1.583E-05 -0.22206 -0.00010598 477.23784106194626 35.42 0.66945 38.834 38.482 39.152 3.4139 0.04521 6.1187E-05 NaN 34.402 79 42 3 NaN NaN NaN NaN 0 NaN NaN 0 119860 + 14396 22956 9228 9234 -0.016722800046181874 INHILLVNQ 9 Unmodified _INHILLVNQ_ 0 0 0 L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|57|3|sense L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|57|3|sense L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.3167724609375 2 532.316566 1062.61858 0.51494 0.00027411 -0.15773 -8.3963E-05 0.3572 0.00019015 532.3164688278962 110.58 0.096313 114.24 114.21 114.31 3.6654 17 9 3 0 0 0 0.48846 1 26246 26246 1.8442 0 1 818980 14397 10340 9229 9235 17626 17626 0.0897742460556401 INHILLVNQ 9 Unmodified _INHILLVNQ_ 0 0 0 L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|57|3|sense L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|57|3|sense L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|57|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 532.316566 1062.61858 0.32676 0.00017394 -0.0686 -3.6517E-05 0.25816 0.00013742 532.316456495745 110.51 0.078377 114.14 114.12 114.2 3.6326 -0.10019 7.2038E-05 NaN 1.8442 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1099300 14398 10340 9229 9235 0.0897742460556401 INHSTQYEI 9 Unmodified _INHSTQYEI_ 0 0 0 REV__Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|58|3|sense REV__Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|58|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7696533203125 2 552.769645 1103.52474 0.34574 0.00019112 0.12741 7.043E-05 0.47316 0.00026155 552.7696983100662 53.619 0.58058 57.147 56.927 57.507 3.5278 67 37 2 0 0 0 0.46869 1 11985 11985 3.9444 0 1 153090 + 14399 32329 9230 9236 17627 17627 -0.022883392873836783 INIAASNVF 9 Unmodified _INIAASNVF_ 0 0 0 REV__L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|109|2|anti-sense REV__L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|109|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 474.76092529296875 2 474.761092 947.507631 -0.25419 -0.00012068 -0.65047 -0.00030882 -0.90466 -0.0004295 474.7609988473079 42.028 0.80206 45.707 45.293 46.095 3.6792 118 55 3 0 0 0 0.36392 1 8535 8535 10.074 2.1638 1 161400 + 14400 29148 9231 9237 17628 17628 0.03177784897479796 INIDSLDDLC 10 Unmodified _INIDSLDDLC_ 0 0 0 REV__L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|119|2|anti-sense REV__L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|119|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.7655029296875 2 560.763171 1119.51179 NaN NaN NaN NaN NaN NaN NaN 39.366 1 42.871 42.371 43.371 3.5048 0 0 0 0.53105 1 6942 6942 11.495 4.7715 1 + 14401 28924 9232 9238 17629 17629 -0.04318538461757271 INIKKITGLYF 11 Unmodified _INIKKITGLYF_ 0 0 0 REV__ENST00000467953.5_1_1:93575811-93580308:+|nuORF REV__ENST00000467953.5_1_1:93575811-93580308:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 437.2669982910156 3 437.267463 1308.78056 -0.033681 -1.4728E-05 -0.0015734 -6.8801E-07 -0.035254 -1.5416E-05 437.26721137572576 51.434 1.0194 54.959 54.2 55.219 3.5246 139 70 3 0 0 0 22.551 1 10556 10556 1.2148 0 1 303580 + 14402 19423 9233 9239 17630 17630 0.13851968567837503 INILELLKEPT 11 Unmodified _INILELLKEPT_ 0 0 0 REV__L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|40|2|sense REV__L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|40|2|sense MSMS UPN46_class_I_Rep_3 1 641.8826293945312 2 641.884478 1281.7544 NaN NaN NaN NaN NaN NaN NaN 93.503 1 93.503 93.003 94.003 0 0 0 0 0.38417 1 22663 22663 2.7352 1.2533 1 + 14403 25756 9234 9240 17631 17631 0.12479654605704127 INKKAQRID 9 Unmodified _INKKAQRID_ 0 0 0 nc|ENSG00000006025|Q9BZF2-2|OSBPL7;ENSG00000006025|ENST00000007414|OSBPL7 nc|ENSG00000006025|Q9BZF2-2|OSBPL7 nc|ENSG00000006025|Q9BZF2-2|OSBPL7 MULTI-MSMS UPN47_class_I_Rep_2 3 543.3236083984375 2 543.324922 1084.63529 0.0099505 5.4064E-06 -1.1235 -0.00061043 -1.1136 -0.00060502 543.3243972306914 34.687 0.24671 38.112 37.98 38.227 3.4253 25 16 2 0 0 0 0.36392 1 6338 6338 10.074 0.6908 1 55524 14404 711 9235 9241 17632 17632 0.09635925491511443 INKKAQRID 9 Unmodified _INKKAQRID_ 0 0 0 nc|ENSG00000006025|Q9BZF2-2|OSBPL7;ENSG00000006025|ENST00000007414|OSBPL7 nc|ENSG00000006025|Q9BZF2-2|OSBPL7 nc|ENSG00000006025|Q9BZF2-2|OSBPL7 MSMS UPN47_class_I_Rep_3 4 543.3206176757812 2 543.324922 1084.63529 NaN NaN NaN NaN NaN NaN NaN 34.995 1 38.259 37.759 38.759 3.2639 0 0 0 0.37692 1 6428 6428 6.2058 0.47393 1 14405 711 9235 9241 17633 17633 0.09635925491511443 INKKAQRID 9 Unmodified _INKKAQRID_ 0 0 0 nc|ENSG00000006025|Q9BZF2-2|OSBPL7;ENSG00000006025|ENST00000007414|OSBPL7 nc|ENSG00000006025|Q9BZF2-2|OSBPL7 nc|ENSG00000006025|Q9BZF2-2|OSBPL7 MSMS UPN47_class_I_Rep_3 4 543.323486328125 2 543.324922 1084.63529 NaN NaN NaN NaN NaN NaN NaN 35.144 1 38.408 37.908 38.908 3.2639 0 0 0 0.37692 1 6474 6474 6.2058 1.8765 1 14406 711 9235 9241 17634 17634 0.09635925491511443 INLATIKT 8 Unmodified _INLATIKT_ 0 0 0 L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|35|1|sense L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|35|1|sense L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|35|1|sense MSMS UPN48_class_I_Rep_3 7 437.267333984375 2 437.273835 872.533118 NaN NaN NaN NaN NaN NaN NaN 51.508 1 55.119 54.619 55.619 3.6105 0 0 0 0.40527 1 10563 10563 3.5965 0 1 14407 14645 9236 9242 17635 17635 0.09175259419919257 INPKGLLGGI 10 Unmodified _INPKGLLGGI_ 0 0 0 HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|192|3|anti-sense HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|192|3|anti-sense HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|192|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.30950927734375 2 491.30821 980.601866 0.48765 0.00023959 0.78723 0.00038677 1.2749 0.00062636 491.3084897026482 110.82 0.12753 114.35 114.28 114.41 3.5271 20 13 2 0 0 0 0.56543 1 26975 26975 0 0 1 156410 14408 8176 9237 9243 17636 17636 0.11078923719639988 INPKGLLGGI 10 Unmodified _INPKGLLGGI_ 0 0 0 HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|192|3|anti-sense HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|192|3|anti-sense HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|192|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 491.30821 980.601866 0.48765 0.00023959 0.78723 0.00038677 1.2749 0.00062636 491.3084897026482 110.82 0.12753 114.35 114.28 114.41 3.5271 0.052556 -0.00025049 NaN 0 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 156410 14409 8176 9237 9243 0.11078923719639988 INPSRSTKL 9 Unmodified _INPSRSTKL_ 0 0 0 REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2 REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2 MULTI-MSMS UPN46_class_I_Rep_3 1 508.2809753417969 2 508.298373 1014.58219 0.28089 0.00014278 -1.67 -0.00084886 -1.3891 -0.00070608 508.2973191784827 46.393 0.40888 46.393 46.239 46.648 0 73 44 2 0 0 0 0.28552 1 9572 9572 14.838 0.93222 1 197970 + 14410 20073 9238 9244 17637 17637 0.07548547708859132 INQAALPSYL 10 Unmodified _INQAALPSYL_ 0 0 0 REV__Tigger4_dup165|chr2:32526070-32528220:+|2.352527062515613|0.1643615067259146|3.84|151.0|135|3|anti-sense REV__Tigger4_dup165|chr2:32526070-32528220:+|2.352527062515613|0.1643615067259146|3.84|151.0|135|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 544.8397827148438 2 545.300581 1088.58661 0.37083 0.00020221 0.30859 0.00016827 0.67942 0.00037049 545.8022053117194 69.236 0.056038 72.512 72.473 72.53 3.2761 5 3 2 0 0 0 0.84575 1 16798 16798 3.5965 0.31518 1 25043 + 14411 32776 9239 9245 17638 17638 0.0458601213174461 INQLKAVIQF 10 Unmodified _INQLKAVIQF_ 0 0 0 REV__Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|76|3|anti-sense REV__Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|76|3|anti-sense MSMS UPN48_class_I_Rep_1 5 587.307373046875 2 587.353148 1172.69174 NaN NaN NaN NaN NaN NaN NaN 64.71 1 68.164 67.664 68.664 3.4541 0 0 0 0.53105 1 14671 14671 1.4819 0 1 + 14412 32702 9240 9246 17639 17639 0.11230553328164206 INQQPHEC 8 Unmodified _INQQPHEC_ 0 0 0 REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|31|2|sense REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|31|2|sense MSMS UPN47_class_I_Rep_3 4 484.3842468261719 2 484.716359 967.418164 NaN NaN NaN NaN NaN NaN NaN 117.12 1 120.56 120.06 121.06 3.4425 0 0 0 0.40746 1 28841 28841 0.69038 0 1 + 14413 26552 9241 9247 17640 17640 -0.06684793053545945 INRIYIFSA 9 Unmodified _INRIYIFSA_ 0 0 0 L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|88|2|sense;L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|157|3|sense;L1PA3_dup6642|chrX:81339893-81345906:-|1.448269466893641|0.0548265789696478|4.72|151.0|139|3|sense;L1PA3_dup512|chr1:169275509-169279839:-|1.048869413170849|0.1198277288768944|3.13|151.0|70|2|sense L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|88|2|sense L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|88|2|sense MSMS UPN48_class_I_Rep_2 6 548.8104858398438 2 548.811116 1095.60768 NaN NaN NaN NaN NaN NaN NaN 45.104 1 48.865 48.365 49.365 3.7617 0 0 0 0.38639 1 8671 8671 3.9444 0 1 14414 14269 9242 9248 17641 17641 0.06370022231271832 INTEDDDEDD 10 Unmodified _INTEDDDEDD_ 0 0 0 nc|ENSG00000118729|O14958-2|CASQ2;ENSG00000118729|ENST00000261448|CASQ2 nc|ENSG00000118729|O14958-2|CASQ2 nc|ENSG00000118729|O14958-2|CASQ2 MSMS UPN47_class_I_Rep_3 4 590.7562866210938 2 590.709844 1179.40514 NaN NaN NaN NaN NaN NaN NaN 22.984 1 26.334 25.834 26.834 3.3503 0 0 0 0.53105 1 2843 2843 1.3295 0.80477 1 14415 2261 9243 9249 17642 17642 -0.17739042213247558 INTHLLEQV 9 Unmodified _INTHLLEQV_ 0 0 0 L1MD2_dup3480|chr6:24964181-24965031:-|3.120918710348269|0.0092518611181365|8.4|151.0|4|1|sense L1MD2_dup3480|chr6:24964181-24965031:-|3.120918710348269|0.0092518611181365|8.4|151.0|4|1|sense L1MD2_dup3480|chr6:24964181-24965031:-|3.120918710348269|0.0092518611181365|8.4|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 533.7981567382812 2 533.798206 1065.58186 0.30151 0.00016094 -0.006197 -3.308E-06 0.29531 0.00015764 533.7980816179348 49.46 0.94459 52.807 52.39 53.335 3.3465 94 60 2 0 0 0 0.30034 1 10828 10828 13.906 0.86358 1 195470 14416 11992 9244 9250 17643 17643 0.051691279890064834 INTILARYY 9 Unmodified _INTILARYY_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS UPN48_class_I_Rep_1 5 563.8165893554688 2 563.816399 1125.61824 0.50285 0.00028351 0.33238 0.0001874 0.83523 0.00047092 563.8166696905457 55.797 1.3127 59.298 58.764 60.077 3.5014 284 95 4 0 0 0 0.21527 1 12131 12131 19.257 5.3509 1 3498700 + 14417 20696 9245 9251 17644 17644 0.060460048857066795 INVESLQLPP 10 Unmodified _INVESLQLPP_ 0 0 0 REV__ENSG00000088038|ENST00000221232|CNOT3 REV__ENSG00000088038|ENST00000221232|CNOT3 MSMS UPN46_class_I_Rep_3 1 555.3151245117188 2 555.313689 1108.61282 NaN NaN NaN NaN NaN NaN NaN 97.723 1 97.723 97.223 98.223 0 0 0 0 0.53105 1 23786 23786 1.4819 0 1 + 14418 17984 9246 9252 17645 17645 0.06286281303255237 INVFPKYV 8 Unmodified _INVFPKYV_ 0 0 0 REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|289|3|anti-sense REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|289|3|anti-sense MSMS UPN46_class_I_Rep_3 1 490.2488098144531 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 21.902 1 21.902 21.402 22.402 0 0 0 0 0.40625 1 2520 2520 2.3027 0.4585 1 + 14419 27819 9247 9253 17646 17646 0.06371849799563734 INVIHYTKKL 10 Unmodified _INVIHYTKKL_ 0 0 0 L1MC1_dup5853|chr7:30217603-30221109:+|1.814414193144391|0.2769317681819728|2.71|151.0|20|1|sense L1MC1_dup5853|chr7:30217603-30221109:+|1.814414193144391|0.2769317681819728|2.71|151.0|20|1|sense L1MC1_dup5853|chr7:30217603-30221109:+|1.814414193144391|0.2769317681819728|2.71|151.0|20|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 614.8746948242188 2 614.874248 1227.73394 0.42213 0.00025956 0.0030038 1.8469E-06 0.42513 0.0002614 614.8742009537392 108.64 0.64091 112.27 112.16 112.8 3.6321 194 76 3 0 0 0 0.52083 1 26299 26299 9.3831 0.63772 1 39696000 14420 11171 9248 9254 17647 17647 0.12918528736554435 INVKCKWAK 9 Unmodified _INVKCKWAK_ 0 0 0 L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|79|3|sense;L1PA5_dup9473|chr14:56228634-56234747:+|2.248301402833117|0.0719750817947556|4.97|151.0|23|1|sense L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|79|3|sense L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|79|3|sense MSMS UPN47_class_I_Rep_2 3 545.3168334960938 2 545.315512 1088.61647 NaN NaN NaN NaN NaN NaN NaN 84.471 1 87.894 87.394 88.394 3.4232 0 0 0 0.39518 1 21064 21064 1.8442 0 1 14421 14537 9249 9255 17648 17648 0.07570672596102668 INVKNYHDP 9 Unmodified _INVKNYHDP_ 0 0 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.2804565429688 2 550.28018 1098.54581 0.55024 0.00030279 -0.05536 -3.0463E-05 0.49488 0.00027232 550.2800583378954 53.245 0.65018 56.855 56.451 57.101 3.6098 84 41 3 0 0 0 0.46869 1 11141 11141 3.9444 0.3479 1 193160 + 14422 32518 9250 9256 17649 17649 0.0004767081213685742 INVKNYHDP 9 Unmodified _INVKNYHDP_ 0 0 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.279541015625 2 550.28018 1098.54581 0.27359 0.00015055 0.22185 0.00012208 0.49544 0.00027263 550.2802523858129 53.031 0.70972 56.614 56.443 57.153 3.5836 77 48 2 0 0 0 0.42249 1 11081 11081 6.7232 0.99131 1 292020 + 14423 32518 9250 9256 17650 17650 0.0004767081213685742 INVKNYHDP 9 Unmodified _INVKNYHDP_ 0 0 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 550.28018 1098.54581 0.50233 0.00027642 0.87159 0.00047962 1.3739 0.00075604 550.7828978558362 53.104 0.11507 56.43 56.344 56.459 3.3266 -0.22999 0.00091451 NaN 6.7232 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 29726 + 14424 32518 9250 9256 0.0004767081213685742 INVKNYHDP 9 Unmodified _INVKNYHDP_ 0 0 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|140|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 550.28018 1098.54581 0.50269 0.00027662 -0.033813 -1.8607E-05 0.46887 0.00025801 550.2800969427288 53.221 0.69106 56.741 56.43 57.121 3.5192 0.080571 -8.195E-05 NaN 6.7232 80 48 2 NaN NaN NaN NaN 0 NaN NaN 0 272220 + 14425 32518 9250 9256 0.0004767081213685742 INVKQFAKFV 10 Unmodified _INVKQFAKFV_ 0 0 0 ENSG00000161057|ENST00000292644|PSMC2;ENST00000460021.1_1_7:102994369-103002536:+|nuORF ENSG00000161057|ENST00000292644|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 MSMS UPN48_class_I_Rep_2 6 597.3583374023438 2 597.355691 1192.69683 NaN NaN NaN NaN NaN NaN NaN 90.928 1 94.683 94.183 95.183 3.7554 0 0 0 0.53105 1 21649 21649 1.4819 0 1 14426 3897 9251 9257 17651 17651 0.10818857190793096 INVKREKY 8 Unmodified _INVKREKY_ 0 0 0 REV__L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|59|3|sense REV__L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 525.3074340820312 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 48.643 1 48.643 48.143 49.143 0 0 0 0 0.4044 1 10153 10153 4.756 0.42677 1 + 14427 28606 9252 9258 17652 17652 0.08057138088520333 INVQKLFVF 9 Unmodified _INVQKLFVF_ 0 0 0 L1MB7_dup5119|chr3:195431747-195433048:-|5.423955884254816|0.0255288461819932|7.73|151.0|21|2|sense L1MB7_dup5119|chr3:195431747-195433048:-|5.423955884254816|0.0255288461819932|7.73|151.0|21|2|sense L1MB7_dup5119|chr3:195431747-195433048:-|5.423955884254816|0.0255288461819932|7.73|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 554.3327026367188 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 82.108 1 85.793 85.293 86.293 3.685 0 0 0 0.39428 1 19451 19451 2.0598 0.40713 1 14428 10845 9253 9259 17653 17653 0.09975783270760985 INVQLKIKK 9 Unmodified _INVQLKIKK_ 0 0 0 REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.3659057617188 2 542.366059 1082.71756 0.39869 0.00021623 0.6056 0.00032845 1.0043 0.00054469 542.3659853590816 108.13 0.36736 111.77 111.47 111.84 3.6313 85 31 4 0 0 0 0.46434 1 26085 26085 4.3292 0.38484 1 7718700 + 14429 24871 9254 9260 17654 17654 0.17951447570453638 INVQLKIKK 9 Unmodified _INVQLKIKK_ 0 0 0 REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 542.366059 1082.71756 0.48842 0.0002649 0.6181 0.00033524 1.1065 0.00060014 542.3664154802249 108.21 0.37146 111.75 111.7 112.07 3.5382 0.007361 -2.6621E-05 NaN 4.3292 85 37 3 NaN NaN NaN NaN 0 NaN NaN 0 22705000 + 14430 24871 9254 9260 0.17951447570453638 INVQLKIKK 9 Unmodified _INVQLKIKK_ 0 0 0 REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 542.366059 1082.71756 0.48221 0.00026153 1.1314 0.00061362 1.6136 0.00087515 542.367041069488 108.03 0.11688 111.7 111.59 111.71 3.6746 -0.037309 0.00053013 NaN 4.3292 33 10 4 NaN NaN NaN NaN 0 NaN NaN 0 14447000 + 14431 24871 9254 9260 0.17951447570453638 INVQLKIKK 9 Unmodified _INVQLKIKK_ 0 0 0 REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense REV__L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|7|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 542.366059 1082.71756 0.51707 0.00028044 1.6739 0.00090786 2.191 0.0011883 542.3677508562905 108.06 0.080879 111.74 111.67 111.75 3.6813 0.0032708 0.0011186 NaN 4.3292 25 7 5 NaN NaN NaN NaN 0 NaN NaN 0 11343000 + 14432 24871 9254 9260 0.17951447570453638 INVSSVGGRL 10 Unmodified _INVSSVGGRL_ 0 0 0 nc|ENSG00000073737|Q9BPW9-2|DHRS9;nc|ENSG00000073737|Q9BPW9-3|DHRS9;ENSG00000073737|ENST00000674881|DHRS9;nc|ENSG00000073737|Q9BPW9-4|DHRS9 nc|ENSG00000073737|Q9BPW9-2|DHRS9 nc|ENSG00000073737|Q9BPW9-2|DHRS9 MULTI-MSMS UPN48_class_I_Rep_2 6 501.2906188964844 2 501.290548 1000.56654 0.28817 0.00014446 0.21591 0.00010823 0.50408 0.00025269 501.2905334702732 76.915 2.3071 80.527 79.814 82.121 3.6116 397 246 2 0 0 0 0.55448 1 18229 18229 4.897 4.897 1 426230 14433 1120 9255 9261 17655 17655 0.06628261191815454 INVSVHQPP 9 Unmodified _INVSVHQPP_ 0 0 0 REV__ENST00000488992.1_1_3:134851743-134873211:+|nuORF REV__ENST00000488992.1_1_3:134851743-134873211:+|nuORF MSMS UPN47_class_I_Rep_2 3 495.7704772949219 2 495.771991 989.529429 NaN NaN NaN NaN NaN NaN NaN 50.665 1 54.003 53.503 54.503 3.3386 0 0 0 0.38916 1 11156 11156 3.2813 0 1 + 14434 19753 9256 9262 17656 17656 0.03424589646044751 INVVFEVLV 9 Unmodified _INVVFEVLV_ 0 0 0 L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|12|1|sense L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|12|1|sense L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 516.3114624023438 2 516.310418 1030.60628 NaN NaN NaN NaN NaN NaN NaN 97.433 1 101.21 100.71 101.71 3.779 0 0 0 0.39518 1 23152 23152 1.8442 0 1 14435 9203 9257 9263 17657 17657 0.09220388142512093 INVVFEVLV 9 Unmodified _INVVFEVLV_ 0 0 0 L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|12|1|sense L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|12|1|sense L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 516.31298828125 2 516.310418 1030.60628 NaN NaN NaN NaN NaN NaN NaN 96.935 1 100.84 100.34 101.34 3.9084 0 0 0 0.39518 1 22978 22978 1.8442 0 1 14436 9203 9257 9263 17658 17658 0.09220388142512093 INWFFVVSY 9 Unmodified _INWFFVVSY_ 0 0 0 L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|155|1|anti-sense L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|155|1|anti-sense L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|155|1|anti-sense MSMS UPN47_class_I_Rep_1 2 587.8006591796875 2 587.800217 1173.58588 NaN NaN NaN NaN NaN NaN NaN 65.555 1 68.911 68.411 69.411 3.3557 0 0 0 0.38478 1 15645 15645 4.3292 0 1 14437 9783 9258 9264 17659 17659 0.006032174827169001 INYKVFLPK 9 Unmodified _INYKVFLPK_ 0 0 0 L1MC5_dup11645|chr13:110657020-110658170:+|2.236355460982128|0.3494936283454092|2.68|151.0|35|3|sense L1MC5_dup11645|chr13:110657020-110658170:+|2.236355460982128|0.3494936283454092|2.68|151.0|35|3|sense L1MC5_dup11645|chr13:110657020-110658170:+|2.236355460982128|0.3494936283454092|2.68|151.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 561.340576171875 2 561.33951 1120.66447 NaN NaN NaN NaN NaN NaN NaN 79.095 1 82.737 82.237 83.237 3.6423 0 0 0 0.38639 1 18744 18744 3.9444 1.6417 1 14438 11659 9259 9265 17660 17660 0.10896069787804663 INYQKIAQY 9 Unmodified _INYQKIAQY_ 0 0 0 REV__L1ME1_dup1296|chr1:111689136-111689678:-|1.1067031627186918|0.0177647317308234|5.96|151.0|4|1|sense REV__L1ME1_dup1296|chr1:111689136-111689678:-|1.1067031627186918|0.0177647317308234|5.96|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.8050537109375 2 570.806031 1139.59751 0.36205 0.00020666 0.016487 9.4106E-06 0.37853 0.00021607 570.805979161262 56.214 0.80657 59.757 59.343 60.15 3.5427 124 69 2 0 0 0 0.46869 1 11890 11890 3.9444 0.66309 1 215440 + 14439 27595 9260 9266 17661 17661 0.0332941450603812 IPAATEKQL 9 Unmodified _IPAATEKQL_ 0 0 0 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 MULTI-MSMS UPN47_class_I_Rep_1 2 485.7814636230469 2 485.782025 969.549496 0.25771 0.00012519 -0.89342 -0.00043401 -0.63571 -0.00030882 485.7816804659545 107.8 0.18645 111.47 111.39 111.58 3.6724 13 12 2 0 0 0 0.41259 1 26423 26423 7.2892 1.0834 1 3182900 14440 4975 9261 9267 17662 17662 0.0635034058598194 IPAATEKQL 9 Unmodified _IPAATEKQL_ 0 0 0 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 485.782025 969.549496 0.13643 6.6276E-05 -0.98217 -0.00047712 -0.84574 -0.00041084 485.7813759325354 107.79 0.15203 111.42 111.36 111.51 3.6313 -0.027399 0.00016504 NaN 7.2892 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 8547900 14441 4975 9261 9267 0.0635034058598194 IPAATEKQL 9 Unmodified _IPAATEKQL_ 0 0 0 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 485.782025 969.549496 0.25018 0.00012153 -1.1118 -0.0005401 -0.86163 -0.00041856 485.78146904399745 107.77 0.09771 111.44 111.4 111.49 3.6783 -0.0051616 3.9093E-05 NaN 7.2892 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 7894900 14442 4975 9261 9267 0.0635034058598194 IPAATEKQL 9 Unmodified _IPAATEKQL_ 0 0 0 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 ENSG00000182890|ENST00000328078|GLUD2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 485.782025 969.549496 0.23225 0.00011282 -1.447 -0.00070295 -1.2148 -0.00059012 485.7812559930972 107.78 0.12962 111.46 111.4 111.53 3.6813 0.011348 -0.00028661 NaN 7.2892 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 9433900 14443 4975 9261 9267 0.0635034058598194 IPAKLGNVK 9 Unmodified _IPAKLGNVK_ 0 0 0 REV__L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|85|3|sense REV__L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|85|3|sense MSMS UPN47_class_I_Rep_1 2 470.3023986816406 2 470.302927 938.591301 NaN NaN NaN NaN NaN NaN NaN 62.37 1 65.738 65.238 66.238 3.3681 0 0 0 0.38639 1 14688 14688 3.9444 0 1 + 14444 28849 9262 9268 17663 17663 0.11954941065175717 IPALLLCLPL 10 Unmodified _IPALLLCLPL_ 0 0 0 ENSG00000155918|ENST00000367341|RAET1L ENSG00000155918|ENST00000367341|RAET1L ENSG00000155918|ENST00000367341|RAET1L MULTI-MSMS UPN48_class_I_Rep_1 5 533.3406372070312 2 533.340664 1064.66677 0.33781 0.00018017 -0.2519 -0.00013435 0.085906 4.5817E-05 533.340423960623 90.083 0.77294 93.708 93.285 94.058 3.6255 238 96 4 0 0 0 0.56478 1 21551 21551 0.45834 0 1 2020000 14445 3715 9263 9269 17664 17664 0.1370278220124419 IPALWQAIKR 10 Unmodified _IPALWQAIKR_ 0 0 0 AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|1|1|sense AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|1|1|sense AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 598.3694458007812 2 598.369133 1194.72371 NaN NaN NaN NaN NaN NaN NaN 106.82 1 106.82 106.32 107.32 0 0 0 0 0.53105 1 26052 26052 0.45834 0.057624 1 14446 134 9264 9270 17665 17665 0.13413965801964878 IPASLFVNKKP 11 Unmodified _IPASLFVNKKP_ 0 0 0 nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A nc|ENSG00000177853|Q6AHZ1-2|ZNF518A MSMS UPN47_class_I_Rep_3 4 404.79180908203125 3 405.248291 1212.72304 NaN NaN NaN NaN NaN NaN NaN 85.949 1 89.32 88.82 89.82 3.3716 0 0 0 0.38417 1 21540 21540 1.2148 0.51716 1 14447 4805 9265 9271 17666 17666 0.12519126362280986 IPAYIVSEDK 10 Unmodified _IPAYIVSEDK_ 0 0 0 L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|82|2|anti-sense L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|82|2|anti-sense L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_1 2 567.8103637695312 2 567.805697 1133.59684 NaN NaN NaN NaN NaN NaN NaN 64.925 1 68.28 67.78 68.78 3.3557 0 0 0 0.53105 1 15452 15452 5.7319 1.4026 1 14448 11148 9266 9272 17667 17667 0.03538575066318117 IPDLKLPS 8 Unmodified _IPDLKLPS_ 0 0 0 REV__ENST00000313871.8_1_X:1720532-1720865:+|nuORF REV__ENST00000313871.8_1_X:1720532-1720865:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 441.76806640625 2 441.768386 881.522219 0.1498 6.6177E-05 -0.32169 -0.00014211 -0.17189 -7.5938E-05 441.76810661522427 96.417 0.84752 100.32 99.933 100.78 3.9084 284 116 3 0 0 0 0.82752 1 22929 22929 4.756 0 1 2537100 + 14449 21713 9267 9273 17668 17668 0.07671857045602337 IPDLSVKL 8 Unmodified _IPDLSVKL_ 0 0 0 L1M4b_dup2143|chr9:33322218-33323472:+|4.031221749129388|0.1888331622304721|4.42|151.0|65|2|anti-sense L1M4b_dup2143|chr9:33322218-33323472:+|4.031221749129388|0.1888331622304721|4.42|151.0|65|2|anti-sense L1M4b_dup2143|chr9:33322218-33323472:+|4.031221749129388|0.1888331622304721|4.42|151.0|65|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 442.7757873535156 2 442.776211 883.537869 0.24423 0.00010814 0.30269 0.00013402 0.54692 0.00024216 442.7761370027964 56.481 0.52943 60.014 59.646 60.176 3.5333 64 44 2 0 0 0 0.82752 1 12129 12129 9.3474 0 1 140720 14450 8995 9268 9274 17669 17669 0.09144143562662066 IPEHPKKQKI 10 Unmodified _IPEHPKKQKI_ 0 0 0 ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346.11,USP42,chr7,+,I7.1,6135952,6139091|24|5.38|1|intron;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.5840759277344 3 406.583674 1216.72919 -0.1447 -5.8832E-05 1.0914 0.00044376 0.94674 0.00038493 406.5840186638016 105 0.060455 108.62 108.6 108.66 3.6247 12 8 2 0 0 0 0.56444 1 25299 25299 0.69767 0.07084 1 837560 14451 1784 9269 9275 17670 17670 0.12949644593800258 IPEHPKKQKI 10 Unmodified _IPEHPKKQKI_ 0 0 0 ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346.11,USP42,chr7,+,I7.1,6135952,6139091|24|5.38|1|intron;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 406.583674 1216.72919 0.08215 3.3401E-05 0.88323 0.00035911 0.96538 0.00039251 406.5840824970822 104.59 0.069839 108.29 108.27 108.34 3.6991 -0.16777 -0.00016239 NaN 0.69767 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1505400 14452 1784 9269 9275 0.12949644593800258 IPFGNNPIFR 10 Unmodified _IPFGNNPIFR_ 0 0 0 nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24 nc|ENSG00000116133|Q15392-2|DHCR24 nc|ENSG00000116133|Q15392-2|DHCR24 MULTI-MSMS UPN48_class_I_Rep_2 6 587.8213500976562 2 587.822015 1173.62948 0.53445 0.00031416 -0.37163 -0.00021845 0.16283 9.5713E-05 587.8217808360697 62.184 0.4724 65.658 65.357 65.829 3.4738 65 38 2 0 0 0 0.53004 2 13809 13809;13909 8.1555 2.4237 1 169070 14453 2163 9270 9276 17671;17672 17671 0.049608269798454785 IPFGNNPIFR 10 Unmodified _IPFGNNPIFR_ 0 0 0 nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24 nc|ENSG00000116133|Q15392-2|DHCR24 nc|ENSG00000116133|Q15392-2|DHCR24 MULTI-MSMS UPN48_class_I_Rep_3 7 587.8219604492188 2 587.822015 1173.62948 0.51315 0.00030164 -0.14665 -8.6204E-05 0.3665 0.00021544 587.822061019118 61.906 0.49766 65.416 65.253 65.751 3.5104 62 43 2 0 0 0 0.52083 5 13775 13700;13733;13753;13773;13775 9.3831 3.5147 1 107290 14454 2163 9270 9276 17673;17674;17675;17676;17677 17677 0.049608269798454785 IPFYVHFH 8 Unmodified _IPFYVHFH_ 0 0 0 REV__L1M4_dup4185|chr3:195419590-195420273:-|1.8993987521085869|0.0047412770101301|8.65|151.0|41|2|anti-sense REV__L1M4_dup4185|chr3:195419590-195420273:-|1.8993987521085869|0.0047412770101301|8.65|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_2 3 530.2886962890625 2 530.27417 1058.53379 NaN NaN NaN NaN NaN NaN NaN 25.548 1 29.031 28.531 29.531 3.483 0 0 0 0.40581 1 3563 3563 2.8892 0.58649 1 + 14455 24430 9271 9277 17678 17678 0.006860988595917661 IPGEVLNTRVR 11 Unmodified _IPGEVLNTRVR_ 0 0 0 ENST00000462675.1_1_3:75496401-75505839:-|nuORF ENST00000462675.1_1_3:75496401-75505839:-|nuORF ENST00000462675.1_1_3:75496401-75505839:-|nuORF MSMS UPN47_class_I_Rep_3 4 627.7968139648438 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 54.2 1 57.385 56.885 57.885 3.1856 0 0 0 0.38417 1 12287 12287 2.9952 1.5133 1 14456 6870 9272 9278 17679 17679 0.10891555100079131 IPGQINKRK 9 Unmodified _IPGQINKRK_ 0 0 0 MER34D_dup132|chr9:90891959-90892531:-|2.787657107025208|0.1004455894301983|4.79|151.0|40|3|anti-sense MER34D_dup132|chr9:90891959-90892531:-|2.787657107025208|0.1004455894301983|4.79|151.0|40|3|anti-sense MER34D_dup132|chr9:90891959-90892531:-|2.787657107025208|0.1004455894301983|4.79|151.0|40|3|anti-sense MSMS UPN47_class_I_Rep_2 3 527.3296508789062 2 527.330008 1052.64546 NaN NaN NaN NaN NaN NaN NaN 111 1 114.53 114.03 115.03 3.5271 0 0 0 0.4007 1 27023 27023 0.52476 0 1 14457 15925 9273 9279 17680 17680 0.12124533216751843 IPGTDSWTTS 10 Unmodified _IPGTDSWTTS_ 0 0 0 L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|14|1|sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|14|1|sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|14|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 533.2718505859375 2 532.748379 1063.4822 0.3947 0.00021028 -0.53403 -0.0002845 -0.13933 -7.4227E-05 532.7481190793084 49.184 0.44357 52.419 52.175 52.618 3.2345 41 27 2 0 0 0 0.84575 1 10768 10768 2.9952 0 1 79593 14458 9581 9274 9280 17681 17681 -0.04699734415612511 IPHSCDVIVY 10 Unmodified _IPHSCDVIVY_ 0 0 0 REV__L1MA1_dup548|chr3:4728451-4728739:-|1.0174605939286612|0.0286392127821302|5.15|151.0|20|3|anti-sense REV__L1MA1_dup548|chr3:4728451-4728739:-|1.0174605939286612|0.0286392127821302|5.15|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 573.286865234375 2 573.286617 1144.55868 NaN NaN NaN NaN NaN NaN NaN 63.127 1 66.297 65.797 66.797 3.1698 0 0 0 0.53105 1 15015 15015 10.074 0.6908 1 + 14459 24804 9275 9281 17682 17682 -0.007816341199941235 IPHYGYVH 8 Unmodified _IPHYGYVH_ 0 0 0 REV__L1ME3G_dup249|chr1:44450319-44450901:-|7.174468086658739|0.0053417659637452|10.39|151.0|5|1|sense REV__L1ME3G_dup249|chr1:44450319-44450901:-|7.174468086658739|0.0053417659637452|10.39|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 493.24957275390625 2 493.248152 984.481751 NaN NaN NaN NaN NaN NaN NaN 33.297 1 36.996 36.496 37.496 3.6983 0 0 0 0.40581 1 5845 5845 2.8892 0 1 + 14460 28188 9276 9282 17683 17683 -0.01111064554152108 IPIKISATHL 10 Unmodified _IPIKISATHL_ 0 0 0 L1MC1_dup6045|chr7:77136077-77137855:+|1.05412567519553|0.0159024167204193|6.05|151.0|43|2|sense L1MC1_dup6045|chr7:77136077-77137855:+|1.05412567519553|0.0159024167204193|6.05|151.0|43|2|sense L1MC1_dup6045|chr7:77136077-77137855:+|1.05412567519553|0.0159024167204193|6.05|151.0|43|2|sense MSMS UPN48_class_I_Rep_3 7 546.840576171875 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 92.708 1 96.586 96.086 97.086 3.8782 0 0 0 0.53105 1 21977 21977 1.6526 0 1 14461 11178 9277 9283 17684 17684 0.12811168299458586 IPILVGTRTHG 11 Unmodified _IPILVGTRTHG_ 0 0 0 REV__ENSG00000167701|ENST00000394955|GPT REV__ENSG00000167701|ENST00000394955|GPT MULTI-MSMS UPN47_class_I_Rep_1 2 582.34912109375 2 582.348397 1162.68224 -0.12694 -7.3924E-05 -0.14916 -8.6865E-05 -0.2761 -0.00016079 582.3482157539866 14.698 0.11073 18.173 18.112 18.223 3.475 19 11 2 0 0 0 0.67398 1 625 625 1.0715 0.5467 1 15476 + 14462 20232 9278 9284 17685 17685 0.10740785042662537 IPIMRWHH 8 Unmodified _IPIMRWHH_ 0 0 0 ENST00000517973.1_1_5:150400193-150407688:+|nuORF;ENSG00000211445|ENST00000388825|GPX3 ENST00000517973.1_1_5:150400193-150407688:+|nuORF ENST00000517973.1_1_5:150400193-150407688:+|nuORF MSMS UPN47_class_I_Rep_2 3 545.2924194335938 2 545.292371 1088.57019 NaN NaN NaN NaN NaN NaN NaN 25.938 1 29.432 28.932 29.932 3.4945 0 0 0 0.40746 1 3679 3679 0.69038 0 1 14463 5575 9279 9285 17686 17686 0.029446524846662214 IPISRYFFY 9 Unmodified _IPISRYFFY_ 0 0 0 REV__L1MC4a_dup921|chr2:68195181-68195947:-|2.1956883326504357|0.056007430399225|5.29|151.0|21|3|sense REV__L1MC4a_dup921|chr2:68195181-68195947:-|2.1956883326504357|0.056007430399225|5.29|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 603.3190307617188 2 603.321317 1204.62808 NaN NaN NaN NaN NaN NaN NaN 83.053 1 83.053 82.553 83.553 0 0 0 0 0.39518 1 19705 19705 1.8442 0.19162 1 + 14464 27034 9280 9286 17687 17687 0.03395192891093757 IPKFNNKVY 9 Unmodified _IPKFNNKVY_ 0 0 0 L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|9|1|sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|9|1|sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 561.3156127929688 2 561.818941 1121.62333 0.42668 0.00023971 -4.1309 -0.0023208 -3.7042 -0.0020811 561.8169839762137 95.259 0.034439 99.161 99.151 99.185 3.9016 5 4 2 0 0 0 0.12235 1 22582 22582 2.0598 0.21551 1 68882 14465 11725 9281 9287 17688 17688 0.06738308748322197 IPKIVNLIKKR 11 Unmodified _IPKIVNLIKKR_ 0 0 0 REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|30|1|sense REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|30|1|sense MSMS UPN47_class_I_Rep_2 3 441.29742431640625 3 441.306252 1320.89693 NaN NaN NaN NaN NaN NaN NaN 84.619 1 88.042 87.542 88.542 3.4232 0 0 0 0.38417 1 21096 21096 0.094841 0 1 + 14466 25320 9282 9288 17689 17689 0.24931331858374506 IPKKYLAL 8 Unmodified _IPKKYLAL_ 0 0 0 LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|3|1|sense LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|3|1|sense LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.30975341796875 2 473.310221 944.605889 -0.13486 -6.383E-05 -0.15923 -7.5367E-05 -0.29409 -0.0001392 473.31000903989184 45.025 0.69177 48.381 48.09 48.782 3.3555 53 40 2 0 0 0 0.82752 1 9405 9405 2.3027 0 1 54065 14467 15690 9283 9289 17690 17690 0.13137013213292903 IPKVTTKL 8 Unmodified _IPKVTTKL_ 0 0 0 L1PA5_dup1463|chr2:190224336-190226313:+|1.0827719986038231|0.2363139317656401|2.2|151.0|31|2|sense L1PA5_dup1463|chr2:190224336-190226313:+|1.0827719986038231|0.2363139317656401|2.2|151.0|31|2|sense L1PA5_dup1463|chr2:190224336-190226313:+|1.0827719986038231|0.2363139317656401|2.2|151.0|31|2|sense MSMS UPN47_class_I_Rep_1 2 450.29913330078125 2 450.299853 898.585153 NaN NaN NaN NaN NaN NaN NaN 35.424 1 39.1 38.6 39.6 3.6762 0 0 0 0.40625 1 6494 6494 2.3027 0 1 14468 14428 9284 9290 17691 17691 0.13180422833636385 IPLKNKGGI 9 Unmodified _IPLKNKGGI_ 0 0 0 L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|23|2|sense L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|23|2|sense L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|23|2|sense MSMS UPN47_class_I_Rep_1 2 470.302490234375 2 470.302927 938.591301 NaN NaN NaN NaN NaN NaN NaN 62.023 1 65.392 64.892 65.892 3.3681 0 0 0 0.38639 1 14583 14583 3.9444 0.94915 1 14469 13089 9285 9291 17692 17692 0.11954941065175717 IPLLSRTLCR 10 Unmodified _IPLLSRTLCR_ 0 0 0 ENST00000599232.1_1_19:58904459-58904744:+|nuORF ENST00000599232.1_1_19:58904459-58904744:+|nuORF ENST00000599232.1_1_19:58904459-58904744:+|nuORF MSMS UPN48_class_I_Rep_1 5 586.3502807617188 2 586.352625 1170.6907 NaN NaN NaN NaN NaN NaN NaN 67.726 1 71.177 70.677 71.677 3.4517 0 0 0 0.53105 1 15588 15588 2.4985 0.19575 1 14470 7656 9286 9292 17693 17693 0.11218015687609295 IPLPHCIVV 9 Unmodified _IPLPHCIVV_ 0 0 0 L1ME3A_dup6867|chr7:77752642-77754011:-|1.193166496839302|0.0381682932388087|4.97|150.0|79|2|anti-sense L1ME3A_dup6867|chr7:77752642-77754011:-|1.193166496839302|0.0381682932388087|4.97|150.0|79|2|anti-sense L1ME3A_dup6867|chr7:77752642-77754011:-|1.193166496839302|0.0381682932388087|4.97|150.0|79|2|anti-sense MSMS UPN47_class_I_Rep_2 3 495.795654296875 2 495.793881 989.573209 NaN NaN NaN NaN NaN NaN NaN 89.163 1 92.615 92.115 93.115 3.4525 0 0 0 0.40038 1 22156 22156 0.6015 0.6015 1 14471 12683 9287 9293 17694 17694 0.0780048281881136 IPLRWGPTAL 10 Unmodified _IPLRWGPTAL_ 0 0 0 ENST00000374024.3_1_1:27721873-27722296:+|nuORF ENST00000374024.3_1_1:27721873-27722296:+|nuORF ENST00000374024.3_1_1:27721873-27722296:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 562.3348388671875 2 562.334759 1122.65496 0.49269 0.00027706 -0.45019 -0.00025316 0.042498 2.3898E-05 562.3343212586504 109.22 0.75874 112.89 112.81 113.57 3.6715 192 102 2 0 0 0 0.54466 1 26062 26062 6.2058 1.8765 1 3580200 14472 6425 9288 9294 17695 17695 0.09854301502264207 IPLSKIKTL 9 Unmodified _IPLSKIKTL_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS UPN47_class_I_Rep_1 2 506.8416748046875 2 506.841885 1011.66922 -0.15544 -7.8783E-05 -0.081031 -4.107E-05 -0.23647 -0.00011985 506.84176951245166 41.816 0.6883 45.495 45.266 45.955 3.6792 98 46 3 0 0 0 0.24411 1 8443 8443 17.443 1.2935 1 134670 14473 1188 9289 9295 17696 17696 0.16384953930560187 IPLSKIKTL 9 Unmodified _IPLSKIKTL_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS UPN47_class_I_Rep_2 3 506.84228515625 2 506.841885 1011.66922 -0.19408 -9.837E-05 0.063312 3.2089E-05 -0.13077 -6.628E-05 506.8418904863552 42.283 0.84913 45.644 45.38 46.229 3.3611 102 63 2 0 0 0 0.36258 2 8595 8595;8641 10.151 1.4052 1 147150 14474 1188 9289 9295 17697;17698 17697 0.16384953930560187 IPLSKIKTL 9 Unmodified _IPLSKIKTL_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS UPN47_class_I_Rep_3 4 506.8417663574219 2 506.841885 1011.66922 -0.095778 -4.8544E-05 -0.16959 -8.5958E-05 -0.26537 -0.0001345 506.84171101128203 42.631 0.86811 45.87 45.414 46.282 3.2394 94 59 2 0 0 0 0.12795 2 8767 8689;8767 28.495 5.7582 1 170880 14475 1188 9289 9295 17699;17700 17700 0.16384953930560187 IPLWLGLVQML 11 Unmodified _IPLWLGLVQML_ 0 0 0 L1MA2_dup1395|chr3:138492093-138493769:-|1.1702511425535174|0.1138417533008598|3.36|151.0|103|3|anti-sense L1MA2_dup1395|chr3:138492093-138493769:-|1.1702511425535174|0.1138417533008598|3.36|151.0|103|3|anti-sense L1MA2_dup1395|chr3:138492093-138493769:-|1.1702511425535174|0.1138417533008598|3.36|151.0|103|3|anti-sense MSMS UPN47_class_I_Rep_1 2 641.8812255859375 2 641.883227 1281.7519 NaN NaN NaN NaN NaN NaN NaN 87.002 1 90.639 90.139 91.139 3.6372 0 0 0 0.38417 1 21734 21734 1.4819 0 1 14476 9332 9290 9296 17701 17701 0.12229527667045659 IPMCCRRDLV 10 Unmodified _IPMCCRRDLV_ 0 0 0 THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|13|3|sense;THE1B_dup12393|chr9:77895669-77896032:+|1.3503933020492218|0.011511189542035|6.87|151.0|11|3|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 603.30078125 2 603.301221 1204.58789 -0.041039 -2.4759E-05 -0.41329 -0.00024934 -0.45433 -0.0002741 603.3009009910401 30.144 0.60438 33.889 33.651 34.256 3.7449 68 43 2 0 0 0 0.54822 4 4888 4849;4888;4928;4951 5.7319 1.3426 1 152060 14477 32878 9291 9297 17702;17703;17704;17705 17703 -0.006221363669965285 IPMCCRRDLV 10 Unmodified _IPMCCRRDLV_ 0 0 0 THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|13|3|sense;THE1B_dup12393|chr9:77895669-77896032:+|1.3503933020492218|0.011511189542035|6.87|151.0|11|3|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 603.30029296875 2 603.301221 1204.58789 0.046204 2.7875E-05 -0.61913 -0.00037352 -0.57293 -0.00034565 603.3008115698499 30.495 0.68114 33.977 33.499 34.18 3.4821 92 53 2 0 0 0 0.56118 1 5044 5044 2.9952 0.26005 1 140730 14478 32878 9291 9297 17706 17706 -0.006221363669965285 IPMCCRRDLV 10 Unmodified _IPMCCRRDLV_ 0 0 0 THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|13|3|sense;THE1B_dup12393|chr9:77895669-77896032:+|1.3503933020492218|0.011511189542035|6.87|151.0|11|3|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 603.30126953125 2 603.301221 1204.58789 -0.17111 -0.00010323 -0.22507 -0.00013578 -0.39617 -0.00023901 603.3010448974942 30.543 1.0019 33.854 33.622 34.624 3.3116 116 79 2 0 0 0 0.56118 2 5038 5020;5038 2.9952 0.90923 1 160110 14479 32878 9291 9297 17707;17708 17708 -0.006221363669965285 IPMCCRRDLV 10 Unmodified _IPMCCRRDLV_ 0 0 0 THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|13|3|sense;THE1B_dup12393|chr9:77895669-77896032:+|1.3503933020492218|0.011511189542035|6.87|151.0|11|3|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense THE1B_dup5891|chr4:102636851-102637215:+|1.3001955285114886|0.2552734601230264|2.35|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.3010864257812 2 603.301221 1204.58789 0.48484 0.00029251 -0.87832 -0.00052989 -0.39348 -0.00023739 603.3005479571477 30.763 0.56035 34.305 34.002 34.563 3.542 102 53 2 0 0 0 0.54822 3 4392 4392;4465;4488 5.7319 1.7875 1 153250 14480 32878 9291 9297 17709;17710;17711 17709 -0.006221363669965285 IPMCIMPY 8 Unmodified _IPMCIMPY_ 0 0 0 REV__L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|63|3|anti-sense REV__L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_1 5 484.2267761230469 2 484.226128 966.437703 NaN NaN NaN NaN NaN NaN NaN 16.306 1 19.828 19.328 20.328 3.5217 0 0 0 0.40738 1 780 780 0.79363 0 1 + 14481 24628 9292 9298 17712 17712 -0.04685876358655605 IPMCIMPY 8 Unmodified _IPMCIMPY_ 0 0 0 REV__L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|63|3|anti-sense REV__L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_2 6 484.22650146484375 2 484.226128 966.437703 NaN NaN NaN NaN NaN NaN NaN 16.033 1 19.686 19.186 20.186 3.6527 0 0 0 0.40738 1 741 741 0.79363 0 1 + 14482 24628 9292 9298 17713 17713 -0.04685876358655605 IPMCIMPY 8 Unmodified _IPMCIMPY_ 0 0 0 REV__L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|63|3|anti-sense REV__L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2270812988281 2 484.226128 966.437703 NaN NaN NaN NaN NaN NaN NaN 16.256 1 19.805 19.305 20.305 3.5486 0 0 0 0.40581 1 759 759 2.8892 0 1 + 14483 24628 9292 9298 17714 17714 -0.04685876358655605 IPMMPRHV 8 Unmodified _IPMMPRHV_ 0 0 0 ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|3|intron;ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|2|intron;ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|1|intron;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;RAD54L2|p.R1192Lfs*35|1|0.1|ENSG00000164080|chr3:51662591-51662591|G/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2 ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|3|intron ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|3|intron MSMS UPN48_class_I_Rep_1 5 490.7612609863281 2 490.762058 979.509562 NaN NaN NaN NaN NaN NaN NaN 32.081 1 35.608 35.108 36.108 3.5266 0 0 0 0.40738 1 4832 4832 0.79363 0 1 14484 4077 9293 9299 17715 17715 0.018987991100743784 IPMQLLPLKSL 11 Unmodified _IPMQLLPLKSL_ 0 0 0 REV__MER21C_dup3980|chr13:40928784-40929626:+|1.8233371321005971|0.0424156745963547|5.43|151.0|35|1|anti-sense REV__MER21C_dup3980|chr13:40928784-40929626:+|1.8233371321005971|0.0424156745963547|5.43|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 626.8892822265625 2 626.888509 1251.76247 NaN NaN NaN NaN NaN NaN NaN 104.01 1 107.63 107.13 108.13 3.6209 0 0 0 0.38417 1 25068 25068 5.2969 0 1 + 14485 31240 9294 9300 17716 17716 0.1466551032146981 IPMSSTILI 9 Unmodified _IPMSSTILI_ 0 0 0 L1MA3_dup7703|chr15:44352935-44354077:+|3.2457782486897115|0.082224483993389|5.3|151.0|78|3|anti-sense L1MA3_dup7703|chr15:44352935-44354077:+|3.2457782486897115|0.082224483993389|5.3|151.0|78|3|anti-sense L1MA3_dup7703|chr15:44352935-44354077:+|3.2457782486897115|0.082224483993389|5.3|151.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.78271484375 2 487.783179 973.551804 0.33433 0.00016308 -0.26454 -0.00012904 0.069791 3.4043E-05 487.782979427409 81.905 0.44141 85.289 85.074 85.516 3.3839 92 51 2 0 0 0 0.26948 1 20459 20459 15.847 2.3393 1 166640 14486 9623 9295 9301 17717 17717 0.06397052999466268 IPNALVRIQLL 11 Unmodified _IPNALVRIQLL_ 0 0 0 REV__MER21B_dup486|chr3:23231478-23232313:-|1.4218007600760396|0.0123969787683742|6.84|151.0|54|3|anti-sense REV__MER21B_dup486|chr3:23231478-23232313:-|1.4218007600760396|0.0123969787683742|6.84|151.0|54|3|anti-sense MSMS UPN48_class_I_Rep_2 6 417.264404296875 3 417.271207 1248.79179 NaN NaN NaN NaN NaN NaN NaN 107.64 1 111.32 110.82 111.82 3.6783 0 0 0 0.38417 1 25449 25449 2.8433 0.21205 1 + 14487 31212 9296 9302 17718 17718 0.17734790661984334 IPNEHQRRN 9 Unmodified _IPNEHQRRN_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|114|3|sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|114|3|sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|114|3|sense MSMS UPN47_class_I_Rep_2 3 582.3541259765625 2 582.305052 1162.59555 NaN NaN NaN NaN NaN NaN NaN 102.07 1 105.59 105.09 106.09 3.5151 0 0 0 0.39428 1 24871 24871 2.0598 0.21551 1 14488 14842 9297 9303 17719 17719 0.020757985407954038 IPNEIIHAL 9 Unmodified _IPNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS UPN47_class_I_Rep_1 2 510.2973937988281 2 510.297842 1018.58113 0.22637 0.00011552 -0.2395 -0.00012221 -0.013123 -6.6964E-06 510.2975599680411 57.065 0.8925 60.522 60.223 61.116 3.4572 149 81 3 0 0 0 0.028995 5 13041 12999;13041;13078;13112;13151 57.722 16.556 1 378070 14489 1445 9298 9304 17720;17721;17722;17723;17724 17721 0.07258333339939327 IPNEIIHAL 9 Unmodified _IPNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS UPN47_class_I_Rep_2 3 510.29766845703125 2 510.297842 1018.58113 0.20948 0.0001069 -0.099877 -5.0967E-05 0.10961 5.5931E-05 510.297644370954 57.242 0.77519 60.534 60.282 61.057 3.2912 140 67 3 0 0 0 0.038999 5 13168 13124;13168;13207;13246;13284 53.404 16.429 1 369690 14490 1445 9298 9304 17725;17726;17727;17728;17729 17726 0.07258333339939327 IPNEIIHAL 9 Unmodified _IPNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS UPN47_class_I_Rep_3 4 510.2977600097656 2 510.297842 1018.58113 0.18518 9.4496E-05 0.023697 1.2093E-05 0.20888 0.00010659 510.2977195478985 57.477 0.81111 60.645 60.293 61.105 3.1681 161 69 3 0 0 0 0.0094161 4 13265 13265;13304;13340;13383 70.332 26.474 1 381710 14491 1445 9298 9304 17730;17731;17732;17733 17730 0.07258333339939327 IPNFTRQS 8 Unmodified _IPNFTRQS_ 0 0 0 L1ME1_dup8609|chr4:139132325-139132841:-|1.2631663342433932|0.4247629872765974|1.57|151.0|28|2|anti-sense L1ME1_dup8609|chr4:139132325-139132841:-|1.2631663342433932|0.4247629872765974|1.57|151.0|28|2|anti-sense L1ME1_dup8609|chr4:139132325-139132841:-|1.2631663342433932|0.4247629872765974|1.57|151.0|28|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 481.75634765625 2 481.756341 961.498129 0.099653 4.8008E-05 0.026483 1.2758E-05 0.12614 6.0767E-05 481.7562832910331 51.653 0.69871 55.263 55.003 55.702 3.6105 116 72 2 0 0 0 0.82752 1 10586 10586 7.9102 0.62092 1 627910 14492 12454 9299 9305 17734 17734 0.01584016611957395 IPNNPKQKN 9 Unmodified _IPNNPKQKN_ 0 0 0 REV__L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|4|1|sense REV__L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 526.7962036132812 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 21.043 1 24.71 24.21 25.21 3.6667 0 0 0 0.39518 1 1908 1908 1.8442 0.19162 1 + 14493 29234 9300 9306 17735 17735 0.05371663566097595 IPPAKIIIP 9 Unmodified _IPPAKIIIP_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS UPN47_class_I_Rep_2 3 481.3368835449219 2 481.325871 960.637189 NaN NaN NaN NaN NaN NaN NaN 81.427 1 84.811 84.311 85.311 3.3839 0 0 0 0.40038 1 20279 20279 0.6015 0.6015 1 14494 5624 9301 9307 17736 17736 0.15529586247419047 IPPAKIIIP 9 Unmodified _IPPAKIIIP_ 0 0 0 ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C ENSG00000214866|ENST00000399143|DCDC2C MSMS UPN48_class_I_Rep_3 7 481.3370361328125 2 481.325871 960.637189 NaN NaN NaN NaN NaN NaN NaN 81.422 1 85.107 84.607 85.607 3.685 0 0 0 0.40038 1 19274 19274 0.6015 0.6015 1 14495 5624 9301 9307 17737 17737 0.15529586247419047 IPPMLIIF 8 Unmodified _IPPMLIIF_ 0 0 0 ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1 ENSG00000179055|ENST00000641530|OR13D1 ENSG00000179055|ENST00000641530|OR13D1 MULTI-MSMS UPN46_class_I_Rep_3 1 472.287841796875 2 472.2879 942.561247 0.24533 0.00011586 0.059137 2.793E-05 0.30446 0.00014379 472.2878051062128 92.212 0.15991 92.212 92.08 92.24 0 18 16 2 0 0 0 0.82752 1 22284 22284 0 0 1 122890 14496 4845 9302 9308 17738 17738 0.08766866075654889 IPPYSCKDGH 10 Unmodified _IPPYSCKDGH_ 0 0 0 L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|195|3|sense L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|195|3|sense L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|195|3|sense MSMS UPN47_class_I_Rep_3 4 558.7596435546875 2 558.760766 1115.50698 NaN NaN NaN NaN NaN NaN NaN 39.784 1 43.021 42.521 43.521 3.2372 0 0 0 0.53105 1 7899 7899 1.3295 0.13619 1 14497 15147 9303 9309 17739 17739 -0.04615377813888699 IPQAKLSPQQ 10 Unmodified _IPQAKLSPQQ_ 0 0 0 ENSG00000111291|ENST00000228887|GPRC5D ENSG00000111291|ENST00000228887|GPRC5D ENSG00000111291|ENST00000228887|GPRC5D MSMS UPN48_class_I_Rep_3 7 555.31982421875 2 555.319306 1108.62406 NaN NaN NaN NaN NaN NaN NaN 95.313 1 99.221 98.721 99.721 3.9084 0 0 0 0.53105 1 22593 22593 1.4819 0 1 14498 1967 9304 9310 17740 17740 0.07409103397367289 IPQFNKLNK 9 Unmodified _IPQFNKLNK_ 0 0 0 REV__MLT1A0-int_dup833|chr15:72564049-72564633:-|1.0263080708079055|0.0973746835054293|3.4|151.0|25|3|sense REV__MLT1A0-int_dup833|chr15:72564049-72564633:-|1.0263080708079055|0.0973746835054293|3.4|151.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 551.3245239257812 2 551.324391 1100.63423 0.41903 0.00023102 -0.3861 -0.00021286 0.03293 1.8155E-05 551.3240501750043 62.784 0.77387 66.04 65.764 66.537 3.2558 65 50 2 0 0 0 0.42249 1 14853 14853 6.7232 0 1 137290 + 14499 31609 9305 9311 17741 17741 0.08793711122598324 IPREPVVF 8 Unmodified _IPREPVVF_ 0 0 0 ENST00000378892.5_1_9:34635320-34635566:-|nuORF ENST00000378892.5_1_9:34635320-34635566:-|nuORF ENST00000378892.5_1_9:34635320-34635566:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.7826843261719 2 478.781828 955.549102 0.27299 0.0001307 -0.53657 -0.0002569 -0.26358 -0.0001262 478.7814447684091 67.511 0.49957 71.019 70.901 71.4 3.5077 65 45 2 0 0 0 0.82752 2 15405 15405;15437 12.532 4.6214 1 120840 14500 6475 9306 9312 17742;17743 17742 0.0695496565680287 IPRMQQWKR 9 Unmodified _IPRMQQWKR_ 0 0 0 REV__ENSG00000145476|ENST00000378802|CYP4V2 REV__ENSG00000145476|ENST00000378802|CYP4V2 MSMS UPN48_class_I_Rep_2 6 621.8464965820312 2 621.848042 1241.68153 NaN NaN NaN NaN NaN NaN NaN 75.296 1 78.886 78.386 79.386 3.59 0 0 0 0.4007 1 17752 17752 0.52476 0.066424 1 + 14501 19514 9307 9313 17744 17744 0.0703566712193151 IPRQSLRLVR 10 Unmodified _IPRQSLRLVR_ 0 0 0 ENSG00000136573|ENST00000259089|BLK ENSG00000136573|ENST00000259089|BLK ENSG00000136573|ENST00000259089|BLK MSMS UPN48_class_I_Rep_2 6 413.2662048339844 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 84.821 1 88.515 88.015 89.015 3.6937 0 0 0 0.53105 1 20180 20180 0.15932 0 1 14502 2978 9308 9314 17745 17745 0.16895557953512252 IPRSGTAGVY 10 Unmodified _IPRSGTAGVY_ 0 0 0 L1MB3_dup6200|chr6:156893325-156894501:+|1.006326178034013|0.0261645742940269|5.27|151.0|71|3|anti-sense L1MB3_dup6200|chr6:156893325-156894501:+|1.006326178034013|0.0261645742940269|5.27|151.0|71|3|anti-sense L1MB3_dup6200|chr6:156893325-156894501:+|1.006326178034013|0.0261645742940269|5.27|151.0|71|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.77691650390625 2 510.777274 1019.53999 -0.029507 -1.5072E-05 -0.077664 -3.9669E-05 -0.10717 -5.474E-05 510.7771267810229 46.683 0.72387 50.035 49.71 50.434 3.3515 91 53 3 0 0 0 0.55148 1 9876 9876 5.2969 0.066215 1 155860 14503 10437 9309 9315 17746 17746 0.031005723004682295 IPRSWKRDKRF 11 Unmodified _IPRSWKRDKRF_ 0 0 0 REV__HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|100|3|sense REV__HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|100|3|sense MSMS UPN46_class_I_Rep_3 1 496.9577941894531 3 496.956393 1487.84735 NaN NaN NaN NaN NaN NaN NaN 74.68 1 74.68 74.18 75.18 0 0 0 0 0.38417 1 17333 17333 0.50596 0.36606 1 + 14504 23622 9310 9316 17747 17747 0.1229401690229679 IPSAKRER 8 Unmodified _IPSAKRER_ 0 0 0 nc|ENSG00000293473|B2RD01|CENPBD1P nc|ENSG00000293473|B2RD01|CENPBD1P nc|ENSG00000293473|B2RD01|CENPBD1P MULTI-MSMS UPN47_class_I_Rep_2 3 478.7856750488281 2 478.785433 955.556313 0.24704 0.00011828 -0.21914 -0.00010492 0.027897 1.3357E-05 478.7852967567092 83.329 0.62408 86.741 86.393 87.017 3.4116 130 77 2 0 0 0 0.82752 1 20712 20712 4.756 0.42677 1 171860 14505 16862 9311 9317 17748 17748 0.07675698257230579 IPSALINKTKY 11 Unmodified _IPSALINKTKY_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A REV__ENSG00000132915|ENST00000255266|PDE6A MULTI-MSMS UPN47_class_I_Rep_2 3 624.3720703125 2 624.371538 1246.72852 0.63453 0.00039619 1.0772 0.0006726 1.7118 0.0010688 624.3720097662391 98.776 0.26662 102.27 102.05 102.32 3.4897 61 38 2 0 0 0 0.65559 2 24188 24188;24216 2.7352 1.4057 1 662490 + 14506 19039 9312 9318 17749;17750 17749 0.11502805154077578 IPSALINKTKY 11 Unmodified _IPSALINKTKY_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A REV__ENSG00000132915|ENST00000255266|PDE6A MULTI-MSMS UPN48_class_I_Rep_2 6 624.372314453125 2 624.371538 1246.72852 0.49406 0.00030848 0.56417 0.00035225 1.0582 0.00066073 624.3717595601657 98.376 0.66378 102.15 101.87 102.53 3.7707 168 94 2 0 0 0 0.65559 1 23371 23371 2.7352 2.7352 1 4608200 + 14507 19039 9312 9318 17751 17751 0.11502805154077578 IPSALINKTKY 11 Unmodified _IPSALINKTKY_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A REV__ENSG00000132915|ENST00000255266|PDE6A MULTI-MSMS UPN48_class_I_Rep_3 7 624.3776245117188 2 624.371538 1246.72852 0.60343 0.00037676 0.24612 0.00015367 0.84955 0.00053043 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.65559 1 21849 21849 2.7352 0.23671 1 1749400 + 14508 19039 9312 9318 17752 17752 0.11502805154077578 IPSALINKTKY 11 Unmodified _IPSALINKTKY_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A REV__ENSG00000132915|ENST00000255266|PDE6A MULTI-MSMS UPN48_class_I_Rep_3 7 624.372314453125 2 624.371538 1246.72852 0.59493 0.00037146 0.74024 0.00046219 1.3352 0.00083365 624.3718323106261 98.466 0.95261 102.37 102.1 103.05 3.9022 192 133 2 0 0 0 0.65559 2 23329 23329;23385 2.7352 2.7352 1 3104200 + 14509 19039 9312 9318 17753;17754 17753 0.11502805154077578 IPSIFNTPEP 10 Unmodified _IPSIFNTPEP_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MULTI-MSMS UPN47_class_I_Rep_3 4 557.7926635742188 2 557.792589 1113.57063 0.48641 0.00027132 0.24196 0.00013497 0.72837 0.00040628 557.7926133286683 53.303 0.58828 56.498 56.171 56.759 3.1948 46 30 2 0 0 0 0.54822 1 12058 12058 5.7319 2.1354 1 82087 14510 2076 9313 9319 17755 17755 0.018383058948302278 IPSKQKPIVSR 11 Unmodified _IPSKQKPIVSR_ 0 0 0 L1MA4A_dup956|chr2:240489473-240492018:-|6.636642908131902|0.1780889387464883|5.22|151.0|12|1|sense L1MA4A_dup956|chr2:240489473-240492018:-|6.636642908131902|0.1780889387464883|5.22|151.0|12|1|sense L1MA4A_dup956|chr2:240489473-240492018:-|6.636642908131902|0.1780889387464883|5.22|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 626.8897094726562 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 103.94 1 107.63 107.13 108.13 3.6991 0 0 0 0.38417 1 24593 24593 2.9952 0.26005 1 14511 9863 9314 9320 17756 17756 0.1504931613953886 IPSLFRVFFL 10 Unmodified _IPSLFRVFFL_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|192|2|anti-sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|192|2|anti-sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|192|2|anti-sense MSMS UPN47_class_I_Rep_3 4 619.8696899414062 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.664 1 90.044 89.544 90.544 3.3801 0 0 0 0.53105 1 21721 21721 1.6526 0 1 14512 15459 9315 9321 17757 17757 0.11296331713219843 IPTLDCFYHP 10 Unmodified _IPTLDCFYHP_ 0 0 0 REV__ENSG00000170929|ENST00000641627|OR1M1 REV__ENSG00000170929|ENST00000641627|OR1M1 MSMS UPN47_class_I_Rep_1 2 603.2860107421875 2 603.286617 1204.55868 NaN NaN NaN NaN NaN NaN NaN 18.841 1 22.422 21.922 22.922 3.5806 0 0 0 0.53105 1 1643 1643 1.8442 0.36234 1 + 14513 20390 9316 9322 17758 17758 -0.03541634119983428 IPVALITQHW 10 Unmodified _IPVALITQHW_ 0 0 0 REV__Charlie1_dup978|chr8:108224812-108225978:+|2.313596283916575|0.1060085495857573|4.45|151.0|1|1|sense REV__Charlie1_dup978|chr8:108224812-108225978:+|2.313596283916575|0.1060085495857573|4.45|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 589.3425903320312 2 589.340041 1176.66553 NaN NaN NaN NaN NaN NaN NaN 101.13 1 101.13 100.63 101.63 0 0 0 0 0.53105 1 24671 24671 0.35063 0.35063 1 + 14514 17276 9317 9323 17759 17759 0.0842628415668969 IPVHKAHQ 8 Unmodified _IPVHKAHQ_ 0 0 0 HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|73|3|sense;HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|78|2|sense;HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|91|2|sense;HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|125|3|sense;HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|32|1|sense;HERVL-int_dup373|chr3:17591266-17593200:+|2.843895892111384|0.0234998968765916|6.92|151.0|9|1|sense;ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|21|1|sense;HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|29|3|sense;HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|57|2|sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|73|3|sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|73|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 465.2701110839844 2 465.269419 928.524284 -0.012606 -5.8653E-06 -1.2378 -0.00057593 -1.2505 -0.0005818 465.27037302146215 99.894 0.56068 103.34 103.11 103.67 3.4483 180 71 4 0 0 0 0.82752 1 24744 24744 0.79363 0 1 1143700 14515 7771 9318 9324 17760 17760 0.05716330574080075 IPVLVVQAQR 10 Unmodified _IPVLVVQAQR_ 0 0 0 ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENST00000527146.1_2_11:308871-309162:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 561.8533935546875 2 561.853316 1121.69208 0.4475 0.00025143 -0.058429 -3.2829E-05 0.38907 0.0002186 561.8531595959207 50.124 0.79247 53.649 53.306 54.099 3.5246 118 50 3 0 0 0 0.036973 2 10167 10121;10167 96.111 63.325 1 566570 14516 5091 9319 9325 17761;17762 17762 0.13609973048028223 IPVLVVQAQR 10 Unmodified _IPVLVVQAQR_ 0 0 0 ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENST00000527146.1_2_11:308871-309162:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 561.8530883789062 2 561.853316 1121.69208 0.45096 0.00025337 -0.12866 -7.2285E-05 0.32231 0.00018109 561.8531615682047 49.973 0.79483 53.667 53.305 54.1 3.6946 120 50 3 0 0 0 0.21192 2 10062 10062;10232 49.933 32.5 1 600370 14517 5091 9319 9325 17763;17764 17763 0.13609973048028223 IPVLVVQAQR 10 Unmodified _IPVLVVQAQR_ 0 0 0 ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENST00000527146.1_2_11:308871-309162:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 561.8534545898438 2 561.853316 1121.69208 0.31973 0.00017964 0.035518 1.9956E-05 0.35524 0.0001996 561.853255965488 50.029 0.74137 53.65 53.375 54.117 3.621 111 43 3 0 0 0 0.31818 1 10041 10041 27.629 13.723 1 547620 14518 5091 9319 9325 17765 17765 0.13609973048028223 IPWRVCLLL 9 Unmodified _IPWRVCLLL_ 0 0 0 L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|96|1|anti-sense L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|96|1|anti-sense L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|96|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.8356323242188 2 556.83608 1111.65761 -0.10794 -6.0106E-05 -0.52696 -0.00029343 -0.6349 -0.00035354 556.8357762833032 13.284 0.33085 16.741 16.653 16.984 3.457 56 38 2 0 0 0 0.48643 1 317 317 2.0598 0.21551 1 59692 14519 14721 9320 9326 17766 17766 0.10624433635598507 IPWTRQPV 8 Unmodified _IPWTRQPV_ 0 0 0 REV__ENSG00000176435|ENST00000342213|CLEC14A REV__ENSG00000176435|ENST00000342213|CLEC14A MSMS UPN47_class_I_Rep_1 2 498.7860412597656 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 66.847 1 70.209 69.709 70.709 3.3611 0 0 0 0.40643 1 16040 16040 2.0598 0.21551 1 + 14520 20587 9321 9327 17767 17767 0.05729483888330833 IPWYVRML 8 Unmodified _IPWYVRML_ 0 0 0 L1MB2_dup7700|chr18:13025517-13027712:-|1.6761676302629709|0.0933016745783515|4.17|150.0|118|2|anti-sense L1MB2_dup7700|chr18:13025517-13027712:-|1.6761676302629709|0.0933016745783515|4.17|150.0|118|2|anti-sense L1MB2_dup7700|chr18:13025517-13027712:-|1.6761676302629709|0.0933016745783515|4.17|150.0|118|2|anti-sense MSMS UPN46_class_I_Rep_3 1 539.2975463867188 2 539.29933 1076.58411 NaN NaN NaN NaN NaN NaN NaN 54.088 1 54.088 53.588 54.588 0 0 0 0 0.40604 1 11686 11686 2.5775 0.51773 1 14521 10288 9322 9328 17768 17768 0.04887885193102193 IPYEVWNGF 9 Unmodified _IPYEVWNGF_ 0 0 0 L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.7745971679688 2 562.7742 1123.53385 0.4846 0.00027272 -0.23125 -0.00013014 0.25335 0.00014258 562.7739454913676 71.25 0.11005 74.716 74.633 74.743 3.466 14 9 2 0 0 0 0.45688 1 16644 16644 4.756 0.81161 1 129070 14522 10386 9323 9329 17769 17769 -0.022979459310590755 IPYEVWNGF 9 Unmodified _IPYEVWNGF_ 0 0 0 L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 562.7742 1123.53385 0.4846 0.00027272 -0.23125 -0.00013014 0.25335 0.00014258 562.7739454913676 71.25 0.11005 74.716 74.633 74.743 3.466 0.029774 -0.0003729 NaN 4.756 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 129070 14523 10386 9323 9329 -0.022979459310590755 IPYEVWNGF 9 Unmodified _IPYEVWNGF_ 0 0 0 L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|193|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 562.7742 1123.53385 0.48636 0.00027371 0.19705 0.0001109 0.68341 0.00038461 563.2757197663319 71.138 0.064827 74.656 74.601 74.666 3.5185 -0.029774 0.00010918 NaN 4.756 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 49903 14524 10386 9323 9329 -0.022979459310590755 IPYGKGLKHKQ 11 Unmodified _IPYGKGLKHKQ_ 0 0 0 REV__L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|40|3|sense REV__L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|40|3|sense MSMS UPN47_class_I_Rep_3 4 634.8787231445312 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 104.19 1 107.71 107.21 108.21 3.5205 0 0 0 0.38417 1 25548 25548 3.2813 0.28607 1 + 14525 30536 9324 9330 17770 17770 0.11693046968093768 IPYGKGLKHKQ 11 Unmodified _IPYGKGLKHKQ_ 0 0 0 REV__L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|40|3|sense REV__L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|40|3|sense MSMS UPN48_class_I_Rep_1 5 634.87841796875 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 104.07 1 107.69 107.19 108.19 3.6209 0 0 0 0.38417 1 25082 25082 3.2813 0 1 + 14526 30536 9324 9330 17771 17771 0.11693046968093768 IPYIYDNW 8 Unmodified _IPYIYDNW_ 0 0 0 REV__THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|9|1|sense REV__THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.76025390625 2 542.260925 1082.5073 0.38318 0.00020778 -0.25635 -0.00013901 0.12683 6.8775E-05 542.2593623594814 49.703 0.60006 53.046 52.772 53.372 3.3431 99 36 4 0 0 0 0.82752 1 10791 10791 10.183 1.5901 1 131960 + 14527 32199 9325 9331 17772 17772 -0.0306563482238289 IQAIKKSLNL 10 Unmodified _IQAIKKSLNL_ 0 0 0 REV__HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|54|2|anti-sense REV__HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.303955078125 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 80.745 1 84.114 83.614 84.614 3.3694 0 0 0 0.53105 1 20103 20103 1.4819 0 1 + 14528 23955 9326 9332 17773 17773 0.14910839845219925 IQEERIEKL 9 Unmodified _IQEERIEKL_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS UPN47_class_I_Rep_1 2 579.3292846679688 2 579.32987 1156.64519 -0.0018878 -1.0937E-06 -0.041448 -2.4012E-05 -0.043335 -2.5105E-05 579.3296855903882 41.759 0.91343 45.438 45.182 46.095 3.6792 86 64 2 0 0 0 0.45441 1 8407 8407 4.897 0.36815 1 81429 + 14529 17643 9327 9333 17774 17774 0.07313068706230297 IQEHLKRFE 9 Unmodified _IQEHLKRFE_ 0 0 0 nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-2|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178 nc|ENSG00000166960|Q5BJE1-3|CCDC178 nc|ENSG00000166960|Q5BJE1-3|CCDC178 MULTI-MSMS UPN48_class_I_Rep_3 7 600.3300170898438 2 600.330205 1198.64586 0.45371 0.00027238 0.26087 0.00015661 0.71458 0.00042899 600.330116429307 43.344 0.85986 46.982 46.632 47.492 3.6385 136 64 3 0 0 0 0.43153 1 8180 8180 6.2058 0.47393 1 297620 14530 4280 9328 9334 17775 17775 0.05447908145947622 IQEYFSYT 8 Unmodified _IQEYFSYT_ 0 0 0 MER4-int_dup1092|chr7:30572122-30572402:+|1.5631438257485608|0.2211641227053275|2.82|151.0|22|3|anti-sense MER4-int_dup1092|chr7:30572122-30572402:+|1.5631438257485608|0.2211641227053275|2.82|151.0|22|3|anti-sense MER4-int_dup1092|chr7:30572122-30572402:+|1.5631438257485608|0.2211641227053275|2.82|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_2 6 525.7431640625 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 119.21 1 122.87 122.37 123.37 3.6652 0 0 0 0.40472 1 28605 28605 4.3292 0.38484 1 14531 15933 9329 9335 17776 17776 -0.052179314389377396 IQFSQHYIH 9 Unmodified _IQFSQHYIH_ 0 0 0 L1MA6_dup820|chr3:32476720-32477425:+|2.108545411394416|0.2308349307993528|3.19|151.0|42|3|anti-sense L1MA6_dup820|chr3:32476720-32477425:+|2.108545411394416|0.2308349307993528|3.19|151.0|42|3|anti-sense L1MA6_dup820|chr3:32476720-32477425:+|2.108545411394416|0.2308349307993528|3.19|151.0|42|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 586.7955932617188 2 586.795998 1171.57744 0.25035 0.0001469 -0.9337 -0.00054789 -0.68335 -0.00040099 586.7954700740117 28.949 0.18716 28.949 28.84 29.027 0 21 13 2 0 0 0 0.50015 1 4501 4501 0.6015 0.076735 1 42585 14532 9998 9330 9336 17777 17777 -0.0014833643390375073 IQFSQHYIH 9 Unmodified _IQFSQHYIH_ 0 0 0 L1MA6_dup820|chr3:32476720-32477425:+|2.108545411394416|0.2308349307993528|3.19|151.0|42|3|anti-sense L1MA6_dup820|chr3:32476720-32477425:+|2.108545411394416|0.2308349307993528|3.19|151.0|42|3|anti-sense L1MA6_dup820|chr3:32476720-32477425:+|2.108545411394416|0.2308349307993528|3.19|151.0|42|3|anti-sense MSMS UPN46_class_I_Rep_3 1 586.79541015625 2 586.795998 1171.57744 NaN NaN NaN NaN NaN NaN NaN 97.636 1 97.636 97.136 98.136 0 0 0 0 0.40038 1 23762 23762 0.6015 0 1 14533 9998 9330 9336 17778 17778 -0.0014833643390375073 IQGETAKTTY 10 Unmodified _IQGETAKTTY_ 0 0 0 REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|24|1|anti-sense REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|24|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2860717773438 2 556.285128 1110.5557 -0.022775 -1.2669E-05 -0.12695 -7.062E-05 -0.14972 -8.3289E-05 556.2850540207653 35.963 0.42555 39.639 39.445 39.87 3.6762 51 28 2 0 0 0 0.31093 1 6695 6695 29.841 0.759 1 87609 + 14534 28246 9331 9337 17779 17779 0.004848140268450152 IQGETAKTTY 10 Unmodified _IQGETAKTTY_ 0 0 0 REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|24|1|anti-sense REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|24|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 556.7841796875 2 556.285128 1110.5557 -0.023642 -1.3152E-05 -0.88074 -0.00048994 -0.90438 -0.00050309 556.2855045970482 35.745 0.094456 39.421 39.342 39.436 3.6762 6 5 2 0 0 0 0.84575 1 6593 6593 7.609 1.4032 1 41326 + 14535 28246 9331 9337 17780 17780 0.004848140268450152 IQHEQPAIF 9 Unmodified _IQHEQPAIF_ 0 0 0 REV__L1MA3_dup2186|chr4:37579076-37582363:-|2.677657353147562|0.2113225362430357|3.66|151.0|38|2|sense REV__L1MA3_dup2186|chr4:37579076-37582363:-|2.677657353147562|0.2113225362430357|3.66|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7854614257812 2 541.785099 1081.55564 0.42014 0.00022763 0.0047679 2.5832E-06 0.42491 0.00023021 541.7849555084539 53.384 0.83575 56.904 56.527 57.362 3.5192 134 60 3 0 0 0 0.23293 1 11254 11254 18.146 1.2041 1 470360 + 14536 25003 9332 9338 17781 17781 0.018128588175159166 IQHNPRLL 8 Unmodified _IQHNPRLL_ 0 0 0 L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|235|1|anti-sense L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|235|1|anti-sense L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|235|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.79644775390625 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 82.55 1 85.948 85.448 86.448 3.3984 0 0 0 0.40581 1 20576 20576 2.8892 0 1 14537 15056 9333 9339 17782 17782 0.08184288636891779 IQILCQQI 8 Unmodified _IQILCQQI_ 0 0 0 REV__Tigger12_dup787|chr14:45207255-45207391:+|2.661603856080564|0.4457447708130883|2.58|151.0|12|3|anti-sense REV__Tigger12_dup787|chr14:45207255-45207391:+|2.661603856080564|0.4457447708130883|2.58|151.0|12|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.7637023925781 2 479.773145 957.531738 NaN NaN NaN NaN NaN NaN NaN 65.685 1 69.042 68.542 69.542 3.3565 0 0 0 0.36705 1 15685 15685 18.135 4.6271 1 + 14538 32580 9334 9340 17783 17783 0.05127302059486283 IQIRKRLCLL 10 Unmodified _IQIRKRLCLL_ 0 0 0 ENST00000562945.2_1_16:34428496-34428757:-|nuORF ENST00000562945.2_1_16:34428496-34428757:-|nuORF ENST00000562945.2_1_16:34428496-34428757:-|nuORF MSMS UPN46_class_I_Rep_3 1 628.40576171875 2 628.405192 1254.79583 NaN NaN NaN NaN NaN NaN NaN 60.33 1 60.33 59.83 60.83 0 0 0 0 0.53105 1 13378 13378 0.45834 0.057624 1 14539 7468 9335 9341 17784 17784 0.17862556884051628 IQIYQQLF 8 Unmodified _IQIYQQLF_ 0 0 0 ENST00000431872.1_1_9:68357853-68358255:-|nuORF ENST00000431872.1_1_9:68357853-68358255:-|nuORF ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.7915649414062 2 526.792392 1051.57023 0.34177 0.00018004 -0.58482 -0.00030808 -0.24305 -0.00012804 526.7920281151114 58.799 0.41099 62.216 61.994 62.405 3.4171 36 26 2 0 0 0 0.82752 1 13624 13624 2.3027 0.24298 1 43489 14540 6733 9336 9342 17785 17785 0.0465093096563578 IQKIKEIKSW 10 Unmodified _IQKIKEIKSW_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 636.8873901367188 2 636.887355 1271.76016 0.43352 0.0002761 0.47412 0.00030196 0.90764 0.00057806 636.8874218164299 108.66 0.57419 112.29 112.17 112.75 3.6321 165 68 3 0 0 0 0.48573 1 26385 26385 13.042 0.80181 1 16342000 14541 15307 9337 9343 17786 17786 0.13514797908010223 IQKQPHIWG 9 Unmodified _IQKQPHIWG_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|162|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|162|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|162|3|sense MSMS UPN48_class_I_Rep_3 7 553.8064575195312 2 553.808908 1105.60326 NaN NaN NaN NaN NaN NaN NaN 20.377 1 24.044 23.544 24.544 3.6667 0 0 0 0.40038 1 1721 1721 0.6015 0 1 14542 10389 9338 9344 17787 17787 0.0546855780835358 IQKQQKAI 8 Unmodified _IQKQQKAI_ 0 0 0 REV__L1MB3_dup2397|chr2:161186442-161187145:+|1.943087020044633|0.0738173335915886|4.72|151.0|4|1|sense REV__L1MB3_dup2397|chr2:161186442-161187145:+|1.943087020044633|0.0738173335915886|4.72|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 478.7980651855469 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 62.216 1 65.682 65.182 66.182 3.4659 0 0 0 0.4044 1 13907 13907 4.756 0.81161 1 + 14543 25865 9339 9345 17788 17788 0.10189753059785289 IQKVEVYPV 9 Unmodified _IQKVEVYPV_ 0 0 0 nc|ENSG00000102226|P51784|USP11;ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF nc|ENSG00000102226|P51784|USP11 nc|ENSG00000102226|P51784|USP11 MULTI-MSMS UPN48_class_I_Rep_3 7 538.3146362304688 2 537.813325 1073.6121 0.57446 0.00030895 -0.28834 -0.00015507 0.28612 0.00015388 537.8130582053984 108.73 0.23579 112.41 112.31 112.54 3.6751 43 25 2 0 0 0 0.36392 1 25777 25777 10.074 3.8681 1 6049100 14544 1607 9340 9346 17789 17789 0.07823486654183398 IQKWDHWV 8 Unmodified _IQKWDHWV_ 0 0 0 L1PA6_dup705|chr2:135328066-135331880:-|1.8498110649223565|0.1181742950830598|3.97|151.0|165|2|anti-sense L1PA6_dup705|chr2:135328066-135331880:-|1.8498110649223565|0.1181742950830598|3.97|151.0|165|2|anti-sense L1PA6_dup705|chr2:135328066-135331880:-|1.8498110649223565|0.1181742950830598|3.97|151.0|165|2|anti-sense MSMS UPN48_class_I_Rep_3 7 556.2882080078125 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 79.136 1 82.779 82.279 83.279 3.6423 0 0 0 0.40746 1 18755 18755 0.69038 0 1 14545 14672 9341 9347 17790 17790 0.01020582399974046 IQLCSLEAL 9 Unmodified _IQLCSLEAL_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-2|VPS13A REV__nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS UPN47_class_I_Rep_2 3 495.27001953125 2 495.270435 988.526318 NaN NaN NaN NaN NaN NaN NaN 74.425 1 77.738 77.238 78.238 3.3127 0 0 0 0.34878 1 18339 18339 8.1555 0.8663 1 + 14546 32094 9342 9348 17791 17791 0.03159578477016112 IQLNCSTSLK 10 Unmodified _IQLNCSTSLK_ 0 0 0 HAL1_dup19028|chr15:51562269-51563129:+|1.0569591634477178|0.0533034733372137|4.31|150.0|46|2|anti-sense HAL1_dup19028|chr15:51562269-51563129:+|1.0569591634477178|0.0533034733372137|4.31|150.0|46|2|anti-sense HAL1_dup19028|chr15:51562269-51563129:+|1.0569591634477178|0.0533034733372137|4.31|150.0|46|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.79833984375 2 553.797349 1105.58014 -0.15748 -8.7209E-05 0.19109 0.00010583 0.033616 1.8617E-05 553.7974930880306 32.021 1.52 35.32 34.78 36.3 3.2991 244 117 3 0 0 0 0.56155 1 5400 5400 2.7352 2.7352 1 625420 14547 7848 9343 9349 17792 17792 0.03157750908712842 IQLPRNKDKEI 11 Unmodified _IQLPRNKDKEI_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|159|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|159|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|159|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.93316650390625 3 451.933143 1352.7776 -0.15994 -7.2283E-05 -0.62698 -0.00028335 -0.78692 -0.00035564 451.9327199035893 103.39 0.17447 106.89 106.8 106.98 3.5057 51 26 3 0 0 0 0.66974 1 25370 25370 1.4551 0.75745 1 189660 14548 9292 9344 9350 17793 17793 0.11532093443042868 IQLSPTRSL 9 Unmodified _IQLSPTRSL_ 0 0 0 THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|24|2|anti-sense;THE1B_dup8095|chr6:2334024-2334388:-|1.0406467338928982|0.0305909459161641|5.09|151.0|22|2|anti-sense THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.8006591796875 2 507.800749 1013.58694 0.19963 0.00010137 -0.4637 -0.00023547 -0.26407 -0.00013409 507.8004406034325 56.345 0.97628 59.802 59.236 60.212 3.4572 137 58 3 0 0 0 0.0070866 6 12807 12764;12807;12846;12891;12930;12942 71.922 0 1 815940 14549 32881 9345 9351 17794;17795;17796;17797;17798;17799 17795 0.08069431851606623 IQLSPTRSL 9 Unmodified _IQLSPTRSL_ 0 0 0 THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|24|2|anti-sense;THE1B_dup8095|chr6:2334024-2334388:-|1.0406467338928982|0.0305909459161641|5.09|151.0|22|2|anti-sense THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.8006896972656 2 507.800749 1013.58694 0.22985 0.00011672 -0.49539 -0.00025156 -0.26554 -0.00013484 507.8003097412598 56.371 0.84625 59.672 59.381 60.228 3.3009 125 59 3 0 0 0 0.037922 6 12884 12844;12884;12929;12969;13009;13050 53.833 0 1 1204200 14550 32881 9345 9351 17800;17801;17802;17803;17804;17805 17801 0.08069431851606623 IQLSPTRSL 9 Unmodified _IQLSPTRSL_ 0 0 0 THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense;THE1B_dup18672|chr14:60104513-60104874:-|1.1079403184936376|0.0561075855520376|4.3|150.0|24|2|anti-sense;THE1B_dup8095|chr6:2334024-2334388:-|1.0406467338928982|0.0305909459161641|5.09|151.0|22|2|anti-sense THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense THE1B_dup19276|chr15:56233092-56233478:-|1.002708315159245|0.0308763568054649|5.02|150.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.80059814453125 2 507.800749 1013.58694 0.20032 0.00010172 -0.87937 -0.00044655 -0.67905 -0.00034482 507.80016562282987 56.666 0.95982 59.838 59.373 60.333 3.1721 147 73 3 0 0 0 0.021334 4 13029 12944;12986;13029;13069 62.573 0 1 682280 14551 32881 9345 9351 17806;17807;17808;17809 17808 0.08069431851606623 IQNDRQLQY 9 Unmodified _IQNDRQLQY_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3015747070312 2 589.301644 1176.58874 0.39302 0.00023161 -0.04077 -2.4026E-05 0.35225 0.00020758 589.3016112236438 34.927 0.45227 34.927 34.74 35.192 0 67 35 3 0 0 0 0.20317 3 6308 6261;6308;6356 20.415 6.0752 1 164230 14552 1475 9346 9352 17810;17811;17812 17811 0.0075044086956950196 IQNFICRPNY 10 Unmodified _IQNFICRPNY_ 0 0 0 L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|54|2|sense L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|54|2|sense L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|54|2|sense MSMS UPN48_class_I_Rep_3 7 634.3184814453125 2 634.31624 1266.61793 NaN NaN NaN NaN NaN NaN NaN 61.757 1 65.267 64.767 65.767 3.5104 0 0 0 0.53105 1 13674 13674 1.4819 0.28856 1 14553 13525 9347 9353 17813 17813 -0.00471738105784425 IQNPDITSSRY 11 Unmodified _IQNPDITSSRY_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MULTI-MSMS UPN46_class_I_Rep_3 1 647.3270874023438 2 647.325316 1292.63608 0.74211 0.00048039 -0.033129 -2.1445E-05 0.70899 0.00045894 647.3254035117602 41.911 0.20943 41.911 41.796 42.005 0 34 23 2 0 0 0 0.29552 3 8252 8236;8250;8252 22.775 7.5265 1 148820 14554 797 9348 9354 17814;17815;17816 17816 0.0014667534990167042 IQNVKYKISYI 11 Unmodified _IQNVKYKISYI_ 0 0 0 L1ME1_dup30450|chr21:45192703-45194127:+|1.2346834530511617|0.2363220637787246|2.39|151.0|14|1|sense L1ME1_dup30450|chr21:45192703-45194127:+|1.2346834530511617|0.2363220637787246|2.39|151.0|14|1|sense L1ME1_dup30450|chr21:45192703-45194127:+|1.2346834530511617|0.2363220637787246|2.39|151.0|14|1|sense MSMS UPN48_class_I_Rep_3 7 456.9344482421875 3 456.934372 1367.78129 NaN NaN NaN NaN NaN NaN NaN 18.645 1 22.232 21.732 22.732 3.5874 0 0 0 0.38417 1 1265 1265 0.50596 0 1 14555 12388 9349 9355 17817 17817 0.11210763216899977 IQPGRGFVLY 10 Unmodified _IQPGRGFVLY_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 575.3241577148438 2 575.324391 1148.63423 0.4232 0.00024348 0.030243 1.7399E-05 0.45344 0.00026088 575.3243288076394 62.403 0.648 62.403 62.191 62.839 0 153 63 3 0 0 0 0.35076 4 13958 13915;13958;13992;14043 24.021 9.1823 1 861210 14556 4343 9350 9356 17818;17819;17820;17821 17819 0.06585711122625071 IQPLTVVP 8 Unmodified _IQPLTVVP_ 0 0 0 REV__L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|71|3|sense REV__L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|71|3|sense MSMS UPN48_class_I_Rep_1 5 433.7695617675781 2 433.770929 865.527304 NaN NaN NaN NaN NaN NaN NaN 107.42 1 111.05 110.55 111.55 3.6299 0 0 0 0.4044 1 25896 25896 4.756 0 1 + 14557 27774 9351 9357 17822 17822 0.08916160908222537 IQRHRLAER 9 Unmodified _IQRHRLAER_ 0 0 0 L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|78|2|sense L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|78|2|sense L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|78|2|sense MSMS UPN48_class_I_Rep_3 7 589.845703125 2 589.846887 1177.67922 NaN NaN NaN NaN NaN NaN NaN 84.838 1 88.587 88.087 89.087 3.7494 0 0 0 0.37476 1 20129 20129 6.7232 0.99131 1 14558 9376 9352 9358 17823 17823 0.09748954708493329 IQRKSGFTLLS 11 Unmodified _IQRKSGFTLLS_ 0 0 0 ENST00000380762.4_1_X:11135438-11135528:+|nuORF ENST00000380762.4_1_X:11135438-11135528:+|nuORF ENST00000380762.4_1_X:11135438-11135528:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 625.3643798828125 2 625.366787 1248.71902 0.42729 0.00026722 -0.63791 -0.00039893 -0.21061 -0.00013171 625.3666584784294 98.694 0.43051 102.3 101.99 102.42 3.6065 92 61 2 0 0 0 0.50573 1 23807 23807 7.609 0 1 2158100 14559 6490 9353 9359 17824 17824 0.10461036868582596 IQRKSGFTLLS 11 Unmodified _IQRKSGFTLLS_ 0 0 0 ENST00000380762.4_1_X:11135438-11135528:+|nuORF ENST00000380762.4_1_X:11135438-11135528:+|nuORF ENST00000380762.4_1_X:11135438-11135528:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 625.366787 1248.71902 0.55506 0.00034711 -0.49796 -0.00031141 0.057097 3.5706E-05 625.8673909823859 98.641 0.1385 102.43 102.32 102.46 3.7926 0.14107 2.2029E-05 NaN 7.609 21 19 2 NaN NaN NaN NaN 0 NaN NaN 0 296200 14560 6490 9353 9359 0.10461036868582596 IQRKSGFTLLS 11 Unmodified _IQRKSGFTLLS_ 0 0 0 ENST00000380762.4_1_X:11135438-11135528:+|nuORF ENST00000380762.4_1_X:11135438-11135528:+|nuORF ENST00000380762.4_1_X:11135438-11135528:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 625.366787 1248.71902 0.51228 0.00032036 0.58046 0.000363 1.0927 0.00068337 625.8682990525032 98.836 0.10426 102.27 102.21 102.31 3.4328 -0.02454 0.0013708 NaN 7.609 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 413450 14561 6490 9353 9359 0.10461036868582596 IQRSKRNPIS 10 Unmodified _IQRSKRNPIS_ 0 0 0 ENST00000464408.3_1_2:73828377-73831076:+|nuORF ENST00000464408.3_1_2:73828377-73831076:+|nuORF ENST00000464408.3_1_2:73828377-73831076:+|nuORF MSMS UPN48_class_I_Rep_1 5 400.23809814453125 3 400.238678 1197.6942 NaN NaN NaN NaN NaN NaN NaN 109.27 1 112.9 112.4 113.4 3.6321 0 0 0 0.53105 1 26527 26527 1.7423 0 1 14562 6881 9354 9360 17825 17825 0.10326401785846429 IQRVIANNV 9 Unmodified _IQRVIANNV_ 0 0 0 L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|23|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|23|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 513.80615234375 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 88.213 1 91.601 91.101 92.101 3.3873 0 0 0 0.39518 1 22123 22123 1.8442 0 1 14563 13115 9355 9361 17826 17826 0.08640253945759468 IQSFESLQI 9 Unmodified _IQSFESLQI_ 0 0 0 REV__L1ME3A_dup14197|chr18:32108159-32108662:-|1.4602178594054498|0.0337704179080972|5.43|151.0|20|1|anti-sense REV__L1ME3A_dup14197|chr18:32108159-32108662:-|1.4602178594054498|0.0337704179080972|5.43|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_1 5 532.7865600585938 2 532.784764 1063.55498 NaN NaN NaN NaN NaN NaN NaN 54.226 1 57.74 57.24 58.24 3.5143 0 0 0 0.092202 1 11460 11460 26.268 2.2476 1 + 14564 28003 9356 9362 17827 17827 0.025740193778119647 IQSGSTTQF 9 Unmodified _IQSGSTTQF_ 0 0 0 nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-5|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF nc|ENSG00000127914|Q99996-3|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 MULTI-MSMS UPN46_class_I_Rep_3 1 484.73712158203125 2 484.737814 967.461075 0.18634 9.0328E-05 -0.2942 -0.00014261 -0.10785 -5.228E-05 484.7379383820122 37.532 0.36077 37.532 37.409 37.77 0 54 32 2 0 0 0 0.15547 1 7083 7083 24.991 0.97039 1 114910 14565 2577 9357 9363 17828 17828 -0.023956997244908962 IQSRELKKIP 10 Unmodified _IQSRELKKIP_ 0 0 0 REV__L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|6|1|sense REV__L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 404.9232482910156 3 404.587195 1210.73976 -0.11842 -4.7909E-05 3.5581 0.0014396 3.4397 0.0013917 404.5884420028956 40.108 0.21515 43.613 43.553 43.769 3.5048 23 15 2 0 0 0 0.56371 1 7163 7163 1.2148 0 1 84805 + 14566 29188 9358 9364 17829 17829 0.14281627248237783 IQSRELKTI 9 Unmodified _IQSRELKTI_ 0 0 0 REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|97|3|sense REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|97|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.3269653320312 2 544.327131 1086.63971 0.0075956 4.1345E-06 -0.16333 -8.8906E-05 -0.15574 -8.4772E-05 544.3270168584769 37.613 1.2351 41.278 40.897 42.132 3.6652 202 91 3 0 0 0 0.079935 2 7122 7122;7241 38.615 1.5401 1 640680 + 14567 28942 9359 9365 17830;17831 17830 0.09985389914436382 IQSRELKTI 9 Unmodified _IQSRELKTI_ 0 0 0 REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|97|3|sense REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|97|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.3268432617188 2 544.327131 1086.63971 0.012828 6.9828E-06 -0.16619 -9.046E-05 -0.15336 -8.3478E-05 544.3269849420462 38.038 1.0775 41.426 41.024 42.102 3.3879 224 87 3 0 0 0 0.079935 1 7366 7366 38.615 1.5401 1 450800 + 14568 28942 9359 9365 17832 17832 0.09985389914436382 IQSRELKTI 9 Unmodified _IQSRELKTI_ 0 0 0 REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|97|3|sense REV__L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|97|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.3271484375 2 544.327131 1086.63971 -0.074383 -4.0489E-05 -0.21916 -0.00011929 -0.29354 -0.00015978 544.3270213355781 38.279 1.2339 41.52 41.032 42.266 3.2414 199 90 3 0 0 0 0.079935 1 7462 7462 38.615 1.5401 1 471840 + 14569 28942 9359 9365 17833 17833 0.09985389914436382 IQTIRSQKKF 10 Unmodified _IQTIRSQKKF_ 0 0 0 REV__chr12:71782085-71782165|54|10.15|0.41|4.64|+|2|RAB21,None|1 REV__chr12:71782085-71782165|54|10.15|0.41|4.64|+|2|RAB21,None|1 MSMS UPN48_class_I_Rep_3 7 624.8763427734375 2 624.874779 1247.73501 NaN NaN NaN NaN NaN NaN NaN 92.233 1 96.112 95.612 96.612 3.8782 0 0 0 0.53105 1 21872 21872 2.7352 0.89096 1 + 14570 17435 9360 9366 17834 17834 0.1210474310544214 IQTTKIFP 8 Unmodified _IQTTKIFP_ 0 0 0 Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|114|3|anti-sense Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|114|3|anti-sense Tigger1_dup5906|chr7:127931238-127932957:+|1.2430506476635714|0.0769696176579612|4.01|151.0|114|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2823486328125 2 474.28166 946.548768 0.098829 4.6873E-05 1.6997 0.00080612 1.7985 0.00085299 474.28231517460625 34.912 0.084476 34.912 34.892 34.976 0 9 5 3 0 0 0 0.82752 1 6298 6298 4.3292 0 1 1890400 14571 33135 9361 9367 17835 17835 0.07335545936950894 IQVPGSNVGGP 11 Unmodified _IQVPGSNVGGP_ 0 0 0 REV__ENST00000595934.1_1_19:50360913-50361129:+|nuORF REV__ENST00000595934.1_1_19:50360913-50361129:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 512.7742309570312 2 512.774731 1023.53491 -0.23589 -0.00012096 -0.0042438 -2.1761E-06 -0.24013 -0.00012313 512.7746561774516 37.97 0.6016 41.212 40.956 41.558 3.2414 92 46 3 0 0 0 0.50573 1 7290 7290 7.609 0.50723 1 148500 + 14572 18276 9362 9368 17836 17836 0.024082684378640806 IQVVRVGIL 9 Unmodified _IQVVRVGIL_ 0 0 0 L1PB_dup1144|chr10:45836170-45836868:-|2.1958037615513897|0.4604688113490694|2.25|151.0|51|3|anti-sense L1PB_dup1144|chr10:45836170-45836868:-|2.1958037615513897|0.4604688113490694|2.25|151.0|51|3|anti-sense L1PB_dup1144|chr10:45836170-45836868:-|2.1958037615513897|0.4604688113490694|2.25|151.0|51|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 498.83160400390625 2 498.831852 995.649151 -0.22133 -0.00011041 0.21805 0.00010877 -0.0032865 -1.6394E-06 498.83189095768756 40.791 0.95873 44.028 43.426 44.384 3.2372 133 61 3 0 0 0 0.36392 1 8277 8277 10.074 3.3508 1 314910 14573 14988 9363 9369 17837 17837 0.15115202990614307 IQVYDYDLE 9 Unmodified _IQVYDYDLE_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN46_class_I_Rep_3 1 579.2717895507812 2 579.271687 1156.52882 0.48917 0.00028336 -0.64868 -0.00037576 -0.1595 -9.2395E-05 579.2714670104813 79.715 0.43211 79.715 79.496 79.928 0 53 39 2 0 0 0 0.43153 2 18717 18717;18784 6.2058 0 1 175690 + 14574 20700 9364 9370 17838;17839 17838 -0.04318294584368232 IQVYDYDLE 9 Unmodified _IQVYDYDLE_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-SECPEP UPN46_class_I_Rep_3 1 579.7008666992188 2 579.271687 1156.52882 0.48917 0.00028336 -0.64868 -0.00037576 -0.1595 -9.2395E-05 579.2714670104813 79.715 0.43211 79.715 79.496 79.928 0 53 39 2 0 0 0 0.12157 1 18690 18690 6.2058 0 1 175690 + 14575 20700 9364 9370 17840 17840 -0.04318294584368232 IQWNIIQL 8 Unmodified _IQWNIIQL_ 0 0 0 L1MB4_dup674|chr2:39040324-39041069:-|1.7622145728230152|0.0520438298018492|5.08|151.0|19|2|sense L1MB4_dup674|chr2:39040324-39041069:-|1.7622145728230152|0.0520438298018492|5.08|151.0|19|2|sense L1MB4_dup674|chr2:39040324-39041069:-|1.7622145728230152|0.0520438298018492|5.08|151.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 514.3004760742188 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.525 1 75.075 74.575 75.575 3.5505 0 0 0 0.35715 1 16694 16694 20.454 3.5113 1 14576 10562 9365 9371 17841 17841 0.073986372025729 IRAKIPKG 8 Unmodified _IRAKIPKG_ 0 0 0 REV__ENSG00000107929|ENST00000316157|LARP4B REV__ENSG00000107929|ENST00000316157|LARP4B MSMS UPN48_class_I_Rep_1 5 441.78790283203125 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 36.974 1 40.481 39.981 40.981 3.507 0 0 0 0.40604 1 6234 6234 2.5775 0 1 + 14577 18367 9366 9372 17842 17842 0.1355437813061826 IRAVRESLPIR 11 Unmodified _IRAVRESLPIR_ 0 0 0 REV__Charlie2a_dup2113|chr22:40303915-40304782:+|1.0143964267998575|0.0406880115868599|4.64|151.0|3|1|sense REV__Charlie2a_dup2113|chr22:40303915-40304782:+|1.0143964267998575|0.0406880115868599|4.64|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 437.2674865722656 3 437.273611 1308.799 NaN NaN NaN NaN NaN NaN NaN 49.9 1 53.425 52.925 53.925 3.5246 0 0 0 0.38417 1 10134 10134 2.6312 0.19645 1 + 14578 17372 9367 9373 17843 17843 0.1569552326241137 IRAWLKAPV 9 Unmodified _IRAWLKAPV_ 0 0 0 REV__ENST00000479155.1_1_17:18137242-18138852:+|nuORF REV__ENST00000479155.1_1_17:18137242-18138852:+|nuORF MSMS UPN47_class_I_Rep_2 3 527.3317260742188 2 527.332019 1052.64948 NaN NaN NaN NaN NaN NaN NaN 110.98 1 114.51 114.01 115.01 3.5271 0 0 0 0.4007 1 27017 27017 0.52476 0 1 + 14579 18990 9368 9374 17844 17844 0.12526622710447555 IRCKFAQKL 9 Unmodified _IRCKFAQKL_ 0 0 0 REV__ENST00000560827.5_3_15:56536467-56665671:+|nuORF REV__ENST00000560827.5_3_15:56536467-56665671:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 553.829833984375 2 553.828786 1105.64302 0.40419 0.00022385 2.0092 0.0011127 2.4133 0.0013366 553.8296522477784 82.648 0.18499 82.648 82.553 82.738 0 19 18 2 0 0 0 0.48846 1 19592 19592 1.8442 0.19162 1 181390 + 14580 23022 9369 9375 17845 17845 0.09442361487435846 IRCKGCQPIA 10 Unmodified _IRCKGCQPIA_ 0 0 0 REV__ENSG00000187758|ENST00000209668|ADH1A REV__ENSG00000187758|ENST00000209668|ADH1A MSMS UPN47_class_I_Rep_1 2 544.7894897460938 2 544.788804 1087.56305 NaN NaN NaN NaN NaN NaN NaN 53.384 1 56.912 56.412 57.412 3.5278 0 0 0 0.53105 1 11956 11956 9.3831 0.035688 1 + 14581 20940 9370 9376 17846 17846 0.022775518219305013 IRCMPVNR 8 Unmodified _IRCMPVNR_ 0 0 0 L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|63|1|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|63|1|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.7629699707031 2 494.762589 987.510625 NaN NaN NaN NaN NaN NaN NaN 28.174 1 31.916 31.416 32.416 3.7424 0 0 0 0.40746 1 3799 3799 0.69038 0 1 14582 8858 9371 9377 17847 17847 0.016370134789781332 IRCVVLEYF 9 Unmodified _IRCVVLEYF_ 0 0 0 REV__MERX_dup211|chr8:100285922-100286635:+|1.0403062367827562|0.1832743040253283|2.5|151.0|29|1|anti-sense REV__MERX_dup211|chr8:100285922-100286635:+|1.0403062367827562|0.1832743040253283|2.5|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_3 7 571.3078002929688 2 571.307352 1140.60015 NaN NaN NaN NaN NaN NaN NaN 68.075 1 71.583 71.083 72.083 3.5077 0 0 0 0.38639 1 15587 15587 3.9444 0 1 + 14583 31582 9372 9378 17848 17848 0.03547546639333632 IRDVIIGHP 9 Unmodified _IRDVIIGHP_ 0 0 0 REV__nc|ENSG00000099256|Q9NRG1-3|PRTFDC1 REV__nc|ENSG00000099256|Q9NRG1-3|PRTFDC1 MULTI-MSMS UPN48_class_I_Rep_3 7 510.3035888671875 2 510.303458 1018.59236 0.28313 0.00014448 0.18836 9.6118E-05 0.47148 0.0002406 510.3033559303486 111.03 0.20539 114.7 114.65 114.86 3.6654 38 25 2 0 0 0 0.48846 1 26349 26349 1.8442 0 1 97622 + 14584 18064 9373 9379 17849 17849 0.08381155434096854 IREYPYRRQ 9 Unmodified _IREYPYRRQ_ 0 0 0 REV__ENSG00000171316|ENST00000423902|CHD7 REV__ENSG00000171316|ENST00000423902|CHD7 MSMS UPN46_class_I_Rep_3 1 640.8441772460938 2 640.846553 1279.67855 NaN NaN NaN NaN NaN NaN NaN 55.458 1 55.458 54.958 55.958 0 0 0 0 0.39518 1 12055 12055 1.8442 0 1 + 14585 20402 9374 9380 17850 17850 0.04990115268788031 IRFALGWI 8 Unmodified _IRFALGWI_ 0 0 0 REV__Ricksha_c_dup285|chr4:83079845-83081155:+|1.870141830402009|0.0296312264032745|5.98|151.0|76|2|anti-sense REV__Ricksha_c_dup285|chr4:83079845-83081155:+|1.870141830402009|0.0296312264032745|5.98|151.0|76|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 488.2428283691406 2 488.292362 974.570172 0.28921 0.00014122 -4.2203 -0.0020608 -3.9311 -0.0019195 488.2904582438916 115.87 0.064407 115.87 115.81 115.88 0 5 4 2 0 0 0 0.72333 1 28654 28654 0.79363 0 1 13774 + 14586 32174 9375 9381 17851 17851 0.08186975756302672 IRFFFFWT 8 Unmodified _IRFFFFWT_ 0 0 0 REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|120|1|anti-sense REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|120|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3060302734375 2 582.30547 1162.59639 NaN NaN NaN NaN NaN NaN NaN 43.691 1 46.933 46.433 47.433 3.2419 0 0 0 0.40625 1 9090 9090 2.3027 0.24298 1 + 14587 24553 9376 9382 17852 17852 0.021592449277932246 IRFGRVTV 8 Unmodified _IRFGRVTV_ 0 0 0 REV__ENSG00000186732|ENST00000443721|MPPED1 REV__ENSG00000186732|ENST00000443721|MPPED1 MULTI-SECPEP UPN46_class_I_Rep_3 1 474.06365966796875 2 474.292894 946.571235 0.22353 0.00010602 -2.1662 -0.0010274 -1.9427 -0.00092141 474.2912832789967 76.457 0.060852 76.457 76.436 76.497 0 6 4 2 0 0 0 0.72333 1 17836 17836 0.69038 0 1 30242 + 14588 20903 9377 9383 17853 17853 0.09581190125209105 IRFGRVTV 8 Unmodified _IRFGRVTV_ 0 0 0 REV__ENSG00000186732|ENST00000443721|MPPED1 REV__ENSG00000186732|ENST00000443721|MPPED1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 474.292894 946.571235 0.1025 4.8615E-05 -3.4387 -0.001631 -3.3362 -0.0015824 474.2908533169048 73.139 0.23804 76.436 76.351 76.589 3.2971 0.12459 0.00073396 NaN 0.69038 18 17 2 NaN NaN NaN NaN 0 NaN NaN 0 39207 + 14589 20903 9377 9383 0.09581190125209105 IRFGRVTV 8 Unmodified _IRFGRVTV_ 0 0 0 REV__ENSG00000186732|ENST00000443721|MPPED1 REV__ENSG00000186732|ENST00000443721|MPPED1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 474.292894 946.571235 0.21012 9.966E-05 -4.5423 -0.0021544 -4.3322 -0.0020547 474.29071885916716 72.624 0.097397 76.189 76.154 76.252 3.5645 -0.12281 -0.00031292 NaN 0.69038 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 61637 + 14590 20903 9377 9383 0.09581190125209105 IRFGRVTV 8 Unmodified _IRFGRVTV_ 0 0 0 REV__ENSG00000186732|ENST00000443721|MPPED1 REV__ENSG00000186732|ENST00000443721|MPPED1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 474.292894 946.571235 0.26382 0.00012513 -4.429 -0.0021006 -4.1651 -0.0019755 474.29059582915016 72.628 0.04641 76.165 76.136 76.182 3.5373 -0.1468 -0.00020536 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 40615 + 14591 20903 9377 9383 0.09581190125209105 IRFHRLPAL 9 Unmodified _IRFHRLPAL_ 0 0 0 REV__ENST00000408959.2_1_3:48956197-48956359:-|nuORF REV__ENST00000408959.2_1_3:48956197-48956359:-|nuORF MSMS UPN46_class_I_Rep_3 1 561.84619140625 2 561.848368 1121.68218 NaN NaN NaN NaN NaN NaN NaN 91.701 1 91.701 91.201 92.201 0 0 0 0 0.40038 1 22160 22160 0.6015 0 1 + 14592 22174 9378 9384 17854 17854 0.12620829833304015 IRFLHSEALLA 11 Unmodified _IRFLHSEALLA_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MSMS UPN48_class_I_Rep_1 5 635.3705444335938 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 90.616 1 94.242 93.742 94.742 3.626 0 0 0 0.38417 1 21779 21779 1.1933 0 1 14593 5667 9379 9385 17855 17855 0.1004934073118875 IRFRKFSWTI 10 Unmodified _IRFRKFSWTI_ 0 0 0 L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|102|2|anti-sense L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|102|2|anti-sense L1P4a_dup67|chr3:18199174-18201078:-|1.484763779868835|0.0045319685010647|8.36|148.0|102|2|anti-sense MSMS UPN48_class_I_Rep_1 5 451.9324951171875 3 451.931185 1352.77173 NaN NaN NaN NaN NaN NaN NaN 103.03 1 106.65 106.15 107.15 3.6164 0 0 0 0.53105 1 24837 24837 1.7423 0.52744 1 14594 13566 9380 9386 17856 17856 0.10945039722014371 IRFRPMHVVL 10 Unmodified _IRFRPMHVVL_ 0 0 0 REV__ENSG00000117601|ENST00000367698|SERPINC1 REV__ENSG00000117601|ENST00000367698|SERPINC1 MSMS UPN47_class_I_Rep_1 2 634.3786010742188 2 634.376435 1266.73832 NaN NaN NaN NaN NaN NaN NaN 106.81 1 110.48 109.98 110.98 3.6724 0 0 0 0.53105 1 26175 26175 1.6526 1.1279 1 + + 14595 17481 9381 9387 17857 17857 0.11561714678464341 IRFRPMHVVL 10 Unmodified _IRFRPMHVVL_ 0 0 0 REV__ENSG00000117601|ENST00000367698|SERPINC1 REV__ENSG00000117601|ENST00000367698|SERPINC1 MULTI-MSMS UPN47_class_I_Rep_3 4 634.37646484375 2 634.376435 1266.73832 0.51351 0.00032576 1.68 0.0010657 2.1935 0.0013915 634.3779707884426 106.64 0.12878 110.18 110.11 110.24 3.5367 22 19 2 0 0 0 0.56309 1 26065 26065 1.6526 0.32309 1 111770 + + 14596 17481 9381 9387 17858 17858 0.11561714678464341 IRGVFMFFF 9 Unmodified _IRGVFMFFF_ 0 0 0 REV__L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|78|3|anti-sense REV__L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|78|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3050537109375 2 582.307155 1162.59976 NaN NaN NaN NaN NaN NaN NaN 43.769 1 47.011 46.511 47.511 3.2419 0 0 0 0.39428 1 9114 9114 2.0598 0.21551 1 + 14597 30220 9382 9388 17859 17859 0.02496171710163253 IRHKHAVVM 9 Unmodified _IRHKHAVVM_ 0 0 0 L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|148|2|anti-sense L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|148|2|anti-sense L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|148|2|anti-sense MSMS UPN46_class_I_Rep_3 1 545.819091796875 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 81.799 1 81.799 81.299 82.299 0 0 0 0 0.39326 1 19338 19338 2.3027 0 1 14598 13301 9383 9389 17860 17860 0.0817261054746723 IRHPFFMRRLL 11 Unmodified _IRHPFFMRRLL_ 0 0 0 REV__L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense REV__L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2937316894531 3 495.958969 1484.85508 0.30656 0.00015204 -0.076624 -3.8002E-05 0.22993 0.00011404 495.95889966254697 100.58 0.24697 100.58 100.36 100.61 0 39 29 2 0 0 0 0.68024 1 24474 24474 0.50596 0 1 441060 + 14599 27817 9384 9390 17861 17861 0.13204452898253294 IRHPFFMRRLL 11 Unmodified _IRHPFFMRRLL_ 0 0 0 REV__L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense REV__L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958969 1484.85508 0.44669 0.00022154 -0.15004 -7.4414E-05 0.29665 0.00014712 495.9586263317227 97.141 0.074623 100.62 100.58 100.65 3.4796 0.065195 -0.00014948 NaN 0.50596 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 66855 + 14600 27817 9384 9390 0.13204452898253294 IRHPFFMRRLL 11 Unmodified _IRHPFFMRRLL_ 0 0 0 REV__L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense REV__L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 495.958969 1484.85508 0.28008 0.00013891 0.36307 0.00018007 0.64315 0.00031898 495.9591582921156 97.055 0.068405 100.47 100.43 100.49 3.414 -0.086793 0.00061396 NaN 0.50596 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 99406 + 14601 27817 9384 9390 0.13204452898253294 IRHQRHRKQKE 11 Unmodified _IRHQRHRKQKE_ 0 0 0 L1MB3_dup16909|chr22:49807163-49808710:+|2.736038678632608|0.2769566295885632|3.3|151.0|44|3|sense L1MB3_dup16909|chr22:49807163-49808710:+|2.736038678632608|0.2769566295885632|3.3|151.0|44|3|sense L1MB3_dup16909|chr22:49807163-49808710:+|2.736038678632608|0.2769566295885632|3.3|151.0|44|3|sense MSMS UPN46_class_I_Rep_3 1 505.9633483886719 3 505.96243 1514.86546 NaN NaN NaN NaN NaN NaN NaN 81.683 1 81.683 81.183 82.183 0 0 0 0 0.38417 1 19304 19304 0.094841 0 1 14602 10376 9385 9391 17862 17862 0.12862151876993266 IRHTGKKCF 9 Unmodified _IRHTGKKCF_ 0 0 0 nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91 nc|ENSG00000167232|Q05481-2|ZNF91 nc|ENSG00000167232|Q05481-2|ZNF91 MSMS UPN46_class_I_Rep_3 1 544.8287353515625 2 545.302936 1088.59132 NaN NaN NaN NaN NaN NaN NaN 78.966 1 78.966 78.466 79.466 0 0 0 0 0.39598 1 18525 18525 1.6526 0 1 14603 4293 9386 9392 17863 17863 0.0505661779352522 IRIHMLWCK 9 Unmodified _IRIHMLWCK_ 0 0 0 REV__L1MC5a_dup3676|chr3:152325848-152326223:-|3.726807919036175|0.0943929572387023|5.3|151.0|4|1|sense REV__L1MC5a_dup3676|chr3:152325848-152326223:-|3.726807919036175|0.0943929572387023|5.3|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 600.3310546875 2 600.330639 1198.64672 NaN NaN NaN NaN NaN NaN NaN 71.267 1 74.786 74.286 75.286 3.5185 0 0 0 0.39518 1 16537 16537 1.8442 0.36234 1 + 14604 27154 9387 9393 17864 17864 0.05534707989636445 IRIHMLWCK 9 Unmodified _IRIHMLWCK_ 0 0 0 REV__L1MC5a_dup3676|chr3:152325848-152326223:-|3.726807919036175|0.0943929572387023|5.3|151.0|4|1|sense REV__L1MC5a_dup3676|chr3:152325848-152326223:-|3.726807919036175|0.0943929572387023|5.3|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 600.3305053710938 2 600.330639 1198.64672 NaN NaN NaN NaN NaN NaN NaN 71.404 1 74.931 74.431 75.431 3.5266 0 0 0 0.39518 1 16579 16579 1.8442 0.36234 1 + 14605 27154 9387 9393 17865 17865 0.05534707989636445 IRIKIKFYKI 10 Unmodified _IRIKIKFYKI_ 0 0 0 REV__Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|46|2|sense REV__Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|46|2|sense MSMS UPN48_class_I_Rep_1 5 441.29736328125 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 84.861 1 88.459 87.959 88.959 3.5984 0 0 0 0.53105 1 20309 20309 0.15932 0 1 + 14606 32574 9388 9394 17866 17866 0.21696544455426192 IRIKIKFYKI 10 Unmodified _IRIKIKFYKI_ 0 0 0 REV__Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|46|2|sense REV__Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|46|2|sense MSMS UPN48_class_I_Rep_3 7 441.2974548339844 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 78.594 1 82.216 81.716 82.716 3.6216 0 0 0 0.53105 1 18607 18607 0.15932 0 1 + 14607 32574 9388 9394 17867 17867 0.21696544455426192 IRIKIKFYKI 10 Unmodified _IRIKIKFYKI_ 0 0 0 REV__Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|46|2|sense REV__Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|46|2|sense MSMS UPN48_class_I_Rep_3 7 441.2973327636719 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 98.213 1 102.12 101.62 102.62 3.9022 0 0 0 0.53105 1 23275 23275 0.15932 0 1 + 14608 32574 9388 9394 17868 17868 0.21696544455426192 IRILKEEW 8 Unmodified _IRILKEEW_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS UPN47_class_I_Rep_1 2 543.818115234375 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 23.537 1 27.251 26.751 27.751 3.7136 0 0 0 0.40746 1 2926 2926 0.69038 0 1 + 14609 19845;32023 9389 9395 17869 17869 0.08394308748324875 IRIVKIVIIP 10 Unmodified _IRIVKIVIIP_ 0 0 0 L1MD_dup1901|chr3:182854887-182856137:+|1.1735624954406574|0.0561414301128186|4.39|151.0|41|3|sense L1MD_dup1901|chr3:182854887-182856137:+|1.1735624954406574|0.0561414301128186|4.39|151.0|41|3|sense L1MD_dup1901|chr3:182854887-182856137:+|1.1735624954406574|0.0561414301128186|4.39|151.0|41|3|sense MSMS UPN46_class_I_Rep_3 1 582.6288452148438 2 582.415552 1162.81655 NaN NaN NaN NaN NaN NaN NaN 61.629 1 61.629 61.129 62.129 0 0 0 0 0.53105 1 13727 13727 0.45834 0.45834 1 14610 11870 9390 9396 17870 17870 0.2416547053535396 IRKFKNLST 9 Unmodified _IRKFKNLST_ 0 0 0 REV__L1MA9_dup16157|chr22:46837139-46837781:+|1.0389676835566717|0.0077517902388584|7.07|151.0|3|1|sense REV__L1MA9_dup16157|chr22:46837139-46837781:+|1.0389676835566717|0.0077517902388584|7.07|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.837646484375 2 553.837665 1105.66078 0.060233 3.3359E-05 -0.31554 -0.00017476 -0.25531 -0.0001414 553.8374410226396 42.694 0.93127 46.381 46.061 46.992 3.6875 114 65 2 0 0 0 0.47493 1 8658 8658 3.2813 0 1 139630 + 14611 25377 9391 9397 17871 17871 0.11217400013924816 IRKKLRRKKRR 11 Unmodified _IRKKLRRKKRR_ 0 0 0 REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.1241455078125 3 513.361976 1537.0641 NaN NaN NaN NaN NaN NaN NaN 74.658 1 74.658 74.158 75.158 0 0 0 0 0.38417 1 17328 17328 0 0 1 + 14612 20235 9392 9398 17872 17872 0.3170503724647915 IRKKSGYSN 9 Unmodified _IRKKSGYSN_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|158|3|sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|158|3|sense MSMS UPN46_class_I_Rep_3 1 526.7819213867188 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 111.56 1 111.56 111.06 112.06 0 0 0 0 0.39518 1 27514 27514 1.8442 1.0506 1 + 14613 29081 9393 9399 17873 17873 0.05371663566097595 IRKRTQRH 8 Unmodified _IRKRTQRH_ 0 0 0 HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|5|1|sense HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|5|1|sense HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 547.8379516601562 2 547.836323 1093.65809 0.3567 0.00019541 1.9841 0.001087 2.3408 0.0012824 547.8374839875783 48.714 0.23289 52.343 52.228 52.461 3.6291 20 17 2 0 0 0 0.82752 1 9707 9707 4.3292 0 1 48142 14614 7849 9394 9400 17874 17874 0.11500989399655737 IRKTTARA 8 Unmodified _IRKTTARA_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|23|2|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.7879943847656 2 458.787976 915.561398 0.20881 9.5797E-05 -0.081526 -3.7403E-05 0.12728 5.8394E-05 458.78785333289227 88.09 0.15076 88.09 88.06 88.21 0 22 11 2 0 0 0 0.82752 1 21156 21156 0.69038 0.69038 1 483380 + 14615 28544 9395 9401 17875 17875 0.10024002119826037 IRKYGHVW 8 Unmodified _IRKYGHVW_ 0 0 0 REV__ENSG00000183476|ENST00000328828|SH2D7 REV__ENSG00000183476|ENST00000328828|SH2D7 MSMS UPN46_class_I_Rep_3 1 529.799560546875 2 529.798343 1057.58213 NaN NaN NaN NaN NaN NaN NaN 17.231 1 17.231 16.731 17.731 0 0 0 0 0.40738 1 1325 1325 0.79363 0.10326 1 + 14616 20788 9396 9402 17876 17876 0.05564592499490573 IRLLLRLLTES 11 Unmodified _IRLLLRLLTES_ 0 0 0 REV__nc|ENSG00000204147|P0C7U1|ASAH2B REV__nc|ENSG00000204147|P0C7U1|ASAH2B MSMS UPN46_class_I_Rep_3 1 442.7398376464844 3 442.953767 1325.83947 NaN NaN NaN NaN NaN NaN NaN 58.133 1 58.133 57.633 58.633 0 0 0 0 0.38417 1 12780 12780 1.2148 0.70888 1 + 14617 32096 9397 9403 17877 17877 0.18958444862187207 IRLRVHFCLL 10 Unmodified _IRLRVHFCLL_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|272|3|anti-sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|272|3|anti-sense MSMS UPN48_class_I_Rep_1 5 635.385498046875 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 73.588 1 77.069 76.569 77.569 3.4812 0 0 0 0.53105 1 17349 17349 0.45834 0 1 + 14618 24954 9398 9404 17878 17878 0.13034001195546807 IRLTVIPITPK 11 Unmodified _IRLTVIPITPK_ 0 0 0 REV__L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|20|2|sense REV__L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 625.914306640625 2 625.913373 1249.81219 NaN NaN NaN NaN NaN NaN NaN 62.152 1 62.152 61.652 62.652 0 0 0 0 0.38417 1 13880 13880 1.1933 0.735 1 + 14619 27241 9399 9405 17879 17879 0.19727961321768817 IRLTVWFIF 9 Unmodified _IRLTVWFIF_ 0 0 0 nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4 nc|ENSG00000205213|Q9BXB1-2|LGR4 nc|ENSG00000205213|Q9BXB1-2|LGR4 MSMS UPN48_class_I_Rep_3 7 597.8562622070312 2 597.855327 1193.6961 NaN NaN NaN NaN NaN NaN NaN 84.81 1 88.56 88.06 89.06 3.7494 0 0 0 0.39518 1 20122 20122 1.8442 0 1 14620 5553 9400 9406 17880 17880 0.1070006254171858 IRLVHHDDC 9 Unmodified _IRLVHHDDC_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MSMS UPN47_class_I_Rep_2 3 554.273193359375 2 554.271832 1106.52911 NaN NaN NaN NaN NaN NaN NaN 89.021 1 92.473 91.973 92.973 3.4525 0 0 0 0.4007 1 22123 22123 0.52476 0 1 14621 4147 9401 9407 17881 17881 -0.01989153345448358 IRLVMRWYI 9 Unmodified _IRLVMRWYI_ 0 0 0 REV__L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|114|2|anti-sense REV__L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|114|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 624.8738403320312 2 625.365536 1248.71652 0.43012 0.00026898 1.1035 0.00069006 1.5336 0.00095905 625.3659364902918 91.364 0.76398 94.99 94.735 95.499 3.626 199 109 3 0 0 0 0.12462 1 21907 21907 1.8442 0 1 12429000 + 14622 26927 9402 9408 17882 17882 0.10210909929924128 IRMALYIT 8 Unmodified _IRMALYIT_ 0 0 0 HAL1_dup20387|chr17:39366450-39366882:-|1.291493543897876|0.0080294891186619|7.33|151.0|3|1|sense HAL1_dup20387|chr17:39366450-39366882:-|1.291493543897876|0.0080294891186619|7.33|151.0|3|1|sense HAL1_dup20387|chr17:39366450-39366882:-|1.291493543897876|0.0080294891186619|7.33|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 490.78253173828125 2 490.783513 979.552473 NaN NaN NaN NaN NaN NaN NaN 54.704 1 57.889 57.389 58.389 3.1856 0 0 0 0.4044 1 12443 12443 4.756 0 1 14623 7861 9403 9409 17883 17883 0.06187892439129428 IRMNKILRHK 10 Unmodified _IRMNKILRHK_ 0 0 0 L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|57|3|sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|57|3|sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|57|3|sense MSMS UPN48_class_I_Rep_3 7 436.9398193359375 3 436.939686 1307.79723 NaN NaN NaN NaN NaN NaN NaN 46.621 1 50.257 49.757 50.757 3.6363 0 0 0 0.53105 1 9062 9062 0.69767 0 1 14624 10971 9404 9410 17884 17884 0.15564190972781944 IRMRCKRW 8 Unmodified _IRMRCKRW_ 0 0 0 REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4;REV__ENSG00000113504|ENST00000264930|SLC12A7 REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4 MSMS UPN48_class_I_Rep_3 7 574.8201904296875 2 574.81823 1147.62191 NaN NaN NaN NaN NaN NaN NaN 71.705 1 75.232 74.732 75.732 3.5266 0 0 0 0.40746 1 16670 16670 0.69038 0.088878 1 + 14625 18792;18509 9405 9411 17885 17885 0.05400072906923015 IRMRQVWRSHS 11 Unmodified _IRMRQVWRSHS_ 0 0 0 MLT1D_dup109|chr1:10143410-10143684:-|1.1761044452124725|0.0566635831365767|4.38|151.0|16|2|anti-sense MLT1D_dup109|chr1:10143410-10143684:-|1.1761044452124725|0.0566635831365767|4.38|151.0|16|2|anti-sense MLT1D_dup109|chr1:10143410-10143684:-|1.1761044452124725|0.0566635831365767|4.38|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.9300842285156 3 485.92985 1454.76772 NaN NaN NaN NaN NaN NaN NaN 37.066 1 40.769 40.269 41.269 3.7021 0 0 0 0.38417 1 6301 6301 0.50596 0 1 14626 16324 9406 9412 17886 17886 0.058526269566527844 IRNKAAIN 8 Unmodified _IRNKAAIN_ 0 0 0 L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|101|2|anti-sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|101|2|anti-sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|101|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.2748107910156 2 450.274701 898.534849 0.18582 8.367E-05 -0.20899 -9.4103E-05 -0.023169 -1.0432E-05 450.2745640965658 88.09 0.1671 88.09 88.06 88.227 0 36 13 3 0 0 0 0.82752 1 21153 21153 0.69038 0 1 897760 14627 11297 9407 9413 17887 17887 0.08152313228492858 IRNKAAIN 8 Unmodified _IRNKAAIN_ 0 0 0 L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|101|2|anti-sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|101|2|anti-sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|101|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 450.274701 898.534849 0.18582 8.367E-05 -0.20899 -9.4103E-05 -0.023169 -1.0432E-05 450.2745640965658 88.09 0.1671 88.09 88.06 88.227 0 0.026422 1.4053E-05 NaN 0.69038 36 13 3 NaN NaN NaN NaN 0 NaN NaN 0 897760 14628 11297 9407 9413 0.08152313228492858 IRNKAKIVA 9 Unmodified _IRNKAKIVA_ 0 0 0 L1MD_dup2582|chr5:43034954-43035725:-|1.1125469404993902|0.0848795922438914|3.71|151.0|8|1|sense L1MD_dup2582|chr5:43034954-43035725:-|1.1125469404993902|0.0848795922438914|3.71|151.0|8|1|sense L1MD_dup2582|chr5:43034954-43035725:-|1.1125469404993902|0.0848795922438914|3.71|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.8345642089844 2 506.834926 1011.6553 0.24316 0.00012324 -0.1916 -9.7111E-05 0.051557 2.6131E-05 506.83474329909467 53.377 1.1642 56.897 56.527 57.691 3.5192 139 84 3 0 0 0 0.3898 1 11276 11276 8.5933 0 1 517840 14629 11873 9408 9414 17888 17888 0.1499372122210616 IRNKIEKL 8 Unmodified _IRNKIEKL_ 0 0 0 REV__L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|45|2|sense REV__L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.3266296386719 2 507.326934 1012.63931 0.22423 0.00011376 -0.30924 -0.00015689 -0.085014 -4.313E-05 507.32669418180666 43.986 0.77041 47.499 47.31 48.081 3.5132 98 55 2 0 0 0 0.82752 1 8334 8334 18.146 0 1 173630 + 14630 25655 9409 9415 17889 17889 0.1335001498522388 IRNLYLEY 8 Unmodified _IRNLYLEY_ 0 0 0 L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|46|3|sense L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|46|3|sense L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|46|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.2952880859375 2 542.295299 1082.57605 0.38677 0.00020974 -0.20269 -0.00010992 0.18408 9.9825E-05 542.2950901378747 48.342 0.5125 51.866 51.624 52.136 3.5239 55 32 2 0 0 0 0.82752 1 9612 9612 5.7604 0 1 150240 14631 10857 9410 9416 17890 17890 0.03806029477323136 IRNRRATR 8 Unmodified _IRNRRATR_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|69|2|sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|69|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 521.8219604492188 2 521.820673 1041.62679 0.27713 0.00014461 3.1569 0.0016473 3.434 0.0017919 522.3241346866315 107.6 0.18127 111.23 111.12 111.3 3.6313 31 23 2 0 0 0 0.82752 1 25940 25940 15.847 4.2069 1 2337200 + 14632 26499 9411 9417 17891 17891 0.1076441636553227 IRNVNLDWED 10 Unmodified _IRNVNLDWED_ 0 0 0 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 MULTI-MSMS UPN48_class_I_Rep_1 5 637.8146362304688 2 637.312209 1272.60986 0.4246 0.0002706 -0.24785 -0.00015795 0.17676 0.00011265 637.3119536419745 48.48 0.30436 52.004 51.849 52.154 3.5239 30 19 2 0 0 0 0.56078 2 9673 9673;9704 3.2813 0 1 134300 14633 16808 9412 9418 17892;17893 17892 -0.015535938215862188 IRNVNLDWED 10 Unmodified _IRNVNLDWED_ 0 0 0 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 MULTI-SECPEP UPN48_class_I_Rep_1 5 637.3121948242188 2 637.312209 1272.60986 0.4246 0.0002706 -0.24785 -0.00015795 0.17676 0.00011265 637.3119536419745 48.48 0.30436 52.004 51.849 52.154 3.5239 30 19 2 0 0 0 0.84575 1 9660 9660 3.2813 0 1 134300 14634 16808 9412 9418 17894 17894 -0.015535938215862188 IRNVNLDWED 10 Unmodified _IRNVNLDWED_ 0 0 0 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 637.312209 1272.60986 0.40158 0.00025593 0.20875 0.00013304 0.61033 0.00038897 637.3122377092092 48.213 0.34646 51.949 51.828 52.175 3.7361 -0.075059 0.00026326 NaN 3.2813 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 118070 14635 16808 9412 9418 -0.015535938215862188 IRNVNLDWED 10 Unmodified _IRNVNLDWED_ 0 0 0 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 nc|ENSG00000204904|Q5VT33|LINC01545 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 637.312209 1272.60986 0.5385 0.00034319 0.18029 0.0001149 0.71879 0.00045809 637.3120526342962 48.485 0.30334 52.118 51.998 52.301 3.6339 0.094716 0.00022698 NaN 3.2813 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 117750 14636 16808 9412 9418 -0.015535938215862188 IRPAKWQFC 9 Unmodified _IRPAKWQFC_ 0 0 0 REV__L1PB4_dup2932|chr7:8035228-8038110:+|1.6947298308557943|0.0413179801005504|5.36|151.0|9|1|sense REV__L1PB4_dup2932|chr7:8035228-8038110:+|1.6947298308557943|0.0413179801005504|5.36|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 574.8060302734375 2 574.805311 1147.59607 NaN NaN NaN NaN NaN NaN NaN 30.473 1 33.955 33.455 34.455 3.4821 0 0 0 0.39428 1 5027 5027 2.0598 0.21551 1 + 14637 30584 9413 9419 17895 17895 0.028175019362834064 IRPLQRRQT 9 Unmodified _IRPLQRRQT_ 0 0 0 HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|60|3|anti-sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|60|3|anti-sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|60|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.8583374023438 2 584.357088 1166.69962 0.42567 0.00024874 -0.8154 -0.00047648 -0.38973 -0.00022774 584.356413523325 83.556 0.085144 87.143 87.078 87.163 3.5871 11 9 2 0 0 0 0.50088 1 19986 19986 0.52476 0 1 45255 14638 8054 9414 9420 17896 17896 0.12294125368293862 IRPRKRKMY 9 Unmodified _IRPRKRKMY_ 0 0 0 REV__L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|43|3|sense REV__L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|43|3|sense MSMS UPN46_class_I_Rep_3 1 624.319580078125 2 624.379509 1246.74446 NaN NaN NaN NaN NaN NaN NaN 56.684 1 56.684 56.184 57.184 0 0 0 0 0.4007 1 12378 12378 0.52476 0 1 + 14639 26687 9415 9421 17897 17897 0.13096232910015715 IRPRVHVL 8 Unmodified _IRPRVHVL_ 0 0 0 THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|35|3|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|35|3|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|35|3|sense MSMS UPN46_class_I_Rep_3 1 495.3229064941406 2 495.321986 988.629418 NaN NaN NaN NaN NaN NaN NaN 20.68 1 20.68 20.18 21.18 0 0 0 0 0.40746 1 2191 2191 0.69038 0 1 14640 32919 9416 9422 17898 17898 0.13464871770509035 IRQAESLLR 9 Unmodified _IRQAESLLR_ 0 0 0 REV__ENSG00000176978|ENST00000371579|DPP7 REV__ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS UPN48_class_I_Rep_2 6 543.3250122070312 2 543.324922 1084.63529 0.46344 0.0002518 -0.44541 -0.000242 0.018035 9.799E-06 543.3245092680344 35.068 0.87145 38.742 38.421 39.292 3.6735 165 84 3 0 0 0 0.39745 1 5851 5851 8.1555 8.1555 1 336680 + 14641 20605 9417 9423 17899 17899 0.09635925491488706 IRQDKEIKRLQ 11 Unmodified _IRQDKEIKRLQ_ 0 0 0 L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 476.2872009277344 3 476.287808 1425.8416 -0.386 -0.00018385 -0.70047 -0.00033363 -1.0865 -0.00051747 476.2873938317759 14.587 0.49628 18.062 17.897 18.393 3.475 107 56 3 0 0 0 0.64331 1 610 610 3.8459 0 1 84531 14642 14747 9418 9424 17900 17900 0.14570873599950573 IRQDKEIKRLQ 11 Unmodified _IRQDKEIKRLQ_ 0 0 0 L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 476.287808 1425.8416 -0.386 -0.00018385 -0.70047 -0.00033363 -1.0865 -0.00051747 476.2873938317759 14.587 0.49628 18.062 17.897 18.393 3.475 -0.044073 -7.7598E-05 NaN 3.8459 107 56 3 NaN NaN NaN NaN 0 NaN NaN 0 84531 14643 14747 9418 9424 0.14570873599950573 IRQDKEIKRLQ 11 Unmodified _IRQDKEIKRLQ_ 0 0 0 L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 476.287808 1425.8416 -0.26358 -0.00012554 -0.78707 -0.00037487 -1.0507 -0.00050041 476.2872908455312 14.735 0.35242 18.122 17.932 18.284 3.3871 0.01551 -0.00020133 NaN 3.8459 95 42 3 NaN NaN NaN NaN 0 NaN NaN 0 81054 14644 14747 9418 9424 0.14570873599950573 IRQKKLMHK 9 Unmodified _IRQKKLMHK_ 0 0 0 ENSG00000123171|ENST00000242819|CCDC70 ENSG00000123171|ENST00000242819|CCDC70 ENSG00000123171|ENST00000242819|CCDC70 MULTI-SECPEP UPN48_class_I_Rep_1 5 590.8672485351562 2 591.36861 1180.72267 0.41007 0.0002425 0.71332 0.00042183 1.1234 0.00066433 591.3689164579583 94.918 0.047028 98.535 98.494 98.541 3.6167 8 5 2 0 0 0 0.12444 1 22839 22839 2.0598 2.0598 1 101180 14645 2411 9419 9425 17901 17901 0.1395342816140328 IRQKKLMHK 9 Unmodified _IRQKKLMHK_ 0 0 0 ENSG00000123171|ENST00000242819|CCDC70 ENSG00000123171|ENST00000242819|CCDC70 ENSG00000123171|ENST00000242819|CCDC70 MULTI-MATCH UPN47_class_I_Rep_3 4 2 591.36861 1180.72267 0.50768 0.00030023 0.039873 2.358E-05 0.54756 0.00032381 591.3688050575767 95.373 0.29906 98.782 98.575 98.874 3.4095 0.12387 -4.9469E-05 NaN 2.0598 68 42 2 NaN NaN NaN NaN 0 NaN NaN 0 404680 14646 2411 9419 9425 0.1395342816140328 IRQKREKERKT 11 Unmodified _IRQKREKERKT_ 0 0 0 REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|19|2|sense REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|19|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.2994689941406 3 491.298707 1470.87429 0.15622 7.6751E-05 0.76701 0.00037683 0.92324 0.00045358 491.2989557238315 105.37 0.058983 109 108.97 109.02 3.6277 13 7 2 0 0 0 0.68178 1 25387 25387 0.36667 0.27183 1 410850 + 14647 24182 9420 9426 17902 17902 0.15769080722816398 IRQKREKERKT 11 Unmodified _IRQKREKERKT_ 0 0 0 REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|19|2|sense REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|19|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 491.298707 1470.87429 0.15622 7.6751E-05 0.76701 0.00037683 0.92324 0.00045358 491.2989557238315 105.37 0.058983 109 108.97 109.02 3.6277 -0.15206 -0.00053744 NaN 0.36667 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 410850 + 14648 24182 9420 9426 0.15769080722816398 IRQKREKERKT 11 Unmodified _IRQKREKERKT_ 0 0 0 REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|19|2|sense REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|19|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 491.298707 1470.87429 0.26606 0.00013071 1.1324 0.00055633 1.3984 0.00068704 491.2992192658404 105.62 1.06 109.31 108.9 109.96 3.6901 0.15206 1.0397E-06 NaN 0.36667 500 150 5 NaN NaN NaN NaN 0 NaN NaN 0 8903500 + 14649 24182 9420 9426 0.15769080722816398 IRQRWRNLKPK 11 Unmodified _IRQRWRNLKPK_ 0 0 0 ENST00000389054.7_1_5:140954697-140955852:-|nuORF ENST00000389054.7_1_5:140954697-140955852:-|nuORF ENST00000389054.7_1_5:140954697-140955852:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 498.9752502441406 3 498.975788 1493.90553 -0.29623 -0.00014781 -0.88582 -0.000442 -1.182 -0.00058981 498.9753193878538 12.708 0.45227 12.708 12.62 13.072 0 65 38 2 0 0 0 0.67356 2 183 183;227 1.1098 0.70149 1 207750 14650 6508 9421 9427 17903;17904 17903 0.1783369854756529 IRQWLWVM 8 Unmodified _IRQWLWVM_ 0 0 0 REV__L1M5_dup37403|chr11:68605333-68605688:+|1.903863004770021|0.4927278464669244|1.95|151.0|1|1|sense REV__L1M5_dup37403|chr11:68605333-68605688:+|1.903863004770021|0.4927278464669244|1.95|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 566.3092041015625 2 566.310229 1130.60591 NaN NaN NaN NaN NaN NaN NaN 105.65 1 109.39 108.89 109.89 3.7395 0 0 0 0.40738 1 25920 25920 0.79363 0.10326 1 + 14651 24666 9422 9428 17905 17905 0.045826899416624656 IRQWLWVM 8 Unmodified _IRQWLWVM_ 0 0 0 REV__L1M5_dup37403|chr11:68605333-68605688:+|1.903863004770021|0.4927278464669244|1.95|151.0|1|1|sense REV__L1M5_dup37403|chr11:68605333-68605688:+|1.903863004770021|0.4927278464669244|1.95|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 566.3095703125 2 566.310229 1130.60591 NaN NaN NaN NaN NaN NaN NaN 105.68 1 109.21 108.71 109.71 3.5308 0 0 0 0.40738 1 25865 25865 0.79363 0.10326 1 + 14652 24666 9422 9428 17906 17906 0.045826899416624656 IRRDKSARN 9 Unmodified _IRRDKSARN_ 0 0 0 REV__ENST00000396403.8_1_19:53994954-53995710:+|nuORF REV__ENST00000396403.8_1_19:53994954-53995710:+|nuORF MSMS UPN46_class_I_Rep_3 1 558.3225708007812 2 558.323245 1114.63194 NaN NaN NaN NaN NaN NaN NaN 102.45 1 102.45 101.95 102.95 0 0 0 0 0.39518 1 25000 25000 1.8442 0 1 + 14653 22124 9423 9429 17907 17907 0.07920675437503633 IRRELPQIF 9 Unmodified _IRRELPQIF_ 0 0 0 HAL1_dup19016|chr15:49936193-49937032:-|1.593637744048156|0.0071605644552293|7.8|151.0|29|3|sense HAL1_dup19016|chr15:49936193-49937032:-|1.593637744048156|0.0071605644552293|7.8|151.0|29|3|sense HAL1_dup19016|chr15:49936193-49937032:-|1.593637744048156|0.0071605644552293|7.8|151.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 586.3504028320312 2 586.35094 1170.68733 0.5167 0.00030297 0.25117 0.00014728 0.76787 0.00045024 586.8527093477431 64.433 0.5422 67.907 67.766 68.308 3.4743 71 39 2 0 0 0 0.43153 1 14584 14584 6.2058 0.47393 1 238660 14654 7847 9424 9430 17908 17908 0.10881088905262004 IRRISQTYQ 9 Unmodified _IRRISQTYQ_ 0 0 0 nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525-2|ANXA4 nc|ENSG00000196975|P09525-2|ANXA4 MSMS UPN47_class_I_Rep_2 3 582.815673828125 2 582.827829 1163.64111 NaN NaN NaN NaN NaN NaN NaN 65.152 1 68.407 67.907 68.907 3.2556 0 0 0 0.38639 1 15569 15569 3.9444 0.3479 1 14655 5341 9425 9431 17909 17909 0.06583024003180071 IRRQKRKCRKK 11 Unmodified _IRRQKRKCRKK_ 0 0 0 L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 500.6575927734375 3 500.656172 1498.94669 NaN NaN NaN NaN NaN NaN NaN 99.051 1 99.051 98.551 99.551 0 0 0 0 0.38417 1 24122 24122 0.094841 0.021578 1 14656 11473 9426 9432 17910 17910 0.21717136315373864 IRRRDWDL 8 Unmodified _IRRRDWDL_ 0 0 0 REV__ENSG00000128408|ENST00000614167|RIBC2 REV__ENSG00000128408|ENST00000614167|RIBC2 MSMS UPN47_class_I_Rep_3 4 565.7500610351562 2 565.314889 1128.61522 NaN NaN NaN NaN NaN NaN NaN 27.131 1 30.473 29.973 30.973 3.3422 0 0 0 0.40746 1 4076 4076 0.69038 0.088878 1 + 14657 18896 9427 9433 17911 17911 0.05606174551530785 IRRTLILEER 10 Unmodified _IRRTLILEER_ 0 0 0 REV__L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|79|2|sense REV__L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|79|2|sense MSMS UPN48_class_I_Rep_1 5 649.899169921875 2 649.898786 1297.78302 NaN NaN NaN NaN NaN NaN NaN 94.238 1 97.859 97.359 98.359 3.6208 0 0 0 0.53105 1 22673 22673 2.7352 1.2533 1 + 14658 30216 9428 9434 17912 17912 0.14603817025499666 IRRVYVWRK 9 Unmodified _IRRVYVWRK_ 0 0 0 REV__L1MC3_dup6025|chr8:38221816-38222842:-|1.9594123909661547|0.4439357348960778|2.14|151.0|15|2|sense REV__L1MC3_dup6025|chr8:38221816-38222842:-|1.9594123909661547|0.4439357348960778|2.14|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 638.3963012695312 2 638.393474 1274.77239 NaN NaN NaN NaN NaN NaN NaN 64.147 1 64.147 63.647 64.647 0 0 0 0 0.4007 1 14421 14421 0.52476 0.066424 1 + 14659 26768 9429 9435 17913 17913 0.14599879161733043 IRSDPYKTL 9 Unmodified _IRSDPYKTL_ 0 0 0 REV__nc|ENSG00000153885|Q96SI1-2|KCTD15 REV__nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MSMS UPN48_class_I_Rep_1 5 547.3069458007812 2 546.806031 1091.59751 0.4386 0.00023983 -0.11744 -6.4219E-05 0.32116 0.00017561 546.8061046760699 46.459 0.55463 49.979 49.754 50.308 3.5192 42 34 2 0 0 0 0.26468 1 9062 9062 16.149 3.1066 1 151770 + 14660 19720 9430 9436 17914 17914 0.05537414506034111 IRSSYIRVL 9 Unmodified _IRSSYIRVL_ 0 0 0 ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS UPN47_class_I_Rep_1 2 553.8377075195312 2 553.837665 1105.66078 0.060233 3.3359E-05 -0.31554 -0.00017476 -0.25531 -0.0001414 553.8374410226396 42.694 0.93127 46.381 46.061 46.992 3.6875 114 65 2 0 0 0 0.30497 3 8699 8699;8740;8783 13.615 5.4593 1 139630 14661 1489 9431 9437 17915;17916;17917 17915 0.11217400013947554 IRSSYIRVL 9 Unmodified _IRSSYIRVL_ 0 0 0 ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS UPN47_class_I_Rep_2 3 553.837646484375 2 553.837665 1105.66078 0.12602 6.9796E-05 -0.21711 -0.00012024 -0.091088 -5.0448E-05 553.8375788238002 43.356 0.98724 46.714 46.238 47.226 3.358 78 62 2 0 0 0 0.24411 2 8905 8867;8905 17.443 5.9479 1 110880 14662 1489 9431 9437 17918;17919 17919 0.11217400013947554 IRSSYIRVL 9 Unmodified _IRSSYIRVL_ 0 0 0 ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS UPN47_class_I_Rep_3 4 553.8365478515625 2 553.837665 1105.66078 0.13888 7.6916E-05 -0.33047 -0.00018303 -0.1916 -0.00010611 553.8375125588135 43.429 0.86548 46.671 46.338 47.203 3.2419 83 51 2 0 0 0 0.2924 3 9036 8945;9036;9079 14.405 5.66 1 91182 14663 1489 9431 9437 17920;17921;17922 17921 0.11217400013947554 IRTKNPVSNYS 11 Unmodified _IRTKNPVSNYS_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 639.8439331054688 2 639.843676 1277.6728 0.56028 0.00035849 -0.45027 -0.0002881 0.11001 7.0387E-05 639.8435882091574 91.605 0.79584 95.311 94.906 95.701 3.7053 621 112 8 0 0 0 0.52578 1 22802 22802 7.1017 1.3699 1 35873000 14664 8512 9432 9438 17923 17923 0.04506971966475248 IRTKNPVSNYS 11 Unmodified _IRTKNPVSNYS_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 639.8435668945312 2 639.843676 1277.6728 0.50832 0.00032525 -0.10548 -6.7489E-05 0.40284 0.00025776 639.8436310795774 91.7 0.79927 95.101 94.73 95.53 3.401 577 117 6 0 0 0 0.52578 1 22973 22973 7.1017 1.3699 1 13750000 14665 8512 9432 9438 17924 17924 0.04506971966475248 IRTKNPVSNYS 11 Unmodified _IRTKNPVSNYS_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 640.345458984375 2 639.843676 1277.6728 0.4381 0.00028032 -0.41773 -0.00026728 0.020374 1.3036E-05 639.8436434823143 91.386 0.9293 95.012 94.605 95.534 3.626 795 130 7 0 0 0 0.52578 1 22081 22081 7.1017 1.3699 1 94926000 14666 8512 9432 9438 17925 17925 0.04506971966475248 IRTKNWNESL 10 Unmodified _IRTKNWNESL_ 0 0 0 REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|70|2|sense REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|70|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 420.8947448730469 3 420.894688 1259.66223 0.082148 3.4575E-05 0.15924 6.7025E-05 0.24139 0.0001016 420.89463914857623 91.333 0.50815 95.088 94.771 95.279 3.7554 136 76 2 0 0 0 0.53513 1 21716 21716 7.4771 0.43998 1 5916500 + 14667 30510 9433 9439 17926 17926 0.04278989312047088 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN47_class_I_Rep_1 2 453.2813720703125 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.023 1 53.651 53.151 54.151 3.6285 0 0 0 0.38478 1 10933 10933 4.3292 0 1 + 14668 17714 9434 9440 17927 17927 0.0933438537664415 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN47_class_I_Rep_1 2 453.2817687988281 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.71 1 54.339 53.839 54.839 3.6285 0 0 0 0.39428 1 11143 11143 2.0598 0 1 + 14669 17714 9434 9440 17928 17928 0.0933438537664415 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN47_class_I_Rep_2 3 453.28192138671875 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.866 1 54.205 53.705 54.705 3.3386 0 0 0 0.39428 1 11218 11218 2.0598 0 1 + 14670 17714 9434 9440 17929 17929 0.0933438537664415 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN47_class_I_Rep_3 4 453.2815246582031 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.49 1 53.716 53.216 54.216 3.2262 0 0 0 0.39428 1 11159 11159 2.0598 0 1 + 14671 17714 9434 9440 17930 17930 0.0933438537664415 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN47_class_I_Rep_3 4 453.2818298339844 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.661 1 53.877 53.377 54.377 3.2163 0 0 0 0.38299 1 11211 11211 4.756 0 1 + 14672 17714 9434 9440 17931 17931 0.0933438537664415 IRVGPPVAP 9 Unmodified _IRVGPPVAP_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN47_class_I_Rep_3 4 453.28204345703125 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 51.166 1 54.383 53.883 54.883 3.2163 0 0 0 0.39428 1 11364 11364 2.0598 0 1 + 14673 17714 9434 9440 17932 17932 0.0933438537664415 IRVLQTFT 8 Unmodified _IRVLQTFT_ 0 0 0 ENST00000464990.1_1_3:33425426-33427097:+|nuORF ENST00000464990.1_1_3:33425426-33427097:+|nuORF ENST00000464990.1_1_3:33425426-33427097:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 489.2926940917969 2 489.292559 976.570566 -0.45682 -0.00022352 0.18864 9.23E-05 -0.26818 -0.00013122 489.2926713280961 29.205 0.64581 32.528 32.291 32.937 3.3235 66 51 2 0 0 0 0.82752 1 4676 4676 2.3027 1.6124 1 59354 14674 6886 9435 9441 17933 17933 0.0813435068552053 IRVPIHAY 8 Unmodified _IRVPIHAY_ 0 0 0 REV__ENST00000553142.5_1_12:58021700-58025915:-|nuORF REV__ENST00000553142.5_1_12:58021700-58025915:-|nuORF MSMS UPN48_class_I_Rep_3 7 484.78802490234375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 39.645 1 43.301 42.801 43.801 3.6557 0 0 0 0.40581 1 6958 6958 2.8892 0.31174 1 + 14675 19139 9436 9442 17934 17934 0.07525787750932977 IRVTYCGLUS 10 Unmodified _IRVTYCGLUS_ 0 0 0 ENSG00000186838|ENST00000335426|SELENOV ENSG00000186838|ENST00000335426|SELENOV ENSG00000186838|ENST00000335426|SELENOV MULTI-MSMS UPN46_class_I_Rep_3 1 581.7454223632812 2 581.745045 1161.47554 0.26065 0.00015163 -0.44843 -0.00026087 -0.18778 -0.00010924 581.7454190873719 30.197 0.67679 30.197 29.9 30.576 0 115 55 3 0 0 0 0.56333 1 4959 4959 0 0 0 231620 14676 5166 9437 9443 17935 17935 -0.09874194402937064 IRVWFKRF 8 Unmodified _IRVWFKRF_ 0 0 0 Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 576.3427124023438 2 576.345461 1150.67637 0.40257 0.00023202 -4.399 -0.0025354 -3.9965 -0.0023033 576.3425169404087 110.51 0.084953 114.14 114.12 114.21 3.6326 10 6 3 0 0 0 0.82752 1 26835 26835 0.69038 0.088878 1 470400 14677 33130 9438 9444 17936 17936 0.10705731321650092 IRVWFKRF 8 Unmodified _IRVWFKRF_ 0 0 0 Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 576.345461 1150.67637 0.63473 0.00036582 -4.9718 -0.0028655 -4.3371 -0.0024997 576.3422765681075 110.82 0.056923 114.34 114.32 114.38 3.5271 0.10062 -0.00057216 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66297 14678 33130 9438 9444 0.10705731321650092 IRVWFKRF 8 Unmodified _IRVWFKRF_ 0 0 0 Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 576.345461 1150.67637 0.40257 0.00023202 -4.399 -0.0025354 -3.9965 -0.0023033 576.3425169404087 110.51 0.084953 114.14 114.12 114.21 3.6326 -0.10107 8.8101E-05 NaN 0.69038 10 6 3 NaN NaN NaN NaN 0 NaN NaN 0 470400 14679 33130 9438 9444 0.10705731321650092 IRVWFKRF 8 Unmodified _IRVWFKRF_ 0 0 0 Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|40|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 576.345461 1150.67637 0.47813 0.00027557 -4.4099 -0.0025416 -3.9317 -0.002266 576.342577103354 110.58 0.063156 114.24 114.21 114.28 3.6654 0.00045233 7.5593E-05 NaN 0.69038 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 614620 14680 33130 9438 9444 0.10705731321650092 IRVYLAVIA 9 Unmodified _IRVYLAVIA_ 0 0 0 REV__ENSG00000267534|ENST00000646641|S1PR2 REV__ENSG00000267534|ENST00000646641|S1PR2 MULTI-MSMS UPN47_class_I_Rep_1 2 509.3262939453125 2 509.326402 1016.63825 0.2347 0.00011954 0.091068 4.6383E-05 0.32577 0.00016592 509.3262998290753 75.034 0.25774 78.428 78.214 78.472 3.3937 54 22 3 0 0 0 0.33654 1 18510 18510 11.64 3.7301 1 504930 + 14681 21413 9439 9445 17937 17937 0.13059800616304074 IRWQKKGH 8 Unmodified _IRWQKKGH_ 0 0 0 L1MC4_dup20177|chr15:56187478-56188578:+|1.5029406021658085|0.0250289481289283|5.91|151.0|38|3|sense L1MC4_dup20177|chr15:56187478-56188578:+|1.5029406021658085|0.0250289481289283|5.91|151.0|38|3|sense L1MC4_dup20177|chr15:56187478-56188578:+|1.5029406021658085|0.0250289481289283|5.91|151.0|38|3|sense MSMS UPN47_class_I_Rep_2 3 526.8078002929688 2 526.809242 1051.60393 NaN NaN NaN NaN NaN NaN NaN 29.264 1 32.756 32.256 33.256 3.4923 0 0 0 0.40604 1 4660 4660 2.5775 0.51773 1 14682 11441 9440 9446 17938 17938 0.08019397248085625 IRYELERMEVT 11 Unmodified _IRYELERMEVT_ 0 0 0 REV__HAL1M8_dup2103|chr22:49864196-49864456:-|1.011264615351425|0.0264238395060256|5.26|151.0|20|3|anti-sense REV__HAL1M8_dup2103|chr22:49864196-49864456:-|1.011264615351425|0.0264238395060256|5.26|151.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.24993896484375 3 480.250143 1437.7286 0.25015 0.00012014 0.24193 0.00011619 0.49208 0.00023632 480.25025284080965 56.232 0.96656 59.532 59.063 60.029 3.3009 129 57 3 0 0 0 0.67462 1 12956 12956 1.0136 1.0136 1 203720 + 14683 23470 9441 9447 17939 17939 0.02724437091751497 IRYHNAITTAN 11 Unmodified _IRYHNAITTAN_ 0 0 0 REV__ENST00000357666.8_1_19:53452950-53453265:-|nuORF REV__ENST00000357666.8_1_19:53452950-53453265:-|nuORF MSMS UPN48_class_I_Rep_1 5 637.3348388671875 2 637.336018 1272.65748 NaN NaN NaN NaN NaN NaN NaN 51.513 1 55.036 54.536 55.536 3.5227 0 0 0 0.38417 1 10632 10632 2.2828 0.43854 1 + 14684 21880 9442 9448 17940 17940 0.03206105169283546 ISACVYTYCC 10 Unmodified _ISACVYTYCC_ 0 0 0 REV__L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|178|3|anti-sense REV__L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|178|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 563.2245483398438 2 563.224313 1124.43407 0.40038 0.0002255 -0.61472 -0.00034622 -0.21434 -0.00012072 563.2242656964125 69.682 1.0094 69.682 69.283 70.292 0 360 108 4 0 0 0 0.38932 2 15992 15992;16133 20.454 2.3186 1 3378500 + 14685 30345 9443 9449 17941;17942 17941 -0.1231659092316022 ISAHKPLLI 9 Unmodified _ISAHKPLLI_ 0 0 0 ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2;ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000008853|ENST00000251822|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 MULTI-MSMS UPN48_class_I_Rep_3 7 496.3185729980469 2 496.318577 990.622602 0.16891 8.3833E-05 -0.10418 -5.1705E-05 0.064734 3.2129E-05 496.31845402844425 43.306 0.81753 46.945 46.623 47.441 3.6385 92 62 2 0 0 0 0.23293 1 8052 8052 18.146 18.146 1 142460 14686 743 9444 9450 17943 17943 0.12691514099276446 ISAIYMDLEIC 11 Unmodified _ISAIYMDLEIC_ 0 0 0 nc|ENSG00000143363|Q86TP1-6|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1 nc|ENSG00000143363|Q86TP1-6|PRUNE1 nc|ENSG00000143363|Q86TP1-6|PRUNE1 MSMS UPN47_class_I_Rep_3 4 635.8071899414062 2 635.806525 1269.5985 NaN NaN NaN NaN NaN NaN NaN 53.737 1 56.932 56.432 57.432 3.1948 0 0 0 0.37149 1 12145 12145 7.609 0 1 14687 16700 9445 9451 17944 17944 -0.025518752315520032 ISAPKTQSY 9 Unmodified _ISAPKTQSY_ 0 0 0 REV__ENST00000341170.4_1_9:100388110-100389693:-|nuORF REV__ENST00000341170.4_1_9:100388110-100389693:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.7653503417969 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 114.91 1 118.54 118.04 119.04 3.6301 0 0 0 0.39518 1 27944 27944 1.8442 0 1 + 14688 21823 9446 9452 17945 17945 0.016094636892944436 ISASASNLDD 10 Unmodified _ISASASNLDD_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_1 2 496.71221923828125 2 496.730186 991.445819 NaN NaN NaN NaN NaN NaN NaN 30.355 1 34.1 33.6 34.6 3.7449 0 0 0 0.53105 1 4952 4952 1.3295 0.5359 1 14689 1187 9447 9453 17946 17946 -0.050246113123193936 ISDISSMSMT 10 Unmodified _ISDISSMSMT_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|272|2|anti-sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|272|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 536.2382202148438 2 536.238475 1070.4624 0.26188 0.00014043 -0.26905 -0.00014427 -0.0071661 -3.8428E-06 536.2383009745017 56.896 0.53072 56.896 56.652 57.183 0 93 60 3 0 0 0 0.36464 1 12413 12413 22.736 4.5899 1 821760 + 14690 24780 9448 9454 17947 17947 -0.07001569742237734 ISDISSMSMT 10 Unmodified _ISDISSMSMT_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|272|2|anti-sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|272|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 536.238475 1070.4624 0.26188 0.00014043 -0.26905 -0.00014427 -0.0071661 -3.8428E-06 536.2383009745017 56.896 0.53072 56.896 56.652 57.183 0 0 0 NaN 22.736 93 60 3 NaN NaN NaN NaN 0 NaN NaN 0 821760 + 14691 24780 9448 9454 -0.07001569742237734 ISDLFIDNY 9 Unmodified _ISDLFIDNY_ 0 0 0 ENSG00000187068|ENST00000335012|C3orf70 ENSG00000187068|ENST00000335012|C3orf70 ENSG00000187068|ENST00000335012|C3orf70 MULTI-MSMS UPN47_class_I_Rep_3 4 550.2692260742188 2 550.268947 1098.52334 0.44672 0.00024582 -0.24285 -0.00013363 0.20387 0.00011218 550.2687705301618 73.391 0.39387 76.628 76.402 76.796 3.2363 45 32 2 0 0 0 0.38714 1 18081 18081 8.7454 0 1 108940 14692 5178 9449 9455 17948 17948 -0.0219797337615546 ISDLHVPVLK 10 Unmodified _ISDLHVPVLK_ 0 0 0 REV__ENSG00000169413|ENST00000304677|RNASE6 REV__ENSG00000169413|ENST00000304677|RNASE6 MULTI-MSMS UPN48_class_I_Rep_2 6 560.8401489257812 2 560.839874 1119.66519 0.399 0.00022377 -0.080384 -4.5082E-05 0.31862 0.00017869 560.8397268702832 46.877 0.61529 50.626 50.279 50.894 3.7494 85 42 3 0 0 0 0.4965 1 9174 9174 12.241 1.4411 1 188830 + 14693 20312 9450 9456 17949 17949 0.11014864436833705 ISDLHVPVLK 10 Unmodified _ISDLHVPVLK_ 0 0 0 REV__ENSG00000169413|ENST00000304677|RNASE6 REV__ENSG00000169413|ENST00000304677|RNASE6 MULTI-MSMS UPN48_class_I_Rep_3 7 560.8158569335938 2 560.839874 1119.66519 0.34357 0.00019269 0.024756 1.3884E-05 0.36833 0.00020657 560.8397771377325 47.073 0.63493 50.709 50.311 50.946 3.6363 64 42 2 0 0 0 0.4965 1 9258 9258 12.241 0.74595 1 215940 + 14694 20312 9450 9456 17950 17950 0.11014864436833705 ISDLVKVTL 9 Unmodified _ISDLVKVTL_ 0 0 0 nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA nc|ENSG00000134333|P00338-3|LDHA nc|ENSG00000134333|P00338-3|LDHA MSMS UPN47_class_I_Rep_1 2 494.3075866699219 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 58.545 1 61.963 61.463 62.463 3.4171 0 0 0 0.3377 1 13527 13527 8.7454 2.5396 1 14695 16687 9451 9457 17951 17951 0.10736084279915303 ISDLVKVTL 9 Unmodified _ISDLVKVTL_ 0 0 0 nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA nc|ENSG00000134333|P00338-3|LDHA nc|ENSG00000134333|P00338-3|LDHA MULTI-MSMS UPN47_class_I_Rep_2 3 494.3086242675781 2 494.307875 986.601197 0.34557 0.00017082 0.62341 0.00030816 0.96898 0.00047897 494.3082935447923 58.764 0.51704 62.046 61.76 62.277 3.2818 38 30 2 0 0 0 0.45441 1 13587 13587 4.897 0 1 56081 14696 16687 9451 9457 17952 17952 0.10736084279915303 ISDLVKVTL 9 Unmodified _ISDLVKVTL_ 0 0 0 nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA nc|ENSG00000134333|P00338-3|LDHA nc|ENSG00000134333|P00338-3|LDHA MSMS UPN47_class_I_Rep_3 4 494.3082580566406 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 58.86 1 62.026 61.526 62.526 3.1658 0 0 0 0.11743 1 13709 13709 21.59 4.4773 1 14697 16687 9451 9457 17953 17953 0.10736084279915303 ISDLVKVTL 9 Unmodified _ISDLVKVTL_ 0 0 0 nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA nc|ENSG00000134333|P00338-3|LDHA nc|ENSG00000134333|P00338-3|LDHA MULTI-MATCH UPN47_class_I_Rep_1 2 2 494.307875 986.601197 0.17344 8.5733E-05 2.1727 0.001074 2.3461 0.0011597 494.3091513469482 58.827 0.1209 62.244 62.163 62.284 3.4171 0.098983 0.0012229 NaN 4.897 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 34261 14698 16687 9451 9457 0.10736084279915303 ISDRLIGIY 9 Unmodified _ISDRLIGIY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS UPN47_class_I_Rep_2 3 525.3029174804688 2 525.303124 1048.5917 0.16761 8.8045E-05 -0.2447 -0.00012854 -0.077087 -4.0494E-05 525.3029092504713 57.624 1.1943 60.915 60.456 61.65 3.2912 177 92 3 0 0 0 0.12096 2 13307 13307;13382 29.841 7.1043 1 365140 14699 2061 9452 9458 17954;17955 17954 0.06934315994385543 ISDRLIGIY 9 Unmodified _ISDRLIGIY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MSMS UPN47_class_I_Rep_3 4 525.3032836914062 2 525.303124 1048.5917 0.26086 0.00013703 -0.39218 -0.00020601 -0.13131 -6.898E-05 525.3028044833712 57.74 0.81554 60.909 60.605 61.421 3.1681 145 62 3 0 0 0 0.088679 1 13454 13454 36.506 8.8774 1 334210 14700 2061 9452 9458 17956 17956 0.06934315994385543 ISDRLIGIY 9 Unmodified _ISDRLIGIY_ 0 0 0 nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF nc|ENSG00000113810|Q9NTJ3-2|SMC4 nc|ENSG00000113810|Q9NTJ3-2|SMC4 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 525.303124 1048.5917 0.26086 0.00013703 -0.39218 -0.00020601 -0.13131 -6.898E-05 525.3028044833712 57.74 0.81554 60.909 60.605 61.421 3.1681 0.025339 -1.5855E-05 NaN 36.506 145 62 3 NaN NaN NaN NaN 0 NaN NaN 0 334210 14701 2061 9452 9458 0.06934315994385543 ISEEGFHYL 9 Unmodified _ISEEGFHYL_ 0 0 0 CAMK2G|p.N337Kfs*45|1|0.35|ENSG00000148660|chr10:73825327-73825328|-/T|frameshift_variant;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;ENSG00000058404|ENST00000395749|CAMK2B CAMK2G|p.N337Kfs*45|1|0.35|ENSG00000148660|chr10:73825327-73825328|-/T|frameshift_variant CAMK2G|p.N337Kfs*45|1|0.35|ENSG00000148660|chr10:73825327-73825328|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 547.7617797851562 2 547.761289 1093.50803 0.39809 0.00021806 -0.061585 -3.3734E-05 0.3365 0.00018432 547.7612080202797 56.132 0.85475 59.611 59.294 60.149 3.4785 111 48 3 0 0 0 0.40174 1 12897 12897 7.9102 0.62092 1 313220 14702 423 9453 9459 17957 17957 -0.03498840173347162 ISEQFTAMF 9 Oxidation (M) _ISEQFTAM(Oxidation (M))F_ ISEQFTAM(1)F ISEQFTAM(69)F 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN48_class_I_Rep_1 5 545.2498168945312 2 545.2497 1088.48485 0.56755 0.00030946 -0.255 -0.00013904 0.31255 0.00017042 545.2494663438682 62.892 0.66101 66.355 65.991 66.652 3.4625 87 43 3 0 0 0 0.011285 1 14083 14083 69.105 36.799 1 269340 14703 5222;5291 9454 9460 17958 17958 160 -0.05585602282326363 ISEQFTAMF 9 Oxidation (M) _ISEQFTAM(Oxidation (M))F_ ISEQFTAM(1)F ISEQFTAM(73)F 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN48_class_I_Rep_2 6 545.2498779296875 2 545.2497 1088.48485 0.53338 0.00029083 -0.042917 -2.3401E-05 0.49046 0.00026743 545.2495334688775 62.733 0.59333 66.206 65.935 66.529 3.4738 87 40 3 0 0 0 0.006828 2 14030 14030;14079 72.968 33.011 1 301430 14704 5222;5291 9454 9460 17959;17960 17959 160 -0.05585602282326363 ISEQFTAMF 9 Oxidation (M) _ISEQFTAM(Oxidation (M))F_ ISEQFTAM(1)F ISEQFTAM(64)F 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN48_class_I_Rep_3 7 545.2496337890625 2 545.2497 1088.48485 0.49285 0.00026872 -0.001233 -6.723E-07 0.49161 0.00026805 545.2496238071183 62.608 0.63596 66.119 65.865 66.501 3.5104 97 44 3 0 0 0 0.019142 3 13934 13896;13934;13959 63.961 31.655 1 301200 14705 5222;5291 9454 9460 17961;17962;17963 17962 160 -0.05585602282326363 ISERQIKIT 9 Unmodified _ISERQIKIT_ 0 0 0 L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|29|3|sense L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|29|3|sense L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.3267822265625 2 544.327131 1086.63971 0.0075956 4.1345E-06 -0.16333 -8.8906E-05 -0.15574 -8.4772E-05 544.3270168584769 37.613 1.2351 41.278 40.897 42.132 3.6652 202 91 3 0 0 0 0.279 1 7276 7276 15.248 0.41021 1 640680 14706 10041 9455 9461 17964 17964 0.09985389914413645 ISERQIKIT 9 Unmodified _ISERQIKIT_ 0 0 0 L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|29|3|sense L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|29|3|sense L1MA7_dup8196|chr20:17983303-17984308:-|1.6801246204435136|0.3475750831141602|2.27|151.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.3270874023438 2 544.327131 1086.63971 0.012828 6.9828E-06 -0.16619 -9.046E-05 -0.15336 -8.3478E-05 544.3269849420462 38.038 1.0775 41.426 41.024 42.102 3.3879 224 87 3 0 0 0 0.095207 1 7403 7403 34.932 0 1 450800 14707 10041 9455 9461 17965 17965 0.09985389914413645 ISETIEVKG 9 Unmodified _ISETIEVKG_ 0 0 0 REV__HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|53|2|anti-sense REV__HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|53|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 487.87548828125 2 488.27149 974.528426 -0.67738 -0.00033074 -0.40071 -0.00019566 -1.0781 -0.0005264 488.2713254204996 15.411 0.51258 18.776 18.536 19.048 3.3659 78 55 2 0 0 0 0.12477 1 814 814 1.6526 1.6526 1 34548 + 14708 23975 9456 9462 17966 17966 0.0401433048649551 ISETIEVKG 9 Unmodified _ISETIEVKG_ 0 0 0 REV__HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|53|2|anti-sense REV__HUERS-P3-int_dup479|chr11:74875875-74877162:+|1.191536752752549|0.3606703035397509|1.72|151.0|53|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 488.27149 974.528426 -0.358 -0.0001748 -0.74888 -0.00036566 -1.1069 -0.00054046 488.2711207890219 15.21 0.30062 18.707 18.556 18.857 3.4968 -0.035185 -0.00011365 NaN 1.6526 55 36 2 NaN NaN NaN NaN 0 NaN NaN 0 44499 + 14709 23975 9456 9462 0.0401433048649551 ISEVASHLY 9 Unmodified _ISEVASHLY_ 0 0 0 REV__L1MD1_dup3258|chr8:60593537-60594482:+|4.4828102626023565|0.1127811008168474|5.31|151.0|69|3|anti-sense REV__L1MD1_dup3258|chr8:60593537-60594482:+|4.4828102626023565|0.1127811008168474|5.31|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 509.7635498046875 2 509.763832 1017.51311 -0.09852 -5.0222E-05 -0.070349 -3.5862E-05 -0.16887 -8.6084E-05 509.76376712634675 42.344 1.0371 45.584 45.177 46.214 3.2394 174 73 3 0 0 0 0.33654 2 8613 8613;8735 11.64 0 1 418090 + 14710 27322 9457 9463 17967;17968 17967 0.005054636892737108 ISFCPHVR 8 Unmodified _ISFCPHVR_ 0 0 0 REV__L1MB8_dup9986|chr10:29652044-29653000:-|1.5917937959659936|0.0294010978340838|5.76|151.0|35|1|anti-sense REV__L1MB8_dup9986|chr10:29652044-29653000:-|1.5917937959659936|0.0294010978340838|5.76|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 479.3105773925781 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 111.28 1 114.85 114.35 115.35 3.572 0 0 0 0.40625 1 27444 27444 2.3027 0 1 + 14711 26453 9458 9464 17969 17969 0.005012819480612052 ISFLKTLSL 9 Unmodified _ISFLKTLSL_ 0 0 0 nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|13|intron nc|ENSG00000038532|Q2KHT3-2|CLEC16A nc|ENSG00000038532|Q2KHT3-2|CLEC16A MSMS UPN48_class_I_Rep_1 5 511.3186340332031 2 511.318243 1020.62193 NaN NaN NaN NaN NaN NaN NaN 72.608 1 76.081 75.581 76.581 3.4732 0 0 0 0.16861 1 17052 17052 18.373 2.224 1 14712 859 9459 9465 17970 17970 0.11244674659576503 ISFSLNIPV 9 Unmodified _ISFSLNIPV_ 0 0 0 REV__L1PA4_dup1403|chr2:148226113-148231635:-|1.6637721982120748|0.0485281896709338|5.1|151.0|174|1|anti-sense REV__L1PA4_dup1403|chr2:148226113-148231635:-|1.6637721982120748|0.0485281896709338|5.1|151.0|174|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 495.2868957519531 2 495.286943 988.559333 0.17155 8.4964E-05 -0.18099 -8.9641E-05 -0.0094424 -4.6767E-06 495.28684241724585 61.667 1.0781 65.035 64.655 65.733 3.3681 182 79 3 0 0 0 0.279 1 14568 14568 15.248 0 1 783110 + 14713 29605 9460 9466 17971 17971 0.06459528591358321 ISFVIFYYL 9 Unmodified _ISFVIFYYL_ 0 0 0 MER11C_dup73|chr2:53878088-53879155:+|1.0143964267998575|0.1544128055089952|2.72|151.0|23|2|sense MER11C_dup73|chr2:53878088-53879155:+|1.0143964267998575|0.1544128055089952|2.72|151.0|23|2|sense MER11C_dup73|chr2:53878088-53879155:+|1.0143964267998575|0.1544128055089952|2.72|151.0|23|2|sense MSMS UPN48_class_I_Rep_3 7 582.8231201171875 2 582.820618 1163.62668 NaN NaN NaN NaN NaN NaN NaN 41.063 1 44.709 44.209 45.209 3.6458 0 0 0 0.381 1 7375 7375 5.2307 0 1 14714 15798 9461 9467 17972 17972 0.0514155880234739 ISFYVTQSLF 10 Unmodified _ISFYVTQSLF_ 0 0 0 REV__LTR14B_dup153|chr7:30536160-30536569:+|1.3512574159111403|0.2014744422895339|2.75|151.0|11|2|sense REV__LTR14B_dup153|chr7:30536160-30536569:+|1.3512574159111403|0.2014744422895339|2.75|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 602.81494140625 2 602.816064 1203.61758 0.41929 0.00025276 0.06003 3.6187E-05 0.47932 0.00028894 602.8160038250286 62.985 1.1149 66.155 65.743 66.858 3.1698 190 74 3 0 0 0 0.55949 1 15153 15153 4.1895 1.4543 1 652890 + 14715 30845 9462 9468 17973 17973 0.023911654459880083 ISGLFLWIVL 10 Unmodified _ISGLFLWIVL_ 0 0 0 REV__L1PA16_dup259|chr1:89923474-89924985:+|2.3876756369934866|0.0715592241020346|5.06|151.0|99|3|anti-sense REV__L1PA16_dup259|chr1:89923474-89924985:+|2.3876756369934866|0.0715592241020346|5.06|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_3 7 580.8557739257812 2 580.857535 1159.70052 NaN NaN NaN NaN NaN NaN NaN 60.211 1 63.728 63.228 64.228 3.5169 0 0 0 0.53105 1 13208 13208 11.64 2.0963 1 + 14716 29365 9463 9469 17974 17974 0.12705526964646197 ISGLFLWIVL 10 Unmodified _ISGLFLWIVL_ 0 0 0 REV__L1PA16_dup259|chr1:89923474-89924985:+|2.3876756369934866|0.0715592241020346|5.06|151.0|99|3|anti-sense REV__L1PA16_dup259|chr1:89923474-89924985:+|2.3876756369934866|0.0715592241020346|5.06|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_3 7 580.8558959960938 2 580.857535 1159.70052 NaN NaN NaN NaN NaN NaN NaN 60.379 1 63.896 63.396 64.396 3.5169 0 0 0 0.53105 1 13260 13260 11.64 2.8949 1 + 14717 29365 9463 9469 17975 17975 0.12705526964646197 ISGRPLHKPGS 11 Unmodified _ISGRPLHKPGS_ 0 0 0 REV__MSTB1_dup4239|chr19:14770066-14770484:+|2.189071856205499|0.1047207873285374|4.39|151.0|24|3|anti-sense REV__MSTB1_dup4239|chr19:14770066-14770484:+|2.189071856205499|0.1047207873285374|4.39|151.0|24|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.8295288085938 2 574.830372 1147.64619 0.46875 0.00026945 -1.3951 -0.00080194 -0.92634 -0.00053249 574.8295135989838 53.835 0.64088 57.025 56.871 57.511 3.1899 50 42 2 0 0 0 0.65821 1 12239 12239 2.4985 0.84587 1 107170 + 14718 31908 9464 9470 17976 17976 0.0782732786581164 ISGSHSVLGL 10 Unmodified _ISGSHSVLGL_ 0 0 0 REV__MER101_dup159|chr7:101843853-101844309:+|2.598962023533752|0.0083274737673064|8.29|151.0|29|3|anti-sense REV__MER101_dup159|chr7:101843853-101844309:+|2.598962023533752|0.0083274737673064|8.29|151.0|29|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 485.3080139160156 2 485.271824 968.529095 0.1254 6.0852E-05 -1.1702 -0.00056788 -1.0448 -0.00050703 485.27124418440366 48.478 0.16753 52.002 51.928 52.096 3.5239 14 10 2 0 0 0 0.84575 1 9702 9702 25.399 4.9457 1 85955 + 14719 31058 9465 9471 17977 17977 0.04357169926197457 ISGSHSVLGL 10 Unmodified _ISGSHSVLGL_ 0 0 0 REV__MER101_dup159|chr7:101843853-101844309:+|2.598962023533752|0.0083274737673064|8.29|151.0|29|3|anti-sense REV__MER101_dup159|chr7:101843853-101844309:+|2.598962023533752|0.0083274737673064|8.29|151.0|29|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 485.3079833984375 2 485.271824 968.529095 0.14578 7.0744E-05 -0.1862 -9.0359E-05 -0.040419 -1.9614E-05 485.2718863627519 48.23 0.47586 51.864 51.66 52.136 3.6339 53 31 2 0 0 0 0.84575 1 9617 9617 14.838 0 1 110910 + 14720 31058 9465 9471 17978 17978 0.04357169926197457 ISHGHKKEK 9 Unmodified _ISHGHKKEK_ 0 0 0 ENST00000571006.5_1_16:46521999-46540142:-|nuORF ENST00000571006.5_1_16:46521999-46540142:-|nuORF ENST00000571006.5_1_16:46521999-46540142:-|nuORF MSMS UPN47_class_I_Rep_3 4 532.3053588867188 2 532.30399 1062.59343 NaN NaN NaN NaN NaN NaN NaN 69.477 1 72.681 72.181 73.181 3.2044 0 0 0 0.38639 1 16943 16943 3.9444 0 1 14721 7514 9466 9472 17979 17979 0.06463369802986563 ISHPTRSSFPL 11 Unmodified _ISHPTRSSFPL_ 0 0 0 ENST00000573580.5_2_16:3493766-3529556:+|nuORF ENST00000573580.5_2_16:3493766-3529556:+|nuORF ENST00000573580.5_2_16:3493766-3529556:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 621.3356323242188 2 621.335487 1240.65642 -0.11965 -7.4342E-05 0.48941 0.00030409 0.36976 0.00022975 621.335800307891 33.883 0.35435 37.158 37.007 37.361 3.2748 31 26 2 0 0 0 0.67264 1 6115 6115 1.1933 0.12188 1 55490 14722 7522 9467 9473 17980 17980 0.04571890800366418 ISIAIHVILD 10 Unmodified _ISIAIHVILD_ 0 0 0 REV__THE1A-int_dup584|chr6:143784996-143786558:-|1.3118386386000978|0.0387522336373815|5.08|151.0|84|3|anti-sense REV__THE1A-int_dup584|chr6:143784996-143786558:-|1.3118386386000978|0.0387522336373815|5.08|151.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3323364257812 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 94.638 1 94.638 94.138 95.138 0 0 0 0 0.53105 1 22956 22956 1.4819 0.15237 1 + 14723 32206 9468 9474 17981 17981 0.11167462062553568 ISIAIHVILD 10 Unmodified _ISIAIHVILD_ 0 0 0 REV__THE1A-int_dup584|chr6:143784996-143786558:-|1.3118386386000978|0.0387522336373815|5.08|151.0|84|3|anti-sense REV__THE1A-int_dup584|chr6:143784996-143786558:-|1.3118386386000978|0.0387522336373815|5.08|151.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.332763671875 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 94.772 1 94.772 94.272 95.272 0 0 0 0 0.53105 1 22994 22994 1.4819 0.68827 1 + 14724 32206 9468 9474 17982 17982 0.11167462062553568 ISIHLVTANM 10 Unmodified _ISIHLVTANM_ 0 0 0 REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|124|3|sense REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|124|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.7826538085938 2 549.802434 1097.59032 0.41025 0.00022556 -2.6532 -0.0014587 -2.2429 -0.0012332 549.8012390906975 49.799 0.069035 53.142 53.121 53.19 3.3431 6 4 2 0 0 0 0.36464 1 10891 10891 22.736 8.8302 1 28738 + 14725 30667 9469 9475 17983 17983 0.045423586339666144 ISIHLVTANM 10 Unmodified _ISIHLVTANM_ 0 0 0 REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|124|3|sense REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|124|3|sense MSMS UPN47_class_I_Rep_3 4 549.78271484375 2 549.802434 1097.59032 NaN NaN NaN NaN NaN NaN NaN 49.889 1 53.115 52.615 53.615 3.2262 0 0 0 0.53105 1 10974 10974 8.7454 1.4562 1 + 14726 30667 9469 9475 17984 17984 0.045423586339666144 ISIHLVTANM 10 Unmodified _ISIHLVTANM_ 0 0 0 REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|124|3|sense REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|124|3|sense MSMS UPN47_class_I_Rep_3 4 549.78271484375 2 549.802434 1097.59032 NaN NaN NaN NaN NaN NaN NaN 50.01 1 53.236 52.736 53.736 3.2262 0 0 0 0.53105 1 11011 11011 12.241 1.4167 1 + 14727 30667 9469 9475 17985 17985 0.045423586339666144 ISIIARPNF 9 Unmodified _ISIIARPNF_ 0 0 0 REV__HAL1ME_dup4684|chr9:41374848-41375611:-|1.214473041425718|0.0101258243209748|6.91|150.0|53|2|anti-sense REV__HAL1ME_dup4684|chr9:41374848-41375611:-|1.214473041425718|0.0101258243209748|6.91|150.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.3082275390625 2 515.805834 1029.59712 0.35665 0.00018396 -0.056081 -2.8927E-05 0.30057 0.00015503 515.8057595229077 67.671 0.78727 71.167 70.713 71.5 3.4964 145 67 3 0 0 0 0.21527 3 15453 15453;15583;15651 19.257 4.2403 1 778710 + 14728 23495 9470 9476 17986;17987;17988 17986 0.08350039576839663 ISILTMKKN 9 Unmodified _ISILTMKKN_ 0 0 0 L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|87|3|sense L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|87|3|sense L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|87|3|sense MSMS UPN47_class_I_Rep_3 4 524.3078002929688 2 524.315177 1046.6158 NaN NaN NaN NaN NaN NaN NaN 69.274 1 72.478 71.978 72.978 3.2044 0 0 0 0.22485 1 16881 16881 14.838 0.93222 1 14729 13979 9471 9477 17989 17989 0.09435833156385343 ISIPGQIFR 9 Unmodified _ISIPGQIFR_ 0 0 0 LTR10C_dup240|chr9:131412938-131413515:+|2.8993204163492337|0.0260198188026855|6.8|151.0|36|2|anti-sense LTR10C_dup240|chr9:131412938-131413515:+|2.8993204163492337|0.0260198188026855|6.8|151.0|36|2|anti-sense LTR10C_dup240|chr9:131412938-131413515:+|2.8993204163492337|0.0260198188026855|6.8|151.0|36|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.8060913085938 2 515.805834 1029.59712 0.35665 0.00018396 -0.056081 -2.8927E-05 0.30057 0.00015503 515.8057595229077 67.671 0.78727 71.167 70.713 71.5 3.4964 145 67 3 0 0 0 0.11355 2 15510 15510;15544 31.268 5.0002 1 778710 14730 15510 9472 9478 17990;17991 17990 0.08350039576839663 ISIPGQIFR 9 Unmodified _ISIPGQIFR_ 0 0 0 LTR10C_dup240|chr9:131412938-131413515:+|2.8993204163492337|0.0260198188026855|6.8|151.0|36|2|anti-sense LTR10C_dup240|chr9:131412938-131413515:+|2.8993204163492337|0.0260198188026855|6.8|151.0|36|2|anti-sense LTR10C_dup240|chr9:131412938-131413515:+|2.8993204163492337|0.0260198188026855|6.8|151.0|36|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.805908203125 2 515.805834 1029.59712 0.39595 0.00020423 -0.086797 -4.4771E-05 0.30915 0.00015946 515.8057471399972 67.509 1.0874 71.017 70.487 71.574 3.5077 207 96 3 0 0 0 0.11355 2 15411 15411;15451 31.268 5.0002 1 1138000 14731 15510 9472 9478 17992;17993 17992 0.08350039576839663 ISIQFNYSNY 10 Unmodified _ISIQFNYSNY_ 0 0 0 L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|61|3|anti-sense L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|61|3|anti-sense L1MB4_dup5794|chr11:3913637-3914444:-|2.2428205855224044|0.0092479737218932|7.92|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_3 4 624.7986450195312 2 624.798403 1247.58225 NaN NaN NaN NaN NaN NaN NaN 56.998 1 60.17 59.67 60.67 3.1721 0 0 0 0.53105 1 13141 13141 2.9952 0 1 14732 10539 9473 9479 17994 17994 -0.03163497081800415 ISITDKILG 9 Unmodified _ISITDKILG_ 0 0 0 ENST00000330817.10_1_22:50296904-50297255:-|nuORF ENST00000330817.10_1_22:50296904-50297255:-|nuORF ENST00000330817.10_1_22:50296904-50297255:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.2920837402344 2 480.292225 958.569897 0.0033926 1.6294E-06 0.03307 1.5883E-05 0.036462 1.7513E-05 480.29209977670075 59.9 0.89924 63.065 62.59 63.49 3.1651 89 59 2 0 0 0 0.24936 1 13974 13974 17.113 0 1 230140 14733 6185 9474 9480 17995 17995 0.08895511245827947 ISITNYRY 8 Unmodified _ISITNYRY_ 0 0 0 REV__L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|26|2|sense REV__L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|26|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 515.4005737304688 2 515.271824 1028.5291 0.30107 0.00015514 1.0701 0.00055139 1.3712 0.00070653 515.2726553447973 43.582 0.24393 43.582 43.536 43.78 0 41 27 2 0 0 0 0.82752 1 8764 8764 10.074 0.6908 1 211660 + 14734 25582 9475 9481 17996 17996 0.01597169926208153 ISIWNELCYK 10 Unmodified _ISIWNELCYK_ 0 0 0 REV__L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|63|3|sense REV__L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|63|3|sense MSMS UPN47_class_I_Rep_3 4 634.8207397460938 2 634.820824 1267.62709 NaN NaN NaN NaN NaN NaN NaN 30.142 1 33.453 32.953 33.953 3.3116 0 0 0 0.53105 1 4963 4963 1.3295 0.13619 1 + 14735 25056 9476 9482 17997 17997 0.003986104598652673 ISKEQQLI 8 Unmodified _ISKEQQLI_ 0 0 0 REV__L1ME2z_dup2295|chr6:13664779-13666275:+|1.4261729883873215|0.0257586889514249|5.79|151.0|56|3|sense REV__L1ME2z_dup2295|chr6:13664779-13666275:+|1.4261729883873215|0.0257586889514249|5.79|151.0|56|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.78302001953125 2 479.782025 957.549496 0.18592 8.9201E-05 -0.27709 -0.00013294 -0.09117 -4.3742E-05 479.7819023669021 55.905 0.56448 59.406 59.104 59.669 3.5014 66 40 2 0 0 0 0.82752 1 11953 11953 10.824 1.4765 1 95617 + 14736 27908 9477 9483 17998 17998 0.06902340586009359 ISKLRPGIL 9 Unmodified _ISKLRPGIL_ 0 0 0 ENST00000297875.6_1_X:37985921-37986104:+|nuORF ENST00000297875.6_1_X:37985921-37986104:+|nuORF ENST00000297875.6_1_X:37985921-37986104:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 498.8319396972656 2 498.831852 995.649151 -0.23569 -0.00011757 0.20054 0.00010004 -0.035147 -1.7533E-05 498.8318610367307 40.027 0.89835 43.694 43.208 44.107 3.6668 158 66 3 0 0 0 0.46434 1 7771 7771 4.3292 0.73274 1 425020 14737 6064 9478 9484 17999 17999 0.15115202990614307 ISKNKTART 9 Unmodified _ISKNKTART_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MULTI-MSMS UPN46_class_I_Rep_3 1 509.8038024902344 2 509.803823 1017.59309 0.30798 0.00015701 -0.19447 -9.914E-05 0.11351 5.787E-05 509.80357828282575 82.215 0.34032 82.215 82.099 82.439 0 38 27 2 0 0 0 0.49187 1 19444 19444 1.4819 1.4819 1 166230 14738 3354 9479 9485 18000 18000 0.08499950083125896 ISKNKTART 9 Unmodified _ISKNKTART_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 509.803823 1017.59309 0.18456 9.4087E-05 -0.41317 -0.00021064 -0.22862 -0.00011655 509.80336019495303 78.73 0.26327 82.073 81.971 82.235 3.3428 -0.030333 -0.00027914 NaN 1.4819 42 28 2 NaN NaN NaN NaN 0 NaN NaN 0 69564 14739 3354 9479 9485 0.08499950083125896 ISKSTGQEY 9 Unmodified _ISKSTGQEY_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS UPN46_class_I_Rep_3 1 506.75103759765625 2 506.750921 1011.48729 -0.15012 -7.6074E-05 -0.17979 -9.1107E-05 -0.32991 -0.00016718 506.75074176677816 20.677 0.57122 20.677 20.499 21.07 0 78 64 2 0 0 0 0.41587 2 2188 2188;2260 7.1017 4.897 1 80979 14740 1217 9480 9486 18001;18002 18001 -0.017994305529896337 ISLAPFIQY 9 Unmodified _ISLAPFIQY_ 0 0 0 ENST00000492423.5_1_2:232651186-232653667:+|nuORF ENST00000492423.5_1_2:232651186-232653667:+|nuORF ENST00000492423.5_1_2:232651186-232653667:+|nuORF MSMS UPN48_class_I_Rep_1 5 526.2935791015625 2 526.294768 1050.57498 NaN NaN NaN NaN NaN NaN NaN 60.646 1 64.12 63.62 64.62 3.4737 0 0 0 0.32573 1 13433 13433 9.3831 1.7742 1 14741 7077 9481 9487 18003 18003 0.051718151084287456 ISLDSALILF 10 Unmodified _ISLDSALILF_ 0 0 0 L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|291|3|anti-sense L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|291|3|anti-sense L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|291|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.3208618164062 2 546.320983 1090.62741 0.48163 0.00026312 -0.26898 -0.00014695 0.21265 0.00011618 546.3207841519636 79.436 0.46748 83.069 82.785 83.252 3.6331 74 51 2 0 0 0 0.30285 1 18919 18919 32.305 5.4218 1 373220 14742 15256 9482 9488 18004 18004 0.0857235345135905 ISLDSALILF 10 Unmodified _ISLDSALILF_ 0 0 0 L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|291|3|anti-sense L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|291|3|anti-sense L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|291|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 546.320983 1090.62741 0.50473 0.00027574 -0.46591 -0.00025453 0.038823 2.121E-05 546.3207187633404 79.632 0.18456 83.274 83.144 83.329 3.6423 0.069945 -0.00022596 NaN 32.305 42 22 2 NaN NaN NaN NaN 0 NaN NaN 0 114290 14743 15256 9482 9488 0.0857235345135905 ISLDWEWHY 9 Unmodified _ISLDWEWHY_ 0 0 0 Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|68|2|anti-sense Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|68|2|anti-sense Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|68|2|anti-sense MSMS UPN47_class_I_Rep_1 2 416.85302734375 3 416.860984 1247.56112 NaN NaN NaN NaN NaN NaN NaN 36.812 1 40.481 39.981 40.981 3.6692 0 0 0 0.39326 1 6914 6914 1.1933 0.12188 1 14744 33344 9483 9489 18005 18005 -0.052754623906594134 ISLFNIHMR 9 Unmodified _ISLFNIHMR_ 0 0 0 REV__HAL1_dup17398|chr13:36340686-36341183:+|1.178431107529302|0.0910923174714425|3.69|150.0|21|1|anti-sense REV__HAL1_dup17398|chr13:36340686-36341183:+|1.178431107529302|0.0910923174714425|3.69|150.0|21|1|anti-sense MSMS UPN48_class_I_Rep_3 7 565.8119506835938 2 565.810593 1129.60663 NaN NaN NaN NaN NaN NaN NaN 34.934 1 38.606 38.106 39.106 3.6721 0 0 0 0.28335 1 5604 5604 11.64 1.5664 1 + 14745 23377 9484 9490 18006 18006 0.04701484590736982 ISLGKKSGK 9 Unmodified _ISLGKKSGK_ 0 0 0 ENST00000479518.1_1_13:96236855-96239862:-|nuORF;ENST00000485031.5_1_13:96234490-96239991:-|nuORF;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1 ENST00000479518.1_1_13:96236855-96239862:-|nuORF ENST00000479518.1_1_13:96236855-96239862:-|nuORF MSMS UPN47_class_I_Rep_2 3 459.2796936035156 2 459.292559 916.570566 NaN NaN NaN NaN NaN NaN NaN 67.806 1 71.07 70.57 71.57 3.2636 0 0 0 0.38299 1 16374 16374 4.756 2.1785 1 14746 2873 9485 9491 18007 18007 0.10894350685521204 ISLHHDFPVF 10 Unmodified _ISLHHDFPVF_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 606.3134765625 2 606.314023 1210.61349 0.38373 0.00023266 0.068985 4.1826E-05 0.45271 0.00027448 606.3139714968058 56.079 0.6871 59.558 59.294 59.981 3.4785 44 36 2 0 0 0 0.56033 1 12782 12782 3.5965 1.5367 1 96824 + 14747 25502 9486 9492 18008 18008 0.016611207429377828 ISLHHDFPVF 10 Unmodified _ISLHHDFPVF_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense MSMS UPN47_class_I_Rep_2 3 606.3128662109375 2 606.314023 1210.61349 NaN NaN NaN NaN NaN NaN NaN 55.734 1 59.045 58.545 59.545 3.3102 0 0 0 0.53105 1 12703 12703 3.5965 0 1 + 14748 25502 9486 9492 18009 18009 0.016611207429377828 ISLHHDFPVF 10 Unmodified _ISLHHDFPVF_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.3156127929688 2 606.314023 1210.61349 0.48459 0.00029381 0.10534 6.3872E-05 0.58994 0.00035769 606.3137991056115 55.654 0.72986 59.162 58.785 59.515 3.5082 101 48 3 0 0 0 0.54466 2 11910 11889;11910 6.2058 2.9245 1 208120 + 14749 25502 9486 9492 18010;18011 18011 0.016611207429377828 ISLHHDFPVF 10 Unmodified _ISLHHDFPVF_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.3133544921875 2 606.314023 1210.61349 0.44937 0.00027246 -0.1783 -0.00010811 0.27107 0.00016435 606.3138010397399 56.282 0.65878 59.825 59.499 60.158 3.5427 93 58 2 0 0 0 0.56033 1 11944 11944 3.5965 0 1 168770 + 14750 25502 9486 9492 18012 18012 0.016611207429377828 ISLLCRHYK 9 Unmodified _ISLLCRHYK_ 0 0 0 Tigger3b_dup1319|chr3:141893847-141895093:-|1.8023070524647853|0.4629413046418521|1.96|151.0|46|1|anti-sense Tigger3b_dup1319|chr3:141893847-141895093:-|1.8023070524647853|0.4629413046418521|1.96|151.0|46|1|anti-sense Tigger3b_dup1319|chr3:141893847-141895093:-|1.8023070524647853|0.4629413046418521|1.96|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_2 3 566.7968139648438 2 566.818418 1131.62228 NaN NaN NaN NaN NaN NaN NaN 48.503 1 51.849 51.349 52.349 3.3465 0 0 0 0.38639 1 10492 10492 3.9444 0.66309 1 14751 33368 9487 9493 18013 18013 0.06173771107773973 ISLRALPAK 9 Unmodified _ISLRALPAK_ 0 0 0 REV__L1M4_dup16836|chr15:64581188-64581922:-|3.243038967196468|0.0144118766044455|7.81|151.0|23|3|sense REV__L1M4_dup16836|chr15:64581188-64581922:-|3.243038967196468|0.0144118766044455|7.81|151.0|23|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 485.236572265625 2 484.816202 967.617851 -0.46607 -0.00022596 0.051711 2.507E-05 -0.41435 -0.00020089 484.8162572056602 31.876 0.10977 35.176 35.133 35.243 3.2991 12 7 2 0 0 0 0.12281 1 5479 5479 4.3292 0 1 33101 + 14752 24389 9488 9494 18014 18014 0.13274629956515582 ISLTADKPK 9 Unmodified _ISLTADKPK_ 0 0 0 REV__ENST00000499418.2_1_8:125486424-125486685:-|nuORF REV__ENST00000499418.2_1_8:125486424-125486685:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 486.7913818359375 2 486.78985 971.565146 0.18849 9.1754E-05 0.86839 0.00042272 1.0569 0.00051448 486.7903080704948 35.107 0.67238 38.621 38.372 39.045 3.5144 104 69 2 0 0 0 0.47197 1 5756 5756 3.5965 0.31518 1 125260 + 14753 22684 9489 9495 18015 18015 0.07822627103041668 ISLWIIRTPLV 11 Unmodified _ISLWIIRTPLV_ 0 0 0 REV__ENST00000429579.5_1_2:175986216-175994906:-|nuORF REV__ENST00000429579.5_1_2:175986216-175994906:-|nuORF MSMS UPN48_class_I_Rep_2 6 437.69134521484375 3 437.611341 1309.81219 NaN NaN NaN NaN NaN NaN NaN 60.049 1 63.536 63.036 64.036 3.4868 0 0 0 0.38417 1 13226 13226 1.2148 0.14337 1 + 14754 22287 9490 9496 18016 18016 0.1696796132180225 ISMWFRFA 8 Unmodified _ISMWFRFA_ 0 0 0 L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|147|3|anti-sense L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|147|3|anti-sense L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|147|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.2692260742188 2 529.26803 1056.52151 0.34516 0.00018268 1.6649 0.00088117 2.01 0.0010639 529.2686567202034 62.96 0.10524 66.13 66.107 66.213 3.1698 6 5 2 0 0 0 0.82752 1 14973 14973 5.2307 0.47466 1 70982 14755 13649 9491 9497 18017 18017 -0.00449260875075197 ISNEFKVEV 9 Unmodified _ISNEFKVEV_ 0 0 0 ENST00000477264.1_1_1:9790568-9793533:-|nuORF;nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1 ENST00000477264.1_1_1:9790568-9793533:-|nuORF ENST00000477264.1_1_1:9790568-9793533:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 532.78466796875 2 532.784764 1063.55498 -0.080162 -4.2709E-05 0.14339 7.6397E-05 0.063229 3.3688E-05 532.7847631126934 39.738 1.3698 42.976 42.593 43.963 3.2379 218 90 3 0 0 0 0.11355 1 7971 7971 31.268 2.7738 1 1007400 14756 4532 9492 9498 18018 18018 0.025740193777892273 ISNLDRVRL 9 Unmodified _ISNLDRVRL_ 0 0 0 ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 MULTI-MSMS UPN48_class_I_Rep_1 5 543.3240966796875 2 543.324922 1084.63529 0.45568 0.00024758 -0.29686 -0.00016129 0.15882 8.629E-05 543.3245706166699 35.219 0.82294 38.733 38.45 39.273 3.5144 166 81 3 0 0 0 0.39745 1 5694 5694 8.1555 1.0538 1 291530 14757 5771 9493 9499 18019 18019 0.09635925491511443 ISNSHPLSL 9 Unmodified _ISNSHPLSL_ 0 0 0 ENSG00000126456|ENST00000377139|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3 ENSG00000126456|ENST00000377139|IRF3 ENSG00000126456|ENST00000377139|IRF3 MSMS UPN48_class_I_Rep_2 6 484.2643737792969 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 39.156 1 42.886 42.386 43.386 3.7297 0 0 0 0.16861 1 6915 6915 18.373 0.22675 1 14758 2534 9494 9500 18020 18020 0.028848834091377284 ISNWKNQHCK 10 Unmodified _ISNWKNQHCK_ 0 0 0 L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|42|2|sense L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|42|2|sense L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|42|2|sense MSMS UPN47_class_I_Rep_1 2 629.311279296875 2 629.311489 1256.60842 NaN NaN NaN NaN NaN NaN NaN 60.7 1 64.082 63.582 64.582 3.3815 0 0 0 0.53105 1 14183 14183 3.2813 0.28607 1 14759 9251 9495 9501 18021 18021 -0.009615063913088306 ISPKYHHPY 9 Unmodified _ISPKYHHPY_ 0 0 0 REV__MER20B_dup3746|chr18:63276600-63277009:+|1.8775004086060063|0.0125508685167421|7.22|151.0|21|1|anti-sense REV__MER20B_dup3746|chr18:63276600-63277009:+|1.8775004086060063|0.0125508685167421|7.22|151.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 571.2930297851562 2 571.293091 1140.57163 0.39833 0.00022756 1.7919 0.0010237 2.1902 0.0012513 571.2939814451424 64.307 0.11736 67.563 67.477 67.594 3.2556 10 9 2 0 0 0 0.46434 1 15315 15315 4.3292 0 1 43265 + 14760 31165 9496 9502 18022 18022 0.0069656505440889305 ISPLYAPSFIN 11 Unmodified _ISPLYAPSFIN_ 0 0 0 REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 611.329345703125 2 611.329339 1220.64412 0.38843 0.00023746 -0.21156 -0.00012933 0.17687 0.00010812 611.3290264730632 69.725 0.78862 73.093 72.749 73.537 3.3678 175 74 3 0 0 0 0.64297 1 16919 16919 3.8763 0.88109 1 370470 + 14761 27452 9497 9503 18023 18023 0.04262854337321187 ISPLYAPSFIN 11 Unmodified _ISPLYAPSFIN_ 0 0 0 REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 611.3292846679688 2 611.329339 1220.64412 0.407 0.00024881 -0.24306 -0.00014859 0.16394 0.00010022 611.3290165930888 69.995 0.8485 73.271 72.884 73.733 3.2761 195 76 4 0 0 0 0.56174 1 16981 16981 6.1918 0.89496 1 442190 + 14762 27452 9497 9503 18024 18024 0.04262854337321187 ISPLYAPSFIN 11 Unmodified _ISPLYAPSFIN_ 0 0 0 REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 611.3289794921875 2 611.329339 1220.64412 0.45126 0.00027587 -0.27352 -0.00016721 0.17774 0.00010866 611.3289848902878 69.989 0.92352 73.194 72.812 73.735 3.2044 180 76 3 0 0 0 0.56174 1 17130 17130 6.1918 0.89496 1 499590 + 14763 27452 9497 9503 18025 18025 0.04262854337321187 ISPLYAPSFIN 11 Unmodified _ISPLYAPSFIN_ 0 0 0 REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense REV__L1MD2_dup9504|chr17:47165285-47165958:-|1.6600831062819457|0.0306227831240037|5.76|151.0|48|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 611.3287353515625 2 611.329339 1220.64412 0.46805 0.00028613 -0.43889 -0.00026831 0.029162 1.7828E-05 611.328887214543 69.842 0.91296 73.302 73.058 73.971 3.4598 149 72 3 0 0 0 0.64297 1 16284 16284 3.8763 0.88109 1 305920 + 14764 27452 9497 9503 18026 18026 0.04262854337321187 ISPNRRYL 8 Unmodified _ISPNRRYL_ 0 0 0 nc|ENSG00000243710|Q96MR6-2|CFAP57;ENSG00000243710|ENST00000372492|CFAP57 nc|ENSG00000243710|Q96MR6-2|CFAP57 nc|ENSG00000243710|Q96MR6-2|CFAP57 MSMS UPN46_class_I_Rep_3 1 509.80621337890625 2 509.793258 1017.57196 NaN NaN NaN NaN NaN NaN NaN 42.635 1 42.635 42.135 43.135 0 0 0 0 0.40364 1 8454 8454 5.7604 0.52976 1 14765 5723 9498 9504 18027 18027 0.06387984774266897 ISPPILQKH 9 Unmodified _ISPPILQKH_ 0 0 0 L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|68|2|sense L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|68|2|sense L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 516.8143310546875 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 36.592 1 36.592 36.092 37.092 0 0 0 0 0.39598 1 6799 6799 1.6526 0 1 14766 14412 9499 9505 18028 18028 0.09822326093922129 ISPPILQKH 9 Unmodified _ISPPILQKH_ 0 0 0 L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|68|2|sense L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|68|2|sense L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 516.8146362304688 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 32.37 1 36.02 35.52 36.52 3.6497 0 0 0 0.39518 1 4993 4993 1.8442 0 1 14767 14412 9499 9505 18029 18029 0.09822326093922129 ISPPNLIV 8 Unmodified _ISPPNLIV_ 0 0 0 REV__ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron REV__ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron MSMS UPN47_class_I_Rep_1 2 426.764404296875 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 59.658 1 63.057 62.557 63.557 3.3982 0 0 0 0.40746 1 13870 13870 0.69038 0 1 + 14768 19049 9500 9506 18030 18030 0.07995874391201596 ISPPNLIV 8 Unmodified _ISPPNLIV_ 0 0 0 REV__ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron REV__ENSG00000133105.8,RXFP2,chr13,+,I16.1,31793089,31797200|51|13.54|1|intron MSMS UPN47_class_I_Rep_1 2 426.764404296875 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 59.784 1 63.182 62.682 63.682 3.3982 0 0 0 0.40746 1 13907 13907 0.69038 0 1 + 14769 19049 9500 9506 18031 18031 0.07995874391201596 ISPRITGSLY 10 Unmodified _ISPRITGSLY_ 0 0 0 L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|117|3|anti-sense L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|117|3|anti-sense L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|117|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.8145141601562 2 553.813856 1105.61316 0.35457 0.00019637 -0.3493 -0.00019344 0.0052757 2.9218E-06 553.8135969840108 57.714 0.86859 60.882 60.509 61.377 3.1681 159 65 3 0 0 0 0.53004 1 13469 13469 8.1555 8.1555 1 539010 14770 11586 9501 9507 18032 18032 0.06457701023077789 ISQKKMYKW 9 Unmodified _ISQKKMYKW_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|141|2|sense;L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|41|3|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|141|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|141|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 404.5888671875 3 404.55836 1210.65325 0.0071355 2.8867E-06 -0.57177 -0.00023131 -0.56463 -0.00022843 404.55817490322613 38.987 0.12738 42.642 42.56 42.688 3.6557 15 11 2 0 0 0 0.1238 1 6763 6763 1.9064 0.1641 1 44782 14771 9421 9502 9508 18033 18033 0.056349244219973116 ISQLGLGVAV 10 Unmodified _ISQLGLGVAV_ 0 0 0 MER90a_dup530|chr7:156884162-156884759:+|1.0287564948360783|0.0138616219359548|6.21|150.0|7|2|sense MER90a_dup530|chr7:156884162-156884759:+|1.0287564948360783|0.0138616219359548|6.21|150.0|7|2|sense MER90a_dup530|chr7:156884162-156884759:+|1.0287564948360783|0.0138616219359548|6.21|150.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.79150390625 2 478.792392 955.570232 -0.18053 -8.6438E-05 -0.30124 -0.00014423 -0.48177 -0.00023067 478.7920464410764 44.41 0.48447 48.105 47.817 48.302 3.6951 51 33 2 0 0 0 0.53004 1 9224 9224 8.1555 2.4237 1 47103 14772 16230 9503 9509 18034 18034 0.09066930965661868 ISQRFPVFH 9 Unmodified _ISQRFPVFH_ 0 0 0 L1MD3_dup4473|chr16:89482354-89482489:+|1.0487556229545705|0.0074618709250366|7.13|149.0|9|2|anti-sense L1MD3_dup4473|chr16:89482354-89482489:+|1.0487556229545705|0.0074618709250366|7.13|149.0|9|2|anti-sense L1MD3_dup4473|chr16:89482354-89482489:+|1.0487556229545705|0.0074618709250366|7.13|149.0|9|2|anti-sense MSMS UPN48_class_I_Rep_2 6 565.812255859375 2 565.808908 1129.60326 NaN NaN NaN NaN NaN NaN NaN 35.033 1 38.707 38.207 39.207 3.6735 0 0 0 0.35339 1 5722 5722 7.9102 0.62092 1 14773 12076 9504 9510 18035 18035 0.043645578083669534 ISQVKEKII 9 Unmodified _ISQVKEKII_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-SECPEP UPN48_class_I_Rep_1 5 529.2733154296875 2 529.334424 1056.6543 0.361 0.00019109 -0.34306 -0.00018159 0.017937 9.4946E-06 529.3341832431539 69.508 0.42253 72.963 72.841 73.264 3.4548 44 31 2 0 0 0 0.1154 1 16131 16131 13.042 0 1 120240 14774 5320 9505 9511 18036 18036 0.12823462062578983 ISQVKEKII 9 Unmodified _ISQVKEKII_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 529.334424 1056.6543 0.41663 0.00022053 -0.37013 -0.00019592 0.046492 2.461E-05 529.3340558420932 69.252 0.22179 72.774 72.647 72.868 3.5216 -0.094526 -2.331E-05 NaN 13.042 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 81575 14775 5320 9505 9511 0.12823462062578983 ISRGFLGSPG 10 Unmodified _ISRGFLGSPG_ 0 0 0 ENST00000458516.5_1_6:30294268-30294532:+|nuORF ENST00000458516.5_1_6:30294268-30294532:+|nuORF ENST00000458516.5_1_6:30294268-30294532:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 495.77227783203125 2 495.771991 989.529429 0.2509 0.00012439 0.50496 0.00025034 0.75586 0.00037473 495.7720874123013 39.275 0.57046 39.275 39.028 39.598 0 96 57 2 0 0 0 0.54822 1 7493 7493 5.7319 0.50118 1 317400 14776 6846 9506 9512 18037 18037 0.03424589646044751 ISRTKKVPG 9 Unmodified _ISRTKKVPG_ 0 0 0 REV__ENST00000548158.1_1_12:50393384-50398020:-|nuORF REV__ENST00000548158.1_1_12:50393384-50398020:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.31103515625 2 493.311284 984.608014 -0.14447 -7.1271E-05 -0.033631 -1.6591E-05 -0.17811 -8.7861E-05 493.3111936915094 44.49 0.86303 48.185 47.885 48.748 3.6951 87 60 2 0 0 0 0.43153 1 9284 9284 6.2058 0.47393 1 107350 + 14777 19911 9507 9513 18038 18038 0.11509441951125154 ISRTWWQVPV 10 Unmodified _ISRTWWQVPV_ 0 0 0 AluSx1_dup99308|chr17:67949776-67950072:+|1.0120376935912847|0.0409164929540282|4.63|151.0|8|2|sense;AluJr_dup14335|chr3:50004623-50004928:-|1.32174901333568|0.0161115781275302|6.36|151.0|6|2|sense AluSx1_dup99308|chr17:67949776-67950072:+|1.0120376935912847|0.0409164929540282|4.63|151.0|8|2|sense AluSx1_dup99308|chr17:67949776-67950072:+|1.0120376935912847|0.0409164929540282|4.63|151.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 636.3485107421875 2 636.348397 1270.68224 NaN NaN NaN NaN NaN NaN NaN 62.378 1 65.851 65.351 66.351 3.4738 0 0 0 0.53105 1 13935 13935 1.3295 0 1 14778 133 9508 9514 18039 18039 0.05772785042631767 ISRVLKWWILY 11 Unmodified _ISRVLKWWILY_ 0 0 0 L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|67|2|anti-sense L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|67|2|anti-sense L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|67|2|anti-sense MSMS UPN46_class_I_Rep_3 1 492.877197265625 3 492.962374 1475.86529 NaN NaN NaN NaN NaN NaN NaN 42.483 1 42.483 41.983 42.983 0 0 0 0 0.38417 1 8411 8411 0.50596 0 1 14779 8861 9509 9515 18040 18040 0.14639339104473947 ISRWLSVARSS 11 Unmodified _ISRWLSVARSS_ 0 0 0 REV__L1PA5_dup9118|chr13:31632440-31638541:-|2.3389987857222745|0.0489343491214447|5.58|150.0|351|3|anti-sense REV__L1PA5_dup9118|chr13:31632440-31638541:-|2.3389987857222745|0.0489343491214447|5.58|150.0|351|3|anti-sense MSMS UPN46_class_I_Rep_3 1 631.6887817382812 2 631.354211 1260.69387 NaN NaN NaN NaN NaN NaN NaN 67.471 1 67.471 66.971 67.971 0 0 0 0 0.38417 1 15362 15362 2.4985 0 1 + 14780 29818 9510 9516 18041 18041 0.0739498206596636 ISSADITTT 9 Unmodified _ISSADITTT_ 0 0 0 REV__ENSG00000141956|ENST00000398548|PRDM15 REV__ENSG00000141956|ENST00000398548|PRDM15 MSMS UPN47_class_I_Rep_3 4 454.73126220703125 2 454.732197 907.449842 NaN NaN NaN NaN NaN NaN NaN 13.826 1 17.196 16.696 17.696 3.3697 0 0 0 0.4029 1 402 402 0 0 1 + 14781 19393 9511 9517 18042 18042 -0.007585218186477505 ISSFISNFMY 10 Unmodified _ISSFISNFMY_ 0 0 0 L1M1_dup8220|chr14:60955683-60957261:-|1.293725037105912|0.0730629527033589|4.15|150.0|70|2|anti-sense L1M1_dup8220|chr14:60955683-60957261:-|1.293725037105912|0.0730629527033589|4.15|150.0|70|2|anti-sense L1M1_dup8220|chr14:60955683-60957261:-|1.293725037105912|0.0730629527033589|4.15|150.0|70|2|anti-sense MSMS UPN47_class_I_Rep_2 3 604.7864379882812 2 604.78645 1207.55835 NaN NaN NaN NaN NaN NaN NaN 70.103 1 73.386 72.886 73.886 3.2828 0 0 0 0.53105 1 17061 17061 1.3295 0.13619 1 14782 8630 9512 9518 18043 18043 -0.037130538398514545 ISSLTHWLY 9 Unmodified _ISSLTHWLY_ 0 0 0 L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|60|1|anti-sense L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|60|1|anti-sense L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|60|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.7977905273438 2 560.295299 1118.57605 0.43738 0.00024506 0.075112 4.2085E-05 0.51249 0.00028714 560.2949708556147 66.961 1.0669 70.152 69.825 70.892 3.1914 182 78 3 0 0 0 0.45688 1 16394 16394 4.756 0.42677 1 302470 14783 10204 9513 9519 18044 18044 0.02150029477343196 ISTCPQLLF 9 Unmodified _ISTCPQLLF_ 0 0 0 REV__Tigger1_dup10808|chr17:30506030-30507433:+|1.8557664641334937|0.1990065665913949|3.22|151.0|54|1|anti-sense REV__Tigger1_dup10808|chr17:30506030-30507433:+|1.8557664641334937|0.1990065665913949|3.22|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.2701721191406 2 511.272978 1020.5314 0.11407 5.8319E-05 -3.3059 -0.0016902 -3.1918 -0.0016319 511.26997293965815 50.039 0.6012 53.382 53.041 53.642 3.3431 63 33 3 0 0 0 0.36392 1 10955 10955 10.074 0 1 86649 + 14784 32339 9514 9520 18045 18045 0.02195882339651689 ISTIEACQNQ 10 Unmodified _ISTIEACQNQ_ 0 0 0 REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|60|2|sense REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|60|2|sense MSMS UPN47_class_I_Rep_3 4 553.7609252929688 2 553.760963 1105.50737 NaN NaN NaN NaN NaN NaN NaN 23.258 1 26.608 26.108 27.108 3.3503 0 0 0 0.53105 1 2925 2925 3.2813 0.70383 1 + 14785 28875 9515 9521 18046 18046 -0.04116002884711634 ISTLKLQVAF 10 Unmodified _ISTLKLQVAF_ 0 0 0 ENST00000464459.1_1_2:99743483-99757602:-|nuORF ENST00000464459.1_1_2:99743483-99757602:-|nuORF ENST00000464459.1_1_2:99743483-99757602:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.3372192382812 2 560.342249 1118.66995 0.5036 0.00028219 -1.6845 -0.00094388 -1.1809 -0.00066169 560.3415470041718 107.47 0.26818 111.01 110.86 111.13 3.5382 41 36 2 0 0 0 0.52562 1 26220 26220 8.7454 1.1365 1 3450700 14786 6882 9516 9522 18047 18047 0.11535748579581195 ISTLVNFLR 9 Unmodified _ISTLVNFLR_ 0 0 0 L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|63|1|anti-sense L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|63|1|anti-sense L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_1 2 531.81689453125 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 80.596 1 84.083 83.583 84.583 3.4874 0 0 0 0.39518 1 20080 20080 1.8442 0 1 14787 11065 9517 9523 18048 18048 0.09498308748311501 ISTMGIVSMSI 11 Unmodified _ISTMGIVSMSI_ 0 0 0 nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4 nc|ENSG00000022567|Q5BKX6-2|SLC45A4 nc|ENSG00000022567|Q5BKX6-2|SLC45A4 MULTI-SECPEP UPN48_class_I_Rep_1 5 569.834228515625 2 569.79596 1137.57737 0.4617 0.00026307 2.9769 0.0016962 3.4386 0.0019593 569.7986056741552 55.486 0.58125 58.994 58.706 59.287 3.5082 57 37 2 0 0 0 22.551 1 11784 11784 4.897 1.3005 1 71963 14788 811 9518 9524 18049 18049 0.014081594595836577 ISTNVVVVM 9 Unmodified _ISTNVVVVM_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS UPN47_class_I_Rep_2 3 481.2725830078125 2 481.272978 960.531403 -0.21003 -0.00010108 -0.10749 -5.1734E-05 -0.31753 -0.00015282 481.272863871794 25.575 0.51664 29.058 28.731 29.248 3.483 81 50 2 0 0 0 0.48846 1 3543 3543 1.8442 0.19162 1 55080 + 14789 20942 9519 9525 18050 18050 0.049558823396409935 ISTPSEVSTPL 11 Unmodified _ISTPSEVSTPL_ 0 0 0 nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17 nc|ENSG00000169876|Q685J3-2|MUC17 nc|ENSG00000169876|Q685J3-2|MUC17 MULTI-MSMS UPN48_class_I_Rep_1 5 566.320068359375 2 565.800611 1129.58667 0.54387 0.00030772 -0.55448 -0.00031372 -0.010603 -5.9994E-06 565.8003331572515 58.273 0.54549 61.76 61.531 62.077 3.487 47 30 2 0 0 0 0.50573 1 12766 12766 7.609 1.4171 1 127220 14790 4441 9520 9526 18051 18051 0.027059673411031326 ISTPVIRTFGR 11 Unmodified _ISTPVIRTFGR_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MSMS UPN47_class_I_Rep_3 4 416.2486877441406 3 416.247062 1245.71936 NaN NaN NaN NaN NaN NaN NaN 115.21 1 118.69 118.19 119.19 3.4802 0 0 0 0.38417 1 28320 28320 1.1098 0.48293 1 14791 899 9521 9527 18052 18052 0.10632456588405148 ISTQTFTTF 9 Unmodified _ISTQTFTTF_ 0 0 0 REV__L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|153|1|anti-sense REV__L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|153|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3056030273438 2 523.263665 1044.51278 0.26442 0.00013836 0.35819 0.00018743 0.6226 0.00032579 523.7654475787575 52.253 0.11609 52.253 52.173 52.289 0 18 14 2 0 0 0 0.14216 1 11159 11159 26.268 0 1 118760 + 14792 30425 9522 9528 18053 18053 -0.0076995603058094275 ISTSSFSME 9 Unmodified _ISTSSFSME_ 0 0 0 L1MB7_dup10339|chr8:132717031-132718219:+|1.334666315426981|0.1630992096307789|3.03|151.0|71|3|anti-sense L1MB7_dup10339|chr8:132717031-132718219:+|1.334666315426981|0.1630992096307789|3.03|151.0|71|3|anti-sense L1MB7_dup10339|chr8:132717031-132718219:+|1.334666315426981|0.1630992096307789|3.03|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_1 2 494.718017578125 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 34.493 1 38.179 37.679 38.679 3.6859 0 0 0 0.39428 1 6213 6213 2.0598 0 1 14793 10669 9523 9529 18054 18054 -0.07230168070339005 ISTYLCVVQF 10 Unmodified _ISTYLCVVQF_ 0 0 0 L1MB4_dup744|chr2:61356963-61357615:+|1.3236144734595443|0.0146614190116297|6.5|151.0|25|1|anti-sense L1MB4_dup744|chr2:61356963-61357615:+|1.3236144734595443|0.0146614190116297|6.5|151.0|25|1|anti-sense L1MB4_dup744|chr2:61356963-61357615:+|1.3236144734595443|0.0146614190116297|6.5|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_2 6 586.8052368164062 2 586.804642 1171.59473 NaN NaN NaN NaN NaN NaN NaN 65.091 1 68.57 68.07 69.07 3.4792 0 0 0 0.53105 1 14769 14769 13.042 2.2185 1 14794 10575 9524 9530 18055 18055 0.015798230568634608 ISVALKDKVF 10 Unmodified _ISVALKDKVF_ 0 0 0 REV__L1PB1_dup7983|chrX:81310769-81312857:-|1.3835011948509246|0.0086804911090664|7.32|149.0|86|1|anti-sense REV__L1PB1_dup7983|chrX:81310769-81312857:-|1.3835011948509246|0.0086804911090664|7.32|149.0|86|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3400268554688 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 94.614 1 98.515 98.015 99.015 3.9016 0 0 0 0.53105 1 22420 22420 3.2813 0 1 + 14795 30492 9525 9531 18056 18056 0.11535748579581195 ISVDLFDWP 9 Unmodified _ISVDLFDWP_ 0 0 0 REV__ENST00000534529.5_1_11:117094552-117094699:-|nuORF REV__ENST00000534529.5_1_11:117094552-117094699:-|nuORF MSMS UPN47_class_I_Rep_2 3 546.2738037109375 2 546.274032 1090.53351 NaN NaN NaN NaN NaN NaN NaN 50.502 1 53.845 53.345 54.345 3.3431 0 0 0 0.29868 1 11106 11106 10.824 0 1 + 14796 22877 9526 9532 18057 18057 -0.008133656509244247 ISVDSLDFNKK 11 Unmodified _ISVDSLDFNKK_ 0 0 0 ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENST00000517754.1_1_8:26221160-26227926:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 633.3413696289062 2 633.340435 1264.66632 0.50195 0.0003179 0.73029 0.00046252 1.2322 0.00078043 633.3409021579438 68.635 0.77487 72.143 71.828 72.603 3.5083 114 62 3 0 0 0 0.65271 1 15894 15894 2.9952 0.26005 1 241380 14797 4725 9527 9533 18058 18058 0.04457034015058525 ISVERVIEY 9 Unmodified _ISVERVIEY_ 0 0 0 nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4 nc|ENSG00000125257|O15439-2|ABCC4 nc|ENSG00000125257|O15439-2|ABCC4 MULTI-MSMS UPN47_class_I_Rep_2 3 554.3054809570312 2 554.305864 1106.59717 0.51581 0.00028592 0.095554 5.2966E-05 0.61137 0.00033888 554.3058256823257 55.649 0.43744 58.959 58.861 59.298 3.3102 41 26 2 0 0 0 0.32682 1 12726 12726 12.241 0.74595 1 75720 14798 2498 9528 9534 18059 18059 0.04813994786195508 ISVLTNVLRL 10 Unmodified _ISVLTNVLRL_ 0 0 0 L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|50|3|anti-sense L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|50|3|anti-sense L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.3589477539062 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 86.142 1 89.912 89.412 90.412 3.7701 0 0 0 0.53105 1 20450 20450 1.3295 0.80477 1 14799 10299 9529 9535 18060 18060 0.14910839845219925 ISVPHKIISV 10 Unmodified _ISVPHKIISV_ 0 0 0 L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|1|1|sense L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|1|1|sense L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 546.83984375 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 92.503 1 96.127 95.627 96.627 3.624 0 0 0 0.53105 1 22230 22230 5.7319 1.4026 1 14800 12728 9530 9536 18061 18061 0.12811168299458586 ISWLLGPLKGQ 11 Unmodified _ISWLLGPLKGQ_ 0 0 0 L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|105|3|anti-sense L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|105|3|anti-sense L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|105|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3616943359375 2 606.360973 1210.70739 0.53088 0.0003219 0.70559 0.00042784 1.2365 0.00074974 606.3613769252149 38.406 0.039959 38.406 38.395 38.435 0 4 2 2 0 0 0 0.67264 1 7313 7313 1.1933 0.66858 1 816430 14801 11302 9531 9537 18062 18062 0.11046839845221257 ISWLLSFWLP 10 Unmodified _ISWLLSFWLP_ 0 0 0 REV__LTR85c_dup384|chr5:81644190-81644871:+|2.47563056321895|0.0219391088528404|6.82|151.0|45|3|anti-sense REV__LTR85c_dup384|chr5:81644190-81644871:+|2.47563056321895|0.0219391088528404|6.82|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 631.3536987304688 2 631.352617 1260.69068 NaN NaN NaN NaN NaN NaN NaN 71.522 1 74.988 74.488 75.488 3.466 0 0 0 0.53105 1 16727 16727 3.9444 0 1 + 14802 31027 9532 9538 18063 18063 0.07076338959268469 ISWVWWHTPVV 11 Unmodified _ISWVWWHTPVV_ 0 0 0 AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense;AluSc8_dup14887|chr12:92129206-92129496:+|1.300430480862524|0.0452433812730274|4.85|151.0|11|3|sense;AluJr_dup33905|chr7:101846324-101846627:-|1.3290793412676245|0.0044208247090311|8.23|151.0|9|3|sense;AluJo_dup29229|chr7:74365757-74366077:-|1.0473300568878885|0.0166754098205945|5.97|151.0|2|1|sense;AluSc_dup11901|chr6:32441077-32441383:+|1.2022941789686248|0.403572247040847|1.57|148.0|12|3|sense;AluJr_dup2093|chr1:44494931-44495235:+|4.012501421563882|0.0022127733867952|10.82|150.0|1|1|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 470.9185791015625 3 470.583674 1408.72919 0.10219 4.8088E-05 0.93233 0.00043874 1.0345 0.00048683 470.58406797943337 41.091 0.64864 44.597 44.294 44.942 3.506 117 55 3 0 0 0 0.52833 1 7449 7449 7.0371 0 1 240710 14803 100 9533 9539 18064 18064 0.041176445937708195 ISWVWWHTPVV 11 Unmodified _ISWVWWHTPVV_ 0 0 0 AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense;AluSc8_dup14887|chr12:92129206-92129496:+|1.300430480862524|0.0452433812730274|4.85|151.0|11|3|sense;AluJr_dup33905|chr7:101846324-101846627:-|1.3290793412676245|0.0044208247090311|8.23|151.0|9|3|sense;AluJo_dup29229|chr7:74365757-74366077:-|1.0473300568878885|0.0166754098205945|5.97|151.0|2|1|sense;AluSc_dup11901|chr6:32441077-32441383:+|1.2022941789686248|0.403572247040847|1.57|148.0|12|3|sense;AluJr_dup2093|chr1:44494931-44495235:+|4.012501421563882|0.0022127733867952|10.82|150.0|1|1|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 470.583674 1408.72919 0.10219 4.8088E-05 0.93233 0.00043874 1.0345 0.00048683 470.58406797943337 41.091 0.64864 44.597 44.294 44.942 3.506 0.036492 -3.5944E-05 NaN 7.0371 117 55 3 NaN NaN NaN NaN 0 NaN NaN 0 240710 14804 100 9533 9539 0.041176445937708195 ISWVWWHTPVV 11 Unmodified _ISWVWWHTPVV_ 0 0 0 AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense;AluSc8_dup14887|chr12:92129206-92129496:+|1.300430480862524|0.0452433812730274|4.85|151.0|11|3|sense;AluJr_dup33905|chr7:101846324-101846627:-|1.3290793412676245|0.0044208247090311|8.23|151.0|9|3|sense;AluJo_dup29229|chr7:74365757-74366077:-|1.0473300568878885|0.0166754098205945|5.97|151.0|2|1|sense;AluSc_dup11901|chr6:32441077-32441383:+|1.2022941789686248|0.403572247040847|1.57|148.0|12|3|sense;AluJr_dup2093|chr1:44494931-44495235:+|4.012501421563882|0.0022127733867952|10.82|150.0|1|1|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|8|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 470.583674 1408.72919 0.15221 7.1628E-05 0.95804 0.00045084 1.1102 0.00052246 470.584083141456 40.752 0.62364 44.493 44.156 44.78 3.7413 -0.067251 3.5015E-07 NaN 7.0371 129 61 3 NaN NaN NaN NaN 0 NaN NaN 0 263940 14805 100 9533 9539 0.041176445937708195 ISYERKLINRQ 11 Unmodified _ISYERKLINRQ_ 0 0 0 REV__ENSG00000112419.14,PHACTR2,chr6,+,I8.1,143760641,143765260|24|6.78|5|intron REV__ENSG00000112419.14,PHACTR2,chr6,+,I8.1,143760641,143765260|24|6.78|5|intron MSMS UPN46_class_I_Rep_3 1 474.28216552734375 3 473.940409 1418.7994 NaN NaN NaN NaN NaN NaN NaN 41.077 1 41.077 40.577 41.577 0 0 0 0 0.38417 1 8019 8019 1.2148 0.70888 1 + 14806 18485 9534 9540 18065 18065 0.10674898191609827 ISYLRTCP 8 Unmodified _ISYLRTCP_ 0 0 0 REV__ENST00000490075.5_1_1:17301417-17303350:-|nuORF REV__ENST00000490075.5_1_1:17301417-17303350:-|nuORF MSMS UPN48_class_I_Rep_2 6 476.749267578125 2 476.74967 951.484787 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.56 121.06 122.06 3.6627 0 0 0 0.40604 1 28262 28262 2.5775 0 1 + 14807 18623 9535 9541 18066 18066 0.007104425083412025 ISYYKQYY 8 Unmodified _ISYYKQYY_ 0 0 0 PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|17|2|sense PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|17|2|sense PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|17|2|sense MSMS UPN47_class_I_Rep_3 4 564.2730102539062 2 564.274032 1126.53351 NaN NaN NaN NaN NaN NaN NaN 116.54 1 120.01 119.51 120.51 3.462 0 0 0 0.40746 1 28684 28684 0.69038 0 1 14808 16889 9536 9542 18067 18067 -0.02469365650904365 ITACHLQQL 9 Unmodified _ITACHLQQL_ 0 0 0 ENSG00000174233|ENST00000357869|ADCY6;ENST00000552099.5_1_12:49167650-49168524:-|nuORF;ENST00000547260.5_1_12:49165333-49167887:-|nuORF ENSG00000174233|ENST00000357869|ADCY6 ENSG00000174233|ENST00000357869|ADCY6 MULTI-SECPEP UPN47_class_I_Rep_2 3 513.2704467773438 2 513.773677 1025.5328 0.10017 5.1464E-05 -2.4737 -0.0012709 -2.3735 -0.0012194 513.7726312852122 73.304 0.28207 76.601 76.367 76.65 3.2971 34 20 2 0 0 0 0.082517 1 17964 17964 25.399 6.1423 1 130500 14809 4672 9537 9543 18068 18068 0.021055164284007333 ITAETFYKLVS 11 Unmodified _ITAETFYKLVS_ 0 0 0 L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|81|3|sense L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|81|3|sense L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|81|3|sense MSMS UPN48_class_I_Rep_3 7 636.348388671875 2 636.347729 1270.6809 NaN NaN NaN NaN NaN NaN NaN 62.172 1 65.682 65.182 66.182 3.5104 0 0 0 0.38417 1 13798 13798 2.4985 0.43874 1 14810 11332 9538 9544 18069 18069 0.05639106163221186 ITAPRTNLY 9 Unmodified _ITAPRTNLY_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|56|2|sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 524.79248046875 2 524.792924 1047.57129 0.34435 0.00018071 -0.63254 -0.00033195 -0.28819 -0.00015124 524.7925521852543 37.818 0.60203 41.477 41.226 41.828 3.6595 94 60 2 0 0 0 0.38714 1 6472 6472 8.7454 1.4562 1 108310 + 14811 25286 9539 9545 18070 18070 0.049411453345555856 ITAPTVRQY 9 Unmodified _ITAPTVRQY_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MSMS UPN48_class_I_Rep_1 5 524.7920532226562 2 524.792924 1047.57129 0.32622 0.0001712 -0.58071 -0.00030475 -0.25448 -0.00013355 524.7925053877321 38.104 0.66457 41.609 41.341 42.006 3.5052 76 59 2 0 0 0 0.32682 1 6567 6567 12.241 2.8575 1 123010 14812 3731 9540 9546 18071 18071 0.049411453345555856 ITAPTVRQY 9 Unmodified _ITAPTVRQY_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MSMS UPN48_class_I_Rep_2 6 524.7924194335938 2 524.792924 1047.57129 0.35447 0.00018602 -0.27447 -0.00014404 0.079999 4.1983E-05 524.7926711388044 37.844 0.50005 41.56 41.3 41.8 3.7164 65 49 2 0 0 0 0.24936 2 6536 6463;6536 17.113 4.0704 1 119870 14813 3731 9540 9546 18072;18073 18073 0.049411453345555856 ITAPTVRQY 9 Unmodified _ITAPTVRQY_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MSMS UPN48_class_I_Rep_3 7 524.7925415039062 2 524.792924 1047.57129 0.34435 0.00018071 -0.63254 -0.00033195 -0.28819 -0.00015124 524.7925521852543 37.818 0.60203 41.477 41.226 41.828 3.6595 94 60 2 0 0 0 0.24936 1 6432 6432 17.113 3.2068 1 108310 14814 3731 9540 9546 18074 18074 0.049411453345555856 ITASAMHGPF 10 Unmodified _ITASAMHGPF_ 0 0 0 REV__MER58B_dup768|chr2:96626829-96627114:-|1.4669531193008216|0.1066131811055438|3.78|151.0|16|1|anti-sense REV__MER58B_dup768|chr2:96626829-96627114:-|1.4669531193008216|0.1066131811055438|3.78|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.2636108398438 2 516.252577 1030.4906 NaN NaN NaN NaN NaN NaN NaN 42.712 1 46.47 45.97 46.97 3.7579 0 0 0 0.53105 1 7941 7941 6.7232 0.36906 1 + 14815 31472 9541 9547 18075 18075 -0.02342458979978801 ITCCTHKFLY 10 Unmodified _ITCCTHKFLY_ 0 0 0 REV__MER11C_dup619|chr10:22565288-22566352:+|1.0470211447767872|0.0970884146436622|3.43|151.0|59|2|anti-sense REV__MER11C_dup619|chr10:22565288-22566352:+|1.0470211447767872|0.0970884146436622|3.43|151.0|59|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 614.7959594726562 2 614.796294 1227.57804 0.314 0.00019305 -0.58525 -0.00035981 -0.27125 -0.00016677 614.7959301574348 47.305 0.71014 50.656 50.294 51.004 3.3515 121 52 3 0 0 0 0.34145 3 10150 10150;10192;10228 29.082 21.537 1 512600 + 14816 31106 9542 9548 18076;18077;18078 18076 -0.026650011007177454 ITCCTHKFLY 10 Unmodified _ITCCTHKFLY_ 0 0 0 REV__MER11C_dup619|chr10:22565288-22566352:+|1.0470211447767872|0.0970884146436622|3.43|151.0|59|2|anti-sense REV__MER11C_dup619|chr10:22565288-22566352:+|1.0470211447767872|0.0970884146436622|3.43|151.0|59|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 614.7977294921875 2 614.796294 1227.57804 0.35448 0.00021793 -0.19822 -0.00012187 0.15626 9.6066E-05 614.7960976741346 47.42 0.66275 50.661 50.308 50.971 3.2405 120 53 3 0 0 0 0.34145 4 10289 10193;10233;10274;10289 34.402 12.655 1 415670 + 14817 31106 9542 9548 18079;18080;18081;18082 18082 -0.026650011007177454 ITCEYSDFY 9 Unmodified _ITCEYSDFY_ 0 0 0 REV__L1ME4b_dup21767|chr22:41842127-41842645:-|1.4538329507329617|0.0474496161867102|4.94|151.0|6|1|sense REV__L1ME4b_dup21767|chr22:41842127-41842645:-|1.4538329507329617|0.0474496161867102|4.94|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 570.730712890625 2 570.73134 1139.44813 NaN NaN NaN NaN NaN NaN NaN 65.019 1 68.374 67.874 68.874 3.3557 0 0 0 0.26661 1 15480 15480 12.532 0 1 + 14818 28287 9543 9549 18083 18083 -0.11601898898857144 ITCWMRLCSS 10 Unmodified _ITCWMRLCSS_ 0 0 0 ENST00000406341.5_1_3:9439651-9470595:+|nuORF ENST00000406341.5_1_3:9439651-9470595:+|nuORF ENST00000406341.5_1_3:9439651-9470595:+|nuORF MSMS UPN47_class_I_Rep_1 2 600.2728881835938 2 600.272129 1198.52971 NaN NaN NaN NaN NaN NaN NaN 61.319 1 64.7 64.2 65.2 3.3815 0 0 0 0.53105 1 14371 14371 1.1933 0.12188 1 14819 6612 9544 9550 18084 18084 -0.0616181801226503 ITDAYLDQY 9 Unmodified _ITDAYLDQY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7721557617188 2 551.258579 1100.50261 0.50721 0.0002796 0.25056 0.00013812 0.75777 0.00041773 551.2588938179553 56.241 0.6813 59.542 59.273 59.954 3.3009 73 39 3 0 0 0 0.057133 1 12891 12891 34.402 5.3201 1 122580 14820 4671 9545 9551 18085 18085 -0.043625637557852315 ITDAYLDQY 9 Unmodified _ITDAYLDQY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP UPN47_class_I_Rep_3 4 551.2735595703125 2 551.258579 1100.50261 0.39167 0.00021591 -0.30088 -0.00016586 0.090787 5.0047E-05 551.2585907334839 56.35 0.56947 59.522 59.278 59.847 3.1721 71 34 3 0 0 0 0.10629 1 12979 12979 17.113 4.0704 1 143020 14821 4671 9545 9551 18086 18086 -0.043625637557852315 ITDDLHFYV 9 Unmodified _ITDDLHFYV_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS UPN47_class_I_Rep_1 2 561.7769165039062 2 561.776939 1121.53933 0.38223 0.00021473 0.10198 5.7292E-05 0.48421 0.00027202 561.7768271935394 63.513 0.66899 66.872 66.574 67.243 3.3595 116 56 3 0 0 0 0.11683 1 14977 14977 30.637 9.7653 1 254760 14822 5352 9546 9552 18087 18087 -0.016582671392370685 ITDDLHFYV 9 Unmodified _ITDDLHFYV_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-SECPEP UPN47_class_I_Rep_2 3 562.3236694335938 2 561.776939 1121.53933 0.41158 0.00023122 -0.087275 -4.9029E-05 0.32431 0.00018219 561.7768018396531 63.723 0.50664 66.979 66.733 67.239 3.2556 80 44 3 0 0 0 0.06703 1 15152 15152 30.637 16.231 1 261190 14823 5352 9546 9552 18088 18088 -0.016582671392370685 ITDDLHFYV 9 Unmodified _ITDDLHFYV_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-SECPEP UPN47_class_I_Rep_3 4 562.3236694335938 2 561.776939 1121.53933 0.4262 0.00023943 0.098091 5.5105E-05 0.52429 0.00029453 561.7768417965668 63.802 0.67484 66.976 66.639 67.314 3.1741 94 56 2 0 0 0 0.050247 1 15263 15263 36.127 21.722 1 203530 14824 5352 9546 9552 18089 18089 -0.016582671392370685 ITDHGSLIY 9 Unmodified _ITDHGSLIY_ 0 0 0 nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 MULTI-MSMS UPN47_class_I_Rep_1 2 509.76361083984375 2 509.763832 1017.51311 -0.13955 -7.1136E-05 -0.025839 -1.3172E-05 -0.16539 -8.4308E-05 509.76373580808746 41.835 0.91343 45.514 45.182 46.095 3.6792 155 64 3 0 0 0 0.12799 2 8427 8427;8508 28.487 5.3384 1 500660 14825 2732 9547 9553 18090;18091 18090 0.005054636892964481 ITDHGSLIY 9 Unmodified _ITDHGSLIY_ 0 0 0 nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 MULTI-MSMS UPN47_class_I_Rep_2 3 509.7636413574219 2 509.763832 1017.51311 -0.22585 -0.00011513 0.096761 4.9325E-05 -0.12909 -6.5804E-05 509.7638195941304 42.208 1.0215 45.569 45.172 46.193 3.3611 175 73 3 0 0 0 0.09884 2 8591 8551;8591 34.102 5.6156 1 420190 14826 2732 9547 9553 18092;18093 18093 0.005054636892964481 ITDHGSLIY 9 Unmodified _ITDHGSLIY_ 0 0 0 nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 MULTI-MSMS UPN47_class_I_Rep_3 4 509.7637634277344 2 509.763832 1017.51311 -0.09852 -5.0222E-05 -0.070349 -3.5862E-05 -0.16887 -8.6084E-05 509.76376712634675 42.344 1.0371 45.584 45.177 46.214 3.2394 174 73 3 0 0 0 0.12799 2 8650 8650;8694 28.487 5.3384 1 418090 14827 2732 9547 9553 18094;18095 18094 0.005054636892964481 ITDIPVSRKPK 11 Unmodified _ITDIPVSRKPK_ 0 0 0 REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 627.3837890625 2 627.382437 1252.75032 0.49526 0.00031072 -0.32359 -0.00020302 0.17167 0.0001077 627.3827559436979 104.5 0.20726 108.2 108.17 108.38 3.6991 84 28 4 0 0 0 0.50573 1 24742 24742 7.609 2.3121 1 23534000 + 14828 24811 9548 9554 18096 18096 0.1340560990265658 ITDIPVSRKPK 11 Unmodified _ITDIPVSRKPK_ 0 0 0 REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 627.3817749023438 2 627.382437 1252.75032 0.60228 0.00037786 0.26603 0.0001669 0.86831 0.00054476 627.38260686119 105.02 0.28941 108.74 108.54 108.83 3.7192 64 42 2 0 0 0 0.59712 1 24772 24772 5.2969 2.3016 1 4065000 + 14829 24811 9548 9554 18097 18097 0.1340560990265658 ITDIPVSRKPK 11 Unmodified _ITDIPVSRKPK_ 0 0 0 REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 627.382437 1252.75032 0.55763 0.00034985 1.895 0.0011889 2.4527 0.0015388 627.384050340546 104.32 0.023911 108.09 108.07 108.09 3.7627 -0.055034 0.0024613 NaN 7.609 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 20632000 + 14830 24811 9548 9554 0.1340560990265658 ITDKAPRKK 9 Unmodified _ITDKAPRKK_ 0 0 0 REV__L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|78|3|sense REV__L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|78|3|sense MSMS UPN46_class_I_Rep_3 1 528.8302001953125 2 528.82984 1055.64513 NaN NaN NaN NaN NaN NaN NaN 79.027 1 79.027 78.527 79.527 0 0 0 0 0.38639 1 18543 18543 3.9444 1.6417 1 + 14831 25302 9549 9555 18098 18098 0.11953113496883816 ITDKNSLAY 9 Unmodified _ITDKNSLAY_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MSMS UPN47_class_I_Rep_1 2 512.76904296875 2 512.769114 1023.52368 -0.19173 -9.8313E-05 0.37021 0.00018983 0.17848 9.1521E-05 512.7692336645976 31.326 1.0599 35.056 34.751 35.811 3.7293 184 80 3 0 0 0 0.01093 7 5265 5165;5178;5186;5223;5265;5305;5408 69.338 23.639 1 653780 14832 4011 9550 9556 18099;18100;18101;18102;18103;18104;18105 18103 0.012854463436951846 ITDKNSLAY 9 Unmodified _ITDKNSLAY_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 512.769114 1023.52368 -0.28431 -0.00014579 0.38467 0.00019725 0.10036 5.1462E-05 512.7692128294275 31.549 1.0074 35.018 34.697 35.704 3.4691 -0.025559 3.0795E-06 NaN 69.338 196 82 3 NaN NaN NaN NaN 0 NaN NaN 0 606110 14833 4011 9550 9556 0.012854463436951846 ITDKNSLAY 9 Unmodified _ITDKNSLAY_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 512.769114 1023.52368 -0.32954 -0.00016898 0.38664 0.00019826 0.0571 2.9279E-05 512.7691895972972 31.757 1.2061 35.056 34.694 35.9 3.2991 0.013129 5.1001E-06 NaN 69.338 227 96 4 NaN NaN NaN NaN 0 NaN NaN 0 661750 14834 4011 9550 9556 0.012854463436951846 ITDQGIEFY 9 Unmodified _ITDQGIEFY_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS UPN47_class_I_Rep_2 3 543.2611694335938 2 543.261122 1084.50769 0.38399 0.00020861 0.0039412 2.1411E-06 0.38793 0.00021075 543.2610186910604 63.315 0.8504 66.571 66.176 67.026 3.2558 121 65 2 0 0 0 0.081756 1 14994 14994 38.176 3.7738 1 340570 14835 3219 9551 9557 18106 18106 -0.031182598931764005 ITDSAGHILY 10 Unmodified _ITDSAGHILY_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS UPN47_class_I_Rep_1 2 545.2822265625 2 545.282389 1088.55022 0.11626 6.3396E-05 -0.037994 -2.0718E-05 0.078268 4.2678E-05 545.2825348468735 43.948 2.2764 47.643 47.169 49.445 3.6951 404 142 5 0 0 0 8.4757E-09 6 9015 8975;9015;9055;9099;9141;9182 187.93 106.32 1 4620900 14836 4467 9552 9558 18107;18108;18109;18110;18111;18112 18108 0.009491352350551097 ITDSAGHILY 10 Unmodified _ITDSAGHILY_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS UPN47_class_I_Rep_2 3 545.282470703125 2 545.282389 1088.55022 0.14802 8.0711E-05 0.0051319 2.7983E-06 0.15315 8.351E-05 545.2825222326054 44.282 2.2604 47.638 47.125 49.386 3.3556 380 139 5 0 0 0 1.1456E-08 6 9263 9098;9145;9187;9224;9263;9301 196.65 132.41 1 4461000 14837 4467 9552 9558 18113;18114;18115;18116;18117;18118 18117 0.009491352350551097 ITDSAGHILY 10 Unmodified _ITDSAGHILY_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS UPN47_class_I_Rep_3 4 545.2824096679688 2 545.282389 1088.55022 0.18004 9.8174E-05 0.046414 2.5309E-05 0.22646 0.00012348 545.2825569169089 44.394 2.1073 47.638 47.186 49.293 3.2441 394 130 5 0 0 0 1.3239E-06 6 9403 9194;9232;9275;9321;9364;9403 187.93 116.8 1 4518300 14838 4467 9552 9558 18119;18120;18121;18122;18123;18124 18124 0.009491352350551097 ITDSTMCPKEH 11 Unmodified _ITDSTMCPKEH_ 0 0 0 nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4 nc|ENSG00000169933|Q14CM0|FRMPD4 nc|ENSG00000169933|Q14CM0|FRMPD4 MSMS UPN48_class_I_Rep_1 5 631.2791748046875 2 631.281205 1260.54786 NaN NaN NaN NaN NaN NaN NaN 22.152 1 25.705 25.205 26.205 3.5533 0 0 0 0.38417 1 2125 2125 0.96228 0.36078 1 14839 4447 9553 9559 18125 18125 -0.07199404556581612 ITEAARFIR 9 Unmodified _ITEAARFIR_ 0 0 0 REV__L1MC1_dup1607|chr2:127785149-127786033:-|1.839376587492992|0.0413287132023649|5.48|151.0|29|3|sense REV__L1MC1_dup1607|chr2:127785149-127786033:-|1.839376587492992|0.0413287132023649|5.48|151.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 538.8141479492188 2 538.81419 1075.61383 0.42755 0.00023037 -0.1569 -8.4537E-05 0.27066 0.00014583 538.814123603774 55.53 0.78532 59.038 58.706 59.491 3.5082 103 52 3 0 0 0 0.36392 1 11930 11930 10.074 1.3285 1 303210 + 14840 26529 9554 9560 18126 18126 0.07904540462777732 ITEIERSLY 9 Unmodified _ITEIERSLY_ 0 0 0 REV__L1MEa_dup392|chr22:45741713-45742663:+|1.0930915497203266|0.2401821268269906|2.19|151.0|10|1|sense REV__L1MEa_dup392|chr22:45741713-45742663:+|1.0930915497203266|0.2401821268269906|2.19|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.31884765625 2 562.303321 1122.59209 0.35482 0.00019952 -0.34473 -0.00019385 0.010089 5.6733E-06 562.303067114071 55.784 1.0762 59.263 58.78 59.856 3.4785 132 58 3 0 0 0 0.10817 2 12633 12633;12672 32.305 5.4218 1 396420 + 14841 28336 9555 9561 18127;18128 18127 0.035696909235639396 ITEIERSLY 9 Unmodified _ITEIERSLY_ 0 0 0 REV__L1MEa_dup392|chr22:45741713-45742663:+|1.0930915497203266|0.2401821268269906|2.19|151.0|10|1|sense REV__L1MEa_dup392|chr22:45741713-45742663:+|1.0930915497203266|0.2401821268269906|2.19|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.3186645507812 2 562.303321 1122.59209 0.51828 0.00029143 -0.45111 -0.00025366 0.067165 3.7767E-05 562.3029775081918 55.99 1.0702 59.295 58.855 59.925 3.3046 158 63 3 0 0 0 0.074367 2 12789 12748;12789 39.957 5.8549 1 411620 + 14842 28336 9555 9561 18129;18130 18130 0.035696909235639396 ITEIERSLY 9 Unmodified _ITEIERSLY_ 0 0 0 REV__L1MEa_dup392|chr22:45741713-45742663:+|1.0930915497203266|0.2401821268269906|2.19|151.0|10|1|sense REV__L1MEa_dup392|chr22:45741713-45742663:+|1.0930915497203266|0.2401821268269906|2.19|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.318603515625 2 562.303321 1122.59209 0.40353 0.00022691 -0.32923 -0.00018513 0.074298 4.1778E-05 562.3030353278743 56.145 0.97464 59.317 58.892 59.867 3.1721 153 62 3 0 0 0 0.10817 3 12805 12805;12843;12884 32.305 5.4218 1 358090 + 14843 28336 9555 9561 18131;18132;18133 18131 0.035696909235639396 ITEKSCKCK 9 Unmodified _ITEKSCKCK_ 0 0 0 nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91 nc|ENSG00000167232|Q05481-2|ZNF91 nc|ENSG00000167232|Q05481-2|ZNF91 MULTI-SECPEP UPN48_class_I_Rep_3 7 520.31103515625 2 520.26737 1038.52019 0.30822 0.00016036 -0.74274 -0.00038642 -0.43452 -0.00022607 520.2672759652866 45.27 0.6262 48.907 48.551 49.177 3.6372 73 41 2 0 0 0 0.087255 1 8642 8642 18.146 18.146 1 309230 14844 4293 9556 9562 18134 18134 0.0024673697382695536 ITFDTILEI 9 Unmodified _ITFDTILEI_ 0 0 0 Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 532.7976684570312 2 532.79734 1063.58013 0.41904 0.00022326 0.3588 0.00019117 0.77783 0.00041443 532.7975305906459 84.419 0.35738 87.984 87.788 88.145 3.5655 70 44 3 0 0 0 0.090251 1 21136 21136 36.127 5.4905 1 1831200 14845 466 9557 9563 18135 18135 0.05088074180366675 ITFDTILEI 9 Unmodified _ITFDTILEI_ 0 0 0 Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 532.7975463867188 2 532.79734 1063.58013 0.40583 0.00021622 0.61634 0.00032838 1.0222 0.00054461 532.7976547302817 84.562 0.49592 87.985 87.741 88.237 3.4232 90 70 2 0 0 0 0.061943 1 21090 21090 43.858 5.8843 1 335690 14846 466 9557 9563 18136 18136 0.05088074180366675 ITFDTILEI 9 Unmodified _ITFDTILEI_ 0 0 0 Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense Charlie1a_dup2659|chr7:129628299-129629277:-|1.6887718992155707|0.322054051382258|2.39|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_3 4 532.7977294921875 2 532.79734 1063.58013 NaN NaN NaN NaN NaN NaN NaN 84.879 1 88.241 87.741 88.741 3.3615 0 0 0 7.1979E-10 1 21299 21299 81.613 10.479 1 14847 466 9557 9563 18137 18137 0.05088074180366675 ITFFLHKFC 9 Unmodified _ITFFLHKFC_ 0 0 0 HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|117|3|anti-sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|117|3|anti-sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|117|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 578.306640625 2 578.304613 1154.59467 0.47544 0.00027495 2.5087 0.0014508 2.9841 0.0017257 578.3063308581211 76.312 0.047165 76.312 76.289 76.337 0 4 2 2 0 0 0 0.41259 1 17798 17798 7.2892 0 1 198970 14848 8226 9558 9564 18138 18138 0.02355867847541049 ITFPFRKKQA 10 Unmodified _ITFPFRKKQA_ 0 0 0 REV__Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|14|1|sense REV__Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 618.4061889648438 2 618.36659 1234.71863 NaN NaN NaN NaN NaN NaN NaN 81.152 1 81.152 80.652 81.652 0 0 0 0 0.53105 1 19151 19151 1.4819 0.95714 1 + 14849 32347 9559 9565 18139 18139 0.1106566193936942 ITGVHFALEL 10 Unmodified _ITGVHFALEL_ 0 0 0 ENST00000379561.5_1_13:41134633-41239748:-|nuORF ENST00000379561.5_1_13:41134633-41239748:-|nuORF ENST00000379561.5_1_13:41134633-41239748:-|nuORF MSMS UPN47_class_I_Rep_3 4 550.31103515625 2 550.310949 1098.60735 NaN NaN NaN NaN NaN NaN NaN 67.983 1 71.18 70.68 71.68 3.1977 0 0 0 0.53105 1 16491 16491 3.2813 0.28607 1 14850 6478 9560 9566 18140 18140 0.06198602511403806 ITGVLIRRD 9 Unmodified _ITGVLIRRD_ 0 0 0 MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|7|2|sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|7|2|sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 521.822265625 2 521.822015 1041.62948 0.22918 0.00011959 0.89393 0.00046647 1.1231 0.00058607 521.8221452833366 107.63 0.032585 111.17 111.15 111.18 3.5345 6 4 2 0 0 0 0.30034 1 26048 26048 13.906 3.0821 1 1285200 14851 16317 9561 9567 18141 18141 0.11032826979840138 ITHEIAAPFSK 11 Unmodified _ITHEIAAPFSK_ 0 0 0 REV__nc|ENSG00000033178|A0AVT1-2|UBA6 REV__nc|ENSG00000033178|A0AVT1-2|UBA6 MSMS UPN46_class_I_Rep_3 1 607.5330200195312 2 607.332413 1212.65027 NaN NaN NaN NaN NaN NaN NaN 44.49 1 44.49 43.99 44.99 0 0 0 0 0.38417 1 8971 8971 1.1933 0 1 + 14852 17630 9562 9568 18142 18142 0.05245372568833773 ITHGRFHNI 9 Unmodified _ITHGRFHNI_ 0 0 0 L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 547.7960815429688 2 547.796332 1093.57811 0.49584 0.00027162 -1.3524 -0.00074085 -0.85659 -0.00046923 547.7953531491103 55.683 0.74262 58.993 58.731 59.474 3.3102 58 43 2 0 0 0 0.41259 1 12710 12710 7.2892 0.56607 1 119760 14853 13259 9563 9569 18143 18143 0.03506503005792183 ITHKKNKIGNI 11 Unmodified _ITHKKNKIGNI_ 0 0 0 REV__L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|12|1|sense REV__L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 633.3855590820312 2 633.388054 1264.76155 NaN NaN NaN NaN NaN NaN NaN 47.535 1 51.057 50.557 51.557 3.5219 0 0 0 0.38417 1 9404 9404 0.26902 0 1 + 14854 30554 9564 9570 18144 18144 0.13976431996798055 ITHKLARVKKK 11 Unmodified _ITHKLARVKKK_ 0 0 0 REV__L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense REV__L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense MSMS UPN47_class_I_Rep_3 4 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.628 1 31.962 31.462 32.462 3.3337 0 0 0 0.38417 1 4517 4517 0.45452 0.31463 1 + 14855 28372 9565 9571 18145 18145 0.22417277055819795 ITHKLARVKKK 11 Unmodified _ITHKLARVKKK_ 0 0 0 REV__L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense REV__L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense MSMS UPN48_class_I_Rep_3 7 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.873 1 45.519 45.019 46.019 3.6458 0 0 0 0.38417 1 7612 7612 0.45452 0.35968 1 + 14856 28372 9565 9571 18146 18146 0.22417277055819795 ITHLVRNL 8 Unmodified _ITHLVRNL_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP UPN48_class_I_Rep_3 7 483.29827880859375 2 483.298176 964.581799 0.15741 7.6077E-05 0.14728 7.1182E-05 0.3047 0.00014726 483.2982434734977 57.663 0.041988 61.195 61.182 61.224 3.5317 5 3 2 0 0 0 0.72333 1 12431 12431 18.135 4.6271 1 137540 + 14857 20043 9566 9572 18147 18147 0.09809172779637265 ITHLVRTA 8 Unmodified _ITHLVRTA_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MSMS UPN47_class_I_Rep_2 3 455.7767028808594 2 455.777077 909.5396 NaN NaN NaN NaN NaN NaN NaN 119.91 1 123.39 122.89 123.89 3.4793 0 0 0 0.40746 1 29389 29389 0.69038 0 1 14858 2076 9567 9573 18148 18148 0.08121197371258404 ITHTLNLDKI 10 Unmodified _ITHTLNLDKI_ 0 0 0 nc|ENSG00000172955|P28332|ADH6;ENSG00000172955|ENST00000394899|ADH6 nc|ENSG00000172955|P28332|ADH6 nc|ENSG00000172955|P28332|ADH6 MSMS UPN48_class_I_Rep_2 6 584.3428955078125 2 584.340238 1166.66592 NaN NaN NaN NaN NaN NaN NaN 58.204 1 61.702 61.202 62.202 3.4987 0 0 0 0.53105 1 12657 12657 9.544 1.3884 1 14859 4601 9568 9574 18149 18149 0.08925659085889492 ITIGFVNYY 9 Unmodified _ITIGFVNYY_ 0 0 0 REV__L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|78|3|anti-sense REV__L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|78|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.7835083007812 2 545.2844 1088.55425 0.29478 0.00016074 -3.3916 -0.0018494 -3.0968 -0.0016886 545.2825759002324 46.665 0.43165 49.909 49.748 50.179 3.2439 29 27 2 0 0 0 0.12354 1 10065 10065 3.5965 0.31518 1 42653 + 14860 24703 9569 9575 18150 18150 0.013512247287508217 ITILFHFSY 9 Unmodified _ITILFHFSY_ 0 0 0 REV__MER21-int_dup454|chr8:130067932-130069243:+|1.077285301206328|0.0278856367702732|5.27|151.0|75|3|anti-sense REV__MER21-int_dup454|chr8:130067932-130069243:+|1.077285301206328|0.0278856367702732|5.27|151.0|75|3|anti-sense MSMS UPN48_class_I_Rep_3 7 570.8071899414062 2 570.808042 1139.60153 NaN NaN NaN NaN NaN NaN NaN 55.639 1 59.195 58.695 59.695 3.5554 0 0 0 0.38639 1 11814 11814 3.9444 0.3479 1 + 14861 31175 9570 9576 18151 18151 0.03731503999756569 ITINVKNHY 9 Unmodified _ITINVKNHY_ 0 0 0 REV__Tigger1_dup8162|chr10:74236657-74237816:-|1.2223331368691783|0.0091028438895083|7.07|149.0|42|1|anti-sense REV__Tigger1_dup8162|chr10:74236657-74237816:-|1.2223331368691783|0.0091028438895083|7.07|149.0|42|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7724609375 2 551.306198 1100.59784 0.50702 0.00027953 -0.49762 -0.00027434 0.0094015 5.1831E-06 551.3057611036643 56.619 0.48792 59.92 59.638 60.126 3.3009 43 31 2 0 0 0 0.11959 1 13016 13016 7.9102 1.7044 1 155180 + 14862 32537 9571 9577 18152 18152 0.051568342258860866 ITIPLTTVL 9 Unmodified _ITIPLTTVL_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MSMS UPN47_class_I_Rep_3 4 485.8114929199219 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 73.665 1 76.901 76.401 77.401 3.2363 0 0 0 0.38478 1 18206 18206 4.3292 0 1 + 14863 20331 9572 9578 18153 18153 0.12501272285260256 ITIRPRNPITV 11 Unmodified _ITIRPRNPITV_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 640.8955688476562 2 640.395879 1278.7772 0.45011 0.00028825 -4.0506 -0.002594 -3.6005 -0.0023058 640.8951065840567 51.647 0.064827 55.169 55.139 55.204 3.5227 6 5 2 0 0 0 22.551 1 10678 10678 0.96228 0.43751 1 491930 14864 15456 9573 9579 18154 18154 0.14896718513841734 ITIRPRNPITV 11 Unmodified _ITIRPRNPITV_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense MSMS UPN48_class_I_Rep_2 6 640.3936157226562 2 640.395879 1278.7772 NaN NaN NaN NaN NaN NaN NaN 51.673 1 55.312 54.812 55.812 3.639 0 0 0 0.38417 1 10673 10673 2.086 0.43339 1 14865 15456 9573 9579 18155 18155 0.14896718513841734 ITIRPRNPITV 11 Unmodified _ITIRPRNPITV_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|126|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 640.395879 1278.7772 0.54035 0.00034604 -4.9274 -0.0031555 -4.387 -0.0028094 640.3919941397571 51.816 0.050236 55.022 54.983 55.033 3.2055 -0.07394 -0.00081521 NaN 0.96228 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 84359 14866 15456 9573 9579 0.14896718513841734 ITIVRHLQY 9 Unmodified _ITIVRHLQY_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN48_class_I_Rep_1 5 571.8384399414062 2 571.837665 1141.66078 0.41528 0.00023748 -0.29871 -0.00017081 0.11658 6.6662E-05 571.8374529410785 42.613 0.75207 46.121 45.783 46.535 3.5079 126 60 3 0 0 0 0.066364 5 7901 7823;7865;7901;7953;7993 41.956 23.809 1 266990 14867 1994 9574 9580 18156;18157;18158;18159;18160 18158 0.09561400013944876 ITIVRHLQY 9 Unmodified _ITIVRHLQY_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN48_class_I_Rep_2 6 571.8377685546875 2 571.837665 1141.66078 0.4181 0.00023908 -0.22976 -0.00013139 0.18834 0.0001077 571.8374403420353 42.254 0.81922 46.012 45.663 46.482 3.7579 141 78 2 0 0 0 0.05757 6 7760 7714;7722;7760;7795;7873;7875 45.74 26.378 1 294180 14868 1994 9574 9580 18161;18162;18163;18164;18165;18166 18163 0.09561400013944876 ITIVRHLQY 9 Unmodified _ITIVRHLQY_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN48_class_I_Rep_3 7 571.837646484375 2 571.837665 1141.66078 0.38249 0.00021872 -0.22942 -0.00013119 0.15307 8.7534E-05 571.83743863049 42.406 0.7708 46.047 45.732 46.503 3.6415 115 62 2 0 0 0 0.026395 4 7742 7702;7742;7786;7864 59.368 35.579 1 260100 14869 1994 9574 9580 18167;18168;18169;18170 18168 0.09561400013944876 ITKARRPRTV 10 Unmodified _ITKARRPRTV_ 0 0 0 REV__L1PBa_dup337|chr3:15749412-15749950:-|4.826506500041148|0.0627439995238453|6.27|151.0|3|1|sense REV__L1PBa_dup337|chr3:15749412-15749950:-|4.826506500041148|0.0627439995238453|6.27|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.3787841796875 2 599.380563 1196.74657 0.63462 0.00038038 -0.82034 -0.0004917 -0.18572 -0.00011132 599.3801386160488 95.431 0.43913 98.906 98.686 99.125 3.4753 110 60 2 0 0 0 0.55448 1 23491 23491 4.897 1.6157 1 585460 + 14870 30651 9575 9581 18171 18171 0.15606984919440947 ITKCMNLQF 9 Unmodified _ITKCMNLQF_ 0 0 0 REV__MER20B_dup870|chr3:121883274-121883752:-|1.0797732907998636|0.063262108821836|4.09|151.0|19|1|anti-sense REV__MER20B_dup870|chr3:121883274-121883752:-|1.0797732907998636|0.063262108821836|4.09|151.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 548.8355712890625 2 549.277738 1096.54092 NaN NaN NaN NaN NaN NaN NaN 43.489 1 43.489 42.989 43.989 0 0 0 0 0.39518 1 8687 8687 1.8442 0 1 + 14871 31167 9576 9582 18172 18172 -0.0034867264650984 ITKIEPVTF 9 Unmodified _ITKIEPVTF_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS UPN48_class_I_Rep_1 5 524.3070678710938 2 524.307875 1046.6012 0.33558 0.00017595 -0.66448 -0.00034839 -0.3289 -0.00017245 524.3074956916486 70.342 0.28584 73.802 73.595 73.881 3.4598 34 21 2 0 0 0 0.33908 1 16340 16340 11.495 0.6952 1 128020 + 14872 17945 9577 9583 18173 18173 0.07976084279880524 ITKIPAKKTK 10 Unmodified _ITKIPAKKTK_ 0 0 0 REV__ENSG00000067445|ENST00000173898|TRO REV__ENSG00000067445|ENST00000173898|TRO MULTI-MSMS UPN47_class_I_Rep_1 2 564.3795166015625 2 564.379166 1126.74378 0.50087 0.00028268 0.11172 6.3052E-05 0.61258 0.00034573 564.3790126210292 108.24 0.63995 111.87 111.52 112.16 3.6355 153 56 4 0 0 0 0.56354 1 26647 26647 1.3295 0.72803 1 7582000 + 14873 17776 9578 9584 18174 18174 0.18547716741932163 ITKKTKKN 8 Unmodified _ITKKTKKN_ 0 0 0 REV__L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|66|3|sense REV__L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|66|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.8133239746094 2 480.813659 959.612765 -0.21293 -0.00010238 -0.36126 -0.0001737 -0.57419 -0.00027608 480.8133552624228 14.277 0.42286 17.664 17.558 17.98 3.3871 121 52 3 0 0 0 0.82752 1 547 547 19.257 1.1106 1 250870 + 14874 26072 9579 9585 18175 18175 0.13134326093904747 ITKPVRRT 8 Unmodified _ITKPVRRT_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MSMS UPN47_class_I_Rep_1 2 485.81231689453125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.792 1 76.172 75.672 76.672 3.3799 0 0 0 0.4044 1 17834 17834 4.756 2.1785 1 14875 3372 9580 9586 18176 18176 0.12232861670997863 ITKTTLKR 8 Unmodified _ITKTTLKR_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|22|3|sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.8131103515625 2 480.813659 959.612765 -0.37751 -0.00018151 -0.048528 -2.3333E-05 -0.42604 -0.00020484 480.81350704758273 14.201 0.59093 17.676 17.553 18.144 3.475 169 72 4 0 0 0 0.82752 1 496 496 13.906 1.6654 1 296790 + 14876 28345 9581 9587 18177 18177 0.13134326093893378 ITKTTLKR 8 Unmodified _ITKTTLKR_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|22|3|sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.8130187988281 2 480.813659 959.612765 -0.21293 -0.00010238 -0.36126 -0.0001737 -0.57419 -0.00027608 480.8133552624228 14.277 0.42286 17.664 17.558 17.98 3.3871 121 52 3 0 0 0 0.82752 1 517 517 9.3831 0 1 250870 + 14877 28345 9581 9587 18178 18178 0.13134326093893378 ITKTTLKR 8 Unmodified _ITKTTLKR_ 0 0 0 REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|22|3|sense REV__L1MEc_dup1031|chr1:155417973-155418787:+|1.2695031803681227|0.0327390914253058|5.28|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.813232421875 2 480.813659 959.612765 -0.77298 -0.00037166 0.15515 7.4596E-05 -0.61784 -0.00029707 480.8135866247236 14.321 0.60586 17.691 17.574 18.179 3.3697 150 72 3 0 0 0 0.82752 1 507 507 9.3831 0 1 201290 + 14878 28345 9581 9587 18179 18179 0.13134326093893378 ITLHTSWMAIV 11 Unmodified _ITLHTSWMAIV_ 0 0 0 L1MB8_dup14757|chr18:193429-194154:-|2.2748589392310463|0.3479166708111966|2.71|150.0|19|3|sense L1MB8_dup14757|chr18:193429-194154:-|2.2748589392310463|0.3479166708111966|2.71|150.0|19|3|sense L1MB8_dup14757|chr18:193429-194154:-|2.2748589392310463|0.3479166708111966|2.71|150.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 636.3450927734375 2 636.344466 1270.67438 NaN NaN NaN NaN NaN NaN NaN 76.471 1 79.793 79.293 80.293 3.3216 0 0 0 0.38417 1 18931 18931 1.3295 0.13619 1 14879 10953 9582 9588 18180 18180 0.04986889730867006 ITLIILDTA 9 Unmodified _ITLIILDTA_ 0 0 0 REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 486.802490234375 2 486.802426 971.590298 0.22796 0.00011097 -0.47311 -0.00023031 -0.24515 -0.00011934 486.80234938118986 88.883 0.14683 92.539 92.459 92.606 3.6563 24 19 2 0 0 0 0.42249 1 22214 22214 6.7232 0 1 44859 + 14880 27822 9583 9589 18181 18181 0.10336681905607747 ITLIILDTA 9 Unmodified _ITLIILDTA_ 0 0 0 REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_1 2 486.802490234375 2 486.802426 971.590298 NaN NaN NaN NaN NaN NaN NaN 88.415 1 92.071 91.571 92.571 3.6563 0 0 0 0.31276 1 22111 22111 10.074 0 1 + 14881 27822 9583 9589 18182 18182 0.10336681905607747 ITLIILDTA 9 Unmodified _ITLIILDTA_ 0 0 0 REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 486.802426 971.590298 0.22796 0.00011097 -0.47311 -0.00023031 -0.24515 -0.00011934 486.80234938118986 88.883 0.14683 92.539 92.459 92.606 3.6563 0.13716 1.4508E-05 NaN 6.7232 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 44859 + 14882 27822 9583 9589 0.10336681905607747 ITLIILDTA 9 Unmodified _ITLIILDTA_ 0 0 0 REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 486.802426 971.590298 0.38758 0.00018867 -0.43879 -0.0002136 -0.051213 -2.493E-05 486.80227029227217 88.814 0.11737 92.267 92.194 92.312 3.4525 -0.13515 4.7924E-05 NaN 6.7232 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 106910 + 14883 27822 9583 9589 0.10336681905607747 ITLIILDTA 9 Unmodified _ITLIILDTA_ 0 0 0 REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense REV__L1ME2_dup11155|chr17:2159447-2160176:+|1.4991194931924676|0.012251108717811|6.94|151.0|38|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 486.802426 971.590298 0.20543 0.0001 -0.66813 -0.00032525 -0.4627 -0.00022524 486.8023324341642 89.007 0.14411 92.4 92.307 92.451 3.3931 -0.0020092 -0.00017536 NaN 6.7232 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 79408 + 14884 27822 9583 9589 0.10336681905607747 ITLSRPRT 8 Unmodified _ITLSRPRT_ 0 0 0 REV__L1MA2_dup1716|chr4:73175451-73176536:+|1.05412567519553|0.0174883996326986|5.91|150.0|32|3|sense REV__L1MA2_dup1716|chr4:73175451-73176536:+|1.05412567519553|0.0174883996326986|5.91|150.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.2877502441406 2 472.287808 942.561064 0.18122 8.5587E-05 -0.05347 -2.5253E-05 0.12775 6.0333E-05 472.28771761839243 86.289 1.5919 89.905 89.439 91.031 3.6153 534 196 4 0 0 0 0.82752 1 21509 21509 7.2892 7.2892 1 5200400 + 14885 24837 9584 9590 18183 18183 0.08748582400005489 ITLVCFFWL 9 Unmodified _ITLVCFFWL_ 0 0 0 REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|221|1|anti-sense REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|221|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 571.3110961914062 2 571.309364 1140.60417 0.34024 0.00019438 1.987 0.0011352 2.3273 0.0013296 571.3103428505793 65.147 0.41605 68.503 68.376 68.792 3.3557 45 26 2 0 0 0 0.32219 1 15551 15551 12.532 0.89125 1 72526 + 14886 24990 9585 9591 18184 18184 0.03949636133052081 ITLVCFFWL 9 Unmodified _ITLVCFFWL_ 0 0 0 REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|221|1|anti-sense REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|221|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 571.310791015625 2 571.309364 1140.60417 0.3779 0.0002159 1.9419 0.0011094 2.3198 0.0013253 571.3103402472306 65.223 0.3008 68.478 68.282 68.583 3.2556 36 23 2 0 0 0 0.32219 1 15568 15568 12.532 0.89125 1 95126 + 14887 24990 9585 9591 18185 18185 0.03949636133052081 ITLVLLLILA 10 Unmodified _ITLVLLLILA_ 0 0 0 L1MC1_dup4951|chr6:2261131-2263724:-|1.9602021019502816|0.0279465366686829|6.13|151.0|146|2|anti-sense L1MC1_dup4951|chr6:2261131-2263724:-|1.9602021019502816|0.0279465366686829|6.13|151.0|146|2|anti-sense L1MC1_dup4951|chr6:2261131-2263724:-|1.9602021019502816|0.0279465366686829|6.13|151.0|146|2|anti-sense MSMS UPN46_class_I_Rep_3 1 541.4511108398438 2 541.383386 1080.75222 NaN NaN NaN NaN NaN NaN NaN 92.031 1 92.031 91.531 92.531 0 0 0 0 0.53105 1 22256 22256 0 0 1 14888 11158 9586 9592 18186 18186 0.2150727065859428 ITLYVRPET 9 Unmodified _ITLYVRPET_ 0 0 0 REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|95|3|sense REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|95|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.3093872070312 2 546.308406 1090.60226 0.42994 0.00023488 0.46485 0.00025395 0.89479 0.00048883 546.3085970236062 75.034 0.74088 78.428 77.749 78.49 3.3937 113 67 3 0 0 0 0.21527 1 18368 18368 19.257 1.1106 1 745800 + 14889 23565 9587 9593 18187 18187 0.06058298648804339 ITMISLPIIHK 11 Unmodified _ITMISLPIIHK_ 0 0 0 REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|10|1|sense REV__Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 422.59246826171875 3 422.593181 1264.75771 NaN NaN NaN NaN NaN NaN NaN 59.354 1 62.841 62.341 63.341 3.4868 0 0 0 0.38417 1 13012 13012 2.4348 1.1051 1 + 14890 32706 9588 9594 18188 18188 0.13592626178706269 ITMSRSRPL 9 Unmodified _ITMSRSRPL_ 0 0 0 REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24 REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24 MSMS UPN47_class_I_Rep_1 2 530.7997436523438 2 530.800226 1059.5859 NaN NaN NaN NaN NaN NaN NaN 81.93 1 85.442 84.942 85.942 3.5122 0 0 0 0.36505 1 20459 20459 7.2892 0 1 + 14891 21093 9589 9595 18189 18189 0.058488942110670905 ITMSVGEYV 9 Unmodified _ITMSVGEYV_ 0 0 0 L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|21|2|sense L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|21|2|sense L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.74688720703125 2 499.746793 997.479033 0.21735 0.00010862 -0.6112 -0.00030545 -0.39386 -0.00019683 499.74677380518455 64.067 0.81366 67.241 66.796 67.61 3.1741 115 62 2 0 0 0 0.35081 1 15213 15213 10.824 0 1 109100 14892 10901 9590 9596 18190 18190 -0.019807007939675714 ITMTLPYF 8 Unmodified _ITMTLPYF_ 0 0 0 REV__HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|97|2|sense REV__HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|97|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 493.7865905761719 2 493.256797 984.499041 0.30307 0.00014949 -1.2997 -0.00064106 -0.99658 -0.00049157 493.25622076887674 109.76 0.18651 109.76 109.67 109.86 0 20 16 2 0 0 0 0.72333 1 26972 26972 2.3027 0 1 523180 + 14893 23909 9591 9597 18191 18191 0.006170949366378409 ITMWLSKRL 9 Unmodified _ITMWLSKRL_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MSMS UPN48_class_I_Rep_1 5 574.3368530273438 2 574.336444 1146.65834 NaN NaN NaN NaN NaN NaN NaN 49.437 1 52.961 52.461 53.461 3.5246 0 0 0 0.38639 1 9990 9990 3.9444 1.6417 1 14894 5444 9592 9598 18192 18192 0.09087228284647608 ITNHAHIY 8 Unmodified _ITNHAHIY_ 0 0 0 REV__nc|ENSG00000263528|Q14164-2|IKBKE REV__nc|ENSG00000263528|Q14164-2|IKBKE MSMS UPN48_class_I_Rep_1 5 484.75311279296875 2 484.751059 967.487565 NaN NaN NaN NaN NaN NaN NaN 24.346 1 27.911 27.411 28.411 3.5655 0 0 0 0.40738 1 2675 2675 0.79363 0 1 + 14895 21404 9593 9599 18193 18193 0.0025203395751987046 ITNHGFLIY 9 Unmodified _ITNHGFLIY_ 0 0 0 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MSMS UPN48_class_I_Rep_1 5 539.2904052734375 2 539.290017 1076.56548 NaN NaN NaN NaN NaN NaN NaN 59.168 1 62.648 62.148 63.148 3.4801 0 0 0 0.10315 1 12977 12977 24.021 2.2739 1 14896 2739 9594 9600 18194 18194 0.030260468229243997 ITNKASILFY 10 Unmodified _ITNKASILFY_ 0 0 0 REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|50|1|anti-sense REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_2 3 585.3299560546875 2 585.331882 1168.64921 NaN NaN NaN NaN NaN NaN NaN 71.947 1 75.237 74.737 75.737 3.2899 0 0 0 0.53105 1 17611 17611 1.8442 0.36234 1 + 14897 25680 9595 9601 18195 18195 0.07163158199955433 ITNKYQLVF 9 Unmodified _ITNKYQLVF_ 0 0 0 ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3 ENST00000563573.5_1_16:22361166-22444153:-|nuORF ENST00000563573.5_1_16:22361166-22444153:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 563.3189697265625 2 563.318774 1124.623 0.376 0.00021181 -0.46092 -0.00025964 -0.084916 -4.7835E-05 563.3187253841926 61.545 0.37688 61.545 61.416 61.793 0 48 35 2 0 0 0 0.31407 1 13753 13753 13.042 2.9685 1 142090 14898 1266 9596 9602 18196 18196 0.06566889028476908 ITNKYQLVF 9 Unmodified _ITNKYQLVF_ 0 0 0 ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3 ENST00000563573.5_1_16:22361166-22444153:-|nuORF ENST00000563573.5_1_16:22361166-22444153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 563.31884765625 2 563.318774 1124.623 0.35081 0.00019762 -0.27287 -0.00015371 0.077941 4.3905E-05 563.3185255374627 55.638 1.2112 59.117 58.664 59.876 3.4785 198 69 4 0 0 0 0.095207 3 12595 12553;12595;12772 34.932 7.0112 1 1082200 14899 1266 9596 9602 18197;18198;18199 18198 0.06566889028476908 ITNKYQLVF 9 Unmodified _ITNKYQLVF_ 0 0 0 ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3 ENST00000563573.5_1_16:22361166-22444153:-|nuORF ENST00000563573.5_1_16:22361166-22444153:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 563.318774 1124.623 0.5183 0.00029197 -0.45478 -0.00025619 0.063515 3.5779E-05 563.3184146813186 55.949 1.2747 59.259 58.705 59.979 3.3102 0.06279 -0.00010149 NaN 34.932 186 74 4 NaN NaN NaN NaN 0 NaN NaN 0 1061200 14900 1266 9596 9602 0.06566889028476908 ITNKYQLVF 9 Unmodified _ITNKYQLVF_ 0 0 0 ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3 ENST00000563573.5_1_16:22361166-22444153:-|nuORF ENST00000563573.5_1_16:22361166-22444153:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 563.318774 1124.623 0.40424 0.00022772 -0.37246 -0.00020981 0.031782 1.7904E-05 563.3184180633222 56.041 1.0425 59.213 58.805 59.847 3.1721 0.016827 -8.7366E-06 NaN 34.932 214 66 4 NaN NaN NaN NaN 0 NaN NaN 0 982980 14901 1266 9596 9602 0.06566889028476908 ITNQRNKI 8 Unmodified _ITNQRNKI_ 0 0 0 Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|94|1|anti-sense Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|94|1|anti-sense Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|94|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.8073425292969 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 68.726 1 71.996 71.496 72.496 3.2696 0 0 0 0.39819 1 16649 16649 8.5933 0 1 14902 33149 9597 9603 18200 18200 0.07351680911654057 ITNYLEHCVA 10 Unmodified _ITNYLEHCVA_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-6|PBRM1 REV__nc|ENSG00000163939|Q86U86-6|PBRM1 MSMS UPN47_class_I_Rep_2 3 581.7688598632812 2 581.781699 1161.54884 NaN NaN NaN NaN NaN NaN NaN 74.088 1 77.393 76.893 77.893 3.3048 0 0 0 0.53105 1 18246 18246 10.824 4.1008 1 + 14903 20020 9598 9604 18201 18201 -0.025468221253504453 ITPKYKRQIPW 11 Unmodified _ITPKYKRQIPW_ 0 0 0 REV__L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|31|3|sense REV__L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 477.2819519042969 3 477.281995 1428.82415 0.10808 5.1585E-05 0.034079 1.6265E-05 0.14216 6.785E-05 477.616321818162 45.284 0.18656 48.8 48.681 48.867 3.5162 22 14 2 0 0 0 0.67356 1 8714 8714 1.1098 0.65524 1 182470 + 14904 25788 9599 9605 18202 18202 0.12689578064964735 ITPKYKRQIPW 11 Unmodified _ITPKYKRQIPW_ 0 0 0 REV__L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|31|3|sense REV__L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 477.2820739746094 3 477.281995 1428.82415 0.13624 6.5027E-05 0.18532 8.8452E-05 0.32157 0.00015348 477.28192834355457 45.381 0.28025 49.018 48.913 49.193 3.6369 30 19 2 0 0 0 0.6724 1 8682 8682 1.2148 0.80657 1 114360 + 14905 25788 9599 9605 18203 18203 0.12689578064964735 ITPLLPIGG 9 Unmodified _ITPLLPIGG_ 0 0 0 REV__ENST00000441719.5_1_2:86706336-86706414:+|nuORF REV__ENST00000441719.5_1_2:86706336-86706414:+|nuORF MSMS UPN48_class_I_Rep_2 6 440.7991638183594 2 440.778754 879.542954 NaN NaN NaN NaN NaN NaN NaN 69.007 1 72.529 72.029 73.029 3.5216 0 0 0 0.39326 1 15955 15955 2.3027 0 1 + 14906 22333 9600 9606 18204 18204 0.09836447425288952 ITPPLKNVRK 10 Unmodified _ITPPLKNVRK_ 0 0 0 nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L nc|ENSG00000102387|Q5H9L4-3|TAF7L nc|ENSG00000102387|Q5H9L4-3|TAF7L MSMS UPN47_class_I_Rep_1 2 583.377685546875 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 41.144 1 44.816 44.316 45.316 3.6719 0 0 0 0.53105 1 8230 8230 1.3295 0.63916 1 14907 1613 9601 9607 18205 18205 0.1584994845638903 ITPWDPYEV 9 Unmodified _ITPWDPYEV_ 0 0 0 Tigger2b_Pri_dup195|chr1:243428435-243429480:+|1.1721108775029017|0.054527740878493|4.43|151.0|6|1|sense;Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|4|1|sense Tigger2b_Pri_dup195|chr1:243428435-243429480:+|1.1721108775029017|0.054527740878493|4.43|151.0|6|1|sense Tigger2b_Pri_dup195|chr1:243428435-243429480:+|1.1721108775029017|0.054527740878493|4.43|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 560.2702026367188 2 560.27149 1118.52843 NaN NaN NaN NaN NaN NaN NaN 78.318 1 81.599 81.099 82.099 3.2816 0 0 0 0.36505 1 19526 19526 7.2892 0 1 14908 33342 9602 9608 18206 18206 -0.02609669513526569 ITPYLYNGWL 10 Unmodified _ITPYLYNGWL_ 0 0 0 REV__HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|68|3|sense REV__HAL1_dup9051|chr6:87207660-87209423:-|1.2991756070536462|0.0387062215863142|5.07|151.0|68|3|sense MSMS UPN48_class_I_Rep_2 6 620.3265991210938 2 620.324057 1238.63356 NaN NaN NaN NaN NaN NaN NaN 54.894 1 58.45 57.95 58.95 3.5559 0 0 0 0.53105 1 11647 11647 3.2813 1.2216 1 + 14909 23444 9603 9609 18207 18207 0.023788716829130863 ITQEIHHF 8 Unmodified _ITQEIHHF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_3 7 512.7764892578125 2 512.764166 1023.51378 0.35662 0.00018286 0.15852 8.1286E-05 0.51514 0.00026415 513.2657466722541 75.965 0.18442 79.548 79.417 79.602 3.5831 25 20 2 0 0 0 0.82752 1 17873 17873 12.532 4.6214 1 43101 14910 5298 9604 9610 18208 18208 0.0029630312900508216 ITQEIHHF 8 Unmodified _ITQEIHHF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN48_class_I_Rep_3 7 512.77587890625 2 512.764166 1023.51378 NaN NaN NaN NaN NaN NaN NaN 76.123 1 79.706 79.206 80.206 3.5831 0 0 0 0.388 1 17919 17919 12.532 3.9383 1 14911 5298 9604 9610 18209 18209 0.0029630312900508216 ITQGTPLKY 9 Unmodified _ITQGTPLKY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS UPN47_class_I_Rep_1 2 511.29132080078125 2 510.78985 1019.56515 -0.18482 -9.4403E-05 0.088299 4.5102E-05 -0.096519 -4.9301E-05 510.78992191019717 36.039 0.79678 39.715 39.476 40.273 3.6762 107 57 3 0 0 0 0.15547 4 6677 6634;6677;6717;6760 24.991 8.0487 1 168000 14912 5311 9605 9611 18210;18211;18212;18213 18211 0.056146271030456774 ITQGTPLKY 9 Unmodified _ITQGTPLKY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7900085449219 2 510.78985 1019.56515 -0.26756 -0.00013667 0.22353 0.00011418 -0.044026 -2.2488E-05 510.7899098858691 36.378 0.90626 39.79 39.456 40.363 3.4114 122 67 2 0 0 0 0.066364 4 6798 6756;6798;6838;6883 41.956 19.219 1 140340 14913 5311 9605 9611 18214;18215;18216;18217 18215 0.056146271030456774 ITQGTPLKY 9 Unmodified _ITQGTPLKY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS UPN47_class_I_Rep_3 4 510.7896728515625 2 510.78985 1019.56515 -0.2638 -0.00013475 0.25433 0.00012991 -0.0094706 -4.8375E-06 510.78990482765005 36.57 0.71106 39.817 39.48 40.191 3.247 86 46 2 0 0 0 0.14216 4 6883 6841;6883;6932;6978 26.268 12.362 1 125610 14914 5311 9605 9611 18218;18219;18220;18221 18219 0.056146271030456774 ITQILNPVIWL 11 Unmodified _ITQILNPVIWL_ 0 0 0 REV__MER44A_dup1611|chr11:43458703-43459060:+|1.839112880128372|0.021106528110141|6.45|151.0|23|3|anti-sense REV__MER44A_dup1611|chr11:43458703-43459060:+|1.839112880128372|0.021106528110141|6.45|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 437.601806640625 3 437.267463 1308.78056 -0.097418 -4.2598E-05 0.77726 0.00033987 0.67984 0.00029727 437.26752339697225 50.659 1.183 54.288 53.59 54.773 3.6285 99 57 3 0 0 0 0.68178 1 11177 11177 0.36667 0 1 111800 + 14915 31308 9606 9612 18222 18222 0.1385196856786024 ITQSSRQIMH 10 Unmodified _ITQSSRQIMH_ 0 0 0 HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|25|2|sense HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|25|2|sense HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 600.8134155273438 2 600.811322 1199.60809 NaN NaN NaN NaN NaN NaN NaN 74.977 1 78.289 77.789 78.789 3.3127 0 0 0 0.53105 1 18493 18493 1.3295 0.72803 1 14916 7928 9607 9613 18223 18223 0.016270738888351843 ITRKFFAKC 9 Unmodified _ITRKFFAKC_ 0 0 0 REV__ENST00000418437.1_1_13:21834372-21835116:+|nuORF REV__ENST00000418437.1_1_13:21834372-21835116:+|nuORF MSMS UPN48_class_I_Rep_3 7 557.3174438476562 2 557.315512 1112.61647 NaN NaN NaN NaN NaN NaN NaN 73.953 1 77.504 77.004 78.004 3.5505 0 0 0 0.4007 1 17321 17321 0.52476 0.066424 1 + 14917 18684 9608 9614 18224 18224 0.06466672596093304 ITRKFFGK 8 Unmodified _ITRKFFGK_ 0 0 0 REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF MSMS UPN47_class_I_Rep_2 3 498.8040466308594 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 50.343 1 53.686 53.186 54.186 3.3431 0 0 0 0.40625 1 11057 11057 2.3027 0.24298 1 + 14918 19428 9609 9615 18225 18225 0.09366360785043071 ITRQKQLFY 9 Unmodified _ITRQKQLFY_ 0 0 0 nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENSG00000185787|ENST00000426013|MORF4L1 nc|ENSG00000185787|Q9UBU8|MORF4L1 nc|ENSG00000185787|Q9UBU8|MORF4L1 MSMS UPN48_class_I_Rep_3 7 598.8436889648438 2 598.842948 1195.67134 NaN NaN NaN NaN NaN NaN NaN 33.541 1 37.221 36.721 37.721 3.6797 0 0 0 0.32573 1 5227 5227 9.3831 1.473 1 14919 16778 9610 9616 18226 18226 0.08133382668370359 ITRQYYIY 8 Unmodified _ITRQYYIY_ 0 0 0 REV__L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|32|2|sense REV__L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|32|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.7973022460938 2 560.295299 1118.57605 0.43738 0.00024506 0.075112 4.2085E-05 0.51249 0.00028714 560.2949708556147 66.961 1.0669 70.152 69.825 70.892 3.1914 182 78 3 0 0 0 0.82752 1 16313 16313 7.9102 0 1 302470 + 14920 26210 9611 9617 18227 18227 0.02150029477343196 ITRVLGAL 8 Unmodified _ITRVLGAL_ 0 0 0 MER21C_dup1106|chr3:125263567-125264469:+|2.893835384326469|0.0512432347077443|5.82|151.0|49|1|anti-sense;MER21C_dup2719|chr8:94977876-94978433:+|1.2203900739573337|0.0575137907232801|4.41|151.0|29|2|anti-sense;MER21C_dup2485|chr7:140830387-140831282:+|2.3221708741195104|0.0537938720731767|5.43|151.0|71|3|anti-sense MER21C_dup1106|chr3:125263567-125264469:+|2.893835384326469|0.0512432347077443|5.82|151.0|49|1|anti-sense MER21C_dup1106|chr3:125263567-125264469:+|2.893835384326469|0.0512432347077443|5.82|151.0|49|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 421.7765197753906 2 421.776545 841.538538 0.026676 1.1251E-05 -0.18522 -7.8123E-05 -0.15855 -6.6872E-05 421.77644504590444 54.133 0.37353 54.133 53.987 54.361 0 49 38 2 0 0 0 0.82752 1 11707 11707 32.786 0 1 256170 14921 15881 9612 9618 18228 18228 0.1114298300237806 ITSDWKIGSD 10 Unmodified _ITSDWKIGSD_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS UPN47_class_I_Rep_1 2 561.2772216796875 2 561.277303 1120.54005 0.075442 4.2344E-05 -0.084553 -4.7458E-05 -0.0091105 -5.1135E-06 561.2770737051151 44.057 0.69213 47.752 47.371 48.063 3.6951 89 44 3 0 0 0 0.56189 1 9092 9092 2.4985 0.65425 1 247600 + 14922 20869 9613 9619 18229 18229 -0.015394724901625523 ITSFAATWIE 10 Unmodified _ITSFAATWIE_ 0 0 0 L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|21|2|sense L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|21|2|sense L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 569.54052734375 2 569.792589 1137.57063 NaN NaN NaN NaN NaN NaN NaN 31.979 1 35.513 35.013 36.013 3.5342 0 0 0 0.53105 1 4801 4801 1.4819 0.28856 1 14923 9776 9614 9620 18230 18230 0.00734305894843601 ITSIARGRVF 10 Unmodified _ITSIARGRVF_ 0 0 0 REV__MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|1|1|sense REV__MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 560.3359375 2 560.33529 1118.65603 NaN NaN NaN NaN NaN NaN NaN 100.94 1 104.69 104.19 105.19 3.7417 0 0 0 0.53105 1 23962 23962 2.7352 0.43246 1 + 14924 31806 9615 9621 18231 18231 0.10144515871184012 ITSLTEKLA 9 Unmodified _ITSLTEKLA_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN47_class_I_Rep_1 2 488.28948974609375 2 488.289682 974.564812 0.26292 0.00012838 1.5322 0.00074815 1.7951 0.00087653 488.2903436278351 108.11 0.17238 111.74 111.63 111.8 3.6355 21 13 2 0 0 0 0.31407 1 26525 26525 13.042 0.51092 1 941540 + 14925 19287 9616 9622 18232 18232 0.07651207383173642 ITSLTEKLA 9 Unmodified _ITSLTEKLA_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN47_class_I_Rep_2 3 488.2913818359375 2 488.289682 974.564812 0.45632 0.00022282 -1.297 -0.00063329 -0.84063 -0.00041047 488.2882331371832 108.12 0.079422 111.65 111.63 111.71 3.5333 9 7 2 0 0 0 0.36392 1 26191 26191 10.074 0 1 691860 + 14926 19287 9616 9622 18233 18233 0.07651207383173642 ITSLTEKLA 9 Unmodified _ITSLTEKLA_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 488.289682 974.564812 0.26292 0.00012838 1.5322 0.00074815 1.7951 0.00087653 488.2903436278351 108.11 0.17238 111.74 111.63 111.8 3.6355 0.052827 0.00018266 NaN 13.042 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 941540 + 14927 19287 9616 9622 0.07651207383173642 ITSLTEKLA 9 Unmodified _ITSLTEKLA_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 488.289682 974.564812 0.45632 0.00022282 -1.297 -0.00063329 -0.84063 -0.00041047 488.2882331371832 108.12 0.079422 111.65 111.63 111.71 3.5333 -0.04076 -0.0025802 NaN 13.042 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 691860 + 14928 19287 9616 9622 0.07651207383173642 ITSLTEKLA 9 Unmodified _ITSLTEKLA_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 488.289682 974.564812 0.14518 7.0891E-05 0.73841 0.00036056 0.88359 0.00043145 488.2898377523731 108.1 0.16924 111.73 111.62 111.79 3.6313 0.04181 -0.00059253 NaN 13.042 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1390900 + 14929 19287 9616 9622 0.07651207383173642 ITSLTEKLA 9 Unmodified _ITSLTEKLA_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 488.289682 974.564812 0.23697 0.00011571 1.0486 0.00051201 1.2856 0.00062772 488.2900846849798 108.08 0.20334 111.76 111.67 111.87 3.6813 0.074135 -0.00028962 NaN 13.042 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1085900 + 14930 19287 9616 9622 0.07651207383173642 ITSNYEVIR 9 Unmodified _ITSNYEVIR_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS UPN47_class_I_Rep_2 3 547.796142578125 2 547.795663 1093.57677 0.49584 0.00027162 -0.13171 -7.2151E-05 0.36413 0.00019947 547.7953531491103 55.683 0.74262 58.993 58.731 59.474 3.3102 58 43 2 0 0 0 0.37599 3 12651 12651;12677;12721 9.3831 0 1 119760 14931 5157 9617 9623 18234;18235;18236 18234 0.03372824126358864 ITSPVHVSF 9 Unmodified _ITSPVHVSF_ 0 0 0 nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;ENSG00000131196|ENST00000427363|NFATC1 nc|ENSG00000131196|O95644-11|NFATC1 nc|ENSG00000131196|O95644-11|NFATC1 MULTI-MSMS UPN48_class_I_Rep_3 7 493.7690124511719 2 493.768917 985.523281 0.099632 4.9195E-05 0.30934 0.00015274 0.40897 0.00020194 493.76891487436905 54.109 0.51737 57.678 57.45 57.967 3.5694 49 31 2 0 0 0 0.18929 1 11334 11334 21.747 1.293 1 102190 14932 16683 9618 9624 18237 18237 0.029940714145254788 ITSQRPASLY 10 Unmodified _ITSQRPASLY_ 0 0 0 MLT1A0_dup17546|chr15:55266042-55266397:+|1.5642520600730356|0.0072384253391373|7.76|151.0|25|3|anti-sense MLT1A0_dup17546|chr15:55266042-55266397:+|1.5642520600730356|0.0072384253391373|7.76|151.0|25|3|anti-sense MLT1A0_dup17546|chr15:55266042-55266397:+|1.5642520600730356|0.0072384253391373|7.76|151.0|25|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.3092041015625 2 568.308938 1134.60332 0.45866 0.00026066 -0.088619 -5.0363E-05 0.37004 0.0002103 568.3088348630247 50.438 0.63786 54.132 53.777 54.414 3.6946 70 39 2 0 0 0 0.55148 1 10341 10341 5.2969 5.2969 1 210560 14933 16251 9619 9625 18238 18238 0.04140513017705416 ITSREIQTAV 10 Unmodified _ITSREIQTAV_ 0 0 0 ENSG00000180596|ENST00000396984|H2BC4;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17 ENSG00000180596|ENST00000396984|H2BC4 ENSG00000180596|ENST00000396984|H2BC4 MULTI-MSMS UPN46_class_I_Rep_3 1 559.3150024414062 2 559.31422 1116.61389 0.42219 0.00023614 -0.2806 -0.00015695 0.14159 7.9194E-05 559.31429757746 41.504 0.17192 41.504 41.39 41.562 0 25 15 2 0 0 0 0.35313 1 8143 8143 23.801 10.928 1 275340 14934 4894 9620 9626 18239 18239 0.06024495672136254 ITSTRSLNY 9 Unmodified _ITSTRSLNY_ 0 0 0 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN48_class_I_Rep_1 5 527.7799682617188 2 527.780013 1053.54547 0.36853 0.0001945 -1.1207 -0.00059148 -0.75217 -0.00039698 527.7799410524282 31.947 0.32209 35.481 35.308 35.63 3.5342 48 30 2 0 0 0 0.38714 2 4765 4765;4797 8.7454 0.97858 1 76596 14935 1770 9621 9627 18240;18241 18240 0.02084251092287559 ITSTRSLNY 9 Unmodified _ITSTRSLNY_ 0 0 0 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN48_class_I_Rep_2 6 527.7794799804688 2 527.780013 1053.54547 0.40841 0.00021555 -2.0188 -0.0010655 -1.6104 -0.00084994 527.7798372106781 31.858 0.34694 35.499 35.339 35.686 3.641 58 33 2 0 0 0 0.43982 2 4840 4840;4867 5.7319 0.69251 1 78639 14936 1770 9621 9627 18242;18243 18242 0.02084251092287559 ITSTRSLNY 9 Unmodified _ITSTRSLNY_ 0 0 0 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN48_class_I_Rep_3 7 527.7802734375 2 527.780013 1053.54547 0.36698 0.00019368 -2.4015 -0.0012675 -2.0346 -0.0010738 527.7797704766313 31.832 0.50879 35.533 35.22 35.728 3.7015 95 57 2 0 0 0 0.20317 2 4734 4734;4745 20.415 4.5674 1 93504 14937 1770 9621 9627 18244;18245 18244 0.02084251092287559 ITTIHLQEFF 10 Unmodified _ITTIHLQEFF_ 0 0 0 L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|17|1|anti-sense L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|17|1|anti-sense L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|17|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 625.336181640625 2 624.834788 1247.65502 0.49419 0.00030879 -0.80804 -0.00050489 -0.31385 -0.0001961 624.8343379755626 107.17 0.15433 110.85 110.74 110.9 3.6783 33 20 2 0 0 0 0.56078 1 25326 25326 3.2813 0.28607 1 181640 14938 10458 9622 9628 18246 18246 0.04110256711624061 ITTSIRCKK 9 Unmodified _ITTSIRCKK_ 0 0 0 REV__L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|42|1|sense REV__L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|42|1|sense MSMS UPN48_class_I_Rep_3 7 525.308837890625 2 525.310426 1048.6063 NaN NaN NaN NaN NaN NaN NaN 47.932 1 51.566 51.066 52.066 3.6339 0 0 0 0.39518 1 9459 9459 1.8442 0 1 + 14939 29803 9623 9629 18247 18247 0.08394064870890361 ITTTINPRF 9 Unmodified _ITTTINPRF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7;ENST00000551319.5_1_12:53585342-53585652:-|nuORF ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MSMS UPN48_class_I_Rep_1 5 531.8004150390625 2 531.800749 1061.58694 NaN NaN NaN NaN NaN NaN NaN 47.325 1 50.847 50.347 51.347 3.5219 0 0 0 0.25702 1 9340 9340 13.042 2.9685 1 14940 3147 9624 9630 18248 18248 0.058614318515992636 ITTTINPRF 9 Unmodified _ITTTINPRF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7;ENST00000551319.5_1_12:53585342-53585652:-|nuORF ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MSMS UPN48_class_I_Rep_1 5 531.8007202148438 2 531.800749 1061.58694 NaN NaN NaN NaN NaN NaN NaN 47.713 1 51.235 50.735 51.735 3.5219 0 0 0 0.11827 1 9459 9459 21.537 3.402 1 14941 3147 9624 9630 18249 18249 0.058614318515992636 ITTTINPRF 9 Unmodified _ITTTINPRF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7;ENST00000551319.5_1_12:53585342-53585652:-|nuORF ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MULTI-MSMS UPN48_class_I_Rep_2 6 531.8015747070312 2 531.800749 1061.58694 0.33108 0.00017607 0.31912 0.00016971 0.6502 0.00034578 531.800907853502 47.293 0.68198 51.03 50.701 51.383 3.7376 108 63 2 0 0 0 0.074399 3 9311 9278;9311;9344 39.95 15.929 1 225440 14942 3147 9624 9630 18250;18251;18252 18251 0.058614318515992636 ITTTINPRF 9 Unmodified _ITTTINPRF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7;ENST00000551319.5_1_12:53585342-53585652:-|nuORF ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MULTI-MSMS UPN48_class_I_Rep_3 7 531.8007202148438 2 531.800749 1061.58694 0.43143 0.00022944 0.21954 0.00011675 0.65097 0.00034619 531.8008100637551 47.455 0.65249 51.091 50.866 51.519 3.6363 88 56 2 0 0 0 0.019142 3 9312 9268;9312;9349 63.961 34.879 1 247180 14943 3147 9624 9630 18253;18254;18255 18254 0.058614318515992636 ITTTINPRF 9 Unmodified _ITTTINPRF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7;ENST00000551319.5_1_12:53585342-53585652:-|nuORF ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MULTI-MATCH UPN48_class_I_Rep_1 5 2 531.800749 1061.58694 0.31548 0.00016777 0.33083 0.00017594 0.64631 0.00034371 531.8008247229485 47.857 0.13392 51.379 51.334 51.468 3.5219 0.21246 5.7704E-05 NaN 63.961 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 82269 14944 3147 9624 9630 0.058614318515992636 ITVLQLSAL 9 Unmodified _ITVLQLSAL_ 0 0 0 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 479.30218505859375 2 479.302593 956.590633 0.28227 0.00013529 -0.52116 -0.0002498 -0.23889 -0.0001145 479.3021617383243 52.822 0.25824 56.432 56.33 56.589 3.6098 20 14 2 0 0 0 0.2924 1 11027 11027 14.405 0 1 103800 14945 2567 9625 9631 18256 18256 0.1106010162544635 ITVLQLSAL 9 Unmodified _ITVLQLSAL_ 0 0 0 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 479.3031921386719 2 479.302593 956.590633 0.081205 3.8922E-05 -0.54968 -0.00026346 -0.46848 -0.00022454 479.3019927230367 52.943 0.36852 56.527 56.34 56.708 3.5836 26 20 2 0 0 0 0.36258 1 11008 11008 10.151 0 1 93535 14946 2567 9625 9631 18257 18257 0.1106010162544635 ITVPAVSRR 9 Unmodified _ITVPAVSRR_ 0 0 0 nc|ENSG00000105549|Q9P2T0-2|SPMAP2;ENSG00000105549|ENST00000342640|THEG nc|ENSG00000105549|Q9P2T0-2|SPMAP2 nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MULTI-MSMS UPN48_class_I_Rep_2 6 499.80877685546875 2 499.808908 997.603263 0.28946 0.00014467 -0.60976 -0.00030476 -0.3203 -0.00016009 499.8088226854382 107.61 0.11225 111.28 111.23 111.34 3.6783 21 14 2 0 0 0 0.41259 1 25434 25434 7.2892 2.96 1 2328000 14947 1743 9626 9632 18258 18258 0.10436557808372982 ITVPAVSRR 9 Unmodified _ITVPAVSRR_ 0 0 0 nc|ENSG00000105549|Q9P2T0-2|SPMAP2;ENSG00000105549|ENST00000342640|THEG nc|ENSG00000105549|Q9P2T0-2|SPMAP2 nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 499.808908 997.603263 0.29882 0.00014935 -0.023647 -1.1819E-05 0.27518 0.00013754 499.8088470160766 107.62 0.12493 111.29 111.24 111.36 3.6724 0.041163 0.00011538 NaN 7.2892 24 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1651800 14948 1743 9626 9632 0.10436557808372982 ITVPAVSRR 9 Unmodified _ITVPAVSRR_ 0 0 0 nc|ENSG00000105549|Q9P2T0-2|SPMAP2;ENSG00000105549|ENST00000342640|THEG nc|ENSG00000105549|Q9P2T0-2|SPMAP2 nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 499.808908 997.603263 0.41356 0.0002067 -3.2671 -0.0016329 -2.8535 -0.0014262 499.80839323728964 107.6 0.065681 111.14 111.08 111.15 3.5345 -0.10963 -0.0031268 NaN 7.2892 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1053600 14949 1743 9626 9632 0.10436557808372982 ITVYLQNIF 9 Unmodified _ITVYLQNIF_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|36|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|36|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|36|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 556.31103515625 2 555.813325 1109.6121 0.42974 0.00023885 -1.6391 -0.00091106 -1.2094 -0.00067221 555.8133294117415 64.782 0.51475 68.29 67.966 68.481 3.5083 56 43 2 0 0 0 0.11884 1 14525 14525 9.3831 0 1 141480 14950 10517 9627 9633 18259 18259 0.06167486654157983 ITWEIHLKK 9 Unmodified _ITWEIHLKK_ 0 0 0 L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|12|1|sense L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|12|1|sense L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3480224609375 2 584.347866 1166.68118 0.18007 0.00010522 0.37238 0.0002176 0.55245 0.00032282 584.3478691561705 26.135 0.097965 26.135 26.114 26.212 0 12 4 5 0 0 0 0.49026 1 3705 3705 1.6526 0.17072 1 547740 14951 15200 9628 9634 18260 18260 0.10450570673742732 ITWFQFHSY 9 Unmodified _ITWFQFHSY_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;ENSG00000042062.13,RIPOR3,chr20,-,I20.1,50590013,50592343|55|7.11|1|intron;ENSG00000042062.13,RIPOR3,chr20,-,I20.1,50590013,50592343|55|7.11|2|intron nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-SECPEP UPN48_class_I_Rep_3 7 409.9033508300781 3 410.197708 1227.57129 -0.006144 -2.5203E-06 2.3345 0.00095761 2.3284 0.00095509 410.1987252282715 29.992 0.02906 33.72 33.708 33.737 3.7286 4 2 2 0 0 0 0.1229 1 4277 4277 2.4985 0.75621 1 13855 14952 870 9629 9635 18261 18261 -0.03338854665435065 ITWYIPKGL 9 Unmodified _ITWYIPKGL_ 0 0 0 L1PA6_dup2435|chr6:75682406-75688529:-|8.3081442460004|0.2963414194894635|4.81|151.0|170|3|sense;L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|22|1|sense L1PA6_dup2435|chr6:75682406-75688529:-|8.3081442460004|0.2963414194894635|4.81|151.0|170|3|sense L1PA6_dup2435|chr6:75682406-75688529:-|8.3081442460004|0.2963414194894635|4.81|151.0|170|3|sense MSMS UPN48_class_I_Rep_3 7 545.819091796875 2 545.81841 1089.62227 NaN NaN NaN NaN NaN NaN NaN 78.616 1 82.238 81.738 82.738 3.6216 0 0 0 0.4007 1 18613 18613 0.52476 0 1 14953 14583 9630 9636 18262 18262 0.08104094379427806 ITYFCHWTPS 10 Unmodified _ITYFCHWTPS_ 0 0 0 REV__MER11D_dup235|chr19:36736030-36736895:+|1.4403719904702588|0.2794033157287395|2.37|151.0|52|3|anti-sense REV__MER11D_dup235|chr19:36736030-36736895:+|1.4403719904702588|0.2794033157287395|2.37|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_1 2 627.786376953125 2 627.784241 1253.55393 NaN NaN NaN NaN NaN NaN NaN 51.236 1 54.829 54.329 55.329 3.5932 0 0 0 0.53105 1 11304 11304 3.5965 0.60125 1 + 14954 31113 9631 9637 18263 18263 -0.06270518262749647 ITYFQWLN 8 Unmodified _ITYFQWLN_ 0 0 0 REV__L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|67|3|sense REV__L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|67|3|sense MSMS UPN47_class_I_Rep_2 3 542.7174682617188 2 542.776742 1083.53893 NaN NaN NaN NaN NaN NaN NaN 71.507 1 74.797 74.297 75.297 3.2899 0 0 0 0.4044 1 17480 17480 4.756 0.42677 1 + 14955 27463 9632 9638 18264 18264 0.0005035793155911961 ITYIEVKY 8 Unmodified _ITYIEVKY_ 0 0 0 L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|27|2|sense L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|27|2|sense L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 514.7860717773438 2 514.786776 1027.559 NaN NaN NaN NaN NaN NaN NaN 47.197 1 47.197 46.697 47.697 0 0 0 0 0.40604 1 9742 9742 2.5775 0 1 14956 12588 9633 9639 18265 18265 0.04632108871510354 ITYPQGLAL 9 Unmodified _ITYPQGLAL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MULTI-MSMS UPN48_class_I_Rep_1 5 488.27899169921875 2 488.279118 974.543683 0.19484 9.5137E-05 -0.023115 -1.1287E-05 0.17173 8.385E-05 488.2789451427335 69.209 0.71324 72.663 72.364 73.077 3.4548 88 52 3 0 0 0 0.021334 2 16033 16033;16076 62.573 26.446 1 278170 14957 2588 9634 9640 18266;18267 18266 0.05539242074314643 ITYPQGLAL 9 Unmodified _ITYPQGLAL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MULTI-MSMS UPN48_class_I_Rep_2 6 488.27911376953125 2 488.279118 974.543683 0.25961 0.00012676 -0.27643 -0.00013497 -0.016818 -8.2118E-06 488.2788648695199 69.029 0.59109 72.551 72.263 72.854 3.5216 79 42 3 0 0 0 0.31407 1 16029 16029 13.042 2.9685 1 185380 14958 2588 9634 9640 18268 18268 0.05539242074314643 ITYPQGLAL 9 Unmodified _ITYPQGLAL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MULTI-MSMS UPN48_class_I_Rep_3 7 488.2789001464844 2 488.279118 974.543683 0.29862 0.00014581 -0.13326 -6.5068E-05 0.16536 8.0741E-05 488.27889776600466 69.011 0.67577 72.521 72.199 72.875 3.5093 97 48 3 0 0 0 0.10568 3 15865 15797;15865;15951 32.786 12.332 1 222440 14959 2588 9634 9640 18269;18270;18271 18270 0.05539242074314643 ITYYRIFKVAR 11 Unmodified _ITYYRIFKVAR_ 0 0 0 nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2 nc|ENSG00000113749|P25021|HRH2 nc|ENSG00000113749|P25021|HRH2 MULTI-MSMS UPN48_class_I_Rep_3 7 477.2820739746094 3 477.281995 1428.82415 0.13603 6.4923E-05 0.042055 2.0072E-05 0.17808 8.4995E-05 477.61625861106313 45.184 0.35619 48.821 48.592 48.948 3.6372 33 23 2 0 0 0 0.6724 1 8616 8616 1.2148 0.10508 1 193880 14960 2057 9635 9641 18272 18272 0.12689578064964735 IVAARGPLW 9 Unmodified _IVAARGPLW_ 0 0 0 REV__L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|35|2|sense REV__L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|35|2|sense MSMS UPN46_class_I_Rep_3 1 491.7961120605469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.531 1 60.531 60.031 61.031 0 0 0 0 0.38478 1 13430 13430 4.3292 1.7518 1 + 14961 30265 9636 9642 18273 18273 0.08446074267999393 IVADHVASY 9 Unmodified _IVADHVASY_ 0 0 0 ENSG00000237541|ENST00000374940|HLA-DQA2;nc|ENSG00000237541|P01909|HLA-DQA1 ENSG00000237541|ENST00000374940|HLA-DQA2 ENSG00000237541|ENST00000374940|HLA-DQA2 MULTI-MSMS UPN46_class_I_Rep_3 1 487.750732421875 2 487.750724 973.486896 0.21212 0.00010346 0.27643 0.00013483 0.48856 0.00023829 487.7507382421345 38.33 0.72385 38.33 38.036 38.76 0 100 75 2 0 0 0 0.035561 3 7274 7233;7274;7305 54.774 16.8 1 231450 14962 5692 9637 9643 18274;18275;18276 18275 -0.0009080548219344564 IVALILSTK 9 Unmodified _IVALILSTK_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS UPN48_class_I_Rep_2 6 479.82257080078125 2 479.320786 956.627018 0.35101 0.00016825 -0.41157 -0.00019727 -0.060562 -2.9029E-05 479.32049962696226 54.989 0.32835 58.544 58.414 58.742 3.5559 28 17 2 0 0 0 0.1249 1 11707 11707 29.082 9.8246 1 91925 14963 5124 9638 9644 18277 18277 0.14696978522181325 IVALILSTK 9 Unmodified _IVALILSTK_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS UPN48_class_I_Rep_2 6 479.3093566894531 2 479.320786 956.627018 0.3576 0.00017141 -0.65555 -0.00031422 -0.29795 -0.00014281 479.3203817242252 55.244 0.08424 58.8 58.742 58.826 3.5559 6 4 2 0 0 0 0.37599 1 11752 11752 9.3831 2.66 1 59345 14964 5124 9638 9644 18278 18278 0.14696978522181325 IVALILSTK 9 Unmodified _IVALILSTK_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MSMS UPN48_class_I_Rep_3 7 479.32073974609375 2 479.320786 956.627018 NaN NaN NaN NaN NaN NaN NaN 55.026 1 58.596 58.096 59.096 3.5694 0 0 0 0.18866 1 11626 11626 17.113 3.2068 1 14965 5124 9638 9644 18279 18279 0.14696978522181325 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.387451171875 2 626.389199 1250.76385 0.55599 0.00034826 -2.7518 -0.0017237 -2.1958 -0.0013754 626.3873544340969 103.34 0.034096 107.12 107.09 107.12 3.7788 6 4 2 0 0 0 0.67113 1 25406 25406 1.3295 0 1 336210 14966 12762 9639 9645 18280 18280 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3863525390625 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.59 1 108.35 107.85 108.85 3.7627 0 0 0 0.38417 1 25685 25685 5.2969 0.39987 1 14967 12762 9639 9645 18281 18281 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3887939453125 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.69 1 109.43 108.93 109.93 3.7395 0 0 0 0.38417 1 25931 25931 5.2969 0 1 14968 12762 9639 9645 18282 18282 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3895874023438 2 626.389199 1250.76385 0.63452 0.00039746 -1.4781 -0.00092588 -0.84359 -0.00052842 626.3884508712663 103.74 0.42326 107.27 107.19 107.61 3.5289 102 66 2 0 0 0 0.59712 3 25206 25206;25241;25268 5.2969 2.0156 1 75588000 14969 12762 9639 9645 18283;18284;18285 18283 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3895263671875 2 626.389199 1250.76385 0.6346 0.0003975 -0.56152 -0.00035173 0.073073 4.5772E-05 626.8898603033304 104.13 0.077347 107.66 107.64 107.71 3.5289 18 11 2 0 0 0 0.59712 1 25300 25300 5.2969 0 1 27748000 14970 12762 9639 9645 18286 18286 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_2 3 626.3887939453125 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.29 1 107.81 107.31 108.31 3.5289 0 0 0 0.38417 1 25331 25331 5.2969 0 1 14971 12762 9639 9645 18287 18287 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_2 3 626.38671875 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.32 1 107.85 107.35 108.35 3.5289 0 0 0 0.38417 1 25338 25338 5.2969 0 1 14972 12762 9639 9645 18288 18288 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_2 3 626.3919677734375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.63 1 108.16 107.66 108.66 3.5289 0 0 0 0.35398 1 25402 25402 8.7454 3.0136 1 14973 12762 9639 9645 18289 18289 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_2 3 626.38818359375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 106.17 1 109.7 109.2 110.2 3.5345 0 0 0 0.38417 1 25726 25726 1.3295 0 1 14974 12762 9639 9645 18290 18290 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.3867797851562 2 626.389199 1250.76385 0.51239 0.00032096 -1.7344 -0.0010864 -1.222 -0.00076543 626.3882247531333 106.11 0.25341 109.65 109.62 109.87 3.5367 46 36 2 0 0 0 0.67113 2 25988 25988;25995 1.3295 0 1 291910 14975 12762 9639 9645 18291;18292 18291 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_3 4 626.3889770507812 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.67 1 108.19 107.69 108.69 3.5205 0 0 0 0.35398 1 25649 25649 8.7454 3.0136 1 14976 12762 9639 9645 18293 18293 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_3 4 626.38623046875 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.85 1 109.39 108.89 109.89 3.5367 0 0 0 0.38417 1 25901 25901 5.2969 0 1 14977 12762 9639 9645 18294 18294 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_3 4 626.3915405273438 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.96 1 109.49 108.99 109.99 3.5367 0 0 0 0.38417 1 25921 25921 5.2969 0 1 14978 12762 9639 9645 18295 18295 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN47_class_I_Rep_3 4 626.3862915039062 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.98 1 109.51 109.01 110.01 3.5367 0 0 0 0.38417 1 25926 25926 1.3295 0 1 14979 12762 9639 9645 18296 18296 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3867797851562 2 626.389199 1250.76385 0.42783 0.00026799 -1.8596 -0.0011648 -1.4317 -0.00089682 626.3883974310388 103.5 0.31724 107.12 106.84 107.16 3.6209 85 45 2 0 0 0 0.59712 1 24901 24901 5.2969 0 1 51252000 14980 12762 9639 9645 18297 18297 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.392578125 2 626.389199 1250.76385 0.42783 0.00026799 -1.2869 -0.00080613 -0.85912 -0.00053814 626.3887012251098 105.79 0.14785 109.42 109.32 109.47 3.6277 32 19 2 0 0 0 0.65559 1 25492 25492 2.7352 1.2533 1 229780 14981 12762 9639 9645 18298 18298 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3870849609375 2 626.389199 1250.76385 0.42788 0.00026802 -1.1401 -0.00071412 -0.71218 -0.0004461 626.8897028125243 105.91 0.13482 109.53 109.47 109.61 3.6277 21 15 2 0 0 0 0.67113 1 25509 25509 1.3295 0 1 230860 14982 12762 9639 9645 18299 18299 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3949584960938 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.67 1 107.29 106.79 107.79 3.6209 0 0 0 0.38417 1 24994 24994 5.2969 0 1 14983 12762 9639 9645 18300 18300 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3861083984375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.7 1 107.32 106.82 107.82 3.6209 0 0 0 0.38417 1 25000 25000 5.2969 0 1 14984 12762 9639 9645 18301 18301 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3924560546875 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.15 1 107.77 107.27 108.27 3.6209 0 0 0 0.38417 1 25096 25096 5.2969 0 1 14985 12762 9639 9645 18302 18302 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3877563476562 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.17 1 107.79 107.29 108.29 3.6209 0 0 0 0.38417 1 25101 25101 5.2969 0 1 14986 12762 9639 9645 18303 18303 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.8889770507812 2 626.389199 1250.76385 0.49473 0.0003099 -1.3952 -0.00087393 -0.90046 -0.00056404 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.4608 2 24412 24412;24469 8.7454 3.4485 1 107270000 14987 12762 9639 9645 18304;18305 18304 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.89013671875 2 626.389199 1250.76385 0.49479 0.00030993 -0.89497 -0.0005606 -0.40018 -0.00025067 626.8894759475826 105.58 0.19415 109.27 109.21 109.4 3.6901 42 26 2 0 0 0 0.65559 1 24991 24991 2.7352 0.23671 1 383670 14988 12762 9639 9645 18306 18306 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_2 6 626.3875122070312 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.09 1 106.8 106.3 107.3 3.7108 0 0 0 0.38417 1 24407 24407 5.2969 0 1 14989 12762 9639 9645 18307 18307 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3883666992188 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.13 1 106.88 106.38 107.38 3.7434 0 0 0 0.38417 1 24363 24363 5.2969 0 1 14990 12762 9639 9645 18308 18308 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.38623046875 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.15 1 106.89 106.39 107.39 3.7434 0 0 0 0.38417 1 24368 24368 5.2969 0 1 14991 12762 9639 9645 18309 18309 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3909912109375 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.62 1 107.37 106.87 107.87 3.7434 0 0 0 0.38417 1 24473 24473 5.2969 2.0156 1 14992 12762 9639 9645 18310 18310 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3883056640625 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.63 1 107.38 106.88 107.88 3.7434 0 0 0 0.38417 1 24476 24476 5.2969 0 1 14993 12762 9639 9645 18311 18311 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3889770507812 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.06 1 107.78 107.28 108.28 3.7192 0 0 0 0.38417 1 24569 24569 5.2969 0 1 14994 12762 9639 9645 18312 18312 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3878784179688 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.21 1 107.93 107.43 108.43 3.7192 0 0 0 0.38417 1 24600 24600 5.2969 0 1 14995 12762 9639 9645 18313 18313 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3873901367188 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.56 1 109.26 108.76 109.76 3.702 0 0 0 0.38417 1 24910 24910 5.2969 0 1 14996 12762 9639 9645 18314 18314 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3912353515625 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.65 1 109.35 108.85 109.85 3.702 0 0 0 0.38417 1 24930 24930 2.7352 1.2533 1 14997 12762 9639 9645 18315 18315 0.1484946768187001 IVALSLTFLKF 11 Unmodified _IVALSLTFLKF_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|144|1|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3883056640625 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.8 1 109.5 109 110 3.702 0 0 0 0.38417 1 24965 24965 1.3295 0 1 14998 12762 9639 9645 18316 18316 0.1484946768187001 IVATFFIVASK 11 Unmodified _IVATFFIVASK_ 0 0 0 REV__ENST00000379066.5_1_2:37543718-37543916:-|nuORF REV__ENST00000379066.5_1_2:37543718-37543916:-|nuORF MSMS UPN48_class_I_Rep_3 7 598.3577270507812 2 598.357899 1194.70125 NaN NaN NaN NaN NaN NaN NaN 84.693 1 88.442 87.942 88.942 3.7494 0 0 0 0.38417 1 20099 20099 2.7352 0 1 + 14999 22037 9640 9646 18317 18317 0.11168321613695298 IVATIPVRFLP 11 Unmodified _IVATIPVRFLP_ 0 0 0 REV__nc|ENSG00000134900|P29144|TPP2 REV__nc|ENSG00000134900|P29144|TPP2 MSMS UPN47_class_I_Rep_1 2 613.3873901367188 2 613.386991 1224.75943 NaN NaN NaN NaN NaN NaN NaN 75.656 1 79.059 78.559 79.559 3.4034 0 0 0 0.38417 1 18686 18686 1.3295 0 1 + 15000 19119 9641 9647 18318 18318 0.1560400325899991 IVAVLPVGL 9 Unmodified _IVAVLPVGL_ 0 0 0 L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|29|2|sense L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|29|2|sense L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|29|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7991027832031 2 440.796946 879.57934 0.099789 4.3987E-05 3.7262 0.0016425 3.826 0.0016865 440.7992850442991 65.244 0.12611 65.244 65.146 65.272 0 21 13 2 0 0 0 0.48414 1 14739 14739 2.3027 0 1 130350 15001 8506 9642 9648 18319 18319 0.1347332432201256 IVAVLPVGL 9 Unmodified _IVAVLPVGL_ 0 0 0 L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|29|2|sense L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|29|2|sense L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|29|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7995300292969 2 440.796946 879.57934 0.13141 5.7923E-05 3.2731 0.0014428 3.4045 0.0015007 440.7993789773842 75.703 0.45361 75.703 75.473 75.927 0 72 46 2 0 0 0 0.48414 1 17649 17649 2.3027 0 1 142300 15002 8506 9642 9648 18320 18320 0.1347332432201256 IVCPCLTL 8 2 Carbamidomethyl (C) _IVC(Carbamidomethyl (C))PC(Carbamidomethyl (C))LTL_ IVC(1)PC(1)LTL IVC(53)PC(53)LTL 0 2 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.25360107421875 2 488.253731 974.492909 0.15991 7.8078E-05 -0.23406 -0.00011428 -0.074148 -3.6203E-05 488.25351987748974 77.117 0.71098 80.532 80.149 80.86 3.4149 123 63 3 0 0 0 0.82752 2 19061 19061;19096 70.865 16.649 1 507960 + 15003 32520 9643 9649 18321;18322 18321 0.004642534334720949 IVCPCLTL 8 2 Carbamidomethyl (C) _IVC(Carbamidomethyl (C))PC(Carbamidomethyl (C))LTL_ IVC(1)PC(1)LTL IVC(53)PC(53)LTL 0 2 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.2535705566406 2 488.253731 974.492909 0.2959 0.00014448 -0.4403 -0.00021498 -0.14439 -7.0501E-05 488.2534377443209 77.209 0.74721 80.54 80.252 80.999 3.3315 133 75 2 0 0 0 0.82752 2 19144 19144;19182 52.693 8.2861 1 439120 + 15004 32520 9643 9649 18323;18324 18323 0.004642534334720949 IVCPCLTL 8 2 Carbamidomethyl (C) _IVC(Carbamidomethyl (C))PC(Carbamidomethyl (C))LTL_ IVC(1)PC(1)LTL IVC(60)PC(60)LTL 0 2 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 488.2354431152344 2 488.253731 974.492909 0.2959 0.00014448 -0.4403 -0.00021498 -0.14439 -7.0501E-05 488.2534377443209 77.209 0.74721 80.54 80.252 80.999 3.3315 133 75 2 0 0 0 0.72333 1 19090 19090 59.795 21.821 1 439120 + 15005 32520 9643 9649 18325 18325 0.004642534334720949 IVCPCLTL 8 2 Carbamidomethyl (C) _IVC(Carbamidomethyl (C))PC(Carbamidomethyl (C))LTL_ IVC(1)PC(1)LTL IVC(43)PC(43)LTL 0 2 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.2535095214844 2 488.253731 974.492909 0.19348 9.4467E-05 -0.22487 -0.0001098 -0.031394 -1.5328E-05 488.25353197220267 77.241 0.76621 80.51 80.215 80.981 3.269 168 83 3 0 0 0 0.82752 1 19200 19200 42.968 14.481 1 316730 + 15006 32520 9643 9649 18326 18326 0.004642534334720949 IVCPEEEEEE 10 Unmodified _IVCPEEEEEE_ 0 0 0 REV__ENSG00000198919|ENST00000361582|DZIP3 REV__ENSG00000198919|ENST00000361582|DZIP3 MSMS UPN47_class_I_Rep_3 4 603.2465209960938 2 603.247551 1204.48055 NaN NaN NaN NaN NaN NaN NaN 31.449 1 34.748 34.248 35.248 3.2991 0 0 0 0.53105 1 5360 5360 1.6526 0.17072 1 + 15007 21164 9644 9650 18327 18327 -0.11351156286514197 IVDEAIYYF 9 Unmodified _IVDEAIYYF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN47_class_I_Rep_1 2 566.7819213867188 2 566.78169 1131.54883 0.39709 0.00022506 0.061981 3.513E-05 0.45907 0.00026019 566.7815998714826 77.918 1.176 81.347 80.938 82.114 3.4289 333 115 4 0 0 0 0.013968 6 19335 19300;19335;19370;19410;19445;19484 67.344 37.119 1 1144400 15008 1963 9645 9651 18328;18329;18330;18331;18332;18333 18329 -0.011684988537354002 IVDEAIYYF 9 Unmodified _IVDEAIYYF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN47_class_I_Rep_2 3 566.7818603515625 2 566.78169 1131.54883 0.48378 0.0002742 -0.02258 -1.2798E-05 0.4612 0.0002614 566.7815486929599 78.082 1.1942 81.425 81.048 82.242 3.3428 365 129 4 0 0 0 0.013968 7 19406 19344;19377;19406;19439;19470;19504;19583 67.344 44.195 1 1091600 15009 1963 9645 9651 18334;18335;18336;18337;18338;18339;18340 18336 -0.011684988537354002 IVDEAIYYF 9 Unmodified _IVDEAIYYF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN47_class_I_Rep_3 4 566.7819213867188 2 566.78169 1131.54883 0.46529 0.00026372 -0.021655 -1.2274E-05 0.44364 0.00025144 566.7815649687917 78.134 1.2188 81.415 81.056 82.275 3.2816 378 128 4 0 0 0 0.029391 7 19472 19404;19437;19472;19508;19546;19584;19638 57.471 34.323 1 1123100 15010 1963 9645 9651 18341;18342;18343;18344;18345;18346;18347 18343 -0.011684988537354002 IVDEPARPV 9 Unmodified _IVDEPARPV_ 0 0 0 REV__ENSG00000127804|ENST00000263092|METTL16 REV__ENSG00000127804|ENST00000263092|METTL16 MULTI-MSMS UPN48_class_I_Rep_3 7 498.27899169921875 2 498.279649 994.544745 0.16116 8.0301E-05 -0.12756 -6.356E-05 0.033598 1.6741E-05 498.27952097583307 35.377 0.61085 39.049 38.774 39.384 3.6721 131 63 3 0 0 0 0.42249 1 5672 5672 6.7232 0 1 164330 + 15011 18884 9646 9652 18348 18348 0.04725456443236453 IVDISHLVFV 10 Unmodified _IVDISHLVFV_ 0 0 0 REV__L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|187|1|anti-sense REV__L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|187|1|anti-sense MSMS UPN46_class_I_Rep_3 1 571.7823486328125 2 571.334424 1140.6543 NaN NaN NaN NaN NaN NaN NaN 65.132 1 65.132 64.632 65.632 0 0 0 0 0.53105 1 14707 14707 1.6526 1.0511 1 + 15012 25266 9647 9653 18349 18349 0.08959462062557577 IVDKTASFV 9 Unmodified _IVDKTASFV_ 0 0 0 ENST00000496189.1_1_22:30748938-30752805:-|nuORF;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 ENST00000496189.1_1_22:30748938-30752805:-|nuORF ENST00000496189.1_1_22:30748938-30752805:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.2765197753906 2 490.276575 978.538597 -0.11164 -5.4732E-05 0.43303 0.0002123 0.32139 0.00015757 490.27655590934893 39.598 0.59252 42.977 42.713 43.306 3.3785 68 38 2 0 0 0 0.35081 1 7817 7817 10.824 0 1 91351 15013 1460 9648 9654 18350 18350 0.04846938211721863 IVDKTASFV 9 Unmodified _IVDKTASFV_ 0 0 0 ENST00000496189.1_1_22:30748938-30752805:-|nuORF;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1 ENST00000496189.1_1_22:30748938-30752805:-|nuORF ENST00000496189.1_1_22:30748938-30752805:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.2772216796875 2 490.276575 978.538597 -0.28681 -0.00014062 0.26283 0.00012886 -0.023976 -1.1755E-05 490.2765639665919 39.809 0.65037 43.046 42.735 43.385 3.2372 63 45 2 0 0 0 0.24936 1 7861 7861 17.113 2.2746 1 99574 15014 1460 9648 9654 18351 18351 0.04846938211721863 IVDQSQQAY 9 Unmodified _IVDQSQQAY_ 0 0 0 ENSG00000164924.18,YWHAZ,chr8,-,I11.1,100925040,100932028|28|35.44|1|intron;ENSG00000164924.18,YWHAZ,chr8,-,I11.1,100925040,100932028|28|35.44|3|intron;ENST00000392459.3_1_6:127676988-127677414:+|nuORF;ENSG00000164924.18,YWHAZ,chr8,-,I11.1,100925040,100932028|28|35.44|2|intron;ENSG00000164924.18,YWHAZ,chr8,-,I11.1,100925040,100932028|28|35.44|4|intron;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000164924.18,YWHAZ,chr8,-,I7.1,100948901,100950405|34|32.31|3|intron;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000164924.18,YWHAZ,chr8,-,I7.1,100948901,100950405|34|32.31|2|intron ENSG00000164924.18,YWHAZ,chr8,-,I11.1,100925040,100932028|28|35.44|1|intron ENSG00000164924.18,YWHAZ,chr8,-,I11.1,100925040,100932028|28|35.44|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 526.2553100585938 2 526.256371 1050.49819 -0.28035 -0.00014753 -0.011019 -5.7986E-06 -0.29137 -0.00015333 526.2562213255297 31.547 0.52051 35.016 34.762 35.282 3.4691 47 40 2 0 0 0 0.24936 2 5312 5312;5367 17.113 4.0704 1 66320 15015 4141 9649 9655 18352;18353 18352 -0.025040281787141794 IVDRGSTNL 9 Unmodified _IVDRGSTNL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_1 2 487.7668151855469 2 487.766906 973.519259 -0.31519 -0.00015374 0.54511 0.00026589 0.22993 0.00011215 487.76702613361545 26.949 0.72759 30.715 30.513 31.241 3.7662 135 56 3 0 0 0 0.20317 3 3974 3938;3974;4018 20.415 15.248 1 212750 15016 1297 9650 9656 18354;18355;18356 18355 0.03143981920800343 IVDRGSTNL 9 Unmodified _IVDRGSTNL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_2 3 487.766845703125 2 487.766906 973.519259 -0.13703 -6.6836E-05 0.39 0.00019023 0.25297 0.00012339 487.766969181561 27.133 0.70806 30.631 30.385 31.093 3.4986 129 59 3 0 0 0 0.053261 3 4031 3989;4031;4104 47.594 9.4432 1 222320 15017 1297 9650 9656 18357;18358;18359 18358 0.03143981920800343 IVDRGSTNL 9 Unmodified _IVDRGSTNL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 487.766906 973.519259 -0.50125 -0.00024449 0.86099 0.00041996 0.35975 0.00017547 487.76718986918684 27.334 0.82069 30.676 30.33 31.151 3.3422 0.0018747 0.0002298 NaN 47.594 145 70 3 NaN NaN NaN NaN 0 NaN NaN 0 221720 15018 1297 9650 9656 0.03143981920800343 IVEKIEMLS 9 Unmodified _IVEKIEMLS_ 0 0 0 REV__L1MB7_dup18238|chr15:64525186-64525783:-|2.2306545194651948|0.0180158195585268|6.95|151.0|16|3|sense REV__L1MB7_dup18238|chr15:64525186-64525783:-|2.2306545194651948|0.0180158195585268|6.95|151.0|16|3|sense MSMS UPN47_class_I_Rep_1 2 531.31591796875 2 531.299193 1060.58383 NaN NaN NaN NaN NaN NaN NaN 60.449 1 63.83 63.33 64.33 3.3815 0 0 0 0.32573 1 14108 14108 9.3831 0 1 + 15019 26178 9651 9657 18360 18360 0.05596420682581993 IVEKIGVHLI 10 Unmodified _IVEKIGVHLI_ 0 0 0 POLR3C|p.D186Afs*10|1|0.05|ENSG00000186141|chr1:145826973-145826973|A/-|frameshift_variant;ENSG00000186141|ENST00000334163|POLR3C POLR3C|p.D186Afs*10|1|0.05|ENSG00000186141|chr1:145826973-145826973|A/-|frameshift_variant POLR3C|p.D186Afs*10|1|0.05|ENSG00000186141|chr1:145826973-145826973|A/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 560.8583984375 2 560.858067 1119.70158 NaN NaN NaN NaN NaN NaN NaN 56.67 1 60.172 59.672 60.672 3.5014 0 0 0 0.53105 1 12214 12214 1.4819 0 1 15020 5144 9652 9658 18361 18361 0.1465174133356868 IVEKKKSLK 9 Unmodified _IVEKKKSLK_ 0 0 0 L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 536.840087890625 2 536.858067 1071.70158 0.58067 0.00031174 1.571 0.00084343 2.1517 0.0011552 536.858704946458 55.538 0.46812 59.094 58.724 59.193 3.5559 61 26 3 0 0 0 0.17897 1 11838 11838 22.736 0.98964 1 445920 15021 12347 9653 9659 18362 18362 0.16859741333541933 IVEKKKSLK 9 Unmodified _IVEKKKSLK_ 0 0 0 L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 536.858067 1071.70158 0.58067 0.00031174 1.571 0.00084343 2.1517 0.0011552 536.858704946458 55.538 0.46812 59.094 58.724 59.193 3.5559 -0.026434 0.00010124 NaN 22.736 61 26 3 NaN NaN NaN NaN 0 NaN NaN 0 445920 15022 12347 9653 9659 0.16859741333541933 IVEKKKSLK 9 Unmodified _IVEKKKSLK_ 0 0 0 L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 536.858067 1071.70158 0.44525 0.00023903 1.3831 0.00074253 1.8284 0.00098157 536.8586010435521 55.524 0.53964 59.079 58.694 59.233 3.5554 -0.041318 -0.00010055 NaN 22.736 81 29 3 NaN NaN NaN NaN 0 NaN NaN 0 560010 15023 12347 9653 9659 0.16859741333541933 IVEMIILSKLM 11 Unmodified _IVEMIILSKLM_ 0 0 0 L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|66|2|sense L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|66|2|sense L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 645.3816528320312 2 645.382203 1288.74985 NaN NaN NaN NaN NaN NaN NaN 107.28 1 110.91 110.41 111.41 3.6299 0 0 0 0.32232 1 25851 25851 10.8 0 1 15024 9857 9654 9660 18363 18363 0.11702730866932143 IVFFFNSVY 9 Unmodified _IVFFFNSVY_ 0 0 0 L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|127|1|anti-sense L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|127|1|anti-sense L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|127|1|anti-sense MSMS UPN47_class_I_Rep_3 4 568.2957153320312 2 568.294768 1134.57498 NaN NaN NaN NaN NaN NaN NaN 67.611 1 70.803 70.303 71.303 3.1914 0 0 0 0.38299 1 16380 16380 4.756 1.1595 1 15025 15235 9655 9661 18364 18364 0.013078151084300771 IVFHLPYHPN 10 Unmodified _IVFHLPYHPN_ 0 0 0 L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|47|3|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|47|3|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|47|3|sense MSMS UPN48_class_I_Rep_2 6 618.7140502929688 2 618.82984 1235.64513 NaN NaN NaN NaN NaN NaN NaN 45.629 1 49.387 48.887 49.887 3.7579 0 0 0 0.53105 1 8829 8829 1.6526 0.17072 1 15026 12536 9656 9662 18365 18365 0.03673113496915903 IVFHRLLRLC 10 Unmodified _IVFHRLLRLC_ 0 0 0 L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|49|3|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|49|3|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|49|3|anti-sense MSMS UPN46_class_I_Rep_3 1 635.3856811523438 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 99.005 1 99.005 98.505 99.505 0 0 0 0 0.53105 1 24109 24109 0.40072 0 1 15027 10327 9657 9663 18366 18366 0.1303400119552407 IVFHRLLRLC 10 Unmodified _IVFHRLLRLC_ 0 0 0 L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|49|3|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|49|3|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 635.3853759765625 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 82.888 1 86.286 85.786 86.786 3.3984 0 0 0 0.53105 1 20659 20659 0.40072 0 1 15028 10327 9657 9663 18367 18367 0.1303400119552407 IVFHYMDIP 9 Unmodified _IVFHYMDIP_ 0 0 0 L1ME4b_dup390|chr1:51450635-51450912:+|1.2528378574574897|0.0333423691287988|5.23|151.0|9|1|anti-sense;L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|112|3|anti-sense L1ME4b_dup390|chr1:51450635-51450912:+|1.2528378574574897|0.0333423691287988|5.23|151.0|9|1|anti-sense L1ME4b_dup390|chr1:51450635-51450912:+|1.2528378574574897|0.0333423691287988|5.23|151.0|9|1|anti-sense MSMS UPN47_class_I_Rep_2 3 567.7953491210938 2 567.786253 1133.55795 NaN NaN NaN NaN NaN NaN NaN 66.856 1 70.12 69.62 70.62 3.2636 0 0 0 0.1724 1 16088 16088 18.135 1.0484 1 15029 11729 9658 9664 18368 18368 -0.0034842876902985154 IVFMCPHSF 9 Unmodified _IVFMCPHSF_ 0 0 0 REV__HAL1_dup9814|chr7:5318311-5319115:+|3.5991566561464485|0.3526781981646887|3.35|151.0|34|1|anti-sense REV__HAL1_dup9814|chr7:5318311-5319115:+|3.5991566561464485|0.3526781981646887|3.35|151.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.7533569335938 2 540.753898 1079.49324 0.19185 0.00010374 -1.51 -0.00081653 -1.3181 -0.00071279 540.7531153379073 44.798 0.57308 48.042 47.763 48.336 3.2441 43 36 2 0 0 0 0.23311 1 9435 9435 18.135 5.0925 1 78445 + 15030 23447 9659 9665 18369 18369 -0.0433232684667928 IVFSTSALA 9 Unmodified _IVFSTSALA_ 0 0 0 L1PA16_dup5319|chr6:72633385-72634059:+|1.7610708115595226|0.0054427035574065|8.34|150.0|19|3|sense L1PA16_dup5319|chr6:72633385-72634059:+|1.7610708115595226|0.0054427035574065|8.34|150.0|19|3|sense L1PA16_dup5319|chr6:72633385-72634059:+|1.7610708115595226|0.0054427035574065|8.34|150.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 454.7566833496094 2 454.758018 907.501483 NaN NaN NaN NaN NaN NaN NaN 105.69 1 109.43 108.93 109.93 3.7395 0 0 0 0.38299 1 25929 25929 4.756 1.8668 1 15031 14095 9660 9666 18370 18370 0.04403266665929095 IVFYKRKH 8 Unmodified _IVFYKRKH_ 0 0 0 L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|16|1|sense L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|16|1|sense L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|16|1|sense MSMS UPN47_class_I_Rep_3 4 545.8284912109375 2 545.829643 1089.64473 NaN NaN NaN NaN NaN NaN NaN 55.516 1 58.694 58.194 59.194 3.1779 0 0 0 0.40738 1 12693 12693 0.79363 0 1 15032 13306 9661 9667 18371 18371 0.10349738567697386 IVFYTKSFT 9 Unmodified _IVFYTKSFT_ 0 0 0 REV__L1MEc_dup6858|chr6:37947919-37948486:-|1.3316650932505545|0.0037613474227518|8.47|150.0|8|1|sense REV__L1MEc_dup6858|chr6:37947919-37948486:-|1.3316650932505545|0.0037613474227518|8.47|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.3006591796875 2 553.30005 1104.58555 0.50565 0.00027978 0.11371 6.2917E-05 0.61937 0.0003427 553.3000006328749 88.694 0.18355 92.317 92.208 92.391 3.6229 52 23 3 0 0 0 0.26948 1 21267 21267 15.847 0 1 169040 + 15033 28475 9662 9668 18372 18372 0.037437977628542285 IVGDTVILL 9 Unmodified _IVGDTVILL_ 0 0 0 REV__ENST00000552259.5_1_12:39040880-39073423:-|nuORF REV__ENST00000552259.5_1_12:39040880-39073423:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 89.055 1 92.448 91.948 92.948 3.3931 0 0 0 0.1724 1 22332 22332 18.135 0 1 + 15034 19303 9663 9669 18373 18373 0.10660699251184269 IVGVRRVGHN 10 Unmodified _IVGVRRVGHN_ 0 0 0 REV__MLT1C_dup6732|chr6:24958714-24958952:-|1.10374481299515|0.0023968028177805|8.85|150.0|11|1|anti-sense REV__MLT1C_dup6732|chr6:24958714-24958952:-|1.10374481299515|0.0023968028177805|8.85|150.0|11|1|anti-sense MSMS UPN46_class_I_Rep_3 1 553.8289184570312 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 84.18 1 84.18 83.68 84.68 0 0 0 0 0.53105 1 20017 20017 1.4819 0.79152 1 + 15035 31652 9664 9670 18374 18374 0.09826167305527633 IVGYDQLLH 9 Unmodified _IVGYDQLLH_ 0 0 0 AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|11|3|sense AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|11|3|sense AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|11|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 529.2694091796875 2 529.287474 1056.5604 0.3544 0.00018758 1.0297 0.00054498 1.3841 0.00073256 529.2876962773458 61.654 0.5986 65.022 64.737 65.336 3.3681 81 43 3 0 0 0 0.11425 1 14498 14498 12.532 0.89125 1 137060 15036 196 9665 9671 18375 18375 0.034377429602727716 IVGYLVTCEM 10 Unmodified _IVGYLVTCEM_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS UPN47_class_I_Rep_3 4 564.3591918945312 2 564.277403 1126.54025 NaN NaN NaN NaN NaN NaN NaN 113.19 1 116.7 116.2 117.2 3.5098 0 0 0 0.53105 1 27759 27759 1.6526 0 1 15037 2757 9666 9672 18376 18376 -0.01795512086209783 IVHDSIYIT 9 Unmodified _IVHDSIYIT_ 0 0 0 L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|81|3|sense L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|81|3|sense L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|81|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.787353515625 2 530.787307 1059.56006 0.27927 0.00014823 0.4169 0.00022128 0.69617 0.00036952 530.7872035217471 77.437 0.29946 80.768 80.536 80.835 3.3315 43 29 2 0 0 0 0.33654 1 19196 19196 11.64 11.64 1 72993 15038 12050 9667 9673 18377 18377 0.03266323240427482 IVIHNRFY 8 Unmodified _IVIHNRFY_ 0 0 0 REV__L1MC5_dup9466|chr10:69138443-69139294:-|1.1469809858633802|0.0309801654851118|5.21|151.0|35|1|anti-sense REV__L1MC5_dup9466|chr10:69138443-69139294:-|1.1469809858633802|0.0309801654851118|5.21|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 531.3157348632812 2 531.298176 1060.5818 NaN NaN NaN NaN NaN NaN NaN 59.523 1 62.921 62.421 63.421 3.3982 0 0 0 0.38221 1 13828 13828 14.582 0 1 + 15039 27100 9668 9674 18378 18378 0.05393172779668021 IVIHNRFY 8 Unmodified _IVIHNRFY_ 0 0 0 REV__L1MC5_dup9466|chr10:69138443-69139294:-|1.1469809858633802|0.0309801654851118|5.21|151.0|35|1|anti-sense REV__L1MC5_dup9466|chr10:69138443-69139294:-|1.1469809858633802|0.0309801654851118|5.21|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_3 4 531.316162109375 2 531.298176 1060.5818 NaN NaN NaN NaN NaN NaN NaN 59.922 1 63.087 62.587 63.587 3.1651 0 0 0 0.39624 1 14034 14034 9.3474 0 1 + 15040 27100 9668 9674 18379 18379 0.05393172779668021 IVITILVLH 9 Unmodified _IVITILVLH_ 0 0 0 REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_1 5 510.8450927734375 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.71 1 75.176 74.676 75.676 3.466 0 0 0 0.26661 1 16784 16784 12.532 0 1 + 15041 27326 9669 9675 18380 18380 0.16525257793159653 IVITILVLH 9 Unmodified _IVITILVLH_ 0 0 0 REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.32373046875 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.357 1 74.908 74.408 75.408 3.5505 0 0 0 0.38299 1 16644 16644 4.756 0 1 + 15042 27326 9669 9675 18381 18381 0.16525257793159653 IVITILVLH 9 Unmodified _IVITILVLH_ 0 0 0 REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_3 7 511.32342529296875 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.424 1 74.95 74.45 75.45 3.5266 0 0 0 0.24828 1 16585 16585 13.508 0 1 + 15043 27326 9669 9675 18382 18382 0.16525257793159653 IVITILVLH 9 Unmodified _IVITILVLH_ 0 0 0 REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense REV__L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_3 7 510.8438720703125 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.469 1 74.996 74.496 75.496 3.5266 0 0 0 0.26661 1 16599 16599 12.532 0 1 + 15044 27326 9669 9675 18383 18383 0.16525257793159653 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 520.3531494140625 2 520.352951 1038.69135 0.32738 0.00017035 0.51559 0.00026829 0.84297 0.00043864 520.3529794514199 108.78 0.89362 108.78 108.52 109.41 0 104 75 2 0 0 0 0.46434 1 26759 26759 4.3292 0 1 6107900 15045 16580 9670 9676 18384 18384 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 520.3531494140625 2 520.352951 1038.69135 0.41107 0.0002139 0.13393 6.9689E-05 0.54499 0.00028359 520.3528760218846 108.27 0.83051 111.9 111.5 112.33 3.6355 206 79 4 0 0 0 0.48643 4 26501 26501;26540;26583;26632 2.0598 0 1 12163000 15046 16580 9670 9676 18385;18386;18387;18388 18385 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 520.35302734375 2 520.352951 1038.69135 0.37581 0.00019555 0.37188 0.00019351 0.74769 0.00038906 520.3529896669197 108.19 0.46506 111.73 111.4 111.86 3.5382 133 50 4 0 0 0 0.48643 4 26372 26372;26411;26449;26495 2.0598 0 1 27860000 15047 16580 9670 9676 18389;18390;18391;18392 18389 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 520.353271484375 2 520.352951 1038.69135 0.27004 0.00014052 0.2045 0.00010641 0.47454 0.00024693 520.3529139965059 108.14 0.3243 111.77 111.51 111.84 3.6313 67 28 3 0 0 0 0.48643 2 26108 26108;26153 2.0598 0 1 8098000 15048 16580 9670 9676 18393;18394 18393 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 520.3529663085938 2 520.352951 1038.69135 0.27068 0.00014085 0.15903 8.2754E-05 0.42971 0.0002236 520.3530098789254 108.24 0.39685 111.87 111.74 112.14 3.6313 63 32 5 0 0 0 0.48643 1 26201 26201 2.0598 0 1 8404300 15049 16580 9670 9676 18395 18395 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 520.3532104492188 2 520.352951 1038.69135 0.3686 0.0001918 0.28704 0.00014936 0.65563 0.00034116 520.3529388441947 108.03 0.11688 111.7 111.59 111.71 3.6746 32 10 4 0 0 0 0.48643 1 25578 25578 2.0598 0 1 14253000 15050 16580 9670 9676 18396 18396 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 520.35302734375 2 520.352951 1038.69135 0.36864 0.00019182 0.28957 0.00015068 0.6582 0.0003425 520.3529377212966 108.28 0.50111 111.95 111.72 112.22 3.6746 184 58 4 0 0 0 0.48643 3 25615 25615;25662;25712 2.0598 0 1 30191000 15051 16580 9670 9676 18397;18398;18399 18397 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 520.3533325195312 2 520.352951 1038.69135 0.39045 0.00020317 0.35495 0.0001847 0.7454 0.00038787 520.3529488517715 107.96 0.21353 111.64 111.44 111.66 3.6813 50 21 3 0 0 0 0.48643 1 25489 25489 2.0598 0 1 8634900 15052 16580 9670 9676 18400 18400 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 520.3532104492188 2 520.352951 1038.69135 0.39115 0.00020353 0.36083 0.00018776 0.75198 0.00039129 520.3529887430533 108.22 0.60649 111.9 111.67 112.27 3.6813 176 63 4 0 0 0 0.48643 2 25571 25571;25667 2.0598 0 1 32838000 15053 16580 9670 9676 18401;18402 18401 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 520.352951 1038.69135 0.41043 0.00021357 -0.10979 -5.7128E-05 0.30064 0.00015644 520.352830361915 107.92 0.14217 111.56 111.48 111.63 3.6355 -0.10392 -0.00048618 NaN 2.0598 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1902600 15054 16580 9670 9676 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 520.352951 1038.69135 0.24037 0.00012508 0.44431 0.0002312 0.68468 0.00035627 520.3529960268195 108.29 0.99022 111.82 111.36 112.35 3.5333 0.15546 9.0465E-05 NaN 2.0598 258 106 4 NaN NaN NaN NaN 0 NaN NaN 0 17724000 15055 16580 9670 9676 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 520.352951 1038.69135 0.37528 0.00019528 0.15371 7.9986E-05 0.52899 0.00027526 520.3527814299047 107.85 0.059013 111.39 111.36 111.42 3.5382 -0.27579 -0.00021196 NaN 2.0598 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1143000 15056 16580 9670 9676 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 520.352951 1038.69135 0.3686 0.0001918 0.28704 0.00014936 0.65563 0.00034116 520.3529388441947 108.03 0.11688 111.7 111.59 111.71 3.6746 0.037315 -7.3207E-05 NaN 2.0598 32 10 4 NaN NaN NaN NaN 0 NaN NaN 0 14253000 15057 16580 9670 9676 0.1735517839899785 IVKKRLVSP 9 Unmodified _IVKKRLVSP_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|13|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 520.352951 1038.69135 0.39045 0.00020317 0.35495 0.0001847 0.7454 0.00038787 520.3529488517715 107.96 0.21353 111.64 111.44 111.66 3.6813 -0.023855 -2.5238E-06 NaN 2.0598 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 8634900 15058 16580 9670 9676 0.1735517839899785 IVKQPNLT 8 Unmodified _IVKQPNLT_ 0 0 0 REV__L1ME1_dup29915|chr20:48778602-48780008:+|1.7107066545275451|0.0157057526794509|6.77|151.0|31|2|sense REV__L1ME1_dup29915|chr20:48778602-48780008:+|1.7107066545275451|0.0157057526794509|6.77|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.7798767089844 2 456.779285 911.544017 -0.32521 -0.00014855 0.33402 0.00015257 0.0088166 4.0272E-06 456.7794836897992 40.901 0.46423 44.573 44.399 44.863 3.6719 49 41 2 0 0 0 0.82752 1 8150 8150 21.747 0.20967 1 56156 + 15059 27755 9671 9677 18403 18403 0.08470661794160605 IVLFKPFQVF 10 Unmodified _IVLFKPFQVF_ 0 0 0 REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|122|2|anti-sense REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|122|2|anti-sense MSMS UPN46_class_I_Rep_3 1 619.3715209960938 2 619.37081 1236.72707 NaN NaN NaN NaN NaN NaN NaN 96.579 1 96.579 96.079 97.079 0 0 0 0 0.53105 1 23487 23487 1.4819 0 1 + 15060 24252 9672 9678 18404 18404 0.11817215855967333 IVLFKPFQVF 10 Unmodified _IVLFKPFQVF_ 0 0 0 REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|122|2|anti-sense REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|122|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 619.3715209960938 2 619.37081 1236.72707 0.6544 0.00040532 0.64733 0.00040094 1.3017 0.00080626 619.3710332989132 96.601 0.13025 96.601 96.518 96.649 0 32 15 3 0 0 0 0.84575 1 23487 23487 1.4819 0 1 210000 + 15061 24252 9672 9678 18405 18405 0.11817215855967333 IVLFKPFQVF 10 Unmodified _IVLFKPFQVF_ 0 0 0 REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|122|2|anti-sense REV__L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|122|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.3713989257812 2 619.37081 1236.72707 0.58995 0.0003654 0.84662 0.00052437 1.4366 0.00088977 619.3711005884627 92.586 0.34172 96.464 96.248 96.589 3.8782 83 47 2 0 0 0 0.56333 1 21911 21911 1.4819 0.95714 1 223790 + 15062 24252 9672 9678 18406 18406 0.11817215855967333 IVLLSCQTPL 10 Unmodified _IVLLSCQTPL_ 0 0 0 REV__MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|108|3|anti-sense REV__MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|108|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 543.83203125 2 543.81501 1085.61547 0.42273 0.00022989 -3.1868 -0.001733 -2.764 -0.0015031 543.8130399012518 66.793 0.21654 69.978 69.782 69.999 3.1853 21 15 2 0 0 0 0.84575 1 16076 16076 1.4819 0.15237 1 82044 + 15063 31542 9673 9679 18407 18407 0.07608413436537376 IVLLVAPLGGA 11 Unmodified _IVLLVAPLGGA_ 0 0 0 REV__ENSG00000168792|ENST00000307201|ABHD15 REV__ENSG00000168792|ENST00000307201|ABHD15 MSMS UPN48_class_I_Rep_1 5 511.8326721191406 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 29.82 1 33.37 32.87 33.87 3.5499 0 0 0 0.38417 1 4201 4201 0.35063 0.35063 1 + 15064 20283 9674 9680 18408 18408 0.14360667413518513 IVLWARLVVP 10 Unmodified _IVLWARLVVP_ 0 0 0 Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.8790893554688 2 583.376426 1164.7383 -0.0040149 -2.3422E-06 1.3625 0.00079487 1.3585 0.00079253 583.8788276444473 41.583 0.14761 45.263 45.182 45.329 3.6792 12 10 2 0 0 0 0.56309 1 8371 8371 1.6526 1.0511 1 53151 15065 33097 9675 9681 18409 18409 0.16252037950107479 IVLWARLVVP 10 Unmodified _IVLWARLVVP_ 0 0 0 Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 583.376426 1164.7383 0.065024 3.7933E-05 1.2068 0.00070402 1.2718 0.00074195 583.3769707936468 41.92 0.090832 45.283 45.232 45.323 3.3626 0.08983 -2.8211E-05 NaN 1.6526 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 50174 15066 33097 9675 9681 0.16252037950107479 IVLWARLVVP 10 Unmodified _IVLWARLVVP_ 0 0 0 Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 583.376426 1164.7383 0.062786 3.6628E-05 0.77774 0.00045372 0.84053 0.00049034 583.37690926855 41.98 0.069885 45.22 45.177 45.247 3.2394 0.027053 -0.00052881 NaN 1.6526 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 36109 15067 33097 9675 9681 0.16252037950107479 IVLWARLVVP 10 Unmodified _IVLWARLVVP_ 0 0 0 Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 583.376426 1164.7383 0.4262 0.00024863 1.3743 0.00080173 1.8005 0.0010504 583.3770870873349 41.509 0.22296 45.015 44.904 45.127 3.506 -0.17724 0.00016723 NaN 1.6526 41 22 3 NaN NaN NaN NaN 0 NaN NaN 0 893390 15068 33097 9675 9681 0.16252037950107479 IVLWARLVVP 10 Unmodified _IVLWARLVVP_ 0 0 0 Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|76|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 583.376426 1164.7383 0.42035 0.00024522 1.1193 0.00065295 1.5396 0.00089817 583.8786360430502 41.432 0.24283 45.183 45.076 45.319 3.7508 -0.0095182 -0.00013035 NaN 1.6526 46 27 2 NaN NaN NaN NaN 0 NaN NaN 0 144610 15069 33097 9675 9681 0.16252037950107479 IVLWRDTRL 9 Unmodified _IVLWRDTRL_ 0 0 0 REV__nc|ENSG00000134824|O95864-3|FADS2 REV__nc|ENSG00000134824|O95864-3|FADS2 MULTI-MSMS UPN48_class_I_Rep_2 6 586.8543090820312 2 586.35094 1170.68733 0.5167 0.00030297 0.25117 0.00014728 0.76787 0.00045024 586.8527093477431 64.433 0.5422 67.907 67.766 68.308 3.4743 71 39 2 0 0 0 0.37599 3 14542 14542;14609;14648 9.3831 3.2813 1 238660 + 15070 19113 9676 9682 18410;18411;18412 18410 0.10881088905262004 IVLWRDTRL 9 Unmodified _IVLWRDTRL_ 0 0 0 REV__nc|ENSG00000134824|O95864-3|FADS2 REV__nc|ENSG00000134824|O95864-3|FADS2 MULTI-MSMS UPN48_class_I_Rep_3 7 586.853515625 2 586.35094 1170.68733 0.5291 0.00031024 0.40629 0.00023823 0.93539 0.00054846 586.3510962445381 64.331 0.63713 67.839 67.571 68.208 3.5083 82 58 2 0 0 0 0.44742 1 14444 14444 5.2969 1.3525 1 189810 + 15071 19113 9676 9682 18413 18413 0.10881088905262004 IVLYFLCAFF 10 Unmodified _IVLYFLCAFF_ 0 0 0 REV__L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|51|3|anti-sense REV__L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|51|3|anti-sense MSMS UPN48_class_I_Rep_2 6 618.3299560546875 2 618.330296 1234.64604 NaN NaN NaN NaN NaN NaN NaN 45.961 1 49.719 49.219 50.219 3.7579 0 0 0 0.53105 1 8928 8928 1.8442 0 1 + 15072 27608 9677 9683 18414 18414 0.038101918215488695 IVMRTLPL 8 Unmodified _IVMRTLPL_ 0 0 0 REV__nc|ENSG00000293416|E5RG02|PRSS46P REV__nc|ENSG00000293416|E5RG02|PRSS46P MSMS UPN47_class_I_Rep_2 3 471.79522705078125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 48.291 1 51.64 51.14 52.14 3.3492 0 0 0 0.40604 1 10427 10427 2.5775 0 1 + 15073 32137 9678 9684 18415 18415 0.10008482818830089 IVNIAKHMPK 10 Unmodified _IVNIAKHMPK_ 0 0 0 REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|58|3|sense REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|58|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 575.8424072265625 2 575.841894 1149.66923 0.49495 0.00028501 0.459 0.00026431 0.95395 0.00054932 575.8419110641242 86.933 0.28082 86.933 86.754 87.035 0 67 26 3 0 0 0 0.54466 1 20830 20830 6.2058 0.47393 1 656040 + 15074 24462 9679 9685 18416 18416 0.10038630658914371 IVNPFRKVF 9 Unmodified _IVNPFRKVF_ 0 0 0 Tigger1_dup6468|chr8:99132196-99134051:-|3.1827868259217684|0.1437128284476932|4.47|151.0|94|2|anti-sense Tigger1_dup6468|chr8:99132196-99134051:-|3.1827868259217684|0.1437128284476932|4.47|151.0|94|2|anti-sense Tigger1_dup6468|chr8:99132196-99134051:-|3.1827868259217684|0.1437128284476932|4.47|151.0|94|2|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3359985351562 2 560.337301 1118.66005 NaN NaN NaN NaN NaN NaN NaN 100.98 1 104.8 104.3 105.3 3.8153 0 0 0 0.39518 1 23893 23893 1.8442 0.36234 1 15075 33161 9680 9686 18417 18417 0.10546605364879724 IVNSLSWIPFH 11 Unmodified _IVNSLSWIPFH_ 0 0 0 L1ME4b_dup392|chr1:51451030-51451206:+|1.001407595561557|0.0098039974608439|6.67|151.0|11|1|anti-sense L1ME4b_dup392|chr1:51451030-51451206:+|1.001407595561557|0.0098039974608439|6.67|151.0|11|1|anti-sense L1ME4b_dup392|chr1:51451030-51451206:+|1.001407595561557|0.0098039974608439|6.67|151.0|11|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.2397155761719 3 438.239796 1311.69756 0.047867 2.0977E-05 -0.12213 -5.3524E-05 -0.074267 -3.2547E-05 438.2397176418129 66.069 0.89479 69.521 69.115 70.01 3.4516 144 58 3 0 0 0 0.59293 1 14988 14988 5.4027 2.3304 1 639990 15076 12929 9681 9687 18418 18418 0.05417651839843529 IVNVSNVFVV 10 Unmodified _IVNVSNVFVV_ 0 0 0 REV__L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|171|3|anti-sense REV__L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|171|3|anti-sense MSMS UPN48_class_I_Rep_1 5 545.31689453125 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 84.383 1 87.98 87.48 88.48 3.5973 0 0 0 0.53105 1 20199 20199 2.7352 0.23671 1 + 15077 25202 9682 9688 18419 18419 0.08222889028479585 IVPGKFQTH 9 Unmodified _IVPGKFQTH_ 0 0 0 L1MA5_dup27|chr1:36051709-36052687:+|1.7242674880643831|0.0744862357601236|4.53|151.0|61|3|anti-sense L1MA5_dup27|chr1:36051709-36052687:+|1.7242674880643831|0.0744862357601236|4.53|151.0|61|3|anti-sense L1MA5_dup27|chr1:36051709-36052687:+|1.7242674880643831|0.0744862357601236|4.53|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.7883911132812 2 513.790184 1025.56581 -0.2761 -0.00014186 -0.63033 -0.00032386 -0.90643 -0.00046571 513.789792828787 35.044 1.048 38.308 37.973 39.021 3.2639 135 76 2 0 0 0 0.47197 1 6357 6357 3.5965 3.5965 1 150220 15078 9893 9683 9689 18420 18420 0.05405466542742943 IVPKFKKEKV 10 Unmodified _IVPKFKKEKV_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MSMS UPN47_class_I_Rep_3 4 405.93212890625 3 405.932303 1214.77508 NaN NaN NaN NaN NaN NaN NaN 34.249 1 37.523 37.023 38.023 3.2748 0 0 0 0.53105 1 6205 6205 0.69767 0.2894 1 15079 1624 9684 9690 18421 18421 0.17628289776007477 IVPKFKKEKV 10 Unmodified _IVPKFKKEKV_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MSMS UPN48_class_I_Rep_1 5 405.9325866699219 3 405.932303 1214.77508 NaN NaN NaN NaN NaN NaN NaN 33.967 1 37.487 36.987 37.987 3.5201 0 0 0 0.53105 1 5371 5371 0.69767 0.24315 1 15080 1624 9684 9690 18422 18422 0.17628289776007477 IVPLWWWVQS 10 Unmodified _IVPLWWWVQS_ 0 0 0 REV__AluSx1_dup95816|chr17:16050226-16050522:-|1.1292468630800536|0.1340197168159123|3.07|151.0|2|1|sense REV__AluSx1_dup95816|chr17:16050226-16050522:-|1.1292468630800536|0.1340197168159123|3.07|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 438.5741271972656 3 438.572886 1312.69683 NaN NaN NaN NaN NaN NaN NaN 66.179 1 69.536 69.036 70.036 3.3576 0 0 0 0.53105 1 15836 15836 4.1895 0 1 + 15081 17190 9685 9691 18423 18423 0.0529885719079175 IVPPSFIRKL 10 Unmodified _IVPPSFIRKL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN48_class_I_Rep_3 7 585.3748779296875 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 47.382 1 51.018 50.518 51.518 3.6363 0 0 0 0.53105 1 9293 9293 3.9444 0 1 15082 3707 9686 9692 18424 18424 0.15559734087514698 IVPWPMWV 8 Unmodified _IVPWPMWV_ 0 0 0 ENST00000466134.5_1_21:45735979-45739299:+|nuORF ENST00000466134.5_1_21:45735979-45739299:+|nuORF ENST00000466134.5_1_21:45735979-45739299:+|nuORF MSMS UPN47_class_I_Rep_2 3 514.2765502929688 2 514.275324 1026.53609 NaN NaN NaN NaN NaN NaN NaN 33.65 1 37.09 36.59 37.59 3.4398 0 0 0 0.40738 1 5988 5988 0.79363 0 1 15083 6898 9687 9693 18425 18425 0.023888112730674038 IVQARLLAL 9 Unmodified _IVQARLLAL_ 0 0 0 REV__HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|85|1|anti-sense REV__HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|85|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 498.8316955566406 2 498.831852 995.649151 -0.16827 -8.3937E-05 0.20366 0.00010159 0.035393 1.7655E-05 498.8318651982307 40.453 0.96758 43.824 43.314 44.281 3.3712 147 66 3 0 0 0 0.28552 1 7963 7963 14.838 0 1 299970 + 15084 23779 9688 9694 18426 18426 0.1511520299059157 IVQDKVLAL 9 Unmodified _IVQDKVLAL_ 0 0 0 nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2 nc|ENSG00000175662|Q6ZVM7-3|TOM1L2 nc|ENSG00000175662|Q6ZVM7-3|TOM1L2 MULTI-MSMS UPN47_class_I_Rep_2 3 499.8153381347656 2 499.815867 997.617182 0.24678 0.00012335 -0.12968 -6.4815E-05 0.1171 5.853E-05 499.815713961865 61.353 0.54804 64.619 64.269 64.817 3.2654 51 38 2 0 0 0 0.42249 1 14457 14457 6.7232 0.99131 1 179710 15085 4732 9689 9695 18427 18427 0.11827790516781533 IVQFNLRNV 9 Unmodified _IVQFNLRNV_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|212|2|anti-sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|212|2|anti-sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|212|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.243896484375 2 551.822015 1101.62948 -0.067795 -3.7411E-05 -0.14728 -8.1271E-05 -0.21507 -0.00011868 551.8218260043292 38.102 0.77637 41.343 41.069 41.845 3.2414 62 55 2 0 0 0 0.48846 1 7356 7356 1.8442 0 1 64903 15086 9555 9690 9696 18428 18428 0.08272826979828096 IVQQLKEV 8 Unmodified _IVQQLKEV_ 0 0 0 REV__Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|9|1|sense REV__Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 478.79229736328125 2 478.792392 955.570232 NaN NaN NaN NaN NaN NaN NaN 39.704 1 42.942 42.442 43.442 3.238 0 0 0 0.40292 1 7874 7874 6.7232 0 1 + 15087 32514 9691 9697 18429 18429 0.09066930965650499 IVQVNREY 8 Unmodified _IVQVNREY_ 0 0 0 L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|71|3|sense L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|71|3|sense L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|71|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 510.27532958984375 2 510.777274 1019.53999 0.19804 0.00010115 0.17995 9.1914E-05 0.37798 0.00019307 510.77755502253194 67.591 0.13474 70.952 70.906 71.041 3.3611 14 9 2 0 0 0 0.72333 1 16262 16262 2.3027 0 1 40656 15088 12418 9692 9698 18430 18430 0.031005723004682295 IVREEVVKENA 11 Unmodified _IVREEVVKENA_ 0 0 0 nc|ENSG00000164283|Q9NQ30-2|ESM1;ENSG00000164283|ENST00000381405|ESM1 nc|ENSG00000164283|Q9NQ30-2|ESM1 nc|ENSG00000164283|Q9NQ30-2|ESM1 MSMS UPN48_class_I_Rep_3 7 643.32470703125 2 643.359159 1284.70376 NaN NaN NaN NaN NaN NaN NaN 46.831 1 50.467 49.967 50.967 3.6363 0 0 0 0.38417 1 9127 9127 2.2828 0.63015 1 15089 4099 9693 9699 18431 18431 0.07280125280726679 IVRGGSIRL 9 Unmodified _IVRGGSIRL_ 0 0 0 Tigger3a_dup240|chr1:155678039-155678317:+|1.2939145085216694|0.0966174397492268|3.74|150.0|7|3|sense Tigger3a_dup240|chr1:155678039-155678317:+|1.2939145085216694|0.0966174397492268|3.74|150.0|7|3|sense Tigger3a_dup240|chr1:155678039-155678317:+|1.2939145085216694|0.0966174397492268|3.74|150.0|7|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.316162109375 2 485.811451 969.608348 0.17968 8.7288E-05 2.6936 0.0013086 2.8732 0.0013959 485.811701731913 64.886 0.60949 68.141 67.867 68.477 3.2556 78 49 3 0 0 0 0.35081 1 15487 15487 10.824 1.4765 1 597530 15090 33357 9694 9700 18432 18432 0.12232861670975126 IVRLENQYY 9 Unmodified _IVRLENQYY_ 0 0 0 Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.8187255859375 2 599.316763 1196.61897 0.27827 0.00016677 0.074012 4.4357E-05 0.35229 0.00021113 599.3167398975141 50.89 0.99706 54.519 54.051 55.048 3.6285 130 45 4 0 0 0 0.12799 1 11096 11096 28.487 3.0875 1 760060 15091 33150 9695 9701 18433 18433 0.028527995347531032 IVRLENQYY 9 Unmodified _IVRLENQYY_ 0 0 0 Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.3169555664062 2 599.316763 1196.61897 0.48957 0.00029341 -0.12399 -7.4307E-05 0.36558 0.0002191 599.3165582353554 51.086 1.1088 54.425 54.089 55.198 3.3386 147 57 3 0 0 0 0.12799 4 11435 11208;11435;11480;11518 28.487 0 1 751500 15092 33150 9695 9701 18434;18435;18436;18437 18435 0.028527995347531032 IVRLENQYY 9 Unmodified _IVRLENQYY_ 0 0 0 Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense MSMS UPN47_class_I_Rep_2 3 599.3170776367188 2 599.316763 1196.61897 NaN NaN NaN NaN NaN NaN NaN 51.868 1 55.201 54.701 55.701 3.3332 0 0 0 0.11494 1 11526 11526 21.747 0 1 15093 33150 9695 9701 18438 18438 0.028527995347531032 IVRLENQYY 9 Unmodified _IVRLENQYY_ 0 0 0 Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense MSMS UPN47_class_I_Rep_3 4 599.3173828125 2 599.316763 1196.61897 NaN NaN NaN NaN NaN NaN NaN 51.826 1 55.031 54.531 55.531 3.2055 0 0 0 0.2088 1 11566 11566 15.847 0 1 15094 33150 9695 9701 18439 18439 0.028527995347531032 IVRLENQYY 9 Unmodified _IVRLENQYY_ 0 0 0 Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|65|1|anti-sense MSMS UPN47_class_I_Rep_3 4 599.3173828125 2 599.316763 1196.61897 NaN NaN NaN NaN NaN NaN NaN 52.037 1 55.243 54.743 55.743 3.2055 0 0 0 0.35339 1 11631 11631 7.9102 0 1 15095 33150 9695 9701 18440 18440 0.028527995347531032 IVRLQQLL 8 Unmodified _IVRLQQLL_ 0 0 0 ENST00000392396.7_2_3:195796375-195798346:-|nuORF ENST00000392396.7_2_3:195796375-195798346:-|nuORF ENST00000392396.7_2_3:195796375-195798346:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.8240966796875 2 491.824027 981.633501 NaN NaN NaN NaN NaN NaN NaN 65.58 1 68.835 68.335 69.335 3.2556 0 0 0 0.40625 1 15700 15700 2.3027 0 1 15096 6521 9696 9702 18441 18441 0.14194916473547892 IVRSNEQFK 9 Unmodified _IVRSNEQFK_ 0 0 0 REV__ENST00000511359.1_1_5:23303923-23304922:-|nuORF REV__ENST00000511359.1_1_5:23303923-23304922:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 560.8141479492188 2 560.809105 1119.60366 0.46129 0.0002587 2.4052 0.0013489 2.8665 0.0016076 561.3095358563685 51.15 0.16069 54.674 54.582 54.743 3.5246 10 9 2 0 0 0 0.49026 1 10522 10522 1.6526 0 1 54765 + 15097 22740 9697 9703 18442 18442 0.04863932737566756 IVRYLHWIR 9 Unmodified _IVRYLHWIR_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MSMS UPN46_class_I_Rep_3 1 628.3743896484375 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 38.819 1 38.819 38.319 39.319 0 0 0 0 0.4007 1 7419 7419 0.52476 0 1 + 15098 20681 9698 9704 18443 18443 0.11776787896110363 IVSFRSQRHAI 11 Unmodified _IVSFRSQRHAI_ 0 0 0 REV__Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|124|2|anti-sense REV__Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|124|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 438.58538818359375 3 438.586077 1312.7364 -1.0387 -0.00045555 -0.27792 -0.00012189 -1.3166 -0.00057744 438.5859122614919 27.089 0.53561 30.432 30.247 30.782 3.3422 82 46 2 0 0 0 0.64031 1 4093 4093 4.1166 0 1 62515 + 15099 32541 9699 9705 18444 18444 0.09254377194247354 IVSIYILLYCL 11 Unmodified _IVSIYILLYCL_ 0 0 0 L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|159|3|anti-sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|159|3|anti-sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|159|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 438.5920715332031 3 438.257687 1311.75123 -0.71811 -0.00031472 0.29466 0.00012913 -0.42346 -0.00018558 438.2577568710001 25.066 0.63886 28.549 28.143 28.782 3.483 90 55 2 0 0 0 0.60697 2 3377 3377;3448 5.0475 0 1 89016 15100 9599 9700 9706 18445;18446 18445 0.1078268822739119 IVSIYILLYCL 11 Unmodified _IVSIYILLYCL_ 0 0 0 L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|159|3|anti-sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|159|3|anti-sense L1MA3_dup6469|chr11:74211925-74215064:+|2.7921011647344653|0.0811574813049087|5.1|151.0|159|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 438.5920715332031 3 438.257687 1311.75123 -0.71811 -0.00031472 0.29466 0.00012913 -0.42346 -0.00018558 438.2577568710001 25.066 0.63886 28.549 28.143 28.782 3.483 90 55 2 0 0 0 22.551 1 3377 3377 5.0475 0 1 89016 15101 9599 9700 9706 18447 18447 0.1078268822739119 IVSNFQLVG 9 Unmodified _IVSNFQLVG_ 0 0 0 REV__MER21B_dup2593|chr19:57780598-57781045:+|1.423092395785832|0.1591500212316124|3.16|151.0|20|1|anti-sense REV__MER21B_dup2593|chr19:57780598-57781045:+|1.423092395785832|0.1591500212316124|3.16|151.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.77642822265625 2 488.776742 975.538931 0.1847 9.0278E-05 -0.40562 -0.00019826 -0.22092 -0.00010798 488.7765162507918 71.669 0.67667 74.888 74.624 75.3 3.2188 77 54 2 0 0 0 0.30034 1 17560 17560 13.906 0.86358 1 127530 + 15102 31207 9701 9707 18448 18448 0.05018357931567152 IVSNFQLVG 9 Unmodified _IVSNFQLVG_ 0 0 0 REV__MER21B_dup2593|chr19:57780598-57781045:+|1.423092395785832|0.1591500212316124|3.16|151.0|20|1|anti-sense REV__MER21B_dup2593|chr19:57780598-57781045:+|1.423092395785832|0.1591500212316124|3.16|151.0|20|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.7757873535156 2 488.776742 975.538931 0.29374 0.00014357 -0.24649 -0.00012048 0.047257 2.3098E-05 488.77652810071294 71.357 0.65468 74.876 74.601 75.256 3.5185 100 59 2 0 0 0 0.30034 1 16546 16546 13.906 2.2658 1 259860 + 15103 31207 9701 9707 18449 18449 0.05018357931567152 IVSPTYLLFLF 11 Unmodified _IVSPTYLLFLF_ 0 0 0 L1MB4_dup3821|chr8:47469876-47470269:+|1.0374292401802612|0.0102677710136355|6.66|151.0|26|3|anti-sense L1MB4_dup3821|chr8:47469876-47470269:+|1.0374292401802612|0.0102677710136355|6.66|151.0|26|3|anti-sense L1MB4_dup3821|chr8:47469876-47470269:+|1.0374292401802612|0.0102677710136355|6.66|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.2573547363281 3 438.256564 1311.74786 NaN NaN NaN NaN NaN NaN NaN 25.216 1 28.782 28.282 29.282 3.5667 0 0 0 0.3803 1 2902 2902 7.0371 1.6344 1 15104 10516 9702 9708 18450 18450 0.10445761444975687 IVSPVRPTRR 10 Unmodified _IVSPVRPTRR_ 0 0 0 REV__ENSG00000134504|ENST00000580059|KCTD1 REV__ENSG00000134504|ENST00000580059|KCTD1 MULTI-MSMS UPN46_class_I_Rep_3 1 590.8668212890625 2 590.867289 1179.72002 0.55034 0.00032518 -0.80456 -0.00047539 -0.25422 -0.00015021 590.8665428897925 99.093 0.23099 99.093 98.961 99.192 0 56 26 4 0 0 0 0.34027 1 24147 24147 24.991 11.085 1 1555700 + 15105 19101 9703 9709 18451 18451 0.13735296028130506 IVSPVRPTRR 10 Unmodified _IVSPVRPTRR_ 0 0 0 REV__ENSG00000134504|ENST00000580059|KCTD1 REV__ENSG00000134504|ENST00000580059|KCTD1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 590.867289 1179.72002 0.50785 0.00030007 -0.7766 -0.00045887 -0.26875 -0.0001588 590.8665504653826 95.377 0.88856 99.141 98.799 99.687 3.7648 0.024431 4.4276E-06 NaN 24.991 305 118 4 NaN NaN NaN NaN 0 NaN NaN 0 883290 + 15106 19101 9703 9709 0.13735296028130506 IVSYIVNGEL 10 Unmodified _IVSYIVNGEL_ 0 0 0 L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|78|3|anti-sense L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|78|3|anti-sense L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.80859375 2 553.808239 1105.60193 0.28304 0.00015675 -0.54723 -0.00030306 -0.26419 -0.00014631 553.8080283723037 46.777 0.51686 50.128 49.858 50.374 3.3515 49 38 2 0 0 0 0.55724 1 10019 10019 4.5289 0.58447 1 92982 15107 12721 9704 9710 18452 18452 0.05334878928965736 IVTGPELKM 9 Unmodified _IVTGPELKM_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|304|3|anti-sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|304|3|anti-sense MSMS UPN46_class_I_Rep_3 1 494.2836608886719 2 494.280803 986.547053 NaN NaN NaN NaN NaN NaN NaN 81.063 1 81.063 80.563 81.563 0 0 0 0 0.39518 1 19124 19124 1.8442 1.1539 1 + 15108 24146 9705 9711 18453 18453 0.05324168856691358 IVTKDIKPINI 11 Unmodified _IVTKDIKPINI_ 0 0 0 L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|7|1|sense L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|7|1|sense L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 627.3828735351562 2 627.395013 1252.77547 NaN NaN NaN NaN NaN NaN NaN 104.63 1 108.39 107.89 108.89 3.7627 0 0 0 0.38417 1 25696 25696 2.9952 0 1 15109 13131 9706 9712 18454 18454 0.15919664705234027 IVTLKPFR 8 Unmodified _IVTLKPFR_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MSMS UPN48_class_I_Rep_1 5 487.31329345703125 2 487.313295 972.612037 NaN NaN NaN NaN NaN NaN NaN 56.219 1 59.72 59.22 60.22 3.5014 0 0 0 0.36226 1 12076 12076 19.257 0 1 + 15110 19339 9707 9713 18455 18455 0.12463531444836917 IVTLKPFR 8 Unmodified _IVTLKPFR_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MULTI-MSMS UPN48_class_I_Rep_2 6 487.3132019042969 2 487.313295 972.612037 0.36825 0.00017945 -0.34764 -0.00016941 0.020616 1.0046E-05 487.3130087948834 56.462 0.13276 59.995 59.902 60.035 3.5333 15 11 2 0 0 0 0.82752 1 12131 12131 30.637 0 1 91009 + 15111 19339 9707 9713 18456 18456 0.12463531444836917 IVTLKPFR 8 Unmodified _IVTLKPFR_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MSMS UPN48_class_I_Rep_2 6 487.3134460449219 2 487.313295 972.612037 NaN NaN NaN NaN NaN NaN NaN 56.197 1 59.731 59.231 60.231 3.5333 0 0 0 0.34217 1 12047 12047 24.021 0 1 + 15112 19339 9707 9713 18457 18457 0.12463531444836917 IVTPGASCVIT 11 Unmodified _IVTPGASCVIT_ 0 0 0 REV__LTR48B_dup686|chr11:57713562-57714103:-|1.191081241166618|0.0260705388231086|5.51|151.0|16|3|sense REV__LTR48B_dup686|chr11:57713562-57714103:-|1.191081241166618|0.0260705388231086|5.51|151.0|16|3|sense MSMS UPN47_class_I_Rep_1 2 530.7881469726562 2 530.788992 1059.56343 NaN NaN NaN NaN NaN NaN NaN 77.243 1 80.658 80.158 81.158 3.4149 0 0 0 0.30011 1 19155 19155 12.241 0.74595 1 + 15113 30935 9708 9714 18458 18458 0.03603250022774773 IVTTRRQT 8 Unmodified _IVTTRRQT_ 0 0 0 REV__L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|35|3|sense REV__L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|35|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 487.7908020019531 2 487.790715 973.566878 0.27524 0.00013426 -0.70589 -0.00034433 -0.43065 -0.00021007 487.79009742509834 75.376 0.70506 78.689 78.489 79.194 3.3127 103 66 2 0 0 0 0.72333 1 18751 18751 4.3292 0 1 203280 + 15114 28389 9709 9715 18459 18459 0.0790368091164737 IVTTTKRKE 9 Unmodified _IVTTTKRKE_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MULTI-MSMS UPN46_class_I_Rep_3 1 538.3272705078125 2 538.327131 1074.63971 0.35629 0.0001918 0.19483 0.00010488 0.55112 0.00029668 538.327110650199 96.072 0.14207 96.072 96.044 96.186 0 29 16 3 0 0 0 0.48846 1 23377 23377 1.8442 0 1 955630 15115 4365 9710 9716 18460 18460 0.10537389914429696 IVTTTKRKE 9 Unmodified _IVTTTKRKE_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 538.327131 1074.63971 0.35629 0.0001918 0.19483 0.00010488 0.55112 0.00029668 538.327110650199 96.072 0.14207 96.072 96.044 96.186 0 0.03289 0.00041729 NaN 1.8442 29 16 3 NaN NaN NaN NaN 0 NaN NaN 0 955630 15116 4365 9710 9716 0.10537389914429696 IVTTTKRKE 9 Unmodified _IVTTTKRKE_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MULTI-MATCH UPN47_class_I_Rep_2 3 2 538.327131 1074.63971 0.56731 0.0003054 -0.48582 -0.00026153 0.081489 4.3868E-05 538.3267576763242 92.672 0.15472 96.137 96.089 96.244 3.4652 0.098632 -0.00031554 NaN 1.8442 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 232810 15117 4365 9710 9716 0.10537389914429696 IVTTTKRKE 9 Unmodified _IVTTTKRKE_ 0 0 0 nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A nc|ENSG00000168356|Q9UI33-3|SCN11A MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 538.327131 1074.63971 0.46381 0.00024968 -0.28603 -0.00015398 0.17779 9.5707E-05 538.326959261749 92.144 0.75384 95.907 95.886 96.639 3.7629 -0.13152 -0.00010043 NaN 1.8442 151 108 2 NaN NaN NaN NaN 0 NaN NaN 0 769660 15118 4365 9710 9716 0.10537389914429696 IVVDAIDVLK 10 Unmodified _IVVDAIDVLK_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN48_class_I_Rep_2 6 542.8341064453125 2 542.834257 1083.65396 0.52249 0.00028362 -0.087323 -4.7402E-05 0.43517 0.00023622 542.8339760105405 63.881 0.32124 67.355 67.202 67.523 3.4743 34 23 2 0 0 0 0.51021 1 14416 14416 10.8 5.0677 1 57343 15119 5749 9711 9717 18461 18461 0.11548042342678855 IVVDRLTVL 9 Unmodified _IVVDRLTVL_ 0 0 0 REV__ENST00000334116.7_2_19:37042871-37064163:-|nuORF REV__ENST00000334116.7_2_19:37042871-37064163:-|nuORF MSMS UPN47_class_I_Rep_1 2 514.3289794921875 2 514.329142 1026.64373 NaN NaN NaN NaN NaN NaN NaN 65.784 1 69.142 68.642 69.642 3.3576 0 0 0 0.32573 1 15714 15714 9.3831 0.63772 1 + 15120 20871 9712 9718 18462 18462 0.13147479408121399 IVVSLRFPIPK 11 Unmodified _IVVSLRFPIPK_ 0 0 0 nc|ENSG00000167528|Q96N77-2|ZNF641;ENSG00000167528|ENST00000547026|ZNF641;nc|ENSG00000167528|Q96N77|ZNF641 nc|ENSG00000167528|Q96N77-2|ZNF641 nc|ENSG00000167528|Q96N77-2|ZNF641 MULTI-SECPEP UPN48_class_I_Rep_1 5 634.3776245117188 2 634.908091 1267.80163 0.43232 0.00027448 0.15613 9.9127E-05 0.58845 0.00037361 634.9080359717149 105.31 0.13831 108.93 108.88 109.02 3.6247 28 19 2 0 0 0 22.551 1 25364 25364 0.30703 0 1 523690 15121 4309 9713 9719 18463 18463 0.17843978667360716 IVWNGLHMK 9 Unmodified _IVWNGLHMK_ 0 0 0 HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|94|1|anti-sense HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|94|1|anti-sense HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|94|1|anti-sense MSMS UPN47_class_I_Rep_3 4 549.30126953125 2 549.299862 1096.58517 NaN NaN NaN NaN NaN NaN NaN 99.269 1 102.7 102.2 103.2 3.4328 0 0 0 0.38639 1 24553 24553 3.9444 1.6417 1 15122 8331 9714 9720 18464 18464 0.040740995620353715 IVWTLHEI 8 Unmodified _IVWTLHEI_ 0 0 0 REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|46|2|sense REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|46|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 505.7872009277344 2 505.78711 1009.55967 0.16936 8.5659E-05 -0.14098 -7.1307E-05 0.028375 1.4352E-05 505.78700220863345 57.476 0.53692 60.644 60.455 60.992 3.1681 86 45 2 0 0 0 0.82752 1 13317 13317 8.5933 0 1 129490 + 15123 25031 9715 9721 18465 18465 0.055269483112283524 IVYFKITRRIV 11 Unmodified _IVYFKITRRIV_ 0 0 0 L1MA4_dup7496|chr12:11659927-11660202:+|3.331741592084371|0.011348117633862|8.2|151.0|2|1|sense L1MA4_dup7496|chr12:11659927-11660202:+|3.331741592084371|0.011348117633862|8.2|151.0|2|1|sense L1MA4_dup7496|chr12:11659927-11660202:+|3.331741592084371|0.011348117633862|8.2|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 470.1780700683594 3 469.966007 1406.87619 NaN NaN NaN NaN NaN NaN NaN 73.73 1 73.73 73.23 74.23 0 0 0 0 0.38417 1 17102 17102 0.094841 0.011491 1 15124 9725 9716 9722 18466 18466 0.1890274147870059 IVYPGIAVF 9 Unmodified _IVYPGIAVF_ 0 0 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MSMS UPN48_class_I_Rep_1 5 489.786865234375 2 489.786579 977.558604 NaN NaN NaN NaN NaN NaN NaN 82.591 1 86.166 85.666 86.666 3.5753 0 0 0 0.12887 1 19728 19728 20.871 7.3633 1 15125 5014 9717 9723 18467 18467 0.06892733942333962 IVYPGIAVF 9 Unmodified _IVYPGIAVF_ 0 0 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 489.7866516113281 2 489.786579 977.558604 0.25842 0.00012657 -0.051581 -2.5264E-05 0.20684 0.00010131 489.7865946032513 82.47 0.3138 86.139 86.037 86.35 3.669 55 38 2 0 0 0 0.12962 1 19583 19583 28.173 14.665 1 76485 15126 5014 9717 9723 18468 18468 0.06892733942333962 IVYTPGTHV 9 Unmodified _IVYTPGTHV_ 0 0 0 REV__nc|ENSG00000283703|P0DP72|VSIG10L2 REV__nc|ENSG00000283703|P0DP72|VSIG10L2 MSMS UPN47_class_I_Rep_2 3 493.7685546875 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 46.796 1 50.147 49.647 50.647 3.3515 0 0 0 0.38639 1 9988 9988 3.9444 1.3669 1 + 15127 21453 9718 9724 18469 18469 0.029940714145368474 IWAHPVHY 8 Unmodified _IWAHPVHY_ 0 0 0 ENST00000478399.5_1_3:119298211-119298877:+|nuORF ENST00000478399.5_1_3:119298211-119298877:+|nuORF ENST00000478399.5_1_3:119298211-119298877:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.7646789550781 2 511.763969 1021.51339 NaN NaN NaN NaN NaN NaN NaN 28.79 1 32.421 31.921 32.921 3.6311 0 0 0 0.40738 1 4005 4005 0.79363 0 1 15128 6982 9719 9725 18470 18470 0.003489281997985927 IWCWTLELL 9 Unmodified _IWCWTLELL_ 0 0 0 REV__ENST00000303562.8_1_14:75748398-75748518:+|nuORF REV__ENST00000303562.8_1_14:75748398-75748518:+|nuORF MSMS UPN48_class_I_Rep_3 7 588.8106079101562 2 588.809728 1175.6049 NaN NaN NaN NaN NaN NaN NaN 37.864 1 41.523 41.023 42.023 3.6595 0 0 0 0.38478 1 6433 6433 4.3292 0 1 + 15129 21679 9720 9726 18471 18471 0.024124307821011826 IWDNLPILR 9 Unmodified _IWDNLPILR_ 0 0 0 MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|18|1|anti-sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|18|1|anti-sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 570.328857421875 2 570.332216 1138.64988 NaN NaN NaN NaN NaN NaN NaN 48.984 1 52.613 52.113 53.113 3.6291 0 0 0 0.18866 1 9785 9785 17.113 0.1706 1 15130 16348 9721 9727 18472 18472 0.08609997639655376 IWFAGILF 8 Unmodified _IWFAGILF_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|241|2|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|241|2|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|241|2|anti-sense MSMS UPN46_class_I_Rep_3 1 483.7765197753906 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 110.96 1 110.96 110.46 111.46 0 0 0 0 0.40738 1 27343 27343 0.79363 0 1 15131 14105 9722 9728 18473 18473 0.053327686334796454 IWFWSNGFG 9 Unmodified _IWFWSNGFG_ 0 0 0 L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|220|3|anti-sense L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|220|3|anti-sense L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|220|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.763671875 2 557.261259 1112.50797 0.4899 0.000273 -0.74473 -0.00041501 -0.25483 -0.00014201 557.7633829103728 72.833 0.57983 76.398 76.056 76.636 3.5645 68 49 3 0 0 0 0.48414 1 17137 17137 2.3027 0.24298 1 167730 15132 11823 9723 9729 18474 18474 -0.043787953826722514 IWFYWKMLP 9 Unmodified _IWFYWKMLP_ 0 0 0 L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|24|2|sense L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|24|2|sense L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 642.333740234375 2 642.335913 1282.65727 NaN NaN NaN NaN NaN NaN NaN 51.394 1 51.394 50.894 51.894 0 0 0 0 0.40038 1 10921 10921 0.6015 0.14316 1 15133 13209 9724 9730 18475 18475 0.02725013915710406 IWGDWEQIYV 10 Unmodified _IWGDWEQIYV_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.8793029785156 3 436.880156 1307.61864 0.10488 4.5818E-05 -1.0127 -0.00044242 -0.90779 -0.0003966 436.8791983924538 86.549 0.22331 90.165 90.082 90.306 3.6153 45 29 2 0 0 0 0.56454 1 21635 21635 0.62683 0.17231 1 72721 + 15134 24905 9725 9731 18476 18476 -0.022866201851002188 IWGDWEQIYV 10 Unmodified _IWGDWEQIYV_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.880156 1307.61864 -0.22411 -9.7908E-05 -0.7283 -0.00031818 -0.95241 -0.00041609 436.8791983008954 86.419 0.1263 89.86 89.816 89.942 3.4407 0.018029 4.5976E-05 NaN 0.62683 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 45655 + 15135 24905 9725 9731 -0.022866201851002188 IWGDWEQIYV 10 Unmodified _IWGDWEQIYV_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.880156 1307.61864 -0.34402 -0.0001503 -0.49687 -0.00021707 -0.84089 -0.00036737 436.8794391379179 86.331 0.17222 89.711 89.629 89.801 3.3801 -0.1313 0.0003493 NaN 0.62683 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 74731 + 15136 24905 9725 9731 -0.022866201851002188 IWGDWEQIYV 10 Unmodified _IWGDWEQIYV_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.880156 1307.61864 0.10713 4.6803E-05 -0.71964 -0.0003144 -0.61252 -0.0002676 436.87919430435795 86.038 0.32774 89.744 89.536 89.864 3.7058 -0.098345 5.7321E-05 NaN 0.62683 39 34 2 NaN NaN NaN NaN 0 NaN NaN 0 68891 + 15137 24905 9725 9731 -0.022866201851002188 IWGDWEQIYV 10 Unmodified _IWGDWEQIYV_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|140|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.880156 1307.61864 0.16294 7.1187E-05 -0.57287 -0.00025028 -0.40993 -0.00017909 436.8792990746086 85.961 0.13514 89.731 89.606 89.741 3.7701 -0.11118 0.00024968 NaN 0.62683 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 55178 + 15138 24905 9725 9731 -0.022866201851002188 IWGWHRLR 8 Unmodified _IWGWHRLR_ 0 0 0 REV__HERVP71A-int_dup35|chr2:190217528-190219239:+|1.707588468195792|0.3697423980469227|2.21|151.0|41|3|sense REV__HERVP71A-int_dup35|chr2:190217528-190219239:+|1.707588468195792|0.3697423980469227|2.21|151.0|41|3|sense MSMS UPN46_class_I_Rep_3 1 562.3336181640625 2 562.317235 1122.61992 NaN NaN NaN NaN NaN NaN NaN 80.764 1 80.764 80.264 81.264 0 0 0 0 0.40738 1 19040 19040 0.79363 0 1 + 15139 23932 9726 9732 18477 18477 0.0635110348496255 IWHPLSIEF 9 Unmodified _IWHPLSIEF_ 0 0 0 REV__THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|12|1|sense REV__THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 571.3079223632812 2 571.305667 1140.59678 NaN NaN NaN NaN NaN NaN NaN 68.33 1 71.781 71.281 72.281 3.4517 0 0 0 0.38478 1 15770 15770 4.3292 0 1 + 15140 32250 9727 9733 18478 18478 0.03210619856986341 IWHQKQWQR 9 Unmodified _IWHQKQWQR_ 0 0 0 L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|107|3|sense L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|107|3|sense L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|107|3|sense MSMS UPN47_class_I_Rep_1 2 437.2351989746094 3 437.235267 1308.68397 NaN NaN NaN NaN NaN NaN NaN 46.52 1 50.22 49.72 50.72 3.6999 0 0 0 0.40177 1 9874 9874 0.26902 0 1 15141 11015 9728 9734 18479 18479 0.04197838851268898 IWHRPILY 8 Unmodified _IWHRPILY_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MSMS UPN48_class_I_Rep_2 6 549.3191528320312 2 549.316369 1096.61818 NaN NaN NaN NaN NaN NaN NaN 91.855 1 95.618 95.118 96.118 3.7629 0 0 0 0.40581 1 21872 21872 2.8892 0.39073 1 + 15142 19666 9729 9735 18480 18480 0.07374049676377581 IWHRTYHI 8 Unmodified _IWHRTYHI_ 0 0 0 LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|21|1|sense LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|21|1|sense LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|21|1|sense MSMS UPN47_class_I_Rep_2 3 563.3004760742188 2 563.30125 1124.58795 NaN NaN NaN NaN NaN NaN NaN 87.768 1 91.215 90.715 91.715 3.4471 0 0 0 0.40746 1 21818 21818 0.69038 0 1 15143 15502 9730 9736 18481 18481 0.030636910111752513 IWHYIKRPH 9 Unmodified _IWHYIKRPH_ 0 0 0 L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|9|1|sense L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|9|1|sense L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 625.3515014648438 2 625.351274 1248.688 NaN NaN NaN NaN NaN NaN NaN 65.627 1 69.079 68.579 69.579 3.4516 0 0 0 0.40038 1 14945 14945 0.6015 0 1 15144 13958 9731 9737 18482 18482 0.07359928344976652 IWIIRFRLRWS 11 Unmodified _IWIIRFRLRWS_ 0 0 0 THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|22|2|sense THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|22|2|sense THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 516.3130493164062 3 515.977017 1544.90922 NaN NaN NaN NaN NaN NaN NaN 103.03 1 106.53 106.03 107.03 3.5057 0 0 0 0.38417 1 25302 25302 0.094841 0 1 15145 32874 9732 9738 18483 18483 0.1585636832144246 IWILCPRW 8 Unmodified _IWILCPRW_ 0 0 0 REV__ENST00000420069.3_3_11:67195969-67200219:+|nuORF REV__ENST00000420069.3_3_11:67195969-67200219:+|nuORF MSMS UPN48_class_I_Rep_1 5 544.2564697265625 2 543.799497 1085.58444 NaN NaN NaN NaN NaN NaN NaN 115.26 1 118.89 118.39 119.39 3.6282 0 0 0 0.40738 1 28036 28036 0.79363 0 1 + 15146 22241 9733 9739 18484 18484 0.04507304912954169 IWIRGHPKPI 10 Unmodified _IWIRGHPKPI_ 0 0 0 L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense MSMS UPN47_class_I_Rep_3 4 406.2484436035156 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 80.538 1 83.847 83.347 84.347 3.309 0 0 0 0.53105 1 20148 20148 0.69767 0 1 15147 8527 9734 9740 18485 18485 0.1248138552182354 IWIRGHPKPI 10 Unmodified _IWIRGHPKPI_ 0 0 0 L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense MSMS UPN48_class_I_Rep_2 6 406.24853515625 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 79.916 1 83.56 83.06 84.06 3.6446 0 0 0 0.53105 1 18993 18993 0.69767 0.07084 1 15148 8527 9734 9740 18486 18486 0.1248138552182354 IWIRGHPKPI 10 Unmodified _IWIRGHPKPI_ 0 0 0 L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|152|2|anti-sense MSMS UPN48_class_I_Rep_2 6 406.2487487792969 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 99.952 1 103.71 103.21 104.21 3.7575 0 0 0 0.53105 1 23744 23744 0.69767 0 1 15149 8527 9734 9740 18487 18487 0.1248138552182354 IWKLAMESTY 10 Unmodified _IWKLAMESTY_ 0 0 0 REV__nc|ENSG00000138778|Q02224-3|CENPE REV__nc|ENSG00000138778|Q02224-3|CENPE MSMS UPN48_class_I_Rep_3 7 621.3162231445312 2 621.315374 1240.6162 NaN NaN NaN NaN NaN NaN NaN 76.285 1 79.868 79.368 80.368 3.5831 0 0 0 0.53105 1 17962 17962 1.4819 0.41044 1 + 15150 19294 9735 9741 18488 18488 0.005512080856078683 IWKLVRWN 8 Unmodified _IWKLVRWN_ 0 0 0 LTR37B_dup828|chr6:136660690-136661121:+|1.1168544094968555|0.0817608885093032|3.77|151.0|22|2|anti-sense LTR37B_dup828|chr6:136660690-136661121:+|1.1168544094968555|0.0817608885093032|3.77|151.0|22|2|anti-sense LTR37B_dup828|chr6:136660690-136661121:+|1.1168544094968555|0.0817608885093032|3.77|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.8272094726562 2 557.829643 1113.64473 NaN NaN NaN NaN NaN NaN NaN 73.866 1 77.347 76.847 77.847 3.4812 0 0 0 0.40604 1 17431 17431 2.5775 0.51773 1 15151 15631 9736 9742 18489 18489 0.0924573856771076 IWKSIREKR 9 Unmodified _IWKSIREKR_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-SECPEP UPN47_class_I_Rep_1 2 608.405517578125 2 608.369664 1214.72478 0.53155 0.00032338 -1.3218 -0.00080415 -0.79027 -0.00048078 608.3684194026097 108.18 0.35758 111.82 111.63 111.98 3.6355 52 34 2 0 0 0 0.11884 1 26523 26523 9.3831 2.66 1 844610 15152 1621 9737 9743 18490 18490 0.1260018017087532 IWKSIREKR 9 Unmodified _IWKSIREKR_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH UPN48_class_I_Rep_3 7 2 608.369664 1214.72478 0.556 0.00033825 -0.10392 -6.3221E-05 0.45208 0.00027503 608.3690017327988 108.14 0.089035 111.82 111.76 111.85 3.6813 0.0023439 0.0012127 NaN 9.3831 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1304900 15153 1621 9737 9743 0.1260018017087532 IWLDLIHSM 9 Unmodified _IWLDLIHSM_ 0 0 0 REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.2984619140625 2 564.299527 1126.5845 NaN NaN NaN NaN NaN NaN NaN 36.519 1 40.189 39.689 40.689 3.6692 0 0 0 0.31276 1 6825 6825 10.074 0.6908 1 + 15154 21505 9738 9744 18491 18491 0.02627260122289954 IWLDLIHSM 9 Unmodified _IWLDLIHSM_ 0 0 0 REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.2999267578125 2 564.299527 1126.5845 NaN NaN NaN NaN NaN NaN NaN 36.6 1 40.269 39.769 40.769 3.6692 0 0 0 0.31276 1 6850 6850 10.074 0.6908 1 + 15155 21505 9738 9744 18492 18492 0.02627260122289954 IWLDLIHSM 9 Unmodified _IWLDLIHSM_ 0 0 0 REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.2958984375 2 564.299527 1126.5845 NaN NaN NaN NaN NaN NaN NaN 36.983 1 40.23 39.73 40.73 3.247 0 0 0 0.39518 1 7038 7038 1.8442 0.36234 1 + 15156 21505 9738 9744 18493 18493 0.02627260122289954 IWLDLIHSM 9 Unmodified _IWLDLIHSM_ 0 0 0 REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF REV__ENST00000240093.7_1_8:28378239-28384707:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.2969360351562 2 564.299527 1126.5845 NaN NaN NaN NaN NaN NaN NaN 37.051 1 40.298 39.798 40.798 3.247 0 0 0 0.38639 1 7059 7059 3.9444 0.94915 1 + 15157 21505 9738 9744 18494 18494 0.02627260122289954 IWLDRSLLR 9 Unmodified _IWLDRSLLR_ 0 0 0 L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|51|1|anti-sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|51|1|anti-sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|51|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 586.8063354492188 2 586.35094 1170.68733 0.5167 0.00030297 0.25117 0.00014728 0.76787 0.00045024 586.8527093477431 64.433 0.5422 67.907 67.766 68.308 3.4743 71 39 2 0 0 0 0.42249 1 14549 14549 6.7232 0 1 238660 15158 8818 9739 9745 18495 18495 0.10881088905284741 IWLFARIRK 9 Unmodified _IWLFARIRK_ 0 0 0 REV__Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|92|1|anti-sense REV__Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|92|1|anti-sense MSMS UPN46_class_I_Rep_3 1 601.8789672851562 2 601.879668 1201.74478 NaN NaN NaN NaN NaN NaN NaN 48.425 1 48.425 47.925 48.925 0 0 0 0 0.40038 1 10088 10088 0.6015 0 1 + 15159 32397 9740 9746 18496 18496 0.15197975901469363 IWLFILHSHK 10 Unmodified _IWLFILHSHK_ 0 0 0 REV__L1MEi_dup4582|chr17:2973545-2974059:+|1.9014539408138|0.008794551701643|7.76|151.0|30|2|anti-sense REV__L1MEi_dup4582|chr17:2973545-2974059:+|1.9014539408138|0.008794551701643|7.76|151.0|30|2|anti-sense MSMS UPN46_class_I_Rep_3 1 647.3472900390625 2 647.376958 1292.73936 NaN NaN NaN NaN NaN NaN NaN 60.885 1 60.885 60.385 61.385 0 0 0 0 0.53105 1 13524 13524 1.6526 0.17072 1 + 15160 28805 9741 9747 18497 18497 0.10470252319009887 IWLFYYQEN 9 Unmodified _IWLFYYQEN_ 0 0 0 ENSG00000196418.12,ZNF124,chr1,-,I1.1,247159868,247171847|60|10.05|1|intron ENSG00000196418.12,ZNF124,chr1,-,I1.1,247159868,247171847|60|10.05|1|intron ENSG00000196418.12,ZNF124,chr1,-,I1.1,247159868,247171847|60|10.05|1|intron MSMS UPN47_class_I_Rep_3 4 638.3056640625 2 638.305864 1274.59717 NaN NaN NaN NaN NaN NaN NaN 75.368 1 78.614 78.114 79.114 3.2464 0 0 0 0.40038 1 18694 18694 0.6015 0 1 15161 5302 9742 9748 18498 18498 -0.029140052138245665 IWLHLWRPRHK 11 Unmodified _IWLHLWRPRHK_ 0 0 0 REV__L1MC_dup2124|chr4:139994664-139996778:-|6.33289462205839|0.0227066938591079|8.12|151.0|75|3|sense REV__L1MC_dup2124|chr4:139994664-139996778:-|6.33289462205839|0.0227066938591079|8.12|151.0|75|3|sense MSMS UPN46_class_I_Rep_3 1 514.637451171875 3 514.636995 1540.88916 NaN NaN NaN NaN NaN NaN NaN 12.33 1 12.33 11.83 12.83 0 0 0 0 0.38417 1 85 85 0.45452 0.046251 1 + 15162 26460 9743 9749 18499 18499 0.1403461738148053 IWLKRNVP 8 Unmodified _IWLKRNVP_ 0 0 0 REV__nc|ENSG00000168386|Q4L180-6|FILIP1L REV__nc|ENSG00000168386|Q4L180-6|FILIP1L MSMS UPN48_class_I_Rep_3 7 513.3172607421875 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 47.434 1 51.07 50.57 51.57 3.6363 0 0 0 0.40625 1 9307 9307 2.3027 0.24298 1 + 15163 20271 9744 9750 18500 18500 0.10686049676360199 IWLKRNVP 8 Unmodified _IWLKRNVP_ 0 0 0 REV__nc|ENSG00000168386|Q4L180-6|FILIP1L REV__nc|ENSG00000168386|Q4L180-6|FILIP1L MSMS UPN48_class_I_Rep_3 7 513.3168334960938 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 54.481 1 58.05 57.55 58.55 3.5694 0 0 0 0.40625 1 11458 11458 2.3027 0.24298 1 + 15164 20271 9744 9750 18501 18501 0.10686049676360199 IWLLQTRRLP 10 Unmodified _IWLLQTRRLP_ 0 0 0 nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A nc|ENSG00000204469|P48634-2|PRRC2A nc|ENSG00000204469|P48634-2|PRRC2A MSMS UPN48_class_I_Rep_1 5 648.400146484375 2 648.400964 1294.78738 NaN NaN NaN NaN NaN NaN NaN 85.833 1 89.439 88.939 89.939 3.6059 0 0 0 0.53105 1 20544 20544 0.45834 0 1 15165 16806 9745 9751 18502 18502 0.15177326239086142 IWLLRHEWWRW 11 Unmodified _IWLLRHEWWRW_ 0 0 0 REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF MSMS UPN47_class_I_Rep_2 3 560.7307739257812 3 560.968522 1679.88374 NaN NaN NaN NaN NaN NaN NaN 83.487 1 86.899 86.399 87.399 3.4116 0 0 0 0.38417 1 20811 20811 0 0 1 + 15166 23041 9746 9752 18503 18503 0.07098893799002326 IWMHNKVK 8 Unmodified _IWMHNKVK_ 0 0 0 REV__nc|ENSG00000131747|P11388-4|TOP2A REV__nc|ENSG00000131747|P11388-4|TOP2A MSMS UPN48_class_I_Rep_3 7 528.2957763671875 2 528.294579 1054.57461 NaN NaN NaN NaN NaN NaN NaN 86.833 1 90.623 90.123 91.123 3.7905 0 0 0 0.40364 1 20606 20606 5.7604 1.4312 1 + 15167 31980 9747 9753 18504 18504 0.04950116907593838 IWMLPALK 8 Unmodified _IWMLPALK_ 0 0 0 MLT2A1_dup3031|chr12:121254829-121255209:+|1.0148284620650991|0.1765862518521347|2.52|151.0|4|1|sense MLT2A1_dup3031|chr12:121254829-121255209:+|1.0148284620650991|0.1765862518521347|2.52|151.0|4|1|sense MLT2A1_dup3031|chr12:121254829-121255209:+|1.0148284620650991|0.1765862518521347|2.52|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 486.2919921875 2 486.290974 970.567395 NaN NaN NaN NaN NaN NaN NaN 81.527 1 81.527 81.027 82.027 0 0 0 0 0.40738 1 19256 19256 0.79363 0 1 15168 16498 9748 9754 18505 18505 0.08093384307153428 IWMPFIHF 8 Unmodified _IWMPFIHF_ 0 0 0 L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|79|1|anti-sense L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|79|1|anti-sense L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|79|1|anti-sense MSMS UPN48_class_I_Rep_3 7 545.7843017578125 2 545.780773 1089.54699 NaN NaN NaN NaN NaN NaN NaN 54.417 1 57.986 57.486 58.486 3.5694 0 0 0 0.37152 1 11438 11438 17.087 2.5049 1 15169 8827 9749 9755 18506 18506 0.005802136473221253 IWNEWYWKNFV 11 Unmodified _IWNEWYWKNFV_ 0 0 0 REV__L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|20|1|sense REV__L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.2601318359375 3 528.925988 1583.75613 -0.20465 -0.00010824 1.656 0.00087588 1.4513 0.00076763 528.9268187437119 30.441 0.41389 33.923 33.602 34.016 3.4821 48 33 2 0 0 0 0.68132 1 4982 4982 0.40827 0.31342 1 76388 + 15170 25667 9750 9756 18507 18507 -0.01239291585693536 IWNGKIAY 8 Unmodified _IWNGKIAY_ 0 0 0 REV__ENSG00000101074|ENST00000217043|R3HDML REV__ENSG00000101074|ENST00000217043|R3HDML MSMS UPN46_class_I_Rep_3 1 482.7666015625 2 482.766178 963.517802 NaN NaN NaN NaN NaN NaN NaN 68.411 1 68.411 67.911 68.911 0 0 0 0 0.40625 1 15620 15620 2.3027 0 1 + 15171 18145 9751 9757 18508 18508 0.034583926226900985 IWNRLRRRKR 10 Unmodified _IWNRLRRRKR_ 0 0 0 Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.3075866699219 3 485.30776 1452.90145 NaN NaN NaN NaN NaN NaN NaN 52.776 1 55.971 55.471 56.471 3.1948 0 0 0 0.53105 1 11851 11851 0.69767 0 1 15172 33297 9752 9758 18509 18509 0.19311653844511056 IWNRWIRVL 9 Unmodified _IWNRWIRVL_ 0 0 0 REV__L1MD2_dup8084|chr12:118337082-118338081:+|5.864717802561418|0.0185668617927362|8.3|151.0|5|1|sense REV__L1MD2_dup8084|chr12:118337082-118338081:+|5.864717802561418|0.0185668617927362|8.3|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 628.3740844726562 2 628.374749 1254.73495 0.55337 0.00034772 -1.1999 -0.00075398 -0.64652 -0.00040625 628.3738608777296 35.351 0.11003 35.351 35.252 35.362 0 17 7 3 0 0 0 0.50088 1 6409 6409 0.52476 0 1 377200 + 15173 27439 9753 9759 18510 18510 0.11776787896110363 IWPDAFHC 8 Unmodified _IWPDAFHC_ 0 0 0 ENST00000482993.6_3_10:135272457-135273512:+|nuORF;ENST00000463137.5_1_10:135271820-135273512:+|nuORF;nc|ENSG00000214279|Q4G0T1-3|SCART1;ENST00000488261.6_3_10:135271820-135304727:+|nuORF;ENSG00000214279|ENST00000640237|SCART1 ENST00000482993.6_3_10:135272457-135273512:+|nuORF ENST00000482993.6_3_10:135272457-135273512:+|nuORF MSMS UPN47_class_I_Rep_3 4 494.7187194824219 2 494.720913 987.427273 NaN NaN NaN NaN NaN NaN NaN 27.853 1 31.187 30.687 31.687 3.3337 0 0 0 0.40604 1 4289 4289 2.5775 0.27475 1 15174 5612 9754 9760 18511 18511 -0.06694399697232711 IWRLLFREC 9 Unmodified _IWRLLFREC_ 0 0 0 LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|3|1|sense LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|3|1|sense LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 618.3405151367188 2 618.339518 1234.66448 NaN NaN NaN NaN NaN NaN NaN 12.981 1 12.981 12.481 13.481 0 0 0 0 0.4029 1 263 263 0 0 1 15175 15615 9755 9761 18512 18512 0.056537465161909495 IWSFHFFVDV 10 Unmodified _IWSFHFFVDV_ 0 0 0 REV__L1MB7_dup5177|chr4:1732705-1733285:-|1.8936372982631011|0.1209358499913945|3.97|151.0|24|2|anti-sense REV__L1MB7_dup5177|chr4:1732705-1733285:-|1.8936372982631011|0.1209358499913945|3.97|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_2 3 432.8852233886719 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 101.15 1 104.65 104.15 105.15 3.5063 0 0 0 0.53105 1 24697 24697 0.62683 0.12087 1 + 15176 26281 9756 9762 18513 18513 -0.002097085972536661 IWSSVSTRL 9 Unmodified _IWSSVSTRL_ 0 0 0 ENST00000374280.3_1_1:26349336-26349810:+|nuORF ENST00000374280.3_1_1:26349336-26349810:+|nuORF ENST00000374280.3_1_1:26349336-26349810:+|nuORF MSMS UPN48_class_I_Rep_1 5 524.7174072265625 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 41.87 1 45.378 44.878 45.878 3.5079 0 0 0 0.29868 1 7680 7680 10.824 0.64053 1 15177 6429 9757 9763 18514 18514 0.049411453345555856 IWTGYFYPMP 10 Unmodified _IWTGYFYPMP_ 0 0 0 THE1C-int_dup603|chr5:37136005-37137524:-|1.0112380684301203|0.0553420844748713|4.19|151.0|14|1|sense THE1C-int_dup603|chr5:37136005-37137524:-|1.0112380684301203|0.0553420844748713|4.19|151.0|14|1|sense THE1C-int_dup603|chr5:37136005-37137524:-|1.0112380684301203|0.0553420844748713|4.19|151.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 637.7994995117188 2 637.79936 1273.58417 NaN NaN NaN NaN NaN NaN NaN 40.51 1 44.252 43.752 44.752 3.7413 0 0 0 0.53105 1 7299 7299 1.6526 0 1 15178 32945 9758 9764 18515 18515 -0.04168159597566046 IWTMCLPF 8 Unmodified _IWTMCLPF_ 0 0 0 HERVH-int_dup1615|chr4:71036276-71036834:+|1.1278303466464266|0.0438975531806119|4.68|151.0|13|2|sense HERVH-int_dup1615|chr4:71036276-71036834:+|1.1278303466464266|0.0438975531806119|4.68|151.0|13|2|sense HERVH-int_dup1615|chr4:71036276-71036834:+|1.1278303466464266|0.0438975531806119|4.68|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 505.7453308105469 2 505.745542 1009.47653 NaN NaN NaN NaN NaN NaN NaN 66.104 1 69.59 69.09 70.09 3.4866 0 0 0 0.37715 1 15077 15077 15.768 3.2367 1 15179 8132 9759 9765 18516 18516 -0.027828277326420903 IWVESLYKEV 10 Unmodified _IWVESLYKEV_ 0 0 0 L1MA3_dup6489|chr11:77566994-77569808:-|1.2996992197713826|0.0702503898242956|4.21|150.0|19|1|sense L1MA3_dup6489|chr11:77566994-77569808:-|1.2996992197713826|0.0702503898242956|4.21|150.0|19|1|sense L1MA3_dup6489|chr11:77566994-77569808:-|1.2996992197713826|0.0702503898242956|4.21|150.0|19|1|sense MSMS UPN46_class_I_Rep_3 1 633.3428955078125 2 633.342446 1264.67034 NaN NaN NaN NaN NaN NaN NaN 51.053 1 51.053 50.553 51.553 0 0 0 0 0.53105 1 10824 10824 1.4819 0 1 15180 9606 9760 9766 18517 18517 0.04859123508799712 IWVMSVGQPQI 11 Unmodified _IWVMSVGQPQI_ 0 0 0 REV__ENST00000483956.1_1_3:127783757-127783923:+|nuORF REV__ENST00000483956.1_1_3:127783757-127783923:+|nuORF MSMS UPN48_class_I_Rep_3 7 629.3370361328125 2 629.336641 1256.65873 NaN NaN NaN NaN NaN NaN NaN 53.027 1 56.611 56.111 57.111 3.5836 0 0 0 0.38417 1 11010 11010 2.9952 1.151 1 + 15181 22588 9761 9767 18518 18518 0.04066603213823328 IWVPFVSLNP 10 Unmodified _IWVPFVSLNP_ 0 0 0 REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|198|3|anti-sense REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|198|3|anti-sense MSMS UPN47_class_I_Rep_1 2 586.2643432617188 2 586.329142 1170.64373 NaN NaN NaN NaN NaN NaN NaN 34.954 1 38.64 38.14 39.14 3.6859 0 0 0 0.53105 1 6353 6353 1.3295 0 1 + 15182 27306 9762 9768 18519 18519 0.06523479408156163 IWVSYKRK 8 Unmodified _IWVSYKRK_ 0 0 0 REV__ENST00000418351.1_1_15:44281261-44281585:-|nuORF REV__ENST00000418351.1_1_15:44281261-44281585:-|nuORF MSMS UPN48_class_I_Rep_1 5 539.9849853515625 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 98.989 1 102.6 102.1 103.1 3.6065 0 0 0 0.40738 1 23894 23894 0.79363 0.10326 1 + 15183 22232 9763 9769 18520 18520 0.09258032330808419 IWWPDLLIF 9 Unmodified _IWWPDLLIF_ 0 0 0 HERVK9-int_dup609|chr19:21412530-21417699:-|2.6696971222682127|0.2791161318887036|3.26|150.0|204|1|anti-sense HERVK9-int_dup609|chr19:21412530-21417699:-|2.6696971222682127|0.2791161318887036|3.26|150.0|204|1|anti-sense HERVK9-int_dup609|chr19:21412530-21417699:-|2.6696971222682127|0.2791161318887036|3.26|150.0|204|1|anti-sense MSMS UPN46_class_I_Rep_3 1 601.8340454101562 2 601.83406 1201.65357 NaN NaN NaN NaN NaN NaN NaN 44.135 1 44.135 43.635 44.635 0 0 0 0 0.40038 1 8868 8868 0.6015 0.076735 1 15184 8327 9764 9770 18521 18521 0.060806674134937566 IWWSSASEAQ 10 Unmodified _IWWSSASEAQ_ 0 0 0 REV__MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|79|2|anti-sense REV__MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|79|2|anti-sense MSMS UPN47_class_I_Rep_2 3 582.694091796875 2 582.769645 1163.52474 NaN NaN NaN NaN NaN NaN NaN 114.32 1 117.83 117.33 118.33 3.5109 0 0 0 0.53105 1 27835 27835 1.4819 0.41044 1 + 15185 31871 9765 9771 18522 18522 -0.05048339287372983 IWYCRRNR 8 Unmodified _IWYCRRNR_ 0 0 0 REV__ENST00000367188.4_1_1:204375292-204375355:-|nuORF REV__ENST00000367188.4_1_1:204375292-204375355:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 583.8025512695312 2 583.803634 1165.59272 -0.20628 -0.00012043 -1.1417 -0.00066655 -1.348 -0.00078698 583.8031281746207 28.531 0.68739 31.865 31.525 32.212 3.3338 75 59 2 0 0 0 0.82752 1 4494 4494 0.79363 0.19213 1 60660 + 15186 21924 9766 9772 18523 18523 0.01654251882268909 IWYMRLRW 8 Unmodified _IWYMRLRW_ 0 0 0 REV__LTR9_dup162|chr4:26346101-26346680:-|1.072253706606002|0.0198604800011214|5.75|151.0|24|1|anti-sense REV__LTR9_dup162|chr4:26346101-26346680:-|1.072253706606002|0.0198604800011214|5.75|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 612.698486328125 2 612.328953 1222.64335 NaN NaN NaN NaN NaN NaN NaN 45.641 1 49.157 48.657 49.657 3.5162 0 0 0 0.40738 1 8823 8823 0.79363 0 1 + 15187 31042 9767 9773 18524 18524 0.0409378120727979 IWYNIDEPR 9 Unmodified _IWYNIDEPR_ 0 0 0 L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|3|1|sense L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|3|1|sense L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.3002319335938 2 603.301113 1204.58767 0.48484 0.00029251 -0.69892 -0.00042166 -0.21407 -0.00012915 603.3005479571477 30.763 0.56035 34.305 34.002 34.563 3.542 102 53 2 0 0 0 0.49026 1 4521 4521 1.6526 0.17072 1 153250 15188 10420 9768 9774 18525 18525 -0.006437734993824051 IWYSLLLLN 9 Unmodified _IWYSLLLLN_ 0 0 0 Tigger3c_dup145|chr1:224141491-224141891:-|1.2503119037881556|0.0419928985645718|4.9|151.0|33|3|anti-sense Tigger3c_dup145|chr1:224141491-224141891:-|1.2503119037881556|0.0419928985645718|4.9|151.0|33|3|anti-sense Tigger3c_dup145|chr1:224141491-224141891:-|1.2503119037881556|0.0419928985645718|4.9|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_3 7 567.83203125 2 567.831517 1133.64848 NaN NaN NaN NaN NaN NaN NaN 84.718 1 88.467 87.967 88.967 3.7494 0 0 0 0.39428 1 20105 20105 2.0598 0 1 15189 33412 9769 9775 18526 18526 0.08700363550929069 IYACCDYPLL 10 Unmodified _IYACCDYPLL_ 0 0 0 L1ME1_dup3868|chr2:111209519-111211236:-|1.120318554578719|0.3225356577321161|1.8|151.0|110|3|anti-sense L1ME1_dup3868|chr2:111209519-111211236:-|1.120318554578719|0.3225356577321161|1.8|151.0|110|3|anti-sense L1ME1_dup3868|chr2:111209519-111211236:-|1.120318554578719|0.3225356577321161|1.8|151.0|110|3|anti-sense MSMS UPN47_class_I_Rep_3 4 587.2702026367188 2 587.269578 1172.5246 NaN NaN NaN NaN NaN NaN NaN 49.884 1 53.11 52.61 53.61 3.2262 0 0 0 0.53105 1 10972 10972 1.6526 0.17072 1 15190 12402 9770 9776 18527 18527 -0.05475798603242765 IYAFKKLHLL 10 Unmodified _IYAFKKLHLL_ 0 0 0 REV__L1MC3_dup5457|chr7:67211459-67212862:-|1.9228092878409104|0.054603469822904|5.14|151.0|58|1|anti-sense REV__L1MC3_dup5457|chr7:67211459-67212862:-|1.9228092878409104|0.054603469822904|5.14|151.0|58|1|anti-sense MSMS UPN47_class_I_Rep_3 4 623.7255249023438 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.73 1 107.25 106.75 107.75 3.5205 0 0 0 0.53105 1 25444 25444 1.6526 0 1 + 15191 26761 9771 9777 18528 18528 0.15192307121606063 IYANAKRQL 9 Unmodified _IYANAKRQL_ 0 0 0 REV__L1PA16_dup10910|chr12:93491626-93492512:-|1.1288299223814038|0.2938197343790219|1.94|151.0|5|1|sense REV__L1PA16_dup10910|chr12:93491626-93492512:-|1.1288299223814038|0.2938197343790219|1.94|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 538.8150024414062 2 538.81419 1075.61383 0.58945 0.0003176 -0.2866 -0.00015442 0.30285 0.00016318 538.814020890326 55.533 0.82462 59.089 58.64 59.465 3.5559 89 50 2 0 0 0 0.23311 1 11756 11756 18.135 0 1 340320 + 15192 29320 9772 9778 18529 18529 0.07904540462777732 IYANAKRQL 9 Unmodified _IYANAKRQL_ 0 0 0 REV__L1PA16_dup10910|chr12:93491626-93492512:-|1.1288299223814038|0.2938197343790219|1.94|151.0|5|1|sense REV__L1PA16_dup10910|chr12:93491626-93492512:-|1.1288299223814038|0.2938197343790219|1.94|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 538.81419 1075.61383 0.44478 0.00023965 -0.10636 -5.731E-05 0.33841 0.00018234 538.8140628949074 55.517 0.84217 59.073 58.575 59.418 3.5554 0.0060042 7.0062E-05 NaN 18.135 99 51 3 NaN NaN NaN NaN 0 NaN NaN 0 419310 + 15193 29320 9772 9778 0.07904540462777732 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS UPN48_class_I_Rep_1 5 554.8055419921875 2 554.8055 1107.59645 0.54769 0.00030386 0.061764 3.4267E-05 0.60946 0.00033813 554.8055335907999 55.473 0.5831 58.982 58.694 59.277 3.5082 66 37 2 0 0 0 0.23293 2 11801 11801;11850 18.146 5.6148 1 102550 15194 4717 9773 9779 18530;18531 18530 0.04695200137143729 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS UPN48_class_I_Rep_2 6 554.8046875 2 554.8055 1107.59645 0.61968 0.0003438 -0.10121 -5.615E-05 0.51848 0.00028765 554.8053055046668 55.443 0.57382 58.999 58.692 59.266 3.5559 48 33 2 0 0 0 0.1249 5 11833 11786;11816;11833;11843;11885 29.082 16.55 1 152740 15195 4717 9773 9779 18532;18533;18534;18535;18536 18534 0.04695200137143729 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS UPN48_class_I_Rep_3 7 554.805908203125 2 554.8055 1107.59645 0.27454 0.00015231 0.26525 0.00014716 0.53979 0.00029948 554.8054854064702 55.358 0.42986 58.913 58.653 59.083 3.5554 42 23 2 0 0 0 0.23293 2 11694 11694;11741 18.146 5.6148 1 154070 15196 4717 9773 9779 18537;18538 18537 0.04695200137143729 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 485.7843322753906 2 485.784036 969.553519 0.1683 8.1759E-05 -0.22541 -0.0001095 -0.05711 -2.7743E-05 485.78386401924473 77.356 0.1842 80.878 80.723 80.907 3.5221 30 17 2 0 0 0 0.038568 1 18407 18407 53.576 17.531 1 118940 15197 2346 9774 9780 18539 18539 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 485.7842102050781 2 485.784036 969.553519 0.16783 8.1529E-05 0.12519 6.0813E-05 0.29302 0.00014234 485.78405061136067 77.483 0.45267 81.005 80.9 81.353 3.5221 48 40 2 0 0 0 0.019771 2 18444 18444;18484 63.563 25.412 1 159760 15198 2346 9774 9780 18540;18541 18540 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS UPN48_class_I_Rep_2 6 485.78424072265625 2 485.784036 969.553519 0.24473 0.00011888 -0.40373 -0.00019612 -0.159 -7.7239E-05 485.7839030507424 77.307 0.55206 80.918 80.639 81.191 3.6116 82 53 2 0 0 0 0.0088319 3 18301 18230;18301;18339 70.716 26.309 1 156610 15199 2346 9774 9780 18542;18543;18544 18543 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS UPN48_class_I_Rep_3 7 485.7841491699219 2 485.784036 969.553519 0.27459 0.00013339 -0.31294 -0.00015202 -0.038349 -1.863E-05 485.7838814890864 77.276 0.60897 80.877 80.63 81.239 3.6016 72 53 2 0 0 0 0.019771 4 18232 18191;18232;18282;18322 63.563 25.412 1 192670 15200 2346 9774 9780 18545;18546;18547;18548 18546 0.06752430079700389 IYAPQGLLL 9 Unmodified _IYAPQGLLL_ 0 0 0 ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7 ENST00000523128.1_1_8:41363387-41364622:+|nuORF ENST00000523128.1_1_8:41363387-41364622:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 494.2977600097656 2 494.29731 986.580068 0.19893 9.8331E-05 0.2102 0.0001039 0.40913 0.00020223 494.2972730615472 77.821 0.15413 81.343 81.198 81.353 3.5221 28 15 2 0 0 0 0.12799 1 18525 18525 28.487 3.813 1 137820 15201 3480 9775 9781 18549 18549 0.08624118971056305 IYAPQGLLL 9 Unmodified _IYAPQGLLL_ 0 0 0 ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7 ENST00000523128.1_1_8:41363387-41364622:+|nuORF ENST00000523128.1_1_8:41363387-41364622:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 494.2973327636719 2 494.29731 986.580068 0.19851 9.8123E-05 -0.013046 -6.4488E-06 0.18546 9.1674E-05 494.2971993310121 77.913 0.17305 81.435 81.362 81.535 3.5221 31 18 2 0 0 0 0.12799 1 18564 18564 28.487 3.813 1 100080 15202 3480 9775 9781 18550 18550 0.08624118971056305 IYAPQGLLL 9 Unmodified _IYAPQGLLL_ 0 0 0 ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7 ENST00000523128.1_1_8:41363387-41364622:+|nuORF ENST00000523128.1_1_8:41363387-41364622:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 494.2974548339844 2 494.29731 986.580068 0.2687 0.00013282 0.021093 1.0426E-05 0.2898 0.00014325 494.2972472393545 77.725 0.56461 81.348 81.069 81.633 3.6222 82 55 2 0 0 0 0.12799 3 18359 18359;18397;18436 28.487 3.813 1 270020 15203 3480 9775 9781 18551;18552;18553 18551 0.08624118971056305 IYAPQGLLL 9 Unmodified _IYAPQGLLL_ 0 0 0 ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7 ENST00000523128.1_1_8:41363387-41364622:+|nuORF ENST00000523128.1_1_8:41363387-41364622:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 494.2971496582031 2 494.29731 986.580068 0.28957 0.00014314 -0.16653 -8.2315E-05 0.12304 6.082E-05 494.2971803366688 77.694 0.65324 81.295 81.003 81.656 3.6016 107 66 2 0 0 0 0.12799 3 18313 18313;18348;18386 28.487 3.813 1 200920 15204 3480 9775 9781 18554;18555;18556 18554 0.08624118971056305 IYAPQGLLL 9 Unmodified _IYAPQGLLL_ 0 0 0 ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7 ENST00000523128.1_1_8:41363387-41364622:+|nuORF ENST00000523128.1_1_8:41363387-41364622:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 494.29731 986.580068 0.312 0.00015422 -0.1394 -6.8905E-05 0.1726 8.5314E-05 494.29713824187854 78.342 0.57613 81.685 81.447 82.023 3.3428 0.078219 -0.00013659 NaN 28.487 108 63 2 NaN NaN NaN NaN 0 NaN NaN 0 213560 15205 3480 9775 9781 0.08624118971056305 IYARAYFWA 9 Unmodified _IYARAYFWA_ 0 0 0 L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|30|2|anti-sense L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|30|2|anti-sense L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|30|2|anti-sense MSMS UPN48_class_I_Rep_2 6 580.800048828125 2 580.798009 1159.58147 NaN NaN NaN NaN NaN NaN NaN 61.56 1 65.034 64.534 65.534 3.4738 0 0 0 0.38478 1 13685 13685 4.3292 0.73274 1 15206 8892 9776 9782 18557 18557 0.008057530597852747 IYASVMEYF 9 Oxidation (M) _IYASVM(Oxidation (M))EYF_ IYASVM(1)EYF IYASVM(64)EYF 0 0 1 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS UPN48_class_I_Rep_1 5 569.759765625 2 569.759901 1137.50525 0.44729 0.00025485 -0.11879 -6.768E-05 0.32851 0.00018717 569.7597607987339 69.586 0.61611 73.041 72.767 73.383 3.4548 73 43 2 0 0 0 0.018707 2 16143 16143;16182 64.236 11.968 1 251490 15207 4239 9777 9783 18558;18559 18558 137 -0.05800431622492397 IYASVMEYF 9 Oxidation (M) _IYASVM(Oxidation (M))EYF_ IYASVM(1)EYF IYASVM(85)EYF 0 0 1 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-SECPEP UPN48_class_I_Rep_1 5 570.310546875 2 569.759901 1137.50525 0.44836 0.00025546 0.42111 0.00023993 0.86947 0.00049539 569.7599716165017 69.075 0.64046 72.53 72.162 72.803 3.4548 104 47 3 0 0 0 5.0465E-05 1 15989 15989 85.357 23.999 1 239680 15208 4239 9777 9783 18560 18560 137 -0.05800431622492397 IYASVMEYF 9 Oxidation (M) _IYASVM(Oxidation (M))EYF_ IYASVM(1)EYF IYASVM(74)EYF 0 0 1 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MSMS UPN48_class_I_Rep_2 6 569.7601318359375 2 569.759901 1137.50525 NaN NaN NaN NaN NaN NaN NaN 69.395 1 72.917 72.417 73.417 3.5216 0 0 0 1.7981E-08 1 16074 16074 74.423 22.154 1 15209 4239 9777 9783 18561 18561 137 -0.05800431622492397 IYASVMEYF 9 Oxidation (M) _IYASVM(Oxidation (M))EYF_ IYASVM(1)EYF IYASVM(71)EYF 0 0 1 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MSMS UPN48_class_I_Rep_2 6 569.759765625 2 569.759901 1137.50525 NaN NaN NaN NaN NaN NaN NaN 69.528 1 73.049 72.549 73.549 3.5216 0 0 0 1.1217E-06 1 16112 16112 71.134 18.865 1 15210 4239 9777 9783 18562 18562 137 -0.05800431622492397 IYASVMEYF 9 Oxidation (M) _IYASVM(Oxidation (M))EYF_ IYASVM(1)EYF IYASVM(93)EYF 0 0 1 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS UPN48_class_I_Rep_3 7 569.759521484375 2 569.759901 1137.50525 0.521 0.00029684 -0.20774 -0.00011836 0.31326 0.00017848 569.7597582436722 69.396 0.68253 72.909 72.611 73.293 3.5128 123 53 3 0 0 0 0.005134 3 16012 15935;15973;16012 108 46.64 1 222180 15211 4239 9777 9783 18563;18564;18565 18565 137 -0.05800431622492397 IYAYFPFH 8 Unmodified _IYAYFPFH_ 0 0 0 Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|57|3|anti-sense Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|57|3|anti-sense Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|57|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.260498046875 2 529.260728 1056.5069 NaN NaN NaN NaN NaN NaN NaN 30.124 1 33.869 33.369 34.369 3.7449 0 0 0 0.40738 1 4882 4882 0.79363 0 1 15212 462 9778 9784 18566 18566 -0.019090097515800153 IYCFPLHICP 10 Unmodified _IYCFPLHICP_ 0 0 0 REV__L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|39|3|anti-sense REV__L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|39|3|anti-sense MSMS UPN48_class_I_Rep_3 7 603.2937622070312 2 603.29593 1204.57731 NaN NaN NaN NaN NaN NaN NaN 54.3 1 57.87 57.37 58.37 3.5694 0 0 0 0.53105 1 11402 11402 1.8442 0.19162 1 + 15213 28121 9779 9785 18567 18567 -0.0167979574976016 IYCWWESK 8 Unmodified _IYCWWESK_ 0 0 0 L1MC2_dup4358|chr11:117059567-117060314:+|7.820241062526265|0.0228698278804533|8.42|151.0|15|2|sense L1MC2_dup4358|chr11:117059567-117060314:+|7.820241062526265|0.0228698278804533|8.42|151.0|15|2|sense L1MC2_dup4358|chr11:117059567-117060314:+|7.820241062526265|0.0228698278804533|8.42|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 557.7545776367188 2 557.754953 1113.49535 NaN NaN NaN NaN NaN NaN NaN 33.212 1 36.91 36.41 37.41 3.6983 0 0 0 0.40738 1 5820 5820 0.79363 0 1 15214 11256 9780 9786 18568 18568 -0.056855748372299786 IYDEATWLHD 10 Unmodified _IYDEATWLHD_ 0 0 0 ENSG00000268964|ENST00000601417|ERVV-2 ENSG00000268964|ENST00000601417|ERVV-2 ENSG00000268964|ENST00000601417|ERVV-2 MSMS UPN47_class_I_Rep_3 4 631.7889404296875 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 49.219 1 52.453 51.953 52.953 3.2345 0 0 0 0.53105 1 10770 10770 6.2058 0.47393 1 15215 5807 9781 9787 18569 18569 -0.05880087461491712 IYDKFIAQL 9 Unmodified _IYDKFIAQL_ 0 0 0 nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 MULTI-MSMS UPN48_class_I_Rep_1 5 555.8133544921875 2 555.813325 1109.6121 0.60884 0.0003384 -0.21497 -0.00011949 0.39386 0.00021892 555.8131258796085 63.581 0.70411 67.039 66.686 67.39 3.4578 94 57 2 0 0 0 0.052941 3 14321 14245;14321;14409 47.732 14.946 1 225310 15216 3887 9782 9788 18570;18571;18572 18571 0.061674866541807205 IYDKFIAQL 9 Unmodified _IYDKFIAQL_ 0 0 0 nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 MULTI-MSMS UPN48_class_I_Rep_2 6 555.8133544921875 2 555.813325 1109.6121 0.53943 0.00029982 0.037274 2.0717E-05 0.57671 0.00032054 555.8132273685504 63.453 0.67855 66.927 66.607 67.285 3.4738 79 56 2 0 0 0 0.0061843 2 14238 14238;14277 75.571 35.621 1 336350 15217 3887 9782 9788 18573;18574 18573 0.061674866541807205 IYDKFIAQL 9 Unmodified _IYDKFIAQL_ 0 0 0 nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.8136596679688 2 555.813325 1109.6121 0.41817 0.00023242 -0.15932 -8.8553E-05 0.25885 0.00014387 555.8132435088888 63.273 0.68262 66.782 66.445 67.128 3.5091 67 54 2 0 0 0 0.026395 5 14153 14064;14111;14153;14190;14227 59.368 11.62 1 381320 15218 3887 9782 9788 18575;18576;18577;18578;18579 18577 0.061674866541807205 IYDLIERIED 10 Unmodified _IYDLIERIED_ 0 0 0 nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;AGAP3|p.N411Rfs*8|1|0.5|ENSG00000133612|chr7:151134412-151134413|-/G|frameshift_variant;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3 nc|ENSG00000133612|Q96P47-3|AGAP3 nc|ENSG00000133612|Q96P47-3|AGAP3 MULTI-MSMS UPN48_class_I_Rep_1 5 639.8324584960938 2 639.832443 1277.65033 0.55176 0.00035303 -0.5569 -0.00035633 -0.0051442 -3.2915E-06 639.8318445388558 64.385 0.35839 67.839 67.594 67.952 3.4541 47 28 2 0 0 0 0.55448 1 14535 14535 4.897 4.897 1 169160 15219 2 9783 9789 18580 18580 0.02261327778182931 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS UPN48_class_I_Rep_1 5 533.7858276367188 2 533.2844 1064.55425 0.35542 0.00018954 0.1383 7.3752E-05 0.49372 0.00026329 533.28449837763 81.26 0.59288 84.823 84.51 85.103 3.5624 131 71 2 0 0 0 0.074399 3 19348 19319;19348;19378 39.95 13.066 1 526960 15220 5395 9784 9790 18581;18582;18583 18582 0.024552247287601858 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS UPN48_class_I_Rep_3 7 533.2844848632812 2 533.2844 1064.55425 0.55956 0.00029841 -0.045598 -2.4317E-05 0.51396 0.00027409 533.2843933488631 81.288 0.287 84.973 84.885 85.172 3.685 59 37 3 0 0 0 0.279 1 19230 19230 15.248 0.41021 1 229630 15221 5395 9784 9790 18584 18584 0.024552247287601858 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 533.2844 1064.55425 0.43299 0.00023091 0.016658 8.8833E-06 0.44965 0.00023979 533.2844097454624 81.248 0.4286 84.904 84.643 85.072 3.6567 -0.034453 2.4688E-05 NaN 15.248 90 54 2 NaN NaN NaN NaN 0 NaN NaN 0 574480 15222 5395 9784 9790 0.024552247287601858 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 533.2844 1064.55425 0.43312 0.00023097 0.36888 0.00019672 0.80199 0.00042769 533.284749470165 80.963 0.094368 84.619 84.549 84.643 3.6567 -0.089696 0.00025175 NaN 39.95 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 138550 15223 5395 9784 9790 0.024552247287601858 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 533.2844 1064.55425 0.55956 0.00029841 -0.045598 -2.4317E-05 0.51396 0.00027409 533.2843933488631 81.288 0.287 84.973 84.885 85.172 3.685 0.034453 -4.1711E-05 NaN 15.248 59 37 3 NaN NaN NaN NaN 0 NaN NaN 0 229630 15224 5395 9784 9790 0.024552247287601858 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 533.2844 1064.55425 0.55949 0.00029837 -0.27692 -0.00014768 0.28257 0.00015069 533.2843926217759 81.022 0.11274 84.685 84.615 84.727 3.6635 -0.023724 -0.00043703 NaN 39.95 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 249450 15225 5395 9784 9790 0.024552247287601858 IYDRLQRI 8 Unmodified _IYDRLQRI_ 0 0 0 ENSG00000205085|ENST00000682356|GARIN1A;nc|ENSG00000205085|Q6NXP2|GARIN1A ENSG00000205085|ENST00000682356|GARIN1A ENSG00000205085|ENST00000682356|GARIN1A MULTI-MSMS UPN48_class_I_Rep_1 5 538.8140869140625 2 538.81419 1075.61383 0.42755 0.00023037 -0.1569 -8.4537E-05 0.27066 0.00014583 538.814123603774 55.53 0.78532 59.038 58.706 59.491 3.5082 103 52 3 0 0 0 0.82752 1 11835 11835 30.637 2.1497 1 303210 15226 5550 9785 9791 18585 18585 0.07904540462777732 IYDSLYLNY 9 Unmodified _IYDSLYLNY_ 0 0 0 REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|74|1|anti-sense REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.7876586914062 2 582.284597 1162.55464 0.39386 0.00022934 -0.15771 -9.1831E-05 0.23615 0.00013751 582.2844546655886 77.145 0.74579 80.56 80.338 81.084 3.4149 119 65 2 0 0 0 0.43153 1 19265 19265 6.2058 0 1 271470 + 15227 30954 9786 9792 18586 18586 -0.02013400342048044 IYDSLYLNY 9 Unmodified _IYDSLYLNY_ 0 0 0 REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|74|1|anti-sense REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.2853393554688 2 582.284597 1162.55464 0.47685 0.00027766 -0.069501 -4.047E-05 0.40735 0.00023719 582.2844147858862 77.355 0.70198 80.686 80.433 81.135 3.3315 164 73 3 0 0 0 0.36392 2 19280 19119;19280 10.074 0 1 214690 + 15228 30954 9786 9792 18587;18588 18588 -0.02013400342048044 IYDSLYLNY 9 Unmodified _IYDSLYLNY_ 0 0 0 REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|74|1|anti-sense REV__LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 582.2825927734375 2 582.284597 1162.55464 0.46555 0.00027108 -0.091642 -5.3362E-05 0.37391 0.00021772 582.2844435168562 77.521 0.76833 80.79 80.394 81.162 3.269 169 79 3 0 0 0 0.43153 2 19384 19384;19388 6.2058 0 1 275670 + 15229 30954 9786 9792 18589;18590 18589 -0.02013400342048044 IYDVMLVF 8 Unmodified _IYDVMLVF_ 0 0 0 MER113_dup1972|chr11:35187403-35187836:-|1.218382425201623|0.0698086833803247|4.13|151.0|10|2|sense MER113_dup1972|chr11:35187403-35187836:-|1.218382425201623|0.0698086833803247|4.13|151.0|10|2|sense MER113_dup1972|chr11:35187403-35187836:-|1.218382425201623|0.0698086833803247|4.13|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 500.2660827636719 2 500.264622 998.514691 NaN NaN NaN NaN NaN NaN NaN 35.649 1 39.06 38.56 39.56 3.4114 0 0 0 0.40738 1 6597 6597 0.79363 0 1 15230 15771 9787 9793 18591 18591 0.015373814536928876 IYEAIYHGVP 10 Unmodified _IYEAIYHGVP_ 0 0 0 ENSG00000135220|ENST00000251566|UGT2A3;nc|ENSG00000271271|P0DTE5-2|UGT2A2;nc|ENSG00000173610|P0DTE4-1|UGT2A1;ENSG00000173610|ENST00000286604|UGT2A1;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1 ENSG00000135220|ENST00000251566|UGT2A3 ENSG00000135220|ENST00000251566|UGT2A3 MULTI-MSMS UPN48_class_I_Rep_2 6 581.3001098632812 2 581.300581 1160.58661 0.47216 0.00027447 0.02376 1.3811E-05 0.49592 0.00028828 581.3004989082207 70.455 0.82868 73.99 73.582 74.411 3.5359 261 87 4 0 0 0 0.50391 1 16282 16282 11.64 3.7301 1 1581400 15231 2888 9788 9794 18592 18592 0.012740121317619924 IYEEFLAAF 9 Unmodified _IYEEFLAAF_ 0 0 0 ENST00000491827.1_1_3:142733158-142735829:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP ENST00000491827.1_1_3:142733158-142735829:+|nuORF ENST00000491827.1_1_3:142733158-142735829:+|nuORF MSMS UPN48_class_I_Rep_1 5 551.7761840820312 2 551.776408 1101.53826 NaN NaN NaN NaN NaN NaN NaN 88.277 1 91.9 91.4 92.4 3.6229 0 0 0 0.081393 1 21179 21179 28.487 13.649 1 15232 4033 9789 9795 18593 18593 -0.008444815081702473 IYEGKKKNF 9 Unmodified _IYEGKKKNF_ 0 0 0 ENST00000513374.1_1_5:118729129-118729240:+|nuORF ENST00000513374.1_1_5:118729129-118729240:+|nuORF ENST00000513374.1_1_5:118729129-118729240:+|nuORF MSMS UPN48_class_I_Rep_2 6 563.8173217773438 2 563.816399 1125.61824 NaN NaN NaN NaN NaN NaN NaN 50.785 1 54.453 53.953 54.953 3.6679 0 0 0 0.38478 1 10402 10402 4.3292 0 1 15233 7195 9790 9796 18594 18594 0.060460048857066795 IYEGKKKNF 9 Unmodified _IYEGKKKNF_ 0 0 0 ENST00000513374.1_1_5:118729129-118729240:+|nuORF ENST00000513374.1_1_5:118729129-118729240:+|nuORF ENST00000513374.1_1_5:118729129-118729240:+|nuORF MSMS UPN48_class_I_Rep_3 7 563.8177490234375 2 563.816399 1125.61824 NaN NaN NaN NaN NaN NaN NaN 50.931 1 54.542 54.042 55.042 3.6105 0 0 0 0.35339 1 10385 10385 7.9102 2.1497 1 15234 7195 9790 9796 18595 18595 0.060460048857066795 IYELQREF 8 Unmodified _IYELQREF_ 0 0 0 ENSG00000218819|ENST00000405799|TDRD15 ENSG00000218819|ENST00000405799|TDRD15 ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS UPN48_class_I_Rep_3 7 549.2852783203125 2 549.284931 1096.55531 0.3479 0.0001911 -0.049095 -2.6967E-05 0.29881 0.00016413 549.2848882454424 44.771 0.5603 48.408 48.239 48.8 3.6372 57 37 2 0 0 0 0.82752 1 8570 8570 7.9102 7.9102 1 93595 15235 5641 9791 9797 18596 18596 0.010894390976545765 IYENPAIYY 9 Unmodified _IYENPAIYY_ 0 0 0 Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|11|2|sense Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|11|2|sense Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 573.277099609375 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 18.552 1 21.907 21.407 22.407 3.3545 0 0 0 0.39428 1 1566 1566 2.0598 0.21551 1 15236 498 9792 9798 18597 18597 -0.022413829964989418 IYENQLLWY 9 Unmodified _IYENQLLWY_ 0 0 0 L1MB1_dup2666|chr7:156870772-156872077:+|1.073853962647837|0.0274484709665174|5.29|151.0|27|2|sense L1MB1_dup2666|chr7:156870772-156872077:+|1.073853962647837|0.0274484709665174|5.29|151.0|27|2|sense L1MB1_dup2666|chr7:156870772-156872077:+|1.073853962647837|0.0274484709665174|5.29|151.0|27|2|sense MSMS UPN47_class_I_Rep_2 3 621.3130493164062 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 65.204 1 68.459 67.959 68.959 3.2556 0 0 0 0.39518 1 15585 15585 1.8442 0 1 15237 10173 9793 9799 18598 18598 0.0021428130326057726 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_1 5 595.3001098632812 2 595.30005 1188.58555 0.41223 0.0002454 0.045238 2.693E-05 0.45746 0.00027233 595.2999197050174 97.279 0.16542 100.89 100.77 100.94 3.6088 45 19 3 0 0 0 0.052902 1 23460 23460 47.749 24.6 1 497220 15238 1300 9794 9800 18599 18599 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_1 5 595.8019409179688 2 595.30005 1188.58555 0.41227 0.00024543 0.19281 0.00011478 0.60508 0.0003602 595.2999382261837 97.442 0.17307 101.05 100.92 101.1 3.6088 62 21 4 0 0 0 0.074399 1 23492 23492 39.95 39.95 1 845690 15239 1300 9794 9800 18600 18600 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_1 5 595.3001708984375 2 595.30005 1188.58555 0.41229 0.00024544 0.13511 8.0431E-05 0.5474 0.00032587 595.3000103764219 97.587 0.45609 101.2 101.08 101.54 3.6088 130 58 4 0 0 0 0.032038 2 23526 23526;23562 56.177 33.029 1 845620 15240 1300 9794 9800 18601;18602 18601 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_2 6 595.3001098632812 2 595.30005 1188.58555 0.48454 0.00028844 -0.12963 -7.7168E-05 0.35491 0.00021128 595.2998685509953 97.091 0.14306 100.87 100.76 100.9 3.779 35 18 2 0 0 0 0.01718 1 23075 23075 65.235 40.561 1 431950 15241 1300 9794 9800 18603 18603 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_2 6 595.3004760742188 2 595.30005 1188.58555 0.48454 0.00028844 -0.15024 -8.9439E-05 0.33429 0.000199 595.2998559082931 97.216 0.17165 101 100.9 101.08 3.779 43 23 2 0 0 0 0.10568 1 23106 23106 32.786 32.786 1 321960 15242 1300 9794 9800 18604 18604 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_2 6 595.3006591796875 2 595.30005 1188.58555 0.48465 0.00028852 0.083801 4.9887E-05 0.56846 0.0003384 595.2999237211059 97.399 0.28875 101.18 100.93 101.22 3.779 73 40 3 0 0 0 0.074399 1 23135 23135 39.95 24.103 1 447210 15243 1300 9794 9800 18605 18605 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN48_class_I_Rep_2 6 595.8027954101562 2 595.30005 1188.58555 0.48459 0.00028847 -0.21911 -0.00013044 0.26548 0.00015804 595.8015986942758 97.729 0.09671 101.51 101.41 101.51 3.779 18 13 2 0 0 0 0.17897 1 23211 23211 22.736 5.794 1 179850 15244 1300 9794 9800 18606 18606 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-SECPEP UPN48_class_I_Rep_2 6 595.8021850585938 2 595.30005 1188.58555 0.48432 0.00028832 -0.27795 -0.00016546 0.20637 0.00012285 595.2998733989725 97.498 0.23792 101.28 101.21 101.45 3.779 45 32 2 0 0 0 0.091581 1 23166 23166 22.736 11.096 1 2040700 15245 1300 9794 9800 18607 18607 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS UPN48_class_I_Rep_3 7 595.300048828125 2 595.30005 1188.58555 NaN NaN NaN NaN NaN NaN NaN 97.06 1 100.97 100.47 101.47 3.9084 0 0 0 0.04168 1 23007 23007 39.95 16.801 1 15246 1300 9794 9800 18608 18608 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS UPN48_class_I_Rep_3 7 595.30029296875 2 595.30005 1188.58555 NaN NaN NaN NaN NaN NaN NaN 97.183 1 101.09 100.59 101.59 3.9084 0 0 0 0.00086493 1 23037 23037 62.573 20.733 1 15247 1300 9794 9800 18609 18609 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 595.30005 1188.58555 0.41211 0.00024533 -0.36427 -0.00021685 0.047836 2.8477E-05 595.2995336806432 98.081 0.1194 101.69 101.57 101.69 3.6065 0.089886 -6.6056E-05 NaN 22.736 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 236460 15248 1300 9794 9800 -0.0012020223716717737 IYEQVFAKL 9 Unmodified _IYEQVFAKL_ 0 0 0 ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|6|intron;ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|1|intron;ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF;ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|3|intron;ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|7|intron;ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|5|intron;ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|2|intron ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|6|intron ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|6|intron MULTI-MSMS UPN48_class_I_Rep_2 6 555.8140869140625 2 555.813325 1109.6121 0.5653 0.0003142 -0.084517 -4.6976E-05 0.48078 0.00026723 555.8130983572045 60.615 0.52851 64.094 63.73 64.258 3.4785 62 48 2 0 0 0 0.079935 1 13390 13390 38.615 5.1698 1 140150 15249 2293 9795 9801 18610 18610 0.061674866541807205 IYEWCCCTF 9 Unmodified _IYEWCCCTF_ 0 0 0 REV__L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|35|2|anti-sense REV__L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|35|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.22021484375 2 584.219031 1166.42351 0.56617 0.00033076 1.4388 0.00084055 2.0049 0.0011713 584.2199576001018 61.658 0.28144 65.126 64.944 65.225 3.4678 31 25 2 0 0 0 0.41259 1 13696 13696 7.2892 2.0586 1 167880 + 15250 27907 9796 9802 18611 18611 -0.1530457357762316 IYEWCCCTF 9 Unmodified _IYEWCCCTF_ 0 0 0 REV__L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|35|2|anti-sense REV__L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|35|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 584.219031 1166.42351 0.56617 0.00033076 1.4388 0.00084055 2.0049 0.0011713 584.2199576001018 61.658 0.28144 65.126 64.944 65.225 3.4678 0.079113 -0.0003796 NaN 7.2892 31 25 2 NaN NaN NaN NaN 0 NaN NaN 0 167880 + 15251 27907 9796 9802 -0.1530457357762316 IYFAKHWL 8 Unmodified _IYFAKHWL_ 0 0 0 HERVL-int_dup1844|chr12:46732133-46733795:-|1.2879324847562292|0.0110653116725813|6.86|151.0|69|1|anti-sense HERVL-int_dup1844|chr12:46732133-46733795:-|1.2879324847562292|0.0110653116725813|6.86|151.0|69|1|anti-sense HERVL-int_dup1844|chr12:46732133-46733795:-|1.2879324847562292|0.0110653116725813|6.86|151.0|69|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 539.7818603515625 2 539.297645 1076.58074 0.42838 0.00023102 1.5785 0.00085128 2.0069 0.0010823 539.7989905714617 55.113 0.62415 58.668 58.289 58.913 3.5554 69 34 3 0 0 0 0.72333 1 11598 11598 14.582 0.67564 1 125530 15252 8355 9797 9803 18612 18612 0.04550958410732164 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN48_class_I_Rep_1 5 588.7718505859375 2 588.771657 1175.52876 0.57632 0.00033932 -0.050058 -2.9473E-05 0.52626 0.00030985 588.7714673370109 61.08 0.6103 64.554 64.316 64.926 3.4737 114 54 3 0 0 0 0.041849 3 13571 13536;13571;13614 52.268 25.385 1 236020 15253 2039 9798 9804 18613;18614;18615 18614 -0.05198249793670584 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN48_class_I_Rep_2 6 588.771240234375 2 588.771657 1175.52876 0.54574 0.00032132 -0.013106 -7.7162E-06 0.53263 0.0003136 588.7715720915029 61.04 0.59016 64.519 64.205 64.795 3.4785 93 52 2 0 0 0 0.006343 5 13537 13456;13470;13498;13537;13590 74.929 40.827 1 196030 15254 2039 9798 9804 18616;18617;18618;18619;18620 18619 -0.05198249793670584 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN48_class_I_Rep_3 7 588.7725830078125 2 588.771657 1175.52876 0.50714 0.00029859 -0.2073 -0.00012205 0.29984 0.00017654 588.7715182053446 60.855 0.61003 64.368 64.163 64.774 3.5129 108 57 3 0 0 0 0.023254 4 13393 13356;13393;13432;13469 61.357 27.255 1 207230 15255 2039 9798 9804 18621;18622;18623;18624 18622 -0.05198249793670584 IYFHCFYSSQ 10 Unmodified _IYFHCFYSSQ_ 0 0 0 REV__Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|102|3|anti-sense REV__Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|102|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 647.78271484375 2 647.781699 1293.54884 0.235 0.00015223 1.7813 0.0011539 2.0163 0.0013061 647.7828288333624 46.953 0.49628 50.648 50.42 50.916 3.6951 44 28 2 0 0 0 0.56033 2 9990 9990;10036 3.5965 1.5367 1 110840 + 15256 30764 9799 9805 18625;18626 18625 -0.08618822125367842 IYFHCFYSSQ 10 Unmodified _IYFHCFYSSQ_ 0 0 0 REV__Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|102|3|anti-sense REV__Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|102|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 647.7805786132812 2 647.781699 1293.54884 0.31039 0.00020106 2.287 0.0014815 2.5974 0.0016826 647.7832040285803 47.292 0.41069 50.643 50.416 50.826 3.3515 36 24 2 0 0 0 0.56333 1 10116 10116 1.4819 0.28856 1 86588 + 15257 30764 9799 9805 18627 18627 -0.08618822125367842 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 567.83740234375 2 567.837134 1133.65972 0.45981 0.0002611 -0.10789 -6.1265E-05 0.35192 0.00019983 567.836944839474 68.738 0.4922 72.193 71.917 72.409 3.4548 80 41 2 0 0 0 0.18929 1 15911 15911 21.747 4.8044 1 144700 15258 1211 9800 9806 18628 18628 0.09823185645018384 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 567.7767333984375 2 567.837134 1133.65972 0.45919 0.00026074 -0.22765 -0.00012927 0.23154 0.00013148 567.8372197676787 69.022 0.1587 72.476 72.425 72.583 3.4548 17 12 2 0 0 0 0.070541 1 15971 15971 28.487 11.545 1 84719 15259 1211 9800 9806 18629 18629 0.09823185645018384 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 567.8370361328125 2 567.837134 1133.65972 0.4922 0.00027949 0.019803 1.1245E-05 0.512 0.00029073 567.836993808453 68.609 0.4351 72.117 72.061 72.496 3.5083 48 30 3 0 0 0 0.12799 1 15844 15844 28.487 11.545 1 168120 15260 1211 9800 9806 18630 18630 0.09823185645018384 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 567.8370971679688 2 567.837134 1133.65972 0.51265 0.0002911 -0.15059 -8.5511E-05 0.36206 0.00020559 567.837102020034 68.574 0.52625 72.084 71.872 72.399 3.5094 66 40 2 0 0 0 0.12799 2 15709 15709;15749 28.487 11.545 1 207780 15261 1211 9800 9806 18631;18632 18631 0.09823185645018384 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 567.837134 1133.65972 0.49372 0.00028035 -0.25538 -0.00014502 0.23834 0.00013534 567.8368153825571 68.46 0.24646 71.968 71.815 72.061 3.5083 -0.027762 -5.8441E-05 NaN 21.747 49 25 3 NaN NaN NaN NaN 0 NaN NaN 0 137050 15262 1211 9800 9806 0.09823185645018384 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 567.837134 1133.65972 0.51082 0.00029006 -0.44359 -0.00025189 0.067229 3.8175E-05 567.8369339452756 68.317 0.18433 71.827 71.709 71.893 3.5094 -0.16914 -0.00027218 NaN 21.747 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 105130 15263 1211 9800 9806 0.09823185645018384 IYFKSINEV 9 Unmodified _IYFKSINEV_ 0 0 0 L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|38|2|anti-sense L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|38|2|anti-sense L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_2 6 556.802490234375 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.434 1 64.908 64.408 65.408 3.4738 0 0 0 0.38478 1 13646 13646 4.3292 0 1 15264 12069 9801 9807 18633 18633 0.040028962745282115 IYFLVGAKSF 10 Unmodified _IYFLVGAKSF_ 0 0 0 REV__L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|52|1|anti-sense REV__L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_2 6 572.8238525390625 2 572.823692 1143.63283 NaN NaN NaN NaN NaN NaN NaN 67.158 1 70.654 70.154 71.154 3.4964 0 0 0 0.53105 1 15399 15399 7.1017 0.37856 1 + 15265 26205 9802 9808 18634 18634 0.0667607703385329 IYFMNYDY 8 Unmodified _IYFMNYDY_ 0 0 0 REV__L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|71|3|sense REV__L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|71|3|sense MSMS UPN47_class_I_Rep_1 2 564.8007202148438 2 564.738968 1127.46338 NaN NaN NaN NaN NaN NaN NaN 112.52 1 116.09 115.59 116.59 3.572 0 0 0 0.40738 1 27742 27742 0.79363 0.10326 1 + 15266 25573 9803 9809 18635 18635 -0.09524987311010591 IYFMVVNDK 9 Unmodified _IYFMVVNDK_ 0 0 0 Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|163|3|anti-sense;Tigger2b_Pri_dup195|chr1:243428435-243429480:+|1.1721108775029017|0.054527740878493|4.43|151.0|50|1|anti-sense Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|163|3|anti-sense Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|163|3|anti-sense MSMS UPN46_class_I_Rep_3 1 564.7932739257812 2 564.791535 1127.56852 NaN NaN NaN NaN NaN NaN NaN 90.318 1 90.318 89.818 90.818 0 0 0 0 0.39326 1 21776 21776 2.3027 0.24298 1 15267 33288 9804 9810 18636 18636 0.00983553885407673 IYFNALVYY 9 Unmodified _IYFNALVYY_ 0 0 0 REV__AluSz_dup96299|chr19:48980384-48980689:+|1.0725113075523796|0.2458264538411848|2.13|151.0|16|1|anti-sense REV__AluSz_dup96299|chr19:48980384-48980689:+|1.0725113075523796|0.2458264538411848|2.13|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_1 2 583.2969970703125 2 583.30005 1164.58555 NaN NaN NaN NaN NaN NaN NaN 53.3 1 56.828 56.328 57.328 3.5278 0 0 0 0.35339 1 11930 11930 7.9102 1.7044 1 + 15268 17219 9805 9811 18637 18637 0.009837977628421868 IYFPYVLKI 9 Unmodified _IYFPYVLKI_ 0 0 0 ENSG00000188921|ENST00000495827|HACD4 ENSG00000188921|ENST00000495827|HACD4 ENSG00000188921|ENST00000495827|HACD4 MULTI-SECPEP UPN48_class_I_Rep_1 5 578.2882690429688 2 578.344261 1154.67397 0.42688 0.00024688 -1.3421 -0.0007762 -0.91523 -0.00052932 578.3433413589231 81.534 0.13696 85.097 85.031 85.168 3.5624 21 16 2 0 0 0 0.086155 1 19437 19437 23.148 5.0021 1 107750 15269 5265 9806 9812 18638 18638 0.10281838073319705 IYFSFDLPVL 10 Unmodified _IYFSFDLPVL_ 0 0 0 L1MEg_dup4692|chr5:39003774-39004464:-|1.4753659983463607|0.075591345780876|4.29|151.0|38|2|anti-sense L1MEg_dup4692|chr5:39003774-39004464:-|1.4753659983463607|0.075591345780876|4.29|151.0|38|2|anti-sense L1MEg_dup4692|chr5:39003774-39004464:-|1.4753659983463607|0.075591345780876|4.29|151.0|38|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 405.2999572753906 3 405.221631 1212.64306 -0.60297 -0.00024434 1.2839 0.00052026 0.68092 0.00027592 405.2220524763987 50.225 0.14156 53.568 53.458 53.599 3.3431 8 6 2 0 0 0 0.84575 1 10991 10991 1.9064 0 1 33852 15270 13389 9807 9813 18639 18639 0.04524639968417432 IYFSFDLPVL 10 Unmodified _IYFSFDLPVL_ 0 0 0 L1MEg_dup4692|chr5:39003774-39004464:-|1.4753659983463607|0.075591345780876|4.29|151.0|38|2|anti-sense L1MEg_dup4692|chr5:39003774-39004464:-|1.4753659983463607|0.075591345780876|4.29|151.0|38|2|anti-sense L1MEg_dup4692|chr5:39003774-39004464:-|1.4753659983463607|0.075591345780876|4.29|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_3 4 405.2215270996094 3 405.221631 1212.64306 NaN NaN NaN NaN NaN NaN NaN 50.057 1 53.283 52.783 53.783 3.2262 0 0 0 0.53105 1 11025 11025 1.9064 0 1 15271 13389 9807 9813 18640 18640 0.04524639968417432 IYFSTAGIL 9 Unmodified _IYFSTAGIL_ 0 0 0 REV__L1MB2_dup6046|chr12:66167417-66167938:+|2.1931615774103848|0.2811368365882362|2.96|151.0|33|3|anti-sense REV__L1MB2_dup6046|chr12:66167417-66167938:+|2.1931615774103848|0.2811368365882362|2.96|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 492.7718811035156 2 492.773668 983.532783 NaN NaN NaN NaN NaN NaN NaN 63.808 1 67.064 66.564 67.564 3.2556 0 0 0 0.29868 1 15159 15159 10.824 1.4408 1 + 15272 25758 9808 9814 18641 18641 0.04035839700065935 IYFTRVQP 8 Unmodified _IYFTRVQP_ 0 0 0 REV__L1MC4_dup21471|chr17:16774238-16774670:-|1.1629421245973062|0.4256002523535547|1.45|137.0|30|3|anti-sense REV__L1MC4_dup21471|chr17:16774238-16774670:-|1.1629421245973062|0.4256002523535547|1.45|137.0|30|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 512.786865234375 2 512.284734 1022.55492 0.19224 9.8484E-05 0.25754 0.00013194 0.44979 0.00023042 512.284879633353 55.452 0.56872 58.762 58.551 59.119 3.3102 50 31 2 0 0 0 0.72333 1 12713 12713 2.3027 0 1 100450 + 15273 26876 9809 9815 18642 18642 0.044540641684761795 IYFTWIPLD 9 Unmodified _IYFTWIPLD_ 0 0 0 REV__L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|32|1|anti-sense REV__L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_2 6 584.30908203125 2 584.307875 1166.6012 NaN NaN NaN NaN NaN NaN NaN 62.641 1 66.115 65.615 66.615 3.4738 0 0 0 0.38478 1 14017 14017 4.3292 0 1 + 15274 26262 9810 9816 18643 18643 0.024560842799019156 IYGEKTYAF 9 Unmodified _IYGEKTYAF_ 0 0 0 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 MULTI-MSMS UPN48_class_I_Rep_1 5 546.2737426757812 2 546.274032 1090.53351 0.43302 0.00023655 -0.21624 -0.00011813 0.21677 0.00011842 546.2738309455822 46.667 0.5728 50.187 49.875 50.448 3.5192 52 36 2 0 0 0 0.17897 1 9110 9110 22.736 7.898 1 115900 15275 5715 9811 9817 18644 18644 -0.008133656509244247 IYGEKTYAF 9 Unmodified _IYGEKTYAF_ 0 0 0 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 MULTI-MSMS UPN48_class_I_Rep_2 6 546.2735595703125 2 546.274032 1090.53351 0.39444 0.00021547 0.010897 5.9527E-06 0.40534 0.00022143 546.273996574167 46.266 0.59306 50.015 49.841 50.434 3.7494 59 37 2 0 0 0 0.32682 1 9057 9057 12.241 0.60036 1 147080 15276 5715 9811 9817 18645 18645 -0.008133656509244247 IYGEKTYAF 9 Unmodified _IYGEKTYAF_ 0 0 0 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 MULTI-MSMS UPN48_class_I_Rep_3 7 546.2738037109375 2 546.274032 1090.53351 0.38983 0.00021295 -0.015407 -8.4167E-06 0.37442 0.00020454 546.2740697391589 46.518 0.56422 50.154 49.884 50.448 3.6363 46 33 2 0 0 0 0.12096 2 9013 9013;9053 29.841 12.728 1 147760 15277 5715 9811 9817 18646;18647 18646 -0.008133656509244247 IYGLLKNPF 9 Unmodified _IYGLLKNPF_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS UPN48_class_I_Rep_1 5 532.8110961914062 2 532.810585 1063.60662 0.39859 0.00021237 -0.21106 -0.00011246 0.18753 9.9918E-05 532.8105624535017 67.398 0.54897 70.85 70.581 71.129 3.4516 54 37 3 0 0 0 0.038568 2 15482 15482;15550 53.576 21.459 1 206230 15278 2985 9812 9818 18648;18649 18648 0.07735807862354704 IYGLLKNPF 9 Unmodified _IYGLLKNPF_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS UPN48_class_I_Rep_2 6 532.8104248046875 2 532.810585 1063.60662 0.44874 0.0002391 -0.055514 -2.9578E-05 0.39323 0.00020952 532.8105212179515 67.361 0.6613 70.857 70.441 71.102 3.4964 68 49 2 0 0 0 0.013968 1 15449 15449 67.344 35.227 1 180690 15279 2985 9812 9818 18650 18650 0.07735807862354704 IYGLLKNPF 9 Unmodified _IYGLLKNPF_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS UPN48_class_I_Rep_3 7 532.810546875 2 532.810585 1063.60662 0.56977 0.00030358 -0.20284 -0.00010807 0.36694 0.00019551 532.8104472484453 67.147 0.52263 70.655 70.471 70.994 3.5077 72 43 2 0 0 0 0.024782 1 15317 15317 60.39 28.273 1 127320 15280 2985 9812 9818 18651 18651 0.07735807862354704 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 545.2664794921875 2 545.266207 1088.51786 0.54359 0.0002964 0.033045 1.8018E-05 0.57663 0.00031442 545.2661098362495 64.376 0.96474 67.831 67.454 68.419 3.4548 224 76 4 0 0 0 0.00031896 6 14560 14485;14524;14560;14604;14647;14688 197.17 129.82 1 1683200 15281 2097 9813 9819 18652;18653;18654;18655;18656;18657 18654 -0.022856521679386788 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 545.2662963867188 2 545.266207 1088.51786 0.52221 0.00028474 0.033351 1.8185E-05 0.55556 0.00030293 545.2660994111435 64.206 1.1102 67.68 67.35 68.46 3.4743 236 81 4 0 0 0 0.00033249 8 14545 14427;14467;14506;14545;14582;14620;14676;14733 181.33 120.94 1 1892000 15282 2097 9813 9819 18658;18659;18660;18661;18662;18663;18664;18665 18661 -0.022856521679386788 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 545.266357421875 2 545.266207 1088.51786 0.50464 0.00027517 0.013617 7.4249E-06 0.51826 0.00028259 545.266084372681 64.139 0.95946 67.647 67.262 68.221 3.5083 254 82 4 0 0 0 0.00033249 6 14427 14311;14349;14390;14427;14463;14500 181.33 123.86 1 1487400 15283 2097 9813 9819 18666;18667;18668;18669;18670;18671 18669 -0.022856521679386788 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 545.266207 1088.51786 0.35392 0.00019298 0.075152 4.0978E-05 0.42907 0.00023396 545.2657913205524 64.94 0.064148 68.195 68.178 68.242 3.2556 0.35697 5.1944E-05 NaN 197.17 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 45346 15284 2097 9813 9819 -0.022856521679386788 IYHCDGDDD 9 Unmodified _IYHCDGDDD_ 0 0 0 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 MSMS UPN48_class_I_Rep_1 5 526.7503051757812 2 526.684921 1051.35529 NaN NaN NaN NaN NaN NaN NaN 118.12 1 121.74 121.24 122.24 3.6215 0 0 0 0.40038 1 28804 28804 0.6015 0.076735 1 15285 2855 9814 9820 18672 18672 -0.16833403632267618 IYHDKLGF 8 Unmodified _IYHDKLGF_ 0 0 0 L1MB3_dup6869|chr7:99018175-99018961:-|1.378611908493431|0.1734547114612778|2.99|151.0|11|2|sense L1MB3_dup6869|chr7:99018175-99018961:-|1.378611908493431|0.1734547114612778|2.99|151.0|11|2|sense L1MB3_dup6869|chr7:99018175-99018961:-|1.378611908493431|0.1734547114612778|2.99|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 496.7633056640625 2 496.763635 991.512717 NaN NaN NaN NaN NaN NaN NaN 51.636 1 55.159 54.659 55.659 3.5227 0 0 0 0.40659 1 10669 10669 1.8442 0 1 15286 10447 9815 9821 18673 18673 0.01662088760087954 IYHGGATDR 9 Unmodified _IYHGGATDR_ 0 0 0 REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|34|3|sense REV__L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 495.2414855957031 2 495.243598 988.472643 NaN NaN NaN NaN NaN NaN NaN 51.315 1 54.925 54.425 55.425 3.6105 0 0 0 0.3264 1 10503 10503 9.3474 0.75416 1 + 15287 29416 9816 9822 18674 18674 -0.02205457910486075 IYHGKQINK 9 Unmodified _IYHGKQINK_ 0 0 0 REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|66|2|sense REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 550.8157348632812 2 550.81419 1099.61383 NaN NaN NaN NaN NaN NaN NaN 39.852 1 43.357 42.857 43.857 3.5048 0 0 0 0.39428 1 7085 7085 2.0598 0 1 + 15288 25357 9817 9823 18675 18675 0.06800540462791105 IYHPDIQLL 9 Unmodified _IYHPDIQLL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN48_class_I_Rep_1 5 556.3114624023438 2 556.310949 1110.60735 0.58926 0.00032781 -0.32269 -0.00017952 0.26657 0.0001483 556.3107282230789 64.676 0.49593 68.131 67.827 68.323 3.4541 63 38 2 0 0 0 0.052902 3 14601 14601;14643;14686 47.749 11.622 1 264890 15289 2611 9818 9824 18676;18677;18678 18676 0.0564660251143323 IYHPDIQLL 9 Unmodified _IYHPDIQLL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MSMS UPN48_class_I_Rep_1 5 556.3121337890625 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 64.839 1 68.294 67.794 68.794 3.4541 0 0 0 0.10315 1 14709 14709 24.021 3.1494 1 15290 2611 9818 9824 18679 18679 0.0564660251143323 IYHPDIQLL 9 Unmodified _IYHPDIQLL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN48_class_I_Rep_3 7 556.3111572265625 2 556.310949 1110.60735 0.43009 0.00023926 -1.015 -0.00056463 -0.58487 -0.00032537 556.3107870467703 64.422 0.38647 67.931 67.703 68.09 3.5083 62 35 3 0 0 0 0.16559 2 14487 14487;14525 24.021 4.7636 1 242160 15291 2611 9818 9824 18680;18681 18680 0.0564660251143323 IYHPDIQLL 9 Unmodified _IYHPDIQLL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MSMS UPN48_class_I_Rep_3 7 556.310791015625 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 64.195 1 67.703 67.203 68.203 3.5083 0 0 0 0.10315 1 14413 14413 24.021 3.1494 1 15292 2611 9818 9824 18682 18682 0.0564660251143323 IYHPDIQLL 9 Unmodified _IYHPDIQLL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MSMS UPN48_class_I_Rep_3 7 556.3109741210938 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 64.313 1 67.821 67.321 68.321 3.5083 0 0 0 0.036836 1 14449 14449 41.84 1.3911 1 15293 2611 9818 9824 18683 18683 0.0564660251143323 IYHPTLVYI 9 Unmodified _IYHPTLVYI_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 559.8157348632812 2 559.815867 1117.61718 0.42774 0.00023946 -0.13962 -7.8161E-05 0.28812 0.0001613 559.8154933866767 82.984 0.21969 82.984 82.89 83.11 0 35 19 3 0 0 0 0.17468 1 19663 19663 23.148 1.4018 1 228670 15294 9996 9819 9825 18684 18684 0.06307790516802925 IYHPTLVYI 9 Unmodified _IYHPTLVYI_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.8159790039062 2 559.815867 1117.61718 0.40283 0.00022551 -0.090084 -5.043E-05 0.31275 0.00017508 559.8156786736389 75.994 1.0159 79.397 78.844 79.859 3.4034 220 94 3 0 0 0 0.17468 1 18821 18821 23.148 5.0134 1 272630 15295 9996 9819 9825 18685 18685 0.06307790516802925 IYHPTLVYI 9 Unmodified _IYHPTLVYI_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.8160400390625 2 559.815867 1117.61718 0.46427 0.00025991 -0.26431 -0.00014796 0.19997 0.00011194 559.8155677319573 76.066 0.80889 79.387 79.021 79.83 3.3216 150 80 3 0 0 0 0.25207 1 18797 18797 16.942 2.3606 1 344600 15296 9996 9819 9825 18686 18686 0.06307790516802925 IYHPTLVYI 9 Unmodified _IYHPTLVYI_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense MSMS UPN47_class_I_Rep_2 3 559.8157348632812 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 76.255 1 79.576 79.076 80.076 3.3216 0 0 0 0.1074 1 18869 18869 23.148 0.41214 1 15297 9996 9819 9825 18687 18687 0.06307790516802925 IYHPTLVYI 9 Unmodified _IYHPTLVYI_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 559.815867 1117.61718 0.42774 0.00023946 -0.13962 -7.8161E-05 0.28812 0.0001613 559.8154933866767 82.984 0.21969 82.984 82.89 83.11 0 0 0 NaN 23.148 35 19 3 NaN NaN NaN NaN 0 NaN NaN 0 228670 15298 9996 9819 9825 0.06307790516802925 IYHQSEQATY 10 Unmodified _IYHQSEQATY_ 0 0 0 L1PA4_dup4494|chr6:45281108-45287253:+|1.4954711006093628|0.0477896836891083|4.97|151.0|59|1|sense;L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|67|2|sense L1PA4_dup4494|chr6:45281108-45287253:+|1.4954711006093628|0.0477896836891083|4.97|151.0|59|1|sense L1PA4_dup4494|chr6:45281108-45287253:+|1.4954711006093628|0.0477896836891083|4.97|151.0|59|1|sense MSMS UPN47_class_I_Rep_1 2 620.2863159179688 2 620.28566 1238.55677 NaN NaN NaN NaN NaN NaN NaN 44.841 1 48.541 48.041 49.041 3.6999 0 0 0 0.53105 1 9362 9362 2.9952 0 1 15299 14353 9820 9826 18688 18688 -0.05296971604229839 IYHWHSHEQ 9 Unmodified _IYHWHSHEQ_ 0 0 0 REV__L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|38|2|sense REV__L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|38|2|sense MSMS UPN48_class_I_Rep_2 6 618.7828369140625 2 618.780879 1235.5472 NaN NaN NaN NaN NaN NaN NaN 113.25 1 116.92 116.42 117.42 3.6648 0 0 0 0.40038 1 27020 27020 0.6015 0 1 + 15300 30266 9821 9827 18689 18689 -0.061146950990860205 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN48_class_I_Rep_1 5 494.7660827636719 2 494.766178 987.517802 0.17822 8.8176E-05 0.22048 0.00010909 0.3987 0.00019726 494.7661591656863 50.749 0.73545 54.273 53.975 54.711 3.5246 137 46 4 0 0 0 0.0053953 6 10361 10319;10361;10398;10441;10482;10526 79.935 41.783 1 858420 15301 1706 9822 9828 18690;18691;18692;18693;18694;18695 18691 0.023543926227148404 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN48_class_I_Rep_2 6 494.7662353515625 2 494.766178 987.517802 0.25476 0.00012604 0.13792 6.8236E-05 0.39267 0.00019428 494.76612088710465 50.644 0.92455 54.312 53.894 54.819 3.6679 147 56 4 0 0 0 0.0048075 6 10347 10266;10307;10347;10385;10430;10472 93.763 46.842 1 799310 15302 1706 9822 9828 18696;18697;18698;18699;18700;18701 18698 0.023543926227148404 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN48_class_I_Rep_3 7 494.7662658691406 2 494.766178 987.517802 0.13522 6.6901E-05 0.24853 0.00012296 0.38375 0.00018987 494.76620039984476 50.723 0.81007 54.344 54.034 54.844 3.621 137 53 3 0 0 0 0.0048075 6 10329 10250;10290;10329;10371;10411;10456 93.763 46.842 1 851120 15303 1706 9822 9828 18702;18703;18704;18705;18706;18707 18704 0.023543926227148404 IYIDGYKCI 9 Unmodified _IYIDGYKCI_ 0 0 0 REV__L1MC5a_dup14918|chr17:39295554-39296109:-|1.8646736726877944|0.0237587132535128|6.29|151.0|42|3|anti-sense REV__L1MC5a_dup14918|chr17:39295554-39296109:-|1.8646736726877944|0.0237587132535128|6.29|151.0|42|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.2781982421875 2 544.27826 1086.54197 NaN NaN NaN NaN NaN NaN NaN 57.551 1 61.083 60.583 61.583 3.5317 0 0 0 0.39518 1 12390 12390 1.8442 0 1 + 15304 27136 9823 9829 18708 18708 0.002158649940838586 IYIDLRGI 8 Unmodified _IYIDLRGI_ 0 0 0 ENSG00000114491|ENST00000232607|UMPS ENSG00000114491|ENST00000232607|UMPS ENSG00000114491|ENST00000232607|UMPS MULTI-MSMS UPN47_class_I_Rep_1 2 481.7870178222656 2 481.78711 961.559667 0.092691 4.4658E-05 0.025634 1.235E-05 0.11833 5.7008E-05 481.7870801012019 68.245 0.81862 71.61 71.181 72 3.3646 82 64 2 0 0 0 0.82752 1 16549 16549 4.756 0 1 81278 15305 2078 9824 9830 18709 18709 0.07734948311247081 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN48_class_I_Rep_3 7 541.3065795898438 2 541.305667 1080.59678 0.5287 0.00028619 0.8765 0.00047445 1.4052 0.00076064 541.3059764594684 60.719 0.53338 64.232 63.986 64.519 3.5128 87 52 2 0 0 0 0.24936 2 13301 13301;13373 17.113 17.113 1 287370 15306 1475 9825 9831 18710;18711 18710 0.059706198569983826 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 541.305667 1080.59678 0.55635 0.00030116 0.41619 0.00022529 0.97255 0.00052645 541.3058044034046 60.86 0.55464 64.334 64.075 64.63 3.4737 0.037147 -0.00033799 NaN 17.113 68 46 2 NaN NaN NaN NaN 0 NaN NaN 0 223330 15307 1475 9825 9831 0.059706198569983826 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 541.305667 1080.59678 0.54511 0.00029507 0.73854 0.00039978 1.2837 0.00069485 541.3058259101779 60.846 0.50299 64.325 64.095 64.598 3.4785 0.027795 1.0989E-05 NaN 17.113 66 47 2 NaN NaN NaN NaN 0 NaN NaN 0 266870 15308 1475 9825 9831 0.059706198569983826 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 541.305667 1080.59678 0.5287 0.00028619 0.8765 0.00047445 1.4052 0.00076064 541.3059764594684 60.719 0.53338 64.232 63.986 64.519 3.5128 -0.064942 0.00016034 NaN 17.113 87 52 2 NaN NaN NaN NaN 0 NaN NaN 0 287370 15309 1475 9825 9831 0.059706198569983826 IYIDSTPSEL 10 Unmodified _IYIDSTPSEL_ 0 0 0 REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|227|3|anti-sense REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|227|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 569.287109375 2 569.287337 1136.56012 0.51707 0.00029436 -0.017061 -9.7125E-06 0.50001 0.00028465 569.2871842788287 58 0.79654 61.487 61.13 61.927 3.487 90 51 2 0 0 0 0.31342 1 12615 12615 29.082 5.2918 1 451160 + 15310 30597 9826 9832 18712 18712 -0.0026972155023941013 IYIDSTPSEL 10 Unmodified _IYIDSTPSEL_ 0 0 0 REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|227|3|anti-sense REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|227|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 569.2872924804688 2 569.287337 1136.56012 0.3916 0.00022294 -0.016532 -9.4112E-06 0.37507 0.00021352 569.2871289736712 57.804 0.80582 61.336 61.009 61.814 3.5317 118 55 3 0 0 0 0.30285 2 12498 12411;12498 32.305 5.4218 1 455850 + 15311 30597 9826 9832 18713;18714 18714 -0.0026972155023941013 IYIKFLKM 8 Unmodified _IYIKFLKM_ 0 0 0 L1ME1_dup445|chr1:40175803-40176458:-|1.2268582469020992|0.007063828856681|7.44|151.0|18|2|sense L1ME1_dup445|chr1:40175803-40176458:-|1.2268582469020992|0.007063828856681|7.44|151.0|18|2|sense L1ME1_dup445|chr1:40175803-40176458:-|1.2268582469020992|0.007063828856681|7.44|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 528.31982421875 2 528.319731 1054.62491 NaN NaN NaN NaN NaN NaN NaN 77.17 1 80.502 80.002 81.002 3.3315 0 0 0 0.38221 1 19131 19131 14.582 4.3983 1 15312 12408 9827 9833 18715 18715 0.09978226512725996 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS UPN48_class_I_Rep_1 5 577.3532104492188 2 577.352617 1152.69068 0.40455 0.00023357 -0.05734 -3.3105E-05 0.34721 0.00020046 577.3524493187132 45.552 0.64694 49.069 48.823 49.469 3.5162 69 43 2 0 0 0 0.057664 1 8817 8817 45.7 9.5726 1 140980 15313 1660 9828 9834 18716 18716 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-SECPEP UPN48_class_I_Rep_2 6 576.7796630859375 2 577.352617 1152.69068 0.39317 0.000227 0.18331 0.00010583 0.57647 0.00033283 577.8544605909736 45.297 0.63795 49.055 48.825 49.463 3.7579 79 51 2 0 0 0 0.078685 1 8767 8767 27.629 8.3718 1 164770 15314 1660 9828 9834 18717 18717 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 577.352617 1152.69068 0.40062 0.0002313 -0.36203 -0.00020902 0.038587 2.2278E-05 577.3523330699586 45.495 0.60493 49.132 48.938 49.543 3.6369 0.046625 -0.00031706 NaN 45.7 68 44 2 NaN NaN NaN NaN 0 NaN NaN 0 152400 15315 1660 9828 9834 0.12044338959276502 IYILDLKNF 9 Unmodified _IYILDLKNF_ 0 0 0 REV__L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|7|1|sense REV__L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.3305053710938 2 569.828975 1137.6434 0.47823 0.00027251 -0.083627 -4.7653E-05 0.3946 0.00022486 569.8288726137896 73.397 1.2032 76.974 76.53 77.733 3.5779 316 132 4 0 0 0 0.24936 1 17114 17114 17.113 0 1 1577400 + 15316 28749 9829 9835 18718 18718 0.08008059688268077 IYILDPELL 9 Unmodified _IYILDPELL_ 0 0 0 ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ ENST00000529698.1_1_11:46396583-46398763:+|nuORF ENST00000529698.1_1_11:46396583-46398763:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 544.8154296875 2 544.815533 1087.61651 0.42336 0.00023065 -0.047416 -2.5833E-05 0.37595 0.00020482 544.8151786521179 91.644 0.18222 95.27 95.195 95.377 3.626 39 25 2 0 0 0 0.056917 1 22028 22028 46.021 13.715 1 899510 15317 3526 9830 9836 18719 18719 0.07620951077092286 IYILDPELL 9 Unmodified _IYILDPELL_ 0 0 0 ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ ENST00000529698.1_1_11:46396583-46398763:+|nuORF ENST00000529698.1_1_11:46396583-46398763:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 544.815533 1087.61651 0.49748 0.00027103 -0.16484 -8.9806E-05 0.33264 0.00018123 544.8154153349573 91.429 0.042351 95.293 95.269 95.311 3.8634 0.01136 -7.7426E-05 NaN 46.021 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 724740 15318 3526 9830 9836 0.07620951077092286 IYILFHELE 9 Unmodified _IYILFHELE_ 0 0 0 REV__L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|89|3|anti-sense REV__L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|89|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 588.8175659179688 2 588.818607 1175.62266 0.045469 2.6773E-05 -0.50818 -0.00029923 -0.46271 -0.00027245 588.8182516836937 36.686 0.93951 40.085 39.618 40.558 3.3988 98 69 2 0 0 0 0.46434 1 6839 6839 4.3292 1.0479 1 135970 + 15319 28073 9831 9837 18720 18720 0.0418746930861289 IYIPDQIFY 9 Unmodified _IYIPDQIFY_ 0 0 0 Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|13|2|sense Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|13|2|sense Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3053588867188 2 586.305332 1170.59611 0.4898 0.00028717 0.1058 6.2034E-05 0.59561 0.00034921 586.3053583974272 66.583 0.62973 70.035 69.724 70.354 3.4516 90 41 3 0 0 0 0.28552 2 15158 15158;15200 14.838 1.7958 1 233290 15320 33462 9832 9838 18721;18722 18721 0.01763780417286398 IYIRYITL 8 Unmodified _IYIRYITL_ 0 0 0 REV__L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|89|1|anti-sense REV__L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|89|1|anti-sense MSMS UPN47_class_I_Rep_2 3 527.8184814453125 2 527.81841 1053.62227 NaN NaN NaN NaN NaN NaN NaN 76.27 1 79.592 79.092 80.092 3.3216 0 0 0 0.3458 1 18873 18873 23.148 0 1 + 15321 28461 9833 9839 18723 18723 0.09760094379407747 IYISVYWFF 9 Unmodified _IYISVYWFF_ 0 0 0 L1M4a1_dup1953|chr13:21030622-21031569:-|1.3781651935512176|0.0132688005899582|6.7|151.0|47|1|anti-sense L1M4a1_dup1953|chr13:21030622-21031569:-|1.3781651935512176|0.0132688005899582|6.7|151.0|47|1|anti-sense L1M4a1_dup1953|chr13:21030622-21031569:-|1.3781651935512176|0.0132688005899582|6.7|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_3 7 619.3168334960938 2 619.318243 1236.62193 NaN NaN NaN NaN NaN NaN NaN 72.322 1 75.848 75.348 76.348 3.5266 0 0 0 0.1724 1 16850 16850 18.135 3.5533 1 15322 8946 9834 9840 18724 18724 0.013086746595490695 IYIWDTCD 8 Unmodified _IYIWDTCD_ 0 0 0 L1MA4A_dup5354|chr15:51561606-51562248:+|1.2910809936684513|0.0502228885733432|4.68|151.0|36|2|anti-sense L1MA4A_dup5354|chr15:51561606-51562248:+|1.2910809936684513|0.0502228885733432|4.68|151.0|36|2|anti-sense L1MA4A_dup5354|chr15:51561606-51562248:+|1.2910809936684513|0.0502228885733432|4.68|151.0|36|2|anti-sense MSMS UPN46_class_I_Rep_3 1 514.3577270507812 2 514.723318 1027.43208 NaN NaN NaN NaN NaN NaN NaN 17.8 1 17.8 17.3 18.3 0 0 0 0 0.40738 1 1458 1458 0.79363 0 1 15323 9828 9835 9841 18725 18725 -0.08053560345115329 IYIWIYFYN 9 Unmodified _IYIWIYFYN_ 0 0 0 REV__L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|50|1|anti-sense REV__L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 647.8298950195312 2 647.828975 1293.6434 NaN NaN NaN NaN NaN NaN NaN 33.592 1 37.272 36.772 37.772 3.6797 0 0 0 0.40038 1 5242 5242 0.6015 0 1 + 15324 28510 9836 9842 18726 18726 0.008320596883095277 IYIYIFYV 8 Unmodified _IYIYIFYV_ 0 0 0 L1MC4_dup17320|chr12:11206341-11207827:+|2.052254865192655|0.0086118365573146|7.9|151.0|35|3|sense L1MC4_dup17320|chr12:11206341-11207827:+|2.052254865192655|0.0086118365573146|7.9|151.0|35|3|sense L1MC4_dup17320|chr12:11206341-11207827:+|2.052254865192655|0.0086118365573146|7.9|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 547.3006591796875 2 547.302062 1092.58957 NaN NaN NaN NaN NaN NaN NaN 82.79 1 86.329 85.829 86.829 3.5386 0 0 0 0.4032 1 20692 20692 6.3541 1.1234 1 15325 11420 9837 9843 18727 18727 0.04697887256543254 IYKGSVYL 8 Unmodified _IYKGSVYL_ 0 0 0 ENST00000426094.5_1_16:278330-278429:-|nuORF ENST00000426094.5_1_16:278330-278429:-|nuORF ENST00000426094.5_1_16:278330-278429:-|nuORF MSMS UPN48_class_I_Rep_2 6 471.7684326171875 2 471.768386 941.522219 NaN NaN NaN NaN NaN NaN NaN 49.63 1 53.324 52.824 53.824 3.6946 0 0 0 0.3903 1 10048 10048 11.64 0 1 15326 6702 9838 9844 18728 18728 0.04911857045601664 IYKHGMCFY 9 Unmodified _IYKHGMCFY_ 0 0 0 L1PB1_dup12332|chr19:24082828-24083541:+|3.2601052882051444|0.2448804299297638|3.73|151.0|35|1|anti-sense L1PB1_dup12332|chr19:24082828-24083541:+|3.2601052882051444|0.2448804299297638|3.73|151.0|35|1|anti-sense L1PB1_dup12332|chr19:24082828-24083541:+|3.2601052882051444|0.2448804299297638|3.73|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_2 3 581.2640380859375 2 581.26463 1160.51471 NaN NaN NaN NaN NaN NaN NaN 45.392 1 48.745 48.245 49.245 3.3534 0 0 0 0.35339 1 9561 9561 7.9102 1.5561 1 15327 15031 9839 9845 18729 18729 -0.05912941817950923 IYKKLTKKWI 10 Unmodified _IYKKLTKKWI_ 0 0 0 L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|5|1|sense L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|5|1|sense L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|5|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.799072265625 3 440.951586 1319.83293 0.12175 5.3688E-05 0.012299 5.4234E-06 0.13405 5.9111E-05 440.95159504455575 72.351 0.049881 72.351 72.307 72.357 0 6 4 2 0 0 0 0.84575 1 16708 16708 0.15932 0 1 73884 15328 12062 9840 9846 18730 18730 0.18580551701461445 IYKKLTKKWI 10 Unmodified _IYKKLTKKWI_ 0 0 0 L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|5|1|sense L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|5|1|sense L1MD3_dup1660|chr5:175944413-175945593:+|1.0071409734032246|0.1100415563376885|3.19|151.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 440.79931640625 3 440.951586 1319.83293 0.18145 8.0009E-05 1.5636 0.00068946 1.745 0.00076947 440.9519941119149 65.172 0.332 68.679 68.435 68.767 3.5077 28 22 2 0 0 0 0.84575 1 14656 14656 0.15932 0 1 107940 15329 12062 9840 9846 18731 18731 0.18580551701461445 IYKPVTDFF 9 Unmodified _IYKPVTDFF_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS UPN48_class_I_Rep_1 5 565.3004150390625 2 565.30005 1128.58555 0.54208 0.00030644 0.017562 9.928E-06 0.55964 0.00031637 565.3001459630236 64.256 0.57368 67.713 67.438 68.012 3.4578 69 43 2 0 0 0 0.11355 1 14577 14577 31.268 8.5321 1 156280 15330 3063 9841 9847 18732 18732 0.026397977628448643 IYKPVTDFF 9 Unmodified _IYKPVTDFF_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MSMS UPN48_class_I_Rep_3 7 565.3003540039062 2 565.30005 1128.58555 NaN NaN NaN NaN NaN NaN NaN 64.075 1 67.584 67.084 68.084 3.5083 0 0 0 0.05227 1 14377 14377 36.127 7.0454 1 15331 3063 9841 9847 18733 18733 0.026397977628448643 IYKRFRFT 8 Unmodified _IYKRFRFT_ 0 0 0 REV__L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|42|2|sense REV__L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|42|2|sense MSMS UPN48_class_I_Rep_3 7 565.825439453125 2 565.827101 1129.63965 NaN NaN NaN NaN NaN NaN NaN 71.38 1 74.898 74.398 75.398 3.5185 0 0 0 0.40364 1 16572 16572 5.7604 0 1 + 15332 29524 9842 9848 18734 18734 0.08001434705079191 IYKSRKGP 8 Unmodified _IYKSRKGP_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|67|2|sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|67|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.78485107421875 2 474.784902 947.55525 0.22492 0.00010679 -0.31083 -0.00014758 -0.085909 -4.0788E-05 474.7846768449574 40.916 1.0477 40.916 40.017 41.065 0 234 117 3 0 0 0 0.82752 1 7771 7771 9.3474 3.587 1 1537700 + 15333 23737 9843 9849 18735 18735 0.07937483888338193 IYKSSCVPII 10 Unmodified _IYKSSCVPII_ 0 0 0 L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|162|3|anti-sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|162|3|anti-sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|162|3|anti-sense MSMS UPN48_class_I_Rep_3 7 561.6887817382812 2 561.81501 1121.61547 NaN NaN NaN NaN NaN NaN NaN 95.051 1 98.953 98.453 99.453 3.9016 0 0 0 0.53105 1 22528 22528 3.9444 1.6417 1 15334 12443 9844 9850 18736 18736 0.05952413436534698 IYKTSILVF 9 Unmodified _IYKTSILVF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_1 5 542.325927734375 2 542.326068 1082.63758 0.49105 0.00026631 -0.41765 -0.0002265 0.073403 3.9808E-05 542.3257275982598 65.765 0.56342 69.216 68.973 69.536 3.4516 52 38 2 0 0 0 0.16559 1 15041 15041 24.021 4.7636 1 153570 15335 2487 9845 9851 18737 18737 0.09956961176635559 IYKTSILVF 9 Unmodified _IYKTSILVF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_2 6 542.3257446289062 2 542.326068 1082.63758 0.50901 0.00027605 -0.37821 -0.00020511 0.1308 7.0938E-05 542.3257049187215 65.612 0.64581 69.092 68.826 69.472 3.4792 65 46 2 0 0 0 0.38714 1 15000 15000 8.7454 1.4562 1 139760 15336 2487 9845 9851 18738 18738 0.09956961176635559 IYKTSILVF 9 Unmodified _IYKTSILVF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_3 7 542.3255004882812 2 542.326068 1082.63758 0.55596 0.00030151 -0.23382 -0.0001268 0.32214 0.00017471 542.3258351187104 65.547 0.66522 69.055 68.738 69.403 3.5077 73 45 2 0 0 0 0.26468 2 14847 14847;14888 16.149 3.9084 1 170520 15337 2487 9845 9851 18739;18740 18739 0.09956961176635559 IYKWMYYYYRS 11 Unmodified _IYKWMYYYYRS_ 0 0 0 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 MSMS UPN47_class_I_Rep_2 3 545.7409057617188 3 545.927 1634.75917 NaN NaN NaN NaN NaN NaN NaN 27.362 1 30.86 30.36 31.36 3.4986 0 0 0 0.38417 1 4096 4096 0.073264 0.073264 1 + 15338 17820 9846 9852 18741 18741 -0.03281784523164788 IYLDELQVI 9 Unmodified _IYLDELQVI_ 0 0 0 ENST00000473034.5_1_2:219533245-219536693:-|nuORF;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENSG00000163481|ENST00000295704|RNF25 ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENST00000473034.5_1_2:219533245-219536693:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 553.3106079101562 2 553.310615 1104.60668 0.49094 0.00027164 0.042699 2.3626E-05 0.53364 0.00029527 553.3105212780624 83.451 0.38567 87.132 86.984 87.369 3.6814 64 42 2 0 0 0 0.14216 1 19830 19830 26.268 3.5319 1 143240 15339 4006 9847 9853 18742 18742 0.05855763071713227 IYLDELQVI 9 Unmodified _IYLDELQVI_ 0 0 0 ENST00000473034.5_1_2:219533245-219536693:-|nuORF;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENSG00000163481|ENST00000295704|RNF25 ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENST00000473034.5_1_2:219533245-219536693:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 553.310615 1104.60668 0.47629 0.00026354 -0.32467 -0.00017964 0.15162 8.3893E-05 553.3104638244436 84.086 0.24904 87.436 87.302 87.551 3.35 0.21175 -0.0003955 NaN 26.268 38 29 2 NaN NaN NaN NaN 0 NaN NaN 0 52405 15340 4006 9847 9853 0.05855763071713227 IYLDSQNKY 9 Unmodified _IYLDSQNKY_ 0 0 0 REV__L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|38|2|sense REV__L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|38|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.2881469726562 2 572.287671 1142.56079 0.10258 5.8705E-05 0.052401 2.9988E-05 0.15498 8.8693E-05 572.2874840448077 45.964 0.49998 49.664 49.386 49.886 3.6999 49 30 2 0 0 0 0.46869 1 9731 9731 3.9444 0.3479 1 78895 + 15341 28225 9848 9854 18743 18743 -0.004788821105194074 IYLFSYFCR 9 Unmodified _IYLFSYFCR_ 0 0 0 REV__L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|71|1|anti-sense REV__L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|71|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.2996826171875 2 606.299527 1210.5845 0.45674 0.00027692 0.031726 1.9236E-05 0.48847 0.00029616 606.2994950981765 74.16 0.26465 77.65 77.543 77.808 3.49 44 28 3 0 0 0 0.46869 1 17544 17544 3.9444 1.6417 1 317460 + 15342 27016 9849 9855 18744 18744 -0.012367398777087146 IYLHEPEKE 9 Unmodified _IYLHEPEKE_ 0 0 0 REV__L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|38|2|sense REV__L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|38|2|sense MSMS UPN47_class_I_Rep_3 4 579.293212890625 2 579.295496 1156.57644 NaN NaN NaN NaN NaN NaN NaN 42.561 1 45.8 45.3 46.3 3.2394 0 0 0 0.35339 1 8745 8745 7.9102 0.3012 1 + 15343 29116 9850 9856 18745 18745 0.004414044065242706 IYLHHDESV 9 Unmodified _IYLHHDESV_ 0 0 0 ENSG00000185104|ENST00000396153|FAF1;nc|ENSG00000185104|Q9UNN5-2|FAF1 ENSG00000185104|ENST00000396153|FAF1 ENSG00000185104|ENST00000396153|FAF1 MSMS UPN47_class_I_Rep_3 4 556.7725219726562 2 556.772188 1111.52982 NaN NaN NaN NaN NaN NaN NaN 81.539 1 84.862 84.362 85.362 3.3231 0 0 0 0.39428 1 20408 20408 2.0598 0.21551 1 15344 5085 9851 9857 18746 18746 -0.02148035424761474 IYLHNLVQF 9 Unmodified _IYLHNLVQF_ 0 0 0 REV__L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|38|2|sense REV__L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.8009643554688 2 573.818941 1145.62333 0.51023 0.00029278 -0.030851 -1.7703E-05 0.47938 0.00027508 573.8188244766692 65.708 1.2791 69.216 68.693 69.972 3.5077 254 91 4 0 0 0 0.12799 1 15084 15084 28.487 28.487 1 2131400 + 15345 27010 9852 9858 18747 18747 0.0563430874833557 IYLKLHIYKLI 11 Unmodified _IYLKLHIYKLI_ 0 0 0 REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|18|2|sense REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|18|2|sense MSMS UPN46_class_I_Rep_3 1 472.97119140625 3 472.970758 1415.89044 NaN NaN NaN NaN NaN NaN NaN 57.029 1 57.029 56.529 57.529 0 0 0 0 0.38417 1 12474 12474 1.3296 0.82369 1 + 15346 23484 9853 9859 18748 18748 0.199133939070407 IYLKLHIYKLI 11 Unmodified _IYLKLHIYKLI_ 0 0 0 REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|18|2|sense REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.9712219238281 3 472.970758 1415.89044 0.13081 6.187E-05 1.0836 0.00051251 1.2144 0.00057438 473.3055865382865 54.447 0.24857 57.961 57.817 58.065 3.5143 21 16 2 0 0 0 0.68478 1 11524 11524 0.094841 0 1 104620 + 15347 23484 9853 9859 18749 18749 0.199133939070407 IYLLIHNNF 9 Unmodified _IYLLIHNNF_ 0 0 0 ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53 ENST00000471220.5_1_1:111415857-111435203:+|nuORF ENST00000471220.5_1_1:111415857-111435203:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 573.8191528320312 2 573.818941 1145.62333 0.49291 0.00028284 -0.00081569 -4.6806E-07 0.49209 0.00028237 573.8188637586907 65.953 1.1371 69.405 68.989 70.126 3.4516 227 77 4 0 0 0 6.2139E-05 9 14986 14941;14986;15027;15067;15108;15145;15190;15206;15247 188.08 122.84 1 3379800 15348 3274 9854 9860 18750;18751;18752;18753;18754;18755;18756;18757;18758 18751 0.05634308748312833 IYLLIHNNF 9 Unmodified _IYLLIHNNF_ 0 0 0 ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53 ENST00000471220.5_1_1:111415857-111435203:+|nuORF ENST00000471220.5_1_1:111415857-111435203:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 573.819091796875 2 573.818941 1145.62333 0.50744 0.00029118 -0.039001 -2.238E-05 0.46844 0.0002688 573.818827984526 65.78 1.2021 69.266 68.786 69.988 3.4866 255 86 4 0 0 0 0.0045793 8 14922 14884;14922;14964;15005;15047;15087;15128;15136 188.08 116.16 1 2193300 15349 3274 9854 9860 18759;18760;18761;18762;18763;18764;18765;18766 18760 0.05634308748312833 IYLLIHNNF 9 Unmodified _IYLLIHNNF_ 0 0 0 ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53 ENST00000471220.5_1_1:111415857-111435203:+|nuORF ENST00000471220.5_1_1:111415857-111435203:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 573.8191528320312 2 573.818941 1145.62333 0.51023 0.00029278 -0.030851 -1.7703E-05 0.47938 0.00027508 573.8188244766692 65.708 1.2791 69.216 68.693 69.972 3.5077 254 91 4 0 0 0 9.1329E-13 10 14879 14759;14761;14800;14839;14879;14916;14955;14997;15011;15047 207.55 136.83 1 2131400 15350 3274 9854 9860 18767;18768;18769;18770;18771;18772;18773;18774;18775;18776 18771 0.05634308748312833 IYLNALCPPM 10 Unmodified _IYLNALCPPM_ 0 0 0 REV__AluJr_dup67060|chr16:21897717-21898028:+|1.617362355479484|0.0888406436209462|4.19|150.0|16|1|anti-sense REV__AluJr_dup67060|chr16:21897717-21898028:+|1.617362355479484|0.0888406436209462|4.19|150.0|16|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.7876586914062 2 567.787938 1133.56132 0.49658 0.00028195 -3.0843 -0.0017512 -2.5877 -0.0014693 567.7862324968982 66.62 0.23927 70.128 69.996 70.235 3.5077 26 15 2 0 0 0 0.53654 1 15116 15116 7.2892 0.56607 1 106730 + 15351 17050 9855 9861 18777 18777 -0.00011501986682560528 IYLPCMPYF 9 Unmodified _IYLPCMPYF_ 0 0 0 ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|67|3|sense ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|67|3|sense ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|67|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.7706909179688 2 573.771757 1145.52896 0.46597 0.00026736 -1.1324 -0.00064974 -0.66643 -0.00038238 573.7710919736633 78.14 0.40093 81.421 81.227 81.628 3.2816 72 43 2 0 0 0 0.37662 1 19484 19484 9.3474 0 1 111250 15352 7716 9856 9862 18778 18778 -0.03798289389669662 IYLPPEASSQR 11 Unmodified _IYLPPEASSQR_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS UPN46_class_I_Rep_3 1 630.8321533203125 2 630.832777 1259.651 0.67685 0.00042698 -0.28661 -0.0001808 0.39024 0.00024617 630.8327214264559 45.555 0.4725 45.555 45.311 45.783 0 79 45 2 0 0 0 0.29054 2 9264 9218;9264 16.566 5.0712 1 259590 15353 2621 9857 9863 18779;18780 18780 0.031561672178895606 IYLRLSYSL 9 Unmodified _IYLRLSYSL_ 0 0 0 L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|246|2|anti-sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|246|2|anti-sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|246|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3265380859375 2 564.326599 1126.63865 0.44915 0.00025347 -0.18635 -0.00010516 0.2628 0.0001483 564.3263736448553 71.647 0.5399 74.866 74.652 75.192 3.2188 58 40 2 0 0 0 0.31407 1 17610 17610 13.042 0.80181 1 112820 15354 8740 9858 9864 18781 18781 0.08039175545513899 IYLSLSRYL 9 Unmodified _IYLSLSRYL_ 0 0 0 REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.3284912109375 2 564.326599 1126.63865 0.42348 0.00023898 0.03485 1.9667E-05 0.45833 0.00025865 564.32648876425 71.829 0.64727 75.119 74.655 75.302 3.2899 72 52 2 0 0 0 0.30034 2 17554 17554;17589 13.906 1.6654 1 88891 + 15355 31704 9859 9865 18782;18783 18782 0.08039175545513899 IYLSLSRYL 9 Unmodified _IYLSLSRYL_ 0 0 0 REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.327392578125 2 564.326599 1126.63865 0.44915 0.00025347 -0.18635 -0.00010516 0.2628 0.0001483 564.3263736448553 71.647 0.5399 74.866 74.652 75.192 3.2188 58 40 2 0 0 0 0.21527 1 17653 17653 19.257 2.1441 1 112820 + 15356 31704 9859 9865 18784 18784 0.08039175545513899 IYLSLSRYL 9 Unmodified _IYLSLSRYL_ 0 0 0 REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 564.326599 1126.63865 0.42348 0.00023898 0.03485 1.9667E-05 0.45833 0.00025865 564.32648876425 71.829 0.64727 75.119 74.655 75.302 3.2899 0.1269 8.8394E-05 NaN 19.257 72 52 2 NaN NaN NaN NaN 0 NaN NaN 0 88891 + 15357 31704 9859 9865 0.08039175545513899 IYLSLSRYL 9 Unmodified _IYLSLSRYL_ 0 0 0 REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense REV__MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 564.326599 1126.63865 0.44915 0.00025347 -0.18635 -0.00010516 0.2628 0.0001483 564.3263736448553 71.647 0.5399 74.866 74.652 75.192 3.2188 -0.1269 -0.00016126 NaN 19.257 58 40 2 NaN NaN NaN NaN 0 NaN NaN 0 112820 + 15358 31704 9859 9865 0.08039175545513899 IYLTFPVAM 9 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ IYLTFPVAM(1) IYLTFPVAM(130) 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 535.7832641601562 2 535.783179 1069.5518 0.59241 0.0003174 -0.21832 -0.00011697 0.37408 0.00020043 535.7829040011233 78.091 0.82069 81.713 81.345 82.165 3.6215 235 95 3 0 0 0 0.0057082 1 18482 18482 129.2 54.804 1 730910 15359 5673 9860 9866 18785 18785 170 0.019810529994401804 IYLTFPVAM 9 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 535.783179 1069.5518 0.37421 0.00020049 -0.067229 -3.602E-05 0.30698 0.00016447 535.7830604443616 78.125 0.35189 81.647 81.362 81.714 3.5221 -0.023441 5.3817E-05 NaN 129.2 63 38 2 NaN NaN NaN NaN 0 NaN NaN 0 467750 15360 5673 9860 9866 170 0.019810529994401804 IYLTFPVAM 9 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 535.783179 1069.5518 0.44559 0.00023874 -0.045922 -2.4604E-05 0.39967 0.00021414 535.7830081169183 78.029 0.75842 81.651 81.351 82.11 3.6222 -0.019165 7.6649E-05 NaN 129.2 215 83 3 NaN NaN NaN NaN 0 NaN NaN 0 708750 15361 5673 9860 9866 170 0.019810529994401804 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 602.7745971679688 2 602.772485 1203.53042 0.45311 0.00027312 3.1194 0.0018803 3.5725 0.0021534 602.7743821688733 74.928 0.046982 78.418 78.389 78.436 3.49 9 5 2 0 0 0 0.27364 1 17728 17728 18.146 1.0598 1 62166 + 15362 25698 9861 9867 18786 18786 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 602.7730712890625 2 602.772485 1203.53042 0.45303 0.00027308 0.68398 0.00041228 1.137 0.00068536 602.7729092634382 75.052 0.16094 78.542 78.436 78.597 3.49 41 18 3 0 0 0 0.27364 1 17759 17759 18.146 1.0598 1 146480 + 15363 25698 9861 9867 18787 18787 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 602.7743530273438 2 602.772485 1203.53042 0.4803 0.00028951 0.7326 0.00044159 1.2129 0.0007311 602.7728929610427 74.91 0.17591 78.5 78.344 78.52 3.59 24 21 2 0 0 0 0.4608 1 17615 17615 8.7454 2.3913 1 126410 + 15364 25698 9861 9867 18788 18788 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 602.7743530273438 2 602.772485 1203.53042 0.59026 0.00035579 2.611 0.0015738 3.2013 0.0019296 602.7741373977127 74.826 0.077644 78.392 78.341 78.419 3.5658 10 8 2 0 0 0 0.32821 1 17543 17543 13.042 1.4022 1 53462 + 15365 25698 9861 9867 18789 18789 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 603.2735595703125 2 602.772485 1203.53042 0.59007 0.00035568 1.2965 0.00078152 1.8866 0.0011372 602.7733084032068 74.875 0.1001 78.441 78.409 78.509 3.5659 10 7 2 0 0 0 0.32821 1 17558 17558 13.042 1.928 1 191030 + 15366 25698 9861 9867 18790 18790 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 602.772485 1203.53042 0.45303 0.00027308 0.68398 0.00041228 1.137 0.00068536 602.7729092634382 75.052 0.16094 78.542 78.436 78.597 3.49 0.010831 -5.3191E-05 NaN 18.146 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 146480 + 15367 25698 9861 9867 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 602.772485 1203.53042 0.45311 0.00027312 3.1194 0.0018803 3.5725 0.0021534 602.7743821688733 74.928 0.046982 78.418 78.389 78.436 3.49 -0.018844 0.0019595 NaN 18.146 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 62166 + 15368 25698 9861 9867 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 602.772485 1203.53042 0.48051 0.00028964 0.38257 0.0002306 0.86308 0.00052024 603.2743460133055 75.022 0.060944 78.611 78.595 78.656 3.59 0.079989 -0.00041655 NaN 18.146 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 71379 + 15369 25698 9861 9867 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 602.772485 1203.53042 0.59007 0.00035568 1.2965 0.00078152 1.8866 0.0011372 602.7733084032068 74.875 0.1001 78.441 78.409 78.509 3.5659 -0.090821 0.00068529 NaN 18.146 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 191030 + 15370 25698 9861 9867 -0.06320700091555409 IYLVGVDGCCY 11 Unmodified _IYLVGVDGCCY_ 0 0 0 REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense REV__L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 602.772485 1203.53042 0.59026 0.00035579 2.611 0.0015738 3.2013 0.0019296 602.7741373977127 74.826 0.077644 78.392 78.341 78.419 3.5658 -0.044659 0.0013467 NaN 18.146 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 53462 + 15371 25698 9861 9867 -0.06320700091555409 IYLWEFLLAL 10 Unmodified _IYLWEFLLAL_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1 ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000120690|P32519-2|ELF1 ENSG00000102034|ENST00000308167|ELF4 MSMS UPN46_class_I_Rep_3 1 640.8679809570312 2 640.8681 1279.72165 NaN NaN NaN NaN NaN NaN NaN 88.368 1 88.368 87.868 88.868 0 0 0 0 0.53105 1 21219 21219 1.6526 0.17072 1 15372 1600;2334 9862 9868 18791 18791 0.09297492273549324 IYLYWMKKV 9 Unmodified _IYLYWMKKV_ 0 0 0 REV__L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|20|2|sense REV__L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 622.80078125 2 622.34902 1242.68349 0.49224 0.00030635 -1.7927 -0.0011157 -1.3004 -0.00080933 622.8492361119702 67.585 0.10633 71.037 70.966 71.072 3.4516 10 6 2 0 0 0 0.12034 1 15536 15536 7.2892 0 1 52134 + 15373 24877 9863 9869 18792 18792 0.071852830871876 IYLYWMKKV 9 Unmodified _IYLYWMKKV_ 0 0 0 REV__L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|20|2|sense REV__L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|20|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 622.34902 1242.68349 0.50701 0.00031553 -2.4833 -0.0015455 -1.9763 -0.00123 622.3481480757857 67.456 0.047371 70.952 70.93 70.977 3.4964 0.081452 -0.001537 NaN 7.2892 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 39823 + 15374 24877 9863 9869 0.071852830871876 IYMAANRR 8 Unmodified _IYMAANRR_ 0 0 0 MLT1F_dup3687|chr17:29718759-29719114:-|1.3212991736303503|0.0099993543460415|7.05|151.0|21|3|anti-sense MLT1F_dup3687|chr17:29718759-29719114:-|1.3212991736303503|0.0099993543460415|7.05|151.0|21|3|anti-sense MLT1F_dup3687|chr17:29718759-29719114:-|1.3212991736303503|0.0099993543460415|7.05|151.0|21|3|anti-sense MSMS UPN46_class_I_Rep_3 1 497.7655334472656 2 497.766186 993.517819 NaN NaN NaN NaN NaN NaN NaN 116.05 1 116.05 115.55 116.55 0 0 0 0 0.40604 1 28716 28716 2.5775 0.27475 1 15375 16382 9864 9870 18793 18793 0.02080069351052316 IYMANKHMK 9 Unmodified _IYMANKHMK_ 0 0 0 L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|120|2|sense;L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|1|1|sense;L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|52|1|sense;L1MB3_dup6200|chr6:156893325-156894501:+|1.006326178034013|0.0261645742940269|5.27|151.0|21|2|sense;L1PA7_dup6622|chr8:42934395-42938690:-|1.980681188347708|0.0626891197590687|4.98|151.0|130|3|sense;L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|71|3|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|120|2|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|120|2|sense MSMS UPN48_class_I_Rep_2 6 568.289306640625 2 568.291179 1134.56781 NaN NaN NaN NaN NaN NaN NaN 66.516 1 70.002 69.502 70.502 3.4866 0 0 0 0.38299 1 15202 15202 4.756 1.8668 1 15376 10436 9865 9871 18794 18794 0.005904359647047386 IYMANKHMK 9 Unmodified _IYMANKHMK_ 0 0 0 L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|120|2|sense;L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|1|1|sense;L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|52|1|sense;L1MB3_dup6200|chr6:156893325-156894501:+|1.006326178034013|0.0261645742940269|5.27|151.0|21|2|sense;L1PA7_dup6622|chr8:42934395-42938690:-|1.980681188347708|0.0626891197590687|4.98|151.0|130|3|sense;L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|71|3|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|120|2|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|120|2|sense MSMS UPN48_class_I_Rep_3 7 568.294677734375 2 568.291179 1134.56781 NaN NaN NaN NaN NaN NaN NaN 66.316 1 69.824 69.324 70.324 3.5077 0 0 0 0.38299 1 15053 15053 4.756 0.42677 1 15377 10436 9865 9871 18795 18795 0.005904359647047386 IYMDTLNIF 9 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ IYM(1)DTLNIF IYM(71)DTLNIF 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS UPN48_class_I_Rep_1 5 573.2806396484375 2 573.281 1144.54745 0.43285 0.00024814 -1.2254 -0.00070249 -0.79253 -0.00045434 573.2802258853138 77.505 0.29865 81.027 80.907 81.206 3.5221 41 24 3 0 0 0 0.0081951 1 18447 18447 71.134 9.7761 1 268730 15378 4196 9866 9872 18796 18796 136 -0.019044562141289134 IYMDTLNIF 9 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ IYM(1)DTLNIF IYM(89)DTLNIF 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS UPN48_class_I_Rep_2 6 573.2816772460938 2 573.281 1144.54745 0.47674 0.00027331 -1.5365 -0.00088083 -1.0597 -0.00060752 573.2800574925318 77.331 0.65227 80.943 80.589 81.241 3.6116 130 62 3 0 0 0 0.0064938 3 18296 18296;18300;18336 88.904 10.754 1 440480 15379 4196 9866 9872 18797;18798;18799 18797 136 -0.019044562141289134 IYMEPKIA 8 Unmodified _IYMEPKIA_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|43|2|sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|43|2|sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|43|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.64654541015625 2 482.762246 963.50994 0.13979 6.7485E-05 0.069831 3.3712E-05 0.20962 0.0001012 482.7621966769692 80.205 0.61331 83.514 83.114 83.727 3.309 130 78 2 0 0 0 0.82752 1 20086 20086 5.2307 0.47466 1 422650 15380 13814 9867 9873 18800 18800 0.026724973109139682 IYMPCPPS 8 Unmodified _IYMPCPPS_ 0 0 0 L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|7|1|sense L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|7|1|sense L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 454.20782470703125 2 454.20625 906.397946 NaN NaN NaN NaN NaN NaN NaN 66.889 1 70.34 69.84 70.84 3.4516 0 0 0 0.40581 1 15329 15329 2.8892 0 1 15381 8723 9868 9874 18801 18801 -0.05899680037714461 IYMTYYYV 8 Unmodified _IYMTYYYV_ 0 0 0 L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|87|1|anti-sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|87|1|anti-sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|87|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2610473632812 2 558.259536 1114.50452 0.45874 0.00025609 -0.68698 -0.00038351 -0.22825 -0.00012742 558.2590974140892 75.377 0.48448 78.69 78.646 79.131 3.3127 78 47 3 0 0 0 0.82752 1 18710 18710 2.5775 0.27475 1 315510 15382 11954 9869 9875 18802 18802 -0.04815226271557549 IYNETLYMK 9 Unmodified _IYNETLYMK_ 0 0 0 REV__nc|ENSG00000165300|O94991-2|SLITRK5 REV__nc|ENSG00000165300|O94991-2|SLITRK5 MSMS UPN47_class_I_Rep_3 4 587.7947387695312 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 46.627 1 49.87 49.37 50.37 3.2439 0 0 0 0.35339 1 9992 9992 7.9102 2.1497 1 + 15383 20115 9870 9876 18803 18803 -0.005847673228117856 IYNEVKQIY 9 Unmodified _IYNEVKQIY_ 0 0 0 L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|170|3|sense;L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|50|1|sense L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|170|3|sense L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|170|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 585.3136596679688 2 585.313689 1168.61282 0.47625 0.00027876 0.094366 5.5234E-05 0.57062 0.00033399 585.313457600327 55.731 0.5724 59.239 58.982 59.554 3.5082 63 39 2 0 0 0 0.41259 1 11980 11980 7.2892 0 1 166190 15384 14344 9871 9877 18804 18804 0.03526281303243195 IYNEVKQIY 9 Unmodified _IYNEVKQIY_ 0 0 0 L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|170|3|sense;L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|50|1|sense L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|170|3|sense L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|170|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 585.3153076171875 2 585.313689 1168.61282 0.38566 0.00022573 0.19093 0.00011175 0.57659 0.00033749 585.3134508962495 55.676 0.61293 59.232 58.899 59.512 3.5554 70 41 2 0 0 0 0.46869 1 11871 11871 3.9444 0 1 147850 15385 14344 9871 9877 18805 18805 0.03526281303243195 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MULTI-MSMS UPN48_class_I_Rep_1 5 561.2925415039062 2 561.292559 1120.57057 0.496 0.0002784 -0.5636 -0.00031634 -0.067601 -3.7944E-05 561.292144967038 69.56 0.70493 73.015 72.785 73.49 3.4548 92 52 2 0 0 0 0.029391 5 16140 16100;16140;16178;16220;16227 57.471 42.095 1 284910 15386 5404 9872 9878 18806;18807;18808;18809;18810 18807 0.01510350685521189 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MULTI-MSMS UPN48_class_I_Rep_2 6 561.2926025390625 2 561.292559 1120.57057 0.49262 0.00027651 -0.33631 -0.00018877 0.15632 8.7739E-05 561.2922318813735 69.541 0.77864 73.062 72.616 73.395 3.5216 134 64 3 0 0 0 0.024782 7 16125 16014;16040;16054;16090;16125;16166;16180 60.39 42.243 1 266740 15387 5404 9872 9878 18811;18812;18813;18814;18815;18816;18817 18815 0.01510350685521189 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MULTI-MSMS UPN48_class_I_Rep_3 7 561.29248046875 2 561.292559 1120.57057 0.48424 0.0002718 -0.2337 -0.00013117 0.25054 0.00014063 561.2922316920813 69.376 0.77682 72.889 72.571 73.348 3.5128 111 61 3 0 0 0 0.0088319 5 16008 15904;15931;15970;16008;16047 70.716 44.374 1 275160 15388 5404 9872 9878 18818;18819;18820;18821;18822 18821 0.01510350685521189 IYNLCLFVF 9 Unmodified _IYNLCLFVF_ 0 0 0 L1MC2_dup2004|chr5:131690712-131691825:+|2.9852855276342907|0.0567101321457806|5.72|151.0|61|2|anti-sense L1MC2_dup2004|chr5:131690712-131691825:+|2.9852855276342907|0.0567101321457806|5.72|151.0|61|2|anti-sense L1MC2_dup2004|chr5:131690712-131691825:+|2.9852855276342907|0.0567101321457806|5.72|151.0|61|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.2898559570312 2 566.298996 1130.58344 0.4836 0.00027386 -0.64456 -0.00036501 -0.16096 -9.1149E-05 566.800118460322 77.751 0.16968 81.374 81.309 81.479 3.6222 24 15 2 0 0 0 0.081857 1 18429 18429 38.151 1.685 1 384420 15389 11229 9873 9879 18823 18823 0.023370457533701483 IYNPSARHK 9 Unmodified _IYNPSARHK_ 0 0 0 LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|61|2|anti-sense LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|61|2|anti-sense LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.2987060546875 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 31.685 1 35.326 34.826 35.826 3.641 0 0 0 0.39598 1 4799 4799 1.6526 0.45928 1 15390 15539 9874 9880 18824 18824 0.03887083285940207 IYNPSFIYP 9 Unmodified _IYNPSFIYP_ 0 0 0 L1PA5_dup8602|chr12:11101776-11103700:+|1.107423614197775|0.1298096975023044|3.09|151.0|62|1|anti-sense L1PA5_dup8602|chr12:11101776-11103700:+|1.107423614197775|0.1298096975023044|3.09|151.0|62|1|anti-sense L1PA5_dup8602|chr12:11101776-11103700:+|1.107423614197775|0.1298096975023044|3.09|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 557.2845458984375 2 557.2844 1112.55425 NaN NaN NaN NaN NaN NaN NaN 36.476 1 39.983 39.483 40.483 3.507 0 0 0 0.39428 1 6092 6092 2.0598 0.40713 1 15391 14519 9875 9881 18825 18825 0.002472247287641949 IYNWVQLF 8 Unmodified _IYNWVQLF_ 0 0 0 REV__L1MC4_dup16729|chr11:72957460-72957955:+|2.171861210736112|0.0457047861229637|5.57|151.0|19|3|sense REV__L1MC4_dup16729|chr11:72957460-72957955:+|2.171861210736112|0.0457047861229637|5.57|151.0|19|3|sense MSMS UPN48_class_I_Rep_3 7 541.7861938476562 2 541.78711 1081.55967 NaN NaN NaN NaN NaN NaN NaN 57.425 1 60.957 60.457 61.457 3.5317 0 0 0 0.388 1 12351 12351 12.532 1.7076 1 + 15392 26838 9876 9882 18826 18826 0.02214948311234366 IYNYPEQLF 9 Unmodified _IYNYPEQLF_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS UPN48_class_I_Rep_1 5 593.792724609375 2 593.792589 1185.57063 0.45025 0.00026735 0.06347 3.7688E-05 0.51371 0.00030504 593.7925532693312 74.13 0.59114 77.62 77.348 77.939 3.49 150 62 3 0 0 0 0.12096 1 17509 17509 29.841 14.592 1 435910 15393 4225 9877 9883 18827 18827 -0.0147369410515239 IYNYPEQLF 9 Unmodified _IYNYPEQLF_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 593.792589 1185.57063 0.47712 0.00028331 -0.030616 -1.818E-05 0.4465 0.00026513 593.7925258262508 74.019 0.61466 77.597 77.258 77.872 3.5779 -0.070165 -5.2021E-05 NaN 29.841 150 70 3 NaN NaN NaN NaN 0 NaN NaN 0 278340 15394 4225 9877 9883 -0.0147369410515239 IYNYPEQLF 9 Unmodified _IYNYPEQLF_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 593.792589 1185.57063 0.56967 0.00033827 -0.0081223 -4.823E-06 0.56155 0.00033344 593.792672374961 74.233 0.1777 77.784 77.709 77.887 3.5505 0.11669 -2.5308E-05 NaN 29.841 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 138390 15395 4225 9877 9883 -0.0147369410515239 IYNYTSFLNE 10 Unmodified _IYNYTSFLNE_ 0 0 0 REV__HAL1_dup18602|chr14:89591916-89592903:+|1.9425652311560413|0.0071399128431434|8.09|148.0|27|2|sense REV__HAL1_dup18602|chr14:89591916-89592903:+|1.9425652311560413|0.0071399128431434|8.09|148.0|27|2|sense MSMS UPN47_class_I_Rep_2 3 632.2964477539062 2 632.298236 1262.58192 NaN NaN NaN NaN NaN NaN NaN 49.457 1 52.804 52.304 53.304 3.3465 0 0 0 0.53105 1 10784 10784 3.2813 0.97858 1 + 15396 23384 9878 9884 18828 18828 -0.03886916801661755 IYPDSFTVL 9 Unmodified _IYPDSFTVL_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MULTI-MSMS UPN48_class_I_Rep_1 5 527.7775268554688 2 527.776408 1053.53826 0.33776 0.00017826 0.99273 0.00052394 1.3305 0.0007022 527.7769607569861 77.026 0.43574 80.536 80.213 80.649 3.5102 58 44 2 0 0 0 0.11683 1 18318 18318 30.637 5.2372 1 262840 15397 1990 9879 9885 18829 18829 0.01363518491848481 IYPDSFTVL 9 Unmodified _IYPDSFTVL_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MSMS UPN48_class_I_Rep_1 5 527.7775268554688 2 527.776408 1053.53826 NaN NaN NaN NaN NaN NaN NaN 76.856 1 80.367 79.867 80.867 3.5102 0 0 0 0.015779 1 18266 18266 54.774 12.679 1 15398 1990 9879 9885 18830 18830 0.01363518491848481 IYPEVVHMF 9 Oxidation (M) _IYPEVVHM(Oxidation (M))F_ IYPEVVHM(1)F IYPEVVHM(42)F 0 0 1 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS UPN48_class_I_Rep_3 7 575.7838134765625 2 575.78371 1149.55287 0.32943 0.00018968 0.24273 0.00013976 0.57216 0.00032944 575.7838277495781 54.049 1.0455 57.618 57.168 58.213 3.5694 186 76 3 0 0 0 0.066041 1 11397 11397 42.095 29.563 1 683200 15399 1183 9880 9886 18831 18831 33 -0.0159273263166142 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS UPN48_class_I_Rep_1 5 512.813232421875 2 512.813128 1023.6117 0.30954 0.00015874 -0.16352 -8.3856E-05 0.14602 7.4883E-05 512.8128965075585 67.205 0.73606 70.656 70.21 70.946 3.4516 83 47 3 0 0 0 0.088845 3 15431 15352;15391;15431 36.466 7.3846 1 226410 15400 1604 9881 9887 18832;18833;18834 18834 0.10084111724984268 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MSMS UPN48_class_I_Rep_1 5 512.8128662109375 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 67.343 1 70.794 70.294 71.294 3.4516 0 0 0 0.082921 1 15470 15470 28.173 2.7739 1 15401 1604 9881 9887 18835 18835 0.10084111724984268 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS UPN48_class_I_Rep_2 6 512.813232421875 2 512.813128 1023.6117 0.34496 0.0001769 -0.059336 -3.0428E-05 0.28563 0.00014647 512.8129426957381 66.982 0.78116 70.478 70.1 70.881 3.4964 89 49 2 0 0 0 0.12962 3 15306 15306;15357;15398 28.173 7.302 1 218280 15402 1604 9881 9887 18836;18837;18838 18836 0.10084111724984268 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS UPN48_class_I_Rep_3 7 512.8131103515625 2 512.813128 1023.6117 0.35852 0.00018386 -0.16293 -8.3552E-05 0.1956 0.0001003 512.8128962543692 66.825 0.8537 70.333 69.962 70.815 3.5077 92 59 2 0 0 0 0.088845 3 15199 15143;15199;15285 36.466 4.1607 1 252570 15403 1604 9881 9887 18839;18840;18841 18840 0.10084111724984268 IYPQIHLYN 9 Unmodified _IYPQIHLYN_ 0 0 0 L1MD1_dup3861|chrX:44889854-44890642:-|2.5341472307749053|0.0097100601495209|8.03|151.0|49|3|anti-sense L1MD1_dup3861|chrX:44889854-44890642:-|2.5341472307749053|0.0097100601495209|8.03|151.0|49|3|anti-sense L1MD1_dup3861|chrX:44889854-44890642:-|2.5341472307749053|0.0097100601495209|8.03|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8096923828125 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.48846 1 8964 8964 1.8442 0 1 1057600 15404 11936 9882 9888 18842 18842 0.02917718368689748 IYPSVLKTY 9 Unmodified _IYPSVLKTY_ 0 0 0 L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|4|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|4|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.8086547851562 2 542.307875 1082.6012 0.35636 0.00019326 -0.15893 -8.6187E-05 0.19743 0.00010707 542.3077562097504 80.766 0.27472 80.766 80.685 80.96 0 43 27 2 0 0 0 0.47197 1 19042 19042 3.5965 1.019 1 238240 15405 11223 9883 9889 18843 18843 0.06320084279923321 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MULTI-MSMS UPN48_class_I_Rep_1 5 566.2898559570312 2 566.289682 1130.56481 0.46387 0.00026269 -0.069915 -3.9592E-05 0.39396 0.0002231 566.289606716215 70.726 1.122 74.186 73.738 74.86 3.4598 357 112 4 0 0 0 0.0051925 9 16421 16385;16421;16459;16491;16524;16558;16592;16628;16667 139.14 68.005 1 3654500 15406 4869 9884 9890 18844;18845;18846;18847;18848;18849;18850;18851;18852 18845 0.004752073831923553 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MSMS UPN48_class_I_Rep_1 5 566.2904052734375 2 566.289682 1130.56481 NaN NaN NaN NaN NaN NaN NaN 71.463 1 74.929 74.429 75.429 3.466 0 0 0 0.20399 1 16709 16709 16.149 2.2431 1 15407 4869 9884 9890 18853 18853 0.004752073831923553 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MULTI-MSMS UPN48_class_I_Rep_2 6 566.2898559570312 2 566.289682 1130.56481 0.48061 0.00027216 -0.010908 -6.1772E-06 0.4697 0.00026599 566.2896192344909 70.511 1.0913 74.047 73.663 74.754 3.5359 372 118 4 0 0 0 9.6791E-06 11 16377 16303;16305;16341;16377;16413;16447;16484;16515;16551;16577;16595 160.52 93.172 1 3081700 15408 4869 9884 9890 18854;18855;18856;18857;18858;18859;18860;18861;18862;18863;18864 18857 0.004752073831923553 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MSMS UPN48_class_I_Rep_2 6 566.28857421875 2 566.289682 1130.56481 NaN NaN NaN NaN NaN NaN NaN 71.33 1 74.88 74.38 75.38 3.5505 0 0 0 0.085573 1 16635 16635 27.629 2.2295 1 15409 4869 9884 9890 18865 18865 0.004752073831923553 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MSMS UPN48_class_I_Rep_2 6 566.2896118164062 2 566.289682 1130.56481 NaN NaN NaN NaN NaN NaN NaN 71.665 1 75.216 74.716 75.716 3.5505 0 0 0 0.096434 1 16737 16737 25.399 9.5521 1 15410 4869 9884 9890 18866 18866 0.004752073831923553 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MULTI-MSMS UPN48_class_I_Rep_3 7 566.2899169921875 2 566.289682 1130.56481 0.50317 0.00028494 -0.097353 -5.513E-05 0.40582 0.00022981 566.2895826937221 70.475 1.2207 73.993 73.594 74.815 3.5185 352 121 4 0 0 0 0.0064161 9 16324 16210;16252;16287;16324;16360;16427;16447;16464;16542 126.57 65.208 1 3856400 15411 4869 9884 9890 18867;18868;18869;18870;18871;18872;18873;18874;18875 18870 0.004752073831923553 IYPTTYVQF 9 Unmodified _IYPTTYVQF_ 0 0 0 ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM ENSG00000179820|ENST00000391770|MYADM MSMS UPN48_class_I_Rep_3 7 566.327880859375 2 566.289682 1130.56481 NaN NaN NaN NaN NaN NaN NaN 71.685 1 75.212 74.712 75.712 3.5266 0 0 0 0.22485 1 16664 16664 14.838 4.0143 1 15412 4869 9884 9890 18876 18876 0.004752073831923553 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_1 5 512.2794189453125 2 512.279118 1022.54368 0.27076 0.00013871 0.23261 0.00011916 0.50337 0.00025787 512.2791703295504 75.358 0.63657 78.858 78.543 79.179 3.4996 136 63 3 0 0 0 0.0054033 5 17794 17794;17828;17834;17876;17921 78.728 22.551 1 263920 15413 3672 9885 9891 18877;18878;18879;18880;18881 18877 0.03331242074318652 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_2 6 512.279541015625 2 512.279118 1022.54368 0.31826 0.00016304 0.090818 4.6524E-05 0.40907 0.00020956 512.279099209399 75.159 0.48109 78.749 78.457 78.938 3.59 78 53 2 0 0 0 0.0054033 3 17679 17679;17711;17743 78.728 13.493 1 301890 15414 3672 9885 9891 18882;18883;18884 18882 0.03331242074318652 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_2 6 512.2796630859375 2 512.279118 1022.54368 0.31868 0.00016325 -0.40515 -0.00020755 -0.086475 -4.4299E-05 512.2791285535721 75.428 0.13344 79.029 78.955 79.088 3.6009 23 15 2 0 0 0 0.16799 1 17791 17791 23.79 6.8475 1 75690 15415 3672 9885 9891 18885 18885 0.03331242074318652 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_3 7 512.2792358398438 2 512.279118 1022.54368 0.35358 0.00018113 0.062554 3.2045E-05 0.41613 0.00021317 512.2790658119234 75.255 0.65988 78.821 78.471 79.131 3.5659 159 68 3 0 0 0 0.0064763 4 17671 17597;17633;17671;17705 111.29 26.015 1 251550 15416 3672 9885 9891 18886;18887;18888;18889 18888 0.03331242074318652 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 512.279118 1022.54368 0.31837 0.00016309 -0.52564 -0.00026927 -0.20727 -0.00010618 512.2790341453874 75.618 0.031982 79.219 79.198 79.23 3.6012 0.18068 -0.00077049 NaN 78.728 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 26935 15417 3672 9885 9891 0.03331242074318652 IYQANGQPKK 10 Unmodified _IYQANGQPKK_ 0 0 0 L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|35|2|sense L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|35|2|sense L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 573.8009033203125 2 573.81693 1145.61931 NaN NaN NaN NaN NaN NaN NaN 66.813 1 70.321 69.821 70.821 3.5077 0 0 0 0.53105 1 15205 15205 10.824 0 1 15418 14615 9886 9892 18890 18890 0.052322192545943835 IYQDLLYPF 9 Unmodified _IYQDLLYPF_ 0 0 0 REV__L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|121|3|anti-sense REV__L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|121|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.3060913085938 2 586.305332 1170.59611 0.5455 0.00031983 0.18968 0.00011121 0.73518 0.00043104 586.3053349023655 66.245 0.73257 69.753 69.403 70.136 3.5077 108 55 3 0 0 0 0.35081 1 15109 15109 10.824 0 1 194730 + 15419 25512 9887 9893 18891 18891 0.01763780417286398 IYQDVTLKW 9 Unmodified _IYQDVTLKW_ 0 0 0 nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9 nc|ENSG00000122507|Q3SYG4-5|BBS9 nc|ENSG00000122507|Q3SYG4-5|BBS9 MSMS UPN48_class_I_Rep_1 5 583.31640625 2 583.316232 1164.61791 NaN NaN NaN NaN NaN NaN NaN 59.908 1 63.388 62.888 63.888 3.4801 0 0 0 0.081356 1 13205 13205 28.495 3.5035 1 15420 2389 9888 9894 18892 18892 0.042185851658587126 IYQDVTLKW 9 Unmodified _IYQDVTLKW_ 0 0 0 nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9 nc|ENSG00000122507|Q3SYG4-5|BBS9 nc|ENSG00000122507|Q3SYG4-5|BBS9 MSMS UPN48_class_I_Rep_2 6 583.3173828125 2 583.316232 1164.61791 NaN NaN NaN NaN NaN NaN NaN 59.829 1 63.316 62.816 63.816 3.4868 0 0 0 0.18866 1 13159 13159 17.113 3.2068 1 15421 2389 9888 9894 18893 18893 0.042185851658587126 IYQDVTLKW 9 Unmodified _IYQDVTLKW_ 0 0 0 nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9 nc|ENSG00000122507|Q3SYG4-5|BBS9 nc|ENSG00000122507|Q3SYG4-5|BBS9 MSMS UPN48_class_I_Rep_3 7 583.3162231445312 2 583.316232 1164.61791 NaN NaN NaN NaN NaN NaN NaN 59.77 1 63.287 62.787 63.787 3.5169 0 0 0 0.27207 1 13073 13073 12.241 0.74595 1 15422 2389 9888 9894 18894 18894 0.042185851658587126 IYQEDRFN 8 Unmodified _IYQEDRFN_ 0 0 0 REV__HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|24|2|sense REV__HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|24|2|sense MSMS UPN47_class_I_Rep_3 4 542.756591796875 2 542.756538 1083.49852 NaN NaN NaN NaN NaN NaN NaN 31.496 1 34.795 34.295 35.295 3.2991 0 0 0 0.40643 1 5375 5375 2.0598 0.21551 1 + 15423 23984 9889 9895 18895 18895 -0.0398860845884883 IYQGYLTLGF 10 Unmodified _IYQGYLTLGF_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS UPN48_class_I_Rep_2 6 587.8106689453125 2 587.810782 1173.60701 0.56917 0.00033456 -0.13859 -8.1465E-05 0.43058 0.0002531 587.8104931521912 58.814 0.70863 62.312 62.057 62.766 3.4987 108 43 3 0 0 0 0.44401 1 12781 12781 16.149 0.90062 1 509990 + 15424 17914 9890 9896 18896 18896 0.027151827915531612 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_1 5 555.8135986328125 2 555.813325 1109.6121 0.63614 0.00035358 -0.19615 -0.00010902 0.43999 0.00024455 555.8131790175961 61.748 0.58089 65.216 64.996 65.577 3.4678 92 52 2 0 0 0 0.081756 4 13758 13718;13758;13799;13837 38.176 10.547 1 176000 15425 2065 9891 9897 18897;18898;18899;18900 18898 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_2 6 556.3148803710938 2 555.813325 1109.6121 0.55206 0.00030684 -0.19557 -0.0001087 0.35649 0.00019814 555.8132887149129 61.715 0.53389 65.188 64.954 65.488 3.4738 74 41 2 0 0 0 0.022868 3 13719 13678;13719;13757 61.602 21.652 1 203180 15426 2065 9891 9897 18901;18902;18903 18902 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_3 7 556.3152465820312 2 555.813325 1109.6121 0.40151 0.00022316 -0.35738 -0.00019864 0.044127 2.4526E-05 555.8132496646067 61.338 0.1032 64.851 64.758 64.861 3.5128 11 7 2 0 0 0 0.26468 1 13541 13541 16.149 0.30192 1 85403 15427 2065 9891 9897 18904 18904 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN48_class_I_Rep_3 7 556.3154296875 2 555.813325 1109.6121 0.40431 0.00022472 0.067391 3.7457E-05 0.4717 0.00026218 555.8134499658147 61.503 0.49511 65.016 64.869 65.364 3.5128 68 42 2 0 0 0 0.053261 2 13622 13582;13622 47.594 14.809 1 178740 15428 2065 9891 9897 18905;18906 18906 0.061674866541807205 IYQLQKRQ 8 Unmodified _IYQLQKRQ_ 0 0 0 REV__ENST00000451446.1_1_13:24696206-24696383:-|nuORF REV__ENST00000451446.1_1_13:24696206-24696383:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 538.8145751953125 2 538.81419 1075.61383 0.42755 0.00023037 -0.1569 -8.4537E-05 0.27066 0.00014583 538.814123603774 55.53 0.78532 59.038 58.706 59.491 3.5082 103 52 3 0 0 0 0.82752 1 11975 11975 2.3027 2.3027 1 303210 + 15429 22390 9892 9898 18907 18907 0.07904540462800469 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN48_class_I_Rep_1 5 573.337890625 2 573.337498 1144.66044 0.42244 0.0002422 0.212 0.00012154 0.63443 0.00036374 573.3375420863744 41.314 0.61952 44.82 44.416 45.036 3.506 62 53 2 0 0 0 0.32682 1 7516 7516 12.241 5.1389 1 135680 15430 4272 9893 9899 18908 18908 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN48_class_I_Rep_2 6 573.3375854492188 2 573.337498 1144.66044 0.4258 0.00024413 -0.11766 -6.7457E-05 0.30815 0.00017667 573.3374124539421 40.847 0.58568 44.598 44.332 44.917 3.7508 80 57 3 0 0 0 0.279 1 7394 7394 15.248 6.5031 1 163530 15431 4272 9893 9899 18909 18909 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN48_class_I_Rep_3 7 573.3380126953125 2 573.337498 1144.66044 0.38398 0.00022015 0.27878 0.00015983 0.66276 0.00037999 573.3376016685545 41.1 0.47429 44.746 44.359 44.833 3.6458 62 47 2 0 0 0 0.279 3 7347 7347;7384;7402 15.248 6.5031 1 115970 15432 4272 9893 9899 18910;18911;18912 18910 0.0938998029407685 IYQRNRYKKQP 11 Unmodified _IYQRNRYKKQP_ 0 0 0 L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|84|2|sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|84|2|sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|84|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 498.30908203125 3 498.616037 1492.82628 0.17613 8.7819E-05 -0.90081 -0.00044916 -0.72469 -0.00036134 498.61547369552227 45.33 0.24868 48.967 48.799 49.048 3.6369 29 18 2 0 0 0 22.551 1 8622 8622 0.50596 0.41111 1 81312 15433 9759 9894 9900 18913 18913 0.09958006802776254 IYQYIQSRF 9 Unmodified _IYQYIQSRF_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|4|intron;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|1|intron;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|2|intron;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|3|intron;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS UPN48_class_I_Rep_1 5 609.319580078125 2 609.319306 1216.62406 0.44066 0.0002685 -0.21695 -0.00013219 0.22371 0.00013631 609.3191618362071 52.509 0.62795 56.031 55.755 56.383 3.5214 101 56 2 0 0 0 0.039218 1 10903 10903 53.317 7.5667 1 226760 15434 3768 9895 9901 18914 18914 0.024411033973592566 IYQYIQSRF 9 Unmodified _IYQYIQSRF_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|4|intron;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|1|intron;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|2|intron;ENSG00000157540.22,DYRK1A,chr21,+,I17.1,37488864,37490174|35|9.22|3|intron;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MATCH UPN48_class_I_Rep_2 6 2 609.319306 1216.62406 0.52472 0.00031972 -0.4124 -0.00025128 0.11232 6.8442E-05 609.3189808790921 52.418 0.56886 56.057 55.776 56.345 3.639 0.034215 -9.9779E-05 NaN 53.317 87 49 2 NaN NaN NaN NaN 0 NaN NaN 0 231100 15435 3768 9895 9901 0.024411033973592566 IYREIAEII 9 Unmodified _IYREIAEII_ 0 0 0 L1MC3_dup13020|chr22:46583224-46584598:-|3.017674663068901|0.092704540238304|5.02|151.0|45|1|anti-sense L1MC3_dup13020|chr22:46583224-46584598:-|3.017674663068901|0.092704540238304|5.02|151.0|45|1|anti-sense L1MC3_dup13020|chr22:46583224-46584598:-|3.017674663068901|0.092704540238304|5.02|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3242797851562 2 560.324057 1118.63356 0.48757 0.0002732 0.02588 1.4501E-05 0.51345 0.0002877 560.3238821781297 70.287 0.26071 73.823 73.702 73.963 3.5359 48 25 3 0 0 0 0.36392 1 16334 16334 10.074 0 1 234490 15436 11316 9896 9902 18915 18915 0.07898871682914432 IYRIAQKQIRR 11 Unmodified _IYRIAQKQIRR_ 0 0 0 ENSG00000184845|ENST00000393752|DRD1 ENSG00000184845|ENST00000393752|DRD1 ENSG00000184845|ENST00000393752|DRD1 MSMS UPN48_class_I_Rep_1 5 482.29949951171875 3 482.30016 1443.87865 NaN NaN NaN NaN NaN NaN NaN 104.53 1 108.16 107.66 108.66 3.6247 0 0 0 0.38417 1 25184 25184 6.6235 2.2173 1 15437 5066 9897 9903 18916 18916 0.174465899363895 IYRSTFNSF 9 Unmodified _IYRSTFNSF_ 0 0 0 REV__L1MB2_dup380|chr1:158833314-158834229:-|1.1649422888884464|0.0391786438665882|4.89|150.0|8|1|sense REV__L1MB2_dup380|chr1:158833314-158834229:-|1.1649422888884464|0.0391786438665882|4.89|150.0|8|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 567.2977905273438 2 567.782556 1133.55056 0.44911 0.000255 -0.39932 -0.00022673 0.049791 2.827E-05 567.7822996271387 60.925 0.17605 64.438 64.343 64.519 3.5128 28 15 2 0 0 0 0.11309 1 13403 13403 13.906 3.0821 1 157310 + 15438 25726 9898 9904 18917 18917 -0.01087445045095592 IYRYIFHVL 9 Unmodified _IYRYIFHVL_ 0 0 0 L1M5_dup22510|chr7:18382646-18383216:+|1.1256102432860988|0.007286698511733|7.27|148.0|42|3|anti-sense L1M5_dup22510|chr7:18382646-18383216:+|1.1256102432860988|0.007286698511733|7.27|148.0|42|3|anti-sense L1M5_dup22510|chr7:18382646-18383216:+|1.1256102432860988|0.007286698511733|7.27|148.0|42|3|anti-sense MSMS UPN46_class_I_Rep_3 1 612.35107421875 2 612.350409 1222.68626 NaN NaN NaN NaN NaN NaN NaN 52.591 1 52.591 52.091 53.091 0 0 0 0 0.4007 1 11252 11252 0.52476 0 1 15439 9113 9899 9905 18918 18918 0.08382874536368945 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN48_class_I_Rep_1 5 504.78424072265625 2 504.784233 1007.55391 0.24941 0.0001259 0.095403 4.8158E-05 0.34481 0.00017406 504.78417329847116 72.282 0.76809 75.755 75.419 76.187 3.4732 140 68 3 0 0 0 0.056917 1 17000 17000 46.021 8.047 1 564150 15440 1187 9900 9906 18919 18919 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN48_class_I_Rep_3 7 504.7842712402344 2 504.784233 1007.55391 0.32234 0.00016271 -0.0039984 -2.0183E-06 0.31834 0.00016069 504.78412168890355 72.068 0.72694 75.595 75.283 76.01 3.5266 194 73 3 0 0 0 0.0068038 2 16764 16764;16802 104.8 26.815 1 638790 15441 1187 9900 9906 18920;18921 18920 0.050438050089155695 IYSFHTLSF 9 Unmodified _IYSFHTLSF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS UPN48_class_I_Rep_1 5 558.2839965820312 2 557.782025 1113.5495 0.55321 0.00030857 -0.25955 -0.00014477 0.29365 0.0001638 557.781841458554 66.411 0.2917 69.863 69.693 69.984 3.4516 26 18 2 0 0 0 0.26948 1 15183 15183 15.847 1.9411 1 115040 15442 1199 9901 9907 18922 18922 -0.0027365941400603333 IYSFHTLSF 9 Unmodified _IYSFHTLSF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS UPN48_class_I_Rep_1 5 557.7822875976562 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 66.431 1 69.883 69.383 70.383 3.4516 0 0 0 0.052575 1 15191 15191 36.044 0 1 15443 1199 9901 9907 18923 18923 -0.0027365941400603333 IYSFHTLSF 9 Unmodified _IYSFHTLSF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS UPN48_class_I_Rep_1 5 557.7820434570312 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 66.605 1 70.057 69.557 70.557 3.4516 0 0 0 0.11494 1 15244 15244 21.747 0 1 15444 1199 9901 9907 18924 18924 -0.0027365941400603333 IYSFHTLSF 9 Unmodified _IYSFHTLSF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS UPN48_class_I_Rep_2 6 557.7818603515625 2 557.782025 1113.5495 0.51954 0.00028979 -0.27884 -0.00015553 0.2407 0.00013426 557.7818315699086 66.258 0.37057 69.745 69.54 69.911 3.4866 47 27 3 0 0 0 0.18929 1 15110 15110 21.747 2.4897 1 111830 15445 1199 9901 9907 18925 18925 -0.0027365941400603333 IYSFHTLSF 9 Unmodified _IYSFHTLSF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS UPN48_class_I_Rep_3 7 557.782470703125 2 557.782025 1113.5495 0.45049 0.00025127 -0.079681 -4.4445E-05 0.3708 0.00020683 557.7817914712796 66.113 0.48476 69.621 69.452 69.937 3.5077 58 36 2 0 0 0 0.045397 3 14964 14964;15006;15045 50.855 14.728 1 96598 15446 1199 9901 9907 18926;18927;18928 18926 -0.0027365941400603333 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS UPN48_class_I_Rep_1 5 581.3009033203125 2 581.300581 1160.58661 0.4514 0.0002624 -0.025188 -1.4642E-05 0.42621 0.00024775 581.300484436969 70.662 0.99959 74.122 73.66 74.659 3.4598 279 100 4 0 0 0 0.0050147 5 16412 16374;16412;16450;16484;16517 103.42 47.145 1 1412200 15447 4743 9902 9908 18929;18930;18931;18932;18933 18930 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS UPN48_class_I_Rep_2 6 581.30078125 2 581.300581 1160.58661 0.47216 0.00027447 0.02376 1.3811E-05 0.49592 0.00028828 581.3004989082207 70.455 0.82868 73.99 73.582 74.411 3.5359 261 87 4 0 0 0 0.006303 6 16465 16314;16326;16362;16397;16430;16465 145.13 77.049 1 1581400 15448 4743 9902 9908 18934;18935;18936;18937;18938;18939 18939 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MSMS UPN48_class_I_Rep_2 6 581.3007202148438 2 581.300581 1160.58661 NaN NaN NaN NaN NaN NaN NaN 70.973 1 74.508 74.008 75.008 3.5359 0 0 0 0.026535 1 16532 16532 49.554 2.6334 1 15449 4743 9902 9908 18940 18940 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS UPN48_class_I_Rep_3 7 581.30078125 2 581.300581 1160.58661 0.54848 0.00031883 -0.12405 -7.2112E-05 0.42443 0.00024672 581.3004070935175 70.423 0.8342 73.941 73.53 74.364 3.5185 244 79 4 0 0 0 2.6985E-05 7 16296 16182;16185;16224;16263;16296;16330;16364 157.8 85.873 1 1992600 15450 4743 9902 9908 18941;18942;18943;18944;18945;18946;18947 18945 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS UPN48_class_I_Rep_3 7 581.3001708984375 2 581.300581 1160.58661 0.54707 0.00031801 -0.34905 -0.0002029 0.19802 0.00011511 581.3003176862024 70.826 0.23946 74.344 74.286 74.526 3.5185 37 25 2 0 0 0 0.062142 2 16403 16403;16451 43.772 11.467 1 180350 15451 4743 9902 9908 18948;18949 18948 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 581.300581 1160.58661 0.54707 0.00031801 -0.34905 -0.0002029 0.19802 0.00011511 581.3003176862024 70.826 0.23946 74.344 74.286 74.526 3.5185 0.19223 -0.00040108 NaN 145.13 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 180350 15452 4743 9902 9908 0.012740121317847297 IYSIFVCVY 9 Unmodified _IYSIFVCVY_ 0 0 0 REV__L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|37|2|anti-sense REV__L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_2 6 553.7835693359375 2 553.783179 1105.5518 NaN NaN NaN NaN NaN NaN NaN 78.828 1 82.461 81.961 82.961 3.6331 0 0 0 0.38639 1 18707 18707 3.9444 0 1 + 15453 25741 9903 9909 18950 18950 0.0032505299943750288 IYSIFVCVY 9 Unmodified _IYSIFVCVY_ 0 0 0 REV__L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|37|2|anti-sense REV__L1MB2_dup5249|chr10:38099143-38099933:-|1.112108091038304|0.049393877457001|4.49|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_2 6 553.7833862304688 2 553.783179 1105.5518 NaN NaN NaN NaN NaN NaN NaN 78.885 1 82.518 82.018 83.018 3.6331 0 0 0 0.38639 1 18724 18724 3.9444 1.0552 1 + 15454 25741 9903 9909 18951 18951 0.0032505299943750288 IYSQLETLI 9 Unmodified _IYSQLETLI_ 0 0 0 ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP ENST00000475396.5_1_2:220462865-220474366:+|nuORF ENST00000475396.5_1_2:220462865-220474366:+|nuORF MSMS UPN48_class_I_Rep_1 5 540.3031005859375 2 540.30279 1078.59103 NaN NaN NaN NaN NaN NaN NaN 76.871 1 80.381 79.881 80.881 3.5102 0 0 0 0.3377 1 18271 18271 8.7454 0 1 15455 3362 9904 9910 18952 18952 0.054874765546856 IYSTAFDYF 9 Unmodified _IYSTAFDYF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000241973|P42356-2|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS UPN48_class_I_Rep_1 5 563.7584838867188 2 563.758215 1125.50188 0.46312 0.00026109 0.052746 2.9736E-05 0.51586 0.00029082 563.7581566779357 78.075 0.79152 81.597 81.235 82.026 3.5221 225 89 4 0 0 0 0.0064938 5 18591 18554;18591;18623;18655;18687 120.45 87.205 1 771920 15456 5711 9905 9911 18953;18954;18955;18956;18957 18954 -0.05585358404869112 IYSTAFDYF 9 Unmodified _IYSTAFDYF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000241973|P42356-2|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS UPN48_class_I_Rep_2 6 563.7582397460938 2 563.758215 1125.50188 0.48613 0.00027406 -0.028892 -1.6288E-05 0.45724 0.00025777 563.75813673494 77.955 0.87837 81.578 81.262 82.14 3.6223 244 95 3 0 0 0 3.7413E-05 5 18458 18419;18458;18496;18531;18561 156.16 122.05 1 1029900 15457 5711 9905 9911 18958;18959;18960;18961;18962 18959 -0.05585358404869112 IYSTAFDYF 9 Unmodified _IYSTAFDYF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000241973|P42356-2|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MSMS UPN48_class_I_Rep_2 6 563.758056640625 2 563.758215 1125.50188 NaN NaN NaN NaN NaN NaN NaN 78.821 1 82.454 81.954 82.954 3.6331 0 0 0 0.37692 1 18705 18705 6.2058 1.8765 1 15458 5711 9905 9911 18963 18963 -0.05585358404869112 IYSTAFDYF 9 Unmodified _IYSTAFDYF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000241973|P42356-2|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS UPN48_class_I_Rep_3 7 563.7584838867188 2 563.758215 1125.50188 0.47518 0.00026789 0.03942 2.2223E-05 0.5146 0.00029011 563.7581710032822 77.936 0.89305 81.558 81.242 82.135 3.6216 272 100 4 0 0 0 0.0064938 5 18517 18376;18416;18452;18487;18517 133.7 105.22 1 1054100 15459 5711 9905 9911 18964;18965;18966;18967;18968 18968 -0.05585358404869112 IYSTLHWY 8 Unmodified _IYSTLHWY_ 0 0 0 L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|83|1|anti-sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|83|1|anti-sense L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|83|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.7925415039062 2 541.768917 1081.52328 0.48374 0.00026207 0.037224 2.0167E-05 0.52096 0.00028224 541.7688808700987 59.004 0.91629 62.527 62.097 63.013 3.5231 146 61 3 0 0 0 0.82752 1 12707 12707 5.2307 0 1 828160 15460 12053 9906 9912 18969 18969 -0.014219285854778718 IYSWFGSIAG 10 Unmodified _IYSWFGSIAG_ 0 0 0 L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|106|1|anti-sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|106|1|anti-sense L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|106|1|anti-sense MSMS UPN48_class_I_Rep_1 5 551.2581787109375 2 550.7742 1099.53385 NaN NaN NaN NaN NaN NaN NaN 61.452 1 64.92 64.42 65.42 3.4678 0 0 0 0.53105 1 13672 13672 3.2813 0.97858 1 15461 15386 9907 9913 18970 18970 -0.01193945931026974 IYSWLSITK 9 Unmodified _IYSWLSITK_ 0 0 0 REV__nc|ENSG00000063601|Q13613|MTMR1 REV__nc|ENSG00000063601|Q13613|MTMR1 MULTI-MSMS UPN48_class_I_Rep_2 6 556.8031616210938 2 555.813325 1109.6121 0.55206 0.00030684 -0.19557 -0.0001087 0.35649 0.00019814 555.8132887149129 61.715 0.53389 65.188 64.954 65.488 3.4738 74 41 2 0 0 0 0.47197 1 13689 13689 3.5965 0.8613 1 203180 + 15462 17733 9908 9914 18971 18971 0.061674866541807205 IYTCTTVNFV 10 Unmodified _IYTCTTVNFV_ 0 0 0 Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|68|1|anti-sense Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|68|1|anti-sense Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_2 6 580.7890014648438 2 580.78645 1159.55835 NaN NaN NaN NaN NaN NaN NaN 73.082 1 76.647 76.147 77.147 3.5645 0 0 0 0.53105 1 17145 17145 3.5965 0.60125 1 15463 33325 9909 9915 18972 18972 -0.015050538398554636 IYTCTTVNFV 10 Unmodified _IYTCTTVNFV_ 0 0 0 Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|68|1|anti-sense Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|68|1|anti-sense Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_2 6 580.78759765625 2 580.78645 1159.55835 NaN NaN NaN NaN NaN NaN NaN 73.191 1 76.756 76.256 77.256 3.5645 0 0 0 0.53105 1 17176 17176 1.4819 0.15237 1 15464 33325 9909 9915 18973 18973 -0.015050538398554636 IYTFPHASF 9 Unmodified _IYTFPHASF_ 0 0 0 nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000111801|O00478-2|BTN3A3 nc|ENSG00000111801|O00478-2|BTN3A3 MULTI-MSMS UPN48_class_I_Rep_1 5 541.7689819335938 2 541.768917 1081.52328 0.53183 0.00028813 0.034189 1.8522E-05 0.56602 0.00030665 541.7688256964776 59.089 0.91806 62.569 62.212 63.13 3.4801 149 59 3 0 0 0 0.0070613 2 12906 12906;12947 115.69 26.788 1 791060 15465 1988 9910 9916 18974;18975 18974 -0.014219285855006092 IYTFPHASF 9 Unmodified _IYTFPHASF_ 0 0 0 nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000111801|O00478-2|BTN3A3 nc|ENSG00000111801|O00478-2|BTN3A3 MULTI-MSMS UPN48_class_I_Rep_2 6 541.7689819335938 2 541.768917 1081.52328 0.56581 0.00030654 -0.047499 -2.5733E-05 0.51831 0.0002808 541.7687807943552 59.135 0.92184 62.633 62.218 63.139 3.4987 160 61 3 0 0 0 0.0064938 3 12927 12841;12883;12927 115.69 26.788 1 800920 15466 1988 9910 9916 18976;18977;18978 18978 -0.014219285855006092 IYTFPHASF 9 Unmodified _IYTFPHASF_ 0 0 0 nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000111801|O00478-2|BTN3A3 nc|ENSG00000111801|O00478-2|BTN3A3 MULTI-MSMS UPN48_class_I_Rep_3 7 541.7692260742188 2 541.768917 1081.52328 0.48374 0.00026207 0.037224 2.0167E-05 0.52096 0.00028224 541.7688808700987 59.004 0.91629 62.527 62.097 63.013 3.5231 146 61 3 0 0 0 0.0059326 2 12801 12765;12801 128.37 27.994 1 828160 15467 1988 9910 9916 18979;18980 18980 -0.014219285855006092 IYTFSNVTF 9 Unmodified _IYTFSNVTF_ 0 0 0 ENSG00000124557|ENST00000684113|BTN1A1 ENSG00000124557|ENST00000684113|BTN1A1 ENSG00000124557|ENST00000684113|BTN1A1 MULTI-MSMS UPN48_class_I_Rep_3 7 546.2750244140625 2 546.274032 1090.53351 0.38983 0.00021295 -0.015407 -8.4167E-06 0.37442 0.00020454 546.2740697391589 46.518 0.56422 50.154 49.884 50.448 3.6363 46 33 2 0 0 0 0.36392 1 8972 8972 10.074 0 1 147760 15468 2472 9911 9917 18981 18981 -0.008133656509016873 IYTQHNRV 8 Unmodified _IYTQHNRV_ 0 0 0 L1ME3A_dup14379|chr18:62316477-62317621:+|1.5381085810418549|0.0151204346298804|6.67|151.0|32|2|sense L1ME3A_dup14379|chr18:62316477-62317621:+|1.5381085810418549|0.0151204346298804|6.67|151.0|32|2|sense L1ME3A_dup14379|chr18:62316477-62317621:+|1.5381085810418549|0.0151204346298804|6.67|151.0|32|2|sense MSMS UPN48_class_I_Rep_3 7 515.7777099609375 2 515.775065 1029.53558 NaN NaN NaN NaN NaN NaN NaN 72.059 1 75.585 75.085 76.085 3.5266 0 0 0 0.39819 1 16773 16773 8.5933 2.2392 1 15469 12646 9912 9918 18982 18982 0.021991078775499773 IYTQMETCY 9 Unmodified _IYTQMETCY_ 0 0 0 REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|17|3|sense REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|17|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 576.7822875976562 2 576.241018 1150.46748 0.4478 0.00025804 -0.0016677 -9.61E-07 0.44614 0.00025708 576.2410012251269 62.136 0.33836 65.396 65.169 65.507 3.2594 31 21 2 0 0 0 0.11959 1 14636 14636 7.9102 0 1 70254 + 15470 28179 9913 9919 18983 18983 -0.10173265879643623 IYTQMETCY 9 Unmodified _IYTQMETCY_ 0 0 0 REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|17|3|sense REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|17|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 576.241018 1150.46748 0.37968 0.00021879 0.1088 6.2692E-05 0.48847 0.00028148 576.2408676586151 61.964 0.39391 65.332 65.067 65.461 3.3681 -0.017011 0.00017264 NaN 7.9102 34 28 2 NaN NaN NaN NaN 0 NaN NaN 0 102880 + 15471 28179 9913 9919 -0.10173265879643623 IYTQMETCY 9 Unmodified _IYTQMETCY_ 0 0 0 REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|17|3|sense REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|17|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 576.241018 1150.46748 0.40063 0.00023086 -0.14462 -8.3338E-05 0.25601 0.00014752 576.2408838869387 62.153 0.24644 65.32 65.226 65.472 3.1667 -0.029562 -0.00011942 NaN 7.9102 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 68346 + 15472 28179 9913 9919 -0.10173265879643623 IYTRLLPAL 9 Unmodified _IYTRLLPAL_ 0 0 0 nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1 nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-2|ACY1 MULTI-MSMS UPN48_class_I_Rep_2 6 530.3314208984375 2 530.331685 1058.64882 0.44007 0.00023338 -0.17032 -9.0328E-05 0.26975 0.00014306 530.3314690451301 66.631 0.55791 70.118 70.023 70.581 3.4866 42 34 2 0 0 0 0.37599 1 15271 15271 9.3831 2.0939 1 114840 15473 5725 9914 9920 18984 18984 0.12183783270734239 IYTSWLLEF 9 Unmodified _IYTSWLLEF_ 0 0 0 REV__Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|1|1|sense REV__Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3057861328125 2 586.305332 1170.59611 0.4898 0.00028717 0.1058 6.2034E-05 0.59561 0.00034921 586.3053583974272 66.583 0.62973 70.035 69.724 70.354 3.4516 90 41 3 0 0 0 0.40174 1 15325 15325 7.9102 0.62092 1 233290 + 15474 32700 9915 9921 18985 18985 0.01763780417286398 IYTSWLLEF 9 Unmodified _IYTSWLLEF_ 0 0 0 REV__Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|1|1|sense REV__Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 586.3065795898438 2 586.305332 1170.59611 0.503 0.00029491 0.026073 1.5287E-05 0.52907 0.0003102 586.3052578568232 66.328 0.63663 69.815 69.553 70.19 3.4866 85 47 2 0 0 0 0.40174 2 15090 15090;15247 7.9102 0.62092 1 231680 + 15475 32700 9915 9921 18986;18987 18986 0.01763780417286398 IYTYMHWS 8 Unmodified _IYTYMHWS_ 0 0 0 REV__L1PA5_dup8778|chr12:57400016-57400603:+|1.3659483838665938|0.0204772284670258|6.06|151.0|15|2|sense REV__L1PA5_dup8778|chr12:57400016-57400603:+|1.3659483838665938|0.0204772284670258|6.06|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 550.7494506835938 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 23.051 1 26.694 26.194 27.194 3.6432 0 0 0 0.40604 1 2449 2449 2.5775 0.27475 1 + 15476 29809 9916 9922 18988 18988 -0.06605861354273657 IYTYMHWS 8 Unmodified _IYTYMHWS_ 0 0 0 REV__L1PA5_dup8778|chr12:57400016-57400603:+|1.3659483838665938|0.0204772284670258|6.06|151.0|15|2|sense REV__L1PA5_dup8778|chr12:57400016-57400603:+|1.3659483838665938|0.0204772284670258|6.06|151.0|15|2|sense MSMS UPN48_class_I_Rep_3 7 550.7474975585938 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 20.468 1 24.135 23.635 24.635 3.6667 0 0 0 0.40604 1 1746 1746 2.5775 0.27475 1 + 15477 29809 9916 9922 18989 18989 -0.06605861354273657 IYVGHLVT 8 Unmodified _IYVGHLVT_ 0 0 0 REV__L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|117|2|anti-sense REV__L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|117|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 451.26043701171875 2 451.260728 900.506903 -0.54577 -0.00024628 0.2856 0.00012888 -0.26016 -0.0001174 451.2607151205079 39.642 0.42835 43.02 42.736 43.165 3.3785 34 26 2 0 0 0 0.82752 1 7848 7848 2.8892 0 1 45632 + 15478 29321 9917 9923 18990 18990 0.05266990248446746 IYVGHLVT 8 Unmodified _IYVGHLVT_ 0 0 0 REV__L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|117|2|anti-sense REV__L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|117|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.2612609863281 2 451.260728 900.506903 -0.71003 -0.00032041 0.34447 0.00015545 -0.36556 -0.00016496 451.26088297162227 39.821 0.43924 43.058 42.789 43.228 3.2372 41 29 2 0 0 0 0.82752 1 7946 7946 6.3541 0 1 37633 + 15479 29321 9917 9923 18991 18991 0.05266990248446746 IYVGVIYGF 9 Unmodified _IYVGVIYGF_ 0 0 0 REV__L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|61|2|anti-sense REV__L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7823486328125 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 59.552 1 63.039 62.539 63.539 3.4868 0 0 0 0.381 1 13074 13074 5.2307 0 1 + 15480 25049 9918 9924 18992 18992 0.039924300797110845 IYVHDIYWF 9 Unmodified _IYVHDIYWF_ 0 0 0 L1ME1_dup8015|chr4:73195037-73195513:-|1.6370339645668093|0.0106236888046213|7.27|151.0|23|1|anti-sense L1ME1_dup8015|chr4:73195037-73195513:-|1.6370339645668093|0.0106236888046213|7.27|151.0|23|1|anti-sense L1ME1_dup8015|chr4:73195037-73195513:-|1.6370339645668093|0.0106236888046213|7.27|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_3 4 628.310546875 2 628.310949 1254.60735 NaN NaN NaN NaN NaN NaN NaN 58.844 1 62.01 61.51 62.51 3.1658 0 0 0 0.39428 1 13704 13704 2.0598 0 1 15481 12441 9919 9925 18993 18993 -0.009773974886002179 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENST00000570062.1_1_15:42476637-42483338:-|nuORF;ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENST00000570062.1_1_15:42476637-42483338:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 560.8056640625 2 560.8055 1119.59645 0.49234 0.00027611 -0.22232 -0.00012468 0.27002 0.00015143 560.8052587121884 72.367 1.055 75.84 75.429 76.484 3.4732 247 86 4 0 0 0 0.0042631 8 16989 16882;16918;16955;16989;17028;17067;17110;17152 147.83 77.116 1 1302400 15482 4271 9920 9926 18994;18995;18996;18997;18998;18999;19000;19001 18997 0.04143200137127678 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENST00000570062.1_1_15:42476637-42483338:-|nuORF;ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENST00000570062.1_1_15:42476637-42483338:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 560.8055419921875 2 560.8055 1119.59645 0.48626 0.0002727 -0.1815 -0.00010179 0.30476 0.00017091 560.8053014958236 72.262 1.1385 75.827 75.378 76.517 3.5645 280 109 4 0 0 0 0.005134 6 16830 16793;16830;16860;16893;16929;16965 179.23 101.25 1 1879000 15483 4271 9920 9926 19002;19003;19004;19005;19006;19007 19003 0.04143200137127678 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENST00000570062.1_1_15:42476637-42483338:-|nuORF;ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENST00000570062.1_1_15:42476637-42483338:-|nuORF MSMS UPN48_class_I_Rep_2 6 560.8055419921875 2 560.8055 1119.59645 NaN NaN NaN NaN NaN NaN NaN 72.608 1 76.173 75.673 76.673 3.5645 0 0 0 0.089203 1 17004 17004 26.884 11.036 1 15484 4271 9920 9926 19008 19008 0.04143200137127678 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENST00000570062.1_1_15:42476637-42483338:-|nuORF;ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENST00000570062.1_1_15:42476637-42483338:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 560.8055 1119.59645 0.47571 0.00026678 -0.22038 -0.00012359 0.25533 0.00014319 560.8052916668881 72.174 1.2006 75.7 75.283 76.484 3.5266 -0.088566 -1.3642E-05 NaN 147.83 287 111 4 NaN NaN NaN NaN 0 NaN NaN 0 1975300 15485 4271 9920 9926 0.04143200137127678 IYVIPQPHF 9 Unmodified _IYVIPQPHF_ 0 0 0 nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1 nc|ENSG00000137812|Q8NG31-3|KNL1 nc|ENSG00000137812|Q8NG31-3|KNL1 MULTI-SECPEP UPN48_class_I_Rep_3 7 557.78955078125 2 557.30821 1112.60187 0.43582 0.00024288 -0.64524 -0.0003596 -0.20942 -0.00011671 557.3075968745327 64.578 0.47124 68.086 68.019 68.49 3.5083 55 39 2 0 0 0 0.12281 1 14645 14645 4.3292 0.38484 1 128530 15486 3042 9921 9927 19009 19009 0.05006923719588485 IYVISAETF 9 Unmodified _IYVISAETF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS UPN48_class_I_Rep_1 5 521.7763061523438 2 521.776408 1041.53826 0.32084 0.00016741 -0.083153 -4.3387E-05 0.23769 0.00012402 521.7762305926132 71.979 0.63444 75.453 75.174 75.808 3.4732 129 59 3 0 0 0 0.006669 2 16861 16861;16905 125.62 54.909 1 271310 15487 2182 9922 9928 19010;19011 19010 0.019155184918417945 IYVISAETF 9 Unmodified _IYVISAETF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS UPN48_class_I_Rep_3 7 521.7763671875 2 521.776408 1041.53826 0.45991 0.00023997 -0.29999 -0.00015653 0.15992 8.3442E-05 521.7761467130593 71.833 0.66244 75.359 75.052 75.714 3.5266 140 65 3 0 0 0 0.0064938 2 16678 16678;16726 112.59 52.204 1 307610 15488 2182 9922 9928 19012;19013 19012 0.019155184918417945 IYVLTPHYI 9 Unmodified _IYVLTPHYI_ 0 0 0 REV__L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense REV__L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.8157958984375 2 559.815867 1117.61718 0.45997 0.0002575 -0.061686 -3.4533E-05 0.39828 0.00022297 559.8157244838847 76.403 1.0622 79.661 79.11 80.172 3.2573 245 107 3 0 0 0 0.23311 1 18992 18992 18.135 0 1 251710 + 15489 25479 9923 9929 19014 19014 0.06307790516802925 IYWEETPHQ 9 Unmodified _IYWEETPHQ_ 0 0 0 REV__L1MC1_dup8681|chr10:63506598-63507362:-|1.1083981677439356|0.0155044858645572|6.16|151.0|36|2|anti-sense REV__L1MC1_dup8681|chr10:63506598-63507362:-|1.1083981677439356|0.0155044858645572|6.16|151.0|36|2|anti-sense MSMS UPN47_class_I_Rep_2 3 601.7794799804688 2 601.77747 1201.54039 NaN NaN NaN NaN NaN NaN NaN 39.128 1 42.507 42.007 43.007 3.3785 0 0 0 0.38784 1 7650 7650 3.5965 0.8613 1 + 15490 26605 9924 9930 19015 19015 -0.05232052770338669 IYWMQKIW 8 Unmodified _IYWMQKIW_ 0 0 0 REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|104|3|sense REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|104|3|sense MSMS UPN47_class_I_Rep_2 3 584.7679443359375 2 584.304613 1166.59467 NaN NaN NaN NaN NaN NaN NaN 27.995 1 31.493 30.993 31.993 3.4986 0 0 0 0.40738 1 4282 4282 0.79363 0 1 + 15491 29700 9925 9931 19016 19016 0.018038678475477354 IYWMYRFFTYK 11 Unmodified _IYWMYRFFTYK_ 0 0 0 REV__L1ME3A_dup3665|chr3:196045693-196046261:-|1.0678659403562782|0.0672329823279773|3.99|151.0|26|3|sense REV__L1ME3A_dup3665|chr3:196045693-196046261:-|1.0678659403562782|0.0672329823279773|3.99|151.0|26|3|sense MSMS UPN48_class_I_Rep_1 5 539.936279296875 3 539.935607 1616.78499 NaN NaN NaN NaN NaN NaN NaN 69.526 1 72.981 72.481 73.481 3.4548 0 0 0 0.38417 1 16136 16136 0.094841 0 1 + 15492 28014 9926 9932 19017 19017 0.00127109719096552 IYYFKANVF 9 Unmodified _IYYFKANVF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN48_class_I_Rep_1 5 582.80810546875 2 582.808042 1163.60153 0.51098 0.00029781 -0.18867 -0.00010996 0.32232 0.00018785 582.8078046809061 65.052 0.53732 68.506 68.296 68.833 3.4541 61 41 2 0 0 0 0.12799 4 14828 14741;14782;14824;14828 28.487 23.148 1 155560 15493 1963 9927 9933 19018;19019;19020;19021 19021 0.02627503999747205 IYYFKANVF 9 Unmodified _IYYFKANVF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN48_class_I_Rep_2 6 582.807861328125 2 582.808042 1163.60153 0.51216 0.00029849 -0.14455 -8.4242E-05 0.36762 0.00021425 582.8076457302915 64.906 0.71176 68.385 68.054 68.766 3.4792 69 50 2 0 0 0 0.17468 4 14710 14672;14710;14751;14772 23.148 12.532 1 155730 15494 1963 9927 9933 19022;19023;19024;19025 19023 0.02627503999747205 IYYFKANVF 9 Unmodified _IYYFKANVF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN48_class_I_Rep_3 7 582.8082885742188 2 582.808042 1163.60153 0.5244 0.00030563 -0.21702 -0.00012648 0.30739 0.00017915 582.8077160756787 64.85 0.5874 68.358 68.09 68.677 3.5083 81 44 2 0 0 0 0.17468 3 14579 14545;14579;14633 23.148 7.3012 1 164990 15495 1963 9927 9933 19026;19027;19028 19027 0.02627503999747205 IYYFKANVF 9 Unmodified _IYYFKANVF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 582.808042 1163.60153 0.5244 0.00030563 -0.21702 -0.00012648 0.30739 0.00017915 582.8077160756787 64.85 0.5874 68.358 68.09 68.677 3.5083 -0.058399 -3.5237E-05 NaN 28.487 81 44 2 NaN NaN NaN NaN 0 NaN NaN 0 164990 15496 1963 9927 9933 0.02627503999747205 IYYKAVLVQV 10 Unmodified _IYYKAVLVQV_ 0 0 0 REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|49|3|anti-sense REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|49|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 598.357666015625 2 598.357899 1194.70125 0.51612 0.00030882 -0.52673 -0.00031517 -0.010605 -6.3457E-06 598.3574845554384 52.707 0.33289 56.04 55.902 56.235 3.3332 36 25 2 0 0 0 0.54078 1 11795 11795 6.7232 0.99131 1 175910 + 15497 30763 9928 9934 19029 19029 0.11168321613695298 IYYKAVLVQV 10 Unmodified _IYYKAVLVQV_ 0 0 0 REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|49|3|anti-sense REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|49|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 598.357899 1194.70125 0.31413 0.00018796 -0.6798 -0.00040677 -0.36567 -0.0002188 598.3572846415906 52.439 0.18935 55.998 55.947 56.136 3.5585 -0.028906 -0.00023604 NaN 6.7232 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 137680 + 15498 30763 9928 9934 0.11168321613695298 IYYKCVKN 8 Unmodified _IYYKCVKN_ 0 0 0 REV__L1MC5_dup4709|chr5:132957762-132958150:+|1.2133865828732575|0.0073550757237742|7.37|150.0|26|2|anti-sense REV__L1MC5_dup4709|chr5:132957762-132958150:+|1.2133865828732575|0.0073550757237742|7.37|150.0|26|2|anti-sense MSMS UPN48_class_I_Rep_3 7 515.7754516601562 2 515.773145 1029.53174 NaN NaN NaN NaN NaN NaN NaN 72.046 1 75.572 75.072 76.072 3.5266 0 0 0 0.38547 1 16769 16769 13.508 1.8676 1 + 15499 27081 9929 9935 19030 19030 0.018153020594809277 IYYTLILKLE 10 Unmodified _IYYTLILKLE_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 634.8787841796875 2 634.878665 1267.74278 NaN NaN NaN NaN NaN NaN NaN 106.73 1 110.27 109.77 110.77 3.5345 0 0 0 0.53105 1 25840 25840 3.2813 0 1 15500 33268 9930 9936 19031 19031 0.11961457582378898 IYYTLILKLE 10 Unmodified _IYYTLILKLE_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3778076171875 2 634.878665 1267.74278 0.51358 0.00032606 -0.46372 -0.0002944 0.049859 3.1655E-05 634.8785948611012 104.95 0.26304 108.48 108.39 108.65 3.5308 82 41 3 0 0 0 0.84575 1 25739 25739 3.5965 0.31518 1 48464000 15501 33268 9930 9936 19032 19032 0.11961457582378898 IYYTLILKLE 10 Unmodified _IYYTLILKLE_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 634.8782958984375 2 634.878665 1267.74278 NaN NaN NaN NaN NaN NaN NaN 106.17 1 109.79 109.29 110.29 3.6277 0 0 0 0.53105 1 25584 25584 1.4819 0 1 15502 33268 9930 9936 19033 19033 0.11961457582378898 IYYTLILKLE 10 Unmodified _IYYTLILKLE_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 634.87890625 2 634.878665 1267.74278 NaN NaN NaN NaN NaN NaN NaN 106.12 1 109.8 109.3 110.3 3.6834 0 0 0 0.53105 1 25096 25096 1.4819 0 1 15503 33268 9930 9936 19034 19034 0.11961457582378898 IYYTLILKLE 10 Unmodified _IYYTLILKLE_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 634.3778076171875 2 634.878665 1267.74278 0.4974 0.00031579 0.24501 0.00015555 0.74241 0.00047134 634.878896751584 103.31 0.36524 107.02 106.69 107.06 3.7108 117 52 3 0 0 0 0.84575 1 24418 24418 3.5965 0 1 75700000 15504 33268 9930 9936 19035 19035 0.11961457582378898 IYYTLILKLE 10 Unmodified _IYYTLILKLE_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|18|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 634.878665 1267.74278 0.43218 0.00027438 -0.17414 -0.00011056 0.25804 0.00016382 634.8786355188622 104.8 0.50381 108.43 108.35 108.86 3.6247 -0.024316 0.00012968 NaN 3.5965 120 72 2 NaN NaN NaN NaN 0 NaN NaN 0 13081000 15505 33268 9930 9936 0.11961457582378898 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS UPN48_class_I_Rep_1 5 587.8110961914062 2 587.810782 1173.60701 0.54241 0.00031883 -0.2222 -0.00013061 0.3202 0.00018822 587.8104860183247 58.845 0.79 62.332 62.004 62.794 3.487 120 49 3 0 0 0 0.016816 5 12854 12809;12854;12892;12934;12976 65.474 23.634 1 417600 15506 3873 9931 9937 19036;19037;19038;19039;19040 19037 0.027151827915531612 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS UPN48_class_I_Rep_2 6 587.8115234375 2 587.810782 1173.60701 0.56917 0.00033456 -0.13859 -8.1465E-05 0.43058 0.0002531 587.8104931521912 58.814 0.70863 62.312 62.057 62.766 3.4987 108 43 3 0 0 0 0.038999 7 12793 12793;12805;12853;12894;12929;12939;12948 53.404 22.767 1 509990 15507 3873 9931 9937 19041;19042;19043;19044;19045;19046;19047 19041 0.027151827915531612 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS UPN48_class_I_Rep_3 7 587.811279296875 2 587.810782 1173.60701 0.45905 0.00026984 0.061809 3.6332E-05 0.52086 0.00030617 587.8106704962253 58.698 0.72117 62.221 61.889 62.61 3.5231 118 48 3 0 0 0 0.029742 5 12712 12668;12712;12753;12794;12841 57.249 21.122 1 520590 15508 3873 9931 9937 19048;19049;19050;19051;19052 19049 0.027151827915531612 IYYVIMVFK 9 Unmodified _IYYVIMVFK_ 0 0 0 REV__MLT1D_dup3651|chr3:100361944-100362376:-|1.0884462167608937|0.323094167349797|1.75|151.0|16|3|sense REV__MLT1D_dup3651|chr3:100361944-100362376:-|1.0884462167608937|0.323094167349797|1.75|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 588.3120727539062 2 588.330296 1174.64604 NaN NaN NaN NaN NaN NaN NaN 58.632 1 62.131 61.631 62.631 3.4987 0 0 0 0.24828 1 12788 12788 13.508 4.1604 1 + 15509 31682 9932 9938 19053 19053 0.06570191821560911 IYYVNGTY 8 Unmodified _IYYVNGTY_ 0 0 0 ENST00000518062.1_1_5:158588183-158590023:-|nuORF;ENSG00000145860.12,RNF145,chr5,-,I11.1,159169820,159173982|28|6.72|4|intron;ENSG00000145860.12,RNF145,chr5,-,I11.1,159169820,159173982|28|6.72|1|intron;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 ENST00000518062.1_1_5:158588183-158590023:-|nuORF ENST00000518062.1_1_5:158588183-158590023:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 497.2840270996094 2 496.739825 991.465098 -0.28844 -0.00014328 -3.5357 -0.0017563 -3.8242 -0.0018996 496.73794984238816 28.949 0.067818 32.706 32.658 32.726 3.7578 6 4 2 0 0 0 0.72333 1 4530 4530 10.183 3.8293 1 20122 15510 3415 9933 9939 19054 19054 -0.030976102307704423 IYYWYQSPL 9 Unmodified _IYYWYQSPL_ 0 0 0 REV__ENSG00000154227|ENST00000679737|CERS3 REV__ENSG00000154227|ENST00000679737|CERS3 MSMS UPN48_class_I_Rep_1 5 616.7991943359375 2 616.802957 1231.59136 NaN NaN NaN NaN NaN NaN NaN 58.221 1 61.708 61.208 62.208 3.487 0 0 0 0.29868 1 12684 12684 10.824 2.9138 1 + 15511 19731 9934 9940 19055 19055 -0.015171037254731345 KAAEYLLGQ 9 Unmodified _KAAEYLLGQ_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS UPN47_class_I_Rep_1 2 496.774169921875 2 496.7742 991.533846 0.14412 7.1593E-05 0.013082 6.4987E-06 0.1572 7.8091E-05 496.7741852700216 71.15 0.73013 74.525 74.288 75.018 3.3751 126 61 3 0 0 0 0.22932 2 17273 17273;17445 18.373 0 1 444150 + 15512 21026 9935 9941 19056;19057 19056 0.03774054068958321 KAAIQALRKM 10 Unmodified _KAAIQALRKM_ 0 0 0 CON__ENSEMBL:ENSBTAP00000032840;ENSG00000084674|ENST00000233242|APOB CON__ENSEMBL:ENSBTAP00000032840;ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MSMS UPN47_class_I_Rep_3 4 565.34521484375 2 565.347343 1128.68013 NaN NaN NaN NaN NaN NaN NaN 108.7 1 112.23 111.73 112.73 3.5382 0 0 0 0.53105 1 26629 26629 10.074 3.3508 1 + 15513 629;1255 9936 9942 19058 19058 0.12094033033167761 KAARLDRL 8 Unmodified _KAARLDRL_ 0 0 0 REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 62.759 1 66.015 65.515 66.515 3.2558 0 0 0 0.40746 1 14843 14843 0.69038 0 1 + 15514 22868 9937 9943 19059 19059 0.10392288636876401 KAARLDRL 8 Unmodified _KAARLDRL_ 0 0 0 REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.795166015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 111.37 1 114.89 114.39 115.39 3.5226 0 0 0 0.40738 1 27103 27103 0.79363 0 1 + 15515 22868 9937 9943 19060 19060 0.10392288636876401 KAARLDRL 8 Unmodified _KAARLDRL_ 0 0 0 REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 115.83 1 119.29 118.79 119.79 3.462 0 0 0 0.40738 1 28493 28493 0.79363 0 1 + 15516 22868 9937 9943 19061 19061 0.10392288636876401 KAARLLLW 8 Unmodified _KAARLLLW_ 0 0 0 L1PA10_dup276|chr1:174901607-174902942:-|2.2320383280369835|0.0388607516305891|5.84|151.0|32|3|sense L1PA10_dup276|chr1:174901607-174902942:-|2.2320383280369835|0.0388607516305891|5.84|151.0|32|3|sense L1PA10_dup276|chr1:174901607-174902942:-|2.2320383280369835|0.0388607516305891|5.84|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 485.81219482421875 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 65.096 1 68.575 68.075 69.075 3.4792 0 0 0 0.40625 1 14771 14771 2.3027 0 1 15517 13600 9938 9944 19062 19062 0.12634951164693575 KADRDLIIY 9 Unmodified _KADRDLIIY_ 0 0 0 REV__L1ME1_dup8013|chr4:73193951-73194650:-|1.6590739407000832|0.0156369319993845|6.73|151.0|5|1|sense REV__L1ME1_dup8013|chr4:73193951-73194650:-|1.6590739407000832|0.0156369319993845|6.73|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 553.7955932617188 2 553.813856 1105.61316 0.51585 0.00028568 -0.46567 -0.0002579 0.050174 2.7787E-05 553.813530861384 57.529 0.93649 60.821 60.499 61.436 3.2912 169 77 3 0 0 0 0.091581 1 13200 13200 22.736 2.3217 1 514060 + 15518 27797 9939 9945 19063 19063 0.06457701023100526 KAEEYHDC 8 Unmodified _KAEEYHDC_ 0 0 0 REV__ENSG00000177575|ENST00000432237|CD163 REV__ENSG00000177575|ENST00000432237|CD163 MSMS UPN46_class_I_Rep_3 1 497.7553405761719 2 497.700374 993.386196 NaN NaN NaN NaN NaN NaN NaN 28.27 1 28.27 27.77 28.77 0 0 0 0 0.40738 1 4316 4316 0.79363 0 1 + 15519 20623 9940 9946 19064 19064 -0.11076205527365346 KAFFHVGEGGL 11 Unmodified _KAFFHVGEGGL_ 0 0 0 L1MD_dup6180|chr11:68768877-68769098:-|1.2767636344228035|0.094760779351033|3.75|151.0|10|3|sense L1MD_dup6180|chr11:68768877-68769098:-|1.2767636344228035|0.094760779351033|3.75|151.0|10|3|sense L1MD_dup6180|chr11:68768877-68769098:-|1.2767636344228035|0.094760779351033|3.75|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.3072509765625 2 581.306198 1160.59784 0.36225 0.00021058 0.46869 0.00027245 0.83094 0.00048303 581.3067391906808 59.83 0.60561 62.995 62.775 63.38 3.1651 60 39 2 0 0 0 0.65559 1 14065 14065 2.7352 0 1 90104 15520 11885 9941 9947 19065 19065 0.023968342259195197 KAFKKIYMH 9 Unmodified _KAFKKIYMH_ 0 0 0 L1MD_dup2582|chr5:43034954-43035725:-|1.1125469404993902|0.0848795922438914|3.71|151.0|15|2|sense L1MD_dup2582|chr5:43034954-43035725:-|1.1125469404993902|0.0848795922438914|3.71|151.0|15|2|sense L1MD_dup2582|chr5:43034954-43035725:-|1.1125469404993902|0.0848795922438914|3.71|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 583.3333129882812 2 583.331162 1164.64777 NaN NaN NaN NaN NaN NaN NaN 88.872 1 92.265 91.765 92.765 3.3931 0 0 0 0.39326 1 22289 22289 2.3027 0.24298 1 15521 11872 9942 9948 19066 19066 0.07203245630194033 KAFKWSSN 8 Unmodified _KAFKWSSN_ 0 0 0 ENSG00000269067|ENST00000594710|ZNF728;nc|ENSG00000168122|Q9NSJ1|ZNF355P ENSG00000269067|ENST00000594710|ZNF728 ENSG00000269067|ENST00000594710|ZNF728 MSMS UPN48_class_I_Rep_2 6 484.2532043457031 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 24.142 1 27.782 27.282 28.282 3.6397 0 0 0 0.40746 1 2756 2756 0.69038 0 1 15522 5808 9943 9949 19067 19067 0.0077291810027873 KAFPLKIVT 9 Unmodified _KAFPLKIVT_ 0 0 0 L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|160|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|160|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|160|3|sense MSMS UPN47_class_I_Rep_2 3 508.8277282714844 2 508.828778 1015.643 NaN NaN NaN NaN NaN NaN NaN 103.34 1 106.87 106.37 107.37 3.5231 0 0 0 0.38478 1 25124 25124 4.3292 1.7518 1 15523 13673 9944 9950 19068 19068 0.1358068475908567 KAFQRRRRR 9 Unmodified _KAFQRRRRR_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MSMS UPN48_class_I_Rep_1 5 425.25616455078125 3 425.265672 1272.77519 NaN NaN NaN NaN NaN NaN NaN 107.47 1 111.1 110.6 111.6 3.6299 0 0 0 0.39887 1 25906 25906 0.96228 0.18574 1 15524 5480 9945 9951 19069 19069 0.14971147339247182 KAFRALLL 8 Unmodified _KAFRALLL_ 0 0 0 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 MULTI-MSMS UPN48_class_I_Rep_1 5 466.3080139160156 2 466.308013 930.601472 0.065669 3.0622E-05 -0.13119 -6.1174E-05 -0.065519 -3.0552E-05 466.3078216959807 49.858 1.1137 53.382 52.828 53.941 3.5246 142 68 3 0 0 0 0.82752 1 10156 10156 36.044 5.8194 1 298410 15525 5414 9946 9952 19070 19070 0.1333954879042949 KAFRLHMHLI 10 Unmodified _KAFRLHMHLI_ 0 0 0 ENSG00000128000|ENST00000434248|ZNF780B;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A ENSG00000128000|ENST00000434248|ZNF780B ENSG00000128000|ENST00000434248|ZNF780B MULTI-MSMS UPN46_class_I_Rep_3 1 633.369384765625 2 633.36861 1264.72267 0.72137 0.0004569 0.53798 0.00034074 1.2594 0.00079763 633.368783275816 92.599 0.083847 92.599 92.548 92.631 0 28 9 4 0 0 0 0.56273 1 22403 22403 1.6526 1.6526 1 1008100 15526 2581 9947 9953 19071 19071 0.1008942816142735 KAFSLKML 8 Unmodified _KAFSLKML_ 0 0 0 REV__L1PA14_dup510|chr3:23362884-23366081:+|3.6228772180928535|0.0405941661816546|6.48|151.0|176|2|anti-sense REV__L1PA14_dup510|chr3:23362884-23366081:+|3.6228772180928535|0.0405941661816546|6.48|151.0|176|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 469.2820739746094 2 469.280606 936.546659 0.20118 9.4408E-05 3.7475 0.0017586 3.9487 0.001853 469.2822531005154 107.58 0.08606 111.27 111.22 111.3 3.6813 19 12 2 0 0 0 0.82752 1 25372 25372 10.824 0 1 2532100 + 15527 29173 9948 9954 19072 19072 0.07584793927503597 KAGCQYYA 8 Unmodified _KAGCQYYA_ 0 0 0 nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32575832-32580264:-|nuORF nc|ENSG00000120616|Q9H2F5-3|EPC1;ENST00000495790.1_1_10:32575832-32580264:-|nuORF nc|ENSG00000120616|Q9H2F5-3|EPC1 MSMS UPN46_class_I_Rep_3 1 452.2041320800781 2 452.205096 902.395638 NaN NaN NaN NaN NaN NaN NaN 65.437 1 65.437 64.937 65.937 0 0 0 0 0.40738 1 14789 14789 0.79363 0 1 15528 2329;7095 9949 9955 19073 19073 -0.059463924511760524 KAGIPAEIRRQ 11 Unmodified _KAGIPAEIRRQ_ 0 0 0 HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.8696899414062 2 619.870028 1237.7255 0.65659 0.000407 -1.1498 -0.00071275 -0.49325 -0.00030575 619.869085778999 90.502 0.18581 90.502 90.425 90.611 0 44 22 3 0 0 0 0.65559 1 21817 21817 2.7352 1.0826 1 525340 15529 8167 9950 9956 19074 19074 0.11614974819940471 KAGIPAEIRRQ 11 Unmodified _KAGIPAEIRRQ_ 0 0 0 HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 619.870028 1237.7255 0.56647 0.00035114 -1.1714 -0.00072609 -0.60489 -0.00037495 619.8692921312888 87.099 0.85703 90.54 89.883 90.74 3.4407 0.031503 -5.4133E-05 NaN 2.7352 167 116 2 NaN NaN NaN NaN 0 NaN NaN 0 207700 15530 8167 9950 9956 0.11614974819940471 KAGIPAEIRRQ 11 Unmodified _KAGIPAEIRRQ_ 0 0 0 HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense HERVH-int_dup5656|chr20:18519923-18522644:-|1.062902531717513|0.0650376648601597|4.03|151.0|97|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 619.870028 1237.7255 0.49146 0.00030464 -1.064 -0.00065952 -0.57251 -0.00035488 619.8693712201117 86.767 0.29752 90.484 90.333 90.631 3.7171 -0.024742 7.9006E-05 NaN 2.7352 102 43 3 NaN NaN NaN NaN 0 NaN NaN 0 329370 15531 8167 9950 9956 0.11614974819940471 KAGIPDRR 8 Unmodified _KAGIPDRR_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7722473144531 2 456.772326 911.530098 -0.13916 -6.3565E-05 0.23051 0.00010529 0.091349 4.1726E-05 456.77232281723144 81.037 0.66075 84.36 84.077 84.738 3.3231 152 78 3 0 0 0 0.82752 1 20247 20247 2.3027 0 1 367650 15532 1681 9951 9957 19075 19075 0.07079429085752054 KAGKRIPRRGE 11 Unmodified _KAGKRIPRRGE_ 0 0 0 ENSG00000189134|ENST00000343684|NKAPL;ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP ENSG00000189134|ENST00000343684|NKAPL;ENST00000477789.5_1_X:119059185-119070773:-|nuORF ENSG00000189134|ENST00000343684|NKAPL MULTI-SECPEP UPN47_class_I_Rep_3 4 422.59246826171875 3 423.261705 1266.76329 -0.67724 -0.00028665 -0.37641 -0.00015932 -1.0536 -0.00044597 423.2615921682263 47.499 1.0665 50.739 49.848 50.914 3.2405 155 74 3 0 0 0 22.551 1 10150 10150 2.2527 0.32522 1 935340 15533 5272;1591 9952 9958 19076 19076 0.1405748580539239 KAGLQAFF 8 Unmodified _KAGLQAFF_ 0 0 0 ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP ENST00000489736.5_1_3:148904295-148925363:-|nuORF ENST00000489736.5_1_3:148904295-148925363:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 441.24755859375 2 441.247621 880.480688 0.16172 7.1359E-05 -0.53702 -0.00023696 -0.3753 -0.0001656 441.2473388796164 108.77 0.34891 112.4 112.27 112.62 3.6355 54 31 2 0 0 0 0.82752 1 26831 26831 2.8892 0 1 6156700 + 15534 628 9953 9959 19077 19077 0.03566721076947488 KAGLQAFF 8 Unmodified _KAGLQAFF_ 0 0 0 ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP ENST00000489736.5_1_3:148904295-148925363:-|nuORF ENST00000489736.5_1_3:148904295-148925363:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 441.247621 880.480688 -0.08615 -3.8014E-05 -0.33984 -0.00014995 -0.42599 -0.00018797 441.2474792426319 108.85 0.33334 112.38 112.21 112.54 3.5333 -0.028502 3.3685E-05 NaN 2.8892 52 35 2 NaN NaN NaN NaN 0 NaN NaN 0 6811400 + 15535 628 9953 9959 0.03566721076947488 KAGLQAFF 8 Unmodified _KAGLQAFF_ 0 0 0 ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP ENST00000489736.5_1_3:148904295-148925363:-|nuORF ENST00000489736.5_1_3:148904295-148925363:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 441.247621 880.480688 -0.27648 -0.000122 -0.10939 -4.8268E-05 -0.38588 -0.00017027 441.2475816072879 108.78 0.48675 112.31 112.19 112.68 3.5382 -0.094539 0.00023705 NaN 2.8892 77 52 2 NaN NaN NaN NaN 0 NaN NaN 0 7038600 + 15536 628 9953 9959 0.03566721076947488 KAGLQAFF 8 Unmodified _KAGLQAFF_ 0 0 0 ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP ENST00000489736.5_1_3:148904295-148925363:-|nuORF ENST00000489736.5_1_3:148904295-148925363:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 441.247621 880.480688 -0.028678 -1.2654E-05 -0.33818 -0.00014922 -0.36686 -0.00016188 441.24748751730027 108.79 0.44218 112.42 112.26 112.7 3.6321 0.016445 3.5146E-05 NaN 2.8892 77 50 2 NaN NaN NaN NaN 0 NaN NaN 0 4453800 + 15537 628 9953 9959 0.03566721076947488 KAGLQAFF 8 Unmodified _KAGLQAFF_ 0 0 0 ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP ENST00000489736.5_1_3:148904295-148925363:-|nuORF ENST00000489736.5_1_3:148904295-148925363:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 441.247621 880.480688 0.1248 5.5066E-05 -0.42052 -0.00018555 -0.29572 -0.00013049 441.24742048651177 108.84 0.32596 112.52 112.29 112.62 3.6746 0.11083 -3.7515E-05 NaN 2.8892 44 30 2 NaN NaN NaN NaN 0 NaN NaN 0 5224700 + 15538 628 9953 9959 0.03566721076947488 KAGMFWRRL 9 Unmodified _KAGMFWRRL_ 0 0 0 REV__Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|53|3|sense REV__Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|53|3|sense MSMS UPN47_class_I_Rep_1 2 582.8279418945312 2 582.826578 1163.6386 NaN NaN NaN NaN NaN NaN NaN 31.042 1 34.771 34.271 35.271 3.7293 0 0 0 0.39518 1 5154 5154 1.8442 0 1 + 15539 32177 9954 9960 19078 19078 0.0633289706454434 KAGTQQVL 8 Unmodified _KAGTQQVL_ 0 0 0 L1MB3_dup7205|chr8:652737-653238:+|2.341023957190236|0.2817828115683954|3.05|151.0|18|3|sense L1MB3_dup7205|chr8:652737-653238:+|2.341023957190236|0.2817828115683954|3.05|151.0|18|3|sense L1MB3_dup7205|chr8:652737-653238:+|2.341023957190236|0.2817828115683954|3.05|151.0|18|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.7479553222656 2 422.747985 843.481417 -0.49971 -0.00021125 0.22688 9.5914E-05 -0.27283 -0.00011534 422.7480679664919 12.425 0.45348 12.425 12.323 12.777 0 68 46 3 0 0 0 0.82752 1 98 98 11.64 0 1 84444 15540 10452 9955 9961 19079 19079 0.053415157259905754 KAGVETTKPSK 11 Unmodified _KAGVETTKPSK_ 0 0 0 nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5 nc|ENSG00000211675|P0CG04|IGLC1 nc|ENSG00000211675|P0CG04|IGLC1 MULTI-MSMS UPN48_class_I_Rep_3 7 573.3299560546875 2 573.32987 1144.64519 0.48695 0.00027918 -0.37356 -0.00021417 0.11339 6.5008E-05 573.3295624689337 88.594 0.40332 92.404 92.099 92.502 3.8104 73 50 2 0 0 0 0.66277 1 20990 20990 2.086 2.086 1 170810 15541 16812 9956 9962 19080 19080 0.0786506870622361 KAHAAPVHQ 9 Unmodified _KAHAAPVHQ_ 0 0 0 nc|ENSG00000158286|Q6ZRF8-3|RNF207;ENST00000496676.5_1_1:6269476-6272097:+|nuORF nc|ENSG00000158286|Q6ZRF8-3|RNF207 nc|ENSG00000158286|Q6ZRF8-3|RNF207 MSMS UPN48_class_I_Rep_2 6 479.8212890625 2 479.764501 957.514448 NaN NaN NaN NaN NaN NaN NaN 115.24 1 118.9 118.4 119.4 3.6616 0 0 0 0.39518 1 27576 27576 1.8442 1.0506 1 15542 7104 9957 9963 19081 19081 0.03399142568696334 KAHHKAKQ 8 Unmodified _KAHHKAKQ_ 0 0 0 L1MB4_dup3488|chr7:92219302-92220323:-|1.3493919205456082|0.0743542772868301|4.18|151.0|25|2|sense L1MB4_dup3488|chr7:92219302-92220323:-|1.3493919205456082|0.0743542772868301|4.18|151.0|25|2|sense L1MB4_dup3488|chr7:92219302-92220323:-|1.3493919205456082|0.0743542772868301|4.18|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 474.2821350097656 2 474.280318 946.546083 NaN NaN NaN NaN NaN NaN NaN 37.4 1 37.4 36.9 37.9 0 0 0 0 0.40604 1 7029 7029 2.5775 0.27475 1 15543 10507 9958 9964 19082 19082 0.07067135322643026 KAHLGTAL 8 Unmodified _KAHLGTAL_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS UPN46_class_I_Rep_3 1 405.7452087402344 2 405.745245 809.475937 -0.24107 -9.7814E-05 0.46453 0.00018848 0.22345 9.0665E-05 405.7452799289077 27.955 1.1374 27.955 27.483 28.62 0 157 87 3 0 0 0 0.82752 7 4137 4137;4174;4221;4259;4300;4345;4385 120.45 56.214 1 233000 15544 5156 9959 9965 19083;19084;19085;19086;19087;19088;19089 19083 0.06357836934171246 KAHQEYPQG 9 Unmodified _KAHQEYPQG_ 0 0 0 REV__ENST00000502799.1_1_4:843463-843892:-|nuORF REV__ENST00000502799.1_1_4:843463-843892:-|nuORF MSMS UPN46_class_I_Rep_3 1 529.2540283203125 2 529.256705 1056.49886 NaN NaN NaN NaN NaN NaN NaN 15.695 1 15.695 15.195 16.195 0 0 0 0 0.3967 1 946 946 1.4819 0.68827 1 + 15545 20663 9960 9966 19090 19090 -0.027131887389941767 KAIKKRRRRRK 11 Unmodified _KAIKKRRRRRK_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MSMS UPN48_class_I_Rep_1 5 499.34527587890625 3 499.346326 1495.01715 NaN NaN NaN NaN NaN NaN NaN 111.96 1 115.59 115.09 116.09 3.6321 0 0 0 0.38417 1 27163 27163 0 0 1 15546 4121 9961 9967 19091 19091 0.28944177695370854 KAIPRPRLP 9 Unmodified _KAIPRPRLP_ 0 0 0 ENST00000370200.5_1_10:102822312-102822666:+|nuORF ENST00000370200.5_1_10:102822312-102822666:+|nuORF ENST00000370200.5_1_10:102822312-102822666:+|nuORF MSMS UPN46_class_I_Rep_3 1 524.34130859375 2 524.342918 1046.67128 NaN NaN NaN NaN NaN NaN NaN 65.506 1 65.506 65.006 66.006 0 0 0 0 0.38639 1 14809 14809 3.9444 1.6417 1 15547 6380 9962 9968 19092 19092 0.1498142745901987 KAIPVRRV 8 Unmodified _KAIPVRRV_ 0 0 0 ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1 ENSG00000112139|ENST00000434837|MDGA1 ENSG00000112139|ENST00000434837|MDGA1 MSMS UPN46_class_I_Rep_3 1 469.8328552246094 2 469.816536 937.618519 NaN NaN NaN NaN NaN NaN NaN 17.766 1 17.766 17.266 18.266 0 0 0 0 0.40746 1 1449 1449 0.69038 0 1 15548 1998 9963 9969 19093 19093 0.14721469396226894 KAISFSKVTI 10 Unmodified _KAISFSKVTI_ 0 0 0 REV__L1PA16_dup10831|chr12:82958385-82960802:+|1.2695031803681227|0.0573318096731691|4.47|147.0|70|3|sense REV__L1PA16_dup10831|chr12:82958385-82960802:+|1.2695031803681227|0.0573318096731691|4.47|147.0|70|3|sense MSMS UPN47_class_I_Rep_3 4 547.8027954101562 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 82.767 1 86.104 85.604 86.604 3.337 0 0 0 0.53105 1 20746 20746 2.9952 1.151 1 + 15549 29318 9964 9970 19094 19094 0.11167462062576305 KAITIISHV 9 Unmodified _KAITIISHV_ 0 0 0 REV__L1MB5_dup3116|chr7:92574066-92574538:+|1.597041975663644|0.1211556813567593|3.72|151.0|5|2|sense REV__L1MB5_dup3116|chr7:92574066-92574538:+|1.597041975663644|0.1211556813567593|3.72|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 491.79608154296875 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 53.085 1 56.28 55.78 56.78 3.1948 0 0 0 0.39598 1 11946 11946 1.6526 0 1 + 15550 26053 9965 9971 19095 19095 0.11078923719605882 KAIWVTSKFGE 11 Unmodified _KAIWVTSKFGE_ 0 0 0 L1MC1_dup1071|chr1:246057472-246058426:+|1.1287919208826762|0.0148301890908241|6.25|151.0|45|1|anti-sense L1MC1_dup1071|chr1:246057472-246058426:+|1.1287919208826762|0.0148301890908241|6.25|151.0|45|1|anti-sense L1MC1_dup1071|chr1:246057472-246058426:+|1.1287919208826762|0.0148301890908241|6.25|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_2 6 633.3483276367188 2 633.348063 1264.68157 NaN NaN NaN NaN NaN NaN NaN 107.16 1 110.83 110.33 111.33 3.6783 0 0 0 0.38417 1 25312 25312 2.9952 0 1 15551 11080 9966 9972 19096 19096 0.05981945602934502 KAKAAAKL 8 Unmodified _KAKAAAKL_ 0 0 0 REV__ENSG00000177084|ENST00000320574|POLE REV__ENSG00000177084|ENST00000320574|POLE MSMS UPN48_class_I_Rep_3 7 400.7712707519531 2 400.771263 799.527973 NaN NaN NaN NaN NaN NaN NaN 50.268 1 53.889 53.389 54.389 3.621 0 0 0 0.40625 1 10180 10180 2.3027 0 1 + 15552 20610 9967 9973 19097 19097 0.12019000347936526 KAKHNVHL 8 Unmodified _KAKHNVHL_ 0 0 0 REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|29|1|sense REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|29|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 473.78228759765625 2 473.782693 945.550834 -0.37033 -0.00017545 0.048525 2.299E-05 -0.3218 -0.00015246 473.7827457396365 20.244 0.51216 23.855 23.77 24.282 3.6118 66 51 2 0 0 0 0.82752 1 2015 2015 4.756 1.1595 1 49579 + 15553 25535 9968 9974 19098 19098 0.07588019465413254 KAKHNVHL 8 Unmodified _KAKHNVHL_ 0 0 0 REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|29|1|sense REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|29|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 473.782693 945.550834 -0.37033 -0.00017545 0.048525 2.299E-05 -0.3218 -0.00015246 473.7827457396365 20.244 0.51216 23.855 23.77 24.282 3.6118 -0.087278 9.3885E-05 NaN 4.756 66 51 2 NaN NaN NaN NaN 0 NaN NaN 0 49579 + 15554 25535 9968 9974 0.07588019465413254 KAKHNVHL 8 Unmodified _KAKHNVHL_ 0 0 0 REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|29|1|sense REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|29|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 473.782693 945.550834 -0.29285 -0.00013875 -0.1492 -7.0689E-05 -0.44205 -0.00020943 473.7826358837183 20.623 0.81177 24.03 23.61 24.422 3.4074 0.087278 -9.3473E-05 NaN 4.756 118 83 2 NaN NaN NaN NaN 0 NaN NaN 0 48557 + 15555 25535 9968 9974 0.07588019465413254 KAKLKCRVF 9 Unmodified _KAKLKCRVF_ 0 0 0 L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|50|2|sense L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|50|2|sense L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|50|2|sense MSMS UPN47_class_I_Rep_1 2 546.8406982421875 2 546.839154 1091.66375 NaN NaN NaN NaN NaN NaN NaN 92.906 1 96.627 96.127 97.127 3.7209 0 0 0 0.39428 1 23132 23132 2.0598 0 1 15556 8611 9969 9975 19099 19099 0.12158951867104406 KAKLQSYL 8 Unmodified _KAKLQSYL_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS UPN48_class_I_Rep_3 7 475.78656005859375 2 475.78711 949.559667 0.088401 4.206E-05 0.047355 2.2531E-05 0.13576 6.4591E-05 475.7870465516694 55.059 1.1188 58.628 58.277 59.396 3.5694 145 66 3 0 0 0 0.82752 1 11851 11851 10.824 0 1 1422400 + 15557 18881 9970 9976 19100 19100 0.08286948311229025 KAKMQWKC 8 Unmodified _KAKMQWKC_ 0 0 0 REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|52|3|sense REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|52|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.7664489746094 2 511.76734 1021.52013 -0.25369 -0.00012983 -0.83374 -0.00042668 -1.0874 -0.00055651 511.76694705662595 16.282 0.39453 19.804 19.629 20.023 3.5224 71 47 2 0 0 0 0.82752 2 999 999;1030 2.3027 0 1 34625 + 15558 26239 9971 9977 19101;19102 19101 0.010227817645045434 KAKMQWKC 8 Unmodified _KAKMQWKC_ 0 0 0 REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|52|3|sense REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|52|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 511.76734 1021.52013 -0.27324 -0.00013983 -1.0096 -0.00051668 -1.2828 -0.00065651 511.76682332399105 16.487 0.27854 19.873 19.746 20.024 3.3864 -0.095203 -0.00012137 NaN 2.3027 51 34 2 NaN NaN NaN NaN 0 NaN NaN 0 18589 + 15559 26239 9971 9977 0.010227817645045434 KAKMQWKC 8 Unmodified _KAKMQWKC_ 0 0 0 REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|52|3|sense REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|52|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 511.76734 1021.52013 -0.55892 -0.00028604 -0.77465 -0.00039644 -1.3336 -0.00068248 511.7669108531245 16.866 0.058098 20.228 20.193 20.251 3.3619 0.25931 0.0001191 NaN 2.3027 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 11221 + 15560 26239 9971 9977 0.010227817645045434 KAKMVKYLL 9 Unmodified _KAKMVKYLL_ 0 0 0 ENSG00000189127|ENST00000338682|ANKRD34B ENSG00000189127|ENST00000338682|ANKRD34B ENSG00000189127|ENST00000338682|ANKRD34B MSMS UPN48_class_I_Rep_3 7 547.3325805664062 2 547.343738 1092.67292 NaN NaN NaN NaN NaN NaN NaN 96.246 1 100.15 99.654 100.65 3.9084 0 0 0 0.39428 1 22808 22808 2.0598 0 1 15561 5271 9972 9978 19103 19103 0.13029300432776836 KAKNKLMDLR 10 Unmodified _KAKNKLMDLR_ 0 0 0 REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1 REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1 MSMS UPN47_class_I_Rep_3 4 406.24896240234375 3 406.244664 1215.71216 NaN NaN NaN NaN NaN NaN NaN 84.448 1 87.809 87.309 88.309 3.3615 0 0 0 0.53105 1 21196 21196 0.69767 0.07084 1 + 15562 17759 9973 9979 19104 19104 0.11293400716317592 KAKPHRSLE 9 Unmodified _KAKPHRSLE_ 0 0 0 AluJb_dup111441|chr18:9110521-9110807:-|1.3770082651232698|0.2524557989168458|2.45|151.0|1|1|sense AluJb_dup111441|chr18:9110521-9110807:-|1.3770082651232698|0.2524557989168458|2.45|151.0|1|1|sense AluJb_dup111441|chr18:9110521-9110807:-|1.3770082651232698|0.2524557989168458|2.45|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 532.7816772460938 2 533.311815 1064.60908 0.42607 0.00022723 2.0066 0.0010702 2.4327 0.0012974 533.3126377161789 56.948 0.10509 60.443 60.424 60.53 3.4942 14 9 2 0 0 0 0.12354 1 12322 12322 1.4819 0 1 69647 15563 18 9974 9980 19105 19105 0.07935656320023554 KAKPKFIRGYS 11 Unmodified _KAKPKFIRGYS_ 0 0 0 REV__L1PA3_dup6760|chrX:97509511-97515511:-|1.5910565974324509|0.0794534900487284|4.32|151.0|11|1|sense REV__L1PA3_dup6760|chrX:97509511-97515511:-|1.5910565974324509|0.0794534900487284|4.32|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 432.2469177246094 3 432.25919 1293.75574 NaN NaN NaN NaN NaN NaN NaN 85.761 1 89.531 89.031 90.031 3.7701 0 0 0 0.38417 1 20346 20346 2.4348 1.325 1 + 15564 29561 9975 9981 19106 19106 0.12061333485144132 KAKPPAKK 8 Unmodified _KAKPPAKK_ 0 0 0 REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 MULTI-SECPEP UPN48_class_I_Rep_3 7 434.8819885253906 2 434.292362 866.570172 0.1537 6.6753E-05 -0.51042 -0.00022167 -0.35671 -0.00015492 434.29207072196084 63.277 0.14826 66.786 66.722 66.87 3.5091 24 12 2 0 0 0 0.72333 1 14118 14118 4.756 0 1 527620 + 15565 18876 9976 9982 19107 19107 0.13154975756310705 KAKPPAKK 8 Unmodified _KAKPPAKK_ 0 0 0 REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.071363 3.0992E-05 -0.27417 -0.00011907 -0.20281 -8.8077E-05 434.2921223681247 63.374 0.14562 66.832 66.736 66.882 3.4578 0.022954 0.00012829 NaN 4.756 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 331160 + 15566 18876 9976 9982 0.13154975756310705 KAKPWFVR 8 Unmodified _KAKPWFVR_ 0 0 0 REV__nc|ENSG00000171109|Q8IWA4-3|MFN1 REV__nc|ENSG00000171109|Q8IWA4-3|MFN1 MSMS UPN48_class_I_Rep_1 5 516.3098754882812 2 516.311087 1030.60762 NaN NaN NaN NaN NaN NaN NaN 97.09 1 100.7 100.2 101.2 3.6088 0 0 0 0.40625 1 23418 23418 2.3027 0 1 + 15567 32058 9977 9983 19108 19108 0.09354067021922674 KAKSFLVFF 9 Unmodified _KAKSFLVFF_ 0 0 0 ENST00000349736.9_1_20:463717-463870:-|nuORF ENST00000349736.9_1_20:463717-463870:-|nuORF ENST00000349736.9_1_20:463717-463870:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.820068359375 2 543.820953 1085.62735 NaN NaN NaN NaN NaN NaN NaN 43.228 1 46.99 46.49 47.49 3.7617 0 0 0 0.38478 1 8099 8099 4.3292 2.0265 1 15568 6268 9978 9984 19109 19109 0.08796398242020587 KAKSLKRLL 9 Unmodified _KAKSLKRLL_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.8662719726562 2 528.866226 1055.7179 0.45738 0.00024189 0.018861 9.9749E-06 0.47624 0.00025187 528.866150818803 108.28 0.49701 111.92 111.67 112.16 3.6355 171 47 4 0 0 0 0.48643 1 26573 26573 2.0598 0.21551 1 16820000 + 15569 32540 9979 9985 19110 19110 0.1922686729033103 KAKSLKRLL 9 Unmodified _KAKSLKRLL_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 528.866226 1055.7179 0.38677 0.00020455 0.17715 9.3687E-05 0.56392 0.00029824 528.8662767295081 108.42 0.17351 111.95 111.91 112.08 3.5333 0.0024588 0.00012638 NaN 2.0598 48 18 4 NaN NaN NaN NaN 0 NaN NaN 0 13776000 + 15570 32540 9979 9985 0.1922686729033103 KAKSLKRLL 9 Unmodified _KAKSLKRLL_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 528.866226 1055.7179 0.31128 0.00016462 0.23961 0.00012672 0.55089 0.00029135 528.8662803844579 108.41 0.22522 112.04 111.91 112.13 3.6313 0.092921 0.00019245 NaN 2.0598 54 18 5 NaN NaN NaN NaN 0 NaN NaN 0 7825900 + 15571 32540 9979 9985 0.1922686729033103 KAKSLKRLL 9 Unmodified _KAKSLKRLL_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 528.866226 1055.7179 0.41417 0.00021904 0.11531 6.0984E-05 0.52948 0.00028002 528.8662035197501 108.28 0.50912 111.95 111.72 112.23 3.6746 0.0065355 6.0971E-05 NaN 2.0598 198 59 4 NaN NaN NaN NaN 0 NaN NaN 0 40708000 + 15572 32540 9979 9985 0.1922686729033103 KAKTKYAGN 9 Unmodified _KAKTKYAGN_ 0 0 0 L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|133|3|sense L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|133|3|sense L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|133|3|sense MSMS UPN46_class_I_Rep_3 1 490.7815856933594 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 97.919 1 97.919 97.419 98.419 0 0 0 0 0.39518 1 23839 23839 1.8442 1.0506 1 15573 15113 9980 9986 19111 19111 0.05448876163075056 KAKTTKKIV 9 Unmodified _KAKTTKKIV_ 0 0 0 ENST00000487216.1_1_19:21416232-21416373:+|nuORF;ENST00000493084.1_1_8:87029050-87029317:+|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000487216.1_1_19:21416232-21416373:+|nuORF ENST00000487216.1_1_19:21416232-21416373:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 508.8443908691406 2 508.844959 1015.67537 -0.28111 -0.00014304 -0.12726 -6.4757E-05 -0.40837 -0.0002078 508.84479955782484 12.921 0.34097 16.371 16.261 16.602 3.45 43 27 2 0 0 0 0.11892 1 197 197 10.151 10.151 1 130380 15574 4182 9981 9987 19112 19112 0.1681547216207946 KAKTTKKIV 9 Unmodified _KAKTTKKIV_ 0 0 0 ENST00000487216.1_1_19:21416232-21416373:+|nuORF;ENST00000493084.1_1_8:87029050-87029317:+|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000487216.1_1_19:21416232-21416373:+|nuORF ENST00000487216.1_1_19:21416232-21416373:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 508.8442687988281 2 508.844959 1015.67537 -0.24893 -0.00012667 -0.16654 -8.4743E-05 -0.41547 -0.00021141 508.844769588014 12.938 0.26842 16.326 16.227 16.495 3.388 56 26 3 0 0 0 0.11817 1 194 194 10.8 10.8 1 106630 15575 4182 9981 9987 19113 19113 0.1681547216207946 KAKTTKKIV 9 Unmodified _KAKTTKKIV_ 0 0 0 ENST00000487216.1_1_19:21416232-21416373:+|nuORF;ENST00000493084.1_1_8:87029050-87029317:+|nuORF;ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL ENST00000487216.1_1_19:21416232-21416373:+|nuORF ENST00000487216.1_1_19:21416232-21416373:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 508.8443603515625 2 508.844959 1015.67537 -0.62459 -0.00031782 0.64366 0.00032753 0.019071 9.7044E-06 508.8453396934342 12.969 0.46262 16.342 16.203 16.666 3.3734 83 50 3 0 0 0 0.11817 1 194 194 10.8 10.8 1 85097 15576 4182 9981 9987 19114 19114 0.1681547216207946 KAKVLAYKP 9 Unmodified _KAKVLAYKP_ 0 0 0 REV__nc|ENSG00000188522|A6ND36-2|FAM83G REV__nc|ENSG00000188522|A6ND36-2|FAM83G MULTI-SECPEP UPN47_class_I_Rep_2 3 508.8276062011719 2 509.326402 1016.63825 0.33393 0.00017008 -3.763 -0.0019166 -3.4291 -0.0017465 509.32226595205844 103.17 0.067619 106.69 106.67 106.74 3.5231 12 8 2 0 0 0 0.12462 1 25090 25090 1.8442 0 1 70142 + 15577 20971 9982 9988 19115 19115 0.13059800616304074 KAKVLAYKP 9 Unmodified _KAKVLAYKP_ 0 0 0 REV__nc|ENSG00000188522|A6ND36-2|FAM83G REV__nc|ENSG00000188522|A6ND36-2|FAM83G MULTI-MATCH UPN47_class_I_Rep_1 2 2 509.326402 1016.63825 0.35 0.00017826 -5.6435 -0.0028744 -5.2935 -0.0026961 509.3220104248658 103 0.039314 106.78 106.75 106.79 3.7788 0.045314 -0.00090707 NaN 1.8442 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 55723 + 15578 20971 9982 9988 0.13059800616304074 KAKWKCKS 8 Unmodified _KAKWKCKS_ 0 0 0 L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|16|2|sense L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|16|2|sense L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 489.7809143066406 2 489.781305 977.548056 NaN NaN NaN NaN NaN NaN NaN 45.041 1 48.678 48.178 49.178 3.6372 0 0 0 0.40625 1 8579 8579 2.3027 1.5091 1 15579 10691 9983 9989 19116 19116 0.058384280162499635 KALDGGDR 8 Unmodified _KALDGGDR_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MSMS UPN48_class_I_Rep_3 7 416.22796630859375 2 416.219591 830.42463 NaN NaN NaN NaN NaN NaN NaN 24.623 1 28.392 27.892 28.892 3.769 0 0 0 0.40659 1 2877 2877 1.8442 1.1539 1 15580 2537 9984 9990 19117 19117 0.002634681694758001 KALDKALDAI 10 Unmodified _KALDKALDAI_ 0 0 0 ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN MULTI-MSMS UPN48_class_I_Rep_2 6 529.3155517578125 2 529.316232 1056.61791 0.51013 0.00027002 -0.18207 -9.6374E-05 0.32806 0.00017365 529.3160416294585 58.194 1.0835 61.693 61.239 62.322 3.4987 156 65 3 0 0 0 0.55448 1 12774 12774 4.897 0 1 1311400 15581 4207 9985 9991 19118 19118 0.0918658516582127 KALDKALDAI 10 Unmodified _KALDKALDAI_ 0 0 0 ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN MULTI-MSMS UPN48_class_I_Rep_3 7 529.3162231445312 2 529.316232 1056.61791 0.42219 0.00022347 -0.068025 -3.6006E-05 0.35416 0.00018746 529.3160752084761 57.915 0.96049 61.447 61.191 62.151 3.5317 160 62 3 0 0 0 0.55448 1 12713 12713 4.897 0 1 1004800 15582 4207 9985 9991 19119 19119 0.0918658516582127 KALEVFPEF 9 Unmodified _KALEVFPEF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_1 5 540.2921752929688 2 540.292225 1078.5699 0.45311 0.00024481 -0.24421 -0.00013194 0.20891 0.00011287 540.292022331107 66.887 0.8989 70.338 69.984 70.883 3.4516 98 59 2 0 0 0 0.12096 2 15357 15357;15395 29.841 15.002 1 471040 15583 3464 9986 9992 19120;19121 19120 0.03375511245803864 KALEVFPEF 9 Unmodified _KALEVFPEF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_2 6 540.2922973632812 2 540.292225 1078.5699 0.49349 0.00026663 -0.11114 -6.0048E-05 0.38235 0.00020658 540.2920628665637 66.713 0.81703 70.199 69.867 70.684 3.4866 120 53 3 0 0 0 0.11355 3 15292 15212;15292;15337 31.268 16.43 1 392410 15584 3464 9986 9992 19122;19123;19124 19123 0.03375511245803864 KALEVFPEF 9 Unmodified _KALEVFPEF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS UPN48_class_I_Rep_3 7 540.292236328125 2 540.292225 1078.5699 0.59047 0.00031902 -0.36083 -0.00019495 0.22963 0.00012407 540.2919285251551 66.62 0.85014 70.128 69.776 70.626 3.5077 122 57 3 0 0 0 0.20317 1 15194 15194 20.415 5.5763 1 469350 15585 3464 9986 9992 19125 19125 0.03375511245803864 KALFARIL 8 Unmodified _KALFARIL_ 0 0 0 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 MULTI-MSMS UPN48_class_I_Rep_2 6 466.30767822265625 2 466.308013 930.601472 0.14167 6.6064E-05 -0.23209 -0.00010823 -0.090417 -4.2162E-05 466.3077993567504 49.71 0.99824 53.405 52.789 53.788 3.6946 123 67 2 0 0 0 0.82752 1 9989 9989 24.674 1.5255 1 342320 + 15586 20522 9987 9993 19126 19126 0.1333954879042949 KALFKQRAAGK 11 Unmodified _KALFKQRAAGK_ 0 0 0 REV__MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|35|3|sense REV__MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|35|3|sense MSMS UPN46_class_I_Rep_3 1 609.3794555664062 2 609.377489 1216.74043 NaN NaN NaN NaN NaN NaN NaN 109.07 1 109.07 108.57 109.57 0 0 0 0 0.38417 1 26733 26733 8.7454 4.801 1 + 15587 31414 9988 9994 19127 19127 0.1407246668791231 KALGKHKER 9 Unmodified _KALGKHKER_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MSMS UPN46_class_I_Rep_3 1 533.8280029296875 2 533.827632 1065.64071 NaN NaN NaN NaN NaN NaN NaN 12.303 1 12.303 11.803 12.803 0 0 0 0 0.38073 1 77 77 5.2969 0.76802 1 15588 4439 9989 9995 19128 19128 0.11051649073965564 KALGKHKER 9 Unmodified _KALGKHKER_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-SECPEP UPN46_class_I_Rep_3 1 533.82763671875 2 533.827632 1065.64071 -0.26596 -0.00014198 -0.21094 -0.00011261 -0.4769 -0.00025458 533.8277111357914 12.193 0.40641 12.193 12.071 12.478 0 58 46 2 0 0 0 0.11892 1 47 47 10.151 4.8537 1 51711 15589 4439 9989 9995 19129 19129 0.11051649073965564 KALPLGYPHS 10 Unmodified _KALPLGYPHS_ 0 0 0 REV__nc|ENSG00000119508|Q92570-2|NR4A3 REV__nc|ENSG00000119508|Q92570-2|NR4A3 MSMS UPN47_class_I_Rep_1 2 542.2512817382812 2 541.803291 1081.59203 NaN NaN NaN NaN NaN NaN NaN 26.633 1 30.395 29.895 30.895 3.7624 0 0 0 0.53105 1 3838 3838 0.40072 0.40072 1 + 15590 18674 9990 9996 19130 19130 0.054497357142281544 KALSLRKSKAK 11 Unmodified _KALSLRKSKAK_ 0 0 0 REV__L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|57|3|sense REV__L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|57|3|sense MSMS UPN47_class_I_Rep_2 3 615.4048461914062 2 615.406247 1228.79794 NaN NaN NaN NaN NaN NaN NaN 29.651 1 33.144 32.644 33.644 3.4923 0 0 0 0.38417 1 4779 4779 0.26902 0 1 + 15591 27119 9991 9997 19131 19131 0.19269308893490233 KALTKPLEKLT 11 Unmodified _KALTKPLEKLT_ 0 0 0 REV__ERV24_Prim-int_dup60|chr2:62098411-62100323:-|1.0447999782681603|0.0132863287671436|6.3|150.0|48|3|sense REV__ERV24_Prim-int_dup60|chr2:62098411-62100323:-|1.0447999782681603|0.0132863287671436|6.3|150.0|48|3|sense MSMS UPN47_class_I_Rep_2 3 621.392822265625 2 621.395013 1240.77547 NaN NaN NaN NaN NaN NaN NaN 97.176 1 100.66 100.16 101.16 3.4836 0 0 0 0.38417 1 23866 23866 0.96228 0.50394 1 + 15592 23241 9992 9998 19132 19132 0.1647166470522734 KALVRRLI 8 Unmodified _KALVRRLI_ 0 0 0 REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 485.2734680175781 2 484.840011 967.665469 0.25551 0.00012388 0.10376 5.0308E-05 0.35927 0.00017419 484.84002653289224 108.65 0.26057 112.28 112.24 112.5 3.6355 35 23 2 0 0 0 0.72333 1 26781 26781 0.79363 0 1 7780100 + 15593 19951 9993 9999 19133 19133 0.1803432894737398 KALVRRLI 8 Unmodified _KALVRRLI_ 0 0 0 REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 484.840011 967.665469 0.23049 0.00011175 0.25324 0.00012278 0.48373 0.00023453 484.8401694082141 108.56 0.61186 112.24 112.18 112.79 3.6751 -0.022407 -4.0782E-05 NaN 0 103 69 2 NaN NaN NaN NaN 0 NaN NaN 0 26339000 + 15594 19951 9993 9999 0.1803432894737398 KAMKIPTY 8 Unmodified _KAMKIPTY_ 0 0 0 REV__L1MC2_dup5476|chr17:42372016-42372700:+|1.8242420512221784|0.0421862450577726|5.43|151.0|7|2|sense REV__L1MC2_dup5476|chr17:42372016-42372700:+|1.8242420512221784|0.0421862450577726|5.43|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 476.2700500488281 2 476.270238 950.525924 NaN NaN NaN NaN NaN NaN NaN 112.15 1 115.72 115.22 116.22 3.572 0 0 0 0.40746 1 27675 27675 0.69038 0 1 + 15595 26690 9994 10000 19134 19134 0.048682035478123 KAMRVDGIED 10 Unmodified _KAMRVDGIED_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-SECPEP UPN47_class_I_Rep_3 4 567.2537841796875 2 567.284605 1132.55466 0.36732 0.00020838 0.50546 0.00028674 0.87278 0.00049511 567.7861714990421 57.404 0.35165 60.572 60.371 60.722 3.1681 46 27 2 0 0 0 0.84575 1 13257 13257 6.2058 0.97511 1 95283 + 15596 19961 9995 10001 19135 19135 -0.006317236136965221 KANWFHFV 8 Unmodified _KANWFHFV_ 0 0 0 REV__MER85_dup854|chr19:11937884-11938021:-|1.916611816470269|0.0556998756165413|5.1|151.0|3|2|sense REV__MER85_dup854|chr19:11937884-11938021:-|1.916611816470269|0.0556998756165413|5.1|151.0|3|2|sense MSMS UPN47_class_I_Rep_3 4 524.771240234375 2 524.771794 1047.52904 NaN NaN NaN NaN NaN NaN NaN 25.332 1 28.683 28.183 29.183 3.3509 0 0 0 0.40604 1 3545 3545 2.5775 0.27475 1 + 15597 31572 9996 10002 19136 19136 0.007172147168375886 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MSMS UPN48_class_I_Rep_2 6 434.2921142578125 2 434.292362 866.570172 0.14208 6.1705E-05 -0.48167 -0.00020919 -0.33959 -0.00014748 434.29210727053595 63.462 0.28718 66.936 66.806 67.093 3.4738 48 24 2 0 0 0 0.82752 1 14292 14292 2.3027 0 1 313740 15598 4224 9997 10003 19137 19137 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-SECPEP UPN48_class_I_Rep_2 6 433.77215576171875 2 434.292362 866.570172 0.12114 5.2611E-05 -0.78078 -0.00033909 -0.65964 -0.00028648 434.29200556024347 66.269 0.18604 69.756 69.69 69.876 3.4866 20 13 2 0 0 0 0.72333 1 15151 15151 2.3027 0 1 218480 15599 4224 9997 10003 19138 19138 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-SECPEP UPN48_class_I_Rep_3 7 434.2919921875 2 434.292362 866.570172 0.1524 6.6186E-05 -0.66119 -0.00028715 -0.50879 -0.00022096 434.29201514598805 63.167 0.1638 66.676 66.558 66.722 3.5091 16 11 2 0 0 0 0.72333 1 14087 14087 2.3027 0 1 391000 15600 4224 9997 10003 19139 19139 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-SECPEP UPN48_class_I_Rep_3 7 434.29217529296875 2 434.292362 866.570172 0.1492 6.4798E-05 -0.52054 -0.00022607 -0.37134 -0.00016127 434.2920700147478 62.794 0.33904 66.303 66.015 66.354 3.5091 31 21 2 0 0 0 0.72333 1 13966 13966 2.3027 0 1 388030 15601 4224 9997 10003 19140 19140 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 434.292362 866.570172 0.023863 1.0363E-05 -0.27771 -0.00012061 -0.25385 -0.00011024 434.2922026644818 62.978 0.21866 66.338 66.254 66.473 3.3595 0.01467 4.5441E-05 NaN 2.3027 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 800630 15602 4224 9997 10003 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 434.292362 866.570172 -0.44347 -0.00019259 0.096532 4.1923E-05 -0.34693 -0.00015067 434.2922863908637 63.193 0.18547 66.363 66.308 66.494 3.1698 0.039748 0.0003705 NaN 2.3027 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 70319 15603 4224 9997 10003 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.079557 3.4551E-05 -0.50939 -0.00022123 -0.42984 -0.00018668 434.29212092854675 62.837 0.15084 66.3 66.219 66.37 3.4625 -0.023412 -0.00015579 NaN 2.3027 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 130230 15604 4224 9997 10003 0.13154975756310705 KAPPKKAK 8 Unmodified _KAPPKKAK_ 0 0 0 ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 ENSG00000166197|ENST00000605788|NOLC1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.292362 866.570172 0.14689 6.3793E-05 -0.61677 -0.00026786 -0.46988 -0.00020406 434.2919339754357 62.838 0.18506 66.312 66.23 66.415 3.4738 -0.010791 -0.00024906 NaN 2.3027 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 157840 15605 4224 9997 10003 0.13154975756310705 KAPPPPTQK 9 Unmodified _KAPPPPTQK_ 0 0 0 nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1;nc|ENSG00000089091|Q9NVP4-3|DZANK1 nc|ENSG00000089091|Q9NVP4-2|DZANK1 nc|ENSG00000089091|Q9NVP4-2|DZANK1 MSMS UPN48_class_I_Rep_2 6 482.2835693359375 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 35.852 1 39.539 39.039 40.039 3.6877 0 0 0 0.3967 1 5964 5964 1.4819 0 1 15606 1329 9998 10004 19141 19141 0.07214064168465484 KAPRKQLA 8 Unmodified _KAPRKQLA_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000273983|ENST00000614378|H3C8;ENSG00000277775|ENST00000618052|H3C7;ENSG00000197409|ENST00000356476|H3C4;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000168148|ENST00000366696|H3-4;ENST00000586518.1_1_17:73775126-73775255:-|nuORF ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN47_class_I_Rep_3 4 456.2922668457031 2 456.292894 910.571235 -1.0581 -0.00048282 0.05184 2.3654E-05 -1.0063 -0.00045917 456.2927544355177 12.976 0.27276 16.35 16.262 16.535 3.3734 59 29 3 0 0 0 0.82752 1 191 191 4.756 0 1 98273 15607 2758 9999 10005 19142 19142 0.11237190125211782 KAPRKQLATK 10 Unmodified _KAPRKQLATK_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000273983|ENST00000614378|H3C8;ENSG00000277775|ENST00000618052|H3C7;ENSG00000197409|ENST00000356476|H3C4;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000168148|ENST00000366696|H3-4;ENST00000586518.1_1_17:73775126-73775255:-|nuORF ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN47_class_I_Rep_1 2 570.8638305664062 2 570.864215 1139.71388 -0.14397 -8.2187E-05 -0.26412 -0.00015078 -0.40809 -0.00023296 570.8639879440102 12.766 0.23092 16.216 16.137 16.368 3.45 49 20 3 0 0 0 0.25045 1 152 152 38.615 17.078 1 99156 15608 2758 10000 10006 19143 19143 0.14960777796591174 KAPRKQLATK 10 Unmodified _KAPRKQLATK_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000273983|ENST00000614378|H3C8;ENSG00000277775|ENST00000618052|H3C7;ENSG00000197409|ENST00000356476|H3C4;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000168148|ENST00000366696|H3-4;ENST00000586518.1_1_17:73775126-73775255:-|nuORF ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN47_class_I_Rep_2 3 570.8640747070312 2 570.864215 1139.71388 0.048532 2.7705E-05 -0.41301 -0.00023577 -0.36448 -0.00020807 570.8638198875699 12.781 0.20411 16.169 16.097 16.301 3.388 51 22 3 0 0 0 0.46742 1 151 151 14.405 6.7964 1 89253 15609 2758 10000 10006 19144 19144 0.14960777796591174 KAPRKQLATK 10 Unmodified _KAPRKQLATK_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000273983|ENST00000614378|H3C8;ENSG00000277775|ENST00000618052|H3C7;ENSG00000197409|ENST00000356476|H3C4;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000168148|ENST00000366696|H3-4;ENST00000586518.1_1_17:73775126-73775255:-|nuORF ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN47_class_I_Rep_3 4 570.8639526367188 2 570.864215 1139.71388 -0.44101 -0.00025176 0.077834 4.4433E-05 -0.36318 -0.00020733 570.8640611907132 12.797 0.25387 16.17 16.081 16.335 3.3734 56 28 3 0 0 0 0.55448 1 148 148 4.897 0.95262 1 85187 15610 2758 10000 10006 19145 19145 0.14960777796591174 KAPRSRGV 8 Unmodified _KAPRSRGV_ 0 0 0 REV__ENST00000322038.5_2_18:72922772-72923027:+|nuORF REV__ENST00000322038.5_2_18:72922772-72923027:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.7669372558594 2 435.767043 869.519533 -0.024577 -1.071E-05 0.023149 1.0088E-05 -0.0014273 -6.2198E-07 435.7669555585428 78.887 0.87217 82.422 81.991 82.863 3.5352 211 108 3 0 0 0 0.82752 1 18776 18776 4.3292 0 1 398400 + 15611 21744 10001 10007 19146 19146 0.07955446431333257 KAPRSRGV 8 Unmodified _KAPRSRGV_ 0 0 0 REV__ENST00000322038.5_2_18:72922772-72923027:+|nuORF REV__ENST00000322038.5_2_18:72922772-72923027:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 435.767043 869.519533 0.13888 6.0518E-05 -0.12379 -5.3943E-05 0.015089 6.5754E-06 435.7668800022102 82.339 0.34422 82.339 82.272 82.616 0 -0.034466 -4.6018E-05 NaN 4.3292 77 29 4 NaN NaN NaN NaN 0 NaN NaN 0 551480 + 15612 21744 10001 10007 0.07955446431333257 KAPVPTGEVYF 11 Unmodified _KAPVPTGEVYF_ 0 0 0 ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX ENSG00000127022|ENST00000247461|CANX ENSG00000127022|ENST00000247461|CANX MSMS UPN47_class_I_Rep_1 2 604.32080078125 2 604.321514 1206.62847 NaN NaN NaN NaN NaN NaN NaN 53.712 1 57.24 56.74 57.74 3.5278 0 0 0 0.38417 1 12056 12056 2.4985 0.84587 1 15613 2559 10002 10008 19147 19147 0.03342567820277509 KAQLLARVNK 10 Unmodified _KAQLLARVNK_ 0 0 0 nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9 nc|ENSG00000100505|Q9C026-5|TRIM9 nc|ENSG00000100505|Q9C026-5|TRIM9 MULTI-MSMS UPN46_class_I_Rep_3 1 570.8638305664062 2 570.864215 1139.71388 -0.1289 -7.3585E-05 -0.19999 -0.00011417 -0.32889 -0.00018775 570.8641601713343 12.776 0.13064 12.776 12.714 12.845 0 17 9 3 0 0 0 0.56078 1 204 204 3.2813 0 1 48121 15614 1511 10003 10009 19148 19148 0.14960777796591174 KAQNKPFYV 9 Unmodified _KAQNKPFYV_ 0 0 0 ENSG00000111361|ENST00000424014|EIF2B1 ENSG00000111361|ENST00000424014|EIF2B1 ENSG00000111361|ENST00000424014|EIF2B1 MSMS UPN47_class_I_Rep_1 2 547.80419921875 2 547.803291 1093.59203 NaN NaN NaN NaN NaN NaN NaN 82.895 1 86.433 85.933 86.933 3.5386 0 0 0 0.38299 1 20719 20719 4.756 0.42677 1 15615 1971 10004 10010 19149 19149 0.04897735714234841 KARFAIII 8 Unmodified _KARFAIII_ 0 0 0 ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 466.3076477050781 2 466.308013 930.601472 0.065669 3.0622E-05 -0.13119 -6.1174E-05 -0.065519 -3.0552E-05 466.3078216959807 49.858 1.1137 53.382 52.828 53.941 3.5246 142 68 3 0 0 0 0.82752 4 10030 10030;10069;10115;10208 30.225 0 1 298410 15616 1572 10005 10011 19150;19151;19152;19153 19150 0.1333954879042949 KARFAIII 8 Unmodified _KARFAIII_ 0 0 0 ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 466.3077697753906 2 466.308013 930.601472 0.14167 6.6064E-05 -0.23209 -0.00010823 -0.090417 -4.2162E-05 466.3077993567504 49.71 0.99824 53.405 52.789 53.788 3.6946 123 67 2 0 0 0 0.82752 4 9942 9942;10029;10070;10112 24.674 0 1 342320 15617 1572 10005 10011 19154;19155;19156;19157 19154 0.1333954879042949 KARFAIII 8 Unmodified _KARFAIII_ 0 0 0 ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron ENSG00000101413.12,RPRD1B,chr20,+,I1.1,38034099,38040434|26|6.15|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 466.3076477050781 2 466.308013 930.601472 0.094885 4.4245E-05 -0.16358 -7.6277E-05 -0.068692 -3.2032E-05 466.3078148257422 49.587 1.0202 53.216 52.85 53.87 3.6291 99 66 3 0 0 0 0.82752 3 9953 9953;9992;10054 24.674 0 1 279500 15618 1572 10005 10011 19158;19159;19160 19158 0.1333954879042949 KARFHLLRQW 10 Unmodified _KARFHLLRQW_ 0 0 0 MSTD-int_dup531|chr10:92672129-92672360:-|1.0358086508418307|0.0219505761387396|5.56|151.0|9|3|sense MSTD-int_dup531|chr10:92672129-92672360:-|1.0358086508418307|0.0219505761387396|5.56|151.0|9|3|sense MSTD-int_dup531|chr10:92672129-92672360:-|1.0358086508418307|0.0219505761387396|5.56|151.0|9|3|sense MSMS UPN47_class_I_Rep_2 3 452.2668762207031 3 452.266679 1353.77821 NaN NaN NaN NaN NaN NaN NaN 28.877 1 32.375 31.875 32.875 3.4986 0 0 0 0.53105 1 4544 4544 0.15932 0 1 15619 16607 10006 10012 19161 19161 0.1154697767340167 KARHKIGP 8 Unmodified _KARHKIGP_ 0 0 0 L1ME2_dup12249|chr20:36925506-36926589:+|2.3151667523162605|0.0958268255798873|4.59|151.0|12|1|sense L1ME2_dup12249|chr20:36925506-36926589:+|2.3151667523162605|0.0958268255798873|4.59|151.0|12|1|sense L1ME2_dup12249|chr20:36925506-36926589:+|2.3151667523162605|0.0958268255798873|4.59|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 453.78411865234375 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 50.84 1 54.056 53.556 54.556 3.2163 0 0 0 0.40581 1 11266 11266 2.8892 2.0956 1 15620 12469 10007 10013 19162 19162 0.09936323328031449 KARIPPLL 8 Unmodified _KARIPPLL_ 0 0 0 L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|36|2|sense L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|36|2|sense L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|36|2|sense MSMS UPN46_class_I_Rep_3 1 454.3131103515625 2 454.308013 906.601472 NaN NaN NaN NaN NaN NaN NaN 28.044 1 28.044 27.544 28.544 0 0 0 0 0.40738 1 4250 4250 0.79363 0 1 15621 13582 10008 10014 19163 19163 0.14443548790427485 KARIPPLL 8 Unmodified _KARIPPLL_ 0 0 0 L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|36|2|sense L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|36|2|sense L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 454.3145751953125 2 454.308013 906.601472 NaN NaN NaN NaN NaN NaN NaN 109.5 1 113.11 112.61 113.61 3.6046 0 0 0 0.40738 1 27018 27018 0.79363 0 1 15622 13582 10008 10014 19164 19164 0.14443548790427485 KARKKFVPG 9 Unmodified _KARKKFVPG_ 0 0 0 CON__ENSEMBL:ENSBTAP00000031360 CON__ENSEMBL:ENSBTAP00000031360 CON__ENSEMBL:ENSBTAP00000031360 MSMS UPN48_class_I_Rep_2 6 515.828369140625 2 515.829643 1029.64473 NaN NaN NaN NaN NaN NaN NaN 73.753 1 77.331 76.831 77.831 3.5779 0 0 0 0.39326 1 17329 17329 2.3027 0 1 + 15623 627 10009 10015 19165 19165 0.1310973856768669 KARKLKKIV 9 Unmodified _KARKLKKIV_ 0 0 0 nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 MSMS UPN46_class_I_Rep_3 1 542.7020874023438 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 115.14 1 115.14 114.64 115.64 0 0 0 0 0.40038 1 28476 28476 0.6015 0 1 15624 2087 10010 10016 19166 19166 0.22711146561300666 KARKLKKIV 9 Unmodified _KARKLKKIV_ 0 0 0 nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 MSMS UPN46_class_I_Rep_3 1 542.3904418945312 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 117.07 1 117.07 116.57 117.57 0 0 0 0 0.40038 1 29006 29006 0.6015 0 1 15625 2087 10010 10016 19167 19167 0.22711146561300666 KARKLKKIV 9 Unmodified _KARKLKKIV_ 0 0 0 nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 MSMS UPN46_class_I_Rep_3 1 542.3899536132812 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 118.12 1 118.12 117.62 118.62 0 0 0 0 0.40038 1 29307 29307 0.6015 0 1 15626 2087 10010 10016 19168 19168 0.22711146561300666 KARKRHHRR 9 Unmodified _KARKRHHRR_ 0 0 0 ENST00000488757.5_1_6:29644775-29644817:-|nuORF ENST00000488757.5_1_6:29644775-29644817:-|nuORF ENST00000488757.5_1_6:29644775-29644817:-|nuORF MSMS UPN46_class_I_Rep_3 1 622.8882446289062 2 622.887213 1243.75987 NaN NaN NaN NaN NaN NaN NaN 80.298 1 80.298 79.798 80.798 0 0 0 0 0.4007 1 18910 18910 0.52476 0 1 15627 7051 10011 10017 19169 19169 0.14774280542042106 KARPKPGK 8 Unmodified _KARPKPGK_ 0 0 0 L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|40|3|sense L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|40|3|sense L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|40|3|sense MSMS UPN46_class_I_Rep_3 1 441.2973937988281 2 441.287611 880.56067 NaN NaN NaN NaN NaN NaN NaN 24.949 1 24.949 24.449 25.449 0 0 0 0 0.40746 1 3349 3349 0.69038 0 1 15628 12505 10012 10018 19170 19170 0.11561207470799673 KARQFSTK 8 Unmodified _KARQFSTK_ 0 0 0 REV__ENSG00000214285|ENST00000398023|NPS REV__ENSG00000214285|ENST00000398023|NPS MSMS UPN47_class_I_Rep_3 4 483.6464538574219 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 75.741 1 78.998 78.498 79.498 3.2573 0 0 0 0.40625 1 18806 18806 2.3027 0.4585 1 + 15629 21259 10013 10019 19171 19171 0.06172295882947765 KARRAKKAKA 10 Unmodified _KARRAKKAKA_ 0 0 0 nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 MSMS UPN46_class_I_Rep_3 1 564.3795166015625 2 564.377823 1126.74109 NaN NaN NaN NaN NaN NaN NaN 40.556 1 40.556 40.056 41.056 0 0 0 0 0.53105 1 7878 7878 0.40072 0 1 15630 1698 10014 10020 19172 19172 0.18279306127647033 KARRKKSQD 9 Unmodified _KARRKKSQD_ 0 0 0 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 MSMS UPN47_class_I_Rep_3 4 559.2655029296875 2 558.833446 1115.65234 NaN NaN NaN NaN NaN NaN NaN 14.876 1 18.242 17.742 18.742 3.3659 0 0 0 0.40098 1 652 652 0.45834 0 1 15631 3506 10015 10021 19173 19173 0.0991384609733359 KARRVLRP 8 Unmodified _KARRVLRP_ 0 0 0 L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|41|2|sense L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|41|2|sense L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|41|2|sense MSMS UPN47_class_I_Rep_2 3 498.2893981933594 2 498.332885 994.651216 NaN NaN NaN NaN NaN NaN NaN 112.58 1 116.09 115.59 116.59 3.5171 0 0 0 0.40738 1 27392 27392 0.79363 0 1 15632 14234 10016 10022 19174 19174 0.15367676519076667 KASKGRRRLS 10 Unmodified _KASKGRRRLS_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539.14,ASH1L,chr1,-,I7.1,155440594,155459796|59|13.72|2|intron;ENSG00000116539.14,ASH1L,chr1,-,I7.1,155440594,155459796|59|13.72|1|intron ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-SECPEP UPN48_class_I_Rep_3 7 579.3621826171875 2 579.862538 1157.71052 0.48625 0.00028196 2.1453 0.001244 2.6315 0.0015259 579.8639630276789 108.6 0.029251 112.27 112.25 112.27 3.6751 5 3 2 0 0 0 0.84575 1 25709 25709 8.1555 3.2585 1 7918000 15633 2187 10017 10023 19175 19175 0.13797527742599414 KASLVEVRS 9 Unmodified _KASLVEVRS_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS UPN46_class_I_Rep_3 1 494.792724609375 2 494.792924 987.571294 -0.025558 -1.2646E-05 0.030038 1.4863E-05 0.0044808 2.2171E-06 494.7929367579599 26.725 0.96405 26.725 26.406 27.37 0 152 79 3 0 0 0 0.39745 1 3807 3807 8.1555 0 1 177240 15634 4883 10018 10024 19176 19176 0.07701145334567627 KASNILKLLK 10 Unmodified _KASNILKLLK_ 0 0 0 REV__L1MA2_dup1715|chr4:73174142-73175074:+|1.2518848106779272|0.0120181655057612|6.7|151.0|15|2|sense REV__L1MA2_dup1715|chr4:73174142-73175074:+|1.2518848106779272|0.0120181655057612|6.7|151.0|15|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 564.3790283203125 2 564.379166 1126.74378 0.43679 0.00024651 0.14102 7.9589E-05 0.57781 0.0003261 564.3789873438357 107.96 0.24826 111.64 111.41 111.66 3.6813 57 25 3 0 0 0 0.84575 1 25486 25486 2.9952 0 1 9201600 + 15635 24836 10019 10025 19177 19177 0.18547716741932163 KASRNHDTW 9 Unmodified _KASRNHDTW_ 0 0 0 ENST00000393145.5_1_16:89219466-89219556:+|nuORF ENST00000393145.5_1_16:89219466-89219556:+|nuORF ENST00000393145.5_1_16:89219466-89219556:+|nuORF MSMS UPN48_class_I_Rep_2 6 557.7545776367188 2 557.773054 1113.53155 NaN NaN NaN NaN NaN NaN NaN 119.6 1 123.26 122.76 123.76 3.6652 0 0 0 0.39428 1 28704 28704 2.0598 0.40713 1 15636 6531 10020 10026 19178 19178 -0.020669816161444032 KASVITQVFH 10 Unmodified _KASVITQVFH_ 0 0 0 HDLBP|p.A278Lfs*25|1|0.06|ENSG00000115677|chr2:241256225-241256225|C/-|frameshift_variant;nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP HDLBP|p.A278Lfs*25|1|0.06|ENSG00000115677|chr2:241256225-241256225|C/-|frameshift_variant HDLBP|p.A278Lfs*25|1|0.06|ENSG00000115677|chr2:241256225-241256225|C/-|frameshift_variant MSMS UPN47_class_I_Rep_3 4 565.3214721679688 2 565.321848 1128.62914 NaN NaN NaN NaN NaN NaN NaN 107.89 1 111.43 110.93 111.93 3.5382 0 0 0 0.53105 1 26360 26360 6.2058 0.47393 1 15637 2136 10021 10027 19179 19179 0.0699740725999618 KATQTPLSW 9 Unmodified _KATQTPLSW_ 0 0 0 ENSG00000121104|ENST00000240364|FAM117A ENSG00000121104|ENST00000240364|FAM117A ENSG00000121104|ENST00000240364|FAM117A MSMS UPN46_class_I_Rep_3 1 516.1163330078125 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 49.728 1 49.728 49.228 50.228 0 0 0 0 0.3967 1 10459 10459 1.4819 0.15237 1 15638 2350 10022 10028 19180 19180 0.030694564432451443 KATSKGDIPTK 11 Unmodified _KATSKGDIPTK_ 0 0 0 ENST00000473054.1_1_14:68805457-68806021:-|nuORF ENST00000473054.1_1_14:68805457-68806021:-|nuORF ENST00000473054.1_1_14:68805457-68806021:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 573.8312377929688 2 573.32987 1144.64519 0.40821 0.00023404 -0.41768 -0.00023947 -0.0094636 -5.4258E-06 573.3294175141109 89.265 1.0146 92.89 92.069 93.084 3.6255 166 122 2 0 0 0 0.63951 1 21393 21393 4.1895 0.90819 1 195980 15639 6938 10023 10029 19181 19181 0.0786506870622361 KAVFVLRM 8 Unmodified _KAVFVLRM_ 0 0 0 ENST00000484123.1_1_2:73280646-73285661:-|nuORF ENST00000484123.1_1_2:73280646-73285661:-|nuORF ENST00000484123.1_1_2:73280646-73285661:-|nuORF MSMS UPN47_class_I_Rep_1 2 482.2942810058594 2 482.294048 962.573543 NaN NaN NaN NaN NaN NaN NaN 35.896 1 39.572 39.072 40.072 3.6762 0 0 0 0.40625 1 6636 6636 2.3027 0 1 15640 7017 10024 10030 19182 19182 0.09075902538688752 KAVGGPWRL 9 Unmodified _KAVGGPWRL_ 0 0 0 REV__ENST00000461862.5_1_1:151138557-151138626:+|nuORF REV__ENST00000461862.5_1_1:151138557-151138626:+|nuORF MSMS UPN48_class_I_Rep_2 6 492.2923278808594 2 492.292894 982.571235 NaN NaN NaN NaN NaN NaN NaN 82.526 1 86.195 85.695 86.695 3.669 0 0 0 0.37476 1 19604 19604 6.7232 2.7788 1 + 15641 22437 10025 10031 19183 19183 0.07925190125229165 KAVIPYPVP 9 Unmodified _KAVIPYPVP_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|159|3|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|159|3|anti-sense MSMS UPN46_class_I_Rep_3 1 492.4657897949219 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 57.532 1 57.532 57.032 58.032 0 0 0 0 0.39326 1 12610 12610 2.3027 0.4585 1 + 15642 24128 10026 10032 19184 19184 0.09316422833660454 KAVKKIFVLV 10 Unmodified _KAVKKIFVLV_ 0 0 0 REV__ENSG00000101017|ENST00000372285|CD40 REV__ENSG00000101017|ENST00000372285|CD40 MSMS UPN47_class_I_Rep_3 4 572.8926391601562 2 572.894452 1143.77435 NaN NaN NaN NaN NaN NaN NaN 108.29 1 111.83 111.33 112.33 3.5382 0 0 0 0.53105 1 26490 26490 1.6526 1.1279 1 + 15643 18142 10027 10033 19185 19185 0.2082149512698379 KAVKLYVF 8 Unmodified _KAVKLYVF_ 0 0 0 REV__nc|ENSG00000075711|Q12959-8|DLG1 REV__nc|ENSG00000075711|Q12959-8|DLG1 MSMS UPN48_class_I_Rep_1 5 484.7882385253906 2 484.302396 966.590239 NaN NaN NaN NaN NaN NaN NaN 63.801 1 67.258 66.758 67.758 3.4578 0 0 0 0.40746 1 14392 14392 0.69038 0 1 + 15644 17861 10028 10034 19186 19186 0.10560726696269285 KAVQQSYLGL 10 Unmodified _KAVQQSYLGL_ 0 0 0 REV__L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|97|3|anti-sense REV__L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.3150024414062 2 553.813856 1105.61316 -0.0087071 -4.8221E-06 0.11824 6.5481E-05 0.10953 6.0659E-05 553.8137783107231 40.627 1.3306 43.864 43.37 44.7 3.2372 212 94 3 0 0 0 0.55448 1 8040 8040 4.897 0 1 545550 + 15645 24167 10029 10035 19187 19187 0.06457701023077789 KAVRREPS 8 Unmodified _KAVRREPS_ 0 0 0 THE1C-int_dup623|chr5:88855880-88857517:+|1.9402736907476796|0.0843475941996828|4.52|150.0|13|1|sense THE1C-int_dup623|chr5:88855880-88857517:+|1.9402736907476796|0.0843475941996828|4.52|150.0|13|1|sense THE1C-int_dup623|chr5:88855880-88857517:+|1.9402736907476796|0.0843475941996828|4.52|150.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 471.7949523925781 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 115.68 1 119.14 118.64 119.64 3.462 0 0 0 0.40738 1 28452 28452 0.79363 0 1 15646 32946 10030 10036 19188 19188 0.06755411740186901 KAVVQGHFCW 10 Unmodified _KAVVQGHFCW_ 0 0 0 ENST00000448864.5_1_3:197677156-197678062:+|nuORF ENST00000448864.5_1_3:197677156-197678062:+|nuORF ENST00000448864.5_1_3:197677156-197678062:+|nuORF MSMS UPN47_class_I_Rep_1 2 587.7931518554688 2 587.794943 1173.57533 NaN NaN NaN NaN NaN NaN NaN 30.834 1 34.579 34.079 35.079 3.7449 0 0 0 0.53105 1 5091 5091 1.6526 0.32309 1 15647 6802 10031 10037 19189 19189 -0.004510884433557294 KAWLSFSFSG 10 Unmodified _KAWLSFSFSG_ 0 0 0 ENST00000462201.1_1_7:50348444-50444544:+|nuORF ENST00000462201.1_1_7:50348444-50444544:+|nuORF ENST00000462201.1_1_7:50348444-50444544:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 565.2877807617188 2 565.287474 1128.5604 0.52449 0.00029649 0.18356 0.00010377 0.70805 0.00040025 565.287379901311 64.555 0.73781 68.03 67.706 68.444 3.4743 120 55 3 0 0 0 0.84575 1 14546 14546 12.241 0 1 287490 15648 6865 10032 10038 19190 19190 0.001257429602674165 KAWLSFSFSG 10 Unmodified _KAWLSFSFSG_ 0 0 0 ENST00000462201.1_1_7:50348444-50444544:+|nuORF ENST00000462201.1_1_7:50348444-50444544:+|nuORF ENST00000462201.1_1_7:50348444-50444544:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 565.287841796875 2 565.287474 1128.5604 0.46842 0.00026479 0.19201 0.00010854 0.66043 0.00037333 565.2873656662244 64.409 0.71072 67.917 67.589 68.299 3.5083 136 63 3 0 0 0 0.4965 1 14539 14539 12.241 0.60036 1 299590 15649 6865 10032 10038 19191 19191 0.001257429602674165 KAWLTRHS 8 Unmodified _KAWLTRHS_ 0 0 0 nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C nc|ENSG00000171988|Q15652-2|JMJD1C nc|ENSG00000171988|Q15652-2|JMJD1C MSMS UPN48_class_I_Rep_3 7 499.781982421875 2 499.780151 997.545748 NaN NaN NaN NaN NaN NaN NaN 19.575 1 23.196 22.696 23.696 3.6215 0 0 0 0.40604 1 1504 1504 2.5775 0 1 15650 4554 10033 10039 19192 19192 0.04687715602779008 KAWQRQFLRMK 11 Unmodified _KAWQRQFLRMK_ 0 0 0 REV__ENST00000484153.1_1_1:11826815-11837330:+|nuORF REV__ENST00000484153.1_1_1:11826815-11837330:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.9508361816406 3 497.950362 1490.82926 NaN NaN NaN NaN NaN NaN NaN 21.424 1 24.977 24.477 25.477 3.5533 0 0 0 0.38417 1 1955 1955 1.2148 0 1 + 15651 22590 10034 10040 19193 19193 0.10347558655917055 KAYFLGYMVH 10 Unmodified _KAYFLGYMVH_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MSMS UPN46_class_I_Rep_3 1 614.8135375976562 2 614.812802 1227.61105 NaN NaN NaN NaN NaN NaN NaN 54.463 1 54.463 53.963 54.963 0 0 0 0 0.53105 1 11793 11793 1.8442 0.36234 1 15652 884 10035 10041 19194 19194 0.00634949013624464 KAYFLGYMVH 10 Unmodified _KAYFLGYMVH_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MSMS UPN48_class_I_Rep_2 6 614.8134765625 2 614.812802 1227.61105 NaN NaN NaN NaN NaN NaN NaN 50.112 1 53.807 53.307 54.307 3.6946 0 0 0 0.53105 1 10197 10197 1.8442 0.19162 1 15653 884 10035 10041 19195 19195 0.00634949013624464 KAYHFWVFV 9 Unmodified _KAYHFWVFV_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MSMS UPN48_class_I_Rep_1 5 598.8184204101562 2 598.816202 1195.61785 NaN NaN NaN NaN NaN NaN NaN 62.479 1 65.941 65.441 66.441 3.4625 0 0 0 0.39326 1 13986 13986 2.3027 0.21673 1 15654 5826 10036 10042 19196 19196 0.02786629956494835 KAYHWDLIE 9 Unmodified _KAYHWDLIE_ 0 0 0 L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|110|3|anti-sense L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|110|3|anti-sense L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|110|3|anti-sense MSMS UPN48_class_I_Rep_3 7 587.796142578125 2 587.798206 1173.58186 NaN NaN NaN NaN NaN NaN NaN 45.266 1 48.903 48.403 49.403 3.6372 0 0 0 0.39518 1 8648 8648 1.8442 0 1 15655 12422 10037 10043 19197 19197 0.0020112798899845075 KAYKDKNKY 9 Unmodified _KAYKDKNKY_ 0 0 0 ENSG00000111670|ENST00000299314|GNPTAB;ENST00000549194.1_1_12:102150985-102153918:-|nuORF ENSG00000111670|ENST00000299314|GNPTAB ENSG00000111670|ENST00000299314|GNPTAB MULTI-MSMS UPN48_class_I_Rep_3 7 579.806640625 2 579.319306 1156.62406 0.39728 0.00023015 -0.40728 -0.00023595 -0.010002 -5.7946E-06 579.3190699518311 40.211 0.70823 43.862 43.399 44.107 3.6509 118 68 2 0 0 0 0.17897 1 7132 7132 22.736 5.6234 1 147070 15656 1982 10038 10044 19198 19198 0.05201103397371298 KCARLFRFPK 10 Unmodified _KCARLFRFPK_ 0 0 0 ENST00000233813.4_1_2:217538645-217538780:-|nuORF ENST00000233813.4_1_2:217538645-217538780:-|nuORF ENST00000233813.4_1_2:217538645-217538780:-|nuORF MSMS UPN46_class_I_Rep_3 1 422.581787109375 3 422.581499 1264.72267 NaN NaN NaN NaN NaN NaN NaN 92.378 1 92.378 91.878 92.878 0 0 0 0 0.53105 1 22354 22354 0.77653 0.078866 1 15657 5889 10039 10045 19199 19199 0.10089428161404612 KCCHHCFPCC 10 Unmodified _KCCHHCFPCC_ 0 0 0 ENSG00000183206|ENST00000358970|POTEC;ENSG00000278522|ENST00000611217|POTEB3;nc|ENSG00000278522|A0JP26-2|POTEB3 ENSG00000183206|ENST00000358970|POTEC ENSG00000183206|ENST00000358970|POTEC MSMS UPN48_class_I_Rep_2 6 590.7026977539062 2 590.702502 1179.39045 NaN NaN NaN NaN NaN NaN NaN 107.36 1 111.04 110.54 111.54 3.6783 0 0 0 0.53105 1 25374 25374 0 0 1 15658 4988 10040 10046 19200 19200 -0.192068021729483 KCEIWRVF 8 Unmodified _KCEIWRVF_ 0 0 0 REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|244|3|anti-sense REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|244|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.6480102539062 2 540.786587 1079.55862 NaN NaN NaN NaN NaN NaN NaN 57.722 1 57.722 57.222 58.222 0 0 0 0 0.39996 1 12664 12664 7.9102 2.6795 1 + 15659 30189 10041 10047 19201 19201 0.022024106706794555 KCEIWRVF 8 Unmodified _KCEIWRVF_ 0 0 0 REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|244|3|anti-sense REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|244|3|anti-sense MSMS UPN47_class_I_Rep_1 2 540.7861938476562 2 540.786587 1079.55862 NaN NaN NaN NaN NaN NaN NaN 52.503 1 56.061 55.561 56.561 3.5585 0 0 0 0.40472 1 11687 11687 4.3292 1.334 1 + 15660 30189 10041 10047 19202 19202 0.022024106706794555 KCEWLCHLL 9 Unmodified _KCEWLCHLL_ 0 0 0 REV__L1M4_dup13059|chr10:72513151-72513938:-|1.8724148971825771|0.0868693545939289|4.43|151.0|12|1|sense REV__L1M4_dup13059|chr10:72513151-72513938:-|1.8724148971825771|0.0868693545939289|4.43|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 572.784912109375 2 572.78573 1143.55691 NaN NaN NaN NaN NaN NaN NaN 57.023 1 60.556 60.056 61.056 3.5333 0 0 0 0.39428 1 12297 12297 2.0598 0 1 + 15661 24357 10042 10048 19203 19203 -0.009129664096008128 KCFFALIQ 8 Unmodified _KCFFALIQ_ 0 0 0 REV__ENSG00000177465|ENST00000326303|ACOT4 REV__ENSG00000177465|ENST00000326303|ACOT4 MSMS UPN48_class_I_Rep_3 7 485.2672119140625 2 485.264956 968.515359 NaN NaN NaN NaN NaN NaN NaN 95.835 1 99.743 99.243 100.24 3.9084 0 0 0 0.40604 1 22715 22715 2.5775 0 1 + 15662 20621 10043 10049 19204 19204 0.02984220893404199 KCFFCIYY 8 Unmodified _KCFFCIYY_ 0 0 0 L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7431640625 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 23.525 1 27.229 26.729 27.729 3.7042 0 0 0 0.40738 1 2923 2923 0.79363 0 1 15663 15163 10044 10050 19205 19205 -0.06787131595251594 KCFFCIYY 8 Unmodified _KCFFCIYY_ 0 0 0 L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7433471679688 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 21.602 1 25.026 24.526 25.526 3.4241 0 0 0 0.40738 1 2439 2439 0.79363 0 1 15664 15163 10044 10050 19206 19206 -0.06787131595251594 KCFFCIYY 8 Unmodified _KCFFCIYY_ 0 0 0 L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7431640625 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 43.296 1 46.654 46.154 47.154 3.358 0 0 0 0.40738 1 8917 8917 0.79363 0 1 15665 15163 10044 10050 19207 19207 -0.06787131595251594 KCFFCIYY 8 Unmodified _KCFFCIYY_ 0 0 0 L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_3 4 543.7421264648438 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 24.619 1 27.97 27.47 28.47 3.3509 0 0 0 0.40738 1 3332 3332 0.79363 0 1 15666 15163 10044 10050 19208 19208 -0.06787131595251594 KCFFCIYY 8 Unmodified _KCFFCIYY_ 0 0 0 L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN48_class_I_Rep_2 6 543.7438354492188 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 24.565 1 28.202 27.702 28.702 3.6378 0 0 0 0.40604 1 2872 2872 2.5775 0.27475 1 15667 15163 10044 10050 19209 19209 -0.06787131595251594 KCFFFHQFK 9 Unmodified _KCFFFHQFK_ 0 0 0 REV__L1ME3A_dup12748|chr15:64638049-64638484:-|1.035818197785191|0.0062287452383822|7.38|151.0|11|3|sense REV__L1ME3A_dup12748|chr15:64638049-64638484:-|1.035818197785191|0.0062287452383822|7.38|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 616.3088989257812 2 616.307687 1230.60082 NaN NaN NaN NaN NaN NaN NaN 46.386 1 49.63 49.13 50.13 3.2439 0 0 0 0.39518 1 9919 9919 1.8442 0.36234 1 + 15668 27993 10045 10051 19210 19210 -0.005256139209677713 KCFKKVDK 8 Unmodified _KCFKKVDK_ 0 0 0 ENSG00000053254.16,FOXN3,chr14,-,I13.1,89264056,89280949|35|8.82|2|intron;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3 ENSG00000053254.16,FOXN3,chr14,-,I13.1,89264056,89280949|35|8.82|2|intron ENSG00000053254.16,FOXN3,chr14,-,I13.1,89264056,89280949|35|8.82|2|intron MSMS UPN48_class_I_Rep_1 5 498.2879638671875 2 498.288963 994.563372 NaN NaN NaN NaN NaN NaN NaN 73.322 1 76.803 76.303 77.303 3.4812 0 0 0 0.40643 1 17270 17270 2.0598 0 1 15669 927 10046 10052 19211 19211 0.06587294813436984 KCFLFLFFL 9 Unmodified _KCFLFLFFL_ 0 0 0 HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|154|3|anti-sense;HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|196|3|anti-sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|154|3|anti-sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|154|3|anti-sense MSMS UPN46_class_I_Rep_3 1 589.3297729492188 2 589.327556 1176.64056 NaN NaN NaN NaN NaN NaN NaN 34.492 1 34.492 33.992 34.992 0 0 0 0 0.40038 1 6165 6165 0.6015 0 1 15670 8417 10047 10053 19212 19212 0.05930513029784379 KCFLKAKY 8 Unmodified _KCFLKAKY_ 0 0 0 L1MC4_dup18423|chr13:32413371-32413690:-|1.6852070886852806|0.1994467578095977|3.08|151.0|20|3|anti-sense L1MC4_dup18423|chr13:32413371-32413690:-|1.6852070886852806|0.1994467578095977|3.08|151.0|20|3|anti-sense L1MC4_dup18423|chr13:32413371-32413690:-|1.6852070886852806|0.1994467578095977|3.08|151.0|20|3|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7857666015625 2 500.786056 999.557558 NaN NaN NaN NaN NaN NaN NaN 27.586 1 31.149 30.649 31.649 3.5629 0 0 0 0.40746 1 3575 3575 0.69038 0 1 15671 11424 10048 10054 19213 19213 0.057761963017583184 KCFLPVNY 8 Unmodified _KCFLPVNY_ 0 0 0 L1ME1_dup479|chr1:43754947-43755516:+|1.6396373245804898|0.0170975787596764|6.58|151.0|27|1|anti-sense L1ME1_dup479|chr1:43754947-43755516:+|1.6396373245804898|0.0170975787596764|6.58|151.0|27|1|anti-sense L1ME1_dup479|chr1:43754947-43755516:+|1.6396373245804898|0.0170975787596764|6.58|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 492.254150390625 2 492.254588 982.494624 NaN NaN NaN NaN NaN NaN NaN 27.541 1 30.884 30.384 31.384 3.3422 0 0 0 0.40604 1 4195 4195 2.5775 0 1 15672 12409 10049 10055 19214 19214 0.002676305137356394 KCFRMVHPTF 10 Unmodified _KCFRMVHPTF_ 0 0 0 nc|ENSG00000148187|Q96E11-5|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-8|MRRF;ENSG00000148187|ENST00000344641|MRRF nc|ENSG00000148187|Q96E11-5|MRRF nc|ENSG00000148187|Q96E11-5|MRRF MSMS UPN46_class_I_Rep_3 1 633.31787109375 2 633.317728 1264.6209 NaN NaN NaN NaN NaN NaN NaN 59.391 1 59.391 58.891 59.891 0 0 0 0 0.53105 1 13126 13126 1.4819 0.28856 1 15673 3493 10050 10056 19215 19215 -0.0008218625264362345 KCHGSGGSQQW 11 Unmodified _KCHGSGGSQQW_ 0 0 0 ENSG00000178234|ENST00000430044|GALNT11 ENSG00000178234|ENST00000430044|GALNT11 ENSG00000178234|ENST00000430044|GALNT11 MSMS UPN47_class_I_Rep_3 4 587.7578735351562 2 587.756546 1173.49854 NaN NaN NaN NaN NaN NaN NaN 38.709 1 41.947 41.447 42.447 3.238 0 0 0 0.38417 1 7567 7567 1.0715 0.27783 1 15674 4820 10051 10057 19216 19216 -0.08126931730521392 KCHNHPKK 8 Unmodified _KCHNHPKK_ 0 0 0 REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|34|2|sense REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 496.26513671875 2 496.266353 990.518153 NaN NaN NaN NaN NaN NaN NaN 45.231 1 48.747 48.247 49.247 3.5162 0 0 0 0.40746 1 8701 8701 0.69038 0 1 + 15675 27799 10052 10058 19217 19217 0.02251489070908974 KCHQAQLM 8 Unmodified _KCHQAQLM_ 0 0 0 AluJr_dup44972|chrX:119625545-119625850:-|5.525898605858125|0.2813922751865024|4.3|151.0|20|3|anti-sense AluJr_dup44972|chrX:119625545-119625850:-|5.525898605858125|0.2813922751865024|4.3|151.0|20|3|anti-sense AluJr_dup44972|chrX:119625545-119625850:-|5.525898605858125|0.2813922751865024|4.3|151.0|20|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.7328796386719 2 479.733497 957.452441 NaN NaN NaN NaN NaN NaN NaN 67.594 1 71.046 70.546 71.546 3.4516 0 0 0 0.40625 1 15548 15548 2.3027 0.24298 1 15676 153 10053 10059 19218 19218 -0.02798668166292373 KCHRFLPM 8 Unmodified _KCHRFLPM_ 0 0 0 ENST00000377811.3_1_X:47004160-47004361:-|nuORF ENST00000377811.3_1_X:47004160-47004361:-|nuORF ENST00000377811.3_1_X:47004160-47004361:-|nuORF MSMS UPN48_class_I_Rep_1 5 516.267578125 2 516.267507 1030.52046 NaN NaN NaN NaN NaN NaN NaN 27.847 1 31.404 30.904 31.904 3.5571 0 0 0 0.40738 1 3647 3647 0.79363 0 1 15677 6465 10054 10060 19219 19219 0.006422014843565194 KCIPKIKLKK 10 Unmodified _KCIPKIKLKK_ 0 0 0 L1M6_dup969|chr3:18214214-18214939:+|1.6068969211686828|0.0001284221296633|13.61|146.0|3|1|sense L1M6_dup969|chr3:18214214-18214939:+|1.6068969211686828|0.0001284221296633|13.61|146.0|3|1|sense L1M6_dup969|chr3:18214214-18214939:+|1.6068969211686828|0.0001284221296633|13.61|146.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 600.3362426757812 2 599.907036 1197.79952 NaN NaN NaN NaN NaN NaN NaN 89.663 1 89.663 89.163 90.163 0 0 0 0 0.53105 1 21581 21581 0 0 1 15678 9226 10055 10061 19220 19220 0.20853226657868618 KCKGNKQR 8 Unmodified _KCKGNKQR_ 0 0 0 REV__L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|12|1|sense REV__L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 481.2725524902344 2 481.271635 960.528718 NaN NaN NaN NaN NaN NaN NaN 25.654 1 29.004 28.504 29.504 3.3497 0 0 0 0.40625 1 3639 3639 2.3027 0.24298 1 + 15679 28762 10056 10062 19221 19221 0.04687471725344494 KCKKNRPATA 10 Unmodified _KCKKNRPATA_ 0 0 0 HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|3|1|sense HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|3|1|sense HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 558.8181762695312 2 558.81895 1115.62335 NaN NaN NaN NaN NaN NaN NaN 90.194 1 94.042 93.542 94.542 3.847 0 0 0 0.53105 1 21413 21413 1.4819 0.28856 1 15680 8204 10057 10063 19222 19222 0.07015985476664355 KCKLKAKY 8 Unmodified _KCKLKAKY_ 0 0 0 L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|10|2|sense L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|10|2|sense L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 491.29736328125 2 491.29933 980.584108 NaN NaN NaN NaN NaN NaN NaN 41.653 1 45.333 44.833 45.833 3.6792 0 0 0 0.40625 1 8386 8386 2.3027 0 1 15681 12687 10058 10064 19223 19223 0.09303885193094175 KCKPCRKI 8 Unmodified _KCKPCRKI_ 0 0 0 REV__ENSG00000151692|ENST00000320892|RNF144A REV__ENSG00000151692|ENST00000320892|RNF144A MULTI-SECPEP UPN48_class_I_Rep_1 5 487.7908630371094 2 488.283157 974.551762 0.1809 8.8329E-05 0.21792 0.00010641 0.39882 0.00019473 488.2834700421718 75.83 0.05101 79.33 79.301 79.353 3.4996 5 3 2 0 0 0 0.72333 1 17985 17985 0.69038 0 1 22715 + 15682 19665 10059 10065 19224 19224 0.06346774518442544 KCKQAQAY 8 Unmodified _KCKQAQAY_ 0 0 0 REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|18|1|sense REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|18|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 470.2394714355469 2 470.23947 938.464386 0.1218 5.7273E-05 0.36286 0.00017063 0.48466 0.0002279 470.2395479136181 44.473 0.47204 48.11 47.852 48.324 3.6372 46 33 2 0 0 0 0.82752 1 8386 8386 2.3027 0.24298 1 86887 + 15683 23302 10060 10066 19225 19225 -0.007307281514727038 KCKRRIVK 8 Unmodified _KCKRRIVK_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MSMS UPN48_class_I_Rep_3 7 515.7379150390625 2 515.836946 1029.65934 NaN NaN NaN NaN NaN NaN NaN 20.242 1 23.864 23.364 24.364 3.6215 0 0 0 0.40746 1 1683 1683 0.69038 0 1 15684 4263 10061 10067 19226 19226 0.1456948744419151 KCKRTNII 8 Unmodified _KCKRTNII_ 0 0 0 L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|105|2|sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|105|2|sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|105|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 487.7908020019531 2 488.292037 974.56952 0.28444 0.00013889 0.61012 0.00029792 0.89457 0.00043681 488.2924574633638 75.072 0.15151 78.638 78.56 78.712 3.5659 24 16 2 0 0 0 0.72333 1 17605 17605 2.5775 0 1 112170 15685 13717 10062 10068 19227 19227 0.0812181304496562 KCKVCKISQA 10 Unmodified _KCKVCKISQA_ 0 0 0 LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|56|3|anti-sense LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|56|3|anti-sense LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_1 2 554.30615234375 2 554.304287 1106.59402 NaN NaN NaN NaN NaN NaN NaN 25.729 1 29.492 28.992 29.992 3.7624 0 0 0 0.53105 1 3576 3576 1.3295 0.5359 1 15686 15713 10063 10069 19228 19228 0.04498705136188619 KCKVVLIN 8 Unmodified _KCKVVLIN_ 0 0 0 REV__ENSG00000115998|ENST00000264434|C2orf42 REV__ENSG00000115998|ENST00000264434|C2orf42 MSMS UPN47_class_I_Rep_2 3 458.78802490234375 2 458.786056 915.557558 NaN NaN NaN NaN NaN NaN NaN 84.761 1 88.184 87.684 88.684 3.4232 0 0 0 0.40625 1 21126 21126 2.3027 1.5091 1 + 15687 18588 10064 10070 19229 19229 0.09640196301779724 KCLHSKTK 8 Unmodified _KCLHSKTK_ 0 0 0 L1M4c_dup515|chr3:31582593-31583340:-|1.2528378574574897|0.0203777411332179|5.94|151.0|8|1|sense L1M4c_dup515|chr3:31582593-31583340:-|1.2528378574574897|0.0203777411332179|5.94|151.0|8|1|sense L1M4c_dup515|chr3:31582593-31583340:-|1.2528378574574897|0.0203777411332179|5.94|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 472.7708740234375 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 118.82 1 118.82 118.32 119.32 0 0 0 0 0.40746 1 29507 29507 0.69038 0 1 15688 9070 10065 10071 19230 19230 0.053298376365887634 KCLRLCFF 8 Unmodified _KCLRLCFF_ 0 0 0 nc|ENSG00000080910|P36980-2|CFHR2;ENSG00000080910|ENST00000367415|CFHR2;ENSG00000244414|ENST00000320493|CFHR1 nc|ENSG00000080910|P36980-2|CFHR2 nc|ENSG00000080910|P36980-2|CFHR2 MULTI-MSMS UPN47_class_I_Rep_1 2 515.2714233398438 2 515.272258 1028.52996 0.25158 0.00012963 -0.151 -7.7804E-05 0.10058 5.1827E-05 515.2718582213233 64.027 0.41514 67.383 67.185 67.6 3.3557 43 33 2 0 0 0 0.82752 2 15171 15171;15212 5.7604 5.7604 1 81462 15689 1209 10066 10072 19231;19232 19231 0.016839697698742384 KCLRLCFF 8 Unmodified _KCLRLCFF_ 0 0 0 nc|ENSG00000080910|P36980-2|CFHR2;ENSG00000080910|ENST00000367415|CFHR2;ENSG00000244414|ENST00000320493|CFHR1 nc|ENSG00000080910|P36980-2|CFHR2 nc|ENSG00000080910|P36980-2|CFHR2 MULTI-MSMS UPN47_class_I_Rep_3 4 515.2723999023438 2 515.272258 1028.52996 0.26861 0.00013841 -0.19695 -0.00010149 0.071659 3.6924E-05 515.2718686141553 64.292 0.38352 67.466 67.345 67.728 3.1741 34 26 2 0 0 0 0.82752 1 15373 15373 5.7604 0 1 67304 15690 1209 10066 10072 19233 19233 0.016839697698742384 KCLRLCFF 8 Unmodified _KCLRLCFF_ 0 0 0 nc|ENSG00000080910|P36980-2|CFHR2;ENSG00000080910|ENST00000367415|CFHR2;ENSG00000244414|ENST00000320493|CFHR1 nc|ENSG00000080910|P36980-2|CFHR2 nc|ENSG00000080910|P36980-2|CFHR2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 515.272258 1028.52996 0.26861 0.00013841 -0.19695 -0.00010149 0.071659 3.6924E-05 515.2718686141553 64.292 0.38352 67.466 67.345 67.728 3.1741 0.04144 -1.5301E-05 NaN 5.7604 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 67304 15691 1209 10066 10072 0.016839697698742384 KCMSKKKKL 9 Unmodified _KCMSKKKKL_ 0 0 0 REV__Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|133|3|anti-sense REV__Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|133|3|anti-sense MSMS UPN48_class_I_Rep_2 6 547.7322387695312 2 547.332847 1092.65114 NaN NaN NaN NaN NaN NaN NaN 71.688 1 75.238 74.738 75.738 3.5505 0 0 0 0.39518 1 16743 16743 1.8442 0 1 + 15692 32507 10067 10073 19234 19234 0.10852172412569416 KCPFFLLIVK 10 Unmodified _KCPFFLLIVK_ 0 0 0 L1MEc_dup270|chr1:43845284-43846466:-|1.044685241142396|0.035906076589472|4.86|151.0|101|3|anti-sense L1MEc_dup270|chr1:43845284-43846466:-|1.044685241142396|0.035906076589472|4.86|151.0|101|3|anti-sense L1MEc_dup270|chr1:43845284-43846466:-|1.044685241142396|0.035906076589472|4.86|151.0|101|3|anti-sense MSMS UPN46_class_I_Rep_3 1 403.2468566894531 3 403.247234 1206.71987 NaN NaN NaN NaN NaN NaN NaN 101.36 1 101.36 100.86 101.86 0 0 0 0 0.53105 1 24728 24728 0.13989 0 1 15693 13087 10068 10074 19235 19235 0.12478159983902515 KCPLIGEWPC 10 Unmodified _KCPLIGEWPC_ 0 0 0 L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|94|3|sense L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|94|3|sense L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|94|3|sense MSMS UPN47_class_I_Rep_2 3 573.2758178710938 2 573.277738 1144.54092 NaN NaN NaN NaN NaN NaN NaN 17.604 1 20.991 20.491 21.491 3.387 0 0 0 0.53105 1 1344 1344 3.5965 0.31518 1 15694 12482 10069 10075 19236 19236 -0.025566726464830936 KCPPHSYS 8 Unmodified _KCPPHSYS_ 0 0 0 nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4 nc|ENSG00000116106|P54764-2|EPHA4 nc|ENSG00000116106|P54764-2|EPHA4 MULTI-MSMS UPN47_class_I_Rep_2 3 459.710693359375 2 459.710545 917.406537 0.13826 6.3559E-05 0.042172 1.9387E-05 0.18043 8.2946E-05 459.71062317639695 96.67 1.5357 100.15 99.681 101.22 3.4791 505 222 3 0 0 0 0.82752 1 23790 23790 7.9102 7.9102 1 9178400 15695 2160 10070 10076 19237 19237 -0.05546990076891234 KCQHFKQHR 9 Unmodified _KCQHFKQHR_ 0 0 0 chr20:60070043-60070597|143|12.54|0.38|5.05|+|0|LINC02910,LINC02910|1;nc|ENSG00000176659|Q8N268|LINC02910 chr20:60070043-60070597|143|12.54|0.38|5.05|+|0|LINC02910,LINC02910|1 chr20:60070043-60070597|143|12.54|0.38|5.05|+|0|LINC02910,LINC02910|1 MULTI-MSMS UPN48_class_I_Rep_2 6 606.8161010742188 2 606.314366 1210.61418 0.61059 0.00037021 -1.022 -0.00061967 -0.41143 -0.00024946 606.3136155007395 55.475 0.73784 59.031 58.807 59.545 3.5559 86 46 2 0 0 0 0.46434 1 11814 11814 4.3292 1.0479 1 166650 15696 603 10071 10077 19238 19238 0.01729636910977206 KCQHFKQHR 9 Unmodified _KCQHFKQHR_ 0 0 0 chr20:60070043-60070597|143|12.54|0.38|5.05|+|0|LINC02910,LINC02910|1;nc|ENSG00000176659|Q8N268|LINC02910 chr20:60070043-60070597|143|12.54|0.38|5.05|+|0|LINC02910,LINC02910|1 chr20:60070043-60070597|143|12.54|0.38|5.05|+|0|LINC02910,LINC02910|1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 606.314366 1210.61418 0.41497 0.0002516 -0.40085 -0.00024304 0.01412 8.561E-06 606.3140967691623 55.843 0.84578 59.02 58.742 59.588 3.1779 -0.050074 0.00018682 NaN 4.3292 71 57 2 NaN NaN NaN NaN 0 NaN NaN 0 87717 15697 603 10071 10077 0.01729636910977206 KCQKRQTQRQ 10 Unmodified _KCQKRQTQRQ_ 0 0 0 L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|12|1|sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|12|1|sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|12|1|sense MSMS UPN47_class_I_Rep_2 3 435.2398376464844 3 435.238572 1302.69389 NaN NaN NaN NaN NaN NaN NaN 22.563 1 26.008 25.508 26.508 3.4447 0 0 0 0.53105 1 2699 2699 0.77653 0.27058 1 15698 10659 10072 10078 19239 19239 0.05464658794335264 KCTAFLHLG 9 Unmodified _KCTAFLHLG_ 0 0 0 L1ME3_dup6471|chr12:64645738-64646396:-|2.245817687099516|0.0120681899801725|7.54|151.0|7|1|sense L1ME3_dup6471|chr12:64645738-64646396:-|2.245817687099516|0.0120681899801725|7.54|151.0|7|1|sense L1ME3_dup6471|chr12:64645738-64646396:-|2.245817687099516|0.0120681899801725|7.54|151.0|7|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 494.7951354980469 2 495.265487 988.516422 -0.13694 -6.7823E-05 1.5973 0.00079109 1.4604 0.00072327 495.26647171803813 36.189 0.58604 39.6 39.298 39.884 3.4114 57 44 2 0 0 0 0.12235 1 6846 6846 4.756 0 1 78389 15699 12599 10073 10079 19240 19240 0.021704352623146406 KCTHFKHTVL 10 Unmodified _KCTHFKHTVL_ 0 0 0 L1ME1_dup11152|chr6:15289999-15290173:-|1.2994123367100594|0.0017155628550074|9.56|151.0|9|2|anti-sense L1ME1_dup11152|chr6:15289999-15290173:-|1.2994123367100594|0.0017155628550074|9.56|151.0|9|2|anti-sense L1ME1_dup11152|chr6:15289999-15290173:-|1.2994123367100594|0.0017155628550074|9.56|151.0|9|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.2217102050781 3 405.221859 1212.64375 -0.010941 -4.4336E-06 -0.033789 -1.3692E-05 -0.044731 -1.8126E-05 405.22177481321046 54.084 0.88722 54.084 53.679 54.566 0 167 93 2 0 0 0 0.52787 1 11615 11615 8.4443 8.4443 1 555510 15700 12175 10074 10080 19241 19241 0.045931561364795925 KCTSEQRQAWE 11 Unmodified _KCTSEQRQAWE_ 0 0 0 ENST00000563480.6_2_15:66782707-66786755:-|nuORF;ENST00000565387.2_1_15:66782707-66784420:-|nuORF ENST00000563480.6_2_15:66782707-66786755:-|nuORF ENST00000563480.6_2_15:66782707-66786755:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 455.5443420410156 3 455.878709 1364.6143 0.14346 6.5399E-05 -0.24798 -0.00011305 -0.10452 -4.7648E-05 455.87849586667147 19.888 0.10536 23.426 23.373 23.478 3.5378 12 12 2 0 0 0 22.551 1 1588 1588 1.2148 0.65166 1 23877 15701 7473 10075 10081 19242 19242 -0.05342452670311104 KCTYTSWNTMQ 11 Unmodified _KCTYTSWNTMQ_ 0 0 0 L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|23|3|sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|23|3|sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 454.8671569824219 3 454.865412 1361.57441 NaN NaN NaN NaN NaN NaN NaN 113.1 1 116.73 116.23 117.23 3.6314 0 0 0 0.38417 1 27467 27467 0.40827 0 1 15702 13725 10076 10082 19243 19243 -0.09191715665247102 KCTYTSWNTMQ 11 Unmodified _KCTYTSWNTMQ_ 0 0 0 L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|23|3|sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|23|3|sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 454.8671875 3 454.865412 1361.57441 NaN NaN NaN NaN NaN NaN NaN 113.6 1 117.23 116.73 117.73 3.6314 0 0 0 0.38417 1 27599 27599 0.40827 0 1 15703 13725 10076 10082 19244 19244 -0.09191715665247102 KCVGVFSK 8 Unmodified _KCVGVFSK_ 0 0 0 MER31A_dup146|chr2:44214399-44214860:-|1.166186917948392|0.1150643980690685|3.34|151.0|21|1|anti-sense MER31A_dup146|chr2:44214399-44214860:-|1.166186917948392|0.1150643980690685|3.34|151.0|21|1|anti-sense MER31A_dup146|chr2:44214399-44214860:-|1.166186917948392|0.1150643980690685|3.34|151.0|21|1|anti-sense MSMS UPN46_class_I_Rep_3 1 434.2436218261719 2 434.241481 866.468409 NaN NaN NaN NaN NaN NaN NaN 75.709 1 75.709 75.209 76.209 0 0 0 0 0.40625 1 17619 17619 2.3027 0 1 15704 15913 10077 10083 19245 19245 0.029833613422511007 KCVIWRVLSK 10 Unmodified _KCVIWRVLSK_ 0 0 0 REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense MSMS UPN48_class_I_Rep_1 5 615.9140014648438 2 616.370818 1230.72708 NaN NaN NaN NaN NaN NaN NaN 82.332 1 85.908 85.408 86.408 3.5753 0 0 0 0.53105 1 19658 19658 1.4819 0 1 + 15705 24756 10078 10084 19246 19246 0.12094892584332229 KCVKHSPPG 9 Unmodified _KCVKHSPPG_ 0 0 0 nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1 nc|ENSG00000124006|O75147-2|OBSL1 nc|ENSG00000124006|O75147-2|OBSL1 MULTI-SECPEP UPN48_class_I_Rep_3 7 476.2539978027344 2 476.755287 951.496021 0.21841 0.00010413 0.3072 0.00014646 0.5256 0.00025058 476.75547060979454 94.453 0.37521 98.355 98.044 98.419 3.9016 71 52 2 0 0 0 0.12281 1 22388 22388 4.3292 4.3292 1 177640 15706 2441 10079 10085 19247 19247 0.018332646024987298 KCVMFPFLC 9 Unmodified _KCVMFPFLC_ 0 0 0 L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|309|3|anti-sense L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|309|3|anti-sense L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|309|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.3097534179688 2 544.260502 1086.50645 NaN NaN NaN NaN NaN NaN NaN 38.251 1 38.251 37.751 38.751 0 0 0 0 0.39428 1 7267 7267 2.0598 1.2661 1 15707 14540 10080 10086 19248 19248 -0.03334212058939556 KCYVLVEV 8 Unmodified _KCYVLVEV_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS UPN46_class_I_Rep_3 1 476.7633972167969 2 476.762246 951.50994 0.19384 9.2416E-05 -0.36673 -0.00017484 -0.17289 -8.2428E-05 476.76208780869433 64.385 0.19296 64.385 64.354 64.546 0 29 21 2 0 0 0 0.82752 1 14519 14519 4.3292 0 1 189580 15708 1436 10081 10087 19249 19249 0.0322449731091865 KCYVVLLN 8 Unmodified _KCYVVLLN_ 0 0 0 Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 476.2701721191406 2 476.270238 950.525924 0.089637 4.2692E-05 -0.26694 -0.00012714 -0.17731 -8.4446E-05 476.2700641446671 65.586 0.65889 68.941 68.604 69.263 3.3557 55 35 2 0 0 0 0.82752 1 15621 15621 4.756 0.81161 1 131770 15709 33259 10082 10088 19250 19250 0.04868203547835037 KCYVVLLN 8 Unmodified _KCYVVLLN_ 0 0 0 Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.2708740234375 2 476.270238 950.525924 0.056159 2.6747E-05 0.28403 0.00013528 0.34019 0.00016202 476.2703024911211 65.846 0.82065 69.104 68.805 69.626 3.2588 61 47 2 0 0 0 0.82752 2 15739 15739;15787 4.756 0.81161 1 101140 15710 33259 10082 10088 19251;19252 19251 0.04868203547835037 KCYVVLLN 8 Unmodified _KCYVVLLN_ 0 0 0 Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense Tigger17a_dup755|chr5:157834886-157835517:+|2.0889007255591685|0.0110860163989636|7.56|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 476.27044677734375 2 476.270238 950.525924 0.034927 1.6635E-05 0.16303 7.7645E-05 0.19795 9.428E-05 476.27028651458176 65.984 0.67813 69.169 68.767 69.445 3.1853 51 40 2 0 0 0 0.82752 1 15891 15891 4.756 0.81161 1 103190 15711 33259 10082 10088 19253 19253 0.04868203547835037 KDALHLLF 8 Unmodified _KDALHLLF_ 0 0 0 REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF MSMS UPN48_class_I_Rep_2 6 478.7816162109375 2 478.781828 955.549102 NaN NaN NaN NaN NaN NaN NaN 73.987 1 77.565 77.065 78.065 3.5779 0 0 0 0.388 1 17395 17395 12.532 0 1 + 15712 18206 10083 10089 19254 19254 0.0695496565680287 KDARRLKQY 9 Unmodified _KDARRLKQY_ 0 0 0 L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|3|1|sense L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|3|1|sense L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.342529296875 2 589.343646 1176.67274 0.53915 0.00031775 -1.1893 -0.00070088 -0.6501 -0.00038313 589.3427722091938 84.064 0.098267 87.476 87.418 87.516 3.4116 13 12 2 0 0 0 0.48643 1 20964 20964 2.0598 0 1 73155 15713 13244 10084 10090 19255 19255 0.09147016757128767 KDCCCECY 8 Unmodified _KDCCCECY_ 0 0 0 REV__L1PA3_dup2663|chr4:78795435-78796545:+|1.4145614025876845|0.132851492231915|3.41|151.0|62|3|anti-sense REV__L1PA3_dup2663|chr4:78795435-78796545:+|1.4145614025876845|0.132851492231915|3.41|151.0|62|3|anti-sense MSMS UPN46_class_I_Rep_3 1 483.6466979980469 2 483.644842 965.27513 NaN NaN NaN NaN NaN NaN NaN 52.423 1 52.423 51.923 52.923 0 0 0 0 0.40738 1 11210 11210 0.79363 0.79363 1 + 15714 29528 10085 10091 19256 19256 -0.20889627822975854 KDCDLPAA 8 Unmodified _KDCDLPAA_ 0 0 0 ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1 ENST00000369936.2_1_1:109730792-109745631:+|nuORF ENST00000369936.2_1_1:109730792-109745631:+|nuORF MSMS UPN46_class_I_Rep_3 1 416.697021484375 2 416.697103 831.379654 NaN NaN NaN NaN NaN NaN NaN 80.147 1 80.147 79.647 80.647 0 0 0 0 0.40738 1 18865 18865 0.79363 0 1 15715 2177 10086 10092 19257 19257 -0.04278098688098453 KDDIKHGNTF 10 Unmodified _KDDIKHGNTF_ 0 0 0 nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 nc|ENSG00000111224|Q9NR21-2|PARP11 MSMS UPN48_class_I_Rep_1 5 587.7996215820312 2 587.796195 1173.57784 NaN NaN NaN NaN NaN NaN NaN 45.741 1 49.257 48.757 49.757 3.5162 0 0 0 0.53105 1 8854 8854 2.4985 0.21571 1 15716 1962 10087 10093 19258 19258 -0.00200961504742736 KDDILLLI 8 Unmodified _KDDILLLI_ 0 0 0 Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7959899902344 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 116.93 1 120.53 120.03 121.03 3.6036 0 0 0 0.40753 1 28971 28971 0.6015 0 1 15717 15491 10088 10094 19259 19259 0.10660699251184269 KDDILLLI 8 Unmodified _KDDILLLI_ 0 0 0 Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79473876953125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 22.763 1 26.207 25.707 26.707 3.4447 0 0 0 0.40625 1 2754 2754 2.3027 0 1 15718 15491 10088 10094 19260 19260 0.10660699251184269 KDDILLLI 8 Unmodified _KDDILLLI_ 0 0 0 Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7953796386719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 29.94 1 33.432 32.932 33.932 3.4923 0 0 0 0.40753 1 4866 4866 0.6015 0 1 15719 15491 10088 10094 19261 19261 0.10660699251184269 KDDILLLI 8 Unmodified _KDDILLLI_ 0 0 0 Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7958679199219 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 27.252 1 30.594 30.094 31.094 3.3422 0 0 0 0.40738 1 4110 4110 0.79363 0 1 15720 15491 10088 10094 19262 19262 0.10660699251184269 KDDILLLI 8 Unmodified _KDDILLLI_ 0 0 0 Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense Looper_dup502|chr19:29953378-29954013:-|1.1344317086349678|0.0089508351828078|6.99|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 81.065 1 84.388 83.888 84.888 3.3231 0 0 0 0.40581 1 20282 20282 2.8892 0 1 15721 15491 10088 10094 19263 19263 0.10660699251184269 KDDKGKRKRK 10 Unmodified _KDDKGKRKRK_ 0 0 0 nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX nc|ENSG00000085224|P46100-2|ATRX nc|ENSG00000085224|P46100-2|ATRX MSMS UPN48_class_I_Rep_2 6 629.8887939453125 2 629.888752 1257.76295 NaN NaN NaN NaN NaN NaN NaN 28.121 1 31.752 31.252 32.252 3.6311 0 0 0 0.53105 1 3828 3828 0.35063 0 1 15722 1260 10089 10095 19264 19264 0.14438066085540413 KDDWSGHG 8 Unmodified _KDDWSGHG_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS UPN47_class_I_Rep_1 2 451.1928405761719 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 119.02 1 122.62 122.12 123.12 3.6036 0 0 0 0.40738 1 29558 29558 0.79363 0.10326 1 15723 4499 10090 10096 19265 19265 -0.08157695244278784 KDELPCVP 8 Unmodified _KDELPCVP_ 0 0 0 nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586 nc|ENSG00000100578|Q9BVV6-2|KIAA0586 nc|ENSG00000100578|Q9BVV6-2|KIAA0586 MSMS UPN48_class_I_Rep_1 5 450.8839111328125 2 450.728403 899.442254 NaN NaN NaN NaN NaN NaN NaN 94.441 1 98.062 97.562 98.562 3.6208 0 0 0 0.40738 1 22727 22727 0.79363 0 1 15724 1516 10091 10097 19266 19266 -0.011489526198943167 KDFYCRCS 8 Unmodified _KDFYCRCS_ 0 0 0 L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|54|1|anti-sense L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|54|1|anti-sense L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_1 5 511.21453857421875 2 511.215137 1020.41572 NaN NaN NaN NaN NaN NaN NaN 105.96 1 109.59 109.09 110.09 3.6277 0 0 0 0.40625 1 25533 25533 2.3027 0 1 15725 9922 10092 10098 19267 19267 -0.0936696478287331 KDHIVTKQ 8 Unmodified _KDHIVTKQ_ 0 0 0 REV__L1MEc_dup982|chr1:148422177-148422596:-|1.9325883085553408|0.0944180802029591|4.36|151.0|12|2|sense REV__L1MEc_dup982|chr1:148422177-148422596:-|1.9325883085553408|0.0944180802029591|4.36|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 484.77923583984375 2 484.779816 967.545079 NaN NaN NaN NaN NaN NaN NaN 36.495 1 40.197 39.697 40.697 3.7021 0 0 0 0.40659 1 6139 6139 1.8442 0 1 + 15726 28502 10093 10099 19268 19268 0.06000876163079738 KDHMRKKQHRK 11 Unmodified _KDHMRKKQHRK_ 0 0 0 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 MSMS UPN48_class_I_Rep_3 7 497.95098876953125 3 497.952766 1490.83647 NaN NaN NaN NaN NaN NaN NaN 21.86 1 25.574 25.074 26.074 3.7144 0 0 0 0.38417 1 2133 2133 0.50596 0 1 15727 5472 10094 10100 19269 19269 0.11068291256356133 KDIKEFFKI 9 Unmodified _KDIKEFFKI_ 0 0 0 REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 584.3423461914062 2 584.342249 1166.66995 0.58019 0.00033903 0.011178 6.5315E-06 0.59137 0.00034556 584.3421297955294 57.749 0.87494 61.264 60.886 61.761 3.5142 144 61 3 0 0 0 0.23293 2 12481 12481;12605 18.146 0 1 716110 + 15728 24416 10095 10101 19270;19271 19270 0.09327748579607942 KDIKEFFKI 9 Unmodified _KDIKEFFKI_ 0 0 0 REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.342529296875 2 584.342249 1166.66995 0.42204 0.00024662 0.13677 7.9922E-05 0.55881 0.00032654 584.3422422140058 57.461 0.38224 60.992 60.698 61.08 3.5317 76 36 3 0 0 0 0.16559 2 12349 12309;12349 24.021 0 1 622270 + 15729 24416 10095 10101 19272;19273 19273 0.09327748579607942 KDIKEFFKI 9 Unmodified _KDIKEFFKI_ 0 0 0 REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.3418579101562 2 584.342249 1166.66995 0.42795 0.00025007 0.021808 1.2744E-05 0.44976 0.00026281 584.3421775509621 57.629 0.60432 61.161 61.055 61.659 3.5317 94 41 3 0 0 0 0.066633 1 12471 12471 41.84 0 1 652030 + 15730 24416 10095 10101 19274 19274 0.09327748579607942 KDIKEFFKI 9 Unmodified _KDIKEFFKI_ 0 0 0 REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 584.798583984375 2 584.342249 1166.66995 0.42204 0.00024662 0.13677 7.9922E-05 0.55881 0.00032654 584.3422422140058 57.461 0.38224 60.992 60.698 61.08 3.5317 76 36 3 0 0 0 0.10927 1 12313 12313 16.149 0 1 622270 + 15731 24416 10095 10101 19275 19275 0.09327748579607942 KDIKEFFKI 9 Unmodified _KDIKEFFKI_ 0 0 0 REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense REV__L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 584.342249 1166.66995 0.51005 0.00029804 -0.60672 -0.00035453 -0.096665 -5.6485E-05 584.3419818288025 57.421 0.042961 60.915 60.886 60.929 3.4942 -0.038789 -0.00081905 NaN 24.021 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 60276 + 15732 24416 10095 10101 0.09327748579607942 KDIKKKFFN 9 Unmodified _KDIKKKFFN_ 0 0 0 Tigger3b_dup3005|chr7:128960057-128960749:+|1.1073663556109397|0.306551699263965|1.85|150.0|26|3|sense Tigger3b_dup3005|chr7:128960057-128960749:+|1.1073663556109397|0.306551699263965|1.85|150.0|26|3|sense Tigger3b_dup3005|chr7:128960057-128960749:+|1.1073663556109397|0.306551699263965|1.85|150.0|26|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3480224609375 2 584.347866 1166.68118 0.26339 0.00015391 0.38057 0.00022238 0.64396 0.0003763 584.3478353739092 29.889 0.17331 29.889 29.801 29.974 0 24 16 3 0 0 0 0.50088 1 4780 4780 0.52476 0.066424 1 297100 15733 33380 10096 10102 19276 19276 0.10450570673765469 KDIQRSWLEEY 11 Unmodified _KDIQRSWLEEY_ 0 0 0 L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|34|2|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|34|2|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|34|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 490.276611328125 3 489.580658 1465.72014 0.23929 0.00011715 3.2341 0.0015834 3.4734 0.0017005 489.58211784580163 67.981 0.24109 67.981 67.84 68.081 0 29 23 2 0 0 0 22.551 1 15488 15488 2.2527 1.4762 1 293970 15734 9872 10097 10103 19277 19277 0.005912064468475364 KDIVHSGLA 9 Unmodified _KDIVHSGLA_ 0 0 0 nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000148672|ENST00000277865|GLUD1 nc|ENSG00000148672|P00367-2|GLUD1 nc|ENSG00000148672|P00367-2|GLUD1 MSMS UPN47_class_I_Rep_3 4 470.2549133300781 2 470.266542 938.51853 NaN NaN NaN NaN NaN NaN NaN 24.871 1 28.222 27.722 28.722 3.3509 0 0 0 0.39518 1 3406 3406 1.8442 0 1 15735 3518 10098 10104 19278 19278 0.046811872717512415 KDKGHFIM 8 Unmodified _KDKGHFIM_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|118|3|sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|118|3|sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|118|3|sense MSMS UPN48_class_I_Rep_2 6 488.2431640625 2 488.257662 974.500772 NaN NaN NaN NaN NaN NaN NaN 70.93 1 74.465 73.965 74.965 3.5359 0 0 0 0.40738 1 16520 16520 0.79363 0 1 15736 11263 10099 10105 19279 19279 0.012501487452482252 KDKHKLKVKE 10 Unmodified _KDKHKLKVKE_ 0 0 0 L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|60|2|sense L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|60|2|sense L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|60|2|sense MSMS UPN47_class_I_Rep_2 3 626.8900146484375 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.13 1 108.67 108.17 109.17 3.5327 0 0 0 0.53105 1 25513 25513 5.7319 0.83484 1 15737 9977 10100 10106 19280 19280 0.1504931613953886 KDKKPHEYL 9 Unmodified _KDKKPHEYL_ 0 0 0 L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|9|1|sense L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|9|1|sense L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.3190307617188 2 579.319306 1156.62406 0.42899 0.00024852 -0.41795 -0.00024212 0.011043 6.3974E-06 579.319156835125 40.343 0.71416 43.848 43.593 44.307 3.5048 97 64 2 0 0 0 0.49026 1 7165 7165 1.6526 1.6526 1 126440 15738 13663 10101 10107 19281 19281 0.05201103397371298 KDKKTHLE 8 Unmodified _KDKKTHLE_ 0 0 0 REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|26|2|sense REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|26|2|sense MSMS UPN47_class_I_Rep_1 2 499.7835998535156 2 499.785099 997.555644 NaN NaN NaN NaN NaN NaN NaN 118.53 1 122.13 121.63 122.63 3.6036 0 0 0 0.40746 1 29416 29416 0.69038 0.088878 1 + 15739 27571 10102 10108 19282 19282 0.05676858817514585 KDKRYYLA 8 Unmodified _KDKRYYLA_ 0 0 0 REV__ENSG00000196338.13,NLGN3,chrX,+,I4.1,71153537,71155213|47|6.5|3|intron REV__ENSG00000196338.13,NLGN3,chrX,+,I4.1,71153537,71155213|47|6.5|3|intron MSMS UPN48_class_I_Rep_1 5 528.7944946289062 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 31.332 1 34.866 34.366 35.366 3.5342 0 0 0 0.40404 1 4623 4623 5.2307 1.2863 1 + 15740 21029 10103 10109 19283 19283 0.0508144919717779 KDKWKKKKK 9 Unmodified _KDKWKKKKK_ 0 0 0 REV__L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|26|2|sense REV__L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|26|2|sense MSMS UPN47_class_I_Rep_3 4 406.2666931152344 3 406.267797 1215.78156 NaN NaN NaN NaN NaN NaN NaN 35.041 1 38.305 37.805 38.805 3.2639 0 0 0 0.40177 1 6442 6442 0.26902 0 1 + 15741 27089 10104 10110 19284 19284 0.18230227727394777 KDLHRHWPL 9 Unmodified _KDLHRHWPL_ 0 0 0 LTR5A_dup216|chr11:71899369-71900382:+|1.495820273039138|0.0942871651122803|3.99|151.0|47|2|anti-sense LTR5A_dup216|chr11:71899369-71900382:+|1.495820273039138|0.0942871651122803|3.99|151.0|47|2|anti-sense LTR5A_dup216|chr11:71899369-71900382:+|1.495820273039138|0.0942871651122803|3.99|151.0|47|2|anti-sense MSMS UPN46_class_I_Rep_3 1 601.6583251953125 2 601.333082 1200.65161 NaN NaN NaN NaN NaN NaN NaN 32.519 1 32.519 32.019 33.019 0 0 0 0 0.40038 1 5574 5574 0.6015 0 1 15742 15684 10105 10111 19285 19285 0.05931051448260405 KDLHTENNKV 10 Unmodified _KDLHTENNKV_ 0 0 0 L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|1|1|sense L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|1|1|sense L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 599.3139038085938 2 599.314751 1196.61495 NaN NaN NaN NaN NaN NaN NaN 69.17 1 72.625 72.125 73.125 3.4548 0 0 0 0.53105 1 16026 16026 8.1555 1.4324 1 15743 9316 10106 10112 19286 19286 0.02450710041034654 KDLKNLEIS 9 Unmodified _KDLKNLEIS_ 0 0 0 MER102a_dup509|chr3:71089918-71090150:-|1.2623599977953783|0.0167570067961377|6.24|151.0|5|2|sense MER102a_dup509|chr3:71089918-71090150:-|1.2623599977953783|0.0167570067961377|6.24|151.0|5|2|sense MER102a_dup509|chr3:71089918-71090150:-|1.2623599977953783|0.0167570067961377|6.24|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.3065795898438 2 530.305864 1058.59717 0.39294 0.00020838 -0.90573 -0.00048032 -0.5128 -0.00027194 530.305024612925 29.182 0.5306 32.732 32.49 33.021 3.5499 89 55 2 0 0 0 0.49187 1 4100 4100 1.4819 0 1 138040 15744 15755 10107 10113 19287 19287 0.07021994786168761 KDLKVNLSA 9 Unmodified _KDLKVNLSA_ 0 0 0 nc|ENSG00000104055|O43548-2|TGM5;ENSG00000104055|ENST00000220420|TGM5 nc|ENSG00000104055|O43548-2|TGM5 nc|ENSG00000104055|O43548-2|TGM5 MULTI-MSMS UPN47_class_I_Rep_3 4 494.29571533203125 2 494.295299 986.576045 0.1549 7.6566E-05 0.22767 0.00011254 0.38257 0.0001891 494.29542912589426 61.323 0.30143 64.488 64.295 64.596 3.1651 26 23 2 0 0 0 0.49187 1 14464 14464 1.4819 0 1 66963 15745 1675 10108 10114 19288 19288 0.08222029477326487 KDLRPSAL 8 Unmodified _KDLRPSAL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|4|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|9|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|8|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|3|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN48_class_I_Rep_2 6 450.2691955566406 2 450.269084 898.523616 NaN NaN NaN NaN NaN NaN NaN 50.775 1 54.443 53.943 54.943 3.6679 0 0 0 0.40292 1 10399 10399 6.7232 0 1 15746 5298 10109 10115 19289 19289 0.07029491134358068 KDMQEYFDF 9 Unmodified _KDMQEYFDF_ 0 0 0 REV__ENSG00000163161|ENST00000285398|ERCC3 REV__ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS UPN48_class_I_Rep_1 5 611.7581176757812 2 611.757889 1221.50123 0.57912 0.00035428 -0.33042 -0.00020213 0.24871 0.00015215 611.7575960941122 61.709 0.70122 65.177 64.831 65.533 3.4678 97 64 2 0 0 0 0.052902 2 13781 13693;13781 47.749 7.799 1 570940 + 15747 19968 10110 10116 19290;19291 19291 -0.10066521116232252 KDMQEYFDF 9 Unmodified _KDMQEYFDF_ 0 0 0 REV__ENSG00000163161|ENST00000285398|ERCC3 REV__ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS UPN48_class_I_Rep_2 6 611.758056640625 2 611.757889 1221.50123 0.54652 0.00033434 -0.03546 -2.1693E-05 0.51106 0.00031264 611.757672205039 61.606 0.83041 65.08 64.721 65.552 3.4738 171 67 3 0 0 0 0.17897 3 13715 13634;13673;13715 22.736 2.3217 1 586020 + 15748 19968 10110 10116 19292;19293;19294 19294 -0.10066521116232252 KDMQEYFDF 9 Unmodified _KDMQEYFDF_ 0 0 0 REV__ENSG00000163161|ENST00000285398|ERCC3 REV__ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS UPN48_class_I_Rep_3 7 611.7579345703125 2 611.757889 1221.50123 0.5677 0.00034729 -0.29449 -0.00018016 0.2732 0.00016713 611.757629919763 61.525 0.94698 65.037 64.593 65.54 3.5128 160 80 3 0 0 0 0.090251 3 13605 13514;13551;13605 36.127 3.3413 1 650530 + 15749 19968 10110 10116 19295;19296;19297 19297 -0.10066521116232252 KDNKRHWGY 9 Unmodified _KDNKRHWGY_ 0 0 0 L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|37|2|sense L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|37|2|sense L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|37|2|sense MSMS UPN48_class_I_Rep_2 6 602.3047485351562 2 602.304521 1202.59449 NaN NaN NaN NaN NaN NaN NaN 33.455 1 37.116 36.616 37.616 3.6607 0 0 0 0.40038 1 5281 5281 0.6015 0 1 15750 14060 10111 10117 19298 19298 0.0012958417189565807 KDNKYLSVK 9 Unmodified _KDNKYLSVK_ 0 0 0 REV__CON__Q3Y5Z3 REV__CON__Q3Y5Z3 MULTI-MSMS UPN47_class_I_Rep_1 2 547.8161010742188 2 547.813856 1093.61316 0.19276 0.00010559 0.57625 0.00031568 0.769 0.00042127 547.8142962675453 46.971 0.65466 50.666 50.36 51.014 3.6951 51 42 2 0 0 0 0.279 3 9982 9982;9998;10042 15.248 4.449 1 105810 + + 15751 17499 10112 10118 19299;19300;19301 19299 0.07009701023071102 KDNKYLSVK 9 Unmodified _KDNKYLSVK_ 0 0 0 REV__CON__Q3Y5Z3 REV__CON__Q3Y5Z3 MULTI-MSMS UPN47_class_I_Rep_2 3 547.8134155273438 2 547.813856 1093.61316 0.29189 0.0001599 0.3301 0.00018083 0.62199 0.00034074 547.8141368409164 47.39 0.44927 50.74 50.447 50.896 3.3492 38 27 2 0 0 0 0.279 2 10153 10132;10153 15.248 4.0851 1 104360 + + 15752 17499 10112 10118 19302;19303 19303 0.07009701023071102 KDNKYLSVK 9 Unmodified _KDNKYLSVK_ 0 0 0 REV__CON__Q3Y5Z3 REV__CON__Q3Y5Z3 MULTI-MSMS UPN47_class_I_Rep_3 4 547.8145141601562 2 547.813856 1093.61316 0.34108 0.00018685 0.84321 0.00046192 1.1843 0.00064877 547.814268792219 47.585 0.38068 50.826 50.48 50.86 3.2405 37 26 2 0 0 0 0.279 1 10261 10261 15.248 4.449 1 202580 + + 15753 17499 10112 10118 19304 19304 0.07009701023071102 KDNLSYIEH 9 Unmodified _KDNLSYIEH_ 0 0 0 ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 ENSG00000162734|ENST00000360472|PEA15 ENSG00000162734|ENST00000360472|PEA15 MULTI-MSMS UPN47_class_I_Rep_3 4 561.7611694335938 2 559.77747 1117.54039 0.22462 0.00012574 -0.087143 -4.8781E-05 0.13747 7.6955E-05 559.7773358800715 45.053 1.6121 48.297 47.814 49.426 3.2441 250 99 4 0 0 0 0.48643 1 9536 9536 2.0598 0 1 1214400 15754 3954 10113 10119 19305 19305 -0.013680527703627376 KDQQRFKQKVK 11 Unmodified _KDQQRFKQKVK_ 0 0 0 PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|65|1|anti-sense PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|65|1|anti-sense PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.2843017578125 3 478.284287 1431.83103 -0.38599 -0.00018461 -0.37661 -0.00018013 -0.7626 -0.00036474 478.28427254074893 13.395 0.44394 16.852 16.75 17.194 3.457 110 52 3 0 0 0 0.68478 1 340 340 0.094841 0 1 71957 15755 16883 10114 10120 19306 19306 0.1323889094551305 KDQQWPAVTA 10 Unmodified _KDQQWPAVTA_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_2 3 572.2927856445312 2 572.293288 1142.57202 0.045692 2.6149E-05 -0.13315 -7.62E-05 -0.087456 -5.005E-05 572.2931793302678 35.441 0.87403 38.852 38.532 39.406 3.4114 85 55 2 0 0 0 0.56078 1 6465 6465 3.2813 1.4371 1 135880 + 15756 18199 10115 10121 19307 19307 0.006439399836153825 KDRCRLMK 8 Unmodified _KDRCRLMK_ 0 0 0 ENST00000582887.1_1_7:86811523-86815316:+|nuORF;ENST00000425406.5_1_7:86811523-86817410:+|nuORF;ENST00000447863.5_1_7:86811523-86824453:+|nuORF;nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1 ENST00000582887.1_1_7:86811523-86815316:+|nuORF ENST00000582887.1_1_7:86811523-86815316:+|nuORF MSMS UPN48_class_I_Rep_3 7 525.2877807617188 2 525.288971 1048.56339 NaN NaN NaN NaN NaN NaN NaN 54.196 1 57.766 57.266 58.266 3.5694 0 0 0 0.40643 1 11370 11370 2.0598 0.21551 1 15757 2887 10116 10122 19308 19308 0.04104971541778468 KDRHKKRKW 9 Unmodified _KDRHKKRKW_ 0 0 0 REV__LTR5_Hs_dup487|chr15:65733653-65734621:+|2.215119202850881|0.0567924633901417|5.29|151.0|43|2|anti-sense REV__LTR5_Hs_dup487|chr15:65733653-65734621:+|2.215119202850881|0.0567924633901417|5.29|151.0|43|2|anti-sense MSMS UPN46_class_I_Rep_3 1 641.385498046875 2 641.38618 1280.75781 NaN NaN NaN NaN NaN NaN NaN 98.54 1 98.54 98.04 99.04 0 0 0 0 0.4007 1 23991 23991 0.52476 0.066424 1 + 15758 30959 10117 10123 19309 19309 0.12865807013577069 KDRNLGFKISL 11 Unmodified _KDRNLGFKISL_ 0 0 0 ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2 ENSG00000092969|ENST00000366930|TGFB2 ENSG00000092969|ENST00000366930|TGFB2 MSMS UPN48_class_I_Rep_3 7 645.8792724609375 2 645.880062 1289.74557 NaN NaN NaN NaN NaN NaN NaN 61.722 1 65.232 64.732 65.732 3.5104 0 0 0 0.38417 1 13663 13663 2.4985 1.0166 1 15759 1398 10118 10124 19310 19310 0.1122872575990641 KDRPRRWRL 9 Unmodified _KDRPRRWRL_ 0 0 0 REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 641.8828125 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 90.113 1 90.113 89.613 90.613 0 0 0 0 0.4007 1 21717 21717 0.52476 0 1 + 15760 31695 10119 10125 19311 19311 0.12344922870829578 KDRPRRWRL 9 Unmodified _KDRPRRWRL_ 0 0 0 REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 641.88232421875 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 90.599 1 90.599 90.099 91.099 0 0 0 0 0.4007 1 21852 21852 0.52476 0 1 + 15761 31695 10119 10125 19312 19312 0.12344922870829578 KDRPRRWRL 9 Unmodified _KDRPRRWRL_ 0 0 0 REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 641.8827514648438 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 90.73 1 90.73 90.23 91.23 0 0 0 0 0.4007 1 21884 21884 0.52476 0 1 + 15762 31695 10119 10125 19313 19313 0.12344922870829578 KDRPRRWRL 9 Unmodified _KDRPRRWRL_ 0 0 0 REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 641.8829956054688 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 90.959 1 90.959 90.459 91.459 0 0 0 0 0.4007 1 21948 21948 0.52476 0 1 + 15763 31695 10119 10125 19314 19314 0.12344922870829578 KDRPRRWRL 9 Unmodified _KDRPRRWRL_ 0 0 0 REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense REV__MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 641.8836059570312 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 86.071 1 89.687 89.187 90.187 3.6153 0 0 0 0.4007 1 21495 21495 0.52476 0 1 + 15764 31695 10119 10125 19315 19315 0.12344922870829578 KDSKPLDA 8 Unmodified _KDSKPLDA_ 0 0 0 REV__nc|ENSG00000284762|O95263-3|PDE8B REV__nc|ENSG00000284762|O95263-3|PDE8B MSMS UPN47_class_I_Rep_1 2 437.23675537109375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 78.57 1 82.016 81.516 82.516 3.4456 0 0 0 0.40625 1 19539 19539 2.3027 0 1 + 15765 18498 10120 10126 19316 19316 0.019015056264606756 KDSPYIGSIK 10 Unmodified _KDSPYIGSIK_ 0 0 0 REV__L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|15|2|sense REV__L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.8072509765625 2 554.305864 1106.59717 -0.0092169 -5.109E-06 -0.56132 -0.00031114 -0.57054 -0.00031625 554.3055251676403 38.322 0.64388 41.987 41.78 42.424 3.6652 91 47 3 0 0 0 0.53794 1 7338 7338 7.1017 0.89594 1 90827 + 15766 30259 10121 10127 19317 19317 0.048139947861727705 KDSSSQLTHLL 11 Unmodified _KDSSSQLTHLL_ 0 0 0 REV__nc|ENSG00000273540|Q96MI9|AGBL1 REV__nc|ENSG00000273540|Q96MI9|AGBL1 MULTI-MSMS UPN47_class_I_Rep_1 2 614.8308715820312 2 614.830234 1227.64592 0.38759 0.0002383 -0.073539 -4.5214E-05 0.31405 0.00019309 614.8301013563266 66.039 0.70915 69.397 69.119 69.828 3.3576 77 47 2 0 0 0 0.52578 1 15746 15746 7.1017 0.47135 1 277480 + 15767 21423 10122 10128 19318 19318 0.04119863355299458 KDVSILLGF 9 Unmodified _KDVSILLGF_ 0 0 0 L1MB7_dup5121|chr3:195434535-195435183:-|3.775451631046588|0.0111984860758206|8.4|151.0|46|3|anti-sense L1MB7_dup5121|chr3:195434535-195435183:-|3.775451631046588|0.0111984860758206|8.4|151.0|46|3|anti-sense L1MB7_dup5121|chr3:195434535-195435183:-|3.775451631046588|0.0111984860758206|8.4|151.0|46|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2767333984375 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 73.476 1 73.476 72.976 73.976 0 0 0 0 0.3264 1 17032 17032 9.3474 0 1 15768 10846 10123 10129 19319 19319 0.07931815108440787 KDVYSENYK 9 Unmodified _KDVYSENYK_ 0 0 0 L1MA3_dup7753|chr15:56119807-56120729:-|1.150009474229838|0.0158482754638384|6.18|151.0|6|1|sense L1MA3_dup7753|chr15:56119807-56120729:-|1.150009474229838|0.0158482754638384|6.18|151.0|6|1|sense L1MA3_dup7753|chr15:56119807-56120729:-|1.150009474229838|0.0158482754638384|6.18|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.2762451171875 2 573.277303 1144.54005 -0.12877 -7.3818E-05 0.16769 9.6133E-05 0.038926 2.2315E-05 573.2773581638181 17.418 1.1676 20.969 20.627 21.795 3.5504 270 141 3 0 0 0 0.49187 1 1462 1462 1.4819 0.15237 1 69158 15769 9627 10124 10130 19320 19320 -0.026434724901946538 KDWLFLSI 8 Unmodified _KDWLFLSI_ 0 0 0 REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|38|1|anti-sense REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|38|1|anti-sense MSMS UPN47_class_I_Rep_3 4 511.287353515625 2 511.289485 1020.56442 NaN NaN NaN NaN NaN NaN NaN 50.761 1 53.977 53.477 54.477 3.2163 0 0 0 0.40625 1 11242 11242 2.3027 0 1 + 15770 27315 10125 10131 19321 19321 0.054958324539938985 KDYHQRGLS 9 Unmodified _KDYHQRGLS_ 0 0 0 REV__L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|74|3|sense REV__L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|74|3|sense MSMS UPN47_class_I_Rep_2 3 552.7457275390625 2 552.283254 1102.55196 NaN NaN NaN NaN NaN NaN NaN 50.476 1 53.82 53.32 54.32 3.3431 0 0 0 0.3967 1 11098 11098 1.4819 0.28856 1 + 15771 26974 10126 10132 19322 19322 0.004781890436561298 KDYKELYE 8 Unmodified _KDYKELYE_ 0 0 0 L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|55|3|sense L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|55|3|sense L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|55|3|sense MSMS UPN47_class_I_Rep_3 4 544.2682495117188 2 544.268947 1086.52334 NaN NaN NaN NaN NaN NaN NaN 31.418 1 34.717 34.217 35.217 3.2991 0 0 0 0.40604 1 5351 5351 2.5775 0 1 15772 8866 10127 10133 19323 19323 -0.016459733761621465 KDYKRVLR 8 Unmodified _KDYKRVLR_ 0 0 0 L1M3_dup2114|chr5:177322918-177323608:+|1.164299673152568|0.3082006788095936|1.92|151.0|3|1|sense L1M3_dup2114|chr5:177322918-177323608:+|1.164299673152568|0.3082006788095936|1.92|151.0|3|1|sense L1M3_dup2114|chr5:177322918-177323608:+|1.164299673152568|0.3082006788095936|1.92|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 538.8273315429688 2 539.330008 1076.64546 0.11916 6.4265E-05 -3.0344 -0.0016365 -2.9152 -0.0015723 539.3284064723124 44.155 0.13612 47.511 47.445 47.581 3.3556 10 7 2 0 0 0 0.72333 1 9169 9169 5.2307 0 1 56160 15773 8753 10128 10134 19324 19324 0.11020533216742479 KDYQCYGR 8 Unmodified _KDYQCYGR_ 0 0 0 Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|21|1|sense Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|21|1|sense Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|21|1|sense MSMS UPN48_class_I_Rep_1 5 516.732177734375 2 516.732009 1031.44946 NaN NaN NaN NaN NaN NaN NaN 93.633 1 97.254 96.754 97.754 3.6208 0 0 0 0.40604 1 22508 22508 2.5775 0 1 15774 33317 10129 10135 19325 19325 -0.06500220019461267 KDYQEYCEQL 10 Unmodified _KDYQEYCEQL_ 0 0 0 L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|74|3|sense L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|74|3|sense L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|74|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 440.7994079589844 3 440.192182 1317.55472 0.064632 2.8451E-05 -2.5958 -0.0011426 -2.5312 -0.0011142 440.52553848561814 43.875 0.14336 47.514 47.414 47.558 3.6385 10 8 2 0 0 0 0.84575 1 8207 8207 1.7423 1.0446 1 35236 15775 11154 10130 10136 19326 19326 -0.09135768404371447 KDYQEYCEQL 10 Unmodified _KDYQEYCEQL_ 0 0 0 L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|74|3|sense L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|74|3|sense L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|74|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 440.192182 1317.55472 0.043795 1.9278E-05 -2.5755 -0.0011337 -2.5317 -0.0011144 440.19075357513077 44.085 0.054916 47.847 47.798 47.853 3.7617 0.16644 1.637E-05 NaN 1.7423 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 56456 15776 11154 10130 10136 -0.09135768404371447 KDYSKIVRG 9 Unmodified _KDYSKIVRG_ 0 0 0 L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|35|3|sense L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|35|3|sense L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|35|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 533.2479858398438 2 533.306198 1064.59784 -0.071124 -3.7931E-05 0.46078 0.00024574 0.38966 0.00020781 533.306355108458 41.709 0.21244 45.074 44.948 45.161 3.3655 24 14 2 0 0 0 0.12099 1 8431 8431 3.5965 0 1 87403 15777 12517 10131 10137 19327 19327 0.06812834225888764 KEAETRAEF 9 Unmodified _KEAETRAEF_ 0 0 0 ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;CON__Q3SX28;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000143549|P06753-6|TPM3;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENSG00000143549|ENST00000651641|TPM3 ENST00000559108.1_1_15:63354467-63358183:+|nuORF ENST00000559108.1_1_15:63354467-63358183:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 540.7691040039062 2 540.769645 1079.52474 -0.38782 -0.00020972 -0.17394 -9.4064E-05 -0.56176 -0.00030378 540.7693725310086 17.903 0.50768 21.261 20.925 21.433 3.3581 78 58 2 0 0 0 0.41587 1 1389 1389 7.1017 2.2047 1 55396 + 15778 652 10132 10138 19328 19328 -0.011843392873743142 KEAETRAEF 9 Unmodified _KEAETRAEF_ 0 0 0 ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;CON__Q3SX28;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-4|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000143549|P06753-6|TPM3;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENSG00000143549|ENST00000651641|TPM3 ENST00000559108.1_1_15:63354467-63358183:+|nuORF ENST00000559108.1_1_15:63354467-63358183:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 540.769645 1079.52474 -0.088307 -4.7754E-05 -0.59758 -0.00032315 -0.68588 -0.00037091 540.7691865703417 17.395 0.87195 20.945 20.535 21.407 3.5504 -0.19308 -5.0028E-05 NaN 7.1017 196 105 2 NaN NaN NaN NaN 0 NaN NaN 0 79199 + 15779 652 10132 10138 -0.011843392873743142 KEANRALLN 9 Unmodified _KEANRALLN_ 0 0 0 nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL nc|ENSG00000124232|Q9UBG7-2|RBPJL nc|ENSG00000124232|Q9UBG7-2|RBPJL MSMS UPN46_class_I_Rep_3 1 514.8141479492188 2 514.795998 1027.57744 NaN NaN NaN NaN NaN NaN NaN 12.919 1 12.919 12.419 13.419 0 0 0 0 0.37476 1 245 245 6.7232 0.51738 1 15780 2456 10133 10139 19329 19329 0.06475663566084222 KEAQILYSA 9 Unmodified _KEAQILYSA_ 0 0 0 REV__nc|ENSG00000109689|Q9P246-2|STIM2 REV__nc|ENSG00000109689|Q9P246-2|STIM2 MSMS UPN48_class_I_Rep_3 7 511.77862548828125 2 511.779482 1021.54441 NaN NaN NaN NaN NaN NaN NaN 32.446 1 36.135 35.635 36.635 3.6896 0 0 0 0.3377 1 4935 4935 8.7454 2.5396 1 + 15781 31958 10134 10140 19330 19330 0.034500367233818 KECIKCKYPK 10 Unmodified _KECIKCKYPK_ 0 0 0 REV__ENSG00000178187|ENST00000519564|ZNF454 REV__ENSG00000178187|ENST00000519564|ZNF454 MSMS UPN48_class_I_Rep_1 5 620.3323974609375 2 620.333044 1238.65154 NaN NaN NaN NaN NaN NaN NaN 35.707 1 39.218 38.718 39.718 3.5101 0 0 0 0.53105 1 5876 5876 1.3295 0 1 + 15782 20644 10135 10141 19331 19331 0.04175547341742458 KEDAYIPRT 9 Unmodified _KEDAYIPRT_ 0 0 0 nc|ENSG00000164074|Q0P651-4|ABHD18;nc|ENSG00000164074|Q0P651-3|ABHD18;nc|ENSG00000164074|Q0P651-2|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;nc|ENSG00000164074|Q0P651|ABHD18;ENSG00000164074|ENST00000645843|ABHD18 nc|ENSG00000164074|Q0P651-4|ABHD18 nc|ENSG00000164074|Q0P651-4|ABHD18 MULTI-MSMS UPN48_class_I_Rep_2 6 546.7864990234375 2 546.787838 1091.56112 0.44446 0.00024302 -0.66694 -0.00036468 -0.22249 -0.00012165 546.7875560476544 38.633 0.59941 42.35 42.031 42.63 3.7173 69 61 2 0 0 0 0.39745 3 6708 6708;6730;6779 8.1555 0 1 108880 15783 4075 10136 10142 19332;19333;19334 19332 0.01900537609321873 KEDFIKPPW 9 Unmodified _KEDFIKPPW_ 0 0 0 REV__L1M4c_dup1159|chr6:35880750-35881415:+|1.0822548956932798|0.019734991668747|5.78|151.0|38|2|anti-sense REV__L1M4c_dup1159|chr6:35880750-35881415:+|1.0822548956932798|0.019734991668747|5.78|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_2 6 580.309814453125 2 580.310949 1158.60735 NaN NaN NaN NaN NaN NaN NaN 54.259 1 57.841 57.341 58.341 3.5817 0 0 0 0.39428 1 11451 11451 2.0598 0.21551 1 + 15784 24569 10137 10143 19335 19335 0.03438602511437239 KEDGFMDDHL 10 Unmodified _KEDGFMDDHL_ 0 0 0 REV__nc|ENSG00000114374|O00507-2|USP9Y REV__nc|ENSG00000114374|O00507-2|USP9Y MSMS UPN47_class_I_Rep_3 4 603.7567749023438 2 603.75842 1205.50229 NaN NaN NaN NaN NaN NaN NaN 51.946 1 55.151 54.651 55.651 3.2055 0 0 0 0.53105 1 11603 11603 1.3295 0.5359 1 + 15785 18526 10138 10144 19336 19336 -0.09224306747319133 KEDPTSFRL 9 Unmodified _KEDPTSFRL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MSMS UPN48_class_I_Rep_1 5 546.7880249023438 2 546.787838 1091.56112 NaN NaN NaN NaN NaN NaN NaN 38.982 1 42.487 41.987 42.987 3.5048 0 0 0 0.28608 1 6825 6825 11.495 0 1 15786 1562 10139 10145 19337 19337 0.019005376093446102 KEDPTSFRL 9 Unmodified _KEDPTSFRL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS UPN48_class_I_Rep_3 7 546.786865234375 2 546.787838 1091.56112 0.37123 0.00020299 -0.407 -0.00022254 -0.03577 -1.9559E-05 546.7876684483475 38.694 0.53197 42.354 42.12 42.652 3.6595 64 51 2 0 0 0 0.19147 3 6661 6630;6661;6698 21.537 3.3906 1 104510 15787 1562 10139 10145 19338;19339;19340 19339 0.019005376093446102 KEEAPSYRT 9 Unmodified _KEEAPSYRT_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MULTI-MSMS UPN47_class_I_Rep_2 3 540.7684936523438 2 540.769645 1079.52474 0.0041577 2.2484E-06 -0.60952 -0.00032961 -0.60536 -0.00032736 540.769063626329 17.822 0.50697 21.209 21.015 21.522 3.387 92 56 2 0 0 0 0.45441 1 1422 1422 4.897 0 1 53248 15788 823 10140 10146 19341 19341 -0.011843392873743142 KEEAPSYRT 9 Unmodified _KEEAPSYRT_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MULTI-MSMS UPN47_class_I_Rep_3 4 540.76904296875 2 540.769645 1079.52474 -0.3818 -0.00020647 -0.18537 -0.00010024 -0.56718 -0.00030671 540.7693009060199 18.173 0.33784 21.527 21.429 21.767 3.3545 59 37 2 0 0 0 0.47763 1 1471 1471 2.9952 0 1 47951 15789 823 10140 10146 19342 19342 -0.011843392873743142 KEEDIEME 8 Unmodified _KEEDIEME_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MSMS UPN47_class_I_Rep_2 3 511.7332763671875 2 511.720972 1021.42739 NaN NaN NaN NaN NaN NaN NaN 114.66 1 118.16 117.66 118.66 3.5039 0 0 0 0.40604 1 27924 27924 2.5775 0 1 + 15790 21339 10141 10147 19343 19343 -0.08246489278531044 KEEDSERY 8 Unmodified _KEEDSERY_ 0 0 0 ENST00000465870.5_1_2:238536269-238629540:+|nuORF;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1 ENST00000465870.5_1_2:238536269-238629540:+|nuORF ENST00000465870.5_1_2:238536269-238629540:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.2357788085938 2 528.235635 1054.45672 -0.10494 -5.5433E-05 0.2542 0.00013428 0.14926 7.8843E-05 528.2356416736387 32.228 0.5323 35.941 35.728 36.26 3.7131 67 43 2 0 0 0 0.82752 1 5592 5592 2.0598 0 1 107160 15791 6894 10142 10148 19344 19344 -0.06833208938041935 KEEDYIRY 8 Unmodified _KEEDYIRY_ 0 0 0 nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B nc|ENSG00000136104|Q5TBB1-2|RNASEH2B nc|ENSG00000136104|Q5TBB1-2|RNASEH2B MULTI-MSMS UPN47_class_I_Rep_3 4 558.2725830078125 2 558.272021 1114.52949 0.36467 0.00020359 0.44627 0.00024914 0.81094 0.00045273 558.2722219133207 47.758 0.82447 50.998 50.652 51.477 3.2405 138 78 2 0 0 0 0.82752 1 10456 10456 7.2892 1.0834 1 362680 15792 2948 10143 10149 19345 19345 -0.02319455144629501 KEEEVVKYRRR 11 Unmodified _KEEEVVKYRRR_ 0 0 0 ENST00000484142.1_1_2:64068347-64069260:+|nuORF ENST00000484142.1_1_2:64068347-64069260:+|nuORF ENST00000484142.1_1_2:64068347-64069260:+|nuORF MSMS UPN47_class_I_Rep_1 2 497.9511413574219 3 497.951196 1490.83176 NaN NaN NaN NaN NaN NaN NaN 20.016 1 23.628 23.128 24.128 3.6118 0 0 0 0.38417 1 1936 1936 0.094841 0 1 15793 7018 10144 10150 19346 19346 0.1059768559459826 KEEEVVKYRRR 11 Unmodified _KEEEVVKYRRR_ 0 0 0 ENST00000484142.1_1_2:64068347-64069260:+|nuORF ENST00000484142.1_1_2:64068347-64069260:+|nuORF ENST00000484142.1_1_2:64068347-64069260:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.950927734375 3 497.951196 1490.83176 NaN NaN NaN NaN NaN NaN NaN 20.939 1 24.485 23.985 24.985 3.5454 0 0 0 0.38417 1 1843 1843 1.2148 0 1 15794 7018 10144 10150 19347 19347 0.1059768559459826 KEEEVVKYRRR 11 Unmodified _KEEEVVKYRRR_ 0 0 0 ENST00000484142.1_1_2:64068347-64069260:+|nuORF ENST00000484142.1_1_2:64068347-64069260:+|nuORF ENST00000484142.1_1_2:64068347-64069260:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.9515075683594 3 497.951196 1490.83176 NaN NaN NaN NaN NaN NaN NaN 21.063 1 24.608 24.108 25.108 3.5454 0 0 0 0.38417 1 1870 1870 1.2148 0 1 15795 7018 10144 10150 19348 19348 0.1059768559459826 KEELHVCC 8 Unmodified _KEELHVCC_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense MSMS UPN47_class_I_Rep_3 4 480.7168884277344 2 480.717513 959.420473 NaN NaN NaN NaN NaN NaN NaN 117.45 1 120.89 120.39 121.39 3.4425 0 0 0 0.40738 1 28937 28937 0.79363 0 1 + 15796 30238 10145 10151 19349 19349 -0.06086080640102409 KEELHVCC 8 Unmodified _KEELHVCC_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense MSMS UPN48_class_I_Rep_1 5 480.7167053222656 2 480.717513 959.420473 NaN NaN NaN NaN NaN NaN NaN 117.75 1 121.37 120.87 121.87 3.6215 0 0 0 0.40738 1 28698 28698 0.79363 0 1 + 15797 30238 10145 10151 19350 19350 -0.06086080640102409 KEELHVCC 8 Unmodified _KEELHVCC_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense MSMS UPN48_class_I_Rep_2 6 480.71759033203125 2 480.717513 959.420473 NaN NaN NaN NaN NaN NaN NaN 118.29 1 121.95 121.45 122.45 3.6627 0 0 0 0.40738 1 28359 28359 0.79363 0 1 + 15798 30238 10145 10151 19351 19351 -0.06086080640102409 KEERRRRQQ 9 Unmodified _KEERRRRQQ_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MSMS UPN46_class_I_Rep_3 1 643.3628540039062 2 643.363433 1284.71231 0.75329 0.00048464 -2.5588 -0.0016462 -1.8055 -0.0011616 643.3625649393359 107.82 0.5577 107.82 107.74 108.3 0 140 52 4 0 0 0 0.46869 1 26420 26420 3.9444 0.66309 1 53564000 15799 5325 10146 10152 19352 19352 0.08134536760553601 KEERRRRQQ 9 Unmodified _KEERRRRQQ_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MATCH UPN47_class_I_Rep_3 4 2 643.363433 1284.71231 0.51503 0.00033135 -2.1047 -0.0013541 -1.5897 -0.0010227 643.3624852428794 104.29 0.17588 107.81 107.74 107.91 3.5205 -0.01575 -0.0002831 NaN 3.9444 65 28 3 NaN NaN NaN NaN 0 NaN NaN 0 64396000 15800 5325 10146 10152 0.08134536760553601 KEERRRRQQ 9 Unmodified _KEERRRRQQ_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MATCH UPN48_class_I_Rep_1 5 2 643.363433 1284.71231 0.43641 0.00028077 -1.5258 -0.00098167 -1.0894 -0.0007009 643.3623016293504 104.19 0.2286 107.81 107.63 107.85 3.6209 -0.011236 0.00046173 NaN 3.9444 58 36 2 NaN NaN NaN NaN 0 NaN NaN 0 112920000 15801 5325 10146 10152 0.08134536760553601 KEERRRRQQ 9 Unmodified _KEERRRRQQ_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MATCH UPN48_class_I_Rep_2 6 2 643.363433 1284.71231 0.50034 0.0003219 -3.0292 -0.0019489 -2.5289 -0.001627 643.3618774216645 104.11 0.069321 107.81 107.76 107.83 3.6991 -0.01321 -0.0014727 NaN 3.9444 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 24877000 15802 5325 10146 10152 0.08134536760553601 KEERRRRQQ 9 Unmodified _KEERRRRQQ_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MATCH UPN48_class_I_Rep_3 7 2 643.363433 1284.71231 0.64064 0.00041216 -1.286 -0.00082735 -0.64534 -0.00041519 643.3624409027134 104.15 0.096596 107.87 107.79 107.88 3.7192 0.046671 0.00077037 NaN 3.9444 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 91915000 15803 5325 10146 10152 0.08134536760553601 KEESKYNTF 9 Unmodified _KEESKYNTF_ 0 0 0 L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|1|1|sense L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|1|1|sense L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.2785034179688 2 573.277303 1144.54005 -0.36606 -0.00020985 0.32302 0.00018518 -0.04304 -2.4674E-05 573.2775521449346 18.165 0.75002 21.52 21.049 21.799 3.3545 117 84 2 0 0 0 0.49187 1 1528 1528 1.4819 0.15237 1 47010 15804 13711 10147 10153 19353 19353 -0.026434724901946538 KEFDGKSLV 9 Unmodified _KEFDGKSLV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS UPN48_class_I_Rep_1 5 511.7797546386719 2 511.779482 1021.54441 0.29171 0.00014929 -0.44309 -0.00022677 -0.15139 -7.7476E-05 511.77943288835326 32.796 0.3702 36.323 36.085 36.456 3.5266 54 39 2 0 0 0 0.39745 1 5008 5008 8.1555 1.9497 1 84035 15805 1424 10148 10154 19354 19354 0.034500367233931684 KEFDGKSLV 9 Unmodified _KEFDGKSLV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS UPN48_class_I_Rep_2 6 511.77874755859375 2 511.779482 1021.54441 0.31897 0.00016324 -0.48504 -0.00024823 -0.16607 -8.4992E-05 511.7792136846743 32.695 0.45759 36.345 36.08 36.538 3.6497 83 55 2 0 0 0 0.39745 3 5078 5029;5044;5078 8.1555 1.4324 1 69142 15806 1424 10148 10154 19355;19356;19357 19357 0.034500367233931684 KEFDGKSLV 9 Unmodified _KEFDGKSLV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS UPN48_class_I_Rep_3 7 511.7803039550781 2 511.779482 1021.54441 NaN NaN NaN NaN NaN NaN NaN 32.518 1 36.208 35.708 36.708 3.6896 0 0 0 0.29913 1 4953 4953 10.8 1.4164 1 15807 1424 10148 10154 19358 19358 0.034500367233931684 KEFDGKSLV 9 Unmodified _KEFDGKSLV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000517330.1_1_5:77337712-77337985:-|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS UPN48_class_I_Rep_3 7 511.779541015625 2 511.779482 1021.54441 NaN NaN NaN NaN NaN NaN NaN 32.673 1 36.363 35.863 36.863 3.6896 0 0 0 0.34878 1 4994 4994 8.1555 0 1 15808 1424 10148 10154 19359 19359 0.034500367233931684 KEFDKEVK 8 Unmodified _KEFDKEVK_ 0 0 0 ENST00000491845.5_2_3:58978268-59035690:-|nuORF;ENST00000472469.5_2_3:58870372-59035390:-|nuORF;ENSG00000163689|ENST00000482387|CFAP20DC ENST00000491845.5_2_3:58978268-59035690:-|nuORF ENST00000491845.5_2_3:58978268-59035690:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 511.779296875 2 511.779482 1021.54441 0.31897 0.00016324 -0.48504 -0.00024823 -0.16607 -8.4992E-05 511.7792136846743 32.695 0.45759 36.345 36.08 36.538 3.6497 83 55 2 0 0 0 0.82752 1 5013 5013 3.5965 0.60125 1 69142 15809 4032 10149 10155 19360 19360 0.034500367233818 KEFEQIEQL 9 Unmodified _KEFEQIEQL_ 0 0 0 chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1;ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1 chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1 MULTI-MSMS UPN48_class_I_Rep_1 5 582.2998657226562 2 582.300778 1162.587 0.39702 0.00023118 -0.14211 -8.275E-05 0.25491 0.00014843 582.3006340512368 48.517 0.43819 52.041 51.849 52.288 3.5239 39 27 3 0 0 0 0.24411 2 9721 9681;9721 17.443 2.6044 1 142110 15810 612 10150 10156 19361;19362 19362 0.012213870609457445 KEFEQIEQL 9 Unmodified _KEFEQIEQL_ 0 0 0 chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1;ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1 chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1 MULTI-MSMS UPN48_class_I_Rep_2 6 582.3006591796875 2 582.300778 1162.587 0.38475 0.00022404 -0.51542 -0.00030013 -0.13068 -7.6093E-05 582.3004764848182 48.336 0.57362 52.072 51.719 52.293 3.7361 67 40 2 0 0 0 0.14474 4 9620 9580;9620;9666;9682 26.021 5.4398 1 171880 15811 612 10150 10156 19363;19364;19365;19366 19364 0.012213870609457445 KEFEQIEQL 9 Unmodified _KEFEQIEQL_ 0 0 0 chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1;ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1 chr5:50399290-50402286|90|12.24|0.38|5.0|-|1|EMB,EMB|1 MULTI-MSMS UPN48_class_I_Rep_3 7 582.301513671875 2 582.300778 1162.587 0.40469 0.00023565 -0.072789 -4.2385E-05 0.3319 0.00019327 582.300419711162 48.557 0.67067 52.191 51.821 52.492 3.6339 89 51 3 0 0 0 0.16787 2 9636 9579;9636 23.801 8.0624 1 152050 15812 612 10150 10156 19367;19368 19368 0.012213870609457445 KEFIASNLK 9 Unmodified _KEFIASNLK_ 0 0 0 REV__L1MD_dup1428|chr3:15772376-15772669:+|1.5845977102563087|0.0036722036238462|8.75|151.0|10|3|sense REV__L1MD_dup1428|chr3:15772376-15772669:+|1.5845977102563087|0.0036722036238462|8.75|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 525.3028564453125 2 525.303124 1048.5917 0.31931 0.00016774 -0.46153 -0.00024244 -0.14221 -7.4705E-05 525.3027710053738 40.286 0.41628 43.791 43.565 43.982 3.5048 45 32 2 0 0 0 0.39745 1 7189 7189 8.1555 1.4324 1 92875 + 15813 27263 10151 10157 19369 19369 0.06934315994362805 KEFLDYQL 8 Unmodified _KEFLDYQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MSMS UPN47_class_I_Rep_1 2 528.27392578125 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 86.595 1 90.21 89.71 90.71 3.6153 0 0 0 0.40157 1 21633 21633 7.2892 0 1 15814 1815 10152 10158 19370 19370 0.008426343491009902 KEFLSHWEV 9 Unmodified _KEFLSHWEV_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|55|3|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 587.798583984375 2 587.798206 1173.58186 NaN NaN NaN NaN NaN NaN NaN 45.57 1 49.086 48.586 49.586 3.5162 0 0 0 0.38639 1 8801 8801 3.9444 0.3479 1 + 15815 26316 10153 10159 19371 19371 0.0020112798899845075 KEFLSHWEV 9 Unmodified _KEFLSHWEV_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|55|3|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|55|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.7986450195312 2 587.798206 1173.58186 0.39767 0.00023375 0.071786 4.2196E-05 0.46946 0.00027595 587.7978638845743 45.174 0.6995 48.932 48.638 49.338 3.7579 75 52 2 0 0 0 0.48846 1 8650 8650 1.8442 0.19162 1 160400 + 15816 26316 10153 10159 19372 19372 0.0020112798899845075 KEFPEKQEL 9 Unmodified _KEFPEKQEL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MSMS UPN48_class_I_Rep_2 6 574.3041381835938 2 574.303321 1146.59209 NaN NaN NaN NaN NaN NaN NaN 28.023 1 31.654 31.154 32.154 3.6311 0 0 0 0.36857 1 3801 3801 7.1017 0.89594 1 15817 3874 10154 10160 19373 19373 0.0246569092360005 KEFPEKQEL 9 Unmodified _KEFPEKQEL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN48_class_I_Rep_3 7 574.3042602539062 2 574.303321 1146.59209 0.3673 0.00021094 0.10759 6.1787E-05 0.47488 0.00027273 574.3034203242308 28.081 0.63127 31.823 31.458 32.09 3.7424 99 70 2 0 0 0 0.35123 3 3736 3736;3769;3813 10.8 1.6157 1 81949 15818 3874 10154 10160 19374;19375;19376 19374 0.0246569092360005 KEFPEKQEL 9 Unmodified _KEFPEKQEL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 574.303321 1146.59209 0.48287 0.00027731 0.83341 0.00047863 1.3163 0.00075594 574.3040419241514 27.902 0.042114 31.459 31.425 31.467 3.5571 -0.18208 0.00075004 NaN 10.8 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 39460 15819 3874 10154 10160 0.0246569092360005 KEFPLLQF 8 Unmodified _KEFPLLQF_ 0 0 0 L1MA7_dup3600|chr7:92883762-92884616:+|1.551161724051895|0.0006109328410753|11.31|149.0|44|2|anti-sense L1MA7_dup3600|chr7:92883762-92884616:+|1.551161724051895|0.0006109328410753|11.31|149.0|44|2|anti-sense L1MA7_dup3600|chr7:92883762-92884616:+|1.551161724051895|0.0006109328410753|11.31|149.0|44|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.2895812988281 2 511.289485 1020.56442 0.31121 0.00015912 -0.017647 -9.0226E-06 0.29357 0.0001501 511.2893455198161 89.117 0.83302 92.946 92.554 93.387 3.8293 236 106 3 0 0 0 0.82752 1 21104 21104 27.629 3.6082 1 559890 15820 10020 10155 10161 19377 19377 0.05495832454005267 KEFQEKLK 8 Unmodified _KEFQEKLK_ 0 0 0 REV__ENST00000464285.5_1_20:25434089-25439234:-|nuORF REV__ENST00000464285.5_1_20:25434089-25439234:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 525.3030395507812 2 525.303124 1048.5917 0.3442 0.00018081 -0.48001 -0.00025215 -0.13581 -7.134E-05 525.3027697531469 39.892 0.47628 43.634 43.396 43.872 3.7413 67 47 2 0 0 0 0.82752 1 7119 7119 24.991 0 1 118240 + 15821 18141 10156 10162 19378 19378 0.06934315994362805 KEFRTWTH 8 Unmodified _KEFRTWTH_ 0 0 0 LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|16|1|anti-sense LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|16|1|anti-sense LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7835693359375 2 552.78289 1103.55123 NaN NaN NaN NaN NaN NaN NaN 28.864 1 32.363 31.863 32.863 3.4986 0 0 0 0.40746 1 4540 4540 0.69038 0 1 15822 15733 10157 10163 19379 19379 0.0035939439460435096 KEFRTWTH 8 Unmodified _KEFRTWTH_ 0 0 0 LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|16|1|anti-sense LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|16|1|anti-sense LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7462768554688 2 552.78289 1103.55123 NaN NaN NaN NaN NaN NaN NaN 119.2 1 122.68 122.18 123.18 3.4793 0 0 0 0.40746 1 29191 29191 0.69038 0 1 15823 15733 10157 10163 19380 19380 0.0035939439460435096 KEFSLFTYI 9 Unmodified _KEFSLFTYI_ 0 0 0 REV__L1ME1_dup1531|chr1:155443423-155443979:-|2.1753087662926176|0.0381043275510274|5.84|151.0|35|2|anti-sense REV__L1ME1_dup1531|chr1:155443423-155443979:-|2.1753087662926176|0.0381043275510274|5.84|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_2 6 574.3033447265625 2 574.305332 1146.59611 NaN NaN NaN NaN NaN NaN NaN 28.43 1 32.061 31.561 32.561 3.6311 0 0 0 0.37692 1 3911 3911 6.2058 0.47393 1 + 15824 27611 10158 10164 19381 19381 0.028677804173184995 KEFSNLISL 9 Unmodified _KEFSNLISL_ 0 0 0 ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3 ENST00000602905.1_1_19:49651881-49653392:+|nuORF ENST00000602905.1_1_19:49651881-49653392:+|nuORF MSMS UPN48_class_I_Rep_3 7 525.7949829101562 2 525.795132 1049.57571 NaN NaN NaN NaN NaN NaN NaN 30.22 1 33.935 33.435 34.435 3.7146 0 0 0 0.3824 1 4331 4331 4.897 0 1 15825 4788 10159 10165 19382 19382 0.052906097574805244 KEFTGGTPDPP 11 Unmodified _KEFTGGTPDPP_ 0 0 0 REV__ENST00000281543.5_1_4:44680449-44680617:+|nuORF REV__ENST00000281543.5_1_4:44680449-44680617:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 573.27734375 2 573.277303 1144.54005 -0.12877 -7.3818E-05 0.16769 9.6133E-05 0.038926 2.2315E-05 573.2773581638181 17.418 1.1676 20.969 20.627 21.795 3.5504 270 141 3 0 0 0 0.67113 1 1221 1221 1.3295 1.3295 1 69158 + 15826 21623 10160 10166 19383 19383 -0.026434724901946538 KEGQGTSY 8 Unmodified _KEGQGTSY_ 0 0 0 THE1B_dup19739|chr16:23853831-23854192:-|1.5373708361791143|0.0082567651027149|7.54|151.0|22|2|anti-sense THE1B_dup19739|chr16:23853831-23854192:-|1.5373708361791143|0.0082567651027149|7.54|151.0|22|2|anti-sense THE1B_dup19739|chr16:23853831-23854192:-|1.5373708361791143|0.0082567651027149|7.54|151.0|22|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 435.2037353515625 2 435.203607 868.392661 -0.13671 -5.9499E-05 -0.033721 -1.4675E-05 -0.17044 -7.4174E-05 435.2035978241901 28.996 0.52071 28.996 28.716 29.236 0 74 42 2 0 0 0 0.82752 1 4537 4537 24.021 0 1 136200 15827 32882 10161 10167 19384 19384 -0.04679944304336914 KEHDEWNH 8 Unmodified _KEHDEWNH_ 0 0 0 L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|124|3|sense L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|124|3|sense L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|124|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.7357177734375 2 547.736137 1093.45772 -0.060645 -3.3217E-05 -0.039525 -2.1649E-05 -0.10017 -5.4866E-05 547.7362343596284 20.016 0.77829 23.628 23.322 24.1 3.6118 170 84 3 0 0 0 0.82752 1 1974 1974 2.0598 0.21551 1 72443 15828 15201 10162 10168 19385 19385 -0.0852694977847932 KEHKAEILAL 10 Unmodified _KEHKAEILAL_ 0 0 0 nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT nc|ENSG00000122966|O14578-3|CIT nc|ENSG00000122966|O14578-3|CIT MSMS UPN47_class_I_Rep_1 2 576.360107421875 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 84.428 1 87.993 87.493 88.493 3.5655 0 0 0 0.53105 1 21122 21122 1.3295 0.63916 1 15829 2404 10163 10169 19386 19386 0.10169962948543798 KEHLKLYY 8 Unmodified _KEHLKLYY_ 0 0 0 REV__ENSG00000205085|ENST00000682356|GARIN1A REV__ENSG00000205085|ENST00000682356|GARIN1A MSMS UPN47_class_I_Rep_3 4 547.2308959960938 2 547.305667 1092.59678 NaN NaN NaN NaN NaN NaN NaN 23.236 1 26.587 26.087 27.087 3.3503 0 0 0 0.40738 1 2919 2919 0.79363 0 1 + 15830 21214 10164 10170 19387 19387 0.05418619856982332 KEHSTQQPQN 10 Unmodified _KEHSTQQPQN_ 0 0 0 L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|23|1|sense L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|23|1|sense L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|23|1|sense MSMS UPN47_class_I_Rep_1 2 598.782470703125 2 598.786358 1195.55816 NaN NaN NaN NaN NaN NaN NaN 43.971 1 47.666 47.166 48.166 3.6951 0 0 0 0.53105 1 9096 9096 1.3295 0.13619 1 15831 14082 10165 10171 19388 19388 -0.03179337515462066 KEHVYTFSY 9 Unmodified _KEHVYTFSY_ 0 0 0 REV__L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|69|1|anti-sense REV__L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|69|1|anti-sense MSMS UPN48_class_I_Rep_2 6 587.2807006835938 2 587.282389 1172.55022 NaN NaN NaN NaN NaN NaN NaN 28.038 1 31.669 31.169 32.169 3.6311 0 0 0 0.39598 1 3805 3805 1.6526 0.17072 1 + 15832 28755 10166 10172 19389 19389 -0.02914864764943559 KEIDEVGDLL 10 Unmodified _KEIDEVGDLL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS UPN48_class_I_Rep_1 5 565.7999877929688 2 565.800611 1129.58667 0.54387 0.00030772 -0.55448 -0.00031372 -0.010603 -5.9994E-06 565.8003331572515 58.273 0.54549 61.76 61.531 62.077 3.487 47 30 2 0 0 0 0.31951 2 12701 12701;12746 27.223 11.074 1 127220 15833 1520 10167 10173 19390;19391 19390 0.027059673411031326 KEIDEVGDLL 10 Unmodified _KEIDEVGDLL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS UPN48_class_I_Rep_2 6 565.801025390625 2 565.800611 1129.58667 0.58288 0.0003298 -0.30624 -0.00017327 0.27664 0.00015653 565.8004375351904 58.243 0.52213 61.741 61.498 62.02 3.4987 52 30 2 0 0 0 0.32913 3 12671 12671;12691;12737 26.021 10.772 1 166720 15834 1520 10167 10173 19392;19393;19394 19392 0.027059673411031326 KEIDEVGDLL 10 Unmodified _KEIDEVGDLL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS UPN48_class_I_Rep_3 7 565.8015747070312 2 565.800611 1129.58667 0.38291 0.00021665 0.27831 0.00015747 0.66122 0.00037412 565.8006743046926 58.16 0.52443 61.692 61.442 61.967 3.5317 57 34 2 0 0 0 0.34145 2 12589 12589;12614 24.882 9.6331 1 138380 15835 1520 10167 10173 19395;19396 19395 0.027059673411031326 KEIDSVKYL 9 Unmodified _KEIDSVKYL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MULTI-MSMS UPN47_class_I_Rep_1 2 547.8071899414062 2 547.808239 1093.60193 0.0017291 9.472E-07 -0.5587 -0.00030606 -0.55698 -0.00030512 547.8078524200174 36.824 0.68163 40.493 40.2 40.882 3.6692 95 58 2 0 0 0 0.15661 3 6929 6892;6929;6968 24.882 9.6156 1 148430 15836 2588 10168 10174 19397;19398;19399 19398 0.058868789289590495 KEIDSVKYL 9 Unmodified _KEIDSVKYL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MULTI-MSMS UPN47_class_I_Rep_2 3 547.8071899414062 2 547.808239 1093.60193 0.023203 1.2711E-05 -0.56722 -0.00031073 -0.54402 -0.00029802 547.8077267568583 37.27 0.50103 40.668 40.429 40.93 3.3988 54 35 2 0 0 0 0.10956 1 7107 7107 32.037 10.501 1 110740 15837 2588 10168 10174 19400 19400 0.058868789289590495 KEIDSVKYL 9 Unmodified _KEIDSVKYL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MSMS UPN47_class_I_Rep_2 3 547.8070068359375 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 37.067 1 40.466 39.966 40.966 3.3988 0 0 0 0.28608 1 7025 7025 11.495 1.4208 1 15838 2588 10168 10174 19401 19401 0.058868789289590495 KEIDSVKYL 9 Unmodified _KEIDSVKYL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MSMS UPN47_class_I_Rep_2 3 547.8080444335938 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 37.197 1 40.596 40.096 41.096 3.3988 0 0 0 0.064159 1 7066 7066 32.898 14.525 1 15839 2588 10168 10174 19402 19402 0.058868789289590495 KEIDSVKYL 9 Unmodified _KEIDSVKYL_ 0 0 0 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 ENSG00000128340|ENST00000249071|RAC2 MULTI-MSMS UPN47_class_I_Rep_3 4 548.3094482421875 2 547.808239 1093.60193 -0.084502 -4.6291E-05 -0.36054 -0.00019751 -0.44504 -0.0002438 547.8077817055034 37.315 0.75647 40.562 40.24 40.997 3.247 85 56 2 0 0 0 0.13455 4 7168 7116;7126;7168;7208 27.223 9.0769 1 99374 15840 2588 10168 10174 19403;19404;19405;19406 19405 0.058868789289590495 KEIEFGTSL 9 Unmodified _KEIEFGTSL_ 0 0 0 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;nc|ENSG00000159023|P11171-7|EPB41;ENST00000349460.8_1_1:29313949-29315882:+|nuORF;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;nc|ENSG00000159023|P11171-5|EPB41 nc|ENSG00000159023|P11171-5|EPB41 MSMS UPN48_class_I_Rep_1 5 512.2703857421875 2 512.27149 1022.52843 NaN NaN NaN NaN NaN NaN NaN 49.25 1 52.774 52.274 53.274 3.5239 0 0 0 0.29913 1 9933 9933 10.8 2.0541 1 15841 3818;3819 10169 10175 19407 19407 0.018063304864881502 KEIFERRR 8 Unmodified _KEIFERRR_ 0 0 0 nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN47_class_I_Rep_1 2 567.329833984375 2 567.330539 1132.64652 0.41842 0.00023738 -0.70549 -0.00040025 -0.28707 -0.00016286 567.3300186543671 81.645 0.89778 85.158 84.718 85.615 3.5122 160 100 2 0 0 0 0.82752 1 20369 20369 1.8442 1.8442 1 224520 15842 16613 10170 10176 19408 19408 0.08550747585650242 KEIFERRR 8 Unmodified _KEIFERRR_ 0 0 0 nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN47_class_I_Rep_2 3 567.329345703125 2 567.330539 1132.64652 0.52536 0.00029805 -1.2051 -0.00068368 -0.67972 -0.00038562 567.3296242380662 82.576 0.19019 85.974 85.88 86.07 3.3984 33 23 2 0 0 0 0.82752 1 20593 20593 0.6015 0 1 104850 15843 16613 10170 10176 19409 19409 0.08550747585650242 KEIFERRR 8 Unmodified _KEIFERRR_ 0 0 0 nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN48_class_I_Rep_1 5 567.0202026367188 2 567.330539 1132.64652 0.43501 0.00024679 0.02966 1.6827E-05 0.46467 0.00026362 567.3305113382103 81.93 0.44754 85.505 85.318 85.766 3.5753 85 54 2 0 0 0 0.82752 1 19527 19527 0.6015 0.6015 1 125380 15844 16613 10170 10176 19410 19410 0.08550747585650242 KEIFERRR 8 Unmodified _KEIFERRR_ 0 0 0 nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN48_class_I_Rep_1 5 567.0200805664062 2 567.330539 1132.64652 0.43407 0.00024626 -0.44004 -0.00024965 -0.0059686 -3.3862E-06 567.3301887175672 82.243 0.1978 85.818 85.766 85.964 3.5753 39 24 2 0 0 0 0.82752 2 19623 19623;19661 0.6015 0.6015 1 88746 15845 16613 10170 10176 19411;19412 19411 0.08550747585650242 KEIFERRR 8 Unmodified _KEIFERRR_ 0 0 0 nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN48_class_I_Rep_3 7 567.3311157226562 2 567.330539 1132.64652 0.48222 0.00027358 0.29986 0.00017012 0.78208 0.0004437 567.3306192659659 81.177 0.43725 84.854 84.577 85.015 3.6772 82 55 2 0 0 0 0.82752 1 19226 19226 1.8442 1.8442 1 319390 15846 16613 10170 10176 19413 19413 0.08550747585650242 KEIFERRR 8 Unmodified _KEIFERRR_ 0 0 0 nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN48_class_I_Rep_3 7 567.330810546875 2 567.330539 1132.64652 0.4807 0.00027271 -0.44396 -0.00025187 0.036733 2.084E-05 567.3301008944583 81.883 0.32313 85.568 85.465 85.788 3.6851 65 39 2 0 0 0 0.82752 1 19421 19421 0.6015 0.076735 1 133340 15847 16613 10170 10176 19414 19414 0.08550747585650242 KEIFLRELI 9 Unmodified _KEIFLRELI_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-SECPEP UPN48_class_I_Rep_1 5 581.2764892578125 2 580.855524 1159.69649 0.57543 0.00033424 -0.38241 -0.00022213 0.19302 0.00011211 580.8551710266178 60.616 0.55643 64.09 63.888 64.444 3.4737 62 42 2 0 0 0 0.08417 1 13477 13477 27.223 6.8087 1 144010 15848 1207;1424;4254 10171 10177 19415 19415 0.12303437470950485 KEIFLRELI 9 Unmodified _KEIFLRELI_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_2 6 580.8551635742188 2 580.855524 1159.69649 0.54918 0.00031899 -0.17821 -0.00010351 0.37097 0.00021548 580.8553085831587 60.4 0.50489 63.878 63.681 64.186 3.4785 81 45 2 0 0 0 0.37318 1 13417 13417 9.544 1.935 1 166130 15849 1207;1424;4254 10171 10177 19416 19416 0.12303437470950485 KEIFLRELI 9 Unmodified _KEIFLRELI_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MSMS UPN48_class_I_Rep_3 7 580.8560791015625 2 580.855524 1159.69649 NaN NaN NaN NaN NaN NaN NaN 60.224 1 63.74 63.24 64.24 3.5169 0 0 0 0.22295 1 13212 13212 14.957 0 1 15850 1207;1424;4254 10171 10177 19417 19417 0.12303437470950485 KEIFLRELI 9 Unmodified _KEIFLRELI_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 580.855524 1159.69649 0.54918 0.00031899 -0.17821 -0.00010351 0.37097 0.00021548 580.8553085831587 60.4 0.50489 63.878 63.681 64.186 3.4785 -0.10586 0.0001076 NaN 21.59 81 45 2 NaN NaN NaN NaN 0 NaN NaN 0 166130 15851 1207;1424;4254 10171 10177 0.12303437470950485 KEIFQKAH 8 Unmodified _KEIFQKAH_ 0 0 0 L1MEg_dup10733|chr12:105134051-105135669:-|1.0455658301672688|0.0695870739376053|3.91|150.0|20|1|sense L1MEg_dup10733|chr12:105134051-105135669:-|1.0455658301672688|0.0695870739376053|3.91|150.0|20|1|sense L1MEg_dup10733|chr12:105134051-105135669:-|1.0455658301672688|0.0695870739376053|3.91|150.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 500.7649841308594 2 500.782359 999.550165 NaN NaN NaN NaN NaN NaN NaN 114.94 1 114.94 114.44 115.44 0 0 0 0 0.40643 1 28425 28425 2.0598 0 1 15852 13353 10172 10178 19418 19418 0.05037180025703947 KEIGELTQL 9 Unmodified _KEIGELTQL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-SECPEP UPN48_class_I_Rep_1 5 516.2256469726562 2 515.792589 1029.57063 0.24387 0.00012579 -0.42872 -0.00022113 -0.18485 -9.5342E-05 515.7920135361533 47.109 0.47649 50.628 50.354 50.831 3.5192 64 27 3 0 0 0 0.080493 1 9216 9216 29.437 5.6474 1 201250 15853 3512 10173 10179 19419 19419 0.057023058948516336 KEIGELTQL 9 Unmodified _KEIGELTQL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-SECPEP UPN48_class_I_Rep_2 6 516.2257080078125 2 515.792589 1029.57063 0.24985 0.00012887 -0.91086 -0.00046981 -0.66101 -0.00034094 515.7918218007493 46.785 0.54097 50.535 50.25 50.791 3.7494 70 35 3 0 0 0 0.043825 1 9160 9160 42.312 5.8063 1 292580 15854 3512 10173 10179 19420 19420 0.057023058948516336 KEIGELTQL 9 Unmodified _KEIGELTQL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-SECPEP UPN48_class_I_Rep_3 7 516.2255859375 2 515.792589 1029.57063 0.26498 0.00013667 -0.65397 -0.00033731 -0.38899 -0.00020064 515.7920249257412 47 0.53771 50.636 50.329 50.866 3.6363 79 34 3 0 0 0 0.044529 1 9153 9153 49.527 11.352 1 261860 15855 3512 10173 10179 19421 19421 0.057023058948516336 KEIGTSRVHGW 11 Unmodified _KEIGTSRVHGW_ 0 0 0 HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|28|1|anti-sense HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|28|1|anti-sense HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_1 2 634.879638671875 2 635.338561 1268.66257 NaN NaN NaN NaN NaN NaN NaN 107.31 1 110.98 110.48 111.48 3.6724 0 0 0 0.38417 1 26292 26292 4.897 0.70751 1 15856 7857 10174 10180 19422 19422 0.03898409031899064 KEIIVNNYK 9 Unmodified _KEIIVNNYK_ 0 0 0 L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|2|1|sense L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|2|1|sense L1MB1_dup4123|chr11:31733507-31735392:+|4.275928575373144|0.0413787528065451|6.69|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 561.3220825195312 2 560.821681 1119.62881 -0.032823 -1.8408E-05 -0.32742 -0.00018362 -0.36024 -0.00020203 560.8215312795834 40.221 0.6566 43.459 43.033 43.689 3.2372 56 41 2 0 0 0 0.42249 1 8012 8012 6.7232 0 1 80831 15857 10184 10175 10181 19423 19423 0.07377987540121467 KEIKKKKKA 9 Unmodified _KEIKKKKKA_ 0 0 0 HERV15-int_dup74|chr16:20676895-20677481:+|1.0905794871436938|0.2057840023413653|2.41|148.0|17|3|sense HERV15-int_dup74|chr16:20676895-20677481:+|1.0905794871436938|0.2057840023413653|2.41|148.0|17|3|sense HERV15-int_dup74|chr16:20676895-20677481:+|1.0905794871436938|0.2057840023413653|2.41|148.0|17|3|sense MSMS UPN47_class_I_Rep_2 3 550.8802490234375 2 550.879333 1099.74411 NaN NaN NaN NaN NaN NaN NaN 108.7 1 112.23 111.73 112.73 3.5333 0 0 0 0.38478 1 26395 26395 4.3292 2.485 1 15858 8004 10176 10182 19424 19424 0.19823136461786817 KEIKLTQVF 9 Unmodified _KEIKLTQVF_ 0 0 0 REV__ENSG00000081870|ENST00000194214|IFT25 REV__ENSG00000081870|ENST00000194214|IFT25 MSMS UPN48_class_I_Rep_3 7 553.332763671875 2 553.334424 1104.6543 NaN NaN NaN NaN NaN NaN NaN 87.624 1 91.415 90.915 91.915 3.7905 0 0 0 0.39036 1 20791 20791 2.9952 0.26005 1 + 15859 17916 10177 10183 19425 19425 0.10615462062560255 KEIKPILLKFF 11 Unmodified _KEIKPILLKFF_ 0 0 0 L1M3_dup3367|chr9:92978935-92980030:-|1.916816469423412|0.0158452949404311|6.92|151.0|6|1|sense L1M3_dup3367|chr9:92978935-92980030:-|1.916816469423412|0.0158452949404311|6.92|151.0|6|1|sense L1M3_dup3367|chr9:92978935-92980030:-|1.916816469423412|0.0158452949404311|6.92|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 459.2796630859375 3 459.295241 1374.86389 NaN NaN NaN NaN NaN NaN NaN 66.586 1 69.771 69.271 70.271 3.1853 0 0 0 0.38417 1 16070 16070 2.4348 1.4212 1 15860 8760 10178 10184 19426 19426 0.1914570501567141 KEIKQGTGKT 10 Unmodified _KEIKQGTGKT_ 0 0 0 REV__L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|2|1|sense REV__L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 545.3171997070312 2 545.316763 1088.61897 0.44713 0.00024383 0.13645 7.4408E-05 0.58358 0.00031824 545.3168055500869 82.885 0.42815 86.472 86.311 86.739 3.5871 85 46 2 0 0 0 0.56189 1 19776 19776 2.4985 2.4985 1 113190 + 15861 29311 10179 10185 19427 19427 0.07820799534761136 KEILDTAL 8 Unmodified _KEILDTAL_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-SECPEP UPN48_class_I_Rep_2 6 451.8872375488281 2 451.7633 901.512048 0.062293 2.8142E-05 0.022709 1.0259E-05 0.085002 3.8401E-05 451.7631393079465 46.574 0.50951 50.323 49.986 50.496 3.7494 41 32 2 0 0 0 0.72333 1 9136 9136 6.7232 1.9672 1 90464 15862 1520 10180 10186 19428 19428 0.05735249320355251 KEIQIKTTN 9 Unmodified _KEIQIKTTN_ 0 0 0 L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|3|1|sense L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|3|1|sense L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 537.8130493164062 2 537.811313 1073.60807 NaN NaN NaN NaN NaN NaN NaN 109.54 1 109.54 109.04 110.04 0 0 0 0 0.32573 1 26912 26912 9.3831 0 1 15863 12738 10181 10187 19429 19429 0.07421397160487686 KEIRHREKV 9 Unmodified _KEIRHREKV_ 0 0 0 LTR5B_dup412|chr19:57828963-57829955:+|3.7978476475290095|0.0737454085689117|5.69|151.0|45|2|anti-sense LTR5B_dup412|chr19:57828963-57829955:+|3.7978476475290095|0.0737454085689117|5.69|151.0|45|2|anti-sense LTR5B_dup412|chr19:57828963-57829955:+|3.7978476475290095|0.0737454085689117|5.69|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 597.8564453125 2 597.856921 1193.69929 0.55911 0.00033427 -0.88823 -0.00053104 -0.32912 -0.00019677 597.8560645566207 83.197 0.92611 86.903 86.469 87.395 3.7066 161 121 2 0 0 0 0.49187 1 19763 19763 1.4819 0 1 147630 15864 15689 10182 10188 19430 19430 0.11018705648439209 KEIRQLLPYL 10 Unmodified _KEIRQLLPYL_ 0 0 0 REV__L1MEg_dup8309|chr9:125501334-125502091:-|1.047722532286527|0.1249198454849551|3.07|151.0|5|1|sense REV__L1MEg_dup8309|chr9:125501334-125502091:-|1.047722532286527|0.1249198454849551|3.07|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 636.8886108398438 2 636.887355 1271.76016 0.6258 0.00039856 0.62529 0.00039824 1.2511 0.0007968 636.887473438631 108.69 0.57635 112.36 112.19 112.77 3.6751 128 63 3 0 0 0 0.56033 1 25706 25706 3.5965 0.60125 1 17076000 + 15865 28784 10183 10189 19431 19431 0.1351479790803296 KEIRRHSRR 9 Unmodified _KEIRRHSRR_ 0 0 0 REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 619.37109375 2 619.371061 1236.72757 0.49234 0.00030494 0.64812 0.00040143 1.1405 0.00070637 619.3712698368914 92.723 0.52274 96.486 96.215 96.738 3.7629 104 73 2 0 0 0 0.48846 2 22032 22032;22062 1.8442 0.19162 1 246030 + 15866 19180 10184 10190 19432;19433 19432 0.11867448348380094 KEIRWYRL 8 Unmodified _KEIRWYRL_ 0 0 0 REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF MSMS UPN46_class_I_Rep_3 1 582.3358764648438 2 582.337833 1162.66111 NaN NaN NaN NaN NaN NaN NaN 88.609 1 88.609 88.109 89.109 0 0 0 0 0.40753 1 21287 21287 0.6015 0 1 + 15867 18123 10185 10191 19434 19434 0.08628819733780801 KEISSLREK 9 Unmodified _KEISSLREK_ 0 0 0 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 MULTI-MSMS UPN47_class_I_Rep_1 2 545.3167724609375 2 545.316763 1088.61897 0.47423 0.0002586 0.10344 5.6407E-05 0.57767 0.00031501 545.3166379261304 81.993 2.4989 85.505 84.364 86.863 3.5122 464 274 3 0 0 0 0.47763 1 20322 20322 2.9952 0 1 499320 + 15868 20522 10186 10192 19435 19435 0.07820799534761136 KEISSLREK 9 Unmodified _KEISSLREK_ 0 0 0 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 MULTI-MSMS UPN47_class_I_Rep_2 3 545.3165283203125 2 545.316763 1088.61897 0.48765 0.00026593 0.0049452 2.6967E-06 0.4926 0.00026862 545.316591400619 81.667 1.5836 85.051 84.262 85.845 3.384 431 189 3 0 0 0 0.47763 1 20448 20448 2.9952 2.9952 1 715200 + 15869 20522 10186 10192 19436 19436 0.07820799534761136 KEISSLREK 9 Unmodified _KEISSLREK_ 0 0 0 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.38104 0.00020779 0.2692 0.0001468 0.65024 0.00035459 545.3167849193663 85.188 0.25197 85.188 85.037 85.289 0 -0.059945 0.00021233 NaN 2.9952 45 27 3 NaN NaN NaN NaN 0 NaN NaN 0 974590 + 15870 20522 10186 10192 0.07820799534761136 KEISSLREK 9 Unmodified _KEISSLREK_ 0 0 0 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 REV__ENSG00000196275|ENST00000451013|GTF2IRD2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 545.316763 1088.61897 0.48765 0.00026593 0.0049452 2.6967E-06 0.4926 0.00026862 545.316591400619 81.667 1.5836 85.051 84.262 85.845 3.384 -0.19699 -7.5867E-05 NaN 2.9952 431 189 3 NaN NaN NaN NaN 0 NaN NaN 0 715200 + 15871 20522 10186 10192 0.07820799534761136 KEITKAFPVG 10 Unmodified _KEITKAFPVG_ 0 0 0 REV__L1PA3_dup1269|chr2:157397600-157403696:-|15.433417171013303|0.3140448584091643|5.62|151.0|222|1|anti-sense REV__L1PA3_dup1269|chr2:157397600-157403696:-|15.433417171013303|0.3140448584091643|5.62|151.0|222|1|anti-sense MSMS UPN48_class_I_Rep_1 5 545.3170776367188 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 79.382 1 82.917 82.417 83.417 3.5352 0 0 0 0.53105 1 18946 18946 2.9952 0 1 + 15872 29510 10187 10193 19437 19437 0.08222889028456848 KEITKIAAEV 10 Unmodified _KEITKIAAEV_ 0 0 0 L1PB3_dup2459|chr10:76367747-76369710:-|1.611445571224833|0.0129156831038127|6.96|150.0|35|2|sense L1PB3_dup2459|chr10:76367747-76369710:-|1.611445571224833|0.0129156831038127|6.96|150.0|35|2|sense L1PB3_dup2459|chr10:76367747-76369710:-|1.611445571224833|0.0129156831038127|6.96|150.0|35|2|sense MSMS UPN47_class_I_Rep_3 4 550.879638671875 2 551.329339 1100.64412 NaN NaN NaN NaN NaN NaN NaN 108.16 1 111.7 111.2 112.2 3.5382 0 0 0 0.53105 1 26447 26447 11.495 0.67078 1 15873 15271 10188 10194 19438 19438 0.09782854337322533 KEKEKKNR 8 Unmodified _KEKEKKNR_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-SECPEP UPN46_class_I_Rep_3 1 530.2860717773438 2 530.317097 1058.61964 -0.26948 -0.00014291 -0.57388 -0.00030434 -0.84336 -0.00044725 530.3165700717927 12.803 0.14967 12.803 12.731 12.88 0 17 12 2 0 0 0 0.72333 1 207 207 7.9102 0 1 48483 15874 1527 10189 10195 19439 19439 0.09267638974461079 KEKEKLVSY 9 Unmodified _KEKEKLVSY_ 0 0 0 L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|5|1|sense L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|5|1|sense L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 562.3350219726562 2 562.321514 1122.62847 NaN NaN NaN NaN NaN NaN NaN 37.407 1 37.407 36.907 37.907 0 0 0 0 0.35339 1 7031 7031 7.9102 0.62092 1 15875 9186 10190 10196 19440 19440 0.07206567820298915 KEKFQLQY 8 Unmodified _KEKFQLQY_ 0 0 0 REV__nc|ENSG00000141255|Q8NHS9-3|SPATA22 REV__nc|ENSG00000141255|Q8NHS9-3|SPATA22 MULTI-MSMS UPN48_class_I_Rep_2 6 542.2954711914062 2 542.295299 1082.57605 0.3814 0.00020683 -0.33074 -0.00017936 0.050661 2.7473E-05 542.2949264595718 48.113 0.63895 51.849 51.528 52.167 3.7361 63 43 2 0 0 0 0.82752 1 9543 9543 44.407 0 1 139700 + 15876 19368 10191 10197 19441 19441 0.038060294773458736 KEKFQLQY 8 Unmodified _KEKFQLQY_ 0 0 0 REV__nc|ENSG00000141255|Q8NHS9-3|SPATA22 REV__nc|ENSG00000141255|Q8NHS9-3|SPATA22 MULTI-MSMS UPN48_class_I_Rep_3 7 542.2947998046875 2 542.295299 1082.57605 0.43425 0.00023549 -0.40271 -0.00021839 0.031537 1.7103E-05 542.2949751946853 48.253 0.54275 51.887 51.66 52.203 3.6339 62 36 2 0 0 0 0.82752 1 9517 9517 23.148 3.7094 1 123220 + 15877 19368 10191 10197 19442 19442 0.038060294773458736 KEKKKKILRP 10 Unmodified _KEKKKKILRP_ 0 0 0 REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|111|3|sense REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|111|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 423.6247863769531 3 423.290602 1266.84998 -0.49763 -0.00021064 -0.10437 -4.418E-05 -0.60201 -0.00025482 423.29044424026586 12.194 0.28422 12.194 12.079 12.363 0 66 32 4 0 0 0 0.56317 1 35 35 1.5923 0 1 98185 + 15878 29865 10192 10198 19443 19443 0.22722472307259522 KEKKKRKKLEY 11 Unmodified _KEKKKRKKLEY_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENSG00000174197.16,MGA,chr15,+,I13.1,41727407,41729163|38|5.11|3|intron;ENSG00000174197.16,MGA,chr15,+,I13.1,41727407,41729163|38|5.11|1|intron;ENSG00000174197.16,MGA,chr15,+,I16.1,41736699,41739905|67|9.84|4|intron;ENSG00000174197.16,MGA,chr15,+,I13.1,41727407,41729163|38|5.11|2|intron;ENSG00000174197.16,MGA,chr15,+,I16.1,41736699,41739905|67|9.84|5|intron nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS UPN46_class_I_Rep_3 1 493.31195068359375 3 493.311954 1476.91403 0.27194 0.00013415 0.35986 0.00017752 0.63179 0.00031167 493.31211133692443 45.449 0.5677 45.449 45.223 45.79 0 93 55 2 0 0 0 0.65674 2 9208 9208;9255 2.6312 0.31342 1 357030 15879 4669 10193 10199 19444;19445 19444 0.19465207673579243 KEKKKRKKLEY 11 Unmodified _KEKKKRKKLEY_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENSG00000174197.16,MGA,chr15,+,I13.1,41727407,41729163|38|5.11|3|intron;ENSG00000174197.16,MGA,chr15,+,I13.1,41727407,41729163|38|5.11|1|intron;ENSG00000174197.16,MGA,chr15,+,I16.1,41736699,41739905|67|9.84|4|intron;ENSG00000174197.16,MGA,chr15,+,I13.1,41727407,41729163|38|5.11|2|intron;ENSG00000174197.16,MGA,chr15,+,I16.1,41736699,41739905|67|9.84|5|intron nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-SECPEP UPN46_class_I_Rep_3 1 493.31195068359375 3 493.311954 1476.91403 0.27405 0.00013519 0.26582 0.00013113 0.53988 0.00026633 493.3121018498266 44.998 0.41834 44.998 44.815 45.233 0 67 42 2 0 0 0 22.551 1 9101 9101 0.50596 0 1 967220 15880 4669 10193 10199 19446 19446 0.19465207673579243 KEKKLNRL 8 Unmodified _KEKKLNRL_ 0 0 0 ENST00000531877.1_2_11:93428741-93428801:+|nuORF;ENST00000325212.10_2_11:93428741-93429513:+|nuORF ENST00000531877.1_2_11:93428741-93428801:+|nuORF ENST00000531877.1_2_11:93428741-93428801:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 514.8319091796875 2 514.832383 1027.65021 -0.29841 -0.00015363 -0.11274 -5.8041E-05 -0.41115 -0.00021167 514.832227612761 13.683 0.31632 17.071 16.976 17.292 3.388 55 36 2 0 0 0 0.82752 1 382 382 15.847 4.2069 1 61352 15881 6165 10194 10200 19447 19447 0.13749417359508698 KEKLNSRS 8 Unmodified _KEKLNSRS_ 0 0 0 REV__ENSG00000085511|ENST00000392142|MAP3K4 REV__ENSG00000085511|ENST00000392142|MAP3K4 MSMS UPN47_class_I_Rep_1 2 481.3016357421875 2 481.274898 960.535243 NaN NaN NaN NaN NaN NaN NaN 87.186 1 90.823 90.323 91.323 3.6372 0 0 0 0.40659 1 21781 21781 1.8442 0 1 + 15882 17955 10195 10201 19448 19448 0.05339688157721412 KEKNNGGPR 9 Unmodified _KEKNNGGPR_ 0 0 0 REV__ENSG00000163877|ENST00000296215|SNIP1 REV__ENSG00000163877|ENST00000296215|SNIP1 MSMS UPN47_class_I_Rep_3 4 500.271240234375 2 500.270147 998.525741 NaN NaN NaN NaN NaN NaN NaN 20.753 1 24.103 23.603 24.603 3.3496 0 0 0 0.39598 1 2199 2199 1.6526 0.17072 1 + 15883 20015 10196 10202 19449 19449 0.026419198721896464 KEKPFYYKE 9 Unmodified _KEKPFYYKE_ 0 0 0 REV__Charlie1a_dup4190|chr12:50154373-50154695:+|1.1169189202663568|0.0237217862485451|5.56|151.0|22|3|anti-sense REV__Charlie1a_dup4190|chr12:50154373-50154695:+|1.1169189202663568|0.0237217862485451|5.56|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_3 7 616.3240966796875 2 616.321514 1230.62847 NaN NaN NaN NaN NaN NaN NaN 47.875 1 51.508 51.008 52.008 3.6339 0 0 0 0.3967 1 9441 9441 1.4819 0.15237 1 + 15884 17325 10197 10203 19450 19450 0.022385678202681447 KEKPQCWIF 9 Unmodified _KEKPQCWIF_ 0 0 0 REV__MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|14|3|sense REV__MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|14|3|sense MSMS UPN48_class_I_Rep_2 6 589.8056030273438 2 589.804977 1177.5954 NaN NaN NaN NaN NaN NaN NaN 36.622 1 40.324 39.824 40.824 3.7021 0 0 0 0.38916 1 6174 6174 3.2813 0 1 + 15885 31050 10198 10204 19451 19451 0.013706624965607261 KEKQEFLK 8 Unmodified _KEKQEFLK_ 0 0 0 ENST00000583470.1_1_17:30439414-30439573:-|nuORF ENST00000583470.1_1_17:30439414-30439573:-|nuORF ENST00000583470.1_1_17:30439414-30439573:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3030395507812 2 525.303124 1048.5917 0.31931 0.00016774 -0.46153 -0.00024244 -0.14221 -7.4705E-05 525.3027710053738 40.286 0.41628 43.791 43.565 43.982 3.5048 45 32 2 0 0 0 0.82752 1 7231 7231 6.7232 0 1 92875 15886 7570 10199 10205 19452 19452 0.06934315994362805 KEKQEFLK 8 Unmodified _KEKQEFLK_ 0 0 0 ENST00000583470.1_1_17:30439414-30439573:-|nuORF ENST00000583470.1_1_17:30439414-30439573:-|nuORF ENST00000583470.1_1_17:30439414-30439573:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 525.3021240234375 2 525.303124 1048.5917 0.3442 0.00018081 -0.48001 -0.00025215 -0.13581 -7.134E-05 525.3027697531469 39.892 0.47628 43.634 43.396 43.872 3.7413 67 47 2 0 0 0 0.82752 1 7083 7083 6.7232 0 1 118240 15887 7570 10199 10205 19453 19453 0.06934315994362805 KEKQEFLK 8 Unmodified _KEKQEFLK_ 0 0 0 ENST00000583470.1_1_17:30439414-30439573:-|nuORF ENST00000583470.1_1_17:30439414-30439573:-|nuORF ENST00000583470.1_1_17:30439414-30439573:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 525.302490234375 2 525.303124 1048.5917 0.35293 0.0001854 -0.41427 -0.00021762 -0.061336 -3.222E-05 525.3027221101337 39.929 0.55252 43.579 43.258 43.81 3.6509 87 52 2 0 0 0 0.82752 3 7004 7004;7042;7084 6.7232 0 1 85092 15888 7570 10199 10205 19454;19455;19456 19454 0.06934315994362805 KEKTGETYK 9 Unmodified _KEKTGETYK_ 0 0 0 REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|85|3|sense REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|85|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.28759765625 2 542.287671 1082.56079 -0.10018 -5.4324E-05 0.2559 0.00013877 0.15572 8.4446E-05 542.2876998999913 20.571 0.40727 20.571 20.302 20.71 0 65 40 2 0 0 0 0.42249 1 2162 2162 6.7232 0.99131 1 74683 + 15889 24799 10200 10206 19457 19457 0.02281117889469897 KEKVKLLL 8 Unmodified _KEKVKLLL_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense;L1PB1_dup7983|chrX:81310769-81312857:-|1.3835011948509246|0.0086804911090664|7.32|149.0|6|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8365173339844 2 485.836603 969.658653 -0.31046 -0.00015083 0.25619 0.00012447 -0.054266 -2.6364E-05 485.8366383222366 29.554 0.34706 33.312 33.028 33.375 3.7578 32 24 2 0 0 0 0.82752 1 4680 4680 0.69038 0 1 71649 15890 15258 10201 10207 19458 19458 0.1726097127615276 KEKVKLLL 8 Unmodified _KEKVKLLL_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense;L1PB1_dup7983|chrX:81310769-81312857:-|1.3835011948509246|0.0086804911090664|7.32|149.0|6|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense MSMS UPN47_class_I_Rep_1 2 485.8365783691406 2 485.836603 969.658653 NaN NaN NaN NaN NaN NaN NaN 29.755 1 33.513 33.013 34.013 3.7578 0 0 0 0.40625 1 4771 4771 2.3027 0 1 15891 15258 10201 10207 19459 19459 0.1726097127615276 KEKVLKLL 8 Unmodified _KEKVLKLL_ 0 0 0 REV__ENST00000559784.5_1_15:35703087-35834683:-|nuORF REV__ENST00000559784.5_1_15:35703087-35834683:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 485.83642578125 2 485.836603 969.658653 -0.15997 -7.7721E-05 -0.19189 -9.3228E-05 -0.35186 -0.00017095 485.836535324177 29.875 0.81159 33.367 32.992 33.803 3.4923 82 67 2 0 0 0 0.82752 1 4807 4807 2.0598 0 1 66153 + 15892 19086 10202 10208 19460 19460 0.17260971276130022 KELALSSSSKK 11 Unmodified _KELALSSSSKK_ 0 0 0 REV__L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|105|2|sense REV__L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|105|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.343505859375 2 589.342978 1176.6714 0.48757 0.00028734 0.082666 4.8719E-05 0.57023 0.00033606 589.3429008074793 85.914 1.0555 89.286 89.137 90.193 3.3716 274 128 3 0 0 0 0.66277 1 21686 21686 2.086 2.086 1 628760 + 15893 30153 10203 10209 19461 19461 0.09013337877695449 KELCTLYHSTN 11 Unmodified _KELCTLYHSTN_ 0 0 0 Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|29|1|anti-sense Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|29|1|anti-sense Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|29|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 436.77484130859375 3 436.879939 1307.61799 -0.025387 -1.1091E-05 -0.81544 -0.00035625 -0.84083 -0.00036734 436.8792691812848 81.493 0.072639 85.055 84.996 85.069 3.5624 15 9 2 0 0 0 22.551 1 19430 19430 2.2527 1.6259 1 54623 15894 33463 10204 10210 19462 19462 -0.02351782896471377 KELEKWDY 8 Unmodified _KELEKWDY_ 0 0 0 REV__ENST00000427635.6_1_10:69682690-69747802:-|nuORF REV__ENST00000427635.6_1_10:69682690-69747802:-|nuORF MSMS UPN46_class_I_Rep_3 1 555.85986328125 2 555.776939 1109.53933 NaN NaN NaN NaN NaN NaN NaN 43.62 1 43.62 43.12 44.12 0 0 0 0 0.39996 1 8723 8723 7.9102 1.187 1 + 15895 19595 10205 10211 19463 19463 -0.01106267139243755 KELELLHFRL 10 Unmodified _KELELLHFRL_ 0 0 0 REV__ENST00000466811.2_1_2:66668130-66681852:+|nuORF REV__ENST00000466811.2_1_2:66668130-66681852:+|nuORF MSMS UPN48_class_I_Rep_1 5 649.3848266601562 2 649.38498 1296.75541 NaN NaN NaN NaN NaN NaN NaN 78.396 1 81.921 81.421 82.421 3.5246 0 0 0 0.53105 1 18697 18697 2.9952 0 1 + 15896 18287 10206 10212 19464 19464 0.11889913765276106 KELFLKKST 9 Unmodified _KELFLKKST_ 0 0 0 L1MC5a_dup5772|chr5:171989195-171989878:+|1.1360223870413992|0.0144067088169823|6.3|151.0|14|2|sense L1MC5a_dup5772|chr5:171989195-171989878:+|1.1360223870413992|0.0144067088169823|6.3|151.0|14|2|sense L1MC5a_dup5772|chr5:171989195-171989878:+|1.1360223870413992|0.0144067088169823|6.3|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 547.3323974609375 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 94.13 1 97.866 97.366 98.366 3.736 0 0 0 0.38784 1 23395 23395 3.5965 0 1 15897 11757 10207 10213 19465 19465 0.11167462062553568 KELGRVRI 8 Unmodified _KELGRVRI_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|204|2|anti-sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|204|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8118896484375 2 485.811451 969.608348 0.12058 5.858E-05 3.6248 0.0017609 3.7453 0.0018195 485.8117702091249 64.63 0.24058 67.985 67.896 68.137 3.3557 47 22 3 0 0 0 0.82752 1 15363 15363 4.756 0 1 138390 + 15898 23628 10208 10214 19466 19466 0.12232861670997863 KELHAPLT 8 Unmodified _KELHAPLT_ 0 0 0 ENSG00000104549|ENST00000265896|SQLE ENSG00000104549|ENST00000265896|SQLE ENSG00000104549|ENST00000265896|SQLE MULTI-MSMS UPN48_class_I_Rep_1 5 454.76336669921875 2 454.763635 907.512717 0.025154 1.1439E-05 -0.31704 -0.00014418 -0.29188 -0.00013274 454.7634044846299 45.281 0.48884 48.797 48.635 49.124 3.5162 48 35 2 0 0 0 0.82752 1 8686 8686 18.135 0 1 141900 15899 1694 10209 10215 19467 19467 0.05526088760063885 KELHHRIR 8 Unmodified _KELHHRIR_ 0 0 0 REV__HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|34|3|sense REV__HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|34|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.3281860351562 2 544.825424 1087.63629 0.48431 0.00026386 -0.61161 -0.00033322 -0.1273 -6.9355E-05 544.8245329205189 88.585 0.12279 92.323 92.25 92.372 3.7379 20 16 2 0 0 0 0.82752 1 21092 21092 0.69038 0 1 73014 + 15900 23964 10210 10216 19468 19468 0.09598184651053998 KELILKIHFK 10 Unmodified _KELILKIHFK_ 0 0 0 L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|46|3|sense L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|46|3|sense L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|46|3|sense MSMS UPN46_class_I_Rep_3 1 634.907958984375 2 634.908091 1267.80163 NaN NaN NaN NaN NaN NaN NaN 107.84 1 107.84 107.34 108.34 0 0 0 0 0.53105 1 26309 26309 2.9952 1.5133 1 15901 10296 10211 10217 19469 19469 0.17843978667337979 KELILKIHFK 10 Unmodified _KELILKIHFK_ 0 0 0 L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|46|3|sense L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|46|3|sense L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|46|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 634.8781127929688 2 634.908091 1267.80163 0.72744 0.00046186 -0.94407 -0.0005994 -0.21663 -0.00013754 634.9073137496265 108.05 0.40594 108.05 107.88 108.29 0 40 32 3 0 0 0 0.84575 1 26318 26318 9.3831 3.6513 1 7026400 15902 10296 10211 10217 19470 19470 0.17843978667337979 KELIPAPVP 9 Unmodified _KELIPAPVP_ 0 0 0 REV__MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|1|1|sense REV__MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 482.2982177734375 2 482.29731 962.580068 NaN NaN NaN NaN NaN NaN NaN 104.28 1 107.98 107.48 108.48 3.6991 0 0 0 0.37476 1 24674 24674 6.7232 2.3939 1 + 15903 31413 10212 10218 19471 19471 0.09728118971031563 KELIPILLKLP 11 Unmodified _KELIPILLKLP_ 0 0 0 L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|88|3|sense L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|88|3|sense L1PA16_dup568|chr1:176076024-176079647:+|6.006024937526692|0.0850930101996932|6.14|151.0|88|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 638.9317626953125 2 638.933774 1275.853 0.51428 0.00032859 -2.7013 -0.001726 -2.187 -0.0013974 638.9322021243771 108.23 0.15865 111.77 111.7 111.86 3.5382 24 14 2 0 0 0 0.67264 1 26493 26493 1.1933 0.79263 1 2166500 15904 14098 10213 10219 19472 19472 0.22610302641419366 KELKPEKR 8 Unmodified _KELKPEKR_ 0 0 0 REV__L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|3|1|sense REV__L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 514.2985229492188 2 514.316566 1026.61858 0.34628 0.0001781 -2.8473 -0.0014644 -2.501 -0.0012863 514.3163288623605 87.323 0.16373 91.113 91.012 91.176 3.7905 25 19 2 0 0 0 0.72333 1 20700 20700 1.8442 0 1 71663 + 15905 29428 10214 10220 19473 19473 0.10633424605566688 KELKQIYQ 8 Unmodified _KELKQIYQ_ 0 0 0 L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|14|1|sense;L1P1_dup1433|chr7:105360767-105362324:+|3.4095799104971447|0.0294271186903797|6.86|151.0|15|1|sense;L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|82|2|sense;L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|27|3|sense;L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|13|1|sense;L1MB4_dup3449|chr7:75450364-75451884:+|2.071617301683661|0.2986339002213939|2.79|151.0|13|1|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|166|3|sense;L1PA7_dup5664|chr6:136686245-136688432:+|3.814078110182136|0.1234087282726737|4.95|151.0|58|3|sense L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|14|1|sense L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 525.3031616210938 2 525.303124 1048.5917 0.3442 0.00018081 -0.48001 -0.00025215 -0.13581 -7.134E-05 525.3027697531469 39.892 0.47628 43.634 43.396 43.872 3.7413 67 47 2 0 0 0 0.82752 1 7192 7192 2.0598 0 1 118240 15906 10504 10215 10221 19474 19474 0.06934315994340068 KELKQLIRVY 10 Unmodified _KELKQLIRVY_ 0 0 0 REV__Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|1|1|sense REV__Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 645.4011840820312 2 645.40063 1288.78671 0.43731 0.00028224 -0.065655 -4.2374E-05 0.37166 0.00023987 645.400525453946 108.23 0.16965 111.86 111.76 111.93 3.6313 16 12 2 0 0 0 0.53004 1 26177 26177 8.1555 0 1 907630 + 15907 32579 10216 10222 19475 19475 0.15386486799343402 KELKQLIRVY 10 Unmodified _KELKQLIRVY_ 0 0 0 REV__Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|1|1|sense REV__Tigger11a_dup157|chr6:7114728-7115177:-|1.371524260025348|0.0134321709237786|6.67|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 645.40063 1288.78671 0.63463 0.00040959 -1.2432 -0.00080238 -0.6086 -0.00039279 645.3993878959718 108.22 0.13505 111.75 111.66 111.79 3.5333 -0.051833 -0.0011193 NaN 8.1555 18 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1227000 + 15908 32579 10216 10222 0.15386486799343402 KELKQLRKISN 11 Unmodified _KELKQLRKISN_ 0 0 0 L1MA3_dup6447|chr11:66204140-66204859:+|1.4839883318273368|0.0191005781783935|6.28|151.0|9|2|sense L1MA3_dup6447|chr11:66204140-66204859:+|1.4839883318273368|0.0191005781783935|6.28|151.0|9|2|sense L1MA3_dup6447|chr11:66204140-66204859:+|1.4839883318273368|0.0191005781783935|6.28|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.94818115234375 3 452.948904 1355.82488 0.18689 8.465E-05 -0.65987 -0.00029889 -0.47298 -0.00021424 452.9485276053105 101.45 0.87892 105.25 105.13 106.01 3.7942 215 128 3 0 0 0 0.66092 1 25087 25087 2.2527 0.32522 1 904430 15909 9589 10217 10223 19476 19476 0.16120372714044606 KELKSKGK 8 Unmodified _KELKSKGK_ 0 0 0 L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|80|2|sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|80|2|sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|80|2|sense MSMS UPN48_class_I_Rep_3 7 459.2935791015625 2 459.292559 916.570566 NaN NaN NaN NaN NaN NaN NaN 101.3 1 105.11 104.61 105.61 3.8153 0 0 0 0.40404 1 23961 23961 5.2307 0 1 15910 13887 10218 10224 19477 19477 0.10894350685521204 KELKTPQRPI 10 Unmodified _KELKTPQRPI_ 0 0 0 REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|36|2|sense REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|36|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 403.24658203125 3 403.915312 1208.72411 0.096565 3.9004E-05 0.36875 0.00014894 0.46532 0.00018795 403.91541029470574 96.888 0.1705 100.8 100.77 100.94 3.9084 25 22 2 0 0 0 0.84575 1 22987 22987 1.7423 0 1 106470 + 15911 29425 10219 10225 19478 19478 0.12809340731178054 KELKTPQRPI 10 Unmodified _KELKTPQRPI_ 0 0 0 REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|36|2|sense REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|36|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 403.915312 1208.72411 -0.41258 -0.00016665 0.39355 0.00015896 -0.019032 -7.6872E-06 403.91550012316117 97.01 0.028366 100.49 100.47 100.5 3.4791 -0.15368 1.4076E-05 NaN 1.7423 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 48286 + 15912 29425 10219 10225 0.12809340731178054 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 624.3516235351562 2 623.848093 1245.68163 0.49392 0.00030813 2.4843 0.0015498 2.9782 0.0018579 624.3509862383186 107.77 0.10628 111.45 111.39 111.49 3.6783 14 10 2 0 0 0 0.32209 1 25498 25498 13.615 0.5724 1 3930200 15913 4114 10220 10226 19479 19479 0.06861900812259591 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 623.848093 1245.68163 0.55286 0.0003449 1.8656 0.0011638 2.4184 0.0015087 624.3507297614643 107.79 0.23009 111.47 111.38 111.61 3.6724 0.051491 0.00011611 NaN 13.615 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 9506000 15914 4114 10220 10226 0.06861900812259591 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 623.848093 1245.68163 0.63462 0.00039591 1.8021 0.0011242 2.4367 0.0015202 624.3507148063201 107.81 0.29921 111.35 111.24 111.54 3.5345 -0.06655 3.6941E-05 NaN 13.615 43 35 2 NaN NaN NaN NaN 0 NaN NaN 0 7212300 15915 4114 10220 10226 0.06861900812259591 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 623.848093 1245.68163 0.5121 0.00031947 1.8192 0.0011349 2.3313 0.0014544 624.3508289454647 107.8 0.23927 111.34 111.25 111.49 3.5382 -0.076782 5.8284E-05 NaN 13.615 36 28 2 NaN NaN NaN NaN 0 NaN NaN 0 7296100 15916 4114 10220 10226 0.06861900812259591 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 623.848093 1245.68163 0.42658 0.00026612 1.4715 0.00091796 1.898 0.0011841 624.3506219658432 107.79 0.2043 111.43 111.34 111.54 3.6313 0.009986 -0.00037562 NaN 13.615 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 8448400 15917 4114 10220 10226 0.06861900812259591 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 623.848093 1245.68163 0.49392 0.00030813 2.4843 0.0015498 2.9782 0.0018579 624.3509862383186 107.77 0.10628 111.45 111.39 111.49 3.6783 0.033839 0.00088805 NaN 13.615 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3930200 15918 4114 10220 10226 0.06861900812259591 KELLLNTSEVT 11 Unmodified _KELLLNTSEVT_ 0 0 0 ENST00000533453.5_1_6:117824949-117853459:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1 ENST00000533453.5_1_6:117824949-117853459:+|nuORF ENST00000533453.5_1_6:117824949-117853459:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 623.848093 1245.68163 0.59392 0.00037052 1.7342 0.0010819 2.3281 0.0014524 624.3506656471799 107.78 0.12962 111.46 111.4 111.53 3.6813 0.048016 -4.7814E-05 NaN 13.615 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4324700 15919 4114 10220 10226 0.06861900812259591 KELLSVPKAI 10 Unmodified _KELLSVPKAI_ 0 0 0 REV__nc|ENSG00000136717|O00499-3|BIN1 REV__nc|ENSG00000136717|O00499-3|BIN1 MSMS UPN47_class_I_Rep_2 3 549.3379516601562 2 549.350074 1096.6856 NaN NaN NaN NaN NaN NaN NaN 107.65 1 111.19 110.69 111.69 3.5345 0 0 0 0.53105 1 26051 26051 10.8 1.4164 1 + 15920 19197 10221 10227 19480 19480 0.14112035096650288 KELLYLQAK 9 Unmodified _KELLYLQAK_ 0 0 0 REV__nc|ENSG00000171444|P23508|MCC REV__nc|ENSG00000171444|P23508|MCC MSMS UPN48_class_I_Rep_3 7 553.3329467773438 2 553.334424 1104.6543 NaN NaN NaN NaN NaN NaN NaN 87.506 1 91.297 90.797 91.797 3.7905 0 0 0 0.39598 1 20765 20765 1.6526 0 1 + 15921 20405 10222 10228 19481 19481 0.10615462062560255 KELMLVAF 8 Unmodified _KELMLVAF_ 0 0 0 REV__L1M5_dup48466|chr17:47442962-47443742:-|2.521062499182285|0.1669176915898951|3.92|151.0|24|3|sense REV__L1M5_dup48466|chr17:47442962-47443742:-|2.521062499182285|0.1669176915898951|3.92|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 475.7705993652344 2 475.772614 949.530675 NaN NaN NaN NaN NaN NaN NaN 19.319 1 19.319 18.819 19.819 0 0 0 0 0.40404 1 1822 1822 5.2307 0 1 + 15922 24691 10223 10229 19482 19482 0.05389087690571159 KELPIAQAK 9 Unmodified _KELPIAQAK_ 0 0 0 REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|71|3|sense REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|71|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.3033142089844 2 499.305667 996.596781 0.18701 9.3376E-05 -0.52334 -0.00026131 -0.33633 -0.00016793 499.30295452536285 107.58 0.13018 111.21 111.17 111.3 3.6313 35 16 3 0 0 0 0.21527 1 25939 25939 19.257 5.3509 1 2525300 + 15923 29252 10224 10230 19483 19483 0.09834619856985682 KELPRLLHFV 10 Unmodified _KELPRLLHFV_ 0 0 0 REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|133|1|anti-sense REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|133|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3795166015625 2 626.38224 1250.74993 0.49464 0.00030983 -2.7994 -0.0017535 -2.3048 -0.0014437 626.3806486058944 107.54 0.43916 111.22 110.99 111.43 3.6783 91 55 2 0 0 0 0.4965 2 25393 25393;25396 12.241 0 1 8549400 + 15924 28824 10225 10231 19484;19485 19484 0.13458234973427352 KELPRLLHFV 10 Unmodified _KELPRLLHFV_ 0 0 0 REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|133|1|anti-sense REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|133|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.37939453125 2 626.38224 1250.74993 0.59977 0.00037569 -3.0362 -0.0019018 -2.4364 -0.0015261 626.3805211818528 107.53 0.25142 111.21 111.09 111.34 3.6813 61 32 2 0 0 0 0.43106 1 25343 25343 17.113 0 1 5756800 + 15925 28824 10225 10231 19486 19486 0.13458234973427352 KELQKGPFV 9 Unmodified _KELQKGPFV_ 0 0 0 REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF MSMS UPN46_class_I_Rep_3 1 523.3037109375 2 523.305667 1044.59678 NaN NaN NaN NaN NaN NaN NaN 80.971 1 80.971 80.471 81.471 0 0 0 0 0.32573 1 19099 19099 9.3831 3.6513 1 + 15926 22097 10226 10232 19487 19487 0.0762661985700106 KELQRKNQRKN 11 Unmodified _KELQRKNQRKN_ 0 0 0 REV__L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|78|3|sense REV__L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|78|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 481.2825012207031 3 481.283057 1440.82734 0.11945 5.7491E-05 0.86615 0.00041686 0.9856 0.00047435 481.28343241377337 95.386 0.19175 99.003 98.944 99.136 3.6167 39 22 2 0 0 0 0.67462 1 22975 22975 1.0136 0.50762 1 196200 + 15927 29259 10227 10233 19488 19488 0.12456221171669313 KELRKELELQK 11 Unmodified _KELRKELELQK_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-4|ITSN2 MULTI-MSMS UPN48_class_I_Rep_1 5 471.9517517089844 3 471.952314 1412.83511 0.084756 4.0001E-05 -0.7825 -0.0003693 -0.69774 -0.0003293 471.95184247904126 98.862 0.43095 102.47 102.44 102.87 3.6065 95 55 2 0 0 0 0.67356 1 23883 23883 1.1098 0 1 618550 + 15928 21125 10228 10234 19489 19489 0.14520935648579325 KELRLPFA 8 Unmodified _KELRLPFA_ 0 0 0 REV__L1M4_dup18604|chr18:21067986-21069314:-|1.293777787642214|0.0132937593172768|6.6|151.0|6|1|sense REV__L1M4_dup18604|chr18:21067986-21069314:-|1.293777787642214|0.0132937593172768|6.6|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 487.293212890625 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 82.318 1 85.894 85.394 86.394 3.5753 0 0 0 0.40625 1 19655 19655 2.3027 0 1 + 15929 24407 10229 10235 19490 19490 0.08826654548113311 KELSEPFLL 9 Unmodified _KELSEPFLL_ 0 0 0 REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|37|2|anti-sense REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|37|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 538.3057250976562 2 538.305332 1074.59611 0.44711 0.00024068 -0.1437 -7.7353E-05 0.30341 0.00016333 538.3051214276695 79.403 0.61577 82.698 82.431 83.046 3.295 112 55 3 0 0 0 0.39745 1 19866 19866 8.1555 0 1 133870 + 15930 24687 10230 10236 19491 19491 0.06179780417301117 KELSEPFLL 9 Unmodified _KELSEPFLL_ 0 0 0 REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|37|2|anti-sense REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|37|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 538.305332 1074.59611 0.4206 0.00022641 -0.53265 -0.00028673 -0.11205 -6.0318E-05 538.3048634594555 79.272 0.055016 82.717 82.678 82.733 3.4456 -0.018741 -0.00034795 NaN 8.1555 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 33991 + 15931 24687 10230 10236 0.06179780417301117 KELSEPFLL 9 Unmodified _KELSEPFLL_ 0 0 0 REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|37|2|anti-sense REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|37|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 538.305332 1074.59611 0.44251 0.00023821 -0.25682 -0.00013825 0.18569 9.9957E-05 538.3050537987854 79.438 0.53244 82.793 82.467 82.999 3.3554 0.057077 -5.0991E-05 NaN 8.1555 66 53 2 NaN NaN NaN NaN 0 NaN NaN 0 85822 + 15932 24687 10230 10236 0.06179780417301117 KELSRYKKR 9 Unmodified _KELSRYKKR_ 0 0 0 REV__ENSG00000158008|ENST00000374280|EXTL1 REV__ENSG00000158008|ENST00000374280|EXTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 403.2467956542969 3 403.247173 1206.71969 -0.61137 -0.00024653 -0.1594 -6.4276E-05 -0.77077 -0.00031081 403.24701641923775 96.996 0.46313 100.41 100.36 100.82 3.414 104 63 2 0 0 0 0.48846 1 24103 24103 0.96228 0 1 173380 + 15933 19831 10231 10237 19492 19492 0.12459876308253115 KELSRYKKR 9 Unmodified _KELSRYKKR_ 0 0 0 REV__ENSG00000158008|ENST00000374280|EXTL1 REV__ENSG00000158008|ENST00000374280|EXTL1 MULTI-MSMS UPN48_class_I_Rep_2 6 403.2470397949219 3 403.247173 1206.71969 0.082143 3.3124E-05 -0.67437 -0.00027194 -0.59223 -0.00023882 403.24689152690814 96.409 0.097328 100.19 100.12 100.22 3.7804 19 12 2 0 0 0 0.47197 1 22896 22896 2.086 0 1 333860 + 15934 19831 10231 10237 19493 19493 0.12459876308253115 KELSRYKKR 9 Unmodified _KELSRYKKR_ 0 0 0 REV__ENSG00000158008|ENST00000374280|EXTL1 REV__ENSG00000158008|ENST00000374280|EXTL1 MULTI-MSMS UPN48_class_I_Rep_3 7 604.3667602539062 2 604.367121 1206.71969 0.54642 0.00033024 -0.95735 -0.00057859 -0.41093 -0.00024835 604.3664711485862 97.429 0.072342 101.34 101.31 101.38 3.9084 21 9 3 0 0 0 0.48846 1 23096 23096 1.8442 0 1 879560 + 15935 19831 10231 10237 19494 19494 0.12459876308253115 KELSRYKKR 9 Unmodified _KELSRYKKR_ 0 0 0 REV__ENSG00000158008|ENST00000374280|EXTL1 REV__ENSG00000158008|ENST00000374280|EXTL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 604.367121 1206.71969 0.48749 0.00029463 -0.87227 -0.00052717 -0.38478 -0.00023255 604.366640104795 97.477 0.1356 101.26 101.19 101.33 3.779 -0.054017 7.458E-05 NaN 1.8442 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 78261 + 15936 19831 10231 10237 0.12459876308253115 KELTDVQYY 9 Unmodified _KELTDVQYY_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS UPN47_class_I_Rep_2 3 579.787353515625 2 579.787504 1157.56045 0.13681 7.9319E-05 -0.24701 -0.00014322 -0.11021 -6.3897E-05 579.7874830587543 43.471 0.69507 46.829 46.483 47.179 3.358 60 42 2 0 0 0 0.21414 3 8971 8971;8991;9029 19.362 6.3195 1 102930 15937 2740 10232 10238 19495;19496;19497 19495 -0.012023018303807476 KELTDVQYY 9 Unmodified _KELTDVQYY_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS UPN47_class_I_Rep_3 4 579.78759765625 2 579.787504 1157.56045 0.1481 8.5866E-05 -0.19338 -0.00011212 -0.045286 -2.6256E-05 579.7873816484797 43.63 0.63851 46.872 46.503 47.141 3.2419 65 38 2 0 0 0 0.21414 3 9089 9061;9064;9089 19.362 3.2128 1 83843 15938 2740 10232 10238 19498;19499;19500 19500 -0.012023018303807476 KELTINTYI 9 Unmodified _KELTINTYI_ 0 0 0 REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|102|3|anti-sense REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|102|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.8075561523438 2 547.808239 1093.60193 0.0017291 9.472E-07 -0.5587 -0.00030606 -0.55698 -0.00030512 547.8078524200174 36.824 0.68163 40.493 40.2 40.882 3.6692 95 58 2 0 0 0 0.47197 1 7012 7012 3.5965 0 1 148430 + 15939 30949 10233 10239 19501 19501 0.05886878928936312 KELVKQFLF 9 Unmodified _KELVKQFLF_ 0 0 0 ENSG00000172171|ENST00000581216|TEFM;ENST00000580840.1_2_17:29226189-29226666:-|nuORF ENSG00000172171|ENST00000581216|TEFM ENSG00000172171|ENST00000581216|TEFM MSMS UPN47_class_I_Rep_1 2 576.360595703125 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 83.201 1 86.739 86.239 87.239 3.5386 0 0 0 0.39518 1 20802 20802 1.8442 0.19162 1 15940 4564 10234 10240 19502 19502 0.10572052442216773 KELVLFLLKL 10 Unmodified _KELVLFLLKL_ 0 0 0 L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|159|3|sense;L1PA5_dup278|chr1:97397946-97400882:-|2.392390178990216|0.0399319503643138|5.9|151.0|40|2|sense;L1P3_dup1479|chr7:26764850-26770911:-|5.103617207130673|0.0628493276076669|6.34|151.0|90|2|sense;L1PA5_dup74|chr1:45961781-45965617:-|1.2279774679684723|0.0348609811569948|5.14|150.0|14|1|sense L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|159|3|sense L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|159|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 608.908203125 2 608.407392 1214.80023 0.61318 0.00037306 -1.3127 -0.00079867 -0.69955 -0.00042561 608.4066252691462 108.58 0.25555 108.58 108.5 108.75 0 48 28 2 0 0 0 0.56333 1 26561 26561 1.4819 0 1 1828300 15941 13520 10235 10241 19503 19503 0.20142344578584925 KELVLFLLKL 10 Unmodified _KELVLFLLKL_ 0 0 0 L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|159|3|sense;L1PA5_dup278|chr1:97397946-97400882:-|2.392390178990216|0.0399319503643138|5.9|151.0|40|2|sense;L1P3_dup1479|chr7:26764850-26770911:-|5.103617207130673|0.0628493276076669|6.34|151.0|90|2|sense;L1PA5_dup74|chr1:45961781-45965617:-|1.2279774679684723|0.0348609811569948|5.14|150.0|14|1|sense L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|159|3|sense L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|159|3|sense MSMS UPN47_class_I_Rep_3 4 608.4053344726562 2 608.407392 1214.80023 NaN NaN NaN NaN NaN NaN NaN 108.43 1 111.97 111.47 112.47 3.5382 0 0 0 0.53105 1 26541 26541 1.4819 0 1 15942 13520 10235 10241 19504 19504 0.20142344578584925 KELVRWVIKGW 11 Unmodified _KELVRWVIKGW_ 0 0 0 REV__L1MB3_dup11155|chr11:71896909-71897901:+|1.7108861532908628|0.1394350212619907|3.62|151.0|30|3|sense REV__L1MB3_dup11155|chr11:71896909-71897901:+|1.7108861532908628|0.1394350212619907|3.62|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.9519348144531 3 471.950357 1412.82924 0.27316 0.00012892 3.9136 0.001847 4.1867 0.0019759 471.9518102673947 99.052 0.080292 102.54 102.49 102.57 3.4897 15 11 2 0 0 0 0.67356 1 24265 24265 1.1098 0.6038 1 99735 + 15943 25799 10236 10242 19505 19505 0.13933881927573566 KELWIIMKKNL 11 Unmodified _KELWIIMKKNL_ 0 0 0 REV__ENSG00000106771|ENST00000374586|TMEM245 REV__ENSG00000106771|ENST00000374586|TMEM245 MSMS UPN47_class_I_Rep_3 4 472.6176452636719 3 472.619619 1414.83703 NaN NaN NaN NaN NaN NaN NaN 93.716 1 97.121 96.621 97.621 3.4052 0 0 0 0.38417 1 23349 23349 0.36667 0.22678 1 + 15944 18340 10237 10243 19506 19506 0.14620273132868533 KELWLYHTA 9 Unmodified _KELWLYHTA_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS UPN48_class_I_Rep_3 7 580.810791015625 2 580.808574 1159.60259 0.40914 0.00023763 0.10627 6.1722E-05 0.51541 0.00029936 580.8085615316594 45.428 1.505 49.065 48.486 49.991 3.6369 252 103 3 0 0 0 0.46869 1 8917 8917 3.9444 0.3479 1 870350 15945 2987 10238 10244 19507 19507 0.029177183686670105 KELWRRRA 8 Unmodified _KELWRRRA_ 0 0 0 REV__L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|27|2|sense REV__L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.8314208984375 2 557.833249 1113.65194 -0.40033 -0.00022332 -1.3886 -0.00077462 -1.789 -0.00099794 557.8322405457914 15.9 0.35666 19.266 19.138 19.495 3.3659 46 41 2 0 0 0 0.82752 1 929 929 0.69038 0.088878 1 24952 + 15946 28534 10239 10245 19508 19508 0.099664711681271 KELYRRRFPRK 11 Unmodified _KELYRRRFPRK_ 0 0 0 ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 516.3095703125 3 516.979309 1547.9161 0.35387 0.00018294 -0.17653 -9.1263E-05 0.17734 9.168E-05 517.3137070243956 96.895 0.097786 100.8 100.77 100.86 3.9084 16 12 2 0 0 0 22.551 1 22973 22973 0.36667 0.27183 1 96665 15947 2721 10240 10246 19509 19509 0.1640568120201351 KEMDDLTAY 9 Unmodified _KEMDDLTAY_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS UPN46_class_I_Rep_3 1 543.7117309570312 2 543.244615 1084.47468 0.31149 0.00016921 -0.069694 -3.7861E-05 0.24179 0.00013135 543.2447370827384 64.788 0.45712 64.788 64.605 65.063 0 70 44 2 0 0 0 0.32682 1 14555 14555 12.241 0 1 158590 + 15948 20043 10241 10247 19510 19510 -0.06418210007564085 KENDLYPPPY 10 Unmodified _KENDLYPPPY_ 0 0 0 REV__ENSG00000178562|ENST00000324106|CD28 REV__ENSG00000178562|ENST00000324106|CD28 MSMS UPN47_class_I_Rep_1 2 618.2989501953125 2 618.300778 1234.587 NaN NaN NaN NaN NaN NaN NaN 51.619 1 55.212 54.712 55.712 3.5932 0 0 0 0.53105 1 11422 11422 3.2813 0 1 + 15949 20655 10242 10248 19511 19511 -0.020906129390596107 KENEQYIKRRK 11 Unmodified _KENEQYIKRRK_ 0 0 0 REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|41|1|sense REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|41|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.95098876953125 3 497.951196 1490.83176 0.3548 0.00017667 -0.35101 -0.00017478 0.0037887 1.8866E-06 497.95101281816784 21.087 0.61903 24.735 24.285 24.904 3.648 88 69 2 0 0 0 0.68024 2 1842 1842;1882 0.50596 0 1 95095 + 15950 29052 10243 10249 19512;19513 19512 0.10597685594575523 KENGGKFSF 9 Unmodified _KENGGKFSF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-SECPEP UPN47_class_I_Rep_1 2 507.25567626953125 2 507.256174 1012.49779 -0.2393 -0.00012139 -0.17134 -8.6915E-05 -0.41065 -0.0002083 507.255948429772 26.53 0.75957 30.292 30.086 30.846 3.7624 129 68 3 0 0 0 0.12026 1 3795 3795 8.1555 0.8663 1 135730 15951 1621 10244 10250 19514 19514 -0.007954031079066226 KENGGKFSF 9 Unmodified _KENGGKFSF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-SECPEP UPN47_class_I_Rep_3 4 507.25567626953125 2 507.256174 1012.49779 -0.41828 -0.00021218 -0.042472 -2.1544E-05 -0.46076 -0.00023372 507.25606222797484 27.035 1.0758 30.378 30.001 31.077 3.3422 139 92 2 0 0 0 0.12086 1 4051 4051 7.609 1.4032 1 117850 15952 1621 10244 10250 19515 19515 -0.007954031079066226 KENGGKFSF 9 Unmodified _KENGGKFSF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH UPN47_class_I_Rep_2 3 2 507.256174 1012.49779 -0.23671 -0.00012007 -0.20577 -0.00010438 -0.44248 -0.00022445 507.2559550693885 26.785 0.96908 30.284 29.931 30.9 3.4986 -0.034157 -5.6238E-05 NaN 8.1555 128 89 2 NaN NaN NaN NaN 0 NaN NaN 0 123680 15953 1621 10244 10250 -0.007954031079066226 KENLKEHL 8 Unmodified _KENLKEHL_ 0 0 0 ENST00000382952.7_2_4:1205601-1205772:-|nuORF ENST00000382952.7_2_4:1205601-1205772:-|nuORF ENST00000382952.7_2_4:1205601-1205772:-|nuORF MSMS UPN47_class_I_Rep_1 2 505.78680419921875 2 505.785099 1009.55564 NaN NaN NaN NaN NaN NaN NaN 57.254 1 60.711 60.211 61.211 3.4572 0 0 0 0.3978 1 13136 13136 8.7454 0 1 15954 6503 10245 10251 19516 19516 0.05124858817509903 KENNKRPH 8 Unmodified _KENNKRPH_ 0 0 0 L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|16|2|sense L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|16|2|sense L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 512.2815551757812 2 511.778139 1021.54173 0.29171 0.00014929 2.1804 0.0011159 2.4722 0.0012652 511.77943288835326 32.796 0.3702 36.323 36.085 36.456 3.5266 54 39 2 0 0 0 0.82752 1 5046 5046 8.5933 2.3875 1 84035 15955 10825 10246 10252 19517 19517 0.031816261090853004 KENQCTKI 8 Unmodified _KENQCTKI_ 0 0 0 L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|3|1|sense L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|3|1|sense L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 482.2506408691406 2 482.250034 962.485516 NaN NaN NaN NaN NaN NaN NaN 61.341 1 64.82 64.32 65.32 3.4785 0 0 0 0.40472 1 13619 13619 4.3292 0 1 15956 13815 10247 10253 19518 19518 0.0027723715739966792 KENQEPLRSL 10 Unmodified _KENQEPLRSL_ 0 0 0 ENSG00000132688|ENST00000368223|NES ENSG00000132688|ENST00000368223|NES ENSG00000132688|ENST00000368223|NES MULTI-MSMS UPN47_class_I_Rep_3 4 405.22186279296875 3 405.222693 1212.64625 -0.76501 -0.00031 -0.36465 -0.00014776 -1.1297 -0.00045776 405.22258730993633 47.601 0.7495 50.841 50.215 50.964 3.2405 129 57 3 0 0 0 0.56118 1 10147 10147 1.4551 1.4551 1 417900 15957 2771 10248 10254 19519 19519 0.04843283075138061 KENQEPLRSL 10 Unmodified _KENQEPLRSL_ 0 0 0 ENSG00000132688|ENST00000368223|NES ENSG00000132688|ENST00000368223|NES ENSG00000132688|ENST00000368223|NES MULTI-MSMS UPN47_class_I_Rep_3 4 405.22186279296875 3 405.222693 1212.64625 -0.74127 -0.00030038 -0.55685 -0.00022565 -1.2981 -0.00052603 405.2225068940285 47.763 0.93592 51.003 50.95 51.886 3.2405 121 67 3 0 0 0 0.56118 1 10552 10552 1.4551 1.4551 1 396850 15958 2771 10248 10254 19520 19520 0.04843283075138061 KENSLITQF 9 Unmodified _KENSLITQF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_1 2 540.2902221679688 2 540.290214 1078.56587 0.22233 0.00012012 -0.32137 -0.00017363 -0.099037 -5.3509E-05 540.2900272356416 48.694 0.93337 52.376 51.937 52.87 3.6819 165 61 4 0 0 0 0.0067715 5 10525 10485;10525;10565;10606;10647 73.196 15.474 1 519660 15959 1621 10249 10255 19521;19522;19523;19524;19525 19522 0.029734217520854145 KENSLITQF 9 Unmodified _KENSLITQF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_2 3 540.2901611328125 2 540.290214 1078.56587 0.34909 0.00018861 -0.36657 -0.00019805 -0.01748 -9.4443E-06 540.2900305839981 49.073 1.0943 52.419 51.91 53.004 3.3465 169 68 4 0 0 0 0.023676 5 10665 10623;10665;10704;10744;10782 61.09 7.6859 1 528720 15960 1621 10249 10255 19526;19527;19528;19529;19530 19527 0.029734217520854145 KENSLITQF 9 Unmodified _KENSLITQF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS UPN47_class_I_Rep_3 4 540.2900390625 2 540.290214 1078.56587 0.42325 0.00022868 -0.2702 -0.00014599 0.15305 8.2692E-05 540.2899926219161 49.228 1.1041 52.462 51.923 53.027 3.2345 138 65 3 0 0 0 0.016816 2 10762 10762;10800 65.474 7.7517 1 521880 15961 1621 10249 10255 19531;19532 19531 0.029734217520854145 KENVVLIIY 9 Unmodified _KENVVLIIY_ 0 0 0 L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|98|3|sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|98|3|sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|98|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 545.8290405273438 2 545.828975 1089.6434 0.48906 0.00026694 -0.19287 -0.00010527 0.29619 0.00016167 545.8287451531745 53.819 1.1727 57.143 56.732 57.905 3.3246 145 71 3 0 0 0 0.48846 1 12300 12300 1.8442 0.36234 1 356020 15962 13963 10250 10256 19533 19533 0.10216059688309542 KEPEIKKRM 9 Unmodified _KEPEIKKRM_ 0 0 0 REV__nc|ENSG00000138709|Q659C4-4|LARP1B REV__nc|ENSG00000138709|Q659C4-4|LARP1B MSMS UPN46_class_I_Rep_3 1 579.8365478515625 2 579.836808 1157.65906 NaN NaN NaN NaN NaN NaN NaN 94.124 1 94.124 93.624 94.624 0 0 0 0 0.4007 1 22830 22830 0.52476 0 1 + 15963 19286 10251 10257 19534 19534 0.08654022933660599 KEPRHAPVS 9 Unmodified _KEPRHAPVS_ 0 0 0 ENST00000302017.3_1_7:149462430-149462847:-|nuORF ENST00000302017.3_1_7:149462430-149462847:-|nuORF ENST00000302017.3_1_7:149462430-149462847:-|nuORF MSMS UPN47_class_I_Rep_2 3 510.7812194824219 2 510.78289 1019.55123 NaN NaN NaN NaN NaN NaN NaN 52.106 1 55.439 54.939 55.939 3.3332 0 0 0 0.38784 1 11599 11599 3.5965 0.60125 1 15964 6077 10252 10258 19535 19535 0.04223394394614388 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 614.8302612304688 2 614.830234 1227.64592 0.38759 0.0002383 -0.073539 -4.5214E-05 0.31405 0.00019309 614.8301013563266 66.039 0.70915 69.397 69.119 69.828 3.3576 77 47 2 0 0 0 0.33748 1 15830 15830 12.175 2.0242 1 277480 15965 12448 10253 10259 19536 19536 0.04119863355299458 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 614.83056640625 2 614.830234 1227.64592 0.37289 0.00022927 0.11844 7.2818E-05 0.49133 0.00030208 614.83024047167 66.305 0.63438 69.564 69.315 69.949 3.2588 53 40 2 0 0 0 0.45168 1 15879 15879 8.9762 1.3673 1 129750 15966 12448 10253 10259 19537 19537 0.04119863355299458 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 614.830322265625 2 614.830234 1227.64592 0.4427 0.00027219 -0.069324 -4.2622E-05 0.37338 0.00022956 615.3316882847215 66.352 0.55963 69.537 69.222 69.782 3.1853 71 42 2 0 0 0 0.33002 2 15948 15948;16034 12.873 4.7171 1 171500 15967 12448 10253 10259 19538;19539 19538 0.04119863355299458 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 614.8289184570312 2 614.830234 1227.64592 0.50787 0.00031226 -0.44198 -0.00027174 0.065899 4.0516E-05 614.8297554835821 66.234 0.68383 69.686 69.454 70.138 3.4516 83 45 2 0 0 0 0.31898 1 15114 15114 30.703 13.261 1 331150 15968 12448 10253 10259 19540 19540 0.04119863355299458 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 614.8300170898438 2 614.830234 1227.64592 0.51391 0.00031597 -0.55731 -0.00034265 -0.043398 -2.6683E-05 614.829609877064 66.16 0.67933 69.647 69.344 70.023 3.4866 107 49 3 0 0 0 0.28412 1 15060 15060 21.59 8.7175 1 414360 15969 12448 10253 10259 19541 19541 0.04119863355299458 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 615.3314208984375 2 614.830234 1227.64592 0.51391 0.00031597 -0.55731 -0.00034265 -0.043398 -2.6683E-05 614.829609877064 66.16 0.67933 69.647 69.344 70.023 3.4866 107 49 3 0 0 0 22.551 1 15129 15129 16.566 0.82726 1 414360 15970 12448 10253 10259 19542 19542 0.04119863355299458 KEPSEEAGRII 11 Unmodified _KEPSEEAGRII_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|58|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 614.830234 1227.64592 0.50787 0.00031226 -0.44198 -0.00027174 0.065899 4.0516E-05 614.8297554835821 66.234 0.68383 69.686 69.454 70.138 3.4516 0.12644 -0.00014529 NaN 21.59 83 45 2 NaN NaN NaN NaN 0 NaN NaN 0 331150 15971 12448 10253 10259 0.04119863355299458 KEPWNRKR 8 Unmodified _KEPWNRKR_ 0 0 0 nc|ENSG00000173041|Q8NEM1-2|ZNF680;ENSG00000173041|ENST00000309683|ZNF680 nc|ENSG00000173041|Q8NEM1-2|ZNF680 nc|ENSG00000173041|Q8NEM1-2|ZNF680 MSMS UPN47_class_I_Rep_1 2 557.3198852539062 2 557.317432 1112.62031 NaN NaN NaN NaN NaN NaN NaN 99.015 1 102.81 102.31 103.31 3.7926 0 0 0 0.40753 1 24497 24497 0.6015 0 1 15972 4606 10254 10260 19543 19543 0.06850478414162353 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|5|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|1|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|11|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|10|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_3 7 593.8111572265625 2 593.810782 1185.60701 0.56819 0.0003374 0.22671 0.00013462 0.7949 0.00047202 593.8107873004087 75.091 0.17522 78.656 78.553 78.729 3.5659 52 19 4 0 0 0 0.0061372 1 17625 17625 75.761 23.492 1 2483400 15973 5298 10255 10261 19544 19544 0.02163182791559848 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|5|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|1|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|11|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|10|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_3 7 593.81103515625 2 593.810782 1185.60701 0.56695 0.00033666 -0.21227 -0.00012605 0.35468 0.00021061 593.8104384168394 75.602 0.47549 79.168 78.978 79.453 3.5659 128 49 3 0 0 0 0.19147 1 17771 17771 21.537 1.1224 1 1003100 15974 5298 10255 10261 19545 19545 0.02163182791559848 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|5|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|1|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|11|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|10|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MATCH UPN48_class_I_Rep_1 5 2 593.810782 1185.60701 0.44689 0.00026537 0.10772 6.3965E-05 0.55461 0.00032933 593.8107514305093 75.734 0.33288 79.233 79.147 79.48 3.4996 0.027494 0.00019129 NaN 21.537 75 34 3 NaN NaN NaN NaN 0 NaN NaN 0 466700 15975 5298 10255 10261 0.02163182791559848 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|5|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|1|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|11|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|10|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MATCH UPN48_class_I_Rep_1 5 2 593.810782 1185.60701 0.44817 0.00026613 0.76693 0.00045541 1.2151 0.00072154 593.8111754231385 75.116 0.15813 78.606 78.524 78.682 3.49 -0.02531 0.00055491 NaN 75.761 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 341190 15976 5298 10255 10261 0.02163182791559848 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|5|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|1|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|11|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|10|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MATCH UPN48_class_I_Rep_2 6 2 593.810782 1185.60701 0.47776 0.0002837 0.46495 0.00027609 0.94271 0.00055979 593.811361116505 75.616 0.07209 79.217 79.17 79.242 3.6011 0.010786 0.00061555 NaN 21.537 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 46263 15977 5298 10255 10261 0.02163182791559848 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|5|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|1|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|11|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|10|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 593.810782 1185.60701 0.56695 0.00033666 -0.21227 -0.00012605 0.35468 0.00021061 593.8104384168394 75.602 0.47549 79.168 78.978 79.453 3.5659 -0.038279 -0.00018874 NaN 21.537 128 49 3 NaN NaN NaN NaN 0 NaN NaN 0 1003100 15978 5298 10255 10261 0.02163182791559848 KEQEKFGKV 9 Unmodified _KEQEKFGKV_ 0 0 0 ENSG00000147488|ENST00000689386|ST18 ENSG00000147488|ENST00000689386|ST18 ENSG00000147488|ENST00000689386|ST18 MULTI-MSMS UPN47_class_I_Rep_1 2 546.806884765625 2 546.806031 1091.59751 -0.023807 -1.3018E-05 -0.02737 -1.4966E-05 -0.051177 -2.7984E-05 546.80589550695 29.413 0.64069 33.171 32.746 33.387 3.7578 68 51 2 0 0 0 0.46869 1 4627 4627 3.9444 0.66309 1 112420 15979 3478 10256 10262 19546 19546 0.05537414506034111 KEQESKKGF 9 Unmodified _KEQESKKGF_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS UPN47_class_I_Rep_3 4 540.7872924804688 2 540.787838 1079.56112 -0.45961 -0.00024855 -0.48096 -0.0002601 -0.94056 -0.00050865 540.787538715398 12.735 0.3428 16.109 16.001 16.344 3.3734 89 39 3 0 0 0 0.11355 2 151 123;151 31.268 9.7314 1 141110 15980 884 10257 10263 19547;19548 19548 0.024525376093379236 KEQWCVWF 8 Unmodified _KEQWCVWF_ 0 0 0 REV__L1MEc_dup11828|chr10:43150265-43152011:-|2.4334350034558656|0.0817130060227917|4.9|151.0|99|2|anti-sense REV__L1MEc_dup11828|chr10:43150265-43152011:-|2.4334350034558656|0.0817130060227917|4.9|151.0|99|2|anti-sense MSMS UPN48_class_I_Rep_3 7 563.2630004882812 2 563.262945 1124.51134 NaN NaN NaN NaN NaN NaN NaN 118.86 1 122.45 121.95 122.95 3.5847 0 0 0 0.40738 1 28261 28261 0.79363 0 1 + 15981 28363 10258 10264 19549 19549 -0.04593868600318274 KEQWQEQI 8 Unmodified _KEQWQEQI_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_2 3 544.7716064453125 2 544.772188 1087.52982 0.016604 9.0451E-06 -0.11051 -6.0201E-05 -0.093903 -5.1156E-05 544.7720455164016 19.054 1.4466 22.444 21.981 23.427 3.3898 356 151 3 0 0 0 0.82752 1 1975 1975 1.8442 0.19162 1 267300 15982 1187 10259 10265 19550 19550 -0.0104403542475211 KERELEITK 9 Unmodified _KERELEITK_ 0 0 0 L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|45|3|sense L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|45|3|sense L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|45|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.3295288085938 2 573.32987 1144.64519 0.40723 0.00023348 -0.15268 -8.7534E-05 0.25455 0.00014594 573.3295611011903 89.519 0.48203 93.144 93.084 93.566 3.6255 77 53 2 0 0 0 0.49187 1 21516 21516 1.4819 0 1 283130 15983 11789 10260 10266 19551 19551 0.07865068706200873 KEREPVRL 8 Unmodified _KEREPVRL_ 0 0 0 REV__L1MEc_dup8980|chr8:31060877-31062299:-|1.2394854934858186|0.0736133059810515|4.07|151.0|51|3|sense REV__L1MEc_dup8980|chr8:31060877-31062299:-|1.2394854934858186|0.0736133059810515|4.07|151.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.8125 2 513.806365 1025.59818 0.26612 0.00013673 2.337 0.0012008 2.6032 0.0013375 513.8067410818514 62.035 0.55691 65.403 65.126 65.683 3.3681 75 41 3 0 0 0 0.82752 1 14610 14610 4.3292 0 1 138930 + 15984 28495 10261 10267 19552 19552 0.08640253945759468 KERISLTLVLN 11 Unmodified _KERISLTLVLN_ 0 0 0 REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|26|2|sense REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|26|2|sense MSMS UPN48_class_I_Rep_3 7 643.059814453125 2 643.395544 1284.77654 NaN NaN NaN NaN NaN NaN NaN 95.999 1 99.908 99.408 100.41 3.9084 0 0 0 0.38417 1 22751 22751 1.0715 0.10919 1 + 15985 26554 10262 10268 19553 19553 0.14553879074151155 KERKAFKTIE 10 Unmodified _KERKAFKTIE_ 0 0 0 nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A MULTI-MSMS UPN48_class_I_Rep_3 7 625.3661499023438 2 625.366787 1248.71902 0.60808 0.00038027 -1.0379 -0.00064904 -0.42977 -0.00026876 625.3659123833414 91.277 0.71165 95.14 94.802 95.514 3.8634 271 104 3 0 0 0 0.56118 1 21722 21722 2.9952 1.151 1 15856000 15986 1026 10263 10269 19554 19554 0.10461036868582596 KERSILLK 8 Unmodified _KERSILLK_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|49|2|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|49|2|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|49|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.82135009765625 2 493.821484 985.628415 -0.30092 -0.0001486 0.79887 0.0003945 0.49795 0.0002459 493.8216073580803 12.098 0.19831 12.098 12.007 12.205 0 28 22 2 0 0 0 0.82752 1 48 48 0.79363 0 1 32490 15987 9456 10264 10270 19555 19555 0.13502612610955111 KERVIGFF 8 Unmodified _KERVIGFF_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|145|1|anti-sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|145|1|anti-sense MSMS UPN48_class_I_Rep_2 6 498.2879943847656 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 22.384 1 26.03 25.53 26.53 3.6459 0 0 0 0.40738 1 2277 2277 0.79363 0 1 + 15988 25387 10265 10271 19556 19556 0.06250368031089693 KERYLQKF 8 Unmodified _KERYLQKF_ 0 0 0 REV__L1MA2_dup5532|chr11:78334125-78336031:-|2.7920563860714327|0.0959483368068011|4.86|151.0|49|3|sense REV__L1MA2_dup5532|chr11:78334125-78336031:-|2.7920563860714327|0.0959483368068011|4.86|151.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.3163452148438 2 556.316566 1110.61858 -0.098586 -5.4845E-05 -0.24182 -0.00013453 -0.34041 -0.00018938 556.316347904891 15.451 0.40023 18.947 18.857 19.257 3.4968 69 45 2 0 0 0 0.82752 1 807 807 10.824 0 1 71477 + 15989 24893 10266 10272 19557 19557 0.0676942460556802 KESAFCFI 8 Unmodified _KESAFCFI_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|198|1|anti-sense;L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|219|2|anti-sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|198|1|anti-sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|198|1|anti-sense MSMS UPN48_class_I_Rep_2 6 472.7301330566406 2 472.730946 943.447339 NaN NaN NaN NaN NaN NaN NaN 98.355 1 102.13 101.63 102.63 3.7707 0 0 0 0.3903 1 23365 23365 11.64 2.2929 1 15990 15114 10267 10273 19558 19558 -0.0266464875727479 KESEVFYEL 9 Unmodified _KESEVFYEL_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS UPN48_class_I_Rep_1 5 572.282470703125 2 572.282054 1142.54956 0.44636 0.00025544 0.02175 1.2447E-05 0.46811 0.00026789 572.2820933037752 54.614 0.72989 58.129 57.834 58.564 3.5143 119 50 3 0 0 0 0.079935 3 11573 11532;11573;11614 38.615 14.594 1 354280 15991 1526 10268 10274 19559;19560;19561 19560 -0.016017042046541974 KESEVFYEL 9 Unmodified _KESEVFYEL_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS UPN48_class_I_Rep_2 6 572.2828979492188 2 572.282054 1142.54956 0.58725 0.00033607 -0.2166 -0.00012395 0.37066 0.00021212 572.2818830174788 54.544 0.67119 58.126 57.896 58.567 3.5817 99 43 3 0 0 0 0.12795 4 11505 11483;11505;11523;11562 28.495 10.348 1 314040 15992 1526 10268 10274 19562;19563;19564;19565 19563 -0.016017042046541974 KESEVFYEL 9 Unmodified _KESEVFYEL_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS UPN48_class_I_Rep_3 7 572.2823486328125 2 572.282054 1142.54956 0.32929 0.00018845 0.12105 6.9272E-05 0.45033 0.00025772 572.2821540246167 54.482 0.6844 58.052 57.797 58.481 3.5694 99 45 3 0 0 0 0.033731 3 11461 11420;11461;11497 55.503 26.421 1 370960 15993 1526 10268 10274 19566;19567;19568 19567 -0.016017042046541974 KESEVFYEL 9 Unmodified _KESEVFYEL_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 572.282054 1142.54956 0.58725 0.00033607 -0.2166 -0.00012395 0.37066 0.00021212 572.2818830174788 54.544 0.67119 58.126 57.896 58.567 3.5817 0.023668 -0.00024224 NaN 55.503 99 43 3 NaN NaN NaN NaN 0 NaN NaN 0 314040 15994 1526 10268 10274 -0.016017042046541974 KESKINQVF 9 Unmodified _KESKINQVF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_3 4 546.8052368164062 2 546.806031 1091.59751 -0.19928 -0.00010897 0.2309 0.00012626 0.031617 1.7288E-05 546.8061010240849 29.854 0.73911 33.178 32.741 33.48 3.3235 92 62 2 0 0 0 0.37599 1 4854 4854 9.3831 2.0939 1 78958 15995 5749 10269 10275 19569 19569 0.05537414506034111 KESNFLLTV 9 Unmodified _KESNFLLTV_ 0 0 0 REV__L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|197|3|anti-sense REV__L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|197|3|anti-sense MSMS UPN48_class_I_Rep_3 7 525.7943115234375 2 525.795132 1049.57571 NaN NaN NaN NaN NaN NaN NaN 30.375 1 34.09 33.59 34.59 3.7146 0 0 0 0.34878 1 4374 4374 8.1555 0 1 + 15996 26983 10270 10276 19570 19570 0.05290609757457787 KESPLLFKF 9 Unmodified _KESPLLFKF_ 0 0 0 ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN47_class_I_Rep_1 2 554.8234252929688 2 554.823692 1107.63283 0.3789 0.00021022 -0.27912 -0.00015486 0.099779 5.536E-05 554.8234097669018 55.981 0.98619 59.46 59.109 60.096 3.4785 95 55 2 0 0 0 0.17979 4 12724 12724;12767;12816;12862 22.658 7.4096 1 160690 15997 3458 10271 10277 19571;19572;19573;19574 19571 0.0833207703383323 KESPLLFKF 9 Unmodified _KESPLLFKF_ 0 0 0 ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN47_class_I_Rep_2 3 554.82373046875 2 554.823692 1107.63283 0.51781 0.00028729 -0.56747 -0.00031484 -0.049658 -2.7552E-05 554.8232750553478 56.334 0.73506 59.634 59.318 60.053 3.3009 62 43 2 0 0 0 0.2924 3 12865 12865;12908;12961 14.405 2.9107 1 139320 15998 3458 10271 10277 19575;19576;19577 19575 0.0833207703383323 KESPLLFKF 9 Unmodified _KESPLLFKF_ 0 0 0 ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN47_class_I_Rep_3 4 554.8223876953125 2 554.823692 1107.63283 0.38838 0.00021548 -0.62457 -0.00034653 -0.23619 -0.00013104 554.8231841506561 56.666 0.5751 59.838 59.461 60.036 3.1721 61 34 2 0 0 0 0.21414 2 13052 13001;13052 19.362 3.2128 1 130790 15999 3458 10271 10277 19578;19579 19579 0.0833207703383323 KESPNFESY 9 Unmodified _KESPNFESY_ 0 0 0 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 MSMS UPN46_class_I_Rep_3 1 550.748779296875 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 63.373 1 63.373 62.873 63.873 0 0 0 0 0.38478 1 14227 14227 4.3292 0 1 16000 2840 10272 10278 19580 19580 -0.06355734415592451 KESTLHLVL 9 Unmodified _KESTLHLVL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 520.3109130859375 2 520.310949 1038.60735 -0.0067802 -3.5278E-06 -0.212 -0.00011031 -0.21878 -0.00011383 520.3109107224935 44.489 1.6959 48.184 47.711 49.407 3.6951 391 107 5 0 0 0 9.6791E-06 4 9247 9206;9247;9286;9333 160.52 78.903 1 6663800 16001 3335 10273 10279 19581;19582;19583;19584 19582 0.08958602511415847 KESTLHLVL 9 Unmodified _KESTLHLVL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 520.3109130859375 2 520.310949 1038.60735 -0.1856 -9.657E-05 0.056056 2.9166E-05 -0.12955 -6.7404E-05 520.3109835632537 44.914 2.2429 48.269 47.775 50.018 3.3555 342 144 4 0 0 0 0.0047521 3 9431 9388;9431;9474 147.06 75.926 1 4450700 16002 3335 10273 10279 19585;19586;19587 19586 0.08958602511415847 KESTLHLVL 9 Unmodified _KESTLHLVL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 520.3109741210938 2 520.310949 1038.60735 0.10336 5.3778E-05 -0.12973 -6.75E-05 -0.026374 -1.3723E-05 520.3108913169156 45.147 2.1948 48.391 47.786 49.981 3.2441 410 137 4 0 0 0 0.0047521 4 9576 9488;9530;9576;9616 147.06 75.926 1 5965700 16003 3335 10273 10279 19588;19589;19590;19591 19590 0.08958602511415847 KESVPLVH 8 Unmodified _KESVPLVH_ 0 0 0 REV__L1MEd_dup20948|chr21:43963022-43963428:+|1.00307612920423|0.3970122596092187|1.34|149.0|21|3|anti-sense REV__L1MEd_dup20948|chr21:43963022-43963428:+|1.00307612920423|0.3970122596092187|1.34|149.0|21|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 454.7632141113281 2 454.763635 907.512717 0.080983 3.6828E-05 0.080315 3.6524E-05 0.1613 7.3352E-05 454.76343204860814 44.995 0.39147 48.756 48.445 48.836 3.7617 34 28 2 0 0 0 0.82752 1 8646 8646 28.487 0 1 158310 + 16004 28562 10274 10280 19592 19592 0.05526088760097991 KETADFKVY 9 Unmodified _KETADFKVY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MSMS UPN47_class_I_Rep_1 2 550.7852783203125 2 550.784764 1099.55498 NaN NaN NaN NaN NaN NaN NaN 32.785 1 36.498 35.998 36.998 3.7131 0 0 0 0.34878 1 5687 5687 8.1555 1.0538 1 16005 5336 10275 10281 19593 19593 0.009180193778320245 KETADFKVY 9 Unmodified _KETADFKVY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MSMS UPN47_class_I_Rep_3 4 550.7847290039062 2 550.784764 1099.55498 NaN NaN NaN NaN NaN NaN NaN 33.27 1 36.544 36.044 37.044 3.2748 0 0 0 0.34878 1 5909 5909 8.1555 1.4324 1 16006 5336 10275 10281 19594 19594 0.009180193778320245 KETLHPLA 8 Unmodified _KETLHPLA_ 0 0 0 L1MB8_dup7198|chr8:55949752-55950323:-|2.9226583778767394|0.1847075352238398|3.98|151.0|38|3|anti-sense;L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|48|2|anti-sense;L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|38|3|anti-sense L1MB8_dup7198|chr8:55949752-55950323:-|2.9226583778767394|0.1847075352238398|3.98|151.0|38|3|anti-sense L1MB8_dup7198|chr8:55949752-55950323:-|2.9226583778767394|0.1847075352238398|3.98|151.0|38|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.76336669921875 2 454.763635 907.512717 -0.22863 -0.00010397 0.39867 0.0001813 0.17004 7.7329E-05 454.76374739085526 44.497 0.63468 48.192 47.856 48.491 3.6951 67 45 2 0 0 0 0.82752 1 9196 9196 7.9102 0 1 108820 16007 10798 10276 10282 19595 19595 0.05526088760075254 KETPHLLA 8 Unmodified _KETPHLLA_ 0 0 0 L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|56|1|anti-sense L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|56|1|anti-sense L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|56|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 454.76373291015625 2 454.763635 907.512717 -0.34643 -0.00015754 0.42501 0.00019328 0.078584 3.5737E-05 454.7637611743721 44.952 0.69456 48.307 48.04 48.734 3.3556 69 40 2 0 0 0 0.82752 2 9469 9469;9520 7.9102 0 1 102690 16008 10888 10277 10283 19596;19597 19596 0.05526088760097991 KEVAYVHAY 9 Unmodified _KEVAYVHAY_ 0 0 0 ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.27978515625 2 540.279649 1078.54475 -0.031313 -1.6918E-05 0.20742 0.00011206 0.1761 9.5144E-05 540.2796689853159 33.537 0.6731 37.236 36.955 37.629 3.6983 62 43 2 0 0 0 0.38714 1 5920 5920 8.7454 0.58988 1 69181 16009 6297 10278 10284 19598 19598 0.00861456443226416 KEVAYVHAY 9 Unmodified _KEVAYVHAY_ 0 0 0 ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 540.2787475585938 2 540.279649 1078.54475 0.001299 7.0181E-07 0.52888 0.00028574 0.53018 0.00028644 540.2794771112243 33.926 0.71852 37.366 36.94 37.659 3.4398 89 45 3 0 0 0 0.36392 2 6046 6046;6092 10.074 0.6908 1 73919 16010 6297 10278 10284 19599;19600 19599 0.00861456443226416 KEVAYVHAY 9 Unmodified _KEVAYVHAY_ 0 0 0 ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 540.2799072265625 2 540.279649 1078.54475 -0.14246 -7.697E-05 1.2042 0.00065058 1.0617 0.00057361 540.2797153392867 34.131 0.42717 37.405 37.166 37.593 3.2748 67 27 3 0 0 0 0.20276 1 6176 6176 20.454 1.1966 1 71209 16011 6297 10278 10284 19601 19601 0.00861456443226416 KEVAYVHAY 9 Unmodified _KEVAYVHAY_ 0 0 0 ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF ENST00000358359.7_1_5:102456039-102456081:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 540.279649 1078.54475 -0.13807 -7.4594E-05 -0.89048 -0.00048111 -1.0285 -0.0005557 540.2789210006127 34.365 0.17751 37.629 37.599 37.777 3.2639 0.21887 -0.0012004 NaN 10.074 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 38182 16012 6297 10278 10284 0.00861456443226416 KEVEEISLL 9 Unmodified _KEVEEISLL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN48_class_I_Rep_2 6 530.3002319335938 2 530.300247 1058.58594 0.53327 0.00028279 -0.30492 -0.0001617 0.22835 0.00012109 530.2999741369321 54.79 0.66757 58.372 58.067 58.734 3.5817 79 40 3 0 0 0 0.079935 1 11604 11604 38.615 2.1085 1 240930 16013 1568 10279 10285 19602 19602 0.05899172692056709 KEVEEISLL 9 Unmodified _KEVEEISLL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN48_class_I_Rep_3 7 530.2999267578125 2 530.300247 1058.58594 0.361 0.00019144 -0.30854 -0.00016362 0.052466 2.7823E-05 530.29984838893 54.761 0.63166 58.331 58.053 58.685 3.5694 80 42 3 0 0 0 0.13455 1 11482 11482 27.223 3.4335 1 302740 16014 1568 10279 10285 19603 19603 0.05899172692056709 KEVEMVKK 8 Unmodified _KEVEMVKK_ 0 0 0 REV__ENST00000608804.1_1_1:172525038-172539871:+|nuORF REV__ENST00000608804.1_1_1:172525038-172539871:+|nuORF MSMS UPN47_class_I_Rep_3 4 495.7958679199219 2 495.786253 989.557952 NaN NaN NaN NaN NaN NaN NaN 68.879 1 72.076 71.576 72.576 3.1977 0 0 0 0.40746 1 16763 16763 0.69038 0 1 + 16015 18046 10280 10286 19604 19604 0.06275571230980859 KEVNILQF 8 Unmodified _KEVNILQF_ 0 0 0 REV__L1MC5a_dup506|chr1:96789720-96790659:-|3.828095617933089|0.2892202889229892|3.73|151.0|29|3|sense REV__L1MC5a_dup506|chr1:96789720-96790659:-|3.828095617933089|0.2892202889229892|3.73|151.0|29|3|sense MSMS UPN47_class_I_Rep_1 2 495.7718200683594 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 43.045 1 46.732 46.232 47.232 3.6875 0 0 0 0.40404 1 8813 8813 5.2307 0 1 + 16016 27161 10281 10287 19605 19605 0.0593864444861083 KEVPVVHT 8 Unmodified _KEVPVVHT_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 MULTI-MSMS UPN47_class_I_Rep_1 2 454.7639465332031 2 454.763635 907.512717 -0.22863 -0.00010397 0.39867 0.0001813 0.17004 7.7329E-05 454.76374739085526 44.497 0.63468 48.192 47.856 48.491 3.6951 67 45 2 0 0 0 0.82752 2 9240 9240;9288 23.148 1.4018 1 108820 16017 1225 10282 10288 19606;19607 19606 0.055260887600866226 KEVPVVHT 8 Unmodified _KEVPVVHT_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 MULTI-MSMS UPN47_class_I_Rep_2 3 454.7633056640625 2 454.763635 907.512717 -0.34643 -0.00015754 0.42501 0.00019328 0.078584 3.5737E-05 454.7637611743721 44.952 0.69456 48.307 48.04 48.734 3.3556 69 40 2 0 0 0 0.82752 1 9419 9419 23.148 1.4018 1 102690 16018 1225 10282 10288 19608 19608 0.055260887600866226 KEVPVVHT 8 Unmodified _KEVPVVHT_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 MULTI-MSMS UPN47_class_I_Rep_3 4 454.7638244628906 2 454.763635 907.512717 -0.40409 -0.00018376 0.37446 0.00017029 -0.029629 -1.3474E-05 454.7636972901015 45.085 1.1672 48.329 48.05 49.217 3.2441 112 75 2 0 0 0 0.82752 2 9504 9504;9550 28.487 10.352 1 143870 16019 1225 10282 10288 19609;19610 19609 0.055260887600866226 KEVPVVHT 8 Unmodified _KEVPVVHT_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 MSMS UPN48_class_I_Rep_1 5 454.763427734375 2 454.763635 907.512717 NaN NaN NaN NaN NaN NaN NaN 45.471 1 48.987 48.487 49.487 3.5162 0 0 0 0.33027 1 8772 8772 26.884 5.137 1 16020 1225 10282 10288 19611 19611 0.055260887600866226 KEVPVVHT 8 Unmodified _KEVPVVHT_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 454.763635 907.512717 0.025957 1.1804E-05 0.11327 5.1512E-05 0.13923 6.3316E-05 454.7636473207252 45.1 0.050014 48.617 48.585 48.635 3.5162 0.17626 -0.00021662 NaN 23.148 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 45855 16021 1225 10282 10288 0.055260887600866226 KEWDIRRF 8 Unmodified _KEWDIRRF_ 0 0 0 REV__ENSG00000154229|ENST00000413366|PRKCA REV__ENSG00000154229|ENST00000413366|PRKCA MULTI-MSMS UPN48_class_I_Rep_3 7 575.3116455078125 2 575.311815 1148.60908 0.36607 0.0002106 0.0080692 4.6423E-06 0.37414 0.00021525 575.3116977005935 50.294 0.78248 53.915 53.607 54.39 3.621 69 49 2 0 0 0 0.82752 1 10141 10141 4.756 1.4747 1 277290 + 16022 19732 10283 10289 19612 19612 0.040716563200248856 KEWELPFCI 9 Unmodified _KEWELPFCI_ 0 0 0 REV__HAL1_dup21960|chr20:32415309-32415882:-|1.5508891067572863|0.0144321204513528|6.75|151.0|27|1|anti-sense REV__HAL1_dup21960|chr20:32415309-32415882:-|1.5508891067572863|0.0144321204513528|6.75|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.7933959960938 2 582.791535 1163.56852 NaN NaN NaN NaN NaN NaN NaN 110.87 1 114.4 113.9 114.9 3.529 0 0 0 0.39518 1 27201 27201 1.8442 0 1 + 16023 23406 10284 10290 19613 19613 -0.006724461145950045 KEWSINLSY 9 Unmodified _KEWSINLSY_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS UPN47_class_I_Rep_1 2 570.2905883789062 2 570.290214 1138.56587 0.36239 0.00020667 -0.031376 -1.7893E-05 0.33102 0.00018878 570.2902372045153 73.53 1.6121 76.916 76.181 77.793 3.3861 453 138 5 0 0 0 0.20317 2 18070 18070;18108 20.415 1.0526 1 5725200 + 16024 17652 10285 10291 19614;19615 19614 0.0021342175209611014 KEYENIIAL 9 Unmodified _KEYENIIAL_ 0 0 0 nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2 nc|ENSG00000070081|P80303-2|NUCB2 nc|ENSG00000070081|P80303-2|NUCB2 MULTI-MSMS UPN48_class_I_Rep_2 6 546.8006591796875 2 546.800414 1091.58628 0.60261 0.00032951 -0.15487 -8.4683E-05 0.44774 0.00024482 546.8000521151288 56.204 0.66241 59.738 59.401 60.063 3.5333 96 53 2 0 0 0 0.20317 2 12060 12016;12060 20.415 15.248 1 381460 16025 1066 10286 10292 19616;19617 19617 0.04414592411899321 KEYENIIAL 9 Unmodified _KEYENIIAL_ 0 0 0 nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2 nc|ENSG00000070081|P80303-2|NUCB2 nc|ENSG00000070081|P80303-2|NUCB2 MULTI-MSMS UPN48_class_I_Rep_3 7 546.8004150390625 2 546.800414 1091.58628 0.35613 0.00019473 0.23285 0.00012732 0.58898 0.00032206 546.8002287693665 56.089 0.71542 59.644 59.338 60.054 3.5554 123 59 3 0 0 0 0.14216 1 11966 11966 26.268 5.8536 1 405750 16026 1066 10286 10292 19618 19618 0.04414592411899321 KEYENRDY 8 Unmodified _KEYENRDY_ 0 0 0 ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|2|intron;ENSG00000275066.5,SYNRG,chr17,-,I22.1,37520649,37529782|51|9.49|2|intron;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;ENSG00000275066.5,SYNRG,chr17,-,I6.1,37579435,37584321|27|7.01|6|intron;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;ENSG00000275066.5,SYNRG,chr17,-,I6.1,37579435,37584321|27|7.01|8|intron;ENSG00000275066.5,SYNRG,chr17,-,I6.1,37579435,37584321|27|7.01|9|intron;ENSG00000275066.5,SYNRG,chr17,-,I6.1,37579435,37584321|27|7.01|7|intron;ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|6|intron;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|7|intron;ENSG00000275066.5,SYNRG,chr17,-,I6.1,37579435,37584321|27|7.01|5|intron;ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|5|intron;ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|3|intron;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;ENSG00000275066.5,SYNRG,chr17,-,I6.1,37579435,37584321|27|7.01|3|intron;ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|1|intron ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|2|intron ENSG00000275066.5,SYNRG,chr17,-,I21.1,37529852,37535978|31|10.24|2|intron MSMS UPN47_class_I_Rep_2 3 558.7503662109375 2 558.751453 1115.48835 NaN NaN NaN NaN NaN NaN NaN 30.769 1 34.251 33.751 34.751 3.4821 0 0 0 0.40625 1 5118 5118 2.3027 0 1 16027 5823 10287 10293 19619 19619 -0.06477216184111967 KEYPKKKKY 9 Unmodified _KEYPKKKKY_ 0 0 0 REV__L1PA7_dup6899|chr8:99203069-99205514:+|2.670334275946741|0.1334319480403713|4.32|151.0|66|3|sense REV__L1PA7_dup6899|chr8:99203069-99205514:+|2.670334275946741|0.1334319480403713|4.32|151.0|66|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.361572265625 2 606.360973 1210.70739 0.49484 0.00030005 0.37102 0.00022497 0.86585 0.00052502 606.361095656345 36.759 0.090599 36.759 36.71 36.8 0 11 6 3 0 0 0 0.50015 1 6842 6842 0.6015 0 1 354470 + 16028 30151 10288 10294 19620 19620 0.11046839845243994 KEYVGIVRL 9 Unmodified _KEYVGIVRL_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN48_class_I_Rep_1 5 538.8268432617188 2 538.826766 1075.63898 0.36293 0.00019556 0.0034272 1.8467E-06 0.36636 0.0001974 538.8267479239219 45.777 1.1144 49.293 48.726 49.841 3.5162 122 78 2 0 0 0 0.12096 3 8826 8826;8872;8973 29.841 16.798 1 258240 16029 2683 10289 10295 19621;19622;19623 19621 0.10418595265377917 KEYVGIVRL 9 Unmodified _KEYVGIVRL_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN48_class_I_Rep_2 6 538.8269653320312 2 538.826766 1075.63898 0.37992 0.00020471 -0.24171 -0.00013024 0.13821 7.4469E-05 538.8265885518917 45.471 0.93101 49.229 48.825 49.756 3.7579 118 71 2 0 0 0 0.079935 2 8786 8735;8786 38.615 21.502 1 237970 16030 2683 10289 10295 19624;19625 19625 0.10418595265377917 KEYVGIVRL 9 Unmodified _KEYVGIVRL_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN48_class_I_Rep_3 7 538.8267822265625 2 538.826766 1075.63898 0.48532 0.00026151 -0.29924 -0.00016124 0.18608 0.00010027 538.8264979275149 45.572 0.87223 49.209 48.883 49.755 3.6369 107 64 2 0 0 0 0.015319 2 8778 8735;8778 66.457 42.436 1 233980 16031 2683 10289 10295 19626;19627 19627 0.10418595265377917 KFACPKMIR 9 Unmodified _KFACPKMIR_ 0 0 0 REV__ENST00000562863.1_1_16:68325384-68325468:+|nuORF REV__ENST00000562863.1_1_16:68325384-68325468:+|nuORF MSMS UPN48_class_I_Rep_2 6 547.3064575195312 2 547.30409 1092.59363 NaN NaN NaN NaN NaN NaN NaN 34.145 1 37.806 37.306 38.306 3.6607 0 0 0 0.38639 1 5472 5472 3.9444 1.6417 1 + 16032 23035 10290 10296 19628 19628 0.05103330206952705 KFADQVGPV 9 Unmodified _KFADQVGPV_ 0 0 0 REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|150|2|anti-sense REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|150|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 480.27392578125 2 480.761092 959.507631 0.10299 4.9513E-05 -0.24889 -0.00011966 -0.1459 -7.0144E-05 480.7609171963775 51.293 0.30884 54.903 54.694 55.003 3.6105 29 21 2 0 0 0 0.12034 1 10439 10439 7.2892 2.5332 1 79131 + 16033 31492 10291 10297 19629 19629 0.02625784897475114 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS UPN48_class_I_Rep_1 5 584.271728515625 2 584.27149 1166.52843 0.54091 0.00031604 0.099827 5.8326E-05 0.64074 0.00037437 584.2714397445352 63.176 0.96181 66.639 66.239 67.201 3.4625 224 70 4 0 0 0 0.0064536 7 14191 14103;14146;14191;14230;14270;14308;14346 145.13 77.049 1 1265900 16034 4123 10292 10298 19630;19631;19632;19633;19634;19635;19636 19632 -0.0481766951352256 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS UPN48_class_I_Rep_1 5 584.2734985351562 2 584.27149 1166.52843 0.53204 0.00031085 3.0311 0.001771 3.5631 0.0020818 584.7737255294413 63.834 0.13708 67.292 67.187 67.324 3.4578 17 11 2 0 0 0 0.35123 1 14400 14400 10.8 2.0541 1 89703 16035 4123 10292 10298 19637 19637 -0.0481766951352256 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS UPN48_class_I_Rep_2 6 584.2717895507812 2 584.27149 1166.52843 0.52636 0.00030754 0.12359 7.2213E-05 0.64995 0.00037975 584.271456059985 63.043 1.0153 66.517 66.132 67.147 3.4738 240 78 4 0 0 0 0.0069835 9 14113 14038;14075;14113;14154;14195;14231;14272;14312;14321 145.13 77.049 1 1400000 16036 4123 10292 10298 19638;19639;19640;19641;19642;19643;19644;19645;19646 19640 -0.0481766951352256 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS UPN48_class_I_Rep_3 7 584.2716064453125 2 584.27149 1166.52843 0.51298 0.00029972 0.058503 3.4182E-05 0.57148 0.0003339 584.2714375530276 62.944 1.086 66.453 66.033 67.119 3.5091 236 81 4 0 0 0 0.0058741 7 14135 13931;13973;14012;14055;14096;14135;14178 145.13 73.207 1 1559200 16037 4123 10292 10298 19647;19648;19649;19650;19651;19652;19653 19652 -0.0481766951352256 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS UPN48_class_I_Rep_3 7 584.2741088867188 2 584.27149 1166.52843 0.51825 0.0003028 2.0378 0.0011906 2.556 0.0014934 584.2727113443932 63.666 0.19582 67.175 67.11 67.306 3.5091 16 15 2 0 0 0 0.40701 1 14251 14251 7.609 0.31972 1 83825 16038 4123 10292 10298 19654 19654 -0.0481766951352256 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 584.27149 1166.52843 0.5214 0.00030464 4.729 0.002763 5.2504 0.0030676 584.2744353087286 63.77 0.29347 67.245 67.147 67.441 3.4743 0.0076274 0.0016798 NaN 10.8 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 77021 16039 4123 10292 10298 -0.0481766951352256 KFAFCFCDIF 10 Unmodified _KFAFCFCDIF_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|105|2|anti-sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|105|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 620.7786865234375 2 620.780113 1239.54567 0.354 0.00021976 -1.1582 -0.00071901 -0.80423 -0.00049925 620.7780301710092 47.48 0.41387 50.721 50.46 50.874 3.2405 70 30 4 0 0 0 0.54466 1 10280 10280 6.2058 1.4498 1 177770 + 16040 25247 10293 10299 19655 19655 -0.06451788503727585 KFCFKQRE 8 Unmodified _KFCFKQRE_ 0 0 0 REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS UPN47_class_I_Rep_1 2 543.7831420898438 2 543.281669 1084.54878 0.24153 0.00013122 -1.4357 -0.00077997 -1.1941 -0.00064875 543.7824696870815 48.846 0.75587 52.509 52.095 52.851 3.6621 68 50 2 0 0 0 0.82752 1 10483 10483 2.0598 0.57785 1 60733 + 16041 20382 10294 10300 19656 19656 0.009892226652937097 KFCFRLICWF 10 Unmodified _KFCFRLICWF_ 0 0 0 REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|176|1|anti-sense REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|176|1|anti-sense MSMS UPN48_class_I_Rep_1 5 454.8999938964844 3 454.89984 1361.67769 NaN NaN NaN NaN NaN NaN NaN 17.003 1 20.53 20.03 21.03 3.5261 0 0 0 0.53105 1 916 916 0.15932 0 1 + 16042 30477 10295 10301 19657 19657 0.011318613038838521 KFCVRFVA 8 Unmodified _KFCVRFVA_ 0 0 0 REV__ENST00000265631.9_1_7:95750097-95750145:-|nuORF REV__ENST00000265631.9_1_7:95750097-95750145:-|nuORF MSMS UPN48_class_I_Rep_3 7 485.28558349609375 2 485.270573 968.526593 NaN NaN NaN NaN NaN NaN NaN 52.075 1 55.673 55.173 56.173 3.5979 0 0 0 0.40581 1 10728 10728 2.8892 0 1 + 16043 21594 10296 10302 19658 19658 0.04107042987538989 KFDPKARL 8 Unmodified _KFDPKARL_ 0 0 0 REV__ENST00000525522.5_1_11:494693-499199:-|nuORF REV__ENST00000525522.5_1_11:494693-499199:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.7928771972656 2 487.792727 973.5709 0.20919 0.00010204 -0.092753 -4.5244E-05 0.11644 5.6797E-05 487.79253024161824 31.407 1.1969 34.941 34.563 35.76 3.5342 303 122 3 0 0 0 0.82752 1 4824 4824 4.3292 4.3292 1 597650 + 16044 17613 10297 10303 19659 19659 0.08305770405377189 KFEHITNRRKR 11 Unmodified _KFEHITNRRKR_ 0 0 0 REV__chr7:81770013-81770291|138|24.06|0.36|6.07|-|ENST00000421558|HGF,HGF REV__chr7:81770013-81770291|138|24.06|0.36|6.07|-|ENST00000421558|HGF,HGF MULTI-SECPEP UPN46_class_I_Rep_3 1 495.3229064941406 3 495.623414 1483.84841 -0.16032 -7.9458E-05 -0.40388 -0.00020017 -0.5642 -0.00027963 495.62323507492124 20.707 0.083382 20.707 20.652 20.736 0 12 9 2 0 0 0 22.551 1 2191 2191 0.094841 0 1 42489 + 16045 17457 10298 10304 19660 19660 0.12584231271193858 KFETFFHH 8 Unmodified _KFETFFHH_ 0 0 0 REV__L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|24|1|sense REV__L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|24|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.7675170898438 2 546.766709 1091.51886 0.40343 0.00022058 0.24023 0.00013135 0.64365 0.00035193 546.7668711452332 45.011 0.14722 48.773 48.689 48.836 3.7617 13 10 2 0 0 0 0.82752 1 8635 8635 2.3027 0 1 101370 + 16046 29406 10299 10305 19661 19661 -0.02323393008396124 KFFEKIDKI 9 Unmodified _KFFEKIDKI_ 0 0 0 L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.3422241210938 2 584.342249 1166.66995 0.51854 0.000303 -0.073883 -4.3173E-05 0.44465 0.00025983 584.3421670474555 57.76 0.90209 61.254 60.95 61.852 3.4942 130 63 3 0 0 0 0.066364 1 12552 12552 41.956 2.0059 1 559080 16047 8882 10300 10306 19662 19662 0.09327748579607942 KFFEKIDKI 9 Unmodified _KFFEKIDKI_ 0 0 0 L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense L1M4_dup199|chr1:40215746-40216199:+|1.5132557877847208|0.0200734017301155|6.24|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 584.3424682617188 2 584.342249 1166.66995 0.58019 0.00033903 0.011178 6.5315E-06 0.59137 0.00034556 584.3421297955294 57.749 0.87494 61.264 60.886 61.761 3.5142 144 61 3 0 0 0 0.048662 1 12520 12520 49.554 3.8144 1 716110 16048 8882 10300 10306 19663 19663 0.09327748579607942 KFFFFFFIILY 11 Unmodified _KFFFFFFIILY_ 0 0 0 REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|283|3|anti-sense REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|283|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 511.23468017578125 3 511.284454 1530.83153 0.29022 0.00014839 -1.2153 -0.00062139 -0.92512 -0.000473 511.2838059306739 36.889 0.22943 40.591 40.469 40.698 3.7021 33 25 2 0 0 0 22.551 1 6235 6235 1.3296 0 1 103010 + 16049 28955 10301 10307 19664 19664 0.0873491761274181 KFFFFFFIILY 11 Unmodified _KFFFFFFIILY_ 0 0 0 REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|283|3|anti-sense REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|283|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 511.619384765625 3 511.284454 1530.83153 0.20037 0.00010245 -1.2648 -0.00064666 -1.0644 -0.00054422 511.61826744108924 35.433 0.55084 39.105 38.962 39.513 3.6721 76 56 3 0 0 0 22.551 1 5800 5800 10.899 3.4219 1 181300 + 16050 28955 10301 10307 19665 19665 0.0873491761274181 KFFFWQLRYFI 11 Unmodified _KFFFWQLRYFI_ 0 0 0 L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|307|3|anti-sense L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|307|3|anti-sense L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|307|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.6243896484375 3 532.29049 1593.84964 0.43657 0.00023238 -0.98978 -0.00052685 -0.5532 -0.00029447 532.2905433538143 46.109 0.78626 49.746 49.443 50.229 3.6369 128 51 4 0 0 0 0.68478 1 8842 8842 0.094841 0.011491 1 405230 16051 15102 10302 10308 19666 19666 0.07647052587412873 KFFFYLYF 8 Unmodified _KFFFYLYF_ 0 0 0 LTR70_dup31|chr7:64687550-64688257:+|2.3164987355452613|0.3051429841383287|2.92|151.0|11|2|sense LTR70_dup31|chr7:64687550-64688257:+|2.3164987355452613|0.3051429841383287|2.92|151.0|11|2|sense LTR70_dup31|chr7:64687550-64688257:+|2.3164987355452613|0.3051429841383287|2.92|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 587.8037719726562 2 587.802229 1173.5899 NaN NaN NaN NaN NaN NaN NaN 44.689 1 48.451 47.951 48.951 3.7617 0 0 0 0.40604 1 8545 8545 2.5775 0.078994 1 16052 15703 10303 10309 19667 19667 0.010053069764353495 KFFIIFFQPFY 11 Unmodified _KFFIIFFQPFY_ 0 0 0 L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.6045227050781 3 499.604075 1495.7904 0.25271 0.00012625 1.0029 0.00050104 1.2556 0.00062729 499.6044234892567 50.835 0.28188 54.174 53.979 54.261 3.3386 27 15 3 0 0 0 0.68024 1 11207 11207 0.50596 0 1 63172 16053 11530 10304 10310 19668 19668 0.062331565732392846 KFFIIFFQPFY 11 Unmodified _KFFIIFFQPFY_ 0 0 0 L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 499.604075 1495.7904 0.048564 2.4263E-05 1.5645 0.00078162 1.613 0.00080589 499.93923936874734 50.569 0.39955 54.198 54.033 54.433 3.6285 -0.013327 0.00032305 NaN 0.50596 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 86598 16054 11530 10304 10310 0.062331565732392846 KFFIIFFQPFY 11 Unmodified _KFFIIFFQPFY_ 0 0 0 L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 499.604075 1495.7904 0.25271 0.00012625 1.0029 0.00050104 1.2556 0.00062729 499.6044234892567 50.835 0.28188 54.174 53.979 54.261 3.3386 -0.03718 -0.00051871 NaN 0.50596 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 63172 16055 11530 10304 10310 0.062331565732392846 KFFIIFFQPFY 11 Unmodified _KFFIIFFQPFY_ 0 0 0 L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|16|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 499.604075 1495.7904 0.32595 0.00016285 1.0897 0.0005444 1.4156 0.00070725 499.6045204446745 51.045 0.37008 54.262 54.082 54.453 3.2163 0.050507 -0.00038862 NaN 0.50596 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 60495 16056 11530 10304 10310 0.062331565732392846 KFFIRREFCKY 11 Unmodified _KFFIRREFCKY_ 0 0 0 L1MC3_dup7484|chrX:107080622-107082631:-|4.981860179797956|0.3514993517750268|3.83|151.0|132|3|anti-sense L1MC3_dup7484|chrX:107080622-107082631:-|4.981860179797956|0.3514993517750268|3.83|151.0|132|3|anti-sense L1MC3_dup7484|chrX:107080622-107082631:-|4.981860179797956|0.3514993517750268|3.83|151.0|132|3|anti-sense MSMS UPN48_class_I_Rep_3 7 512.9414672851562 3 512.942985 1535.80712 NaN NaN NaN NaN NaN NaN NaN 40.589 1 44.24 43.74 44.74 3.6509 0 0 0 0.38417 1 7237 7237 0.50596 0 1 16057 11368 10305 10311 19669 19669 0.060653341875422484 KFFLVWSY 8 Unmodified _KFFLVWSY_ 0 0 0 REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense MSMS UPN47_class_I_Rep_2 3 545.2935180664062 2 545.292028 1088.5695 NaN NaN NaN NaN NaN NaN NaN 26.593 1 30.088 29.588 30.588 3.4945 0 0 0 0.40604 1 3872 3872 2.5775 0 1 + 16058 25439 10306 10312 19670 19670 0.028761363166267984 KFFLVWSY 8 Unmodified _KFFLVWSY_ 0 0 0 REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense MSMS UPN48_class_I_Rep_3 7 545.2927856445312 2 545.292028 1088.5695 NaN NaN NaN NaN NaN NaN NaN 26.463 1 30.229 29.729 30.729 3.7663 0 0 0 0.40746 1 3353 3353 0.69038 0 1 + 16059 25439 10306 10312 19671 19671 0.028761363166267984 KFFQSYHQ 8 Unmodified _KFFQSYHQ_ 0 0 0 REV__L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|1|1|sense REV__L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 542.76318359375 2 542.764166 1083.51378 NaN NaN NaN NaN NaN NaN NaN 105.94 1 105.94 105.44 106.44 0 0 0 0 0.40746 1 25837 25837 0.69038 0 1 + 16060 26285 10307 10313 19672 19672 -0.024636968710183282 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN46_class_I_Rep_3 1 597.8560791015625 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 87.292 1 87.292 86.792 87.792 0 0 0 0 0.40625 1 20907 20907 2.3027 0.82083 1 16061 5132 10308 10314 19673 19673 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN46_class_I_Rep_3 1 597.8553466796875 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 87.434 1 87.434 86.934 87.934 0 0 0 0 0.40625 1 20947 20947 2.3027 0.82083 1 16062 5132 10308 10314 19674 19674 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN46_class_I_Rep_3 1 597.8554077148438 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 87.493 1 87.493 86.993 87.993 0 0 0 0 0.40625 1 20965 20965 2.3027 0.65011 1 16063 5132 10308 10314 19675 19675 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN46_class_I_Rep_3 1 597.8558349609375 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 87.61 1 87.61 87.11 88.11 0 0 0 0 0.40625 1 21001 21001 2.3027 0.82083 1 16064 5132 10308 10314 19676 19676 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN46_class_I_Rep_3 1 597.8572387695312 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 88.014 1 88.014 87.514 88.514 0 0 0 0 0.40625 1 21115 21115 2.3027 0.65011 1 16065 5132 10308 10314 19677 19677 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_1 2 597.8560180664062 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 84.234 1 87.799 87.299 88.299 3.5655 0 0 0 0.40625 1 21076 21076 2.3027 0.82083 1 16066 5132 10308 10314 19678 19678 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_2 3 597.8563232421875 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 84.315 1 87.738 87.238 88.238 3.4232 0 0 0 0.40625 1 21028 21028 2.3027 0.82083 1 16067 5132 10308 10314 19679 19679 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_3 4 597.8569946289062 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.616 1 86.966 86.466 87.466 3.35 0 0 0 0.40625 1 20976 20976 2.3027 0.82083 1 16068 5132 10308 10314 19680 19680 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_3 4 597.8560791015625 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.64 1 86.99 86.49 87.49 3.35 0 0 0 0.40625 1 20983 20983 2.3027 0.82083 1 16069 5132 10308 10314 19681 19681 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_3 4 597.8565673828125 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.89 1 87.24 86.74 87.74 3.35 0 0 0 0.40625 1 21048 21048 2.3027 0.82083 1 16070 5132 10308 10314 19682 19682 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_1 5 597.8563232421875 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.675 1 87.262 86.762 87.762 3.5871 0 0 0 0.40625 1 20016 20016 2.3027 0.82083 1 16071 5132 10308 10314 19683 19683 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_1 5 597.8560791015625 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.941 1 87.538 87.038 88.038 3.5973 0 0 0 0.40625 1 20089 20089 2.3027 0.82083 1 16072 5132 10308 10314 19684 19684 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_1 5 597.8562622070312 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 86.269 1 89.882 89.382 90.382 3.613 0 0 0 0.40625 1 20667 20667 2.3027 1.6124 1 16073 5132 10308 10314 19685 19685 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_1 5 597.8564453125 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 95.601 1 99.217 98.717 99.717 3.6167 0 0 0 0.40625 1 23028 23028 2.3027 0.65011 1 16074 5132 10308 10314 19686 19686 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_2 6 597.8563232421875 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.606 1 87.288 86.788 87.788 3.6814 0 0 0 0.40625 1 19874 19874 2.3027 0.82083 1 16075 5132 10308 10314 19687 19687 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_2 6 597.8564453125 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.697 1 87.379 86.879 87.879 3.6814 0 0 0 0.40625 1 19900 19900 2.3027 0.82083 1 16076 5132 10308 10314 19688 19688 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_2 6 597.8563842773438 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 84.484 1 88.178 87.678 88.678 3.6937 0 0 0 0.40625 1 20104 20104 2.3027 0.4585 1 16077 5132 10308 10314 19689 19689 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_3 7 597.8558959960938 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.932 1 87.66 87.16 88.16 3.7281 0 0 0 0.40625 1 19913 19913 2.3027 1.6124 1 16078 5132 10308 10314 19690 19690 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_3 7 597.8568115234375 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 86.029 1 89.799 89.299 90.299 3.7701 0 0 0 0.40625 1 20420 20420 2.3027 0.9732 1 16079 5132 10308 10314 19691 19691 0.1043165192743345 KFFRWVRR 8 Unmodified _KFFRWVRR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_3 7 597.8573608398438 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 86.223 1 89.993 89.493 90.493 3.7701 0 0 0 0.40625 1 20470 20470 2.3027 0.82083 1 16080 5132 10308 10314 19692 19692 0.1043165192743345 KFFSLKLLNIG 11 Unmodified _KFFSLKLLNIG_ 0 0 0 L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 640.8948974609375 2 640.392273 1278.76999 0.51559 0.00033018 0.84288 0.00053977 1.3585 0.00086995 640.894523351713 52.122 0.08094 55.455 55.408 55.489 3.3332 6 3 2 0 0 0 0.67519 1 11609 11609 0.96228 0 1 175410 16081 14378 10309 10315 19693 19693 0.14175985913425393 KFFSLKLLNIG 11 Unmodified _KFFSLKLLNIG_ 0 0 0 L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 640.392273 1278.76999 0.36213 0.00023191 1.2804 0.00081996 1.6425 0.0010519 640.393259487085 51.86 0.05262 55.453 55.424 55.477 3.5932 -0.068032 0.00017309 NaN 0.96228 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 174750 16082 14378 10309 10315 0.14175985913425393 KFFSLKLLNIG 11 Unmodified _KFFSLKLLNIG_ 0 0 0 L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 640.392273 1278.76999 0.51559 0.00033018 0.84288 0.00053977 1.3585 0.00086995 640.894523351713 52.122 0.08094 55.455 55.408 55.489 3.3332 -0.066278 -0.00038728 NaN 0.96228 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 175410 16083 14378 10309 10315 0.14175985913425393 KFFSLKLLNIG 11 Unmodified _KFFSLKLLNIG_ 0 0 0 L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|254|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 640.392273 1278.76999 0.50459 0.00032314 0.55867 0.00035777 1.0633 0.00068091 640.3925770373946 52.058 0.030121 55.655 55.629 55.659 3.5979 0.13431 -0.00075129 NaN 0.96228 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 104000 16084 14378 10309 10315 0.14175985913425393 KFFYLKAL 8 Unmodified _KFFYLKAL_ 0 0 0 REV__L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|83|1|anti-sense REV__L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|83|1|anti-sense MSMS UPN48_class_I_Rep_2 6 515.3098754882812 2 515.310221 1028.60589 NaN NaN NaN NaN NaN NaN NaN 89.361 1 93.099 92.599 93.599 3.7379 0 0 0 0.40746 1 21287 21287 0.69038 0 1 + 16085 28008 10310 10316 19694 19694 0.0927301321332834 KFGSDDCTTL 10 Unmodified _KFGSDDCTTL_ 0 0 0 L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|30|1|sense L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|30|1|sense L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|30|1|sense MSMS UPN46_class_I_Rep_3 1 543.7434692382812 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 117.45 1 117.45 116.95 117.95 0 0 0 0 0.53105 1 29110 29110 1.1933 0.39971 1 16086 9835 10311 10317 19695 19695 -0.06939094150334313 KFGSFTPY 8 Unmodified _KFGSFTPY_ 0 0 0 REV__MLT1D_dup8768|chr7:128632974-128633329:+|1.504614193806345|0.1306593699095908|3.53|151.0|15|1|anti-sense REV__MLT1D_dup8768|chr7:128632974-128633329:+|1.504614193806345|0.1306593699095908|3.53|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_3 7 473.73785400390625 2 473.737086 945.459619 NaN NaN NaN NaN NaN NaN NaN 104.57 1 108.29 107.79 108.79 3.7192 0 0 0 0.40404 1 24690 24690 5.2307 0 1 + 16087 31686 10312 10318 19696 19696 -0.015292890225850897 KFGSYILFEFL 11 Unmodified _KFGSYILFEFL_ 0 0 0 REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense MSMS UPN47_class_I_Rep_3 4 455.2484436035156 3 455.248068 1362.72238 NaN NaN NaN NaN NaN NaN NaN 45.446 1 48.69 48.19 49.19 3.2441 0 0 0 0.38417 1 9630 9630 2.2527 1.0379 1 + 16088 24756 10313 10319 19697 19697 0.05552286922556959 KFHAPWVF 8 Unmodified _KFHAPWVF_ 0 0 0 REV__nc|ENSG00000119725|Q86VK4-2|ZNF410 REV__nc|ENSG00000119725|Q86VK4-2|ZNF410 MSMS UPN46_class_I_Rep_3 1 516.27783203125 2 516.276712 1030.53887 NaN NaN NaN NaN NaN NaN NaN 79.903 1 79.903 79.403 80.403 0 0 0 0 0.40738 1 18795 18795 0.79363 0.10326 1 + 16089 18685 10314 10320 19698 19698 0.024824027222166478 KFHFVQTRL 9 Unmodified _KFHFVQTRL_ 0 0 0 REV__L1ME1_dup22832|chr12:89698215-89698643:+|1.2880674573392576|0.0032579669094479|8.63|150.0|17|3|sense REV__L1ME1_dup22832|chr12:89698215-89698643:+|1.2880674573392576|0.0032579669094479|8.63|150.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 588.3372192382812 2 588.337833 1174.66111 NaN NaN NaN NaN NaN NaN NaN 67.272 1 70.633 70.133 71.133 3.3611 0 0 0 0.3967 1 16167 16167 1.4819 0.28856 1 + 16090 27684 10315 10321 19699 19699 0.08076819733810225 KFHPAPFI 8 Unmodified _KFHPAPFI_ 0 0 0 REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|56|2|anti-sense REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.7705383300781 2 478.771263 955.527973 -0.4727 -0.00022631 -0.3943 -0.00018878 -0.867 -0.00041509 478.77090814980164 35.712 0.62019 38.966 38.619 39.24 3.2547 59 41 2 0 0 0 0.82752 1 6715 6715 2.5775 0.27475 1 69892 + 16091 26705 10316 10322 19700 19700 0.04843000347932502 KFHRSLYY 8 Unmodified _KFHRSLYY_ 0 0 0 REV__ERV3-16A3_I-int_dup719|chr2:143262382-143263413:-|3.4095799104971447|0.0122105501181654|8.13|151.0|65|2|anti-sense REV__ERV3-16A3_I-int_dup719|chr2:143262382-143263413:-|3.4095799104971447|0.0122105501181654|8.13|151.0|65|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.2946166992188 2 557.295633 1112.57671 0.49441 0.00027553 -1.0667 -0.00059449 -0.57234 -0.00031896 557.2949885399734 82.684 0.19339 86.353 86.225 86.418 3.669 35 23 2 0 0 0 0.82752 1 19622 19622 28.487 2.1456 1 127940 + 16092 23250 10317 10323 19701 19701 0.024928689170337748 KFHRSLYY 8 Unmodified _KFHRSLYY_ 0 0 0 REV__ERV3-16A3_I-int_dup719|chr2:143262382-143263413:-|3.4095799104971447|0.0122105501181654|8.13|151.0|65|2|anti-sense REV__ERV3-16A3_I-int_dup719|chr2:143262382-143263413:-|3.4095799104971447|0.0122105501181654|8.13|151.0|65|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.2951049804688 2 557.295633 1112.57671 NaN NaN NaN NaN NaN NaN NaN 82.489 1 86.158 85.658 86.658 3.669 0 0 0 0.35163 1 19595 19595 21.747 1.293 1 + 16093 23250 10317 10323 19702 19702 0.024928689170337748 KFHVVSLY 8 Unmodified _KFHVVSLY_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|101|1|anti-sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|101|1|anti-sense MSMS UPN47_class_I_Rep_1 2 496.78314208984375 2 496.781828 991.549102 NaN NaN NaN NaN NaN NaN NaN 82.885 1 86.424 85.924 86.924 3.5386 0 0 0 0.40501 1 20716 20716 3.9444 1.6417 1 + 16094 23744 10318 10324 19703 19703 0.05298965656800192 KFHYLWKLF 9 Unmodified _KFHYLWKLF_ 0 0 0 REV__L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|28|1|anti-sense REV__L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_2 3 641.3613891601562 2 641.360776 1280.707 NaN NaN NaN NaN NaN NaN NaN 12.225 1 15.614 15.114 16.114 3.3885 0 0 0 0.4007 1 42 42 0.52476 0.066424 1 + 16095 27638 10319 10325 19704 19704 0.07787464916009412 KFICFRYY 8 Unmodified _KFICFRYY_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.791015625 2 570.288963 1138.56337 0.43336 0.00024714 0.61467 0.00035054 1.048 0.00059768 570.790416433035 72.775 0.068657 76.072 76.012 76.081 3.2971 7 4 2 0 0 0 0.82752 1 17860 17860 13.508 0.46542 1 41144 + 16096 25323 10320 10326 19705 19705 -0.00036705186562357994 KFICFRYY 8 Unmodified _KFICFRYY_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 570.2676391601562 2 570.288963 1138.56337 0.43152 0.00024609 1.0899 0.00062155 1.5214 0.00086764 570.7904698565386 72.589 0.20619 75.886 75.757 75.964 3.2971 25 16 2 0 0 0 0.72333 1 17815 17815 8.5933 3.3626 1 50479 + 16097 25323 10320 10326 19706 19706 -0.00036705186562357994 KFICFRYY 8 Unmodified _KFICFRYY_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.29052734375 2 570.288963 1138.56337 0.45279 0.00025822 1.6701 0.00095244 2.1229 0.0012107 570.2897290699374 72.918 0.081085 76.145 76.092 76.173 3.2271 12 7 2 0 0 0 0.82752 1 17980 17980 8.5933 1.8701 1 47816 + 16098 25323 10320 10326 19707 19707 -0.00036705186562357994 KFICFRYY 8 Unmodified _KFICFRYY_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|219|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 570.288963 1138.56337 0.43336 0.00024714 0.61467 0.00035054 1.048 0.00059768 570.790416433035 72.775 0.068657 76.072 76.012 76.081 3.2971 -0.036245 -0.00091508 NaN 8.5933 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 41144 + 16099 25323 10320 10326 -0.00036705186562357994 KFIDDPEVY 9 Unmodified _KFIDDPEVY_ 0 0 0 ENSG00000082497|ENST00000367012|SERTAD4 ENSG00000082497|ENST00000367012|SERTAD4 ENSG00000082497|ENST00000367012|SERTAD4 MULTI-MSMS UPN47_class_I_Rep_1 2 563.277099609375 2 563.276772 1124.53899 0.38844 0.0002188 0.08438 4.7529E-05 0.47282 0.00026633 563.2767428234652 74.997 1.1982 78.391 77.999 79.197 3.3937 265 109 4 0 0 0 0.30034 2 18646 18386;18646 13.906 6.7232 1 692180 16100 1227 10321 10327 19708;19709 19709 -0.01829686859082358 KFIDDPEVY 9 Unmodified _KFIDDPEVY_ 0 0 0 ENSG00000082497|ENST00000367012|SERTAD4 ENSG00000082497|ENST00000367012|SERTAD4 ENSG00000082497|ENST00000367012|SERTAD4 MULTI-MSMS UPN47_class_I_Rep_2 3 563.7789306640625 2 563.276772 1124.53899 0.45665 0.00025722 0.22507 0.00012677 0.68171 0.00038399 563.276829642386 75.179 1.1389 78.492 78.115 79.254 3.3127 295 113 4 0 0 0 0.30034 1 18692 18692 13.906 0 1 952050 16101 1227 10321 10327 19710 19710 -0.01829686859082358 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MSMS UPN48_class_I_Rep_1 5 543.794677734375 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 39.889 1 43.393 42.893 43.893 3.5048 0 0 0 0.36857 1 7096 7096 7.1017 0.89594 1 16102 1491 10322 10328 19711 19711 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MSMS UPN48_class_I_Rep_1 5 543.7952270507812 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 40.058 1 43.563 43.063 44.063 3.5048 0 0 0 0.23173 1 7145 7145 14.405 4.3315 1 16103 1491 10322 10328 19712 19712 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MSMS UPN48_class_I_Rep_2 6 543.7943725585938 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 39.714 1 43.445 42.945 43.945 3.7309 0 0 0 0.36857 1 7075 7075 7.1017 1.8048 1 16104 1491 10322 10328 19713 19713 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MSMS UPN48_class_I_Rep_2 6 543.7966918945312 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 39.838 1 43.579 43.079 44.079 3.7413 0 0 0 0.29913 1 7111 7111 10.8 4.5937 1 16105 1491 10322 10328 19714 19714 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MSMS UPN48_class_I_Rep_3 7 543.7959594726562 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 40.181 1 43.832 43.332 44.332 3.6509 0 0 0 0.39036 1 7115 7115 2.9952 0.69251 1 16106 1491 10322 10328 19715 19715 0.03634609757477847 KFIDYRERRIQ 11 Unmodified _KFIDYRERRIQ_ 0 0 0 REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|61|2|sense REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.61981201171875 3 508.619558 1522.83684 0.26559 0.00013508 -0.27111 -0.00013789 -0.0055195 -2.8073E-06 508.61938515816155 35.997 1.2308 39.507 38.967 40.198 3.5101 303 127 3 0 0 0 0.68478 1 6026 6026 0.094841 0 1 435700 + 16107 24078 10323 10329 19716 19716 0.096339894572111 KFIDYRERRIQ 11 Unmodified _KFIDYRERRIQ_ 0 0 0 REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|61|2|sense REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 508.6193542480469 3 508.619558 1522.83684 0.29004 0.00014752 -0.32463 -0.00016511 -0.034589 -1.7593E-05 508.6193584995944 35.756 1.2701 39.444 38.952 40.222 3.6877 277 137 3 0 0 0 0.68132 1 5886 5886 0.40827 0 1 407400 + 16108 24078 10323 10329 19717 19717 0.096339894572111 KFIDYRERRIQ 11 Unmodified _KFIDYRERRIQ_ 0 0 0 REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|61|2|sense REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.6195983886719 3 508.619558 1522.83684 0.18137 9.2248E-05 -0.26414 -0.00013434 -0.082767 -4.2097E-05 508.9536889389062 35.698 1.279 39.364 38.906 40.185 3.6667 295 129 3 0 0 0 0.68478 1 5848 5848 0.094841 0.094841 1 370760 + 16109 24078 10323 10329 19718 19718 0.096339894572111 KFIEQVTIP 9 Unmodified _KFIEQVTIP_ 0 0 0 ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100092438-100109914:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 537.8134155273438 2 537.813325 1073.6121 0.31703 0.0001705 -0.21603 -0.00011618 0.101 5.4318E-05 537.8132176343526 73.442 0.32708 73.442 73.144 73.471 0 66 37 2 0 0 0 0.42249 1 17024 17024 6.7232 2.7788 1 820190 16110 6441 10324 10330 19719 19719 0.07823486654206135 KFIEQVTIP 9 Unmodified _KFIEQVTIP_ 0 0 0 ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100092438-100109914:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 537.8133544921875 2 537.813325 1073.6121 0.35556 0.00019122 -0.075262 -4.0477E-05 0.2803 0.00015075 537.8132556217972 66.033 0.90677 69.39 69.081 69.988 3.3576 119 60 3 0 0 0 0.42249 1 15786 15786 6.7232 0.51738 1 515300 16111 6441 10324 10330 19720 19720 0.07823486654206135 KFIEQVTIP 9 Unmodified _KFIEQVTIP_ 0 0 0 ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100092438-100109914:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 537.813325 1073.6121 0.31773 0.00017088 -0.11128 -5.9846E-05 0.20645 0.00011103 537.81323740008 66.291 0.91208 69.55 69.243 70.155 3.2588 0.038047 -6.0416E-05 NaN 6.7232 85 59 2 NaN NaN NaN NaN 0 NaN NaN 0 612490 16112 6441 10324 10330 0.07823486654206135 KFIEQVTIP 9 Unmodified _KFIEQVTIP_ 0 0 0 ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100092438-100109914:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 537.813325 1073.6121 0.41495 0.00022317 -0.0078326 -4.2125E-06 0.40712 0.00021896 537.8131909733356 66.41 1.0226 69.596 69.242 70.264 3.1853 0.083659 5.0852E-05 NaN 6.7232 161 79 3 NaN NaN NaN NaN 0 NaN NaN 0 519980 16113 6441 10324 10330 0.07823486654206135 KFIFGFGCFH 10 Unmodified _KFIFGFGCFH_ 0 0 0 REV__L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|45|3|anti-sense REV__L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.7939453125 2 601.794412 1201.57427 NaN NaN NaN NaN NaN NaN NaN 48.286 1 52.023 51.523 52.523 3.7361 0 0 0 0.53105 1 9631 9631 1.8442 0.19162 1 + 16114 28695 10325 10331 19721 19721 -0.018453028122621618 KFIHFTFF 8 Unmodified _KFIHFTFF_ 0 0 0 L1MDa_dup5243|chr13:21429358-21430968:-|8.22458477650681|0.1050164229974785|6.29|151.0|84|2|anti-sense L1MDa_dup5243|chr13:21429358-21430968:-|8.22458477650681|0.1050164229974785|6.29|151.0|84|2|anti-sense L1MDa_dup5243|chr13:21429358-21430968:-|8.22458477650681|0.1050164229974785|6.29|151.0|84|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.7944946289062 2 543.792195 1085.56984 NaN NaN NaN NaN NaN NaN NaN 40.246 1 43.988 43.488 44.488 3.7413 0 0 0 0.39819 1 7227 7227 8.5933 0 1 16115 12136 10326 10332 19722 19722 0.030475560364720877 KFIKHWRMK 9 Unmodified _KFIKHWRMK_ 0 0 0 nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 MULTI-MSMS UPN48_class_I_Rep_3 7 637.3714599609375 2 637.371153 1272.72775 0.62628 0.00039917 -0.088627 -5.6488E-05 0.53765 0.00034268 637.3711039110642 101.71 0.12103 105.52 105.42 105.54 3.8153 18 16 2 0 0 0 0.48846 1 24039 24039 1.8442 0 1 122210 16116 5236 10327 10333 19723 19723 0.10229732024026816 KFIKLYEHY 9 Unmodified _KFIKLYEHY_ 0 0 0 L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|45|2|sense L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|45|2|sense L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|45|2|sense MSMS UPN47_class_I_Rep_2 3 620.842529296875 2 620.839874 1239.66519 NaN NaN NaN NaN NaN NaN NaN 35.697 1 39.108 38.608 39.608 3.4114 0 0 0 0.4007 1 6611 6611 0.52476 0.066424 1 16117 11045 10328 10334 19724 19724 0.054948644368323585 KFIKNCFT 8 Unmodified _KFIKNCFT_ 0 0 0 L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|95|1|anti-sense L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|95|1|anti-sense L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|95|1|anti-sense MSMS UPN48_class_I_Rep_1 5 500.5290222167969 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 30.667 1 34.209 33.709 34.709 3.542 0 0 0 0.40625 1 4434 4434 2.3027 0 1 16118 8852 10329 10335 19725 19725 0.021393194050460806 KFILLILSRFL 11 Unmodified _KFILLILSRFL_ 0 0 0 REV__L1MD1_dup2980|chr7:105068775-105070321:-|1.3700986960669967|0.0730468821179196|4.23|151.0|96|2|anti-sense REV__L1MD1_dup2980|chr7:105068775-105070321:-|1.3700986960669967|0.0730468821179196|4.23|151.0|96|2|anti-sense MSMS UPN48_class_I_Rep_1 5 454.9673156738281 3 454.967236 1361.87988 NaN NaN NaN NaN NaN NaN NaN 40.632 1 44.137 43.637 44.637 3.5048 0 0 0 0.38417 1 7314 7314 0.50596 0.09769 1 + 16119 27317 10330 10336 19726 19726 0.2134141125259248 KFILLNNV 8 Unmodified _KFILLNNV_ 0 0 0 L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 481.29901123046875 2 480.797478 959.580402 0.078705 3.7841E-05 0.16235 7.8058E-05 0.24106 0.0001159 480.7975034318798 64.088 0.34286 67.262 67.015 67.358 3.1741 38 25 2 0 0 0 0.82752 1 15268 15268 11.64 0 1 73126 16120 12932 10331 10337 19727 19727 0.0989953869089959 KFILLNNV 8 Unmodified _KFILLNNV_ 0 0 0 L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 481.3368835449219 2 480.797478 959.580402 0.079687 3.8313E-05 0.10197 4.9026E-05 0.18165 8.7339E-05 480.79751297370257 64.325 0.18997 67.499 67.377 67.567 3.1741 17 13 2 0 0 0 0.72333 1 15344 15344 7.9102 0 1 80412 16121 12932 10331 10337 19728 19728 0.0989953869089959 KFILLNNV 8 Unmodified _KFILLNNV_ 0 0 0 L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 480.79736328125 2 480.797478 959.580402 0.078705 3.7841E-05 0.16235 7.8058E-05 0.24106 0.0001159 480.7975034318798 64.088 0.34286 67.262 67.015 67.358 3.1741 38 25 2 0 0 0 0.72333 1 15332 15332 11.64 0 1 73126 16122 12932 10331 10337 19729 19729 0.0989953869089959 KFILLNNV 8 Unmodified _KFILLNNV_ 0 0 0 L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense L1ME4b_dup5495|chr4:87077502-87078193:-|1.0459548760857258|0.0102390949911236|6.67|151.0|40|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.797478 959.580402 0.13646 6.5609E-05 -0.35232 -0.00016939 -0.21586 -0.00010379 480.79744713795793 64.318 0.11278 67.574 67.503 67.615 3.2556 0.037483 -0.00028911 NaN 7.9102 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 34475 16123 12932 10331 10337 0.0989953869089959 KFINQQMRLLF 11 Unmodified _KFINQQMRLLF_ 0 0 0 REV__L1ME3G_dup3311|chr3:121831872-121832049:-|1.5175201432140977|0.1489070269007286|3.35|151.0|10|1|anti-sense REV__L1ME3G_dup3311|chr3:121831872-121832049:-|1.5175201432140977|0.1489070269007286|3.35|151.0|10|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.9388732910156 3 479.939352 1436.79623 -0.38367 -0.00018414 -0.57917 -0.00027797 -0.96284 -0.00046211 479.93915602004677 12.586 0.39384 16.036 15.974 16.368 3.45 90 42 3 0 0 0 0.68024 1 154 154 0.50596 0.051438 1 90973 + 16124 28196 10332 10338 19730 19730 0.0952993181324473 KFIQLWFYV 9 Unmodified _KFIQLWFYV_ 0 0 0 REV__L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|36|2|sense REV__L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 622.3480224609375 2 622.347335 1242.68012 0.3847 0.00023942 1.4432 0.00089815 1.8279 0.0011376 622.3482022811801 67.612 0.39 70.876 70.672 71.062 3.2636 54 33 2 0 0 0 0.48643 1 16360 16360 2.0598 0.21551 1 140590 + 16125 26052 10333 10339 19731 19731 0.06848356304840308 KFIQVINLQ 9 Unmodified _KFIQVINLQ_ 0 0 0 L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|36|3|sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|36|3|sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|36|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 551.8165893554688 2 551.834591 1101.65463 0.35196 0.00019422 -1.4498 -0.00080006 -1.0979 -0.00060583 551.8347669570734 58.886 0.31774 62.41 62.31 62.628 3.5231 25 22 2 0 0 0 0.28552 1 12795 12795 14.838 3.198 1 65590 16126 13424 10334 10340 19732 19732 0.10786881782405544 KFIWTYKK 8 Unmodified _KFIWTYKK_ 0 0 0 L1MA7_dup6914|chr13:109459044-109462489:-|2.9562791347242863|0.0339434797141451|6.44|143.0|122|3|sense L1MA7_dup6914|chr13:109459044-109462489:-|2.9562791347242863|0.0339434797141451|6.44|143.0|122|3|sense L1MA7_dup6914|chr13:109459044-109462489:-|2.9562791347242863|0.0339434797141451|6.44|143.0|122|3|sense MSMS UPN48_class_I_Rep_1 5 557.2843627929688 2 557.326402 1112.63825 NaN NaN NaN NaN NaN NaN NaN 66.264 1 69.716 69.216 70.216 3.4516 0 0 0 0.40625 1 15140 15140 2.3027 0 1 16127 10030 10335 10341 19733 19733 0.08643800616300723 KFKEKSIVLH 10 Unmodified _KFKEKSIVLH_ 0 0 0 nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6 nc|ENSG00000119121|Q9BX84-4|TRPM6 nc|ENSG00000119121|Q9BX84-4|TRPM6 MULTI-MSMS UPN47_class_I_Rep_1 2 614.8746948242188 2 614.874248 1227.73394 0.54079 0.00033252 0.25849 0.00015894 0.79927 0.00049145 614.8743019321124 108.65 0.41454 112.29 112.16 112.58 3.6355 128 43 4 0 0 0 0.4965 1 26745 26745 12.241 0 1 55475000 16128 2271 10336 10342 19734 19734 0.12918528736554435 KFKFTATQ 8 Unmodified _KFKFTATQ_ 0 0 0 REV__ENST00000379509.7_1_2:30863430-30863478:+|nuORF REV__ENST00000379509.7_1_2:30863430-30863478:+|nuORF MSMS UPN47_class_I_Rep_3 4 485.77197265625 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 25.372 1 28.723 28.223 29.223 3.3509 0 0 0 0.40753 1 3557 3557 0.6015 0 1 + 16129 22040 10337 10343 19735 19735 0.042383752771456784 KFKIYHQRK 9 Unmodified _KFKIYHQRK_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 624.3771362304688 2 624.372207 1246.72986 0.67645 0.00042235 1.1094 0.00069271 1.7859 0.0011151 624.3725571652952 96.215 0.21083 96.215 96.07 96.281 0 25 22 2 0 0 0 0.50088 1 23369 23369 0.52476 0.066424 1 252400 16130 8620 10338 10344 19736 19736 0.11636484033510897 KFKIYHQRK 9 Unmodified _KFKIYHQRK_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense MSMS UPN47_class_I_Rep_3 4 624.3732299804688 2 624.372207 1246.72986 NaN NaN NaN NaN NaN NaN NaN 92.436 1 95.839 95.339 96.339 3.4034 0 0 0 0.4007 1 23079 23079 0.52476 0.066424 1 16131 8620 10338 10344 19737 19737 0.11636484033510897 KFKIYHQRK 9 Unmodified _KFKIYHQRK_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 624.3715209960938 2 624.372207 1246.72986 0.42772 0.00026706 -0.99953 -0.00062408 -0.57181 -0.00035702 624.3715515160592 92.074 0.5062 95.7 95.52 96.026 3.626 119 71 2 0 0 0 0.48846 1 22123 22123 1.8442 0.51471 1 951930 16132 8620 10338 10344 19738 19738 0.11636484033510897 KFKIYHQRK 9 Unmodified _KFKIYHQRK_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|72|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 624.3720092773438 2 624.372207 1246.72986 0.49402 0.00030845 -0.38797 -0.00024224 0.10605 6.6212E-05 624.3717814378824 91.311 0.73558 95.066 94.694 95.43 3.7554 210 108 2 0 0 0 0.48846 1 21665 21665 1.8442 0.19162 1 13908000 16133 8620 10338 10344 19739 19739 0.11636484033510897 KFKKRKAF 8 Unmodified _KFKKRKAF_ 0 0 0 REV__ENST00000598520.1_1_19:39957119-39957491:+|nuORF REV__ENST00000598520.1_1_19:39957119-39957491:+|nuORF MSMS UPN47_class_I_Rep_3 4 526.8382568359375 2 526.840011 1051.66547 NaN NaN NaN NaN NaN NaN NaN 63.891 1 67.065 66.565 67.565 3.1741 0 0 0 0.40581 1 15243 15243 2.8892 2.0956 1 + 16134 21023 10339 10345 19740 19740 0.14170328947352573 KFKKYIRIIL 10 Unmodified _KFKKYIRIIL_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|79|2|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|79|2|sense MSMS UPN47_class_I_Rep_2 3 441.2973937988281 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 96.312 1 99.791 99.291 100.29 3.4791 0 0 0 0.53105 1 23671 23671 0.77653 0.27058 1 + 16135 25122 10340 10346 19741 19741 0.21696544455426192 KFKLFMIKTV 10 Unmodified _KFKLFMIKTV_ 0 0 0 L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 627.8861694335938 2 627.88577 1253.75699 0.42861 0.00026912 -0.88146 -0.00055345 -0.45284 -0.00028433 627.8852334332522 92.812 0.33328 96.436 96.234 96.567 3.624 57 45 2 0 0 0 0.54822 1 22292 22292 5.7319 2.4505 1 127880 16136 11965 10341 10347 19742 19742 0.1402583152967054 KFKLFMIKTV 10 Unmodified _KFKLFMIKTV_ 0 0 0 L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 627.88577 1253.75699 0.69388 0.00043568 -1.213 -0.00076162 -0.51912 -0.00032595 627.8850981980622 96.607 0.06752 96.607 96.581 96.649 0 0.11723 -0.00041836 NaN 5.7319 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 85686 16137 11965 10341 10347 0.1402583152967054 KFKLFMIKTV 10 Unmodified _KFKLFMIKTV_ 0 0 0 L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 627.88577 1253.75699 0.42861 0.00026912 -0.88146 -0.00055345 -0.45284 -0.00028433 627.8852334332522 92.812 0.33328 96.436 96.234 96.567 3.624 -0.053026 -2.0203E-06 NaN 5.7319 57 45 2 NaN NaN NaN NaN 0 NaN NaN 0 127880 16138 11965 10341 10347 0.1402583152967054 KFKLFMIKTV 10 Unmodified _KFKLFMIKTV_ 0 0 0 L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 627.88577 1253.75699 0.49517 0.00031091 -0.72019 -0.0004522 -0.22502 -0.00014129 627.8853828103132 92.662 0.1818 96.425 96.307 96.489 3.7629 -0.064206 0.00020049 NaN 5.7319 33 25 2 NaN NaN NaN NaN 0 NaN NaN 0 95251 16139 11965 10341 10347 0.1402583152967054 KFKRRLKKMSR 11 Unmodified _KFKRRLKKMSR_ 0 0 0 REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|16|1|sense REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|16|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.31182861328125 3 493.313523 1476.91874 0.26823 0.00013232 -2.8516 -0.0014067 -2.5834 -0.0012744 493.3120276153753 46.271 0.15701 46.271 46.221 46.378 0 35 17 3 0 0 0 0.64331 1 9490 9490 3.8459 1.2147 1 177800 + 16140 24021 10342 10348 19743 19743 0.19935813335314378 KFKVQQIP 8 Unmodified _KFKVQQIP_ 0 0 0 THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|85|3|anti-sense THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|85|3|anti-sense THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.3013000488281 2 494.302927 986.591301 0.24813 0.00012265 -3.9534 -0.0019542 -3.7052 -0.0018315 494.3013056661507 114.45 0.065094 118.1 118.07 118.13 3.6511 9 6 2 0 0 0 0.82752 1 27215 27215 0.69038 0.088878 1 22388 16141 32969 10343 10349 19744 19744 0.09746941065179726 KFLCGHTFSV 10 Unmodified _KFLCGHTFSV_ 0 0 0 L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|50|3|anti-sense L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|50|3|anti-sense L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_3 7 569.8209228515625 2 569.789327 1137.5641 NaN NaN NaN NaN NaN NaN NaN 37.132 1 40.795 40.295 41.295 3.663 0 0 0 0.53105 1 6222 6222 1.4819 0.15237 1 16142 10827 10344 10350 19745 19745 0.0008208946246668347 KFLDEPLQP 9 Unmodified _KFLDEPLQP_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|2|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|2|intron MSMS UPN48_class_I_Rep_3 7 543.7952880859375 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 39.909 1 43.56 43.06 44.06 3.6509 0 0 0 0.34878 1 7032 7032 8.1555 1.0538 1 + 16143 19041 10345 10351 19746 19746 0.03634609757477847 KFLFCLRQ 8 Unmodified _KFLFCLRQ_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|449|3|anti-sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|449|3|anti-sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|449|3|anti-sense MSMS UPN47_class_I_Rep_1 2 527.7847290039062 2 527.796955 1053.57936 NaN NaN NaN NaN NaN NaN NaN 24.819 1 28.568 28.068 29.068 3.7495 0 0 0 0.40625 1 3309 3309 2.3027 0.24298 1 16144 8195 10346 10352 19747 19747 0.05471001050341329 KFLFPSLEFII 11 Unmodified _KFLFPSLEFII_ 0 0 0 ENST00000281031.4_2_11:77779613-77779922:-|nuORF ENST00000281031.4_2_11:77779613-77779922:-|nuORF ENST00000281031.4_2_11:77779613-77779922:-|nuORF MSMS UPN48_class_I_Rep_2 6 451.9324645996094 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 89.887 1 93.634 93.134 94.134 3.7471 0 0 0 0.38417 1 21427 21427 2.6312 0.37851 1 16145 6029 10347 10353 19748 19748 0.1121345033632224 KFLKRMKKKR 10 Unmodified _KFLKRMKKKR_ 0 0 0 REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF MSMS UPN48_class_I_Rep_2 6 454.9671325683594 3 454.967465 1361.88056 NaN NaN NaN NaN NaN NaN NaN 42.324 1 46.081 45.581 46.581 3.7579 0 0 0 0.53105 1 7822 7822 0.15932 0.064481 1 + 16146 23008 10348 10354 19749 19749 0.21409927420631902 KFLKRMKKKR 10 Unmodified _KFLKRMKKKR_ 0 0 0 REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 455.3023376464844 3 454.967465 1361.88056 0.096308 4.3817E-05 0.17787 8.0925E-05 0.27418 0.00012474 454.9674395598766 42.621 0.47444 46.379 46.126 46.6 3.7579 66 43 2 0 0 0 0.84575 1 7864 7864 0.15932 0.064481 1 112800 + 16147 23008 10348 10354 19750 19750 0.21409927420631902 KFLKRMKKKR 10 Unmodified _KFLKRMKKKR_ 0 0 0 REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 454.9671325683594 3 454.967465 1361.88056 0.099597 4.5314E-05 0.37503 0.00017063 0.47463 0.00021594 454.9674562831024 42.159 0.45782 45.917 45.716 46.174 3.7579 76 43 3 0 0 0 0.84575 1 7822 7822 0.15932 0.064481 1 265350 + 16148 23008 10348 10354 19751 19751 0.21409927420631902 KFLLCLSLD 9 Unmodified _KFLLCLSLD_ 0 0 0 REV__L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|106|1|anti-sense REV__L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|106|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 526.29150390625 2 526.296453 1050.57835 0.3677 0.00019352 -4.3125 -0.0022697 -3.9448 -0.0020761 526.2931312689641 30.568 0.14268 34.11 34.01 34.152 3.542 18 13 2 0 0 0 0.46869 1 4404 4404 3.9444 0 1 64136 + 16149 24081 10349 10355 19752 19752 0.055087418907760366 KFLLCLSLD 9 Unmodified _KFLLCLSLD_ 0 0 0 REV__L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|106|1|anti-sense REV__L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|106|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.296453 1050.57835 0.34982 0.00018411 -7.7555 -0.0040817 -7.4057 -0.0038976 526.2918534452172 30.602 0.040442 34.317 34.284 34.324 3.7146 0.10316 -0.0012726 NaN 3.9444 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 31079 + 16150 24081 10349 10355 0.055087418907760366 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.284423828125 3 511.284454 1530.83153 0.27481 0.00014051 -0.84763 -0.00043338 -0.57282 -0.00029287 511.2838455627178 35.971 0.39387 39.481 39.395 39.789 3.5101 60 39 2 0 0 0 0.65439 2 5976 5976;6007 2.8433 0 1 126930 + 16151 28361 10350 10356 19753;19754 19753 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 511.2348937988281 3 511.284454 1530.83153 0.27144 0.00013878 -0.57306 -0.000293 -0.30162 -0.00015421 511.28409800931746 36.792 0.13428 40.299 40.238 40.373 3.507 15 11 2 0 0 0 22.551 1 6192 6192 2.8433 0 1 75495 + 16152 28361 10350 10356 19755 19755 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2837219238281 3 511.284454 1530.83153 0.29828 0.0001525 -1.125 -0.00057521 -0.82674 -0.0004227 511.2837132972635 35.601 0.45032 39.288 39.122 39.572 3.6877 92 42 3 0 0 0 0.62008 2 5858 5858;5898 4.7159 1.8726 1 147190 + 16153 28361 10350 10356 19756;19757 19756 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2841796875 3 511.284454 1530.83153 0.29557 0.00015112 -0.89894 -0.00045962 -0.60338 -0.0003085 511.2839280981783 36.039 0.2155 39.727 39.643 39.858 3.6877 32 25 2 0 0 0 0.60697 2 6012 6012;6048 5.0475 0 1 118560 + 16154 28361 10350 10356 19758;19759 19758 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2832946777344 3 511.284454 1530.83153 0.29414 0.00015039 -1.0165 -0.00051973 -0.72238 -0.00036934 511.61825336588123 36.293 0.25895 39.981 39.868 40.127 3.6877 42 31 2 0 0 0 0.62008 1 6079 6079 4.7159 0 1 105570 + 16155 28361 10350 10356 19760 19760 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.2841796875 3 511.284454 1530.83153 NaN NaN NaN NaN NaN NaN NaN 35.889 1 39.577 39.077 40.077 3.6877 0 0 0 0.38417 1 5975 5975 2.6312 0 1 + 16156 28361 10350 10356 19761 19761 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.2344055175781 3 511.284454 1530.83153 NaN NaN NaN NaN NaN NaN NaN 37.442 1 41.144 40.644 41.644 3.7021 0 0 0 0.38417 1 6409 6409 2.8433 0 1 + 16157 28361 10350 10356 19762 19762 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 511.2349853515625 3 511.284454 1530.83153 0.29231 0.00014945 -0.83369 -0.00042625 -0.54138 -0.0002768 511.2840112130215 36.526 0.42257 40.229 40.046 40.469 3.7021 73 49 2 0 0 0 22.551 1 6201 6201 4.7159 0 1 155340 + 16158 28361 10350 10356 19763 19763 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 511.2347106933594 3 511.284454 1530.83153 0.20166 0.00010311 -0.71827 -0.00036724 -0.5166 -0.00026413 511.2841230186389 36.86 0.38836 40.523 40.312 40.701 3.663 61 41 2 0 0 0 22.551 1 6112 6112 4.7159 0 1 81178 + 16159 28361 10350 10356 19764 19764 0.08734917612719073 KFLLFFFFFLY 11 Unmodified _KFLLFFFFFLY_ 0 0 0 REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense REV__L1MEc_dup11825|chr10:43147627-43149094:-|1.6624235285176885|0.0532543942687742|4.96|151.0|92|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 511.284454 1530.83153 0.20017 0.00010234 -0.76584 -0.00039156 -0.56567 -0.00028922 511.2839895286219 35.875 0.25431 39.542 39.44 39.694 3.6667 -0.041217 8.5423E-05 NaN 5.0475 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 142820 + 16160 28361 10350 10356 0.08734917612719073 KFLLNLNV 8 Unmodified _KFLLNLNV_ 0 0 0 Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.7976989746094 2 480.797478 959.580402 0.11959 5.7496E-05 -0.16098 -7.7398E-05 -0.041392 -1.9901E-05 480.79737574025023 63.663 0.46658 67.019 66.845 67.312 3.3557 66 40 2 0 0 0 0.82752 2 15042 15042;15082 20.454 0 1 95518 16161 438 10351 10357 19765;19766 19765 0.09899538690888221 KFLLNLNV 8 Unmodified _KFLLNLNV_ 0 0 0 Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 480.79736328125 2 480.797478 959.580402 NaN NaN NaN NaN NaN NaN NaN 64.181 1 67.356 66.856 67.856 3.1741 0 0 0 0.3903 1 15332 15332 11.64 0 1 16162 438 10351 10357 19767 19767 0.09899538690888221 KFLLNLNV 8 Unmodified _KFLLNLNV_ 0 0 0 Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|15|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 480.797478 959.580402 0.11959 5.7496E-05 -0.16098 -7.7398E-05 -0.041392 -1.9901E-05 480.79737574025023 63.663 0.46658 67.019 66.845 67.312 3.3557 -0.12138 -0.0001263 NaN 20.454 66 40 2 NaN NaN NaN NaN 0 NaN NaN 0 95518 16163 438 10351 10357 0.09899538690888221 KFLLPDNQEE 10 Unmodified _KFLLPDNQEE_ 0 0 0 HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|18|1|sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|18|1|sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|18|1|sense MSMS UPN47_class_I_Rep_1 2 616.8109741210938 2 616.81151 1231.60847 NaN NaN NaN NaN NaN NaN NaN 46.037 1 49.736 49.236 50.236 3.6999 0 0 0 0.53105 1 9727 9727 1.4819 0 1 16164 8188 10352 10358 19768 19768 0.0019277208964467718 KFLMLAKS 8 Unmodified _KFLMLAKS_ 0 0 0 REV__Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|4|1|sense REV__Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 469.3293762207031 2 469.280606 936.546659 NaN NaN NaN NaN NaN NaN NaN 38.123 1 41.839 41.339 42.339 3.7164 0 0 0 0.40643 1 6605 6605 2.0598 0 1 + 16165 32576 10353 10359 19769 19769 0.0758479392748086 KFLNDMLYR 9 Unmodified _KFLNDMLYR_ 0 0 0 REV__ENSG00000140299|ENST00000607373|BNIP2 REV__ENSG00000140299|ENST00000607373|BNIP2 MSMS UPN48_class_I_Rep_3 7 600.5624389648438 2 600.315709 1198.61686 NaN NaN NaN NaN NaN NaN NaN 34.829 1 38.501 38.001 39.001 3.6721 0 0 0 0.39598 1 5575 5575 1.6526 0.17072 1 + 16166 19335 10354 10360 19770 19770 0.025500475253011246 KFLPTASSN 9 Unmodified _KFLPTASSN_ 0 0 0 MLT1G_dup2395|chr17:42365038-42365533:+|1.50434674724505|0.0352816468535107|5.41|151.0|19|3|sense MLT1G_dup2395|chr17:42365038-42365533:+|1.50434674724505|0.0352816468535107|5.41|151.0|19|3|sense MLT1G_dup2395|chr17:42365038-42365533:+|1.50434674724505|0.0352816468535107|5.41|151.0|19|3|sense MSMS UPN48_class_I_Rep_3 7 482.8197326660156 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 58.225 1 61.756 61.256 62.256 3.5317 0 0 0 0.39598 1 12597 12597 1.6526 0.17072 1 16167 16405 10355 10361 19771 19771 0.019334810348595965 KFLVLVIYY 9 Unmodified _KFLVLVIYY_ 0 0 0 L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|382|3|anti-sense L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|382|3|anti-sense L1MA8_dup8818|chr13:109554102-109559559:+|1.870141830402009|0.0291905463774207|6.0|141.0|382|3|anti-sense MSMS UPN47_class_I_Rep_1 2 579.3495483398438 2 579.352086 1156.68962 NaN NaN NaN NaN NaN NaN NaN 78.834 1 82.28 81.78 82.78 3.4456 0 0 0 0.381 1 19614 19614 5.2307 2.9279 1 16168 10071 10356 10362 19772 19772 0.11754124590356696 KFLVMLWN 8 Unmodified _KFLVMLWN_ 0 0 0 REV__L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|118|3|anti-sense REV__L1MEf_dup11472|chr21:14044682-14046285:+|1.048068550495648|0.044211984958052|4.57|149.0|118|3|anti-sense MSMS UPN48_class_I_Rep_2 6 525.794677734375 2 525.793881 1049.57321 NaN NaN NaN NaN NaN NaN NaN 30.315 1 33.95 33.45 34.45 3.6351 0 0 0 0.4044 1 4418 4418 4.756 0.81161 1 + 16169 28605 10357 10363 19773 19773 0.05040482818822056 KFMLVYLI 8 Unmodified _KFMLVYLI_ 0 0 0 L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|144|3|anti-sense L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|144|3|anti-sense L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|144|3|anti-sense MSMS UPN47_class_I_Rep_2 3 513.8067016601562 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 81.248 1 84.632 84.132 85.132 3.3839 0 0 0 0.40746 1 20233 20233 0.69038 0 1 16170 10558 10358 10364 19774 19774 0.08658537621408868 KFMRQERN 8 Unmodified _KFMRQERN_ 0 0 0 REV__nc|ENSG00000141644|Q9UIS9-4|MBD1 REV__nc|ENSG00000141644|Q9UIS9-4|MBD1 MSMS UPN46_class_I_Rep_3 1 554.7854614257812 2 554.78765 1107.56075 NaN NaN NaN NaN NaN NaN NaN 32.565 1 32.565 32.065 33.065 0 0 0 0 0.4044 1 5588 5588 4.756 0.81161 1 + 16171 19387 10359 10365 19775 19775 0.011268394084936517 KFMSFTCY 8 Unmodified _KFMSFTCY_ 0 0 0 REV__Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|2|1|sense REV__Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 513.7269897460938 2 513.724806 1025.43506 NaN NaN NaN NaN NaN NaN NaN 70.512 1 73.972 73.472 74.472 3.4598 0 0 0 0.40581 1 16437 16437 2.8892 0 1 + 16172 32365 10360 10366 19776 19776 -0.0766400849195179 KFNKFKKTKT 10 Unmodified _KFNKFKKTKT_ 0 0 0 L1M4b_dup409|chr2:99315365-99316132:-|1.571807090020099|0.2824116377342518|2.48|151.0|3|1|sense L1M4b_dup409|chr2:99315365-99316132:-|1.571807090020099|0.2824116377342518|2.48|151.0|3|1|sense L1M4b_dup409|chr2:99315365-99316132:-|1.571807090020099|0.2824116377342518|2.48|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 635.3858032226562 2 635.387522 1268.76049 NaN NaN NaN NaN NaN NaN NaN 78.3 1 81.729 81.229 82.229 3.4289 0 0 0 0.53105 1 19462 19462 1.1933 0.12188 1 16173 9023 10361 10367 19777 19777 0.1368621762787825 KFNPVSFTW 9 Unmodified _KFNPVSFTW_ 0 0 0 ENSG00000124702|ENST00000326974|KLHDC3 ENSG00000124702|ENST00000326974|KLHDC3 ENSG00000124702|ENST00000326974|KLHDC3 MSMS UPN48_class_I_Rep_1 5 563.2902221679688 2 563.290017 1124.56548 NaN NaN NaN NaN NaN NaN NaN 68.52 1 71.972 71.472 72.472 3.4517 0 0 0 0.25702 1 15828 15828 13.042 4.8869 1 16174 2482 10362 10368 19778 19778 0.008180468229056714 KFPLAVMAGF 10 Unmodified _KFPLAVMAGF_ 0 0 0 L1MB5_dup4342|chrX:2653448-2654103:+|2.0084201705812377|0.0993047863604143|4.34|151.0|6|1|sense L1MB5_dup4342|chrX:2653448-2654103:+|2.0084201705812377|0.0993047863604143|4.34|151.0|6|1|sense L1MB5_dup4342|chrX:2653448-2654103:+|2.0084201705812377|0.0993047863604143|4.34|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 540.813232421875 2 540.799163 1079.58377 NaN NaN NaN NaN NaN NaN NaN 49.504 1 53.029 52.529 53.529 3.5246 0 0 0 0.53105 1 10011 10011 7.2892 0.56607 1 16175 10620 10363 10369 19779 19779 0.047164654732569034 KFPLVWDQWFE 11 Unmodified _KFPLVWDQWFE_ 0 0 0 REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|130|2|anti-sense REV__L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|130|2|anti-sense MSMS UPN46_class_I_Rep_3 1 498.9203796386719 3 498.918722 1493.73434 NaN NaN NaN NaN NaN NaN NaN 98.798 1 98.798 98.298 99.298 0 0 0 0 0.38417 1 24058 24058 0.45452 0 1 + 16176 24794 10364 10370 19780 19780 0.007219036657033939 KFPMALIK 8 Unmodified _KFPMALIK_ 0 0 0 REV__L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|86|2|sense REV__L1PA7_dup4562|chr5:116166485-116171982:+|5.300332375568491|0.1009582264427714|5.71|151.0|86|2|sense MSMS UPN46_class_I_Rep_3 1 474.2906494140625 2 474.290974 946.567395 NaN NaN NaN NaN NaN NaN NaN 89.111 1 89.111 88.611 89.611 0 0 0 0 0.40746 1 21428 21428 0.69038 0 1 + 16177 30109 10365 10371 19781 19781 0.09197384307151424 KFPQCFEVTF 10 Unmodified _KFPQCFEVTF_ 0 0 0 REV__L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|18|1|sense REV__L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|18|1|sense MSMS UPN48_class_I_Rep_1 5 622.8406982421875 2 623.302267 1244.58998 NaN NaN NaN NaN NaN NaN NaN 67.755 1 71.206 70.706 71.706 3.4517 0 0 0 0.53105 1 15597 15597 1.6526 0 1 + 16178 26466 10366 10372 19782 19782 -0.02253061085889385 KFPRGKVKKK 10 Unmodified _KFPRGKVKKK_ 0 0 0 REV__HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|24|2|sense REV__HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|24|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 608.9072265625 2 608.40605 1214.79755 0.48893 0.00029747 -0.56336 -0.00034275 -0.074436 -4.5288E-05 608.4055067990332 108.23 0.41231 111.91 111.72 112.13 3.6746 107 46 3 0 0 0 0.56333 1 25681 25681 1.4819 0.15237 1 5548500 + 16179 23469 10367 10373 19783 19783 0.19873933964299795 KFPRKIPT 8 Unmodified _KFPRKIPT_ 0 0 0 L1M5_dup7481|chr2:171768637-171769301:+|1.854654347818568|0.1039527314427746|4.16|151.0|8|1|sense L1M5_dup7481|chr2:171768637-171769301:+|1.854654347818568|0.1039527314427746|4.16|151.0|8|1|sense L1M5_dup7481|chr2:171768637-171769301:+|1.854654347818568|0.1039527314427746|4.16|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 493.93402099609375 2 493.810919 985.607286 NaN NaN NaN NaN NaN NaN NaN 49.943 1 49.943 49.443 50.443 0 0 0 0 0.40746 1 10523 10523 0.69038 0 1 16180 9208 10368 10374 19784 19784 0.11390647302073376 KFPSISSLLK 10 Unmodified _KFPSISSLLK_ 0 0 0 L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|65|2|anti-sense L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|65|2|anti-sense L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|65|2|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3428344726562 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 78.402 1 82.024 81.524 82.524 3.6216 0 0 0 0.53105 1 18558 18558 5.2969 2.0156 1 16181 11069 10369 10375 19785 19785 0.11535748579603933 KFPVKKES 8 Unmodified _KFPVKKES_ 0 0 0 REV__Tigger1_dup9033|chr12:32237180-32238663:+|1.3110158367889355|0.0256202893975063|5.68|151.0|22|2|sense REV__Tigger1_dup9033|chr12:32237180-32238663:+|1.3110158367889355|0.0256202893975063|5.68|151.0|22|2|sense MSMS UPN47_class_I_Rep_1 2 481.78594970703125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 28.183 1 31.949 31.449 32.449 3.7662 0 0 0 0.40625 1 4303 4303 2.3027 0 1 + 16182 32390 10370 10376 19786 19786 0.07734948311235712 KFQKQLQQKQK 11 Unmodified _KFQKQLQQKQK_ 0 0 0 L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|117|2|sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|117|2|sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|117|2|sense MSMS UPN46_class_I_Rep_3 1 477.9521789550781 3 477.952537 1430.83578 NaN NaN NaN NaN NaN NaN NaN 36.325 1 36.325 35.825 36.825 0 0 0 0 0.38417 1 6721 6721 0.50596 0 1 16183 13607 10371 10377 19787 19787 0.13759775088306014 KFQVMYRRIL 10 Unmodified _KFQVMYRRIL_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS UPN48_class_I_Rep_2 6 451.93243408203125 3 451.932309 1352.7751 0.15559 7.0316E-05 0.82894 0.00037462 0.98453 0.00044494 451.9326159002717 91.568 0.19263 95.324 95.285 95.478 3.7554 43 26 2 0 0 0 0.56454 1 21807 21807 0.62683 0 1 438660 16184 2942 10372 10378 19788 19788 0.11281966504407137 KFQVWRLVTNF 11 Unmodified _KFQVWRLVTNF_ 0 0 0 nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000290730.11_1_22:24179058-24180975:-|nuORF nc|ENSG00000099958|Q96Q80-5|DERL3 nc|ENSG00000099958|Q96Q80-5|DERL3 MSMS UPN48_class_I_Rep_3 7 479.9391174316406 3 479.938228 1436.79285 NaN NaN NaN NaN NaN NaN NaN 12.814 1 16.345 15.845 16.845 3.5314 0 0 0 0.38417 1 142 142 0.50596 0.34663 1 16185 1456 10373 10379 19789 19789 0.09193005030874701 KFRHPPPQL 9 Unmodified _KFRHPPPQL_ 0 0 0 REV__AluSc_dup1549|chr1:113944473-113944758:-|1.371984609351049|0.0179974243708632|6.25|151.0|17|3|anti-sense REV__AluSc_dup1549|chr1:113944473-113944758:-|1.371984609351049|0.0179974243708632|6.25|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_1 5 560.3252563476562 2 560.324725 1118.6349 NaN NaN NaN NaN NaN NaN NaN 24.033 1 27.598 27.098 28.098 3.5655 0 0 0 0.4007 1 2591 2591 0.52476 0 1 + 16186 17076 10374 10380 19790 19790 0.08032550562325014 KFRIFWVK 8 Unmodified _KFRIFWVK_ 0 0 0 REV__Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|39|2|sense REV__Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|39|2|sense MSMS UPN47_class_I_Rep_3 4 562.8128662109375 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 82.361 1 85.698 85.198 86.198 3.337 0 0 0 0.40746 1 20641 20641 0.69038 0 1 + 16187 32411 10375 10381 19791 19791 0.11379213090117446 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN46_class_I_Rep_3 1 472.3376770019531 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 99.793 1 99.793 99.293 100.29 0 0 0 0 0.38417 1 24319 24319 0 0 1 + 16188 25661 10376 10382 19792 19792 0.300724706805795 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN47_class_I_Rep_2 3 472.337646484375 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 72.314 1 75.611 75.111 76.111 3.2971 0 0 0 0.38417 1 17720 17720 0.094841 0.094841 1 + 16189 25661 10376 10382 19793 19793 0.300724706805795 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN47_class_I_Rep_2 3 472.3382873535156 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 75.999 1 79.32 78.82 79.82 3.3216 0 0 0 0.38417 1 18793 18793 0.094841 0.094841 1 + 16190 25661 10376 10382 19794 19794 0.300724706805795 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN48_class_I_Rep_1 5 472.2581787109375 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 66.05 1 69.502 69.002 70.002 3.4516 0 0 0 0.38417 1 15074 15074 0 0 1 + 16191 25661 10376 10382 19795 19795 0.300724706805795 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN48_class_I_Rep_1 5 472.6260070800781 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 85.384 1 88.99 88.49 89.49 3.6059 0 0 0 0.38417 1 20421 20421 0 0 1 + 16192 25661 10376 10382 19796 19796 0.300724706805795 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN48_class_I_Rep_2 6 472.62713623046875 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 83.93 1 87.611 87.111 88.111 3.6814 0 0 0 0.38417 1 19964 19964 0.094841 0 1 + 16193 25661 10376 10382 19797 19797 0.300724706805795 KFRKKKKLILI 11 Unmodified _KFRKKKKLILI_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|57|2|sense MSMS UPN48_class_I_Rep_3 7 472.338134765625 3 472.337663 1413.99116 NaN NaN NaN NaN NaN NaN NaN 71.95 1 75.477 74.977 75.977 3.5266 0 0 0 0.38417 1 16742 16742 0.094841 0.011491 1 + 16194 25661 10376 10382 19798 19798 0.300724706805795 KFRKTWTI 8 Unmodified _KFRKTWTI_ 0 0 0 REV__nc|ENSG00000156515|P19367-4|HK1 REV__nc|ENSG00000156515|P19367-4|HK1 MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 40.953 1 40.953 40.453 41.453 0 0 0 0 0.40746 1 7985 7985 0.69038 0 1 + 16195 19797 10377 10383 19799 19799 0.09258032330808419 KFRNHDFE 8 Unmodified _KFRNHDFE_ 0 0 0 REV__ENSG00000183323.13,CCDC125,chr5,-,I7.1,69303930,69306816|51|8.63|4|intron REV__ENSG00000183323.13,CCDC125,chr5,-,I7.1,69303930,69306816|51|8.63|4|intron MSMS UPN48_class_I_Rep_3 7 546.7633056640625 2 546.764697 1091.51484 NaN NaN NaN NaN NaN NaN NaN 117.35 1 120.97 120.47 121.47 3.6124 0 0 0 0.40604 1 27920 27920 2.5775 0 1 + 16196 20781 10378 10384 19800 19800 -0.02725482502091836 KFRNSIAFW 9 Unmodified _KFRNSIAFW_ 0 0 0 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 MSMS UPN47_class_I_Rep_2 3 584.8175659179688 2 584.816733 1167.61891 NaN NaN NaN NaN NaN NaN NaN 23.69 1 27.155 26.655 27.655 3.4655 0 0 0 0.40038 1 3021 3021 0.6015 0 1 + 16197 19976 10379 10385 19801 19801 0.04180844325401267 KFRPPPHQL 9 Unmodified _KFRPPPHQL_ 0 0 0 REV__AluSg4_dup3208|chr8:100933079-100933379:+|1.166756520102404|0.0480158975961809|4.6|151.0|13|1|anti-sense REV__AluSg4_dup3208|chr8:100933079-100933379:+|1.166756520102404|0.0480158975961809|4.6|151.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3234252929688 2 560.324725 1118.6349 0.48757 0.0002732 -1.1675 -0.0006542 -0.67997 -0.000381 560.3238821781297 70.287 0.26071 73.823 73.702 73.963 3.5359 48 25 3 0 0 0 0.46434 1 16374 16374 4.3292 0.73274 1 234490 + 16198 17100 10380 10386 19802 19802 0.08032550562325014 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29571533203125 2 496.295436 990.57632 0.30699 0.00015236 0.066725 3.3115E-05 0.37371 0.00018547 496.29549356333604 110.2 0.27576 110.2 110.11 110.39 0 72 25 3 0 0 0 0.82752 1 27133 27133 5.2307 0.47466 1 6388300 + 16199 17139 10381 10387 19803 19803 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.29559326171875 2 496.295436 990.57632 0.27999 0.00013896 0.4569 0.00022676 0.73689 0.00036571 496.2956185137711 108.73 1.7835 112.37 112.21 113.99 3.6355 412 213 2 0 0 0 0.82752 1 26945 26945 2.3027 2.3027 1 206030000 + 16200 17139 10381 10387 19804 19804 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 496.295436 990.57632 0.30699 0.00015236 0.066725 3.3115E-05 0.37371 0.00018547 496.29549356333604 110.2 0.27576 110.2 110.11 110.39 0 0 0 NaN 5.2307 72 25 3 NaN NaN NaN NaN 0 NaN NaN 0 6388300 + 16201 17139 10381 10387 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 496.295436 990.57632 0.44274 0.00021973 0.44215 0.00021944 0.88489 0.00043917 496.29557487254084 108.76 0.59566 112.3 112.11 112.7 3.5333 -0.091239 -3.4369E-05 NaN 2.3027 245 68 4 NaN NaN NaN NaN 0 NaN NaN 0 205010000 + 16202 17139 10381 10387 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 496.295436 990.57632 0.28172 0.00013982 0.54066 0.00026833 0.82238 0.00040814 496.29562172011805 108.77 0.63731 112.3 112.09 112.73 3.5382 -0.083795 6.341E-05 NaN 2.3027 262 72 5 NaN NaN NaN NaN 0 NaN NaN 0 197510000 + 16203 17139 10381 10387 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 496.295436 990.57632 0.17551 8.7107E-05 0.51639 0.00025628 0.69191 0.00034339 496.29562000209273 108.75 0.75479 112.38 112.2 112.95 3.6321 -0.0067138 3.9325E-05 NaN 2.3027 286 90 4 NaN NaN NaN NaN 0 NaN NaN 0 103380000 + 16204 17139 10381 10387 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 496.295436 990.57632 0.28015 0.00013904 0.51445 0.00025532 0.7946 0.00039436 496.29559271911666 108.77 2.1068 112.45 112.29 114.4 3.6746 0.05732 3.7396E-05 NaN 2.3027 530 269 5 NaN NaN NaN NaN 0 NaN NaN 0 136890000 + 16205 17139 10381 10387 0.08065493987851369 KFRPPPLH 8 Unmodified _KFRPPPLH_ 0 0 0 REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense REV__AluSx_dup41288|chr7:5400329-5400622:+|1.742999445745983|0.0127141151356179|7.1|150.0|19|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 496.295436 990.57632 0.25195 0.00012504 0.37725 0.00018723 0.6292 0.00031227 496.2955514398696 108.86 0.33006 112.53 112.51 112.84 3.6751 0.14398 -9.8785E-05 NaN 2.3027 67 36 2 NaN NaN NaN NaN 0 NaN NaN 0 73250000 + 16206 17139 10381 10387 0.08065493987851369 KFRSSERWT 9 Unmodified _KFRSSERWT_ 0 0 0 nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7 nc|ENSG00000138468|Q9BQF6-4|SENP7 nc|ENSG00000138468|Q9BQF6-4|SENP7 MULTI-MSMS UPN48_class_I_Rep_3 7 598.8118286132812 2 598.812179 1195.60981 0.59467 0.0003561 -1.4741 -0.00088273 -0.87946 -0.00052663 598.8113509656824 68.699 0.14332 72.208 72.111 72.254 3.5093 13 10 2 0 0 0 0.48846 1 15760 15760 1.8442 0.36234 1 117230 16207 3092 10382 10388 19805 19805 0.019824509690806735 KFRYLERLLIL 11 Unmodified _KFRYLERLLIL_ 0 0 0 ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENST00000555815.5_1_15:25924490-25961922:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 488.640869140625 3 488.641412 1462.90241 0.27141 0.00013262 -0.94299 -0.00046078 -0.67158 -0.00032816 488.6407238463547 64.031 0.62931 67.489 66.985 67.614 3.4578 59 46 2 0 0 0 0.68024 1 14349 14349 0.50596 0.051438 1 412930 16208 5567 10383 10389 19806 19806 0.18947010650231277 KFRYLERLLIL 11 Unmodified _KFRYLERLLIL_ 0 0 0 ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENST00000555815.5_1_15:25924490-25961922:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 488.641412 1462.90241 0.29489 0.0001441 -0.74831 -0.00036565 -0.45342 -0.00022156 488.6404767064439 64.262 0.053726 67.737 67.698 67.752 3.4743 0.029523 0.0001638 NaN 0.50596 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 60310 16209 5567 10383 10389 0.18947010650231277 KFRYLERLLIL 11 Unmodified _KFRYLERLLIL_ 0 0 0 ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENST00000555815.5_1_15:25924490-25961922:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 488.641412 1462.90241 0.26477 0.00012938 1.4878 0.000727 1.7526 0.00085638 488.6405776435809 64.388 0.058746 67.896 67.88 67.939 3.5083 0.18872 0.0034418 NaN 0.50596 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 31311 16210 5567 10383 10389 0.18947010650231277 KFSDLKNNK 9 Unmodified _KFSDLKNNK_ 0 0 0 REV__L1MB7_dup2214|chr2:55554354-55554998:-|1.3526517733473615|0.3811488751699091|1.83|151.0|4|1|sense REV__L1MB7_dup2214|chr2:55554354-55554998:-|1.3526517733473615|0.3811488751699091|1.83|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 547.3038330078125 2 547.303655 1092.59276 NaN NaN NaN NaN NaN NaN NaN 89.595 1 93.342 92.842 93.842 3.7471 0 0 0 0.38784 1 21354 21354 3.5965 0 1 + 16211 26224 10384 10390 19807 19807 0.050165303632638825 KFSKELYQF 9 Unmodified _KFSKELYQF_ 0 0 0 MLT1G1-int_dup251|chr14:102644492-102645329:-|2.530982933844549|0.0099178088916289|8.0|151.0|3|1|sense MLT1G1-int_dup251|chr14:102644492-102645329:-|2.530982933844549|0.0099178088916289|8.0|151.0|3|1|sense MLT1G1-int_dup251|chr14:102644492-102645329:-|2.530982933844549|0.0099178088916289|8.0|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 595.316162109375 2 595.316232 1188.61791 0.42945 0.00025566 -0.16549 -9.8516E-05 0.26396 0.00015714 595.3160401120086 42.138 0.43008 45.646 45.384 45.814 3.5079 58 42 2 0 0 0 0.49026 1 7697 7697 1.6526 0 1 109530 16212 16416 10385 10391 19808 19808 0.03114585165826611 KFSMKRLTAG 10 Unmodified _KFSMKRLTAG_ 0 0 0 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 MSMS UPN48_class_I_Rep_1 5 569.8253173828125 2 569.823701 1137.63285 NaN NaN NaN NaN NaN NaN NaN 43.633 1 47.144 46.644 47.644 3.5103 0 0 0 0.53105 1 8211 8211 1.1933 0.39971 1 16213 5046 10386 10392 19809 19809 0.06953753762218184 KFSNVTMLF 9 Oxidation (M) _KFSNVTM(Oxidation (M))LF_ KFSNVTM(1)LF KFSNVTM(78)LF 0 0 1 ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 MULTI-MSMS UPN48_class_I_Rep_1 5 551.7837524414062 2 551.78371 1101.55287 0.64454 0.00035565 -0.30091 -0.00016604 0.34364 0.00018961 551.783422237973 59.781 0.84217 63.261 62.889 63.731 3.4801 155 63 3 0 0 0 0.0055684 2 13172 13134;13172 78.06 26.431 1 600700 16214 4084 10387 10393 19810;19811 19811 132 0.006152673683345711 KFSNVTMLF 9 Oxidation (M) _KFSNVTM(Oxidation (M))LF_ KFSNVTM(1)LF KFSNVTM(87)LF 0 0 1 ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 MULTI-MSMS UPN48_class_I_Rep_2 6 551.7835693359375 2 551.78371 1101.55287 0.5696 0.00031429 -0.18586 -0.00010255 0.38374 0.00021174 551.7834236298585 59.71 0.82279 63.197 62.822 63.644 3.4868 161 64 3 0 0 0 0.0070648 3 13140 13100;13140;13177 87.258 27.184 1 871970 16215 4084 10387 10393 19812;19813;19814 19813 132 0.006152673683345711 KFSNVTMLF 9 Oxidation (M) _KFSNVTM(Oxidation (M))LF_ KFSNVTM(1)LF KFSNVTM(78)LF 0 0 1 ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 MULTI-MSMS UPN48_class_I_Rep_3 7 551.7837524414062 2 551.78371 1101.55287 0.36704 0.00020253 -0.019872 -1.0965E-05 0.34717 0.00019156 551.7835831796745 59.57 0.95295 63.087 62.622 63.575 3.5169 158 71 3 0 0 0 0.0055684 3 12968 12968;13008;13046 78.06 26.451 1 610680 16216 4084 10387 10393 19815;19816;19817 19815 132 0.006152673683345711 KFSQKKTN 8 Unmodified _KFSQKKTN_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|30|2|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|30|2|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|30|2|sense MSMS UPN47_class_I_Rep_3 4 490.78179931640625 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 112.28 1 115.8 115.3 116.3 3.5207 0 0 0 0.40659 1 27567 27567 1.8442 0 1 16217 12985 10388 10394 19818 19818 0.05448876163097793 KFSRLSEYK 9 Unmodified _KFSRLSEYK_ 0 0 0 L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|86|3|sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|86|3|sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|86|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.8065185546875 2 579.319306 1156.62406 0.42899 0.00024852 -0.41795 -0.00024212 0.011043 6.3974E-06 579.319156835125 40.343 0.71416 43.848 43.593 44.307 3.5048 97 64 2 0 0 0 0.17897 1 7263 7263 22.736 2.2827 1 126440 16218 15449 10389 10395 19819 19819 0.05201103397371298 KFSRLSEYK 9 Unmodified _KFSRLSEYK_ 0 0 0 L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|86|3|sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|86|3|sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|86|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.8063354492188 2 579.319306 1156.62406 0.39728 0.00023015 -0.40728 -0.00023595 -0.010002 -5.7946E-06 579.3190699518311 40.211 0.70823 43.862 43.399 44.107 3.6509 118 68 2 0 0 0 0.17897 1 7166 7166 22.736 1.1993 1 147070 16219 15449 10389 10395 19820 19820 0.05201103397371298 KFTALFRRK 9 Unmodified _KFTALFRRK_ 0 0 0 ENSG00000147896|ENST00000276943|IFNK ENSG00000147896|ENST00000276943|IFNK ENSG00000147896|ENST00000276943|IFNK MSMS UPN47_class_I_Rep_1 2 583.8602905273438 2 583.861475 1165.7084 NaN NaN NaN NaN NaN NaN NaN 89.593 1 93.267 92.767 93.767 3.6738 0 0 0 0.39598 1 22402 22402 1.6526 1.1279 1 16220 3489 10390 10396 19821 19821 0.13217099004759802 KFTRKKQPHQK 11 Unmodified _KFTRKKQPHQK_ 0 0 0 L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|80|2|sense;L1PA7_dup7136|chr9:5114958-5116074:+|1.0911925073310131|0.1417025879486993|2.94|151.0|18|2|sense;L1PA5_dup2654|chr4:53095724-53098569:-|1.2151563509698995|0.0613984213669148|4.31|151.0|30|1|sense;L1PA6_dup493|chr2:9926875-9929142:-|1.0220318981374297|0.1682851413858475|2.6|151.0|59|3|sense;L1PA5_dup2779|chr4:71012179-71017935:+|1.2668742847391803|0.0427819807789749|4.89|151.0|161|3|sense;L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|21|1|sense;L1PA5_dup518|chr1:174895444-174897346:-|1.4555304870078862|0.0282356417027023|5.69|151.0|16|1|sense;L1PA5_dup5856|chr8:108210599-108211573:-|1.21202687744187|0.2997766760039559|2.02|151.0|2|1|sense;L1PA5_dup5927|chr8:120638406-120641024:-|3.561568471199229|0.0980385469980961|5.18|151.0|16|1|sense;L1PA5_dup614|chr1:198871336-198872259:-|9.713754034029115|0.0443768411369583|7.77|151.0|14|2|sense;L1PA5_dup6362|chr9:92568070-92574214:-|4.038909464602933|0.0405720258266784|6.64|151.0|178|3|sense;L1PA5_dup1721|chr3:17676294-17678154:+|2.320554831928066|0.0526942907803638|5.46|150.0|16|1|sense;L1PA4_dup7036|chrX:53148489-53150249:+|2.731782326793075|0.3995078509078404|2.77|151.0|14|1|sense;L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|163|3|sense;L1PA4_dup5783|chr8:17306825-17308045:+|1.6710506301727914|0.2792430344796653|2.58|151.0|21|2|sense;L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|56|1|sense;L1PA2_dup4379|chr15:45597903-45600342:+|1.422534554421616|0.3304538332261033|2.11|151.0|25|1|sense;L1PA2_dup4413|chr15:64326661-64332685:+|1.68497011038086|0.1104953587875596|3.93|150.0|60|1|sense;L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|76|3|sense;L1PA3_dup1607|chr3:14967731-14969145:+|1.6404528665644178|0.2313779611576089|2.83|151.0|34|3|sense;L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|56|1|sense;L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|164|3|sense;L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|164|3|sense;L1PA8_dup4862|chrX:75307836-75311156:-|1.463389533687761|0.1063279983357985|3.78|151.0|94|3|sense;L1PA3_dup3846|chr5:150742838-150748950:+|6.15701709038747|0.3295787964843827|4.22|151.0|162|3|sense;L1PA2_dup219|chr1:174843227-174849243:-|3.385422371269314|0.4502185352130829|2.91|151.0|155|3|sense;L1PA4_dup9916|chr13:48015541-48017802:+|1.031697469340306|0.1223209208701056|3.08|151.0|23|1|sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|174|3|sense;L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|83|2|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|97|2|sense;L1PA5_dup800|chr2:11317616-11319777:-|1.1820345468553477|0.1072516562704008|3.46|151.0|16|1|sense;L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|40|1|sense;L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|167|3|sense;L1PA3_dup5121|chr8:98694366-98700518:-|1.9420811833955165|0.1631325511588951|3.57|151.0|172|3|sense;L1PA5_dup7821|chr10:76475372-76479052:+|2.759362032487876|0.0317196916567978|6.44|151.0|5|1|sense;L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|32|1|sense;L1PA6_dup2629|chr6:144041198-144047335:-|8.46197267013206|0.0328993634177466|8.01|151.0|109|2|sense;L1PA4_dup9603|chr12:70234382-70236308:-|1.2636865540270334|0.2677530154823319|2.24|151.0|14|1|sense;L1PA7_dup6695|chr8:60596116-60596640:+|2.3652671299777928|0.0896387142609505|4.72|151.0|5|1|sense;L1PA7_dup1065|chr2:44594062-44595325:+|1.073073810959894|0.0645222645714403|4.06|151.0|34|3|sense;L1PA3_dup2196|chr3:158815658-158817088:-|1.3756071831848922|0.0602797686221802|4.51|151.0|35|3|sense;L1PA6_dup2007|chr5:78435234-78441339:-|3.071527030732481|0.1148923742763176|4.74|151.0|130|2|sense;L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|165|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|107|2|sense;L1PA5_dup11140|chr21:37141785-37144250:+|1.6809204103170228|0.2133546262500415|2.98|151.0|23|1|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|157|3|sense;L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|61|2|sense;L1PA4_dup9825|chr13:21551445-21553498:-|2.1740763979942224|0.0390432671801415|5.8|151.0|56|3|sense;L1PA4_dup9055|chr11:72943968-72946555:+|3.408956655752734|0.0761344233922845|5.48|151.0|21|1|sense;L1PA3_dup651|chr1:211953403-211955572:-|1.0915327014028464|0.2191042380166449|2.32|151.0|60|3|sense;L1PA5_dup3520|chr5:37445526-37447949:+|1.139775723154531|0.0673562250861505|4.08|151.0|65|3|sense;L1PA3_dup6603|chrX:78258650-78261886:-|2.5565963010805195|0.2506611837684148|3.35|151.0|18|1|sense;L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|114|2|sense;L1PA3_dup5350|chr8:67589907-67596036:-|1.2144801387404118|0.0363574872120073|5.06|148.0|171|3|sense;L1PA7_dup4133|chr5:38988578-38990492:+|3.1527661537426783|0.1986416476720029|3.99|151.0|28|2|sense;L1PA7_dup2335|chr3:94072804-94075110:-|1.5168134258813628|0.0879653007515334|4.11|151.0|61|3|sense;L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|100|3|sense;L1PA7_dup9867|chr11:77796114-77798302:+|2.1740733061943103|0.0222861722637171|6.61|150.0|17|1|sense;L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|34|1|sense;L1PA8A_dup358|chr2:202752918-202754509:+|2.944743264172071|0.0978995252439894|4.91|151.0|45|3|sense;L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|41|2|sense;L1PA7_dup4698|chr5:142994905-142996202:+|1.0886277230661707|0.0283600561815206|5.26|151.0|31|3|sense;L1PA4_dup7087|chrX:57157850-57163886:-|2.1401743905815205|0.1085499484887162|4.3|151.0|131|2|sense;L1PA5_dup4647|chr6:107164169-107166361:-|1.71694479659355|0.0677468630457893|4.66|151.0|52|3|sense;L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|51|1|sense;L1PA3_dup5514|chr8:98584098-98590122:-|1.9161549903336428|0.3419659941644997|2.49|151.0|103|2|sense;L1PA4_dup2325|chr3:122836624-122838716:+|1.5594453656490657|0.0400718082294704|5.28|151.0|28|2|sense;L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|108|2|sense;L1PA6_dup2349|chr6:35336613-35338792:-|1.015041648427637|0.0131295051638334|6.27|151.0|18|1|sense;L1PA8_dup1882|chr4:48695607-48696698:+|1.0997685570738025|0.0103842939453217|6.73|151.0|19|2|sense;L1PA7_dup2140|chr3:56600446-56602834:-|1.0059614920404427|0.1136568594580574|3.15|150.0|35|2|sense;L1PA6_dup862|chr2:208395714-208397316:+|1.90585448789774|0.0194824047564396|6.61|135.0|12|1|sense;L1PA7_dup11485|chr14:58526937-58531028:+|4.375980472086159|0.1523647907640314|4.84|151.0|67|2|sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|98|2|sense;L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|45|3|sense;L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|64|2|sense;L1PA4_dup11437|chr20:30407588-30410772:+|1.1425303636285142|0.25143720975845|2.18|147.0|52|2|sense;L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|109|2|sense;L1PA6_dup1722|chr4:142648200-142654383:+|1.3570551238417865|0.1138459944263865|3.58|151.0|117|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|59|1|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|54|1|sense;L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|43|1|sense;L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|173|3|sense;L1PA4_dup11196|chr18:49102419-49108550:-|3.812021986168285|0.3095213112564209|3.62|151.0|95|2|sense;L1PA4_dup11296|chr18:77040236-77041941:+|2.6444896867073067|0.0411612013876677|6.01|151.0|44|3|sense;L1PA6_dup815|chr2:189714968-189718098:+|1.91610006915306|0.1132053707647428|4.08|151.0|52|2|sense;L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|174|3|sense;L1PA4_dup3875|chr5:66005542-66007559:+|1.1160191640184918|0.0488715801336203|4.51|151.0|59|3|sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|123|2|sense;L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|170|3|sense;L1PA3_dup8522|chr12:45370847-45376865:+|1.1796277739003815|0.150514701208573|2.97|151.0|95|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|174|3|sense;L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|150|3|sense;L1PA5_dup2471|chr4:53213661-53219784:-|2.730466906966916|0.1639222850485648|4.06|151.0|118|2|sense;L1PA3_dup971|chr2:62005460-62006359:+|1.0872679767419462|0.0337499352813682|5.01|151.0|6|2|sense;L1PA5_dup4409|chr6:72829930-72831740:+|2.092468590233678|0.0162597543871488|7.01|149.0|15|1|sense;L1PA5_dup1227|chr2:135938596-135942665:+|1.6559737013473808|0.2369964951371995|2.8|151.0|35|1|sense;L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|145|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|167|3|sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|80|2|sense L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|80|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 475.8277893066406 3 475.95276 1424.83645 0.31814 0.00015142 -2.5563 -0.0012167 -2.2382 -0.0010653 475.95168318705595 102.18 0.17908 105.69 105.56 105.74 3.5151 33 24 2 0 0 0 22.551 1 24868 24868 0.50596 0 1 97139 16221 14187 10391 10397 19822 19822 0.1410261452801933 KFTWALVVL 9 Unmodified _KFTWALVVL_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|48|2|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|48|2|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 538.8272705078125 2 538.828778 1075.643 NaN NaN NaN NaN NaN NaN NaN 45.208 1 48.845 48.345 49.345 3.6372 0 0 0 0.38073 1 8631 8631 5.2969 0.39987 1 16222 8397 10392 10398 19823 19823 0.10820684759096366 KFVLWLII 8 Unmodified _KFVLWLII_ 0 0 0 L1M5_dup48365|chr17:39291735-39292195:-|2.208005100611134|0.0369856602145261|5.9|151.0|22|2|anti-sense L1M5_dup48365|chr17:39291735-39292195:-|2.208005100611134|0.0369856602145261|5.9|151.0|22|2|anti-sense L1M5_dup48365|chr17:39291735-39292195:-|2.208005100611134|0.0369856602145261|5.9|151.0|22|2|anti-sense MSMS UPN46_class_I_Rep_3 1 516.3377685546875 2 516.336239 1030.65792 NaN NaN NaN NaN NaN NaN NaN 105.38 1 105.38 104.88 105.88 0 0 0 0 0.40746 1 25707 25707 0.69038 0 1 16223 9189 10393 10399 19824 19824 0.14382176627100307 KFVMVMCKL 9 Unmodified _KFVMVMCKL_ 0 0 0 L1MA9_dup11747|chr11:102358469-102359954:-|1.8929223437746716|0.1761470900204378|3.43|151.0|27|2|sense L1MA9_dup11747|chr11:102358469-102359954:-|1.8929223437746716|0.1761470900204378|3.43|151.0|27|2|sense L1MA9_dup11747|chr11:102358469-102359954:-|1.8929223437746716|0.1761470900204378|3.43|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 549.7965698242188 2 549.797252 1097.57995 NaN NaN NaN NaN NaN NaN NaN 34.419 1 38.099 37.599 38.599 3.6797 0 0 0 0.39518 1 5466 5466 1.8442 0.19162 1 16224 10101 10394 10400 19825 19825 0.035063363835206474 KFVPAVVYV 9 Unmodified _KFVPAVVYV_ 0 0 0 L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|95|1|anti-sense L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|95|1|anti-sense L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|95|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 510.7804870605469 2 511.307678 1020.6008 0.14552 7.4407E-05 0.91225 0.00046644 1.0578 0.00054085 511.30815501913526 51.796 0.31422 55.389 55.162 55.477 3.5932 19 15 2 0 0 0 0.12422 1 11412 11412 2.3027 0 1 44309 16225 8729 10395 10401 19826 19826 0.09132709350706136 KFVSRKAF 8 Unmodified _KFVSRKAF_ 0 0 0 THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|20|2|sense THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|20|2|sense THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|20|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.7961120605469 2 491.795269 981.575986 0.158 7.7702E-05 0.92528 0.00045505 1.0833 0.00053275 491.7958162927706 41.537 0.14537 45.183 45.091 45.236 3.6458 18 13 3 0 0 0 0.82752 1 7520 7520 2.8892 0 1 81184 16226 32967 10396 10402 19827 19827 0.08446074267999393 KFVVVKGRV 9 Unmodified _KFVVVKGRV_ 0 0 0 Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_1 2 516.3375244140625 2 516.339844 1030.66514 NaN NaN NaN NaN NaN NaN NaN 99.986 1 103.78 103.28 104.28 3.7942 0 0 0 0.39518 1 24724 24724 1.8442 0 1 16227 480 10397 10403 19828 19828 0.15102909227516648 KFVVVKGRV 9 Unmodified _KFVVVKGRV_ 0 0 0 Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.3377685546875 2 516.339844 1030.66514 NaN NaN NaN NaN NaN NaN NaN 99.855 1 103.35 102.85 103.85 3.4974 0 0 0 0.39518 1 24429 24429 1.8442 0 1 16228 480 10397 10403 19829 19829 0.15102909227516648 KFVVVKGRV 9 Unmodified _KFVVVKGRV_ 0 0 0 Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense Charlie1a_dup4541|chr13:108222526-108223793:-|1.2349025316548428|0.1217682004494705|3.34|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.3379516601562 2 516.339844 1030.66514 NaN NaN NaN NaN NaN NaN NaN 100.05 1 103.54 103.04 104.04 3.4974 0 0 0 0.39518 1 24479 24479 1.8442 0 1 16229 480 10397 10403 19830 19830 0.15102909227516648 KFWENLTSPL 10 Unmodified _KFWENLTSPL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MSMS UPN48_class_I_Rep_1 5 617.8250732421875 2 617.826963 1233.63937 NaN NaN NaN NaN NaN NaN NaN 66.183 1 69.634 69.134 70.134 3.4516 0 0 0 0.53105 1 15115 15115 1.3295 0.13619 1 16230 1409 10398 10404 19831 19831 0.03189970194557645 KFWIDFNL 8 Unmodified _KFWIDFNL_ 0 0 0 ENSG00000153157|ENST00000283141|SYCP2L;ENST00000480294.1_1_6:10891760-10930631:+|nuORF ENSG00000153157|ENST00000283141|SYCP2L ENSG00000153157|ENST00000283141|SYCP2L MSMS UPN48_class_I_Rep_1 5 541.7893676757812 2 541.78711 1081.55967 NaN NaN NaN NaN NaN NaN NaN 63.577 1 67.034 66.534 67.534 3.4578 0 0 0 0.4044 1 14323 14323 4.756 0 1 16231 3640 10399 10405 19832 19832 0.02214948311234366 KFWLTLAIVF 10 Unmodified _KFWLTLAIVF_ 0 0 0 REV__L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|90|2|anti-sense REV__L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|90|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.371826171875 2 619.37081 1236.72707 0.58995 0.0003654 0.84662 0.00052437 1.4366 0.00088977 619.3711005884627 92.586 0.34172 96.464 96.248 96.589 3.8782 83 47 2 0 0 0 0.56354 1 21941 21941 1.3295 0.80477 1 223790 + 16232 28009 10400 10406 19833 19833 0.11817215855944596 KFWVPIFN 8 Unmodified _KFWVPIFN_ 0 0 0 REV__L1M4c_dup3386|chr21:46573674-46575964:+|1.143320507792541|0.1417965402323464|3.01|150.0|151|3|anti-sense REV__L1M4c_dup3386|chr21:46573674-46575964:+|1.143320507792541|0.1417965402323464|3.01|150.0|151|3|anti-sense MSMS UPN48_class_I_Rep_3 7 525.7908935546875 2 525.792195 1049.56984 NaN NaN NaN NaN NaN NaN NaN 27.263 1 31.019 30.519 31.519 3.7555 0 0 0 0.40625 1 3557 3557 2.3027 0.24298 1 + 16233 24596 10401 10407 19834 19834 0.04703556036474765 KFYETFQAIF 10 Unmodified _KFYETFQAIF_ 0 0 0 REV__Tigger1_dup8414|chr11:3681341-3682845:-|1.948419861194094|0.4042025600695121|2.27|151.0|13|1|sense REV__Tigger1_dup8414|chr11:3681341-3682845:-|1.948419861194094|0.4042025600695121|2.27|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 647.3300170898438 2 647.329339 1292.64412 0.5879 0.00038056 -0.17862 -0.00011563 0.40928 0.00026494 647.3290845860802 58.834 1.1423 62.333 61.952 63.094 3.4987 186 72 4 0 0 0 0.55724 1 13004 13004 4.5289 4.5289 1 952490 + 16234 32543 10402 10408 19835 19835 0.009508543373385692 KFYFFFLNL 9 Unmodified _KFYFFFLNL_ 0 0 0 L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|137|2|anti-sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|137|2|anti-sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|137|2|anti-sense MSMS UPN46_class_I_Rep_3 1 619.8328247070312 2 619.83406 1237.65357 NaN NaN NaN NaN NaN NaN NaN 53.171 1 53.171 52.671 53.671 0 0 0 0 0.4007 1 11422 11422 0.52476 0 1 16235 12267 10403 10409 19836 19836 0.04424667413536554 KFYGFRDEL 9 Unmodified _KFYGFRDEL_ 0 0 0 REV__L1ME1_dup13986|chr7:112828641-112830359:-|1.1449179285958544|0.0706112845929796|4.02|151.0|122|3|anti-sense REV__L1ME1_dup13986|chr7:112828641-112830359:-|1.1449179285958544|0.0706112845929796|4.02|151.0|122|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.7980346679688 2 587.798206 1173.58186 0.39767 0.00023375 0.071786 4.2196E-05 0.46946 0.00027595 587.7978638845743 45.174 0.6995 48.932 48.638 49.338 3.7579 75 52 2 0 0 0 0.46869 1 8685 8685 3.9444 0.3479 1 160400 + 16236 27604 10404 10410 19837 19837 0.0020112798899845075 KFYGMLSL 8 Unmodified _KFYGMLSL_ 0 0 0 REV__nc|ENSG00000107789|Q9UNW1-4|MINPP1 REV__nc|ENSG00000107789|Q9UNW1-4|MINPP1 MSMS UPN48_class_I_Rep_1 5 479.7582702636719 2 479.756964 957.499375 NaN NaN NaN NaN NaN NaN NaN 68.852 1 72.307 71.807 72.807 3.4548 0 0 0 0.40157 1 15928 15928 7.2892 0.56607 1 + 16237 18359 10405 10411 19838 19838 0.018925146565152318 KFYKKRIRH 9 Unmodified _KFYKKRIRH_ 0 0 0 REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|17|1|sense REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|17|1|sense MSMS UPN47_class_I_Rep_2 3 638.3118896484375 2 638.393474 1274.77239 NaN NaN NaN NaN NaN NaN NaN 61.522 1 64.782 64.282 65.282 3.2594 0 0 0 0.4007 1 14468 14468 0.52476 0.12405 1 + 16238 28990 10406 10412 19839 19839 0.14599879161733043 KFYKRRNR 8 Unmodified _KFYKRRNR_ 0 0 0 REV__L1PA14_dup497|chr3:17647915-17649483:+|1.704478327876367|0.010192240042494|7.39|151.0|1|1|sense REV__L1PA14_dup497|chr3:17647915-17649483:+|1.704478327876367|0.010192240042494|7.39|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 584.346923828125 2 584.346523 1166.67849 NaN NaN NaN NaN NaN NaN NaN 39.524 1 39.524 39.024 40.024 0 0 0 0 0.40746 1 7601 7601 0.69038 0.088878 1 + 16239 29172 10407 10413 19840 19840 0.10182160059457601 KFYRFSDMD 9 Unmodified _KFYRFSDMD_ 0 0 0 ENSG00000145451|ENST00000274093|GLRA3 ENSG00000145451|ENST00000274093|GLRA3 ENSG00000145451|ENST00000274093|GLRA3 MSMS UPN48_class_I_Rep_1 5 604.82080078125 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 34.262 1 37.776 37.276 38.276 3.5144 0 0 0 0.39428 1 5457 5457 2.0598 0.40713 1 16240 3397 10408 10414 19841 19841 -0.062271086424289024 KFYRKKWR 8 Unmodified _KFYRKKWR_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-2|DGKH REV__nc|ENSG00000102780|Q86XP1-2|DGKH MSMS UPN46_class_I_Rep_3 1 606.361328125 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 36.368 1 36.368 35.868 36.868 0 0 0 0 0.40746 1 6735 6735 0.69038 0 1 + 16241 18202 10409 10415 19842 19842 0.11180518724631838 KFYRKKWR 8 Unmodified _KFYRKKWR_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-2|DGKH REV__nc|ENSG00000102780|Q86XP1-2|DGKH MSMS UPN47_class_I_Rep_1 2 606.3610229492188 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 110.49 1 114.07 113.57 114.57 3.5835 0 0 0 0.40746 1 27241 27241 0.69038 0 1 + 16242 18202 10409 10415 19843 19843 0.11180518724631838 KFYTDPSYF 9 Unmodified _KFYTDPSYF_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS UPN48_class_I_Rep_1 5 584.2718505859375 2 584.27149 1166.52843 0.47071 0.00027502 0.083514 4.8795E-05 0.55423 0.00032382 584.2713645011809 55.471 0.81969 58.98 58.659 59.479 3.5082 116 54 3 0 0 0 0.048662 4 11883 11799;11839;11883;11929 49.554 24.155 1 399470 16243 3791 10410 10416 19844;19845;19846;19847 19846 -0.0481766951352256 KFYTDPSYF 9 Unmodified _KFYTDPSYF_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS UPN48_class_I_Rep_2 6 584.2716064453125 2 584.27149 1166.52843 0.60488 0.00035342 0.022586 1.3197E-05 0.62747 0.00036661 584.2713263673432 55.487 0.74913 59.042 58.674 59.424 3.5559 115 45 3 0 0 0 0.048662 4 11835 11757;11794;11835;11881 49.554 24.155 1 438280 16244 3791 10410 10416 19848;19849;19850;19851 19850 -0.0481766951352256 KFYTDPSYF 9 Unmodified _KFYTDPSYF_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS UPN48_class_I_Rep_3 7 584.271484375 2 584.27149 1166.52843 0.37818 0.00022096 0.17854 0.00010432 0.55673 0.00032528 584.2715139333618 55.428 0.79393 58.983 58.608 59.401 3.5554 101 47 3 0 0 0 0.028995 5 11756 11674;11717;11756;11798;11837 57.722 32.323 1 362760 16245 3791 10410 10416 19852;19853;19854;19855;19856 19854 -0.0481766951352256 KFYTREYL 8 Unmodified _KFYTREYL_ 0 0 0 L1ME4a_dup16523|chr8:55933343-55933570:-|1.739628762787114|0.0087320530142001|7.64|151.0|2|1|sense L1ME4a_dup16523|chr8:55933343-55933570:-|1.739628762787114|0.0087320530142001|7.64|151.0|2|1|sense L1ME4a_dup16523|chr8:55933343-55933570:-|1.739628762787114|0.0087320530142001|7.64|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.7981567382812 2 560.295299 1118.57605 0.35143 0.0001969 0.16667 9.3386E-05 0.5181 0.00029029 560.2949654682027 66.743 1.0697 70.101 69.596 70.666 3.3584 174 79 3 0 0 0 0.82752 1 15896 15896 6.7232 0.51738 1 364070 16246 12856 10411 10417 19857 19857 0.021500294773204587 KFYVKWCL 8 Unmodified _KFYVKWCL_ 0 0 0 REV__ENST00000496055.5_1_1:76251947-76253334:+|nuORF REV__ENST00000496055.5_1_1:76251947-76253334:+|nuORF MSMS UPN48_class_I_Rep_2 6 543.7929077148438 2 543.793881 1085.57321 NaN NaN NaN NaN NaN NaN NaN 50.759 1 54.426 53.926 54.926 3.6679 0 0 0 0.40604 1 10394 10394 2.5775 0 1 + 16247 22658 10412 10418 19858 19858 0.03384482818819379 KGCLHRRQL 9 Unmodified _KGCLHRRQL_ 0 0 0 REV__L1PA7_dup4111|chr5:34085605-34086452:+|2.200459501314173|0.0318265370091222|6.11|151.0|18|3|sense REV__L1PA7_dup4111|chr5:34085605-34086452:+|2.200459501314173|0.0318265370091222|6.11|151.0|18|3|sense MSMS UPN48_class_I_Rep_1 5 555.8217163085938 2 555.819284 1109.62402 NaN NaN NaN NaN NaN NaN NaN 96.931 1 100.54 100.04 101.04 3.6088 0 0 0 0.39518 1 23376 23376 1.8442 0.6509 1 + 16248 30091 10413 10419 19859 19859 0.07358824916377671 KGDGPSPEARV 11 Unmodified _KGDGPSPEARV_ 0 0 0 REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|159|3|anti-sense REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|159|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.9199829101562 2 556.78837 1111.56219 0.046838 2.6079E-05 -1.1033 -0.00061428 -1.0564 -0.0005882 557.2883602173749 26.242 0.056025 29.736 29.714 29.77 3.4945 6 4 2 0 0 0 0.67398 1 3761 3761 1.0715 0 1 20148 + 16249 23951 10414 10420 19860 19860 0.010867519782323143 KGDKFWYI 8 Unmodified _KGDKFWYI_ 0 0 0 REV__nc|ENSG00000129116|Q8WX93-2|PALLD REV__nc|ENSG00000129116|Q8WX93-2|PALLD MULTI-SECPEP UPN48_class_I_Rep_3 7 528.277099609375 2 528.779285 1055.54402 0.37678 0.00019924 1.1242 0.00059445 1.501 0.00079368 528.7808387339734 31.765 0.048088 35.466 35.428 35.477 3.7015 7 5 2 0 0 0 0.72333 1 4745 4745 2.0598 0 1 27810 + 16250 18917 10415 10421 19861 19861 0.018466617941840013 KGEAFAWWSD 10 Unmodified _KGEAFAWWSD_ 0 0 0 ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS ENSG00000163618|ENST00000383710|CADPS ENSG00000163618|ENST00000383710|CADPS MSMS UPN47_class_I_Rep_2 3 598.7722778320312 2 598.772188 1195.52982 NaN NaN NaN NaN NaN NaN NaN 60.958 1 64.223 63.723 64.723 3.2654 0 0 0 0.53105 1 14295 14295 3.2813 1.2216 1 16251 4021 10416 10422 19862 19862 -0.0601203542478288 KGEGGGTIIYL 11 Unmodified _KGEGGGTIIYL_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|7|1|sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|7|1|sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.3070678710938 2 554.305864 1106.59717 0.44295 0.00024553 -0.34691 -0.00019229 0.096046 5.3239E-05 554.3055303748595 69.709 0.74385 72.913 72.675 73.419 3.2044 107 58 2 0 0 0 0.28117 1 16978 16978 17.443 0.32975 1 208980 16252 8294 10417 10423 19863 19863 0.04813994786195508 KGEGGGTIIYL 11 Unmodified _KGEGGGTIIYL_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|7|1|sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|7|1|sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|7|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 554.305864 1106.59717 0.37954 0.00021038 0.078674 4.3609E-05 0.45821 0.00025399 554.3061139221693 69.81 0.062317 73.178 73.143 73.205 3.3678 0.12405 0.00046772 NaN 17.443 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 49920 16253 8294 10417 10423 0.04813994786195508 KGFLGHLK 8 Unmodified _KGFLGHLK_ 0 0 0 ENST00000370500.9_1_1:89323107-89325618:-|nuORF ENST00000370500.9_1_1:89323107-89325618:-|nuORF ENST00000370500.9_1_1:89323107-89325618:-|nuORF MSMS UPN48_class_I_Rep_3 7 450.275146484375 2 450.276712 898.538872 NaN NaN NaN NaN NaN NaN NaN 87.351 1 91.142 90.642 91.642 3.7905 0 0 0 0.40746 1 20726 20726 0.69038 0 1 16254 6383 10418 10424 19864 19864 0.08554402722211307 KGFRIRYI 8 Unmodified _KGFRIRYI_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MULTI-MSMS UPN48_class_I_Rep_3 7 526.8219604492188 2 526.821818 1051.62908 0.45824 0.00024141 0.21848 0.0001151 0.67673 0.00035651 526.821833689117 108.73 0.51394 112.4 112.24 112.75 3.6751 142 57 4 0 0 0 0.82752 1 25769 25769 9.3474 0 1 158100000 16255 4130 10419 10425 19865 19865 0.10533452050663072 KGGCKKLH 8 Unmodified _KGGCKKLH_ 0 0 0 REV__ENSG00000198924|ENST00000361384|DCLRE1A REV__ENSG00000198924|ENST00000361384|DCLRE1A MULTI-SECPEP UPN47_class_I_Rep_3 4 435.2507629394531 2 435.752547 869.490542 -0.40046 -0.0001745 0.32604 0.00014207 -0.07442 -3.2429E-05 435.7526882770287 68.4 0.11926 71.597 71.491 71.61 3.1977 10 7 2 0 0 0 0.72333 1 16611 16611 0.69038 0 1 38250 + 16256 21165 10420 10426 19866 19866 0.05057585810675391 KGGHSKKVG 9 Unmodified _KGGHSKKVG_ 0 0 0 REV__MSTB1_dup4027|chr17:8927707-8928115:+|1.0260996246817558|0.0058687547932801|7.45|149.0|19|2|anti-sense REV__MSTB1_dup4027|chr17:8927707-8928115:+|1.0260996246817558|0.0058687547932801|7.45|149.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 449.2666320800781 2 449.266876 896.519199 -0.097955 -4.4008E-05 -0.25412 -0.00011417 -0.35207 -0.00015817 449.26667088482594 81.464 0.58034 84.848 84.503 85.083 3.3839 134 66 3 0 0 0 0.46869 2 20262 20262;20299 3.9444 1.6417 1 186320 + 16257 31906 10421 10427 19867;19868 19867 0.06680026711478604 KGGHSKKVG 9 Unmodified _KGGHSKKVG_ 0 0 0 REV__MSTB1_dup4027|chr17:8927707-8928115:+|1.0260996246817558|0.0058687547932801|7.45|149.0|19|2|anti-sense REV__MSTB1_dup4027|chr17:8927707-8928115:+|1.0260996246817558|0.0058687547932801|7.45|149.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 449.26708984375 2 449.266876 896.519199 -0.21915 -9.8457E-05 -0.0599 -2.6911E-05 -0.27905 -0.00012537 449.26677903874884 81.517 0.81082 84.841 84.498 85.308 3.3231 171 88 3 0 0 0 0.49026 1 20358 20358 1.6526 0.85899 1 142880 + 16258 31906 10421 10427 19869 19869 0.06680026711478604 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.75213623046875 2 435.752547 869.490542 0.028832 1.2564E-05 -0.65955 -0.0002874 -0.63072 -0.00027484 435.75213670648645 74.452 0.057251 77.846 77.824 77.882 3.3937 5 3 2 0 0 0 0.82752 1 18335 18335 0.69038 0 1 232700 16259 14157 10422 10428 19870 19870 0.050575858106640226 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 435.2511291503906 2 435.752547 869.490542 0.096294 4.1961E-05 -0.19054 -8.3029E-05 -0.094247 -4.1068E-05 435.7525991006888 71.567 0.23399 75.117 74.984 75.218 3.5505 25 21 2 0 0 0 0.72333 1 16711 16711 0.69038 0 1 69791 16260 14157 10422 10428 19871 19871 0.050575858106640226 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 435.7519836425781 2 435.752547 869.490542 0.18641 8.1229E-05 -1.2613 -0.00054959 -1.0748 -0.00046836 435.7518867206917 74.882 0.090958 78.448 78.428 78.519 3.5659 19 6 4 0 0 0 0.82752 1 17566 17566 2.3027 0 1 659990 16261 14157 10422 10428 19872 19872 0.050575858106640226 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.752547 869.490542 -0.34564 -0.00015061 -1.2114 -0.00052788 -1.5571 -0.00067849 435.7517449527061 75.102 0.09964 78.415 78.364 78.463 3.3127 -0.0023692 -2.7974E-05 NaN 2.3027 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 49146 16262 14157 10422 10428 0.050575858106640226 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.752547 869.490542 -0.35064 -0.00015279 -0.058423 -2.5458E-05 -0.40906 -0.00017825 435.75238231557114 74.668 0.10287 77.98 77.955 78.058 3.3127 0.067262 0.00024013 NaN 0.69038 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 136850 16263 14157 10422 10428 0.050575858106640226 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.752547 869.490542 -0.37446 -0.00016317 0.34798 0.00015163 -0.026481 -1.1539E-05 435.7528022218103 72.088 0.2615 75.378 75.318 75.58 3.2899 0.13028 0.00018869 NaN 0.69038 29 25 2 NaN NaN NaN NaN 0 NaN NaN 0 119460 16264 14157 10422 10428 0.050575858106640226 KGGKKICH 8 Unmodified _KGGKKICH_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|20|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 435.752547 869.490542 0.098079 4.2738E-05 -0.27034 -0.0001178 -0.17226 -7.5064E-05 435.7520530421993 74.799 0.055382 78.389 78.353 78.408 3.59 -0.028064 0.00079218 NaN 2.3027 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 25558 16265 14157 10422 10428 0.050575858106640226 KGGKKIGI 8 Unmodified _KGGKKIGI_ 0 0 0 MERX_dup211|chr8:100285922-100286635:+|1.0403062367827562|0.1832743040253283|2.5|151.0|31|1|anti-sense MERX_dup211|chr8:100285922-100286635:+|1.0403062367827562|0.1832743040253283|2.5|151.0|31|1|anti-sense MERX_dup211|chr8:100285922-100286635:+|1.0403062367827562|0.1832743040253283|2.5|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 400.7706604003906 2 400.771263 799.527973 NaN NaN NaN NaN NaN NaN NaN 49.223 1 52.747 52.247 53.247 3.5239 0 0 0 0.40746 1 9924 9924 0.69038 0 1 16266 16235 10423 10429 19873 19873 0.12019000347936526 KGGRGRRG 8 Unmodified _KGGRGRRG_ 0 0 0 Tigger2a_dup2052|chr10:92667544-92667926:-|1.0465980545712232|0.0124271621102566|6.4|151.0|21|2|anti-sense Tigger2a_dup2052|chr10:92667544-92667926:-|1.0465980545712232|0.0124271621102566|6.4|151.0|21|2|anti-sense Tigger2a_dup2052|chr10:92667544-92667926:-|1.0465980545712232|0.0124271621102566|6.4|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 422.253662109375 2 422.254634 842.494716 NaN NaN NaN NaN NaN NaN NaN 48.569 1 51.916 51.416 52.416 3.3465 0 0 0 0.4044 1 10513 10513 4.756 0 1 16267 33334 10424 10430 19874 19874 0.06716811348610463 KGGRQRQR 8 Unmodified _KGGRQRQR_ 0 0 0 REV__nc|ENSG00000137802|O60336-4|MAPKBP1 REV__nc|ENSG00000137802|O60336-4|MAPKBP1 MSMS UPN46_class_I_Rep_3 1 493.2916259765625 2 493.291748 984.568943 NaN NaN NaN NaN NaN NaN NaN 41.822 1 41.822 41.322 42.322 0 0 0 0 0.40625 1 8230 8230 2.3027 0 1 + 16268 19244 10425 10431 19875 19875 0.07604154440127786 KGGSTPRVHR 10 Unmodified _KGGSTPRVHR_ 0 0 0 L1MB4_dup797|chr2:74086826-74087408:-|2.149161733039681|0.0533997133230641|5.33|151.0|11|2|sense L1MB4_dup797|chr2:74086826-74087408:-|2.149161733039681|0.0533997133230641|5.33|151.0|11|2|sense L1MB4_dup797|chr2:74086826-74087408:-|2.149161733039681|0.0533997133230641|5.33|151.0|11|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 547.8743896484375 2 547.812513 1093.61047 0.36663 0.00020084 3.9257 0.0021505 4.2923 0.0023514 547.8150530016968 44.149 0.074448 44.149 44.111 44.186 0 9 6 2 0 0 0 0.84575 1 8884 8884 3.2813 0.70383 1 53433 16269 10587 10426 10432 19876 19876 0.06741290408785972 KGGWGPLR 8 Unmodified _KGGWGPLR_ 0 0 0 REV__ENSG00000003393|ENST00000264276|ALS2 REV__ENSG00000003393|ENST00000264276|ALS2 MSMS UPN47_class_I_Rep_1 2 435.7516784667969 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 74.785 1 78.179 77.679 78.679 3.3937 0 0 0 0.40625 1 18424 18424 2.3027 0 1 + 16270 17515 10427 10433 19877 19877 0.047206590283281 KGHALICH 8 Unmodified _KGHALICH_ 0 0 0 REV__L1PB1_dup10676|chr13:72896055-72898554:+|5.517338640385115|0.0676151264837418|6.35|151.0|55|3|sense REV__L1PB1_dup10676|chr13:72896055-72898554:+|5.517338640385115|0.0676151264837418|6.35|151.0|55|3|sense MSMS UPN47_class_I_Rep_3 4 439.7372741699219 2 439.736897 877.459241 NaN NaN NaN NaN NaN NaN NaN 95.156 1 98.566 98.066 99.066 3.4095 0 0 0 0.40738 1 23663 23663 0.79363 0 1 + 16271 30298 10428 10434 19878 19878 0.015610127765853576 KGHGPHQPP 9 Unmodified _KGHGPHQPP_ 0 0 0 ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF ENST00000571543.1_1_17:1131443-1132291:-|nuORF MSMS UPN48_class_I_Rep_1 5 477.7495422363281 2 477.74885 953.483148 NaN NaN NaN NaN NaN NaN NaN 37.937 1 41.443 40.943 41.943 3.5052 0 0 0 0.38478 1 6510 6510 4.3292 1.44 1 16272 7515 10429 10435 19879 19879 0.004545695346109824 KGHKKSERKP 10 Unmodified _KGHKKSERKP_ 0 0 0 REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|32|2|sense REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|32|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 597.85546875 2 597.856921 1193.69929 0.48828 0.00029192 -0.50848 -0.000304 -0.020205 -1.2079E-05 598.3583623650973 85.688 1.3356 89.06 88.741 90.076 3.3716 281 165 2 0 0 0 0.56354 1 21687 21687 1.3295 1.3295 1 409170 + 16273 29263 10430 10436 19880 19880 0.11018705648439209 KGHKLCDVMFM 11 Unmodified _KGHKLCDVMFM_ 0 0 0 L1MB7_dup8208|chr6:170370978-170371459:-|1.3673557124299285|0.4743982924709184|1.53|151.0|10|2|sense L1MB7_dup8208|chr6:170370978-170371459:-|1.3673557124299285|0.4743982924709184|1.53|151.0|10|2|sense L1MB7_dup8208|chr6:170370978-170371459:-|1.3673557124299285|0.4743982924709184|1.53|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 436.8787841796875 3 436.880228 1307.61885 NaN NaN NaN NaN NaN NaN NaN 93.279 1 96.902 96.402 97.402 3.624 0 0 0 0.38417 1 22415 22415 1.3296 0.36737 1 16274 10880 10431 10437 19881 19881 -0.022649830528052917 KGHPFHWLL 9 Unmodified _KGHPFHWLL_ 0 0 0 REV__Tigger1_dup5171|chr6:119236728-119237363:+|1.1302497747349407|0.0253810885088748|5.48|148.0|31|3|anti-sense REV__Tigger1_dup5171|chr6:119236728-119237363:+|1.1302497747349407|0.0253810885088748|5.48|148.0|31|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.8131713867188 2 567.813993 1133.61343 NaN NaN NaN NaN NaN NaN NaN 76.305 1 79.72 79.22 80.22 3.4149 0 0 0 0.38478 1 18877 18877 4.3292 1.7518 1 + 16275 32463 10432 10438 19882 19882 0.05197165533604675 KGHRKLVEPN 10 Unmodified _KGHRKLVEPN_ 0 0 0 REV__ENSG00000115904|ENST00000402219|SOS1 REV__ENSG00000115904|ENST00000402219|SOS1 MULTI-SECPEP UPN46_class_I_Rep_3 1 589.8447265625 2 589.343646 1176.67274 0.54454 0.00032092 -0.77637 -0.00045755 -0.23183 -0.00013663 589.3428784705301 100.76 0.12783 100.76 100.73 100.86 0 20 14 3 0 0 0 0.84575 1 24591 24591 1.1933 0.59184 1 152330 + 16276 18585 10433 10439 19883 19883 0.09147016757151505 KGIITSILFFL 11 Unmodified _KGIITSILFFL_ 0 0 0 MLT1F_dup2574|chr10:74330438-74330928:+|1.050175700361578|0.016057477970161|6.03|151.0|3|1|sense MLT1F_dup2574|chr10:74330438-74330928:+|1.050175700361578|0.016057477970161|6.03|151.0|3|1|sense MLT1F_dup2574|chr10:74330438-74330928:+|1.050175700361578|0.016057477970161|6.03|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3916625976562 2 626.389199 1250.76385 0.42788 0.00026802 1.3378 0.00083801 1.7657 0.001106 626.889687518778 104.28 0.085419 107.91 107.85 107.94 3.6247 18 13 2 0 0 0 0.59712 1 25121 25121 5.2969 0 1 17423000 16277 16379 10434 10440 19884 19884 0.14849467681915485 KGILEPVRCPQ 11 Unmodified _KGILEPVRCPQ_ 0 0 0 REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense MSMS UPN47_class_I_Rep_1 2 620.3455200195312 2 620.34754 1238.68053 NaN NaN NaN NaN NaN NaN NaN 49.516 1 53.176 52.676 53.676 3.6592 0 0 0 0.38417 1 10777 10777 1.0715 0.46996 1 + 16278 24754 10435 10441 19885 19885 0.07073407962388956 KGIRRHLF 8 Unmodified _KGIRRHLF_ 0 0 0 MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|67|2|anti-sense MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|67|2|anti-sense MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.8189697265625 2 513.81961 1025.62467 NaN NaN NaN NaN NaN NaN NaN 41.846 1 45.354 44.854 45.854 3.5079 0 0 0 0.40604 1 7673 7673 2.5775 0.27475 1 16279 16161 10436 10442 19886 19886 0.11287987627747498 KGIRSVELF 9 Unmodified _KGIRSVELF_ 0 0 0 REV__L1MB4_dup7764|chr17:49734640-49735187:+|1.0597342965058694|0.0280840185916163|5.24|150.0|3|1|sense REV__L1MB4_dup7764|chr17:49734640-49735187:+|1.0597342965058694|0.0280840185916163|5.24|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 524.8126831054688 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 97.895 1 97.895 97.395 98.395 0 0 0 0 0.39428 1 23832 23832 2.0598 0 1 + 16280 26021 10437 10443 19887 19887 0.08578022231267823 KGISPLIQQ 9 Unmodified _KGISPLIQQ_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|37|1|sense;L1PA6_dup3100|chr8:67352934-67359075:-|1.1685258399666305|0.0561381427852287|4.38|151.0|103|2|sense;L1PA5_dup9169|chr13:48696536-48701520:+|1.2053157210591312|0.1032640766230533|3.55|151.0|134|3|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|37|1|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|37|1|sense MSMS UPN48_class_I_Rep_2 6 492.2974548339844 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 66.833 1 70.329 69.829 70.829 3.4964 0 0 0 0.39598 1 15299 15299 1.6526 0 1 16281 14536 10438 10444 19888 19888 0.08914333339953373 KGIVHYDPTK 10 Unmodified _KGIVHYDPTK_ 0 0 0 ENST00000508336.1_1_4:166469096-166469723:-|nuORF ENST00000508336.1_1_4:166469096-166469723:-|nuORF ENST00000508336.1_1_4:166469096-166469723:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 579.8063354492188 2 579.319306 1156.62406 0.42899 0.00024852 -0.41795 -0.00024212 0.011043 6.3974E-06 579.319156835125 40.343 0.71416 43.848 43.593 44.307 3.5048 97 64 2 0 0 0 0.44401 1 7300 7300 16.149 0.90062 1 126440 16282 7167 10439 10445 19889 19889 0.05201103397348561 KGKCRLEI 8 Unmodified _KGKCRLEI_ 0 0 0 REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958 REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958 MULTI-MSMS UPN46_class_I_Rep_3 1 473.77630615234375 2 473.778762 945.542971 -0.28148 -0.00013336 -0.6508 -0.00030833 -0.93228 -0.00044169 473.7761970446099 17.774 0.06912 17.774 17.749 17.818 0 10 6 2 0 0 0 0.82752 1 1453 1453 0.69038 0 1 40630 + 16283 32042 10440 10446 19890 19890 0.06802124153614386 KGKHHPKA 8 Unmodified _KGKHHPKA_ 0 0 0 REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|135|3|anti-sense REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|135|3|anti-sense MSMS UPN46_class_I_Rep_3 1 451.7681884765625 2 451.769586 901.524619 NaN NaN NaN NaN NaN NaN NaN 118.37 1 118.37 117.87 118.87 0 0 0 0 0.40746 1 29380 29380 0.69038 0.088878 1 + 16284 31294 10441 10447 19891 19891 0.06991750293934729 KGKIKLCKA 9 Unmodified _KGKIKLCKA_ 0 0 0 REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4 REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4 MSMS UPN46_class_I_Rep_3 1 494.81964111328125 2 494.82043 987.626307 NaN NaN NaN NaN NaN NaN NaN 13.044 1 13.044 12.544 13.544 0 0 0 0 0.4029 1 282 282 0 0 1 + 16285 19743 10442 10448 19892 19892 0.13199860601457658 KGKIKLCKA 9 Unmodified _KGKIKLCKA_ 0 0 0 REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4 REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4 MSMS UPN46_class_I_Rep_3 1 494.8189697265625 2 494.82043 987.626307 NaN NaN NaN NaN NaN NaN NaN 19.14 1 19.14 18.64 19.64 0 0 0 0 0.4029 1 1779 1779 0 0 1 + 16286 19743 10442 10448 19893 19893 0.13199860601457658 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN46_class_I_Rep_3 1 615.4037475585938 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 48.786 1 48.786 48.286 49.286 0 0 0 0 0.53105 1 10192 10192 0.40072 0.050084 1 + 16287 26309 10443 10449 19894 19894 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN47_class_I_Rep_1 2 615.4041137695312 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 119.62 1 123.22 122.72 123.72 3.6036 0 0 0 0.53105 1 29732 29732 0.40072 0.1317 1 + 16288 26309 10443 10449 19895 19895 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN47_class_I_Rep_2 3 615.4041137695312 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 118.74 1 122.22 121.72 122.72 3.4822 0 0 0 0.53105 1 29065 29065 0.40072 0.050084 1 + 16289 26309 10443 10449 19896 19896 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN47_class_I_Rep_3 4 615.4036865234375 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 68.475 1 71.672 71.172 72.172 3.1977 0 0 0 0.53105 1 16641 16641 0.40072 0.093686 1 + 16290 26309 10443 10449 19897 19897 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN47_class_I_Rep_3 4 615.4036865234375 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 118.82 1 122.24 121.74 122.74 3.4222 0 0 0 0.53105 1 29320 29320 0.40072 0.40072 1 + 16291 26309 10443 10449 19898 19898 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN48_class_I_Rep_1 5 615.4036865234375 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 114.07 1 117.7 117.2 118.2 3.6301 0 0 0 0.53105 1 27725 27725 0.40072 0.050084 1 + 16292 26309 10443 10449 19899 19899 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN48_class_I_Rep_3 7 615.4032592773438 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 115.96 1 119.59 119.09 120.09 3.6312 0 0 0 0.53105 1 27601 27601 0.40072 0.050084 1 + 16293 26309 10443 10449 19900 19900 0.18280165678788762 KGKKHHRLII 10 Unmodified _KGKKHHRLII_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|192|3|sense MSMS UPN48_class_I_Rep_3 7 615.403564453125 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 118.66 1 122.25 121.75 122.75 3.5847 0 0 0 0.53105 1 28217 28217 0.40072 0.1317 1 + 16294 26309 10443 10449 19901 19901 0.18280165678788762 KGKKIRILK 9 Unmodified _KGKKIRILK_ 0 0 0 L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|42|1|sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|42|1|sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|42|1|sense MSMS UPN48_class_I_Rep_3 7 542.3899536132812 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.84 1 73.352 72.852 73.852 3.5128 0 0 0 0.4007 1 16118 16118 0.52476 0 1 16295 9359 10444 10450 19902 19902 0.22711146561300666 KGKKNQIGA 9 Unmodified _KGKKNQIGA_ 0 0 0 L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.2887878417969 2 472.287808 942.561064 0.19161 9.0495E-05 0.41802 0.00019743 0.60963 0.00028792 472.2879520511211 88.063 0.1954 91.719 91.584 91.779 3.6563 31 20 2 0 0 0 0.45688 1 22029 22029 4.756 2.1785 1 67417 16296 14788 10445 10451 19903 19903 0.08748582399982752 KGKKNQIGA 9 Unmodified _KGKKNQIGA_ 0 0 0 L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 472.287808 942.561064 0.24552 0.00011596 0.17311 8.1757E-05 0.41863 0.00019772 472.2878610433283 91.906 0.5806 91.906 91.499 92.08 0 0.063719 -1.4954E-05 NaN 4.756 66 55 2 NaN NaN NaN NaN 0 NaN NaN 0 169250 16297 14788 10445 10451 0.08748582399982752 KGKKNQIGA 9 Unmodified _KGKKNQIGA_ 0 0 0 L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 472.287808 942.561064 0.095171 4.4948E-05 0.052531 2.481E-05 0.1477 6.9758E-05 472.2879280303669 88.28 0.19405 91.902 91.844 92.038 3.6229 0.059744 -0.00012885 NaN 4.756 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 141540 16298 14788 10445 10451 0.08748582399982752 KGKLQNKRR 9 Unmodified _KGKLQNKRR_ 0 0 0 REV__L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|8|1|sense REV__L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 564.359619140625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 110.6 1 114.13 113.63 114.63 3.5271 0 0 0 0.4007 1 26923 26923 0.52476 0 1 + 16299 24580 10446 10452 19904 19904 0.14642429230934795 KGKLQNKRR 9 Unmodified _KGKLQNKRR_ 0 0 0 REV__L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|8|1|sense REV__L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 564.3590698242188 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 75.652 1 79.152 78.652 79.652 3.4996 0 0 0 0.4007 1 17936 17936 0.52476 0 1 + 16300 24580 10446 10452 19905 19905 0.14642429230934795 KGKLQNKRR 9 Unmodified _KGKLQNKRR_ 0 0 0 REV__L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|8|1|sense REV__L1M4c_dup1448|chr7:99024064-99025245:+|1.7154775826828814|0.1384569931583122|3.63|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 564.359130859375 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 83.34 1 87.046 86.546 87.546 3.7066 0 0 0 0.4007 1 19754 19754 0.52476 0 1 + 16301 24580 10446 10452 19906 19906 0.14642429230934795 KGKMKVKTFT 10 Unmodified _KGKMKVKTFT_ 0 0 0 REV__L1PA5_dup1832|chr3:40271391-40277508:+|1.3636188535306308|0.0647398038675745|4.4|150.0|16|1|sense REV__L1PA5_dup1832|chr3:40271391-40277508:+|1.3636188535306308|0.0647398038675745|4.4|150.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 584.2860717773438 2 584.349551 1166.68455 NaN NaN NaN NaN NaN NaN NaN 36.36 1 36.36 35.86 36.86 0 0 0 0 0.53105 1 6732 6732 1.3295 0 1 + 16302 29721 10447 10453 19907 19907 0.10787497456090023 KGKMVYIYRMR 11 Unmodified _KGKMVYIYRMR_ 0 0 0 REV__L1ME3G_dup3501|chr3:141495374-141496082:+|1.7117940193867256|0.0508865363288428|5.07|151.0|12|2|sense REV__L1ME3G_dup3501|chr3:141495374-141496082:+|1.7117940193867256|0.0508865363288428|5.07|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.6025695800781 3 482.268703 1443.78428 -0.51697 -0.00024932 0.71745 0.000346 0.20049 9.6688E-05 482.26901970846694 30.276 0.67966 33.587 33.258 33.937 3.3116 108 55 3 0 0 0 0.68081 1 4942 4942 0.45452 0.29519 1 93484 + 16303 28198 10448 10454 19908 19908 0.08013991798384268 KGKQDKKYKMR 11 Unmodified _KGKQDKKYKMR_ 0 0 0 REV__ENSG00000105997|ENST00000612286|HOXA3 REV__ENSG00000105997|ENST00000612286|HOXA3 MULTI-MSMS UPN48_class_I_Rep_1 5 470.60614013671875 3 470.606373 1408.79729 0.12862 6.0527E-05 0.33979 0.00015991 0.46841 0.00022044 470.6063905198996 54.874 0.70116 58.383 57.919 58.62 3.5082 62 48 2 0 0 0 0.68132 1 11596 11596 0.40827 0 1 154020 + 16304 18313 10449 10455 19909 19909 0.10924146182105687 KGKQKEKKKKK 11 Unmodified _KGKQKEKKKKK_ 0 0 0 REV__HAL1_dup7960|chr5:131783314-131784457:+|1.8669186495897456|0.0286947051898783|6.02|151.0|24|2|sense REV__HAL1_dup7960|chr5:131783314-131784457:+|1.8669186495897456|0.0286947051898783|6.02|151.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 453.3055114746094 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 117.46 1 121.06 120.56 121.56 3.6036 0 0 0 0.38417 1 29119 29119 0.08335 0.010087 1 + 16305 23435 10450 10456 19910 19910 0.22873242364676116 KGKRHERRFTK 11 Unmodified _KGKRHERRFTK_ 0 0 0 REV__L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|19|2|sense REV__L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|19|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 481.61920166015625 3 481.619892 1441.83785 -0.33441 -0.00016106 -1.0189 -0.00049073 -1.3533 -0.00065179 481.61936417994013 13.057 0.3672 13.057 12.98 13.347 0 66 38 2 0 0 0 0.6724 1 280 280 1.2148 0 1 98526 + 16306 27427 10451 10457 19911 19911 0.13460248616752324 KGKSWKALT 9 Unmodified _KGKSWKALT_ 0 0 0 nc|ENSG00000171056|Q9BT81-2|SOX7 nc|ENSG00000171056|Q9BT81-2|SOX7 nc|ENSG00000171056|Q9BT81-2|SOX7 MSMS UPN48_class_I_Rep_1 5 509.80377197265625 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 76.717 1 80.227 79.727 80.727 3.5102 0 0 0 0.39598 1 18225 18225 1.6526 0.85899 1 16307 16750 10452 10458 19912 19912 0.08902039576821608 KGLEPLWQDK 10 Unmodified _KGLEPLWQDK_ 0 0 0 REV__L1MC1_dup8832|chr10:96882418-96883032:-|1.0632845239956514|0.0061009585928801|7.45|150.0|4|1|sense REV__L1MC1_dup8832|chr10:96882418-96883032:-|1.0632845239956514|0.0061009585928801|7.45|150.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 405.22320556640625 3 405.224034 1212.65027 -1.4365 -0.0005821 -1.2467 -0.00050518 -2.6832 -0.0010873 405.2234899286114 21.037 0.37653 24.386 24.311 24.687 3.3496 42 33 2 0 0 0 0.56374 1 2289 2289 0.50596 0 1 21357 + 16308 26615 10453 10459 19913 19913 0.05245372568833773 KGLISTTYKKL 11 Unmodified _KGLISTTYKKL_ 0 0 0 L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 626.3863525390625 2 626.387188 1250.75982 NaN NaN NaN NaN NaN NaN NaN 105.34 1 109.08 108.58 109.58 3.7395 0 0 0 0.38417 1 25856 25856 5.2969 0 1 16309 10142 10454 10460 19914 19914 0.14447378188174298 KGLISTTYKKL 11 Unmodified _KGLISTTYKKL_ 0 0 0 L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 626.3881225585938 2 626.387188 1250.75982 0.63455 0.00039748 0.70647 0.00044252 1.341 0.00084 626.387819608458 103.63 0.2744 107.16 106.92 107.19 3.5231 76 41 2 0 0 0 22.551 1 25139 25139 1.0715 0 1 42789000 16310 10142 10454 10460 19915 19915 0.14447378188174298 KGLISTTYKKL 11 Unmodified _KGLISTTYKKL_ 0 0 0 L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.3880004882812 2 626.387188 1250.75982 0.51235 0.00032093 0.5736 0.00035929 1.0859 0.00068022 626.387689476984 104.86 1.0662 108.39 108.21 109.28 3.5308 261 167 2 0 0 0 0.59712 1 25871 25871 5.2969 0.39987 1 42067000 16311 10142 10454 10460 19916 19916 0.14447378188174298 KGLISTTYKKL 11 Unmodified _KGLISTTYKKL_ 0 0 0 L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.38720703125 2 626.387188 1250.75982 0.59988 0.00037576 0.4934 0.00030906 1.0933 0.00068482 626.3874446014889 104.95 0.26736 108.67 108.57 108.83 3.7192 67 39 2 0 0 0 0.59712 1 24803 24803 5.2969 1.7004 1 4076900 16312 10142 10454 10460 19917 19917 0.14447378188174298 KGLKHYYA 8 Unmodified _KGLKHYYA_ 0 0 0 Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|52|1|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|52|1|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|52|1|anti-sense MSMS UPN46_class_I_Rep_3 1 490.27044677734375 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 114.26 1 114.26 113.76 114.76 0 0 0 0 0.40738 1 28236 28236 0.79363 0.10326 1 16313 33382 10455 10461 19918 19918 0.03857794996974917 KGLKQHHKKRT 11 Unmodified _KGLKQHHKKRT_ 0 0 0 REV__L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|181|3|sense REV__L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|181|3|sense MSMS UPN47_class_I_Rep_1 2 454.2801818847656 3 454.280988 1359.82114 NaN NaN NaN NaN NaN NaN NaN 44.127 1 47.822 47.322 48.322 3.6951 0 0 0 0.38417 1 9144 9144 0.45452 0 1 + 16314 29879 10456 10462 19919 19919 0.15561747730816933 KGLLLLLLL 9 Unmodified _KGLLLLLLL_ 0 0 0 ENSG00000104818|ENST00000359342|CGB2 REV__ENST00000551137.5_1_12:56685565-56694091:-|nuORF REV__ENST00000551137.5_1_12:56685565-56694091:-|nuORF MSMS UPN46_class_I_Rep_3 1 498.340087890625 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 41.177 1 41.177 40.677 41.677 0 0 0 0 0.4007 1 8048 8048 0.52476 0 1 16315 1705 10457 10463 19920 19920 0.21787018832651484 KGLLPLLLLLL 11 Unmodified _KGLLPLLLLLL_ 0 0 0 REV__nc|ENSG00000165731|P07949-2|RET REV__nc|ENSG00000165731|P07949-2|RET MSMS UPN47_class_I_Rep_3 4 402.6253662109375 3 402.624699 1204.85227 NaN NaN NaN NaN NaN NaN NaN 92.54 1 95.944 95.444 96.444 3.4034 0 0 0 0.38417 1 23102 23102 0 0 1 + 16316 20133 10458 10464 19921 19921 0.2580350799239568 KGLPRPLHRE 10 Unmodified _KGLPRPLHRE_ 0 0 0 HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|12|2|sense HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|12|2|sense HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 601.85791015625 2 601.859464 1201.70437 NaN NaN NaN NaN NaN NaN NaN 95.174 1 98.955 98.455 99.455 3.7804 0 0 0 0.53105 1 22625 22625 1.4819 0 1 16317 7819 10459 10465 19922 19922 0.11159009511038676 KGLYQGFHV 9 Unmodified _KGLYQGFHV_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN47_class_I_Rep_2 3 524.7809448242188 2 524.782359 1047.55016 NaN NaN NaN NaN NaN NaN NaN 47.478 1 50.827 50.327 51.327 3.3492 0 0 0 0.38478 1 10195 10195 4.3292 1.0479 1 16318 6610 10460 10466 19923 19923 0.028291800257193245 KGLYQGFHV 9 Unmodified _KGLYQGFHV_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN47_class_I_Rep_3 4 524.780517578125 2 524.782359 1047.55016 NaN NaN NaN NaN NaN NaN NaN 47.643 1 50.883 50.383 51.383 3.2405 0 0 0 0.38478 1 10297 10297 4.3292 0 1 16319 6610 10460 10466 19924 19924 0.028291800257193245 KGMQKHGR 8 Unmodified _KGMQKHGR_ 0 0 0 REV__L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|155|3|sense REV__L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|155|3|sense MSMS UPN46_class_I_Rep_3 1 471.2601318359375 2 471.258528 940.502503 NaN NaN NaN NaN NaN NaN NaN 65.847 1 65.847 65.347 66.347 0 0 0 0 0.40625 1 14906 14906 2.3027 0.24298 1 + 16320 28865 10461 10467 19925 19925 0.029872025538679736 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.369140625 2 633.368518 1264.72248 0.72087 0.00045658 0.66795 0.00042306 1.3888 0.00087964 633.3688112105416 90.286 0.24606 90.286 90.195 90.441 0 49 21 3 0 0 0 0.56317 2 21785 21785;21792 1.3295 1.3295 1 620480 + 16321 28819 10462 10468 19926;19927 19926 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.3694458007812 2 633.368518 1264.72248 0.721 0.00045666 0.58057 0.00036772 1.3016 0.00082437 633.3686436609156 91.309 0.31436 91.309 91.11 91.424 0 47 27 3 0 0 0 0.56107 2 22002 22002;22042 2.9952 0.050084 1 542270 + 16322 28819 10462 10468 19928;19929 19928 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.8709106445312 2 633.368518 1264.72248 0.72101 0.00045666 0.65597 0.00041547 1.377 0.00087214 633.3687791530841 91.812 0.36594 91.812 91.499 91.865 0 56 32 3 0 0 0 0.55068 1 22190 22190 2.9952 2.9952 1 1143000 + 16323 28819 10462 10468 19930 19930 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.3693237304688 2 633.368518 1264.72248 0.72137 0.0004569 0.68238 0.0004322 1.4038 0.00088909 633.368783275816 92.599 0.083847 92.599 92.548 92.631 0 28 9 4 0 0 0 0.56317 1 22419 22419 1.3295 1.3295 1 1008100 + 16324 28819 10462 10468 19931 19931 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.3692016601562 2 633.368518 1264.72248 0.72136 0.00045689 0.54063 0.00034242 1.262 0.0007993 633.3686298373319 92.775 0.28595 92.775 92.631 92.917 0 94 28 4 0 0 0 0.55068 1 22455 22455 2.9952 2.9952 1 1859300 + 16325 28819 10462 10468 19932 19932 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.3690795898438 2 633.368518 1264.72248 0.72111 0.00045673 0.55601 0.00035216 1.2771 0.00080888 633.3686676756486 93.132 0.12641 93.132 93.07 93.196 0 26 11 4 0 0 0 0.56107 1 22565 22565 2.9952 1.6657 1 1070200 + 16326 28819 10462 10468 19933 19933 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 633.8709106445312 2 633.368518 1264.72248 0.49691 0.00031473 0.1577 9.9883E-05 0.65461 0.00041461 633.3682238862842 88.853 0.91315 92.591 92.52 93.433 3.7379 198 105 3 0 0 0 0.55068 2 21145 21145;21151 2.9952 2.9952 1 633250 + 16327 28819 10462 10468 19934;19935 19934 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.8704223632812 2 633.368518 1264.72248 0.63609 0.00040288 0.75335 0.00047715 1.3894 0.00088002 633.3688775282221 87.442 0.24638 91.232 90.999 91.246 3.7905 48 29 2 0 0 0 0.56444 1 20702 20702 0.40072 0.40072 1 158440 + 16328 28819 10462 10468 19936 19936 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.3668212890625 2 633.368518 1264.72248 0.63311 0.00040099 0.29676 0.00018796 0.92987 0.00058895 633.3683087255615 88.831 0.73908 92.66 92.464 93.203 3.8293 219 97 4 0 0 0 0.56072 1 21118 21118 1.3295 1.3295 1 508990 + 16329 28819 10462 10468 19937 19937 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 633.368518 1264.72248 0.5758 0.00036469 0.20646 0.00013076 0.78225 0.00049545 633.3685472743223 87.995 0.073036 91.442 91.394 91.467 3.4471 0.15795 -0.00044865 NaN 2.9952 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 84180 + 16330 28819 10462 10468 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 633.368518 1264.72248 0.44186 0.00027986 -0.48419 -0.00030667 -0.042325 -2.6807E-05 633.3679335477035 87.668 0.10696 91.287 91.242 91.349 3.6187 0.0032863 -0.0013235 NaN 2.9952 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 81675 + 16331 28819 10462 10468 0.1007114448577795 KGNHLTRRQR 10 Unmodified _KGNHLTRRQR_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|83|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 633.368518 1264.72248 0.49605 0.00031418 0.90886 0.00057564 1.4049 0.00088982 633.369080330223 87.519 0.27578 91.246 91.107 91.383 3.7279 -0.037437 0.0004411 NaN 2.9952 50 31 2 NaN NaN NaN NaN 0 NaN NaN 0 132230 + 16332 28819 10462 10468 0.1007114448577795 KGNKNKWT 8 Unmodified _KGNKNKWT_ 0 0 0 REV__HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|1|1|sense REV__HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 488.2700500488281 2 488.272158 974.529764 NaN NaN NaN NaN NaN NaN NaN 30.92 1 30.92 30.42 31.42 0 0 0 0 0.40625 1 5100 5100 2.3027 0 1 + 16333 23598 10463 10469 19938 19938 0.04148009365883354 KGNSQDPNE 9 Unmodified _KGNSQDPNE_ 0 0 0 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 MSMS UPN48_class_I_Rep_1 5 494.2738342285156 2 494.720153 987.425752 NaN NaN NaN NaN NaN NaN NaN 44.702 1 48.215 47.715 48.715 3.5132 0 0 0 0.39598 1 8539 8539 1.6526 0.32309 1 16334 16767 10464 10470 19939 19939 -0.06846362252292693 KGPADTVAKKS 11 Unmodified _KGPADTVAKKS_ 0 0 0 REV__L1PA2_dup219|chr1:174843227-174849243:-|3.385422371269314|0.4502185352130829|2.91|151.0|85|3|sense REV__L1PA2_dup219|chr1:174843227-174849243:-|3.385422371269314|0.4502185352130829|2.91|151.0|85|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 551.3160400390625 2 551.316763 1100.61897 0.47768 0.00026335 -0.29666 -0.00016355 0.18102 9.9798E-05 551.3165524207809 34.133 0.55544 37.793 37.571 38.126 3.6607 105 61 2 0 0 0 0.56174 1 5447 5447 6.1918 0 1 108920 + 16335 29481 10465 10471 19940 19940 0.07268799534745085 KGPALQVVAYL 11 Unmodified _KGPALQVVAYL_ 0 0 0 HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|46|2|sense HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|46|2|sense HERVH48-int_dup113|chr21:42919108-42922458:-|2.090166956310441|0.2630292344468757|2.99|151.0|46|2|sense MSMS UPN48_class_I_Rep_2 6 579.849853515625 2 579.847699 1157.68084 NaN NaN NaN NaN NaN NaN NaN 86.329 1 90.046 89.546 90.546 3.7171 0 0 0 0.38417 1 20556 20556 1.3295 0.25807 1 16336 8168 10466 10472 19941 19941 0.10831150953913493 KGPAPALRQ 9 Unmodified _KGPAPALRQ_ 0 0 0 REV__ENST00000410084.7_1_2:231578296-231578380:+|nuORF REV__ENST00000410084.7_1_2:231578296-231578380:+|nuORF MSMS UPN47_class_I_Rep_3 4 469.2820129394531 2 469.282526 936.550499 NaN NaN NaN NaN NaN NaN NaN 107.62 1 111.16 110.66 111.66 3.5382 0 0 0 0.31276 1 26278 26278 10.074 2.1638 1 + 16337 22190 10467 10473 19942 19942 0.07968599745549909 KGPAPALRQ 9 Unmodified _KGPAPALRQ_ 0 0 0 REV__ENST00000410084.7_1_2:231578296-231578380:+|nuORF REV__ENST00000410084.7_1_2:231578296-231578380:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 469.28302001953125 2 469.282526 936.550499 0.20424 9.5845E-05 -0.2122 -9.9583E-05 -0.0079646 -3.7377E-06 469.2821629485803 107.57 0.079567 111.25 111.23 111.3 3.6783 18 11 2 0 0 0 0.36392 1 25430 25430 10.074 1.4806 1 2227200 + 16338 22190 10467 10473 19943 19943 0.07968599745549909 KGPAPALRQ 9 Unmodified _KGPAPALRQ_ 0 0 0 REV__ENST00000410084.7_1_2:231578296-231578380:+|nuORF REV__ENST00000410084.7_1_2:231578296-231578380:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 469.7845153808594 2 469.282526 936.550499 0.20118 9.4408E-05 -0.3437 -0.00016129 -0.14253 -6.6886E-05 469.2822531005154 107.58 0.08606 111.27 111.22 111.3 3.6813 19 12 2 0 0 0 0.36392 1 25374 25374 10.074 2.1638 1 2532100 + 16339 22190 10467 10473 19944 19944 0.07968599745549909 KGPARQAK 8 Unmodified _KGPARQAK_ 0 0 0 nc|ENSG00000124839|Q9H0T7-2|RAB17;ENST00000466244.1_1_2:238483664-238484282:-|nuORF;ENSG00000124839|ENST00000264601|RAB17 nc|ENSG00000124839|Q9H0T7-2|RAB17 nc|ENSG00000124839|Q9H0T7-2|RAB17 MULTI-MSMS UPN47_class_I_Rep_2 3 428.261474609375 2 428.261594 854.508634 -0.38289 -0.00016398 0.27756 0.00011887 -0.10533 -4.5108E-05 428.26162356732397 82.601 0.21878 85.999 85.86 86.078 3.3984 60 27 3 0 0 0 0.82752 1 20591 20591 2.3027 0 1 1576800 16340 2491 10468 10474 19945 19945 0.0755604405703707 KGPGRPGR 8 Unmodified _KGPGRPGR_ 0 0 0 ENST00000608937.5_1_9:137000676-137000952:+|nuORF ENST00000608937.5_1_9:137000676-137000952:+|nuORF ENST00000608937.5_1_9:137000676-137000952:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 412.74615478515625 2 412.746111 823.477669 -0.10745 -4.4348E-05 0.33656 0.00013891 0.22911 9.4566E-05 412.74612229208935 75.811 0.86156 79.311 78.976 79.837 3.4996 197 92 3 0 0 0 0.82752 1 17960 17960 12.532 0 1 743580 16341 7700 10469 10475 19946 19946 0.05886890742806372 KGPGRPGR 8 Unmodified _KGPGRPGR_ 0 0 0 ENST00000608937.5_1_9:137000676-137000952:+|nuORF ENST00000608937.5_1_9:137000676-137000952:+|nuORF ENST00000608937.5_1_9:137000676-137000952:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 412.746111 823.477669 0.07591 3.1332E-05 0.066023 2.7251E-05 0.14193 5.8582E-05 412.7460563987795 75.66 0.6105 79.261 79.103 79.713 3.6012 -0.023294 -7.5068E-05 NaN 12.532 143 74 4 NaN NaN NaN NaN 0 NaN NaN 0 789170 16342 7700 10469 10475 0.05886890742806372 KGPGRPGR 8 Unmodified _KGPGRPGR_ 0 0 0 ENST00000608937.5_1_9:137000676-137000952:+|nuORF ENST00000608937.5_1_9:137000676-137000952:+|nuORF ENST00000608937.5_1_9:137000676-137000952:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 412.746111 823.477669 0.14254 5.8833E-05 0.071985 2.9711E-05 0.21453 8.8545E-05 412.7459920465495 75.715 0.88036 79.28 78.904 79.784 3.5658 -0.0035649 -7.0147E-05 NaN 12.532 156 94 2 NaN NaN NaN NaN 0 NaN NaN 0 674280 16343 7700 10469 10475 0.05886890742806372 KGPGVRGR 8 Unmodified _KGPGVRGR_ 0 0 0 ENST00000222005.6_1_19:10501827-10502160:-|nuORF ENST00000222005.6_1_19:10501827-10502160:-|nuORF ENST00000222005.6_1_19:10501827-10502160:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 413.7538757324219 2 413.753936 825.493319 -0.009744 -4.0316E-06 0.09916 4.1028E-05 0.089416 3.6996E-05 413.75386555264834 76.633 1.1967 80.048 79.526 80.723 3.4149 225 106 3 0 0 0 0.82752 1 18963 18963 2.3027 0 1 508720 16344 5872 10470 10476 19947 19947 0.07359177259854732 KGPHKKKK 8 Unmodified _KGPHKKKK_ 0 0 0 REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 475.81890869140625 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 39.091 1 42.596 42.096 43.096 3.5048 0 0 0 0.40746 1 6859 6859 0.69038 0.69038 1 + 16345 28772 10471 10477 19948 19948 0.14169469396222212 KGPHKKKK 8 Unmodified _KGPHKKKK_ 0 0 0 REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 475.8582763671875 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 39.321 1 42.826 42.326 43.326 3.5048 0 0 0 0.40746 1 6928 6928 0.69038 0.69038 1 + 16346 28772 10471 10477 19949 19949 0.14169469396222212 KGPHKKKK 8 Unmodified _KGPHKKKK_ 0 0 0 REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 475.8179626464844 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 39.8 1 43.304 42.804 43.804 3.5048 0 0 0 0.40746 1 7070 7070 0.69038 0.69038 1 + 16347 28772 10471 10477 19950 19950 0.14169469396222212 KGPHKKKK 8 Unmodified _KGPHKKKK_ 0 0 0 REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 475.779052734375 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 41.226 1 44.732 44.232 45.232 3.506 0 0 0 0.40746 1 7488 7488 0.69038 0.69038 1 + 16348 28772 10471 10477 19951 19951 0.14169469396222212 KGPIAPDCP 9 Unmodified _KGPIAPDCP_ 0 0 0 REV__L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|23|3|sense REV__L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|23|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 449.7608337402344 2 449.228571 896.442588 0.1787 8.0277E-05 2.0747 0.00093203 2.2534 0.0010123 449.2293695661676 108.93 0.26008 112.54 112.33 112.59 3.6046 29 23 2 0 0 0 0.11705 1 26752 26752 10.824 2.2306 1 3053100 + 16349 27835 10472 10478 19952 19952 -0.009775329000376587 KGPIAPDCP 9 Unmodified _KGPIAPDCP_ 0 0 0 REV__L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|23|3|sense REV__L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 449.228571 896.442588 0.020773 9.332E-06 2.8908 0.0012986 2.9116 0.001308 449.22980387668804 109.03 0.30791 112.56 112.4 112.71 3.5333 0.016378 0.0001275 NaN 10.824 52 37 2 NaN NaN NaN NaN 0 NaN NaN 0 1967700 + 16350 27835 10472 10478 -0.009775329000376587 KGPIAPDCP 9 Unmodified _KGPIAPDCP_ 0 0 0 REV__L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|23|3|sense REV__L1ME2_dup1465|chr2:68197053-68197656:-|1.381035508192367|0.0297271716631014|5.54|151.0|23|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 449.228571 896.442588 0.14786 6.6423E-05 2.6844 0.0012059 2.8322 0.0012723 449.2296026294906 108.87 0.18385 112.54 112.44 112.63 3.6746 -0.0035305 -5.8002E-05 NaN 10.824 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3111400 + 16351 27835 10472 10478 -0.009775329000376587 KGPICPVVG 9 Unmodified _KGPICPVVG_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 435.2498474121094 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 75.165 1 75.165 74.665 75.665 0 0 0 0 0.38299 1 17461 17461 4.756 1.4747 1 + 16352 25368 10473 10479 19953 19953 0.04455647859299461 KGPICPVVG 9 Unmodified _KGPICPVVG_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 435.2508850097656 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 70.32 1 73.839 73.339 74.339 3.5185 0 0 0 0.35339 1 16266 16266 7.9102 5.3327 1 + 16353 25368 10473 10479 19954 19954 0.04455647859299461 KGPICPVVG 9 Unmodified _KGPICPVVG_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 435.2507629394531 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 70.792 1 74.311 73.811 74.811 3.5185 0 0 0 0.35339 1 16399 16399 7.9102 4.6288 1 + 16354 25368 10473 10479 19955 19955 0.04455647859299461 KGPICPVVG 9 Unmodified _KGPICPVVG_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 435.25115966796875 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 70.93 1 74.448 73.948 74.948 3.5185 0 0 0 0.35339 1 16436 16436 7.9102 3.1541 1 + 16355 25368 10473 10479 19956 19956 0.04455647859299461 KGPLFLAIL 9 Unmodified _KGPLFLAIL_ 0 0 0 REV__MER83B-int_dup22|chr2:135072211-135074671:-|2.36335104271048|0.0598068717952759|5.3|151.0|38|2|sense REV__MER83B-int_dup22|chr2:135072211-135074671:-|2.36335104271048|0.0598068717952759|5.3|151.0|38|2|sense MSMS UPN48_class_I_Rep_3 7 486.31585693359375 2 486.318046 970.621539 NaN NaN NaN NaN NaN NaN NaN 68.702 1 72.211 71.711 72.711 3.5094 0 0 0 0.35339 1 15772 15772 7.9102 0 1 + 16356 31566 10474 10480 19957 19957 0.13505299730354636 KGPLKEQPLP 10 Unmodified _KGPLKEQPLP_ 0 0 0 REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B MSMS UPN47_class_I_Rep_2 3 553.830322265625 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 82.2 1 85.598 85.098 86.098 3.3984 0 0 0 0.53105 1 20489 20489 1.4819 0.68827 1 + 16357 32127 10475 10481 19958 19958 0.10094577919812764 KGPLKEQPLP 10 Unmodified _KGPLKEQPLP_ 0 0 0 REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B MSMS UPN48_class_I_Rep_3 7 553.8299560546875 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 82.177 1 85.862 85.362 86.362 3.685 0 0 0 0.53105 1 19471 19471 3.2813 0.28607 1 + 16358 32127 10475 10481 19959 19959 0.10094577919812764 KGPLPSILNKE 11 Unmodified _KGPLPSILNKE_ 0 0 0 REV__L1PA14_dup664|chr3:151520505-151524783:+|2.4610899078482427|0.0817751117817116|4.91|136.0|237|2|anti-sense REV__L1PA14_dup664|chr3:151520505-151524783:+|2.4610899078482427|0.0817751117817116|4.91|136.0|237|2|anti-sense MSMS UPN47_class_I_Rep_2 3 598.358154296875 2 598.355888 1194.69722 NaN NaN NaN NaN NaN NaN NaN 85.115 1 88.538 88.038 89.038 3.4232 0 0 0 0.38417 1 21188 21188 2.2828 0.80087 1 + 16359 29177 10476 10482 19960 19960 0.10766232119999586 KGPNKLKDL 9 Unmodified _KGPNKLKDL_ 0 0 0 REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 506.26092529296875 2 506.811116 1011.60768 0.18799 9.5273E-05 -0.45753 -0.00023188 -0.26954 -0.00013661 506.81067136563513 55.959 0.23983 59.437 59.257 59.497 3.4785 18 13 2 0 0 0 0.12462 1 12706 12706 1.8442 0.19162 1 61481 + 16360 18265 10477 10483 19961 19961 0.10234022231270501 KGPNLLMP 8 Unmodified _KGPNLLMP_ 0 0 0 HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|171|3|anti-sense HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|171|3|anti-sense HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|171|3|anti-sense MSMS UPN46_class_I_Rep_3 1 435.2510986328125 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 74.928 1 74.928 74.428 75.428 0 0 0 0 0.40604 1 17394 17394 2.5775 0.27475 1 16361 8229 10478 10484 19962 19962 0.04455647859288092 KGPNNKQK 8 Unmodified _KGPNNKQK_ 0 0 0 REV__MER4-int_dup2013|chr11:3116876-3118164:+|2.456044673551158|0.1728620349755731|3.83|151.0|65|2|anti-sense REV__MER4-int_dup2013|chr11:3116876-3118164:+|2.456044673551158|0.1728620349755731|3.83|151.0|65|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 457.2641296386719 2 457.264333 912.514114 0.17738 8.1107E-05 0.1403 6.4156E-05 0.31768 0.00014526 457.26418404281094 76.332 1.2487 76.332 75.776 77.025 0 199 124 3 0 0 0 0.82752 1 17788 17788 4.756 0 1 304550 + 16362 31277 10479 10485 19963 19963 0.05435722848858404 KGPNNKQK 8 Unmodified _KGPNNKQK_ 0 0 0 REV__MER4-int_dup2013|chr11:3116876-3118164:+|2.456044673551158|0.1728620349755731|3.83|151.0|65|2|anti-sense REV__MER4-int_dup2013|chr11:3116876-3118164:+|2.456044673551158|0.1728620349755731|3.83|151.0|65|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.26458740234375 2 457.264333 912.514114 0.076907 3.5167E-05 1.2069 0.00055188 1.2838 0.00058705 457.2647414782004 74.332 0.55753 77.726 77.637 78.195 3.3937 68 50 2 0 0 0 0.82752 1 18290 18290 2.3027 0 1 238790 + 16363 31277 10479 10485 19964 19964 0.05435722848858404 KGPRKQAQ 8 Unmodified _KGPRKQAQ_ 0 0 0 REV__L1M4c_dup1443|chr7:99020488-99022081:+|2.87939544213297|0.1140937209118722|4.66|151.0|2|1|sense REV__L1M4c_dup1443|chr7:99020488-99022081:+|2.87939544213297|0.1140937209118722|4.66|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 456.77227783203125 2 456.772326 911.530098 0.19965 9.1193E-05 -0.23913 -0.00010923 -0.039484 -1.8035E-05 456.77217101254837 84.393 0.39995 84.393 84.314 84.714 0 72 37 2 0 0 0 0.82752 1 20130 20130 2.3027 0 1 729700 + 16364 24578 10480 10486 19965 19965 0.07079429085740685 KGPSFELHQC 10 Unmodified _KGPSFELHQC_ 0 0 0 REV__MLT1E2_dup1553|chr6:110968668-110969133:-|1.21862141259182|0.3013226908105041|2.02|151.0|6|1|sense REV__MLT1E2_dup1553|chr6:110968668-110969133:-|1.21862141259182|0.3013226908105041|2.02|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 573.3265991210938 2 573.274041 1144.53353 NaN NaN NaN NaN NaN NaN NaN 99.072 1 99.072 98.572 99.572 0 0 0 0 0.53105 1 24129 24129 1.4819 0.79152 1 + 16365 31696 10481 10487 19966 19966 -0.03295688922548834 KGQSKSFLR 9 Unmodified _KGQSKSFLR_ 0 0 0 Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|54|3|sense Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|54|3|sense Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|54|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.8055419921875 2 525.806365 1049.59818 -0.18884 -9.9293E-05 -0.52364 -0.00027533 -0.71247 -0.00037462 525.8058373835784 12.971 0.17933 16.421 16.334 16.513 3.45 17 14 2 0 0 0 0.48846 1 201 201 1.8442 0 1 32579 16366 33111 10482 10488 19967 19967 0.07536253945750104 KGQTKQNKN 9 Unmodified _KGQTKQNKN_ 0 0 0 L1MB3_dup785|chr1:112554316-112555155:+|1.035818197785191|0.1179348821059127|3.13|151.0|30|3|sense L1MB3_dup785|chr1:112554316-112555155:+|1.035818197785191|0.1179348821059127|3.13|151.0|30|3|sense L1MB3_dup785|chr1:112554316-112555155:+|1.035818197785191|0.1179348821059127|3.13|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 523.3037719726562 2 523.291079 1044.56761 NaN NaN NaN NaN NaN NaN NaN 80.602 1 80.602 80.102 81.102 0 0 0 0 0.38784 1 18995 18995 3.5965 0 1 16367 10455 10483 10489 19968 19968 0.04710475560705163 KGQWKKFFIFL 11 Unmodified _KGQWKKFFIFL_ 0 0 0 REV__L1MC5_dup10035|chr11:43473912-43474639:+|3.085464747580536|0.0926806350183242|5.06|151.0|4|1|sense REV__L1MC5_dup10035|chr11:43473912-43474639:+|3.085464747580536|0.0926806350183242|5.06|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 481.6176452636719 3 481.283336 1440.82818 0.24773 0.00011923 0.16423 7.9042E-05 0.41196 0.00019827 481.28337936932115 94.368 0.38029 98.119 97.781 98.162 3.7508 64 49 2 0 0 0 22.551 1 23421 23421 0.50596 0.41111 1 181060 + 16368 27045 10484 10490 19969 19969 0.1253966755868987 KGQYAHIY 8 Unmodified _KGQYAHIY_ 0 0 0 REV__ENST00000310862.11_1_13:45985586-45985901:-|nuORF REV__ENST00000310862.11_1_13:45985586-45985901:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.75482177734375 2 490.253434 978.492316 -0.35455 -0.00017382 -0.34036 -0.00016686 -0.69491 -0.00034068 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 1 6492 6492 2.5775 0.27475 1 61780 + 16369 21706 10485 10491 19970 19970 0.002209181002740479 KGRILRCKKK 10 Unmodified _KGRILRCKKK_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|83|2|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|83|2|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|83|2|sense MSMS UPN48_class_I_Rep_2 6 615.4031982421875 2 615.402984 1228.79141 NaN NaN NaN NaN NaN NaN NaN 73.917 1 77.495 76.995 77.995 3.5779 0 0 0 0.53105 1 17374 17374 1.4819 1.0812 1 16370 13766 10486 10492 19971 19971 0.18617092461113316 KGRKHPKG 8 Unmodified _KGRKHPKG_ 0 0 0 ENST00000478441.1_1_3:186333572-186335301:+|nuORF ENST00000478441.1_1_3:186333572-186335301:+|nuORF ENST00000478441.1_1_3:186333572-186335301:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 453.7848815917969 2 454.28286 906.551168 -0.14332 -6.5108E-05 -2.1474 -0.00097551 -2.2907 -0.0010406 454.2795808660363 70.71 0.037727 73.993 73.973 74.011 3.2828 5 3 2 0 0 0 0.72333 1 17249 17249 0 0 1 18558 16371 6983 10487 10493 19972 19972 0.0941543918527259 KGRLPKIAL 9 Unmodified _KGRLPKIAL_ 0 0 0 REV__HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense REV__HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 498.3399963378906 2 498.339844 994.665135 0.050285 2.5059E-05 -0.47096 -0.0002347 -0.42067 -0.00020964 498.33948203127824 30.119 0.046738 30.119 30.105 30.152 0 5 3 2 0 0 0 0.12551 1 4868 4868 0 0 1 68697 + 16372 23790 10488 10494 19973 19973 0.1675890922747385 KGRNKRTFV 9 Unmodified _KGRNKRTFV_ 0 0 0 REV__L1MDa_dup4619|chr10:52713204-52714627:-|2.68226169378925|0.0069487129538904|8.59|146.0|95|3|anti-sense REV__L1MDa_dup4619|chr10:52713204-52714627:-|2.68226169378925|0.0069487129538904|8.59|146.0|95|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.3330688476562 2 553.333082 1104.65161 NaN NaN NaN NaN NaN NaN NaN 87.746 1 91.557 91.057 92.057 3.8104 0 0 0 0.39598 1 20821 20821 1.6526 0.17072 1 + 16373 27530 10489 10495 19974 19974 0.10347051448275124 KGRPANFL 8 Unmodified _KGRPANFL_ 0 0 0 REV__nc|ENSG00000111641|P46087-2|NOP2 REV__nc|ENSG00000111641|P46087-2|NOP2 MSMS UPN47_class_I_Rep_3 4 451.76275634765625 2 451.763969 901.513385 NaN NaN NaN NaN NaN NaN NaN 50.105 1 53.331 52.831 53.831 3.2262 0 0 0 0.4044 1 11040 11040 4.756 0.42677 1 + 16374 18459 10490 10496 19975 19975 0.05868928199799939 KGRPGHGV 8 Unmodified _KGRPGHGV_ 0 0 0 REV__Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|134|3|sense REV__Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|134|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 404.23291015625 2 404.232836 806.45112 0.036034 1.4566E-05 0.1801 7.2801E-05 0.21613 8.7367E-05 404.23278676260855 76.356 0.5022 76.356 76.118 76.62 0 67 45 2 0 0 0 0.82752 1 17781 17781 0.79363 0.10326 1 93114 + 16375 23523 10491 10497 19976 19976 0.040152018514731935 KGRSYVSHL 9 Unmodified _KGRSYVSHL_ 0 0 0 REV__LTR10C_dup418|chr16:89391726-89392331:+|2.1688327625688446|0.0383253213142371|5.82|151.0|15|2|sense REV__LTR10C_dup418|chr16:89391726-89392331:+|2.1688327625688446|0.0383253213142371|5.82|151.0|15|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 523.2726440429688 2 523.790715 1045.56688 0.27707 0.00014513 0.13608 7.128E-05 0.41316 0.00021641 524.2921802590929 66.071 0.15816 69.429 69.327 69.485 3.3576 10 9 2 0 0 0 0.12321 1 15808 15808 3.9444 1.3669 1 39611 + 16376 30786 10492 10498 19977 19977 0.04591680911653384 KGSSLLQCK 9 Unmodified _KGSSLLQCK_ 0 0 0 REV__ENSG00000249859.12,PVT1,chr8,+,I15.1,127902540,127912003|102|13.76|2|intron REV__ENSG00000249859.12,PVT1,chr8,+,I15.1,127902540,127912003|102|13.76|2|intron MSMS UPN47_class_I_Rep_3 4 482.2684326171875 2 482.268227 962.521901 NaN NaN NaN NaN NaN NaN NaN 31.519 1 34.818 34.318 35.318 3.2991 0 0 0 0.39598 1 5382 5382 1.6526 0.85899 1 + 16377 21354 10493 10499 19978 19978 0.03914114054111906 KGSTRFITN 9 Unmodified _KGSTRFITN_ 0 0 0 REV__L1PA11_dup1123|chr4:142597987-142601688:+|1.263039850367669|0.0442159683077336|4.84|150.0|87|3|sense REV__L1PA11_dup1123|chr4:142597987-142601688:+|1.263039850367669|0.0442159683077336|4.84|150.0|87|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 512.2830810546875 2 512.282723 1022.55089 -0.16635 -8.522E-05 -0.0010588 -5.4241E-07 -0.16741 -8.5763E-05 512.2825968423439 19.804 0.76372 19.804 19.383 20.146 0 108 77 2 0 0 0 0.47197 2 1976 1858;1976 3.5965 0 1 74720 + 16378 28998 10494 10500 19979;19980 19980 0.040519746747463614 KGSTSIVVL 9 Unmodified _KGSTSIVVL_ 0 0 0 REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|31|2|anti-sense REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 452.27734375 2 452.279118 902.543683 NaN NaN NaN NaN NaN NaN NaN 70.601 1 73.972 73.472 74.472 3.3713 0 0 0 0.40038 1 17165 17165 0.6015 0.6015 1 + 16379 23276 10495 10501 19981 19981 0.08851242074331367 KGTWVLLY 8 Unmodified _KGTWVLLY_ 0 0 0 L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 490.2855224609375 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 52.451 1 55.656 55.156 56.156 3.2055 0 0 0 0.40625 1 11758 11758 2.3027 0 1 16380 11896 10496 10502 19982 19982 0.06371849799563734 KGTWVLLY 8 Unmodified _KGTWVLLY_ 0 0 0 L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 490.2857666015625 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 57.54 1 60.708 60.208 61.208 3.1681 0 0 0 0.40625 1 13305 13305 2.3027 0 1 16381 11896 10496 10502 19983 19983 0.06371849799563734 KGTWVLLY 8 Unmodified _KGTWVLLY_ 0 0 0 L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense L1MD1_dup1025|chr2:230776265-230776638:-|1.088080797513132|0.0067649805592303|7.33|151.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 490.2860412597656 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 51.668 1 55.307 54.807 55.807 3.639 0 0 0 0.40625 1 10671 10671 2.3027 0 1 16382 11896 10496 10502 19984 19984 0.06371849799563734 KGVHYWEL 8 Unmodified _KGVHYWEL_ 0 0 0 nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000119283|ENST00000366653|TRIM67 nc|ENSG00000119283|Q6ZTA4-2|TRIM67 nc|ENSG00000119283|Q6ZTA4-2|TRIM67 MULTI-SECPEP UPN48_class_I_Rep_1 5 515.8106689453125 2 516.269084 1030.52362 0.2848 0.00014704 -1.3348 -0.00068911 -1.05 -0.00054207 516.2667949400756 38.323 0.094593 41.829 41.761 41.855 3.5052 6 5 2 0 0 0 0.72333 1 6627 6627 2.3027 0.24298 1 20483 16383 2275 10497 10503 19985 19985 0.009574911343634085 KGVKKHFK 8 Unmodified _KGVKKHFK_ 0 0 0 REV__ENSG00000152217|ENST00000649279|SETBP1 REV__ENSG00000152217|ENST00000649279|SETBP1 MSMS UPN46_class_I_Rep_3 1 486.492919921875 2 486.311087 970.60762 NaN NaN NaN NaN NaN NaN NaN 55.084 1 55.084 54.584 55.584 0 0 0 0 0.40625 1 11963 11963 2.3027 0 1 + 16384 19674 10498 10504 19986 19986 0.12114067021934716 KGVKQHKKKR 10 Unmodified _KGVKQHKKKR_ 0 0 0 REV__L1PA7_dup7908|chrX:56145769-56146725:+|1.2222542079933605|0.0154812299426441|6.3|148.0|2|1|sense REV__L1PA7_dup7908|chrX:56145769-56146725:+|1.2222542079933605|0.0154812299426441|6.3|148.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 412.93780517578125 3 412.938562 1235.79386 NaN NaN NaN NaN NaN NaN NaN 50.368 1 50.368 49.868 50.868 0 0 0 0 0.53105 1 10641 10641 0.69767 0.19171 1 + 16385 30162 10499 10505 19987 19987 0.18539264190440008 KGVPIALKGGS 11 Unmodified _KGVPIALKGGS_ 0 0 0 L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|71|3|sense L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|71|3|sense L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|71|3|sense MSMS UPN48_class_I_Rep_1 5 513.8186645507812 2 513.818941 1025.62333 NaN NaN NaN NaN NaN NaN NaN 48.103 1 51.625 51.125 52.125 3.5219 0 0 0 0.38417 1 9578 9578 2.4985 0.43874 1 16386 8655 10500 10506 19988 19988 0.11154308748314179 KGWKNILY 8 Unmodified _KGWKNILY_ 0 0 0 L1MA3_dup6443|chr11:66200370-66200938:+|1.189294574040197|0.0116195356835424|6.68|151.0|2|1|sense L1MA3_dup6443|chr11:66200370-66200938:+|1.189294574040197|0.0116195356835424|6.68|151.0|2|1|sense L1MA3_dup6443|chr11:66200370-66200938:+|1.189294574040197|0.0116195356835424|6.68|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 511.1260986328125 2 511.295102 1020.57565 NaN NaN NaN NaN NaN NaN NaN 34.404 1 34.404 33.904 34.904 0 0 0 0 0.40625 1 6138 6138 2.3027 0.4585 1 16387 9587 10501 10507 19989 19989 0.06618654548128688 KGWLRILHKI 10 Unmodified _KGWLRILHKI_ 0 0 0 REV__L1ME4b_dup18947|chr17:30774582-30774800:+|1.893539996693068|0.1797859642601658|3.4|151.0|11|3|sense REV__L1ME4b_dup18947|chr17:30774582-30774800:+|1.893539996693068|0.1797859642601658|3.4|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 632.4083862304688 2 632.40605 1262.79755 NaN NaN NaN NaN NaN NaN NaN 76.643 1 80.254 79.754 80.754 3.6116 0 0 0 0.53105 1 18101 18101 1.4819 0.15237 1 + 16388 28274 10502 10508 19990 19990 0.17665933964303804 KGWVILLASH 10 Unmodified _KGWVILLASH_ 0 0 0 ENST00000254810.8_2_17:73774350-73774470:-|nuORF ENST00000254810.8_2_17:73774350-73774470:-|nuORF ENST00000254810.8_2_17:73774350-73774470:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.12704 7.1441E-05 -0.2945 -0.00016561 -0.16746 -9.4169E-05 562.3346000908931 27.398 0.094345 27.398 27.378 27.472 0 13 5 3 0 0 0 0.56309 1 4069 4069 1.6526 1.6526 1 178140 16389 5923 10503 10509 19991 19991 0.09854301502286944 KGYLILNIHC 10 Unmodified _KGYLILNIHC_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|38|2|sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|38|2|sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 587.2669677734375 2 587.326076 1172.6376 NaN NaN NaN NaN NaN NaN NaN 62.601 1 65.857 65.357 66.357 3.2558 0 0 0 0.53105 1 14794 14794 1.4819 0.15237 1 16390 8135 10504 10510 19992 19992 0.05818637904962998 KGYRGPPG 8 Unmodified _KGYRGPPG_ 0 0 0 ENSG00000134871|ENST00000360467|COL4A2 ENSG00000134871|ENST00000360467|COL4A2 ENSG00000134871|ENST00000360467|COL4A2 MSMS UPN47_class_I_Rep_1 2 416.2278137207031 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 26.882 1 30.648 30.148 31.148 3.7662 0 0 0 0.40746 1 3914 3914 0.69038 0 1 16391 2872 10505 10511 19993 19993 0.01788379757340408 KHAFKHYCH 9 Unmodified _KHAFKHYCH_ 0 0 0 REV__nc|ENSG00000165731|P07949-2|RET REV__nc|ENSG00000165731|P07949-2|RET MSMS UPN47_class_I_Rep_3 4 586.2517700195312 2 585.78491 1169.55527 NaN NaN NaN NaN NaN NaN NaN 23.792 1 27.143 26.643 27.643 3.3509 0 0 0 0.40038 1 3086 3086 0.6015 0.076735 1 + 16392 20133 10506 10512 19994 19994 -0.022728393833176597 KHALLLKVIK 10 Unmodified _KHALLLKVIK_ 0 0 0 REV__nc|ENSG00000132466|O75179-5|ANKRD17 REV__nc|ENSG00000132466|O75179-5|ANKRD17 MSMS UPN47_class_I_Rep_3 4 581.9059448242188 2 581.905351 1161.79615 NaN NaN NaN NaN NaN NaN NaN 74.696 1 77.942 77.442 78.442 3.2464 0 0 0 0.53105 1 18500 18500 0.40072 0 1 + 16393 19019 10507 10513 19995 19995 0.22172299875546742 KHALLLKVIK 10 Unmodified _KHALLLKVIK_ 0 0 0 REV__nc|ENSG00000132466|O75179-5|ANKRD17 REV__nc|ENSG00000132466|O75179-5|ANKRD17 MSMS UPN48_class_I_Rep_3 7 581.907470703125 2 581.905351 1161.79615 NaN NaN NaN NaN NaN NaN NaN 107.86 1 111.54 111.04 112.04 3.6813 0 0 0 0.53105 1 25470 25470 0.40072 0 1 + 16394 19019 10507 10513 19996 19996 0.22172299875546742 KHAPRWLNL 9 Unmodified _KHAPRWLNL_ 0 0 0 L1ME1_dup10986|chr5:179981997-179982566:-|4.53653030660179|0.2832322656999541|4.0|151.0|5|1|sense L1ME1_dup10986|chr5:179981997-179982566:-|4.53653030660179|0.2832322656999541|4.0|151.0|5|1|sense L1ME1_dup10986|chr5:179981997-179982566:-|4.53653030660179|0.2832322656999541|4.0|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 567.3309936523438 2 567.830175 1133.6458 0.51713 0.00029364 2.7973 0.0015884 3.3144 0.001882 567.8316715562717 81.686 0.14275 85.07 85.025 85.168 3.3839 20 15 2 0 0 0 0.12462 1 20360 20360 1.8442 0.19162 1 145940 16395 12172 10508 10514 19997 19997 0.08431952936598464 KHARPVKA 8 Unmodified _KHARPVKA_ 0 0 0 REV__L1MEc_dup11655|chr10:21570375-21571654:-|1.5199870202914836|0.0089192892935365|7.41|151.0|3|1|sense REV__L1MEc_dup11655|chr10:21570375-21571654:-|1.5199870202914836|0.0089192892935365|7.41|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 453.7850036621094 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 78.065 1 81.494 80.994 81.994 3.4289 0 0 0 0.40746 1 19395 19395 0.69038 0 1 + 16396 28358 10509 10515 19998 19998 0.09936323328031449 KHCLGLRQRR 10 Unmodified _KHCLGLRQRR_ 0 0 0 REV__L1MC5_dup12102|chr14:93310784-93312042:-|1.394363044503548|0.0311127984471011|5.49|151.0|28|2|sense REV__L1MC5_dup12102|chr14:93310784-93312042:-|1.394363044503548|0.0311127984471011|5.49|151.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 633.869873046875 2 633.86984 1265.72513 NaN NaN NaN NaN NaN NaN NaN 87.582 1 91.201 90.701 91.701 3.6187 0 0 0 0.53105 1 20988 20988 1.4819 0 1 + 16397 27058 10510 10516 19999 19999 0.10289276619073462 KHCLKKED 8 Unmodified _KHCLKKED_ 0 0 0 L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|8|1|sense L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|8|1|sense L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 500.7657775878906 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 116.95 1 116.95 116.45 117.45 0 0 0 0 0.40746 1 28969 28969 0.69038 0 1 16398 10286 10511 10517 20000 20000 0.01737229911339 KHCPGLVG 8 Unmodified _KHCPGLVG_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.7182312011719 2 405.718173 809.421793 0.018711 7.5915E-06 1.3034 0.00052881 1.3221 0.0005364 405.71856892799417 70.658 0.23005 70.658 70.515 70.745 0 38 23 2 0 0 0 0.82752 2 16261 16225;16261 9.3474 6.77 1 103100 16399 13094 10512 10518 20001;20002 20002 0.009459215109814068 KHCPGLVG 8 Unmodified _KHCPGLVG_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense MSMS UPN46_class_I_Rep_3 1 405.71856689453125 2 405.718173 809.421793 NaN NaN NaN NaN NaN NaN NaN 70.792 1 70.792 70.292 71.292 0 0 0 0 0.40364 1 16284 16284 5.7604 3.1829 1 16400 13094 10512 10518 20003 20003 0.009459215109814068 KHCPGLVG 8 Unmodified _KHCPGLVG_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 405.7183532714844 2 405.718173 809.421793 -0.055312 -2.2441E-05 0.69685 0.00028272 0.64154 0.00026028 405.71847823529976 65.851 0.52062 69.208 68.89 69.411 3.3576 49 30 2 0 0 0 0.82752 2 15700 15700;15741 9.3474 4.1168 1 73925 16401 13094 10512 10518 20004;20005 20004 0.009459215109814068 KHCPGLVG 8 Unmodified _KHCPGLVG_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 405.2996520996094 2 405.718173 809.421793 -0.67595 -0.00027425 1.3033 0.00052877 0.62734 0.00025452 405.7185728369507 66.164 0.10687 69.423 69.377 69.484 3.2588 9 6 2 0 0 0 0.72333 1 15880 15880 9.3474 4.1168 1 30387 16402 13094 10512 10518 20006 20006 0.009459215109814068 KHCPGLVG 8 Unmodified _KHCPGLVG_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 405.71893310546875 2 405.718173 809.421793 -0.68021 -0.00027598 1.5994 0.00064891 0.9192 0.00037294 405.7188417562011 66.081 0.55113 69.267 68.926 69.477 3.1853 40 33 2 0 0 0 0.82752 1 15923 15923 2.5775 0 1 56148 16403 13094 10512 10518 20007 20007 0.009459215109814068 KHCPGLVG 8 Unmodified _KHCPGLVG_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|50|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 405.718173 809.421793 -0.67801 -0.00027508 1.5956 0.00064738 0.91762 0.0003723 405.71881956725144 65.935 0.4277 69.194 68.963 69.391 3.2588 -0.028785 0.0002805 NaN 2.5775 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 41355 16404 13094 10512 10518 0.009459215109814068 KHCVALFV 8 Unmodified _KHCVALFV_ 0 0 0 L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|57|2|anti-sense L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|57|2|anti-sense L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|57|2|anti-sense MSMS UPN46_class_I_Rep_3 1 458.7652282714844 2 458.757298 915.500044 NaN NaN NaN NaN NaN NaN NaN 111.03 1 111.03 110.53 111.53 0 0 0 0 0.40738 1 27362 27362 0.79363 0 1 16405 11068 10513 10519 20008 20008 0.038913540961971194 KHDLIPFY 8 Unmodified _KHDLIPFY_ 0 0 0 L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|236|3|anti-sense;L1PREC2_dup658|chr2:62767854-62771176:+|1.1357699653157147|0.0833457812901871|3.77|151.0|114|1|anti-sense;L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|268|2|anti-sense L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|236|3|anti-sense L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|236|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.7769165039062 2 516.779285 1031.54402 NaN NaN NaN NaN NaN NaN NaN 40.998 1 44.236 43.736 44.736 3.2372 0 0 0 0.39624 1 8272 8272 9.3474 0 1 16406 13641 10514 10520 20009 20009 0.029506617941933655 KHDVQRLR 8 Unmodified _KHDVQRLR_ 0 0 0 REV__AluSx3_dup22257|chr12:120896494-120896794:+|1.151200753550431|0.0122548695292478|6.55|151.0|6|2|sense REV__AluSx3_dup22257|chr12:120896494-120896794:+|1.151200753550431|0.0122548695292478|6.55|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 526.2918701171875 2 526.309606 1050.60466 NaN NaN NaN NaN NaN NaN NaN 48.067 1 48.067 47.567 48.567 0 0 0 0 0.40643 1 9984 9984 2.0598 1.3694 1 + 16407 17091 10515 10521 20010 20010 0.08138191897114666 KHEILFYF 8 Unmodified _KHEILFYF_ 0 0 0 REV__L1M2_dup7929|chr15:44601891-44602475:-|2.096616355534848|0.3357162583574042|2.64|151.0|6|1|sense REV__L1M2_dup7929|chr15:44601891-44602475:-|2.096616355534848|0.3357162583574042|2.64|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.7943725585938 2 548.794935 1095.57532 0.34931 0.0001917 -0.76491 -0.00041978 -0.4156 -0.00022808 548.7945199723557 41.296 0.76408 44.942 44.491 45.255 3.6458 92 76 2 0 0 0 0.82752 1 7365 7365 4.756 0 1 119330 + 16408 24236 10516 10522 20011 20011 0.031352348282553066 KHEMKPVL 8 Unmodified _KHEMKPVL_ 0 0 0 nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3 nc|ENSG00000134775|Q2V2M9-2|FHOD3 nc|ENSG00000134775|Q2V2M9-2|FHOD3 MSMS UPN48_class_I_Rep_1 5 491.28045654296875 2 491.281137 980.547722 NaN NaN NaN NaN NaN NaN NaN 64.439 1 67.893 67.393 68.393 3.4541 0 0 0 0.40738 1 14587 14587 0.79363 0 1 16409 2867 10517 10523 20012 20012 0.05667008296404674 KHEPKKTFRL 10 Unmodified _KHEPKKTFRL_ 0 0 0 REV__L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|18|1|sense REV__L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|18|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 641.8827514648438 2 642.382771 1282.75099 0.6558 0.00042127 1.7474 0.0011225 2.4032 0.0015437 642.384015842553 88.216 0.13615 92.026 91.956 92.092 3.8104 21 16 2 0 0 0 0.84575 1 20945 20945 2.9952 0 1 149730 + 16410 26788 10518 10524 20013 20013 0.12092449342389955 KHEYWFRY 8 Unmodified _KHEYWFRY_ 0 0 0 REV__L1ME1_dup29746|chr20:35206498-35207357:+|1.1698295159039735|0.3596275593938768|1.7|151.0|61|3|anti-sense REV__L1ME1_dup29746|chr20:35206498-35207357:+|1.1698295159039735|0.3596275593938768|1.7|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 614.796142578125 2 614.79854 1227.58253 NaN NaN NaN NaN NaN NaN NaN 47.871 1 51.22 50.72 51.72 3.3492 0 0 0 0.40472 1 10299 10299 4.3292 0.38484 1 + 16411 27751 10519 10525 20014 20014 -0.02216032571300275 KHFAHFKI 8 Unmodified _KHFAHFKI_ 0 0 0 L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|111|3|anti-sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|111|3|anti-sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|111|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 513.7268676757812 2 514.295436 1026.57632 0.3869 0.00019898 -1.2205 -0.00062769 -0.83359 -0.00042871 514.2947601459654 69.371 0.12518 72.884 72.801 72.926 3.5128 11 9 2 0 0 0 0.72333 1 15968 15968 2.3027 0 1 49070 16412 10969 10520 10526 20015 20015 0.06409493987848691 KHFAHFKI 8 Unmodified _KHFAHFKI_ 0 0 0 L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|111|3|anti-sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|111|3|anti-sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|111|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 514.295436 1026.57632 0.33642 0.00017302 0.21912 0.00011269 0.55554 0.00028571 514.7972590730428 69.313 0.04734 72.835 72.792 72.84 3.5216 -0.024337 0.00090663 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 51877 16413 10969 10520 10526 0.06409493987848691 KHFAKRKA 8 Unmodified _KHFAKRKA_ 0 0 0 REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 493.30621337890625 2 493.306336 984.598118 0.30336 0.00014965 -0.45777 -0.00022582 -0.15441 -7.6173E-05 493.30605527483846 85.894 0.11955 85.894 85.848 85.968 0 13 12 2 0 0 0 0.82752 1 20521 20521 0.69038 0 1 64448 + 16414 18314 10521 10527 20016 20016 0.10520298736412315 KHFILLFE 8 Unmodified _KHFILLFE_ 0 0 0 REV__nc|ENSG00000115468|Q9BUP0-2|EFHD1 REV__nc|ENSG00000115468|Q9BUP0-2|EFHD1 MULTI-SECPEP UPN46_class_I_Rep_3 1 523.3037719726562 2 523.805303 1045.59605 0.32124 0.00016827 0.099219 5.1972E-05 0.42046 0.00022024 523.8053429426926 82.648 0.14487 82.648 82.585 82.73 0 34 14 3 0 0 0 0.72333 1 19582 19582 5.2307 0 1 1015000 + 16415 18566 10522 10528 20017 20017 0.07507825207949281 KHFLFLIE 8 Unmodified _KHFLFLIE_ 0 0 0 L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|70|1|anti-sense L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|70|1|anti-sense L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|70|1|anti-sense MSMS UPN47_class_I_Rep_2 3 523.8050537109375 2 523.805303 1045.59605 NaN NaN NaN NaN NaN NaN NaN 80.138 1 83.508 83.008 84.008 3.3694 0 0 0 0.40404 1 19963 19963 5.2307 0 1 16416 9095 10523 10529 20018 20018 0.07507825207926544 KHFNAHLKIA 10 Unmodified _KHFNAHLKIA_ 0 0 0 nc|ENSG00000213390|Q14CB8-5|ARHGAP19;nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19 nc|ENSG00000213390|Q14CB8-5|ARHGAP19 nc|ENSG00000213390|Q14CB8-5|ARHGAP19 MSMS UPN48_class_I_Rep_1 5 589.8449096679688 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 86.668 1 90.281 89.781 90.781 3.613 0 0 0 0.53105 1 20767 20767 3.2813 1.4371 1 16417 5588 10524 10530 20019 20019 0.09028222108076989 KHFNAHLKIA 10 Unmodified _KHFNAHLKIA_ 0 0 0 nc|ENSG00000213390|Q14CB8-5|ARHGAP19;nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19 nc|ENSG00000213390|Q14CB8-5|ARHGAP19 nc|ENSG00000213390|Q14CB8-5|ARHGAP19 MSMS UPN48_class_I_Rep_1 5 589.844970703125 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 87.051 1 90.669 90.169 91.169 3.6187 0 0 0 0.53105 1 20856 20856 3.2813 0.78282 1 16418 5588 10524 10530 20020 20020 0.09028222108076989 KHFNFKKW 8 Unmodified _KHFNFKKW_ 0 0 0 ENST00000552063.1_1_12:47642928-47643009:+|nuORF ENST00000552063.1_1_12:47642928-47643009:+|nuORF ENST00000552063.1_1_12:47642928-47643009:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.81396484375 2 567.813993 1133.61343 NaN NaN NaN NaN NaN NaN NaN 76.485 1 79.9 79.4 80.4 3.4149 0 0 0 0.40746 1 18930 18930 0.69038 0 1 16419 7404 10525 10531 20021 20021 0.051971655336274125 KHFPVGAN 8 Unmodified _KHFPVGAN_ 0 0 0 L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|10|1|sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|10|1|sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 435.2508850097656 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 70.443 1 73.979 73.479 74.479 3.5359 0 0 0 0.40625 1 16386 16386 2.3027 0 1 16420 14586 10526 10532 20022 20022 0.01604666274374722 KHFPVGAN 8 Unmodified _KHFPVGAN_ 0 0 0 L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|10|1|sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|10|1|sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 435.25115966796875 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 71.823 1 75.373 74.873 75.873 3.5505 0 0 0 0.40625 1 16783 16783 2.3027 0.24298 1 16421 14586 10526 10532 20023 20023 0.01604666274374722 KHFVPLFA 8 Unmodified _KHFVPLFA_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-SECPEP UPN47_class_I_Rep_2 3 479.2779235839844 2 479.779088 957.543623 0.18011 8.6413E-05 0.43119 0.00020687 0.6113 0.00029329 479.7794162099538 75.369 0.90359 78.681 77.829 78.733 3.3127 141 95 2 0 0 0 0.72333 1 18482 18482 5.2307 5.2307 1 247730 16422 885 10527 10533 20024 20024 0.06315286864992231 KHFVPLFA 8 Unmodified _KHFVPLFA_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 479.779088 957.543623 0.15062 7.2264E-05 0.59125 0.00028367 0.74187 0.00035593 479.7793444061851 75.089 0.58794 78.579 78.378 78.966 3.49 -0.051331 7.3911E-05 NaN 5.2307 95 61 2 NaN NaN NaN NaN 0 NaN NaN 0 210700 16423 885 10527 10533 0.06315286864992231 KHFVQASY 8 Unmodified _KHFVQASY_ 0 0 0 REV__L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|101|1|anti-sense REV__L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|101|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.78082275390625 2 490.253434 978.492316 -0.35455 -0.00017382 -0.34036 -0.00016686 -0.69491 -0.00034068 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 1 6466 6466 4.756 1.8668 1 61780 + 16424 26059 10528 10534 20025 20025 0.002209181002854166 KHFYQKRK 8 Unmodified _KHFYQKRK_ 0 0 0 L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|56|2|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|56|2|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|56|2|sense MSMS UPN47_class_I_Rep_3 4 567.8316650390625 2 567.830175 1133.6458 NaN NaN NaN NaN NaN NaN NaN 81.969 1 85.292 84.792 85.792 3.3231 0 0 0 0.40625 1 20536 20536 2.3027 0.24298 1 16425 9717 10529 10535 20026 20026 0.08431952936598464 KHGAGICF 8 Unmodified _KHGAGICF_ 0 0 0 MSTB_dup5718|chr11:14881526-14881923:+|1.124726812583552|0.384214664322197|1.55|151.0|29|3|anti-sense MSTB_dup5718|chr11:14881526-14881923:+|1.124726812583552|0.384214664322197|1.55|151.0|29|3|anti-sense MSTB_dup5718|chr11:14881526-14881923:+|1.124726812583552|0.384214664322197|1.55|151.0|29|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 416.2276916503906 2 416.710348 831.406143 0.10234 4.2644E-05 -0.16041 -6.6844E-05 -0.058075 -2.42E-05 416.7106536540927 66.603 0.21674 70.089 69.911 70.128 3.4866 19 15 2 0 0 0 0.72333 1 15221 15221 0.69038 0 1 47185 16426 16568 10530 10536 20027 20027 -0.016303650060763175 KHGVRVKR 8 Unmodified _KHGVRVKR_ 0 0 0 nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10 nc|ENSG00000160746|Q9NW15-2|ANO10 nc|ENSG00000160746|Q9NW15-2|ANO10 MSMS UPN48_class_I_Rep_1 5 490.3163146972656 2 490.317235 978.619916 NaN NaN NaN NaN NaN NaN NaN 72.669 1 76.142 75.642 76.642 3.4732 0 0 0 0.40746 1 17071 17071 0.69038 0 1 16427 3885 10531 10537 20028 20028 0.1297510348498463 KHGYIFPVR 9 Unmodified _KHGYIFPVR_ 0 0 0 REV__ENST00000594807.5_1_19:14674592-14674910:+|nuORF REV__ENST00000594807.5_1_19:14674592-14674910:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 559.3027954101562 2 558.819276 1115.624 -0.00027655 -1.5454E-07 1.4056 0.00078546 1.4053 0.0007853 558.8202728723245 41.096 0.18446 44.768 44.637 44.821 3.6719 20 15 2 0 0 0 0.46434 1 8226 8226 4.3292 1.0479 1 67330 + 16428 18070 10532 10538 20029 20029 0.07081148188035513 KHHCYLTHSID 11 Unmodified _KHHCYLTHSID_ 0 0 0 REV__L1MC1_dup2170|chr3:15785103-15786368:+|26.813570776396496|0.0873672623336469|8.26|151.0|44|1|anti-sense REV__L1MC1_dup2170|chr3:15785103-15786368:+|26.813570776396496|0.0873672623336469|8.26|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_1 2 451.8831481933594 3 451.883795 1352.62955 NaN NaN NaN NaN NaN NaN NaN 103.65 1 107.42 106.92 107.92 3.7671 0 0 0 0.38417 1 25481 25481 2.8433 0.4085 1 + 16429 26535 10533 10539 20030 20030 -0.032655410824645514 KHHHHNWF 8 Unmodified _KHHHHNWF_ 0 0 0 REV__ENST00000430976.5_1_2:120692515-120702763:+|nuORF REV__ENST00000430976.5_1_2:120692515-120702763:+|nuORF MSMS UPN46_class_I_Rep_3 1 571.7731323242188 2 571.773191 1141.53183 NaN NaN NaN NaN NaN NaN NaN 13.403 1 13.403 12.903 13.903 0 0 0 0 0.40798 1 374 374 0 0 1 + 16430 22291 10534 10540 20031 20031 -0.03327517105640254 KHHITRLQ 8 Unmodified _KHHITRLQ_ 0 0 0 L1MA3_dup6101|chr10:73165626-73167367:-|3.3509692521133654|0.1334760088896764|4.65|151.0|2|1|sense L1MA3_dup6101|chr10:73165626-73167367:-|3.3509692521133654|0.1334760088896764|4.65|151.0|2|1|sense L1MA3_dup6101|chr10:73165626-73167367:-|3.3509692521133654|0.1334760088896764|4.65|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 516.8060913085938 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 93.706 1 97.174 96.674 97.674 3.4687 0 0 0 0.40472 1 23117 23117 4.3292 0.73274 1 16431 9580 10535 10541 20032 20032 0.08431093385456734 KHHKRYKRFKF 11 Unmodified _KHHKRYKRFKF_ 0 0 0 REV__L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|82|2|sense REV__L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|82|2|sense MSMS UPN46_class_I_Rep_3 1 525.6437377929688 3 525.644149 1573.91062 NaN NaN NaN NaN NaN NaN NaN 100.56 1 100.56 100.06 101.06 0 0 0 0 0.38417 1 24513 24513 0.45452 0.35968 1 + 16432 29925 10536 10542 20033 20033 0.14662002410159403 KHHRLSLIM 9 Unmodified _KHHRLSLIM_ 0 0 0 L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|112|3|sense L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|112|3|sense L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|112|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 567.3294067382812 2 567.83186 1133.64917 0.48506 0.00027543 -0.42432 -0.00024094 0.060735 3.4487E-05 567.831612633606 83.955 0.65071 87.637 87.47 88.121 3.6814 116 79 2 0 0 0 0.12321 1 19967 19967 3.9444 3.9444 1 302460 16433 15162 10537 10543 20034 20034 0.08768879718945755 KHHRLSLIM 9 Unmodified _KHHRLSLIM_ 0 0 0 L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|112|3|sense L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|112|3|sense L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|112|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.833251953125 2 567.83186 1133.64917 0.4836 0.00027461 0.84854 0.00048183 1.3321 0.00075644 567.8323566654799 81.404 0.11227 85.089 85.06 85.172 3.685 22 14 2 0 0 0 0.46869 1 19283 19283 3.9444 0.3479 1 129830 16434 15162 10537 10543 20035 20035 0.08768879718945755 KHHRVWLI 8 Unmodified _KHHRVWLI_ 0 0 0 MLT1A0_dup16614|chr13:113227186-113227536:-|1.3865848408660189|0.2233177414992567|2.63|151.0|21|3|anti-sense MLT1A0_dup16614|chr13:113227186-113227536:-|1.3865848408660189|0.2233177414992567|2.63|151.0|21|3|anti-sense MLT1A0_dup16614|chr13:113227186-113227536:-|1.3865848408660189|0.2233177414992567|2.63|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_3 4 544.8259887695312 2 544.827435 1087.64032 NaN NaN NaN NaN NaN NaN NaN 90.466 1 93.864 93.364 94.364 3.3976 0 0 0 0.40746 1 22672 22672 0.69038 0 1 16435 16250 10538 10544 20036 20036 0.10000274144795185 KHICKLCI 8 Unmodified _KHICKLCI_ 0 0 0 L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|45|2|sense L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|45|2|sense L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|45|2|sense MSMS UPN47_class_I_Rep_1 2 479.2693176269531 2 479.272258 956.529963 NaN NaN NaN NaN NaN NaN NaN 34.932 1 38.618 38.118 39.118 3.6859 0 0 0 0.40746 1 6347 6347 0.69038 0 1 16436 10114 10539 10545 20037 20037 0.04995969769868225 KHICLLHIYK 10 Unmodified _KHICLLHIYK_ 0 0 0 REV__L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|50|2|sense REV__L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|50|2|sense MSMS UPN48_class_I_Rep_3 7 634.3603515625 2 634.370818 1266.72708 NaN NaN NaN NaN NaN NaN NaN 87.429 1 91.22 90.72 91.72 3.7905 0 0 0 0.53105 1 20747 20747 1.4819 0.95714 1 + 16437 25055 10540 10546 20038 20038 0.10438892584329551 KHIDVVYP 8 Unmodified _KHIDVVYP_ 0 0 0 L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 485.75616455078125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 21.808 1 25.483 24.983 25.983 3.6749 0 0 0 0.40738 1 2428 2428 0.79363 0 1 16438 12183 10541 10547 20039 20039 0.0423837527713431 KHIDVVYP 8 Unmodified _KHIDVVYP_ 0 0 0 L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 485.7716064453125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 23.334 1 26.894 26.394 27.394 3.5605 0 0 0 0.40738 1 2419 2419 0.79363 0 1 16439 12183 10541 10547 20040 20040 0.0423837527713431 KHIDVVYP 8 Unmodified _KHIDVVYP_ 0 0 0 L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 485.77203369140625 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 114.08 1 117.71 117.21 118.21 3.6301 0 0 0 0.40738 1 27729 27729 0.79363 0 1 16440 12183 10541 10547 20041 20041 0.0423837527713431 KHIDVVYP 8 Unmodified _KHIDVVYP_ 0 0 0 L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 485.7724304199219 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 111.77 1 115.44 114.94 115.94 3.6666 0 0 0 0.40738 1 26597 26597 0.79363 0 1 16441 12183 10541 10547 20042 20042 0.0423837527713431 KHIERRPP 8 Unmodified _KHIERRPP_ 0 0 0 REV__L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|48|3|sense REV__L1M1_dup2105|chr3:195355937-195357733:+|2.925307639759629|0.0150047763973274|7.61|151.0|48|3|sense MSMS UPN48_class_I_Rep_2 6 516.80615234375 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 94.332 1 98.108 97.608 98.608 3.7761 0 0 0 0.40643 1 22429 22429 2.0598 0 1 + 16442 24034 10542 10548 20043 20043 0.08431093385456734 KHIFLFIA 8 Unmodified _KHIFLFIA_ 0 0 0 MER75_dup273|chrX:74002431-74002912:+|1.4439430619558666|0.4835666767416693|1.58|151.0|5|2|sense MER75_dup273|chrX:74002431-74002912:+|1.4439430619558666|0.4835666767416693|1.58|151.0|5|2|sense MER75_dup273|chrX:74002431-74002912:+|1.4439430619558666|0.4835666767416693|1.58|151.0|5|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 494.3009948730469 2 494.802563 987.590573 0.40547 0.00020063 -0.69947 -0.0003461 -0.29401 -0.00014547 494.80229405267295 88.718 0.24989 92.171 92.154 92.404 3.4525 53 34 2 0 0 0 0.72333 1 22099 22099 2.5775 0 1 211030 16443 16208 10543 10549 20044 20044 0.09628146416116579 KHIHLFKIFLY 11 Unmodified _KHIHLFKIFLY_ 0 0 0 L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|70|1|anti-sense L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|70|1|anti-sense L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.95867919921875 3 486.958852 1457.85473 0.23721 0.00011551 0.50851 0.00024763 0.74573 0.00036314 486.95892782905 94.359 0.53771 98.26 98.217 98.755 3.9016 113 72 2 0 0 0 0.68478 1 22361 22361 0.094841 0 1 220080 16444 11629 10544 10550 20045 20045 0.14411356450045787 KHIHPIVG 8 Unmodified _KHIHPIVG_ 0 0 0 REV__nc|ENSG00000105968|Q71UI9-3|H2AZ2 REV__nc|ENSG00000105968|Q71UI9-3|H2AZ2 MSMS UPN47_class_I_Rep_1 2 450.77642822265625 2 450.774337 899.534121 NaN NaN NaN NaN NaN NaN NaN 85.319 1 88.911 88.411 89.411 3.5914 0 0 0 0.40738 1 21306 21306 0.79363 0 1 + 16445 18311 10545 10551 20046 20046 0.08033518579475185 KHIHPIVG 8 Unmodified _KHIHPIVG_ 0 0 0 REV__nc|ENSG00000105968|Q71UI9-3|H2AZ2 REV__nc|ENSG00000105968|Q71UI9-3|H2AZ2 MSMS UPN47_class_I_Rep_3 4 450.77630615234375 2 450.774337 899.534121 NaN NaN NaN NaN NaN NaN NaN 86.434 1 89.814 89.314 90.314 3.3801 0 0 0 0.40738 1 21664 21664 0.79363 0 1 + 16446 18311 10545 10551 20047 20047 0.08033518579475185 KHIKCRFK 8 Unmodified _KHIKCRFK_ 0 0 0 REV__ENST00000485889.1_1_3:37035756-37038145:+|nuORF REV__ENST00000485889.1_1_3:37035756-37038145:+|nuORF MSMS UPN46_class_I_Rep_3 1 530.3167114257812 2 530.315846 1058.61714 NaN NaN NaN NaN NaN NaN NaN 111.39 1 111.39 110.89 111.89 0 0 0 0 0.40746 1 27463 27463 0.69038 0 1 + 16447 22601 10546 10552 20048 20048 0.0901751203580261 KHIKRCLLS 9 Unmodified _KHIKRCLLS_ 0 0 0 L1ME1_dup24932|chr14:71002359-71003077:-|1.1323183593273132|0.0314255175828182|5.17|151.0|1|1|sense L1ME1_dup24932|chr14:71002359-71003077:-|1.1323183593273132|0.0314255175828182|5.17|151.0|1|1|sense L1ME1_dup24932|chr14:71002359-71003077:-|1.1323183593273132|0.0314255175828182|5.17|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 549.33642578125 2 549.334236 1096.65392 NaN NaN NaN NaN NaN NaN NaN 23.057 1 23.057 22.557 23.557 0 0 0 0 0.39598 1 2833 2833 1.6526 0 1 16448 12325 10547 10553 20049 20049 0.1094576386171866 KHILLVVLKKM 11 Unmodified _KHILLVVLKKM_ 0 0 0 REV__Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|84|1|anti-sense REV__Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|84|1|anti-sense MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.296588 1320.86793 NaN NaN NaN NaN NaN NaN NaN 91.045 1 94.446 93.946 94.946 3.401 0 0 0 0.38417 1 22790 22790 0.45452 0.29519 1 + 16449 32498 10548 10554 20050 20050 0.22033471237728008 KHILPGVM 8 Unmodified _KHILPGVM_ 0 0 0 L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 447.7653503417969 2 447.765123 893.515694 0.14018 6.2768E-05 1.2687 0.00056808 1.4089 0.00063085 447.7655182713572 81.398 0.20375 85.055 84.909 85.113 3.6567 33 25 2 0 0 0 0.82752 1 19324 19324 2.8892 0 1 362520 16450 9946 10549 10555 20051 20051 0.06467640613254844 KHILPGVM 8 Unmodified _KHILPGVM_ 0 0 0 L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 447.765123 893.515694 0.17828 7.9827E-05 1.1232 0.00050292 1.3014 0.00058274 447.76552704735616 85.369 0.18169 85.369 85.271 85.452 0 0.099476 2.3385E-05 NaN 2.8892 28 16 3 NaN NaN NaN NaN 0 NaN NaN 0 295980 16451 9946 10549 10555 0.06467640613254844 KHILPGVM 8 Unmodified _KHILPGVM_ 0 0 0 L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 447.765123 893.515694 0.10103 4.5238E-05 1.0137 0.00045389 1.1147 0.00049912 447.76541493492925 81.785 0.55249 85.297 85.051 85.604 3.5122 0.02768 -7.4677E-05 NaN 2.8892 83 62 2 NaN NaN NaN NaN 0 NaN NaN 0 154900 16452 9946 10549 10555 0.06467640613254844 KHILPGVM 8 Unmodified _KHILPGVM_ 0 0 0 L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 447.765123 893.515694 0.14018 6.2768E-05 1.2687 0.00056808 1.4089 0.00063085 447.7655182713572 81.398 0.20375 85.055 84.909 85.113 3.6567 -0.2152 0.00015372 NaN 2.8892 33 25 2 NaN NaN NaN NaN 0 NaN NaN 0 362520 16453 9946 10549 10555 0.06467640613254844 KHILPGVM 8 Unmodified _KHILPGVM_ 0 0 0 L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense L1MA5A_dup3256|chr19:51232809-51234025:-|1.0880195527590857|0.0408302944846634|4.74|150.0|47|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 447.765123 893.515694 0.19323 8.6522E-05 1.0632 0.00047605 1.2564 0.00056257 447.76548430346645 81.673 0.19762 85.358 85.286 85.483 3.685 0.088047 -3.0351E-05 NaN 2.8892 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 573330 16454 9946 10549 10555 0.06467640613254844 KHIPKTTK 8 Unmodified _KHIPKTTK_ 0 0 0 L1MB8_dup3147|chr3:125239224-125240116:+|1.8177523195877687|0.0843624201924425|4.43|151.0|19|2|sense L1MB8_dup3147|chr3:125239224-125240116:+|1.8177523195877687|0.0843624201924425|4.43|151.0|19|2|sense L1MB8_dup3147|chr3:125239224-125240116:+|1.8177523195877687|0.0843624201924425|4.43|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 476.79937744140625 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 116.57 1 116.57 116.07 117.07 0 0 0 0 0.40604 1 28861 28861 2.5775 0 1 16455 10991 10550 10556 20052 20052 0.10882056922400807 KHIRQYIRR 9 Unmodified _KHIRQYIRR_ 0 0 0 REV__L1M5_dup29816|chr9:111459793-111460928:+|1.005017449112951|0.0104547263817976|6.59|151.0|70|2|anti-sense REV__L1M5_dup29816|chr9:111459793-111460928:+|1.005017449112951|0.0104547263817976|6.59|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_1 5 635.3841552734375 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 81.358 1 84.92 84.42 85.42 3.5624 0 0 0 0.4007 1 19397 19397 0.52476 0 1 + 16456 24647 10551 10557 20053 20053 0.13417807013570382 KHKAVLFK 8 Unmodified _KHKAVLFK_ 0 0 0 ENST00000553573.1_1_14:35286051-35295300:-|nuORF ENST00000553573.1_1_14:35286051-35295300:-|nuORF ENST00000553573.1_1_14:35286051-35295300:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.81201171875 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 69.994 1 73.27 72.77 73.77 3.2761 0 0 0 0.40746 1 17028 17028 0.69038 0 1 16457 7413 10552 10558 20054 20054 0.12634951164693575 KHKEGIYSK 9 Unmodified _KHKEGIYSK_ 0 0 0 nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS UPN47_class_I_Rep_1 2 545.2295532226562 2 545.306198 1088.59784 NaN NaN NaN NaN NaN NaN NaN 114.77 1 118.35 117.85 118.85 3.5809 0 0 0 0.39598 1 28369 28369 1.6526 0.85899 1 16458 2162 10553 10559 20055 20055 0.057088342259021374 KHKERKQRR 9 Unmodified _KHKERKQRR_ 0 0 0 REV__nc|ENSG00000132970|Q9UPY6-2|WASF3 REV__nc|ENSG00000132970|Q9UPY6-2|WASF3 MULTI-MSMS UPN48_class_I_Rep_1 5 633.3695068359375 2 633.386711 1264.75887 0.44528 0.00028204 0.69478 0.00044007 1.1401 0.0007221 633.3868932034775 86.152 0.75278 89.765 89.232 89.985 3.613 107 82 2 0 0 0 0.47206 1 20640 20640 5.7319 5.7319 1 146000 + 16459 31982 10554 10560 20056 20056 0.13708021382490188 KHKKGMAA 8 Unmodified _KHKKGMAA_ 0 0 0 REV__ENST00000495265.5_1_5:889867-892820:-|nuORF REV__ENST00000495265.5_1_5:889867-892820:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 435.25103759765625 2 435.752547 869.490542 0.0049689 2.1652E-06 0.23924 0.00010425 0.24421 0.00010641 435.75267592610084 70.451 0.26236 73.822 73.783 74.045 3.3713 37 24 2 0 0 0 0.72333 1 17149 17149 2.3027 2.3027 1 76358 + 16460 22651 10555 10561 20057 20057 0.05057585810675391 KHKKGMAA 8 Unmodified _KHKKGMAA_ 0 0 0 REV__ENST00000495265.5_1_5:889867-892820:-|nuORF REV__ENST00000495265.5_1_5:889867-892820:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 435.752547 869.490542 0.099913 4.3538E-05 0.15372 6.6985E-05 0.25364 0.00011052 435.75260586092213 69.98 0.17474 73.502 73.385 73.56 3.5216 -0.16007 -4.3913E-05 NaN 2.3027 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 84690 + 16461 22651 10555 10561 0.05057585810675391 KHKKMYII 8 Unmodified _KHKKMYII_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|6|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|6|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 530.8215942382812 2 530.82043 1059.62631 NaN NaN NaN NaN NaN NaN NaN 74.134 1 77.525 77.025 78.025 3.3911 0 0 0 0.40738 1 18234 18234 0.79363 0 1 16462 11878 10556 10562 20058 20058 0.09887860601497778 KHKKMYII 8 Unmodified _KHKKMYII_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|6|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|6|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 530.8214111328125 2 530.82043 1059.62631 NaN NaN NaN NaN NaN NaN NaN 76.266 1 79.867 79.367 80.367 3.6011 0 0 0 0.40738 1 18004 18004 0.79363 0 1 16463 11878 10556 10562 20059 20059 0.09887860601497778 KHKKPPQL 8 Unmodified _KHKKPPQL_ 0 0 0 L1PB1_dup6834|chr8:129425380-129429594:-|1.7361287744582976|0.0195891756605943|6.47|151.0|27|1|sense L1PB1_dup6834|chr8:129425380-129429594:-|1.7361287744582976|0.0195891756605943|6.47|151.0|27|1|sense L1PB1_dup6834|chr8:129425380-129429594:-|1.7361287744582976|0.0195891756605943|6.47|151.0|27|1|sense MSMS UPN48_class_I_Rep_2 6 488.310546875 2 488.308544 974.602535 NaN NaN NaN NaN NaN NaN NaN 93.697 1 97.467 96.967 97.967 3.77 0 0 0 0.40746 1 22279 22279 0.69038 0 1 16464 15185 10557 10563 20060 20060 0.11421763159330567 KHKLWQAA 8 Unmodified _KHKLWQAA_ 0 0 0 REV__MLT1F_dup3626|chr16:85629860-85630350:-|1.1727170658243744|0.0379229686420178|4.95|151.0|24|3|anti-sense REV__MLT1F_dup3626|chr16:85629860-85630350:-|1.1727170658243744|0.0379229686420178|4.95|151.0|24|3|anti-sense MSMS UPN46_class_I_Rep_3 1 491.2852478027344 2 491.285069 980.555585 NaN NaN NaN NaN NaN NaN NaN 102.25 1 102.25 101.75 102.75 0 0 0 0 0.40746 1 24950 24950 0.69038 0 1 + 16465 31707 10558 10564 20061 20061 0.06452903608169436 KHKPGSTPE 9 Unmodified _KHKPGSTPE_ 0 0 0 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 MSMS UPN48_class_I_Rep_3 7 490.76129150390625 2 490.761623 979.508694 NaN NaN NaN NaN NaN NaN NaN 27.793 1 31.548 31.048 32.048 3.7555 0 0 0 0.39518 1 3693 3693 1.8442 0.36234 1 16466 5053 10559 10565 20062 20062 0.01811999266374187 KHKRKLRKVNQ 11 Unmodified _KHKRKLRKVNQ_ 0 0 0 REV__L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense REV__L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 478.97430419921875 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 46.905 1 46.905 46.405 47.405 0 0 0 0 0.38417 1 9654 9654 0.50596 0 1 + 16467 28169 10560 10566 20063 20063 0.2059369854760007 KHKRKLRKVNQ 11 Unmodified _KHKRKLRKVNQ_ 0 0 0 REV__L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense REV__L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 478.974853515625 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 48.27 1 51.794 51.294 52.294 3.5239 0 0 0 0.38417 1 9630 9630 0.45452 0 1 + 16468 28169 10560 10566 20064 20064 0.2059369854760007 KHKWVPLQ 8 Unmodified _KHKWVPLQ_ 0 0 0 nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MSMS UPN46_class_I_Rep_3 1 518.3086547851562 2 518.308544 1034.60253 0.10707 5.5497E-05 0.16662 8.6359E-05 0.27369 0.00014186 518.308596868196 31.92 0.054913 31.92 31.898 31.953 0 5 3 2 0 0 0 0.82752 1 5401 5401 4.756 4.756 1 2558100 16469 3703 10561 10567 20065 20065 0.08661763159329894 KHKYFFIFN 9 Unmodified _KHKYFFIFN_ 0 0 0 L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|47|1|anti-sense L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|47|1|anti-sense L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|47|1|anti-sense MSMS UPN46_class_I_Rep_3 1 622.3358764648438 2 622.334759 1242.65496 NaN NaN NaN NaN NaN NaN NaN 110.54 1 110.54 110.04 111.04 0 0 0 0 0.4007 1 27225 27225 0.52476 0 1 16470 13289 10562 10568 20066 20066 0.04334301502285598 KHLFLYVI 8 Unmodified _KHLFLYVI_ 0 0 0 REV__L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|170|2|anti-sense REV__L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|170|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 516.3133544921875 2 516.81567 1031.61679 0.37189 0.0001922 0.17545 9.0674E-05 0.54734 0.00028287 516.8157043944448 91.039 0.12894 94.744 94.689 94.818 3.7053 23 16 2 0 0 0 0.72333 1 22748 22748 2.8892 0 1 71606 + 16471 26510 10563 10569 20067 20067 0.10224415587617841 KHLFLYVI 8 Unmodified _KHLFLYVI_ 0 0 0 REV__L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|170|2|anti-sense REV__L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|170|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 516.81567 1031.61679 0.32438 0.00016764 -1.4931 -0.00077163 -1.1687 -0.00060399 516.8160909383823 94.868 0.061417 94.868 94.822 94.884 0 0.061994 -0.0016377 NaN 2.8892 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 52381 + 16472 26510 10563 10569 0.10224415587617841 KHLKVGFF 8 Unmodified _KHLKVGFF_ 0 0 0 REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|79|3|anti-sense REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|79|3|anti-sense MSMS UPN48_class_I_Rep_1 5 488.2928466796875 2 488.292362 974.570172 NaN NaN NaN NaN NaN NaN NaN 86.415 1 90.028 89.528 90.528 3.613 0 0 0 0.40604 1 20706 20706 2.5775 0 1 + 16473 27813 10564 10570 20068 20068 0.0818697575632541 KHLLHLVPWP 10 Unmodified _KHLLHLVPWP_ 0 0 0 L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|17|3|sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|17|3|sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 620.3721313476562 2 620.371675 1238.7288 NaN NaN NaN NaN NaN NaN NaN 88.667 1 92.323 91.823 92.823 3.6563 0 0 0 0.53105 1 22174 22174 0.45834 0.057624 1 16474 9874 10565 10571 20069 20069 0.11898269664584404 KHLLYIKFYKY 11 Unmodified _KHLLYIKFYKY_ 0 0 0 REV__L1MC5_dup497|chr1:151432551-151432995:-|1.001407595561557|0.076277394040818|3.71|151.0|37|3|anti-sense REV__L1MC5_dup497|chr1:151432551-151432995:-|1.001407595561557|0.076277394040818|3.71|151.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 505.96331787109375 3 505.962262 1514.86496 NaN NaN NaN NaN NaN NaN NaN 53.729 1 53.729 53.229 54.229 0 0 0 0 0.38417 1 11581 11581 0.50596 0.051438 1 + 16475 27082 10566 10572 20070 20070 0.12811919384603243 KHLPHDEEEE 10 Unmodified _KHLPHDEEEE_ 0 0 0 REV__L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|65|3|sense REV__L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|65|3|sense MSMS UPN47_class_I_Rep_2 3 631.7871704101562 2 631.786024 1261.55749 NaN NaN NaN NaN NaN NaN NaN 56.364 1 59.665 59.165 60.165 3.3009 0 0 0 0.53105 1 12897 12897 1.4819 0.15237 1 + 16476 24296 10567 10573 20071 20071 -0.06282176955164687 KHLPPCPI 8 Unmodified _KHLPPCPI_ 0 0 0 MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.7574462890625 2 452.757298 903.500044 0.050437 2.2836E-05 -0.45159 -0.00020446 -0.40116 -0.00018163 452.7570114477566 18.392 0.057823 21.979 21.959 22.017 3.5874 10 6 2 0 0 0 0.82752 1 1211 1211 0.79363 0 1 12065 16477 16532 10568 10574 20072 20072 0.04443354096190433 KHLPPCPI 8 Unmodified _KHLPPCPI_ 0 0 0 MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 452.757298 903.500044 0.24798 0.00011227 -0.88801 -0.00040205 -0.64003 -0.00028978 452.7567983623939 17.934 0.074507 21.586 21.553 21.628 3.6518 -0.19662 -0.00012199 NaN 0.79363 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 14736 16478 16532 10568 10574 0.04443354096190433 KHLPPCPI 8 Unmodified _KHLPPCPI_ 0 0 0 MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MSTA_dup6219|chr5:70965654-70966006:+|1.899912604020215|0.4904796635297455|1.95|149.0|17|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 452.757298 903.500044 0.050437 2.2836E-05 -0.45159 -0.00020446 -0.40116 -0.00018163 452.7570114477566 18.392 0.057823 21.979 21.959 22.017 3.5874 0.19662 0.00027318 NaN 0.79363 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 12065 16479 16532 10568 10574 0.04443354096190433 KHLRRPEP 8 Unmodified _KHLRRPEP_ 0 0 0 ENSG00000164185|ENST00000296600|ZNF474 ENSG00000164185|ENST00000296600|ZNF474 ENSG00000164185|ENST00000296600|ZNF474 MSMS UPN48_class_I_Rep_2 6 516.8056030273438 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 94.465 1 98.241 97.741 98.741 3.7761 0 0 0 0.40659 1 22462 22462 1.8442 1.0506 1 16480 4093 10569 10575 20073 20073 0.08431093385456734 KHLSYIQTVI 10 Unmodified _KHLSYIQTVI_ 0 0 0 L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|93|1|anti-sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|93|1|anti-sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|93|1|anti-sense MSMS UPN48_class_I_Rep_3 7 601.3519897460938 2 601.350606 1200.68666 NaN NaN NaN NaN NaN NaN NaN 87.339 1 91.129 90.629 91.629 3.7905 0 0 0 0.53105 1 20722 20722 3.5965 0 1 16481 13347 10570 10576 20074 20074 0.09434249465539324 KHMKAKTA 8 Unmodified _KHMKAKTA_ 0 0 0 REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|24|1|sense REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|24|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 457.26409912109375 2 457.765655 913.516756 0.07294 3.3389E-05 -0.62927 -0.00028806 -0.55633 -0.00025467 457.76546989618816 73.695 0.19582 77.177 77.072 77.268 3.4812 30 21 2 0 0 0 0.72333 1 17384 17384 2.3027 0 1 128830 + 16482 24024 10571 10577 20075 20075 0.05653854982142548 KHMKAKTA 8 Unmodified _KHMKAKTA_ 0 0 0 REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|24|1|sense REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|24|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 457.2640686035156 2 457.765655 913.516756 0.16487 7.5473E-05 -0.73403 -0.00033601 -0.56916 -0.00026054 457.7653215540132 73.357 0.17691 76.935 76.879 77.056 3.5779 31 20 2 0 0 0 0.72333 1 17249 17249 2.3027 0 1 116330 + 16483 24024 10571 10577 20076 20076 0.05653854982142548 KHMKAKTA 8 Unmodified _KHMKAKTA_ 0 0 0 REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|24|1|sense REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|24|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 457.765655 913.516756 0.23004 0.0001053 -0.78475 -0.00035923 -0.55471 -0.00025393 457.7653965252014 73.79 0.20845 77.341 77.209 77.417 3.5505 0.19001 -7.7721E-05 NaN 2.3027 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 135610 + 16484 24024 10571 10577 0.05653854982142548 KHMVKVYK 8 Unmodified _KHMVKVYK_ 0 0 0 REV__nc|ENSG00000197008|P52744|ZNF138 REV__nc|ENSG00000197008|P52744|ZNF138 MSMS UPN48_class_I_Rep_3 7 516.8060302734375 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 93.042 1 96.921 96.421 97.421 3.8782 0 0 0 0.40625 1 22047 22047 2.3027 0 1 + 16485 21062 10572 10578 20077 20077 0.08047287567387684 KHMVRGLELLA 11 Unmodified _KHMVRGLELLA_ 0 0 0 MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.3687133789062 2 633.871182 1265.72781 0.72155 0.00045737 -1.5926 -0.0010095 -0.87109 -0.00055216 633.8701732041625 92.963 0.17316 92.963 92.917 93.091 0 29 16 3 0 0 0 0.50573 1 22530 22530 7.609 3.0801 1 10035000 16486 15895 10573 10579 20078 20078 0.10557687233404067 KHMVRGLELLA 11 Unmodified _KHMVRGLELLA_ 0 0 0 MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 633.87109375 2 633.871182 1265.72781 NaN NaN NaN NaN NaN NaN NaN 89.317 1 92.99 92.49 93.49 3.6738 0 0 0 0.38417 1 22332 22332 5.2969 0 1 16487 15895 10573 10579 20079 20079 0.10557687233404067 KHMVRGLELLA 11 Unmodified _KHMVRGLELLA_ 0 0 0 MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|2|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 633.871182 1265.72781 0.72155 0.00045737 -1.5926 -0.0010095 -0.87109 -0.00055216 633.8701732041625 92.963 0.17316 92.963 92.917 93.091 0 0 0 NaN 7.609 29 16 3 NaN NaN NaN NaN 0 NaN NaN 0 10035000 16488 15895 10573 10579 0.10557687233404067 KHNIPKPKKY 10 Unmodified _KHNIPKPKKY_ 0 0 0 L1MB2_dup2984|chr6:88937358-88939769:-|2.0416634548275834|0.0227605852995227|6.49|151.0|51|2|sense L1MB2_dup2984|chr6:88937358-88939769:-|2.0416634548275834|0.0227605852995227|6.49|151.0|51|2|sense L1MB2_dup2984|chr6:88937358-88939769:-|2.0416634548275834|0.0227605852995227|6.49|151.0|51|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 626.3789672851562 2 626.879865 1251.74518 0.51237 0.00032119 1.7212 0.001079 2.2336 0.0014002 626.8808504394832 99.312 0.041992 102.75 102.72 102.76 3.4328 6 5 2 0 0 0 0.84575 1 24564 24564 1.4819 0.28856 1 48985 16489 10231 10574 10580 20080 20080 0.1293735083067986 KHNIPKPKKY 10 Unmodified _KHNIPKPKKY_ 0 0 0 L1MB2_dup2984|chr6:88937358-88939769:-|2.0416634548275834|0.0227605852995227|6.49|151.0|51|2|sense L1MB2_dup2984|chr6:88937358-88939769:-|2.0416634548275834|0.0227605852995227|6.49|151.0|51|2|sense L1MB2_dup2984|chr6:88937358-88939769:-|2.0416634548275834|0.0227605852995227|6.49|151.0|51|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 626.879865 1251.74518 0.49484 0.00031021 1.9585 0.0012278 2.4534 0.001538 626.880867531937 98.578 0.027924 102.35 102.33 102.35 3.7707 -0.19823 2.58E-05 NaN 1.4819 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 344930 16490 10231 10574 10580 0.1293735083067986 KHNRRMKRL 9 Unmodified _KHNRRMKRL_ 0 0 0 nc|ENSG00000143740|Q5SQN1-4|SNAP47;ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47 nc|ENSG00000143740|Q5SQN1-4|SNAP47 nc|ENSG00000143740|Q5SQN1-4|SNAP47 MULTI-SECPEP UPN48_class_I_Rep_2 6 619.3716430664062 2 619.872382 1237.73021 0.49259 0.00030535 0.99637 0.00061762 1.489 0.00092296 619.8729627635405 92.761 0.13535 96.531 96.496 96.632 3.77 27 18 2 0 0 0 0.12532 1 22088 22088 0.52476 0 1 134210 16491 3320 10575 10581 20081 20081 0.12085580481721081 KHPGLKLEKPY 11 Unmodified _KHPGLKLEKPY_ 0 0 0 REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|4|1|sense REV__L1MB8_dup265|chr1:44492066-44492844:+|10.548997897526112|0.0019403156945592|12.41|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 437.2573547363281 3 437.259079 1308.75541 NaN NaN NaN NaN NaN NaN NaN 101.93 1 105.54 105.04 106.04 3.612 0 0 0 0.38417 1 24592 24592 1.1098 0.48293 1 + 16492 26398 10576 10582 20082 20082 0.11337913765282792 KHPGWPRFCL 10 Unmodified _KHPGWPRFCL_ 0 0 0 ENST00000474436.1_1_9:35089091-35089349:-|nuORF ENST00000474436.1_1_9:35089091-35089349:-|nuORF ENST00000474436.1_1_9:35089091-35089349:-|nuORF MSMS UPN48_class_I_Rep_3 7 620.824462890625 2 620.824035 1239.63352 NaN NaN NaN NaN NaN NaN NaN 48.744 1 52.374 51.874 52.874 3.6291 0 0 0 0.53105 1 9712 9712 1.4819 0.41044 1 16493 6948 10577 10583 20083 20083 0.02328593201923468 KHPHLCLV 8 Unmodified _KHPHLCLV_ 0 0 0 nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 nc|ENSG00000197150|Q9NUT2-3|ABCB8 nc|ENSG00000197150|Q9NUT2-3|ABCB8 MULTI-SECPEP UPN47_class_I_Rep_3 4 473.284423828125 2 473.768197 945.521842 0.034084 1.6148E-05 -0.44517 -0.00021091 -0.41109 -0.00019476 473.7681659938828 76.738 0.077141 80.007 79.985 80.062 3.269 11 7 2 0 0 0 0.72333 1 19104 19104 2.3027 0 1 18736 16494 5351 10578 10584 20084 20084 0.046901588447667564 KHPKHLFL 8 Unmodified _KHPKHLFL_ 0 0 0 REV__Tigger13a_dup1196|chr6:37909892-37910119:-|1.018673371019155|0.0007679304636823|10.37|151.0|12|1|anti-sense REV__Tigger13a_dup1196|chr6:37909892-37910119:-|1.018673371019155|0.0007679304636823|10.37|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 510.3104248046875 2 510.311087 1018.60762 NaN NaN NaN NaN NaN NaN NaN 69.864 1 73.232 72.732 73.732 3.3678 0 0 0 0.39819 1 16951 16951 8.5933 1.8701 1 + 16495 32582 10579 10585 20085 20085 0.09906067021927356 KHPYVRLEP 9 Unmodified _KHPYVRLEP_ 0 0 0 REV__ENSG00000176566|ENST00000319675|DCAF4L2 REV__ENSG00000176566|ENST00000319675|DCAF4L2 MSMS UPN48_class_I_Rep_3 7 569.8211059570312 2 569.822015 1137.62948 NaN NaN NaN NaN NaN NaN NaN 66.987 1 70.495 69.995 70.995 3.5077 0 0 0 0.39518 1 15258 15258 1.8442 0 1 + 16496 20592 10580 10586 20086 20086 0.06616826979825419 KHQNKWKKKKK 11 Unmodified _KHQNKWKKKKK_ 0 0 0 AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense MSMS UPN47_class_I_Rep_1 2 494.3114013671875 3 494.312288 1479.91504 NaN NaN NaN NaN NaN NaN NaN 69.797 1 73.165 72.665 73.665 3.3678 0 0 0 0.38417 1 16931 16931 0.45452 0.35968 1 16497 151 10581 10587 20087 20087 0.19427466833076323 KHQNKWKKKKK 11 Unmodified _KHQNKWKKKKK_ 0 0 0 AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 494.31146240234375 3 494.312288 1479.91504 NaN NaN NaN NaN NaN NaN NaN 69.741 1 72.946 72.446 73.446 3.2044 0 0 0 0.38417 1 17022 17022 0.45452 0.35968 1 16498 151 10581 10587 20088 20088 0.19427466833076323 KHQNKWKKKKK 11 Unmodified _KHQNKWKKKKK_ 0 0 0 AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense MSMS UPN48_class_I_Rep_2 6 494.3113098144531 3 494.312288 1479.91504 NaN NaN NaN NaN NaN NaN NaN 63.566 1 67.04 66.54 67.54 3.4743 0 0 0 0.38417 1 14302 14302 0.45452 0.35968 1 16499 151 10581 10587 20089 20089 0.19427466833076323 KHQNQFHIL 9 Unmodified _KHQNQFHIL_ 0 0 0 MamGypsy2-I_dup1936|chr13:113225263-113225477:+|1.5853455765865188|0.1605495586866732|3.3|151.0|11|1|anti-sense MamGypsy2-I_dup1936|chr13:113225263-113225477:+|1.5853455765865188|0.1605495586866732|3.3|151.0|11|1|anti-sense MamGypsy2-I_dup1936|chr13:113225263-113225477:+|1.5853455765865188|0.1605495586866732|3.3|151.0|11|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 582.817626953125 2 582.817264 1163.61998 0.45529 0.00026535 -0.87006 -0.00050709 -0.41477 -0.00024174 582.8166953838535 68.954 0.5123 72.409 72.329 72.841 3.4548 71 36 2 0 0 0 0.46869 1 16088 16088 3.9444 3.9444 1 531880 16500 15738 10582 10588 20090 20090 0.0447105869434381 KHQPVKRRY 9 Unmodified _KHQPVKRRY_ 0 0 0 REV__L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|65|3|sense REV__L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|65|3|sense MSMS UPN46_class_I_Rep_3 1 606.3603515625 2 606.359631 1210.70471 NaN NaN NaN NaN NaN NaN NaN 33.788 1 33.788 33.288 34.288 0 0 0 0 0.40038 1 5953 5953 0.6015 0 1 + 16501 25422 10583 10589 20091 20091 0.10778429230936126 KHQTERKFM 9 Unmodified _KHQTERKFM_ 0 0 0 REV__THE1C-int_dup623|chr5:88855880-88857517:+|1.9402736907476796|0.0843475941996828|4.52|150.0|22|2|sense REV__THE1C-int_dup623|chr5:88855880-88857517:+|1.9402736907476796|0.0843475941996828|4.52|150.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 602.8157348632812 2 602.816407 1203.61826 NaN NaN NaN NaN NaN NaN NaN 73.374 1 76.855 76.355 77.355 3.4812 0 0 0 0.39518 1 17285 17285 1.8442 0.19162 1 + 16502 32292 10584 10590 20092 20092 0.024596816140501687 KHQVLKKFEEL 11 Unmodified _KHQVLKKFEEL_ 0 0 0 REV__nc|ENSG00000122136|Q9NY56-3|OBP2A REV__nc|ENSG00000122136|Q9NY56-3|OBP2A MULTI-SECPEP UPN48_class_I_Rep_2 6 467.10205078125 3 466.941638 1397.80309 0.1975 9.2222E-05 0.84263 0.00039346 1.0401 0.00048568 466.94221431866777 90.855 0.11956 94.61 94.512 94.632 3.7554 20 16 2 0 0 0 22.551 1 21616 21616 0.50596 0 1 120140 + 16503 18741 10585 10591 20093 20093 0.12009567965469614 KHQVLKKFEEL 11 Unmodified _KHQVLKKFEEL_ 0 0 0 REV__nc|ENSG00000122136|Q9NY56-3|OBP2A REV__nc|ENSG00000122136|Q9NY56-3|OBP2A MULTI-MATCH UPN46_class_I_Rep_3 1 3 466.941638 1397.80309 0.23109 0.00010791 1.547 0.00072234 1.7781 0.00083025 467.27667798067824 94.664 0.071274 94.664 94.626 94.697 0 0.02705 0.00071943 NaN 0.50596 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 84404 + 16504 18741 10585 10591 0.12009567965469614 KHQYRYARK 9 Unmodified _KHQYRYARK_ 0 0 0 REV__L1MA4A_dup959|chr2:240493337-240494821:-|4.81086575266231|0.0804520847892125|5.9|151.0|10|1|sense REV__L1MA4A_dup959|chr2:240493337-240494821:-|4.81086575266231|0.0804520847892125|5.9|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 625.3528442382812 2 625.349263 1248.68397 NaN NaN NaN NaN NaN NaN NaN 69.288 1 69.288 68.788 69.788 0 0 0 0 0.39518 1 15870 15870 1.8442 0.19162 1 + 16505 25352 10586 10592 20094 20094 0.06957838851235465 KHRARKAAR 9 Unmodified _KHRARKAAR_ 0 0 0 REV__ENST00000513898.5_1_4:2696860-2717089:+|nuORF REV__ENST00000513898.5_1_4:2696860-2717089:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 546.8402099609375 2 547.344315 1092.67408 0.48798 0.00026709 -3.4649 -0.0018965 -2.9769 -0.0016294 547.3425541562254 91.865 0.027283 95.269 95.257 95.284 3.4034 5 3 2 0 0 0 0.12034 1 22956 22956 7.2892 0.56607 1 138920 + 16506 18827 10587 10593 20095 20095 0.13144695636538017 KHRCGFFLW 9 Unmodified _KHRCGFFLW_ 0 0 0 REV__ENSG00000124275|ENST00000440940|MTRR REV__ENSG00000124275|ENST00000440940|MTRR MSMS UPN48_class_I_Rep_3 7 597.3050537109375 2 597.305478 1192.5964 NaN NaN NaN NaN NaN NaN NaN 45.416 1 49.053 48.553 49.553 3.6369 0 0 0 0.39428 1 8693 8693 2.0598 0.21551 1 + 16507 18803 10588 10594 20096 20096 0.007809216561554422 KHREEESIKS 10 Unmodified _KHREEESIKS_ 0 0 0 REV__ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|17|2|sense REV__ERVL-B4-int_dup2897|chr12:10960321-10961256:+|1.0311411952700018|0.0588848880724957|4.13|150.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 621.8256225585938 2 621.825483 1241.63641 NaN NaN NaN NaN NaN NaN NaN 32.158 1 35.859 35.359 36.359 3.7015 0 0 0 0.53105 1 4853 4853 1.4819 0 1 + 16508 23259 10589 10595 20097 20097 0.02526095069765688 KHRFIFHL 8 Unmodified _KHRFIFHL_ 0 0 0 REV__nc|ENSG00000127022|P27824-3|CANX REV__nc|ENSG00000127022|P27824-3|CANX MULTI-SECPEP UPN47_class_I_Rep_3 4 549.7825927734375 2 549.321986 1096.62942 0.481 0.00026422 1.6303 0.00089556 2.1113 0.0011598 549.3228044084244 50.144 0.31561 53.37 53.168 53.484 3.2262 25 18 2 0 0 0 0.72333 1 11054 11054 13.508 4.9146 1 101400 + 16509 18869 10590 10596 20098 20098 0.08496871770512371 KHRGLFLC 8 Unmodified _KHRGLFLC_ 0 0 0 REV__L1MB7_dup12295|chrX:74228044-74228387:+|1.6108752910558763|0.022479266148874|6.16|150.0|8|2|sense REV__L1MB7_dup12295|chrX:74228044-74228387:+|1.6108752910558763|0.022479266148874|6.16|150.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 487.27557373046875 2 487.273647 972.532741 NaN NaN NaN NaN NaN NaN NaN 73.945 1 73.945 73.445 74.445 0 0 0 0 0.40738 1 17150 17150 0.79363 0 1 + 16510 26131 10591 10597 20099 20099 0.045375612190582615 KHRIIGVCMC 10 Unmodified _KHRIIGVCMC_ 0 0 0 L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|28|2|sense L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|28|2|sense L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|28|2|sense MSMS UPN47_class_I_Rep_1 2 580.2959594726562 2 580.298481 1158.58241 NaN NaN NaN NaN NaN NaN NaN 66.671 1 70.029 69.529 70.529 3.3576 0 0 0 0.53105 1 15985 15985 1.6526 0.96225 1 16511 11591 10592 10598 20100 20100 0.009461848412001927 KHRKLLEEY 9 Unmodified _KHRKLLEEY_ 0 0 0 REV__nc|ENSG00000162267|Q06033-2|ITIH3 REV__nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-SECPEP UPN46_class_I_Rep_3 1 406.46917724609375 3 405.899662 1214.67716 -0.33157 -0.00013458 0.158 6.4131E-05 -0.17357 -7.0453E-05 406.2328508871086 23.927 0.052704 23.927 23.878 23.931 0 6 5 2 0 0 0 0.12545 1 3072 3072 0.26902 0 1 11300 + + 16512 17485 10593 10599 20101 20101 0.07840481180051029 KHRLIMVILI 10 Unmodified _KHRLIMVILI_ 0 0 0 REV__ENSG00000197410|ENST00000357232|DCHS2 REV__ENSG00000197410|ENST00000357232|DCHS2 MSMS UPN48_class_I_Rep_1 5 618.40673828125 2 618.404661 1234.79477 NaN NaN NaN NaN NaN NaN NaN 94.212 1 97.833 97.333 98.333 3.6208 0 0 0 0.53105 1 22666 22666 0.45834 0 1 + 16513 21081 10594 10600 20102 20102 0.18676342515163924 KHRLLSSDP 9 Unmodified _KHRLLSSDP_ 0 0 0 ENST00000263863.8_1_2:85924752-85925953:+|nuORF ENST00000263863.8_1_2:85924752-85925953:+|nuORF ENST00000263863.8_1_2:85924752-85925953:+|nuORF MSMS UPN47_class_I_Rep_1 2 527.2759399414062 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 26.773 1 30.539 30.039 31.039 3.7662 0 0 0 0.39598 1 3880 3880 1.6526 0 1 16514 5983 10595 10601 20103 20103 0.05371663566097595 KHRLVAGP 8 Unmodified _KHRLVAGP_ 0 0 0 REV__ENST00000376510.7_1_10:23393112-23399193:+|nuORF REV__ENST00000376510.7_1_10:23393112-23399193:+|nuORF MSMS UPN48_class_I_Rep_3 7 439.27166748046875 2 439.271961 876.52937 NaN NaN NaN NaN NaN NaN NaN 38.175 1 41.834 41.334 42.334 3.6595 0 0 0 0.40625 1 6529 6529 2.3027 0 1 + 16515 22017 10596 10602 20104 20104 0.08616634436702952 KHRLVLILQP 10 Unmodified _KHRLVLILQP_ 0 0 0 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 nc|ENSG00000162413|Q9UJP4-2|KLHL21 MULTI-MSMS UPN47_class_I_Rep_3 4 406.2670593261719 3 406.267797 1215.78156 -1.2445 -0.00050561 -0.65731 -0.00026704 -1.9018 -0.00077265 406.2675517300857 33.832 0.36224 37.107 36.842 37.205 3.2748 32 24 2 0 0 0 0.56454 1 6019 6019 0.62683 0.063655 1 105890 16516 16731 10597 10603 20105 20105 0.18230227727417514 KHRNKNRR 8 Unmodified _KHRNKNRR_ 0 0 0 REV__ENST00000409202.7_1_2:68962069-68962258:+|nuORF REV__ENST00000409202.7_1_2:68962069-68962258:+|nuORF MSMS UPN47_class_I_Rep_2 3 554.8330688476562 2 554.831572 1107.64859 NaN NaN NaN NaN NaN NaN NaN 78.514 1 81.856 81.356 82.356 3.3428 0 0 0 0.40746 1 19505 19505 0.69038 0 1 + 16517 22176 10598 10604 20106 20106 0.09907221114121967 KHRNQLNRI 9 Unmodified _KHRNQLNRI_ 0 0 0 L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|6|1|sense L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|6|1|sense L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 589.8450927734375 2 589.846887 1177.67922 NaN NaN NaN NaN NaN NaN NaN 85.014 1 88.376 87.876 88.876 3.3615 0 0 0 0.38478 1 21325 21325 4.3292 1.0479 1 16518 12024 10599 10605 20107 20107 0.09748954708516067 KHRQQYEE 8 Unmodified _KHRQQYEE_ 0 0 0 nc|ENSG00000132405|Q9P2M4-2|TBC1D14;ENSG00000132405|ENST00000409757|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MSMS UPN47_class_I_Rep_3 4 559.2716064453125 2 559.272887 1116.53122 NaN NaN NaN NaN NaN NaN NaN 18.696 1 22.051 21.551 22.551 3.3545 0 0 0 0.40625 1 1606 1606 2.3027 0.24298 1 16519 2752 10600 10606 20108 20108 -0.0223840133601243 KHRRATVRP 9 Unmodified _KHRRATVRP_ 0 0 0 REV__ENSG00000079482|ENST00000355520|OPHN1 REV__ENSG00000079482|ENST00000355520|OPHN1 MSMS UPN47_class_I_Rep_3 4 560.843505859375 2 560.844148 1119.67374 NaN NaN NaN NaN NaN NaN NaN 107.28 1 110.82 110.32 111.32 3.5382 0 0 0 0.38784 1 26190 26190 3.5965 0.31518 1 + 16520 17896 10601 10607 20109 20109 0.11869275916706101 KHRRGRQR 8 Unmodified _KHRRGRQR_ 0 0 0 REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|18|1|sense REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 547.3445434570312 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 93.028 1 96.434 95.934 96.934 3.4052 0 0 0 0.40625 1 23209 23209 2.3027 0.65011 1 + 16521 32657 10602 10608 20110 20110 0.10630640833983307 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS UPN48_class_I_Rep_1 5 479.30914306640625 3 478.975788 1433.90553 0.10256 4.9125E-05 -2.2263 -0.0010663 -2.1237 -0.0010172 479.3089127280139 47.837 0.20959 51.359 51.28 51.489 3.5219 19 13 2 0 0 0 0.68478 1 9510 9510 0.094841 0 1 124720 16522 5327 10603 10609 20111 20111 0.20593698547577333 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS UPN48_class_I_Rep_2 6 478.97454833984375 3 478.975788 1433.90553 0.31903 0.00015281 -2.1177 -0.0010143 -1.7986 -0.00086151 478.9747727163162 58.788 0.078907 62.287 62.218 62.296 3.4987 7 4 2 0 0 0 0.68478 1 12835 12835 0.094841 0 1 111730 16523 5327 10603 10609 20112 20112 0.20593698547577333 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MSMS UPN48_class_I_Rep_2 6 478.97491455078125 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 49.888 1 53.582 53.082 54.082 3.6946 0 0 0 0.38417 1 10128 10128 0.094841 0 1 16524 5327 10603 10609 20113 20113 0.20593698547577333 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MATCH UPN48_class_I_Rep_2 6 3 478.975788 1433.90553 0.13106 6.2776E-05 -2.2425 -0.0010741 -2.1114 -0.0010113 478.9746096374764 47.613 0.16309 51.349 51.269 51.433 3.7361 -0.012662 -7.064E-05 NaN 0.094841 18 11 3 NaN NaN NaN NaN 0 NaN NaN 0 123270 16525 5327 10603 10609 0.20593698547577333 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MATCH UPN48_class_I_Rep_3 7 3 478.975788 1433.90553 0.18022 8.6321E-05 -2.9222 -0.0013997 -2.742 -0.0013133 478.9741817923617 59.107 0.08218 62.63 62.567 62.649 3.5231 0.17181 -0.00081533 NaN 0.094841 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 83745 16526 5327 10603 10609 0.20593698547577333 KHRRPRFV 8 Unmodified _KHRRPRFV_ 0 0 0 ENSG00000173141|ENST00000309594|MRPL57 ENSG00000173141|ENST00000309594|MRPL57 ENSG00000173141|ENST00000309594|MRPL57 MSMS UPN47_class_I_Rep_3 4 548.3358764648438 2 548.335959 1094.65736 NaN NaN NaN NaN NaN NaN NaN 71.871 1 75.09 74.59 75.59 3.2188 0 0 0 0.40746 1 17661 17661 0.69038 0 1 16527 4612 10604 10610 20114 20114 0.11382194750603958 KHRRQNIQV 9 Unmodified _KHRRQNIQV_ 0 0 0 REV__L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|132|2|sense REV__L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|132|2|sense MSMS UPN47_class_I_Rep_3 4 589.8447265625 2 589.846887 1177.67922 NaN NaN NaN NaN NaN NaN NaN 82.53 1 85.867 85.367 86.367 3.337 0 0 0 0.39518 1 20685 20685 1.8442 0 1 + 16528 29158 10605 10611 20115 20115 0.09748954708493329 KHRRRRRRS 9 Unmodified _KHRRRRRRS_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000484699.1_1_1:155239218-155239476:-|nuORF;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-MSMS UPN48_class_I_Rep_3 7 436.6081237792969 3 436.608321 1306.80313 0.12527 5.4696E-05 -1.4499 -0.00063302 -1.3246 -0.00057833 436.6079532848651 60.218 0.27595 63.735 63.598 63.874 3.5169 38 24 2 0 0 0 0.49768 1 13194 13194 0.86438 0.16671 1 64295 16529 4760 10606 10612 20116 20116 0.1620047031933609 KHRRRRRRS 9 Unmodified _KHRRRRRRS_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000484699.1_1_1:155239218-155239476:-|nuORF;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 436.608321 1306.80313 0.12527 5.4696E-05 -1.4499 -0.00063302 -1.3246 -0.00057833 436.6079532848651 60.218 0.27595 63.735 63.598 63.874 3.5169 0.042871 0.00020987 NaN 0.86438 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 64295 16530 4760 10606 10612 0.1620047031933609 KHSHPFVE 8 Unmodified _KHSHPFVE_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|203|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|203|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.7511901855469 2 490.751059 979.487565 -0.31537 -0.00015477 0.54236 0.00026616 0.22699 0.0001114 490.75131684876965 25.276 0.15027 29.026 28.92 29.07 3.7495 13 12 2 0 0 0 0.82752 1 3426 3426 2.5775 0 1 40730 + 16531 23533 10607 10613 20117 20117 -0.0029996604247344294 KHSHPFVE 8 Unmodified _KHSHPFVE_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|203|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|203|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.7519836425781 2 490.751059 979.487565 -0.10458 -5.1324E-05 -0.38808 -0.00019045 -0.49266 -0.00024177 490.7508619381771 24.943 0.80376 28.426 28.119 28.922 3.483 90 70 2 0 0 0 0.82752 1 3510 3510 2.5775 0 1 66676 + 16532 23533 10607 10613 20118 20118 -0.0029996604247344294 KHSKKNSKPK 10 Unmodified _KHSKKNSKPK_ 0 0 0 L1MB4_dup7392|chr16:47339408-47340990:+|1.0917380734329667|0.0550171441652392|4.31|151.0|41|3|sense L1MB4_dup7392|chr16:47339408-47340990:+|1.0917380734329667|0.0550171441652392|4.31|151.0|41|3|sense L1MB4_dup7392|chr16:47339408-47340990:+|1.0917380734329667|0.0550171441652392|4.31|151.0|41|3|sense MSMS UPN46_class_I_Rep_3 1 591.3587646484375 2 591.359296 1180.70404 NaN NaN NaN NaN NaN NaN NaN 108.28 1 108.28 107.78 108.78 0 0 0 0 0.53105 1 26473 26473 12.241 4.9514 1 16533 10571 10608 10614 20119 20119 0.12091589791225488 KHSLPINDV 9 Unmodified _KHSLPINDV_ 0 0 0 REV__L1MB8_dup15814|chr20:38071310-38072682:-|3.865095307413728|0.1565017481843818|4.63|151.0|61|1|anti-sense REV__L1MB8_dup15814|chr20:38071310-38072682:-|3.865095307413728|0.1565017481843818|4.63|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_1 2 511.72259521484375 2 511.785099 1021.55564 NaN NaN NaN NaN NaN NaN NaN 80.544 1 84.032 83.532 84.532 3.4874 0 0 0 0.39036 1 20066 20066 2.9952 0.69251 1 + 16534 26386 10609 10615 20120 20120 0.04572858817527958 KHSNCCCYF 9 Unmodified _KHSNCCCYF_ 0 0 0 REV__MLT1D_dup2268|chr2:134129020-134129484:-|1.105951891051778|0.0238507338573329|5.54|151.0|21|1|anti-sense REV__MLT1D_dup2268|chr2:134129020-134129484:-|1.105951891051778|0.0238507338573329|5.54|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7062377929688 2 552.706622 1103.39869 NaN NaN NaN NaN NaN NaN NaN 114.65 1 118.16 117.66 118.66 3.5039 0 0 0 0.38478 1 27923 27923 4.3292 0 1 + 16535 31678 10610 10616 20121 20121 -0.1488720866032054 KHTAHRLP 8 Unmodified _KHTAHRLP_ 0 0 0 L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 480.2798156738281 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 19.458 1 23.07 22.57 23.57 3.6118 0 0 0 0.40746 1 1794 1794 0.69038 0 1 16536 12878 10611 10617 20122 20122 0.06515135322649712 KHTAHRLP 8 Unmodified _KHTAHRLP_ 0 0 0 L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 480.28009033203125 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 20.679 1 24.327 23.827 24.827 3.648 0 0 0 0.40746 1 1821 1821 0.69038 0 1 16537 12878 10611 10617 20123 20123 0.06515135322649712 KHTAHRLP 8 Unmodified _KHTAHRLP_ 0 0 0 L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense L1ME4b_dup10115|chr8:42030957-42031256:+|1.4177126986608686|0.0105450991793507|7.07|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 480.2796325683594 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 19.477 1 23.099 22.599 23.599 3.6215 0 0 0 0.40746 1 1478 1478 0.69038 0 1 16538 12878 10611 10617 20124 20124 0.06515135322649712 KHTEDTYNHI 10 Unmodified _KHTEDTYNHI_ 0 0 0 REV__L1M5_dup30246|chr9:131412289-131412571:-|1.1965547722224927|0.013336305836713|6.49|151.0|9|3|sense REV__L1M5_dup30246|chr9:131412289-131412571:-|1.1965547722224927|0.013336305836713|6.49|151.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 629.2933959960938 2 629.296559 1256.57856 NaN NaN NaN NaN NaN NaN NaN 46.697 1 50.397 49.897 50.897 3.6999 0 0 0 0.53105 1 9929 9929 1.3295 0.13619 1 + 16539 24650 10612 10618 20125 20125 -0.03946166855666888 KHTKPHIK 8 Unmodified _KHTKPHIK_ 0 0 0 REV__L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|18|2|sense REV__L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 494.8053894042969 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 33.383 1 37.063 36.563 37.563 3.6797 0 0 0 0.40331 1 5183 5183 6.2058 1.4498 1 + 16540 25793 10613 10619 20126 20126 0.10348879016544288 KHTKTYFYS 9 Unmodified _KHTKTYFYS_ 0 0 0 L1M1_dup8220|chr14:60955683-60957261:-|1.293725037105912|0.0730629527033589|4.15|150.0|104|3|anti-sense L1M1_dup8220|chr14:60955683-60957261:-|1.293725037105912|0.0730629527033589|4.15|150.0|104|3|anti-sense L1M1_dup8220|chr14:60955683-60957261:-|1.293725037105912|0.0730629527033589|4.15|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 587.798583984375 2 587.798206 1173.58186 NaN NaN NaN NaN NaN NaN NaN 45.39 1 48.906 48.406 49.406 3.5162 0 0 0 0.39598 1 8747 8747 1.6526 0 1 16541 8629 10614 10620 20127 20127 0.0020112798899845075 KHTYKFKA 8 Unmodified _KHTYKFKA_ 0 0 0 REV__Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|9|3|sense REV__Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|9|3|sense MSMS UPN46_class_I_Rep_3 1 511.4728088378906 2 511.792727 1021.5709 NaN NaN NaN NaN NaN NaN NaN 101.75 1 101.75 101.25 102.25 0 0 0 0 0.40625 1 24825 24825 2.3027 1.6124 1 + 16542 17291 10615 10621 20128 20128 0.06097770405369829 KHVHACIYL 9 Unmodified _KHVHACIYL_ 0 0 0 HERVL-int_dup988|chr6:122454715-122455155:+|1.3630694893677595|0.3792472481399755|1.85|151.0|7|2|sense HERVL-int_dup988|chr6:122454715-122455155:+|1.3630694893677595|0.3792472481399755|1.85|151.0|7|2|sense HERVL-int_dup988|chr6:122454715-122455155:+|1.3630694893677595|0.3792472481399755|1.85|151.0|7|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 542.390380859375 2 542.292037 1082.56952 0.4774 0.00025889 -1.3803 -0.00074853 -0.90292 -0.00048965 542.2912877656476 79.428 0.33372 83.062 82.866 83.2 3.6331 40 35 2 0 0 0 0.12235 1 18829 18829 4.756 1.1595 1 77790 16543 8384 10616 10622 20129 20129 0.03153813044946219 KHVHPLQY 8 Unmodified _KHVHPLQY_ 0 0 0 ENST00000335508.10_1_2:198260921-198260966:-|nuORF ENST00000335508.10_1_2:198260921-198260966:-|nuORF ENST00000335508.10_1_2:198260921-198260966:-|nuORF MSMS UPN48_class_I_Rep_2 6 511.2839050292969 2 511.282526 1020.5505 NaN NaN NaN NaN NaN NaN NaN 33.229 1 36.889 36.389 37.389 3.6607 0 0 0 0.40404 1 5222 5222 5.2307 2.6532 1 16544 6202 10617 10623 20130 20130 0.041045997455512406 KHVPKPVH 8 Unmodified _KHVPKPVH_ 0 0 0 L1MB7_dup1905|chr2:24350347-24351030:+|1.0893688792389864|0.0099651205368374|6.77|151.0|4|1|sense REV__L1MB7_dup1905|chr2:24350347-24351030:+|1.0893688792389864|0.0099651205368374|6.77|151.0|4|1|sense REV__L1MB7_dup1905|chr2:24350347-24351030:+|1.0893688792389864|0.0099651205368374|6.77|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 471.28680419921875 2 471.287611 940.56067 NaN NaN NaN NaN NaN NaN NaN 22.389 1 25.739 25.239 26.239 3.3496 0 0 0 0.40746 1 2671 2671 0.69038 0 1 16545 10768 10618 10624 20131 20131 0.08801207470799 KHVPSPDA 8 Unmodified _KHVPSPDA_ 0 0 0 REV__nc|ENSG00000148541|Q8NE31-2|FAM13C REV__nc|ENSG00000148541|Q8NE31-2|FAM13C MSMS UPN47_class_I_Rep_2 3 425.72314453125 2 425.72451 849.434466 NaN NaN NaN NaN NaN NaN NaN 79.566 1 82.921 82.421 83.421 3.3554 0 0 0 0.4044 1 19812 19812 4.756 1.8668 1 + 16546 19594 10619 10625 20132 20132 0.003726561748521817 KHVRGPAL 8 Unmodified _KHVRGPAL_ 0 0 0 ENST00000608763.1_1_13:114524697-114525165:-|nuORF ENST00000608763.1_1_13:114524697-114525165:-|nuORF ENST00000608763.1_1_13:114524697-114525165:-|nuORF MSMS UPN48_class_I_Rep_3 7 439.2711486816406 2 439.271961 876.52937 NaN NaN NaN NaN NaN NaN NaN 38.339 1 41.998 41.498 42.498 3.6595 0 0 0 0.40404 1 6577 6577 5.2307 0 1 16547 7698 10620 10626 20133 20133 0.08616634436714321 KHVVFVFL 8 Unmodified _KHVVFVFL_ 0 0 0 L1PA11_dup415|chr2:99646969-99647681:+|1.4025035053440873|0.0538719206778459|4.7|150.0|28|1|anti-sense L1PA11_dup415|chr2:99646969-99647681:+|1.4025035053440873|0.0538719206778459|4.7|150.0|28|1|anti-sense L1PA11_dup415|chr2:99646969-99647681:+|1.4025035053440873|0.0538719206778459|4.7|150.0|28|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 494.3010559082031 2 494.802563 987.590573 0.26777 0.00013249 0.20929 0.00010356 0.47706 0.00023605 494.80264394967134 87.618 0.024323 91.409 91.393 91.417 3.7905 4 2 2 0 0 0 0.72333 1 20787 20787 0.79363 0 1 135140 16548 13687 10621 10627 20134 20134 0.09628146416127947 KHWDYRHQ 8 Unmodified _KHWDYRHQ_ 0 0 0 AluJr_dup67151|chr16:22415490-22415773:+|2.0798772612990284|0.1345170951847967|3.95|151.0|20|3|anti-sense AluJr_dup67151|chr16:22415490-22415773:+|2.0798772612990284|0.1345170951847967|3.95|151.0|20|3|anti-sense AluJr_dup67151|chr16:22415490-22415773:+|2.0798772612990284|0.1345170951847967|3.95|151.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.28369140625 2 585.283589 1168.55262 NaN NaN NaN NaN NaN NaN NaN 17.098 1 17.098 16.598 17.598 0 0 0 0 0.40753 1 1292 1292 0.6015 0 1 16549 172 10622 10628 20135 20135 -0.024909715166359092 KHWPPDKQY 9 Unmodified _KHWPPDKQY_ 0 0 0 MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|29|3|sense MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|29|3|sense MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 599.8034057617188 2 599.803823 1197.59309 NaN NaN NaN NaN NaN NaN NaN 68.027 1 68.027 67.527 68.527 0 0 0 0 0.37692 1 15511 15511 6.2058 0 1 16550 16014 10623 10629 20136 20136 0.0021995008312387654 KHWPYRPM 8 Unmodified _KHWPYRPM_ 0 0 0 REV__L1MDa_dup4907|chr11:77003144-77004089:-|1.2884723371868338|0.0427173462049698|4.91|151.0|13|2|sense REV__L1MDa_dup4907|chr11:77003144-77004089:-|1.2884723371868338|0.0427173462049698|4.91|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 557.7840576171875 2 557.784379 1113.5542 NaN NaN NaN NaN NaN NaN NaN 28.248 1 32.014 31.514 32.514 3.7662 0 0 0 0.40746 1 4323 4323 0.69038 0 1 + 16551 27531 10624 10630 20137 20137 0.001969462477518391 KHWSVIEVIK 10 Unmodified _KHWSVIEVIK_ 0 0 0 REV__HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|212|2|anti-sense REV__HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|212|2|anti-sense MSMS UPN47_class_I_Rep_3 4 619.8692016601562 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 86 1 89.371 88.871 89.871 3.3716 0 0 0 0.53105 1 21554 21554 1.3295 0.80477 1 + 16552 23802 10625 10631 20138 20138 0.10894242219501393 KHWVLYDIS 9 Unmodified _KHWVLYDIS_ 0 0 0 REV__MER77B_dup802|chr11:73092809-73093462:+|2.471559172024268|0.0071490536764662|8.43|151.0|30|1|anti-sense REV__MER77B_dup802|chr11:73092809-73093462:+|2.471559172024268|0.0071490536764662|8.43|151.0|30|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.80859375 2 580.808574 1159.60259 0.40914 0.00023763 0.10627 6.1722E-05 0.51541 0.00029936 580.8085615316594 45.428 1.505 49.065 48.486 49.991 3.6369 252 103 3 0 0 0 0.48846 1 8912 8912 1.8442 1.8442 1 870350 + 16553 31564 10626 10632 20139 20139 0.02917718368644273 KIAAHERIR 9 Unmodified _KIAAHERIR_ 0 0 0 REV__L1PA4_dup9297|chr12:1733611-1736914:-|2.727589065125506|0.0522469925947301|5.71|151.0|68|2|sense REV__L1PA4_dup9297|chr12:1733611-1736914:-|2.727589065125506|0.0522469925947301|5.71|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 547.3320922851562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 94.005 1 94.005 93.505 94.505 0 0 0 0 0.39598 1 22798 22798 1.6526 0.85899 1 + 16554 29691 10627 10633 20140 20140 0.10899051448268438 KIAAHERIR 9 Unmodified _KIAAHERIR_ 0 0 0 REV__L1PA4_dup9297|chr12:1733611-1736914:-|2.727589065125506|0.0522469925947301|5.71|151.0|68|2|sense REV__L1PA4_dup9297|chr12:1733611-1736914:-|2.727589065125506|0.0522469925947301|5.71|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 547.3328857421875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 89.017 1 92.691 92.191 93.191 3.6738 0 0 0 0.39598 1 22255 22255 1.6526 0.85899 1 + 16555 29691 10627 10633 20141 20141 0.10899051448268438 KIADRFLLY 9 Unmodified _KIADRFLLY_ 0 0 0 ENSG00000143013|ENST00000370544|LMO4 ENSG00000143013|ENST00000370544|LMO4 ENSG00000143013|ENST00000370544|LMO4 MULTI-MSMS UPN48_class_I_Rep_2 6 569.8347778320312 2 569.834591 1137.65463 0.60621 0.00034544 -0.65562 -0.0003736 -0.049416 -2.8159E-05 569.8343693928992 55.127 0.62424 58.682 58.328 58.952 3.5559 64 35 2 0 0 0 0.24411 3 11718 11718;11765;11771 17.443 4.4002 1 165250 16556 3271 10628 10634 20142;20143;20144 20142 0.09130881782425604 KIADRFLLY 9 Unmodified _KIADRFLLY_ 0 0 0 ENSG00000143013|ENST00000370544|LMO4 ENSG00000143013|ENST00000370544|LMO4 ENSG00000143013|ENST00000370544|LMO4 MULTI-MSMS UPN48_class_I_Rep_3 7 569.835205078125 2 569.834591 1137.65463 0.33279 0.00018963 -0.2992 -0.00017049 0.033587 1.9139E-05 569.8344958289127 55.063 0.78234 58.632 58.277 59.06 3.5694 58 43 2 0 0 0 0.2924 2 11624 11579;11624 14.405 3.5815 1 189390 16557 3271 10628 10634 20145;20146 20146 0.09130881782425604 KIANHHSY 8 Unmodified _KIANHHSY_ 0 0 0 REV__L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|10|1|sense REV__L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|10|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 485.2486267089844 2 485.248683 968.482814 0.18827 9.1358E-05 -0.91353 -0.00044329 -0.72526 -0.00035193 485.248219756629 37.67 0.49709 37.67 37.391 37.889 0 58 47 2 0 0 0 0.72333 1 7106 7106 10.824 10.824 1 101920 + 16558 28135 10629 10635 20147 20147 -0.0026885018525035775 KIANTTLSKN 10 Unmodified _KIANTTLSKN_ 0 0 0 L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 544.7705078125 2 545.316763 1088.61897 0.54658 0.00029806 -0.026678 -1.4548E-05 0.5199 0.00028351 545.3166419970106 93.669 0.66733 97.405 97.165 97.833 3.736 183 91 3 0 0 0 0.84575 1 23248 23248 1.3295 0 1 219970 16559 9210 10630 10636 20148 20148 0.07820799534761136 KIANTTLSKN 10 Unmodified _KIANTTLSKN_ 0 0 0 L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.38213 0.00020838 -0.049976 -2.7253E-05 0.33216 0.00018113 545.3166594448261 97.407 0.21058 97.407 97.335 97.546 0 0.009953 -5.9111E-05 NaN 1.3295 42 22 3 NaN NaN NaN NaN 0 NaN NaN 0 663470 16560 9210 10630 10636 0.07820799534761136 KIANTTLSKN 10 Unmodified _KIANTTLSKN_ 0 0 0 L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense L1M5_dup9248|chr3:25741153-25741708:+|1.1065244987597704|0.1861169712382555|2.57|151.0|16|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 545.316763 1088.61897 0.48464 0.00026428 0.11295 6.1595E-05 0.5976 0.00032588 545.3167686296364 93.489 0.33928 97.38 97.305 97.644 3.8914 -0.017234 0.00011858 NaN 1.3295 88 41 3 NaN NaN NaN NaN 0 NaN NaN 0 341300 16561 9210 10630 10636 0.07820799534761136 KIAQRSKS 8 Unmodified _KIAQRSKS_ 0 0 0 LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|90|2|anti-sense LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|90|2|anti-sense LTR49-int_dup587|chr5:43090777-43092667:-|3.035031844143647|0.3856570970757926|2.98|151.0|90|2|anti-sense MSMS UPN46_class_I_Rep_3 1 459.280029296875 2 459.279983 916.545414 NaN NaN NaN NaN NaN NaN NaN 71.854 1 71.854 71.354 72.354 0 0 0 0 0.40604 1 16577 16577 2.5775 0 1 16562 15667 10631 10637 20149 20149 0.08380295882955124 KIASFKRIM 9 Unmodified _KIASFKRIM_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 547.3330688476562 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 88.952 1 92.405 91.905 92.905 3.4525 0 0 0 0.39598 1 22107 22107 1.6526 0.17072 1 + 16563 30336 10632 10638 20150 20150 0.10515245630199388 KIASFKRIM 9 Unmodified _KIASFKRIM_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 547.3323364257812 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 89.159 1 92.612 92.112 93.112 3.4525 0 0 0 0.39598 1 22155 22155 1.6526 0.17072 1 + 16564 30336 10632 10638 20151 20151 0.10515245630199388 KIASFKRIM 9 Unmodified _KIASFKRIM_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 547.3333129882812 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 89.293 1 92.745 92.245 93.245 3.4525 0 0 0 0.39598 1 22186 22186 1.6526 0.17072 1 + 16565 30336 10632 10638 20152 20152 0.10515245630199388 KIASFKRIM 9 Unmodified _KIASFKRIM_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 547.3447265625 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 89.509 1 92.961 92.461 93.461 3.4525 0 0 0 0.39598 1 22238 22238 1.6526 0.45928 1 + 16566 30336 10632 10638 20153 20153 0.10515245630199388 KIASFKRIM 9 Unmodified _KIASFKRIM_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 547.3330688476562 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 89.55 1 93.003 92.503 93.503 3.4525 0 0 0 0.39598 1 22248 22248 1.6526 0.45928 1 + 16567 30336 10632 10638 20154 20154 0.10515245630199388 KIASFKRIM 9 Unmodified _KIASFKRIM_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 547.3331298828125 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 89.975 1 93.432 92.932 93.932 3.4571 0 0 0 0.39598 1 22339 22339 1.6526 0.17072 1 + 16568 30336 10632 10638 20155 20155 0.10515245630199388 KIAYFYREA 9 Unmodified _KIAYFYREA_ 0 0 0 REV__LTR1A2_dup292|chr6:15435926-15436700:-|1.2694274910017658|0.0044591296719998|8.15|151.0|15|2|sense REV__LTR1A2_dup292|chr6:15435926-15436700:-|1.2694274910017658|0.0044591296719998|8.15|151.0|15|2|sense MSMS UPN48_class_I_Rep_3 7 580.8090209960938 2 580.808574 1159.60259 NaN NaN NaN NaN NaN NaN NaN 46.699 1 50.335 49.835 50.835 3.6363 0 0 0 0.38916 1 9086 9086 3.2813 0 1 + 16569 30869 10633 10639 20156 20156 0.029177183686670105 KICGPFVF 8 Unmodified _KICGPFVF_ 0 0 0 REV__Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|63|1|anti-sense REV__Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|63|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 456.0808410644531 2 455.746399 909.478245 0.11296 5.1479E-05 -1.999 -0.00091104 -1.8861 -0.00085956 455.7468050820057 56.609 0.037201 56.609 56.593 56.63 0 6 4 2 0 0 0 0.72333 1 12358 12358 5.7604 0 1 76511 + 16570 32496 10634 10640 20157 20157 0.01988549347629487 KICPEIDLQN 10 Unmodified _KICPEIDLQN_ 0 0 0 L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|68|3|sense L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|68|3|sense L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|68|3|sense MSMS UPN46_class_I_Rep_3 1 586.8026733398438 2 586.802631 1171.59071 NaN NaN NaN NaN NaN NaN NaN 56.888 1 56.888 56.388 57.388 0 0 0 0 0.53105 1 12434 12434 1.3295 0 1 16571 12233 10635 10641 20158 20158 0.011777335631904862 KIDDIFNEI 9 Unmodified _KIDDIFNEI_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS UPN47_class_I_Rep_2 3 553.790283203125 2 553.790047 1105.56554 0.38382 0.00021256 0.044225 2.4491E-05 0.42805 0.00023705 553.7899914781723 64.83 1.0107 68.086 67.594 68.605 3.2556 156 80 3 0 0 0 0.1249 4 15370 15370;15410;15492;15529 29.082 13.042 1 475820 16572 3786 10636 10642 20159;20160;20161;20162 20159 0.01698002032230761 KIDDIFNEI 9 Unmodified _KIDDIFNEI_ 0 0 0 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS UPN47_class_I_Rep_3 4 553.7907104492188 2 553.790047 1105.56554 0.43072 0.00023853 0.96951 0.00053691 1.4002 0.00077544 553.7899876279793 64.801 1.0263 67.98 67.552 68.579 3.1795 174 81 3 0 0 0 0.17897 4 15449 15449;15489;15608;15662 22.736 13.042 1 347970 16573 3786 10636 10642 20163;20164;20165;20166 20163 0.01698002032230761 KIDELVWNI 9 Unmodified _KIDELVWNI_ 0 0 0 REV__L1MC5a_dup6171|chr6:33408091-33408348:-|1.0974549106077247|0.2067754861817605|2.41|150.0|8|2|sense REV__L1MC5a_dup6171|chr6:33408091-33408348:-|1.0974549106077247|0.2067754861817605|2.41|150.0|8|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 565.3167724609375 2 565.316232 1128.61791 0.45581 0.00025768 -0.14229 -8.0437E-05 0.31353 0.00017724 565.3159380961982 94.448 0.10423 94.448 94.366 94.471 0 13 12 2 0 0 0 0.42249 1 22899 22899 6.7232 0.51738 1 76821 + 16574 27170 10637 10643 20167 20167 0.0587458516586139 KIEEANVSA 9 Unmodified _KIEEANVSA_ 0 0 0 REV__ENSG00000135842|ENST00000367511|NIBAN1 REV__ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS UPN47_class_I_Rep_2 3 480.7533264160156 2 480.753464 959.492375 -0.217 -0.00010432 -0.34411 -0.00016543 -0.56111 -0.00026976 480.7533790855214 40.241 0.75792 43.613 43.336 44.094 3.3712 111 49 3 0 0 0 0.17979 1 7947 7947 22.658 3.2961 1 251380 + 16575 19158 10638 10644 20168 20168 0.011008733096218748 KIEHVFVRKG 10 Unmodified _KIEHVFVRKG_ 0 0 0 L1MEf_dup6144|chr8:144741433-144742402:+|1.3395805219985144|0.2329400964709922|2.52|151.0|16|2|sense L1MEf_dup6144|chr8:144741433-144742402:+|1.3395805219985144|0.2329400964709922|2.52|151.0|16|2|sense L1MEf_dup6144|chr8:144741433-144742402:+|1.3395805219985144|0.2329400964709922|2.52|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 606.8634643554688 2 606.864215 1211.71388 NaN NaN NaN NaN NaN NaN NaN 109.28 1 109.28 108.78 109.78 0 0 0 0 0.53105 1 26814 26814 5.7319 0 1 16576 13303 10639 10645 20169 20169 0.11648777796585819 KIEKIKNNQ 9 Unmodified _KIEKIKNNQ_ 0 0 0 REV__ENSG00000106819|ENST00000375544|ASPN REV__ENSG00000106819|ENST00000375544|ASPN MULTI-MSMS UPN47_class_I_Rep_1 2 557.8328857421875 2 557.83258 1113.65061 -0.10193 -5.6859E-05 -0.82835 -0.00046208 -0.93028 -0.00051894 557.8319755996195 15.603 0.3289 19.099 18.983 19.312 3.4968 52 37 2 0 0 0 0.50088 1 880 880 0.52476 0 1 51111 + 16577 18343 10640 10646 20170 20170 0.09832792288671044 KIEKIKNNQ 9 Unmodified _KIEKIKNNQ_ 0 0 0 REV__ENSG00000106819|ENST00000375544|ASPN REV__ENSG00000106819|ENST00000375544|ASPN MSMS UPN47_class_I_Rep_2 3 557.8318481445312 2 557.83258 1113.65061 NaN NaN NaN NaN NaN NaN NaN 15.847 1 19.234 18.734 19.734 3.3864 0 0 0 0.39518 1 912 912 1.8442 0 1 + 16578 18343 10640 10646 20171 20171 0.09832792288671044 KIEKIKQIK 9 Unmodified _KIEKIKQIK_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 564.379638671875 2 564.379166 1126.74378 0.45223 0.00025523 -0.096695 -5.4573E-05 0.35553 0.00020066 564.3788716618338 109.52 0.23778 109.52 109.4 109.64 0 29 19 2 0 0 0 0.48846 1 26898 26898 1.8442 0 1 746940 + 16579 30580 10641 10647 20172 20172 0.18547716741909426 KIEKIKQIK 9 Unmodified _KIEKIKQIK_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.3792114257812 2 564.379166 1126.74378 0.63479 0.00035826 -0.20821 -0.00011751 0.42658 0.00024075 564.3789587193039 108.08 0.2934 111.62 111.37 111.66 3.5333 63 34 2 0 0 0 0.48846 1 26174 26174 1.8442 0 1 10385000 + 16580 30580 10641 10647 20173 20173 0.18547716741909426 KIEKIKQIK 9 Unmodified _KIEKIKQIK_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 564.3792724609375 2 564.379166 1126.74378 0.49074 0.00027696 -0.14493 -8.1794E-05 0.34581 0.00019517 564.378846139483 108.86 0.1666 112.54 112.47 112.64 3.6746 25 20 2 0 0 0 0.48846 1 25863 25863 1.8442 0 1 3232000 + 16581 30580 10641 10647 20174 20174 0.18547716741909426 KIEKIKQIK 9 Unmodified _KIEKIKQIK_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense MSMS UPN48_class_I_Rep_2 6 564.3795166015625 2 564.379166 1126.74378 NaN NaN NaN NaN NaN NaN NaN 109.64 1 113.31 112.81 113.81 3.6715 0 0 0 0.39518 1 26107 26107 1.8442 0 1 + 16582 30580 10641 10647 20175 20175 0.18547716741909426 KIEKIKQIK 9 Unmodified _KIEKIKQIK_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|96|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 564.379166 1126.74378 0.50111 0.00028281 -0.55892 -0.00031545 -0.057818 -3.2632E-05 564.3784672235456 108.63 0.094994 112.27 112.24 112.33 3.6355 -0.060284 -0.00082013 NaN 1.8442 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3314300 + 16583 30580 10641 10647 0.18547716741909426 KIEKLQQKI 9 Unmodified _KIEKLQQKI_ 0 0 0 nc|ENSG00000069667|P35398-4|RORA;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA nc|ENSG00000069667|P35398-4|RORA nc|ENSG00000069667|P35398-4|RORA MSMS UPN47_class_I_Rep_3 4 564.3793334960938 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 107.95 1 111.49 110.99 111.99 3.5382 0 0 0 0.37476 1 26379 26379 6.7232 0 1 16584 1059 10642 10648 20176 20176 0.14910839845219925 KIEKLQQKI 9 Unmodified _KIEKLQQKI_ 0 0 0 nc|ENSG00000069667|P35398-4|RORA;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA nc|ENSG00000069667|P35398-4|RORA nc|ENSG00000069667|P35398-4|RORA MSMS UPN48_class_I_Rep_2 6 564.3594360351562 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 109.43 1 113.1 112.6 113.6 3.6715 0 0 0 0.37476 1 26049 26049 6.7232 0 1 16585 1059 10642 10648 20177 20177 0.14910839845219925 KIEKLQQKI 9 Unmodified _KIEKLQQKI_ 0 0 0 nc|ENSG00000069667|P35398-4|RORA;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA nc|ENSG00000069667|P35398-4|RORA nc|ENSG00000069667|P35398-4|RORA MSMS UPN48_class_I_Rep_3 7 564.3790283203125 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 107.91 1 111.59 111.09 112.09 3.6813 0 0 0 0.37476 1 25486 25486 6.7232 0 1 16586 1059 10642 10648 20178 20178 0.14910839845219925 KIEKQIATSG 10 Unmodified _KIEKQIATSG_ 0 0 0 ENSG00000198168|ENST00000354193|SVIP;ENST00000533774.5_1_11:22844667-22850900:-|nuORF ENSG00000198168|ENST00000354193|SVIP ENSG00000198168|ENST00000354193|SVIP MSMS UPN47_class_I_Rep_3 4 537.8134765625 2 537.811313 1073.60807 NaN NaN NaN NaN NaN NaN NaN 109.07 1 112.61 112.11 113.11 3.5364 0 0 0 0.53105 1 26777 26777 11.495 0.6952 1 16587 5416 10643 10649 20179 20179 0.07421397160464949 KIELMIYKKKE 11 Unmodified _KIELMIYKKKE_ 0 0 0 REV__nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22 REV__nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22 MULTI-MSMS UPN48_class_I_Rep_2 6 474.95074462890625 3 474.951146 1421.83161 0.21968 0.00010434 -0.18165 -8.6274E-05 0.038033 1.8064E-05 474.95092204739433 102.62 0.41447 106.33 106.17 106.58 3.7108 82 60 2 0 0 0 0.68219 1 24347 24347 0.32927 0 1 220780 + 16588 18909 10644 10650 20180 20180 0.13756549550339514 KIELMIYKKKE 11 Unmodified _KIELMIYKKKE_ 0 0 0 REV__nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22 REV__nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22 MULTI-MATCH UPN48_class_I_Rep_1 5 3 474.951146 1421.83161 0.095957 4.5575E-05 -0.47356 -0.00022492 -0.3776 -0.00017934 474.9506823477821 102.68 0.040878 106.3 106.26 106.3 3.6164 -0.015062 -0.00038373 NaN 0.32927 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 133810 + 16589 18909 10644 10650 0.13756549550339514 KIEMYRHIKKL 11 Unmodified _KIEMYRHIKKL_ 0 0 0 REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|53|2|sense REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|53|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.958740234375 3 486.958635 1457.85407 0.25379 0.00012358 0.81741 0.00039805 1.0712 0.00052163 486.95885100478586 94.226 0.35419 98.002 97.896 98.251 3.7761 89 47 3 0 0 0 0.68132 1 22401 22401 0.40827 0 1 191330 + 16590 24124 10645 10651 20181 20181 0.14346193738629154 KIEQKLTKH 9 Unmodified _KIEQKLTKH_ 0 0 0 REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|58|2|sense REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|58|2|sense MSMS UPN46_class_I_Rep_3 1 562.84130859375 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.06 1 108.06 107.56 108.56 0 0 0 0 0.27207 1 26390 26390 12.241 0 1 + 16591 27413 10646 10652 20182 20182 0.11445382668352977 KIESHKLHK 9 Unmodified _KIESHKLHK_ 0 0 0 REV__L1MEc_dup7453|chr6:142194213-142196619:-|2.852345976774643|0.1337625414318995|4.41|151.0|70|3|sense REV__L1MEc_dup7453|chr6:142194213-142196619:-|2.852345976774643|0.1337625414318995|4.41|151.0|70|3|sense MSMS UPN48_class_I_Rep_2 6 560.6697998046875 2 560.33529 1118.65603 NaN NaN NaN NaN NaN NaN NaN 100.72 1 104.47 103.97 104.97 3.7417 0 0 0 0.38639 1 23915 23915 3.9444 1.6417 1 + 16592 28476 10647 10653 20183 20183 0.10144515871161275 KIETRKKE 8 Unmodified _KIETRKKE_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|53|3|sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|53|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 516.3137817382812 2 516.314023 1030.61349 0.32406 0.00016732 0.087029 4.4934E-05 0.41109 0.00021225 516.313979045666 94.138 0.29608 94.138 94.08 94.376 0 77 34 4 0 0 0 0.72333 1 22881 22881 4.3292 0 1 1989700 + 16593 24576 10648 10654 20184 20184 0.0994112074295117 KIETRKKE 8 Unmodified _KIETRKKE_ 0 0 0 REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|53|3|sense REV__L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|53|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 516.314023 1030.61349 0.24276 0.00012534 0.13359 6.8974E-05 0.37635 0.00019432 516.3139684199366 90.829 0.29852 94.291 94.174 94.473 3.4613 0.076295 3.4072E-05 NaN 4.3292 78 39 3 NaN NaN NaN NaN 0 NaN NaN 0 1156500 + 16594 24576 10648 10654 0.0994112074295117 KIETRKSIS 9 Unmodified _KIETRKSIS_ 0 0 0 REV__L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|36|3|sense REV__L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|36|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.3195190429688 2 531.319306 1060.62406 0.33683 0.00017897 -0.086364 -4.5887E-05 0.25047 0.00013308 531.3191809650745 89.679 0.52381 89.679 89.371 89.895 0 112 47 3 0 0 0 0.47197 1 21552 21552 3.5965 0 1 827680 + 16595 24817 10649 10655 20185 20185 0.0961710339736328 KIETRKSIS 9 Unmodified _KIETRKSIS_ 0 0 0 REV__L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|36|3|sense REV__L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|36|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 531.319306 1060.62406 0.42168 0.00022405 -0.27241 -0.00014473 0.14927 7.9311E-05 531.3190962834177 86.163 0.40251 89.778 89.594 89.996 3.6153 0.15081 3.3676E-05 NaN 3.5965 79 47 2 NaN NaN NaN NaN 0 NaN NaN 0 98515 + 16596 24817 10649 10655 0.0961710339736328 KIETRKSIS 9 Unmodified _KIETRKSIS_ 0 0 0 REV__L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|36|3|sense REV__L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|36|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 531.319306 1060.62406 0.37822 0.00020095 -0.31306 -0.00016633 0.065159 3.462E-05 531.319041348331 86.29 0.55025 89.723 89.362 89.912 3.4329 0.095395 -9.5232E-06 NaN 3.5965 123 75 2 NaN NaN NaN NaN 0 NaN NaN 0 87078 + 16597 24817 10649 10655 0.0961710339736328 KIEVKKYKG 9 Unmodified _KIEVKKYKG_ 0 0 0 REV__ENSG00000184292|ENST00000371225|TACSTD2 REV__ENSG00000184292|ENST00000371225|TACSTD2 MSMS UPN47_class_I_Rep_2 3 546.8405151367188 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 93.317 1 96.786 96.286 97.286 3.4687 0 0 0 0.39518 1 23032 23032 1.8442 0 1 + 16598 20812 10650 10656 20186 20186 0.1281116829943585 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_1 2 581.3297119140625 2 581.329339 1160.64412 0.34418 0.00020008 0.091954 5.3455E-05 0.43613 0.00025354 581.3293101831157 65.771 1.2034 69.129 68.741 69.944 3.3576 168 74 3 0 0 0 0.21294 5 15705 15629;15668;15705;15750;15792 46.475 22.685 1 951540 16599 1166;2720;33467 10651 10657 20187;20188;20189;20190;20191 20189 0.07022854337333229 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_2 3 581.3295288085938 2 581.329339 1160.64412 0.37118 0.00021578 0.076746 4.4614E-05 0.44793 0.00026039 581.3293145962901 66.17 1.0227 69.429 68.926 69.949 3.2588 161 62 4 0 0 0 0.22158 7 15864 15745;15759;15766;15822;15864;15918;15960 53.317 18.385 1 708760 16600 1166;2720;33467 10651 10657 20192;20193;20194;20195;20196;20197;20198 20196 0.07022854337333229 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MSMS UPN47_class_I_Rep_2 3 581.3294677734375 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.686 1 69.945 69.445 70.445 3.2588 0 0 0 0.53105 1 16036 16036 9.544 1.935 1 16601 1166;2720;33467 10651 10657 20199 20199 0.07022854337333229 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_3 4 581.3295288085938 2 581.329339 1160.64412 0.43817 0.00025472 0.0052639 3.0601E-06 0.44343 0.00025778 581.3292505524337 66.183 1.3706 69.368 68.926 70.296 3.1853 220 98 3 0 0 0 0.21584 8 15912 15824;15870;15912;15952;15992;16037;16081;16159 42.835 19.045 1 770560 16602 1166;2720;33467 10651 10657 20200;20201;20202;20203;20204;20205;20206;20207 20202 0.07022854337333229 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MATCH UPN47_class_I_Rep_3 4 2 581.329339 1160.64412 0.43678 0.00025391 0.069275 4.0272E-05 0.50605 0.00029418 581.3294317245474 65.732 0.056343 68.912 68.864 68.92 3.1795 -0.24469 -1.6756E-05 NaN 46.475 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 30589 16603 1166;2720;33467 10651 10657 0.07022854337333229 KIFKKFKKVR 10 Unmodified _KIFKKFKKVR_ 0 0 0 REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 441.2974853515625 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 75.06 1 75.06 74.56 75.56 0 0 0 0 0.53105 1 17430 17430 0.15932 0 1 + 16604 32735 10652 10658 20208 20208 0.22819366549515507 KIFKKFKKVR 10 Unmodified _KIFKKFKKVR_ 0 0 0 REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 53.511 1 56.706 56.206 57.206 3.1948 0 0 0 0.53105 1 12077 12077 0.15932 0 1 + 16605 32735 10652 10658 20209 20209 0.22819366549515507 KIFKKFKKVR 10 Unmodified _KIFKKFKKVR_ 0 0 0 REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense REV__Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN48_class_I_Rep_2 6 441.29779052734375 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 26.578 1 30.212 29.712 30.712 3.6332 0 0 0 0.53105 1 3403 3403 0.13989 0 1 + 16606 32735 10652 10658 20210 20210 0.22819366549515507 KIFKYRYFKLF 11 Unmodified _KIFKYRYFKLF_ 0 0 0 REV__L1MD1_dup5134|chr12:116189735-116190284:-|2.203467802561224|0.0134618366045831|7.35|151.0|29|2|anti-sense REV__L1MD1_dup5134|chr12:116189735-116190284:-|2.203467802561224|0.0134618366045831|7.35|151.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 518.3085327148438 3 518.30614 1551.89659 NaN NaN NaN NaN NaN NaN NaN 43.993 1 43.993 43.493 44.493 0 0 0 0 0.38417 1 8828 8828 0.094841 0.011491 1 + 16607 27354 10653 10659 20211 20211 0.14271912138519838 KIFLIRRP 8 Unmodified _KIFLIRRP_ 0 0 0 REV__nc|ENSG00000274391|P56180-4|TPTE REV__nc|ENSG00000274391|P56180-4|TPTE MSMS UPN47_class_I_Rep_3 4 521.9913940429688 2 521.847836 1041.68112 NaN NaN NaN NaN NaN NaN NaN 85.856 1 89.228 88.728 89.728 3.3716 0 0 0 0.40746 1 21513 21513 0.69038 0 1 + 16608 21427 10654 10660 20212 20212 0.16194615464405615 KIFNNVLKY 9 Unmodified _KIFNNVLKY_ 0 0 0 REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|16|3|sense REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|16|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 569.8346557617188 2 569.834591 1137.65463 0.33279 0.00018963 -0.2992 -0.00017049 0.033587 1.9139E-05 569.8344958289127 55.063 0.78234 58.632 58.277 59.06 3.5694 58 43 2 0 0 0 0.42249 1 11693 11693 6.7232 2.7788 1 189390 + 16609 28030 10655 10661 20213 20213 0.09130881782402867 KIFRQNCSL 9 Unmodified _KIFRQNCSL_ 0 0 0 REV__ENSG00000144130|ENST00000688554|NT5DC4 REV__ENSG00000144130|ENST00000688554|NT5DC4 MSMS UPN48_class_I_Rep_2 6 554.7980346679688 2 554.800226 1107.5859 NaN NaN NaN NaN NaN NaN NaN 65.731 1 69.217 68.717 69.717 3.4866 0 0 0 0.3377 1 14962 14962 8.7454 0 1 + 16610 19478 10656 10662 20214 20214 0.03640894211048362 KIGKCKETESR 11 Unmodified _KIGKCKETESR_ 0 0 0 L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|39|3|sense L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|39|3|sense L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 639.8453369140625 2 639.845361 1277.67617 NaN NaN NaN NaN NaN NaN NaN 30.489 1 34.031 33.531 34.531 3.542 0 0 0 0.38417 1 4382 4382 1.0715 0.5467 1 16611 10987 10657 10663 20215 20215 0.04843898748799802 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN47_class_I_Rep_2 3 435.3002014160156 2 435.300188 868.585822 -0.3871 -0.0001685 0.66389 0.00028899 0.27679 0.00012049 435.30041757718925 63.225 0.53916 66.48 66.415 66.954 3.2558 84 43 3 0 0 0 0.82752 1 15041 15041 2.3027 0 1 570290 + 16612 19306 10658 10664 20216 20216 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN47_class_I_Rep_3 4 435.3000793457031 2 435.300188 868.585822 -0.42736 -0.00018603 0.64063 0.00027887 0.21327 9.2839E-05 435.3004502189498 63.412 0.28371 66.582 66.433 66.716 3.1698 31 21 2 0 0 0 0.82752 1 15098 15098 2.3027 0 1 264900 + 16613 19306 10658 10664 20217 20217 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN48_class_I_Rep_1 5 435.30023193359375 2 435.300188 868.585822 0.080801 3.5173E-05 0.084629 3.6839E-05 0.16543 7.2012E-05 435.3002093623414 63.093 0.24092 66.555 66.429 66.67 3.4625 24 14 2 0 0 0 0.82752 2 14150 14150;14192 2.3027 0 1 410470 + 16614 19306 10658 10664 20218;20219 20218 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN48_class_I_Rep_1 5 435.3002014160156 2 435.300188 868.585822 0.074591 3.247E-05 0.23658 0.00010298 0.31117 0.00013545 435.3002681543142 63.512 0.168 66.97 66.866 67.034 3.4578 32 14 3 0 0 0 0.82752 1 14307 14307 2.3027 0 1 499930 + 16615 19306 10658 10664 20220 20220 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN48_class_I_Rep_1 5 435.3005676269531 2 435.300188 868.585822 0.071197 3.0992E-05 0.34454 0.00014998 0.41574 0.00018097 435.3002666906238 63.681 0.27024 67.139 67.022 67.292 3.4578 42 22 2 0 0 0 0.82752 1 14386 14386 2.3027 0 1 590000 + 16616 19306 10658 10664 20221 20221 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MSMS UPN48_class_I_Rep_2 6 435.3004455566406 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 63.008 1 66.482 65.982 66.982 3.4738 0 0 0 0.40625 1 14131 14131 2.3027 0 1 + 16617 19306 10658 10664 20222 20222 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN48_class_I_Rep_3 7 435.30029296875 2 435.300188 868.585822 0.15654 6.8143E-05 0.12052 5.2463E-05 0.27706 0.00012061 435.3001823318125 63.39 0.22713 66.9 66.86 67.087 3.5091 22 18 2 0 0 0 0.82752 1 14213 14213 2.3027 0 1 1060900 + 16618 19306 10658 10664 20223 20223 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN48_class_I_Rep_3 7 435.30078125 2 435.300188 868.585822 0.17627 7.673E-05 0.10648 4.635E-05 0.28275 0.00012308 435.30025723223287 65.878 0.45464 69.385 69.034 69.488 3.5077 40 29 2 0 0 0 0.82752 1 14880 14880 2.3027 0 1 228360 + 16619 19306 10658 10664 20224 20224 0.14627262273359065 KIGKKKPA 8 Unmodified _KIGKKKPA_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-SECPEP UPN48_class_I_Rep_3 7 434.8819885253906 2 435.300188 868.585822 0.1555 6.7688E-05 0.12978 5.6492E-05 0.28527 0.00012418 435.30020151562127 63.289 0.13839 66.798 66.731 66.87 3.5091 21 11 2 0 0 0 0.72333 1 14118 14118 2.3027 0 1 536200 + 16620 19306 10658 10664 20225 20225 0.14627262273359065 KIGKKMTK 8 Unmodified _KIGKKMTK_ 0 0 0 REV__L1MCa_dup5933|chr13:112798501-112799301:+|2.637290457092468|0.0485043250477936|5.76|151.0|12|2|sense REV__L1MCa_dup5933|chr13:112798501-112799301:+|2.637290457092468|0.0485043250477936|5.76|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 467.3009338378906 2 467.29933 932.584108 NaN NaN NaN NaN NaN NaN NaN 106.44 1 109.98 109.48 110.48 3.5367 0 0 0 0.40753 1 26024 26024 0.6015 0 1 + 16621 27217 10659 10665 20226 20226 0.11511885193112903 KIGLYVYLP 9 Unmodified _KIGLYVYLP_ 0 0 0 L1MB8_dup11129|chr11:76504305-76505180:+|1.188477490322768|0.0512719378335016|4.53|151.0|63|3|anti-sense L1MB8_dup11129|chr11:76504305-76505180:+|1.188477490322768|0.0512719378335016|4.53|151.0|63|3|anti-sense L1MB8_dup11129|chr11:76504305-76505180:+|1.188477490322768|0.0512719378335016|4.53|151.0|63|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 533.1912231445312 2 533.320786 1064.62702 0.30867 0.00016462 -0.12367 -6.5958E-05 0.185 9.8663E-05 533.3207195945096 62.805 0.64229 66.061 65.698 66.341 3.2558 68 38 2 0 0 0 0.12444 1 14766 14766 2.0598 0.21551 1 103790 16622 10909 10660 10666 20227 20227 0.09728978522161924 KIGMLKRFK 9 Unmodified _KIGMLKRFK_ 0 0 0 REV__ENST00000531389.2_1_12:122991347-122991437:-|nuORF REV__ENST00000531389.2_1_12:122991347-122991437:-|nuORF MSMS UPN47_class_I_Rep_1 2 560.8566284179688 2 560.854804 1119.69505 NaN NaN NaN NaN NaN NaN NaN 112.01 1 115.58 115.08 116.08 3.572 0 0 0 0.4007 1 27636 27636 0.52476 0.52476 1 + 16623 18444 10661 10667 20228 20228 0.13999524901191762 KIGNHGSNIS 10 Unmodified _KIGNHGSNIS_ 0 0 0 REV__L1MA2_dup5721|chr12:11040719-11042620:+|1.31008568811956|0.1453049791181434|3.17|151.0|34|2|sense REV__L1MA2_dup5721|chr12:11040719-11042620:+|1.31008568811956|0.1453049791181434|3.17|151.0|34|2|sense MSMS UPN47_class_I_Rep_1 2 513.76806640625 2 513.76998 1025.52541 NaN NaN NaN NaN NaN NaN NaN 23.325 1 27.03 26.53 27.53 3.7042 0 0 0 0.53105 1 2866 2866 1.1933 0.39971 1 + 16624 24901 10662 10668 20229 20229 0.013665001523349929 KIHAHICLL 9 Unmodified _KIHAHICLL_ 0 0 0 L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|98|2|sense;L1PA3_dup9871|chr16:69665185-69667330:+|1.1245222748245978|0.1582303920374353|2.83|151.0|54|3|sense;L1PA8_dup5552|chr10:75766634-75767441:-|1.011674486802825|0.0136487138435242|6.21|147.0|7|1|sense;L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|35|1|sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|98|2|sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|98|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 524.8125 2 524.310229 1046.60591 0.45307 0.00023755 -1.3622 -0.00071424 -0.90917 -0.00047669 524.309177820461 60.976 0.20632 64.455 64.344 64.551 3.4785 24 17 2 0 0 0 0.40174 1 13506 13506 7.9102 0.62092 1 68634 16625 14877 10663 10669 20230 20230 0.08446689941661134 KIHEYRYL 8 Unmodified _KIHEYRYL_ 0 0 0 L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|49|2|anti-sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|49|2|anti-sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.3067626953125 2 561.308741 1120.60293 NaN NaN NaN NaN NaN NaN NaN 29.162 1 32.891 32.391 33.391 3.7286 0 0 0 0.40643 1 4058 4058 2.0598 0 1 16626 15340 10664 10670 20231 20231 0.0474513808849224 KIHEYRYL 8 Unmodified _KIHEYRYL_ 0 0 0 L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|49|2|anti-sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|49|2|anti-sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.3067626953125 2 561.308741 1120.60293 NaN NaN NaN NaN NaN NaN NaN 29.396 1 33.124 32.624 33.624 3.7286 0 0 0 0.40643 1 4118 4118 2.0598 0 1 16627 15340 10664 10670 20232 20232 0.0474513808849224 KIHKGKKYK 9 Unmodified _KIHKGKKYK_ 0 0 0 HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|41|2|sense HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|41|2|sense HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|41|2|sense MSMS UPN47_class_I_Rep_2 3 565.8073120117188 2 565.36385 1128.71315 NaN NaN NaN NaN NaN NaN NaN 87.362 1 90.803 90.303 91.303 3.4407 0 0 0 0.4007 1 21715 21715 0.52476 0 1 16628 7932 10665 10671 20233 20233 0.15393983147532708 KIHLSQEY 8 Unmodified _KIHLSQEY_ 0 0 0 REV__ENST00000559016.1_1_15:49426483-49429634:-|nuORF REV__ENST00000559016.1_1_15:49426483-49429634:-|nuORF MSMS UPN47_class_I_Rep_2 3 509.2845458984375 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 40.168 1 43.54 43.04 44.04 3.3712 0 0 0 0.4044 1 7968 7968 4.756 0.42677 1 + 16629 20159 10666 10672 20234 20234 0.021491699261900976 KIHPVKIYNS 10 Unmodified _KIHPVKIYNS_ 0 0 0 L1MB7_dup1947|chr2:26115054-26115770:+|4.413912669157044|0.1888326915856552|4.55|151.0|50|3|anti-sense L1MB7_dup1947|chr2:26115054-26115770:+|4.413912669157044|0.1888326915856552|4.55|151.0|50|3|anti-sense L1MB7_dup1947|chr2:26115054-26115770:+|4.413912669157044|0.1888326915856552|4.55|151.0|50|3|anti-sense MSMS UPN46_class_I_Rep_3 1 400.2380676269531 3 400.236274 1197.68699 NaN NaN NaN NaN NaN NaN NaN 109.94 1 109.94 109.44 110.44 0 0 0 0 0.53105 1 27050 27050 3.5871 1.1523 1 16630 10772 10667 10673 20235 20235 0.0960566918540735 KIHQKKKKKK 10 Unmodified _KIHQKKKKKK_ 0 0 0 L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense MSMS UPN48_class_I_Rep_3 7 647.4451904296875 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 108.44 1 112.12 111.62 112.62 3.6751 0 0 0 0.53105 1 25664 25664 0.40072 0 1 16631 9418 10668 10674 20236 20236 0.2421358091842194 KIHVWMYY 8 Unmodified _KIHVWMYY_ 0 0 0 ENST00000519948.3_1_12:74932986-74933157:+|nuORF ENST00000519948.3_1_12:74932986-74933157:+|nuORF ENST00000519948.3_1_12:74932986-74933157:+|nuORF MSMS UPN47_class_I_Rep_1 2 570.291015625 2 570.288963 1138.56337 NaN NaN NaN NaN NaN NaN NaN 72.712 1 76.092 75.592 76.592 3.3799 0 0 0 0.39624 1 17809 17809 9.3474 0 1 16632 7224 10669 10675 20237 20237 -0.00036705186562357994 KIIDFIYTA 9 Unmodified _KIIDFIYTA_ 0 0 0 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_1 2 542.3081665039062 2 542.307875 1082.6012 0.38375 0.00020811 -0.18336 -9.9436E-05 0.20039 0.00010867 542.307652301692 65.781 1.0956 69.138 68.708 69.804 3.3576 157 67 3 0 0 0 0.006303 5 15730 15615;15695;15730;15769;15812 83.429 41.589 1 679330 16633 5445;676 10670 10676 20238;20239;20240;20241;20242 20240 0.06320084279923321 KIIDFIYTA 9 Unmodified _KIIDFIYTA_ 0 0 0 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_2 3 542.3079833984375 2 542.307875 1082.6012 0.33223 0.00018017 -0.1151 -6.2422E-05 0.21713 0.00011775 542.30768243547 66.169 1.0788 69.428 68.926 70.005 3.2588 148 67 3 0 0 0 0.0065234 5 15887 15772;15810;15849;15887;15931 74.2 39.798 1 612400 16634 5445;676 10670 10676 20243;20244;20245;20246;20247 20246 0.06320084279923321 KIIDFIYTA 9 Unmodified _KIIDFIYTA_ 0 0 0 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_3 4 542.3078002929688 2 542.307875 1082.6012 0.41959 0.00022755 -0.094142 -5.1054E-05 0.32545 0.00017649 542.3077359852571 66.183 0.62199 69.368 68.855 69.477 3.1853 93 38 3 0 0 0 0.0055879 4 15921 15836;15881;15921;15959 80.676 36.632 1 509430 16635 5445;676 10670 10676 20248;20249;20250;20251 20250 0.06320084279923321 KIIDFIYTA 9 Unmodified _KIIDFIYTA_ 0 0 0 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13 ENSG00000198642|ENST00000359039|KLHL9;nc|ENSG00000003096|Q9P2N7-2|KLHL13 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_3 4 542.3079833984375 2 542.307875 1082.6012 0.42054 0.00022806 -0.12515 -6.7869E-05 0.29539 0.00016019 542.3076922017029 66.347 0.55164 69.533 69.456 70.008 3.1853 81 43 3 0 0 0 0.013215 2 15999 15999;16043 67.838 38.757 1 348740 16636 5445;676 10670 10676 20252;20253 20252 0.06320084279923321 KIIELKRKVC 10 Unmodified _KIIELKRKVC_ 0 0 0 ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A ENST00000482776.1_1_7:56124009-56126486:+|nuORF ENST00000482776.1_1_7:56124009-56126486:+|nuORF MSMS UPN47_class_I_Rep_1 2 615.3927612304688 2 615.391751 1228.76895 NaN NaN NaN NaN NaN NaN NaN 100.96 1 104.75 104.25 105.25 3.7942 0 0 0 0.53105 1 24931 24931 1.4819 0 1 16637 3442 10671 10677 20254 20254 0.16371448272866473 KIIELKRKVC 10 Unmodified _KIIELKRKVC_ 0 0 0 ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A ENST00000482776.1_1_7:56124009-56126486:+|nuORF ENST00000482776.1_1_7:56124009-56126486:+|nuORF MSMS UPN48_class_I_Rep_3 7 615.3921508789062 2 615.391751 1228.76895 NaN NaN NaN NaN NaN NaN NaN 93.101 1 96.979 96.479 97.479 3.8782 0 0 0 0.53105 1 22061 22061 1.4819 0 1 16638 3442 10671 10677 20255 20255 0.16371448272866473 KIIFHRIG 8 Unmodified _KIIFHRIG_ 0 0 0 L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|67|3|sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|67|3|sense L1PA16_dup11146|chr13:39056650-39058833:-|1.02189231345965|0.0511360117658455|4.32|151.0|67|3|sense MSMS UPN47_class_I_Rep_2 3 492.3106384277344 2 492.311087 982.60762 NaN NaN NaN NaN NaN NaN NaN 58.312 1 61.594 61.094 62.094 3.2818 0 0 0 0.4044 1 13489 13489 4.756 0 1 16639 14023 10672 10678 20256 20256 0.11562067021941402 KIIFQYIYTLL 11 Unmodified _KIIFQYIYTLL_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|57|3|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|57|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.2835998535156 3 472.283001 1413.82717 0.26566 0.00012547 0.50203 0.0002371 0.76769 0.00036257 472.28310254526804 93.092 0.2569 96.561 96.345 96.602 3.4687 44 35 2 0 0 0 0.68024 1 22962 22962 0.50596 0.051438 1 92283 + 16640 31197 10673 10679 20257 20257 0.13681408399133943 KIIKMGMWV 9 Unmodified _KIIKMGMWV_ 0 0 0 REV__L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|14|1|sense REV__L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|14|1|sense MSMS UPN47_class_I_Rep_2 3 553.3161010742188 2 553.316666 1104.61878 NaN NaN NaN NaN NaN NaN NaN 65.803 1 69.062 68.562 69.562 3.2588 0 0 0 0.39518 1 15768 15768 1.8442 0.19162 1 + 16641 30716 10674 10680 20258 20258 0.07065385009559577 KIIKRKISPVL 11 Unmodified _KIIKRKISPVL_ 0 0 0 ENST00000441802.6_1_4:187509466-187509727:-|nuORF ENST00000441802.6_1_4:187509466-187509727:-|nuORF ENST00000441802.6_1_4:187509466-187509727:-|nuORF MSMS UPN47_class_I_Rep_2 3 432.3011169433594 3 432.302619 1293.88603 NaN NaN NaN NaN NaN NaN NaN 107.45 1 110.99 110.49 111.49 3.5345 0 0 0 0.38417 1 26002 26002 0.08335 0.08335 1 16642 6779 10675 10681 20259 20259 0.25083929484117107 KIIQTRFRKR 10 Unmodified _KIIQTRFRKR_ 0 0 0 ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL MSMS UPN48_class_I_Rep_2 6 449.624267578125 3 449.289484 1344.84662 NaN NaN NaN NaN NaN NaN NaN 99.733 1 103.49 102.99 103.99 3.7575 0 0 0 0.53105 1 23689 23689 0.15932 0.01943 1 16643 4816 10676 10682 20260 20260 0.18799222253232983 KIISETRPY 9 Unmodified _KIISETRPY_ 0 0 0 REV__L1PA6_dup3602|chrX:63479531-63484467:+|1.1201663718762165|0.0605074139182198|4.21|151.0|100|2|sense REV__L1PA6_dup3602|chrX:63479531-63484467:+|1.1201663718762165|0.0605074139182198|4.21|151.0|100|2|sense MSMS UPN48_class_I_Rep_2 6 553.812255859375 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 22.211 1 25.857 25.357 26.357 3.6459 0 0 0 0.39598 1 2230 2230 1.6526 0 1 + 16644 29887 10677 10683 20261 20261 0.06457701023077789 KIITAGLSIL 10 Unmodified _KIITAGLSIL_ 0 0 0 ENST00000581444.5_1_18:20889645-20956810:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241 ENST00000581444.5_1_18:20889645-20956810:-|nuORF ENST00000581444.5_1_18:20889645-20956810:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 514.8392333984375 2 514.839342 1027.66413 -0.035452 -1.8252E-05 0.24322 0.00012522 0.20776 0.00010697 514.8393916925186 47.333 0.60964 50.683 50.343 50.952 3.3504 68 42 2 0 0 0 0.56118 1 10115 10115 2.9952 0 1 123850 16645 2852 10678 10684 20262 20262 0.15140650067974093 KIIVYGRIE 9 Unmodified _KIIVYGRIE_ 0 0 0 REV__ENSG00000132703|ENST00000255040|APCS REV__ENSG00000132703|ENST00000255040|APCS MSMS UPN48_class_I_Rep_1 5 545.8324584960938 2 545.834591 1089.65463 NaN NaN NaN NaN NaN NaN NaN 89.287 1 92.913 92.413 93.413 3.6255 0 0 0 0.39598 1 21436 21436 1.6526 1.1279 1 + 16646 19030 10679 10685 20263 20263 0.11338881782398857 KIIWAWIW 8 Unmodified _KIIWAWIW_ 0 0 0 ENST00000557114.5_1_14:20797398-20797455:-|nuORF ENST00000557114.5_1_14:20797398-20797455:-|nuORF ENST00000557114.5_1_14:20797398-20797455:-|nuORF MSMS UPN46_class_I_Rep_3 1 558.324951171875 2 558.323663 1114.63277 NaN NaN NaN NaN NaN NaN NaN 94.71 1 94.71 94.21 95.21 0 0 0 0 0.40604 1 22976 22976 2.5775 0.73324 1 16647 7435 10680 10686 20264 20264 0.08004121824501453 KIKADIIY 8 Unmodified _KIKADIIY_ 0 0 0 ENST00000517601.1_1_8:71550856-71556444:-|nuORF;ENST00000522558.1_1_8:71553109-71556351:-|nuORF;ENSG00000147592|ENST00000276590|LACTB2 ENST00000517601.1_1_8:71550856-71556444:-|nuORF ENST00000517601.1_1_8:71550856-71556444:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 482.2971496582031 2 482.29731 962.580068 -0.23793 -0.00011475 -0.043784 -2.1117E-05 -0.28172 -0.00013587 482.2972180898943 42.101 0.63618 45.78 45.404 46.04 3.6792 74 43 2 0 0 0 0.82752 1 8489 8489 10.183 0 1 100300 16648 3481 10681 10687 20265 20265 0.09728118971020194 KIKAKISISD 10 Unmodified _KIKAKISISD_ 0 0 0 REV__L1ME3A_dup13078|chr16:10466053-10466791:-|1.6816521790118746|0.2086460340026921|3.01|150.0|8|1|sense REV__L1ME3A_dup13078|chr16:10466053-10466791:-|1.6816521790118746|0.2086460340026921|3.01|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 551.8427124023438 2 551.845156 1101.67576 NaN NaN NaN NaN NaN NaN NaN 85.391 1 88.997 88.497 89.497 3.6059 0 0 0 0.53105 1 20423 20423 1.6526 0 1 + 16649 27997 10682 10688 20266 20266 0.1289884709128728 KIKGWRNSYQ 10 Unmodified _KIKGWRNSYQ_ 0 0 0 L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|79|3|sense L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|79|3|sense L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|79|3|sense MSMS UPN47_class_I_Rep_3 4 640.3484497070312 2 640.348929 1278.6833 NaN NaN NaN NaN NaN NaN NaN 30.308 1 33.62 33.12 34.12 3.3116 0 0 0 0.53105 1 5013 5013 0.40072 0 1 16650 14684 10683 10689 20267 20267 0.055109994115582595 KIKHEFYYY 9 Unmodified _KIKHEFYYY_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|12|1|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|12|1|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 645.8300170898438 2 645.829506 1289.64446 NaN NaN NaN NaN NaN NaN NaN 54.726 1 57.912 57.412 58.412 3.1856 0 0 0 0.3979 1 12450 12450 0.6015 0 1 16651 15328 10684 10690 20268 20268 0.011222740571838585 KIKKKKKKFWK 11 Unmodified _KIKKKKKKFWK_ 0 0 0 L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|36|2|sense L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|36|2|sense L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 497.3412170410156 3 497.341296 1489.00206 NaN NaN NaN NaN NaN NaN NaN 26.39 1 29.957 29.457 30.457 3.5667 0 0 0 0.38417 1 3232 3232 0 0 1 16652 8675 10685 10691 20269 20269 0.27711873054795433 KIKKLHAI 8 Unmodified _KIKKLHAI_ 0 0 0 L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|44|2|sense L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|44|2|sense L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|44|2|sense MSMS UPN47_class_I_Rep_2 3 475.8275146484375 2 475.829112 949.643671 NaN NaN NaN NaN NaN NaN NaN 94.638 1 98.11 97.61 98.61 3.472 0 0 0 0.40798 1 23318 23318 0 0 1 16653 11717 10686 10692 20270 20270 0.16683524198776922 KIKLFQLRKLY 11 Unmodified _KIKLFQLRKLY_ 0 0 0 Charlie5_dup2081|chr15:63550318-63551800:-|2.624100085061213|0.1553626096967438|4.08|151.0|32|2|sense Charlie5_dup2081|chr15:63550318-63551800:-|2.624100085061213|0.1553626096967438|4.08|151.0|32|2|sense Charlie5_dup2081|chr15:63550318-63551800:-|2.624100085061213|0.1553626096967438|4.08|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 483.646728515625 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 47.637 1 51.333 50.833 51.833 3.6951 0 0 0 0.38417 1 10206 10206 0.094841 0 1 16654 534 10687 10693 20271 20271 0.216636010298771 KIKLGHYA 8 Unmodified _KIKLGHYA_ 0 0 0 ENST00000468312.1_1_17:40370167-40384145:-|nuORF;STAT5A|p.S710Wfs*23|1|0.31|ENSG00000126561|chr17:42309390-42309400|TCTGCAGATGC/-|frameshift_variant;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B;ENSG00000126561|ENST00000590949|STAT5A ENST00000468312.1_1_17:40370167-40384145:-|nuORF ENST00000468312.1_1_17:40370167-40384145:-|nuORF MSMS UPN47_class_I_Rep_2 3 465.2704772949219 2 465.281995 928.549437 NaN NaN NaN NaN NaN NaN NaN 99.716 1 103.21 102.71 103.71 3.4974 0 0 0 0.40738 1 24397 24397 0.79363 0 1 16655 2540 10688 10694 20272 20272 0.08230385376646154 KIKRIKLRF 9 Unmodified _KIKRIKLRF_ 0 0 0 L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|24|1|sense L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|24|1|sense L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|24|1|sense MSMS UPN48_class_I_Rep_1 5 601.41552734375 2 601.416417 1200.81828 NaN NaN NaN NaN NaN NaN NaN 33.278 1 36.798 36.298 37.298 3.5201 0 0 0 0.4029 1 5170 5170 0 0 1 16656 8518 10689 10695 20273 20273 0.22590524343945617 KIKRWIYPK 9 Unmodified _KIKRWIYPK_ 0 0 0 L1M1_dup5526|chrX:79245664-79248823:+|4.208571957472215|0.0382545707923447|6.78|150.0|86|3|sense L1M1_dup5526|chrX:79245664-79248823:+|4.208571957472215|0.0382545707923447|6.78|150.0|86|3|sense L1M1_dup5526|chrX:79245664-79248823:+|4.208571957472215|0.0382545707923447|6.78|150.0|86|3|sense MSMS UPN48_class_I_Rep_2 6 616.3851318359375 2 616.387326 1230.7601 NaN NaN NaN NaN NaN NaN NaN 59.542 1 63.029 62.529 63.529 3.4868 0 0 0 0.4007 1 13071 13071 0.52476 0 1 16657 8599 10690 10696 20274 20274 0.153948426986517 KIKRWRKIYQE 11 Unmodified _KIKRWRKIYQE_ 0 0 0 L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|94|2|sense L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|94|2|sense L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|94|2|sense MSMS UPN48_class_I_Rep_3 7 516.6448364257812 3 516.643815 1546.90962 NaN NaN NaN NaN NaN NaN NaN 97.89 1 101.79 101.29 102.29 3.9022 0 0 0 0.38417 1 23192 23192 0.094841 0.094841 1 16658 14526 10691 10697 20275 20275 0.15803743250626212 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8250122070312 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 59.422 1 59.422 58.922 59.922 0 0 0 0 0.27207 1 13134 13134 12.241 0 1 16659 5798 10692 10698 20276 20276 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8236694335938 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 59.54 1 59.54 59.04 60.04 0 0 0 0 0.027993 1 13170 13170 47.594 13.193 1 16660 5798 10692 10698 20277 20277 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8238525390625 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 59.661 1 59.661 59.161 60.161 0 0 0 0 8.4991E-08 1 13206 13206 74.2 18.023 1 16661 5798 10692 10698 20278 20278 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8236694335938 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 59.78 1 59.78 59.28 60.28 0 0 0 0 3.8437E-43 1 13236 13236 114.2 39.273 1 16662 5798 10692 10698 20279 20279 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.82373046875 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 59.906 1 59.906 59.406 60.406 0 0 0 0 3.0582E-17 1 13267 13267 93.166 24.061 1 16663 5798 10692 10698 20280 20280 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8238525390625 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 60.035 1 60.035 59.535 60.535 0 0 0 0 8.4991E-08 1 13301 13301 74.2 18.023 1 16664 5798 10692 10698 20281 20281 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8238525390625 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 60.152 1 60.152 59.652 60.652 0 0 0 0 0.02515 1 13331 13331 51.415 17.014 1 16665 5798 10692 10698 20282 20282 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8239135742188 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 60.271 1 60.271 59.771 60.771 0 0 0 0 0.027993 1 13362 13362 47.594 13.193 1 16666 5798 10692 10698 20283 20283 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8238525390625 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 60.405 1 60.405 59.905 60.905 0 0 0 0 0.087549 1 13398 13398 27.223 4.487 1 16667 5798 10692 10698 20284 20284 0.0888407703384928 KIKSFEVVF 9 Unmodified _KIKSFEVVF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 548.8238525390625 2 548.823692 1095.63283 NaN NaN NaN NaN NaN NaN NaN 60.634 1 60.634 60.134 61.134 0 0 0 0 0.28608 1 13459 13459 11.495 2.1473 1 16668 5798 10692 10698 20285 20285 0.0888407703384928 KIKTKIYHL 9 Unmodified _KIKTKIYHL_ 0 0 0 L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|23|3|sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|23|3|sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|23|3|sense MSMS UPN47_class_I_Rep_2 3 572.3645629882812 2 572.366059 1142.71756 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.54 114.04 115.04 3.5271 0 0 0 0.40038 1 27025 27025 0.6015 0 1 16669 10239 10693 10699 20286 20286 0.15191447570441596 KIKTKKRLEKH 11 Unmodified _KIKTKKRLEKH_ 0 0 0 L1MEc_dup792|chr1:113693683-113695204:+|1.1923985275240927|0.2779634231000895|2.1|150.0|32|2|sense L1MEc_dup792|chr1:113693683-113695204:+|1.1923985275240927|0.2779634231000895|2.1|150.0|32|2|sense L1MEc_dup792|chr1:113693683-113695204:+|1.1923985275240927|0.2779634231000895|2.1|150.0|32|2|sense MSMS UPN47_class_I_Rep_2 3 470.2801513671875 3 470.308544 1407.9038 NaN NaN NaN NaN NaN NaN NaN 84.296 1 87.719 87.219 88.219 3.4232 0 0 0 0.38417 1 21023 21023 0.094841 0 1 16670 13141 10694 10700 20287 20287 0.21616644738946889 KIKVRVVLE 9 Unmodified _KIKVRVVLE_ 0 0 0 ENST00000263636.4_1_2:160663558-160663612:-|nuORF ENST00000263636.4_1_2:160663558-160663612:-|nuORF ENST00000263636.4_1_2:160663558-160663612:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 542.366455078125 2 542.366059 1082.71756 0.53487 0.0002901 0.16676 9.0445E-05 0.70163 0.00038054 542.3660014127903 108.23 0.68577 111.87 111.48 112.17 3.6355 167 59 4 0 0 0 0.48643 1 26609 26609 2.0598 0 1 10887000 16671 5981 10695 10701 20288 20288 0.17951447570476375 KIKVRVVLE 9 Unmodified _KIKVRVVLE_ 0 0 0 ENST00000263636.4_1_2:160663558-160663612:-|nuORF ENST00000263636.4_1_2:160663558-160663612:-|nuORF ENST00000263636.4_1_2:160663558-160663612:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 542.366455078125 2 542.366059 1082.71756 0.59662 0.00032359 0.50582 0.00027434 1.1024 0.00059792 542.3663560298744 108.2 0.68981 111.73 111.38 112.07 3.5333 171 73 4 0 0 0 0.48643 1 26286 26286 2.0598 0 1 15182000 16672 5981 10695 10701 20289 20289 0.17951447570476375 KIKVRVVLE 9 Unmodified _KIKVRVVLE_ 0 0 0 ENST00000263636.4_1_2:160663558-160663612:-|nuORF ENST00000263636.4_1_2:160663558-160663612:-|nuORF ENST00000263636.4_1_2:160663558-160663612:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 542.3661499023438 2 542.366059 1082.71756 0.39869 0.00021623 0.6056 0.00032845 1.0043 0.00054469 542.3659853590816 108.13 0.36736 111.77 111.47 111.84 3.6313 85 31 4 0 0 0 0.48643 1 26130 26130 2.0598 0 1 7718700 16673 5981 10695 10701 20290 20290 0.17951447570476375 KILCRRRKA 9 Unmodified _KILCRRRKA_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MSMS UPN47_class_I_Rep_2 3 572.364501953125 2 572.366401 1142.71825 NaN NaN NaN NaN NaN NaN NaN 111.24 1 114.76 114.26 115.26 3.5226 0 0 0 0.4007 1 27071 27071 0.52476 0.12405 1 16674 2546 10696 10702 20291 20291 0.15259963738526494 KILDLETQL 9 Unmodified _KILDLETQL_ 0 0 0 ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2 ENST00000488909.1_1_9:131260677-131262531:+|nuORF ENST00000488909.1_1_9:131260677-131262531:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 536.8163452148438 2 536.816064 1071.61758 0.41312 0.00022177 0.052818 2.8354E-05 0.46594 0.00025012 536.8160121468031 60.174 0.61741 63.573 63.172 63.79 3.3982 155 47 4 0 0 0 1.0254E-30 1 14051 14051 135.86 39.497 1 1299300 16675 2989 10697 10703 20292 20292 0.08463165446005405 KILDLETQL 9 Unmodified _KILDLETQL_ 0 0 0 ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2 ENST00000488909.1_1_9:131260677-131262531:+|nuORF ENST00000488909.1_1_9:131260677-131262531:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 536.8162841796875 2 536.816064 1071.61758 0.42894 0.00023026 0.016555 8.887E-06 0.44549 0.00023915 536.8159982040609 60.403 0.72565 63.669 63.364 64.09 3.2654 125 58 4 0 0 0 0.034559 1 14118 14118 62.869 15.137 1 1292400 16676 2989 10697 10703 20293 20293 0.08463165446005405 KILDLETQL 9 Unmodified _KILDLETQL_ 0 0 0 ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2 ENST00000488909.1_1_9:131260677-131262531:+|nuORF ENST00000488909.1_1_9:131260677-131262531:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 536.8162841796875 2 536.816064 1071.61758 0.3479 0.00018676 0.033081 1.7758E-05 0.38098 0.00020452 536.8159970821984 60.523 0.53819 63.688 63.311 63.849 3.1651 108 39 4 0 0 0 0.034559 1 14199 14199 62.869 15.137 1 1097100 16677 2989 10697 10703 20294 20294 0.08463165446005405 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS UPN47_class_I_Rep_1 2 486.29229736328125 2 486.292225 970.569897 0.087086 4.2349E-05 0.19017 9.2476E-05 0.27725 0.00013483 486.29220730518375 54.431 0.88888 57.932 57.51 58.398 3.5014 99 47 3 0 0 0 0.088679 5 12294 12205;12231;12294;12335;12372 36.506 19.393 1 311170 16678 1309 10698 10704 20295;20296;20297;20298;20299 20297 0.08343511245811897 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS UPN47_class_I_Rep_2 3 486.2922058105469 2 486.292225 970.569897 0.31708 0.0001542 -0.13094 -6.3676E-05 0.18614 9.052E-05 486.29201204517494 54.546 0.97989 57.865 57.579 58.559 3.3187 91 52 3 0 0 0 0.062142 2 12349 12302;12349 43.772 28.934 1 355960 16679 1309 10698 10704 20300;20301 20301 0.08343511245811897 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS UPN47_class_I_Rep_3 4 486.2923889160156 2 486.292225 970.569897 0.14868 7.2302E-05 0.11102 5.3988E-05 0.2597 0.00012629 486.2922123818221 54.873 0.92555 58.059 57.643 58.569 3.1856 121 54 3 0 0 0 0.088679 3 12497 12453;12497;12569 36.506 17.249 1 282780 16680 1309 10698 10704 20302;20303;20304 20303 0.08343511245811897 KILELLRHMV 10 Unmodified _KILELLRHMV_ 0 0 0 PTCD3|p.Q417Sfs*35|1|0.13|ENSG00000132300|chr2:86131082-86131083|-/T|frameshift_variant;ENSG00000132300|ENST00000254630|PTCD3;ENST00000484203.5_1_2:86348636-86354493:+|nuORF PTCD3|p.Q417Sfs*35|1|0.13|ENSG00000132300|chr2:86131082-86131083|-/T|frameshift_variant PTCD3|p.Q417Sfs*35|1|0.13|ENSG00000132300|chr2:86131082-86131083|-/T|frameshift_variant MSMS UPN47_class_I_Rep_3 4 626.3862915039062 2 626.383926 1250.7533 NaN NaN NaN NaN NaN NaN NaN 106.1 1 109.64 109.14 110.14 3.5367 0 0 0 0.53105 1 25951 25951 1.4819 0.28856 1 16681 2742 10699 10705 20305 20305 0.13795161755820118 KILGGEWLLMN 11 Unmodified _KILGGEWLLMN_ 0 0 0 REV__ENSG00000206530|ENST00000393845|CFAP44 REV__ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN47_class_I_Rep_1 2 637.3497924804688 2 637.352291 1272.69003 NaN NaN NaN NaN NaN NaN NaN 80.926 1 84.413 83.913 84.913 3.4874 0 0 0 0.38417 1 20175 20175 1.0715 0.5467 1 + 16682 21233 10700 10706 20306 20306 0.06459176247903997 KILGYSRIML 10 Unmodified _KILGYSRIML_ 0 0 0 Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|69|3|sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|69|3|sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|69|3|sense MSMS UPN48_class_I_Rep_1 5 597.35791015625 2 597.357376 1192.7002 NaN NaN NaN NaN NaN NaN NaN 90.998 1 94.624 94.124 95.124 3.626 0 0 0 0.53105 1 21868 21868 1.4819 0 1 16683 33187 10701 10707 20307 20307 0.11155783973163125 KILKKVILPQP 11 Unmodified _KILKKVILPQP_ 0 0 0 L1ME4b_dup3876|chr3:56635412-56635586:+|1.2172757121598292|0.1875630854335422|2.7|150.0|9|1|anti-sense L1ME4b_dup3876|chr3:56635412-56635586:+|1.2172757121598292|0.1875630854335422|2.7|150.0|9|1|anti-sense L1ME4b_dup3876|chr3:56635412-56635586:+|1.2172757121598292|0.1875630854335422|2.7|150.0|9|1|anti-sense MSMS UPN48_class_I_Rep_3 7 426.29510498046875 3 426.295353 1275.86423 NaN NaN NaN NaN NaN NaN NaN 71.098 1 74.616 74.116 75.116 3.5185 0 0 0 0.38417 1 16487 16487 0.45452 0.046251 1 16684 12928 10702 10708 20308 20308 0.23733124735554156 KILLVIALKL 10 Unmodified _KILLVIALKL_ 0 0 0 L1ME1_dup24231|chr13:99327848-99329398:-|2.9391185864492324|0.0790755885186007|5.22|151.0|78|1|anti-sense L1ME1_dup24231|chr13:99327848-99329398:-|2.9391185864492324|0.0790755885186007|5.22|151.0|78|1|anti-sense L1ME1_dup24231|chr13:99327848-99329398:-|2.9391185864492324|0.0790755885186007|5.22|151.0|78|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3436889648438 2 562.412478 1122.8104 NaN NaN NaN NaN NaN NaN NaN 84.425 1 84.425 83.925 84.925 0 0 0 0 0.53105 1 20085 20085 0 0 1 16685 12323 10703 10709 20309 20309 0.2539095230381463 KILMKHVWI 9 Unmodified _KILMKHVWI_ 0 0 0 L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|19|3|sense L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|19|3|sense L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 584.3560791015625 2 584.357179 1166.69981 NaN NaN NaN NaN NaN NaN NaN 84.049 1 87.614 87.114 88.114 3.5655 0 0 0 0.40038 1 21027 21027 0.6015 0.076735 1 16686 11663 10704 10710 20310 20310 0.12312409043966 KILMKVPC 8 Unmodified _KILMKVPC_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MSMS UPN46_class_I_Rep_3 1 466.27728271484375 2 466.277009 930.539466 NaN NaN NaN NaN NaN NaN NaN 110.31 1 110.31 109.81 110.81 0 0 0 0 0.40738 1 27164 27164 0.79363 0 1 + 16687 19023 10705 10711 20311 20311 0.07141738055418045 KILMRNQLLI 10 Unmodified _KILMRNQLLI_ 0 0 0 L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|106|1|anti-sense L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|106|1|anti-sense L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|106|1|anti-sense MSMS UPN46_class_I_Rep_3 1 621.3924560546875 2 621.391751 1240.76895 NaN NaN NaN NaN NaN NaN NaN 101.36 1 101.36 100.86 101.86 0 0 0 0 0.53105 1 24729 24729 1.6526 0.17072 1 16688 8998 10706 10712 20312 20312 0.1581944827287316 KILNTDKLL 9 Unmodified _KILNTDKLL_ 0 0 0 REV__ENSG00000138792|ENST00000265162|ENPEP REV__ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS UPN48_class_I_Rep_2 6 529.3345947265625 2 529.334424 1056.6543 0.47972 0.00025393 -0.21018 -0.00011125 0.26954 0.00014268 529.3341699134611 53.191 0.724 56.801 56.546 57.27 3.6098 107 46 3 0 0 0 0.21527 1 11199 11199 19.257 0 1 369330 + 16689 19296 10707 10713 20313 20313 0.12823462062556246 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS UPN46_class_I_Rep_3 1 492.31036376953125 2 492.310418 982.606283 0.23395 0.00011518 -0.19454 -9.5776E-05 0.03941 1.9402E-05 492.3102440355017 63.666 0.23949 63.666 63.486 63.725 0 41 29 2 0 0 0 0.074399 2 14309 14276;14309 39.95 9.3132 1 322920 16690 3313 10708 10714 20314;20315 20315 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-SECPEP UPN47_class_I_Rep_1 2 492.31048583984375 2 492.310418 982.606283 0.14425 7.1016E-05 0.081247 3.9999E-05 0.2255 0.00011102 492.31037438978467 57.117 0.90461 60.574 60.349 61.254 3.4572 174 80 3 0 0 0 0.043847 1 13088 13088 32.786 8.7651 1 458460 16691 3313 10708 10714 20316 20316 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-SECPEP UPN47_class_I_Rep_2 3 492.31036376953125 2 492.310418 982.606283 0.36506 0.00017972 -0.29028 -0.00014291 0.074778 3.6814E-05 492.3101690671164 57.468 0.85938 60.76 60.472 61.331 3.2912 163 71 3 0 0 0 0.044693 1 13272 13272 49.554 15.153 1 738050 16692 3313 10708 10714 20317 20317 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS UPN47_class_I_Rep_3 4 492.3106689453125 2 492.310418 982.606283 0.12324 6.0673E-05 -0.085485 -4.2085E-05 0.037756 1.8588E-05 492.31028080463466 57.729 0.92059 60.897 60.481 61.402 3.1681 152 70 3 0 0 0 0.20317 1 13417 13417 20.415 6.5085 1 490120 16693 3313 10708 10714 20318 20318 0.11428388142519452 KILRRKPYKP 10 Unmodified _KILRRKPYKP_ 0 0 0 REV__L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|8|1|sense REV__L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 649.9219360351562 2 649.924606 1297.83466 NaN NaN NaN NaN NaN NaN NaN 108.01 1 111.64 111.14 112.14 3.6355 0 0 0 0.53105 1 26499 26499 0.40072 0 1 + 16694 28275 10709 10715 20319 20319 0.19765605510065143 KILRRRRKIKR 11 Unmodified _KILRRRRKIKR_ 0 0 0 ENST00000320876.10_2_18:2688638-2694582:+|nuORF ENST00000320876.10_2_18:2688638-2694582:+|nuORF ENST00000320876.10_2_18:2688638-2694582:+|nuORF MSMS UPN46_class_I_Rep_3 1 508.44073486328125 3 508.358343 1522.0532 NaN NaN NaN NaN NaN NaN NaN 51.025 1 51.025 50.525 51.525 0 0 0 0 0.38417 1 10816 10816 0.08335 0.08335 1 16695 6151 10710 10716 20320 20320 0.3130563487222844 KILSKYYCS 9 Unmodified _KILSKYYCS_ 0 0 0 Tigger1_dup3306|chr4:101328575-101330445:+|2.749665118025873|0.0869165188145341|4.98|151.0|16|1|sense;Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|40|3|sense Tigger1_dup3306|chr4:101328575-101330445:+|2.749665118025873|0.0869165188145341|4.98|151.0|16|1|sense Tigger1_dup3306|chr4:101328575-101330445:+|2.749665118025873|0.0869165188145341|4.98|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 552.7913208007812 2 552.791535 1103.56852 NaN NaN NaN NaN NaN NaN NaN 31.44 1 35.142 34.642 35.642 3.7015 0 0 0 0.4007 1 4655 4655 0.52476 0 1 16696 33075 10711 10717 20321 20321 0.020875538853715625 KILSSLYKAA 10 Unmodified _KILSSLYKAA_ 0 0 0 ENST00000261489.6_2_13:45010747-45010900:-|nuORF ENST00000261489.6_2_13:45010747-45010900:-|nuORF ENST00000261489.6_2_13:45010747-45010900:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.3331298828125 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 69.278 1 72.482 71.982 72.982 3.2044 0 0 0 0.53105 1 16882 16882 1.1933 0.66858 1 16697 5958 10712 10718 20322 20322 0.11167462062553568 KILVVDPV 8 Unmodified _KILVVDPV_ 0 0 0 REV__ENSG00000169251|ENST00000351193|NMD3 REV__ENSG00000169251|ENST00000351193|NMD3 MSMS UPN47_class_I_Rep_1 2 441.7877502441406 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 40.453 1 44.125 43.625 44.625 3.6719 0 0 0 0.40643 1 8023 8023 2.0598 1.3694 1 + 16698 20306 10713 10719 20323 20323 0.11308733942325944 KILWRRPQKPR 11 Unmodified _KILWRRPQKPR_ 0 0 0 L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|134|2|sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|134|2|sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|134|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.3126525878906 3 493.3124 1476.91537 0.26932 0.00013286 -0.36496 -0.00018004 -0.095637 -4.7179E-05 493.31238782321606 45.951 0.43894 45.951 45.79 46.229 0 83 46 2 0 0 0 0.65891 1 9369 9369 2.4348 1.22 1 245150 16699 9877 10714 10720 20324 20324 0.1959888655294435 KIMQPSEEA 9 Unmodified _KIMQPSEEA_ 0 0 0 REV__L1ME3B_dup3626|chr7:140904907-140905806:-|1.675378380399535|0.0154408393099375|6.76|151.0|28|3|sense REV__L1ME3B_dup3626|chr7:140904907-140905806:-|1.675378380399535|0.0154408393099375|6.76|151.0|28|3|sense MSMS UPN48_class_I_Rep_2 6 516.7567138671875 2 516.755149 1031.49575 NaN NaN NaN NaN NaN NaN NaN 37.006 1 40.708 40.208 41.208 3.7021 0 0 0 0.39518 1 6282 6282 1.8442 1.0506 1 + 16700 28053 10715 10721 20325 20325 -0.018741999080248206 KINGKVAER 9 Unmodified _KINGKVAER_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MSMS UPN46_class_I_Rep_3 1 507.8059997558594 2 507.806365 1013.59818 NaN NaN NaN NaN NaN NaN NaN 13.307 1 13.307 12.807 13.807 0 0 0 0 0.36857 1 351 351 7.1017 0 1 16701 4299 10716 10722 20326 20326 0.09192253945752782 KINHNRLVK 9 Unmodified _KINHNRLVK_ 0 0 0 REV__nc|ENSG00000197442|Q99683-2|MAP3K5 REV__nc|ENSG00000197442|Q99683-2|MAP3K5 MSMS UPN46_class_I_Rep_3 1 561.34912109375 2 561.348732 1120.68291 NaN NaN NaN NaN NaN NaN NaN 69.83 1 69.83 69.33 70.33 0 0 0 0 0.4007 1 16020 16020 0.52476 0 1 + 16702 21082 10717 10723 20327 20327 0.12739624482355794 KIPALDPEK 9 Unmodified _KIPALDPEK_ 0 0 0 nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;ERBB3|p.P860Lfs*40|1|0.11|ENSG00000065361|chr12:56097901-56097901|G/-|frameshift_variant nc|ENSG00000065361|P21860-4|ERBB3 nc|ENSG00000065361|P21860-4|ERBB3 MULTI-SECPEP UPN46_class_I_Rep_3 1 505.2509765625 2 505.797675 1009.5808 0.071615 3.6223E-05 0.07286 3.6853E-05 0.14448 7.3076E-05 505.79760325397916 30.845 0.36659 30.845 30.576 30.943 0 32 29 2 0 0 0 0.1249 1 5037 5037 1.4819 0 1 60159 16703 1005 10718 10724 20328 20328 0.07638913620087351 KIPNFVKLY 9 Unmodified _KIPNFVKLY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MSMS UPN48_class_I_Rep_1 5 561.3400268554688 2 561.33951 1120.66447 NaN NaN NaN NaN NaN NaN NaN 79.405 1 82.94 82.44 83.44 3.5352 0 0 0 0.38639 1 18952 18952 3.9444 0 1 + + 16704 17471 10719 10725 20329 20329 0.10896069787804663 KIPNFVKLY 9 Unmodified _KIPNFVKLY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MSMS UPN48_class_I_Rep_3 7 561.33935546875 2 561.33951 1120.66447 NaN NaN NaN NaN NaN NaN NaN 79.079 1 82.721 82.221 83.221 3.6423 0 0 0 0.38639 1 18739 18739 3.9444 1.4459 1 + + 16705 17471 10719 10725 20330 20330 0.10896069787804663 KIQHLLRIKK 10 Unmodified _KIQHLLRIKK_ 0 0 0 L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|152|3|sense L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|152|3|sense L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|152|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 638.932861328125 2 638.932431 1275.85031 0.63015 0.00040262 -0.80509 -0.0005144 -0.17494 -0.00011177 638.931930266369 108.16 0.38388 111.84 111.76 112.15 3.6813 62 37 2 0 0 0 0.56486 1 25662 25662 0.40072 0 1 3864500 16706 9799 10720 10726 20331 20331 0.2234189202708876 KIQKLVRRAPI 11 Unmodified _KIQKLVRRAPI_ 0 0 0 AluSg4_dup524|chr1:204535986-204536266:+|1.065868893862579|0.2685397390319749|1.99|151.0|8|3|sense AluSg4_dup524|chr1:204535986-204536266:+|1.065868893862579|0.2685397390319749|1.99|151.0|8|3|sense AluSg4_dup524|chr1:204535986-204536266:+|1.065868893862579|0.2685397390319749|1.99|151.0|8|3|sense MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.259 1 65.426 64.926 65.926 3.1667 0 0 0 0.38417 1 14747 14747 0.45452 0.29519 1 16707 219 10721 10727 20332 20332 0.22417277055842533 KIQKTPLFVAA 11 Unmodified _KIQKTPLFVAA_ 0 0 0 ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP ENST00000512908.2_1_5:70398727-70422449:-|nuORF ENST00000512908.2_1_5:70398727-70422449:-|nuORF MSMS UPN48_class_I_Rep_1 5 608.3758544921875 2 608.376623 1214.73869 NaN NaN NaN NaN NaN NaN NaN 107.8 1 111.43 110.93 111.93 3.6313 0 0 0 0.36307 1 26005 26005 8.1555 0 1 16708 5735 10722 10728 20333 20333 0.13991412879340714 KIQKVYIFY 9 Unmodified _KIQKVYIFY_ 0 0 0 REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|29|2|anti-sense REV__L1ME3F_dup567|chr2:74034249-74034897:-|1.71797442849726|0.0309879216665582|5.79|151.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 601.3536376953125 2 601.352617 1200.69068 NaN NaN NaN NaN NaN NaN NaN 85.717 1 85.717 85.217 86.217 0 0 0 0 0.40038 1 20462 20462 0.6015 0 1 + 16709 28180 10723 10729 20334 20334 0.0983633895928051 KIQNFGFF 8 Unmodified _KIQNFGFF_ 0 0 0 L1MEd_dup13920|chr10:12241406-12241769:-|1.785295753064722|0.1926990740528431|3.21|151.0|22|3|anti-sense L1MEd_dup13920|chr10:12241406-12241769:-|1.785295753064722|0.1926990740528431|3.21|151.0|22|3|anti-sense L1MEd_dup13920|chr10:12241406-12241769:-|1.785295753064722|0.1926990740528431|3.21|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7774353027344 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 110.89 1 114.42 113.92 114.92 3.529 0 0 0 0.40746 1 27206 27206 0.69038 0 1 16710 13168 10724 10730 20335 20335 0.018023926227101583 KIQNQYVL 8 Unmodified _KIQNQYVL_ 0 0 0 REV__L1MA3_dup154|chr1:84508821-84509485:+|1.0062582899511083|0.1438315414644409|2.81|151.0|7|1|sense REV__L1MA3_dup154|chr1:84508821-84509485:+|1.0062582899511083|0.1438315414644409|2.81|151.0|7|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 503.7638244628906 2 503.290017 1004.56548 0.33472 0.00016846 0.31307 0.00015757 0.6478 0.00032603 503.7918101257484 50.972 0.45012 54.189 54.02 54.47 3.2163 24 20 2 0 0 0 0.72333 1 11270 11270 8.5933 2.2392 1 45962 + 16711 24978 10725 10731 20336 20336 0.06338046822895649 KIQSRGMKRI 10 Unmodified _KIQSRGMKRI_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|28|1|sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|28|1|sense MSMS UPN48_class_I_Rep_2 6 406.2425537109375 3 406.248408 1215.72339 NaN NaN NaN NaN NaN NaN NaN 100.08 1 103.84 103.34 104.34 3.7575 0 0 0 0.53105 1 23776 23776 1.7423 0.14999 1 + 16712 30237 10726 10732 20337 20337 0.12416222810497857 KIQTDVKLL 9 Unmodified _KIQTDVKLL_ 0 0 0 REV__ENST00000469368.1_1_X:74289115-74291374:-|nuORF REV__ENST00000469368.1_1_X:74289115-74291374:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 529.334228515625 2 529.334424 1056.6543 0.47972 0.00025393 -0.21018 -0.00011125 0.26954 0.00014268 529.3341699134611 53.191 0.724 56.801 56.546 57.27 3.6098 107 46 3 0 0 0 0.20317 1 11121 11121 20.415 2.0414 1 369330 + 16713 18971 10727 10733 20338 20338 0.12823462062578983 KIQYFFNY 8 Unmodified _KIQYFFNY_ 0 0 0 REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|48|2|sense REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|48|2|sense MSMS UPN47_class_I_Rep_1 2 561.7820434570312 2 561.784567 1121.55458 NaN NaN NaN NaN NaN NaN NaN 41.459 1 45.133 44.633 45.633 3.6743 0 0 0 0.40625 1 8328 8328 2.3027 0 1 + 16714 24327 10728 10734 20339 20339 -0.0013335555140656652 KIQYFFNY 8 Unmodified _KIQYFFNY_ 0 0 0 REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|48|2|sense REV__L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|48|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 561.78369140625 2 561.784567 1121.55458 0.06362 3.5741E-05 -3.4302 -0.001927 -3.3666 -0.0018913 561.7824202974393 42.039 0.10342 45.278 45.236 45.339 3.2394 13 8 3 0 0 0 0.82752 1 8603 8603 2.3027 0 1 45758 + 16715 24327 10728 10734 20340 20340 -0.0013335555140656652 KIQYKYLY 8 Unmodified _KIQYKYLY_ 0 0 0 REV__L1MA2_dup5725|chr12:11116448-11118712:+|1.6541511750814255|0.0377898919506798|5.45|151.0|44|2|sense REV__L1MA2_dup5725|chr12:11116448-11118712:+|1.6541511750814255|0.0377898919506798|5.45|151.0|44|2|sense MSMS UPN46_class_I_Rep_3 1 559.817138671875 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 83.189 1 83.189 82.689 83.689 0 0 0 0 0.40625 1 19746 19746 2.3027 0.4585 1 + 16716 24903 10729 10735 20341 20341 0.06307790516802925 KIRCIMLLVN 10 Unmodified _KIRCIMLLVN_ 0 0 0 REV__L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|25|3|sense REV__L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|25|3|sense MSMS UPN48_class_I_Rep_1 5 601.8584594726562 2 601.859229 1201.70391 NaN NaN NaN NaN NaN NaN NaN 95.168 1 98.785 98.285 99.285 3.6167 0 0 0 0.53105 1 22914 22914 1.4819 0 1 + 16717 28342 10730 10736 20342 20342 0.11112130475339654 KIRCIMLLVN 10 Unmodified _KIRCIMLLVN_ 0 0 0 REV__L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|25|3|sense REV__L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|25|3|sense MSMS UPN48_class_I_Rep_1 5 601.857666015625 2 601.859229 1201.70391 NaN NaN NaN NaN NaN NaN NaN 95.227 1 98.843 98.343 99.343 3.6167 0 0 0 0.53105 1 22930 22930 1.4819 0 1 + 16718 28342 10730 10736 20343 20343 0.11112130475339654 KIRCLLKKKYR 11 Unmodified _KIRCLLKKKYR_ 0 0 0 ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.64678955078125 3 483.646391 1447.91734 -0.1158 -5.6007E-05 0.42483 0.00020547 0.30903 0.00014946 483.6465705089619 46.597 1.1917 50.297 49.306 50.497 3.6999 149 76 3 0 0 0 0.68081 1 9760 9760 0.45452 0.31463 1 430440 16719 6351 10731 10737 20344 20344 0.2113017924655196 KIRCLLKKKYR 11 Unmodified _KIRCLLKKKYR_ 0 0 0 ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF MSMS UPN47_class_I_Rep_2 3 483.6466369628906 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 73.171 1 76.469 75.969 76.969 3.2971 0 0 0 0.38417 1 17977 17977 0.50596 0.41111 1 16720 6351 10731 10737 20345 20345 0.2113017924655196 KIRCLLKKKYR 11 Unmodified _KIRCLLKKKYR_ 0 0 0 ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 483.9809875488281 3 483.646391 1447.91734 0.1988 9.6149E-05 0.13655 6.6042E-05 0.33535 0.00016219 483.98095640250375 49.904 0.25512 53.598 53.439 53.694 3.6946 23 15 2 0 0 0 0.68478 1 10137 10137 0.094841 0 1 207570 16721 6351 10731 10737 20346 20346 0.2113017924655196 KIRCLLKKKYR 11 Unmodified _KIRCLLKKKYR_ 0 0 0 ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 483.646391 1447.91734 0.2046 9.8956E-05 0.37721 0.00018244 0.58182 0.00028139 483.646462818786 53.599 0.080849 53.599 53.552 53.633 0 0.050789 0.00021901 NaN 0.094841 20 9 4 NaN NaN NaN NaN 0 NaN NaN 0 344110 16722 6351 10731 10737 0.2113017924655196 KIRCLLKKKYR 11 Unmodified _KIRCLLKKKYR_ 0 0 0 ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 483.646391 1447.91734 0.21023 0.00010168 -0.13319 -6.4417E-05 0.077043 3.7261E-05 483.6464603619285 50.173 0.22744 53.516 53.372 53.599 3.3431 -0.032402 -0.00052155 NaN 0.094841 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 105790 16723 6351 10731 10737 0.2113017924655196 KIRCLLKKKYR 11 Unmodified _KIRCLLKKKYR_ 0 0 0 ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 483.646391 1447.91734 0.13061 6.3168E-05 -0.0033187 -1.6051E-06 0.12729 6.1563E-05 483.64646564758766 49.955 0.25531 53.48 53.379 53.634 3.5246 -0.068339 -0.00033312 NaN 0.094841 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 191850 16724 6351 10731 10737 0.2113017924655196 KIRCRILSRRT 11 Unmodified _KIRCRILSRRT_ 0 0 0 L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|41|2|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|41|2|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|41|2|sense MSMS UPN47_class_I_Rep_3 4 467.9581604003906 3 467.957628 1400.85106 NaN NaN NaN NaN NaN NaN NaN 102.67 1 106.17 105.67 106.67 3.5057 0 0 0 0.38417 1 25227 25227 0.50596 0 1 16725 14248 10732 10738 20347 20347 0.16666363404510776 KIRKKREQQ 9 Unmodified _KIRKKREQQ_ 0 0 0 REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|42|2|sense REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|42|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 405.29998779296875 3 405.254439 1212.74149 -0.48667 -0.00019723 0.048045 1.947E-05 -0.43863 -0.00017776 405.25446859466007 25.933 0.14955 29.696 29.614 29.763 3.7624 20 13 2 0 0 0 0.12545 1 3639 3639 0.26902 0.033176 1 38243 + 16726 25548 10733 10739 20348 20348 0.14362681056832116 KIRLMANQN 9 Unmodified _KIRLMANQN_ 0 0 0 L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|80|3|sense L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|80|3|sense L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|80|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 544.8082275390625 2 544.305675 1086.5968 0.47693 0.00025959 0.16379 8.9151E-05 0.64072 0.00034875 544.8083252385336 73.029 0.099609 76.593 76.546 76.646 3.5645 11 8 2 0 0 0 0.46869 1 17144 17144 3.9444 0.66309 1 142530 16727 13473 10734 10740 20349 20349 0.05696296585347227 KIRMNYYMI 9 Unmodified _KIRMNYYMI_ 0 0 0 REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9 REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9 MSMS UPN48_class_I_Rep_3 7 616.3218994140625 2 616.319937 1230.62532 NaN NaN NaN NaN NaN NaN NaN 48.302 1 51.936 51.436 52.436 3.6339 0 0 0 0.38478 1 9574 9574 4.3292 1.8308 1 + 16728 18993 10735 10741 20350 20350 0.019232781702612556 KIRWVWWW 8 Unmodified _KIRWVWWW_ 0 0 0 AluSx1_dup24000|chr4:775479-775801:-|1.0037931111017175|0.4604400438306048|1.12|151.0|5|2|sense AluSx1_dup24000|chr4:775479-775801:-|1.0037931111017175|0.4604400438306048|1.12|151.0|5|2|sense AluSx1_dup24000|chr4:775479-775801:-|1.0037931111017175|0.4604400438306048|1.12|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 630.3446044921875 2 630.345461 1258.67637 NaN NaN NaN NaN NaN NaN NaN 62.996 1 66.166 65.666 66.666 3.1698 0 0 0 0.40625 1 14974 14974 2.3027 0.4585 1 16729 313 10736 10742 20351 20351 0.05737731321642059 KISIAILGY 9 Unmodified _KISIAILGY_ 0 0 0 REV__L1MD1_dup5427|chr14:58417971-58419171:+|1.1525040553464632|0.1587884045686675|2.86|151.0|9|1|sense REV__L1MD1_dup5427|chr14:58417971-58419171:+|1.1525040553464632|0.1587884045686675|2.86|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 489.80621337890625 2 489.305136 976.595718 0.23457 0.00011478 -0.2562 -0.00012536 -0.021632 -1.0585E-05 489.30501135453994 66.522 0.5094 69.974 69.501 70.01 3.4516 61 33 2 0 0 0 0.30034 1 15091 15091 13.906 1.6654 1 231310 + 16730 27356 10737 10743 20352 20352 0.10648405488097978 KISNLENKF 9 Unmodified _KISNLENKF_ 0 0 0 L1PA16_dup877|chr1:246258376-246260324:-|8.232954617420933|0.0641624405681172|7.0|151.0|12|1|sense L1PA16_dup877|chr1:246258376-246260324:-|8.232954617420933|0.0641624405681172|7.0|151.0|12|1|sense L1PA16_dup877|chr1:246258376-246260324:-|8.232954617420933|0.0641624405681172|7.0|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.8063354492188 2 546.806031 1091.59751 -0.19928 -0.00010897 0.2309 0.00012626 0.031617 1.7288E-05 546.8061010240849 29.854 0.73911 33.178 32.741 33.48 3.3235 92 62 2 0 0 0 0.43982 1 4889 4889 5.7319 0 1 78958 16731 14129 10738 10744 20353 20353 0.05537414506034111 KISQSKKDK 9 Unmodified _KISQSKKDK_ 0 0 0 L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|3|1|sense;L1MB2_dup5295|chr10:45988986-45989520:-|1.7357449969686454|0.0480739751559632|5.17|151.0|3|1|sense L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|3|1|sense L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 531.3191528320312 2 531.319306 1060.62406 0.33682 0.00017896 -0.25832 -0.00013725 0.0785 4.1708E-05 531.318923570542 85.922 0.68734 89.528 89.257 89.945 3.6059 141 75 3 0 0 0 0.47197 1 20558 20558 3.5965 0 1 220990 16732 10258 10739 10745 20354 20354 0.0961710339736328 KITKPYTEL 9 Unmodified _KITKPYTEL_ 0 0 0 REV__HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|8|1|sense REV__HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.8005981445312 2 546.818607 1091.62266 0.40584 0.00022192 -0.30007 -0.00016408 0.10577 5.7837E-05 546.8182846877843 64.804 0.33383 68.16 68.018 68.352 3.3557 39 26 2 0 0 0 0.33654 2 15434 15434;15470 11.64 3.7301 1 78519 + 16733 23743 10740 10746 20355;20356 20355 0.08051469308588821 KITKTKRKLHF 11 Unmodified _KITKTKRKLHF_ 0 0 0 REV__AluSc5_dup808|chr2:126663032-126663335:-|1.1151979575945976|0.0272551674779005|5.35|150.0|3|1|sense REV__AluSc5_dup808|chr2:126663032-126663335:-|1.1151979575945976|0.0272551674779005|5.35|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 467.2955017089844 3 467.301389 1398.88234 NaN NaN NaN NaN NaN NaN NaN 83.903 1 87.584 87.084 88.084 3.6814 0 0 0 0.38417 1 19956 19956 1.3296 0.63198 1 + 16734 17090 10741 10747 20357 20357 0.19885259710258651 KITNKKHKHA 10 Unmodified _KITNKKHKHA_ 0 0 0 Tigger17a_dup1117|chr8:73718012-73718689:-|1.007011034603137|0.0102733064306855|6.62|150.0|34|1|anti-sense Tigger17a_dup1117|chr8:73718012-73718689:-|1.007011034603137|0.0102733064306855|6.62|150.0|34|1|anti-sense Tigger17a_dup1117|chr8:73718012-73718689:-|1.007011034603137|0.0102733064306855|6.62|150.0|34|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.8676147460938 2 602.867289 1203.72002 NaN NaN NaN NaN NaN NaN NaN 94.474 1 98.376 97.876 98.876 3.9016 0 0 0 0.53105 1 22386 22386 1.3295 0 1 16735 33249 10742 10748 20358 20358 0.1263129602814388 KITQEEFRL 9 Unmodified _KITQEEFRL_ 0 0 0 L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|27|1|sense L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|27|1|sense L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|27|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.3236694335938 2 582.324588 1162.63462 -0.05123 -2.9832E-05 -0.34287 -0.00019966 -0.3941 -0.0002295 582.3245796434444 35.16 0.092587 38.836 38.788 38.88 3.6762 9 6 2 0 0 0 0.49187 1 6421 6421 1.4819 0.15237 1 31610 16736 9565 10743 10749 20359 20359 0.059810860518155096 KITTVVPVMP 10 Unmodified _KITTVVPVMP_ 0 0 0 REV__ENSG00000130962|ENST00000378628|PRRG1 REV__ENSG00000130962|ENST00000378628|PRRG1 MSMS UPN46_class_I_Rep_3 1 542.3663330078125 2 542.825378 1083.6362 NaN NaN NaN NaN NaN NaN NaN 38.612 1 38.612 38.112 39.112 0 0 0 0 0.53105 1 7364 7364 3.5965 0.31518 1 + 16737 18960 10744 10750 20360 20360 0.09773003816212622 KIVELKQNL 9 Unmodified _KIVELKQNL_ 0 0 0 REV__Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|34|3|sense REV__Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|34|3|sense MSMS UPN47_class_I_Rep_2 3 542.8395385742188 2 542.839874 1083.66519 NaN NaN NaN NaN NaN NaN NaN 43.736 1 47.093 46.593 47.593 3.358 0 0 0 0.38784 1 9051 9051 3.5965 0.60125 1 + 16738 32565 10745 10751 20361 20361 0.12670864436836382 KIVIKNKFLIF 11 Unmodified _KIVIKNKFLIF_ 0 0 0 REV__ENSG00000181381|ENST00000682922|DDX60L REV__ENSG00000181381|ENST00000682922|DDX60L MULTI-SECPEP UPN48_class_I_Rep_2 6 454.27935791015625 3 454.967236 1361.87988 0.11197 5.0941E-05 0.60462 0.00027508 0.71659 0.00032602 454.96734264570335 40.263 0.7297 44.004 43.607 44.337 3.7413 152 78 3 0 0 0 22.551 1 7154 7154 0.08335 0 1 127810 + 16739 20731 10746 10752 20362 20362 0.21341411252569742 KIVMVIYL 8 Unmodified _KIVMVIYL_ 0 0 0 REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|9|1|sense REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 489.8061218261719 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 73.273 1 76.851 76.351 77.351 3.5779 0 0 0 0.40581 1 17198 17198 2.8892 0 1 + 16740 27301 10747 10753 20363 20363 0.10866537621382122 KIVQLEDLY 9 Unmodified _KIVQLEDLY_ 0 0 0 REV__ENSG00000163481|ENST00000295704|RNF25 REV__ENSG00000163481|ENST00000295704|RNF25 MSMS UPN47_class_I_Rep_1 2 560.7982177734375 2 560.816064 1119.61758 NaN NaN NaN NaN NaN NaN NaN 66.412 1 69.77 69.27 70.27 3.3576 0 0 0 0.38639 1 15907 15907 3.9444 0 1 + 16741 19979 10748 10754 20364 20364 0.06255165445986677 KIVQPKRNEAL 11 Unmodified _KIVQPKRNEAL_ 0 0 0 L1MB7_dup15678|chr12:31266871-31267705:-|1.1027674500542837|0.1863724436837977|2.56|151.0|7|1|sense L1MB7_dup15678|chr12:31266871-31267705:-|1.1027674500542837|0.1863724436837977|2.56|151.0|7|1|sense L1MB7_dup15678|chr12:31266871-31267705:-|1.1027674500542837|0.1863724436837977|2.56|151.0|7|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 432.8850402832031 3 432.597983 1294.77212 -0.069568 -3.0095E-05 -1.5912 -0.00068835 -1.6608 -0.00071844 432.59723078278313 101.24 0.13174 104.85 104.81 104.94 3.612 31 18 2 0 0 0 22.551 1 24440 24440 1.4551 0 1 173760 16742 10723 10749 10755 20365 20365 0.13652414651232903 KIVRIKIKQPV 11 Unmodified _KIVRIKIKQPV_ 0 0 0 REV__L1MA9_dup1186|chr2:24521113-24521936:-|3.688339271384923|0.0473691245623867|6.28|151.0|27|3|sense REV__L1MA9_dup1186|chr2:24521113-24521936:-|3.688339271384923|0.0473691245623867|6.28|151.0|27|3|sense MSMS UPN47_class_I_Rep_3 4 441.2970275878906 3 441.306252 1320.89693 NaN NaN NaN NaN NaN NaN NaN 83.495 1 86.845 86.345 87.345 3.35 0 0 0 0.38417 1 20942 20942 0.08335 0 1 + 16743 25596 10750 10756 20366 20366 0.24931331858374506 KIVRNSRR 8 Unmodified _KIVRNSRR_ 0 0 0 nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9;ENST00000424720.2_12:132824120-132905933:-|nuORF nc|ENSG00000182870|Q9HCQ5|GALNT9 nc|ENSG00000182870|Q9HCQ5|GALNT9 MSMS UPN47_class_I_Rep_2 3 514.8265991210938 2 514.825424 1027.63629 NaN NaN NaN NaN NaN NaN NaN 41.443 1 44.808 44.308 45.308 3.3655 0 0 0 0.40501 1 8353 8353 3.9444 0 1 16744 4974 10751 10757 20367 20367 0.12358184651088777 KIVWSLSV 8 Unmodified _KIVWSLSV_ 0 0 0 REV__Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense REV__Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.2837829589844 2 466.284203 930.553853 0.1508 7.0317E-05 0.23773 0.00011085 0.38853 0.00018117 466.2843641751087 59.712 0.32095 59.712 59.441 59.762 0 55 37 2 0 0 0 0.82752 1 13182 13182 20.454 20.454 1 703750 + 16745 32678 10752 10758 20368 20368 0.08579849799571093 KIVWSLSV 8 Unmodified _KIVWSLSV_ 0 0 0 REV__Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense REV__Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.28466796875 2 466.284203 930.553853 0.15165 7.0713E-05 -0.11415 -5.3227E-05 0.0375 1.7486E-05 466.28418531713623 59.815 0.45891 59.815 59.689 60.148 0 102 59 2 0 0 0 0.82752 3 13257 13257;13289;13321 42.095 26.884 1 955940 + 16746 32678 10752 10758 20369;20370;20371 20369 0.08579849799571093 KIWQRYNKK 9 Unmodified _KIWQRYNKK_ 0 0 0 L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|34|2|sense L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|34|2|sense L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 421.9156494140625 3 421.915535 1262.72478 0.020082 8.4731E-06 -0.55814 -0.00023549 -0.53806 -0.00022702 421.91540920306926 38.406 1.0882 42.066 41.546 42.634 3.6595 182 103 3 0 0 0 0.4823 1 6553 6553 2.4985 0 1 260720 16747 14957 10753 10759 20372 20372 0.10392180170856591 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5 ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENST00000454085.2_1_15:28141134-28141371:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.785400390625 2 532.784764 1063.55498 0.31479 0.00016772 -0.13855 -7.3817E-05 0.17624 9.3899E-05 532.7845887250066 43.972 0.73051 43.972 43.604 44.334 0 107 66 2 0 0 0 0.17979 3 8766 8766;8813;8850 22.658 6.509 1 409860 16748 2385 10754 10760 20373;20374;20375 20373 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5 ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENST00000454085.2_1_15:28141134-28141371:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 532.7848510742188 2 532.784764 1063.55498 -0.052653 -2.8052E-05 0.17872 9.5221E-05 0.12607 6.7169E-05 532.7847845719172 39.239 1.2568 42.904 42.545 43.801 3.6652 234 89 4 0 0 0 0.0078401 5 7654 7611;7654;7693;7730;7770 96.367 29.91 1 1235700 16749 2385 10754 10760 20376;20377;20378;20379;20380 20377 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5 ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENST00000454085.2_1_15:28141134-28141371:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 532.7847900390625 2 532.784764 1063.55498 -0.090235 -4.8076E-05 0.1868 9.9524E-05 0.096565 5.1448E-05 532.7847926357603 39.61 1.3002 42.988 42.565 43.865 3.3785 219 81 4 0 0 0 0.0070571 7 7794 7757;7794;7832;7875;7914;7953;7995 86.332 19.875 1 1022000 16750 2385 10754 10760 20381;20382;20383;20384;20385;20386;20387 20382 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5 ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENST00000454085.2_1_15:28141134-28141371:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 532.7847900390625 2 532.784764 1063.55498 -0.080162 -4.2709E-05 0.14339 7.6397E-05 0.063229 3.3688E-05 532.7847631126934 39.738 1.3698 42.976 42.593 43.963 3.2379 218 90 3 0 0 0 0.019142 5 7891 7853;7891;7932;8008;8082 63.961 18.261 1 1007400 16751 2385 10754 10760 20388;20389;20390;20391;20392 20389 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5 ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENST00000454085.2_1_15:28141134-28141371:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 532.784764 1063.55498 -0.096399 -5.136E-05 0.38957 0.00020756 0.29318 0.0001562 532.7845259217053 40.546 0.11271 43.918 43.858 43.971 3.3712 -0.058054 0.0005403 NaN 22.658 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 38231 16752 2385 10754 10760 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5 ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENST00000454085.2_1_15:28141134-28141371:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 532.784764 1063.55498 -0.043604 -2.3231E-05 0.063891 3.404E-05 0.020287 1.0809E-05 532.7841828555279 40.8 0.18871 44.037 43.962 44.151 3.2372 0.061615 0.00019326 NaN 22.658 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 48779 16753 2385 10754 10760 0.025740193778119647 KIYKQRSP 8 Unmodified _KIYKQRSP_ 0 0 0 nc|ENSG00000188848|Q6ZU67-5|BEND4;nc|ENSG00000188848|Q6ZU67-4|BEND4;nc|ENSG00000188848|Q6ZU67-2|BEND4;ENSG00000188848|ENST00000502486|BEND4 nc|ENSG00000188848|Q6ZU67-5|BEND4 nc|ENSG00000188848|Q6ZU67-5|BEND4 MULTI-MSMS UPN48_class_I_Rep_1 5 510.3031921386719 2 510.303458 1018.59236 0.22718 0.00011593 0.096782 4.9388E-05 0.32397 0.00016532 510.3033842696336 107.84 0.39223 111.47 111.38 111.77 3.6313 80 33 4 0 0 0 0.82752 1 26003 26003 7.2892 0 1 100310000 16754 5259 10755 10761 20393 20393 0.08381155434096854 KIYSFLFPCP 10 Unmodified _KIYSFLFPCP_ 0 0 0 L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|30|2|anti-sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|30|2|anti-sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|30|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 405.74505615234375 3 405.547461 1213.62055 -0.040292 -1.634E-05 -0.28309 -0.00011481 -0.32338 -0.00013115 405.8817465362255 22.839 0.27561 26.399 26.215 26.49 3.5605 50 33 2 0 0 0 0.84575 1 2281 2281 1.9064 0.1641 1 40112 16755 12569 10756 10762 20394 20394 0.022287172991582338 KIYSFLFPCP 10 Unmodified _KIYSFLFPCP_ 0 0 0 L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|30|2|anti-sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|30|2|anti-sense L1ME2z_dup5108|chr13:79390249-79390809:+|1.1528932432385692|0.0203176536007004|5.83|151.0|30|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 405.2995300292969 3 405.547461 1213.62055 0.14061 5.7023E-05 -0.42413 -0.000172 -0.28352 -0.00011498 405.5472426238252 22.826 0.28082 26.469 26.384 26.665 3.6432 42 33 2 0 0 0 0.84575 1 2397 2397 1.7423 1.7423 1 53240 16756 12569 10756 10762 20395 20395 0.022287172991582338 KKAALTSAL 9 Unmodified _KKAALTSAL_ 0 0 0 nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;ENSG00000173898.14,SPTBN2,chr11,-,I29.1,66690359,66691283|23|3.4|2|intron nc|ENSG00000173898|O15020-2|SPTBN2 nc|ENSG00000173898|O15020-2|SPTBN2 MSMS UPN47_class_I_Rep_2 3 451.7871398925781 2 451.78711 901.559667 NaN NaN NaN NaN NaN NaN NaN 24.803 1 28.286 27.786 28.786 3.483 0 0 0 0.39598 1 3347 3347 1.6526 0.85899 1 16757 4653 10757 10763 20396 20396 0.10494948311202279 KKAERWETNV 10 Unmodified _KKAERWETNV_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 421.22900390625 3 420.894688 1259.66223 -0.38337 -0.00016136 0.38204 0.0001608 -0.0013339 -5.6143E-07 420.89474146533166 91.645 0.34202 95.107 94.92 95.262 3.4613 57 51 2 0 0 0 0.55583 1 22676 22676 4.7159 0.87001 1 1275100 + 16758 26824 10758 10764 20397 20397 0.04278989312047088 KKAERWETNV 10 Unmodified _KKAERWETNV_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 420.8948669433594 3 420.894688 1259.66223 -0.11965 -5.0361E-05 0.16595 6.9848E-05 0.046299 1.9487E-05 420.8947042791276 91.398 0.48289 95.024 94.818 95.3 3.626 131 72 2 0 0 0 0.53513 1 22008 22008 7.4771 2.0744 1 7411300 + 16759 26824 10758 10764 20398 20398 0.04278989312047088 KKAERWETNV 10 Unmodified _KKAERWETNV_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 421.229248046875 3 420.894688 1259.66223 0.1184 4.9834E-05 -0.25927 -0.00010913 -0.14087 -5.9292E-05 420.89455044550186 91.22 0.58496 95.084 94.831 95.416 3.8634 180 87 3 0 0 0 0.50947 2 21595 21595;21625 10.899 2.4547 1 5649200 + 16760 26824 10758 10764 20399;20400 20399 0.04278989312047088 KKAERWETNV 10 Unmodified _KKAERWETNV_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 420.894688 1259.66223 -0.11895 -5.0065E-05 0.12295 5.1749E-05 0.0039998 1.6835E-06 420.8946565717261 91.09 0.02153 94.716 94.704 94.726 3.626 -0.18374 0.00047052 NaN 10.899 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 73909 + 16761 26824 10758 10764 0.04278989312047088 KKAERWETNV 10 Unmodified _KKAERWETNV_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 420.894688 1259.66223 0.082144 3.4574E-05 0.11495 4.8382E-05 0.19709 8.2955E-05 420.8946417142962 91.552 0.078987 95.308 95.285 95.364 3.7554 -0.019534 1.0905E-05 NaN 4.7159 11 10 2 NaN NaN NaN NaN 0 NaN NaN 0 538530 + 16762 26824 10758 10764 0.04278989312047088 KKAERWETNV 10 Unmodified _KKAERWETNV_ 0 0 0 REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense REV__L1MC4_dup15456|chr10:58258950-58259460:+|1.2037411213126017|0.0265915735489032|5.5|151.0|8|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 420.894688 1259.66223 0.11757 4.9485E-05 -1.2644 -0.00053217 -1.1468 -0.00048269 421.2283186746287 91.596 0.04332 95.46 95.439 95.482 3.8634 0.13248 -0.0017308 NaN 4.7159 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 365640 + 16763 26824 10758 10764 0.04278989312047088 KKAIKVFH 8 Unmodified _KKAIKVFH_ 0 0 0 REV__nc|ENSG00000136828|Q5JS13-5|RALGPS1 REV__nc|ENSG00000136828|Q5JS13-5|RALGPS1 MSMS UPN47_class_I_Rep_2 3 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 42.731 1 46.092 45.592 46.592 3.3611 0 0 0 0.40738 1 8744 8744 0.79363 0 1 + 16764 19203 10759 10765 20401 20401 0.12634951164693575 KKAIKVFH 8 Unmodified _KKAIKVFH_ 0 0 0 REV__nc|ENSG00000136828|Q5JS13-5|RALGPS1 REV__nc|ENSG00000136828|Q5JS13-5|RALGPS1 MSMS UPN47_class_I_Rep_3 4 485.8115539550781 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 67.197 1 70.389 69.889 70.889 3.1914 0 0 0 0.40738 1 16256 16256 0.79363 0 1 + 16765 19203 10759 10765 20402 20402 0.12634951164693575 KKAIKVFH 8 Unmodified _KKAIKVFH_ 0 0 0 REV__nc|ENSG00000136828|Q5JS13-5|RALGPS1 REV__nc|ENSG00000136828|Q5JS13-5|RALGPS1 MSMS UPN48_class_I_Rep_3 7 485.8122253417969 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 78.838 1 82.46 81.96 82.96 3.6216 0 0 0 0.40738 1 18678 18678 0.79363 0 1 + 16766 19203 10759 10765 20403 20403 0.12634951164693575 KKAKKIMP 8 Unmodified _KKAKKIMP_ 0 0 0 REV__nc|ENSG00000167074|Q10587-2|TEF REV__nc|ENSG00000167074|Q10587-2|TEF MSMS UPN47_class_I_Rep_3 4 472.31170654296875 2 472.309698 942.604843 NaN NaN NaN NaN NaN NaN NaN 96.554 1 99.968 99.468 100.47 3.414 0 0 0 0.40738 1 23946 23946 0.79363 0 1 + 16767 20205 10760 10766 20404 20404 0.13124475572772099 KKAKQKYW 8 Unmodified _KKAKQKYW_ 0 0 0 REV__nc|ENSG00000211710|A0A577|TRBV4-1 REV__nc|ENSG00000211710|A0A577|TRBV4-1 MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 33.214 1 33.214 32.714 33.714 0 0 0 0 0.40746 1 5782 5782 0.69038 0 1 + 16768 32100 10761 10767 20405 20405 0.09258032330808419 KKALEQLNGF 10 Unmodified _KKALEQLNGF_ 0 0 0 ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENSG00000131051.24,RBM39,chr20,-,I16.1,35710567,35713018|30|77.61|1|intron;ENSG00000131051.24,RBM39,chr20,-,I16.1,35710567,35713018|30|77.61|2|intron;nc|ENSG00000131051|Q14498-2|RBM39 ENST00000492779.5_1_20:34292405-34320086:-|nuORF ENST00000492779.5_1_20:34292405-34320086:-|nuORF MSMS UPN47_class_I_Rep_3 4 574.326904296875 2 574.327131 1146.63971 NaN NaN NaN NaN NaN NaN NaN 66.539 1 69.724 69.224 70.224 3.1853 0 0 0 0.53105 1 16055 16055 4.897 0.56777 1 16769 2697 10762 10768 20406 20406 0.07225389914401603 KKARLKKP 8 Unmodified _KKARLKKP_ 0 0 0 ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2 ENSG00000057019|ENST00000326840|DCBLD2 ENSG00000057019|ENST00000326840|DCBLD2 MULTI-MSMS UPN47_class_I_Rep_3 4 484.8399353027344 2 484.840011 967.665469 0.19807 9.6032E-05 -0.11419 -5.5364E-05 0.08388 4.0668E-05 484.83987998185444 108.26 0.65044 111.8 111.22 111.87 3.5382 140 74 4 0 0 0 0.82752 1 26454 26454 2.5775 0.27475 1 35719000 16770 950 10763 10769 20407 20407 0.1803432894735124 KKARSHIK 8 Unmodified _KKARSHIK_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|112|3|sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|112|3|sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|112|3|sense MSMS UPN48_class_I_Rep_3 7 484.767578125 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 93.255 1 97.146 96.646 97.646 3.8914 0 0 0 0.40746 1 22095 22095 0.69038 0 1 16771 14103 10764 10770 20408 20408 0.12404281390831784 KKAYKKAK 8 Unmodified _KKAYKKAK_ 0 0 0 nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50 nc|ENSG00000152492|Q8IVM0|CCDC50 nc|ENSG00000152492|Q8IVM0|CCDC50 MSMS UPN47_class_I_Rep_2 3 482.8179626464844 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 26.547 1 30.042 29.542 30.542 3.4945 0 0 0 0.40746 1 3858 3858 0.69038 0 1 16772 3621 10765 10771 20409 20409 0.1396693381911973 KKAYSVVW 8 Unmodified _KKAYSVVW_ 0 0 0 L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|256|3|anti-sense L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|256|3|anti-sense L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|256|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7817077636719 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 28.946 1 32.704 32.204 33.204 3.7578 0 0 0 0.40604 1 4528 4528 2.5775 0 1 16773 15411 10766 10772 20410 20410 0.05850965656804874 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.3144226074219 2 489.314449 976.614345 0.21769 0.00010652 -0.22948 -0.00011229 -0.011789 -5.7684E-06 489.3142803479878 86.298 0.6903 89.914 89.572 90.262 3.6153 179 86 3 0 0 0 0.82752 1 21558 21558 0.79363 0 1 2740500 + 16774 17357 10767 10773 20411 20411 0.1251024385829851 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 489.3144836425781 2 489.314449 976.614345 0.21769 0.00010652 -0.22948 -0.00011229 -0.011789 -5.7684E-06 489.3142803479878 86.298 0.6903 89.914 89.572 90.262 3.6153 179 86 3 0 0 0 0.72333 1 21600 21600 0.79363 0 1 2740500 + 16775 17357 10767 10773 20412 20412 0.1251024385829851 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 489.314453125 2 489.314449 976.614345 0.22583 0.0001105 -0.25895 -0.00012671 -0.03312 -1.6206E-05 489.3142633233296 86.247 0.61843 89.619 89.435 90.053 3.3716 164 77 3 0 0 0 0.82752 1 21630 21630 0.79363 0.79363 1 1329900 + 16776 17357 10767 10773 20413 20413 0.1251024385829851 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 489.3143310546875 2 489.314449 976.614345 0.16332 7.9916E-05 -0.23789 -0.0001164 -0.074569 -3.6488E-05 489.31425185035243 86.049 0.76283 89.662 89.289 90.051 3.613 221 86 3 0 0 0 0.82752 1 20560 20560 0.79363 0 1 1034000 + 16777 17357 10767 10773 20414 20414 0.1251024385829851 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 489.31439208984375 2 489.314449 976.614345 0.25869 0.00012658 -0.3337 -0.00016328 -0.075009 -3.6703E-05 489.3142705712154 86.346 0.20393 90.063 90.002 90.205 3.7171 39 28 2 0 0 0 0.82752 1 20562 20562 0.79363 0 1 342700 + 16778 17357 10767 10773 20415 20415 0.1251024385829851 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 489.314449 976.614345 0.29223 0.00014299 -0.52578 -0.00025727 -0.23355 -0.00011428 489.31422013236136 89.943 0.13516 89.943 89.885 90.02 0 0.10318 -0.00027422 NaN 0.79363 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2115800 + 16779 17357 10767 10773 0.1251024385829851 KKCFLLLL 8 Unmodified _KKCFLLLL_ 0 0 0 REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense REV__Charlie1b_dup2245|chr12:57385785-57386129:+|1.523256898527929|0.0050308235926537|8.24|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 489.314449 976.614345 0.25869 0.00012658 -0.3337 -0.00016328 -0.075009 -3.6703E-05 489.3142705712154 86.346 0.20393 90.063 90.002 90.205 3.7171 0.22288 -8.6249E-05 NaN 0.79363 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 342700 + 16780 17357 10767 10773 0.1251024385829851 KKCKYGLLAIE 11 Unmodified _KKCKYGLLAIE_ 0 0 0 REV__ENST00000568850.5_1_15:66084794-66143245:+|nuORF REV__ENST00000568850.5_1_15:66084794-66143245:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 633.3670654296875 2 633.367941 1264.72133 0.59238 0.00037519 1.0957 0.00069399 1.6881 0.0010692 633.8707403394134 89.655 0.35255 93.112 93.063 93.415 3.4571 75 49 2 0 0 0 0.65674 1 22287 22287 2.9952 1.5133 1 189970 + 16781 23080 10768 10774 20416 20416 0.09955749282016768 KKCLPRRRL 9 Unmodified _KKCLPRRRL_ 0 0 0 ENST00000520987.1_1_8:101149771-101157363:-|nuORF;ENSG00000156509|ENST00000428847|FBXO43 ENST00000520987.1_1_8:101149771-101157363:-|nuORF ENST00000520987.1_1_8:101149771-101157363:-|nuORF MSMS UPN48_class_I_Rep_3 7 585.3743286132812 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 24.769 1 28.538 28.038 29.038 3.769 0 0 0 0.4007 1 2916 2916 0.52476 0 1 16782 3733 10769 10775 20417 20417 0.1562825025557686 KKCLSAPAI 9 Unmodified _KKCLSAPAI_ 0 0 0 nc|ENSG00000099810|Q13126-5|MTAP;nc|ENSG00000099810|Q13126-2|MTAP nc|ENSG00000099810|Q13126-5|MTAP nc|ENSG00000099810|Q13126-5|MTAP MSMS UPN47_class_I_Rep_1 2 465.7773132324219 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 73.587 1 76.974 76.474 77.474 3.3861 0 0 0 0.39428 1 18075 18075 2.0598 1.2661 1 16783 16646 10770 10776 20418 20418 0.06923605922088427 KKCLSAPAI 9 Unmodified _KKCLSAPAI_ 0 0 0 nc|ENSG00000099810|Q13126-5|MTAP;nc|ENSG00000099810|Q13126-2|MTAP nc|ENSG00000099810|Q13126-5|MTAP nc|ENSG00000099810|Q13126-5|MTAP MSMS UPN48_class_I_Rep_2 6 465.7773132324219 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 72.987 1 76.552 76.052 77.052 3.5645 0 0 0 0.38639 1 17116 17116 3.9444 1.0552 1 16784 16646 10770 10776 20419 20419 0.06923605922088427 KKCPVSLVT 9 Unmodified _KKCPVSLVT_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MSMS UPN46_class_I_Rep_3 1 487.7916259765625 2 487.788795 973.563038 NaN NaN NaN NaN NaN NaN NaN 77.729 1 77.729 77.229 78.229 0 0 0 0 0.39518 1 18181 18181 1.8442 0 1 16785 2168 10771 10777 20420 20420 0.0751987509358969 KKCVHIDI 8 Unmodified _KKCVHIDI_ 0 0 0 L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|38|2|sense L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|38|2|sense L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|38|2|sense MSMS UPN48_class_I_Rep_3 7 478.7444763183594 2 478.273312 954.532072 NaN NaN NaN NaN NaN NaN NaN 34.788 1 38.46 37.96 38.96 3.6721 0 0 0 0.40746 1 5563 5563 0.69038 0 1 16786 15335 10772 10778 20421 20421 0.05298721779342941 KKCVKKMNK 9 Unmodified _KKCVKKMNK_ 0 0 0 ENSG00000255009|ENST00000530464|UBTFL1 ENSG00000255009|ENST00000530464|UBTFL1 ENSG00000255009|ENST00000530464|UBTFL1 MULTI-MSMS UPN46_class_I_Rep_3 1 553.8294677734375 2 553.830472 1105.64639 0.41284 0.00022864 -0.80986 -0.00044852 -0.39702 -0.00021988 553.8298929103887 85.415 0.17356 85.415 85.271 85.444 0 36 15 4 0 0 0 0.48846 2 20342 20342;20346 1.8442 1.8442 1 583510 16787 5761 10773 10779 20422;20423 20422 0.09779288269783137 KKCVKKMNK 9 Unmodified _KKCVKKMNK_ 0 0 0 ENSG00000255009|ENST00000530464|UBTFL1 ENSG00000255009|ENST00000530464|UBTFL1 ENSG00000255009|ENST00000530464|UBTFL1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 553.830472 1105.64639 0.51581 0.00028567 -0.91412 -0.00050627 -0.39831 -0.0002206 553.8298259149702 81.909 0.27847 85.293 85.244 85.523 3.3839 -0.094716 -2.1833E-05 NaN 1.8442 45 32 2 NaN NaN NaN NaN 0 NaN NaN 0 161440 16788 5761 10773 10779 0.09779288269783137 KKDAPVIQLPP 11 Unmodified _KKDAPVIQLPP_ 0 0 0 THE1A_dup1153|chr4:78868110-78868448:-|1.425233570331578|0.2880532841248839|2.31|151.0|16|2|anti-sense THE1A_dup1153|chr4:78868110-78868448:-|1.425233570331578|0.2880532841248839|2.31|151.0|16|2|anti-sense THE1A_dup1153|chr4:78868110-78868448:-|1.425233570331578|0.2880532841248839|2.31|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 603.3679809570312 2 603.366256 1204.71796 NaN NaN NaN NaN NaN NaN NaN 73.203 1 76.589 76.089 77.089 3.3861 0 0 0 0.38417 1 17961 17961 1.3295 0.72803 1 16789 32859 10774 10780 20424 20424 0.12378822499658781 KKDEYEFF 8 Unmodified _KKDEYEFF_ 0 0 0 ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH ENST00000549111.5_1_12:103248818-103310977:-|nuORF ENST00000549111.5_1_12:103248818-103310977:-|nuORF MSMS UPN48_class_I_Rep_2 6 553.2639770507812 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 68.201 1 71.71 71.21 72.21 3.5083 0 0 0 0.40404 1 15714 15714 5.2307 0.47466 1 16790 4544 10775 10781 20425 20425 -0.03529956030570247 KKDKEHCI 8 Unmodified _KKDKEHCI_ 0 0 0 L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|1|1|sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|1|1|sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 500.76556396484375 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 44.366 1 48.061 47.561 48.561 3.6951 0 0 0 0.40643 1 9217 9217 2.0598 0.21551 1 16791 13884 10776 10782 20426 20426 0.017372299113503686 KKDKEHHY 8 Unmodified _KKDKEHHY_ 0 0 0 L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|113|3|sense L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|113|3|sense L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|113|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 542.2799072265625 2 542.780348 1083.54614 0.43098 0.00023393 0.99996 0.00054276 1.4309 0.00077668 542.7810200669268 78.242 0.075523 81.764 81.722 81.798 3.5221 11 9 2 0 0 0 0.72333 1 18659 18659 0 0 1 59167 16792 9777 10777 10783 20427 20427 0.0077109053199819755 KKDKLLPN 8 Unmodified _KKDKLLPN_ 0 0 0 L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|75|2|sense L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|75|2|sense L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|75|2|sense MSMS UPN47_class_I_Rep_2 3 478.300048828125 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 28.838 1 32.336 31.836 32.836 3.4986 0 0 0 0.40746 1 4532 4532 0.69038 0 1 16793 13509 10778 10784 20428 20428 0.10710637202566886 KKDKRPPI 8 Unmodified _KKDKRPPI_ 0 0 0 nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1 nc|ENSG00000048649|Q96T23-3|RSF1 nc|ENSG00000048649|Q96T23-3|RSF1 MULTI-MSMS UPN47_class_I_Rep_1 2 491.3139953613281 2 491.313826 980.613099 -0.31931 -0.00015688 0.33677 0.00016546 0.017461 8.5787E-06 491.3139001186543 23.784 1.0582 27.513 27.128 28.186 3.7298 180 88 3 0 0 0 0.82752 1 3195 3195 2.0598 0 1 331450 16794 896 10779 10785 20429 20429 0.12201745813740672 KKDKVLLSY 9 Unmodified _KKDKVLLSY_ 0 0 0 nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33 nc|ENSG00000137033|O95760-3|IL33 nc|ENSG00000137033|O95760-3|IL33 MSMS UPN47_class_I_Rep_1 2 547.3331298828125 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 93.383 1 97.119 96.619 97.619 3.736 0 0 0 0.40098 1 23233 23233 0.45834 0.057624 1 16795 3004 10780 10786 20430 20430 0.11167462062576305 KKDKVPVVS 9 Unmodified _KKDKVPVVS_ 0 0 0 REV__nc|ENSG00000241468|P56134-4|ATP5MF REV__nc|ENSG00000241468|P56134-4|ATP5MF MSMS UPN47_class_I_Rep_1 2 500.3140869140625 2 500.313492 998.612431 NaN NaN NaN NaN NaN NaN NaN 63.929 1 67.285 66.785 67.785 3.3557 0 0 0 0.37692 1 15159 15159 6.2058 0 1 + 16796 22597 10781 10787 20431 20431 0.11306906374045411 KKDKYFGI 8 Unmodified _KKDKYFGI_ 0 0 0 L1MB2_dup1622|chr3:149941920-149943213:-|1.775284609021767|0.0662455982284518|4.74|150.0|41|3|sense L1MB2_dup1622|chr3:149941920-149943213:-|1.775284609021767|0.0662455982284518|4.74|150.0|41|3|sense L1MB2_dup1622|chr3:149941920-149943213:-|1.775284609021767|0.0662455982284518|4.74|150.0|41|3|sense MSMS UPN48_class_I_Rep_1 5 499.7862243652344 2 499.78711 997.559667 NaN NaN NaN NaN NaN NaN NaN 35.048 1 38.563 38.063 39.063 3.5144 0 0 0 0.40738 1 5684 5684 0.79363 0 1 16797 10216 10782 10788 20432 20432 0.06078948311221666 KKDWWKDE 8 Unmodified _KKDWWKDE_ 0 0 0 REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF MSMS UPN47_class_I_Rep_2 3 567.7806396484375 2 567.782556 1133.55056 NaN NaN NaN NaN NaN NaN NaN 36.91 1 40.308 39.808 40.808 3.3988 0 0 0 0.40625 1 6978 6978 2.3027 0 1 + 16798 22368 10783 10789 20433 20433 -0.010874450451183293 KKEAFAKTTK 10 Unmodified _KKEAFAKTTK_ 0 0 0 ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA MSMS UPN48_class_I_Rep_3 7 576.3431396484375 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 110.5 1 114.17 113.67 114.67 3.67 0 0 0 0.53105 1 26220 26220 1.3295 0 1 16799 1861 10784 10790 20434 20434 0.10169962948498323 KKEDEMRPQ 9 Unmodified _KKEDEMRPQ_ 0 0 0 HAL1ME_dup818|chr2:68201486-68202183:-|2.553390467154571|0.050651565378861|5.66|151.0|30|3|sense HAL1ME_dup818|chr2:68201486-68202183:-|2.553390467154571|0.050651565378861|5.66|151.0|30|3|sense HAL1ME_dup818|chr2:68201486-68202183:-|2.553390467154571|0.050651565378861|5.66|151.0|30|3|sense MSMS UPN47_class_I_Rep_2 3 580.7897338867188 2 580.790055 1159.56556 NaN NaN NaN NaN NaN NaN NaN 30.243 1 33.725 33.225 34.225 3.4821 0 0 0 0.39428 1 4957 4957 2.0598 0 1 16800 7964 10785 10791 20435 20435 -0.007843212394163857 KKEEDKKK 8 Unmodified _KKEEDKKK_ 0 0 0 HAL1_dup6237|chr4:83095010-83095748:+|1.980681188347708|0.0295091737058124|6.07|151.0|13|2|sense HAL1_dup6237|chr4:83095010-83095748:+|1.980681188347708|0.0295091737058124|6.07|151.0|13|2|sense HAL1_dup6237|chr4:83095010-83095748:+|1.980681188347708|0.0295091737058124|6.07|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 516.8614501953125 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 87.857 1 87.857 87.357 88.357 0 0 0 0 0.40746 1 21074 21074 0.69038 0 1 16801 7900 10786 10792 20436 20436 0.08297414506046152 KKEEEFFY 8 Unmodified _KKEEEFFY_ 0 0 0 REV__L1MB7_dup2278|chr2:63170860-63172212:+|2.071553262288551|0.2287940202283112|3.18|151.0|65|1|anti-sense REV__L1MB7_dup2278|chr2:63170860-63172212:+|2.071553262288551|0.2287940202283112|3.18|151.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.2683715820312 2 560.27149 1118.52843 0.36939 0.00020696 -0.17265 -9.673E-05 0.19674 0.00011023 560.7729819883875 70.594 0.60712 73.966 73.715 74.323 3.3713 96 55 2 0 0 0 0.82752 1 17249 17249 12.532 1.7076 1 188280 + 16802 26235 10787 10793 20437 20437 -0.026096695135038317 KKELKGVY 8 Unmodified _KKELKGVY_ 0 0 0 L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|91|2|sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|91|2|sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|91|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 482.2536926269531 2 482.794935 963.575317 0.011745 5.6705E-06 1.4721 0.0007107 1.4838 0.00071637 482.79534466352254 29.947 0.099203 29.947 29.875 29.974 0 10 9 2 0 0 0 0.72333 1 4810 4810 7.9102 2.6795 1 158150 16803 13708 10788 10794 20438 20438 0.09207234828284072 KKELVKLI 8 Unmodified _KKELVKLI_ 0 0 0 REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|35|2|sense REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.8373718261719 2 485.836603 969.658653 -0.47874 -0.00023259 0.26021 0.00012642 -0.21853 -0.00010617 485.83667828721474 30.293 0.7796 33.605 33.158 33.937 3.3116 94 63 2 0 0 0 0.82752 1 4952 4952 0.69038 0 1 69718 + 16804 17628 10789 10795 20439 20439 0.1726097127615276 KKEPQIAK 8 Unmodified _KKEPQIAK_ 0 0 0 L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|19|2|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|19|2|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 471.2946472167969 2 471.292559 940.570566 NaN NaN NaN NaN NaN NaN NaN 47.144 1 50.78 50.28 51.28 3.6363 0 0 0 0.40659 1 9223 9223 1.8442 1.0506 1 16805 14029 10790 10796 20440 20440 0.09790350685523208 KKERETFF 8 Unmodified _KKERETFF_ 0 0 0 REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|56|1|sense REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|56|1|sense MSMS UPN47_class_I_Rep_3 4 542.7655639648438 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 36.404 1 39.659 39.159 40.159 3.2547 0 0 0 0.40604 1 6860 6860 2.5775 0 1 + 16806 24922 10791 10797 20441 20441 0.032851453345756454 KKERHLLGWP 10 Unmodified _KKERHLLGWP_ 0 0 0 ENST00000538795.1_1:150521930-150522471:+|nuORF ENST00000538795.1_1:150521930-150522471:+|nuORF ENST00000538795.1_1:150521930-150522471:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 421.9153747558594 3 421.915535 1262.72478 -0.085647 -3.6136E-05 -0.58981 -0.00024885 -0.67546 -0.00028499 421.91546986976607 38.731 1.0222 42.236 41.693 42.715 3.5048 161 86 2 0 0 0 0.56107 1 6788 6788 3.0723 0.33707 1 365970 16807 7343 10792 10798 20442 20442 0.10392180170902066 KKERHLLGWP 10 Unmodified _KKERHLLGWP_ 0 0 0 ENST00000538795.1_1:150521930-150522471:+|nuORF ENST00000538795.1_1:150521930-150522471:+|nuORF ENST00000538795.1_1:150521930-150522471:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 421.9153137207031 3 421.915535 1262.72478 0.042056 1.7744E-05 -0.41317 -0.00017432 -0.37112 -0.00015658 421.91540663942044 38.242 1.0885 41.959 41.468 42.557 3.7164 188 107 3 0 0 0 0.56107 2 6586 6586;6638 3.0723 0.57378 1 359370 16808 7343 10792 10798 20443;20444 20443 0.10392180170902066 KKERHLLGWP 10 Unmodified _KKERHLLGWP_ 0 0 0 ENST00000538795.1_1:150521930-150522471:+|nuORF ENST00000538795.1_1:150521930-150522471:+|nuORF ENST00000538795.1_1:150521930-150522471:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 421.9154357910156 3 421.915535 1262.72478 0.020082 8.4731E-06 -0.55814 -0.00023549 -0.53806 -0.00022702 421.91540920306926 38.406 1.0882 42.066 41.546 42.634 3.6595 182 103 3 0 0 0 0.56107 2 6588 6588;6623 3.0723 0.57378 1 260720 16809 7343 10792 10798 20445;20446 20445 0.10392180170902066 KKERHNTILI 10 Unmodified _KKERHNTILI_ 0 0 0 REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 626.3792724609375 2 626.380229 1250.7459 0.42773 0.00026792 -1.2324 -0.00077193 -0.80464 -0.00050401 626.3795014122187 98.875 0.42429 102.48 102.45 102.87 3.6065 77 54 2 0 0 0 0.5614 1 23871 23871 5.2969 3.9674 1 585760 + 16810 22007 10793 10799 20447 20447 0.13056145479754377 KKERHNTILI 10 Unmodified _KKERHNTILI_ 0 0 0 REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 626.3798828125 2 626.380229 1250.7459 0.60023 0.00037598 -0.9176 -0.00057477 -0.31737 -0.00019879 626.3797540129832 98.409 0.81717 102.31 102.18 103 3.9022 179 116 3 0 0 0 0.56444 1 23423 23423 0.40072 0 1 2643600 + 16811 22007 10793 10799 20448 20448 0.13056145479754377 KKERKKKDMQP 11 Unmodified _KKERKKKDMQP_ 0 0 0 L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.94390869140625 3 472.609894 1414.80785 0.12059 5.699E-05 -0.006845 -3.235E-06 0.11374 5.3755E-05 472.60983026521353 40.854 0.57783 44.505 44.042 44.62 3.6509 79 54 2 0 0 0 0.68024 1 7342 7342 0.50596 0 1 137750 16812 13418 10794 10800 20449 20449 0.11704128836572636 KKERKKKDMQP 11 Unmodified _KKERKKKDMQP_ 0 0 0 L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 472.609894 1414.80785 0.15675 7.4084E-05 -0.054223 -2.5626E-05 0.10253 4.8457E-05 472.6098226340185 40.819 0.12282 44.57 44.527 44.65 3.7508 -0.031764 -1.7715E-05 NaN 0.50596 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 91597 16813 13418 10794 10800 0.11704128836572636 KKERKLHLRAR 11 Unmodified _KKERKLHLRAR_ 0 0 0 REV__AluSx1_dup2997|chr1:40380530-40380828:-|1.0162572148704598|0.0481319336441916|4.4|151.0|12|3|sense REV__AluSx1_dup2997|chr1:40380530-40380828:-|1.0162572148704598|0.0481319336441916|4.4|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9747619628906 3 478.975788 1433.90553 0.11088 5.3107E-05 -1.7128 -0.00082037 -1.6019 -0.00076727 478.974741100274 102.87 0.061691 106.49 106.47 106.53 3.6164 10 8 2 0 0 0 0.68081 1 24799 24799 0.45452 0 1 237490 + 16814 17173 10795 10801 20450 20450 0.2059369854760007 KKERKLHLRAR 11 Unmodified _KKERKLHLRAR_ 0 0 0 REV__AluSx1_dup2997|chr1:40380530-40380828:-|1.0162572148704598|0.0481319336441916|4.4|151.0|12|3|sense REV__AluSx1_dup2997|chr1:40380530-40380828:-|1.0162572148704598|0.0481319336441916|4.4|151.0|12|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 478.975788 1433.90553 0.2311 0.00011069 -2.3443 -0.0011229 -2.1132 -0.0010122 478.9749600652724 102.91 0.033646 106.62 106.61 106.64 3.7108 0.066507 -0.00061441 NaN 0.45452 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 34231 + 16815 17173 10795 10801 0.2059369854760007 KKESGPLLAL 10 Unmodified _KKESGPLLAL_ 0 0 0 REV__ENST00000553205.1_1_12:112843569-112844143:-|nuORF REV__ENST00000553205.1_1_12:112843569-112844143:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.3267211914062 2 528.326599 1054.63865 0.35832 0.00018931 0.024681 1.304E-05 0.383 0.00020235 528.3265720237328 60.672 0.15456 64.053 63.976 64.131 3.3815 16 13 2 0 0 0 0.53004 1 14168 14168 8.1555 0.54658 1 74668 + 16816 22974 10796 10802 20451 20451 0.11351175545519254 KKESQQRN 8 Unmodified _KKESQQRN_ 0 0 0 L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|5|1|sense;L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|109|3|sense;L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|163|3|sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|5|1|sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 509.2737731933594 2 509.275429 1016.53631 NaN NaN NaN NaN NaN NaN NaN 107.17 1 110.84 110.34 111.34 3.6724 0 0 0 0.40625 1 26252 26252 2.3027 0.4585 1 16817 12101 10797 10803 20452 20452 0.02869902526617807 KKEVRIWW 8 Unmodified _KKEVRIWW_ 0 0 0 ENST00000460904.1_1_2:27259408-27260666:+|nuORF ENST00000460904.1_1_2:27259408-27260666:+|nuORF ENST00000460904.1_1_2:27259408-27260666:+|nuORF MSMS UPN47_class_I_Rep_2 3 572.83642578125 2 572.834926 1143.6553 NaN NaN NaN NaN NaN NaN NaN 92.057 1 95.522 95.022 96.022 3.4652 0 0 0 0.40738 1 22769 22769 0.79363 0.19213 1 16818 6855 10798 10804 20453 20453 0.08921721222122869 KKFAQHYVK 9 Unmodified _KKFAQHYVK_ 0 0 0 REV__Tigger15a_dup737|chr2:159345585-159345975:+|1.4573152650334746|0.0724842918402441|4.33|151.0|29|2|anti-sense REV__Tigger15a_dup737|chr2:159345585-159345975:+|1.4573152650334746|0.0724842918402441|4.33|151.0|29|2|anti-sense MSMS UPN48_class_I_Rep_1 5 574.8095092773438 2 574.832383 1147.65021 NaN NaN NaN NaN NaN NaN NaN 62.495 1 65.957 65.457 66.457 3.4625 0 0 0 0.39518 1 13991 13991 1.8442 0.19162 1 + 16819 32591 10799 10805 20454 20454 0.08229417359507352 KKFEKKKKKK 10 Unmodified _KKFEKKKKKK_ 0 0 0 REV__L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|23|1|sense REV__L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|23|1|sense MSMS UPN47_class_I_Rep_2 3 440.6324462890625 3 440.634368 1318.88128 NaN NaN NaN NaN NaN NaN NaN 92.498 1 95.963 95.463 96.463 3.4652 0 0 0 0.53105 1 22862 22862 0.15932 0 1 + 16820 30348 10800 10806 20455 20455 0.23459045341337514 KKFFASYLD 9 Unmodified _KKFFASYLD_ 0 0 0 REV__L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|22|1|sense REV__L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|22|1|sense MSMS UPN48_class_I_Rep_1 5 559.7970581054688 2 559.797675 1117.5808 NaN NaN NaN NaN NaN NaN NaN 25.991 1 29.557 29.057 30.057 3.5667 0 0 0 0.39518 1 3116 3116 1.8442 0 1 + 16821 29219 10801 10807 20456 20456 0.02670913620090687 KKFFNVLY 8 Unmodified _KKFFNVLY_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|296|3|anti-sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|296|3|anti-sense MSMS UPN48_class_I_Rep_2 6 529.8046264648438 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 24.381 1 28.02 27.52 28.52 3.6397 0 0 0 0.40746 1 2819 2819 0.69038 0 1 + 16822 29071 10802 10808 20457 20457 0.06955825207955968 KKFIKALLIRQ 11 Unmodified _KKFIKALLIRQ_ 0 0 0 L1ME2z_dup1209|chr3:49771339-49771930:+|1.08332702073909|0.0081511218175623|7.05|151.0|12|2|sense L1ME2z_dup1209|chr3:49771339-49771930:+|1.08332702073909|0.0081511218175623|7.05|151.0|12|2|sense L1ME2z_dup1209|chr3:49771339-49771930:+|1.08332702073909|0.0081511218175623|7.05|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 453.3061218261719 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.88 1 121.54 121.04 122.04 3.6627 0 0 0 0.38417 1 28257 28257 0.08335 0.08335 1 16823 12542 10803 10809 20458 20458 0.23275331858417303 KKFISIRRNRQ 11 Unmodified _KKFISIRRNRQ_ 0 0 0 REV__L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|4|1|sense REV__L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 482.6335144042969 3 482.631909 1444.8739 NaN NaN NaN NaN NaN NaN NaN 105.57 1 109.2 108.7 109.7 3.6277 0 0 0 0.38417 1 25431 25431 0.094841 0 1 + 16824 24492 10804 10810 20459 20459 0.16925705793664747 KKFKEDLR 8 Unmodified _KKFKEDLR_ 0 0 0 ENST00000504241.1_1_5:180625117-180625708:-|nuORF;nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7 ENST00000504241.1_1_5:180625117-180625708:-|nuORF ENST00000504241.1_1_5:180625117-180625708:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.3159790039062 2 532.316566 1062.61858 0.33761 0.00017971 0.3421 0.0001821 0.6797 0.00036182 532.3165490203224 108.82 0.23237 108.82 108.8 109.04 0 16 13 2 0 0 0 0.82752 1 26669 26669 7.2892 0 1 1836200 16825 3424 10805 10811 20460 20460 0.0897742460556401 KKFKFIRRE 9 Unmodified _KKFKFIRRE_ 0 0 0 REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|48|3|sense REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|48|3|sense MSMS UPN48_class_I_Rep_3 7 626.8694458007812 2 626.387857 1250.76116 NaN NaN NaN NaN NaN NaN NaN 60.893 1 64.406 63.906 64.906 3.5129 0 0 0 0.3967 1 13413 13413 1.4819 0.28856 1 + 16826 30711 10806 10812 20461 20461 0.14581057067607617 KKFLKPLIKV 10 Unmodified _KKFLKPLIKV_ 0 0 0 L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 405.3004150390625 3 405.284677 1212.8322 NaN NaN NaN NaN NaN NaN NaN 86.456 1 89.897 89.397 90.397 3.4407 0 0 0 0.53105 1 21506 21506 0.15932 0 1 16827 8834 10807 10813 20462 20462 0.23429757052394962 KKFLKPLIKV 10 Unmodified _KKFLKPLIKV_ 0 0 0 L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 405.2910461425781 3 405.284677 1212.8322 NaN NaN NaN NaN NaN NaN NaN 88.233 1 91.68 91.18 92.18 3.4471 0 0 0 0.53105 1 21942 21942 0.15932 0 1 16828 8834 10807 10813 20463 20463 0.23429757052394962 KKFLKPLIKV 10 Unmodified _KKFLKPLIKV_ 0 0 0 L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense L1M4_dup1317|chr1:243231193-243231828:+|1.18936905138752|0.0165520407149106|6.17|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 405.28472900390625 3 405.284677 1212.8322 NaN NaN NaN NaN NaN NaN NaN 88.746 1 92.199 91.699 92.699 3.4525 0 0 0 0.53105 1 22059 22059 0.15932 0 1 16829 8834 10807 10813 20464 20464 0.23429757052394962 KKFLSVFY 8 Unmodified _KKFLSVFY_ 0 0 0 REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|352|3|anti-sense REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|352|3|anti-sense MSMS UPN46_class_I_Rep_3 1 516.2832641601562 2 516.299853 1030.58515 NaN NaN NaN NaN NaN NaN NaN 12.998 1 12.998 12.498 13.498 0 0 0 0 0.40738 1 268 268 0.79363 0 1 + 16830 30157 10808 10814 20465 20465 0.07108422833675831 KKFLSVFY 8 Unmodified _KKFLSVFY_ 0 0 0 REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|352|3|anti-sense REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|352|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.302978515625 2 516.299853 1030.58515 NaN NaN NaN NaN NaN NaN NaN 48.46 1 51.807 51.307 52.307 3.3465 0 0 0 0.40581 1 10479 10479 2.8892 0 1 + 16831 30157 10808 10814 20466 20466 0.07108422833675831 KKFPPGHVIVE 11 Unmodified _KKFPPGHVIVE_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MSMS UPN48_class_I_Rep_1 5 625.8648681640625 2 625.866423 1249.71829 NaN NaN NaN NaN NaN NaN NaN 108.68 1 112.31 111.81 112.81 3.6321 0 0 0 0.38417 1 26311 26311 5.7319 0.43497 1 16832 4765 10809 10815 20467 20467 0.10342242219530817 KKFRHSSV 8 Unmodified _KKFRHSSV_ 0 0 0 REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|31|2|sense REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.78729248046875 2 494.787976 987.561398 0.18143 8.9769E-05 -1.184 -0.00058584 -1.0026 -0.00049607 494.7873715383605 48.547 0.54129 51.781 51.577 52.118 3.2345 34 26 2 0 0 0 0.82752 1 10602 10602 6.7232 1.4263 1 49946 + 16833 28722 10810 10816 20468 20468 0.06712002119854787 KKFRHSSV 8 Unmodified _KKFRHSSV_ 0 0 0 REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|31|2|sense REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|31|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 494.787976 987.561398 -0.040612 -2.0094E-05 -1.1676 -0.0005777 -1.2082 -0.00059779 494.7875277618133 48.103 0.429 51.785 51.622 52.051 3.6819 -0.012943 0.00011246 NaN 6.7232 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 56953 + 16834 28722 10810 10816 0.06712002119854787 KKFRLYYS 8 Unmodified _KKFRLYYS_ 0 0 0 REV__L1MC4_dup21743|chr17:47453250-47454090:+|2.370244189297442|0.2002462898820483|3.57|151.0|23|2|sense REV__L1MC4_dup21743|chr17:47453250-47454090:+|2.370244189297442|0.2002462898820483|3.57|151.0|23|2|sense MSMS UPN48_class_I_Rep_1 5 552.7449951171875 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 26.259 1 29.826 29.326 30.326 3.5667 0 0 0 0.40746 1 3196 3196 0.69038 0.088878 1 + 16835 26878 10811 10817 20469 20469 0.06510326093894037 KKFRTPSFLK 10 Unmodified _KKFRTPSFLK_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3;ENSG00000075340|ENST00000264436|ADD2;ENST00000513328.6_1_4:2916713-2930247:+|nuORF;ENST00000398125.5_1_4:2916713-2930247:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MSMS UPN47_class_I_Rep_2 3 417.92205810546875 3 417.923919 1250.74993 NaN NaN NaN NaN NaN NaN NaN 98.776 1 102.27 101.77 102.77 3.4897 0 0 0 0.53105 1 24211 24211 0.50596 0 1 16836 1297 10812 10818 20470 20470 0.1345823497345009 KKFSYGIR 8 Unmodified _KKFSYGIR_ 0 0 0 REV__ENSG00000108651|ENST00000261708|UTP6;REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF REV__ENSG00000108651|ENST00000261708|UTP6 MSMS UPN47_class_I_Rep_1 2 499.3112487792969 2 499.792727 997.5709 NaN NaN NaN NaN NaN NaN NaN 22.508 1 26.212 25.712 26.712 3.7042 0 0 0 0.40746 1 2628 2628 0.69038 0 1 + 16837 18389;23017 10813 10819 20471 20471 0.07201770405379193 KKFWLKWRHFW 11 Unmodified _KKFWLKWRHFW_ 0 0 0 L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|46|3|sense L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|46|3|sense L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|46|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 415.9150390625 4 416.235853 1660.91431 0.070221 2.9228E-05 0.37115 0.00015449 0.44137 0.00018372 416.48625192281446 41.787 0.032997 41.787 41.763 41.796 0 5 3 2 0 0 0 22.551 1 8219 8219 0 0 1 38918 16838 13202 10814 10820 20472 20472 0.11028672184056632 KKFWRLMLVLV 11 Unmodified _KKFWRLMLVLV_ 0 0 0 L1MB3_dup908|chr1:153906525-153907637:+|3.8735153097750703|0.0196090769883223|7.63|151.0|22|2|sense L1MB3_dup908|chr1:153906525-153907637:+|3.8735153097750703|0.0196090769883223|7.63|151.0|22|2|sense L1MB3_dup908|chr1:153906525-153907637:+|3.8735153097750703|0.0196090769883223|7.63|151.0|22|2|sense MSMS UPN47_class_I_Rep_2 3 478.3014221191406 3 478.300221 1431.87883 NaN NaN NaN NaN NaN NaN NaN 28.608 1 32.107 31.607 32.607 3.4986 0 0 0 0.38417 1 4462 4462 0.094841 0 1 16839 10468 10815 10821 20473 20473 0.18016873612032214 KKFYKYEE 8 Unmodified _KKFYKYEE_ 0 0 0 ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1 ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENST00000496432.6_1_1:10713095-10754402:-|nuORF MSMS UPN47_class_I_Rep_3 4 567.7955322265625 2 567.795132 1133.57571 NaN NaN NaN NaN NaN NaN NaN 70.624 1 73.835 73.335 74.335 3.2113 0 0 0 0.40625 1 17287 17287 2.3027 0.24298 1 16840 2687 10816 10822 20474 20474 0.01426609757481856 KKGAGGGG 8 Unmodified _KKGAGGGG_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MULTI-MSMS UPN48_class_I_Rep_3 7 631.3533935546875 1 631.3522 630.344923 0.66808 0.0004218 1.0443 0.00065932 1.7124 0.0010811 631.3524421906993 71.492 1.0436 75.019 74.432 75.476 3.5266 150 100 2 0 0 0 0.82752 1 16535 16535 0 0 1 137380 16841 5474 10817 10823 20475 20475 0.014964462861485117 KKGAGGGG 8 Unmodified _KKGAGGGG_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 1 631.3522 630.344923 0.48813 0.00030818 1.2036 0.0007599 1.6917 0.0010681 631.3526770698861 71.324 1.081 74.874 74.519 75.6 3.5505 -0.07206 4.7868E-05 NaN 0 136 114 2 NaN NaN NaN NaN 0 NaN NaN 0 157350 16842 5474 10817 10823 0.014964462861485117 KKGFLWTT 8 Unmodified _KKGFLWTT_ 0 0 0 REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|90|1|anti-sense REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|90|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 490.9154052734375 2 490.781828 979.549102 0.19207 9.4265E-05 -2.68 -0.0013153 -2.488 -0.001221 490.781909922374 37.724 0.063675 41.229 41.202 41.266 3.5052 7 5 2 0 0 0 0.72333 1 6449 6449 2.3027 0 1 37653 + 16843 32374 10818 10824 20476 20476 0.05850965656793505 KKGHKLRRV 9 Unmodified _KKGHKLRRV_ 0 0 0 HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|149|3|anti-sense;HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|191|3|anti-sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|149|3|anti-sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|149|3|anti-sense MSMS UPN47_class_I_Rep_2 3 561.3727416992188 2 561.372541 1120.73053 NaN NaN NaN NaN NaN NaN NaN 104.59 1 108.12 107.62 108.62 3.5289 0 0 0 0.4007 1 25395 25395 0.52476 0.066424 1 16844 8416 10819 10825 20477 20477 0.1749932347320282 KKGKTERP 8 Unmodified _KKGKTERP_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|83|1|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|83|1|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|83|1|sense MSMS UPN47_class_I_Rep_2 3 472.28790283203125 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.56 1 91.007 90.507 91.507 3.4471 0 0 0 0.40604 1 21766 21766 2.5775 0 1 16845 9653 10820 10826 20478 20478 0.08748582399982752 KKGLSTQAI 9 Unmodified _KKGLSTQAI_ 0 0 0 ENSG00000132128|ENST00000617190|LRRC41;nc|ENSG00000132128|Q15345-3|LRRC41;ENST00000469150.1_1_1:46763228-46764055:-|nuORF ENSG00000132128|ENST00000617190|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 MULTI-MSMS UPN48_class_I_Rep_2 6 473.29010009765625 2 473.290017 944.565481 0.25642 0.00012136 0.16588 7.8509E-05 0.4223 0.00019987 473.2899454264877 63.678 0.083496 67.152 67.131 67.215 3.4743 7 4 2 0 0 0 0.43153 1 14349 14349 6.2058 0.97511 1 94272 16846 2733 10821 10827 20479 20479 0.09098046822896322 KKGNIPYD 8 Unmodified _KKGNIPYD_ 0 0 0 L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|27|2|sense L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|27|2|sense L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|27|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 467.7530822753906 2 467.753267 933.491981 0.085837 4.0151E-05 -0.1236 -5.7812E-05 -0.037758 -1.7662E-05 467.7531456540117 50.641 1.0002 54.262 53.844 54.844 3.621 149 64 3 0 0 0 0.82752 1 10204 10204 2.3027 0 1 997580 16847 12278 10822 10828 20480 20480 0.022574983804133808 KKGRYIAY 8 Unmodified _KKGRYIAY_ 0 0 0 MER83_dup318|chr12:104608241-104608662:+|4.237465534574074|0.0100164973366534|8.72|151.0|23|2|anti-sense MER83_dup318|chr12:104608241-104608662:+|4.237465534574074|0.0100164973366534|8.72|151.0|23|2|anti-sense MER83_dup318|chr12:104608241-104608662:+|4.237465534574074|0.0100164973366534|8.72|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_1 2 499.7780456542969 2 499.792727 997.5709 NaN NaN NaN NaN NaN NaN NaN 41.315 1 44.987 44.487 45.487 3.6719 0 0 0 0.40746 1 8283 8283 0.69038 0 1 16848 16218 10823 10829 20481 20481 0.07201770405345087 KKGYGRWC 8 Unmodified _KKGYGRWC_ 0 0 0 REV__L1PB3_dup1703|chr8:119812753-119813267:-|1.0116692415378217|0.0134812999670721|6.23|151.0|15|3|sense REV__L1PB3_dup1703|chr8:119812753-119813267:-|1.0116692415378217|0.0134812999670721|6.23|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 499.256103515625 2 499.255454 996.496355 NaN NaN NaN NaN NaN NaN NaN 19.812 1 23.35 22.85 23.85 3.5378 0 0 0 0.40746 1 1566 1566 0.69038 0 1 + 16849 30547 10824 10830 20482 20482 -0.002033156776519718 KKHACPVNALI 11 Unmodified _KKHACPVNALI_ 0 0 0 REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|236|3|anti-sense REV__L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|236|3|anti-sense MSMS UPN46_class_I_Rep_3 1 597.3445434570312 2 597.3448 1192.67505 NaN NaN NaN NaN NaN NaN NaN 67.635 1 67.635 67.135 68.135 0 0 0 0 0.38417 1 15404 15404 1.1933 0 1 + 16850 30579 10825 10831 20483 20483 0.08641729170585677 KKHATLKLSRN 11 Unmodified _KKHATLKLSRN_ 0 0 0 REV__nc|ENSG00000196247|Q9UII5|ZNF107 REV__nc|ENSG00000196247|Q9UII5|ZNF107 MSMS UPN46_class_I_Rep_3 1 648.3734741210938 2 648.398953 1294.78335 NaN NaN NaN NaN NaN NaN NaN 93.974 1 93.974 93.474 94.474 0 0 0 0 0.38417 1 22789 22789 1.0715 0 1 + 16851 21024 10826 10832 20484 20484 0.14775236745367692 KKHCTCVGL 9 Unmodified _KKHCTCVGL_ 0 0 0 REV__ENST00000607283.5_1_3:53077257-53126395:-|nuORF REV__ENST00000607283.5_1_3:53077257-53126395:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.75640869140625 2 494.756972 987.499392 -0.46581 -0.00023046 -0.52698 -0.00026073 -0.99279 -0.00049119 494.7566091493521 26.569 0.40719 29.917 29.718 30.125 3.3478 45 33 2 0 0 0 0.49026 1 3865 3865 1.6526 0 1 39032 + 16852 23235 10827 10833 20485 20485 0.005141913848319746 KKHEDVKQYKR 11 Unmodified _KKHEDVKQYKR_ 0 0 0 ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 MSMS UPN46_class_I_Rep_3 1 486.9437561035156 3 486.944042 1457.8103 NaN NaN NaN NaN NaN NaN NaN 29.8 1 29.8 29.3 30.3 0 0 0 0 0.38417 1 4769 4769 0.45452 0.046251 1 16853 3281 10828 10834 20486 20486 0.09970300565873913 KKHEKMLI 8 Unmodified _KKHEKMLI_ 0 0 0 L1PA7_dup11222|chr14:23945678-23949611:+|1.0082258839352627|0.3674126690895025|1.46|150.0|112|3|sense;L1PA3_dup2801|chr4:102697356-102702634:-|7.846325797400948|0.327652332305008|4.58|151.0|71|2|sense L1PA7_dup11222|chr14:23945678-23949611:+|1.0082258839352627|0.3674126690895025|1.46|150.0|112|3|sense L1PA7_dup11222|chr14:23945678-23949611:+|1.0082258839352627|0.3674126690895025|1.46|150.0|112|3|sense MSMS UPN48_class_I_Rep_1 5 513.860107421875 2 513.810062 1025.60557 NaN NaN NaN NaN NaN NaN NaN 23.348 1 26.909 26.409 27.409 3.5605 0 0 0 0.40746 1 2424 2424 0.69038 0 1 16854 14251 10829 10835 20487 20487 0.09379270221825209 KKHKKHSSV 9 Unmodified _KKHKKHSSV_ 0 0 0 LOR1-int_dup267|chr2:240550559-240551705:+|1.5760282654575437|0.066966394061855|4.56|151.0|61|2|anti-sense LOR1-int_dup267|chr2:240550559-240551705:+|1.5760282654575437|0.066966394061855|4.56|151.0|61|2|anti-sense LOR1-int_dup267|chr2:240550559-240551705:+|1.5760282654575437|0.066966394061855|4.56|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 539.8295288085938 2 539.827632 1077.64071 NaN NaN NaN NaN NaN NaN NaN 49.775 1 53.47 52.97 53.97 3.6946 0 0 0 0.38916 1 10093 10093 3.2813 0.28607 1 16855 15500 10830 10836 20488 20488 0.10499649073994988 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_1 5 441.29742431640625 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 45.592 1 49.108 48.608 49.608 3.5162 0 0 0 0.53105 1 8808 8808 0.15932 0.064481 1 16856 2100 10831 10837 20489 20489 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_1 5 441.2974548339844 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 45.997 1 49.513 49.013 50.013 3.5162 0 0 0 0.53105 1 8932 8932 0.13989 0 1 16857 2100 10831 10837 20490 20490 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_1 5 441.29754638671875 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 48.081 1 51.603 51.103 52.103 3.5219 0 0 0 0.53105 1 9571 9571 0.13989 0.04505 1 16858 2100 10831 10837 20491 20491 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_2 6 441.2976989746094 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 19.92 1 23.57 23.07 24.07 3.6497 0 0 0 0.53105 1 1612 1612 0.15932 0.064481 1 16859 2100 10831 10837 20492 20492 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_2 6 441.2975158691406 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 68.169 1 71.677 71.177 72.177 3.5083 0 0 0 0.53105 1 15704 15704 0.15932 0 1 16860 2100 10831 10837 20493 20493 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_2 6 441.29736328125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 73.992 1 77.57 77.07 78.07 3.5779 0 0 0 0.53105 1 17397 17397 0.13989 0.04505 1 16861 2100 10831 10837 20494 20494 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_3 7 441.29827880859375 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 45.747 1 49.384 48.884 49.884 3.6369 0 0 0 0.53105 1 8795 8795 0.15932 0.064481 1 16862 2100 10831 10837 20495 20495 0.22148866441534665 KKHKKKRRRG 10 Unmodified _KKHKKKRRRG_ 0 0 0 ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron;ENSG00000114933|ENST00000403263|INO80D ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron ENSG00000114933.16,INO80D,chr2,-,I11.1,206005534,206007283|70|7.74|1|intron MSMS UPN48_class_I_Rep_3 7 441.2973327636719 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 67.234 1 70.741 70.241 71.241 3.5077 0 0 0 0.53105 1 15334 15334 0.13989 0.04505 1 16863 2100 10831 10837 20496 20496 0.22148866441534665 KKHKKKTQEIS 11 Unmodified _KKHKKKTQEIS_ 0 0 0 L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.2762145996094 3 452.277021 1353.80923 0.012625 5.71E-06 -1.1134 -0.00050358 -1.1008 -0.00049787 452.27644979535114 99.369 0.17256 102.98 102.85 103.02 3.6065 34 23 2 0 0 0 0.68132 1 23972 23972 0.40827 0 1 147170 16864 10648 10832 10838 20497 20497 0.14648086196984877 KKHKKKTQEIS 11 Unmodified _KKHKKKTQEIS_ 0 0 0 L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 452.277021 1353.80923 0.012625 5.71E-06 -1.1134 -0.00050358 -1.1008 -0.00049787 452.27644979535114 99.369 0.17256 102.98 102.85 103.02 3.6065 0.010316 -0.00013583 NaN 0.40827 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 147170 16865 10648 10832 10838 0.14648086196984877 KKHKKKTQEIS 11 Unmodified _KKHKKKTQEIS_ 0 0 0 L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 452.277021 1353.80923 0.15651 7.0786E-05 -1.1641 -0.00052651 -1.0076 -0.00045573 452.27654905526936 99.111 0.16154 102.88 102.8 102.96 3.7707 -0.083404 -0.00020463 NaN 0.40827 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 117410 16866 10648 10832 10838 0.14648086196984877 KKHKKKTQEIS 11 Unmodified _KKHKKKTQEIS_ 0 0 0 L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense L1MB5_dup7402|chr15:93023022-93023890:-|1.03194360799682|0.3214562711336197|1.68|150.0|22|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 452.277021 1353.80923 0.16937 7.6604E-05 -0.86446 -0.00039097 -0.69508 -0.00031437 452.2766192783276 99.155 0.30818 103.04 102.86 103.17 3.8839 0.073088 0.00020199 NaN 0.40827 65 43 2 NaN NaN NaN NaN 0 NaN NaN 0 111180 16867 10648 10832 10838 0.14648086196984877 KKHLIHTSS 9 Unmodified _KKHLIHTSS_ 0 0 0 L1MCa_dup2339|chr5:80859877-80861987:-|1.7810620645572754|0.1202201979615777|3.89|151.0|15|1|sense L1MCa_dup2339|chr5:80859877-80861987:-|1.7810620645572754|0.1202201979615777|3.89|151.0|15|1|sense L1MCa_dup2339|chr5:80859877-80861987:-|1.7810620645572754|0.1202201979615777|3.89|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 525.8054809570312 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 39.564 1 43.293 42.793 43.793 3.7297 0 0 0 0.39518 1 7035 7035 1.8442 0 1 16868 11784 10833 10839 20498 20498 0.07536253945750104 KKHLKIFG 8 Unmodified _KKHLKIFG_ 0 0 0 L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|60|3|sense L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|60|3|sense L1M3de_dup237|chrX:74169867-74172139:+|1.0346891444358497|0.0536265646957042|4.27|151.0|60|3|sense MSMS UPN47_class_I_Rep_3 4 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 92.225 1 95.628 95.128 96.128 3.4034 0 0 0 0.40738 1 23033 23033 0.79363 0 1 16869 8795 10834 10840 20499 20499 0.12634951164693575 KKHMRNGLPG 10 Unmodified _KKHMRNGLPG_ 0 0 0 REV__MER1B_dup1002|chr3:71465717-71466058:+|1.2298487236875917|0.0078626813821863|7.29|151.0|1|1|sense REV__MER1B_dup1002|chr3:71465717-71466058:+|1.2298487236875917|0.0078626813821863|7.29|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 569.3165893554688 2 569.319117 1136.62368 NaN NaN NaN NaN NaN NaN NaN 54.297 1 57.866 57.366 58.366 3.5694 0 0 0 0.53105 1 11401 11401 6.7232 0.99131 1 + 16870 31131 10835 10841 20500 20500 0.060834051965230174 KKHNTPKE 8 Unmodified _KKHNTPKE_ 0 0 0 REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|49|1|sense REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|49|1|sense MSMS UPN46_class_I_Rep_3 1 491.2756042480469 2 491.277441 980.540328 NaN NaN NaN NaN NaN NaN NaN 50.679 1 50.679 50.179 51.179 0 0 0 0 0.40659 1 10720 10720 1.8442 0 1 + 16871 29434 10836 10842 20501 20501 0.049279920203161964 KKHRDKMLR 9 Unmodified _KKHRDKMLR_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3614501953125 2 606.361316 1210.70808 0.41715 0.00025294 -0.56634 -0.00034341 -0.14919 -9.0465E-05 606.3607273567933 33.262 0.059032 33.262 33.216 33.275 0 6 4 2 0 0 0 0.48846 1 5795 5795 1.8442 0 1 244020 16872 6834 10837 10843 20502 20502 0.11115356013283417 KKHRDKMLR 9 Unmodified _KKHRDKMLR_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 606.3612060546875 2 606.361316 1210.70808 0.6349 0.00038498 0.43563 0.00026415 1.0705 0.00064913 606.3609626437168 108.66 0.66357 112.19 112.08 112.74 3.5333 239 78 4 0 0 0 0.43153 1 26493 26493 6.2058 0.47393 1 60102000 16873 6834 10837 10843 20503 20503 0.11115356013283417 KKHRDKMLR 9 Unmodified _KKHRDKMLR_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 606.3614501953125 2 606.361316 1210.70808 0.48839 0.00029614 0.49626 0.00030091 0.98465 0.00059705 606.360882781156 108.69 0.70425 112.36 112.23 112.93 3.6746 197 75 3 0 0 0 0.43153 1 25866 25866 6.2058 0.47393 1 29446000 16874 6834 10837 10843 20504 20504 0.11115356013283417 KKHRFLIR 8 Unmodified _KKHRFLIR_ 0 0 0 REV__L1MB7_dup19876|chr17:39313949-39314350:-|1.2426051081476763|0.0131943214584857|6.56|151.0|12|3|sense REV__L1MB7_dup19876|chr17:39313949-39314350:-|1.2426051081476763|0.0131943214584857|6.56|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 549.35400390625 2 549.35636 1096.69817 NaN NaN NaN NaN NaN NaN NaN 101.53 1 105.05 104.55 105.55 3.5151 0 0 0 0.40625 1 24768 24768 2.3027 0 1 + 16875 26201 10838 10844 20505 20505 0.15368536070218397 KKHSCVIGNY 10 Unmodified _KKHSCVIGNY_ 0 0 0 REV__L1MB8_dup2136|chr2:177258166-177258617:+|2.2810769106662563|0.0699605017891133|5.03|151.0|8|2|sense REV__L1MB8_dup2136|chr2:177258166-177258617:+|2.2810769106662563|0.0699605017891133|5.03|151.0|8|2|sense MSMS UPN48_class_I_Rep_1 5 574.79736328125 2 574.797683 1147.58081 NaN NaN NaN NaN NaN NaN NaN 26.462 1 30.029 29.529 30.529 3.5667 0 0 0 0.53105 1 3254 3254 1.4819 0 1 + 16876 26393 10839 10845 20506 20506 0.012925903484529044 KKHWVALIE 9 Unmodified _KKHWVALIE_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|32|3|sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.8357543945312 2 562.334759 1122.65496 0.63496 0.00035706 -0.14292 -8.0367E-05 0.49205 0.00027669 562.3341950050907 110.44 0.11722 113.96 113.91 114.02 3.5271 32 15 3 0 0 0 0.48846 1 26882 26882 1.8442 1.8442 1 126420 + 16877 31389 10840 10846 20507 20507 0.09854301502286944 KKHWVALIE 9 Unmodified _KKHWVALIE_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|32|3|sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|32|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.3348999023438 2 562.334759 1122.65496 0.49267 0.00027704 0.74314 0.0004179 1.2358 0.00069494 562.3344148974894 109.96 0.30602 113.63 113.57 113.88 3.6715 53 38 3 0 0 0 0.48846 1 26205 26205 1.8442 0 1 159340 + 16878 31389 10840 10846 20508 20508 0.09854301502286944 KKHWYWVT 8 Unmodified _KKHWYWVT_ 0 0 0 REV__L1MB7_dup5821|chr4:105249325-105250380:-|1.253622289370875|0.0505824815845467|4.63|151.0|1|1|sense REV__L1MB7_dup5821|chr4:105249325-105250380:-|1.253622289370875|0.0505824815845467|4.63|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 574.3045043945312 2 574.306001 1146.59745 NaN NaN NaN NaN NaN NaN NaN 28.236 1 31.867 31.367 32.367 3.6311 0 0 0 0.40404 1 3861 3861 5.2307 0 1 + 16879 25688 10841 10847 20509 20509 0.030014592966836062 KKIAKKLTQR 10 Unmodified _KKIAKKLTQR_ 0 0 0 L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|7|1|sense L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|7|1|sense L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 405.26666259765625 3 405.274952 1212.80303 NaN NaN NaN NaN NaN NaN NaN 68.419 1 71.928 71.428 72.428 3.5094 0 0 0 0.53105 1 15687 15687 0.77653 0.27058 1 16880 10883 10842 10848 20510 20510 0.20513612756121802 KKIFIWPT 8 Unmodified _KKIFIWPT_ 0 0 0 L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|24|1|sense L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|24|1|sense L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|24|1|sense MSMS UPN48_class_I_Rep_3 7 516.7978515625 2 516.81567 1031.61679 NaN NaN NaN NaN NaN NaN NaN 111.1 1 114.76 114.26 115.26 3.6654 0 0 0 0.40746 1 26359 26359 0.69038 0 1 16881 12666 10843 10849 20511 20511 0.10224415587595104 KKIGKILHI 9 Unmodified _KKIGKILHI_ 0 0 0 REV__L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense REV__L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense MSMS UPN47_class_I_Rep_2 3 525.3629150390625 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 66.08 1 69.339 68.839 69.839 3.2588 0 0 0 0.40038 1 15853 15853 0.6015 0 1 + 16882 30535 10844 10850 20512 20512 0.18967768778657046 KKIGKILHI 9 Unmodified _KKIGKILHI_ 0 0 0 REV__L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense REV__L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|75|2|sense MSMS UPN48_class_I_Rep_3 7 525.3633422851562 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 62.22 1 65.731 65.231 66.231 3.5104 0 0 0 0.40038 1 13813 13813 0.6015 0 1 + 16883 30535 10844 10850 20513 20513 0.18967768778657046 KKIHELKII 9 Unmodified _KKIHELKII_ 0 0 0 L1MEi_dup134|chr1:100507980-100508906:-|1.9419005329516592|0.0968087473631398|4.33|151.0|27|3|sense L1MEi_dup134|chr1:100507980-100508906:-|1.9419005329516592|0.0968087473631398|4.33|151.0|27|3|sense L1MEi_dup134|chr1:100507980-100508906:-|1.9419005329516592|0.0968087473631398|4.33|151.0|27|3|sense MSMS UPN47_class_I_Rep_1 2 561.6881103515625 2 561.373884 1120.73321 NaN NaN NaN NaN NaN NaN NaN 107.22 1 110.9 110.4 111.4 3.6724 0 0 0 0.40098 1 26266 26266 0.45834 0 1 16884 13450 10845 10851 20514 20514 0.17767734087487952 KKIHKLNIKI 10 Unmodified _KKIHKLNIKI_ 0 0 0 L1MB3_dup14308|chr16:53069304-53070553:-|1.9429282084970667|0.0318472270528968|5.93|151.0|33|3|sense L1MB3_dup14308|chr16:53069304-53070553:-|1.9429282084970667|0.0318472270528968|5.93|151.0|33|3|sense L1MB3_dup14308|chr16:53069304-53070553:-|1.9429282084970667|0.0318472270528968|5.93|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 617.9210205078125 2 617.921532 1233.82851 NaN NaN NaN NaN NaN NaN NaN 89.338 1 92.731 92.231 93.231 3.3931 0 0 0 0.53105 1 22400 22400 0.40072 0 1 16885 10349 10846 10852 20515 20515 0.22095087278535175 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.64654541015625 3 483.646391 1447.91734 0.21915 0.00010599 0.49553 0.00023966 0.71467 0.00034565 483.64649137705584 50.696 0.1311 50.696 50.594 50.725 0 33 15 3 0 0 0 0.68024 1 10725 10725 0.50596 0.36606 1 1230200 16886 33341 10847 10853 20516 20516 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.646728515625 3 483.646391 1447.91734 0.21565 0.0001043 0.41632 0.00020135 0.63197 0.00030565 483.64648174636824 51.357 0.31833 51.357 51.206 51.524 0 91 35 3 0 0 0 0.68024 1 10947 10947 0.50596 0.36606 1 1270700 16887 33341 10847 10853 20517 20517 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.9809265136719 3 483.646391 1447.91734 0.20599 9.9625E-05 0.33998 0.00016443 0.54597 0.00026406 483.9809549380435 53.236 0.16138 53.236 53.19 53.351 0 28 17 2 0 0 0 0.68024 1 11459 11459 0.50596 0.36606 1 1198700 16888 33341 10847 10853 20518 20518 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.6465759277344 3 483.646391 1447.91734 0.20273 9.8048E-05 0.12246 5.9228E-05 0.32519 0.00015728 483.64636487815307 53.874 0.1749 53.874 53.738 53.913 0 25 16 2 0 0 0 0.68478 1 11628 11628 0.094841 0.011491 1 585910 16889 33341 10847 10853 20519 20519 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.64654541015625 3 483.646391 1447.91734 0.20054 9.6989E-05 0.64158 0.0003103 0.84212 0.00040729 483.6467109475066 54.376 0.16261 54.376 54.249 54.412 0 24 16 3 0 0 0 0.68478 1 11770 11770 0.094841 0.011491 1 332100 16890 33341 10847 10853 20520 20520 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.6474609375 3 483.646391 1447.91734 0.19749 9.5514E-05 1.2982 0.00062789 1.4957 0.0007234 483.64698132368653 54.899 0.052475 54.899 54.883 54.936 0 7 5 2 0 0 0 0.68478 1 11914 11914 0.094841 0 1 207490 16891 33341 10847 10853 20521 20521 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.6466369628906 3 483.646391 1447.91734 -0.1158 -5.6007E-05 0.42483 0.00020547 0.30903 0.00014946 483.6465705089619 46.597 1.1917 50.297 49.306 50.497 3.6999 149 76 3 0 0 0 0.68478 1 9706 9706 0.094841 0 1 430440 16892 33341 10847 10853 20522 20522 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.6464538574219 3 483.646391 1447.91734 -0.067784 -3.2783E-05 0.531 0.00025682 0.46322 0.00022404 483.6466775356997 47.955 0.67873 51.637 51.412 52.091 3.6819 59 35 2 0 0 0 0.68478 1 10297 10297 0.094841 0.011491 1 176630 16893 33341 10847 10853 20523 20523 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_1 2 483.6464538574219 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 89.206 1 92.88 92.38 93.38 3.6738 0 0 0 0.38417 1 22301 22301 0.094841 0 1 16894 33341 10847 10853 20524 20524 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.6466369628906 3 483.646391 1447.91734 0.22219 0.00010746 0.077461 3.7464E-05 0.29966 0.00014493 483.6464423744757 50.379 0.40366 53.722 53.599 54.003 3.3431 27 19 2 0 0 0 0.68478 1 11056 11056 0.094841 0 1 210660 16895 33341 10847 10853 20525 20525 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.31536865234375 3 483.646391 1447.91734 0.28145 0.00013612 -0.07 -3.3855E-05 0.21145 0.00010227 483.6464244603952 51.721 0.52505 55.055 54.798 55.323 3.3332 39 26 2 0 0 0 0.68478 1 11460 11460 0.094841 0.094841 1 226430 16896 33341 10847 10853 20526 20526 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_2 3 483.6464538574219 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 77.875 1 81.218 80.718 81.718 3.3428 0 0 0 0.38417 1 19335 19335 0.094841 0 1 16897 33341 10847 10853 20527 20527 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 483.29241943359375 3 483.646391 1447.91734 -0.0058461 -2.8274E-06 0.19156 9.2649E-05 0.18572 8.9822E-05 483.6465216781814 45.486 0.77877 48.84 48.287 49.066 3.3535 65 44 2 0 0 0 22.551 1 9468 9468 0.094841 0 1 89351 16898 33341 10847 10853 20528 20528 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 483.775634765625 3 483.646391 1447.91734 0.28734 0.00013897 0.50617 0.00024481 0.79351 0.00038378 483.64687776905737 56.057 0.063492 59.358 59.318 59.381 3.3009 4 2 2 0 0 0 22.551 1 12804 12804 0.094841 0 1 19927 16899 33341 10847 10853 20529 20529 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 483.9809875488281 3 483.646391 1447.91734 0.21075 0.00010193 0.34774 0.00016818 0.55849 0.00027011 483.9809352970114 73.631 0.068405 76.935 76.907 76.975 3.3048 5 4 2 0 0 0 22.551 1 18118 18118 0.094841 0 1 196480 16900 33341 10847 10853 20530 20530 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.646484375 3 483.646391 1447.91734 0.22333 0.00010801 0.18669 9.029E-05 0.41001 0.0001983 483.64646692446735 51.216 0.3677 54.432 54.265 54.633 3.2163 23 17 2 0 0 0 0.68081 1 11402 11402 0.45452 0 1 159890 16901 33341 10847 10853 20531 20531 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_3 4 483.6472473144531 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 55.655 1 58.833 58.333 59.333 3.1779 0 0 0 0.38417 1 12735 12735 0.094841 0 1 16902 33341 10847 10853 20532 20532 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 483.7425842285156 3 483.646391 1447.91734 0.0023301 1.1269E-06 0.29911 0.00014466 0.30144 0.00014579 483.9807871114935 46.945 0.70245 50.189 49.879 50.581 3.2439 71 43 2 0 0 0 22.551 1 10007 10007 0.094841 0.011491 1 395930 16903 33341 10847 10853 20533 20533 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 483.7756042480469 3 483.646391 1447.91734 0.08071 3.9035E-05 0.39154 0.00018937 0.47225 0.0002284 483.6465756182657 56.202 0.23882 59.374 59.209 59.448 3.1721 19 16 2 0 0 0 22.551 1 12858 12858 0.094841 0 1 61356 16904 33341 10847 10853 20534 20534 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 483.6464538574219 3 483.646391 1447.91734 0.12762 6.1725E-05 0.1681 8.1299E-05 0.29572 0.00014302 483.64636558654263 49.594 0.17413 53.119 53.061 53.235 3.5246 14 10 2 0 0 0 0.68478 1 10046 10046 0.094841 0 1 179000 16905 33341 10847 10853 20535 20535 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 483.9810791015625 3 483.646391 1447.91734 0.18389 8.8938E-05 0.4394 0.00021251 0.62329 0.00030145 483.64657555204343 49.407 0.29275 53.125 52.983 53.275 3.7175 24 18 2 0 0 0 0.68478 1 9982 9982 0.094841 0.011491 1 486840 16906 33341 10847 10853 20536 20536 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.6465759277344 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 49.292 1 52.921 52.421 53.421 3.6291 0 0 0 0.38417 1 9880 9880 0.094841 0 1 16907 33341 10847 10853 20537 20537 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646391 1447.91734 0.072265 3.4951E-05 -0.22195 -0.00010734 -0.14968 -7.2394E-05 483.6461203933498 56.469 0.12372 59.641 59.595 59.719 3.1721 0.14138 -0.00047952 NaN 0.094841 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 79281 16908 33341 10847 10853 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 483.646391 1447.91734 0.12594 6.091E-05 0.40551 0.00019612 0.53145 0.00025703 483.6465285725537 46.457 0.61644 49.977 49.914 50.53 3.5192 -0.29118 7.0039E-06 NaN 0.50596 143 39 4 NaN NaN NaN NaN 0 NaN NaN 0 6823000 16909 33341 10847 10853 0.21130179246597436 KKIIRKRKCIY 11 Unmodified _KKIIRKRKCIY_ 0 0 0 Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense;Tigger2b_Pri_dup176|chr1:231664763-231665799:+|1.0267941734194983|0.0054699564604409|7.55|150.0|52|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense Tigger2b_Pri_dup98|chr1:150820881-150821646:-|1.1111504303513866|0.1148253692377399|3.27|151.0|33|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 483.646391 1447.91734 0.10722 5.1857E-05 -0.85851 -0.00041522 -0.75129 -0.00036336 483.64545130561777 51.347 0.1644 54.957 54.874 55.038 3.6105 0.010832 -0.0014348 NaN 0.094841 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 98054 16910 33341 10847 10853 0.21130179246597436 KKIKGLLRAVH 11 Unmodified _KKIKGLLRAVH_ 0 0 0 nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;ENSG00000127914.18,AKAP9,chr7,+,I49.1,92101057,92102588|25|7.9|1|intron;nc|ENSG00000127914|Q99996-6|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 MSMS UPN47_class_I_Rep_3 4 631.9242553710938 2 631.924606 1261.83466 NaN NaN NaN NaN NaN NaN NaN 80.665 1 83.974 83.474 84.474 3.309 0 0 0 0.38417 1 20178 20178 0.30703 0 1 16911 2577 10848 10854 20538 20538 0.2142160551006782 KKIKIHKLWK 10 Unmodified _KKIKIHKLWK_ 0 0 0 L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|58|3|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|58|3|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|58|3|sense MSMS UPN48_class_I_Rep_3 7 441.29742431640625 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 22.288 1 26.003 25.503 26.503 3.7144 0 0 0 0.53105 1 2253 2253 0.13989 0.04505 1 16912 8765 10849 10855 20539 20539 0.22819366549515507 KKIKLAAA 8 Unmodified _KKIKLAAA_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS UPN46_class_I_Rep_3 1 422.2658996582031 2 421.794738 841.574923 NaN NaN NaN NaN NaN NaN NaN 14.599 1 14.599 14.099 15.099 0 0 0 0 0.40798 1 673 673 0 0 1 16913 2268 10850 10856 20540 20540 0.1477985989905619 KKIKLAAA 8 Unmodified _KKIKLAAA_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS UPN46_class_I_Rep_3 1 421.79241943359375 2 421.794738 841.574923 NaN NaN NaN NaN NaN NaN NaN 19.688 1 19.688 19.188 20.188 0 0 0 0 0.40798 1 1918 1918 0 0 1 16914 2268 10850 10856 20541 20541 0.1477985989905619 KKIKVSPLKP 10 Unmodified _KKIKVSPLKP_ 0 0 0 Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|92|1|anti-sense Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|92|1|anti-sense Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|92|1|anti-sense MSMS UPN46_class_I_Rep_3 1 569.6858520507812 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 27.637 1 27.637 27.137 28.137 0 0 0 0 0.53105 1 4129 4129 0.35063 0.35063 1 16915 33136 10851 10857 20542 20542 0.2016030712159136 KKILKMLKKL 10 Unmodified _KKILKMLKKL_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|166|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|166|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|166|3|sense MSMS UPN46_class_I_Rep_3 1 621.93896484375 2 621.938337 1241.86212 NaN NaN NaN NaN NaN NaN NaN 40.349 1 40.349 39.849 40.849 0 0 0 0 0.53105 1 7825 7825 0 0 1 16916 10390 10852 10858 20543 20543 0.25086372726104855 KKIPELLA 8 Unmodified _KKIPELLA_ 0 0 0 L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|101|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|101|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|101|2|sense MSMS UPN48_class_I_Rep_1 5 456.3006286621094 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.228 1 43.733 43.233 44.233 3.5048 0 0 0 0.40738 1 7196 7196 0.79363 0 1 16917 14274 10853 10859 20544 20544 0.1262842283366581 KKIQKLERHRR 11 Unmodified _KKIQKLERHRR_ 0 0 0 AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|12|3|sense AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|12|3|sense AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|12|3|sense MSMS UPN47_class_I_Rep_1 2 497.9842529296875 3 497.982942 1490.927 NaN NaN NaN NaN NaN NaN NaN 83.211 1 86.749 86.249 87.249 3.5386 0 0 0 0.38417 1 20805 20805 0.094841 0.094841 1 16918 8 10854 10860 20545 20545 0.2011708357626958 KKIRPQWP 8 Unmodified _KKIRPQWP_ 0 0 0 REV__nc|ENSG00000270379|A2RTY3-3|HEATR9 REV__nc|ENSG00000270379|A2RTY3-3|HEATR9 MSMS UPN46_class_I_Rep_3 1 526.822265625 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 30.855 1 30.855 30.355 31.355 0 0 0 0 0.40746 1 5082 5082 0.69038 0.088878 1 + 16919 21418 10855 10861 20546 20546 0.10533452050640335 KKITERWYINE 11 Unmodified _KKITERWYINE_ 0 0 0 REV__ENST00000593682.1_1_19:12690915-12691281:-|nuORF REV__ENST00000593682.1_1_19:12690915-12691281:-|nuORF MSMS UPN46_class_I_Rep_3 1 493.8079833984375 3 493.936664 1478.78816 NaN NaN NaN NaN NaN NaN NaN 74.231 1 74.231 73.731 74.731 0 0 0 0 0.38417 1 17219 17219 0.40827 0.24894 1 + 16920 23185 10856 10862 20547 20547 0.06792076097462996 KKITKLRILK 10 Unmodified _KKITKLRILK_ 0 0 0 REV__HAL1_dup14771|chr10:74260797-74261952:-|1.2738581542432277|0.012806298073374|6.64|151.0|38|3|sense REV__HAL1_dup14771|chr10:74260797-74261952:-|1.2738581542432277|0.012806298073374|6.64|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 620.7413940429688 2 620.945008 1239.87546 NaN NaN NaN NaN NaN NaN NaN 57.781 1 57.781 57.281 58.281 0 0 0 0 0.53105 1 12681 12681 0.35063 0 1 + 16921 23356 10857 10863 20548 20548 0.26511946829691624 KKITNKITD 9 Unmodified _KKITNKITD_ 0 0 0 L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.821533203125 2 530.821681 1059.62881 0.35883 0.00019047 -1.1146 -0.00059164 -0.75574 -0.00040116 530.8210818610418 76.201 0.38297 79.605 79.469 79.852 3.4034 60 33 2 0 0 0 0.47763 1 18914 18914 2.9952 0 1 95154 16922 11715 10858 10864 20549 20549 0.10137987540110771 KKITNKITD 9 Unmodified _KKITNKITD_ 0 0 0 L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 530.821681 1059.62881 0.27069 0.00014369 -0.93578 -0.00049673 -0.66509 -0.00035304 530.8212592158311 76.276 0.14262 79.598 79.54 79.683 3.3216 0.028322 0.00017527 NaN 2.9952 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 101240 16923 11715 10858 10864 0.10137987540110771 KKITNKITD 9 Unmodified _KKITNKITD_ 0 0 0 L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense L1MC5a_dup13694|chr15:34263790-34264851:+|1.9875974393025009|0.0575638451993598|5.11|151.0|5|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 530.821681 1059.62881 0.40384 0.00021436 -1.1194 -0.00059418 -0.71552 -0.00037981 530.8210880189116 76.249 0.86691 79.507 79.225 80.092 3.2573 -0.06318 -1.9619E-05 NaN 2.9952 123 87 2 NaN NaN NaN NaN 0 NaN NaN 0 168800 16924 11715 10858 10864 0.10137987540110771 KKITRKLPFVK 11 Unmodified _KKITRKLPFVK_ 0 0 0 L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|21|2|sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|21|2|sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 453.3055419921875 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 119.99 1 119.99 119.49 120.49 -0.0013351 0 0 0 0.38417 1 29849 29849 0.50596 0.41111 1 16925 11580 10859 10865 20550 20550 0.23275331858371828 KKIYIILLLI 10 Unmodified _KKIYIILLLI_ 0 0 0 REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|40|3|sense REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|40|3|sense MSMS UPN48_class_I_Rep_2 6 615.4358520507812 2 615.43341 1228.85227 NaN NaN NaN NaN NaN NaN NaN 39.191 1 42.92 42.42 43.42 3.7297 0 0 0 0.53105 1 6926 6926 0 0 1 + 16926 32743 10860 10866 20551 20551 0.24699507992386316 KKIYIILLLI 10 Unmodified _KKIYIILLLI_ 0 0 0 REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|40|3|sense REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|40|3|sense MSMS UPN48_class_I_Rep_3 7 615.4349975585938 2 615.43341 1228.85227 NaN NaN NaN NaN NaN NaN NaN 39.097 1 42.753 42.253 43.253 3.6557 0 0 0 0.53105 1 6797 6797 0 0 1 + 16927 32743 10860 10866 20552 20552 0.24699507992386316 KKIYIILLLI 10 Unmodified _KKIYIILLLI_ 0 0 0 REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|40|3|sense REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|40|3|sense MSMS UPN48_class_I_Rep_3 7 615.4346923828125 2 615.43341 1228.85227 NaN NaN NaN NaN NaN NaN NaN 39.691 1 43.346 42.846 43.846 3.6557 0 0 0 0.53105 1 6972 6972 0 0 1 + 16928 32743 10860 10866 20553 20553 0.24699507992386316 KKKALCWLI 9 Unmodified _KKKALCWLI_ 0 0 0 REV__L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|7|1|sense REV__L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 551.84375 2 551.843905 1101.67326 NaN NaN NaN NaN NaN NaN NaN 82.641 1 86.31 85.81 86.81 3.669 0 0 0 0.40038 1 19631 19631 0.6015 0 1 + 16929 24513 10861 10867 20554 20554 0.12648720152606074 KKKARVAIPVS 11 Unmodified _KKKARVAIPVS_ 0 0 0 L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|154|3|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|154|3|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|154|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 598.895263671875 2 598.895515 1195.77648 -0.02607 -1.5613E-05 -0.086309 -5.169E-05 -0.11238 -6.7303E-05 598.8956066331244 12.457 0.13205 12.457 12.385 12.517 0 22 15 2 0 0 0 0.63951 1 113 113 4.1895 0.90819 1 58257 16930 14634 10862 10868 20555 20555 0.18641923864788623 KKKCFLNNQ 9 Unmodified _KKKCFLNNQ_ 0 0 0 REV__L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|55|3|sense REV__L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|55|3|sense MSMS UPN46_class_I_Rep_3 1 561.8082885742188 2 561.808051 1121.60155 NaN NaN NaN NaN NaN NaN NaN 89.331 1 89.331 88.831 89.831 0 0 0 0 0.39518 1 21487 21487 1.8442 1.1539 1 + 16931 27030 10863 10869 20556 20556 0.045611807281147776 KKKDHLISGLL 11 Unmodified _KKKDHLISGLL_ 0 0 0 ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 626.387451171875 2 626.392805 1250.77106 0.68676 0.00043018 0.47047 0.0002947 1.1572 0.00072488 626.391229659634 108.25 0.09861 108.25 108.19 108.29 0 15 10 2 0 0 0 0.59712 1 26438 26438 5.2969 0 1 4438100 16932 6120 10864 10870 20557 20557 0.15570200282331825 KKKDHLISGLL 11 Unmodified _KKKDHLISGLL_ 0 0 0 ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN47_class_I_Rep_3 4 626.3928833007812 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.56 1 108.08 107.58 108.58 3.5205 0 0 0 0.38417 1 25627 25627 5.2969 0 1 16933 6120 10864 10870 20558 20558 0.15570200282331825 KKKDHLISGLL 11 Unmodified _KKKDHLISGLL_ 0 0 0 ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_2 6 626.3860473632812 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.01 1 107.71 107.21 108.21 3.6991 0 0 0 0.38417 1 24610 24610 5.2969 0.39987 1 16934 6120 10864 10870 20559 20559 0.15570200282331825 KKKDHLISGLL 11 Unmodified _KKKDHLISGLL_ 0 0 0 ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_3 7 626.3941040039062 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 103.99 1 107.73 107.23 108.23 3.7434 0 0 0 0.38417 1 24552 24552 5.2969 0.39987 1 16935 6120 10864 10870 20560 20560 0.15570200282331825 KKKEAQLI 8 Unmodified _KKKEAQLI_ 0 0 0 REV__L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|14|1|sense REV__L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 479.3090515136719 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 43.776 1 47.287 46.787 47.787 3.5103 0 0 0 0.40472 1 8255 8255 4.3292 0 1 + 16936 28334 10865 10871 20561 20561 0.12182923719615246 KKKEHRKFY 9 Unmodified _KKKEHRKFY_ 0 0 0 nc|ENSG00000029153|Q8WYA1-9|BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2 nc|ENSG00000029153|Q8WYA1-9|BMAL2 nc|ENSG00000029153|Q8WYA1-9|BMAL2 MULTI-MSMS UPN48_class_I_Rep_2 6 421.9154357910156 3 421.915535 1262.72478 0.042056 1.7744E-05 -0.41317 -0.00017432 -0.37112 -0.00015658 421.91540663942044 38.242 1.0885 41.959 41.468 42.557 3.7164 188 107 3 0 0 0 0.45441 1 6676 6676 4.897 4.897 1 359370 16937 831 10866 10872 20562 20562 0.10392180170902066 KKKETLWI 8 Unmodified _KKKETLWI_ 0 0 0 REV__MER4-int_dup1090|chr7:30569371-30570047:+|1.024652142490908|0.2131541533771069|2.27|151.0|28|1|anti-sense REV__MER4-int_dup1090|chr7:30569371-30570047:+|1.024652142490908|0.2131541533771069|2.27|151.0|28|1|anti-sense MSMS UPN46_class_I_Rep_3 1 523.3218994140625 2 523.32386 1044.63317 NaN NaN NaN NaN NaN NaN NaN 101.41 1 101.41 100.91 101.91 0 0 0 0 0.40746 1 24742 24742 0.69038 0.088878 1 + 16938 31276 10867 10873 20563 20563 0.11263496753713298 KKKFFLRD 8 Unmodified _KKKFFLRD_ 0 0 0 AluJo_dup63718|chr16:89398458-89398755:+|1.572373021651729|0.0316455131132854|5.63|151.0|17|1|anti-sense AluJo_dup63718|chr16:89398458-89398755:+|1.572373021651729|0.0316455131132854|5.63|151.0|17|1|anti-sense AluJo_dup63718|chr16:89398458-89398755:+|1.572373021651729|0.0316455131132854|5.63|151.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 541.3307495117188 2 541.329476 1080.6444 NaN NaN NaN NaN NaN NaN NaN 85.493 1 85.493 84.993 85.993 0 0 0 0 0.40746 1 20397 20397 0.69038 0 1 16939 120 10868 10874 20564 20564 0.10730318847868148 KKKFRANP 8 Unmodified _KKKFRANP_ 0 0 0 nc|ENSG00000170264|Q3B820-2|FAM161A;nc|ENSG00000170264|Q3B820|FAM161A;ENSG00000170264|ENST00000404929|FAM161A nc|ENSG00000170264|Q3B820-2|FAM161A nc|ENSG00000170264|Q3B820-2|FAM161A MSMS UPN47_class_I_Rep_1 2 494.7942810058594 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 39.809 1 43.476 42.976 43.976 3.6668 0 0 0 0.40625 1 7825 7825 2.3027 0.4585 1 16940 4464 10869 10875 20565 20565 0.10348879016555657 KKKFTFAY 8 Unmodified _KKKFTFAY_ 0 0 0 REV__Tigger3b_dup5732|chr17:42266967-42267676:+|2.31987037960347|0.1754481533204401|3.72|151.0|18|2|sense REV__Tigger3b_dup5732|chr17:42266967-42267676:+|2.31987037960347|0.1754481533204401|3.72|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 516.798095703125 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 43.411 1 46.921 46.421 47.421 3.5103 0 0 0 0.40581 1 8146 8146 2.8892 0.31174 1 + 16941 32759 10870 10876 20566 20566 0.06587538690905603 KKKFVLVLLPH 11 Unmodified _KKKFVLVLLPH_ 0 0 0 MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|26|3|sense MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|26|3|sense MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|26|3|sense MSMS UPN48_class_I_Rep_3 7 441.2975158691406 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 66.056 1 69.563 69.063 70.063 3.5077 0 0 0 0.38417 1 14975 14975 0.50596 0.051438 1 16942 15989 10871 10877 20567 20567 0.21696544455426192 KKKGHKGKN 9 Unmodified _KKKGHKGKN_ 0 0 0 ENSG00000139174|ENST00000345127|PRICKLE1 ENSG00000139174|ENST00000345127|PRICKLE1 ENSG00000139174|ENST00000345127|PRICKLE1 MSMS UPN47_class_I_Rep_3 4 512.732177734375 2 512.82235 1023.63015 NaN NaN NaN NaN NaN NaN NaN 51.173 1 54.389 53.889 54.889 3.2163 0 0 0 0.4007 1 11366 11366 0.52476 0 1 16943 3130 10872 10878 20568 20568 0.11927666419558136 KKKGKAKKK 9 Unmodified _KKKGKAKKK_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MSMS UPN48_class_I_Rep_2 6 522.372802734375 2 522.374218 1042.73388 NaN NaN NaN NaN NaN NaN NaN 108.62 1 112.3 111.8 112.8 3.6746 0 0 0 0.4029 1 25781 25781 0 0 1 16944 1780 10873 10879 20569 20569 0.21422573527206623 KKKGKSLTSK 10 Unmodified _KKKGKSLTSK_ 0 0 0 nc|ENSG00000182901|P49802-2|RGS7 nc|ENSG00000182901|P49802-2|RGS7 nc|ENSG00000182901|P49802-2|RGS7 MULTI-SECPEP UPN48_class_I_Rep_3 7 552.3294067382812 2 552.858598 1103.70264 0.38467 0.00021267 -0.16587 -9.1703E-05 0.2188 0.00012097 552.8586128325693 107.42 0.032944 111.1 111.09 111.12 3.6813 4 2 2 0 0 0 0.84575 1 25330 25330 1.4819 0 1 260870 16945 16769 10874 10880 20570 20570 0.15493955702436324 KKKGLTKH 8 Unmodified _KKKGLTKH_ 0 0 0 REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|21|2|sense REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 470.3081970214844 2 470.308544 938.602535 NaN NaN NaN NaN NaN NaN NaN 41.774 1 45.454 44.954 45.954 3.6792 0 0 0 0.40604 1 8424 8424 2.5775 0 1 + 16946 27811 10875 10881 20571 20571 0.13077763159310507 KKKHLVQI 8 Unmodified _KKKHLVQI_ 0 0 0 ENSG00000122033|ENST00000381120|MTIF3 ENSG00000122033|ENST00000381120|MTIF3 ENSG00000122033|ENST00000381120|MTIF3 MSMS UPN47_class_I_Rep_3 4 497.3318176269531 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 117.72 1 121.17 120.67 121.67 3.4425 0 0 0 0.40746 1 29014 29014 0.69038 0 1 16947 2374 10876 10882 20572 20572 0.15286622710459596 KKKIAAHY 8 Unmodified _KKKIAAHY_ 0 0 0 REV__L1PA13_dup4193|chr8:47466952-47469880:+|9.572322566035089|0.0872632415435912|6.78|151.0|58|2|sense REV__L1PA13_dup4193|chr8:47466952-47469880:+|9.572322566035089|0.0872632415435912|6.78|151.0|58|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 479.2773742675781 2 479.795269 957.575986 0.14292 6.8573E-05 2.3485 0.0011268 2.4914 0.0011953 479.7986173841903 77.259 0.045998 80.674 80.65 80.696 3.4149 5 3 2 0 0 0 0.72333 1 19163 19163 0.79363 0.10326 1 13501 + 16948 29099 10877 10883 20573 20573 0.0955007426798602 KKKIKIHKLW 10 Unmodified _KKKIKIHKLW_ 0 0 0 L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|58|3|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|58|3|sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|58|3|sense MSMS UPN48_class_I_Rep_2 6 441.29791259765625 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 20.173 1 23.823 23.323 24.323 3.6497 0 0 0 0.53105 1 1684 1684 0.13989 0.04505 1 16949 8765 10878 10884 20574 20574 0.22819366549538245 KKKILLNRIL 10 Unmodified _KKKILLNRIL_ 0 0 0 L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|32|2|sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|32|2|sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|32|2|sense MSMS UPN47_class_I_Rep_3 4 619.8055419921875 2 619.937183 1237.85981 NaN NaN NaN NaN NaN NaN NaN 57.154 1 60.322 59.822 60.822 3.1681 0 0 0 0.53105 1 13187 13187 0.40072 0 1 16950 11137 10879 10885 20575 20575 0.2503966031267737 KKKISKRYD 9 Unmodified _KKKISKRYD_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;nc|ENSG00000163214|Q6P158-2|DHX57 ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 MSMS UPN47_class_I_Rep_3 4 583.3599853515625 2 583.356222 1164.69789 NaN NaN NaN NaN NaN NaN NaN 71.973 1 75.192 74.692 75.692 3.2188 0 0 0 0.4007 1 17691 17691 0.52476 0 1 16951 3991 10880 10886 20576 20576 0.12213071559722266 KKKIYKYIYWL 11 Unmodified _KKKIYKYIYWL_ 0 0 0 REV__L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense REV__L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.9783935546875 3 515.977912 1544.91191 0.34451 0.00017776 0.70341 0.00036294 1.0479 0.0005407 516.312762635817 102.53 0.41893 106.24 105.96 106.38 3.7108 80 60 2 0 0 0 0.68081 1 24254 24254 0.45452 0.35968 1 299120 + 16952 25584 10881 10887 20577 20577 0.16124778935750328 KKKKAELR 8 Unmodified _KKKKAELR_ 0 0 0 HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 500.2829895019531 2 500.834926 999.655299 -0.64524 -0.00032316 0.21013 0.00010524 -0.43511 -0.00021792 500.8350749514869 13.435 0.16451 16.809 16.741 16.906 3.3734 32 19 2 0 0 0 0.72333 1 332 332 1.8442 0 1 38229 16953 7953 10882 10888 20578 20578 0.1554572122212221 KKKKAELR 8 Unmodified _KKKKAELR_ 0 0 0 HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 500.834926 999.655299 -0.32333 -0.00016194 -0.11101 -5.5598E-05 -0.43434 -0.00021753 500.83492901667336 13.325 0.33218 16.782 16.682 17.015 3.457 -0.0086464 -8.5703E-05 NaN 1.8442 64 38 3 NaN NaN NaN NaN 0 NaN NaN 0 70685 16954 7953 10882 10888 0.1554572122212221 KKKKAELR 8 Unmodified _KKKKAELR_ 0 0 0 HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|55|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 500.834926 999.655299 -0.1813 -9.0804E-05 -0.15907 -7.967E-05 -0.34038 -0.00017047 500.8348473988973 13.394 0.21953 16.782 16.709 16.929 3.388 -0.008956 -0.00013385 NaN 1.8442 45 26 3 NaN NaN NaN NaN 0 NaN NaN 0 39659 16955 7953 10882 10888 0.1554572122212221 KKKKEILSF 9 Unmodified _KKKKEILSF_ 0 0 0 L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.8583984375 2 560.858067 1119.70158 0.60872 0.0003414 -0.81026 -0.00045444 -0.20155 -0.00011304 560.857534544485 56.313 0.14208 59.846 59.798 59.94 3.5333 19 11 2 0 0 0 0.48643 1 12081 12081 2.0598 0 1 108860 16956 10013 10883 10889 20579 20579 0.1465174133356868 KKKKEILSF 9 Unmodified _KKKKEILSF_ 0 0 0 L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 560.858067 1119.70158 0.53672 0.00030102 -0.4969 -0.00027869 0.039821 2.2334E-05 560.8578800334541 56.573 0.061157 60.075 60.043 60.104 3.5014 0.18388 6.3643E-05 NaN 2.0598 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 95545 16957 10013 10883 10889 0.1465174133356868 KKKKEILSF 9 Unmodified _KKKKEILSF_ 0 0 0 L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|63|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 560.858067 1119.70158 0.31947 0.00017918 -0.31287 -0.00017548 0.0065975 3.7003E-06 560.8578739213355 56.209 0.13176 59.751 59.718 59.85 3.5427 -0.13922 0.00027007 NaN 2.0598 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 102220 16958 10013 10883 10889 0.1465174133356868 KKKKELHRRAR 11 Unmodified _KKKKELHRRAR_ 0 0 0 REV__AluSx_dup45892|chr7:102529709-102529890:-|1.1096033714822895|0.0617504769760288|4.17|136.0|3|1|sense REV__AluSx_dup45892|chr7:102529709-102529890:-|1.1096033714822895|0.0617504769760288|4.17|136.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 483.7186279296875 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 66.08 1 66.08 65.58 66.58 0 0 0 0 0.38417 1 14973 14973 0.094841 0 1 + 16959 17142 10884 10890 20580 20580 0.20993100921850782 KKKKFLSHT 9 Unmodified _KKKKFLSHT_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|41|3|sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|41|3|sense MSMS UPN48_class_I_Rep_3 7 558.8480224609375 2 558.848033 1115.68151 NaN NaN NaN NaN NaN NaN NaN 115.63 1 119.27 118.77 119.77 3.6433 0 0 0 0.4007 1 27517 27517 0.52476 0 1 + 16960 26507 10885 10891 20581 20581 0.1282999039360675 KKKKILFFPSL 11 Unmodified _KKKKILFFPSL_ 0 0 0 REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 450.62957763671875 3 450.295353 1347.86423 0.22862 0.00010295 0.41636 0.00018749 0.64499 0.00029043 450.295411924893 53.69 0.67905 57.3 57.003 57.682 3.6098 57 49 2 0 0 0 0.68491 1 11309 11309 0.08335 0 1 63262 + 16961 23073 10886 10892 20582 20582 0.2042112473557154 KKKKKAYLY 9 Unmodified _KKKKKAYLY_ 0 0 0 REV__L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|35|3|sense REV__L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 585.7100219726562 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 31.516 1 34.985 34.485 35.485 3.4691 0 0 0 0.40038 1 5344 5344 0.6015 0.076735 1 + 16962 25255 10887 10893 20583 20583 0.15559734087514698 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.3798217773438 2 537.3795 1072.74445 0.35258 0.00018947 0.79567 0.00042758 1.1483 0.00061705 537.3798457084807 108.82 0.24175 108.82 108.68 108.92 0 37 21 2 0 0 0 0.5015 1 26609 26609 0.45834 0 1 8129900 + 16963 26589 10888 10894 20584 20584 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 537.379638671875 2 537.3795 1072.74445 0.50568 0.00027174 0.11915 6.4027E-05 0.62483 0.00033577 537.3794075926077 108.27 0.27951 111.91 111.86 112.14 3.6355 78 27 3 0 0 0 0.5015 1 26639 26639 0.45834 0 1 9367000 + 16964 26589 10888 10894 20585 20585 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 537.3799438476562 2 537.3795 1072.74445 0.57801 0.00031061 0.098689 5.3033E-05 0.6767 0.00036365 537.379423834574 108.42 0.14461 111.95 111.9 112.05 3.5333 32 13 4 0 0 0 0.5015 1 26319 26319 0.45834 0 1 8150500 + 16965 26589 10888 10894 20586 20586 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 537.3795776367188 2 537.3795 1072.74445 0.48202 0.00025903 0.4405 0.00023671 0.92252 0.00049574 537.3796715735638 108.52 0.14894 112.05 111.94 112.09 3.5382 25 15 3 0 0 0 0.5015 1 26564 26564 0.45834 0 1 3436600 + 16966 26589 10888 10894 20587 20587 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.3800048828125 2 537.3795 1072.74445 0.35196 0.00018914 0.26956 0.00014486 0.62152 0.00033399 537.3794968508014 108.41 0.1724 112.04 111.95 112.12 3.6313 36 13 4 0 0 0 0.5015 1 26254 26254 0.45834 0 1 6333400 + 16967 26589 10888 10894 20588 20588 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.3800659179688 2 537.3795 1072.74445 0.5711 0.0003069 0.23548 0.00012654 0.80658 0.00043344 537.3795322058551 108.41 0.12906 112.08 112.05 112.18 3.6751 19 11 2 0 0 0 0.5015 1 25680 25680 0.45834 0 1 8071800 + 16968 26589 10888 10894 20589 20589 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 537.3795 1072.74445 0.57801 0.00031061 0.098689 5.3033E-05 0.6767 0.00036365 537.379423834574 108.42 0.14461 111.95 111.9 112.05 3.5333 -0.055121 -7.8595E-05 NaN 0.45834 32 13 4 NaN NaN NaN NaN 0 NaN NaN 0 8150500 + 16969 26589 10888 10894 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 537.3795 1072.74445 0.48202 0.00025903 0.4405 0.00023671 0.92252 0.00049574 537.3796715735638 108.52 0.14894 112.05 111.94 112.09 3.5382 0.047619 0.00028877 NaN 0.45834 25 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3436600 + 16970 26589 10888 10894 0.21098556181664208 KKKKKGTKK 9 Unmodified _KKKKKGTKK_ 0 0 0 REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense REV__L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 537.3795 1072.74445 0.5711 0.0003069 0.23548 0.00012654 0.80658 0.00043344 537.3795322058551 108.41 0.12906 112.08 112.05 112.18 3.6751 0.072977 6.8425E-05 NaN 0.45834 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 8071800 + 16971 26589 10888 10894 0.21098556181664208 KKKKKKEKA 9 Unmodified _KKKKKKEKA_ 0 0 0 ENST00000493903.1_1_13:28003431-28003479:+|nuORF;L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|23|2|sense;L1MC1_dup7397|chr9:77778243-77779974:+|3.119288644205006|0.0406064747740536|6.26|151.0|46|2|sense REV__nc|ENSG00000127616|P51532-5|SMARCA4 REV__nc|ENSG00000127616|P51532-5|SMARCA4 MSMS UPN48_class_I_Rep_2 6 558.3845825195312 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.14 1 116.8 116.3 117.3 3.6648 0 0 0 0.40098 1 26987 26987 0.45834 0 1 + 16972 18882 10889 10895 20590 20590 0.20222538836083004 KKKKKKKA 8 Unmodified _KKKKKKKA_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|125|2|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;ENSG00000058063.16,ATP11B,chr3,+,I31.1,182905920,182908458|29|10.55|1|intron;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|108|3|sense;L1MC3_dup2947|chr4:53103305-53104715:+|1.3349911595858497|0.0095536546311907|7.13|151.0|20|2|sense;L1M2a_dup315|chr11:78244417-78245062:+|1.0059107103777063|0.0193116297336238|5.7|151.0|4|1|sense;ENST00000374723.5_1_9:108152705-108152840:+|nuORF;AluSc5_dup2357|chr6:37937375-37937683:+|1.084791176850963|0.0178369695725773|5.93|151.0|4|1|sense;L1MB5_dup5717|chr10:114851214-114852065:-|1.2277754734251067|0.0530766954713818|4.53|151.0|46|2|anti-sense;L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|34|1|anti-sense;L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|15|1|sense;L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|30|1|sense;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|79|3|sense;L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|87|2|sense;AluJr_dup19139|chr4:82366880-82367159:-|3.877368808239618|0.3936591524984527|3.3|151.0|9|3|sense;L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|57|2|sense;AluJr_dup53087|chr11:85963778-85963979:-|1.1924661245478567|0.2120056142648256|2.49|151.0|6|3|sense;L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|1|1|sense;L1PREC2_dup658|chr2:62767854-62771176:+|1.1357699653157147|0.0833457812901871|3.77|151.0|58|2|sense;L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|21|1|sense;L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|16|2|sense;L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|69|3|sense;L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|96|1|anti-sense;AluSx4_dup3924|chr6:73514694-73514933:-|1.3250649595350008|0.1795689994186786|2.88|151.0|3|1|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|127|3|anti-sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense;ENSG00000130826|ENST00000369550|DKC1;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|154|3|sense;L1ME4b_dup15286|chr12:101882566-101883181:+|1.1112800411118051|0.0086105037260287|7.01|151.0|45|3|anti-sense;L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|79|2|sense;L1PA6_dup2751|chr7:37153167-37159311:+|3.454159174407832|0.0393138219556515|6.46|151.0|141|3|sense;L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|151|3|sense ENSG00000127616|ENST00000344626|SMARCA4;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;REV__ENSG00000183354|ENST00000399933|KIAA2026;REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense;REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense;ENSG00000130826|ENST00000369550|DKC1;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|154|3|sense;REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense ENSG00000127616|ENST00000344626|SMARCA4 MSMS UPN47_class_I_Rep_2 3 493.86248779296875 2 493.863486 985.71242 NaN NaN NaN NaN NaN NaN NaN 75.676 1 78.997 78.497 79.497 3.3216 0 0 0 0.40798 1 18697 18697 0 0 1 16973 2570;392;20582;286;20784;23294;2683;27622;9083;26194;14857 10890 10896 20591 20591 0.21899188498503008 KKKKKKKAA 9 Unmodified _KKKKKKKAA_ 0 0 0 AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|127|3|anti-sense AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 529.3804321289062 2 529.382043 1056.74953 NaN NaN NaN NaN NaN NaN NaN 47.47 1 47.47 46.97 47.97 0 0 0 0 0.4029 1 9819 9819 0 0 1 16974 392;20582 10891 10897 20592 20592 0.22342860044273039 KKKKKKKAA 9 Unmodified _KKKKKKKAA_ 0 0 0 AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|127|3|anti-sense AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 529.3804321289062 2 529.382043 1056.74953 NaN NaN NaN NaN NaN NaN NaN 65.991 1 65.991 65.491 66.491 0 0 0 0 0.4029 1 14947 14947 0 0 1 16975 392;20582 10891 10897 20593 20593 0.22342860044273039 KKKKKKKAA 9 Unmodified _KKKKKKKAA_ 0 0 0 AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|127|3|anti-sense AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 529.2860107421875 2 529.382043 1056.74953 NaN NaN NaN NaN NaN NaN NaN 72.419 1 72.419 71.919 72.919 0 0 0 0 0.4029 1 16737 16737 0 0 1 16976 392;20582 10891 10897 20594 20594 0.22342860044273039 KKKKKKKAA 9 Unmodified _KKKKKKKAA_ 0 0 0 AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|127|3|anti-sense AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 529.3804931640625 2 529.382043 1056.74953 NaN NaN NaN NaN NaN NaN NaN 80.288 1 80.288 79.788 80.788 0 0 0 0 0.4029 1 18907 18907 0 0 1 16977 392;20582 10891 10897 20595 20595 0.22342860044273039 KKKKKKKAA 9 Unmodified _KKKKKKKAA_ 0 0 0 AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|127|3|anti-sense AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 528.818359375 2 529.382043 1056.74953 0.28854 0.00015275 -4.3606 -0.0023084 -4.072 -0.0021557 529.3793572708395 70.228 0.03067 70.228 70.206 70.237 0 4 2 2 0 0 0 0.12551 1 16124 16124 0 0 1 36603 16978 392;20582 10891 10897 20596 20596 0.22342860044273039 KKKKKKKARA 10 Unmodified _KKKKKKKARA_ 0 0 0 REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 405.29107666015625 3 405.290825 1212.85064 NaN NaN NaN NaN NaN NaN NaN 90.774 1 90.774 90.274 91.274 0 0 0 0 0.53105 1 21895 21895 0 0 1 + 16979 26194 10892 10898 20597 20597 0.25273311746991567 KKKKKKKARA 10 Unmodified _KKKKKKKARA_ 0 0 0 REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 405.2907409667969 3 405.290825 1212.85064 NaN NaN NaN NaN NaN NaN NaN 87.726 1 91.453 90.953 91.953 3.7279 0 0 0 0.53105 1 20877 20877 0 0 1 + 16980 26194 10892 10898 20598 20598 0.25273311746991567 KKKKKKKARA 10 Unmodified _KKKKKKKARA_ 0 0 0 REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 405.2910461425781 3 405.290825 1212.85064 NaN NaN NaN NaN NaN NaN NaN 87.695 1 91.489 90.989 91.989 3.7938 0 0 0 0.53105 1 20809 20809 0 0 1 + 16981 26194 10892 10898 20599 20599 0.25273311746991567 KKKKKKKGKK 10 Unmodified _KKKKKKKGKK_ 0 0 0 AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 614.9530029296875 2 614.950624 1227.8867 NaN NaN NaN NaN NaN NaN NaN 48.636 1 52.16 51.66 52.66 3.5239 0 0 0 0.53105 1 9743 9743 0 0 1 16982 368 10893 10899 20600 20600 0.28186768923842465 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.498 1 23.498 22.998 23.998 0 0 0 0 0.53105 1 2957 2957 0 0 1 16983 4690 10894 10900 20601 20601 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.3002014160156 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.696 1 25.696 25.196 26.196 0 0 0 0 0.53105 1 3565 3565 0 0 1 16984 4690 10894 10900 20602 20602 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 73.439 1 73.439 72.939 73.939 0 0 0 0 0.53105 1 17021 17021 0 0 1 16985 4690 10894 10900 20603 20603 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 74.609 1 74.609 74.109 75.109 0 0 0 0 0.53105 1 17314 17314 0 0 1 16986 4690 10894 10900 20604 20604 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 74.795 1 74.795 74.295 75.295 0 0 0 0 0.53105 1 17363 17363 0 0 1 16987 4690 10894 10900 20605 20605 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 75.268 1 75.268 74.768 75.768 0 0 0 0 0.53105 1 17491 17491 0 0 1 16988 4690 10894 10900 20606 20606 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2994384765625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 75.458 1 75.458 74.958 75.958 0 0 0 0 0.53105 1 17546 17546 0 0 1 16989 4690 10894 10900 20607 20607 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 81.484 1 81.484 80.984 81.984 0 0 0 0 0.53105 1 19245 19245 0 0 1 16990 4690 10894 10900 20608 20608 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 89.282 1 89.282 88.782 89.782 0 0 0 0 0.53105 1 21473 21473 0 0 1 16991 4690 10894 10900 20609 20609 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 89.91 1 89.91 89.41 90.41 0 0 0 0 0.53105 1 21655 21655 0 0 1 16992 4690 10894 10900 20610 20610 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 96.913 1 96.913 96.413 97.413 0 0 0 0 0.53105 1 23573 23573 0 0 1 16993 4690 10894 10900 20611 20611 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 99.577 1 99.577 99.077 100.08 0 0 0 0 0.53105 1 24263 24263 0 0 1 16994 4690 10894 10900 20612 20612 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2993469238281 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.02 1 111.02 110.52 111.52 0 0 0 0 0.53105 1 27358 27358 0 0 1 16995 4690 10894 10900 20613 20613 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.16 1 111.16 110.66 111.66 0 0 0 0 0.53105 1 27394 27394 0 0 1 16996 4690 10894 10900 20614 20614 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.47 1 111.47 110.97 111.97 0 0 0 0 0.53105 1 27485 27485 0 0 1 16997 4690 10894 10900 20615 20615 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.09 1 112.09 111.59 112.59 0 0 0 0 0.53105 1 27666 27666 0 0 1 16998 4690 10894 10900 20616 20616 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.01 1 113.01 112.51 113.51 0 0 0 0 0.53105 1 27907 27907 0 0 1 16999 4690 10894 10900 20617 20617 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.43 1 113.43 112.93 113.93 0 0 0 0 0.53105 1 28017 28017 0 0 1 17000 4690 10894 10900 20618 20618 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 116.74 1 116.74 116.24 117.24 0 0 0 0 0.53105 1 28911 28911 0 0 1 17001 4690 10894 10900 20619 20619 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 117.54 1 117.54 117.04 118.04 0 0 0 0 0.53105 1 29139 29139 0 0 1 17002 4690 10894 10900 20620 20620 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 117.8 1 117.8 117.3 118.3 0 0 0 0 0.53105 1 29216 29216 0 0 1 17003 4690 10894 10900 20621 20621 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 118.26 1 118.26 117.76 118.76 0 0 0 0 0.53105 1 29349 29349 0 0 1 17004 4690 10894 10900 20622 20622 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 118.67 1 118.67 118.17 119.17 0 0 0 0 0.53105 1 29465 29465 0 0 1 17005 4690 10894 10900 20623 20623 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 119.48 1 119.48 118.98 119.98 0 0 0 0 0.53105 1 29697 29697 0 0 1 17006 4690 10894 10900 20624 20624 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 119.66 1 119.66 119.16 120.16 0 0 0 0 0.53105 1 29751 29751 0 0 1 17007 4690 10894 10900 20625 20625 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 119.96 1 119.96 119.46 120.46 0 0 0 0 0.53105 1 29840 29840 0 0 1 17008 4690 10894 10900 20626 20626 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.573 1 21.123 20.623 21.623 3.5504 0 0 0 0.53105 1 1331 1331 0 0 1 17009 4690 10894 10900 20627 20627 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29925537109375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.79 1 21.34 20.84 21.84 3.5504 0 0 0 0.53105 1 1384 1384 0 0 1 17010 4690 10894 10900 20628 20628 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.206 1 21.756 21.256 22.256 3.5504 0 0 0 0.53105 1 1481 1481 0 0 1 17011 4690 10894 10900 20629 20629 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.332 1 21.912 21.412 22.412 3.5806 0 0 0 0.53105 1 1516 1516 0 0 1 17012 4690 10894 10900 20630 20630 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29937744140625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.929 1 22.51 22.01 23.01 3.5806 0 0 0 0.53105 1 1665 1665 0 0 1 17013 4690 10894 10900 20631 20631 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.071 1 22.652 22.152 23.152 3.5806 0 0 0 0.53105 1 1698 1698 0 0 1 17014 4690 10894 10900 20632 20632 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29925537109375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.463 1 23.075 22.575 23.575 3.6118 0 0 0 0.53105 1 1795 1795 0 0 1 17015 4690 10894 10900 20633 20633 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.698 1 23.309 22.809 23.809 3.6118 0 0 0 0.53105 1 1858 1858 0 0 1 17016 4690 10894 10900 20634 20634 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2994079589844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.956 1 23.568 23.068 24.068 3.6118 0 0 0 0.53105 1 1923 1923 0 0 1 17017 4690 10894 10900 20635 20635 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.709 1 24.353 23.853 24.853 3.6436 0 0 0 0.53105 1 2128 2128 0 0 1 17018 4690 10894 10900 20636 20636 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.893 1 24.536 24.036 25.036 3.6436 0 0 0 0.53105 1 2178 2178 0 0 1 17019 4690 10894 10900 20637 20637 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.115 1 24.759 24.259 25.259 3.6436 0 0 0 0.53105 1 2240 2240 0 0 1 17020 4690 10894 10900 20638 20638 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.256 1 24.899 24.399 25.399 3.6436 0 0 0 0.53105 1 2278 2278 0 0 1 17021 4690 10894 10900 20639 20639 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.474 1 25.149 24.649 25.649 3.6749 0 0 0 0.53105 1 2336 2336 0 0 1 17022 4690 10894 10900 20640 20640 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.596 1 25.271 24.771 25.771 3.6749 0 0 0 0.53105 1 2367 2367 0 0 1 17023 4690 10894 10900 20641 20641 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.758 1 25.433 24.933 25.933 3.6749 0 0 0 0.53105 1 2413 2413 0 0 1 17024 4690 10894 10900 20642 20642 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.96 1 25.634 25.134 26.134 3.6749 0 0 0 0.53105 1 2471 2471 0 0 1 17025 4690 10894 10900 20643 20643 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.211 1 25.886 25.386 26.386 3.6749 0 0 0 0.53105 1 2544 2544 0 0 1 17026 4690 10894 10900 20644 20644 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.3002624511719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.486 1 28.216 27.716 28.716 3.7298 0 0 0 0.53105 1 3208 3208 0 0 1 17027 4690 10894 10900 20645 20645 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.3002014160156 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.135 1 28.884 28.384 29.384 3.7495 0 0 0 0.53105 1 3399 3399 0 0 1 17028 4690 10894 10900 20646 20646 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.772 1 29.535 29.035 30.035 3.7624 0 0 0 0.53105 1 3589 3589 0 0 1 17029 4690 10894 10900 20647 20647 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.945 1 29.708 29.208 30.208 3.7624 0 0 0 0.53105 1 3639 3639 0 0 1 17030 4690 10894 10900 20648 20648 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.248 1 30.01 29.51 30.51 3.7624 0 0 0 0.53105 1 3728 3728 0 0 1 17031 4690 10894 10900 20649 20649 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29925537109375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.543 1 30.306 29.806 30.806 3.7624 0 0 0 0.53105 1 3812 3812 0 0 1 17032 4690 10894 10900 20650 20650 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.716 1 30.483 29.983 30.983 3.7662 0 0 0 0.53105 1 3863 3863 0 0 1 17033 4690 10894 10900 20651 20651 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2994079589844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.15 1 30.916 30.416 31.416 3.7662 0 0 0 0.53105 1 3993 3993 0 0 1 17034 4690 10894 10900 20652 20652 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.8 1 31.566 31.066 32.066 3.7662 0 0 0 0.53105 1 4191 4191 0 0 1 17035 4690 10894 10900 20653 20653 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.078 1 31.845 31.345 32.345 3.7662 0 0 0 0.53105 1 4272 4272 0 0 1 17036 4690 10894 10900 20654 20654 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.059 1 32.817 32.317 33.317 3.7578 0 0 0 0.53105 1 4563 4563 0 0 1 17037 4690 10894 10900 20655 20655 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 32.316 1 36.03 35.53 36.53 3.7131 0 0 0 0.53105 1 5546 5546 0 0 1 17038 4690 10894 10900 20656 20656 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.061 1 38.747 38.247 39.247 3.6859 0 0 0 0.53105 1 6386 6386 0 0 1 17039 4690 10894 10900 20657 20657 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 39.954 1 43.621 43.121 44.121 3.6668 0 0 0 0.53105 1 7870 7870 0 0 1 17040 4690 10894 10900 20658 20658 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 41.148 1 44.82 44.32 45.32 3.6719 0 0 0 0.53105 1 8231 8231 0 0 1 17041 4690 10894 10900 20659 20659 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 41.715 1 45.394 44.894 45.894 3.6792 0 0 0 0.53105 1 8405 8405 0 0 1 17042 4690 10894 10900 20660 20660 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 41.897 1 45.576 45.076 46.076 3.6792 0 0 0 0.53105 1 8461 8461 0 0 1 17043 4690 10894 10900 20661 20661 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 48.829 1 52.511 52.011 53.011 3.6819 0 0 0 0.53105 1 10569 10569 0 0 1 17044 4690 10894 10900 20662 20662 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 49.084 1 52.743 52.243 53.243 3.6592 0 0 0 0.53105 1 10648 10648 0.15932 0 1 17045 4690 10894 10900 20663 20663 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 50.007 1 53.635 53.135 54.135 3.6285 0 0 0 0.53105 1 10928 10928 0.15932 0 1 17046 4690 10894 10900 20664 20664 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 54.076 1 57.604 57.104 58.104 3.5278 0 0 0 0.53105 1 12169 12169 0 0 1 17047 4690 10894 10900 20665 20665 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.27313232421875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 56.361 1 59.818 59.318 60.318 3.4572 0 0 0 0.53105 1 12866 12866 0 0 1 17048 4690 10894 10900 20666 20666 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.66 1 67.016 66.516 67.516 3.3557 0 0 0 0.53105 1 15076 15076 0 0 1 17049 4690 10894 10900 20667 20667 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.214 1 67.57 67.07 68.07 3.3557 0 0 0 0.53105 1 15245 15245 0 0 1 17050 4690 10894 10900 20668 20668 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.822 1 68.177 67.677 68.677 3.3557 0 0 0 0.53105 1 15423 15423 0 0 1 17051 4690 10894 10900 20669 20669 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 66.118 1 69.475 68.975 69.975 3.3576 0 0 0 0.53105 1 15817 15817 0 0 1 17052 4690 10894 10900 20670 20670 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 66.793 1 70.154 69.654 70.654 3.3611 0 0 0 0.53105 1 16023 16023 0 0 1 17053 4690 10894 10900 20671 20671 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 66.928 1 70.289 69.789 70.789 3.3611 0 0 0 0.53105 1 16064 16064 0 0 1 17054 4690 10894 10900 20672 20672 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.30010986328125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 67.82 1 71.184 70.684 71.684 3.3646 0 0 0 0.53105 1 16333 16333 0 0 1 17055 4690 10894 10900 20673 20673 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 68.146 1 71.511 71.011 72.011 3.3646 0 0 0 0.53105 1 16431 16431 0 0 1 17056 4690 10894 10900 20674 20674 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2731628417969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 69.687 1 73.055 72.555 73.555 3.3678 0 0 0 0.53105 1 16898 16898 0 0 1 17057 4690 10894 10900 20675 20675 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.3000793457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 84.26 1 87.826 87.326 88.326 3.5655 0 0 0 0.53105 1 21083 21083 0 0 1 17058 4690 10894 10900 20676 20676 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 87.015 1 90.652 90.152 91.152 3.6372 0 0 0 0.53105 1 21738 21738 0 0 1 17059 4690 10894 10900 20677 20677 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 87.908 1 91.564 91.064 92.064 3.6563 0 0 0 0.53105 1 21976 21976 0 0 1 17060 4690 10894 10900 20678 20678 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.72 1 114.31 113.81 114.81 3.5835 0 0 0 0.53105 1 27299 27299 0 0 1 17061 4690 10894 10900 20679 20679 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.97 1 114.55 114.05 115.05 3.5835 0 0 0 0.53105 1 27362 27362 0 0 1 17062 4690 10894 10900 20680 20680 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.1 1 114.67 114.17 115.17 3.572 0 0 0 0.53105 1 27395 27395 0 0 1 17063 4690 10894 10900 20681 20681 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2993469238281 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.84 1 115.41 114.91 115.91 3.572 0 0 0 0.53105 1 27590 27590 0 0 1 17064 4690 10894 10900 20682 20682 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.97 1 115.54 115.04 116.04 3.572 0 0 0 0.53105 1 27625 27625 0 0 1 17065 4690 10894 10900 20683 20683 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112 1 115.58 115.08 116.08 3.572 0 0 0 0.53105 1 27635 27635 0 0 1 17066 4690 10894 10900 20684 20684 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.75 1 116.32 115.82 116.82 3.572 0 0 0 0.53105 1 27803 27803 0 0 1 17067 4690 10894 10900 20685 20685 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.89 1 116.46 115.96 116.96 3.572 0 0 0 0.53105 1 27842 27842 0 0 1 17068 4690 10894 10900 20686 20686 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.28 1 116.85 116.35 117.35 3.572 0 0 0 0.53105 1 27947 27947 0 0 1 17069 4690 10894 10900 20687 20687 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.53 1 117.11 116.61 117.61 3.572 0 0 0 0.53105 1 28017 28017 0 0 1 17070 4690 10894 10900 20688 20688 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.69 1 117.26 116.76 117.76 3.572 0 0 0 0.53105 1 28065 28065 0 0 1 17071 4690 10894 10900 20689 20689 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.82 1 117.39 116.89 117.89 3.572 0 0 0 0.53105 1 28102 28102 0 0 1 17072 4690 10894 10900 20690 20690 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.22 1 117.8 117.3 118.3 3.5809 0 0 0 0.53105 1 28217 28217 0 0 1 17073 4690 10894 10900 20691 20691 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.38 1 117.96 117.46 118.46 3.5809 0 0 0 0.53105 1 28262 28262 0 0 1 17074 4690 10894 10900 20692 20692 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.95 1 118.53 118.03 119.03 3.5809 0 0 0 0.53105 1 28421 28421 0 0 1 17075 4690 10894 10900 20693 20693 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 115.1 1 118.68 118.18 119.18 3.5809 0 0 0 0.53105 1 28465 28465 0 0 1 17076 4690 10894 10900 20694 20694 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 115.47 1 119.06 118.56 119.56 3.5943 0 0 0 0.53105 1 28571 28571 0.15932 0 1 17077 4690 10894 10900 20695 20695 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 116.44 1 120.04 119.54 120.54 3.6036 0 0 0 0.53105 1 28836 28836 0 0 1 17078 4690 10894 10900 20696 20696 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 117.26 1 120.87 120.37 121.37 3.6036 0 0 0 0.53105 1 29065 29065 0 0 1 17079 4690 10894 10900 20697 20697 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 16.478 1 19.865 19.365 20.365 3.3864 0 0 0 0.53105 1 1061 1061 0 0 1 17080 4690 10894 10900 20698 20698 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 16.949 1 20.336 19.836 20.836 3.3864 0 0 0 0.53105 1 1177 1177 0 0 1 17081 4690 10894 10900 20699 20699 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.885 1 21.272 20.772 21.772 3.387 0 0 0 0.53105 1 1417 1417 0 0 1 17082 4690 10894 10900 20700 20700 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3001708984375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.664 1 22.054 21.554 22.554 3.3898 0 0 0 0.53105 1 1618 1618 0 0 1 17083 4690 10894 10900 20701 20701 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2994079589844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.505 1 22.901 22.401 23.401 3.3963 0 0 0 0.53105 1 1849 1849 0 0 1 17084 4690 10894 10900 20702 20702 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2994079589844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.644 1 23.04 22.54 23.54 3.3963 0 0 0 0.53105 1 1891 1891 0 0 1 17085 4690 10894 10900 20703 20703 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.972 1 23.368 22.868 23.868 3.3963 0 0 0 0.53105 1 1987 1987 0 0 1 17086 4690 10894 10900 20704 20704 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.119 1 23.515 23.015 24.015 3.3963 0 0 0 0.53105 1 2030 2030 0 0 1 17087 4690 10894 10900 20705 20705 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2992858886719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.287 1 23.695 23.195 24.195 3.4074 0 0 0 0.53105 1 2077 2077 0 0 1 17088 4690 10894 10900 20706 20706 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.108 1 25.532 25.032 26.032 3.4241 0 0 0 0.53105 1 2572 2572 0 0 1 17089 4690 10894 10900 20707 20707 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.259 1 25.683 25.183 26.183 3.4241 0 0 0 0.53105 1 2610 2610 0 0 1 17090 4690 10894 10900 20708 20708 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.393 1 25.817 25.317 26.317 3.4241 0 0 0 0.53105 1 2651 2651 0 0 1 17091 4690 10894 10900 20709 20709 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3000793457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.55 1 25.995 25.495 26.495 3.4447 0 0 0 0.53105 1 2695 2695 0 0 1 17092 4690 10894 10900 20710 20710 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.519 1 27.984 27.484 28.484 3.4655 0 0 0 0.53105 1 3262 3262 0 0 1 17093 4690 10894 10900 20711 20711 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.659 1 28.142 27.642 28.642 3.483 0 0 0 0.53105 1 3304 3304 0 0 1 17094 4690 10894 10900 20712 20712 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.105 1 28.588 28.088 29.088 3.483 0 0 0 0.53105 1 3437 3437 0 0 1 17095 4690 10894 10900 20713 20713 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.643 1 29.126 28.626 29.626 3.483 0 0 0 0.53105 1 3592 3592 0 0 1 17096 4690 10894 10900 20714 20714 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.666 1 30.16 29.66 30.66 3.4945 0 0 0 0.53105 1 3892 3892 0 0 1 17097 4690 10894 10900 20715 20715 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.182 1 30.68 30.18 31.18 3.4986 0 0 0 0.53105 1 4043 4043 0 0 1 17098 4690 10894 10900 20716 20716 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.449 1 30.948 30.448 31.448 3.4986 0 0 0 0.53105 1 4122 4122 0 0 1 17099 4690 10894 10900 20717 20717 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.628 1 31.127 30.627 31.627 3.4986 0 0 0 0.53105 1 4176 4176 0 0 1 17100 4690 10894 10900 20718 20718 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.761 1 31.26 30.76 31.76 3.4986 0 0 0 0.53105 1 4216 4216 0 0 1 17101 4690 10894 10900 20719 20719 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29925537109375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.899 1 31.398 30.898 31.898 3.4986 0 0 0 0.53105 1 4254 4254 0 0 1 17102 4690 10894 10900 20720 20720 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3001708984375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.04 1 31.539 31.039 32.039 3.4986 0 0 0 0.53105 1 4295 4295 0 0 1 17103 4690 10894 10900 20721 20721 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.169 1 31.668 31.168 32.168 3.4986 0 0 0 0.53105 1 4334 4334 0 0 1 17104 4690 10894 10900 20722 20722 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.705 1 32.204 31.704 32.704 3.4986 0 0 0 0.53105 1 4492 4492 0 0 1 17105 4690 10894 10900 20723 20723 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.941 1 32.433 31.933 32.933 3.4923 0 0 0 0.53105 1 4564 4564 0 0 1 17106 4690 10894 10900 20724 20724 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.187 1 32.679 32.179 33.179 3.4923 0 0 0 0.53105 1 4638 4638 0 0 1 17107 4690 10894 10900 20725 20725 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3002014160156 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.347 1 32.84 32.34 33.34 3.4923 0 0 0 0.53105 1 4686 4686 0 0 1 17108 4690 10894 10900 20726 20726 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.587 1 33.079 32.579 33.579 3.4923 0 0 0 0.53105 1 4759 4759 0 0 1 17109 4690 10894 10900 20727 20727 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.30023193359375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.737 1 33.229 32.729 33.729 3.4923 0 0 0 0.53105 1 4804 4804 0 0 1 17110 4690 10894 10900 20728 20728 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.927 1 33.419 32.919 33.919 3.4923 0 0 0 0.53105 1 4862 4862 0 0 1 17111 4690 10894 10900 20729 20729 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.053 1 33.535 33.035 34.035 3.4821 0 0 0 0.53105 1 4899 4899 0 0 1 17112 4690 10894 10900 20730 20730 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.306 1 34.775 34.275 35.275 3.4691 0 0 0 0.53105 1 5282 5282 0 0 1 17113 4690 10894 10900 20731 20731 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 33.044 1 36.499 35.999 36.999 3.4547 0 0 0 0.53105 1 5803 5803 0 0 1 17114 4690 10894 10900 20732 20732 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 34.643 1 38.068 37.568 38.568 3.4253 0 0 0 0.53105 1 6292 6292 0 0 1 17115 4690 10894 10900 20733 20733 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.598 1 39.009 38.509 39.509 3.4114 0 0 0 0.53105 1 6583 6583 0 0 1 17116 4690 10894 10900 20734 20734 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2736511230469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 40.78 1 44.151 43.651 44.651 3.3712 0 0 0 0.53105 1 8155 8155 0 0 1 17117 4690 10894 10900 20735 20735 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 42.749 1 46.111 45.611 46.611 3.3611 0 0 0 0.53105 1 8749 8749 0 0 1 17118 4690 10894 10900 20736 20736 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 43.957 1 47.315 46.815 47.815 3.358 0 0 0 0.53105 1 9119 9119 0 0 1 17119 4690 10894 10900 20737 20737 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 44.676 1 48.031 47.531 48.531 3.3556 0 0 0 0.53105 1 9340 9340 0 0 1 17120 4690 10894 10900 20738 20738 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 51.109 1 54.447 53.947 54.947 3.3386 0 0 0 0.53105 1 11293 11293 0 0 1 17121 4690 10894 10900 20739 20739 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2738342285156 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 53.345 1 56.671 56.171 57.171 3.3266 0 0 0 0.53105 1 11971 11971 0 0 1 17122 4690 10894 10900 20740 20740 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 53.934 1 57.253 56.753 57.753 3.3187 0 0 0 0.53105 1 12153 12153 0 0 1 17123 4690 10894 10900 20741 20741 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 54.317 1 57.636 57.136 58.136 3.3187 0 0 0 0.53105 1 12270 12270 0 0 1 17124 4690 10894 10900 20742 20742 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.312 1 66.567 66.067 67.067 3.2558 0 0 0 0.53105 1 15013 15013 0 0 1 17125 4690 10894 10900 20743 20743 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3007507324219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.503 1 66.759 66.259 67.259 3.2558 0 0 0 0.53105 1 15070 15070 0 0 1 17126 4690 10894 10900 20744 20744 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.386 1 67.642 67.142 68.142 3.2556 0 0 0 0.53105 1 15335 15335 0 0 1 17127 4690 10894 10900 20745 20745 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 67.07 1 70.333 69.833 70.833 3.2636 0 0 0 0.53105 1 16153 16153 0 0 1 17128 4690 10894 10900 20746 20746 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 70.768 1 74.051 73.551 74.551 3.2828 0 0 0 0.53105 1 17261 17261 0 0 1 17129 4690 10894 10900 20747 20747 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.30029296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 70.886 1 74.169 73.669 74.669 3.2828 0 0 0 0.53105 1 17297 17297 0 0 1 17130 4690 10894 10900 20748 20748 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 72.233 1 75.524 75.024 76.024 3.2915 0 0 0 0.53105 1 17697 17697 0 0 1 17131 4690 10894 10900 20749 20749 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 75.199 1 78.512 78.012 79.012 3.3127 0 0 0 0.53105 1 18556 18556 0 0 1 17132 4690 10894 10900 20750 20750 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 78.035 1 81.377 80.877 81.877 3.3428 0 0 0 0.53105 1 19380 19380 0 0 1 17133 4690 10894 10900 20751 20751 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.30078125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 108.7 1 112.24 111.74 112.74 3.5333 0 0 0 0.53105 1 26396 26396 0 0 1 17134 4690 10894 10900 20752 20752 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3001708984375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.37 1 113.9 113.4 114.4 3.5271 0 0 0 0.53105 1 26869 26869 0 0 1 17135 4690 10894 10900 20753 20753 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.09 1 115.61 115.11 116.11 3.5226 0 0 0 0.53105 1 27304 27304 0 0 1 17136 4690 10894 10900 20754 20754 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.39 1 116.91 116.41 117.41 3.5163 0 0 0 0.53105 1 27580 27580 0 0 1 17137 4690 10894 10900 20755 20755 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 116.61 1 120.11 119.61 120.61 3.4965 0 0 0 0.53105 1 28476 28476 0 0 1 17138 4690 10894 10900 20756 20756 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 117.07 1 120.56 120.06 121.06 3.4891 0 0 0 0.53105 1 28599 28599 0 0 1 17139 4690 10894 10900 20757 20757 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29925537109375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 16.608 1 19.97 19.47 20.47 3.3619 0 0 0 0.53105 1 1064 1064 0 0 1 17140 4690 10894 10900 20758 20758 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.087 1 20.446 19.946 20.946 3.3581 0 0 0 0.53105 1 1188 1188 0 0 1 17141 4690 10894 10900 20759 20759 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.98 1 21.338 20.838 21.838 3.3581 0 0 0 0.53105 1 1412 1412 0 0 1 17142 4690 10894 10900 20760 20760 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.455 1 21.809 21.309 22.309 3.3545 0 0 0 0.53105 1 1539 1539 0 0 1 17143 4690 10894 10900 20761 20761 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.514 1 22.866 22.366 23.366 3.3514 0 0 0 0.53105 1 1838 1838 0 0 1 17144 4690 10894 10900 20762 20762 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.673 1 23.024 22.524 23.524 3.3514 0 0 0 0.53105 1 1882 1882 0 0 1 17145 4690 10894 10900 20763 20763 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.816 1 23.167 22.667 23.667 3.3514 0 0 0 0.53105 1 1925 1925 0 0 1 17146 4690 10894 10900 20764 20764 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.18 1 24.529 24.029 25.029 3.3496 0 0 0 0.53105 1 2327 2327 0 0 1 17147 4690 10894 10900 20765 20765 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2992248535156 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.736 1 25.086 24.586 25.586 3.3496 0 0 0 0.53105 1 2482 2482 0 0 1 17148 4690 10894 10900 20766 20766 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.201 1 25.55 25.05 26.05 3.3496 0 0 0 0.53105 1 2617 2617 0 0 1 17149 4690 10894 10900 20767 20767 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.425 1 25.776 25.276 26.276 3.3503 0 0 0 0.53105 1 2681 2681 0 0 1 17150 4690 10894 10900 20768 20768 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.585 1 25.936 25.436 26.436 3.3503 0 0 0 0.53105 1 2727 2727 0 0 1 17151 4690 10894 10900 20769 20769 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.767 1 26.117 25.617 26.617 3.3503 0 0 0 0.53105 1 2779 2779 0 0 1 17152 4690 10894 10900 20770 20770 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.344 1 26.694 26.194 27.194 3.3503 0 0 0 0.53105 1 2951 2951 0 0 1 17153 4690 10894 10900 20771 20771 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.89 1 28.241 27.741 28.741 3.3509 0 0 0 0.53105 1 3412 3412 0 0 1 17154 4690 10894 10900 20772 20772 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.113 1 28.464 27.964 28.964 3.3509 0 0 0 0.53105 1 3478 3478 0 0 1 17155 4690 10894 10900 20773 20773 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.384 1 29.732 29.232 30.232 3.3478 0 0 0 0.53105 1 3851 3851 0 0 1 17156 4690 10894 10900 20774 20774 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.30035400390625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.537 1 29.885 29.385 30.385 3.3478 0 0 0 0.53105 1 3896 3896 0 0 1 17157 4690 10894 10900 20775 20775 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.808 1 30.151 29.651 30.651 3.3422 0 0 0 0.53105 1 3978 3978 0 0 1 17158 4690 10894 10900 20776 20776 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.06 1 30.403 29.903 30.903 3.3422 0 0 0 0.53105 1 4054 4054 0 0 1 17159 4690 10894 10900 20777 20777 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.485 1 30.827 30.327 31.327 3.3422 0 0 0 0.53105 1 4178 4178 0 0 1 17160 4690 10894 10900 20778 20778 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.677 1 31.019 30.519 31.519 3.3422 0 0 0 0.53105 1 4236 4236 0 0 1 17161 4690 10894 10900 20779 20779 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.945 1 31.279 30.779 31.779 3.3337 0 0 0 0.53105 1 4314 4314 0 0 1 17162 4690 10894 10900 20780 20780 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.103 1 31.437 30.937 31.937 3.3337 0 0 0 0.53105 1 4361 4361 0 0 1 17163 4690 10894 10900 20781 20781 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29931640625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.26 1 31.594 31.094 32.094 3.3337 0 0 0 0.53105 1 4407 4407 0 0 1 17164 4690 10894 10900 20782 20782 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 28.985 1 32.308 31.808 32.808 3.3235 0 0 0 0.53105 1 4622 4622 0 0 1 17165 4690 10894 10900 20783 20783 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.643 1 32.966 32.466 33.466 3.3235 0 0 0 0.53105 1 4820 4820 0 0 1 17166 4690 10894 10900 20784 20784 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.902 1 33.225 32.725 33.725 3.3235 0 0 0 0.53105 1 4892 4892 0 0 1 17167 4690 10894 10900 20785 20785 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.213 1 33.524 33.024 34.024 3.3116 0 0 0 0.53105 1 4985 4985 0 0 1 17168 4690 10894 10900 20786 20786 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.337 1 33.648 33.148 34.148 3.3116 0 0 0 0.53105 1 5022 5022 0 0 1 17169 4690 10894 10900 20787 20787 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.492 1 33.803 33.303 34.303 3.3116 0 0 0 0.53105 1 5069 5069 0 0 1 17170 4690 10894 10900 20788 20788 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.819 1 34.131 33.631 34.631 3.3116 0 0 0 0.53105 1 5171 5171 0 0 1 17171 4690 10894 10900 20789 20789 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.973 1 34.284 33.784 34.784 3.3116 0 0 0 0.53105 1 5217 5217 0 0 1 17172 4690 10894 10900 20790 20790 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3000793457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.291 1 34.591 34.091 35.091 3.2991 0 0 0 0.53105 1 5313 5313 0 0 1 17173 4690 10894 10900 20791 20791 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.561 1 34.86 34.36 35.36 3.2991 0 0 0 0.53105 1 5395 5395 0 0 1 17174 4690 10894 10900 20792 20792 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 33.21 1 36.497 35.997 36.997 3.2867 0 0 0 0.53105 1 5891 5891 0 0 1 17175 4690 10894 10900 20793 20793 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 33.499 1 36.773 36.273 37.273 3.2748 0 0 0 0.53105 1 5979 5979 0 0 1 17176 4690 10894 10900 20794 20794 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.058 1 38.322 37.822 38.822 3.2639 0 0 0 0.53105 1 6447 6447 0 0 1 17177 4690 10894 10900 20795 20795 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2992858886719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.206 1 38.47 37.97 38.97 3.2639 0 0 0 0.53105 1 6493 6493 0 0 1 17178 4690 10894 10900 20796 20796 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 46.562 1 49.806 49.306 50.306 3.2439 0 0 0 0.53105 1 9972 9972 0 0 1 17179 4690 10894 10900 20797 20797 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2219543457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 50.372 1 53.598 53.098 54.098 3.2262 0 0 0 0.53105 1 11122 11122 0.15932 0 1 17180 4690 10894 10900 20798 20798 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 50.764 1 53.98 53.48 54.48 3.2163 0 0 0 0.53105 1 11243 11243 0 0 1 17181 4690 10894 10900 20799 20799 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.273681640625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 51.299 1 54.516 54.016 55.016 3.2163 0 0 0 0.53105 1 11405 11405 0 0 1 17182 4690 10894 10900 20800 20800 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 62.471 1 65.638 65.138 66.138 3.1667 0 0 0 0.53105 1 14813 14813 0 0 1 17183 4690 10894 10900 20801 20801 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.757 1 66.931 66.431 67.431 3.1741 0 0 0 0.53105 1 15202 15202 0 0 1 17184 4690 10894 10900 20802 20802 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2733459472656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.188 1 67.362 66.862 67.862 3.1741 0 0 0 0.53105 1 15334 15334 0 0 1 17185 4690 10894 10900 20803 20803 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 65.236 1 68.415 67.915 68.915 3.1795 0 0 0 0.53105 1 15655 15655 0 0 1 17186 4690 10894 10900 20804 20804 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 66.293 1 69.478 68.978 69.978 3.1853 0 0 0 0.53105 1 15979 15979 0 0 1 17187 4690 10894 10900 20805 20805 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 67.433 1 70.625 70.125 71.125 3.1914 0 0 0 0.53105 1 16327 16327 0 0 1 17188 4690 10894 10900 20806 20806 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 67.959 1 71.156 70.656 71.656 3.1977 0 0 0 0.53105 1 16484 16484 0 0 1 17189 4690 10894 10900 20807 20807 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 69.285 1 72.489 71.989 72.989 3.2044 0 0 0 0.53105 1 16884 16884 0 0 1 17190 4690 10894 10900 20808 20808 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 69.82 1 73.024 72.524 73.524 3.2044 0 0 0 0.53105 1 17046 17046 0 0 1 17191 4690 10894 10900 20809 20809 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 70.771 1 73.983 73.483 74.483 3.2113 0 0 0 0.53105 1 17331 17331 0 0 1 17192 4690 10894 10900 20810 20810 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.7747802734375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 90.452 1 93.849 93.349 94.349 3.3976 0 0 0 0.53105 1 22668 22668 0 0 1 17193 4690 10894 10900 20811 20811 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3004150390625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.68 1 114.21 113.71 114.71 3.529 0 0 0 0.53105 1 27157 27157 0 0 1 17194 4690 10894 10900 20812 20812 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.83 1 114.35 113.85 114.85 3.529 0 0 0 0.53105 1 27192 27192 0 0 1 17195 4690 10894 10900 20813 20813 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.25 1 114.77 114.27 115.27 3.5207 0 0 0 0.53105 1 27302 27302 0 0 1 17196 4690 10894 10900 20814 20814 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.88 1 115.4 114.9 115.9 3.5207 0 0 0 0.53105 1 27473 27473 0 0 1 17197 4690 10894 10900 20815 20815 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.16 1 117.65 117.15 118.15 3.4963 0 0 0 0.53105 1 28020 28020 0 0 1 17198 4690 10894 10900 20816 20816 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.336 1 21.867 21.367 22.367 3.5313 0 0 0 0.53105 1 1218 1218 0 0 1 17199 4690 10894 10900 20817 20817 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.375 1 22.913 22.413 23.413 3.5378 0 0 0 0.53105 1 1457 1457 0 0 1 17200 4690 10894 10900 20818 20818 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.476 1 25.03 24.53 25.53 3.5533 0 0 0 0.53105 1 1968 1968 0 0 1 17201 4690 10894 10900 20819 20819 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.008 1 25.562 25.062 26.062 3.5533 0 0 0 0.53105 1 2090 2090 0 0 1 17202 4690 10894 10900 20820 20820 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.172 1 25.725 25.225 26.225 3.5533 0 0 0 0.53105 1 2131 2131 0 0 1 17203 4690 10894 10900 20821 20821 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.377 1 26.937 26.437 27.437 3.5605 0 0 0 0.53105 1 2430 2430 0 0 1 17204 4690 10894 10900 20822 20822 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.628 1 29.195 28.695 29.695 3.5667 0 0 0 0.53105 1 3015 3015 0 0 1 17205 4690 10894 10900 20823 20823 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.828 1 29.395 28.895 29.895 3.5667 0 0 0 0.53105 1 3069 3069 0 0 1 17206 4690 10894 10900 20824 20824 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.2 1 29.767 29.267 30.267 3.5667 0 0 0 0.53105 1 3179 3179 0 0 1 17207 4690 10894 10900 20825 20825 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.474 1 30.04 29.54 30.54 3.5667 0 0 0 0.53105 1 3257 3257 0 0 1 17208 4690 10894 10900 20826 20826 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.34 1 32.89 32.39 33.39 3.5499 0 0 0 0.53105 1 4063 4063 0 0 1 17209 4690 10894 10900 20827 20827 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.3003845214844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.794 1 33.344 32.844 33.844 3.5499 0 0 0 0.53105 1 4193 4193 0 0 1 17210 4690 10894 10900 20828 20828 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.48 1 34.022 33.522 34.522 3.542 0 0 0 0.53105 1 4379 4379 0 0 1 17211 4690 10894 10900 20829 20829 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.608 1 34.15 33.65 34.65 3.542 0 0 0 0.53105 1 4416 4416 0 0 1 17212 4690 10894 10900 20830 20830 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.145 1 34.679 34.179 35.179 3.5342 0 0 0 0.53105 1 4569 4569 0 0 1 17213 4690 10894 10900 20831 20831 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.341 1 34.876 34.376 35.376 3.5342 0 0 0 0.53105 1 4626 4626 0 0 1 17214 4690 10894 10900 20832 20832 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.30023193359375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 36.22 1 39.73 39.23 40.23 3.5101 0 0 0 0.53105 1 6024 6024 0 0 1 17215 4690 10894 10900 20833 20833 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 36.562 1 40.069 39.569 40.569 3.507 0 0 0 0.53105 1 6117 6117 0 0 1 17216 4690 10894 10900 20834 20834 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 40.929 1 44.435 43.935 44.935 3.506 0 0 0 0.53105 1 7399 7399 0 0 1 17217 4690 10894 10900 20835 20835 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 41.001 1 44.507 44.007 45.007 3.506 0 0 0 0.53105 1 7421 7421 0 0 1 17218 4690 10894 10900 20836 20836 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 74.358 1 77.848 77.348 78.348 3.49 0 0 0 0.53105 1 17567 17567 0 0 1 17219 4690 10894 10900 20837 20837 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 78.582 1 82.117 81.617 82.617 3.5352 0 0 0 0.53105 1 18739 18739 0 0 1 17220 4690 10894 10900 20838 20838 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.30010986328125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 81.058 1 84.62 84.12 85.12 3.5624 0 0 0 0.53105 1 19323 19323 0 0 1 17221 4690 10894 10900 20839 20839 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29931640625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 86.575 1 90.188 89.688 90.688 3.613 0 0 0 0.53105 1 20743 20743 0 0 1 17222 4690 10894 10900 20840 20840 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2909851074219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 87.608 1 91.227 90.727 91.727 3.6187 0 0 0 0.53105 1 20996 20996 0 0 1 17223 4690 10894 10900 20841 20841 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.17 1 114.8 114.3 115.3 3.6326 0 0 0 0.53105 1 26971 26971 0 0 1 17224 4690 10894 10900 20842 20842 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.46 1 115.1 114.6 115.6 3.6326 0 0 0 0.53105 1 27041 27041 0 0 1 17225 4690 10894 10900 20843 20843 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.71 1 115.34 114.84 115.84 3.6326 0 0 0 0.53105 1 27102 27102 0 0 1 17226 4690 10894 10900 20844 20844 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.91 1 115.54 115.04 116.04 3.6321 0 0 0 0.53105 1 27149 27149 0 0 1 17227 4690 10894 10900 20845 20845 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.08 1 115.71 115.21 116.21 3.6321 0 0 0 0.53105 1 27193 27193 0 0 1 17228 4690 10894 10900 20846 20846 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.27 1 115.9 115.4 116.4 3.6321 0 0 0 0.53105 1 27239 27239 0 0 1 17229 4690 10894 10900 20847 20847 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2993469238281 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.56 1 116.19 115.69 116.69 3.6321 0 0 0 0.53105 1 27322 27322 0 0 1 17230 4690 10894 10900 20848 20848 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.71 1 116.34 115.84 116.84 3.6321 0 0 0 0.53105 1 27356 27356 0 0 1 17231 4690 10894 10900 20849 20849 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.30010986328125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.85 1 116.48 115.98 116.98 3.6321 0 0 0 0.53105 1 27399 27399 0 0 1 17232 4690 10894 10900 20850 20850 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.98 1 116.61 116.11 117.11 3.6314 0 0 0 0.53105 1 27434 27434 0 0 1 17233 4690 10894 10900 20851 20851 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.18 1 116.82 116.32 117.32 3.6314 0 0 0 0.53105 1 27491 27491 0 0 1 17234 4690 10894 10900 20852 20852 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.22 116.72 117.72 3.6314 0 0 0 0.53105 1 27597 27597 0 0 1 17235 4690 10894 10900 20853 20853 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.83 1 117.46 116.96 117.96 3.6314 0 0 0 0.53105 1 27661 27661 0 0 1 17236 4690 10894 10900 20854 20854 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.32 1 117.95 117.45 118.45 3.6301 0 0 0 0.53105 1 27792 27792 0 0 1 17237 4690 10894 10900 20855 20855 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.21 117.71 118.71 3.6301 0 0 0 0.53105 1 27858 27858 0 0 1 17238 4690 10894 10900 20856 20856 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.74 1 118.37 117.87 118.87 3.6301 0 0 0 0.53105 1 27895 27895 0 0 1 17239 4690 10894 10900 20857 20857 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 115.25 1 118.88 118.38 119.38 3.6282 0 0 0 0.53105 1 28033 28033 0 0 1 17240 4690 10894 10900 20858 20858 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_1 5 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 115.39 1 119.02 118.52 119.52 3.6282 0 0 0 0.53105 1 28069 28069 0 0 1 17241 4690 10894 10900 20859 20859 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 16.76 1 20.413 19.913 20.913 3.6527 0 0 0 0.53105 1 880 880 0 0 1 17242 4690 10894 10900 20860 20860 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29937744140625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.331 1 20.982 20.482 21.482 3.6518 0 0 0 0.53105 1 993 993 0 0 1 17243 4690 10894 10900 20861 20861 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.464 1 21.116 20.616 21.616 3.6518 0 0 0 0.53105 1 1023 1023 0 0 1 17244 4690 10894 10900 20862 20862 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.861 1 21.513 21.013 22.013 3.6518 0 0 0 0.53105 1 1106 1106 0 0 1 17245 4690 10894 10900 20863 20863 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.014 1 21.666 21.166 22.166 3.6518 0 0 0 0.53105 1 1139 1139 0 0 1 17246 4690 10894 10900 20864 20864 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.619 1 22.27 21.77 22.77 3.6509 0 0 0 0.53105 1 1276 1276 0 0 1 17247 4690 10894 10900 20865 20865 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.741 1 22.392 21.892 22.892 3.6509 0 0 0 0.53105 1 1306 1306 0 0 1 17248 4690 10894 10900 20866 20866 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.863 1 22.514 22.014 23.014 3.6509 0 0 0 0.53105 1 1335 1335 0 0 1 17249 4690 10894 10900 20867 20867 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.765 1 23.414 22.914 23.914 3.6497 0 0 0 0.53105 1 1570 1570 0 0 1 17250 4690 10894 10900 20868 20868 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.997 1 23.647 23.147 24.147 3.6497 0 0 0 0.53105 1 1634 1634 0 0 1 17251 4690 10894 10900 20869 20869 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.146 1 23.796 23.296 24.296 3.6497 0 0 0 0.53105 1 1676 1676 0 0 1 17252 4690 10894 10900 20870 20870 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2994079589844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.172 1 24.82 24.32 25.32 3.648 0 0 0 0.53105 1 1953 1953 0 0 1 17253 4690 10894 10900 20871 20871 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.575 1 25.221 24.721 25.721 3.6459 0 0 0 0.53105 1 2062 2062 0 0 1 17254 4690 10894 10900 20872 20872 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.885 1 25.53 25.03 26.03 3.6459 0 0 0 0.53105 1 2143 2143 0 0 1 17255 4690 10894 10900 20873 20873 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.103 1 25.748 25.248 26.248 3.6459 0 0 0 0.53105 1 2203 2203 0 0 1 17256 4690 10894 10900 20874 20874 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2994384765625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.526 1 26.169 25.669 26.669 3.6432 0 0 0 0.53105 1 2317 2317 0 0 1 17257 4690 10894 10900 20875 20875 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.847 1 26.491 25.991 26.991 3.6432 0 0 0 0.53105 1 2397 2397 0 0 1 17258 4690 10894 10900 20876 20876 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.169 1 26.812 26.312 27.312 3.6432 0 0 0 0.53105 1 2481 2481 0 0 1 17259 4690 10894 10900 20877 20877 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.553 1 27.193 26.693 27.693 3.6397 0 0 0 0.53105 1 2589 2589 0 0 1 17260 4690 10894 10900 20878 20878 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.30010986328125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.725 1 27.365 26.865 27.865 3.6397 0 0 0 0.53105 1 2636 2636 0 0 1 17261 4690 10894 10900 20879 20879 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.151 1 27.791 27.291 28.291 3.6397 0 0 0 0.53105 1 2759 2759 0 0 1 17262 4690 10894 10900 20880 20880 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.30035400390625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.389 1 28.029 27.529 28.529 3.6397 0 0 0 0.53105 1 2822 2822 0 0 1 17263 4690 10894 10900 20881 20881 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2994384765625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.561 1 28.2 27.7 28.7 3.6385 0 0 0 0.53105 1 2871 2871 0 0 1 17264 4690 10894 10900 20882 20882 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.681 1 28.317 27.817 28.817 3.6363 0 0 0 0.53105 1 2898 2898 0 0 1 17265 4690 10894 10900 20883 20883 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.124 1 28.76 28.26 29.26 3.6363 0 0 0 0.53105 1 3015 3015 0 0 1 17266 4690 10894 10900 20884 20884 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.507 1 29.143 28.643 29.643 3.6363 0 0 0 0.53105 1 3116 3116 0 0 1 17267 4690 10894 10900 20885 20885 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.3002624511719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.823 1 29.457 28.957 29.957 3.6332 0 0 0 0.53105 1 3198 3198 0 0 1 17268 4690 10894 10900 20886 20886 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.947 1 29.58 29.08 30.08 3.6332 0 0 0 0.53105 1 3234 3234 0 0 1 17269 4690 10894 10900 20887 20887 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.443 1 30.077 29.577 30.577 3.6332 0 0 0 0.53105 1 3367 3367 0 0 1 17270 4690 10894 10900 20888 20888 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.396 1 34.031 33.531 34.531 3.6351 0 0 0 0.53105 1 4443 4443 0 0 1 17271 4690 10894 10900 20889 20889 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.579 1 34.214 33.714 34.714 3.6351 0 0 0 0.53105 1 4494 4494 0 0 1 17272 4690 10894 10900 20890 20890 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.76 1 34.395 33.895 34.895 3.6351 0 0 0 0.53105 1 4547 4547 0 0 1 17273 4690 10894 10900 20891 20891 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.92 1 34.555 34.055 35.055 3.6351 0 0 0 0.53105 1 4591 4591 0 0 1 17274 4690 10894 10900 20892 20892 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.30029296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.443 1 35.084 34.584 35.584 3.641 0 0 0 0.53105 1 4731 4731 0 0 1 17275 4690 10894 10900 20893 20893 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.802 1 35.443 34.943 35.943 3.641 0 0 0 0.53105 1 4830 4830 0 0 1 17276 4690 10894 10900 20894 20894 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.21343994140625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 39.847 1 43.588 43.088 44.088 3.7413 0 0 0 0.53105 1 7114 7114 0 0 1 17277 4690 10894 10900 20895 20895 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 78.594 1 82.216 81.716 82.716 3.6222 0 0 0 0.53105 1 18643 18643 0 0 1 17278 4690 10894 10900 20896 20896 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29095458984375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 87.887 1 91.615 91.115 92.115 3.7279 0 0 0 0.53105 1 20914 20914 0 0 1 17279 4690 10894 10900 20897 20897 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.30010986328125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 95.892 1 99.672 99.172 100.17 3.7804 0 0 0 0.53105 1 22779 22779 0 0 1 17280 4690 10894 10900 20898 20898 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.30096435546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 107.69 1 111.37 110.87 111.87 3.6783 0 0 0 0.53105 1 25463 25463 0 0 1 17281 4690 10894 10900 20899 20899 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.59 1 114.26 113.76 114.76 3.669 0 0 0 0.53105 1 26308 26308 0 0 1 17282 4690 10894 10900 20900 20900 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.72 1 114.39 113.89 114.89 3.669 0 0 0 0.53105 1 26339 26339 0 0 1 17283 4690 10894 10900 20901 20901 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 110.85 1 114.52 114.02 115.02 3.669 0 0 0 0.53105 1 26370 26370 0 0 1 17284 4690 10894 10900 20902 20902 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.18 1 114.85 114.35 115.35 3.6666 0 0 0 0.53105 1 26446 26446 0 0 1 17285 4690 10894 10900 20903 20903 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.31 1 114.98 114.48 115.48 3.6666 0 0 0 0.53105 1 26478 26478 0 0 1 17286 4690 10894 10900 20904 20904 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.67 1 115.34 114.84 115.84 3.6666 0 0 0 0.53105 1 26568 26568 0 0 1 17287 4690 10894 10900 20905 20905 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.81 1 115.47 114.97 115.97 3.6666 0 0 0 0.53105 1 26607 26607 0 0 1 17288 4690 10894 10900 20906 20906 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.96 1 115.62 115.12 116.12 3.6666 0 0 0 0.53105 1 26648 26648 0 0 1 17289 4690 10894 10900 20907 20907 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2994384765625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.22 1 115.88 115.38 116.38 3.6648 0 0 0 0.53105 1 26724 26724 0 0 1 17290 4690 10894 10900 20908 20908 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.5 1 116.16 115.66 116.66 3.6648 0 0 0 0.53105 1 26805 26805 0 0 1 17291 4690 10894 10900 20909 20909 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.05 1 116.72 116.22 117.22 3.6648 0 0 0 0.53105 1 26964 26964 0 0 1 17292 4690 10894 10900 20910 20910 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.39 1 118.05 117.55 118.55 3.6616 0 0 0 0.53105 1 27342 27342 0 0 1 17293 4690 10894 10900 20911 20911 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.99 1 118.65 118.15 119.15 3.6616 0 0 0 0.53105 1 27507 27507 0 0 1 17294 4690 10894 10900 20912 20912 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 115.6 1 119.26 118.76 119.76 3.6607 0 0 0 0.53105 1 27673 27673 0 0 1 17295 4690 10894 10900 20913 20913 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2992858886719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 16.567 1 20.116 19.616 20.616 3.5486 0 0 0 0.53105 1 822 822 0 0 1 17296 4690 10894 10900 20914 20914 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.428 1 20.991 20.491 21.491 3.5637 0 0 0 0.53105 1 990 990 0 0 1 17297 4690 10894 10900 20915 20915 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.063 1 21.627 21.127 22.127 3.5637 0 0 0 0.53105 1 1131 1131 0 0 1 17298 4690 10894 10900 20916 20916 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.192 1 21.78 21.28 22.28 3.5874 0 0 0 0.53105 1 1162 1162 0 0 1 17299 4690 10894 10900 20917 20917 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.32 1 21.907 21.407 22.407 3.5874 0 0 0 0.53105 1 1191 1191 0 0 1 17300 4690 10894 10900 20918 20918 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.462 1 22.049 21.549 22.549 3.5874 0 0 0 0.53105 1 1224 1224 0 0 1 17301 4690 10894 10900 20919 20919 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.726 1 22.313 21.813 22.813 3.5874 0 0 0 0.53105 1 1286 1286 0 0 1 17302 4690 10894 10900 20920 20920 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.872 1 22.459 21.959 22.959 3.5874 0 0 0 0.53105 1 1323 1323 0 0 1 17303 4690 10894 10900 20921 20921 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.018 1 22.605 22.105 23.105 3.5874 0 0 0 0.53105 1 1361 1361 0 0 1 17304 4690 10894 10900 20922 20922 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.199 1 22.786 22.286 23.286 3.5874 0 0 0 0.53105 1 1408 1408 0 0 1 17305 4690 10894 10900 20923 20923 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.327 1 22.948 22.448 23.448 3.6215 0 0 0 0.53105 1 1438 1438 0 0 1 17306 4690 10894 10900 20924 20924 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.468 1 23.089 22.589 23.589 3.6215 0 0 0 0.53105 1 1475 1475 0 0 1 17307 4690 10894 10900 20925 20925 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.719 1 23.341 22.841 23.841 3.6215 0 0 0 0.53105 1 1543 1543 0 0 1 17308 4690 10894 10900 20926 20926 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 19.945 1 23.567 23.067 24.067 3.6215 0 0 0 0.53105 1 1605 1605 0 0 1 17309 4690 10894 10900 20927 20927 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.077 1 23.698 23.198 24.198 3.6215 0 0 0 0.53105 1 1640 1640 0 0 1 17310 4690 10894 10900 20928 20928 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.498 1 24.165 23.665 24.665 3.6667 0 0 0 0.53105 1 1755 1755 0 0 1 17311 4690 10894 10900 20929 20929 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.008 1 24.675 24.175 25.175 3.6667 0 0 0 0.53105 1 1901 1901 0 0 1 17312 4690 10894 10900 20930 20930 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.747 1 25.461 24.961 25.961 3.7144 0 0 0 0.53105 1 2100 2100 0 0 1 17313 4690 10894 10900 20931 20931 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.329 1 26.044 25.544 26.544 3.7144 0 0 0 0.53105 1 2263 2263 0 0 1 17314 4690 10894 10900 20932 20932 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.74 1 26.49 25.99 26.99 3.7507 0 0 0 0.53105 1 2369 2369 0 0 1 17315 4690 10894 10900 20933 20933 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 22.892 1 26.643 26.143 27.143 3.7507 0 0 0 0.53105 1 2413 2413 0 0 1 17316 4690 10894 10900 20934 20934 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.029 1 26.779 26.279 27.279 3.7507 0 0 0 0.53105 1 2448 2448 0 0 1 17317 4690 10894 10900 20935 20935 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.475 1 27.226 26.726 27.726 3.7507 0 0 0 0.53105 1 2575 2575 0 0 1 17318 4690 10894 10900 20936 20936 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 23.62 1 27.389 26.889 27.889 3.769 0 0 0 0.53105 1 2617 2617 0 0 1 17319 4690 10894 10900 20937 20937 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.013 1 27.782 27.282 28.282 3.769 0 0 0 0.53105 1 2720 2720 0 0 1 17320 4690 10894 10900 20938 20938 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.155 1 27.924 27.424 28.424 3.769 0 0 0 0.53105 1 2756 2756 0 0 1 17321 4690 10894 10900 20939 20939 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.544 1 28.313 27.813 28.813 3.769 0 0 0 0.53105 1 2858 2858 0 0 1 17322 4690 10894 10900 20940 20940 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.245 1 29.014 28.514 29.514 3.769 0 0 0 0.53105 1 3042 3042 0 0 1 17323 4690 10894 10900 20941 20941 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.632 1 29.401 28.901 29.901 3.769 0 0 0 0.53105 1 3146 3146 0 0 1 17324 4690 10894 10900 20942 20942 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.755 1 29.522 29.022 30.022 3.7663 0 0 0 0.53105 1 3176 3176 0 0 1 17325 4690 10894 10900 20943 20943 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.048 1 29.814 29.314 30.314 3.7663 0 0 0 0.53105 1 3250 3250 0 0 1 17326 4690 10894 10900 20944 20944 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.385 1 30.151 29.651 30.651 3.7663 0 0 0 0.53105 1 3333 3333 0 0 1 17327 4690 10894 10900 20945 20945 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.54 1 30.307 29.807 30.807 3.7663 0 0 0 0.53105 1 3373 3373 0 0 1 17328 4690 10894 10900 20946 20946 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.868 1 30.623 30.123 31.123 3.7555 0 0 0 0.53105 1 3457 3457 0 0 1 17329 4690 10894 10900 20947 20947 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 29.62 1 33.349 32.849 33.849 3.7286 0 0 0 0.53105 1 4176 4176 0 0 1 17330 4690 10894 10900 20948 20948 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 30.602 1 34.317 33.817 34.817 3.7146 0 0 0 0.53105 1 4433 4433 0 0 1 17331 4690 10894 10900 20949 20949 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.105 1 34.82 34.32 35.32 3.7146 0 0 0 0.53105 1 4561 4561 0 0 1 17332 4690 10894 10900 20950 20950 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.254 1 34.955 34.455 35.455 3.7015 0 0 0 0.53105 1 4600 4600 0 0 1 17333 4690 10894 10900 20951 20951 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.3001708984375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.778 1 39.444 38.944 39.944 3.6667 0 0 0 0.53105 1 5846 5846 0 0 1 17334 4690 10894 10900 20952 20952 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 40.644 1 44.295 43.795 44.795 3.6509 0 0 0 0.53105 1 7253 7253 0 0 1 17335 4690 10894 10900 20953 20953 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 69.101 1 72.61 72.11 73.11 3.5094 0 0 0 0.53105 1 15893 15893 0 0 1 17336 4690 10894 10900 20954 20954 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.27362060546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 70.136 1 73.649 73.149 74.149 3.5128 0 0 0 0.53105 1 16208 16208 0 0 1 17337 4690 10894 10900 20955 20955 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 81.64 1 85.325 84.825 85.825 3.685 0 0 0 0.53105 1 19331 19331 0 0 1 17338 4690 10894 10900 20956 20956 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.3004150390625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 108.79 1 112.46 111.96 112.96 3.6751 0 0 0 0.53105 1 25789 25789 0 0 1 17339 4690 10894 10900 20957 20957 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.32 1 114.99 114.49 115.49 3.6654 0 0 0 0.53105 1 26415 26415 0 0 1 17340 4690 10894 10900 20958 20958 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.5 1 115.16 114.66 115.66 3.6654 0 0 0 0.53105 1 26465 26465 0 0 1 17341 4690 10894 10900 20959 20959 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.81 1 115.47 114.97 115.97 3.6614 0 0 0 0.53105 1 26547 26547 0 0 1 17342 4690 10894 10900 20960 20960 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.25 1 115.91 115.41 116.41 3.6614 0 0 0 0.53105 1 26665 26665 0 0 1 17343 4690 10894 10900 20961 20961 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.96 1 116.62 116.12 117.12 3.6568 0 0 0 0.53105 1 26849 26849 0 0 1 17344 4690 10894 10900 20962 20962 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.25 1 116.91 116.41 117.41 3.6568 0 0 0 0.53105 1 26923 26923 0 0 1 17345 4690 10894 10900 20963 20963 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.38 1 117.04 116.54 117.54 3.6568 0 0 0 0.53105 1 26956 26956 0 0 1 17346 4690 10894 10900 20964 20964 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.04 1 117.69 117.19 118.19 3.6511 0 0 0 0.53105 1 27137 27137 0 0 1 17347 4690 10894 10900 20965 20965 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.83 1 118.48 117.98 118.98 3.6511 0 0 0 0.53105 1 27314 27314 0 0 1 17348 4690 10894 10900 20966 20966 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.95 1 118.6 118.1 119.1 3.6433 0 0 0 0.53105 1 27345 27345 0 0 1 17349 4690 10894 10900 20967 20967 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 116.46 1 120.09 119.59 120.59 3.6312 0 0 0 0.53105 1 27715 27715 0 0 1 17350 4690 10894 10900 20968 20968 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 118.75 1 122.34 121.84 122.84 3.5847 0 0 0 0.53105 1 28236 28236 0 0 1 17351 4690 10894 10900 20969 20969 0.27787366549569015 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 119.05 1 122.63 122.13 123.13 3.5847 0 0 0 0.53105 1 28298 28298 0 0 1 17352 4690 10894 10900 20970 20970 0.27787366549569015 KKKKKKKGRKV 11 Unmodified _KKKKKKKGRKV_ 0 0 0 L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2694396972656 3 452.661029 1354.96126 NaN NaN NaN NaN NaN NaN NaN 55.708 1 55.708 55.208 56.208 0 0 0 0 0.38417 1 12116 12116 0 0 1 17353 9060 10895 10901 20971 20971 0.2979753173519839 KKKKKKKKAYK 11 Unmodified _KKKKKKKKAYK_ 0 0 0 L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.33135986328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 68.615 1 68.615 68.115 69.115 0 0 0 0 0.38417 1 15676 15676 0 0 1 17354 9083 10896 10902 20972 20972 0.2793899615812734 KKKKKKKKAYK 11 Unmodified _KKKKKKKKAYK_ 0 0 0 L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 73.823 1 73.823 73.323 74.323 0 0 0 0 0.38417 1 17122 17122 0 0 1 17355 9083 10896 10902 20973 20973 0.2793899615812734 KKKKKKKKAYK 11 Unmodified _KKKKKKKKAYK_ 0 0 0 L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3383483886719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 91.977 1 91.977 91.477 92.477 0 0 0 0 0.38417 1 22240 22240 0 0 1 17356 9083 10896 10902 20974 20974 0.2793899615812734 KKKKKKKKK 9 Unmodified _KKKKKKKKK_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|125|2|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;ENSG00000058063.16,ATP11B,chr3,+,I31.1,182905920,182908458|29|10.55|1|intron;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|108|3|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|12|3|sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|7|2|sense;L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|62|3|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|4|1|sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|3|1|sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|10|2|sense;Tigger1_dup3851|chr5:14494916-14495686:+|1.3820741180520584|0.2801861438051811|2.3|151.0|28|3|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|57|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|7|2|sense;AluSc8_dup18585|chr17:29741925-29742231:-|2.269287239570923|0.1437505543860524|3.98|151.0|5|2|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|10|3|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|130|3|sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|38|3|sense;L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|8|2|sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|15|2|sense;ENST00000549136.1_1_12:95869884-95877058:+|nuORF;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|11|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|75|2|sense;L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|13|1|sense;AluJr_dup79608|chr19:45859760-45860148:+|1.849819798513756|0.3617442697558052|2.35|151.0|12|3|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|2|1|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|21|1|sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|130|3|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|4|1|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|11|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|2|1|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|15|3|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|5|1|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|4|1|sense;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|114|3|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|7|2|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|11|3|sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|77|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|10|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|6|2|sense;L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|3|1|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|12|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|144|3|sense;AluJb_dup15266|chr2:74096810-74097121:+|1.0188423160046711|0.0464254213681194|4.46|151.0|3|1|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|4|1|sense;L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|10|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|7|2|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|10|3|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|7|2|sense;AluSx1_dup44541|chr7:92646386-92646697:-|2.511429131804846|0.0230098990658918|6.77|151.0|8|2|sense;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;AluY_dup17374|chr3:15776994-15777301:+|2.6851697133845747|0.0122014572588756|7.78|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|1|1|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|143|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|29|2|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|45|1|anti-sense;ENSG00000087470.18,DNM1L,chr12,+,I10.1,32711273,32713208|53|13.91|1|intron;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|3|1|sense;L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|53|3|sense;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;ENSG00000235750|ENST00000423313|KIAA0040;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|71|3|anti-sense;ENSG00000164609|ENST00000297151|SLU7;ENSG00000147649|ENST00000336273|MTDH;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;ENSG00000181585|ENST00000643606|TMIE;ENSG00000126070.20,AGO3,chr1,+,I21.1,36043549,36054945|27|8.12|3|intron;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|47|1|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|80|2|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|91|3|sense;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|7|2|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|5|2|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|2|1|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|8|2|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|23|1|anti-sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|7|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|4|1|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|10|3|sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|42|2|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|3|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|4|1|sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|90|2|sense;AluSx1_dup112694|chr21:5103328-5103510:+|1.5973470578528437|0.161594178134223|3.31|151.0|7|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|3|1|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|2|1|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|3|1|sense;AluSx1_dup90936|chr16:23873047-23873400:+|1.356324635675553|0.0215145511172893|5.98|151.0|11|3|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|43|1|sense;ENST00000357731.9_1_1:72748195-72748351:-|nuORF;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|3|1|sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|22|2|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|8|2|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|5|1|sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|139|2|sense;AluSx1_dup37572|chr6:85635488-85635802:+|1.4954711006093628|0.0109237314065769|7.1|151.0|12|3|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|6|1|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|5|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|8|2|sense;AluSc8_dup17551|chr16:21444092-21444398:-|1.2392776490037605|0.1490810565795009|3.06|150.0|13|3|sense;L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|45|3|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|7|3|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|10|1|sense;AluJb_dup104807|chr16:89407551-89407882:+|1.1644613920390687|0.0215228538272297|5.76|151.0|4|1|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|4|1|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|127|3|sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|6|2|sense;AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|10|2|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|53|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|15|3|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|14|3|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|11|1|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|10|2|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|4|1|sense;L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|12|2|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|12|3|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|7|2|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|10|2|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|7|2|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|16|3|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|9|2|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|33|2|sense;AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|12|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|10|2|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|13|3|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|12|3|sense;L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|132|3|sense;AluJr_dup13759|chr3:33548760-33549054:-|1.2844856692523572|0.2441155484820085|2.4|151.0|10|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|3|1|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|5|1|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|7|2|sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|3|1|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|14|3|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|5|1|sense;AluJb_dup101209|chr16:21868299-21868609:+|1.8797539312591889|0.200150386994308|3.23|151.0|14|3|sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|4|1|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|13|3|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|3|1|sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|11|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|4|1|sense;AluSg7_dup2690|chr5:169891704-169892025:+|1.3323361173282242|0.0424876230457909|4.97|151.0|8|2|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|4|1|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|9|2|sense;AluSx1_dup80101|chr13:50100294-50100593:+|1.5466399999492386|0.0149047366921249|6.7|151.0|3|1|sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|12|3|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|10|3|sense;AluJb_dup88520|chr13:28047428-28047740:+|1.4645159655989155|0.0031173096032828|8.88|151.0|11|3|sense;AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|3|1|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|8|3|sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|10|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|14|3|sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|2|1|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|12|3|sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|88|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|8|2|sense;AluSx_dup7322|chr1:173995252-173995562:+|1.164299673152568|0.006359618828167|7.52|151.0|9|2|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|14|3|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|3|1|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|15|1|sense;AluSx1_dup43965|chr7:75378486-75378800:+|1.0224601099708013|0.0739587964535085|3.79|145.0|4|1|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|13|3|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|8|2|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|14|3|sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|32|3|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|8|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|3|1|sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|8|2|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|10|2|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|152|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|4|1|sense;AluSq2_dup55467|chr19:15316362-15316619:+|1.0051527069669488|0.0234474362759726|5.42|151.0|4|1|sense;L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|4|1|sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|3|1|sense;AluSc_dup23506|chr12:27006129-27006436:-|1.0487556229545705|0.0307910336332092|5.09|151.0|4|1|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|3|1|sense;ENST00000263464.7_1_11:102193472-102193544:+|nuORF;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|4|1|sense;L1MDa_dup2172|chr5:178507535-178508978:-|1.3830038419623665|0.0270122292401413|5.68|146.0|29|2|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|3|1|sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|23|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|14|3|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|9|2|sense;AluJb_dup125412|chr22:40535342-40535652:-|1.0963791590991123|0.0700071834268548|3.97|151.0|15|3|sense;AluY_dup66532|chr11:66619558-66619865:-|2.019233300739974|0.4917919692698633|2.04|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|4|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|9|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|4|1|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|8|2|sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|3|1|sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|11|3|sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|13|3|sense;MER65-int_dup267|chr4:139160991-139161688:+|3.4070951132217724|0.0661692845245318|5.69|151.0|26|3|sense;AluSx1_dup104078|chr19:7433738-7434047:+|1.6683328942837268|0.0228876494684527|6.19|151.0|8|2|sense;AluSp_dup33931|chr12:104461882-104462196:+|2.5466834275478867|0.0440867020005679|5.85|151.0|13|3|sense;ENSG00000183354|ENST00000399933|KIAA2026;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|132|3|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|12|3|sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|11|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|12|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|12|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|9|2|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|10|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|96|2|sense;AluSx1_dup113502|chr21:34854410-34854613:+|1.316746649678359|0.0210558908533853|5.97|151.0|2|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|8|2|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|85|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|12|3|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|7|2|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|2|1|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|7|2|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|3|1|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|6|1|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|60|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|17|1|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|28|2|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|20|2|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|5|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|10|3|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|13|3|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|10|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|9|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|11|3|sense;AluJb_dup144|chr1:1883020-1883308:+|1.2509263987826071|0.0177470246572713|6.14|151.0|4|1|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|4|1|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|8|2|sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|7|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|6|2|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|10|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|10|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|4|1|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|5|1|sense;AluSx1_dup57540|chrX:1476908-1477218:+|1.5401912601292471|0.0055350266363355|8.12|151.0|9|2|sense;AluY_dup33776|chr5:177071406-177071713:+|1.02189231345965|0.2899967782079396|1.82|151.0|14|3|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|5|1|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|14|3|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|9|2|sense;AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|7|2|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|11|2|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|12|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|122|3|sense;ENSG00000129292|ENST00000395386|PHF20L1;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|29|1|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|7|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;ENSG00000025293|ENST00000374012|PHF20;ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;AluSq2_dup39075|chr11:117091190-117091504:-|1.470955180927242|0.0275977348529068|5.74|151.0|12|3|sense;AluSc_dup11622|chr6:15261303-15261619:-|1.3857046107551485|0.0084049862416929|7.37|151.0|4|1|sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|8|2|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|9|2|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|4|1|sense;AluSz_dup71985|chr13:46134841-46135136:+|1.001121318446743|0.069485534442065|3.85|151.0|14|3|sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|6|1|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|4|1|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|11|3|sense;AluJb_dup97408|chr15:64536595-64536939:+|1.1525906254041485|0.020058349977158|5.84|151.0|8|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|4|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|9|2|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|14|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|9|2|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|4|1|sense;AluY_dup54770|chrX:1498125-1498435:+|1.1865320543414275|0.0084966476498408|7.13|151.0|3|1|sense;AluSz_dup2843|chr1:44488709-44489029:-|2.021063283771314|0.001508016629532|10.39|149.0|3|1|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|4|1|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|3|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|8|2|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|7|2|sense;AluJo_dup16959|chr4:37673177-37673491:-|1.3339420807382287|0.0420036789527594|4.99|151.0|4|1|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|8|2|sense;AluY_dup20748|chr3:128744863-128745172:-|1.3995828524395022|0.0193729715410296|6.17|151.0|5|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|4|1|sense;AluSc8_dup17695|chr16:30264559-30264866:-|1.8841084479571768|0.0350316887477073|5.75|141.0|3|1|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|7|2|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|13|3|sense;AluSp_dup32895|chr12:48934732-48935048:+|1.320267927406906|0.2698896703621427|2.29|151.0|3|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|3|1|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|5|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|10|3|sense;AluSz_dup50139|chr9:121151379-121151690:-|1.1916663530598048|0.1011518170215417|3.56|151.0|6|2|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|8|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|2|1|sense;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense ENSG00000127616|ENST00000344626|SMARCA4;REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense;REV__AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;REV__L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense;REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;ENSG00000025293|ENST00000374012|PHF20;ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense;REV__ENSG00000025293|ENST00000374012|PHF20;REV__ENSG00000111142|ENST00000323666|METAP2;REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__ENSG00000183354|ENST00000399933|KIAA2026;REV__ENSG00000235750|ENST00000423313|KIAA0040;REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF;REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|17|1|sense;REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense ENSG00000127616|ENST00000344626|SMARCA4 MSMS UPN46_class_I_Rep_3 1 586.4374389648438 2 586.439892 1170.86523 NaN NaN NaN NaN NaN NaN NaN 55.819 1 55.819 55.319 56.319 0 0 0 0 0.4029 1 12148 12148 0 0 1 17357 2570;18882;30419;823;23294;29907;392;51;3111;20784;151;286;303;18447;21309;24322;28990;21881;17618;397;13492;31654;345;131;75;247;179;30183;6255;27187;16352;33148 10897 10903 20975 20975 0.28663383895104744 KKKKKKKKK 9 Unmodified _KKKKKKKKK_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|125|2|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;ENSG00000058063.16,ATP11B,chr3,+,I31.1,182905920,182908458|29|10.55|1|intron;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|108|3|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|12|3|sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|7|2|sense;L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|62|3|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|4|1|sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|3|1|sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|10|2|sense;Tigger1_dup3851|chr5:14494916-14495686:+|1.3820741180520584|0.2801861438051811|2.3|151.0|28|3|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|57|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|7|2|sense;AluSc8_dup18585|chr17:29741925-29742231:-|2.269287239570923|0.1437505543860524|3.98|151.0|5|2|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|10|3|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|130|3|sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|38|3|sense;L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|8|2|sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|15|2|sense;ENST00000549136.1_1_12:95869884-95877058:+|nuORF;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|11|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|75|2|sense;L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|13|1|sense;AluJr_dup79608|chr19:45859760-45860148:+|1.849819798513756|0.3617442697558052|2.35|151.0|12|3|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|2|1|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|21|1|sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|130|3|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|4|1|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|11|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|2|1|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|15|3|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|5|1|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|4|1|sense;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|114|3|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|7|2|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|11|3|sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|77|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|10|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|6|2|sense;L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|3|1|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|12|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|144|3|sense;AluJb_dup15266|chr2:74096810-74097121:+|1.0188423160046711|0.0464254213681194|4.46|151.0|3|1|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|4|1|sense;L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|10|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|7|2|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|10|3|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|7|2|sense;AluSx1_dup44541|chr7:92646386-92646697:-|2.511429131804846|0.0230098990658918|6.77|151.0|8|2|sense;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;AluY_dup17374|chr3:15776994-15777301:+|2.6851697133845747|0.0122014572588756|7.78|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|1|1|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|143|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|29|2|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|45|1|anti-sense;ENSG00000087470.18,DNM1L,chr12,+,I10.1,32711273,32713208|53|13.91|1|intron;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|3|1|sense;L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|53|3|sense;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;ENSG00000235750|ENST00000423313|KIAA0040;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|71|3|anti-sense;ENSG00000164609|ENST00000297151|SLU7;ENSG00000147649|ENST00000336273|MTDH;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;ENSG00000181585|ENST00000643606|TMIE;ENSG00000126070.20,AGO3,chr1,+,I21.1,36043549,36054945|27|8.12|3|intron;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|47|1|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|80|2|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|91|3|sense;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|7|2|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|5|2|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|2|1|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|8|2|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|23|1|anti-sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|7|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|4|1|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|10|3|sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|42|2|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|3|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|4|1|sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|90|2|sense;AluSx1_dup112694|chr21:5103328-5103510:+|1.5973470578528437|0.161594178134223|3.31|151.0|7|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|3|1|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|2|1|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|3|1|sense;AluSx1_dup90936|chr16:23873047-23873400:+|1.356324635675553|0.0215145511172893|5.98|151.0|11|3|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|43|1|sense;ENST00000357731.9_1_1:72748195-72748351:-|nuORF;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|3|1|sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|22|2|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|8|2|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|5|1|sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|139|2|sense;AluSx1_dup37572|chr6:85635488-85635802:+|1.4954711006093628|0.0109237314065769|7.1|151.0|12|3|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|6|1|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|5|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|8|2|sense;AluSc8_dup17551|chr16:21444092-21444398:-|1.2392776490037605|0.1490810565795009|3.06|150.0|13|3|sense;L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|45|3|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|7|3|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|10|1|sense;AluJb_dup104807|chr16:89407551-89407882:+|1.1644613920390687|0.0215228538272297|5.76|151.0|4|1|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|4|1|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|127|3|sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|6|2|sense;AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|10|2|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|53|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|15|3|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|14|3|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|11|1|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|10|2|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|4|1|sense;L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|12|2|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|12|3|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|7|2|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|10|2|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|7|2|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|16|3|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|9|2|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|33|2|sense;AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|12|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|10|2|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|13|3|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|12|3|sense;L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|132|3|sense;AluJr_dup13759|chr3:33548760-33549054:-|1.2844856692523572|0.2441155484820085|2.4|151.0|10|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|3|1|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|5|1|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|7|2|sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|3|1|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|14|3|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|5|1|sense;AluJb_dup101209|chr16:21868299-21868609:+|1.8797539312591889|0.200150386994308|3.23|151.0|14|3|sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|4|1|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|13|3|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|3|1|sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|11|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|4|1|sense;AluSg7_dup2690|chr5:169891704-169892025:+|1.3323361173282242|0.0424876230457909|4.97|151.0|8|2|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|4|1|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|9|2|sense;AluSx1_dup80101|chr13:50100294-50100593:+|1.5466399999492386|0.0149047366921249|6.7|151.0|3|1|sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|12|3|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|10|3|sense;AluJb_dup88520|chr13:28047428-28047740:+|1.4645159655989155|0.0031173096032828|8.88|151.0|11|3|sense;AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|3|1|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|8|3|sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|10|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|14|3|sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|2|1|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|12|3|sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|88|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|8|2|sense;AluSx_dup7322|chr1:173995252-173995562:+|1.164299673152568|0.006359618828167|7.52|151.0|9|2|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|14|3|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|3|1|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|15|1|sense;AluSx1_dup43965|chr7:75378486-75378800:+|1.0224601099708013|0.0739587964535085|3.79|145.0|4|1|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|13|3|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|8|2|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|14|3|sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|32|3|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|8|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|3|1|sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|8|2|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|10|2|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|152|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|4|1|sense;AluSq2_dup55467|chr19:15316362-15316619:+|1.0051527069669488|0.0234474362759726|5.42|151.0|4|1|sense;L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|4|1|sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|3|1|sense;AluSc_dup23506|chr12:27006129-27006436:-|1.0487556229545705|0.0307910336332092|5.09|151.0|4|1|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|3|1|sense;ENST00000263464.7_1_11:102193472-102193544:+|nuORF;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|4|1|sense;L1MDa_dup2172|chr5:178507535-178508978:-|1.3830038419623665|0.0270122292401413|5.68|146.0|29|2|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|3|1|sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|23|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|14|3|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|9|2|sense;AluJb_dup125412|chr22:40535342-40535652:-|1.0963791590991123|0.0700071834268548|3.97|151.0|15|3|sense;AluY_dup66532|chr11:66619558-66619865:-|2.019233300739974|0.4917919692698633|2.04|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|4|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|9|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|4|1|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|8|2|sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|3|1|sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|11|3|sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|13|3|sense;MER65-int_dup267|chr4:139160991-139161688:+|3.4070951132217724|0.0661692845245318|5.69|151.0|26|3|sense;AluSx1_dup104078|chr19:7433738-7434047:+|1.6683328942837268|0.0228876494684527|6.19|151.0|8|2|sense;AluSp_dup33931|chr12:104461882-104462196:+|2.5466834275478867|0.0440867020005679|5.85|151.0|13|3|sense;ENSG00000183354|ENST00000399933|KIAA2026;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|132|3|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|12|3|sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|11|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|12|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|12|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|9|2|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|10|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|96|2|sense;AluSx1_dup113502|chr21:34854410-34854613:+|1.316746649678359|0.0210558908533853|5.97|151.0|2|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|8|2|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|85|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|12|3|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|7|2|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|2|1|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|7|2|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|3|1|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|6|1|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|60|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|17|1|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|28|2|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|20|2|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|5|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|10|3|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|13|3|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|10|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|9|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|11|3|sense;AluJb_dup144|chr1:1883020-1883308:+|1.2509263987826071|0.0177470246572713|6.14|151.0|4|1|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|4|1|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|8|2|sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|7|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|6|2|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|10|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|10|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|4|1|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|5|1|sense;AluSx1_dup57540|chrX:1476908-1477218:+|1.5401912601292471|0.0055350266363355|8.12|151.0|9|2|sense;AluY_dup33776|chr5:177071406-177071713:+|1.02189231345965|0.2899967782079396|1.82|151.0|14|3|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|5|1|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|14|3|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|9|2|sense;AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|7|2|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|11|2|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|12|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|122|3|sense;ENSG00000129292|ENST00000395386|PHF20L1;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|29|1|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|7|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;ENSG00000025293|ENST00000374012|PHF20;ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;AluSq2_dup39075|chr11:117091190-117091504:-|1.470955180927242|0.0275977348529068|5.74|151.0|12|3|sense;AluSc_dup11622|chr6:15261303-15261619:-|1.3857046107551485|0.0084049862416929|7.37|151.0|4|1|sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|8|2|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|9|2|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|4|1|sense;AluSz_dup71985|chr13:46134841-46135136:+|1.001121318446743|0.069485534442065|3.85|151.0|14|3|sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|6|1|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|4|1|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|11|3|sense;AluJb_dup97408|chr15:64536595-64536939:+|1.1525906254041485|0.020058349977158|5.84|151.0|8|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|4|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|9|2|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|14|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|9|2|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|4|1|sense;AluY_dup54770|chrX:1498125-1498435:+|1.1865320543414275|0.0084966476498408|7.13|151.0|3|1|sense;AluSz_dup2843|chr1:44488709-44489029:-|2.021063283771314|0.001508016629532|10.39|149.0|3|1|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|4|1|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|3|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|8|2|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|7|2|sense;AluJo_dup16959|chr4:37673177-37673491:-|1.3339420807382287|0.0420036789527594|4.99|151.0|4|1|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|8|2|sense;AluY_dup20748|chr3:128744863-128745172:-|1.3995828524395022|0.0193729715410296|6.17|151.0|5|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|4|1|sense;AluSc8_dup17695|chr16:30264559-30264866:-|1.8841084479571768|0.0350316887477073|5.75|141.0|3|1|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|7|2|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|13|3|sense;AluSp_dup32895|chr12:48934732-48935048:+|1.320267927406906|0.2698896703621427|2.29|151.0|3|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|3|1|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|5|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|10|3|sense;AluSz_dup50139|chr9:121151379-121151690:-|1.1916663530598048|0.1011518170215417|3.56|151.0|6|2|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|8|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|2|1|sense;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense ENSG00000127616|ENST00000344626|SMARCA4;REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense;REV__AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;REV__L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense;REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;ENSG00000025293|ENST00000374012|PHF20;ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense;REV__ENSG00000025293|ENST00000374012|PHF20;REV__ENSG00000111142|ENST00000323666|METAP2;REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__ENSG00000183354|ENST00000399933|KIAA2026;REV__ENSG00000235750|ENST00000423313|KIAA0040;REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF;REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|17|1|sense;REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense ENSG00000127616|ENST00000344626|SMARCA4 MSMS UPN46_class_I_Rep_3 1 586.6575927734375 2 586.439892 1170.86523 NaN NaN NaN NaN NaN NaN NaN 56.298 1 56.298 55.798 56.798 0 0 0 0 0.4029 1 12273 12273 0 0 1 17358 2570;18882;30419;823;23294;29907;392;51;3111;20784;151;286;303;18447;21309;24322;28990;21881;17618;397;13492;31654;345;131;75;247;179;30183;6255;27187;16352;33148 10897 10903 20976 20976 0.28663383895104744 KKKKKKKKK 9 Unmodified _KKKKKKKKK_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|125|2|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;ENSG00000058063.16,ATP11B,chr3,+,I31.1,182905920,182908458|29|10.55|1|intron;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|108|3|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|12|3|sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|7|2|sense;L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|62|3|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|4|1|sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|3|1|sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|10|2|sense;Tigger1_dup3851|chr5:14494916-14495686:+|1.3820741180520584|0.2801861438051811|2.3|151.0|28|3|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|57|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|7|2|sense;AluSc8_dup18585|chr17:29741925-29742231:-|2.269287239570923|0.1437505543860524|3.98|151.0|5|2|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|10|3|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|130|3|sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|38|3|sense;L1M5_dup47610|chr17:5341993-5342355:+|1.4747760557226397|0.171573664441589|3.1|151.0|8|2|sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|15|2|sense;ENST00000549136.1_1_12:95869884-95877058:+|nuORF;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|11|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|75|2|sense;L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|13|1|sense;AluJr_dup79608|chr19:45859760-45860148:+|1.849819798513756|0.3617442697558052|2.35|151.0|12|3|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|2|1|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|21|1|sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|130|3|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|4|1|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|11|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|2|1|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|15|3|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|5|1|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|4|1|sense;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|114|3|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|7|2|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|11|3|sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|77|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|10|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|6|2|sense;L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|3|1|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|12|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|144|3|sense;AluJb_dup15266|chr2:74096810-74097121:+|1.0188423160046711|0.0464254213681194|4.46|151.0|3|1|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|4|1|sense;L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|10|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|7|2|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|10|3|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|7|2|sense;AluSx1_dup44541|chr7:92646386-92646697:-|2.511429131804846|0.0230098990658918|6.77|151.0|8|2|sense;ENST00000349223.9_1_16:68260779-68260980:+|nuORF;AluY_dup17374|chr3:15776994-15777301:+|2.6851697133845747|0.0122014572588756|7.78|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|1|1|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|143|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|29|2|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|45|1|anti-sense;ENSG00000087470.18,DNM1L,chr12,+,I10.1,32711273,32713208|53|13.91|1|intron;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|3|1|sense;L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|53|3|sense;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;ENSG00000235750|ENST00000423313|KIAA0040;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|71|3|anti-sense;ENSG00000164609|ENST00000297151|SLU7;ENSG00000147649|ENST00000336273|MTDH;nc|ENSG00000089335|Q9NR11|ZNF302;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;ENSG00000181585|ENST00000643606|TMIE;ENSG00000126070.20,AGO3,chr1,+,I21.1,36043549,36054945|27|8.12|3|intron;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|47|1|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|80|2|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|91|3|sense;ENST00000373344.9_1_X:76762287-76762440:-|nuORF;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|7|2|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|5|2|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|2|1|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|8|2|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|23|1|anti-sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|7|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|4|1|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|10|3|sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|42|2|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|3|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|4|1|sense;L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|90|2|sense;AluSx1_dup112694|chr21:5103328-5103510:+|1.5973470578528437|0.161594178134223|3.31|151.0|7|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|3|1|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|2|1|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|3|1|sense;AluSx1_dup90936|chr16:23873047-23873400:+|1.356324635675553|0.0215145511172893|5.98|151.0|11|3|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|43|1|sense;ENST00000357731.9_1_1:72748195-72748351:-|nuORF;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|3|1|sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|22|2|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|8|2|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|5|1|sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|139|2|sense;AluSx1_dup37572|chr6:85635488-85635802:+|1.4954711006093628|0.0109237314065769|7.1|151.0|12|3|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|6|1|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|5|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|8|2|sense;AluSc8_dup17551|chr16:21444092-21444398:-|1.2392776490037605|0.1490810565795009|3.06|150.0|13|3|sense;L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|45|3|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|7|3|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|10|1|sense;AluJb_dup104807|chr16:89407551-89407882:+|1.1644613920390687|0.0215228538272297|5.76|151.0|4|1|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|4|1|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|127|3|sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|6|2|sense;AluJr_dup1529|chr1:32059285-32059569:+|1.1821601965404207|0.2988813499180329|1.98|151.0|10|2|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|53|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|15|3|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|14|3|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|11|1|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|10|2|sense;AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|4|1|sense;L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|12|2|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|12|3|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|7|2|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|10|2|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|7|2|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|16|3|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|9|2|sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|33|2|sense;AluJo_dup175|chr1:6053800-6054072:+|1.0345274201155357|0.0090660091943936|6.83|151.0|12|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|10|2|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|13|3|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|12|3|sense;L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|132|3|sense;AluJr_dup13759|chr3:33548760-33549054:-|1.2844856692523572|0.2441155484820085|2.4|151.0|10|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|3|1|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|5|1|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|7|2|sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|3|1|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|14|3|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|5|1|sense;AluJb_dup101209|chr16:21868299-21868609:+|1.8797539312591889|0.200150386994308|3.23|151.0|14|3|sense;AluJo_dup50547|chr12:57102944-57103162:-|1.139717143732916|0.2944104027505581|1.95|151.0|4|1|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|13|3|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|3|1|sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|11|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|4|1|sense;AluSg7_dup2690|chr5:169891704-169892025:+|1.3323361173282242|0.0424876230457909|4.97|151.0|8|2|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|4|1|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|9|2|sense;AluSx1_dup80101|chr13:50100294-50100593:+|1.5466399999492386|0.0149047366921249|6.7|151.0|3|1|sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|12|3|sense;AluSq2_dup59395|chr21:34823431-34823742:-|5.135382058160177|0.3938300593684226|3.7|151.0|10|3|sense;AluJb_dup88520|chr13:28047428-28047740:+|1.4645159655989155|0.0031173096032828|8.88|151.0|11|3|sense;AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|3|1|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|8|3|sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|10|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|14|3|sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|2|1|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|12|3|sense;L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|88|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|8|2|sense;AluSx_dup7322|chr1:173995252-173995562:+|1.164299673152568|0.006359618828167|7.52|151.0|9|2|sense;AluJb_dup101282|chr16:22502563-22502879:-|1.645576425697547|0.3541479072523706|2.22|150.0|14|3|sense;AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|3|1|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|15|1|sense;AluSx1_dup43965|chr7:75378486-75378800:+|1.0224601099708013|0.0739587964535085|3.79|145.0|4|1|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|13|3|sense;AluJo_dup23782|chr6:25022533-25022829:-|1.7337404478461238|0.0341312741853739|5.67|151.0|8|2|sense;AluJb_dup101164|chr16:21436025-21436338:+|3.821313898618672|0.2903430673565817|3.72|151.0|14|3|sense;L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|32|3|sense;AluJb_dup27420|chr3:172189566-172189830:+|1.0120376935912847|0.0169834075705585|5.9|151.0|8|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|3|1|sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|8|2|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|10|2|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|152|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|4|1|sense;AluSq2_dup55467|chr19:15316362-15316619:+|1.0051527069669488|0.0234474362759726|5.42|151.0|4|1|sense;L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|4|1|sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|3|1|sense;AluSc_dup23506|chr12:27006129-27006436:-|1.0487556229545705|0.0307910336332092|5.09|151.0|4|1|sense;AluJo_dup10988|chr2:181508861-181509189:+|2.9395456877870987|0.031251667368168|6.56|151.0|3|1|sense;ENST00000263464.7_1_11:102193472-102193544:+|nuORF;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|4|1|sense;L1MDa_dup2172|chr5:178507535-178508978:-|1.3830038419623665|0.0270122292401413|5.68|146.0|29|2|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|3|1|sense;L1MB5_dup3697|chr8:127914056-127914815:+|1.45881591421858|0.1040237502930542|3.81|151.0|23|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|14|3|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|9|2|sense;AluJb_dup125412|chr22:40535342-40535652:-|1.0963791590991123|0.0700071834268548|3.97|151.0|15|3|sense;AluY_dup66532|chr11:66619558-66619865:-|2.019233300739974|0.4917919692698633|2.04|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|4|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|9|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|4|1|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|8|2|sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|3|1|sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|11|3|sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|13|3|sense;MER65-int_dup267|chr4:139160991-139161688:+|3.4070951132217724|0.0661692845245318|5.69|151.0|26|3|sense;AluSx1_dup104078|chr19:7433738-7434047:+|1.6683328942837268|0.0228876494684527|6.19|151.0|8|2|sense;AluSp_dup33931|chr12:104461882-104462196:+|2.5466834275478867|0.0440867020005679|5.85|151.0|13|3|sense;ENSG00000183354|ENST00000399933|KIAA2026;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|132|3|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|12|3|sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|11|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|12|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|12|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|9|2|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|10|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|96|2|sense;AluSx1_dup113502|chr21:34854410-34854613:+|1.316746649678359|0.0210558908533853|5.97|151.0|2|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|8|2|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|85|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|12|3|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|7|2|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|2|1|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|7|2|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|3|1|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|6|1|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|60|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|17|1|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|28|2|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|20|2|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|5|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|10|3|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|13|3|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|10|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|9|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|11|3|sense;AluJb_dup144|chr1:1883020-1883308:+|1.2509263987826071|0.0177470246572713|6.14|151.0|4|1|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|4|1|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|8|2|sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|7|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|6|2|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|10|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|10|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|4|1|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|5|1|sense;AluSx1_dup57540|chrX:1476908-1477218:+|1.5401912601292471|0.0055350266363355|8.12|151.0|9|2|sense;AluY_dup33776|chr5:177071406-177071713:+|1.02189231345965|0.2899967782079396|1.82|151.0|14|3|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|5|1|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|14|3|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|9|2|sense;AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|7|2|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|11|2|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|12|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|122|3|sense;ENSG00000129292|ENST00000395386|PHF20L1;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|29|1|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|7|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;ENSG00000025293|ENST00000374012|PHF20;ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;AluSq2_dup39075|chr11:117091190-117091504:-|1.470955180927242|0.0275977348529068|5.74|151.0|12|3|sense;AluSc_dup11622|chr6:15261303-15261619:-|1.3857046107551485|0.0084049862416929|7.37|151.0|4|1|sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|8|2|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|9|2|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|4|1|sense;AluSz_dup71985|chr13:46134841-46135136:+|1.001121318446743|0.069485534442065|3.85|151.0|14|3|sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|6|1|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|4|1|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|11|3|sense;AluJb_dup97408|chr15:64536595-64536939:+|1.1525906254041485|0.020058349977158|5.84|151.0|8|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|4|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|9|2|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|14|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|9|2|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|4|1|sense;AluY_dup54770|chrX:1498125-1498435:+|1.1865320543414275|0.0084966476498408|7.13|151.0|3|1|sense;AluSz_dup2843|chr1:44488709-44489029:-|2.021063283771314|0.001508016629532|10.39|149.0|3|1|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|4|1|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|3|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|8|2|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|7|2|sense;AluJo_dup16959|chr4:37673177-37673491:-|1.3339420807382287|0.0420036789527594|4.99|151.0|4|1|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|8|2|sense;AluY_dup20748|chr3:128744863-128745172:-|1.3995828524395022|0.0193729715410296|6.17|151.0|5|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|4|1|sense;AluSc8_dup17695|chr16:30264559-30264866:-|1.8841084479571768|0.0350316887477073|5.75|141.0|3|1|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|7|2|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|13|3|sense;AluSp_dup32895|chr12:48934732-48935048:+|1.320267927406906|0.2698896703621427|2.29|151.0|3|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|3|1|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|5|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|10|3|sense;AluSz_dup50139|chr9:121151379-121151690:-|1.1916663530598048|0.1011518170215417|3.56|151.0|6|2|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|8|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|2|1|sense;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense ENSG00000127616|ENST00000344626|SMARCA4;REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense;REV__AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense;REV__L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense;REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluY_dup17373|chr3:15767580-15767928:+|1.1812393589126209|0.0121093920601821|6.61|151.0|2|1|sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|6|2|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;ENSG00000025293|ENST00000374012|PHF20;ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense;REV__ENSG00000025293|ENST00000374012|PHF20;REV__ENSG00000111142|ENST00000323666|METAP2;REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__ENSG00000183354|ENST00000399933|KIAA2026;REV__ENSG00000235750|ENST00000423313|KIAA0040;REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF;REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense;REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;REV__L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|17|1|sense;REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense;Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense ENSG00000127616|ENST00000344626|SMARCA4 MSMS UPN46_class_I_Rep_3 1 586.4381103515625 2 586.439892 1170.86523 NaN NaN NaN NaN NaN NaN NaN 60.2 1 60.2 59.7 60.7 0 0 0 0 0.4029 1 13342 13342 0 0 1 17359 2570;18882;30419;823;23294;29907;392;51;3111;20784;151;286;303;18447;21309;24322;28990;21881;17618;397;13492;31654;345;131;75;247;179;30183;6255;27187;16352;33148 10897 10903 20977 20977 0.28663383895104744 KKKKKKKKKSF 11 Unmodified _KKKKKKKKKSF_ 0 0 0 ENST00000344423.9_1_8:28205640-28205820:-|nuORF REV__AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense REV__AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.735 1 29.735 29.235 30.235 0 0 0 0 0.38417 1 4750 4750 0.45452 0.35968 1 17360 6255 10898 10904 20978 20978 0.279389961581046 KKKKKKKKKVF 11 Unmodified _KKKKKKKKKVF_ 0 0 0 MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 473.3663635253906 3 473.341296 1417.00206 NaN NaN NaN NaN NaN NaN NaN 72.177 1 72.177 71.677 72.677 0 0 0 0 0.38417 1 16670 16670 0 0 1 17361 16352 10899 10905 20979 20979 0.3102387305480079 KKKKKKKKKYK 11 Unmodified _KKKKKKKKKYK_ 0 0 0 REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense REV__L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 488.7277526855469 3 488.348451 1462.02352 NaN NaN NaN NaN NaN NaN NaN 73.758 1 77.063 76.563 77.563 3.3048 0 0 0 0.38417 1 18153 18153 0 0 1 + 17362 24322 10900 10906 20980 20980 0.3109925808353182 KKKKKKKKLC 10 Unmodified _KKKKKKKKLC_ 0 0 0 ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;REV__AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|14|3|sense REV__AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 630.4415283203125 2 630.439035 1258.86352 NaN NaN NaN NaN NaN NaN NaN 119.33 1 122.89 122.39 123.39 3.566 0 0 0 0.53105 1 28360 28360 0 0 1 17363 3111;16962 10901 10907 20981 20981 0.24444006814860586 KKKKKKKKSKF 11 Unmodified _KKKKKKKKSKF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.869 1 22.869 22.369 23.369 0 0 0 0 0.38417 1 2783 2783 0.094841 0 1 + 17364 27187 10902 10908 20982 20982 0.279389961581046 KKKKKKKKSKF 11 Unmodified _KKKKKKKKSKF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 469.3270568847656 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 76.915 1 76.915 76.415 77.415 0 0 0 0 0.38417 1 17960 17960 0.094841 0 1 + 17365 27187 10902 10908 20983 20983 0.279389961581046 KKKKKKKKSKF 11 Unmodified _KKKKKKKKSKF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense MSMS UPN48_class_I_Rep_1 5 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 46.85 1 50.37 49.87 50.87 3.5192 0 0 0 0.38417 1 9193 9193 0.094841 0 1 + 17366 27187 10902 10908 20984 20984 0.279389961581046 KKKKKKKKSKF 11 Unmodified _KKKKKKKKSKF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|21|1|sense MSMS UPN48_class_I_Rep_1 5 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 65.921 1 69.372 68.872 69.872 3.4516 0 0 0 0.38417 1 15034 15034 0.094841 0 1 + 17367 27187 10902 10908 20985 20985 0.279389961581046 KKKKKKKSRY 10 Unmodified _KKKKKKKSRY_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense;L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense MSMS UPN46_class_I_Rep_3 1 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.511 1 29.511 29.011 30.011 0 0 0 0 0.53105 1 4684 4684 0.15932 0.01943 1 17368 12240 10903 10909 20986 20986 0.22417277055842533 KKKKKKKSRY 10 Unmodified _KKKKKKKSRY_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense;L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense MSMS UPN46_class_I_Rep_3 1 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.539 1 31.539 31.039 32.039 0 0 0 0 0.53105 1 5283 5283 0.15932 0.064481 1 17369 12240 10903 10909 20987 20987 0.22417277055842533 KKKKKKKSRY 10 Unmodified _KKKKKKKSRY_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense;L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense MSMS UPN47_class_I_Rep_3 4 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 55.503 1 58.681 58.181 59.181 3.1779 0 0 0 0.53105 1 12689 12689 0.12286 0.028024 1 17370 12240 10903 10909 20988 20988 0.22417277055842533 KKKKKKKSRY 10 Unmodified _KKKKKKKSRY_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense;L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense MSMS UPN47_class_I_Rep_3 4 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 57.06 1 60.233 59.733 60.733 3.1721 0 0 0 0.53105 1 13159 13159 0.12286 0.028024 1 17371 12240 10903 10909 20989 20989 0.22417277055842533 KKKKKKKSRY 10 Unmodified _KKKKKKKSRY_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense;L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|88|2|sense MSMS UPN48_class_I_Rep_1 5 441.29705810546875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 68.516 1 71.968 71.468 72.468 3.4517 0 0 0 0.53105 1 15827 15827 0.13989 0.04505 1 17372 12240 10903 10909 20990 20990 0.22417277055842533 KKKKKKKVRL 10 Unmodified _KKKKKKKVRL_ 0 0 0 REV__AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|9|2|sense REV__AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 642.4727172851562 2 642.471724 1282.92889 NaN NaN NaN NaN NaN NaN NaN 98.872 1 98.872 98.372 99.372 0 0 0 0 0.53105 1 24075 24075 0 0 1 + 17373 17236 10904 10910 20991 20991 0.29874744332232694 KKKKKKLFA 9 Unmodified _KKKKKKLFA_ 0 0 0 REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF MSMS UPN47_class_I_Rep_1 2 559.8944702148438 2 559.892244 1117.76993 NaN NaN NaN NaN NaN NaN NaN 107.9 1 111.53 111.03 112.03 3.6355 0 0 0 0.4007 1 26463 26463 0.52476 0 1 + 17374 22012 10905 10911 20992 20992 0.21576030704068216 KKKKKKTKGS 10 Unmodified _KKKKKKTKGS_ 0 0 0 HAL1_dup11251|chr8:25218864-25220042:-|2.0141950745151465|0.0170253830915309|6.89|151.0|15|2|sense HAL1_dup11251|chr8:25218864-25220042:-|2.0141950745151465|0.0170253830915309|6.89|151.0|15|2|sense HAL1_dup11251|chr8:25218864-25220042:-|2.0141950745151465|0.0170253830915309|6.89|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 580.896240234375 2 580.895515 1159.77648 NaN NaN NaN NaN NaN NaN NaN 106.64 1 106.64 106.14 107.14 0 0 0 0 0.53105 1 26004 26004 0 0 1 17375 7786 10906 10912 20993 20993 0.20297923864814038 KKKKKKTKT 9 Unmodified _KKKKKKTKT_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.3927001953125 2 559.392608 1116.77066 0.45768 0.00025602 1.0911 0.00061038 1.5488 0.0008664 559.3924414751956 108.07 0.47231 111.7 111.46 111.93 3.6313 109 39 4 0 0 0 0.50088 1 26066 26066 0.52476 0 1 13453000 + 17376 24414 10907 10913 20994 20994 0.21694825353142733 KKKKKKTKT 9 Unmodified _KKKKKKTKT_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.3924560546875 2 559.392608 1116.77066 0.41556 0.00023246 0.18579 0.00010393 0.60134 0.00033639 559.3925073120826 107.94 0.22138 111.62 111.44 111.66 3.6813 34 22 3 0 0 0 0.50088 1 25483 25483 0.52476 0 1 8896300 + 17377 24414 10907 10913 20995 20995 0.21694825353142733 KKKKKKTKT 9 Unmodified _KKKKKKTKT_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 559.392608 1116.77066 0.6349 0.00035516 -0.26586 -0.00014872 0.36904 0.00020644 559.3923689224505 108.09 0.21807 111.62 111.43 111.65 3.5333 -0.034468 -0.00026929 NaN 0.52476 57 27 3 NaN NaN NaN NaN 0 NaN NaN 0 13286000 + 17378 24414 10907 10913 0.21694825353142733 KKKKKKTLRDY 11 Unmodified _KKKKKKTLRDY_ 0 0 0 L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|4|1|sense L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|4|1|sense L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 478.82904052734375 3 479.308432 1434.90347 0.17948 8.6026E-05 1.0804 0.00051787 1.2599 0.00060389 479.3088688442782 49.674 0.19608 53.369 53.22 53.416 3.6946 16 12 2 0 0 0 22.551 1 10061 10061 0 0 1 83940 17379 13941 10908 10914 20996 20996 0.2034122501913771 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN46_class_I_Rep_3 1 419.31549072265625 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 51.008 1 51.008 50.508 51.508 0 0 0 0 0.53105 1 10811 10811 0 0 1 + 17380 20926 10909 10915 20997 20997 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN46_class_I_Rep_3 1 419.3154602050781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 51.496 1 51.496 50.996 51.996 0 0 0 0 0.53105 1 10951 10951 0 0 1 + 17381 20926 10909 10915 20998 20998 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN46_class_I_Rep_3 1 419.3155212402344 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 54.008 1 54.008 53.508 54.508 0 0 0 0 0.53105 1 11664 11664 0 0 1 + 17382 20926 10909 10915 20999 20999 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN46_class_I_Rep_3 1 419.3155212402344 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 58.806 1 58.806 58.306 59.306 0 0 0 0 0.53105 1 12964 12964 0 0 1 + 17383 20926 10909 10915 21000 21000 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN46_class_I_Rep_3 1 419.3153381347656 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 63.95 1 63.95 63.45 64.45 0 0 0 0 0.53105 1 14369 14369 0 0 1 + 17384 20926 10909 10915 21001 21001 0.3054822610070005 KKKKKKYLHPR 11 Unmodified _KKKKKKYLHPR_ 0 0 0 REV__AluJo_dup26725|chr7:1534900-1535211:-|1.3578795531246766|0.483455435591366|1.49|151.0|7|2|sense REV__AluJo_dup26725|chr7:1534900-1535211:-|1.3578795531246766|0.483455435591366|1.49|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 485.3189392089844 3 485.320784 1452.94052 NaN NaN NaN NaN NaN NaN NaN 29.428 1 32.752 32.252 33.252 3.3235 0 0 0 0.38417 1 4756 4756 0.094841 0.094841 1 + 17385 16993 10910 10916 21002 21002 0.23216941355531162 KKKKKLHIVIS 11 Unmodified _KKKKKLHIVIS_ 0 0 0 L1MCa_dup1179|chr3:23425728-23427138:+|1.2426051081476763|0.0156631298316258|6.31|151.0|10|1|sense L1MCa_dup1179|chr3:23425728-23427138:+|1.2426051081476763|0.0156631298316258|6.31|151.0|10|1|sense L1MCa_dup1179|chr3:23425728-23427138:+|1.2426051081476763|0.0156631298316258|6.31|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 441.2974548339844 3 441.306252 1320.89693 NaN NaN NaN NaN NaN NaN NaN 83.814 1 87.412 86.912 87.912 3.5973 0 0 0 0.38417 1 20053 20053 0.08335 0.08335 1 17386 11778 10911 10917 21003 21003 0.2493133185841998 KKKKKPPH 8 Unmodified _KKKKKPPH_ 0 0 0 REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF MSMS UPN48_class_I_Rep_3 7 495.6119689941406 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 31.065 1 34.779 34.279 35.279 3.7146 0 0 0 0.40746 1 4551 4551 0.69038 0 1 + 17387 21881 10912 10918 21004 21004 0.15458042430316254 KKKKKPPH 8 Unmodified _KKKKKPPH_ 0 0 0 REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF MSMS UPN48_class_I_Rep_3 7 495.7191162109375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 39.749 1 43.405 42.905 43.905 3.6557 0 0 0 0.40746 1 6990 6990 0.69038 0 1 + 17388 21881 10912 10918 21005 21005 0.15458042430316254 KKKKKPPH 8 Unmodified _KKKKKPPH_ 0 0 0 REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF REV__ENST00000357731.9_1_1:72748195-72748351:-|nuORF MSMS UPN48_class_I_Rep_3 7 495.8333435058594 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 119.48 1 123.05 122.55 123.55 3.566 0 0 0 0.40746 1 28396 28396 0.69038 0 1 + 17389 21881 10912 10918 21006 21006 0.15458042430316254 KKKKKQAWW 9 Unmodified _KKKKKQAWW_ 0 0 0 AluJo_dup24307|chr6:37862405-37862733:+|1.1796277739003815|0.0103762539354212|6.83|151.0|2|1|sense AluJo_dup24307|chr6:37862405-37862733:+|1.1796277739003815|0.0103762539354212|6.83|151.0|2|1|sense AluJo_dup24307|chr6:37862405-37862733:+|1.1796277739003815|0.0103762539354212|6.83|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 615.8786010742188 2 615.877125 1229.7397 NaN NaN NaN NaN NaN NaN NaN 34.996 1 38.51 38.01 39.01 3.5144 0 0 0 0.4007 1 5668 5668 0.52476 0.12405 1 17390 96 10913 10919 21007 21007 0.13401672038889956 KKKKKQFFY 9 Unmodified _KKKKKQFFY_ 0 0 0 REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|92|1|anti-sense REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|92|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 623.38232421875 2 622.879333 1243.74411 0.51187 0.00031883 0.48799 0.00030396 0.99986 0.00062279 622.8795131630538 108.42 0.18604 111.96 111.88 112.07 3.5382 27 19 2 0 0 0 0.50088 1 26557 26557 0.52476 0.12405 1 2878400 + 17391 28962 10914 10920 21008 21008 0.13199136461798844 KKKKKQFFY 9 Unmodified _KKKKKQFFY_ 0 0 0 REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|92|1|anti-sense REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|92|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 622.879333 1243.74411 0.51187 0.00031883 0.48799 0.00030396 0.99986 0.00062279 622.8795131630538 108.42 0.18604 111.96 111.88 112.07 3.5382 -0.049019 0.0001133 NaN 0.52476 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2878400 + 17392 28962 10914 10920 0.13199136461798844 KKKKKQFFY 9 Unmodified _KKKKKQFFY_ 0 0 0 REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|92|1|anti-sense REV__L1PA10_dup3542|chr9:2773426-2775753:+|2.647727485968673|0.3053814841215909|3.12|151.0|92|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 622.879333 1243.74411 0.49357 0.00030743 0.12075 7.5215E-05 0.61432 0.00038265 622.879376471245 108.36 0.068436 112.03 112.02 112.09 3.6746 0.021195 -0.00034419 NaN 0.52476 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1420600 + 17393 28962 10914 10920 0.13199136461798844 KKKKKQFHQKV 11 Unmodified _KKKKKQFHQKV_ 0 0 0 L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 476.3062744140625 3 476.305022 1425.89324 NaN NaN NaN NaN NaN NaN NaN 87.819 1 87.819 87.319 88.319 0 0 0 0 0.38417 1 21063 21063 0.50596 0.34663 1 17394 13618 10915 10921 21009 21009 0.19732662084538788 KKKKKQFHQKV 11 Unmodified _KKKKKQFHQKV_ 0 0 0 L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 476.30609130859375 3 476.305022 1425.89324 NaN NaN NaN NaN NaN NaN NaN 112.01 1 112.01 111.51 112.51 0 0 0 0 0.38417 1 27641 27641 0.50596 0.36606 1 17395 13618 10915 10921 21010 21010 0.19732662084538788 KKKKKQFHQKV 11 Unmodified _KKKKKQFHQKV_ 0 0 0 L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 476.3063659667969 3 476.305022 1425.89324 NaN NaN NaN NaN NaN NaN NaN 113.14 1 113.14 112.64 113.64 0 0 0 0 0.38417 1 27942 27942 0.45452 0.31463 1 17396 13618 10915 10921 21011 21011 0.19732662084538788 KKKKKQFHQKV 11 Unmodified _KKKKKQFHQKV_ 0 0 0 L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 476.30615234375 3 476.305022 1425.89324 NaN NaN NaN NaN NaN NaN NaN 118.97 1 118.97 118.47 119.47 0 0 0 0 0.38417 1 29553 29553 0.50596 0.36606 1 17397 13618 10915 10921 21012 21012 0.19732662084538788 KKKKKSFLY 9 Unmodified _KKKKKSFLY_ 0 0 0 REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|160|1|anti-sense REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|160|1|anti-sense MSMS UPN48_class_I_Rep_2 6 585.793701171875 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 54.236 1 57.818 57.318 58.318 3.5817 0 0 0 0.40038 1 11444 11444 0.6015 0 1 + 17398 29291 10916 10922 21013 21013 0.15559734087514698 KKKKKTKTK 9 Unmodified _KKKKKTKTK_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.8942260742188 2 559.392608 1116.77066 0.49548 0.00027717 -0.011421 -6.3889E-06 0.48406 0.00027078 559.3925361471458 107.86 0.20317 111.54 111.39 111.59 3.6783 24 20 2 0 0 0 0.50088 1 25527 25527 0.52476 0 1 4649500 + 17399 24414 10917 10923 21014 21014 0.21694825353119995 KKKKKWKDK 9 Unmodified _KKKKKWKDK_ 0 0 0 L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|26|2|sense L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|26|2|sense L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|26|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 405.9325256347656 3 406.267797 1215.78156 -1.2445 -0.00050561 -0.65731 -0.00026704 -1.9018 -0.00077265 406.2675517300857 33.832 0.36224 37.107 36.842 37.205 3.2748 32 24 2 0 0 0 0.12527 1 6069 6069 0.86438 0 1 105890 17400 11692 10918 10924 21015 21015 0.18230227727417514 KKKKLHQKVGK 11 Unmodified _KKKKLHQKVGK_ 0 0 0 L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|65|3|sense L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|65|3|sense L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|65|3|sense MSMS UPN46_class_I_Rep_3 1 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.22 1 30.22 29.72 30.72 0 0 0 0 0.38417 1 4890 4890 0.45452 0 1 17401 14839 10919 10925 21016 21016 0.22417277055797058 KKKKLKGIHY 10 Unmodified _KKKKLKGIHY_ 0 0 0 L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|34|3|sense L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|34|3|sense L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|34|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 414.26959228515625 3 414.93968 1241.79721 -0.59588 -0.00024725 -0.77758 -0.00032265 -1.3735 -0.0005699 415.27299246908245 115.97 0.14893 119.43 119.36 119.51 3.462 19 17 2 0 0 0 0.84575 1 28516 28516 0.15932 0 1 19337 17402 12290 10920 10926 21017 21017 0.18598514244467879 KKKKLWHR 8 Unmodified _KKKKLWHR_ 0 0 0 REV__L1PB1_dup7205|chr9:92552218-92554172:-|1.5845449506781664|0.0204218895227539|6.28|149.0|58|3|sense REV__L1PB1_dup7205|chr9:92552218-92554172:-|1.5845449506781664|0.0204218895227539|6.28|149.0|58|3|sense MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.364185 1122.71382 NaN NaN NaN NaN NaN NaN NaN 41.16 1 41.16 40.66 41.66 0 0 0 0 0.40746 1 8043 8043 0.69038 0.16561 1 + 17403 30484 10921 10927 21018 21018 0.15736822587246024 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 510.3427429199219 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 87.961 1 91.408 90.908 91.908 3.4471 0 0 0 0.40798 1 21870 21870 0 0 1 17404 326 10922 10928 21019 21019 0.1599183600986862 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 510.342529296875 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 92.063 1 95.467 94.967 95.967 3.4034 0 0 0 0.40798 1 22996 22996 0 0 1 17405 326 10922 10928 21020 21020 0.1599183600986862 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 510.3421325683594 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 93.285 1 96.69 96.19 97.19 3.4052 0 0 0 0.40798 1 23261 23261 0 0 1 17406 326 10922 10928 21021 21021 0.1599183600986862 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 510.3422546386719 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 95.082 1 98.491 97.991 98.991 3.4095 0 0 0 0.40798 1 23644 23644 0 0 1 17407 326 10922 10928 21022 21022 0.1599183600986862 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN48_class_I_Rep_1 5 510.2480773925781 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 75.747 1 79.246 78.746 79.746 3.4996 0 0 0 0.40798 1 17964 17964 0 0 1 17408 326 10922 10928 21023 21023 0.1599183600986862 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN48_class_I_Rep_1 5 510.34259033203125 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 83.54 1 87.127 86.627 87.627 3.5871 0 0 0 0.40798 1 19981 19981 0 0 1 17409 326 10922 10928 21024 21024 0.1599183600986862 KKKKMKTK 8 Unmodified _KKKKMKTK_ 0 0 0 AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN48_class_I_Rep_2 6 510.3433532714844 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 91.795 1 95.558 95.058 96.058 3.7629 0 0 0 0.40798 1 21857 21857 0 0 1 17410 326 10922 10928 21025 21025 0.1599183600986862 KKKKNGLLKKH 11 Unmodified _KKKKNGLLKKH_ 0 0 0 L1MC5a_dup5231|chr5:76923004-76923487:-|1.1444872003917648|0.0013140792953743|9.77|148.0|26|2|anti-sense L1MC5a_dup5231|chr5:76923004-76923487:-|1.1444872003917648|0.0013140792953743|9.77|148.0|26|2|anti-sense L1MC5a_dup5231|chr5:76923004-76923487:-|1.1444872003917648|0.0013140792953743|9.77|148.0|26|2|anti-sense MSMS UPN48_class_I_Rep_1 5 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 64.365 1 67.823 67.323 68.323 3.4578 0 0 0 0.38417 1 14564 14564 0.50596 0.34663 1 17411 11752 10923 10929 21026 21026 0.22417277055819795 KKKKTHEQ 8 Unmodified _KKKKTHEQ_ 0 0 0 L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|72|3|sense L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|72|3|sense L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|72|3|sense MSMS UPN47_class_I_Rep_3 4 513.8070678710938 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 117.15 1 120.59 120.09 121.09 3.4425 0 0 0 0.40753 1 28850 28850 0.6015 0 1 17412 8807 10924 10930 21027 21027 0.08640253945759468 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 537.8137817382812 2 537.3795 1072.74445 0.35258 0.00018947 0.79567 0.00042758 1.1483 0.00061705 537.3798457084807 108.82 0.24175 108.82 108.68 108.92 0 37 21 2 0 0 0 0.12551 1 26641 26641 0 0 1 8129900 17413 6313 10925 10931 21028 21028 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 537.3797607421875 2 537.3795 1072.74445 0.50585 0.00027183 0.079492 4.2718E-05 0.58534 0.00031455 537.3793494014466 108.19 0.10886 111.82 111.76 111.86 3.6355 34 10 4 0 0 0 0.50582 1 26545 26545 0 0 1 11475000 17414 6313 10925 10931 21029 21029 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 537.3796997070312 2 537.3795 1072.74445 0.50568 0.00027174 0.11915 6.4027E-05 0.62483 0.00033577 537.3794075926077 108.27 0.27951 111.91 111.86 112.14 3.6355 78 27 3 0 0 0 0.50582 1 26590 26590 0 0 1 9367000 17415 6313 10925 10931 21030 21030 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 537.813232421875 2 537.3795 1072.74445 0.50498 0.00027137 0.32083 0.00017241 0.82581 0.00044377 537.3794934572064 108.67 0.071548 112.31 112.28 112.35 3.6355 8 5 2 0 0 0 0.12551 1 26733 26733 0 0 1 2512100 17416 6313 10925 10931 21031 21031 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 537.3797607421875 2 537.3795 1072.74445 0.57796 0.00031058 0.058192 3.1271E-05 0.63615 0.00034185 537.3794034020422 108.19 0.44553 111.72 111.46 111.9 3.5333 102 48 3 0 0 0 0.50582 4 26154 26154;26193;26230;26274 0 0 1 16375000 17417 6313 10925 10931 21032;21033;21034;21035 21032 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.3797607421875 2 537.3795 1072.74445 0.35209 0.00018921 0.10611 5.7022E-05 0.45821 0.00024623 537.3794049441506 108.11 0.41711 111.74 111.51 111.93 3.6313 90 35 4 0 0 0 0.50582 1 26098 26098 0 0 1 11668000 17418 6313 10925 10931 21036 21036 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.379638671875 2 537.3795 1072.74445 0.35196 0.00018914 0.26956 0.00014486 0.62152 0.00033399 537.3794968508014 108.41 0.1724 112.04 111.95 112.12 3.6313 36 13 4 0 0 0 0.50582 1 26207 26207 0 0 1 6333400 17419 6313 10925 10931 21037 21037 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.3794555664062 2 537.3795 1072.74445 0.45933 0.00024684 0.22723 0.00012211 0.68656 0.00036895 537.3794441706516 108.02 0.11688 111.69 111.59 111.71 3.6746 31 10 4 0 0 0 0.50582 1 25569 25569 0 0 1 14782000 17420 6313 10925 10931 21038 21038 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.3797607421875 2 537.3795 1072.74445 0.4593 0.00024682 0.25294 0.00013592 0.71224 0.00038274 537.3794900746797 108.2 0.41965 111.87 111.72 112.14 3.6746 172 47 4 0 0 0 0.50582 2 25607 25607;25652 0 0 1 39816000 17421 6313 10925 10931 21039;21040 21039 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.3785400390625 2 537.3795 1072.74445 0.45864 0.00024646 0.035274 1.8955E-05 0.49391 0.00026542 537.3792472963254 108.87 0.43842 112.54 112.2 112.64 3.6746 54 40 2 0 0 0 0.50582 1 25770 25770 0 0 1 5653100 17422 6313 10925 10931 21041 21041 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.3800048828125 2 537.3795 1072.74445 0.57135 0.00030703 0.18901 0.00010157 0.76036 0.0004086 537.3794441349015 107.96 0.1852 111.64 111.47 111.66 3.6813 34 18 4 0 0 0 0.50582 2 25466 25466;25507 0 0 1 8699100 17423 6313 10925 10931 21042;21043 21042 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.3797607421875 2 537.3795 1072.74445 0.57135 0.00030703 0.087757 4.7159E-05 0.65911 0.00035419 537.3793977353689 108.23 0.18996 111.92 111.87 112.06 3.6813 62 23 3 0 0 0 0.50582 1 25641 25641 0 0 1 42311000 17424 6313 10925 10931 21044 21044 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.380126953125 2 537.3795 1072.74445 0.57113 0.00030691 0.2467 0.00013257 0.81782 0.00043948 537.3794242205252 108.68 0.25565 112.36 112.25 112.51 3.6751 46 29 3 0 0 0 0.50582 1 25729 25729 0 0 1 5825800 17425 6313 10925 10931 21045 21045 0.21098556181664208 KKKKTKKKG 9 Unmodified _KKKKTKKKG_ 0 0 0 MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense;ENST00000360264.7_1_7:101898640-101898772:+|nuORF MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MLT1F2_dup221|chr1:110900656-110900851:-|2.062282390540004|0.0667831067428939|4.95|151.0|12|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 537.3795 1072.74445 0.35104 0.00018864 0.12216 6.5644E-05 0.47319 0.00025428 537.3793390507765 109 0.092865 112.63 112.55 112.65 3.6321 0.17226 -4.1641E-05 NaN 0 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1454900 17426 6313 10925 10931 0.21098556181664208 KKKKTKKLC 9 Unmodified _KKKKTKKLC_ 0 0 0 LTR37-int_dup968|chr13:51749391-51750916:-|3.1508464613385923|0.31569469825107|3.32|151.0|99|2|anti-sense LTR37-int_dup968|chr13:51749391-51750916:-|3.1508464613385923|0.31569469825107|3.32|151.0|99|2|anti-sense LTR37-int_dup968|chr13:51749391-51750916:-|3.1508464613385923|0.31569469825107|3.32|151.0|99|2|anti-sense MSMS UPN46_class_I_Rep_3 1 552.75732421875 2 552.867911 1103.72127 NaN NaN NaN NaN NaN NaN NaN 41.2 1 41.2 40.7 41.7 0 0 0 0 0.4029 1 8055 8055 0 0 1 17427 15626 10926 10932 21046 21046 0.1735579407268233 KKKKTKKTCIP 11 Unmodified _KKKKTKKTCIP_ 0 0 0 REV__AluSz6_dup38758|chr16:31119625-31119979:-|1.2844856692523572|0.4732170301841779|1.44|151.0|9|3|sense REV__AluSz6_dup38758|chr16:31119625-31119979:-|1.2844856692523572|0.4732170301841779|1.44|151.0|9|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 435.55914306640625 3 434.947847 1301.82171 0.14604 6.3518E-05 1.2238 0.00053229 1.3698 0.00059581 434.9482469363017 102.54 0.029198 102.54 102.53 102.56 0 4 2 2 0 0 0 22.551 1 25027 25027 0.094841 0 1 82600 + 17428 17233 10927 10933 21047 21047 0.18287406335684864 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 559.39208984375 2 559.392608 1116.77066 0.43415 0.00024286 0.25845 0.00014458 0.69261 0.00038744 559.3925893202866 108.63 0.15943 108.63 108.52 108.68 0 43 19 3 0 0 0 0.50582 1 26547 26547 0 0 1 6480800 17429 99 10928 10934 21048 21048 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 559.3928833007812 2 559.392608 1116.77066 NaN NaN NaN NaN NaN NaN NaN 108.67 1 108.67 108.17 109.17 0 0 0 0 0.4029 1 26592 26592 0 0 1 17430 99 10928 10934 21049 21049 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.8946533203125 2 559.392608 1116.77066 0.50353 0.00028167 0.10211 5.7118E-05 0.60564 0.00033879 559.3925805179572 108.09 0.24655 111.63 111.46 111.7 3.5382 52 29 2 0 0 0 0.50582 2 26377 26377;26416 0 0 1 10291000 17431 99 10928 10934 21050;21051 21050 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.3928833007812 2 559.392608 1116.77066 0.50367 0.00028175 0.1633 9.1349E-05 0.66697 0.0003731 559.3925289396655 108.25 0.21547 111.79 111.71 111.93 3.5382 50 21 4 0 0 0 0.50582 3 26457 26457;26467;26508 0 0 1 20791000 17432 99 10928 10934 21052;21053;21054 21052 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.3928833007812 2 559.392608 1116.77066 0.50355 0.00028168 0.091707 5.13E-05 0.59526 0.00033298 559.3926093658458 108.46 0.10099 112 111.94 112.05 3.5382 15 8 2 0 0 0 0.5015 1 26552 26552 0.45834 0 1 2078500 17433 99 10928 10934 21055 21055 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.392822265625 2 559.392608 1116.77066 0.45768 0.00025602 1.0911 0.00061038 1.5488 0.0008664 559.3924414751956 108.07 0.47231 111.7 111.46 111.93 3.6313 109 39 4 0 0 0 0.50582 2 26114 26114;26176 0 0 1 13453000 17434 99 10928 10934 21056;21057 21056 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.3928833007812 2 559.392608 1116.77066 0.49547 0.00027717 0.15211 8.5087E-05 0.64758 0.00036225 559.3925088318473 108.18 0.41231 111.86 111.72 112.13 3.6746 155 46 4 0 0 0 0.5015 3 25708 25608;25654;25708 0.45834 0 1 32851000 17435 99 10928 10934 21058;21059;21060 21060 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.3926391601562 2 559.392608 1116.77066 0.4151 0.00023221 0.11974 6.6981E-05 0.53484 0.00029919 559.3925610987798 108.16 0.20334 111.84 111.67 111.87 3.6813 21 17 2 0 0 0 0.50582 1 25564 25564 0 0 1 26221000 17436 99 10928 10934 21061 21061 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.3926391601562 2 559.392608 1116.77066 0.4155 0.00023243 0.16738 9.3629E-05 0.58288 0.00032606 559.392577499837 108.25 0.39334 111.93 111.76 112.15 3.6813 77 38 3 0 0 0 0.50582 1 25610 25610 0 0 1 25699000 17437 99 10928 10934 21062 21062 0.21694825353142733 KKKKTKTKK 9 Unmodified _KKKKTKTKK_ 0 0 0 AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense;AluSz_dup81833|chr16:23946846-23947155:-|1.186827389852816|0.0029254101745936|8.66|151.0|6|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense AluJo_dup2644|chr1:54253176-54253491:-|1.0327561988424525|0.1347950696657542|2.94|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 559.3929443359375 2 559.392608 1116.77066 NaN NaN NaN NaN NaN NaN NaN 108.42 1 112.1 111.6 112.6 3.6751 0 0 0 0.40098 1 25658 25658 0.45834 0 1 17438 99 10928 10934 21063 21063 0.21694825353142733 KKKKTTRHIK 10 Unmodified _KKKKTTRHIK_ 0 0 0 REV__L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|11|1|sense REV__L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 634.4191284179688 2 634.419688 1266.82482 NaN NaN NaN NaN NaN NaN NaN 60.243 1 63.717 63.217 64.217 3.4737 0 0 0 0.53105 1 13308 13308 0.40072 0 1 + 17439 25361 10929 10935 21064 21064 0.20208417504704812 KKKKVWREEKE 11 Unmodified _KKKKVWREEKE_ 0 0 0 ENST00000483997.5_1_20:13976316-14032584:+|nuORF;ENST00000492055.5_1_20:13976316-14032491:+|nuORF;ENST00000494602.5_1_20:13976409-14547255:+|nuORF;ENST00000477147.5_1_20:13976316-14474162:+|nuORF;nc|ENSG00000172264|A1Z1Q3|MACROD2;ENSG00000172264|ENST00000684519|MACROD2 ENST00000483997.5_1_20:13976316-14032584:+|nuORF ENST00000483997.5_1_20:13976316-14032584:+|nuORF MSMS UPN48_class_I_Rep_1 5 496.2939758300781 3 496.627942 1486.862 NaN NaN NaN NaN NaN NaN NaN 97.018 1 100.63 100.13 101.13 3.6088 0 0 0 0.38417 1 23400 23400 0.40827 0 1 17440 4567 10930 10936 21065 21065 0.13804044259791226 KKKLFKWITKW 11 Unmodified _KKKLFKWITKW_ 0 0 0 REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|34|2|sense REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 502.9847412109375 3 502.650018 1504.92823 0.1988 9.9928E-05 0.32183 0.00016177 0.52063 0.00026169 502.9845705981332 105.87 0.65805 109.5 109.11 109.76 3.6277 203 85 3 0 0 0 0.65891 1 25464 25464 2.4348 1.9803 1 1602500 + 17441 25464 10931 10937 21066 21066 0.19595904892503313 KKKLFKWITKW 11 Unmodified _KKKLFKWITKW_ 0 0 0 REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|34|2|sense REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|34|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 502.650018 1504.92823 0.39048 0.00019628 -0.055154 -2.7723E-05 0.33533 0.00016855 502.6496848163988 106 0.090118 109.53 109.47 109.56 3.5345 0.11398 -0.00034067 NaN 2.4348 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 222280 + 17442 25464 10931 10937 0.19595904892503313 KKKLFKWITKW 11 Unmodified _KKKLFKWITKW_ 0 0 0 REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|34|2|sense REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|34|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 502.650018 1504.92823 0.30124 0.00015142 -0.95011 -0.00047757 -0.64886 -0.00032615 502.64944945876033 105.86 0.033165 109.39 109.37 109.4 3.5367 -0.022128 -0.0016902 NaN 2.4348 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 112240 + 17443 25464 10931 10937 0.19595904892503313 KKKLHLKGRT 10 Unmodified _KKKLHLKGRT_ 0 0 0 REV__AluSp_dup41108|chr16:89483547-89483838:+|1.2533035352494646|0.0129000443702004|6.6|151.0|9|2|sense REV__AluSp_dup41108|chr16:89483547-89483838:+|1.2533035352494646|0.0129000443702004|6.6|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 604.902587890625 2 604.901131 1207.78771 NaN NaN NaN NaN NaN NaN NaN 75.79 1 75.79 75.29 76.29 0 0 0 0 0.53105 1 17644 17644 0.40072 0 1 + 17444 17113 10932 10938 21067 21067 0.192127459589301 KKKLIFFFV 9 Unmodified _KKKLIFFFV_ 0 0 0 ENST00000273038.7_1_3:11597946-11598108:-|nuORF ENST00000273038.7_1_3:11597946-11598108:-|nuORF ENST00000273038.7_1_3:11597946-11598108:-|nuORF MSMS UPN48_class_I_Rep_3 7 585.2706909179688 2 585.375895 1168.73724 NaN NaN NaN NaN NaN NaN NaN 25.064 1 28.833 28.333 29.333 3.769 0 0 0 0.40038 1 2995 2995 0.6015 0.14316 1 17445 6013 10933 10939 21068 21068 0.1596182358121041 KKKLIFFFV 9 Unmodified _KKKLIFFFV_ 0 0 0 ENST00000273038.7_1_3:11597946-11598108:-|nuORF ENST00000273038.7_1_3:11597946-11598108:-|nuORF ENST00000273038.7_1_3:11597946-11598108:-|nuORF MSMS UPN48_class_I_Rep_3 7 585.3744506835938 2 585.375895 1168.73724 NaN NaN NaN NaN NaN NaN NaN 35.959 1 39.626 39.126 40.126 3.6667 0 0 0 0.40038 1 5893 5893 0.6015 0.14316 1 17446 6013 10933 10939 21069 21069 0.1596182358121041 KKKLIGYL 8 Unmodified _KKKLIGYL_ 0 0 0 REV__L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|32|2|sense REV__L1ME1_dup5587|chr3:31585601-31587050:-|2.213980522167855|0.0236215593414763|6.55|151.0|32|2|sense MSMS UPN46_class_I_Rep_3 1 481.61785888671875 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 98.026 1 98.026 97.526 98.526 0 0 0 0 0.40738 1 23863 23863 0.79363 0 1 + 17447 27776 10934 10940 21070 21070 0.15008702104671556 KKKLKEKKIYE 11 Unmodified _KKKLKEKKIYE_ 0 0 0 L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense MSMS UPN48_class_I_Rep_1 5 478.97454833984375 3 478.972938 1433.89699 NaN NaN NaN NaN NaN NaN NaN 103.14 1 106.76 106.26 107.26 3.6164 0 0 0 0.38417 1 24866 24866 0.094841 0 1 17448 11672 10935 10941 21071 21071 0.1973928706775041 KKKLKGIH 8 Unmodified _KKKLKGIH_ 0 0 0 L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|34|3|sense L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|34|3|sense L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|34|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3265686035156 2 476.326737 950.63892 0.075622 3.6021E-05 0.074102 3.5297E-05 0.14972 7.1318E-05 476.32660027211284 33.608 0.08493 33.608 33.595 33.68 0 6 5 2 0 0 0 0.82752 1 5907 5907 0.79363 0 1 280160 17449 12290 10936 10942 21072 21072 0.1616264005605217 KKKLKQKE 8 Unmodified _KKKLKQKE_ 0 0 0 REV__ENSG00000106804|ENST00000223642|C5 REV__ENSG00000106804|ENST00000223642|C5 MSMS UPN46_class_I_Rep_3 1 515.799560546875 2 515.342584 1028.67061 NaN NaN NaN NaN NaN NaN NaN 85.733 1 85.733 85.233 86.233 0 0 0 0 0.40746 1 20467 20467 0.69038 0 1 + 17450 18341 10937 10943 21073 21073 0.15742588019338655 KKKLKTLH 8 Unmodified _KKKLKTLH_ 0 0 0 REV__L1MC1_dup5699|chr6:166375414-166376085:-|2.01633353107336|0.4227623839002054|2.25|151.0|14|2|sense REV__L1MC1_dup5699|chr6:166375414-166376085:-|2.01633353107336|0.4227623839002054|2.25|151.0|14|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.3399353027344 2 498.339844 994.665135 0.13841 6.8973E-05 0.20741 0.00010336 0.34581 0.00017233 498.339920562054 34.122 0.086838 34.122 34.065 34.151 0 6 4 2 0 0 0 0.82752 1 6060 6060 0.79363 0 1 526940 + 17451 26584 10938 10944 21074 21074 0.16758909227519325 KKKLKTLIN 9 Unmodified _KKKLKTLIN_ 0 0 0 L1M4c_dup657|chr3:128756375-128756794:+|1.5334531755387295|0.0163746232423303|6.55|151.0|7|2|sense L1M4c_dup657|chr3:128756375-128756794:+|1.5334531755387295|0.0163746232423303|6.55|151.0|7|2|sense L1M4c_dup657|chr3:128756375-128756794:+|1.5334531755387295|0.0163746232423303|6.55|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 543.2852783203125 2 543.373884 1084.73321 NaN NaN NaN NaN NaN NaN NaN 57.764 1 57.764 57.264 58.264 0 0 0 0 0.4029 1 12676 12676 0 0 1 17452 9078 10939 10945 21075 21075 0.19423734087536104 KKKLKTLIN 9 Unmodified _KKKLKTLIN_ 0 0 0 L1M4c_dup657|chr3:128756375-128756794:+|1.5334531755387295|0.0163746232423303|6.55|151.0|7|2|sense L1M4c_dup657|chr3:128756375-128756794:+|1.5334531755387295|0.0163746232423303|6.55|151.0|7|2|sense L1M4c_dup657|chr3:128756375-128756794:+|1.5334531755387295|0.0163746232423303|6.55|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 543.3737182617188 2 543.373884 1084.73321 NaN NaN NaN NaN NaN NaN NaN 57.772 1 57.772 57.272 58.272 0 0 0 0 0.4029 1 12678 12678 0 0 1 17453 9078 10939 10945 21076 21076 0.19423734087536104 KKKLKTRK 8 Unmodified _KKKLKTRK_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.3668823242188 2 515.366393 1028.71823 0.28267 0.00014568 0.077498 3.994E-05 0.36017 0.00018562 515.3663415905927 108.18 0.43124 111.71 111.46 111.89 3.5333 96 46 3 0 0 0 0.82752 1 26141 26141 0.69038 0 1 21581000 17454 14554 10940 10946 21077 21077 0.20502287010185682 KKKLKTRK 8 Unmodified _KKKLKTRK_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.3659057617188 2 515.366393 1028.71823 0.24642 0.00012699 0.047728 2.4597E-05 0.29414 0.00015159 515.3663265265856 108.26 0.4048 111.89 111.52 111.93 3.6313 88 34 5 0 0 0 0.82752 2 26087 26087;26133 0.69038 0 1 15977000 17455 14554 10940 10946 21078;21079 21078 0.20502287010185682 KKKLKTRK 8 Unmodified _KKKLKTRK_ 0 0 0 L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense L1PA6_dup1103|chr3:87882879-87888478:+|7.893371612663678|0.0607915640963959|7.02|146.0|63|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.3665161132812 2 515.366393 1028.71823 0.34194 0.00017623 0.14019 7.225E-05 0.48214 0.00024848 515.3663626730502 108.22 0.4333 111.89 111.72 112.15 3.6746 186 49 4 0 0 0 0.82752 1 25686 25686 0.69038 0 1 47188000 17456 14554 10940 10946 21080 21080 0.20502287010185682 KKKLLKRKILW 11 Unmodified _KKKLLKRKILW_ 0 0 0 REV__L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense REV__L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 485.3487854003906 3 485.341296 1453.00206 NaN NaN NaN NaN NaN NaN NaN 64.438 1 64.438 63.938 64.938 0 0 0 0 0.38417 1 14501 14501 0.094841 0.094841 1 + 17457 28401 10941 10947 21081 21081 0.29367873054843585 KKKLLKRKILW 11 Unmodified _KKKLLKRKILW_ 0 0 0 REV__L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense REV__L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 485.3416748046875 3 485.341296 1453.00206 NaN NaN NaN NaN NaN NaN NaN 102.22 1 105.71 105.21 106.21 3.4873 0 0 0 0.38417 1 25142 25142 0 0 1 + 17458 28401 10941 10947 21082 21082 0.29367873054843585 KKKLLLKK 8 Unmodified _KKKLLLKK_ 0 0 0 REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 500.1795959472656 2 499.876062 997.737572 0.1989 9.9426E-05 4.413 0.002206 4.6119 0.0023054 500.3790396417317 43.702 0.024899 47.213 47.197 47.222 3.5103 4 2 2 0 0 0 0.72333 1 8232 8232 0 0 1 66239 + 17459 31281 10942 10948 21083 21083 0.23861243301098511 KKKLLLKK 8 Unmodified _KKKLLLKK_ 0 0 0 REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 500.267578125 2 499.876062 997.737572 0.17839 8.9175E-05 4.2046 0.0021018 4.383 0.002191 500.3791360133929 44.881 0.12337 48.519 48.469 48.592 3.6372 6 5 2 0 0 0 0.72333 1 8541 8541 0 0 1 42895 + 17460 31281 10942 10948 21084 21084 0.23861243301098511 KKKLLLKK 8 Unmodified _KKKLLLKK_ 0 0 0 REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 499.876062 997.737572 0.192 9.5976E-05 6.7122 0.0033553 6.9042 0.0034512 499.8800457944584 45.206 0.095089 48.723 48.651 48.746 3.5162 0.102 0.0010175 NaN 0 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 50753 + 17461 31281 10942 10948 0.23861243301098511 KKKLLLKK 8 Unmodified _KKKLLLKK_ 0 0 0 REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense REV__MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|80|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 499.876062 997.737572 0.21681 0.00010838 4.4491 0.002224 4.6659 0.0023324 499.87863283624074 43.433 0.10899 47.195 47.111 47.22 3.7617 -0.0088219 4.1534E-06 NaN 0 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 42799 + 17462 31281 10942 10948 0.23861243301098511 KKKLLLLDLIL 11 Unmodified _KKKLLLLDLIL_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_2 3 437.31072998046875 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 64.946 1 68.201 67.701 68.701 3.2556 0 0 0 0.38417 1 15505 15505 0 0 1 + 17463 23642 10943 10949 21085 21085 0.2687456456687869 KKKLLLLDLIL 11 Unmodified _KKKLLLLDLIL_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_2 3 437.31085205078125 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 77.076 1 80.408 79.908 80.908 3.3315 0 0 0 0.38417 1 19102 19102 0 0 1 + 17464 23642 10943 10949 21086 21086 0.2687456456687869 KKKLLLLDLIL 11 Unmodified _KKKLLLLDLIL_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_2 3 437.31085205078125 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 78.609 1 81.951 81.451 82.451 3.3428 0 0 0 0.38417 1 19532 19532 0 0 1 + 17465 23642 10943 10949 21087 21087 0.2687456456687869 KKKLLLLDLIL 11 Unmodified _KKKLLLLDLIL_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_2 3 437.3108825683594 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 80.309 1 83.679 83.179 84.179 3.3694 0 0 0 0.38417 1 20004 20004 0 0 1 + 17466 23642 10943 10949 21088 21088 0.2687456456687869 KKKLLLLDLIL 11 Unmodified _KKKLLLLDLIL_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_3 4 437.3110046386719 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 62.09 1 65.257 64.757 65.757 3.1667 0 0 0 0.38417 1 14695 14695 0 0 1 + 17467 23642 10943 10949 21089 21089 0.2687456456687869 KKKLLLLDLIL 11 Unmodified _KKKLLLLDLIL_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_3 4 437.3109436035156 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 62.39 1 65.557 65.057 66.057 3.1667 0 0 0 0.38417 1 14788 14788 0 0 1 + 17468 23642 10943 10949 21090 21090 0.2687456456687869 KKKLWLFEF 9 Unmodified _KKKLWLFEF_ 0 0 0 L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|105|1|anti-sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|105|1|anti-sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|105|1|anti-sense MSMS UPN48_class_I_Rep_3 7 619.8702392578125 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 84.576 1 88.326 87.826 88.826 3.7494 0 0 0 0.4007 1 20068 20068 0.52476 0.066424 1 17469 14073 10944 10950 21091 21091 0.11296331713219843 KKKNPLGVL 9 Unmodified _KKKNPLGVL_ 0 0 0 L1ME3_dup8526|chr20:3952011-3953103:-|2.372965325835165|0.0289578894247626|6.36|151.0|44|1|anti-sense L1ME3_dup8526|chr20:3952011-3953103:-|2.372965325835165|0.0289578894247626|6.36|151.0|44|1|anti-sense L1ME3_dup8526|chr20:3952011-3953103:-|2.372965325835165|0.0289578894247626|6.36|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 498.8318786621094 2 498.831852 995.649151 0.1952 9.7371E-05 -0.24247 -0.00012095 -0.047274 -2.3582E-05 498.83174113734594 51.128 0.62833 54.652 54.274 54.902 3.5246 49 37 2 0 0 0 0.46434 1 10520 10520 4.3292 0.73274 1 136160 17470 12613 10945 10951 21092 21092 0.15115202990614307 KKKQILKKII 10 Unmodified _KKKQILKKII_ 0 0 0 REV__nc|ENSG00000111879|Q8NB25-2|FAM184A REV__nc|ENSG00000111879|Q8NB25-2|FAM184A MSMS UPN46_class_I_Rep_3 1 620.4874267578125 2 620.447383 1238.88021 NaN NaN NaN NaN NaN NaN NaN 80.678 1 80.678 80.178 81.178 0 0 0 0 0.53105 1 19016 19016 0 0 1 + 17471 31962 10946 10952 21093 21093 0.2703283097248459 KKKQLIFF 8 Unmodified _KKKQLIFF_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|46|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|46|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|46|2|sense MSMS UPN47_class_I_Rep_1 2 525.8803100585938 2 526.33677 1050.65899 NaN NaN NaN NaN NaN NaN NaN 93.917 1 97.653 97.153 98.153 3.736 0 0 0 0.40738 1 23348 23348 0.79363 0 1 17472 8451 10947 10953 21094 21094 0.13568390996010748 KKKQSLTEV 9 Unmodified _KKKQSLTEV_ 0 0 0 REV__AluJo_dup11170|chr2:196159312-196159613:-|1.7045235669132883|0.0242942432397795|6.13|151.0|4|1|sense REV__AluJo_dup11170|chr2:196159312-196159613:-|1.7045235669132883|0.0242942432397795|6.13|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.8228149414062 2 530.821681 1059.62881 0.24635 0.00013077 -0.22059 -0.00011709 0.025767 1.3677E-05 530.8214017141856 73.726 0.46019 77.031 76.665 77.125 3.3048 63 40 2 0 0 0 0.49026 1 18152 18152 1.6526 0.17072 1 107040 + 17473 16979 10948 10954 21095 21095 0.10137987540133508 KKKRCKYK 8 Unmodified _KKKRCKYK_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MSMS UPN46_class_I_Rep_3 1 541.3385620117188 2 541.336778 1080.659 NaN NaN NaN NaN NaN NaN NaN 88.575 1 88.575 88.075 89.075 0 0 0 0 0.40746 1 21277 21277 0.69038 0.69038 1 17474 1404 10949 10955 21096 21096 0.12190067724327491 KKKRFKKKKKK 11 Unmodified _KKKRFKKKKKK_ 0 0 0 L1M3f_dup57|chr1:213185668-213186913:-|1.2307813740649065|0.0196004343331974|5.97|151.0|38|3|sense L1M3f_dup57|chr1:213185668-213186913:-|1.2307813740649065|0.0196004343331974|5.97|151.0|38|3|sense L1M3f_dup57|chr1:213185668-213186913:-|1.2307813740649065|0.0196004343331974|5.97|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 492.3528747558594 3 492.352195 1474.03476 NaN NaN NaN NaN NaN NaN NaN 30.858 1 30.858 30.358 31.358 0 0 0 0 0.38417 1 5083 5083 0 0 1 17475 8809 10950 10956 21097 21097 0.3167008017765056 KKKRFTIVMRK 11 Unmodified _KKKRFTIVMRK_ 0 0 0 REV__HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense REV__HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.97479248046875 3 478.974508 1433.90169 0.13566 6.4978E-05 0.26441 0.00012664 0.40007 0.00019162 479.30896543163044 42.454 0.93002 46.095 45.822 46.753 3.6415 148 76 3 0 0 0 0.68478 1 7808 7808 0.094841 0.094841 1 332940 + 17476 23764 10951 10957 21098 21098 0.20209892729508283 KKKRKKTSA 9 Unmodified _KKKRKKTSA_ 0 0 0 L1MDa_dup572|chr2:68230293-68231379:-|3.152216331414939|0.0163837362703101|7.59|151.0|13|2|sense L1MDa_dup572|chr2:68230293-68231379:-|3.152216331414939|0.0163837362703101|7.59|151.0|13|2|sense L1MDa_dup572|chr2:68230293-68231379:-|3.152216331414939|0.0163837362703101|7.59|151.0|13|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 537.379638671875 2 537.858932 1073.70331 0.57983 0.00031187 0.78399 0.00042168 1.3638 0.00073355 538.3597397908397 108.26 0.10442 111.79 111.73 111.84 3.5333 10 8 2 0 0 0 0.12551 1 26230 26230 0 0 1 1561500 17477 12138 10952 10958 21099 21099 0.1694079514220448 KKKRKLAP 8 Unmodified _KKKRKLAP_ 0 0 0 REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF MSMS UPN47_class_I_Rep_3 4 484.84002685546875 2 484.840011 967.665469 NaN NaN NaN NaN NaN NaN NaN 108.44 1 111.98 111.48 112.48 3.5382 0 0 0 0.40738 1 26544 26544 0.79363 0 1 17478 18234 10953 10959 21100 21100 0.1803432894736261 KKKRKLAP 8 Unmodified _KKKRKLAP_ 0 0 0 REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 484.8400573730469 2 484.840011 967.665469 0.23073 0.00011186 0.0077358 3.7506E-06 0.23846 0.00011562 484.8399259042568 108.24 0.52369 111.92 111.7 112.23 3.6813 162 52 4 0 0 0 0.82752 1 25561 25561 0.79363 0 1 70307000 17479 18234 10953 10959 21101 21101 0.1803432894736261 KKKRKQKKLCF 11 Unmodified _KKKRKQKKLCF_ 0 0 0 REV__AluSx1_dup84303|chr14:92657077-92657384:+|1.3214349773344751|0.0363840845470722|5.18|151.0|10|3|sense REV__AluSx1_dup84303|chr14:92657077-92657384:+|1.3214349773344751|0.0363840845470722|5.18|151.0|10|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 478.7452392578125 3 478.974508 1433.90169 0.22258 0.00010661 0.16857 8.074E-05 0.39115 0.00018735 479.3087499319948 47.394 0.25447 47.394 47.317 47.571 0 32 24 2 0 0 0 22.551 1 9806 9806 0.094841 0 1 306980 + 17480 17186 10954 10960 21102 21102 0.2020989272953102 KKKRKQKKLCF 11 Unmodified _KKKRKQKKLCF_ 0 0 0 REV__AluSx1_dup84303|chr14:92657077-92657384:+|1.3214349773344751|0.0363840845470722|5.18|151.0|10|3|sense REV__AluSx1_dup84303|chr14:92657077-92657384:+|1.3214349773344751|0.0363840845470722|5.18|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9745178222656 3 478.974508 1433.90169 0.12789 6.1257E-05 0.22126 0.00010598 0.34916 0.00016724 478.9745379909629 42.182 1.1537 45.69 45.229 46.383 3.5079 231 105 3 0 0 0 0.68478 1 7864 7864 0.094841 0 1 374240 + 17481 17186 10954 10960 21103 21103 0.2020989272953102 KKKRKQKKLCF 11 Unmodified _KKKRKQKKLCF_ 0 0 0 REV__AluSx1_dup84303|chr14:92657077-92657384:+|1.3214349773344751|0.0363840845470722|5.18|151.0|10|3|sense REV__AluSx1_dup84303|chr14:92657077-92657384:+|1.3214349773344751|0.0363840845470722|5.18|151.0|10|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.7453308105469 3 478.974508 1433.90169 0.13566 6.4978E-05 0.26441 0.00012664 0.40007 0.00019162 479.30896543163044 42.454 0.93002 46.095 45.822 46.753 3.6415 148 76 3 0 0 0 22.551 1 7882 7882 0.094841 0 1 332940 + 17482 17186 10954 10960 21104 21104 0.2020989272953102 KKKRNRMSSLI 11 Unmodified _KKKRNRMSSLI_ 0 0 0 REV__L1M4_dup13411|chr10:110942677-110943544:-|1.5238192692164518|0.0202407953542613|6.23|151.0|26|3|sense REV__L1M4_dup13411|chr10:110942677-110943544:-|1.5238192692164518|0.0202407953542613|6.23|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 454.27911376953125 3 454.278367 1359.81327 NaN NaN NaN NaN NaN NaN NaN 38.441 1 41.828 41.328 42.328 3.3879 0 0 0 0.38417 1 7443 7443 0.40827 0.24894 1 + 17483 24363 10955 10961 21105 21105 0.14775852419074909 KKKRNRRHH 9 Unmodified _KKKRNRRHH_ 0 0 0 ENSG00000153993|ENST00000284136|SEMA3D ENSG00000153993|ENST00000284136|SEMA3D ENSG00000153993|ENST00000284136|SEMA3D MSMS UPN46_class_I_Rep_3 1 630.3869018554688 2 630.387045 1258.75954 NaN NaN NaN NaN NaN NaN NaN 53.485 1 53.485 52.985 53.985 0 0 0 0 0.4007 1 11511 11511 0.52476 0 1 17484 3657 10956 10962 21106 21106 0.1405086082222624 KKKRTLLKT 9 Unmodified _KKKRTLLKT_ 0 0 0 REV__L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|36|3|sense REV__L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 558.3851928710938 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 102.19 1 105.7 105.2 106.2 3.5151 0 0 0 0.4007 1 24895 24895 0.52476 0 1 + 17485 24662 10957 10963 21107 21107 0.2022253883610574 KKKSCLVH 8 Unmodified _KKKSCLVH_ 0 0 0 ENST00000381026.3_2_13:28519621-28519690:+|nuORF;ENST00000243997.7_1_20:57603756-57603882:-|nuORF ENST00000381026.3_2_13:28519621-28519690:+|nuORF ENST00000381026.3_2_13:28519621-28519690:+|nuORF MSMS UPN48_class_I_Rep_2 6 471.79400634765625 2 471.781305 941.548056 NaN NaN NaN NaN NaN NaN NaN 116.21 1 119.87 119.37 120.37 3.6607 0 0 0 0.40625 1 27835 27835 2.3027 0 1 17486 5904 10958 10964 21108 21108 0.07494428016241272 KKKSPFDI 8 Unmodified _KKKSPFDI_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENST00000558202.1_1_15:35240356-35256599:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_3 4 481.7872314453125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 26.2 1 29.548 29.048 30.048 3.3478 0 0 0 0.40625 1 3797 3797 2.3027 0 1 17487 808 10959 10965 21109 21109 0.07734948311224343 KKKSPFDI 8 Unmodified _KKKSPFDI_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENST00000558202.1_1_15:35240356-35256599:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS UPN47_class_I_Rep_3 4 481.7878723144531 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 29.138 1 32.461 31.961 32.961 3.3235 0 0 0 0.40625 1 4668 4668 2.3027 0 1 17488 808 10959 10965 21110 21110 0.07734948311224343 KKKSQYTTY 9 Unmodified _KKKSQYTTY_ 0 0 0 L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|19|1|sense L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|19|1|sense L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|19|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.8106079101562 2 573.811313 1145.60807 -0.0964 -5.5315E-05 0.58825 0.00033755 0.49186 0.00028223 573.8117881607691 26.052 0.31392 29.814 29.755 30.069 3.7624 31 24 2 0 0 0 0.46869 1 3727 3727 3.9444 1.6417 1 42318 17489 10757 10960 10966 21111 21111 0.04109397160482331 KKKSQYTTY 9 Unmodified _KKKSQYTTY_ 0 0 0 L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|19|1|sense L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|19|1|sense L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|19|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 573.811313 1145.60807 0.046802 2.6855E-05 0.31628 0.00018148 0.36308 0.00020834 573.811445747558 26.629 0.055862 30.124 30.091 30.147 3.4945 0.15491 -0.00018911 NaN 3.9444 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 30017 17490 10757 10960 10966 0.04109397160482331 KKKTHVDQSNP 11 Unmodified _KKKTHVDQSNP_ 0 0 0 REV__Tigger1_dup2834|chr3:188236539-188238951:-|1.313908887563027|0.1181234244612777|3.48|151.0|4|1|sense REV__Tigger1_dup2834|chr3:188236539-188238951:-|1.313908887563027|0.1181234244612777|3.48|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 641.0156860351562 2 641.349126 1280.6837 NaN NaN NaN NaN NaN NaN NaN 44.457 1 48.152 47.652 48.652 3.6951 0 0 0 0.38417 1 9245 9245 1.0715 0.61312 1 + 17491 32410 10961 10967 21112 21112 0.054583743407420116 KKKTKKVFY 9 Unmodified _KKKTKKVFY_ 0 0 0 REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|30|3|sense REV__L1MC4a_dup9703|chr20:3346001-3346822:+|2.3799890000838677|0.1323094228654153|4.17|150.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 585.3743896484375 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 53.978 1 57.56 57.06 58.06 3.5817 0 0 0 0.4007 1 11364 11364 0.52476 0.066424 1 + 17492 27036 10962 10968 21113 21113 0.15559734087514698 KKKVKMRRKR 10 Unmodified _KKKVKMRRKR_ 0 0 0 nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121878388-121880774:-|nuORF nc|ENSG00000089094|Q8NHM5-4|KDM2B nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS UPN47_class_I_Rep_3 4 453.3056335449219 3 453.30648 1356.89761 NaN NaN NaN NaN NaN NaN NaN 115.69 1 119.15 118.65 119.65 3.462 0 0 0 0.53105 1 28453 28453 0.15932 0.064481 1 17493 1330 10963 10969 21114 21114 0.2334384802643399 KKKVKWKG 8 Unmodified _KKKVKWKG_ 0 0 0 REV__L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|85|2|sense REV__L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|85|2|sense MSMS UPN47_class_I_Rep_2 3 501.33648681640625 2 501.334562 1000.65457 NaN NaN NaN NaN NaN NaN NaN 101.52 1 105.03 104.53 105.53 3.5151 0 0 0 0.40746 1 24764 24764 0.69038 0 1 + 17494 29861 10964 10970 21115 21115 0.154269265730818 KKKVRALKHTI 11 Unmodified _KKKVRALKHTI_ 0 0 0 L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense MSMS UPN48_class_I_Rep_1 5 441.2971496582031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 60.372 1 63.845 63.345 64.345 3.4737 0 0 0 0.38417 1 13348 13348 0.45452 0.35968 1 17495 13018 10965 10971 21116 21116 0.22417277055819795 KKKWFLYK 8 Unmodified _KKKWFLYK_ 0 0 0 REV__Tigger2_dup1624|chr9:124963788-124965254:-|1.1908686379356008|0.0250923711891835|5.57|151.0|20|2|sense REV__Tigger2_dup1624|chr9:124963788-124965254:-|1.1908686379356008|0.0250923711891835|5.57|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 570.8485717773438 2 570.850045 1139.68554 NaN NaN NaN NaN NaN NaN NaN 77.076 1 77.076 76.576 77.576 0 0 0 0 0.40746 1 18003 18003 0.69038 0 1 + 17496 32638 10966 10972 21117 21117 0.12128079887315835 KKKWKPHH 8 Unmodified _KKKWKPHH_ 0 0 0 REV__ENSG00000174529|ENST00000367167|TMEM81 REV__ENSG00000174529|ENST00000367167|TMEM81 MSMS UPN48_class_I_Rep_1 5 544.827392578125 2 544.827435 1087.64032 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.25 115.75 116.75 3.6321 0 0 0 0.40746 1 27334 27334 0.69038 0 1 + 17497 20528 10967 10973 21118 21118 0.10000274144795185 KKKYIHKSRQ 10 Unmodified _KKKYIHKSRQ_ 0 0 0 REV__L1PA7_dup1907|chr2:240484228-240485047:+|1.3720431402463926|0.1462048202406085|3.23|151.0|5|1|sense REV__L1PA7_dup1907|chr2:240484228-240485047:+|1.3720431402463926|0.1462048202406085|3.23|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 439.2708435058594 3 439.270089 1314.78844 NaN NaN NaN NaN NaN NaN NaN 37.965 1 41.681 41.181 42.181 3.7164 0 0 0 0.53105 1 6556 6556 2.086 0.34373 1 + 17498 30036 10968 10974 21119 21119 0.14363540607951109 KKKYWQYLFLI 11 Unmodified _KKKYWQYLFLI_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|2|1|sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|2|1|sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 510.6340637207031 3 510.634146 1528.88061 NaN NaN NaN NaN NaN NaN NaN 100.16 1 100.16 99.656 100.66 0 0 0 0 0.38417 1 24412 24412 0.094841 0 1 17499 12188 10969 10975 21120 21120 0.1373220590164692 KKLAKKKKY 9 Unmodified _KKLAKKKKY_ 0 0 0 REV__ENSG00000119953|ENST00000369603|SMNDC1 REV__ENSG00000119953|ENST00000369603|SMNDC1 MSMS UPN47_class_I_Rep_1 2 567.8892822265625 2 567.889701 1133.76485 NaN NaN NaN NaN NaN NaN NaN 57.608 1 61.045 60.545 61.545 3.437 0 0 0 0.40038 1 13239 13239 0.6015 0 1 + 17500 18694 10970 10976 21121 21121 0.20331726841482123 KKLALALFKL 10 Unmodified _KKLALALFKL_ 0 0 0 MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|21|1|anti-sense MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|21|1|anti-sense MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_3 4 572.8926391601562 2 572.894452 1143.77435 NaN NaN NaN NaN NaN NaN NaN 108.17 1 111.71 111.21 112.21 3.5382 0 0 0 0.53105 1 26450 26450 1.6526 1.1279 1 17501 16493 10971 10977 21122 21122 0.2082149512698379 KKLANRIQ 8 Unmodified _KKLANRIQ_ 0 0 0 L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|158|3|sense L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|158|3|sense L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|158|3|sense MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 48.235 1 51.584 51.084 52.084 3.3492 0 0 0 0.40746 1 10410 10410 0.69038 0 1 17502 14202 10972 10978 21123 21123 0.12232861670997863 KKLCNKCLLA 10 Unmodified _KKLCNKCLLA_ 0 0 0 REV__ABCA9|p.Q182Sfs*5|1|0.33|ENSG00000154258|chr17:69044526-69044527|-/A|frameshift_variant REV__ABCA9|p.Q182Sfs*5|1|0.33|ENSG00000154258|chr17:69044526-69044527|-/A|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 567.3305053710938 2 567.330304 1132.64606 0.51519 0.00029228 -0.030044 -1.7045E-05 0.48515 0.00027524 567.3301540525977 81.431 0.59148 84.815 84.564 85.155 3.3839 108 67 2 0 0 0 0.56309 1 20289 20289 1.6526 0 1 138870 + 17503 16903 10973 10979 21124 21124 0.08503868549951221 KKLCPRVG 8 Unmodified _KKLCPRVG_ 0 0 0 REV__AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|14|3|sense REV__AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|14|3|sense MSMS UPN47_class_I_Rep_2 3 450.7763671875 2 450.776022 899.537492 NaN NaN NaN NaN NaN NaN NaN 85.884 1 89.317 88.817 89.817 3.4329 0 0 0 0.40746 1 21366 21366 0.69038 0 1 + 17504 16962 10974 10980 21125 21125 0.08370445361833845 KKLCVFFP 8 Unmodified _KKLCVFFP_ 0 0 0 L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|92|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|92|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|92|3|anti-sense MSMS UPN47_class_I_Rep_2 3 491.28436279296875 2 491.283149 980.551745 NaN NaN NaN NaN NaN NaN NaN 111.24 1 114.77 114.27 115.27 3.5226 0 0 0 0.40738 1 27073 27073 0.79363 0 1 17505 11695 10975 10981 21126 21126 0.06069097790100386 KKLEKFLD 8 Unmodified _KKLEKFLD_ 0 0 0 REV__ENSG00000197641|ENST00000344731|SERPINB13 REV__ENSG00000197641|ENST00000344731|SERPINB13 MSMS UPN47_class_I_Rep_2 3 510.8082580566406 2 510.808042 1019.60153 NaN NaN NaN NaN NaN NaN NaN 41.066 1 44.431 43.931 44.931 3.3655 0 0 0 0.40746 1 8238 8238 0.69038 0 1 + 17506 21090 10976 10982 21127 21127 0.09251503999769284 KKLFKKFLLLK 11 Unmodified _KKLFKKFLLLK_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 469.3277587890625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 29.035 1 32.527 32.027 33.027 3.4923 0 0 0 0.38417 1 4593 4593 0.094841 0.094841 1 + 17507 27897 10977 10983 21128 21128 0.2721826355768826 KKLFKKFLLLK 11 Unmodified _KKLFKKFLLLK_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 469.3290100097656 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 29.878 1 33.371 32.871 33.871 3.4923 0 0 0 0.38417 1 4847 4847 0.094841 0.094841 1 + 17508 27897 10977 10983 21129 21129 0.2721826355768826 KKLFKKFLLLK 11 Unmodified _KKLFKKFLLLK_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 469.3277587890625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 118.05 1 121.67 121.17 122.17 3.6215 0 0 0 0.38417 1 28784 28784 0.094841 0.094841 1 + 17509 27897 10977 10983 21130 21130 0.2721826355768826 KKLFKKFLLLK 11 Unmodified _KKLFKKFLLLK_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 469.3286437988281 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 19.803 1 23.452 22.952 23.952 3.6497 0 0 0 0.38417 1 1580 1580 0.094841 0.094841 1 + 17510 27897 10977 10983 21131 21131 0.2721826355768826 KKLFKKFLLLK 11 Unmodified _KKLFKKFLLLK_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 469.3283996582031 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 22.411 1 26.125 25.625 26.625 3.7144 0 0 0 0.38417 1 2283 2283 0.094841 0.094841 1 + 17511 27897 10977 10983 21132 21132 0.2721826355768826 KKLFKKFLLLK 11 Unmodified _KKLFKKFLLLK_ 0 0 0 REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense REV__L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 469.3288269042969 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 72.569 1 76.106 75.606 76.606 3.5373 0 0 0 0.38417 1 16923 16923 0.094841 0.094841 1 + 17512 27897 10977 10983 21133 21133 0.2721826355768826 KKLFWWVI 8 Unmodified _KKLFWWVI_ 0 0 0 REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 559.6651611328125 2 560.339313 1118.66407 0.43714 0.00024495 1.4702 0.00082383 1.9074 0.0010688 560.3397367467244 98.378 0.047234 98.378 98.356 98.403 0 8 5 2 0 0 0 0.72333 1 23945 23945 0.79363 0 1 83035 + 17513 25967 10978 10984 21134 21134 0.10948694858598174 KKLFWWVIKWL 11 Unmodified _KKLFWWVIKWL_ 0 0 0 REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense MSMS UPN48_class_I_Rep_1 5 516.31103515625 3 516.314747 1545.92241 NaN NaN NaN NaN NaN NaN NaN 95.885 1 99.497 98.997 99.997 3.6124 0 0 0 0.38417 1 23098 23098 0.094841 0.011491 1 + 17514 25967 10979 10985 21135 21135 0.1712880638083334 KKLFWWVIKWL 11 Unmodified _KKLFWWVIKWL_ 0 0 0 REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense MSMS UPN48_class_I_Rep_2 6 516.313720703125 3 516.314747 1545.92241 NaN NaN NaN NaN NaN NaN NaN 92.935 1 96.705 96.205 97.205 3.77 0 0 0 0.38417 1 22108 22108 0.094841 0 1 + 17515 25967 10979 10985 21136 21136 0.1712880638083334 KKLHMVVAP 9 Unmodified _KKLHMVVAP_ 0 0 0 REV__nc|ENSG00000163166|Q96ST2-2|IWS1 REV__nc|ENSG00000163166|Q96ST2-2|IWS1 MSMS UPN47_class_I_Rep_1 2 511.79705810546875 2 511.812605 1021.61066 NaN NaN NaN NaN NaN NaN NaN 65.788 1 69.145 68.645 69.645 3.3576 0 0 0 0.40038 1 15715 15715 0.6015 0 1 + 17516 19969 10980 10986 21137 21137 0.10071574084429358 KKLHTRVK 8 Unmodified _KKLHTRVK_ 0 0 0 REV__ENSG00000131848.9,ZSCAN5A,chr19,-,I6.1,56283888,56296067|36|7.64|1|intron REV__ENSG00000131848.9,ZSCAN5A,chr19,-,I6.1,56283888,56296067|36|7.64|1|intron MSMS UPN48_class_I_Rep_1 5 505.3168640136719 2 505.335093 1008.65563 NaN NaN NaN NaN NaN NaN NaN 107.92 1 111.56 111.06 112.06 3.6313 0 0 0 0.40472 1 26056 26056 4.3292 1.7518 1 + 17517 18987 10981 10987 21138 21138 0.15165140941974187 KKLIKIRYLF 10 Unmodified _KKLIKIRYLF_ 0 0 0 REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 441.2975769042969 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 105.32 1 105.32 104.82 105.82 0 0 0 0 0.53105 1 25693 25693 0.15932 0.064481 1 + 17518 24923 10982 10988 21139 21139 0.21696544455403455 KKLIKIRYLF 10 Unmodified _KKLIKIRYLF_ 0 0 0 REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 65.247 1 68.726 68.226 69.226 3.4792 0 0 0 0.53105 1 14817 14817 0.15932 0 1 + 17519 24923 10982 10988 21140 21140 0.21696544455403455 KKLIKIRYLF 10 Unmodified _KKLIKIRYLF_ 0 0 0 REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976989746094 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 68.216 1 71.725 71.225 72.225 3.5083 0 0 0 0.53105 1 15719 15719 0.15932 0.01943 1 + 17520 24923 10982 10988 21141 21141 0.21696544455403455 KKLIKIRYLF 10 Unmodified _KKLIKIRYLF_ 0 0 0 REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense REV__L1MA2_dup6449|chr14:76187583-76189920:-|2.3122638311529453|0.1212091086937743|4.25|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 441.2974853515625 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 86.918 1 90.709 90.209 91.209 3.7905 0 0 0 0.53105 1 20623 20623 0.15932 0.064481 1 + 17521 24923 10982 10988 21142 21142 0.21696544455403455 KKLLEQLTP 9 Unmodified _KKLLEQLTP_ 0 0 0 REV__L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|9|1|sense REV__L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 535.3357543945312 2 535.334424 1068.6543 NaN NaN NaN NaN NaN NaN NaN 109.9 1 109.9 109.4 110.4 0 0 0 0 0.37476 1 27036 27036 6.7232 1.4263 1 + 17522 30161 10983 10989 21143 21143 0.12271462062540195 KKLLNARRRVV 11 Unmodified _KKLLNARRRVV_ 0 0 0 ENST00000478558.1_1_1:153631742-153633774:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN ENST00000478558.1_1_1:153631742-153633774:+|nuORF ENST00000478558.1_1_1:153631742-153633774:+|nuORF MSMS UPN48_class_I_Rep_3 7 451.6243896484375 3 451.636883 1351.88882 NaN NaN NaN NaN NaN NaN NaN 44.937 1 48.574 48.074 49.074 3.6372 0 0 0 0.38417 1 8547 8547 0.094841 0.094841 1 17523 3310 10984 10990 21144 21144 0.22695197661619204 KKLNAWKRVH 10 Unmodified _KKLNAWKRVH_ 0 0 0 L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 427.2641906738281 3 427.263046 1278.76731 NaN NaN NaN NaN NaN NaN NaN 52.209 1 55.767 55.267 56.267 3.5585 0 0 0 0.53105 1 11602 11602 1.7423 0.52744 1 17524 12826 10985 10991 21145 21145 0.13907575299094788 KKLNAWKRVH 10 Unmodified _KKLNAWKRVH_ 0 0 0 L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 427.26422119140625 3 427.263046 1278.76731 NaN NaN NaN NaN NaN NaN NaN 52.455 1 56.014 55.514 56.514 3.5585 0 0 0 0.53105 1 11673 11673 1.7423 0.52744 1 17525 12826 10985 10991 21146 21146 0.13907575299094788 KKLNAWKRVH 10 Unmodified _KKLNAWKRVH_ 0 0 0 L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 427.2641906738281 3 427.263046 1278.76731 NaN NaN NaN NaN NaN NaN NaN 52.605 1 56.163 55.663 56.663 3.5585 0 0 0 0.53105 1 11719 11719 1.7423 0.52744 1 17526 12826 10985 10991 21147 21147 0.13907575299094788 KKLNAWKRVH 10 Unmodified _KKLNAWKRVH_ 0 0 0 L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 427.2642517089844 3 427.263046 1278.76731 NaN NaN NaN NaN NaN NaN NaN 53.305 1 56.833 56.333 57.333 3.5278 0 0 0 0.53105 1 11932 11932 1.7423 0.52744 1 17527 12826 10985 10991 21148 21148 0.13907575299094788 KKLNAWKRVH 10 Unmodified _KKLNAWKRVH_ 0 0 0 L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 427.2642517089844 3 427.263046 1278.76731 NaN NaN NaN NaN NaN NaN NaN 53.777 1 57.305 56.805 57.805 3.5278 0 0 0 0.53105 1 12077 12077 1.7423 0.7287 1 17528 12826 10985 10991 21149 21149 0.13907575299094788 KKLNAWKRVH 10 Unmodified _KKLNAWKRVH_ 0 0 0 L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 427.2642822265625 3 427.263046 1278.76731 NaN NaN NaN NaN NaN NaN NaN 54.799 1 58.301 57.801 58.801 3.5014 0 0 0 0.53105 1 12389 12389 1.7423 0.7287 1 17529 12826 10985 10991 21150 21150 0.13907575299094788 KKLPNHVF 8 Unmodified _KKLPNHVF_ 0 0 0 ENST00000478383.5_1_3:160821891-160822176:-|nuORF;ENST00000460353.1_1_3:160821276-160822176:-|nuORF;ENST00000320474.8_1_3:160821276-160822176:-|nuORF ENST00000478383.5_1_3:160821891-160822176:-|nuORF ENST00000478383.5_1_3:160821891-160822176:-|nuORF MSMS UPN46_class_I_Rep_3 1 491.7967224121094 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.969 1 59.969 59.469 60.469 0 0 0 0 0.39408 1 13285 13285 10.183 1.5901 1 17530 6148 10986 10992 21151 21151 0.08446074267999393 KKLPNIKMR 9 Unmodified _KKLPNIKMR_ 0 0 0 ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16 ENST00000503148.1_1_4:164438551-164440663:+|nuORF ENST00000503148.1_1_4:164438551-164440663:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.358642578125 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 77.455 1 77.455 76.955 77.955 0 0 0 0 0.39518 1 18105 18105 1.8442 1.1539 1 17531 5434 10987 10993 21152 21152 0.14258623412865745 KKLPNIKMR 9 Unmodified _KKLPNIKMR_ 0 0 0 ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16 ENST00000503148.1_1_4:164438551-164440663:+|nuORF ENST00000503148.1_1_4:164438551-164440663:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3593139648438 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 65.137 1 68.591 68.091 69.091 3.4541 0 0 0 0.39518 1 14797 14797 1.8442 0 1 17532 5434 10987 10993 21153 21153 0.14258623412865745 KKLPNIKMR 9 Unmodified _KKLPNIKMR_ 0 0 0 ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16 ENST00000503148.1_1_4:164438551-164440663:+|nuORF ENST00000503148.1_1_4:164438551-164440663:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3594360351562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 81.782 1 85.357 84.857 85.857 3.5753 0 0 0 0.39518 1 19511 19511 1.8442 1.3195 1 17533 5434 10987 10993 21154 21154 0.14258623412865745 KKLPNIKMR 9 Unmodified _KKLPNIKMR_ 0 0 0 ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16 ENST00000503148.1_1_4:164438551-164440663:+|nuORF ENST00000503148.1_1_4:164438551-164440663:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.0214233398438 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 76.111 1 79.694 79.194 80.194 3.5831 0 0 0 0.39518 1 17915 17915 1.8442 1.3195 1 17534 5434 10987 10993 21155 21155 0.14258623412865745 KKLQIYYKN 9 Unmodified _KKLQIYYKN_ 0 0 0 ENST00000374754.8_1_10:35328003-35333570:-|nuORF ENST00000374754.8_1_10:35328003-35333570:-|nuORF ENST00000374754.8_1_10:35328003-35333570:-|nuORF MSMS UPN47_class_I_Rep_3 4 599.351318359375 2 599.353148 1196.69174 NaN NaN NaN NaN NaN NaN NaN 42.238 1 45.478 44.978 45.978 3.2394 0 0 0 0.39428 1 8648 8648 2.0598 0 1 17535 6431 10988 10994 21156 21156 0.10126553328177579 KKLVVLMKWL 10 Unmodified _KKLVVLMKWL_ 0 0 0 REV__L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|48|3|sense REV__L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|48|3|sense MSMS UPN46_class_I_Rep_3 1 629.3822021484375 2 629.409412 1256.80427 NaN NaN NaN NaN NaN NaN NaN 25.568 1 25.568 25.068 26.068 0 0 0 0 0.53105 1 3528 3528 0.40072 0 1 + 17536 27361 10989 10995 21157 21157 0.1861411080067228 KKMAKVNKF 9 Unmodified _KKMAKVNKF_ 0 0 0 REV__L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|16|3|sense REV__L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|16|3|sense MSMS UPN48_class_I_Rep_3 7 547.3336181640625 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 64.725 1 68.234 67.734 68.734 3.5083 0 0 0 0.38478 1 14571 14571 4.3292 0.38484 1 + 17537 26914 10990 10996 21158 21158 0.10515245630199388 KKMGTKMK 8 Unmodified _KKMGTKMK_ 0 0 0 ENST00000513820.1_1_5:118462594-118462864:-|nuORF ENST00000513820.1_1_5:118462594-118462864:-|nuORF ENST00000513820.1_1_5:118462594-118462864:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 476.2771911621094 2 476.277541 950.540528 -0.38852 -0.00018504 0.010046 4.7848E-06 -0.37847 -0.00018026 476.2775294648866 13.929 0.40044 17.386 17.286 17.686 3.457 73 48 2 0 0 0 0.72333 1 442 442 0.69038 0.69038 1 72267 17538 7197 10991 10997 21159 21159 0.06327952424328487 KKMGTKMK 8 Unmodified _KKMGTKMK_ 0 0 0 ENST00000513820.1_1_5:118462594-118462864:-|nuORF ENST00000513820.1_1_5:118462594-118462864:-|nuORF ENST00000513820.1_1_5:118462594-118462864:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 476.2772521972656 2 476.277541 950.540528 -0.26455 -0.000126 0.057327 2.7303E-05 -0.20722 -9.8696E-05 476.2775824862099 14.028 0.33339 17.415 17.3 17.633 3.3871 55 37 2 0 0 0 0.82752 1 462 462 0.69038 0 1 58879 17539 7197 10991 10997 21160 21160 0.06327952424328487 KKMGTNKP 8 Unmodified _KKMGTNKP_ 0 0 0 L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|11|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|11|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 452.25543212890625 2 452.257662 902.500772 NaN NaN NaN NaN NaN NaN NaN 36.441 1 40.108 39.608 40.608 3.6667 0 0 0 0.40625 1 6032 6032 2.3027 0.24298 1 17540 9536 10992 10998 21161 21161 0.0456214874525358 KKMKGKKK 8 Unmodified _KKMKGKKK_ 0 0 0 REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF MSMS UPN47_class_I_Rep_2 3 488.3289794921875 2 488.328422 974.642291 NaN NaN NaN NaN NaN NaN NaN 92.333 1 95.799 95.299 96.299 3.4652 0 0 0 0.40798 1 22830 22830 0 0 1 + 17541 18044 10993 10999 21162 21162 0.15395566838401464 KKMKLFGF 8 Unmodified _KKMKLFGF_ 0 0 0 nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 MULTI-MSMS UPN46_class_I_Rep_3 1 499.7952880859375 2 499.796423 997.578294 -0.0035578 -1.7782E-06 -0.077534 -3.8751E-05 -0.081091 -4.0529E-05 499.7961403374363 27.592 0.82537 27.592 27.235 28.06 0 99 64 2 0 0 0 0.82752 1 4050 4050 2.3027 0 1 91897 17542 853 10994 11000 21163 21163 0.07940786681444933 KKMKVVPLL 9 Unmodified _KKMKVVPLL_ 0 0 0 nc|ENSG00000181982|Q6ZUS6-3|CCDC149 nc|ENSG00000181982|Q6ZUS6-3|CCDC149 nc|ENSG00000181982|Q6ZUS6-3|CCDC149 MSMS UPN47_class_I_Rep_3 4 528.3556518554688 2 528.354105 1054.69366 NaN NaN NaN NaN NaN NaN NaN 32.038 1 35.337 34.837 35.837 3.2991 0 0 0 0.39428 1 5538 5538 2.0598 0 1 17543 16766 10995 11001 21164 21164 0.16849890812432022 KKMPFRRW 8 Unmodified _KKMPFRRW_ 0 0 0 REV__ENSG00000158553|ENST00000444565|POM121L2 REV__ENSG00000158553|ENST00000444565|POM121L2 MULTI-MSMS UPN47_class_I_Rep_1 2 574.828857421875 2 574.829121 1147.64369 0.29826 0.00017145 1.1482 0.00066003 1.4465 0.00083148 574.8296442214364 53.438 0.54348 56.965 56.755 57.299 3.5278 63 36 2 0 0 0 0.82752 2 11951 11951;11993 0.69038 0.088878 1 110740 + 17544 19847 10996 11002 21165;21166 21165 0.07577200927153172 KKMPFRRW 8 Unmodified _KKMPFRRW_ 0 0 0 REV__ENSG00000158553|ENST00000444565|POM121L2 REV__ENSG00000158553|ENST00000444565|POM121L2 MULTI-MSMS UPN47_class_I_Rep_2 3 574.8302001953125 2 574.829121 1147.64369 0.51682 0.00029708 0.51943 0.00029859 1.0363 0.00059567 574.8292869661846 53.797 0.64175 57.124 56.794 57.436 3.3266 71 43 2 0 0 0 0.82752 1 12079 12079 0.69038 0.088878 1 117290 + 17545 19847 10996 11002 21167 21167 0.07577200927153172 KKMPLAPP 8 Unmodified _KKMPLAPP_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN48_class_I_Rep_2 6 441.2979431152344 2 441.267499 880.520445 NaN NaN NaN NaN NaN NaN NaN 51.938 1 55.577 55.077 56.077 3.639 0 0 0 0.40604 1 10748 10748 2.5775 0.51773 1 17546 3707 10997 11003 21168 21168 0.07540524756018385 KKMPSMTF 8 Unmodified _KKMPSMTF_ 0 0 0 Tigger1_dup5225|chr6:135328266-135330633:+|1.206020938935542|0.1335087502173522|3.18|151.0|30|2|sense Tigger1_dup5225|chr6:135328266-135330633:+|1.206020938935542|0.1335087502173522|3.18|151.0|30|2|sense Tigger1_dup5225|chr6:135328266-135330633:+|1.206020938935542|0.1335087502173522|3.18|151.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 485.24853515625 2 485.248449 968.482345 NaN NaN NaN NaN NaN NaN NaN 26.862 1 30.425 29.925 30.925 3.5629 0 0 0 0.40746 1 3368 3368 0.69038 0 1 17547 33117 10998 11004 21169 21169 -0.0031572922094937894 KKMQKESKL 9 Unmodified _KKMQKESKL_ 0 0 0 REV__ENSG00000091986|ENST00000206423|CCDC80 REV__ENSG00000091986|ENST00000206423|CCDC80 MSMS UPN48_class_I_Rep_1 5 560.3319702148438 2 560.331359 1118.64816 NaN NaN NaN NaN NaN NaN NaN 47.436 1 50.957 50.457 51.457 3.5219 0 0 0 0.37692 1 9375 9375 6.2058 2.2614 1 + 17548 18028 10999 11005 21170 21170 0.09358620559396513 KKMQLHGK 8 Unmodified _KKMQLHGK_ 0 0 0 ENSG00000256188|ENST00000539585|TAS2R30;ENSG00000255837|ENST00000538986|TAS2R20;ENSG00000226761|ENST00000533467|TAS2R46;nc|ENSG00000255374|P59539|TAS2R45;ENSG00000256436|ENST00000390675|TAS2R31;ENSG00000255374|ENST00000531678|TAS2R43 ENSG00000256188|ENST00000539585|TAS2R30 ENSG00000256188|ENST00000539585|TAS2R30 MSMS UPN47_class_I_Rep_2 3 485.3420715332031 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 102.46 1 105.98 105.48 106.48 3.5151 0 0 0 0.40746 1 24947 24947 0.69038 0 1 17549 5765 11000 11006 21171 21171 0.07341830390544146 KKMRHRFRSYW 11 Unmodified _KKMRHRFRSYW_ 0 0 0 L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|2|1|sense L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|2|1|sense L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|2|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 532.6244506835938 3 532.289378 1593.8463 0.27586 0.00014684 0.43693 0.00023257 0.7128 0.00037941 532.2896038992898 51.456 0.80272 51.456 51.139 51.942 0 228 90 4 0 0 0 22.551 1 10866 10866 0 0 1 1121400 17550 13414 11001 11007 21172 21172 0.07313479261779321 KKMSKVKG 8 Unmodified _KKMSKVKG_ 0 0 0 ENST00000410017.5_1_2:232665914-232672352:+|nuORF;nc|ENSG00000144524|Q9H9Q2-2|COPS7B;ENSG00000144524|ENST00000350033|COPS7B ENST00000410017.5_1_2:232665914-232672352:+|nuORF ENST00000410017.5_1_2:232665914-232672352:+|nuORF MSMS UPN46_class_I_Rep_3 1 453.2851257324219 2 453.28368 904.552807 NaN NaN NaN NaN NaN NaN NaN 81.994 1 81.994 81.494 82.494 0 0 0 0 0.40746 1 19396 19396 0.69038 0 1 17551 3358 11002 11008 21173 21173 0.09671312159025547 KKMSVFWCT 9 Unmodified _KKMSVFWCT_ 0 0 0 ENST00000415807.6_1_3:172115292-172115697:+|nuORF ENST00000415807.6_1_3:172115292-172115697:+|nuORF ENST00000415807.6_1_3:172115292-172115697:+|nuORF MSMS UPN47_class_I_Rep_2 3 565.2786254882812 2 565.28028 1128.54601 NaN NaN NaN NaN NaN NaN NaN 117.66 1 121.15 120.65 121.65 3.4891 0 0 0 0.39598 1 28766 28766 1.6526 0 1 17552 6644 11003 11009 21174 21174 -0.013123687838515252 KKMSWHHR 8 Unmodified _KKMSWHHR_ 0 0 0 REV__L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|318|2|anti-sense REV__L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|318|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 555.2932739257812 2 555.292902 1108.57125 0.048601 2.6988E-05 1.0359 0.00057522 1.0845 0.00060221 555.2935577575337 12.85 0.15784 16.238 16.143 16.301 3.388 26 17 2 0 0 0 0.82752 1 162 162 1.8442 0.19162 1 50804 + 17553 30064 11004 11010 21175 21175 0.02130866853576663 KKMTKLRRH 9 Unmodified _KKMTKLRRH_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN46_class_I_Rep_3 1 599.37255859375 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 94.1 1 94.1 93.6 94.6 0 0 0 0 0.4007 1 22823 22823 0.52476 0 1 + 17554 23717 11005 11011 21176 21176 0.13831946392951977 KKMTKLRRH 9 Unmodified _KKMTKLRRH_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN46_class_I_Rep_3 1 599.3727416992188 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 106.15 1 106.15 105.65 106.65 0 0 0 0 0.4007 1 25886 25886 0.52476 0 1 + 17555 23717 11005 11011 21177 21177 0.13831946392951977 KKMTKLRRH 9 Unmodified _KKMTKLRRH_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN47_class_I_Rep_1 2 599.3717651367188 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 89.434 1 93.107 92.607 93.607 3.6738 0 0 0 0.4007 1 22363 22363 0.52476 0 1 + 17556 23717 11005 11011 21178 21178 0.13831946392951977 KKMTKLRRH 9 Unmodified _KKMTKLRRH_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|37|1|sense MSMS UPN47_class_I_Rep_3 4 599.2927856445312 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 78.05 1 81.332 80.832 81.832 3.2816 0 0 0 0.4007 1 19450 19450 0.52476 0 1 + 17557 23717 11005 11011 21179 21179 0.13831946392951977 KKMWYIYP 8 Unmodified _KKMWYIYP_ 0 0 0 L1PA13_dup3758|chr7:50365486-50366271:+|4.929391999519905|0.0615041630701659|6.32|151.0|13|2|sense L1PA13_dup3758|chr7:50365486-50366271:+|4.929391999519905|0.0615041630701659|6.32|151.0|13|2|sense L1PA13_dup3758|chr7:50365486-50366271:+|4.929391999519905|0.0615041630701659|6.32|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 564.7994995117188 2 564.799163 1127.58377 NaN NaN NaN NaN NaN NaN NaN 111.9 1 115.43 114.93 115.93 3.5226 0 0 0 0.40738 1 27254 27254 0.79363 0 1 17558 13752 11006 11012 21180 21180 0.02508465473238175 KKNEFNRIKYR 11 Unmodified _KKNEFNRIKYR_ 0 0 0 REV__L1MEi_dup4999|chr20:41107177-41107847:-|1.3341491210492176|0.1802393010255936|2.89|151.0|7|1|sense REV__L1MEi_dup4999|chr20:41107177-41107847:-|1.3341491210492176|0.1802393010255936|2.89|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 499.28759765625 3 499.28792 1494.84193 NaN NaN NaN NaN NaN NaN NaN 41.753 1 45.432 44.932 45.932 3.6792 0 0 0 0.38417 1 8417 8417 0.094841 0 1 + 17559 28808 11007 11013 21181 21181 0.11430293319835982 KKNHKSSKTHK 11 Unmodified _KKNHKSSKTHK_ 0 0 0 REV__nc|ENSG00000134884|Q9NWB6-2|ARGLU1 REV__nc|ENSG00000134884|Q9NWB6-2|ARGLU1 MSMS UPN46_class_I_Rep_3 1 441.5927429199219 3 441.593232 1321.75787 NaN NaN NaN NaN NaN NaN NaN 32.127 1 32.127 31.627 32.627 0 0 0 0 0.38417 1 5458 5458 1.2148 0.4383 1 + 17560 19117 11008 11014 21182 21182 0.10985762222935591 KKNKVEGLTLL 11 Unmodified _KKNKVEGLTLL_ 0 0 0 L1MB7_dup15862|chr12:66342996-66343298:-|1.7937454003743434|0.1194237865963002|3.91|151.0|4|1|sense L1MB7_dup15862|chr12:66342996-66343298:-|1.7937454003743434|0.1194237865963002|3.91|151.0|4|1|sense L1MB7_dup15862|chr12:66342996-66343298:-|1.7937454003743434|0.1194237865963002|3.91|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 621.8948974609375 2 621.892638 1241.77072 NaN NaN NaN NaN NaN NaN NaN 97.046 1 100.53 100.03 101.03 3.4791 0 0 0 0.38417 1 23834 23834 2.4985 0.84587 1 17561 10727 11009 11015 21183 21183 0.1595078056247985 KKNKVKAKI 9 Unmodified _KKNKVKAKI_ 0 0 0 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS UPN48_class_I_Rep_3 7 528.8662719726562 2 528.866226 1055.7179 0.47975 0.00025372 -0.056905 -3.0095E-05 0.42284 0.00022363 528.8660900326861 108.24 0.49614 111.92 111.67 112.16 3.6813 150 49 4 0 0 0 0.48643 1 25596 25596 2.0598 0 1 48748000 + 17562 17939 11010 11016 21184 21184 0.19226867290308292 KKNLVKKAK 9 Unmodified _KKNLVKKAK_ 0 0 0 ENST00000481928.1_1_2:232577883-232578096:+|nuORF ENST00000481928.1_1_2:232577883-232578096:+|nuORF ENST00000481928.1_1_2:232577883-232578096:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.8663330078125 2 528.866226 1055.7179 0.43517 0.00023014 0.28823 0.00015243 0.72339 0.00038258 528.8664241261425 108.36 0.61046 111.9 111.87 112.48 3.5382 109 67 4 0 0 0 0.48643 1 26528 26528 2.0598 0 1 15852000 17563 7002 11011 11017 21185 21185 0.19226867290308292 KKNLVKKAK 9 Unmodified _KKNLVKKAK_ 0 0 0 ENST00000481928.1_1_2:232577883-232578096:+|nuORF ENST00000481928.1_1_2:232577883-232578096:+|nuORF ENST00000481928.1_1_2:232577883-232578096:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 528.8662109375 2 528.866226 1055.7179 0.47975 0.00025372 -0.056905 -3.0095E-05 0.42284 0.00022363 528.8660900326861 108.24 0.49614 111.92 111.67 112.16 3.6813 150 49 4 0 0 0 0.48643 1 25549 25549 2.0598 0 1 48748000 17564 7002 11011 11017 21186 21186 0.19226867290308292 KKNNFQLLEKY 11 Unmodified _KKNNFQLLEKY_ 0 0 0 REV__L1MB4_dup4300|chr9:77722944-77723429:+|1.6290882784892826|0.051106557850267|4.99|151.0|6|2|sense REV__L1MB4_dup4300|chr9:77722944-77723429:+|1.6290882784892826|0.051106557850267|4.99|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 475.6006164550781 3 475.601393 1423.78235 -0.22146 -0.00010533 -0.30535 -0.00014523 -0.52681 -0.00025055 475.60117991906867 43.077 0.68662 46.764 46.56 47.246 3.6875 75 43 2 0 0 0 0.6724 1 8834 8834 1.2148 0.10508 1 97934 + 17565 25973 11012 11018 21187 21187 0.08740977585807741 KKNPIVETKPM 11 Unmodified _KKNPIVETKPM_ 0 0 0 REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D MSMS UPN48_class_I_Rep_1 5 642.869873046875 2 642.870848 1283.72714 NaN NaN NaN NaN NaN NaN NaN 69.689 1 73.144 72.644 73.644 3.4548 0 0 0 0.38417 1 16184 16184 2.2828 0 1 + 17566 19251 11013 11019 21188 21188 0.09662847793651963 KKNQAESPKL 10 Unmodified _KKNQAESPKL_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|25|2|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|25|2|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|25|2|sense MSMS UPN48_class_I_Rep_1 5 571.8278198242188 2 571.830037 1141.64552 NaN NaN NaN NaN NaN NaN NaN 49.669 1 53.193 52.693 53.693 3.5246 0 0 0 0.53105 1 10062 10062 2.7352 0.43246 1 17567 8619 11014 11020 21189 21189 0.08036488426091637 KKNRERTQN 9 Unmodified _KKNRERTQN_ 0 0 0 REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|1|1|sense REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 587.3263549804688 2 587.325985 1172.63742 NaN NaN NaN NaN NaN NaN NaN 106.07 1 106.07 105.57 106.57 0 0 0 0 0.39598 1 25870 25870 1.6526 0.17072 1 + 17568 25080 11015 11021 21190 21190 0.05800354229336335 KKNSLIYV 8 Unmodified _KKNSLIYV_ 0 0 0 L1ME1_dup7645|chr4:24523400-24524303:+|2.542105909255202|0.4537754036539537|2.49|151.0|33|3|sense L1ME1_dup7645|chr4:24523400-24524303:+|2.542105909255202|0.4537754036539537|2.49|151.0|33|3|sense L1ME1_dup7645|chr4:24523400-24524303:+|2.542105909255202|0.4537754036539537|2.49|151.0|33|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7954406738281 2 482.794935 963.575317 0.104 5.0211E-05 1.5917 0.00076847 1.6957 0.00081868 482.7955200943147 34.122 0.086838 34.122 34.065 34.151 0 7 4 2 0 0 0 0.82752 1 6048 6048 2.0598 0 1 452780 17569 12436 11016 11022 21191 21191 0.09207234828284072 KKNYQLFF 8 Unmodified _KKNYQLFF_ 0 0 0 Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|37|1|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|37|1|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|37|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 544.6229248046875 2 544.300384 1086.58622 0.57621 0.00031363 -3.5827 -0.0019501 -3.0065 -0.0016365 544.2980924343904 58.375 0.22587 61.873 61.755 61.981 3.4987 15 12 2 0 0 0 0.72333 1 12699 12699 13.508 1.8676 1 60543 17570 464 11017 11023 21192 21192 0.04638637202560858 KKNYRLIPI 9 Unmodified _KKNYRLIPI_ 0 0 0 L1ME2_dup6811|chr9:70332548-70333307:+|1.6378195053797078|0.078213584857683|4.39|151.0|1|1|sense L1ME2_dup6811|chr9:70332548-70333307:+|1.6378195053797078|0.078213584857683|4.39|151.0|1|1|sense L1ME2_dup6811|chr9:70332548-70333307:+|1.6378195053797078|0.078213584857683|4.39|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 572.85009765625 2 572.863683 1143.71281 NaN NaN NaN NaN NaN NaN NaN 13.711 1 17.085 16.585 17.585 3.3734 0 0 0 0.4007 1 374 374 0.52476 0 1 17571 12515 11018 11024 21193 21193 0.14670563427716843 KKPHVPLVE 9 Unmodified _KKPHVPLVE_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|27|1|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|27|1|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|27|1|sense MSMS UPN48_class_I_Rep_2 6 523.805419921875 2 523.821484 1045.62842 NaN NaN NaN NaN NaN NaN NaN 79.252 1 82.885 82.385 83.385 3.6331 0 0 0 0.38478 1 18821 18821 4.3292 2.0265 1 17572 16068 11019 11025 21194 21194 0.1074261261094307 KKPIGHHTL 9 Unmodified _KKPIGHHTL_ 0 0 0 ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|1|intron;ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|2|intron;ENST00000471090.5_1_X:3736739-3742335:-|nuORF ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|1|intron ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|1|intron MSMS UPN48_class_I_Rep_3 7 515.811279296875 2 515.811451 1029.60835 NaN NaN NaN NaN NaN NaN NaN 63.992 1 67.5 67 68 3.5083 0 0 0 0.37692 1 14351 14351 6.2058 0 1 17573 5848 11020 11026 21195 21195 0.0947286167099719 KKPKPKFK 8 Unmodified _KKPKPKFK_ 0 0 0 REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|66|2|sense REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 500.8356018066406 2 500.836937 999.659321 NaN NaN NaN NaN NaN NaN NaN 113.49 1 117.12 116.62 117.62 3.6314 0 0 0 0.40746 1 27571 27571 0.69038 0 1 + 17574 29533 11021 11027 21196 21196 0.1594781071584066 KKPLPPTTTKK 11 Unmodified _KKPLPPTTTKK_ 0 0 0 REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF MSMS UPN46_class_I_Rep_3 1 619.89453125 2 619.89518 1237.77581 NaN NaN NaN NaN NaN NaN NaN 84.526 1 84.526 84.026 85.026 0 0 0 0 0.38417 1 20113 20113 0 0 1 + 17575 21701 11022 11028 21197 21197 0.16643084425027155 KKPNKRAK 8 Unmodified _KKPNKRAK_ 0 0 0 REV__ENSG00000180488|ENST00000370791|MIGA1 REV__ENSG00000180488|ENST00000370791|MIGA1 MSMS UPN47_class_I_Rep_1 2 485.3189697265625 2 485.319443 968.624333 NaN NaN NaN NaN NaN NaN NaN 39.912 1 43.579 43.079 44.079 3.6668 0 0 0 0.40746 1 7857 7857 0.69038 0.088878 1 + 17576 20707 11023 11029 21198 21198 0.13876567907891513 KKPNKRAK 8 Unmodified _KKPNKRAK_ 0 0 0 REV__ENSG00000180488|ENST00000370791|MIGA1 REV__ENSG00000180488|ENST00000370791|MIGA1 MSMS UPN47_class_I_Rep_3 4 485.3191833496094 2 485.319443 968.624333 NaN NaN NaN NaN NaN NaN NaN 40.195 1 43.432 42.932 43.932 3.2372 0 0 0 0.40746 1 8025 8025 0.69038 0.088878 1 + 17577 20707 11023 11029 21199 21199 0.13876567907891513 KKPPLPTIAE 10 Unmodified _KKPPLPTIAE_ 0 0 0 REV__ENSG00000106809|ENST00000375561|OGN REV__ENSG00000106809|ENST00000375561|OGN MSMS UPN48_class_I_Rep_2 6 547.3325805664062 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 66.084 1 69.571 69.071 70.071 3.4866 0 0 0 0.53105 1 15071 15071 1.6526 0.85899 1 + 17578 18342 11024 11030 21200 21200 0.11167462062553568 KKPPVRILV 9 Unmodified _KKPPVRILV_ 0 0 0 L1ME4a_dup11568|chr5:137978124-137978455:-|1.6238445145548843|0.026824514613549|5.92|151.0|16|1|anti-sense L1ME4a_dup11568|chr5:137978124-137978455:-|1.6238445145548843|0.026824514613549|5.92|151.0|16|1|anti-sense L1ME4a_dup11568|chr5:137978124-137978455:-|1.6238445145548843|0.026824514613549|5.92|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_2 6 525.3636474609375 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 68.25 1 71.758 71.258 72.258 3.5083 0 0 0 0.39326 1 15729 15729 2.3027 1.7012 1 17579 12851 11025 11031 21201 21201 0.18967768778634309 KKQHHFHV 8 Unmodified _KKQHHFHV_ 0 0 0 REV__L1MB7_dup9778|chr8:47787764-47787981:+|1.5125698025413707|0.1406469663399392|3.43|151.0|17|2|anti-sense REV__L1MB7_dup9778|chr8:47787764-47787981:+|1.5125698025413707|0.1406469663399392|3.43|151.0|17|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.8123168945312 2 530.793592 1059.57263 NaN NaN NaN NaN NaN NaN NaN 114 1 117.67 117.17 118.17 3.663 0 0 0 0.40604 1 27229 27229 2.5775 1.8871 1 + 17580 26328 11026 11032 21202 21202 0.045228242139728536 KKQIYIYRAI 10 Unmodified _KKQIYIYRAI_ 0 0 0 REV__L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|2|1|sense REV__L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 432.5972595214844 3 432.599324 1294.77614 NaN NaN NaN NaN NaN NaN NaN 100.54 1 104.01 103.51 104.51 3.4671 0 0 0 0.53105 1 24832 24832 1.9064 1.2795 1 + 17581 29400 11027 11033 21203 21203 0.14054504144928615 KKQIYIYRAI 10 Unmodified _KKQIYIYRAI_ 0 0 0 REV__L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|2|1|sense REV__L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 432.5979309082031 3 432.599324 1294.77614 NaN NaN NaN NaN NaN NaN NaN 101.38 1 105.2 104.7 105.7 3.8153 0 0 0 0.53105 1 23979 23979 1.9064 0.45126 1 + 17582 29400 11027 11033 21204 21204 0.14054504144928615 KKQKLMHL 8 Unmodified _KKQKLMHL_ 0 0 0 L1MD_dup7521|chr16:23894789-23895416:-|2.462583657814643|0.0216883510962552|6.83|151.0|15|3|sense L1MD_dup7521|chr16:23894789-23895416:-|2.462583657814643|0.0216883510962552|6.83|151.0|15|3|sense L1MD_dup7521|chr16:23894789-23895416:-|2.462583657814643|0.0216883510962552|6.83|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 513.3178100585938 2 513.318054 1024.62156 NaN NaN NaN NaN NaN NaN NaN 41.455 1 44.692 44.192 45.192 3.2372 0 0 0 0.40738 1 8410 8410 0.79363 0 1 17583 11891 11028 11034 21205 21205 0.11022976458730227 KKQLDDTYT 9 Unmodified _KKQLDDTYT_ 0 0 0 REV__CON__Q32PJ2 REV__CON__Q32PJ2 MULTI-MSMS UPN47_class_I_Rep_3 4 556.283203125 2 556.285128 1110.5557 -0.091004 -5.0624E-05 -0.19249 -0.00010708 -0.28349 -0.0001577 556.2851181676209 36.387 0.6321 39.642 39.342 39.974 3.2547 65 41 2 0 0 0 0.42249 1 6906 6906 6.7232 0 1 86842 + + 17584 17494 11029 11035 21206 21206 0.004848140268450152 KKQNISKAIL 10 Unmodified _KKQNISKAIL_ 0 0 0 REV__L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|69|2|sense REV__L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|69|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.86669921875 2 571.866423 1141.71829 -0.12581 -7.1945E-05 0.48146 0.00027533 0.35565 0.00020339 571.866644276562 12.679 0.047157 12.679 12.667 12.714 0 5 3 2 0 0 0 0.56354 1 179 179 1.3295 0.63916 1 29003 + 17585 30004 11030 11036 21207 21207 0.15310242219516113 KKQQEIRHK 9 Unmodified _KKQQEIRHK_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|6|1|sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|6|1|sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 597.8562622070312 2 597.856921 1193.69929 NaN NaN NaN NaN NaN NaN NaN 95.682 1 99.591 99.091 100.09 3.9084 0 0 0 0.39518 1 22681 22681 1.8442 0 1 17586 11925 11031 11037 21208 21208 0.11018705648461946 KKQQMLMR 8 Unmodified _KKQQMLMR_ 0 0 0 L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|47|3|sense;L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|112|2|sense;L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|28|1|sense;L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|61|1|sense L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|47|3|sense L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|47|3|sense MSMS UPN47_class_I_Rep_3 4 531.7988891601562 2 531.799171 1061.58379 NaN NaN NaN NaN NaN NaN NaN 93.748 1 97.153 96.653 97.653 3.4052 0 0 0 0.40746 1 23357 23357 0.69038 0 1 17587 13569 11032 11038 21209 21209 0.05546142201615112 KKQSPRAK 8 Unmodified _KKQSPRAK_ 0 0 0 REV__AluJr_dup77637|chr19:16156078-16156361:+|4.580289487571816|0.3071461184889826|3.9|151.0|11|3|sense REV__AluJr_dup77637|chr19:16156078-16156361:+|4.580289487571816|0.3071461184889826|3.9|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 23.541 1 27.26 26.76 27.76 3.7192 0 0 0 0.40659 1 2927 2927 1.8442 1.0506 1 + 17588 17062 11033 11039 21210 21210 0.10392288636899139 KKQTRLHF 8 Unmodified _KKQTRLHF_ 0 0 0 REV__L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|20|2|sense REV__L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 529.315673828125 2 529.3169 1056.61925 NaN NaN NaN NaN NaN NaN NaN 73.953 1 77.434 76.934 77.934 3.4812 0 0 0 0.40581 1 17456 17456 2.8892 0.31174 1 + 17589 26600 11034 11040 21211 21211 0.09320264045254589 KKQTVIFFP 9 Unmodified _KKQTVIFFP_ 0 0 0 REV__ENST00000494799.5_1_10:90751287-90770560:+|nuORF REV__ENST00000494799.5_1_10:90751287-90770560:+|nuORF MSMS UPN48_class_I_Rep_3 7 554.3319702148438 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 79.387 1 83.029 82.529 83.529 3.6423 0 0 0 0.38784 1 18823 18823 3.5965 0 1 + 17590 21968 11035 11041 21212 21212 0.09975783270760985 KKQWALSL 8 Unmodified _KKQWALSL_ 0 0 0 Charlie4z_dup4409|chr13:50123025-50123138:+|1.1585898522407676|0.0566257914275214|4.35|151.0|8|1|anti-sense Charlie4z_dup4409|chr13:50123025-50123138:+|1.1585898522407676|0.0566257914275214|4.35|151.0|8|1|anti-sense Charlie4z_dup4409|chr13:50123025-50123138:+|1.1585898522407676|0.0566257914275214|4.35|151.0|8|1|anti-sense MSMS UPN48_class_I_Rep_1 5 487.29351806640625 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 94.196 1 97.817 97.317 98.317 3.6208 0 0 0 0.40625 1 22662 22662 2.3027 0.24298 1 17591 528 11036 11042 21213 21213 0.08826654548136048 KKQYLHLPP 9 Unmodified _KKQYLHLPP_ 0 0 0 REV__AluJo_dup76734|chr22:19958600-19958908:+|1.1492057069801669|0.0777876528317462|3.88|151.0|8|3|sense REV__AluJo_dup76734|chr22:19958600-19958908:+|1.1492057069801669|0.0777876528317462|3.88|151.0|8|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.334759 1122.65496 0.14635 8.2297E-05 -0.020264 -1.1395E-05 0.12609 7.0902E-05 562.3347387765458 28.292 0.11682 28.292 28.256 28.373 0 9 5 2 0 0 0 0.48643 1 4328 4328 2.0598 0.21551 1 121390 + 17592 17023 11037 11043 21214 21214 0.09854301502286944 KKRAVVKEQK 10 Unmodified _KKRAVVKEQK_ 0 0 0 REV__L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|2|1|sense REV__L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 404.7925109863281 3 405.262823 1212.76664 NaN NaN NaN NaN NaN NaN NaN 113.9 1 117.4 116.9 117.9 3.4963 0 0 0 0.53105 1 27953 27953 0.56317 0.1965 1 + 17593 27986 11038 11044 21215 21215 0.16876735859386827 KKREEVLM 8 Unmodified _KKREEVLM_ 0 0 0 REV__ENST00000552545.1_1_12:53124746-53124836:+|nuORF REV__ENST00000552545.1_1_12:53124746-53124836:+|nuORF MSMS UPN47_class_I_Rep_2 3 516.757568359375 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 71.485 1 74.775 74.275 75.275 3.2899 0 0 0 0.40738 1 17473 17473 0.79363 0 1 + 17594 22969 11039 11045 21216 21216 0.06522375979534445 KKRGSTGAKSD 11 Unmodified _KKRGSTGAKSD_ 0 0 0 REV__L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|38|3|sense REV__L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 567.8167724609375 2 567.814919 1133.61528 NaN NaN NaN NaN NaN NaN NaN 26.536 1 26.536 26.036 27.036 0 0 0 0 0.38417 1 3809 3809 0.96228 0.2719 1 + 17595 28566 11040 11046 21217 21217 0.05382129760914722 KKRHGYYIL 9 Unmodified _KKRHGYYIL_ 0 0 0 L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|27|2|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|27|2|sense L1PA14_dup233|chr1:247162627-247164968:+|7.640865369516461|0.3887194544737339|4.3|151.0|27|2|sense MSMS UPN47_class_I_Rep_1 2 589.3436279296875 2 589.345658 1176.67676 NaN NaN NaN NaN NaN NaN NaN 88.018 1 91.674 91.174 92.174 3.6563 0 0 0 0.40038 1 22009 22009 0.6015 0.076735 1 17596 13830 11041 11047 21218 21218 0.09549106250847217 KKRHYKSYFLY 11 Unmodified _KKRHYKSYFLY_ 0 0 0 REV__L1MDa_dup6789|chr22:40443301-40444180:+|1.0645929543562112|0.011351938097791|6.55|151.0|18|3|sense REV__L1MDa_dup6789|chr22:40443301-40444180:+|1.0645929543562112|0.011351938097791|6.55|151.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 511.619384765625 3 511.617266 1531.82997 NaN NaN NaN NaN NaN NaN NaN 35.624 1 39.291 38.791 39.791 3.6667 0 0 0 0.38417 1 5800 5800 1.4551 0.94916 1 + 17597 27548 11042 11048 21219 21219 0.08532676576669473 KKRKFIWG 8 Unmodified _KKRKFIWG_ 0 0 0 HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|234|1|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|234|1|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|234|1|anti-sense MSMS UPN48_class_I_Rep_1 5 531.8172607421875 2 531.832186 1061.64982 NaN NaN NaN NaN NaN NaN NaN 79.626 1 83.175 82.675 83.675 3.5487 0 0 0 0.40738 1 19016 19016 0.79363 0.10326 1 17598 8048 11043 11049 21220 21220 0.12146042430322268 KKRKKGLRWLH 11 Unmodified _KKRKKGLRWLH_ 0 0 0 REV__ENST00000498128.1_1_1:46108161-46120330:-|nuORF REV__ENST00000498128.1_1_1:46108161-46120330:-|nuORF MSMS UPN48_class_I_Rep_1 5 483.9809875488281 3 483.980762 1448.92046 NaN NaN NaN NaN NaN NaN NaN 91.821 1 95.447 94.947 95.947 3.626 0 0 0 0.38417 1 22066 22066 0 0 1 + 17599 22675 11044 11050 21221 21221 0.21395190415614707 KKRKKLTLT 9 Unmodified _KKRKKLTLT_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MSMS UPN48_class_I_Rep_3 7 558.3857421875 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 37.982 1 41.642 41.142 42.142 3.6595 0 0 0 0.4007 1 6469 6469 0.52476 0 1 17600 1323 11045 11051 21222 21222 0.20222538836083004 KKRKKQIRKKL 11 Unmodified _KKRKKQIRKKL_ 0 0 0 REV__L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|22|3|sense REV__L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 485.341796875 3 485.3437 1453.00927 NaN NaN NaN NaN NaN NaN NaN 101.52 1 105.31 104.81 105.81 3.7942 0 0 0 0.38417 1 25031 25031 0.45452 0.35968 1 + 17601 24649 11046 11052 21223 21223 0.3008860565523719 KKRKLKIKKWP 11 Unmodified _KKRKLKIKKWP_ 0 0 0 L1ME1_dup26777|chr16:57557210-57558136:-|1.900963088284058|0.0134717831078906|7.14|151.0|31|3|sense L1ME1_dup26777|chr16:57557210-57558136:-|1.900963088284058|0.0134717831078906|7.14|151.0|31|3|sense L1ME1_dup26777|chr16:57557210-57558136:-|1.900963088284058|0.0134717831078906|7.14|151.0|31|3|sense MSMS UPN46_class_I_Rep_3 1 484.949951171875 3 485.001163 1451.98166 NaN NaN NaN NaN NaN NaN NaN 64.527 1 64.527 64.027 65.027 0 0 0 0 0.38417 1 14528 14528 0.094841 0.094841 1 17602 12348 11047 11053 21224 21224 0.2737470239499089 KKRKNSTIQH 10 Unmodified _KKRKNSTIQH_ 0 0 0 REV__L1MB7_dup17913|chr15:30441632-30442474:-|2.354961614798525|0.031496119479737|6.22|151.0|21|3|sense REV__L1MB7_dup17913|chr15:30441632-30442474:-|2.354961614798525|0.031496119479737|6.22|151.0|21|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 620.8705444335938 2 620.367653 1238.72075 0.54808 0.00034001 0.84517 0.00052431 1.3932 0.00086432 620.870330142746 107.88 0.33238 111.51 111.47 111.8 3.6355 27 22 2 0 0 0 0.56078 1 26467 26467 3.2813 0 1 2265000 + 17603 26175 11048 11054 21225 21225 0.11094090677170243 KKRKNWLR 8 Unmodified _KKRKNWLR_ 0 0 0 nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2 nc|ENSG00000166833|Q8IVL1-6|NAV2 nc|ENSG00000166833|Q8IVL1-6|NAV2 MSMS UPN46_class_I_Rep_3 1 564.8605346679688 2 564.859267 1127.70398 NaN NaN NaN NaN NaN NaN NaN 71.468 1 71.468 70.968 71.968 0 0 0 0 0.40746 1 16465 16465 0.69038 0 1 17604 4265 11049 11055 21226 21226 0.14523634581883016 KKRKRCIW 8 Unmodified _KKRKRCIW_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;ENST00000490880.5_1_2:231065532-231076254:-|nuORF;nc|ENSG00000135899|Q9HB58-4|SP110;nc|ENSG00000135899|Q9HB58-2|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MSMS UPN46_class_I_Rep_3 1 559.3410034179688 2 559.342395 1116.67024 NaN NaN NaN NaN NaN NaN NaN 84.439 1 84.439 83.939 84.939 0 0 0 0 0.40746 1 20089 20089 0.69038 0.088878 1 17605 2936 11050 11056 21227 21227 0.11656889818459604 KKRKRKKPVL 10 Unmodified _KKRKRKKPVL_ 0 0 0 ENST00000394434.6_1_5:145547719-145547791:-|nuORF ENST00000394434.6_1_5:145547719-145547791:-|nuORF ENST00000394434.6_1_5:145547719-145547791:-|nuORF MSMS UPN48_class_I_Rep_2 6 640.9527587890625 2 640.953698 1279.89284 NaN NaN NaN NaN NaN NaN NaN 28.239 1 31.87 31.37 32.37 3.6311 0 0 0 0.53105 1 3862 3862 0.40072 0.40072 1 17606 6543 11051 11057 21228 21228 0.2640928715534301 KKRKTKTK 8 Unmodified _KKRKTKTK_ 0 0 0 REV__AluJo_dup69924|chr19:7432465-7432639:-|1.225795984106035|0.0189030953686066|6.02|151.0|6|2|sense REV__AluJo_dup69924|chr19:7432465-7432639:-|1.225795984106035|0.0189030953686066|6.02|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 509.8041076660156 2 509.3482 1016.68185 NaN NaN NaN NaN NaN NaN NaN 83.663 1 83.663 83.163 84.163 0 0 0 0 0.40798 1 19882 19882 0 0 1 + 17607 17018 11052 11058 21229 21229 0.17417410113478127 KKRLKRRDN 9 Unmodified _KKRLKRRDN_ 0 0 0 L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|17|1|sense L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|17|1|sense L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 405.25872802734375 3 405.258184 1212.75272 NaN NaN NaN NaN NaN NaN NaN 97.315 1 97.315 96.815 97.815 0 0 0 0 0.40177 1 23673 23673 0.26902 0 1 17608 11454 11053 11059 21230 21230 0.1548550315101238 KKRLKRRDN 9 Unmodified _KKRLKRRDN_ 0 0 0 L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|17|1|sense L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|17|1|sense L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 405.25860595703125 3 405.258184 1212.75272 NaN NaN NaN NaN NaN NaN NaN 97.515 1 97.515 97.015 98.015 0 0 0 0 0.40177 1 23729 23729 0.26902 0 1 17609 11454 11053 11059 21231 21231 0.1548550315101238 KKRLTKDK 8 Unmodified _KKRLTKDK_ 0 0 0 REV__ENST00000497995.1_1_X:53244961-53245340:-|nuORF REV__ENST00000497995.1_1_X:53244961-53245340:-|nuORF MSMS UPN48_class_I_Rep_1 5 508.8321838378906 2 508.832383 1015.65021 NaN NaN NaN NaN NaN NaN NaN 107 1 110.63 110.13 111.13 3.6299 0 0 0 0.4044 1 25778 25778 4.756 0 1 + 17610 18854 11054 11060 21232 21232 0.1430141735951338 KKRLYPVI 8 Unmodified _KKRLYPVI_ 0 0 0 ENST00000367577.6_2_1:181059582-181059666:+|nuORF ENST00000367577.6_2_1:181059582-181059666:+|nuORF ENST00000367577.6_2_1:181059582-181059666:+|nuORF MSMS UPN48_class_I_Rep_1 5 508.8324279785156 2 508.834394 1015.65424 NaN NaN NaN NaN NaN NaN NaN 107.15 1 110.78 110.28 111.28 3.6299 0 0 0 0.40604 1 25812 25812 2.5775 0.51773 1 17611 6353 11055 11061 21233 21233 0.1470350685323183 KKRQETGEQ 9 Unmodified _KKRQETGEQ_ 0 0 0 MER39_dup482|chr2:177297196-177297812:+|1.3232641454582188|0.0976547577240723|3.76|151.0|26|1|anti-sense MER39_dup482|chr2:177297196-177297812:+|1.3232641454582188|0.0976547577240723|3.76|151.0|26|1|anti-sense MER39_dup482|chr2:177297196-177297812:+|1.3232641454582188|0.0976547577240723|3.76|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.2935180664062 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 98.307 1 101.8 101.3 102.3 3.4897 0 0 0 0.38639 1 24109 24109 3.9444 0 1 17612 15931 11056 11062 21234 21234 0.025901543525378656 KKRQIYRFKF 10 Unmodified _KKRQIYRFKF_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|46|3|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|46|3|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|46|3|sense MSMS UPN48_class_I_Rep_2 6 471.95147705078125 3 471.954101 1412.84047 NaN NaN NaN NaN NaN NaN NaN 98.96 1 102.73 102.23 103.23 3.7707 0 0 0 0.53105 1 23507 23507 0.69767 0.19171 1 17613 12986 11057 11063 21235 21235 0.15056704021708356 KKRRKKKAA 9 Unmodified _KKRRKKKAA_ 0 0 0 REV__ENSG00000111142|ENST00000323666|METAP2 REV__ENSG00000111142|ENST00000323666|METAP2 MSMS UPN46_class_I_Rep_3 1 557.07763671875 2 557.388191 1112.76183 NaN NaN NaN NaN NaN NaN NaN 65.81 1 65.81 65.31 66.31 0 0 0 0 0.4029 1 14895 14895 0 0 1 + 17614 18447 11058 11064 21236 21236 0.2099589650733833 KKRRMRFP 8 Unmodified _KKRRMRFP_ 0 0 0 REV__ENSG00000064201.16,TSPAN32,chr11,+,I4.1,2304205,2306944|34|14.18|1|intron REV__ENSG00000064201.16,TSPAN32,chr11,+,I4.1,2304205,2306944|34|14.18|1|intron MSMS UPN47_class_I_Rep_3 4 559.83935546875 2 559.84002 1117.66549 NaN NaN NaN NaN NaN NaN NaN 26.057 1 29.405 28.905 29.905 3.3478 0 0 0 0.40746 1 3756 3756 0.69038 0 1 + 17615 17737 11059 11065 21237 21237 0.11136005675712113 KKRRRKKKKVS 11 Unmodified _KKRRRKKKKVS_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MSMS UPN46_class_I_Rep_3 1 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 107.25 1 107.25 106.75 107.75 0 0 0 0 0.38417 1 26159 26159 0.094841 0.094841 1 + 17616 18167 11060 11066 21238 21238 0.28126550852653054 KKRRRKKKKVS 11 Unmodified _KKRRRKKKKVS_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MSMS UPN47_class_I_Rep_1 2 481.33660888671875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 102.76 1 106.54 106.04 107.04 3.7788 0 0 0 0.38417 1 25283 25283 0.094841 0.094841 1 + 17617 18167 11060 11066 21239 21239 0.28126550852653054 KKRRRKKKKVS 11 Unmodified _KKRRRKKKKVS_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MSMS UPN48_class_I_Rep_1 5 481.3352966308594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 76.293 1 79.803 79.303 80.303 3.5102 0 0 0 0.38417 1 18119 18119 0.094841 0.094841 1 + 17618 18167 11060 11066 21240 21240 0.28126550852653054 KKRRRKKKKVS 11 Unmodified _KKRRRKKKKVS_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MSMS UPN48_class_I_Rep_3 7 481.5676574707031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 55.442 1 58.997 58.497 59.497 3.5554 0 0 0 0.38417 1 11753 11753 0.094841 0.094841 1 + 17619 18167 11060 11066 21241 21241 0.28126550852653054 KKRRRKKKKVS 11 Unmodified _KKRRRKKKKVS_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MSMS UPN48_class_I_Rep_3 7 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 83.532 1 87.26 86.76 87.76 3.7281 0 0 0 0.38417 1 19806 19806 0.094841 0.094841 1 + 17620 18167 11060 11066 21242 21242 0.28126550852653054 KKRRSAFH 8 Unmodified _KKRRSAFH_ 0 0 0 REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|3|1|sense REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 515.3065795898438 2 515.306867 1028.59918 NaN NaN NaN NaN NaN NaN NaN 70.607 1 74.142 73.642 74.642 3.5359 0 0 0 0.40738 1 16432 16432 0.79363 0.10326 1 + 17621 31773 11061 11067 21243 21243 0.08602513105302023 KKRSFLFG 8 Unmodified _KKRSFLFG_ 0 0 0 REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|1|1|sense REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 491.7960205078125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.642 1 72.151 71.651 72.651 3.5094 0 0 0 0.40625 1 15753 15753 2.3027 0 1 + 17622 27314 11062 11068 21244 21244 0.08446074267999393 KKRSLEYKR 9 Unmodified _KKRSLEYKR_ 0 0 0 nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1 nc|ENSG00000064042|Q9UPQ0-3|LIMCH1 nc|ENSG00000064042|Q9UPQ0-3|LIMCH1 MSMS UPN47_class_I_Rep_1 2 604.3663330078125 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 97.65 1 101.44 100.94 101.94 3.7861 0 0 0 0.40098 1 24194 24194 0.45834 0 1 17623 986 11063 11069 21245 21245 0.12459876308253115 KKRTAIKNV 9 Unmodified _KKRTAIKNV_ 0 0 0 REV__L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|63|3|sense REV__L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|63|3|sense MSMS UPN48_class_I_Rep_3 7 529.3443603515625 2 529.345658 1056.67676 NaN NaN NaN NaN NaN NaN NaN 77.38 1 80.981 80.481 81.481 3.6016 0 0 0 0.39518 1 18275 18275 1.8442 0 1 + 17624 28751 11064 11070 21246 21246 0.15069106250825826 KKRTNRGLKP 10 Unmodified _KKRTNRGLKP_ 0 0 0 REV__L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|103|3|sense REV__L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|103|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.88134765625 2 599.380563 1196.74657 0.51945 0.00031135 -0.77191 -0.00046267 -0.25247 -0.00015132 599.8814122069671 95.42 0.3943 99.185 99.005 99.399 3.7648 67 51 2 0 0 0 0.56354 1 23718 23718 1.3295 0 1 256030 + 17625 30056 11065 11071 21247 21247 0.15606984919440947 KKRYPRMH 8 Unmodified _KKRYPRMH_ 0 0 0 REV__ENSG00000133028|ENST00000255390|SCO1 REV__ENSG00000133028|ENST00000255390|SCO1 MULTI-SECPEP UPN48_class_I_Rep_3 7 557.8140258789062 2 558.316377 1114.6182 0.42398 0.00023671 -1.7061 -0.00095255 -1.2821 -0.00071584 558.3150314144713 89.964 0.030968 93.811 93.792 93.823 3.847 5 3 2 0 0 0 0.72333 1 21361 21361 0.69038 0.088878 1 34041 + 17626 19044 11066 11072 21248 21248 0.06547726404733112 KKRYRKRKNK 10 Unmodified _KKRYRKRKNK_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MSMS UPN48_class_I_Rep_2 6 468.9709167480469 3 468.972266 1403.89497 NaN NaN NaN NaN NaN NaN NaN 48.64 1 52.357 51.857 52.857 3.7175 0 0 0 0.53105 1 9740 9740 0.15932 0.064481 1 17627 942 11067 11073 21249 21249 0.20917715893165223 KKSASLPSVY 10 Unmodified _KKSASLPSVY_ 0 0 0 REV__Charlie4z_dup776|chr2:144467399-144467583:-|1.2005492927749657|0.0044766750874371|8.07|151.0|1|1|sense REV__Charlie4z_dup776|chr2:144467399-144467583:-|1.2005492927749657|0.0044766750874371|8.07|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 540.3070068359375 2 540.308406 1078.60226 NaN NaN NaN NaN NaN NaN NaN 50.043 1 50.043 49.543 50.543 0 0 0 0 0.53105 1 10554 10554 1.6526 0.17072 1 + 17628 17386 11068 11074 21250 21250 0.0661029864882039 KKSEAKTAR 9 Unmodified _KKSEAKTAR_ 0 0 0 L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.80377197265625 2 509.803823 1017.59309 0.30583 0.00015591 -0.090404 -4.6088E-05 0.21542 0.00010982 509.80363218503396 81.435 0.26012 81.435 81.367 81.627 0 47 24 3 0 0 0 0.47493 1 19235 19235 3.2813 0 1 389060 17629 11816 11069 11075 21251 21251 0.08499950083125896 KKSEAKTAR 9 Unmodified _KKSEAKTAR_ 0 0 0 L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 509.803823 1017.59309 0.30583 0.00015591 -0.090404 -4.6088E-05 0.21542 0.00010982 509.80363218503396 81.435 0.26012 81.435 81.367 81.627 0 0.0022719 0.00023245 NaN 3.2813 47 24 3 NaN NaN NaN NaN 0 NaN NaN 0 389060 17630 11816 11069 11075 0.08499950083125896 KKSEAKTAR 9 Unmodified _KKSEAKTAR_ 0 0 0 L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 509.803823 1017.59309 0.25747 0.00013126 -0.42183 -0.00021505 -0.16437 -8.3794E-05 509.8034494728429 78.125 0.84352 81.554 81.492 82.335 3.4289 0.12137 -0.00010548 NaN 3.2813 127 82 2 NaN NaN NaN NaN 0 NaN NaN 0 185010 17631 11816 11069 11075 0.08499950083125896 KKSEAKTAR 9 Unmodified _KKSEAKTAR_ 0 0 0 L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.803823 1017.59309 0.28483 0.00014521 -0.87338 -0.00044525 -0.58855 -0.00030005 509.80309512186136 78.114 0.40388 81.396 81.205 81.609 3.2816 -0.037222 -0.00056588 NaN 3.2813 75 43 3 NaN NaN NaN NaN 0 NaN NaN 0 185040 17632 11816 11069 11075 0.08499950083125896 KKSEAKTAR 9 Unmodified _KKSEAKTAR_ 0 0 0 L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|1|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 509.803823 1017.59309 0.31219 0.00015915 -0.24336 -0.00012406 0.068829 3.5089E-05 509.8035883226212 77.758 0.47235 81.38 81.148 81.62 3.6222 -0.052795 7.6496E-05 NaN 3.2813 71 46 2 NaN NaN NaN NaN 0 NaN NaN 0 192260 17633 11816 11069 11075 0.08499950083125896 KKSEQNRFLLR 11 Unmodified _KKSEQNRFLLR_ 0 0 0 REV__L1MCa_dup239|chr1:111659607-111660446:-|4.264468595663081|0.0203678324990919|7.71|151.0|4|1|sense REV__L1MCa_dup239|chr1:111659607-111660446:-|4.264468595663081|0.0203678324990919|7.71|151.0|4|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.28228759765625 3 473.612404 1417.81538 0.053358 2.5271E-05 -0.27508 -0.00013028 -0.22172 -0.00010501 473.61231940824206 32.973 0.09256 32.973 32.901 32.993 0 7 5 2 0 0 0 22.551 1 5703 5703 1.3296 0.11481 1 28426 + 17634 27192 11070 11076 21252 21252 0.12318604428492108 KKSFIHST 8 Unmodified _KKSFIHST_ 0 0 0 REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF MSMS UPN48_class_I_Rep_1 5 473.7897033691406 2 474.269084 946.523616 NaN NaN NaN NaN NaN NaN NaN 107.65 1 111.28 110.78 111.78 3.6313 0 0 0 0.40404 1 25957 25957 5.2307 0 1 + 17635 22767 11071 11077 21253 21253 0.048214911343848144 KKSHTLRNSG 10 Unmodified _KKSHTLRNSG_ 0 0 0 MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|28|2|anti-sense MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|28|2|anti-sense MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|28|2|anti-sense MSMS UPN48_class_I_Rep_3 7 564.3186645507812 2 564.317628 1126.6207 NaN NaN NaN NaN NaN NaN NaN 56.545 1 60.088 59.588 60.588 3.5427 0 0 0 0.53105 1 12088 12088 1.1933 0.39971 1 17636 16227 11072 11078 21254 21254 0.06245853343375529 KKSIFYEEE 9 Unmodified _KKSIFYEEE_ 0 0 0 nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA MULTI-MSMS UPN46_class_I_Rep_3 1 587.2988891601562 2 586.795329 1171.5761 0.5349 0.00031388 0.93747 0.00055011 1.4724 0.00086398 586.7956242093812 97.407 0.17068 97.407 97.375 97.546 0 29 17 2 0 0 0 0.50088 1 23701 23701 0.52476 0 1 144220 17637 3324 11073 11079 21255 21255 -0.0028201531333706953 KKSIFYEEE 9 Unmodified _KKSIFYEEE_ 0 0 0 nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA MULTI-MATCH UPN48_class_I_Rep_3 7 2 586.795329 1171.5761 0.50886 0.0002986 1.0894 0.00063927 1.5983 0.00093786 586.7957962901545 93.368 0.158 97.259 97.13 97.288 3.8914 -0.074123 9.0057E-05 NaN 0.52476 22 19 2 NaN NaN NaN NaN 0 NaN NaN 0 98637 17638 3324 11073 11079 -0.0028201531333706953 KKSIKQRTAR 10 Unmodified _KKSIKQRTAR_ 0 0 0 REV__L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|6|1|sense REV__L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 608.4053344726562 2 608.385845 1214.75714 NaN NaN NaN NaN NaN NaN NaN 108.22 1 111.86 111.36 112.36 3.6355 0 0 0 0.53105 1 26567 26567 2.9952 0 1 + 17639 24607 11074 11080 21256 21256 0.15834967573869108 KKSIKQRTAR 10 Unmodified _KKSIKQRTAR_ 0 0 0 REV__L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|6|1|sense REV__L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 608.4058227539062 2 608.385845 1214.75714 NaN NaN NaN NaN NaN NaN NaN 107.86 1 111.4 110.9 111.9 3.5345 0 0 0 0.53105 1 26115 26115 5.7319 0 1 + 17640 24607 11074 11080 21257 21257 0.15834967573869108 KKSKHVGIVEF 11 Unmodified _KKSKHVGIVEF_ 0 0 0 nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ABCA5|p.K1466Qfs*15|1|0.07|ENSG00000154265|chr17:69253592-69253593|-/G|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5 nc|ENSG00000154265|Q8WWZ7-2|ABCA5 nc|ENSG00000154265|Q8WWZ7-2|ABCA5 MSMS UPN47_class_I_Rep_1 2 636.3789672851562 2 636.377155 1270.73976 NaN NaN NaN NaN NaN NaN NaN 110.68 1 114.26 113.76 114.76 3.5835 0 0 0 0.38417 1 27287 27287 1.1933 0.66858 1 17641 0 11075 11081 21258 21258 0.11521627248225741 KKSKKKKKI 9 Unmodified _KKSKKKKKI_ 0 0 0 REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF MSMS UPN48_class_I_Rep_3 7 558.4050903320312 2 558.402976 1114.7914 NaN NaN NaN NaN NaN NaN NaN 73.656 1 77.206 76.706 77.706 3.5505 0 0 0 0.4029 1 17244 17244 0 0 1 + 17642 18102 11076 11082 21259 21259 0.23859415732795242 KKSKKKQLI 9 Unmodified _KKSKKKQLI_ 0 0 0 L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|16|1|sense L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|16|1|sense L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.87939453125 2 550.879333 1099.74411 0.62268 0.00034302 0.048908 2.6943E-05 0.67159 0.00036997 550.879195914271 108.23 0.44068 111.76 111.47 111.91 3.5333 101 47 4 0 0 0 0.48846 1 26214 26214 1.8442 0 1 15949000 17643 9854 11077 11083 21260 21260 0.19823136461809554 KKSKLVRLRRK 11 Unmodified _KKSKLVRLRRK_ 0 0 0 L1PA16_dup11381|chr13:72944948-72945643:-|1.314296541976958|0.0163805522954414|6.33|151.0|1|1|sense L1PA16_dup11381|chr13:72944948-72945643:-|1.314296541976958|0.0163805522954414|6.33|151.0|1|1|sense L1PA16_dup11381|chr13:72944948-72945643:-|1.314296541976958|0.0163805522954414|6.33|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 471.3282470703125 3 471.32805 1410.96232 NaN NaN NaN NaN NaN NaN NaN 16.892 1 20.415 19.915 20.915 3.5224 0 0 0 0.38417 1 1167 1167 0.094841 0 1 17644 14027 11078 11084 21261 21261 0.27327746104106154 KKSLSARNA 9 Unmodified _KKSLSARNA_ 0 0 0 nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B nc|ENSG00000105784|Q96NL0-4|RUNDC3B nc|ENSG00000105784|Q96NL0-4|RUNDC3B MULTI-MSMS UPN46_class_I_Rep_3 1 487.7910461425781 2 487.790715 973.566878 0.26458 0.00012906 -0.043388 -2.1164E-05 0.22119 0.00010789 487.7906325045779 77.856 0.38815 77.856 77.755 78.143 0 79 42 2 0 0 0 0.49026 1 18216 18216 1.6526 0.96225 1 275440 17645 1759 11079 11085 21262 21262 0.0790368091164737 KKSLSARNA 9 Unmodified _KKSLSARNA_ 0 0 0 nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B nc|ENSG00000105784|Q96NL0-4|RUNDC3B nc|ENSG00000105784|Q96NL0-4|RUNDC3B MULTI-MSMS UPN46_class_I_Rep_3 1 487.7906188964844 2 487.790715 973.566878 0.26628 0.00012989 0.067058 3.271E-05 0.33334 0.0001626 487.7906714115299 78.47 0.25169 78.47 78.415 78.667 0 46 24 2 0 0 0 0.49026 1 18386 18386 1.6526 1.6526 1 327110 17646 1759 11079 11085 21263 21263 0.0790368091164737 KKSRLTNIV 9 Unmodified _KKSRLTNIV_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MSMS UPN46_class_I_Rep_3 1 530.2872924804688 2 529.837665 1057.66078 NaN NaN NaN NaN NaN NaN NaN 13.655 1 13.655 13.155 14.155 0 0 0 0 0.4007 1 438 438 0.52476 0 1 + 17647 19105 11080 11086 21264 21264 0.13425400013920807 KKSRPLTGL 9 Unmodified _KKSRPLTGL_ 0 0 0 nc|ENSG00000071246|Q7L8A9-2|VASH1;ENSG00000071246|ENST00000167106|VASH1 nc|ENSG00000071246|Q7L8A9-2|VASH1 nc|ENSG00000071246|Q7L8A9-2|VASH1 MSMS UPN48_class_I_Rep_3 7 500.265380859375 2 500.319109 998.623664 NaN NaN NaN NaN NaN NaN NaN 26.625 1 30.391 29.891 30.891 3.7663 0 0 0 0.4007 1 3397 3397 0.52476 0 1 17648 1086 11081 11087 21265 21265 0.12429728468180201 KKSTYIILVL 10 Unmodified _KKSTYIILVL_ 0 0 0 ENST00000186436.9_1_2:98475819-98543905:-|nuORF ENST00000186436.9_1_2:98475819-98543905:-|nuORF ENST00000186436.9_1_2:98475819-98543905:-|nuORF MSMS UPN46_class_I_Rep_3 1 589.0541381835938 2 589.381374 1176.7482 NaN NaN NaN NaN NaN NaN NaN 85.081 1 85.081 84.581 85.581 0 0 0 0 0.53105 1 20278 20278 0.45834 0.057624 1 17649 5855 11082 11088 21266 21266 0.1668918116486111 KKSVLPIAKLT 11 Unmodified _KKSVLPIAKLT_ 0 0 0 REV__HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|28|2|sense REV__HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 599.401611328125 2 599.400099 1196.78564 NaN NaN NaN NaN NaN NaN NaN 73.784 1 77.266 76.766 77.766 3.4812 0 0 0 0.38417 1 17407 17407 0.26902 0 1 + 17650 23844 11083 11089 21267 21267 0.19512272430461053 KKSVQRSSV 9 Unmodified _KKSVQRSSV_ 0 0 0 REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.80426025390625 2 509.803823 1017.59309 0.29802 0.00015193 -0.13485 -6.8746E-05 0.16317 8.3187E-05 509.80357410749696 78.816 0.36147 78.816 78.749 79.111 0 46 35 2 0 0 0 0.49187 1 18467 18467 1.4819 0.79152 1 102350 + 17651 31116 11084 11090 21268 21268 0.08499950083148633 KKSVQRSSV 9 Unmodified _KKSVQRSSV_ 0 0 0 REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.80352783203125 2 509.803823 1017.59309 0.30512 0.00015555 0.060982 3.1089E-05 0.36611 0.00018664 509.8037220548258 81.336 0.23771 81.336 81.129 81.367 0 45 24 2 0 0 0 0.47493 1 19200 19200 3.2813 1.4371 1 498540 + 17652 31116 11084 11090 21269 21269 0.08499950083148633 KKSVQRSSV 9 Unmodified _KKSVQRSSV_ 0 0 0 REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 509.803823 1017.59309 0.25622 0.00013062 -0.098641 -5.0288E-05 0.15758 8.0336E-05 509.8036790257037 77.677 0.31535 81.199 81.029 81.344 3.5221 -0.019492 0.00012798 NaN 3.2813 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 158570 + 17653 31116 11084 11090 0.08499950083148633 KKSVQRSSV 9 Unmodified _KKSVQRSSV_ 0 0 0 REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 509.803823 1017.59309 0.26099 0.00013306 0.022338 1.1388E-05 0.28333 0.00014444 509.8036380762655 75.39 0.26101 78.889 78.821 79.082 3.4996 0.0085164 0.0001202 NaN 1.4819 36 24 2 NaN NaN NaN NaN 0 NaN NaN 0 78804 + 17654 31116 11084 11090 0.08499950083148633 KKSVQRSSV 9 Unmodified _KKSVQRSSV_ 0 0 0 REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|14|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 509.803823 1017.59309 0.31223 0.00015917 -0.26628 -0.00013575 0.045946 2.3423E-05 509.8035848520723 77.478 0.26858 81.09 80.982 81.251 3.6116 -0.12831 -4.2949E-05 NaN 3.2813 45 24 3 NaN NaN NaN NaN 0 NaN NaN 0 201170 + 17655 31116 11084 11090 0.08499950083148633 KKSVVVKKKK 10 Unmodified _KKSVVVKKKK_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MSMS UPN47_class_I_Rep_3 4 586.416015625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 67.65 1 70.842 70.342 71.342 3.1914 0 0 0 0.53105 1 16392 16392 0.40072 0.40072 1 17656 930 11085 11091 21270 21270 0.23903684904257716 KKSWFCFL 8 Unmodified _KKSWFCFL_ 0 0 0 REV__ENSG00000148942|ENST00000396005|SLC5A12 REV__ENSG00000148942|ENST00000396005|SLC5A12 MSMS UPN47_class_I_Rep_1 2 529.8045043945312 2 529.778231 1057.54191 NaN NaN NaN NaN NaN NaN NaN 23.544 1 27.268 26.768 27.768 3.7245 0 0 0 0.40604 1 2928 2928 2.5775 1.7838 1 + 17657 19604 11086 11092 21271 21271 0.015439097847320227 KKSWKLAEA 9 Unmodified _KKSWKLAEA_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|41|3|sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|41|3|sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|41|3|sense MSMS UPN46_class_I_Rep_3 1 530.8097534179688 2 530.811116 1059.60768 NaN NaN NaN NaN NaN NaN NaN 84.753 1 84.753 84.253 85.253 0 0 0 0 0.38784 1 20182 20182 3.5965 1.7523 1 17658 33146 11087 11093 21272 21272 0.08026022231297247 KKTEERKI 8 Unmodified _KKTEERKI_ 0 0 0 REV__nc|ENSG00000167257|Q8ND24-2|RNF214 REV__nc|ENSG00000167257|Q8ND24-2|RNF214 MSMS UPN47_class_I_Rep_2 3 516.3145751953125 2 516.314023 1030.61349 NaN NaN NaN NaN NaN NaN NaN 93.217 1 96.685 96.185 97.185 3.4687 0 0 0 0.40746 1 23012 23012 0.69038 0 1 + 17659 20213 11088 11094 21273 21273 0.0994112074295117 KKTGYRFIWHR 11 Unmodified _KKTGYRFIWHR_ 0 0 0 REV__L1MB4_dup4324|chr9:89341579-89342940:+|1.010531641885657|0.1347043058359335|2.91|151.0|35|3|sense REV__L1MB4_dup4324|chr9:89341579-89342940:+|1.010531641885657|0.1347043058359335|2.91|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 497.9510803222656 3 497.949239 1490.82589 NaN NaN NaN NaN NaN NaN NaN 19.922 1 23.533 23.033 24.033 3.6118 0 0 0 0.38417 1 1915 1915 1.2148 0.70888 1 + 17660 25974 11089 11095 21274 21274 0.10010631873569764 KKTKPRVN 8 Unmodified _KKTKPRVN_ 0 0 0 REV__L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense REV__L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense MSMS UPN47_class_I_Rep_2 3 485.8115234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.791 1 69.049 68.549 69.549 3.2588 0 0 0 0.40604 1 15765 15765 2.5775 0.27475 1 + 17661 29723 11090 11096 21275 21275 0.12232861670986495 KKTLRALLRH 10 Unmodified _KKTLRALLRH_ 0 0 0 REV__L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|103|2|sense REV__L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|103|2|sense MSMS UPN48_class_I_Rep_3 7 618.4058227539062 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 78.361 1 81.983 81.483 82.483 3.6216 0 0 0 0.53105 1 18546 18546 0.40072 0 1 + 17662 29820 11091 11097 21276 21276 0.19060148333210236 KKTPHIITPI 10 Unmodified _KKTPHIITPI_ 0 0 0 REV__L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|59|3|sense REV__L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|59|3|sense MSMS UPN47_class_I_Rep_2 3 574.7578735351562 2 574.363516 1146.71248 NaN NaN NaN NaN NaN NaN NaN 38.467 1 41.855 41.355 42.355 3.3879 0 0 0 0.53105 1 7451 7451 1.6526 0.17072 1 + 17663 25738 11092 11098 21277 21277 0.14499143707848816 KKTRKLKD 8 Unmodified _KKTRKLKD_ 0 0 0 L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|38|1|sense L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|38|1|sense L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|38|1|sense MSMS UPN48_class_I_Rep_3 7 508.8323669433594 2 508.832383 1015.65021 NaN NaN NaN NaN NaN NaN NaN 106.64 1 110.33 109.83 110.83 3.6899 0 0 0 0.40746 1 25143 25143 0.69038 0 1 17664 9773 11093 11099 21278 21278 0.1430141735950201 KKTTMNIIL 9 Unmodified _KKTTMNIIL_ 0 0 0 L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|62|3|sense L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|62|3|sense L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|62|3|sense MSMS UPN47_class_I_Rep_3 4 531.3230590820312 2 531.323002 1060.63145 NaN NaN NaN NaN NaN NaN NaN 92.37 1 95.773 95.273 96.273 3.4034 0 0 0 0.4007 1 23066 23066 0.52476 0 1 17665 11791 11094 11100 21279 21279 0.10356119673451758 KKVEKLGY 8 Unmodified _KKVEKLGY_ 0 0 0 L1MB7_dup10339|chr8:132717031-132718219:+|1.334666315426981|0.1630992096307789|3.03|151.0|2|1|sense L1MB7_dup10339|chr8:132717031-132718219:+|1.334666315426981|0.1630992096307789|3.03|151.0|2|1|sense L1MB7_dup10339|chr8:132717031-132718219:+|1.334666315426981|0.1630992096307789|3.03|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 482.795166015625 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 30.138 1 30.138 29.638 30.638 0 0 0 0 0.40581 1 4867 4867 2.8892 0 1 17666 10668 11095 11101 21280 21280 0.09207234828284072 KKVEKVVM 8 Unmodified _KKVEKVVM_ 0 0 0 REV__ENST00000477952.1_1_2:162016988-162017924:+|nuORF REV__ENST00000477952.1_1_2:162016988-162017924:+|nuORF MSMS UPN47_class_I_Rep_1 2 480.80084228515625 2 480.799163 959.583773 NaN NaN NaN NaN NaN NaN NaN 87.655 1 91.292 90.792 91.792 3.6372 0 0 0 0.40738 1 21906 21906 0.79363 0 1 + 17667 22432 11096 11102 21281 21281 0.1023646547325825 KKVGISKEK 9 Unmodified _KKVGISKEK_ 0 0 0 MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|61|1|anti-sense MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|61|1|anti-sense MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_1 2 508.8275451660156 2 508.826766 1015.63898 NaN NaN NaN NaN NaN NaN NaN 106.87 1 110.55 110.05 111.05 3.6724 0 0 0 0.39598 1 26189 26189 1.6526 0.32309 1 17668 16172 11097 11103 21282 21282 0.1317859526537859 KKVGISKEK 9 Unmodified _KKVGISKEK_ 0 0 0 MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|61|1|anti-sense MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|61|1|anti-sense MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_1 2 508.8273010253906 2 508.826766 1015.63898 NaN NaN NaN NaN NaN NaN NaN 107.11 1 110.78 110.28 111.28 3.6724 0 0 0 0.39598 1 26239 26239 1.6526 0.32309 1 17669 16172 11097 11103 21283 21283 0.1317859526537859 KKVHEVVL 8 Unmodified _KKVHEVVL_ 0 0 0 REV__ENSG00000137764.20,MAP2K5,chr15,+,I9.1,67592975,67600684|29|6.8|4|intron REV__ENSG00000137764.20,MAP2K5,chr15,+,I9.1,67592975,67600684|29|6.8|4|intron MSMS UPN48_class_I_Rep_3 7 476.30169677734375 2 476.302927 950.591301 NaN NaN NaN NaN NaN NaN NaN 74.571 1 78.121 77.621 78.621 3.5505 0 0 0 0.40746 1 17474 17474 0.69038 0 1 + 17670 19242 11098 11104 21284 21284 0.11402941065182404 KKVHPKLPLR 10 Unmodified _KKVHPKLPLR_ 0 0 0 REV__ENST00000561481.1_1_16:74496494-74496551:-|nuORF REV__ENST00000561481.1_1_16:74496494-74496551:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 608.406005859375 2 608.40605 1214.79755 0.55629 0.00033845 -0.6534 -0.00039753 -0.097108 -5.9081E-05 608.4054952196462 108.18 0.38388 111.86 111.76 112.15 3.6813 90 37 3 0 0 0 0.56309 1 25628 25628 1.6526 0 1 7528600 + 17671 23028 11099 11105 21285 21285 0.19873933964299795 KKVHPKLPLR 10 Unmodified _KKVHPKLPLR_ 0 0 0 REV__ENST00000561481.1_1_16:74496494-74496551:-|nuORF REV__ENST00000561481.1_1_16:74496494-74496551:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 608.40605 1214.79755 0.48893 0.00029747 -0.56336 -0.00034275 -0.074436 -4.5288E-05 608.4055067990332 108.23 0.41231 111.91 111.72 112.13 3.6746 0.023821 6.2115E-05 NaN 1.6526 107 46 3 NaN NaN NaN NaN 0 NaN NaN 0 5548500 + 17672 23028 11099 11105 0.19873933964299795 KKVIGHQEN 9 Unmodified _KKVIGHQEN_ 0 0 0 L1MA3_dup1217|chr2:210115977-210117666:+|1.2748278234702763|0.0609960049824071|4.39|150.0|38|2|sense L1MA3_dup1217|chr2:210115977-210117666:+|1.2748278234702763|0.0609960049824071|4.39|150.0|38|2|sense L1MA3_dup1217|chr2:210115977-210117666:+|1.2748278234702763|0.0609960049824071|4.39|150.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 526.796875 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 20.786 1 24.193 23.693 24.693 3.4074 0 0 0 0.39598 1 2218 2218 1.6526 0.85899 1 17673 9465 11100 11106 21286 21286 0.05371663566097595 KKVISYWR 8 Unmodified _KKVISYWR_ 0 0 0 ENST00000467015.1_1_1:226016586-226019776:+|nuORF;ENSG00000143819|ENST00000272167|EPHX1 ENST00000467015.1_1_1:226016586-226019776:+|nuORF ENST00000467015.1_1_1:226016586-226019776:+|nuORF MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 33.511 1 33.511 33.011 34.011 0 0 0 0 0.40746 1 5870 5870 0.69038 0 1 17674 3328 11101 11107 21287 21287 0.09258032330785682 KKVKHIRLKK 10 Unmodified _KKVKHIRLKK_ 0 0 0 REV__Tigger3b_dup1073|chr3:41209532-41210171:-|2.378853172626077|0.1093960353914741|4.44|151.0|22|3|sense REV__Tigger3b_dup1073|chr3:41209532-41210171:-|2.378853172626077|0.1093960353914741|4.44|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 639.4468383789062 2 639.448249 1276.88194 NaN NaN NaN NaN NaN NaN NaN 61.202 1 61.202 60.702 61.702 0 0 0 0 0.53105 1 13609 13609 0.40072 0.40072 1 + 17675 32726 11102 11108 21288 21288 0.2545788478103077 KKVKHKLS 8 Unmodified _KKVKHKLS_ 0 0 0 L1ME1_dup23979|chr13:72873693-72874748:+|1.2107702984255329|0.0127345896555347|6.57|150.0|32|3|sense L1ME1_dup23979|chr13:72873693-72874748:+|1.2107702984255329|0.0127345896555347|6.57|150.0|32|3|sense L1ME1_dup23979|chr13:72873693-72874748:+|1.2107702984255329|0.0127345896555347|6.57|150.0|32|3|sense MSMS UPN46_class_I_Rep_3 1 484.326171875 2 484.324194 966.633835 NaN NaN NaN NaN NaN NaN NaN 103.24 1 103.24 102.74 103.74 0 0 0 0 0.40753 1 25195 25195 0.6015 0 1 17676 12319 11103 11109 21289 21289 0.149183361934206 KKVKKIII 8 Unmodified _KKVKKIII_ 0 0 0 REV__L1MC5_dup2137|chr2:229824292-229825416:+|1.5103235687908991|0.0517118822511187|4.87|151.0|51|1|anti-sense REV__L1MC5_dup2137|chr2:229824292-229825416:+|1.5103235687908991|0.0517118822511187|4.87|151.0|51|1|anti-sense MSMS UPN46_class_I_Rep_3 1 485.3630676269531 2 485.362788 968.711023 NaN NaN NaN NaN NaN NaN NaN 100.44 1 100.44 99.939 100.94 0 0 0 0 0.40798 1 24481 24481 0 0 1 + 17677 27074 11104 11110 21290 21290 0.22541554409758646 KKVKKKKKK 9 Unmodified _KKVKKKKKK_ 0 0 0 ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron;ENSG00000187257|ENST00000334955|RSBN1L REV__Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|20|2|sense;ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 572.2452392578125 2 571.926618 1141.83868 NaN NaN NaN NaN NaN NaN NaN 76.475 1 79.985 79.485 80.485 3.5102 0 0 0 0.4029 1 18163 18163 0 0 1 17678 32661;5187 11105 11111 21291 21291 0.27343695003787616 KKVKKKKKKK 10 Unmodified _KKVKKKKKKK_ 0 0 0 ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron;ENSG00000187257|ENST00000334955|RSBN1L ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN47_class_I_Rep_2 3 635.9758911132812 2 635.974099 1269.93365 NaN NaN NaN NaN NaN NaN NaN 46.677 1 50.029 49.529 50.529 3.3515 0 0 0 0.53105 1 9952 9952 0 0 1 17679 5187 11106 11112 21292 21292 0.309476284749735 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 472.31207275390625 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 73.013 1 73.013 72.513 73.513 0 0 0 0 0.40738 1 16904 16904 0.79363 0 1 + 17680 32315 11107 11113 21293 21293 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 472.3377380371094 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 67.906 1 71.173 70.673 71.673 3.2678 0 0 0 0.40738 1 16401 16401 0.79363 0 1 + 17681 32315 11107 11113 21294 21294 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 472.3379211425781 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 70.3 1 73.583 73.083 74.083 3.2828 0 0 0 0.40738 1 17121 17121 0.79363 0 1 + 17682 32315 11107 11113 21295 21295 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 472.3379211425781 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 70.575 1 73.858 73.358 74.358 3.2828 0 0 0 0.40738 1 17203 17203 0.79363 0 1 + 17683 32315 11107 11113 21296 21296 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 472.33807373046875 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 72.65 1 75.947 75.447 76.447 3.2971 0 0 0 0.40738 1 17820 17820 0.79363 0 1 + 17684 32315 11107 11113 21297 21297 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 472.7890319824219 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 90.803 1 94.264 93.764 94.764 3.4613 0 0 0 0.40738 1 22507 22507 0.79363 0 1 + 17685 32315 11107 11113 21298 21298 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 472.337890625 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 70.866 1 74.077 73.577 74.577 3.2113 0 0 0 0.40738 1 17360 17360 0.79363 0 1 + 17686 32315 11107 11113 21299 21299 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 472.3382568359375 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 75.676 1 78.934 78.434 79.434 3.2573 0 0 0 0.40738 1 18786 18786 0.79363 0 1 + 17687 32315 11107 11113 21300 21300 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 472.3378601074219 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 76.573 1 79.838 79.338 80.338 3.2649 0 0 0 0.40798 1 19042 19042 0 0 1 + 17688 32315 11107 11113 21301 21301 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 472.2879333496094 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 98.064 1 101.49 100.99 101.99 3.4216 0 0 0 0.40738 1 24289 24289 0.79363 0 1 + 17689 32315 11107 11113 21302 21302 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 472.3384094238281 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 75.381 1 78.881 78.381 79.381 3.4996 0 0 0 0.40738 1 17855 17855 0.79363 0 1 + 17690 32315 11107 11113 21303 21303 0.18536390996007412 KKVKKSIL 8 Unmodified _KKVKKSIL_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 472.33795166015625 2 472.33677 942.658987 NaN NaN NaN NaN NaN NaN NaN 70.994 1 74.53 74.03 75.03 3.5359 0 0 0 0.40738 1 16538 16538 0.79363 0 1 + 17691 32315 11107 11113 21304 21304 0.18536390996007412 KKVPLLLLVLI 11 Unmodified _KKVPLLLLVLI_ 0 0 0 REV__ENSG00000143797|ENST00000305997|MBOAT2 REV__ENSG00000143797|ENST00000305997|MBOAT2 MSMS UPN46_class_I_Rep_3 1 624.8853149414062 2 624.95451 1247.89447 NaN NaN NaN NaN NaN NaN NaN 62.056 1 62.056 61.556 62.556 0 0 0 0 0.38417 1 13855 13855 0 0 1 + 17692 19464 11108 11114 21305 21305 0.28043483400756486 KKVPLLLLVLI 11 Unmodified _KKVPLLLLVLI_ 0 0 0 REV__ENSG00000143797|ENST00000305997|MBOAT2 REV__ENSG00000143797|ENST00000305997|MBOAT2 MSMS UPN46_class_I_Rep_3 1 624.9564208984375 2 624.95451 1247.89447 NaN NaN NaN NaN NaN NaN NaN 62.949 1 62.949 62.449 63.449 0 0 0 0 0.38417 1 14106 14106 0 0 1 + 17693 19464 11108 11114 21306 21306 0.28043483400756486 KKVPLLLLVLI 11 Unmodified _KKVPLLLLVLI_ 0 0 0 REV__ENSG00000143797|ENST00000305997|MBOAT2 REV__ENSG00000143797|ENST00000305997|MBOAT2 MSMS UPN46_class_I_Rep_3 1 624.9560546875 2 624.95451 1247.89447 NaN NaN NaN NaN NaN NaN NaN 86.66 1 86.66 86.16 87.16 0 0 0 0 0.38417 1 20724 20724 0 0 1 + 17694 19464 11108 11114 21307 21307 0.28043483400756486 KKVRFLPV 8 Unmodified _KKVRFLPV_ 0 0 0 HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|38|2|sense HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|38|2|sense HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 493.8280029296875 2 493.829112 985.643671 NaN NaN NaN NaN NaN NaN NaN 65.177 1 68.433 67.933 68.933 3.2556 0 0 0 0.40738 1 15577 15577 0.79363 0.19213 1 17695 8125 11109 11115 21308 21308 0.1502752419880835 KKVSKKKK 8 Unmodified _KKVSKKKK_ 0 0 0 REV__ENSG00000177679|ENST00000611745|SRRM3 REV__ENSG00000177679|ENST00000611745|SRRM3 MSMS UPN47_class_I_Rep_2 3 487.75042724609375 2 487.347669 972.680785 NaN NaN NaN NaN NaN NaN NaN 34.25 1 37.69 37.19 38.19 3.4398 0 0 0 0.40798 1 6171 6171 0 0 1 + 17696 20629 11110 11116 21309 21309 0.1933519574456568 KKVSKRQL 8 Unmodified _KKVSKRQL_ 0 0 0 REV__L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|9|1|sense REV__L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 493.8287048339844 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 33.397 1 36.917 36.417 37.417 3.5201 0 0 0 0.40746 1 5203 5203 0.69038 0 1 + 17697 30552 11111 11117 21310 21310 0.14625434705089901 KKVVETRQ 8 Unmodified _KKVVETRQ_ 0 0 0 REV__ENST00000555791.5_1_15:91527220-91537794:-|nuORF REV__ENST00000555791.5_1_15:91527220-91537794:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 494.3475341796875 2 494.300916 986.587279 0.24591 0.00012155 -0.33039 -0.00016331 -0.08448 -4.1759E-05 494.30086481989866 89.082 0.35163 92.756 92.709 93.061 3.6738 60 38 2 0 0 0 0.72333 1 22318 22318 2.0598 0.21551 1 117440 + 17698 21163 11112 11118 21311 21311 0.09344851571472645 KKVVETRQ 8 Unmodified _KKVVETRQ_ 0 0 0 REV__ENST00000555791.5_1_15:91527220-91537794:-|nuORF REV__ENST00000555791.5_1_15:91527220-91537794:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 494.300916 986.587279 0.30519 0.00015086 0.052449 2.5926E-05 0.35764 0.00017678 494.30095101995147 92.812 0.28595 92.812 92.631 92.917 0 0.028221 0.00011917 NaN 2.0598 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 259880 + 17699 21163 11112 11118 0.09344851571472645 KKVVTGMF 8 Unmodified _KKVVTGMF_ 0 0 0 REV__ENSG00000116711.10,PLA2G4A,chr1,+,I12.1,186946962,186950656|66|9.96|5|intron REV__ENSG00000116711.10,PLA2G4A,chr1,+,I12.1,186946962,186950656|66|9.96|5|intron MULTI-MSMS UPN47_class_I_Rep_1 2 455.2646179199219 2 455.264956 908.515359 0.0090507 4.1205E-06 -0.038502 -1.7529E-05 -0.029451 -1.3408E-05 455.26483514017036 53.815 0.99016 57.342 56.896 57.886 3.5278 85 57 2 0 0 0 0.82752 1 11977 11977 0.69038 0.69038 1 72307 + 17700 18613 11113 11119 21312 21312 0.05744220893416241 KKVWERVRH 9 Unmodified _KKVWERVRH_ 0 0 0 REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|74|3|sense REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|74|3|sense MSMS UPN46_class_I_Rep_3 1 619.368896484375 2 619.367456 1236.72036 NaN NaN NaN NaN NaN NaN NaN 12.602 1 12.602 12.102 13.102 0 0 0 0 0.4007 1 153 153 0.52476 0.066424 1 + 17701 24125 11114 11120 21313 21313 0.11146715747986491 KKWCTRRL 8 Unmodified _KKWCTRRL_ 0 0 0 L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|69|2|sense L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|69|2|sense L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|69|2|sense MSMS UPN47_class_I_Rep_1 2 545.8289184570312 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 53.836 1 57.364 56.864 57.864 3.5278 0 0 0 0.40625 1 12095 12095 2.3027 0.24298 1 17702 14278 11115 11121 21314 21314 0.0817261054746723 KKWDIMDAV 9 Unmodified _KKWDIMDAV_ 0 0 0 REV__L1PA4_dup4492|chr6:44900044-44906175:+|1.5536649467164132|0.0456383338746951|5.09|151.0|16|1|sense REV__L1PA4_dup4492|chr6:44900044-44906175:+|1.5536649467164132|0.0456383338746951|5.09|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.2880859375 2 553.289159 1104.56377 -0.013486 -7.4617E-06 -0.36812 -0.00020367 -0.3816 -0.00021114 553.2890217986828 36.493 0.83889 40.162 39.714 40.553 3.6692 101 66 2 0 0 0 0.38714 1 6731 6731 8.7454 1.1365 1 115670 + 17703 29638 11116 11122 21315 21315 0.015666697426013343 KKWKLTKMD 9 Unmodified _KKWKLTKMD_ 0 0 0 ENST00000480581.1_1_1:223939741-223945196:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2 ENST00000480581.1_1_1:223939741-223945196:+|nuORF ENST00000480581.1_1_1:223939741-223945196:+|nuORF MSMS UPN47_class_I_Rep_1 2 589.3431396484375 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 88.162 1 91.818 91.318 92.318 3.6563 0 0 0 0.4007 1 22045 22045 0.52476 0 1 17704 3972 11117 11123 21316 21316 0.08763210939059718 KKWKRWNPL 9 Unmodified _KKWKRWNPL_ 0 0 0 REV__L1MB7_dup414|chr1:41149090-41150220:-|1.230337939140386|0.0943679504920703|3.7|151.0|28|3|sense REV__L1MB7_dup414|chr1:41149090-41150220:-|1.230337939140386|0.0943679504920703|3.7|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 628.3744506835938 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 38.431 1 38.431 37.931 38.931 0 0 0 0 0.4007 1 7316 7316 0.52476 0.066424 1 + 17705 26260 11118 11124 21317 21317 0.11776787896133101 KKWRRKMLYKK 11 Unmodified _KKWRRKMLYKK_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MULTI-SECPEP UPN48_class_I_Rep_3 7 521.6571655273438 3 522.32554 1563.95479 0.29639 0.00015481 0.62679 0.00032739 0.92318 0.0004822 522.3257531882405 55.737 0.13279 59.292 59.233 59.366 3.5554 15 10 2 0 0 0 22.551 1 11848 11848 0.08335 0 1 306180 + 17706 18154 11119 11125 21318 21318 0.1953727051215992 KKWYFATG 8 Unmodified _KKWYFATG_ 0 0 0 REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|30|2|sense REV__Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 500.76605224609375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 111.5 1 115.07 114.57 115.57 3.572 0 0 0 0.40746 1 27508 27508 0.69038 0 1 + 17707 32539 11120 11126 21319 21319 0.018023926226987896 KKYAVLYV 8 Unmodified _KKYAVLYV_ 0 0 0 L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|3|1|sense L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|3|1|sense L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 492.2989807128906 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 42.564 1 46.321 45.821 46.821 3.7579 0 0 0 0.40738 1 7894 7894 0.79363 0 1 17708 12177 11121 11127 21320 21320 0.09316422833660454 KKYFEKWKL 9 Unmodified _KKYFEKWKL_ 0 0 0 L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|2|1|sense L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|2|1|sense L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 635.3696899414062 2 635.371341 1268.72813 NaN NaN NaN NaN NaN NaN NaN 93.438 1 97.174 96.674 97.674 3.736 0 0 0 0.4007 1 23244 23244 0.52476 0 1 17709 13326 11122 11128 21321 21321 0.10451430224861724 KKYGKVWG 8 Unmodified _KKYGKVWG_ 0 0 0 ENSG00000160868|ENST00000651514|CYP3A4 ENSG00000160868|ENST00000651514|CYP3A4 ENSG00000160868|ENST00000651514|CYP3A4 MSMS UPN48_class_I_Rep_3 7 483.2809143066406 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 67.3 1 70.808 70.308 71.308 3.5077 0 0 0 0.40404 1 15354 15354 5.2307 2.6532 1 17710 3890 11123 11129 21322 21322 0.06574385376654845 KKYHQSPL 8 Unmodified _KKYHQSPL_ 0 0 0 REV__L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|30|1|sense REV__L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|30|1|sense MSMS UPN47_class_I_Rep_3 4 500.7839660644531 2 500.782359 999.550165 NaN NaN NaN NaN NaN NaN NaN 43.486 1 46.728 46.228 47.228 3.2419 0 0 0 0.40643 1 9027 9027 2.0598 0 1 + 17711 30392 11124 11130 21323 21323 0.050371800257153154 KKYIQQKYI 9 Unmodified _KKYIQQKYI_ 0 0 0 L1ME2_dup12249|chr20:36925506-36926589:+|2.3151667523162605|0.0958268255798873|4.59|151.0|53|1|anti-sense L1ME2_dup12249|chr20:36925506-36926589:+|2.3151667523162605|0.0958268255798873|4.59|151.0|53|1|anti-sense L1ME2_dup12249|chr20:36925506-36926589:+|2.3151667523162605|0.0958268255798873|4.59|151.0|53|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.3612060546875 2 606.360973 1210.70739 0.55099 0.0003341 0.25892 0.000157 0.80991 0.0004911 606.3609548786804 108.62 0.61702 112.3 112.21 112.82 3.6751 131 70 2 0 0 0 0.41259 1 25853 25853 7.2892 0 1 37548000 17712 12470 11125 11131 21324 21324 0.11046839845243994 KKYKKKRSKK 10 Unmodified _KKYKKKRSKK_ 0 0 0 ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP ENST00000477789.5_1_X:119059185-119070773:-|nuORF ENST00000477789.5_1_X:119059185-119070773:-|nuORF MSMS UPN48_class_I_Rep_2 6 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.497 1 28.137 27.637 28.637 3.6397 0 0 0 0.53105 1 2854 2854 0.15932 0 1 17713 1591 11126 11132 21325 21325 0.22417277055819795 KKYKLLWV 8 Unmodified _KKYKLLWV_ 0 0 0 L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|52|3|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|52|3|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|52|3|sense MSMS UPN47_class_I_Rep_3 4 539.8220825195312 2 539.344595 1076.67464 NaN NaN NaN NaN NaN NaN NaN 90.13 1 93.527 93.027 94.027 3.3976 0 0 0 0.40738 1 22591 22591 0.79363 0 1 17714 9553 11127 11133 21326 21326 0.13936677513015638 KKYRNFYDY 9 Unmodified _KKYRNFYDY_ 0 0 0 REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|6|1|sense REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 432.8851623535156 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 78.656 1 78.656 78.156 79.156 0 0 0 0 0.4007 1 18434 18434 0.23584 0.095952 1 + 17715 29378 11128 11134 21327 21327 -0.006117980909493781 KKYRNFYDY 9 Unmodified _KKYRNFYDY_ 0 0 0 REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|6|1|sense REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 432.8851318359375 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 60.748 1 64.226 63.726 64.726 3.4785 0 0 0 0.4007 1 13439 13439 0.23584 0 1 + 17716 29378 11128 11134 21328 21328 -0.006117980909493781 KKYSLYMDR 9 Unmodified _KKYSLYMDR_ 0 0 0 ENST00000389682.7_1_2:122523087-122523240:+|nuORF ENST00000389682.7_1_2:122523087-122523240:+|nuORF ENST00000389682.7_1_2:122523087-122523240:+|nuORF MSMS UPN48_class_I_Rep_1 5 401.87799072265625 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 16.528 1 20.05 19.55 20.55 3.5217 0 0 0 0.4007 1 823 823 0.23584 0 1 17717 6512 11129 11135 21329 21329 0.018577436626628696 KKYTSIAPD 9 Unmodified _KKYTSIAPD_ 0 0 0 REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|25|1|sense REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|25|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 512.25341796875 2 511.779482 1021.54441 0.013818 7.0718E-06 -0.1238 -6.336E-05 -0.10998 -5.6288E-05 511.77931245426817 46.982 0.5388 50.677 50.387 50.926 3.6951 43 31 2 0 0 0 0.11734 1 10062 10062 11.495 0 1 83386 + 17718 24270 11130 11136 21330 21330 0.03450036723370431 KKYVYMKMEKP 11 Unmodified _KKYVYMKMEKP_ 0 0 0 REV__L1MB7_dup14040|chr10:86444038-86444860:+|1.0079886324686766|0.2135661405586194|2.24|151.0|5|1|sense REV__L1MB7_dup14040|chr10:86444038-86444860:+|1.0079886324686766|0.2135661405586194|2.24|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 482.2802734375 3 482.261214 1443.76181 NaN NaN NaN NaN NaN NaN NaN 28.799 1 32.298 31.798 32.798 3.4986 0 0 0 0.38417 1 4520 4520 0.50596 0.34663 1 + 17719 26138 11131 11137 21331 21331 0.057683476100919506 KKYWKIHHN 9 Unmodified _KKYWKIHHN_ 0 0 0 L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|31|2|sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|31|2|sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 627.3489379882812 2 627.348732 1252.68291 NaN NaN NaN NaN NaN NaN NaN 44.402 1 44.402 43.902 44.902 0 0 0 0 0.39518 1 8947 8947 1.8442 0.19162 1 17720 12100 11132 11138 21332 21332 0.06667624482361134 KLACRKYL 8 Unmodified _KLACRKYL_ 0 0 0 REV__ENST00000379535.8_1_15:79189454-79189514:+|nuORF REV__ENST00000379535.8_1_15:79189454-79189514:+|nuORF MSMS UPN48_class_I_Rep_3 7 497.7830505371094 2 497.796955 993.579357 NaN NaN NaN NaN NaN NaN NaN 46.702 1 50.338 49.838 50.838 3.6363 0 0 0 0.40625 1 9087 9087 2.3027 1.5091 1 + 17721 22041 11133 11139 21333 21333 0.08231001050330633 KLADAQAFY 9 Unmodified _KLADAQAFY_ 0 0 0 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 MULTI-MSMS UPN47_class_I_Rep_1 2 513.7662963867188 2 513.766374 1025.5182 0.27711 0.00014237 -0.1144 -5.8777E-05 0.16271 8.3594E-05 513.7662865007271 59.146 0.93292 62.563 62.163 63.096 3.4171 119 63 2 0 0 0 0.31407 1 13713 13713 13.042 2.2185 1 313310 + 17722 18937 11134 11140 21334 21334 0.0064576755189591495 KLADAQAFY 9 Unmodified _KLADAQAFY_ 0 0 0 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 MULTI-MSMS UPN47_class_I_Rep_2 3 513.7661743164062 2 513.766374 1025.5182 0.16969 8.7181E-05 0.022841 1.1735E-05 0.19253 9.8916E-05 513.7662942105275 59.33 0.95332 62.603 62.282 63.236 3.2731 136 64 3 0 0 0 0.19147 2 13810 13810;13876 21.537 5.6898 1 238110 + 17723 18937 11134 11140 21335;21336 21335 0.0064576755189591495 KLADAQAFY 9 Unmodified _KLADAQAFY_ 0 0 0 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2 MULTI-MSMS UPN47_class_I_Rep_3 4 513.7664184570312 2 513.766374 1025.5182 0.18748 9.6321E-05 0.1798 9.2374E-05 0.36728 0.0001887 513.7663550071871 59.56 0.8615 62.725 62.304 63.165 3.1651 144 60 3 0 0 0 0.26468 3 13848 13848;13886;13923 16.149 2.2431 1 259850 + 17724 18937 11134 11140 21337;21338;21339 21337 0.0064576755189591495 KLAEKLTIL 9 Unmodified _KLAEKLTIL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_1 2 514.839111328125 2 514.839342 1027.66413 0.025441 1.3098E-05 -0.091326 -4.7018E-05 -0.065885 -3.392E-05 514.8391749872914 46.796 0.86202 50.491 50.104 50.966 3.6951 85 55 2 0 0 0 0.13455 2 9958 9958;10001 27.223 3.2961 1 149940 17725 2418 11135 11141 21340;21341 21340 0.15140650067951356 KLAEVGRVYL 10 Unmodified _KLAEVGRVYL_ 0 0 0 ENST00000592226.5_1_17:42458037-42462568:-|nuORF;nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B ENST00000592226.5_1_17:42458037-42462568:-|nuORF ENST00000592226.5_1_17:42458037-42462568:-|nuORF MSMS UPN47_class_I_Rep_1 2 574.344970703125 2 574.345323 1146.67609 NaN NaN NaN NaN NaN NaN NaN 44.633 1 48.333 47.833 48.833 3.6999 0 0 0 0.53105 1 9298 9298 4.897 0.95262 1 17726 709 11136 11142 21342 21342 0.10862266811159316 KLAKGKIAL 9 Unmodified _KLAKGKIAL_ 0 0 0 REV__ENST00000371602.8_1_20:49506362-49506494:-|nuORF REV__ENST00000371602.8_1_20:49506362-49506494:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.3282470703125 2 471.328945 940.643337 NaN NaN NaN NaN NaN NaN NaN 17.035 1 20.393 19.893 20.893 3.3581 0 0 0 0.38639 1 1173 1173 3.9444 0 1 + 17727 21964 11137 11143 21343 21343 0.17064104478936315 KLALSCKLL 9 Unmodified _KLALSCKLL_ 0 0 0 REV__Charlie7_dup2164|chr9:77830527-77830837:+|1.0482486811011529|0.016647923887141|5.98|150.0|19|3|anti-sense REV__Charlie7_dup2164|chr9:77830527-77830837:+|1.0482486811011529|0.016647923887141|5.98|150.0|19|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.8136901855469 2 494.814813 987.615073 NaN NaN NaN NaN NaN NaN NaN 68.554 1 72.063 71.563 72.563 3.5094 0 0 0 0.38073 1 15726 15726 5.2969 0.54088 1 + 17728 17394 11138 11144 21344 21344 0.12077038507345605 KLANTPQPI 9 Unmodified _KLANTPQPI_ 0 0 0 REV__nc|ENSG00000100592|Q9Y4D1-3|DAAM1 REV__nc|ENSG00000100592|Q9Y4D1-3|DAAM1 MSMS UPN47_class_I_Rep_3 4 491.2900085449219 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 39.389 1 42.627 42.127 43.127 3.238 0 0 0 0.27207 1 7776 7776 12.241 0 1 + 17729 18122 11139 11145 21345 21345 0.07442046822893644 KLARHKRTTT 10 Unmodified _KLARHKRTTT_ 0 0 0 L1MB4_dup119|chr1:41195297-41197700:+|1.103012061216287|0.0374782170961977|4.88|150.0|84|3|sense L1MB4_dup119|chr1:41195297-41197700:+|1.103012061216287|0.0374782170961977|4.88|150.0|84|3|sense L1MB4_dup119|chr1:41195297-41197700:+|1.103012061216287|0.0374782170961977|4.88|150.0|84|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 606.8713989257812 2 606.370195 1210.72584 0.63468 0.00038485 -1.1035 -0.00066911 -0.46878 -0.00028426 606.3700841974702 108.53 0.055099 112.07 112.04 112.09 3.5333 16 7 3 0 0 0 0.56309 1 26341 26341 1.6526 0 1 10519000 17730 10474 11140 11146 21346 21346 0.12890394539772387 KLARLYKKN 9 Unmodified _KLARLYKKN_ 0 0 0 L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|8|2|sense L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|8|2|sense L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 567.3645629882812 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 32.594 1 36.244 35.744 36.744 3.6497 0 0 0 0.4007 1 5050 5050 0.52476 0 1 17731 10753 11141 11147 21347 21347 0.14701679284939928 KLAVLLVTL 9 Unmodified _KLAVLLVTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MSMS UPN47_class_I_Rep_1 2 485.33978271484375 2 485.338978 968.663404 NaN NaN NaN NaN NaN NaN NaN 74.586 1 77.98 77.48 78.48 3.3937 0 0 0 0.092202 1 18364 18364 26.268 0 1 17732 1924 11142 11148 21348 21348 0.17781855418922987 KLAVLLVTL 9 Unmodified _KLAVLLVTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MSMS UPN47_class_I_Rep_1 2 485.3395690917969 2 485.338978 968.663404 NaN NaN NaN NaN NaN NaN NaN 74.712 1 78.106 77.606 78.606 3.3937 0 0 0 0.092202 1 18403 18403 26.268 0 1 17733 1924 11142 11148 21349 21349 0.17781855418922987 KLAVLLVTL 9 Unmodified _KLAVLLVTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS UPN47_class_I_Rep_3 4 485.34063720703125 2 485.338978 968.663404 0.15554 7.549E-05 0.80638 0.00039137 0.96192 0.00046686 485.33916438235315 75.142 0.90438 78.388 78.111 79.015 3.2464 113 87 2 0 0 0 0.14216 2 18570 18570;18575 26.268 0 1 75658 17734 1924 11142 11148 21350;21351 21350 0.17781855418922987 KLAVLLVTL 9 Unmodified _KLAVLLVTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 485.338978 968.663404 0.24046 0.0001167 1.5412 0.00074801 1.7817 0.00086472 485.3397978249454 74.816 0.12199 78.128 78.028 78.15 3.3127 -0.1299 0.00062248 NaN 26.268 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 64347 17735 1924 11142 11148 0.17781855418922987 KLAVTGLTLL 10 Unmodified _KLAVTGLTLL_ 0 0 0 L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|391|3|anti-sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|391|3|anti-sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|391|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.83935546875 2 514.839342 1027.66413 -0.035452 -1.8252E-05 0.24322 0.00012522 0.20776 0.00010697 514.8393916925186 47.333 0.60964 50.683 50.343 50.952 3.3504 68 42 2 0 0 0 0.53004 1 10208 10208 8.1555 0 1 123850 17736 15181 11143 11149 21352 21352 0.15140650067951356 KLAVTGLTLL 10 Unmodified _KLAVTGLTLL_ 0 0 0 L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|391|3|anti-sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|391|3|anti-sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|391|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.341064453125 2 514.839342 1027.66413 0.18301 9.4223E-05 -0.11298 -5.8165E-05 0.070037 3.6058E-05 514.8393097009358 47.563 0.51274 50.803 50.339 50.852 3.2405 54 35 2 0 0 0 0.51021 1 10246 10246 10.8 0 1 152970 17737 15181 11143 11149 21353 21353 0.15140650067951356 KLCCLSFYY 9 Unmodified _KLCCLSFYY_ 0 0 0 L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|191|3|anti-sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|191|3|anti-sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|191|3|anti-sense MSMS UPN47_class_I_Rep_2 3 570.2655639648438 2 570.266838 1138.51912 NaN NaN NaN NaN NaN NaN NaN 25.471 1 28.954 28.454 29.454 3.483 0 0 0 0.39518 1 3541 3541 1.8442 1.0506 1 17738 11021 11144 11150 21354 21354 -0.04459477395062095 KLCHQHTP 8 Unmodified _KLCHQHTP_ 0 0 0 REV__L1ME2_dup7814|chr10:5780250-5781345:+|1.870220208342952|0.2026287018722953|3.21|151.0|13|1|sense REV__L1ME2_dup7814|chr10:5780250-5781345:+|1.870220208342952|0.2026287018722953|3.21|151.0|13|1|sense MSMS UPN47_class_I_Rep_2 3 482.24432373046875 2 482.245086 962.47562 NaN NaN NaN NaN NaN NaN NaN 119.36 1 122.84 122.34 123.34 3.4793 0 0 0 0.40753 1 29234 29234 0.6015 0 1 + 17739 27886 11145 11151 21355 21355 -0.007119060573359093 KLCKFPAP 8 Unmodified _KLCKFPAP_ 0 0 0 Ricksha_c_dup1165|chr22:42248610-42249974:+|1.327221413451206|0.0132170824472374|6.65|151.0|60|1|anti-sense Ricksha_c_dup1165|chr22:42248610-42249974:+|1.327221413451206|0.0132170824472374|6.65|151.0|60|1|anti-sense Ricksha_c_dup1165|chr22:42248610-42249974:+|1.327221413451206|0.0132170824472374|6.65|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 452.25897216796875 2 452.259674 902.504795 NaN NaN NaN NaN NaN NaN NaN 34.329 1 38.015 37.515 38.515 3.6859 0 0 0 0.40738 1 6163 6163 0.79363 0 1 17740 32831 11146 11152 21356 21356 0.04964238238949292 KLCWNCHDT 9 Unmodified _KLCWNCHDT_ 0 0 0 REV__MER21C_dup1011|chr3:49990913-49991617:-|3.0882735660351224|0.0564982259694133|5.77|150.0|26|3|sense REV__MER21C_dup1011|chr3:49990913-49991617:-|3.0882735660351224|0.0564982259694133|5.77|150.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 560.4375610351562 2 560.239144 1118.46373 NaN NaN NaN NaN NaN NaN NaN 102.45 1 105.97 105.47 106.47 3.5151 0 0 0 0.4007 1 24944 24944 0.52476 0 1 + 17741 31217 11147 11153 21357 21357 -0.09075890862845881 KLDALSLSGI 10 Unmodified _KLDALSLSGI_ 0 0 0 REV__Charlie1a_dup783|chr2:108534908-108536013:-|1.132545696123629|0.0271360326796518|5.38|151.0|50|1|anti-sense REV__Charlie1a_dup783|chr2:108534908-108536013:-|1.132545696123629|0.0271360326796518|5.38|151.0|50|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 508.8031311035156 2 508.802957 1015.59136 0.17599 8.9542E-05 0.023461 1.1937E-05 0.19945 0.00010148 508.80290161375774 35.351 0.85936 35.351 35.04 35.9 0 115 60 3 0 0 0 0.3776 1 6376 6376 21.537 1.1224 1 328310 + 17742 17353 11148 11154 21358 21358 0.08418896274520193 KLDDLHTLY 9 Unmodified _KLDDLHTLY_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MULTI-SECPEP UPN47_class_I_Rep_1 2 558.7697143554688 2 559.298039 1116.58152 0.09784 5.4722E-05 -1.1075 -0.00061941 -1.0096 -0.00056469 559.2972038198291 44.669 0.7445 48.369 48.025 48.769 3.6999 94 53 2 0 0 0 0.06703 1 9304 9304 24.021 9.1823 1 155700 17743 892 11149 11155 21359 21359 0.027897082691424657 KLDDLHTLY 9 Unmodified _KLDDLHTLY_ 0 0 0 nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC nc|ENSG00000047932|Q9HD26-2|GOPC MULTI-SECPEP UPN47_class_I_Rep_2 3 559.777587890625 2 559.298039 1116.58152 0.20747 0.00011604 -1.1757 -0.00065757 -0.96823 -0.00054153 559.2970319043646 45.028 0.61159 48.384 48.09 48.702 3.3555 62 34 2 0 0 0 0.095537 1 9441 9441 21.537 2.28 1 99351 17744 892 11149 11155 21360 21360 0.027897082691424657 KLDETGNSL 9 Unmodified _KLDETGNSL_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_2 3 488.7506103515625 2 488.750921 975.48729 -0.12713 -6.2134E-05 0.81213 0.00039693 0.68501 0.0003348 488.7510077871482 27.373 0.47632 30.871 30.624 31.101 3.4986 69 37 2 0 0 0 0.35123 1 4117 4117 10.8 0 1 94179 17745 2720;33467 11150 11156 21361 21361 -0.0014343055297558749 KLDIWPVYI 9 Unmodified _KLDIWPVYI_ 0 0 0 L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|155|2|anti-sense L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|155|2|anti-sense L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|155|2|anti-sense MSMS UPN48_class_I_Rep_2 6 573.8311767578125 2 573.831517 1145.64848 NaN NaN NaN NaN NaN NaN NaN 87.978 1 91.706 91.206 92.206 3.7279 0 0 0 0.40038 1 20939 20939 0.6015 0 1 17746 13806 11151 11157 21362 21362 0.08148363550913018 KLDNRWGK 8 Unmodified _KLDNRWGK_ 0 0 0 REV__L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|18|2|sense REV__L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 508.8027648925781 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 30.919 1 34.401 33.901 34.901 3.4821 0 0 0 0.39819 1 5165 5165 8.5933 0 1 + 17747 26961 11152 11158 21363 21363 0.04915698257229906 KLDNRWGK 8 Unmodified _KLDNRWGK_ 0 0 0 REV__L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|18|2|sense REV__L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 508.8028869628906 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 31.018 1 34.33 33.83 34.83 3.3116 0 0 0 0.38547 1 5232 5232 13.508 0 1 + 17748 26961 11152 11158 21364 21364 0.04915698257229906 KLDPTKTTL 9 Unmodified _KLDPTKTTL_ 0 0 0 ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1 ENST00000522665.5_1_8:134254200-134261004:-|nuORF ENST00000522665.5_1_8:134254200-134261004:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 508.8028869628906 2 508.802957 1015.59136 0.17599 8.9542E-05 0.023461 1.1937E-05 0.19945 0.00010148 508.80290161375774 35.351 0.85936 35.351 35.04 35.9 0 115 60 3 0 0 0 0.034404 6 6452 6372;6413;6414;6452;6494;6536 55.235 11.462 1 328310 17749 1689 11153 11159 21365;21366;21367;21368;21369;21370 21368 0.08418896274520193 KLDPTKTTL 9 Unmodified _KLDPTKTTL_ 0 0 0 ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1 ENST00000522665.5_1_8:134254200-134261004:-|nuORF ENST00000522665.5_1_8:134254200-134261004:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 508.8030700683594 2 508.802957 1015.59136 -0.21646 -0.00011014 0.26233 0.00013347 0.045862 2.3335E-05 508.8029998362504 30.519 0.89104 34.264 33.923 34.815 3.7449 155 70 3 0 0 0 0.15547 1 5076 5076 24.991 3.454 1 498240 17750 1689 11153 11159 21371 21371 0.08418896274520193 KLDPTKTTL 9 Unmodified _KLDPTKTTL_ 0 0 0 ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1 ENST00000522665.5_1_8:134254200-134261004:-|nuORF ENST00000522665.5_1_8:134254200-134261004:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 508.8028564453125 2 508.802957 1015.59136 -0.25086 -0.00012764 0.24427 0.00012429 -0.0065877 -3.3518E-06 508.8029587414969 30.736 0.87594 34.218 33.807 34.683 3.4821 161 67 3 0 0 0 0.031831 1 5084 5084 63.227 11.598 1 463580 17751 1689 11153 11159 21372 21372 0.08418896274520193 KLDPTKTTL 9 Unmodified _KLDPTKTTL_ 0 0 0 ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1 ENST00000522665.5_1_8:134254200-134261004:-|nuORF ENST00000522665.5_1_8:134254200-134261004:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 508.802957 1015.59136 -0.35434 -0.00018029 0.32245 0.00016407 -0.031885 -1.6223E-05 508.80305194655057 30.965 0.9318 34.276 33.926 34.858 3.3116 0.023692 3.5102E-05 NaN 63.227 183 76 3 NaN NaN NaN NaN 0 NaN NaN 0 445240 17752 1689 11153 11159 0.08418896274520193 KLDQLIEFY 9 Unmodified _KLDQLIEFY_ 0 0 0 ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D ENSG00000168918|ENST00000445964|INPP5D ENSG00000168918|ENST00000445964|INPP5D MULTI-MSMS UPN47_class_I_Rep_2 3 584.8162841796875 2 584.816064 1167.61758 0.40059 0.00023427 -0.18754 -0.00010968 0.21305 0.00012459 584.8159297434156 69.274 0.7614 72.55 72.205 72.966 3.2761 80 61 2 0 0 0 0.17897 1 16888 16888 22.736 4.5899 1 110440 17753 4395 11154 11160 21373 21373 0.04047165446013423 KLDQLIEFY 9 Unmodified _KLDQLIEFY_ 0 0 0 ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D ENSG00000168918|ENST00000445964|INPP5D ENSG00000168918|ENST00000445964|INPP5D MULTI-MSMS UPN47_class_I_Rep_3 4 584.8145141601562 2 584.816064 1167.61758 0.44613 0.0002609 -0.27619 -0.00016152 0.16994 9.9384E-05 584.8159292219758 69.381 0.81195 72.586 72.206 73.018 3.2044 83 63 2 0 0 0 0.14216 2 16853 16853;16964 26.268 3.6593 1 147850 17754 4395 11154 11160 21374;21375 21374 0.04047165446013423 KLDWVVTSH 9 Unmodified _KLDWVVTSH_ 0 0 0 REV__HSMAR1_dup211|chr5:75454276-75455541:+|1.9913931577127129|0.2703921333896549|2.88|151.0|4|1|sense REV__HSMAR1_dup211|chr5:75454276-75455541:+|1.9913931577127129|0.2703921333896549|2.88|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 542.7932739257812 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 36.864 1 40.371 39.871 40.871 3.507 0 0 0 0.39598 1 6202 6202 1.6526 0 1 + 17755 23954 11155 11161 21376 21376 0.032851453345756454 KLDYEFFDK 9 Unmodified _KLDYEFFDK_ 0 0 0 REV__L1MA8_dup10729|chr21:35030564-35031066:+|4.2400023726968055|0.0086877988947353|8.93|151.0|14|3|sense REV__L1MA8_dup10729|chr21:35030564-35031066:+|4.2400023726968055|0.0086877988947353|8.93|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 602.7962036132812 2 602.797872 1203.58119 NaN NaN NaN NaN NaN NaN NaN 65.769 1 69.221 68.721 69.721 3.4516 0 0 0 0.34878 1 14987 14987 8.1555 1.0538 1 + 17756 25529 11156 11162 21377 21377 -0.012457114507242295 KLDYHLETF 9 Unmodified _KLDYHLETF_ 0 0 0 ENSG00000106648|ENST00000392800|GALNTL5 ENSG00000106648|ENST00000392800|GALNTL5 ENSG00000106648|ENST00000392800|GALNTL5 MSMS UPN47_class_I_Rep_1 2 583.2963256835938 2 583.298039 1164.58152 NaN NaN NaN NaN NaN NaN NaN 41.446 1 45.118 44.618 45.618 3.6719 0 0 0 0.39036 1 8324 8324 2.9952 0.41776 1 17757 1798 11157 11163 21378 21378 0.005817082691237374 KLEAFLLRS 9 Unmodified _KLEAFLLRS_ 0 0 0 L1MC1_dup6797|chr8:67186483-67186959:+|1.4854416167108744|0.0969574665195713|3.94|151.0|10|2|sense;L1MC1_dup12506|chr20:24974899-24977406:+|1.250759439663505|0.186332026958253|2.75|151.0|2|1|sense;L1MC_dup2688|chr5:177649786-177650522:-|1.7217957973933198|0.0182233169999843|6.56|151.0|25|3|sense L1MC1_dup6797|chr8:67186483-67186959:+|1.4854416167108744|0.0969574665195713|3.94|151.0|10|2|sense L1MC1_dup6797|chr8:67186483-67186959:+|1.4854416167108744|0.0969574665195713|3.94|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 538.8287963867188 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 92.307 1 95.933 95.433 96.433 3.626 0 0 0 0.37476 1 22182 22182 6.7232 0 1 17758 11054 11158 11164 21379 21379 0.1041859526535518 KLEAKMIK 8 Unmodified _KLEAKMIK_ 0 0 0 ENST00000461693.5_1_9:139297242-139299725:-|nuORF;ENST00000326105.6_1_1:175013764-175014370:-|nuORF;nc|ENSG00000165689|Q96C92-4|ENTR1;nc|ENSG00000165689|Q96C92-3|ENTR1;nc|ENSG00000165689|Q96C92-2|ENTR1;ENSG00000165689|ENST00000357365|ENTR1 ENST00000461693.5_1_9:139297242-139299725:-|nuORF ENST00000461693.5_1_9:139297242-139299725:-|nuORF MSMS UPN48_class_I_Rep_1 5 480.8007507324219 2 480.799163 959.583773 NaN NaN NaN NaN NaN NaN NaN 108.22 1 111.85 111.35 112.35 3.6313 0 0 0 0.39996 1 26167 26167 7.9102 0 1 17759 4199 11159 11165 21380 21380 0.1023646547325825 KLEAPLPQL 9 Unmodified _KLEAPLPQL_ 0 0 0 REV__ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|3|intron REV__ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|3|intron MSMS UPN48_class_I_Rep_1 5 504.8088073730469 2 504.808042 1007.60153 NaN NaN NaN NaN NaN NaN NaN 109.22 1 112.85 112.35 113.35 3.6321 0 0 0 0.37476 1 26514 26514 6.7232 0 1 + 17760 21032 11160 11166 21381 21381 0.09803503999762597 KLEATKILL 9 Unmodified _KLEATKILL_ 0 0 0 L1ME1_dup25913|chr15:66449059-66449598:+|1.8432531517529636|0.0882424333761897|4.38|151.0|10|2|sense L1ME1_dup25913|chr15:66449059-66449598:+|1.8432531517529636|0.0882424333761897|4.38|151.0|10|2|sense L1ME1_dup25913|chr15:66449059-66449598:+|1.8432531517529636|0.0882424333761897|4.38|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.8397827148438 2 514.839342 1027.66413 0.025441 1.3098E-05 -0.091326 -4.7018E-05 -0.065885 -3.392E-05 514.8391749872914 46.796 0.86202 50.491 50.104 50.966 3.6951 85 55 2 0 0 0 0.45441 1 10046 10046 4.897 0 1 149940 17761 12337 11161 11167 21382 21382 0.15140650067951356 KLEDRTRKL 9 Unmodified _KLEDRTRKL_ 0 0 0 L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|13|1|sense L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|13|1|sense L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|13|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 580.1806030273438 2 579.851304 1157.68806 0.46143 0.00026756 2.2304 0.0012933 2.6918 0.0015609 580.3534402314268 75.905 0.047722 79.163 79.137 79.185 3.2573 6 3 2 0 0 0 0.12354 1 18851 18851 3.5965 0 1 358170 17762 9074 11162 11168 21383 21383 0.11551883554329834 KLEDSFRLI 9 Unmodified _KLEDSFRLI_ 0 0 0 REV__L1PA3_dup8571|chr12:59751113-59757266:+|1.0179887969294132|0.0929459597853785|3.45|151.0|37|2|sense REV__L1PA3_dup8571|chr12:59751113-59757266:+|1.0179887969294132|0.0929459597853785|3.45|151.0|37|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 560.3403930664062 2 560.821681 1119.62881 0.49412 0.00027712 -1.9394 -0.0010876 -1.4452 -0.00081052 560.8204956596078 93.806 0.021927 97.576 97.561 97.583 3.77 4 2 2 0 0 0 0.12099 1 22304 22304 6.7232 0 1 31189 + 17763 29575 11163 11169 21384 21384 0.07377987540144204 KLEELQGLILQ 11 Unmodified _KLEELQGLILQ_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MSMS UPN48_class_I_Rep_1 5 642.3807373046875 2 642.382103 1282.74965 0.43623 0.00028023 -0.05555 -3.5684E-05 0.38068 0.00024454 642.3817843832089 107.91 0.20095 111.54 111.47 111.67 3.6313 30 15 3 0 0 0 0.35213 1 26067 26067 11.495 0 1 2022900 + 17764 32049 11164 11170 21385 21385 0.11958770462956636 KLEELQGLILQ 11 Unmodified _KLEELQGLILQ_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 642.382103 1282.74965 0.57913 0.00037202 -0.078412 -5.037E-05 0.50071 0.00032165 642.3818185855682 107.86 0.10625 111.53 111.49 111.59 3.6724 -0.0080207 0.00010199 NaN 11.495 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1252900 + 17765 32049 11164 11170 0.11958770462956636 KLEELQGLILQ 11 Unmodified _KLEELQGLILQ_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 642.382103 1282.74965 0.4999 0.00032113 -0.34092 -0.000219 0.15898 0.00010213 642.381486855471 107.86 0.13288 111.54 111.46 111.59 3.6783 0.0054075 -0.00023527 NaN 11.495 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2130500 + 17766 32049 11164 11170 0.11958770462956636 KLEELQGLILQ 11 Unmodified _KLEELQGLILQ_ 0 0 0 REV__nc|ENSG00000167702|Q96AC6|KIFC2 REV__nc|ENSG00000167702|Q96AC6|KIFC2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 642.382103 1282.74965 0.63861 0.00041023 -0.23571 -0.00015142 0.4029 0.00025881 642.3818238252423 107.86 0.096329 111.54 111.49 111.58 3.6813 0.00033292 -0.00010011 NaN 11.495 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2089600 + 17767 32049 11164 11170 0.11958770462956636 KLEHTAQTY 9 Unmodified _KLEHTAQTY_ 0 0 0 UBR5|p.G1577Vfs*41|1|0.04|ENSG00000104517|chr8:102288250-102288250|C/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.34|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 UBR5|p.G1577Vfs*41|1|0.04|ENSG00000104517|chr8:102288250-102288250|C/-|frameshift_variant UBR5|p.G1577Vfs*41|1|0.04|ENSG00000104517|chr8:102288250-102288250|C/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 545.7798461914062 2 545.780013 1089.54547 0.084972 4.6376E-05 -0.52504 -0.00028655 -0.44006 -0.00024018 545.7796382841062 28.318 0.59059 28.318 28.042 28.633 0 58 43 2 0 0 0 0.31407 1 4348 4348 13.042 13.042 1 90293 17768 1692 11165 11171 21386 21386 0.0042825109228488145 KLEIKTKKIA 10 Unmodified _KLEIKTKKIA_ 0 0 0 L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|19|1|sense;L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|50|2|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|19|1|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|19|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 586.8944702148438 2 586.392273 1170.76999 0.50174 0.00029422 0.38754 0.00022725 0.88928 0.00052146 586.3923588759809 108.27 0.72962 111.9 111.4 112.13 3.6355 153 61 3 0 0 0 0.56078 1 26619 26619 3.2813 0 1 5877200 17769 15433 11166 11172 21387 21387 0.19143985913433426 KLEIKTKKIA 10 Unmodified _KLEIKTKKIA_ 0 0 0 L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|19|1|sense;L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|50|2|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|19|1|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|19|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 586.3927001953125 2 586.392273 1170.76999 0.63485 0.00037227 1.2661 0.00074246 1.901 0.0011147 586.3930289919513 108.08 0.63431 111.61 111.41 112.05 3.5333 109 67 3 0 0 0 0.84575 1 26292 26292 1.3295 0 1 8015900 17770 15433 11166 11172 21388 21388 0.19143985913433426 KLEINNRRNLR 11 Unmodified _KLEINNRRNLR_ 0 0 0 L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|78|3|sense L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|78|3|sense L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|78|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 475.9515075683594 3 475.951419 1424.83243 0.10019 4.7684E-05 0.34468 0.00016405 0.44486 0.00021173 476.28586100347 101.92 0.59781 105.53 105.34 105.94 3.612 124 83 2 0 0 0 0.67462 1 24607 24607 1.0136 0.23704 1 600870 17771 8608 11167 11173 21389 21389 0.13700525034323618 KLEKHIRII 9 Unmodified _KLEKHIRII_ 0 0 0 REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|29|1|sense REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|29|1|sense MSMS UPN48_class_I_Rep_3 7 575.3780517578125 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 108.26 1 111.94 111.44 112.44 3.6813 0 0 0 0.39518 1 25600 25600 1.8442 0 1 + 17772 25064 11168 11174 21390 21390 0.17094252319020597 KLEKLKVIF 9 Unmodified _KLEKLKVIF_ 0 0 0 REV__ENSG00000109917|ENST00000227322|ZPR1 REV__ENSG00000109917|ENST00000227322|ZPR1 MSMS UPN46_class_I_Rep_3 1 559.8175048828125 2 559.37081 1116.72707 NaN NaN NaN NaN NaN NaN NaN 88.939 1 88.939 88.439 89.439 0 0 0 0 0.40098 1 21380 21380 0.45834 0 1 + 17773 18416 11169 11175 21391 21391 0.1733721585596868 KLEKNGIGYH 10 Unmodified _KLEKNGIGYH_ 0 0 0 ENST00000481559.6_1_5:152869375-153085697:+|nuORF;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1 ENST00000481559.6_1_5:152869375-153085697:+|nuORF ENST00000481559.6_1_5:152869375-153085697:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 579.815673828125 2 579.81693 1157.61931 0.16551 9.5968E-05 -0.30479 -0.00017672 -0.13927 -8.0752E-05 579.8167993843434 44.165 0.52112 47.52 47.209 47.73 3.3556 40 28 2 0 0 0 0.55448 1 9195 9195 4.897 0 1 69615 17774 6999 11170 11176 21392 21392 0.0468021925460107 KLEKPFRWI 9 Unmodified _KLEKPFRWI_ 0 0 0 REV__L1PA16_dup12259|chr15:80078052-80078890:-|3.045277433474982|0.0757056172911639|5.33|151.0|15|2|sense REV__L1PA16_dup12259|chr15:80078052-80078890:-|3.045277433474982|0.0757056172911639|5.33|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 406.24359130859375 3 406.244881 1215.71281 NaN NaN NaN NaN NaN NaN NaN 100.27 1 104.03 103.53 104.53 3.7575 0 0 0 0.39887 1 23816 23816 0.96228 0.18574 1 + 17775 29345 11171 11177 21393 21393 0.11358563427711488 KLEKTYRGL 9 Unmodified _KLEKTYRGL_ 0 0 0 REV__L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense REV__L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.3302612304688 2 554.329673 1106.64479 0.48808 0.00027056 0.45056 0.00024976 0.93864 0.00052032 554.3294599450865 110.36 0.11537 113.99 113.95 114.06 3.6326 20 9 5 0 0 0 0.46869 1 26784 26784 3.9444 0.3479 1 924940 + 17776 25766 11172 11178 21394 21394 0.09573693777042536 KLEKTYRGL 9 Unmodified _KLEKTYRGL_ 0 0 0 REV__L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense REV__L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 554.329673 1106.64479 0.39256 0.00021761 -0.15759 -8.736E-05 0.23497 0.00013025 554.3293926484494 110.46 0.10751 114.13 114.12 114.22 3.67 0.067614 -0.00018731 NaN 3.9444 20 11 3 NaN NaN NaN NaN 0 NaN NaN 0 516540 + 17777 25766 11172 11178 0.09573693777042536 KLEKYMKSIL 10 Unmodified _KLEKYMKSIL_ 0 0 0 REV__L1M3_dup1010|chr3:50017588-50017918:-|2.675756297122712|0.0093924779361192|8.15|151.0|9|2|sense REV__L1M3_dup1010|chr3:50017588-50017918:-|2.675756297122712|0.0093924779361192|8.15|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 626.87109375 2 626.870317 1251.72608 NaN NaN NaN NaN NaN NaN NaN 60.335 1 63.733 63.233 64.233 3.3982 0 0 0 0.53105 1 14075 14075 5.7319 0 1 + 17778 24285 11173 11179 21395 21395 0.1102863342478031 KLEKYMKSIL 10 Unmodified _KLEKYMKSIL_ 0 0 0 REV__L1M3_dup1010|chr3:50017588-50017918:-|2.675756297122712|0.0093924779361192|8.15|151.0|9|2|sense REV__L1M3_dup1010|chr3:50017588-50017918:-|2.675756297122712|0.0093924779361192|8.15|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.868896484375 2 626.870317 1251.72608 0.59692 0.00037419 -4.2428 -0.0026597 -3.6459 -0.0022855 626.8692828357215 60.565 0.11588 64.038 63.98 64.096 3.4737 9 6 2 0 0 0 0.54822 1 13412 13412 5.7319 0 1 69575 + 17779 24285 11173 11179 21396 21396 0.1102863342478031 KLEKYMKSIL 10 Unmodified _KLEKYMKSIL_ 0 0 0 REV__L1M3_dup1010|chr3:50017588-50017918:-|2.675756297122712|0.0093924779361192|8.15|151.0|9|2|sense REV__L1M3_dup1010|chr3:50017588-50017918:-|2.675756297122712|0.0093924779361192|8.15|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 626.8703002929688 2 626.870317 1251.72608 NaN NaN NaN NaN NaN NaN NaN 59.83 1 63.347 62.847 63.847 3.5169 0 0 0 0.53105 1 13092 13092 2.9952 0 1 + 17780 24285 11173 11179 21397 21397 0.1102863342478031 KLELFKFWK 9 Unmodified _KLELFKFWK_ 0 0 0 ENST00000439964.1_1_2:64871847-64873778:+|nuORF ENST00000439964.1_1_2:64871847-64873778:+|nuORF ENST00000439964.1_1_2:64871847-64873778:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 619.869384765625 2 619.868434 1237.72232 0.65569 0.00040644 1.1316 0.00070142 1.7873 0.0011079 619.8691297167294 91.812 0.20688 91.812 91.658 91.865 0 22 16 2 0 0 0 0.5015 1 22178 22178 0.45834 0 1 305850 17781 6772 11174 11180 21398 21398 0.11296331713219843 KLELLPLPHT 10 Unmodified _KLELLPLPHT_ 0 0 0 L1M4_dup8201|chr7:128598930-128599880:-|1.4124793606161694|0.0203599819961874|6.12|151.0|27|3|sense L1M4_dup8201|chr7:128598930-128599880:-|1.4124793606161694|0.0203599819961874|6.12|151.0|27|3|sense L1M4_dup8201|chr7:128598930-128599880:-|1.4124793606161694|0.0203599819961874|6.12|151.0|27|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 580.8556518554688 2 580.855524 1159.69649 0.56896 0.00033048 0.45238 0.00026277 1.0213 0.00059325 580.855644355574 60.291 0.22803 63.765 63.693 63.921 3.4737 22 15 2 0 0 0 0.84575 1 13322 13322 3.2813 0.28607 1 91874 17782 8919 11175 11181 21399 21399 0.12303437470950485 KLELQLQRIR 10 Unmodified _KLELQLQRIR_ 0 0 0 REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B MSMS UPN48_class_I_Rep_2 6 648.9076538085938 2 648.909153 1295.80375 NaN NaN NaN NaN NaN NaN NaN 76.892 1 80.504 80.004 81.004 3.6116 0 0 0 0.53105 1 18169 18169 1.4819 0 1 + 17783 18235 11176 11182 21400 21400 0.16768407405174912 KLELWRPLR 9 Unmodified _KLELWRPLR_ 0 0 0 REV__L1MB8_dup12080|chr12:125001735-125002430:-|1.0679929276686797|0.0073707220464547|7.18|151.0|13|2|sense REV__L1MB8_dup12080|chr12:125001735-125002430:-|1.0679929276686797|0.0073707220464547|7.18|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 605.8720703125 2 605.874582 1209.73461 NaN NaN NaN NaN NaN NaN NaN 95.072 1 95.072 94.572 95.572 0 0 0 0 0.39518 1 23070 23070 1.8442 0 1 + 17784 26351 11177 11183 21401 21401 0.13813368176238328 KLELYTKVYS 10 Unmodified _KLELYTKVYS_ 0 0 0 L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|50|1|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|50|1|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_1 5 415.2445373535156 3 415.23594 1242.68599 NaN NaN NaN NaN NaN NaN NaN 96.442 1 100.05 99.554 100.55 3.6124 0 0 0 0.53105 1 23234 23234 1.5923 0 1 17785 11443 11178 11184 21402 21402 0.07435410025868805 KLEMLDNS 8 Unmodified _KLEMLDNS_ 0 0 0 REV__L1P2_dup793|chr8:47751990-47754192:+|1.4040629309706896|0.0181239738949658|6.28|151.0|8|1|sense REV__L1P2_dup793|chr8:47751990-47754192:+|1.4040629309706896|0.0181239738949658|6.28|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 475.2677001953125 2 475.236593 948.458632 NaN NaN NaN NaN NaN NaN NaN 119.79 1 123.21 122.71 123.71 3.4157 0 0 0 0.40625 1 29597 29597 2.3027 0 1 + 17786 28860 11179 11185 21403 21403 -0.017658714538015374 KLENLVAI 8 Unmodified _KLENLVAI_ 0 0 0 REV__L1M1_dup1413|chr3:23314430-23317469:-|2.60036733919628|0.0524239478809924|5.63|151.0|54|2|sense REV__L1M1_dup1413|chr3:23314430-23317469:-|2.60036733919628|0.0524239478809924|5.63|151.0|54|2|sense MSMS UPN48_class_I_Rep_1 5 450.28094482421875 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 54.857 1 58.365 57.865 58.865 3.5082 0 0 0 0.40292 1 11655 11655 6.7232 0 1 + 17787 24013 11180 11186 21404 21404 0.09543545936935516 KLEPARGRD 9 Unmodified _KLEPARGRD_ 0 0 0 MER77B_dup849|chr12:64461676-64462295:-|2.799756446261621|0.0805439146610534|5.12|151.0|26|1|anti-sense MER77B_dup849|chr12:64461676-64462295:-|2.799756446261621|0.0805439146610534|5.12|151.0|26|1|anti-sense MER77B_dup849|chr12:64461676-64462295:-|2.799756446261621|0.0805439146610534|5.12|151.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 521.29443359375 2 521.293622 1040.57269 0.27389 0.00014278 1.7997 0.00093818 2.0736 0.001081 521.2945174188999 107.85 0.21169 111.48 111.42 111.63 3.6313 21 16 2 0 0 0 0.37599 1 26031 26031 9.3831 2.66 1 3750800 17788 16217 11181 11187 21405 21405 0.05402779423343418 KLEPARGRD 9 Unmodified _KLEPARGRD_ 0 0 0 MER77B_dup849|chr12:64461676-64462295:-|2.799756446261621|0.0805439146610534|5.12|151.0|26|1|anti-sense MER77B_dup849|chr12:64461676-64462295:-|2.799756446261621|0.0805439146610534|5.12|151.0|26|1|anti-sense MER77B_dup849|chr12:64461676-64462295:-|2.799756446261621|0.0805439146610534|5.12|151.0|26|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 521.293622 1040.57269 0.41514 0.00021641 1.4164 0.00073838 1.8316 0.00095479 521.2944515296113 107.83 0.11596 111.5 111.48 111.59 3.6724 0.008173 -0.00024153 NaN 9.3831 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1419600 17789 16217 11181 11187 0.05402779423343418 KLEQHEKPS 9 Unmodified _KLEQHEKPS_ 0 0 0 REV__nc|ENSG00000136237|Q92565-2|RAPGEF5 REV__nc|ENSG00000136237|Q92565-2|RAPGEF5 MSMS UPN48_class_I_Rep_2 6 548.2918701171875 2 548.293288 1094.57202 NaN NaN NaN NaN NaN NaN NaN 79.925 1 83.569 83.069 84.069 3.6446 0 0 0 0.37476 1 18996 18996 6.7232 0 1 + 17790 19178 11182 11188 21406 21406 0.028519399836113735 KLERAIARH 9 Unmodified _KLERAIARH_ 0 0 0 nc|ENSG00000153936|Q7LGA3-3|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1 nc|ENSG00000153936|Q7LGA3-3|HS2ST1 nc|ENSG00000153936|Q7LGA3-3|HS2ST1 MSMS UPN47_class_I_Rep_2 3 547.3327026367188 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 84.102 1 87.514 87.014 88.014 3.4116 0 0 0 0.39518 1 20975 20975 1.8442 0 1 17791 3653 11183 11189 21407 21407 0.10899051448268438 KLERFEIPIK 10 Unmodified _KLERFEIPIK_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-SECPEP UPN46_class_I_Rep_3 1 637.3603515625 2 636.887355 1271.76016 0.71552 0.00045571 0.3101 0.0001975 1.0256 0.00065321 636.888145824246 43.142 0.045292 43.142 43.12 43.165 0 4 2 2 0 0 0 0.84575 1 8586 8586 1.1933 0 1 130830 17792 1047 11184 11190 21408 21408 0.13514797908010223 KLERIQRRV 9 Unmodified _KLERIQRRV_ 0 0 0 REV__nc|ENSG00000044459|Q9NXG0|CNTLN REV__nc|ENSG00000044459|Q9NXG0|CNTLN MULTI-MSMS UPN47_class_I_Rep_3 4 599.3798217773438 2 599.380563 1196.74657 0.50877 0.00030495 -0.62496 -0.00037459 -0.11619 -6.9643E-05 599.3802595505995 95.565 0.32413 98.974 98.726 99.051 3.4095 62 44 2 0 0 0 0.48846 1 23737 23737 1.8442 0 1 214340 + 17793 17657 11185 11191 21409 21409 0.15606984919440947 KLERIQRRV 9 Unmodified _KLERIQRRV_ 0 0 0 REV__nc|ENSG00000044459|Q9NXG0|CNTLN REV__nc|ENSG00000044459|Q9NXG0|CNTLN MULTI-MSMS UPN48_class_I_Rep_1 5 599.3803100585938 2 599.380563 1196.74657 0.41423 0.00024828 -0.43784 -0.00026244 -0.023612 -1.4153E-05 599.3802989141963 95.309 0.47835 98.925 98.541 99.019 3.6167 139 59 3 0 0 0 0.46869 1 22889 22889 3.9444 0.3479 1 902450 + 17794 17657 11185 11191 21410 21410 0.15606984919440947 KLERLTFL 8 Unmodified _KLERLTFL_ 0 0 0 REV__Tigger17a_dup809|chr6:42022986-42023613:+|6.360930843572285|0.2503821821195864|4.67|151.0|35|2|anti-sense REV__Tigger17a_dup809|chr6:42022986-42023613:+|6.360930843572285|0.2503821821195864|4.67|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_1 5 510.3034973144531 2 510.316035 1018.61752 NaN NaN NaN NaN NaN NaN NaN 107.93 1 111.56 111.06 112.06 3.6313 0 0 0 0.39819 1 26059 26059 8.5933 0 1 + 17795 32608 11186 11192 21411 21411 0.10895210236640196 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MSMS UPN47_class_I_Rep_2 3 637.3954467773438 2 637.396213 1272.77787 0.63443 0.00040438 -1.9479 -0.0012416 -1.3134 -0.00083719 637.3946578246346 107.93 0.20763 111.46 111.36 111.57 3.5345 28 23 2 0 0 0 0.50947 1 26121 26121 12.241 0 1 1900800 17796 3053 11187 11193 21412 21412 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MSMS UPN48_class_I_Rep_1 5 637.395751953125 2 637.396213 1272.77787 0.43378 0.00027649 -0.57625 -0.0003673 -0.14247 -9.081E-05 637.3956163881448 107.89 0.31636 111.52 111.44 111.76 3.6313 59 27 3 0 0 0 0.53843 1 26033 26033 7.609 1.4032 1 6081200 17797 3053 11187 11193 21413 21413 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MSMS UPN48_class_I_Rep_2 6 637.3956909179688 2 637.396213 1272.77787 0.49824 0.00031758 -1.2986 -0.0008277 -0.80032 -0.00051012 637.3951447651142 107.85 0.12061 111.53 111.47 111.59 3.6783 18 11 2 0 0 0 0.53843 1 25531 25531 11.495 4.7715 1 5652300 17798 3053 11187 11193 21414 21414 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MSMS UPN48_class_I_Rep_3 7 637.8973999023438 2 637.396213 1272.77787 0.627 0.00039964 -1.1257 -0.00071753 -0.49872 -0.00031788 637.3952228586019 107.85 0.12561 111.53 111.46 111.59 3.6813 23 10 3 0 0 0 0.51384 1 25468 25468 11.495 4.7715 1 4412100 17799 3053 11187 11193 21415 21415 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 637.396213 1272.77787 0.57108 0.00036401 -0.79333 -0.00050567 -0.22225 -0.00014166 637.3952853759018 107.86 0.092911 111.53 111.49 111.58 3.6724 -0.022874 0.00018737 NaN 12.241 12 4 3 NaN NaN NaN NaN 0 NaN NaN 0 4228000 17800 3053 11187 11193 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 637.396213 1272.77787 0.43378 0.00027649 -0.57625 -0.0003673 -0.14247 -9.081E-05 637.3956163881448 107.89 0.31636 111.52 111.44 111.76 3.6313 -0.031956 0.0004641 NaN 12.241 59 27 3 NaN NaN NaN NaN 0 NaN NaN 0 6081200 17801 3053 11187 11193 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 637.396213 1272.77787 0.49824 0.00031758 -1.2986 -0.0008277 -0.80032 -0.00051012 637.3951447651142 107.85 0.12061 111.53 111.47 111.59 3.6783 -0.0012783 -7.5594E-05 NaN 11.495 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5652300 17802 3053 11187 11193 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MATCH UPN48_class_I_Rep_2 6 2 637.396213 1272.77787 0.49817 0.00031753 -1.7406 -0.0011094 -1.2424 -0.0007919 637.3952143887847 108.09 0.081169 111.77 111.72 111.8 3.6746 0.21804 -0.0010202 NaN 12.241 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1302000 17803 3053 11187 11193 0.15239557953532312 KLERRGFRVL 10 Unmodified _KLERRGFRVL_ 0 0 0 nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR nc|ENSG00000137880|P30047-2|GCHFR nc|ENSG00000137880|P30047-2|GCHFR MULTI-MATCH UPN48_class_I_Rep_3 7 2 637.396213 1272.77787 0.62668 0.00039944 -1.5036 -0.00095838 -0.8769 -0.00055893 637.3948646370619 107.93 0.06015 111.61 111.6 111.66 3.6813 0.060284 -0.00071806 NaN 12.241 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2284400 17804 3053 11187 11193 0.15239557953532312 KLETLKEK 8 Unmodified _KLETLKEK_ 0 0 0 REV__L1MEf_dup9634|chr15:30674864-30675622:+|1.7573184993336832|0.0105132590524163|7.39|151.0|26|3|sense REV__L1MEf_dup9634|chr15:30674864-30675622:+|1.7573184993336832|0.0105132590524163|7.39|151.0|26|3|sense MSMS UPN48_class_I_Rep_2 6 494.8058776855469 2 494.8055 987.596446 NaN NaN NaN NaN NaN NaN NaN 33.432 1 37.092 36.592 37.592 3.6607 0 0 0 0.40527 1 5275 5275 3.5965 0 1 + 17805 27367 11188 11194 21416 21416 0.10215200137133706 KLETPRPHR 9 Unmodified _KLETPRPHR_ 0 0 0 REV__MER5A_dup512|chr1:44503730-44503851:+|1.9217892486854469|0.0017618238774484|10.09|150.0|3|2|sense REV__MER5A_dup512|chr1:44503730-44503851:+|1.9217892486854469|0.0017618238774484|10.09|150.0|3|2|sense MSMS UPN47_class_I_Rep_1 2 567.3308715820312 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 85.298 1 88.889 88.389 89.389 3.5914 0 0 0 0.3967 1 21301 21301 1.4819 0.79152 1 + 17806 31474 11189 11195 21417 21417 0.08550747585650242 KLETTIRSK 9 Unmodified _KLETTIRSK_ 0 0 0 L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 538.3273315429688 2 538.327131 1074.63971 0.56247 0.00030279 -0.13347 -7.1852E-05 0.429 0.00023094 538.326947968429 92.051 0.9038 95.516 95.22 96.124 3.4652 394 130 4 0 0 0 0.43982 1 22760 22760 5.7319 5.7319 1 3381500 17807 14369 11190 11196 21418 21418 0.10537389914429696 KLETTIRSK 9 Unmodified _KLETTIRSK_ 0 0 0 L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 538.327131 1074.63971 0.3564 0.00019186 0.18644 0.00010037 0.54284 0.00029222 538.3270800506282 95.502 0.24323 95.502 95.351 95.594 0 -0.020947 0.00028606 NaN 5.7319 54 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10749000 17808 14369 11190 11196 0.10537389914429696 KLETTIRSK 9 Unmodified _KLETTIRSK_ 0 0 0 L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 538.327131 1074.63971 0.49849 0.00026835 -0.12453 -6.704E-05 0.37396 0.00020131 538.3269555373622 92.044 0.97793 95.754 95.395 96.373 3.7099 0.23129 -4.8751E-05 NaN 5.7319 387 133 4 NaN NaN NaN NaN 0 NaN NaN 0 3198600 17809 14369 11190 11196 0.10537389914429696 KLETTIRSK 9 Unmodified _KLETTIRSK_ 0 0 0 L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 538.327131 1074.63971 0.47809 0.00025737 -0.0031134 -1.676E-06 0.47498 0.00025569 538.3270243357117 92.097 1.304 95.5 95.216 96.52 3.4034 -0.023056 8.1977E-05 NaN 5.7319 460 185 4 NaN NaN NaN NaN 0 NaN NaN 0 3504000 17810 14369 11190 11196 0.10537389914429696 KLETTIRSK 9 Unmodified _KLETTIRSK_ 0 0 0 L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 538.327131 1074.63971 0.4635 0.00024952 -0.34377 -0.00018506 0.11974 6.4458E-05 538.3269219231111 91.502 0.14427 95.257 95.135 95.279 3.7554 -0.26594 -0.00028479 NaN 5.7319 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2680300 17811 14369 11190 11196 0.10537389914429696 KLETTIRSK 9 Unmodified _KLETTIRSK_ 0 0 0 L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|101|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 538.327131 1074.63971 0.57917 0.00031178 -0.060095 -3.2351E-05 0.51908 0.00027943 538.3270076078902 91.745 1.1841 95.609 95.243 96.427 3.8634 0.085624 2.0628E-05 NaN 5.7319 490 167 5 NaN NaN NaN NaN 0 NaN NaN 0 10291000 17812 14369 11190 11196 0.10537389914429696 KLEWKNTPV 9 Unmodified _KLEWKNTPV_ 0 0 0 REV__L1PA7_dup4111|chr5:34085605-34086452:+|2.200459501314173|0.0318265370091222|6.11|151.0|25|3|sense REV__L1PA7_dup4111|chr5:34085605-34086452:+|2.200459501314173|0.0318265370091222|6.11|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 557.8145751953125 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 100.09 1 103.85 103.35 104.35 3.7575 0 0 0 0.38784 1 23779 23779 3.5965 0 1 + 17813 30092 11191 11197 21419 21419 0.06598004885677256 KLEYDTGDGS 10 Unmodified _KLEYDTGDGS_ 0 0 0 REV__ENSG00000225830|ENST00000355832|ERCC6 REV__ENSG00000225830|ENST00000355832|ERCC6 MSMS UPN47_class_I_Rep_3 4 542.7442626953125 2 542.743293 1083.47203 NaN NaN NaN NaN NaN NaN NaN 21.344 1 24.694 24.194 25.194 3.3496 0 0 0 0.53105 1 2371 2371 1.3295 0.13619 1 + 17814 21291 11192 11198 21420 21420 -0.0663634214083686 KLFAPAAR 8 Unmodified _KLFAPAAR_ 0 0 0 REV__nc|ENSG00000134769|Q9Y4J8-6|DTNA REV__nc|ENSG00000134769|Q9Y4J8-6|DTNA MSMS UPN48_class_I_Rep_3 7 437.2673645019531 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 49.895 1 53.516 53.016 54.016 3.621 0 0 0 0.40625 1 10065 10065 2.3027 0 1 + 17815 19109 11193 11199 21421 21421 0.08186116205160943 KLFEDELTL 9 Unmodified _KLFEDELTL_ 0 0 0 ENST00000597330.1_1_19:58556424-58557021:+|nuORF;ENSG00000168924|ENST00000302787|LETM1 ENST00000597330.1_1_19:58556424-58557021:+|nuORF ENST00000597330.1_1_19:58556424-58557021:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 554.3007202148438 2 554.300247 1106.58594 0.38132 0.00021137 0.2202 0.00012206 0.60152 0.00033342 554.3001973756325 65.457 0.56936 68.813 68.405 68.975 3.3557 42 33 2 0 0 0 0.39745 1 15568 15568 8.1555 0.24537 1 77062 17816 4396 11194 11200 21422 21422 0.036911726920379806 KLFEDELTL 9 Unmodified _KLFEDELTL_ 0 0 0 ENST00000597330.1_1_19:58556424-58557021:+|nuORF;ENSG00000168924|ENST00000302787|LETM1 ENST00000597330.1_1_19:58556424-58557021:+|nuORF ENST00000597330.1_1_19:58556424-58557021:+|nuORF MSMS UPN47_class_I_Rep_3 4 554.300048828125 2 554.300247 1106.58594 NaN NaN NaN NaN NaN NaN NaN 65.91 1 69.095 68.595 69.595 3.1853 0 0 0 0.37692 1 15861 15861 6.2058 0 1 17817 4396 11194 11200 21423 21423 0.036911726920379806 KLFEGENEHL 10 Unmodified _KLFEGENEHL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN47_class_I_Rep_1 2 406.206298828125 3 405.87166 1214.59315 -0.44504 -0.00018063 0.019384 7.8675E-06 -0.42565 -0.00017276 406.2061105183088 37.16 0.37765 40.829 40.68 41.057 3.6692 39 28 2 0 0 0 0.56317 1 7018 7018 1.5923 0.89462 1 89616 17818 3407 11195 11201 21424 21424 -0.005560947075309741 KLFEGENEHL 10 Unmodified _KLFEGENEHL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MATCH UPN47_class_I_Rep_3 4 3 405.87166 1214.59315 -1.1846 -0.00048078 0.61302 0.00024881 -0.57153 -0.00023197 405.8717434427016 37.747 0.25293 40.989 40.864 41.117 3.2414 0.079817 0.0004932 NaN 1.5923 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 57990 17819 3407 11195 11201 -0.005560947075309741 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(79)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN46_class_I_Rep_3 1 526.3150634765625 2 526.314646 1050.61474 0.31041 0.00016338 -0.11812 -6.2171E-05 0.19229 0.0001012 526.3146052782994 78.345 0.15613 78.345 78.273 78.429 0 27 18 2 0 0 0 0.0054033 1 18343 18343 78.728 13.493 1 187080 17820 957 11196 11202 21425 21425 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(79)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN47_class_I_Rep_1 2 526.3146362304688 2 526.314646 1050.61474 0.30017 0.00015798 -0.17515 -9.2183E-05 0.12502 6.5802E-05 526.3144585317642 70.526 0.47289 73.898 73.572 74.045 3.3713 101 46 3 0 0 0 0.0054033 2 17174 17137;17174 78.728 13.493 1 619400 17821 957 11196 11202 21426;21427 21427 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(54)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN47_class_I_Rep_1 2 526.3145751953125 2 526.314646 1050.61474 0.30537 0.00016072 -0.10397 -5.4721E-05 0.2014 0.000106 526.3145141843029 71.321 0.76913 74.696 74.348 75.117 3.3751 155 65 3 0 0 0 0.037922 1 17381 17381 53.833 11.993 1 455630 17822 957 11196 11202 21428 21428 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(89)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MSMS UPN47_class_I_Rep_1 2 526.314697265625 2 526.314646 1050.61474 NaN NaN NaN NaN NaN NaN NaN 70.754 1 74.125 73.625 74.625 3.3713 0 0 0 4.3129E-13 1 17213 17213 88.954 23.719 1 17823 957 11196 11202 21429 21429 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(86)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MSMS UPN47_class_I_Rep_1 2 526.3146362304688 2 526.314646 1050.61474 NaN NaN NaN NaN NaN NaN NaN 70.884 1 74.255 73.755 74.755 3.3713 0 0 0 3.4797E-12 1 17251 17251 85.642 20.406 1 17824 957 11196 11202 21430 21430 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(69)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MSMS UPN47_class_I_Rep_1 2 526.3145751953125 2 526.314646 1050.61474 NaN NaN NaN NaN NaN NaN NaN 71.063 1 74.438 73.938 74.938 3.3751 0 0 0 1.8077E-06 1 17305 17305 69.105 12.928 1 17825 957 11196 11202 21431 21431 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(79)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN47_class_I_Rep_2 3 526.3146362304688 2 526.314646 1050.61474 0.09707 5.1089E-05 0.077682 4.0885E-05 0.17475 9.1974E-05 526.3146032040952 71.233 1.5443 74.523 73.86 75.405 3.2899 348 140 3 0 0 0 0.0054033 6 17308 17308;17346;17385;17424;17461;17579 78.728 13.493 1 760590 17826 957 11196 11202 21432;21433;21434;21435;21436;21437 21432 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(79)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN47_class_I_Rep_3 4 526.3147583007812 2 526.314646 1050.61474 0.36137 0.00019019 -0.22623 -0.00011907 0.13514 7.1124E-05 526.3144448245716 71.554 1.3724 74.773 73.84 75.212 3.2188 236 114 3 0 0 0 0.0054033 9 17518 17373;17412;17446;17482;17518;17554;17592;17634;17672 78.728 13.493 1 783510 17827 957 11196 11202 21438;21439;21440;21441;21442;21443;21444;21445;21446 21442 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(56)IITI 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN47_class_I_Rep_3 4 526.3150024414062 2 526.314646 1050.61474 0.36321 0.00019116 0.037425 1.9697E-05 0.40063 0.00021086 526.3145705427847 72.072 0.57118 75.291 75.203 75.775 3.2188 122 48 3 0 0 0 0.032038 1 17707 17707 56.177 6.244 1 354540 17828 957 11196 11202 21447 21447 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.314646 1050.61474 0.34255 0.00018029 -0.059273 -3.1196E-05 0.28328 0.00014909 526.815265765931 71.711 0.058899 75.177 75.14 75.198 3.466 -0.14688 -0.00011817 NaN 56.177 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 36528 17829 957 11196 11202 22 0.09145618787465537 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ 0 0 1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.314646 1050.61474 0.39165 0.00020613 -0.64943 -0.0003418 -0.25778 -0.00013567 526.3147303580771 71.423 0.047104 74.973 74.937 74.984 3.5505 0.2319 -0.00058105 NaN 78.728 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48343 17830 957 11196 11202 22 0.09145618787465537 KLFIGGLSF 9 Unmodified _KLFIGGLSF_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|151|163.03|0.0|23.96|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000170144|ENST00000392524|HNRNPA3 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN46_class_I_Rep_3 1 491.2922058105469 2 491.292028 980.569503 0.28305 0.00013906 -0.088987 -4.3719E-05 0.19406 9.534E-05 491.2919399523354 80.728 0.40878 80.728 80.692 81.101 0 85 41 3 0 0 0 0.006979 3 19084 19047;19084;19112 118.89 40.745 1 3379000 17831 2393 11197 11203 21448;21449;21450 21449 0.07844136316634831 KLFIGGLSF 9 Unmodified _KLFIGGLSF_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|151|163.03|0.0|23.96|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000170144|ENST00000392524|HNRNPA3 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN46_class_I_Rep_3 1 491.79217529296875 2 491.292028 980.569503 0.28454 0.00013979 1.5794 0.00077594 1.8639 0.00091573 491.29182798153965 81.125 0.070312 81.125 81.101 81.171 0 9 5 3 0 0 0 0.10568 1 19144 19144 32.786 5.1569 1 337310 17832 2393 11197 11203 21451 21451 0.07844136316634831 KLFIGGLSF 9 Unmodified _KLFIGGLSF_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|151|163.03|0.0|23.96|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000170144|ENST00000392524|HNRNPA3 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MSMS UPN46_class_I_Rep_3 1 491.2922058105469 2 491.292028 980.569503 NaN NaN NaN NaN NaN NaN NaN 80.527 1 80.527 80.027 81.027 0 0 0 0 0.085573 1 18975 18975 27.629 3.6082 1 17833 2393 11197 11203 21452 21452 0.07844136316634831 KLFIGGLSF 9 Unmodified _KLFIGGLSF_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|151|163.03|0.0|23.96|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000170144|ENST00000392524|HNRNPA3 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MSMS UPN46_class_I_Rep_3 1 491.2920837402344 2 491.292028 980.569503 NaN NaN NaN NaN NaN NaN NaN 80.663 1 80.663 80.163 81.163 0 0 0 0 0.027878 1 19012 19012 47.749 5.9091 1 17834 2393 11197 11203 21453 21453 0.07844136316634831 KLFLLSQSSLY 11 Unmodified _KLFLLSQSSLY_ 0 0 0 REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 433.20318603515625 3 433.583339 1297.72819 0.037138 1.6103E-05 -3.752 -0.0016268 -3.7148 -0.0016107 433.58191487179766 41.36 0.084663 45.111 45.076 45.161 3.7509 11 8 2 0 0 0 22.551 1 7552 7552 2.4348 0.18206 1 65263 + 17835 22103 11198 11204 21454 21454 0.09123385434259035 KLFLLSQSSLY 11 Unmodified _KLFLLSQSSLY_ 0 0 0 REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 433.583339 1297.72819 -0.045158 -1.958E-05 -4.2264 -0.0018325 -4.2715 -0.0018521 433.9154594196998 41.709 0.04948 45.215 45.185 45.235 3.506 0.052005 -0.00023822 NaN 2.4348 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48380 + 17836 22103 11198 11204 0.09123385434259035 KLFNEEYDF 9 Unmodified _KLFNEEYDF_ 0 0 0 ENST00000557186.5_1_14:102606326-102662237:+|nuORF ENST00000557186.5_1_14:102606326-102662237:+|nuORF ENST00000557186.5_1_14:102606326-102662237:+|nuORF MSMS UPN48_class_I_Rep_3 7 602.7833862304688 2 602.779679 1203.5448 NaN NaN NaN NaN NaN NaN NaN 68.581 1 72.09 71.59 72.59 3.5094 0 0 0 0.37891 1 15734 15734 5.7319 0 1 17837 7436 11199 11205 21455 21455 -0.04882588347436467 KLFNHLRHKS 10 Unmodified _KLFNHLRHKS_ 0 0 0 REV__L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|25|2|sense REV__L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|25|2|sense MSMS UPN48_class_I_Rep_3 7 640.375 2 640.372738 1278.73092 NaN NaN NaN NaN NaN NaN NaN 62.505 1 66.016 65.516 66.516 3.5104 0 0 0 0.53105 1 13898 13898 1.3295 0.13619 1 + 17838 26515 11200 11206 21456 21456 0.10270698402405287 KLFNNRNR 8 Unmodified _KLFNNRNR_ 0 0 0 REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|31|1|sense REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|31|1|sense MSMS UPN46_class_I_Rep_3 1 531.3014526367188 2 531.301781 1060.58901 NaN NaN NaN NaN NaN NaN NaN 111.36 1 111.36 110.86 111.86 0 0 0 0 0.40746 1 27453 27453 0.69038 0 1 + 17839 25568 11201 11207 21457 21457 0.06113905380061624 KLFQGQLVL 9 Unmodified _KLFQGQLVL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS UPN47_class_I_Rep_1 2 523.3239135742188 2 523.32386 1044.63317 0.30996 0.00016221 -0.15485 -8.1036E-05 0.15511 8.1171E-05 523.3236581109413 62.7 0.8429 66.06 65.689 66.532 3.3595 121 55 3 0 0 0 0.10817 3 14751 14751;14793;14834 32.305 11.852 1 253730 17840 3944 11202 11208 21458;21459;21460 21458 0.1126349675369056 KLFQGQLVL 9 Unmodified _KLFQGQLVL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS UPN47_class_I_Rep_2 3 523.3235473632812 2 523.32386 1044.63317 0.016094 8.4225E-06 0.10972 5.7421E-05 0.12582 6.5843E-05 523.3237384260852 63.119 0.84171 66.374 65.925 66.767 3.2558 111 56 3 0 0 0 0.20276 1 14967 14967 20.454 4.6064 1 166170 17841 3944 11202 11208 21461 21461 0.1126349675369056 KLFQGQLVL 9 Unmodified _KLFQGQLVL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MSMS UPN47_class_I_Rep_3 4 523.3236694335938 2 523.32386 1044.63317 NaN NaN NaN NaN NaN NaN NaN 63.372 1 66.542 66.042 67.042 3.1698 0 0 0 0.28335 1 15087 15087 11.64 0 1 17842 3944 11202 11208 21462 21462 0.1126349675369056 KLFRWFHL 8 Unmodified _KLFRWFHL_ 0 0 0 REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2 REV__nc|ENSG00000169402|B2RC85-2|RSPH10B2 MSMS UPN47_class_I_Rep_1 2 573.832275390625 2 573.832186 1145.64982 NaN NaN NaN NaN NaN NaN NaN 40.077 1 43.744 43.244 44.244 3.6668 0 0 0 0.40746 1 7908 7908 0.69038 0 1 + 17843 19755 11203 11209 21463 21463 0.082820424303236 KLFSFKIIHL 10 Unmodified _KLFSFKIIHL_ 0 0 0 REV__L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|59|3|anti-sense REV__L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|59|3|anti-sense MSMS UPN47_class_I_Rep_3 4 623.3895874023438 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 104.74 1 108.27 107.77 108.77 3.5308 0 0 0 0.53105 1 25667 25667 1.4819 0 1 + 17844 26216 11204 11210 21464 21464 0.15192307121606063 KLFSNKKEN 9 Unmodified _KLFSNKKEN_ 0 0 0 L1ME1_dup21248|chr11:73102882-73103258:+|1.197781481747733|0.0024296309403199|8.95|149.0|1|1|sense L1ME1_dup21248|chr11:73102882-73103258:+|1.197781481747733|0.0024296309403199|8.95|149.0|1|1|sense L1ME1_dup21248|chr11:73102882-73103258:+|1.197781481747733|0.0024296309403199|8.95|149.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.3124389648438 2 554.31148 1106.60841 0.52382 0.00029036 1.7644 0.00097805 2.2883 0.0012684 554.312394320674 38.236 0.093399 41.741 41.704 41.798 3.5052 9 5 2 0 0 0 0.49026 1 6604 6604 1.6526 0 1 50256 17845 12295 11205 11211 21465 21465 0.05936816880330298 KLFSNKKEN 9 Unmodified _KLFSNKKEN_ 0 0 0 L1ME1_dup21248|chr11:73102882-73103258:+|1.197781481747733|0.0024296309403199|8.95|149.0|1|1|sense L1ME1_dup21248|chr11:73102882-73103258:+|1.197781481747733|0.0024296309403199|8.95|149.0|1|1|sense L1ME1_dup21248|chr11:73102882-73103258:+|1.197781481747733|0.0024296309403199|8.95|149.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 554.3123168945312 2 554.31148 1106.60841 NaN NaN NaN NaN NaN NaN NaN 38.442 1 42.101 41.601 42.601 3.6595 0 0 0 0.38639 1 6606 6606 3.9444 0 1 17846 12295 11205 11211 21466 21466 0.05936816880330298 KLGAATRR 8 Unmodified _KLGAATRR_ 0 0 0 REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|13|2|sense REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 436.7751159667969 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 108.34 1 111.98 111.48 112.48 3.6355 0 0 0 0.4044 1 26610 26610 4.756 2.4533 1 + 17847 28330 11206 11212 21467 21467 0.0942773294835888 KLGAATRR 8 Unmodified _KLGAATRR_ 0 0 0 REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|13|2|sense REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.7747802734375 2 436.774868 871.535184 -0.025517 -1.1145E-05 -0.023229 -1.0146E-05 -0.048746 -2.1291E-05 436.7748419421004 81.636 0.97749 85.212 84.774 85.751 3.5753 415 118 5 0 0 0 0.82752 2 19562 19562;19596 2.3027 0 1 9700200 + 17848 28330 11206 11212 21468;21469 21468 0.0942773294835888 KLGAATRR 8 Unmodified _KLGAATRR_ 0 0 0 REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|13|2|sense REV__L1ME5_dup2864|chr17:63708912-63709829:-|2.7440371618496275|0.3222663572400732|3.09|151.0|13|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 436.774868 871.535184 0.15091 6.5913E-05 -0.28324 -0.00012371 -0.13233 -5.7797E-05 436.7746568187431 85.479 0.16217 85.479 85.444 85.606 0 0.13354 -0.00021945 NaN 2.3027 54 19 4 NaN NaN NaN NaN 0 NaN NaN 0 1888100 + 17849 28330 11206 11212 0.0942773294835888 KLGAKHSA 8 Unmodified _KLGAKHSA_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MSMS UPN48_class_I_Rep_1 5 406.2486572265625 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 99.988 1 103.6 103.1 104.1 3.6084 0 0 0 0.40404 1 24146 24146 5.2307 0.47466 1 + 17850 19652 11207 11213 21470 21470 0.058369527914123864 KLGFTVTV 8 Unmodified _KLGFTVTV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-SECPEP UPN47_class_I_Rep_3 4 432.8851623535156 2 432.763104 863.511654 -0.41988 -0.00018171 0.20536 8.8873E-05 -0.21452 -9.2834E-05 432.76312551282086 54.061 0.77114 57.246 56.996 57.767 3.1856 84 50 2 0 0 0 0.72333 1 12346 12346 6.7232 0 1 144900 17851 2874 11208 11214 21471 21471 0.07443874391196914 KLGHKPIAP 9 Unmodified _KLGHKPIAP_ 0 0 0 REV__ENST00000454416.1_1_2:232258497-232259415:+|nuORF REV__ENST00000454416.1_1_2:232258497-232259415:+|nuORF MSMS UPN48_class_I_Rep_1 5 480.8008728027344 2 480.803094 959.591636 NaN NaN NaN NaN NaN NaN NaN 86.638 1 90.251 89.751 90.751 3.613 0 0 0 0.38299 1 20759 20759 4.756 0 1 + 17852 22213 11209 11215 21472 21472 0.11022360785023011 KLGKRVEGP 9 Unmodified _KLGKRVEGP_ 0 0 0 REV__L1MEd_dup21089|chr22:30910051-30911316:+|1.0872794696292167|0.2257689027491142|2.27|150.0|5|1|sense REV__L1MEd_dup21089|chr22:30910051-30911316:+|1.0872794696292167|0.2257689027491142|2.27|150.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 492.3016357421875 2 492.303458 982.592364 NaN NaN NaN NaN NaN NaN NaN 50.128 1 53.354 52.854 53.854 3.2262 0 0 0 0.38639 1 11047 11047 3.9444 0 1 + 17853 28565 11210 11216 21473 21473 0.10037155434088163 KLGRKMWY 8 Unmodified _KLGRKMWY_ 0 0 0 L1MA7_dup6663|chr13:36955737-36956648:+|1.0201195943327137|0.3074944821797896|1.73|150.0|19|2|sense L1MA7_dup6663|chr13:36955737-36956648:+|1.0201195943327137|0.3074944821797896|1.73|150.0|19|2|sense L1MA7_dup6663|chr13:36955737-36956648:+|1.0201195943327137|0.3074944821797896|1.73|150.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 541.3016967773438 2 541.302404 1080.59026 NaN NaN NaN NaN NaN NaN NaN 79.162 1 79.162 78.662 79.662 0 0 0 0 0.40404 1 18580 18580 5.2307 0 1 17854 10029 11211 11217 21474 21474 0.05318403424621465 KLGSLGMKF 9 Unmodified _KLGSLGMKF_ 0 0 0 REV__MLT1D_dup15346|chr13:50086743-50087240:+|4.436983603149965|0.0510201947614022|6.44|151.0|32|2|anti-sense REV__MLT1D_dup15346|chr13:50086743-50087240:+|4.436983603149965|0.0510201947614022|6.44|151.0|32|2|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7811279296875 2 490.783513 979.552473 NaN NaN NaN NaN NaN NaN NaN 30.65 1 34.395 33.895 34.895 3.7449 0 0 0 0.38478 1 5038 5038 4.3292 1.7518 1 + 17855 31669 11212 11218 21475 21475 0.061878924391749024 KLHCPRAR 8 Unmodified _KLHCPRAR_ 0 0 0 REV__AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|4|1|sense REV__AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 491.209228515625 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 118.59 1 118.59 118.09 119.09 0 0 0 0 0.40746 1 29441 29441 0.69038 0 1 + 17856 16949 11213 11219 21476 21476 0.05919481824855666 KLHCPRAR 8 Unmodified _KLHCPRAR_ 0 0 0 REV__AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|4|1|sense REV__AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 490.7808837890625 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 20.788 1 24.432 23.932 24.932 3.6436 0 0 0 0.40746 1 2150 2150 0.69038 0 1 + 17857 16949 11213 11219 21477 21477 0.05919481824855666 KLHEKDPL 8 Unmodified _KLHEKDPL_ 0 0 0 REV__L1MC1_dup8682|chr10:63507664-63510007:-|3.865095307413728|0.0449743571010058|6.43|151.0|9|1|sense REV__L1MC1_dup8682|chr10:63507664-63510007:-|3.865095307413728|0.0449743571010058|6.43|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 489.8061218261719 2 490.282192 978.549831 -0.15443 -7.5715E-05 -0.42245 -0.00020712 -0.57688 -0.00028283 490.28210587639427 21.513 0.25987 21.513 21.392 21.652 0 40 30 2 0 0 0 0.72333 1 2393 2393 0.6015 0 1 43969 + 17858 26608 11214 11220 21478 21478 0.059697603058339155 KLHFCSFLL 9 Unmodified _KLHFCSFLL_ 0 0 0 Tigger1_dup12040|chr22:42236720-42238835:-|1.816684674273148|0.0592468615635602|4.94|151.0|118|2|anti-sense Tigger1_dup12040|chr22:42236720-42238835:-|1.816684674273148|0.0592468615635602|4.94|151.0|118|2|anti-sense Tigger1_dup12040|chr22:42236720-42238835:-|1.816684674273148|0.0592468615635602|4.94|151.0|118|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.3051147460938 2 554.304613 1106.59467 0.043021 2.3847E-05 1.7772 0.00098511 1.8202 0.001009 554.3054636533373 38.768 0.65108 42.146 41.933 42.585 3.3785 74 42 2 0 0 0 0.35081 1 7601 7601 10.824 1.4408 1 110040 17859 33030 11215 11221 21479 21479 0.0456386784753704 KLHFLSFCI 9 Unmodified _KLHFLSFCI_ 0 0 0 REV__L1MD1_dup5907|chr17:8926938-8927622:+|1.6088152713592898|0.0135155529629295|6.9|151.0|19|3|sense REV__L1MD1_dup5907|chr17:8926938-8927622:+|1.6088152713592898|0.0135155529629295|6.9|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.3046875 2 554.304613 1106.59467 0.043021 2.3847E-05 1.7772 0.00098511 1.8202 0.001009 554.3054636533373 38.768 0.65108 42.146 41.933 42.585 3.3785 74 42 2 0 0 0 0.28552 1 7548 7548 14.838 0 1 110040 + 17860 27364 11216 11222 21480 21480 0.0456386784753704 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4 nc|ENSG00000173933|Q9BWF3-3|RBM4 nc|ENSG00000173933|Q9BWF3-3|RBM4 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2958068847656 2 497.295633 992.576714 -0.26014 -0.00012937 0.34528 0.00017171 0.085145 4.2342E-05 497.2956826656508 35.881 0.78147 39.557 39.072 39.854 3.6762 83 53 2 0 0 0 0.16559 5 6619 6535;6549;6574;6619;6682 24.021 5.7505 1 150330 17861 4655 11217 11223 21481;21482;21483;21484;21485 21484 0.0801286891704649 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4 nc|ENSG00000173933|Q9BWF3-3|RBM4 nc|ENSG00000173933|Q9BWF3-3|RBM4 MULTI-MSMS UPN47_class_I_Rep_2 3 497.29547119140625 2 497.295633 992.576714 -0.15369 -7.6431E-05 0.01861 9.2546E-06 -0.13508 -6.7176E-05 497.2955735550397 36.096 0.68279 39.507 39.164 39.847 3.4114 92 49 2 0 0 0 0.16559 4 6709 6709;6750;6792;6817 24.021 4.7636 1 176250 17862 4655 11217 11223 21486;21487;21488;21489 21486 0.0801286891704649 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4 nc|ENSG00000173933|Q9BWF3-3|RBM4 nc|ENSG00000173933|Q9BWF3-3|RBM4 MULTI-MSMS UPN47_class_I_Rep_3 4 497.2958068847656 2 497.295633 992.576714 -0.31026 -0.00015429 0.27808 0.00013829 -0.032184 -1.6005E-05 497.2956796414261 36.251 0.80763 39.505 39.24 40.047 3.2547 97 51 2 0 0 0 0.097406 5 6811 6769;6811;6852;6891;6941 34.402 10.381 1 129950 17863 4655 11217 11223 21490;21491;21492;21493;21494 21491 0.0801286891704649 KLHHLPLL 8 Unmodified _KLHHLPLL_ 0 0 0 REV__ENST00000412997.5_1_3:20212682-20215785:-|nuORF REV__ENST00000412997.5_1_3:20212682-20215785:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.8004150390625 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 51.89 1 55.223 54.723 55.723 3.3332 0 0 0 0.40581 1 11533 11533 2.8892 0 1 + 17864 22197 11218 11224 21495 21495 0.12634951164716313 KLHHLPLL 8 Unmodified _KLHHLPLL_ 0 0 0 REV__ENST00000412997.5_1_3:20212682-20215785:-|nuORF REV__ENST00000412997.5_1_3:20212682-20215785:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.8114318847656 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 52.011 1 55.344 54.844 55.844 3.3332 0 0 0 0.40738 1 11570 11570 0.79363 0 1 + 17865 22197 11218 11224 21496 21496 0.12634951164716313 KLHIMPRHILV 11 Unmodified _KLHIMPRHILV_ 0 0 0 REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.948486328125 3 452.94807 1355.82238 0.18662 8.4527E-05 0.55432 0.00025108 0.74094 0.00033561 452.94832703574315 103.01 0.046356 106.79 106.77 106.81 3.7788 7 5 2 0 0 0 0.68478 1 25343 25343 0.094841 0 1 102400 + 17866 27829 11219 11225 21497 21497 0.15870245775386138 KLHIMPRHILV 11 Unmodified _KLHIMPRHILV_ 0 0 0 REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 452.94807 1355.82238 0.19269 8.728E-05 0.65692 0.00029755 0.84961 0.00038483 452.948477396023 107.03 0.022331 107.03 107.01 107.04 0 0.2719 0.00011529 NaN 0.094841 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 38150 + 17867 27829 11219 11225 0.15870245775386138 KLHIMPRHILV 11 Unmodified _KLHIMPRHILV_ 0 0 0 REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 452.94807 1355.82238 0.061062 2.7658E-05 0.26245 0.00011888 0.32351 0.00014653 452.9480491635837 103.18 0.051987 106.71 106.67 106.72 3.5231 -0.055681 -0.00042073 NaN 0.094841 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 124400 + 17868 27829 11219 11225 0.15870245775386138 KLHIMPRHILV 11 Unmodified _KLHIMPRHILV_ 0 0 0 REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 452.94807 1355.82238 0.015593 7.0628E-06 0.68134 0.00030861 0.69694 0.00031568 453.2827221784974 103.03 0.036667 106.65 106.63 106.67 3.6164 -0.11097 0.00014848 NaN 0.094841 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 55805 + 17869 27829 11219 11225 0.15870245775386138 KLHIMPRHILV 11 Unmodified _KLHIMPRHILV_ 0 0 0 REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense REV__L1ME2_dup1233|chr2:28303162-28303872:-|1.707588468195792|0.0928984909457031|4.2|151.0|41|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 452.94807 1355.82238 0.17058 7.7265E-05 0.70213 0.00031803 0.87271 0.00039529 452.9482619304313 102.85 0.10162 106.63 106.58 106.69 3.776 -0.1298 0.00017672 NaN 0.094841 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 160960 + 17870 27829 11219 11225 0.15870245775386138 KLHKALVKL 9 Unmodified _KLHKALVKL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MSMS UPN47_class_I_Rep_3 4 525.3633422851562 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 70.64 1 73.852 73.352 74.352 3.2113 0 0 0 0.4007 1 17292 17292 0.52476 0 1 17871 2368 11220 11226 21498 21498 0.18967768778634309 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MSMS UPN46_class_I_Rep_3 1 452.77813720703125 2 452.777411 903.540269 0.19273 8.7265E-05 -0.23172 -0.00010492 -0.038988 -1.7653E-05 452.77723722990174 107.93 0.34921 107.93 107.87 108.22 0 53 25 4 0 0 0 0.82752 1 26328 26328 5.2307 0 1 128010000 17872 4936 11221 11227 21499 21499 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MSMS UPN47_class_I_Rep_1 2 452.77734375 2 452.777411 903.540269 0.18658 8.4481E-05 0.080293 3.6355E-05 0.26688 0.00012084 452.77743884642456 107.77 0.24319 111.44 111.35 111.59 3.6724 60 19 4 0 0 0 0.82752 2 26442 26397;26442 8.5933 8.5933 1 94902000 17873 4936 11221 11227 21500;21501 21501 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MSMS UPN48_class_I_Rep_1 5 452.77740478515625 2 452.777411 903.540269 0.01508 6.8281E-06 0.1946 8.8111E-05 0.20968 9.4939E-05 452.7775081845942 107.75 0.53322 111.38 111.28 111.81 3.6313 134 51 5 0 0 0 0.82752 2 25964 25964;26061 5.2307 0 1 166010000 17874 4936 11221 11227 21502;21503 21502 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MSMS UPN48_class_I_Rep_1 5 452.7774658203125 2 452.777411 903.540269 0.014866 6.7312E-06 0.38302 0.00017342 0.39789 0.00018016 452.7775092427726 110.51 0.09803 114.14 114.12 114.22 3.6326 15 8 3 0 0 0 0.82752 1 26830 26830 5.2307 0 1 1877900 17875 4936 11221 11227 21504 21504 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MATCH UPN47_class_I_Rep_2 3 2 452.777411 903.540269 0.059429 2.6908E-05 1.6467 0.00074558 1.7061 0.00077249 452.77803679862484 110.83 0.11665 114.36 114.31 114.43 3.5271 0.10833 0.00071522 NaN 5.2307 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 311720 17876 4936 11221 11227 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MATCH UPN48_class_I_Rep_2 6 2 452.777411 903.540269 0.15802 7.1549E-05 0.89452 0.00040502 1.0525 0.00047657 452.77788710556706 107.9 0.035278 111.58 111.55 111.59 3.6746 0.11798 0.00060868 NaN 8.5933 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 981110 17877 4936 11221 11227 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MATCH UPN48_class_I_Rep_3 7 2 452.777411 903.540269 0.17061 7.7249E-05 0.72778 0.00032952 0.89839 0.00040677 452.77767142433646 107.75 0.30862 111.43 111.35 111.66 3.6813 -0.026881 0.00045769 NaN 8.5933 82 33 5 NaN NaN NaN NaN 0 NaN NaN 0 171090000 17878 4936 11221 11227 0.08464036810994457 KLHKGGHK 8 Unmodified _KLHKGGHK_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MATCH UPN48_class_I_Rep_3 7 2 452.777411 903.540269 0.17027 7.7094E-05 1.4561 0.00065931 1.6264 0.0007364 452.7780828076622 110.59 0.043289 114.25 114.23 114.28 3.6654 0.00017737 0.00054267 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 187590 17879 4936 11221 11227 0.08464036810994457 KLHSNVRP 8 Unmodified _KLHSNVRP_ 0 0 0 ENST00000539563.5_1_3:115560838-115561395:-|nuORF ENST00000539563.5_1_3:115560838-115561395:-|nuORF ENST00000539563.5_1_3:115560838-115561395:-|nuORF MSMS UPN46_class_I_Rep_3 1 475.40643310546875 2 475.780151 949.545748 NaN NaN NaN NaN NaN NaN NaN 97.903 1 97.903 97.403 98.403 0 0 0 0 0.40625 1 23834 23834 2.3027 0 1 17880 7349 11222 11228 21505 21505 0.06895715602797736 KLHTWIRRRVL 11 Unmodified _KLHTWIRRRVL_ 0 0 0 REV__L1ME2z_dup4452|chr10:132580655-132581840:-|1.38267874612189|0.0201801659448913|6.1|151.0|7|1|sense REV__L1ME2z_dup4452|chr10:132580655-132581840:-|1.38267874612189|0.0201801659448913|6.1|151.0|7|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.3122253417969 3 493.3124 1476.91537 0.26932 0.00013286 -0.36496 -0.00018004 -0.095637 -4.7179E-05 493.31238782321606 45.951 0.43894 45.951 45.79 46.229 0 83 46 2 0 0 0 0.56006 1 9435 9435 6.2344 2.1177 1 245150 + 17881 27926 11223 11229 21506 21506 0.19598886552967087 KLIEIIKKVIL 11 Unmodified _KLIEIIKKVIL_ 0 0 0 REV__L1M5_dup5321|chr2:61199046-61199262:-|1.1297398067453797|0.2534179798613974|2.16|151.0|6|2|sense REV__L1M5_dup5321|chr2:61199046-61199262:-|1.1297398067453797|0.2534179798613974|2.16|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 437.3109130859375 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 79.69 1 83.045 82.545 83.545 3.3554 0 0 0 0.38417 1 19846 19846 0.094841 0 1 + 17882 24697 11224 11230 21507 21507 0.2687456456685595 KLIEIIKKVIL 11 Unmodified _KLIEIIKKVIL_ 0 0 0 REV__L1M5_dup5321|chr2:61199046-61199262:-|1.1297398067453797|0.2534179798613974|2.16|151.0|6|2|sense REV__L1M5_dup5321|chr2:61199046-61199262:-|1.1297398067453797|0.2534179798613974|2.16|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 437.3110046386719 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 63.98 1 67.154 66.654 67.654 3.1741 0 0 0 0.38417 1 15270 15270 0.094841 0 1 + 17883 24697 11224 11230 21508 21508 0.2687456456685595 KLIHHDQRG 9 Unmodified _KLIHHDQRG_ 0 0 0 L1PA6|chr1:41548888-41552216:-|2.0950896140755453|0.3838073139728781|2.45|150.0|16|1|sense L1PA6|chr1:41548888-41552216:-|2.0950896140755453|0.3838073139728781|2.45|150.0|16|1|sense L1PA6|chr1:41548888-41552216:-|2.0950896140755453|0.3838073139728781|2.45|150.0|16|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 552.7628784179688 2 552.307064 1102.59957 -0.44594 -0.00024629 -0.33501 -0.00018503 -0.78094 -0.00043132 552.30702989201 13.057 0.10576 16.43 16.391 16.496 3.3734 15 11 2 0 0 0 0.1249 1 227 227 1.4819 0.28856 1 18207 17884 14682 11225 11231 21509 21509 0.052378880345031575 KLIHKIDHH 9 Unmodified _KLIHKIDHH_ 0 0 0 MLT2C1_dup949|chr6:36455621-36455990:-|1.0975876874808397|0.0323491566361363|5.08|151.0|20|1|anti-sense MLT2C1_dup949|chr6:36455621-36455990:-|1.0975876874808397|0.0323491566361363|5.08|151.0|20|1|anti-sense MLT2C1_dup949|chr6:36455621-36455990:-|1.0975876874808397|0.0323491566361363|5.08|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_1 5 570.7130126953125 2 570.835457 1139.65636 NaN NaN NaN NaN NaN NaN NaN 63.425 1 66.883 66.383 67.383 3.4578 0 0 0 0.39518 1 14278 14278 1.8442 0 1 17885 16517 11226 11232 21510 21510 0.09211935591042675 KLIHLLRPA 9 Unmodified _KLIHLLRPA_ 0 0 0 nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 MSMS UPN47_class_I_Rep_2 3 530.8538208007812 2 530.853119 1059.69168 NaN NaN NaN NaN NaN NaN NaN 71.41 1 74.7 74.2 75.2 3.2899 0 0 0 0.4007 1 17451 17451 0.52476 0 1 17886 4007 11227 11233 21511 21511 0.16422598118833776 KLIIEAEITFD 11 Unmodified _KLIIEAEITFD_ 0 0 0 REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|56|2|sense REV__L1PA17_dup2668|chrX:57154573-57157800:-|1.528145781963985|0.0408654947427722|5.22|151.0|56|2|sense MSMS UPN48_class_I_Rep_2 6 646.3599853515625 2 646.360836 1290.70712 NaN NaN NaN NaN NaN NaN NaN 104.33 1 108.03 107.53 108.53 3.6991 0 0 0 0.38417 1 24689 24689 2.7352 0 1 + 17887 29462 11228 11234 21512 21512 0.07339375334709075 KLIKTKKSQKR 11 Unmodified _KLIKTKKSQKR_ 0 0 0 REV__HAL1_dup12231|chr9:2801151-2801825:+|1.182245219742023|0.1496583455069064|2.98|151.0|10|2|sense REV__HAL1_dup12231|chr9:2801151-2801825:+|1.182245219742023|0.1496583455069064|2.98|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 453.30548095703125 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 116.41 1 120.07 119.57 120.57 3.6607 0 0 0 0.38417 1 27883 27883 0.094841 0 1 + 17888 23341 11229 11235 21513 21513 0.22873242364676116 KLILLAHLRR 10 Unmodified _KLILLAHLRR_ 0 0 0 REV__AluJr_dup76508|chr19:7394146-7394342:-|4.968572792130411|0.0153391343685546|8.34|151.0|9|1|anti-sense REV__AluJr_dup76508|chr19:7394146-7394342:-|4.968572792130411|0.0153391343685546|8.34|151.0|9|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 616.918701171875 2 616.919324 1231.8241 0.42326 0.00026112 -0.75284 -0.00046444 -0.32957 -0.00020332 616.9184490139281 108.12 0.49741 111.75 111.43 111.93 3.6313 91 41 4 0 0 0 0.56309 1 26124 26124 1.6526 0 1 3882900 + 17889 17058 11230 11236 21514 21514 0.21745622855610236 KLILLNLYPW 10 Unmodified _KLILLNLYPW_ 0 0 0 Charlie1a_dup4360|chr13:19713777-19714316:+|2.257857623361112|0.0941759181498641|4.58|151.0|3|1|sense Charlie1a_dup4360|chr13:19713777-19714316:+|2.257857623361112|0.0941759181498641|4.58|151.0|3|1|sense Charlie1a_dup4360|chr13:19713777-19714316:+|2.257857623361112|0.0941759181498641|4.58|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 636.8873291015625 2 636.889367 1271.76418 NaN NaN NaN NaN NaN NaN NaN 36.752 1 36.752 36.252 37.252 0 0 0 0 0.53105 1 6846 6846 0.40072 0 1 17890 476 11231 11237 21515 21515 0.1391688740175141 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENST00000496778.1_1_1:39317285-39318153:-|nuORF ENST00000496778.1_1_1:39317285-39318153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 511.8341369628906 2 511.83406 1021.65357 0.20927 0.00010711 -0.032154 -1.6457E-05 0.17712 9.0657E-05 511.83388716427436 68.499 0.46828 71.864 71.532 72 3.3646 74 34 3 0 0 0 0.19147 2 16560 16522;16560 21.537 3.3906 1 191460 17891 821 11232 11238 21516;21517 21517 0.14360667413507144 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENST00000496778.1_1_1:39317285-39318153:-|nuORF ENST00000496778.1_1_1:39317285-39318153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 511.8338928222656 2 511.83406 1021.65357 0.21074 0.00010787 -0.12166 -6.2271E-05 0.08908 4.5594E-05 511.8339130291569 68.67 0.47173 72.035 71.98 72.452 3.3646 55 36 2 0 0 0 0.1249 1 16598 16598 29.082 3.6823 1 178620 17892 821 11232 11238 21518 21518 0.14360667413507144 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENST00000496778.1_1_1:39317285-39318153:-|nuORF ENST00000496778.1_1_1:39317285-39318153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 511.83380126953125 2 511.83406 1021.65357 0.073296 3.7515E-05 -0.13472 -6.8955E-05 -0.061427 -3.144E-05 511.8339182000032 68.711 0.32682 71.981 71.76 72.087 3.2696 44 29 2 0 0 0 0.24936 1 16630 16630 17.113 3.2068 1 145770 17893 821 11232 11238 21519 21519 0.14360667413507144 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENST00000496778.1_1_1:39317285-39318153:-|nuORF ENST00000496778.1_1_1:39317285-39318153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 511.8340759277344 2 511.83406 1021.65357 0.076606 3.9209E-05 -0.12348 -6.32E-05 -0.046871 -2.399E-05 511.83396577563394 68.962 0.5742 72.231 72.054 72.629 3.2696 86 46 2 0 0 0 0.081756 1 16715 16715 38.176 7.539 1 174990 17894 821 11232 11238 21520 21520 0.14360667413507144 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENST00000496778.1_1_1:39317285-39318153:-|nuORF ENST00000496778.1_1_1:39317285-39318153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 511.8337707519531 2 511.83406 1021.65357 0.26897 0.00013767 -0.09865 -5.0492E-05 0.17032 8.7177E-05 511.8338760242042 68.94 0.60994 72.138 71.8 72.41 3.1977 78 47 3 0 0 0 0.062142 2 16774 16774;16847 43.772 31.268 1 221560 17895 821 11232 11238 21521;21522 21521 0.14360667413507144 KLIQILYIYV 10 Unmodified _KLIQILYIYV_ 0 0 0 MER57A-int_dup1130|chr11:1898994-1900896:-|1.5271768104008916|0.0353940936480988|5.43|149.0|9|1|sense MER57A-int_dup1130|chr11:1898994-1900896:-|1.5271768104008916|0.0353940936480988|5.43|149.0|9|1|sense MER57A-int_dup1130|chr11:1898994-1900896:-|1.5271768104008916|0.0353940936480988|5.43|149.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 633.3974609375 2 633.397025 1264.7795 NaN NaN NaN NaN NaN NaN NaN 110.53 1 114.11 113.61 114.61 3.5835 0 0 0 0.53105 1 27251 27251 1.6526 1.1279 1 17896 16114 11233 11239 21523 21523 0.15769754198936425 KLISSFKAQ 9 Unmodified _KLISSFKAQ_ 0 0 0 REV__L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|26|2|sense REV__L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|26|2|sense MSMS UPN47_class_I_Rep_2 3 511.3078918457031 2 511.305667 1020.59678 NaN NaN NaN NaN NaN NaN NaN 52.141 1 55.474 54.974 55.974 3.3332 0 0 0 0.38916 1 11610 11610 3.2813 1.2216 1 + 17897 24417 11234 11240 21524 21524 0.08730619856999056 KLIVKRQR 8 Unmodified _KLIVKRQR_ 0 0 0 REV__L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense REV__L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 520.8550415039062 2 520.856193 1039.69783 NaN NaN NaN NaN NaN NaN NaN 108.87 1 112.41 111.91 112.91 3.5382 0 0 0 0.40746 1 26699 26699 0.69038 0 1 + 17898 28111 11235 11241 21525 21525 0.17957116350362412 KLIWQFLKK 9 Unmodified _KLIWQFLKK_ 0 0 0 L1MB7_dup10620|chr9:26888624-26889135:+|1.2559795278925467|0.1757773833407964|2.84|151.0|8|2|sense L1MB7_dup10620|chr9:26888624-26889135:+|1.2559795278925467|0.1757773833407964|2.84|151.0|8|2|sense L1MB7_dup10620|chr9:26888624-26889135:+|1.2559795278925467|0.1757773833407964|2.84|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 602.3829956054688 2 602.384251 1202.75395 NaN NaN NaN NaN NaN NaN NaN 67.75 1 70.942 70.442 71.442 3.1914 0 0 0 0.4007 1 16422 16422 0.52476 0 1 17899 10675 11236 11242 21526 21526 0.1606832446716453 KLKALHALA 9 Unmodified _KLKALHALA_ 0 0 0 REV__L1MEc_dup792|chr1:113693683-113695204:+|1.1923985275240927|0.2779634231000895|2.1|150.0|27|2|sense REV__L1MEc_dup792|chr1:113693683-113695204:+|1.1923985275240927|0.2779634231000895|2.1|150.0|27|2|sense MSMS UPN47_class_I_Rep_3 4 482.795654296875 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 116.62 1 120.08 119.58 120.58 3.462 0 0 0 0.4029 1 28704 28704 0 0 1 + 17900 28481 11237 11243 21527 21527 0.13966933819096994 KLKDAPIF 8 Unmodified _KLKDAPIF_ 0 0 0 REV__nc|ENSG00000109685|O96028-7|NSD2 REV__nc|ENSG00000109685|O96028-7|NSD2 MULTI-MSMS UPN46_class_I_Rep_3 1 466.2851257324219 2 466.284203 930.553853 0.1508 7.0317E-05 0.23773 0.00011085 0.38853 0.00018117 466.2843641751087 59.712 0.32095 59.712 59.441 59.762 0 55 37 2 0 0 0 0.82752 1 13222 13222 37.974 0 1 703750 + 17901 18409 11238 11244 21528 21528 0.08579849799548356 KLKDRDVKLH 10 Unmodified _KLKDRDVKLH_ 0 0 0 REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|22|2|sense REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.3787841796875 2 626.380229 1250.7459 0.60023 0.00037598 -0.9176 -0.00057477 -0.31737 -0.00019879 626.3797540129832 98.409 0.81717 102.31 102.18 103 3.9022 179 116 3 0 0 0 0.56337 1 23459 23459 2.9952 1.8019 1 2643600 + 17902 28396 11239 11245 21529 21529 0.1305614547973164 KLKEEELYRNL 11 Unmodified _KLKEEELYRNL_ 0 0 0 nc|ENSG00000170264|Q3B820-2|FAM161A;nc|ENSG00000170264|Q3B820|FAM161A;ENSG00000170264|ENST00000404929|FAM161A nc|ENSG00000170264|Q3B820-2|FAM161A nc|ENSG00000170264|Q3B820-2|FAM161A MSMS UPN46_class_I_Rep_3 1 478.93658447265625 3 478.936553 1433.78783 NaN NaN NaN NaN NaN NaN NaN 51.143 1 51.143 50.643 51.643 0 0 0 0 0.38417 1 10851 10851 2.2527 0.32522 1 17903 4464 11240 11246 21530 21530 0.08828656377613697 KLKGKLIKVPR 11 Unmodified _KLKGKLIKVPR_ 0 0 0 REV__HAL1_dup2573|chr2:68183616-68184013:-|1.7008682190854336|0.2358762898797488|2.85|151.0|11|2|sense REV__HAL1_dup2573|chr2:68183616-68184013:-|1.7008682190854336|0.2358762898797488|2.85|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 427.3026123046875 3 427.30273 1278.88636 NaN NaN NaN NaN NaN NaN NaN 63.743 1 66.998 66.498 67.498 3.2556 0 0 0 0.38417 1 15139 15139 0.45452 0.29519 1 + 17904 23410 11241 11247 21531 21531 0.2580734920395571 KLKHHHLLW 9 Unmodified _KLKHHHLLW_ 0 0 0 REV__MER47A_dup831|chr5:141543466-141543784:+|1.332759835504018|0.0100131634535515|7.06|151.0|25|3|anti-sense REV__MER47A_dup831|chr5:141543466-141543784:+|1.332759835504018|0.0100131634535515|7.06|151.0|25|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.361083984375 2 606.361642 1210.70873 0.35701 0.00021648 -1.0168 -0.00061656 -0.65981 -0.00040008 606.3608518790867 30.558 0.099831 30.558 30.477 30.576 0 10 6 2 0 0 0 0.50015 1 4999 4999 0.6015 0.076735 1 137030 + 17905 31339 11242 11248 21532 21532 0.11180518724654576 KLKISEAIS 9 Unmodified _KLKISEAIS_ 0 0 0 REV__L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|125|3|sense REV__L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|125|3|sense MSMS UPN47_class_I_Rep_1 2 494.8059387207031 2 494.8055 987.596446 NaN NaN NaN NaN NaN NaN NaN 75.103 1 78.496 77.996 78.996 3.3937 0 0 0 0.39518 1 18519 18519 1.8442 0 1 + 17906 30095 11243 11249 21533 21533 0.10215200137122338 KLKKFLFRWLT 11 Unmodified _KLKKFLFRWLT_ 0 0 0 REV__L1MA4A_dup409|chr1:220129234-220130555:-|1.3008359396029947|0.1844652503812477|2.82|151.0|44|3|sense REV__L1MA4A_dup409|chr1:220129234-220130555:-|1.3008359396029947|0.1844652503812477|2.82|151.0|44|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 493.64508056640625 3 493.978135 1478.91258 0.19508 9.6364E-05 1.3393 0.0006616 1.5344 0.00075797 494.313272740215 36.847 0.058365 36.847 36.8 36.859 0 6 4 2 0 0 0 22.551 1 6866 6866 0.094841 0 1 77738 + 17907 25301 11244 11250 21534 21534 0.19227618375452948 KLKKPRGRP 9 Unmodified _KLKKPRGRP_ 0 0 0 REV__chr6:34243518-34244834|68|22.15|0.66|5.07|+|0|HMGA1,None|1 REV__chr6:34243518-34244834|68|22.15|0.66|5.07|+|0|HMGA1,None|1 MSMS UPN46_class_I_Rep_3 1 540.3637084960938 2 540.361642 1078.70873 NaN NaN NaN NaN NaN NaN NaN 49.335 1 49.335 48.835 49.835 0 0 0 0 0.39518 1 10350 10350 1.8442 0 1 + 17908 17455 11245 11251 21535 21535 0.17252518724649235 KLKLDLFLTQ 10 Unmodified _KLKLDLFLTQ_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|176|3|sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|176|3|sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|176|3|sense MSMS UPN47_class_I_Rep_1 2 406.91827392578125 3 406.920063 1217.73836 NaN NaN NaN NaN NaN NaN NaN 103.77 1 107.53 107.03 108.03 3.7627 0 0 0 0.53105 1 25510 25510 1.4551 0 1 17909 13643 11246 11252 21536 21536 0.1381999315944995 KLKLDVYKVF 10 Unmodified _KLKLDVYKVF_ 0 0 0 LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense MSMS UPN47_class_I_Rep_1 2 626.888671875 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.57 1 109.31 108.81 109.81 3.7395 0 0 0 0.53105 1 25903 25903 3.2813 0.28607 1 17910 15653 11247 11253 21537 21537 0.1432858353912252 KLKLDVYKVF 10 Unmodified _KLKLDVYKVF_ 0 0 0 LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 626.88818359375 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.03 1 107.65 107.15 108.15 3.6209 0 0 0 0.53105 1 25072 25072 3.2813 0.54611 1 17911 15653 11247 11253 21538 21538 0.1432858353912252 KLKLDVYKVF 10 Unmodified _KLKLDVYKVF_ 0 0 0 LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 626.8897094726562 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.59 1 108.22 107.72 108.72 3.6247 0 0 0 0.53105 1 25201 25201 3.2813 0.28607 1 17912 15653 11247 11253 21539 21539 0.1432858353912252 KLKLDVYKVF 10 Unmodified _KLKLDVYKVF_ 0 0 0 LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 626.8887939453125 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.03 1 108.72 108.22 109.22 3.6901 0 0 0 0.53105 1 24852 24852 3.2813 0.54611 1 17913 15653 11247 11253 21540 21540 0.1432858353912252 KLKLLYFLILW 11 Unmodified _KLKLLYFLILW_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|390|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|390|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|390|3|anti-sense MSMS UPN47_class_I_Rep_3 4 483.9809875488281 3 483.979253 1448.91593 NaN NaN NaN NaN NaN NaN NaN 78.34 1 81.621 81.121 82.121 3.2816 0 0 0 0.38417 1 19532 19532 0.094841 0.011491 1 17914 8241 11248 11254 21541 21541 0.20942868429438022 KLKLRQLPIRG 11 Unmodified _KLKLRQLPIRG_ 0 0 0 REV__ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|1|intron REV__ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|1|intron MSMS UPN46_class_I_Rep_3 1 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 27.739 1 27.739 27.239 28.239 0 0 0 0 0.38417 1 4159 4159 0.50596 0.41111 1 + 17915 18347 11249 11255 21542 21542 0.22417277055819795 KLKLVALHK 9 Unmodified _KLKLVALHK_ 0 0 0 ENSG00000182827|ENST00000366812|ACBD3 ENSG00000182827|ENST00000366812|ACBD3 ENSG00000182827|ENST00000366812|ACBD3 MSMS UPN48_class_I_Rep_2 6 525.36328125 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 73.709 1 77.287 76.787 77.787 3.5779 0 0 0 0.4007 1 17318 17318 0.52476 0 1 17916 4972 11250 11256 21543 21543 0.1896776877861157 KLKNQAELY 9 Unmodified _KLKNQAELY_ 0 0 0 nc|ENSG00000170558|P19022-2|CDH2 nc|ENSG00000170558|P19022-2|CDH2 nc|ENSG00000170558|P19022-2|CDH2 MULTI-MSMS UPN47_class_I_Rep_2 3 553.814208984375 2 553.813856 1105.61316 0.51585 0.00028568 -0.46567 -0.0002579 0.050174 2.7787E-05 553.813530861384 57.529 0.93649 60.821 60.499 61.436 3.2912 169 77 3 0 0 0 0.28552 1 13353 13353 14.838 0 1 514060 17917 16747 11251 11257 21544 21544 0.06457701023077789 KLKPPEGEMV 10 Unmodified _KLKPPEGEMV_ 0 0 0 REV__ENST00000534669.1_1_2:17942696-17946406:+|nuORF REV__ENST00000534669.1_1_2:17942696-17946406:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.310546875 2 564.310092 1126.60563 NaN NaN NaN NaN NaN NaN NaN 37.174 1 40.843 40.343 41.343 3.6692 0 0 0 0.53105 1 7024 7024 0.40072 0.40072 1 + 17918 20648 11252 11258 21545 21545 0.04739225431148952 KLKPSSKI 8 Unmodified _KLKPSSKI_ 0 0 0 REV__L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|102|3|anti-sense REV__L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|102|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 450.7970886230469 2 450.797478 899.580402 0.068903 3.1061E-05 -0.72694 -0.0003277 -0.65803 -0.00029664 450.797076791866 33.33 0.6196 37.019 36.761 37.38 3.6896 95 66 2 0 0 0 0.82752 1 5153 5153 5.7319 0 1 74229 + 17919 25308 11253 11259 21546 21546 0.12659538690888894 KLKQNSIALI 10 Unmodified _KLKQNSIALI_ 0 0 0 REV__L1MDa_dup6142|chr18:9177827-9179521:-|1.4637887749870118|0.0755020095029789|4.28|151.0|30|2|sense REV__L1MDa_dup6142|chr18:9177827-9179521:-|1.4637887749870118|0.0755020095029789|4.28|151.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 564.3602294921875 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 81.427 1 84.989 84.489 85.489 3.5624 0 0 0 0.53105 1 19417 19417 1.3295 0 1 + 17920 27541 11254 11260 21547 21547 0.14910839845219925 KLKRKIKHGQ 10 Unmodified _KLKRKIKHGQ_ 0 0 0 REV__L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|4|1|sense REV__L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 618.4055786132812 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 83.819 1 83.819 83.319 84.319 0 0 0 0 0.53105 1 19922 19922 0.40072 0 1 + 17921 25406 11255 11261 21548 21548 0.19060148333210236 KLKRPIHH 8 Unmodified _KLKRPIHH_ 0 0 0 REV__L1MC4_dup8243|chr5:137931746-137932077:+|1.0687801297763129|0.0156791992449293|6.09|150.0|23|3|anti-sense REV__L1MC4_dup8243|chr5:137931746-137932077:+|1.0687801297763129|0.0156791992449293|6.09|150.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 514.8272094726562 2 514.827435 1027.64032 NaN NaN NaN NaN NaN NaN NaN 41.341 1 45.012 44.512 45.512 3.6719 0 0 0 0.40625 1 8291 8291 2.3027 0 1 + 17922 26946 11256 11262 21549 21549 0.1276027414478449 KLKSPFNVL 9 Unmodified _KLKSPFNVL_ 0 0 0 ENST00000344337.10_1_3:122140911-122141163:-|nuORF ENST00000344337.10_1_3:122140911-122141163:-|nuORF ENST00000344337.10_1_3:122140911-122141163:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 523.802978515625 2 523.32386 1044.63317 0.41671 0.00021807 -0.60531 -0.00031677 -0.1886 -9.8697E-05 523.3234095536037 63.326 0.75021 66.784 66.381 67.131 3.4578 75 56 2 0 0 0 0.11884 1 14265 14265 9.3831 0.63772 1 140700 17923 6254 11257 11263 21550 21550 0.1126349675369056 KLKWWIGY 8 Unmodified _KLKWWIGY_ 0 0 0 ENSG00000145569|ENST00000274217|OTULINL;ENST00000513825.1_1_5:14601096-14602296:+|nuORF ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL MSMS UPN46_class_I_Rep_3 1 547.3128662109375 2 547.313295 1092.61204 NaN NaN NaN NaN NaN NaN NaN 118.11 1 118.11 117.61 118.61 0 0 0 0 0.40738 1 29304 29304 0.79363 0 1 17924 3401 11258 11264 21551 21551 0.06943531444835571 KLLAACCNHFD 11 Unmodified _KLLAACCNHFD_ 0 0 0 REV__L1MB8_dup3970|chr4:99931957-99933171:+|1.3349911595858497|0.0839054025467883|3.99|151.0|45|3|sense REV__L1MB8_dup3970|chr4:99931957-99933171:+|1.3349911595858497|0.0839054025467883|3.99|151.0|45|3|sense MSMS UPN47_class_I_Rep_3 4 617.7938842773438 2 617.789001 1233.56345 NaN NaN NaN NaN NaN NaN NaN 66.558 1 69.744 69.244 70.244 3.1853 0 0 0 0.38417 1 16061 16061 1.1933 0 1 + 17925 26414 11259 11265 21552 21552 -0.04399073248896457 KLLCMRVLI 9 Unmodified _KLLCMRVLI_ 0 0 0 ENST00000315183.11_2_16:24836827-24836932:+|nuORF ENST00000315183.11_2_16:24836827-24836932:+|nuORF ENST00000315183.11_2_16:24836827-24836932:+|nuORF MSMS UPN47_class_I_Rep_3 4 544.794677734375 2 544.837765 1087.66098 NaN NaN NaN NaN NaN NaN NaN 69.226 1 72.43 71.93 72.93 3.2044 0 0 0 0.38639 1 16868 16868 3.9444 0.66309 1 17926 6130 11260 11266 21553 21553 0.12065360417932425 KLLEQALVI 9 Unmodified _KLLEQALVI_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;ENSG00000116254|ENST00000262450|CHD5 ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5 ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS UPN48_class_I_Rep_2 6 513.8323974609375 2 513.831517 1025.64848 0.3795 0.000195 0.32925 0.00016918 0.70874 0.00036418 513.8315897370516 62.984 0.47612 66.458 66.306 66.782 3.4738 45 35 2 0 0 0 0.279 1 14109 14109 15.248 3.0078 1 249760 17927 1978;2174 11261 11267 21554 21554 0.13668363550891627 KLLEVYEQL 9 Unmodified _KLLEVYEQL_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS UPN47_class_I_Rep_1 2 567.8224487304688 2 567.823889 1133.63323 0.39292 0.00022311 -0.22452 -0.00012749 0.1684 9.5623E-05 567.8235614697419 59.08 0.37021 62.497 62.211 62.582 3.4171 41 24 2 0 0 0 0.10509 4 13648 13638;13648;13681;13689 32.898 8.3403 1 68942 17928 2563 11262 11268 21555;21556;21557;21558 21556 0.07175451963030355 KLLEVYEQL 9 Unmodified _KLLEVYEQL_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS UPN47_class_I_Rep_2 3 567.8236694335938 2 567.823889 1133.63323 0.5112 0.00029027 -0.7235 -0.00041082 -0.21229 -0.00012055 567.8233416788325 59.248 0.30678 62.521 62.438 62.745 3.2731 30 20 2 0 0 0 0.37318 1 13772 13772 9.544 1.3884 1 77639 17929 2563 11262 11268 21559 21559 0.07175451963030355 KLLEVYEQL 9 Unmodified _KLLEVYEQL_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MATCH UPN47_class_I_Rep_3 4 2 567.823889 1133.63323 0.35307 0.00020048 -0.33245 -0.00018877 0.020619 1.1708E-05 567.8236381229874 59.382 0.28532 62.547 62.466 62.751 3.1651 0.025405 0.00010847 NaN 32.898 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 60525 17930 2563 11262 11268 0.07175451963030355 KLLFAWKFK 9 Unmodified _KLLFAWKFK_ 0 0 0 L1M5_dup46632|chr16:29398506-29398768:+|1.0133511968110611|0.3666766138245279|1.47|151.0|5|1|sense;L1M5_dup46423|chr16:21419779-21420057:+|1.002738237469352|0.1937016974118874|2.37|151.0|5|1|sense L1M5_dup46632|chr16:29398506-29398768:+|1.0133511968110611|0.3666766138245279|1.47|151.0|5|1|sense L1M5_dup46632|chr16:29398506-29398768:+|1.0133511968110611|0.3666766138245279|1.47|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 590.8663330078125 2 590.865695 1179.71684 NaN NaN NaN NaN NaN NaN NaN 96.139 1 99.904 99.404 100.4 3.7648 0 0 0 0.39518 1 23846 23846 1.8442 1.3195 1 17931 9176 11263 11269 21560 21560 0.1341665292138714 KLLFAWKFK 9 Unmodified _KLLFAWKFK_ 0 0 0 L1M5_dup46632|chr16:29398506-29398768:+|1.0133511968110611|0.3666766138245279|1.47|151.0|5|1|sense;L1M5_dup46423|chr16:21419779-21420057:+|1.002738237469352|0.1937016974118874|2.37|151.0|5|1|sense L1M5_dup46632|chr16:29398506-29398768:+|1.0133511968110611|0.3666766138245279|1.47|151.0|5|1|sense L1M5_dup46632|chr16:29398506-29398768:+|1.0133511968110611|0.3666766138245279|1.47|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 590.8674926757812 2 590.865695 1179.71684 NaN NaN NaN NaN NaN NaN NaN 96.392 1 99.871 99.371 100.37 3.4791 0 0 0 0.39518 1 23686 23686 1.8442 1.3195 1 17932 9176 11263 11269 21561 21561 0.1341665292138714 KLLFVLEWT 9 Unmodified _KLLFVLEWT_ 0 0 0 REV__ENST00000011619.5_1_6:13659029-13697038:-|nuORF REV__ENST00000011619.5_1_6:13659029-13697038:-|nuORF MSMS UPN48_class_I_Rep_2 6 574.8400268554688 2 574.839342 1147.66413 NaN NaN NaN NaN NaN NaN NaN 111.43 1 115.09 114.59 115.59 3.6666 0 0 0 0.4007 1 26505 26505 0.52476 0 1 + 17933 21459 11264 11270 21562 21562 0.0962065006795001 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_1 2 512.3133544921875 2 512.313492 1022.61243 0.006039 3.0939E-06 -0.50969 -0.00026112 -0.50365 -0.00025803 512.3132365240284 46.572 1.0577 50.272 49.823 50.881 3.6999 153 66 3 0 0 0 0.022868 1 9826 9826 61.602 15.902 1 329240 17934 1187 11265 11271 21563 21563 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_2 3 512.3131103515625 2 512.313492 1022.61243 -0.023672 -1.2127E-05 -0.30229 -0.00015487 -0.32596 -0.000167 512.3133141266949 47.139 0.94654 50.491 50.007 50.953 3.3515 137 70 3 0 0 0 0.088679 1 10141 10141 36.506 12.486 1 151060 17935 1187 11265 11271 21564 21564 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;PCM1|p.A961Dfs*3|1|0.06|ENSG00000078674|chr8:17966024-17966025|-/A|frameshift_variant;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MULTI-MSMS UPN47_class_I_Rep_3 4 512.3135986328125 2 512.313492 1022.61243 0.16535 8.471E-05 -0.35721 -0.00018301 -0.19187 -9.8295E-05 512.3133252128055 47.234 0.79119 50.478 50.019 50.811 3.2439 72 50 3 0 0 0 0.0053074 1 10224 10224 79.596 25.764 1 280300 17936 1187 11265 11271 21565 21565 0.10202906374036047 KLLILIKSKLS 11 Unmodified _KLLILIKSKLS_ 0 0 0 L1MB8_dup12577|chr13:102660374-102661250:+|1.1236514453960715|0.3544052414099317|1.66|151.0|34|1|anti-sense L1MB8_dup12577|chr13:102660374-102661250:+|1.1236514453960715|0.3544052414099317|1.66|151.0|34|1|anti-sense L1MB8_dup12577|chr13:102660374-102661250:+|1.1236514453960715|0.3544052414099317|1.66|151.0|34|1|anti-sense MSMS UPN46_class_I_Rep_3 1 628.4398803710938 2 628.439224 1254.86389 NaN NaN NaN NaN NaN NaN NaN 60.89 1 60.89 60.39 61.39 0 0 0 0 0.38417 1 13526 13526 0.30703 0 1 17937 10932 11266 11272 21566 21566 0.2466570501571823 KLLINRMKHR 10 Unmodified _KLLINRMKHR_ 0 0 0 REV__L1MC4_dup18534|chr13:46706827-46707532:-|1.2693561448856|0.1648647829463375|2.94|150.0|3|1|sense REV__L1MC4_dup18534|chr13:46706827-46707532:-|1.2693561448856|0.1648647829463375|2.94|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.9398193359375 3 436.939686 1307.79723 0.020324 8.8805E-06 0.045243 1.9768E-05 0.065567 2.8649E-05 436.9396844255266 45.584 1.7437 49.342 48.761 50.504 3.7579 190 125 2 0 0 0 0.56444 1 8950 8950 0.69767 0.69767 1 267230 + 17938 26844 11267 11273 21567 21567 0.1556419097280468 KLLKFRVVY 9 Unmodified _KLLKFRVVY_ 0 0 0 REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|79|2|anti-sense REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|79|2|anti-sense MSMS UPN48_class_I_Rep_2 6 583.3772583007812 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 44.343 1 48.104 47.604 48.604 3.7617 0 0 0 0.40038 1 8441 8441 0.6015 0 1 + 17939 28470 11268 11274 21568 21568 0.16252037950130216 KLLKKRLWYKI 11 Unmodified _KLLKKRLWYKI_ 0 0 0 REV__HAL1_dup2114|chr2:24668119-24669182:+|1.0547234984002538|0.0378000499909229|4.8|151.0|42|3|sense REV__HAL1_dup2114|chr2:24668119-24669182:+|1.0547234984002538|0.0378000499909229|4.8|151.0|42|3|sense MSMS UPN46_class_I_Rep_3 1 496.998046875 3 496.997418 1487.97043 NaN NaN NaN NaN NaN NaN NaN 74.082 1 74.082 73.582 74.582 0 0 0 0 0.38417 1 17184 17184 0 0 1 + 17940 23402 11269 11275 21569 21569 0.2459588030087616 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 469.3288879394531 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 112.2 1 112.2 111.7 112.7 0 0 0 0 0.38417 1 27696 27696 0.094841 0.094841 1 17941 12539 11270 11276 21570 21570 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 469.3287353515625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 91.184 1 94.889 94.389 95.389 3.7053 0 0 0 0.38417 1 22767 22767 0.08335 0 1 17942 12539 11270 11276 21571 21571 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 469.3280029296875 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 16.279 1 19.666 19.166 20.166 3.3864 0 0 0 0.38417 1 1014 1014 0.094841 0.094841 1 17943 12539 11270 11276 21572 21572 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 469.3282775878906 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 29.883 1 33.206 32.706 33.706 3.3235 0 0 0 0.38417 1 4887 4887 0.094841 0.094841 1 17944 12539 11270 11276 21573 21573 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 469.3288269042969 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 95.529 1 98.938 98.438 99.438 3.4095 0 0 0 0.38417 1 23743 23743 0.094841 0.094841 1 17945 12539 11270 11276 21574 21574 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 469.3286437988281 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 84.249 1 87.846 87.346 88.346 3.5973 0 0 0 0.38417 1 20168 20168 0.08335 0 1 17946 12539 11270 11276 21575 21575 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 469.328857421875 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 87.485 1 91.104 90.604 91.604 3.6187 0 0 0 0.38417 1 20964 20964 0.094841 0.094841 1 17947 12539 11270 11276 21576 21576 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 469.32830810546875 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 115.06 1 118.69 118.19 119.19 3.6282 0 0 0 0.38417 1 27986 27986 0.094841 0.094841 1 17948 12539 11270 11276 21577 21577 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 469.3287048339844 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 76.744 1 80.327 79.827 80.827 3.5831 0 0 0 0.38417 1 18087 18087 0.094841 0.094841 1 17949 12539 11270 11276 21578 21578 0.27218263557665523 KLLLFKKFLKK 11 Unmodified _KLLLFKKFLKK_ 0 0 0 L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense L1ME2_dup9220|chr12:76534738-76536055:+|1.4536776557466329|0.0092257834793344|7.3|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 469.3290100097656 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 88.099 1 91.909 91.409 92.409 3.8104 0 0 0 0.38417 1 20910 20910 0.094841 0.094841 1 17950 12539 11270 11276 21579 21579 0.27218263557665523 KLLLFLLKR 9 Unmodified _KLLLFLLKR_ 0 0 0 L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|51|1|anti-sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|51|1|anti-sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.4006958007812 2 572.402444 1142.79034 NaN NaN NaN NaN NaN NaN NaN 109.35 1 112.99 112.49 113.49 3.6321 0 0 0 0.4007 1 26553 26553 0.52476 0 1 17951 12530 11271 11277 21580 21580 0.2246520136388881 KLLLLRYLLFA 11 Unmodified _KLLLLRYLLFA_ 0 0 0 REV__ENSG00000143315|ENST00000368090|PIGM REV__ENSG00000143315|ENST00000368090|PIGM MULTI-MSMS UPN48_class_I_Rep_3 7 454.967529296875 3 454.967236 1361.87988 0.090322 4.1094E-05 0.67899 0.00030892 0.76931 0.00035001 455.30182164479464 42.308 0.6461 45.949 45.848 46.494 3.6415 80 49 3 0 0 0 0.68478 1 7788 7788 0.094841 0.094841 1 193730 + 17952 19435 11272 11278 21581 21581 0.2134141125259248 KLLLLRYLLFA 11 Unmodified _KLLLLRYLLFA_ 0 0 0 REV__ENSG00000143315|ENST00000368090|PIGM REV__ENSG00000143315|ENST00000368090|PIGM MULTI-MATCH UPN46_class_I_Rep_3 1 3 454.967236 1361.87988 0.16588 7.547E-05 0.79288 0.00036073 0.95876 0.0004362 454.96755221733804 45.784 0.15059 45.784 45.723 45.873 0 -0.099133 2.9962E-05 NaN 0.094841 29 16 3 NaN NaN NaN NaN 0 NaN NaN 0 86530 + 17953 19435 11272 11278 0.2134141125259248 KLLLLWEYK 9 Unmodified _KLLLLWEYK_ 0 0 0 Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|39|3|anti-sense Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|39|3|anti-sense Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|39|3|anti-sense MSMS UPN48_class_I_Rep_2 6 603.3679809570312 2 603.368267 1204.72198 NaN NaN NaN NaN NaN NaN NaN 73.21 1 76.774 76.274 77.274 3.5645 0 0 0 0.39518 1 17181 17181 1.8442 0.19162 1 17954 33258 11273 11279 21582 21582 0.12780911993354493 KLLNIQQQL 9 Unmodified _KLLNIQQQL_ 0 0 0 nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1 nc|ENSG00000128487|Q5M775-5|SPECC1 nc|ENSG00000128487|Q5M775-5|SPECC1 MULTI-SECPEP UPN47_class_I_Rep_1 2 549.2099609375 2 549.337498 1096.66044 0.32798 0.00018017 -0.10222 -5.6154E-05 0.22576 0.00012402 549.3374955568456 52.057 0.39385 55.615 55.316 55.709 3.5585 33 27 2 0 0 0 0.12321 1 11582 11582 3.9444 0 1 81297 17955 2591 11274 11280 21583 21583 0.11597980294095578 KLLPQLTYL 9 Unmodified _KLLPQLTYL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MSMS UPN47_class_I_Rep_1 2 544.8378295898438 2 544.839342 1087.66413 NaN NaN NaN NaN NaN NaN NaN 68.993 1 72.361 71.861 72.861 3.3678 0 0 0 0.37891 1 16691 16691 5.7319 1.7875 1 17956 3169 11275 11281 21584 21584 0.12380650067916577 KLLPQLTYL 9 Unmodified _KLLPQLTYL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 544.8394165039062 2 544.839342 1087.66413 0.43103 0.00023484 -0.53374 -0.0002908 -0.10271 -5.596E-05 544.8390657539097 69.61 0.32605 72.815 72.675 73.002 3.2044 29 25 2 0 0 0 0.38714 3 17018 16996;17009;17018 8.7454 0 1 60586 17957 3169 11275 11281 21585;21586;21587 21587 0.12380650067916577 KLLPQLTYL 9 Unmodified _KLLPQLTYL_ 0 0 0 ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|4|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|1|intron;ENSG00000140350.15,ANP32A,chr15,-,I4.1,68787920,68789242|37|14.75|3|intron;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B ENST00000483551.6_1_15:69072422-69081590:-|nuORF ENST00000483551.6_1_15:69072422-69081590:-|nuORF MSMS UPN47_class_I_Rep_3 4 544.8395385742188 2 544.839342 1087.66413 NaN NaN NaN NaN NaN NaN NaN 69.064 1 72.269 71.769 72.769 3.2044 0 0 0 0.37476 1 16819 16819 6.7232 2.7788 1 17958 3169 11275 11281 21588 21588 0.12380650067916577 KLLPTLVP 8 Unmodified _KLLPTLVP_ 0 0 0 nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5;nc|ENSG00000176927|A4FU69-5|EFCAB5;nc|ENSG00000176927|A4FU69-2|EFCAB5;nc|ENSG00000176927|A4FU69-4|EFCAB5 nc|ENSG00000176927|A4FU69-3|EFCAB5 nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MSMS UPN47_class_I_Rep_1 2 440.799560546875 2 440.796946 879.57934 -0.40861 -0.00018011 3.3043 0.0014565 2.8956 0.0012764 440.79977011182075 29.122 0.62955 32.88 32.726 33.356 3.7578 70 50 2 0 0 0 0.82752 1 4611 4611 0.69038 0 1 92088 17959 4773 11276 11282 21589 21589 0.1347332432200119 KLLQFYPSL 9 Unmodified _KLLQFYPSL_ 0 0 0 ENSG00000086730|ENST00000460943|LAT2;nc|ENSG00000086730|Q9GZY6-2|LAT2 ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_1 2 554.8233642578125 2 554.823692 1107.63283 0.37475 0.00020792 -0.44061 -0.00024446 -0.065859 -3.654E-05 554.8232976682859 69.241 0.62462 72.609 72.24 72.865 3.3678 79 48 2 0 0 0 0.30034 1 16749 16749 13.906 1.6654 1 143370 17960 1285 11277 11283 21590 21590 0.0833207703383323 KLLQFYPSL 9 Unmodified _KLLQFYPSL_ 0 0 0 ENSG00000086730|ENST00000460943|LAT2;nc|ENSG00000086730|Q9GZY6-2|LAT2 ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_2 3 554.8238525390625 2 554.823692 1107.63283 0.40292 0.00022355 -0.32249 -0.00017893 0.080426 4.4622E-05 554.8232821406654 69.555 0.46652 72.831 72.596 73.063 3.2761 61 38 2 0 0 0 0.43153 1 16871 16871 6.2058 0.9089 1 97555 17961 1285 11277 11283 21591 21591 0.0833207703383323 KLLQFYPSL 9 Unmodified _KLLQFYPSL_ 0 0 0 ENSG00000086730|ENST00000460943|LAT2;nc|ENSG00000086730|Q9GZY6-2|LAT2 ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_2 3 554.8233642578125 2 554.823692 1107.63283 0.40828 0.00022652 -0.36327 -0.00020155 0.045007 2.4971E-05 554.8234367834656 70.208 0.21793 73.49 73.365 73.583 3.2828 23 19 2 0 0 0 0.36392 1 17103 17103 10.074 2.7847 1 45182 17962 1285 11277 11283 21592 21592 0.0833207703383323 KLLRKPFLHHK 11 Unmodified _KLLRKPFLHHK_ 0 0 0 REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|151|2|sense REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|151|2|sense MSMS UPN46_class_I_Rep_3 1 472.9712219238281 3 472.969863 1415.88776 NaN NaN NaN NaN NaN NaN NaN 57.287 1 57.287 56.787 57.787 0 0 0 0 0.38417 1 12542 12542 0.45452 0.046251 1 + 17963 30453 11278 11284 21593 21593 0.19644983292732832 KLLSEALEL 9 Unmodified _KLLSEALEL_ 0 0 0 nc|ENSG00000116205|Q96MN5-2|TCEANC2;ENSG00000116205|ENST00000234827|TCEANC2 nc|ENSG00000116205|Q96MN5-2|TCEANC2 nc|ENSG00000116205|Q96MN5-2|TCEANC2 MULTI-MSMS UPN47_class_I_Rep_1 2 508.3052978515625 2 508.305332 1014.59611 0.23938 0.00012168 -0.28587 -0.00014531 -0.04649 -2.3631E-05 508.3051756663511 61.656 0.51212 65.024 64.748 65.26 3.3681 51 36 2 0 0 0 0.39745 1 14443 14443 8.1555 2.4237 1 113030 17964 2170 11279 11285 21594 21594 0.08939780417267684 KLMKEHTN 8 Unmodified _KLMKEHTN_ 0 0 0 REV__L1PB1_dup6982|chr9:21845046-21846886:+|2.087200155594382|0.0702589811533972|4.89|151.0|56|3|sense REV__L1PB1_dup6982|chr9:21845046-21846886:+|2.087200155594382|0.0702589811533972|4.89|151.0|56|3|sense MSMS UPN48_class_I_Rep_1 5 500.7659912109375 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 32.19 1 35.717 35.217 36.217 3.5266 0 0 0 0.40746 1 4863 4863 0.69038 0 1 + 17965 30480 11280 11286 21595 21595 0.01737229911339 KLMKRRNKH 9 Unmodified _KLMKRRNKH_ 0 0 0 REV__L1MA9_dup12265|chr12:66220820-66221747:-|1.2162178786141584|0.048043199234045|4.66|151.0|32|3|sense REV__L1MA9_dup12265|chr12:66220820-66221747:-|1.2162178786141584|0.048043199234045|4.66|151.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 404.2489929199219 3 404.248631 1209.72406 NaN NaN NaN NaN NaN NaN NaN 42.135 1 45.374 44.874 45.874 3.2394 0 0 0 0.39887 1 8616 8616 0.96228 0 1 + 17966 25603 11281 11287 21596 21596 0.12759062250188435 KLNEILQAR 9 Unmodified _KLNEILQAR_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN46_class_I_Rep_3 1 542.3665771484375 2 542.827298 1083.64004 0.29689 0.00016116 0.062381 3.3862E-05 0.35927 0.00019502 542.8271490370754 38.36 0.13737 38.36 38.322 38.459 0 19 12 2 0 0 0 0.33908 1 7321 7321 11.495 5.2889 1 102590 17967 5036 11282 11288 21597 21597 0.10156809634258934 KLNEILQAR 9 Unmodified _KLNEILQAR_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN46_class_I_Rep_3 1 542.8275146484375 2 542.827298 1083.64004 NaN NaN NaN NaN NaN NaN NaN 38.542 1 38.542 38.042 39.042 0 0 0 0 0.37891 1 7345 7345 5.7319 2.1354 1 17968 5036 11282 11288 21598 21598 0.10156809634258934 KLNKENKTL 9 Unmodified _KLNKENKTL_ 0 0 0 nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1 nc|ENSG00000187164|A0MZ66-2|SHTN1 nc|ENSG00000187164|A0MZ66-2|SHTN1 MULTI-MSMS UPN47_class_I_Rep_2 3 544.3270874023438 2 544.327131 1086.63971 0.012828 6.9828E-06 -0.16619 -9.046E-05 -0.15336 -8.3478E-05 544.3269849420462 38.038 1.0775 41.426 41.024 42.102 3.3879 224 87 3 0 0 0 0.14216 1 7285 7285 26.268 0 1 450800 17969 5183 11283 11289 21599 21599 0.09985389914413645 KLNKENKTL 9 Unmodified _KLNKENKTL_ 0 0 0 nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1 nc|ENSG00000187164|A0MZ66-2|SHTN1 nc|ENSG00000187164|A0MZ66-2|SHTN1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.3269653320312 2 544.327131 1086.63971 -0.074383 -4.0489E-05 -0.21916 -0.00011929 -0.29354 -0.00015978 544.3270213355781 38.279 1.2339 41.52 41.032 42.266 3.2414 199 90 3 0 0 0 0.14216 1 7378 7378 26.268 0 1 471840 17970 5183 11283 11289 21600 21600 0.09985389914413645 KLNLQAVGI 9 Unmodified _KLNLQAVGI_ 0 0 0 CON__P01030 CON__P01030 CON__P01030 MSMS UPN47_class_I_Rep_1 2 478.3002014160156 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 68.236 1 71.6 71.1 72.1 3.3646 0 0 0 0.29868 1 16459 16459 10.824 0 1 + 17971 631 11284 11290 21601 21601 0.10710637202555517 KLNLQAVGI 9 Unmodified _KLNLQAVGI_ 0 0 0 CON__P01030 CON__P01030 CON__P01030 MULTI-MSMS UPN47_class_I_Rep_3 4 478.3009033203125 2 478.300384 954.586216 0.061956 2.9634E-05 0.3635 0.00017386 0.42545 0.00020349 478.3005619076289 68.389 0.51582 71.587 71.234 71.75 3.1977 47 32 2 0 0 0 0.35081 1 16556 16556 10.824 3.5347 1 116300 + 17972 631 11284 11290 21602 21602 0.10710637202555517 KLNNIGSFGD 10 Unmodified _KLNNIGSFGD_ 0 0 0 REV__ENSG00000186105|ENST00000334994|LRRC70 REV__ENSG00000186105|ENST00000334994|LRRC70 MULTI-MSMS UPN48_class_I_Rep_3 7 532.7721557617188 2 532.772188 1063.52982 0.4418 0.00023538 0.24418 0.00013009 0.68598 0.00036547 532.7721879024973 47.143 0.38284 50.779 50.506 50.889 3.6363 34 24 2 0 0 0 0.4965 1 9188 9188 12.241 2.0901 1 138680 + 17973 20875 11285 11291 21603 21603 0.0005996457523451681 KLNPDKVTTR 10 Unmodified _KLNPDKVTTR_ 0 0 0 REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3427124023438 2 586.343312 1170.67207 0.40796 0.0002392 -3.6369 -0.0021325 -3.229 -0.0018933 586.3421614871813 108.46 0.075722 112.09 112.04 112.11 3.6313 17 5 4 0 0 0 0.56078 1 26247 26247 3.2813 0 1 1198900 + 17974 23332 11286 11292 21604 21604 0.09356177317408765 KLNPDKVTTR 10 Unmodified _KLNPDKVTTR_ 0 0 0 REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 586.343312 1170.67207 0.50227 0.0002945 -4.3413 -0.0025455 -3.839 -0.002251 586.3425375377391 108.46 0.10683 112.1 112.03 112.13 3.6355 0.030697 -0.0007105 NaN 3.2813 21 7 5 NaN NaN NaN NaN 0 NaN NaN 0 2359300 + 17975 23332 11286 11292 0.09356177317408765 KLNPDKVTTR 10 Unmodified _KLNPDKVTTR_ 0 0 0 REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 586.343312 1170.67207 0.50743 0.00029753 -3.5814 -0.0020999 -3.074 -0.0018024 586.3424355059349 108.48 0.079056 112.02 111.95 112.03 3.5382 -0.05446 0.00018061 NaN 3.2813 19 6 4 NaN NaN NaN NaN 0 NaN NaN 0 1719200 + 17976 23332 11286 11292 0.09356177317408765 KLNPDKVTTR 10 Unmodified _KLNPDKVTTR_ 0 0 0 REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 586.343312 1170.67207 0.40796 0.0002392 -3.6369 -0.0021325 -3.229 -0.0018933 586.3421614871813 108.46 0.075722 112.09 112.04 112.11 3.6313 0.023763 0.00011551 NaN 3.2813 17 5 4 NaN NaN NaN NaN 0 NaN NaN 0 1198900 + 17977 23332 11286 11292 0.09356177317408765 KLNRILIQTF 10 Unmodified _KLNRILIQTF_ 0 0 0 L1MC5_dup5842|chr6:143566604-143566983:-|1.1525040553464632|0.006897037358511|7.38|151.0|1|1|sense L1MC5_dup5842|chr6:143566604-143566983:-|1.1525040553464632|0.006897037358511|7.38|151.0|1|1|sense L1MC5_dup5842|chr6:143566604-143566983:-|1.1525040553464632|0.006897037358511|7.38|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 623.3881225585938 2 623.387522 1244.76049 NaN NaN NaN NaN NaN NaN NaN 103.8 1 107.56 107.06 108.06 3.7627 0 0 0 0.53105 1 25517 25517 3.2813 0 1 17978 11690 11287 11293 21605 21605 0.14790217627864877 KLPDWPSH 8 Unmodified _KLPDWPSH_ 0 0 0 REV__ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|9|intron REV__ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|9|intron MULTI-MSMS UPN47_class_I_Rep_3 4 490.253662109375 2 490.253434 978.492316 -0.35455 -0.00017382 -0.34036 -0.00016686 -0.69491 -0.00034068 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 1 6568 6568 2.0598 0 1 61780 + 17979 17608 11288 11294 21606 21606 0.002209181002854166 KLPFTPLSY 9 Unmodified _KLPFTPLSY_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MSMS UPN46_class_I_Rep_3 1 533.3026733398438 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 70.563 1 70.563 70.063 71.063 0 0 0 0 0.098423 1 16222 16222 24.991 11.085 1 17980 3279 11289 11295 21607 21607 0.060921016254724236 KLPHPSIPV 9 Unmodified _KLPHPSIPV_ 0 0 0 REV__L1PA5_dup6808|chrX:63446464-63452482:-|1.1153272597325974|0.0841930431535194|3.73|151.0|186|1|anti-sense REV__L1PA5_dup6808|chrX:63446464-63452482:-|1.1153272597325974|0.0841930431535194|3.73|151.0|186|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.3006591796875 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 107.48 1 111.01 110.51 111.51 3.5345 0 0 0 0.28335 1 26009 26009 11.64 6.4096 1 + 17981 29794 11290 11296 21608 21608 0.09746941065191095 KLPHSGWE 8 Unmodified _KLPHSGWE_ 0 0 0 REV__L1MA2_dup5722|chr12:11042929-11045574:+|1.8624851693326208|0.1641776865214716|3.5|151.0|127|2|anti-sense REV__L1MA2_dup5722|chr12:11042929-11045574:+|1.8624851693326208|0.1641776865214716|3.5|151.0|127|2|anti-sense MSMS UPN48_class_I_Rep_1 5 476.828125 2 477.245609 952.476666 NaN NaN NaN NaN NaN NaN NaN 109.07 1 112.71 112.21 113.21 3.6321 0 0 0 0.40404 1 26467 26467 5.2307 0 1 + 17982 24902 11291 11297 21609 21609 -0.0014736841676494805 KLPKALVHLF 10 Unmodified _KLPKALVHLF_ 0 0 0 REV__Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense REV__Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 583.3772583007812 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 48.494 1 48.494 47.994 48.994 0 0 0 0 0.53105 1 10109 10109 3.9444 1.8846 1 + 17983 17283 11292 11298 21610 21610 0.1625203795008474 KLPKALVHLF 10 Unmodified _KLPKALVHLF_ 0 0 0 REV__Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense REV__Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|75|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 583.3766479492188 2 583.376426 1164.7383 0.044914 2.6202E-05 1.4286 0.00083341 1.4735 0.00085961 583.3770261903222 41.252 0.25903 44.618 44.543 44.802 3.3655 33 22 2 0 0 0 0.56309 1 8283 8283 1.6526 0.96225 1 66015 + 17984 17283 11292 11298 21611 21611 0.1625203795008474 KLPKVPEMKLP 11 Unmodified _KLPKVPEMKLP_ 0 0 0 nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX nc|ENSG00000105227|Q9BXM0-3|PRX nc|ENSG00000105227|Q9BXM0-3|PRX MULTI-SECPEP UPN47_class_I_Rep_3 4 427.3027648925781 3 427.265065 1278.77336 -0.53511 -0.00022863 -0.34957 -0.00014936 -0.88468 -0.00037799 427.26518269741484 63.634 0.80967 66.808 66.356 67.166 3.1741 167 67 3 0 0 0 22.551 1 15047 15047 0.45452 0.45452 1 164960 17985 1722 11293 11299 21612 21612 0.14512912695772684 KLPLLMYP 8 Unmodified _KLPLLMYP_ 0 0 0 REV__Tigger3b_dup5709|chr17:29750879-29751133:-|1.4281674320657989|0.0105235258456965|7.08|151.0|4|2|sense REV__Tigger3b_dup5709|chr17:29750879-29751133:-|1.4281674320657989|0.0105235258456965|7.08|151.0|4|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 488.2923583984375 2 487.790807 973.56706 0.2881 0.00014053 -0.024552 -1.1976E-05 0.26355 0.00012856 487.7906303798154 91.309 0.44888 91.309 91.11 91.559 0 71 40 3 0 0 0 0.82752 1 22010 22010 2.5775 0 1 843810 + 17986 32758 11294 11300 21613 21613 0.07921964587285402 KLPLLMYP 8 Unmodified _KLPLLMYP_ 0 0 0 REV__Tigger3b_dup5709|chr17:29750879-29751133:-|1.4281674320657989|0.0105235258456965|7.08|151.0|4|2|sense REV__Tigger3b_dup5709|chr17:29750879-29751133:-|1.4281674320657989|0.0105235258456965|7.08|151.0|4|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7906494140625 2 487.790807 973.56706 0.25506 0.00012441 -0.036802 -1.7952E-05 0.21826 0.00010646 487.79066720683704 87.607 0.64142 91.335 91.06 91.701 3.7279 129 74 2 0 0 0 0.82752 1 20835 20835 2.5775 0 1 425100 + 17987 32758 11294 11300 21614 21614 0.07921964587285402 KLPNFGFVVF 10 Unmodified _KLPNFGFVVF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN46_class_I_Rep_3 1 584.3314819335938 2 584.331685 1166.64882 NaN NaN NaN NaN NaN NaN NaN 90.428 1 90.428 89.928 90.928 0 0 0 0 0.53105 1 21808 21808 18.146 2.2992 1 17988 3109;3417 11295 11301 21615 21615 0.07215783270748943 KLPNPVLLGF 10 Unmodified _KLPNPVLLGF_ 0 0 0 MER21B_dup557|chr3:129718985-129719712:+|1.028988457013287|0.0099408539269994|6.69|151.0|30|1|anti-sense MER21B_dup557|chr3:129718985-129719712:+|1.028988457013287|0.0099408539269994|6.69|151.0|30|1|anti-sense MER21B_dup557|chr3:129718985-129719712:+|1.028988457013287|0.0099408539269994|6.69|151.0|30|1|anti-sense MSMS UPN46_class_I_Rep_3 1 549.7572021484375 2 549.33951 1096.66447 NaN NaN NaN NaN NaN NaN NaN 68.952 1 68.952 68.452 69.452 0 0 0 0 0.53105 1 15773 15773 1.6526 0 1 17989 15876 11296 11302 21616 21616 0.1200006978779129 KLPQLEALLPP 11 Unmodified _KLPQLEALLPP_ 0 0 0 ENST00000480425.1_1_15:78572367-78572799:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 ENST00000480425.1_1_15:78572367-78572799:+|nuORF ENST00000480425.1_1_15:78572367-78572799:+|nuORF MSMS UPN47_class_I_Rep_2 3 406.9185485839844 3 406.920063 1217.73836 NaN NaN NaN NaN NaN NaN NaN 104.95 1 108.48 107.98 108.98 3.5327 0 0 0 0.38417 1 25474 25474 1.3296 0 1 17990 3174 11297 11303 21617 21617 0.1381999315944995 KLPRLRYFF 9 Unmodified _KLPRLRYFF_ 0 0 0 MSTA_dup7888|chr6:151412571-151412992:-|1.0493748349420833|0.1237756951819683|3.08|151.0|15|3|sense MSTA_dup7888|chr6:151412571-151412992:-|1.0493748349420833|0.1237756951819683|3.08|151.0|15|3|sense MSTA_dup7888|chr6:151412571-151412992:-|1.0493748349420833|0.1237756951819683|3.08|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 620.3712158203125 2 620.371675 1238.7288 NaN NaN NaN NaN NaN NaN NaN 86.419 1 89.859 89.359 90.359 3.4407 0 0 0 0.40038 1 21494 21494 0.6015 0.14316 1 17991 16533 11298 11304 21618 21618 0.11898269664584404 KLPSHATHSL 10 Unmodified _KLPSHATHSL_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;chr13:32375406-32376670|142|10.07|0.4|4.65|+|ENST00000665585|BRCA2,BRCA2 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS UPN47_class_I_Rep_2 3 545.8040771484375 2 545.803823 1089.59309 0.37291 0.00020354 -1.4234 -0.00077688 -1.0505 -0.00057334 545.8030589815012 69.364 0.15757 72.64 72.544 72.702 3.2761 14 11 2 0 0 0 0.56354 1 16849 16849 1.3295 0.13619 1 108410 17992 3145 11299 11305 21619 21619 0.05187950083131909 KLPTKEKYIQ 10 Unmodified _KLPTKEKYIQ_ 0 0 0 REV__L1PA13_dup1191|chr3:11444571-11445695:+|3.7305111976521066|0.0538894147548366|6.11|151.0|3|1|sense REV__L1PA13_dup1191|chr3:11444571-11445695:+|3.7305111976521066|0.0538894147548366|6.11|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.8748168945312 2 624.371538 1246.72852 0.60521 0.00037788 0.57726 0.00036042 1.1825 0.0007383 624.3717150297052 91.242 0.89234 95.105 94.773 95.666 3.8634 233 128 2 0 0 0 0.56118 1 21719 21719 2.9952 0.26005 1 13826000 + 17993 29085 11300 11306 21620 21620 0.11502805154077578 KLQAPQPQL 9 Unmodified _KLQAPQPQL_ 0 0 0 REV__AluJb_dup2377|chr1:26758303-26758647:+|1.3786207584175247|0.0197503006114131|6.13|151.0|21|3|anti-sense REV__AluJb_dup2377|chr1:26758303-26758647:+|1.3786207584175247|0.0197503006114131|6.13|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.8030090332031 2 511.803291 1021.59203 -0.19276 -9.8653E-05 -0.11474 -5.8724E-05 -0.3075 -0.00015738 511.803022879563 40.495 0.63926 43.732 43.37 44.009 3.2372 48 38 2 0 0 0 0.41259 1 8154 8154 7.2892 1.5574 1 66291 + 17994 16932 11301 11307 21621 21621 0.08209735714228827 KLQDGVHII 9 Unmodified _KLQDGVHII_ 0 0 0 nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11 nc|ENSG00000183520|Q9Y3A2-2|UTP11 nc|ENSG00000183520|Q9Y3A2-2|UTP11 MULTI-MSMS UPN47_class_I_Rep_1 2 511.80340576171875 2 511.803291 1021.59203 -0.1662 -8.5064E-05 -0.34362 -0.00017586 -0.50982 -0.00026093 511.80304572791067 39.766 0.56945 43.433 43.186 43.756 3.6668 57 41 2 0 0 0 0.35123 1 7838 7838 10.8 2.644 1 81340 17995 5003 11302 11308 21622 21622 0.08209735714228827 KLQDLAWP 8 Unmodified _KLQDLAWP_ 0 0 0 HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 485.81158447265625 2 485.77146 969.528367 0.13605 6.609E-05 -0.91252 -0.00044327 -0.77647 -0.00037718 485.7726265162304 116.59 0.026772 120.21 120.2 120.22 3.6254 4 2 2 0 0 0 0.72333 1 28394 28394 0.79363 0 1 14439 17996 7902 11303 11309 21623 21623 0.042383752771115724 KLQDQIFNL 9 Unmodified _KLQDQIFNL_ 0 0 0 nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10 nc|ENSG00000148908|O43665-2|RGS10 nc|ENSG00000148908|O43665-2|RGS10 MULTI-MSMS UPN47_class_I_Rep_1 2 559.8138427734375 2 559.813856 1117.61316 0.40624 0.00022742 0.040784 2.2831E-05 0.44703 0.00025025 559.8137472500214 61.674 0.87117 65.042 64.763 65.634 3.3681 133 64 3 0 0 0 0.039218 1 14473 14473 53.317 13.078 1 293680 17997 3523 11304 11310 21624 21624 0.05905701023084475 KLQDQIFNL 9 Unmodified _KLQDQIFNL_ 0 0 0 nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10 nc|ENSG00000148908|O43665-2|RGS10 nc|ENSG00000148908|O43665-2|RGS10 MULTI-MSMS UPN47_class_I_Rep_2 3 559.8139038085938 2 559.813856 1117.61316 0.451 0.00025247 -0.27133 -0.0001519 0.17967 0.00010058 559.8136601523892 62.057 0.61822 65.316 64.949 65.567 3.2594 91 43 3 0 0 0 0.086321 2 14591 14591;14641 37.075 7.2341 1 422450 17998 3523 11304 11310 21625;21626 21625 0.05905701023084475 KLQDQIFNL 9 Unmodified _KLQDQIFNL_ 0 0 0 nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10 nc|ENSG00000148908|O43665-2|RGS10 nc|ENSG00000148908|O43665-2|RGS10 MULTI-MSMS UPN47_class_I_Rep_3 4 559.8135986328125 2 559.813856 1117.61316 0.39706 0.00022228 -0.17589 -9.8466E-05 0.22116 0.00012381 559.8136929220916 62.123 0.92975 65.289 64.864 65.794 3.1667 111 62 2 0 0 0 0.21139 1 14653 14653 19.626 6.0111 1 320750 17999 3523 11304 11310 21627 21627 0.05905701023084475 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS UPN47_class_I_Rep_1 2 560.323974609375 2 560.324057 1118.63356 0.39479 0.00022121 -0.095327 -5.3414E-05 0.29946 0.00016779 560.3239887711211 62.646 0.96056 66.005 65.595 66.555 3.3595 133 63 3 0 0 0 0.0052635 3 14788 14749;14788;14828 97.741 42.238 1 578840 18000 3181 11305 11311 21628;21629;21630 21629 0.07898871682891695 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MSMS UPN47_class_I_Rep_1 2 560.32421875 2 560.324057 1118.63356 NaN NaN NaN NaN NaN NaN NaN 62.964 1 66.323 65.823 66.823 3.3595 0 0 0 0.0024992 1 14870 14870 59.052 6.7841 1 18001 3181 11305 11311 21631 21631 0.07898871682891695 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS UPN47_class_I_Rep_2 3 560.3242797851562 2 560.324057 1118.63356 0.42654 0.000239 -0.04716 -2.6425E-05 0.37938 0.00021257 560.3239671273353 63.039 0.91433 66.295 65.836 66.751 3.2558 149 60 3 0 0 0 0.014369 5 14915 14871;14915;14957;14998;15037 67.081 23.099 1 356290 18002 3181 11305 11311 21632;21633;21634;21635;21636 21633 0.07898871682891695 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS UPN47_class_I_Rep_3 4 560.32421875 2 560.324057 1118.63356 0.41568 0.00023291 0.00062169 3.4835E-07 0.4163 0.00023326 560.3240701325327 63.088 1.3587 66.258 65.851 67.21 3.1698 179 101 3 0 0 0 0.01765 7 14978 14927;14978;15019;15059;15099;15135;15174 64.927 18.813 1 344110 18003 3181 11305 11311 21637;21638;21639;21640;21641;21642;21643 21638 0.07898871682891695 KLQELNYNL 9 Unmodified _KLQELNYNL_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_2 3 567.8114013671875 2 567.811313 1133.60807 0.43835 0.0002489 -0.26447 -0.00015017 0.17388 9.8733E-05 567.8111042887855 50.087 0.48544 53.43 53.176 53.661 3.3431 40 25 2 0 0 0 0.2924 2 10962 10962;10973 14.405 4.2548 1 91989 18004 2128 11306 11312 21644;21645 21644 0.04661397160452907 KLQELNYNL 9 Unmodified _KLQELNYNL_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_3 4 567.8119506835938 2 567.811313 1133.60807 0.49335 0.00028013 -0.63885 -0.00036275 -0.14551 -8.262E-05 567.8108489825768 50.159 0.5192 53.385 53.191 53.71 3.2262 44 28 2 0 0 0 0.35123 2 11094 11094;11114 10.8 2.644 1 96510 18005 2128 11306 11312 21646;21647 21646 0.04661397160452907 KLQFWHKNG 9 Unmodified _KLQFWHKNG_ 0 0 0 REV__Tigger1_dup1731|chr2:174136975-174138710:-|1.191955505785291|0.0853400322853645|3.8|151.0|98|3|anti-sense REV__Tigger1_dup1731|chr2:174136975-174138710:-|1.191955505785291|0.0853400322853645|3.8|151.0|98|3|anti-sense MSMS UPN48_class_I_Rep_3 7 579.3123168945312 2 579.314358 1156.61416 NaN NaN NaN NaN NaN NaN NaN 43.404 1 47.043 46.543 47.543 3.6385 0 0 0 0.39518 1 8072 8072 1.8442 0.19162 1 + 18006 32386 11307 11313 21648 21648 0.0421196018264709 KLQHLKKM 8 Unmodified _KLQHLKKM_ 0 0 0 REV__L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|63|2|sense REV__L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|63|2|sense MSMS UPN47_class_I_Rep_1 2 513.31787109375 2 513.318054 1024.62156 NaN NaN NaN NaN NaN NaN NaN 40.703 1 44.375 43.875 44.875 3.6719 0 0 0 0.40746 1 8099 8099 0.69038 0 1 + 18007 29860 11308 11314 21649 21649 0.1102297645870749 KLQHLKKM 8 Unmodified _KLQHLKKM_ 0 0 0 REV__L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|63|2|sense REV__L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|63|2|sense MSMS UPN48_class_I_Rep_1 5 513.3175659179688 2 513.318054 1024.62156 NaN NaN NaN NaN NaN NaN NaN 46.006 1 49.522 49.022 50.022 3.5162 0 0 0 0.40625 1 8935 8935 2.3027 0 1 + 18008 29860 11308 11314 21650 21650 0.1102297645870749 KLQKIIWPW 9 Unmodified _KLQKIIWPW_ 0 0 0 AluSz6_dup33754|chr13:28139972-28140218:-|1.789422199875334|0.0235994647995989|6.24|151.0|5|2|sense AluSz6_dup33754|chr13:28139972-28140218:-|1.789422199875334|0.0235994647995989|6.24|151.0|5|2|sense AluSz6_dup33754|chr13:28139972-28140218:-|1.789422199875334|0.0235994647995989|6.24|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 606.3703002929688 2 606.368601 1210.72265 NaN NaN NaN NaN NaN NaN NaN 88.273 1 88.273 87.773 88.773 0 0 0 0 0.4007 1 21190 21190 0.52476 0 1 18009 387 11309 11315 21651 21651 0.12571751433074496 KLQKLFRLIAK 11 Unmodified _KLQKLFRLIAK_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|131|2|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|131|2|sense MSMS UPN48_class_I_Rep_2 6 453.3050537109375 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 112.57 1 116.23 115.73 116.73 3.6648 0 0 0 0.38417 1 26827 26827 0.40827 0.31342 1 + 18010 29417 11310 11316 21652 21652 0.23275331858417303 KLQKRVRELEQ 11 Unmodified _KLQKRVRELEQ_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS UPN47_class_I_Rep_3 4 476.62152099609375 3 476.287808 1425.8416 -0.81592 -0.00038861 -0.3495 -0.00016646 -1.1654 -0.00055508 476.2874766748384 14.765 0.32909 18.135 18.009 18.338 3.3697 84 40 3 0 0 0 0.68132 1 635 635 0.40827 0 1 61099 18011 4298 11311 11317 21653 21653 0.14570873599996048 KLQKRWDWRWK 11 Unmodified _KLQKRWDWRWK_ 0 0 0 nc|ENSG00000166321|Q86X67-4|NUDT13 nc|ENSG00000166321|Q86X67-4|NUDT13 nc|ENSG00000166321|Q86X67-4|NUDT13 MSMS UPN46_class_I_Rep_3 1 543.9749755859375 3 543.975676 1628.9052 NaN NaN NaN NaN NaN NaN NaN 101.08 1 101.08 100.58 101.58 0 0 0 0 0.38417 1 24658 24658 0 0 1 18012 16741 11312 11318 21654 21654 0.11590278827702605 KLQKWLKAMT 10 Unmodified _KLQKWLKAMT_ 0 0 0 REV__L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|15|1|sense REV__L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 623.8704223632812 2 623.870651 1245.72675 NaN NaN NaN NaN NaN NaN NaN 96.694 1 100.31 99.806 100.81 3.6124 0 0 0 0.53105 1 23305 23305 1.3295 0.80477 1 + 18013 24821 11313 11319 21655 21655 0.11371472864470888 KLQLSENYL 9 Unmodified _KLQLSENYL_ 0 0 0 REV__ENSG00000155827|ENST00000389120|RNF20 REV__ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS UPN47_class_I_Rep_3 4 554.3052368164062 2 554.305864 1106.59717 0.44295 0.00024553 -0.34691 -0.00019229 0.096046 5.3239E-05 554.3055303748595 69.709 0.74385 72.913 72.675 73.419 3.2044 107 58 2 0 0 0 0.43153 1 16952 16952 6.2058 0 1 208980 + 18014 19774 11314 11320 21656 21656 0.048139947861727705 KLQNKYLILIW 11 Unmodified _KLQNKYLILIW_ 0 0 0 REV__L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|20|1|sense REV__L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|20|1|sense MSMS UPN48_class_I_Rep_2 6 477.9614562988281 3 477.962262 1430.86496 NaN NaN NaN NaN NaN NaN NaN 98.646 1 102.42 101.92 102.92 3.7707 0 0 0 0.38417 1 23432 23432 0.50596 0.34663 1 + 18015 30371 11315 11321 21657 21657 0.16675919384601912 KLQPKEEH 8 Unmodified _KLQPKEEH_ 0 0 0 REV__nc|ENSG00000152061|Q5R372-4|RABGAP1L REV__nc|ENSG00000152061|Q5R372-4|RABGAP1L MSMS UPN46_class_I_Rep_3 1 504.8089904785156 2 504.777274 1007.53999 NaN NaN NaN NaN NaN NaN NaN 37.998 1 37.998 37.498 38.498 0 0 0 0 0.40643 1 7197 7197 2.0598 0 1 + 18016 19670 11316 11322 21658 21658 0.03652572300461543 KLQQYYLKK 9 Unmodified _KLQQYYLKK_ 0 0 0 REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS UPN46_class_I_Rep_3 1 606.361083984375 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 26.994 1 26.994 26.494 27.494 0 0 0 0 0.4007 1 3945 3945 0.52476 0 1 + 18017 20934 11317 11323 21659 21659 0.1104683984519852 KLREEARRKKY 11 Unmodified _KLREEARRKKY_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS UPN48_class_I_Rep_1 5 493.2525939941406 3 492.963436 1475.86848 NaN NaN NaN NaN NaN NaN NaN 72.243 1 75.716 75.216 76.216 3.4732 0 0 0 0.38417 1 16943 16943 0.094841 0 1 18018 2508 11318 11324 21660 21660 0.149579822111491 KLRFASSLVF 10 Unmodified _KLRFASSLVF_ 0 0 0 REV__HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|17|1|anti-sense REV__HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|17|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 0.21978 0.00012843 0.13052 7.6271E-05 0.35031 0.0002047 584.3478496659224 28.018 0.22031 28.018 27.84 28.06 0 26 15 2 0 0 0 0.56333 1 4240 4240 1.4819 0.15237 1 203000 + 18019 23328 11319 11325 21661 21661 0.10450570673765469 KLRGVLAL 8 Unmodified _KLRGVLAL_ 0 0 0 ENSG00000188037|ENST00000343257|CLCN1 ENSG00000188037|ENST00000343257|CLCN1 ENSG00000188037|ENST00000343257|CLCN1 MSMS UPN48_class_I_Rep_1 5 435.29998779296875 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 68.799 1 72.254 71.754 72.754 3.4548 0 0 0 0.40746 1 15912 15912 0.69038 0 1 18020 5215 11320 11326 21662 21662 0.14627262273336328 KLRHVEELSAK 11 Unmodified _KLRHVEELSAK_ 0 0 0 Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|60|2|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|60|2|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|60|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.5915832519531 3 437.257738 1308.75138 -0.043271 -1.892E-05 -0.88784 -0.00038822 -0.93111 -0.00040714 437.25739205015765 91.003 0.13435 94.629 94.538 94.672 3.626 26 16 3 0 0 0 0.68024 1 21860 21860 0.50596 0.09769 1 180050 18021 7980 11321 11327 21663 21663 0.10935824271541605 KLRHVEELSAK 11 Unmodified _KLRHVEELSAK_ 0 0 0 Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|60|2|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|60|2|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|60|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 437.257738 1308.75138 0.1524 6.6639E-05 -1.0381 -0.0004539 -0.88567 -0.00038727 437.25723947109645 94.671 0.34531 94.671 94.518 94.864 0 0.021222 -3.9094E-05 NaN 0.50596 55 37 3 NaN NaN NaN NaN 0 NaN NaN 0 439280 18022 7980 11321 11327 0.10935824271541605 KLRKAAPP 8 Unmodified _KLRKAAPP_ 0 0 0 REV__ENSG00000249662|ENST00000638486|LINC02218 REV__ENSG00000249662|ENST00000638486|LINC02218 MSMS UPN46_class_I_Rep_3 1 440.79962158203125 2 440.789987 879.565421 NaN NaN NaN NaN NaN NaN NaN 72.7 1 72.7 72.2 73.2 0 0 0 0 0.40746 1 16816 16816 0.69038 0 1 + 18023 21351 11322 11328 21664 21664 0.12082091613547163 KLRLQQQQR 9 Unmodified _KLRLQQQQR_ 0 0 0 ENST00000473467.5_1_2:74685729-74687181:+|nuORF;ENST00000441673.2_1_2:74684653-74687805:+|nuORF;ENST00000452361.5_1_2:74684918-74687805:+|nuORF;ENSG00000239779|ENST00000233615|WBP1 ENST00000473467.5_1_2:74685729-74687181:+|nuORF ENST00000473467.5_1_2:74685729-74687181:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 599.3612670898438 2 599.36237 1196.71019 0.048403 2.9011E-05 -0.79906 -0.00047893 -0.75066 -0.00044992 599.3618887936778 12.725 0.21824 16.113 16.038 16.257 3.388 33 25 2 0 0 0 0.50088 1 129 129 0.52476 0 1 26538 18024 5701 11323 11329 21665 21665 0.11970108022751447 KLRLRGLPRC 10 Unmodified _KLRLRGLPRC_ 0 0 0 L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|290|2|anti-sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|290|2|anti-sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|290|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 404.5888977050781 3 404.588765 1210.74446 0.050181 2.0303E-05 0.28985 0.00011727 0.34003 0.00013757 404.58878312434535 37.139 1.2605 40.841 40.173 41.434 3.7022 282 140 3 0 0 0 0.56444 2 6394 6145;6394 0.69767 0.69767 1 242010 18025 14189 11324 11330 21666;21667 21667 0.14752232910018392 KLRRRYRYFPY 11 Unmodified _KLRRRYRYFPY_ 0 0 0 L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|150|3|anti-sense L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|150|3|anti-sense L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|150|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 405.932861328125 4 405.233576 1616.9052 0.0047975 1.9441E-06 -0.1844 -7.4727E-05 -0.17961 -7.2783E-05 405.73458095657264 39.13 0.044239 39.13 39.098 39.142 0 12 5 3 0 0 0 22.551 1 7502 7502 0.094841 0 1 71635 18026 11216 11325 11331 21668 21668 0.12142278827741393 KLRVDPVNF 9 Unmodified _KLRVDPVNF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN48_class_I_Rep_3 7 544.3160400390625 2 544.316566 1086.61858 NaN NaN NaN NaN NaN NaN NaN 46.149 1 49.785 49.285 50.285 3.6369 0 0 0 0.3967 1 8916 8916 1.4819 0.28856 1 + 18027 5235 11326 11332 21669 21669 0.07873424605554646 KLSAKSRTQ 9 Unmodified _KLSAKSRTQ_ 0 0 0 L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|148|3|sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|148|3|sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|148|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.8038635253906 2 509.803823 1017.59309 0.321 0.00016365 -0.19111 -9.7428E-05 0.12989 6.6221E-05 509.8036371465231 76.91 1.1213 80.512 80.1 81.222 3.6016 145 105 2 0 0 0 0.49187 2 18070 18070;18107 1.4819 0 1 324950 18028 13984 11327 11333 21670;21671 21670 0.08499950083125896 KLSCNDITFS 10 Unmodified _KLSCNDITFS_ 0 0 0 Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|86|1|anti-sense Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|86|1|anti-sense Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|86|1|anti-sense MSMS UPN48_class_I_Rep_2 6 564.6925659179688 2 564.273706 1126.53286 NaN NaN NaN NaN NaN NaN NaN 115.96 1 119.62 119.12 120.12 3.6607 0 0 0 0.53105 1 27769 27769 1.3295 0.5359 1 18029 33285 11328 11334 21672 21672 -0.025345283622982606 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS UPN47_class_I_Rep_1 2 523.2977905273438 2 523.298039 1044.58152 0.024589 1.2868E-05 -0.18073 -9.4574E-05 -0.15614 -8.1706E-05 523.2978567002615 45.082 0.75406 48.782 48.504 49.258 3.6999 101 44 3 0 0 0 0.026956 1 9457 9457 59.013 17.173 1 250260 18030 1637 11329 11335 21673 21673 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS UPN47_class_I_Rep_2 3 523.2979736328125 2 523.298039 1044.58152 -0.18067 -9.4544E-05 -0.1105 -5.7823E-05 -0.29117 -0.00015237 523.2978205085706 45.458 0.91731 48.812 48.478 49.395 3.3534 106 57 3 0 0 0 0.065535 1 9603 9603 42.312 12.472 1 251400 18031 1637 11329 11335 21674 21674 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS UPN47_class_I_Rep_3 4 523.297607421875 2 523.298039 1044.58152 0.14171 7.4156E-05 -0.32783 -0.00017155 -0.18612 -9.7398E-05 523.2977680025728 45.564 0.73553 48.808 48.503 49.238 3.2441 102 44 3 0 0 0 0.10509 2 9668 9668;9728 32.898 15.455 1 288530 18032 1637 11329 11335 21675;21676 21675 0.061017082691250835 KLSFPSEGEI 10 Unmodified _KLSFPSEGEI_ 0 0 0 L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|86|3|sense L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|86|3|sense L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|86|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.7904052734375 2 553.790047 1105.56554 0.43072 0.00023853 0.96951 0.00053691 1.4002 0.00077544 553.7899876279793 64.801 1.0263 67.98 67.552 68.579 3.1795 174 81 3 0 0 0 0.44401 1 15569 15569 16.149 3.1066 1 347970 18033 13807 11330 11336 21677 21677 0.01698002032230761 KLSISHEIVV 10 Unmodified _KLSISHEIVV_ 0 0 0 nc|ENSG00000268235|B4DZS4-2|TCP11X1;ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2 nc|ENSG00000268235|B4DZS4-2|TCP11X1 nc|ENSG00000268235|B4DZS4-2|TCP11X1 MULTI-SECPEP UPN47_class_I_Rep_3 4 562.334716796875 2 562.837331 1123.66011 0.504 0.00028367 -1.072 -0.00060335 -0.56798 -0.00031968 562.8363901032795 109.89 0.42995 113.42 113.38 113.81 3.5347 82 64 2 0 0 0 0.84575 1 27012 27012 0.40072 0 1 220050 18034 5630 11331 11337 21678 21678 0.1032256057419545 KLSKVNNLY 9 Unmodified _KLSKVNNLY_ 0 0 0 L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|20|2|sense L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|20|2|sense L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 539.8162231445312 2 539.816399 1077.61824 NaN NaN NaN NaN NaN NaN NaN 53.908 1 57.491 56.991 57.991 3.5836 0 0 0 0.22485 1 11281 11281 14.838 0.93222 1 18035 11750 11332 11338 21679 21679 0.0825400488570267 KLSLPLYLI 9 Unmodified _KLSLPLYLI_ 0 0 0 ENST00000475980.1_1_1:103467061-103468344:-|nuORF ENST00000475980.1_1_1:103467061-103468344:-|nuORF ENST00000475980.1_1_1:103467061-103468344:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 530.3444213867188 2 530.344261 1058.67397 0.53545 0.00028397 -0.29642 -0.00015721 0.23902 0.00012676 530.3441962262403 77.351 0.13744 80.953 80.915 81.053 3.6016 16 10 2 0 0 0 0.37599 1 18270 18270 9.3831 0 1 85652 18036 6962 11333 11339 21680 21680 0.14697838073311686 KLSSLVLLGV 10 Unmodified _KLSSLVLLGV_ 0 0 0 REV__L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|177|3|anti-sense REV__L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|177|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.839111328125 2 514.839342 1027.66413 -0.035452 -1.8252E-05 0.24322 0.00012522 0.20776 0.00010697 514.8393916925186 47.333 0.60964 50.683 50.343 50.952 3.3504 68 42 2 0 0 0 0.56033 1 10072 10072 3.5965 0 1 123850 + 18037 30473 11334 11340 21681 21681 0.15140650067951356 KLSVKLKVKVK 11 Unmodified _KLSVKLKVKVK_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|8|intron;nc|ENSG00000051341|O75417-2|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MSMS UPN48_class_I_Rep_2 6 635.4520263671875 2 635.452665 1268.89078 NaN NaN NaN NaN NaN NaN NaN 60.859 1 64.337 63.837 64.837 3.4785 0 0 0 0.38417 1 13472 13472 0 0 1 18038 919 11335 11341 21682 21682 0.26708813626851224 KLTAIELKL 9 Unmodified _KLTAIELKL_ 0 0 0 REV__ENSG00000148513|ENST00000361713|ANKRD30A REV__ENSG00000148513|ENST00000361713|ANKRD30A MULTI-MSMS UPN47_class_I_Rep_3 4 514.83935546875 2 514.839342 1027.66413 0.18301 9.4223E-05 -0.11298 -5.8165E-05 0.070037 3.6058E-05 514.8393097009358 47.563 0.51274 50.803 50.339 50.852 3.2405 54 35 2 0 0 0 0.41587 1 10207 10207 7.1017 0 1 152970 + 18039 19592 11336 11342 21683 21683 0.15140650067928618 KLTGYKTKSLL 11 Unmodified _KLTGYKTKSLL_ 0 0 0 nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A nc|ENSG00000128655|Q9HCR9-2|PDE11A nc|ENSG00000128655|Q9HCR9-2|PDE11A MULTI-MSMS UPN48_class_I_Rep_1 5 626.8892211914062 2 626.387188 1250.75982 0.42783 0.00026799 1.3515 0.00084656 1.7793 0.0011145 626.3883974310388 103.5 0.31724 107.12 106.84 107.16 3.6209 85 45 2 0 0 0 0.65821 1 24894 24894 2.4985 0 1 51252000 18040 2598 11337 11343 21684 21684 0.14447378188197035 KLTHTMHRH 9 Unmodified _KLTHTMHRH_ 0 0 0 REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|69|2|sense REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|69|2|sense MSMS UPN48_class_I_Rep_1 5 580.8090209960938 2 580.808916 1159.60328 NaN NaN NaN NaN NaN NaN NaN 42.232 1 45.74 45.24 46.24 3.5079 0 0 0 0.39428 1 7787 7787 2.0598 0 1 + 18041 29296 11338 11344 21685 21685 0.029862345367064336 KLTIGRRQR 9 Unmodified _KLTIGRRQR_ 0 0 0 REV__L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|38|3|sense REV__L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|38|3|sense MSMS UPN48_class_I_Rep_3 7 564.3590087890625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 94.943 1 98.844 98.344 99.344 3.9016 0 0 0 0.39598 1 22503 22503 1.6526 0.96225 1 + 18042 28423 11339 11345 21686 21686 0.14642429230934795 KLTIISGCLF 10 Unmodified _KLTIISGCLF_ 0 0 0 nc|ENSG00000185716|Q8NHV5-3|MOSMO;ENSG00000185716|ENST00000542527|MOSMO nc|ENSG00000185716|Q8NHV5-3|MOSMO nc|ENSG00000185716|Q8NHV5-3|MOSMO MSMS UPN47_class_I_Rep_2 3 547.8150634765625 2 547.817553 1093.62055 NaN NaN NaN NaN NaN NaN NaN 115.55 1 119.05 118.55 119.55 3.5039 0 0 0 0.53105 1 28174 28174 1.6526 0.85899 1 18043 5116 11340 11346 21687 21687 0.07748717299136842 KLTQLQTLI 9 Unmodified _KLTQLQTLI_ 0 0 0 REV__ENST00000526926.5_1_8:144733516-144733585:+|nuORF REV__ENST00000526926.5_1_8:144733516-144733585:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 529.3345947265625 2 529.334424 1056.6543 0.33949 0.0001797 0.0082745 4.38E-06 0.34776 0.00018408 529.3343299640475 53.337 0.73652 56.921 56.519 57.256 3.5836 93 51 2 0 0 0 0.21414 1 11050 11050 19.362 0 1 292910 + 18044 22810 11341 11347 21688 21688 0.12823462062578983 KLTVRQTRHL 10 Unmodified _KLTVRQTRHL_ 0 0 0 REV__ENST00000512839.5_1_4:189321940-189398812:+|nuORF REV__ENST00000512839.5_1_4:189321940-189398812:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 626.8890380859375 2 626.385845 1250.75714 0.49471 0.00030988 1.0226 0.00064055 1.5173 0.00095043 626.3866339962977 104.19 0.23666 107.89 107.8 108.03 3.6991 54 33 2 0 0 0 0.54822 1 24648 24648 5.7319 0 1 61772000 + 18045 22749 11342 11348 21689 21689 0.14178967573889167 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.3109436035156 2 486.310418 970.606283 0.12216 5.9408E-05 -0.13553 -6.5912E-05 -0.013373 -6.5035E-06 486.3102130961527 56.686 0.25516 60.143 59.946 60.201 3.4572 26 19 2 0 0 0 0.16799 1 12953 12953 23.79 3.3752 1 227290 18046 3122 11343 11349 21690 21690 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.81195068359375 2 486.310418 970.606283 0.12584 6.1196E-05 -0.28817 -0.00014014 -0.16233 -7.8943E-05 486.3100593992889 56.922 0.27816 60.379 60.201 60.479 3.4572 37 23 2 0 0 0 0.095207 2 13014 13014;13036 34.932 3.6637 1 256570 18047 3122 11343 11349 21691;21692 21691 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_1 2 486.3102111816406 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 56.785 1 60.242 59.742 60.742 3.4572 0 0 0 0.045102 1 12995 12995 38.615 13.624 1 18048 3122 11343 11349 21693 21693 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_1 2 486.310302734375 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.036 1 60.493 59.993 60.993 3.4572 0 0 0 0.056669 1 13073 13073 34.932 3.6637 1 18049 3122 11343 11349 21694 21694 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_2 3 486.31060791015625 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.035 1 60.335 59.835 60.835 3.3009 0 0 0 0.081356 1 13102 13102 28.495 3.5035 1 18050 3122 11343 11349 21695 21695 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_2 3 486.310302734375 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.131 1 60.422 59.922 60.922 3.2912 0 0 0 0.02515 1 13132 13132 51.415 18.63 1 18051 3122 11343 11349 21696 21696 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_2 3 486.3103942871094 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.155 1 60.446 59.946 60.946 3.2912 0 0 0 0.075414 1 13139 13139 29.841 3.5724 1 18052 3122 11343 11349 21697 21697 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_2 3 486.3100891113281 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.291 1 60.583 60.083 61.083 3.2912 0 0 0 0.098423 1 13181 13181 24.991 3.454 1 18053 3122 11343 11349 21698 21698 0.11980388142524134 KLTVVLEAV 9 Unmodified _KLTVVLEAV_ 0 0 0 ENST00000468564.6_1_22:44584872-44587985:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG ENST00000468564.6_1_22:44584872-44587985:+|nuORF ENST00000468564.6_1_22:44584872-44587985:+|nuORF MSMS UPN47_class_I_Rep_3 4 486.3103942871094 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.733 1 60.901 60.401 61.401 3.1681 0 0 0 0.35904 1 13362 13362 7.609 2.3121 1 18054 3122 11343 11349 21699 21699 0.11980388142524134 KLVCEVSKPG 10 Unmodified _KLVCEVSKPG_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN46_class_I_Rep_3 1 530.2984619140625 2 530.296985 1058.57942 NaN NaN NaN NaN NaN NaN NaN 13.833 1 13.833 13.333 14.333 0 0 0 0 0.53105 1 481 481 1.3295 0.5359 1 18055 3707 11344 11350 21700 21700 0.052469562596797914 KLVCVCPFVP 10 Unmodified _KLVCVCPFVP_ 0 0 0 REV__MER50-int_dup359|chr10:5774417-5774882:+|1.2807556489377354|0.4153413179718294|1.62|151.0|8|2|sense REV__MER50-int_dup359|chr10:5774417-5774882:+|1.2807556489377354|0.4153413179718294|1.62|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 552.2559814453125 2 552.800848 1103.58714 0.37149 0.00020536 -0.78784 -0.00043552 -0.41635 -0.00023016 552.8004758670725 66.705 0.52774 70.062 69.703 70.231 3.3576 56 34 2 0 0 0 0.84575 1 15981 15981 10.074 10.074 1 122520 + 18056 31378 11345 11351 21701 21701 0.0394939225559483 KLVCVCPFVP 10 Unmodified _KLVCVCPFVP_ 0 0 0 REV__MER50-int_dup359|chr10:5774417-5774882:+|1.2807556489377354|0.4153413179718294|1.62|151.0|8|2|sense REV__MER50-int_dup359|chr10:5774417-5774882:+|1.2807556489377354|0.4153413179718294|1.62|151.0|8|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 552.800848 1103.58714 0.3621 0.00020017 -7.8185 -0.0043221 -7.4564 -0.0041219 553.2961962733267 69.79 0.032486 69.79 69.773 69.806 0 -0.13614 -0.0077475 NaN 10.074 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 37534 + 18057 31378 11345 11351 0.0394939225559483 KLVELPYTV 9 Unmodified _KLVELPYTV_ 0 0 0 ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF;ENSG00000092094|ENST00000206542|OSGEP ENST00000556124.3_1_14:20916255-20917133:-|nuORF ENST00000556124.3_1_14:20916255-20917133:-|nuORF MSMS UPN46_class_I_Rep_3 1 531.316162109375 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 66.674 1 66.674 66.174 67.174 0 0 0 0 0.21832 1 15140 15140 15.248 3.0078 1 18058 1386 11346 11352 21702 21702 0.08896370796924202 KLVELPYTV 9 Unmodified _KLVELPYTV_ 0 0 0 ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF;ENSG00000092094|ENST00000206542|OSGEP ENST00000556124.3_1_14:20916255-20917133:-|nuORF ENST00000556124.3_1_14:20916255-20917133:-|nuORF MSMS UPN47_class_I_Rep_3 4 531.3157348632812 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 60.895 1 64.06 63.56 64.56 3.1651 0 0 0 0.075414 1 14330 14330 29.841 2.2118 1 18059 1386 11346 11352 21703 21703 0.08896370796924202 KLVFLYWYRF 10 Unmodified _KLVFLYWYRF_ 0 0 0 REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 478.808349609375 3 478.935936 1433.78598 -0.11034 -5.2846E-05 1.3646 0.00065357 1.2543 0.00060072 479.27107940917045 45.792 0.040436 49.036 49.015 49.056 3.2441 4 2 2 0 0 0 0.56454 1 9735 9735 0.62683 0 1 15027 + 18060 22808 11347 11353 21704 21704 0.08643692150280913 KLVFLYWYRF 10 Unmodified _KLVFLYWYRF_ 0 0 0 REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 478.935936 1433.78598 -0.11034 -5.2846E-05 1.3646 0.00065357 1.2543 0.00060072 479.27107940917045 45.792 0.040436 49.036 49.015 49.056 3.2441 -0.0047206 0.0004233 NaN 0.62683 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 15027 + 18061 22808 11347 11353 0.08643692150280913 KLVFLYWYRF 10 Unmodified _KLVFLYWYRF_ 0 0 0 REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 478.935936 1433.78598 0.14614 6.9991E-05 0.94086 0.00045061 1.087 0.0005206 478.9364685451717 45.332 0.6642 49.09 48.685 49.349 3.7579 0.049146 -0.00018558 NaN 0.62683 91 50 2 NaN NaN NaN NaN 0 NaN NaN 0 199830 + 18062 22808 11347 11353 0.08643692150280913 KLVKKKLKPKR 11 Unmodified _KLVKKKLKPKR_ 0 0 0 REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|41|3|sense REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|41|3|sense MSMS UPN46_class_I_Rep_3 1 455.9960632324219 3 455.99753 1364.97076 NaN NaN NaN NaN NaN NaN NaN 68.201 1 68.201 67.701 68.701 0 0 0 0 0.38417 1 15560 15560 0 0 1 + 18063 28608 11348 11354 21705 21705 0.3028730002070006 KLVKKKQHKKG 11 Unmodified _KLVKKKQHKKG_ 0 0 0 REV__ENSG00000138755|ENST00000264888|CXCL9 REV__ENSG00000138755|ENST00000264888|CXCL9 MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 97.42 1 100.84 100.34 101.34 3.4216 0 0 0 0.38417 1 24149 24149 0.50596 0.34663 1 + 18064 19289 11349 11355 21706 21706 0.22417277055819795 KLVKPKPA 8 Unmodified _KLVKPKPA_ 0 0 0 REV__nc|ENSG00000180263|Q6ZV73-2|FGD6 REV__nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS UPN47_class_I_Rep_2 3 441.2975769042969 2 440.802563 879.590573 -0.19555 -8.6199E-05 -2.0255 -0.00089285 -2.2211 -0.00097905 440.79946215979584 83.162 0.21622 86.574 86.446 86.662 3.4116 46 26 2 0 0 0 0.82752 1 20721 20721 0.69038 0.69038 1 54784 + 18065 20701 11350 11356 21707 21707 0.1459614641612461 KLVKPKPA 8 Unmodified _KLVKPKPA_ 0 0 0 REV__nc|ENSG00000180263|Q6ZV73-2|FGD6 REV__nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 440.802563 879.590573 0.17742 7.8206E-05 -4.5287 -0.0019963 -4.3513 -0.0019181 440.79922776853965 82.802 0.27819 86.509 86.441 86.719 3.7066 -0.032636 -0.00086318 NaN 0.69038 45 36 2 NaN NaN NaN NaN 0 NaN NaN 0 64715 + 18066 20701 11350 11356 0.1459614641612461 KLVKYVAY 8 Unmodified _KLVKYVAY_ 0 0 0 L1ME5_dup1444|chr7:101837989-101838128:-|1.001971026238338|0.0031386822239008|8.32|151.0|7|1|anti-sense L1ME5_dup1444|chr7:101837989-101838128:-|1.001971026238338|0.0031386822239008|8.32|151.0|7|1|anti-sense L1ME5_dup1444|chr7:101837989-101838128:-|1.001971026238338|0.0031386822239008|8.32|151.0|7|1|anti-sense MSMS UPN47_class_I_Rep_1 2 492.3015441894531 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 46.19 1 49.89 49.39 50.39 3.6999 0 0 0 0.40581 1 9774 9774 2.8892 0 1 18067 12965 11351 11357 21708 21708 0.09316422833649085 KLVLIILQ 8 Unmodified _KLVLIILQ_ 0 0 0 nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENSG00000173064|ENST00000682272|HECTD4 nc|ENSG00000173064|Q9Y4D8-2|HECTD4 nc|ENSG00000173064|Q9Y4D8-2|HECTD4 MSMS UPN47_class_I_Rep_2 3 470.3321533203125 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 91.321 1 94.782 94.282 95.282 3.4613 0 0 0 0.40625 1 22612 22612 2.3027 0 1 18068 4607 11352 11358 21709 21709 0.18105872764454034 KLVLRALTT 9 Unmodified _KLVLRALTT_ 0 0 0 REV__AluSx1_dup38141|chr6:109375335-109375646:+|2.797028458075789|0.4469790755198498|2.65|151.0|21|3|anti-sense REV__AluSx1_dup38141|chr6:109375335-109375646:+|2.797028458075789|0.4469790755198498|2.65|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.84527587890625 2 507.837134 1013.65972 -0.62486 -0.00031732 -0.78902 -0.0004007 -1.4139 -0.00071802 507.8365453293044 13.325 0.18025 16.699 16.625 16.805 3.3734 28 21 2 0 0 0 0.50582 1 312 312 0 0 1 27502 + 18069 17165 11353 11359 21710 21710 0.15343185645008361 KLVNKPLIY 9 Unmodified _KLVNKPLIY_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_2 6 544.3475952148438 2 544.347335 1086.68012 0.4776 0.00025998 0.80582 0.00043865 1.2834 0.00069863 544.3473938645456 74.288 0.39219 77.866 77.572 77.964 3.5779 74 45 3 0 0 0 0.33654 1 17490 17490 11.64 2.2572 1 262260 + 18070 20513 11354 11360 21711 21711 0.1402435630486707 KLWDGYHVY 9 Unmodified _KLWDGYHVY_ 0 0 0 REV__ENSG00000091947|ENST00000206380|TMEM101 REV__ENSG00000091947|ENST00000206380|TMEM101 MSMS UPN48_class_I_Rep_1 5 590.3170166015625 2 590.792924 1179.57129 NaN NaN NaN NaN NaN NaN NaN 113.75 1 117.38 116.88 117.88 3.6314 0 0 0 0.40038 1 27640 27640 0.6015 0 1 + 18071 18027 11355 11361 21712 21712 -0.011308546654390739 KLWEGLTEL 9 Unmodified _KLWEGLTEL_ 0 0 0 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2 ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 544.80322265625 2 544.802957 1087.59136 0.39023 0.0002126 -0.073902 -4.0262E-05 0.31633 0.00017234 544.8028707512447 66.512 0.71281 69.869 69.538 70.251 3.3576 78 49 2 0 0 0 0.095207 3 15904 15904;15948;15991 34.932 14.478 1 160530 18072 1053 11356 11362 21713;21714;21715 21713 0.05106896274492101 KLWEGLTEL 9 Unmodified _KLWEGLTEL_ 0 0 0 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2 ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 544.8031616210938 2 544.802957 1087.59136 0.34834 0.00018978 -0.15048 -8.1984E-05 0.19786 0.00010779 544.8027349364249 66.93 0.71021 70.193 69.914 70.624 3.2636 79 52 2 0 0 0 0.21414 2 16139 16121;16139 19.362 2.249 1 87549 18073 1053 11356 11362 21716;21717 21717 0.05106896274492101 KLWEGLTEL 9 Unmodified _KLWEGLTEL_ 0 0 0 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2 ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MSMS UPN47_class_I_Rep_2 3 544.8029174804688 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 66.69 1 69.949 69.449 70.449 3.2588 0 0 0 0.28608 1 16037 16037 11.495 3.3392 1 18074 1053 11356 11362 21718 21718 0.05106896274492101 KLWEGLTEL 9 Unmodified _KLWEGLTEL_ 0 0 0 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2 ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MSMS UPN47_class_I_Rep_2 3 544.8030395507812 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 66.831 1 70.095 69.595 70.595 3.2636 0 0 0 0.23173 1 16080 16080 14.405 4.3315 1 18075 1053 11356 11362 21719 21719 0.05106896274492101 KLWEGLTEL 9 Unmodified _KLWEGLTEL_ 0 0 0 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2 ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 544.8029174804688 2 544.802957 1087.59136 0.42437 0.0002312 0.04139 2.2549E-05 0.46576 0.00025375 544.8029150214257 66.856 0.54652 70.047 69.788 70.335 3.1914 64 41 2 0 0 0 0.2924 2 16128 16119;16128 14.405 14.405 1 100790 18076 1053 11356 11362 21720;21721 21721 0.05106896274492101 KLWIQFKQKKI 11 Unmodified _KLWIQFKQKKI_ 0 0 0 REV__L1MEc_dup14151|chr13:28085958-28086619:-|4.162586935571593|0.0017550358827123|11.21|151.0|25|3|sense REV__L1MEc_dup14151|chr13:28085958-28086619:-|4.162586935571593|0.0017550358827123|11.21|151.0|25|3|sense MSMS UPN48_class_I_Rep_3 7 487.31170654296875 3 487.309773 1458.90749 NaN NaN NaN NaN NaN NaN NaN 70.271 1 73.784 73.284 74.284 3.5128 0 0 0 0.38417 1 16250 16250 0.094841 0 1 + 18077 28376 11357 11363 21722 21722 0.1963931451280132 KLWRRKKD 8 Unmodified _KLWRRKKD_ 0 0 0 ENSG00000171014|ENST00000307033|OR4D5 ENSG00000171014|ENST00000307033|OR4D5 ENSG00000171014|ENST00000307033|OR4D5 MSMS UPN46_class_I_Rep_3 1 565.3521118164062 2 565.351274 1128.688 NaN NaN NaN NaN NaN NaN NaN 90.945 1 90.945 90.445 91.445 0 0 0 0 0.40746 1 21944 21944 0.69038 0.088878 1 18078 4502 11358 11364 21723 21723 0.12879928344977998 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MULTI-MSMS UPN47_class_I_Rep_1 2 573.7955322265625 2 573.795132 1145.57571 0.3633 0.00020846 0.29496 0.00016925 0.65826 0.00037771 573.7953092850215 63.166 0.28319 66.525 66.284 66.567 3.3595 39 20 2 0 0 0 0.22932 1 14937 14937 18.373 1.4308 1 268500 18079 3296 11359 11365 21724 21724 0.008746097574885425 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MULTI-MSMS UPN47_class_I_Rep_1 2 573.7952270507812 2 573.795132 1145.57571 0.36054 0.00020687 0.15833 9.0848E-05 0.51887 0.00029772 573.7951516861921 63.324 0.39913 66.684 66.567 66.966 3.3595 62 32 2 0 0 0 0.16799 2 14974 14974;15010 23.79 7.6407 1 257920 18080 3296 11359 11365 21725;21726 21725 0.008746097574885425 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MULTI-MSMS UPN47_class_I_Rep_2 3 573.7949829101562 2 573.795132 1145.57571 0.41376 0.00023741 0.3819 0.00021913 0.79566 0.00045655 573.7951005299199 63.69 0.67644 66.945 66.552 67.228 3.2556 129 57 3 0 0 0 0.12795 4 15119 15043;15082;15119;15157 28.495 14.588 1 248840 18081 3296 11359 11365 21727;21728;21729;21730 21729 0.008746097574885425 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MULTI-MSMS UPN47_class_I_Rep_3 4 573.7963256835938 2 573.795132 1145.57571 0.42404 0.00024331 0.28782 0.00016515 0.71185 0.00040846 573.7952341887257 63.563 0.62684 66.734 66.454 67.08 3.1713 106 54 3 0 0 0 0.20317 4 15158 15084;15118;15158;15175 20.415 7.5492 1 249920 18082 3296 11359 11365 21731;21732;21733;21734 21733 0.008746097574885425 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MSMS UPN47_class_I_Rep_3 4 573.795166015625 2 573.795132 1145.57571 NaN NaN NaN NaN NaN NaN NaN 63.8 1 66.974 66.474 67.474 3.1741 0 0 0 0.020029 1 15215 15215 53.404 17.36 1 18083 3296 11359 11365 21735 21735 0.008746097574885425 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MSMS UPN47_class_I_Rep_3 4 573.7950439453125 2 573.795132 1145.57571 NaN NaN NaN NaN NaN NaN NaN 63.965 1 67.139 66.639 67.639 3.1741 0 0 0 0.20399 1 15265 15265 16.149 1.5674 1 18084 3296 11359 11365 21736 21736 0.008746097574885425 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB nc|ENSG00000143393|Q9UBF8-3|PI4KB MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 573.795132 1145.57571 0.42169 0.00024197 0.15288 8.772E-05 0.57457 0.00032969 573.7955552940671 63.277 0.053505 66.533 66.484 66.537 3.2558 0.0036179 -0.00015633 NaN 18.373 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 71117 18085 3296 11359 11365 0.008746097574885425 KLYEEINQV 9 Unmodified _KLYEEINQV_ 0 0 0 ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1 ENSG00000119004|ENST00000356079|CYP20A1 ENSG00000119004|ENST00000356079|CYP20A1 MULTI-MSMS UPN47_class_I_Rep_3 4 568.304443359375 2 568.303321 1134.59209 0.1528 8.6837E-05 -0.51031 -0.00029001 -0.35751 -0.00020318 568.3029694052392 43.698 0.39845 46.94 46.805 47.203 3.2419 29 22 2 0 0 0 0.44742 1 9135 9135 5.2969 0.39987 1 45817 18086 2269 11360 11366 21737 21737 0.030176909235478888 KLYHNWFHYF 10 Unmodified _KLYHNWFHYF_ 0 0 0 REV__HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|60|1|anti-sense REV__HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7716369628906 3 485.571657 1453.69314 NaN NaN NaN NaN NaN NaN NaN 32.075 1 35.716 35.216 36.216 3.641 0 0 0 0.53105 1 4909 4909 0.77653 0 1 + 18087 23373 11361 11367 21738 21738 -0.015558125830693825 KLYIMFDWF 9 Unmodified _KLYIMFDWF_ 0 0 0 REV__ENSG00000235118|ENST00000441223|FAM237A REV__ENSG00000235118|ENST00000441223|FAM237A MSMS UPN48_class_I_Rep_2 6 631.8160400390625 2 631.817553 1261.62055 NaN NaN NaN NaN NaN NaN NaN 35.683 1 39.371 38.871 39.871 3.6877 0 0 0 0.39518 1 5914 5914 1.8442 0 1 + 18088 21305 11362 11368 21739 21739 0.00020717299139505485 KLYKIGIPP 9 Unmodified _KLYKIGIPP_ 0 0 0 ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENSG00000148634.16,HERC4,chr10,-,I20.1,67988145,67988662|50|5.72|2|intron;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;ENSG00000148634.16,HERC4,chr10,-,I20.1,67988145,67988662|50|5.72|4|intron;ENSG00000148634.16,HERC4,chr10,-,I20.1,67988145,67988662|50|5.72|1|intron;ENSG00000148634.16,HERC4,chr10,-,I20.1,67988145,67988662|50|5.72|3|intron;ENSG00000148634.16,HERC4,chr10,-,I20.1,67988145,67988662|50|5.72|5|intron;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4 ENST00000460168.1_1_10:69726418-69749980:-|nuORF ENST00000460168.1_1_10:69726418-69749980:-|nuORF MSMS UPN47_class_I_Rep_1 2 514.826904296875 2 514.828778 1027.643 NaN NaN NaN NaN NaN NaN NaN 41.003 1 44.674 44.174 45.174 3.6719 0 0 0 0.38639 1 8189 8189 3.9444 0 1 18089 3517 11363 11369 21740 21740 0.13028684759092357 KLYKPLFFTP 10 Unmodified _KLYKPLFFTP_ 0 0 0 LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|112|2|anti-sense LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|112|2|anti-sense LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|112|2|anti-sense MSMS UPN48_class_I_Rep_1 5 627.3557739257812 2 627.368267 1252.72198 NaN NaN NaN NaN NaN NaN NaN 64.733 1 68.187 67.687 68.687 3.4541 0 0 0 0.53105 1 14677 14677 2.9952 0.49676 1 18090 15675 11364 11370 21741 21741 0.1057291199338124 KLYPAQIYH 9 Unmodified _KLYPAQIYH_ 0 0 0 REV__MER49_dup567|chr7:45017213-45017853:-|1.1087842912462524|0.0103744673552324|6.74|151.0|31|2|anti-sense REV__MER49_dup567|chr7:45017213-45017853:-|1.1087842912462524|0.0103744673552324|6.74|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.8114013671875 2 566.811116 1131.60768 0.48356 0.00027409 0.093859 5.32E-05 0.57742 0.00032729 567.3126580093428 51.178 0.7903 54.846 54.315 55.105 3.6679 70 48 2 0 0 0 0.46434 1 10392 10392 4.3292 0.38484 1 182650 + 18091 31342 11365 11371 21742 21742 0.04714022231269155 KLYQSLENL 9 Unmodified _KLYQSLENL_ 0 0 0 L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|21|1|anti-sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|21|1|anti-sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.30615234375 2 554.305864 1106.59717 -0.0092169 -5.109E-06 -0.56132 -0.00031114 -0.57054 -0.00031625 554.3055251676403 38.322 0.64388 41.987 41.78 42.424 3.6652 91 47 3 0 0 0 0.45441 1 7320 7320 4.897 0.95262 1 90827 18092 9165 11366 11372 21743 21743 0.04813994786195508 KLYYEWRN 8 Unmodified _KLYYEWRN_ 0 0 0 REV__nc|ENSG00000120868|O14727-5|APAF1 REV__nc|ENSG00000120868|O14727-5|APAF1 MSMS UPN47_class_I_Rep_1 2 586.2984008789062 2 586.298373 1170.58219 NaN NaN NaN NaN NaN NaN NaN 72.642 1 76.022 75.522 76.522 3.3799 0 0 0 0.40746 1 17788 17788 0.69038 0 1 + 18093 18715 11367 11373 21744 21744 0.0037254770886647748 KLYYQYSQYRK 11 Unmodified _KLYYQYSQYRK_ 0 0 0 REV__L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|16|1|sense REV__L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.93603515625 3 513.936664 1538.78816 -0.23364 -0.00012008 -0.64732 -0.00033268 -0.88096 -0.00045276 514.2705813931178 37.896 0.55198 41.138 40.898 41.45 3.2414 70 42 2 0 0 0 0.68478 1 7272 7272 0.094841 0 1 115530 + 18094 24392 11368 11374 21745 21745 0.04032076097450954 KMAFIGFAI 9 Unmodified _KMAFIGFAI_ 0 0 0 REV__L1PA16_dup13508|chr20:41062939-41064313:-|1.0829572964669|0.0480393698848658|4.49|150.0|84|3|anti-sense REV__L1PA16_dup13508|chr20:41062939-41064313:-|1.0829572964669|0.0480393698848658|4.49|150.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.656005859375 2 499.280606 996.546659 NaN NaN NaN NaN NaN NaN NaN 90.857 1 90.857 90.357 91.357 0 0 0 0 0.39428 1 21920 21920 2.0598 0 1 + 18095 29355 11369 11375 21746 21746 0.048247939274801865 KMAFIQKTGKN 11 Unmodified _KMAFIQKTGKN_ 0 0 0 L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|7|1|sense L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|7|1|sense L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 633.3689575195312 2 633.355365 1264.69618 NaN NaN NaN NaN NaN NaN NaN 88.467 1 92.205 91.705 92.705 3.7379 0 0 0 0.34167 1 21060 21060 9.544 1.935 1 18096 9445 11370 11376 21747 21747 0.07441694479462058 KMAFIQKTGKN 11 Unmodified _KMAFIQKTGKN_ 0 0 0 L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|7|1|sense L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|7|1|sense L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 633.3689575195312 2 633.355365 1264.69618 NaN NaN NaN NaN NaN NaN NaN 88.918 1 92.747 92.247 93.247 3.8293 0 0 0 0.34167 1 21100 21100 9.544 3.8121 1 18097 9445 11370 11376 21748 21748 0.07441694479462058 KMAHPLPLLAA 11 Unmodified _KMAHPLPLLAA_ 0 0 0 REV__L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|101|1|anti-sense REV__L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|101|1|anti-sense MSMS UPN46_class_I_Rep_3 1 581.3423461914062 2 581.344269 1160.67399 NaN NaN NaN NaN NaN NaN NaN 44.433 1 44.433 43.933 44.933 0 0 0 0 0.38417 1 8956 8956 1.1933 0.59184 1 + 18098 29035 11371 11377 21749 21749 0.10007514801691286 KMAKIVIFSFV 11 Unmodified _KMAKIVIFSFV_ 0 0 0 L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|33|3|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|33|3|sense L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 641.8826293945312 2 641.883227 1281.7519 NaN NaN NaN NaN NaN NaN NaN 92 1 92 91.5 92.5 0 0 0 0 0.38417 1 22247 22247 2.7352 0 1 18099 10561 11372 11378 21750 21750 0.12229527667022921 KMATRFIYE 9 Unmodified _KMATRFIYE_ 0 0 0 REV__ENSG00000148156|ENST00000374667|ACTL7B REV__ENSG00000148156|ENST00000374667|ACTL7B MSMS UPN48_class_I_Rep_1 5 579.804931640625 2 579.802434 1157.59032 NaN NaN NaN NaN NaN NaN NaN 49.362 1 52.887 52.387 53.387 3.5246 0 0 0 0.38639 1 9967 9967 3.9444 0.3479 1 + 18100 19579 11373 11379 21751 21751 0.017823586339545727 KMAWIRKI 8 Unmodified _KMAWIRKI_ 0 0 0 ENST00000576084.5_1_17:53029422-53031174:-|nuORF ENST00000576084.5_1_17:53029422-53031174:-|nuORF ENST00000576084.5_1_17:53029422-53031174:-|nuORF MSMS UPN48_class_I_Rep_2 6 523.303466796875 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 78.737 1 82.37 81.87 82.87 3.6331 0 0 0 0.40625 1 18680 18680 2.3027 0 1 18101 7530 11374 11380 21752 21752 0.1061128032133638 KMCIHLLI 8 Unmodified _KMCIHLLI_ 0 0 0 L1MC5a_dup4398|chr4:86980517-86980853:+|1.3339420807382287|0.0070336274239311|7.57|151.0|3|1|sense L1MC5a_dup4398|chr4:86980517-86980853:+|1.3339420807382287|0.0070336274239311|7.57|151.0|3|1|sense L1MC5a_dup4398|chr4:86980517-86980853:+|1.3339420807382287|0.0070336274239311|7.57|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 485.7718505859375 2 485.782459 969.550365 NaN NaN NaN NaN NaN NaN NaN 114.66 1 118.25 117.75 118.75 3.5809 0 0 0 0.40738 1 28341 28341 0.79363 0 1 18102 11746 11375 11381 21753 21753 0.06437140429716237 KMDDLNLHY 9 Oxidation (M) _KM(Oxidation (M))DDLNLHY_ KM(1)DDLNLHY KM(44)DDLNLHY 0 0 1 ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3 ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENST00000550564.1_1_12:53468877-53473168:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 582.7716064453125 2 582.771331 1163.52811 -0.048933 -2.8517E-05 0.23049 0.00013432 0.18156 0.00010581 582.7714237558204 35.582 0.80154 39.259 38.93 39.731 3.6762 130 52 3 0 0 0 0.061655 1 6509 6509 43.982 27.833 1 366490 18103 4330 11376 11382 21754 21754 139 -0.04711412505048429 KMDDLNLHY 9 Oxidation (M) _KM(Oxidation (M))DDLNLHY_ KM(1)DDLNLHY KM(42)DDLNLHY 0 0 1 ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3 ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENST00000550564.1_1_12:53468877-53473168:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 582.7714233398438 2 582.771331 1163.52811 0.045597 2.6573E-05 -0.0064216 -3.7423E-06 0.039175 2.283E-05 582.7713406998478 35.942 0.93835 39.353 38.946 39.884 3.4114 148 67 3 0 0 0 0.066364 1 6672 6672 41.956 26.108 1 291230 18104 4330 11376 11382 21755 21755 139 -0.04711412505048429 KMDYSGTLL 9 Unmodified _KMDYSGTLL_ 0 0 0 REV__nc|ENSG00000085433|O94967-2|WDR47 REV__nc|ENSG00000085433|O94967-2|WDR47 MULTI-MSMS UPN47_class_I_Rep_2 3 514.2600708007812 2 514.260068 1026.50558 0.11008 5.6609E-05 1.5977 0.00082165 1.7078 0.00087826 514.2608575193274 74.746 0.31927 78.058 77.977 78.296 3.3127 63 37 2 0 0 0 0.41259 1 18460 18460 7.2892 0 1 118600 + 18105 17953 11377 11383 21756 21756 -0.006610119026163375 KMEKIPVHIFR 11 Unmodified _KMEKIPVHIFR_ 0 0 0 REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.6077575683594 3 466.607713 1396.80131 0.22993 0.00010729 0.040503 1.8899E-05 0.27043 0.00012618 466.6076988003441 97.262 0.073669 97.262 97.203 97.277 0 16 8 2 0 0 0 0.68024 1 23662 23662 0.50596 0 1 386690 + 18106 29692 11378 11384 21757 21757 0.11878235675840187 KMEKIPVHIFR 11 Unmodified _KMEKIPVHIFR_ 0 0 0 REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 466.607713 1396.80131 0.2099 9.7943E-05 0.40912 0.0001909 0.61902 0.00028884 466.60777930065 93.762 0.37886 97.231 97.112 97.491 3.4687 0.0038538 5.7335E-05 NaN 0.50596 86 52 2 NaN NaN NaN NaN 0 NaN NaN 0 189700 + 18107 29692 11378 11384 0.11878235675840187 KMEKIPVHIFR 11 Unmodified _KMEKIPVHIFR_ 0 0 0 REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 466.607713 1396.80131 -0.0025374 -1.184E-06 0.44971 0.00020984 0.44717 0.00020865 466.94231971692363 93.788 0.24866 97.193 97.128 97.377 3.4052 -0.033733 0.00011416 NaN 0.50596 52 34 2 NaN NaN NaN NaN 0 NaN NaN 0 255040 + 18108 29692 11378 11384 0.11878235675840187 KMEKIPVHIFR 11 Unmodified _KMEKIPVHIFR_ 0 0 0 REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense REV__L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|243|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 466.607713 1396.80131 0.20192 9.4215E-05 0.36502 0.00017032 0.56693 0.00026453 466.60782052255524 93.331 0.15112 97.222 97.154 97.305 3.8914 -0.0051264 -4.4003E-06 NaN 0.50596 43 18 3 NaN NaN NaN NaN 0 NaN NaN 0 259520 + 18109 29692 11378 11384 0.11878235675840187 KMEKKKRKH 9 Unmodified _KMEKKKRKH_ 0 0 0 ENSG00000164853|ENST00000316333|UNCX ENSG00000164853|ENST00000316333|UNCX ENSG00000164853|ENST00000316333|UNCX MSMS UPN48_class_I_Rep_1 5 606.8721923828125 2 606.871517 1211.72848 NaN NaN NaN NaN NaN NaN NaN 85.459 1 89.065 88.565 89.565 3.6059 0 0 0 0.4007 1 20442 20442 0.52476 0 1 18110 4136 11379 11385 21758 21758 0.13108526673090637 KMFILHKAIY 10 Unmodified _KMFILHKAIY_ 0 0 0 L1PREC2_dup4534|chrX:74051714-74054521:+|1.197895747904586|0.1088832101754761|3.46|151.0|30|1|sense L1PREC2_dup4534|chrX:74051714-74054521:+|1.197895747904586|0.1088832101754761|3.46|151.0|30|1|sense L1PREC2_dup4534|chrX:74051714-74054521:+|1.197895747904586|0.1088832101754761|3.46|151.0|30|1|sense MSMS UPN48_class_I_Rep_2 6 421.8338928222656 3 421.914255 1262.72094 NaN NaN NaN NaN NaN NaN NaN 39.273 1 43.003 42.503 43.503 3.7297 0 0 0 0.53105 1 6948 6948 1.9064 0 1 18111 15460 11380 11386 21759 21759 0.10008374352833016 KMFITYLVY 9 Unmodified _KMFITYLVY_ 0 0 0 REV__ENST00000547660.5_1_12:51442859-51449955:+|nuORF REV__ENST00000547660.5_1_12:51442859-51449955:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 589.8199462890625 2 589.319928 1176.6253 0.48623 0.00028655 -0.94729 -0.00055826 -0.46106 -0.00027171 589.3192017025458 50.743 0.42351 50.743 50.538 50.962 0 65 47 2 0 0 0 0.46869 1 10771 10771 3.9444 0 1 279440 + 18112 17677 11381 11387 21760 21760 0.04405601441908402 KMFIWLYL 8 Unmodified _KMFIWLYL_ 0 0 0 REV__L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|1|1|sense REV__L1M4a2_dup394|chr3:121951127-121952748:+|3.527454825344519|0.0261948380802122|7.07|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 557.3062744140625 2 557.311906 1112.60926 NaN NaN NaN NaN NaN NaN NaN 56.226 1 56.226 55.726 56.726 0 0 0 0 0.40738 1 12254 12254 0.79363 0 1 + 18113 24512 11382 11388 21761 21761 0.05745939995676963 KMFKFQIKK 9 Unmodified _KMFKFQIKK_ 0 0 0 L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|23|3|sense L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|23|3|sense L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 599.86328125 2 599.362462 1196.71037 -0.43724 -0.00026206 -0.82482 -0.00049436 -1.2621 -0.00075643 599.8634359022893 12.694 0.25843 16.067 15.979 16.237 3.3734 38 30 2 0 0 0 0.50088 1 137 137 0.52476 0 1 26459 18114 12134 11383 11389 21762 21762 0.11988391698378109 KMFMGHVF 8 Unmodified _KMFMGHVF_ 0 0 0 Charlie26a_dup101|chr3:49992268-49992505:-|1.1676496047760334|0.0190345803224227|5.94|149.0|11|1|anti-sense Charlie26a_dup101|chr3:49992268-49992505:-|1.1676496047760334|0.0190345803224227|5.94|149.0|11|1|anti-sense Charlie26a_dup101|chr3:49992268-49992505:-|1.1676496047760334|0.0190345803224227|5.94|149.0|11|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.7449035644531 2 498.743334 995.472114 0.309 0.00015411 0.113 5.636E-05 0.422 0.00021047 498.7432425391757 89.679 0.4732 89.679 89.547 90.02 0 95 38 3 0 0 0 0.82752 1 21568 21568 0.69038 0 1 854220 18115 506 11384 11390 21763 21763 -0.025802921555168723 KMFSDEILL 9 Oxidation (M) _KM(Oxidation (M))FSDEILL_ KM(1)FSDEILL KM(53)FSDEILL 0 0 1 nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3 nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 MULTI-MSMS UPN47_class_I_Rep_1 2 556.288818359375 2 556.288825 1110.5631 0.42221 0.00023487 -1.3686 -0.00076132 -0.94637 -0.00052645 556.2880412144892 58.896 1.2878 62.314 61.903 63.191 3.4171 243 85 5 0 0 0 0.038999 1 13633 13633 53.404 20.618 1 1495300 18116 4817 11385 11391 21764 21764 151 0.01223830302933493 KMFSDEILL 9 Oxidation (M) _KM(Oxidation (M))FSDEILL_ KM(1)FSDEILL KM(48)FSDEILL 0 0 1 nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3 nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 MULTI-MSMS UPN47_class_I_Rep_3 4 556.2889404296875 2 556.288825 1110.5631 0.35215 0.00019589 -1.1078 -0.00061627 -0.75569 -0.00042038 556.2880786849711 59.388 1.4682 62.553 62.069 63.537 3.1651 230 95 4 0 0 0 0.053261 1 13873 13873 47.594 11.467 1 1070000 18117 4817 11385 11391 21765 21765 151 0.01223830302933493 KMGILPKAI 9 Unmodified _KMGILPKAI_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|198|3|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|198|3|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|198|3|sense MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 57.452 1 60.743 60.243 61.243 3.2912 0 0 0 0.39518 1 13229 13229 1.8442 1.1539 1 18118 13847 11386 11392 21766 21766 0.11849055852906076 KMGILPKAI 9 Unmodified _KMGILPKAI_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|198|3|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|198|3|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|198|3|sense MSMS UPN47_class_I_Rep_2 3 485.8118591308594 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 57.57 1 60.861 60.361 61.361 3.2912 0 0 0 0.39518 1 13266 13266 1.8442 1.1539 1 18119 13847 11386 11392 21767 21767 0.11849055852906076 KMGKIQMKAV 10 Unmodified _KMGKIQMKAV_ 0 0 0 L1MD3_dup316|chr1:198674731-198675043:-|1.0893746535912394|0.0174524272341263|5.96|151.0|7|2|sense L1MD3_dup316|chr1:198674731-198675043:-|1.0893746535912394|0.0174524272341263|5.96|151.0|7|2|sense L1MD3_dup316|chr1:198674731-198675043:-|1.0893746535912394|0.0174524272341263|5.96|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.3298950195312 2 567.330304 1132.64606 0.41842 0.00023738 -0.29215 -0.00016574 0.12628 7.1641E-05 567.3300186543671 81.645 0.89778 85.158 84.718 85.615 3.5122 160 100 2 0 0 0 0.56333 1 20472 20472 1.4819 0 1 224520 18120 12072 11387 11393 21768 21768 0.08503868549951221 KMGLWNGLRV 10 Unmodified _KMGLWNGLRV_ 0 0 0 ENST00000416263.3_1_17:48945337-48945466:+|nuORF ENST00000416263.3_1_17:48945337-48945466:+|nuORF ENST00000416263.3_1_17:48945337-48945466:+|nuORF MSMS UPN48_class_I_Rep_3 7 587.8211669921875 2 587.331693 1172.64883 NaN NaN NaN NaN NaN NaN NaN 41.274 1 44.92 44.42 45.42 3.6458 0 0 0 0.53105 1 7438 7438 1.4819 0.15237 1 18121 6649 11388 11394 21769 21769 0.0694145999907505 KMHLNRKRR 9 Unmodified _KMHLNRKRR_ 0 0 0 L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|5|1|sense L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|5|1|sense L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 619.8701782226562 2 619.872382 1237.73021 NaN NaN NaN NaN NaN NaN NaN 85.851 1 89.284 88.784 89.784 3.4329 0 0 0 0.4007 1 21356 21356 0.52476 0.066424 1 18122 14069 11389 11395 21770 21770 0.12085580481698344 KMHLVGFAI 9 Unmodified _KMHLVGFAI_ 0 0 0 REV__L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|81|1|anti-sense REV__L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|81|1|anti-sense MSMS UPN48_class_I_Rep_1 5 508.2926330566406 2 508.291505 1014.56846 NaN NaN NaN NaN NaN NaN NaN 58.717 1 62.204 61.704 62.704 3.487 0 0 0 0.35339 1 12837 12837 7.9102 2.6795 1 + 18123 24007 11390 11396 21771 21771 0.06175598676065874 KMHLVGFAI 9 Unmodified _KMHLVGFAI_ 0 0 0 REV__L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|81|1|anti-sense REV__L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|81|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 508.7943115234375 2 508.291505 1014.56846 0.40185 0.00020426 1.6188 0.00082282 2.0206 0.0010271 508.2926893180623 58.716 0.23329 62.214 62.13 62.363 3.4987 19 12 2 0 0 0 0.40174 2 12790 12790;12807 7.9102 0.62092 1 87699 + 18124 24007 11390 11396 21772;21773 21772 0.06175598676065874 KMHLVGFAI 9 Unmodified _KMHLVGFAI_ 0 0 0 REV__L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|81|1|anti-sense REV__L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|81|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 508.291505 1014.56846 0.22424 0.00011398 1.9594 0.00099597 2.1837 0.0011099 508.2925880855754 58.604 0.18277 62.127 61.993 62.176 3.5231 -0.043691 0.00014159 NaN 7.9102 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 54586 + 18125 24007 11390 11396 0.06175598676065874 KMIFVWLF 8 Unmodified _KMIFVWLF_ 0 0 0 REV__L1MA3_dup5496|chrX:97002649-97005538:-|1.570864784851442|0.0202648419910296|6.28|150.0|154|2|anti-sense REV__L1MA3_dup5496|chrX:97002649-97005538:-|1.570864784851442|0.0202648419910296|6.28|150.0|154|2|anti-sense MSMS UPN48_class_I_Rep_1 5 542.292236328125 2 542.306624 1082.59869 NaN NaN NaN NaN NaN NaN NaN 62.433 1 65.896 65.396 66.396 3.4625 0 0 0 0.40604 1 13972 13972 2.5775 0.27475 1 + 18126 25050 11391 11397 21774 21774 0.06069957341242116 KMIKYMDKY 9 Unmodified _KMIKYMDKY_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 609.700439453125 2 610.31432 1218.61409 0.51761 0.00031591 1.412 0.00086173 1.9296 0.0011776 610.3152924522941 55.379 0.51075 58.69 58.418 58.929 3.3102 49 29 2 0 0 0 0.12099 1 12606 12606 6.7232 0.99131 1 66215 18127 10197 11392 11398 21775 21775 0.013524560761425164 KMIKYMDKY 9 Unmodified _KMIKYMDKY_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 610.31432 1218.61409 0.37185 0.00022695 1.4161 0.00086425 1.7879 0.0010912 610.3154701025136 55.057 0.6232 58.559 58.257 58.88 3.5014 -0.099547 0.00029018 NaN 6.7232 54 38 2 NaN NaN NaN NaN 0 NaN NaN 0 117950 18128 10197 11392 11398 0.013524560761425164 KMIKYMDKY 9 Unmodified _KMIKYMDKY_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|39|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 610.31432 1218.61409 0.42945 0.0002621 0.81915 0.00049994 1.2486 0.00076204 610.3149755644325 55.548 0.48992 58.726 58.372 58.862 3.1779 0.068019 -0.00043844 NaN 6.7232 45 29 2 NaN NaN NaN NaN 0 NaN NaN 0 71026 18129 10197 11392 11398 0.013524560761425164 KMINRYVKK 9 Unmodified _KMINRYVKK_ 0 0 0 L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|47|3|sense L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|47|3|sense L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|47|3|sense MSMS UPN48_class_I_Rep_3 7 590.354736328125 2 590.355168 1178.69578 NaN NaN NaN NaN NaN NaN NaN 28.72 1 32.463 31.963 32.963 3.7424 0 0 0 0.4007 1 3942 3942 0.52476 0 1 18130 9812 11393 11399 21776 21776 0.11358319550208762 KMKEEKRH 8 Unmodified _KMKEEKRH_ 0 0 0 REV__ENSG00000068745.15,IP6K2,chr3,-,I15.1,48689714,48691306|33|10.44|2|intron REV__ENSG00000068745.15,IP6K2,chr3,-,I15.1,48689714,48691306|33|10.44|2|intron MSMS UPN48_class_I_Rep_2 6 543.2982788085938 2 543.29785 1084.58115 NaN NaN NaN NaN NaN NaN NaN 30.21 1 33.845 33.345 34.345 3.6351 0 0 0 0.40643 1 4388 4388 2.0598 1.2661 1 + 18131 17780 11394 11400 21777 21777 0.042240100683102355 KMKEIAEAY 9 Oxidation (M) _KM(Oxidation (M))KEIAEAY_ KM(1)KEIAEAY KM(40)KEIAEAY 0 0 1 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000126803|ENST00000247207|HSPA2;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.L135R|1|0.09|ENSG00000109971|chr11:123060600-123060600|A/C|missense_variant ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN46_class_I_Rep_3 1 549.7785034179688 2 549.778625 1097.5427 0.057655 3.1697E-05 0.058039 3.1909E-05 0.11569 6.3606E-05 549.778599028938 26.297 1.1979 26.297 25.888 27.086 0 206 99 3 0 0 0 0.073198 1 3726 3726 40.239 8.9709 1 361950 18132 1917 11395 11401 21778 21778 57 -0.0021734035690315068 KMKERKRRRRS 11 Unmodified _KMKERKRRRRS_ 0 0 0 REV__ENSG00000188089|ENST00000696112|PLA2G4E REV__ENSG00000188089|ENST00000696112|PLA2G4E MSMS UPN48_class_I_Rep_2 6 510.9788818359375 3 510.979315 1529.91611 NaN NaN NaN NaN NaN NaN NaN 104.81 1 108.5 108 109 3.6901 0 0 0 0.38417 1 24804 24804 0.094841 0 1 + 18133 20954 11396 11402 21779 21779 0.17235357930348982 KMKKNSNSI 9 Unmodified _KMKKNSNSI_ 0 0 0 L1ME3D_dup439|chr2:39077344-39078449:+|2.468868189349352|0.0176400533157513|7.13|151.0|41|3|sense L1ME3D_dup439|chr2:39077344-39078449:+|2.468868189349352|0.0176400533157513|7.13|151.0|41|3|sense L1ME3D_dup439|chr2:39077344-39078449:+|2.468868189349352|0.0176400533157513|7.13|151.0|41|3|sense MSMS UPN47_class_I_Rep_3 4 525.291015625 2 525.292233 1048.56991 NaN NaN NaN NaN NaN NaN NaN 46.919 1 50.163 49.663 50.663 3.2439 0 0 0 0.38784 1 10080 10080 3.5965 1.2938 1 18134 12801 11397 11403 21780 21780 0.04757187974155386 KMKLFKNKTT 10 Unmodified _KMKLFKNKTT_ 0 0 0 HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|2|1|sense HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|2|1|sense HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 619.8693237304688 2 619.868108 1237.72166 NaN NaN NaN NaN NaN NaN NaN 87.2 1 90.819 90.319 91.319 3.6187 0 0 0 0.53105 1 20892 20892 1.6526 0 1 18135 7924 11398 11404 21781 21781 0.11231169001871422 KMKLRQFY 8 Unmodified _KMKLRQFY_ 0 0 0 L1MB3_dup16510|chr20:37029462-37030437:+|1.1908298953081895|0.023807295515313|5.64|151.0|13|2|sense L1MB3_dup16510|chr20:37029462-37030437:+|1.1908298953081895|0.023807295515313|5.64|151.0|13|2|sense L1MB3_dup16510|chr20:37029462-37030437:+|1.1908298953081895|0.023807295515313|5.64|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 557.31640625 2 557.315512 1112.61647 NaN NaN NaN NaN NaN NaN NaN 80.635 1 83.944 83.444 84.444 3.309 0 0 0 0.40738 1 20170 20170 0.79363 0 1 18136 10367 11399 11405 21782 21782 0.06466672596116041 KMKPKVVR 8 Unmodified _KMKPKVVR_ 0 0 0 REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF MSMS UPN48_class_I_Rep_3 7 493.81005859375 2 493.320597 984.626641 NaN NaN NaN NaN NaN NaN NaN 76.08 1 79.663 79.163 80.163 3.5831 0 0 0 0.40738 1 17906 17906 0.79363 0 1 + 18137 22256 11400 11406 21783 21783 0.13371280321348422 KMKQKERELRL 11 Unmodified _KMKQKERELRL_ 0 0 0 nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF nc|ENSG00000213465|P36404-2|ARL2 nc|ENSG00000213465|P36404-2|ARL2 MSMS UPN48_class_I_Rep_1 5 486.95855712890625 3 486.957294 1457.85005 NaN NaN NaN NaN NaN NaN NaN 94.652 1 98.268 97.768 98.768 3.6167 0 0 0 0.38417 1 22782 22782 0.50596 0 1 18138 5591 11401 11407 21784 21784 0.1394410424495618 KMKRLKGIHVF 11 Unmodified _KMKRLKGIHVF_ 0 0 0 ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.9482116699219 3 452.94807 1355.82238 0.19287 8.7362E-05 0.46037 0.00020852 0.65324 0.00029588 452.9482217511674 105.96 0.16673 105.96 105.95 106.11 0 31 21 2 0 0 0 0.68478 1 25848 25848 0.094841 0 1 309800 18139 7081 11402 11408 21785 21785 0.158702457753634 KMKRLKGIHVF 11 Unmodified _KMKRLKGIHVF_ 0 0 0 ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 452.94807 1355.82238 0.18671 8.4569E-05 1.058 0.0004792 1.2447 0.00056377 453.2830315936127 102.28 0.083008 106.07 106.02 106.1 3.7888 0.051973 0.00046502 NaN 0.094841 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 72509 18140 7081 11402 11408 0.158702457753634 KMKRLKGIHVF 11 Unmodified _KMKRLKGIHVF_ 0 0 0 ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 452.94807 1355.82238 -0.14956 -6.7742E-05 1.1728 0.00053123 1.0233 0.00046349 452.948355573995 102.56 0.039612 106.05 106.02 106.06 3.4873 0.030592 0.00062111 NaN 0.094841 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 72481 18141 7081 11402 11408 0.158702457753634 KMKRLKGIHVF 11 Unmodified _KMKRLKGIHVF_ 0 0 0 ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 452.94807 1355.82238 0.17064 7.7293E-05 1.0295 0.0004663 1.2001 0.00054359 452.9484648765198 102.22 0.23982 105.99 105.87 106.11 3.776 -0.023911 0.00042632 NaN 0.094841 41 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1204000 18142 7081 11402 11408 0.158702457753634 KMKRVEESIL 10 Unmodified _KMKRVEESIL_ 0 0 0 ENST00000521308.5_1_5:150563000-150603580:-|nuORF;ENSG00000198624|ENST00000355417|CCDC69 ENST00000521308.5_1_5:150563000-150603580:-|nuORF ENST00000521308.5_1_5:150563000-150603580:-|nuORF MSMS UPN48_class_I_Rep_1 5 616.8538818359375 2 616.855198 1231.69584 NaN NaN NaN NaN NaN NaN NaN 48.917 1 52.441 51.941 52.941 3.5239 0 0 0 0.53105 1 9829 9829 2.7352 0.23671 1 18143 5443 11403 11409 21786 21786 0.08926274759596708 KMKRVKRFLEK 11 Unmodified _KMKRVKRFLEK_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 488.30670166015625 3 488.306146 1461.89661 0.23918 0.00011679 0.18992 9.2738E-05 0.4291 0.00020953 488.30619856520093 61.414 0.23673 64.926 64.786 65.023 3.5128 24 18 2 0 0 0 0.68081 1 13572 13572 0.45452 0 1 155410 18144 6694 11404 11410 21787 21787 0.1841358886690614 KMKYKFRHQ 9 Unmodified _KMKYKFRHQ_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS UPN48_class_I_Rep_2 6 633.3497924804688 2 633.350417 1264.68628 NaN NaN NaN NaN NaN NaN NaN 51.631 1 55.27 54.77 55.77 3.639 0 0 0 0.4007 1 10659 10659 0.52476 0 1 + 18145 20568 11405 11411 21788 21788 0.06452551264715112 KMLAEREEAL 10 Unmodified _KMLAEREEAL_ 0 0 0 ENST00000468597.5_1_22:38082399-38086802:+|nuORF;ENST00000493862.5_1_22:38077834-38087340:+|nuORF;ENSG00000273899|ENST00000359114|NOL12 ENST00000468597.5_1_22:38082399-38086802:+|nuORF ENST00000468597.5_1_22:38082399-38086802:+|nuORF MSMS UPN48_class_I_Rep_2 6 595.3167724609375 2 595.315906 1188.61726 NaN NaN NaN NaN NaN NaN NaN 41.568 1 45.319 44.819 45.819 3.7508 0 0 0 0.53105 1 7603 7603 4.897 0 1 18146 5818 11406 11412 21789 21789 0.030494224545009274 KMLNKVMAI 9 Unmodified _KMLNKVMAI_ 0 0 0 REV__MER65-int_dup274|chr4:139165681-139166055:+|1.831365129494712|0.0115242142038097|7.31|151.0|29|3|anti-sense REV__MER65-int_dup274|chr4:139165681-139166055:+|1.831365129494712|0.0115242142038097|7.31|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 524.2928466796875 2 524.306298 1046.59804 NaN NaN NaN NaN NaN NaN NaN 34.886 1 38.559 38.059 39.059 3.6735 0 0 0 0.38639 1 5679 5679 3.9444 0 1 + 18147 31522 11407 11413 21790 21790 0.07660794629873635 KMLPVSSLKHV 11 Unmodified _KMLPVSSLKHV_ 0 0 0 THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|81|3|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|81|3|anti-sense THE1D-int_dup633|chr4:88026039-88027657:+|8.934464969230003|0.4280777527194018|4.38|151.0|81|3|anti-sense MSMS UPN48_class_I_Rep_1 5 619.8692626953125 2 619.868108 1237.72166 NaN NaN NaN NaN NaN NaN NaN 87.954 1 91.573 91.073 92.073 3.6187 0 0 0 0.38417 1 21090 21090 2.9952 1.3426 1 18148 32964 11408 11414 21791 21791 0.11231169001848684 KMLVLVTSY 9 Unmodified _KMLVLVTSY_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|387|2|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|387|2|anti-sense MSMS UPN48_class_I_Rep_1 5 527.3060913085938 2 527.304278 1052.594 NaN NaN NaN NaN NaN NaN NaN 100.27 1 103.88 103.38 104.38 3.6084 0 0 0 0.38478 1 24220 24220 4.3292 0 1 + 18149 25095 11409 11415 21792 21792 0.06981028407835765 KMMCESFI 8 Unmodified _KMMCESFI_ 0 0 0 ENSG00000135220|ENST00000251566|UGT2A3 ENSG00000135220|ENST00000251566|UGT2A3 ENSG00000135220|ENST00000251566|UGT2A3 MSMS UPN47_class_I_Rep_3 4 494.7191467285156 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 20.73 1 24.079 23.579 24.579 3.3496 0 0 0 0.40604 1 2192 2192 2.5775 0 1 18150 2888 11410 11416 21793 21793 -0.07143368226650182 KMMVGMLRR 9 Unmodified _KMMVGMLRR_ 0 0 0 ENST00000373475.9_1_1:33291917-33292022:+|nuORF ENST00000373475.9_1_1:33291917-33292022:+|nuORF ENST00000373475.9_1_1:33291917-33292022:+|nuORF MSMS UPN48_class_I_Rep_1 5 561.3088989257812 2 561.308849 1120.60315 NaN NaN NaN NaN NaN NaN NaN 75.175 1 78.675 78.175 79.175 3.4996 0 0 0 0.38639 1 17797 17797 3.9444 0.66309 1 18151 6414 11411 11417 21794 21794 0.04766775220878117 KMNFEEVY 8 Unmodified _KMNFEEVY_ 0 0 0 L1ME3F_dup4524|chr21:37079826-37080906:-|3.1464513803561864|0.3961265768518149|2.99|151.0|11|1|sense L1ME3F_dup4524|chr21:37079826-37080906:-|3.1464513803561864|0.3961265768518149|2.99|151.0|11|1|sense L1ME3F_dup4524|chr21:37079826-37080906:-|3.1464513803561864|0.3961265768518149|2.99|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 530.2444458007812 2 530.244418 1058.47428 NaN NaN NaN NaN NaN NaN NaN 118.62 1 122.22 121.72 122.72 3.6036 0 0 0 0.40604 1 29442 29442 2.5775 0 1 18152 12822 11412 11418 21795 21795 -0.05261584936715735 KMNPKSTT 8 Unmodified _KMNPKSTT_ 0 0 0 L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|17|1|sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|17|1|sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|17|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 453.7398681640625 2 453.739302 905.464052 0.16077 7.2946E-05 0.72532 0.0003291 0.88608 0.00040205 453.739566573806 104.51 0.23211 108.21 108.16 108.39 3.6991 61 32 2 0 0 0 0.82752 1 24733 24733 4.756 2.1785 1 7913600 18153 9065 11413 11419 21796 21796 0.007538521286846844 KMPKPRLKAT 10 Unmodified _KMPKPRLKAT_ 0 0 0 nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1 nc|ENSG00000069275|Q9H1E3-2|NUCKS1 nc|ENSG00000069275|Q9H1E3-2|NUCKS1 MULTI-MSMS UPN46_class_I_Rep_3 1 585.3639526367188 2 585.362993 1168.71143 0.52936 0.00030987 2.2988 0.0013456 2.8282 0.0016555 585.3637197527837 92.385 0.027962 92.385 92.369 92.397 0 4 2 2 0 0 0 0.56078 1 22359 22359 3.2813 0.54611 1 84663 18154 1057 11414 11420 21797 21797 0.13382606067284541 KMPKPRLKAT 10 Unmodified _KMPKPRLKAT_ 0 0 0 nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1 nc|ENSG00000069275|Q9H1E3-2|NUCKS1 nc|ENSG00000069275|Q9H1E3-2|NUCKS1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 585.362993 1168.71143 0.51625 0.0003022 1.9142 0.0011205 2.4304 0.0014227 585.3639723780875 88.62 0.03492 92.431 92.41 92.445 3.8104 0.023019 -2.489E-05 NaN 3.2813 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 44469 18155 1057 11414 11420 0.13382606067284541 KMRKWPQM 8 Unmodified _KMRKWPQM_ 0 0 0 REV__L1PA16_dup2383|chr3:87839609-87840150:-|1.352528569066477|0.0032615703993376|8.7|127.0|2|1|sense REV__L1PA16_dup2383|chr3:87839609-87840150:-|1.352528569066477|0.0032615703993376|8.7|127.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 552.7915649414062 2 552.793889 1103.57323 NaN NaN NaN NaN NaN NaN NaN 111.74 1 115.4 114.9 115.9 3.6614 0 0 0 0.40604 1 26531 26531 2.5775 0.27475 1 + 18156 29363 11415 11421 21798 21798 0.025581595471749097 KMRLFQRQWAK 11 Unmodified _KMRLFQRQWAK_ 0 0 0 ENST00000484153.1_1_1:11826815-11837330:+|nuORF ENST00000484153.1_1_1:11826815-11837330:+|nuORF ENST00000484153.1_1_1:11826815-11837330:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.9509582519531 3 497.950362 1490.82926 NaN NaN NaN NaN NaN NaN NaN 21.775 1 25.329 24.829 25.829 3.5533 0 0 0 0.38417 1 2039 2039 1.2148 0 1 18157 7019 11416 11422 21799 21799 0.1034755865596253 KMRLSLKFA 9 Unmodified _KMRLSLKFA_ 0 0 0 ENST00000376659.9_1_6:30295111-30295306:+|nuORF ENST00000376659.9_1_6:30295111-30295306:+|nuORF ENST00000376659.9_1_6:30295111-30295306:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.332763671875 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 93.871 1 97.607 97.107 98.107 3.736 0 0 0 0.4007 1 23337 23337 0.52476 0 1 18158 6453 11417 11423 21800 21800 0.10515245630222125 KMRLSLKFA 9 Unmodified _KMRLSLKFA_ 0 0 0 ENST00000376659.9_1_6:30295111-30295306:+|nuORF ENST00000376659.9_1_6:30295111-30295306:+|nuORF ENST00000376659.9_1_6:30295111-30295306:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.33251953125 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 94.323 1 97.944 97.444 98.444 3.6208 0 0 0 0.4007 1 22696 22696 0.52476 0 1 18159 6453 11417 11423 21801 21801 0.10515245630222125 KMRMKKQI 8 Unmodified _KMRMKKQI_ 0 0 0 ENST00000498070.5_1_1:202464586-202471035:+|nuORF ENST00000498070.5_1_1:202464586-202471035:+|nuORF ENST00000498070.5_1_1:202464586-202471035:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 532.3191528320312 2 531.817364 1061.62018 0.33722 0.00017934 -0.43544 -0.00023157 -0.098216 -5.2233E-05 531.8172487544897 85.957 0.14084 85.957 85.869 86.009 0 17 15 2 0 0 0 0.72333 1 20526 20526 0.69038 0 1 59082 18160 7115 11418 11424 21802 21802 0.09183019098304612 KMRMKKQI 8 Unmodified _KMRMKKQI_ 0 0 0 ENST00000498070.5_1_1:202464586-202471035:+|nuORF ENST00000498070.5_1_1:202464586-202471035:+|nuORF ENST00000498070.5_1_1:202464586-202471035:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 531.816650390625 2 531.817364 1061.62018 0.54751 0.00029118 -1.041 -0.00055361 -0.49347 -0.00026243 531.8167005515694 78.985 0.38887 82.606 82.245 82.634 3.6215 57 46 2 0 0 0 0.82752 1 18657 18657 0.69038 0.088878 1 164650 18161 7115 11418 11424 21803 21803 0.09183019098304612 KMRVHPPDK 9 Unmodified _KMRVHPPDK_ 0 0 0 REV__L1MEj_dup1109|chr8:17977665-17978746:+|1.9717661054343552|0.2212429309068556|3.16|151.0|37|3|sense REV__L1MEj_dup1109|chr8:17977665-17978746:+|1.9717661054343552|0.2212429309068556|3.16|151.0|37|3|sense MSMS UPN48_class_I_Rep_3 7 554.7596435546875 2 554.308218 1106.60188 NaN NaN NaN NaN NaN NaN NaN 90.915 1 94.762 94.262 95.262 3.847 0 0 0 0.39518 1 21561 21561 1.8442 0 1 + 18162 28811 11419 11425 21804 21804 0.052846004479533804 KMSCRDMATST 11 Unmodified _KMSCRDMATST_ 0 0 0 MLT1A0-int_dup635|chrX:131697901-131699607:+|3.579371697263308|0.0640480963904676|5.8|151.0|50|3|sense MLT1A0-int_dup635|chrX:131697901-131699607:+|3.579371697263308|0.0640480963904676|5.8|151.0|50|3|sense MLT1A0-int_dup635|chrX:131697901-131699607:+|3.579371697263308|0.0640480963904676|5.8|151.0|50|3|sense MSMS UPN48_class_I_Rep_3 7 615.7662353515625 2 615.767408 1229.52026 NaN NaN NaN NaN NaN NaN NaN 40.422 1 44.073 43.573 44.573 3.6509 0 0 0 0.38417 1 7186 7186 2.4985 1.0166 1 18163 16261 11420 11426 21805 21805 -0.0853163108845365 KMSSVVNLTI 10 Unmodified _KMSSVVNLTI_ 0 0 0 ENST00000263464.7_1_11:102194474-102194573:+|nuORF ENST00000263464.7_1_11:102194474-102194573:+|nuORF ENST00000263464.7_1_11:102194474-102194573:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 546.3095703125 2 546.310092 1090.60563 0.49011 0.00026775 -0.76187 -0.00041622 -0.27176 -0.00014846 546.3095733789737 53.089 0.48669 56.415 56.247 56.734 3.3266 45 27 3 0 0 0 0.51508 1 11948 11948 10.151 0.076642 1 138710 18164 5979 11421 11427 21806 21806 0.06395225431174367 KMSTLAAPNG 10 Unmodified _KMSTLAAPNG_ 0 0 0 REV__L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|51|3|sense REV__L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|51|3|sense MSMS UPN47_class_I_Rep_1 2 495.2586669921875 2 495.257859 988.501166 NaN NaN NaN NaN NaN NaN NaN 26.14 1 29.902 29.402 30.402 3.7624 0 0 0 0.53105 1 3695 3695 1.3295 0.5359 1 + 18165 24262 11422 11428 21807 21807 0.006455236744500326 KMSTLAAPNG 10 Unmodified _KMSTLAAPNG_ 0 0 0 REV__L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|51|3|sense REV__L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|51|3|sense MSMS UPN48_class_I_Rep_3 7 495.2585754394531 2 495.257859 988.501166 NaN NaN NaN NaN NaN NaN NaN 26.482 1 30.248 29.748 30.748 3.7663 0 0 0 0.53105 1 3358 3358 1.3295 0.5359 1 + 18166 24262 11422 11428 21808 21808 0.006455236744500326 KMSWAFFEY 9 Unmodified _KMSWAFFEY_ 0 0 0 ENST00000575812.1_1_16:3358749-3362115:+|nuORF ENST00000575812.1_1_16:3358749-3362115:+|nuORF ENST00000575812.1_1_16:3358749-3362115:+|nuORF MSMS UPN48_class_I_Rep_1 5 604.7750854492188 2 604.775885 1207.53722 NaN NaN NaN NaN NaN NaN NaN 31.658 1 35.192 34.692 35.692 3.5342 0 0 0 0.39428 1 4713 4713 2.0598 0 1 18167 7529 11423 11429 21809 21809 -0.058250191486877156 KMTHRMKRKYL 11 Unmodified _KMTHRMKRKYL_ 0 0 0 L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 497.9506530761719 3 497.951486 1490.83263 NaN NaN NaN NaN NaN NaN NaN 21.77 1 25.324 24.824 25.824 3.5533 0 0 0 0.38417 1 2037 2037 0.50596 0 1 18168 10972 11424 11430 21810 21810 0.10684485438332558 KMTHRMKRKYL 11 Unmodified _KMTHRMKRKYL_ 0 0 0 L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.95159912109375 3 497.951486 1490.83263 0.35221 0.00017539 -1.0347 -0.00051522 -0.68247 -0.00033983 497.95104735187255 21.397 0.27297 25.043 24.902 25.175 3.6459 50 30 2 0 0 0 0.66092 1 1995 1995 2.2527 1.0379 1 86836 18169 10972 11424 11430 21811 21811 0.10684485438332558 KMTHRMKRKYL 11 Unmodified _KMTHRMKRKYL_ 0 0 0 L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense L1MB8_dup16377|chr22:49810406-49811407:+|1.7329413942532652|0.1369221408825431|3.66|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 497.951416015625 3 497.951486 1490.83263 NaN NaN NaN NaN NaN NaN NaN 21.067 1 24.734 24.234 25.234 3.6667 0 0 0 0.38417 1 1915 1915 1.0136 0.55906 1 18170 10972 11424 11430 21812 21812 0.10684485438332558 KMVIFILY 8 Unmodified _KMVIFILY_ 0 0 0 L1MB3_dup2044|chr2:99631337-99632008:-|1.1890533281042428|0.0587119781279337|4.34|150.0|17|2|sense L1MB3_dup2044|chr2:99631337-99632008:-|1.1890533281042428|0.0587119781279337|4.34|150.0|17|2|sense L1MB3_dup2044|chr2:99631337-99632008:-|1.1890533281042428|0.0587119781279337|4.34|150.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.8067016601562 2 513.806457 1025.59836 0.26961 0.00013853 1.5404 0.00079147 1.81 0.00093 513.8066037716496 61.54 0.56724 64.908 64.711 65.278 3.3681 67 40 2 0 0 0 0.82752 1 14412 14412 6.3541 3.0728 1 297320 18171 10397 11425 11431 21813 21813 0.08658537621408868 KMVLFGWFI 9 Unmodified _KMVLFGWFI_ 0 0 0 REV__L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|51|1|anti-sense REV__L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|51|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 570.2662963867188 2 570.817356 1139.62016 0.45011 0.00025693 2.7767 0.001585 3.2268 0.0018419 570.8188002077537 71.74 0.14981 74.959 74.928 75.078 3.2188 12 9 2 0 0 0 0.12281 1 17622 17622 4.3292 0.38484 1 40965 + 18172 30467 11426 11432 21814 21814 0.05593342369979837 KMVLFGWFI 9 Unmodified _KMVLFGWFI_ 0 0 0 REV__L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|51|1|anti-sense REV__L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|51|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 570.817356 1139.62016 0.4217 0.00024071 1.7911 0.0010224 2.2128 0.0012631 570.8187173615352 71.533 0.050995 74.823 74.797 74.848 3.2899 -0.067878 -0.00090813 NaN 4.3292 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 35554 + 18173 30467 11426 11432 0.05593342369979837 KMWTMMFPH 9 Unmodified _KMWTMMFPH_ 0 0 0 REV__ENST00000456150.5_1_3:47618647-47618728:-|nuORF REV__ENST00000456150.5_1_3:47618647-47618728:-|nuORF MSMS UPN48_class_I_Rep_1 5 604.7752685546875 2 604.774308 1207.53406 NaN NaN NaN NaN NaN NaN NaN 22.228 1 25.781 25.281 26.281 3.5533 0 0 0 0.40038 1 2144 2144 0.6015 0 1 + 18174 22410 11427 11433 21815 21815 -0.06140308798717342 KMYFVIIL 8 Unmodified _KMYFVIIL_ 0 0 0 L1MEc_dup14974|chr14:49816848-49817160:+|1.814811959846741|0.2309431770096683|2.97|151.0|1|1|sense L1MEc_dup14974|chr14:49816848-49817160:+|1.814811959846741|0.2309431770096683|2.97|151.0|1|1|sense L1MEc_dup14974|chr14:49816848-49817160:+|1.814811959846741|0.2309431770096683|2.97|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.31103515625 2 513.806457 1025.59836 0.26961 0.00013853 1.5404 0.00079147 1.81 0.00093 513.8066037716496 61.54 0.56724 64.908 64.711 65.278 3.3681 67 40 2 0 0 0 0.82752 1 14465 14465 2.8892 0 1 297320 18175 13030 11428 11434 21816 21816 0.08658537621408868 KMYHKLSS 8 Unmodified _KMYHKLSS_ 0 0 0 REV__ENST00000369037.8_1_6:107474334-107474451:-|nuORF REV__ENST00000369037.8_1_6:107474334-107474451:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.26220703125 2 497.262945 992.511337 -0.25257 -0.00012559 0.30179 0.00015007 0.049216 2.4473E-05 497.2629631970701 37.65 1.1169 41.315 40.937 42.054 3.6652 198 84 3 0 0 0 0.82752 1 7068 7068 2.3027 0.24298 1 867850 + 18176 21946 11429 11435 21817 21817 0.014781313996763856 KMYVYGCIY 9 Unmodified _KMYVYGCIY_ 0 0 0 L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|3|1|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|3|1|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 570.2672729492188 2 570.266838 1138.51912 NaN NaN NaN NaN NaN NaN NaN 66.574 1 69.932 69.432 70.432 3.3576 0 0 0 0.381 1 15957 15957 5.2307 0 1 18177 12942 11430 11436 21818 21818 -0.044594773950393574 KNAGKPTE 8 Unmodified _KNAGKPTE_ 0 0 0 MLT1C_dup4415|chr4:39725951-39726184:-|1.8905506228689104|0.0052042270343704|8.5|151.0|2|1|sense MLT1C_dup4415|chr4:39725951-39726184:-|1.8905506228689104|0.0052042270343704|8.5|151.0|2|1|sense MLT1C_dup4415|chr4:39725951-39726184:-|1.8905506228689104|0.0052042270343704|8.5|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 422.5924377441406 2 422.729792 843.445031 0.0039384 1.6649E-06 -0.22789 -9.6336E-05 -0.22395 -9.4671E-05 422.72971086062745 50.264 0.11471 53.885 53.821 53.936 3.621 8 5 2 0 0 0 0.72333 1 10193 10193 2.3027 0 1 45132 18178 16311 11431 11437 21819 21819 0.017046388292783377 KNAIIFLITKF 11 Unmodified _KNAIIFLITKF_ 0 0 0 REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|34|3|sense REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|34|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 437.27630615234375 3 436.607708 1306.80129 0.17757 7.7529E-05 0.061261 2.6747E-05 0.23883 0.00010428 436.94190508026065 60.491 0.25388 63.97 63.858 64.112 3.4785 40 21 3 0 0 0 0.67356 1 13356 13356 1.1098 0.41209 1 94942 + 18179 26344 11432 11438 21820 21820 0.16016558947490012 KNAIIFLITKF 11 Unmodified _KNAIIFLITKF_ 0 0 0 REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|34|3|sense REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|34|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 436.607708 1306.80129 0.17757 7.7529E-05 0.061261 2.6747E-05 0.23883 0.00010428 436.94190508026065 60.491 0.25388 63.97 63.858 64.112 3.4785 -0.030247 8.9156E-05 NaN 1.1098 40 21 3 NaN NaN NaN NaN 0 NaN NaN 0 94942 + 18180 26344 11432 11438 0.16016558947490012 KNAIIFLITKF 11 Unmodified _KNAIIFLITKF_ 0 0 0 REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|34|3|sense REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|34|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.607708 1306.80129 0.13244 5.7826E-05 -0.17091 -7.4621E-05 -0.038469 -1.6796E-05 436.60798462428613 60.514 0.11185 64.03 63.976 64.088 3.5169 0.030247 -0.00021495 NaN 1.1098 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 97650 + 18181 26344 11432 11438 0.16016558947490012 KNANKFLY 8 Unmodified _KNANKFLY_ 0 0 0 REV__Charlie1_dup1070|chr9:123249915-123250543:+|1.258140243472459|0.0177244175575366|6.15|151.0|35|3|anti-sense REV__Charlie1_dup1070|chr9:123249915-123250543:+|1.258140243472459|0.0177244175575366|6.15|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.2772216796875 2 499.276909 996.539266 -0.23742 -0.00011854 -0.056821 -2.8369E-05 -0.29424 -0.00014691 499.27686223680183 38.901 0.7891 42.566 42.278 43.068 3.6652 71 48 2 0 0 0 0.82752 1 7664 7664 2.3027 0 1 86369 + 18182 17267 11433 11439 21821 21821 0.040857776514030775 KNANLIKY 8 Unmodified _KNANLIKY_ 0 0 0 REV__L1MA4A_dup1285|chr3:149860302-149861930:+|1.0749393265363318|0.0428205044003263|4.65|151.0|21|1|sense REV__L1MA4A_dup1285|chr3:149860302-149861930:+|1.0749393265363318|0.0428205044003263|4.65|151.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 482.271240234375 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 25.958 1 25.958 25.458 26.458 0 0 0 0 0.39819 1 3641 3641 8.5933 0 1 + 18183 25236 11434 11440 21822 21822 0.07214064168454115 KNCLHRRKL 9 Unmodified _KNCLHRRKL_ 0 0 0 REV__L1PA7_dup815|chr1:231944773-231948615:+|2.503148983573096|0.0470415053081171|5.73|151.0|28|1|sense REV__L1PA7_dup815|chr1:231944773-231948615:+|2.503148983573096|0.0470415053081171|5.73|151.0|28|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3480224609375 2 584.348209 1166.68186 0.40087 0.00023425 -0.65532 -0.00038293 -0.25444 -0.00014868 584.3476783214531 36.148 0.12224 36.148 36.107 36.229 0 13 9 2 0 0 0 0.50088 1 6670 6670 0.52476 0 1 242260 + 18184 30172 11435 11441 21823 21823 0.10519086841804892 KNDIIWLIWYK 11 Unmodified _KNDIIWLIWYK_ 0 0 0 MER4-int_dup252|chr2:85380825-85381835:-|1.057086177188785|0.3179565343463262|1.73|151.0|11|1|sense MER4-int_dup252|chr2:85380825-85381835:-|1.057086177188785|0.3179565343463262|1.73|151.0|11|1|sense MER4-int_dup252|chr2:85380825-85381835:-|1.057086177188785|0.3179565343463262|1.73|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 497.9518127441406 3 497.950134 1490.82857 NaN NaN NaN NaN NaN NaN NaN 21.658 1 25.373 24.873 25.873 3.7144 0 0 0 0.38417 1 2075 2075 2.2527 1.0379 1 18185 15942 11436 11442 21824 21824 0.10279042487877632 KNEEGKGLF 9 Unmodified _KNEEGKGLF_ 0 0 0 REV__HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|56|3|sense REV__HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|56|3|sense MSMS UPN47_class_I_Rep_1 2 511.2697448730469 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 49.635 1 53.295 52.795 53.795 3.6592 0 0 0 0.25702 1 10814 10814 13.042 1.5478 1 + 18186 23926 11437 11443 21825 21825 0.014568660635859487 KNEEGKGLF 9 Unmodified _KNEEGKGLF_ 0 0 0 REV__HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|56|3|sense REV__HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|56|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.2705993652344 2 511.269281 1020.52401 0.11407 5.8319E-05 3.9247 0.0020066 4.0387 0.0020649 511.26997293965815 50.039 0.6012 53.382 53.041 53.642 3.3431 63 33 3 0 0 0 0.36392 1 11002 11002 10.074 1.3285 1 86649 + 18187 23926 11437 11443 21826 21826 0.014568660635859487 KNEHKTILKT 10 Unmodified _KNEHKTILKT_ 0 0 0 ENST00000537569.1_1_12:118597941-118599673:-|nuORF;ENSG00000135090|ENST00000392533|TAOK3;chr12:118266759-118359506|151|16.24|0.53|4.95|-|ENST00000419821|TAOK3,TAOK3 ENST00000537569.1_1_12:118597941-118599673:-|nuORF ENST00000537569.1_1_12:118597941-118599673:-|nuORF MSMS UPN46_class_I_Rep_3 1 606.3611450195312 2 606.358962 1210.70337 NaN NaN NaN NaN NaN NaN NaN 33.507 1 33.507 33.007 34.007 0 0 0 0 0.53105 1 5869 5869 1.1933 0.66858 1 18188 577 11438 11444 21827 21827 0.10644750351502807 KNENNLEEFV 10 Unmodified _KNENNLEEFV_ 0 0 0 REV__nc|ENSG00000186399|I6L899-2|GOLGA8R REV__nc|ENSG00000186399|I6L899-2|GOLGA8R MULTI-MSMS UPN47_class_I_Rep_1 2 618.2984008789062 2 618.298767 1234.58298 0.39849 0.00024638 -0.087463 -5.4078E-05 0.31103 0.00019231 618.2986428071991 65.499 0.90744 68.855 68.488 69.396 3.3557 128 52 4 0 0 0 0.56078 1 15535 15535 3.2813 0 1 597730 + 18189 20639 11439 11445 21828 21828 -0.0249270243277806 KNFIFSKTIL 10 Unmodified _KNFIFSKTIL_ 0 0 0 L1MB4_dup6359|chr12:96343597-96344835:+|1.009422724888967|0.0283436765966484|5.15|151.0|12|1|sense L1MB4_dup6359|chr12:96343597-96344835:+|1.009422724888967|0.0283436765966484|5.15|151.0|12|1|sense L1MB4_dup6359|chr12:96343597-96344835:+|1.009422724888967|0.0283436765966484|5.15|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 404.2433776855469 3 404.244658 1209.71214 NaN NaN NaN NaN NaN NaN NaN 40.903 1 44.409 43.909 44.909 3.506 0 0 0 0.53105 1 7392 7392 1.9064 0.31409 1 18190 10548 11440 11446 21829 21829 0.11567723988014222 KNFLHSSF 8 Unmodified _KNFLHSSF_ 0 0 0 ENSG00000180257|ENST00000444460|ZNF816 ENSG00000180257|ENST00000444460|ZNF816 ENSG00000180257|ENST00000444460|ZNF816 MULTI-MSMS UPN47_class_I_Rep_1 2 490.2519836425781 2 490.253434 978.492316 -0.28182 -0.00013816 -0.56818 -0.00027855 -0.85 -0.00041671 490.25306649742134 34.636 0.40875 38.322 38.102 38.511 3.6859 57 32 2 0 0 0 0.82752 1 6288 6288 7.9102 0.62092 1 91361 18191 4884 11441 11447 21830 21830 0.0022091810029678527 KNFLHSSF 8 Unmodified _KNFLHSSF_ 0 0 0 ENSG00000180257|ENST00000444460|ZNF816 ENSG00000180257|ENST00000444460|ZNF816 ENSG00000180257|ENST00000444460|ZNF816 MULTI-MSMS UPN47_class_I_Rep_3 4 490.25335693359375 2 490.253434 978.492316 -0.35455 -0.00017382 -0.34036 -0.00016686 -0.69491 -0.00034068 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 1 6611 6611 7.9102 0.62092 1 61780 18192 4884 11441 11447 21831 21831 0.0022091810029678527 KNFLNVAAF 9 Unmodified _KNFLNVAAF_ 0 0 0 REV__ENSG00000100485.12,SOS2,chr14,-,I2.1,50215433,50230835|27|11.77|1|intron REV__ENSG00000100485.12,SOS2,chr14,-,I2.1,50215433,50230835|27|11.77|1|intron MSMS UPN48_class_I_Rep_2 6 512.2855224609375 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 56.245 1 59.779 59.279 60.279 3.5333 0 0 0 0.38639 1 12062 12062 3.9444 0.66309 1 + 18193 18115 11442 11448 21832 21832 0.04454064168464811 KNFLSDKRWQI 11 Unmodified _KNFLSDKRWQI_ 0 0 0 REV__L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|30|3|sense REV__L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|30|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.26470947265625 3 478.933254 1433.77793 0.13142 6.2943E-05 0.46241 0.00022146 0.59383 0.00028441 479.2678579633879 39.893 0.055183 43.543 43.526 43.581 3.6509 5 4 2 0 0 0 22.551 1 7038 7038 0.50596 0 1 47617 + 18194 26683 11443 11449 21833 21833 0.07839513162912226 KNFLSDKRWQI 11 Unmodified _KNFLSDKRWQI_ 0 0 0 REV__L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|30|3|sense REV__L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|30|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 478.933254 1433.77793 0.18307 8.768E-05 2.3548 0.0011278 2.5379 0.0012155 479.26885896793476 39.533 0.035 43.263 43.252 43.287 3.7297 -0.14014 0.0014895 NaN 0.50596 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 45451 + 18195 26683 11443 11449 0.07839513162912226 KNFNRNWQ 8 Unmodified _KNFNRNWQ_ 0 0 0 ENST00000394534.6_2_7:91708513-91708564:+|nuORF ENST00000394534.6_2_7:91708513-91708564:+|nuORF ENST00000394534.6_2_7:91708513-91708564:+|nuORF MSMS UPN48_class_I_Rep_1 5 553.7775268554688 2 553.778139 1105.54173 NaN NaN NaN NaN NaN NaN NaN 39.661 1 43.166 42.666 43.666 3.5048 0 0 0 0.40625 1 7030 7030 2.3027 0.24298 1 18196 6544 11444 11450 21834 21834 -0.0068237389093610545 KNFQQSWFAT 10 Unmodified _KNFQQSWFAT_ 0 0 0 REV__MSTA-int_dup1111|chr6:2324314-2325918:+|2.8356352985679267|0.0695640520035331|5.35|151.0|60|1|anti-sense REV__MSTA-int_dup1111|chr6:2324314-2325918:+|2.8356352985679267|0.0695640520035331|5.35|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 628.8046264648438 2 628.806562 1255.59857 NaN NaN NaN NaN NaN NaN NaN 59.636 1 63.035 62.535 63.535 3.3982 0 0 0 0.53105 1 13863 13863 1.4819 0 1 + 18197 31858 11445 11451 21835 21835 -0.01900371125066158 KNFRVWQTH 9 Unmodified _KNFRVWQTH_ 0 0 0 REV__Charlie1a_dup5149|chr17:16116284-16117051:-|1.3482122911600132|0.0615944998006045|4.45|151.0|57|3|anti-sense REV__Charlie1a_dup5149|chr17:16116284-16117051:-|1.3482122911600132|0.0615944998006045|4.45|151.0|57|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 406.21881103515625 3 405.884235 1214.63087 0.11238 4.5612E-05 -0.15769 -6.4005E-05 -0.045316 -1.8393E-05 405.8840991674358 65.263 1.4742 68.743 68.117 69.591 3.4792 180 104 3 0 0 0 0.49573 1 14871 14871 1.0715 1.0715 1 362750 + 18198 17339 11446 11452 21836 21836 0.03214461068591845 KNFSCFRGQ 9 Unmodified _KNFSCFRGQ_ 0 0 0 REV__MER20B_dup3283|chr14:95441826-95442193:+|1.5710171672347777|0.1047364956698906|3.91|151.0|2|1|sense REV__MER20B_dup3283|chr14:95441826-95442193:+|1.5710171672347777|0.1047364956698906|3.91|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 543.7627563476562 2 543.761101 1085.50765 NaN NaN NaN NaN NaN NaN NaN 21.03 1 24.678 24.178 25.178 3.648 0 0 0 0.38639 1 1913 1913 3.9444 1.6417 1 + 18199 31164 11447 11453 21837 21837 -0.03168538374166019 KNFTEGPGKF 10 Unmodified _KNFTEGPGKF_ 0 0 0 REV__L1ME2_dup10094|chr14:61391760-61393397:-|1.1761044452124725|0.0239913006559024|5.62|151.0|3|1|sense REV__L1ME2_dup10094|chr14:61391760-61393397:-|1.1761044452124725|0.0239913006559024|5.62|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 562.7925415039062 2 562.790381 1123.56621 NaN NaN NaN NaN NaN NaN NaN 43.329 1 46.687 46.187 47.187 3.358 0 0 0 0.53105 1 8927 8927 5.7319 0.50118 1 + 18200 27814 11448 11454 21838 21838 0.009368414719574503 KNFTEGPGKF 10 Unmodified _KNFTEGPGKF_ 0 0 0 REV__L1ME2_dup10094|chr14:61391760-61393397:-|1.1761044452124725|0.0239913006559024|5.62|151.0|3|1|sense REV__L1ME2_dup10094|chr14:61391760-61393397:-|1.1761044452124725|0.0239913006559024|5.62|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.7921142578125 2 562.790381 1123.56621 0.14514 8.1683E-05 2.3737 0.0013359 2.5188 0.0014176 562.7918687402662 43.547 0.48669 46.789 46.679 47.166 3.2419 33 28 2 0 0 0 0.56118 1 9098 9098 2.9952 0.49676 1 69677 + 18201 27814 11448 11454 21839 21839 0.009368414719574503 KNFVEDVVY 9 Unmodified _KNFVEDVVY_ 0 0 0 REV__MLT1A1_dup6566|chr21:37392729-37393121:-|1.2183779247336852|0.0126296355253847|6.59|151.0|22|2|anti-sense REV__MLT1A1_dup6566|chr21:37392729-37393121:-|1.2183779247336852|0.0126296355253847|6.59|151.0|22|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 556.251708984375 2 556.784764 1111.55498 0.44937 0.0002502 0.449 0.00025 0.89838 0.0005002 556.7845697347683 72.132 0.68576 75.351 75.089 75.775 3.2188 123 58 4 0 0 0 0.12207 1 17781 17781 5.7319 0 1 142690 + 18202 31612 11449 11455 21840 21840 0.003660193778159737 KNFVEDVVY 9 Unmodified _KNFVEDVVY_ 0 0 0 REV__MLT1A1_dup6566|chr21:37392729-37393121:-|1.2183779247336852|0.0126296355253847|6.59|151.0|22|2|anti-sense REV__MLT1A1_dup6566|chr21:37392729-37393121:-|1.2183779247336852|0.0126296355253847|6.59|151.0|22|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 556.784764 1111.55498 0.38573 0.00021477 -0.26355 -0.00014674 0.12218 6.8029E-05 556.7843771150951 71.872 0.48541 75.247 75.07 75.555 3.3751 -0.11021 -0.00047081 NaN 13.906 58 39 3 NaN NaN NaN NaN 0 NaN NaN 0 109700 + 18203 31612 11449 11455 0.003660193778159737 KNFYLEDTN 9 Unmodified _KNFYLEDTN_ 0 0 0 L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|92|3|sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|92|3|sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|92|3|sense MSMS UPN48_class_I_Rep_1 5 571.78515625 2 572.269478 1142.5244 NaN NaN NaN NaN NaN NaN NaN 63.678 1 67.136 66.636 67.636 3.4578 0 0 0 0.39518 1 14354 14354 1.8442 0 1 18204 13243 11450 11456 21841 21841 -0.04115759007231645 KNGCPGWI 8 Unmodified _KNGCPGWI_ 0 0 0 REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 438.2165832519531 2 437.71563 873.416708 0.15357 6.722E-05 -0.60881 -0.00026649 -0.45524 -0.00019926 437.71530478119934 100.54 0.17368 100.54 100.44 100.61 0 30 19 2 0 0 0 0.82752 1 24498 24498 0.79363 0 1 99344 + 18205 22790 11451 11457 21842 21842 -0.0250638235166889 KNGCPGWI 8 Unmodified _KNGCPGWI_ 0 0 0 REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 437.71563 873.416708 0.11183 4.8951E-05 -0.99546 -0.00043573 -0.88363 -0.00038678 437.7150826910118 96.389 0.32422 100.17 100.12 100.44 3.7804 -0.17967 3.7024E-05 NaN 0.79363 55 41 2 NaN NaN NaN NaN 0 NaN NaN 0 302500 + 18206 22790 11451 11457 -0.0250638235166889 KNGCPGWI 8 Unmodified _KNGCPGWI_ 0 0 0 REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF REV__ENST00000521949.1_1_8:99244015-99248416:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 437.71563 873.416708 0.14203 6.2169E-05 -1.2722 -0.00055686 -1.1302 -0.00049469 437.7150657656172 96.433 0.5055 100.34 100.07 100.57 3.9084 -0.007589 -0.00020523 NaN 0.79363 89 69 2 NaN NaN NaN NaN 0 NaN NaN 0 268680 + 18207 22790 11451 11457 -0.0250638235166889 KNGDLIRK 8 Unmodified _KNGDLIRK_ 0 0 0 REV__ENSG00000105576|ENST00000425528|TNPO2 REV__ENSG00000105576|ENST00000425528|TNPO2 MSMS UPN48_class_I_Rep_3 7 472.2879333496094 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 106.18 1 109.87 109.37 110.37 3.6899 0 0 0 0.40625 1 25046 25046 2.3027 0 1 + 18208 18295 11452 11458 21843 21843 0.08748582400005489 KNGIYNITV 9 Unmodified _KNGIYNITV_ 0 0 0 nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2 nc|ENSG00000134755|Q02487-2|DSC2 nc|ENSG00000134755|Q02487-2|DSC2 MULTI-MSMS UPN47_class_I_Rep_2 3 511.287841796875 2 511.287474 1020.5604 0.18622 9.5212E-05 -0.067302 -3.4411E-05 0.11892 6.0801E-05 511.287406521301 59.605 0.75656 62.878 62.5 63.257 3.2731 89 50 2 0 0 0 0.43153 1 13897 13897 6.2058 0 1 240070 18209 2863 11453 11459 21844 21844 0.050937429602640805 KNGKERPL 8 Unmodified _KNGKERPL_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|129|3|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|129|3|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|129|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.2799377441406 2 471.279983 940.545414 0.023342 1.1E-05 -0.11075 -5.2196E-05 -0.087412 -4.1195E-05 471.27996162535766 83.77 0.6725 87.12 86.757 87.429 3.35 102 79 2 0 0 0 0.82752 1 20957 20957 0.69038 0 1 111200 18210 13692 11454 11460 21845 21845 0.0727629588294576 KNGKNAINR 9 Unmodified _KNGKNAINR_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 507.794921875 2 507.793789 1013.57303 0.31189 0.00015838 1.1058 0.00056154 1.4177 0.00071992 507.7942710802692 107.77 0.079567 111.45 111.41 111.49 3.6783 11 7 2 0 0 0 0.35081 1 25497 25497 10.824 3.5347 1 4701600 + 18211 28931 11455 11461 21846 21846 0.06678199143175334 KNGKNAINR 9 Unmodified _KNGKNAINR_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 507.793789 1013.57303 0.34731 0.00017636 1.0904 0.00055372 1.4378 0.00073008 507.79421305725964 107.84 0.098022 111.37 111.31 111.41 3.5345 -0.058378 -0.00016702 NaN 10.824 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3808200 + 18212 28931 11455 11461 0.06678199143175334 KNGKNAINR 9 Unmodified _KNGKNAINR_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.793789 1013.57303 0.31786 0.00016141 1.4813 0.0007522 1.7992 0.0009136 507.7944586939547 107.82 0.077148 111.36 111.33 111.41 3.5382 -0.066767 0.00022993 NaN 10.824 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4226200 + 18213 28931 11455 11461 0.06678199143175334 KNGKNAINR 9 Unmodified _KNGKNAINR_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 507.793789 1013.57303 0.31189 0.00015838 1.1058 0.00056154 1.4177 0.00071992 507.7942710802692 107.77 0.079567 111.45 111.41 111.49 3.6783 0.020685 -0.00015138 NaN 10.824 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4701600 + 18214 28931 11455 11461 0.06678199143175334 KNGKNAINR 9 Unmodified _KNGKNAINR_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|39|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 507.793789 1013.57303 0.27425 0.00013926 0.81559 0.00041415 1.0898 0.00055341 507.7940506767833 107.79 0.092934 111.47 111.44 111.53 3.6813 0.04196 -0.00044616 NaN 10.824 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 6354700 + 18215 28931 11455 11461 0.06678199143175334 KNGLYYIR 8 Unmodified _KNGLYYIR_ 0 0 0 REV__ENST00000560194.1_1_15:65804381-65804891:-|nuORF REV__ENST00000560194.1_1_15:65804381-65804891:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 513.7894287109375 2 513.790184 1025.56581 -0.29262 -0.00015034 -0.6067 -0.00031171 -0.89932 -0.00046206 513.7896727064946 34.826 1.0666 38.251 37.832 38.898 3.4253 132 74 2 0 0 0 0.82752 1 6459 6459 2.5775 0 1 181630 + 18216 23016 11456 11462 21847 21847 0.05405466542720205 KNGRNLKI 8 Unmodified _KNGRNLKI_ 0 0 0 L1PB1_dup391|chr1:116547629-116548512:-|1.3254316450165498|0.0128212831755309|6.69|151.0|7|1|sense;L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|39|3|sense L1PB1_dup391|chr1:116547629-116548512:-|1.3254316450165498|0.0128212831755309|6.69|151.0|7|1|sense L1PB1_dup391|chr1:116547629-116548512:-|1.3254316450165498|0.0128212831755309|6.69|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 471.79510498046875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 35.305 1 38.569 38.069 39.069 3.2639 0 0 0 0.40746 1 6524 6524 0.69038 0 1 18217 15100 11457 11463 21848 21848 0.10392288636876401 KNHEWMLY 8 Unmodified _KNHEWMLY_ 0 0 0 L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|99|2|anti-sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|99|2|anti-sense L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|99|2|anti-sense MSMS UPN48_class_I_Rep_2 6 560.7654418945312 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 36.695 1 40.397 39.897 40.897 3.7021 0 0 0 0.40738 1 6194 6194 0.79363 0 1 18218 11817 11458 11464 21849 21849 -0.037827700886509774 KNHFRMKIK 9 Unmodified _KNHFRMKIK_ 0 0 0 HAL1M8_dup87|chr1:173769922-173770415:+|1.492297273120929|0.1077304104704865|3.79|151.0|21|3|sense HAL1M8_dup87|chr1:173769922-173770415:+|1.492297273120929|0.1077304104704865|3.79|151.0|21|3|sense HAL1M8_dup87|chr1:173769922-173770415:+|1.492297273120929|0.1077304104704865|3.79|151.0|21|3|sense MSMS UPN48_class_I_Rep_1 5 601.3526000976562 2 601.35296 1200.69137 NaN NaN NaN NaN NaN NaN NaN 87.173 1 90.792 90.292 91.292 3.6187 0 0 0 0.39518 1 20887 20887 1.8442 0 1 18219 7951 11459 11465 21850 21850 0.09904855127319934 KNHNCFLL 8 Unmodified _KNHNCFLL_ 0 0 0 L1MB4_dup287|chr1:113945149-113945967:-|5.119089819497199|0.0276260395031074|7.53|151.0|46|2|anti-sense L1MB4_dup287|chr1:113945149-113945967:-|5.119089819497199|0.0276260395031074|7.53|151.0|46|2|anti-sense L1MB4_dup287|chr1:113945149-113945967:-|5.119089819497199|0.0276260395031074|7.53|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_2 3 494.7568664550781 2 494.755287 987.496021 NaN NaN NaN NaN NaN NaN NaN 26.598 1 30.092 29.592 30.592 3.4945 0 0 0 0.40604 1 3873 3873 2.5775 0 1 18220 10494 11460 11466 21851 21851 0.0017726460249605225 KNIIILILI 9 Unmodified _KNIIILILI_ 0 0 0 REV__ENSG00000181017|ENST00000641377|OR56B2P REV__ENSG00000181017|ENST00000641377|OR56B2P MSMS UPN48_class_I_Rep_3 7 526.8750610351562 2 526.875728 1051.7369 NaN NaN NaN NaN NaN NaN NaN 98.021 1 101.92 101.42 102.42 3.9022 0 0 0 0.3264 1 23225 23225 9.3474 0 1 + 18221 20721 11461 11467 21852 21852 0.21310403861389204 KNIKTKTAIAK 11 Unmodified _KNIKTKTAIAK_ 0 0 0 REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|38|3|sense REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 405.9326477050781 3 405.930962 1214.77106 NaN NaN NaN NaN NaN NaN NaN 38.23 1 38.23 37.73 38.73 0 0 0 0 0.38417 1 7261 7261 1.2148 0.14337 1 + 18222 30756 11462 11468 21853 21853 0.17226200282311765 KNIKTKTAIAK 11 Unmodified _KNIKTKTAIAK_ 0 0 0 REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|38|3|sense REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 405.9324035644531 3 405.930962 1214.77106 NaN NaN NaN NaN NaN NaN NaN 38.997 1 38.997 38.497 39.497 0 0 0 0 0.38417 1 7466 7466 1.2148 0.70888 1 + 18223 30756 11462 11468 21854 21854 0.17226200282311765 KNIKTKTAIAK 11 Unmodified _KNIKTKTAIAK_ 0 0 0 REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|38|3|sense REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|38|3|sense MSMS UPN47_class_I_Rep_3 4 405.93182373046875 3 405.930962 1214.77106 NaN NaN NaN NaN NaN NaN NaN 34.748 1 38.012 37.512 38.512 3.2639 0 0 0 0.38417 1 6354 6354 1.2148 0.14337 1 + 18224 30756 11462 11468 21855 21855 0.17226200282311765 KNIPFVVFI 9 Unmodified _KNIPFVVFI_ 0 0 0 REV__L1MC4_dup5521|chr3:172197351-172198548:-|6.176493725537902|0.0411773057661185|7.23|151.0|47|1|anti-sense REV__L1MC4_dup5521|chr3:172197351-172198548:-|6.176493725537902|0.0411773057661185|7.23|151.0|47|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 539.3023681640625 2 538.828778 1075.643 0.36092 0.00019447 0.038343 2.066E-05 0.39926 0.00021513 538.8287647329183 92.707 0.098251 96.331 96.296 96.394 3.624 20 13 2 0 0 0 0.12444 1 22287 22287 2.0598 2.0598 1 144690 + 18225 26930 11463 11469 21856 21856 0.10820684759096366 KNIPFVVFI 9 Unmodified _KNIPFVVFI_ 0 0 0 REV__L1MC4_dup5521|chr3:172197351-172198548:-|6.176493725537902|0.0411773057661185|7.23|151.0|47|1|anti-sense REV__L1MC4_dup5521|chr3:172197351-172198548:-|6.176493725537902|0.0411773057661185|7.23|151.0|47|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 538.828778 1075.643 0.4662 0.0002512 -0.1429 -7.7001E-05 0.3233 0.0001742 538.8286061277694 92.621 0.16321 96.384 96.333 96.496 3.7629 0.026423 -0.00010841 NaN 2.0598 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 110370 + 18226 26930 11463 11469 0.10820684759096366 KNIQQKKWQ 9 Unmodified _KNIQQKKWQ_ 0 0 0 REV__L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|79|3|sense REV__L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|79|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 600.8456420898438 2 600.846022 1199.67749 0.21938 0.00013181 -1.5092 -0.00090682 -1.2899 -0.00077501 600.8453033484411 48.692 0.10817 52.374 52.319 52.427 3.6819 10 6 2 0 0 0 0.46434 1 10534 10534 4.3292 0 1 58582 + 18227 24470 11464 11470 21857 21857 0.08563900899889632 KNIVREIFF 9 Unmodified _KNIVREIFF_ 0 0 0 REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__nc|ENSG00000158486|Q8TD57|DNAH3 MSMS UPN48_class_I_Rep_3 7 583.3418579101562 2 583.340041 1164.66553 NaN NaN NaN NaN NaN NaN NaN 78.859 1 82.48 81.98 82.98 3.6216 0 0 0 0.39428 1 18682 18682 2.0598 0.40713 1 + 18228 32023 11465 11471 21858 21858 0.0897828415670574 KNKGARQL 8 Unmodified _KNKGARQL_ 0 0 0 REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2 REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2 MULTI-MSMS UPN46_class_I_Rep_3 1 457.7799377441406 2 457.780151 913.545748 0.20409 9.3426E-05 -0.24827 -0.00011366 -0.044189 -2.0229E-05 457.78005282432116 85.027 0.13466 85.027 84.978 85.112 0 15 12 2 0 0 0 0.82752 1 20266 20266 8.5933 0 1 311150 + 18229 20982 11466 11472 21859 21859 0.08551715602800414 KNKKIATYK 9 Unmodified _KNKKIATYK_ 0 0 0 REV__L1PA16_dup12676|chr17:20264819-20266254:-|1.2007342089442958|0.0198946560332943|5.92|151.0|43|3|sense REV__L1PA16_dup12676|chr17:20264819-20266254:-|1.2007342089442958|0.0198946560332943|5.92|151.0|43|3|sense MSMS UPN47_class_I_Rep_1 2 547.343017578125 2 547.340041 1092.66553 NaN NaN NaN NaN NaN NaN NaN 92.774 1 96.495 95.995 96.995 3.7209 0 0 0 0.39598 1 23104 23104 1.6526 0.96225 1 + 18230 29351 11467 11473 21860 21860 0.12290284156688358 KNKKQEVKTY 10 Unmodified _KNKKQEVKTY_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|16|1|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|16|1|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 422.5926818847656 3 422.578588 1264.71394 NaN NaN NaN NaN NaN NaN NaN 61.163 1 64.676 64.176 65.176 3.5128 0 0 0 0.53105 1 13494 13494 1.9064 0.1641 1 18231 8592 11468 11474 21861 21861 0.09216733005951028 KNKLLKSGMKA 11 Unmodified _KNKLLKSGMKA_ 0 0 0 L1MB4_dup1863|chr3:183848917-183850116:+|1.6503878578735045|0.1967283690440462|3.07|149.0|25|2|sense L1MB4_dup1863|chr3:183848917-183850116:+|1.6503878578735045|0.1967283690440462|3.07|149.0|25|2|sense L1MB4_dup1863|chr3:183848917-183850116:+|1.6503878578735045|0.1967283690440462|3.07|149.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 406.5828857421875 3 406.584797 1216.73256 0.082132 3.3393E-05 -3.7833 -0.0015382 -3.7011 -0.0015048 406.5832255964295 104.23 0.1143 107.93 107.91 108.03 3.6991 18 14 2 0 0 0 0.65891 1 24663 24663 2.4348 0.15201 1 9515900 18232 10485 11469 11475 21862 21862 0.1328657137614755 KNKLSKIHHI 10 Unmodified _KNKLSKIHHI_ 0 0 0 REV__L1MD_dup1781|chr3:136496203-136497558:+|2.355346299003304|0.0327637133845117|6.17|151.0|34|2|sense REV__L1MD_dup1781|chr3:136496203-136497558:+|2.355346299003304|0.0327637133845117|6.17|151.0|34|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 406.7348327636719 3 406.587418 1216.74043 -0.49389 -0.00020081 0.31627 0.00012859 -0.17763 -7.2221E-05 406.58753375923345 23.907 0.40412 27.637 27.554 27.958 3.7298 45 33 2 0 0 0 0.84575 1 3051 3051 1.7423 0.67081 1 55502 + 18233 27265 11470 11476 21863 21863 0.14072466687935048 KNKLSKIHHI 10 Unmodified _KNKLSKIHHI_ 0 0 0 REV__L1MD_dup1781|chr3:136496203-136497558:+|2.355346299003304|0.0327637133845117|6.17|151.0|34|2|sense REV__L1MD_dup1781|chr3:136496203-136497558:+|2.355346299003304|0.0327637133845117|6.17|151.0|34|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 406.587418 1216.74043 -1.0002 -0.00040667 0.69515 0.00028264 -0.30504 -0.00012403 406.58765502110674 23.878 0.23961 27.343 27.216 27.456 3.4655 -0.14681 0.00026129 NaN 1.7423 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 54035 + 18234 27265 11470 11476 0.14072466687935048 KNKMGLKG 8 Unmodified _KNKMGLKG_ 0 0 0 ENST00000559889.5_1_15:78449787-78454580:+|nuORF;nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A ENST00000559889.5_1_15:78449787-78454580:+|nuORF ENST00000559889.5_1_15:78449787-78454580:+|nuORF MSMS UPN48_class_I_Rep_3 7 438.2618713378906 2 438.260205 874.505857 NaN NaN NaN NaN NaN NaN NaN 43.124 1 46.765 46.265 47.265 3.6415 0 0 0 0.40625 1 7987 7987 2.3027 0 1 18235 4237 11471 11477 21864 21864 0.0635845260788983 KNKNKLKYKQK 11 Unmodified _KNKNKLKYKQK_ 0 0 0 REV__L1PBa1_dup134|chr5:66102264-66103140:+|2.7686450282259782|0.0544400243555044|5.67|151.0|19|2|sense REV__L1PBa1_dup134|chr5:66102264-66103140:+|2.7686450282259782|0.0544400243555044|5.67|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 473.9650573730469 3 473.964666 1418.87217 NaN NaN NaN NaN NaN NaN NaN 60.819 1 64.332 63.832 64.832 3.5129 0 0 0 0.38417 1 13390 13390 0.40827 0.26837 1 + 18236 30672 11472 11478 21865 21865 0.17948651985011566 KNKNKNEQYI 10 Unmodified _KNKNKNEQYI_ 0 0 0 REV__L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|154|3|sense REV__L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|154|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 639.8421020507812 2 639.843676 1277.6728 0.50832 0.00032525 -0.10548 -6.7489E-05 0.40284 0.00025776 639.8436310795774 91.7 0.79927 95.101 94.73 95.53 3.401 577 117 6 0 0 0 0.56354 1 22855 22855 1.3295 1.3295 1 13750000 + 18237 30101 11473 11479 21866 21866 0.04506971966475248 KNKNKRRSVI 10 Unmodified _KNKNKRRSVI_ 0 0 0 REV__L1M4a2_dup123|chr1:192173287-192175009:-|1.5756694827996938|0.0136886083356889|6.85|149.0|15|1|sense REV__L1M4a2_dup123|chr1:192173287-192175009:-|1.5756694827996938|0.0136886083356889|6.85|149.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 621.8931884765625 2 621.891295 1241.76804 NaN NaN NaN NaN NaN NaN NaN 97.226 1 100.83 100.33 101.33 3.6088 0 0 0 0.53105 1 23450 23450 1.1933 0.23107 1 + 18238 24500 11474 11480 21867 21867 0.1568236994817198 KNKNLLEV 8 Unmodified _KNKNLLEV_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS UPN48_class_I_Rep_1 5 478.97418212890625 2 479.290017 956.565481 0.12333 5.9111E-05 -0.027074 -1.2976E-05 0.096257 4.6135E-05 479.2899274283016 51.121 0.74498 54.646 54.317 55.062 3.5246 75 47 2 0 0 0 0.82752 1 10411 10411 5.2307 0.90143 1 369630 18239 5122 11475 11481 21868 21868 0.0854604682289164 KNKPQPRRKYL 11 Unmodified _KNKPQPRRKYL_ 0 0 0 L1MC4a_dup9401|chr18:79365041-79365619:+|1.8253531901403293|0.4088864014120399|2.16|151.0|1|1|sense L1MC4a_dup9401|chr18:79365041-79365619:+|1.8253531901403293|0.4088864014120399|2.16|151.0|1|1|sense L1MC4a_dup9401|chr18:79365041-79365619:+|1.8253531901403293|0.4088864014120399|2.16|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 476.624755859375 3 476.624643 1426.8521 NaN NaN NaN NaN NaN NaN NaN 104.95 1 108.48 107.98 108.98 3.5327 0 0 0 0.38417 1 25475 25475 0.50596 0.051438 1 18240 11633 11476 11482 21869 21869 0.1557490104507906 KNKPQPRRKYL 11 Unmodified _KNKPQPRRKYL_ 0 0 0 L1MC4a_dup9401|chr18:79365041-79365619:+|1.8253531901403293|0.4088864014120399|2.16|151.0|1|1|sense L1MC4a_dup9401|chr18:79365041-79365619:+|1.8253531901403293|0.4088864014120399|2.16|151.0|1|1|sense L1MC4a_dup9401|chr18:79365041-79365619:+|1.8253531901403293|0.4088864014120399|2.16|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 476.623779296875 3 476.624643 1426.8521 NaN NaN NaN NaN NaN NaN NaN 105.05 1 108.74 108.24 109.24 3.6901 0 0 0 0.38417 1 24856 24856 0.50596 0 1 18241 11633 11476 11482 21870 21870 0.1557490104507906 KNKPRRYV 8 Unmodified _KNKPRRYV_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.821533203125 2 530.82235 1059.63015 0.3444 0.00018282 -1.6745 -0.00088884 -1.3301 -0.00070603 530.8213308110526 73.792 0.17962 77.178 77.095 77.275 3.3861 23 17 2 0 0 0 0.82752 1 18137 18137 2.5775 0 1 178470 + 18242 28661 11477 11483 21871 21871 0.10271666419566827 KNKPRRYV 8 Unmodified _KNKPRRYV_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8220825195312 2 530.82235 1059.63015 0.39868 0.00021163 -1.4881 -0.00078991 -1.0894 -0.00057829 530.821610715683 74.274 0.31822 77.511 77.462 77.78 3.2363 38 31 2 0 0 0 0.82752 2 18387 18387;18401 2.5775 0 1 76150 + 18243 28661 11477 11483 21872;21873 21872 0.10271666419566827 KNKPRRYV 8 Unmodified _KNKPRRYV_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense MSMS UPN47_class_I_Rep_3 4 530.8126831054688 2 530.82235 1059.63015 NaN NaN NaN NaN NaN NaN NaN 74.568 1 77.814 77.314 78.314 3.2464 0 0 0 0.40604 1 18461 18461 2.5775 0 1 + 18244 28661 11477 11483 21874 21874 0.10271666419566827 KNKPRRYV 8 Unmodified _KNKPRRYV_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 530.82235 1059.63015 0.3444 0.00018282 -1.6745 -0.00088884 -1.3301 -0.00070603 530.8213308110526 73.792 0.17962 77.178 77.095 77.275 3.3861 -0.10725 -0.0002485 NaN 2.5775 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 178470 + 18245 28661 11477 11483 0.10271666419566827 KNKPRRYV 8 Unmodified _KNKPRRYV_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|18|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 530.82235 1059.63015 0.25207 0.0001338 -1.2231 -0.00064924 -0.97101 -0.00051543 530.8216745959505 73.862 0.21542 77.167 77.125 77.341 3.3048 -0.1184 0.00023071 NaN 2.5775 41 23 3 NaN NaN NaN NaN 0 NaN NaN 0 114720 + 18246 28661 11477 11483 0.10271666419566827 KNKQLSPPRVI 11 Unmodified _KNKQLSPPRVI_ 0 0 0 REV__AluJb_dup50860|chr7:102388311-102388569:+|1.0661498784360677|0.2336311449106552|2.19|151.0|4|2|sense REV__AluJb_dup50860|chr7:102388311-102388569:+|1.0661498784360677|0.2336311449106552|2.19|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 427.2642517089844 3 427.266345 1278.7772 NaN NaN NaN NaN NaN NaN NaN 54.069 1 57.387 56.887 57.887 3.3187 0 0 0 0.38417 1 12194 12194 3.3557 1.6135 1 + 18247 16952 11478 11484 21875 21875 0.14896718513841734 KNKRREMKSL 10 Unmodified _KNKRREMKSL_ 0 0 0 REV__L1ME2_dup3124|chr3:177162457-177162687:+|1.006326178034013|0.0026214920374482|8.58|151.0|1|1|sense REV__L1ME2_dup3124|chr3:177162457-177162687:+|1.006326178034013|0.0026214920374482|8.58|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 645.3063354492188 2 645.377163 1288.73977 NaN NaN NaN NaN NaN NaN NaN 61.418 1 64.585 64.085 65.085 3.1663 0 0 0 0.53105 1 14487 14487 3.2813 1.7994 1 + 18248 27856 11479 11485 21876 21876 0.10695303976581272 KNKTAFKIV 9 Unmodified _KNKTAFKIV_ 0 0 0 REV__L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|17|2|sense REV__L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 524.8275756835938 2 524.829309 1047.64407 NaN NaN NaN NaN NaN NaN NaN 94.879 1 94.879 94.379 95.379 0 0 0 0 0.39518 1 23021 23021 1.8442 0.19162 1 + 18249 26949 11480 11486 21877 21877 0.12214899127980061 KNKYRAPR 8 Unmodified _KNKYRAPR_ 0 0 0 nc|ENSG00000185176|A6NM10|AQP12B;ENSG00000184945|ENST00000337801|AQP12A;ENSG00000185176|ENST00000407834|AQP12B nc|ENSG00000185176|A6NM10|AQP12B nc|ENSG00000185176|A6NM10|AQP12B MSMS UPN47_class_I_Rep_1 2 516.8060302734375 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 78.241 1 81.67 81.17 82.17 3.4289 0 0 0 0.40625 1 19446 19446 2.3027 0 1 18250 5073 11481 11487 21878 21878 0.08431093385456734 KNLAKIRNKQ 10 Unmodified _KNLAKIRNKQ_ 0 0 0 nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENST00000465458.1_1_17:8409499-8413222:-|nuORF nc|ENSG00000133026|P35580|MYH10 nc|ENSG00000133026|P35580|MYH10 MSMS UPN48_class_I_Rep_1 5 404.92315673828125 3 404.922689 1211.74624 NaN NaN NaN NaN NaN NaN NaN 39.986 1 43.491 42.991 43.991 3.5048 0 0 0 0.53105 1 7123 7123 1.5923 0.37745 1 18251 2787 11482 11488 21879 21879 0.14883565199579607 KNLEKYKGKFV 11 Unmodified _KNLEKYKGKFV_ 0 0 0 REV__ENST00000469065.1_1_1:156130802-156132957:+|nuORF REV__ENST00000469065.1_1_1:156130802-156132957:+|nuORF MSMS UPN48_class_I_Rep_2 6 451.605712890625 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 91.979 1 95.742 95.242 96.242 3.7629 0 0 0 0.38417 1 21897 21897 1.3296 0.55311 1 + 18252 21020 11483 11489 21880 21880 0.11934182936715843 KNLFKKILAE 10 Unmodified _KNLFKKILAE_ 0 0 0 L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|64|3|sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|64|3|sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|64|3|sense MSMS UPN47_class_I_Rep_1 2 401.9209289550781 3 401.920174 1202.73869 NaN NaN NaN NaN NaN NaN NaN 109.02 1 112.63 112.13 113.13 3.6046 0 0 0 0.53105 1 26862 26862 0.62683 0 1 18253 8725 11484 11490 21881 21881 0.1454341287931129 KNLFLCIRI 9 Unmodified _KNLFLCIRI_ 0 0 0 REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF MSMS UPN48_class_I_Rep_2 6 560.3389892578125 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 106.28 1 109.96 109.46 110.46 3.6834 0 0 0 0.39518 1 25130 25130 1.8442 0 1 + 18254 22486 11485 11491 21882 21882 0.10883532147227015 KNLFRLEMDM 10 Unmodified _KNLFRLEMDM_ 0 0 0 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 MSMS UPN48_class_I_Rep_3 7 432.8851623535156 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 102.89 1 106.67 106.17 107.17 3.776 0 0 0 0.53105 1 24314 24314 0.62683 0.12087 1 18255 16696 11486 11492 21883 21883 0.0006205547374520393 KNLIAKHGL 9 Unmodified _KNLIAKHGL_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|100|3|sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|100|3|sense MSMS UPN46_class_I_Rep_3 1 497.3432922363281 2 497.313826 992.613099 NaN NaN NaN NaN NaN NaN NaN 83.105 1 83.105 82.605 83.605 0 0 0 0 0.39428 1 19720 19720 2.0598 0 1 + 18256 29204 11487 11493 21884 21884 0.1164974581373599 KNLKALPRILR 11 Unmodified _KNLKALPRILR_ 0 0 0 L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 97.484 1 100.91 100.41 101.41 3.4216 0 0 0 0.38417 1 24164 24164 0.50596 0.34663 1 18257 9932 11488 11494 21885 21885 0.22417277055819795 KNLKALPRILR 11 Unmodified _KNLKALPRILR_ 0 0 0 L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 52.166 1 55.689 55.189 56.189 3.5227 0 0 0 0.38417 1 10827 10827 0.50596 0.36606 1 18258 9932 11488 11494 21886 21886 0.22417277055819795 KNLKALPRILR 11 Unmodified _KNLKALPRILR_ 0 0 0 L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 64.386 1 67.84 67.34 68.34 3.4541 0 0 0 0.38417 1 14571 14571 0.45452 0.35968 1 18259 9932 11488 11494 21887 21887 0.22417277055819795 KNLKALPRILR 11 Unmodified _KNLKALPRILR_ 0 0 0 L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.194 1 76.675 76.175 77.175 3.4812 0 0 0 0.38417 1 17232 17232 0.50596 0.36606 1 18260 9932 11488 11494 21888 21888 0.22417277055819795 KNLKALPRILR 11 Unmodified _KNLKALPRILR_ 0 0 0 L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.269 1 65.78 65.28 66.28 3.5104 0 0 0 0.38417 1 13828 13828 0.45452 0.35968 1 18261 9932 11488 11494 21889 21889 0.22417277055819795 KNLKALPRILR 11 Unmodified _KNLKALPRILR_ 0 0 0 L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense L1MA5A_dup1275|chr6:2340083-2341353:+|3.720104108953101|0.1212538978557563|4.94|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 63.93 1 67.439 66.939 67.939 3.5083 0 0 0 0.38417 1 14333 14333 0.45452 0.31463 1 18262 9932 11488 11494 21890 21890 0.22417277055819795 KNLNKPGLFPR 11 Unmodified _KNLNKPGLFPR_ 0 0 0 REV__L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|46|3|sense REV__L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|46|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 641.8827514648438 2 642.382771 1282.75099 0.75089 0.00048236 1.9717 0.0012666 2.7226 0.0017489 642.383878600423 90.71 0.045921 90.71 90.695 90.741 0 5 4 2 0 0 0 22.551 1 21884 21884 1.1933 0.66858 1 98328 + 18263 27520 11489 11495 21891 21891 0.1209244934234448 KNLPPKKG 8 Unmodified _KNLPPKKG_ 0 0 0 L1MB7_dup12267|chrX:72401835-72402726:-|2.7381992645510995|0.0443366464335216|5.95|151.0|38|3|sense L1MB7_dup12267|chrX:72401835-72402726:-|2.7381992645510995|0.0443366464335216|5.95|151.0|38|3|sense L1MB7_dup12267|chrX:72401835-72402726:-|2.7381992645510995|0.0443366464335216|5.95|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 441.29766845703125 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 47.632 1 51.368 50.868 51.868 3.7361 0 0 0 0.40625 1 9429 9429 2.3027 0.4585 1 18264 10689 11490 11496 21892 21892 0.10438385376653514 KNLPRKRVCV 10 Unmodified _KNLPRKRVCV_ 0 0 0 REV__KIF2C|p.Q367Rfs*18|1|0.08|ENSG00000142945|chr1:44757936-44757936|C/-|frameshift_variant;REV__nc|ENSG00000068796|O00139-2|KIF2A REV__nc|ENSG00000068796|O00139-2|KIF2A MSMS UPN46_class_I_Rep_3 1 404.5835266113281 3 404.91677 1211.72848 NaN NaN NaN NaN NaN NaN NaN 57.65 1 57.65 57.15 58.15 0 0 0 0 0.53105 1 12644 12644 0.62683 0.21856 1 + 18265 19421;17782 11491 11497 21893 21893 0.13108526673090637 KNLQTVNVDEN 11 Unmodified _KNLQTVNVDEN_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENSG00000071082|ENST00000264258|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENSG00000071082|ENST00000264258|RPL31 MSMS UPN47_class_I_Rep_3 4 637.3234252929688 2 637.322773 1272.63099 NaN NaN NaN NaN NaN NaN NaN 28.817 1 32.151 31.651 32.651 3.3338 0 0 0 0.38417 1 4572 4572 3.5871 1.5011 1 18266 1083;6996 11492 11498 21894 21894 0.00558371487295517 KNLQTVNVDEN 11 Unmodified _KNLQTVNVDEN_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENSG00000071082|ENST00000264258|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENSG00000071082|ENST00000264258|RPL31 MSMS UPN47_class_I_Rep_3 4 637.3211059570312 2 637.322773 1272.63099 NaN NaN NaN NaN NaN NaN NaN 28.851 1 32.185 31.685 32.685 3.3337 0 0 0 0.38417 1 4582 4582 3.5871 1.5011 1 18267 1083;6996 11492 11498 21895 21895 0.00558371487295517 KNLRNLPD 8 Unmodified _KNLRNLPD_ 0 0 0 L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|104|3|anti-sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|104|3|anti-sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|104|3|anti-sense MSMS UPN48_class_I_Rep_3 7 485.28533935546875 2 485.277441 968.540328 NaN NaN NaN NaN NaN NaN NaN 54.005 1 57.584 57.084 58.084 3.5785 0 0 0 0.40625 1 11311 11311 2.3027 0.24298 1 18268 8624 11493 11499 21896 21896 0.054799920203208785 KNLRSHGITII 11 Unmodified _KNLRSHGITII_ 0 0 0 REV__ENST00000470910.5_1_3:39142410-39149053:-|nuORF REV__ENST00000470910.5_1_3:39142410-39149053:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 626.3798828125 2 626.380229 1250.7459 0.42773 0.00026792 -1.2324 -0.00077193 -0.80464 -0.00050401 626.3795014122187 98.875 0.42429 102.48 102.45 102.87 3.6065 77 54 2 0 0 0 0.67462 1 23910 23910 2.4985 1.169 1 585760 + 18269 18533 11494 11500 21897 21897 0.13056145479754377 KNLYFLLIQN 10 Unmodified _KNLYFLLIQN_ 0 0 0 ENST00000491706.5_1_2:66662988-66667742:+|nuORF;ENSG00000143995.20,MEIS1,chr2,+,I2.1,66435869,66436916|39|9.85|2|intron ENST00000491706.5_1_2:66662988-66667742:+|nuORF ENST00000491706.5_1_2:66662988-66667742:+|nuORF MSMS UPN46_class_I_Rep_3 1 422.5815734863281 3 422.579929 1264.71796 NaN NaN NaN NaN NaN NaN NaN 92.702 1 92.702 92.202 93.202 0 0 0 0 0.53105 1 22445 22445 1.7423 0.41263 1 18270 3339 11495 11501 21898 21898 0.09618822499669477 KNLYFLLIQN 10 Unmodified _KNLYFLLIQN_ 0 0 0 ENST00000491706.5_1_2:66662988-66667742:+|nuORF;ENSG00000143995.20,MEIS1,chr2,+,I2.1,66435869,66436916|39|9.85|2|intron ENST00000491706.5_1_2:66662988-66667742:+|nuORF ENST00000491706.5_1_2:66662988-66667742:+|nuORF MSMS UPN46_class_I_Rep_3 1 422.5819091796875 3 422.579929 1264.71796 NaN NaN NaN NaN NaN NaN NaN 93.046 1 93.046 92.546 93.546 0 0 0 0 0.53105 1 22538 22538 1.7423 0.41263 1 18271 3339 11495 11501 21899 21899 0.09618822499669477 KNNDYPKCLVD 11 Unmodified _KNNDYPKCLVD_ 0 0 0 REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|109|3|sense REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|109|3|sense MSMS UPN48_class_I_Rep_1 5 436.8790588378906 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 75.512 1 79.012 78.512 79.512 3.4996 0 0 0 0.38417 1 17893 17893 0.45452 0 1 + 18272 25565 11496 11502 21900 21900 -0.023517828964941145 KNNEWYDNLL 10 Unmodified _KNNEWYDNLL_ 0 0 0 REV__L1P2_dup68|chr1:146130564-146131950:+|2.436693700823368|0.1586829526948094|3.94|150.0|40|3|sense REV__L1P2_dup68|chr1:146130564-146131950:+|2.436693700823368|0.1586829526948094|3.94|150.0|40|3|sense MSMS UPN48_class_I_Rep_1 5 436.8788757324219 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 95.581 1 99.198 98.698 99.698 3.6167 0 0 0 0.53105 1 23023 23023 0.69767 0 1 + 18273 28858 11497 11503 21901 21901 -0.026887096787959308 KNNFLVKLY 9 Unmodified _KNNFLVKLY_ 0 0 0 REV__ENST00000513811.5_1_4:15471657-15545375:+|nuORF REV__ENST00000513811.5_1_4:15471657-15545375:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 569.8347778320312 2 569.834591 1137.65463 0.456 0.00025984 -0.3677 -0.00020953 0.088295 5.0314E-05 569.8344179926717 55.074 0.71276 58.583 58.326 59.039 3.5082 64 46 2 0 0 0 0.26948 3 11742 11703;11742;11784 15.847 0.75 1 195130 + 18274 17667 11498 11504 21902;21903;21904 21903 0.09130881782425604 KNNHQQFN 8 Unmodified _KNNHQQFN_ 0 0 0 REV__L1MB4_dup557|chr1:243293832-243294482:-|2.719106806223213|0.0395576849560716|6.1|151.0|3|1|sense REV__L1MB4_dup557|chr1:243293832-243294482:-|2.719106806223213|0.0395576849560716|6.1|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 515.3252563476562 2 515.246672 1028.47879 NaN NaN NaN NaN NaN NaN NaN 102.2 1 105.81 105.31 106.31 3.6164 0 0 0 0.40746 1 24650 24650 0.69038 0 1 + 18275 25986 11499 11505 21905 21905 -0.03430939678946743 KNNKEKKF 8 Unmodified _KNNKEKKF_ 0 0 0 REV__nc|ENSG00000077044|Q16760-2|DGKD REV__nc|ENSG00000077044|Q16760-2|DGKD MSMS UPN46_class_I_Rep_3 1 518.3085327148438 2 518.300916 1034.58728 NaN NaN NaN NaN NaN NaN NaN 62.42 1 62.42 61.92 62.92 0 0 0 0 0.4044 1 13952 13952 4.756 0.81161 1 + 18276 17873 11500 11506 21906 21906 0.07136851571453917 KNNKKKTKKIK 11 Unmodified _KNNKKKTKKIK_ 0 0 0 nc|ENSG00000282100|Q58FF6|HSP90AB4P nc|ENSG00000282100|Q58FF6|HSP90AB4P nc|ENSG00000282100|Q58FF6|HSP90AB4P MSMS UPN47_class_I_Rep_3 4 453.3055725097656 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 111.16 1 114.69 114.19 115.19 3.529 0 0 0 0.38417 1 27277 27277 0.094841 0 1 18277 16849 11501 11507 21907 21907 0.22873242364698854 KNNKKVRV 8 Unmodified _KNNKKVRV_ 0 0 0 ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|3|intron;ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|2|intron;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron ENSG00000114127.11,XRN1,chr3,-,I40.1,142329616,142332374|46|8.99|5|intron MSMS UPN47_class_I_Rep_3 4 493.7899169921875 2 493.3169 984.619247 NaN NaN NaN NaN NaN NaN NaN 69.878 1 73.082 72.582 73.582 3.2044 0 0 0 0.40746 1 17063 17063 0.69038 0.088878 1 18278 2069 11502 11508 21908 21908 0.12632264045271313 KNNKNMAF 8 Unmodified _KNNKNMAF_ 0 0 0 ENSG00000164949|ENST00000297596|GEM ENSG00000164949|ENST00000297596|GEM ENSG00000164949|ENST00000297596|GEM MULTI-MSMS UPN48_class_I_Rep_3 7 484.2630615234375 2 483.744919 965.475285 0.1469 7.106E-05 0.28685 0.00013876 0.43374 0.00020982 483.7449030350459 44.273 0.71489 47.91 47.628 48.343 3.6372 82 49 2 0 0 0 0.82752 1 8407 8407 19.439 0 1 164210 18279 4146 11503 11509 21909 21909 -0.008833257771811986 KNNLLIFF 8 Unmodified _KNNLLIFF_ 0 0 0 L1ME1_dup15083|chr8:60586953-60587558:+|1.4417579943462326|0.0514026128232975|4.81|151.0|42|3|anti-sense L1ME1_dup15083|chr8:60586953-60587558:+|1.4417579943462326|0.0514026128232975|4.81|151.0|42|3|anti-sense L1ME1_dup15083|chr8:60586953-60587558:+|1.4417579943462326|0.0514026128232975|4.81|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_1 2 504.8087463378906 2 504.797478 1007.5804 NaN NaN NaN NaN NaN NaN NaN 110.66 1 114.25 113.75 114.75 3.5835 0 0 0 0.40364 1 27283 27283 5.7604 0.52976 1 18280 12226 11504 11510 21910 21910 0.0769153869089223 KNNLQLNN 8 Unmodified _KNNLQLNN_ 0 0 0 REV__L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|37|3|sense REV__L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 478.80877685546875 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 24.448 1 28.178 27.678 28.678 3.7298 0 0 0 0.40625 1 3196 3196 2.3027 0 1 + 18281 26352 11505 11511 21911 21911 0.02395115123601954 KNNQSALLY 9 Unmodified _KNNQSALLY_ 0 0 0 ENSG00000137806|ENST00000260361|NDUFAF1 ENSG00000137806|ENST00000260361|NDUFAF1 ENSG00000137806|ENST00000260361|NDUFAF1 MULTI-MSMS UPN47_class_I_Rep_3 4 525.783447265625 2 525.782556 1049.55056 0.016378 8.6113E-06 0.118 6.2044E-05 0.13438 7.0655E-05 525.7824905547996 42.91 0.80239 46.15 45.758 46.56 3.2394 93 52 2 0 0 0 0.36392 1 8938 8938 10.074 0.6908 1 152720 18282 3041 11506 11512 21912 21912 0.027765549549030766 KNPPTKYL 8 Unmodified _KNPPTKYL_ 0 0 0 L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|89|3|sense;L1PB3_dup1307|chr6:110693887-110694834:+|1.5933057103493196|0.0086194277071224|7.53|150.0|27|3|sense;L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|33|1|sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|89|3|sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|89|3|sense MSMS UPN48_class_I_Rep_1 5 480.77886962890625 2 480.779285 959.544017 NaN NaN NaN NaN NaN NaN NaN 60.35 1 63.823 63.323 64.323 3.4737 0 0 0 0.40501 1 13341 13341 3.9444 0.66309 1 18283 15098 11507 11513 21913 21913 0.06262661794187352 KNPSKKKKRP 10 Unmodified _KNPSKKKKRP_ 0 0 0 REV__L1ME2z_dup1349|chr3:121708753-121710480:+|1.1199771577364628|0.0731087841221181|3.94|151.0|56|3|sense REV__L1ME2z_dup1349|chr3:121708753-121710480:+|1.1199771577364628|0.0731087841221181|3.94|151.0|56|3|sense MSMS UPN47_class_I_Rep_2 3 404.26348876953125 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 45.199 1 48.552 48.052 49.052 3.3534 0 0 0 0.53105 1 9501 9501 0.69767 0.1345 1 + 18284 27899 11508 11514 21914 21914 0.1704815557927759 KNPVKIDINML 11 Unmodified _KNPVKIDINML_ 0 0 0 REV__L1MEf_dup8275|chr12:1301838-1302558:+|2.383911011570582|0.0240323310861101|6.63|151.0|22|3|sense REV__L1MEf_dup8275|chr12:1301838-1302558:+|2.383911011570582|0.0240323310861101|6.63|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 642.868896484375 2 642.870848 1283.72714 NaN NaN NaN NaN NaN NaN NaN 69.516 1 73.038 72.538 73.538 3.5216 0 0 0 0.38417 1 16108 16108 2.4985 1.0166 1 + 18285 28692 11509 11515 21915 21915 0.096628477936747 KNQAHPTL 8 Unmodified _KNQAHPTL_ 0 0 0 REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|41|3|anti-sense REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_3 4 454.750732421875 2 454.751059 907.487565 NaN NaN NaN NaN NaN NaN NaN 45.974 1 49.218 48.718 49.718 3.2441 0 0 0 0.39819 1 9792 9792 8.5933 0 1 + 18286 23511 11510 11516 21916 21916 0.030120339575091748 KNQQVKKR 8 Unmodified _KNQQVKKR_ 0 0 0 L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|19|2|sense L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|19|2|sense L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 514.8206787109375 2 514.819807 1027.62506 NaN NaN NaN NaN NaN NaN NaN 41.79 1 45.541 45.041 46.041 3.7508 0 0 0 0.40625 1 7666 7666 2.3027 0 1 18287 8909 11511 11517 21917 21917 0.1123536255693125 KNQRAKITSI 10 Unmodified _KNQRAKITSI_ 0 0 0 L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|108|2|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|108|2|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|108|2|sense MSMS UPN46_class_I_Rep_3 1 579.8519897460938 2 579.851304 1157.68806 NaN NaN NaN NaN NaN NaN NaN 37.322 1 37.322 36.822 37.822 0 0 0 0 0.53105 1 7006 7006 1.3295 0 1 18288 14460 11512 11518 21918 21918 0.11551883554329834 KNQRTLIA 8 Unmodified _KNQRTLIA_ 0 0 0 REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|15|1|sense REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 472.2875671386719 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.885 1 91.504 91.004 92.004 3.6187 0 0 0 0.40625 1 21070 21070 2.3027 0 1 + 18289 30637 11513 11519 21919 21919 0.0874858239999412 KNQVVIYQK 9 Unmodified _KNQVVIYQK_ 0 0 0 REV__Kanga2_a_dup752|chr8:27338552-27338836:-|1.7135806751967504|0.0053168881611155|8.33|151.0|10|1|anti-sense REV__Kanga2_a_dup752|chr8:27338552-27338836:-|1.7135806751967504|0.0053168881611155|8.33|151.0|10|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.3278198242188 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 55.064 1 58.242 57.742 58.742 3.1779 0 0 0 0.39518 1 12553 12553 1.8442 0.36234 1 + 18290 23997 11514 11520 21920 21920 0.09021693777026485 KNRGFLGL 8 Unmodified _KNRGFLGL_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|131|3|anti-sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|131|3|anti-sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|131|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.7637939453125 2 452.771794 903.529036 NaN NaN NaN NaN NaN NaN NaN 36.172 1 36.172 35.672 36.672 0 0 0 0 0.40625 1 6675 6675 2.3027 0 1 18291 8449 11515 11521 21921 21921 0.0734121471683693 KNRKAKCF 8 Unmodified _KNRKAKCF_ 0 0 0 REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|139|2|sense REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|139|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 497.2751770019531 2 497.784379 993.554204 0.22929 0.00011414 -0.20763 -0.00010335 0.021664 1.0784E-05 497.7839603078245 69.422 0.25292 72.877 72.767 73.02 3.4548 22 17 2 0 0 0 0.72333 1 16084 16084 0.69038 0 1 49913 + 18292 30608 11516 11522 21922 21922 0.05716946247764554 KNRKAKCF 8 Unmodified _KNRKAKCF_ 0 0 0 REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|139|2|sense REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|139|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 497.784379 993.554204 0.31549 0.00015705 -0.8685 -0.00043232 -0.55301 -0.00027528 497.78372375035013 69.273 0.059814 72.786 72.761 72.821 3.5128 -0.045606 -0.00051617 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 30446 + 18293 30608 11516 11522 0.05716946247764554 KNRKDEAAN 9 Unmodified _KNRKDEAAN_ 0 0 0 REV__ENSG00000138587|ENST00000260453|MNS1 REV__ENSG00000138587|ENST00000260453|MNS1 MSMS UPN47_class_I_Rep_2 3 523.289306640625 2 523.272887 1044.53122 NaN NaN NaN NaN NaN NaN NaN 67.198 1 70.462 69.962 70.962 3.2636 0 0 0 0.32573 1 16192 16192 9.3831 0.78985 1 + 18294 19277 11517 11523 21923 21923 0.010735986639929251 KNRKKRRPL 9 Unmodified _KNRKKRRPL_ 0 0 0 REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|133|3|sense REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|133|3|sense MSMS UPN47_class_I_Rep_3 4 598.7431640625 2 598.396548 1194.77854 NaN NaN NaN NaN NaN NaN NaN 114.19 1 117.69 117.19 118.19 3.4963 0 0 0 0.4007 1 28029 28029 0.52476 0 1 + 18295 27255 11518 11524 21924 21924 0.1889439739327372 KNRRKDLQNN 10 Unmodified _KNRRKDLQNN_ 0 0 0 L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 643.2982177734375 2 643.357816 1284.70108 0.60784 0.00039106 2.8395 0.0018268 3.4474 0.0022179 643.8588208367867 57.012 0.18456 60.546 60.409 60.593 3.5333 24 18 2 0 0 0 0.84575 1 12269 12269 1.4819 0.28856 1 67740 18296 9668 11519 11525 21925 21925 0.07011714666441549 KNRRKDLQNN 10 Unmodified _KNRRKDLQNN_ 0 0 0 L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 643.357816 1284.70108 0.38359 0.00024678 2.391 0.0015383 2.7746 0.001785 643.8587702401031 57.183 0.068996 60.351 60.302 60.371 3.1681 -0.13555 -0.00067273 NaN 1.4819 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 67980 18297 9668 11519 11525 0.07011714666441549 KNRRKDLQNN 10 Unmodified _KNRRKDLQNN_ 0 0 0 L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 643.357816 1284.70108 0.55716 0.00035845 3.4779 0.0022375 4.0351 0.002596 643.362455824982 57.021 0.085102 60.564 60.532 60.618 3.5427 0.076816 0.00072585 NaN 1.4819 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 60552 18298 9668 11519 11525 0.07011714666441549 KNRTRQTY 8 Unmodified _KNRTRQTY_ 0 0 0 L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|8|1|sense L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|8|1|sense L1MB7_dup5122|chr3:195435466-195436133:-|2.9621575776931537|0.0113793696372541|8.02|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 533.7930297851562 2 533.791247 1065.56794 NaN NaN NaN NaN NaN NaN NaN 41.196 1 41.196 40.696 41.696 0 0 0 0 0.19991 1 8054 8054 46.021 4.1813 1 18299 10848 11520 11526 21926 21926 0.037778952805638255 KNRYERRRVRP 11 Unmodified _KNRYERRRVRP_ 0 0 0 REV__LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense REV__LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 510.6340637207031 3 510.634313 1528.88111 NaN NaN NaN NaN NaN NaN NaN 95.134 1 98.543 98.043 99.043 3.4095 0 0 0 0.38417 1 23657 23657 0.094841 0 1 + 18300 30830 11521 11527 21927 21927 0.13782438394036944 KNRYERRRVRP 11 Unmodified _KNRYERRRVRP_ 0 0 0 REV__LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense REV__LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.6343688964844 3 510.634313 1528.88111 0.22843 0.00011664 0.057579 2.9402E-05 0.286 0.00014604 510.6341556483084 97.13 0.65431 100.74 100.29 100.95 3.6088 196 78 4 0 0 0 0.68081 1 23467 23467 0.45452 0 1 478670 + 18301 30830 11521 11527 21928 21928 0.13782438394036944 KNRYERRRVRP 11 Unmodified _KNRYERRRVRP_ 0 0 0 REV__LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense REV__LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.9690246582031 3 510.634313 1528.88111 0.28783 0.00014698 -0.059633 -3.0451E-05 0.2282 0.00011652 510.63407466059454 97.241 1.2279 101.15 100.39 101.61 3.9084 362 166 3 0 0 0 0.68478 1 23149 23149 0.094841 0 1 543670 + 18302 30830 11521 11527 21929 21929 0.13782438394036944 KNSETNPYIY 10 Unmodified _KNSETNPYIY_ 0 0 0 L1MA3_dup3328|chr6:34844575-34845333:-|1.4785836097240777|0.0559227730802118|4.72|151.0|13|2|sense L1MA3_dup3328|chr6:34844575-34845333:-|1.4785836097240777|0.0559227730802118|4.72|151.0|13|2|sense L1MA3_dup3328|chr6:34844575-34845333:-|1.4785836097240777|0.0559227730802118|4.72|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 614.796142578125 2 614.79586 1227.57717 0.19169 0.00011785 0.094399 5.8036E-05 0.28609 0.00017589 614.795937075232 46.957 0.77948 50.652 50.338 51.118 3.6951 142 58 4 0 0 0 0.49738 1 10055 10055 9.3831 0 1 427940 18303 9528 11522 11528 21930 21930 -0.027518009444293057 KNSFTKTYI 9 Unmodified _KNSFTKTYI_ 0 0 0 REV__MER4B-int_dup842|chrX:131693218-131695227:-|1.5862974358453727|0.0727136878688673|4.45|151.0|20|1|sense REV__MER4B-int_dup842|chrX:131693218-131695227:-|1.5862974358453727|0.0727136878688673|4.45|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 551.3009643554688 2 551.300581 1100.58661 0.38878 0.00021434 -0.12724 -7.0146E-05 0.26155 0.00014419 551.3006145098575 65.42 0.5928 68.776 68.45 69.043 3.3557 55 32 2 0 0 0 0.43982 1 15573 15573 5.7319 0.50118 1 100220 + 18304 31358 11523 11529 21931 21931 0.04034012131751297 KNSKRTRMRS 10 Unmodified _KNSKRTRMRS_ 0 0 0 Tigger1_dup10103|chr14:68029301-68031056:-|1.177956139830712|0.0175687625160618|6.07|149.0|39|2|sense Tigger1_dup10103|chr14:68029301-68031056:-|1.177956139830712|0.0175687625160618|6.07|149.0|39|2|sense Tigger1_dup10103|chr14:68029301-68031056:-|1.177956139830712|0.0175687625160618|6.07|149.0|39|2|sense MSMS UPN48_class_I_Rep_1 5 632.3576049804688 2 632.356762 1262.69897 NaN NaN NaN NaN NaN NaN NaN 71.251 1 74.717 74.217 75.217 3.466 0 0 0 0.53105 1 16646 16646 1.4819 0 1 18305 32972 11524 11530 21932 21932 0.0781296265695346 KNSLVIQR 8 Unmodified _KNSLVIQR_ 0 0 0 L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|18|1|sense L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|18|1|sense L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|18|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 479.2955322265625 2 479.295633 956.576714 0.11211 5.3734E-05 0.04867 2.3327E-05 0.16078 7.7061E-05 479.2954322668536 93.767 0.56246 97.388 97.273 97.835 3.6208 95 65 2 0 0 0 0.72333 1 22563 22563 2.3027 1.6124 1 290620 18306 9631 11525 11531 21933 21933 0.0966886891702643 KNSSVGPLY 9 Unmodified _KNSSVGPLY_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP UPN47_class_I_Rep_2 3 482.29736328125 2 482.758549 963.502546 -0.15818 -7.6361E-05 0.22539 0.00010881 0.067213 3.2447E-05 482.75854053811145 42.278 0.71781 45.639 45.42 46.138 3.3611 66 53 2 0 0 0 0.11884 1 8643 8643 9.3831 1.473 1 79919 18307 4908 11526 11532 21934 21934 0.019334810348595965 KNSWLSQGFF 10 Unmodified _KNSWLSQGFF_ 0 0 0 ENST00000528443.6_1_1:179888013-179888181:+|nuORF ENST00000528443.6_1_1:179888013-179888181:+|nuORF ENST00000528443.6_1_1:179888013-179888181:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 607.303466796875 2 607.303655 1212.59276 0.51828 0.00031475 -0.1628 -9.8868E-05 0.35548 0.00021588 607.3033311840616 57.161 0.75541 60.655 60.374 61.129 3.4942 106 65 2 0 0 0 0.54822 1 12303 12303 5.7319 0 1 247020 18308 7278 11527 11533 21935 21935 -0.005034696367374636 KNTEKPMNY 9 Unmodified _KNTEKPMNY_ 0 0 0 REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|37|3|sense REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|37|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 563.31884765625 2 562.773874 1123.53319 0.34845 0.0001961 0.17646 9.9307E-05 0.52491 0.0002954 562.77342329733 55.423 0.1859 58.902 58.825 59.011 3.4785 11 10 2 0 0 0 0.11021 1 12595 12595 14.838 3.198 1 43672 + 18309 24812 11528 11534 21936 21936 -0.023631086424074965 KNVENPLIGPQ 11 Unmodified _KNVENPLIGPQ_ 0 0 0 ENST00000510175.5_1_4:155055-155787:+|nuORF ENST00000510175.5_1_4:155055-155787:+|nuORF ENST00000510175.5_1_4:155055-155787:+|nuORF MSMS UPN48_class_I_Rep_3 7 604.8359985351562 2 604.83532 1207.65609 NaN NaN NaN NaN NaN NaN NaN 43.502 1 47.141 46.641 47.641 3.6385 0 0 0 0.38417 1 8102 8102 4.5289 0.19963 1 18310 7177 11529 11535 21937 21937 0.06056471080546544 KNVLAITLCLY 11 Unmodified _KNVLAITLCLY_ 0 0 0 L1MC5a_dup4494|chr4:109504879-109506096:+|2.5793556744154595|0.3073312091114008|3.07|151.0|99|3|anti-sense L1MC5a_dup4494|chr4:109504879-109506096:+|2.5793556744154595|0.3073312091114008|3.07|151.0|99|3|anti-sense L1MC5a_dup4494|chr4:109504879-109506096:+|2.5793556744154595|0.3073312091114008|3.07|151.0|99|3|anti-sense MSMS UPN47_class_I_Rep_1 2 625.8646850585938 2 625.862492 1249.71043 NaN NaN NaN NaN NaN NaN NaN 108.85 1 112.48 111.98 112.98 3.6355 0 0 0 0.35398 1 26799 26799 8.7454 3.0136 1 18311 11748 11530 11536 21938 21938 0.09556346907720581 KNVLKCEWWC 10 Unmodified _KNVLKCEWWC_ 0 0 0 REV__L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|39|2|sense REV__L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|39|2|sense MSMS UPN47_class_I_Rep_1 2 436.8800048828125 3 436.879104 1307.61548 NaN NaN NaN NaN NaN NaN NaN 74.446 1 77.84 77.34 78.34 3.3937 0 0 0 0.53105 1 18323 18323 0.62683 0.12087 1 + 18312 25334 11531 11537 21939 21939 -0.02601909835107108 KNVRHFRKPFY 11 Unmodified _KNVRHFRKPFY_ 0 0 0 REV__L1MEd_dup18065|chr15:22856561-22856870:+|1.0010041562544485|0.2174392143802141|2.2|151.0|2|1|sense REV__L1MEd_dup18065|chr15:22856561-22856870:+|1.0010041562544485|0.2174392143802141|2.2|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 497.9505920410156 3 497.949239 1490.82589 NaN NaN NaN NaN NaN NaN NaN 20.087 1 23.484 22.984 23.984 3.3963 0 0 0 0.38417 1 2020 2020 0.50596 0.09769 1 + 18313 28551 11532 11538 21940 21940 0.10010631873592502 KNVRPERTR 9 Unmodified _KNVRPERTR_ 0 0 0 REV__L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|2|1|sense REV__L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 578.337158203125 2 578.338895 1154.66324 NaN NaN NaN NaN NaN NaN NaN 62.605 1 62.605 62.105 63.105 0 0 0 0 0.39518 1 14005 14005 1.8442 0.36234 1 + 18314 29018 11533 11539 21941 21941 0.09209248471597675 KNVRVWKG 8 Unmodified _KNVRVWKG_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 493.7979736328125 2 493.798343 985.582134 -0.50321 -0.00024849 -0.53945 -0.00026638 -1.0427 -0.00051487 493.7980996527671 24.246 0.49201 27.597 27.446 27.938 3.3509 52 39 2 0 0 0 0.82752 1 3189 3189 2.3027 0.4585 1 64224 + 18315 19771 11534 11540 21942 21942 0.08876592499518665 KNVYSPLVG 9 Unmodified _KNVYSPLVG_ 0 0 0 L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|55|2|anti-sense L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|55|2|anti-sense L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|55|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 489.2790222167969 2 488.776742 975.538931 0.1272 6.2171E-05 -0.24503 -0.00011977 -0.11784 -5.7596E-05 488.7765120948708 71.361 0.6032 74.736 74.547 75.15 3.3751 70 48 2 0 0 0 0.12157 1 17481 17481 6.2058 6.2058 1 115350 18316 9989 11535 11541 21943 21943 0.05018357931567152 KNWFHWNKH 9 Unmodified _KNWFHWNKH_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense MSMS UPN47_class_I_Rep_1 2 432.8850402832031 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 100.6 1 104.4 103.9 104.9 3.7942 0 0 0 0.4007 1 24862 24862 0.23584 0.076522 1 18317 9556 11536 11542 21944 21944 -0.004781192115387967 KNWFHWNKH 9 Unmodified _KNWFHWNKH_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense MSMS UPN47_class_I_Rep_2 3 432.8851318359375 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 100.78 1 104.29 103.79 104.79 3.5063 0 0 0 0.4007 1 24627 24627 0.23584 0 1 18318 9556 11536 11542 21945 21945 -0.004781192115387967 KNWFHWNKH 9 Unmodified _KNWFHWNKH_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense MSMS UPN47_class_I_Rep_3 4 432.88507080078125 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 100.6 1 104.07 103.57 104.57 3.4671 0 0 0 0.4007 1 24844 24844 0.23584 0.076522 1 18319 9556 11536 11542 21946 21946 -0.004781192115387967 KNWFHWNKH 9 Unmodified _KNWFHWNKH_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense MSMS UPN47_class_I_Rep_3 4 432.8851013183594 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 100.72 1 104.19 103.69 104.69 3.4671 0 0 0 0.4007 1 24868 24868 0.23584 0 1 18320 9556 11536 11542 21947 21947 -0.004781192115387967 KNWFHWNKH 9 Unmodified _KNWFHWNKH_ 0 0 0 L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|91|2|sense MSMS UPN47_class_I_Rep_3 4 432.8852233886719 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 100.87 1 104.34 103.84 104.84 3.4671 0 0 0 0.4007 1 24897 24897 0.23584 0.076522 1 18321 9556 11536 11542 21948 21948 -0.004781192115387967 KNWRQRILR 9 Unmodified _KNWRQRILR_ 0 0 0 ENST00000377340.6_1_20:20022223-20022997:-|nuORF ENST00000377340.6_1_20:20022223-20022997:-|nuORF ENST00000377340.6_1_20:20022223-20022997:-|nuORF MSMS UPN47_class_I_Rep_2 3 635.3856811523438 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 93.895 1 97.365 96.865 97.865 3.4708 0 0 0 0.4007 1 23160 23160 0.52476 0 1 18322 6456 11537 11543 21949 21949 0.1341780701359312 KNYILKIGITF 11 Unmodified _KNYILKIGITF_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|249|1|anti-sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|249|1|anti-sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|249|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 437.2674560546875 3 437.267463 1308.78056 -0.097418 -4.2598E-05 0.77726 0.00033987 0.67984 0.00029727 437.26752339697225 50.659 1.183 54.288 53.59 54.773 3.6285 99 57 3 0 0 0 0.68132 1 11054 11054 0.40827 0 1 111800 18323 15330 11538 11544 21950 21950 0.13851968567837503 KNYKKYIF 8 Unmodified _KNYKKYIF_ 0 0 0 REV__L1MB5_dup1349|chr3:136707963-136708638:+|1.849406887595943|0.0227268902975027|6.35|151.0|25|3|sense REV__L1MB5_dup1349|chr3:136707963-136708638:+|1.849406887595943|0.0227268902975027|6.35|151.0|25|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 552.3150634765625 2 552.316035 1102.61752 0.36126 0.00019953 -2.8954 -0.0015992 -2.5341 -0.0013996 552.815159433984 69.83 0.12961 69.83 69.773 69.903 0 16 12 3 0 0 0 0.82752 1 16029 16029 4.756 0 1 120820 + 18324 26032 11539 11545 21951 21951 0.07031210236641527 KNYYLYNSFP 10 Unmodified _KNYYLYNSFP_ 0 0 0 REV__LTR101_Mam_dup531|chr8:55972268-55972499:-|2.038846360791894|0.0241789725987762|6.4|151.0|7|3|sense REV__LTR101_Mam_dup531|chr8:55972268-55972499:-|2.038846360791894|0.0241789725987762|6.4|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 436.9412536621094 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 61.13 1 64.603 64.103 65.103 3.4737 0 0 0 0.53105 1 13576 13576 0.69767 0 1 + 18325 30774 11540 11546 21952 21952 -0.02286620185122956 KPACLLFAS 9 Unmodified _KPACLLFAS_ 0 0 0 REV__ENSG00000182185.18,RAD51B,chr14,+,I21.1,68468600,68470522|23|5.49|1|intron REV__ENSG00000182185.18,RAD51B,chr14,+,I21.1,68468600,68470522|23|5.49|1|intron MSMS UPN47_class_I_Rep_2 3 475.2601623535156 2 475.262413 948.510274 NaN NaN NaN NaN NaN NaN NaN 42.048 1 45.409 44.909 45.909 3.3611 0 0 0 0.38639 1 8535 8535 3.9444 0.3479 1 + 18326 20750 11541 11547 21953 21953 0.033959170307753084 KPAHRRPH 8 Unmodified _KPAHRRPH_ 0 0 0 L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|44|2|sense L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|44|2|sense L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|44|2|sense MSMS UPN47_class_I_Rep_2 3 499.8032531738281 2 499.791384 997.568215 NaN NaN NaN NaN NaN NaN NaN 15.628 1 19.014 18.514 19.514 3.3864 0 0 0 0.40746 1 859 859 0.69038 0 1 18327 10112 11542 11548 21954 21954 0.06933359791071325 KPAIPATR 8 Unmodified _KPAIPATR_ 0 0 0 AluJo_dup49650|chr12:27034465-27034737:-|1.0402304984347652|0.2819461592897957|1.88|151.0|2|1|sense AluJo_dup49650|chr12:27034465-27034737:-|1.0402304984347652|0.2819461592897957|1.88|151.0|2|1|sense AluJo_dup49650|chr12:27034465-27034737:-|1.0402304984347652|0.2819461592897957|1.88|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 427.2671203613281 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 107.53 1 111.21 110.71 111.71 3.6813 0 0 0 0.40501 1 25360 25360 3.9444 1.6417 1 18328 113 11543 11549 21955 21955 0.08597812342554789 KPAKPAPSVS 10 Unmodified _KPAKPAPSVS_ 0 0 0 ENSG00000198824|ENST00000361283|CHAMP1 ENSG00000198824|ENST00000361283|CHAMP1 ENSG00000198824|ENST00000361283|CHAMP1 MSMS UPN48_class_I_Rep_3 7 491.2722473144531 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 53.953 1 57.536 57.036 58.036 3.5836 0 0 0 0.53105 1 11295 11295 9.3831 2.66 1 18329 5467 11544 11550 21956 21956 0.07442046822893644 KPAQLPPNL 9 Unmodified _KPAQLPPNL_ 0 0 0 L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.2926025390625 2 489.292559 976.570566 -0.29528 -0.00014448 0.19921 9.7472E-05 -0.096075 -4.7009E-05 489.2926057221428 31.569 0.72939 35.298 34.944 35.673 3.7293 93 53 2 0 0 0 0.46869 1 5280 5280 3.9444 0.3479 1 116010 18330 13924 11545 11551 21957 21957 0.08134350685497793 KPAQLPPNL 9 Unmodified _KPAQLPPNL_ 0 0 0 L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 489.2925720214844 2 489.292559 976.570566 -0.12173 -5.9561E-05 -0.026747 -1.3087E-05 -0.14848 -7.2648E-05 489.2924612443472 31.853 0.72416 35.323 34.892 35.616 3.4691 92 56 2 0 0 0 0.46869 1 5401 5401 3.9444 0.3479 1 128420 18331 13924 11545 11551 21958 21958 0.08134350685497793 KPAQLPPNL 9 Unmodified _KPAQLPPNL_ 0 0 0 L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 489.2937927246094 2 489.292559 976.570566 -0.41342 -0.00020228 0.19905 9.7395E-05 -0.21437 -0.00010489 489.2925546872438 32.005 0.69214 35.304 35.079 35.771 3.2991 97 52 2 0 0 0 0.46869 1 5637 5637 3.9444 0.3479 1 112200 18332 13924 11545 11551 21959 21959 0.08134350685497793 KPCISACDEMC 11 Unmodified _KPCISACDEMC_ 0 0 0 L1M5_dup11328|chr3:141597643-141598802:+|2.0130296882978587|0.1102384904856047|4.19|151.0|4|1|sense L1M5_dup11328|chr3:141597643-141598802:+|2.0130296882978587|0.1102384904856047|4.19|151.0|4|1|sense L1M5_dup11328|chr3:141597643-141598802:+|2.0130296882978587|0.1102384904856047|4.19|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 600.2295532226562 2 600.231812 1198.44907 NaN NaN NaN NaN NaN NaN NaN 117.27 1 120.71 120.21 121.21 3.4425 0 0 0 0.38417 1 28884 28884 1.1933 1.1933 1 18333 9090 11546 11552 21960 21960 -0.14221467117499742 KPDRGRPR 8 Unmodified _KPDRGRPR_ 0 0 0 REV__ENST00000481260.1_1_9:134504569-134518759:-|nuORF REV__ENST00000481260.1_1_9:134504569-134518759:-|nuORF MSMS UPN46_class_I_Rep_3 1 491.28948974609375 2 491.288674 980.562795 NaN NaN NaN NaN NaN NaN NaN 59.213 1 59.213 58.713 59.713 0 0 0 0 0.40643 1 13077 13077 2.0598 0 1 + 18334 22565 11547 11553 21961 21961 0.07173636208608514 KPDTKCCIHV 10 Unmodified _KPDTKCCIHV_ 0 0 0 L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|13|1|sense L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|13|1|sense L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 572.2860717773438 2 572.286094 1142.55763 0.048412 2.7706E-05 -0.65004 -0.00037201 -0.60163 -0.0003443 572.2858432792679 13.973 0.11264 17.36 17.3 17.412 3.3871 17 11 2 0 0 0 0.56374 1 458 458 1.1933 0 1 20995 18335 10626 11548 11554 21962 21962 -0.007941717605717713 KPDTKCCIHV 10 Unmodified _KPDTKCCIHV_ 0 0 0 L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|13|1|sense L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|13|1|sense L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|13|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 572.286094 1142.55763 0.048412 2.7706E-05 -0.65004 -0.00037201 -0.60163 -0.0003443 572.2858432792679 13.973 0.11264 17.36 17.3 17.412 3.3871 0.0046832 -0.00018925 NaN 1.1933 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 20995 18336 10626 11548 11554 -0.007941717605717713 KPEDTLNLCQ 10 Unmodified _KPEDTLNLCQ_ 0 0 0 ENSG00000153086|ENST00000356140|ACMSD;nc|ENSG00000153086|Q8TDX5-2|ACMSD ENSG00000153086|ENST00000356140|ACMSD ENSG00000153086|ENST00000356140|ACMSD MSMS UPN48_class_I_Rep_2 6 580.7858276367188 2 580.784438 1159.55432 NaN NaN NaN NaN NaN NaN NaN 47.861 1 51.597 51.097 52.097 3.7361 0 0 0 0.53105 1 9500 9500 2.7352 0.23671 1 18337 3637 11549 11555 21963 21963 -0.019071433335511756 KPEMHIKSNN 10 Unmodified _KPEMHIKSNN_ 0 0 0 REV__L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|81|2|sense REV__L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|81|2|sense MSMS UPN46_class_I_Rep_3 1 599.3079223632812 2 599.305872 1196.59719 NaN NaN NaN NaN NaN NaN NaN 51.66 1 51.66 51.16 52.16 0 0 0 0 0.53105 1 10997 10997 1.1933 0 1 + 18338 30314 11550 11556 21964 21964 0.006756715145684211 KPEQSEGNSY 10 Unmodified _KPEQSEGNSY_ 0 0 0 REV__ENST00000413987.1_1_1:28837183-28837234:+|nuORF REV__ENST00000413987.1_1_1:28837183-28837234:+|nuORF MSMS UPN48_class_I_Rep_3 7 569.7564086914062 2 569.754192 1137.49383 NaN NaN NaN NaN NaN NaN NaN 26.695 1 30.461 29.961 30.961 3.7663 0 0 0 0.53105 1 3413 3413 2.9952 0.69251 1 + 18339 22205 11551 11557 21965 21965 -0.06941537392253849 KPFFFYPI 8 Unmodified _KPFFFYPI_ 0 0 0 REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF MSMS UPN48_class_I_Rep_3 7 529.3001098632812 2 529.789121 1057.56369 NaN NaN NaN NaN NaN NaN NaN 27.278 1 31.034 30.534 31.534 3.7555 0 0 0 0.40604 1 3561 3561 2.5775 0 1 + 18340 19233 11552 11558 21966 21966 0.03721037804939442 KPFLVHCL 8 Unmodified _KPFLVHCL_ 0 0 0 REV__Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|20|3|sense REV__Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|20|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.97479248046875 2 478.772948 955.531344 0.13485 6.4561E-05 0.1516 7.2584E-05 0.28645 0.00013714 478.77303791207316 42.499 0.38254 46.14 45.891 46.274 3.6415 35 29 2 0 0 0 0.72333 1 7808 7808 5.7604 0 1 75310 + 18341 32793 11553 11559 21967 21967 0.05179927130291162 KPFVLLYF 8 Unmodified _KPFVLLYF_ 0 0 0 REV__HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|63|1|anti-sense REV__HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_1 2 513.8072509765625 2 513.804771 1025.59499 NaN NaN NaN NaN NaN NaN NaN 62.285 1 65.653 65.153 66.153 3.3681 0 0 0 0.40581 1 14663 14663 2.8892 0 1 + 18342 23487 11554 11560 21968 21968 0.0832161083903884 KPGAPLIH 8 Unmodified _KPGAPLIH_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|159|3|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|159|3|sense MSMS UPN48_class_I_Rep_1 5 416.7562561035156 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.3 1 112.93 112.43 113.43 3.6321 0 0 0 0.40404 1 26534 26534 5.2307 0 1 + 18343 25364 11555 11561 21969 21969 0.07418427313859866 KPGGHYRR 8 Unmodified _KPGGHYRR_ 0 0 0 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 MSMS UPN47_class_I_Rep_1 2 485.7718811035156 2 485.770117 969.525681 NaN NaN NaN NaN NaN NaN NaN 28.504 1 32.27 31.77 32.77 3.7662 0 0 0 0.40625 1 4399 4399 2.3027 1.5091 1 18344 5037 11556 11562 21970 21970 0.039699646628378105 KPGGTRKT 8 Unmodified _KPGGTRKT_ 0 0 0 L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|39|1|sense L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|39|1|sense L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|39|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 422.2523498535156 2 422.753601 843.49265 0.10562 4.465E-05 -1.6748 -0.00070805 -1.5692 -0.0006634 422.7525196226649 108.17 0.026024 108.17 108.15 108.18 0 4 2 2 0 0 0 0.72333 1 26430 26430 4.756 0 1 1959600 18345 14127 11557 11563 21971 21971 0.06464337820136734 KPGILARLK 9 Unmodified _KPGILARLK_ 0 0 0 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 MULTI-MSMS UPN48_class_I_Rep_1 5 498.34002685546875 2 498.339844 994.665135 0.18325 9.1318E-05 0.37847 0.00018861 0.56172 0.00027993 498.33993402579875 108.33 0.57871 111.96 111.57 112.15 3.6313 97 50 5 0 0 0 0.48846 1 26230 26230 1.8442 0 1 9216600 18346 4759 11558 11564 21972 21972 0.16758909227507957 KPGKFQRT 8 Unmodified _KPGKFQRT_ 0 0 0 ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|4|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|5|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|2|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|1|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|6|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|7|intron;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|4|intron ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|4|intron MSMS UPN46_class_I_Rep_3 1 481.2833557128906 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 97.884 1 97.884 97.384 98.384 0 0 0 0 0.40746 1 23828 23828 0.69038 0 1 18347 775 11559 11565 21973 21973 0.06864599745563282 KPGMLAFRR 9 Unmodified _KPGMLAFRR_ 0 0 0 ENST00000375163.5_1_9:100372568-100388015:-|nuORF ENST00000375163.5_1_9:100372568-100388015:-|nuORF ENST00000375163.5_1_9:100372568-100388015:-|nuORF MSMS UPN46_class_I_Rep_3 1 538.3151245117188 2 538.313303 1074.61205 NaN NaN NaN NaN NaN NaN NaN 109.52 1 109.52 109.02 110.02 0 0 0 0 0.38639 1 26906 26906 3.9444 0 1 18348 6440 11560 11566 21974 21974 0.0777320817319378 KPGPPQLQL 9 Unmodified _KPGPPQLQL_ 0 0 0 REV__AluJo_dup1157|chr1:23973340-23973616:-|1.1471181773868926|0.3534816615246843|1.7|151.0|19|3|anti-sense REV__AluJo_dup1157|chr1:23973340-23973616:-|1.1471181773868926|0.3534816615246843|1.7|151.0|19|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 489.2925109863281 2 489.292559 976.570566 -0.41342 -0.00020228 0.19905 9.7395E-05 -0.21437 -0.00010489 489.2925546872438 32.005 0.69214 35.304 35.079 35.771 3.2991 97 52 2 0 0 0 0.46869 1 5513 5513 3.9444 0 1 112200 + 18349 16980 11561 11567 21975 21975 0.0813435068552053 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.2509460449219 2 435.251226 868.487899 0.10851 4.7229E-05 -0.46453 -0.00020219 -0.35602 -0.00015496 435.25095179379576 72.973 0.4216 72.973 72.686 73.107 0 80 42 2 0 0 0 0.46869 1 16930 16930 3.9444 0.66309 1 224000 18350 7089 11562 11568 21976 21976 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.2509460449219 2 435.251226 868.487899 0.11371 4.949E-05 -0.48846 -0.0002126 -0.37475 -0.00016311 435.25101380459455 74.65 0.24226 74.65 74.462 74.704 0 46 28 2 0 0 0 0.48846 1 17309 17309 1.8442 1.0506 1 120540 18351 7089 11562 11568 21977 21977 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MSMS UPN46_class_I_Rep_3 1 435.2504577636719 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 74.223 1 74.223 73.723 74.723 0 0 0 0 0.38639 1 17217 17217 3.9444 1.3669 1 18352 7089 11562 11568 21978 21978 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MSMS UPN46_class_I_Rep_3 1 435.250732421875 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 74.372 1 74.372 73.872 74.872 0 0 0 0 0.39518 1 17255 17255 1.8442 1.0506 1 18353 7089 11562 11568 21979 21979 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.25091552734375 2 435.251226 868.487899 0.0067095 2.9203E-06 -0.46838 -0.00020386 -0.46167 -0.00020094 435.2509396843038 70.976 0.69771 74.35 74.048 74.746 3.3741 100 62 2 0 0 0 0.46869 2 17263 17263;17348 3.9444 1.6417 1 369910 18354 7089 11562 11568 21980;21981 21980 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.25091552734375 2 435.251226 868.487899 0.010806 4.7035E-06 -0.51076 -0.00022231 -0.49996 -0.00021761 435.25089279725137 71.439 1.1492 74.814 74.672 75.821 3.3751 114 88 2 0 0 0 0.48846 1 17555 17555 1.8442 0.36234 1 215990 18355 7089 11562 11568 21982 21982 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.2507629394531 2 435.251226 868.487899 -0.40726 -0.00017726 -0.046376 -2.0185E-05 -0.45364 -0.00019745 435.2510943024816 68.251 0.67493 71.449 71.099 71.774 3.1977 65 46 2 0 0 0 0.48846 1 16611 16611 1.8442 1.1539 1 82787 18356 7089 11562 11568 21983 21983 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.25103759765625 2 435.251226 868.487899 -0.01274 -5.5453E-06 -0.48251 -0.00021001 -0.49525 -0.00021556 435.2509537952896 71.723 1.0498 75.189 74.866 75.916 3.466 124 95 2 0 0 0 0.46869 2 16760 16720;16760 3.9444 1.0506 1 162610 18357 7089 11562 11568 21984;21985 21985 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MSMS UPN48_class_I_Rep_2 6 435.25091552734375 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 71.383 1 74.934 74.434 75.434 3.5505 0 0 0 0.38639 1 16652 16652 3.9444 1.3669 1 18358 7089 11562 11568 21986 21986 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.2510681152344 2 435.251226 868.487899 0.19321 8.4094E-05 -0.56464 -0.00024576 -0.37143 -0.00016166 435.2508775974768 71.384 0.4109 74.902 74.759 75.17 3.5185 66 34 2 0 0 0 0.46869 1 16591 16591 3.9444 1.6417 1 121740 18359 7089 11562 11568 21987 21987 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 435.251226 868.487899 0.11371 4.949E-05 -0.48846 -0.0002126 -0.37475 -0.00016311 435.25101380459455 74.65 0.24226 74.65 74.462 74.704 0 -0.1387 3.2585E-05 NaN 3.9444 46 28 2 NaN NaN NaN NaN 0 NaN NaN 0 120540 18360 7089 11562 11568 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 435.251226 868.487899 0.10451 4.5487E-05 -1.0453 -0.00045495 -0.94075 -0.00040946 435.2508867258641 71.5 0.23325 71.5 71.415 71.648 0 0.0777 -0.0005447 NaN 1.8442 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 75073 18361 7089 11562 11568 0.04839453677357142 KPGQAARAA 9 Unmodified _KPGQAARAA_ 0 0 0 ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF ENST00000494911.5_1_11:32457087-32459470:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 435.251226 868.487899 -0.011424 -4.9724E-06 -0.6377 -0.00027756 -0.64913 -0.00028253 435.25083879887944 67.953 0.80317 71.317 70.91 71.713 3.3646 -0.10445 -0.00018993 NaN 1.8442 87 60 2 NaN NaN NaN NaN 0 NaN NaN 0 81444 18362 7089 11562 11568 0.04839453677357142 KPGQGLIME 9 Unmodified _KPGQGLIME_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MSMS UPN48_class_I_Rep_1 5 486.7646179199219 2 486.762778 971.511002 NaN NaN NaN NaN NaN NaN NaN 27.607 1 31.17 30.67 31.67 3.5629 0 0 0 0.36505 1 3581 3581 7.2892 2.0586 1 18363 5733 11563 11569 21988 21988 0.024107116798290917 KPGQQKRRQR 10 Unmodified _KPGQQKRRQR_ 0 0 0 REV__ENSG00000129347|ENST00000312962|KRI1 REV__ENSG00000129347|ENST00000312962|KRI1 MSMS UPN48_class_I_Rep_2 6 641.38525390625 2 641.384168 1280.75378 NaN NaN NaN NaN NaN NaN NaN 94.076 1 97.852 97.352 98.352 3.7761 0 0 0 0.53105 1 22372 22372 1.4819 0.41044 1 + 18364 18921 11564 11570 21989 21989 0.12463717519858619 KPGQQKRRQR 10 Unmodified _KPGQQKRRQR_ 0 0 0 REV__ENSG00000129347|ENST00000312962|KRI1 REV__ENSG00000129347|ENST00000312962|KRI1 MSMS UPN48_class_I_Rep_2 6 641.3869018554688 2 641.384168 1280.75378 NaN NaN NaN NaN NaN NaN NaN 94.092 1 97.868 97.368 98.368 3.7761 0 0 0 0.53105 1 22376 22376 1.4819 0.15237 1 + 18365 18921 11564 11570 21990 21990 0.12463717519858619 KPGRGRRAR 9 Unmodified _KPGRGRRAR_ 0 0 0 REV__ENST00000409843.5_1_2:189156545-189156761:+|nuORF REV__ENST00000409843.5_1_2:189156545-189156761:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 527.3298950195312 2 527.328665 1052.64278 0.33325 0.00017573 0.51193 0.00026996 0.84518 0.00044569 527.3289453725965 107.99 0.31145 107.99 107.93 108.24 0 38 22 2 0 0 0 0.35081 1 26353 26353 10.824 0.75 1 37528000 + 18366 22186 11565 11571 21991 21991 0.11856122602443975 KPGRIGVF 8 Unmodified _KPGRIGVF_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MSMS UPN47_class_I_Rep_1 2 437.2677001953125 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 51.262 1 54.855 54.355 55.355 3.5932 0 0 0 0.40738 1 11312 11312 0.79363 0 1 + 18367 19542 11566 11572 21992 21992 0.08186116205172311 KPGRIGVF 8 Unmodified _KPGRIGVF_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MSMS UPN47_class_I_Rep_3 4 437.26751708984375 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 51.049 1 54.265 53.765 54.765 3.2163 0 0 0 0.40581 1 11328 11328 2.8892 0 1 + 18368 19542 11566 11572 21993 21993 0.08186116205172311 KPGRIGVF 8 Unmodified _KPGRIGVF_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MSMS UPN47_class_I_Rep_3 4 437.2677917480469 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 51.225 1 54.441 53.941 54.941 3.2163 0 0 0 0.40581 1 11382 11382 2.8892 0 1 + 18369 19542 11566 11572 21994 21994 0.08186116205172311 KPGRIGVF 8 Unmodified _KPGRIGVF_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MSMS UPN47_class_I_Rep_3 4 437.2679138183594 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 51.381 1 54.597 54.097 55.097 3.2163 0 0 0 0.40581 1 11430 11430 2.8892 0 1 + 18370 19542 11566 11572 21995 21995 0.08186116205172311 KPGRIGVF 8 Unmodified _KPGRIGVF_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MSMS UPN47_class_I_Rep_3 4 437.267822265625 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 51.829 1 55.034 54.534 55.534 3.2055 0 0 0 0.40738 1 11567 11567 0.79363 0 1 + 18371 19542 11566 11572 21996 21996 0.08186116205172311 KPGRQQAK 8 Unmodified _KPGRQQAK_ 0 0 0 REV__Tigger17a_dup1612|chr12:76832397-76832997:-|1.081935065453998|0.1308388137984239|3.05|151.0|37|2|anti-sense REV__Tigger17a_dup1612|chr12:76832397-76832997:-|1.081935065453998|0.1308388137984239|3.05|151.0|37|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 456.77227783203125 2 456.772326 911.530098 0.19965 9.1193E-05 -0.23913 -0.00010923 -0.039484 -1.8035E-05 456.77217101254837 84.393 0.39995 84.393 84.314 84.714 0 72 37 2 0 0 0 0.82752 1 20060 20060 5.2307 0 1 729700 + 18372 32601 11567 11573 21997 21997 0.07079429085740685 KPGRQQAK 8 Unmodified _KPGRQQAK_ 0 0 0 REV__Tigger17a_dup1612|chr12:76832397-76832997:-|1.081935065453998|0.1308388137984239|3.05|151.0|37|2|anti-sense REV__Tigger17a_dup1612|chr12:76832397-76832997:-|1.081935065453998|0.1308388137984239|3.05|151.0|37|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.77227783203125 2 456.772326 911.530098 -0.019571 -8.9396E-06 -0.084589 -3.8638E-05 -0.10416 -4.7577E-05 456.77219615677177 81.007 0.73104 84.391 84.128 84.859 3.3839 155 90 2 0 0 0 0.82752 2 20145 20145;20177 5.2307 0 1 315450 + 18373 32601 11567 11573 21998;21999 21998 0.07079429085740685 KPGRQQAK 8 Unmodified _KPGRQQAK_ 0 0 0 REV__Tigger17a_dup1612|chr12:76832397-76832997:-|1.081935065453998|0.1308388137984239|3.05|151.0|37|2|anti-sense REV__Tigger17a_dup1612|chr12:76832397-76832997:-|1.081935065453998|0.1308388137984239|3.05|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_1 5 456.77227783203125 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 80.877 1 84.439 83.939 84.939 3.5624 0 0 0 0.40404 1 19275 19275 5.2307 0 1 + 18374 32601 11567 11573 22000 22000 0.07079429085740685 KPGRTYLLA 9 Unmodified _KPGRTYLLA_ 0 0 0 ENST00000259239.7_1_2:131100080-131100272:+|nuORF ENST00000259239.7_1_2:131100080-131100272:+|nuORF ENST00000259239.7_1_2:131100080-131100272:+|nuORF MSMS UPN46_class_I_Rep_3 1 509.8037109375 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 81.959 1 81.959 81.459 82.459 0 0 0 0 0.39428 1 19386 19386 2.0598 0.21551 1 18375 5943 11568 11574 22001 22001 0.08902039576832976 KPGRVTNQ 8 Unmodified _KPGRVTNQ_ 0 0 0 nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-3|BRD2 nc|ENSG00000204256|P25440-3|BRD2 MSMS UPN46_class_I_Rep_3 1 450.2561340332031 2 450.256508 898.498464 NaN NaN NaN NaN NaN NaN NaN 76.206 1 76.206 75.706 76.706 0 0 0 0 0.40643 1 17762 17762 2.0598 0 1 18376 5508 11569 11575 22002 22002 0.04515436331791989 KPHFYKKF 8 Unmodified _KPHFYKKF_ 0 0 0 AluJr4_dup13948|chr12:68636425-68636714:-|4.013618649365211|0.0591690403314116|6.08|151.0|5|2|sense AluJr4_dup13948|chr12:68636425-68636714:-|4.013618649365211|0.0591690403314116|6.08|151.0|5|2|sense AluJr4_dup13948|chr12:68636425-68636714:-|4.013618649365211|0.0591690403314116|6.08|151.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 547.810546875 2 547.810919 1093.60729 NaN NaN NaN NaN NaN NaN NaN 16.297 1 19.82 19.32 20.32 3.5224 0 0 0 0.40746 1 1020 1020 0.69038 0 1 18377 194 11570 11576 22003 22003 0.06422647302065343 KPHHSLRT 8 Unmodified _KPHHSLRT_ 0 0 0 REV__AluSz_dup92608|chr19:7416904-7417212:-|1.4389643099481015|0.0060862165389067|7.89|151.0|12|1|anti-sense REV__AluSz_dup92608|chr19:7416904-7417212:-|1.4389643099481015|0.0060862165389067|7.89|151.0|12|1|anti-sense MSMS UPN46_class_I_Rep_3 1 488.2798156738281 2 488.277775 974.540997 NaN NaN NaN NaN NaN NaN NaN 74.05 1 74.05 73.55 74.55 0 0 0 0 0.40746 1 17177 17177 0.69038 0 1 + 18378 17215 11571 11577 22004 22004 0.0527083146005225 KPHKLQPV 8 Unmodified _KPHKLQPV_ 0 0 0 ENST00000497921.2_3_3:42861167-42906029:+|nuORF ENST00000497921.2_3_3:42861167-42906029:+|nuORF ENST00000497921.2_3_3:42861167-42906029:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 474.0630187988281 2 473.795269 945.575986 0.2378 0.00011267 -0.81906 -0.00038807 -0.58127 -0.0002754 473.7951025999566 41.638 0.047031 41.638 41.608 41.655 0 6 4 2 0 0 0 0.82752 1 8176 8176 2.5775 0 1 57654 18379 7112 11572 11578 22005 22005 0.10102074267979333 KPHLYQNT 8 Unmodified _KPHLYQNT_ 0 0 0 AluSx3_dup28935|chr19:3137503-3137810:+|1.0724997177538242|0.0028674953620847|8.55|151.0|7|3|sense AluSx3_dup28935|chr19:3137503-3137810:+|1.0724997177538242|0.0028674953620847|8.55|151.0|7|3|sense AluSx3_dup28935|chr19:3137503-3137810:+|1.0724997177538242|0.0028674953620847|8.55|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 500.7746276855469 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 43.997 1 47.238 46.738 47.738 3.2419 0 0 0 0.39996 1 9184 9184 7.9102 0 1 18380 331 11573 11579 22006 22006 0.01400303128991709 KPHQKSGQ 8 Unmodified _KPHQKSGQ_ 0 0 0 L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|30|1|sense;L1PA6_dup1497|chr4:67440052-67442046:+|1.8566176616855383|0.3830494445611597|2.28|151.0|8|1|sense L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|30|1|sense L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|30|1|sense MSMS UPN48_class_I_Rep_1 5 455.2489318847656 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 29.183 1 32.733 32.233 33.233 3.5499 0 0 0 0.40643 1 4017 4017 2.0598 0 1 18381 14562 11574 11580 22007 22007 0.02491149814761684 KPHYLSPKTS 10 Unmodified _KPHYLSPKTS_ 0 0 0 L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|81|2|sense L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|81|2|sense L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|81|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.8068237304688 2 579.319306 1156.62406 0.4275 0.00024766 -0.4746 -0.00027495 -0.047105 -2.7289E-05 579.3190658131027 40.033 0.79583 43.774 43.409 44.205 3.7413 141 83 2 0 0 0 0.3776 1 7181 7181 21.537 1.0834 1 230800 18382 14841 11575 11581 22008 22008 0.05201103397371298 KPIFKATLV 9 Unmodified _KPIFKATLV_ 0 0 0 REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|88|3|sense REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|88|3|sense MSMS UPN47_class_I_Rep_2 3 508.8276062011719 2 508.828778 1015.643 NaN NaN NaN NaN NaN NaN NaN 103.18 1 106.7 106.2 107.2 3.5231 0 0 0 0.39518 1 25090 25090 1.8442 0 1 + 18383 25088 11576 11582 22009 22009 0.13580684759074302 KPIHRPMFS 9 Unmodified _KPIHRPMFS_ 0 0 0 REV__L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|2|1|sense REV__L1MB4_dup4134|chr9:19294397-19295080:+|1.0795068731640372|0.0369452138947973|4.87|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 556.3057250976562 2 556.805311 1111.59607 0.50809 0.00028291 2.4024 0.0013377 2.9105 0.0016206 556.8067365352828 67.819 0.20477 71.316 71.276 71.481 3.4964 22 16 2 0 0 0 0.12462 1 15605 15605 1.8442 1.8442 1 121100 + 18384 25972 11577 11583 22010 22010 0.04473501936286084 KPILKYYWK 9 Unmodified _KPILKYYWK_ 0 0 0 L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 619.8705444335938 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.486 1 89.866 89.366 90.366 3.3801 0 0 0 0.4007 1 21676 21676 0.52476 0 1 18385 12458 11578 11584 22011 22011 0.11296331713197105 KPILKYYWKYK 11 Unmodified _KPILKYYWKYK_ 0 0 0 L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.9687805175781 3 510.634146 1528.88061 0.32666 0.0001668 -0.033033 -1.6868E-05 0.29363 0.00014994 510.63409721017194 97.292 0.39893 100.71 100.49 100.89 3.4216 81 55 2 0 0 0 0.68478 1 24111 24111 0.094841 0 1 207310 18386 12458 11579 11585 22012 22012 0.13732205901624184 KPILNRKRVLI 11 Unmodified _KPILNRKRVLI_ 0 0 0 ENST00000433446.1_1_7:86781137-86781239:-|nuORF ENST00000433446.1_1_7:86781137-86781239:-|nuORF ENST00000433446.1_1_7:86781137-86781239:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 450.2813720703125 3 450.641634 1348.90307 0.023558 1.0616E-05 0.54578 0.00024595 0.56934 0.00025657 450.64197877710006 42.166 0.04277 45.674 45.634 45.677 3.5079 6 4 2 0 0 0 22.551 1 7763 7763 0.094841 0 1 59634 18387 6740 11580 11586 22013 22013 0.2425785008992989 KPIYICFDE 9 Unmodified _KPIYICFDE_ 0 0 0 REV__L1MB7_dup17105|chr13:112537074-112537904:-|3.12671093520858|0.0717687590555459|5.45|151.0|48|2|anti-sense REV__L1MB7_dup17105|chr13:112537074-112537904:-|3.12671093520858|0.0717687590555459|5.45|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2535400390625 2 564.275718 1126.53688 NaN NaN NaN NaN NaN NaN NaN 31.538 1 35.179 34.679 35.679 3.641 0 0 0 0.39518 1 4758 4758 1.8442 0.36234 1 + 18388 26164 11581 11587 22014 22014 -0.021324388685798112 KPKKAPAKK 9 Unmodified _KPKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MSMS UPN46_class_I_Rep_3 1 499.2906494140625 2 498.339844 994.665135 0.095491 4.7587E-05 0.59918 0.0002986 0.69467 0.00034618 498.34023010786063 32.177 0.082909 32.177 32.126 32.209 0 7 5 2 0 0 0 0.50088 1 5462 5462 0.52476 0 1 71836 18389 5469 11582 11588 22015 22015 0.16758909227496588 KPKLNRKS 8 Unmodified _KPKLNRKS_ 0 0 0 REV__L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|41|2|sense REV__L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|41|2|sense MSMS UPN48_class_I_Rep_1 5 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 114.68 1 118.31 117.81 118.81 3.6301 0 0 0 0.40746 1 27881 27881 0.69038 0 1 + 18390 24113 11583 11589 22016 22016 0.12232861670997863 KPKPTLKM 8 Unmodified _KPKPTLKM_ 0 0 0 REV__ENST00000220913.9_1_8:141525302-141525362:+|nuORF REV__ENST00000220913.9_1_8:141525302-141525362:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.7951354980469 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 25.994 1 29.756 29.256 30.256 3.7624 0 0 0 0.40746 1 3653 3653 0.69038 0 1 + 18391 21483 11584 11590 22017 22017 0.10008482818830089 KPKQHRQKQHK 11 Unmodified _KPKQHRQKQHK_ 0 0 0 REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 481.6191101074219 3 481.619892 1441.83785 -0.38023 -0.00018313 -0.95905 -0.0004619 -1.3393 -0.00064503 481.61952473678366 12.964 0.20975 16.414 16.351 16.561 3.45 29 16 2 0 0 0 0.67113 1 207 207 1.3296 0.82369 1 54599 + 18392 30074 11585 11591 22018 22018 0.1346024861677506 KPKQHRQKQHK 11 Unmodified _KPKQHRQKQHK_ 0 0 0 REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.6190490722656 3 481.619892 1441.83785 -0.20443 -9.8459E-05 -1.1719 -0.00056443 -1.3764 -0.00066289 481.6192552197166 13.027 0.25696 16.415 16.333 16.59 3.388 38 23 3 0 0 0 0.68081 1 221 221 0.45452 0 1 60022 + 18393 30074 11585 11591 22019 22019 0.1346024861677506 KPKQHRQKQHK 11 Unmodified _KPKQHRQKQHK_ 0 0 0 REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 481.619892 1441.83785 -0.38023 -0.00018313 -0.95905 -0.0004619 -1.3393 -0.00064503 481.61952473678366 12.964 0.20975 16.414 16.351 16.561 3.45 -0.010185 0.0001125 NaN 1.3296 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 54599 + 18394 30074 11585 11591 0.1346024861677506 KPKQHRQKQHK 11 Unmodified _KPKQHRQKQHK_ 0 0 0 REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 481.619892 1441.83785 -0.20443 -9.8459E-05 -1.1719 -0.00056443 -1.3764 -0.00066289 481.6192552197166 13.027 0.25696 16.415 16.333 16.59 3.388 -0.008851 -0.0001951 NaN 1.3296 38 23 3 NaN NaN NaN NaN 0 NaN NaN 0 60022 + 18395 30074 11585 11591 0.1346024861677506 KPKQHRQKQHK 11 Unmodified _KPKQHRQKQHK_ 0 0 0 REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|40|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 481.619892 1441.83785 -0.78312 -0.00037717 -0.91973 -0.00044296 -1.7029 -0.00082013 481.61947743966897 13.069 0.25943 16.443 16.366 16.625 3.3734 0.019036 0.00016931 NaN 1.3296 50 27 3 NaN NaN NaN NaN 0 NaN NaN 0 54486 + 18396 30074 11585 11591 0.1346024861677506 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.3806762695312 2 627.382437 1252.75032 0.55795 0.00035005 -0.19914 -0.00012494 0.35881 0.00022511 627.8838963848341 103.68 0.57166 107.44 107.1 107.67 3.7627 154 85 3 0 0 0 0.59712 1 25439 25439 5.2969 0.39987 1 43496000 18397 9305 11586 11592 22020 22020 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.8843994140625 2 627.382437 1252.75032 0.55824 0.00035023 0.10826 6.792E-05 0.6665 0.00041815 627.8839130753673 104.69 0.60113 108.45 108.4 109 3.7627 200 90 3 0 0 0 0.59712 1 25727 25727 5.2969 0.39987 1 64161000 18398 9305 11586 11592 22021 22021 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.3831787109375 2 627.382437 1252.75032 0.55788 0.00035 -0.040792 -2.5592E-05 0.51708 0.00032441 627.3823901008832 105.32 0.37713 109.06 108.97 109.35 3.7395 100 58 3 0 0 0 0.59712 1 25889 25889 5.2969 1.7004 1 1737600 18399 9305 11586 11592 22022 22022 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 627.3837890625 2 627.382437 1252.75032 0.63469 0.00039819 0.41474 0.0002602 1.0494 0.00065839 627.382924322431 103.75 0.2776 107.28 107.18 107.46 3.5289 79 42 3 0 0 0 0.59712 1 25233 25233 5.2969 0.39987 1 46493000 18400 9305 11586 11592 22023 22023 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 627.3819580078125 2 627.382437 1252.75032 0.6346 0.00039814 0.85439 0.00053603 1.489 0.00093417 627.8848917391421 104.02 0.15936 107.55 107.45 107.61 3.5289 38 25 2 0 0 0 0.59712 1 25259 25259 5.2969 0.39987 1 36253000 18401 9305 11586 11592 22024 22024 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 627.3836669921875 2 627.382437 1252.75032 0.63468 0.00039819 0.22075 0.00013849 0.85543 0.00053668 627.3826687118247 104.7 0.61967 108.23 108.15 108.77 3.5289 167 96 3 0 0 0 0.59712 3 25412 25412;25481;25506 5.2969 2.3016 1 36403000 18402 9305 11586 11592 22025;22026;22027 22025 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 627.3831787109375 2 627.382437 1252.75032 0.51259 0.00032159 -0.017463 -1.0956E-05 0.49513 0.00031064 627.3825715440909 103.83 0.61166 107.35 107.01 107.62 3.5205 169 92 3 0 0 0 0.59712 2 25503 25503;25526 5.2969 0.39987 1 47057000 18403 9305 11586 11592 22028;22029 22028 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 627.3815307617188 2 627.382437 1252.75032 0.51264 0.00032162 -0.12438 -7.8031E-05 0.38826 0.00024359 627.3824906753117 104.93 0.48431 108.46 108.38 108.86 3.5308 171 76 3 0 0 0 0.59712 3 25728 25728;25754;25758 5.2969 1.7004 1 24231000 18404 9305 11586 11592 22030;22031;22032 22030 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 627.384033203125 2 627.382437 1252.75032 0.42852 0.00026885 0.23716 0.00014879 0.66568 0.00041764 627.8840147051917 104.41 0.43399 108.03 107.93 108.36 3.6247 167 62 3 0 0 0 0.59712 1 25204 25204 5.2969 0.39987 1 53198000 18405 9305 11586 11592 22033 22033 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 627.3822631835938 2 627.382437 1252.75032 0.49519 0.00031067 0.041365 2.5952E-05 0.53656 0.00033663 627.3826773031997 103.43 0.47246 107.14 106.84 107.31 3.7108 157 72 3 0 0 0 0.59712 2 24450 24450;24491 5.2969 1.7004 1 54708000 18406 9305 11586 11592 22034;22035 22034 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 627.3809204101562 2 627.382437 1252.75032 0.60297 0.00037829 -0.18345 -0.00011509 0.41952 0.0002632 627.3824632728158 103.45 0.50217 107.19 106.91 107.41 3.7434 152 79 3 0 0 0 0.59712 2 24434 24434;24455 5.2969 0.39987 1 41324000 18407 9305 11586 11592 22036;22037 22036 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 627.382437 1252.75032 0.55767 0.00034987 0.187 0.00011732 0.74467 0.00046719 627.8847218830218 104.02 0.042458 107.79 107.75 107.8 3.7627 0.09782 -0.00091262 NaN 5.2969 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 21163000 18408 9305 11586 11592 0.1340560990265658 KPKRSVPIDTI 11 Unmodified _KPKRSVPIDTI_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|12|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 627.382437 1252.75032 0.42826 0.00026868 4.8789 0.0030609 5.3072 0.0033296 627.3863960891271 104.1 0.017899 107.72 107.71 107.72 3.6209 0.032829 0.0049746 NaN 5.2969 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 12812000 18409 9305 11586 11592 0.1340560990265658 KPKSDIILPQL 11 Unmodified _KPKSDIILPQL_ 0 0 0 L1MA4A_dup4417|chr11:72880887-72881853:+|1.9937998010068168|0.0141294370754444|7.14|151.0|18|2|sense L1MA4A_dup4417|chr11:72880887-72881853:+|1.9937998010068168|0.0141294370754444|7.14|151.0|18|2|sense L1MA4A_dup4417|chr11:72880887-72881853:+|1.9937998010068168|0.0141294370754444|7.14|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3865356445312 2 626.387188 1250.75982 0.42779 0.00026796 0.06491 4.0659E-05 0.4927 0.00030862 626.3871281359764 105.15 0.33216 108.77 108.69 109.02 3.6247 67 46 2 0 0 0 0.65821 1 25315 25315 2.4985 0.84587 1 4571900 18410 9813 11587 11593 22038 22038 0.14447378188197035 KPKSRTYLKP 10 Unmodified _KPKSRTYLKP_ 0 0 0 REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L MSMS UPN47_class_I_Rep_3 4 406.5838317871094 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 103.74 1 107.26 106.76 107.76 3.5205 0 0 0 0.53105 1 25447 25447 1.7423 0 1 + 18411 20319 11588 11594 22039 22039 0.1294964459377752 KPKSRTYLKP 10 Unmodified _KPKSRTYLKP_ 0 0 0 REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L MSMS UPN48_class_I_Rep_2 6 406.5841369628906 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 103.19 1 106.9 106.4 107.4 3.7108 0 0 0 0.53105 1 24428 24428 1.7423 0.14999 1 + 18412 20319 11588 11594 22040 22040 0.1294964459377752 KPKVERVI 8 Unmodified _KPKVERVI_ 0 0 0 Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|31|2|sense Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|31|2|sense Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|31|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 485.2369079589844 2 484.816202 967.617851 -0.30793 -0.00014929 0.46938 0.00022756 0.16144 7.827E-05 484.81638505801783 30.722 0.69358 34.466 34.176 34.87 3.7449 96 59 2 0 0 0 0.72333 1 5121 5121 8.5933 0.68312 1 153020 18413 33007 11589 11595 22041 22041 0.13274629956515582 KPKVERVI 8 Unmodified _KPKVERVI_ 0 0 0 Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|31|2|sense Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|31|2|sense Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|31|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 485.237060546875 2 484.816202 967.617851 -0.47252 -0.00022909 0.48245 0.0002339 0.0099249 4.8118E-06 484.8163648815336 31.353 0.84407 34.652 34.289 35.133 3.2991 125 71 2 0 0 0 0.72333 1 5323 5323 7.2892 0.56607 1 115270 18414 33007 11589 11595 22042 22042 0.13274629956515582 KPKVHRLG 8 Unmodified _KPKVHRLG_ 0 0 0 L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|42|2|sense L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|42|2|sense L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|42|2|sense MSMS UPN47_class_I_Rep_2 3 467.80096435546875 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 93.661 1 97.13 96.63 97.63 3.4687 0 0 0 0.40746 1 23105 23105 0.69038 0 1 18415 11262 11590 11596 22043 22043 0.11776896362130174 KPKVSRSC 8 Unmodified _KPKVSRSC_ 0 0 0 L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|138|3|sense L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|138|3|sense L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|138|3|sense MSMS UPN47_class_I_Rep_1 2 452.7562255859375 2 452.755287 903.496021 NaN NaN NaN NaN NaN NaN NaN 20.181 1 23.793 23.293 24.293 3.6118 0 0 0 0.40746 1 1979 1979 0.69038 0.16561 1 18416 15096 11591 11597 22044 22044 0.04041264602494721 KPKWCHRP 8 Unmodified _KPKWCHRP_ 0 0 0 REV__Charlie15b_dup1411|chr13:28237774-28238127:-|1.249905904261159|0.02637289270681|5.57|151.0|28|2|anti-sense REV__Charlie15b_dup1411|chr13:28237774-28238127:-|1.249905904261159|0.02637289270681|5.57|151.0|28|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.284912109375 2 526.284546 1050.55454 -0.27996 -0.00014734 -0.67734 -0.00035647 -0.9573 -0.00050381 526.2843286390707 32.142 0.70546 35.611 35.366 36.072 3.4691 66 52 2 0 0 0 0.82752 1 5543 5543 5.2307 0.47466 1 90464 + 18417 17288 11592 11598 22045 22045 0.0312836596760917 KPLANGVSRW 10 Unmodified _KPLANGVSRW_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MSMS UPN46_class_I_Rep_3 1 564.37939453125 2 564.31964 1126.62473 NaN NaN NaN NaN NaN NaN NaN 45.173 1 45.173 44.673 45.673 0 0 0 0 0.53105 1 9160 9160 2.7352 1.0826 1 18418 16850 11593 11599 22046 22046 0.06647942837071241 KPLITTRFHR 10 Unmodified _KPLITTRFHR_ 0 0 0 L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|31|2|sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|31|2|sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|31|2|sense MSMS UPN47_class_I_Rep_1 2 634.8811645507812 2 634.882939 1267.75132 NaN NaN NaN NaN NaN NaN NaN 12.844 1 16.294 15.794 16.794 3.45 0 0 0 0.53105 1 169 169 0.35063 0 1 18419 9253 11594 11600 22047 22047 0.1281586906220582 KPLKRGNS 8 Unmodified _KPLKRGNS_ 0 0 0 REV__L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|27|1|sense REV__L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|27|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.2745056152344 2 450.274701 898.534849 0.019112 8.6057E-06 0.40001 0.00018012 0.41912 0.00018872 450.27502409372744 86.022 0.451 89.635 89.434 89.885 3.613 65 48 2 0 0 0 0.82752 1 20573 20573 2.3027 0.4585 1 95000 + 18420 24325 11595 11601 22048 22048 0.08152313228515595 KPLLDIGL 8 Unmodified _KPLLDIGL_ 0 0 0 L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|22|2|sense;L1PB1_dup11088|chr14:67923598-67924410:-|1.2241406358612803|0.012563424004481|6.61|151.0|2|1|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|61|1|sense L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|22|2|sense L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 434.780029296875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 52.491 1 52.491 51.991 52.991 0 0 0 0 0.40472 1 11227 11227 4.3292 2.0265 1 18421 14166 11596 11602 22049 22049 0.10388447425270897 KPLLPHAH 8 Unmodified _KPLLPHAH_ 0 0 0 MER4E1_dup716|chr11:121616735-121617517:-|2.924490594956012|0.141928451777243|4.36|151.0|8|1|sense MER4E1_dup716|chr11:121616735-121617517:-|2.924490594956012|0.141928451777243|4.36|151.0|8|1|sense MER4E1_dup716|chr11:121616735-121617517:-|2.924490594956012|0.141928451777243|4.36|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 456.77203369140625 2 456.774337 911.534121 NaN NaN NaN NaN NaN NaN NaN 17.981 1 21.531 21.031 22.031 3.5504 0 0 0 0.40738 1 1429 1429 0.79363 0 1 18422 16046 11597 11603 22050 22050 0.07481518579459134 KPLPSMSLR 9 Unmodified _KPLPSMSLR_ 0 0 0 HERVH-int_dup5197|chr16:8843827-8845026:-|1.465704079377304|0.2419485283225036|2.6|151.0|14|2|sense HERVH-int_dup5197|chr16:8843827-8845026:-|1.465704079377304|0.2419485283225036|2.6|151.0|14|2|sense HERVH-int_dup5197|chr16:8843827-8845026:-|1.465704079377304|0.2419485283225036|2.6|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 514.72265625 2 514.799694 1027.58484 NaN NaN NaN NaN NaN NaN NaN 27.632 1 31.398 30.898 31.898 3.7662 0 0 0 0.39598 1 4140 4140 1.6526 0.85899 1 18423 8160 11598 11604 22051 22051 0.07214679842149962 KPLPWRSPLL 10 Unmodified _KPLPWRSPLL_ 0 0 0 nc|ENSG00000159714|Q8WTX9|ZDHHC1 nc|ENSG00000159714|Q8WTX9|ZDHHC1 nc|ENSG00000159714|Q8WTX9|ZDHHC1 MSMS UPN46_class_I_Rep_3 1 603.869384765625 2 603.871508 1205.72846 NaN NaN NaN NaN NaN NaN NaN 79.978 1 79.978 79.478 80.478 0 0 0 0 0.53105 1 18818 18818 3.2813 1.4371 1 18424 16726 11599 11605 22052 22052 0.13382849944741793 KPLQKGQT 8 Unmodified _KPLQKGQT_ 0 0 0 ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-1|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF;ENST00000467542.5_1_13:20411687-20425669:-|nuORF;nc|ENSG00000132950|Q9UJ78-5|ZMYM5;ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF ENSG00000132950|ENST00000337963|ZMYM5;ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000132950|ENST00000337963|ZMYM5 MSMS UPN48_class_I_Rep_1 5 450.2691345214844 2 450.269084 898.523616 NaN NaN NaN NaN NaN NaN NaN 108.15 1 111.78 111.28 112.28 3.6313 0 0 0 0.39819 1 26142 26142 8.5933 1.304 1 18425 2783;2362 11600 11606 22053 22053 0.07029491134380805 KPLQPQIAN 9 Unmodified _KPLQPQIAN_ 0 0 0 L1MCb_dup1513|chr10:20080783-20081220:+|1.179279766238797|0.0333602763522285|5.14|148.0|11|3|sense L1MCb_dup1513|chr10:20080783-20081220:+|1.179279766238797|0.0333602763522285|5.14|148.0|11|3|sense L1MCb_dup1513|chr10:20080783-20081220:+|1.179279766238797|0.0333602763522285|5.14|148.0|11|3|sense MSMS UPN47_class_I_Rep_2 3 504.80926513671875 2 504.795466 1007.57638 NaN NaN NaN NaN NaN NaN NaN 110.83 1 114.35 113.85 114.85 3.5271 0 0 0 0.38478 1 26980 26980 4.3292 0 1 18426 11846 11601 11607 22054 22054 0.07289449197162412 KPLRKMEKS 9 Unmodified _KPLRKMEKS_ 0 0 0 nc|ENSG00000148842|Q9H8M5-3|CNNM2;nc|ENSG00000148842|Q9H8M5-2|CNNM2;ENSG00000148842|ENST00000369878|CNNM2 nc|ENSG00000148842|Q9H8M5-3|CNNM2 nc|ENSG00000148842|Q9H8M5-3|CNNM2 MSMS UPN48_class_I_Rep_2 6 558.8320922851562 2 558.831526 1115.6485 NaN NaN NaN NaN NaN NaN NaN 35.842 1 39.53 39.03 40.03 3.6877 0 0 0 0.39598 1 5961 5961 1.6526 0.17072 1 18427 3522 11602 11608 22055 22055 0.09530040279241803 KPLSELFKF 9 Unmodified _KPLSELFKF_ 0 0 0 REV__L1MB4_dup7699|chr17:30981399-30982188:-|1.8562980945827527|0.2828717487563946|2.71|151.0|4|1|sense REV__L1MB4_dup7699|chr17:30981399-30982188:-|1.8562980945827527|0.2828717487563946|2.71|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.8233642578125 2 554.823692 1107.63283 0.38838 0.00021548 -0.62457 -0.00034653 -0.23619 -0.00013104 554.8231841506561 56.666 0.5751 59.838 59.461 60.036 3.1721 61 34 2 0 0 0 0.39745 1 12952 12952 8.1555 0 1 130790 + 18428 26020 11603 11609 22056 22056 0.0833207703383323 KPLSKLYEF 9 Unmodified _KPLSKLYEF_ 0 0 0 REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|107|3|sense REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|107|3|sense MSMS UPN48_class_I_Rep_3 7 562.8219604492188 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 78.673 1 82.294 81.794 82.794 3.6216 0 0 0 0.39036 1 18629 18629 2.9952 0.93549 1 + 18429 24066 11604 11610 22057 22057 0.07087773171224399 KPLVELMM 8 Unmodified _KPLVELMM_ 0 0 0 REV__Tigger2b_Pri_dup1839|chr17:396725-397298:-|2.8910097114598847|0.1427218831822628|4.34|150.0|17|3|sense REV__Tigger2b_Pri_dup1839|chr17:396725-397298:-|2.8910097114598847|0.1427218831822628|4.34|150.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 480.75372314453125 2 480.766474 959.518396 NaN NaN NaN NaN NaN NaN NaN 40.37 1 44.036 43.536 44.536 3.6668 0 0 0 0.40738 1 7997 7997 0.79363 0 1 + 18430 32698 11605 11611 22058 22058 0.037017279558881455 KPLVVWWK 8 Unmodified _KPLVVWWK_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS UPN48_class_I_Rep_1 5 528.3221435546875 2 528.323663 1054.63277 NaN NaN NaN NaN NaN NaN NaN 112.72 1 116.35 115.85 116.85 3.6321 0 0 0 0.40746 1 27361 27361 0.69038 0.088878 1 18431 3502;16708 11606 11612 22059 22059 0.10764121824490758 KPMEAYALKA 10 Unmodified _KPMEAYALKA_ 0 0 0 nc|ENSG00000056291|Q9Y5X5|NPFFR2;ENST00000506359.1_1_4:73012322-73013526:+|nuORF;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 MSMS UPN48_class_I_Rep_1 5 561.3045043945312 2 561.30481 1120.59507 NaN NaN NaN NaN NaN NaN NaN 29.068 1 32.618 32.118 33.118 3.5499 0 0 0 0.53105 1 3987 3987 1.3295 0.63916 1 18432 16625 11607 11613 22060 22060 0.03959242776704741 KPNHLLQTL 9 Unmodified _KPNHLLQTL_ 0 0 0 REV__L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|178|3|anti-sense REV__L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|178|3|anti-sense MSMS UPN47_class_I_Rep_3 4 532.3187866210938 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 80.199 1 83.508 83.008 84.008 3.309 0 0 0 0.37692 1 20072 20072 6.2058 0 1 + 18433 30451 11608 11614 22061 22061 0.0897742460556401 KPNKMMFGK 9 Unmodified _KPNKMMFGK_ 0 0 0 REV__L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|35|3|sense REV__L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.787109375 2 540.788272 1079.56199 -0.10371 -5.6083E-05 -1.3989 -0.0007565 -1.5026 -0.00081258 540.7875435376017 12.789 0.34179 16.239 16.106 16.448 3.45 57 31 3 0 0 0 0.46869 1 146 146 3.9444 0 1 203530 + 18434 30397 11609 11615 22062 22062 0.025393374530267465 KPNRHAYA 8 Unmodified _KPNRHAYA_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MSMS UPN48_class_I_Rep_2 6 478.974853515625 2 478.756675 955.498798 NaN NaN NaN NaN NaN NaN NaN 76.718 1 80.33 79.83 80.83 3.6116 0 0 0 0.40738 1 18122 18122 0.79363 0 1 + 18435 21203 11610 11616 22063 22063 0.019268560516479738 KPNSTIHQK 9 Unmodified _KPNSTIHQK_ 0 0 0 L1MA1_dup1274|chr5:76898465-76898923:-|1.760022547273118|0.0018385285601252|9.9|146.0|5|1|sense L1MA1_dup1274|chr5:76898465-76898923:-|1.760022547273118|0.0018385285601252|9.9|146.0|5|1|sense L1MA1_dup1274|chr5:76898465-76898923:-|1.760022547273118|0.0018385285601252|9.9|146.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 527.2720947265625 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 24.743 1 28.226 27.726 28.726 3.483 0 0 0 0.3967 1 3330 3330 1.4819 0.68827 1 18436 9259 11611 11617 22064 22064 0.05371663566097595 KPPLRQWK 8 Unmodified _KPPLRQWK_ 0 0 0 REV__ENSG00000186094|ENST00000371839|AGBL4 REV__ENSG00000186094|ENST00000371839|AGBL4 MSMS UPN46_class_I_Rep_3 1 526.8213500976562 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 29.663 1 29.663 29.163 30.163 0 0 0 0 0.40746 1 4728 4728 0.69038 0 1 + 18437 20874 11612 11618 22065 22065 0.10533452050640335 KPPPGRGLGS 10 Unmodified _KPPPGRGLGS_ 0 0 0 nc|ENSG00000120913|Q96JY6-2|PDLIM2 nc|ENSG00000120913|Q96JY6-2|PDLIM2 nc|ENSG00000120913|Q96JY6-2|PDLIM2 MSMS UPN48_class_I_Rep_1 5 483.280517578125 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 67.507 1 70.958 70.458 71.458 3.4516 0 0 0 0.53105 1 15521 15521 2.7352 0.15772 1 18438 16675 11613 11619 22066 22066 0.06172295882947765 KPPPKKKM 8 Unmodified _KPPPKKKM_ 0 0 0 ENSG00000130165|ENST00000252445|ELOF1 ENSG00000130165|ENST00000252445|ELOF1 ENSG00000130165|ENST00000252445|ELOF1 MSMS UPN46_class_I_Rep_3 1 477.3013610839844 2 477.301873 952.589193 NaN NaN NaN NaN NaN NaN NaN 109.44 1 109.44 108.94 109.94 0 0 0 0 0.40625 1 26875 26875 2.3027 0 1 18439 2642 11614 11620 22067 22067 0.11100189055719056 KPPRFPHI 8 Unmodified _KPPRFPHI_ 0 0 0 REV__AluSx_dup108242|chr19:45856073-45856349:+|1.611788959045687|0.3250344464038407|2.31|151.0|18|2|anti-sense REV__AluSx_dup108242|chr19:45856073-45856349:+|1.611788959045687|0.3250344464038407|2.31|151.0|18|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2966613769531 2 496.295436 990.57632 0.058077 2.8823E-05 0.4886 0.00024249 0.54668 0.00027132 496.2954268381254 30.562 0.099831 30.562 30.477 30.576 0 14 6 3 0 0 0 0.82752 1 4969 4969 2.3027 0.4585 1 231950 + 18440 17133 11615 11621 22068 22068 0.08065493987851369 KPPRFPHI 8 Unmodified _KPPRFPHI_ 0 0 0 REV__AluSx_dup108242|chr19:45856073-45856349:+|1.611788959045687|0.3250344464038407|2.31|151.0|18|2|anti-sense REV__AluSx_dup108242|chr19:45856073-45856349:+|1.611788959045687|0.3250344464038407|2.31|151.0|18|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2951965332031 2 496.295436 990.57632 -0.073104 -3.6281E-05 -0.041263 -2.0479E-05 -0.11437 -5.676E-05 496.29542013670005 24.626 0.2735 24.626 24.429 24.702 0 46 28 3 0 0 0 0.72333 1 3223 3223 2.3027 1.6124 1 160070 + 18441 17133 11615 11621 22069 22069 0.08065493987851369 KPPRLWYFV 9 Unmodified _KPPRLWYFV_ 0 0 0 MLT1A0_dup20426|chr22:24394168-24394531:-|1.0411327630790752|0.0352046230417058|4.89|151.0|5|1|sense;MLT1A_dup73|chr1:26710887-26711114:-|1.8113328566509037|0.0095624530404778|7.57|151.0|8|3|sense MLT1A0_dup20426|chr22:24394168-24394531:-|1.0411327630790752|0.0352046230417058|4.89|151.0|5|1|sense MLT1A0_dup20426|chr22:24394168-24394531:-|1.0411327630790752|0.0352046230417058|4.89|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 603.6807250976562 2 603.345126 1204.6757 NaN NaN NaN NaN NaN NaN NaN 99.381 1 99.381 98.881 99.881 0 0 0 0 0.39518 1 24208 24208 1.8442 0.51471 1 18442 16239 11616 11622 22070 22070 0.08154891881918047 KPPSLLHSV 9 Unmodified _KPPSLLHSV_ 0 0 0 MSTA-int_dup7|chr1:8443480-8444555:+|1.110408205091761|0.0765046737188405|3.86|151.0|61|3|anti-sense MSTA-int_dup7|chr1:8443480-8444555:+|1.110408205091761|0.0765046737188405|3.86|151.0|61|3|anti-sense MSTA-int_dup7|chr1:8443480-8444555:+|1.110408205091761|0.0765046737188405|3.86|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.2922058105469 2 489.292559 976.570566 -0.29528 -0.00014448 0.19921 9.7472E-05 -0.096075 -4.7009E-05 489.2926057221428 31.569 0.72939 35.298 34.944 35.673 3.7293 93 53 2 0 0 0 0.47197 1 5369 5369 3.5965 0.60125 1 116010 18443 16562 11617 11623 22071 22071 0.08134350685531899 KPPSPRNSI 9 Unmodified _KPPSPRNSI_ 0 0 0 REV__ENST00000345093.8_1_12:56599827-56600100:-|nuORF REV__ENST00000345093.8_1_12:56599827-56600100:-|nuORF MSMS UPN48_class_I_Rep_3 7 498.2852478027344 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 20.889 1 24.556 24.056 25.056 3.6667 0 0 0 0.3967 1 1869 1869 1.4819 0.68827 1 + 18444 21842 11618 11624 22072 22072 0.05848278537382612 KPQKWIPR 8 Unmodified _KPQKWIPR_ 0 0 0 REV__L1ME1_dup3428|chr2:68225685-68226347:+|1.6821492971544498|0.007876957314776|7.74|151.0|4|1|sense REV__L1ME1_dup3428|chr2:68225685-68226347:+|1.6821492971544498|0.007876957314776|7.74|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 526.8217163085938 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.6 117.1 118.1 3.572 0 0 0 0.40746 1 28165 28165 0.69038 0 1 + 18445 27763 11619 11625 22073 22073 0.10533452050640335 KPQTRWIHSQ 10 Unmodified _KPQTRWIHSQ_ 0 0 0 L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|20|2|sense;L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|17|1|sense L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|20|2|sense L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|20|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 640.3461303710938 2 640.846553 1279.67855 0.74909 0.00048005 -1.0927 -0.00070028 -0.34366 -0.00022023 641.347127770086 96.234 0.36459 96.234 95.995 96.36 0 122 40 5 0 0 0 0.84575 1 23387 23387 2.9952 0 1 1165700 18446 13556 11620 11626 22074 22074 0.04990115268788031 KPQTRWIHSQ 10 Unmodified _KPQTRWIHSQ_ 0 0 0 L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|20|2|sense;L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|17|1|sense L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|20|2|sense L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|20|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 640.846553 1279.67855 0.49958 0.00032015 -0.51296 -0.00032873 -0.013386 -8.5784E-06 641.3470779090725 92.304 0.067322 96.067 96.045 96.112 3.7629 -0.083722 0.00039201 NaN 2.9952 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 188150 18447 13556 11620 11626 0.04990115268788031 KPRAALLSI 9 Unmodified _KPRAALLSI_ 0 0 0 REV__ENSG00000143797|ENST00000305997|MBOAT2 REV__ENSG00000143797|ENST00000305997|MBOAT2 MULTI-SECPEP UPN47_class_I_Rep_2 3 485.23712158203125 2 484.816202 967.617851 -0.17144 -8.3117E-05 0.28638 0.00013884 0.11494 5.5725E-05 484.81624970893165 30.943 0.81524 34.425 34.245 35.06 3.4821 118 68 2 0 0 0 0.12099 1 5280 5280 6.7232 1.9672 1 125920 + 18448 19464 11621 11627 22075 22075 0.13274629956515582 KPRHLFPP 8 Unmodified _KPRHLFPP_ 0 0 0 REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955322265625 2 496.295436 990.57632 -0.026779 -1.329E-05 0.29319 0.00014551 0.26641 0.00013222 496.2955066500889 26.664 0.3514 26.664 26.51 26.861 0 44 25 3 0 0 0 0.82752 1 3869 3869 2.5775 0.27475 1 987690 + 18449 22539 11622 11628 22076 22076 0.0806549398784 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 410.2314453125 3 410.231412 1227.67241 0.094676 3.8839E-05 0.6223 0.00025529 0.71697 0.00029413 410.23155130215946 103.55 0.087814 107.33 107.27 107.36 3.7788 23 13 2 0 0 0 0.46639 1 25453 25453 4.1895 0.60244 1 17914000 18450 10291 11623 11629 22077 22077 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 410.2317810058594 3 410.231412 1227.67241 0.094708 3.8852E-05 0.80344 0.0003296 0.89815 0.00036845 410.2318083002832 104.65 0.20642 108.42 108.33 108.53 3.7627 53 29 3 0 0 0 0.48618 1 25715 25715 2.086 0.17963 1 17847000 18451 10291 11623 11629 22078 22078 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 410.5660095214844 3 410.231412 1227.67241 0.094681 3.8841E-05 0.16143 6.6222E-05 0.25611 0.00010506 410.23136036325445 104.82 0.66766 108.56 108.47 109.14 3.7395 154 102 2 0 0 0 0.46639 3 25771 25771;25799;25804 4.1895 0.59683 1 10357000 18452 10291 11623 11629 22079;22080;22081 22079 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 410.2313537597656 3 410.231412 1227.67241 0.082155 3.3702E-05 0.45717 0.00018755 0.53933 0.00022125 410.5659489610893 103.43 0.17686 107.14 107.06 107.24 3.7108 38 27 2 0 0 0 0.46639 1 24487 24487 4.1895 0.31317 1 29937000 18453 10291 11623 11629 22082 22082 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 410.56463623046875 3 410.231412 1227.67241 0.082147 3.3699E-05 -1.5668 -0.00064275 -1.4846 -0.00060905 410.23077627526004 104.2 0.15435 107.9 107.88 108.03 3.6991 29 20 2 0 0 0 0.46639 1 24662 24662 4.1895 0.59683 1 23381000 18454 10291 11623 11629 22083 22083 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 410.2315368652344 3 410.231412 1227.67241 0.096567 3.9615E-05 0.3745 0.00015363 0.47106 0.00019325 410.23154784970467 103.39 0.2352 107.13 106.92 107.16 3.7434 65 36 2 0 0 0 0.46639 1 24409 24409 4.1895 0.072875 1 22582000 18455 10291 11623 11629 22084 22084 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 410.5660705566406 3 410.231412 1227.67241 0.096574 3.9618E-05 0.13671 5.6082E-05 0.23328 9.57E-05 410.2314502844071 104.26 0.26456 107.98 107.93 108.19 3.7192 61 38 2 0 0 0 0.41587 1 24619 24619 7.1017 1.2336 1 15803000 18456 10291 11623 11629 22085 22085 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 410.2312927246094 3 410.231412 1227.67241 0.096577 3.9619E-05 0.34239 0.00014046 0.43896 0.00018008 410.23146175582207 104.53 0.29125 108.25 108.2 108.49 3.7192 65 41 2 0 0 0 0.46639 1 24672 24672 4.1895 0.072875 1 5554500 18457 10291 11623 11629 22086 22086 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 410.231412 1227.67241 0.094685 3.8843E-05 0.21111 8.6604E-05 0.30579 0.00012545 410.5659827977786 103.38 0.03746 107.16 107.13 107.17 3.7788 0.0048381 -0.00056404 NaN 4.1895 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 532950 18458 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 410.231412 1227.67241 -0.41263 -0.00016927 1.1741 0.00048164 0.76144 0.00031236 410.2318730909572 104.69 0.2912 108.22 108.15 108.44 3.5289 -0.15753 0.00024155 NaN 2.086 75 44 3 NaN NaN NaN NaN 0 NaN NaN 0 18841000 18459 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 410.231412 1227.67241 -0.61139 -0.00025081 1.2072 0.00049524 0.59582 0.00024442 410.2318164435802 104.94 0.22535 108.47 108.43 108.65 3.5308 0.10051 0.00028235 NaN 2.086 51 35 2 NaN NaN NaN NaN 0 NaN NaN 0 11592000 18460 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 410.231412 1227.67241 0.082147 3.3699E-05 -1.5668 -0.00064275 -1.4846 -0.00060905 410.23077627526004 104.2 0.15435 107.9 107.88 108.03 3.6991 -0.03982 -0.0011413 NaN 7.1017 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 23381000 18461 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 410.231412 1227.67241 0.082159 3.3704E-05 0.39221 0.0001609 0.47437 0.0001946 410.56599550315116 103.55 0.061714 107.26 107.24 107.3 3.7108 0.028353 -8.1347E-05 NaN 4.1895 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 16531000 18462 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 410.231412 1227.67241 0.082155 3.3702E-05 0.45717 0.00018755 0.53933 0.00022125 410.5659489610893 103.43 0.17686 107.14 107.06 107.24 3.7108 -0.014984 -0.00026121 NaN 4.1895 38 27 2 NaN NaN NaN NaN 0 NaN NaN 0 29937000 18463 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 410.231412 1227.67241 0.082159 3.3704E-05 0.44369 0.00018202 0.52585 0.00021572 410.565866015203 104.7 0.059059 108.39 108.37 108.43 3.6901 0.015424 -0.00065731 NaN 2.086 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3324400 18464 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 410.231412 1227.67241 0.096567 3.9615E-05 0.3745 0.00015363 0.47106 0.00019325 410.23154784970467 103.39 0.2352 107.13 106.92 107.16 3.7434 -0.09563 -0.00010314 NaN 4.1895 65 36 2 NaN NaN NaN NaN 0 NaN NaN 0 22582000 18465 10291 11623 11629 0.0676759703726475 KPRKEQEWK 9 Unmodified _KPRKEQEWK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|33|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 410.231412 1227.67241 0.096559 3.9612E-05 -0.16548 -6.7886E-05 -0.068922 -2.8274E-05 410.23128209853303 103.16 0.032822 106.91 106.89 106.93 3.7434 -0.24424 -0.0010275 NaN 4.1895 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 444270 18466 10291 11623 11629 0.0676759703726475 KPRKHKWTRKL 11 Unmodified _KPRKHKWTRKL_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|141|3|sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|141|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.64593505859375 3 493.3124 1476.91537 0.26932 0.00013286 -0.36496 -0.00018004 -0.095637 -4.7179E-05 493.31238782321606 45.951 0.43894 45.951 45.79 46.229 0 83 46 2 0 0 0 0.6724 1 9356 9356 1.2148 0.76031 1 245150 + 18467 24950 11624 11630 22087 22087 0.19598886552967087 KPRKKIIKIR 10 Unmodified _KPRKKIIKIR_ 0 0 0 L1MEf_dup4648|chr6:156202310-156203766:+|2.1989217437702746|0.009445118278471|7.86|149.0|24|1|sense L1MEf_dup4648|chr6:156202310-156203766:+|2.1989217437702746|0.009445118278471|7.86|149.0|24|1|sense L1MEf_dup4648|chr6:156202310-156203766:+|2.1989217437702746|0.009445118278471|7.86|149.0|24|1|sense MSMS UPN48_class_I_Rep_2 6 427.31390380859375 3 427.306475 1278.89759 NaN NaN NaN NaN NaN NaN NaN 108.09 1 111.77 111.27 112.27 3.6746 0 0 0 0.53105 1 25596 25596 0.13989 0 1 18468 13275 11625 11631 22088 22088 0.269301712980905 KPRNFTVSR 9 Unmodified _KPRNFTVSR_ 0 0 0 L1M4_dup10236|chr9:125782411-125783205:-|1.1298976548792583|0.0109520182722387|6.69|149.0|6|1|sense L1M4_dup10236|chr9:125782411-125783205:-|1.1298976548792583|0.0109520182722387|6.69|149.0|6|1|sense L1M4_dup10236|chr9:125782411-125783205:-|1.1298976548792583|0.0109520182722387|6.69|149.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 553.263916015625 2 552.817264 1103.61998 NaN NaN NaN NaN NaN NaN NaN 13.061 1 16.449 15.949 16.949 3.388 0 0 0 0.39598 1 228 228 1.6526 0 1 18469 8819 11626 11632 22089 22089 0.07231058694333115 KPRPILVY 8 Unmodified _KPRPILVY_ 0 0 0 ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C MSMS UPN46_class_I_Rep_3 1 493.31243896484375 2 493.313295 984.612037 NaN NaN NaN NaN NaN NaN NaN 44.781 1 44.781 44.281 45.281 0 0 0 0 0.40604 1 9050 9050 2.5775 0 1 18470 3036 11627 11633 22090 22090 0.11911531444843604 KPRPPKTIKKC 11 Unmodified _KPRPPKTIKKC_ 0 0 0 REV__ENSG00000088782|ENST00000382388|DEFB127 REV__ENSG00000088782|ENST00000382388|DEFB127 MSMS UPN46_class_I_Rep_3 1 648.4039306640625 2 648.40265 1294.79075 NaN NaN NaN NaN NaN NaN NaN 72.121 1 72.121 71.621 72.621 0 0 0 0 0.38417 1 16653 16653 1.1933 0.66858 1 + 18471 17992 11628 11634 22091 22091 0.15514253021410696 KPRVRWLPW 9 Unmodified _KPRVRWLPW_ 0 0 0 L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|63|3|sense L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|63|3|sense L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|63|3|sense MSMS UPN48_class_I_Rep_2 6 619.369140625 2 619.369467 1236.72438 NaN NaN NaN NaN NaN NaN NaN 89.374 1 93.112 92.612 93.612 3.7379 0 0 0 0.40038 1 21291 21291 0.6015 0.14316 1 18472 10747 11629 11635 22092 22092 0.11548805241682203 KPRYTGNK 8 Unmodified _KPRYTGNK_ 0 0 0 L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|22|1|sense;L1PB1_dup437|chr1:148907075-148908141:-|3.018281352869159|0.1691774515619421|4.16|150.0|21|2|sense L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|22|1|sense L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|22|1|sense MSMS UPN48_class_I_Rep_1 5 482.27203369140625 2 482.272158 962.529764 NaN NaN NaN NaN NaN NaN NaN 89.019 1 92.642 92.142 93.142 3.6229 0 0 0 0.40604 1 21364 21364 2.5775 0 1 18473 15112 11630 11636 22093 22093 0.04700009365888036 KPSAFTETVK 10 Unmodified _KPSAFTETVK_ 0 0 0 REV__ENSG00000174946|ENST00000309180|GPR171 REV__ENSG00000174946|ENST00000309180|GPR171 MULTI-MSMS UPN47_class_I_Rep_3 4 554.3051147460938 2 554.305864 1106.59717 -0.051177 -2.8368E-05 -0.6013 -0.0003333 -0.65248 -0.00036167 554.3054778328765 39.15 0.72532 42.388 41.999 42.724 3.238 74 50 2 0 0 0 0.55949 1 7593 7593 4.1895 1.1943 1 91320 + 18474 20540 11631 11637 22094 22094 0.04813994786195508 KPSHEAASSED 11 Unmodified _KPSHEAASSED_ 0 0 0 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 ENSG00000120500|ENST00000307959|ARR3 MSMS UPN47_class_I_Rep_3 4 579.2544555664062 2 579.257099 1156.49965 NaN NaN NaN NaN NaN NaN NaN 47.265 1 50.509 50.009 51.009 3.2439 0 0 0 0.38417 1 10186 10186 1.1933 0.39971 1 18475 2325 11632 11638 22095 22095 -0.07234438880618654 KPSLLRKAKA 10 Unmodified _KPSLLRKAKA_ 0 0 0 ENST00000453008.2_1_2:88927414-88927579:+|nuORF ENST00000453008.2_1_2:88927414-88927579:+|nuORF ENST00000453008.2_1_2:88927414-88927579:+|nuORF MSMS UPN47_class_I_Rep_2 3 556.3690795898438 2 556.369133 1110.72371 NaN NaN NaN NaN NaN NaN NaN 98.351 1 101.84 101.34 102.34 3.4897 0 0 0 0.53105 1 24119 24119 0.35063 0.35063 1 18476 6822 11633 11639 22096 22096 0.17277965801986284 KPSPLGWVRR 10 Unmodified _KPSPLGWVRR_ 0 0 0 REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF MSMS UPN47_class_I_Rep_3 4 598.3587036132812 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 84.072 1 87.422 86.922 87.922 3.35 0 0 0 0.53105 1 21095 21095 1.3295 0.80477 1 + 18477 21570 11634 11640 22097 22097 0.10899910999410167 KPSPLGWVRR 10 Unmodified _KPSPLGWVRR_ 0 0 0 REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF MSMS UPN48_class_I_Rep_1 5 598.287109375 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 77.584 1 81.106 80.606 81.606 3.5221 0 0 0 0.53105 1 18471 18471 1.3295 0.80477 1 + 18478 21570 11634 11640 22098 22098 0.10899910999410167 KPSPLGWVRR 10 Unmodified _KPSPLGWVRR_ 0 0 0 REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF MSMS UPN48_class_I_Rep_3 7 598.3588256835938 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 82.971 1 86.678 86.178 87.178 3.7066 0 0 0 0.53105 1 19667 19667 1.3295 0.72803 1 + 18479 21570 11634 11640 22099 22099 0.10899910999410167 KPSRRAAIEL 10 Unmodified _KPSRRAAIEL_ 0 0 0 ENSG00000135722|ENST00000258200|FBXL8 ENSG00000135722|ENST00000258200|FBXL8 ENSG00000135722|ENST00000258200|FBXL8 MSMS UPN46_class_I_Rep_3 1 570.84814453125 2 570.846022 1139.67749 NaN NaN NaN NaN NaN NaN NaN 108.75 1 108.75 108.25 109.25 0 0 0 0 0.53105 1 26619 26619 8.1555 0 1 18480 2924 11635 11641 22100 22100 0.11323900899901673 KPSRVENHSY 10 Unmodified _KPSRVENHSY_ 0 0 0 REV__Tigger2a_dup570|chr2:230458083-230458505:-|1.2528705706027663|0.1613741848900043|2.96|151.0|30|3|anti-sense REV__Tigger2a_dup570|chr2:230458083-230458505:-|1.2528705706027663|0.1613741848900043|2.96|151.0|30|3|anti-sense MSMS UPN47_class_I_Rep_3 4 406.1700744628906 3 406.207155 1215.59963 NaN NaN NaN NaN NaN NaN NaN 51.416 1 54.633 54.133 55.133 3.2163 0 0 0 0.53105 1 11441 11441 1.7423 0.54893 1 + 18481 32688 11636 11642 22101 22101 0.0004584324385632499 KPTAPLLSF 9 Unmodified _KPTAPLLSF_ 0 0 0 REV__L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|80|2|anti-sense REV__L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|80|2|anti-sense MSMS UPN46_class_I_Rep_3 1 487.2873840332031 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 37.095 1 37.095 36.595 37.595 0 0 0 0 0.38478 1 6940 6940 4.3292 1.7518 1 + 18482 24216 11637 11643 22102 22102 0.07703832454012627 KPTFKFRKA 9 Unmodified _KPTFKFRKA_ 0 0 0 L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|74|2|sense L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|74|2|sense L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|74|2|sense MSMS UPN47_class_I_Rep_3 4 561.7225341796875 2 561.842751 1121.67095 NaN NaN NaN NaN NaN NaN NaN 75.902 1 79.159 78.659 79.659 3.2573 0 0 0 0.39518 1 18852 18852 1.8442 0 1 18483 14816 11638 11644 22103 22103 0.11498007739169225 KPTIRFRKY 9 Unmodified _KPTIRFRKY_ 0 0 0 L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|139|3|sense L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|139|3|sense L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|139|3|sense MSMS UPN48_class_I_Rep_2 6 604.8685302734375 2 604.866757 1207.71896 NaN NaN NaN NaN NaN NaN NaN 97.107 1 100.89 100.39 101.39 3.779 0 0 0 0.38784 1 23077 23077 3.5965 0.31518 1 18484 14280 11639 11645 22104 22104 0.12341081659224074 KPTKAARQ 8 Unmodified _KPTKAARQ_ 0 0 0 ENSG00000183921|ENST00000602312|SDR42E2 ENSG00000183921|ENST00000602312|SDR42E2 ENSG00000183921|ENST00000602312|SDR42E2 MULTI-MSMS UPN47_class_I_Rep_3 4 450.27447509765625 2 450.274701 898.534849 -0.2022 -9.1044E-05 -0.13349 -6.0109E-05 -0.33569 -0.00015115 450.27459681165465 84.185 1.1377 87.546 87.086 88.224 3.3615 455 142 5 0 0 0 0.82752 1 21218 21218 2.3027 0 1 6870200 18485 5029 11640 11646 22105 22105 0.08152313228504227 KPTKKDTR 8 Unmodified _KPTKKDTR_ 0 0 0 REV__ENST00000503498.1_1_3:129120438-129130339:-|nuORF REV__ENST00000503498.1_1_3:129120438-129130339:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.2933044433594 2 487.293091 972.571629 0.16418 8.0002E-05 -0.01078 -5.2532E-06 0.1534 7.4749E-05 487.2930019254363 81.928 0.45911 85.503 85.326 85.785 3.5753 78 55 2 0 0 0 0.82752 1 19545 19545 2.3027 0 1 108790 + 18486 20458 11641 11647 22106 22106 0.0842456505440623 KPTKTMFDY 9 Unmodified _KPTKTMFDY_ 0 0 0 REV__L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|61|1|sense REV__L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|61|1|sense MSMS UPN48_class_I_Rep_3 7 565.7824096679688 2 565.781167 1129.54778 NaN NaN NaN NaN NaN NaN NaN 20.829 1 24.496 23.996 24.996 3.6667 0 0 0 0.39428 1 1850 1850 2.0598 0 1 + 18487 29779 11642 11648 22107 22107 -0.011810364942675733 KPTKVKKR 8 Unmodified _KPTKVKKR_ 0 0 0 L1PA7_dup106|chr1:55112194-55113128:-|2.1338867491909013|0.1225261759478073|4.12|151.0|24|3|sense L1PA7_dup106|chr1:55112194-55113128:-|2.1338867491909013|0.1225261759478073|4.12|151.0|24|3|sense L1PA7_dup106|chr1:55112194-55113128:-|2.1338867491909013|0.1225261759478073|4.12|151.0|24|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 493.35333251953125 2 492.837468 983.660384 0.16238 8.0027E-05 -1.5386 -0.00075829 -1.3762 -0.00067826 492.83742668068345 108.09 0.10578 111.73 111.64 111.75 3.6313 18 10 2 0 0 0 0.72333 1 26091 26091 2.3027 0.4585 1 757970 18488 14706 11643 11649 22108 22108 0.1679002508474241 KPTLKKPFH 9 Unmodified _KPTLKKPFH_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS UPN47_class_I_Rep_2 3 548.3270263671875 2 548.337301 1094.66005 NaN NaN NaN NaN NaN NaN NaN 111.02 1 114.55 114.05 115.05 3.5271 0 0 0 0.39518 1 27029 27029 1.8442 0 1 + 18489 18606 11644 11650 22109 22109 0.11650605364889088 KPTNSGHYS 9 Unmodified _KPTNSGHYS_ 0 0 0 L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|12|1|sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|12|1|sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 495.73492431640625 2 495.735606 989.456658 NaN NaN NaN NaN NaN NaN NaN 26.436 1 26.436 25.936 26.936 0 0 0 0 0.37476 1 3780 3780 6.7232 1.9672 1 18490 15216 11645 11651 22110 22110 -0.038491641473797245 KPTPKYKAV 9 Unmodified _KPTPKYKAV_ 0 0 0 REV__L1M4_dup1944|chr2:86493279-86494627:-|1.0648980385685625|0.2721828116942406|1.97|151.0|7|1|sense REV__L1M4_dup1944|chr2:86493279-86494627:-|1.0648980385685625|0.2721828116942406|1.97|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 516.3139038085938 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.96 1 111.59 111.09 112.09 3.6355 0 0 0 0.29868 1 26485 26485 10.824 0 1 + 18491 24411 11646 11652 22111 22111 0.10343210236624145 KPTQGPPQAY 10 Unmodified _KPTQGPPQAY_ 0 0 0 REV__L1ME1_dup7346|chr3:195905499-195906779:+|5.3171045478171|0.442350661616108|3.59|151.0|42|3|sense REV__L1ME1_dup7346|chr3:195905499-195906779:+|5.3171045478171|0.442350661616108|3.59|151.0|42|3|sense MSMS UPN47_class_I_Rep_3 4 543.7835693359375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 42.935 1 46.175 45.675 46.675 3.2394 0 0 0 0.53105 1 8860 8860 1.1933 0 1 + 18492 27795 11647 11653 22112 22112 0.01120554954900399 KPTQKNKN 8 Unmodified _KPTQKNKN_ 0 0 0 REV__L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|88|3|sense REV__L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|88|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.27764892578125 2 479.277441 956.540328 0.24703 0.0001184 -0.18119 -8.684E-05 0.065843 3.1557E-05 479.2772475079895 79.584 1.1024 79.584 79.333 80.436 0 201 105 3 0 0 0 0.82752 1 18708 18708 7.2892 1.0834 1 479680 + 18493 28908 11648 11654 22113 22113 0.06031992020314192 KPTRAVNKIH 10 Unmodified _KPTRAVNKIH_ 0 0 0 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MULTI-MSMS UPN46_class_I_Rep_3 1 582.3534545898438 2 582.354014 1162.69348 0.51882 0.00030214 -1.181 -0.00068775 -0.66216 -0.00038561 582.3532166669189 99.429 0.078835 99.429 99.392 99.471 0 17 8 3 0 0 0 0.56118 1 24222 24222 2.9952 1.151 1 180980 18494 1744 11649 11655 22114 22114 0.1186360713677459 KPTRAVNKIH 10 Unmodified _KPTRAVNKIH_ 0 0 0 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MULTI-SECPEP UPN48_class_I_Rep_3 7 582.353515625 2 582.354014 1162.69348 0.49268 0.00028691 -0.94509 -0.00055038 -0.45241 -0.00026346 582.3536548849366 107.35 0.11787 111.03 110.96 111.07 3.6813 14 8 3 0 0 0 0.84575 1 25314 25314 8.7454 2.0222 1 808330 18495 1744 11649 11655 22115 22115 0.1186360713677459 KPTREKKT 8 Unmodified _KPTREKKT_ 0 0 0 REV__L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|28|1|sense REV__L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|28|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.3009948730469 2 494.300916 986.587279 0.41212 0.00020371 -0.31158 -0.00015401 0.10055 4.9701E-05 494.30081214500694 89.02 0.54414 92.472 92.376 92.92 3.4525 122 72 3 0 0 0 0.82752 1 22128 22128 4.3292 0.38484 1 742420 + 18496 25124 11650 11656 22116 22116 0.09344851571461277 KPTREKKT 8 Unmodified _KPTREKKT_ 0 0 0 REV__L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|28|1|sense REV__L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|28|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 494.300916 986.587279 0.30534 0.00015093 -0.1002 -4.953E-05 0.20514 0.0001014 494.3008104337906 92.522 0.13304 92.522 92.415 92.548 0 0.03949 0.00011036 NaN 4.3292 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 403470 + 18497 25124 11650 11656 0.09344851571461277 KPTREKKT 8 Unmodified _KPTREKKT_ 0 0 0 REV__L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|28|1|sense REV__L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|28|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 494.300916 986.587279 0.26223 0.00012962 -0.039188 -1.9371E-05 0.22304 0.00011025 494.3009096042152 89.061 0.1287 92.454 92.417 92.546 3.3931 -0.028626 0.00017068 NaN 4.3292 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 597300 + 18498 25124 11650 11656 0.09344851571461277 KPTRKTAH 8 Unmodified _KPTRKTAH_ 0 0 0 L1ME3_dup2636|chr5:172097340-172097860:-|1.6594071184348536|0.0470958782573726|5.14|151.0|14|3|sense L1ME3_dup2636|chr5:172097340-172097860:-|1.6594071184348536|0.0470958782573726|5.14|151.0|14|3|sense L1ME3_dup2636|chr5:172097340-172097860:-|1.6594071184348536|0.0470958782573726|5.14|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 469.778564453125 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 87.671 1 87.671 87.171 88.171 0 0 0 0 0.4044 1 21020 21020 4.756 0 1 18499 12584 11651 11657 22117 22117 0.07447715602779681 KPTRTPGR 8 Unmodified _KPTRTPGR_ 0 0 0 REV__HERV17-int_dup199|chr3:87940824-87945057:-|2.2819962277081025|0.0575669791136135|5.31|134.0|121|3|sense REV__HERV17-int_dup199|chr3:87940824-87945057:-|2.2819962277081025|0.0575669791136135|5.31|134.0|121|3|sense MSMS UPN48_class_I_Rep_1 5 456.7723388671875 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 80.749 1 84.312 83.812 84.812 3.5624 0 0 0 0.4044 1 19244 19244 4.756 0 1 + 18500 23543 11652 11658 22118 22118 0.07079429085752054 KPTSRPNLNLK 11 Unmodified _KPTSRPNLNLK_ 0 0 0 REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 634.8795776367188 2 634.377686 1266.74082 0.43219 0.00027417 -0.4697 -0.00029796 -0.037506 -2.3793E-05 634.3774103241661 105.43 0.76817 109.06 109.02 109.79 3.6277 202 101 3 0 0 0 0.65559 1 25485 25485 2.7352 2.7352 1 2173500 + 18501 22297 11653 11659 22119 22119 0.11811841617145546 KPTTLGRSSV 10 Unmodified _KPTTLGRSSV_ 0 0 0 REV__ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|37|2|sense REV__ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|37|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 523.3036499023438 2 523.303655 1044.59276 0.066267 3.4678E-05 -0.24882 -0.00013021 -0.18256 -9.5532E-05 523.3035180226237 77.641 0.8301 80.973 80.511 81.341 3.3315 112 83 2 0 0 0 0.84575 1 19287 19287 0.86438 0 1 177760 + 18502 23240 11654 11660 22120 22120 0.07224530363282611 KPTTLGRSSV 10 Unmodified _KPTTLGRSSV_ 0 0 0 REV__ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|37|2|sense REV__ERV24_Prim-int_dup58|chr2:62092468-62094480:-|1.399843637465695|0.0171658912045551|6.35|150.0|37|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 523.3036499023438 2 523.303655 1044.59276 0.35556 0.00018606 -0.41033 -0.00021473 -0.054776 -2.8664E-05 523.3032856266085 77.64 1.2899 80.909 80.506 81.796 3.269 198 138 2 0 0 0 0.84575 1 19350 19350 6.1918 0.89496 1 146820 + 18503 23240 11654 11660 22121 22121 0.07224530363282611 KPVHSTSVY 9 Unmodified _KPVHSTSVY_ 0 0 0 Tigger1_dup5429|chr7:11023847-11025512:+|1.1907299293539932|0.0393868108964633|4.92|151.0|9|1|sense Tigger1_dup5429|chr7:11023847-11025512:+|1.1907299293539932|0.0393868108964633|4.92|151.0|9|1|sense Tigger1_dup5429|chr7:11023847-11025512:+|1.1907299293539932|0.0393868108964633|4.92|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 509.2840881347656 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 39.743 1 43.12 42.62 43.62 3.377 0 0 0 0.26661 1 7840 7840 12.532 0.89125 1 18504 33124 11655 11661 22122 22122 0.021491699262014663 KPVPGCLLLHT 11 Unmodified _KPVPGCLLLHT_ 0 0 0 REV__MER1B_dup3838|chr12:11728296-11728626:+|1.7619005509730654|0.0082488116015622|7.74|151.0|24|3|anti-sense REV__MER1B_dup3838|chr12:11728296-11728626:+|1.7619005509730654|0.0082488116015622|7.74|151.0|24|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.3427734375 2 589.341726 1176.6689 0.58569 0.00034517 1.5685 0.00092438 2.1542 0.0012695 589.3425072775466 89.02 0.044006 92.472 92.462 92.506 3.4525 6 5 2 0 0 0 0.67264 1 22126 22126 1.1933 0.59184 1 94848 + 18505 31136 11656 11662 22123 22123 0.08763210939059718 KPVSLTSNGK 10 Unmodified _KPVSLTSNGK_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MSMS UPN48_class_I_Rep_1 5 515.798583984375 2 515.798206 1029.58186 NaN NaN NaN NaN NaN NaN NaN 28.868 1 32.418 31.918 32.918 3.5499 0 0 0 0.53105 1 3927 3927 5.2969 0 1 + 18506 20261 11657 11663 22124 22124 0.06825127988986424 KPWEWTWHV 9 Unmodified _KPWEWTWHV_ 0 0 0 REV__ENST00000597304.5_1_19:8932200-8932350:-|nuORF REV__ENST00000597304.5_1_19:8932200-8932350:-|nuORF MSMS UPN48_class_I_Rep_2 6 634.8123168945312 2 634.81419 1267.61383 NaN NaN NaN NaN NaN NaN NaN 46.431 1 50.181 49.681 50.681 3.7494 0 0 0 0.39428 1 9072 9072 2.0598 0.21551 1 + 18507 23195 11658 11664 22125 22125 -0.009274595372062322 KPWRQQKD 8 Unmodified _KPWRQQKD_ 0 0 0 L1MC2_dup5068|chr14:95425274-95425781:+|1.3759041923821276|0.0261520121407612|5.72|151.0|15|3|sense L1MC2_dup5068|chr14:95425274-95425781:+|1.3759041923821276|0.0261520121407612|5.72|151.0|15|3|sense L1MC2_dup5068|chr14:95425274-95425781:+|1.3759041923821276|0.0261520121407612|5.72|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 543.2977905273438 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 31.941 1 35.475 34.975 35.975 3.5342 0 0 0 0.40659 1 4791 4791 1.8442 0.19162 1 18508 11268 11659 11665 22126 22126 0.03887083285940207 KPYKITTLKTT 11 Unmodified _KPYKITTLKTT_ 0 0 0 L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|33|1|sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|33|1|sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|33|1|sense MSMS UPN46_class_I_Rep_3 1 647.3512573242188 2 647.39247 1292.77039 NaN NaN NaN NaN NaN NaN NaN 58.573 1 58.573 58.073 59.073 0 0 0 0 0.38417 1 12900 12900 2.7352 0.23671 1 18509 12463 11660 11666 22127 22127 0.13571360842593094 KPYKKVQS 8 Unmodified _KPYKKVQS_ 0 0 0 ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-2|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43 ENSG00000197748|ENST00000357060|CFAP43 ENSG00000197748|ENST00000357060|CFAP43 MULTI-MSMS UPN47_class_I_Rep_1 2 489.2921447753906 2 489.292559 976.570566 -0.29528 -0.00014448 0.19921 9.7472E-05 -0.096075 -4.7009E-05 489.2926057221428 31.569 0.72939 35.298 34.944 35.673 3.7293 93 53 2 0 0 0 0.82752 1 5328 5328 3.5965 0 1 116010 18510 5390 11661 11667 22128 22128 0.0813435068552053 KPYKKVQS 8 Unmodified _KPYKKVQS_ 0 0 0 ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-2|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43 ENSG00000197748|ENST00000357060|CFAP43 ENSG00000197748|ENST00000357060|CFAP43 MULTI-MSMS UPN47_class_I_Rep_3 4 489.29278564453125 2 489.292559 976.570566 -0.41342 -0.00020228 0.19905 9.7395E-05 -0.21437 -0.00010489 489.2925546872438 32.005 0.69214 35.304 35.079 35.771 3.2991 97 52 2 0 0 0 0.82752 1 5566 5566 3.5965 0 1 112200 18511 5390 11661 11667 22129 22129 0.0813435068552053 KQAAPRAQ 8 Unmodified _KQAAPRAQ_ 0 0 0 ENST00000564460.2_1_16:952344-953654:-|nuORF ENST00000564460.2_1_16:952344-953654:-|nuORF ENST00000564460.2_1_16:952344-953654:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.2512512207031 2 435.251226 868.487899 0.14708 6.4018E-05 -0.18098 -7.8772E-05 -0.033898 -1.4754E-05 435.2510662705248 86.739 0.54129 86.739 86.494 87.035 0 144 55 3 0 0 0 0.82752 1 20701 20701 4.756 0.42677 1 2310000 18512 7477 11662 11668 22130 22130 0.048394536773685104 KQAIKDHIKSK 11 Unmodified _KQAIKDHIKSK_ 0 0 0 REV__L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense REV__L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 648.3929443359375 2 648.393336 1294.77212 0.5846 0.00037905 -0.35072 -0.0002274 0.23388 0.00015165 648.3934355040695 100.19 1.1212 103.98 103.61 104.73 3.7942 280 154 3 0 0 0 0.65821 3 24743 24712;24743;24833 2.4985 1.0166 1 523440 + 18513 28620 11663 11669 22131;22132;22133 22132 0.13652414651187428 KQAIKDHIKSK 11 Unmodified _KQAIKDHIKSK_ 0 0 0 REV__L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense REV__L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 648.3936157226562 2 648.393336 1294.77212 0.51518 0.00033404 -0.49775 -0.00032274 0.017426 1.1299E-05 648.3931005066075 100.24 0.56693 103.69 103.36 103.93 3.4483 177 78 3 0 0 0 0.65821 2 24788 24733;24788 2.4985 0 1 533470 + 18514 28620 11663 11669 22134;22135 22135 0.13652414651187428 KQAKERLERQR 11 Unmodified _KQAKERLERQR_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MULTI-MSMS UPN46_class_I_Rep_3 1 481.28363037109375 3 481.283057 1440.82734 0.27014 0.00013001 0.72121 0.00034711 0.99135 0.00047712 481.2833562659456 98.646 0.13623 98.646 98.591 98.728 0 36 16 3 0 0 0 0.68081 1 24019 24019 0.45452 0.046251 1 331610 + 18515 20652 11664 11670 22136 22136 0.1245622117169205 KQAKERLERQR 11 Unmodified _KQAKERLERQR_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MULTI-SECPEP UPN46_class_I_Rep_3 1 481.8255310058594 3 481.283057 1440.82734 0.26982 0.00012986 0.015419 7.4207E-06 0.28524 0.00013728 481.28304781340864 97.62 0.048294 97.62 97.575 97.624 0 8 5 2 0 0 0 22.551 1 23756 23756 1.2148 0.80657 1 107510 + 18516 20652 11664 11670 22137 22137 0.1245622117169205 KQAKERLERQR 11 Unmodified _KQAKERLERQR_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MULTI-MATCH UPN48_class_I_Rep_3 7 3 481.283057 1440.82734 0.22887 0.00011015 0.68858 0.0003314 0.91745 0.00044155 481.2832551161656 93.517 0.19234 97.409 97.312 97.505 3.8914 -0.10597 0.00017429 NaN 1.2148 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 191550 + 18517 20652 11664 11670 0.1245622117169205 KQAKHMKRHF 10 Unmodified _KQAKHMKRHF_ 0 0 0 L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|142|3|sense L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|142|3|sense L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|142|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 438.1333923339844 3 437.580269 1309.71898 0.12796 5.5994E-05 -1.2306 -0.00053848 -1.1026 -0.00048248 437.5797892104362 44.242 0.1322 44.242 44.186 44.318 0 16 11 2 0 0 0 0.84575 1 8915 8915 1.9064 0.57673 1 114540 18518 14912 11665 11671 22138 22138 0.07650758387558199 KQAVFRYLL 9 Unmodified _KQAVFRYLL_ 0 0 0 REV__Tigger3c_dup944|chr6:139155007-139155562:-|1.3775993011783143|0.0089360778925374|7.27|151.0|22|3|sense REV__Tigger3c_dup944|chr6:139155007-139155562:-|1.3775993011783143|0.0089360778925374|7.27|151.0|22|3|sense MSMS UPN48_class_I_Rep_1 5 569.3428955078125 2 569.342584 1136.67061 NaN NaN NaN NaN NaN NaN NaN 74.949 1 78.439 77.939 78.939 3.49 0 0 0 0.39326 1 17734 17734 2.3027 0 1 + 18519 32770 11666 11672 22139 22139 0.10774588019307885 KQAYVAHY 8 Unmodified _KQAYVAHY_ 0 0 0 ENST00000353801.7_1_6:44214871-44214913:+|nuORF ENST00000353801.7_1_6:44214871-44214913:+|nuORF ENST00000353801.7_1_6:44214871-44214913:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 490.7546691894531 2 490.253434 978.492316 -0.28182 -0.00013816 -0.56818 -0.00027855 -0.85 -0.00041671 490.25306649742134 34.636 0.40875 38.322 38.102 38.511 3.6859 57 32 2 0 0 0 0.82752 1 6277 6277 5.2307 0.47466 1 91361 18520 6273 11667 11673 22140 22140 0.002209181002740479 KQCLQWFSES 10 Unmodified _KQCLQWFSES_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|431|3|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|431|3|anti-sense MSMS UPN47_class_I_Rep_3 4 628.29296875 2 628.29243 1254.57031 NaN NaN NaN NaN NaN NaN NaN 61.628 1 64.795 64.295 65.295 3.1667 0 0 0 0.53105 1 14553 14553 3.2813 0 1 + 18521 25098 11668 11674 22141 22141 -0.04679437096660877 KQCTVRRTQ 9 Unmodified _KQCTVRRTQ_ 0 0 0 REV__nc|ENSG00000178031|Q8N6G6-6|ADAMTSL1 REV__nc|ENSG00000178031|Q8N6G6-6|ADAMTSL1 MSMS UPN48_class_I_Rep_3 7 560.3068237304688 2 560.306207 1118.59786 NaN NaN NaN NaN NaN NaN NaN 59.925 1 63.442 62.942 63.942 3.5169 0 0 0 0.39598 1 13122 13122 1.6526 0 1 + 18522 20636 11669 11675 22142 22142 0.043305109542416176 KQCWENWTF 9 Unmodified _KQCWENWTF_ 0 0 0 L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|6|1|sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|6|1|sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 621.2728271484375 2 621.274041 1240.53353 NaN NaN NaN NaN NaN NaN NaN 53.519 1 57.129 56.629 57.629 3.6098 0 0 0 0.39598 1 11225 11225 1.6526 0.17072 1 18523 10232 11670 11676 22143 22143 -0.07711688922563553 KQCYRRYL 8 Unmodified _KQCYRRYL_ 0 0 0 REV__L1MC1_dup12506|chr20:24974899-24977406:+|1.250759439663505|0.186332026958253|2.75|151.0|75|3|sense REV__L1MC1_dup12506|chr20:24974899-24977406:+|1.250759439663505|0.186332026958253|2.75|151.0|75|3|sense MSMS UPN47_class_I_Rep_1 2 565.298828125 2 565.300393 1128.58623 NaN NaN NaN NaN NaN NaN NaN 37.319 1 40.984 40.484 41.484 3.6652 0 0 0 0.40746 1 7067 7067 0.69038 0 1 + 18524 26521 11671 11677 22144 22144 0.027083139309070248 KQDDQPLVDG 10 Unmodified _KQDDQPLVDG_ 0 0 0 REV__ENST00000418609.5_1_4:186508297-186508507:-|nuORF REV__ENST00000418609.5_1_4:186508297-186508507:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 557.7725219726562 2 557.772385 1113.53022 0.41575 0.00023189 0.067474 3.7635E-05 0.48322 0.00026953 557.772275788471 61.277 0.71947 64.659 64.377 65.096 3.3815 106 52 3 0 0 0 0.51021 1 14311 14311 10.8 2.644 1 337470 + 18525 22233 11672 11678 22145 22145 -0.022006604955549847 KQDDQPLVDG 10 Unmodified _KQDDQPLVDG_ 0 0 0 REV__ENST00000418609.5_1_4:186508297-186508507:-|nuORF REV__ENST00000418609.5_1_4:186508297-186508507:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.7717895507812 2 557.772385 1113.53022 0.46006 0.00025661 -0.10586 -5.9046E-05 0.3542 0.00019756 557.7721913811048 61.457 0.80403 64.716 64.479 65.283 3.2594 101 51 3 0 0 0 0.51021 1 14524 14524 10.8 2.644 1 380010 + 18526 22233 11672 11678 22146 22146 -0.022006604955549847 KQDDQPLVDG 10 Unmodified _KQDDQPLVDG_ 0 0 0 REV__ENST00000418609.5_1_4:186508297-186508507:-|nuORF REV__ENST00000418609.5_1_4:186508297-186508507:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 557.772705078125 2 557.772385 1113.53022 0.38851 0.0002167 -0.091012 -5.0764E-05 0.2975 0.00016594 557.7722179592237 61.606 0.71857 64.773 64.452 65.171 3.1667 96 51 2 0 0 0 0.51021 3 14497 14497;14583;14625 10.8 2.644 1 587330 + 18527 22233 11672 11678 22147;22148;22149 22147 -0.022006604955549847 KQDEPIDL 8 Unmodified _KQDEPIDL_ 0 0 0 ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A ENST00000482776.1_1_7:56124009-56126486:+|nuORF ENST00000482776.1_1_7:56124009-56126486:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 479.2477111816406 2 479.248015 956.481476 -0.29069 -0.00013931 -0.11569 -5.5446E-05 -0.40638 -0.00019476 479.2479041965047 38.632 0.62092 42.297 42.054 42.675 3.6652 82 41 3 0 0 0 0.82752 2 7452 7452;7490 18.146 4.2403 1 199450 18528 3442 11673 11679 22150;22151 22150 0.001494709353323742 KQDEPIDL 8 Unmodified _KQDEPIDL_ 0 0 0 ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A ENST00000482776.1_1_7:56124009-56126486:+|nuORF ENST00000482776.1_1_7:56124009-56126486:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 479.2478332519531 2 479.248015 956.481476 -0.23438 -0.00011233 -0.57442 -0.00027529 -0.8088 -0.00038762 479.2477725056068 38.895 0.67863 42.274 42.035 42.713 3.3785 68 39 2 0 0 0 0.82752 1 7630 7630 9.3831 0 1 157530 18529 3442 11673 11679 22152 22152 0.001494709353323742 KQDEPIDL 8 Unmodified _KQDEPIDL_ 0 0 0 ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A ENST00000482776.1_1_7:56124009-56126486:+|nuORF ENST00000482776.1_1_7:56124009-56126486:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 479.24774169921875 2 479.248015 956.481476 -0.41716 -0.00019992 -0.26592 -0.00012744 -0.68308 -0.00032737 479.24782892587126 39.045 0.71382 42.283 41.999 42.713 3.2379 85 49 2 0 0 0 0.82752 3 7673 7673;7716;7757 13.906 0 1 171990 18530 3442 11673 11679 22153;22154;22155 22153 0.001494709353323742 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 552.7628784179688 2 552.762686 1103.51082 -0.19576 -0.00010821 0.45447 0.00025121 0.25871 0.000143 552.7629294562975 13.723 0.42332 13.723 13.581 14.004 0 97 47 3 0 0 0 0.26468 2 442 442;473 16.149 3.6176 1 123470 18531 12706 11674 11680 22156;22157 22156 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7626953125 2 552.762686 1103.51082 -0.098631 -5.452E-05 -0.15821 -8.7454E-05 -0.25684 -0.00014197 552.7625988141347 13.118 0.46779 16.575 16.455 16.923 3.457 86 49 4 0 0 0 0.10568 1 263 263 32.786 11.249 1 199340 18532 12706 11674 11680 22158 22158 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.7626953125 2 552.762686 1103.51082 0.041752 2.3079E-05 -0.40326 -0.00022291 -0.36151 -0.00019983 552.7624908830804 13.217 0.3483 16.605 16.482 16.83 3.388 81 36 3 0 0 0 0.31407 2 257 257;291 13.042 0.51092 1 176150 18533 12706 11674 11680 22159;22160 22159 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.7625122070312 2 552.762686 1103.51082 -0.44528 -0.00024614 -0.085312 -4.7158E-05 -0.5306 -0.00029329 552.7627314371174 12.972 0.4554 16.346 16.098 16.554 3.3734 125 50 4 0 0 0 0.26468 2 195 162;195 16.149 3.6176 1 127100 18534 12706 11674 11680 22161;22162 22162 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.76318359375 2 552.762686 1103.51082 0.60281 0.00033321 -0.52001 -0.00028744 0.0828 4.5769E-05 552.7624179043559 13.107 0.22126 16.762 16.688 16.909 3.6549 62 30 3 0 0 0 0.24936 1 195 195 17.113 4.5813 1 74504 18535 12706 11674 11680 22163 22163 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 552.762686 1103.51082 -0.19576 -0.00010821 0.45447 0.00025121 0.25871 0.000143 552.7629294562975 13.723 0.42332 13.723 13.581 14.004 0 0 0 NaN 16.149 97 47 3 NaN NaN NaN NaN 0 NaN NaN 0 123470 18536 12706 11674 11680 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 552.762686 1103.51082 0.63757 0.00035243 -0.71433 -0.00039485 -0.076753 -4.2426E-05 552.762447089094 13.306 0.28823 16.82 16.734 17.022 3.5133 0.22183 -0.00048122 NaN 32.786 59 39 2 NaN NaN NaN NaN 0 NaN NaN 0 55163 18537 12706 11674 11680 -0.03679571995826336 KQDTHTHTH 9 Unmodified _KQDTHTHTH_ 0 0 0 L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense L1ME3B_dup2806|chr6:2336884-2337211:+|1.6681185685153217|0.0147320963754819|6.82|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 552.762686 1103.51082 0.26053 0.00014401 0.093171 5.1502E-05 0.3537 0.00019551 552.7628267403322 12.947 0.2066 16.479 16.44 16.646 3.5314 -0.11913 0.00041149 NaN 32.786 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 28356 18538 12706 11674 11680 -0.03679571995826336 KQEIFIVW 8 Unmodified _KQEIFIVW_ 0 0 0 REV__MLT1A1_dup5221|chr13:28165642-28166016:-|1.2649482969725645|0.0031716754478388|8.64|151.0|20|2|anti-sense REV__MLT1A1_dup5221|chr13:28165642-28166016:-|1.2649482969725645|0.0031716754478388|8.64|151.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8045043945312 2 531.80276 1061.59097 NaN NaN NaN NaN NaN NaN NaN 70.155 1 70.155 69.655 70.655 0 0 0 0 0.40581 1 16110 16110 2.8892 0.58649 1 + 18539 31610 11675 11681 22164 22164 0.06263521345317713 KQELEVTL 8 Unmodified _KQELEVTL_ 0 0 0 REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 480.2738037109375 2 480.274032 958.533512 NaN NaN NaN NaN NaN NaN NaN 68.664 1 72.028 71.528 72.528 3.3646 0 0 0 0.37552 1 16591 16591 16.149 0 1 + 18540 17264 11676 11682 22165 22165 0.05258634349092972 KQELEVTL 8 Unmodified _KQELEVTL_ 0 0 0 REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 480.2728576660156 2 480.274032 958.533512 NaN NaN NaN NaN NaN NaN NaN 68.841 1 72.206 71.706 72.706 3.3646 0 0 0 0.37552 1 16646 16646 16.149 0 1 + 18541 17264 11676 11682 22166 22166 0.05258634349092972 KQELEVTL 8 Unmodified _KQELEVTL_ 0 0 0 REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 480.2737731933594 2 480.274032 958.533512 0.13249 6.363E-05 -0.47162 -0.0002265 -0.33913 -0.00016287 480.27371391307526 69.027 0.47472 72.303 72.083 72.558 3.2761 50 38 3 0 0 0 0.82752 1 16770 16770 9.3831 0 1 88789 + 18542 17264 11676 11682 22167 22167 0.05258634349092972 KQELEVTL 8 Unmodified _KQELEVTL_ 0 0 0 REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MSMS UPN47_class_I_Rep_3 4 480.27392578125 2 480.274032 958.533512 NaN NaN NaN NaN NaN NaN NaN 69.086 1 72.29 71.79 72.79 3.2044 0 0 0 0.38875 1 16826 16826 12.241 0 1 + 18543 17264 11676 11682 22168 22168 0.05258634349092972 KQELEVTL 8 Unmodified _KQELEVTL_ 0 0 0 REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_3 4 480.27392578125 2 480.274032 958.533512 0.085086 4.0865E-05 -0.37964 -0.00018233 -0.29456 -0.00014147 480.2737690695923 68.957 0.4827 72.155 71.995 72.478 3.1977 46 37 2 0 0 0 0.72333 1 16826 16826 12.241 0 1 104180 + 18544 17264 11676 11682 22169 22169 0.05258634349092972 KQELEVTL 8 Unmodified _KQELEVTL_ 0 0 0 REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant REV__CENPF|p.V2686Gfs*7|1|0.06|ENSG00000117724|chr1:214651783-214651783|T/-|frameshift_variant MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 480.274032 958.533512 0.13249 6.363E-05 -0.47162 -0.0002265 -0.33913 -0.00016287 480.27371391307526 69.027 0.47472 72.303 72.083 72.558 3.2761 0.074222 -3.6304E-05 NaN 12.241 50 38 3 NaN NaN NaN NaN 0 NaN NaN 0 88789 + 18545 17264 11676 11682 0.05258634349092972 KQEPHRTEL 9 Unmodified _KQEPHRTEL_ 0 0 0 REV__ENST00000458594.5_1_22:30197094-30223519:-|nuORF REV__ENST00000458594.5_1_22:30197094-30223519:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 569.3040161132812 2 569.304187 1136.59382 -0.16099 -9.1655E-05 0.46521 0.00026485 0.30421 0.00017319 569.304349026485 31.598 0.61172 34.897 34.631 35.243 3.2991 67 51 2 0 0 0 0.49187 1 5405 5405 1.4819 0.15237 1 60375 + 18546 22418 11677 11683 22170 22170 0.030987447321649597 KQERFKWQ 8 Unmodified _KQERFKWQ_ 0 0 0 REV__ENST00000439687.6_1_6:31608034-31608474:-|nuORF REV__ENST00000439687.6_1_6:31608034-31608474:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 575.3119506835938 2 575.311815 1148.60908 0.40754 0.00023446 0.16783 9.6555E-05 0.57537 0.00033102 575.3116639564272 50.475 0.73434 53.999 53.583 54.317 3.5246 86 49 2 0 0 0 0.82752 1 10316 10316 2.5775 0 1 246790 + 18547 22323 11678 11684 22171 22171 0.04071656320047623 KQEVRRGP 8 Unmodified _KQEVRRGP_ 0 0 0 REV__ENST00000397661.6_1_19:13206376-13206544:+|nuORF REV__ENST00000397661.6_1_19:13206376-13206544:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 485.7701110839844 2 485.283057 968.551562 0.18826 9.1359E-05 3.7499 0.0018198 3.9382 0.0019111 485.28547759741934 34.071 0.054043 37.591 37.547 37.601 3.5201 7 5 2 0 0 0 0.82752 1 5404 5404 2.3027 0 1 18227 + 18548 22131 11679 11685 22172 22172 0.06602814114478406 KQFELMEP 8 Unmodified _KQFELMEP_ 0 0 0 REV__ENST00000546145.1_1_6:155561684-155565944:+|nuORF REV__ENST00000546145.1_1_6:155561684-155565944:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 511.2548828125 2 511.254785 1020.49502 -0.60445 -0.00030903 0.50858 0.00026002 -0.095868 -4.9013E-05 511.2548856525312 13.887 0.46538 17.256 17.147 17.612 3.3697 94 53 2 0 0 0 0.82752 1 438 438 2.0598 0 1 86188 + 18549 19541 11680 11686 22173 22173 -0.014409945570605487 KQFLSFFYY 9 Unmodified _KQFLSFFYY_ 0 0 0 REV__ENSG00000170915|ENST00000442253|PAQR8 REV__ENSG00000170915|ENST00000442253|PAQR8 MSMS UPN47_class_I_Rep_1 2 621.8140258789062 2 621.813325 1241.6121 NaN NaN NaN NaN NaN NaN NaN 62.791 1 66.15 65.65 66.65 3.3595 0 0 0 0.39518 1 14818 14818 1.8442 0.19162 1 + 18550 20388 11681 11687 22174 22174 0.0009548665420879843 KQFNSFYSF 9 Unmodified _KQFNSFYSF_ 0 0 0 REV__L1ME3Cz_dup11934|chr21:33234307-33234451:+|1.7226830151581716|0.0801044207000872|4.43|151.0|4|2|sense REV__L1ME3Cz_dup11934|chr21:33234307-33234451:+|1.7226830151581716|0.0801044207000872|4.43|151.0|4|2|sense MSMS UPN48_class_I_Rep_3 7 584.27685546875 2 584.277106 1166.53966 NaN NaN NaN NaN NaN NaN NaN 63.568 1 67.077 66.577 67.577 3.5091 0 0 0 0.23173 1 14223 14223 14.405 4.3315 1 + 18551 28107 11682 11688 22175 22175 -0.0369484741938777 KQFWLVLFPL 10 Unmodified _KQFWLVLFPL_ 0 0 0 REV__L1MDa_dup3252|chr8:81082425-81083753:-|1.03550425678973|0.0171622024603947|5.91|150.0|81|2|anti-sense REV__L1MDa_dup3252|chr8:81082425-81083753:-|1.03550425678973|0.0171622024603947|5.91|150.0|81|2|anti-sense MSMS UPN48_class_I_Rep_1 5 645.8837890625 2 645.884084 1289.75362 NaN NaN NaN NaN NaN NaN NaN 110.8 1 114.43 113.93 114.93 3.6326 0 0 0 0.53105 1 26884 26884 0.45834 0 1 + 18552 27519 11683 11689 22176 22176 0.12032904747297835 KQFYLKYNG 9 Unmodified _KQFYLKYNG_ 0 0 0 L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|106|3|sense L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|106|3|sense L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|106|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.31103515625 2 580.808574 1159.60259 0.40672 0.00023622 0.028781 1.6716E-05 0.4355 0.00025294 580.8084940370638 45.48 1.313 48.996 48.598 49.911 3.5162 233 92 4 0 0 0 0.48846 1 8981 8981 1.8442 0 1 785200 18553 10058 11684 11690 22177 22177 0.029177183686670105 KQGKKWSLE 9 Unmodified _KQGKKWSLE_ 0 0 0 ENST00000509255.1_1_5:134109490-134113463:+|nuORF;nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 ENST00000509255.1_1_5:134109490-134113463:+|nuORF ENST00000509255.1_1_5:134109490-134113463:+|nuORF MSMS UPN46_class_I_Rep_3 1 552.146728515625 2 552.314023 1102.61349 NaN NaN NaN NaN NaN NaN NaN 38.388 1 38.388 37.888 38.888 0 0 0 0 0.4007 1 7303 7303 0.52476 0 1 18554 3414 11685 11691 22178 22178 0.06629120742968553 KQGNTCRRKPI 11 Unmodified _KQGNTCRRKPI_ 0 0 0 REV__L1PB1_dup11987|chr18:2858936-2860244:-|1.5198360893746596|0.0137676804055303|6.79|149.0|11|1|sense REV__L1PB1_dup11987|chr18:2858936-2860244:-|1.5198360893746596|0.0137676804055303|6.79|149.0|11|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7799072265625 3 434.247067 1299.71937 0.10181 4.4213E-05 0.42134 0.00018297 0.52315 0.00022718 434.247230459844 40.006 0.83313 40.006 39.405 40.238 0 110 84 2 0 0 0 22.551 1 7709 7709 4.7159 0.59929 1 162650 + 18555 30331 11686 11692 22179 22179 0.08150133316780739 KQGTEMQTP 9 Unmodified _KQGTEMQTP_ 0 0 0 HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|38|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|38|1|sense HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|38|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 509.7743225097656 2 510.244949 1018.47534 -0.21 -0.00010715 -2.12 -0.0010817 -2.33 -0.0011889 510.24322357973256 30.127 0.40137 33.872 33.624 34.025 3.7449 34 27 3 0 0 0 0.12157 1 4911 4911 6.2058 0.97511 1 39778 18556 8179 11687 11693 22180 22180 -0.03315370567827358 KQHELRRNEEM 11 Unmodified _KQHELRRNEEM_ 0 0 0 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS UPN48_class_I_Rep_1 5 490.9154052734375 3 490.580775 1468.72049 0.19071 9.356E-05 -0.065942 -3.235E-05 0.12477 6.121E-05 490.9151132063511 37.886 0.34002 41.392 41.121 41.461 3.5052 47 33 2 0 0 0 0.68081 1 6449 6449 0.45452 0 1 107200 + 18557 18136 11688 11694 22181 22181 0.004883028950416701 KQHIHLLV 8 Unmodified _KQHIHLLV_ 0 0 0 REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF MSMS UPN47_class_I_Rep_1 2 494.31097412109375 2 494.308544 986.602535 NaN NaN NaN NaN NaN NaN NaN 69.397 1 72.765 72.265 73.265 3.3678 0 0 0 0.40746 1 16812 16812 0.69038 0 1 + 18558 21973 11689 11695 22182 22182 0.10869763159337253 KQHIHLLV 8 Unmodified _KQHIHLLV_ 0 0 0 REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF MSMS UPN47_class_I_Rep_1 2 494.3108215332031 2 494.308544 986.602535 NaN NaN NaN NaN NaN NaN NaN 69.421 1 72.789 72.289 73.289 3.3678 0 0 0 0.40746 1 16820 16820 0.69038 0 1 + 18559 21973 11689 11695 22183 22183 0.10869763159337253 KQHIHLLV 8 Unmodified _KQHIHLLV_ 0 0 0 REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF MSMS UPN47_class_I_Rep_2 3 494.31097412109375 2 494.308544 986.602535 NaN NaN NaN NaN NaN NaN NaN 69.572 1 72.848 72.348 73.348 3.2761 0 0 0 0.40746 1 16903 16903 0.69038 0 1 + 18560 21973 11689 11695 22184 22184 0.10869763159337253 KQHKKWKKWLY 11 Unmodified _KQHKKWKKWLY_ 0 0 0 REV__ENSG00000232113|ENST00000417563|TEX50 REV__ENSG00000232113|ENST00000417563|TEX50 MULTI-SECPEP UPN46_class_I_Rep_3 1 525.6419067382812 3 524.976906 1571.90889 0.2948 0.00015476 -4.4831 -0.0023535 -4.1883 -0.0021987 525.3089405305295 46.523 0.045715 46.523 46.5 46.545 0 7 4 2 0 0 0 22.551 1 9545 9545 0.50596 0.41111 1 321070 + 18561 21301 11690 11696 22185 22185 0.14580948601610544 KQHPFFLA 8 Unmodified _KQHPFFLA_ 0 0 0 MAST3|p.R923Afs*11|1|0.75|ENSG00000099308|chr19:18145038-18145039|-/C|frameshift_variant;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3 MAST3|p.R923Afs*11|1|0.75|ENSG00000099308|chr19:18145038-18145039|-/C|frameshift_variant MAST3|p.R923Afs*11|1|0.75|ENSG00000099308|chr19:18145038-18145039|-/C|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_3 4 494.71893310546875 2 494.27417 986.533787 0.21742 0.00010746 -4.2793 -0.0021151 -4.0619 -0.0020077 494.2704210127078 54.639 0.058739 57.825 57.805 57.863 3.1856 4 2 2 0 0 0 0.72333 1 12429 12429 2.3027 1.5091 1 28803 18562 1434 11691 11697 22186 22186 0.039980988596198586 KQIFETIYY 9 Unmodified _KQIFETIYY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MSMS UPN46_class_I_Rep_3 1 602.8154296875 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 65.029 1 65.029 64.529 65.529 0 0 0 0 0.25702 1 14679 14679 13.042 3.6593 1 18563 4299 11692 11698 22187 22187 0.023911654460107457 KQIIEKIIE 9 Unmodified _KQIIEKIIE_ 0 0 0 REV__HAL1_dup14375|chr10:21553950-21554319:-|1.0369212129375518|0.0311151059204166|5.06|151.0|13|3|sense REV__HAL1_dup14375|chr10:21553950-21554319:-|1.0369212129375518|0.0311151059204166|5.06|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 557.3486938476562 2 557.347532 1112.68051 NaN NaN NaN NaN NaN NaN NaN 109.35 1 109.35 108.85 109.85 0 0 0 0 0.32573 1 26842 26842 9.3831 0 1 + 18564 23353 11693 11699 22188 22188 0.12867731234041457 KQIKTKTTTI 10 Unmodified _KQIKTKTTTI_ 0 0 0 REV__L1M4c_dup1254|chr6:158576030-158576780:+|1.2236730495223025|0.0350003968843392|5.13|151.0|25|3|sense REV__L1M4c_dup1254|chr6:158576030-158576780:+|1.2236730495223025|0.0350003968843392|5.13|151.0|25|3|sense MSMS UPN48_class_I_Rep_3 7 581.7925415039062 2 581.363713 1160.71287 NaN NaN NaN NaN NaN NaN NaN 69.453 1 72.965 72.465 73.465 3.5128 0 0 0 0.53105 1 16001 16001 1.4819 0.8804 1 + 18565 24570 11694 11700 22189 22189 0.13894518637016517 KQINSQRKC 9 Unmodified _KQINSQRKC_ 0 0 0 REV__L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|20|1|sense REV__L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 552.7988891601562 2 552.800757 1103.58696 NaN NaN NaN NaN NaN NaN NaN 26.343 1 26.343 25.843 26.843 0 0 0 0 0.38073 1 3752 3752 5.2969 0.54088 1 + 18566 26423 11695 11701 22190 22190 0.03931108579968168 KQIQHHIK 8 Unmodified _KQIQHHIK_ 0 0 0 L1PB1_dup10547|chr13:49046857-49049707:-|1.817580182799432|0.0332272061982531|5.77|151.0|6|1|sense L1PB1_dup10547|chr13:49046857-49049707:-|1.817580182799432|0.0332272061982531|5.77|151.0|6|1|sense L1PB1_dup10547|chr13:49046857-49049707:-|1.817580182799432|0.0332272061982531|5.77|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 516.308837890625 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 30.072 1 33.554 33.054 34.054 3.4821 0 0 0 0.40746 1 4905 4905 0.69038 0 1 18567 14995 11696 11702 22191 22191 0.08951977528204225 KQKHTHKRF 9 Unmodified _KQKHTHKRF_ 0 0 0 REV__L1MC5a_dup4467|chr4:105247067-105247703:-|1.0787004660133108|0.0208966407975995|5.69|151.0|36|2|anti-sense REV__L1MC5a_dup4467|chr4:105247067-105247703:-|1.0787004660133108|0.0208966407975995|5.69|151.0|36|2|anti-sense MSMS UPN46_class_I_Rep_3 1 605.3519897460938 2 605.351806 1208.68906 NaN NaN NaN NaN NaN NaN NaN 90.38 1 90.38 89.88 90.88 0 0 0 0 0.4007 1 21794 21794 0.52476 0 1 + 18568 27157 11697 11703 22192 22192 0.09306142713876397 KQKILRQIIK 10 Unmodified _KQKILRQIIK_ 0 0 0 REV__L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|23|1|sense REV__L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|23|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 423.2899169921875 3 423.290602 1266.84998 -0.49792 -0.00021076 -0.3832 -0.00016221 -0.88112 -0.00037297 423.2902900946488 12.588 0.13803 12.588 12.5 12.638 0 19 14 2 0 0 0 0.56433 1 155 155 0.77653 0 1 32048 + 18569 24927 11698 11704 22193 22193 0.22722472307259522 KQKILRQIIK 10 Unmodified _KQKILRQIIK_ 0 0 0 REV__L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|23|1|sense REV__L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|23|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 422.74761962890625 3 423.290602 1266.84998 -0.49792 -0.00021076 -0.3832 -0.00016221 -0.88112 -0.00037297 423.2902900946488 12.588 0.13803 12.588 12.5 12.638 0 19 14 2 0 0 0 0.84575 1 138 138 0.69767 0 1 32048 + 18570 24927 11698 11704 22194 22194 0.22722472307259522 KQKKKIKCRFK 11 Unmodified _KQKKKIKCRFK_ 0 0 0 L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9747314453125 3 478.974508 1433.90169 0.12789 6.1257E-05 0.22126 0.00010598 0.34916 0.00016724 478.9745379909629 42.182 1.1537 45.69 45.229 46.383 3.5079 231 105 3 0 0 0 0.68478 1 7783 7783 0.094841 0.094841 1 374240 18571 12125 11699 11705 22195 22195 0.20209892729485546 KQKKKIKCRFK 11 Unmodified _KQKKKIKCRFK_ 0 0 0 L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.30853271484375 3 478.974508 1433.90169 0.14142 6.7738E-05 0.1693 8.1089E-05 0.31072 0.00014883 478.9745479612606 53.764 0.67603 57.278 56.946 57.622 3.5143 71 49 2 0 0 0 0.68478 1 11324 11324 0.094841 0.094841 1 160110 18572 12125 11699 11705 22196 22196 0.20209892729485546 KQKKKIKCRFK 11 Unmodified _KQKKKIKCRFK_ 0 0 0 L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.9747009277344 3 478.974508 1433.90169 0.13447 6.4407E-05 0.054382 2.6048E-05 0.18885 9.0455E-05 478.9744938500093 42.063 0.8802 45.705 45.241 46.121 3.6415 137 86 2 0 0 0 0.68478 1 7679 7679 0.094841 0.094841 1 363270 18573 12125 11699 11705 22197 22197 0.20209892729485546 KQKKKIKCRFK 11 Unmodified _KQKKKIKCRFK_ 0 0 0 L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.3092041015625 3 478.974508 1433.90169 0.0745 3.5684E-05 0.45438 0.00021763 0.52888 0.00025332 478.9746328798343 53.391 0.61104 56.974 56.767 57.379 3.5836 66 45 2 0 0 0 0.68478 1 11140 11140 0.094841 0.094841 1 130200 18574 12125 11699 11705 22198 22198 0.20209892729485546 KQKKKIKCRFK 11 Unmodified _KQKKKIKCRFK_ 0 0 0 L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 478.974508 1433.90169 -0.25393 -0.00012162 0.75412 0.0003612 0.50019 0.00023958 479.3092114444087 41.75 0.12733 45.429 45.329 45.457 3.6792 -0.13784 0.000917 NaN 0.094841 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 48090 18575 12125 11699 11705 0.20209892729485546 KQKKKIKCRFK 11 Unmodified _KQKKKIKCRFK_ 0 0 0 L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense L1MDa_dup4618|chr10:52711887-52712906:-|1.839124684229213|0.0030342954765216|9.24|145.0|44|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 478.974508 1433.90169 0.30015 0.00014376 0.27073 0.00012967 0.57088 0.00027344 479.30902873507466 53.415 0.32171 57.025 56.922 57.243 3.6098 -0.067364 -6.8043E-06 NaN 0.094841 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 82218 18576 12125 11699 11705 0.20209892729485546 KQKKNKKKQYL 11 Unmodified _KQKKNKKKQYL_ 0 0 0 REV__AluJb_dup100423|chr16:11900880-11901173:+|1.452725556273332|0.1628283650922513|3.16|151.0|1|1|sense REV__AluJb_dup100423|chr16:11900880-11901173:+|1.452725556273332|0.1628283650922513|3.16|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 478.63714599609375 3 478.636549 1432.88782 NaN NaN NaN NaN NaN NaN NaN 66.113 1 69.621 69.121 70.121 3.5077 0 0 0 0.38417 1 14993 14993 0.094841 0 1 + 18577 16908 11700 11706 22199 22199 0.18868938502100718 KQKKTLESV 9 Unmodified _KQKKTLESV_ 0 0 0 REV__L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|36|2|sense REV__L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.821533203125 2 530.821681 1059.62881 0.39781 0.00021117 -0.32477 -0.0001724 0.073036 3.8769E-05 530.8214876873047 73.946 0.83899 77.182 76.623 77.462 3.2363 113 85 2 0 0 0 0.49026 1 18273 18273 1.6526 0 1 157860 + 18578 29358 11701 11707 22200 22200 0.10137987540133508 KQKLRWTE 8 Unmodified _KQKLRWTE_ 0 0 0 L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|66|3|sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|66|3|sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|66|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 544.3130493164062 2 544.81419 1087.61383 0.34672 0.0001889 0.023348 1.2721E-05 0.37007 0.00020162 544.8133316052608 74.627 0.071136 74.627 74.583 74.654 0 9 6 2 0 0 0 0.72333 1 17325 17325 2.3027 0 1 93829 18579 11601 11702 11708 22201 22201 0.07352540462784418 KQKPPRNN 8 Unmodified _KQKPPRNN_ 0 0 0 L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|17|1|sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|17|1|sense L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 491.30902099609375 2 491.283057 980.551562 NaN NaN NaN NaN NaN NaN NaN 112.6 1 116.17 115.67 116.67 3.572 0 0 0 0.40625 1 27761 27761 2.3027 0 1 18580 11924 11703 11709 22202 22202 0.06050814114462355 KQKQKEVHIK 10 Unmodified _KQKQKEVHIK_ 0 0 0 REV__L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|56|2|sense REV__L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 633.8889770507812 2 633.388054 1264.76155 0.49536 0.00031376 -1.2414 -0.0007863 -0.74606 -0.00047254 633.3871222206097 85.995 0.52337 89.701 89.362 89.885 3.7058 80 55 2 0 0 0 0.55583 1 20479 20479 4.897 1.3005 1 146660 + 18581 30340 11704 11710 22203 22203 0.13976431996798055 KQKRFPHRQPL 11 Unmodified _KQKRFPHRQPL_ 0 0 0 ENST00000486101.1_1_17:73894933-73895551:-|nuORF;nc|ENSG00000204316|Q96DV4-2|MRPL38;ENSG00000204316|ENST00000309352|MRPL38 ENST00000486101.1_1_17:73894933-73895551:-|nuORF ENST00000486101.1_1_17:73894933-73895551:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 479.2953186035156 3 478.952872 1433.83679 -0.38403 -0.00018393 0.30063 0.00014399 -0.083403 -3.9946E-05 478.9532301328266 13.636 0.028983 17.093 17.069 17.098 3.457 4 2 2 0 0 0 22.551 1 376 376 0.094841 0 1 13069 18582 5518 11705 11711 22204 22204 0.13722034247894044 KQKRFPHRQPL 11 Unmodified _KQKRFPHRQPL_ 0 0 0 ENST00000486101.1_1_17:73894933-73895551:-|nuORF;nc|ENSG00000204316|Q96DV4-2|MRPL38;ENSG00000204316|ENST00000309352|MRPL38 ENST00000486101.1_1_17:73894933-73895551:-|nuORF ENST00000486101.1_1_17:73894933-73895551:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 478.952872 1433.83679 -0.80548 -0.00038579 -0.30456 -0.00014587 -1.11 -0.00053166 479.28683814392747 13.615 0.058225 16.989 16.943 17.001 3.3734 -0.052327 -0.00036641 NaN 0.094841 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 24711 18583 5518 11705 11711 0.13722034247894044 KQKRIILP 8 Unmodified _KQKRIILP_ 0 0 0 L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense MSMS UPN46_class_I_Rep_3 1 498.3399658203125 2 498.339844 994.665135 NaN NaN NaN NaN NaN NaN NaN 34.949 1 34.949 34.449 35.449 0 0 0 0 0.40746 1 6303 6303 0.69038 0 1 18584 9270 11706 11712 22205 22205 0.16758909227519325 KQKRKLRGFI 10 Unmodified _KQKRKLRGFI_ 0 0 0 L1MDa_dup5035|chr12:10842313-10843688:-|1.322244843353653|0.0192167763643121|6.1|150.0|84|2|anti-sense L1MDa_dup5035|chr12:10842313-10843688:-|1.322244843353653|0.0192167763643121|6.1|150.0|84|2|anti-sense L1MDa_dup5035|chr12:10842313-10843688:-|1.322244843353653|0.0192167763643121|6.1|150.0|84|2|anti-sense MSMS UPN46_class_I_Rep_3 1 637.413818359375 2 637.414406 1272.81426 NaN NaN NaN NaN NaN NaN NaN 78.598 1 78.598 78.098 79.098 0 0 0 0 0.53105 1 18416 18416 0.40072 0.050084 1 18585 12131 11707 11713 22206 22206 0.18876434850267287 KQKRLIDY 8 Unmodified _KQKRLIDY_ 0 0 0 REV__HERVL-int_dup373|chr3:17591266-17593200:+|2.843895892111384|0.0234998968765916|6.92|151.0|116|3|anti-sense REV__HERVL-int_dup373|chr3:17591266-17593200:+|2.843895892111384|0.0234998968765916|6.92|151.0|116|3|anti-sense MSMS UPN46_class_I_Rep_3 1 532.3165893554688 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 112.65 1 112.65 112.15 113.15 0 0 0 0 0.40746 1 27816 27816 0.69038 0 1 + 18586 23884 11708 11714 22207 22207 0.08977424605586748 KQKRRRRKHR 10 Unmodified _KQKRRRRKHR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 484.30023193359375 3 483.646776 1447.9185 0.28637 0.0001385 -0.75978 -0.00036746 -0.47341 -0.00022896 483.64631296789963 54.572 0.44339 57.89 57.766 58.21 3.3187 27 20 2 0 0 0 0.84575 1 12444 12444 0.13989 0.04505 1 82500 + 18587 19903 11709 11715 22208 22208 0.21245574450313143 KQKSLKIIIHR 11 Unmodified _KQKSLKIIIHR_ 0 0 0 REV__L1M4c_dup1143|chr6:20904815-20906451:+|1.4573152650334746|0.0242002070114369|5.91|151.0|23|2|sense REV__L1M4c_dup1143|chr6:20904815-20906451:+|1.4573152650334746|0.0242002070114369|5.91|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 455.3020935058594 3 455.301389 1362.88234 0.089913 4.0937E-05 1.2339 0.00056179 1.3238 0.00060273 455.3018604924767 41.96 0.17054 45.606 45.485 45.655 3.6458 23 16 2 0 0 0 0.68132 1 7631 7631 0.40827 0.078994 1 166520 + 18588 24568 11710 11716 22209 22209 0.2154125971026133 KQKTHVHI 8 Unmodified _KQKTHVHI_ 0 0 0 nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4 nc|ENSG00000136111|O60343-2|TBC1D4 nc|ENSG00000136111|O60343-2|TBC1D4 MSMS UPN47_class_I_Rep_1 2 495.7962646484375 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 69.176 1 72.544 72.044 73.044 3.3678 0 0 0 0.40738 1 16747 16747 0.79363 0 1 18589 2949 11711 11717 22210 22210 0.08184288636891779 KQKVIDEKYI 10 Unmodified _KQKVIDEKYI_ 0 0 0 REV__L1MEi_dup469|chr2:39049217-39049684:-|1.5699744098656834|0.0587884460656167|4.74|151.0|16|3|sense REV__L1MEi_dup469|chr2:39049217-39049684:-|1.5699744098656834|0.0587884460656167|4.74|151.0|16|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 421.915283203125 3 421.915089 1262.72344 -0.085647 -3.6136E-05 0.4668 0.00019695 0.38115 0.00016081 421.91546986976607 38.731 1.0222 42.236 41.693 42.715 3.5048 161 86 2 0 0 0 0.56107 1 6670 6670 3.0723 0 1 365970 + 18590 28807 11712 11718 22211 22211 0.10258501291491484 KQLAIYKDK 9 Unmodified _KQLAIYKDK_ 0 0 0 REV__L1MB1_dup4979|chr14:39411822-39412684:-|1.639260122944971|0.0520473464709028|4.98|151.0|9|2|sense REV__L1MB1_dup4979|chr14:39411822-39412684:-|1.639260122944971|0.0520473464709028|4.98|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 553.829833984375 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.792 1 83.148 82.648 83.648 3.3554 0 0 0 0.39518 1 19875 19875 1.8442 0 1 + 18591 25675 11713 11719 22212 22212 0.10094577919790026 KQLATKAAR 9 Unmodified _KQLATKAAR_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000273983|ENST00000614378|H3C8;ENSG00000277775|ENST00000618052|H3C7;ENSG00000197409|ENST00000356476|H3C4;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENST00000586518.1_1_17:73775126-73775255:-|nuORF ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN46_class_I_Rep_3 1 493.80865478515625 2 493.808908 985.603263 -0.30097 -0.00014862 -0.056259 -2.7781E-05 -0.35722 -0.0001764 493.808795826903 12.805 0.33361 12.805 12.731 13.064 0 47 27 2 0 0 0 0.22932 1 206 206 18.373 8.99 1 134890 18592 2758 11714 11720 22213 22213 0.10988557808377664 KQLEFQLLT 9 Unmodified _KQLEFQLLT_ 0 0 0 HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|57|2|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|57|2|sense HERVH-int_dup2097|chr5:76881180-76885610:-|17.868929938460006|0.0260586193187637|9.42|150.0|57|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 560.3248291015625 2 560.324057 1118.63356 0.41352 0.00023171 0.15822 8.8654E-05 0.57174 0.00032036 560.3241517433438 63.653 0.34414 66.909 66.715 67.059 3.2556 43 29 2 0 0 0 0.12408 1 15076 15076 2.9952 0 1 123120 18593 8137 11715 11721 22214 22214 0.07898871682891695 KQLELEAEDE 10 Unmodified _KQLELEAEDE_ 0 0 0 REV__ENSG00000175467|ENST00000312397|SART1 REV__ENSG00000175467|ENST00000312397|SART1 MULTI-SECPEP UPN47_class_I_Rep_3 4 601.7754516601562 2 602.290608 1202.56666 0.48584 0.00029262 2.1644 0.0013036 2.6503 0.0015962 602.7946967524348 53.493 0.061764 56.688 56.639 56.701 3.1948 4 2 2 0 0 0 0.84575 1 12061 12061 3.2813 0 1 36387 + 18594 20556 11716 11722 22215 22215 -0.026518283895029526 KQLELEAEDE 10 Unmodified _KQLELEAEDE_ 0 0 0 REV__ENSG00000175467|ENST00000312397|SART1 REV__ENSG00000175467|ENST00000312397|SART1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 602.290608 1202.56666 0.32447 0.00019543 0.76196 0.00045892 1.0864 0.00065435 602.2905693637038 52.776 0.21448 56.334 56.23 56.444 3.5585 -0.177 -0.00015544 NaN 3.2813 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 78007 + 18595 20556 11716 11722 -0.026518283895029526 KQLFCKLLFV 10 Unmodified _KQLFCKLLFV_ 0 0 0 REV__PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|38|3|sense REV__PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|38|3|sense MSMS UPN47_class_I_Rep_1 2 619.8695678710938 2 619.87012 1237.72569 NaN NaN NaN NaN NaN NaN NaN 86.974 1 90.611 90.111 91.111 3.6372 0 0 0 0.53105 1 21726 21726 3.5965 0 1 + 18596 32168 11717 11723 22216 22216 0.11633258495567134 KQLFCKLLFV 10 Unmodified _KQLFCKLLFV_ 0 0 0 REV__PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|38|3|sense REV__PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|38|3|sense MSMS UPN48_class_I_Rep_1 5 619.8698120117188 2 619.87012 1237.72569 NaN NaN NaN NaN NaN NaN NaN 86.957 1 90.57 90.07 91.07 3.613 0 0 0 0.53105 1 20834 20834 3.5965 0 1 + 18597 32168 11717 11723 22217 22217 0.11633258495567134 KQLKRLLKIQ 10 Unmodified _KQLKRLLKIQ_ 0 0 0 REV__ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|21|intron REV__ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|21|intron MULTI-MSMS UPN46_class_I_Rep_3 1 634.4324951171875 2 634.432264 1266.84998 0.11962 7.5892E-05 -0.3203 -0.00020321 -0.20068 -0.00012732 634.4322977079585 12.162 0.11199 12.162 12.101 12.213 0 20 11 2 0 0 0 0.56523 1 40 40 0.40072 0 1 30140 + 18598 18788 11718 11724 22218 22218 0.22722472307259522 KQLRIPKRQC 10 Unmodified _KQLRIPKRQC_ 0 0 0 REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|5|1|sense REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 635.3838500976562 2 635.382249 1268.74994 NaN NaN NaN NaN NaN NaN NaN 71.321 1 74.871 74.371 75.371 3.5505 0 0 0 0.53105 1 16632 16632 0.40072 0.050084 1 + 18599 24813 11719 11725 22219 22219 0.12631911701828358 KQLRNWKKY 9 Unmodified _KQLRNWKKY_ 0 0 0 L1MEc_dup983|chr1:148423179-148423691:-|3.2617354683928883|0.2223587573715792|3.87|151.0|12|3|sense L1MEc_dup983|chr1:148423179-148423691:-|3.2617354683928883|0.2223587573715792|3.87|151.0|12|3|sense L1MEc_dup983|chr1:148423179-148423691:-|3.2617354683928883|0.2223587573715792|3.87|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 421.91534423828125 3 421.915535 1262.72478 0.042056 1.7744E-05 -0.41317 -0.00017432 -0.37112 -0.00015658 421.91540663942044 38.242 1.0885 41.959 41.468 42.557 3.7164 188 107 3 0 0 0 0.48007 1 6733 6733 2.7352 0 1 359370 18600 13156 11720 11726 22220 22220 0.10392180170879328 KQLRSLKERK 10 Unmodified _KQLRSLKERK_ 0 0 0 REV__LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|97|3|anti-sense REV__LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|97|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 643.4067993164062 2 643.406778 1284.799 0.6416 0.00041281 -0.65805 -0.00042339 -0.016445 -1.0581E-05 643.4065151832054 98.168 0.083527 102.07 102.04 102.13 3.9022 14 6 3 0 0 0 0.52562 1 23265 23265 8.7454 0 1 1565500 + 18601 30767 11721 11727 22221 22221 0.16799523262397997 KQLVGILYVIP 11 Unmodified _KQLVGILYVIP_ 0 0 0 REV__L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|69|3|sense REV__L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|69|3|sense MSMS UPN48_class_I_Rep_2 6 621.8945922851562 2 621.894649 1241.77475 NaN NaN NaN NaN NaN NaN NaN 96.347 1 100.13 99.627 100.63 3.7804 0 0 0 0.38417 1 22886 22886 1.4819 0.28856 1 + 18602 24437 11722 11728 22222 22222 0.1635287005617556 KQLWRWLRFKQ 11 Unmodified _KQLWRWLRFKQ_ 0 0 0 REV__nc|ENSG00000177054|Q8IUH4-2|ZDHHC13 REV__nc|ENSG00000177054|Q8IUH4-2|ZDHHC13 MULTI-SECPEP UPN48_class_I_Rep_2 6 529.9779663085938 3 530.312288 1587.91504 0.44095 0.00023384 -0.61295 -0.00032506 -0.172 -9.1214E-05 530.3120060519922 28.817 0.18231 32.448 32.35 32.532 3.6311 23 19 2 0 0 0 22.551 1 4004 4004 0 0 1 86310 + 18603 20609 11723 11729 22223 22223 0.14459466833091028 KQMEQISQF 9 Oxidation (M) _KQM(Oxidation (M))EQISQF_ KQM(1)EQISQF KQM(79)EQISQF 0 0 1 ENSG00000158710|ENST00000368097|TAGLN2;ENSG00000144834|ENST00000478951|TAGLN3;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-MSMS UPN46_class_I_Rep_3 1 577.779296875 2 577.779156 1153.54376 0.36863 0.00021299 -0.08692 -5.022E-05 0.28171 0.00016277 577.7790436313553 35.718 0.9244 35.718 35.422 36.346 0 142 68 3 0 0 0 0.0052635 3 6535 6535;6572;6613 79.427 37.471 1 405700 18604 3376 11724 11730 22224;22225;22226 22224 109 -0.026871259879726495 KQNDTKVLR 9 Unmodified _KQNDTKVLR_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MSMS UPN46_class_I_Rep_3 1 551.3216552734375 2 551.32238 1100.63021 NaN NaN NaN NaN NaN NaN NaN 13.933 1 13.933 13.433 14.433 0 0 0 0 0.3967 1 507 507 1.4819 0.79152 1 18605 4418 11725 11731 22227 22227 0.08391621628902612 KQNQPQKPH 9 Unmodified _KQNQPQKPH_ 0 0 0 L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|10|1|sense L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|10|1|sense L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 552.7991333007812 2 552.799072 1103.58359 NaN NaN NaN NaN NaN NaN NaN 26.452 1 26.452 25.952 26.952 0 0 0 0 0.39518 1 3784 3784 1.8442 0.36234 1 18606 14643 11726 11732 22228 22228 0.03594181797620877 KQNSIDCFW 9 Unmodified _KQNSIDCFW_ 0 0 0 REV__L1M4c_dup2528|chr11:67186903-67187525:+|2.473869917667585|0.0463097797448805|5.74|151.0|15|3|sense REV__L1M4c_dup2528|chr11:67186903-67187525:+|2.473869917667585|0.0463097797448805|5.74|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 570.7601318359375 2 570.760766 1139.50698 NaN NaN NaN NaN NaN NaN NaN 115.1 1 118.73 118.23 119.23 3.6282 0 0 0 0.39518 1 27995 27995 1.8442 1.0506 1 + 18607 24589 11727 11733 22229 22229 -0.05719377813898063 KQNSSLVLSI 10 Unmodified _KQNSSLVLSI_ 0 0 0 REV__nc|ENSG00000162711|Q96P20-2|NLRP3 REV__nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS UPN48_class_I_Rep_2 6 544.81689453125 2 544.819138 1087.62372 NaN NaN NaN NaN NaN NaN NaN 48.093 1 51.829 51.329 52.329 3.7361 0 0 0 0.53105 1 9571 9571 1.4819 0.15237 1 + 18608 17419 11728 11734 22230 22230 0.08341683677531364 KQNVKRLKRKH 11 Unmodified _KQNVKRLKRKH_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.79791259765625 3 478.975788 1433.90553 0.22834 0.00010937 -2.9568 -0.0014162 -2.7284 -0.0013069 479.30843433277374 62.187 0.098873 65.697 65.616 65.715 3.5104 10 8 2 0 0 0 22.551 1 13804 13804 0.45452 0.35968 1 128850 18609 12815 11729 11735 22231 22231 0.2059369854760007 KQPEDYFYL 9 Unmodified _KQPEDYFYL_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS UPN48_class_I_Rep_2 6 601.7897338867188 2 601.790047 1201.56554 0.54823 0.00032992 -0.77229 -0.00046476 -0.22406 -0.00013484 601.7893913737418 61.18 0.46898 64.659 64.418 64.887 3.4785 69 39 2 0 0 0 0.32682 1 13527 13527 12.241 2.8932 1 196020 18610 1436 11730 11736 22232 22232 -0.02717997967761221 KQPEDYFYL 9 Unmodified _KQPEDYFYL_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS UPN48_class_I_Rep_3 7 601.7903442382812 2 601.790047 1201.56554 0.53956 0.0003247 -0.62492 -0.00037607 -0.085367 -5.1373E-05 601.7893941608374 61.069 0.53788 64.582 64.293 64.831 3.5129 92 45 3 0 0 0 0.17897 2 13460 13423;13460 22.736 5.8328 1 182520 18611 1436 11730 11736 22233;22234 22234 -0.02717997967761221 KQPKEWEKM 9 Unmodified _KQPKEWEKM_ 0 0 0 L1PA16_dup4379|chr5:39172464-39174294:-|1.7718282625626998|0.0520169890088275|5.09|151.0|52|3|sense L1PA16_dup4379|chr5:39172464-39174294:-|1.7718282625626998|0.0520169890088275|5.09|151.0|52|3|sense L1PA16_dup4379|chr5:39172464-39174294:-|1.7718282625626998|0.0520169890088275|5.09|151.0|52|3|sense MSMS UPN47_class_I_Rep_1 2 401.87762451171875 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 14.724 1 18.199 17.699 18.699 3.475 0 0 0 0.40098 1 635 635 0.20686 0.047535 1 18612 14086 11731 11737 22235 22235 0.018577436626628696 KQPKRRPI 8 Unmodified _KQPKRRPI_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|14|intron;nc|ENSG00000066279|Q8IZT6-2|ASPM ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MSMS UPN46_class_I_Rep_3 1 511.7474365234375 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 113.37 1 113.37 112.87 113.87 0 0 0 0 0.40746 1 28001 28001 0.69038 0 1 18613 1018 11732 11738 22236 22236 0.14092256799222014 KQPPLASH 8 Unmodified _KQPPLASH_ 0 0 0 REV__L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|10|2|sense REV__L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 439.2496337890625 2 439.248152 876.481751 NaN NaN NaN NaN NaN NaN NaN 107.58 1 111.26 110.76 111.76 3.6724 0 0 0 0.40404 1 26360 26360 5.2307 0 1 + 18614 24330 11733 11739 22237 22237 0.038569354458559246 KQPQIYFHF 9 Unmodified _KQPQIYFHF_ 0 0 0 L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|38|1|anti-sense L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|38|1|anti-sense L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_1 5 604.3171997070312 2 604.316566 1206.61858 NaN NaN NaN NaN NaN NaN NaN 35.206 1 38.72 38.22 39.22 3.5144 0 0 0 0.40038 1 5729 5729 0.6015 0 1 18615 10717 11734 11740 22238 22238 0.023534246055533004 KQPTPFQLK 9 Unmodified _KQPTPFQLK_ 0 0 0 ENST00000463088.5_1_6:41039005-41040205:-|nuORF ENST00000463088.5_1_6:41039005-41040205:-|nuORF ENST00000463088.5_1_6:41039005-41040205:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.8187866210938 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 43.352 1 47.114 46.614 47.614 3.7617 0 0 0 0.38784 1 8136 8136 3.5965 1.2938 1 18616 6874 11735 11741 22239 22239 0.08394308748302137 KQPTPPSEAA 10 Unmodified _KQPTPPSEAA_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MSMS UPN47_class_I_Rep_3 4 513.2685546875 2 513.266739 1024.51892 NaN NaN NaN NaN NaN NaN NaN 81.317 1 84.64 84.14 85.14 3.3231 0 0 0 0.53105 1 20348 20348 5.7319 0.97584 1 18617 2552 11736 11742 22240 22240 0.007645622009476938 KQPWRPRF 8 Unmodified _KQPWRPRF_ 0 0 0 MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|29|2|anti-sense MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|29|2|anti-sense MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 558.2637939453125 2 557.817067 1113.61958 NaN NaN NaN NaN NaN NaN NaN 24.323 1 27.674 27.174 28.174 3.3509 0 0 0 0.40746 1 3245 3245 0.69038 0 1 18618 16021 11737 11743 22241 22241 0.06731683765110574 KQPWRPRF 8 Unmodified _KQPWRPRF_ 0 0 0 MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|29|2|anti-sense MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|29|2|anti-sense MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|29|2|anti-sense MSMS UPN48_class_I_Rep_3 7 557.816162109375 2 557.817067 1113.61958 NaN NaN NaN NaN NaN NaN NaN 25.469 1 29.238 28.738 29.738 3.769 0 0 0 0.40746 1 3101 3101 0.69038 0 1 18619 16021 11737 11743 22242 22242 0.06731683765110574 KQQEIVVSR 9 Unmodified _KQQEIVVSR_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN46_class_I_Rep_3 1 543.8173828125 2 543.81693 1085.61931 -0.027664 -1.5044E-05 0.071674 3.8978E-05 0.044011 2.3934E-05 543.816969702341 23.566 0.81752 23.566 23.169 23.986 0 137 82 2 0 0 0 0.11648 4 2933 2897;2933;2971;3006 30.703 10.289 1 113060 18620 5270 11738 11744 22243;22244;22245;22246 22244 0.07992219254606425 KQQHRRIL 8 Unmodified _KQQHRRIL_ 0 0 0 REV__ENST00000367450.7_1_1:192998338-192998428:-|nuORF REV__ENST00000367450.7_1_1:192998338-192998428:-|nuORF MSMS UPN46_class_I_Rep_3 1 539.8328857421875 2 539.833249 1077.65194 NaN NaN NaN NaN NaN NaN NaN 89.808 1 89.808 89.308 90.308 0 0 0 0 0.40746 1 21625 21625 0.69038 0 1 + 18621 21929 11739 11745 22247 22247 0.11622471168129778 KQQIRNYRRKK 11 Unmodified _KQQIRNYRRKK_ 0 0 0 L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|14|1|sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|14|1|sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|14|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 505.97442626953125 3 506.642697 1516.90626 0.27146 0.00013753 0.68303 0.00034605 0.95449 0.00048359 506.6430007674642 107.22 0.12279 110.91 110.84 110.96 3.6899 18 10 2 0 0 0 22.551 1 25270 25270 0.50596 0.41111 1 879900 18622 12367 11740 11746 22248 22248 0.16848493196607706 KQQLLQYRS 9 Unmodified _KQQLLQYRS_ 0 0 0 REV__MLT1H-int_dup562|chr11:43460027-43460558:-|3.844397186279256|0.0743674477094958|5.69|151.0|6|1|sense REV__MLT1H-int_dup562|chr11:43460027-43460558:-|3.844397186279256|0.0743674477094958|5.69|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 582.327392578125 2 582.330205 1162.64586 NaN NaN NaN NaN NaN NaN NaN 61.083 1 64.465 63.965 64.965 3.3815 0 0 0 0.38639 1 14298 14298 3.9444 1.8846 1 + 18623 31753 11741 11747 22249 22249 0.071039081459503 KQQQKKAK 8 Unmodified _KQQQKKAK_ 0 0 0 REV__HAL1_dup20357|chr17:36968928-36969664:-|1.002403934855319|0.0309470431976179|5.02|151.0|8|1|sense REV__HAL1_dup20357|chr17:36968928-36969664:-|1.002403934855319|0.0309470431976179|5.02|151.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.8087463378906 2 493.808908 985.603263 -0.30097 -0.00014862 -0.056259 -2.7781E-05 -0.35722 -0.0001764 493.808795826903 12.805 0.33361 12.805 12.731 13.064 0 47 27 2 0 0 0 0.82752 1 241 241 5.2307 0 1 134890 + 18624 23394 11742 11748 22250 22250 0.10988557808377664 KQQYKMMR 8 Unmodified _KQQYKMMR_ 0 0 0 REV__ENST00000301573.13_1_17:72691237-72694758:-|nuORF REV__ENST00000301573.13_1_17:72691237-72694758:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.7897338867188 2 556.788804 1111.56305 NaN NaN NaN NaN NaN NaN NaN 31.824 1 35.123 34.623 35.623 3.2991 0 0 0 0.40604 1 5474 5474 2.5775 0.27475 1 + 18625 20872 11743 11749 22251 22251 0.011735518219438745 KQQYLENLI 9 Unmodified _KQQYLENLI_ 0 0 0 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 MSMS UPN48_class_I_Rep_3 7 574.819580078125 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 69.682 1 73.195 72.695 73.695 3.5128 0 0 0 0.34878 1 16071 16071 8.1555 0.54658 1 + 18626 19734 11744 11750 22252 22252 0.055816836775193224 KQQYYYAHK 9 Unmodified _KQQYYYAHK_ 0 0 0 REV__ENST00000216252.3_1_22:41856283-41856487:-|nuORF REV__ENST00000216252.3_1_22:41856283-41856487:-|nuORF MSMS UPN48_class_I_Rep_1 5 614.8082885742188 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 33.948 1 37.468 36.968 37.968 3.5201 0 0 0 0.39428 1 5365 5365 2.0598 0 1 + 18627 21472 11745 11751 22253 22253 -0.0010406726246401377 KQRAWRALPR 10 Unmodified _KQRAWRALPR_ 0 0 0 REV__ENST00000537045.5_1_22:19023939-19024314:-|nuORF REV__ENST00000537045.5_1_22:19023939-19024314:-|nuORF MSMS UPN48_class_I_Rep_3 7 641.384765625 2 641.38618 1280.75781 NaN NaN NaN NaN NaN NaN NaN 93.957 1 97.848 97.348 98.348 3.8914 0 0 0 0.53105 1 22272 22272 1.4819 0.15237 1 + 18628 22896 11746 11752 22254 22254 0.12865807013577069 KQRCDISKSL 10 Unmodified _KQRCDISKSL_ 0 0 0 L1PA15-16_dup603|chr7:134092946-134096231:+|2.106526107565021|0.4074861915124197|2.37|151.0|45|2|sense L1PA15-16_dup603|chr7:134092946-134096231:+|2.106526107565021|0.4074861915124197|2.37|151.0|45|2|sense L1PA15-16_dup603|chr7:134092946-134096231:+|2.106526107565021|0.4074861915124197|2.37|151.0|45|2|sense MSMS UPN48_class_I_Rep_3 7 589.3189697265625 2 589.321522 1176.62849 NaN NaN NaN NaN NaN NaN NaN 40.631 1 44.282 43.782 44.782 3.6509 0 0 0 0.53105 1 7249 7249 1.3295 0.63916 1 18629 14004 11747 11753 22255 22255 0.04724244548629031 KQRKKYHLKRM 11 Unmodified _KQRKKYHLKRM_ 0 0 0 L1MD3_dup2903|chrX:73977346-73977688:-|1.331920449588219|0.0483786025415885|4.78|151.0|7|2|sense L1MD3_dup2903|chrX:73977346-73977688:-|1.331920449588219|0.0483786025415885|4.78|151.0|7|2|sense L1MD3_dup2903|chrX:73977346-73977688:-|1.331920449588219|0.0483786025415885|4.78|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 505.97406005859375 3 505.973278 1514.89801 NaN NaN NaN NaN NaN NaN NaN 107.34 1 111.02 110.52 111.52 3.6783 0 0 0 0.38417 1 25366 25366 1.3296 0.82369 1 18630 12071 11748 11754 22256 22256 0.16115222955636455 KQRMHFAL 8 Unmodified _KQRMHFAL_ 0 0 0 ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK MSMS UPN46_class_I_Rep_3 1 515.7825927734375 2 515.784379 1029.5542 NaN NaN NaN NaN NaN NaN NaN 12.391 1 12.391 11.891 12.891 0 0 0 0 0.40604 1 101 101 2.5775 0.27475 1 18631 2561 11749 11755 22257 22257 0.04060946247773245 KQRNKWIRH 9 Unmodified _KQRNKWIRH_ 0 0 0 HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|11|1|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|11|1|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 633.3688354492188 2 633.37053 1264.72651 NaN NaN NaN NaN NaN NaN NaN 94.593 1 94.593 94.093 95.093 0 0 0 0 0.4007 1 22944 22944 0.52476 0 1 18632 8263 11750 11756 22258 22258 0.10473233979496399 KQRNLLTVYRR 11 Unmodified _KQRNLLTVYRR_ 0 0 0 REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|59|3|sense REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|59|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 482.795654296875 3 482.959915 1445.85791 -0.17268 -8.3396E-05 -0.12498 -6.0362E-05 -0.29766 -0.00014376 483.2942272870095 21.558 0.13939 21.558 21.504 21.644 0 20 15 2 0 0 0 22.551 1 2424 2424 0.40827 0 1 33465 + 18633 28155 11751 11757 22259 22259 0.15281999556714254 KQRNNGIL 8 Unmodified _KQRNNGIL_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 86.984 1 90.364 89.864 90.864 3.3801 0 0 0 0.40604 1 21799 21799 2.5775 0 1 18634 3958 11752 11758 22260 22260 0.0675541174019827 KQRNNGIL 8 Unmodified _KQRNNGIL_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MSMS UPN48_class_I_Rep_1 5 471.778076171875 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 82.468 1 86.043 85.543 86.543 3.5753 0 0 0 0.40604 1 19696 19696 2.5775 0 1 18635 3958 11752 11758 22261 22261 0.0675541174019827 KQRNNGIL 8 Unmodified _KQRNNGIL_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MSMS UPN48_class_I_Rep_1 5 471.7782287597656 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 82.606 1 86.181 85.681 86.681 3.5753 0 0 0 0.40604 1 19732 19732 2.5775 0 1 18636 3958 11752 11758 22262 22262 0.0675541174019827 KQRNNGIL 8 Unmodified _KQRNNGIL_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MSMS UPN48_class_I_Rep_3 7 471.7773132324219 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 82.492 1 86.198 85.698 86.698 3.7066 0 0 0 0.40604 1 19554 19554 2.5775 0 1 18637 3958 11752 11758 22263 22263 0.0675541174019827 KQRQRKWFAMY 11 Unmodified _KQRQRKWFAMY_ 0 0 0 REV__L1MEc_dup8703|chr7:152122767-152124358:+|2.2264988270237054|0.1763734667697287|3.66|151.0|58|3|sense REV__L1MEc_dup8703|chr7:152122767-152124358:+|2.2264988270237054|0.1763734667697287|3.66|151.0|58|3|sense MSMS UPN48_class_I_Rep_3 7 514.6101684570312 3 514.610117 1540.80852 NaN NaN NaN NaN NaN NaN NaN 26.853 1 30.609 30.109 31.109 3.7555 0 0 0 0.38417 1 3454 3454 0.094841 0 1 + 18638 28490 11753 11759 22264 22264 0.05974968276268555 KQRRPMRLL 9 Unmodified _KQRRPMRLL_ 0 0 0 ENST00000340437.8_1_11:61171383-61171542:-|nuORF ENST00000340437.8_1_11:61171383-61171542:-|nuORF ENST00000340437.8_1_11:61171383-61171542:-|nuORF MSMS UPN47_class_I_Rep_1 2 599.3718872070312 2 599.371684 1196.72881 NaN NaN NaN NaN NaN NaN NaN 85.873 1 89.488 88.988 89.988 3.6153 0 0 0 0.4007 1 21446 21446 0.52476 0 1 18639 6230 11754 11760 22265 22265 0.13831946392974714 KQRRYDWS 8 Unmodified _KQRRYDWS_ 0 0 0 REV__ENST00000449376.5_1_3:48960220-48964907:+|nuORF REV__ENST00000449376.5_1_3:48960220-48964907:+|nuORF MSMS UPN48_class_I_Rep_3 7 569.791015625 2 569.791247 1137.56794 NaN NaN NaN NaN NaN NaN NaN 35.529 1 39.197 38.697 39.697 3.6682 0 0 0 0.40604 1 5772 5772 2.5775 0 1 + 18640 22380 11755 11761 22266 22266 0.004658952805584704 KQRTNSMLFL 10 Unmodified _KQRTNSMLFL_ 0 0 0 L1PA16_dup13383|chr20:8177695-8179846:-|1.822919824578048|0.0403206280885491|5.5|151.0|28|2|sense L1PA16_dup13383|chr20:8177695-8179846:-|1.822919824578048|0.0403206280885491|5.5|151.0|28|2|sense L1PA16_dup13383|chr20:8177695-8179846:-|1.822919824578048|0.0403206280885491|5.5|151.0|28|2|sense MSMS UPN48_class_I_Rep_3 7 619.3387451171875 2 619.339715 1236.66488 NaN NaN NaN NaN NaN NaN NaN 82.291 1 85.997 85.497 86.497 3.7066 0 0 0 0.53105 1 19499 19499 1.4819 0.28856 1 18641 14051 11756 11762 22267 22267 0.05601121445351964 KQSCLSLSFF 10 Unmodified _KQSCLSLSFF_ 0 0 0 REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|9|1|sense REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.294189453125 2 580.294442 1158.57433 0.56598 0.00032843 -2.1013 -0.0012194 -1.5353 -0.00089092 580.2934369013448 58.903 0.58472 62.402 62.077 62.661 3.4987 39 35 2 0 0 0 0.56155 1 12931 12931 2.7352 0.23671 1 95190 + 18642 23680 11757 11763 22268 22268 0.0013865239707229193 KQSKWLLW 8 Unmodified _KQSKWLLW_ 0 0 0 REV__L1PA14_dup2643|chr14:35184526-35185391:-|1.5065739819262578|0.0133130976796663|6.82|151.0|14|2|sense REV__L1PA14_dup2643|chr14:35184526-35185391:-|1.5065739819262578|0.0133130976796663|6.82|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 544.802001953125 2 544.816202 1087.61785 NaN NaN NaN NaN NaN NaN NaN 14.679 1 14.679 14.179 15.179 0 0 0 0 0.40746 1 693 693 0.69038 0.088878 1 + 18643 29161 11758 11764 22269 22269 0.07754629956502868 KQSSQFSF 8 Unmodified _KQSSQFSF_ 0 0 0 AluJr_dup50197|chr10:103155882-103156172:+|1.7778484882339622|0.0202803559430896|6.45|151.0|15|1|anti-sense AluJr_dup50197|chr10:103155882-103156172:+|1.7778484882339622|0.0202803559430896|6.45|151.0|15|1|anti-sense AluJr_dup50197|chr10:103155882-103156172:+|1.7778484882339622|0.0202803559430896|6.45|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_1 5 479.7369689941406 2 479.735074 957.455596 NaN NaN NaN NaN NaN NaN NaN 59.217 1 62.697 62.197 63.197 3.4801 0 0 0 0.37141 1 12992 12992 17.113 0.1706 1 18644 157 11759 11765 22270 22270 -0.02483378516274115 KQTGSDWTP 9 Unmodified _KQTGSDWTP_ 0 0 0 REV__L1MC3_dup242|chr1:77596253-77598044:+|2.9169370952928264|0.0914424693018506|5.0|151.0|22|1|sense REV__L1MC3_dup242|chr1:77596253-77598044:+|2.9169370952928264|0.0914424693018506|5.0|151.0|22|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 509.7744140625 2 510.243264 1018.47197 -0.26182 -0.00013359 0.32454 0.0001656 0.062721 3.2003E-05 510.24341645707784 30.295 0.40214 33.777 33.585 33.988 3.4821 39 32 2 0 0 0 0.12034 1 5033 5033 7.2892 2.0586 1 47609 + 18645 26728 11760 11766 22271 22271 -0.03652297350186018 KQTKKHNFI 9 Unmodified _KQTKKHNFI_ 0 0 0 REV__L1MC_dup450|chr1:211805067-211805257:+|1.0071409734032246|0.0184403116744355|5.77|151.0|5|2|sense REV__L1MC_dup450|chr1:211805067-211805257:+|1.0071409734032246|0.0184403116744355|5.77|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 572.33544921875 2 572.33529 1142.65603 NaN NaN NaN NaN NaN NaN NaN 60.48 1 63.996 63.496 64.496 3.5169 0 0 0 0.38299 1 13291 13291 4.756 0.81161 1 + 18646 26472 11761 11767 22272 22272 0.09040515871174648 KQTMDPVPKE 10 Unmodified _KQTMDPVPKE_ 0 0 0 REV__nc|ENSG00000171316|Q9P2D1-4|CHD7 REV__nc|ENSG00000171316|Q9P2D1-4|CHD7 MSMS UPN47_class_I_Rep_1 2 586.8006591796875 2 586.802631 1171.59071 NaN NaN NaN NaN NaN NaN NaN 47.836 1 51.518 51.018 52.018 3.6819 0 0 0 0.53105 1 10266 10266 1.1933 0.39971 1 + 18647 32060 11762 11768 22273 22273 0.011777335631450114 KQTPKLSVKKN 11 Unmodified _KQTPKLSVKKN_ 0 0 0 REV__L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|18|1|sense REV__L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|18|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 423.5976867675781 3 424.266233 1269.77687 0.082136 3.4847E-05 0.19151 8.1251E-05 0.27364 0.0001161 424.2663530793288 97.852 0.076302 101.63 101.58 101.65 3.779 15 10 2 0 0 0 22.551 1 23240 23240 2.4348 0.69251 1 118320 + 18648 27643 11763 11769 22274 22274 0.15277298793989758 KQTQTFTTY 9 Unmodified _KQTQTFTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN46_class_I_Rep_3 1 559.2798461914062 2 559.279846 1116.54514 0.27737 0.00015513 -0.1379 -7.7126E-05 0.13946 7.8E-05 559.2797119594611 34.665 0.55543 34.665 34.476 35.031 0 62 42 2 0 0 0 0.12096 2 6238 6220;6238 29.841 8.3036 1 102940 18649 1917 11764 11770 22275;22276 22276 -0.00847168627569772 KQTTIKNEHM 10 Unmodified _KQTTIKNEHM_ 0 0 0 REV__L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|51|3|sense REV__L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|51|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 614.8289184570312 2 615.31898 1228.62341 0.5089 0.00031314 -0.19298 -0.00011874 0.31592 0.00019439 615.3187597023817 66.209 0.43713 69.661 69.536 69.973 3.4516 36 28 2 0 0 0 0.84575 1 15114 15114 13.906 1.6654 1 111450 + 18650 25955 11765 11771 22277 22277 0.01823940685994785 KQTTIKNEHM 10 Unmodified _KQTTIKNEHM_ 0 0 0 REV__L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|51|3|sense REV__L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|51|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 615.31898 1228.62341 0.6134 0.00037743 -0.32223 -0.00019827 0.29117 0.00017916 615.3186586810896 66.003 0.33923 69.511 69.347 69.686 3.5077 -0.075017 -7.154E-05 NaN 13.906 35 24 2 NaN NaN NaN NaN 0 NaN NaN 0 110850 + 18651 25955 11765 11771 0.01823940685994785 KQVQIQQYY 9 Unmodified _KQVQIQQYY_ 0 0 0 REV__nc|ENSG00000110013|Q9HAT2-2|SIAE REV__nc|ENSG00000110013|Q9HAT2-2|SIAE MSMS UPN47_class_I_Rep_3 4 599.3153686523438 2 599.316763 1196.61897 NaN NaN NaN NaN NaN NaN NaN 52.053 1 55.259 54.759 55.759 3.2055 0 0 0 0.35339 1 11636 11636 7.9102 0 1 + 18652 18420 11766 11772 22278 22278 0.028527995347758406 KQVRGPASNY 10 Unmodified _KQVRGPASNY_ 0 0 0 ENST00000509630.1_1_4:145573840-145606800:+|nuORF;nc|ENSG00000164161|Q96QV1-2|HHIP;ENSG00000164161|ENST00000296575|HHIP ENST00000509630.1_1_4:145573840-145606800:+|nuORF ENST00000509630.1_1_4:145573840-145606800:+|nuORF MSMS UPN47_class_I_Rep_2 3 560.3003540039062 2 560.298904 1118.58326 NaN NaN NaN NaN NaN NaN NaN 44.012 1 47.37 46.87 47.87 3.358 0 0 0 0.53105 1 9136 9136 1.3295 0.13619 1 18653 4089 11767 11773 22279 22279 0.028707620777595366 KQWFFFFF 8 Unmodified _KQWFFFFF_ 0 0 0 REV__AluSx_dup96485|chr17:19063349-19063619:+|1.7361060754037023|0.0173728258124655|6.64|151.0|14|1|anti-sense REV__AluSx_dup96485|chr17:19063349-19063619:+|1.7361060754037023|0.0173728258124655|6.64|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.80126953125 2 598.80002 1195.58549 NaN NaN NaN NaN NaN NaN NaN 55.73 1 59.04 58.54 59.54 3.3102 0 0 0 0.40746 1 12701 12701 0.69038 0 1 + 18654 17160 11768 11774 22280 22280 -0.004481574464989535 KQWKEKVRYQV 11 Unmodified _KQWKEKVRYQV_ 0 0 0 REV__L1MB3_dup1964|chr2:86531550-86533509:-|2.615057290675124|0.2163194979606704|3.6|151.0|79|1|anti-sense REV__L1MB3_dup1964|chr2:86531550-86533509:-|2.615057290675124|0.2163194979606704|3.6|151.0|79|1|anti-sense MSMS UPN48_class_I_Rep_3 7 497.9514465332031 3 497.952537 1490.83578 NaN NaN NaN NaN NaN NaN NaN 21.083 1 24.75 24.25 25.25 3.6667 0 0 0 0.38417 1 1920 1920 1.1098 0 1 + 18655 25859 11769 11775 22281 22281 0.1099977508831671 KQWRCRSPN 9 Unmodified _KQWRCRSPN_ 0 0 0 REV__HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|37|1|anti-sense REV__HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.7984008789062 2 587.798549 1173.58254 0.39767 0.00023375 -0.5113 -0.00030054 -0.11363 -6.6791E-05 587.7978638845743 45.174 0.6995 48.932 48.638 49.338 3.7579 75 52 2 0 0 0 0.49026 1 8728 8728 1.6526 0 1 160400 + 18656 23397 11770 11776 22282 22282 0.0026964415708334855 KQYADVEGF 9 Unmodified _KQYADVEGF_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MSMS UPN46_class_I_Rep_3 1 528.7526245117188 2 528.753464 1055.49238 NaN NaN NaN NaN NaN NaN NaN 45.599 1 45.599 45.099 46.099 0 0 0 0 0.075414 1 9286 9286 29.841 10.402 1 18657 4157 11771 11777 22283 22283 -0.03315126690381476 KQYAKTLI 8 Unmodified _KQYAKTLI_ 0 0 0 L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|9|1|sense L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|9|1|sense L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 482.7952880859375 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 113.73 1 117.3 116.8 117.8 3.572 0 0 0 0.40746 1 28076 28076 0.69038 0 1 18658 11492 11772 11778 22284 22284 0.09207234828284072 KQYDSFTFTA 10 Unmodified _KQYDSFTFTA_ 0 0 0 ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2 ENST00000503010.1_1_5:114951908-114961566:-|nuORF ENST00000503010.1_1_5:114951908-114961566:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 604.2867431640625 2 604.285128 1206.5557 -0.2838 -0.00017149 0.58049 0.00035078 0.29669 0.00017929 604.2852572533466 23.215 0.681 26.566 26.283 26.964 3.3503 73 53 2 0 0 0 0.56333 1 3005 3005 1.4819 0.15237 1 61994 18659 2878 11773 11779 22285 22285 -0.03931185973146967 KQYFKATL 8 Unmodified _KQYFKATL_ 0 0 0 REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|33|1|sense MSMS UPN46_class_I_Rep_3 1 499.70208740234375 2 499.78711 997.559667 NaN NaN NaN NaN NaN NaN NaN 65.813 1 65.813 65.313 66.313 0 0 0 0 0.40292 1 14896 14896 6.7232 1.9672 1 + 18660 30046 11774 11780 22286 22286 0.06078948311221666 KQYGNEVFL 9 Unmodified _KQYGNEVFL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_1 2 549.285400390625 2 549.284931 1096.55531 0.17204 9.4501E-05 -0.18445 -0.00010132 -0.012407 -6.8149E-06 549.2848899638713 46.365 0.66896 50.065 49.775 50.444 3.6999 111 44 3 0 0 0 0.088679 2 9811 9811;9890 36.506 6.2814 1 237840 18661 3728 11775 11781 22287;22288 22287 0.010894390976773138 KQYGNEVFL 9 Unmodified _KQYGNEVFL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_2 3 549.2847900390625 2 549.284931 1096.55531 0.27016 0.0001484 -0.62211 -0.00034171 -0.35194 -0.00019332 549.2847684028332 46.753 0.85874 50.105 49.755 50.614 3.3515 135 61 3 0 0 0 0.17897 3 9958 9921;9958;9999 22.736 5.66 1 221710 18662 3728 11775 11781 22289;22290;22291 22290 0.010894390976773138 KQYGNEVFL 9 Unmodified _KQYGNEVFL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_3 4 549.2847290039062 2 549.284931 1096.55531 0.31056 0.00017058 -0.31342 -0.00017215 -0.0028592 -1.5705E-06 549.2848645177991 46.784 0.9126 50.027 49.73 50.642 3.2439 129 56 3 0 0 0 0.20317 3 10101 10015;10061;10101 20.415 3.9084 1 252050 18663 3728 11775 11781 22292;22293;22294 22294 0.010894390976773138 KQYLIAAPLQK 11 Unmodified _KQYLIAAPLQK_ 0 0 0 REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO MULTI-MSMS UPN48_class_I_Rep_3 7 636.8882446289062 2 636.887355 1271.76016 0.6258 0.00039856 0.62529 0.00039824 1.2511 0.0007968 636.887473438631 108.69 0.57635 112.36 112.19 112.77 3.6751 128 63 3 0 0 0 0.59712 1 25712 25712 5.2969 1.1074 1 17076000 + 18664 20891 11776 11782 22295 22295 0.13514797908010223 KQYQTNST 8 Unmodified _KQYQTNST_ 0 0 0 REV__MER33_dup1920|chr3:100738775-100739065:-|1.3201555126159596|0.416753730213193|1.66|151.0|1|1|sense REV__MER33_dup1920|chr3:100738775-100739065:-|1.3201555126159596|0.416753730213193|1.66|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 485.23553466796875 2 485.235439 968.456324 NaN NaN NaN NaN NaN NaN NaN 87.303 1 91.093 90.593 91.593 3.7905 0 0 0 0.40746 1 20712 20712 0.69038 0 1 + 18665 31259 11777 11783 22296 22296 -0.029165838672270183 KQYRRQNRNRE 11 Unmodified _KQYRRQNRNRE_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|12|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|12|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.6141967773438 3 516.613578 1546.8189 0.30377 0.00015693 1.6892 0.00087264 1.9929 0.0010296 516.6145360317546 43.243 0.5533 43.243 43.082 43.635 0 75 51 2 0 0 0 0.67462 1 8661 8661 1.0136 0.55906 1 256500 18666 11145 11778 11784 22297 22297 0.06736667255086104 KQYYHLHF 8 Unmodified _KQYYHLHF_ 0 0 0 REV__L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|2|1|sense REV__L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 568.2874145507812 2 568.287808 1134.56106 NaN NaN NaN NaN NaN NaN NaN 43.718 1 43.718 43.218 44.218 0 0 0 0 0.40738 1 8751 8751 0.79363 0 1 + 18667 26043 11779 11785 22298 22298 -0.0008341760001258081 KRAEEKYK 8 Unmodified _KRAEEKYK_ 0 0 0 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 MSMS UPN46_class_I_Rep_3 1 526.2982177734375 2 526.298373 1050.58219 NaN NaN NaN NaN NaN NaN NaN 33.095 1 33.095 32.595 33.595 0 0 0 0 0.40659 1 5748 5748 1.8442 0 1 + 18668 21267 11780 11786 22299 22299 0.05892547708845086 KRAELALHR 9 Unmodified _KRAELALHR_ 0 0 0 L1MC5a_dup4866|chr5:291734-292246:-|1.2048377734520217|0.2208073099426182|2.45|151.0|6|2|sense L1MC5a_dup4866|chr5:291734-292246:-|1.2048377734520217|0.2208073099426182|2.45|151.0|6|2|sense L1MC5a_dup4866|chr5:291734-292246:-|1.2048377734520217|0.2208073099426182|2.45|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 547.3333740234375 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 72.039 1 75.419 74.919 75.919 3.3799 0 0 0 0.39518 1 17602 17602 1.8442 0 1 18669 11749 11781 11787 22300 22300 0.108990514482457 KRAHIAKAK 9 Unmodified _KRAHIAKAK_ 0 0 0 L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|96|3|sense;L1PB1_dup11987|chr18:2858936-2860244:-|1.5198360893746596|0.0137676804055303|6.79|149.0|16|2|sense L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|96|3|sense L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|96|3|sense MSMS UPN48_class_I_Rep_1 5 511.8326721191406 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 20.04 1 23.578 23.078 24.078 3.5378 0 0 0 0.4007 1 1625 1625 0.52476 0.52476 1 18670 15026 11782 11788 22301 22301 0.14092256799222014 KRAIFFFLQR 10 Unmodified _KRAIFFFLQR_ 0 0 0 MER11A_dup939|chr21:36267664-36268700:-|3.100484257152197|0.3087685370078078|3.33|151.0|4|1|sense;MER11A_dup283|chr4:139414287-139415287:+|1.7022603114363806|0.2003077149583809|3.09|151.0|17|2|sense;MER11A_dup143|chr3:18449321-18450428:-|2.1958219189378445|0.0560532491826211|5.29|151.0|30|3|sense;MER11A_dup106|chr2:135177139-135178156:-|2.361489158661912|0.4852978994349242|2.28|151.0|19|2|sense;MER11A_dup112|chr2:152163150-152164254:+|1.0281484051180505|0.1252630610288256|3.04|151.0|6|1|sense MER11A_dup939|chr21:36267664-36268700:-|3.100484257152197|0.3087685370078078|3.33|151.0|4|1|sense MER11A_dup939|chr21:36267664-36268700:-|3.100484257152197|0.3087685370078078|3.33|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 442.5993957519531 3 442.599547 1324.77681 -0.027608 -1.2219E-05 0.31977 0.00014153 0.29217 0.00012931 442.5995362295794 47.095 1.7122 50.614 49.754 51.466 3.5192 337 121 4 0 0 0 0.56317 1 9453 9453 1.5923 1.5923 1 522740 18671 15779 11783 11789 22302 22302 0.12741343584639253 KRAPRLRRRL 10 Unmodified _KRAPRLRRRL_ 0 0 0 ENST00000335565.4_2_X:144903054-144903396:+|nuORF ENST00000335565.4_2_X:144903054-144903396:+|nuORF ENST00000335565.4_2_X:144903054-144903396:+|nuORF MSMS UPN48_class_I_Rep_1 5 441.29736328125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 23.618 1 27.184 26.684 27.684 3.5655 0 0 0 0.53105 1 2490 2490 0.15932 0.01943 1 18672 6204 11784 11790 22303 22303 0.22148866441534665 KRARMHLF 8 Unmodified _KRARMHLF_ 0 0 0 REV__L1MA4A_dup2999|chr8:70119009-70119873:-|2.178737758477973|0.21513851417274|3.34|151.0|6|1|sense REV__L1MA4A_dup2999|chr8:70119009-70119873:-|2.178737758477973|0.21513851417274|3.34|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 529.804443359375 2 529.805645 1057.59674 NaN NaN NaN NaN NaN NaN NaN 20.125 1 23.747 23.247 24.247 3.6215 0 0 0 0.40738 1 1653 1653 0.79363 0.10326 1 + 18673 25261 11785 11791 22304 22304 0.07024341375995391 KRARRGILVVW 11 Unmodified _KRARRGILVVW_ 0 0 0 L1MD2_dup4990|chr8:67180134-67180764:+|1.7645510744084487|0.1660461190656306|3.41|151.0|12|2|sense L1MD2_dup4990|chr8:67180134-67180764:+|1.7645510744084487|0.1660461190656306|3.41|151.0|12|2|sense L1MD2_dup4990|chr8:67180134-67180764:+|1.7645510744084487|0.1660461190656306|3.41|151.0|12|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 451.6243591308594 3 451.957845 1352.85171 0.015423 6.9707E-06 0.97333 0.00043991 0.98876 0.00044688 451.95893236179927 45.134 0.26453 48.65 48.462 48.726 3.5162 26 20 2 0 0 0 22.551 1 8624 8624 1.3296 0.82369 1 90270 18674 12003 11786 11792 22305 22305 0.18939526115855188 KRAWKWFGS 9 Unmodified _KRAWKWFGS_ 0 0 0 REV__ENSG00000025293.17,PHF20,chr20,+,I2.1,35775059,35782327|43|11.78|1|intron REV__ENSG00000025293.17,PHF20,chr20,+,I2.1,35775059,35782327|43|11.78|1|intron MSMS UPN47_class_I_Rep_3 4 583.3175659179688 2 583.3169 1164.61925 NaN NaN NaN NaN NaN NaN NaN 64.958 1 68.137 67.637 68.637 3.1795 0 0 0 0.39428 1 15570 15570 2.0598 0 1 + 18675 17617 11787 11793 22306 22306 0.04352264045269294 KRAYCYTGPD 10 Unmodified _KRAYCYTGPD_ 0 0 0 REV__L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|13|2|sense REV__L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 587.2691040039062 2 587.271498 1172.52844 NaN NaN NaN NaN NaN NaN NaN 18.486 1 21.876 21.376 22.376 3.3898 0 0 0 0.53105 1 1571 1571 0.40072 0.093686 1 + 18676 26834 11788 11794 22307 22307 -0.05091992785196453 KRCKFTSR 8 Unmodified _KRCKFTSR_ 0 0 0 REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|25|2|sense REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 513.2890014648438 2 513.287285 1024.56002 NaN NaN NaN NaN NaN NaN NaN 65.134 1 68.49 67.99 68.99 3.3557 0 0 0 0.40643 1 15515 15515 2.0598 0 1 + 18677 29274 11789 11795 22308 22308 0.04872044759417804 KRCKFTSR 8 Unmodified _KRCKFTSR_ 0 0 0 REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|25|2|sense REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|25|2|sense MSMS UPN47_class_I_Rep_3 4 513.2872314453125 2 513.287285 1024.56002 NaN NaN NaN NaN NaN NaN NaN 65.343 1 68.522 68.022 69.022 3.1795 0 0 0 0.40643 1 15687 15687 2.0598 0 1 + 18678 29274 11789 11795 22309 22309 0.04872044759417804 KRCLRQKKWTR 11 Unmodified _KRCLRQKKWTR_ 0 0 0 REV__HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|30|3|sense REV__HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 501.6344299316406 3 501.633145 1501.8776 NaN NaN NaN NaN NaN NaN NaN 99.903 1 99.903 99.403 100.4 0 0 0 0 0.38417 1 24349 24349 0.094841 0 1 + 18679 23396 11790 11796 22310 22310 0.14674052295822548 KRCMLMSHEE 10 Unmodified _KRCMLMSHEE_ 0 0 0 REV__L1PA2_dup3449|chr10:30948037-30953410:+|1.1083981677439356|0.0934299521211378|3.57|151.0|122|3|sense REV__L1PA2_dup3449|chr10:30948037-30953410:+|1.1083981677439356|0.0934299521211378|3.57|151.0|122|3|sense MSMS UPN47_class_I_Rep_1 2 632.2864990234375 2 632.285768 1262.55698 NaN NaN NaN NaN NaN NaN NaN 66.589 1 69.947 69.447 70.447 3.3576 0 0 0 0.53105 1 15961 15961 1.6526 0 1 + 18680 29488 11791 11797 22311 22311 -0.06379334471876064 KRDNLTSYF 9 Unmodified _KRDNLTSYF_ 0 0 0 L1MA4A_dup988|chr3:18298757-18301826:+|3.53572763260657|0.0163814772008965|7.75|149.0|206|3|anti-sense L1MA4A_dup988|chr3:18298757-18301826:+|3.53572763260657|0.0163814772008965|7.75|149.0|206|3|anti-sense L1MA4A_dup988|chr3:18298757-18301826:+|3.53572763260657|0.0163814772008965|7.75|149.0|206|3|anti-sense MSMS UPN47_class_I_Rep_3 4 572.2932739257812 2 572.293288 1142.57202 NaN NaN NaN NaN NaN NaN NaN 36.239 1 39.494 38.994 39.994 3.2547 0 0 0 0.39598 1 6809 6809 1.6526 0 1 18681 9865 11792 11798 22312 22312 0.006439399836153825 KRDPRNRPT 9 Unmodified _KRDPRNRPT_ 0 0 0 L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|19|2|sense L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|19|2|sense L1MD_dup5154|chrX:72415148-72415929:-|2.3643203930808414|0.1283221648953929|4.2|151.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 570.322998046875 2 570.323245 1138.63194 NaN NaN NaN NaN NaN NaN NaN 46.885 1 50.634 50.134 51.134 3.7494 0 0 0 0.39518 1 9213 9213 1.8442 0 1 18682 11883 11793 11799 22313 22313 0.06816675437494268 KREEPNRCN 9 Unmodified _KREEPNRCN_ 0 0 0 L1P1_dup1740|chr9:77970556-77971783:+|2.97562191985936|0.0655724027487687|5.5|151.0|24|3|sense L1P1_dup1740|chr9:77970556-77971783:+|2.97562191985936|0.0655724027487687|5.5|151.0|24|3|sense L1P1_dup1740|chr9:77970556-77971783:+|2.97562191985936|0.0655724027487687|5.5|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.27734375 2 573.277646 1144.54074 -0.12877 -7.3818E-05 -0.43017 -0.00024661 -0.55893 -0.00032042 573.2773581638181 17.418 1.1676 20.969 20.627 21.795 3.5504 270 141 3 0 0 0 0.49187 1 1430 1430 1.4819 0 1 69158 18683 13470 11794 11800 22314 22314 -0.02574956322109756 KREESNTYNK 10 Unmodified _KREESNTYNK_ 0 0 0 L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|147|3|sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|147|3|sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|147|3|sense MSMS UPN48_class_I_Rep_3 7 634.6455078125 2 634.815116 1267.61568 NaN NaN NaN NaN NaN NaN NaN 41.113 1 44.759 44.259 45.259 3.6458 0 0 0 0.53105 1 7391 7391 2.4985 0.41248 1 18684 14407 11795 11801 22315 22315 -0.007424953098961851 KREFSQTHFMR 11 Unmodified _KREFSQTHFMR_ 0 0 0 L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|40|1|sense L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|40|1|sense L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|40|1|sense MSMS UPN48_class_I_Rep_2 6 489.5821838378906 3 489.582227 1465.72485 NaN NaN NaN NaN NaN NaN NaN 60.995 1 64.474 63.974 64.974 3.4785 0 0 0 0.38417 1 13513 13513 0.50596 0 1 18685 14271 11796 11802 22316 22316 0.010618121085599341 KREGSRAKND 10 Unmodified _KREGSRAKND_ 0 0 0 REV__LTR78_dup3385|chr11:58547433-58547925:+|1.1938378184967433|0.0913954017694984|3.71|151.0|3|1|sense REV__LTR78_dup3385|chr11:58547433-58547925:+|1.1938378184967433|0.0913954017694984|3.71|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 580.8086547851562 2 580.810168 1159.60578 NaN NaN NaN NaN NaN NaN NaN 46.489 1 50.239 49.739 50.739 3.7494 0 0 0 0.53105 1 9090 9090 2.9952 0.49676 1 + 18686 31009 11797 11803 22317 22317 0.03236361475364902 KREHKRKRHQL 11 Unmodified _KREHKRKRHQL_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MULTI-MSMS UPN48_class_I_Rep_1 5 505.974365234375 3 505.974558 1514.90185 0.21123 0.00010688 0.15068 7.624E-05 0.36191 0.00018312 505.9747477451689 106.96 0.80494 110.59 110.1 110.9 3.6299 459 104 6 0 0 0 0.68502 1 25669 25669 0.073264 0.073264 1 9368100 + 18687 18163 11798 11804 22318 22318 0.1649902877375098 KREHKRKRHQL 11 Unmodified _KREHKRKRHQL_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MULTI-MSMS UPN48_class_I_Rep_3 7 505.97430419921875 3 505.974558 1514.90185 0.2705 0.00013687 -0.043634 -2.2078E-05 0.22687 0.00011479 505.9745604772102 106.75 0.86492 110.44 110.1 110.96 3.6899 468 121 5 0 0 0 0.68132 1 25110 25110 0.40827 0.40827 1 7507600 + 18688 18163 11798 11804 22319 22319 0.1649902877375098 KREKEKAKPLK 11 Unmodified _KREKEKAKPLK_ 0 0 0 REV__L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|27|2|sense REV__L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 452.2685852050781 3 452.289149 1353.84562 -1.0997 -0.00049739 -0.41953 -0.00018975 -1.5192 -0.00068714 452.28886798597705 13.255 0.33839 16.628 16.543 16.882 3.3734 65 39 2 0 0 0 0.68132 1 297 297 0.40827 0.40827 1 50393 + 18689 24142 11799 11805 22320 22320 0.18284963093697115 KREKEKAKPLK 11 Unmodified _KREKEKAKPLK_ 0 0 0 REV__L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|27|2|sense REV__L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|27|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 452.289149 1353.84562 -0.44315 -0.00020043 -0.91767 -0.00041505 -1.3608 -0.00061548 452.28865178112363 13.135 0.34917 16.592 16.509 16.858 3.457 -0.015288 -0.00028862 NaN 0.40827 68 36 4 NaN NaN NaN NaN 0 NaN NaN 0 73566 + 18690 24142 11799 11805 0.18284963093697115 KREKEKAKPLK 11 Unmodified _KREKEKAKPLK_ 0 0 0 REV__L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|27|2|sense REV__L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|27|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 452.289149 1353.84562 -1.0997 -0.00049739 -0.41953 -0.00018975 -1.5192 -0.00068714 452.28886798597705 13.255 0.33839 16.628 16.543 16.882 3.3734 0.021307 0.00038729 NaN 0.40827 65 39 2 NaN NaN NaN NaN 0 NaN NaN 0 50393 + 18691 24142 11799 11805 0.18284963093697115 KREKKKKMLVR 11 Unmodified _KREKKKKMLVR_ 0 0 0 L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|32|3|sense L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|32|3|sense L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|32|3|sense MSMS UPN48_class_I_Rep_3 7 481.9811706542969 3 481.981662 1442.92316 NaN NaN NaN NaN NaN NaN NaN 61.446 1 64.959 64.459 65.459 3.5129 0 0 0 0.38417 1 13580 13580 0.094841 0 1 18692 9781 11800 11806 22321 22321 0.21941277758219258 KRELIYGL 8 Unmodified _KRELIYGL_ 0 0 0 REV__nc|ENSG00000134571|Q14896-2|MYBPC3 REV__nc|ENSG00000134571|Q14896-2|MYBPC3 MULTI-MSMS UPN47_class_I_Rep_3 4 496.29486083984375 2 496.300384 990.586216 -0.6617 -0.0003284 0.23492 0.00011659 -0.42678 -0.00021181 496.3003595184849 13.252 0.64936 16.626 16.479 17.128 3.3734 169 74 4 0 0 0 0.82752 1 376 376 0.79363 0 1 458130 + 18693 19103 11801 11807 22322 22322 0.09054637202575577 KREPEKIS 8 Unmodified _KREPEKIS_ 0 0 0 REV__nc|ENSG00000165325|Q05D60-2|DEUP1 REV__nc|ENSG00000165325|Q05D60-2|DEUP1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.7853698730469 2 493.785099 985.555644 0.0083158 4.1062E-06 0.28603 0.00014124 0.29435 0.00014534 493.7852153192675 49.897 0.537 53.526 53.352 53.889 3.6285 48 29 2 0 0 0 0.82752 1 10876 10876 6.2058 0 1 133280 + 18694 20117 11802 11808 22323 22323 0.06228858817530636 KREPQRYCKKR 11 Unmodified _KREPQRYCKKR_ 0 0 0 REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|91|2|sense REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|91|2|sense MSMS UPN48_class_I_Rep_2 6 497.95062255859375 3 497.949021 1490.82523 NaN NaN NaN NaN NaN NaN NaN 21.63 1 25.276 24.776 25.776 3.6459 0 0 0 0.38417 1 2076 2076 1.2148 0.10508 1 + 18695 30078 11803 11809 22324 22324 0.09945469162221343 KRESVPGMP 9 Unmodified _KRESVPGMP_ 0 0 0 REV__nc|ENSG00000196712|P21359-2|NF1;REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF REV__ENST00000495910.6_1_17:29490228-29576996:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.7661437988281 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 34.972 1 38.487 37.987 38.987 3.5144 0 0 0 0.3967 1 5662 5662 1.4819 0.28856 1 + 18696 21052;22656 11804 11810 22325 22325 0.017372299113617373 KRFAVYKL 8 Unmodified _KRFAVYKL_ 0 0 0 ENST00000564925.1_1_4:79696522-79696732:-|nuORF ENST00000564925.1_1_4:79696522-79696732:-|nuORF ENST00000564925.1_1_4:79696522-79696732:-|nuORF MSMS UPN47_class_I_Rep_1 2 512.8208618164062 2 512.818744 1023.62294 NaN NaN NaN NaN NaN NaN NaN 29.169 1 32.927 32.427 33.427 3.7578 0 0 0 0.40746 1 4595 4595 0.69038 0 1 18697 7481 11805 11811 22326 22326 0.11206933819130427 KRFCHFNY 8 Unmodified _KRFCHFNY_ 0 0 0 REV__nc|ENSG00000025039|Q9NQL2-2|RRAGD REV__nc|ENSG00000025039|Q9NQL2-2|RRAGD MSMS UPN47_class_I_Rep_3 4 557.76611328125 2 557.766186 1113.51782 NaN NaN NaN NaN NaN NaN NaN 60.81 1 63.975 63.475 64.475 3.1651 0 0 0 0.40604 1 14304 14304 2.5775 0 1 + 18698 17616 11806 11812 22327 22327 -0.03439930648937661 KRFFSKYY 8 Unmodified _KRFFSKYY_ 0 0 0 Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|66|3|sense;Tigger1_dup4511|chr5:157845855-157847224:+|3.9170084384178434|0.0190207579685902|7.69|151.0|12|1|sense;Tigger1_dup8635|chr11:66120983-66123189:+|5.679363049804595|0.0567648197175665|6.64|151.0|7|1|sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|66|3|sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|66|3|sense MSMS UPN48_class_I_Rep_2 6 569.7918701171875 2 569.805834 1137.59712 NaN NaN NaN NaN NaN NaN NaN 39.318 1 43.048 42.548 43.548 3.7297 0 0 0 0.40625 1 6961 6961 2.3027 0.24298 1 18699 33101 11807 11813 22328 22328 0.033820395768543676 KRFGRKRRY 9 Unmodified _KRFGRKRRY_ 0 0 0 ENSG00000233608|ENST00000612363|TWIST2 ENSG00000233608|ENST00000612363|TWIST2 ENSG00000233608|ENST00000612363|TWIST2 MULTI-SECPEP UPN48_class_I_Rep_2 6 422.5924377441406 3 422.926657 1265.75814 0.14466 6.1179E-05 0.2664 0.00011267 0.41106 0.00017385 422.9268653725218 61.124 0.33714 64.602 64.418 64.755 3.4785 42 28 2 0 0 0 0.12516 1 13556 13556 1.0715 0.10919 1 181540 18700 5684 11808 11814 22329 22329 0.13589226733461146 KRFGRKRRY 9 Unmodified _KRFGRKRRY_ 0 0 0 ENSG00000233608|ENST00000612363|TWIST2 ENSG00000233608|ENST00000612363|TWIST2 ENSG00000233608|ENST00000612363|TWIST2 MULTI-MATCH UPN48_class_I_Rep_1 5 3 422.926657 1265.75814 0.048849 2.0659E-05 0.6392 0.00027034 0.68805 0.00029099 422.92684913870045 61.377 0.12854 64.845 64.791 64.92 3.4678 0.12113 0.00037072 NaN 1.0715 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 132390 18701 5684 11808 11814 0.13589226733461146 KRFNRGHL 8 Unmodified _KRFNRGHL_ 0 0 0 ENST00000578272.1_1_18:51686149-51714116:-|nuORF ENST00000578272.1_1_18:51686149-51714116:-|nuORF ENST00000578272.1_1_18:51686149-51714116:-|nuORF MSMS UPN48_class_I_Rep_3 7 514.2977905273438 2 514.299042 1026.58353 NaN NaN NaN NaN NaN NaN NaN 45.082 1 48.719 48.219 49.219 3.6372 0 0 0 0.40625 1 8592 8592 2.3027 0 1 18702 7542 11809 11815 22330 22330 0.07130226588265032 KRFRHFIL 8 Unmodified _KRFRHFIL_ 0 0 0 REV__L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|55|1|sense REV__L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|55|1|sense MSMS UPN48_class_I_Rep_1 5 558.84326171875 2 558.843085 1115.67162 NaN NaN NaN NaN NaN NaN NaN 82.223 1 85.798 85.298 86.298 3.5753 0 0 0 0.40738 1 19630 19630 0.79363 0 1 + 18703 29284 11810 11816 22331 22331 0.11840847178905278 KRFSHGPA 8 Unmodified _KRFSHGPA_ 0 0 0 REV__ENSG00000145214|ENST00000273814|DGKQ REV__ENSG00000145214|ENST00000273814|DGKQ MSMS UPN46_class_I_Rep_3 1 450.24676513671875 2 450.245944 898.477334 NaN NaN NaN NaN NaN NaN NaN 71.288 1 71.288 70.788 71.788 0 0 0 0 0.40746 1 16415 16415 0.69038 0 1 + 18704 19505 11811 11817 22332 22332 0.02403471022944359 KRGAPKSSL 9 Unmodified _KRGAPKSSL_ 0 0 0 REV__L1P3_dup690|chr4:13444850-13446816:-|2.002008312508897|0.057112626010644|5.13|151.0|97|3|anti-sense REV__L1P3_dup690|chr4:13444850-13446816:-|2.002008312508897|0.057112626010644|5.13|151.0|97|3|anti-sense MSMS UPN48_class_I_Rep_1 5 472.2878112792969 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.807 1 91.426 90.926 91.926 3.6187 0 0 0 0.39518 1 21049 21049 1.8442 0 1 + 18705 28901 11812 11818 22333 22333 0.08748582400005489 KRGERLRH 8 Unmodified _KRGERLRH_ 0 0 0 L1M4c_dup2527|chr11:67185988-67186789:+|5.1803569121440365|0.2059319321799614|4.65|151.0|13|2|sense L1M4c_dup2527|chr11:67185988-67186789:+|5.1803569121440365|0.2059319321799614|4.65|151.0|13|2|sense L1M4c_dup2527|chr11:67185988-67186789:+|5.1803569121440365|0.2059319321799614|4.65|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 526.3167724609375 2 526.315223 1050.61589 NaN NaN NaN NaN NaN NaN NaN 70.508 1 74.026 73.526 74.526 3.5185 0 0 0 0.4044 1 16318 16318 4.756 0 1 18706 9053 11813 11819 22334 22334 0.09261013991249456 KRGFGFVY 8 Unmodified _KRGFGFVY_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_1 2 487.266357421875 2 487.266345 972.518136 -0.21101 -0.00010282 0.45791 0.00022312 0.2469 0.00012031 487.26640234371143 42.45 1.6287 46.129 45.793 47.422 3.6792 175 105 3 0 0 0 0.82752 1 8601 8601 26.341 5.4701 1 142590 18707 4804 11814 11820 22335 22335 0.03077812342564812 KRGFGFVY 8 Unmodified _KRGFGFVY_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_2 3 487.266357421875 2 487.266345 972.518136 -0.07318 -3.5658E-05 0.045871 2.2352E-05 -0.027309 -1.3307E-05 487.2662576065727 43.025 1.044 46.383 45.976 47.02 3.358 105 70 2 0 0 0 0.82752 2 8821 8821;8824 19.439 4.8573 1 115540 18708 4804 11814 11820 22336;22337 22336 0.03077812342564812 KRGFGFVY 8 Unmodified _KRGFGFVY_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS UPN47_class_I_Rep_3 4 487.2667236328125 2 487.266345 972.518136 -0.1489 -7.2554E-05 0.066908 3.2602E-05 -0.081993 -3.9952E-05 487.2662519104286 43.282 1.2919 46.524 46.073 47.365 3.2419 130 80 2 0 0 0 0.82752 2 9056 9056;9189 8.5933 3.3626 1 100320 18709 4804 11814 11820 22338;22339 22338 0.03077812342564812 KRGFGFVY 8 Unmodified _KRGFGFVY_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MATCH UPN47_class_I_Rep_2 3 2 487.266345 972.518136 -0.09246 -4.5053E-05 -0.28615 -0.00013943 -0.37861 -0.00018449 487.2658099452428 42.605 0.10214 45.966 45.9 46.002 3.3611 -0.081357 -0.00071628 NaN 26.341 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 23248 18710 4804 11814 11820 0.03077812342564812 KRGKEGYY 8 Unmodified _KRGKEGYY_ 0 0 0 L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|78|2|sense L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|78|2|sense L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|78|2|sense MSMS UPN47_class_I_Rep_2 3 500.7527770996094 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 62.175 1 65.434 64.934 65.934 3.2594 0 0 0 0.38221 1 14665 14665 14.582 1.0738 1 18711 13542 11815 11821 22340 22340 0.01400303128991709 KRGLAAPRTLK 11 Unmodified _KRGLAAPRTLK_ 0 0 0 ENSG00000182095.14,TNRC18,chr7,-,I20.1,5333050,5345561|30|20.07|2|intron;ENSG00000182095.14,TNRC18,chr7,-,I21.1,5329970,5332621|46|21.1|3|intron;ENSG00000182095.14,TNRC18,chr7,-,I20.1,5333050,5345561|30|20.07|1|intron;ENSG00000182095.14,TNRC18,chr7,-,I20.1,5333050,5345561|30|20.07|4|intron;ENSG00000182095.14,TNRC18,chr7,-,I21.1,5329970,5332621|46|21.1|5|intron;ENSG00000182095.14,TNRC18,chr7,-,I21.1,5329970,5332621|46|21.1|4|intron;ENSG00000182095.14,TNRC18,chr7,-,I20.1,5333050,5345561|30|20.07|3|intron;ENSG00000182095.14,TNRC18,chr7,-,I21.1,5329970,5332621|46|21.1|1|intron;ENSG00000182095.14,TNRC18,chr7,-,I21.1,5329970,5332621|46|21.1|2|intron;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095.14,TNRC18,chr7,-,I20.1,5333050,5345561|30|20.07|2|intron ENSG00000182095.14,TNRC18,chr7,-,I20.1,5333050,5345561|30|20.07|2|intron MSMS UPN46_class_I_Rep_3 1 404.74505615234375 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 72.36 1 72.36 71.86 72.86 0 0 0 0 0.38417 1 16721 16721 0.40827 0.24894 1 18712 4933 11816 11822 22341 22341 0.17048155579254853 KRGLRRWFR 9 Unmodified _KRGLRRWFR_ 0 0 0 REV__ENST00000572224.1_1_17:7530636-7531149:-|nuORF REV__ENST00000572224.1_1_17:7530636-7531149:-|nuORF MSMS UPN48_class_I_Rep_3 7 637.8868408203125 2 637.88889 1273.76323 NaN NaN NaN NaN NaN NaN NaN 72.221 1 75.748 75.248 76.248 3.5266 0 0 0 0.4007 1 16821 16821 0.52476 0.12405 1 + 18713 23092 11817 11823 22342 22342 0.13729530596060613 KRGPKAIH 8 Unmodified _KRGPKAIH_ 0 0 0 REV__FOXM1|p.W281R|1|0.15|ENSG00000111206|chr12:2868568-2868568|A/G|missense_variant REV__FOXM1|p.W281R|1|0.15|ENSG00000111206|chr12:2868568-2868568|A/G|missense_variant MSMS UPN47_class_I_Rep_1 2 453.78472900390625 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 13.354 1 16.811 16.311 17.311 3.457 0 0 0 0.40604 1 310 310 2.5775 0 1 + 18714 23324 11818 11824 22343 22343 0.0993632332802008 KRGRALAA 8 Unmodified _KRGRALAA_ 0 0 0 REV__ENST00000505686.5_1_5:124080234-124080321:-|nuORF REV__ENST00000505686.5_1_5:124080234-124080321:-|nuORF MSMS UPN46_class_I_Rep_3 1 421.7695007324219 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 91.322 1 91.322 90.822 91.822 0 0 0 0 0.40798 1 22054 22054 0 0 1 + 18715 22714 11819 11825 22344 22344 0.09751750293912664 KRGRHREK 8 Unmodified _KRGRHREK_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|75|2|sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|75|2|sense MSMS UPN46_class_I_Rep_3 1 533.82763671875 2 533.820673 1065.62679 NaN NaN NaN NaN NaN NaN NaN 12.179 1 12.179 11.679 12.679 0 0 0 0 0.40527 1 47 47 3.5965 0.31518 1 + 18716 24148 11820 11826 22345 22345 0.09660416365545643 KRGRRLPSPG 10 Unmodified _KRGRRLPSPG_ 0 0 0 ENST00000281708.8_1_4:153456099-153456309:-|nuORF ENST00000281708.8_1_4:153456099-153456309:-|nuORF ENST00000281708.8_1_4:153456099-153456309:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 561.688232421875 2 562.343981 1122.67341 0.46312 0.00026043 -0.44852 -0.00025222 0.0146 8.2104E-06 562.3436850517867 82.322 0.073059 85.897 85.853 85.926 3.5753 11 9 2 0 0 0 0.84575 1 19646 19646 2.9952 0.26005 1 42232 18717 6030 11821 11827 22346 22346 0.11697856196815337 KRGRRTRY 8 Unmodified _KRGRRTRY_ 0 0 0 REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|92|3|sense REV__L1MB8_dup5315|chr6:118881648-118884873:+|2.200459501314173|0.0164875828526081|7.06|151.0|92|3|sense MSMS UPN48_class_I_Rep_3 7 546.8262329101562 2 546.828498 1091.64244 NaN NaN NaN NaN NaN NaN NaN 16.443 1 19.991 19.491 20.491 3.5486 0 0 0 0.40746 1 795 795 0.69038 0.088878 1 + 18718 26422 11822 11828 22347 22347 0.10028702882596008 KRGTPDKK 8 Unmodified _KRGTPDKK_ 0 0 0 REV__LRRC8D|p.I775Kfs*3|1|0.13|ENSG00000171492|chr1:89935392-89935392|T/-|frameshift_variant REV__LRRC8D|p.I775Kfs*3|1|0.13|ENSG00000171492|chr1:89935392-89935392|T/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 465.2794189453125 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 79.853 1 83.402 82.902 83.902 3.5487 0 0 0 0.40643 1 19075 19075 2.0598 0.21551 1 + 18719 20409 11823 11829 22348 22348 0.07828295882939074 KRGVFGFY 8 Unmodified _KRGVFGFY_ 0 0 0 REV__L1MEc_dup11828|chr10:43150265-43152011:-|2.4334350034558656|0.0817130060227917|4.9|151.0|123|3|anti-sense REV__L1MEc_dup11828|chr10:43150265-43152011:-|2.4334350034558656|0.0817130060227917|4.9|151.0|123|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.26568603515625 2 487.266345 972.518136 -0.21101 -0.00010282 0.45791 0.00022312 0.2469 0.00012031 487.26640234371143 42.45 1.6287 46.129 45.793 47.422 3.6792 175 105 3 0 0 0 0.82752 1 8943 8943 2.3027 0 1 142590 + 18720 28362 11824 11830 22349 22349 0.03077812342564812 KRHGKQHK 8 Unmodified _KRHGKQHK_ 0 0 0 REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|101|2|sense REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|101|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.80389404296875 2 509.804491 1017.59443 0.3189 0.00016258 -1.1847 -0.00060399 -0.86584 -0.00044141 509.80376399825013 78.28 0.20055 81.902 81.767 81.967 3.6216 44 25 2 0 0 0 0.82752 1 18520 18520 0.69038 0 1 105460 + 18721 29049 11825 11831 22350 22350 0.08633628962547846 KRHILTQGPQ 10 Unmodified _KRHILTQGPQ_ 0 0 0 REV__L1MC5a_dup4866|chr5:291734-292246:-|1.2048377734520217|0.2208073099426182|2.45|151.0|9|2|sense REV__L1MC5a_dup4866|chr5:291734-292246:-|1.2048377734520217|0.2208073099426182|2.45|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 589.3438110351562 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 82.018 1 85.703 85.203 86.203 3.685 0 0 0 0.53105 1 19432 19432 1.4819 0 1 + 18722 27158 11826 11832 22351 22351 0.09147016757151505 KRHKLCHQK 9 Unmodified _KRHKLCHQK_ 0 0 0 L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|57|3|sense L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|57|3|sense L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|57|3|sense MSMS UPN47_class_I_Rep_2 3 589.3430786132812 2 589.340384 1176.66621 NaN NaN NaN NaN NaN NaN NaN 82.738 1 86.136 85.636 86.636 3.3984 0 0 0 0.39518 1 20624 20624 1.8442 1.3195 1 18723 10065 11827 11833 22352 22352 0.0849480032475185 KRHKLCHQK 9 Unmodified _KRHKLCHQK_ 0 0 0 L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|57|3|sense L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|57|3|sense L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|57|3|sense MSMS UPN47_class_I_Rep_2 3 589.34326171875 2 589.340384 1176.66621 NaN NaN NaN NaN NaN NaN NaN 87.765 1 91.212 90.712 91.712 3.4471 0 0 0 0.39518 1 21817 21817 1.8442 1.0506 1 18724 10065 11827 11833 22353 22353 0.0849480032475185 KRHKNMSVHL 10 Unmodified _KRHKNMSVHL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MSMS UPN48_class_I_Rep_1 5 625.3515625 2 625.350948 1248.68734 NaN NaN NaN NaN NaN NaN NaN 71.578 1 75.044 74.544 75.544 3.466 0 0 0 0.53105 1 16744 16744 3.5965 0.60125 1 18725 3252 11828 11834 22354 22354 0.07294765633628231 KRHMYVYI 8 Unmodified _KRHMYVYI_ 0 0 0 L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 555.29931640625 2 555.299862 1108.58517 0.39117 0.00021722 -1.3251 -0.0007358 -0.93388 -0.00051858 555.2991016619171 76.525 0.54591 76.525 76.253 76.799 0 70 50 2 0 0 0 0.82752 2 17840 17840;17877 19.439 2.3524 1 275870 18726 14043 11829 11835 22355;22356 22355 0.035220995619965834 KRHMYVYI 8 Unmodified _KRHMYVYI_ 0 0 0 L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 555.298828125 2 555.299862 1108.58517 NaN NaN NaN NaN NaN NaN NaN 76.377 1 79.792 79.292 80.292 3.4149 0 0 0 0.36148 1 18898 18898 19.439 2.3524 1 18727 14043 11829 11835 22357 22357 0.035220995619965834 KRHMYVYI 8 Unmodified _KRHMYVYI_ 0 0 0 L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 555.29931640625 2 555.299862 1108.58517 NaN NaN NaN NaN NaN NaN NaN 76.484 1 79.805 79.305 80.305 3.3216 0 0 0 0.36148 1 18935 18935 19.439 2.3524 1 18728 14043 11829 11835 22358 22358 0.035220995619965834 KRHMYVYI 8 Unmodified _KRHMYVYI_ 0 0 0 L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|20|3|sense MSMS UPN47_class_I_Rep_3 4 555.2994995117188 2 555.299862 1108.58517 NaN NaN NaN NaN NaN NaN NaN 76.692 1 79.961 79.461 80.461 3.269 0 0 0 0.36148 1 19076 19076 19.439 2.3524 1 18729 14043 11829 11835 22359 22359 0.035220995619965834 KRHREGVRR 9 Unmodified _KRHREGVRR_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|8|1|sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.3590698242188 2 597.357954 1192.70135 0.57418 0.00034299 0.95602 0.00057109 1.5302 0.00091408 597.358345106787 94.91 0.19582 94.91 94.731 94.927 0 36 20 3 0 0 0 0.50088 1 22988 22988 0.52476 0 1 514490 + 18730 25457 11830 11836 22360 22360 0.11271179176924306 KRHREGVRR 9 Unmodified _KRHREGVRR_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|8|1|sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|8|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 597.357954 1192.70135 0.57418 0.00034299 0.95602 0.00057109 1.5302 0.00091408 597.358345106787 94.91 0.19582 94.91 94.731 94.927 0 0.06323 -0.00023721 NaN 0.52476 36 20 3 NaN NaN NaN NaN 0 NaN NaN 0 514490 + 18731 25457 11830 11836 0.11271179176924306 KRHREGVRR 9 Unmodified _KRHREGVRR_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|8|1|sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|8|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 597.357954 1192.70135 0.4161 0.00024856 1.3825 0.00082584 1.7986 0.0010744 597.358665371518 91.157 0.043755 94.783 94.755 94.799 3.626 -0.06323 0.00027229 NaN 0.52476 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 682470 + 18732 25457 11830 11836 0.11271179176924306 KRHSRKKKQHR 11 Unmodified _KRHSRKKKQHR_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.9746398925781 3 496.97467 1487.90218 0.28337 0.00014083 -0.085028 -4.2257E-05 0.19834 9.8569E-05 496.97451206637066 105.94 0.68885 109.65 109.43 110.12 3.7088 251 98 3 0 0 0 0.65891 3 25989 25964;25989;26017 2.4348 1.1051 1 1239800 + 18733 23532 11831 11837 22361;22362;22363 22362 0.17774448493582895 KRHSRKKKQHR 11 Unmodified _KRHSRKKKQHR_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 497.3094177246094 3 496.97467 1487.90218 0.17795 8.8438E-05 0.054928 2.7298E-05 0.23288 0.00011574 496.97460811268064 105.95 0.99429 109.58 109.02 110.02 3.6277 481 133 5 0 0 0 0.67113 3 25418 25418;25575;25604 1.3296 1.3296 1 6490700 + 18734 23532 11831 11837 22364;22365;22366 22364 0.17774448493582895 KRHSRKKKQHR 11 Unmodified _KRHSRKKKQHR_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.9745788574219 3 496.97467 1487.90218 0.1777 8.8314E-05 -0.24106 -0.0001198 -0.063354 -3.1485E-05 496.9745504295587 106.42 0.1841 110.05 110.02 110.2 3.6277 58 26 3 0 0 0 0.67113 1 25640 25640 1.3296 0 1 325270 + 18735 23532 11831 11837 22367 22367 0.17774448493582895 KRHSRKKKQHR 11 Unmodified _KRHSRKKKQHR_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.9748840332031 3 496.97467 1487.90218 0.17767 8.8295E-05 -0.11827 -5.8779E-05 0.059391 2.9516E-05 496.9745238401023 106.61 0.18726 110.24 110.16 110.34 3.6299 49 25 3 0 0 0 0.68081 1 25685 25685 0.45452 0 1 237510 + 18736 23532 11831 11837 22368 22368 0.17774448493582895 KRHSRKKKQHR 11 Unmodified _KRHSRKKKQHR_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.9744567871094 3 496.97467 1487.90218 0.17773 8.8326E-05 0.040848 2.0301E-05 0.21858 0.00010863 497.3089752019198 106.78 0.1073 110.41 110.34 110.45 3.6299 26 14 3 0 0 0 0.67113 1 25716 25716 1.3296 0.82369 1 242760 + 18737 23532 11831 11837 22369 22369 0.17774448493582895 KRHSRKKKQHR 11 Unmodified _KRHSRKKKQHR_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 496.97467 1487.90218 0.25341 0.00012594 0.017657 8.7752E-06 0.27107 0.00013471 496.9744865469363 106.34 0.23644 110.03 109.99 110.23 3.6899 -0.10483 8.0811E-05 NaN 0.45452 64 33 3 NaN NaN NaN NaN 0 NaN NaN 0 554250 + 18738 23532 11831 11837 0.17774448493582895 KRHWQLPIT 9 Unmodified _KRHWQLPIT_ 0 0 0 REV__L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|14|1|sense REV__L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|14|1|sense MSMS UPN47_class_I_Rep_3 4 589.8452758789062 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 84.542 1 87.903 87.403 88.403 3.3615 0 0 0 0.39598 1 21221 21221 1.6526 0.17072 1 + 18739 25823 11832 11838 22370 22370 0.09028222108076989 KRIFVHCW 8 Unmodified _KRIFVHCW_ 0 0 0 L1MA3_dup1679|chr3:114912465-114916365:-|1.3770082651232698|0.0303336523933488|5.5|151.0|81|2|sense L1MA3_dup1679|chr3:114912465-114916365:-|1.3770082651232698|0.0303336523933488|5.5|151.0|81|2|sense L1MA3_dup1679|chr3:114912465-114916365:-|1.3770082651232698|0.0303336523933488|5.5|151.0|81|2|sense MSMS UPN48_class_I_Rep_1 5 544.3345947265625 2 544.794746 1087.57494 NaN NaN NaN NaN NaN NaN NaN 114.86 1 118.49 117.99 118.99 3.6301 0 0 0 0.40738 1 27928 27928 0.79363 0 1 18740 9484 11833 11839 22371 22371 0.034655366274364496 KRIGYNRR 8 Unmodified _KRIGYNRR_ 0 0 0 REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.8175048828125 2 531.817599 1061.62064 0.3232 0.00017189 -0.14698 -7.8165E-05 0.17623 9.372E-05 531.81744139502 81.025 0.061935 81.025 80.966 81.028 0 10 6 2 0 0 0 0.82752 1 19100 19100 0.69038 0 1 121790 + 18741 26415 11834 11840 22372 22372 0.09229898134026371 KRIGYNRR 8 Unmodified _KRIGYNRR_ 0 0 0 REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 531.8178100585938 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 81.586 1 81.586 81.086 82.086 0 0 0 0 0.40746 1 19274 19274 0.69038 0 1 + 18742 26415 11834 11840 22373 22373 0.09229898134026371 KRIGYNRR 8 Unmodified _KRIGYNRR_ 0 0 0 REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 531.817599 1061.62064 0.3232 0.00017189 -0.14698 -7.8165E-05 0.17623 9.372E-05 531.81744139502 81.025 0.061935 81.025 80.966 81.028 0 0.030466 0.00068352 NaN 0.69038 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 121790 + 18743 26415 11834 11840 0.09229898134026371 KRIGYNRR 8 Unmodified _KRIGYNRR_ 0 0 0 REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense REV__L1MB8_dup3971|chr4:99936218-99937035:+|1.16946577926104|0.025949861367518|5.49|151.0|7|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 531.817599 1061.62064 0.37355 0.00019866 -1.1556 -0.00061457 -0.78204 -0.0004159 531.817046207551 77.608 0.59163 81.037 80.926 81.518 3.4289 0.043009 -0.00038928 NaN 0.69038 67 56 2 NaN NaN NaN NaN 0 NaN NaN 0 62380 + 18744 26415 11834 11840 0.09229898134026371 KRIHALTT 8 Unmodified _KRIHALTT_ 0 0 0 ENSG00000130720|ENST00000372338|FIBCD1 ENSG00000130720|ENST00000372338|FIBCD1 ENSG00000130720|ENST00000372338|FIBCD1 MULTI-MSMS UPN47_class_I_Rep_1 2 470.2898254394531 2 470.290351 938.566149 -0.37121 -0.00017458 -0.11427 -5.3742E-05 -0.48548 -0.00022832 470.2901569916425 22.085 0.79638 25.76 25.467 26.263 3.6749 143 76 2 0 0 0 0.82752 1 2587 2587 0.69038 0 1 161680 18745 2672 11835 11841 22374 22374 0.09440886262575532 KRIHFLAV 8 Unmodified _KRIHFLAV_ 0 0 0 REV__ENSG00000188763|ENST00000344575|FZD9 REV__ENSG00000188763|ENST00000344575|FZD9 MULTI-SECPEP UPN47_class_I_Rep_3 4 492.3109436035156 2 492.311087 982.60762 0.10496 5.1675E-05 -1.3004 -0.00064021 -1.1955 -0.00058854 492.3104388389744 58.348 0.17575 61.513 61.399 61.575 3.1658 18 9 2 0 0 0 0.72333 1 13546 13546 5.2307 0 1 72903 + 18746 20983 11836 11842 22375 22375 0.11562067021930034 KRIHKFLIRY 10 Unmodified _KRIHKFLIRY_ 0 0 0 REV__L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|22|2|sense REV__L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 458.6239013671875 3 458.622463 1372.84556 NaN NaN NaN NaN NaN NaN NaN 105.56 1 105.56 105.06 106.06 0 0 0 0 0.53105 1 25749 25749 1.9064 1.2087 1 + 18747 28509 11837 11843 22376 22376 0.17405007884372026 KRIIHYKRVYP 11 Unmodified _KRIIHYKRVYP_ 0 0 0 L1MEf_dup692|chr1:219183931-219185423:-|1.293777787642214|0.1029386430527087|3.65|150.0|30|2|sense L1MEf_dup692|chr1:219183931-219185423:-|1.293777787642214|0.1029386430527087|3.65|150.0|30|2|sense L1MEf_dup692|chr1:219183931-219185423:-|1.293777787642214|0.1029386430527087|3.65|150.0|30|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 491.29876708984375 3 491.633139 1471.87759 0.26656 0.00013105 0.81229 0.00039935 1.0788 0.0005304 491.63349102529287 106.54 0.18572 110.23 110.18 110.37 3.6834 34 25 2 0 0 0 22.551 1 25215 25215 0.45452 0.35968 1 128200 18748 13311 11838 11844 22377 22377 0.16052375567483068 KRIKLDSYHT 10 Unmodified _KRIKLDSYHT_ 0 0 0 L1MB8_dup3246|chr3:138675077-138676024:+|1.5807966303492669|0.0187219693112023|6.4|151.0|27|2|sense L1MB8_dup3246|chr3:138675077-138676024:+|1.5807966303492669|0.0187219693112023|6.4|151.0|27|2|sense L1MB8_dup3246|chr3:138675077-138676024:+|1.5807966303492669|0.0187219693112023|6.4|151.0|27|2|sense MSMS UPN48_class_I_Rep_1 5 630.8591918945312 2 630.856586 1259.69862 NaN NaN NaN NaN NaN NaN NaN 111.21 1 114.85 114.35 115.35 3.6326 0 0 0 0.53105 1 26982 26982 1.6526 1.1279 1 18749 10992 11839 11845 22378 22378 0.07915866208736588 KRIWRFYF 8 Unmodified _KRIWRFYF_ 0 0 0 L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|150|3|anti-sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|150|3|anti-sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.8982238769531 3 405.897704 1214.67128 NaN NaN NaN NaN NaN NaN NaN 36.006 1 39.516 39.016 40.016 3.5101 0 0 0 0.40501 1 5962 5962 3.9444 0 1 18750 11071 11840 11846 22379 22379 0.07253427459022532 KRKAYHKQ 8 Unmodified _KRKAYHKQ_ 0 0 0 REV__L1MB5_dup5667|chr10:102284256-102284953:-|1.1700474700794836|0.0098267222765796|6.9|151.0|13|2|sense REV__L1MB5_dup5667|chr10:102284256-102284953:-|1.1700474700794836|0.0098267222765796|6.9|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.8150024414062 2 529.814525 1057.6145 -0.12999 -6.8868E-05 -0.55504 -0.00029407 -0.68503 -0.00036294 529.8143180215461 23.288 0.53901 26.993 26.66 27.199 3.7042 71 49 2 0 0 0 0.82752 1 2815 2815 2.3027 0.24298 1 72915 + 18751 26075 11841 11847 22380 22380 0.08799379902484361 KRKEKQKPV 9 Unmodified _KRKEKQKPV_ 0 0 0 REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|2|1|sense REV__L1ME3G_dup2580|chr2:241275389-241276276:+|1.7366797942555448|0.2069175341080728|3.07|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.8641967773438 2 570.864215 1139.71388 0.048532 2.7705E-05 -0.41301 -0.00023577 -0.36448 -0.00020807 570.8638198875699 12.781 0.20411 16.169 16.097 16.301 3.388 51 22 3 0 0 0 0.50088 1 183 183 0.52476 0 1 89253 + 18752 28191 11842 11848 22381 22381 0.14960777796591174 KRKGALPL 8 Unmodified _KRKGALPL_ 0 0 0 L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|44|3|sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|44|3|sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|44|3|sense MSMS UPN48_class_I_Rep_1 5 441.7877502441406 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 40.236 1 43.741 43.241 44.241 3.5048 0 0 0 0.40738 1 7199 7199 0.79363 0 1 18753 12154 11843 11849 22382 22382 0.1355437813061826 KRKGILVFGI 10 Unmodified _KRKGILVFGI_ 0 0 0 L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|231|1|anti-sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|231|1|anti-sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|231|1|anti-sense MSMS UPN47_class_I_Rep_1 2 565.7500610351562 2 565.874051 1129.73355 NaN NaN NaN NaN NaN NaN NaN 75.577 1 78.981 78.481 79.481 3.4034 0 0 0 0.53105 1 18663 18663 0.45834 0 1 18754 14714 11844 11850 22383 22383 0.17387153807362665 KRKGKKKKKY 10 Unmodified _KRKGKKKKKY_ 0 0 0 PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|42|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|42|1|anti-sense PRIMA4-int_dup331|chr14:60095602-60096839:-|5.897847008169659|0.2274658342790511|4.7|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_1 2 646.4368896484375 2 646.437881 1290.86121 NaN NaN NaN NaN NaN NaN NaN 110.76 1 114.35 113.85 114.85 3.5835 0 0 0 0.53105 1 27311 27311 0.40072 0.093686 1 18755 16890 11845 11851 22384 22384 0.22741294401407686 KRKGKLKN 8 Unmodified _KRKGKLKN_ 0 0 0 nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL nc|ENSG00000143748|O15381-3|NVL nc|ENSG00000143748|O15381-3|NVL MSMS UPN47_class_I_Rep_3 4 486.3269348144531 2 486.327268 970.639983 NaN NaN NaN NaN NaN NaN NaN 107.12 1 110.66 110.16 111.16 3.5382 0 0 0 0.40746 1 26154 26154 0.69038 0 1 18756 3322 11846 11852 22385 22385 0.15348854424928504 KRKIFLLYIK 10 Unmodified _KRKIFLLYIK_ 0 0 0 REV__Tigger2_dup1312|chr7:92661349-92661791:-|4.10722102909744|0.0110584604462929|8.54|151.0|18|1|anti-sense REV__Tigger2_dup1312|chr7:92661349-92661791:-|4.10722102909744|0.0110584604462929|8.54|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 441.29730224609375 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 92.303 1 95.769 95.269 96.269 3.4652 0 0 0 0.53105 1 22822 22822 0.13989 0 1 + 18757 32629 11847 11853 22386 22386 0.21696544455426192 KRKIIIPQ 8 Unmodified _KRKIIIPQ_ 0 0 0 REV__ENSG00000038219|ENST00000040738|BOD1L1 REV__ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MSMS UPN48_class_I_Rep_1 5 498.33984375 2 498.339844 994.665135 0.18325 9.1318E-05 0.37847 0.00018861 0.56172 0.00027993 498.33993402579875 108.33 0.57871 111.96 111.57 112.15 3.6313 97 50 5 0 0 0 0.82752 1 26194 26194 0.69038 0 1 9216600 + 18758 17641 11848 11854 22387 22387 0.16758909227519325 KRKIKKIILL 10 Unmodified _KRKIKKIILL_ 0 0 0 REV__L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense REV__L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense MSMS UPN47_class_I_Rep_3 4 626.9644775390625 2 626.9632 1251.91185 NaN NaN NaN NaN NaN NaN NaN 38.117 1 41.358 40.858 41.858 3.2414 0 0 0 0.53105 1 7384 7384 0 0 1 + 18759 27769 11849 11855 22388 22388 0.29596823726433286 KRKIKKIILLL 11 Unmodified _KRKIKKIILLL_ 0 0 0 REV__L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense REV__L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense MSMS UPN46_class_I_Rep_3 1 456.0068054199219 3 456.005914 1364.99591 NaN NaN NaN NaN NaN NaN NaN 25.099 1 25.099 24.599 25.599 0 0 0 0 0.38417 1 3392 3392 0 0 1 + 18760 27769 11850 11856 22389 22389 0.3280135482334572 KRKKGKKKKK 10 Unmodified _KRKKGKKKKK_ 0 0 0 REV__AluJr4_dup10166|chr9:41393102-41393366:+|2.236991384249193|0.0832525350192362|4.75|151.0|8|2|sense REV__AluJr4_dup10166|chr9:41393102-41393366:+|2.236991384249193|0.0832525350192362|4.75|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 628.7265625 2 628.953698 1255.89284 NaN NaN NaN NaN NaN NaN NaN 50.544 1 54.172 53.672 54.672 3.6285 0 0 0 0.53105 1 11092 11092 0 0 1 + 18761 17069 11851 11857 22390 22390 0.27513287155352373 KRKKKKFCL 9 Unmodified _KRKKKKFCL_ 0 0 0 REV__AluSx1_dup96394|chr17:29745148-29745458:-|2.695465981881272|0.0666545871685502|5.34|151.0|15|3|sense REV__AluSx1_dup96394|chr17:29745148-29745458:-|2.695465981881272|0.0666545871685502|5.34|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 589.8818359375 2 589.881353 1177.74815 NaN NaN NaN NaN NaN NaN NaN 40.102 1 40.102 39.602 40.602 0 0 0 0 0.4029 1 7763 7763 0 0 1 + 18762 17191 11852 11858 22391 22391 0.16638902683871493 KRKKKKKKSY 10 Unmodified _KRKKKKKKSY_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN46_class_I_Rep_3 1 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.825 1 33.825 33.325 34.325 0 0 0 0 0.53105 1 5964 5964 0.15932 0 1 + 18763 24898 11853 11859 22392 22392 0.22417277055842533 KRKKKKKKSY 10 Unmodified _KRKKKKKKSY_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN46_class_I_Rep_3 1 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 34.479 1 34.479 33.979 34.979 0 0 0 0 0.53105 1 6161 6161 0.15932 0 1 + 18764 24898 11853 11859 22393 22393 0.22417277055842533 KRKKKKKLA 9 Unmodified _KRKKKKKLA_ 0 0 0 REV__AluJb_dup85784|chr12:104618212-104618534:-|1.1471181773868926|0.0078371548682782|7.19|151.0|3|1|sense REV__AluJb_dup85784|chr12:104618212-104618534:-|1.1471181773868926|0.0078371548682782|7.19|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 564.410400390625 2 564.408592 1126.80263 NaN NaN NaN NaN NaN NaN NaN 98.043 1 98.043 97.543 98.543 0 0 0 0 0.4029 1 23868 23868 0 0 1 + 18765 16969 11854 11860 22394 22394 0.24430237826936718 KRKKKKTKRF 10 Unmodified _KRKKKKTKRF_ 0 0 0 REV__AluJb_dup104959|chr17:444656-444951:-|1.4271940556123364|0.1416361800095788|3.33|151.0|10|3|sense REV__AluJb_dup104959|chr17:444656-444951:-|1.4271940556123364|0.1416361800095788|3.33|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 450.114501953125 3 449.973496 1346.89866 NaN NaN NaN NaN NaN NaN NaN 103.18 1 103.18 102.68 103.68 0 0 0 0 0.53105 1 25179 25179 0.15932 0.064481 1 + 18766 16913 11855 11861 22395 22395 0.2390838566700495 KRKKKKTKRF 10 Unmodified _KRKKKKTKRF_ 0 0 0 REV__AluJb_dup104959|chr17:444656-444951:-|1.4271940556123364|0.1416361800095788|3.33|151.0|10|3|sense REV__AluJb_dup104959|chr17:444656-444951:-|1.4271940556123364|0.1416361800095788|3.33|151.0|10|3|sense MSMS UPN48_class_I_Rep_1 5 449.6239013671875 3 449.973496 1346.89866 NaN NaN NaN NaN NaN NaN NaN 100.27 1 103.88 103.38 104.38 3.6084 0 0 0 0.53105 1 24222 24222 0.12286 0 1 + 18767 16913 11855 11861 22396 22396 0.2390838566700495 KRKKQHKKYR 10 Unmodified _KRKKQHKKYR_ 0 0 0 ENST00000370793.5_1_1:78189058-78191329:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33 ENST00000370793.5_1_1:78189058-78191329:-|nuORF ENST00000370793.5_1_1:78189058-78191329:-|nuORF MSMS UPN48_class_I_Rep_2 6 467.2955322265625 3 467.29675 1398.86842 NaN NaN NaN NaN NaN NaN NaN 84.748 1 88.442 87.942 88.942 3.6937 0 0 0 0.53105 1 20162 20162 0.15932 0.064481 1 18768 1170 11856 11862 22397 22397 0.18494027001815994 KRKKRKKLHLR 11 Unmodified _KRKKRKKLHLR_ 0 0 0 REV__AluYe5_dup948|chr12:123426591-123426901:-|1.713223396714033|0.034150339183674|5.65|151.0|11|3|sense REV__AluYe5_dup948|chr12:123426591-123426901:-|1.713223396714033|0.034150339183674|5.65|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 497.9835510253906 3 497.679194 1490.01575 NaN NaN NaN NaN NaN NaN NaN 30.803 1 34.438 33.938 34.938 3.6351 0 0 0 0.38417 1 4559 4559 0 0 1 + 18769 17087 11857 11863 22398 22398 0.2903454360664455 KRKKSYPDD 9 Unmodified _KRKKSYPDD_ 0 0 0 ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A MSMS UPN47_class_I_Rep_2 3 569.2684326171875 2 568.806562 1135.59857 NaN NaN NaN NaN NaN NaN NaN 34.842 1 38.268 37.768 38.768 3.4253 0 0 0 0.39428 1 6350 6350 2.0598 0 1 18770 4847 11858 11864 22399 22399 0.03619628874935188 KRKLAAKK 8 Unmodified _KRKLAAKK_ 0 0 0 REV__Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|7|1|sense REV__Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|7|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 471.7955322265625 2 471.832186 941.649819 0.010096 4.7638E-06 2.2098 0.0010426 2.2199 0.0010474 471.83228600386906 75.907 0.17723 79.164 79.137 79.314 3.2573 21 16 2 0 0 0 0.72333 1 18863 18863 0.69038 0 1 305410 + 18771 17376 11859 11865 22400 22400 0.17666042430312245 KRKLIKNYA 9 Unmodified _KRKLIKNYA_ 0 0 0 L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|172|2|anti-sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|172|2|anti-sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|172|2|anti-sense MSMS UPN48_class_I_Rep_2 6 567.36376953125 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 57.139 1 60.653 60.153 61.153 3.5142 0 0 0 0.40038 1 12333 12333 0.6015 0 1 18772 9383 11860 11866 22401 22401 0.14701679284962665 KRKLLLLLL 9 Unmodified _KRKLLLLLL_ 0 0 0 ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.41064453125 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 24.847 1 24.847 24.347 25.347 0 0 0 0 0.4029 1 3321 3321 0 0 1 18773 6738 11861 11867 22402 22402 0.25593487880951216 KRKLLLLLL 9 Unmodified _KRKLLLLLL_ 0 0 0 ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.2562255859375 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 29.184 1 29.184 28.684 29.684 0 0 0 0 0.4029 1 4585 4585 0 0 1 18774 6738 11861 11867 22403 22403 0.25593487880951216 KRKLLLLLL 9 Unmodified _KRKLLLLLL_ 0 0 0 ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.3035888671875 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 30.244 1 30.244 29.744 30.744 0 0 0 0 0.4029 1 4897 4897 0 0 1 18775 6738 11861 11867 22404 22404 0.25593487880951216 KRKLLLLLL 9 Unmodified _KRKLLLLLL_ 0 0 0 ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.4102783203125 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 118.97 1 122.44 121.94 122.94 3.4793 0 0 0 0.4029 1 29128 29128 0 0 1 18776 6738 11861 11867 22405 22405 0.25593487880951216 KRKLLLLLL 9 Unmodified _KRKLLLLLL_ 0 0 0 ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS UPN48_class_I_Rep_2 6 555.4097290039062 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 110.4 1 114.07 113.57 114.57 3.669 0 0 0 0.4029 1 26267 26267 0 0 1 18777 6738 11861 11867 22406 22406 0.25593487880951216 KRKLYYGKR 9 Unmodified _KRKLYYGKR_ 0 0 0 L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|3|1|sense L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|3|1|sense L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 606.370361328125 2 606.372207 1210.72986 NaN NaN NaN NaN NaN NaN NaN 88.571 1 88.571 88.071 89.071 0 0 0 0 0.4007 1 21276 21276 0.52476 0 1 18778 11573 11862 11868 22407 22407 0.13292484033490837 KRKMYIHL 8 Unmodified _KRKMYIHL_ 0 0 0 REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|10|1|sense REV__L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 544.8255615234375 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.513 1 92.966 92.466 93.466 3.4525 0 0 0 0.40738 1 22239 22239 0.79363 0 1 + 18779 24904 11863 11869 22408 22408 0.09214378833007686 KRKPDIMLPL 10 Unmodified _KRKPDIMLPL_ 0 0 0 ENSG00000117036|ENST00000368192|ETV3 ENSG00000117036|ENST00000368192|ETV3 ENSG00000117036|ENST00000368192|ETV3 MULTI-MSMS UPN47_class_I_Rep_2 3 404.24853515625 3 404.249526 1209.72675 -0.53154 -0.00021487 -1.3066 -0.00052818 -1.8381 -0.00074305 404.5833204159051 52.118 0.37179 55.451 55.274 55.646 3.3332 31 22 2 0 0 0 0.56454 1 11645 11645 0.62683 0.62683 1 51348 18780 2208 11864 11870 22409 22409 0.13027472864496303 KRKPDIMLPL 10 Unmodified _KRKPDIMLPL_ 0 0 0 ENSG00000117036|ENST00000368192|ETV3 ENSG00000117036|ENST00000368192|ETV3 ENSG00000117036|ENST00000368192|ETV3 MSMS UPN47_class_I_Rep_2 3 404.2486572265625 3 404.249526 1209.72675 NaN NaN NaN NaN NaN NaN NaN 52.465 1 55.799 55.299 56.299 3.3332 0 0 0 0.53105 1 11705 11705 0.62683 0.063655 1 18781 2208 11864 11870 22410 22410 0.13027472864496303 KRKPHPPPV 9 Unmodified _KRKPHPPPV_ 0 0 0 REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 528.32861328125 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 73.226 1 76.524 76.024 77.024 3.2971 0 0 0 0.38299 1 17993 17993 4.756 1.4747 1 + 18782 23359 11865 11871 22411 22411 0.11484854424929836 KRKPHPPPV 9 Unmodified _KRKPHPPPV_ 0 0 0 REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 528.2649536132812 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 73.324 1 76.625 76.125 77.125 3.302 0 0 0 0.38299 1 18023 18023 4.756 0.42677 1 + 18783 23359 11865 11871 22412 22412 0.11484854424929836 KRKPHPPPV 9 Unmodified _KRKPHPPPV_ 0 0 0 REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 528.3286743164062 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 73.185 1 76.412 75.912 76.912 3.2271 0 0 0 0.34056 1 18058 18058 8.5933 1.8701 1 + 18784 23359 11865 11871 22413 22413 0.11484854424929836 KRKPHPPPV 9 Unmodified _KRKPHPPPV_ 0 0 0 REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense REV__HAL1_dup14945|chr10:94606737-94607140:-|2.0726745786606577|0.1381559811845659|3.91|150.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 528.2647705078125 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 73.788 1 77.025 76.525 77.525 3.2363 0 0 0 0.38478 1 18241 18241 4.3292 2.2695 1 + 18785 23359 11865 11871 22414 22414 0.11484854424929836 KRKPPRSV 8 Unmodified _KRKPPRSV_ 0 0 0 nc|ENSG00000164920|Q8N2R0-3|OSR2 nc|ENSG00000164920|Q8N2R0-3|OSR2 nc|ENSG00000164920|Q8N2R0-3|OSR2 MSMS UPN46_class_I_Rep_3 1 484.312255859375 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 91.497 1 91.497 90.997 91.997 0 0 0 0 0.40753 1 22106 22106 0.6015 0.076735 1 18786 16737 11866 11872 22415 22415 0.12404281390843153 KRKPPRSV 8 Unmodified _KRKPPRSV_ 0 0 0 nc|ENSG00000164920|Q8N2R0-3|OSR2 nc|ENSG00000164920|Q8N2R0-3|OSR2 nc|ENSG00000164920|Q8N2R0-3|OSR2 MSMS UPN47_class_I_Rep_1 2 484.3119201660156 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 88.39 1 92.047 91.547 92.547 3.6563 0 0 0 0.40625 1 22104 22104 2.3027 1.5091 1 18787 16737 11866 11872 22416 22416 0.12404281390843153 KRKPPRSV 8 Unmodified _KRKPPRSV_ 0 0 0 nc|ENSG00000164920|Q8N2R0-3|OSR2 nc|ENSG00000164920|Q8N2R0-3|OSR2 nc|ENSG00000164920|Q8N2R0-3|OSR2 MSMS UPN48_class_I_Rep_1 5 484.3118591308594 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 88.394 1 92.017 91.517 92.517 3.6229 0 0 0 0.40753 1 21209 21209 0.6015 0.076735 1 18788 16737 11866 11872 22417 22417 0.12404281390843153 KRKQNQKNP 9 Unmodified _KRKQNQKNP_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|38|2|sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|38|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.8331298828125 2 570.833446 1139.65234 -0.14389 -8.2137E-05 0.078564 4.4847E-05 -0.065325 -3.729E-05 570.8336699858983 13.147 0.14076 16.604 16.52 16.661 3.457 24 12 3 0 0 0 0.12444 1 258 258 2.0598 0 1 42915 + 18789 25285 11867 11873 22418 22418 0.08809846097324225 KRKRFKFWRKW 11 Unmodified _KRKRFKFWRKW_ 0 0 0 REV__nc|ENSG00000164542|Q8NCT3|MATCAP2 REV__nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS UPN46_class_I_Rep_3 1 556.0037841796875 3 556.003678 1664.9892 NaN NaN NaN NaN NaN NaN NaN 38.96 1 38.96 38.46 39.46 0 0 0 0 0.38417 1 7456 7456 0 0 1 + 18790 32040 11868 11874 22419 22419 0.1833085471528193 KRKRKFMKLSL 11 Unmodified _KRKRKFMKLSL_ 0 0 0 Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 478.7452087402344 3 478.974508 1433.90169 -0.17087 -8.1841E-05 0.64581 0.00030933 0.47494 0.00022749 479.3091621210511 42.969 0.27608 46.33 46.138 46.414 3.3611 28 18 2 0 0 0 22.551 1 8841 8841 0.094841 0 1 57835 18791 33319 11869 11875 22420 22420 0.2020989272953102 KRKRKFMKLSL 11 Unmodified _KRKRKFMKLSL_ 0 0 0 Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MSMS UPN48_class_I_Rep_2 6 478.97442626953125 3 478.974508 1433.90169 NaN NaN NaN NaN NaN NaN NaN 78.853 1 82.486 81.986 82.986 3.6331 0 0 0 0.38417 1 18714 18714 0.40827 0 1 18792 33319 11869 11875 22421 22421 0.2020989272953102 KRKRKFMKLSL 11 Unmodified _KRKRKFMKLSL_ 0 0 0 Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.30926513671875 3 478.974508 1433.90169 0.13447 6.4407E-05 0.054382 2.6048E-05 0.18885 9.0455E-05 478.9744938500093 42.063 0.8802 45.705 45.241 46.121 3.6415 137 86 2 0 0 0 0.68478 1 7588 7588 0.094841 0 1 363270 18793 33319 11869 11875 22422 22422 0.2020989272953102 KRKRKINQPN 10 Unmodified _KRKRKINQPN_ 0 0 0 REV__HAL1_dup11481|chr8:43065731-43066262:-|1.0109981826141132|0.1188440121266768|3.09|151.0|16|3|sense REV__HAL1_dup11481|chr8:43065731-43066262:-|1.0109981826141132|0.1188440121266768|3.09|151.0|16|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 427.3026123046875 3 427.933588 1280.77894 0.00096386 4.1247E-07 -1.4793 -0.00063306 -1.4784 -0.00063265 427.93305255329574 57.464 0.14507 60.901 60.821 60.966 3.437 21 14 2 0 0 0 0.84575 1 13206 13206 0.77653 0.078866 1 86580 + 18794 23336 11870 11876 22423 22423 0.14977772322458804 KRKRKINQPN 10 Unmodified _KRKRKINQPN_ 0 0 0 REV__HAL1_dup11481|chr8:43065731-43066262:-|1.0109981826141132|0.1188440121266768|3.09|151.0|16|3|sense REV__HAL1_dup11481|chr8:43065731-43066262:-|1.0109981826141132|0.1188440121266768|3.09|151.0|16|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 427.933588 1280.77894 -0.60514 -0.00025896 -0.88026 -0.00037669 -1.4854 -0.00063565 427.93325678967403 58.077 0.36418 61.246 61.057 61.421 3.1681 0.30543 0.00024555 NaN 0.77653 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 169600 + 18795 23336 11870 11876 0.14977772322458804 KRKRKINQPN 10 Unmodified _KRKRKINQPN_ 0 0 0 REV__HAL1_dup11481|chr8:43065731-43066262:-|1.0109981826141132|0.1188440121266768|3.09|151.0|16|3|sense REV__HAL1_dup11481|chr8:43065731-43066262:-|1.0109981826141132|0.1188440121266768|3.09|151.0|16|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 427.933588 1280.77894 0.0061934 2.6504E-06 -0.86309 -0.00036935 -0.8569 -0.0003667 427.9331567813663 57.18 0.046337 60.674 60.636 60.683 3.4942 -0.2661 0.00026759 NaN 0.77653 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 23670 + 18796 23336 11870 11876 0.14977772322458804 KRKRKKNHY 9 Unmodified _KRKRKKNHY_ 0 0 0 REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|34|3|sense REV__L1ME3B_dup5589|chr11:130077946-130079078:-|1.91500916672693|0.020338668582038|6.56|151.0|34|3|sense MSMS UPN47_class_I_Rep_1 2 629.2772216796875 2 629.38618 1256.75781 NaN NaN NaN NaN NaN NaN NaN 41.852 1 45.531 45.031 46.031 3.6792 0 0 0 0.4007 1 8447 8447 0.52476 0.12405 1 + 18797 28064 11871 11877 22424 22424 0.1396980701360917 KRKRKLQKM 9 Unmodified _KRKRKLQKM_ 0 0 0 REV__ENSG00000170903|ENST00000301919|MSANTD4 REV__ENSG00000170903|ENST00000301919|MSANTD4 MULTI-SECPEP UPN48_class_I_Rep_3 7 405.8982849121094 3 405.932531 1214.77576 0.0014733 5.9805E-07 0.033931 1.3774E-05 0.035404 1.4372E-05 405.93244169179684 35.137 0.14915 38.809 38.742 38.891 3.6721 22 16 2 0 0 0 0.12509 1 5670 5670 0.26902 0 1 42859 + 18798 20387 11872 11878 22425 22425 0.17696805944092375 KRKRRKKKGH 10 Unmodified _KRKRRKKKGH_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN47_class_I_Rep_2 3 441.2975769042969 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 62.13 1 65.389 64.889 65.889 3.2594 0 0 0 0.53105 1 14651 14651 0.13989 0.04505 1 18799 5101 11873 11879 22426 22426 0.22148866441534665 KRKRRKRVS 9 Unmodified _KRKRRKRVS_ 0 0 0 REV__ENST00000451166.5_1_22:46452960-46453002:+|nuORF REV__ENST00000451166.5_1_22:46452960-46453002:+|nuORF MSMS UPN47_class_I_Rep_3 4 405.2290954589844 3 405.274057 1212.80034 NaN NaN NaN NaN NaN NaN NaN 45.179 1 48.423 47.923 48.923 3.2441 0 0 0 0.40203 1 9547 9547 0.20686 0 1 + 18800 22389 11874 11880 22427 22427 0.2024520214183667 KRKSRLWLVFY 11 Unmodified _KRKSRLWLVFY_ 0 0 0 REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF MSMS UPN48_class_I_Rep_1 5 499.30206298828125 3 499.301389 1494.88234 NaN NaN NaN NaN NaN NaN NaN 23.813 1 27.379 26.879 27.879 3.5655 0 0 0 0.38417 1 2538 2538 0.50596 0.41111 1 + 18801 22220 11875 11881 22428 22428 0.1546925971026667 KRKTPFLRK 9 Unmodified _KRKTPFLRK_ 0 0 0 THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|6|1|sense THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|6|1|sense THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 587.3814697265625 2 587.382574 1172.7506 NaN NaN NaN NaN NaN NaN NaN 102.09 1 102.09 101.59 102.59 0 0 0 0 0.4007 1 24912 24912 0.52476 0 1 18802 32895 11876 11882 22429 22429 0.17113074413146023 KRKVGALFL 9 Unmodified _KRKVGALFL_ 0 0 0 MER34_dup1109|chr16:24946522-24946921:+|1.1932509002753788|0.1746942457055576|2.77|150.0|26|3|anti-sense MER34_dup1109|chr16:24946522-24946921:+|1.1932509002753788|0.1746942457055576|2.77|150.0|26|3|anti-sense MER34_dup1109|chr16:24946522-24946921:+|1.1932509002753788|0.1746942457055576|2.77|150.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.3383178710938 2 516.339844 1030.66514 NaN NaN NaN NaN NaN NaN NaN 99.577 1 103.03 102.53 103.53 3.4483 0 0 0 0.40038 1 24616 24616 0.6015 0 1 18803 15920 11877 11883 22430 22430 0.1510290922749391 KRKWRGFR 8 Unmodified _KRKWRGFR_ 0 0 0 nc|ENSG00000099869|Q6U949|IGF2-AS nc|ENSG00000099869|Q6U949|IGF2-AS nc|ENSG00000099869|Q6U949|IGF2-AS MSMS UPN47_class_I_Rep_3 4 567.34326171875 2 567.343784 1132.67301 NaN NaN NaN NaN NaN NaN NaN 38.64 1 41.881 41.381 42.381 3.2414 0 0 0 0.40746 1 7546 7546 0.69038 0.088878 1 18804 16647 11878 11884 22431 22431 0.11198481267661009 KRLAAFIL 8 Unmodified _KRLAAFIL_ 0 0 0 MLT1G3_dup1868|chr11:72809154-72809554:+|1.0186438387117696|0.0948169708278974|3.43|151.0|13|3|sense MLT1G3_dup1868|chr11:72809154-72809554:+|1.0186438387117696|0.0948169708278974|3.43|151.0|13|3|sense MLT1G3_dup1868|chr11:72809154-72809554:+|1.0186438387117696|0.0948169708278974|3.43|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 466.30804443359375 2 466.308013 930.601472 0.094885 4.4245E-05 -0.16358 -7.6277E-05 -0.068692 -3.2032E-05 466.3078148257422 49.587 1.0202 53.216 52.85 53.87 3.6291 99 66 3 0 0 0 0.82752 1 9907 9907 26.341 0 1 279500 18805 16419 11879 11885 22432 22432 0.1333954879042949 KRLAKNYFIRN 11 Unmodified _KRLAKNYFIRN_ 0 0 0 REV__Tigger20a_dup469|chr6:42645646-42646026:+|1.525477709465463|0.0577764510256567|4.72|151.0|12|3|sense REV__Tigger20a_dup469|chr6:42645646-42646026:+|1.525477709465463|0.0577764510256567|4.72|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 474.9513244628906 3 474.949127 1421.82555 NaN NaN NaN NaN NaN NaN NaN 102.8 1 106.57 106.07 107.07 3.776 0 0 0 0.38417 1 24291 24291 1.2148 0.70888 1 + 18806 32682 11880 11886 22433 22433 0.13151212153752567 KRLCLWLY 8 Unmodified _KRLCLWLY_ 0 0 0 REV__L1MC5_dup12665|chr15:89182904-89183344:-|1.5854387451715768|0.2263899077101508|2.81|151.0|3|1|sense REV__L1MC5_dup12665|chr15:89182904-89183344:-|1.5854387451715768|0.2263899077101508|2.81|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 547.8146362304688 2 547.812605 1093.61066 NaN NaN NaN NaN NaN NaN NaN 26.86 1 30.626 30.126 31.126 3.7662 0 0 0 0.40738 1 3907 3907 0.79363 0 1 + 18807 27062 11881 11887 22434 22434 0.06759574084458109 KRLFAHINRV 10 Unmodified _KRLFAHINRV_ 0 0 0 REV__LTR73_dup7|chr1:149631198-149631771:-|1.186035218532583|0.016671745692208|6.15|151.0|40|3|anti-sense REV__LTR73_dup7|chr1:149631198-149631771:-|1.186035218532583|0.016671745692208|6.15|151.0|40|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 627.3815307617188 2 627.383106 1252.75166 0.60276 0.00037816 -0.86913 -0.00054528 -0.26637 -0.00016712 627.8839921544555 104.55 0.21893 108.27 108.19 108.41 3.7192 68 30 3 0 0 0 0.56033 1 24717 24717 3.5965 3.5965 1 13918000 + 18808 31003 11882 11888 22435 22435 0.1353928878206716 KRLHDDAI 8 Unmodified _KRLHDDAI_ 0 0 0 REV__nc|ENSG00000133393|Q96NB1-2|CEP20 REV__nc|ENSG00000133393|Q96NB1-2|CEP20 MULTI-SECPEP UPN47_class_I_Rep_1 2 483.74365234375 2 484.269616 966.524678 -0.34552 -0.00016732 -2.3019 -0.0011148 -2.6475 -0.0012821 484.27001050048557 20.915 0.04097 24.559 24.537 24.578 3.6436 5 3 2 0 0 0 0.72333 1 2188 2188 0.69038 0 1 17677 + 18809 31983 11883 11889 22436 22436 0.0400770550326115 KRLHQRFQAWV 11 Unmodified _KRLHQRFQAWV_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-SECPEP UPN47_class_I_Rep_2 3 490.2271728515625 3 490.280988 1467.82114 -0.11132 -5.458E-05 -0.91923 -0.00045068 -1.0306 -0.00050526 490.2805587199879 33.298 0.30188 36.737 36.578 36.88 3.4398 36 24 2 0 0 0 22.551 1 5862 5862 0.45452 0 1 54545 18810 4418 11884 11890 22437 22437 0.10593747730831637 KRLKNLCYI 9 Unmodified _KRLKNLCYI_ 0 0 0 REV__L1MEg_dup10571|chr12:62308625-62310163:+|1.65146112117786|0.0704815939712811|4.55|151.0|6|1|sense REV__L1MEg_dup10571|chr12:62308625-62310163:+|1.65146112117786|0.0704815939712811|4.55|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 576.0261840820312 2 575.841894 1149.66923 NaN NaN NaN NaN NaN NaN NaN 84.304 1 87.666 87.166 88.166 3.3615 0 0 0 0.39326 1 21157 21157 2.3027 0 1 + 18811 28712 11885 11891 22438 22438 0.10038630658914371 KRLKTPGRP 9 Unmodified _KRLKTPGRP_ 0 0 0 REV__L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|3|1|sense REV__L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 526.8381958007812 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 95.004 1 98.48 97.98 98.98 3.4753 0 0 0 0.39518 1 23398 23398 1.8442 1.0506 1 + 18812 28415 11886 11892 22439 22439 0.1376823945365686 KRLLIVLRRI 10 Unmodified _KRLLIVLRRI_ 0 0 0 L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|102|1|anti-sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|102|1|anti-sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|102|1|anti-sense MSMS UPN48_class_I_Rep_2 6 427.3140869140625 3 427.306475 1278.89759 NaN NaN NaN NaN NaN NaN NaN 108.24 1 111.92 111.42 112.42 3.6746 0 0 0 0.53105 1 25647 25647 0.15932 0.01943 1 18813 9063 11887 11893 22440 22440 0.26930171298113237 KRLMKPGA 8 Unmodified _KRLMKPGA_ 0 0 0 L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|80|2|sense L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|80|2|sense L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|80|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 450.27471923828125 2 450.776022 899.537492 0.14985 6.7548E-05 0.35223 0.00015877 0.50207 0.00022632 450.7762321301923 84.335 0.1344 88.029 87.986 88.12 3.6937 30 18 3 0 0 0 0.72333 1 20083 20083 2.3027 0 1 384780 18814 14329 11888 11894 22441 22441 0.08370445361822476 KRLMKPGA 8 Unmodified _KRLMKPGA_ 0 0 0 L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|80|2|sense L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|80|2|sense L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|80|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 450.776022 899.537492 0.024673 1.1122E-05 0.14003 6.3123E-05 0.1647 7.4245E-05 450.7761256629387 84.056 0.6744 87.653 87.629 88.303 3.5973 -0.1878 -2.7883E-05 NaN 2.3027 154 88 3 NaN NaN NaN NaN 0 NaN NaN 0 1579500 18815 14329 11888 11894 0.08370445361822476 KRLPWPPP 8 Unmodified _KRLPWPPP_ 0 0 0 ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|6|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|5|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|2|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|4|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|7|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|1|intron ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|6|intron ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|6|intron MSMS UPN48_class_I_Rep_1 5 495.7965087890625 2 495.797812 989.581071 NaN NaN NaN NaN NaN NaN NaN 115.9 1 119.53 119.03 120.03 3.6282 0 0 0 0.40738 1 28210 28210 0.79363 0.10326 1 18816 3654 11889 11895 22442 22442 0.0858637813059886 KRLQSDQLYQ 10 Unmodified _KRLQSDQLYQ_ 0 0 0 REV__Tigger2_dup2719|chr21:36354601-36355667:-|1.8830550622561544|0.1496015630393097|3.65|151.0|8|1|sense REV__Tigger2_dup2719|chr21:36354601-36355667:-|1.8830550622561544|0.1496015630393097|3.65|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 639.8458251953125 2 639.843676 1277.6728 0.43489 0.00027826 0.3202 0.00020488 0.75509 0.00048314 639.8439802788616 99.056 0.13864 102.66 102.63 102.77 3.6065 28 17 2 0 0 0 0.54822 1 23916 23916 5.7319 0 1 183660 + 18817 32664 11890 11896 22443 22443 0.04506971966475248 KRLRASAA 8 Unmodified _KRLRASAA_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MSMS UPN48_class_I_Rep_1 5 436.7747802734375 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 93.1 1 96.724 96.224 97.224 3.624 0 0 0 0.40746 1 22370 22370 0.69038 0 1 18818 4105 11891 11897 22444 22444 0.0942773294835888 KRLRRQRPK 9 Unmodified _KRLRRQRPK_ 0 0 0 REV__ENST00000263119.9_1_22:24432555-24437617:+|nuORF REV__ENST00000263119.9_1_22:24432555-24437617:+|nuORF MSMS UPN47_class_I_Rep_2 3 619.4048461914062 2 619.407447 1236.80034 NaN NaN NaN NaN NaN NaN NaN 83.926 1 87.338 86.838 87.838 3.4116 0 0 0 0.4007 1 20930 20930 0.52476 0 1 + 18819 21574 11892 11898 22445 22445 0.1914120214180457 KRLRWQLNR 9 Unmodified _KRLRWQLNR_ 0 0 0 ENST00000590996.5_2_17:41329998-41338351:+|nuORF ENST00000590996.5_2_17:41329998-41338351:+|nuORF ENST00000590996.5_2_17:41329998-41338351:+|nuORF MSMS UPN48_class_I_Rep_2 6 635.3856201171875 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 83.052 1 86.733 86.233 87.233 3.6814 0 0 0 0.4007 1 19730 19730 0.52476 0 1 18820 7618 11893 11899 22446 22446 0.1341780701359312 KRLSSKRQM 9 Unmodified _KRLSSKRQM_ 0 0 0 REV__Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|21|2|sense REV__Tigger1_dup4435|chr5:134212153-134213470:+|1.7890287047951847|0.0453680666596056|5.3|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 567.3317260742188 2 567.332224 1132.6499 NaN NaN NaN NaN NaN NaN NaN 80.927 1 84.49 83.99 84.99 3.5624 0 0 0 0.3967 1 19288 19288 1.4819 0 1 + 18821 32446 11894 11900 22447 22447 0.08887674367997533 KRMKIYYG 8 Unmodified _KRMKIYYG_ 0 0 0 L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|17|2|sense L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|17|2|sense L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|17|2|sense MSMS UPN47_class_I_Rep_3 4 529.795654296875 2 529.794412 1057.57427 NaN NaN NaN NaN NaN NaN NaN 29.586 1 32.91 32.41 33.41 3.3235 0 0 0 0.40738 1 4804 4804 0.79363 0.10326 1 18822 8947 11895 11901 22448 22448 0.04778697187703074 KRMRQQWQ 8 Unmodified _KRMRQQWQ_ 0 0 0 REV__nc|ENSG00000215252|A8MQT2-2|GOLGA8B REV__nc|ENSG00000215252|A8MQT2-2|GOLGA8B MSMS UPN46_class_I_Rep_3 1 580.8087768554688 2 580.808916 1159.60328 NaN NaN NaN NaN NaN NaN NaN 101.12 1 101.12 100.62 101.62 0 0 0 0 0.40746 1 24670 24670 0.69038 0.088878 1 + 18823 20549 11896 11902 22449 22449 0.029862345367064336 KRMRRLKFMK 10 Unmodified _KRMRRLKFMK_ 0 0 0 REV__ENST00000480568.1_1:147594391-147596156:-|nuORF REV__ENST00000480568.1_1:147594391-147596156:-|nuORF MSMS UPN48_class_I_Rep_3 7 465.2852478027344 3 465.284688 1392.83223 NaN NaN NaN NaN NaN NaN NaN 80.497 1 84.161 83.661 84.661 3.6635 0 0 0 0.53105 1 19048 19048 0.15932 0.064481 1 + 18824 22562 11897 11903 22450 22450 0.15153110509095313 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 478.974853515625 3 478.974508 1433.90169 0.26371 0.00012631 0.65832 0.00031532 0.92203 0.00044163 478.97476551057736 107.14 0.020264 107.14 107.13 107.15 0 4 2 2 0 0 0 0.68478 1 26140 26140 0.094841 0.094841 1 231960 18825 8218 11898 11904 22451 22451 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.3093566894531 3 478.974508 1433.90169 -0.2201 -0.00010542 0.50185 0.00024037 0.28174 0.00013495 479.30921190893076 41.935 0.32099 45.296 45.07 45.391 3.3611 29 20 2 0 0 0 0.68478 1 8500 8500 0.094841 0 1 79920 18826 8218 11898 11904 22452 22452 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 478.7452087402344 3 478.974508 1433.90169 -0.18512 -8.8667E-05 0.25887 0.00012399 0.073752 3.5325E-05 478.974549930958 42.598 0.40921 45.96 45.799 46.208 3.3611 39 26 2 0 0 0 22.551 1 8763 8763 0.094841 0.094841 1 63566 18827 8218 11898 11904 22453 22453 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9747619628906 3 478.974508 1433.90169 0.12789 6.1257E-05 0.22126 0.00010598 0.34916 0.00016724 478.9745379909629 42.182 1.1537 45.69 45.229 46.383 3.5079 231 105 3 0 0 0 0.68478 1 7746 7746 0.094841 0.094841 1 374240 18828 8218 11898 11904 22454 22454 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.97454833984375 3 478.974508 1433.90169 0.11654 5.5821E-05 0.29327 0.00014047 0.40981 0.00019629 478.9745349349102 50.443 0.63297 53.968 53.594 54.227 3.5246 55 42 2 0 0 0 0.68478 1 10336 10336 0.094841 0.094841 1 114060 18829 8218 11898 11904 22455 22455 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9752502441406 3 478.974508 1433.90169 0.22002 0.00010539 0.26719 0.00012798 0.48721 0.00023336 478.9746575963768 57.78 0.30096 61.274 61.044 61.345 3.4942 40 26 2 0 0 0 0.68478 1 12498 12498 0.094841 0 1 131820 18830 8218 11898 11904 22456 22456 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.97540283203125 3 478.974508 1433.90169 0.10878 5.2104E-05 0.30369 0.00014546 0.41248 0.00019757 478.97462878330435 50.544 0.66916 54.165 53.656 54.325 3.621 55 41 2 0 0 0 0.68478 1 10213 10213 0.094841 0.094841 1 183940 18831 8218 11898 11904 22457 22457 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.56207275390625 3 478.974508 1433.90169 0.1398 6.6961E-05 0.61958 0.00029676 0.75938 0.00036373 478.9748418068281 47.743 0.14354 51.377 51.328 51.471 3.6339 16 9 2 0 0 0 22.551 1 9401 9401 0.094841 0 1 107730 18832 8218 11898 11904 22458 22458 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 478.974508 1433.90169 -0.26077 -0.0001249 0.58976 0.00028248 0.32899 0.00015758 479.30910038106407 41.512 0.46576 45.192 44.901 45.367 3.6792 0.010622 -1.3139E-05 NaN 0.094841 43 32 2 NaN NaN NaN NaN 0 NaN NaN 0 68537 18833 8218 11898 11904 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 478.974508 1433.90169 -0.31772 -0.00015218 1.2258 0.00058715 0.90813 0.00043497 479.30927934831266 41.817 0.13723 45.055 44.98 45.117 3.2372 -0.12622 0.00090087 NaN 0.094841 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 34133 18834 8218 11898 11904 0.20209892729485546 KRMVITFRKKK 11 Unmodified _KRMVITFRKKK_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|136|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 478.974508 1433.90169 0.15119 7.2418E-05 -0.0038577 -1.8477E-06 0.14734 7.057E-05 478.97436636489317 57.735 0.16119 61.267 61.212 61.374 3.5317 -0.0035881 -0.00036607 NaN 0.094841 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 65235 18835 8218 11898 11904 0.20209892729485546 KRNDYLDIY 9 Unmodified _KRNDYLDIY_ 0 0 0 ENST00000486124.5_1_6:31905151-31913001:+|nuORF;nc|ENSG00000166278|P06681-2|C2;nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2 ENST00000486124.5_1_6:31905151-31913001:+|nuORF ENST00000486124.5_1_6:31905151-31913001:+|nuORF MSMS UPN47_class_I_Rep_1 2 600.3065185546875 2 600.306395 1198.59824 NaN NaN NaN NaN NaN NaN NaN 43.74 1 47.435 46.935 47.935 3.6951 0 0 0 0.39036 1 9025 9025 2.9952 0.10602 1 18836 4229 11899 11905 22459 22459 0.006882091551005942 KRNDYLDIY 9 Unmodified _KRNDYLDIY_ 0 0 0 ENST00000486124.5_1_6:31905151-31913001:+|nuORF;nc|ENSG00000166278|P06681-2|C2;nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2 ENST00000486124.5_1_6:31905151-31913001:+|nuORF ENST00000486124.5_1_6:31905151-31913001:+|nuORF MSMS UPN47_class_I_Rep_3 4 600.3052978515625 2 600.306395 1198.59824 NaN NaN NaN NaN NaN NaN NaN 44.068 1 47.312 46.812 47.812 3.2438 0 0 0 0.3824 1 9206 9206 4.897 1.3005 1 18837 4229 11899 11905 22460 22460 0.006882091551005942 KRNFPHRRR 9 Unmodified _KRNFPHRRR_ 0 0 0 LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|42|1|anti-sense LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|42|1|anti-sense LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_3 4 633.87158203125 2 633.873771 1265.73299 NaN NaN NaN NaN NaN NaN NaN 86.28 1 89.652 89.152 90.152 3.3716 0 0 0 0.4007 1 21625 21625 0.52476 0.066424 1 18838 15533 11900 11906 22461 22461 0.11075171930860961 KRNHGRHK 8 Unmodified _KRNHGRHK_ 0 0 0 L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|26|1|sense L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|26|1|sense L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|26|1|sense MSMS UPN48_class_I_Rep_2 6 516.7977905273438 2 516.79974 1031.58493 NaN NaN NaN NaN NaN NaN NaN 32.851 1 36.5 36 37 3.6497 0 0 0 0.40625 1 5119 5119 2.3027 0 1 18839 10053 11901 11907 22462 22462 0.07039860677014076 KRNHRQWTKSD 11 Unmodified _KRNHRQWTKSD_ 0 0 0 REV__L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|9|1|sense REV__L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 485.9233093261719 3 485.923641 1454.74909 NaN NaN NaN NaN NaN NaN NaN 32.468 1 36.158 35.658 36.658 3.6896 0 0 0 0.38417 1 4940 4940 0.50596 0 1 + 18840 30252 11902 11908 22463 22463 0.03990788586452254 KRNNLMFT 8 Unmodified _KRNNLMFT_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|59|3|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|59|3|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|59|3|sense MSMS UPN48_class_I_Rep_2 6 512.2724609375 2 512.273844 1022.53313 NaN NaN NaN NaN NaN NaN NaN 38.887 1 42.617 42.117 43.117 3.7297 0 0 0 0.40625 1 6833 6833 2.3027 0 1 18841 11517 11903 11909 22464 22464 0.022769361482460226 KRNNTNFY 8 Unmodified _KRNNTNFY_ 0 0 0 L1PB_dup303|chr3:138642971-138643306:-|2.1748967401712656|0.0158615568116551|7.1|151.0|11|3|sense L1PB_dup303|chr3:138642971-138643306:-|2.1748967401712656|0.0158615568116551|7.1|151.0|11|3|sense L1PB_dup303|chr3:138642971-138643306:-|2.1748967401712656|0.0158615568116551|7.1|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 528.7647705078125 2 528.764697 1055.51484 NaN NaN NaN NaN NaN NaN NaN 31.832 1 35.131 34.631 35.631 3.2991 0 0 0 0.40625 1 5477 5477 2.3027 0 1 18842 14990 11904 11910 22465 22465 -0.010694825020891585 KRNPHRKDRER 11 Unmodified _KRNPHRKDRER_ 0 0 0 REV__L1PA16_dup12164|chr15:49849892-49852005:+|3.4369386557288006|0.0485668527300011|6.15|151.0|46|3|sense REV__L1PA16_dup12164|chr15:49849892-49852005:+|3.4369386557288006|0.0485668527300011|6.15|151.0|46|3|sense MSMS UPN48_class_I_Rep_2 6 498.2843933105469 3 497.950301 1490.82907 NaN NaN NaN NaN NaN NaN NaN 21.539 1 25.184 24.684 25.684 3.6459 0 0 0 0.38417 1 2050 2050 0.50596 0 1 + 18843 29342 11905 11911 22466 22466 0.1032927498031313 KRNPHRKDRER 11 Unmodified _KRNPHRKDRER_ 0 0 0 REV__L1PA16_dup12164|chr15:49849892-49852005:+|3.4369386557288006|0.0485668527300011|6.15|151.0|46|3|sense REV__L1PA16_dup12164|chr15:49849892-49852005:+|3.4369386557288006|0.0485668527300011|6.15|151.0|46|3|sense MSMS UPN48_class_I_Rep_3 7 498.28497314453125 3 497.950301 1490.82907 NaN NaN NaN NaN NaN NaN NaN 21.735 1 25.449 24.949 25.949 3.7144 0 0 0 0.38417 1 2096 2096 0.50596 0 1 + 18844 29342 11905 11911 22467 22467 0.1032927498031313 KRNQAKWY 8 Unmodified _KRNQAKWY_ 0 0 0 REV__L1MD1_dup5622|chr15:68102036-68102925:-|2.7811986724753224|0.0301312453964965|6.53|151.0|32|3|sense REV__L1MD1_dup5622|chr15:68102036-68102925:-|2.7811986724753224|0.0301312453964965|6.53|151.0|32|3|sense MSMS UPN46_class_I_Rep_3 1 547.2977294921875 2 547.298707 1092.58286 NaN NaN NaN NaN NaN NaN NaN 29.279 1 29.279 28.779 29.779 0 0 0 0 0.40625 1 4614 4614 2.3027 0.4585 1 + 18845 27358 11906 11912 22468 22468 0.04027387148562411 KRPIVKDP 8 Unmodified _KRPIVKDP_ 0 0 0 REV__L1MC1_dup7398|chr9:77781408-77782111:+|1.4669531193008216|0.0099421651164992|7.21|151.0|12|2|sense REV__L1MC1_dup7398|chr9:77781408-77782111:+|1.4669531193008216|0.0099421651164992|7.21|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 476.799560546875 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 112.13 1 112.13 111.63 112.63 0 0 0 0 0.4044 1 27677 27677 4.756 0 1 + 18846 26597 11907 11913 22469 22469 0.10882056922412175 KRPKREPEKKK 11 Unmodified _KRPKREPEKKK_ 0 0 0 REV__L1MB3_dup12291|chr13:21318373-21319017:+|1.0969861595837391|0.0086755003373138|6.98|151.0|5|1|sense REV__L1MB3_dup12291|chr13:21318373-21319017:+|1.0969861595837391|0.0086755003373138|6.98|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 475.2989501953125 3 475.300048 1422.87832 NaN NaN NaN NaN NaN NaN NaN 81.707 1 85.03 84.53 85.53 3.3231 0 0 0 0.38417 1 20458 20458 0.40827 0.31342 1 + 18847 25810 11908 11914 22470 22470 0.18379170216530838 KRPNALYI 8 Unmodified _KRPNALYI_ 0 0 0 REV__HAL1_dup16380|chr12:11790981-11791328:-|1.917975797850269|0.0211612376471349|6.5|151.0|7|2|sense REV__HAL1_dup16380|chr12:11790981-11791328:-|1.917975797850269|0.0211612376471349|6.5|151.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 488.2952575683594 2 487.792727 973.5709 0.20919 0.00010204 -0.092753 -4.5244E-05 0.11644 5.6797E-05 487.79253024161824 31.407 1.1969 34.941 34.563 35.76 3.5342 303 122 3 0 0 0 0.82752 1 4840 4840 2.5775 0 1 597650 + 18848 23367 11909 11915 22471 22471 0.08305770405354451 KRPNPPPV 8 Unmodified _KRPNPPPV_ 0 0 0 nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C nc|ENSG00000137145|Q5VZ89-3|DENND4C nc|ENSG00000137145|Q5VZ89-3|DENND4C MULTI-SECPEP UPN46_class_I_Rep_3 1 452.54547119140625 2 452.771794 903.529036 -0.21136 -9.5699E-05 -2.7221 -0.0012325 -2.9335 -0.0013282 452.77068538446895 23.543 0.060925 23.543 23.509 23.57 0 6 4 2 0 0 0 0.72333 1 2965 2965 0.79363 0 1 34762 18849 3009 11910 11916 22472 22472 0.07341214716848299 KRPPILAAK 9 Unmodified _KRPPILAAK_ 0 0 0 REV__L1MEc_dup11536|chr10:831546-832031:+|2.544516684385471|0.1229470208663431|4.37|151.0|9|2|sense REV__L1MEc_dup11536|chr10:831546-832031:+|2.544516684385471|0.1229470208663431|4.37|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 497.33221435546875 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 116.17 1 119.67 119.17 120.17 3.4965 0 0 0 0.4007 1 28353 28353 0.52476 0.52476 1 + 18850 28354 11911 11917 22473 22473 0.15286622710448228 KRPPILAAK 9 Unmodified _KRPPILAAK_ 0 0 0 REV__L1MEc_dup11536|chr10:831546-832031:+|2.544516684385471|0.1229470208663431|4.37|151.0|9|2|sense REV__L1MEc_dup11536|chr10:831546-832031:+|2.544516684385471|0.1229470208663431|4.37|151.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 497.33203125 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 114.2 1 117.87 117.37 118.37 3.663 0 0 0 0.4007 1 27286 27286 0.52476 0.52476 1 + 18851 28354 11911 11917 22474 22474 0.15286622710448228 KRPQIAKA 8 Unmodified _KRPQIAKA_ 0 0 0 L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|66|3|sense;L1MA5A_dup390|chr2:62925487-62927506:+|2.205494121108387|0.0785532914933416|4.81|150.0|7|1|sense;L1MA6_dup1716|chr5:50772996-50773837:-|1.3973536704468823|0.0289610575994159|5.59|151.0|10|2|sense;L1MA4_dup3452|chr5:138997859-138998118:-|1.0572891958539037|0.0073238649969547|7.17|151.0|7|3|sense;L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|25|3|sense;L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|1|1|sense L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|66|3|sense L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|66|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.2922058105469 2 456.292894 910.571235 -0.48644 -0.00022196 -0.59026 -0.00026933 -1.0767 -0.00049129 456.2925484909019 12.961 0.28649 16.349 16.267 16.553 3.388 46 25 3 0 0 0 0.82752 1 188 188 2.3027 0 1 102040 18852 9681 11912 11918 22475 22475 0.11237190125211782 KRPQQMPLSLL 11 Unmodified _KRPQQMPLSLL_ 0 0 0 REV__ENST00000533826.1_1_11:126278346-126283345:+|nuORF REV__ENST00000533826.1_1_11:126278346-126283345:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.5916748046875 3 437.591952 1309.75403 NaN NaN NaN NaN NaN NaN NaN 89.801 1 93.427 92.927 93.927 3.6255 0 0 0 0.38417 1 21577 21577 0.50596 0 1 + 18853 18425 11913 11919 22476 22476 0.11153956404882592 KRPSGPHWDE 10 Unmodified _KRPSGPHWDE_ 0 0 0 REV__ENST00000527146.1_2_11:308398-308780:+|nuORF REV__ENST00000527146.1_2_11:308398-308780:+|nuORF MSMS UPN48_class_I_Rep_1 5 604.7936401367188 2 604.793986 1207.57342 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.15 116.65 117.65 3.6314 0 0 0 0.53105 1 27579 27579 1.6526 0 1 + 18854 22812 11914 11920 22477 22477 -0.022064259276021403 KRQAWAQV 8 Unmodified _KRQAWAQV_ 0 0 0 REV__ENSG00000125901|ENST00000380325|MRPS26 REV__ENSG00000125901|ENST00000380325|MRPS26 MSMS UPN47_class_I_Rep_1 2 493.7789001464844 2 493.780151 985.545748 NaN NaN NaN NaN NaN NaN NaN 66.397 1 69.755 69.255 70.255 3.3576 0 0 0 0.39996 1 15902 15902 7.9102 2.1783 1 + 18855 18847 11915 11921 22478 22478 0.05239715602795059 KRQAWAQV 8 Unmodified _KRQAWAQV_ 0 0 0 REV__ENSG00000125901|ENST00000380325|MRPS26 REV__ENSG00000125901|ENST00000380325|MRPS26 MULTI-MSMS UPN47_class_I_Rep_2 3 493.779541015625 2 493.780151 985.545748 0.20693 0.00010218 -0.99775 -0.00049267 -0.79082 -0.00039049 493.7795818717527 66.806 0.50057 70.065 69.807 70.308 3.2588 42 36 2 0 0 0 0.82752 1 16039 16039 11.64 2.8949 1 116440 + 18856 18847 11915 11921 22479 22479 0.05239715602795059 KRQAWAQV 8 Unmodified _KRQAWAQV_ 0 0 0 REV__ENSG00000125901|ENST00000380325|MRPS26 REV__ENSG00000125901|ENST00000380325|MRPS26 MSMS UPN47_class_I_Rep_3 4 493.7803039550781 2 493.780151 985.545748 NaN NaN NaN NaN NaN NaN NaN 66.598 1 69.783 69.283 70.283 3.1853 0 0 0 0.4044 1 16073 16073 4.756 0.42677 1 + 18857 18847 11915 11921 22480 22480 0.05239715602795059 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 567.3201904296875 2 567.319306 1132.62406 0.41218 0.00023384 -0.19113 -0.00010843 0.22105 0.00012541 567.3190481444375 46.123 0.7818 49.642 49.244 50.026 3.5192 67 52 2 0 0 0 0.41587 1 8919 8919 7.1017 1.8048 1 185900 18858 404 11916 11922 22481 22481 0.06305103397380662 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 567.319580078125 2 567.319306 1132.62406 0.39979 0.00022681 -0.31613 -0.00017935 0.083655 4.7459E-05 567.3190615782225 45.83 0.77603 49.588 49.175 49.951 3.7579 97 57 2 0 0 0 0.21414 2 8886 8886;8932 19.362 6.2499 1 172590 18859 404 11916 11922 22482;22483 22482 0.06305103397380662 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant ARHGEF3|p.L353Pfs*16|1|0.13|ENSG00000163947|chr3:56732410-56732411|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 567.8209228515625 2 567.319306 1132.62406 0.36984 0.00020982 -0.17237 -9.7789E-05 0.19747 0.00011203 567.3191446277219 45.892 0.82178 49.528 49.193 50.015 3.6369 94 59 2 0 0 0 0.40701 2 8921 8921;8931 7.609 1.8771 1 148750 18860 404 11916 11922 22484;22485 22484 0.06305103397380662 KRQEEHRW 8 Unmodified _KRQEEHRW_ 0 0 0 REV__LTR71A_dup27|chr3:5140823-5141283:-|1.330720147485615|0.039246167829315|5.08|151.0|26|3|anti-sense REV__LTR71A_dup27|chr3:5140823-5141283:-|1.330720147485615|0.039246167829315|5.08|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 584.8012084960938 2 584.802146 1167.58974 NaN NaN NaN NaN NaN NaN NaN 60.107 1 63.272 62.772 63.772 3.1651 0 0 0 0.40746 1 14091 14091 0.69038 0 1 + 18861 31002 11917 11923 22486 22486 0.012647000291281074 KRQGTTKSL 9 Unmodified _KRQGTTKSL_ 0 0 0 REV__MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|24|1|anti-sense REV__MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|24|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 509.8039245605469 2 509.803823 1017.59309 0.31215 0.00015913 -0.0666 -3.3953E-05 0.24555 0.00012518 509.80363952371835 77.331 0.61333 80.943 80.382 80.995 3.6116 118 62 3 0 0 0 0.49026 1 18288 18288 1.6526 0 1 248190 + 18862 31348 11918 11924 22487 22487 0.08499950083125896 KRQGTTKSL 9 Unmodified _KRQGTTKSL_ 0 0 0 REV__MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|24|1|anti-sense REV__MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|24|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 509.803823 1017.59309 0.30406 0.00015501 0.15808 8.0592E-05 0.46214 0.0002356 509.8037110119144 80.827 0.52761 80.827 80.643 81.171 0 -0.021812 0.0001915 NaN 1.6526 124 53 4 NaN NaN NaN NaN 0 NaN NaN 0 478680 + 18863 31348 11918 11924 0.08499950083125896 KRQGTTKSL 9 Unmodified _KRQGTTKSL_ 0 0 0 REV__MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|24|1|anti-sense REV__MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|24|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 509.803823 1017.59309 0.17221 8.7794E-05 -0.10594 -5.4007E-05 0.066274 3.3787E-05 509.80365425271873 77.487 1.1905 80.819 80.169 81.36 3.3315 -0.030132 -7.7695E-05 NaN 1.6526 178 119 2 NaN NaN NaN NaN 0 NaN NaN 0 200640 + 18864 31348 11918 11924 0.08499950083125896 KRQKRGRRR 9 Unmodified _KRQKRGRRR_ 0 0 0 L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|26|2|sense MSMS UPN47_class_I_Rep_3 4 414.26959228515625 3 414.269305 1239.78609 NaN NaN NaN NaN NaN NaN NaN 115.92 1 119.38 118.88 119.88 3.462 0 0 0 0.40177 1 28516 28516 0.26902 0 1 18865 11181 11919 11925 22488 22488 0.1757854971353936 KRQLEEKEKLL 11 Unmodified _KRQLEEKEKLL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-SECPEP UPN47_class_I_Rep_1 2 471.7955627441406 3 471.952314 1412.83511 0.2276 0.00010742 -0.85328 -0.00040271 -0.62568 -0.00029529 471.95179383102106 99.059 0.34465 102.85 102.72 103.06 3.7926 50 46 2 0 0 0 22.551 1 24508 24508 0.45452 0 1 152390 18866 2518 11920 11926 22489 22489 0.14520935648602062 KRQLVEWE 8 Unmodified _KRQLVEWE_ 0 0 0 L1MB4_dup5605|chr10:74528480-74529532:+|1.195994774416141|0.1094416276729099|3.45|151.0|13|2|sense L1MB4_dup5605|chr10:74528480-74529532:+|1.195994774416141|0.1094416276729099|3.45|151.0|13|2|sense L1MB4_dup5605|chr10:74528480-74529532:+|1.195994774416141|0.1094416276729099|3.45|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 544.300048828125 2 544.298373 1086.58219 NaN NaN NaN NaN NaN NaN NaN 28.364 1 31.863 31.363 32.363 3.4986 0 0 0 0.40604 1 4391 4391 2.5775 0.51773 1 18867 10535 11921 11927 22490 22490 0.042365477088424086 KRQPKRRWL 9 Unmodified _KRQPKRRWL_ 0 0 0 ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 MSMS UPN47_class_I_Rep_2 3 634.8792724609375 2 634.396548 1266.77854 NaN NaN NaN NaN NaN NaN NaN 106.61 1 110.15 109.65 110.65 3.5345 0 0 0 0.4007 1 25817 25817 0.52476 0 1 18868 743 11922 11928 22491 22491 0.15582397393268366 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN47_class_I_Rep_1 2 634.8789672851562 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.79 1 110.49 109.99 110.99 3.7088 0 0 0 0.38417 1 26169 26169 1.3295 0.72803 1 + 18869 22943 11923 11929 22492 22492 0.11693046968093768 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN47_class_I_Rep_2 3 634.879150390625 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.87 1 110.4 109.9 110.9 3.5345 0 0 0 0.38417 1 25867 25867 1.3295 0.80477 1 + 18870 22943 11923 11929 22493 22493 0.11693046968093768 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN47_class_I_Rep_2 3 634.87890625 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.96 1 110.5 110 111 3.5345 0 0 0 0.38417 1 25886 25886 1.3295 0.80477 1 + 18871 22943 11923 11929 22494 22494 0.11693046968093768 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN47_class_I_Rep_3 4 634.8785400390625 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.59 1 110.12 109.62 110.62 3.5367 0 0 0 0.38417 1 26052 26052 1.3295 0 1 + 18872 22943 11923 11929 22495 22495 0.11693046968093768 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN47_class_I_Rep_3 4 634.8784790039062 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.93 1 110.47 109.97 110.97 3.5382 0 0 0 0.38417 1 26116 26116 1.3295 1.3295 1 + 18873 22943 11923 11929 22496 22496 0.11693046968093768 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN48_class_I_Rep_2 6 634.8789672851562 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.14 1 109.82 109.32 110.32 3.6834 0 0 0 0.38417 1 25101 25101 1.3295 0 1 + 18874 22943 11923 11929 22497 22497 0.11693046968093768 KRQTWGLPLGL 11 Unmodified _KRQTWGLPLGL_ 0 0 0 REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF REV__ENST00000547275.5_1_12:113658987-113664634:+|nuORF MSMS UPN48_class_I_Rep_3 7 634.878173828125 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.22 1 109.91 109.41 110.41 3.6899 0 0 0 0.38417 1 25055 25055 1.3295 1.3295 1 + 18875 22943 11923 11929 22498 22498 0.11693046968093768 KRQVGLFGLLA 11 Unmodified _KRQVGLFGLLA_ 0 0 0 REV__ENSG00000003393|ENST00000264276|ALS2 REV__ENSG00000003393|ENST00000264276|ALS2 MSMS UPN48_class_I_Rep_3 7 601.375732421875 2 601.374415 1200.73428 NaN NaN NaN NaN NaN NaN NaN 67.552 1 71.059 70.559 71.559 3.5077 0 0 0 0.38417 1 15428 15428 1.1933 0.66858 1 + 18876 17515 11924 11930 22499 22499 0.14193948456431826 KRQWDWMI 8 Unmodified _KRQWDWMI_ 0 0 0 REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|80|3|sense REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|80|3|sense MSMS UPN47_class_I_Rep_1 2 581.7942504882812 2 581.794943 1161.57533 NaN NaN NaN NaN NaN NaN NaN 21.007 1 24.65 24.15 25.15 3.6436 0 0 0 0.40746 1 2210 2210 0.69038 0 1 + 18877 28653 11925 11931 22500 22500 0.00100911556637584 KRQYYYMN 8 Unmodified _KRQYYYMN_ 0 0 0 L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|10|1|sense L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|10|1|sense L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|10|1|sense MSMS UPN48_class_I_Rep_3 7 583.1474609375 2 583.276583 1164.53861 NaN NaN NaN NaN NaN NaN NaN 29.543 1 33.272 32.772 33.772 3.7286 0 0 0 0.40746 1 4155 4155 0.69038 0 1 18878 13312 11926 11932 22501 22501 -0.037073850599426805 KRREKYPA 8 Unmodified _KRREKYPA_ 0 0 0 ENST00000452894.5_2_3:23250266-23365013:+|nuORF;ENST00000427371.3_2_3:23250233-23312451:+|nuORF;ENST00000335798.8_2_3:23244714-23574076:+|nuORF ENST00000452894.5_2_3:23250266-23365013:+|nuORF ENST00000452894.5_2_3:23250266-23365013:+|nuORF MSMS UPN46_class_I_Rep_3 1 523.8396606445312 2 524.306532 1046.59851 NaN NaN NaN NaN NaN NaN NaN 65.779 1 65.779 65.279 66.279 0 0 0 0 0.40738 1 14886 14886 0.79363 0 1 18879 6206 11927 11933 22502 22502 0.07707673665595394 KRRGMKKG 8 Unmodified _KRRGMKKG_ 0 0 0 REV__L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|25|1|sense REV__L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|25|1|sense MSMS UPN47_class_I_Rep_1 2 480.79949951171875 2 480.79782 959.581088 NaN NaN NaN NaN NaN NaN NaN 113.81 1 117.38 116.88 117.88 3.572 0 0 0 0.40746 1 28100 28100 0.69038 0.088878 1 + 18880 25616 11928 11934 22503 22503 0.09968054858973119 KRRHANLAIL 10 Unmodified _KRRHANLAIL_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|147|3|sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|147|3|sense MSMS UPN48_class_I_Rep_2 6 596.3732299804688 2 596.375281 1190.73601 NaN NaN NaN NaN NaN NaN NaN 45.56 1 49.318 48.818 49.818 3.7579 0 0 0 0.53105 1 8809 8809 1.6526 0 1 + 18881 29976 11929 11935 22504 22504 0.14827002265019473 KRRHKRARK 9 Unmodified _KRRHKRARK_ 0 0 0 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 ENSG00000175809|ENST00000323684|CBLL2 MSMS UPN46_class_I_Rep_3 1 618.4041748046875 2 618.405238 1234.79592 NaN NaN NaN NaN NaN NaN NaN 80.757 1 80.757 80.257 81.257 0 0 0 0 0.4007 1 19038 19038 0.52476 0 1 18882 4737 11930 11936 22505 22505 0.18791737718925106 KRRHKRKAIKY 11 Unmodified _KRRHKRKAIKY_ 0 0 0 REV__L1ME1_dup5796|chr3:48949407-48950587:-|1.0024404412542336|0.0212373429698975|5.56|151.0|8|1|sense REV__L1ME1_dup5796|chr3:48949407-48950587:-|1.0024404412542336|0.0212373429698975|5.56|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 495.31829833984375 3 495.319666 1482.93717 NaN NaN NaN NaN NaN NaN NaN 12.059 1 12.059 11.559 12.559 0 0 0 0 0.38417 1 14 14 0.094841 0 1 + 18883 27784 11931 11937 22506 22506 0.2150169130154609 KRRIKPKKVP 10 Unmodified _KRRIKPKKVP_ 0 0 0 REV__ENSG00000137413|ENST00000372977|TAF8 REV__ENSG00000137413|ENST00000372977|TAF8 MULTI-MSMS UPN47_class_I_Rep_3 4 625.4321899414062 2 625.432599 1248.85064 0.51225 0.00032037 -0.86086 -0.00053841 -0.34862 -0.00021804 625.4319222073772 108.01 0.2473 111.55 111.47 111.72 3.5382 44 29 2 0 0 0 0.56486 1 26405 26405 0.40072 0.40072 1 2721900 + 18884 19229 11932 11938 22507 22507 0.23617311746966152 KRRIKPKKVP 10 Unmodified _KRRIKPKKVP_ 0 0 0 REV__ENSG00000137413|ENST00000372977|TAF8 REV__ENSG00000137413|ENST00000372977|TAF8 MULTI-MSMS UPN48_class_I_Rep_3 7 625.4323120117188 2 625.432599 1248.85064 0.59795 0.00037398 -1.0574 -0.00066133 -0.45945 -0.00028735 625.431942278878 107.9 0.23272 111.59 111.36 111.59 3.6813 36 23 3 0 0 0 0.56486 1 25465 25465 0.40072 0.40072 1 7295700 + 18885 19229 11932 11938 22508 22508 0.23617311746966152 KRRKKAKRKRK 11 Unmodified _KRRKKAKRKRK_ 0 0 0 REV__ENSG00000206432|ENST00000383490|TMEM200C REV__ENSG00000206432|ENST00000383490|TMEM200C MSMS UPN48_class_I_Rep_3 7 495.25909423828125 3 495.014577 1482.0219 NaN NaN NaN NaN NaN NaN NaN 28.385 1 32.127 31.627 32.627 3.7424 0 0 0 0.38417 1 3852 3852 0 0 1 + 18886 21232 11933 11939 22509 22509 0.3001706183811166 KRRKQHWR 8 Unmodified _KRRKQHWR_ 0 0 0 REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF MSMS UPN48_class_I_Rep_2 6 597.856689453125 2 597.85759 1193.70063 NaN NaN NaN NaN NaN NaN NaN 83.677 1 87.359 86.859 87.859 3.6814 0 0 0 0.40746 1 19894 19894 0.69038 0 1 + 18887 22483 11934 11940 22510 22510 0.11152384527895265 KRRKRHPLWKW 11 Unmodified _KRRKRHPLWKW_ 0 0 0 L1ME1_dup10988|chr5:179984074-179984784:-|6.184507574320124|0.1837027662121817|5.07|151.0|9|1|sense L1ME1_dup10988|chr5:179984074-179984784:-|6.184507574320124|0.1837027662121817|5.07|151.0|9|1|sense L1ME1_dup10988|chr5:179984074-179984784:-|6.184507574320124|0.1837027662121817|5.07|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 530.3238525390625 3 530.991661 1589.95315 0.27249 0.00014469 0.08903 4.7274E-05 0.36152 0.00019197 530.9915981205185 51.945 0.13452 51.945 51.844 51.979 0 23 15 2 0 0 0 22.551 1 11064 11064 0 0 1 261830 18888 12174 11935 11941 22511 22511 0.18177397538443074 KRRKTNPYLRL 11 Unmodified _KRRKTNPYLRL_ 0 0 0 MamRep137_dup840|chr5:154859919-154860287:-|1.5208230256978457|0.1746838781861566|3.12|151.0|23|2|anti-sense MamRep137_dup840|chr5:154859919-154860287:-|1.5208230256978457|0.1746838781861566|3.12|151.0|23|2|anti-sense MamRep137_dup840|chr5:154859919-154860287:-|1.5208230256978457|0.1746838781861566|3.12|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_1 5 482.29937744140625 3 482.30016 1443.87865 NaN NaN NaN NaN NaN NaN NaN 104.66 1 108.28 107.78 108.78 3.6247 0 0 0 0.38417 1 25215 25215 4.4062 2.3222 1 18889 15744 11936 11942 22512 22512 0.17446589936412238 KRRLEDSKLL 10 Unmodified _KRRLEDSKLL_ 0 0 0 nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000472433.5_1_22:30184624-30209474:-|nuORF;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF nc|ENSG00000100325|Q9H1I8-3|ASCC2 nc|ENSG00000100325|Q9H1I8-3|ASCC2 MSMS UPN47_class_I_Rep_1 2 629.3843994140625 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 69.928 1 73.3 72.8 73.8 3.3713 0 0 0 0.53105 1 16971 16971 2.9952 0.26005 1 18890 1493 11937 11943 22513 22513 0.1383612813419859 KRRLEDSKLL 10 Unmodified _KRRLEDSKLL_ 0 0 0 nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000472433.5_1_22:30184624-30209474:-|nuORF;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF nc|ENSG00000100325|Q9H1I8-3|ASCC2 nc|ENSG00000100325|Q9H1I8-3|ASCC2 MSMS UPN48_class_I_Rep_3 7 629.3842163085938 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 80.144 1 83.807 83.307 84.307 3.6635 0 0 0 0.53105 1 18986 18986 2.9952 0.26005 1 18891 1493 11937 11943 22514 22514 0.1383612813419859 KRRLLILG 8 Unmodified _KRRLLILG_ 0 0 0 ENSG00000185758|ENST00000541814|CLDN24;nc|ENSG00000177300|Q8N7P3|CLDN22 ENSG00000185758|ENST00000541814|CLDN24 ENSG00000185758|ENST00000541814|CLDN24 MULTI-MSMS UPN46_class_I_Rep_3 1 484.8401794433594 2 484.840011 967.665469 0.068385 3.3156E-05 0.015135 7.3383E-06 0.083521 4.0494E-05 484.8400130121393 32.239 0.036423 32.239 32.229 32.265 0 4 2 2 0 0 0 0.82752 1 5497 5497 0 0 1 145620 18892 5119 11938 11944 22515 22515 0.18034328947385347 KRRLLILG 8 Unmodified _KRRLLILG_ 0 0 0 ENSG00000185758|ENST00000541814|CLDN24;nc|ENSG00000177300|Q8N7P3|CLDN22 ENSG00000185758|ENST00000541814|CLDN24 ENSG00000185758|ENST00000541814|CLDN24 MULTI-MSMS UPN47_class_I_Rep_1 2 484.84002685546875 2 484.840011 967.665469 0.25598 0.00012411 0.073287 3.5532E-05 0.32927 0.00015964 484.8399959706125 108.33 0.56304 111.97 111.68 112.24 3.6355 176 57 4 0 0 0 0.82752 2 26553 26553;26643 0 0 1 21927000 18893 5119 11938 11944 22516;22517 22516 0.18034328947385347 KRRLLILG 8 Unmodified _KRRLLILG_ 0 0 0 ENSG00000185758|ENST00000541814|CLDN24;nc|ENSG00000177300|Q8N7P3|CLDN22 ENSG00000185758|ENST00000541814|CLDN24 ENSG00000185758|ENST00000541814|CLDN24 MULTI-MSMS UPN48_class_I_Rep_1 5 484.8403625488281 2 484.840011 967.665469 0.13292 6.4443E-05 0.23656 0.00011469 0.36948 0.00017914 484.8400929000968 108.46 0.23975 112.09 111.95 112.19 3.6313 41 23 3 0 0 0 0.82752 1 26262 26262 0 0 1 10698000 18894 5119 11938 11944 22518 22518 0.18034328947385347 KRRLLILG 8 Unmodified _KRRLLILG_ 0 0 0 ENSG00000185758|ENST00000541814|CLDN24;nc|ENSG00000177300|Q8N7P3|CLDN22 ENSG00000185758|ENST00000541814|CLDN24 ENSG00000185758|ENST00000541814|CLDN24 MULTI-MSMS UPN48_class_I_Rep_3 7 484.8399658203125 2 484.840011 967.665469 0.23073 0.00011186 0.0077358 3.7506E-06 0.23846 0.00011562 484.8399259042568 108.24 0.52369 111.92 111.7 112.23 3.6813 162 52 4 0 0 0 0.82752 1 25604 25604 0 0 1 70307000 18895 5119 11938 11944 22519 22519 0.18034328947385347 KRRLLLKEVI 10 Unmodified _KRRLLLKEVI_ 0 0 0 REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 634.7720947265625 2 634.432264 1266.84998 0.11976 7.5982E-05 0.32017 0.00020313 0.43993 0.00027911 634.432320495936 12.298 0.10144 12.298 12.222 12.323 0 14 11 2 0 0 0 0.84575 1 63 63 0 0 1 19141 + 18896 17840 11939 11945 22520 22520 0.2272247230728226 KRRLRKLAE 9 Unmodified _KRRLRKLAE_ 0 0 0 REV__ENSG00000119986|ENST00000370626|AVPI1 REV__ENSG00000119986|ENST00000370626|AVPI1 MSMS UPN47_class_I_Rep_2 3 585.2385864257812 2 585.383106 1168.75166 NaN NaN NaN NaN NaN NaN NaN 116.76 1 120.25 119.75 120.75 3.4891 0 0 0 0.4029 1 28518 28518 0 0 1 + 18897 18695 11940 11946 22521 22521 0.17403288782111304 KRRNRCKA 8 Unmodified _KRRNRCKA_ 0 0 0 REV__ENSG00000175592|ENST00000312562|FOSL1 REV__ENSG00000175592|ENST00000312562|FOSL1 MSMS UPN47_class_I_Rep_3 4 516.302734375 2 516.303801 1030.59305 NaN NaN NaN NaN NaN NaN NaN 89.327 1 92.72 92.22 93.22 3.3931 0 0 0 0.40746 1 22397 22397 0.69038 0.088878 1 + 18898 20561 11941 11947 22522 22522 0.07897671602154333 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 530.9857177734375 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 99.454 1 102.9 102.4 103.4 3.4483 0 0 0 0.38417 1 24594 24594 0.08335 0.08335 1 18899 16291 11942 11948 22523 22523 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 530.9856567382812 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 98.891 1 102.5 102 103 3.6065 0 0 0 0.38417 1 23869 23869 0.08335 0 1 18900 16291 11942 11948 22524 22524 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 530.9841918945312 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 99.052 1 102.66 102.16 103.16 3.6065 0 0 0 0.38417 1 23911 23911 0.08335 0.08335 1 18901 16291 11942 11948 22525 22525 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 530.9852294921875 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 99.375 1 102.98 102.48 103.48 3.6065 0 0 0 0.38417 1 23991 23991 0.08335 0.08335 1 18902 16291 11942 11948 22526 22526 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 530.9849243164062 3 530.984339 1589.93119 0.42523 0.00022579 1.385 0.00073541 1.8102 0.0009612 531.3193248997231 96.693 0.084427 100.47 100.42 100.51 3.7804 17 10 3 0 0 0 0.68491 1 22976 22976 0.08335 0.08335 1 109850 18903 16291 11942 11948 22527 22527 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 530.9857177734375 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 98.183 1 101.95 101.45 102.45 3.7707 0 0 0 0.38417 1 23325 23325 0.08335 0.08335 1 18904 16291 11942 11948 22528 22528 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 530.98486328125 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 98.829 1 102.6 102.1 103.1 3.7707 0 0 0 0.38417 1 23476 23476 0.08335 0.08335 1 18905 16291 11942 11948 22529 22529 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 530.9852294921875 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 96.835 1 100.74 100.24 101.24 3.9084 0 0 0 0.38417 1 22954 22954 0.08335 0.08335 1 18906 16291 11942 11948 22530 22530 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 530.9840087890625 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 98.099 1 102 101.5 102.5 3.9022 0 0 0 0.38417 1 23246 23246 0.08335 0 1 18907 16291 11942 11948 22531 22531 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 530.9849243164062 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 98.813 1 102.7 102.2 103.2 3.8839 0 0 0 0.38417 1 23411 23411 0.08335 0.08335 1 18908 16291 11942 11948 22532 22532 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 530.9856567382812 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 98.936 1 102.82 102.32 103.32 3.8839 0 0 0 0.38417 1 23439 23439 0.08335 0.08335 1 18909 16291 11942 11948 22533 22533 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 530.9849853515625 3 530.984339 1589.93119 NaN NaN NaN NaN NaN NaN NaN 99.064 1 102.95 102.45 103.45 3.8839 0 0 0 0.38417 1 23471 23471 0.08335 0.08335 1 18910 16291 11942 11948 22534 22534 0.15981985842563518 KRRNRHRQRQR 11 Unmodified _KRRNRHRQRQR_ 0 0 0 MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MLT1C_dup11822|chr10:26554203-26554586:-|2.274186437487737|0.0347541834049349|6.03|151.0|11|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 530.984339 1589.93119 0.33637 0.00017861 1.5027 0.0007979 1.839 0.0009765 530.98487649465 100.77 0.023178 100.77 100.75 100.78 0 0.14707 0.00012296 NaN 0.08335 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 47986 18911 16291 11942 11948 0.15981985842563518 KRRPNKPKLD 10 Unmodified _KRRPNKPKLD_ 0 0 0 REV__L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|178|3|sense REV__L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|178|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3869018554688 2 626.385845 1250.75714 0.49479 0.00030993 4.4596 0.0027934 4.9544 0.0031034 626.8894759475826 105.58 0.19415 109.27 109.21 109.4 3.6901 42 26 2 0 0 0 0.56118 1 24963 24963 2.9952 1.3426 1 383670 + 18912 29805 11943 11949 22535 22535 0.14178967573889167 KRRPPLSHM 9 Unmodified _KRRPPLSHM_ 0 0 0 ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94 ENST00000585105.5_1_17:73482215-73489290:+|nuORF ENST00000585105.5_1_17:73482215-73489290:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 560.7653198242188 2 561.32166 1120.62877 0.50294 0.00028231 -3.4825 -0.0019548 -2.9795 -0.0016725 561.821173545145 33.481 0.057331 37.001 36.971 37.029 3.5201 6 5 2 0 0 0 0.12444 1 5229 5229 2.0598 0 1 42187 18913 4802 11944 11950 22536 22536 0.07327709059154586 KRRPQRRMRK 10 Unmodified _KRRPQRRMRK_ 0 0 0 REV__L1MC1_dup8803|chr10:92323226-92324336:-|1.047722532286527|0.020744491379205|5.66|151.0|25|3|sense REV__L1MC1_dup8803|chr10:92323226-92324336:-|1.047722532286527|0.020744491379205|5.66|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 471.2940979003906 3 471.293234 1410.85787 NaN NaN NaN NaN NaN NaN NaN 66.697 1 70.055 69.555 70.555 3.3576 0 0 0 0.53105 1 15993 15993 0.15932 0 1 + 18914 26613 11945 11951 22537 22537 0.16887721075727313 KRRQYWPWRKN 11 Unmodified _KRRQYWPWRKN_ 0 0 0 RIT1|p.E162Lfs*47|1|0.11|ENSG00000143622|chr1:155900564-155900565|-/AA|frameshift_variant RIT1|p.E162Lfs*47|1|0.11|ENSG00000143622|chr1:155900564-155900565|-/AA|frameshift_variant RIT1|p.E162Lfs*47|1|0.11|ENSG00000143622|chr1:155900564-155900565|-/AA|frameshift_variant MULTI-SECPEP UPN46_class_I_Rep_3 1 539.2985229492188 3 539.967292 1616.88005 0.28576 0.0001543 -0.42534 -0.00022967 -0.13958 -7.5371E-05 539.9665910060783 60.377 0.10999 60.377 60.337 60.447 0 15 13 2 0 0 0 22.551 1 13388 13388 0.08335 0 1 142800 18915 32838 11946 11952 22538 22538 0.09628224025163945 KRRRIWLSRWW 11 Unmodified _KRRRIWLSRWW_ 0 0 0 REV__ENST00000586411.1_1_17:43628025-43635826:-|nuORF REV__ENST00000586411.1_1_17:43628025-43635826:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 548.7615356445312 3 548.323299 1641.94807 0.34681 0.00019016 0.44369 0.00024328 0.7905 0.00043345 548.6579123875787 48.432 0.052021 48.432 48.39 48.442 0 8 5 2 0 0 0 22.551 1 10086 10086 0 0 1 141030 + 18916 23148 11947 11953 22539 22539 0.15277093675808828 KRRRKRRMTKM 11 Unmodified _KRRRKRRMTKM_ 0 0 0 ENST00000456150.5_1_3:47618647-47618728:-|nuORF ENST00000456150.5_1_3:47618647-47618728:-|nuORF ENST00000456150.5_1_3:47618647-47618728:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.3162231445312 3 516.317162 1545.92966 NaN NaN NaN NaN NaN NaN NaN 76.073 1 79.33 78.83 79.83 3.2573 0 0 0 0.38417 1 18901 18901 0.094841 0 1 18917 6831 11948 11954 22540 22540 0.17852892437940682 KRRRPRYRKRL 11 Unmodified _KRRRPRYRKRL_ 0 0 0 nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3 nc|ENSG00000165288|Q6RI45-2|BRWD3 nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN48_class_I_Rep_3 7 529.0094604492188 3 529.009714 1584.00731 NaN NaN NaN NaN NaN NaN NaN 76.534 1 80.117 79.617 80.617 3.5831 0 0 0 0.38417 1 18026 18026 0.08335 0.08335 1 18918 4173 11949 11955 22541 22541 0.23866989690009177 KRRRRLVYAFL 11 Unmodified _KRRRRLVYAFL_ 0 0 0 REV__ENSG00000121871|ENST00000475390|SLITRK3 REV__ENSG00000121871|ENST00000475390|SLITRK3 MULTI-MSMS UPN46_class_I_Rep_3 1 493.2694091796875 3 493.3124 1476.91537 0.27194 0.00013415 -0.54383 -0.00026828 -0.2719 -0.00013413 493.31211133692443 45.449 0.5677 45.449 45.223 45.79 0 93 55 2 0 0 0 0.65439 1 9323 9323 2.8433 1.5136 1 357030 + 18919 18734 11950 11956 22542 22542 0.19598886552989825 KRRRRRKKIAK 11 Unmodified _KRRRRRKKIAK_ 0 0 0 REV__ENSG00000164626|ENST00000359534|KCNK5 REV__ENSG00000164626|ENST00000359534|KCNK5 MSMS UPN47_class_I_Rep_1 2 499.34771728515625 3 499.346326 1495.01715 NaN NaN NaN NaN NaN NaN NaN 97.367 1 101.15 100.65 101.65 3.7861 0 0 0 0.38417 1 24129 24129 0 0 1 + 18920 20071 11951 11957 22543 22543 0.2894417769539359 KRRTPLGS 8 Unmodified _KRRTPLGS_ 0 0 0 REV__ENST00000404141.5_1_7:154753335-154754148:-|nuORF REV__ENST00000404141.5_1_7:154753335-154754148:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 457.77996826171875 2 457.780151 913.545748 -0.12805 -5.8616E-05 0.2677 0.00012255 0.13966 6.3933E-05 457.78024555194435 81.465 0.79707 84.788 84.551 85.348 3.3231 129 86 2 0 0 0 0.82752 1 20485 20485 2.3027 0 1 150530 + 18921 22167 11952 11958 22544 22544 0.08551715602811782 KRRTPTAL 8 Unmodified _KRRTPTAL_ 0 0 0 THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.683 1 64.849 64.349 65.349 3.1667 0 0 0 0.40746 1 14569 14569 0.69038 0 1 18922 32897 11953 11959 22545 22545 0.10392288636876401 KRRTPTAL 8 Unmodified _KRRTPTAL_ 0 0 0 THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7950134277344 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 62.103 1 65.27 64.77 65.77 3.1667 0 0 0 0.40604 1 14699 14699 2.5775 0 1 18923 32897 11953 11959 22546 22546 0.10392288636876401 KRRTPTAL 8 Unmodified _KRRTPTAL_ 0 0 0 THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense THE1B-int_dup173|chr1:117449983-117451521:+|1.043516876911876|0.0768384135823544|3.76|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.79571533203125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.675 1 65.143 64.643 65.643 3.4678 0 0 0 0.40604 1 13742 13742 2.5775 0 1 18924 32897 11953 11959 22547 22547 0.10392288636876401 KRRVEIIG 8 Unmodified _KRRVEIIG_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 485.81243896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 56.617 1 60.074 59.574 60.574 3.4572 0 0 0 0.40404 1 12945 12945 5.2307 0 1 + 18925 27505 11954 11960 22548 22548 0.12232861671009232 KRRVEIIG 8 Unmodified _KRRVEIIG_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 485.8114318847656 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 56.752 1 60.21 59.71 60.71 3.4572 0 0 0 0.40404 1 12985 12985 5.2307 0 1 + 18926 27505 11954 11960 22549 22549 0.12232861671009232 KRRVEIIG 8 Unmodified _KRRVEIIG_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 485.8114013671875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 56.986 1 60.287 59.787 60.787 3.3009 0 0 0 0.40404 1 13087 13087 5.2307 2.6532 1 + 18927 27505 11954 11960 22550 22550 0.12232861671009232 KRRVEIIG 8 Unmodified _KRRVEIIG_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 485.81158447265625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.187 1 60.478 59.978 60.978 3.2912 0 0 0 0.40404 1 13149 13149 5.2307 2.6532 1 + 18928 27505 11954 11960 22551 22551 0.12232861671009232 KRRVEIIG 8 Unmodified _KRRVEIIG_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.089 1 60.257 59.757 60.757 3.1681 0 0 0 0.40404 1 13168 13168 5.2307 0.90143 1 + 18929 27505 11954 11960 22552 22552 0.12232861671009232 KRRVEIIG 8 Unmodified _KRRVEIIG_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.474 1 60.642 60.142 61.142 3.1681 0 0 0 0.40404 1 13285 13285 5.2307 0 1 + 18930 27505 11954 11960 22553 22553 0.12232861671009232 KRRWCPSCCP 10 Unmodified _KRRWCPSCCP_ 0 0 0 ENST00000314471.10_1_19:39847690-39860405:+|nuORF ENST00000314471.10_1_19:39847690-39860405:+|nuORF ENST00000314471.10_1_19:39847690-39860405:+|nuORF MSMS UPN48_class_I_Rep_3 7 618.2854614257812 2 618.283363 1234.55217 NaN NaN NaN NaN NaN NaN NaN 28.292 1 32.034 31.534 32.534 3.7424 0 0 0 0.53105 1 3830 3830 0.40072 0 1 18931 6126 11955 11961 22554 22554 -0.05572173823998128 KRRYFLKY 8 Unmodified _KRRYFLKY_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MSMS UPN46_class_I_Rep_3 1 587.3493041992188 2 587.3482 1172.68185 NaN NaN NaN NaN NaN NaN NaN 39.786 1 39.786 39.286 40.286 0 0 0 0 0.40746 1 7672 7672 0.69038 0 1 + 18932 32091 11956 11962 22555 22555 0.10241410113462734 KRRYMIKRG 9 Unmodified _KRRYMIKRG_ 0 0 0 REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|14|1|sense REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|14|1|sense MSMS UPN47_class_I_Rep_3 4 604.3675537109375 2 604.363859 1206.71316 NaN NaN NaN NaN NaN NaN NaN 97.946 1 101.37 100.87 101.87 3.4216 0 0 0 0.4007 1 24265 24265 0.52476 0.066424 1 + 18933 27630 11957 11963 22556 22556 0.11807659875898935 KRRYVRRKQQQ 11 Unmodified _KRRYVRRKQQQ_ 0 0 0 REV__ENSG00000119403|ENST00000373896|PHF19 REV__ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS UPN48_class_I_Rep_3 7 516.3137817382812 3 515.97808 1544.91241 0.34357 0.00017727 0.22705 0.00011715 0.57062 0.00029443 516.3126546697642 102.64 0.27274 106.42 106.31 106.58 3.776 67 36 2 0 0 0 0.68478 1 24255 24255 0.094841 0 1 311420 + 18934 18671 11958 11964 22557 22557 0.16175011428163089 KRSDKDLF 8 Unmodified _KRSDKDLF_ 0 0 0 REV__ENSG00000197361|ENST00000638704|FBXL22 REV__ENSG00000197361|ENST00000638704|FBXL22 MULTI-SECPEP UPN46_class_I_Rep_3 1 505.2544250488281 2 504.777274 1007.53999 0.15514 7.8311E-05 -0.18235 -9.2047E-05 -0.027213 -1.3736E-05 504.7771102419493 34.54 0.6934 34.54 34.272 34.965 0 84 51 2 0 0 0 0.72333 1 6293 6293 6.7232 6.7232 1 149520 + 18935 21077 11959 11965 22558 22558 0.036525723004729116 KRSGKSGHP 9 Unmodified _KRSGKSGHP_ 0 0 0 L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|168|3|anti-sense;L1PB1_dup8383|chrX:118994701-118996640:+|1.866700953989892|0.1955630066661445|3.25|151.0|106|3|anti-sense;L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|242|2|anti-sense L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|168|3|anti-sense L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|168|3|anti-sense MSMS UPN47_class_I_Rep_2 3 477.268310546875 2 477.267407 952.520262 NaN NaN NaN NaN NaN NaN NaN 107.79 1 111.33 110.83 111.83 3.5345 0 0 0 0.37476 1 26093 26093 6.7232 0.51738 1 18936 14999 11960 11966 22559 22559 0.04210241080374999 KRSHKTALRR 10 Unmodified _KRSHKTALRR_ 0 0 0 REV__ENSG00000158748|ENST00000289753|HTR6 REV__ENSG00000158748|ENST00000289753|HTR6 MSMS UPN48_class_I_Rep_3 7 626.890380859375 2 626.889087 1251.76362 NaN NaN NaN NaN NaN NaN NaN 104.13 1 107.85 107.35 108.35 3.7192 0 0 0 0.53105 1 24583 24583 3.5965 0.60125 1 + 18937 19850 11961 11967 22560 22560 0.14780905525230992 KRSIKRNS 8 Unmodified _KRSIKRNS_ 0 0 0 REV__L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|112|3|sense REV__L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|112|3|sense MSMS UPN48_class_I_Rep_2 6 494.80682373046875 2 494.804157 987.593761 NaN NaN NaN NaN NaN NaN NaN 33.299 1 36.959 36.459 37.459 3.6607 0 0 0 0.40527 1 5239 5239 3.5965 0 1 + 18938 27582 11962 11968 22561 22561 0.09946789522848576 KRSKRNRW 8 Unmodified _KRSKRNRW_ 0 0 0 nc|ENSG00000163081|Q96MF4|CCDC140 nc|ENSG00000163081|Q96MF4|CCDC140 nc|ENSG00000163081|Q96MF4|CCDC140 MSMS UPN46_class_I_Rep_3 1 566.280517578125 2 565.836323 1129.65809 NaN NaN NaN NaN NaN NaN NaN 23.605 1 23.605 23.105 24.105 0 0 0 0 0.40746 1 2988 2988 0.69038 0 1 18939 16733 11963 11969 22562 22562 0.09844989399653059 KRSKVRHS 8 Unmodified _KRSKVRHS_ 0 0 0 L1MEd_dup7876|chr6:32824088-32824908:-|1.3964855196913917|0.4014633946672267|1.8|151.0|15|2|sense L1MEd_dup7876|chr6:32824088-32824908:-|1.3964855196913917|0.4014633946672267|1.8|151.0|15|2|sense L1MEd_dup7876|chr6:32824088-32824908:-|1.3964855196913917|0.4014633946672267|1.8|151.0|15|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 498.8038635253906 2 499.304324 996.594095 0.23035 0.00011502 1.8005 0.00089897 2.0308 0.001014 499.3051386892181 54.899 0.13877 54.899 54.864 55.003 0 23 15 2 0 0 0 0.72333 1 11913 11913 4.756 0 1 353260 18940 13215 11964 11970 22563 22563 0.0956620924271192 KRSPKFVNKY 10 Unmodified _KRSPKFVNKY_ 0 0 0 REV__ORSL-2b_dup107|chr2:237735975-237736387:-|3.241302246334822|0.1746384917285277|4.21|151.0|18|1|anti-sense REV__ORSL-2b_dup107|chr2:237735975-237736387:-|3.241302246334822|0.1746384917285277|4.21|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 633.8723754882812 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 87.571 1 90.958 90.458 91.458 3.3873 0 0 0 0.53105 1 21947 21947 1.4819 0 1 + 18941 32146 11965 11971 22564 22564 0.10220760451056776 KRSQISYHLE 10 Unmodified _KRSQISYHLE_ 0 0 0 L1MEc_dup16143|chr16:29209356-29209932:+|1.544502939973604|0.0897871592852381|4.1|151.0|13|2|sense L1MEc_dup16143|chr16:29209356-29209932:+|1.544502939973604|0.0897871592852381|4.1|151.0|13|2|sense L1MEc_dup16143|chr16:29209356-29209932:+|1.544502939973604|0.0897871592852381|4.1|151.0|13|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 420.8945007324219 3 420.894688 1259.66223 0.098594 4.1498E-05 -0.2329 -9.8026E-05 -0.1343 -5.6528E-05 420.8945647089437 95.502 0.20571 95.502 95.474 95.679 0 26 17 2 0 0 0 0.56072 1 23209 23209 3.3196 0 1 2047800 18942 13043 11966 11972 22565 22565 0.042789893120243505 KRTFSKPKKF 10 Unmodified _KRTFSKPKKF_ 0 0 0 REV__HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|57|1|anti-sense REV__HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_3 7 633.8885498046875 2 633.88769 1265.76083 NaN NaN NaN NaN NaN NaN NaN 85.107 1 88.856 88.356 89.356 3.7494 0 0 0 0.53105 1 20184 20184 2.9952 0 1 + 18943 23388 11967 11973 22566 22566 0.1385763734772354 KRTINRIK 8 Unmodified _KRTINRIK_ 0 0 0 L1M2_dup1600|chr3:87838839-87839601:-|1.217064654777655|0.0051692077118517|7.88|125.0|16|2|sense L1M2_dup1600|chr3:87838839-87839601:-|1.217064654777655|0.0051692077118517|7.88|125.0|16|2|sense L1M2_dup1600|chr3:87838839-87839601:-|1.217064654777655|0.0051692077118517|7.88|125.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 514.839111328125 2 514.838 1027.66145 NaN NaN NaN NaN NaN NaN NaN 53.095 1 56.614 56.114 57.114 3.5192 0 0 0 0.40292 1 11109 11109 6.7232 1.9672 1 18944 8664 11968 11974 22567 22567 0.14872239453643488 KRTKKGHILLK 11 Unmodified _KRTKKGHILLK_ 0 0 0 L1M5_dup39339|chr12:51144334-51144778:+|1.067319296839374|0.0042109306007113|7.99|150.0|16|3|sense L1M5_dup39339|chr12:51144334-51144778:+|1.067319296839374|0.0042109306007113|7.99|150.0|16|3|sense L1M5_dup39339|chr12:51144334-51144778:+|1.067319296839374|0.0042109306007113|7.99|150.0|16|3|sense MSMS UPN48_class_I_Rep_3 7 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.921 1 30.676 30.176 31.176 3.7555 0 0 0 0.38417 1 3472 3472 0.50596 0.41111 1 18945 9155 11969 11975 22568 22568 0.22417277055842533 KRTNVKPK 8 Unmodified _KRTNVKPK_ 0 0 0 REV__L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|31|2|sense REV__L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|31|2|sense MSMS UPN47_class_I_Rep_1 2 485.8124694824219 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.621 1 73.992 73.492 74.492 3.3713 0 0 0 0.40643 1 17171 17171 2.0598 1.2661 1 + 18946 27587 11970 11976 22569 22569 0.12232861670997863 KRTRARINL 9 Unmodified _KRTRARINL_ 0 0 0 REV__L1MB3_dup3186|chr3:56574812-56576287:-|1.0317757640258078|0.0636676630573475|4.02|151.0|7|1|sense REV__L1MB3_dup3186|chr3:56574812-56576287:-|1.0317757640258078|0.0636676630573475|4.02|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 564.3600463867188 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 81.127 1 84.614 84.114 85.114 3.4874 0 0 0 0.4007 1 20236 20236 0.52476 0 1 + 18947 25876 11971 11977 22570 22570 0.14642429230934795 KRTSEKPI 8 Unmodified _KRTSEKPI_ 0 0 0 REV__L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|33|2|sense REV__L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|33|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.7877197265625 2 479.787641 957.56073 0.16049 7.6999E-05 0.033666 1.6152E-05 0.19415 9.3152E-05 479.7875809637698 43.505 0.55804 47.266 46.907 47.465 3.7617 63 44 2 0 0 0 0.82752 1 8204 8204 3.9444 0 1 133000 + 18948 26390 11972 11978 22571 22571 0.0802516268013278 KRTYMKYW 8 Unmodified _KRTYMKYW_ 0 0 0 MER11C_dup417|chr7:128630126-128631187:-|2.8158371676174774|0.2730392627454842|3.37|151.0|11|1|sense MER11C_dup417|chr7:128630126-128631187:-|2.8158371676174774|0.2730392627454842|3.37|151.0|11|1|sense MER11C_dup417|chr7:128630126-128631187:-|2.8158371676174774|0.2730392627454842|3.37|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 588.3058471679688 2 588.305144 1174.59573 NaN NaN NaN NaN NaN NaN NaN 44.077 1 47.716 47.216 48.216 3.6385 0 0 0 0.40604 1 8281 8281 2.5775 0 1 18949 15795 11973 11979 22572 22572 0.015420822164514902 KRVADPTHP 9 Unmodified _KRVADPTHP_ 0 0 0 ENST00000567736.5_1_16:89365554-89366736:-|nuORF ENST00000567736.5_1_16:89365554-89366736:-|nuORF ENST00000567736.5_1_16:89365554-89366736:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 511.23480224609375 2 510.78289 1019.55123 0.26914 0.00013747 -0.15373 -7.8524E-05 0.1154 5.8946E-05 511.28416632045025 37.028 0.15093 40.535 40.477 40.628 3.507 17 14 2 0 0 0 0.12462 1 6262 6262 1.8442 0 1 123600 18950 7498 11974 11980 22573 22573 0.04223394394614388 KRVEDAYIL 9 Unmodified _KRVEDAYIL_ 0 0 0 ENST00000482776.1_1_7:56124009-56126486:+|nuORF;nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A ENST00000482776.1_1_7:56124009-56126486:+|nuORF ENST00000482776.1_1_7:56124009-56126486:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.813232421875 2 553.813856 1105.61316 -0.0072182 -3.9975E-06 -0.19772 -0.0001095 -0.20494 -0.0001135 553.8135359959416 38.539 0.67502 42.205 41.87 42.545 3.6652 62 47 2 0 0 0 0.47763 1 7474 7474 2.9952 0 1 92321 18951 3442 11975 11981 22574 22574 0.06457701023077789 KRVHKILP 8 Unmodified _KRVHKILP_ 0 0 0 Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|62|2|sense Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|62|2|sense Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|62|2|sense MSMS UPN47_class_I_Rep_1 2 496.25933837890625 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 73.993 1 77.379 76.879 77.879 3.3861 0 0 0 0.40738 1 18193 18193 0.79363 0.19213 1 18952 7984 11976 11982 22575 22575 0.15458042430316254 KRVKKFKKFI 10 Unmodified _KRVKKFKKFI_ 0 0 0 Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978515625 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 72.437 1 75.964 75.464 76.464 3.5266 0 0 0 0.53105 1 16884 16884 0.15932 0 1 18953 33377 11977 11983 22576 22576 0.22819366549538245 KRVLKPAIA 9 Unmodified _KRVLKPAIA_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS UPN47_class_I_Rep_1 2 498.34002685546875 2 498.339844 994.665135 0.29152 0.00014527 0.23809 0.00011865 0.5296 0.00026392 498.3398405986416 108.28 0.53719 111.92 111.63 112.16 3.6355 173 50 4 0 0 0 0.50015 1 26533 26533 0.6015 0 1 12836000 18954 3579 11978 11984 22577 22577 0.16758909227507957 KRVMWRRK 8 Unmodified _KRVMWRRK_ 0 0 0 REV__ENSG00000225921|ENST00000451315|NOL7 REV__ENSG00000225921|ENST00000451315|NOL7 MSMS UPN46_class_I_Rep_3 1 579.8986206054688 2 580.353294 1158.69204 NaN NaN NaN NaN NaN NaN NaN 58.578 1 58.578 58.078 59.078 0 0 0 0 0.40746 1 12902 12902 0.69038 0 1 + 18955 21292 11979 11985 22578 22578 0.11903694567035927 KRVPARCI 8 Unmodified _KRVPARCI_ 0 0 0 REV__MER34A1_dup696|chr17:64337766-64338045:+|1.3592244237792674|0.057551166437902|4.56|151.0|3|1|sense REV__MER34A1_dup696|chr17:64337766-64338045:+|1.3592244237792674|0.057551166437902|4.56|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.786921 941.55929 NaN NaN NaN NaN NaN NaN NaN 58.541 1 61.707 61.207 62.207 3.1658 0 0 0 0.40404 1 13610 13610 5.2307 1.2863 1 + 18956 31267 11980 11986 22579 22579 0.08617250110376062 KRVREKVHIT 10 Unmodified _KRVREKVHIT_ 0 0 0 L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|5|1|sense L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|5|1|sense L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 633.406982421875 2 633.39367 1264.77279 NaN NaN NaN NaN NaN NaN NaN 83.145 1 86.684 86.184 87.184 3.5386 0 0 0 0.53105 1 20788 20788 1.4819 0 1 18957 12282 11981 11987 22580 22580 0.15099254090932845 KRVRLPDRGKK 11 Unmodified _KRVRLPDRGKK_ 0 0 0 HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|73|3|sense HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|73|3|sense HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|73|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 451.62445068359375 3 451.624755 1351.85244 0.0059608 2.692E-06 -0.84206 -0.0003803 -0.8361 -0.0003776 451.624278297068 46.658 1.0287 50.177 49.802 50.831 3.5192 83 64 2 0 0 0 0.68478 1 9137 9137 0.094841 0 1 253900 18958 8323 11982 11988 22581 22581 0.1905832076488423 KRVRPLFWH 9 Unmodified _KRVRPLFWH_ 0 0 0 L1MEc_dup16477|chr17:19908165-19908648:-|1.110190684992637|0.2222567054476574|2.32|151.0|34|3|anti-sense L1MEc_dup16477|chr17:19908165-19908648:-|1.110190684992637|0.2222567054476574|2.32|151.0|34|3|anti-sense L1MEc_dup16477|chr17:19908165-19908648:-|1.110190684992637|0.2222567054476574|2.32|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_2 3 619.8697509765625 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 85.576 1 89.009 88.509 89.509 3.4329 0 0 0 0.40038 1 21290 21290 0.6015 0.076735 1 18959 13048 11983 11989 22582 22582 0.11027921098911975 KRVRPLFWH 9 Unmodified _KRVRPLFWH_ 0 0 0 L1MEc_dup16477|chr17:19908165-19908648:-|1.110190684992637|0.2222567054476574|2.32|151.0|34|3|anti-sense L1MEc_dup16477|chr17:19908165-19908648:-|1.110190684992637|0.2222567054476574|2.32|151.0|34|3|anti-sense L1MEc_dup16477|chr17:19908165-19908648:-|1.110190684992637|0.2222567054476574|2.32|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8696899414062 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 85.774 1 89.48 88.98 89.98 3.7058 0 0 0 0.40038 1 20410 20410 0.6015 0.076735 1 18960 13048 11983 11989 22583 22583 0.11027921098911975 KRVSFWCFY 9 Unmodified _KRVSFWCFY_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|312|2|anti-sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|312|2|anti-sense MSMS UPN47_class_I_Rep_2 3 618.3052978515625 2 618.305144 1234.59573 NaN NaN NaN NaN NaN NaN NaN 56.251 1 59.551 59.051 60.051 3.3009 0 0 0 0.40038 1 12862 12862 0.6015 0 1 + 18961 24781 11984 11990 22584 22584 -0.012179177835605515 KRVVKKKP 8 Unmodified _KRVVKKKP_ 0 0 0 REV__LTR70_dup111|chr19:21825238-21825771:-|2.0836500770846347|0.1284612524367389|4.02|151.0|35|3|anti-sense REV__LTR70_dup111|chr19:21825238-21825771:-|2.0836500770846347|0.1284612524367389|4.02|151.0|35|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.847900390625 2 491.847836 981.681119 0.24365 0.00011984 0.30159 0.00014833 0.54523 0.00026817 491.8478649191183 108.31 0.46485 111.99 111.76 112.23 3.6813 69 46 2 0 0 0 0.82752 1 25654 25654 0.69038 0 1 3628800 + 18962 30997 11985 11991 22585 22585 0.18954615464417657 KRVVPKKP 8 Unmodified _KRVVPKKP_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN46_class_I_Rep_3 1 476.3260498046875 2 476.326737 950.63892 0.020433 9.7326E-06 -0.60051 -0.00028604 -0.58008 -0.00027631 476.3261661992925 31.124 0.043486 31.124 31.098 31.141 0 5 3 2 0 0 0 0.82752 1 5164 5164 0.69038 0.69038 1 75119 18963 2915 11986 11992 22586 22586 0.161626400560408 KRVWHALLPQ 10 Unmodified _KRVWHALLPQ_ 0 0 0 HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|81|1|anti-sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|81|1|anti-sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|81|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.3712768554688 2 624.372207 1246.72986 0.60343 0.00037676 -0.82488 -0.00051503 -0.22145 -0.00013827 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.56333 1 21788 21788 1.4819 0.15237 1 1749400 18964 8190 11987 11993 22587 22587 0.11636484033510897 KRWCGMWY 8 Unmodified _KRWCGMWY_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MSMS UPN47_class_I_Rep_3 4 565.2584838867188 2 565.257139 1128.49973 NaN NaN NaN NaN NaN NaN NaN 113.68 1 117.18 116.68 117.68 3.4963 0 0 0 0.40738 1 27893 27893 0.79363 0.10326 1 + 18965 18653 11988 11994 22588 22588 -0.059383888952879715 KRWFFGKVK 9 Unmodified _KRWFFGKVK_ 0 0 0 L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense MSMS UPN47_class_I_Rep_3 4 598.3591918945312 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 84.371 1 87.733 87.233 88.233 3.3615 0 0 0 0.4007 1 21178 21178 0.52476 0.066424 1 18966 9355 11989 11995 22589 22589 0.11302000493128617 KRWFFGKVK 9 Unmodified _KRWFFGKVK_ 0 0 0 L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense MSMS UPN48_class_I_Rep_2 6 598.3590698242188 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 77.55 1 81.161 80.661 81.661 3.6116 0 0 0 0.4007 1 18361 18361 0.52476 0 1 18967 9355 11989 11995 22590 22590 0.11302000493128617 KRWGSRWPM 9 Unmodified _KRWGSRWPM_ 0 0 0 REV__nc|ENSG00000169660|Q8WVB3-2|HEXD REV__nc|ENSG00000169660|Q8WVB3-2|HEXD MSMS UPN47_class_I_Rep_3 4 401.8776550292969 3 401.878315 1202.61312 NaN NaN NaN NaN NaN NaN NaN 15.02 1 18.386 17.886 18.886 3.3659 0 0 0 0.40038 1 685 685 0.26902 0 1 + 18968 32054 11990 11996 22591 22591 0.019914225421189258 KRWLRALMRQK 11 Unmodified _KRWLRALMRQK_ 0 0 0 REV__L1PA12_dup1301|chr11:72914314-72915540:+|2.6424602169424896|0.0224253008530176|6.88|151.0|10|1|sense REV__L1PA12_dup1301|chr11:72914314-72915540:+|2.6424602169424896|0.0224253008530176|6.88|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 495.802734375 3 495.969757 1484.88744 0.17326 8.5934E-05 0.68246 0.00033848 0.85572 0.00042441 495.97023236509904 107.74 0.029465 111.37 111.36 111.39 3.6313 4 2 2 0 0 0 0.62008 1 25984 25984 4.7159 0 1 1008200 + 18969 29054 11991 11997 22592 22592 0.16439240301201608 KRWMRLLL 8 Unmodified _KRWMRLLL_ 0 0 0 ENST00000305850.9_1_16:81040857-81045584:+|nuORF;ENST00000564669.5_1_16:81041001-81045584:+|nuORF ENST00000305850.9_1_16:81040857-81045584:+|nuORF ENST00000305850.9_1_16:81040857-81045584:+|nuORF MSMS UPN48_class_I_Rep_1 5 558.348876953125 2 558.347146 1114.67974 NaN NaN NaN NaN NaN NaN NaN 96.94 1 100.55 100.05 101.05 3.6088 0 0 0 0.40746 1 23379 23379 0.69038 0 1 18970 6088 11992 11998 22593 22593 0.1269865810400006 KRWRHRRC 8 Unmodified _KRWRHRRC_ 0 0 0 REV__L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|7|1|sense REV__L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 599.3364868164062 2 599.335967 1196.65738 NaN NaN NaN NaN NaN NaN NaN 51.399 1 55.01 54.51 55.51 3.6105 0 0 0 0.40746 1 10529 10529 0.69038 0.088878 1 + 18971 30664 11993 11999 22594 22594 0.0669187147896082 KRYHALYY 8 Unmodified _KRYHALYY_ 0 0 0 REV__MER58B_dup2488|chr6:72787094-72787427:+|1.6685355307445713|0.0030468454677518|9.1|150.0|13|3|sense REV__MER58B_dup2488|chr6:72787094-72787427:+|1.6685355307445713|0.0030468454677518|9.1|150.0|13|3|sense MSMS UPN48_class_I_Rep_1 5 557.2951049804688 2 557.295633 1112.57671 NaN NaN NaN NaN NaN NaN NaN 82.862 1 86.449 85.949 86.949 3.5871 0 0 0 0.36148 1 19802 19802 19.439 3.5918 1 + 18972 31466 11994 12000 22595 22595 0.024928689170110374 KRYHALYY 8 Unmodified _KRYHALYY_ 0 0 0 REV__MER58B_dup2488|chr6:72787094-72787427:+|1.6685355307445713|0.0030468454677518|9.1|150.0|13|3|sense REV__MER58B_dup2488|chr6:72787094-72787427:+|1.6685355307445713|0.0030468454677518|9.1|150.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.295654296875 2 557.295633 1112.57671 0.49441 0.00027553 -1.0667 -0.00059449 -0.57234 -0.00031896 557.2949885399734 82.684 0.19339 86.353 86.225 86.418 3.669 35 23 2 0 0 0 0.82752 1 19655 19655 13.508 2.684 1 127940 + 18973 31466 11994 12000 22596 22596 0.024928689170110374 KRYKKQVF 8 Unmodified _KRYKKQVF_ 0 0 0 REV__L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|39|3|sense REV__L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 548.8350219726562 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 31.959 1 31.959 31.459 32.459 0 0 0 0 0.40746 1 5407 5407 0.69038 0 1 + 18974 26964 11995 12001 22597 22597 0.11129721222141598 KRYKNANWNIK 11 Unmodified _KRYKNANWNIK_ 0 0 0 L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|56|3|sense L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|56|3|sense L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|56|3|sense MSMS UPN47_class_I_Rep_3 4 478.9747314453125 3 478.936999 1433.78917 NaN NaN NaN NaN NaN NaN NaN 45.606 1 48.851 48.351 49.351 3.2441 0 0 0 0.38417 1 9679 9679 1.2148 0.51716 1 18975 9994 11996 12002 22598 22598 0.08962335257024279 KRYNYRYHQKS 11 Unmodified _KRYNYRYHQKS_ 0 0 0 REV__L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|77|3|sense REV__L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|77|3|sense MSMS UPN46_class_I_Rep_3 1 514.9337158203125 3 514.935658 1541.78514 NaN NaN NaN NaN NaN NaN NaN 81.97 1 81.97 81.47 82.47 0 0 0 0 0.38417 1 19389 19389 0.36667 0.27183 1 + 18976 24279 11997 12003 22599 22599 0.03592245763297797 KRYPQKKKY 9 Unmodified _KRYPQKKKY_ 0 0 0 REV__L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|43|1|sense REV__L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|43|1|sense MSMS UPN48_class_I_Rep_1 5 619.8692016601562 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.079 1 90.698 90.198 91.198 3.6187 0 0 0 0.39518 1 20863 20863 1.8442 0.36234 1 + 18977 30156 11998 12004 22600 22600 0.1201706431365892 KRYRIVKW 8 Unmodified _KRYRIVKW_ 0 0 0 HAL1ME_dup2661|chr5:32424649-32424921:+|1.0506233216839636|0.0137565117632709|6.25|151.0|9|3|sense HAL1ME_dup2661|chr5:32424649-32424921:+|1.0506233216839636|0.0137565117632709|6.25|151.0|9|3|sense HAL1ME_dup2661|chr5:32424649-32424921:+|1.0506233216839636|0.0137565117632709|6.25|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 574.7938232421875 2 574.856193 1147.69783 NaN NaN NaN NaN NaN NaN NaN 62.654 1 66.165 65.665 66.665 3.5104 0 0 0 0.40746 1 13944 13944 0.69038 0 1 18978 7959 11999 12005 22601 22601 0.1298911635035438 KRYRRKLK 8 Unmodified _KRYRRKLK_ 0 0 0 ENSG00000162817|ENST00000294889|C1orf115 ENSG00000162817|ENST00000294889|C1orf115 ENSG00000162817|ENST00000294889|C1orf115 MSMS UPN47_class_I_Rep_2 3 574.3800048828125 2 574.380366 1146.74618 NaN NaN NaN NaN NaN NaN NaN 91.178 1 94.64 94.14 95.14 3.4613 0 0 0 0.40746 1 22583 22583 0.69038 0 1 18979 3963 12000 12006 22602 22602 0.17867609990253186 KRYRSKRSKII 11 Unmodified _KRYRSKRSKII_ 0 0 0 L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|30|2|sense L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|30|2|sense L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|30|2|sense MSMS UPN48_class_I_Rep_2 6 478.6779479980469 3 478.972043 1433.8943 NaN NaN NaN NaN NaN NaN NaN 69.155 1 72.677 72.177 73.177 3.5216 0 0 0 0.38417 1 16001 16001 0.40827 0 1 18980 10228 12001 12007 22603 22603 0.19470876453442543 KSADGDNVL 9 Unmodified _KSADGDNVL_ 0 0 0 REV__nc|ENSG00000183337|Q6W2J9-4|BCOR REV__nc|ENSG00000183337|Q6W2J9-4|BCOR MULTI-MSMS UPN47_class_I_Rep_2 3 459.72979736328125 2 459.729989 917.445425 -0.45093 -0.00020731 0.18433 8.4743E-05 -0.2666 -0.00012257 459.7300167729802 28.682 0.61712 32.181 31.91 32.527 3.4986 83 48 2 0 0 0 0.37599 1 4507 4507 9.3831 0.035688 1 108040 + 18981 20782 12002 12008 22604 22604 -0.01659986241520528 KSADGDNVL 9 Unmodified _KSADGDNVL_ 0 0 0 REV__nc|ENSG00000183337|Q6W2J9-4|BCOR REV__nc|ENSG00000183337|Q6W2J9-4|BCOR MULTI-MATCH UPN47_class_I_Rep_1 2 2 459.729989 917.445425 -0.37031 -0.00017024 0.32267 0.00014834 -0.047639 -2.1901E-05 459.73001767387655 28.519 0.66662 32.285 32.039 32.706 3.7662 0.069269 -3.0969E-06 NaN 9.3831 74 57 2 NaN NaN NaN NaN 0 NaN NaN 0 105230 + 18982 20782 12002 12008 -0.01659986241520528 KSADGDNVL 9 Unmodified _KSADGDNVL_ 0 0 0 REV__nc|ENSG00000183337|Q6W2J9-4|BCOR REV__nc|ENSG00000183337|Q6W2J9-4|BCOR MULTI-MATCH UPN47_class_I_Rep_3 4 2 459.729989 917.445425 -0.78338 -0.00036014 0.48412 0.00022256 -0.29927 -0.00013758 459.73013290864657 28.848 0.62789 32.181 31.882 32.51 3.3338 -0.034267 0.00014534 NaN 9.3831 92 51 2 NaN NaN NaN NaN 0 NaN NaN 0 102980 + 18983 20782 12002 12008 -0.01659986241520528 KSAFQAQTII 10 Unmodified _KSAFQAQTII_ 0 0 0 L1ME3Cz_dup5295|chr7:77945681-77946608:+|2.399882999763457|0.4714377349622712|2.35|151.0|54|2|anti-sense L1ME3Cz_dup5295|chr7:77945681-77946608:+|2.399882999763457|0.4714377349622712|2.35|151.0|54|2|anti-sense L1ME3Cz_dup5295|chr7:77945681-77946608:+|2.399882999763457|0.4714377349622712|2.35|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3065185546875 2 553.813856 1105.61316 -0.0072182 -3.9975E-06 -0.19772 -0.0001095 -0.20494 -0.0001135 553.8135359959416 38.539 0.67502 42.205 41.87 42.545 3.6652 62 47 2 0 0 0 0.35325 1 7426 7426 23.79 1.0535 1 92321 18984 12782 12003 12009 22605 22605 0.06457701023100526 KSALLLRRRE 10 Unmodified _KSALLLRRRE_ 0 0 0 REV__ENST00000596900.5_1_19:41036434-41060733:+|nuORF REV__ENST00000596900.5_1_19:41036434-41060733:+|nuORF MSMS UPN46_class_I_Rep_3 1 621.393310546875 2 621.39367 1240.77279 NaN NaN NaN NaN NaN NaN NaN 101.67 1 101.67 101.17 102.17 0 0 0 0 0.53105 1 24806 24806 0.35063 0 1 + 18985 19886 12004 12010 22606 22606 0.1620325409094221 KSAWSWAF 8 Unmodified _KSAWSWAF_ 0 0 0 L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|263|3|anti-sense L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|263|3|anti-sense L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|263|3|anti-sense MSMS UPN48_class_I_Rep_3 7 491.2668762207031 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 38.995 1 42.651 42.151 43.151 3.6557 0 0 0 0.40527 1 6767 6767 3.5965 0 1 18986 14981 12005 12011 22607 22607 -0.020624669284416086 KSCECDCD 8 Unmodified _KSCECDCD_ 0 0 0 ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG ENSG00000188162|ENST00000399397|OTOG ENSG00000188162|ENST00000399397|OTOG MSMS UPN48_class_I_Rep_1 5 451.6374206542969 2 451.638071 901.261589 NaN NaN NaN NaN NaN NaN NaN 32.003 1 35.538 35.038 36.038 3.5342 0 0 0 0.40753 1 4808 4808 0.6015 0.6015 1 18987 5221 12006 12012 22608 22608 -0.19299162330560193 KSCECDCD 8 Unmodified _KSCECDCD_ 0 0 0 ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG ENSG00000188162|ENST00000399397|OTOG ENSG00000188162|ENST00000399397|OTOG MSMS UPN48_class_I_Rep_2 6 451.2635498046875 2 451.638071 901.261589 NaN NaN NaN NaN NaN NaN NaN 40.183 1 43.924 43.424 44.424 3.7413 0 0 0 0.40753 1 7210 7210 0.6015 0.6015 1 18988 5221 12006 12012 22609 22609 -0.19299162330560193 KSCKKGKK 8 Unmodified _KSCKKGKK_ 0 0 0 REV__ENSG00000142871|ENST00000451137|CCN1 REV__ENSG00000142871|ENST00000451137|CCN1 MULTI-MSMS UPN47_class_I_Rep_2 3 453.7846984863281 2 453.781305 905.548056 -0.080711 -3.6625E-05 2.7406 0.0012436 2.6599 0.001207 453.7846691525714 51.023 0.37152 54.361 54.214 54.586 3.3386 31 19 2 0 0 0 0.82752 1 11327 11327 0 0 1 70452 + 18989 19419 12007 12013 22610 22610 0.09150428016255319 KSCKKGKK 8 Unmodified _KSCKKGKK_ 0 0 0 REV__ENSG00000142871|ENST00000451137|CCN1 REV__ENSG00000142871|ENST00000451137|CCN1 MULTI-SECPEP UPN47_class_I_Rep_2 3 454.33697509765625 2 453.781305 905.548056 -0.080711 -3.6625E-05 2.7406 0.0012436 2.6599 0.001207 453.7846691525714 51.023 0.37152 54.361 54.214 54.586 3.3386 31 19 2 0 0 0 0.72333 1 11297 11297 0 0 1 70452 + 18990 19419 12007 12013 22611 22611 0.09150428016255319 KSDGSFIGY 9 Unmodified _KSDGSFIGY_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS UPN47_class_I_Rep_2 3 487.23492431640625 2 487.234907 972.455261 -0.14572 -7.1002E-05 0.21221 0.00010339 0.066483 3.2393E-05 487.23494335217873 40.606 0.92393 43.977 43.645 44.569 3.3712 111 74 2 0 0 0 0.1249 1 8093 8093 29.082 3.6823 1 359000 18991 1721 12008 12014 22612 22612 -0.03206798236146824 KSDGSFIGY 9 Unmodified _KSDGSFIGY_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS UPN47_class_I_Rep_3 4 487.2348327636719 2 487.234907 972.455261 -0.28244 -0.00013762 0.23639 0.00011518 -0.046056 -2.244E-05 487.23495748668756 40.795 0.86155 44.032 43.624 44.485 3.2372 110 59 2 0 0 0 0.097406 2 8178 8178;8220 34.402 9.0024 1 288060 18992 1721 12008 12014 22613;22614 22613 -0.03206798236146824 KSDGSFIGY 9 Unmodified _KSDGSFIGY_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 487.234907 972.455261 -0.26723 -0.0001302 0.064786 3.1566E-05 -0.20244 -9.8635E-05 487.2349397332596 40.277 0.87923 43.943 43.616 44.495 3.6668 -0.040686 -9.6212E-05 NaN 34.402 133 69 3 NaN NaN NaN NaN 0 NaN NaN 0 326110 18993 1721 12008 12014 -0.03206798236146824 KSDKKYKT 8 Unmodified _KSDKKYKT_ 0 0 0 REV__L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|17|1|sense REV__L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 499.27545166015625 2 499.287474 996.560395 NaN NaN NaN NaN NaN NaN NaN 67.203 1 70.565 70.065 71.065 3.3611 0 0 0 0.40659 1 16146 16146 1.8442 0.19162 1 + 18994 25492 12009 12015 22615 22615 0.061977429602734446 KSDLFFHDY 9 Unmodified _KSDLFFHDY_ 0 0 0 ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENSG00000035928|ENST00000349703|RFC1 ENSG00000035928|ENST00000349703|RFC1 MULTI-MSMS UPN47_class_I_Rep_1 2 586.2733764648438 2 586.274564 1170.53457 0.15202 8.9123E-05 -0.063734 -3.7365E-05 0.088282 5.1758E-05 586.2744799927374 46.952 0.70904 50.647 50.324 51.033 3.6951 86 47 3 0 0 0 0.088679 4 10027 9985;10027;10035;10079 36.506 27.123 1 149600 18995 848 12010 12016 22616;22617;22618;22619 22617 -0.043871512820032876 KSDLFFHDY 9 Unmodified _KSDLFFHDY_ 0 0 0 ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENSG00000035928|ENST00000349703|RFC1 ENSG00000035928|ENST00000349703|RFC1 MULTI-MSMS UPN47_class_I_Rep_2 3 586.2745971679688 2 586.274564 1170.53457 0.31613 0.00018534 0.28764 0.00016864 0.60377 0.00035398 586.2745377155527 47.401 0.49273 50.75 50.458 50.951 3.3492 61 33 2 0 0 0 0.20317 3 10185 10146;10185;10221 20.415 13.784 1 140750 18996 848 12010 12016 22620;22621;22622 22621 -0.043871512820032876 KSDLFFHDY 9 Unmodified _KSDLFFHDY_ 0 0 0 ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENSG00000035928|ENST00000349703|RFC1 ENSG00000035928|ENST00000349703|RFC1 MSMS UPN47_class_I_Rep_3 4 586.2744140625 2 586.274564 1170.53457 NaN NaN NaN NaN NaN NaN NaN 47.354 1 50.594 50.094 51.094 3.2405 0 0 0 0.34878 1 10212 10212 8.1555 2.8586 1 18997 848 12010 12016 22623 22623 -0.043871512820032876 KSDLFFHDY 9 Unmodified _KSDLFFHDY_ 0 0 0 ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENSG00000035928|ENST00000349703|RFC1 ENSG00000035928|ENST00000349703|RFC1 MSMS UPN47_class_I_Rep_3 4 586.2755737304688 2 586.274564 1170.53457 NaN NaN NaN NaN NaN NaN NaN 47.511 1 50.751 50.251 51.251 3.2405 0 0 0 0.062145 1 10259 10259 33.445 21.204 1 18998 848 12010 12016 22624 22624 -0.043871512820032876 KSDLFFHDY 9 Unmodified _KSDLFFHDY_ 0 0 0 ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENSG00000035928|ENST00000349703|RFC1 ENSG00000035928|ENST00000349703|RFC1 MSMS UPN47_class_I_Rep_3 4 586.2753295898438 2 586.274564 1170.53457 NaN NaN NaN NaN NaN NaN NaN 47.824 1 51.064 50.564 51.564 3.2405 0 0 0 0.37891 1 10344 10344 5.7319 2.1354 1 18999 848 12010 12016 22625 22625 -0.043871512820032876 KSDPFLVFY 9 Unmodified _KSDPFLVFY_ 0 0 0 ENST00000551855.1_1_12:39120300-39161507:-|nuORF;ENSG00000139117.14,CPNE8,chr12,-,I19.1,38685695,38693656|33|10.32|2|intron;nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9;ENSG00000139117|ENST00000331366|CPNE8;ENSG00000124772|ENST00000244751|CPNE5 ENST00000551855.1_1_12:39120300-39161507:-|nuORF ENST00000551855.1_1_12:39120300-39161507:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 558.2923583984375 2 558.292225 1114.5699 0.44665 0.00024936 -0.045417 -2.5356E-05 0.40123 0.00022401 558.2920977973986 70.945 1.0957 74.156 73.715 74.81 3.2113 234 94 3 0 0 0 0.24936 2 17283 17283;17455 17.113 2.2746 1 458270 19000 2485 12011 12017 22626;22627 22626 0.017195112458011863 KSDSGKPYYY 10 Unmodified _KSDSGKPYYY_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS UPN47_class_I_Rep_1 2 604.2850341796875 2 604.285128 1206.5557 -0.067217 -4.0618E-05 0.34371 0.0002077 0.2765 0.00016708 604.2852597074566 22.781 0.68443 26.485 26.115 26.799 3.7042 88 63 2 0 0 0 0.55448 2 2645 2645;2680 4.897 1.691 1 114500 19001 5313 12012 12018 22628;22629 22628 -0.039311859731242293 KSDSGKPYYY 10 Unmodified _KSDSGKPYYY_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS UPN47_class_I_Rep_2 3 604.2857055664062 2 604.285128 1206.5557 0.047118 2.8473E-05 0.042632 2.5762E-05 0.08975 5.4234E-05 604.2850297278412 22.972 0.98237 26.417 26.195 27.177 3.4447 131 88 2 0 0 0 0.55448 2 2838 2799;2838 4.897 1.9018 1 69343 19002 5313 12012 12018 22630;22631 22631 -0.039311859731242293 KSDSVVHIF 9 Unmodified _KSDSVVHIF_ 0 0 0 L1MB7_dup19974|chr17:46532306-46532821:-|3.899790707475008|0.4332460682450285|3.17|151.0|27|1|anti-sense L1MB7_dup19974|chr17:46532306-46532821:-|3.899790707475008|0.4332460682450285|3.17|151.0|27|1|anti-sense L1MB7_dup19974|chr17:46532306-46532821:-|3.899790707475008|0.4332460682450285|3.17|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_3 7 516.2796630859375 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 34.631 1 38.303 37.803 38.803 3.6721 0 0 0 0.38784 1 5519 5519 3.5965 0 1 19003 10784 12013 12019 22632 22632 0.030694564432451443 KSDVHLNFY 9 Unmodified _KSDVHLNFY_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS UPN47_class_I_Rep_1 2 561.7826538085938 2 561.782556 1121.55056 -0.017473 -9.8162E-06 -0.62773 -0.00035265 -0.6452 -0.00036246 561.7826507372997 40.67 1.1982 44.342 43.856 45.054 3.6719 272 96 4 0 0 0 0.0053074 6 8043 8002;8043;8085;8121;8158;8199 83.429 33.575 1 363110 19004 1091 12014 12020 22633;22634;22635;22636;22637;22638 22634 -0.005354450451022785 KSDVHLNFY 9 Unmodified _KSDVHLNFY_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS UPN47_class_I_Rep_2 3 561.7827758789062 2 561.782556 1121.55056 0.045343 2.5473E-05 -1.0083 -0.00056645 -0.96296 -0.00054097 561.7825914257912 41.021 1.2848 44.386 43.976 45.261 3.3655 310 107 5 0 0 0 0.0065234 8 8197 8120;8157;8197;8235;8275;8312;8349;8398 103.42 43.346 1 380710 19005 1091 12014 12020 22639;22640;22641;22642;22643;22644;22645;22646 22641 -0.005354450451022785 KSDVHLNFY 9 Unmodified _KSDVHLNFY_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MULTI-MSMS UPN47_class_I_Rep_3 4 561.7827758789062 2 561.782556 1121.55056 0.021886 1.2295E-05 -0.84847 -0.00047665 -0.82658 -0.00046436 561.7826475937384 41.21 1.0808 44.447 43.993 45.074 3.2372 257 90 4 0 0 0 0.0094161 9 8349 8228;8270;8311;8349;8385;8423;8436;8473;8512 70.332 32.358 1 462760 19006 1091 12014 12020 22647;22648;22649;22650;22651;22652;22653;22654;22655 22650 -0.005354450451022785 KSDVNKEYY 9 Unmodified _KSDVNKEYY_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_1 2 573.2777099609375 2 573.277303 1144.54005 -0.12877 -7.3818E-05 0.16769 9.6133E-05 0.038926 2.2315E-05 573.2773581638181 17.418 1.1676 20.969 20.627 21.795 3.5504 270 141 3 0 0 0 0.41587 4 1282 1282;1310;1339;1397 7.1017 2.4505 1 69158 19007 1283 12015 12021 22656;22657;22658;22659 22656 -0.026434724901946538 KSDVNKEYY 9 Unmodified _KSDVNKEYY_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_2 3 573.2767944335938 2 573.277303 1144.54005 0.047911 2.7466E-05 -0.040929 -2.3464E-05 0.0069815 4.0024E-06 573.277247905494 17.941 0.76921 21.328 21.015 21.785 3.387 128 86 2 0 0 0 0.43982 4 1430 1424;1430;1463;1500 5.7319 2.1354 1 47231 19008 1283 12015 12021 22660;22661;22662;22663 22661 -0.026434724901946538 KSDVNKEYY 9 Unmodified _KSDVNKEYY_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS UPN47_class_I_Rep_3 4 573.2771606445312 2 573.277303 1144.54005 -0.36606 -0.00020985 0.32302 0.00018518 -0.04304 -2.4674E-05 573.2775521449346 18.165 0.75002 21.52 21.049 21.799 3.3545 117 84 2 0 0 0 0.42249 2 1485 1485;1487 6.7232 0.26005 1 47010 19009 1283 12015 12021 22664;22665 22664 -0.026434724901946538 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(130)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 572.2655029296875 2 572.265547 1142.51654 0.018475 1.0573E-05 0.011539 6.6033E-06 0.030014 1.7176E-05 572.2655156518191 42.892 1.4706 46.579 46.118 47.589 3.6875 253 94 4 0 0 0 0.0057802 5 8769 8689;8729;8769;8812;8852 128.93 85.572 1 1188500 19010 734 12016 12022 22666;22667;22668;22669;22670 22668 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(86)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 572.2658081054688 2 572.265547 1142.51654 0.15914 9.1068E-05 0.22059 0.00012623 0.37972 0.0002173 572.2655799601911 47.674 1.2712 51.369 51.242 52.513 3.6951 142 81 2 0 0 0 0.0070571 3 10234 10195;10234;10288 86.332 38.583 1 264150 19011 734 12016 12022 22671;22672;22673 22672 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(42)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_1 2 572.2655029296875 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 46.662 1 50.362 49.862 50.862 3.6999 0 0 0 0.036539 1 9919 9919 41.956 9.1699 1 19012 734 12016 12022 22674 22674 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(48)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_1 2 572.2653198242188 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 46.963 1 50.658 50.158 51.158 3.6951 0 0 0 0.027993 1 10011 10011 47.594 14.809 1 19013 734 12016 12022 22675 22675 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(46)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_1 2 572.2667846679688 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 47.208 1 50.903 50.403 51.403 3.6951 0 0 0 0.029372 1 10087 10087 45.74 12.954 1 19014 734 12016 12022 22676 22676 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(59)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_1 2 572.2659301757812 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 47.476 1 51.171 50.671 51.671 3.6951 0 0 0 0.0015188 1 10160 10160 59.368 26.583 1 19015 734 12016 12022 22677 22677 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(83)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_2 3 572.2656860351562 2 572.265547 1142.51654 0.1255 7.1818E-05 -0.033147 -1.8969E-05 0.092351 5.2849E-05 572.2655046097763 43.208 1.5416 46.566 46.12 47.662 3.358 257 93 4 0 0 0 0.006303 5 8964 8802;8838;8881;8921;8964 114.2 74.244 1 1273200 19016 734 12016 12022 22678;22679;22680;22681;22682 22682 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(42)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_2 3 572.265869140625 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 47.494 1 50.843 50.343 51.343 3.3492 0 0 0 0.036539 1 10200 10200 41.956 15.687 1 19017 734 12016 12022 22683 22683 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(42)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_2 3 572.2659301757812 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 47.664 1 51.013 50.513 51.513 3.3492 0 0 0 0.036539 1 10245 10245 41.956 9.1699 1 19018 734 12016 12022 22684 22684 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(48)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_2 3 572.265625 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 47.939 1 51.288 50.788 51.788 3.3492 0 0 0 0.027993 1 10320 10320 47.594 14.809 1 19019 734 12016 12022 22685 22685 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(58)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_2 3 572.2659912109375 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 48.076 1 51.425 50.925 51.925 3.3492 0 0 0 0.0066282 1 10362 10362 57.722 24.936 1 19020 734 12016 12022 22686 22686 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(51)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_2 3 572.2654418945312 2 572.265547 1142.51654 NaN NaN NaN NaN NaN NaN NaN 48.204 1 51.554 51.054 52.054 3.3492 0 0 0 0.02515 1 10401 10401 51.415 18.63 1 19021 734 12016 12022 22687 22687 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(130)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 572.2656860351562 2 572.265547 1142.51654 0.13492 7.721E-05 -0.072363 -4.1411E-05 0.062557 3.5799E-05 572.2654829569767 43.325 1.3754 46.567 46.111 47.487 3.2419 239 86 4 0 0 0 0.0057802 5 8948 8907;8948;8989;9029;9068 128.93 76.664 1 1263200 19022 734 12016 12022 22688;22689;22690;22691;22692 22689 4 -0.04901654319019144 KSEELLDMY 9 Oxidation (M) _KSEELLDM(Oxidation (M))Y_ KSEELLDM(1)Y KSEELLDM(58)Y 0 0 1 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 572.2658081054688 2 572.265547 1142.51654 0.3973 0.00022736 -0.038877 -2.2248E-05 0.35843 0.00020512 572.2654978078635 48.319 1.6109 51.56 50.943 52.554 3.2405 220 109 3 0 0 0 0.028995 2 10454 10415;10454 57.722 33.701 1 220790 19023 734 12016 12022 22693;22694 22694 4 -0.04901654319019144 KSEELLDMY 9 Unmodified _KSEELLDMY_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 564.7698364257812 2 564.26809 1126.52163 0.30501 0.00017211 -0.20761 -0.00011715 0.097396 5.4957E-05 564.2679005249161 52.904 0.59313 56.462 56.23 56.823 3.5585 43 34 2 0 0 0 0.14216 3 11803 11803;11862;11900 26.268 0 1 123100 19024 734 12016 12023 22695;22696;22697 22695 -0.03657350456387576 KSEELLDMY 9 Unmodified _KSEELLDMY_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_2 3 564.2830200195312 2 564.26809 1126.52163 0.5166 0.0002915 -0.049389 -2.7868E-05 0.46721 0.00026363 564.2680140408536 53.231 0.63795 56.557 56.288 56.926 3.3266 66 39 2 0 0 0 0.11355 3 11926 11911;11926;11984 31.268 5.0002 1 145360 19025 734 12016 12023 22698;22699;22700 22699 -0.03657350456387576 KSEELLDMY 9 Unmodified _KSEELLDMY_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENST00000463884.1_1_X:153555730-153558035:+|nuORF ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 564.2680053710938 2 564.26809 1126.52163 0.48333 0.00027273 -0.4286 -0.00024185 0.054729 3.0882E-05 564.2680745230745 53.468 0.5765 56.663 56.32 56.897 3.1948 63 32 3 0 0 0 0.14216 2 12027 12027;12104 26.268 0 1 117280 19026 734 12016 12023 22701;22702 22701 -0.03657350456387576 KSEINILTL 9 Unmodified _KSEINILTL_ 0 0 0 L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|84|3|sense L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|84|3|sense L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|84|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.8108520507812 2 515.810782 1029.60701 0.37732 0.00019463 0.20614 0.00010633 0.58347 0.00030096 515.8107954797002 63.589 0.97174 67.047 66.613 67.584 3.4578 168 76 3 0 0 0 0.062142 1 14267 14267 43.772 0 1 1788800 19027 8930 12017 12024 22703 22703 0.09339182791586609 KSEKRKKRSF 10 Unmodified _KSEKRKKRSF_ 0 0 0 REV__L1PA15-16_dup1045|chr12:62289739-62292684:-|1.6541511750814255|0.1464946483831737|3.5|151.0|20|1|sense REV__L1PA15-16_dup1045|chr12:62289739-62292684:-|1.6541511750814255|0.1464946483831737|3.5|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 647.3942260742188 2 647.391128 1292.7677 NaN NaN NaN NaN NaN NaN NaN 106.56 1 106.56 106.06 107.06 0 0 0 0 0.53105 1 25986 25986 1.4819 0.15237 1 + 19028 29301 12018 12025 22704 22704 0.13302950228307964 KSELLVEQY 9 Unmodified _KSELLVEQY_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MSMS UPN47_class_I_Rep_3 4 554.7939453125 2 554.797872 1107.58119 NaN NaN NaN NaN NaN NaN NaN 45.491 1 48.736 48.236 49.236 3.2441 0 0 0 0.34878 1 9644 9644 8.1555 1.4324 1 19029 3488 12019 12026 22705 22705 0.0317028854929049 KSEYLRKKR 9 Unmodified _KSEYLRKKR_ 0 0 0 ENST00000533683.6_2_19:14199897-14200170:-|nuORF ENST00000533683.6_2_19:14199897-14200170:-|nuORF ENST00000533683.6_2_19:14199897-14200170:-|nuORF MSMS UPN48_class_I_Rep_2 6 604.3665771484375 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 101.07 1 104.81 104.31 105.31 3.7417 0 0 0 0.4007 1 23989 23989 0.52476 0 1 19030 7314 12020 12027 22706 22706 0.12459876308253115 KSFEGLFYF 9 Unmodified _KSFEGLFYF_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN48_class_I_Rep_1 5 569.2844848632812 2 569.2844 1136.55425 0.43503 0.00024766 0.045194 2.5728E-05 0.48023 0.00027339 569.2842293974625 76.157 0.25279 79.656 79.439 79.692 3.4996 79 29 4 0 0 0 0.13244 1 18065 18065 27.629 9.4825 1 666910 19031 3215 12021 12028 22707 22707 -0.008567752712451693 KSFEGLFYF 9 Unmodified _KSFEGLFYF_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN48_class_I_Rep_1 5 569.2847900390625 2 569.2844 1136.55425 0.43449 0.00024735 0.042746 2.4334E-05 0.47724 0.00027168 569.2842788412405 76.425 0.72463 79.935 79.694 80.419 3.5102 210 82 4 0 0 0 0.088679 5 18162 18098;18131;18162;18196;18235 36.506 13.358 1 1110800 19032 3215 12021 12028 22708;22709;22710;22711;22712 22710 -0.008567752712451693 KSFEGLFYF 9 Unmodified _KSFEGLFYF_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN48_class_I_Rep_2 6 569.2846069335938 2 569.2844 1136.55425 0.48011 0.00027332 0.036251 2.0637E-05 0.51636 0.00029395 569.2843252829289 76.428 0.95896 80.029 79.485 80.443 3.6011 362 112 5 0 0 0 0.0070571 4 18029 18002;18029;18061;18097 86.332 37.986 1 4085600 19033 3215 12021 12028 22713;22714;22715;22716 22714 -0.008567752712451693 KSFEGLFYF 9 Unmodified _KSFEGLFYF_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN48_class_I_Rep_3 7 569.2844848632812 2 569.2844 1136.55425 0.50308 0.0002864 0.019559 1.1135E-05 0.52264 0.00029753 569.284290933533 76.174 1.2472 79.757 79.364 80.611 3.5831 393 135 4 0 0 0 0.013215 3 17908 17908;17943;17975 67.838 31.711 1 2207400 19034 3215 12021 12028 22717;22718;22719 22717 -0.008567752712451693 KSFFFFQYF 9 Unmodified _KSFFFFQYF_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|88|3|anti-sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|88|3|anti-sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|88|3|anti-sense MSMS UPN47_class_I_Rep_1 2 630.8071899414062 2 630.808042 1259.60153 NaN NaN NaN NaN NaN NaN NaN 62.917 1 66.277 65.777 66.777 3.3595 0 0 0 0.4007 1 14856 14856 0.52476 0 1 19035 13007 12022 12029 22720 22720 -0.017884960002675143 KSFLCLIVTA 10 Unmodified _KSFLCLIVTA_ 0 0 0 REV__L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|58|1|anti-sense REV__L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_3 7 547.799560546875 2 547.817553 1093.62055 NaN NaN NaN NaN NaN NaN NaN 28.712 1 32.455 31.955 32.955 3.7424 0 0 0 0.53105 1 3940 3940 5.7319 1.4026 1 + 19036 25194 12023 12030 22721 22721 0.0774871729915958 KSFQGALEF 9 Unmodified _KSFQGALEF_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MULTI-MSMS UPN48_class_I_Rep_1 5 513.7667236328125 2 513.766374 1025.5182 0.25779 0.00013244 -0.06094 -3.1309E-05 0.19685 0.00010113 513.7663353210311 52.085 0.68095 55.607 55.393 56.074 3.5227 114 70 2 0 0 0 0.10956 3 10824 10785;10824;10873 32.037 4.4087 1 335580 19037 2931 12024 12031 22722;22723;22724 22723 0.0064576755189591495 KSFQGALEF 9 Unmodified _KSFQGALEF_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MULTI-MSMS UPN48_class_I_Rep_2 6 513.7664794921875 2 513.766374 1025.5182 0.35617 0.00018299 -0.11098 -5.7019E-05 0.24519 0.00012597 513.7662351254271 51.946 0.72202 55.585 55.37 56.092 3.639 101 74 2 0 0 0 0.10956 4 10741 10741;10780;10817;10859 32.037 5.7582 1 356100 19038 2931 12024 12031 22725;22726;22727;22728 22725 0.0064576755189591495 KSFQGALEF 9 Unmodified _KSFQGALEF_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MULTI-MSMS UPN48_class_I_Rep_3 7 513.7662963867188 2 513.766374 1025.5182 0.19062 9.7935E-05 0.18124 9.3116E-05 0.37186 0.00019105 513.7664208949433 52.075 0.46942 55.673 55.503 55.972 3.5979 76 53 2 0 0 0 0.16799 1 10760 10760 23.79 3.3362 1 287910 19039 2931 12024 12031 22729 22729 0.0064576755189591495 KSFQGALEF 9 Unmodified _KSFQGALEF_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MSMS UPN48_class_I_Rep_3 7 513.766357421875 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 51.93 1 55.528 55.028 56.028 3.5979 0 0 0 0.045102 1 10686 10686 38.615 4.213 1 19040 2931 12024 12031 22730 22730 0.0064576755189591495 KSFQGALEF 9 Unmodified _KSFQGALEF_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MSMS UPN48_class_I_Rep_3 7 513.7664794921875 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 52.052 1 55.65 55.15 56.15 3.5979 0 0 0 0.034285 1 10721 10721 42.835 2.596 1 19041 2931 12024 12031 22731 22731 0.0064576755189591495 KSFSPSNVKV 10 Unmodified _KSFSPSNVKV_ 0 0 0 chr7:50368065-50376533|149|21.73|0.55|5.31|+|2|IKZF1,IKZF1|1 chr7:50368065-50376533|149|21.73|0.55|5.31|+|2|IKZF1,IKZF1|1 chr7:50368065-50376533|149|21.73|0.55|5.31|+|2|IKZF1,IKZF1|1 MULTI-MSMS UPN47_class_I_Rep_3 4 546.8069458007812 2 546.806031 1091.59751 -0.19928 -0.00010897 0.2309 0.00012626 0.031617 1.7288E-05 546.8061010240849 29.854 0.73911 33.178 32.741 33.48 3.3235 92 62 2 0 0 0 0.56118 1 4831 4831 2.9952 0 1 78958 19042 619 12025 12032 22732 22732 0.05537414506034111 KSFYRWYIQ 9 Unmodified _KSFYRWYIQ_ 0 0 0 REV__Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|1|1|sense REV__Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 645.83447265625 2 645.835123 1289.65569 NaN NaN NaN NaN NaN NaN NaN 61.05 1 64.528 64.028 65.028 3.4785 0 0 0 0.37476 1 13530 13530 6.7232 1.4263 1 + 19043 32493 12026 12033 22733 22733 0.022450961513186485 KSGGGQDDRGL 11 Unmodified _KSGGGQDDRGL_ 0 0 0 MER52A_dup692|chr8:133524421-133526111:-|3.2602620452718165|0.0354646986321858|6.52|151.0|62|2|anti-sense MER52A_dup692|chr8:133524421-133526111:-|3.2602620452718165|0.0354646986321858|6.52|151.0|62|2|anti-sense MER52A_dup692|chr8:133524421-133526111:-|3.2602620452718165|0.0354646986321858|6.52|151.0|62|2|anti-sense MSMS UPN47_class_I_Rep_1 2 545.267822265625 2 545.267801 1088.52105 NaN NaN NaN NaN NaN NaN NaN 41.254 1 44.926 44.426 45.426 3.6719 0 0 0 0.38417 1 8264 8264 1.0715 0.27783 1 19044 16097 12027 12034 22734 22734 -0.019670090612407876 KSGIRPQQLV 10 Unmodified _KSGIRPQQLV_ 0 0 0 REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MSMS UPN47_class_I_Rep_1 2 563.3399658203125 2 563.340572 1124.66659 NaN NaN NaN NaN NaN NaN NaN 110.86 1 114.45 113.95 114.95 3.5835 0 0 0 0.53105 1 27333 27333 1.6526 0.17072 1 + 19045 19475 12028 12035 22735 22735 0.10924498525605486 KSHAYDPFIP 10 Unmodified _KSHAYDPFIP_ 0 0 0 REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|28|1|sense REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.796630859375 2 587.798206 1173.58186 0.39767 0.00023375 0.071786 4.2196E-05 0.46946 0.00027595 587.7978638845743 45.174 0.6995 48.932 48.638 49.338 3.7579 75 52 2 0 0 0 0.56033 1 8783 8783 3.5965 0.60125 1 160400 + 19046 23570 12029 12036 22736 22736 0.002011279889757134 KSHHALQSN 9 Unmodified _KSHHALQSN_ 0 0 0 REV__ENSG00000011295.16,TTC19,chr17,+,I1.1,16000461,16001914|53|10.08|1|intron REV__ENSG00000011295.16,TTC19,chr17,+,I1.1,16000461,16001914|53|10.08|1|intron MSMS UPN48_class_I_Rep_2 6 511.26129150390625 2 511.262322 1020.51009 NaN NaN NaN NaN NaN NaN NaN 51.075 1 54.743 54.243 55.243 3.6679 0 0 0 0.3967 1 10491 10491 1.4819 0.68827 1 + 19047 17579 12030 12037 22737 22737 0.0006563335513192214 KSHLLMVRGLL 11 Unmodified _KSHLLMVRGLL_ 0 0 0 REV__ENSG00000105642|ENST00000684775|KCNN1 REV__ENSG00000105642|ENST00000684775|KCNN1 MSMS UPN48_class_I_Rep_1 5 633.8883056640625 2 633.889375 1265.7642 NaN NaN NaN NaN NaN NaN NaN 64.328 1 67.786 67.286 68.286 3.4578 0 0 0 0.38417 1 14554 14554 1.0715 0.72083 1 + 19048 18299 12031 12038 22738 22738 0.14194564130116305 KSHRVATA 8 Unmodified _KSHRVATA_ 0 0 0 REV__nc|ENSG00000152580|Q6WRI0-3|IGSF10 REV__nc|ENSG00000152580|Q6WRI0-3|IGSF10 MULTI-MSMS UPN47_class_I_Rep_1 2 435.2511291503906 2 435.251226 868.487899 0.082074 3.5723E-05 -0.30103 -0.00013102 -0.21895 -9.5299E-05 435.25099516946403 83.473 0.76189 87.012 86.667 87.429 3.5386 242 88 3 0 0 0 0.82752 1 20921 20921 2.0598 0 1 776410 + 19049 19688 12032 12039 22739 22739 0.04839453677379879 KSHRVATA 8 Unmodified _KSHRVATA_ 0 0 0 REV__nc|ENSG00000152580|Q6WRI0-3|IGSF10 REV__nc|ENSG00000152580|Q6WRI0-3|IGSF10 MULTI-MSMS UPN48_class_I_Rep_1 5 435.2509765625 2 435.251226 868.487899 -0.036286 -1.5794E-05 -0.098252 -4.2764E-05 -0.13454 -5.8558E-05 435.2510779314976 83.301 0.85068 86.888 86.435 87.286 3.5871 256 98 3 0 0 0 0.82752 1 19967 19967 2.0598 0 1 765530 + 19050 19688 12032 12039 22740 22740 0.04839453677379879 KSHSHRSF 8 Unmodified _KSHSHRSF_ 0 0 0 REV__HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|47|1|anti-sense REV__HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|47|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.2931823730469 2 493.251757 984.488962 NaN NaN NaN NaN NaN NaN NaN 38.865 1 42.369 41.869 42.869 3.5048 0 0 0 0.40625 1 6789 6789 2.3027 0 1 + 19051 23960 12033 12040 22741 22741 -0.003903319537130301 KSIHWLMQKKV 11 Unmodified _KSIHWLMQKKV_ 0 0 0 REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.608154296875 3 466.607713 1396.80131 0.2302 0.00010741 0.60138 0.00028061 0.83158 0.00038802 466.60797032318624 96.737 0.24859 96.737 96.671 96.92 0 46 24 3 0 0 0 0.68081 1 23520 23520 0.45452 0.29519 1 3248100 + 19052 27212 12034 12041 22742 22742 0.1187823567581745 KSIHWLMQKKV 11 Unmodified _KSIHWLMQKKV_ 0 0 0 REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 466.607713 1396.80131 -0.0028718 -1.34E-06 0.22223 0.00010369 0.21936 0.00010235 466.6077417402621 93.262 0.40403 96.667 96.356 96.76 3.4052 -0.021893 -8.3558E-05 NaN 0.45452 108 57 3 NaN NaN NaN NaN 0 NaN NaN 0 193200 + 19053 27212 12034 12041 0.1187823567581745 KSIHWLMQKKV 11 Unmodified _KSIHWLMQKKV_ 0 0 0 REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 466.607713 1396.80131 0.065229 3.0436E-05 0.027731 1.294E-05 0.09296 4.3376E-05 466.60759494040735 93.109 1.2713 96.733 96.116 97.387 3.624 0.044144 -0.00035582 NaN 0.45452 262 166 2 NaN NaN NaN NaN 0 NaN NaN 0 535920 + 19054 27212 12034 12041 0.1187823567581745 KSIHWLMQKKV 11 Unmodified _KSIHWLMQKKV_ 0 0 0 REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 466.607713 1396.80131 0.19665 9.1756E-05 0.28762 0.00013421 0.48427 0.00022596 466.60780076747847 92.881 1.3799 96.651 96.196 97.576 3.77 -0.038225 7.9792E-06 NaN 0.45452 334 195 2 NaN NaN NaN NaN 0 NaN NaN 0 519490 + 19055 27212 12034 12041 0.1187823567581745 KSIHWLMQKKV 11 Unmodified _KSIHWLMQKKV_ 0 0 0 REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense REV__L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|103|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 466.607713 1396.80131 0.20347 9.4939E-05 0.38717 0.00018066 0.59064 0.00027559 466.6078392130292 92.779 0.42059 96.657 96.442 96.863 3.8782 -0.031809 0.00014733 NaN 0.45452 149 60 4 NaN NaN NaN NaN 0 NaN NaN 0 469680 + 19056 27212 12034 12041 0.1187823567581745 KSIKELQAY 9 Unmodified _KSIKELQAY_ 0 0 0 L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|59|1|sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|59|1|sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|59|1|sense MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.308406 1078.60226 NaN NaN NaN NaN NaN NaN NaN 38.208 1 38.208 37.708 38.708 0 0 0 0 0.38784 1 7254 7254 3.5965 0 1 19057 12023 12035 12042 22743 22743 0.06610298648797652 KSIKIVKKLKL 11 Unmodified _KSIKIVKKLKL_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1;ENST00000413293.1_1_22:22663100-22664193:+|nuORF;ENST00000554269.1_1_15:20362738-20365460:+|nuORF ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MSMS UPN47_class_I_Rep_3 4 433.76953125 3 433.314636 1296.92208 NaN NaN NaN NaN NaN NaN NaN 107.42 1 110.96 110.46 111.46 3.5382 0 0 0 0.38417 1 26232 26232 0.073264 0.073264 1 19058 4202 12036 12043 22744 22744 0.2854938666096132 KSIKTAITFSI 11 Unmodified _KSIKTAITFSI_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|140|3|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|140|3|sense MSMS UPN48_class_I_Rep_2 6 604.8641967773438 2 604.866089 1207.71762 NaN NaN NaN NaN NaN NaN NaN 49.061 1 52.779 52.279 53.279 3.7175 0 0 0 0.38417 1 9871 9871 1.1933 0 1 + 19059 25168 12037 12044 22745 22745 0.12207402779768017 KSIPGLLRL 9 Unmodified _KSIPGLLRL_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;DOCK8|p.D1681*|1|0.32|ENSG00000107099|chr9:434936-434937|-/T|frameshift_variant nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-SECPEP UPN48_class_I_Rep_2 6 499.2746887207031 2 498.831852 995.649151 0.27534 0.00013735 -0.050393 -2.5137E-05 0.22495 0.00011221 498.83182733933944 51.009 0.56393 54.677 54.223 54.787 3.6679 39 31 2 0 0 0 0.12157 1 10464 10464 6.2058 2.2614 1 62636 19060 1811 12038 12045 22746 22746 0.1511520299059157 KSIPGLLRL 9 Unmodified _KSIPGLLRL_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;DOCK8|p.D1681*|1|0.32|ENSG00000107099|chr9:434936-434937|-/T|frameshift_variant nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 498.831852 995.649151 0.1952 9.7371E-05 -0.24247 -0.00012095 -0.047274 -2.3582E-05 498.83174113734594 51.128 0.62833 54.652 54.274 54.902 3.5246 -0.012169 -5.9279E-05 NaN 6.2058 49 37 2 NaN NaN NaN NaN 0 NaN NaN 0 136160 19061 1811 12038 12045 0.1511520299059157 KSITSIHLV 9 Unmodified _KSITSIHLV_ 0 0 0 REV__L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|18|2|sense REV__L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 499.30377197265625 2 499.305667 996.596781 NaN NaN NaN NaN NaN NaN NaN 55.621 1 59.1 58.6 59.6 3.4785 0 0 0 0.39428 1 12639 12639 2.0598 0 1 + 19062 26102 12039 12046 22747 22747 0.09834619856985682 KSITSIHLV 9 Unmodified _KSITSIHLV_ 0 0 0 REV__L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|18|2|sense REV__L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 499.3054504394531 2 499.305667 996.596781 NaN NaN NaN NaN NaN NaN NaN 52.173 1 55.507 55.007 56.007 3.3332 0 0 0 0.39428 1 11620 11620 2.0598 0 1 + 19063 26102 12039 12046 22748 22748 0.09834619856985682 KSIYRQRR 8 Unmodified _KSIYRQRR_ 0 0 0 REV__L1MEc_dup2383|chr2:89575914-89577159:-|1.263039850367669|0.1474267064561223|3.1|151.0|47|3|sense REV__L1MEc_dup2383|chr2:89575914-89577159:-|1.263039850367669|0.1474267064561223|3.1|151.0|47|3|sense MSMS UPN48_class_I_Rep_3 7 553.8296508789062 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 82.421 1 86.128 85.628 86.628 3.7066 0 0 0 0.40643 1 19535 19535 2.0598 0 1 + 19064 28435 12040 12047 22749 22749 0.09826167305504896 KSIYTPLEL 9 Unmodified _KSIYTPLEL_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN48_class_I_Rep_1 5 532.305419921875 2 532.305332 1062.59611 0.48252 0.00025685 0.18219 9.6981E-05 0.66471 0.00035383 532.305243060455 59.951 0.90639 63.431 62.988 63.894 3.4801 150 68 3 0 0 0 0.095207 2 13185 13135;13185 34.932 0 1 564060 19065 2039 12041 12048 22750;22751 22751 0.06731780417271693 KSIYTPLEL 9 Unmodified _KSIYTPLEL_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN48_class_I_Rep_2 6 532.3052978515625 2 532.305332 1062.59611 0.5076 0.0002702 0.034504 1.8367E-05 0.54211 0.00028857 532.3052400329218 59.836 0.89344 63.323 62.887 63.78 3.4868 120 70 2 0 0 0 0.095207 2 13136 13095;13136 34.932 0 1 499700 19066 2039 12041 12048 22752;22753 22753 0.06731780417271693 KSIYTPLEL 9 Unmodified _KSIYTPLEL_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MSMS UPN48_class_I_Rep_2 6 532.305419921875 2 532.305332 1062.59611 NaN NaN NaN NaN NaN NaN NaN 60.216 1 63.703 63.203 64.203 3.4868 0 0 0 0.35904 1 13278 13278 7.609 0 1 19067 2039 12041 12048 22754 22754 0.06731780417271693 KSIYTPLEL 9 Unmodified _KSIYTPLEL_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS UPN48_class_I_Rep_3 7 532.3057861328125 2 532.305332 1062.59611 0.48929 0.00026045 0.13868 7.3821E-05 0.62798 0.00033427 532.3052844624968 59.654 0.81499 63.171 62.848 63.663 3.5169 128 66 2 0 0 0 0.053261 2 13016 12975;13016 47.594 0 1 541920 19068 2039 12041 12048 22755;22756 22756 0.06731780417271693 KSIYVVHH 8 Unmodified _KSIYVVHH_ 0 0 0 L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|34|1|sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|34|1|sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|34|1|sense MSMS UPN47_class_I_Rep_2 3 491.7962341308594 2 491.777077 981.5396 NaN NaN NaN NaN NaN NaN NaN 56.141 1 59.441 58.941 59.941 3.3009 0 0 0 0.40404 1 12828 12828 5.2307 2.9279 1 19069 13705 12042 12049 22757 22757 0.04809197371275786 KSIYYQLSR 9 Unmodified _KSIYYQLSR_ 0 0 0 REV__Tigger10_dup703|chr10:87937772-87939031:+|7.096985023337461|0.275716608591512|4.69|151.0|63|1|anti-sense REV__Tigger10_dup703|chr10:87937772-87939031:+|7.096985023337461|0.275716608591512|4.69|151.0|63|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.3197631835938 2 579.319306 1156.62406 0.39728 0.00023015 -0.40728 -0.00023595 -0.010002 -5.7946E-06 579.3190699518311 40.211 0.70823 43.862 43.399 44.107 3.6509 118 68 2 0 0 0 0.47763 1 7011 7011 2.9952 0 1 147070 + 19070 32578 12043 12050 22758 22758 0.05201103397348561 KSKFSRTTY 9 Unmodified _KSKFSRTTY_ 0 0 0 L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|108|3|anti-sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|108|3|anti-sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|108|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.3033447265625 2 559.303655 1116.59276 -0.11344 -6.3448E-05 -0.28874 -0.00016149 -0.40218 -0.00022494 559.3033395596192 13.575 0.28579 17.032 16.931 17.217 3.457 77 34 4 0 0 0 0.50088 1 393 393 0.52476 0 1 111690 19071 15297 12044 12051 22759 22759 0.03912530363277256 KSKGRRLCF 9 Unmodified _KSKGRRLCF_ 0 0 0 REV__L1MA3_dup1332|chr3:15551342-15553256:-|1.1643233172161231|0.0426023782555416|4.77|150.0|46|3|sense REV__L1MA3_dup1332|chr3:15551342-15553256:-|1.1643233172161231|0.0426023782555416|4.77|150.0|46|3|sense MSMS UPN47_class_I_Rep_1 2 547.8161010742188 2 547.81621 1093.61787 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.24 118.74 119.74 3.5943 0 0 0 0.4007 1 28618 28618 0.52476 0 1 + 19072 24968 12045 12052 22760 22760 0.07480306684851712 KSKHIQKLEGK 11 Unmodified _KSKHIQKLEGK_ 0 0 0 L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense MSMS UPN47_class_I_Rep_2 3 648.3941040039062 2 648.393336 1294.77212 NaN NaN NaN NaN NaN NaN NaN 100.46 1 103.97 103.47 104.47 3.5063 0 0 0 0.38417 1 24568 24568 4.897 2.3985 1 19073 14352 12046 12053 22761 22761 0.13652414651210165 KSKHIQKLEGK 11 Unmodified _KSKHIQKLEGK_ 0 0 0 L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 648.3938598632812 2 648.393336 1294.77212 0.51507 0.00033397 1.0165 0.00065909 1.5316 0.00099306 648.3946840386641 100.56 0.33284 104.03 103.92 104.25 3.4671 71 49 2 0 0 0 0.65821 1 24836 24836 2.4985 0 1 265650 19074 14352 12046 12053 22762 22762 0.13652414651210165 KSKHIQKLEGK 11 Unmodified _KSKHIQKLEGK_ 0 0 0 L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|36|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 648.3932495117188 2 648.393336 1294.77212 0.65396 0.00042402 0.69094 0.000448 1.3449 0.00087202 648.3941754493655 102.22 0.091545 105.99 105.98 106.07 3.776 12 9 3 0 0 0 0.65821 1 24158 24158 2.4985 0.84587 1 267280 19075 14352 12046 12053 22763 22763 0.13652414651210165 KSKKAHSYH 9 Unmodified _KSKKAHSYH_ 0 0 0 ENSG00000162676|ENST00000294702|GFI1;chr1:92483586-92486014|149|18.51|0.59|4.97|-|ENST00000427103|GFI1,GFI1;chr1:92483586-92483735|130|12.47|0.3|5.38|-|ENST00000370332|GFI1,GFI1 ENSG00000162676|ENST00000294702|GFI1 ENSG00000162676|ENST00000294702|GFI1 MSMS UPN48_class_I_Rep_2 6 543.2971801757812 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 31.819 1 35.46 34.96 35.96 3.641 0 0 0 0.39428 1 4836 4836 2.0598 0.57785 1 19076 571 12047 12054 22764 22764 0.03887083285940207 KSKKLKATR 9 Unmodified _KSKKLKATR_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 530.79833984375 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 111.04 1 114.61 114.11 115.11 3.572 0 0 0 0.4029 1 27379 27379 0 0 1 + 19077 28745 12048 12055 22765 22765 0.16541392767862817 KSKKLKATR 9 Unmodified _KSKKLKATR_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 530.3530883789062 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 88.795 1 92.248 91.748 92.748 3.4525 0 0 0 0.4029 1 22071 22071 0 0 1 + 19078 28745 12048 12055 22766 22766 0.16541392767862817 KSKKLKATR 9 Unmodified _KSKKLKATR_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 530.3533935546875 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 102.02 1 105.53 105.03 106.03 3.5151 0 0 0 0.4029 1 24857 24857 0 0 1 + 19079 28745 12048 12055 22767 22767 0.16541392767862817 KSKKLKATR 9 Unmodified _KSKKLKATR_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 530.3536376953125 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 113.01 1 116.52 116.02 117.02 3.5098 0 0 0 0.4029 1 27711 27711 0 0 1 + 19080 28745 12048 12055 22768 22768 0.16541392767862817 KSKKLKATR 9 Unmodified _KSKKLKATR_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 530.3533935546875 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 88.44 1 92.25 91.75 92.75 3.8104 0 0 0 0.4029 1 20992 20992 0 0 1 + 19081 28745 12048 12055 22769 22769 0.16541392767862817 KSKKLKATR 9 Unmodified _KSKKLKATR_ 0 0 0 REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense REV__L1MEg_dup2709|chr3:33430930-33431427:+|1.4435976733780025|0.0365771260823227|5.3|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 530.353759765625 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 88.487 1 92.297 91.797 92.797 3.8104 0 0 0 0.4029 1 21003 21003 0 0 1 + 19082 28745 12048 12055 22770 22770 0.16541392767862817 KSKKQKTTN 9 Unmodified _KSKKQKTTN_ 0 0 0 L1M4a2_dup1114|chrX:44927357-44928020:+|1.4559254027740056|0.0046860889889069|8.28|151.0|8|1|sense L1M4a2_dup1114|chrX:44927357-44928020:+|1.4559254027740056|0.0046860889889069|8.28|151.0|8|1|sense L1M4a2_dup1114|chrX:44927357-44928020:+|1.4559254027740056|0.0046860889889069|8.28|151.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.8174438476562 2 531.81693 1061.61931 0.33139 0.00017624 0.26047 0.00013852 0.59186 0.00031476 531.8169530599553 83.636 0.33171 83.636 83.55 83.882 0 65 33 3 0 0 0 0.49187 1 19929 19929 1.4819 0 1 436260 19083 8965 12049 12056 22771 22771 0.0909621925461579 KSKKRWVER 9 Unmodified _KSKKRWVER_ 0 0 0 REV__L1PA5_dup2598|chr4:37942839-37944976:-|1.0454108749426307|0.0813966547779916|3.68|151.0|60|3|sense REV__L1PA5_dup2598|chr4:37942839-37944976:-|1.0454108749426307|0.0813966547779916|3.68|151.0|60|3|sense MSMS UPN47_class_I_Rep_1 2 406.2489929199219 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 112.02 1 115.59 115.09 116.09 3.572 0 0 0 0.39887 1 27639 27639 0.96228 0.0979 1 + 19084 29742 12050 12057 22772 22772 0.12079296028105091 KSKKVHRIV 9 Unmodified _KSKKVHRIV_ 0 0 0 ENSG00000158315|ENST00000372990|RHBDL2;nc|ENSG00000158315|Q9NX52-3|RHBDL2 ENSG00000158315|ENST00000372990|RHBDL2 ENSG00000158315|ENST00000372990|RHBDL2 MSMS UPN46_class_I_Rep_3 1 547.8616333007812 2 547.861475 1093.7084 NaN NaN NaN NaN NaN NaN NaN 92.065 1 92.065 91.565 92.565 0 0 0 0 0.40098 1 22265 22265 0.45834 0.057624 1 19085 3797 12051 12058 22773 22773 0.16529099004765158 KSKKVKGAI 9 Unmodified _KSKKVKGAI_ 0 0 0 REV__HAL1ME_dup577|chr1:246238355-246238884:-|1.0220318981374297|0.0130936639812941|6.29|151.0|4|1|sense REV__HAL1ME_dup577|chr1:246238355-246238884:-|1.0220318981374297|0.0130936639812941|6.29|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 479.8221740722656 2 479.824027 957.633501 NaN NaN NaN NaN NaN NaN NaN 60.795 1 64.061 63.561 64.561 3.2654 0 0 0 0.39428 1 14248 14248 2.0598 1.2661 1 + 19086 23498 12052 12059 22774 22774 0.15298916473545887 KSKLHWMHH 9 Unmodified _KSKLHWMHH_ 0 0 0 L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|22|2|sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|22|2|sense L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 401.877685546875 3 401.878315 1202.61312 NaN NaN NaN NaN NaN NaN NaN 16.115 1 19.768 19.268 20.268 3.6527 0 0 0 0.40038 1 756 756 0.26902 0.033176 1 19087 14054 12053 12060 22775 22775 0.019914225421189258 KSKLQIHILLK 11 Unmodified _KSKLQIHILLK_ 0 0 0 REV__L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|6|1|sense REV__L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|6|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.2925109863281 3 440.962374 1319.86529 0.093886 4.14E-05 -1.9518 -0.00086067 -1.8579 -0.00081927 440.9609307212176 63.197 0.32743 63.197 62.977 63.304 0 48 34 2 0 0 0 22.551 1 14128 14128 0.40827 0 1 130080 + 19088 27628 12054 12061 22776 22776 0.21815339104455234 KSKLTGTRQ 9 Unmodified _KSKLTGTRQ_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|8|intron;nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|8|intron;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|2|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|1|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|2|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|9|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|7|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|6|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|2|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|3|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|3|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|5|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|4|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|1|intron;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|5|intron ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MSMS UPN47_class_I_Rep_2 3 509.8038330078125 2 509.803823 1017.59309 NaN NaN NaN NaN NaN NaN NaN 78.506 1 81.849 81.349 82.349 3.3428 0 0 0 0.3967 1 19503 19503 1.4819 0.68827 1 19089 919 12055 12062 22777 22777 0.08499950083137264 KSKLTGTRQ 9 Unmodified _KSKLTGTRQ_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|8|intron;nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|8|intron;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|2|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|1|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|2|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|9|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|7|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|6|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|2|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|3|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|3|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|5|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|4|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|1|intron;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|5|intron ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MSMS UPN48_class_I_Rep_2 6 509.8033142089844 2 509.803823 1017.59309 NaN NaN NaN NaN NaN NaN NaN 76.799 1 80.41 79.91 80.91 3.6116 0 0 0 0.3967 1 18143 18143 1.4819 0 1 19090 919 12055 12062 22778 22778 0.08499950083137264 KSKRKPPPKKK 11 Unmodified _KSKRKPPPKKK_ 0 0 0 ENSG00000130165|ENST00000252445|ELOF1 ENSG00000130165|ENST00000252445|ELOF1 ENSG00000130165|ENST00000252445|ELOF1 MSMS UPN48_class_I_Rep_1 5 441.2971496582031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.91 1 77.391 76.891 77.891 3.4812 0 0 0 0.38417 1 17443 17443 0.094841 0 1 19091 2642 12056 12063 22779 22779 0.22417277055797058 KSKTQRIN 8 Unmodified _KSKTQRIN_ 0 0 0 REV__L1MB3_dup10438|chr10:87912221-87914878:-|4.831936843091948|0.1089090360855994|5.47|151.0|30|1|sense REV__L1MB3_dup10438|chr10:87912221-87914878:-|4.831936843091948|0.1089090360855994|5.47|151.0|30|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7909240722656 2 487.790715 973.566878 0.26781 0.00013064 0.24898 0.00012145 0.51679 0.00025208 487.7907493279484 78.929 0.5596 78.929 78.811 79.37 0 74 54 2 0 0 0 0.82752 1 18549 18549 2.0598 0 1 280850 + 19092 25796 12057 12064 22780 22780 0.07903680911658739 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS UPN47_class_I_Rep_1 2 641.8828735351562 2 641.881542 1281.74853 0.53362 0.00034252 1.2667 0.00081304 1.8003 0.0011556 641.8822374561984 86.828 0.20478 90.465 90.292 90.496 3.6372 29 22 2 0 0 0 0.56333 1 21680 21680 1.4819 0.28856 1 90606 19093 1215 12058 12065 22781 22781 0.1189260088467563 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MSMS UPN47_class_I_Rep_1 2 641.8831787109375 2 641.881542 1281.74853 NaN NaN NaN NaN NaN NaN NaN 86.635 1 90.25 89.75 90.75 3.6153 0 0 0 0.53105 1 21643 21643 1.4819 0 1 19094 1215 12058 12065 22782 22782 0.1189260088467563 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS UPN47_class_I_Rep_3 4 642.38330078125 2 641.881542 1281.74853 0.49723 0.00031916 0.33074 0.0002123 0.82797 0.00053146 642.3826845846645 87.176 0.07048 90.556 90.516 90.587 3.3801 10 8 2 0 0 0 0.56333 1 21847 21847 1.4819 0 1 59352 19095 1215 12058 12065 22783 22783 0.1189260088467563 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MSMS UPN47_class_I_Rep_3 4 641.8826293945312 2 641.881542 1281.74853 NaN NaN NaN NaN NaN NaN NaN 86.918 1 90.299 89.799 90.799 3.3801 0 0 0 0.53105 1 21781 21781 1.4819 0 1 19096 1215 12058 12065 22784 22784 0.1189260088467563 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-SECPEP UPN47_class_I_Rep_3 4 642.3085327148438 2 641.881542 1281.74853 0.49684 0.00031892 0.95118 0.00061054 1.448 0.00092946 641.8822059266437 87.047 0.17725 90.427 90.332 90.509 3.3801 29 22 2 0 0 0 0.84575 1 21820 21820 1.4819 0.28856 1 77357 19097 1215 12058 12065 22785 22785 0.1189260088467563 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MATCH UPN46_class_I_Rep_3 1 2 641.881542 1281.74853 0.74998 0.0004814 1.2707 0.00081562 2.0207 0.001297 641.8822440149689 90.518 0.096748 90.518 90.448 90.545 0 -0.036527 -5.3861E-05 NaN 1.4819 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 164730 19098 1215 12058 12065 0.1189260088467563 KSKVFYWLVI 10 Unmodified _KSKVFYWLVI_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MATCH UPN48_class_I_Rep_1 5 2 641.881542 1281.74853 0.44763 0.00028732 1.6246 0.0010428 2.0722 0.0013301 641.8826239834183 87.06 0.1393 90.679 90.578 90.717 3.6187 0.12431 0.00040044 NaN 1.4819 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 73200 19099 1215 12058 12065 0.1189260088467563 KSKVRRPT 8 Unmodified _KSKVRRPT_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 486.3086242675781 2 486.309075 970.603597 0.13815 6.7184E-05 0.24522 0.00011925 0.38337 0.00018644 486.30891187732726 107.55 0.075386 111.18 111.15 111.23 3.6313 13 8 2 0 0 0 0.82752 1 25925 25925 9.3831 2.66 1 2392000 19100 10008 12059 12066 22786 22786 0.11711977528227635 KSKVRRPT 8 Unmodified _KSKVRRPT_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 486.309075 970.603597 0.25881 0.00012586 -0.69689 -0.0003389 -0.43808 -0.00021304 486.30863923657506 107.59 0.12279 111.26 111.2 111.32 3.6724 0.035196 -0.00031039 NaN 9.3831 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1489800 19101 10008 12059 12066 0.11711977528227635 KSKVRRPT 8 Unmodified _KSKVRRPT_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 486.309075 970.603597 0.25158 0.00012234 0.32588 0.00015848 0.57746 0.00028082 486.30918327820604 107.56 0.032021 111.24 111.23 111.26 3.6783 0.014467 0.00068438 NaN 9.3831 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1646700 19102 10008 12059 12066 0.11711977528227635 KSKYKIFISR 10 Unmodified _KSKYKIFISR_ 0 0 0 REV__nc|ENSG00000128789|Q969U7-2|PSMG2 REV__nc|ENSG00000128789|Q969U7-2|PSMG2 MSMS UPN47_class_I_Rep_2 3 635.8116455078125 2 635.387522 1268.76049 NaN NaN NaN NaN NaN NaN NaN 76.453 1 79.774 79.274 80.274 3.3216 0 0 0 0.53105 1 18925 18925 0.96228 0.43751 1 + 19103 18907 12060 12067 22787 22787 0.1368621762787825 KSKYLFFLL 9 Unmodified _KSKYLFFLL_ 0 0 0 L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|145|3|anti-sense L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|145|3|anti-sense L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|145|3|anti-sense MSMS UPN48_class_I_Rep_2 6 579.8489990234375 2 579.84971 1157.68487 NaN NaN NaN NaN NaN NaN NaN 85.839 1 89.544 89.044 90.044 3.7058 0 0 0 0.40038 1 20428 20428 0.6015 0 1 19104 9654 12061 12068 22788 22788 0.11233240447631943 KSLALLLGY 9 Unmodified _KSLALLLGY_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS UPN48_class_I_Rep_1 5 489.3049621582031 2 489.305136 976.595718 0.23457 0.00011478 -0.2562 -0.00012536 -0.021632 -1.0585E-05 489.30501135453994 66.522 0.5094 69.974 69.501 70.01 3.4516 61 33 2 0 0 0 0.10568 2 15156 15156;15199 32.786 10.049 1 231310 19105 2427 12062 12069 22789;22790 22789 0.10648405488097978 KSLALLLGY 9 Unmodified _KSLALLLGY_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS UPN48_class_I_Rep_1 5 489.30511474609375 2 489.305136 976.595718 0.22986 0.00011247 -0.21952 -0.00010741 0.01034 5.0592E-06 489.30501653145996 66.629 0.25455 70.081 70.01 70.265 3.4516 30 16 2 0 0 0 0.14216 2 15239 15239;15281 26.268 9.1552 1 192920 19106 2427 12062 12069 22791;22792 22791 0.10648405488097978 KSLALLLGY 9 Unmodified _KSLALLLGY_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS UPN48_class_I_Rep_2 6 489.3050231933594 2 489.305136 976.595718 0.28266 0.00013831 -0.21463 -0.00010502 0.068029 3.3287E-05 489.3049409230494 66.272 0.74422 69.758 69.433 70.177 3.4866 75 54 2 0 0 0 0.088679 5 15099 15054;15099;15142;15182;15225 36.506 10.238 1 248520 19107 2427 12062 12069 22793;22794;22795;22796;22797 22794 0.10648405488097978 KSLALLLGY 9 Unmodified _KSLALLLGY_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS UPN48_class_I_Rep_3 7 489.30548095703125 2 489.305136 976.595718 0.27911 0.00013657 -0.40717 -0.00019923 -0.12806 -6.2662E-05 489.3048538170635 66.025 0.29526 69.533 69.286 69.582 3.5077 36 21 2 0 0 0 0.10568 1 14961 14961 32.786 10.049 1 231670 19108 2427 12062 12069 22798 22798 0.10648405488097978 KSLALLLGY 9 Unmodified _KSLALLLGY_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS UPN48_class_I_Rep_3 7 489.3049011230469 2 489.305136 976.595718 0.28155 0.00013776 -0.31097 -0.00015216 -0.029418 -1.4395E-05 489.30492258651327 66.145 0.5302 69.653 69.573 70.104 3.5077 65 41 2 0 0 0 0.10568 3 15000 15000;15034;15078 32.786 10.049 1 228780 19109 2427 12062 12069 22799;22800;22801 22799 0.10648405488097978 KSLDTTLQF 9 Unmodified _KSLDTTLQF_ 0 0 0 ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|1|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|6|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|2|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|5|intron;nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|7|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|3|intron ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron MULTI-MSMS UPN48_class_I_Rep_1 5 526.7850341796875 2 526.784764 1051.55498 0.3136 0.0001652 0.17222 9.0722E-05 0.48582 0.00025592 526.7847695079134 51.298 0.75618 54.822 54.501 55.258 3.5246 160 56 4 0 0 0 0.013215 4 10546 10506;10546;10584;10622 67.838 21.575 1 1131000 19110 3237 12063 12070 22802;22803;22804;22805 22803 0.03126019377805278 KSLDTTLQF 9 Unmodified _KSLDTTLQF_ 0 0 0 ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|1|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|6|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|2|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|5|intron;nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|7|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|3|intron ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron MULTI-MSMS UPN48_class_I_Rep_2 6 526.78466796875 2 526.784764 1051.55498 0.39953 0.00021046 0.10798 5.688E-05 0.5075 0.00026734 526.7847303488575 51.146 0.76308 54.814 54.466 55.229 3.6679 150 52 4 0 0 0 0.0055879 5 10493 10449;10493;10532;10574;10611 80.676 33.052 1 1088400 19111 3237 12063 12070 22806;22807;22808;22809;22810 22807 0.03126019377805278 KSLDTTLQF 9 Unmodified _KSLDTTLQF_ 0 0 0 ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|1|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|6|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|2|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|5|intron;nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|7|intron;ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|3|intron ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron ENSG00000141968.8,VAV1,chr19,+,I27.1,6854099,6857053|76|14.92|4|intron MULTI-MSMS UPN48_class_I_Rep_3 7 526.7849731445312 2 526.784764 1051.55498 0.33757 0.00017783 0.15707 8.274E-05 0.49463 0.00026057 526.7847706724237 51.24 0.76615 54.85 54.504 55.271 3.6105 145 57 3 0 0 0 0.0055879 4 10505 10423;10462;10505;10543 84.522 36.904 1 1256200 19112 3237 12063 12070 22811;22812;22813;22814 22813 0.03126019377805278 KSLEAFFLY 9 Unmodified _KSLEAFFLY_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS UPN48_class_I_Rep_2 6 559.3004150390625 2 559.30005 1116.58555 0.4881 0.000273 -0.29696 -0.00016609 0.19115 0.00010691 559.299750953862 73.058 0.58984 76.623 76.356 76.946 3.5645 79 59 2 0 0 0 0.17897 1 17147 17147 22.736 2.2827 1 140180 19113 1229 12064 12071 22815 22815 0.03191797762860915 KSLEAFFLY 9 Unmodified _KSLEAFFLY_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MATCH UPN48_class_I_Rep_1 5 2 559.30005 1116.58555 0.50051 0.00027994 -0.29392 -0.00016439 0.2066 0.00011555 559.2996032820885 73.061 0.18019 76.542 76.381 76.562 3.4812 -0.060335 1.0891E-05 NaN 22.736 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 56409 19114 1229 12064 12071 0.03191797762860915 KSLENILTL 9 Unmodified _KSLENILTL_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000470353.1_1_10:5967388-5971349:+|nuORF;ENST00000479433.5_1_10:5967388-5970349:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS UPN48_class_I_Rep_1 5 515.8111572265625 2 515.810782 1029.60701 0.37732 0.00019463 0.20614 0.00010633 0.58347 0.00030096 515.8107954797002 63.589 0.97174 67.047 66.613 67.584 3.4578 168 76 3 0 0 0 0.006303 2 14381 14303;14381 100.71 13.097 1 1788800 19115 2849 12065 12072 22816;22817 22817 0.09339182791563871 KSLENILTL 9 Unmodified _KSLENILTL_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000470353.1_1_10:5967388-5971349:+|nuORF;ENST00000479433.5_1_10:5967388-5970349:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS UPN48_class_I_Rep_2 6 515.8109741210938 2 515.810782 1029.60701 0.38681 0.00019952 0.18864 9.7302E-05 0.57545 0.00029682 515.8107941849921 63.453 1.1353 66.927 66.514 67.65 3.4738 181 87 3 0 0 0 0.0050147 4 14286 14247;14286;14325;14363 114.2 14.019 1 2439000 19116 2849 12065 12072 22818;22819;22820;22821 22819 0.09339182791563871 KSLENILTL 9 Unmodified _KSLENILTL_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000470353.1_1_10:5967388-5971349:+|nuORF;ENST00000479433.5_1_10:5967388-5970349:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS UPN48_class_I_Rep_3 7 515.810791015625 2 515.810782 1029.60701 0.36103 0.00018622 0.18398 9.49E-05 0.54501 0.00028112 515.810801709943 63.235 1.0507 66.744 66.409 67.459 3.5091 194 82 3 0 0 0 0.0010613 4 14097 14097;14134;14215;14253 152.89 15.462 1 2228500 19117 2849 12065 12072 22822;22823;22824;22825 22822 0.09339182791563871 KSLFFKRIKR 10 Unmodified _KSLFFKRIKR_ 0 0 0 L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|126|3|sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|126|3|sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|126|3|sense MSMS UPN46_class_I_Rep_3 1 441.6203308105469 3 441.61883 1321.83466 NaN NaN NaN NaN NaN NaN NaN 96.216 1 96.216 95.716 96.716 0 0 0 0 0.53105 1 23389 23389 0.69767 0.19171 1 19118 14136 12066 12073 22826 22826 0.1866160551005578 KSLNAIQPL 9 Unmodified _KSLNAIQPL_ 0 0 0 ENST00000239231.6_1_5:167984225-167984402:-|nuORF ENST00000239231.6_1_5:167984225-167984402:-|nuORF ENST00000239231.6_1_5:167984225-167984402:-|nuORF MSMS UPN48_class_I_Rep_1 5 492.2977294921875 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 65.215 1 68.669 68.169 69.169 3.4541 0 0 0 0.39598 1 14821 14821 1.6526 0.17072 1 19119 5898 12067 12074 22827 22827 0.08914333339930636 KSLPKYSSCI 10 Unmodified _KSLPKYSSCI_ 0 0 0 REV__L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|50|2|sense REV__L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|50|2|sense MSMS UPN47_class_I_Rep_3 4 563.3023071289062 2 563.302267 1124.58998 NaN NaN NaN NaN NaN NaN NaN 19.725 1 23.077 22.577 23.577 3.3514 0 0 0 0.53105 1 1898 1898 1.3295 0.13619 1 + 19120 27762 12068 12075 22828 22828 0.03266938914111961 KSLPYILIL 9 Unmodified _KSLPYILIL_ 0 0 0 nc|ENSG00000189050|Q5M7Z0-2|RNFT1;ENST00000477207.2_1_17:58039882-58042045:-|nuORF;ENST00000586083.5_1_17:58037427-58042045:-|nuORF;nc|ENSG00000189050|Q5M7Z0-3|RNFT1;ENSG00000189050|ENST00000305783|RNFT1 nc|ENSG00000189050|Q5M7Z0-2|RNFT1 nc|ENSG00000189050|Q5M7Z0-2|RNFT1 MSMS UPN48_class_I_Rep_2 6 530.3446044921875 2 530.344261 1058.67397 NaN NaN NaN NaN NaN NaN NaN 77.306 1 80.917 80.417 81.417 3.6116 0 0 0 0.34878 1 18289 18289 8.1555 0 1 19121 5267 12069 12076 22829 22829 0.14697838073334424 KSLRIFPTMH 10 Unmodified _KSLRIFPTMH_ 0 0 0 REV__L1ME2z_dup2379|chr6:37842219-37842577:-|1.3998782231308105|0.0051454271782009|8.09|151.0|6|2|sense REV__L1ME2z_dup2379|chr6:37842219-37842577:-|1.3998782231308105|0.0051454271782009|8.09|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 410.5658874511719 3 410.565626 1228.67505 NaN NaN NaN NaN NaN NaN NaN 105.22 1 108.96 108.46 109.46 3.7395 0 0 0 0.53105 1 25832 25832 0.69767 0 1 + 19122 27912 12070 12077 22830 22830 0.06985729170583 KSLRQNRPDE 10 Unmodified _KSLRQNRPDE_ 0 0 0 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 MSMS UPN48_class_I_Rep_1 5 414.8915710449219 3 414.889825 1241.64765 NaN NaN NaN NaN NaN NaN NaN 91.475 1 95.101 94.601 95.601 3.626 0 0 0 0.53105 1 21980 21980 4.7159 0.52642 1 + 19123 21202 12071 12078 22831 22831 0.03648917163877741 KSLRQRKI 8 Unmodified _KSLRQRKI_ 0 0 0 REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|48|3|sense REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|48|3|sense MSMS UPN48_class_I_Rep_2 6 514.8392944335938 2 514.838 1027.66145 NaN NaN NaN NaN NaN NaN NaN 52.891 1 56.501 56.001 57.001 3.6098 0 0 0 0.40292 1 11033 11033 6.7232 0 1 + 19124 28397 12072 12079 22832 22832 0.14872239453666225 KSLSPTRWRP 10 Unmodified _KSLSPTRWRP_ 0 0 0 REV__ENST00000540171.2_1_14:105147650-105150445:+|nuORF REV__ENST00000540171.2_1_14:105147650-105150445:+|nuORF MSMS UPN47_class_I_Rep_1 2 614.3508911132812 2 614.351471 1226.68839 NaN NaN NaN NaN NaN NaN NaN 61.695 1 65.063 64.563 65.563 3.3681 0 0 0 0.53105 1 14483 14483 5.7319 0.43497 1 + 19125 22909 12073 12080 22833 22833 0.08411303274169768 KSLTGTLYL 9 Unmodified _KSLTGTLYL_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_1 5 498.29217529296875 2 498.292225 994.569897 0.20762 0.00010346 0.28686 0.00014294 0.49448 0.0002464 498.2922752569007 52.975 1.0395 56.494 56.045 57.084 3.5192 178 77 3 0 0 0 0.015319 1 11092 11092 66.457 6.3828 1 1529500 19126 3142 12074 12081 22834 22834 0.07239511245791164 KSLTGTLYL 9 Unmodified _KSLTGTLYL_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_2 6 498.2923583984375 2 498.292225 994.569897 0.33571 0.00016728 0.23568 0.00011744 0.57139 0.00028472 498.2922004604421 52.81 0.96547 56.42 56.038 57.003 3.6098 174 62 4 0 0 0 0.028995 3 10996 10996;11074;11118 57.722 6.0922 1 1678700 19127 3142 12074 12081 22835;22836;22837 22835 0.07239511245791164 KSLTGTLYL 9 Unmodified _KSLTGTLYL_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 498.292225 994.569897 0.11714 5.837E-05 0.46486 0.00023163 0.582 0.00029 498.29234110891935 53.005 1.0074 56.588 56.058 57.065 3.5836 0.087459 0.00013136 NaN 66.457 182 69 4 NaN NaN NaN NaN 0 NaN NaN 0 1592800 19128 3142 12074 12081 0.07239511245791164 KSLWNVYFF 9 Unmodified _KSLWNVYFF_ 0 0 0 HAL1_dup15319|chr11:14555476-14556593:-|1.0293890575943176|0.0710845705596909|3.86|149.0|48|1|anti-sense HAL1_dup15319|chr11:14555476-14556593:-|1.0293890575943176|0.0710845705596909|3.86|149.0|48|1|anti-sense HAL1_dup15319|chr11:14555476-14556593:-|1.0293890575943176|0.0710845705596909|3.86|149.0|48|1|anti-sense MSMS UPN47_class_I_Rep_3 4 401.8775634765625 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 17.813 1 21.171 20.671 21.671 3.3581 0 0 0 0.4007 1 1369 1369 0.23584 0 1 19129 7812 12075 12082 22838 22838 0.019229063740112906 KSMFINDL 8 Unmodified _KSMFINDL_ 0 0 0 REV__Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|19|2|anti-sense REV__Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|19|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.7359619140625 2 484.249503 966.484453 NaN NaN NaN NaN NaN NaN NaN 117.73 1 117.73 117.23 118.23 0 0 0 0 0.40625 1 29192 29192 2.3027 0 1 + 19130 17399 12076 12083 22839 22839 -0.00012977211531506327 KSNKGKIGF 9 Unmodified _KSNKGKIGF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 489.7902526855469 2 489.790184 977.565815 0.17014 8.3331E-05 -0.25186 -0.00012336 -0.081728 -4.003E-05 489.78997168116973 41.702 0.66002 45.208 44.88 45.54 3.506 91 65 2 0 0 0 0.33654 1 7633 7633 11.64 3.047 1 161780 19131 11963 12077 12084 22840 22840 0.0761346654277304 KSNKGKIGF 9 Unmodified _KSNKGKIGF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 489.79010009765625 2 489.790184 977.565815 0.20161 9.8747E-05 -0.22891 -0.00011212 -0.027299 -1.3371E-05 489.78995782842503 41.355 0.82042 45.106 44.789 45.61 3.7508 114 91 2 0 0 0 0.17468 1 7548 7548 23.148 6.2061 1 178340 19132 11963 12077 12084 22841 22841 0.0761346654277304 KSNKGKIGF 9 Unmodified _KSNKGKIGF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.7898864746094 2 489.790184 977.565815 0.15405 7.545E-05 -0.2426 -0.00011883 -0.088559 -4.3375E-05 489.78998716875276 41.571 0.74263 45.217 44.853 45.595 3.6458 108 76 2 0 0 0 0.25207 1 7482 7482 16.942 4.4107 1 180310 19133 11963 12077 12084 22842 22842 0.0761346654277304 KSNLIVVQR 9 Unmodified _KSNLIVVQR_ 0 0 0 nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF nc|ENSG00000105639|P52333-2|JAK3 nc|ENSG00000105639|P52333-2|JAK3 MULTI-MSMS UPN46_class_I_Rep_3 1 528.8298950195312 2 528.82984 1055.64513 0.14593 7.7171E-05 -0.0070176 -3.7111E-06 0.13891 7.346E-05 528.8297748467536 33.162 0.71823 33.162 32.943 33.661 0 85 56 2 0 0 0 0.24936 4 5810 5730;5771;5810;5857 17.113 10.39 1 116640 19134 1748 12078 12085 22843;22844;22845;22846 22845 0.11953113496883816 KSPGRKAAK 9 Unmodified _KSPGRKAAK_ 0 0 0 REV__nc|ENSG00000232237|Q7RTU5|ASCL5 REV__nc|ENSG00000232237|Q7RTU5|ASCL5 MSMS UPN46_class_I_Rep_3 1 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 63.32 1 63.32 62.82 63.82 0 0 0 0 0.39518 1 14212 14212 1.8442 0 1 + 19135 32112 12079 12086 22847 22847 0.1039228863688777 KSPPATVAVK 10 Unmodified _KSPPATVAVK_ 0 0 0 L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|6|2|sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|6|2|sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 499.3056945800781 2 499.305667 996.596781 NaN NaN NaN NaN NaN NaN NaN 49.691 1 53.35 52.85 53.85 3.6592 0 0 0 0.53105 1 10831 10831 1.1933 0.50296 1 19136 8918 12080 12087 22848 22848 0.09834619856997051 KSPPFKRMR 9 Unmodified _KSPPFKRMR_ 0 0 0 REV__MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|34|3|sense REV__MER11B_dup82|chr3:19987775-19988838:+|1.427616869122443|0.486609304891182|1.55|151.0|34|3|sense MSMS UPN48_class_I_Rep_2 6 573.8323364257812 2 573.83186 1145.64917 NaN NaN NaN NaN NaN NaN NaN 88.677 1 92.415 91.915 92.915 3.7379 0 0 0 0.39518 1 21107 21107 1.8442 0 1 + 19137 31096 12081 12088 22849 22849 0.08216879718952441 KSPPLLLL 8 Unmodified _KSPPLLLL_ 0 0 0 REV__L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|10|1|sense REV__L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|10|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 440.79974365234375 2 440.796946 879.57934 -0.29274 -0.00012904 3.0611 0.0013493 2.7683 0.0012203 440.7994204552883 89.643 0.3349 93.04 92.891 93.226 3.3976 58 41 2 0 0 0 0.72333 1 22461 22461 0.6015 0 1 138130 + 19138 24211 12082 12089 22850 22850 0.1347332432201256 KSPTMKKK 8 Unmodified _KSPTMKKK_ 0 0 0 REV__L1PA8_dup2168|chr4:129049722-129053557:-|6.163020448430789|0.1221774343317309|5.66|151.0|104|3|sense REV__L1PA8_dup2168|chr4:129049722-129053557:-|6.163020448430789|0.1221774343317309|5.66|151.0|104|3|sense MSMS UPN48_class_I_Rep_2 6 474.2822265625 2 474.288963 946.563372 NaN NaN NaN NaN NaN NaN NaN 110.32 1 113.99 113.49 114.49 3.669 0 0 0 0.40643 1 26251 26251 2.0598 0 1 + 19139 30213 12083 12090 22851 22851 0.08795294813444343 KSPYRETLI 9 Unmodified _KSPYRETLI_ 0 0 0 HERVK3-int_dup256|chr19:11858484-11858928:-|2.397672718117244|0.1141519808717784|4.39|151.0|5|2|sense HERVK3-int_dup256|chr19:11858484-11858928:-|2.397672718117244|0.1141519808717784|4.39|151.0|5|2|sense HERVK3-int_dup256|chr19:11858484-11858928:-|2.397672718117244|0.1141519808717784|4.39|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3047485351562 2 553.813856 1105.61316 -0.0072182 -3.9975E-06 -0.19772 -0.0001095 -0.20494 -0.0001135 553.8135359959416 38.539 0.67502 42.205 41.87 42.545 3.6652 62 47 2 0 0 0 0.32682 2 7411 7411;7438 12.241 1.4411 1 92321 19140 8301 12084 12091 22852;22853 22852 0.06457701023100526 KSPYRETLI 9 Unmodified _KSPYRETLI_ 0 0 0 HERVK3-int_dup256|chr19:11858484-11858928:-|2.397672718117244|0.1141519808717784|4.39|151.0|5|2|sense HERVK3-int_dup256|chr19:11858484-11858928:-|2.397672718117244|0.1141519808717784|4.39|151.0|5|2|sense HERVK3-int_dup256|chr19:11858484-11858928:-|2.397672718117244|0.1141519808717784|4.39|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.3054809570312 2 553.813856 1105.61316 -0.050761 -2.8112E-05 0.39396 0.00021818 0.34319 0.00019007 553.8137395186986 39.036 0.78481 42.274 41.939 42.724 3.238 73 54 2 0 0 0 0.39745 3 7670 7670;7700;7728 8.1555 8.1555 1 59363 19141 8301 12084 12091 22854;22855;22856 22854 0.06457701023100526 KSQDAKSTCK 10 Unmodified _KSQDAKSTCK_ 0 0 0 L1PA4_dup4557|chr6:57451782-57457923:-|1.5968329131001384|0.0363941645007639|5.46|149.0|94|2|sense L1PA4_dup4557|chr6:57451782-57457923:-|1.5968329131001384|0.0363941645007639|5.46|149.0|94|2|sense L1PA4_dup4557|chr6:57451782-57457923:-|1.5968329131001384|0.0363941645007639|5.46|149.0|94|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.278564453125 2 548.27678 1094.53901 0.30753 0.00016861 3.1518 0.0017281 3.4593 0.0018967 548.2779759152434 51.112 0.097363 54.705 54.681 54.779 3.5932 5 4 2 0 0 0 0.56189 1 11276 11276 2.4985 0.43874 1 46102 19142 14354 12085 12092 22857 22857 -0.004480101307535733 KSQELYQYF 9 Unmodified _KSQELYQYF_ 0 0 0 REV__ENST00000529281.5_1_11:102933090-102962462:-|nuORF REV__ENST00000529281.5_1_11:102933090-102962462:-|nuORF MSMS UPN47_class_I_Rep_3 4 603.2977294921875 2 603.295496 1204.57644 NaN NaN NaN NaN NaN NaN NaN 46.578 1 49.822 49.322 50.322 3.2439 0 0 0 0.39036 1 9977 9977 2.9952 0.49676 1 + 19143 19240 12086 12093 22858 22858 -0.017665955934944577 KSQETTQF 8 Unmodified _KSQETTQF_ 0 0 0 nc|ENSG00000138336|Q8NFU7-3|TET1;ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-4|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 MULTI-MSMS UPN46_class_I_Rep_3 1 485.2486267089844 2 484.737814 967.461075 0.18634 9.0328E-05 -0.2942 -0.00014261 -0.10785 -5.228E-05 484.7379383820122 37.532 0.36077 37.532 37.409 37.77 0 54 32 2 0 0 0 0.82752 1 7106 7106 9.3831 1.2276 1 114910 19144 3080 12087 12094 22859 22859 -0.023956997244681588 KSQFQKAK 8 Unmodified _KSQFQKAK_ 0 0 0 L1MD1_dup111|chr1:70288025-70288978:+|1.934029770875493|0.11161879775005|4.11|151.0|20|2|sense L1MD1_dup111|chr1:70288025-70288978:+|1.934029770875493|0.11161879775005|4.11|151.0|20|2|sense L1MD1_dup111|chr1:70288025-70288978:+|1.934029770875493|0.11161879775005|4.11|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 482.78179931640625 2 482.782359 963.550165 NaN NaN NaN NaN NaN NaN NaN 32.334 1 35.621 35.121 36.121 3.2867 0 0 0 0.40625 1 5628 5628 2.3027 0.4585 1 19145 11907 12088 12095 22860 22860 0.06693180025695256 KSQIWKHLS 9 Unmodified _KSQIWKHLS_ 0 0 0 L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|97|3|sense L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|97|3|sense L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|97|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 563.3186645507812 2 563.822015 1125.62948 0.51841 0.00029229 -2.4747 -0.0013953 -1.9563 -0.001103 563.8207698129905 56.44 0.21007 59.741 59.612 59.823 3.3009 18 11 2 0 0 0 0.12251 1 12913 12913 5.2969 2.0156 1 111360 19146 9548 12089 12096 22861 22861 0.0716882697984147 KSQKRLVAY 9 Unmodified _KSQKRLVAY_ 0 0 0 L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|71|3|sense L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|71|3|sense L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|71|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.8284301757812 2 546.82984 1091.64513 0.38167 0.00020871 -0.34346 -0.00018782 0.03821 2.0895E-05 546.8296180930956 45.894 0.86408 49.531 49.127 49.991 3.6369 89 61 2 0 0 0 0.30034 1 8800 8800 13.906 1.6654 1 163750 19147 15471 12090 12097 22862 22862 0.10297113496881138 KSQPEQLEK 9 Unmodified _KSQPEQLEK_ 0 0 0 L1PB1_dup12332|chr19:24082828-24083541:+|3.2601052882051444|0.2448804299297638|3.73|151.0|12|2|sense L1PB1_dup12332|chr19:24082828-24083541:+|3.2601052882051444|0.2448804299297638|3.73|151.0|12|2|sense L1PB1_dup12332|chr19:24082828-24083541:+|3.2601052882051444|0.2448804299297638|3.73|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 543.795166015625 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 40.038 1 43.689 43.189 44.189 3.6509 0 0 0 0.27207 1 7072 7072 12.241 0.06591 1 19148 15030 12091 12098 22863 22863 0.032325202637593975 KSQSREAAF 9 Unmodified _KSQSREAAF_ 0 0 0 REV__ENST00000468359.1_1_2:174223420-174223519:+|nuORF REV__ENST00000468359.1_1_2:174223420-174223519:+|nuORF MSMS UPN48_class_I_Rep_2 6 512.2659912109375 2 512.26453 1022.51451 NaN NaN NaN NaN NaN NaN NaN 49.936 1 53.631 53.131 54.131 3.6946 0 0 0 0.31276 1 10143 10143 10.074 0 1 + 19149 22488 12092 12099 22864 22864 0.004150977780341236 KSQTVNILGF 10 Unmodified _KSQTVNILGF_ 0 0 0 MER58A_dup6236|chr8:97672114-97672295:+|1.1993301544833186|0.0114440703488064|6.71|151.0|11|2|anti-sense MER58A_dup6236|chr8:97672114-97672295:+|1.1993301544833186|0.0114440703488064|6.71|151.0|11|2|anti-sense MER58A_dup6236|chr8:97672114-97672295:+|1.1993301544833186|0.0114440703488064|6.71|151.0|11|2|anti-sense MSMS UPN46_class_I_Rep_3 1 553.8138427734375 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 31.89 1 31.89 31.39 32.39 0 0 0 0 0.53105 1 5386 5386 2.9952 0.41776 1 19150 16136 12093 12100 22865 22865 0.06457701023100526 KSQYLLQVF 9 Unmodified _KSQYLLQVF_ 0 0 0 REV__L1MC3_dup11823|chr17:75357235-75357518:+|1.6636043680992894|0.0049003425218988|8.41|151.0|14|3|sense REV__L1MC3_dup11823|chr17:75357235-75357518:+|1.6636043680992894|0.0049003425218988|8.41|151.0|14|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.8203125 2 563.318774 1124.623 0.35081 0.00019762 -0.27287 -0.00015371 0.077941 4.3905E-05 563.3185255374627 55.638 1.2112 59.117 58.664 59.876 3.4785 198 69 4 0 0 0 0.37599 1 12853 12853 9.3831 3.1773 1 1082200 + 19151 26711 12094 12101 22866 22866 0.06566889028476908 KSQYPKGLK 9 Unmodified _KSQYPKGLK_ 0 0 0 REV__ENST00000599047.1_1_19:42334540-42334855:+|nuORF REV__ENST00000599047.1_1_19:42334540-42334855:+|nuORF MSMS UPN48_class_I_Rep_3 7 524.8108520507812 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 60.652 1 64.165 63.665 64.665 3.5129 0 0 0 0.39518 1 13343 13343 1.8442 0 1 + 19152 23204 12095 12102 22867 22867 0.08578022231267823 KSREENGHPDS 11 Unmodified _KSREENGHPDS_ 0 0 0 L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|41|3|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|41|3|sense L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|41|3|sense MSMS UPN47_class_I_Rep_2 3 628.2860107421875 2 628.286722 1254.55889 NaN NaN NaN NaN NaN NaN NaN 51.806 1 55.139 54.639 55.639 3.3332 0 0 0 0.38417 1 11507 11507 0.96228 0.36078 1 19153 9306 12096 12103 22868 22868 -0.05820542866422329 KSREKMEKEE 10 Unmodified _KSREKMEKEE_ 0 0 0 REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|69|3|sense REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|69|3|sense MSMS UPN48_class_I_Rep_1 5 647.3294677734375 2 647.327002 1292.63945 NaN NaN NaN NaN NaN NaN NaN 59.633 1 63.113 62.613 63.613 3.4801 0 0 0 0.53105 1 13120 13120 2.9952 0 1 + 19154 27088 12097 12104 22869 22869 0.004836021322944362 KSRENINL 8 Unmodified _KSRENINL_ 0 0 0 nc|ENSG00000172733|Q9UJV8-2|PURG nc|ENSG00000172733|Q9UJV8-2|PURG nc|ENSG00000172733|Q9UJV8-2|PURG MSMS UPN46_class_I_Rep_3 1 487.2755126953125 2 487.274898 972.535243 NaN NaN NaN NaN NaN NaN NaN 64.743 1 64.743 64.243 65.243 0 0 0 0 0.40746 1 14593 14593 0.69038 0 1 19155 16756 12098 12105 22870 22870 0.04787688157693992 KSRHQHPVIL 10 Unmodified _KSRHQHPVIL_ 0 0 0 Charlie1a_dup2697|chr7:152115140-152115774:+|1.1168081211537504|0.1541902465722866|2.86|151.0|20|3|sense Charlie1a_dup2697|chr7:152115140-152115774:+|1.1168081211537504|0.1541902465722866|2.86|151.0|20|3|sense Charlie1a_dup2697|chr7:152115140-152115774:+|1.1168081211537504|0.1541902465722866|2.86|151.0|20|3|sense MSMS UPN48_class_I_Rep_2 6 405.5746765136719 3 405.575401 1213.70437 NaN NaN NaN NaN NaN NaN NaN 91.071 1 94.826 94.326 95.326 3.7554 0 0 0 0.53105 1 21682 21682 3.0723 0.33707 1 19156 468 12099 12106 22871 22871 0.106070095110681 KSRKRQEPPL 10 Unmodified _KSRKRQEPPL_ 0 0 0 REV__nc|ENSG00000143375|Q9P2M7-2|CGN REV__nc|ENSG00000143375|Q9P2M7-2|CGN MSMS UPN47_class_I_Rep_1 2 619.8696899414062 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 87.212 1 90.849 90.349 91.349 3.6372 0 0 0 0.53105 1 21788 21788 5.7319 0 1 + 19157 19443 12100 12107 22872 22872 0.11614974819940471 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.3857421875 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.01 1 107.77 107.27 108.27 3.7627 0 0 0 0.38417 1 25564 25564 4.897 0 1 + 19158 28425 12101 12108 22873 22873 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.3853149414062 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.19 1 107.95 107.45 108.45 3.7627 0 0 0 0.38417 1 25602 25602 4.897 0 1 + 19159 28425 12101 12108 22874 22874 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.3883056640625 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.22 1 107.98 107.48 108.48 3.7627 0 0 0 0.38417 1 25609 25609 4.897 0 1 + 19160 28425 12101 12108 22875 22875 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.390380859375 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.57 1 108.33 107.83 108.83 3.7627 0 0 0 0.38417 1 25680 25680 4.897 0 1 + 19161 28425 12101 12108 22876 22876 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.388671875 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.58 1 108.34 107.84 108.84 3.7627 0 0 0 0.38417 1 25683 25683 4.897 0 1 + 19162 28425 12101 12108 22877 22877 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.3867797851562 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.21 1 108.95 108.45 109.45 3.7395 0 0 0 0.38417 1 25831 25831 4.897 0 1 + 19163 28425 12101 12108 22878 22878 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 626.3861083984375 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.82 1 109.53 109.03 110.03 3.7088 0 0 0 0.38417 1 25958 25958 4.897 0 1 + 19164 28425 12101 12108 22879 22879 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.889892578125 2 626.385845 1250.75714 0.6346 0.00039751 2.4867 0.0015577 3.1213 0.0019552 626.8888629951978 104.88 0.075836 108.41 108.37 108.45 3.5327 20 11 2 0 0 0 0.61292 1 25456 25456 4.897 0 1 21935000 + 19165 28425 12101 12108 22880 22880 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 626.38818359375 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.44 1 107.97 107.47 108.47 3.5289 0 0 0 0.38417 1 25364 25364 4.897 0 1 + 19166 28425 12101 12108 22881 22881 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 626.3881225585938 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.14 1 108.68 108.18 109.18 3.5327 0 0 0 0.38417 1 25516 25516 4.897 0 1 + 19167 28425 12101 12108 22882 22882 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 626.3859252929688 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.77 1 109.3 108.8 109.8 3.5327 0 0 0 0.38417 1 25641 25641 4.897 0 1 + 19168 28425 12101 12108 22883 22883 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 626.388671875 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.78 1 109.31 108.81 109.81 3.5327 0 0 0 0.38417 1 25644 25644 4.897 0 1 + 19169 28425 12101 12108 22884 22884 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 626.8894653320312 2 626.385845 1250.75714 0.6346 0.00039751 2.4867 0.0015577 3.1213 0.0019552 626.8888629951978 104.88 0.075836 108.41 108.37 108.45 3.5327 20 11 2 0 0 0 22.551 1 25452 25452 4.897 0 1 21935000 + 19170 28425 12101 12108 22885 22885 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.38916015625 2 626.385845 1250.75714 0.51243 0.00032098 4.0429 0.0025324 4.5553 0.0028534 626.8891637048349 104 0.10898 107.52 107.49 107.6 3.5205 32 17 2 0 0 0 0.61292 2 25507 25507;25515 4.897 0 1 44138000 + 19171 28425 12101 12108 22886;22887 22886 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.3867797851562 2 626.385845 1250.75714 0.51244 0.00032098 3.7397 0.0023425 4.2521 0.0026635 626.8894156703108 104.12 0.2767 107.64 107.59 107.86 3.5205 49 44 2 0 0 0 0.61292 4 25528 25528;25534;25536;25562 4.897 0 1 30220000 + 19172 28425 12101 12108 22888;22889;22890;22891 22888 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 626.38623046875 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.35 1 107.87 107.37 108.37 3.5205 0 0 0 0.38417 1 25581 25581 4.897 0 1 + 19173 28425 12101 12108 22892 22892 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 626.3877563476562 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.55 1 108.07 107.57 108.57 3.5205 0 0 0 0.38417 1 25623 25623 4.897 0 1 + 19174 28425 12101 12108 22893 22893 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 626.3890991210938 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.84 1 109.37 108.87 109.87 3.5367 0 0 0 0.38417 1 25897 25897 4.897 0 1 + 19175 28425 12101 12108 22894 22894 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 626.3939208984375 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 103.86 1 107.49 106.99 107.99 3.6209 0 0 0 0.38417 1 25038 25038 4.897 0 1 + 19176 28425 12101 12108 22895 22895 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 626.3862915039062 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 103.88 1 107.5 107 108 3.6209 0 0 0 0.38417 1 25041 25041 4.897 0 1 + 19177 28425 12101 12108 22896 22896 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.3894653320312 2 626.385845 1250.75714 0.59994 0.0003758 2.1912 0.0013725 2.7911 0.0017483 626.3874924506532 104.25 0.27109 107.97 107.93 108.2 3.7192 73 39 2 0 0 0 0.61292 1 24610 24610 4.897 0 1 49877000 + 19178 28425 12101 12108 22897 22897 0.14178967573889167 KSRPKSPRKAP 11 Unmodified _KSRPKSPRKAP_ 0 0 0 REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense REV__L1MEc_dup18347|chr22:49875720-49876636:-|2.642298983686052|0.1238076420655757|4.42|151.0|13|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 626.385845 1250.75714 0.51244 0.00032098 3.7397 0.0023425 4.2521 0.0026635 626.8894156703108 104.12 0.2767 107.64 107.59 107.86 3.5205 -0.16637 0.001447 NaN 4.897 49 44 2 NaN NaN NaN NaN 0 NaN NaN 0 30220000 + 19179 28425 12101 12108 0.14178967573889167 KSRRSHPILT 10 Unmodified _KSRRSHPILT_ 0 0 0 REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|9|1|sense REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 598.3593139648438 2 597.856921 1193.69929 0.57628 0.00034454 -0.83574 -0.00049965 -0.25945 -0.00015512 597.8560667071771 88.377 0.22119 88.377 88.199 88.421 0 46 21 3 0 0 0 0.56309 1 21206 21206 1.6526 1.6526 1 546920 + 19180 30305 12102 12109 22898 22898 0.11018705648439209 KSRRSHPILT 10 Unmodified _KSRRSHPILT_ 0 0 0 REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|9|1|sense REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|9|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 597.856921 1193.69929 0.43008 0.00025713 -0.85404 -0.00051059 -0.42396 -0.00025347 597.856195310548 84.835 0.48093 88.433 88.006 88.487 3.5973 0.15001 -8.286E-06 NaN 1.6526 118 68 2 NaN NaN NaN NaN 0 NaN NaN 0 403750 + 19181 30305 12102 12109 0.11018705648439209 KSSEVFTTF 9 Unmodified _KSSEVFTTF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MSMS UPN46_class_I_Rep_3 1 523.2628173828125 2 523.263665 1044.51278 NaN NaN NaN NaN NaN NaN NaN 52.337 1 52.337 51.837 52.837 0 0 0 0 0.10427 1 11185 11185 23.79 3.3752 1 19182 1254 12103 12110 22899 22899 -0.007699560306036801 KSSEVFTTF 9 Unmodified _KSSEVFTTF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MSMS UPN46_class_I_Rep_3 1 523.2642211914062 2 523.263665 1044.51278 NaN NaN NaN NaN NaN NaN NaN 52.41 1 52.41 51.91 52.91 0 0 0 0 0.10427 1 11206 11206 23.79 3.3752 1 19183 1254 12103 12110 22900 22900 -0.007699560306036801 KSSHITSCFVY 11 Unmodified _KSSHITSCFVY_ 0 0 0 REV__L1PB4_dup6610|chr16:47282221-47283465:-|1.3798957509052776|0.0243939263888899|5.82|151.0|23|2|sense REV__L1PB4_dup6610|chr16:47282221-47283465:-|1.3798957509052776|0.0243939263888899|5.82|151.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 636.3077392578125 2 636.308081 1270.60161 NaN NaN NaN NaN NaN NaN NaN 59.207 1 62.373 61.873 62.873 3.1658 0 0 0 0.38417 1 13816 13816 1.0715 0 1 + 19184 30616 12104 12111 22901 22901 -0.0228686406255747 KSSRKAAR 8 Unmodified _KSSRKAAR_ 0 0 0 REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|64|2|sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|64|2|sense MSMS UPN47_class_I_Rep_1 2 452.27752685546875 2 452.277775 902.540997 NaN NaN NaN NaN NaN NaN NaN 83.387 1 86.925 86.425 87.425 3.5386 0 0 0 0.40746 1 20854 20854 0.69038 0 1 + 19185 30421 12105 12112 22902 22902 0.08582831460023499 KSSRKAAR 8 Unmodified _KSSRKAAR_ 0 0 0 REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|64|2|sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|64|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.2778015136719 2 452.277775 902.540997 0.032208 1.4567E-05 -0.28229 -0.00012767 -0.25008 -0.0001131 452.2775445558192 83.197 0.32429 86.784 86.746 87.07 3.5871 50 36 2 0 0 0 0.82752 1 19926 19926 0.69038 0 1 126670 + 19186 30421 12105 12112 22903 22903 0.08582831460023499 KSSTKKSKKE 10 Unmodified _KSSTKKSKKE_ 0 0 0 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 575.8430786132812 2 575.843145 1149.67174 0.42259 0.00024335 -0.12239 -7.0476E-05 0.3002 0.00017287 575.8428248119171 83.092 0.56614 86.679 86.311 86.877 3.5871 135 59 3 0 0 0 0.56333 1 19893 19893 1.4819 1.4819 1 290360 19187 2567 12106 12113 22904 22904 0.10288757597550102 KSSTKLHII 9 Unmodified _KSSTKLHII_ 0 0 0 REV__L1MC3_dup5795|chr7:131033540-131034113:+|1.4009289255155326|0.0833491826135632|4.07|151.0|27|1|anti-sense REV__L1MC3_dup5795|chr7:131033540-131034113:+|1.4009289255155326|0.0833491826135632|4.07|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.819091796875 2 513.818941 1025.62333 NaN NaN NaN NaN NaN NaN NaN 47.79 1 51.312 50.812 51.812 3.5219 0 0 0 0.38784 1 9482 9482 3.5965 1.098 1 + 19188 26764 12107 12114 22905 22905 0.11154308748336916 KSTATRRPF 9 Unmodified _KSTATRRPF_ 0 0 0 REV__L1PA4_dup1403|chr2:148226113-148231635:-|1.6637721982120748|0.0485281896709338|5.1|151.0|87|2|sense REV__L1PA4_dup1403|chr2:148226113-148231635:-|1.6637721982120748|0.0485281896709338|5.1|151.0|87|2|sense MSMS UPN48_class_I_Rep_1 5 532.3023681640625 2 532.30399 1062.59343 NaN NaN NaN NaN NaN NaN NaN 47.452 1 50.974 50.474 51.474 3.5219 0 0 0 0.3377 1 9380 9380 8.7454 0.83525 1 + 19189 29606 12108 12115 22906 22906 0.06463369802986563 KSTDSLFLSTK 11 Unmodified _KSTDSLFLSTK_ 0 0 0 REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|35|2|sense REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|35|2|sense MSMS UPN46_class_I_Rep_3 1 613.3530883789062 2 613.834985 1225.65542 NaN NaN NaN NaN NaN NaN NaN 81.227 1 81.227 80.727 81.727 0 0 0 0 0.38417 1 19174 19174 2.4985 0.65425 1 + 19190 23521 12109 12116 22907 22907 0.051616316407944396 KSTLSLPLEL 10 Unmodified _KSTLSLPLEL_ 0 0 0 L1MC4_dup310|chr1:35970022-35970717:-|3.884832310974964|0.1305600827931906|4.9|151.0|45|3|anti-sense L1MC4_dup310|chr1:35970022-35970717:-|3.884832310974964|0.1305600827931906|4.9|151.0|45|3|anti-sense L1MC4_dup310|chr1:35970022-35970717:-|3.884832310974964|0.1305600827931906|4.9|151.0|45|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.8316650390625 2 550.831714 1099.64888 0.32607 0.00017961 -0.29373 -0.0001618 0.032336 1.7812E-05 550.831412902932 43.754 0.62527 47.393 47.149 47.774 3.6385 54 41 2 0 0 0 0.53794 1 8186 8186 7.1017 0 1 72887 19191 11487 12110 12117 22908 22908 0.10303738480070024 KSTVIVIGAL 10 Unmodified _KSTVIVIGAL_ 0 0 0 REV__HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|178|1|anti-sense REV__HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|178|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 500.8240661621094 2 500.823692 999.632832 0.35527 0.00017793 -0.15073 -7.5489E-05 0.20454 0.00010244 500.8236053103816 61.368 0.65646 64.836 64.503 65.16 3.4678 117 61 2 0 0 0 0.4561 1 13558 13558 15.248 0.8431 1 190640 + 19192 23898 12111 12118 22909 22909 0.13300077033841262 KSTVIVIGAL 10 Unmodified _KSTVIVIGAL_ 0 0 0 REV__HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|178|1|anti-sense REV__HERVL-int_dup799|chr5:32287596-32293169:+|5.22163465646391|0.0963362717278497|5.76|151.0|178|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 500.8233337402344 2 500.823692 999.632832 0.35303 0.00017681 -0.083101 -4.1619E-05 0.26993 0.00013519 500.82355671069473 61.248 0.59082 64.727 64.429 65.02 3.4785 92 50 2 0 0 0 0.4561 1 13520 13520 15.248 0.8431 1 237760 + 19193 23898 12111 12118 22910 22910 0.13300077033841262 KSVEKKKIHS 10 Unmodified _KSVEKKKIHS_ 0 0 0 REV__ENSG00000174429|ENST00000311955|ABRA REV__ENSG00000174429|ENST00000311955|ABRA MULTI-MSMS UPN47_class_I_Rep_1 2 592.861083984375 2 592.361505 1182.70846 0.51021 0.00030223 -2.6911 -0.0015941 -2.1809 -0.0012919 592.8611669994291 109.08 0.15392 112.68 112.61 112.76 3.6046 11 8 2 0 0 0 0.4965 1 26879 26879 12.241 1.4411 1 6229600 + 19194 20523 12112 12119 22911 22911 0.12441054214127689 KSVIYGFYY 9 Unmodified _KSVIYGFYY_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|251|3|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|251|3|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|251|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.2938232421875 2 570.292225 1138.5699 0.36858 0.0002102 -1.3121 -0.00074828 -0.94352 -0.00053808 570.2913506410001 74.486 0.34229 77.88 77.793 78.135 3.3937 43 29 2 0 0 0 0.35081 1 18347 18347 10.824 1.4765 1 57994 19195 9367 12113 12120 22912 22912 0.006155112458145595 KSVIYGFYY 9 Unmodified _KSVIYGFYY_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|251|3|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|251|3|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|251|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 570.292225 1138.5699 0.45349 0.00025862 -2.2729 -0.0012962 -1.8194 -0.0010376 570.290687265584 74.952 0.18432 78.265 78.136 78.32 3.3127 0.19273 -0.00062941 NaN 10.824 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 54660 19196 9367 12113 12120 0.006155112458145595 KSVNVIPPV 9 Unmodified _KSVNVIPPV_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|153|2|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|153|2|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|153|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.7944641113281 2 476.794935 951.575317 NaN NaN NaN NaN NaN NaN NaN 63.615 1 63.615 63.115 64.115 0 0 0 0 0.3967 1 14291 14291 1.4819 0.68827 1 19197 9336 12114 12121 22913 22913 0.09759234828277386 KSVTLWPDNE 10 Unmodified _KSVTLWPDNE_ 0 0 0 REV__MLT1E2_dup3745|chr20:25025446-25026012:-|1.1152714566669997|0.2528398391767323|2.14|151.0|9|2|sense REV__MLT1E2_dup3745|chr20:25025446-25026012:-|1.1152714566669997|0.2528398391767323|2.14|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 594.7984008789062 2 594.798403 1187.58225 0.31124 0.00018512 -0.16997 -0.0001011 0.14127 8.4025E-05 594.7981781239274 52.574 1.2488 56.132 55.772 57.021 3.5585 206 88 4 0 0 0 0.4965 1 11728 11728 12.241 0 1 1187200 + 19198 31698 12115 12122 22914 22914 -0.004034970818338479 KSWAKNKI 8 Unmodified _KSWAKNKI_ 0 0 0 REV__nc|ENSG00000111364|Q8NHQ9-2|DDX55 REV__nc|ENSG00000111364|Q8NHQ9-2|DDX55 MULTI-MSMS UPN48_class_I_Rep_1 5 487.7922058105469 2 487.792727 973.5709 0.14951 7.2928E-05 0.86692 0.00042288 1.0164 0.0004958 487.79243508480795 44.675 0.18096 48.188 48.081 48.262 3.5132 25 13 2 0 0 0 0.82752 1 8551 8551 4.3292 0.38484 1 70411 + 19199 18454 12116 12123 22915 22915 0.08305770405377189 KSYAGYQTL 9 Unmodified _KSYAGYQTL_ 0 0 0 nc|ENSG00000005893|P13473-2|LAMP2 nc|ENSG00000005893|P13473-2|LAMP2 nc|ENSG00000005893|P13473-2|LAMP2 MULTI-MSMS UPN48_class_I_Rep_1 5 515.7638549804688 2 515.763832 1029.51311 0.29577 0.00015255 -0.17678 -9.1176E-05 0.11899 6.137E-05 515.7636527421039 35.364 0.93512 38.874 38.537 39.472 3.5101 228 93 3 0 0 0 0.006303 6 5796 5689;5725;5761;5796;5829;5869 104.48 40.524 1 775520 19200 16616 12117 12124 22916;22917;22918;22919;22920;22921 22919 -0.00046536310719602625 KSYAGYQTL 9 Unmodified _KSYAGYQTL_ 0 0 0 nc|ENSG00000005893|P13473-2|LAMP2 nc|ENSG00000005893|P13473-2|LAMP2 nc|ENSG00000005893|P13473-2|LAMP2 MULTI-MSMS UPN48_class_I_Rep_2 6 515.7637939453125 2 515.763832 1029.51311 0.32355 0.00016688 -0.24355 -0.00012562 0.080001 4.1261E-05 515.7636041611266 35.162 1.045 38.836 38.506 39.551 3.6735 238 104 3 0 0 0 0.01093 6 5747 5711;5747;5784;5853;5905;5945 69.338 27.383 1 713950 19201 16616 12117 12124 22922;22923;22924;22925;22926;22927 22923 -0.00046536310719602625 KSYAGYQTL 9 Unmodified _KSYAGYQTL_ 0 0 0 nc|ENSG00000005893|P13473-2|LAMP2 nc|ENSG00000005893|P13473-2|LAMP2 nc|ENSG00000005893|P13473-2|LAMP2 MULTI-MSMS UPN48_class_I_Rep_3 7 515.7637939453125 2 515.763832 1029.51311 0.24718 0.00012749 -0.1556 -8.0254E-05 0.091579 4.7233E-05 515.7636574668796 35.115 1.0891 38.787 38.448 39.537 3.6721 266 115 3 0 0 0 0.0087738 6 5651 5579;5614;5651;5682;5720;5753 100.71 34.252 1 756040 19202 16616 12117 12124 22928;22929;22930;22931;22932;22933 22930 -0.00046536310719602625 KSYDNFKKK 9 Unmodified _KSYDNFKKK_ 0 0 0 Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|8|1|sense Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|8|1|sense Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.8063354492188 2 579.319306 1156.62406 0.4275 0.00024766 -0.4746 -0.00027495 -0.047105 -2.7289E-05 579.3190658131027 40.033 0.79583 43.774 43.409 44.205 3.7413 141 83 2 0 0 0 0.35123 1 7105 7105 10.8 0 1 230800 19203 33286 12118 12125 22934 22934 0.05201103397348561 KSYHLCLYKYT 11 Unmodified _KSYHLCLYKYT_ 0 0 0 Tigger3b_dup2031|chr5:37632037-37633199:+|1.5732190041467229|0.0116509111700786|7.08|151.0|30|2|sense Tigger3b_dup2031|chr5:37632037-37633199:+|1.5732190041467229|0.0116509111700786|7.08|151.0|30|2|sense Tigger3b_dup2031|chr5:37632037-37633199:+|1.5732190041467229|0.0116509111700786|7.08|151.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 473.28143310546875 3 473.576079 1417.70641 NaN NaN NaN NaN NaN NaN NaN 22.419 1 22.419 21.919 22.919 0 0 0 0 0.38417 1 2657 2657 1.2148 0 1 19204 33370 12119 12126 22935 22935 0.014262574140047946 KSYKLFID 8 Unmodified _KSYKLFID_ 0 0 0 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 MSMS UPN46_class_I_Rep_3 1 507.29534912109375 2 507.286943 1012.55933 NaN NaN NaN NaN NaN NaN NaN 109.87 1 109.87 109.37 110.37 0 0 0 0 0.40331 1 27027 27027 6.2058 0.44535 1 + 19205 18525 12120 12127 22936 22936 0.05355528591371694 KSYLAVRL 8 Unmodified _KSYLAVRL_ 0 0 0 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 MULTI-MSMS UPN48_class_I_Rep_1 5 475.2950744628906 2 475.295102 948.575651 0.1149 5.4611E-05 -0.13643 -6.4846E-05 -0.021534 -1.0235E-05 475.2949731094437 42.13 0.65478 45.638 45.291 45.946 3.5079 107 65 2 0 0 0 0.82752 1 7749 7749 22.736 7.898 1 210520 19206 5662 12121 12128 22937 22937 0.09930654548145412 KSYLAVRL 8 Unmodified _KSYLAVRL_ 0 0 0 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 MULTI-MSMS UPN48_class_I_Rep_2 6 475.295166015625 2 475.295102 948.575651 0.15834 7.5259E-05 -0.12355 -5.8721E-05 0.034793 1.6537E-05 475.29491988824464 41.7 0.71655 45.451 45.188 45.905 3.7509 120 76 2 0 0 0 0.82752 2 7596 7596;7674 36.127 9.2434 1 207210 19207 5662 12121 12128 22938;22939 22938 0.09930654548145412 KSYLAVRL 8 Unmodified _KSYLAVRL_ 0 0 0 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 MULTI-MSMS UPN48_class_I_Rep_3 7 475.29486083984375 2 475.295102 948.575651 0.12754 6.0617E-05 -0.16276 -7.7357E-05 -0.035221 -1.674E-05 475.29496413176753 41.884 0.78351 45.53 45.198 45.981 3.6458 129 82 2 0 0 0 0.82752 3 7604 7568;7604;7641 19.257 4.4187 1 180860 19208 5662 12121 12128 22940;22941;22942 22941 0.09930654548145412 KSYLLLLWFL 10 Unmodified _KSYLLLLWFL_ 0 0 0 REV__L1M2_dup5225|chrX:41178417-41179603:-|1.193166496839302|0.0158496088480588|6.23|149.0|76|3|anti-sense REV__L1M2_dup5225|chrX:41178417-41179603:-|1.193166496839302|0.0158496088480588|6.23|149.0|76|3|anti-sense MSMS UPN46_class_I_Rep_3 1 648.3936157226562 2 648.391742 1294.76893 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.79 103.29 104.29 0 0 0 0 0.53105 1 25327 25327 0.45834 0 1 + 19209 24220 12122 12129 22943 22943 0.13333771544512274 KSYLRLGL 8 Unmodified _KSYLRLGL_ 0 0 0 REV__L1PB4_dup5848|chr13:41077505-41078545:+|2.104417287074727|0.3611647884942381|2.54|151.0|31|3|sense REV__L1PB4_dup5848|chr13:41077505-41078545:+|2.104417287074727|0.3611647884942381|2.54|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 475.29486083984375 2 475.295102 948.575651 0.1149 5.4611E-05 -0.13643 -6.4846E-05 -0.021534 -1.0235E-05 475.2949731094437 42.13 0.65478 45.638 45.291 45.946 3.5079 107 65 2 0 0 0 0.82752 2 7675 7675;7713 11.64 0 1 210520 + 19210 30611 12123 12130 22944;22945 22944 0.09930654548122675 KSYLRLGL 8 Unmodified _KSYLRLGL_ 0 0 0 REV__L1PB4_dup5848|chr13:41077505-41078545:+|2.104417287074727|0.3611647884942381|2.54|151.0|31|3|sense REV__L1PB4_dup5848|chr13:41077505-41078545:+|2.104417287074727|0.3611647884942381|2.54|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 475.2948913574219 2 475.295102 948.575651 0.15834 7.5259E-05 -0.12355 -5.8721E-05 0.034793 1.6537E-05 475.29491988824464 41.7 0.71655 45.451 45.188 45.905 3.7509 120 76 2 0 0 0 0.82752 1 7634 7634 20.454 0 1 207210 + 19211 30611 12123 12130 22946 22946 0.09930654548122675 KSYLRLGL 8 Unmodified _KSYLRLGL_ 0 0 0 REV__L1PB4_dup5848|chr13:41077505-41078545:+|2.104417287074727|0.3611647884942381|2.54|151.0|31|3|sense REV__L1PB4_dup5848|chr13:41077505-41078545:+|2.104417287074727|0.3611647884942381|2.54|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 475.2947692871094 2 475.295102 948.575651 0.12754 6.0617E-05 -0.16276 -7.7357E-05 -0.035221 -1.674E-05 475.29496413176753 41.884 0.78351 45.53 45.198 45.981 3.6458 129 82 2 0 0 0 0.82752 1 7539 7539 11.64 0 1 180860 + 19212 30611 12123 12130 22947 22947 0.09930654548122675 KSYLSRLQY 9 Unmodified _KSYLSRLQY_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_1 5 579.8064575195312 2 579.319306 1156.62406 0.42899 0.00024852 -0.41795 -0.00024212 0.011043 6.3974E-06 579.319156835125 40.343 0.71416 43.848 43.593 44.307 3.5048 97 64 2 0 0 0 0.35123 1 7191 7191 10.8 1.4164 1 126440 19213 3407 12124 12131 22948 22948 0.05201103397371298 KSYLSRLQY 9 Unmodified _KSYLSRLQY_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_2 6 579.8064575195312 2 579.319306 1156.62406 0.4275 0.00024766 -0.4746 -0.00027495 -0.047105 -2.7289E-05 579.3190658131027 40.033 0.79583 43.774 43.409 44.205 3.7413 141 83 2 0 0 0 0.026395 3 7142 7092;7099;7142 59.368 19.129 1 230800 19214 3407 12124 12131 22949;22950;22951 22951 0.05201103397371298 KSYLSRLQY 9 Unmodified _KSYLSRLQY_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_3 7 579.8062744140625 2 579.319306 1156.62406 0.39728 0.00023015 -0.40728 -0.00023595 -0.010002 -5.7946E-06 579.3190699518311 40.211 0.70823 43.862 43.399 44.107 3.6509 118 68 2 0 0 0 0.39745 1 7020 7020 8.1555 2.4237 1 147070 19215 3407 12124 12131 22952 22952 0.05201103397371298 KSYNPSIIK 9 Unmodified _KSYNPSIIK_ 0 0 0 REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|18|3|sense REV__L1M5_dup47609|chr17:5341286-5341888:+|2.275264385163893|0.2398572838060747|3.25|151.0|18|3|sense MSMS UPN48_class_I_Rep_2 6 525.30224609375 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 39.619 1 43.348 42.848 43.848 3.7297 0 0 0 0.27207 1 7052 7052 12.241 0 1 + 19216 24686 12125 12132 22953 22953 0.06934315994362805 KSYPGLTSY 9 Unmodified _KSYPGLTSY_ 0 0 0 ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF;nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2 ENST00000470902.5_1_9:130912815-130915395:+|nuORF ENST00000470902.5_1_9:130912815-130915395:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 508.2581481933594 2 508.258382 1014.50221 0.24985 0.00012699 -0.19207 -9.7619E-05 0.057788 2.9371E-05 508.2581420738827 39.318 0.68694 42.823 42.473 43.16 3.5048 112 65 3 0 0 0 0.073198 4 6900 6862;6900;6938;6976 40.239 17.818 1 203110 19217 3501 12126 12133 22954;22955;22956;22957 22955 -0.0044593868499305245 KSYPGLTSY 9 Unmodified _KSYPGLTSY_ 0 0 0 ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF;nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2 ENST00000470902.5_1_9:130912815-130915395:+|nuORF ENST00000470902.5_1_9:130912815-130915395:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 508.258056640625 2 508.258382 1014.50221 0.26903 0.00013674 -0.36728 -0.00018667 -0.098251 -4.9937E-05 508.2581048651333 38.991 0.67617 42.72 42.405 43.081 3.7297 137 64 3 0 0 0 0.10225 3 6844 6803;6844;6889 33.445 16.332 1 209160 19218 3501 12126 12133 22958;22959;22960 22959 -0.0044593868499305245 KSYPGLTSY 9 Unmodified _KSYPGLTSY_ 0 0 0 ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF;nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2 ENST00000470902.5_1_9:130912815-130915395:+|nuORF ENST00000470902.5_1_9:130912815-130915395:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 508.25872802734375 2 508.258382 1014.50221 0.18586 9.4466E-05 -0.25444 -0.00012932 -0.068572 -3.4852E-05 508.2582484653307 39.077 0.68652 42.733 42.402 43.088 3.6557 134 61 3 0 0 0 0.12096 3 6745 6745;6785;6849 29.841 12.728 1 222510 19219 3501 12126 12133 22961;22962;22963 22961 -0.0044593868499305245 KSYSRIVYP 9 Unmodified _KSYSRIVYP_ 0 0 0 L1MA3_dup6326|chr11:31385743-31390062:+|1.427362471674382|0.0854743694721729|4.06|151.0|115|3|sense L1MA3_dup6326|chr11:31385743-31390062:+|1.427362471674382|0.0854743694721729|4.06|151.0|115|3|sense L1MA3_dup6326|chr11:31385743-31390062:+|1.427362471674382|0.0854743694721729|4.06|151.0|115|3|sense MSMS UPN48_class_I_Rep_1 5 556.8080444335938 2 556.808574 1111.60259 NaN NaN NaN NaN NaN NaN NaN 75.625 1 79.125 78.625 79.625 3.4996 0 0 0 0.39518 1 17928 17928 1.8442 0.19162 1 19220 9586 12127 12134 22964 22964 0.051257183686630015 KSYWWMYF 8 Unmodified _KSYWWMYF_ 0 0 0 L1ME3D_dup4056|chr20:32389061-32389486:-|1.7645748966010013|0.0147555263119906|6.9|151.0|29|3|anti-sense L1ME3D_dup4056|chr20:32389061-32389486:-|1.7645748966010013|0.0147555263119906|6.9|151.0|29|3|anti-sense L1ME3D_dup4056|chr20:32389061-32389486:-|1.7645748966010013|0.0147555263119906|6.9|151.0|29|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 605.772705078125 2 605.773145 1209.53174 0.47652 0.00028866 -1.0417 -0.00063101 -0.56514 -0.00034235 605.7725240712285 50.901 0.78195 54.24 53.922 54.704 3.3386 72 42 2 0 0 0 0.72333 1 11179 11179 24.674 0.65332 1 151100 19221 12797 12128 12135 22965 22965 -0.06464697940509723 KTAKGPEF 8 Unmodified _KTAKGPEF_ 0 0 0 REV__nc|ENSG00000177910|B4DYI2|SPATA31C2 REV__nc|ENSG00000177910|B4DYI2|SPATA31C2 MSMS UPN47_class_I_Rep_1 2 439.24420166015625 2 439.242535 876.470518 NaN NaN NaN NaN NaN NaN NaN 57.959 1 61.396 60.896 61.896 3.437 0 0 0 0.40501 1 13346 13346 3.9444 1.3669 1 + 19222 32067 12129 12136 22966 22966 0.027341133517211347 KTAKRIGHA 9 Unmodified _KTAKRIGHA_ 0 0 0 REV__ENST00000492017.3_1_15:90749834-90750065:+|nuORF REV__ENST00000492017.3_1_15:90749834-90750065:+|nuORF MSMS UPN47_class_I_Rep_1 2 491.30902099609375 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 109.18 1 112.79 112.29 113.29 3.6046 0 0 0 0.39326 1 26911 26911 2.3027 1.5091 1 + 19223 22635 12130 12137 22967 22967 0.09687691011185962 KTALKEPYV 9 Unmodified _KTALKEPYV_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MSMS UPN47_class_I_Rep_1 2 524.8034057617188 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 61.146 1 64.527 64.027 65.027 3.3815 0 0 0 0.37692 1 14317 14317 6.2058 0.97511 1 + 19224 19202 12131 12138 22968 22968 0.07455200137110296 KTAMLQVLA 9 Unmodified _KTAMLQVLA_ 0 0 0 ENSG00000172602|ENST00000309739|RND1 ENSG00000172602|ENST00000309739|RND1 ENSG00000172602|ENST00000309739|RND1 MSMS UPN48_class_I_Rep_3 7 487.7904357910156 2 487.788795 973.563038 NaN NaN NaN NaN NaN NaN NaN 76.607 1 80.19 79.69 80.69 3.5831 0 0 0 0.38639 1 18048 18048 3.9444 1.6417 1 19225 4584 12132 12139 22969 22969 0.07519875093578321 KTARVTKQS 9 Unmodified _KTARVTKQS_ 0 0 0 REV__L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|70|2|sense REV__L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|70|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 509.8040466308594 2 509.803823 1017.59309 0.31215 0.00015913 -0.0666 -3.3953E-05 0.24555 0.00012518 509.80363952371835 77.331 0.61333 80.943 80.382 80.995 3.6116 118 62 3 0 0 0 0.1249 1 18177 18177 1.4819 0.68827 1 248190 + 19226 26166 12133 12140 22970 22970 0.08499950083137264 KTATKSIVPS 10 Unmodified _KTATKSIVPS_ 0 0 0 REV__nc|ENSG00000184368|Q96T17-5|MAP7D2 REV__nc|ENSG00000184368|Q96T17-5|MAP7D2 MSMS UPN48_class_I_Rep_2 6 516.3098754882812 2 516.308406 1030.60226 NaN NaN NaN NaN NaN NaN NaN 97.644 1 101.42 100.92 101.92 3.779 0 0 0 0.53105 1 23198 23198 3.2813 0.28607 1 + 19227 20818 12134 12141 22971 22971 0.08818298648793643 KTCYQLKYQ 9 Unmodified _KTCYQLKYQ_ 0 0 0 L1ME3G_dup5307|chr5:132925737-132926130:+|1.3592244237792674|0.0447538997847863|4.92|151.0|2|1|sense L1ME3G_dup5307|chr5:132925737-132926130:+|1.3592244237792674|0.0447538997847863|4.92|151.0|2|1|sense L1ME3G_dup5307|chr5:132925737-132926130:+|1.3592244237792674|0.0447538997847863|4.92|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 587.7988891601562 2 587.799891 1173.58523 NaN NaN NaN NaN NaN NaN NaN 45.813 1 49.45 48.95 49.95 3.6369 0 0 0 0.39598 1 8815 8815 1.6526 0 1 19228 12840 12135 12142 22972 22972 0.0053805477134574176 KTDHSITY 8 Unmodified _KTDHSITY_ 0 0 0 nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2 nc|ENSG00000118257|O60462-4|NRP2 nc|ENSG00000118257|O60462-4|NRP2 MULTI-MSMS UPN46_class_I_Rep_3 1 482.74017333984375 2 482.740357 963.46616 0.27428 0.00013241 -0.48259 -0.00023297 -0.20831 -0.00010056 482.74001801993916 104.16 0.28984 104.16 104.07 104.36 0 61 32 3 0 0 0 0.82752 1 25439 25439 5.2307 0.90143 1 871760 19229 16670 12136 12143 22973 22973 -0.0170339586186401 KTDHSITY 8 Unmodified _KTDHSITY_ 0 0 0 nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2 nc|ENSG00000118257|O60462-4|NRP2 nc|ENSG00000118257|O60462-4|NRP2 MULTI-MSMS UPN48_class_I_Rep_3 7 482.7400207519531 2 482.740357 963.46616 0.22644 0.00010931 -0.61566 -0.0002972 -0.38922 -0.00018789 482.73994577949907 99.768 0.21028 103.62 103.58 103.79 3.8537 51 29 2 0 0 0 0.82752 1 23623 23623 5.2307 0 1 505960 19230 16670 12136 12143 22974 22974 -0.0170339586186401 KTDHSITY 8 Unmodified _KTDHSITY_ 0 0 0 nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2 nc|ENSG00000118257|O60462-4|NRP2 nc|ENSG00000118257|O60462-4|NRP2 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 482.740357 963.46616 0.27428 0.00013241 -0.48259 -0.00023297 -0.20831 -0.00010056 482.74001801993916 104.16 0.28984 104.16 104.07 104.36 0 0 0 NaN 5.2307 61 32 3 NaN NaN NaN NaN 0 NaN NaN 0 871760 19231 16670 12136 12143 -0.0170339586186401 KTDKLLATV 9 Unmodified _KTDKLLATV_ 0 0 0 L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|35|2|sense L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|35|2|sense L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.80572509765625 2 494.8055 987.596446 0.27896 0.00013803 0.0030448 1.5066E-06 0.28201 0.00013954 494.8055220201244 75.275 0.32465 78.588 78.431 78.756 3.3127 34 28 2 0 0 0 0.48846 1 18589 18589 1.8442 0 1 68591 19232 12333 12137 12144 22975 22975 0.10215200137156444 KTDKVVIAHP 10 Unmodified _KTDKVVIAHP_ 0 0 0 L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|54|2|anti-sense L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|54|2|anti-sense L1MB3_dup10307|chr10:68019520-68020484:+|3.561172011523456|0.2291752660866943|3.96|151.0|54|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.3297729492188 2 554.329673 1106.64479 NaN NaN NaN NaN NaN NaN NaN 110.53 1 114.16 113.66 114.66 3.6326 0 0 0 0.53105 1 26828 26828 1.4819 0 1 19233 10312 12138 12145 22976 22976 0.09573693777042536 KTDLDLQQY 9 Unmodified _KTDLDLQQY_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MULTI-MSMS UPN47_class_I_Rep_1 2 562.2847900390625 2 562.285128 1122.5557 0.03204 1.8015E-05 0.29773 0.00016741 0.32977 0.00018542 562.2849819939502 42.539 0.93483 46.226 45.83 46.765 3.6875 141 65 3 0 0 0 0.006828 7 8630 8594;8630;8672;8711;8746;8751;8755 72.968 23.035 1 342420 19234 4524 12139 12146 22977;22978;22979;22980;22981;22982;22983 22978 -0.0006718597312556085 KTDLDLQQY 9 Unmodified _KTDLDLQQY_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MULTI-MSMS UPN47_class_I_Rep_2 3 562.28466796875 2 562.285128 1122.5557 0.1085 6.1009E-05 0.3392 0.00019073 0.4477 0.00025174 562.2850013906706 42.788 0.9077 46.149 45.841 46.748 3.3611 133 61 3 0 0 0 0.053261 4 8801 8718;8801;8839;8897 47.594 7.6371 1 352750 19235 4524 12139 12146 22984;22985;22986;22987 22985 -0.0006718597312556085 KTDLDLQQY 9 Unmodified _KTDLDLQQY_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MULTI-MSMS UPN47_class_I_Rep_3 4 562.2850952148438 2 562.285128 1122.5557 0.11122 6.254E-05 -0.017032 -9.577E-06 0.094192 5.2963E-05 562.2850167374103 42.941 0.83357 46.181 45.792 46.625 3.2394 128 53 3 0 0 0 0.0073203 6 8876 8797;8835;8876;8919;8960;8970 71.708 23.959 1 331710 19236 4524 12139 12146 22988;22989;22990;22991;22992;22993 22990 -0.0006718597312556085 KTDLDLQQY 9 Unmodified _KTDLDLQQY_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MULTI-MSMS UPN47_class_I_Rep_3 4 562.2854614257812 2 562.285128 1122.5557 0.13636 7.6674E-05 3.801 0.0021373 3.9374 0.0022139 562.7906492517491 43.438 0.061176 46.68 46.628 46.689 3.2419 8 5 2 0 0 0 0.33908 1 9016 9016 11.495 0.67078 1 40359 19237 4524 12139 12146 22994 22994 -0.0006718597312556085 KTDTISYH 8 Unmodified _KTDTISYH_ 0 0 0 HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|64|2|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|64|2|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|64|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 482.740234375 2 482.740357 963.46616 0.12517 6.0423E-05 -0.28985 -0.00013992 -0.16469 -7.9501E-05 482.74008738295754 99.832 0.39049 103.44 103.34 103.73 3.6065 103 46 3 0 0 0 0.82752 1 24129 24129 5.7604 0.52976 1 865600 19238 8380 12140 12147 22995 22995 -0.017033958618526412 KTDTISYH 8 Unmodified _KTDTISYH_ 0 0 0 HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|64|2|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|64|2|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|64|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 482.7400207519531 2 482.740357 963.46616 0.24189 0.00011677 -0.58145 -0.00028069 -0.33957 -0.00016392 482.73990884143416 99.33 0.15226 103.09 102.97 103.12 3.7575 40 21 2 0 0 0 0.82752 1 23588 23588 5.7604 0.52976 1 883730 19239 8380 12140 12147 22996 22996 -0.017033958618526412 KTEDPDLPAFY 11 Unmodified _KTEDPDLPAFY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000574728.1_1_17:1583983-1584260:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN47_class_I_Rep_1 2 648.3112182617188 2 648.311343 1294.60813 NaN NaN NaN NaN NaN NaN NaN 57.215 1 60.672 60.172 61.172 3.4572 0 0 0 0.37931 1 13124 13124 7.1017 1.8711 1 19240 4671 12141 12148 22997 22997 -0.02738647630167179 KTEDPDLPAFY 11 Unmodified _KTEDPDLPAFY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000574728.1_1_17:1583983-1584260:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN47_class_I_Rep_3 4 648.3118896484375 2 648.311343 1294.60813 NaN NaN NaN NaN NaN NaN NaN 57.405 1 60.573 60.073 61.073 3.1681 0 0 0 0.29037 1 13263 13263 12.873 7.6419 1 19241 4671 12141 12148 22998 22998 -0.02738647630167179 KTEEKLFY 8 Unmodified _KTEEKLFY_ 0 0 0 L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 529.281982421875 2 529.281857 1056.54916 0.37176 0.00019676 -0.0066528 -3.5212E-06 0.36511 0.00019324 529.2817717537624 55.214 0.77817 58.722 58.383 59.161 3.5082 113 48 3 0 0 0 0.82752 3 11815 11724;11815;11854 21.747 21.747 1 404900 19242 13139 12142 12149 22999;23000;23001 23000 0.023149208661379816 KTEEKLFY 8 Unmodified _KTEEKLFY_ 0 0 0 L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2821044921875 2 529.281857 1056.54916 0.539 0.00028528 -0.16428 -8.6953E-05 0.37472 0.00019833 529.2817345832675 55.208 0.74615 58.764 58.364 59.11 3.5559 102 42 3 0 0 0 0.82752 2 11730 11730;11775 25.399 2.1441 1 441410 19243 13139 12142 12149 23002;23003 23002 0.023149208661379816 KTEEKLFY 8 Unmodified _KTEEKLFY_ 0 0 0 L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 529.2820434570312 2 529.281857 1056.54916 0.35845 0.00018972 0.13802 7.3049E-05 0.49647 0.00026277 529.2818403189704 55.059 0.83718 58.628 58.367 59.204 3.5694 112 47 3 0 0 0 0.82752 1 11613 11613 19.257 2.1441 1 413990 19244 13139 12142 12149 23004 23004 0.023149208661379816 KTEESLHHE 9 Unmodified _KTEESLHHE_ 0 0 0 REV__ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|1|intron REV__ENSG00000012048.23,BRCA1,chr17,-,I30.1,43045803,43047642|27|5.47|1|intron MSMS UPN47_class_I_Rep_1 2 555.2645263671875 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 20.011 1 23.623 23.123 24.123 3.6118 0 0 0 0.39518 1 1935 1935 1.8442 0 1 + 19245 17583 12143 12150 23005 23005 -0.03501527292746687 KTEKHQLEV 9 Unmodified _KTEKHQLEV_ 0 0 0 nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1 nc|ENSG00000140688|Q96GQ5-2|RUSF1 nc|ENSG00000140688|Q96GQ5-2|RUSF1 MSMS UPN46_class_I_Rep_3 1 556.308837890625 2 556.308938 1110.60332 NaN NaN NaN NaN NaN NaN NaN 85.69 1 85.69 85.19 86.19 0 0 0 0 0.3967 1 20455 20455 1.4819 0.15237 1 19246 3189 12144 12151 23006 23006 0.0524451301771478 KTELHRRLK 9 Unmodified _KTELHRRLK_ 0 0 0 REV__ENSG00000236287|ENST00000413761|ZBED5 REV__ENSG00000236287|ENST00000413761|ZBED5 MSMS UPN47_class_I_Rep_1 2 590.8663330078125 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 97.786 1 101.57 101.07 102.07 3.7861 0 0 0 0.4007 1 24223 24223 0.52476 0 1 + 19247 21310 12145 12152 23007 23007 0.13735296028107769 KTEMHEHQHGE 11 Unmodified _KTEMHEHQHGE_ 0 0 0 HERVL66-int_dup18|chr4:451746-453531:+|1.991430211987746|0.4109030204960169|2.28|149.0|94|3|anti-sense HERVL66-int_dup18|chr4:451746-453531:+|1.991430211987746|0.4109030204960169|2.28|149.0|94|3|anti-sense HERVL66-int_dup18|chr4:451746-453531:+|1.991430211987746|0.4109030204960169|2.28|149.0|94|3|anti-sense MSMS UPN48_class_I_Rep_3 7 454.8670959472656 3 454.866692 1361.57825 NaN NaN NaN NaN NaN NaN NaN 119.96 1 123.53 123.03 124.03 3.566 0 0 0 0.38417 1 28509 28509 0.36667 0.097654 1 19248 8401 12146 12153 23008 23008 -0.0880790984720079 KTETWNGKL 9 Unmodified _KTETWNGKL_ 0 0 0 ENSG00000113369|ENST00000265138|ARRDC3 ENSG00000113369|ENST00000265138|ARRDC3 ENSG00000113369|ENST00000265138|ARRDC3 MULTI-MSMS UPN47_class_I_Rep_1 2 538.7911376953125 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.44742 1 12605 12605 5.2969 5.2969 1 312930 19249 2043 12147 12154 23009 23009 0.03144841471953441 KTFARYLSF 9 Unmodified _KTFARYLSF_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 566.8121337890625 2 566.811116 1131.60768 0.48356 0.00027409 0.093859 5.32E-05 0.57742 0.00032729 567.3126580093428 51.178 0.7903 54.846 54.315 55.105 3.6679 70 48 2 0 0 0 0.33908 1 10442 10442 11.495 2.7493 1 182650 19250 1110 12148 12155 23010 23010 0.04714022231269155 KTFHRNMNK 9 Unmodified _KTFHRNMNK_ 0 0 0 REV__L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|119|3|sense REV__L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|119|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.3089599609375 2 588.308749 1174.60295 0.40104 0.00023593 -0.24218 -0.00014247 0.15886 9.3459E-05 588.3085101365463 47.655 0.98935 51.177 50.759 51.749 3.5219 181 77 3 0 0 0 0.47197 1 9608 9608 3.5965 0.31518 1 662370 + 19251 29972 12149 12156 23011 23011 0.022628148168678308 KTFLFYHPW 9 Unmodified _KTFLFYHPW_ 0 0 0 MLT1H2-int_dup4|chr1:44478745-44479117:-|4.101598367513108|0.0020405418595221|10.97|149.0|18|2|anti-sense MLT1H2-int_dup4|chr1:44478745-44479117:-|4.101598367513108|0.0020405418595221|10.97|149.0|18|2|anti-sense MLT1H2-int_dup4|chr1:44478745-44479117:-|4.101598367513108|0.0020405418595221|10.97|149.0|18|2|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8228759765625 2 619.821484 1237.62842 NaN NaN NaN NaN NaN NaN NaN 83.161 1 86.7 86.2 87.2 3.5386 0 0 0 0.40038 1 20792 20792 0.6015 0 1 19252 16451 12150 12157 23012 23012 0.019106126109363686 KTFLKKDT 8 Unmodified _KTFLKKDT_ 0 0 0 L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|32|2|sense L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|32|2|sense L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|32|2|sense MSMS UPN47_class_I_Rep_2 3 490.7785949707031 2 490.792392 979.570232 NaN NaN NaN NaN NaN NaN NaN 64.348 1 67.604 67.104 68.104 3.2556 0 0 0 0.40625 1 15323 15323 2.3027 0 1 19253 9845 12151 12158 23013 23013 0.07962930965641135 KTGKASPR 8 Unmodified _KTGKASPR_ 0 0 0 L1ME3A_dup13413|chr16:75070524-75070925:-|1.1972682371731245|0.0051464625254977|7.86|151.0|7|2|sense L1ME3A_dup13413|chr16:75070524-75070925:-|1.1972682371731245|0.0051464625254977|7.86|151.0|7|2|sense L1ME3A_dup13413|chr16:75070524-75070925:-|1.1972682371731245|0.0051464625254977|7.86|151.0|7|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 422.2510070800781 2 422.753601 843.49265 -0.11512 -4.8669E-05 -2.2621 -0.00095633 -2.3773 -0.001005 422.7528557432627 110.51 0.092957 114.14 114.1 114.2 3.6326 10 7 2 0 0 0 0.72333 1 26824 26824 4.3292 0 1 761320 19254 12642 12152 12159 23014 23014 0.06464337820136734 KTGLVIYI 8 Unmodified _KTGLVIYI_ 0 0 0 REV__MER2_dup1735|chr3:63989456-63989795:+|1.31314901958336|0.4182264192336343|1.65|151.0|4|2|sense REV__MER2_dup1735|chr3:63989456-63989795:+|1.31314901958336|0.4182264192336343|1.65|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 453.78485107421875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 55.15 1 58.328 57.828 58.828 3.1779 0 0 0 0.40738 1 12580 12580 0.79363 0 1 + 19255 31141 12153 12160 23015 23015 0.10204733942305211 KTGNSLHLWW 10 Unmodified _KTGNSLHLWW_ 0 0 0 L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|8|2|sense L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|8|2|sense L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 621.32470703125 2 621.324922 1240.63529 NaN NaN NaN NaN NaN NaN NaN 44.176 1 44.176 43.676 44.676 0 0 0 0 0.53105 1 8881 8881 2.9952 0.49676 1 19256 12940 12154 12161 23016 23016 0.024599254915074198 KTGWTLKF 8 Unmodified _KTGWTLKF_ 0 0 0 REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|122|3|anti-sense REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|122|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7837219238281 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 53.027 1 56.222 55.722 56.722 3.1948 0 0 0 0.40625 1 11928 11928 2.3027 0 1 + 19257 32155 12155 12162 23017 23017 0.05850965656816243 KTHDHFNRL 9 Unmodified _KTHDHFNRL_ 0 0 0 L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|79|2|sense L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|79|2|sense L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|79|2|sense MSMS UPN47_class_I_Rep_2 3 584.3030395507812 2 584.304521 1166.59449 NaN NaN NaN NaN NaN NaN NaN 46.915 1 50.266 49.766 50.766 3.3515 0 0 0 0.39518 1 10025 10025 1.8442 0.36234 1 19258 15346 12156 12163 23018 23018 0.017855841718983356 KTHFMKKWR 9 Unmodified _KTHFMKKWR_ 0 0 0 REV__L1M2_dup1010|chr2:135305260-135306273:-|1.0928243923756988|0.0913412516827743|3.58|151.0|35|3|sense REV__L1M2_dup1010|chr2:135305260-135306273:-|1.0928243923756988|0.0913412516827743|3.58|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 631.3535766601562 2 631.35296 1260.69137 NaN NaN NaN NaN NaN NaN NaN 67.453 1 70.814 70.314 71.314 3.3611 0 0 0 0.40038 1 16222 16222 0.6015 0 1 + 19259 24177 12157 12164 23019 23019 0.0714485512733063 KTHHFPFL 8 Unmodified _KTHHFPFL_ 0 0 0 REV__nc|nan|Q8IXR9-2|C12orf56 REV__nc|nan|Q8IXR9-2|C12orf56 MSMS UPN47_class_I_Rep_3 4 513.780029296875 2 513.779619 1025.54469 NaN NaN NaN NaN NaN NaN NaN 34.336 1 37.6 37.1 38.1 3.2639 0 0 0 0.40738 1 6232 6232 0.79363 0 1 + 19260 20853 12158 12165 23020 23020 0.03293501233883944 KTHLHQCE 8 Unmodified _KTHLHQCE_ 0 0 0 REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B MSMS UPN47_class_I_Rep_1 2 498.2400207519531 2 498.240001 994.465449 NaN NaN NaN NaN NaN NaN NaN 88.582 1 92.238 91.738 92.738 3.6563 0 0 0 0.40753 1 22152 22152 0.6015 0 1 + 19261 18440 12159 12166 23021 23021 -0.03200513782553571 KTHPSVVPDL 10 Unmodified _KTHPSVVPDL_ 0 0 0 REV__L1PA15_dup6645|chr12:100081407-100082783:-|1.1556692680981144|0.1096559418224808|3.4|151.0|3|1|sense REV__L1PA15_dup6645|chr12:100081407-100082783:-|1.1556692680981144|0.1096559418224808|3.4|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.8060302734375 2 546.806031 1091.59751 0.02121 1.1598E-05 0.20259 0.00011078 0.2238 0.00012238 546.8061295967184 29.589 0.72002 33.081 32.756 33.476 3.4923 97 58 2 0 0 0 0.54822 1 4724 4724 5.7319 2.1354 1 87760 + 19262 29270 12160 12167 23022 23022 0.05537414506034111 KTHQCAGFRR 10 Unmodified _KTHQCAGFRR_ 0 0 0 L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|123|3|sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|123|3|sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|123|3|sense MSMS UPN46_class_I_Rep_3 1 401.8778991699219 3 401.876974 1202.60909 NaN NaN NaN NaN NaN NaN NaN 22.106 1 22.106 21.606 22.606 0 0 0 0 0.53105 1 2575 2575 1.3296 0.25818 1 19263 14619 12161 12168 23023 23023 0.015893330483550017 KTIALNLK 8 Unmodified _KTIALNLK_ 0 0 0 nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1 nc|ENSG00000110768|P32780-2|GTF2H1 nc|ENSG00000110768|P32780-2|GTF2H1 MULTI-MSMS UPN48_class_I_Rep_3 7 450.79669189453125 2 450.797478 899.580402 0.068903 3.1061E-05 -0.72694 -0.0003277 -0.65803 -0.00029664 450.797076791866 33.33 0.6196 37.019 36.761 37.38 3.6896 95 66 2 0 0 0 0.82752 1 5222 5222 3.9444 0 1 74229 19264 1952 12162 12169 23024 23024 0.12659538690877525 KTICAWAF 8 Unmodified _KTICAWAF_ 0 0 0 L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense MSMS UPN48_class_I_Rep_1 5 470.2404479980469 2 470.241481 938.468409 NaN NaN NaN NaN NaN NaN NaN 44.567 1 48.08 47.58 48.58 3.5132 0 0 0 0.4044 1 8498 8498 4.756 0.42677 1 19265 8984 12163 12170 23025 23025 -0.003286386577542544 KTICAWAF 8 Unmodified _KTICAWAF_ 0 0 0 L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense MSMS UPN48_class_I_Rep_2 6 470.2398681640625 2 470.241481 938.468409 NaN NaN NaN NaN NaN NaN NaN 44.164 1 47.925 47.425 48.425 3.7617 0 0 0 0.40604 1 8387 8387 2.5775 0.27475 1 19266 8984 12163 12170 23026 23026 -0.003286386577542544 KTICAWAF 8 Unmodified _KTICAWAF_ 0 0 0 L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|174|3|anti-sense MSMS UPN48_class_I_Rep_2 6 470.23907470703125 2 470.241481 938.468409 NaN NaN NaN NaN NaN NaN NaN 44.297 1 48.059 47.559 48.559 3.7617 0 0 0 0.4044 1 8427 8427 4.756 0 1 19267 8984 12163 12170 23027 23027 -0.003286386577542544 KTIDGILLL 9 Unmodified _KTIDGILLL_ 0 0 0 nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000139842|Q13619-2|CUL4A MULTI-MSMS UPN48_class_I_Rep_2 6 493.31829833984375 2 493.318243 984.621933 0.26966 0.00013303 0.0072945 3.5985E-06 0.27696 0.00013663 493.31816554953997 69.548 1.0931 73.069 72.684 73.777 3.5216 230 93 4 0 0 0 0.043452 1 16124 16124 51.63 5.6089 1 1458100 19268 3155 12164 12171 23028 23028 0.12900674659567812 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 570.8187255859375 2 570.818607 1139.62266 0.34206 0.00019526 0.09135 5.2144E-05 0.43341 0.0002474 570.8185026977748 70.52 0.31369 73.891 73.625 73.939 3.3713 71 31 3 0 0 0 0.12306 1 17127 17127 29.437 6.7791 1 311980 19269 1877 12165 12172 23029 23029 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 570.8193969726562 2 570.818607 1139.62266 0.34383 0.00019626 0.47239 0.00026965 0.81622 0.00046591 570.8187214988083 70.615 0.49722 73.986 73.939 74.436 3.3713 81 43 3 0 0 0 0.10956 1 17163 17163 32.037 7.0465 1 484460 19270 1877 12165 12172 23030 23030 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 570.8185424804688 2 570.818607 1139.62266 0.41572 0.0002373 0.27224 0.0001554 0.68797 0.0003927 570.81869163117 70.878 0.74016 74.161 73.834 74.574 3.2828 105 70 2 0 0 0 0.048729 1 17283 17283 49.527 7.5717 1 389170 19271 1877 12165 12172 23031 23031 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 570.8193359375 2 570.818607 1139.62266 0.44782 0.00025563 0.18679 0.00010662 0.63461 0.00036225 570.8186306029635 70.922 0.41569 74.133 73.772 74.188 3.2113 61 34 2 0 0 0 0.048729 1 17384 17384 49.527 7.5717 1 276620 19272 1877 12165 12172 23032 23032 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 570.8189086914062 2 570.818607 1139.62266 0.44862 0.00025608 0.76666 0.00043762 1.2153 0.0006937 570.8189301428092 71.073 0.71333 74.285 74.188 74.901 3.2113 78 61 2 0 0 0 0.10225 1 17425 17425 33.445 3.6043 1 357080 19273 1877 12165 12172 23033 23033 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 570.819091796875 2 570.818607 1139.62266 0.44377 0.00025331 -1.0393 -0.00059324 -0.59552 -0.00033993 570.8187494953809 71.013 0.53964 74.479 74.18 74.719 3.466 103 58 2 0 0 0 0.079935 2 16546 16546;16580 38.615 3.6827 1 257460 19274 1877 12165 12172 23034;23035 23034 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 571.316650390625 2 570.818607 1139.62266 0.47608 0.00027175 -1.466 -0.00083679 -0.98987 -0.00056504 570.818586065695 70.793 0.39647 74.329 74.052 74.449 3.5359 74 45 2 0 0 0 0.10225 1 16479 16479 33.445 2.1766 1 164300 19275 1877 12165 12172 23036 23036 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MSMS UPN48_class_I_Rep_2 6 570.8184204101562 2 570.818607 1139.62266 NaN NaN NaN NaN NaN NaN NaN 70.989 1 74.525 74.025 75.025 3.5359 0 0 0 0.16861 1 16537 16537 18.373 3.1246 1 19276 1877 12165 12172 23037 23037 0.0584346930859283 KTIDYIQFL 9 Unmodified _KTIDYIQFL_ 0 0 0 ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000588320.1_1_17:40720799-40723580:+|nuORF ENST00000588320.1_1_17:40720799-40723580:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 570.818607 1139.62266 0.52153 0.0002977 -0.85103 -0.00048579 -0.3295 -0.00018809 570.8186462157876 70.764 0.56616 74.283 74.044 74.61 3.5185 0.054426 -0.0010737 NaN 49.527 87 59 2 NaN NaN NaN NaN 0 NaN NaN 0 319130 19277 1877 12165 12172 0.0584346930859283 KTIHQQIQNA 10 Unmodified _KTIHQQIQNA_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|18|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|18|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 590.8251342773438 2 590.825286 1179.63602 -0.43664 -0.00025798 0.75032 0.00044331 0.31368 0.00018533 590.8257859182742 13.191 0.12359 16.564 16.535 16.658 3.3734 23 13 2 0 0 0 0.56354 1 268 268 1.3295 0 1 31589 + 19278 25075 12166 12173 23038 23038 0.05338720140593978 KTIHTTFI 8 Unmodified _KTIHTTFI_ 0 0 0 REV__L1ME4b_dup15713|chr13:24436956-24437676:+|1.906010993084143|0.4135719537444728|2.2|151.0|19|2|sense REV__L1ME4b_dup15713|chr13:24436956-24437676:+|1.906010993084143|0.4135719537444728|2.2|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 480.7792053222656 2 480.779285 959.544017 NaN NaN NaN NaN NaN NaN NaN 60.249 1 63.766 63.266 64.266 3.5169 0 0 0 0.4044 1 13220 13220 4.756 0 1 + 19279 28262 12167 12174 23039 23039 0.06262661794164615 KTIKALDGD 9 Unmodified _KTIKALDGD_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 MSMS UPN48_class_I_Rep_3 7 480.5196533203125 2 480.771657 959.528761 NaN NaN NaN NaN NaN NaN NaN 21.997 1 25.711 25.211 26.211 3.7144 0 0 0 0.39598 1 2172 2172 1.6526 0.85899 1 19280 4552 12168 12175 23040 23040 0.047377502063341126 KTIKYRKRC 9 Unmodified _KTIKYRKRC_ 0 0 0 L1ME2z_dup1209|chr3:49771339-49771930:+|1.08332702073909|0.0081511218175623|7.05|151.0|15|3|sense L1ME2z_dup1209|chr3:49771339-49771930:+|1.08332702073909|0.0081511218175623|7.05|151.0|15|3|sense L1ME2z_dup1209|chr3:49771339-49771930:+|1.08332702073909|0.0081511218175623|7.05|151.0|15|3|sense MSMS UPN48_class_I_Rep_3 7 598.35986328125 2 598.358242 1194.70193 NaN NaN NaN NaN NaN NaN NaN 83.668 1 87.396 86.896 87.896 3.7281 0 0 0 0.4007 1 19843 19843 0.52476 0 1 19281 12543 12169 12176 23041 23041 0.11236837781757458 KTILDPLTL 9 Unmodified _KTILDPLTL_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MSMS UPN48_class_I_Rep_1 5 507.3157958984375 2 507.3157 1012.61685 0.28791 0.00014606 -0.27932 -0.0001417 0.0085932 4.3594E-06 507.31553564833945 67.222 0.71185 70.673 70.325 71.036 3.4516 79 47 3 0 0 0 0.20317 1 15483 15483 20.415 1.0526 1 197570 19282 3613 12170 12177 23042 23042 0.11104370796954299 KTILDPLTL 9 Unmodified _KTILDPLTL_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MSMS UPN48_class_I_Rep_3 7 507.3157653808594 2 507.3157 1012.61685 0.32171 0.00016321 -0.19896 -0.00010093 0.12276 6.2277E-05 507.3155304102082 66.844 0.68905 70.352 70.089 70.778 3.5077 75 44 2 0 0 0 0.15547 1 15221 15221 24.991 1.2012 1 188500 19283 3613 12170 12177 23043 23043 0.11104370796954299 KTILDPLTL 9 Unmodified _KTILDPLTL_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 507.3157 1012.61685 0.32682 0.0001658 -0.32555 -0.00016516 0.0012638 6.4113E-07 507.315457891785 67.019 0.66107 70.515 70.251 70.913 3.4964 0.0015744 -6.5475E-05 NaN 24.991 65 42 2 NaN NaN NaN NaN 0 NaN NaN 0 201390 19284 3613 12170 12177 0.11104370796954299 KTILEKEK 8 Unmodified _KTILEKEK_ 0 0 0 L1MEd_dup14850|chr11:14654045-14654528:+|1.4563226978086712|0.008148747992525|7.48|151.0|5|1|sense L1MEd_dup14850|chr11:14654045-14654528:+|1.4563226978086712|0.008148747992525|7.48|151.0|5|1|sense L1MEd_dup14850|chr11:14654045-14654528:+|1.4563226978086712|0.008148747992525|7.48|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 494.8054504394531 2 494.8055 987.596446 NaN NaN NaN NaN NaN NaN NaN 33.494 1 37.014 36.514 37.514 3.5201 0 0 0 0.40659 1 5232 5232 1.8442 0 1 19285 13171 12171 12178 23044 23044 0.10215200137133706 KTIQQTLIL 9 Unmodified _KTIQQTLIL_ 0 0 0 ENSG00000107371|ENST00000327304|EXOSC3 ENSG00000107371|ENST00000327304|EXOSC3 ENSG00000107371|ENST00000327304|EXOSC3 MULTI-MSMS UPN48_class_I_Rep_1 5 529.334716796875 2 529.334424 1056.6543 0.34099 0.0001805 -0.15031 -7.9564E-05 0.19069 0.00010094 529.3342369929246 53.372 0.69252 56.891 56.571 57.264 3.5192 114 49 3 0 0 0 0.21414 1 11186 11186 19.362 2.249 1 527660 19286 1818 12172 12179 23045 23045 0.12823462062578983 KTISVVLQL 9 Unmodified _KTISVVLQL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS UPN48_class_I_Rep_1 5 500.8236083984375 2 500.823692 999.632832 0.35527 0.00017793 -0.15073 -7.5489E-05 0.20454 0.00010244 500.8236053103816 61.368 0.65646 64.836 64.503 65.16 3.4678 117 61 2 0 0 0 0.12795 3 13636 13600;13636;13675 28.495 3.5035 1 190640 19287 1108 12173 12180 23046;23047;23048 23047 0.13300077033864 KTISVVLQL 9 Unmodified _KTISVVLQL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS UPN48_class_I_Rep_2 6 500.8235778808594 2 500.823692 999.632832 0.35303 0.00017681 -0.083101 -4.1619E-05 0.26993 0.00013519 500.82355671069473 61.248 0.59082 64.727 64.429 65.02 3.4785 92 50 2 0 0 0 0.12795 3 13567 13567;13606;13643 28.495 6.6588 1 237760 19288 1108 12173 12180 23049;23050;23051 23049 0.13300077033864 KTISVVLQL 9 Unmodified _KTISVVLQL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS UPN48_class_I_Rep_3 7 500.823974609375 2 500.823692 999.632832 0.26044 0.00013044 0.10705 5.3614E-05 0.36749 0.00018405 500.8236506461925 61.215 0.79212 64.728 64.293 65.085 3.5128 114 66 2 0 0 0 0.079935 2 13488 13449;13488 38.615 7.3464 1 191390 19289 1108 12173 12180 23052;23053 23053 0.13300077033864 KTISVVLQL 9 Unmodified _KTISVVLQL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 500.823692 999.632832 0.35527 0.00017793 -0.15073 -7.5489E-05 0.20454 0.00010244 500.8236053103816 61.368 0.65646 64.836 64.503 65.16 3.4678 0.072133 -0.00012311 NaN 38.615 117 61 2 NaN NaN NaN NaN 0 NaN NaN 0 190640 19290 1108 12173 12180 0.13300077033864 KTISVVLQL 9 Unmodified _KTISVVLQL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 500.823692 999.632832 0.35303 0.00017681 -0.083101 -4.1619E-05 0.26993 0.00013519 500.82355671069473 61.248 0.59082 64.727 64.429 65.02 3.4785 -0.036826 -5.5371E-05 NaN 38.615 92 50 2 NaN NaN NaN NaN 0 NaN NaN 0 237760 19291 1108 12173 12180 0.13300077033864 KTISVVLQL 9 Unmodified _KTISVVLQL_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 500.823692 999.632832 0.26044 0.00013044 0.10705 5.3614E-05 0.36749 0.00018405 500.8236506461925 61.215 0.79212 64.728 64.293 65.085 3.5128 -0.035308 0.0001351 NaN 38.615 114 66 2 NaN NaN NaN NaN 0 NaN NaN 0 191390 19292 1108 12173 12180 0.13300077033864 KTIVMGASF 9 Oxidation (M) _KTIVM(Oxidation (M))GASF_ KTIVM(1)GASF KTIVM(40)GASF 0 0 1 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-MSMS UPN48_class_I_Rep_1 5 485.2573547363281 2 485.257328 968.500103 0.16545 8.0287E-05 -0.14661 -7.1143E-05 0.018844 9.1444E-06 485.2572565764546 39.03 0.69369 42.535 42.216 42.91 3.5048 91 61 2 0 0 0 0.073198 1 6854 6854 40.239 8.9709 1 145440 19293 4782 12174 12181 23054 23054 150 0.014593093055623285 KTIVMGASF 9 Oxidation (M) _KTIVM(Oxidation (M))GASF_ KTIVM(1)GASF KTIVM(56)GASF 0 0 1 nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 nc|ENSG00000177156|P37837-2|TALDO1 MULTI-MSMS UPN48_class_I_Rep_2 6 485.2570495605469 2 485.257328 968.500103 0.20574 9.9837E-05 -0.083947 -4.0736E-05 0.12179 5.9101E-05 485.2571807175751 38.747 0.72056 42.477 42.144 42.864 3.7297 117 71 2 0 0 0 0.033731 1 6793 6793 55.503 17.327 1 155730 19294 4782 12174 12181 23055 23055 150 0.014593093055623285 KTIVRYHCTH 10 Unmodified _KTIVRYHCTH_ 0 0 0 L1ME1_dup20145|chr10:103150058-103151181:-|4.599287396355214|0.0706060630167634|6.03|151.0|6|1|sense L1ME1_dup20145|chr10:103150058-103151181:-|4.599287396355214|0.0706060630167634|6.03|151.0|6|1|sense L1ME1_dup20145|chr10:103150058-103151181:-|4.599287396355214|0.0706060630167634|6.03|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 629.3311767578125 2 629.329682 1256.64481 NaN NaN NaN NaN NaN NaN NaN 39.951 1 39.951 39.451 40.451 0 0 0 0 0.53105 1 7720 7720 1.3295 0.25807 1 19295 12287 12175 12182 23056 23056 0.026753705053806698 KTKLCLHRRLF 11 Unmodified _KTKLCLHRRLF_ 0 0 0 ENST00000430799.7_2_1:27107243-27107537:+|nuORF ENST00000430799.7_2_1:27107243-27107537:+|nuORF ENST00000430799.7_2_1:27107243-27107537:+|nuORF MSMS UPN46_class_I_Rep_3 1 472.2872009277344 3 472.286974 1413.83909 NaN NaN NaN NaN NaN NaN NaN 92.61 1 92.61 92.11 93.11 0 0 0 0 0.38417 1 22417 22417 0.094841 0 1 19296 6727 12176 12183 23057 23057 0.14872746661330893 KTKLRITDL 9 Unmodified _KTKLRITDL_ 0 0 0 REV__L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|25|2|sense REV__L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|25|2|sense MSMS UPN48_class_I_Rep_3 7 544.34326171875 2 544.345323 1086.67609 NaN NaN NaN NaN NaN NaN NaN 76.703 1 80.286 79.786 80.786 3.5831 0 0 0 0.39598 1 18075 18075 1.6526 0 1 + 19297 27001 12177 12184 23058 23058 0.13622266811103145 KTKMVQHIR 9 Unmodified _KTKMVQHIR_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MSMS UPN48_class_I_Rep_3 7 570.8377685546875 2 570.837143 1139.65973 NaN NaN NaN NaN NaN NaN NaN 62.803 1 66.312 65.812 66.812 3.5091 0 0 0 0.38784 1 13989 13989 3.5965 0.31518 1 19298 4466 12178 12185 23059 23059 0.09548862373367228 KTKNWQQR 8 Unmodified _KTKNWQQR_ 0 0 0 REV__L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|95|3|sense REV__L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|95|3|sense MSMS UPN48_class_I_Rep_2 6 544.8016967773438 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 17.498 1 21.15 20.65 21.65 3.6518 0 0 0 0.40753 1 1031 1031 0.6015 0 1 + 19299 24276 12179 12186 23060 23060 0.048384856602069704 KTKPPHIHE 9 Unmodified _KTKPPHIHE_ 0 0 0 REV__L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|137|3|sense REV__L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|137|3|sense MSMS UPN48_class_I_Rep_1 5 543.807861328125 2 543.806365 1085.59818 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.54 117.04 118.04 3.6314 0 0 0 0.39598 1 27682 27682 1.6526 0.17072 1 + 19300 30016 12180 12187 23061 23061 0.058802539457246894 KTKQGKTMK 9 Unmodified _KTKQGKTMK_ 0 0 0 L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|46|3|sense L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|46|3|sense L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|46|3|sense MSMS UPN47_class_I_Rep_3 4 525.3088989257812 2 525.310426 1048.6063 NaN NaN NaN NaN NaN NaN NaN 35.871 1 39.126 38.626 39.626 3.2547 0 0 0 0.3967 1 6696 6696 1.4819 0.68827 1 19301 11095 12181 12188 23062 23062 0.08394064870890361 KTKRANAK 8 Unmodified _KTKRANAK_ 0 0 0 REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|98|3|sense REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|98|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.78765869140625 2 458.787976 915.561398 0.20877 9.5779E-05 -0.05858 -2.6876E-05 0.15019 6.8903E-05 458.7878765515035 88.288 0.20053 88.288 88.22 88.421 0 29 19 2 0 0 0 0.82752 1 21198 21198 5.2307 0 1 261350 + 19302 30385 12182 12189 23063 23063 0.10024002119837405 KTKRISAKK 9 Unmodified _KTKRISAKK_ 0 0 0 nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;SYNE1|p.C4094Lfs*5|1|0.19|ENSG00000131018|chr6:152339311-152339312|-/A|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1 nc|ENSG00000131018|Q8NF91-5|SYNE1 nc|ENSG00000131018|Q8NF91-5|SYNE1 MSMS UPN47_class_I_Rep_1 2 530.3543701171875 2 530.353483 1058.69241 NaN NaN NaN NaN NaN NaN NaN 88.838 1 92.495 91.995 92.995 3.6563 0 0 0 0.4007 1 22212 22212 0.52476 0 1 19303 2692 12183 12190 23064 23064 0.16541392767885554 KTKSLRRRRKK 11 Unmodified _KTKSLRRRRKK_ 0 0 0 REV__ENST00000421536.5_1_2:187351098-187359978:+|nuORF REV__ENST00000421536.5_1_2:187351098-187359978:+|nuORF MSMS UPN47_class_I_Rep_2 3 486.7728271484375 3 486.32682 1455.95863 NaN NaN NaN NaN NaN NaN NaN 111.47 1 115 114.5 115.5 3.5226 0 0 0 0.38417 1 27132 27132 0 0 1 + 19304 22243 12184 12191 23065 23065 0.24889076330214266 KTLDSALFY 9 Unmodified _KTLDSALFY_ 0 0 0 ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-SECPEP UPN48_class_I_Rep_1 5 529.281982421875 2 529.281857 1056.54916 0.37176 0.00019676 -0.0066528 -3.5212E-06 0.36511 0.00019324 529.2817717537624 55.214 0.77817 58.722 58.383 59.161 3.5082 113 48 3 0 0 0 0.047208 1 11772 11772 38.176 38.176 1 404900 19305 3927 12185 12192 23066 23066 0.023149208661379816 KTLDSALFY 9 Unmodified _KTLDSALFY_ 0 0 0 ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS UPN48_class_I_Rep_3 7 529.2819213867188 2 529.281857 1056.54916 0.35845 0.00018972 0.13802 7.3049E-05 0.49647 0.00026277 529.2818403189704 55.059 0.83718 58.628 58.367 59.204 3.5694 112 47 3 0 0 0 0.088679 2 11656 11656;11698 36.506 11.107 1 413990 19306 3927 12185 12192 23067;23068 23067 0.023149208661379816 KTLKIFYKQ 9 Unmodified _KTLKIFYKQ_ 0 0 0 REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3 REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3 MSMS UPN47_class_I_Rep_1 2 584.8587036132812 2 584.858067 1167.70158 NaN NaN NaN NaN NaN NaN NaN 83.44 1 86.979 86.479 87.479 3.5386 0 0 0 0.4007 1 20868 20868 0.52476 0 1 + 19307 17638 12186 12193 23069 23069 0.12443741333549951 KTLKTKST 8 Unmodified _KTLKTKST_ 0 0 0 REV__L1MB3_dup16942|chr22:19078674-19079136:-|1.047981950645678|0.0113164242067951|6.53|151.0|12|2|sense REV__L1MB3_dup16942|chr22:19078674-19079136:-|1.047981950645678|0.0113164242067951|6.53|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 453.7848205566406 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 66.863 1 70.224 69.724 70.724 3.3611 0 0 0 0.40659 1 16044 16044 1.8442 0 1 + 19308 25843 12187 12194 23070 23070 0.09802644448632236 KTLNYENYY 9 Unmodified _KTLNYENYY_ 0 0 0 L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|64|2|sense L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|64|2|sense L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|64|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 604.2864379882812 2 604.285128 1206.5557 -0.2838 -0.00017149 0.58049 0.00035078 0.29669 0.00017929 604.2852572533466 23.215 0.681 26.566 26.283 26.964 3.3503 73 53 2 0 0 0 0.47197 3 2887 2882;2887;2921 3.5965 0 1 61994 19309 9304 12188 12195 23071;23072;23073 23072 -0.039311859731242293 KTLPDILTF 9 Unmodified _KTLPDILTF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENST00000543961.1_1_12:25956587-25956887:+|nuORF ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS UPN48_class_I_Rep_1 5 524.3079833984375 2 524.307875 1046.6012 0.33558 0.00017595 -0.66448 -0.00034839 -0.3289 -0.00017245 524.3074956916486 70.342 0.28584 73.802 73.595 73.881 3.4598 34 21 2 0 0 0 0.12795 1 16381 16381 28.495 3.5035 1 128020 19310 3139 12189 12196 23074 23074 0.07976084279880524 KTLPDILTF 9 Unmodified _KTLPDILTF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENST00000543961.1_1_12:25956587-25956887:+|nuORF ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS UPN48_class_I_Rep_1 5 524.3074340820312 2 524.307875 1046.6012 0.33501 0.00017565 -0.2697 -0.0001414 0.065312 3.4244E-05 524.3075884669769 70.555 0.32525 74.015 73.881 74.206 3.4598 57 32 2 0 0 0 0.12795 1 16429 16429 28.495 3.5035 1 175830 19311 3139 12189 12196 23075 23075 0.07976084279880524 KTLPDILTF 9 Unmodified _KTLPDILTF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF;ENST00000543961.1_1_12:25956587-25956887:+|nuORF ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MATCH UPN48_class_I_Rep_3 7 2 524.307875 1046.6012 0.48957 0.00025668 -0.25571 -0.00013407 0.23385 0.00012261 524.8092262063774 70.444 0.22862 73.962 73.849 74.078 3.5185 -0.026375 1.1223E-05 NaN 28.495 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 139530 19312 3139 12189 12196 0.07976084279880524 KTLPVVIK 8 Unmodified _KTLPVVIK_ 0 0 0 REV__nc|ENSG821|P63135|ERVK-7_pol REV__nc|ENSG821|P63135|ERVK-7_pol MULTI-SECPEP UPN47_class_I_Rep_3 4 449.3271179199219 2 449.310221 896.605889 -0.19019 -8.5453E-05 1.5861 0.00071264 1.3959 0.00062719 449.3113278890413 108.21 0.079422 111.75 111.7 111.78 3.5382 8 6 2 0 0 0 0.72333 1 26470 26470 0 0 1 2917600 + 19313 32139 12190 12197 23076 23076 0.1534501321333437 KTLPVVIK 8 Unmodified _KTLPVVIK_ 0 0 0 REV__nc|ENSG821|P63135|ERVK-7_pol REV__nc|ENSG821|P63135|ERVK-7_pol MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 449.310221 896.605889 0.16367 7.3538E-05 3.6852 0.0016558 3.8488 0.0017293 449.3124613705563 108.4 0.086014 112.07 112.05 112.14 3.6751 0.14331 0.0012491 NaN 0 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 595120 + 19314 32139 12190 12197 0.1534501321333437 KTLSAILRI 9 Unmodified _KTLSAILRI_ 0 0 0 ENST00000476007.2_3_3:58293695-58303220:+|nuORF;ENST00000461393.5_1_3:58292349-58303220:+|nuORF;ENSG00000163684|ENST00000295959|RPP14;ENST00000481972.5_1_3:58292052-58303220:+|nuORF;ENST00000477305.5_1_3:58292052-58303220:+|nuORF ENST00000476007.2_3_3:58293695-58303220:+|nuORF ENST00000476007.2_3_3:58293695-58303220:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 508.3022155761719 2 507.837134 1013.65972 0.23154 0.00011758 -0.213 -0.00010817 0.018539 9.4148E-06 507.83700534241774 51.627 0.63772 55.15 54.609 55.246 3.5227 82 48 2 0 0 0 0.10927 1 10664 10664 16.149 3.9084 1 356630 19315 4031 12191 12198 23077 23077 0.153431856450311 KTLSAILRI 9 Unmodified _KTLSAILRI_ 0 0 0 ENST00000476007.2_3_3:58293695-58303220:+|nuORF;ENST00000461393.5_1_3:58292349-58303220:+|nuORF;ENSG00000163684|ENST00000295959|RPP14;ENST00000481972.5_1_3:58292052-58303220:+|nuORF;ENST00000477305.5_1_3:58292052-58303220:+|nuORF ENST00000476007.2_3_3:58293695-58303220:+|nuORF ENST00000476007.2_3_3:58293695-58303220:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 508.3020935058594 2 507.837134 1013.65972 0.31698 0.00016097 -0.28871 -0.00014662 0.028266 1.4355E-05 507.8371054781904 51.533 0.64212 55.201 54.645 55.287 3.6679 59 48 2 0 0 0 0.11642 1 10598 10598 12.241 3.4953 1 234090 19316 4031 12191 12198 23078 23078 0.153431856450311 KTLVKKWN 8 Unmodified _KTLVKKWN_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|173|3|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|173|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 508.2120056152344 2 508.816202 1015.61785 0.27552 0.00014019 -0.40566 -0.00020641 -0.13014 -6.6218E-05 508.8161499534024 39.903 0.093727 39.903 39.864 39.958 0 13 9 2 0 0 0 0.72333 1 7702 7702 2.3027 0 1 56483 + 19317 25365 12192 12199 23079 23079 0.11066629956508223 KTMAWVPA 8 Unmodified _KTMAWVPA_ 0 0 0 nc|ENSG00000092208|O14893-4|GEMIN2;ENST00000525430.1_1_14:39583533-39591807:+|nuORF;nc|ENSG00000092208|O14893-3|GEMIN2;nc|ENSG00000092208|O14893-2|GEMIN2;nc|ENSG00000092208|O14893|GEMIN2 nc|ENSG00000092208|O14893-4|GEMIN2 nc|ENSG00000092208|O14893-4|GEMIN2 MSMS UPN47_class_I_Rep_3 4 452.2685546875 2 452.241481 902.468409 NaN NaN NaN NaN NaN NaN NaN 18.836 1 22.19 21.69 22.69 3.3545 0 0 0 0.40738 1 1645 1645 0.79363 0 1 19318 7255 12193 12200 23080 23080 0.013273613422370545 KTNTLKYTD 9 Unmodified _KTNTLKYTD_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|13|1|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|13|1|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|13|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 542.2876586914062 2 542.287671 1082.56079 -0.10018 -5.4324E-05 0.2559 0.00013877 0.15572 8.4446E-05 542.2876998999913 20.571 0.40727 20.571 20.302 20.71 0 65 40 2 0 0 0 0.1249 1 2195 2195 1.4819 1.4819 1 74683 19319 13906 12194 12201 23081 23081 0.02281117889469897 KTNTLLIQLAP 11 Unmodified _KTNTLLIQLAP_ 0 0 0 REV__ENSG00000110921|ENST00000228510|MVK REV__ENSG00000110921|ENST00000228510|MVK MULTI-MSMS UPN48_class_I_Rep_1 5 404.5834045410156 3 404.583451 1210.72852 -0.12773 -5.1676E-05 -0.33379 -0.00013505 -0.46152 -0.00018672 404.58331027379523 52.015 0.85638 55.537 54.86 55.717 3.5227 121 82 2 0 0 0 0.52578 1 10800 10800 3.5927 0 1 504840 + 19320 18443 12195 12202 23082 23082 0.13158805154102993 KTPGGWRK 8 Unmodified _KTPGGWRK_ 0 0 0 REV__HSMAR2_dup1772|chr21:44101180-44102271:+|1.011264615351425|0.2164920475429817|2.22|151.0|27|3|sense REV__HSMAR2_dup1772|chr21:44101180-44102271:+|1.011264615351425|0.2164920475429817|2.22|151.0|27|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.2703857421875 2 465.269419 928.524284 0.22754 0.00010587 -1.5795 -0.00073491 -1.352 -0.00062905 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.82752 1 25456 25456 2.5775 0.51773 1 4396600 + 19321 23963 12196 12203 23083 23083 0.05716330574091444 KTPIAKQTV 9 Unmodified _KTPIAKQTV_ 0 0 0 LTR13_dup34|chr2:73753751-73754758:+|1.7121580386798292|0.3910562259738624|2.13|151.0|16|2|sense LTR13_dup34|chr2:73753751-73754758:+|1.7121580386798292|0.3910562259738624|2.13|151.0|16|2|sense LTR13_dup34|chr2:73753751-73754758:+|1.7121580386798292|0.3910562259738624|2.13|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.3056335449219 2 493.305667 984.596781 0.25901 0.00012777 -0.050384 -2.4855E-05 0.20862 0.00010291 493.3055823093124 71.907 0.43423 75.196 74.922 75.356 3.2899 42 36 2 0 0 0 0.44742 1 17593 17593 5.2969 0 1 81051 19322 15564 12197 12204 23084 23084 0.10386619856990364 KTPKKKMKM 9 Unmodified _KTPKKKMKM_ 0 0 0 ENST00000491428.1_1_1:218458703-218475928:+|nuORF;ENSG00000067533|ENST00000366932|RRP15 ENST00000491428.1_1_1:218458703-218475928:+|nuORF ENST00000491428.1_1_1:218458703-218475928:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.3400268554688 2 560.340672 1118.66679 0.63482 0.00035571 -0.76986 -0.00043138 -0.13504 -7.5668E-05 560.3402141872834 94.681 0.31493 98.153 98.029 98.344 3.472 62 43 2 0 0 0 0.48846 1 23314 23314 1.8442 0 1 77402 19323 1034 12198 12205 23085 23085 0.11220458929597044 KTPKKKMKM 9 Unmodified _KTPKKKMKM_ 0 0 0 ENST00000491428.1_1_1:218458703-218475928:+|nuORF;ENSG00000067533|ENST00000366932|RRP15 ENST00000491428.1_1_1:218458703-218475928:+|nuORF ENST00000491428.1_1_1:218458703-218475928:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 560.340672 1118.66679 0.43719 0.00024498 -0.77126 -0.00043217 -0.33407 -0.00018719 560.3400455389851 98.239 0.093292 98.239 98.172 98.266 0 0.015338 -6.4188E-05 NaN 1.8442 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 205520 19324 1034 12198 12205 0.11220458929597044 KTPLHLKWG 9 Unmodified _KTPLHLKWG_ 0 0 0 REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|135|3|anti-sense REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_1 5 540.319580078125 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 100.05 1 103.66 103.16 104.16 3.6084 0 0 0 0.38639 1 24163 24163 3.9444 0.3479 1 + 19325 23846 12199 12206 23086 23086 0.09258032330808419 KTPLHLKWG 9 Unmodified _KTPLHLKWG_ 0 0 0 REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|135|3|anti-sense REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_1 5 540.3198852539062 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 100.09 1 103.7 103.2 104.2 3.6084 0 0 0 0.38639 1 24172 24172 3.9444 0.3479 1 + 19326 23846 12199 12206 23087 23087 0.09258032330808419 KTPLPQLFF 9 Unmodified _KTPLPQLFF_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MULTI-SECPEP UPN47_class_I_Rep_1 2 545.3167114257812 2 545.81841 1089.62227 0.47899 0.00026144 -0.10833 -5.9129E-05 0.37066 0.00020231 545.8183477241836 82.342 0.99038 85.854 85.754 86.744 3.5122 147 108 2 0 0 0 0.12281 1 20665 20665 4.3292 0.73274 1 267040 + 19327 32069 12200 12207 23088 23088 0.08104094379427806 KTPPRYII 8 Unmodified _KTPPRYII_ 0 0 0 L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|7|1|sense L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|7|1|sense L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.854736328125 2 494.302927 986.591301 0.27411 0.00013549 -2.738 -0.0013534 -2.4639 -0.0012179 494.301489349625 107.8 0.13288 111.48 111.46 111.59 3.6783 14 12 2 0 0 0 0.82752 1 25499 25499 8.5933 1.8701 1 2751900 19328 13075 12201 12208 23089 23089 0.09746941065179726 KTPPSIDVI 9 Unmodified _KTPPSIDVI_ 0 0 0 REV__L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|50|3|sense REV__L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|50|3|sense MSMS UPN48_class_I_Rep_2 6 485.28582763671875 2 485.2844 968.554247 NaN NaN NaN NaN NaN NaN NaN 37.262 1 40.964 40.464 41.464 3.7021 0 0 0 0.39518 1 6358 6358 1.8442 1.0506 1 + 19329 27650 12202 12209 23090 23090 0.06871224728752168 KTPQKPIQRSV 11 Unmodified _KTPQKPIQRSV_ 0 0 0 L1PA10_dup1526|chr4:15817765-15819003:+|3.1622451354861|0.0325858692191662|6.6|151.0|10|1|sense L1PA10_dup1526|chr4:15817765-15819003:+|3.1622451354861|0.0325858692191662|6.6|151.0|10|1|sense L1PA10_dup1526|chr4:15817765-15819003:+|3.1622451354861|0.0325858692191662|6.6|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 641.3855590820312 2 641.385511 1280.75647 0.63978 0.00041035 -0.95476 -0.00061237 -0.31498 -0.00020202 641.3848970290272 94.147 0.36198 98.038 97.88 98.242 3.8914 86 51 2 0 0 0 0.65821 1 22302 22302 2.4985 1.3051 1 143860 19330 13583 12203 12210 23091 23091 0.1273212813414375 KTPQVGDRVLV 11 Unmodified _KTPQVGDRVLV_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MSMS UPN46_class_I_Rep_3 1 606.3613891601562 2 606.358962 1210.70337 NaN NaN NaN NaN NaN NaN NaN 26.424 1 26.424 25.924 26.924 0 0 0 0 0.38417 1 3776 3776 0.96228 0.43751 1 19331 965 12204 12211 23092 23092 0.10644750351502807 KTPRIKHKKK 10 Unmodified _KTPRIKHKKK_ 0 0 0 L1MA9_dup7783|chr8:47569579-47570781:+|1.2294716652886335|0.0210452990003479|5.87|150.0|40|3|sense L1MA9_dup7783|chr8:47569579-47570781:+|1.2294716652886335|0.0210452990003479|5.87|150.0|40|3|sense L1MA9_dup7783|chr8:47569579-47570781:+|1.2294716652886335|0.0210452990003479|5.87|150.0|40|3|sense MSMS UPN48_class_I_Rep_1 5 632.4025268554688 2 632.422231 1262.82991 NaN NaN NaN NaN NaN NaN NaN 106.85 1 110.48 109.98 110.98 3.6299 0 0 0 0.53105 1 25738 25738 1.4819 0.15237 1 19332 10156 12205 12212 23093 23093 0.20900721367274855 KTPRLLNKTH 10 Unmodified _KTPRLLNKTH_ 0 0 0 REV__ENSG00000134588|ENST00000511190|USP26 REV__ENSG00000134588|ENST00000511190|USP26 MULTI-MSMS UPN47_class_I_Rep_3 4 403.2467956542969 3 403.247173 1206.71969 -0.61137 -0.00024653 -0.1594 -6.4276E-05 -0.77077 -0.00031081 403.24701641923775 96.996 0.46313 100.41 100.36 100.82 3.414 104 63 2 0 0 0 0.56118 1 24043 24043 3.0723 2.0587 1 173380 + 19333 19104 12206 12213 23094 23094 0.12459876308253115 KTPRRTTT 8 Unmodified _KTPRRTTT_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MSMS UPN46_class_I_Rep_3 1 480.8005065917969 2 480.78289 959.551228 NaN NaN NaN NaN NaN NaN NaN 89.431 1 89.431 88.931 89.931 0 0 0 0 0.39996 1 21514 21514 7.9102 2.6795 1 + 19334 20484 12207 12214 23095 23095 0.06983394394592324 KTPTKASTKQ 10 Unmodified _KTPTKASTKQ_ 0 0 0 REV__L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|13|2|sense REV__L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|13|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.31689453125 2 545.316763 1088.61897 0.3819 0.00020826 0.22274 0.00012147 0.60464 0.00032972 545.3167551332748 85.49 0.16217 85.49 85.444 85.606 0 50 19 4 0 0 0 0.53004 1 20406 20406 8.1555 8.1555 1 1816800 + 19335 24514 12208 12215 23096 23096 0.07820799534761136 KTPTKKTNIKH 11 Unmodified _KTPTKKTNIKH_ 0 0 0 L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|32|2|sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|32|2|sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|32|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 648.39306640625 2 648.393336 1294.77212 0.63455 0.00041144 -0.50338 -0.00032639 0.13118 8.5055E-05 648.3930607165731 100.13 0.6233 103.63 103.31 103.93 3.4974 186 87 3 0 0 0 0.65821 1 24518 24518 2.4985 0.65425 1 398050 19336 12476 12209 12216 23097 23097 0.13652414651210165 KTPVIKIV 8 Unmodified _KTPVIKIV_ 0 0 0 REV__L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|18|1|sense REV__L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|18|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 449.32708740234375 2 449.310221 896.605889 0.14805 6.6522E-05 -1.5167 -0.00068147 -1.3687 -0.00061495 449.3105923202476 108.29 0.025742 111.97 111.95 111.98 3.6746 4 2 2 0 0 0 0.72333 1 25670 25670 1.8442 0 1 815940 + 19337 24179 12210 12217 23098 23098 0.1534501321331163 KTQHFRIIVA 10 Unmodified _KTQHFRIIVA_ 0 0 0 MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|119|3|anti-sense MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|119|3|anti-sense MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|119|3|anti-sense MSMS UPN47_class_I_Rep_2 3 606.8631591796875 2 606.864215 1211.71388 NaN NaN NaN NaN NaN NaN NaN 109.61 1 113.14 112.64 113.64 3.5307 0 0 0 0.53105 1 26708 26708 3.2813 0.28607 1 19338 16171 12211 12218 23099 23099 0.11648777796608556 KTQLKLLSFE 10 Unmodified _KTQLKLLSFE_ 0 0 0 REV__nc|ENSG00000249481|Q496A3-2|SPATS1 REV__nc|ENSG00000249481|Q496A3-2|SPATS1 MSMS UPN46_class_I_Rep_3 1 402.9090576171875 3 402.907934 1205.70197 NaN NaN NaN NaN NaN NaN NaN 98.494 1 98.494 97.994 98.994 0 0 0 0 0.53105 1 23978 23978 0.62683 0.17231 1 + 19339 21350 12212 12219 23100 23100 0.10735116262753763 KTRAKAPQ 8 Unmodified _KTRAKAPQ_ 0 0 0 MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.274658203125 2 450.274701 898.534849 0.18588 8.3698E-05 -0.51583 -0.00023227 -0.32995 -0.00014857 450.27448463652513 87.74 0.21415 87.74 87.693 87.907 0 87 24 4 0 0 0 0.82752 1 21084 21084 5.2307 0.47466 1 13255000 19340 16106 12213 12220 23101 23101 0.08152313228504227 KTRAKAPQ 8 Unmodified _KTRAKAPQ_ 0 0 0 MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 450.2746887207031 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 84.788 1 88.149 87.649 88.649 3.3615 0 0 0 0.40404 1 21281 21281 5.2307 2.6532 1 19341 16106 12213 12220 23102 23102 0.08152313228504227 KTRAKAPQ 8 Unmodified _KTRAKAPQ_ 0 0 0 MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 450.274701 898.534849 -0.060916 -2.7429E-05 -0.32343 -0.00014563 -0.38434 -0.00017306 450.2745097272922 84.152 1.1272 87.575 87.109 88.236 3.4223 -0.082785 7.2906E-06 NaN 5.2307 504 151 5 NaN NaN NaN NaN 0 NaN NaN 0 6761200 19342 16106 12213 12220 0.08152313228504227 KTRFHFFI 8 Unmodified _KTRFHFFI_ 0 0 0 L1ME3G_dup4219|chr4:88619360-88620193:+|1.042847766968126|0.0123687584915731|6.4|151.0|31|3|sense L1ME3G_dup4219|chr4:88619360-88620193:+|1.042847766968126|0.0123687584915731|6.4|151.0|31|3|sense L1ME3G_dup4219|chr4:88619360-88620193:+|1.042847766968126|0.0123687584915731|6.4|151.0|31|3|sense MSMS UPN46_class_I_Rep_3 1 548.3085327148438 2 548.308544 1094.60253 NaN NaN NaN NaN NaN NaN NaN 101.97 1 101.97 101.47 102.47 0 0 0 0 0.39996 1 24882 24882 7.9102 0 1 19343 12838 12214 12221 23103 23103 0.05901763159317852 KTRGRAWR 8 Unmodified _KTRGRAWR_ 0 0 0 ENST00000423828.5_1_12:50135594-50135960:+|nuORF ENST00000423828.5_1_12:50135594-50135960:+|nuORF ENST00000423828.5_1_12:50135594-50135960:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 515.803466796875 2 515.804491 1029.59443 -0.2817 -0.0001453 -1.0782 -0.00055614 -1.3599 -0.00070144 515.8039805914104 14.391 0.23596 14.391 14.274 14.51 0 35 27 2 0 0 0 0.82752 1 618 618 2.0598 2.0598 1 23349 19344 6693 12215 12222 23104 23104 0.08081628962531795 KTRKRTQRHDR 11 Unmodified _KTRKRTQRHDR_ 0 0 0 L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|51|2|sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|51|2|sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|51|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 494.6236572265625 3 494.622185 1480.84472 0.19878 9.832E-05 2.4845 0.0012289 2.6833 0.0013272 494.95747775070225 36.976 0.20872 36.976 36.901 37.109 0 25 18 2 0 0 0 0.67356 1 6901 6901 1.1098 0 1 82823 19345 11953 12216 12223 23105 23105 0.12353561497343435 KTRPPSPTF 9 Unmodified _KTRPPSPTF_ 0 0 0 nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS UPN48_class_I_Rep_1 5 515.7890014648438 2 515.787641 1029.56073 NaN NaN NaN NaN NaN NaN NaN 73.651 1 77.133 76.633 77.633 3.4812 0 0 0 0.25702 1 17369 17369 13.042 0.51092 1 19346 3981 12217 12224 23106 23106 0.04713162680127425 KTRVRYYFI 9 Unmodified _KTRVRYYFI_ 0 0 0 L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|34|1|sense L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|34|1|sense L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|34|1|sense MSMS UPN46_class_I_Rep_3 1 623.3607788085938 2 623.358765 1244.70298 NaN NaN NaN NaN NaN NaN NaN 45.032 1 45.032 44.532 45.532 0 0 0 0 0.40038 1 9120 9120 0.6015 0 1 19347 13788 12218 12225 23107 23107 0.09041375422316378 KTSASPFF 8 Unmodified _KTSASPFF_ 0 0 0 ENST00000466019.1_1_X:148577033-148579781:-|nuORF;ENST00000464251.5_1_X:148568821-148584844:-|nuORF;nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS;ENSG00000010404|ENST00000340855|IDS ENST00000466019.1_1_X:148577033-148579781:-|nuORF ENST00000466019.1_1_X:148577033-148579781:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 442.72918701171875 2 442.729261 883.443968 0.15164 6.7134E-05 0.28612 0.00012667 0.43776 0.00019381 442.72918437557956 99.595 1.0834 103.48 102.91 103.99 3.8839 216 153 2 0 0 0 0.82752 1 23685 23685 2.8892 0.31174 1 447810 19348 759 12219 12226 23108 23108 -0.002415755396214081 KTSDKKQA 8 Unmodified _KTSDKKQA_ 0 0 0 Tigger8_dup338|chr6:24806835-24807174:+|1.0872679767419462|0.1851520058164312|2.55|151.0|5|1|sense Tigger8_dup338|chr6:24806835-24807174:+|1.0872679767419462|0.1851520058164312|2.55|151.0|5|1|sense Tigger8_dup338|chr6:24806835-24807174:+|1.0872679767419462|0.1851520058164312|2.55|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 453.256103515625 2 453.256174 904.497795 NaN NaN NaN NaN NaN NaN NaN 24.046 1 27.686 27.186 28.186 3.6397 0 0 0 0.4044 1 2728 2728 4.756 0 1 19349 33459 12220 12227 23109 23109 0.041725968920900414 KTSEQPDSPL 10 Unmodified _KTSEQPDSPL_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MSMS UPN46_class_I_Rep_3 1 551.2742309570312 2 551.274761 1100.53497 NaN NaN NaN NaN NaN NaN NaN 58.697 1 58.697 58.197 59.197 0 0 0 0 0.53105 1 12932 12932 10.151 0.6066 1 + 19350 17948 12221 12228 23110 23110 -0.011277763528141804 KTSFRSMQSK 10 Unmodified _KTSFRSMQSK_ 0 0 0 REV__ENSG00000171481|ENST00000304820|OR1L3 REV__ENSG00000171481|ENST00000304820|OR1L3 MSMS UPN47_class_I_Rep_3 4 600.3129272460938 2 600.313697 1198.61284 NaN NaN NaN NaN NaN NaN NaN 58.467 1 61.633 61.133 62.133 3.1658 0 0 0 0.53105 1 13587 13587 4.1895 0.24511 1 + 19351 20407 12222 12229 23111 23111 0.021479580315826752 KTSFVARYFL 10 Unmodified _KTSFVARYFL_ 0 0 0 L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|9|2|sense L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|9|2|sense L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 616.3455200195312 2 616.345323 1230.67609 NaN NaN NaN NaN NaN NaN NaN 48.671 1 52.389 51.889 52.889 3.7175 0 0 0 0.53105 1 9750 9750 2.7352 0.89096 1 19352 12886 12223 12230 23112 23112 0.0699826681113791 KTSKTVGPQF 10 Unmodified _KTSKTVGPQF_ 0 0 0 L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|165|3|anti-sense L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|165|3|anti-sense L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|165|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.80517578125 2 546.806031 1091.59751 -0.19928 -0.00010897 0.2309 0.00012626 0.031617 1.7288E-05 546.8061010240849 29.854 0.73911 33.178 32.741 33.48 3.3235 92 62 2 0 0 0 0.56155 1 4937 4937 2.7352 0.89096 1 78958 19353 11369 12224 12231 23113 23113 0.05537414506034111 KTSPAVTALA 10 Unmodified _KTSPAVTALA_ 0 0 0 ENSG00000128815|ENST00000325239|WDFY4;ENSG00000128815.19,WDFY4,chr10,+,I37.1,48824170,48826670|28|6.37|4|intron ENSG00000128815|ENST00000325239|WDFY4 ENSG00000128815|ENST00000325239|WDFY4 MULTI-SECPEP UPN47_class_I_Rep_3 4 479.2289733886719 2 479.782025 957.549496 -0.44543 -0.00021371 -0.44345 -0.00021276 -0.88888 -0.00042647 479.78192264782854 36.773 0.47807 40.02 39.858 40.336 3.247 38 34 2 0 0 0 0.84575 1 7005 7005 1.3295 0 1 51409 19354 2602 12225 12232 23114 23114 0.06902340585975253 KTSRGRARWF 10 Unmodified _KTSRGRARWF_ 0 0 0 ENST00000608574.1_2_1:109632787-109633024:-|nuORF ENST00000608574.1_2_1:109632787-109633024:-|nuORF ENST00000608574.1_2_1:109632787-109633024:-|nuORF MSMS UPN48_class_I_Rep_3 7 632.4027709960938 2 632.854712 1263.69487 NaN NaN NaN NaN NaN NaN NaN 71.026 1 74.545 74.045 75.045 3.5185 0 0 0 0.53105 1 16465 16465 2.9952 0.49676 1 19355 7697 12226 12233 23115 23115 0.0735724122555439 KTSRKLFKKT 10 Unmodified _KTSRKLFKKT_ 0 0 0 REV__L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|45|2|sense REV__L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|45|2|sense MSMS UPN48_class_I_Rep_1 5 618.8944091796875 2 618.892972 1235.77139 NaN NaN NaN NaN NaN NaN NaN 102.3 1 105.91 105.41 106.41 3.6164 0 0 0 0.53105 1 24673 24673 1.4819 1.0812 1 + 19356 24945 12227 12234 23116 23116 0.16293620002170428 KTSSWIHY 8 Unmodified _KTSSWIHY_ 0 0 0 L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|282|2|anti-sense L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|282|2|anti-sense L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|282|2|anti-sense MSMS UPN48_class_I_Rep_2 6 511.2583312988281 2 511.258717 1020.50288 NaN NaN NaN NaN NaN NaN NaN 43.688 1 47.45 46.95 47.95 3.7617 0 0 0 0.40404 1 8240 8240 5.2307 0 1 19357 14233 12228 12235 23117 23117 -0.006550992452957871 KTSTKSKSKK 10 Unmodified _KTSTKSKSKK_ 0 0 0 L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|52|3|sense L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|52|3|sense L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|52|3|sense MSMS UPN47_class_I_Rep_1 2 561.845947265625 2 561.845687 1121.67682 NaN NaN NaN NaN NaN NaN NaN 88.189 1 91.845 91.345 92.345 3.6563 0 0 0 0.53105 1 22052 22052 0 0 1 19358 13385 12229 12236 23118 23118 0.12085061460174984 KTTFILQP 8 Unmodified _KTTFILQP_ 0 0 0 Tigger1_dup3831|chr5:10686051-10687900:+|2.719659582302129|0.4209755511881235|2.69|151.0|54|3|sense Tigger1_dup3831|chr5:10686051-10687900:+|2.719659582302129|0.4209755511881235|2.69|151.0|54|3|sense Tigger1_dup3831|chr5:10686051-10687900:+|2.719659582302129|0.4209755511881235|2.69|151.0|54|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2822570800781 2 474.28166 946.548768 0.25156 0.00011931 1.676 0.0007949 1.9276 0.0009142 474.28215654630094 110.2 0.28419 110.2 110.11 110.4 0 91 26 5 0 0 0 0.82752 1 27167 27167 4.756 0 1 6915100 19359 33085 12230 12237 23119 23119 0.07335545936962262 KTTIKAFF 8 Unmodified _KTTIKAFF_ 0 0 0 ENST00000510740.1_1_5:36668711-36725248:-|nuORF ENST00000510740.1_1_5:36668711-36725248:-|nuORF ENST00000510740.1_1_5:36668711-36725248:-|nuORF MSMS UPN47_class_I_Rep_3 4 478.6181335449219 2 478.284203 954.553853 NaN NaN NaN NaN NaN NaN NaN 13.836 1 17.206 16.706 17.706 3.3697 0 0 0 0.40746 1 405 405 0.69038 0 1 19360 7183 12231 12238 23120 23120 0.07475849799561729 KTTLFDVVL 9 Unmodified _KTTLFDVVL_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|42|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|42|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|42|3|sense MSMS UPN48_class_I_Rep_3 7 518.308349609375 2 518.307875 1034.6012 NaN NaN NaN NaN NaN NaN NaN 109.48 1 113.15 112.65 113.65 3.67 0 0 0 0.37692 1 25999 25999 6.2058 0 1 19361 12141 12232 12239 23121 23121 0.08528084279896575 KTTMLYHFT 9 Unmodified _KTTMLYHFT_ 0 0 0 L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|60|2|sense L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|60|2|sense L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|60|2|sense MSMS UPN48_class_I_Rep_2 6 571.290771484375 2 571.289159 1140.56377 NaN NaN NaN NaN NaN NaN NaN 54.987 1 58.543 58.043 59.043 3.5559 0 0 0 0.38639 1 11676 11676 3.9444 0 1 19362 10350 12233 12240 23122 23122 -0.0008933025735586853 KTTNAIPLL 9 Unmodified _KTTNAIPLL_ 0 0 0 L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 485.8004150390625 2 485.800217 969.585882 0.30865 0.00014994 -0.37784 -0.00018356 -0.069198 -3.3617E-05 485.8001911145357 51.871 0.41481 55.204 54.909 55.323 3.3332 29 20 2 0 0 0 0.11884 1 11533 11533 9.3831 0 1 82223 19363 11670 12234 12241 23123 23123 0.09987217482705546 KTTNAIPLL 9 Unmodified _KTTNAIPLL_ 0 0 0 L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 485.800217 969.585882 0.036275 1.7622E-05 -0.054626 -2.6537E-05 -0.018351 -8.9149E-06 485.8001156895276 51.541 0.55235 55.134 54.872 55.424 3.5933 -0.083373 0.00014935 NaN 9.3831 44 27 2 NaN NaN NaN NaN 0 NaN NaN 0 66500 19364 11670 12234 12241 0.09987217482705546 KTTNAIPLL 9 Unmodified _KTTNAIPLL_ 0 0 0 L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense L1MC5_dup14883|chr21:29044775-29045199:-|1.215499680121001|0.4286383588235444|1.5|150.0|17|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 485.800217 969.585882 0.22246 0.00010807 -0.29186 -0.00014179 -0.069405 -3.3717E-05 485.8000590077961 52.108 0.61082 55.314 55.012 55.623 3.2055 0.096509 -8.1144E-05 NaN 9.3831 51 37 2 NaN NaN NaN NaN 0 NaN NaN 0 95056 19365 11670 12234 12241 0.09987217482705546 KTTQEFLL 8 Unmodified _KTTQEFLL_ 0 0 0 REV__L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|21|2|sense REV__L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.2762756347656 2 490.276575 978.538597 0.25105 0.00012308 0.2478 0.00012149 0.49884 0.00024457 490.27639618712925 70.041 0.66467 73.317 73.02 73.685 3.2761 82 58 2 0 0 0 0.82752 1 17052 17052 15.847 1.0089 1 102100 + 19366 28538 12235 12242 23124 23124 0.04846938211710494 KTVLVPVF 8 Unmodified _KTVLVPVF_ 0 0 0 REV__L1MEd_dup18772|chr16:24961991-24962983:+|2.216630512801518|0.0815431876168077|4.76|151.0|25|3|sense REV__L1MEd_dup18772|chr16:24961991-24962983:+|2.216630512801518|0.0815431876168077|4.76|151.0|25|3|sense MSMS UPN47_class_I_Rep_3 4 451.7861633300781 2 451.789121 901.56369 NaN NaN NaN NaN NaN NaN NaN 25.002 1 28.353 27.853 28.853 3.3509 0 0 0 0.40643 1 3444 3444 2.0598 0 1 + 19367 28553 12236 12243 23125 23125 0.10897037804943466 KTVSSLLGIA 10 Unmodified _KTVSSLLGIA_ 0 0 0 L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|74|2|anti-sense;L1MB4_dup3449|chr7:75450364-75451884:+|2.071617301683661|0.2986339002213939|2.79|151.0|74|2|anti-sense L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|74|2|anti-sense L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|74|2|anti-sense MSMS UPN48_class_I_Rep_3 7 494.80560302734375 2 494.8055 987.596446 NaN NaN NaN NaN NaN NaN NaN 33.428 1 37.108 36.608 37.608 3.6797 0 0 0 0.53105 1 5196 5196 1.6526 0 1 19368 10505 12237 12244 23126 23126 0.10215200137133706 KTVVKLAAR 9 Unmodified _KTVVKLAAR_ 0 0 0 REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.330078125 2 493.329476 984.6444 -0.11878 -5.8598E-05 -0.15638 -7.7148E-05 -0.27516 -0.00013575 493.3293635152112 21.525 1.1546 24.949 24.519 25.673 3.4241 188 126 2 0 0 0 0.5015 1 2309 2309 0.45834 0 1 99396 + 19369 21539 12238 12245 23127 23127 0.15146318847826024 KTVYRSPS 8 Unmodified _KTVYRSPS_ 0 0 0 MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|319|2|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|319|2|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|319|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 469.7283630371094 2 469.258717 936.50288 -0.24076 -0.00011298 2.0761 0.00097425 1.8354 0.00086127 469.25892683451934 20.182 0.040762 20.182 20.155 20.195 0 4 2 2 0 0 0 0.72333 1 2046 2046 3.9444 1.3669 1 13602 19370 16057 12239 12246 23128 23128 0.032089007547028814 KTWKYPRRL 9 Unmodified _KTWKYPRRL_ 0 0 0 L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense;L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|1|1|sense L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 624.3805541992188 2 624.372207 1246.72986 0.67645 0.00042235 1.1094 0.00069271 1.7859 0.0011151 624.3725571652952 96.215 0.21083 96.215 96.07 96.281 0 25 22 2 0 0 0 0.50088 1 23381 23381 0.52476 0 1 252400 19371 11237 12240 12247 23129 23129 0.11636484033510897 KTWKYPRRL 9 Unmodified _KTWKYPRRL_ 0 0 0 L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense;L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|1|1|sense L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 624.3721923828125 2 624.372207 1246.72986 0.55349 0.00034558 0.3432 0.00021429 0.89669 0.00055987 624.3722335114923 98.697 0.35995 102.49 102.35 102.71 3.7926 94 52 2 0 0 0 0.48643 1 24455 24455 2.0598 2.0598 1 530530 19372 11237 12240 12247 23130 23130 0.11636484033510897 KTWKYPRRL 9 Unmodified _KTWKYPRRL_ 0 0 0 L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense;L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|1|1|sense L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 624.3723754882812 2 624.372207 1246.72986 0.50555 0.00031565 0.13834 8.6379E-05 0.64389 0.00040203 624.3720145575638 91.728 0.6029 95.129 94.81 95.413 3.401 158 89 2 0 0 0 0.50088 1 22876 22876 0.52476 0 1 2059400 19373 11237 12240 12247 23131 23131 0.11636484033510897 KTYDLLFKL 9 Unmodified _KTYDLLFKL_ 0 0 0 ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10 ENST00000495146.5_1_2:26257477-26350043:+|nuORF ENST00000495146.5_1_2:26257477-26350043:+|nuORF MSMS UPN48_class_I_Rep_1 5 570.8375244140625 2 570.8368 1139.65905 NaN NaN NaN NaN NaN NaN NaN 63.409 1 66.867 66.367 67.367 3.4578 0 0 0 0.39036 1 14273 14273 2.9952 0 1 19374 1258 12241 12248 23132 23132 0.09480346205350543 KTYDLLFKL 9 Unmodified _KTYDLLFKL_ 0 0 0 ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10 ENST00000495146.5_1_2:26257477-26350043:+|nuORF ENST00000495146.5_1_2:26257477-26350043:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 570.836669921875 2 570.8368 1139.65905 0.53058 0.00030288 -0.38184 -0.00021797 0.14874 8.4907E-05 570.8366499172645 63.051 0.42934 66.525 66.278 66.708 3.4738 40 31 2 0 0 0 0.19092 1 14173 14173 21.59 5.441 1 97678 19375 1258 12241 12248 23133 23133 0.09480346205350543 KTYFVQIPH 9 Unmodified _KTYFVQIPH_ 0 0 0 REV__ENST00000575153.5_1_17:5347527-5364435:-|nuORF REV__ENST00000575153.5_1_17:5347527-5364435:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 566.81201171875 2 566.811116 1131.60768 0.3275 0.00018563 0.032243 1.8276E-05 0.35974 0.00020391 566.8111291194925 51.111 0.79977 54.722 54.365 55.164 3.6105 88 54 2 0 0 0 0.36392 2 10445 10349;10445 10.074 0.28607 1 179780 + 19376 17524 12242 12249 23134;23135 23135 0.04714022231291892 KTYGFHESDI 10 Unmodified _KTYGFHESDI_ 0 0 0 REV__Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|48|1|anti-sense REV__Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|48|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 598.7827758789062 2 598.782753 1195.55095 0.46595 0.00027901 0.13058 7.8187E-05 0.59653 0.00035719 598.7828122940109 76.763 0.63963 80.032 79.741 80.38 3.269 120 70 2 0 0 0 0.55148 1 19127 19127 5.2969 0 1 183120 + 19377 32751 12243 12250 23136 23136 -0.03900070115901144 KTYKSTKNQ 9 Unmodified _KTYKSTKNQ_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.3008422851562 2 549.301113 1096.58767 0.53895 0.00029604 -0.14802 -8.1306E-05 0.39093 0.00021474 549.3009138539799 101.01 0.29797 104.81 104.55 104.85 3.7942 75 44 2 0 0 0 0.43982 1 24904 24904 5.7319 5.7319 1 142770 + 19378 30631 12244 12251 23137 23137 0.04324226500671102 KTYKSTKNQ 9 Unmodified _KTYKSTKNQ_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.3008422851562 2 549.301113 1096.58767 0.61725 0.00033906 -0.019532 -1.0729E-05 0.59772 0.00032833 549.3009480819878 100.93 0.49387 104.43 104.17 104.66 3.5063 107 74 2 0 0 0 0.43982 1 24664 24664 5.7319 0.97584 1 143710 + 19379 30631 12244 12251 23138 23138 0.04324226500671102 KTYLKRFK 8 Unmodified _KTYLKRFK_ 0 0 0 nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000165238|Q9Y3S1-3|WNK2;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2 nc|ENSG00000060237|Q9H4A3-5|WNK1 nc|ENSG00000060237|Q9H4A3-5|WNK1 MSMS UPN48_class_I_Rep_3 7 542.3364868164062 2 542.337301 1082.66005 NaN NaN NaN NaN NaN NaN NaN 54.485 1 58.054 57.554 58.554 3.5694 0 0 0 0.40625 1 11459 11459 2.3027 0.4585 1 19380 16627 12245 12252 23139 23139 0.12202605364905139 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 549.2999267578125 2 549.301113 1096.58767 0.61725 0.00033906 -0.019532 -1.0729E-05 0.59772 0.00032833 549.3009480819878 100.93 0.49387 104.43 104.17 104.66 3.5063 107 74 2 0 0 0 0.11642 1 24640 24640 8.1555 4.559 1 143710 19381 1000 12246 12253 23140 23140 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.301025390625 2 549.301113 1096.58767 0.49662 0.00027279 0.0080776 4.437E-06 0.50469 0.00027723 549.3010539352174 100.98 0.47849 104.45 104.04 104.52 3.4671 92 70 2 0 0 0 0.43982 1 24877 24877 5.7319 2.4505 1 138870 19382 1000 12246 12253 23141 23141 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 549.3012084960938 2 549.301113 1096.58767 0.46697 0.00025651 -0.046241 -2.54E-05 0.42073 0.00023111 549.3009823124537 100.67 0.50196 104.28 103.85 104.35 3.6084 127 68 3 0 0 0 0.39745 1 24316 24316 8.1555 1.9497 1 349730 19383 1000 12246 12253 23142 23142 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 549.30126953125 2 549.301113 1096.58767 0.48946 0.00026886 0.03528 1.938E-05 0.52474 0.00028824 549.3010255416352 100.36 0.23665 104.1 103.92 104.15 3.7416 52 33 2 0 0 0 0.12026 1 23834 23834 8.1555 8.1555 1 241320 19384 1000 12246 12253 23143 23143 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 549.30078125 2 549.301113 1096.58767 0.42728 0.00023471 0.19356 0.00010633 0.62084 0.00034103 549.3010393074238 100.06 0.57621 103.91 103.69 104.27 3.8537 168 81 3 0 0 0 0.32682 1 23742 23742 12.241 6.0349 1 308830 19385 1000 12246 12253 23144 23144 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 549.301513671875 2 549.301113 1096.58767 0.42729 0.00023471 -0.07255 -3.9852E-05 0.35474 0.00019486 549.3009530756933 100.62 0.67523 104.48 104.16 104.84 3.8537 193 97 3 0 0 0 0.32682 1 23794 23794 12.241 2.8575 1 444670 19386 1000 12246 12253 23145 23145 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 549.301113 1096.58767 0.61719 0.00033903 -0.21006 -0.00011539 0.40713 0.00022364 549.3009561568156 100.56 0.16875 104.07 104 104.17 3.5062 -0.13447 -0.00016487 NaN 8.1555 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 95158 19387 1000 12246 12253 0.04324226500671102 KTYRQTSTL 9 Unmodified _KTYRQTSTL_ 0 0 0 ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76 ENST00000229405.8_1_6:35260320-35261695:+|nuORF ENST00000229405.8_1_6:35260320-35261695:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 549.301113 1096.58767 0.46697 0.00025651 -0.046241 -2.54E-05 0.42073 0.00023111 549.3009823124537 100.67 0.50196 104.28 103.85 104.35 3.6084 0.081622 1.5099E-05 NaN 8.1555 127 68 3 NaN NaN NaN NaN 0 NaN NaN 0 349730 19388 1000 12246 12253 0.04324226500671102 KTYRQYFE 8 Unmodified _KTYRQYFE_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|29|2|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 567.7816772460938 2 567.782556 1133.55056 NaN NaN NaN NaN NaN NaN NaN 33.599 1 37.259 36.759 37.759 3.6607 0 0 0 0.40625 1 5322 5322 2.3027 0.24298 1 + 19389 28930 12247 12254 23146 23146 -0.01087445045095592 KVAAISVAQRV 11 Unmodified _KVAAISVAQRV_ 0 0 0 nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 MULTI-MSMS UPN47_class_I_Rep_1 2 571.8578491210938 2 571.356222 1140.69789 0.48332 0.00027615 0.16942 9.6798E-05 0.65274 0.00037294 571.3562041951554 107.86 0.10262 111.53 111.48 111.58 3.6724 18 5 4 0 0 0 0.32209 1 26446 26446 13.615 0.5724 1 26130000 19390 1865 12248 12255 23147 23147 0.13317071559663418 KVAAISVAQRV 11 Unmodified _KVAAISVAQRV_ 0 0 0 nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 MULTI-MATCH UPN47_class_I_Rep_2 3 2 571.356222 1140.69789 0.63489 0.00036275 0.064348 3.6766E-05 0.69924 0.00039951 571.3562404228046 107.88 0.20763 111.42 111.36 111.57 3.5345 -0.074048 -0.00028347 NaN 13.615 54 23 3 NaN NaN NaN NaN 0 NaN NaN 0 14469000 19391 1865 12248 12255 0.13317071559663418 KVAAISVAQRV 11 Unmodified _KVAAISVAQRV_ 0 0 0 nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 MULTI-MATCH UPN47_class_I_Rep_3 4 2 571.356222 1140.69789 0.50518 0.00028864 0.63218 0.0003612 1.1374 0.00064984 571.3565310217482 107.86 0.25136 111.4 111.35 111.6 3.5382 -0.090237 0.0003654 NaN 13.615 44 27 3 NaN NaN NaN NaN 0 NaN NaN 0 15708000 19392 1865 12248 12255 0.13317071559663418 KVAAISVAQRV 11 Unmodified _KVAAISVAQRV_ 0 0 0 nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 571.356222 1140.69789 0.39929 0.00022814 0.38109 0.00021774 0.78038 0.00044588 571.3562811126276 107.88 0.39231 111.51 111.42 111.81 3.6313 0.015817 7.8478E-05 NaN 13.615 95 34 4 NaN NaN NaN NaN 0 NaN NaN 0 35396000 19393 1865 12248 12255 0.13317071559663418 KVAAISVAQRV 11 Unmodified _KVAAISVAQRV_ 0 0 0 nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 MULTI-MATCH UPN48_class_I_Rep_2 6 2 571.356222 1140.69789 0.48409 0.00027659 0.37232 0.00021273 0.85641 0.00048931 571.3562930802468 107.81 0.15082 111.49 111.44 111.59 3.6783 -0.003691 6.8453E-05 NaN 13.615 36 14 4 NaN NaN NaN NaN 0 NaN NaN 0 30498000 19394 1865 12248 12255 0.13317071559663418 KVAAISVAQRV 11 Unmodified _KVAAISVAQRV_ 0 0 0 nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 nc|ENSG00000108406|Q8IX18-3|DHX40 MULTI-MATCH UPN48_class_I_Rep_3 7 2 571.356222 1140.69789 0.46572 0.00026609 0.17539 0.00010021 0.64111 0.0003663 571.3562009546674 107.93 0.06015 111.61 111.6 111.66 3.6813 0.11547 -0.00015658 NaN 13.615 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3218000 19395 1865 12248 12255 0.13317071559663418 KVAALPKQE 9 Unmodified _KVAALPKQE_ 0 0 0 nc|ENSG00000081307|Q9GZZ9-2|UBA5;ENSG00000081307|ENST00000356232|UBA5 nc|ENSG00000081307|Q9GZZ9-2|UBA5 nc|ENSG00000081307|Q9GZZ9-2|UBA5 MSMS UPN48_class_I_Rep_3 7 492.297607421875 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 64.345 1 67.853 67.353 68.353 3.5083 0 0 0 0.39598 1 14459 14459 1.6526 0.32309 1 19396 1216 12249 12256 23148 23148 0.08914333339930636 KVADTILFL 9 Unmodified _KVADTILFL_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS UPN47_class_I_Rep_1 2 510.3099365234375 2 510.310418 1018.60628 0.20805 0.00010617 -0.01544 -7.8793E-06 0.19261 9.8293E-05 510.31030976392174 69.713 0.3194 73.081 72.886 73.205 3.3678 46 29 2 0 0 0 0.26468 1 16889 16889 16.149 2.6412 1 105250 19397 4326 12250 12257 23149 23149 0.09772388142516775 KVAFASHST 9 Unmodified _KVAFASHST_ 0 0 0 REV__L1MD2_dup9664|chr18:21012251-21013781:-|3.941726662689081|0.0523180994290245|6.24|151.0|79|2|anti-sense REV__L1MD2_dup9664|chr18:21012251-21013781:-|3.941726662689081|0.0523180994290245|6.24|151.0|79|2|anti-sense MSMS UPN46_class_I_Rep_3 1 474.25213623046875 2 474.250892 946.48723 NaN NaN NaN NaN NaN NaN NaN 95.532 1 95.532 95.032 96.032 0 0 0 0 0.35339 1 23198 23198 7.9102 2.1497 1 + 19398 27460 12251 12258 23150 23150 0.011846142376612079 KVAGFQIN 8 Unmodified _KVAGFQIN_ 0 0 0 L1MDa_dup2963|chr7:139906356-139908345:-|2.482251122661592|0.0898937598954322|4.79|151.0|14|1|sense L1MDa_dup2963|chr7:139906356-139908345:-|2.482251122661592|0.0898937598954322|4.79|151.0|14|1|sense L1MDa_dup2963|chr7:139906356-139908345:-|2.482251122661592|0.0898937598954322|4.79|151.0|14|1|sense MSMS UPN47_class_I_Rep_2 3 438.7694091796875 2 438.750527 875.486502 NaN NaN NaN NaN NaN NaN NaN 115.91 1 119.4 118.9 119.9 3.4965 0 0 0 0.40604 1 28279 28279 2.5775 1.7838 1 19399 12116 12252 12259 23151 23151 0.043778195886034155 KVAIFCVSQF 10 Unmodified _KVAIFCVSQF_ 0 0 0 REV__nc|ENSG00000178460|Q4G0Z9-2|MCMDC2 REV__nc|ENSG00000178460|Q4G0Z9-2|MCMDC2 MULTI-MSMS UPN48_class_I_Rep_2 6 571.30712890625 2 571.307352 1140.60015 0.59857 0.00034197 -0.16926 -9.67E-05 0.42931 0.00024527 571.3073354628618 56.282 0.54803 59.816 59.618 60.166 3.5333 63 45 2 0 0 0 0.54822 1 12166 12166 5.7319 0 1 170380 + 19400 20653 12253 12260 23152 23152 0.03547546639333632 KVAKKKKKKS 10 Unmodified _KVAKKKKKKS_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|28|1|sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|28|1|sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|28|1|sense MSMS UPN47_class_I_Rep_2 3 586.9135131835938 2 586.913707 1171.81286 NaN NaN NaN NaN NaN NaN NaN 77.733 1 81.076 80.576 81.576 3.3428 0 0 0 0.53105 1 19297 19297 0.45834 0.45834 1 19401 13334 12254 12261 23153 23153 0.23382800761510225 KVAKKKRK 8 Unmodified _KVAKKKRK_ 0 0 0 REV__L1MC1_dup9301|chr11:86061361-86062234:+|3.5039246145636|0.20380083044275|4.1|151.0|20|2|sense REV__L1MC1_dup9301|chr11:86061361-86062234:+|3.5039246145636|0.20380083044275|4.1|151.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 492.7551574707031 2 493.353286 984.692019 0.16433 8.1072E-05 0.0002582 1.2738E-07 0.16459 8.12E-05 493.35314828796885 109.57 0.14806 113.2 113.12 113.27 3.6321 28 18 3 0 0 0 0.72333 1 26606 26606 0 0 1 414700 + 19402 26622 12255 12262 23154 23154 0.1990601783869579 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MSMS UPN47_class_I_Rep_1 2 435.3002624511719 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 63.973 1 67.329 66.829 67.829 3.3557 0 0 0 0.40625 1 15173 15173 2.3027 0 1 19403 5211 12256 12263 23155 23155 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN47_class_I_Rep_2 3 435.3001403808594 2 435.300188 868.585822 -0.37824 -0.00016465 0.54804 0.00023856 0.1698 7.3913E-05 435.30036656101925 62.863 0.24568 66.119 66.051 66.297 3.2558 28 13 3 0 0 0 0.82752 1 14881 14881 2.3027 0 1 328550 19404 5211 12256 12263 23156 23156 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN47_class_I_Rep_2 3 435.3000183105469 2 435.300188 868.585822 -0.3871 -0.0001685 0.66389 0.00028899 0.27679 0.00012049 435.30041757718925 63.225 0.53916 66.48 66.415 66.954 3.2558 84 43 3 0 0 0 0.82752 1 15003 15003 2.3027 0 1 570290 19405 5211 12256 12263 23157 23157 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN48_class_I_Rep_1 5 435.30035400390625 2 435.300188 868.585822 0.030578 1.331E-05 0.19285 8.3947E-05 0.22343 9.7257E-05 435.3002266504135 66.269 0.14526 69.721 69.654 69.799 3.4516 17 9 2 0 0 0 0.82752 1 15147 15147 2.3027 0 1 296030 19406 5211 12256 12263 23158 23158 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN48_class_I_Rep_2 6 435.3001403808594 2 435.300188 868.585822 0.14756 6.4235E-05 0.14459 6.2939E-05 0.29215 0.00012717 435.3002369946799 63.242 0.22911 66.716 66.585 66.814 3.4738 47 19 3 0 0 0 0.82752 1 14184 14184 2.3027 0 1 720680 19407 5211 12256 12263 23159 23159 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MSMS UPN48_class_I_Rep_2 6 435.3002624511719 2 435.300188 868.585822 0.14595 6.3533E-05 0.22932 9.9823E-05 0.37527 0.00016336 435.30022339382265 63.462 0.28996 66.936 66.814 67.104 3.4738 54 24 3 0 0 0 0.82752 2 14253 14253;14298 2.3027 0 1 410700 19408 5211 12256 12263 23160;23161 23160 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 435.300188 868.585822 -0.0082252 -3.5804E-06 -0.2565 -0.00011165 -0.26472 -0.00011523 435.3000667669765 66.226 0.38206 69.583 69.446 69.828 3.3576 -0.082383 -0.00028788 NaN 2.3027 31 25 2 NaN NaN NaN NaN 0 NaN NaN 0 71125 19409 5211 12256 12263 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.300188 868.585822 -0.43471 -0.00018923 0.17652 7.6837E-05 -0.2582 -0.00011239 435.3001522220519 66.438 0.1161 69.697 69.641 69.757 3.2588 0.031468 8.9103E-05 NaN 2.3027 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 39874 19410 5211 12256 12263 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.300188 868.585822 -0.40963 -0.00017831 0.23027 0.00010023 -0.17937 -7.8079E-05 435.3000824537242 66.552 0.17805 69.738 69.688 69.866 3.1853 0.072021 0.0001359 NaN 2.3027 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 78802 19411 5211 12256 12263 0.14627262273359065 KVAKPKKA 8 Unmodified _KVAKPKKA_ 0 0 0 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 ENSG00000187837|ENST00000343677|H1-2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.17902 7.7929E-05 -0.049368 -2.149E-05 0.12966 5.6439E-05 435.3001569877377 66.082 0.30798 69.589 69.488 69.796 3.5077 -0.07625 -0.00010755 NaN 2.3027 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 101030 19412 5211 12256 12263 0.14627262273359065 KVAKQLNA 8 Unmodified _KVAKQLNA_ 0 0 0 REV__ENSG00000172345|ENST00000302824|STARD5 REV__ENSG00000172345|ENST00000302824|STARD5 MULTI-MSMS UPN47_class_I_Rep_1 2 436.2713317871094 2 436.271627 870.528701 -0.41901 -0.0001828 0.16627 7.254E-05 -0.25273 -0.00011026 436.2715519643833 29.445 0.72353 33.202 32.888 33.612 3.7578 121 55 3 0 0 0 0.82752 1 4620 4620 2.3027 0 1 166990 + 19413 20444 12257 12264 23162 23162 0.0882579499698295 KVANIILSY 9 Unmodified _KVANIILSY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-SECPEP UPN48_class_I_Rep_2 6 511.2588195800781 2 510.808042 1019.60153 0.44506 0.00022734 -0.086613 -4.4243E-05 0.35845 0.0001831 510.8079100828812 55.229 0.5122 58.785 58.524 59.036 3.5559 30 28 2 0 0 0 0.10629 1 11728 11728 17.113 0 1 70603 19414 1678 12258 12265 23163 23163 0.09251503999757915 KVAYQLNQY 9 Unmodified _KVAYQLNQY_ 0 0 0 REV__L1M3_dup6687|chr22:19344037-19345261:+|1.6180506990199663|0.1523425184574915|3.41|150.0|1|1|sense REV__L1M3_dup6687|chr22:19344037-19345261:+|1.6180506990199663|0.1523425184574915|3.41|150.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 563.7991333007812 2 563.798206 1125.58186 NaN NaN NaN NaN NaN NaN NaN 53.241 1 56.851 56.351 57.351 3.6098 0 0 0 0.38639 1 11139 11139 3.9444 0.66309 1 + 19415 24305 12259 12266 23164 23164 0.024091279889717043 KVAYRKIGTLP 11 Unmodified _KVAYRKIGTLP_ 0 0 0 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 MULTI-MSMS UPN46_class_I_Rep_3 1 623.3867797851562 2 623.387522 1244.76049 0.67207 0.00041896 -0.58464 -0.00036446 0.087426 5.45E-05 623.386704037616 109.74 0.32144 109.74 109.56 109.88 0 44 27 2 0 0 0 0.50573 1 27002 27002 7.609 1.4032 1 1474500 19416 16825 12260 12267 23165 23165 0.14790217627887614 KVAYRKIGTLP 11 Unmodified _KVAYRKIGTLP_ 0 0 0 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 MULTI-MSMS UPN47_class_I_Rep_1 2 623.3878173828125 2 623.387522 1244.76049 0.55222 0.00034425 0.18349 0.00011439 0.73571 0.00045863 623.8893069134913 109.18 0.44611 112.78 112.61 113.05 3.6046 68 45 2 0 0 0 0.50573 1 26987 26987 7.609 0 1 3156400 19417 16825 12260 12267 23166 23166 0.14790217627887614 KVAYRKIGTLP 11 Unmodified _KVAYRKIGTLP_ 0 0 0 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 MULTI-MSMS UPN47_class_I_Rep_2 3 623.3882446289062 2 623.387522 1244.76049 0.63471 0.00039567 0.47173 0.00029407 1.1064 0.00068974 623.3876781048372 108.68 0.83012 112.21 112.11 112.94 3.5333 205 98 4 0 0 0 0.35213 1 26649 26649 11.495 5.7629 1 31049000 19418 16825 12260 12267 23167 23167 0.14790217627887614 KVAYRKIGTLP 11 Unmodified _KVAYRKIGTLP_ 0 0 0 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 MULTI-MSMS UPN47_class_I_Rep_3 4 623.3877563476562 2 623.387522 1244.76049 0.51208 0.00031923 0.49894 0.00031103 1.011 0.00063026 623.3876893850237 108.68 0.46742 112.22 112.09 112.56 3.5382 136 52 3 0 0 0 0.50573 2 26702 26595;26702 7.609 0.88579 1 27713000 19419 16825 12260 12267 23168;23169 23169 0.14790217627887614 KVAYRKIGTLP 11 Unmodified _KVAYRKIGTLP_ 0 0 0 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 nc|ENSG00000215421|Q9C0G0-3|ZNF407 MSMS UPN48_class_I_Rep_2 6 623.388671875 2 623.387522 1244.76049 NaN NaN NaN NaN NaN NaN NaN 109.4 1 113.07 112.57 113.57 3.6715 0 0 0 0.37149 1 26040 26040 7.609 1.8771 1 19420 16825 12260 12267 23170 23170 0.14790217627887614 KVCFHCLF 8 Unmodified _KVCFHCLF_ 0 0 0 HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|118|1|anti-sense HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|118|1|anti-sense HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|118|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 498.7432861328125 2 498.743334 995.472114 0.28536 0.00014232 -0.24017 -0.00011978 0.045189 2.2538E-05 498.7431647138936 86.025 0.59026 89.731 89.394 89.984 3.7058 149 64 3 0 0 0 0.82752 1 20419 20419 0.79363 0 1 382360 19421 7947 12261 12268 23171 23171 -0.02580292155528241 KVCGFILE 8 Unmodified _KVCGFILE_ 0 0 0 LTR12F_dup587|chr19:3153003-3153196:+|1.0450834781552203|0.0480260230115453|4.44|151.0|1|1|sense;LTR12_dup18|chr1:75758507-75759210:+|1.7647558973779771|0.1582782900182549|3.48|151.0|18|2|sense LTR12F_dup587|chr19:3153003-3153196:+|1.0450834781552203|0.0480260230115453|4.44|151.0|1|1|sense LTR12F_dup587|chr19:3153003-3153196:+|1.0450834781552203|0.0480260230115453|4.44|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.750732421875 2 454.749139 907.483725 -0.19725 -8.97E-05 0.46312 0.0002106 0.26587 0.0001209 454.7509641143321 45.628 0.62281 49.328 48.997 49.62 3.6999 54 33 2 0 0 0 0.82752 1 9606 9606 8.5933 0 1 96512 19422 15526 12262 12269 23172 23172 0.026282281394401252 KVCHLCSFIL 10 Unmodified _KVCHLCSFIL_ 0 0 0 REV__THE1A_dup3365|chr13:21431117-21431470:-|1.7366415768101469|0.0120325411841769|7.17|151.0|12|3|sense REV__THE1A_dup3365|chr13:21431117-21431470:-|1.7366415768101469|0.0120325411841769|7.17|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.8092651367188 2 581.809205 1161.60386 0.45517 0.00026482 -0.012593 -7.3268E-06 0.44257 0.00025749 581.8091789705903 68.927 0.56808 72.381 72.055 72.623 3.4548 80 45 2 0 0 0 0.55148 1 15876 15876 5.2969 1.7004 1 287350 + 19423 32201 12263 12270 23173 23173 0.02951893141562323 KVCNNDSSNR 10 Unmodified _KVCNNDSSNR_ 0 0 0 L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|61|3|sense L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|61|3|sense L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|61|3|sense MSMS UPN48_class_I_Rep_1 5 568.7586669921875 2 568.759286 1135.50402 NaN NaN NaN NaN NaN NaN NaN 111.71 1 115.34 114.84 115.84 3.6326 0 0 0 0.53105 1 27101 27101 1.3295 0.5359 1 19424 8971 12264 12271 23174 23174 -0.05831252938696707 KVCSFQKEK 9 Unmodified _KVCSFQKEK_ 0 0 0 HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|21|2|sense HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|21|2|sense HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.7955932617188 2 548.794609 1095.57467 0.34931 0.0001917 -0.17095 -9.3816E-05 0.17836 9.7882E-05 548.7945199723557 41.296 0.76408 44.942 44.491 45.255 3.6458 92 76 2 0 0 0 0.47763 1 7417 7417 2.9952 0 1 119330 19425 7860 12265 12272 23175 23175 0.03070072116929623 KVDEITFG 8 Unmodified _KVDEITFG_ 0 0 0 REV__nc|ENSG00000183346|Q8IVU9|CABCOCO1 REV__nc|ENSG00000183346|Q8IVU9|CABCOCO1 MULTI-MSMS UPN47_class_I_Rep_1 2 454.7402648925781 2 454.739825 907.465098 0.19078 8.6753E-05 3.2057 0.0014578 3.3965 0.0015445 454.7398362258919 100.78 0.17808 104.57 104.5 104.68 3.7942 44 26 2 0 0 0 0.82752 1 24910 24910 2.5775 0 1 47968 + 19426 20783 12266 12273 23176 23176 0.007663897692395949 KVDEKRVQI 9 Unmodified _KVDEKRVQI_ 0 0 0 REV__L1MB7_dup6541|chr5:76464729-76466054:+|3.206102519284113|0.0169483142341775|7.56|151.0|43|3|sense REV__L1MB7_dup6541|chr5:76464729-76466054:+|3.206102519284113|0.0169483142341775|7.56|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.8331909179688 2 557.83258 1113.65061 0.046041 2.5683E-05 -0.019448 -1.0849E-05 0.026593 1.4834E-05 557.8325022948654 33.191 0.4779 36.646 36.477 36.955 3.4547 54 37 2 0 0 0 0.49187 1 5819 5819 1.4819 0 1 56876 + 19427 26295 12267 12274 23177 23177 0.09832792288693781 KVDELYEDY 9 Unmodified _KVDELYEDY_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-SECPEP UPN47_class_I_Rep_3 4 587.2689819335938 2 587.269144 1172.52373 0.43044 0.00025278 -0.10366 -6.0875E-05 0.32678 0.00019191 587.2692253244154 63.855 0.068756 67.029 66.999 67.067 3.1741 6 5 2 0 0 0 0.12281 1 15236 15236 4.3292 0 1 40635 19428 870 12268 12275 23178 23178 -0.05562598446931588 KVDHHTDKY 9 Unmodified _KVDHHTDKY_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN47_class_I_Rep_1 2 571.78271484375 2 571.783087 1141.55162 -0.14656 -8.38E-05 -0.18377 -0.00010507 -0.33033 -0.00018887 571.78280229568 12.738 0.29476 16.188 16.114 16.409 3.45 59 26 3 0 0 0 0.10956 1 137 137 32.037 18.995 1 130680 19429 2469 12269 12276 23179 23179 -0.013492306761918371 KVDHHTDKY 9 Unmodified _KVDHHTDKY_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN47_class_I_Rep_2 3 571.7820434570312 2 571.783087 1141.55162 0.048526 2.7747E-05 -0.42934 -0.00024549 -0.38082 -0.00021774 571.7827387591881 12.766 0.24158 16.154 16.081 16.323 3.388 53 26 3 0 0 0 0.26468 1 140 140 16.149 10.417 1 82944 19430 2469 12269 12276 23180 23180 -0.013492306761918371 KVDHHTDKY 9 Unmodified _KVDHHTDKY_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN47_class_I_Rep_3 4 571.7822875976562 2 571.783087 1141.55162 -0.44093 -0.00025211 0.008482 4.8498E-06 -0.43245 -0.00024727 571.7829001981878 12.726 0.31225 16.1 16.001 16.313 3.3734 79 36 3 0 0 0 0.47763 1 126 126 2.9952 1.151 1 80670 19431 2469 12269 12276 23181 23181 -0.013492306761918371 KVDKEFYYA 9 Unmodified _KVDKEFYYA_ 0 0 0 REV__ENSG00000119888|ENST00000263735|EPCAM REV__ENSG00000119888|ENST00000263735|EPCAM MSMS UPN47_class_I_Rep_1 2 581.7910766601562 2 581.792589 1161.57063 NaN NaN NaN NaN NaN NaN NaN 67.566 1 70.927 70.427 71.427 3.3611 0 0 0 0.39518 1 16255 16255 1.8442 0 1 + 19432 18690 12270 12277 23182 23182 -0.003696941051430258 KVDLIDIYR 9 Unmodified _KVDLIDIYR_ 0 0 0 L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|25|1|sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|25|1|sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.8303833007812 2 567.829506 1133.64446 0.08701 4.9407E-05 0.27222 0.00015458 0.35923 0.00020398 567.8296288432939 44.996 0.97458 48.696 48.284 49.258 3.6999 103 60 2 0 0 0 0.45441 1 9529 9529 4.897 0 1 206830 19433 14936 12271 12278 23183 23183 0.08298274057187882 KVEATEKRK 9 Unmodified _KVEATEKRK_ 0 0 0 REV__ENST00000331835.9_2_1:87379997-87380045:-|nuORF REV__ENST00000331835.9_2_1:87379997-87380045:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 544.824462890625 2 544.824755 1087.63496 0.48461 0.00026403 0.063908 3.4819E-05 0.54851 0.00029884 544.8246378345208 89.62 0.66791 93.367 93.017 93.685 3.7471 125 78 2 0 0 0 0.48846 1 21379 21379 1.8442 0.19162 1 129940 + 19434 21783 12272 12279 23184 23184 0.09464505771666154 KVEDTMCKINQ 11 Unmodified _KVEDTMCKINQ_ 0 0 0 L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 437.310791015625 3 436.881062 1307.62136 -0.15063 -6.5806E-05 -2.5056 -0.0010947 -2.6562 -0.0011605 436.8792525123368 95.365 0.22511 98.841 98.723 98.948 3.4753 48 30 2 0 0 0 22.551 1 23457 23457 0.50596 0.41111 1 63288 19435 10580 12273 12280 23185 23185 -0.020148561141013488 KVEDTMCKINQ 11 Unmodified _KVEDTMCKINQ_ 0 0 0 L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 436.881062 1307.62136 0.15135 6.6123E-05 -2.9399 -0.0012844 -2.7885 -0.0012183 437.21464108869816 98.892 0.23302 98.892 98.712 98.945 0 0.13363 -0.00045858 NaN 0.50596 40 26 2 NaN NaN NaN NaN 0 NaN NaN 0 40363 19436 10580 12273 12280 -0.020148561141013488 KVEDTMCKINQ 11 Unmodified _KVEDTMCKINQ_ 0 0 0 L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 436.881062 1307.62136 -0.048566 -2.1217E-05 -2.5382 -0.0011089 -2.5867 -0.0011301 436.8792948817676 95.207 0.24182 98.824 98.735 98.976 3.6167 0.065013 6.7921E-05 NaN 0.50596 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 47006 19437 10580 12273 12280 -0.020148561141013488 KVEDTMCKINQ 11 Unmodified _KVEDTMCKINQ_ 0 0 0 L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.881062 1307.62136 0.10872 4.75E-05 -2.8494 -0.0012449 -2.7407 -0.0011974 436.87916982619083 94.862 0.21298 98.638 98.498 98.711 3.7761 -0.12075 -0.00034 NaN 0.50596 38 28 2 NaN NaN NaN NaN 0 NaN NaN 0 70980 19438 10580 12273 12280 -0.020148561141013488 KVEDTMCKINQ 11 Unmodified _KVEDTMCKINQ_ 0 0 0 L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense L1MB4_dup754|chr2:62015086-62015824:-|1.0082258839352627|0.0058480937089435|7.43|151.0|18|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.881062 1307.62136 0.14278 6.2379E-05 -2.1491 -0.0009389 -2.0063 -0.00087652 437.2149462424547 94.697 0.26395 98.599 98.504 98.768 3.9016 -0.15997 0.00057787 NaN 0.50596 54 34 2 NaN NaN NaN NaN 0 NaN NaN 0 116820 19439 10580 12273 12280 -0.020148561141013488 KVEERTPYI 9 Unmodified _KVEERTPYI_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 MULTI-MSMS UPN47_class_I_Rep_3 4 567.8121337890625 2 567.811313 1133.60807 0.4233 0.00024036 0.069787 3.9626E-05 0.49309 0.00027998 567.811396401923 63.599 0.41602 66.773 66.525 66.941 3.1741 50 34 2 0 0 0 0.43153 1 15188 15188 6.2058 0.9089 1 141320 19440 727 12274 12281 23186 23186 0.04661397160452907 KVEERTPYI 9 Unmodified _KVEERTPYI_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 MSMS UPN47_class_I_Rep_3 4 567.8116455078125 2 567.811313 1133.60807 NaN NaN NaN NaN NaN NaN NaN 63.972 1 67.146 66.646 67.646 3.1741 0 0 0 0.37692 1 15267 15267 6.2058 0 1 19441 727 12274 12281 23187 23187 0.04661397160452907 KVELSKELRR 10 Unmodified _KVELSKELRR_ 0 0 0 nc|ENSG00000279484|Q8NEE0|KLHL30-AS1 nc|ENSG00000279484|Q8NEE0|KLHL30-AS1 nc|ENSG00000279484|Q8NEE0|KLHL30-AS1 MSMS UPN46_class_I_Rep_3 1 629.3831787109375 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 12.628 1 12.628 12.128 13.128 0 0 0 0 0.53105 1 161 161 1.3295 0 1 19442 16848 12275 12282 23188 23188 0.13836128134153114 KVETITIIY 9 Unmodified _KVETITIIY_ 0 0 0 ENSG00000100003.18,SEC14L2,chr22,+,I10.1,30409487,30410595|37|5.1|2|intron;ENST00000464335.5_1_22:30795691-30811950:+|nuORF;nc|ENSG00000100003|O76054-5|SEC14L2;nc|ENSG00000100003|O76054-4|SEC14L2;ENSG00000100003|ENST00000615189|SEC14L2 ENSG00000100003.18,SEC14L2,chr22,+,I10.1,30409487,30410595|37|5.1|2|intron ENSG00000100003.18,SEC14L2,chr22,+,I10.1,30409487,30410595|37|5.1|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.320983 1078.62741 0.1511 8.1642E-05 1.4507 0.00078385 1.6018 0.00086549 540.321674337705 32.17 0.092659 32.17 32.126 32.219 0 15 6 3 0 0 0 0.46434 1 5468 5468 4.3292 0 1 214920 19443 1462 12276 12283 23189 23189 0.09124353451397837 KVEVEGWF 8 Unmodified _KVEVEGWF_ 0 0 0 ENST00000577779.1_1_18:9594966-9614482:-|nuORF;ENST00000580283.1_1_18:9594966-9614260:-|nuORF ENST00000577779.1_1_18:9594966-9614482:-|nuORF ENST00000577779.1_1_18:9594966-9614482:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.255126953125 2 497.255643 992.496732 -0.34125 -0.00016969 -1.941 -0.00096519 -2.2823 -0.0011349 497.2553068584726 13.681 0.33063 17.138 17.015 17.345 3.457 65 40 3 0 0 0 0.82752 1 387 387 2.3027 0.4585 1 43516 19444 7536 12277 12284 23190 23190 0.00018382523194304667 KVEVEGWF 8 Unmodified _KVEVEGWF_ 0 0 0 ENST00000577779.1_1_18:9594966-9614482:-|nuORF;ENST00000580283.1_1_18:9594966-9614260:-|nuORF ENST00000577779.1_1_18:9594966-9614482:-|nuORF ENST00000577779.1_1_18:9594966-9614482:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 497.75604248046875 2 497.255643 992.496732 -0.15271 -7.5935E-05 -2.5938 -0.0012898 -2.7465 -0.0013657 497.25524676054306 13.788 0.25106 17.175 17.04 17.291 3.3871 61 29 3 0 0 0 0.82752 1 408 408 2.3027 0.4585 1 34529 19445 7536 12277 12284 23191 23191 0.00018382523194304667 KVEVLHIFH 9 Unmodified _KVEVLHIFH_ 0 0 0 L1M5_dup25655|chr8:19840091-19840705:+|1.0827469776191532|0.3179244347095894|1.77|151.0|34|2|anti-sense L1M5_dup25655|chr8:19840091-19840705:+|1.0827469776191532|0.3179244347095894|1.77|151.0|34|2|anti-sense L1M5_dup25655|chr8:19840091-19840705:+|1.0827469776191532|0.3179244347095894|1.77|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.3251342773438 2 561.326934 1120.63931 0.34262 0.00019232 -0.40761 -0.0002288 -0.064993 -3.6483E-05 561.3266495278673 44.809 0.82732 48.446 48.099 48.927 3.6372 93 55 2 0 0 0 0.48643 1 8646 8646 2.0598 0.21551 1 152750 19446 9130 12278 12285 23192 23192 0.08382014985227215 KVFGNEIKL 9 Unmodified _KVFGNEIKL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN47_class_I_Rep_1 2 524.31298828125 2 524.313492 1046.61243 -0.007129 -3.7378E-06 -0.53135 -0.0002786 -0.53848 -0.00028233 524.313128621378 43.747 0.85229 47.442 47.098 47.95 3.6951 87 50 2 0 0 0 0.16799 4 9017 9017;9060;9066;9109 23.79 5.66 1 107310 19447 2105 12279 12286 23193;23194;23195;23196 23193 0.09098906374038052 KVFGNEIKL 9 Unmodified _KVFGNEIKL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN47_class_I_Rep_2 3 524.3128051757812 2 524.313492 1046.61243 -0.21211 -0.00011121 -0.40426 -0.00021196 -0.61637 -0.00032317 524.3131019805975 44.268 0.74462 47.623 47.196 47.94 3.3556 66 45 2 0 0 0 0.22932 5 9182 9138;9182;9215;9261;9267 18.373 2.7493 1 112510 19448 2105 12279 12286 23197;23198;23199;23200;23201 23198 0.09098906374038052 KVFGNEIKL 9 Unmodified _KVFGNEIKL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN47_class_I_Rep_3 4 524.3135375976562 2 524.313492 1046.61243 0.087453 4.5853E-05 -0.64469 -0.00033802 -0.55724 -0.00029217 524.3129907314302 44.41 0.5816 47.654 47.367 47.949 3.2441 56 32 2 0 0 0 0.33908 2 9254 9254;9358 11.495 2.7493 1 96323 19449 2105 12279 12286 23202;23203 23202 0.09098906374038052 KVFGNEIKL 9 Unmodified _KVFGNEIKL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MATCH UPN46_class_I_Rep_3 1 2 524.313492 1046.61243 0.28837 0.0001512 -1.8463 -0.00096805 -1.558 -0.00081685 524.3116208610284 47.669 0.057873 47.669 47.636 47.694 0 0.071732 -0.0013629 NaN 23.79 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 93735 19450 2105 12279 12286 0.09098906374038052 KVFHCSIVL 9 Unmodified _KVFHCSIVL_ 0 0 0 L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|27|3|sense L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|27|3|sense L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|27|3|sense MSMS UPN47_class_I_Rep_1 2 523.289306640625 2 523.296788 1044.57902 NaN NaN NaN NaN NaN NaN NaN 67.251 1 70.612 70.112 71.112 3.3611 0 0 0 0.36505 1 16161 16161 7.2892 0.56607 1 19451 12882 12280 12287 23204 23204 0.05851581330489353 KVFKKVFRR 9 Unmodified _KVFKKVFRR_ 0 0 0 REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D MSMS UPN47_class_I_Rep_2 3 604.391357421875 2 604.392942 1206.77133 NaN NaN NaN NaN NaN NaN NaN 106.25 1 109.79 109.29 110.29 3.5345 0 0 0 0.4007 1 25743 25743 0.52476 0.066424 1 + 19452 19942 12281 12288 23205 23205 0.17621664792818592 KVFKLHAK 8 Unmodified _KVFKLHAK_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 72.248 1 75.545 75.045 76.045 3.2971 0 0 0 0.40746 1 17701 17701 0.69038 0.088878 1 19453 1726 12282 12289 23206 23206 0.12634951164693575 KVFNGLVHIP 10 Unmodified _KVFNGLVHIP_ 0 0 0 REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|175|3|anti-sense REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|175|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.24006 0.00013499 -0.18281 -0.0001028 0.057251 3.2194E-05 562.3346151957898 32.539 0.026432 32.539 32.526 32.552 0 6 2 3 0 0 0 0.56309 1 5584 5584 1.6526 0.17072 1 103460 + 19454 25148 12283 12290 23207 23207 0.09854301502264207 KVFQLDTA 8 Unmodified _KVFQLDTA_ 0 0 0 REV__Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|75|2|anti-sense REV__Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|75|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 460.78253173828125 2 461.255643 920.496732 0.046073 2.1252E-05 -1.0837 -0.00049988 -1.0377 -0.00047863 461.2547538371906 109.28 0.13298 112.91 112.88 113.01 3.6321 25 16 2 0 0 0 0.72333 1 26555 26555 2.3027 0 1 601290 + 19455 32553 12284 12291 23208 23208 0.03330382523165554 KVFQLDTA 8 Unmodified _KVFQLDTA_ 0 0 0 REV__Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|75|2|anti-sense REV__Tigger1_dup895|chr1:230116528-230117920:-|1.562913060650608|0.0359818327981149|5.44|151.0|75|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 461.255643 920.496732 -0.059201 -2.7307E-05 -1.1378 -0.00052481 -1.197 -0.00055212 461.2548372302697 109.32 0.10458 112.85 112.8 112.9 3.5347 -0.028572 -2.4501E-05 NaN 2.3027 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 755040 + 19456 32553 12284 12291 0.03330382523165554 KVFRPRTKSK 10 Unmodified _KVFRPRTKSK_ 0 0 0 REV__nc|ENSG00000103342|P15170|GSPT1 REV__nc|ENSG00000103342|P15170|GSPT1 MSMS UPN48_class_I_Rep_2 6 623.890869140625 2 623.890764 1245.76697 NaN NaN NaN NaN NaN NaN NaN 109.38 1 113.06 112.56 113.56 3.6715 0 0 0 0.53105 1 26037 26037 6.2058 0.9089 1 + 19457 18226 12285 12292 23209 23209 0.15392155579252176 KVFSATLGL 9 Unmodified _KVFSATLGL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS UPN48_class_I_Rep_1 5 468.28118896484375 2 468.28166 934.548768 NaN NaN NaN NaN NaN NaN NaN 56.477 1 59.979 59.479 60.479 3.5014 0 0 0 0.075414 1 12156 12156 29.841 10.584 1 19458 3325 12286 12293 23210 23210 0.07887545936932838 KVFSATLGL 9 Unmodified _KVFSATLGL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS UPN48_class_I_Rep_1 5 468.2817687988281 2 468.28166 934.548768 NaN NaN NaN NaN NaN NaN NaN 56.623 1 60.125 59.625 60.625 3.5014 0 0 0 0.036539 1 12200 12200 41.956 16.556 1 19459 3325 12286 12293 23211 23211 0.07887545936932838 KVFSATLGL 9 Unmodified _KVFSATLGL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS UPN48_class_I_Rep_2 6 468.2812805175781 2 468.28166 934.548768 NaN NaN NaN NaN NaN NaN NaN 56.438 1 59.971 59.471 60.471 3.5333 0 0 0 0.075414 1 12120 12120 29.841 10.584 1 19460 3325 12286 12293 23212 23212 0.07887545936932838 KVFSATLGL 9 Unmodified _KVFSATLGL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS UPN48_class_I_Rep_2 6 468.2818298339844 2 468.28166 934.548768 NaN NaN NaN NaN NaN NaN NaN 56.565 1 60.098 59.598 60.598 3.5333 0 0 0 0.075414 1 12158 12158 29.841 10.584 1 19461 3325 12286 12293 23213 23213 0.07887545936932838 KVFSATLGL 9 Unmodified _KVFSATLGL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS UPN48_class_I_Rep_2 6 468.2816467285156 2 468.28166 934.548768 NaN NaN NaN NaN NaN NaN NaN 56.703 1 60.237 59.737 60.737 3.5333 0 0 0 0.075414 1 12199 12199 29.841 10.584 1 19462 3325 12286 12293 23214 23214 0.07887545936932838 KVFSATLGL 9 Unmodified _KVFSATLGL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS UPN48_class_I_Rep_3 7 468.2814025878906 2 468.28166 934.548768 0.10335 4.8395E-05 -0.28452 -0.00013323 -0.18117 -8.4839E-05 468.28149180655106 56.513 0.54847 60.055 59.752 60.301 3.5427 72 50 2 0 0 0 0.088679 3 12029 12029;12074;12113 36.506 14.588 1 180790 19463 3325 12286 12293 23215;23216;23217 23215 0.07887545936932838 KVFSFSTLHMS 11 Unmodified _KVFSFSTLHMS_ 0 0 0 L1MB4_dup7698|chr17:30977869-30978605:-|1.179279766238797|0.1251174659960881|3.24|151.0|41|2|anti-sense;L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|158|1|anti-sense L1MB4_dup7698|chr17:30977869-30978605:-|1.179279766238797|0.1251174659960881|3.24|151.0|41|2|anti-sense L1MB4_dup7698|chr17:30977869-30978605:-|1.179279766238797|0.1251174659960881|3.24|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 642.30859375 2 642.326273 1282.63799 NaN NaN NaN NaN NaN NaN NaN 87.846 1 91.574 91.074 92.074 3.7279 0 0 0 0.22906 1 20904 20904 16.149 6.0752 1 19464 9637 12287 12294 23218 23218 0.007980128341614545 KVGGFLRPGIP 11 Unmodified _KVGGFLRPGIP_ 0 0 0 AluJr_dup64642|chr15:68137881-68138166:+|1.0446080911846505|0.0312132746013916|5.06|151.0|5|2|sense AluJr_dup64642|chr15:68137881-68138166:+|1.0446080911846505|0.0312132746013916|5.06|151.0|5|2|sense AluJr_dup64642|chr15:68137881-68138166:+|1.0446080911846505|0.0312132746013916|5.06|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 570.8475341796875 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 28.037 1 28.037 27.537 28.537 0 0 0 0 0.38417 1 4248 4248 1.3295 0.63916 1 19465 169 12288 12295 23219 23219 0.11725990393620123 KVGKVRTS 8 Unmodified _KVGKVRTS_ 0 0 0 nc|ENSG00000101365|O43837-2|IDH3B nc|ENSG00000101365|O43837-2|IDH3B nc|ENSG00000101365|O43837-2|IDH3B MSMS UPN48_class_I_Rep_2 6 437.7783508300781 2 437.777077 873.5396 NaN NaN NaN NaN NaN NaN NaN 63.423 1 66.897 66.397 67.397 3.4738 0 0 0 0.40604 1 14258 14258 2.5775 0 1 19466 16650 12289 12296 23220 23220 0.0977719737127245 KVGKYNKL 8 Unmodified _KVGKYNKL_ 0 0 0 L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|66|3|sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|66|3|sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|66|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 475.2781066894531 2 475.295102 948.575651 0.1149 5.4611E-05 -0.13643 -6.4846E-05 -0.021534 -1.0235E-05 475.2949731094437 42.13 0.65478 45.638 45.291 45.946 3.5079 107 65 2 0 0 0 0.82752 1 7656 7656 2.3027 0 1 210520 19467 12102 12290 12297 23221 23221 0.09930654548122675 KVGLIKYY 8 Unmodified _KVGLIKYY_ 0 0 0 REV__ENSG00000102580|ENST00000602402|DNAJC3 REV__ENSG00000102580|ENST00000602402|DNAJC3 MSMS UPN47_class_I_Rep_2 3 492.3006591796875 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 47.14 1 50.492 49.992 50.992 3.3515 0 0 0 0.40604 1 10094 10094 2.5775 0 1 + 19468 18197 12291 12298 23222 23222 0.09316422833649085 KVGRSVALPK 10 Unmodified _KVGRSVALPK_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|175|3|anti-sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|175|3|anti-sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|175|3|anti-sense MSMS UPN47_class_I_Rep_2 3 527.8381958007812 2 527.840208 1053.66586 NaN NaN NaN NaN NaN NaN NaN 91.977 1 95.442 94.942 95.942 3.4652 0 0 0 0.53105 1 22749 22749 1.4819 0.68827 1 19469 8407 12292 12299 23223 23223 0.14117703876559062 KVGSGALGRV 10 Unmodified _KVGSGALGRV_ 0 0 0 REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|64|2|anti-sense REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|64|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 471.795654296875 2 472.287808 942.561064 0.18851 8.903E-05 0.031271 1.4769E-05 0.21978 0.0001038 472.2877752851132 87.542 0.23984 91.179 91.053 91.293 3.6371 42 28 2 0 0 0 0.84575 1 21866 21866 1.4819 1.4819 1 71316 + 19470 30801 12293 12300 23224 23224 0.0874858239999412 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 476.3266296386719 2 476.326737 950.63892 0.25658 0.00012221 0.044912 2.1393E-05 0.30149 0.00014361 476.3266760561852 108.97 0.52383 108.97 108.88 109.4 0 65 34 2 0 0 0 0.82752 2 26703 26703;26758 2.5775 0 1 5578600 19471 4240 12294 12301 23225;23226 23225 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 476.3268127441406 2 476.326737 950.63892 0.23757 0.00011316 0.023877 1.1373E-05 0.26144 0.00012453 476.3265812231735 108.31 0.89658 111.95 111.68 112.58 3.6355 199 89 4 0 0 0 0.82752 2 26726 26726;26790 2.5775 0 1 13800000 19472 4240 12294 12301 23227;23228 23227 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 476.3270568847656 2 476.326737 950.63892 0.23717 0.00011297 0.56291 0.00026813 0.80008 0.0003811 476.32707516405486 108.97 0.041298 112.58 112.55 112.59 3.6046 6 3 2 0 0 0 0.82752 1 26846 26846 2.5775 0 1 659920 19473 4240 12294 12301 23229 23229 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 476.8427429199219 2 476.326737 950.63892 0.3222 0.00015347 0.21883 0.00010424 0.54103 0.00025771 476.3267527441179 109.32 0.12943 112.86 112.79 112.92 3.5307 21 14 2 0 0 0 0.82752 1 26635 26635 2.5775 0 1 1321600 19474 4240 12294 12301 23230 23230 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_2 3 476.3281555175781 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 109.42 1 112.95 112.45 113.45 3.5307 0 0 0 0.40604 1 26659 26659 2.5775 0 1 19475 4240 12294 12301 23231 23231 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_2 3 476.3277587890625 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 109.55 1 113.08 112.58 113.58 3.5307 0 0 0 0.40604 1 26694 26694 2.5775 0 1 19476 4240 12294 12301 23232 23232 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_2 3 476.32745361328125 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 109.67 1 113.2 112.7 113.7 3.5307 0 0 0 0.40604 1 26724 26724 2.5775 0 1 19477 4240 12294 12301 23233 23233 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.3266296386719 2 476.326737 950.63892 0.1045 4.9775E-05 0.06707 3.1947E-05 0.17157 8.1722E-05 476.32663934703965 108.35 0.78142 111.89 111.86 112.64 3.5382 153 86 2 0 0 0 0.82752 4 26638 26638;26663;26698;26746 2.5775 0 1 21918000 19478 4240 12294 12301 23234;23235;23236;23237 23234 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_3 4 476.3280334472656 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 107.89 1 111.43 110.93 111.93 3.5382 0 0 0 0.40604 1 26359 26359 2.5775 0 1 19479 4240 12294 12301 23238 23238 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_3 4 476.32666015625 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 107.97 1 111.51 111.01 112.01 3.5382 0 0 0 0.40604 1 26384 26384 2.5775 0 1 19480 4240 12294 12301 23239 23239 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_3 4 476.3283386230469 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 108.03 1 111.57 111.07 112.07 3.5382 0 0 0 0.40604 1 26403 26403 2.5775 0 1 19481 4240 12294 12301 23240 23240 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN47_class_I_Rep_3 4 476.3276062011719 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 109.38 1 112.91 112.41 113.41 3.5347 0 0 0 0.40604 1 26871 26871 2.5775 0 1 19482 4240 12294 12301 23241 23241 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 476.3273010253906 2 476.326737 950.63892 0.10158 4.8383E-05 0.64252 0.00030605 0.7441 0.00035443 476.326928004595 108.26 0.49944 111.89 111.62 112.12 3.6313 67 42 3 0 0 0 0.82752 1 26115 26115 2.5775 0 1 8517600 19483 4240 12294 12301 23242 23242 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN48_class_I_Rep_1 5 476.3271179199219 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 108.75 1 112.38 111.88 112.88 3.6321 0 0 0 0.40604 1 26341 26341 2.5775 0 1 19484 4240 12294 12301 23243 23243 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN48_class_I_Rep_1 5 476.325927734375 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 108.92 1 112.55 112.05 113.05 3.6321 0 0 0 0.40604 1 26406 26406 2.5775 0 1 19485 4240 12294 12301 23244 23244 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 476.3265075683594 2 476.326737 950.63892 0.22427 0.00010682 0.28357 0.00013507 0.50784 0.0002419 476.326795196859 108.76 0.56232 112.44 112.29 112.85 3.6746 111 62 3 0 0 0 0.82752 3 25792 25792;25843;25891 2.5775 0 1 9086600 19486 4240 12294 12301 23245;23246;23247 23245 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 476.3280029296875 2 476.326737 950.63892 0.22376 0.00010658 0.62912 0.00029967 0.85287 0.00040625 476.32705161700227 109.54 0.83134 113.21 113.01 113.84 3.6715 179 110 2 0 0 0 0.82752 1 26059 26059 2.5775 0 1 1162500 19487 4240 12294 12301 23248 23248 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 476.32745361328125 2 476.326737 950.63892 0.21446 0.00010215 0.59888 0.00028526 0.81334 0.00038741 476.327029121658 107.92 0.3963 111.6 111.26 111.66 3.6813 60 45 2 0 0 0 0.82752 2 25416 25416;25480 2.5775 0 1 5819000 19488 4240 12294 12301 23249;23250 23249 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MSMS UPN48_class_I_Rep_3 7 476.326904296875 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 108.87 1 112.55 112.05 113.05 3.6751 0 0 0 0.40604 1 25818 25818 2.5775 0 1 19489 4240 12294 12301 23251 23251 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 476.326737 950.63892 0.10151 4.8352E-05 -0.25498 -0.00012146 -0.15347 -7.3103E-05 476.32654663821177 109.06 0.031113 112.69 112.67 112.7 3.6321 0.048597 -0.00048569 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 673230 19490 4240 12294 12301 0.161626400560408 KVHAKKLK 8 Unmodified _KVHAKKLK_ 0 0 0 ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 ENST00000488347.5_1_X:101149758-101186981:-|nuORF ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 476.326737 950.63892 0.21453 0.00010219 -0.35017 -0.0001668 -0.13564 -6.4611E-05 476.3264640105163 108.55 0.33939 112.23 112.17 112.51 3.6751 0.26743 -0.00045684 NaN 2.5775 61 39 2 NaN NaN NaN NaN 0 NaN NaN 0 28923000 19491 4240 12294 12301 0.161626400560408 KVHKARPV 8 Unmodified _KVHKARPV_ 0 0 0 REV__ENSG00000239789|ENST00000285298|MRPS17 REV__ENSG00000239789|ENST00000285298|MRPS17 MULTI-SECPEP UPN47_class_I_Rep_2 3 467.8015441894531 2 467.800886 933.587219 0.13041 6.1007E-05 0.61037 0.00028553 0.74078 0.00034654 467.8010988066082 84.061 0.2691 87.472 87.367 87.636 3.4116 49 33 2 0 0 0 0.72333 1 20993 20993 2.5775 0 1 827120 + 19492 21325 12295 12302 23252 23252 0.11776896362130174 KVHKARPVPLA 11 Unmodified _KVHKARPVPLA_ 0 0 0 REV__ENSG00000239789|ENST00000285298|MRPS17 REV__ENSG00000239789|ENST00000285298|MRPS17 MSMS UPN47_class_I_Rep_1 2 608.405517578125 2 608.387857 1214.76116 NaN NaN NaN NaN NaN NaN NaN 108.1 1 111.73 111.23 112.23 3.6355 0 0 0 0.34415 1 26523 26523 9.3831 0.63772 1 + 19493 21325 12296 12303 23253 23253 0.16237057067610294 KVHKARPVPLA 11 Unmodified _KVHKARPVPLA_ 0 0 0 REV__ENSG00000239789|ENST00000285298|MRPS17 REV__ENSG00000239789|ENST00000285298|MRPS17 MSMS UPN48_class_I_Rep_2 6 608.405517578125 2 608.387857 1214.76116 NaN NaN NaN NaN NaN NaN NaN 107.94 1 111.62 111.12 112.12 3.6746 0 0 0 0.28775 1 25553 25553 13.042 3.6593 1 + 19494 21325 12296 12303 23254 23254 0.16237057067610294 KVHKPLGR 8 Unmodified _KVHKPLGR_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 467.8014221191406 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 100.11 1 103.61 103.11 104.11 3.4974 0 0 0 0.40746 1 24494 24494 0.69038 0 1 19495 9191 12297 12304 23255 23255 0.11776896362141542 KVIAIYHG 8 Unmodified _KVIAIYHG_ 0 0 0 REV__ENSG00000152484|ENST00000282344|USP12 REV__ENSG00000152484|ENST00000282344|USP12 MSMS UPN47_class_I_Rep_1 2 450.5766906738281 2 450.76872 899.522887 NaN NaN NaN NaN NaN NaN NaN 28.931 1 32.689 32.189 33.189 3.7578 0 0 0 0.40738 1 4524 4524 0.79363 0 1 + 19496 19683 12298 12305 23256 23256 0.06910696485306289 KVIAKAVCGRI 11 Unmodified _KVIAKAVCGRI_ 0 0 0 REV__L1PREC2_dup2584|chr5:119138966-119143227:+|2.895099779038699|0.2272499340524444|3.67|151.0|82|2|sense REV__L1PREC2_dup2584|chr5:119138966-119143227:+|2.895099779038699|0.2272499340524444|3.67|151.0|82|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.3516235351562 2 579.362993 1156.71143 0.49204 0.00028507 0.85658 0.00049627 1.3486 0.00078134 579.3643605084915 109.29 0.53153 112.89 112.77 113.3 3.6046 137 66 3 0 0 0 0.65271 1 27058 27058 2.9952 0 1 3291700 + 19497 30701 12299 12306 23257 23257 0.13934606067277855 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS UPN47_class_I_Rep_1 2 567.8289794921875 2 567.829506 1133.64446 0.08701 4.9407E-05 0.27222 0.00015458 0.35923 0.00020398 567.8296288432939 44.996 0.97458 48.696 48.284 49.258 3.6999 103 60 2 0 0 0 0.12306 4 9394 9394;9435;9482;9511 29.437 10.075 1 206830 19498 3323 12300 12307 23258;23259;23260;23261 23258 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS UPN47_class_I_Rep_2 3 567.8296508789062 2 567.829506 1133.64446 0.22696 0.00012888 0.25193 0.00014305 0.4789 0.00027193 567.8296424692712 45.433 0.90908 48.786 48.406 49.315 3.3534 92 54 2 0 0 0 0.20144 6 9596 9511;9555;9596;9652;9670;9681 20.581 9.7814 1 194200 19499 3323 12300 12307 23262;23263;23264;23265;23266;23267 23264 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS UPN47_class_I_Rep_3 4 567.8291015625 2 567.829506 1133.64446 0.24937 0.0001416 0.14581 8.2796E-05 0.39518 0.00022439 567.8295160797312 45.535 0.89429 48.779 48.399 49.293 3.2441 96 53 2 0 0 0 0.24411 4 9651 9611;9651;9694;9738 17.443 10.834 1 205320 19500 3323 12300 12307 23268;23269;23270;23271 23269 0.08298274057165145 KVIDGLETL 9 Unmodified _KVIDGLETL_ 0 0 0 ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3 ENST00000463866.1_1_2:201736120-201746236:-|nuORF ENST00000463866.1_1_2:201736120-201746236:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 494.2894287109375 2 494.289682 986.564812 0.065099 3.2178E-05 -0.24251 -0.00011987 -0.17741 -8.7693E-05 494.28941290889816 51.977 0.62991 55.571 55.271 55.9 3.5932 75 46 2 0 0 0 0.028995 2 11519 11519;11565 57.722 3.8892 1 170920 19501 5704 12301 12308 23272;23273 23272 0.07099207383191697 KVIDGLETL 9 Unmodified _KVIDGLETL_ 0 0 0 ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3 ENST00000463866.1_1_2:201736120-201746236:-|nuORF ENST00000463866.1_1_2:201736120-201746236:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.28948974609375 2 494.289682 986.564812 0.34196 0.00016903 -0.56873 -0.00028112 -0.22677 -0.00011209 494.28922064306164 52.359 0.54993 55.692 55.299 55.849 3.3332 76 43 2 0 0 0 0.12096 1 11688 11688 29.841 3.5724 1 234420 19502 5704 12301 12308 23274 23274 0.07099207383191697 KVIDGLETL 9 Unmodified _KVIDGLETL_ 0 0 0 ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3 ENST00000463866.1_1_2:201736120-201746236:-|nuORF ENST00000463866.1_1_2:201736120-201746236:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.2894592285156 2 494.289682 986.564812 0.28282 0.00013979 -0.4929 -0.00024363 -0.21008 -0.00010384 494.28931812251807 52.46 0.50126 55.666 55.304 55.805 3.2055 70 41 2 0 0 0 0.019142 4 11764 11723;11764;11784;11801 63.961 10.128 1 234640 19503 5704 12301 12308 23275;23276;23277;23278 23276 0.07099207383191697 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MULTI-SECPEP UPN47_class_I_Rep_1 2 545.25390625 2 544.82115 1087.62775 0.43712 0.00023815 0.01338 7.2899E-06 0.4505 0.00024544 544.8217512883522 58.293 1.0425 61.73 61.307 62.349 3.437 142 66 3 0 0 0 0.059918 1 13516 13516 34.932 16.786 1 1008000 19504 5510 12302 12309 23279 23279 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MULTI-SECPEP UPN47_class_I_Rep_2 3 545.2540283203125 2 544.82115 1087.62775 0.48899 0.00026641 0.11086 6.0397E-05 0.59985 0.00032681 544.8215829325634 58.544 1.1439 61.826 61.41 62.554 3.2818 186 70 5 0 0 0 0.044065 1 13611 13611 33.445 16.332 1 778360 19505 5510 12302 12309 23280 23280 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MULTI-SECPEP UPN47_class_I_Rep_3 4 545.2540283203125 2 544.82115 1087.62775 0.32854 0.000179 0.36643 0.00019964 0.69497 0.00037864 544.8217620487881 58.64 1.2257 61.806 61.399 62.625 3.1658 187 76 5 0 0 0 0.059918 1 13691 13691 34.932 17.819 1 919800 19506 5510 12302 12309 23281 23281 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MULTI-MSMS UPN48_class_I_Rep_1 5 544.8213500976562 2 544.82115 1087.62775 0.55143 0.00030043 -0.32278 -0.00017586 0.22865 0.00012457 544.8208040747112 58.669 0.78334 62.156 61.752 62.536 3.487 108 50 3 0 0 0 0.10956 3 12814 12814;12855;12894 32.037 32.037 1 267050 19507 5510 12302 12309 23282;23283;23284 23282 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MULTI-MSMS UPN48_class_I_Rep_2 6 544.821044921875 2 544.82115 1087.62775 0.57404 0.00031275 -0.23735 -0.00012931 0.33668 0.00018343 544.8209027148934 58.614 0.66442 62.112 61.774 62.439 3.4987 71 38 2 0 0 0 0.10956 3 12824 12824;12862;12877 32.037 14.925 1 347590 19508 5510 12302 12309 23285;23286;23287 23285 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MSMS UPN48_class_I_Rep_2 6 544.8206787109375 2 544.82115 1087.62775 NaN NaN NaN NaN NaN NaN NaN 59.015 1 62.514 62.014 63.014 3.4987 0 0 0 0.3377 1 12907 12907 8.7454 0 1 19509 5510 12302 12309 23288 23288 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MULTI-MSMS UPN48_class_I_Rep_3 7 544.8215942382812 2 544.82115 1087.62775 0.43319 0.00023601 0.020591 1.1218E-05 0.45378 0.00024723 544.8210402672591 58.436 0.71503 61.959 61.672 62.387 3.5231 96 48 3 0 0 0 0.19092 1 12720 12720 21.59 12.845 1 291880 19510 5510 12302 12309 23289 23289 0.08743773171227076 KVILLLKIVV 10 Unmodified _KVILLLKIVV_ 0 0 0 REV__Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|31|3|sense REV__Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 569.41845703125 2 569.420303 1136.82605 NaN NaN NaN NaN NaN NaN NaN 41.902 1 45.547 45.047 46.047 3.6458 0 0 0 0.53105 1 7621 7621 0 0 1 + 19511 32779 12303 12310 23290 23290 0.26311238820858307 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN47_class_I_Rep_3 4 483.6460266113281 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 84.311 1 87.672 87.172 88.172 3.3615 0 0 0 0.40038 1 21159 21159 0.6015 0 1 + 19512 23978 12304 12311 23291 23291 0.18474159281527136 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN48_class_I_Rep_2 6 483.6466369628906 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 82.869 1 86.538 86.038 87.038 3.669 0 0 0 0.40038 1 19684 19684 0.6015 0 1 + 19513 23978 12304 12311 23292 23292 0.18474159281527136 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN48_class_I_Rep_2 6 483.64666748046875 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 83.484 1 87.166 86.666 87.666 3.6814 0 0 0 0.40038 1 19841 19841 0.6015 0 1 + 19514 23978 12304 12311 23293 23293 0.18474159281527136 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.6463623046875 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 83.49 1 87.218 86.718 87.718 3.7281 0 0 0 0.40038 1 19793 19793 0.6015 0 1 + 19515 23978 12304 12311 23294 23294 0.18474159281527136 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.64703369140625 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 83.884 1 87.612 87.112 88.112 3.7281 0 0 0 0.40038 1 19898 19898 0.6015 0 1 + 19516 23978 12304 12311 23295 23295 0.18474159281527136 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.6464538574219 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 89.554 1 93.383 92.883 93.883 3.8293 0 0 0 0.40038 1 21262 21262 0.6015 0 1 + 19517 23978 12304 12311 23296 23296 0.18474159281527136 KVIPILLLG 9 Unmodified _KVIPILLLG_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|134|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.6465148925781 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 90.47 1 94.317 93.817 94.817 3.847 0 0 0 0.40038 1 21469 21469 0.6015 0 1 + 19518 23978 12304 12311 23297 23297 0.18474159281527136 KVITTTTI 8 Unmodified _KVITTTTI_ 0 0 0 REV__L1MC5_dup6792|chr7:149199672-149200250:-|1.0312461288969628|0.0897685874364662|3.52|151.0|26|1|anti-sense REV__L1MC5_dup6792|chr7:149199672-149200250:-|1.0312461288969628|0.0897685874364662|3.52|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 438.7723388671875 2 438.773668 875.532783 NaN NaN NaN NaN NaN NaN NaN 60.699 1 64.177 63.677 64.677 3.4785 0 0 0 0.40738 1 13425 13425 0.79363 0 1 + 19519 27092 12305 12312 23298 23298 0.09003839700039862 KVKCKRKY 8 Unmodified _KVKCKRKY_ 0 0 0 REV__L1ME4b_dup14879|chr12:45952382-45952559:-|1.8351661837120996|0.2130156754078515|3.11|151.0|6|2|sense REV__L1ME4b_dup14879|chr12:45952382-45952559:-|1.8351661837120996|0.2130156754078515|3.11|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 526.8214721679688 2 526.823504 1051.63245 NaN NaN NaN NaN NaN NaN NaN 31.275 1 31.275 30.775 31.775 0 0 0 0 0.40604 1 5204 5204 2.5775 0.51773 1 + 19520 28258 12306 12313 23299 23299 0.10870378832987626 KVKCKRKY 8 Unmodified _KVKCKRKY_ 0 0 0 REV__L1ME4b_dup14879|chr12:45952382-45952559:-|1.8351661837120996|0.2130156754078515|3.11|151.0|6|2|sense REV__L1ME4b_dup14879|chr12:45952382-45952559:-|1.8351661837120996|0.2130156754078515|3.11|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 526.8213500976562 2 526.823504 1051.63245 NaN NaN NaN NaN NaN NaN NaN 110.65 1 114.18 113.68 114.68 3.529 0 0 0 0.40604 1 27150 27150 2.5775 0.51773 1 + 19521 28258 12306 12313 23300 23300 0.10870378832987626 KVKDEPQRR 9 Unmodified _KVKDEPQRR_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000460563.5_1_1:26799103-26800238:+|nuORF;ENST00000586264.1_1_17:74341918-74342044:+|nuORF;ENSG00000182952|ENST00000377575|HMGN4 ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MSMS UPN46_class_I_Rep_3 1 578.3333129882812 2 578.333279 1154.652 -0.10133 -5.8605E-05 -0.0025603 -1.4807E-06 -0.10389 -6.0085E-05 578.3332232601429 12.406 0.4662 12.406 12.34 12.807 0 105 46 4 0 0 0 0.048729 1 106 106 49.527 18.259 1 271150 19522 5469 12307 12314 23301 23301 0.08086426377462885 KVKFCKAF 8 Unmodified _KVKFCKAF_ 0 0 0 REV__HUERS-P1-int_dup138|chr4:83097270-83097860:+|1.7627831706188812|0.0081137205866926|7.76|151.0|11|2|sense REV__HUERS-P1-int_dup138|chr4:83097270-83097860:+|1.7627831706188812|0.0081137205866926|7.76|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 485.7813720703125 2 485.780773 969.546994 0.13643 6.6276E-05 1.5935 0.00077409 1.7299 0.00084037 485.7813759325354 107.79 0.15203 111.42 111.36 111.51 3.6313 25 11 3 0 0 0 0.82752 1 26000 26000 5.7604 0.028577 1 8547900 + 19523 23969 12308 12315 23302 23302 0.0610021364733484 KVKGFFWRK 9 Unmodified _KVKGFFWRK_ 0 0 0 REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|155|3|sense MSMS UPN48_class_I_Rep_1 5 598.3583984375 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 95.931 1 99.544 99.044 100.04 3.6124 0 0 0 0.4007 1 23109 23109 0.52476 0 1 + 19524 24848 12309 12316 23303 23303 0.11302000493105879 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 526.822509765625 2 526.821818 1051.62908 0.33307 0.00017547 0.72229 0.00038052 1.0554 0.00055599 526.8221212221123 108.83 0.1824 108.83 108.69 108.88 0 48 17 4 0 0 0 0.11959 1 26622 26622 7.9102 0.62092 1 78468000 19525 33147 12310 12317 23304 23304 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.8218383789062 2 526.821818 1051.62908 0.44632 0.00023513 -0.19928 -0.00010499 0.24703 0.00013014 527.3231803048009 110.73 0.1694 114.31 114.27 114.44 3.5835 37 19 3 0 0 0 0.40174 1 27301 27301 7.9102 2.1783 1 672160 19526 33147 12310 12317 23305 23305 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 527.3693237304688 2 526.821818 1051.62908 0.32725 0.0001724 0.22201 0.00011696 0.54926 0.00028936 526.8219991381072 109.34 1.2322 112.87 112.69 113.92 3.5307 366 174 3 0 0 0 0.12235 1 26759 26759 2.0598 2.0598 1 17503000 19527 33147 12310 12317 23306 23306 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 526.821818 1051.62908 0.44598 0.00023495 -0.13955 -7.3519E-05 0.30643 0.00016143 526.8218605311264 109.28 1.0779 112.88 112.76 113.84 3.6046 0.0099948 -0.00022595 NaN 2.0598 318 145 3 NaN NaN NaN NaN 0 NaN NaN 0 7698800 19528 33147 12310 12317 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 526.821818 1051.62908 0.32713 0.00017234 -0.012436 -6.5516E-06 0.31469 0.00016579 526.8217301863311 110.82 0.16249 114.35 114.25 114.42 3.5271 -0.10296 0.00012253 NaN 7.9102 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 447290 19529 33147 12310 12317 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 526.821818 1051.62908 0.42085 0.00022172 0.10198 5.3726E-05 0.52284 0.00027544 526.822000245953 109.28 0.29152 112.81 112.7 112.99 3.5347 -0.06417 2.8541E-05 NaN 2.0598 101 39 3 NaN NaN NaN NaN 0 NaN NaN 0 13474000 19530 33147 12310 12317 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.821818 1051.62908 0.30109 0.00015862 -1.3412 -0.00070658 -1.0401 -0.00054796 527.3226708307265 111.04 0.033669 114.67 114.64 114.68 3.6326 0.21588 -0.0012775 NaN 7.9102 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 12929 19531 33147 12310 12317 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.821818 1051.62908 0.30131 0.00015873 0.086025 4.532E-05 0.38733 0.00020405 526.821803596276 109.28 0.33161 112.92 112.86 113.2 3.6321 0.041896 1.1729E-05 NaN 2.0598 119 42 3 NaN NaN NaN NaN 0 NaN NaN 0 5030600 19532 33147 12310 12317 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.821818 1051.62908 0.40252 0.00021206 -0.09092 -4.7899E-05 0.3116 0.00016416 526.8216336786377 110.81 0.099556 114.48 114.41 114.51 3.669 0.028567 3.9839E-05 NaN 7.9102 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 46943 19533 33147 12310 12317 0.10533452050663072 KVKHAVGKW 9 Unmodified _KVKHAVGKW_ 0 0 0 Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense Tigger1_dup6092|chr8:11312349-11314013:-|1.4984061990003752|0.2951195436325224|2.34|151.0|71|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.821818 1051.62908 0.40242 0.000212 -0.039844 -2.0991E-05 0.36258 0.00019101 526.8218969015421 109.22 0.97916 112.89 112.8 113.77 3.6715 0.02003 -0.00012089 NaN 2.0598 233 130 2 NaN NaN NaN NaN 0 NaN NaN 0 6169700 19534 33147 12310 12317 0.10533452050663072 KVKHLLCW 8 Unmodified _KVKHLLCW_ 0 0 0 L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|195|1|anti-sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|195|1|anti-sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|195|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7979736328125 2 513.799497 1025.58444 NaN NaN NaN NaN NaN NaN NaN 89.806 1 93.431 92.931 93.931 3.6255 0 0 0 0.40738 1 21578 21578 0.79363 0 1 19535 13985 12311 12318 23307 23307 0.07267304912943473 KVKIKMKELI 10 Unmodified _KVKIKMKELI_ 0 0 0 REV__L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|43|3|anti-sense REV__L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 615.4041137695312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 40.226 1 40.226 39.726 40.726 0 0 0 0 0.53105 1 7793 7793 0.40072 0 1 + 19536 28312 12312 12319 23308 23308 0.1888550307544392 KVKILKATR 9 Unmodified _KVKILKATR_ 0 0 0 L1MEg_dup10068|chr11:76017345-76018196:+|1.0686372387343652|0.0482837483963096|4.47|151.0|3|1|sense L1MEg_dup10068|chr11:76017345-76018196:+|1.0686372387343652|0.0482837483963096|4.47|151.0|3|1|sense L1MEg_dup10068|chr11:76017345-76018196:+|1.0686372387343652|0.0482837483963096|4.47|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 528.3744506835938 2 528.866226 1055.7179 0.45652 0.00024144 -0.37818 -0.00020001 0.07834 4.1432E-05 528.8660169097266 109.46 0.13684 113.06 113 113.14 3.6046 19 14 2 0 0 0 0.12462 1 27020 27020 1.8442 0 1 392180 19537 13351 12313 12320 23309 23309 0.19226867290285554 KVKILLKTW 9 Unmodified _KVKILLKTW_ 0 0 0 Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|135|3|anti-sense Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|135|3|anti-sense Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.8811645507812 2 564.878802 1127.74305 NaN NaN NaN NaN NaN NaN NaN 109.68 1 113.35 112.85 113.85 3.6715 0 0 0 0.40098 1 26117 26117 0.45834 0 1 19538 33055 12314 12321 23310 23310 0.18428922092880384 KVKILLKTW 9 Unmodified _KVKILLKTW_ 0 0 0 Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|135|3|anti-sense Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|135|3|anti-sense Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.881103515625 2 564.878802 1127.74305 NaN NaN NaN NaN NaN NaN NaN 109.55 1 113.22 112.72 113.72 3.67 0 0 0 0.39518 1 26020 26020 1.8442 0 1 19539 33055 12314 12321 23311 23311 0.18428922092880384 KVKIRRRIRIL 11 Unmodified _KVKIRRRIRIL_ 0 0 0 nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1 nc|ENSG00000105479|Q96M63-5|ODAD1 nc|ENSG00000105479|Q96M63-5|ODAD1 MSMS UPN47_class_I_Rep_3 4 483.9805603027344 3 484.343811 1450.0096 NaN NaN NaN NaN NaN NaN NaN 98.325 1 101.76 101.26 102.26 3.4328 0 0 0 0.38417 1 24354 24354 0.094841 0.094841 1 19540 1739 12315 12322 23312 23312 0.30260025375105215 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 586.4163208007812 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 114.76 1 114.76 114.26 115.26 0 0 0 0 0.53105 1 28375 28375 0 0 1 + 19541 28518 12316 12323 23313 23313 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 586.69921875 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 114.89 1 114.89 114.39 115.39 0 0 0 0 0.53105 1 28411 28411 0 0 1 + 19542 28518 12316 12323 23314 23314 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 586.69482421875 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 116.05 1 116.05 115.55 116.55 0 0 0 0 0.53105 1 28717 28717 0 0 1 + 19543 28518 12316 12323 23315 23315 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 586.18896484375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 116.42 1 116.42 115.92 116.92 0 0 0 0 0.53105 1 28818 28818 0 0 1 + 19544 28518 12316 12323 23316 23316 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.7505493164062 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 65.159 1 68.414 67.914 68.914 3.2556 0 0 0 0.53105 1 15571 15571 0 0 1 + 19545 28518 12316 12323 23317 23317 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.7443237304688 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 67.849 1 71.113 70.613 71.613 3.2636 0 0 0 0.53105 1 16386 16386 0 0 1 + 19546 28518 12316 12323 23318 23318 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.7434692382812 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 67.954 1 71.223 70.723 71.723 3.2696 0 0 0 0.53105 1 16416 16416 0 0 1 + 19547 28518 12316 12323 23319 23319 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.3052978515625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 71.664 1 74.954 74.454 75.454 3.2899 0 0 0 0.53105 1 17528 17528 0 0 1 + 19548 28518 12316 12323 23320 23320 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4171142578125 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 71.715 1 75.005 74.505 75.505 3.2899 0 0 0 0.53105 1 17544 17544 0 0 1 + 19549 28518 12316 12323 23321 23321 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4177856445312 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 71.848 1 75.138 74.638 75.638 3.2899 0 0 0 0.53105 1 17585 17585 0 0 1 + 19550 28518 12316 12323 23322 23322 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4161376953125 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 73.328 1 76.633 76.133 77.133 3.3048 0 0 0 0.53105 1 18025 18025 0 0 1 + 19551 28518 12316 12323 23323 23323 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4165649414062 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 75.808 1 79.129 78.629 79.629 3.3216 0 0 0 0.53105 1 18738 18738 0 0 1 + 19552 28518 12316 12323 23324 23324 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4166870117188 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 81.87 1 85.254 84.754 85.754 3.3839 0 0 0 0.53105 1 20401 20401 0 0 1 + 19553 28518 12316 12323 23325 23325 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.415771484375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 82.351 1 85.749 85.249 86.249 3.3984 0 0 0 0.53105 1 20527 20527 0 0 1 + 19554 28518 12316 12323 23326 23326 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.416259765625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 82.654 1 86.052 85.552 86.552 3.3984 0 0 0 0.53105 1 20604 20604 0 0 1 + 19555 28518 12316 12323 23327 23327 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4163208007812 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 83.747 1 87.159 86.659 87.659 3.4116 0 0 0 0.53105 1 20882 20882 0 0 1 + 19556 28518 12316 12323 23328 23328 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4164428710938 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 84.285 1 87.708 87.208 88.208 3.4232 0 0 0 0.53105 1 21020 21020 0 0 1 + 19557 28518 12316 12323 23329 23329 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 586.4163818359375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 101.2 1 104.7 104.2 105.2 3.5063 0 0 0 0.53105 1 24707 24707 0 0 1 + 19558 28518 12316 12323 23330 23330 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.277587890625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 65.137 1 68.316 67.816 68.816 3.1795 0 0 0 0.53105 1 15624 15624 0 0 1 + 19559 28518 12316 12323 23331 23331 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.3157958984375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 65.531 1 68.711 68.211 69.211 3.1795 0 0 0 0.53105 1 15744 15744 0 0 1 + 19560 28518 12316 12323 23332 23332 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.7704467773438 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 68.068 1 71.266 70.766 71.766 3.1977 0 0 0 0.53105 1 16517 16517 0 0 1 + 19561 28518 12316 12323 23333 23333 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.4168701171875 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 72.984 1 76.211 75.711 76.711 3.2271 0 0 0 0.53105 1 17997 17997 0 0 1 + 19562 28518 12316 12323 23334 23334 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.41650390625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 76.551 1 79.808 79.308 80.308 3.2573 0 0 0 0.53105 1 19036 19036 0 0 1 + 19563 28518 12316 12323 23335 23335 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.4163208007812 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 76.886 1 80.155 79.655 80.655 3.269 0 0 0 0.53105 1 19130 19130 0 0 1 + 19564 28518 12316 12323 23336 23336 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.4163818359375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 79.66 1 82.955 82.455 83.455 3.295 0 0 0 0.53105 1 19922 19922 0 0 1 + 19565 28518 12316 12323 23337 23337 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.4154663085938 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 90.109 1 93.506 93.006 94.006 3.3976 0 0 0 0.53105 1 22586 22586 0 0 1 + 19566 28518 12316 12323 23338 23338 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 586.416748046875 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 90.498 1 93.895 93.395 94.395 3.3976 0 0 0 0.53105 1 22681 22681 0 0 1 + 19567 28518 12316 12323 23339 23339 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.3013916015625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 68.041 1 71.549 71.049 72.049 3.5083 0 0 0 0.53105 1 15667 15667 0 0 1 + 19568 28518 12316 12323 23340 23340 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.4159545898438 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 68.254 1 71.762 71.262 72.262 3.5083 0 0 0 0.53105 1 15730 15730 0 0 1 + 19569 28518 12316 12323 23341 23341 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.8064575195312 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 70.316 1 73.852 73.352 74.352 3.5359 0 0 0 0.53105 1 16349 16349 0 0 1 + 19570 28518 12316 12323 23342 23342 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.4176635742188 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 72.862 1 76.427 75.927 76.927 3.5645 0 0 0 0.53105 1 17079 17079 0 0 1 + 19571 28518 12316 12323 23343 23343 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.4149780273438 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 72.995 1 76.559 76.059 77.059 3.5645 0 0 0 0.53105 1 17118 17118 0 0 1 + 19572 28518 12316 12323 23344 23344 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.32666015625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 73.489 1 77.067 76.567 77.567 3.5779 0 0 0 0.53105 1 17257 17257 0 0 1 + 19573 28518 12316 12323 23345 23345 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.4168701171875 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 73.705 1 77.282 76.782 77.782 3.5779 0 0 0 0.53105 1 17316 17316 0 0 1 + 19574 28518 12316 12323 23346 23346 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.4161987304688 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 78.127 1 81.749 81.249 82.249 3.6222 0 0 0 0.53105 1 18529 18529 0 0 1 + 19575 28518 12316 12323 23347 23347 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.41552734375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 83.808 1 87.49 86.99 87.99 3.6814 0 0 0 0.53105 1 19932 19932 0 0 1 + 19576 28518 12316 12323 23348 23348 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 586.416015625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 88.066 1 91.794 91.294 92.294 3.7279 0 0 0 0.53105 1 20964 20964 0 0 1 + 19577 28518 12316 12323 23349 23349 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.7313842773438 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 66.984 1 70.492 69.992 70.992 3.5077 0 0 0 0.53105 1 15257 15257 0 0 1 + 19578 28518 12316 12323 23350 23350 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.4159545898438 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 68.453 1 71.962 71.462 72.462 3.5094 0 0 0 0.53105 1 15696 15696 0 0 1 + 19579 28518 12316 12323 23351 23351 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.416015625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 79.363 1 83.005 82.505 83.505 3.6423 0 0 0 0.53105 1 18815 18815 0 0 1 + 19580 28518 12316 12323 23352 23352 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.41650390625 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 81.471 1 85.156 84.656 85.656 3.685 0 0 0 0.53105 1 19288 19288 0 0 1 + 19581 28518 12316 12323 23353 23353 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.4163818359375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 82.732 1 86.438 85.938 86.938 3.7066 0 0 0 0.53105 1 19610 19610 0 0 1 + 19582 28518 12316 12323 23354 23354 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.4168701171875 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 82.872 1 86.578 86.078 87.078 3.7066 0 0 0 0.53105 1 19643 19643 0 0 1 + 19583 28518 12316 12323 23355 23355 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.4161376953125 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 97.523 1 101.43 100.93 101.93 3.9022 0 0 0 0.53105 1 23115 23115 0 0 1 + 19584 28518 12316 12323 23356 23356 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.4164428710938 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 105.05 1 108.76 108.26 109.26 3.7192 0 0 0 0.53105 1 24796 24796 0 0 1 + 19585 28518 12316 12323 23357 23357 0.23903684904234979 KVKKKKALTK 10 Unmodified _KVKKKKALTK_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 586.1888427734375 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 111.55 1 115.21 114.71 115.71 3.6654 0 0 0 0.53105 1 26478 26478 0 0 1 + 19586 28518 12316 12323 23358 23358 0.23903684904234979 KVKKKKKY 8 Unmodified _KVKKKKKY_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 525.7721557617188 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 58.596 1 61.877 61.377 62.377 3.2818 0 0 0 0.40738 1 13576 13576 0.79363 0.10326 1 19587 11144 12317 12324 23359 23359 0.18967768778634309 KVKKKKKY 8 Unmodified _KVKKKKKY_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 525.7951049804688 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 62.54 1 65.796 65.296 66.296 3.2558 0 0 0 0.40738 1 14776 14776 0.79363 0 1 19588 11144 12317 12324 23360 23360 0.18967768778634309 KVKKKKKY 8 Unmodified _KVKKKKKY_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 525.7955322265625 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 62.365 1 65.531 65.031 66.031 3.1667 0 0 0 0.40738 1 14780 14780 0.79363 0.19213 1 19589 11144 12317 12324 23361 23361 0.18967768778634309 KVKKKKKY 8 Unmodified _KVKKKKKY_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 525.7766723632812 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 70.218 1 73.753 73.253 74.253 3.5359 0 0 0 0.40738 1 16321 16321 0.79363 0.19213 1 19590 11144 12317 12324 23362 23362 0.18967768778634309 KVKKKNPA 8 Unmodified _KVKKKNPA_ 0 0 0 REV__nc|ENSG00000198825|Q9Y2H2-3|INPP5F REV__nc|ENSG00000198825|Q9Y2H2-3|INPP5F MSMS UPN47_class_I_Rep_1 2 456.8028564453125 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 42.56 1 46.247 45.747 46.747 3.6875 0 0 0 0.40746 1 8664 8664 0.69038 0 1 + 19591 21150 12318 12325 23363 23363 0.13230360785019002 KVKKLYNTIF 10 Unmodified _KVKKLYNTIF_ 0 0 0 L1ME4a_dup1612|chr1:151213896-151214341:-|1.3250649595350008|0.0382092633008974|5.12|151.0|4|1|sense L1ME4a_dup1612|chr1:151213896-151214341:-|1.3250649595350008|0.0382092633008974|5.12|151.0|4|1|sense L1ME4a_dup1612|chr1:151213896-151214341:-|1.3250649595350008|0.0382092633008974|5.12|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 627.383056640625 2 627.384448 1252.75434 NaN NaN NaN NaN NaN NaN NaN 104.3 1 107.92 107.42 108.42 3.6247 0 0 0 0.53105 1 25128 25128 3.5965 0 1 19592 12855 12319 12326 23364 23364 0.1380769939635229 KVKLIVLV 8 Unmodified _KVKLIVLV_ 0 0 0 ENSG00000158769|ENST00000368026|F11R ENSG00000158769|ENST00000368026|F11R ENSG00000158769|ENST00000368026|F11R MSMS UPN46_class_I_Rep_3 1 456.33477783203125 2 456.336239 910.657924 NaN NaN NaN NaN NaN NaN NaN 109.19 1 109.19 108.69 109.69 0 0 0 0 0.40604 1 26779 26779 2.5775 0 1 19593 3811 12320 12327 23365 23365 0.19902176627067547 KVKLKHPD 8 Unmodified _KVKLKHPD_ 0 0 0 REV__L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|19|1|sense REV__L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|19|1|sense MSMS UPN46_class_I_Rep_3 1 482.7956237792969 2 482.800552 963.58655 NaN NaN NaN NaN NaN NaN NaN 33.129 1 33.129 32.629 33.629 0 0 0 0 0.40604 1 5758 5758 2.5775 1.7838 1 + 19594 30339 12321 12328 23366 23366 0.10330056922407493 KVKMCILCN 9 Unmodified _KVKMCILCN_ 0 0 0 L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|21|3|sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|21|3|sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|21|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 526.8382568359375 2 526.276683 1050.53881 0.3398 0.00017883 0.056508 2.9739E-05 0.39631 0.00020857 526.2766230588967 63.904 0.22365 67.078 66.917 67.141 3.1741 21 19 2 0 0 0 0.12444 1 15243 15243 2.0598 0.21551 1 36195 19595 12798 12322 12329 23367 23367 0.015565753440341723 KVKNPPKQ 8 Unmodified _KVKNPPKQ_ 0 0 0 REV__L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|20|1|sense REV__L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|20|1|sense MSMS UPN48_class_I_Rep_1 5 469.7916259765625 2 469.792727 937.5709 NaN NaN NaN NaN NaN NaN NaN 56.016 1 59.517 59.017 60.017 3.5014 0 0 0 0.40746 1 12013 12013 0.69038 0 1 + 19596 24346 12323 12330 23368 23368 0.09961770405357129 KVKNRMVC 8 Unmodified _KVKNRMVC_ 0 0 0 MER47A_dup529|chr3:172200386-172200741:+|1.5529301044470656|0.0112090870321831|7.11|151.0|16|1|anti-sense MER47A_dup529|chr3:172200386-172200741:+|1.5529301044470656|0.0112090870321831|7.11|151.0|16|1|anti-sense MER47A_dup529|chr3:172200386-172200741:+|1.5529301044470656|0.0112090870321831|7.11|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 489.2652282714844 2 489.27279 976.531026 NaN NaN NaN NaN NaN NaN NaN 50.077 1 53.42 52.92 53.92 3.3431 0 0 0 0.39624 1 10976 10976 9.3474 1.4373 1 19597 16005 12324 12331 23369 23369 0.04182184138790035 KVKRNSYT 8 Unmodified _KVKRNSYT_ 0 0 0 L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|16|1|sense L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|16|1|sense L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|16|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 497.7648010253906 2 498.285266 994.555979 -0.27897 -0.000139 -0.16896 -8.4188E-05 -0.44792 -0.00022319 498.2850533332773 38.185 0.99492 41.426 41.017 42.012 3.2414 117 72 2 0 0 0 0.72333 1 7282 7282 0.69038 0 1 122050 19598 9952 12325 12332 23370 23370 0.058482785373598745 KVKRNSYT 8 Unmodified _KVKRNSYT_ 0 0 0 L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|16|1|sense L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|16|1|sense L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|16|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 498.285266 994.555979 -0.16264 -8.1041E-05 -0.15602 -7.7742E-05 -0.31866 -0.00015878 498.28508810291544 37.982 0.81343 41.37 41.06 41.873 3.3879 -0.027817 5.9597E-06 NaN 0.69038 110 66 2 NaN NaN NaN NaN 0 NaN NaN 0 122530 19599 9952 12325 12332 0.058482785373598745 KVKSVPVHFSR 11 Unmodified _KVKSVPVHFSR_ 0 0 0 REV__ENSG00000086102.19,NFX1,chr9,+,I9.1,33319128,33328580|27|9.15|2|intron REV__ENSG00000086102.19,NFX1,chr9,+,I9.1,33319128,33328580|27|9.15|2|intron MSMS UPN47_class_I_Rep_1 2 642.3080444335938 2 642.382771 1282.75099 NaN NaN NaN NaN NaN NaN NaN 86.628 1 90.243 89.743 90.743 3.6153 0 0 0 0.38417 1 21641 21641 1.1933 0 1 + 19600 17966 12326 12333 23371 23371 0.12092449342367217 KVKVEYSEI 9 Unmodified _KVKVEYSEI_ 0 0 0 Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|20|1|sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|20|1|sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|20|1|sense MSMS UPN47_class_I_Rep_2 3 547.3321533203125 2 547.808239 1093.60193 NaN NaN NaN NaN NaN NaN NaN 13.654 1 17.042 16.542 17.542 3.388 0 0 0 0.4007 1 378 378 0.52476 0.52476 1 19601 516 12327 12334 23372 23372 0.05886878928936312 KVLAKKRDP 9 Unmodified _KVLAKKRDP_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5;COG5|p.S363Lfs*9|1|0.29|ENSG00000164597|chr7:107362065-107362065|A/-|frameshift_variant nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MSMS UPN47_class_I_Rep_2 3 527.838623046875 2 527.840208 1053.66586 NaN NaN NaN NaN NaN NaN NaN 93.372 1 96.841 96.341 97.341 3.4687 0 0 0 0.39518 1 23043 23043 1.8442 1.0506 1 19602 4119 12328 12335 23373 23373 0.14117703876559062 KVLAKKRDP 9 Unmodified _KVLAKKRDP_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5;COG5|p.S363Lfs*9|1|0.29|ENSG00000164597|chr7:107362065-107362065|A/-|frameshift_variant nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MSMS UPN47_class_I_Rep_2 3 527.8403930664062 2 527.840208 1053.66586 NaN NaN NaN NaN NaN NaN NaN 93.407 1 96.876 96.376 97.376 3.4687 0 0 0 0.39518 1 23051 23051 1.8442 0.19162 1 19603 4119 12328 12335 23374 23374 0.14117703876559062 KVLARYLKRL 10 Unmodified _KVLARYLKRL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MSMS UPN47_class_I_Rep_1 2 630.92041015625 2 630.419157 1258.82376 0.56181 0.00035418 -1.1026 -0.00069508 -0.54075 -0.0003409 630.4183120708016 107.92 0.34081 111.56 111.39 111.73 3.6355 30 22 2 0 0 0 0.56333 1 26462 26462 1.4819 0 1 2193400 19604 4865 12329 12336 23375 23375 0.2047020313577832 KVLARYLKRL 10 Unmodified _KVLARYLKRL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MATCH UPN47_class_I_Rep_2 3 2 630.419157 1258.82376 0.63451 0.00040001 -0.19083 -0.0001203 0.44368 0.00027971 630.4193126217956 108.1 0.58255 111.63 111.46 112.05 3.5333 -0.0084484 0.00073549 NaN 1.4819 92 61 2 NaN NaN NaN NaN 0 NaN NaN 0 1957200 19605 4865 12329 12336 0.2047020313577832 KVLARYLKRL 10 Unmodified _KVLARYLKRL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MATCH UPN47_class_I_Rep_3 4 2 630.419157 1258.82376 0.51286 0.00032332 0.19781 0.0001247 0.71067 0.00044802 630.4195459874805 108 0.33789 111.54 111.4 111.73 3.5382 -0.10184 0.0012255 NaN 1.4819 55 38 2 NaN NaN NaN NaN 0 NaN NaN 0 2939300 19606 4865 12329 12336 0.2047020313577832 KVLARYLKRL 10 Unmodified _KVLARYLKRL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MATCH UPN48_class_I_Rep_1 5 2 630.419157 1258.82376 0.42992 0.00027103 -0.93055 -0.00058664 -0.50063 -0.00031561 630.4185184261507 108.07 0.46017 111.7 111.47 111.93 3.6313 0.057273 -0.00019718 NaN 1.4819 67 38 2 NaN NaN NaN NaN 0 NaN NaN 0 2079700 19607 4865 12329 12336 0.2047020313577832 KVLARYLKRL 10 Unmodified _KVLARYLKRL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MATCH UPN48_class_I_Rep_2 6 2 630.419157 1258.82376 0.49611 0.00031276 0.4325 0.00027266 0.92861 0.00058542 630.4198845461344 108.02 0.11688 111.7 111.59 111.71 3.6746 0.053589 0.0015214 NaN 1.4819 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3052100 19608 4865 12329 12336 0.2047020313577832 KVLARYLKRL 10 Unmodified _KVLARYLKRL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MULTI-MATCH UPN48_class_I_Rep_3 7 2 630.419157 1258.82376 0.61044 0.00038483 0.59041 0.0003722 1.2008 0.00075703 630.9197439030419 108.04 0.080879 111.72 111.67 111.75 3.6813 0.081719 0.0017205 NaN 1.4819 21 7 4 NaN NaN NaN NaN 0 NaN NaN 0 2376900 19609 4865 12329 12336 0.2047020313577832 KVLFFCCV 8 Unmodified _KVLFFCCV_ 0 0 0 L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|343|3|anti-sense;L1PA5_dup2513|chr4:17644246-17646742:+|1.2342509023832755|0.4465442800062927|1.47|151.0|158|3|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|343|3|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|343|3|anti-sense MSMS UPN47_class_I_Rep_3 4 480.21746826171875 2 479.748085 957.481616 NaN NaN NaN NaN NaN NaN NaN 119.28 1 122.7 122.2 123.2 3.4157 0 0 0 0.40738 1 29453 29453 0.79363 0 1 19610 14450 12330 12337 23376 23376 0.0011747612998078694 KVLGIVVGV 9 Unmodified _KVLGIVVGV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN47_class_I_Rep_1 2 442.3020935058594 2 442.302396 882.590239 0.053235 2.3546E-05 0.14096 6.2348E-05 0.1942 8.5894E-05 442.3022602815299 58.271 0.7961 61.708 61.307 62.103 3.437 88 49 3 0 0 0 0.066041 1 13419 13419 42.095 20.348 1 243830 19611 2493 12331 12338 23377 23377 0.14424726696279322 KVLGVNRGD 9 Unmodified _KVLGVNRGD_ 0 0 0 L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2774963378906 2 479.277441 956.540328 0.14709 7.0495E-05 -0.22232 -0.00010655 -0.075239 -3.606E-05 479.2771684929997 78.125 0.13701 81.554 81.532 81.669 3.4289 20 14 2 0 0 0 0.48846 1 19423 19423 1.8442 0 1 99688 19612 9138 12332 12339 23378 23378 0.06031992020314192 KVLGVNRGD 9 Unmodified _KVLGVNRGD_ 0 0 0 L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2760314941406 2 479.277441 956.540328 0.14833 7.109E-05 -0.15424 -7.3924E-05 -0.0059139 -2.8344E-06 479.27723613602654 78.438 0.39158 81.883 81.654 82.046 3.4456 49 38 2 0 0 0 0.48846 2 19465 19465;19517 1.8442 0.45834 1 61440 19613 9138 12332 12339 23379;23380 23379 0.06031992020314192 KVLGVNRGD 9 Unmodified _KVLGVNRGD_ 0 0 0 L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense L1M5_dup30214|chr9:129954026-129954719:+|2.981998066628036|0.0831096069767489|5.17|151.0|11|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 479.277441 956.540328 0.20266 9.7131E-05 -0.29638 -0.00014205 -0.093717 -4.4917E-05 479.2772397181769 78.062 0.036194 81.405 81.387 81.423 3.3428 -0.074813 -5.8588E-05 NaN 1.8442 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 53470 19614 9138 12332 12339 0.06031992020314192 KVLKERNFY 9 Unmodified _KVLKERNFY_ 0 0 0 L1M1_dup4691|chr9:62802820-62804690:-|9.579569748556462|0.3828187301123126|4.65|151.0|21|1|sense;L1M1_dup4699|chr9:63810943-63812812:+|1.2476832223946344|0.0307123637749145|5.34|150.0|39|2|sense L1M1_dup4691|chr9:62802820-62804690:-|9.579569748556462|0.3828187301123126|4.65|151.0|21|1|sense L1M1_dup4691|chr9:62802820-62804690:-|9.579569748556462|0.3828187301123126|4.65|151.0|21|1|sense MSMS UPN48_class_I_Rep_3 7 598.843017578125 2 598.842948 1195.67134 NaN NaN NaN NaN NaN NaN NaN 33.722 1 37.401 36.901 37.901 3.6797 0 0 0 0.38916 1 5279 5279 3.2813 0.28607 1 19615 8585 12333 12340 23381 23381 0.08133382668370359 KVLKIIKILIE 11 Unmodified _KVLKIIKILIE_ 0 0 0 HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|26|3|sense MSMS UPN48_class_I_Rep_3 7 437.3108215332031 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 84.653 1 88.402 87.902 88.902 3.7494 0 0 0 0.38417 1 20089 20089 0.094841 0 1 19616 7957 12334 12341 23382 23382 0.2687456456685595 KVLKKRKFV 9 Unmodified _KVLKKRKFV_ 0 0 0 Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|11|1|sense Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|11|1|sense Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 573.3970947265625 2 573.397693 1144.78083 NaN NaN NaN NaN NaN NaN NaN 85.252 1 85.252 84.752 85.752 0 0 0 0 0.4029 1 20328 20328 0 0 1 19617 33293 12335 12342 23383 23383 0.21423433078348353 KVLKLARRG 9 Unmodified _KVLKLARRG_ 0 0 0 AluSx1_dup100562|chr18:2659120-2659416:-|1.077240996875504|0.0066092453573688|7.35|151.0|1|1|sense AluSx1_dup100562|chr18:2659120-2659416:-|1.077240996875504|0.0066092453573688|7.35|151.0|1|1|sense AluSx1_dup100562|chr18:2659120-2659416:-|1.077240996875504|0.0066092453573688|7.35|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 520.8541870117188 2 520.856193 1039.69783 NaN NaN NaN NaN NaN NaN NaN 109.5 1 109.5 109 110 0 0 0 0 0.39518 1 26899 26899 1.8442 1.1539 1 19618 307 12336 12343 23384 23384 0.17957116350362412 KVLLHLLK 8 Unmodified _KVLLHLLK_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_3 4 482.3412780761719 2 482.339313 962.664072 NaN NaN NaN NaN NaN NaN NaN 75.084 1 78.331 77.831 78.831 3.2464 0 0 0 0.40738 1 18609 18609 0.79363 0 1 19619 4388 12337 12344 23385 23385 0.18124694858613566 KVLLHLLK 8 Unmodified _KVLLHLLK_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_3 4 482.34039306640625 2 482.339313 962.664072 NaN NaN NaN NaN NaN NaN NaN 75.597 1 78.854 78.354 79.354 3.2573 0 0 0 0.40738 1 18762 18762 0.79363 0 1 19620 4388 12337 12344 23386 23386 0.18124694858613566 KVLLHLLK 8 Unmodified _KVLLHLLK_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN48_class_I_Rep_2 6 482.3405456542969 2 482.339313 962.664072 NaN NaN NaN NaN NaN NaN NaN 111.93 1 115.6 115.1 116.1 3.6666 0 0 0 0.40738 1 26640 26640 0.79363 0 1 19621 4388 12337 12344 23387 23387 0.18124694858613566 KVLNYYVL 8 Unmodified _KVLNYYVL_ 0 0 0 REV__nc|ENSG00000167536|Q6UX07-3|DHRS13 REV__nc|ENSG00000167536|Q6UX07-3|DHRS13 MULTI-MSMS UPN47_class_I_Rep_2 3 506.29730224609375 2 506.29731 1010.58007 -0.22944 -0.00011616 -0.013522 -6.8462E-06 -0.24296 -0.00012301 506.29719692222153 33.671 0.86243 37.111 36.7 37.562 3.4398 95 57 2 0 0 0 0.82752 1 5985 5985 8.5933 1.8701 1 103690 + 19622 20222 12338 12345 23388 23388 0.07520118971035572 KVLPLNGRR 9 Unmodified _KVLPLNGRR_ 0 0 0 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 MULTI-MSMS UPN47_class_I_Rep_2 3 526.83837890625 2 526.838 1051.66145 0.32136 0.0001693 0.87648 0.00046176 1.1978 0.00063107 526.838090700745 103.16 0.31998 106.69 106.45 106.77 3.5231 60 44 2 0 0 0 0.45688 1 25093 25093 4.756 0 1 425330 + 19623 19520 12339 12346 23389 23389 0.1376823945365686 KVLPLNGRR 9 Unmodified _KVLPLNGRR_ 0 0 0 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31 MSMS UPN47_class_I_Rep_2 3 526.8382568359375 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 93.252 1 96.721 96.221 97.221 3.4687 0 0 0 0.39428 1 23020 23020 2.0598 0 1 + 19624 19520 12339 12346 23390 23390 0.1376823945365686 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MSMS UPN47_class_I_Rep_1 2 570.8480224609375 2 570.848033 1139.68151 0.48488 0.00027679 -0.22316 -0.00012739 0.26172 0.0001494 570.8478791721593 109.29 0.80021 112.89 112.76 113.56 3.6046 242 104 3 0 0 0 0.54466 1 27039 27039 6.2058 0 1 3626400 + 19625 21369 12340 12347 23391 23391 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MSMS UPN47_class_I_Rep_1 2 570.8480834960938 2 570.848033 1139.68151 0.48503 0.00027688 -0.24322 -0.00013884 0.2418 0.00013803 571.3494809256046 110.69 0.29686 114.28 114.14 114.44 3.5835 41 35 2 0 0 0 0.56309 1 27285 27285 1.6526 1.0511 1 418860 + 19626 21369 12340 12347 23392 23392 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MATCH UPN47_class_I_Rep_2 3 2 570.848033 1139.68151 0.63476 0.00036235 -0.23846 -0.00013612 0.3963 0.00022623 570.8479495970586 110.82 0.13528 114.35 114.27 114.41 3.5271 0.035588 2.7048E-06 NaN 1.6526 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 184050 + 19627 21369 12340 12347 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MATCH UPN47_class_I_Rep_2 3 2 570.848033 1139.68151 0.63489 0.00036242 -0.020988 -1.1981E-05 0.6139 0.00035044 570.8480578838629 109.34 0.65723 112.87 112.69 113.34 3.5307 -0.020741 0.00013118 NaN 6.2058 212 90 3 NaN NaN NaN NaN 0 NaN NaN 0 8967500 + 19628 21369 12340 12347 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MATCH UPN47_class_I_Rep_3 4 2 570.848033 1139.68151 0.50512 0.00028835 0.089724 5.1219E-05 0.59484 0.00033956 570.8482088951987 109.27 0.31467 112.81 112.69 113.01 3.5347 -0.079567 0.00025758 NaN 6.2058 106 42 3 NaN NaN NaN NaN 0 NaN NaN 0 6545700 + 19629 21369 12340 12347 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MATCH UPN48_class_I_Rep_1 5 2 570.848033 1139.68151 0.39847 0.00022747 -0.25116 -0.00014337 0.14732 8.4095E-05 570.8479657510504 109.24 0.45123 112.88 112.75 113.2 3.6321 -0.010387 -0.00013161 NaN 6.2058 112 56 3 NaN NaN NaN NaN 0 NaN NaN 0 2773500 + 19630 21369 12340 12347 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MATCH UPN48_class_I_Rep_2 6 2 570.848033 1139.68151 0.48457 0.00027661 -0.15484 -8.839E-05 0.32973 0.00018822 570.8480135830364 109.26 0.6694 112.93 112.81 113.48 3.6715 0.043198 -2.1639E-05 NaN 6.2058 159 90 3 NaN NaN NaN NaN 0 NaN NaN 0 2288700 + 19631 21369 12340 12347 0.11725990393597385 KVLRWGPALT 10 Unmodified _KVLRWGPALT_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MATCH UPN48_class_I_Rep_3 7 2 570.848033 1139.68151 0.46414 0.00026495 -0.070119 -4.0027E-05 0.39402 0.00022492 570.8480960155141 109.27 0.54813 112.95 112.81 113.36 3.6751 0.062847 7.5086E-05 NaN 6.2058 137 75 2 NaN NaN NaN NaN 0 NaN NaN 0 3397700 + 19632 21369 12340 12347 0.11725990393597385 KVLVQNAA 8 Unmodified _KVLVQNAA_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MSMS UPN46_class_I_Rep_3 1 421.75677490234375 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 18.51 1 18.51 18.01 19.01 0 0 0 0 0.40746 1 1629 1629 0.69038 0 1 19633 3006 12341 12348 23393 23393 0.07506106105654453 KVMAMGHW 8 Unmodified _KVMAMGHW_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-SECPEP UPN47_class_I_Rep_1 2 480.2168884277344 2 480.233133 958.451713 -0.34537 -0.00016586 -0.31481 -0.00015118 -0.66017 -0.00031704 480.23299977600806 23.306 0.13081 27.011 26.944 27.075 3.7042 17 10 2 0 0 0 0.72333 1 2845 2845 0.69038 0 1 39657 + 19634 20681 12342 12349 23394 23394 -0.029174628153441517 KVMDEVEKA 9 Unmodified _KVMDEVEKA_ 0 0 0 ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1 ENST00000463912.5_1_7:139083347-139097327:+|nuORF ENST00000463912.5_1_7:139083347-139097327:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 524.7705688476562 2 524.7708 1047.52705 -0.1515 -7.9505E-05 -0.25416 -0.00013337 -0.40566 -0.00021288 524.7706605647805 24.739 0.20996 28.489 28.382 28.592 3.7495 15 13 2 0 0 0 0.47763 1 3296 3296 2.9952 0.69251 1 35288 19635 3454 12343 12350 23395 23395 0.005183731260785862 KVMLQHLKKM 10 Unmodified _KVMLQHLKKM_ 0 0 0 REV__L1PA7_dup9859|chr11:73061020-73067491:+|21.46439024186142|0.1239268404208669|7.44|151.0|131|3|sense REV__L1PA7_dup9859|chr11:73061020-73067491:+|21.46439024186142|0.1239268404208669|7.44|151.0|131|3|sense MSMS UPN46_class_I_Rep_3 1 628.3743286132812 2 628.372504 1254.73045 NaN NaN NaN NaN NaN NaN NaN 33.815 1 33.815 33.315 34.315 0 0 0 0 0.53105 1 5961 5961 0.40072 0 1 + 19636 30191 12344 12351 23396 23396 0.11327819366670155 KVNALQAQV 9 Unmodified _KVNALQAQV_ 0 0 0 ENSG00000141527|ENST00000648509|CARD14;ENST00000571861.5_1_17:78162196-78169468:+|nuORF;nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF;nc|ENSG00000141527|Q9BXL6-2|CARD14 ENSG00000141527|ENST00000648509|CARD14 ENSG00000141527|ENST00000648509|CARD14 MULTI-MSMS UPN47_class_I_Rep_3 4 485.78680419921875 2 485.787641 969.56073 -0.012146 -5.9005E-06 -1.1262 -0.00054711 -1.1384 -0.00055301 485.78751023054286 46.118 1.3655 49.362 48.963 50.328 3.2441 178 84 3 0 0 0 0.36392 1 9757 9757 10.074 0 1 398310 19637 3224 12345 12352 23397 23397 0.07473162680128098 KVNIFLHSP 9 Unmodified _KVNIFLHSP_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|107|3|sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|107|3|sense MSMS UPN48_class_I_Rep_3 7 527.8081665039062 2 527.805834 1053.59712 NaN NaN NaN NaN NaN NaN NaN 98.014 1 101.92 101.42 102.42 3.9022 0 0 0 0.39428 1 23223 23223 2.0598 0.40713 1 + 19638 23712 12346 12353 23398 23398 0.07246039576853036 KVNKAAVF 8 Unmodified _KVNKAAVF_ 0 0 0 nc|ENSG00000135040|Q5VZE5-2|NAA35;ENSG00000135040|ENST00000361671|NAA35 nc|ENSG00000135040|Q5VZE5-2|NAA35 nc|ENSG00000135040|Q5VZE5-2|NAA35 MULTI-MSMS UPN47_class_I_Rep_2 3 438.7693786621094 2 438.76872 875.522887 -0.12206 -5.3556E-05 1.8274 0.00080181 1.7054 0.00074826 438.76946865291194 115.09 0.118 118.59 118.53 118.65 3.5039 11 9 2 0 0 0 0.82752 1 28061 28061 2.5775 0 1 337750 19639 2882 12347 12354 23399 23399 0.08014696485327022 KVNKAYEF 8 Unmodified _KVNKAYEF_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MSMS UPN48_class_I_Rep_2 6 499.7687683105469 2 499.768917 997.523281 NaN NaN NaN NaN NaN NaN NaN 61.499 1 64.973 64.473 65.473 3.4738 0 0 0 0.36705 1 13666 13666 18.135 1.1927 1 19640 3075 12348 12355 23400 23400 0.024420714145207967 KVNSFQVSLI 10 Unmodified _KVNSFQVSLI_ 0 0 0 REV__L1MB2_dup1222|chr2:222935761-222936595:-|1.2189915904506683|0.3329222188226538|1.87|150.0|49|3|anti-sense REV__L1MB2_dup1222|chr2:222935761-222936595:-|1.2189915904506683|0.3329222188226538|1.87|150.0|49|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.8305053710938 2 567.829506 1133.64446 0.22696 0.00012888 0.25193 0.00014305 0.4789 0.00027193 567.8296424692712 45.433 0.90908 48.786 48.406 49.315 3.3534 92 54 2 0 0 0 0.55448 1 9719 9719 4.897 0 1 194200 + 19641 25692 12349 12356 23401 23401 0.0829827405721062 KVPELSLFR 9 Unmodified _KVPELSLFR_ 0 0 0 REV__ENSG00000110092|ENST00000227507|CCND1 REV__ENSG00000110092|ENST00000227507|CCND1 MSMS UPN48_class_I_Rep_2 6 544.8250122070312 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 89.267 1 93.005 92.505 93.505 3.7379 0 0 0 0.39518 1 21261 21261 1.8442 0.19162 1 + 19642 18427 12350 12357 23402 23402 0.09866595265384603 KVPGLRSGVGG 11 Unmodified _KVPGLRSGVGG_ 0 0 0 REV__ENST00000586018.5_1_19:19657205-19657403:+|nuORF REV__ENST00000586018.5_1_19:19657205-19657403:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.8073120117188 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 88.517 1 91.91 91.41 92.41 3.3931 0 0 0 0.38417 1 22201 22201 2.7352 0 1 + 19643 23144 12351 12358 23403 23403 0.08640253945782206 KVPGTSSLS 9 Unmodified _KVPGTSSLS_ 0 0 0 MSTB_dup75|chr1:31041451-31041862:+|2.224212286496336|0.011176587289122|7.64|151.0|3|1|sense MSTB_dup75|chr1:31041451-31041862:+|2.224212286496336|0.011176587289122|7.64|151.0|3|1|sense MSTB_dup75|chr1:31041451-31041862:+|2.224212286496336|0.011176587289122|7.64|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 438.31365966796875 2 438.245275 874.475997 0.18225 7.9869E-05 -1.57 -0.00068803 -1.3877 -0.00060816 438.2444572820548 78.62 0.092873 82.241 82.205 82.298 3.6216 13 10 2 0 0 0 0.12444 1 18618 18618 2.0598 0 1 37953 19644 16571 12352 12359 23404 23404 0.03373792143531773 KVPHPLAA 8 Unmodified _KVPHPLAA_ 0 0 0 L1MB7_dup15650|chr12:25236787-25237396:+|2.3001487974327754|0.1322550953076719|4.12|151.0|24|1|anti-sense L1MB7_dup15650|chr12:25236787-25237396:+|2.3001487974327754|0.1322550953076719|4.12|151.0|24|1|anti-sense L1MB7_dup15650|chr12:25236787-25237396:+|2.3001487974327754|0.1322550953076719|4.12|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_1 2 416.7562255859375 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 112.58 1 116.16 115.66 116.66 3.572 0 0 0 0.40738 1 27756 27756 0.79363 0.79363 1 19645 10722 12353 12360 23405 23405 0.07418427313837128 KVPKELSI 8 Unmodified _KVPKELSI_ 0 0 0 REV__L1M4_dup17633|chr16:68103510-68104653:-|1.40894911249289|0.0100986667388372|7.12|151.0|71|3|anti-sense REV__L1M4_dup17633|chr16:68103510-68104653:-|1.40894911249289|0.0100986667388372|7.12|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.2899169921875 2 457.289485 912.564418 0.21726 9.9352E-05 -0.26989 -0.00012342 -0.052626 -2.4065E-05 457.28931971524514 79.055 0.55103 82.697 82.327 82.878 3.6423 123 66 2 0 0 0 0.82752 1 18771 18771 13.906 0.86358 1 247090 + 19646 24400 12354 12361 23406 23406 0.10463832454001931 KVPLAMLAVL 10 Unmodified _KVPLAMLAVL_ 0 0 0 Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 527.8400268554688 2 527.838288 1053.66202 NaN NaN NaN NaN NaN NaN NaN 89.182 1 92.634 92.134 93.134 3.4525 0 0 0 0.53105 1 22161 22161 1.6526 0 1 19647 33301 12355 12362 23407 23407 0.13733898058490013 KVPLAMLAVL 10 Unmodified _KVPLAMLAVL_ 0 0 0 Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 527.8396606445312 2 527.838288 1053.66202 NaN NaN NaN NaN NaN NaN NaN 93.598 1 97.067 96.567 97.567 3.4687 0 0 0 0.53105 1 23092 23092 1.6526 0.85899 1 19648 33301 12355 12362 23408 23408 0.13733898058490013 KVPLAMLAVL 10 Unmodified _KVPLAMLAVL_ 0 0 0 Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 527.839111328125 2 527.838288 1053.66202 NaN NaN NaN NaN NaN NaN NaN 88.933 1 92.326 91.826 92.826 3.3931 0 0 0 0.53105 1 22304 22304 1.6526 0.85899 1 19649 33301 12355 12362 23409 23409 0.13733898058490013 KVPLARRYKY 10 Unmodified _KVPLARRYKY_ 0 0 0 L1M4c_dup3139|chr19:27786805-27787844:+|1.143552475038651|0.1103935160765923|3.37|151.0|27|3|sense L1M4c_dup3139|chr19:27786805-27787844:+|1.143552475038651|0.1103935160765923|3.37|151.0|27|3|sense L1M4c_dup3139|chr19:27786805-27787844:+|1.143552475038651|0.1103935160765923|3.37|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 647.393310546875 2 647.393139 1292.77173 NaN NaN NaN NaN NaN NaN NaN 75.265 1 75.265 74.765 75.765 0 0 0 0 0.53105 1 17490 17490 0.40072 0 1 19650 9061 12356 12363 23410 23410 0.1370503972204915 KVPPCPRN 8 Unmodified _KVPPCPRN_ 0 0 0 nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 nc|ENSG00000090376|Q9Y616-2|IRAK3 MSMS UPN48_class_I_Rep_3 7 455.75048828125 2 455.750005 909.485456 NaN NaN NaN NaN NaN NaN NaN 23.63 1 27.399 26.899 27.899 3.769 0 0 0 0.40746 1 2620 2620 0.69038 0 1 19651 1348 12357 12364 23411 23411 0.02709281948057196 KVPPKLKR 8 Unmodified _KVPPKLKR_ 0 0 0 REV__L1MEd_dup16093|chr12:50125359-50125805:-|1.3417715285963885|0.1760862292456206|2.93|151.0|3|1|sense REV__L1MEd_dup16093|chr12:50125359-50125805:-|1.3417715285963885|0.1760862292456206|2.93|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 482.7955627441406 2 483.334562 964.65457 0.18187 8.7902E-05 0.29409 0.00014214 0.47596 0.00023005 483.3344494712318 108.94 0.34579 112.47 112.36 112.7 3.5382 65 38 3 0 0 0 0.72333 1 26768 26768 0 0 1 4356500 + 19652 28543 12358 12365 23412 23412 0.17082926573084478 KVPPVSLH 8 Unmodified _KVPPVSLH_ 0 0 0 ENST00000593069.1_2_19:56159415-56160398:+|nuORF ENST00000593069.1_2_19:56159415-56160398:+|nuORF ENST00000593069.1_2_19:56159415-56160398:+|nuORF MSMS UPN46_class_I_Rep_3 1 438.769287109375 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 26.162 1 26.162 25.662 26.662 0 0 0 0 0.40604 1 3698 3698 2.5775 0 1 19653 7640 12359 12366 23413 23413 0.0801469648533839 KVPRINMFN 9 Unmodified _KVPRINMFN_ 0 0 0 REV__ENSG00000111331|ENST00000228928|OAS3 REV__ENSG00000111331|ENST00000228928|OAS3 MSMS UPN48_class_I_Rep_1 5 559.8093872070312 2 559.810593 1117.60663 NaN NaN NaN NaN NaN NaN NaN 39.01 1 42.515 42.015 43.015 3.5048 0 0 0 0.38639 1 6834 6834 3.9444 0.3479 1 + 19654 18453 12360 12367 23414 23414 0.05253484590730295 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN46_class_I_Rep_3 1 469.32684326171875 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 55.668 1 55.668 55.168 56.168 0 0 0 0 0.4029 1 12104 12104 0 0 1 + 19655 21484 12361 12368 23415 23415 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_1 5 469.3280029296875 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 12.549 1 16.061 15.561 16.561 3.5124 0 0 0 0.4029 1 92 92 0 0 1 + 19656 21484 12361 12368 23416 23416 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_2 6 469.32818603515625 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 13.173 1 16.828 16.328 17.328 3.6549 0 0 0 0.4029 1 211 211 0 0 1 + 19657 21484 12361 12368 23417 23417 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_2 6 469.3280334472656 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 13.606 1 17.261 16.761 17.761 3.6549 0 0 0 0.4029 1 291 291 0 0 1 + 19658 21484 12361 12368 23418 23418 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.3281555175781 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 14.301 1 17.835 17.335 18.335 3.5341 0 0 0 0.4029 1 400 400 0 0 1 + 19659 21484 12361 12368 23419 23419 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.3280944824219 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 14.815 1 18.349 17.849 18.849 3.5341 0 0 0 0.4029 1 488 488 0 0 1 + 19660 21484 12361 12368 23420 23420 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.328125 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 14.945 1 18.484 17.984 18.984 3.5392 0 0 0 0.4029 1 511 511 0 0 1 + 19661 21484 12361 12368 23421 23421 0.1663358624743978 KVPVIGVIL 9 Unmodified _KVPVIGVIL_ 0 0 0 REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF REV__ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.32818603515625 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 15.08 1 18.62 18.12 19.12 3.5392 0 0 0 0.4029 1 537 537 0 0 1 + 19662 21484 12361 12368 23422 23422 0.1663358624743978 KVPVTVRNP 9 Unmodified _KVPVTVRNP_ 0 0 0 REV__nc|ENSG00000158220|A0FGR9-2|ESYT3 REV__nc|ENSG00000158220|A0FGR9-2|ESYT3 MSMS UPN48_class_I_Rep_1 5 505.7608337402344 2 505.311284 1008.60801 NaN NaN NaN NaN NaN NaN NaN 54.357 1 57.871 57.371 58.371 3.5143 0 0 0 0.39598 1 11501 11501 1.6526 0.96225 1 + 19663 19840 12362 12369 23423 23423 0.10405441951127159 KVQMVKPL 8 Unmodified _KVQMVKPL_ 0 0 0 REV__ENST00000484386.1_1_15:44097294-44102132:-|nuORF REV__ENST00000484386.1_1_15:44097294-44102132:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7959289550781 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 33.265 1 36.54 36.04 37.04 3.2748 0 0 0 0.40604 1 5908 5908 2.5775 0 1 + 19664 19331 12363 12370 23424 23424 0.10008482818807352 KVQMVKPL 8 Unmodified _KVQMVKPL_ 0 0 0 REV__ENST00000484386.1_1_15:44097294-44102132:-|nuORF REV__ENST00000484386.1_1_15:44097294-44102132:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 42.552 1 45.792 45.292 46.292 3.2394 0 0 0 0.40604 1 8742 8742 2.5775 0 1 + 19665 19331 12363 12370 23425 23425 0.10008482818807352 KVQPGSKKSP 10 Unmodified _KVQPGSKKSP_ 0 0 0 REV__ENSG00000164129|ENST00000338566|NPY5R REV__ENSG00000164129|ENST00000338566|NPY5R MSMS UPN47_class_I_Rep_2 3 528.3137817382812 2 528.314023 1054.61349 NaN NaN NaN NaN NaN NaN NaN 89.686 1 93.144 92.644 93.644 3.4571 0 0 0 0.53105 1 22277 22277 1.6526 0 1 + 19666 20038 12364 12371 23426 23426 0.08837120742964544 KVQVINAA 8 Unmodified _KVQVINAA_ 0 0 0 REV__nc|ENSG00000114268|Q16877-2|PFKFB4 REV__nc|ENSG00000114268|Q16877-2|PFKFB4 MSMS UPN46_class_I_Rep_3 1 421.7580871582031 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 13.244 1 13.244 12.744 13.744 0 0 0 0 0.40625 1 334 334 2.3027 0 1 + 19667 18523 12365 12372 23427 23427 0.07506106105643084 KVRCLYVFIK 10 Unmodified _KVRCLYVFIK_ 0 0 0 REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|17|2|sense REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 423.589111328125 3 423.589771 1267.74748 -0.51503 -0.00021816 -0.503 -0.00021306 -1.018 -0.00043122 423.5894154219473 12.836 0.22335 16.286 16.204 16.428 3.45 35 18 3 0 0 0 0.56333 1 173 173 1.7423 1.1791 1 56340 + 19668 25874 12366 12373 23428 23428 0.12432063244114033 KVRCLYVFIK 10 Unmodified _KVRCLYVFIK_ 0 0 0 REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|17|2|sense REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|17|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 423.589771 1267.74748 -0.91686 -0.00038837 -0.30685 -0.00012998 -1.2237 -0.00051835 423.58961823059417 12.855 0.19672 16.243 16.18 16.377 3.388 -0.02139 -0.00019375 NaN 1.7423 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 54235 + 19669 25874 12366 12373 0.12432063244114033 KVRCLYVFIK 10 Unmodified _KVRCLYVFIK_ 0 0 0 REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|17|2|sense REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|17|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 423.589771 1267.74748 -1.4523 -0.00061519 0.2387 0.00010111 -1.2136 -0.00051408 423.5897000296955 12.89 0.17513 16.264 16.191 16.366 3.3734 -0.00067374 0.00049951 NaN 1.7423 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 48903 + 19670 25874 12366 12373 0.12432063244114033 KVRFHGRK 8 Unmodified _KVRFHGRK_ 0 0 0 ENSG00000171189|ENST00000327783|GRIK1 ENSG00000171189|ENST00000327783|GRIK1 ENSG00000171189|ENST00000327783|GRIK1 MSMS UPN47_class_I_Rep_1 2 514.31689453125 2 514.317235 1026.61992 NaN NaN NaN NaN NaN NaN NaN 28.363 1 32.129 31.629 32.629 3.7662 0 0 0 0.40625 1 4358 4358 2.3027 0 1 19671 4512 12367 12374 23429 23429 0.1076710348497727 KVRFHGRK 8 Unmodified _KVRFHGRK_ 0 0 0 ENSG00000171189|ENST00000327783|GRIK1 ENSG00000171189|ENST00000327783|GRIK1 ENSG00000171189|ENST00000327783|GRIK1 MSMS UPN47_class_I_Rep_2 3 514.3170776367188 2 514.317235 1026.61992 NaN NaN NaN NaN NaN NaN NaN 28.605 1 32.103 31.603 32.603 3.4986 0 0 0 0.40625 1 4461 4461 2.3027 0 1 19672 4512 12367 12374 23430 23430 0.1076710348497727 KVRFKPPV 8 Unmodified _KVRFKPPV_ 0 0 0 REV__ENST00000511048.1_1_5:139028565-139059991:+|nuORF REV__ENST00000511048.1_1_5:139028565-139059991:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 485.8116760253906 2 485.813462 969.612371 0.14333 6.9632E-05 -2.7011 -0.0013123 -2.5578 -0.0012426 485.81151509131354 68.522 0.19024 71.72 71.61 71.8 3.1977 20 13 2 0 0 0 0.82752 1 16629 16629 2.5775 0 1 287170 + 19673 22735 12368 12375 23431 23431 0.12634951164693575 KVRHKLIFFQ 10 Unmodified _KVRHKLIFFQ_ 0 0 0 L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|41|3|anti-sense L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|41|3|anti-sense L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|41|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.271240234375 3 439.27143 1314.79246 0.0503 2.2095E-05 -0.063112 -2.7723E-05 -0.012812 -5.6277E-06 439.27130879901523 35.371 0.5385 39.043 38.82 39.358 3.6721 88 55 3 0 0 0 0.56433 1 5717 5717 0.77653 0 1 142710 19674 9200 12369 12376 23432 23432 0.14765630101669558 KVRIKRKKIF 10 Unmodified _KVRIKRKKIF_ 0 0 0 Tigger3b_dup5672|chr16:84746391-84747030:-|1.4008565771016783|0.1355922965377668|3.37|151.0|8|2|sense Tigger3b_dup5672|chr16:84746391-84747030:-|1.4008565771016783|0.1355922965377668|3.37|151.0|8|2|sense Tigger3b_dup5672|chr16:84746391-84747030:-|1.4008565771016783|0.1355922965377668|3.37|151.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 439.3165283203125 3 439.306475 1314.89759 NaN NaN NaN NaN NaN NaN NaN 110.12 1 113.79 113.29 114.29 3.669 0 0 0 0.53105 1 26214 26214 0.15932 0.01943 1 19675 33402 12370 12377 23433 23433 0.2527417129811056 KVRIMRIEI 9 Unmodified _KVRIMRIEI_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.3652954101562 2 579.362993 1156.71143 0.49204 0.00028507 0.85658 0.00049627 1.3486 0.00078134 579.3643605084915 109.29 0.53153 112.89 112.77 113.3 3.6046 137 66 3 0 0 0 0.41259 4 26979 26979;27010;27035;27045 7.2892 3.3448 1 3291700 + 19676 28540 12371 12378 23434;23435;23436;23437 23434 0.13934606067300592 KVRIMRIEI 9 Unmodified _KVRIMRIEI_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 579.351806640625 2 579.362993 1156.71143 0.63491 0.00036785 0.45208 0.00026192 1.087 0.00062977 579.3638937216281 109.29 0.45705 112.82 112.68 113.13 3.5307 129 61 3 0 0 0 0.41259 1 26668 26668 7.2892 2.96 1 2607000 + 19677 28540 12371 12378 23438 23438 0.13934606067300592 KVRIMRIEI 9 Unmodified _KVRIMRIEI_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.3538208007812 2 579.362993 1156.71143 0.50628 0.00029332 1.9264 0.0011161 2.4326 0.0014094 579.364992934907 109.31 0.5169 112.85 112.71 113.23 3.5347 132 69 3 0 0 0 0.41259 1 26935 26935 7.2892 2.96 1 3873100 + 19678 28540 12371 12378 23439 23439 0.13934606067300592 KVRIMRIEI 9 Unmodified _KVRIMRIEI_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 579.3527221679688 2 579.362993 1156.71143 NaN NaN NaN NaN NaN NaN NaN 109.63 1 113.3 112.8 113.8 3.6715 0 0 0 0.36505 1 26104 26104 7.2892 3.6927 1 + 19679 28540 12371 12378 23440 23440 0.13934606067300592 KVRIMRIEI 9 Unmodified _KVRIMRIEI_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.3654174804688 2 579.362993 1156.71143 0.48555 0.00028131 1.1359 0.00065808 1.6214 0.00093939 579.3643226227822 109.24 0.40254 112.91 112.8 113.2 3.6751 123 54 3 0 0 0 0.41259 1 26006 26006 7.2892 1.9923 1 3072300 + 19680 28540 12371 12378 23441 23441 0.13934606067300592 KVRKKAKKAKK 11 Unmodified _KVRKKAKKAKK_ 0 0 0 ENST00000494833.1_1_22:50214627-50216774:-|nuORF;ENSG00000100425.18,BRD1,chr22,-,I9.1,49794295,49797804|56|8.93|2|intron;nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1 ENST00000494833.1_1_22:50214627-50216774:-|nuORF ENST00000494833.1_1_22:50214627-50216774:-|nuORF MSMS UPN47_class_I_Rep_2 3 438.3138732910156 3 438.313629 1311.91906 NaN NaN NaN NaN NaN NaN NaN 70.027 1 73.303 72.803 73.803 3.2761 0 0 0 0.38417 1 17038 17038 0.094841 0 1 19681 1504 12372 12379 23442 23442 0.27557556326814847 KVRKKAKKAKK 11 Unmodified _KVRKKAKKAKK_ 0 0 0 ENST00000494833.1_1_22:50214627-50216774:-|nuORF;ENSG00000100425.18,BRD1,chr22,-,I9.1,49794295,49797804|56|8.93|2|intron;nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1 ENST00000494833.1_1_22:50214627-50216774:-|nuORF ENST00000494833.1_1_22:50214627-50216774:-|nuORF MSMS UPN48_class_I_Rep_2 6 438.2684326171875 3 438.313629 1311.91906 NaN NaN NaN NaN NaN NaN NaN 104.71 1 108.4 107.9 108.9 3.6901 0 0 0 0.38417 1 24782 24782 0.094841 0 1 19682 1504 12372 12379 23443 23443 0.27557556326814847 KVRKKVKGI 9 Unmodified _KVRKKVKGI_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN47_class_I_Rep_3 4 528.3722534179688 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.81 1 113.35 112.85 113.85 3.5347 0 0 0 0.39428 1 26981 26981 2.0598 1.4583 1 19683 1578 12373 12380 23444 23444 0.2087057352721331 KVRKKVKGI 9 Unmodified _KVRKKVKGI_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN48_class_I_Rep_1 5 528.374267578125 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.48 1 113.11 112.61 113.61 3.6321 0 0 0 0.39428 1 26589 26589 2.0598 0 1 19684 1578 12373 12380 23445 23445 0.2087057352721331 KVRKKVKGI 9 Unmodified _KVRKKVKGI_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN48_class_I_Rep_1 5 528.3735961914062 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.61 1 113.24 112.74 113.74 3.6321 0 0 0 0.39428 1 26624 26624 2.0598 0 1 19685 1578 12373 12380 23446 23446 0.2087057352721331 KVRKKVKGI 9 Unmodified _KVRKKVKGI_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN48_class_I_Rep_1 5 528.371826171875 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.72 1 113.36 112.86 113.86 3.6326 0 0 0 0.39428 1 26652 26652 2.0598 0 1 19686 1578 12373 12380 23447 23447 0.2087057352721331 KVRKKVKGI 9 Unmodified _KVRKKVKGI_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN48_class_I_Rep_1 5 528.3734741210938 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.74 1 113.38 112.88 113.88 3.6326 0 0 0 0.39428 1 26656 26656 2.0598 0 1 19687 1578 12373 12380 23448 23448 0.2087057352721331 KVRKKVKGI 9 Unmodified _KVRKKVKGI_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN48_class_I_Rep_1 5 528.3717041015625 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.86 1 113.49 112.99 113.99 3.6326 0 0 0 0.39428 1 26684 26684 2.0598 0 1 19688 1578 12373 12380 23449 23449 0.2087057352721331 KVRLHVKHQQ 10 Unmodified _KVRLHVKHQQ_ 0 0 0 ENSG00000107929.15,LARP4B,chr10,-,I3.1,903344,903429|51|13.37|1|intron;ENSG00000107929.15,LARP4B,chr10,-,I2.1,903516,924382|31|16.12|1|intron ENSG00000107929.15,LARP4B,chr10,-,I3.1,903344,903429|51|13.37|1|intron ENSG00000107929.15,LARP4B,chr10,-,I3.1,903344,903429|51|13.37|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 636.8870849609375 2 636.886013 1271.75747 0.61591 0.00039227 0.75407 0.00048025 1.37 0.00087252 636.886937877989 36.451 0.088406 36.451 36.378 36.467 0 9 6 2 0 0 0 0.56486 1 6747 6747 0.40072 0 1 85932 19689 1842 12374 12381 23450 23450 0.13246387293725093 KVRLLRLR 8 Unmodified _KVRLLRLR_ 0 0 0 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 MSMS UPN47_class_I_Rep_2 3 527.8390502929688 2 527.37201 1052.72947 NaN NaN NaN NaN NaN NaN NaN 93.923 1 97.395 96.895 97.895 3.472 0 0 0 0.40738 1 23166 23166 0.79363 0 1 19690 4954 12375 12382 23451 23451 0.2052110910428837 KVRQHRPRKG 10 Unmodified _KVRQHRPRKG_ 0 0 0 REV__ENST00000484936.5_1_2:99342931-99343325:-|nuORF REV__ENST00000484936.5_1_2:99342931-99343325:-|nuORF MSMS UPN47_class_I_Rep_2 3 631.3887329101562 2 631.389254 1260.76395 NaN NaN NaN NaN NaN NaN NaN 86.17 1 89.603 89.103 90.103 3.4329 0 0 0 0.53105 1 21436 21436 1.6526 0.17072 1 + 19691 22178 12376 12383 23452 23452 0.14400325245082968 KVRQRSKKAK 10 Unmodified _KVRQRSKKAK_ 0 0 0 ENSG00000166292|ENST00000424486|TMEM100 ENSG00000166292|ENST00000424486|TMEM100 ENSG00000166292|ENST00000424486|TMEM100 MSMS UPN47_class_I_Rep_2 3 614.9029541015625 2 614.901663 1227.78877 NaN NaN NaN NaN NaN NaN NaN 33.906 1 37.346 36.846 37.846 3.4398 0 0 0 0.53105 1 6065 6065 0.35063 0 1 19692 4230 12377 12384 23453 23453 0.1839896032784054 KVRRLMGKSH 10 Unmodified _KVRRLMGKSH_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-SECPEP UPN47_class_I_Rep_1 2 606.3614501953125 2 606.361316 1210.70808 0.52932 0.00032096 -0.067175 -4.0732E-05 0.46214 0.00028022 606.8626409987187 109.16 0.36015 112.77 112.61 112.97 3.6046 61 35 3 0 0 0 0.84575 1 26887 26887 1.4819 0 1 4472200 19693 1943 12378 12385 23454 23454 0.11115356013283417 KVRRLMGKSH 10 Unmodified _KVRRLMGKSH_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-MATCH UPN48_class_I_Rep_1 5 2 606.361316 1210.70808 0.41776 0.00025331 0.057877 3.5095E-05 0.47563 0.00028841 606.3613113814239 109.21 0.046013 112.84 112.81 112.86 3.6321 0.037492 0.00012332 NaN 1.4819 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 578980 19694 1943 12378 12385 0.11115356013283417 KVRSAFRR 8 Unmodified _KVRSAFRR_ 0 0 0 ENST00000382247.5_1_4:17812117-17812297:-|nuORF ENST00000382247.5_1_4:17812117-17812297:-|nuORF ENST00000382247.5_1_4:17812117-17812297:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 509.7702941894531 2 510.314692 1018.61483 -0.27328 -0.00013946 -1.754 -0.00089509 -2.0273 -0.0010345 510.31359612970647 13.073 0.096384 16.53 16.484 16.581 3.457 8 6 2 0 0 0 0.72333 1 250 250 0.69038 0 1 11510 19695 6497 12379 12386 23455 23455 0.10626799622355065 KVRSLRLK 8 Unmodified _KVRSLRLK_ 0 0 0 REV__nc|ENSG00000132821|Q96N03-2|VSTM2L REV__nc|ENSG00000132821|Q96N03-2|VSTM2L MSMS UPN47_class_I_Rep_2 3 500.3421325683594 2 500.342918 998.671283 NaN NaN NaN NaN NaN NaN NaN 110.87 1 114.4 113.9 114.9 3.5271 0 0 0 0.40738 1 26991 26991 0.79363 0 1 + 19696 19035 12380 12387 23456 23456 0.1718942745901586 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS UPN48_class_I_Rep_2 6 544.8248901367188 2 544.824755 1087.63496 0.48446 0.00026395 0.29205 0.00015912 0.77651 0.00042306 544.824624621984 88.924 0.27611 92.662 92.553 92.829 3.7379 58 34 2 0 0 0 0.56309 1 21186 21186 1.6526 0.17072 1 93234 + 19697 20869 12381 12388 23457 23457 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS UPN48_class_I_Rep_2 6 544.824951171875 2 544.824755 1087.63496 0.48457 0.00026401 0.14585 7.9464E-05 0.63042 0.00034347 544.8246681078266 89.159 0.19376 92.897 92.814 93.008 3.7379 34 22 2 0 0 0 0.56309 1 21225 21225 1.6526 0.17072 1 127340 + 19698 20869 12381 12388 23458 23458 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MSMS UPN48_class_I_Rep_2 6 544.8241577148438 2 544.824755 1087.63496 NaN NaN NaN NaN NaN NaN NaN 88.146 1 91.874 91.374 92.374 3.7279 0 0 0 0.53105 1 20984 20984 1.6526 0.17072 1 + 19699 20869 12381 12388 23459 23459 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS UPN48_class_I_Rep_3 7 544.8244018554688 2 544.824755 1087.63496 0.50243 0.00027374 -0.18416 -0.00010034 0.31827 0.0001734 544.8245387563912 89.004 0.7051 92.833 92.292 92.997 3.8293 114 92 2 0 0 0 0.56309 2 21089 21089;21119 1.6526 0.17072 1 128460 + 19700 20869 12381 12388 23460;23461 23460 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS UPN48_class_I_Rep_3 7 544.8250732421875 2 544.824755 1087.63496 0.50077 0.00027283 -0.012332 -6.7189E-06 0.48843 0.00026611 544.8245406504792 89.731 0.4552 93.56 93.363 93.818 3.8293 86 58 2 0 0 0 0.56078 1 21343 21343 3.2813 1.4371 1 213160 + 19701 20869 12381 12388 23462 23462 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 544.824755 1087.63496 0.37993 0.00020699 -0.030534 -1.6635E-05 0.34939 0.00019036 544.8247486022075 92.884 0.1333 92.884 92.791 92.924 0 -0.027739 -9.0309E-05 NaN 1.6526 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 87417 + 19702 20869 12381 12388 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 544.824755 1087.63496 0.48446 0.00026395 0.29205 0.00015912 0.77651 0.00042306 544.824624621984 88.924 0.27611 92.662 92.553 92.829 3.7379 -0.085734 0.00037458 NaN 1.6526 58 34 2 NaN NaN NaN NaN 0 NaN NaN 0 93234 + 19703 20869 12381 12388 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 544.824755 1087.63496 0.48457 0.00026401 0.14585 7.9464E-05 0.63042 0.00034347 544.8246681078266 89.159 0.19376 92.897 92.814 93.008 3.7379 -0.014965 0.00010189 NaN 1.6526 34 22 2 NaN NaN NaN NaN 0 NaN NaN 0 127340 + 19704 20869 12381 12388 0.09464505771643417 KVRSQLSALS 10 Unmodified _KVRSQLSALS_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH UPN48_class_I_Rep_3 7 2 544.824755 1087.63496 0.50217 0.00027359 -0.20445 -0.00011139 0.29772 0.00016221 544.8245796938269 89.196 0.099823 93.025 92.982 93.082 3.8293 0.1132 -0.00027981 NaN 1.6526 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 124080 + 19705 20869 12381 12388 0.09464505771643417 KVRSSRPL 8 Unmodified _KVRSSRPL_ 0 0 0 AluSg_dup28683|chr16:1754492-1754784:+|1.2888519958983002|0.3768154835575893|1.77|151.0|4|2|sense AluSg_dup28683|chr16:1754492-1754784:+|1.2888519958983002|0.3768154835575893|1.77|151.0|4|2|sense AluSg_dup28683|chr16:1754492-1754784:+|1.2888519958983002|0.3768154835575893|1.77|151.0|4|2|sense MSMS UPN47_class_I_Rep_1 2 471.7951354980469 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 32.443 1 36.156 35.656 36.656 3.7131 0 0 0 0.40625 1 5585 5585 2.3027 0 1 19706 215 12382 12389 23463 23463 0.10392288636899139 KVRVAGRG 8 Unmodified _KVRVAGRG_ 0 0 0 REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|189|3|anti-sense REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|189|3|anti-sense MSMS UPN48_class_I_Rep_2 6 421.769287109375 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 85.986 1 89.692 89.192 90.192 3.7058 0 0 0 0.40625 1 20469 20469 2.3027 0 1 + 19707 23568 12383 12390 23464 23464 0.09751750293935402 KVRVQFHS 8 Unmodified _KVRVQFHS_ 0 0 0 L1PA16_dup10516|chr12:11720451-11721713:+|6.1817160544011065|0.0283819020081583|7.77|151.0|85|3|anti-sense;L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|110|3|anti-sense;L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|81|1|anti-sense;L1MB2_dup5934|chr12:25093900-25095859:-|1.5298225386994284|0.075536886194897|4.34|150.0|100|2|anti-sense;L1PA16_dup875|chr1:246254056-246255888:-|8.855395332371163|0.071939059892163|6.94|151.0|107|3|anti-sense L1PA16_dup10516|chr12:11720451-11721713:+|6.1817160544011065|0.0283819020081583|7.77|151.0|85|3|anti-sense L1PA16_dup10516|chr12:11720451-11721713:+|6.1817160544011065|0.0283819020081583|7.77|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7876892089844 2 500.787976 999.561398 NaN NaN NaN NaN NaN NaN NaN 82.134 1 85.471 84.971 85.971 3.337 0 0 0 0.40604 1 20579 20579 2.5775 0 1 19708 10250 12384 12391 23465 23465 0.061600021198501054 KVSGYKNQY 9 Unmodified _KVSGYKNQY_ 0 0 0 L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|57|2|sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|57|2|sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.782958984375 2 543.782556 1085.55056 0.36309 0.00019744 0.24524 0.00013336 0.60833 0.0003308 543.7826320428272 47.852 0.53787 51.093 51.03 51.568 3.2405 55 42 2 0 0 0 0.43153 1 10375 10375 6.2058 0 1 125570 19709 14161 12385 12392 23466 23466 0.01120554954900399 KVSGYKNQY 9 Unmodified _KVSGYKNQY_ 0 0 0 L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|57|2|sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|57|2|sense L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|57|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 544.2850341796875 2 543.782556 1085.55056 0.32496 0.00017671 -0.3971 -0.00021594 -0.072142 -3.923E-05 543.782409080446 47.326 0.49918 50.567 50.29 50.789 3.2414 54 32 2 0 0 0 0.12157 1 10120 10120 6.2058 0 1 115230 19710 14161 12385 12392 23467 23467 0.01120554954900399 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2900390625 2 570.290214 1138.56587 0.43516 0.00024817 -1.2058 -0.00068765 -0.77063 -0.00043948 570.2900011566674 72.957 0.21439 76.254 76.153 76.367 3.2971 32 17 3 0 0 0 0.35081 1 17912 17912 10.824 1.4765 1 68958 19711 13103 12386 12393 23468 23468 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2903442382812 2 570.290214 1138.56587 0.44237 0.00025228 -0.14993 -8.5506E-05 0.29243 0.00016677 570.2901850782062 73.686 1.6077 76.991 76.375 77.983 3.3048 459 154 5 0 0 0 0.18929 6 18091 18091;18129;18165;18234;18338;18378 21.747 10.824 1 7372000 19712 13103 12386 12393 23469;23470;23471;23472;23473;23474 23469 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2918701171875 2 570.290214 1138.56587 0.45164 0.00025756 2.5434 0.0014505 2.995 0.001708 570.7932189405841 74.683 0.12928 77.995 77.97 78.099 3.3127 24 16 2 0 0 0 0.42249 1 18417 18417 6.7232 1.4925 1 148030 19713 13103 12386 12393 23475 23475 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2904663085938 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.26948 3 18133 18133;18312;18348 15.847 10.824 1 5554300 19714 13103 12386 12393 23476;23477;23478 23476 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2913208007812 2 570.290214 1138.56587 0.45786 0.00026112 1.4446 0.00082385 1.9025 0.001085 570.2909293172149 74.957 0.35832 78.204 78.118 78.477 3.2464 42 37 2 0 0 0 0.35081 1 18568 18568 10.824 10.824 1 80301 19715 13103 12386 12393 23479 23479 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 570.2680053710938 2 570.290214 1138.56587 0.45279 0.00025822 -0.52389 -0.00029877 -0.071104 -4.055E-05 570.2897290699374 72.918 0.081085 76.145 76.092 76.173 3.2271 12 7 2 0 0 0 0.12099 1 17971 17971 6.7232 1.4925 1 47816 19716 13103 12386 12393 23480 23480 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 570.26708984375 2 570.290214 1138.56587 0.45786 0.00026112 1.4446 0.00082385 1.9025 0.001085 570.2909293172149 74.957 0.35832 78.204 78.118 78.477 3.2464 42 37 2 0 0 0 0.11705 1 18606 18606 10.824 10.824 1 80301 19717 13103 12386 12393 23481 23481 0.0021342175209611014 KVSHEITYY 9 Unmodified _KVSHEITYY_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|58|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 570.290214 1138.56587 0.45164 0.00025756 2.5434 0.0014505 2.995 0.001708 570.7932189405841 74.683 0.12928 77.995 77.97 78.099 3.3127 -0.10417 0.00092621 NaN 10.824 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 148030 19718 13103 12386 12393 0.0021342175209611014 KVSITTTK 8 Unmodified _KVSITTTK_ 0 0 0 REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|133|2|anti-sense REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|133|2|anti-sense MSMS UPN48_class_I_Rep_1 5 439.27728271484375 2 439.271293 876.528032 NaN NaN NaN NaN NaN NaN NaN 110.55 1 114.19 113.69 114.69 3.6326 0 0 0 0.40738 1 26836 26836 0.79363 0 1 + 19719 32436 12387 12394 23482 23482 0.08482955557258265 KVSKNLLY 8 Unmodified _KVSKNLLY_ 0 0 0 L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|174|1|anti-sense;L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|33|1|anti-sense;L1PA13_dup1280|chr3:52594183-52595088:-|5.142512852928319|0.0577149930964443|6.48|151.0|32|1|anti-sense;L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|142|1|anti-sense;L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|164|1|anti-sense;L1PA13_dup4515|chr9:5143959-5146332:-|2.252522966505171|0.0746144862134112|4.92|151.0|107|2|anti-sense;L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|101|1|anti-sense;L1PA13_dup2255|chr4:129009539-129012989:-|5.27796810394162|0.1113957280860784|5.57|151.0|222|3|anti-sense;L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|317|3|anti-sense;L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|296|3|anti-sense L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|174|1|anti-sense L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|174|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7950439453125 2 482.794935 963.575317 -0.07959 -3.8426E-05 1.1563 0.00055823 1.0767 0.00051981 482.7954900519837 25.807 0.043192 25.807 25.781 25.824 0 6 4 2 0 0 0 0.82752 1 3599 3599 2.5775 0 1 78629 19720 13689 12388 12395 23483 23483 0.09207234828272703 KVSKNLLY 8 Unmodified _KVSKNLLY_ 0 0 0 L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|174|1|anti-sense;L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|33|1|anti-sense;L1PA13_dup1280|chr3:52594183-52595088:-|5.142512852928319|0.0577149930964443|6.48|151.0|32|1|anti-sense;L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|142|1|anti-sense;L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|164|1|anti-sense;L1PA13_dup4515|chr9:5143959-5146332:-|2.252522966505171|0.0746144862134112|4.92|151.0|107|2|anti-sense;L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|101|1|anti-sense;L1PA13_dup2255|chr4:129009539-129012989:-|5.27796810394162|0.1113957280860784|5.57|151.0|222|3|anti-sense;L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|317|3|anti-sense;L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|296|3|anti-sense L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|174|1|anti-sense L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|174|1|anti-sense MSMS UPN46_class_I_Rep_3 1 482.79541015625 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 26.189 1 26.189 25.689 26.689 0 0 0 0 0.40404 1 3706 3706 5.2307 0 1 19721 13689 12388 12395 23484 23484 0.09207234828272703 KVSMSLYKI 9 Unmodified _KVSMSLYKI_ 0 0 0 L1ME2_dup5538|chr7:30590880-30592588:+|1.5284333028061534|0.348238396615789|2.13|151.0|46|3|sense L1ME2_dup5538|chr7:30590880-30592588:+|1.5284333028061534|0.348238396615789|2.13|151.0|46|3|sense L1ME2_dup5538|chr7:30590880-30592588:+|1.5284333028061534|0.348238396615789|2.13|151.0|46|3|sense MSMS UPN48_class_I_Rep_3 7 534.8095703125 2 534.809728 1067.6049 NaN NaN NaN NaN NaN NaN NaN 40.774 1 44.425 43.925 44.925 3.6509 0 0 0 0.32573 1 7291 7291 9.3831 0 1 19722 12507 12389 12396 23485 23485 0.07380430782109215 KVSSPDSL 8 Unmodified _KVSSPDSL_ 0 0 0 PRIMA4-int_dup59|chr2:168503323-168504128:-|1.035333695815164|0.0082305049779754|6.97|151.0|3|1|sense PRIMA4-int_dup59|chr2:168503323-168504128:-|1.035333695815164|0.0082305049779754|6.97|151.0|3|1|sense PRIMA4-int_dup59|chr2:168503323-168504128:-|1.035333695815164|0.0082305049779754|6.97|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 416.2275085449219 2 416.724175 831.433798 -0.44851 -0.0001869 -0.41421 -0.00017261 -0.86271 -0.00035951 416.72407742174954 34.903 0.56694 38.589 38.323 38.89 3.6859 55 43 2 0 0 0 0.72333 1 6314 6314 15.847 4.2069 1 77021 19723 16895 12390 12397 23486 23486 0.011338167351482298 KVSVLWEEV 9 Unmodified _KVSVLWEEV_ 0 0 0 nc|ENSG00000064201|Q96QS1-4|TSPAN32;ENST00000461200.5_1_11:2323274-2335767:+|nuORF nc|ENSG00000064201|Q96QS1-4|TSPAN32 nc|ENSG00000064201|Q96QS1-4|TSPAN32 MULTI-MSMS UPN47_class_I_Rep_2 3 544.8025512695312 2 544.802957 1087.59136 0.43881 0.00023906 -1.0487 -0.00057133 -0.60989 -0.00033227 544.8023759657614 76.718 0.023529 80.05 80.035 80.059 3.3315 4 2 2 0 0 0 0.41259 1 19001 19001 7.2892 2.5332 1 26367 19724 6858 12391 12398 23487 23487 0.05106896274492101 KVTAKRHK 8 Unmodified _KVTAKRHK_ 0 0 0 REV__Tigger3a_dup3185|chrX:74220178-74220508:+|3.287624329178408|0.1328237283855655|4.63|150.0|19|2|anti-sense REV__Tigger3a_dup3185|chrX:74220178-74220508:+|3.287624329178408|0.1328237283855655|4.63|150.0|19|2|anti-sense MSMS UPN47_class_I_Rep_2 3 483.9808654785156 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 100.69 1 104.2 103.7 104.7 3.5063 0 0 0 0.40604 1 24610 24610 2.5775 0.27475 1 + 19725 32715 12392 12399 23488 23488 0.12404281390831784 KVTIMKTLAHL 11 Unmodified _KVTIMKTLAHL_ 0 0 0 L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.8848876953125 2 627.883758 1253.75296 0.55811 0.00035043 -0.16532 -0.0001038 0.39278 0.00024662 627.8838443636937 103.85 0.2305 107.62 107.51 107.74 3.7627 43 36 2 0 0 0 0.63951 1 25547 25547 4.1895 1.1943 1 42059000 19726 13455 12393 12400 23489 23489 0.13623742035974828 KVTIMKTLAHL 11 Unmodified _KVTIMKTLAHL_ 0 0 0 L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 627.3826904296875 2 627.883758 1253.75296 0.55811 0.00035043 -0.16532 -0.0001038 0.39278 0.00024662 627.8838443636937 103.85 0.2305 107.62 107.51 107.74 3.7627 43 36 2 0 0 0 22.551 1 25513 25513 2.4985 2.4985 1 42059000 19727 13455 12393 12400 23490 23490 0.13623742035974828 KVTIMKTLAHL 11 Unmodified _KVTIMKTLAHL_ 0 0 0 L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense L1MEi_dup3497|chr10:76338610-76339041:+|1.5716281650872277|0.0049687775595588|8.31|149.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 627.3831787109375 2 627.883758 1253.75296 0.51251 0.0003218 0.060791 3.817E-05 0.5733 0.00035997 627.8842570991478 103.88 0.17781 107.4 107.32 107.49 3.5205 35 24 2 0 0 0 22.551 1 25503 25503 2.4985 0.84587 1 32018000 19728 13455 12393 12400 23491 23491 0.13623742035974828 KVTKSAQKAQ 10 Unmodified _KVTKSAQKAQ_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MSMS UPN47_class_I_Rep_2 3 544.8247680664062 2 544.824755 1087.63496 NaN NaN NaN NaN NaN NaN NaN 89.495 1 92.948 92.448 93.448 3.4525 0 0 0 0.53105 1 22235 22235 3.5965 0 1 19729 3732 12394 12401 23492 23492 0.09464505771643417 KVTKSAQKAQ 10 Unmodified _KVTKSAQKAQ_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000359165.5_1_12:19609181-19609565:-|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN48_class_I_Rep_3 7 544.8250122070312 2 544.824755 1087.63496 0.50077 0.00027283 -0.012332 -6.7189E-06 0.48843 0.00026611 544.8245406504792 89.731 0.4552 93.56 93.363 93.818 3.8293 86 58 2 0 0 0 0.56309 1 21300 21300 1.6526 0 1 213160 19730 3732 12394 12401 23493 23493 0.09464505771643417 KVTKSKYN 8 Unmodified _KVTKSKYN_ 0 0 0 REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|53|2|sense REV__L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|53|2|sense MSMS UPN48_class_I_Rep_2 6 483.9809265136719 2 484.282192 966.549831 NaN NaN NaN NaN NaN NaN NaN 83.122 1 86.804 86.304 87.304 3.6814 0 0 0 0.40625 1 19747 19747 2.3027 0 1 + 19731 24334 12395 12402 23494 23494 0.06521760305849966 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN46_class_I_Rep_3 1 639.843994140625 2 639.843676 1277.6728 0.74534 0.0004769 -0.090739 -5.8059E-05 0.6546 0.00041884 639.8434869664027 95.393 0.33565 95.393 95.086 95.422 0 86 31 3 0 0 0 0.48412 1 23145 23145 8.1555 0.54658 1 51236000 19732 5840 12396 12403 23495 23495 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN46_class_I_Rep_3 1 639.843994140625 2 639.843676 1277.6728 0.74551 0.00047701 -0.24413 -0.00015621 0.50138 0.00032081 639.8433984086935 95.502 0.40172 95.502 95.422 95.824 0 119 41 3 0 0 0 0.48412 2 23179 23179;23255 8.1555 0.54658 1 41897000 19733 5840 12396 12403 23496;23497 23496 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN46_class_I_Rep_3 1 639.843994140625 2 639.843676 1277.6728 0.74708 0.00047801 -1.423 -0.00091049 -0.6759 -0.00043247 639.8433240689162 102.89 0.3562 102.89 102.79 103.15 0 154 39 8 0 0 0 0.48412 1 25099 25099 8.1555 0.54658 1 38453000 19734 5840 12396 12403 23498 23498 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN47_class_I_Rep_1 2 639.84423828125 2 639.843676 1277.6728 0.56028 0.00035849 -0.45027 -0.0002881 0.11001 7.0387E-05 639.8435882091574 91.605 0.79584 95.311 94.906 95.701 3.7053 621 112 8 0 0 0 0.48412 1 22825 22825 8.1555 0.54658 1 35873000 19735 5840 12396 12403 23499 23499 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN47_class_I_Rep_2 3 639.8439331054688 2 639.843676 1277.6728 0.61026 0.00039047 -0.30523 -0.0001953 0.30504 0.00019518 639.8435387244677 91.656 0.79669 95.117 94.729 95.525 3.4613 584 117 7 0 0 0 0.48412 2 22631 22631;22653 8.1555 0.54658 1 27934000 19736 5840 12396 12403 23500;23501 23500 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN47_class_I_Rep_2 3 639.8442993164062 2 639.843676 1277.6728 0.63458 0.00040603 -0.18342 -0.00011736 0.45116 0.00028867 639.8434929286079 98.864 0.55855 102.35 102.01 102.57 3.4897 153 82 3 0 0 0 0.48412 1 24184 24184 8.1555 0.54658 1 5084000 19737 5840 12396 12403 23502 23502 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN47_class_I_Rep_3 4 639.8439331054688 2 639.843676 1277.6728 0.50832 0.00032525 -0.10548 -6.7489E-05 0.40284 0.00025776 639.8436310795774 91.7 0.79927 95.101 94.73 95.53 3.401 577 117 6 0 0 0 0.48412 2 22900 22900;22923 8.1555 0.54658 1 13750000 19738 5840 12396 12403 23503;23504 23503 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN48_class_I_Rep_1 5 639.8438110351562 2 639.843676 1277.6728 0.4381 0.00028032 -0.41773 -0.00026728 0.020374 1.3036E-05 639.8436434823143 91.386 0.9293 95.012 94.605 95.534 3.626 795 130 7 0 0 0 0.48412 4 21903 21903;21930;21959;22046 8.1555 0.54658 1 94926000 19739 5840 12396 12403 23505;23506;23507;23508 23505 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN48_class_I_Rep_2 6 639.8440551757812 2 639.843676 1277.6728 0.49959 0.00031966 -0.3495 -0.00022363 0.15009 9.6037E-05 639.8436236229853 91.326 0.91702 95.081 94.632 95.549 3.7554 786 133 7 0 0 0 0.48412 4 21673 21673;21700;21729;21788 8.1555 0.54658 1 96075000 19740 5840 12396 12403 23509;23510;23511;23512 23509 0.04506971966452511 KVTRQSPNSYV 11 Unmodified _KVTRQSPNSYV_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN48_class_I_Rep_3 7 639.8439331054688 2 639.843676 1277.6728 0.63416 0.00040577 -0.41862 -0.00026785 0.21554 0.00013791 639.8434989313007 98.469 0.78478 102.37 102.04 102.83 3.9022 550 107 7 0 0 0 0.48412 3 23314 23314;23343;23396 8.1555 0.54658 1 21208000 19741 5840 12396 12403 23513;23514;23515 23513 0.04506971966452511 KVVFFQSVKKV 11 Unmodified _KVVFFQSVKKV_ 0 0 0 L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|252|2|anti-sense L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|252|2|anti-sense L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|252|2|anti-sense MSMS UPN48_class_I_Rep_2 6 436.9400634765625 3 436.939458 1307.79654 NaN NaN NaN NaN NaN NaN NaN 45.202 1 48.96 48.46 49.46 3.7579 0 0 0 0.38417 1 8700 8700 2.6312 0 1 19742 14543 12397 12404 23516 23516 0.15495674804719783 KVVILDPK 8 Unmodified _KVVILDPK_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MSMS UPN48_class_I_Rep_1 5 456.3009338378906 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 37.926 1 41.431 40.931 41.931 3.5052 0 0 0 0.40659 1 6507 6507 1.8442 0.19162 1 19743 4440 12398 12405 23517 23517 0.12628422833643071 KVVILDPK 8 Unmodified _KVVILDPK_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MSMS UPN48_class_I_Rep_1 5 456.3011779785156 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 38.011 1 41.516 41.016 42.016 3.5052 0 0 0 0.40659 1 6530 6530 1.8442 1.2427 1 19744 4440 12398 12405 23518 23518 0.12628422833643071 KVVILDPK 8 Unmodified _KVVILDPK_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MSMS UPN48_class_I_Rep_1 5 456.3003845214844 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.408 1 43.912 43.412 44.412 3.5048 0 0 0 0.40659 1 7247 7247 1.8442 0.19162 1 19745 4440 12398 12405 23519 23519 0.12628422833643071 KVVILDPK 8 Unmodified _KVVILDPK_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MSMS UPN48_class_I_Rep_2 6 456.3009033203125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.823 1 51.559 51.059 52.059 3.7361 0 0 0 0.40659 1 9488 9488 1.8442 1.0506 1 19746 4440 12398 12405 23520 23520 0.12628422833643071 KVVILDPK 8 Unmodified _KVVILDPK_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MSMS UPN48_class_I_Rep_3 7 456.301513671875 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 39.991 1 43.642 43.142 44.142 3.6509 0 0 0 0.40659 1 7057 7057 1.8442 0.19162 1 19747 4440 12398 12405 23521 23521 0.12628422833643071 KVVILDPK 8 Unmodified _KVVILDPK_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MSMS UPN48_class_I_Rep_3 7 456.30078125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 46.799 1 50.435 49.935 50.935 3.6363 0 0 0 0.40659 1 9117 9117 1.8442 0.19162 1 19748 4440 12398 12405 23522 23522 0.12628422833643071 KVVKFTET 8 Unmodified _KVVKFTET_ 0 0 0 L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|39|3|sense L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|39|3|sense L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 476.2790222167969 2 476.279118 950.543683 NaN NaN NaN NaN NaN NaN NaN 25.866 1 29.361 28.861 29.861 3.4945 0 0 0 0.40746 1 3657 3657 0.69038 0 1 19749 10413 12399 12406 23523 23523 0.06643242074335376 KVVKLAFF 8 Unmodified _KVVKLAFF_ 0 0 0 L1ME3Cz_dup34|chr1:8402555-8402898:-|1.3761816451370812|0.0870781850312519|3.98|151.0|27|3|anti-sense L1ME3Cz_dup34|chr1:8402555-8402898:-|1.3761816451370812|0.0870781850312519|3.98|151.0|27|3|anti-sense L1ME3Cz_dup34|chr1:8402555-8402898:-|1.3761816451370812|0.0870781850312519|3.98|151.0|27|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3067321777344 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 74.255 1 74.255 73.755 74.755 0 0 0 0 0.40738 1 17223 17223 0.79363 0.79363 1 19750 12772 12400 12407 23524 23524 0.11805030558889484 KVVKRVVYRGS 11 Unmodified _KVVKRVVYRGS_ 0 0 0 REV__Charlie1a_dup5725|chr22:29975152-29975605:-|1.0202996891094072|0.1168829763865895|3.13|151.0|20|1|anti-sense REV__Charlie1a_dup5725|chr22:29975152-29975605:-|1.0202996891094072|0.1168829763865895|3.13|151.0|20|1|anti-sense MSMS UPN46_class_I_Rep_3 1 645.9026489257812 2 645.903871 1289.79319 NaN NaN NaN NaN NaN NaN NaN 108.39 1 108.39 107.89 108.89 0 0 0 0 0.33232 1 26503 26503 10.151 0.76745 1 + 19751 17346 12401 12408 23525 23525 0.159884247507307 KVVLCLDGDS 10 Unmodified _KVVLCLDGDS_ 0 0 0 REV__nc|ENSG00000164329|Q6PIY7-2|TENT2 REV__nc|ENSG00000164329|Q6PIY7-2|TENT2 MSMS UPN47_class_I_Rep_2 3 524.77197265625 2 524.7708 1047.52705 NaN NaN NaN NaN NaN NaN NaN 24.908 1 28.391 27.891 28.891 3.483 0 0 0 0.53105 1 3378 3378 3.2813 0.28607 1 + 19752 20056 12402 12409 23526 23526 0.005183731260558488 KVVMNIQESTY 11 Unmodified _KVVMNIQESTY_ 0 0 0 L1ME2z_dup6377|chr18:47879529-47880559:-|1.2401937028608787|0.0655812850616411|4.24|151.0|68|3|anti-sense L1ME2z_dup6377|chr18:47879529-47880559:-|1.2401937028608787|0.0655812850616411|4.24|151.0|68|3|anti-sense L1ME2z_dup6377|chr18:47879529-47880559:-|1.2401937028608787|0.0655812850616411|4.24|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_2 6 437.8924865722656 3 437.891956 1310.65404 NaN NaN NaN NaN NaN NaN NaN 60.43 1 63.909 63.409 64.409 3.4785 0 0 0 0.38417 1 13345 13345 1.3296 0.36737 1 19753 12575 12403 12410 23527 23527 0.011136742803728339 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN47_class_I_Rep_2 3 528.3726806640625 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.82 1 113.35 112.85 113.85 3.5307 0 0 0 0.40038 1 26755 26755 0.6015 0 1 19754 1628 12404 12411 23528 23528 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN47_class_I_Rep_2 3 528.372314453125 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 110.07 1 113.6 113.1 114.1 3.5307 0 0 0 0.40038 1 26810 26810 0.6015 0 1 19755 1628 12404 12411 23529 23529 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN47_class_I_Rep_3 4 528.3722534179688 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 110.02 1 113.55 113.05 114.05 3.5347 0 0 0 0.40038 1 27023 27023 0.6015 0 1 19756 1628 12404 12411 23530 23530 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN47_class_I_Rep_3 4 528.3724975585938 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 110.18 1 113.71 113.21 114.21 3.529 0 0 0 0.40038 1 27055 27055 0.6015 0 1 19757 1628 12404 12411 23531 23531 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN48_class_I_Rep_1 5 528.3733520507812 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.92 1 113.55 113.05 114.05 3.6326 0 0 0 0.40038 1 26699 26699 0.6015 0 1 19758 1628 12404 12411 23532 23532 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN48_class_I_Rep_1 5 528.3717041015625 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.99 1 113.62 113.12 114.12 3.6326 0 0 0 0.40038 1 26714 26714 0.6015 0 1 19759 1628 12404 12411 23533 23533 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN48_class_I_Rep_1 5 528.3733520507812 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 110.09 1 113.72 113.22 114.22 3.6326 0 0 0 0.40038 1 26735 26735 0.6015 0 1 19760 1628 12404 12411 23534 23534 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN48_class_I_Rep_1 5 528.37255859375 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 110.2 1 113.84 113.34 114.34 3.6326 0 0 0 0.40038 1 26757 26757 0.6015 0 1 19761 1628 12404 12411 23535 23535 0.20870573527190572 KVVRKLKGK 9 Unmodified _KVVRKLKGK_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MSMS UPN48_class_I_Rep_3 7 528.37158203125 2 528.374218 1054.73388 NaN NaN NaN NaN NaN NaN NaN 109.86 1 113.53 113.03 114.03 3.67 0 0 0 0.40038 1 26092 26092 0.6015 0 1 19762 1628 12404 12411 23536 23536 0.20870573527190572 KVVWVKQVLA 10 Unmodified _KVVWVKQVLA_ 0 0 0 ENST00000491936.5_1_1:25664838-25679420:+|nuORF ENST00000491936.5_1_1:25664838-25679420:+|nuORF ENST00000491936.5_1_1:25664838-25679420:+|nuORF MSMS UPN47_class_I_Rep_1 2 585.3067016601562 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 30.337 1 34.082 33.582 34.582 3.7449 0 0 0 0.53105 1 4947 4947 1.4819 0 1 19763 7075 12405 12412 23537 23537 0.15559734087514698 KVWCCPICMR 10 Unmodified _KVWCCPICMR_ 0 0 0 REV__L1PA5_dup1644|chr3:149946321-149947391:-|1.5602204035177678|0.0613927172568031|4.67|151.0|47|1|anti-sense REV__L1PA5_dup1644|chr3:149946321-149947391:-|1.5602204035177678|0.0613927172568031|4.67|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_3 4 619.7886962890625 2 619.786892 1237.55923 NaN NaN NaN NaN NaN NaN NaN 51.806 1 55.012 54.512 55.512 3.2055 0 0 0 0.53105 1 11560 11560 1.4819 0.15237 1 + 19764 29720 12406 12413 23538 23538 -0.05004577267800414 KVWDIFNV 8 Unmodified _KVWDIFNV_ 0 0 0 REV__ENSG00000212126|ENST00000506868|TAS2R50 REV__ENSG00000212126|ENST00000506868|TAS2R50 MSMS UPN48_class_I_Rep_2 6 510.779296875 2 510.779285 1019.54402 NaN NaN NaN NaN NaN NaN NaN 26.173 1 29.807 29.307 30.307 3.6332 0 0 0 0.4044 1 3298 3298 4.756 0 1 + 19765 21236 12407 12414 23539 23539 0.0350266179417531 KVWKSKVRTY 10 Unmodified _KVWKSKVRTY_ 0 0 0 REV__L1MA3_dup7162|chr13:72881739-72883458:+|1.7401585334142755|0.0261413256528271|6.06|151.0|38|3|sense REV__L1MA3_dup7162|chr13:72881739-72883458:+|1.7401585334142755|0.0261413256528271|6.06|151.0|38|3|sense MSMS UPN48_class_I_Rep_3 7 647.8848876953125 2 647.885147 1293.75574 NaN NaN NaN NaN NaN NaN NaN 72.705 1 76.242 75.742 76.742 3.5373 0 0 0 0.53105 1 16964 16964 1.4819 0 1 + 19766 25101 12408 12415 23540 23540 0.12061333485121395 KVWNFLKI 8 Unmodified _KVWNFLKI_ 0 0 0 THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|35|3|sense THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|35|3|sense THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|35|3|sense MSMS UPN47_class_I_Rep_3 4 524.3128051757812 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 44.412 1 47.656 47.156 48.156 3.2441 0 0 0 0.4044 1 9311 9311 4.756 1.4747 1 19767 32942 12409 12416 23541 23541 0.10623817961868554 KVWNGLKI 8 Unmodified _KVWNGLKI_ 0 0 0 REV__MER31A_dup706|chr8:127928026-127928470:+|1.0979571698923407|0.031923139211177|5.1|151.0|21|1|anti-sense REV__MER31A_dup706|chr8:127928026-127928470:+|1.0979571698923407|0.031923139211177|5.1|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_3 4 479.2955017089844 2 479.297645 956.580737 NaN NaN NaN NaN NaN NaN NaN 17.325 1 20.683 20.183 21.183 3.3581 0 0 0 0.40746 1 1249 1249 0.69038 0 1 + 19768 31256 12410 12417 23542 23542 0.10070958410744879 KVYENYPTY 9 Unmodified _KVYENYPTY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS UPN48_class_I_Rep_1 5 588.7822875976562 2 588.782222 1175.54989 0.44211 0.00026031 0.089061 5.2438E-05 0.53117 0.00031274 588.7821774771948 38.599 1.0959 42.104 41.717 42.813 3.5048 243 95 4 0 0 0 3.8699E-05 10 6687 6601;6613;6650;6687;6724;6763;6804;6843;6883;6924 155.95 102.12 1 1057700 19769 2488 12411 12418 23543;23544;23545;23546;23547;23548;23549;23550;23551;23552 23546 -0.030862844848115856 KVYENYPTY 9 Unmodified _KVYENYPTY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS UPN48_class_I_Rep_2 6 588.7823486328125 2 588.782222 1175.54989 0.44218 0.00026035 0.13834 8.1454E-05 0.58052 0.0003418 588.7822078020705 38.225 1.0957 41.942 41.611 42.707 3.7164 309 106 4 0 0 0 3.8699E-05 10 6659 6544;6548;6585;6625;6659;6696;6736;6772;6812;6848 155.95 102.12 1 1070700 19770 2488 12411 12418 23553;23554;23555;23556;23557;23558;23559;23560;23561;23562 23557 -0.030862844848115856 KVYENYPTY 9 Unmodified _KVYENYPTY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MSMS UPN48_class_I_Rep_2 6 588.7823486328125 2 588.782222 1175.54989 NaN NaN NaN NaN NaN NaN NaN 38.992 1 42.722 42.222 43.222 3.7297 0 0 0 0.3377 1 6866 6866 8.7454 2.0222 1 19771 2488 12411 12418 23563 23563 -0.030862844848115856 KVYENYPTY 9 Unmodified _KVYENYPTY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS UPN48_class_I_Rep_3 7 588.7822875976562 2 588.782222 1175.54989 0.41831 0.00024629 0.14565 8.5756E-05 0.56396 0.00033205 588.7822457491759 38.395 1.1509 42.054 41.615 42.766 3.6595 304 109 4 0 0 0 3.8699E-05 9 6561 6484;6522;6561;6596;6636;6673;6712;6769;6773 168.54 114.7 1 1141300 19772 2488 12411 12418 23564;23565;23566;23567;23568;23569;23570;23571;23572 23566 -0.030862844848115856 KVYGAALQF 9 Unmodified _KVYGAALQF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MULTI-MSMS UPN48_class_I_Rep_1 5 498.779541015625 2 498.779285 995.544017 0.19486 9.7194E-05 0.92408 0.00046091 1.1189 0.0005581 498.77888770725383 51.015 0.52636 54.54 54.24 54.766 3.5246 45 31 3 0 0 0 0.052902 2 10451 10451;10491 47.749 0 1 141730 19773 5470 12412 12419 23573;23574 23573 0.04606661794173306 KVYGAALQF 9 Unmodified _KVYGAALQF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MSMS UPN48_class_I_Rep_2 6 498.7796630859375 2 498.779285 995.544017 NaN NaN NaN NaN NaN NaN NaN 50.7 1 54.368 53.868 54.868 3.6679 0 0 0 0.10315 1 10376 10376 24.021 0 1 19774 5470 12412 12419 23575 23575 0.04606661794173306 KVYGAALQF 9 Unmodified _KVYGAALQF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MSMS UPN48_class_I_Rep_2 6 498.7792663574219 2 498.779285 995.544017 NaN NaN NaN NaN NaN NaN NaN 50.843 1 54.511 54.011 55.011 3.6679 0 0 0 0.04168 1 10420 10420 39.95 0 1 19775 5470 12412 12419 23576 23576 0.04606661794173306 KVYGAALQF 9 Unmodified _KVYGAALQF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MSMS UPN48_class_I_Rep_3 7 498.77960205078125 2 498.779285 995.544017 NaN NaN NaN NaN NaN NaN NaN 50.967 1 54.578 54.078 55.078 3.6105 0 0 0 0.078496 1 10396 10396 29.082 0 1 19776 5470 12412 12419 23577 23577 0.04606661794173306 KVYKPIHFKWF 11 Unmodified _KVYKPIHFKWF_ 0 0 0 REV__MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|207|2|anti-sense REV__MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|207|2|anti-sense MSMS UPN48_class_I_Rep_1 5 498.28582763671875 3 498.286969 1491.83908 NaN NaN NaN NaN NaN NaN NaN 21.834 1 25.387 24.887 25.887 3.5533 0 0 0 0.38417 1 2053 2053 1.3296 0 1 + 19777 31500 12413 12420 23578 23578 0.11283069932937906 KVYKTATIVF 10 Unmodified _KVYKTATIVF_ 0 0 0 ENST00000370689.6_1_1:84702140-84702209:+|nuORF ENST00000370689.6_1_1:84702140-84702209:+|nuORF ENST00000370689.6_1_1:84702140-84702209:+|nuORF MSMS UPN46_class_I_Rep_3 1 585.8373413085938 2 585.350074 1168.6856 NaN NaN NaN NaN NaN NaN NaN 102.62 1 102.62 102.12 103.12 0 0 0 0 0.53105 1 25045 25045 1.4819 0.8804 1 19778 6385 12414 12421 23579 23579 0.1080003509666767 KVYLKWVI 8 Unmodified _KVYLKWVI_ 0 0 0 L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|8|1|sense L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|8|1|sense L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 524.7349243164062 2 524.83132 1047.64809 NaN NaN NaN NaN NaN NaN NaN 113.8 1 117.37 116.87 117.87 3.572 0 0 0 0.40746 1 28096 28096 0.69038 0 1 19779 12499 12415 12422 23580 23580 0.12616988621721248 KVYNIQIRY 9 Unmodified _KVYNIQIRY_ 0 0 0 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 MULTI-MSMS UPN48_class_I_Rep_1 5 598.8427734375 2 598.842948 1195.67134 0.42171 0.00025254 -0.079253 -4.746E-05 0.34246 0.00020508 598.8428403118193 44.289 0.99836 47.802 47.352 48.35 3.5132 164 73 3 0 0 0 0.0054033 7 8384 8303;8343;8384;8424;8465;8506;8573 78.728 54.938 1 550340 19780 877 12416 12423 23581;23582;23583;23584;23585;23586;23587 23583 0.08133382668370359 KVYNIQIRY 9 Unmodified _KVYNIQIRY_ 0 0 0 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 MULTI-MSMS UPN48_class_I_Rep_2 6 598.8430786132812 2 598.842948 1195.67134 0.4093 0.00024511 0.012607 7.5495E-06 0.4219 0.00025265 598.8428580354383 43.982 0.91474 47.744 47.286 48.2 3.7617 175 68 3 0 0 0 0.015095 6 8290 8212;8251;8290;8332;8370;8410 103.35 74.859 1 832810 19781 877 12416 12423 23588;23589;23590;23591;23592;23593 23590 0.08133382668370359 KVYNIQIRY 9 Unmodified _KVYNIQIRY_ 0 0 0 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 MSMS UPN48_class_I_Rep_2 6 598.8435668945312 2 598.842948 1195.67134 NaN NaN NaN NaN NaN NaN NaN 44.368 1 48.13 47.63 48.63 3.7617 0 0 0 0.10941 1 8449 8449 22.736 16.013 1 19782 877 12416 12423 23594 23594 0.08133382668370359 KVYNIQIRY 9 Unmodified _KVYNIQIRY_ 0 0 0 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 MSMS UPN48_class_I_Rep_2 6 598.8434448242188 2 598.842948 1195.67134 NaN NaN NaN NaN NaN NaN NaN 44.545 1 48.307 47.807 48.807 3.7617 0 0 0 0.37476 1 8501 8501 6.7232 2.7788 1 19783 877 12416 12423 23595 23595 0.08133382668370359 KVYNIQIRY 9 Unmodified _KVYNIQIRY_ 0 0 0 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 ENSG00000043462|ENST00000046794|LCP2 MULTI-MSMS UPN48_class_I_Rep_3 7 598.8431396484375 2 598.842948 1195.67134 0.45117 0.00027018 -0.029001 -1.7367E-05 0.42216 0.00025281 598.842843530471 44.248 1.0348 47.885 47.308 48.343 3.6372 173 69 3 0 0 0 0.011285 7 8270 8188;8231;8270;8314;8355;8395;8454 69.105 49.848 1 740860 19784 877 12416 12423 23596;23597;23598;23599;23600;23601;23602 23598 0.08133382668370359 KVYVHIKG 8 Unmodified _KVYVHIKG_ 0 0 0 MER103C_dup7914|chr17:63716607-63716833:-|1.918815860356257|0.4440281986171449|2.11|151.0|14|3|anti-sense MER103C_dup7914|chr17:63716607-63716833:-|1.918815860356257|0.4440281986171449|2.11|151.0|14|3|anti-sense MER103C_dup7914|chr17:63716607-63716833:-|1.918815860356257|0.4440281986171449|2.11|151.0|14|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.2882995605469 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 107.25 1 110.94 110.44 111.44 3.6899 0 0 0 0.40404 1 25281 25281 5.2307 0 1 19785 15764 12417 12424 23603 23603 0.09150671893701201 KWARGIKFL 9 Unmodified _KWARGIKFL_ 0 0 0 REV__MER4E1_dup747|chr12:82725525-82726285:-|1.2008603294672118|0.0150246622433276|6.32|147.0|46|3|anti-sense REV__MER4E1_dup747|chr12:82725525-82726285:-|1.2008603294672118|0.0150246622433276|6.32|147.0|46|3|anti-sense MSMS UPN48_class_I_Rep_3 7 559.8460693359375 2 559.845294 1117.67603 NaN NaN NaN NaN NaN NaN NaN 95.472 1 99.381 98.881 99.881 3.9084 0 0 0 0.4007 1 22630 22630 0.52476 0 1 + 19786 31367 12418 12425 23604 23604 0.12190311601784742 KWCCVLHI 8 Unmodified _KWCCVLHI_ 0 0 0 L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 500.766357421875 2 501.256608 1000.49866 0.31972 0.00016026 0.27882 0.00013976 0.59854 0.00030002 501.2568058506844 68.114 0.72519 71.622 71.31 72.036 3.5077 81 68 2 0 0 0 0.72333 1 15682 15682 0.79363 0.79363 1 115220 19787 11744 12419 12426 23605 23605 -0.0015660326421311765 KWCCVLHI 8 Unmodified _KWCCVLHI_ 0 0 0 L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 501.256608 1000.49866 0.24926 0.00012494 0.40652 0.00020377 0.65578 0.00032871 501.2567235972803 68.288 0.24271 71.739 71.536 71.778 3.4517 0.067675 0.0001177 NaN 0.79363 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 115740 19788 11744 12419 12426 -0.0015660326421311765 KWCCVLHI 8 Unmodified _KWCCVLHI_ 0 0 0 L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense L1MC5a_dup4304|chr4:76138975-76139687:+|1.7214694581079162|0.1167480963107421|3.88|151.0|40|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 501.256608 1000.49866 0.30214 0.00015145 0.25166 0.00012615 0.5538 0.0002776 501.2567573696855 68.145 0.44975 71.654 71.386 71.836 3.5083 -0.018066 -3.7541E-05 NaN 0.79363 59 39 2 NaN NaN NaN NaN 0 NaN NaN 0 124810 19789 11744 12419 12426 -0.0015660326421311765 KWCHHVKNR 9 Unmodified _KWCHHVKNR_ 0 0 0 L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|44|2|sense L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|44|2|sense L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|44|2|sense MSMS UPN48_class_I_Rep_3 7 604.2730102539062 2 604.316909 1206.61926 NaN NaN NaN NaN NaN NaN NaN 32.891 1 36.581 36.081 37.081 3.6896 0 0 0 0.39428 1 5046 5046 2.0598 0 1 19790 10596 12420 12427 23606 23606 0.024219407736154608 KWCIRTKY 8 Unmodified _KWCIRTKY_ 0 0 0 REV__ENST00000535589.3_1_2:114648352-114674470:+|nuORF REV__ENST00000535589.3_1_2:114648352-114674470:+|nuORF MSMS UPN46_class_I_Rep_3 1 549.3380126953125 2 549.299862 1096.58517 NaN NaN NaN NaN NaN NaN NaN 35.105 1 35.105 34.605 35.605 0 0 0 0 0.40746 1 6351 6351 0.69038 0 1 + 19791 21575 12421 12428 23607 23607 0.04074099562012634 KWDIHMKK 8 Unmodified _KWDIHMKK_ 0 0 0 L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|22|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|22|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|22|1|sense MSMS UPN47_class_I_Rep_1 2 543.3009033203125 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 53.941 1 57.468 56.968 57.968 3.5278 0 0 0 0.40625 1 12127 12127 2.3027 0.24298 1 19792 9321 12422 12429 23608 23608 0.046260995620059475 KWFALHPW 8 Unmodified _KWFALHPW_ 0 0 0 L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|87|3|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|87|3|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|87|3|anti-sense MSMS UPN46_class_I_Rep_3 1 542.7904663085938 2 542.789987 1083.56542 NaN NaN NaN NaN NaN NaN NaN 105.86 1 105.86 105.36 106.36 0 0 0 0 0.40604 1 25819 25819 2.5775 0.27475 1 19793 9808 12423 12430 23609 23609 0.02698091613547149 KWFHGLGP 8 Unmodified _KWFHGLGP_ 0 0 0 THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|5|1|sense;THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|21|2|sense;THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|27|2|sense;THE1B-int_dup3734|chr14:67925571-67926503:-|1.258435925224744|0.0113820181902693|6.79|150.0|22|3|sense;THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|5|1|sense;THE1B-int_dup492|chr2:138523419-138525051:-|3.568406179185955|0.0137522018854403|8.02|151.0|25|2|sense;THE1B-int_dup2348|chr8:125369191-125370681:-|1.6031141811987784|0.1038413313965315|3.95|151.0|8|1|sense;THE1A-int_dup234|chr2:231748067-231749539:+|1.53795246236875|0.0258092791421057|5.9|151.0|36|3|sense;THE1B-int_dup3003|chr10:75831347-75832617:-|1.3383257480003994|0.0172059141850824|6.28|148.0|31|3|sense THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|5|1|sense THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 471.2545166015625 2 471.253237 940.491922 NaN NaN NaN NaN NaN NaN NaN 26.812 1 30.375 29.875 30.875 3.5629 0 0 0 0.40738 1 3353 3353 0.79363 0 1 19794 32865 12424 12431 23610 23610 0.019295431710929734 KWFLRVMK 8 Unmodified _KWFLRVMK_ 0 0 0 REV__L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|51|3|sense REV__L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|51|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.3297729492188 2 554.328422 1106.64229 0.39256 0.00021761 2.0996 0.0011639 2.4921 0.0013815 554.3293926484494 110.46 0.10751 114.13 114.12 114.22 3.67 20 11 3 0 0 0 0.82752 1 26211 26211 2.3027 0.4585 1 516540 + 19795 26685 12425 12432 23611 23611 0.09323566838384068 KWFSAYFL 8 Unmodified _KWFSAYFL_ 0 0 0 L1MC4_dup7191|chr5:14155184-14156718:-|1.8651724373266667|0.0393143498331801|5.57|150.0|88|3|anti-sense L1MC4_dup7191|chr5:14155184-14156718:-|1.8651724373266667|0.0393143498331801|5.57|150.0|88|3|anti-sense L1MC4_dup7191|chr5:14155184-14156718:-|1.8651724373266667|0.0393143498331801|5.57|150.0|88|3|anti-sense MSMS UPN48_class_I_Rep_1 5 531.27783203125 2 531.276378 1060.5382 NaN NaN NaN NaN NaN NaN NaN 44.715 1 48.228 47.728 48.728 3.5132 0 0 0 0.39996 1 8543 8543 7.9102 2.1497 1 19796 11520 12426 12433 23612 23612 0.01035563282516705 KWGLAMLL 8 Unmodified _KWGLAMLL_ 0 0 0 AluJr_dup41058|chr9:98111292-98111493:+|2.008191544278124|0.1919044821346638|3.39|151.0|12|2|anti-sense AluJr_dup41058|chr9:98111292-98111493:+|2.008191544278124|0.1919044821346638|3.39|151.0|12|2|anti-sense AluJr_dup41058|chr9:98111292-98111493:+|2.008191544278124|0.1919044821346638|3.39|151.0|12|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.2773742675781 2 466.275324 930.536095 0.22958 0.00010705 2.7961 0.0013037 3.0257 0.0014108 466.2765834104853 107.96 0.41344 107.96 107.88 108.29 0 66 33 4 0 0 0 0.82752 1 26397 26397 5.2307 0 1 96522000 19797 152 12427 12434 23613 23613 0.06804811273059386 KWHGTGTKIRT 11 Unmodified _KWHGTGTKIRT_ 0 0 0 L1PA15-16_dup1130|chr13:95686261-95687555:-|1.1808981152803928|0.0093327486562438|6.98|151.0|25|2|sense L1PA15-16_dup1130|chr13:95686261-95687555:-|1.1808981152803928|0.0093327486562438|6.98|151.0|25|2|sense L1PA15-16_dup1130|chr13:95686261-95687555:-|1.1808981152803928|0.0093327486562438|6.98|151.0|25|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 642.3621826171875 2 642.862203 1283.70985 0.50011 0.0003215 -0.48911 -0.00031443 0.010991 7.066E-06 643.362880338084 103.55 0.30819 107.26 107.22 107.53 3.7108 76 49 2 0 0 0 22.551 1 24526 24526 2.9952 2.9952 1 108940000 19798 13999 12428 12435 23614 23614 0.07934688302884751 KWHLVYSR 8 Unmodified _KWHLVYSR_ 0 0 0 L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|78|3|anti-sense L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|78|3|anti-sense L1MB5_dup5561|chr10:73430130-73431307:+|1.419436399394363|0.1824847549416597|2.96|150.0|78|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.802001953125 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 28.887 1 28.887 28.387 29.387 0 0 0 0 0.40643 1 4500 4500 2.0598 0 1 19799 10627 12429 12436 23615 23615 0.0524057515392542 KWHNFRLL 8 Unmodified _KWHNFRLL_ 0 0 0 REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|9|3|sense REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.3181762695312 2 557.319443 1112.62433 0.37508 0.00020904 -1.2348 -0.00068819 -0.85973 -0.00047915 557.3186267574554 65.115 0.59547 68.471 68.405 69.001 3.3557 59 34 2 0 0 0 0.82752 1 15566 15566 4.756 0 1 123320 + 19800 26471 12430 12437 23616 23616 0.07252567907880803 KWHNFRLL 8 Unmodified _KWHNFRLL_ 0 0 0 REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|9|3|sense REV__L1MC_dup4439|chrX:1480862-1481112:+|1.2492092307282312|0.0016046306738817|9.6|150.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.3179931640625 2 557.319443 1112.62433 0.43291 0.00024127 -1.299 -0.00072395 -0.86608 -0.00048268 557.3186242004685 65.448 0.28648 68.627 68.436 68.722 3.1795 38 22 2 0 0 0 0.82752 2 15686 15686;15700 13.508 0 1 84269 + 19801 26471 12430 12437 23617;23618 23617 0.07252567907880803 KWHVHRVKYV 10 Unmodified _KWHVHRVKYV_ 0 0 0 REV__ENSG00000183421|ENST00000332512|RIPK4 REV__ENSG00000183421|ENST00000332512|RIPK4 MSMS UPN48_class_I_Rep_1 5 451.2628479003906 3 451.263046 1350.76731 NaN NaN NaN NaN NaN NaN NaN 115.33 1 118.96 118.46 119.46 3.6282 0 0 0 0.53105 1 28054 28054 0.15932 0 1 + 19802 20785 12431 12438 23619 23619 0.10595575299134907 KWHVHRVKYV 10 Unmodified _KWHVHRVKYV_ 0 0 0 REV__ENSG00000183421|ENST00000332512|RIPK4 REV__ENSG00000183421|ENST00000332512|RIPK4 MSMS UPN48_class_I_Rep_3 7 451.26287841796875 3 451.263046 1350.76731 NaN NaN NaN NaN NaN NaN NaN 117.7 1 121.31 120.81 121.81 3.6124 0 0 0 0.53105 1 27995 27995 0.15932 0 1 + 19803 20785 12431 12438 23620 23620 0.10595575299134907 KWIAPAGPRR 10 Unmodified _KWIAPAGPRR_ 0 0 0 L1PBa1_dup143|chr5:119255193-119256832:+|1.979968830779282|0.0373079369316929|5.73|150.0|18|2|sense L1PBa1_dup143|chr5:119255193-119256832:+|1.979968830779282|0.0373079369316929|5.73|150.0|18|2|sense L1PBa1_dup143|chr5:119255193-119256832:+|1.979968830779282|0.0373079369316929|5.73|150.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 576.3427124023438 2 576.343449 1150.67235 0.47922 0.0002762 -1.104 -0.00063628 -0.62478 -0.00036009 576.3425827990493 107.84 0.15082 111.52 111.44 111.59 3.6783 39 14 5 0 0 0 0.52562 1 25524 25524 8.7454 0.58988 1 18903000 19804 15401 12432 12439 23621 23621 0.10303641827931642 KWIFKLMTK 9 Unmodified _KWIFKLMTK_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|102|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|102|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 597.8561401367188 2 597.857012 1193.69947 0.53793 0.00032161 -1.0946 -0.00065443 -0.55669 -0.00033282 597.8559637468195 83.89 0.32783 87.301 87.181 87.509 3.4116 48 40 2 0 0 0 0.49026 1 20973 20973 1.6526 0.32309 1 58955 + 19805 24868 12433 12440 23622 23622 0.11036989324088609 KWIFKLMTK 9 Unmodified _KWIFKLMTK_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|102|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|102|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8565673828125 2 597.857012 1193.69947 0.48391 0.00028931 -0.96222 -0.00057527 -0.47831 -0.00028596 598.3580373583875 86.011 0.30119 89.717 89.617 89.918 3.7058 61 34 2 0 0 0 0.49026 1 20476 20476 1.6526 1.6526 1 168290 + 19806 24868 12433 12440 23623 23623 0.11036989324088609 KWIFKLMTK 9 Unmodified _KWIFKLMTK_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|102|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|102|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 597.857012 1193.69947 0.43259 0.00025862 -0.89552 -0.0005354 -0.46294 -0.00027677 597.8561220698751 83.511 0.17741 87.098 86.999 87.176 3.5871 -0.051888 0.0001368 NaN 1.6526 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 78501 + 19807 24868 12433 12440 0.11036989324088609 KWINKTVVYT 10 Unmodified _KWINKTVVYT_ 0 0 0 L1MB4_dup3493|chr7:92582477-92583487:+|1.0905794871436938|0.0564370132489567|4.27|151.0|22|2|sense L1MB4_dup3493|chr7:92582477-92583487:+|1.0905794871436938|0.0564370132489567|4.27|151.0|22|2|sense L1MB4_dup3493|chr7:92582477-92583487:+|1.0905794871436938|0.0564370132489567|4.27|151.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 626.3580322265625 2 626.358431 1250.70231 NaN NaN NaN NaN NaN NaN NaN 53.321 1 56.931 56.431 57.431 3.6098 0 0 0 0.53105 1 11164 11164 1.3295 0.13619 1 19808 10509 12434 12441 23624 23624 0.08698535982603062 KWKIFHVH 8 Unmodified _KWKIFHVH_ 0 0 0 L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|32|2|sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|32|2|sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 547.7377319335938 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 19.702 1 23.314 22.814 23.814 3.6118 0 0 0 0.40738 1 1859 1859 0.79363 0.10326 1 19809 15419 12435 12442 23625 23625 0.0754546939622287 KWKIFHVH 8 Unmodified _KWKIFHVH_ 0 0 0 L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|32|2|sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|32|2|sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|32|2|sense MSMS UPN48_class_I_Rep_3 7 547.8162841796875 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 20.111 1 23.732 23.232 24.232 3.6215 0 0 0 0.40738 1 1648 1648 0.79363 0 1 19810 15419 12435 12442 23626 23626 0.0754546939622287 KWKIMLFK 8 Unmodified _KWKIMLFK_ 0 0 0 REV__Charlie1a_dup4316|chr12:120818695-120820077:-|2.462298528769014|0.028389613285366|6.44|151.0|21|2|sense REV__Charlie1a_dup4316|chr12:120818695-120820077:-|2.462298528769014|0.028389613285366|6.44|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 547.3331909179688 2 547.333173 1092.65179 NaN NaN NaN NaN NaN NaN NaN 111.08 1 114.74 114.24 115.24 3.6654 0 0 0 0.40746 1 26354 26354 0.69038 0 1 + 19811 17330 12436 12443 23627 23627 0.109173351238951 KWKKIMIF 8 Unmodified _KWKKIMIF_ 0 0 0 REV__L1ME3Cz_dup8901|chr12:104696694-104697139:-|2.893835384326469|0.0063072028990103|8.84|151.0|13|3|sense REV__L1ME3Cz_dup8901|chr12:104696694-104697139:-|2.893835384326469|0.0063072028990103|8.84|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 547.3317260742188 2 547.333173 1092.65179 NaN NaN NaN NaN NaN NaN NaN 85.935 1 89.551 89.051 90.051 3.6153 0 0 0 0.40746 1 21460 21460 0.69038 0 1 + 19812 28131 12437 12444 23628 23628 0.109173351238951 KWKKKKKKKKK 11 Unmodified _KWKKKKKKKKK_ 0 0 0 AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense AluJr_dup39198|chr9:302847-303181:+|1.110408205091761|0.0124515483761643|6.48|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 496.2955627441406 3 496.020446 1485.03951 NaN NaN NaN NaN NaN NaN NaN 116.41 1 119.91 119.41 120.41 3.4965 0 0 0 0.38417 1 28420 28420 0 0 1 19813 151 12438 12445 23629 23629 0.3163896432040474 KWKLIILNAV 10 Unmodified _KWKLIILNAV_ 0 0 0 REV__L1MEb_dup1386|chr14:73293943-73294207:-|1.435193729299369|0.1071987192679166|3.74|151.0|13|1|anti-sense REV__L1MEb_dup1386|chr14:73293943-73294207:-|1.435193729299369|0.1071987192679166|3.74|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_3 7 599.3905029296875 2 599.389534 1196.76451 NaN NaN NaN NaN NaN NaN NaN 28.153 1 31.895 31.395 32.395 3.7424 0 0 0 0.53105 1 3793 3793 0.40072 0.050084 1 + 19814 28338 12439 12446 23630 23630 0.17400307121624792 KWKPLEFL 8 Unmodified _KWKPLEFL_ 0 0 0 ENSG00000158292|ENST00000377893|GPR153 ENSG00000158292|ENST00000377893|GPR153 ENSG00000158292|ENST00000377893|GPR153 MSMS UPN48_class_I_Rep_1 5 530.8135375976562 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.35 114.85 115.85 3.6326 0 0 0 0.40746 1 27104 27104 0.69038 0 1 19815 3795 12440 12447 23631 23631 0.0842811172499296 KWLAACHSHS 10 Unmodified _KWLAACHSHS_ 0 0 0 REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|329|3|anti-sense REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|329|3|anti-sense MSMS UPN47_class_I_Rep_3 4 570.213623046875 2 570.274375 1138.5342 NaN NaN NaN NaN NaN NaN NaN 21.79 1 25.14 24.64 25.64 3.3496 0 0 0 0.53105 1 2497 2497 1.6526 0.85899 1 + 19816 28938 12441 12448 23632 23632 -0.029528494828582552 KWLGPHHI 8 Unmodified _KWLGPHHI_ 0 0 0 REV__MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|15|3|sense REV__MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 494.3306579589844 2 494.279786 986.54502 NaN NaN NaN NaN NaN NaN NaN 111.08 1 114.65 114.15 115.15 3.572 0 0 0 0.40738 1 27389 27389 0.79363 0 1 + 19817 31127 12442 12449 23633 23633 0.0512092095374328 KWLHHFIL 8 Unmodified _KWLHHFIL_ 0 0 0 HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|98|3|anti-sense HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|98|3|anti-sense HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|98|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.1057739257812 2 547.318912 1092.62327 NaN NaN NaN NaN NaN NaN NaN 45.56 1 49.196 48.696 49.696 3.6369 0 0 0 0.40604 1 8737 8737 2.5775 0.73324 1 19818 7829 12443 12450 23634 23634 0.08066353538993098 KWLKLFDY 8 Unmodified _KWLKLFDY_ 0 0 0 REV__L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|308|3|anti-sense REV__L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|308|3|anti-sense MSMS UPN48_class_I_Rep_1 5 556.7982177734375 2 556.810585 1111.60662 NaN NaN NaN NaN NaN NaN NaN 112.44 1 116.08 115.58 116.58 3.6321 0 0 0 0.40746 1 27289 27289 0.69038 0 1 + 19819 25178 12444 12451 23635 23635 0.055278078623587135 KWLLHRTRLQI 11 Unmodified _KWLLHRTRLQI_ 0 0 0 REV__ENST00000367590.8_1_1:180601401-180756909:+|nuORF REV__ENST00000367590.8_1_1:180601401-180756909:+|nuORF MSMS UPN46_class_I_Rep_3 1 488.6356506347656 3 488.636772 1462.88849 NaN NaN NaN NaN NaN NaN NaN 53.028 1 53.028 52.528 53.528 0 0 0 0 0.38417 1 11379 11379 2.6312 1.4164 1 + 19820 21931 12445 12452 23636 23636 0.1755577794178862 KWLPQDVKKK 10 Unmodified _KWLPQDVKKK_ 0 0 0 REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF MSMS UPN46_class_I_Rep_3 1 635.3853759765625 2 635.387522 1268.76049 NaN NaN NaN NaN NaN NaN NaN 93.714 1 93.714 93.214 94.214 0 0 0 0 0.53105 1 22720 22720 1.4819 0.15237 1 + 19821 22115 12446 12453 23637 23637 0.1368621762787825 KWLPQDVKKK 10 Unmodified _KWLPQDVKKK_ 0 0 0 REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF MSMS UPN48_class_I_Rep_1 5 635.3701782226562 2 635.387522 1268.76049 NaN NaN NaN NaN NaN NaN NaN 90.157 1 93.782 93.282 94.282 3.6255 0 0 0 0.53105 1 21667 21667 1.4819 0.15237 1 + 19822 22115 12446 12453 23638 23638 0.1368621762787825 KWLPQVVY 8 Unmodified _KWLPQVVY_ 0 0 0 REV__L1PA16_dup10521|chr12:14939686-14941124:+|2.748799259224308|0.1704024082654921|4.01|151.0|48|3|sense REV__L1PA16_dup10521|chr12:14939686-14941124:+|2.748799259224308|0.1704024082654921|4.01|151.0|48|3|sense MSMS UPN48_class_I_Rep_1 5 516.79736328125 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 111.73 1 115.36 114.86 115.86 3.6326 0 0 0 0.40746 1 27107 27107 0.69038 0 1 + 19823 29317 12447 12454 23639 23639 0.06587538690905603 KWLRWFKKWLI 11 Unmodified _KWLRWFKKWLI_ 0 0 0 L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 535.3253173828125 3 535.325646 1602.95511 0.34193 0.00018304 -0.40995 -0.00021946 -0.06802 -3.6413E-05 535.3252797133792 107.28 0.24586 110.91 110.72 110.97 3.6299 59 25 6 0 0 0 0.68491 1 25848 25848 0.08335 0.08335 1 32961000 19824 10262 12448 12455 23640 23640 0.17775013503683113 KWLRWFKKWLI 11 Unmodified _KWLRWFKKWLI_ 0 0 0 L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 535.6598510742188 3 535.325646 1602.95511 0.44842 0.00024005 -0.40594 -0.00021731 0.042481 2.2741E-05 535.3254047547755 107.27 0.22299 110.95 110.87 111.1 3.6783 53 19 6 0 0 0 0.68491 1 25339 25339 0.08335 0.08335 1 28908000 19825 10262 12448 12455 23641 23641 0.17775013503683113 KWLVECAL 8 Unmodified _KWLVECAL_ 0 0 0 REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|317|2|anti-sense REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|317|2|anti-sense MSMS UPN47_class_I_Rep_2 3 481.26141357421875 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 64.653 1 67.909 67.409 68.409 3.2556 0 0 0 0.40738 1 15417 15417 0.79363 0 1 + 19826 28972 12449 12456 23642 23642 0.028439170307592576 KWNLFKRK 8 Unmodified _KWNLFKRK_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS UPN48_class_I_Rep_2 6 560.3412475585938 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 80.828 1 84.474 83.974 84.974 3.6463 0 0 0 0.40625 1 19176 19176 2.3027 0.4585 1 19827 1218 12450 12457 23643 23643 0.11669427459014514 KWNLHRKK 8 Unmodified _KWNLHRKK_ 0 0 0 REV__L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|50|2|sense REV__L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|50|2|sense MSMS UPN47_class_I_Rep_2 3 555.3372802734375 2 555.338167 1108.66178 NaN NaN NaN NaN NaN NaN NaN 106.41 1 109.95 109.45 110.45 3.5345 0 0 0 0.40738 1 25778 25778 0.79363 0 1 + 19828 25709 12451 12458 23644 23644 0.11179659173490109 KWNLRLPKN 9 Unmodified _KWNLRLPKN_ 0 0 0 REV__MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|21|1|anti-sense REV__MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|21|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.849365234375 2 584.851107 1167.68766 NaN NaN NaN NaN NaN NaN NaN 44.263 1 44.263 43.763 44.763 0 0 0 0 0.38639 1 8905 8905 3.9444 0.3479 1 + 19829 31557 12452 12459 23645 23645 0.11052508625107293 KWNPHKKKRKK 11 Unmodified _KWNPHKKKRKK_ 0 0 0 REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|9|1|sense REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.3124084472656 3 493.3124 1476.91537 0.27763 0.00013696 -0.89065 -0.00043937 -0.61302 -0.00030241 493.31220276200327 44.431 0.1486 44.431 44.334 44.483 0 30 16 3 0 0 0 0.67113 1 8949 8949 1.3296 0 1 114630 + 19830 30533 12453 12460 23646 23646 0.1959888655294435 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS UPN48_class_I_Rep_1 5 545.7869873046875 2 545.787641 1089.56073 0.49678 0.00027114 -0.075221 -4.1055E-05 0.42156 0.00023008 545.7872898652009 55.623 0.64735 59.131 58.771 59.418 3.5082 70 41 2 0 0 0 0.31951 3 11862 11821;11862;11931 27.223 15.583 1 230620 19831 1637 12454 12461 23647;23648;23649 23648 0.019531626801381208 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS UPN48_class_I_Rep_2 6 545.7870483398438 2 545.787641 1089.56073 0.60853 0.00033213 0.076288 4.1637E-05 0.68482 0.00037377 545.7874099290565 55.478 0.71925 59.034 58.807 59.526 3.5559 71 44 2 0 0 0 0.29911 3 11832 11791;11832;11875 33.445 19.937 1 147320 19832 1637 12454 12461 23650;23651;23652 23651 0.019531626801381208 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS UPN48_class_I_Rep_3 7 545.787841796875 2 545.787641 1089.56073 0.357 0.00019485 0.21273 0.00011611 0.56973 0.00031095 545.7874631082442 55.52 0.56522 59.075 58.782 59.348 3.5554 64 34 2 0 0 0 0.4561 1 11807 11807 15.248 3.6082 1 182750 19833 1637 12454 12461 23653 23653 0.019531626801381208 KWPCKVISFG 10 Unmodified _KWPCKVISFG_ 0 0 0 MER4D_dup481|chr6:138890958-138891830:+|1.3739206071422565|0.2903313844871145|2.24|151.0|16|2|sense MER4D_dup481|chr6:138890958-138891830:+|1.3739206071422565|0.2903313844871145|2.24|151.0|16|2|sense MER4D_dup481|chr6:138890958-138891830:+|1.3739206071422565|0.2903313844871145|2.24|151.0|16|2|sense MSMS UPN47_class_I_Rep_1 2 582.8170166015625 2 582.815344 1163.61614 NaN NaN NaN NaN NaN NaN NaN 64.73 1 68.085 67.585 68.585 3.3557 0 0 0 0.53105 1 15396 15396 6.2058 0 1 19834 16028 12455 12462 23654 23654 0.04087252876229286 KWPRQSSK 8 Unmodified _KWPRQSSK_ 0 0 0 L1MA7_dup1460|chr3:119424724-119427829:-|2.016947441213748|0.3126358225838402|2.69|151.0|67|2|sense L1MA7_dup1460|chr3:119424724-119427829:-|2.016947441213748|0.3126358225838402|2.69|151.0|67|2|sense L1MA7_dup1460|chr3:119424724-119427829:-|2.016947441213748|0.3126358225838402|2.69|151.0|67|2|sense MSMS UPN46_class_I_Rep_3 1 508.7860412597656 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 42.018 1 42.018 41.518 42.518 0 0 0 0 0.40643 1 8285 8285 2.0598 1.2661 1 19835 10005 12456 12463 23655 23655 0.04915698257229906 KWPYYPRY 8 Unmodified _KWPYYPRY_ 0 0 0 L1PA6_dup962|chr3:15698143-15700468:+|1.907478667319608|0.1775605517265929|3.43|151.0|13|1|sense L1PA6_dup962|chr3:15698143-15700468:+|1.907478667319608|0.1775605517265929|3.43|151.0|13|1|sense L1PA6_dup962|chr3:15698143-15700468:+|1.907478667319608|0.1775605517265929|3.43|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 586.7955932617188 2 586.798009 1171.58147 NaN NaN NaN NaN NaN NaN NaN 28.633 1 28.633 28.133 29.133 0 0 0 0 0.40746 1 4423 4423 0.69038 0 1 19836 14681 12457 12464 23656 23656 0.0025375305979196128 KWQDTQFNEI 10 Unmodified _KWQDTQFNEI_ 0 0 0 REV__L1M4b_dup4167|chr19:40025616-40026792:-|1.985970363342444|0.4859954989077099|2.03|151.0|3|1|sense REV__L1M4b_dup4167|chr19:40025616-40026792:-|1.985970363342444|0.4859954989077099|2.03|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 436.8793029785156 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 96.459 1 100.24 99.736 100.74 3.7767 0 0 0 0.53105 1 23913 23913 1.7423 0 1 + 19837 24558 12458 12465 23657 23657 -0.026887096788186682 KWQFKSFF 8 Unmodified _KWQFKSFF_ 0 0 0 REV__ENST00000513442.1_1_5:180338577-180375566:+|nuORF REV__ENST00000513442.1_1_5:180338577-180375566:+|nuORF MSMS UPN46_class_I_Rep_3 1 559.2960815429688 2 559.295102 1116.57565 NaN NaN NaN NaN NaN NaN NaN 32.759 1 32.759 32.259 33.259 0 0 0 0 0.40581 1 5646 5646 2.8892 0 1 + 19838 18501 12459 12466 23658 23658 0.022026545481367066 KWQIEFLE 8 Unmodified _KWQIEFLE_ 0 0 0 Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|86|1|anti-sense Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|86|1|anti-sense Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|86|1|anti-sense MSMS UPN47_class_I_Rep_3 4 546.789306640625 2 546.78985 1091.56515 NaN NaN NaN NaN NaN NaN NaN 27.094 1 30.436 29.936 30.936 3.3422 0 0 0 0.40746 1 4064 4064 0.69038 0 1 19839 520 12460 12467 23659 23659 0.023026271030630596 KWQPIIKSD 9 Unmodified _KWQPIIKSD_ 0 0 0 REV__Charlie7_dup2164|chr9:77830527-77830837:+|1.0482486811011529|0.016647923887141|5.98|150.0|12|1|anti-sense REV__Charlie7_dup2164|chr9:77830527-77830837:+|1.0482486811011529|0.016647923887141|5.98|150.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 557.8165893554688 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 45.413 1 48.929 48.429 49.429 3.5162 0 0 0 0.39518 1 8754 8754 1.8442 0.36234 1 + 19840 17393 12461 12468 23660 23660 0.0659800488572273 KWRGGVKG 8 Unmodified _KWRGGVKG_ 0 0 0 REV__nc|ENSG00000130595|P45378-5|TNNT3 REV__nc|ENSG00000130595|P45378-5|TNNT3 MULTI-MSMS UPN47_class_I_Rep_1 2 444.2641906738281 2 444.264136 886.51372 0.16863 7.4916E-05 0.30577 0.00013584 0.4744 0.00021076 444.2642015328567 107.75 0.30473 111.42 111.36 111.66 3.6724 58 22 4 0 0 0 0.82752 1 26399 26399 2.3027 0 1 51844000 + 19841 18943 12462 12469 23661 23661 0.06592347919672648 KWRGGVKG 8 Unmodified _KWRGGVKG_ 0 0 0 REV__nc|ENSG00000130595|P45378-5|TNNT3 REV__nc|ENSG00000130595|P45378-5|TNNT3 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 444.264136 886.51372 -0.042155 -1.8728E-05 0.4055 0.00018015 0.36334 0.00016142 444.26423913514674 107.76 0.27666 111.3 111.22 111.49 3.5345 -0.16326 4.6556E-05 NaN 2.3027 76 32 4 NaN NaN NaN NaN 0 NaN NaN 0 69752000 + 19842 18943 12462 12469 0.06592347919672648 KWRGGVKG 8 Unmodified _KWRGGVKG_ 0 0 0 REV__nc|ENSG00000130595|P45378-5|TNNT3 REV__nc|ENSG00000130595|P45378-5|TNNT3 MULTI-MATCH UPN47_class_I_Rep_3 4 2 444.264136 886.51372 -0.24377 -0.0001083 1.4929 0.00066325 1.2491 0.00055495 444.26504863684875 108.11 0.069229 111.65 111.61 111.68 3.5382 0.18723 0.0010128 NaN 2.3027 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 955190 + 19843 18943 12462 12469 0.06592347919672648 KWRGGVKG 8 Unmodified _KWRGGVKG_ 0 0 0 REV__nc|ENSG00000130595|P45378-5|TNNT3 REV__nc|ENSG00000130595|P45378-5|TNNT3 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 444.264136 886.51372 -0.016632 -7.3892E-06 0.39441 0.00017522 0.37778 0.00016783 444.26429072318535 107.75 0.42974 111.38 111.28 111.71 3.6313 -0.078993 3.6704E-05 NaN 2.3027 108 40 4 NaN NaN NaN NaN 0 NaN NaN 0 99344000 + 19844 18943 12462 12469 0.06592347919672648 KWRGGVKG 8 Unmodified _KWRGGVKG_ 0 0 0 REV__nc|ENSG00000130595|P45378-5|TNNT3 REV__nc|ENSG00000130595|P45378-5|TNNT3 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 444.264136 886.51372 0.13456 5.978E-05 0.21074 9.3622E-05 0.3453 0.0001534 444.26414609659923 107.73 0.20393 111.41 111.35 111.56 3.6783 -0.046568 -0.0001265 NaN 2.3027 58 20 4 NaN NaN NaN NaN 0 NaN NaN 0 113090000 + 19845 18943 12462 12469 0.06592347919672648 KWRGGVKG 8 Unmodified _KWRGGVKG_ 0 0 0 REV__nc|ENSG00000130595|P45378-5|TNNT3 REV__nc|ENSG00000130595|P45378-5|TNNT3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 444.264136 886.51372 0.15442 6.8605E-05 0.71311 0.00031681 0.86753 0.00038541 444.264525824701 107.92 0.10211 111.6 111.56 111.66 3.6813 0.13681 0.00031987 NaN 2.3027 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1166000 + 19846 18943 12462 12469 0.06592347919672648 KWRLKLVS 8 Unmodified _KWRLKLVS_ 0 0 0 REV__MER92B_dup669|chr19:12289336-12289640:+|1.0845480949839714|0.0604509958890605|4.17|151.0|25|3|anti-sense REV__MER92B_dup669|chr19:12289336-12289640:+|1.0845480949839714|0.0604509958890605|4.17|151.0|25|3|anti-sense MSMS UPN47_class_I_Rep_2 3 515.33154296875 2 515.332019 1028.64948 NaN NaN NaN NaN NaN NaN NaN 75.666 1 78.988 78.488 79.488 3.3216 0 0 0 0.40746 1 18694 18694 0.69038 0 1 + 19847 31577 12463 12470 23662 23662 0.13630622710434181 KWRLKLVS 8 Unmodified _KWRLKLVS_ 0 0 0 REV__MER92B_dup669|chr19:12289336-12289640:+|1.0845480949839714|0.0604509958890605|4.17|151.0|25|3|anti-sense REV__MER92B_dup669|chr19:12289336-12289640:+|1.0845480949839714|0.0604509958890605|4.17|151.0|25|3|anti-sense MSMS UPN47_class_I_Rep_3 4 515.3310546875 2 515.332019 1028.64948 NaN NaN NaN NaN NaN NaN NaN 77.051 1 80.32 79.82 80.82 3.269 0 0 0 0.40746 1 19173 19173 0.69038 0 1 + 19848 31577 12463 12470 23663 23663 0.13630622710434181 KWRPKMRG 8 Unmodified _KWRPKMRG_ 0 0 0 REV__L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|55|2|sense REV__L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|55|2|sense MSMS UPN48_class_I_Rep_3 7 530.2422485351562 2 529.805645 1057.59674 NaN NaN NaN NaN NaN NaN NaN 27.753 1 31.508 31.008 32.008 3.7555 0 0 0 0.40746 1 3682 3682 0.69038 0 1 + 19849 28934 12464 12471 23664 23664 0.07024341375995391 KWRQQQRLL 9 Unmodified _KWRQQQRLL_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS UPN46_class_I_Rep_3 1 628.3746948242188 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 37.951 1 37.951 37.451 38.451 0 0 0 0 0.4007 1 7184 7184 0.52476 0 1 + 19850 20925 12465 12472 23665 23665 0.11374698402414651 KWRVVALVQ 9 Unmodified _KWRVVALVQ_ 0 0 0 L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|99|2|anti-sense L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|99|2|anti-sense L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|99|2|anti-sense MSMS UPN46_class_I_Rep_3 1 549.8450317382812 2 549.842751 1097.67095 NaN NaN NaN NaN NaN NaN NaN 108.56 1 108.56 108.06 109.06 0 0 0 0 0.35339 1 26555 26555 7.9102 0.62092 1 19851 8719 12466 12473 23666 23666 0.1260200773917859 KWSYRKLK 8 Unmodified _KWSYRKLK_ 0 0 0 REV__L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|4|1|sense REV__L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 554.833740234375 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 87.846 1 91.233 90.733 91.733 3.3873 0 0 0 0.40746 1 22024 22024 0.69038 0 1 + 19852 28343 12467 12474 23667 23667 0.1057772122210281 KWTKKRLRFRD 11 Unmodified _KWTKKRLRFRD_ 0 0 0 REV__nc|ENSG00000170242|Q96K76-2|USP47 REV__nc|ENSG00000170242|Q96K76-2|USP47 MSMS UPN47_class_I_Rep_3 4 511.97515869140625 3 511.975676 1532.9052 NaN NaN NaN NaN NaN NaN NaN 60.89 1 64.055 63.555 64.555 3.1651 0 0 0 0.38417 1 14328 14328 0.094841 0 1 + 19853 20352 12468 12475 23668 23668 0.16006278827694587 KWTPPNKR 8 Unmodified _KWTPPNKR_ 0 0 0 REV__L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|21|1|sense REV__L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|21|1|sense MSMS UPN47_class_I_Rep_1 2 513.7862548828125 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 52.986 1 56.544 56.044 57.044 3.5585 0 0 0 0.40404 1 11833 11833 5.2307 0.47466 1 + 19854 27234 12469 12476 23669 23669 0.06528288636877733 KWTRVILLN 9 Unmodified _KWTRVILLN_ 0 0 0 ENSG00000166664|ENST00000299847|CHRFAM7A;ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7 ENSG00000166664|ENST00000299847|CHRFAM7A ENSG00000166664|ENST00000299847|CHRFAM7A MSMS UPN46_class_I_Rep_3 1 571.8580932617188 2 571.855858 1141.69716 NaN NaN NaN NaN NaN NaN NaN 108.17 1 108.17 107.67 108.67 0 0 0 0 0.25702 1 26431 26431 13.042 2.2185 1 19855 4255 12470 12477 23670 23670 0.13198276910679851 KWTVMKMK 8 Unmodified _KWTVMKMK_ 0 0 0 ENST00000295321.8_1_2:128262310-128262487:-|nuORF ENST00000295321.8_1_2:128262310-128262487:-|nuORF ENST00000295321.8_1_2:128262310-128262487:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 526.8217163085938 2 526.293191 1050.57183 -0.024713 -1.3006E-05 -0.012421 -6.5369E-06 -0.037134 -1.9543E-05 526.2925874245909 25.598 0.60834 25.598 25.445 26.053 0 61 53 2 0 0 0 0.72333 1 3630 3630 2.0598 0.21551 1 45820 19856 6053 12471 12478 23671 23671 0.04856525458399119 KWVAIAQIKI 10 Unmodified _KWVAIAQIKI_ 0 0 0 REV__ENST00000399580.2_1_X:83004518-83004785:-|nuORF REV__ENST00000399580.2_1_X:83004518-83004785:-|nuORF MSMS UPN48_class_I_Rep_3 7 585.375244140625 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 50.146 1 53.767 53.267 54.267 3.621 0 0 0 0.53105 1 10143 10143 1.4819 0.28856 1 + 19857 22153 12472 12479 23672 23672 0.1555973408749196 KWVHRFTF 8 Unmodified _KWVHRFTF_ 0 0 0 REV__MSTB1_dup3740|chr14:102630036-102630442:+|1.8264162128791932|0.0048345991170037|8.56|151.0|5|1|sense REV__MSTB1_dup3740|chr14:102630036-102630442:+|1.8264162128791932|0.0048345991170037|8.56|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 560.8047485351562 2 560.806168 1119.59778 NaN NaN NaN NaN NaN NaN NaN 72.995 1 76.532 76.032 77.032 3.5373 0 0 0 0.388 1 17055 17055 12.532 1.7076 1 + 19858 31903 12473 12480 23673 23673 0.04276879016560997 KWVIVMKW 8 Unmodified _KWVIVMKW_ 0 0 0 MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.3159790039062 2 545.317523 1088.62049 0.38215 0.00020839 -1.2791 -0.00069753 -0.89697 -0.00048914 545.3166879591903 87.994 0.16746 87.994 87.892 88.06 0 32 17 3 0 0 0 0.82752 1 21099 21099 2.5775 0 1 175080 19859 16064 12474 12481 23674 23674 0.07972762089821117 KWVIVMKW 8 Unmodified _KWVIVMKW_ 0 0 0 MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.317138671875 2 545.317523 1088.62049 0.38171 0.00020815 -1.3999 -0.00076339 -1.0182 -0.00055524 545.3166252771549 88.13 0.16341 88.13 88.047 88.21 0 21 12 2 0 0 0 0.82752 1 21141 21141 2.5775 0 1 275850 19860 16064 12474 12481 23675 23675 0.07972762089821117 KWVIVMKW 8 Unmodified _KWVIVMKW_ 0 0 0 MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.317523 1088.62049 0.38171 0.00020815 -1.3999 -0.00076339 -1.0182 -0.00055524 545.3166252771549 88.13 0.16341 88.13 88.047 88.21 0 0.038483 5.4858E-06 NaN 2.5775 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 275850 19861 16064 12474 12481 0.07972762089821117 KWVIVMKW 8 Unmodified _KWVIVMKW_ 0 0 0 MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|34|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 545.317523 1088.62049 0.4683 0.00025537 -1.4169 -0.00077266 -0.9486 -0.00051729 545.3163911121984 84.691 0.064125 88.053 88.013 88.077 3.3615 -0.038483 -1.3045E-05 NaN 2.5775 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 46276 19862 16064 12474 12481 0.07972762089821117 KWVMLHRRL 9 Unmodified _KWVMLHRRL_ 0 0 0 REV__ENSG00000165282|ENST00000378617|PIGO REV__ENSG00000165282|ENST00000378617|PIGO MULTI-MSMS UPN46_class_I_Rep_3 1 619.8694458007812 2 619.868777 1237.723 0.65613 0.00040671 0.52292 0.00032414 1.179 0.00073085 619.8689052435652 89.943 0.11558 89.943 89.918 90.033 0 10 5 3 0 0 0 0.50088 1 21667 21667 0.52476 0 1 641980 + 19863 20113 12475 12482 23676 23676 0.1136484788130474 KWVMLHRRL 9 Unmodified _KWVMLHRRL_ 0 0 0 REV__ENSG00000165282|ENST00000378617|PIGO REV__ENSG00000165282|ENST00000378617|PIGO MSMS UPN48_class_I_Rep_2 6 619.86962890625 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 84.621 1 88.315 87.815 88.815 3.6937 0 0 0 0.4007 1 20137 20137 0.52476 0 1 + 19864 20113 12475 12482 23677 23677 0.1136484788130474 KWVMLHRRL 9 Unmodified _KWVMLHRRL_ 0 0 0 REV__ENSG00000165282|ENST00000378617|PIGO REV__ENSG00000165282|ENST00000378617|PIGO MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 619.868777 1237.723 0.50005 0.00030996 0.57108 0.000354 1.0711 0.00066396 619.8691553581542 86.387 0.086746 90.002 89.924 90.011 3.6153 0.029416 3.2567E-05 NaN 0.52476 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 58808 + 19865 20113 12475 12482 0.1136484788130474 KWVQVLGQLP 10 Unmodified _KWVQVLGQLP_ 0 0 0 PABL_A_dup31|chr1:169391474-169392119:-|1.1443594522598113|0.3175369587642051|1.85|151.0|29|1|anti-sense PABL_A_dup31|chr1:169391474-169392119:-|1.1443594522598113|0.3175369587642051|1.85|151.0|29|1|anti-sense PABL_A_dup31|chr1:169391474-169392119:-|1.1443594522598113|0.3175369587642051|1.85|151.0|29|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3482666015625 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 34.748 1 34.748 34.248 35.248 0 0 0 0 0.53105 1 6242 6242 1.4819 0.28856 1 19866 16877 12476 12483 23678 23678 0.10450570673765469 KWWCHILRK 9 Unmodified _KWWCHILRK_ 0 0 0 REV__L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|83|3|sense REV__L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|83|3|sense MSMS UPN47_class_I_Rep_1 2 635.358154296875 2 635.355502 1268.69645 NaN NaN NaN NaN NaN NaN NaN 41.392 1 45.064 44.564 45.564 3.6719 0 0 0 0.4007 1 8307 8307 0.52476 0.17413 1 + 19867 29096 12477 12484 23679 23679 0.07285158989930096 KWWLLLLR 8 Unmodified _KWWLLLLR_ 0 0 0 REV__MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|24|2|anti-sense REV__MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.3585815429688 2 564.358037 1126.70152 NaN NaN NaN NaN NaN NaN NaN 65.704 1 69.156 68.656 69.656 3.4516 0 0 0 0.40746 1 14967 14967 0.69038 0.16561 1 + 19868 31910 12478 12485 23680 23680 0.14323786124214166 KWWQWWIWWW 10 Unmodified _KWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|151|28.39|0.0|21.44|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|151|28.39|0.0|21.44|+|1|HNRNPA1,HNRNPA1|1 MSMS UPN48_class_I_Rep_2 6 564.2793579101562 3 564.275063 1689.80336 NaN NaN NaN NaN NaN NaN NaN 23.561 1 27.201 26.701 27.701 3.6397 0 0 0 0.53105 1 2591 2591 0 0 1 + 19869 17430 12479 12486 23681 23681 -0.01394967524038293 KWYQHLRKVP 10 Unmodified _KWYQHLRKVP_ 0 0 0 L1ME2z_dup2449|chr6:75655300-75655781:-|1.4930790439475912|0.044356355737627|5.07|151.0|19|1|anti-sense L1ME2z_dup2449|chr6:75655300-75655781:-|1.4930790439475912|0.044356355737627|5.07|151.0|19|1|anti-sense L1ME2z_dup2449|chr6:75655300-75655781:-|1.4930790439475912|0.044356355737627|5.07|151.0|19|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.5972900390625 3 452.262935 1353.76697 0.14224 6.4329E-05 -0.19593 -8.8611E-05 -0.053688 -2.4281E-05 452.2628087425035 58.948 1.3532 62.435 61.475 62.828 3.487 150 83 2 0 0 0 0.56444 1 12650 12650 0.69767 0.24315 1 280000 19870 12559 12480 12487 23682 23682 0.10424155579221406 KWYYTSYFH 9 Unmodified _KWYYTSYFH_ 0 0 0 REV__L1MA8_dup2671|chr4:173304425-173306727:-|2.5634218932835213|0.1581877430832527|4.02|151.0|62|3|sense REV__L1MA8_dup2671|chr4:173304425-173306727:-|2.5634218932835213|0.1581877430832527|4.02|151.0|62|3|sense MSMS UPN48_class_I_Rep_2 6 647.7986450195312 2 647.798206 1293.58186 NaN NaN NaN NaN NaN NaN NaN 33.515 1 37.176 36.676 37.676 3.6607 0 0 0 0.4007 1 5299 5299 0.52476 0 1 + 19871 25264 12481 12488 23683 23683 -0.05318872011025633 KYAFRVAH 8 Unmodified _KYAFRVAH_ 0 0 0 HERVIP10F-int_dup83|chr3:197244554-197246823:-|1.1311377542314112|0.0521212442300762|4.44|151.0|8|1|sense HERVIP10F-int_dup83|chr3:197244554-197246823:-|1.1311377542314112|0.0521212442300762|4.44|151.0|8|1|sense HERVIP10F-int_dup83|chr3:197244554-197246823:-|1.1311377542314112|0.0521212442300762|4.44|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 496.2760925292969 2 496.277244 990.539935 NaN NaN NaN NaN NaN NaN NaN 55.167 1 58.345 57.845 58.845 3.1779 0 0 0 0.40625 1 12585 12585 2.3027 0 1 19872 8211 12482 12489 23684 23684 0.04428617091127762 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3277282714844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.862 1 20.862 20.362 21.362 0 0 0 0 0.38417 1 2240 2240 0 0 1 + 19873 24608 12483 12490 23685 23685 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.26 1 21.26 20.76 21.76 0 0 0 0 0.38417 1 2348 2348 0 0 1 + 19874 24608 12483 12490 23686 23686 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.354 1 21.354 20.854 21.854 0 0 0 0 0.38417 1 2375 2375 0 0 1 + 19875 24608 12483 12490 23687 23687 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.104 1 23.104 22.604 23.604 0 0 0 0 0.38417 1 2845 2845 0 0 1 + 19876 24608 12483 12490 23688 23688 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.953 1 23.953 23.453 24.453 0 0 0 0 0.38417 1 3081 3081 0 0 1 + 19877 24608 12483 12490 23689 23689 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.728 1 24.728 24.228 25.228 0 0 0 0 0.38417 1 3289 3289 0 0 1 + 19878 24608 12483 12490 23690 23690 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.213 1 25.213 24.713 25.713 0 0 0 0 0.38417 1 3424 3424 0 0 1 + 19879 24608 12483 12490 23691 23691 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.443 1 29.443 28.943 29.943 0 0 0 0 0.38417 1 4663 4663 0 0 1 + 19880 24608 12483 12490 23692 23692 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 32.727 1 32.727 32.227 33.227 0 0 0 0 0.38417 1 5637 5637 0 0 1 + 19881 24608 12483 12490 23693 23693 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3289794921875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 75.58 1 75.58 75.08 76.08 0 0 0 0 0.38417 1 17581 17581 0 0 1 + 19882 24608 12483 12490 23694 23694 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 75.752 1 75.752 75.252 76.252 0 0 0 0 0.38417 1 17632 17632 0 0 1 + 19883 24608 12483 12490 23695 23695 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3299255371094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 78.723 1 78.723 78.223 79.223 0 0 0 0 0.38417 1 18454 18454 0 0 1 + 19884 24608 12483 12490 23696 23696 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3305358886719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 81.368 1 81.368 80.868 81.868 0 0 0 0 0.38417 1 19212 19212 0 0 1 + 19885 24608 12483 12490 23697 23697 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 81.553 1 81.553 81.053 82.053 0 0 0 0 0.38417 1 19264 19264 0 0 1 + 19886 24608 12483 12490 23698 23698 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.3290710449219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 82.913 1 82.913 82.413 83.413 0 0 0 0 0.38417 1 19664 19664 0 0 1 + 19887 24608 12483 12490 23699 23699 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 102.59 1 102.59 102.09 103.09 0 0 0 0 0.38417 1 25039 25039 0 0 1 + 19888 24608 12483 12490 23700 23700 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 469.32769775390625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 116.82 1 116.82 116.32 117.32 0 0 0 0 0.38417 1 28932 28932 0 0 1 + 19889 24608 12483 12490 23701 23701 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3280944824219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 15.021 1 18.496 17.996 18.996 3.475 0 0 0 0.38417 1 712 712 0 0 1 + 19890 24608 12483 12490 23702 23702 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 15.686 1 19.183 18.683 19.683 3.4968 0 0 0 0.38417 1 879 879 0 0 1 + 19891 24608 12483 12490 23703 23703 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.563 1 23.174 22.674 23.674 3.6118 0 0 0 0.38417 1 1821 1821 0 0 1 + 19892 24608 12483 12490 23704 23704 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.688 1 23.3 22.8 23.8 3.6118 0 0 0 0.38417 1 1855 1855 0 0 1 + 19893 24608 12483 12490 23705 23705 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.84 1 23.451 22.951 23.951 3.6118 0 0 0 0.38417 1 1892 1892 0 0 1 + 19894 24608 12483 12490 23706 23706 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.327880859375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.08 1 23.692 23.192 24.192 3.6118 0 0 0 0.38417 1 1955 1955 0 0 1 + 19895 24608 12483 12490 23707 23707 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.594 1 24.238 23.738 24.738 3.6436 0 0 0 0.38417 1 2095 2095 0 0 1 + 19896 24608 12483 12490 23708 23708 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3276672363281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.78 1 24.424 23.924 24.924 3.6436 0 0 0 0.38417 1 2148 2148 0 0 1 + 19897 24608 12483 12490 23709 23709 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3277587890625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.01 1 24.653 24.153 25.153 3.6436 0 0 0 0.38417 1 2211 2211 0 0 1 + 19898 24608 12483 12490 23710 23710 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3292236328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.171 1 24.815 24.315 25.315 3.6436 0 0 0 0.38417 1 2255 2255 0 0 1 + 19899 24608 12483 12490 23711 23711 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3277282714844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.705 1 25.38 24.88 25.88 3.6749 0 0 0 0.38417 1 2399 2399 0 0 1 + 19900 24608 12483 12490 23712 23712 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.451 1 26.126 25.626 26.626 3.6749 0 0 0 0.38417 1 2611 2611 0 0 1 + 19901 24608 12483 12490 23713 23713 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.7841491699219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.474 1 26.149 25.649 26.649 3.6749 0 0 0 0.38417 1 2618 2618 0 0 1 + 19902 24608 12483 12490 23714 23714 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3282775878906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.66 1 26.364 25.864 26.864 3.7042 0 0 0 0.38417 1 2672 2672 0 0 1 + 19903 24608 12483 12490 23715 23715 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3280334472656 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.418 1 27.122 26.622 27.622 3.7042 0 0 0 0.38417 1 2891 2891 0 0 1 + 19904 24608 12483 12490 23716 23716 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.135 1 27.865 27.365 28.365 3.7298 0 0 0 0.38417 1 3105 3105 0 0 1 + 19905 24608 12483 12490 23717 23717 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.317 1 28.047 27.547 28.547 3.7298 0 0 0 0.38417 1 3156 3156 0 0 1 + 19906 24608 12483 12490 23718 23718 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.631 1 28.38 27.88 28.88 3.7495 0 0 0 0.38417 1 3253 3253 0 0 1 + 19907 24608 12483 12490 23719 23719 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32916259765625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.355 1 29.105 28.605 29.605 3.7495 0 0 0 0.38417 1 3464 3464 0 0 1 + 19908 24608 12483 12490 23720 23720 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3279724121094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.375 1 29.125 28.625 29.625 3.7495 0 0 0 0.38417 1 3470 3470 0 0 1 + 19909 24608 12483 12490 23721 23721 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.554 1 29.303 28.803 29.803 3.7495 0 0 0 0.38417 1 3524 3524 0 0 1 + 19910 24608 12483 12490 23722 23722 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3290710449219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.759 1 29.522 29.022 30.022 3.7624 0 0 0 0.38417 1 3585 3585 0 0 1 + 19911 24608 12483 12490 23723 23723 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 26.053 1 29.816 29.316 30.316 3.7624 0 0 0 0.38417 1 3669 3669 0 0 1 + 19912 24608 12483 12490 23724 23724 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 26.461 1 30.223 29.723 30.723 3.7624 0 0 0 0.38417 1 3788 3788 0 0 1 + 19913 24608 12483 12490 23725 23725 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32904052734375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.134 1 30.9 30.4 31.4 3.7662 0 0 0 0.38417 1 3988 3988 0 0 1 + 19914 24608 12483 12490 23726 23726 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.1 1 32.858 32.358 33.358 3.7578 0 0 0 0.38417 1 4574 4574 0 0 1 + 19915 24608 12483 12490 23727 23727 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.73577880859375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.146 1 32.904 32.404 33.404 3.7578 0 0 0 0.38417 1 4588 4588 0 0 1 + 19916 24608 12483 12490 23728 23728 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.604 1 33.362 32.862 33.862 3.7578 0 0 0 0.38417 1 4726 4726 0 0 1 + 19917 24608 12483 12490 23729 23729 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 35.313 1 38.989 38.489 39.489 3.6762 0 0 0 0.38417 1 6461 6461 0 0 1 + 19918 24608 12483 12490 23730 23730 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 41.337 1 45.009 44.509 45.509 3.6719 0 0 0 0.38417 1 8290 8290 0 0 1 + 19919 24608 12483 12490 23731 23731 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 44.529 1 48.224 47.724 48.724 3.6951 0 0 0 0.38417 1 9266 9266 0 0 1 + 19920 24608 12483 12490 23732 23732 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 44.709 1 48.409 47.909 48.909 3.6999 0 0 0 0.38417 1 9321 9321 0 0 1 + 19921 24608 12483 12490 23733 23733 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 46.284 1 49.984 49.484 50.484 3.6999 0 0 0 0.38417 1 9803 9803 0 0 1 + 19922 24608 12483 12490 23734 23734 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 48.855 1 52.514 52.014 53.014 3.6592 0 0 0 0.38417 1 10577 10577 0 0 1 + 19923 24608 12483 12490 23735 23735 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3288879394531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 49.164 1 52.823 52.323 53.323 3.6592 0 0 0 0.38417 1 10673 10673 0 0 1 + 19924 24608 12483 12490 23736 23736 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3275146484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 53.173 1 56.701 56.201 57.201 3.5278 0 0 0 0.38417 1 11891 11891 0 0 1 + 19925 24608 12483 12490 23737 23737 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 53.336 1 56.864 56.364 57.364 3.5278 0 0 0 0.38417 1 11941 11941 0 0 1 + 19926 24608 12483 12490 23738 23738 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3282775878906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 66.131 1 69.488 68.988 69.988 3.3576 0 0 0 0.38417 1 15821 15821 0 0 1 + 19927 24608 12483 12490 23739 23739 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.328857421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 70.026 1 73.397 72.897 73.897 3.3713 0 0 0 0.38417 1 17000 17000 0 0 1 + 19928 24608 12483 12490 23740 23740 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 84.553 1 88.119 87.619 88.619 3.5655 0 0 0 0.38417 1 21154 21154 0 0 1 + 19929 24608 12483 12490 23741 23741 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32879638671875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 86.314 1 89.929 89.429 90.429 3.6153 0 0 0 0.38417 1 21560 21560 0 0 1 + 19930 24608 12483 12490 23742 23742 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 86.503 1 90.118 89.618 90.618 3.6153 0 0 0 0.38417 1 21610 21610 0 0 1 + 19931 24608 12483 12490 23743 23743 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 88.229 1 91.885 91.385 92.385 3.6563 0 0 0 0.38417 1 22064 22064 0 0 1 + 19932 24608 12483 12490 23744 23744 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 88.448 1 92.104 91.604 92.604 3.6563 0 0 0 0.38417 1 22120 22120 0 0 1 + 19933 24608 12483 12490 23745 23745 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 88.745 1 92.401 91.901 92.901 3.6563 0 0 0 0.38417 1 22193 22193 0 0 1 + 19934 24608 12483 12490 23746 23746 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 93.039 1 96.76 96.26 97.26 3.7209 0 0 0 0.38417 1 23160 23160 0 0 1 + 19935 24608 12483 12490 23747 23747 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 93.88 1 97.616 97.116 98.116 3.736 0 0 0 0.38417 1 23340 23340 0 0 1 + 19936 24608 12483 12490 23748 23748 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.328857421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 94.03 1 97.766 97.266 98.266 3.736 0 0 0 0.38417 1 23371 23371 0 0 1 + 19937 24608 12483 12490 23749 23749 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 95.427 1 99.192 98.692 99.692 3.7648 0 0 0 0.38417 1 23689 23689 0 0 1 + 19938 24608 12483 12490 23750 23750 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 117.4 1 121 120.5 121.5 3.6036 0 0 0 0.38417 1 29103 29103 0 0 1 + 19939 24608 12483 12490 23751 23751 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 118.99 1 122.59 122.09 123.09 3.6036 0 0 0 0.38417 1 29548 29548 0 0 1 + 19940 24608 12483 12490 23752 23752 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3281555175781 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 14.587 1 17.974 17.474 18.474 3.3871 0 0 0 0.38417 1 603 603 0 0 1 + 19941 24608 12483 12490 23753 23753 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 15.556 1 18.942 18.442 19.442 3.3864 0 0 0 0.38417 1 840 840 0 0 1 + 19942 24608 12483 12490 23754 23754 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3279724121094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 15.881 1 19.268 18.768 19.768 3.3864 0 0 0 0.38417 1 922 922 0 0 1 + 19943 24608 12483 12490 23755 23755 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.007 1 19.393 18.893 19.893 3.3864 0 0 0 0.38417 1 953 953 0 0 1 + 19944 24608 12483 12490 23756 23756 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32794189453125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.136 1 19.523 19.023 20.023 3.3864 0 0 0 0.38417 1 981 981 0 0 1 + 19945 24608 12483 12490 23757 23757 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.531 1 19.918 19.418 20.418 3.3864 0 0 0 0.38417 1 1075 1075 0 0 1 + 19946 24608 12483 12490 23758 23758 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3277282714844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.123 1 20.51 20.01 21.01 3.387 0 0 0 0.38417 1 1220 1220 0 0 1 + 19947 24608 12483 12490 23759 23759 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.281 1 20.667 20.167 21.167 3.387 0 0 0 0.38417 1 1262 1262 0 0 1 + 19948 24608 12483 12490 23760 23760 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.399 1 20.786 20.286 21.286 3.387 0 0 0 0.38417 1 1294 1294 0 0 1 + 19949 24608 12483 12490 23761 23761 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3277587890625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.583 1 20.97 20.47 21.47 3.387 0 0 0 0.38417 1 1340 1340 0 0 1 + 19950 24608 12483 12490 23762 23762 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.722 1 21.109 20.609 21.609 3.387 0 0 0 0.38417 1 1376 1376 0 0 1 + 19951 24608 12483 12490 23763 23763 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.841 1 21.228 20.728 21.728 3.387 0 0 0 0.38417 1 1406 1406 0 0 1 + 19952 24608 12483 12490 23764 23764 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3280334472656 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.997 1 21.384 20.884 21.884 3.387 0 0 0 0.38417 1 1448 1448 0 0 1 + 19953 24608 12483 12490 23765 23765 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.847 1 22.236 21.736 22.736 3.3898 0 0 0 0.38417 1 1664 1664 0 0 1 + 19954 24608 12483 12490 23766 23766 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.004 1 22.394 21.894 22.894 3.3898 0 0 0 0.38417 1 1707 1707 0 0 1 + 19955 24608 12483 12490 23767 23767 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.027 1 23.424 22.924 23.924 3.3963 0 0 0 0.38417 1 2003 2003 0 0 1 + 19956 24608 12483 12490 23768 23768 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3280029296875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.319 1 23.726 23.226 24.226 3.4074 0 0 0 0.38417 1 2087 2087 0 0 1 + 19957 24608 12483 12490 23769 23769 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.811 1 27.276 26.776 27.776 3.4655 0 0 0 0.38417 1 3054 3054 0 0 1 + 19958 24608 12483 12490 23770 23770 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.047 1 27.512 27.012 28.012 3.4655 0 0 0 0.38417 1 3125 3125 0 0 1 + 19959 24608 12483 12490 23771 23771 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3291015625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.72 1 29.215 28.715 29.715 3.4945 0 0 0 0.38417 1 3614 3614 0 0 1 + 19960 24608 12483 12490 23772 23772 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3291015625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 26.066 1 29.561 29.061 30.061 3.4945 0 0 0 0.38417 1 3716 3716 0 0 1 + 19961 24608 12483 12490 23773 23773 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 26.26 1 29.755 29.255 30.255 3.4945 0 0 0 0.38417 1 3772 3772 0 0 1 + 19962 24608 12483 12490 23774 23774 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 28.653 1 32.152 31.652 32.652 3.4986 0 0 0 0.38417 1 4476 4476 0 0 1 + 19963 24608 12483 12490 23775 23775 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.241 1 32.733 32.233 33.233 3.4923 0 0 0 0.38417 1 4654 4654 0 0 1 + 19964 24608 12483 12490 23776 23776 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.2644348144531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 31.064 1 34.546 34.046 35.046 3.4821 0 0 0 0.38417 1 5210 5210 0 0 1 + 19965 24608 12483 12490 23777 23777 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3288879394531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 32.541 1 35.996 35.496 36.496 3.4547 0 0 0 0.38417 1 5650 5650 0 0 1 + 19966 24608 12483 12490 23778 23778 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 35.929 1 39.34 38.84 39.84 3.4114 0 0 0 0.38417 1 6682 6682 0 0 1 + 19967 24608 12483 12490 23779 23779 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32958984375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 46.467 1 49.819 49.319 50.319 3.3515 0 0 0 0.38417 1 9887 9887 0 0 1 + 19968 24608 12483 12490 23780 23780 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 59.631 1 62.904 62.404 63.404 3.2731 0 0 0 0.38417 1 13894 13894 0 0 1 + 19969 24608 12483 12490 23781 23781 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32879638671875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 65.33 1 68.586 68.086 69.086 3.2556 0 0 0 0.38417 1 15623 15623 0 0 1 + 19970 24608 12483 12490 23782 23782 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 94.923 1 98.395 97.895 98.895 3.472 0 0 0 0.38417 1 23380 23380 0 0 1 + 19971 24608 12483 12490 23783 23783 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.3275146484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 111.83 1 115.36 114.86 115.86 3.5226 0 0 0 0.38417 1 27233 27233 0 0 1 + 19972 24608 12483 12490 23784 23784 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 469.32867431640625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 111.85 1 115.37 114.87 115.87 3.5226 0 0 0 0.38417 1 27237 27237 0 0 1 + 19973 24608 12483 12490 23785 23785 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3279724121094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 14.797 1 18.167 17.667 18.667 3.3697 0 0 0 0.38417 1 632 632 0 0 1 + 19974 24608 12483 12490 23786 23786 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 15.514 1 18.88 18.38 19.38 3.3659 0 0 0 0.38417 1 808 808 0 0 1 + 19975 24608 12483 12490 23787 23787 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.068 1 19.43 18.93 19.93 3.3619 0 0 0 0.38417 1 940 940 0 0 1 + 19976 24608 12483 12490 23788 23788 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3281555175781 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.286 1 19.648 19.148 20.148 3.3619 0 0 0 0.38417 1 990 990 0 0 1 + 19977 24608 12483 12490 23789 23789 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.327880859375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.461 1 19.823 19.323 20.323 3.3619 0 0 0 0.38417 1 1031 1031 0 0 1 + 19978 24608 12483 12490 23790 23790 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3282775878906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.725 1 20.086 19.586 20.586 3.3619 0 0 0 0.38417 1 1093 1093 0 0 1 + 19979 24608 12483 12490 23791 23791 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32781982421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.845 1 20.207 19.707 20.707 3.3619 0 0 0 0.38417 1 1123 1123 0 0 1 + 19980 24608 12483 12490 23792 23792 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.278 1 22.629 22.129 23.129 3.3514 0 0 0 0.38417 1 1771 1771 0 0 1 + 19981 24608 12483 12490 23793 23793 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3282775878906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.412 1 22.764 22.264 23.264 3.3514 0 0 0 0.38417 1 1809 1809 0 0 1 + 19982 24608 12483 12490 23794 23794 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.611 1 22.963 22.463 23.463 3.3514 0 0 0 0.38417 1 1865 1865 0 0 1 + 19983 24608 12483 12490 23795 23795 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3275451660156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.669 1 23.021 22.521 23.521 3.3514 0 0 0 0.38417 1 1881 1881 0 0 1 + 19984 24608 12483 12490 23796 23796 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3289489746094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.953 1 23.304 22.804 23.804 3.3514 0 0 0 0.38417 1 1966 1966 0 0 1 + 19985 24608 12483 12490 23797 23797 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.221 1 23.572 23.072 24.072 3.3514 0 0 0 0.38417 1 2044 2044 0 0 1 + 19986 24608 12483 12490 23798 23798 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.517 1 23.867 23.367 24.367 3.3496 0 0 0 0.38417 1 2133 2133 0 0 1 + 19987 24608 12483 12490 23799 23799 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32928466796875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.713 1 24.063 23.563 24.563 3.3496 0 0 0 0.38417 1 2187 2187 0 0 1 + 19988 24608 12483 12490 23800 23800 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3289794921875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.903 1 24.253 23.753 24.753 3.3496 0 0 0 0.38417 1 2244 2244 0 0 1 + 19989 24608 12483 12490 23801 23801 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.149 1 24.499 23.999 24.999 3.3496 0 0 0 0.38417 1 2317 2317 0 0 1 + 19990 24608 12483 12490 23802 23802 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32818603515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.636 1 24.985 24.485 25.485 3.3496 0 0 0 0.38417 1 2453 2453 0 0 1 + 19991 24608 12483 12490 23803 23803 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.842 1 29.19 28.69 29.69 3.3478 0 0 0 0.38417 1 3693 3693 0 0 1 + 19992 24608 12483 12490 23804 23804 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32794189453125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.473 1 30.815 30.315 31.315 3.3422 0 0 0 0.38417 1 4174 4174 0 0 1 + 19993 24608 12483 12490 23805 23805 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3280944824219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.767 1 31.109 30.609 31.609 3.3422 0 0 0 0.38417 1 4263 4263 0 0 1 + 19994 24608 12483 12490 23806 23806 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 28.932 1 32.256 31.756 32.756 3.3235 0 0 0 0.38417 1 4606 4606 0 0 1 + 19995 24608 12483 12490 23807 23807 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.63 1 32.954 32.454 33.454 3.3235 0 0 0 0.38417 1 4816 4816 0 0 1 + 19996 24608 12483 12490 23808 23808 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 30.873 1 34.185 33.685 34.685 3.3116 0 0 0 0.38417 1 5187 5187 0 0 1 + 19997 24608 12483 12490 23809 23809 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 43.811 1 47.053 46.553 47.553 3.2419 0 0 0 0.38417 1 9127 9127 0 0 1 + 19998 24608 12483 12490 23810 23810 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3280334472656 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 52.076 1 55.282 54.782 55.782 3.2055 0 0 0 0.38417 1 11643 11643 0 0 1 + 19999 24608 12483 12490 23811 23811 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 71.078 1 74.289 73.789 74.789 3.2113 0 0 0 0.38417 1 17423 17423 0 0 1 + 20000 24608 12483 12490 23812 23812 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3276672363281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 71.351 1 74.57 74.07 75.07 3.2188 0 0 0 0.38417 1 17502 17502 0 0 1 + 20001 24608 12483 12490 23813 23813 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 72.216 1 75.434 74.934 75.934 3.2188 0 0 0 0.38417 1 17764 17764 0 0 1 + 20002 24608 12483 12490 23814 23814 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 72.586 1 75.813 75.313 76.313 3.2271 0 0 0 0.38417 1 17877 17877 0 0 1 + 20003 24608 12483 12490 23815 23815 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3289489746094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 73.913 1 77.149 76.649 77.649 3.2363 0 0 0 0.38417 1 18276 18276 0 0 1 + 20004 24608 12483 12490 23816 23816 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 76.266 1 79.524 79.024 80.024 3.2573 0 0 0 0.38417 1 18956 18956 0 0 1 + 20005 24608 12483 12490 23817 23817 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3289794921875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 77.104 1 80.373 79.873 80.873 3.269 0 0 0 0.38417 1 19188 19188 0 0 1 + 20006 24608 12483 12490 23818 23818 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 77.446 1 80.715 80.215 81.215 3.269 0 0 0 0.38417 1 19286 19286 0 0 1 + 20007 24608 12483 12490 23819 23819 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 90.159 1 93.557 93.057 94.057 3.3976 0 0 0 0.38417 1 22598 22598 0 0 1 + 20008 24608 12483 12490 23820 23820 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 91.367 1 94.768 94.268 95.268 3.401 0 0 0 0.38417 1 22856 22856 0 0 1 + 20009 24608 12483 12490 23821 23821 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 97.128 1 100.54 100.04 101.04 3.414 0 0 0 0.38417 1 24081 24081 0 0 1 + 20010 24608 12483 12490 23822 23822 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3289794921875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 97.489 1 100.91 100.41 101.41 3.4216 0 0 0 0.38417 1 24166 24166 0 0 1 + 20011 24608 12483 12490 23823 23823 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 97.62 1 101.04 100.54 101.54 3.4216 0 0 0 0.38417 1 24194 24194 0 0 1 + 20012 24608 12483 12490 23824 23824 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.3281555175781 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 98.295 1 101.73 101.23 102.23 3.4328 0 0 0 0.38417 1 24345 24345 0 0 1 + 20013 24608 12483 12490 23825 23825 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 98.471 1 101.9 101.4 102.4 3.4328 0 0 0 0.38417 1 24388 24388 0 0 1 + 20014 24608 12483 12490 23826 23826 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3282165527344 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 12.233 1 15.746 15.246 16.246 3.5124 0 0 0 0.38417 1 40 40 0 0 1 + 20015 24608 12483 12490 23827 23827 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 12.248 1 15.761 15.261 16.261 3.5124 0 0 0 0.38417 1 43 43 0 0 1 + 20016 24608 12483 12490 23828 23828 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.846 1 22.378 21.878 22.878 3.5313 0 0 0 0.38417 1 1332 1332 0 0 1 + 20017 24608 12483 12490 23829 23829 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.117 1 22.655 22.155 23.155 3.5378 0 0 0 0.38417 1 1394 1394 0 0 1 + 20018 24608 12483 12490 23830 23830 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3279113769531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.26 1 22.798 22.298 23.298 3.5378 0 0 0 0.38417 1 1430 1430 0 0 1 + 20019 24608 12483 12490 23831 23831 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.59 1 23.128 22.628 23.628 3.5378 0 0 0 0.38417 1 1513 1513 0 0 1 + 20020 24608 12483 12490 23832 23832 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.749 1 23.286 22.786 23.786 3.5378 0 0 0 0.38417 1 1551 1551 0 0 1 + 20021 24608 12483 12490 23833 23833 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.022 1 23.56 23.06 24.06 3.5378 0 0 0 0.38417 1 1619 1619 0 0 1 + 20022 24608 12483 12490 23834 23834 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.185 1 23.73 23.23 24.23 3.5454 0 0 0 0.38417 1 1657 1657 0 0 1 + 20023 24608 12483 12490 23835 23835 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.45 1 23.995 23.495 24.495 3.5454 0 0 0 0.38417 1 1724 1724 0 0 1 + 20024 24608 12483 12490 23836 23836 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3279724121094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.93 1 24.475 23.975 24.975 3.5454 0 0 0 0.38417 1 1840 1840 0 0 1 + 20025 24608 12483 12490 23837 23837 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.097 1 25.651 25.151 26.151 3.5533 0 0 0 0.38417 1 2112 2112 0 0 1 + 20026 24608 12483 12490 23838 23838 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.732 1 26.293 25.793 26.793 3.5605 0 0 0 0.38417 1 2261 2261 0 0 1 + 20027 24608 12483 12490 23839 23839 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.17 1 26.731 26.231 27.231 3.5605 0 0 0 0.38417 1 2375 2375 0 0 1 + 20028 24608 12483 12490 23840 23840 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3288879394531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.442 1 27.007 26.507 27.507 3.5655 0 0 0 0.38417 1 2447 2447 0 0 1 + 20029 24608 12483 12490 23841 23841 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3282165527344 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.609 1 27.174 26.674 27.674 3.5655 0 0 0 0.38417 1 2487 2487 0 0 1 + 20030 24608 12483 12490 23842 23842 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.757 1 27.322 26.822 27.822 3.5655 0 0 0 0.38417 1 2524 2524 0 0 1 + 20031 24608 12483 12490 23843 23843 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.895 1 27.461 26.961 27.961 3.5655 0 0 0 0.38417 1 2559 2559 0 0 1 + 20032 24608 12483 12490 23844 23844 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3291015625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.28 1 27.846 27.346 28.346 3.5655 0 0 0 0.38417 1 2659 2659 0 0 1 + 20033 24608 12483 12490 23845 23845 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.431 1 27.997 27.497 28.497 3.5655 0 0 0 0.38417 1 2696 2696 0 0 1 + 20034 24608 12483 12490 23846 23846 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.599 1 28.165 27.665 28.665 3.5667 0 0 0 0.38417 1 2738 2738 0 0 1 + 20035 24608 12483 12490 23847 23847 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32867431640625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.295 1 28.862 28.362 29.362 3.5667 0 0 0 0.38417 1 2924 2924 0 0 1 + 20036 24608 12483 12490 23848 23848 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32818603515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.478 1 31.041 30.541 31.541 3.5629 0 0 0 0.38417 1 3543 3543 0 0 1 + 20037 24608 12483 12490 23849 23849 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.01 1 32.56 32.06 33.06 3.5499 0 0 0 0.38417 1 3969 3969 0 0 1 + 20038 24608 12483 12490 23850 23850 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 34.999 1 38.513 38.013 39.013 3.5144 0 0 0 0.38417 1 5669 5669 0 0 1 + 20039 24608 12483 12490 23851 23851 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 35.729 1 39.239 38.739 39.739 3.5101 0 0 0 0.38417 1 5882 5882 0 0 1 + 20040 24608 12483 12490 23852 23852 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 38.226 1 41.731 41.231 42.231 3.5052 0 0 0 0.38417 1 6595 6595 0 0 1 + 20041 24608 12483 12490 23853 23853 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3289489746094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 49.408 1 52.932 52.432 53.432 3.5246 0 0 0 0.38417 1 9981 9981 0 0 1 + 20042 24608 12483 12490 23854 23854 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 57.317 1 60.812 60.312 61.312 3.4942 0 0 0 0.38417 1 12409 12409 0 0 1 + 20043 24608 12483 12490 23855 23855 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 59.724 1 63.204 62.704 63.704 3.4801 0 0 0 0.38417 1 13148 13148 0 0 1 + 20044 24608 12483 12490 23856 23856 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 62.269 1 65.732 65.232 66.232 3.4625 0 0 0 0.38417 1 13921 13921 0 0 1 + 20045 24608 12483 12490 23857 23857 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 68.566 1 72.018 71.518 72.518 3.4517 0 0 0 0.38417 1 15842 15842 0 0 1 + 20046 24608 12483 12490 23858 23858 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 69.16 1 72.615 72.115 73.115 3.4548 0 0 0 0.38417 1 16023 16023 0 0 1 + 20047 24608 12483 12490 23859 23859 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 74.262 1 77.752 77.252 78.252 3.49 0 0 0 0.38417 1 17545 17545 0 0 1 + 20048 24608 12483 12490 23860 23860 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 74.472 1 77.962 77.462 78.462 3.49 0 0 0 0.38417 1 17599 17599 0 0 1 + 20049 24608 12483 12490 23861 23861 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 76.044 1 79.543 79.043 80.043 3.4996 0 0 0 0.38417 1 18049 18049 0 0 1 + 20050 24608 12483 12490 23862 23862 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.6609191894531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 77.781 1 81.303 80.803 81.803 3.5221 0 0 0 0.38417 1 18527 18527 0 0 1 + 20051 24608 12483 12490 23863 23863 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3382263183594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 84.407 1 88.004 87.504 88.504 3.5973 0 0 0 0.38417 1 20206 20206 0 0 1 + 20052 24608 12483 12490 23864 23864 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 89.307 1 92.933 92.433 93.433 3.6255 0 0 0 0.38417 1 21441 21441 0 0 1 + 20053 24608 12483 12490 23865 23865 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3289489746094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 89.494 1 93.12 92.62 93.62 3.6255 0 0 0 0.38417 1 21494 21494 0 0 1 + 20054 24608 12483 12490 23866 23866 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 95.23 1 98.847 98.347 99.347 3.6167 0 0 0 0.38417 1 22931 22931 0 0 1 + 20055 24608 12483 12490 23867 23867 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 95.428 1 99.044 98.544 99.544 3.6167 0 0 0 0.38417 1 22981 22981 0 0 1 + 20056 24608 12483 12490 23868 23868 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3288879394531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 96.525 1 100.14 99.638 100.64 3.6124 0 0 0 0.38417 1 23257 23257 0 0 1 + 20057 24608 12483 12490 23869 23869 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.328857421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 97.313 1 100.92 100.42 101.42 3.6088 0 0 0 0.38417 1 23473 23473 0 0 1 + 20058 24608 12483 12490 23870 23870 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 97.437 1 101.05 100.55 101.55 3.6088 0 0 0 0.38417 1 23505 23505 0 0 1 + 20059 24608 12483 12490 23871 23871 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 98.087 1 101.69 101.19 102.19 3.6065 0 0 0 0.38417 1 23661 23661 0 0 1 + 20060 24608 12483 12490 23872 23872 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285217285156 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 112.36 1 115.99 115.49 116.49 3.6321 0 0 0 0.38417 1 27264 27264 0 0 1 + 20061 24608 12483 12490 23873 23873 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3291931152344 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 113.68 1 117.32 116.82 117.82 3.6314 0 0 0 0.38417 1 27622 27622 0 0 1 + 20062 24608 12483 12490 23874 23874 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 113.82 1 117.45 116.95 117.95 3.6314 0 0 0 0.38417 1 27658 27658 0 0 1 + 20063 24608 12483 12490 23875 23875 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 114.01 1 117.64 117.14 118.14 3.6301 0 0 0 0.38417 1 27708 27708 0 0 1 + 20064 24608 12483 12490 23876 23876 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 114.93 1 118.56 118.06 119.06 3.6301 0 0 0 0.38417 1 27950 27950 0 0 1 + 20065 24608 12483 12490 23877 23877 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32879638671875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 116.2 1 119.82 119.32 120.32 3.6254 0 0 0 0.38417 1 28286 28286 0 0 1 + 20066 24608 12483 12490 23878 23878 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 116.86 1 120.49 119.99 120.99 3.6254 0 0 0 0.38417 1 28470 28470 0 0 1 + 20067 24608 12483 12490 23879 23879 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 118.62 1 122.24 121.74 122.74 3.6189 0 0 0 0.38417 1 28936 28936 0 0 1 + 20068 24608 12483 12490 23880 23880 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3288879394531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 119.48 1 123.1 122.6 123.6 3.6189 0 0 0 0.38417 1 29162 29162 0 0 1 + 20069 24608 12483 12490 23881 23881 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 119.53 1 123.15 122.65 123.65 3.6189 0 0 0 0.38417 1 29178 29178 0 0 1 + 20070 24608 12483 12490 23882 23882 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 12.648 1 16.303 15.803 16.803 3.6552 0 0 0 0.38417 1 115 115 0 0 1 + 20071 24608 12483 12490 23883 23883 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.231 1 21.882 21.382 22.382 3.6509 0 0 0 0.38417 1 1188 1188 0 0 1 + 20072 24608 12483 12490 23884 23884 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.423 1 22.074 21.574 22.574 3.6509 0 0 0 0.38417 1 1231 1231 0 0 1 + 20073 24608 12483 12490 23885 23885 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.548 1 22.199 21.699 22.699 3.6509 0 0 0 0.38417 1 1261 1261 0 0 1 + 20074 24608 12483 12490 23886 23886 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.689 1 22.34 21.84 22.84 3.6509 0 0 0 0.38417 1 1292 1292 0 0 1 + 20075 24608 12483 12490 23887 23887 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.81 1 22.461 21.961 22.961 3.6509 0 0 0 0.38417 1 1323 1323 0 0 1 + 20076 24608 12483 12490 23888 23888 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3277282714844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.955 1 22.606 22.106 23.106 3.6509 0 0 0 0.38417 1 1359 1359 0 0 1 + 20077 24608 12483 12490 23889 23889 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.103 1 22.754 22.254 23.254 3.6509 0 0 0 0.38417 1 1399 1399 0 0 1 + 20078 24608 12483 12490 23890 23890 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32781982421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.357 1 23.007 22.507 23.507 3.6497 0 0 0 0.38417 1 1463 1463 0 0 1 + 20079 24608 12483 12490 23891 23891 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3288269042969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.85 1 23.5 23 24 3.6497 0 0 0 0.38417 1 1594 1594 0 0 1 + 20080 24608 12483 12490 23892 23892 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.185 1 23.835 23.335 24.335 3.6497 0 0 0 0.38417 1 1687 1687 0 0 1 + 20081 24608 12483 12490 23893 23893 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.348 1 23.996 23.496 24.496 3.648 0 0 0 0.38417 1 1730 1730 0 0 1 + 20082 24608 12483 12490 23894 23894 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.52 1 24.168 23.668 24.668 3.648 0 0 0 0.38417 1 1780 1780 0 0 1 + 20083 24608 12483 12490 23895 23895 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.327880859375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.642 1 24.29 23.79 24.79 3.648 0 0 0 0.38417 1 1812 1812 0 0 1 + 20084 24608 12483 12490 23896 23896 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.803 1 24.451 23.951 24.951 3.648 0 0 0 0.38417 1 1853 1853 0 0 1 + 20085 24608 12483 12490 23897 23897 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3292236328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.471 1 25.117 24.617 25.617 3.6459 0 0 0 0.38417 1 2034 2034 0 0 1 + 20086 24608 12483 12490 23898 23898 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.328857421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.824 1 25.47 24.97 25.97 3.6459 0 0 0 0.38417 1 2127 2127 0 0 1 + 20087 24608 12483 12490 23899 23899 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.242 1 25.888 25.388 26.388 3.6459 0 0 0 0.38417 1 2239 2239 0 0 1 + 20088 24608 12483 12490 23900 23900 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 22.933 1 26.576 26.076 27.076 3.6432 0 0 0 0.38417 1 2418 2418 0 0 1 + 20089 24608 12483 12490 23901 23901 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.207 1 26.85 26.35 27.35 3.6432 0 0 0 0.38417 1 2492 2492 0 0 1 + 20090 24608 12483 12490 23902 23902 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32818603515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.476 1 27.12 26.62 27.62 3.6432 0 0 0 0.38417 1 2567 2567 0 0 1 + 20091 24608 12483 12490 23903 23903 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32867431640625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.882 1 27.522 27.022 28.022 3.6397 0 0 0 0.38417 1 2680 2680 0 0 1 + 20092 24608 12483 12490 23904 23904 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3282165527344 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.168 1 27.808 27.308 28.308 3.6397 0 0 0 0.38417 1 2764 2764 0 0 1 + 20093 24608 12483 12490 23905 23905 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3282775878906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.783 1 29.416 28.916 29.916 3.6332 0 0 0 0.38417 1 3186 3186 0 0 1 + 20094 24608 12483 12490 23906 23906 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3283996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.918 1 29.551 29.051 30.051 3.6332 0 0 0 0.38417 1 3225 3225 0 0 1 + 20095 24608 12483 12490 23907 23907 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 26.19 1 29.823 29.323 30.323 3.6332 0 0 0 0.38417 1 3303 3303 0 0 1 + 20096 24608 12483 12490 23908 23908 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3289489746094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 26.409 1 30.043 29.543 30.543 3.6332 0 0 0 0.38417 1 3358 3358 0 0 1 + 20097 24608 12483 12490 23909 23909 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 28.965 1 32.597 32.097 33.097 3.6316 0 0 0 0.38417 1 4053 4053 0 0 1 + 20098 24608 12483 12490 23910 23910 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3280029296875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.485 1 33.116 32.616 33.616 3.6316 0 0 0 0.38417 1 4196 4196 0 0 1 + 20099 24608 12483 12490 23911 23911 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 37.797 1 41.514 41.014 42.014 3.7164 0 0 0 0.38417 1 6510 6510 0 0 1 + 20100 24608 12483 12490 23912 23912 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.7658996582031 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 40.498 1 44.239 43.739 44.739 3.7413 0 0 0 0.38417 1 7295 7295 0 0 1 + 20101 24608 12483 12490 23913 23913 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 45.904 1 49.662 49.162 50.162 3.7579 0 0 0 0.38417 1 8911 8911 0 0 1 + 20102 24608 12483 12490 23914 23914 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3292541503906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 54.298 1 57.88 57.38 58.38 3.5817 0 0 0 0.38417 1 11463 11463 0 0 1 + 20103 24608 12483 12490 23915 23915 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.7710266113281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 56.076 1 59.609 59.109 60.109 3.5333 0 0 0 0.38417 1 12009 12009 0 0 1 + 20104 24608 12483 12490 23916 23916 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 57.904 1 61.418 60.918 61.918 3.5142 0 0 0 0.38417 1 12564 12564 0 0 1 + 20105 24608 12483 12490 23917 23917 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32769775390625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 58.565 1 62.064 61.564 62.564 3.4987 0 0 0 0.38417 1 12767 12767 0 0 1 + 20106 24608 12483 12490 23918 23918 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32916259765625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 63.545 1 67.02 66.52 67.52 3.4743 0 0 0 0.38417 1 14296 14296 0 0 1 + 20107 24608 12483 12490 23919 23919 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.7155456542969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 64.63 1 68.11 67.61 68.61 3.4792 0 0 0 0.38417 1 14627 14627 0 0 1 + 20108 24608 12483 12490 23920 23920 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3285827636719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 64.683 1 68.162 67.662 68.662 3.4792 0 0 0 0.38417 1 14643 14643 0 0 1 + 20109 24608 12483 12490 23921 23921 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.326904296875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 65.444 1 68.923 68.423 69.423 3.4792 0 0 0 0.38417 1 14877 14877 0 0 1 + 20110 24608 12483 12490 23922 23922 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3288879394531 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 66.129 1 69.616 69.116 70.116 3.4866 0 0 0 0.38417 1 15085 15085 0 0 1 + 20111 24608 12483 12490 23923 23923 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 68.991 1 72.513 72.013 73.013 3.5216 0 0 0 0.38417 1 15951 15951 0 0 1 + 20112 24608 12483 12490 23924 23924 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 69.824 1 73.346 72.846 73.846 3.5216 0 0 0 0.38417 1 16201 16201 0 0 1 + 20113 24608 12483 12490 23925 23925 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 71.292 1 74.842 74.342 75.342 3.5505 0 0 0 0.38417 1 16623 16623 0 0 1 + 20114 24608 12483 12490 23926 23926 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 72.094 1 75.644 75.144 76.144 3.5505 0 0 0 0.38417 1 16855 16855 0 0 1 + 20115 24608 12483 12490 23927 23927 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32928466796875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 75.069 1 78.659 78.159 79.159 3.59 0 0 0 0.38417 1 17692 17692 0 0 1 + 20116 24608 12483 12490 23928 23928 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32879638671875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 77.629 1 81.251 80.751 81.751 3.6222 0 0 0 0.38417 1 18383 18383 0 0 1 + 20117 24608 12483 12490 23929 23929 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 87.485 1 91.213 90.713 91.713 3.7279 0 0 0 0.38417 1 20816 20816 0 0 1 + 20118 24608 12483 12490 23930 23930 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 88.129 1 91.857 91.357 92.357 3.7279 0 0 0 0.38417 1 20979 20979 0 0 1 + 20119 24608 12483 12490 23931 23931 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32867431640625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 94.959 1 98.74 98.24 99.24 3.7804 0 0 0 0.38417 1 22575 22575 0 0 1 + 20120 24608 12483 12490 23932 23932 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 95.304 1 99.084 98.584 99.584 3.7804 0 0 0 0.38417 1 22655 22655 0 0 1 + 20121 24608 12483 12490 23933 23933 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 98.949 1 102.72 102.22 103.22 3.7707 0 0 0 0.38417 1 23504 23504 0 0 1 + 20122 24608 12483 12490 23934 23934 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 114.64 1 118.3 117.8 118.8 3.6616 0 0 0 0.38417 1 27410 27410 0 0 1 + 20123 24608 12483 12490 23935 23935 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3280944824219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 12.7 1 16.231 15.731 16.731 3.531 0 0 0 0.38417 1 122 122 0 0 1 + 20124 24608 12483 12490 23936 23936 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3278503417969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 15.994 1 19.542 19.042 20.042 3.5486 0 0 0 0.38417 1 709 709 0 0 1 + 20125 24608 12483 12490 23937 23937 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3282775878906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.132 1 19.68 19.18 20.18 3.5486 0 0 0 0.38417 1 735 735 0 0 1 + 20126 24608 12483 12490 23938 23938 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.801 1 20.35 19.85 20.85 3.5486 0 0 0 0.38417 1 867 867 0 0 1 + 20127 24608 12483 12490 23939 23939 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3280944824219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 16.95 1 20.499 19.999 20.999 3.5486 0 0 0 0.38417 1 897 897 0 0 1 + 20128 24608 12483 12490 23940 23940 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32769775390625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.274 1 20.838 20.338 21.338 3.5637 0 0 0 0.38417 1 957 957 0 0 1 + 20129 24608 12483 12490 23941 23941 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.423 1 20.987 20.487 21.487 3.5637 0 0 0 0.38417 1 989 989 0 0 1 + 20130 24608 12483 12490 23942 23942 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32818603515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 17.549 1 21.112 20.612 21.612 3.5637 0 0 0 0.38417 1 1017 1017 0 0 1 + 20131 24608 12483 12490 23943 23943 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.327880859375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.111 1 21.674 21.174 22.174 3.5637 0 0 0 0.38417 1 1143 1143 0 0 1 + 20132 24608 12483 12490 23944 23944 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3280944824219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.229 1 21.816 21.316 22.316 3.5874 0 0 0 0.38417 1 1170 1170 0 0 1 + 20133 24608 12483 12490 23945 23945 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32806396484375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.362 1 21.949 21.449 22.449 3.5874 0 0 0 0.38417 1 1200 1200 0 0 1 + 20134 24608 12483 12490 23946 23946 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 18.576 1 22.163 21.663 22.663 3.5874 0 0 0 0.38417 1 1249 1249 0 0 1 + 20135 24608 12483 12490 23947 23947 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.328369140625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.087 1 22.675 22.175 23.175 3.5874 0 0 0 0.38417 1 1377 1377 0 0 1 + 20136 24608 12483 12490 23948 23948 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3293151855469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.237 1 22.858 22.358 23.358 3.6215 0 0 0 0.38417 1 1417 1417 0 0 1 + 20137 24608 12483 12490 23949 23949 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3277282714844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.276 1 22.897 22.397 23.397 3.6215 0 0 0 0.38417 1 1426 1426 0 0 1 + 20138 24608 12483 12490 23950 23950 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.429 1 23.05 22.55 23.55 3.6215 0 0 0 0.38417 1 1464 1464 0 0 1 + 20139 24608 12483 12490 23951 23951 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32867431640625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 19.787 1 23.409 22.909 23.909 3.6215 0 0 0 0.38417 1 1563 1563 0 0 1 + 20140 24608 12483 12490 23952 23952 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.06 1 23.681 23.181 24.181 3.6215 0 0 0 0.38417 1 1635 1635 0 0 1 + 20141 24608 12483 12490 23953 23953 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.298 1 23.92 23.42 24.42 3.6215 0 0 0 0.38417 1 1699 1699 0 0 1 + 20142 24608 12483 12490 23954 23954 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3280334472656 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.579 1 24.246 23.746 24.746 3.6667 0 0 0 0.38417 1 1778 1778 0 0 1 + 20143 24608 12483 12490 23955 23955 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32794189453125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 20.966 1 24.633 24.133 25.133 3.6667 0 0 0 0.38417 1 1890 1890 0 0 1 + 20144 24608 12483 12490 23956 23956 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.391 1 25.057 24.557 25.557 3.6667 0 0 0 0.38417 1 1999 1999 0 0 1 + 20145 24608 12483 12490 23957 23957 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3278503417969 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.543 1 25.258 24.758 25.758 3.7144 0 0 0 0.38417 1 2043 2043 0 0 1 + 20146 24608 12483 12490 23958 23958 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3282470703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 21.778 1 25.493 24.993 25.993 3.7144 0 0 0 0.38417 1 2109 2109 0 0 1 + 20147 24608 12483 12490 23959 23959 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.116 1 26.867 26.367 27.367 3.7507 0 0 0 0.38417 1 2475 2475 0 0 1 + 20148 24608 12483 12490 23960 23960 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.511 1 27.262 26.762 27.762 3.7507 0 0 0 0.38417 1 2586 2586 0 0 1 + 20149 24608 12483 12490 23961 23961 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32855224609375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 23.954 1 27.723 27.223 28.223 3.769 0 0 0 0.38417 1 2704 2704 0 0 1 + 20150 24608 12483 12490 23962 23962 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3284606933594 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.084 1 27.853 27.353 28.353 3.769 0 0 0 0.38417 1 2737 2737 0 0 1 + 20151 24608 12483 12490 23963 23963 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 24.302 1 28.071 27.571 28.571 3.769 0 0 0 0.38417 1 2791 2791 0 0 1 + 20152 24608 12483 12490 23964 23964 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 25.592 1 29.361 28.861 29.861 3.769 0 0 0 0.38417 1 3135 3135 0 0 1 + 20153 24608 12483 12490 23965 23965 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.002 1 30.758 30.258 31.258 3.7555 0 0 0 0.38417 1 3491 3491 0 0 1 + 20154 24608 12483 12490 23966 23966 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3284912109375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.329 1 31.084 30.584 31.584 3.7555 0 0 0 0.38417 1 3574 3574 0 0 1 + 20155 24608 12483 12490 23967 23967 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32861328125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 27.811 1 31.566 31.066 32.066 3.7555 0 0 0 0.38417 1 3699 3699 0 0 1 + 20156 24608 12483 12490 23968 23968 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 29.022 1 32.75 32.25 33.25 3.7286 0 0 0 0.38417 1 4021 4021 0 0 1 + 20157 24608 12483 12490 23969 23969 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32818603515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 34.368 1 38.048 37.548 38.548 3.6797 0 0 0 0.38417 1 5452 5452 0 0 1 + 20158 24608 12483 12490 23970 23970 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3286437988281 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 44.09 1 47.729 47.229 48.229 3.6385 0 0 0 0.38417 1 8285 8285 0 0 1 + 20159 24608 12483 12490 23971 23971 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 45.956 1 49.593 49.093 50.093 3.6369 0 0 0 0.38417 1 8857 8857 0 0 1 + 20160 24608 12483 12490 23972 23972 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.77069091796875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 53.124 1 56.708 56.208 57.208 3.5836 0 0 0 0.38417 1 11040 11040 0 0 1 + 20161 24608 12483 12490 23973 23973 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 56.156 1 59.711 59.211 60.211 3.5554 0 0 0 0.38417 1 11969 11969 0 0 1 + 20162 24608 12483 12490 23974 23974 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3292541503906 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 57.366 1 60.898 60.398 61.398 3.5317 0 0 0 0.38417 1 12334 12334 0 0 1 + 20163 24608 12483 12490 23975 23975 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 57.548 1 61.08 60.58 61.58 3.5317 0 0 0 0.38417 1 12389 12389 0 0 1 + 20164 24608 12483 12490 23976 23976 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287658691406 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 58.131 1 61.662 61.162 62.162 3.5317 0 0 0 0.38417 1 12569 12569 0 0 1 + 20165 24608 12483 12490 23977 23977 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32843017578125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 60.803 1 64.316 63.816 64.816 3.5129 0 0 0 0.38417 1 13385 13385 0 0 1 + 20166 24608 12483 12490 23978 23978 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3291320800781 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 65.831 1 69.339 68.839 69.839 3.5077 0 0 0 0.38417 1 14906 14906 0 0 1 + 20167 24608 12483 12490 23979 23979 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32879638671875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 72.016 1 75.543 75.043 76.043 3.5266 0 0 0 0.38417 1 16760 16760 0 0 1 + 20168 24608 12483 12490 23980 23980 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3383483886719 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 84.423 1 88.151 87.651 88.651 3.7281 0 0 0 0.38417 1 20032 20032 0 0 1 + 20169 24608 12483 12490 23981 23981 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3378601074219 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 84.55 1 88.3 87.8 88.8 3.7494 0 0 0 0.38417 1 20062 20062 0 0 1 + 20170 24608 12483 12490 23982 23982 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287048339844 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 84.628 1 88.377 87.877 88.877 3.7494 0 0 0 0.38417 1 20083 20083 0 0 1 + 20171 24608 12483 12490 23983 23983 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32891845703125 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 87.361 1 91.151 90.651 91.651 3.7905 0 0 0 0.38417 1 20729 20729 0 0 1 + 20172 24608 12483 12490 23984 23984 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3283386230469 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 87.847 1 91.657 91.157 92.157 3.8104 0 0 0 0.38417 1 20847 20847 0 0 1 + 20173 24608 12483 12490 23985 23985 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.328857421875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 88.491 1 92.302 91.802 92.802 3.8104 0 0 0 0.38417 1 21004 21004 0 0 1 + 20174 24608 12483 12490 23986 23986 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32830810546875 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 94.649 1 98.551 98.051 99.051 3.9016 0 0 0 0.38417 1 22428 22428 0 0 1 + 20175 24608 12483 12490 23987 23987 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287353515625 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 96.193 1 100.1 99.601 100.6 3.9084 0 0 0 0.38417 1 22795 22795 0 0 1 + 20176 24608 12483 12490 23988 23988 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.32904052734375 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 97.001 1 100.91 100.41 101.41 3.9084 0 0 0 0.38417 1 22993 22993 0 0 1 + 20177 24608 12483 12490 23989 23989 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3279724121094 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 116.83 1 120.46 119.96 120.96 3.6312 0 0 0 0.38417 1 27805 27805 0 0 1 + 20178 24608 12483 12490 23990 23990 0.279389961581046 KYAKKKKKKKK 11 Unmodified _KYAKKKKKKKK_ 0 0 0 REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense REV__L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 469.3281555175781 3 469.329168 1404.96567 NaN NaN NaN NaN NaN NaN NaN 117.52 1 121.13 120.63 121.63 3.6124 0 0 0 0.38417 1 27957 27957 0 0 1 + 20179 24608 12483 12490 23991 23991 0.279389961581046 KYALLLQEL 9 Unmodified _KYALLLQEL_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4 ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MSMS UPN48_class_I_Rep_1 5 545.8289794921875 2 545.828975 1089.6434 NaN NaN NaN NaN NaN NaN NaN 68.952 1 72.407 71.907 72.907 3.4548 0 0 0 0.092202 1 15959 15959 26.268 2.2476 1 20180 5285 12484 12491 23992 23992 0.10216059688264068 KYALLLQEL 9 Unmodified _KYALLLQEL_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4 ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 545.8289184570312 2 545.828975 1089.6434 0.48893 0.00026687 -0.096704 -5.2784E-05 0.39223 0.00021409 545.8289712018567 68.885 0.28878 72.393 72.25 72.538 3.5083 25 17 2 0 0 0 0.13455 3 15924 15899;15924;15929 27.223 4.4483 1 49113 20181 5285 12484 12491 23993;23994;23995 23994 0.10216059688264068 KYALLLQEL 9 Unmodified _KYALLLQEL_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4 ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 545.8289794921875 2 545.828975 1089.6434 0.53524 0.00029215 -0.030092 -1.6425E-05 0.50515 0.00027573 545.8289894303995 68.783 0.38284 72.292 72.074 72.456 3.5094 34 27 2 0 0 0 0.20317 1 15807 15807 20.415 2.2682 1 151440 20182 5285 12484 12491 23996 23996 0.10216059688264068 KYANTLFPGF 10 Unmodified _KYANTLFPGF_ 0 0 0 REV__L1ME2z_dup4366|chr10:101677080-101677639:+|1.4389643099481015|0.4299418400808139|1.74|151.0|22|1|anti-sense REV__L1ME2z_dup4366|chr10:101677080-101677639:+|1.4389643099481015|0.4299418400808139|1.74|151.0|22|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.3037109375 2 579.303124 1156.5917 0.39827 0.00023072 -0.23256 -0.00013473 0.16571 9.5996E-05 579.3030832260833 48.722 0.72895 52.439 52.156 52.885 3.7175 88 50 2 0 0 0 0.56189 1 9885 9885 2.4985 0.65425 1 191960 + 20183 27924 12485 12492 23997 23997 0.0196631599437751 KYANTLFPGF 10 Unmodified _KYANTLFPGF_ 0 0 0 REV__L1ME2z_dup4366|chr10:101677080-101677639:+|1.4389643099481015|0.4299418400808139|1.74|151.0|22|1|anti-sense REV__L1ME2z_dup4366|chr10:101677080-101677639:+|1.4389643099481015|0.4299418400808139|1.74|151.0|22|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.3029174804688 2 579.303124 1156.5917 0.39291 0.00022762 0.22573 0.00013077 0.61865 0.00035838 579.3031681927782 48.957 0.802 52.586 52.153 52.955 3.6291 129 61 3 0 0 0 0.3776 1 9793 9793 21.537 1.0834 1 299430 + 20184 27924 12485 12492 23998 23998 0.0196631599437751 KYAPRFNGF 9 Unmodified _KYAPRFNGF_ 0 0 0 ENSG00000170832.13,USP32,chr17,-,I36.1,60185934,60190562|38|7.6|3|intron;ENSG00000170832|ENST00000300896|USP32 ENSG00000170832.13,USP32,chr17,-,I36.1,60185934,60190562|38|7.6|3|intron ENSG00000170832.13,USP32,chr17,-,I36.1,60185934,60190562|38|7.6|3|intron MSMS UPN48_class_I_Rep_1 5 550.2882690429688 2 550.287808 1098.56106 NaN NaN NaN NaN NaN NaN NaN 40.625 1 44.13 43.63 44.63 3.5048 0 0 0 0.38639 1 7312 7312 3.9444 0 1 20185 4490 12486 12493 23999 23999 0.015725823999900967 KYAPSGFYI 9 Unmodified _KYAPSGFYI_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS UPN48_class_I_Rep_1 5 523.2714233398438 2 523.271293 1044.52803 0.31777 0.00016628 0.68842 0.00036023 1.0062 0.00052651 523.2716152148136 54.022 0.56326 57.536 57.289 57.852 3.5143 68 40 2 0 0 0 0.37599 2 11383 11383;11470 9.3831 4.1525 1 189230 20186 1084 12487 12494 24000;24001 24000 0.007549555572722966 KYAPSGFYI 9 Unmodified _KYAPSGFYI_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS UPN48_class_I_Rep_2 6 523.2716674804688 2 523.271293 1044.52803 0.46878 0.0002453 0.84021 0.00043966 1.309 0.00068496 523.2717104736946 53.983 0.54105 57.564 57.284 57.825 3.5817 69 37 2 0 0 0 0.37599 1 11389 11389 9.3831 4.1525 1 145870 20187 1084 12487 12494 24002 24002 0.007549555572722966 KYAPSGFYI 9 Unmodified _KYAPSGFYI_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS UPN48_class_I_Rep_3 7 523.271484375 2 523.271293 1044.52803 0.27048 0.00014154 0.95539 0.00049993 1.2259 0.00064146 523.2717239354935 54.004 0.59219 57.583 57.317 57.91 3.5797 75 40 2 0 0 0 0.37599 1 11340 11340 9.3831 0.78985 1 148640 20188 1084 12487 12494 24003 24003 0.007549555572722966 KYAQKLKER 9 Unmodified _KYAQKLKER_ 0 0 0 ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B MSMS UPN48_class_I_Rep_2 6 582.3510131835938 2 582.348397 1162.68224 NaN NaN NaN NaN NaN NaN NaN 52.94 1 56.549 56.049 57.049 3.6098 0 0 0 0.37891 1 11048 11048 5.7319 0.97584 1 20189 891 12488 12495 24004 24004 0.107407850426398 KYDEGLYRF 9 Unmodified _KYDEGLYRF_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MSMS UPN48_class_I_Rep_1 5 595.7950439453125 2 595.795663 1189.57677 NaN NaN NaN NaN NaN NaN NaN 43.861 1 47.371 46.871 47.871 3.5103 0 0 0 0.38073 1 8280 8280 5.2969 2.3016 1 20190 5486 12489 12496 24005 24005 -0.010431758736331176 KYDEIFYNL 9 Unmodified _KYDEIFYNL_ 0 0 0 ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2 ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENST00000540884.1_1_19:48232905-48244686:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 603.30078125 2 602.797872 1203.58119 0.5184 0.00031249 1.1231 0.00067698 1.6415 0.00098947 602.7974060764799 65.264 1.1408 68.718 68.245 69.386 3.4541 174 85 3 0 0 0 0.01093 9 14863 14715;14761;14764;14775;14781;14823;14863;14870;14907 69.338 38.635 1 518170 20191 819 12490 12497 24006;24007;24008;24009;24010;24011;24012;24013;24014 24012 -0.012457114507014921 KYDEIFYNL 9 Unmodified _KYDEIFYNL_ 0 0 0 ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2 ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENST00000540884.1_1_19:48232905-48244686:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 603.3013916015625 2 602.797872 1203.58119 0.51769 0.00031206 0.083954 5.0608E-05 0.60164 0.00036267 602.797312350164 65.152 1.3524 68.631 67.984 69.336 3.4792 151 96 2 0 0 0 0.11648 6 14744 14693;14705;14744;14754;14784;14836 30.703 14.138 1 668080 20192 819 12490 12497 24015;24016;24017;24018;24019;24020 24017 -0.012457114507014921 KYDEIFYNL 9 Unmodified _KYDEIFYNL_ 0 0 0 ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2 ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENST00000540884.1_1_19:48232905-48244686:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 602.7974853515625 2 602.797872 1203.58119 0.57456 0.00034634 -0.028905 -1.7424E-05 0.54565 0.00032892 602.7971869488871 64.889 1.0775 68.397 68.089 69.167 3.5077 124 78 2 0 0 0 0.11648 7 14643 14562;14580;14594;14625;14643;14683;14737 30.703 13.591 1 424210 20193 819 12490 12497 24021;24022;24023;24024;24025;24026;24027 24025 -0.012457114507014921 KYEEERRKVVR 11 Unmodified _KYEEERRKVVR_ 0 0 0 ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 MULTI-MSMS UPN48_class_I_Rep_2 6 498.28533935546875 3 497.951196 1490.83176 0.3548 0.00017667 -0.35101 -0.00017478 0.0037887 1.8866E-06 497.95101281816784 21.087 0.61903 24.735 24.285 24.904 3.648 88 69 2 0 0 0 0.68132 1 1931 1931 0.40827 0 1 95095 20194 5433 12491 12498 24028 24028 0.10597685594575523 KYEELFPAF 9 Unmodified _KYEELFPAF_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS UPN48_class_I_Rep_1 5 572.289794921875 2 572.289682 1142.56481 0.44958 0.00025729 0.052743 3.0184E-05 0.50233 0.00028748 572.28961915942 69.276 1.1501 72.731 72.349 73.499 3.4548 311 85 5 0 0 0 0.0053074 7 16090 16006;16047;16090;16127;16166;16206;16253 79.596 47.291 1 3394100 20195 1734 12492 12499 24029;24030;24031;24032;24033;24034;24035 24031 -0.0007679261682369543 KYEELFPAF 9 Unmodified _KYEELFPAF_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS UPN48_class_I_Rep_2 6 572.2899169921875 2 572.289682 1142.56481 0.48382 0.00027689 0.064211 3.6747E-05 0.54803 0.00031363 572.2896267473999 69.195 1.3283 72.717 72.211 73.539 3.5216 372 101 5 0 0 0 0.0078401 9 16000 15921;15960;16000;16038;16079;16116;16153;16191;16240 96.367 49.446 1 3189600 20196 1734 12492 12499 24036;24037;24038;24039;24040;24041;24042;24043;24044 24038 -0.0007679261682369543 KYEELFPAF 9 Unmodified _KYEELFPAF_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS UPN48_class_I_Rep_3 7 572.2899780273438 2 572.289682 1142.56481 0.52946 0.000303 -0.091902 -5.2594E-05 0.43756 0.00025041 572.28957810499 69.122 1.442 72.632 72.143 73.585 3.5094 324 111 5 0 0 0 0.0053074 8 15911 15830;15869;15911;15955;15994;16032;16076;16160 82.529 47.291 1 2894700 20197 1734 12492 12499 24045;24046;24047;24048;24049;24050;24051;24052 24047 -0.0007679261682369543 KYERAVLFTL 10 Unmodified _KYERAVLFTL_ 0 0 0 REV__L1M5_dup31303|chrX:47460275-47460980:+|1.265634191297523|0.1083218782966039|3.55|151.0|13|2|sense REV__L1M5_dup31303|chrX:47460275-47460980:+|1.265634191297523|0.1083218782966039|3.55|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 620.78466796875 2 620.358431 1238.70231 NaN NaN NaN NaN NaN NaN NaN 73.504 1 76.89 76.39 77.39 3.3861 0 0 0 0.53105 1 18051 18051 1.4819 0 1 + 20198 24653 12493 12500 24053 24053 0.09250535982596375 KYERYLYC 8 Unmodified _KYERYLYC_ 0 0 0 L1ME1_dup30146|chr21:15019941-15021580:+|2.989072819725114|0.0529981962931253|5.82|149.0|23|1|sense L1ME1_dup30146|chr21:15019941-15021580:+|2.989072819725114|0.0529981962931253|5.82|149.0|23|1|sense L1ME1_dup30146|chr21:15019941-15021580:+|2.989072819725114|0.0529981962931253|5.82|149.0|23|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.7728271484375 2 569.273509 1136.53247 0.51773 0.00029473 -3.2268 -0.0018369 -2.709 -0.0015422 569.2713249437527 55.228 0.49911 58.538 58.294 58.793 3.3102 46 29 2 0 0 0 0.82752 1 12503 12503 2.3027 0.24298 1 63639 20199 12383 12494 12501 24054 24054 -0.030339032914525887 KYESGHFI 8 Unmodified _KYESGHFI_ 0 0 0 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 MSMS UPN48_class_I_Rep_2 6 490.7470703125 2 490.745442 979.476331 NaN NaN NaN NaN NaN NaN NaN 70.872 1 74.408 73.908 74.908 3.5359 0 0 0 0.40738 1 16506 16506 0.79363 0 1 + 20200 19815 12495 12502 24055 24055 -0.014227881366082329 KYEYKWSY 8 Unmodified _KYEYKWSY_ 0 0 0 REV__L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|15|2|sense REV__L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 583.78173828125 2 583.779482 1165.54441 NaN NaN NaN NaN NaN NaN NaN 46.017 1 49.261 48.761 49.761 3.2441 0 0 0 0.40404 1 9805 9805 5.2307 0.47466 1 + 20201 26713 12496 12503 24056 24056 -0.03173963276617542 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2 ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENST00000520294.5_1_8:109476316-109498824:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 541.323486328125 2 541.32386 1080.63317 0.37861 0.00020495 -1.0684 -0.00057833 -0.68975 -0.00037338 541.3236037725612 48.559 0.49394 52.082 51.834 52.328 3.5239 39 31 2 0 0 0 0.35081 2 9775 9714;9775 10.824 6.0679 1 103610 20202 1688 12497 12504 24057;24058 24058 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2 ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENST00000520294.5_1_8:109476316-109498824:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 541.3245239257812 2 541.32386 1080.63317 0.38379 0.00020775 -0.92782 -0.00050225 -0.54403 -0.00029449 541.8245527266446 48.265 0.48275 52.001 51.785 52.268 3.7361 49 34 2 0 0 0 0.33654 2 9614 9614;9659 11.64 7.3111 1 82977 20203 1688 12497 12504 24059;24060 24059 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2 ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENST00000520294.5_1_8:109476316-109498824:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 541.32373046875 2 541.32386 1080.63317 0.44621 0.00024154 -1.0236 -0.0005541 -0.57739 -0.00031255 541.3233445630094 48.357 0.27898 51.991 51.857 52.136 3.6339 29 20 2 0 0 0 0.28552 1 9597 9597 14.838 7.549 1 93218 20204 1688 12497 12504 24061 24061 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2 ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENST00000520294.5_1_8:109476316-109498824:+|nuORF MSMS UPN48_class_I_Rep_3 7 541.3238525390625 2 541.32386 1080.63317 NaN NaN NaN NaN NaN NaN NaN 48.529 1 52.163 51.663 52.663 3.6339 0 0 0 0.36505 1 9645 9645 7.2892 2.96 1 20205 1688 12497 12504 24062 24062 0.09607496753687883 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN47_class_I_Rep_1 2 647.2747802734375 2 647.274761 1292.53497 0.05495 3.5568E-05 0.1797 0.00011632 0.23465 0.00015188 647.2747569869895 39.673 1.6041 43.34 43.035 44.639 3.6668 343 127 4 0 0 0 0.0064536 14 7815 7699;7736;7776;7815;7860;7900;7946;7987;8027;8064;8101;8105;8142;8179 140.63 121.38 1 878170 20206 2438 12498 12505 24063;24064;24065;24066;24067;24068;24069;24070;24071;24072;24073;24074;24075;24076 24066 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN47_class_I_Rep_1 2 647.2749633789062 2 647.274761 1292.53497 0.070253 4.5473E-05 0.065417 4.2343E-05 0.13567 8.7816E-05 647.2747857931362 41.053 0.59636 44.725 44.555 45.152 3.6719 59 46 2 0 0 0 0.39745 3 8218 8218;8261;8304 8.1555 5.657 1 82903 20207 2438 12498 12505 24077;24078;24079 24077 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MSMS UPN47_class_I_Rep_1 2 647.2747802734375 2 647.274761 1292.53497 NaN NaN NaN NaN NaN NaN NaN 41.572 1 45.252 44.752 45.752 3.6792 0 0 0 0.3377 1 8362 8362 8.7454 6.2469 1 20208 2438 12498 12505 24080 24080 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MSMS UPN47_class_I_Rep_1 2 647.2738647460938 2 647.274761 1292.53497 NaN NaN NaN NaN NaN NaN NaN 41.74 1 45.42 44.92 45.92 3.6792 0 0 0 0.35904 1 8413 8413 7.609 4.8738 1 20209 2438 12498 12505 24081 24081 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MSMS UPN47_class_I_Rep_1 2 647.2753295898438 2 647.274761 1292.53497 NaN NaN NaN NaN NaN NaN NaN 41.913 1 45.593 45.093 46.093 3.6792 0 0 0 0.38073 1 8466 8466 5.2969 0.066215 1 20210 2438 12498 12505 24082 24082 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN47_class_I_Rep_2 3 647.2747802734375 2 647.274761 1292.53497 0.044835 2.9021E-05 0.1456 9.4246E-05 0.19044 0.00012327 647.2747311220469 40.142 1.9886 43.513 43.082 45.07 3.3712 303 154 3 0 0 0 0.0066947 15 7942 7844;7862;7905;7942;7983;8025;8066;8104;8148;8190;8225;8266;8304;8342;8394 125.53 106.27 1 427850 20211 2438 12498 12505 24083;24084;24085;24086;24087;24088;24089;24090;24091;24092;24093;24094;24095;24096;24097 24086 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MSMS UPN47_class_I_Rep_2 3 647.2742919921875 2 647.274761 1292.53497 NaN NaN NaN NaN NaN NaN NaN 41.853 1 45.218 44.718 45.718 3.3655 0 0 0 0.29913 1 8476 8476 10.8 5.5688 1 20212 2438 12498 12505 24098 24098 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN47_class_I_Rep_3 4 647.2748413085938 2 647.274761 1292.53497 -0.0064967 -4.2052E-06 0.11195 7.246E-05 0.10545 6.8255E-05 647.2747820163676 40.224 1.7702 43.462 43.101 44.871 3.2372 260 131 3 0 0 0 0.0064536 13 7995 7953;7957;7995;8048;8093;8134;8175;8215;8259;8271;8360;8398;8441 133.05 113.8 1 363300 20213 2438 12498 12505 24099;24100;24101;24102;24103;24104;24105;24106;24107;24108;24109;24110;24111 24101 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN48_class_I_Rep_1 5 647.274658203125 2 647.274761 1292.53497 0.46376 0.00030018 -0.06022 -3.8979E-05 0.40354 0.0002612 647.2746244857881 40.382 0.66545 43.887 43.565 44.231 3.5048 145 59 3 0 0 0 0.066364 2 7237 7195;7237 41.956 31.156 1 363760 20214 2438 12498 12505 24112;24113 24113 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN48_class_I_Rep_2 6 647.2748413085938 2 647.274761 1292.53497 0.44987 0.00029119 -0.023758 -1.5378E-05 0.42611 0.00027581 647.2746850392568 40.004 1.0553 43.745 43.403 44.458 3.7413 264 110 3 0 0 0 0.015012 5 7176 7091;7139;7176;7217;7271 103.42 88.171 1 407310 20215 2438 12498 12505 24114;24115;24116;24117;24118 24116 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS UPN48_class_I_Rep_3 7 647.2749633789062 2 647.274761 1292.53497 0.56348 0.00036473 -0.13677 -8.8525E-05 0.42672 0.0002762 647.2745735666335 40.152 0.89055 43.803 43.45 44.341 3.6509 179 82 3 0 0 0 0.0078401 1 7094 7094 96.367 67.872 1 300480 20216 2438 12498 12505 24119 24119 -0.09959776352798144 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MSMS UPN48_class_I_Rep_1 5 616.3207397460938 2 616.321514 1230.62847 NaN NaN NaN NaN NaN NaN NaN 48.273 1 51.797 51.297 52.297 3.5239 0 0 0 0.38073 1 9631 9631 5.2969 0.39987 1 20217 3485 12499 12506 24120 24120 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 616.3216552734375 2 616.321514 1230.62847 0.38975 0.00024021 0.3153 0.00019433 0.70505 0.00043454 616.321733865803 47.923 0.41813 51.659 51.41 51.828 3.7361 40 28 2 0 0 0 0.45441 1 9545 9545 4.897 0.70751 1 91805 20218 3485 12499 12506 24121 24121 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 616.3233032226562 2 616.321514 1230.62847 0.49245 0.00030351 0.021349 1.3158E-05 0.5138 0.00031667 616.3215349618864 48.083 0.33125 51.717 51.54 51.871 3.6339 22 19 2 0 0 0 0.45441 1 9518 9518 4.897 0.56777 1 78070 20219 3485 12499 12506 24122 24122 0.02238567820290882 KYFEVPSVL 9 Unmodified _KYFEVPSVL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS UPN48_class_I_Rep_2 6 541.2999877929688 2 541.30005 1080.58555 0.50272 0.00027212 0.052544 2.8442E-05 0.55527 0.00030057 541.2999880590164 66.124 0.82155 69.611 69.214 70.036 3.4866 118 58 3 0 0 0 0.13244 1 15098 15098 27.629 3.6082 1 554540 20220 2727 12500 12507 24123 24123 0.04847797762840855 KYFEVPSVL 9 Unmodified _KYFEVPSVL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS UPN48_class_I_Rep_3 7 541.300537109375 2 541.30005 1080.58555 0.5728 0.00031006 -0.009432 -5.1055E-06 0.56337 0.00030495 541.3000201518765 66.007 0.81534 69.515 69.122 69.937 3.5077 141 57 3 0 0 0 0.19147 1 14921 14921 21.537 3.3906 1 464440 20221 2727 12500 12507 24124 24124 0.04847797762840855 KYFGSMME 8 Unmodified _KYFGSMME_ 0 0 0 REV__L1MC5a_dup10071|chrX:119595991-119596664:+|1.005017449112951|0.0515942255659059|4.28|151.0|15|2|sense REV__L1MC5a_dup10071|chrX:119595991-119596664:+|1.005017449112951|0.0515942255659059|4.28|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 496.7132568359375 2 496.714439 991.414325 NaN NaN NaN NaN NaN NaN NaN 23.788 1 27.139 26.639 27.639 3.3509 0 0 0 0.40604 1 3085 3085 2.5775 0 1 + 20222 27102 12501 12508 24125 24125 -0.0817259887161299 KYFIEVNVYG 10 Unmodified _KYFIEVNVYG_ 0 0 0 BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|51|2|anti-sense BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|51|2|anti-sense BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.3209838867188 2 616.321514 1230.62847 0.38975 0.00024021 0.3153 0.00019433 0.70505 0.00043454 616.321733865803 47.923 0.41813 51.659 51.41 51.828 3.7361 40 28 2 0 0 0 0.56155 1 9499 9499 2.7352 0.43246 1 91805 20223 417 12502 12509 24126 24126 0.02238567820290882 KYFILLIIRE 10 Unmodified _KYFILLIIRE_ 0 0 0 L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|38|2|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|38|2|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.608154296875 3 436.607708 1306.80129 0.11015 4.8092E-05 -0.11491 -5.0172E-05 -0.0047636 -2.0798E-06 436.60796682939235 60.183 0.80877 63.657 63.25 64.059 3.4737 108 59 3 0 0 0 0.56444 1 13295 13295 0.69767 0.19171 1 257620 20224 12535 12503 12510 24127 24127 0.1601655894751275 KYFILLIIRE 10 Unmodified _KYFILLIIRE_ 0 0 0 L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|38|2|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|38|2|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.6080627441406 3 436.607708 1306.80129 0.18087 7.8969E-05 -0.358 -0.00015631 -0.17713 -7.7338E-05 436.6079107795981 60.162 0.46532 63.649 63.401 63.867 3.4868 70 39 3 0 0 0 0.56444 1 13254 13254 0.69767 0.07084 1 225910 20225 12535 12503 12510 24128 24128 0.1601655894751275 KYFKIYIFYY 10 Unmodified _KYFKIYIFYY_ 0 0 0 REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7955627441406 3 483.260197 1446.75876 0.26058 0.00012593 -2.2543 -0.0010894 -1.9937 -0.0009635 483.25927753452453 42.2 0.086365 42.2 42.168 42.255 0 9 7 2 0 0 0 0.84575 1 8343 8343 0.77653 0.27058 1 148530 + 20226 27790 12504 12511 24129 24129 0.053251638192705286 KYFKNRMK 8 Unmodified _KYFKNRMK_ 0 0 0 L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|5|1|sense L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|5|1|sense L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 557.873291015625 2 557.813136 1113.61172 NaN NaN NaN NaN NaN NaN NaN 111.97 1 115.6 115.1 116.1 3.6321 0 0 0 0.40746 1 27165 27165 0.69038 0 1 20227 12715 12505 12512 24130 24130 0.059457884533230754 KYFKPFSIP 9 Unmodified _KYFKPFSIP_ 0 0 0 REV__MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|201|3|anti-sense REV__MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|201|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 563.3184204101562 2 563.81841 1125.62227 0.51858 0.00029238 4.0197 0.0022664 4.5382 0.0025587 563.8205081863662 56.561 0.12197 59.862 59.8 59.922 3.3009 8 5 2 0 0 0 0.12383 1 12966 12966 3.2813 0.97858 1 58349 + 20228 31282 12506 12513 24131 24131 0.06448094379425129 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.3300170898438 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.139 1 64.611 64.111 65.111 3.4719 0 0 0 0.098956 1 13579 13579 24.882 15.905 1 20229 3658 12507 12514 24132 24132 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.3321533203125 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.202 1 64.669 64.169 65.169 3.4678 0 0 0 0.082627 1 13597 13597 28.234 16.739 1 20230 3658 12507 12514 24133 24133 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.330322265625 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.291 1 64.759 64.259 65.259 3.4678 0 0 0 0.19736 1 13624 13624 16.566 9.8427 1 20231 3658 12507 12514 24134 24134 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.330078125 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.416 1 64.884 64.384 65.384 3.4678 0 0 0 0.29913 1 13661 13661 10.8 6.8551 1 20232 3658 12507 12514 24135 24135 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.3318481445312 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.474 1 64.942 64.442 65.442 3.4678 0 0 0 0.10922 1 13679 13679 22.775 12.701 1 20233 3658 12507 12514 24136 24136 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.3301391601562 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.545 1 65.013 64.513 65.513 3.4678 0 0 0 0.064159 1 13702 13702 32.898 20.723 1 20234 3658 12507 12514 24137 24137 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_1 5 645.3327026367188 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.615 1 65.082 64.582 65.582 3.4678 0 0 0 0.059285 1 13723 13723 34.222 20.607 1 20235 3658 12507 12514 24138 24138 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_2 6 645.3311767578125 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.034 1 64.512 64.012 65.012 3.4785 0 0 0 0.16307 1 13525 13525 18.721 7.2265 1 20236 3658 12507 12514 24139 24139 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_2 6 645.3316040039062 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.198 1 64.677 64.177 65.177 3.4785 0 0 0 0.16307 1 13575 13575 18.721 9.9758 1 20237 3658 12507 12514 24140 24140 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_2 6 645.3309936523438 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.224 1 64.702 64.202 65.202 3.4785 0 0 0 0.27207 1 13583 13583 12.241 7.4846 1 20238 3658 12507 12514 24141 24141 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_2 6 645.3306274414062 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.394 1 64.868 64.368 65.368 3.4738 0 0 0 0.16307 1 13635 13635 18.721 8.6473 1 20239 3658 12507 12514 24142 24142 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_2 6 645.3318481445312 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.531 1 65.005 64.505 65.505 3.4738 0 0 0 0.3824 1 13676 13676 4.897 1.6157 1 20240 3658 12507 12514 24143 24143 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_2 6 645.3323364257812 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.678 1 65.152 64.652 65.652 3.4738 0 0 0 0.39036 1 13721 13721 2.9952 0 1 20241 3658 12507 12514 24144 24144 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MSMS UPN48_class_I_Rep_3 7 645.8334350585938 2 645.331882 1288.64921 0.64467 0.00041603 -1.1618 -0.00074973 -0.5171 -0.0003337 645.8328342743263 60.951 0.1601 64.463 64.327 64.487 3.5129 19 13 2 0 0 0 0.30497 2 13426 13419;13426 13.615 8.318 1 120800 20242 3658 12507 12514 24145;24146 24146 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MSMS UPN48_class_I_Rep_3 7 645.3304443359375 2 645.331882 1288.64921 0.64582 0.00041677 -1.4783 -0.00095401 -0.8325 -0.00053724 645.3300056186024 61.08 0.26837 64.593 64.475 64.743 3.5128 32 23 2 0 0 0 0.098221 3 13452 13452;13455;13484 34.222 21.349 1 137360 20243 3658 12507 12514 24147;24148;24149 24147 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_3 7 645.3306274414062 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.192 1 64.704 64.204 65.204 3.5128 0 0 0 0.17672 1 13503 13503 17.863 5.6225 1 20244 3658 12507 12514 24150 24150 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MSMS UPN48_class_I_Rep_3 7 645.3313598632812 2 645.331882 1288.64921 NaN NaN NaN NaN NaN NaN NaN 61.326 1 64.839 64.339 65.339 3.5129 0 0 0 0.11743 1 13544 13544 21.59 10.095 1 20245 3658 12507 12514 24151 24151 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MATCH UPN48_class_I_Rep_1 5 2 645.331882 1288.64921 0.60666 0.0003915 -1.1746 -0.00075799 -0.56792 -0.00036649 645.3311334049688 60.997 0.06514 64.47 64.444 64.509 3.4737 0.0034821 -1.3545E-05 NaN 13.615 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 39401 20246 3658 12507 12514 0.016431581999313494 KYFMWVLAR 9 Unmodified _KYFMWVLAR_ 0 0 0 REV__Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|35|2|anti-sense REV__Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|35|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 405.7978820800781 3 405.2232 1212.64777 -1.4365 -0.0005821 0.8118 0.00032896 -0.62469 -0.00025314 405.2234899286114 21.037 0.37653 24.386 24.311 24.687 3.3496 42 33 2 0 0 0 0.12509 1 2271 2271 1.1933 0 1 21357 + 20247 32586 12508 12515 24152 24152 0.04995245630198042 KYFQVFKV 8 Unmodified _KYFQVFKV_ 0 0 0 Cheshire_dup949|chr17:65022034-65023974:+|1.45913825802375|0.1651759572281774|3.14|151.0|6|1|sense Cheshire_dup949|chr17:65022034-65023974:+|1.45913825802375|0.1651759572281774|3.14|151.0|6|1|sense Cheshire_dup949|chr17:65022034-65023974:+|1.45913825802375|0.1651759572281774|3.14|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 529.6538696289062 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 72.6 1 72.6 72.1 73.1 0 0 0 0 0.40746 1 16787 16787 0.69038 0.088878 1 20248 565 12509 12516 24153 24153 0.06955825207955968 KYFTNSCYS 9 Unmodified _KYFTNSCYS_ 0 0 0 REV__MER11C_dup879|chr20:56520679-56521654:-|1.2559795278925467|0.2313669445267357|2.44|151.0|52|2|anti-sense REV__MER11C_dup879|chr20:56520679-56521654:-|1.2559795278925467|0.2313669445267357|2.44|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_2 3 556.736572265625 2 556.739499 1111.46445 NaN NaN NaN NaN NaN NaN NaN 40.514 1 43.885 43.385 44.385 3.3712 0 0 0 0.39036 1 8075 8075 2.9952 0.10602 1 + 20249 31112 12510 12517 24154 24154 -0.0868277294212021 KYFVLPPV 8 Unmodified _KYFVLPPV_ 0 0 0 REV__Arthur1_dup1465|chrX:72425963-72426743:+|1.7293562227778696|0.0229131278238272|6.24|150.0|19|3|sense REV__Arthur1_dup1465|chrX:72425963-72426743:+|1.7293562227778696|0.0229131278238272|6.24|150.0|19|3|sense MSMS UPN48_class_I_Rep_1 5 481.7870788574219 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 41.843 1 45.351 44.851 45.851 3.5079 0 0 0 0.40738 1 7672 7672 0.79363 0 1 + 20250 17247 12511 12518 24155 24155 0.08137037804942793 KYFVRYVF 8 Unmodified _KYFVRYVF_ 0 0 0 L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|81|3|anti-sense L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|81|3|anti-sense L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|81|3|anti-sense MSMS UPN48_class_I_Rep_2 6 561.3103637695312 2 561.310752 1120.60695 NaN NaN NaN NaN NaN NaN NaN 36.617 1 40.319 39.819 40.819 3.7021 0 0 0 0.40746 1 6172 6172 0.69038 0.088878 1 20251 11283 12512 12519 24156 24156 0.051472275822106894 KYGAGKSFI 9 Unmodified _KYGAGKSFI_ 0 0 0 REV__L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|15|2|sense REV__L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 485.7724304199219 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 22.431 1 25.781 25.281 26.281 3.3503 0 0 0 0.39428 1 2683 2683 2.0598 1.2661 1 + 20252 25653 12513 12520 24157 24157 0.04238375277122941 KYGALVNNF 9 Unmodified _KYGALVNNF_ 0 0 0 ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4 ENST00000495427.1_2_1:46810505-46812688:+|nuORF ENST00000495427.1_2_1:46810505-46812688:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 513.2735595703125 2 513.274367 1024.53418 0.23245 0.00011931 0.12517 6.4247E-05 0.35762 0.00018356 513.2744306523665 46.983 0.4909 50.503 50.354 50.845 3.5192 37 28 2 0 0 0 0.15122 1 9283 9283 25.399 7.2643 1 136980 20253 2220 12514 12521 24158 24158 0.02289473788800933 KYGALVNNF 9 Unmodified _KYGALVNNF_ 0 0 0 ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4 ENST00000495427.1_2_1:46810505-46812688:+|nuORF ENST00000495427.1_2_1:46810505-46812688:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 513.2738037109375 2 513.274367 1024.53418 0.23566 0.00012096 -0.14712 -7.5513E-05 0.088538 4.5444E-05 513.2743566895288 46.719 0.45169 50.468 50.279 50.73 3.7494 43 29 2 0 0 0 0.20276 3 9181 9143;9181;9233 20.454 4.777 1 124550 20254 2220 12514 12521 24159;24160;24161 24160 0.02289473788800933 KYGALVNNF 9 Unmodified _KYGALVNNF_ 0 0 0 ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4 ENST00000495427.1_2_1:46810505-46812688:+|nuORF ENST00000495427.1_2_1:46810505-46812688:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 513.274169921875 2 513.274367 1024.53418 0.23899 0.00012267 -0.15042 -7.7204E-05 0.088579 4.5465E-05 513.2744218034982 46.966 0.50068 50.602 50.366 50.866 3.6363 45 32 3 0 0 0 0.11683 2 9180 9128;9180 30.637 14.487 1 134180 20255 2220 12514 12521 24162;24163 24163 0.02289473788800933 KYGILPAFL 9 Unmodified _KYGILPAFL_ 0 0 0 L1PA15_dup3515|chr7:64673341-64675860:-|2.0736760511567587|0.0717007647700919|4.85|151.0|125|2|anti-sense L1PA15_dup3515|chr7:64673341-64675860:-|2.0736760511567587|0.0717007647700919|4.85|151.0|125|2|anti-sense L1PA15_dup3515|chr7:64673341-64675860:-|2.0736760511567587|0.0717007647700919|4.85|151.0|125|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.3080749511719 2 511.307678 1020.6008 0.14552 7.4407E-05 0.91225 0.00046644 1.0578 0.00054085 511.30815501913526 51.796 0.31422 55.389 55.162 55.477 3.5932 19 15 2 0 0 0 0.48414 1 11481 11481 2.3027 0 1 44309 20256 13931 12515 12522 24164 24164 0.09132709350694768 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 527.7732543945312 2 527.773145 1053.53174 0.45929 0.0002424 -0.18842 -9.9442E-05 0.27087 0.00014296 527.7730146413262 61.999 0.43722 65.467 65.208 65.645 3.4678 50 39 2 0 0 0 0.20276 1 13861 13861 20.454 6.5476 1 99062 20257 3184;8463 12516 12523 24165 24165 0.007113020594943009 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1 MSMS UPN48_class_I_Rep_2 6 527.7733154296875 2 527.773145 1053.53174 NaN NaN NaN NaN NaN NaN NaN 61.836 1 65.31 64.81 65.81 3.4738 0 0 0 0.089203 1 13769 13769 26.884 9.9414 1 20258 3184;8463 12516 12523 24166 24166 0.007113020594943009 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 527.773145 1053.53174 0.46101 0.00024331 -0.094436 -4.9841E-05 0.36658 0.00019347 527.7731276995416 61.909 0.1011 65.383 65.357 65.458 3.4738 0.015651 6.3212E-05 NaN 20.454 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 101540 20259 3184;8463 12516 12523 0.007113020594943009 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 527.773145 1053.53174 0.47187 0.00024904 -0.1309 -6.9085E-05 0.34097 0.00017995 527.7730705689784 61.742 0.46073 65.252 65.006 65.467 3.5104 -0.11525 2.4724E-05 NaN 20.454 47 40 2 NaN NaN NaN NaN 0 NaN NaN 0 98963 20260 3184;8463 12516 12523 0.007113020594943009 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS UPN48_class_I_Rep_1 5 548.8236694335938 2 548.823692 1095.63283 0.46462 0.00025499 -0.054421 -2.9868E-05 0.4102 0.00022512 548.823639771145 50.107 0.68008 53.631 53.324 54.004 3.5246 76 43 2 0 0 0 0.17979 3 10201 10162;10201;10241 22.658 13.913 1 161400 20261 2508 12517 12524 24167;24168;24169 24168 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS UPN48_class_I_Rep_2 6 548.8250122070312 2 548.823692 1095.63283 0.44513 0.0002443 -0.047972 -2.6328E-05 0.39716 0.00021797 548.8237809258856 49.89 0.67366 53.584 53.272 53.945 3.6946 71 42 2 0 0 0 0.19092 4 10149 10107;10149;10152;10198 21.59 9.3495 1 205930 20262 2508 12517 12524 24170;24171;24172;24173 24171 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS UPN48_class_I_Rep_3 7 548.8241577148438 2 548.823692 1095.63283 0.32995 0.00018108 0.032768 1.7984E-05 0.36271 0.00019907 548.823702229729 49.986 0.61029 53.607 53.31 53.92 3.621 54 37 2 0 0 0 0.24411 2 10082 10082;10134 17.443 7.2921 1 178310 20263 2508 12517 12524 24174;24175 24174 0.0888407703384928 KYGNFIDKL 9 Unmodified _KYGNFIDKL_ 0 0 0 ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10 ENST00000477972.1_1_7:89976055-89982324:+|nuORF ENST00000477972.1_1_7:89976055-89982324:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 549.2852783203125 2 549.303124 1096.5917 0.46095 0.0002532 -0.22373 -0.00012289 0.23722 0.00013031 549.3030216626005 47.062 0.51265 50.582 50.318 50.831 3.5192 46 31 2 0 0 0 0.35123 3 9293 9226;9282;9293 10.8 1.4562 1 138810 20264 1760 12518 12525 24176;24177;24178 24178 0.04726315994344077 KYGNFIDKL 9 Unmodified _KYGNFIDKL_ 0 0 0 ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10 ENST00000477972.1_1_7:89976055-89982324:+|nuORF ENST00000477972.1_1_7:89976055-89982324:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.3030395507812 2 549.303124 1096.5917 0.39486 0.0002169 -0.14646 -8.0452E-05 0.2484 0.00013645 549.3030419769186 46.778 0.58083 50.527 50.237 50.818 3.7494 62 38 2 0 0 0 0.39745 3 9163 9163;9192;9216 8.1555 1.4324 1 148500 20265 1760 12518 12525 24179;24180;24181 24179 0.04726315994344077 KYGNFIDKL 9 Unmodified _KYGNFIDKL_ 0 0 0 ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10 ENST00000477972.1_1_7:89976055-89982324:+|nuORF ENST00000477972.1_1_7:89976055-89982324:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 549.285400390625 2 549.303124 1096.5917 0.35069 0.00019263 -0.34347 -0.00018867 0.0072221 3.9671E-06 549.3028830879427 46.985 0.55045 50.621 50.293 50.844 3.6363 52 35 2 0 0 0 0.38714 4 9198 9111;9155;9198;9213 8.7454 2.5396 1 128230 20266 1760 12518 12525 24182;24183;24184;24185 24184 0.04726315994344077 KYGNYAFV 8 Unmodified _KYGNYAFV_ 0 0 0 nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2 nc|ENSG00000152208|O43424-2|GRID2 nc|ENSG00000152208|O43424-2|GRID2 MSMS UPN48_class_I_Rep_1 5 481.1952209472656 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 107.06 1 110.69 110.19 111.19 3.6299 0 0 0 0.40604 1 25792 25792 2.5775 0 1 20267 3614 12519 12526 24186 24186 -0.011298866482889025 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6 ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENST00000478050.1_1_2:24296944-24299099:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.7926025390625 2 487.792727 973.5709 0.20919 0.00010204 -0.092753 -4.5244E-05 0.11644 5.6797E-05 487.79253024161824 31.407 1.1969 34.941 34.563 35.76 3.5342 303 122 3 0 0 0 0.82752 7 4788 4574;4609;4642;4675;4709;4750;4788 26.884 9.9414 1 597650 20268 2110 12520 12527 24187;24188;24189;24190;24191;24192;24193 24193 0.08305770405377189 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6 ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENST00000478050.1_1_2:24296944-24299099:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 487.7926025390625 2 487.792727 973.5709 0.25997 0.00012681 -0.13922 -6.7909E-05 0.12075 5.89E-05 487.7924825037266 31.489 1.2946 35.13 34.54 35.835 3.641 311 135 3 0 0 0 0.82752 8 4626 4626;4659;4692;4728;4762;4798;4869;4931 28.487 9.2299 1 560200 20269 2110 12520 12527 24194;24195;24196;24197;24198;24199;24200;24201 24194 0.08305770405377189 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6 ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENST00000478050.1_1_2:24296944-24299099:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 487.7926940917969 2 487.792727 973.5709 0.13537 6.603E-05 -0.087855 -4.2855E-05 0.04751 2.3175E-05 487.7925454074464 31.193 1.2796 34.895 34.46 35.739 3.7015 324 146 3 0 0 0 0.82752 8 4508 4508;4542;4576;4609;4643;4678;4714;4748 48.346 19.859 1 588050 20270 2110 12520 12527 24202;24203;24204;24205;24206;24207;24208;24209 24202 0.08305770405377189 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS UPN48_class_I_Rep_1 5 472.7474060058594 2 472.747453 943.480354 0.2348 0.000111 0.023054 1.0899E-05 0.25785 0.0001219 472.747277383163 59.383 1.7954 62.864 62.409 64.205 3.4801 294 124 4 0 0 0 0.82752 3 13013 13013;13092;13133 108 15.175 1 2300700 20271 670 12521 12528 24210;24211;24212 24210 0.006353013570901567 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS UPN48_class_I_Rep_2 6 472.74737548828125 2 472.747453 943.480354 0.29515 0.00013953 -0.045052 -2.1298E-05 0.2501 0.00011824 472.7472540157907 59.374 1.5552 62.861 62.382 63.937 3.4868 298 117 4 0 0 0 4.8589E-10 4 13022 12944;12984;13022;13061 156.16 51.357 1 2529600 20272 670 12521 12528 24213;24214;24215;24216 24215 0.006353013570901567 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS UPN48_class_I_Rep_3 7 472.7474365234375 2 472.747453 943.480354 0.17298 8.1774E-05 0.11861 5.6072E-05 0.29158 0.00013785 472.7473076544597 59.205 1.5398 62.728 62.24 63.779 3.5231 285 116 4 0 0 0 0.82752 2 12909 12909;12946 112.59 7.794 1 2244100 20273 670 12521 12528 24217;24218 24217 0.006353013570901567 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MSMS UPN48_class_I_Rep_2 6 538.8261108398438 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 45.111 1 48.873 48.373 49.373 3.7617 0 0 0 0.35904 1 8673 8673 7.609 1.8771 1 20274 3471 12522 12529 24219 24219 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS UPN48_class_I_Rep_3 7 538.82666015625 2 538.826766 1075.63898 0.48532 0.00026151 -0.29924 -0.00016124 0.18608 0.00010027 538.8264979275149 45.572 0.87223 49.209 48.883 49.755 3.6369 107 64 2 0 0 0 0.26468 1 8681 8681 16.149 3.9084 1 233980 20275 3471 12522 12529 24220 24220 0.1041859526535518 KYGVTFYNF 9 Unmodified _KYGVTFYNF_ 0 0 0 ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 569.7827758789062 2 569.782025 1137.5495 0.55096 0.00031393 0.55432 0.00031584 1.1053 0.00062977 569.7823321390808 61.97 0.53921 65.438 65.397 65.937 3.4678 50 43 2 0 0 0 0.33908 1 13897 13897 11.495 4.393 1 98230 20276 7182 12523 12530 24221 24221 -0.013776594140153975 KYGVTFYNF 9 Unmodified _KYGVTFYNF_ 0 0 0 ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 569.7828979492188 2 569.782025 1137.5495 0.5393 0.00030728 0.31744 0.00018087 0.85674 0.00048815 569.7823103574456 61.99 0.55234 65.464 65.147 65.7 3.4738 68 46 2 0 0 0 0.2924 2 13787 13787;13818 14.405 8.6735 1 143190 20277 7182 12523 12530 24222;24223 24222 -0.013776594140153975 KYGVTFYNF 9 Unmodified _KYGVTFYNF_ 0 0 0 ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 569.7832641601562 2 569.782025 1137.5495 0.46553 0.00026525 0.82808 0.00047183 1.2936 0.00073708 569.7824139305083 61.735 0.41521 65.246 65.123 65.538 3.5104 63 37 2 0 0 0 0.35123 1 13712 13712 10.8 4.1691 1 132950 20278 7182 12523 12530 24224 24224 -0.013776594140153975 KYHGGGMR 8 Unmodified _KYHGGGMR_ 0 0 0 REV__MER21C_dup3462|chr11:4026486-4027182:-|1.3426813794708492|0.0226854307360505|5.89|151.0|3|1|sense REV__MER21C_dup3462|chr11:4026486-4027182:-|1.3426813794708492|0.0226854307360505|5.89|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 453.22576904296875 2 453.224154 904.433755 NaN NaN NaN NaN NaN NaN NaN 33.141 1 36.427 35.927 36.927 3.2867 0 0 0 0.40738 1 5871 5871 0.79363 0 1 + 20279 31234 12524 12531 24225 24225 -0.02228461745835375 KYHHRYTQ 8 Unmodified _KYHHRYTQ_ 0 0 0 MLT2B1_dup40|chr1:41175039-41175563:+|2.1082513503910603|0.032631840582441|6.01|150.0|39|3|anti-sense MLT2B1_dup40|chr1:41175039-41175563:+|2.1082513503910603|0.032631840582441|6.01|150.0|39|3|anti-sense MLT2B1_dup40|chr1:41175039-41175563:+|2.1082513503910603|0.032631840582441|6.01|150.0|39|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.784423828125 2 566.785964 1131.55738 NaN NaN NaN NaN NaN NaN NaN 17.082 1 20.44 19.94 20.94 3.3581 0 0 0 0.40625 1 1186 1186 2.3027 0 1 20280 16508 12525 12532 24226 24226 -0.0031408737386300345 KYHKLKMH 8 Unmodified _KYHKLKMH_ 0 0 0 MER47B_dup172|chr4:88030968-88031354:+|2.304936368091625|0.1063917941890691|4.44|151.0|23|2|anti-sense MER47B_dup172|chr4:88030968-88031354:+|2.304936368091625|0.1063917941890691|4.44|151.0|23|2|anti-sense MER47B_dup172|chr4:88030968-88031354:+|2.304936368091625|0.1063917941890691|4.44|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_1 2 543.2398681640625 2 542.807854 1083.60115 NaN NaN NaN NaN NaN NaN NaN 22.678 1 26.382 25.882 26.882 3.7042 0 0 0 0.40746 1 2676 2676 0.69038 0 1 20281 16007 12526 12533 24227 24227 0.06269805798910966 KYHRKRAKY 9 Unmodified _KYHRKRAKY_ 0 0 0 REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|6|1|sense REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|6|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 417.1086730957031 3 417.247396 1248.72036 -0.13302 -5.5503E-05 -1.0267 -0.00042837 -1.1597 -0.00048387 417.24694818677506 92.136 0.15952 95.762 95.669 95.828 3.626 27 21 2 0 0 0 0.12462 1 22133 22133 0.96228 0.33545 1 381920 + 20282 25836 12527 12534 24228 24228 0.10594715747993178 KYHRKRAKY 9 Unmodified _KYHRKRAKY_ 0 0 0 REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|6|1|sense REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|6|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 417.247396 1248.72036 0.085733 3.5772E-05 -0.94676 -0.00039503 -0.86102 -0.00035926 417.2470664342935 95.562 0.030121 95.562 95.548 95.578 0 -0.19779 1.111E-05 NaN 0.96228 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 227410 + 20283 25836 12527 12534 0.10594715747993178 KYHRKRAKY 9 Unmodified _KYHRKRAKY_ 0 0 0 REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|6|1|sense REV__L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 417.247396 1248.72036 0.10837 4.5217E-05 -0.93318 -0.00038937 -0.82481 -0.00034415 417.24696432370183 92.077 0.15353 95.955 95.921 96.075 3.8782 0.19536 2.8107E-05 NaN 0.96228 24 20 2 NaN NaN NaN NaN 0 NaN NaN 0 497560 + 20284 25836 12527 12534 0.10594715747993178 KYHRQRAK 8 Unmodified _KYHRQRAK_ 0 0 0 REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|48|2|sense REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|48|2|sense MSMS UPN48_class_I_Rep_1 5 543.8189086914062 2 543.817599 1085.62064 NaN NaN NaN NaN NaN NaN NaN 43.299 1 46.809 46.309 47.309 3.5103 0 0 0 0.39819 1 8111 8111 8.5933 0 1 + 20285 24294 12528 12535 24229 24229 0.08125898134017007 KYHRQRAK 8 Unmodified _KYHRQRAK_ 0 0 0 REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|48|2|sense REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|48|2|sense MSMS UPN48_class_I_Rep_1 5 543.8187255859375 2 543.817599 1085.62064 NaN NaN NaN NaN NaN NaN NaN 43.406 1 46.916 46.416 47.416 3.5103 0 0 0 0.40625 1 8144 8144 2.3027 0 1 + 20286 24294 12528 12535 24230 24230 0.08125898134017007 KYHSFLLYS 9 Unmodified _KYHSFLLYS_ 0 0 0 Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|13|1|sense Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|13|1|sense Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.8053588867188 2 579.303124 1156.5917 0.39291 0.00022762 0.22573 0.00013077 0.61865 0.00035838 579.3031681927782 48.957 0.802 52.586 52.153 52.955 3.6291 129 61 3 0 0 0 0.33654 3 9752 9752;9843;9851 11.64 0 1 299430 20287 32834 12529 12536 24231;24232;24233 24231 0.019663159944002473 KYHTPLDMVSV 11 Unmodified _KYHTPLDMVSV_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MSMS UPN48_class_I_Rep_1 5 645.3414916992188 2 645.331556 1288.64856 NaN NaN NaN NaN NaN NaN NaN 61.182 1 64.65 64.15 65.15 3.4678 0 0 0 0.38417 1 13591 13591 4.897 0.36815 1 20288 4982 12530 12537 24234 24234 0.015779954885829284 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS UPN48_class_I_Rep_1 5 577.3345336914062 2 577.334424 1152.6543 0.39383 0.00022737 0.019431 1.1218E-05 0.41326 0.00023859 577.3343363564167 48.498 0.85075 52.022 51.55 52.401 3.5239 144 56 3 0 0 0 0.0061843 5 9616 9616;9659;9701;9740;9799 103.82 46.102 1 798230 20289 1183 12531 12538 24235;24236;24237;24238;24239 24235 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS UPN48_class_I_Rep_2 6 577.3346557617188 2 577.334424 1152.6543 0.3792 0.00021893 0.0083259 4.8068E-06 0.38753 0.00022373 577.334340947991 48.073 0.92628 51.809 51.481 52.408 3.7361 161 66 3 0 0 0 0.0071659 3 9586 9541;9586;9625 114.19 56.464 1 700370 20290 1183 12531 12538 24240;24241;24242 24241 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS UPN48_class_I_Rep_3 7 577.3346557617188 2 577.334424 1152.6543 0.39463 0.00022784 0.033133 1.9129E-05 0.42777 0.00024697 577.3343227932096 48.264 0.84792 51.898 51.526 52.374 3.6339 149 59 3 0 0 0 0.0055879 4 9539 9539;9587;9626;9664 84.522 49.59 1 578920 20291 1183 12531 12538 24243;24244;24245;24246 24243 0.08407462062564264 KYIEKVSSR 9 Unmodified _KYIEKVSSR_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.3186645507812 2 555.319306 1108.62406 NaN NaN NaN NaN NaN NaN NaN 21.433 1 21.433 20.933 21.933 0 0 0 0 0.3967 1 2394 2394 1.4819 0.79152 1 20292 1110 12532 12539 24247 24247 0.07409103397367289 KYIKKNGK 8 Unmodified _KYIKKNGK_ 0 0 0 REV__L1MEc_dup18265|chr22:40074968-40076134:-|3.4911001896262945|0.0116015503262547|8.23|151.0|7|1|sense REV__L1MEc_dup18265|chr22:40074968-40076134:-|3.4911001896262945|0.0116015503262547|8.23|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 489.8063049316406 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 24.027 1 24.027 23.527 24.527 0 0 0 0 0.40746 1 3100 3100 0.69038 0 1 + 20293 28422 12533 12540 24248 24248 0.1125034343946254 KYIKQSPR 8 Unmodified _KYIKQSPR_ 0 0 0 REV__ENST00000422154.6_1_X:102931954-102933554:-|nuORF REV__ENST00000422154.6_1_X:102931954-102933554:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 510.3033447265625 2 510.303458 1018.59236 0.3562 0.00018177 -0.0071164 -3.6315E-06 0.34909 0.00017814 510.30333207312225 107.84 0.21249 111.51 111.43 111.64 3.6724 38 13 5 0 0 0 0.82752 1 26429 26429 7.2892 0 1 45384000 + 20294 22245 12534 12541 24249 24249 0.08381155434085485 KYILVHKLHKR 11 Unmodified _KYILVHKLHKR_ 0 0 0 Looper_dup161|chr5:32433172-32433800:-|1.3512574159111403|0.0214091273582342|5.98|151.0|46|3|anti-sense Looper_dup161|chr5:32433172-32433800:-|1.3512574159111403|0.0214091273582342|5.98|151.0|46|3|anti-sense Looper_dup161|chr5:32433172-32433800:-|1.3512574159111403|0.0214091273582342|5.98|151.0|46|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 478.79791259765625 3 478.973384 1433.89832 0.25825 0.00012369 2.6222 0.0012559 2.8804 0.0013796 479.30869335355015 62.456 0.10004 65.918 65.831 65.931 3.4625 6 5 2 0 0 0 22.551 1 13958 13958 0.45452 0.35968 1 45099 20295 15486 12535 12542 24250 24250 0.19872965947138255 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN48_class_I_Rep_1 5 550.2918701171875 2 550.292756 1098.57096 NaN NaN NaN NaN NaN NaN NaN 33.738 1 37.258 36.758 37.758 3.5201 0 0 0 0.35904 1 5304 5304 7.609 2.3121 1 20296 1544 12536 12543 24251 24251 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN48_class_I_Rep_1 5 550.2935791015625 2 550.292756 1098.57096 NaN NaN NaN NaN NaN NaN NaN 33.827 1 37.347 36.847 37.847 3.5201 0 0 0 0.10979 1 5330 5330 22.658 5.5452 1 20297 1544 12536 12543 24252 24252 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_2 6 550.29345703125 2 550.292756 1098.57096 0.47958 0.00026391 0.057902 3.1863E-05 0.53749 0.00029578 550.2927269840958 33.656 0.42682 37.317 37.173 37.599 3.6607 71 46 2 0 0 0 0.30497 2 5372 5338;5372 13.615 6.0059 1 95349 20298 1544 12536 12543 24253;24254 24254 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_3 7 550.2936401367188 2 550.292756 1098.57096 0.31803 0.00017501 0.33149 0.00018242 0.64952 0.00035743 550.2930319190907 33.614 0.56332 37.294 37.042 37.605 3.6797 96 58 2 0 0 0 0.17979 3 5271 5232;5271;5308 22.658 6.509 1 98688 20299 1544 12536 12543 24255;24256;24257 24256 0.02561725614691568 KYIPELAYY 9 Unmodified _KYIPELAYY_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MSMS UPN48_class_I_Rep_1 5 580.3055419921875 2 580.305332 1158.59611 NaN NaN NaN NaN NaN NaN NaN 58.604 1 62.091 61.591 62.591 3.487 0 0 0 0.32573 1 12802 12802 9.3831 2.66 1 20300 3591 12537 12544 24258 24258 0.02315780417256974 KYIPELAYY 9 Unmodified _KYIPELAYY_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MSMS UPN48_class_I_Rep_1 5 580.3070068359375 2 580.305332 1158.59611 NaN NaN NaN NaN NaN NaN NaN 58.665 1 62.152 61.652 62.652 3.487 0 0 0 0.27207 1 12821 12821 12.241 6.0349 1 20301 3591 12537 12544 24259 24259 0.02315780417256974 KYIPYKFMN 9 Unmodified _KYIPYKFMN_ 0 0 0 ENSG00000171451|ENST00000310045|DSEL ENSG00000171451|ENST00000310045|DSEL ENSG00000171451|ENST00000310045|DSEL MSMS UPN46_class_I_Rep_3 1 401.8780212402344 3 401.87921 1202.6158 NaN NaN NaN NaN NaN NaN NaN 21.28 1 21.28 20.78 21.78 0 0 0 0 0.39518 1 2354 2354 0.96228 0.26461 1 20302 4518 12538 12545 24260 24260 0.022598331564040564 KYIRLLYLR 9 Unmodified _KYIRLLYLR_ 0 0 0 REV__MLT1H-int_dup573|chr11:61453733-61454615:+|2.032777893888281|0.081818939199605|4.63|151.0|19|3|sense REV__MLT1H-int_dup573|chr11:61453733-61454615:+|2.032777893888281|0.081818939199605|4.63|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 619.3909301757812 2 619.392608 1236.77066 NaN NaN NaN NaN NaN NaN NaN 76.69 1 80.105 79.605 80.605 3.4149 0 0 0 0.4007 1 18989 18989 0.52476 0 1 + 20303 31754 12539 12546 24261 24261 0.16174825353095912 KYISVPLQK 9 Unmodified _KYISVPLQK_ 0 0 0 REV__L1MC4a_dup105|chr1:35976236-35977001:-|1.617078546910053|0.133683350791939|3.6|151.0|30|3|sense REV__L1MC4a_dup105|chr1:35976236-35977001:-|1.617078546910053|0.133683350791939|3.6|151.0|30|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 538.3273315429688 2 538.329142 1074.64373 0.58319 0.00031395 -1.2377 -0.00066627 -0.65448 -0.00035232 538.3312092553462 107.46 0.14151 110.99 110.89 111.03 3.5345 25 16 3 0 0 0 0.11705 1 25982 25982 6.7232 0 1 2979000 + 20304 26969 12540 12547 24262 24262 0.1093947940810267 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS UPN48_class_I_Rep_1 5 539.8289184570312 2 539.828975 1077.6434 0.3721 0.00020087 0.033623 1.8151E-05 0.40572 0.00021902 539.8287828423967 49.674 0.25491 53.198 53.011 53.266 3.5246 19 15 2 0 0 0 0.35123 1 10075 10075 10.8 4.0763 1 76072 20305 2340 12541 12548 24263 24263 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS UPN48_class_I_Rep_1 5 539.8287963867188 2 539.828975 1077.6434 NaN NaN NaN NaN NaN NaN NaN 49.875 1 53.4 52.9 53.9 3.5246 0 0 0 0.37891 1 10126 10126 5.7319 0.97584 1 20306 2340 12541 12548 24264 24264 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS UPN48_class_I_Rep_2 6 539.8295288085938 2 539.828975 1077.6434 0.41549 0.0002243 -0.084347 -4.5533E-05 0.33115 0.00017876 539.8288102649049 49.566 0.21484 53.261 53.11 53.325 3.6946 15 13 2 0 0 0 0.44742 1 10036 10036 5.2969 0.54088 1 102390 20307 2340 12541 12548 24265 24265 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS UPN48_class_I_Rep_2 6 539.828125 2 539.828975 1077.6434 NaN NaN NaN NaN NaN NaN NaN 49.749 1 53.444 52.944 53.944 3.6946 0 0 0 0.28608 1 10085 10085 11.495 5.2889 1 20308 2340 12541 12548 24266 24266 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS UPN48_class_I_Rep_3 7 539.8290405273438 2 539.828975 1077.6434 NaN NaN NaN NaN NaN NaN NaN 49.62 1 53.249 52.749 53.749 3.6291 0 0 0 0.36857 1 9980 9980 7.1017 1.8048 1 20309 2340 12541 12548 24267 24267 0.10768059688280118 KYIYSFSVPQ 10 Unmodified _KYIYSFSVPQ_ 0 0 0 ENSG00000225526|ENST00000564146|MKRN2OS ENSG00000225526|ENST00000564146|MKRN2OS ENSG00000225526|ENST00000564146|MKRN2OS MSMS UPN48_class_I_Rep_1 5 616.3213500976562 2 616.321514 1230.62847 NaN NaN NaN NaN NaN NaN NaN 48.126 1 51.647 51.147 52.147 3.5219 0 0 0 0.53105 1 9585 9585 2.4985 0.19575 1 20310 5658 12542 12549 24268 24268 0.02238567820290882 KYKGWETVF 9 Unmodified _KYKGWETVF_ 0 0 0 L1MB3_dup6624|chr7:45057461-45058324:-|3.7242522693894906|0.061415493339619|5.92|151.0|15|2|sense L1MB3_dup6624|chr7:45057461-45058324:-|3.7242522693894906|0.061415493339619|5.92|151.0|15|2|sense L1MB3_dup6624|chr7:45057461-45058324:-|3.7242522693894906|0.061415493339619|5.92|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.3035278320312 2 579.303124 1156.5917 0.39827 0.00023072 -0.23256 -0.00013473 0.16571 9.5996E-05 579.3030832260833 48.722 0.72895 52.439 52.156 52.885 3.7175 88 50 2 0 0 0 0.30034 1 9866 9866 13.906 2.2658 1 191960 20311 10443 12543 12550 24269 24269 0.0196631599437751 KYKKGLGG 8 Unmodified _KYKKGLGG_ 0 0 0 REV__L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|93|3|sense REV__L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|93|3|sense MSMS UPN48_class_I_Rep_2 6 425.7746276855469 2 425.760895 849.507237 NaN NaN NaN NaN NaN NaN NaN 60.455 1 63.934 63.434 64.434 3.4785 0 0 0 0.40738 1 13353 13353 0.79363 0 1 + 20312 27374 12544 12551 24270 24270 0.07646409968299395 KYKKWNYC 8 Unmodified _KYKKWNYC_ 0 0 0 L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|48|3|sense L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|48|3|sense L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|48|3|sense MSMS UPN48_class_I_Rep_1 5 566.7841186523438 2 566.784044 1131.55354 NaN NaN NaN NaN NaN NaN NaN 17.796 1 21.322 20.822 21.822 3.5261 0 0 0 0.40746 1 1092 1092 0.69038 0 1 20313 10145 12545 12552 24271 24271 -0.00697893191932053 KYKLGRAHH 9 Unmodified _KYKLGRAHH_ 0 0 0 L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|6|1|sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|6|1|sense L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 555.3196411132812 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 21.25 1 21.25 20.75 21.75 0 0 0 0 0.39518 1 2345 2345 1.8442 0 1 20314 14588 12546 12553 24272 24272 0.07542782276777871 KYKLSTLQL 9 Unmodified _KYKLSTLQL_ 0 0 0 REV__L1PBa1_dup136|chr5:66104401-66104862:+|1.3526517733473615|0.0586741748418213|4.53|151.0|2|1|sense REV__L1PBa1_dup136|chr5:66104401-66104862:+|1.3526517733473615|0.0586741748418213|4.53|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 547.3326416015625 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 76.198 1 76.198 75.698 76.698 0 0 0 0 0.39598 1 17760 17760 1.6526 0 1 + 20315 30501 12547 12554 24273 24273 0.11167462062576305 KYKNQHHF 8 Unmodified _KYKNQHHF_ 0 0 0 L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|36|2|sense L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|36|2|sense L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|36|2|sense MSMS UPN46_class_I_Rep_3 1 551.2830810546875 2 551.283057 1100.55156 NaN NaN NaN NaN NaN NaN NaN 93.809 1 93.809 93.309 94.309 0 0 0 0 0.40746 1 22744 22744 0.69038 0 1 20316 8705 12548 12555 24274 24274 0.005308141144723777 KYKQHNFNHS 10 Unmodified _KYKQHNFNHS_ 0 0 0 L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|15|2|sense L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|15|2|sense L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 434.8818664550781 3 434.882782 1301.62652 NaN NaN NaN NaN NaN NaN NaN 38.956 1 42.335 41.835 42.835 3.3785 0 0 0 0.53105 1 7599 7599 1.5923 0 1 20317 12067 12549 12556 24275 24275 -0.012230481449478248 KYKQNVPQL 9 Unmodified _KYKQNVPQL_ 0 0 0 REV__MER21B_dup2331|chr17:10185501-10185881:+|1.4740255920323289|0.0042544585257064|8.44|151.0|8|2|sense REV__MER21B_dup2331|chr17:10185501-10185881:+|1.4740255920323289|0.0042544585257064|8.44|151.0|8|2|sense MSMS UPN47_class_I_Rep_2 3 559.30322265625 2 559.321848 1116.62914 NaN NaN NaN NaN NaN NaN NaN 41.584 1 44.95 44.45 45.45 3.3655 0 0 0 0.39518 1 8393 8393 1.8442 0.36234 1 + 20318 31204 12550 12557 24276 24276 0.07549407259989493 KYKRIRNQRRQ 11 Unmodified _KYKRIRNQRRQ_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.31298828125 3 515.97808 1544.91241 0.34456 0.00017779 0.58755 0.00030316 0.93211 0.00048095 516.312999091063 102.7 0.21319 106.41 106.36 106.58 3.7108 52 31 2 0 0 0 0.68132 1 24343 24343 0.40827 0.31342 1 188090 + 20319 30337 12551 12558 24277 24277 0.1617501142814035 KYKWYYKLIPK 11 Unmodified _KYKWYYKLIPK_ 0 0 0 REV__L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense REV__L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.63446044921875 3 510.634146 1528.88061 0.28783 0.00014698 0.26843 0.00013707 0.55626 0.00028404 510.63407466059454 97.241 1.2279 101.15 100.39 101.61 3.9084 362 166 3 0 0 0 0.68478 1 22884 22884 0.094841 0.011491 1 543670 + 20320 27809 12552 12559 24278 24278 0.13732205901624184 KYLATLETL 9 Unmodified _KYLATLETL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS UPN48_class_I_Rep_2 6 526.3051147460938 2 526.305332 1050.59611 0.51643 0.0002718 -0.46806 -0.00024634 0.048371 2.5458E-05 526.3050667688558 56.19 0.51884 59.724 59.359 59.878 3.5333 58 39 2 0 0 0 0.022868 1 12037 12037 61.602 30.334 1 182320 20321 3932 12553 12560 24279 24279 0.07283780417287744 KYLATLETL 9 Unmodified _KYLATLETL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.305332 1050.59611 0.37675 0.00019828 -0.51592 -0.00027153 -0.13917 -7.3245E-05 526.3049485297325 56.285 0.5863 59.786 59.424 60.011 3.5014 0.031381 -2.9341E-05 NaN 61.602 71 46 2 NaN NaN NaN NaN 0 NaN NaN 0 210090 20322 3932 12553 12560 0.07283780417287744 KYLATTLVSF 10 Unmodified _KYLATTLVSF_ 0 0 0 REV__Tigger1_dup11495|chr20:3366959-3367980:-|2.104285978736108|0.1096186737413312|4.26|150.0|34|3|sense REV__Tigger1_dup11495|chr20:3366959-3367980:-|2.104285978736108|0.1096186737413312|4.26|150.0|34|3|sense MSMS UPN48_class_I_Rep_1 5 571.8268432617188 2 571.826432 1141.63831 NaN NaN NaN NaN NaN NaN NaN 49.421 1 52.945 52.445 53.445 3.5246 0 0 0 0.53105 1 9985 9985 5.7319 0.43497 1 + 20323 32359 12554 12561 24280 24280 0.07315755825652559 KYLCVIFI 8 Unmodified _KYLCVIFI_ 0 0 0 L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|6|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|6|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 499.7904968261719 2 499.790807 997.56706 NaN NaN NaN NaN NaN NaN NaN 24.034 1 27.499 26.999 27.999 3.4655 0 0 0 0.40604 1 3121 3121 2.5775 0 1 20324 11555 12555 12562 24281 24281 0.06817964587287406 KYLDKMEM 8 Unmodified _KYLDKMEM_ 0 0 0 REV__L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|23|2|sense REV__L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|23|2|sense MSMS UPN47_class_I_Rep_1 2 529.25732421875 2 529.256471 1056.49839 NaN NaN NaN NaN NaN NaN NaN 22.85 1 26.554 26.054 27.054 3.7042 0 0 0 0.40643 1 2727 2727 2.0598 0 1 + 20325 30299 12556 12563 24282 24282 -0.027600677747159352 KYLEETNSL 9 Unmodified _KYLEETNSL_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MULTI-MSMS UPN48_class_I_Rep_1 5 548.778564453125 2 548.779679 1095.5448 0.49424 0.00027123 -0.57592 -0.00031606 -0.081688 -4.4829E-05 548.7792630144805 38.594 0.41325 42.099 41.875 42.289 3.5048 44 35 2 0 0 0 0.31677 2 6717 6667;6717 12.873 5.2637 1 119720 20326 5492 12557 12564 24283;24284 24284 0.0008541165257156536 KYLEETNSL 9 Unmodified _KYLEETNSL_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MULTI-MSMS UPN48_class_I_Rep_2 6 548.7801513671875 2 548.779679 1095.5448 0.45008 0.00024699 -0.36826 -0.00020209 0.081818 4.49E-05 548.7794206665571 38.095 0.17206 41.811 41.68 41.852 3.7164 19 13 2 0 0 0 0.30497 1 6593 6593 13.615 6.0059 1 80567 20327 5492 12557 12564 24285 24285 0.0008541165257156536 KYLEETNSL 9 Unmodified _KYLEETNSL_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MSMS UPN48_class_I_Rep_2 6 548.7788696289062 2 548.779679 1095.5448 NaN NaN NaN NaN NaN NaN NaN 38.323 1 42.039 41.539 42.539 3.7164 0 0 0 0.31132 1 6664 6664 10.151 3.9448 1 20328 5492 12557 12564 24286 24286 0.0008541165257156536 KYLEETNSL 9 Unmodified _KYLEETNSL_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MULTI-MSMS UPN48_class_I_Rep_3 7 548.7784423828125 2 548.779679 1095.5448 0.34497 0.00018931 -0.43882 -0.00024081 -0.093849 -5.1503E-05 548.7793628404853 38.232 0.38636 41.892 41.692 42.078 3.6595 52 36 2 0 0 0 0.35123 1 6550 6550 10.8 3.1906 1 98974 20329 5492 12557 12564 24287 24287 0.0008541165257156536 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(50)IYSM(50) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS UPN48_class_I_Rep_1 5 605.27978515625 2 605.280143 1208.54573 0.42113 0.0002549 0.11701 7.0823E-05 0.53813 0.00032572 605.280260055188 45.068 0.55579 48.584 48.325 48.88 3.5162 65 40 2 0 0 0 0.048729 1 8640 8640 49.527 27.99 1 191630 20330 5557 12558 12565 24288 24288 165;166 -0.05019833294386444 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(44)IYSM(44) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS UPN48_class_I_Rep_2 6 605.28125 2 605.280143 1208.54573 0.40595 0.00024572 0.11916 7.2126E-05 0.52512 0.00031784 605.2802077167225 44.817 0.59885 48.579 48.237 48.836 3.7617 75 42 2 0 0 0 0.061655 1 8569 8569 43.982 16.353 1 275260 20331 5557 12558 12565 24289 24289 165;166 -0.05019833294386444 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(44)IYSM(44) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS UPN48_class_I_Rep_3 7 605.281494140625 2 605.280143 1208.54573 0.4679 0.00028321 0.34472 0.00020865 0.81262 0.00049186 605.2801465715256 45.066 0.58429 48.703 48.383 48.968 3.6372 70 39 2 0 0 0 0.061655 2 8538 8538;8568 43.982 20.776 1 200630 20332 5557 12558 12565 24290;24291 24290 165;166 -0.05019833294386444 KYLFQYQEI 9 Unmodified _KYLFQYQEI_ 0 0 0 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 REV__nc|ENSG00000106278|P23471-2|PTPRZ1 MULTI-MSMS UPN48_class_I_Rep_3 7 616.321044921875 2 616.321514 1230.62847 0.49245 0.00030351 0.021349 1.3158E-05 0.5138 0.00031667 616.3215349618864 48.083 0.33125 51.717 51.54 51.871 3.6339 22 19 2 0 0 0 0.47493 1 9467 9467 3.2813 0 1 78070 + 20333 18320 12559 12566 24292 24292 0.022385678202681447 KYLFVSILSVP 11 Unmodified _KYLFVSILSVP_ 0 0 0 REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense MSMS UPN47_class_I_Rep_1 2 633.3671264648438 2 633.378832 1264.74311 NaN NaN NaN NaN NaN NaN NaN 89.543 1 93.217 92.717 93.717 3.6738 0 0 0 0.38417 1 22388 22388 2.9952 0 1 + 20334 31448 12560 12567 24293 24293 0.12132877302224188 KYLFVSILSVP 11 Unmodified _KYLFVSILSVP_ 0 0 0 REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense MSMS UPN47_class_I_Rep_1 2 633.3692626953125 2 633.378832 1264.74311 NaN NaN NaN NaN NaN NaN NaN 89.578 1 93.252 92.752 93.752 3.6738 0 0 0 0.38417 1 22398 22398 2.9952 0 1 + 20335 31448 12560 12567 24294 24294 0.12132877302224188 KYLFVSILSVP 11 Unmodified _KYLFVSILSVP_ 0 0 0 REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense MSMS UPN47_class_I_Rep_3 4 633.3665771484375 2 633.378832 1264.74311 NaN NaN NaN NaN NaN NaN NaN 89.709 1 93.107 92.607 93.607 3.3976 0 0 0 0.38417 1 22491 22491 2.9952 0 1 + 20336 31448 12560 12567 24295 24295 0.12132877302224188 KYLFVSILSVP 11 Unmodified _KYLFVSILSVP_ 0 0 0 REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|163|3|anti-sense MSMS UPN47_class_I_Rep_3 4 633.3778686523438 2 633.378832 1264.74311 NaN NaN NaN NaN NaN NaN NaN 89.742 1 93.139 92.639 93.639 3.3976 0 0 0 0.38417 1 22501 22501 2.9952 0 1 + 20337 31448 12560 12567 24296 24296 0.12132877302224188 KYLGDRQRI 9 Unmodified _KYLGDRQRI_ 0 0 0 REV__ENSG00000111817|ENST00000644252|DSE REV__ENSG00000111817|ENST00000644252|DSE MULTI-MSMS UPN47_class_I_Rep_3 4 574.8296508789062 2 574.830372 1147.64619 0.46875 0.00026945 -1.3951 -0.00080194 -0.92634 -0.00053249 574.8295135989838 53.835 0.64088 57.025 56.871 57.511 3.1899 50 42 2 0 0 0 0.49026 1 12174 12174 1.6526 0 1 107170 + 20338 18467 12561 12568 24297 24297 0.07827327865788902 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS UPN48_class_I_Rep_1 5 567.8189697265625 2 567.818941 1133.62333 0.40519 0.00023008 0.012556 7.1295E-06 0.41775 0.0002372 567.8188674865809 47 0.85706 50.519 50.004 50.861 3.5192 100 54 2 0 0 0 0.056917 6 9231 9153;9160;9191;9231;9281;9300 46.021 22.873 1 237700 20339 1155 12562 12569 24298;24299;24300;24301;24302;24303 24301 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS UPN48_class_I_Rep_2 6 567.8193969726562 2 567.818941 1133.62333 0.3937 0.00022355 -0.17982 -0.0001021 0.21388 0.00012145 567.8186994741851 46.701 0.838 50.45 50.003 50.841 3.7494 105 54 3 0 0 0 0.041849 5 9128 9043;9084;9128;9170;9211 52.268 23.782 1 209950 20340 1155 12562 12569 24304;24305;24306;24307;24308 24306 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS UPN48_class_I_Rep_3 7 567.8193359375 2 567.818941 1133.62333 0.37323 0.00021193 -0.017159 -9.7435E-06 0.35607 0.00020219 567.8188477419089 46.909 0.69982 50.546 50.082 50.782 3.6363 69 42 2 0 0 0 0.0081951 3 9141 9084;9104;9141 71.134 29.039 1 207740 20341 1155 12562 12569 24309;24310;24311 24311 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MSMS UPN48_class_I_Rep_3 7 567.8192749023438 2 567.818941 1133.62333 NaN NaN NaN NaN NaN NaN NaN 47.052 1 50.688 50.188 51.188 3.6363 0 0 0 0.041661 1 9194 9194 39.957 10.876 1 20342 1155 12562 12569 24312 24312 0.06186308748306146 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS UPN48_class_I_Rep_1 5 553.825439453125 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 66.998 1 70.449 69.949 70.949 3.4516 0 0 0 0.21832 1 15363 15363 15.248 3.0078 1 20343 1428 12563 12570 24313 24313 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS UPN48_class_I_Rep_1 5 553.8269653320312 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 67.024 1 70.476 69.976 70.976 3.4516 0 0 0 0.056669 1 15371 15371 34.932 12.196 1 20344 1428 12563 12570 24314 24314 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS UPN48_class_I_Rep_1 5 553.8264770507812 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 67.18 1 70.632 70.132 71.132 3.4516 0 0 0 0.050874 1 15419 15419 36.506 13.77 1 20345 1428 12563 12570 24315 24315 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS UPN48_class_I_Rep_1 5 553.825927734375 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 67.321 1 70.773 70.273 71.273 3.4516 0 0 0 0.081356 1 15463 15463 28.495 6.9575 1 20346 1428 12563 12570 24316 24316 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS UPN48_class_I_Rep_1 5 553.8257446289062 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 67.455 1 70.907 70.407 71.407 3.4516 0 0 0 0.27207 1 15505 15505 12.241 6.0349 1 20347 1428 12563 12570 24317 24317 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN48_class_I_Rep_2 6 553.8265380859375 2 553.826432 1105.63831 0.5112 0.00028312 -0.16241 -8.9945E-05 0.34879 0.00019317 553.8262673765429 66.982 0.76226 70.478 70.15 70.913 3.4964 90 49 3 0 0 0 0.038999 4 15332 15293;15332;15373;15416 53.404 13.454 1 334860 20348 1428 12563 12570 24318;24319;24320;24321 24319 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS UPN48_class_I_Rep_2 6 553.826416015625 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 67.358 1 70.854 70.354 71.354 3.4964 0 0 0 0.37891 1 15461 15461 5.7319 2.1354 1 20349 1428 12563 12570 24322 24322 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN48_class_I_Rep_3 7 553.8267822265625 2 553.826432 1105.63831 0.43667 0.00024184 -0.081454 -4.5112E-05 0.35521 0.00019673 553.8263283548616 66.873 0.73435 70.381 70.044 70.778 3.5077 86 48 3 0 0 0 0.022868 5 15238 15144;15149;15189;15238;15280 61.602 19.762 1 287320 20350 1428 12563 12570 24323;24324;24325;24326;24327 24326 0.08971755825655237 KYLKLYLG 8 Unmodified _KYLKLYLG_ 0 0 0 REV__L1ME1_dup29438|chr20:1487815-1488361:+|1.4835224092403925|0.0226050642465849|6.04|150.0|17|3|sense REV__L1ME1_dup29438|chr20:1487815-1488361:+|1.4835224092403925|0.0226050642465849|6.04|150.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 499.73663330078125 2 499.307678 996.600803 NaN NaN NaN NaN NaN NaN NaN 49.513 1 53.172 52.672 53.672 3.6592 0 0 0 0.40604 1 10776 10776 2.5775 0 1 + 20351 27745 12564 12571 24328 24328 0.10236709350681394 KYLLGREV 8 Unmodified _KYLLGREV_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS UPN47_class_I_Rep_1 2 489.2928466796875 2 489.292559 976.570566 -0.29528 -0.00014448 0.19921 9.7472E-05 -0.096075 -4.7009E-05 489.2926057221428 31.569 0.72939 35.298 34.944 35.673 3.7293 93 53 2 0 0 0 0.82752 1 5403 5403 2.0598 0 1 116010 20352 2829 12565 12572 24329 24329 0.0813435068552053 KYLLHILIFFL 11 Unmodified _KYLLHILIFFL_ 0 0 0 L1M1_dup1798|chr3:142324923-142325419:-|1.7006959445560466|0.0314200483779822|5.76|151.0|34|3|anti-sense L1M1_dup1798|chr3:142324923-142325419:-|1.7006959445560466|0.0314200483779822|5.76|151.0|34|3|anti-sense L1M1_dup1798|chr3:142324923-142325419:-|1.7006959445560466|0.0314200483779822|5.76|151.0|34|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 473.63055419921875 3 473.963603 1418.86898 0.28013 0.00013277 3.4352 0.0016282 3.7153 0.0017609 473.9650977759411 61.024 0.065353 64.503 64.485 64.551 3.4785 6 4 2 0 0 0 22.551 1 13534 13534 1.2148 0.70888 1 106300 20353 8499 12566 12573 24330 24330 0.17630008878313674 KYLLHILIFFL 11 Unmodified _KYLLHILIFFL_ 0 0 0 L1M1_dup1798|chr3:142324923-142325419:-|1.7006959445560466|0.0314200483779822|5.76|151.0|34|3|anti-sense L1M1_dup1798|chr3:142324923-142325419:-|1.7006959445560466|0.0314200483779822|5.76|151.0|34|3|anti-sense L1M1_dup1798|chr3:142324923-142325419:-|1.7006959445560466|0.0314200483779822|5.76|151.0|34|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 473.963603 1418.86898 0.26431 0.00012527 1.6031 0.00075981 1.8674 0.00088508 473.9641251831251 60.721 0.029343 64.195 64.177 64.206 3.4737 -0.15405 -0.0024533 NaN 1.2148 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 60577 20354 8499 12566 12573 0.17630008878313674 KYLLMRRV 8 Unmodified _KYLLMRRV_ 0 0 0 HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|10|1|sense HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|10|1|sense HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 539.8302612304688 2 539.831329 1077.6481 NaN NaN NaN NaN NaN NaN NaN 49.952 1 53.477 52.977 53.977 3.5246 0 0 0 0.4044 1 10150 10150 4.756 0.81161 1 20355 8437 12567 12574 24331 24331 0.11238665350060728 KYLLPQKIN 9 Unmodified _KYLLPQKIN_ 0 0 0 L1MEc_dup6671|chr6:1692409-1693665:-|1.2951465935582318|0.0487694839959859|4.73|150.0|32|3|sense L1MEc_dup6671|chr6:1692409-1693665:-|1.2951465935582318|0.0487694839959859|4.73|150.0|32|3|sense L1MEc_dup6671|chr6:1692409-1693665:-|1.2951465935582318|0.0487694839959859|4.73|150.0|32|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 558.8425903320312 2 558.842416 1115.67028 0.33423 0.00018678 -0.13362 -7.4675E-05 0.20061 0.00011211 558.8423521965886 46.432 0.67647 50.068 49.719 50.395 3.6363 60 40 2 0 0 0 0.36392 1 9015 9015 10.074 3.3508 1 203840 20356 13124 12568 12575 24332 24332 0.1170716829947196 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS UPN48_class_I_Rep_3 7 548.289306640625 2 548.289682 1094.56481 0.45822 0.00025124 -0.14321 -7.8519E-05 0.31502 0.00017272 548.2895549485677 63.025 0.55332 66.534 66.343 66.896 3.5091 67 43 2 0 0 0 0.13244 1 14082 14082 27.629 9.4825 1 127770 20357 4860 12569 12576 24333 24333 0.021312073831722955 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MATCH UPN48_class_I_Rep_1 5 2 548.289682 1094.56481 0.59017 0.00032358 -0.17121 -9.3871E-05 0.41896 0.00022971 548.2895303705486 63.292 0.54045 66.753 66.519 67.059 3.4615 0.12049 2.4085E-05 NaN 27.629 76 42 3 NaN NaN NaN NaN 0 NaN NaN 0 135960 20358 4860 12569 12576 0.021312073831722955 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MATCH UPN48_class_I_Rep_2 6 2 548.289682 1094.56481 0.53257 0.000292 -0.25946 -0.00014226 0.27311 0.00014974 548.2894435083534 63.136 0.60051 66.61 66.45 67.051 3.4738 -0.02243 -7.2696E-05 NaN 27.629 77 51 2 NaN NaN NaN NaN 0 NaN NaN 0 125190 20359 4860 12569 12576 0.021312073831722955 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000457179.5_1_22:22317029-22324763:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 544.29736328125 2 543.795132 1085.57571 0.43941 0.00023895 -0.092754 -5.0439E-05 0.34665 0.00018851 543.7950713536302 53.391 0.70757 56.911 56.571 57.279 3.5192 84 50 2 0 0 0 0.13455 3 11214 11165;11214;11263 27.223 8.5413 1 318870 20360 1467 12570 12577 24334;24335;24336 24335 0.036346097574551095 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000457179.5_1_22:22317029-22324763:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 544.2967529296875 2 543.795132 1085.57571 0.54772 0.00029785 -0.14645 -7.9641E-05 0.40127 0.00021821 543.7950518838217 53.255 0.69977 56.864 56.525 57.225 3.6098 79 44 2 0 0 0 0.10956 2 11134 11134;11221 32.037 11.584 1 341760 20361 1467 12570 12577 24337;24338 24337 0.036346097574551095 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000457179.5_1_22:22317029-22324763:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 543.7951049804688 2 543.795132 1085.57571 0.35696 0.00019412 -0.0080447 -4.3747E-06 0.34892 0.00018974 543.7952330456313 53.351 0.6382 56.935 56.56 57.198 3.5836 82 44 2 0 0 0 0.10225 3 11079 11079;11122;11174 33.445 12.991 1 229600 20362 1467 12570 12577 24339;24340;24341 24339 0.036346097574551095 KYLRLPHSHL 10 Unmodified _KYLRLPHSHL_ 0 0 0 REV__L1PB4_dup1281|chr3:142327683-142328207:-|1.1572891123823967|0.0192972232136627|5.91|151.0|21|3|sense REV__L1PB4_dup1281|chr3:142327683-142328207:-|1.1572891123823967|0.0192972232136627|5.91|151.0|21|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 421.9153747558594 3 421.915535 1262.72478 -0.085647 -3.6136E-05 -0.58981 -0.00024885 -0.67546 -0.00028499 421.91546986976607 38.731 1.0222 42.236 41.693 42.715 3.5048 161 86 2 0 0 0 0.56034 1 6747 6747 3.5871 3.5871 1 365970 + 20363 30573 12571 12578 24342 24342 0.10392180170879328 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 ENST00000471737.1_1_6:36936681-36938521:-|nuORF ENST00000471737.1_1_6:36936681-36938521:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 591.82958984375 2 591.829506 1181.64446 0.54771 0.00032415 -0.13801 -8.1679E-05 0.4097 0.00024247 591.8293310581346 58.951 0.79227 62.438 62.164 62.956 3.487 128 49 3 0 0 0 0.1562 1 12918 12918 84.522 42.567 1 801890 20364 3021 12572 12579 24343 24343 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 ENST00000471737.1_1_6:36936681-36938521:-|nuORF ENST00000471737.1_1_6:36936681-36938521:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 591.8297119140625 2 591.829506 1181.64446 0.56907 0.00033679 -0.069699 -4.125E-05 0.49937 0.00029554 591.8293694171613 58.917 0.75656 62.416 62.13 62.886 3.4987 128 47 3 0 0 0 0.21193 1 12846 12846 47.732 24.996 1 937170 20365 3021 12572 12579 24344 24344 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 ENST00000471737.1_1_6:36936681-36938521:-|nuORF ENST00000471737.1_1_6:36936681-36938521:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 591.8294067382812 2 591.829506 1181.64446 0.47157 0.00027909 -0.083132 -4.92E-05 0.38843 0.00022989 591.829408290918 58.749 0.81568 62.272 62.01 62.825 3.5231 144 52 3 0 0 0 0.22807 2 12831 12764;12831 40.725 22.352 1 914310 20366 3021 12572 12579 24345;24346 24346 0.06090274057191891 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS UPN48_class_I_Rep_1 5 606.3372802734375 2 606.337164 1210.65977 0.46278 0.0002806 0.15554 9.4307E-05 0.61832 0.00037491 606.3373286572131 71.149 0.21249 74.615 74.581 74.793 3.466 25 19 2 0 0 0 0.52389 1 16619 16619 8.9762 4.7867 1 78033 20367 1231 12573 12580 24347 24347 0.06287140854374229 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MSMS UPN48_class_I_Rep_1 5 606.3372802734375 2 606.337164 1210.65977 NaN NaN NaN NaN NaN NaN NaN 71.393 1 74.859 74.359 75.359 3.466 0 0 0 0.53105 1 16687 16687 13.615 6.0059 1 20368 1231 12573 12580 24348 24348 0.06287140854374229 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS UPN48_class_I_Rep_2 6 606.3370361328125 2 606.337164 1210.65977 0.47976 0.0002909 0.0015932 9.6599E-07 0.48135 0.00029186 606.3368666562145 71.142 0.29787 74.692 74.471 74.769 3.5505 48 33 2 0 0 0 0.48801 1 16583 16583 12.873 5.7709 1 116530 20369 1231 12573 12580 24349 24349 0.06287140854374229 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS UPN48_class_I_Rep_3 7 606.3363647460938 2 606.337164 1210.65977 0.6075 0.00036835 -0.063364 -3.842E-05 0.54414 0.00032993 606.3370446233835 71.179 0.28895 74.697 74.526 74.815 3.5185 46 27 2 0 0 0 0.44952 1 16532 16532 15.739 8.1297 1 117500 20370 1231 12573 12580 24350 24350 0.06287140854374229 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 571.826416015625 2 571.826432 1141.63831 0.41705 0.00023848 -0.19815 -0.00011331 0.2189 0.00012517 571.8261630475765 49.135 0.4659 52.853 52.76 53.225 3.7175 44 32 2 0 0 0 0.43178 1 9919 9919 6.1918 2.9105 1 113620 20371 7210 12574 12581 24351 24351 0.07315755825652559 KYLYRPFR 8 Unmodified _KYLYRPFR_ 0 0 0 REV__ENSG00000188032|ENST00000548523|C19orf67 REV__ENSG00000188032|ENST00000548523|C19orf67 MSMS UPN48_class_I_Rep_1 5 571.825927734375 2 571.827101 1141.63965 NaN NaN NaN NaN NaN NaN NaN 49.552 1 53.077 52.577 53.577 3.5246 0 0 0 0.40625 1 10026 10026 2.3027 0.4585 1 + 20372 20951 12575 12582 24352 24352 0.0744943470506314 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN48_class_I_Rep_1 5 595.3161010742188 2 595.316232 1188.61791 0.42945 0.00025566 -0.16549 -9.8516E-05 0.26396 0.00015714 595.3160401120086 42.138 0.43008 45.646 45.384 45.814 3.5079 58 42 2 0 0 0 0.45441 2 7776 7776;7786 4.897 1.6157 1 109530 20373 1497 12576 12583 24353;24354 24353 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MATCH UPN48_class_I_Rep_3 7 2 595.316232 1188.61791 0.43899 0.00026134 -0.16679 -9.9294E-05 0.2722 0.00016204 595.3162252843599 41.92 0.44208 45.566 45.366 45.808 3.6458 -0.040323 -8.1779E-07 NaN 4.897 61 45 2 NaN NaN NaN NaN 0 NaN NaN 0 112120 20374 1497 12576 12583 0.031145851658493484 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(74)DINFDF 0 0 1 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN48_class_I_Rep_1 5 604.7684936523438 2 604.768257 1207.52196 0.57493 0.0003477 -0.010724 -6.4858E-06 0.56421 0.00034121 604.7682138509967 61.69 1.4197 65.158 64.692 66.111 3.4678 367 121 4 0 0 0 0.0065234 7 13833 13678;13720;13756;13796;13833;13872;13912 139.78 39.691 1 3561100 20375 2964 12577 12584 24355;24356;24357;24358;24359;24360;24361 24359 95 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(91)DINFDF 0 0 1 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN48_class_I_Rep_2 6 604.7684936523438 2 604.768257 1207.52196 0.54443 0.00032925 0.032031 1.9371E-05 0.57646 0.00034862 604.768240736368 61.653 1.3742 65.127 64.584 65.958 3.4738 334 110 4 0 0 0 0.0057368 7 13632 13594;13632;13670;13709;13749;13786;13826 139.78 39.691 1 3598000 20376 2964 12577 12584 24362;24363;24364;24365;24366;24367;24368 24363 95 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(130)DINFDF 0 0 1 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN48_class_I_Rep_3 7 604.7684326171875 2 604.768257 1207.52196 0.55073 0.00033306 0.022527 1.3624E-05 0.57326 0.00034669 604.7682373516371 61.491 1.3442 65.004 64.475 65.819 3.5128 345 115 4 0 0 0 0.0058768 7 13554 13479;13517;13554;13593;13631;13669;13708 139.78 39.691 1 3789300 20377 2964 12577 12584 24369;24370;24371;24372;24373;24374;24375 24371 95 -0.07349930736563692 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN48_class_I_Rep_1 5 597.2725830078125 2 596.7708 1191.52705 0.45808 0.00027337 0.20066 0.00011975 0.65874 0.00039312 596.7709792759805 71.132 0.34021 74.598 74.423 74.763 3.466 54 35 2 0 0 0 0.20144 1 16634 16634 20.581 6.1756 1 162420 20378 2964 12577 12585 24376 24376 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-SECPEP UPN48_class_I_Rep_1 5 597.3226928710938 2 596.7708 1191.52705 0.45753 0.00027304 1.2827 0.00076546 1.7402 0.0010385 596.7707784158144 71.381 0.05526 74.847 74.811 74.866 3.466 8 5 2 0 0 0 0.11585 1 16683 16683 13.615 0 1 66853 20379 2964 12577 12585 24377 24377 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS UPN48_class_I_Rep_2 6 596.7714233398438 2 596.7708 1191.52705 NaN NaN NaN NaN NaN NaN NaN 70.959 1 74.494 73.994 74.994 3.5359 0 0 0 0.076899 1 16529 16529 29.437 6.7791 1 20380 2964 12577 12585 24378 24378 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-SECPEP UPN48_class_I_Rep_3 7 597.27294921875 2 596.7708 1191.52705 0.58476 0.00034897 -0.086535 -5.1642E-05 0.49823 0.00029733 596.7707680855001 70.908 0.21201 74.427 74.272 74.484 3.5185 30 22 2 0 0 0 0.11892 1 16422 16422 10.151 2.8613 1 100400 20381 2964 12577 12585 24379 24379 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000176658|ENST00000318217|MYO1D nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MATCH UPN48_class_I_Rep_3 7 2 596.7708 1191.52705 0.58439 0.00034875 -0.17036 -0.00010167 0.41403 0.00024708 596.7704504558328 71.006 0.067383 74.525 74.484 74.552 3.5185 -0.16112 -0.00033308 NaN 13.615 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 68144 20382 2964 12577 12585 -0.06105626873932124 KYMIIILMV 9 Unmodified _KYMIIILMV_ 0 0 0 L1MB3_dup7205|chr8:652737-653238:+|2.341023957190236|0.2817828115683954|3.05|151.0|31|2|anti-sense L1MB3_dup7205|chr8:652737-653238:+|2.341023957190236|0.2817828115683954|3.05|151.0|31|2|anti-sense L1MB3_dup7205|chr8:652737-653238:+|2.341023957190236|0.2817828115683954|3.05|151.0|31|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3346557617188 2 562.334524 1122.6545 0.040764 2.2923E-05 0.19113 0.00010748 0.23189 0.0001304 562.334633188229 23.543 0.041691 23.543 23.517 23.558 0 4 2 2 0 0 0 0.50582 1 2974 2974 0 0 1 66312 20383 10453 12578 12586 24380 24380 0.09807422466587923 KYMTAVVKL 9 Oxidation (M) _KYM(Oxidation (M))TAVVKL_ KYM(1)TAVVKL KYM(65)TAVVKL 0 0 1 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 534.8095703125 2 534.809728 1067.6049 0.38793 0.00020747 -0.32045 -0.00017138 0.067477 3.6087E-05 534.8094578283295 35.144 1.2797 38.659 38.215 39.494 3.5144 262 132 3 0 0 0 0.016816 1 5693 5693 65.474 21.615 1 858820 20384 921 12579 12587 24381 24381 19 0.07380430782109215 KYMTAVVKL 9 Oxidation (M) _KYM(Oxidation (M))TAVVKL_ 0 0 1 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 534.809728 1067.6049 0.42654 0.00022812 -0.40039 -0.00021413 0.026154 1.3988E-05 534.8094386458573 34.885 1.2506 38.559 38.15 39.4 3.6735 -0.037769 6.3807E-06 NaN 65.474 314 123 3 NaN NaN NaN NaN 0 NaN NaN 0 848280 20385 921 12579 12587 19 0.07380430782109215 KYMTAVVKL 9 Oxidation (M) _KYM(Oxidation (M))TAVVKL_ 0 0 1 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 534.809728 1067.6049 0.44593 0.00023849 -0.46634 -0.0002494 -0.020405 -1.0913E-05 534.8094314430697 34.9 1.4611 38.572 38.123 39.584 3.6721 -0.024519 -6.4163E-05 NaN 65.474 355 159 3 NaN NaN NaN NaN 0 NaN NaN 0 968020 20386 921 12579 12587 19 0.07380430782109215 KYMTAVVKL 9 Unmodified _KYMTAVVKL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 526.8121948242188 2 526.81227 1051.60999 0.31238 0.00016456 -0.17695 -9.322E-05 0.13542 7.1343E-05 526.8120716584024 43.342 1.0843 46.853 46.528 47.612 3.5103 198 90 3 0 0 0 0.0070648 3 8125 8086;8125;8167 87.258 41.559 1 641910 20387 921 12579 12588 24382;24383;24384 24383 0.08624734644718046 KYMTAVVKL 9 Unmodified _KYMTAVVKL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 526.8123168945312 2 526.81227 1051.60999 0.3316 0.00017469 -0.15315 -8.0681E-05 0.17845 9.4012E-05 526.8120796638576 43.077 1.1161 46.838 46.433 47.549 3.7617 209 90 3 0 0 0 0.065535 1 8053 8053 42.312 16.044 1 523850 20388 921 12579 12588 24385 24385 0.08624734644718046 KYMTAVVKL 9 Unmodified _KYMTAVVKL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 526.812255859375 2 526.81227 1051.60999 0.37459 0.00019734 -0.17853 -9.4052E-05 0.19606 0.00010328 526.8120593396634 43.289 0.96258 46.928 46.478 47.441 3.6385 172 76 3 0 0 0 0.0073203 3 8050 7968;8006;8050 71.708 35.202 1 508960 20389 921 12579 12588 24386;24387;24388 24388 0.08624734644718046 KYNANFVTF 9 Unmodified _KYNANFVTF_ 0 0 0 ENST00000527157.1_1_11:66888787-66947744:+|nuORF;ENSG00000173120.15,KDM2A,chr11,+,I15.1,67231961,67240046|36|10.73|1|intron;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A ENST00000527157.1_1_11:66888787-66947744:+|nuORF ENST00000527157.1_1_11:66888787-66947744:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 552.2799682617188 2 552.279649 1102.54475 0.53195 0.00029379 -0.56562 -0.00031238 -0.033667 -1.8594E-05 552.7806750074598 54.03 1.0544 57.544 57.094 58.148 3.5143 225 75 4 0 0 0 0.0064763 5 11422 11359;11382;11422;11464;11504 103.35 51.085 1 903860 20390 4611 12580 12589 24389;24390;24391;24392;24393 24391 -0.0024254355678294814 KYNANFVTF 9 Unmodified _KYNANFVTF_ 0 0 0 ENST00000527157.1_1_11:66888787-66947744:+|nuORF;ENSG00000173120.15,KDM2A,chr11,+,I15.1,67231961,67240046|36|10.73|1|intron;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A ENST00000527157.1_1_11:66888787-66947744:+|nuORF ENST00000527157.1_1_11:66888787-66947744:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 552.2799682617188 2 552.279649 1102.54475 0.23922 0.00013211 -0.26577 -0.00014678 -0.026549 -1.4662E-05 552.7808209738582 53.978 1.0399 57.562 57.121 58.161 3.5836 217 74 4 0 0 0 0.0060693 7 11344 11215;11261;11265;11302;11344;11383;11428 89.401 53.274 1 984130 20391 4611 12580 12589 24394;24395;24396;24397;24398;24399;24400 24398 -0.0024254355678294814 KYNDFGNSF 9 Unmodified _KYNDFGNSF_ 0 0 0 ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF ENSG00000166526|ENST00000299667|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 MSMS UPN48_class_I_Rep_3 7 546.2435913085938 2 546.243264 1090.47197 NaN NaN NaN NaN NaN NaN NaN 42.76 1 46.402 45.902 46.902 3.6415 0 0 0 0.35904 1 7874 7874 7.609 1.8771 1 20392 4247 12581 12590 24401 24401 -0.06964297350191373 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS UPN48_class_I_Rep_1 5 559.2693481445312 2 559.269281 1116.52401 0.58916 0.0003295 -0.25299 -0.00014149 0.33617 0.00018801 559.2690343177755 63.508 0.92588 66.966 66.544 67.47 3.4578 202 72 3 0 0 0 0.0050147 6 14277 14194;14236;14277;14315;14351;14391 96.367 67.88 1 1203400 20393 784 12582 12591 24402;24403;24404;24405;24406;24407 24404 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS UPN48_class_I_Rep_2 6 559.2696533203125 2 559.269281 1116.52401 0.53901 0.00030145 -0.1916 -0.00010716 0.34741 0.00019429 559.269096855793 63.365 0.92188 66.838 66.428 67.349 3.4738 239 76 4 0 0 0 0.0050147 6 14208 14134;14171;14208;14240;14279;14318 93.166 93.166 1 1542100 20394 784 12582 12591 24408;24409;24410;24411;24412;24413 24410 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS UPN48_class_I_Rep_3 7 559.2694702148438 2 559.269281 1116.52401 0.43283 0.00024207 -0.095322 -5.3311E-05 0.3375 0.00018876 559.2691585062098 63.235 0.93264 66.744 66.33 67.262 3.5091 231 75 4 0 0 0 0.006303 6 14067 14028;14067;14104;14144;14188;14254 103.42 99.755 1 2183000 20395 784 12582 12591 24414;24415;24416;24417;24418;24419 24415 -0.029591339364287705 KYNELLSFT 9 Unmodified _KYNELLSFT_ 0 0 0 REV__ERV3-16A3_I-int_dup4269|chr10:87460284-87460944:+|1.78782379286429|0.0860471311755448|4.38|151.0|4|1|sense REV__ERV3-16A3_I-int_dup4269|chr10:87460284-87460944:+|1.78782379286429|0.0860471311755448|4.38|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.792236328125 2 557.792589 1113.57063 0.43476 0.00024251 -0.10812 -6.0311E-05 0.32664 0.00018219 557.7924579452356 66.044 1.1464 69.23 68.801 69.948 3.1853 169 78 3 0 0 0 0.46869 1 16044 16044 3.9444 0 1 558000 + 20396 23248 12583 12592 24420 24420 0.01838305894852965 KYNLPRLNQK 10 Unmodified _KYNLPRLNQK_ 0 0 0 L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|2|1|sense L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|2|1|sense L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 637.3720703125 2 637.372404 1272.73025 NaN NaN NaN NaN NaN NaN NaN 103.04 1 106.82 106.32 107.32 3.7788 0 0 0 0.53105 1 25350 25350 1.4819 0 1 20397 10131 12584 12593 24421 24421 0.10479858962662547 KYNTIYNET 9 Unmodified _KYNTIYNET_ 0 0 0 L1MDa_dup1082|chr2:238088626-238089357:+|1.6967066313471164|0.2150359920911259|2.98|151.0|14|2|sense L1MDa_dup1082|chr2:238088626-238089357:+|1.6967066313471164|0.2150359920911259|2.98|151.0|14|2|sense L1MDa_dup1082|chr2:238088626-238089357:+|1.6967066313471164|0.2150359920911259|2.98|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 573.2771606445312 2 573.277303 1144.54005 0.047911 2.7466E-05 -0.040929 -2.3464E-05 0.0069815 4.0024E-06 573.277247905494 17.941 0.76921 21.328 21.015 21.785 3.387 128 86 2 0 0 0 0.49187 1 1392 1392 1.4819 0 1 47231 20398 12086 12585 12594 24422 24422 -0.026434724901946538 KYPALLRN 8 Unmodified _KYPALLRN_ 0 0 0 nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;nc|ENSG00000118322|O94823-3|ATP10B nc|ENSG00000118322|O94823-2|ATP10B nc|ENSG00000118322|O94823-2|ATP10B MULTI-MSMS UPN48_class_I_Rep_2 6 487.79241943359375 2 487.792727 973.5709 0.25997 0.00012681 -0.13922 -6.7909E-05 0.12075 5.89E-05 487.7924825037266 31.489 1.2946 35.13 34.54 35.835 3.641 311 135 3 0 0 0 0.82752 1 4832 4832 12.532 0 1 560200 20399 7229 12586 12595 24423 24423 0.08305770405377189 KYPASSSVF 9 Unmodified _KYPASSSVF_ 0 0 0 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MULTI-MSMS UPN48_class_I_Rep_2 6 493.25396728515625 2 493.2531 984.491647 0.23218 0.00011452 -0.36023 -0.00017768 -0.12805 -6.3162E-05 493.2528385865709 38.207 0.50473 41.923 41.567 42.072 3.7164 69 45 2 0 0 0 0.23293 1 6626 6626 18.146 1.2041 1 97191 20400 5777 12587 12596 24424 24424 -0.0012192133942789951 KYPDIISRI 9 Unmodified _KYPDIISRI_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS UPN48_class_I_Rep_1 5 552.8229370117188 2 552.824224 1103.63389 0.50188 0.00027745 -0.8768 -0.00048472 -0.37492 -0.00020726 552.8236248118986 50.101 1.0584 53.626 52.995 54.054 3.5246 116 67 2 0 0 0 0.16787 4 10196 10153;10196;10199;10299 23.801 8.9628 1 335310 20401 1740 12588 12597 24425;24426;24427;24428 24426 0.08622291402753035 KYPDIISRI 9 Unmodified _KYPDIISRI_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS UPN48_class_I_Rep_2 6 552.8236083984375 2 552.824224 1103.63389 0.4476 0.00024745 -0.85373 -0.00047196 -0.40612 -0.00022452 552.823636763339 49.749 1.008 53.444 53.038 54.046 3.6946 115 64 2 0 0 0 0.20144 2 10116 10071;10116 20.581 8.0595 1 342040 20402 1740 12588 12597 24429;24430 24430 0.08622291402753035 KYPDIISRI 9 Unmodified _KYPDIISRI_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS UPN48_class_I_Rep_3 7 552.8234252929688 2 552.824224 1103.63389 0.28022 0.00015491 -0.53917 -0.00029807 -0.25895 -0.00014315 552.8238400919066 49.965 1.0797 53.586 53.037 54.117 3.621 131 67 3 0 0 0 0.20144 3 10112 10015;10069;10112 20.581 8.9406 1 300600 20403 1740 12588 12597 24431;24432;24433 24433 0.08622291402753035 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000170296|ENST00000302386|GABARAP ENSG00000170296|ENST00000302386|GABARAP MULTI-MSMS UPN48_class_I_Rep_1 5 543.8189697265625 2 543.818941 1085.62333 0.42711 0.00023227 -0.15416 -8.3837E-05 0.27295 0.00014844 543.8187533169912 42.783 0.95736 46.291 45.825 46.783 3.5079 184 75 3 0 0 0 0.061655 5 7934 7934;7979;8017;8058;8075 43.982 19.961 1 521280 20404 846 12589 12598 24434;24435;24436;24437;24438 24434 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000170296|ENST00000302386|GABARAP ENSG00000170296|ENST00000302386|GABARAP MULTI-MSMS UPN48_class_I_Rep_2 6 543.81884765625 2 543.818941 1085.62333 0.41704 0.00022679 -0.25726 -0.00013991 0.15978 8.6889E-05 543.8187334984032 42.45 1.1596 46.207 45.633 46.792 3.7579 270 107 3 0 0 0 0.019142 6 7883 7847;7883;7922;7958;7972;8003 63.961 33.324 1 546260 20405 846 12589 12598 24439;24440;24441;24442;24443;24444 24440 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000170296|ENST00000302386|GABARAP ENSG00000170296|ENST00000302386|GABARAP MULTI-MSMS UPN48_class_I_Rep_3 7 543.8190307617188 2 543.818941 1085.62333 0.41475 0.00022555 -0.23161 -0.00012595 0.18314 9.9594E-05 543.8187046831422 42.533 1.0794 46.175 45.768 46.848 3.6415 214 89 3 0 0 0 0.061655 5 7818 7818;7856;7897;7944;7962 43.982 20.982 1 551940 20406 846 12589 12598 24445;24446;24447;24448;24449 24445 0.08394308748324875 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_1 5 585.8139038085938 2 585.813325 1169.6121 0.4436 0.00025987 0.24723 0.00014483 0.69083 0.0004047 585.8136823711875 75.39 0.28445 78.889 78.798 79.082 3.4996 104 26 4 0 0 0 0.0058741 3 17911 17840;17875;17911 125.53 62.956 1 13451000 20407 5597;4579 12590 12599 24450;24451;24452 24452 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_1 5 585.8134765625 2 585.813325 1169.6121 0.44296 0.00025949 0.098412 5.7651E-05 0.54137 0.00031714 585.8134333780762 75.636 0.76791 79.136 79.082 79.85 3.4996 167 82 4 0 0 0 0.0070571 6 18022 17949;17988;18022;18055;18091;18125 103.42 49.587 1 7624400 20408 5597;4579 12590 12599 24453;24454;24455;24456;24457;24458 24455 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_1 5 585.8140869140625 2 585.813325 1169.6121 0.44103 0.00025836 -0.59622 -0.00034927 -0.15519 -9.0914E-05 585.8131711212001 76.585 0.15034 80.096 79.992 80.142 3.5102 31 17 2 0 0 0 0.33908 1 18191 18191 11.495 2.1116 1 114770 20409 5597;4579 12590 12599 24459 24459 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MSMS UPN48_class_I_Rep_1 5 585.8123168945312 2 585.813325 1169.6121 NaN NaN NaN NaN NaN NaN NaN 76.709 1 80.219 79.719 80.719 3.5102 0 0 0 0.28608 1 18223 18223 11.495 1.4208 1 20410 5597;4579 12590 12599 24460 24460 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_2 6 585.8138427734375 2 585.813325 1169.6121 0.47511 0.00027832 0.29389 0.00017216 0.76899 0.00045049 585.8135722960211 75.166 0.29927 78.756 78.528 78.828 3.59 103 32 5 0 0 0 0.0071648 1 17700 17700 114.2 42.279 1 10171000 20411 5597;4579 12590 12599 24461 24461 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_2 6 585.813720703125 2 585.813325 1169.6121 0.47517 0.00027836 0.16996 9.9566E-05 0.64513 0.00037793 585.8135407325555 75.325 0.16058 78.915 78.813 78.973 3.59 67 16 5 0 0 0 0.0071648 2 17766 17733;17766 114.2 60.369 1 9513000 20412 5597;4579 12590 12599 24462;24463 24463 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_2 6 585.8136596679688 2 585.813325 1169.6121 0.47526 0.00027841 0.19107 0.00011193 0.66633 0.00039034 585.8133894197706 75.47 0.14056 79.071 78.955 79.096 3.6011 62 16 5 0 0 0 0.0070571 1 17800 17800 86.332 32.499 1 4027600 20413 5597;4579 12590 12599 24464 24464 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_2 6 585.8135375976562 2 585.813325 1169.6121 0.47531 0.00027844 0.10843 6.3517E-05 0.58374 0.00034196 585.8133274835252 75.539 0.28545 79.14 79.103 79.388 3.6011 111 33 4 0 0 0 0.013215 2 17830 17830;17864 67.838 14.005 1 1443700 20414 5597;4579 12590 12599 24465;24466 24465 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_2 6 585.8134155273438 2 585.813325 1169.6121 0.47562 0.00027863 -0.2303 -0.00013491 0.24532 0.00014371 585.8131368887132 76.417 1.0217 80.018 79.402 80.424 3.6012 323 120 4 0 0 0 0.026395 7 18017 17895;17961;17990;18017;18048;18082;18118 59.368 13.669 1 1098400 20415 5597;4579 12590 12599 24467;24468;24469;24470;24471;24472;24473 24470 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_3 7 585.8138427734375 2 585.813325 1169.6121 0.54903 0.00032163 0.70856 0.00041508 1.2576 0.00073672 585.8138372797844 75.083 0.53013 78.649 78.182 78.712 3.5659 204 56 5 0 0 0 0.0071648 3 17604 17534;17571;17604 114.2 51.629 1 14822000 20416 5597;4579 12590 12599 24474;24475;24476 24476 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_3 7 585.8136596679688 2 585.813325 1169.6121 0.54801 0.00032103 0.063093 3.6961E-05 0.6111 0.00035799 585.8136141396144 75.469 1.2491 79.035 78.704 79.953 3.5659 507 137 5 0 0 0 0.0070571 11 17829 17640;17681;17715;17753;17790;17829;17862;17888;17894;17932;17964 114.2 60.369 1 20298000 20417 5597;4579 12590 12599 24477;24478;24479;24480;24481;24482;24483;24484;24485;24486;24487 24482 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_3 7 585.8125 2 585.813325 1169.6121 0.54563 0.00031964 -0.75226 -0.00044068 -0.20663 -0.00012105 585.8128971048503 76.507 0.22344 80.09 79.962 80.186 3.5831 61 25 3 0 0 0 0.11355 3 18005 18000;18005;18038 31.268 8.5321 1 244330 20418 5597;4579 12590 12599 24488;24489;24490 24489 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_3 7 585.8134155273438 2 585.813325 1169.6121 0.54505 0.0003193 -0.34649 -0.00020298 0.19856 0.00011632 585.8130511317312 76.69 0.17836 80.273 80.156 80.335 3.5831 43 19 3 0 0 0 0.11355 1 18074 18074 31.268 8.5321 1 263410 20419 5597;4579 12590 12599 24491 24491 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN48_class_I_Rep_3 7 585.8136596679688 2 585.813325 1169.6121 0.54481 0.00031916 -0.37665 -0.00022065 0.16816 9.8508E-05 585.8132282334441 76.825 0.17182 80.418 80.32 80.492 3.5936 38 18 3 0 0 0 0.33908 1 18111 18111 11.495 2.1116 1 208530 20420 5597;4579 12590 12599 24492 24492 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 585.813325 1169.6121 0.47495 0.00027823 1.4261 0.00083542 1.901 0.0011137 585.8141425448389 74.926 0.38779 78.516 78.15 78.538 3.59 -0.11663 0.00061597 NaN 114.2 149 46 4 NaN NaN NaN NaN 0 NaN NaN 0 4799000 20421 5597;4579 12590 12599 0.03407486654191416 KYPGPKGNLL 10 Unmodified _KYPGPKGNLL_ 0 0 0 L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|77|3|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|77|3|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|77|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 543.8190307617188 2 543.818941 1085.62333 0.41475 0.00022555 -0.23161 -0.00012595 0.18314 9.9594E-05 543.8187046831422 42.533 1.0794 46.175 45.768 46.848 3.6415 214 89 3 0 0 0 0.52083 1 7986 7986 9.3831 2.0939 1 551940 20422 8536 12591 12600 24493 24493 0.08394308748324875 KYPHLVAGA 9 Unmodified _KYPHLVAGA_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS UPN48_class_I_Rep_1 5 478.2712707519531 2 478.271627 954.528701 0.12312 5.8884E-05 -0.15707 -7.5124E-05 -0.033956 -1.624E-05 478.27144502455565 42.792 0.86517 46.3 45.825 46.691 3.5079 109 70 2 0 0 0 0.30667 1 7957 7957 13.508 0 1 147830 20423 4775 12592 12601 24494 24494 0.04961794996984281 KYPHLVAGA 9 Unmodified _KYPHLVAGA_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 478.271627 954.528701 0.12312 5.8884E-05 -0.15707 -7.5124E-05 -0.033956 -1.624E-05 478.27144502455565 42.792 0.86517 46.3 45.825 46.691 3.5079 0.016187 -5.3485E-05 NaN 13.508 109 70 2 NaN NaN NaN NaN 0 NaN NaN 0 147830 20424 4775 12592 12601 0.04961794996984281 KYPHLVAGA 9 Unmodified _KYPHLVAGA_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 478.271627 954.528701 0.13418 6.4172E-05 -0.10085 -4.8233E-05 0.033326 1.5939E-05 478.27154773751914 42.718 0.62384 46.359 45.977 46.601 3.6415 0.076022 2.9756E-07 NaN 13.508 67 47 2 NaN NaN NaN NaN 0 NaN NaN 0 115250 20425 4775 12592 12601 0.04961794996984281 KYPHYFPLL 9 Unmodified _KYPHYFPLL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MSMS UPN48_class_I_Rep_1 5 589.3231201171875 2 589.32386 1176.63317 NaN NaN NaN NaN NaN NaN NaN 61.87 1 65.337 64.837 65.837 3.4678 0 0 0 0.19137 1 13801 13801 16.942 5.302 1 20426 4555 12593 12602 24495 24495 0.05191496753695901 KYPINIQLK 9 Unmodified _KYPINIQLK_ 0 0 0 REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 558.8422241210938 2 558.842416 1115.67028 0.45943 0.00025675 -0.2953 -0.00016503 0.16413 9.1721E-05 558.8422049697416 46.505 0.95382 50.025 49.623 50.577 3.5192 106 62 2 0 0 0 0.35081 1 9183 9183 10.824 0 1 246440 + 20427 26248 12594 12603 24496 24496 0.11707168299449222 KYPINIQLK 9 Unmodified _KYPINIQLK_ 0 0 0 REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 558.8411865234375 2 558.842416 1115.67028 0.405 0.00022633 -0.31544 -0.00017628 0.089561 5.005E-05 558.8421386461831 46.236 0.93043 49.985 49.541 50.471 3.7494 105 60 2 0 0 0 0.41259 3 8962 8962;9063;9108 7.2892 0 1 291960 + 20428 26248 12594 12603 24497;24498;24499 24497 0.11707168299449222 KYPINIQLK 9 Unmodified _KYPINIQLK_ 0 0 0 REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 558.8418579101562 2 558.842416 1115.67028 0.33423 0.00018678 -0.13362 -7.4675E-05 0.20061 0.00011211 558.8423521965886 46.432 0.67647 50.068 49.719 50.395 3.6363 60 40 2 0 0 0 0.42249 1 9057 9057 6.7232 0 1 203840 + 20429 26248 12594 12603 24500 24500 0.11707168299449222 KYPINIQLK 9 Unmodified _KYPINIQLK_ 0 0 0 REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|43|3|sense MSMS UPN48_class_I_Rep_3 7 558.8419189453125 2 558.842416 1115.67028 NaN NaN NaN NaN NaN NaN NaN 46.144 1 49.781 49.281 50.281 3.6369 0 0 0 0.38639 1 8915 8915 3.9444 0 1 + 20430 26248 12594 12603 24501 24501 0.11707168299449222 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS UPN48_class_I_Rep_1 5 551.85302734375 2 551.852784 1101.69102 0.52124 0.00028765 0.01681 9.2767E-06 0.53805 0.00029692 551.8526897498841 53.368 1.1735 56.887 56.43 57.603 3.5192 181 82 3 0 0 0 0.19092 4 11241 11163;11203;11241;11282 21.59 3.5815 1 512780 20431 2190 12595 12604 24502;24503;24504;24505 24504 0.14423758679117782 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS UPN48_class_I_Rep_2 6 551.8530883789062 2 551.852784 1101.69102 0.55883 0.00030839 -0.03403 -1.8779E-05 0.5248 0.00028961 551.8526618260264 53.217 1.0671 56.827 56.498 57.565 3.6098 121 73 3 0 0 0 0.19092 4 11128 11128;11169;11207;11246 21.59 6.3417 1 452950 20432 2190 12595 12604 24506;24507;24508;24509 24506 0.14423758679117782 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS UPN48_class_I_Rep_3 7 551.8528442382812 2 551.852784 1101.69102 0.2492 0.00013752 0.31722 0.00017506 0.56642 0.00031258 551.8528166987036 53.446 1.0639 57.03 56.482 57.546 3.5836 163 77 3 0 0 0 0.16799 4 11065 11065;11107;11146;11186 23.79 6.3417 1 309990 20433 2190 12595 12604 24510;24511;24512;24513 24510 0.14423758679117782 KYPLLLQSI 9 Unmodified _KYPLLLQSI_ 0 0 0 ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 ENST00000595897.5_1_19:42402462-42407822:+|nuORF ENST00000595897.5_1_19:42402462-42407822:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 537.8316650390625 2 537.831517 1073.64848 0.43655 0.00023479 -0.085875 -4.6186E-05 0.35067 0.0001886 537.8313719760553 66.648 0.42545 70.1 69.724 70.149 3.4516 75 28 3 0 0 0 0.013952 1 15252 15252 100.09 32.253 1 875780 20434 1163 12596 12605 24514 24514 0.11460363550895636 KYPLLLQSI 9 Unmodified _KYPLLLQSI_ 0 0 0 ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 ENST00000595897.5_1_19:42402462-42407822:+|nuORF ENST00000595897.5_1_19:42402462-42407822:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 537.8314819335938 2 537.831517 1073.64848 0.48283 0.00025968 -0.10628 -5.716E-05 0.37655 0.00020252 537.8313697145785 66.504 1.1753 69.991 69.433 70.608 3.4866 153 79 3 0 0 0 0.0058741 2 15162 15162;15192 76.825 21.322 1 512470 20435 1163 12596 12605 24515;24516 24515 0.11460363550895636 KYPLLLQSI 9 Unmodified _KYPLLLQSI_ 0 0 0 ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1 ENST00000595897.5_1_19:42402462-42407822:+|nuORF ENST00000595897.5_1_19:42402462-42407822:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 537.831517 1073.64848 0.61773 0.00033223 -0.15773 -8.4831E-05 0.46 0.0002474 537.831335573083 66.402 1.1989 69.909 69.42 70.619 3.5077 -0.090777 -3.2046E-05 NaN 76.825 199 83 3 NaN NaN NaN NaN 0 NaN NaN 0 666720 20436 1163 12596 12605 0.11460363550895636 KYPLNLYLL 9 Unmodified _KYPLNLYLL_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS UPN48_class_I_Rep_2 6 568.8392333984375 2 568.839342 1135.66413 0.4796 0.00027282 0.25764 0.00014656 0.73724 0.00041937 568.839566204351 74.301 0.17465 77.879 77.78 77.954 3.5779 26 18 2 0 0 0 0.46869 1 17478 17478 3.9444 0 1 97717 20437 3717 12597 12606 24517 24517 0.10172650067920586 KYPLNLYLL 9 Unmodified _KYPLNLYLL_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MSMS UPN48_class_I_Rep_2 6 568.8404541015625 2 568.839342 1135.66413 NaN NaN NaN NaN NaN NaN NaN 74.431 1 78.021 77.521 78.521 3.59 0 0 0 0.13551 1 17515 17515 20.454 6.5476 1 20438 3717 12597 12606 24518 24518 0.10172650067920586 KYPLNLYLL 9 Unmodified _KYPLNLYLL_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MSMS UPN48_class_I_Rep_2 6 568.8419799804688 2 568.839342 1135.66413 NaN NaN NaN NaN NaN NaN NaN 74.461 1 78.051 77.551 78.551 3.59 0 0 0 0.029163 1 17524 17524 46.021 11.919 1 20439 3717 12597 12606 24519 24519 0.10172650067920586 KYPLNLYLL 9 Unmodified _KYPLNLYLL_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MSMS UPN48_class_I_Rep_3 7 568.8402099609375 2 568.839342 1135.66413 NaN NaN NaN NaN NaN NaN NaN 74.867 1 78.433 77.933 78.933 3.5659 0 0 0 0.38639 1 17557 17557 3.9444 0 1 20440 3717 12597 12606 24520 24520 0.10172650067920586 KYPNLLNQL 9 Unmodified _KYPNLLNQL_ 0 0 0 ENST00000528400.1_1_8:42939784-42940422:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 551.8158569335938 2 551.816399 1101.61824 0.63685 0.00035143 -0.22755 -0.00012556 0.40931 0.00022586 551.8161761957814 59.222 1.0206 62.702 62.368 63.388 3.4801 134 69 3 0 0 0 0.0051528 2 13050 13008;13050 131.27 15.576 1 309250 20441 4378 12598 12607 24521;24522 24522 0.07150004885693306 KYPNLLNQL 9 Unmodified _KYPNLLNQL_ 0 0 0 ENST00000528400.1_1_8:42939784-42940422:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 551.8164672851562 2 551.816399 1101.61824 0.57471 0.00031713 -0.36631 -0.00020214 0.2084 0.000115 551.8162003090239 59.316 0.95636 62.803 62.223 63.18 3.4868 133 64 3 0 0 0 0.011285 1 12910 12910 69.105 6.5322 1 342830 20442 4378 12598 12607 24523 24523 0.07150004885693306 KYPNLLNQL 9 Unmodified _KYPNLLNQL_ 0 0 0 ENST00000528400.1_1_8:42939784-42940422:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF ENST00000528400.1_1_8:42939784-42940422:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 551.81689453125 2 551.816399 1101.61824 0.35692 0.00019695 -0.2349 -0.00012962 0.12202 6.7332E-05 551.8162974277647 59.038 1.0892 62.561 62.157 63.246 3.5231 117 77 2 0 0 0 0.0070866 1 12881 12881 71.922 6.6873 1 285080 20443 4378 12598 12607 24524 24524 0.07150004885693306 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_1 5 566.2975463867188 2 566.29731 1130.58007 0.45012 0.0002549 0.15624 8.8477E-05 0.60635 0.00034338 566.2972628568791 77.214 0.98413 80.725 80.272 81.256 3.5102 242 94 4 0 0 0 0.011285 5 18300 18250;18263;18300;18333;18372 99.799 55.941 1 3369600 20444 2933 12599 12608 24525;24526;24527;24528;24529 24527 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.2976684570312 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 77.366 1 80.888 80.388 81.388 3.5221 0 0 0 3.4270000000000004E-24 1 18409 18409 99.799 55.941 1 20445 2933 12599 12608 24530 24530 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.2974853515625 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 77.543 1 81.065 80.565 81.565 3.5221 0 0 0 1.8077E-06 1 18459 18459 69.105 24.698 1 20446 2933 12599 12608 24531 24531 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.2974243164062 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 77.698 1 81.22 80.72 81.72 3.5221 0 0 0 0.018698 1 18504 18504 53.833 17.789 1 20447 2933 12599 12608 24532 24532 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.2880249023438 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 77.731 1 81.253 80.753 81.753 3.5221 0 0 0 0.029402 1 18512 18512 45.7 5.7423 1 20448 2933 12599 12608 24533 24533 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.2901611328125 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 77.806 1 81.328 80.828 81.828 3.5221 0 0 0 0.029402 1 18535 18535 45.7 5.7423 1 20449 2933 12599 12608 24534 24534 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.2979736328125 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 79.064 1 82.6 82.1 83.1 3.5352 0 0 0 0.18866 1 18860 18860 17.113 7.7298 1 20450 2933 12599 12608 24535 24535 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_1 5 566.297607421875 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 79.214 1 82.749 82.249 83.249 3.5352 0 0 0 0.25702 1 18903 18903 13.042 0.80181 1 20451 2933 12599 12608 24536 24536 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_2 6 566.2977905273438 2 566.29731 1130.58007 0.48333 0.00027371 0.25711 0.0001456 0.74044 0.00041931 566.2974840039509 77.173 1.1385 80.785 80.169 81.307 3.6116 380 112 5 0 0 0 0.0047521 10 18245 18094;18136;18171;18210;18245;18278;18314;18351;18386;18388 147.06 81.824 1 8016000 20452 2933 12599 12608 24537;24538;24539;24540;24541;24542;24543;24544;24545;24546 24541 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_2 6 566.2900390625 2 566.29731 1130.58007 0.48373 0.00027393 2.2874 0.0012954 2.7712 0.0015693 566.2985475071043 77.986 0.13133 81.609 81.572 81.704 3.6222 16 13 2 0 0 0 0.057664 2 18500 18483;18500 45.7 9.6554 1 176970 20453 2933 12599 12608 24547;24548 24548 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_2 6 566.7998657226562 2 566.29731 1130.58007 0.48386 0.00027401 1.6938 0.00095919 2.1776 0.0012332 566.2982404346603 78.271 0.1722 81.893 81.87 82.042 3.6222 34 20 2 0 0 0 0.10568 2 18582 18574;18582 32.786 9.6373 1 117990 20454 2933 12599 12608 24549;24550 24550 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_2 6 566.7989501953125 2 566.29731 1130.58007 0.48401 0.00027409 0.56664 0.00032089 1.0506 0.00059498 566.2974464447037 78.616 0.17699 82.238 82.167 82.344 3.6222 38 22 2 0 0 0 0.23293 1 18644 18644 18.146 4.2403 1 123820 20455 2933 12599 12608 24551 24551 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_2 6 566.2966918945312 2 566.29731 1130.58007 0.48436 0.00027429 -0.2353 -0.00013325 0.24906 0.00014104 566.7989683613114 79.396 0.11451 83.03 82.996 83.11 3.6331 14 12 2 0 0 0 0.23293 1 18866 18866 18.146 3.5647 1 56721 20456 2933 12599 12608 24552 24552 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_2 6 566.2981567382812 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 78.459 1 82.082 81.582 82.582 3.6222 0 0 0 0.18866 1 18612 18612 17.113 7.7298 1 20457 2933 12599 12608 24553 24553 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_3 7 566.297607421875 2 566.29731 1130.58007 0.48796 0.00027633 0.24459 0.00013851 0.73254 0.00041484 566.2974986710125 77.143 1.2203 80.744 80.194 81.415 3.6016 412 114 5 0 0 0 0.0051528 11 18176 18068;18103;18138;18176;18211;18247;18287;18326;18361;18375;18396 144.35 80.787 1 8728700 20458 2933 12599 12608 24554;24555;24556;24557;24558;24559;24560;24561;24562;24563;24564 24557 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_3 7 566.7993774414062 2 566.29731 1130.58007 0.48423 0.00027422 0.95013 0.00053805 1.4344 0.00081227 566.2978373937806 78.524 0.40204 82.146 81.919 82.321 3.6215 63 49 2 0 0 0 0.17897 3 18588 18588;18619;18632 22.736 8.8302 1 124380 20459 2933 12599 12608 24565;24566;24567 24565 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN48_class_I_Rep_3 7 566.2975463867188 2 566.29731 1130.58007 0.48359 0.00027386 0.36908 0.00020901 0.85267 0.00048286 566.2974283306372 78.819 0.20606 82.441 82.321 82.527 3.6216 33 23 2 0 0 0 0.31407 1 18670 18670 13.042 3.6593 1 94847 20460 2933 12599 12608 24568 24568 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_3 7 566.29931640625 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 78.228 1 81.85 81.35 82.35 3.6216 0 0 0 0.10941 1 18512 18512 22.736 3.4793 1 20461 2933 12599 12608 24569 24569 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS UPN48_class_I_Rep_3 7 566.2974243164062 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 79.083 1 82.726 82.226 83.226 3.6423 0 0 0 0.34878 1 18741 18741 8.1555 2.8586 1 20462 2933 12599 12608 24570 24570 0.020001189710455947 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS UPN48_class_I_Rep_1 5 582.3504028320312 2 582.350409 1162.68626 0.42902 0.00024984 -0.04812 -2.8023E-05 0.3809 0.00022182 582.3502848998996 52.893 0.65393 56.412 55.93 56.584 3.5192 75 52 2 0 0 0 0.30034 2 10997 10997;11039 13.906 7.1829 1 214450 20463 4487 12600 12609 24571;24572 24571 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MSMS UPN48_class_I_Rep_1 5 582.3507080078125 2 582.350409 1162.68626 NaN NaN NaN NaN NaN NaN NaN 52.613 1 56.132 55.632 56.632 3.5192 0 0 0 0.37476 1 10958 10958 6.7232 0 1 20464 4487 12600 12609 24573 24573 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MSMS UPN48_class_I_Rep_2 6 582.35107421875 2 582.350409 1162.68626 NaN NaN NaN NaN NaN NaN NaN 52.382 1 56.021 55.521 56.521 3.639 0 0 0 0.2408 1 10875 10875 13.906 3.8321 1 20465 4487 12600 12609 24574 24574 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MSMS UPN48_class_I_Rep_2 6 582.3514404296875 2 582.350409 1162.68626 NaN NaN NaN NaN NaN NaN NaN 52.579 1 56.218 55.718 56.718 3.639 0 0 0 0.31276 1 10936 10936 10.074 0 1 20466 4487 12600 12609 24575 24575 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MSMS UPN48_class_I_Rep_2 6 582.3507690429688 2 582.350409 1162.68626 NaN NaN NaN NaN NaN NaN NaN 52.752 1 56.362 55.862 56.862 3.6098 0 0 0 0.31276 1 10990 10990 10.074 3.3508 1 20467 4487 12600 12609 24576 24576 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS UPN48_class_I_Rep_3 7 582.3499755859375 2 582.350409 1162.68626 0.35628 0.00020748 0.0054971 3.2013E-06 0.36178 0.00021068 582.3503168022147 52.715 0.76477 56.313 55.924 56.689 3.5979 82 55 2 0 0 0 0.36392 2 10903 10903;10954 10.074 6.1295 1 153550 20468 4487 12600 12609 24577;24578 24577 0.11142874536380987 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 MULTI-MSMS UPN48_class_I_Rep_1 5 558.8428344726562 2 558.842416 1115.67028 0.45943 0.00025675 -0.2953 -0.00016503 0.16413 9.1721E-05 558.8422049697416 46.505 0.95382 50.025 49.623 50.577 3.5192 106 62 2 0 0 0 0.31677 3 9060 9060;9102;9143 12.873 4.2055 1 246440 20469 5627 12601 12610 24579;24580;24581 24579 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 MULTI-MSMS UPN48_class_I_Rep_2 6 558.8427734375 2 558.842416 1115.67028 0.405 0.00022633 -0.31544 -0.00017628 0.089561 5.005E-05 558.8421386461831 46.236 0.93043 49.985 49.541 50.471 3.7494 105 60 2 0 0 0 0.33908 3 8980 8937;8980;9021 11.495 3.6646 1 291960 20470 5627 12601 12610 24582;24583;24584 24583 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 MULTI-MSMS UPN48_class_I_Rep_3 7 558.8427734375 2 558.842416 1115.67028 0.33423 0.00018678 -0.13362 -7.4675E-05 0.20061 0.00011211 558.8423521965886 46.432 0.67647 50.068 49.719 50.395 3.6363 60 40 2 0 0 0 0.36258 1 8966 8966 10.151 3.4274 1 203840 20471 5627 12601 12610 24585 24585 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 MSMS UPN48_class_I_Rep_3 7 558.8419799804688 2 558.842416 1115.67028 NaN NaN NaN NaN NaN NaN NaN 46.776 1 50.412 49.912 50.912 3.6363 0 0 0 0.39036 1 9110 9110 2.9952 0.69251 1 20472 5627 12601 12610 24586 24586 0.1170716829947196 KYPYWATKT 9 Unmodified _KYPYWATKT_ 0 0 0 REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|140|3|sense REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|140|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.3026123046875 2 579.303124 1156.5917 0.39827 0.00023072 -0.23256 -0.00013473 0.16571 9.5996E-05 579.3030832260833 48.722 0.72895 52.439 52.156 52.885 3.7175 88 50 2 0 0 0 0.30034 2 9825 9777;9825 13.906 2.2658 1 191960 + 20473 29007 12602 12611 24587;24588 24588 0.019663159943547726 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_1 5 568.30322265625 2 568.303321 1134.59209 0.56726 0.00032238 -0.7964 -0.0004526 -0.22914 -0.00013022 568.3029373906055 60.247 0.90609 63.72 63.292 64.198 3.4737 141 65 3 0 0 0 0.0046371 3 13273 13273;13314;13356 147.24 40.3 1 2131000 20474 3407 12603 12612 24589;24590;24591 24589 0.030176909235706262 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 568.303321 1134.59209 0.56025 0.00031839 -0.48732 -0.00027695 0.072932 4.1448E-05 568.3029936226083 60.048 0.79596 63.535 63.22 64.016 3.4868 -0.059209 -3.8622E-05 NaN 147.24 125 66 2 NaN NaN NaN NaN 0 NaN NaN 0 1639800 20475 3407 12603 12612 0.030176909235706262 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 568.303321 1134.59209 0.43267 0.00024589 -0.37612 -0.00021375 0.056549 3.2137E-05 568.3030791093611 60.011 0.83507 63.528 63.131 63.967 3.5169 -0.066654 8.777E-05 NaN 147.24 100 71 2 NaN NaN NaN NaN 0 NaN NaN 0 1760400 20476 3407 12603 12612 0.030176909235706262 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS UPN48_class_I_Rep_2 6 628.7826538085938 2 628.782753 1255.55095 0.44785 0.0002816 -0.045339 -2.8509E-05 0.40252 0.00025309 628.7826817649349 39.442 0.31024 43.171 42.977 43.287 3.7297 34 29 2 0 0 0 0.32682 1 6991 6991 12.241 2.8932 1 89114 20477 1132 12604 12613 24592 24592 -0.06660070115890449 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MSMS UPN48_class_I_Rep_2 6 628.78369140625 2 628.782753 1255.55095 NaN NaN NaN NaN NaN NaN NaN 39.602 1 43.332 42.832 43.832 3.7297 0 0 0 0.34878 1 7047 7047 8.1555 1.4324 1 20478 1132 12604 12613 24593 24593 -0.06660070115890449 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENST00000543590.1_1_12:123355407-123355842:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 584.3251953125 2 584.324057 1166.63356 0.51777 0.00030255 0.91581 0.00053513 1.4336 0.00083768 584.3245058083442 64.221 0.79012 67.695 67.459 68.249 3.4743 94 59 3 0 0 0 0.095207 6 14491 14452;14458;14491;14529;14568;14608 34.932 11.142 1 550860 20479 3153 12605 12614 24594;24595;24596;24597;24598;24599 24596 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENST00000543590.1_1_12:123355407-123355842:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 584.324057 1166.63356 0.52201 0.00030502 0.78248 0.00045722 1.3045 0.00076224 584.3243950245981 64.439 0.73067 67.893 67.515 68.245 3.4541 0.14882 -7.9877E-05 NaN 34.932 115 55 3 NaN NaN NaN NaN 0 NaN NaN 0 450290 20480 3153 12605 12614 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENST00000543590.1_1_12:123355407-123355842:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 584.324057 1166.63356 0.52307 0.00030564 0.87763 0.00051282 1.4007 0.00081846 584.3244726791822 64.136 0.8106 67.644 67.305 68.116 3.5083 -0.099941 3.1323E-05 NaN 34.932 142 69 3 NaN NaN NaN NaN 0 NaN NaN 0 416270 20481 3153 12605 12614 0.05690871682895704 KYQESNAYLF 10 Unmodified _KYQESNAYLF_ 0 0 0 REV__L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|63|2|sense REV__L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|63|2|sense MSMS UPN48_class_I_Rep_1 5 631.8056640625 2 631.806228 1261.5979 NaN NaN NaN NaN NaN NaN NaN 67.42 1 70.872 70.372 71.372 3.4516 0 0 0 0.53105 1 15494 15494 3.5965 0.31518 1 + 20482 25103 12606 12615 24600 24600 -0.022432105647794742 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MSMS UPN48_class_I_Rep_2 6 554.7852783203125 2 554.785296 1107.55604 0.49009 0.0002719 -0.46627 -0.00025868 0.02382 1.3215E-05 554.7849902944072 32.8 0.53799 36.45 36.192 36.73 3.6497 113 62 2 0 0 0 0.13455 1 5092 5092 27.223 8.8501 1 165180 20483 2905 12607 12616 24601 24601 0.006562337467130419 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MSMS UPN48_class_I_Rep_3 7 554.7854614257812 2 554.785296 1107.55604 0.29703 0.00016479 -0.29536 -0.00016386 0.0016709 9.2698E-07 554.7851504481338 32.682 0.62141 36.372 36.153 36.775 3.6896 131 73 2 0 0 0 0.12795 1 4976 4976 28.495 6.9044 1 187660 20484 2905 12607 12616 24602 24602 0.006562337467130419 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 554.785296 1107.55604 0.54429 0.00030197 -0.38528 -0.00021375 0.15901 8.8216E-05 554.7850577750349 32.929 0.60601 36.455 36.207 36.813 3.5266 0.029634 -1.9903E-05 NaN 28.495 102 65 2 NaN NaN NaN NaN 0 NaN NaN 0 166090 20485 2905 12607 12616 0.006562337467130419 KYQFRLLGP 9 Unmodified _KYQFRLLGP_ 0 0 0 MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|12|3|sense MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|12|3|sense MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.3269653320312 2 561.326934 1120.63931 0.34262 0.00019232 -0.40761 -0.0002288 -0.064993 -3.6483E-05 561.3266495278673 44.809 0.82732 48.446 48.099 48.927 3.6372 93 55 2 0 0 0 0.42249 1 8434 8434 6.7232 2.7788 1 152750 20486 15742 12608 12617 24603 24603 0.08382014985227215 KYQGFNIYK 9 Unmodified _KYQGFNIYK_ 0 0 0 L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|4|1|sense L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|4|1|sense L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8089599609375 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.090251 1 8642 8642 36.127 5.4905 1 1057600 20487 9073 12609 12618 24604 24604 0.02917718368644273 KYQIDKLI 8 Unmodified _KYQIDKLI_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553439.5_1_14:23944769-23944856:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MSMS UPN48_class_I_Rep_2 6 510.8080139160156 2 510.808042 1019.60153 0.40571 0.00020724 -0.25295 -0.00012921 0.15276 7.8033E-05 510.80780508807743 58.916 0.74771 62.415 62.105 62.853 3.4987 75 45 2 0 0 0 0.82752 1 12859 12859 6.7232 6.7232 1 224960 20488 2619 12610 12619 24605 24605 0.09251503999746546 KYQIEKYW 8 Unmodified _KYQIEKYW_ 0 0 0 REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|71|3|sense REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|71|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.3037109375 2 579.303124 1156.5917 0.39827 0.00023072 -0.23256 -0.00013473 0.16571 9.5996E-05 579.3030832260833 48.722 0.72895 52.439 52.156 52.885 3.7175 88 50 2 0 0 0 0.82752 1 9736 9736 21.747 4.8044 1 191960 + 20489 27669 12611 12620 24606 24606 0.0196631599437751 KYQIEKYW 8 Unmodified _KYQIEKYW_ 0 0 0 REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|71|3|sense REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|71|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.8030395507812 2 579.303124 1156.5917 0.39291 0.00022762 0.22573 0.00013077 0.61865 0.00035838 579.3031681927782 48.957 0.802 52.586 52.153 52.955 3.6291 129 61 3 0 0 0 0.82752 2 9685 9685;9711 23.148 2.6948 1 299430 + 20490 27669 12611 12620 24607;24608 24607 0.0196631599437751 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3 ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENST00000486530.1_1_3:148847510-148871436:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 592.3036499023438 2 592.303321 1182.59209 0.43864 0.00025981 0.41457 0.00024555 0.85321 0.00050536 592.3033384853819 53.391 0.71059 56.911 56.503 57.213 3.5192 131 51 3 0 0 0 0.0073203 2 11162 11162;11202 71.708 37.306 1 973440 20491 4037 12612 12621 24609;24610 24609 0.008096909235518979 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3 ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENST00000486530.1_1_3:148847510-148871436:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 592.3035278320312 2 592.303321 1182.59209 0.54741 0.00032423 0.23433 0.00013879 0.78173 0.00046302 592.3031394510776 53.199 0.73093 56.809 56.525 57.256 3.6098 116 46 3 0 0 0 0.0055879 1 11133 11133 80.676 45.744 1 796260 20492 4037 12612 12621 24611 24611 0.008096909235518979 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENST00000486530.1_1_3:148847510-148871436:+|nuORF;nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3 ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENST00000486530.1_1_3:148847510-148871436:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 592.3036499023438 2 592.303321 1182.59209 0.37371 0.00022135 0.59936 0.000355 0.97307 0.00057635 592.3033834876537 53.339 0.63637 56.923 56.546 57.182 3.5836 135 44 4 0 0 0 0.0060665 2 11071 11071;11112 107.1 59.351 1 760040 20493 4037 12612 12621 24612;24613 24612 0.008096909235518979 KYQIKYLKRRW 11 Unmodified _KYQIKYLKRRW_ 0 0 0 ENST00000315596.14_2_13:33160594-33223003:+|nuORF ENST00000315596.14_2_13:33160594-33223003:+|nuORF ENST00000315596.14_2_13:33160594-33223003:+|nuORF MSMS UPN47_class_I_Rep_1 2 528.2742919921875 3 527.98406 1580.93035 NaN NaN NaN NaN NaN NaN NaN 20.97 1 24.614 24.114 25.114 3.6436 0 0 0 0.38417 1 2201 2201 0 0 1 20494 6131 12613 12622 24614 24614 0.16312333630276044 KYQIKYLKRRW 11 Unmodified _KYQIKYLKRRW_ 0 0 0 ENST00000315596.14_2_13:33160594-33223003:+|nuORF ENST00000315596.14_2_13:33160594-33223003:+|nuORF ENST00000315596.14_2_13:33160594-33223003:+|nuORF MSMS UPN47_class_I_Rep_3 4 527.7533569335938 3 527.98406 1580.93035 NaN NaN NaN NaN NaN NaN NaN 20.232 1 23.583 23.083 24.083 3.351 0 0 0 0.38417 1 2048 2048 0 0 1 20495 6131 12613 12622 24615 24615 0.16312333630276044 KYQIKYLKRRW 11 Unmodified _KYQIKYLKRRW_ 0 0 0 ENST00000315596.14_2_13:33160594-33223003:+|nuORF ENST00000315596.14_2_13:33160594-33223003:+|nuORF ENST00000315596.14_2_13:33160594-33223003:+|nuORF MSMS UPN48_class_I_Rep_2 6 528.2568969726562 3 527.98406 1580.93035 NaN NaN NaN NaN NaN NaN NaN 25.102 1 28.739 28.239 29.239 3.6363 0 0 0 0.38417 1 3010 3010 0 0 1 20496 6131 12613 12622 24616 24616 0.16312333630276044 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_1 5 578.8114624023438 2 578.811116 1155.60768 0.39656 0.00022954 0.49609 0.00028714 0.89266 0.00051668 578.8109260320355 48.772 0.75397 52.296 51.901 52.655 3.5239 82 53 2 0 0 0 0.006828 2 9761 9761;9808 72.968 40.662 1 264140 20497 1030 12614 12623 24617;24618 24617 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS UPN48_class_I_Rep_2 6 579.3031005859375 2 578.811116 1155.60768 0.38636 0.00022363 0.023234 1.3448E-05 0.4096 0.00023708 578.8109490650902 48.385 0.70744 52.104 51.754 52.462 3.7184 67 52 2 0 0 0 0.066364 1 9697 9697 41.956 18.807 1 117210 20498 1030 12614 12623 24619 24619 0.03610022231282528 KYQLDTAF 8 Unmodified _KYQLDTAF_ 0 0 0 REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.25396728515625 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 38.421 1 41.926 41.426 42.426 3.5052 0 0 0 0.3903 1 6655 6655 11.64 0 1 + 20499 31567 12615 12624 24620 24620 -0.0012192133945063688 KYQLDTAF 8 Unmodified _KYQLDTAF_ 0 0 0 REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.2525329589844 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 38.476 1 41.981 41.481 42.481 3.5052 0 0 0 0.40157 1 6672 6672 7.2892 0 1 + 20500 31567 12615 12624 24621 24621 -0.0012192133945063688 KYQLDTAF 8 Unmodified _KYQLDTAF_ 0 0 0 REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.2537841796875 2 493.2531 984.491647 0.23218 0.00011452 -0.36023 -0.00017768 -0.12805 -6.3162E-05 493.2528385865709 38.207 0.50473 41.923 41.567 42.072 3.7164 69 45 2 0 0 0 0.82752 2 6582 6582;6616 11.64 0 1 97191 + 20501 31567 12615 12624 24622;24623 24622 -0.0012192133945063688 KYQLDTAF 8 Unmodified _KYQLDTAF_ 0 0 0 REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|57|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.2520751953125 2 493.2531 984.491647 0.15569 7.6795E-05 -0.19758 -9.7455E-05 -0.041887 -2.0661E-05 493.25294910840574 38.094 0.58644 41.754 41.546 42.133 3.6595 73 54 2 0 0 0 0.82752 3 6461 6461;6496;6575 7.9102 0 1 84370 + 20502 31567 12615 12624 24624;24625;24626 24624 -0.0012192133945063688 KYQNFAVYK 9 Unmodified _KYQNFAVYK_ 0 0 0 L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.808837890625 2 580.808574 1159.60259 0.40672 0.00023622 0.028781 1.6716E-05 0.4355 0.00025294 580.8084940370638 45.48 1.313 48.996 48.598 49.911 3.5162 233 92 4 0 0 0 0.090251 3 8780 8705;8780;8893 36.127 5.4905 1 785200 20503 11920 12616 12625 24627;24628;24629 24628 0.02917718368644273 KYQNFAVYK 9 Unmodified _KYQNFAVYK_ 0 0 0 L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.808837890625 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.035561 3 8678 8678;8793;8831 54.774 5.2372 1 1057600 20504 11920 12616 12625 24630;24631;24632 24630 0.02917718368644273 KYQNFAVYK 9 Unmodified _KYQNFAVYK_ 0 0 0 L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense L1MD1_dup1746|chr4:99912779-99913856:-|1.7839418610602955|0.1804114719896561|3.31|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.8090209960938 2 580.808574 1159.60259 0.40914 0.00023763 0.10627 6.1722E-05 0.51541 0.00029936 580.8085615316594 45.428 1.505 49.065 48.486 49.991 3.6369 252 103 3 0 0 0 0.10817 3 8624 8624;8820;8932 32.305 0 1 870350 20505 11920 12616 12625 24633;24634;24635 24633 0.02917718368644273 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS UPN48_class_I_Rep_1 5 561.3270263671875 2 561.326934 1120.63931 0.45189 0.00025366 -0.39429 -0.00022133 0.057598 3.2331E-05 561.3266360230899 44.939 0.68063 48.452 48.155 48.836 3.5132 90 50 2 0 0 0 0.20276 5 8651 8541;8567;8609;8651;8660 20.454 8.9589 1 179920 20506 3139 12617 12626 24636;24637;24638;24639;24640 24639 0.08382014985227215 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS UPN48_class_I_Rep_2 6 561.3270263671875 2 561.326934 1120.63931 0.41263 0.00023162 -0.34122 -0.00019154 0.071404 4.0081E-05 561.3266209976491 44.671 0.82854 48.433 48.008 48.836 3.7617 97 58 2 0 0 0 0.28552 4 8548 8459;8504;8548;8586 14.838 7.1829 1 219460 20507 3139 12617 12626 24641;24642;24643;24644 24643 0.08382014985227215 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MSMS UPN48_class_I_Rep_2 6 561.311279296875 2 561.326934 1120.63931 NaN NaN NaN NaN NaN NaN NaN 45.087 1 48.849 48.349 49.349 3.7617 0 0 0 0.37476 1 8668 8668 6.7232 2.3939 1 20508 3139 12617 12626 24645 24645 0.08382014985227215 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS UPN48_class_I_Rep_3 7 561.3267211914062 2 561.326934 1120.63931 0.34262 0.00019232 -0.40761 -0.0002288 -0.064993 -3.6483E-05 561.3266495278673 44.809 0.82732 48.446 48.099 48.927 3.6372 93 55 2 0 0 0 0.15122 5 8514 8473;8514;8518;8525;8569 25.399 13.905 1 152750 20509 3139 12617 12626 24646;24647;24648;24649;24650 24647 0.08382014985227215 KYQPVLFHE 9 Unmodified _KYQPVLFHE_ 0 0 0 HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.8084716796875 2 580.808574 1159.60259 0.40672 0.00023622 0.028781 1.6716E-05 0.4355 0.00025294 580.8084940370638 45.48 1.313 48.996 48.598 49.911 3.5162 233 92 4 0 0 0 0.061943 3 8743 8743;8816;8856 43.858 0 1 785200 20510 8041 12618 12627 24651;24652;24653 24651 0.029177183686670105 KYQPVLFHE 9 Unmodified _KYQPVLFHE_ 0 0 0 HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8086547851562 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.041849 2 8715 8715;8752 52.268 8.4101 1 1057600 20511 8041 12618 12627 24654;24655 24654 0.029177183686670105 KYQPVLFHE 9 Unmodified _KYQPVLFHE_ 0 0 0 HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.8087158203125 2 580.808574 1159.60259 0.40914 0.00023763 0.10627 6.1722E-05 0.51541 0.00029936 580.8085615316594 45.428 1.505 49.065 48.486 49.991 3.6369 252 103 3 0 0 0 0.041849 5 8661 8587;8661;8700;8740;8782 52.268 6.2474 1 870350 20512 8041 12618 12627 24656;24657;24658;24659;24660 24657 0.029177183686670105 KYQYLGNFK 9 Unmodified _KYQYLGNFK_ 0 0 0 REV__L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|37|2|sense REV__L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|37|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.3097534179688 2 580.808574 1159.60259 0.40672 0.00023622 0.028781 1.6716E-05 0.4355 0.00025294 580.8084940370638 45.48 1.313 48.996 48.598 49.911 3.5162 233 92 4 0 0 0 0.41259 5 8934 8934;8947;8966;8995;9047 7.2892 0 1 785200 + 20513 27435 12619 12628 24661;24662;24663;24664;24665 24661 0.02917718368644273 KYQYLGNFK 9 Unmodified _KYQYLGNFK_ 0 0 0 REV__L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|37|2|sense REV__L1MD2_dup7538|chr11:14553157-14554708:-|1.6825389009383285|0.1558523602989803|3.43|151.0|37|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8092651367188 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.46869 1 8913 8913 3.9444 0.3479 1 1057600 + 20514 27435 12619 12628 24666 24666 0.02917718368644273 KYQYWCWA 8 Unmodified _KYQYWCWA_ 0 0 0 REV__MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|10|2|sense REV__MLT1N2_dup5419|chr21:37382970-37383483:+|1.3960281930357163|0.0145866610781053|6.58|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 574.2529296875 2 574.25512 1146.49569 NaN NaN NaN NaN NaN NaN NaN 22.603 1 26.048 25.548 26.548 3.4447 0 0 0 0.40738 1 2709 2709 0.79363 0.10326 1 + 20515 31807 12620 12629 24667 24667 -0.0717015511736463 KYRCYKFI 8 Unmodified _KYRCYKFI_ 0 0 0 nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2 nc|ENSG00000288674|P49810-2|PSEN2 nc|ENSG00000288674|P49810-2|PSEN2 MSMS UPN47_class_I_Rep_1 2 560.8211669921875 2 560.802237 1119.58992 NaN NaN NaN NaN NaN NaN NaN 39.892 1 43.559 43.059 44.059 3.6668 0 0 0 0.4044 1 7851 7851 4.756 1.4747 1 20516 3326 12621 12630 24668 24668 0.03490983704773498 KYRFWKKR 8 Unmodified _KYRFWKKR_ 0 0 0 nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C;ENST00000378249.5_1_10:14977545-14995911:-|nuORF;ENST00000418843.5_2_10:14977491-14987187:-|nuORF nc|ENSG00000152457|Q96SD1-4|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C MSMS UPN46_class_I_Rep_3 1 606.361572265625 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 37.985 1 37.985 37.485 38.485 0 0 0 0 0.40746 1 7193 7193 0.69038 0 1 20517 3620 12622 12631 24669 24669 0.11180518724631838 KYRGKCEPTF 10 Unmodified _KYRGKCEPTF_ 0 0 0 nc|ENSG00000181322|Q86XW9-2|NME9;ENSG00000181322|ENST00000333911|NME9 nc|ENSG00000181322|Q86XW9-2|NME9 nc|ENSG00000181322|Q86XW9-2|NME9 MSMS UPN48_class_I_Rep_2 6 614.8081665039062 2 614.81079 1227.60703 NaN NaN NaN NaN NaN NaN NaN 56.459 1 59.992 59.492 60.492 3.5333 0 0 0 0.53105 1 12126 12126 1.4819 0 1 20518 4913 12623 12632 24670 24670 0.002328595199060146 KYRKFFLVY 9 Unmodified _KYRKFFLVY_ 0 0 0 L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|79|1|anti-sense L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|79|1|anti-sense L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|79|1|anti-sense MSMS UPN47_class_I_Rep_3 4 632.8527221679688 2 632.366059 1262.71756 NaN NaN NaN NaN NaN NaN NaN 79.939 1 83.248 82.748 83.748 3.309 0 0 0 0.40038 1 20004 20004 0.6015 0 1 20519 11266 12624 12633 24671 24671 0.09671447570462988 KYRKPTYRKKY 11 Unmodified _KYRKPTYRKKY_ 0 0 0 REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|20|2|sense REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|20|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 510.634765625 3 510.968299 1529.88307 0.3588 0.00018334 0.67587 0.00034535 1.0347 0.00052868 510.9685826764008 97.455 0.32341 101.24 101.13 101.45 3.7861 58 43 2 0 0 0 22.551 1 24164 24164 0.094841 0 1 147700 + 20520 27320 12625 12634 24672 24672 0.13932054359293033 KYRKPTYRKKY 11 Unmodified _KYRKPTYRKKY_ 0 0 0 REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|20|2|sense REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|20|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.9686279296875 3 510.968299 1529.88307 0.32051 0.00016377 0.4645 0.00023734 0.78501 0.00040111 510.96856826001533 96.694 0.24044 100.47 100.32 100.56 3.7804 51 30 2 0 0 0 0.68178 1 22971 22971 0.36667 0.27183 1 166160 + 20521 27320 12625 12634 24673 24673 0.13932054359293033 KYRKPTYRKKY 11 Unmodified _KYRKPTYRKKY_ 0 0 0 REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|20|2|sense REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 510.6344909667969 3 510.968299 1529.88307 0.32052 0.00016378 0.63322 0.00032355 0.95374 0.00048733 510.96855421948834 95.464 0.14425 99.244 99.163 99.307 3.7804 31 19 2 0 0 0 22.551 1 22672 22672 0.094841 0 1 134020 + 20522 27320 12625 12634 24674 24674 0.13932054359293033 KYRKYFEAT 9 Unmodified _KYRKYFEAT_ 0 0 0 REV__L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|31|1|sense REV__L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|31|1|sense MSMS UPN47_class_I_Rep_1 2 603.316650390625 2 603.319306 1204.62406 NaN NaN NaN NaN NaN NaN NaN 88.194 1 91.85 91.35 92.35 3.6563 0 0 0 0.39428 1 22054 22054 2.0598 0.21551 1 + 20523 30194 12626 12635 24675 24675 0.029931033973753074 KYRMIMLKL 9 Unmodified _KYRMIMLKL_ 0 0 0 L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|57|3|sense L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|57|3|sense L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|57|3|sense MSMS UPN48_class_I_Rep_3 7 598.3562622070312 2 598.356322 1194.69809 NaN NaN NaN NaN NaN NaN NaN 110.83 1 114.49 113.99 114.99 3.6654 0 0 0 0.40038 1 26293 26293 0.6015 0 1 20524 11306 12627 12636 24676 24676 0.10853031963688409 KYRPALVQ 8 Unmodified _KYRPALVQ_ 0 0 0 REV__ENST00000532676.1_1_11:6702431-6703624:-|nuORF REV__ENST00000532676.1_1_11:6702431-6703624:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.7921142578125 2 487.792727 973.5709 0.20919 0.00010204 -0.092753 -4.5244E-05 0.11644 5.6797E-05 487.79253024161824 31.407 1.1969 34.941 34.563 35.76 3.5342 303 122 3 0 0 0 0.82752 1 4865 4865 2.3027 0 1 597650 + 20525 19834 12628 12637 24677 24677 0.0830577040536582 KYRQRYSRG 9 Unmodified _KYRQRYSRG_ 0 0 0 REV__LTR39_dup988|chr15:30756989-30757594:-|1.1947335693420549|0.0199854870582637|5.9|151.0|32|2|anti-sense REV__LTR39_dup988|chr15:30756989-30757594:-|1.1947335693420549|0.0199854870582637|5.9|151.0|32|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 405.2995300292969 3 405.223139 1212.64759 -0.99977 -0.00040513 -0.033917 -1.3744E-05 -1.0337 -0.00041887 405.2231094306641 20.568 0.2366 23.975 23.816 24.053 3.4074 31 22 2 0 0 0 0.12509 1 2141 2141 1.1933 0 1 25371 + 20526 30912 12629 12638 24678 24678 0.04976961954548642 KYRRYRIWKRR 11 Unmodified _KYRRYRIWKRR_ 0 0 0 REV__ENSG00000205356|ENST00000447648|TECPR1 REV__ENSG00000205356|ENST00000447648|TECPR1 MSMS UPN47_class_I_Rep_2 3 561.0048828125 3 561.00597 1679.99608 NaN NaN NaN NaN NaN NaN NaN 101.04 1 104.54 104.04 105.04 3.5063 0 0 0 0.38417 1 24674 24674 0 0 1 + 20527 21219 12630 12639 24679 24679 0.1832816759583693 KYRVLVSAIY 10 Unmodified _KYRVLVSAIY_ 0 0 0 ENST00000479501.5_1_20:61943331-61950713:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1 ENST00000479501.5_1_20:61943331-61950713:+|nuORF ENST00000479501.5_1_20:61943331-61950713:+|nuORF MSMS UPN46_class_I_Rep_3 1 606.3611450195312 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 30.072 1 30.072 29.572 30.572 0 0 0 0 0.53105 1 4847 4847 1.3295 0 1 20528 1557 12631 12640 24680 24680 0.11046839845243994 KYRYYWHK 8 Unmodified _KYRYYWHK_ 0 0 0 REV__AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense REV__AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MSMS UPN46_class_I_Rep_3 1 622.3245239257812 2 622.322183 1242.62981 NaN NaN NaN NaN NaN NaN NaN 32.013 1 32.013 31.513 32.513 0 0 0 0 0.40746 1 5423 5423 0.69038 0.16561 1 + 20529 17043 12632 12641 24681 24681 0.018202466996854128 KYSEIIFLK 9 Unmodified _KYSEIIFLK_ 0 0 0 ENST00000490894.1_1_3:170102333-170102591:+|nuORF ENST00000490894.1_1_3:170102333-170102591:+|nuORF ENST00000490894.1_1_3:170102333-170102591:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 570.8369140625 2 570.8368 1139.65905 0.53058 0.00030288 -0.38184 -0.00021797 0.14874 8.4907E-05 570.8366499172645 63.051 0.42934 66.525 66.278 66.708 3.4738 40 31 2 0 0 0 0.40701 1 14125 14125 7.609 0 1 97678 20530 7066 12633 12642 24682 24682 0.09480346205327805 KYSEIIFLK 9 Unmodified _KYSEIIFLK_ 0 0 0 ENST00000490894.1_1_3:170102333-170102591:+|nuORF ENST00000490894.1_1_3:170102333-170102591:+|nuORF ENST00000490894.1_1_3:170102333-170102591:+|nuORF MSMS UPN48_class_I_Rep_3 7 570.8369750976562 2 570.8368 1139.65905 NaN NaN NaN NaN NaN NaN NaN 62.674 1 66.184 65.684 66.684 3.5104 0 0 0 0.37692 1 13950 13950 6.2058 0 1 20531 7066 12633 12642 24683 24683 0.09480346205327805 KYSEIIFLK 9 Unmodified _KYSEIIFLK_ 0 0 0 ENST00000490894.1_1_3:170102333-170102591:+|nuORF ENST00000490894.1_1_3:170102333-170102591:+|nuORF ENST00000490894.1_1_3:170102333-170102591:+|nuORF MSMS UPN48_class_I_Rep_3 7 570.8373413085938 2 570.8368 1139.65905 NaN NaN NaN NaN NaN NaN NaN 62.867 1 66.376 65.876 66.876 3.5091 0 0 0 0.3824 1 14008 14008 4.897 0 1 20532 7066 12633 12642 24684 24684 0.09480346205327805 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_1 5 543.2801513671875 2 543.279315 1084.54408 0.46047 0.00025016 -0.02421 -1.3153E-05 0.43626 0.00023701 543.2792508993388 54.935 0.64521 58.443 58.195 58.84 3.5082 80 41 3 0 0 0 0.21414 5 11695 11639;11643;11695;11736;11756 19.362 7.1213 1 189760 20533 5756;1078 12634 12643 24685;24686;24687;24688;24689 24687 0.005186170035358373 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_2 6 543.2786254882812 2 543.279315 1084.54408 0.59852 0.00032517 -0.50121 -0.0002723 0.097309 5.2866E-05 543.2791119124073 54.994 0.62095 58.55 58.152 58.773 3.5559 65 38 2 0 0 0 0.16799 4 11669 11589;11629;11669;11712 23.79 6.8784 1 196520 20534 5756;1078 12634 12643 24690;24691;24692;24693 24692 0.005186170035358373 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_3 7 543.2786254882812 2 543.279315 1084.54408 0.37581 0.00020417 -0.2718 -0.00014766 0.10401 5.6508E-05 543.2792330897347 54.865 0.73097 58.434 58.147 58.878 3.5694 66 42 2 0 0 0 0.17979 5 11571 11528;11571;11615;11661;11669 22.658 7.4096 1 191080 20535 5756;1078 12634 12643 24694;24695;24696;24697;24698 24695 0.005186170035358373 KYSFSIANDY 10 Unmodified _KYSFSIANDY_ 0 0 0 REV__ENSG00000085465|ENST00000369732|OVGP1 REV__ENSG00000085465|ENST00000369732|OVGP1 MSMS UPN47_class_I_Rep_1 2 604.2852783203125 2 604.285128 1206.5557 NaN NaN NaN NaN NaN NaN NaN 23.196 1 26.9 26.4 27.4 3.7042 0 0 0 0.53105 1 2829 2829 1.1933 0 1 + 20536 17954 12635 12644 24699 24699 -0.039311859731242293 KYSIFKGYL 9 Unmodified _KYSIFKGYL_ 0 0 0 L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|43|1|anti-sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|43|1|anti-sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|43|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 559.2479248046875 2 559.815867 1117.61718 0.40608 0.00022733 0.22672 0.00012692 0.6328 0.00035425 559.8158153027954 76.543 0.34782 79.958 79.864 80.211 3.4149 49 34 3 0 0 0 0.12157 1 19010 19010 6.2058 0 1 80349 20537 11581 12636 12645 24700 24700 0.06307790516802925 KYSIQPQKL 9 Unmodified _KYSIQPQKL_ 0 0 0 REV__Cheshire_dup547|chr9:33846309-33846831:-|1.3193530462621648|0.0096495483324918|7.1|151.0|25|1|anti-sense REV__Cheshire_dup547|chr9:33846309-33846831:-|1.3193530462621648|0.0096495483324918|7.1|151.0|25|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.823974609375 2 552.824224 1103.63389 0.4476 0.00024745 -0.85373 -0.00047196 -0.40612 -0.00022452 552.823636763339 49.749 1.008 53.444 53.038 54.046 3.6946 115 64 2 0 0 0 0.44742 1 10026 10026 5.2969 0 1 342040 + 20538 17412 12637 12646 24701 24701 0.08622291402753035 KYSKKKKKKR 10 Unmodified _KYSKKKKKKR_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN46_class_I_Rep_3 1 441.2971496582031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 100.23 1 100.23 99.729 100.73 0 0 0 0 0.53105 1 24430 24430 0.15932 0 1 20539 9406 12638 12647 24702 24702 0.22417277055819795 KYSKKKKKKR 10 Unmodified _KYSKKKKKKR_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN47_class_I_Rep_2 3 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.635 1 81.977 81.477 82.477 3.3428 0 0 0 0.53105 1 19540 19540 0.15932 0.064481 1 20540 9406 12638 12647 24703 24703 0.22417277055819795 KYSKKKKKKR 10 Unmodified _KYSKKKKKKR_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_2 6 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.315 1 45.066 44.566 45.566 3.7508 0 0 0 0.53105 1 7534 7534 0.15932 0.064481 1 20541 9406 12638 12647 24704 24704 0.22417277055819795 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN46_class_I_Rep_3 1 547.332763671875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 87.735 1 87.735 87.235 88.235 0 0 0 0 0.40746 1 21039 21039 0.69038 0 1 20542 9369 12639 12648 24705 24705 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN46_class_I_Rep_3 1 547.3325805664062 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 94.367 1 94.367 93.867 94.867 0 0 0 0 0.40746 1 22890 22890 0.69038 0 1 20543 9369 12639 12648 24706 24706 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN47_class_I_Rep_1 2 547.3328247070312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 68.787 1 72.151 71.651 72.651 3.3646 0 0 0 0.40746 1 16629 16629 0.69038 0 1 20544 9369 12639 12648 24707 24707 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN47_class_I_Rep_1 2 547.3331298828125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 99.036 1 102.83 102.33 103.33 3.7926 0 0 0 0.40746 1 24502 24502 0.69038 0 1 20545 9369 12639 12648 24708 24708 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN47_class_I_Rep_2 3 547.3331909179688 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 87.652 1 91.099 90.599 91.599 3.4471 0 0 0 0.40746 1 21788 21788 0.69038 0 1 20546 9369 12639 12648 24709 24709 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN47_class_I_Rep_2 3 547.163330078125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 100.03 1 103.53 103.03 104.03 3.4974 0 0 0 0.40746 1 24473 24473 0.69038 0 1 20547 9369 12639 12648 24710 24710 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 547.3309936523438 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 69.447 1 72.902 72.402 73.402 3.4548 0 0 0 0.40746 1 16112 16112 0.69038 0 1 20548 9369 12639 12648 24711 24711 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 547.3330688476562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 102.41 1 106.03 105.53 106.53 3.6164 0 0 0 0.40746 1 24694 24694 0.69038 0 1 20549 9369 12639 12648 24712 24712 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN48_class_I_Rep_2 6 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 69.754 1 73.275 72.775 73.775 3.5216 0 0 0 0.40746 1 16179 16179 0.69038 0 1 20550 9369 12639 12648 24713 24713 0.10899051448268438 KYSKKQRR 8 Unmodified _KYSKKQRR_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN48_class_I_Rep_3 7 547.3057250976562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 110.73 1 114.39 113.89 114.89 3.6654 0 0 0 0.40746 1 26273 26273 0.69038 0 1 20551 9369 12639 12648 24714 24714 0.10899051448268438 KYSKNPLL 8 Unmodified _KYSKNPLL_ 0 0 0 REV__L1MD_dup3992|chr7:158745336-158746098:+|2.813497382137333|0.4507045091207451|2.64|151.0|39|2|anti-sense REV__L1MD_dup3992|chr7:158745336-158746098:+|2.813497382137333|0.4507045091207451|2.64|151.0|39|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.1158447265625 2 481.78711 961.559667 0.18021 8.6821E-05 0.10322 4.9729E-05 0.28343 0.00013655 481.78706309042354 41.222 0.77042 44.973 44.6 45.371 3.7509 107 81 2 0 0 0 0.72333 1 7491 7491 1.8442 0 1 107670 + 20552 27268 12640 12649 24715 24715 0.07734948311224343 KYSLIKGNF 9 Unmodified _KYSLIKGNF_ 0 0 0 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 MULTI-MSMS UPN48_class_I_Rep_1 5 535.3056640625 2 535.305667 1068.59678 0.36125 0.00019338 -0.20087 -0.00010753 0.16038 8.5852E-05 535.3054305126432 41.611 1.0451 45.117 44.692 45.737 3.506 243 99 3 0 0 0 0.0070648 2 7624 7580;7624 107.1 67.142 1 791280 20553 3309 12641 12650 24716;24717 24717 0.06522619856991696 KYSLIKGNF 9 Unmodified _KYSLIKGNF_ 0 0 0 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 MULTI-MATCH UPN48_class_I_Rep_2 6 2 535.305667 1068.59678 0.38888 0.00020817 -0.26492 -0.00014181 0.12396 6.6355E-05 535.3053714323796 41.231 1.0258 44.982 44.592 45.618 3.7508 -0.047892 8.766E-06 NaN 107.1 287 110 3 NaN NaN NaN NaN 0 NaN NaN 0 760830 20554 3309 12641 12650 0.06522619856991696 KYSLIKGNF 9 Unmodified _KYSLIKGNF_ 0 0 0 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 MULTI-MATCH UPN48_class_I_Rep_3 7 2 535.305667 1068.59678 0.46116 0.00024686 -0.35563 -0.00019037 0.10553 5.6489E-05 535.3053369878362 41.345 1.0976 44.99 44.626 45.724 3.6458 -0.0395 -8.8348E-05 NaN 107.1 276 113 3 NaN NaN NaN NaN 0 NaN NaN 0 826750 20555 3309 12641 12650 0.06522619856991696 KYSLKFFWILV 11 Unmodified _KYSLKFFWILV_ 0 0 0 REV__L1ME1_dup10633|chr5:150748971-150749531:+|1.3611089698850556|0.0345573241436783|5.3|151.0|37|3|anti-sense REV__L1ME1_dup10633|chr5:150748971-150749531:+|1.3611089698850556|0.0345573241436783|5.3|151.0|37|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 481.2833557128906 3 481.951475 1442.83259 0.12151 5.856E-05 1.3288 0.00064044 1.4504 0.000699 481.95215691803975 94.146 0.10458 97.767 97.724 97.828 3.6208 17 12 2 0 0 0 22.551 1 22638 22638 0.50596 0 1 83814 + 20556 27562 12642 12651 24718 24718 0.12889131981592072 KYSPFVVSF 9 Unmodified _KYSPFVVSF_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-SECPEP UPN48_class_I_Rep_2 6 537.8314819335938 2 537.286943 1072.55933 0.48186 0.0002589 -0.10344 -5.5576E-05 0.37842 0.00020332 537.2867056858618 66.088 0.39603 69.574 69.515 69.911 3.4866 69 29 3 0 0 0 0.11446 1 15162 15162 14.405 1.3629 1 256990 20557 1281 12643 12652 24719 24719 0.0259552859138239 KYSPFVVSF 9 Unmodified _KYSPFVVSF_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MATCH UPN48_class_I_Rep_3 7 2 537.286943 1072.55933 0.61088 0.00032822 -0.095147 -5.1121E-05 0.51574 0.0002771 537.2866923974594 65.874 0.83893 69.382 69.069 69.908 3.5077 -0.096197 3.5606E-06 NaN 23.79 128 58 3 NaN NaN NaN NaN 0 NaN NaN 0 255080 20558 1281 12643 12652 0.0259552859138239 KYSQTMYLI 9 Unmodified _KYSQTMYLI_ 0 0 0 L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|39|2|sense L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|39|2|sense L1MB1_dup2503|chr7:107497231-107499321:+|1.109644132557566|0.0223196386190099|5.64|151.0|39|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.7968139648438 2 573.796817 1145.57908 0.33161 0.00019028 0.26855 0.00015409 0.60016 0.00034437 573.7969634905013 53.01 0.60725 56.594 56.285 56.892 3.5836 43 36 2 0 0 0 0.39745 1 10986 10986 8.1555 0.8663 1 111650 20559 10172 12644 12653 24720 24720 0.012115365398358335 KYSRNKKKKRR 11 Unmodified _KYSRNKKKKRR_ 0 0 0 REV__ENSG00000179083|ENST00000683942|FAM133A REV__ENSG00000179083|ENST00000683942|FAM133A MSMS UPN47_class_I_Rep_1 2 497.9837341308594 3 497.982942 1490.927 NaN NaN NaN NaN NaN NaN NaN 90.409 1 94.099 93.599 94.599 3.6899 0 0 0 0.38417 1 22588 22588 0.094841 0 1 + 20560 20668 12645 12654 24721 24721 0.2011708357626958 KYTEITATYF 10 Unmodified _KYTEITATYF_ 0 0 0 AGL|p.K1314Rfs*13|1|0.04|ENSG00000162688|chr1:99912506-99912507|-/GAGG|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL AGL|p.K1314Rfs*13|1|0.04|ENSG00000162688|chr1:99912506-99912507|-/GAGG|frameshift_variant AGL|p.K1314Rfs*13|1|0.04|ENSG00000162688|chr1:99912506-99912507|-/GAGG|frameshift_variant MSMS UPN48_class_I_Rep_3 7 618.8109130859375 2 618.810979 1235.6074 NaN NaN NaN NaN NaN NaN NaN 55.407 1 58.962 58.462 59.462 3.5554 0 0 0 0.53105 1 11742 11742 4.1895 0.24511 1 20561 3 12646 12655 24722 24722 -0.0009744227925239102 KYTIFYPFY 9 Unmodified _KYTIFYPFY_ 0 0 0 REV__ENST00000392204.6_1_19:36036533-36036719:+|nuORF REV__ENST00000392204.6_1_19:36036533-36036719:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.3143920898438 2 621.3157 1240.61685 NaN NaN NaN NaN NaN NaN NaN 67.316 1 70.507 70.007 71.007 3.1914 0 0 0 0.40038 1 16291 16291 0.6015 0 1 + 20562 18302 12647 12656 24723 24723 0.006163707969562893 KYTIHYSFV 9 Unmodified _KYTIHYSFV_ 0 0 0 REV__ENSG00000111799|ENST00000322507|COL12A1 REV__ENSG00000111799|ENST00000322507|COL12A1 MULTI-MSMS UPN48_class_I_Rep_2 6 579.8048706054688 2 579.303124 1156.5917 0.39827 0.00023072 -0.23256 -0.00013473 0.16571 9.5996E-05 579.3030832260833 48.722 0.72895 52.439 52.156 52.885 3.7175 88 50 2 0 0 0 0.26948 1 9722 9722 15.847 1.0089 1 191960 + 20563 18466 12648 12657 24724 24724 0.019663159943547726 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS UPN48_class_I_Rep_1 5 588.3077392578125 2 588.308406 1174.60226 0.40104 0.00023593 0.34041 0.00020026 0.74144 0.0004362 588.3085101365463 47.655 0.98935 51.177 50.759 51.749 3.5219 181 77 3 0 0 0 0.0062637 7 9402 9347;9361;9385;9402;9440;9480;9521 115.06 69.359 1 662370 20564 796 12649 12658 24725;24726;24727;24728;24729;24730;24731 24728 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS UPN48_class_I_Rep_2 6 588.308837890625 2 588.308406 1174.60226 0.38418 0.00022602 0.59062 0.00034747 0.9748 0.00057349 588.3086514516631 47.294 1.0838 51.03 50.566 51.65 3.7361 197 90 3 0 0 0 0.0066811 5 9314 9280;9314;9349;9385;9424 111.31 57.476 1 438390 20565 796 12649 12658 24732;24733;24734;24735;24736 24733 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS UPN48_class_I_Rep_3 7 588.3089599609375 2 588.308406 1174.60226 0.42976 0.00025283 0.42052 0.0002474 0.85028 0.00050023 588.3085401746455 47.53 0.91291 51.164 50.765 51.678 3.6339 158 74 3 0 0 0 0.0062637 6 9319 9248;9285;9319;9354;9393;9434 101.54 55.844 1 452060 20566 796 12649 12658 24737;24738;24739;24740;24741;24742 24739 0.02194298648782933 KYTKKKKRR 9 Unmodified _KYTKKKKRR_ 0 0 0 L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|18|1|sense L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|18|1|sense L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|18|1|sense MSMS UPN48_class_I_Rep_3 7 618.40478515625 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 78.73 1 82.352 81.852 82.852 3.6216 0 0 0 0.40038 1 18645 18645 0.6015 0.25087 1 20567 8907 12650 12659 24743 24743 0.19060148333210236 KYTLLAEKV 9 Unmodified _KYTLLAEKV_ 0 0 0 REV__ENSG00000165078|ENST00000297770|CPA6 REV__ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS UPN47_class_I_Rep_1 2 532.8215942382812 2 532.82115 1063.62775 0.34082 0.0001816 0.18787 0.0001001 0.52869 0.0002817 532.8211725653806 64.644 0.31638 68 67.889 68.205 3.3557 49 28 2 0 0 0 0.44742 1 15385 15385 5.2969 1.7004 1 89150 + 20568 20101 12651 12660 24744 24744 0.09847773171213703 KYTLLAEKV 9 Unmodified _KYTLLAEKV_ 0 0 0 REV__ENSG00000165078|ENST00000297770|CPA6 REV__ENSG00000165078|ENST00000297770|CPA6 MULTI-MATCH UPN47_class_I_Rep_2 3 2 532.82115 1063.62775 0.24604 0.0001311 0.2498 0.0001331 0.49584 0.0002642 532.8212629993745 64.833 0.27243 68.088 67.998 68.271 3.2556 0.044368 3.2236E-05 NaN 5.2969 35 22 2 NaN NaN NaN NaN 0 NaN NaN 0 106280 + 20569 20101 12651 12660 0.09847773171213703 KYTTCTDWVK 10 Unmodified _KYTTCTDWVK_ 0 0 0 REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MSMS UPN48_class_I_Rep_2 6 622.8018188476562 2 622.802631 1243.59071 NaN NaN NaN NaN NaN NaN NaN 67.203 1 70.7 70.2 71.2 3.4964 0 0 0 0.53105 1 15413 15413 4.897 0.36815 1 + 20570 18983 12652 12661 24745 24745 -0.021342664368603437 KYTTKWTTF 9 Unmodified _KYTTKWTTF_ 0 0 0 REV__L1ME3_dup811|chr2:25774385-25775089:-|1.6225277170351096|0.014152993850094|6.84|151.0|7|1|sense REV__L1ME3_dup811|chr2:25774385-25775089:-|1.6225277170351096|0.014152993850094|6.84|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.3086547851562 2 588.308406 1174.60226 0.40104 0.00023593 0.34041 0.00020026 0.74144 0.0004362 588.3085101365463 47.655 0.98935 51.177 50.759 51.749 3.5219 181 77 3 0 0 0 0.38714 1 9561 9561 8.7454 0.58988 1 662370 + 20571 27968 12653 12662 24746 24746 0.02194298648782933 KYVAPPFMF 9 Unmodified _KYVAPPFMF_ 0 0 0 REV__L1MB3_dup8376|chr9:77765325-77766237:+|2.9770747382704745|0.0317422868415334|6.55|151.0|58|3|anti-sense REV__L1MB3_dup8376|chr9:77765325-77766237:+|2.9770747382704745|0.0317422868415334|6.55|151.0|58|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2864990234375 2 550.285889 1098.55722 NaN NaN NaN NaN NaN NaN NaN 40.767 1 44.273 43.773 44.773 3.506 0 0 0 0.381 1 7351 7351 5.2307 1.2863 1 + 20572 25920 12654 12663 24747 24747 0.011887765819210472 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2 ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENST00000561636.2_1_15:43423309-43423531:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 541.7982177734375 2 541.797675 1081.5808 0.55691 0.00030173 0.14838 8.0394E-05 0.70529 0.00038213 541.7977263107057 60.35 0.71218 63.824 63.503 64.215 3.4737 93 50 2 0 0 0 0.073198 3 13326 13279;13326;13364 40.239 17.503 1 338170 20573 2246 12655 12664 24748;24749;24750 24749 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2 ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENST00000561636.2_1_15:43423309-43423531:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 541.7979736328125 2 541.797675 1081.5808 0.55254 0.00029936 0.17429 9.4431E-05 0.72683 0.00039379 541.7977967650602 60.332 0.66455 63.811 63.511 64.175 3.4785 116 57 3 0 0 0 0.10225 3 13320 13243;13283;13320 33.445 13.03 1 265070 20574 2246 12655 12664 24751;24752;24753 24753 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2 ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENST00000561636.2_1_15:43423309-43423531:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 541.7976684570312 2 541.797675 1081.5808 0.51013 0.00027639 0.0954 5.1688E-05 0.60553 0.00032808 541.7975700894153 60.164 0.55108 63.681 63.452 64.003 3.5169 106 47 3 0 0 0 0.029742 3 13166 13126;13166;13207 57.249 30.981 1 307790 20575 2246 12655 12664 24754;24755;24756 24755 0.043269136200933644 KYVHFFFF 8 Unmodified _KYVHFFFF_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|102|1|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|102|1|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|102|1|anti-sense MSMS UPN46_class_I_Rep_3 1 567.7920532226562 2 567.792195 1133.56984 NaN NaN NaN NaN NaN NaN NaN 66.862 1 66.862 66.362 67.362 0 0 0 0 0.40746 1 15192 15192 0.69038 0 1 20576 7723 12656 12665 24757 24757 0.008395560364760968 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS UPN48_class_I_Rep_1 5 587.3191528320312 2 587.318774 1172.623 0.4333 0.00025448 0.2886 0.0001695 0.7219 0.00042399 587.3188957883632 52.968 0.8721 56.487 56.045 56.917 3.5192 132 64 3 0 0 0 0.073198 5 11029 10987;10994;11029;11085;11131 40.239 24.392 1 339170 20577 702 12657 12666 24758;24759;24760;24761;24762 24760 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS UPN48_class_I_Rep_2 6 587.3189697265625 2 587.318774 1172.623 0.53299 0.00031303 0.24067 0.00014135 0.77365 0.00045438 587.3188653228009 52.785 0.84722 56.395 56.074 56.922 3.6098 98 53 2 0 0 0 0.12096 4 10989 10948;10989;11112;11130 29.841 19.017 1 314470 20578 702 12657 12666 24763;24764;24765;24766 24764 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS UPN48_class_I_Rep_3 7 587.31982421875 2 587.318774 1172.623 0.36656 0.00021529 0.51034 0.00029973 0.8769 0.00051502 587.3189638479226 52.991 0.79315 56.575 56.099 56.892 3.5836 112 51 3 0 0 0 0.038999 4 10953 10893;10904;10953;11020 53.404 37.557 1 352660 20579 702 12657 12666 24767;24768;24769;24770 24769 0.043588890284581794 KYVKLYYW 8 Unmodified _KYVKLYYW_ 0 0 0 REV__L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|30|1|anti-sense REV__L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_2 6 581.8148803710938 2 581.81841 1161.62227 NaN NaN NaN NaN NaN NaN NaN 65.913 1 69.399 68.899 69.899 3.4866 0 0 0 0.40404 1 15018 15018 5.2307 1.2863 1 + 20580 28211 12658 12667 24771 24771 0.04792094379399714 KYVPHAQL 8 Unmodified _KYVPHAQL_ 0 0 0 ENSG00000258890.7,CEP95,chr17,+,I8.1,64520577,64521401|23|8.29|1|intron ENSG00000258890.7,CEP95,chr17,+,I8.1,64520577,64521401|23|8.29|1|intron ENSG00000258890.7,CEP95,chr17,+,I8.1,64520577,64521401|23|8.29|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 478.27215576171875 2 478.271627 954.528701 0.16223 7.7589E-05 -0.049941 -2.3885E-05 0.11229 5.3704E-05 478.27157775119815 42.433 0.78199 46.191 45.862 46.644 3.7579 105 73 2 0 0 0 0.82752 2 7844 7844;7888 13.508 0 1 156710 20581 5774 12659 12668 24772;24773 24772 0.04961794996984281 KYVRELKKT 9 Unmodified _KYVRELKKT_ 0 0 0 ENSG00000125445|ENST00000245539|MRPS7 ENSG00000125445|ENST00000245539|MRPS7 ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS UPN47_class_I_Rep_1 2 582.8592529296875 2 582.858598 1163.70264 0.49706 0.00028972 1.0021 0.0005841 1.4992 0.00087382 582.8589622508512 108.45 0.10683 112.08 112.03 112.13 3.6355 23 7 4 0 0 0 0.47493 1 26646 26646 3.2813 1.4371 1 4894400 20582 2504 12660 12669 24774 24774 0.12733955702469757 KYVRQRQR 8 Unmodified _KYVRQRQR_ 0 0 0 REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|38|3|sense REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|38|3|sense MSMS UPN47_class_I_Rep_1 2 567.3375854492188 2 567.336156 1132.65776 NaN NaN NaN NaN NaN NaN NaN 99.127 1 102.92 102.42 103.42 3.7926 0 0 0 0.40625 1 24524 24524 2.3027 0.4585 1 + 20583 24264 12661 12670 24775 24775 0.09673569679785032 KYVRTYTY 8 Unmodified _KYVRTYTY_ 0 0 0 REV__L1MB3_dup920|chr1:154440119-154440655:-|1.4744745834355253|0.0473142887605218|4.96|151.0|26|1|anti-sense REV__L1MB3_dup920|chr1:154440119-154440655:-|1.4744745834355253|0.0473142887605218|4.96|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 547.3042602539062 2 547.287474 1092.5604 NaN NaN NaN NaN NaN NaN NaN 24.353 1 27.992 27.492 28.492 3.6397 0 0 0 0.40746 1 2812 2812 0.69038 0.088878 1 + 20584 25933 12662 12671 24776 24776 0.017817429602928314 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_1 5 566.7933349609375 2 566.792924 1131.57129 0.42584 0.00024136 -0.27362 -0.00015509 0.15222 8.6277E-05 566.7926750259919 43.523 0.97969 47.034 46.677 47.657 3.5103 162 81 3 0 0 0 0.077454 7 8184 8104;8142;8184;8221;8261;8264;8311 39.213 16.355 1 357990 20585 2487 12663 12672 24777;24778;24779;24780;24781;24782;24783 24779 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_2 6 566.7929077148438 2 566.792924 1131.57129 0.41664 0.00023615 -0.24023 -0.00013616 0.17641 9.9989E-05 566.7926973918405 43.223 0.97985 46.985 46.569 47.549 3.7617 185 76 3 0 0 0 0.048729 8 8069 7986;8028;8069;8107;8151;8189;8226;8249 49.527 29.074 1 473530 20586 2487 12663 12672 24784;24785;24786;24787;24788;24789;24790;24791 24786 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_2 6 567.3136596679688 2 566.792924 1131.57129 0.41275 0.00023394 1.0852 0.00061509 1.498 0.00084903 566.7929138266594 43.844 0.072128 47.605 47.562 47.634 3.7617 7 4 2 0 0 0 0.44742 1 8280 8280 5.2969 0.96765 1 34151 20587 2487 12663 12672 24792 24792 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS UPN48_class_I_Rep_3 7 566.79296875 2 566.792924 1131.57129 0.36426 0.00020646 -0.27745 -0.00015726 0.086809 4.9203E-05 566.7926897883972 43.358 0.99728 46.996 46.574 47.571 3.6385 157 75 3 0 0 0 0.065535 7 8019 7954;7980;8019;8059;8140;8173;8189 42.312 28.406 1 347830 20588 2487 12663 12672 24793;24794;24795;24796;24797;24798;24799 24795 0.01077145334556917 KYVTVYNLI 9 Unmodified _KYVTVYNLI_ 0 0 0 ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;ENSG00000138592.14,USP8,chr15,+,I20.1,50494281,50495847|28|4.73|1|intron;ENSG00000138592|ENST00000307179|USP8 ENST00000560954.5_1_15:50731270-50751199:+|nuORF ENST00000560954.5_1_15:50731270-50751199:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 556.8214721679688 2 556.82115 1111.62775 0.42589 0.00023714 -0.38529 -0.00021454 0.040599 2.2607E-05 556.8209530031216 63.744 0.25967 67.253 67.169 67.429 3.5091 24 18 2 0 0 0 0.43982 1 14284 14284 5.7319 0 1 136300 20589 3094 12664 12673 24800 24800 0.07639773171217712 KYVVYLQTKK 10 Unmodified _KYVVYLQTKK_ 0 0 0 REV__L1MEf_dup7411|chr10:48917292-48918688:+|1.1975968689585268|0.0225173151896966|5.73|151.0|13|1|sense REV__L1MEf_dup7411|chr10:48917292-48918688:+|1.1975968689585268|0.0225173151896966|5.73|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 635.3848876953125 2 635.381906 1268.74926 NaN NaN NaN NaN NaN NaN NaN 88.191 1 91.578 91.078 92.078 3.3873 0 0 0 0.53105 1 22118 22118 1.4819 0.28856 1 + 20590 28684 12665 12674 24801 24801 0.12563395533720723 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS UPN48_class_I_Rep_1 5 557.3131713867188 2 557.313158 1112.61176 0.5671 0.00031605 -0.041615 -2.3193E-05 0.52548 0.00029286 557.313082970192 57.004 0.69754 60.499 60.218 60.915 3.4942 109 58 2 0 0 0 0.037922 3 12311 12271;12311;12349 53.833 29.812 1 287850 20591 4784 12666 12675 24802;24803;24804 24803 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MSMS UPN48_class_I_Rep_1 5 557.7467651367188 2 557.313158 1112.61176 NaN NaN NaN NaN NaN NaN NaN 57.456 1 60.951 60.451 61.451 3.4942 0 0 0 0.20399 1 12451 12451 16.149 6.766 1 20592 4784 12666 12675 24805 24805 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS UPN48_class_I_Rep_2 6 557.3131713867188 2 557.313158 1112.61176 0.60418 0.00033672 -0.26167 -0.00014583 0.34251 0.00019089 557.312890871265 57.021 0.58084 60.554 60.298 60.879 3.5333 96 49 3 0 0 0 0.057664 3 12355 12247;12308;12355 45.7 26.044 1 345440 20593 4784 12666 12675 24806;24807;24808 24808 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MSMS UPN48_class_I_Rep_2 6 557.7471923828125 2 557.313158 1112.61176 NaN NaN NaN NaN NaN NaN NaN 57.364 1 60.878 60.378 61.378 3.5142 0 0 0 0.20399 1 12401 12401 16.149 6.766 1 20594 4784 12666 12675 24809 24809 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS UPN48_class_I_Rep_3 7 557.314208984375 2 557.313158 1112.61176 0.31927 0.00017793 0.13313 7.4197E-05 0.4524 0.00025213 557.3131665185601 56.857 0.71129 60.399 60.132 60.844 3.5427 130 73 2 0 0 0 0.025281 6 12203 12126;12165;12203;12238;12253;12285 60.074 29.437 1 380740 20595 4784 12666 12675 24810;24811;24812;24813;24814;24815 24812 0.05996066934335431 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MSMS UPN48_class_I_Rep_1 5 603.3031005859375 2 603.303124 1204.5917 NaN NaN NaN NaN NaN NaN NaN 64.729 1 68.183 67.683 68.683 3.4541 0 0 0 0.53105 1 14676 14676 12.241 4.0851 1 20596 983 12667 12676 24816 24816 -0.002416840056412184 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MSMS UPN48_class_I_Rep_3 7 603.3019409179688 2 603.303124 1204.5917 0.57135 0.0003447 0.15394 9.2871E-05 0.72529 0.00043757 603.3030727216553 64.472 0.22166 67.98 67.852 68.074 3.5083 34 19 2 0 0 0 0.53004 1 14517 14517 8.1555 1.0538 1 106480 20597 983 12667 12676 24817 24817 -0.002416840056412184 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MSMS UPN48_class_I_Rep_3 7 603.3035888671875 2 603.303124 1204.5917 NaN NaN NaN NaN NaN NaN NaN 64.575 1 68.083 67.583 68.583 3.5083 0 0 0 0.53105 1 14528 14528 6.7232 0.51738 1 20598 983 12667 12676 24818 24818 -0.002416840056412184 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 ENSG00000063244|ENST00000308924|U2AF2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 603.303124 1204.5917 0.53218 0.00032107 0.12213 7.3684E-05 0.65432 0.00039475 603.3029212216595 64.441 0.16643 67.895 67.77 67.936 3.4541 -0.042441 -2.2727E-05 NaN 8.1555 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 88953 20599 983 12667 12676 -0.002416840056412184 KYWILWIIDNK 11 Unmodified _KYWILWIIDNK_ 0 0 0 REV__MER4-int_dup252|chr2:85380825-85381835:-|1.057086177188785|0.3179565343463262|1.73|151.0|11|1|sense REV__MER4-int_dup252|chr2:85380825-85381835:-|1.057086177188785|0.3179565343463262|1.73|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 497.95147705078125 3 497.950134 1490.82857 NaN NaN NaN NaN NaN NaN NaN 21.183 1 24.728 24.228 25.228 3.5454 0 0 0 0.38417 1 1898 1898 1.9275 0.71267 1 + 20600 31278 12668 12677 24819 24819 0.10279042487877632 KYWQTKFSS 9 Unmodified _KYWQTKFSS_ 0 0 0 L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|26|1|sense;L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|89|2|sense;L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|40|1|sense;L1PA7_dup8060|chrX:72446693-72449580:+|2.389075337778254|0.0299244654005379|6.32|151.0|30|2|sense L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|26|1|sense L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|26|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.7962036132812 2 587.798206 1173.58186 0.39767 0.00023375 0.071786 4.2196E-05 0.46946 0.00027595 587.7978638845743 45.174 0.6995 48.932 48.638 49.338 3.7579 75 52 2 0 0 0 0.49187 1 8655 8655 1.4819 0.15237 1 160400 20601 14395 12669 12678 24820 24820 0.0020112798899845075 KYWQTKRR 8 Unmodified _KYWQTKRR_ 0 0 0 REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MSMS UPN47_class_I_Rep_1 2 583.3336791992188 2 583.333082 1164.65161 NaN NaN NaN NaN NaN NaN NaN 88.499 1 92.155 91.655 92.655 3.6563 0 0 0 0.40746 1 22133 22133 0.69038 0 1 + 20602 19802 12670 12679 24821 24821 0.07587051448263082 KYWQTKRR 8 Unmodified _KYWQTKRR_ 0 0 0 REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MSMS UPN48_class_I_Rep_1 5 583.3330688476562 2 583.333082 1164.65161 NaN NaN NaN NaN NaN NaN NaN 86.598 1 90.21 89.71 90.71 3.613 0 0 0 0.40746 1 20749 20749 0.69038 0 1 + 20603 19802 12670 12679 24822 24822 0.07587051448263082 KYYAAIAGWW 10 Unmodified _KYYAAIAGWW_ 0 0 0 REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF MSMS UPN48_class_I_Rep_1 5 614.8088989257812 2 614.811116 1227.60768 NaN NaN NaN NaN NaN NaN NaN 32.445 1 35.972 35.472 36.472 3.5266 0 0 0 0.53105 1 4935 4935 1.4819 0.28856 1 + 20604 22516 12671 12680 24823 24823 0.002980222312544356 KYYFLTHSV 9 Unmodified _KYYFLTHSV_ 0 0 0 L1MB5_dup9562|chr22:24374784-24375672:+|3.53982062878526|0.0659697199021777|5.75|151.0|28|3|sense L1MB5_dup9562|chr22:24374784-24375672:+|3.53982062878526|0.0659697199021777|5.75|151.0|28|3|sense L1MB5_dup9562|chr22:24374784-24375672:+|3.53982062878526|0.0659697199021777|5.75|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.8051147460938 2 579.303124 1156.5917 0.39892 0.00023109 -0.2973 -0.00017223 0.10162 5.8868E-05 579.3028207152117 48.929 0.72611 52.453 52.154 52.88 3.5239 117 56 3 0 0 0 0.25207 1 9852 9852 16.942 0 1 238150 20605 10664 12672 12681 24824 24824 0.019663159943547726 KYYIYWVL 8 Unmodified _KYYIYWVL_ 0 0 0 REV__L1MC2_dup5304|chr16:29546287-29546787:+|1.7854000028020278|0.2175292564420544|3.04|151.0|32|3|anti-sense REV__L1MC2_dup5304|chr16:29546287-29546787:+|1.7854000028020278|0.2175292564420544|3.04|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_3 7 574.309814453125 2 574.312961 1146.61137 NaN NaN NaN NaN NaN NaN NaN 44.139 1 47.777 47.277 48.277 3.6385 0 0 0 0.40581 1 8300 8300 2.8892 0 1 + 20606 26686 12673 12682 24825 24825 0.04392692005126264 KYYKPYIGLLP 11 Unmodified _KYYKPYIGLLP_ 0 0 0 REV__L1PA6_dup2859|chr7:91982208-91983047:-|1.2755473104973067|0.0159261771554867|6.32|151.0|3|1|sense REV__L1PA6_dup2859|chr7:91982208-91983047:-|1.2755473104973067|0.0159261771554867|6.32|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.2632751464844 3 452.26383 1353.76966 0.16421 7.4268E-05 -1.9181 -0.00086749 -1.7539 -0.00079322 452.2628724480595 60.609 0.20391 64.122 64.052 64.256 3.5128 30 21 2 0 0 0 0.68081 1 13361 13361 0.45452 0.046251 1 136910 + 20607 29863 12674 12683 24826 24826 0.10692566193552011 KYYKYILTR 9 Unmodified _KYYKYILTR_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000537634.1_1_12:6700611-6701611:-|nuORF ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MULTI-SECPEP UPN46_class_I_Rep_3 1 416.22821044921875 3 416.576408 1246.70739 0.020399 8.4978E-06 -0.15471 -6.4447E-05 -0.13431 -5.5949E-05 416.57637684767406 38.905 0.17204 38.905 38.856 39.028 0 28 19 2 0 0 0 0.1184 1 7464 7464 12.228 5.5972 1 148180 20608 1978 12675 12684 24827 24827 0.09390839845218579 KYYKYILTR 9 Unmodified _KYYKYILTR_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000537634.1_1_12:6700611-6701611:-|nuORF ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MULTI-SECPEP UPN46_class_I_Rep_3 1 416.2279968261719 3 416.576408 1246.70739 0.018033 7.5122E-06 0.10175 4.2388E-05 0.11979 4.99E-05 416.91081900171764 38.837 0.12696 38.837 38.751 38.878 0 18 12 2 0 0 0 0.12211 1 7420 7420 7.0371 2.6309 1 159980 20609 1978 12675 12684 24828 24828 0.09390839845218579 KYYNCYWV 8 Unmodified _KYYNCYWV_ 0 0 0 REV__L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|54|2|anti-sense REV__L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_3 4 569.7962646484375 2 569.754953 1137.49535 NaN NaN NaN NaN NaN NaN NaN 19.395 1 22.747 22.247 23.247 3.3514 0 0 0 0.40738 1 1804 1804 0.79363 0 1 + 20610 26833 12676 12685 24829 24829 -0.06789574837239343 KYYNQGLFK 9 Unmodified _KYYNQGLFK_ 0 0 0 REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 581.3099365234375 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.46869 1 8871 8871 3.9444 0 1 1057600 + 20611 19068 12677 12686 24830 24830 0.02917718368644273 KYYRFQHCI 9 Unmodified _KYYRFQHCI_ 0 0 0 REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|181|3|anti-sense REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|181|3|anti-sense MSMS UPN48_class_I_Rep_1 5 629.3140869140625 2 629.3135 1256.61245 NaN NaN NaN NaN NaN NaN NaN 61.541 1 65.008 64.508 65.508 3.4678 0 0 0 0.4007 1 13700 13700 0.52476 0 1 + 20612 17258 12678 12687 24831 24831 -0.005594168975903813 KYYWCIVY 8 Unmodified _KYYWCIVY_ 0 0 0 L1M4_dup7779|chr7:66707702-66708274:-|2.058670712701168|0.4672504468018712|2.14|151.0|31|2|anti-sense L1M4_dup7779|chr7:66707702-66708274:-|2.058670712701168|0.4672504468018712|2.14|151.0|31|2|anti-sense L1M4_dup7779|chr7:66707702-66708274:-|2.058670712701168|0.4672504468018712|2.14|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 569.275390625 2 569.275521 1136.53649 NaN NaN NaN NaN NaN NaN NaN 31.898 1 35.6 35.1 36.1 3.7015 0 0 0 0.40746 1 4781 4781 0.69038 0 1 20613 8908 12679 12688 24832 24832 -0.026318137977568767 KYYYNNNEK 9 Unmodified _KYYYNNNEK_ 0 0 0 Tigger1_dup10911|chr17:57298670-57299886:-|2.236484636227009|0.0174344482757077|7.0|151.0|53|1|anti-sense Tigger1_dup10911|chr17:57298670-57299886:-|2.236484636227009|0.0174344482757077|7.0|151.0|53|1|anti-sense Tigger1_dup10911|chr17:57298670-57299886:-|2.236484636227009|0.0174344482757077|7.0|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 618.2906494140625 2 618.288202 1234.56185 NaN NaN NaN NaN NaN NaN NaN 61.967 1 65.441 64.941 65.941 3.4738 0 0 0 0.39598 1 13808 13808 1.6526 0.17072 1 20614 33000 12680 12689 24833 24833 -0.046046677416370585 LAAAAAAAAGR 11 Unmodified _LAAAAAAAAGR_ 0 0 0 REV__nc|ENSG00000133124|O14654|IRS4 REV__nc|ENSG00000133124|O14654|IRS4 MULTI-MSMS UPN48_class_I_Rep_3 7 457.2641906738281 2 457.264333 912.514114 0.23289 0.00010649 -0.1778 -8.1302E-05 0.055086 2.5189E-05 457.26412247260816 72.237 1.4525 75.763 75.254 76.706 3.5266 245 134 3 0 0 0 0.64955 1 16859 16859 3.2813 0 1 287280 + 20615 19052 12681 12690 24834 24834 0.05435722848835667 LAAAARTTR 9 Unmodified _LAAAARTTR_ 0 0 0 REV__MSTA-int_dup1230|chr6:149360622-149362186:-|1.6842845194873242|0.0849039636008396|4.31|151.0|41|3|sense REV__MSTA-int_dup1230|chr6:149360622-149362186:-|1.6842845194873242|0.0849039636008396|4.31|151.0|41|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 465.7774353027344 2 465.777608 929.540663 0.0059894 2.7897E-06 -0.20331 -9.4697E-05 -0.19732 -9.1907E-05 465.7774230902794 73.041 1.6981 76.338 75.542 77.24 3.2971 202 148 2 0 0 0 0.48846 1 17997 17997 1.8442 0 1 165930 + 20616 31860 12682 12691 24835 24835 0.07307411740157477 LAAADPRR 8 Unmodified _LAAADPRR_ 0 0 0 ENST00000457543.3_1_7:6655412-6655763:+|nuORF ENST00000457543.3_1_7:6655412-6655763:+|nuORF ENST00000457543.3_1_7:6655412-6655763:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.251220703125 2 435.251226 868.487899 -0.4012 -0.00017462 -0.15926 -6.9317E-05 -0.56046 -0.00024394 435.25102546217005 71.164 1.8647 74.382 72.91 74.775 3.2188 221 159 2 0 0 0 0.82752 1 17414 17414 4.3292 0 1 332500 20617 6839 12683 12692 24836 24836 0.048394536773685104 LAAADPRR 8 Unmodified _LAAADPRR_ 0 0 0 ENST00000457543.3_1_7:6655412-6655763:+|nuORF ENST00000457543.3_1_7:6655412-6655763:+|nuORF ENST00000457543.3_1_7:6655412-6655763:+|nuORF MSMS UPN48_class_I_Rep_3 7 435.25091552734375 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 70.645 1 74.164 73.664 74.664 3.5185 0 0 0 0.40472 1 16357 16357 4.3292 0 1 20618 6839 12683 12692 24837 24837 0.048394536773685104 LAAAGRRGP 9 Unmodified _LAAAGRRGP_ 0 0 0 REV__ENSG00000170275|ENST00000320954|CRTAP REV__ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS UPN47_class_I_Rep_3 4 434.7591247558594 2 434.759218 867.503883 -0.38752 -0.00016848 0.21995 9.5627E-05 -0.16757 -7.2853E-05 434.7592732344153 78.651 0.87901 81.933 81.554 82.433 3.2816 204 89 3 0 0 0 0.46434 1 19580 19580 4.3292 0 1 630560 + 20619 20355 12684 12693 24838 24838 0.06483159914273529 LAAAGVARTQ 10 Unmodified _LAAAGVARTQ_ 0 0 0 THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|56|1|anti-sense;THE1B-int_dup2094|chr7:97891380-97892971:-|1.125512539975586|0.0424074938488867|4.73|149.0|75|2|anti-sense THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|56|1|anti-sense THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|56|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.27734375 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.56033 1 18568 18568 3.5965 3.5965 1 595600 20620 32904 12685 12694 24839 24839 0.06031992020314192 LAAAGVARTQ 10 Unmodified _LAAAGVARTQ_ 0 0 0 THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|56|1|anti-sense;THE1B-int_dup2094|chr7:97891380-97892971:-|1.125512539975586|0.0424074938488867|4.73|149.0|75|2|anti-sense THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|56|1|anti-sense THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|56|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.2773742675781 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.54822 1 18673 18673 5.7319 1.4026 1 542900 20621 32904 12685 12694 24840 24840 0.06031992020314192 LAAALPLSL 9 Unmodified _LAAALPLSL_ 0 0 0 MLT1C_dup16777|chr17:57540465-57540888:+|1.2111231161820986|0.0057276854971932|7.72|149.0|23|1|anti-sense MLT1C_dup16777|chr17:57540465-57540888:+|1.2111231161820986|0.0057276854971932|7.72|149.0|23|1|anti-sense MLT1C_dup16777|chr17:57540465-57540888:+|1.2111231161820986|0.0057276854971932|7.72|149.0|23|1|anti-sense MSMS UPN47_class_I_Rep_1 2 434.7798767089844 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 45.815 1 49.515 49.015 50.015 3.6999 0 0 0 0.39428 1 9659 9659 2.0598 0 1 20622 16304 12686 12695 24841 24841 0.10388447425293634 LAAALSPSSR 10 Unmodified _LAAALSPSSR_ 0 0 0 REV__L1PA4_dup829|chr2:138538748-138544882:-|3.0516079956799063|0.051907729169787|5.88|151.0|295|2|anti-sense REV__L1PA4_dup829|chr2:138538748-138544882:-|3.0516079956799063|0.051907729169787|5.88|151.0|295|2|anti-sense MSMS UPN46_class_I_Rep_3 1 486.77679443359375 2 486.777274 971.539994 NaN NaN NaN NaN NaN NaN NaN 35.588 1 35.588 35.088 36.088 0 0 0 0 0.53105 1 6497 6497 2.9952 0 1 + 20623 29679 12687 12696 24842 24842 0.053085723004642205 LAAARPRN 8 Unmodified _LAAARPRN_ 0 0 0 REV__nc|nan|Q2M2W7-2|C17orf58 REV__nc|nan|Q2M2W7-2|C17orf58 MULTI-MSMS UPN47_class_I_Rep_2 3 434.7591247558594 2 434.759218 867.503883 -0.32755 -0.00014241 0.15386 6.6891E-05 -0.17369 -7.5515E-05 434.75924157931956 78.604 0.81432 81.947 81.587 82.401 3.3428 185 87 3 0 0 0 0.82752 1 19549 19549 9.3474 0 1 535310 + 20624 20899 12688 12697 24843 24843 0.06483159914273529 LAAARPRN 8 Unmodified _LAAARPRN_ 0 0 0 REV__nc|nan|Q2M2W7-2|C17orf58 REV__nc|nan|Q2M2W7-2|C17orf58 MULTI-MSMS UPN48_class_I_Rep_1 5 434.7591857910156 2 434.759218 867.503883 -0.028552 -1.2413E-05 -0.2076 -9.0255E-05 -0.23615 -0.00010267 434.759106550754 78.357 0.78268 81.879 81.527 82.309 3.5221 187 97 3 0 0 0 0.82752 1 18709 18709 9.3474 0 1 561780 + 20625 20899 12688 12697 24844 24844 0.06483159914273529 LAAARPRN 8 Unmodified _LAAARPRN_ 0 0 0 REV__nc|nan|Q2M2W7-2|C17orf58 REV__nc|nan|Q2M2W7-2|C17orf58 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 434.759218 867.503883 -0.38752 -0.00016848 0.21995 9.5627E-05 -0.16757 -7.2853E-05 434.7592732344153 78.651 0.87901 81.933 81.554 82.433 3.2816 -0.076383 0.00014063 NaN 9.3474 204 89 3 NaN NaN NaN NaN 0 NaN NaN 0 630560 + 20626 20899 12688 12697 0.06483159914273529 LAAARPRN 8 Unmodified _LAAARPRN_ 0 0 0 REV__nc|nan|Q2M2W7-2|C17orf58 REV__nc|nan|Q2M2W7-2|C17orf58 MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.759218 867.503883 0.096244 4.1843E-05 0.59608 0.00025915 0.69232 0.00030099 434.75928304301476 78.655 0.074295 82.277 82.246 82.32 3.6222 0.2682 0.00046768 NaN 9.3474 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 55912 + 20627 20899 12688 12697 0.06483159914273529 LAAAVNRH 8 Unmodified _LAAAVNRH_ 0 0 0 REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 426.2460021972656 2 426.245944 850.477334 0.077215 3.2912E-05 -0.0011648 -4.9647E-07 0.07605 3.2416E-05 426.24592223851135 78.227 0.77901 81.85 81.533 82.312 3.6222 216 91 3 0 0 0 0.82752 1 18598 18598 2.5775 0 1 799010 + 20628 22312 12689 12698 24845 24845 0.0461147102294035 LAAAVPTAP 9 Unmodified _LAAAVPTAP_ 0 0 0 ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3 ENST00000530694.5_1_11:12023362-12031257:-|nuORF ENST00000530694.5_1_11:12023362-12031257:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 405.7392883300781 2 405.739628 809.464704 -0.065275 -2.6485E-05 0.41609 0.00016882 0.35081 0.00014234 405.7395591582333 55.247 0.60782 58.725 58.376 58.983 3.4785 48 35 2 0 0 0 0.15878 3 12466 12466;12514;12535 24.674 0 1 94456 20629 910 12690 12699 24846;24847;24848 24846 0.05235014840036456 LAAAVPTAP 9 Unmodified _LAAAVPTAP_ 0 0 0 ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3 ENST00000530694.5_1_11:12023362-12031257:-|nuORF ENST00000530694.5_1_11:12023362-12031257:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 405.7393798828125 2 405.739628 809.464704 -0.52959 -0.00021487 0.76638 0.00031095 0.23679 9.6077E-05 405.73975897582545 55.394 0.62376 58.705 58.476 59.1 3.3102 55 34 2 0 0 0 0.15878 2 12601 12601;12657 24.674 0 1 59485 20630 910 12690 12699 24849;24850 24849 0.05235014840036456 LAAAVPTAP 9 Unmodified _LAAAVPTAP_ 0 0 0 ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3 ENST00000530694.5_1_11:12023362-12031257:-|nuORF ENST00000530694.5_1_11:12023362-12031257:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 405.7393798828125 2 405.739628 809.464704 -0.69525 -0.00028209 1.0146 0.00041168 0.31938 0.00012959 405.7398021352278 55.565 0.60188 58.743 58.414 59.016 3.1779 62 36 2 0 0 0 0.15878 4 12702 12637;12661;12702;12745 24.674 0 1 76688 20631 910 12690 12699 24851;24852;24853;24854 24853 0.05235014840036456 LAAERTPLI 9 Unmodified _LAAERTPLI_ 0 0 0 REV__ENST00000464663.1_1_X:48753741-48755032:-|nuORF REV__ENST00000464663.1_1_X:48753741-48755032:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 491.7960205078125 2 492.297842 982.581131 0.34144 0.00016809 0.25924 0.00012762 0.60068 0.00029571 492.2982102572678 53.6 0.26957 57.21 57.062 57.331 3.6098 22 18 2 0 0 0 0.12157 1 11251 11251 6.2058 0 1 89842 + 20632 22459 12691 12700 24855 24855 0.08914333339953373 LAAERTPLI 9 Unmodified _LAAERTPLI_ 0 0 0 REV__ENST00000464663.1_1_X:48753741-48755032:-|nuORF REV__ENST00000464663.1_1_X:48753741-48755032:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 492.297842 982.581131 0.19131 9.418E-05 0.99315 0.00048892 1.1845 0.0005831 492.2986959943716 53.826 0.19572 57.34 57.259 57.455 3.5143 0.065131 0.00035896 NaN 6.2058 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 89015 + 20633 22459 12691 12700 0.08914333339953373 LAAFKVFF 8 Unmodified _LAAFKVFF_ 0 0 0 L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|44|1|anti-sense;L1M4c_dup1443|chr7:99020488-99022081:+|2.87939544213297|0.1140937209118722|4.66|151.0|80|2|anti-sense L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|44|1|anti-sense L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7770690917969 2 471.776014 941.537475 NaN NaN NaN NaN NaN NaN NaN 23.743 1 27.209 26.709 27.709 3.4655 0 0 0 0.40625 1 3037 3037 2.3027 0 1 20634 9041 12692 12701 24856 24856 0.06436768633477641 LAAFLSPVP 9 Unmodified _LAAFLSPVP_ 0 0 0 LTR83_dup499|chr11:48087842-48088549:-|1.6634001843570188|0.0171275429532497|6.6|150.0|26|1|anti-sense LTR83_dup499|chr11:48087842-48088549:-|1.6634001843570188|0.0171275429532497|6.6|150.0|26|1|anti-sense LTR83_dup499|chr11:48087842-48088549:-|1.6634001843570188|0.0171275429532497|6.6|150.0|26|1|anti-sense MSMS UPN47_class_I_Rep_3 4 457.756103515625 2 457.770929 913.527304 NaN NaN NaN NaN NaN NaN NaN 25.044 1 28.395 27.895 28.895 3.3509 0 0 0 0.3264 1 3457 3457 9.3474 0.75416 1 20635 15716 12693 12702 24857 24857 0.06708160908237915 LAAHCNLHL 9 Unmodified _LAAHCNLHL_ 0 0 0 AluSq_dup11578|chr11:68768396-68768705:-|1.0228476594710667|0.0766964105505079|3.74|151.0|24|3|anti-sense AluSq_dup11578|chr11:68768396-68768705:-|1.0228476594710667|0.0766964105505079|3.74|151.0|24|3|anti-sense AluSq_dup11578|chr11:68768396-68768705:-|1.0228476594710667|0.0766964105505079|3.74|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_1 2 496.2596435546875 2 496.260736 990.50692 NaN NaN NaN NaN NaN NaN NaN 35.054 1 38.74 38.24 39.24 3.6859 0 0 0 0.39428 1 6384 6384 2.0598 0.40713 1 20636 239 12694 12703 24858 24858 0.011286669767628155 LAAHHKTT 8 Unmodified _LAAHHKTT_ 0 0 0 REV__L1ME4b_dup15679|chr13:19974111-19974478:-|1.2996992197713826|0.0034198131978591|8.57|151.0|11|3|sense REV__L1ME4b_dup15679|chr13:19974111-19974478:-|1.2996992197713826|0.0034198131978591|8.57|151.0|11|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 439.8861389160156 2 439.745776 877.477 -0.42185 -0.00018551 -1.2442 -0.00054712 -1.666 -0.00073263 439.74521592954386 26.327 0.29116 30.089 29.876 30.167 3.7624 36 25 2 0 0 0 0.72333 1 3715 3715 0.79363 0 1 54480 + 20637 28260 12695 12704 24859 24859 0.03336051303074328 LAAILASASAL 11 Unmodified _LAAILASASAL_ 0 0 0 HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|255|1|anti-sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|255|1|anti-sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|255|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.3053894042969 2 500.8055 999.596446 0.12634 6.327E-05 -0.24531 -0.00012285 -0.11898 -5.9583E-05 500.8052688503073 54.237 0.6973 57.739 57.273 57.97 3.5014 62 34 2 0 0 0 0.65271 1 12255 12255 2.9952 0 1 85683 20638 8074 12696 12705 24860 24860 0.09663200137117656 LAALGFYT 8 Unmodified _LAALGFYT_ 0 0 0 ENSG00000180423|ENST00000326737|HARBI1 ENSG00000180423|ENST00000326737|HARBI1 ENSG00000180423|ENST00000326737|HARBI1 MULTI-MSMS UPN47_class_I_Rep_2 3 430.2559509277344 2 428.234179 854.453805 -0.26651 -0.00011413 0.89418 0.00038292 0.62767 0.00026879 428.23198298090307 109.23 0.6197 112.76 112.63 113.25 3.5307 178 83 5 0 0 0 0.82752 1 26667 26667 2.5775 0 1 6538100 20639 4889 12697 12706 24861 24861 0.02075612465762333 LAALHRQVPD 10 Unmodified _LAALHRQVPD_ 0 0 0 ENSG00000144815|ENST00000273347|NXPE3 ENSG00000144815|ENST00000273347|NXPE3 ENSG00000144815|ENST00000273347|NXPE3 MULTI-MSMS UPN47_class_I_Rep_1 2 560.3175659179688 2 560.317097 1118.61964 -0.00013252 -7.4254E-08 0.19871 0.00011134 0.19858 0.00011127 560.3171409786208 41.161 0.54937 44.833 44.694 45.243 3.6719 52 40 2 0 0 0 0.56033 1 8248 8248 3.5965 0.31518 1 118290 20640 3374 12698 12707 24862 24862 0.06507638974449037 LAALLRPLLLL 11 Unmodified _LAALLRPLLLL_ 0 0 0 REV__ENSG00000182324.7,KCNJ14,chr19,+,I2.1,48462439,48464180|23|7.26|1|intron REV__ENSG00000182324.7,KCNJ14,chr19,+,I2.1,48462439,48464180|23|7.26|1|intron MSMS UPN47_class_I_Rep_1 2 603.4190063476562 2 603.420834 1204.82712 NaN NaN NaN NaN NaN NaN NaN 108.11 1 111.74 111.24 112.24 3.6355 0 0 0 0.38417 1 26527 26527 0.35063 0 1 + 20641 20755 12699 12708 24863 24863 0.23289453189795495 LAALRSVQEV 10 Unmodified _LAALRSVQEV_ 0 0 0 REV__ENST00000568164.1_1_16:75148885-75149486:-|nuORF REV__ENST00000568164.1_1_16:75148885-75149486:-|nuORF MSMS UPN47_class_I_Rep_2 3 543.3195190429688 2 543.319306 1084.62406 NaN NaN NaN NaN NaN NaN NaN 35.051 1 38.476 37.976 38.976 3.4253 0 0 0 0.53105 1 6414 6414 4.5289 1.5336 1 + 20642 20190 12700 12709 24864 24864 0.08513103397376653 LAAPAAPASPP 11 Unmodified _LAAPAAPASPP_ 0 0 0 ENSG00000203883|ENST00000340356|SOX18 ENSG00000203883|ENST00000340356|SOX18 ENSG00000203883|ENST00000340356|SOX18 MSMS UPN47_class_I_Rep_3 4 481.7690124511719 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 30.103 1 33.414 32.914 33.914 3.3116 0 0 0 0.38417 1 4951 4951 3.2813 0.39209 1 20643 5497 12701 12710 24865 24865 0.04098071414500737 LAAPEAMARA 10 Unmodified _LAAPEAMARA_ 0 0 0 THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|83|3|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|83|3|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|83|3|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7661437988281 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 32.011 1 35.724 35.224 36.224 3.7131 0 0 0 0.53105 1 5452 5452 1.3295 0.5359 1 20644 32907 12702 12711 24866 24866 0.01737229911339 LAAPEYGQPAL 11 Unmodified _LAAPEYGQPAL_ 0 0 0 REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|184|3|anti-sense REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|184|3|anti-sense MSMS UPN48_class_I_Rep_2 6 565.2991943359375 2 565.298039 1128.58152 NaN NaN NaN NaN NaN NaN NaN 108.72 1 112.39 111.89 112.89 3.6746 0 0 0 0.38417 1 25809 25809 5.7319 1.4026 1 + 20645 29142 12703 12712 24867 24867 0.02237708269126415 LAAPLRHAER 10 Unmodified _LAAPLRHAER_ 0 0 0 ENSG00000150471|ENST00000683033|ADGRL3 ENSG00000150471|ENST00000683033|ADGRL3 ENSG00000150471|ENST00000683033|ADGRL3 MULTI-MSMS UPN46_class_I_Rep_3 1 567.3303833007812 2 567.330539 1132.64652 0.46311 0.00026274 -0.8746 -0.00049619 -0.41149 -0.00023345 567.3299092835357 87.339 0.47678 87.339 87.216 87.693 0 74 41 2 0 0 0 0.54822 1 20917 20917 5.7319 5.7319 1 2104900 20646 3564 12704 12713 24868 24868 0.08550747585650242 LAAPLRHAER 10 Unmodified _LAAPLRHAER_ 0 0 0 ENSG00000150471|ENST00000683033|ADGRL3 ENSG00000150471|ENST00000683033|ADGRL3 ENSG00000150471|ENST00000683033|ADGRL3 MULTI-MSMS UPN46_class_I_Rep_3 1 567.3298950195312 2 567.330539 1132.64652 0.4631 0.00026273 -0.9608 -0.00054509 -0.4977 -0.00028236 567.3298230425725 88.616 0.24247 88.616 88.566 88.808 0 44 28 2 0 0 0 0.56118 1 21284 21284 2.9952 0.26005 1 242550 20647 3564 12704 12713 24869 24869 0.08550747585650242 LAAPLRHAER 10 Unmodified _LAAPLRHAER_ 0 0 0 ENSG00000150471|ENST00000683033|ADGRL3 ENSG00000150471|ENST00000683033|ADGRL3 ENSG00000150471|ENST00000683033|ADGRL3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 567.330539 1132.64652 0.55195 0.00031314 -1.2403 -0.00070368 -0.68837 -0.00039054 567.3295611650733 85.407 0.12466 88.84 88.79 88.915 3.4329 0.11214 -0.00025408 NaN 2.9952 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 300600 20648 3564 12704 12713 0.08550747585650242 LAARRQLK 8 Unmodified _LAARRQLK_ 0 0 0 ENSG00000128271|ENST00000337539|ADORA2A ENSG00000128271|ENST00000337539|ADORA2A ENSG00000128271|ENST00000337539|ADORA2A MULTI-MSMS UPN47_class_I_Rep_1 2 478.3116760253906 2 478.311618 954.608683 0.24119 0.00011536 -0.5822 -0.00027847 -0.34101 -0.00016311 478.31137429636277 107.84 0.11411 111.51 111.46 111.58 3.6724 9 6 2 0 0 0 0.82752 1 26453 26453 14.582 5.2343 1 1217800 20649 2586 12705 12714 24870 24870 0.12956281390836466 LAARRQLK 8 Unmodified _LAARRQLK_ 0 0 0 ENSG00000128271|ENST00000337539|ADORA2A ENSG00000128271|ENST00000337539|ADORA2A ENSG00000128271|ENST00000337539|ADORA2A MULTI-MSMS UPN48_class_I_Rep_1 5 478.3118591308594 2 478.311618 954.608683 0.10867 5.1977E-05 -0.24204 -0.00011577 -0.13337 -6.3794E-05 478.3113972233347 107.85 0.14618 111.48 111.42 111.57 3.6313 16 10 2 0 0 0 0.82752 1 26038 26038 5.7604 0 1 2237500 20650 2586 12705 12714 24871 24871 0.12956281390836466 LAATNLSTL 9 Unmodified _LAATNLSTL_ 0 0 0 REV__ENST00000304863.5_1_19:29698987-29703814:-|nuORF REV__ENST00000304863.5_1_19:29698987-29703814:-|nuORF MSMS UPN46_class_I_Rep_3 1 452.26922607421875 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 35.873 1 35.873 35.373 36.373 0 0 0 0 0.38299 1 6583 6583 4.756 0 1 + 20651 21685 12706 12715 24872 24872 0.052143651776077604 LAAVLSAPLP 10 Unmodified _LAAVLSAPLP_ 0 0 0 nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89-3|DENND4C nc|ENSG00000137145|Q5VZ89-3|DENND4C MSMS UPN48_class_I_Rep_2 6 476.2978210449219 2 476.29731 950.580068 NaN NaN NaN NaN NaN NaN NaN 107.56 1 111.23 110.73 111.73 3.6783 0 0 0 0.53105 1 25422 25422 10.074 0.6908 1 20652 3009 12707 12716 24873 24873 0.10280118971036245 LAAVRRTN 8 Unmodified _LAAVRRTN_ 0 0 0 REV__ENSG00000133401|ENST00000438447|PDZD2 REV__ENSG00000133401|ENST00000438447|PDZD2 MSMS UPN46_class_I_Rep_3 1 450.7611083984375 2 450.772326 899.530098 NaN NaN NaN NaN NaN NaN NaN 35.912 1 35.912 35.412 36.412 0 0 0 0 0.39408 1 6595 6595 10.183 0 1 + 20653 19058 12708 12717 24874 24874 0.07631429085745367 LAAWTLVLS 9 Unmodified _LAAWTLVLS_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MULTI-MSMS UPN48_class_I_Rep_3 7 487.28955078125 2 487.289485 972.564418 0.15729 7.6646E-05 0.15739 7.6694E-05 0.31468 0.00015334 487.28942271584697 57.357 0.72713 60.888 60.521 61.249 3.5317 111 67 2 0 0 0 0.45688 1 12394 12394 4.756 0 1 285150 + 20654 20468 12709 12718 24875 24875 0.07703832454001258 LAAYTALKF 9 Unmodified _LAAYTALKF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60889559-60889904:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS UPN46_class_I_Rep_3 1 499.2906494140625 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 31.796 1 31.796 31.296 32.296 0 0 0 0 0.38299 1 5359 5359 4.756 0.42677 1 20655 2668 12710 12719 24876 24876 0.06599832453969157 LACYWFIEMLL 11 Unmodified _LACYWFIEMLL_ 0 0 0 L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|93|2|anti-sense L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|93|2|anti-sense L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|93|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 467.9029846191406 3 467.903027 1400.68725 0.1739 8.1366E-05 -0.06055 -2.8332E-05 0.11335 5.3035E-05 467.9030670800994 50.963 0.73513 50.963 50.738 51.473 0 125 78 2 0 0 0 0.62008 1 10803 10803 4.7159 0 1 298450 20656 8669 12711 12720 24877 24877 0.002935847987600937 LADAINTEF 9 Unmodified _LADAINTEF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_1 2 497.2481994628906 2 497.248015 992.481476 0.18946 9.421E-05 0.33737 0.00016775 0.52683 0.00026196 497.247976526935 59.276 0.74129 62.694 62.355 63.096 3.4171 93 51 2 0 0 0 0.081756 4 13769 13684;13769;13780;13830 38.176 11.463 1 279050 20657 824 12712 12721 24878;24879;24880;24881 24879 -0.015065290646703033 LADAINTEF 9 Unmodified _LADAINTEF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_2 3 497.24798583984375 2 497.248015 992.481476 0.30638 0.00015235 0.1039 5.1664E-05 0.41028 0.00020401 497.2478420593476 59.505 0.75151 62.778 62.409 63.161 3.2731 110 51 3 0 0 0 0.033731 5 13861 13776;13794;13819;13861;13902 55.503 11.644 1 294200 20658 824 12712 12721 24882;24883;24884;24885;24886 24885 -0.015065290646703033 LADAINTEF 9 Unmodified _LADAINTEF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_3 4 497.2480163574219 2 497.248015 992.481476 0.13545 6.735E-05 0.44717 0.00022236 0.58262 0.00028971 497.2479914977477 59.55 0.76231 62.715 62.427 63.19 3.1651 108 53 3 0 0 0 0.0058741 5 13919 13874;13880;13919;13960;14002 76.825 11.59 1 281450 20659 824 12712 12721 24887;24888;24889;24890;24891 24889 -0.015065290646703033 LADPENRQL 9 Unmodified _LADPENRQL_ 0 0 0 ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1 ENST00000519177.5_1_8:121583594-121823792:-|nuORF ENST00000519177.5_1_8:121583594-121823792:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 528.2772216796875 2 528.277638 1054.54072 0.19927 0.00010527 -0.1135 -5.9959E-05 0.085771 4.5311E-05 528.2775731867647 35.745 0.5162 35.745 35.455 35.971 0 54 34 2 0 0 0 0.33908 2 6537 6512;6537 11.495 2.7493 1 110420 20660 4563 12713 12722 24892;24893 24893 0.015633669495173308 LADPENRQL 9 Unmodified _LADPENRQL_ 0 0 0 ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1 ENST00000519177.5_1_8:121583594-121823792:-|nuORF ENST00000519177.5_1_8:121583594-121823792:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 528.277638 1054.54072 0.41264 0.00021799 3.4934 0.0018455 3.9061 0.0020635 528.7797549259648 31.707 0.071535 35.348 35.306 35.377 3.641 -0.1985 0.0037322 NaN 11.495 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 62091 20661 4563 12713 12722 0.015633669495173308 LADPVFRTL 9 Unmodified _LADPVFRTL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|2|intron ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN46_class_I_Rep_3 1 516.298095703125 2 516.297842 1030.58113 0.25714 0.00013276 -0.073005 -3.7693E-05 0.18413 9.5068E-05 516.297848454216 63.443 0.35735 63.443 63.316 63.673 0 65 42 2 0 0 0 0.10509 3 14252 14219;14252;14295 32.898 11.361 1 476130 20662 1994 12714 12723 24894;24895;24896 24895 0.06706333339957382 LADPVFRTL 9 Unmodified _LADPVFRTL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|2|intron ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-SECPEP UPN48_class_I_Rep_1 5 516.317626953125 2 516.297842 1030.58113 0.36241 0.00018711 0.21271 0.00010982 0.57513 0.00029694 516.2980832615848 57.839 0.26956 61.333 61.213 61.482 3.4942 28 18 2 0 0 0 0.10927 1 12548 12548 16.149 5.3252 1 108320 20663 1994 12714 12723 24897 24897 0.06706333339957382 LADPVFRTL 9 Unmodified _LADPVFRTL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|2|intron ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MSMS UPN48_class_I_Rep_3 7 516.298095703125 2 516.297842 1030.58113 0.2761 0.00014255 0.36972 0.00019088 0.64582 0.00033343 516.298223804336 57.571 0.52261 61.102 60.909 61.432 3.5317 67 40 2 0 0 0 0.31407 1 12377 12377 13.042 2.2185 1 119350 20664 1994 12714 12723 24898 24898 0.06706333339957382 LADPVFRTL 9 Unmodified _LADPVFRTL_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2;ENSG00000111913.20,RIPOR2,chr6,-,I30.1,24818626,24825225|32|15.2|2|intron ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 516.297842 1030.58113 0.2761 0.00014255 0.36972 0.00019088 0.64582 0.00033343 516.298223804336 57.571 0.52261 61.102 60.909 61.432 3.5317 -0.16395 5.0399E-05 NaN 16.149 67 40 2 NaN NaN NaN NaN 0 NaN NaN 0 119350 20665 1994 12714 12723 0.06706333339957382 LADSFPLRL 9 Unmodified _LADSFPLRL_ 0 0 0 MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|20|2|anti-sense MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|20|2|anti-sense MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|20|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.3156127929688 2 516.297842 1030.58113 0.2761 0.00014255 0.36972 0.00019088 0.64582 0.00033343 516.298223804336 57.571 0.52261 61.102 60.909 61.432 3.5317 67 40 2 0 0 0 0.37599 1 12408 12408 9.3831 0 1 119350 20666 16367 12715 12724 24899 24899 0.06706333339934645 LADTSWLH 8 Unmodified _LADTSWLH_ 0 0 0 L1MB4_dup1814|chr3:149926990-149927982:-|1.1245222748245978|0.1047415287519248|3.42|151.0|64|3|anti-sense L1MB4_dup1814|chr3:149926990-149927982:-|1.1245222748245978|0.1047415287519248|3.42|151.0|64|3|anti-sense L1MB4_dup1814|chr3:149926990-149927982:-|1.1245222748245978|0.1047415287519248|3.42|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 471.73773193359375 2 471.737617 941.460681 -0.17445 -8.2295E-05 -0.19204 -9.0592E-05 -0.36649 -0.00017289 471.7375092769376 45.205 0.66079 48.905 48.569 49.229 3.6999 51 38 2 0 0 0 0.82752 1 9404 9404 14.582 0 1 117080 20667 10483 12716 12725 24900 24900 -0.012390746536766528 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MSMS UPN47_class_I_Rep_1 2 436.7746887207031 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 83.092 1 86.631 86.131 87.131 3.5386 0 0 0 0.40604 1 20773 20773 2.5775 0 1 20668 2678 12717 12726 24901 24901 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MULTI-MSMS UPN47_class_I_Rep_3 4 436.77471923828125 2 436.776211 871.537869 -0.34557 -0.00015094 -2.557 -0.0011168 -2.9025 -0.0012678 436.7748880663534 86.068 0.058044 89.44 89.424 89.482 3.3716 6 4 2 0 0 0 0.82752 1 21577 21577 2.5775 0 1 323740 20669 2678 12717 12726 24902 24902 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MSMS UPN48_class_I_Rep_1 5 436.7747802734375 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 83.039 1 86.627 86.127 87.127 3.5871 0 0 0 0.40604 1 19849 19849 2.5775 0 1 20670 2678 12717 12726 24903 24903 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MSMS UPN48_class_I_Rep_1 5 436.7749328613281 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 83.917 1 87.514 87.014 88.014 3.5973 0 0 0 0.40604 1 20081 20081 2.5775 0 1 20671 2678 12717 12726 24904 24904 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MSMS UPN48_class_I_Rep_1 5 436.7747802734375 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 93.234 1 96.858 96.358 97.358 3.624 0 0 0 0.40604 1 22404 22404 2.5775 0 1 20672 2678 12717 12726 24905 24905 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MULTI-MATCH UPN46_class_I_Rep_3 1 2 436.776211 871.537869 0.151 6.5953E-05 -4.1359 -0.0018064 -3.9849 -0.0017405 436.7743361678924 89.646 0.044159 89.646 89.609 89.654 0 0.039946 -0.0004207 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 31941 20673 2678 12717 12726 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MULTI-MATCH UPN48_class_I_Rep_1 5 2 436.776211 871.537869 -0.035112 -1.5336E-05 -3.524 -0.0015392 -3.5591 -0.0015545 436.7745820114742 85.913 0.033905 89.519 89.504 89.538 3.6059 -0.086772 0.00011379 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 45776 20674 2678 12717 12726 0.0969614356264401 LADTVLKI 8 Unmodified _LADTVLKI_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593906.1_1_19:40698163-40710439:+|nuORF ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MULTI-MATCH UPN48_class_I_Rep_3 7 2 436.776211 871.537869 0.16248 7.0966E-05 -3.5713 -0.0015599 -3.4089 -0.0014889 436.77485563162185 86.048 0.055298 89.818 89.782 89.837 3.7701 0.21265 7.2429E-05 NaN 2.5775 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 35271 20675 2678 12717 12726 0.0969614356264401 LADWPLWY 8 Unmodified _LADWPLWY_ 0 0 0 ENSG00000107789|ENST00000371996|MINPP1;nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 MULTI-MSMS UPN47_class_I_Rep_3 4 532.2660522460938 2 532.26601 1062.51747 -0.26623 -0.0001417 -0.18497 -9.8453E-05 -0.45119 -0.00024016 532.265855453448 27.709 1.4394 31.051 30.577 32.016 3.3422 265 121 3 0 0 0 0.82752 7 4149 4149;4184;4225;4262;4301;4337;4381 32.117 32.117 1 299920 20676 1831 12718 12727 24906;24907;24908;24909;24910;24911;24912 24906 -0.01129027097135804 LAEGQLRL 8 Unmodified _LAEGQLRL_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.2686767578125 2 450.269084 898.523616 -0.3677 -0.00016556 -0.38513 -0.00017341 -0.75283 -0.00033898 450.2688336164344 45.574 0.63158 48.928 48.7 49.331 3.3535 49 39 2 0 0 0 0.82752 1 9635 9635 8.5933 0 1 67931 20677 3646 12719 12728 24913 24913 0.07029491134358068 LAELQSPVYD 10 Unmodified _LAELQSPVYD_ 0 0 0 REV__ENSG00000138002|ENST00000260570|IFT172 REV__ENSG00000138002|ENST00000260570|IFT172 MULTI-MSMS UPN47_class_I_Rep_3 4 567.7885131835938 2 567.787504 1133.56045 0.40061 0.00022746 0.066445 3.7726E-05 0.46706 0.00026519 567.7873450991292 56.23 0.77567 59.402 59.055 59.831 3.1721 125 49 4 0 0 0 0.55148 1 12844 12844 5.2969 0.39987 1 349230 + 20678 19257 12720 12729 24914 24914 -0.0009830183039412077 LAELVESGLVC 11 Unmodified _LAELVESGLVC_ 0 0 0 REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF MSMS UPN47_class_I_Rep_1 2 566.797607421875 2 566.799557 1131.58456 NaN NaN NaN NaN NaN NaN NaN 48.165 1 51.847 51.347 52.347 3.6819 0 0 0 0.38417 1 10366 10366 5.2969 1.7004 1 + 20679 20086 12721 12730 24915 24915 0.024032153316284166 LAEPAGLKQ 9 Unmodified _LAEPAGLKQ_ 0 0 0 REV__nc|ENSG00000015133|Q9P219-3|CCDC88C REV__nc|ENSG00000015133|Q9P219-3|CCDC88C MSMS UPN46_class_I_Rep_3 1 463.7682800292969 2 463.768917 925.523281 NaN NaN NaN NaN NaN NaN NaN 107.96 1 107.96 107.46 108.46 0 0 0 0 0.36505 1 26350 26350 7.2892 1.0834 1 + 20680 17593 12722 12731 24916 24916 0.05754071414514783 LAEPIKAPWK 10 Unmodified _LAEPIKAPWK_ 0 0 0 MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|69|2|sense MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|69|2|sense MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|69|2|sense MSMS UPN46_class_I_Rep_3 1 576.8439331054688 2 576.842416 1151.67028 NaN NaN NaN NaN NaN NaN NaN 108.53 1 108.53 108.03 109.03 0 0 0 0 0.53105 1 26549 26549 8.7454 2.0222 1 20681 16163 12723 12732 24917 24917 0.10051168299446545 LAEPILPYA 9 Unmodified _LAEPILPYA_ 0 0 0 ENSG00000133195|ENST00000255559|SLC39A11;nc|ENSG00000133195|Q8N1S5|SLC39A11;ENST00000579988.1_1_17:70643725-70721657:-|nuORF ENSG00000133195|ENST00000255559|SLC39A11 ENSG00000133195|ENST00000255559|SLC39A11 MSMS UPN48_class_I_Rep_3 7 493.7807922363281 2 493.781493 985.548434 NaN NaN NaN NaN NaN NaN NaN 77.331 1 80.932 80.432 81.432 3.6016 0 0 0 0.35339 1 18260 18260 7.9102 0 1 20682 2795 12724 12733 24918 24918 0.05508126217080189 LAEPNCVR 8 Unmodified _LAEPNCVR_ 0 0 0 ENST00000545991.1_1_12:132626651-132627411:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51 ENST00000545991.1_1_12:132626651-132627411:-|nuORF ENST00000545991.1_1_12:132626651-132627411:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 451.2301940917969 2 451.231645 900.448736 -0.16838 -7.5976E-05 -0.886 -0.00039979 -1.0544 -0.00047577 451.23050499577 100.2 0.16895 103.64 103.56 103.73 3.4483 25 21 2 0 0 0 0.82752 1 24755 24755 2.3027 0 1 62773 20683 5089 12725 12734 24919 24919 -0.005470146685070176 LAERGLKL 8 Unmodified _LAERGLKL_ 0 0 0 REV__ENST00000396326.2_1_10:30806804-30806981:-|nuORF REV__ENST00000396326.2_1_10:30806804-30806981:-|nuORF MSMS UPN47_class_I_Rep_2 3 450.286865234375 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 38.561 1 41.949 41.449 42.449 3.3879 0 0 0 0.3978 1 7480 7480 8.7454 0 1 + 20684 22121 12726 12735 24920 24920 0.10666368031081674 LAEWHLHLNRR 11 Unmodified _LAEWHLHLNRR_ 0 0 0 REV__ENST00000581181.5_1_18:14179393-14187439:+|nuORF REV__ENST00000581181.5_1_18:14179393-14187439:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 482.6031188964844 3 482.26886 1443.78475 -0.31312 -0.00015101 0.62621 0.000302 0.31308 0.00015099 482.269116928322 30.81 0.26261 34.555 34.481 34.743 3.7449 27 21 2 0 0 0 0.68024 1 5103 5103 0.50596 0 1 58148 + 20685 23127 12727 12736 24921 24921 0.08060870834106026 LAEWHLHLNRR 11 Unmodified _LAEWHLHLNRR_ 0 0 0 REV__ENST00000581181.5_1_18:14179393-14187439:+|nuORF REV__ENST00000581181.5_1_18:14179393-14187439:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.6034240722656 3 482.26886 1443.78475 -0.19996 -9.6434E-05 0.016095 7.7621E-06 -0.18386 -8.8672E-05 482.26884248206846 29.98 1.2706 33.473 33.04 34.31 3.4923 147 103 2 0 0 0 0.68024 1 4764 4764 0.50596 0.34663 1 120970 + 20686 23127 12727 12736 24922 24922 0.08060870834106026 LAFDSFVLPL 10 Unmodified _LAFDSFVLPL_ 0 0 0 HERVL-int_dup372|chr3:17590046-17590957:+|1.5651126074129669|0.0087119227563187|7.49|151.0|48|3|anti-sense HERVL-int_dup372|chr3:17590046-17590957:+|1.5651126074129669|0.0087119227563187|7.49|151.0|48|3|anti-sense HERVL-int_dup372|chr3:17590046-17590957:+|1.5651126074129669|0.0087119227563187|7.49|151.0|48|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.31591796875 2 561.3157 1120.61685 0.42467 0.00023837 -0.033415 -1.8756E-05 0.39126 0.00021962 561.3155774240071 95.02 0.52445 98.922 98.755 99.279 3.9016 81 68 2 0 0 0 0.33585 1 22546 22546 25.399 2.663 1 127010 20687 8369 12728 12737 24923 24923 0.06136370796957635 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN46_class_I_Rep_3 1 479.2578430175781 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 111.78 1 111.78 111.28 112.28 0 0 0 0 0.40738 1 27571 27571 0.79363 0 1 + 20688 31390 12729 12738 24924 24924 0.02076472016904063 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN47_class_I_Rep_3 4 479.25811767578125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 115.28 1 118.76 118.26 119.26 3.4802 0 0 0 0.40746 1 28341 28341 0.69038 0 1 + 20689 31390 12729 12738 24925 24925 0.02076472016904063 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.25823974609375 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 114.42 1 118.05 117.55 118.55 3.6301 0 0 0 0.40604 1 27817 27817 2.5775 0 1 + 20690 31390 12729 12738 24926 24926 0.02076472016904063 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.258056640625 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 115.93 1 119.56 119.06 120.06 3.6282 0 0 0 0.40746 1 28216 28216 0.69038 0 1 + 20691 31390 12729 12738 24927 24927 0.02076472016904063 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.25830078125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 114.68 1 118.34 117.84 118.84 3.6616 0 0 0 0.40738 1 27422 27422 0.79363 0 1 + 20692 31390 12729 12738 24928 24928 0.02076472016904063 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.2585144042969 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 116.32 1 119.98 119.48 120.48 3.6607 0 0 0 0.40738 1 27862 27862 0.79363 0 1 + 20693 31390 12729 12738 24929 24929 0.02076472016904063 LAFFFELA 8 Unmodified _LAFFFELA_ 0 0 0 REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense REV__MER51-int_dup488|chr17:20197213-20198119:-|1.3559724928599206|0.0080458274380863|7.4|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_3 7 479.2583312988281 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 111.41 1 115.07 114.57 115.57 3.6654 0 0 0 0.40738 1 26441 26441 0.79363 0 1 + 20694 31390 12729 12738 24930 24930 0.02076472016904063 LAFLWGFL 8 Unmodified _LAFLWGFL_ 0 0 0 REV__NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant REV__NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant MSMS UPN47_class_I_Rep_2 3 483.775634765625 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 56.062 1 59.363 58.863 59.863 3.3009 0 0 0 0.4032 1 12804 12804 6.3541 0 1 + 20695 17978 12730 12739 24931 24931 0.05332768633468277 LAFPLHFLY 9 Unmodified _LAFPLHFLY_ 0 0 0 L1MEf_dup7411|chr10:48917292-48918688:+|1.1975968689585268|0.0225173151896966|5.73|151.0|86|2|anti-sense L1MEf_dup7411|chr10:48917292-48918688:+|1.1975968689585268|0.0225173151896966|5.73|151.0|86|2|anti-sense L1MEf_dup7411|chr10:48917292-48918688:+|1.1975968689585268|0.0225173151896966|5.73|151.0|86|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.8148193359375 2 560.813128 1119.6117 NaN NaN NaN NaN NaN NaN NaN 71.104 1 74.57 74.07 75.07 3.466 0 0 0 0.39326 1 16602 16602 2.3027 0 1 20696 13318 12731 12740 24932 24932 0.056681117249809176 LAFSALVFRLG 11 Unmodified _LAFSALVFRLG_ 0 0 0 REV__ENSG00000090971|ENST00000205194|NAT14 REV__ENSG00000090971|ENST00000205194|NAT14 MSMS UPN46_class_I_Rep_3 1 597.3569946289062 2 597.355691 1192.69683 NaN NaN NaN NaN NaN NaN NaN 88.653 1 88.653 88.153 89.153 0 0 0 0 0.38417 1 21301 21301 2.7352 0.89096 1 + 20697 18013 12732 12741 24933 24933 0.10818857190793096 LAFSRALEL 9 Unmodified _LAFSRALEL_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MSMS UPN48_class_I_Rep_3 7 510.2988586425781 2 510.297842 1018.58113 NaN NaN NaN NaN NaN NaN NaN 63.074 1 66.583 66.083 67.083 3.5091 0 0 0 0.098423 1 14072 14072 24.991 3.2443 1 20698 5451 12733 12742 24934 24934 0.07258333339939327 LAFVAIWF 8 Unmodified _LAFVAIWF_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|186|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|186|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|186|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.77630615234375 2 483.776014 965.537475 0.10132 4.9014E-05 -0.87814 -0.00042482 -0.77683 -0.00037581 483.77568196958634 55.803 0.41344 59.281 59.003 59.416 3.4785 36 25 2 0 0 0 0.82752 1 12660 12660 6.3541 0 1 62567 20699 14446 12734 12743 24935 24935 0.05332768633456908 LAFVAIWF 8 Unmodified _LAFVAIWF_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|186|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|186|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|186|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 483.64630126953125 2 483.776014 965.537475 0.10132 4.9014E-05 -0.87814 -0.00042482 -0.77683 -0.00037581 483.77568196958634 55.803 0.41344 59.281 59.003 59.416 3.4785 36 25 2 0 0 0 0.72333 1 12730 12730 6.3541 0 1 62567 20700 14446 12734 12743 24936 24936 0.05332768633456908 LAFVPGIAL 9 Unmodified _LAFVPGIAL_ 0 0 0 ENST00000257013.8_1_X:134166773-134167211:+|nuORF ENST00000257013.8_1_X:134166773-134167211:+|nuORF ENST00000257013.8_1_X:134166773-134167211:+|nuORF MSMS UPN47_class_I_Rep_2 3 450.781982421875 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.228 1 95.693 95.193 96.193 3.4652 0 0 0 0.22893 1 22807 22807 14.582 0 1 20701 5932 12735 12744 24937 24937 0.09424751287883737 LAFVPGIAL 9 Unmodified _LAFVPGIAL_ 0 0 0 ENST00000257013.8_1_X:134166773-134167211:+|nuORF ENST00000257013.8_1_X:134166773-134167211:+|nuORF ENST00000257013.8_1_X:134166773-134167211:+|nuORF MSMS UPN47_class_I_Rep_2 3 450.7813415527344 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.769 1 96.234 95.734 96.734 3.4652 0 0 0 0.051022 1 22920 22920 36.466 0 1 20702 5932 12735 12744 24938 24938 0.09424751287883737 LAFVPGIAL 9 Unmodified _LAFVPGIAL_ 0 0 0 ENST00000257013.8_1_X:134166773-134167211:+|nuORF ENST00000257013.8_1_X:134166773-134167211:+|nuORF ENST00000257013.8_1_X:134166773-134167211:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.7813720703125 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 92.948 1 96.353 95.853 96.853 3.4052 0 0 0 0.12887 1 23190 23190 20.871 0 1 20703 5932 12735 12744 24939 24939 0.09424751287883737 LAFYFLHN 8 Unmodified _LAFYFLHN_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|294|1|anti-sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|294|1|anti-sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|294|1|anti-sense MSMS UPN48_class_I_Rep_2 6 512.7652587890625 2 512.766178 1023.5178 NaN NaN NaN NaN NaN NaN NaN 83.02 1 86.702 86.202 87.202 3.6814 0 0 0 0.40604 1 19723 19723 2.5775 0 1 20704 9651 12736 12745 24940 24940 0.006983926227007942 LAFYRLHRR 9 Unmodified _LAFYRLHRR_ 0 0 0 nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT;ENSG00000070748|ENST00000337653|CHAT nc|ENSG00000070748|P28329-3|CHAT nc|ENSG00000070748|P28329-3|CHAT MULTI-MSMS UPN48_class_I_Rep_1 5 411.2434997558594 3 411.243874 1230.70979 -0.14171 -5.8277E-05 -0.5793 -0.00023824 -0.72101 -0.00029651 411.2435943260125 91.379 0.53224 95.005 94.762 95.294 3.626 118 79 2 0 0 0 0.48007 1 21916 21916 2.7352 2.7352 1 5601300 20705 1077 12737 12746 24941 24941 0.10366733093519542 LAGDRTGSGR 10 Unmodified _LAGDRTGSGR_ 0 0 0 ENST00000409780.5_1_2:112656225-112702538:+|nuORF ENST00000409780.5_1_2:112656225-112702538:+|nuORF ENST00000409780.5_1_2:112656225-112702538:+|nuORF MSMS UPN48_class_I_Rep_1 5 495.26312255859375 2 495.259779 988.505006 NaN NaN NaN NaN NaN NaN NaN 100.86 1 104.47 103.97 104.97 3.6084 0 0 0 0.53105 1 24353 24353 1.1933 0 1 20706 6626 12738 12747 24942 24942 0.010293294925304508 LAGHHIKG 8 Unmodified _LAGHHIKG_ 0 0 0 nc|ENSG00000188523|Q6ZQR2|CFAP77 nc|ENSG00000188523|Q6ZQR2|CFAP77 nc|ENSG00000188523|Q6ZQR2|CFAP77 MSMS UPN47_class_I_Rep_2 3 416.75628662109375 2 416.743037 831.471521 NaN NaN NaN NaN NaN NaN NaN 109.13 1 112.66 112.16 113.16 3.5307 0 0 0 0.40738 1 26568 26568 0.79363 0 1 20707 16785 12739 12748 24943 24943 0.04904372511282418 LAGLLTSPSI 10 Unmodified _LAGLLTSPSI_ 0 0 0 L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|44|1|anti-sense L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|44|1|anti-sense L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_2 3 486.29193115234375 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 76.746 1 80.078 79.578 80.578 3.3315 0 0 0 0.53105 1 19007 19007 9.3831 0.63772 1 20708 8910 12740 12749 24944 24944 0.08343511245811897 LAGPKGER 8 Unmodified _LAGPKGER_ 0 0 0 ENSG00000133661|ENST00000372292|SFTPD ENSG00000133661|ENST00000372292|SFTPD ENSG00000133661|ENST00000372292|SFTPD MULTI-MSMS UPN46_class_I_Rep_3 1 414.2400817871094 2 414.240327 826.466101 -0.15445 -6.3981E-05 0.067959 2.8151E-05 -0.086495 -3.583E-05 414.24027541763553 31.33 1.0405 31.33 30.943 31.984 0 158 77 3 0 0 0 0.82752 2 5171 5171;5224 30.637 0 1 392940 20709 2810 12741 12750 24945;24946 24945 0.045926489288035555 LAGSVGNVLL 10 Unmodified _LAGSVGNVLL_ 0 0 0 ENST00000354370.5_2_8:76456102-76459880:+|nuORF ENST00000354370.5_2_8:76456102-76459880:+|nuORF ENST00000354370.5_2_8:76456102-76459880:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.2945251464844 2 471.784567 941.554582 -0.015093 -7.1208E-06 0.27201 0.00012833 0.25692 0.00012121 471.7847589763007 50.777 0.37624 54.405 54.233 54.609 3.6285 22 16 2 0 0 0 0.46161 1 11209 11209 14.838 0 1 48101 20710 6277 12742 12751 24947 24947 0.08146644448629559 LAGSVGNVLL 10 Unmodified _LAGSVGNVLL_ 0 0 0 ENST00000354370.5_2_8:76456102-76459880:+|nuORF ENST00000354370.5_2_8:76456102-76459880:+|nuORF ENST00000354370.5_2_8:76456102-76459880:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.2945861816406 2 471.784567 941.554582 0.12486 5.8908E-05 -0.12339 -5.8216E-05 0.001467 6.9209E-07 471.7845911733963 51.128 0.30083 54.467 54.316 54.617 3.3386 24 15 2 0 0 0 0.47413 1 11313 11313 13.906 3.8321 1 48261 20711 6277 12742 12751 24948 24948 0.08146644448629559 LAGVARFHV 9 Unmodified _LAGVARFHV_ 0 0 0 REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|30|3|sense REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 485.2860107421875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 42.618 1 46.376 45.876 46.876 3.7579 0 0 0 0.39428 1 7911 7911 2.0598 0 1 + 20712 30824 12743 12752 24949 24949 0.07004903608174118 LAGVARFHV 9 Unmodified _LAGVARFHV_ 0 0 0 REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|30|3|sense REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 485.2853698730469 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.809 1 58.391 57.891 58.891 3.5817 0 0 0 0.39428 1 11621 11621 2.0598 0 1 + 20713 30824 12743 12752 24950 24950 0.07004903608174118 LAGVARFHV 9 Unmodified _LAGVARFHV_ 0 0 0 REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|30|3|sense REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 485.2859191894531 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 57.779 1 61.293 60.793 61.793 3.5142 0 0 0 0.39428 1 12525 12525 2.0598 0 1 + 20714 30824 12743 12752 24951 24951 0.07004903608174118 LAGVEICLEI 10 Unmodified _LAGVEICLEI_ 0 0 0 ENST00000527217.1_1_11:93343186-93343498:-|nuORF ENST00000527217.1_1_11:93343186-93343498:-|nuORF ENST00000527217.1_1_11:93343186-93343498:-|nuORF MSMS UPN46_class_I_Rep_3 1 530.2894897460938 2 530.291368 1058.56818 NaN NaN NaN NaN NaN NaN NaN 29.666 1 29.666 29.166 30.166 0 0 0 0 0.53105 1 4729 4729 3.9444 0 1 20715 7267 12744 12753 24952 24952 0.04124134165522264 LAGYNGKETY 10 Unmodified _LAGYNGKETY_ 0 0 0 REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|330|3|anti-sense REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|330|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2713623046875 2 558.272021 1114.52949 0.51797 0.00028917 -0.5057 -0.00028232 0.012272 6.8511E-06 558.2716435892389 55.469 0.66879 58.78 58.51 59.179 3.3102 66 37 2 0 0 0 0.56118 1 12600 12600 2.9952 0 1 106710 + 20716 23903 12745 12754 24953 24953 -0.023194551446067635 LAGYNGKETY 10 Unmodified _LAGYNGKETY_ 0 0 0 REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|330|3|anti-sense REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|330|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2723999023438 2 558.272021 1114.52949 0.4168 0.00023269 -0.48238 -0.0002693 -0.065582 -3.6612E-05 558.2717400735921 55.662 0.72366 58.839 58.491 59.215 3.1779 69 45 2 0 0 0 0.56118 1 12727 12727 2.9952 0 1 102570 + 20717 23903 12745 12754 24954 24954 -0.023194551446067635 LAHAGVQWHD 10 Unmodified _LAHAGVQWHD_ 0 0 0 AluSz_dup96986|chr19:57299211-57299513:-|1.328567923349742|0.3288295497170118|2.01|151.0|19|3|anti-sense AluSz_dup96986|chr19:57299211-57299513:-|1.328567923349742|0.3288295497170118|2.01|151.0|19|3|anti-sense AluSz_dup96986|chr19:57299211-57299513:-|1.328567923349742|0.3288295497170118|2.01|151.0|19|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.2774658203125 2 567.277972 1132.54139 0.33362 0.00018925 -0.86017 -0.00048796 -0.52656 -0.0002987 567.2774053342404 55.327 0.78472 58.806 58.284 59.069 3.4785 74 49 2 0 0 0 0.56333 1 12513 12513 1.4819 0 1 133450 20718 374 12746 12755 24955 24955 -0.01957793610790759 LAHAPSSGKI 10 Unmodified _LAHAPSSGKI_ 0 0 0 REV__THE1B_dup15979|chr11:76076224-76076595:-|1.0811025597938448|0.0094153629838007|6.84|151.0|8|2|sense REV__THE1B_dup15979|chr11:76076224-76076595:-|1.0811025597938448|0.0094153629838007|6.84|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 490.7819519042969 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 26.778 1 30.121 29.621 30.621 3.3422 0 0 0 0.53105 1 3969 3969 1.6526 0 1 + 20719 32228 12747 12756 24956 24956 0.054488761630864246 LAHAYILNGF 10 Unmodified _LAHAYILNGF_ 0 0 0 L1PA6_dup1497|chr4:67440052-67442046:+|1.8566176616855383|0.3830494445611597|2.28|151.0|66|1|anti-sense L1PA6_dup1497|chr4:67440052-67442046:+|1.8566176616855383|0.3830494445611597|2.28|151.0|66|1|anti-sense L1PA6_dup1497|chr4:67440052-67442046:+|1.8566176616855383|0.3830494445611597|2.28|151.0|66|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.802734375 2 559.803291 1117.59203 0.50615 0.00028334 -0.73863 -0.00041349 -0.23248 -0.00013014 559.8027255677746 69.067 0.71287 72.522 72.072 72.785 3.4548 90 54 2 0 0 0 0.50391 1 16044 16044 11.64 11.64 1 178640 20720 14561 12748 12757 24957 24957 0.03793735714225477 LAHFAKSIS 9 Unmodified _LAHFAKSIS_ 0 0 0 ENSG00000176731|ENST00000619594|RBIS ENSG00000176731|ENST00000619594|RBIS ENSG00000176731|ENST00000619594|RBIS MSMS UPN48_class_I_Rep_1 5 487.2894287109375 2 487.276909 972.539266 NaN NaN NaN NaN NaN NaN NaN 57.261 1 60.755 60.255 61.255 3.4942 0 0 0 0.381 1 12392 12392 5.2307 0 1 20721 4769 12749 12758 24958 24958 0.0518977765142381 LAHFDVSL 8 Unmodified _LAHFDVSL_ 0 0 0 REV__ENSG00000108506|ENST00000251334|INTS2 REV__ENSG00000108506|ENST00000251334|INTS2 MULTI-MSMS UPN47_class_I_Rep_2 3 451.2419738769531 2 451.242535 900.470518 -0.54669 -0.00024669 0.019292 8.7053E-06 -0.5274 -0.00023798 451.24249865937685 40 0.62627 43.371 43.157 43.783 3.3712 56 42 2 0 0 0 0.82752 1 7948 7948 5.2307 0 1 69515 + 20722 18382 12750 12759 24959 24959 0.016301133517231392 LAHKGISQAA 10 Unmodified _LAHKGISQAA_ 0 0 0 ENST00000462934.5_1_7:6449470-6461666:-|nuORF;ENSG00000164535.15,DAGLB,chr7,-,I7.1,6432960,6434761|65|13.77|4|intron;ENST00000454738.5_1_7:6456256-6487444:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB;nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-4|DAGLB ENST00000462934.5_1_7:6449470-6461666:-|nuORF MSMS UPN48_class_I_Rep_3 7 498.2852783203125 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 21.212 1 24.879 24.379 25.379 3.6667 0 0 0 0.53105 1 1952 1952 1.1933 0.39971 1 20723 6873;4116 12751 12760 24960 24960 0.05848278537382612 LAIEIKVGNNF 11 Unmodified _LAIEIKVGNNF_ 0 0 0 HAL1_dup13855|chrX:111702307-111703185:-|3.897904002713612|0.2467380886023455|3.98|151.0|58|3|anti-sense HAL1_dup13855|chrX:111702307-111703185:-|3.897904002713612|0.2467380886023455|3.98|151.0|58|3|anti-sense HAL1_dup13855|chrX:111702307-111703185:-|3.897904002713612|0.2467380886023455|3.98|151.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 405.9326477050781 3 406.567801 1216.68157 0.064171 2.609E-05 -2.9668 -0.0012062 -2.9026 -0.0011801 406.56666487414776 34.786 0.14302 38.46 38.411 38.554 3.6735 16 11 2 0 0 0 22.551 1 5657 5657 4.1166 1.3814 1 76399 20724 7800 12752 12761 24961 24961 0.0818994560295323 LAIFTAALTA 10 Unmodified _LAIFTAALTA_ 0 0 0 ENSG00000136834|ENST00000259357|OR1J1 ENSG00000136834|ENST00000259357|OR1J1 ENSG00000136834|ENST00000259357|OR1J1 MULTI-MSMS UPN47_class_I_Rep_1 2 496.29486083984375 2 496.294768 990.574983 0.13164 6.5333E-05 -0.33253 -0.00016503 -0.20089 -9.9701E-05 496.294735634463 55.889 0.76733 59.367 59.029 59.796 3.4785 115 44 3 0 0 0 0.46161 1 12651 12651 14.838 0 1 224040 20725 2991 12753 12762 24962 24962 0.07931815108406681 LAIFTAALTA 10 Unmodified _LAIFTAALTA_ 0 0 0 ENSG00000136834|ENST00000259357|OR1J1 ENSG00000136834|ENST00000259357|OR1J1 ENSG00000136834|ENST00000259357|OR1J1 MULTI-MSMS UPN47_class_I_Rep_2 3 496.2948913574219 2 496.294768 990.574983 0.32597 0.00016178 -0.54897 -0.00027245 -0.223 -0.00011068 496.2946147837266 56.196 0.90996 59.496 59.091 60.001 3.3009 136 54 3 0 0 0 0.46161 2 12921 12773;12921 14.838 0 1 238790 20726 2991 12753 12762 24963;24964 24964 0.07931815108406681 LAILRLLWFH 10 Unmodified _LAILRLLWFH_ 0 0 0 L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|140|2|anti-sense L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|140|2|anti-sense L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|140|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 427.30267333984375 3 427.932526 1280.77575 0.0091441 3.9131E-06 0.99225 0.00042462 1.0014 0.00042853 427.9329208684967 62.661 0.20582 66.02 65.87 66.076 3.3595 11 10 2 0 0 0 0.84575 1 14763 14763 1.9064 0 1 35661 20727 9364 12754 12763 24965 24965 0.14659129215738176 LAIRALFWLH 10 Unmodified _LAIRALFWLH_ 0 0 0 L1PA16_dup6240|chr7:92181695-92183233:-|1.1085636886041188|0.4935019538047792|1.17|151.0|69|1|anti-sense;L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|329|3|anti-sense L1PA16_dup6240|chr7:92181695-92183233:-|1.1085636886041188|0.4935019538047792|1.17|151.0|69|1|anti-sense L1PA16_dup6240|chr7:92181695-92183233:-|1.1085636886041188|0.4935019538047792|1.17|151.0|69|1|anti-sense MSMS UPN47_class_I_Rep_1 2 620.371337890625 2 620.371675 1238.7288 NaN NaN NaN NaN NaN NaN NaN 85.699 1 89.291 88.791 89.791 3.5914 0 0 0 0.53105 1 21400 21400 0.45834 0 1 20728 14110 12755 12764 24966 24966 0.11898269664584404 LAISLLGVP 9 Unmodified _LAISLLGVP_ 0 0 0 REV__L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|97|3|anti-sense REV__L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|97|3|anti-sense MSMS UPN47_class_I_Rep_1 2 441.78790283203125 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 41.167 1 44.839 44.339 45.339 3.6719 0 0 0 0.39518 1 8237 8237 1.8442 0 1 + 20729 25990 12756 12765 24967 24967 0.11308733942325944 LAIYNVQVG 9 Unmodified _LAIYNVQVG_ 0 0 0 L1M5_dup49094|chr18:175072-176224:-|1.1496702766176488|0.0150695548698507|6.25|151.0|9|1|sense L1M5_dup49094|chr18:175072-176224:-|1.1496702766176488|0.0150695548698507|6.25|151.0|9|1|sense L1M5_dup49094|chr18:175072-176224:-|1.1496702766176488|0.0150695548698507|6.25|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.7770080566406 2 488.776742 975.538931 0.1847 9.0278E-05 -0.40562 -0.00019826 -0.22092 -0.00010798 488.7765162507918 71.669 0.67667 74.888 74.624 75.3 3.2188 77 54 2 0 0 0 0.40174 1 17639 17639 7.9102 0.62092 1 127530 20730 9193 12757 12766 24968 24968 0.05018357931578521 LAIYSLGVAL 10 Unmodified _LAIYSLGVAL_ 0 0 0 REV__L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|175|1|anti-sense REV__L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|175|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 510.8435974121094 2 510.310418 1018.60628 0.29675 0.00015143 -0.25386 -0.00012955 0.042888 2.1886E-05 510.3104004823842 78.315 0.11913 78.315 78.28 78.399 0 16 13 2 0 0 0 0.84575 1 18332 18332 13.906 0 1 131660 + 20731 24790 12758 12767 24969 24969 0.09772388142516775 LAKANRRN 8 Unmodified _LAKANRRN_ 0 0 0 MER11B_dup100|chr3:122443536-122444603:-|1.709927646121582|0.3105153873607571|2.46|151.0|18|2|sense;MER11C_dup879|chr20:56520679-56521654:-|1.2559795278925467|0.2313669445267357|2.44|151.0|5|1|sense MER11B_dup100|chr3:122443536-122444603:-|1.709927646121582|0.3105153873607571|2.46|151.0|18|2|sense MER11B_dup100|chr3:122443536-122444603:-|1.709927646121582|0.3105153873607571|2.46|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 471.79559326171875 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 117.66 1 121.28 120.78 121.78 3.6215 0 0 0 0.40746 1 28676 28676 0.69038 0 1 20732 15788 12759 12768 24970 24970 0.0787823383432169 LAKCLVWE 8 Unmodified _LAKCLVWE_ 0 0 0 ENST00000564806.1_1_16:30036506-30036905:-|nuORF ENST00000564806.1_1_16:30036506-30036905:-|nuORF ENST00000564806.1_1_16:30036506-30036905:-|nuORF MSMS UPN47_class_I_Rep_2 3 481.2765197753906 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 68.161 1 71.431 70.931 71.931 3.2696 0 0 0 0.40364 1 16479 16479 5.7604 0 1 20733 7479 12760 12769 24971 24971 0.02843917030781995 LAKDSQVLL 9 Unmodified _LAKDSQVLL_ 0 0 0 REV__HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|75|2|sense REV__HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|75|2|sense MSMS UPN47_class_I_Rep_3 4 493.7974548339844 2 493.797675 985.580796 NaN NaN NaN NaN NaN NaN NaN 56.351 1 59.523 59.023 60.023 3.1721 0 0 0 0.3967 1 12947 12947 1.4819 0 1 + 20734 23787 12761 12770 24972 24972 0.08742913620108084 LAKIQKKI 8 Unmodified _LAKIQKKI_ 0 0 0 L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 471.3282470703125 2 471.328945 940.643337 NaN NaN NaN NaN NaN NaN NaN 16.912 1 20.274 19.774 20.774 3.3619 0 0 0 0.4044 1 1141 1141 4.756 0 1 20735 11763 12762 12771 24973 24973 0.17064104478936315 LAKIQKKI 8 Unmodified _LAKIQKKI_ 0 0 0 L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 471.32830810546875 2 471.328945 940.643337 NaN NaN NaN NaN NaN NaN NaN 17.159 1 20.517 20.017 21.017 3.3581 0 0 0 0.4044 1 1206 1206 4.756 0 1 20736 11763 12762 12771 24974 24974 0.17064104478936315 LAKIQKKI 8 Unmodified _LAKIQKKI_ 0 0 0 L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense L1MC5a_dup7793|chr7:140812686-140813806:+|2.2509217012793625|0.0370768748017118|5.92|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 471.328125 2 471.328945 940.643337 NaN NaN NaN NaN NaN NaN NaN 17.281 1 20.639 20.139 21.139 3.3581 0 0 0 0.39819 1 1239 1239 8.5933 0 1 20737 11763 12762 12771 24975 24975 0.17064104478936315 LAKKGKEW 8 Unmodified _LAKKGKEW_ 0 0 0 ENST00000460528.1_1_7:128519440-128519819:-|nuORF ENST00000460528.1_1_7:128519440-128519819:-|nuORF ENST00000460528.1_1_7:128519440-128519819:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 480.2869567871094 2 480.287277 958.560001 -0.19683 -9.4537E-05 0.17244 8.2819E-05 -0.024397 -1.1718E-05 480.287215183799 43.545 0.76057 47.233 47.009 47.769 3.6875 90 44 3 0 0 0 0.82752 1 9097 9097 0.69038 0 1 123200 20738 6853 12763 12772 24976 24976 0.0790636803109237 LAKKGKEW 8 Unmodified _LAKKGKEW_ 0 0 0 ENST00000460528.1_1_7:128519440-128519819:-|nuORF ENST00000460528.1_1_7:128519440-128519819:-|nuORF ENST00000460528.1_1_7:128519440-128519819:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.287109375 2 480.287277 958.560001 -0.087332 -4.1944E-05 0.07157 3.4374E-05 -0.015762 -7.5702E-06 480.28720171646427 44.447 0.14648 47.802 47.753 47.9 3.3556 12 10 2 0 0 0 0.82752 1 9280 9280 0.69038 0 1 32951 20739 6853 12763 12772 24977 24977 0.0790636803109237 LAKKGKEW 8 Unmodified _LAKKGKEW_ 0 0 0 ENST00000460528.1_1_7:128519440-128519819:-|nuORF ENST00000460528.1_1_7:128519440-128519819:-|nuORF ENST00000460528.1_1_7:128519440-128519819:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.28729248046875 2 480.287277 958.560001 -0.17992 -8.6412E-05 0.051516 2.4742E-05 -0.1284 -6.167E-05 480.28726599963414 44.115 0.85936 47.359 47.076 47.936 3.2441 86 48 2 0 0 0 0.82752 1 9333 9333 0.69038 0 1 119150 20740 6853 12763 12772 24978 24978 0.0790636803109237 LAKPAWMK 8 Unmodified _LAKPAWMK_ 0 0 0 REV__THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|80|3|anti-sense REV__THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_3 4 472.7713623046875 2 472.772948 943.531344 NaN NaN NaN NaN NaN NaN NaN 111.79 1 115.31 114.81 115.81 3.5207 0 0 0 0.40604 1 27451 27451 2.5775 0.51773 1 + 20741 32305 12764 12773 24979 24979 0.05731927130295844 LAKQRVKGL 9 Unmodified _LAKQRVKGL_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.8343811035156 2 506.834926 1011.6553 0.24316 0.00012324 -0.1916 -9.7111E-05 0.051557 2.6131E-05 506.83474329909467 53.377 1.1642 56.897 56.527 57.691 3.5192 139 84 3 0 0 0 0.40174 2 11316 11316;11360 7.9102 3.1541 1 517840 20742 16559 12765 12774 24980;24981 24980 0.14993721222128897 LAKQRVKGL 9 Unmodified _LAKQRVKGL_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.83502197265625 2 506.834926 1011.6553 0.37728 0.00019122 -0.27871 -0.00014126 0.098569 4.9958E-05 506.8346908244488 53.305 1.0324 56.915 56.525 57.558 3.6098 138 70 3 0 0 0 0.33654 3 11180 11142;11180;11219 11.64 3.7301 1 557270 20743 16559 12765 12774 24982;24983;24984 24983 0.14993721222128897 LAKQRVKGL 9 Unmodified _LAKQRVKGL_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.83538818359375 2 506.834926 1011.6553 0.12709 6.4412E-05 -0.1361 -6.8982E-05 -0.0090159 -4.5696E-06 506.8347589365335 53.609 1.1164 57.193 56.498 57.615 3.5836 154 81 3 0 0 0 0.32219 2 11124 11072;11124 12.532 3.9383 1 391240 20744 16559 12765 12774 24985;24986 24986 0.14993721222128897 LAKRRHAEL 9 Unmodified _LAKRRHAEL_ 0 0 0 ENSG00000128408|ENST00000614167|RIBC2 ENSG00000128408|ENST00000614167|RIBC2 ENSG00000128408|ENST00000614167|RIBC2 MSMS UPN48_class_I_Rep_3 7 547.332275390625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 73.192 1 76.729 76.229 77.229 3.5373 0 0 0 0.4007 1 17112 17112 0.52476 0 1 20745 2590 12766 12775 24987 24987 0.10899051448268438 LAKSLSILFIF 11 Unmodified _LAKSLSILFIF_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense;L1M3_dup6687|chr22:19344037-19345261:+|1.6180506990199663|0.1523425184574915|3.41|150.0|87|3|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3877563476562 2 626.389199 1250.76385 0.63455 0.00039748 -2.5046 -0.0015688 -1.87 -0.0011714 626.387819608458 103.63 0.2744 107.16 106.92 107.19 3.5231 76 41 2 0 0 0 0.57992 1 25183 25183 5.7319 0 1 42789000 20746 8776 12767 12776 24988 24988 0.14849467681892747 LAKSLSILFIF 11 Unmodified _LAKSLSILFIF_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense;L1M3_dup6687|chr22:19344037-19345261:+|1.6180506990199663|0.1523425184574915|3.41|150.0|87|3|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3870849609375 2 626.389199 1250.76385 0.42787 0.00026801 -2.123 -0.0013299 -1.6952 -0.0010618 626.8890218634626 104.39 0.41526 108.02 107.94 108.36 3.6247 88 59 2 0 0 0 0.57992 1 25229 25229 5.7319 0 1 63602000 20747 8776 12767 12776 24989 24989 0.14849467681892747 LAKSLSILFIF 11 Unmodified _LAKSLSILFIF_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense;L1M3_dup6687|chr22:19344037-19345261:+|1.6180506990199663|0.1523425184574915|3.41|150.0|87|3|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|227|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 626.389199 1250.76385 0.51234 0.00032093 -3.869 -0.0024235 -3.3566 -0.0021025 626.3859046177781 104.6 0.03022 108.12 108.1 108.13 3.5205 0.00012951 -0.0018497 NaN 5.7319 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 12769000 20748 8776 12767 12776 0.14849467681892747 LAKTNLFSILQ 11 Unmodified _LAKTNLFSILQ_ 0 0 0 L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|75|1|anti-sense L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|75|1|anti-sense L1MD1_dup3659|chr9:92435336-92436918:-|2.6472774321507413|0.0438470280055646|5.92|151.0|75|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 624.3699340820312 2 624.371538 1246.72852 0.49401 0.00030845 0.12672 7.9119E-05 0.62073 0.00038757 624.3713751799173 92.161 0.20018 95.924 95.838 96.038 3.7629 44 28 2 0 0 0 0.65821 1 21947 21947 2.4985 0 1 1156800 20749 11934 12768 12777 24990 24990 0.11502805154077578 LAKYQQVL 8 Unmodified _LAKYQQVL_ 0 0 0 HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|223|3|sense;HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|25|2|sense;HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|71|3|sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|223|3|sense HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|223|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.302978515625 2 481.78711 961.559667 0.092691 4.4658E-05 0.025634 1.235E-05 0.11833 5.7008E-05 481.7870801012019 68.245 0.81862 71.61 71.181 72 3.3646 82 64 2 0 0 0 0.82752 1 16504 16504 14.582 0 1 81278 20750 8018 12769 12778 24991 24991 0.07734948311224343 LALADDKKL 9 Unmodified _LALADDKKL_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MSMS UPN47_class_I_Rep_3 4 493.79742431640625 2 493.797675 985.580796 NaN NaN NaN NaN NaN NaN NaN 56.03 1 59.202 58.702 59.702 3.1721 0 0 0 0.18866 1 12850 12850 17.113 0 1 20751 609 12770 12779 24992 24992 0.08742913620085346 LALAHSVEI 9 Unmodified _LALAHSVEI_ 0 0 0 REV__nc|ENSG00000175879|P13378-3|HOXD8 REV__nc|ENSG00000175879|P13378-3|HOXD8 MULTI-MSMS UPN47_class_I_Rep_3 4 476.77685546875 2 476.776742 951.538931 0.016537 7.8842E-06 -0.11313 -5.3939E-05 -0.096597 -4.6055E-05 476.77666562406165 62.874 0.78542 66.044 65.717 66.502 3.1698 75 45 2 0 0 0 0.17468 1 14995 14995 23.148 0 1 148970 + 20752 20570 12771 12780 24993 24993 0.06122357931565148 LALASSKEV 9 Unmodified _LALASSKEV_ 0 0 0 ENSG00000227059|ENST00000545940|ANHX ENSG00000227059|ENST00000545940|ANHX ENSG00000227059|ENST00000545940|ANHX MSMS UPN47_class_I_Rep_2 3 459.26959228515625 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 41.239 1 44.604 44.104 45.104 3.3655 0 0 0 0.38073 1 8291 8291 5.2969 0.96765 1 20753 5668 12772 12781 24994 24994 0.06134651694674176 LALDQLRQ 8 Unmodified _LALDQLRQ_ 0 0 0 REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|74|3|sense REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|74|3|sense MSMS UPN47_class_I_Rep_3 4 478.7799987792969 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 50.027 1 53.253 52.753 53.753 3.2262 0 0 0 0.40643 1 11016 11016 2.0598 0 1 + 20754 23943 12773 12782 24995 24995 0.06552876163095789 LALEKEKA 8 Unmodified _LALEKEKA_ 0 0 0 nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT nc|ENSG00000122966|O14578-3|CIT nc|ENSG00000122966|O14578-3|CIT MULTI-MSMS UPN47_class_I_Rep_2 3 451.2706298828125 2 451.271293 900.528032 -0.14361 -6.4807E-05 -0.042076 -1.8988E-05 -0.18568 -8.3794E-05 451.27111494632106 50.167 0.77085 53.51 53.25 54.021 3.3431 47 38 2 0 0 0 0.82752 3 10965 10965;10968;11032 13.906 0 1 65223 20755 2404 12774 12783 24996;24997;24998 24996 0.07378955557271638 LALEKEKA 8 Unmodified _LALEKEKA_ 0 0 0 nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT nc|ENSG00000122966|O14578-3|CIT nc|ENSG00000122966|O14578-3|CIT MULTI-SECPEP UPN47_class_I_Rep_3 4 451.76275634765625 2 451.271293 900.528032 -0.17102 -7.7174E-05 0.030946 1.3965E-05 -0.14007 -6.3209E-05 451.2711910498339 50.274 0.7848 53.5 53.219 54.003 3.2262 56 45 2 0 0 0 0.72333 1 11040 11040 3.5965 0 1 48947 20756 2404 12774 12783 24999 24999 0.07378955557271638 LALENEYKL 9 Unmodified _LALENEYKL_ 0 0 0 REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 546.8001708984375 2 546.800414 1091.58628 0.52142 0.00028511 -0.062531 -3.4192E-05 0.45888 0.00025092 546.8001136683803 56.272 0.67078 59.773 59.434 60.104 3.5014 108 54 3 0 0 0 0.26948 1 12099 12099 15.847 0 1 303710 + + 20757 17474 12775 12784 25000 25000 0.04414592411899321 LALEWEDRAI 10 Unmodified _LALEWEDRAI_ 0 0 0 REV__L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|2|1|sense REV__L1MC4_dup16311|chr11:17308136-17308592:-|1.664239762794557|0.0392057952925179|5.41|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 405.8841552734375 3 405.883789 1214.62954 NaN NaN NaN NaN NaN NaN NaN 67.633 1 71.084 70.584 71.584 3.4517 0 0 0 0.53105 1 15560 15560 0.77653 0 1 + 20758 26835 12776 12785 25001 25001 0.030807821891812637 LALGREAAEF 10 Unmodified _LALGREAAEF_ 0 0 0 L1ME3A_dup14821|chr20:8233543-8234113:-|1.4291644183793084|0.0069122702821592|7.69|151.0|13|2|sense L1ME3A_dup14821|chr20:8233543-8234113:-|1.4291644183793084|0.0069122702821592|7.69|151.0|13|2|sense L1ME3A_dup14821|chr20:8233543-8234113:-|1.4291644183793084|0.0069122702821592|7.69|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.789794921875 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.31093 1 12391 12391 29.841 1.3461 1 312930 20759 12650 12777 12786 25002 25002 0.03144841471953441 LALGREAAEF 10 Unmodified _LALGREAAEF_ 0 0 0 L1ME3A_dup14821|chr20:8233543-8234113:-|1.4291644183793084|0.0069122702821592|7.69|151.0|13|2|sense L1ME3A_dup14821|chr20:8233543-8234113:-|1.4291644183793084|0.0069122702821592|7.69|151.0|13|2|sense L1ME3A_dup14821|chr20:8233543-8234113:-|1.4291644183793084|0.0069122702821592|7.69|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 538.7894897460938 2 538.790381 1075.56621 0.406 0.00021875 -0.7016 -0.00037801 -0.29559 -0.00015926 538.7900663930279 55.338 1.3768 58.515 57.797 59.174 3.1779 124 83 2 0 0 0 0.35325 1 12575 12575 23.79 2.2528 1 316940 20760 12650 12777 12786 25003 25003 0.03144841471953441 LALHAIEW 8 Unmodified _LALHAIEW_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MULTI-MSMS UPN47_class_I_Rep_1 2 476.77667236328125 2 476.766178 951.517802 0.12646 6.0292E-05 -0.18773 -8.9503E-05 -0.061268 -2.9211E-05 476.7660570479421 62.174 0.68329 65.542 65.359 66.043 3.3681 75 43 2 0 0 0 0.82752 1 14707 14707 11.114 0.93107 1 119710 20761 16755 12778 12787 25004 25004 0.040103926226947806 LALHAIEW 8 Unmodified _LALHAIEW_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MULTI-MSMS UPN47_class_I_Rep_2 3 476.7658996582031 2 476.766178 951.517802 0.12957 6.1777E-05 -0.66348 -0.00031633 -0.53391 -0.00025455 476.7657701164276 62.582 0.69913 65.838 65.503 66.203 3.2558 67 45 2 0 0 0 0.82752 3 14814 14814;14835;14877 11.114 1.1234 1 114610 20762 16755 12778 12787 25005;25006;25007 25005 0.040103926226947806 LALHAIEW 8 Unmodified _LALHAIEW_ 0 0 0 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 nc|ENSG00000172426|Q9H1X1-2|RSPH9 MULTI-MSMS UPN47_class_I_Rep_3 4 476.76580810546875 2 476.766178 951.517802 0.0122 5.8167E-06 -0.50248 -0.00023957 -0.49028 -0.00023375 476.7657826484167 62.666 0.75949 65.836 65.453 66.213 3.1698 66 43 2 0 0 0 0.82752 2 14888 14888;14951 11.114 2.5212 1 105850 20763 16755 12778 12787 25008;25009 25008 0.040103926226947806 LALHKPSLL 9 Unmodified _LALHKPSLL_ 0 0 0 REV__ENSG00000079335.20,CDC14A,chr1,+,I22.1,100504938,100518250|87|7.64|1|intron REV__ENSG00000079335.20,CDC14A,chr1,+,I22.1,100504938,100518250|87|7.64|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 496.3185119628906 2 496.318577 990.622602 0.16891 8.3833E-05 -0.10418 -5.1705E-05 0.064734 3.2129E-05 496.31845402844425 43.306 0.81753 46.945 46.623 47.441 3.6385 92 62 2 0 0 0 0.36392 1 8008 8008 10.074 0.6908 1 142460 + 20764 17893 12779 12788 25010 25010 0.12691514099276446 LALINHPEL 9 Unmodified _LALINHPEL_ 0 0 0 ENSG00000176922|ENST00000322101|OR51S1 ENSG00000176922|ENST00000322101|OR51S1 ENSG00000176922|ENST00000322101|OR51S1 MULTI-MSMS UPN48_class_I_Rep_2 6 510.2976379394531 2 510.297842 1018.58113 0.36228 0.00018487 -0.2725 -0.00013906 0.089776 4.5813E-05 510.29773304879245 63.365 0.19888 66.838 66.748 66.947 3.4738 22 18 2 0 0 0 0.43153 1 14245 14245 6.2058 0 1 99389 20765 4772 12780 12789 25011 25011 0.07258333339939327 LALKKPRG 8 Unmodified _LALKKPRG_ 0 0 0 REV__chr6:34243518-34243616|46|16.98|0.69|4.62|+|0|HMGA1,None|1 REV__chr6:34243518-34243616|46|16.98|0.69|4.62|+|0|HMGA1,None|1 MSMS UPN47_class_I_Rep_1 2 441.7879333496094 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 36.171 1 39.847 39.347 40.347 3.6762 0 0 0 0.40604 1 6721 6721 2.5775 0 1 + 20766 17454 12781 12790 25012 25012 0.13554378130606892 LALLLETGVP 10 Unmodified _LALLLETGVP_ 0 0 0 REV__ENSG00000108582|ENST00000225719|CPD REV__ENSG00000108582|ENST00000225719|CPD MSMS UPN48_class_I_Rep_1 5 513.3169555664062 2 513.3157 1024.61685 NaN NaN NaN NaN NaN NaN NaN 45.819 1 49.335 48.835 49.835 3.5162 0 0 0 0.53105 1 8878 8878 3.2813 0 1 + + 20767 18386 12782 12791 25013 25013 0.10552370796949617 LALLLETGVP 10 Unmodified _LALLLETGVP_ 0 0 0 REV__ENSG00000108582|ENST00000225719|CPD REV__ENSG00000108582|ENST00000225719|CPD MULTI-SECPEP UPN48_class_I_Rep_3 7 513.3167724609375 2 513.3157 1024.61685 0.2306 0.00011837 2.5701 0.0013193 2.8007 0.0014376 513.3168003452695 41.699 0.10411 45.345 45.297 45.401 3.6458 18 11 2 0 0 0 0.84575 1 7564 7564 1.4819 0.79152 1 60446 + + 20768 18386 12782 12791 25014 25014 0.10552370796949617 LALLLETGVP 10 Unmodified _LALLLETGVP_ 0 0 0 REV__ENSG00000108582|ENST00000225719|CPD REV__ENSG00000108582|ENST00000225719|CPD MULTI-MATCH UPN48_class_I_Rep_1 5 2 513.3157 1024.61685 0.25442 0.0001306 2.3666 0.0012148 2.6211 0.0013454 513.3168908032909 42.228 0.091621 45.736 45.671 45.762 3.5079 0.19562 -0.00016515 NaN 1.4819 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 42620 + + 20769 18386 12782 12791 0.10552370796949617 LALLLPFRCGC 11 Unmodified _LALLLPFRCGC_ 0 0 0 REV__nc|ENSG00000123096|Q14714-2|SSPN REV__nc|ENSG00000123096|Q14714-2|SSPN MSMS UPN48_class_I_Rep_3 7 603.3311767578125 2 603.330304 1204.64606 NaN NaN NaN NaN NaN NaN NaN 26.621 1 30.388 29.888 30.888 3.7663 0 0 0 0.38417 1 3396 3396 0.30703 0 1 + 20770 18772 12783 12792 25015 25015 0.05191868549945866 LALLVQRA 8 Unmodified _LALLVQRA_ 0 0 0 ENSG00000250298|ENST00000638719|GIMD1 ENSG00000250298|ENST00000638719|GIMD1 ENSG00000250298|ENST00000638719|GIMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 442.2898254394531 2 442.28982 882.565087 -0.18848 -8.3361E-05 0.56441 0.00024963 0.37593 0.00016627 442.29007759411655 54.353 0.5586 57.671 57.34 57.899 3.3187 41 27 2 0 0 0 0.82752 1 12258 12258 18.135 0 1 54158 20771 5738 12784 12793 25016 25016 0.11910671893701874 LALNGLFIY 9 Unmodified _LALNGLFIY_ 0 0 0 REV__OR5K4|p.L197Qfs*2|1|0.05|ENSG00000196098|chr3:98354443-98354443|T/-|frameshift_variant REV__OR5K4|p.L197Qfs*2|1|0.05|ENSG00000196098|chr3:98354443-98354443|T/-|frameshift_variant MSMS UPN47_class_I_Rep_3 4 512.2959594726562 2 512.29731 1022.58007 NaN NaN NaN NaN NaN NaN NaN 63.744 1 66.919 66.419 67.419 3.1741 0 0 0 0.38478 1 15198 15198 4.3292 0 1 + 20772 21015 12785 12794 25017 25017 0.06968118971019521 LALPPGKMR 9 Unmodified _LALPPGKMR_ 0 0 0 ENST00000245414.8_1_5:131819408-131819492:-|nuORF ENST00000245414.8_1_5:131819408-131819492:-|nuORF ENST00000245414.8_1_5:131819408-131819492:-|nuORF MSMS UPN47_class_I_Rep_1 2 491.7961730957031 2 491.796955 981.579357 NaN NaN NaN NaN NaN NaN NaN 60.065 1 63.463 62.963 63.963 3.3982 0 0 0 0.39428 1 13994 13994 2.0598 1.2661 1 20773 5906 12786 12795 25018 25018 0.08783001050346684 LALQLRRS 8 Unmodified _LALQLRRS_ 0 0 0 REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF MSMS UPN47_class_I_Rep_2 3 478.80181884765625 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 63.221 1 66.477 65.977 66.977 3.2558 0 0 0 0.40604 1 14985 14985 2.5775 0 1 + 20774 22234 12787 12796 25019 25019 0.11312575153931448 LALQVPLGY 9 Unmodified _LALQVPLGY_ 0 0 0 L1PA7_dup2470|chr3:114531690-114538145:+|2.5651913102235864|0.0791595561736741|5.02|151.0|396|3|anti-sense L1PA7_dup2470|chr3:114531690-114538145:+|2.5651913102235864|0.0791595561736741|5.02|151.0|396|3|anti-sense L1PA7_dup2470|chr3:114531690-114538145:+|2.5651913102235864|0.0791595561736741|5.02|151.0|396|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.2895812988281 2 487.289485 972.564418 0.24676 0.00012024 0.034657 1.6888E-05 0.28141 0.00013713 487.289395923237 57.543 0.71383 61.037 60.603 61.317 3.4942 112 62 2 0 0 0 0.48846 1 12511 12511 1.8442 0 1 306960 20775 14786 12788 12797 25020 25020 0.07703832454001258 LALQWRPL 8 Unmodified _LALQWRPL_ 0 0 0 REV__ENSG00000154174|ENST00000284320|TOMM70 REV__ENSG00000154174|ENST00000284320|TOMM70 MSMS UPN47_class_I_Rep_1 2 498.80322265625 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 50.482 1 54.11 53.61 54.61 3.6285 0 0 0 0.40625 1 11073 11073 2.3027 0 1 + 20776 19729 12789 12798 25021 25021 0.09366360785031702 LALSLVSY 8 Unmodified _LALSLVSY_ 0 0 0 L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|128|1|anti-sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|128|1|anti-sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|128|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 433.2550048828125 2 433.255111 864.49567 0.14101 6.1094E-05 -1.0684 -0.00046291 -0.92744 -0.00040182 433.25527849508586 96.653 2.4054 100.43 99.918 102.32 3.7767 862 332 5 0 0 0 0.82752 1 24046 24046 14.582 0 1 84981000 20777 8649 12790 12799 25022 25022 0.058001681542691585 LALSLVSY 8 Unmodified _LALSLVSY_ 0 0 0 L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|128|1|anti-sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|128|1|anti-sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|128|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 433.255111 864.49567 0.14121 6.1181E-05 -0.66649 -0.00028876 -0.52527 -0.00022758 433.2548851453789 100.54 0.66408 100.54 100.05 100.71 0 0.22219 8.8714E-05 NaN 14.582 149 77 2 NaN NaN NaN NaN 0 NaN NaN 0 11506000 20778 8649 12790 12799 0.058001681542691585 LALSPLKERQR 11 Unmodified _LALSPLKERQR_ 0 0 0 REV__nc|ENSG00000059122|Q4VC44-2|FLYWCH1 REV__nc|ENSG00000059122|Q4VC44-2|FLYWCH1 MULTI-MSMS UPN48_class_I_Rep_1 5 437.6012268066406 3 437.601616 1309.78302 -0.045119 -1.9744E-05 -0.98966 -0.00043308 -1.0348 -0.00045282 437.93564481085616 97.728 0.39264 101.34 101.21 101.6 3.6088 72 48 2 0 0 0 0.68024 1 23590 23590 0.50596 0 1 96269 + 20779 17716 12791 12800 25023 25023 0.14051817025483615 LALTKLPTFS 10 Unmodified _LALTKLPTFS_ 0 0 0 ENST00000378487.2_1_12:92813988-92814823:-|nuORF ENST00000378487.2_1_12:92813988-92814823:-|nuORF ENST00000378487.2_1_12:92813988-92814823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 545.8294067382812 2 545.828975 1089.6434 0.36337 0.00019834 -0.078531 -4.2865E-05 0.28483 0.00015547 545.8288284457559 53.422 1.6957 56.949 56.665 58.361 3.5278 179 100 3 0 0 0 0.56354 1 12305 12305 1.3295 1.3295 1 219820 20780 6469 12792 12801 25024 25024 0.10216059688264068 LALVIGSSFI 10 Unmodified _LALVIGSSFI_ 0 0 0 L1MC3_dup7483|chrX:107078789-107080297:-|2.8360101380958542|0.3434872498992555|3.05|151.0|63|1|anti-sense L1MC3_dup7483|chrX:107078789-107080297:-|2.8360101380958542|0.3434872498992555|3.05|151.0|63|1|anti-sense L1MC3_dup7483|chrX:107078789-107080297:-|2.8360101380958542|0.3434872498992555|3.05|151.0|63|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.9389953613281 2 510.310418 1018.60628 0.29583 0.00015097 0.11788 6.0155E-05 0.41371 0.00021112 510.31037265678077 78.113 0.42264 78.113 77.775 78.197 0 79 46 2 0 0 0 0.51565 1 18201 18201 10.074 0 1 666010 20781 11366 12793 12802 25025 25025 0.09772388142539512 LALVPDEL 8 Unmodified _LALVPDEL_ 0 0 0 MLT1L_dup5481|chr7:105622491-105623071:+|1.0008554921107458|0.103835192242689|3.27|151.0|6|1|sense;nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2 MLT1L_dup5481|chr7:105622491-105623071:+|1.0008554921107458|0.103835192242689|3.27|151.0|6|1|sense MLT1L_dup5481|chr7:105622491-105623071:+|1.0008554921107458|0.103835192242689|3.27|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 435.2511291503906 2 435.252569 868.490584 NaN NaN NaN NaN NaN NaN NaN 69.123 1 72.491 71.991 72.991 3.3678 0 0 0 0.40746 1 16731 16731 0.69038 0 1 20782 1274 12794 12803 25026 25026 0.05107864291653641 LALVQRPIETR 11 Unmodified _LALVQRPIETR_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 432.8851623535156 3 432.597983 1294.77212 -0.3779 -0.00016348 -0.76951 -0.00033289 -1.1474 -0.00049637 432.5975748795489 99.549 0.37728 103 102.82 103.2 3.4483 89 54 3 0 0 0 22.551 1 24608 24608 0.40827 0.40827 1 152170 + 20783 24057 12795 12804 25027 25027 0.13652414651210165 LALVQRPIETR 11 Unmodified _LALVQRPIETR_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 432.597983 1294.77212 0.13867 5.9988E-05 -1.2816 -0.00055443 -1.143 -0.00049445 432.5973468756724 99.408 0.30051 103.2 103.09 103.39 3.7926 0.10095 -0.00034433 NaN 0 78 43 2 NaN NaN NaN NaN 0 NaN NaN 0 119640 + 20784 24057 12795 12804 0.13652414651210165 LALVQRPIETR 11 Unmodified _LALVQRPIETR_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 432.597983 1294.77212 -0.21323 -9.2241E-05 -1.0355 -0.00044795 -1.2487 -0.00054019 432.59744277877036 99.468 0.35074 102.97 102.76 103.11 3.4974 -0.13379 -2.4891E-05 NaN 0 83 51 3 NaN NaN NaN NaN 0 NaN NaN 0 168990 + 20785 24057 12795 12804 0.13652414651210165 LALVQRPIETR 11 Unmodified _LALVQRPIETR_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|74|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 432.597983 1294.77212 -0.068694 -2.9717E-05 -2.5205 -0.0010904 -2.5892 -0.0011201 432.9318540200164 99.627 0.039879 103.23 103.21 103.25 3.6065 0.13463 -0.0019522 NaN 0 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 58813 + 20786 24057 12795 12804 0.13652414651210165 LALVRVLQ 8 Unmodified _LALVRVLQ_ 0 0 0 ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;nc|ENSG00000160870|P24462-2|CYP3A7 ENSG00000160870|ENST00000336374|CYP3A7 ENSG00000160870|ENST00000336374|CYP3A7 MSMS UPN47_class_I_Rep_1 2 456.3060607910156 2 456.30547 910.596387 NaN NaN NaN NaN NaN NaN NaN 58.327 1 61.752 61.252 62.252 3.4247 0 0 0 0.40625 1 13460 13460 2.3027 0 1 20787 3891 12796 12805 25028 25028 0.137512449278006 LALVSGLAYL 10 Unmodified _LALVSGLAYL_ 0 0 0 REV__G0S2|p.V28A|1|0.06|ENSG00000123689|chr1:209675767-209675767|T/C|missense_variant REV__G0S2|p.V28A|1|0.06|ENSG00000123689|chr1:209675767-209675767|T/C|missense_variant MULTI-SECPEP UPN47_class_I_Rep_3 4 510.84381103515625 2 510.310418 1018.60628 0.2732 0.00013942 -0.13493 -6.8854E-05 0.13827 7.0562E-05 510.31028307704815 72.61 0.20892 75.837 75.794 76.003 3.2271 31 17 2 0 0 0 0.84575 1 17884 17884 19.257 0 1 101960 + 20788 23326 12797 12806 25029 25029 0.09772388142516775 LALVSGLAYL 10 Unmodified _LALVSGLAYL_ 0 0 0 REV__G0S2|p.V28A|1|0.06|ENSG00000123689|chr1:209675767-209675767|T/C|missense_variant REV__G0S2|p.V28A|1|0.06|ENSG00000123689|chr1:209675767-209675767|T/C|missense_variant MULTI-MATCH UPN47_class_I_Rep_2 3 2 510.310418 1018.60628 0.12449 6.3527E-05 -0.17019 -8.6848E-05 -0.0457 -2.3321E-05 510.310531916486 72.804 0.074394 76.101 76.045 76.12 3.2971 0.13192 -3.2545E-05 NaN 19.257 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 41326 + 20789 23326 12797 12806 0.09772388142516775 LALVVSYNL 9 Unmodified _LALVVSYNL_ 0 0 0 REV__L1MEd_dup16226|chr12:70286355-70287100:-|1.1484650834679235|0.0148804832927262|6.27|151.0|52|3|anti-sense REV__L1MEd_dup16226|chr12:70286355-70287100:-|1.1484650834679235|0.0148804832927262|6.27|151.0|52|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.2950439453125 2 496.294768 990.574983 0.13164 6.5333E-05 -0.33253 -0.00016503 -0.20089 -9.9701E-05 496.294735634463 55.889 0.76733 59.367 59.029 59.796 3.4785 115 44 3 0 0 0 0.37599 1 12814 12814 9.3831 0 1 224040 + 20790 28546 12798 12807 25030 25030 0.0793181510841805 LALVVSYNL 9 Unmodified _LALVVSYNL_ 0 0 0 REV__L1MEd_dup16226|chr12:70286355-70287100:-|1.1484650834679235|0.0148804832927262|6.27|151.0|52|3|anti-sense REV__L1MEd_dup16226|chr12:70286355-70287100:-|1.1484650834679235|0.0148804832927262|6.27|151.0|52|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 496.294921875 2 496.294768 990.574983 0.17532 8.7011E-05 -0.56426 -0.00028004 -0.38894 -0.00019303 496.29469360921024 56.245 0.95386 59.417 58.977 59.931 3.1721 132 61 3 0 0 0 0.35081 1 13036 13036 10.824 0 1 220780 + 20791 28546 12798 12807 25031 25031 0.0793181510841805 LAMTIVVARYQ 11 Unmodified _LAMTIVVARYQ_ 0 0 0 REV__L1MB7_dup8695|chr7:66763582-66764936:-|2.8534260658759063|0.1546184851610927|4.21|151.0|70|1|anti-sense REV__L1MB7_dup8695|chr7:66763582-66764936:-|2.8534260658759063|0.1546184851610927|4.21|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_2 6 632.85595703125 2 632.857741 1263.70093 NaN NaN NaN NaN NaN NaN NaN 71.049 1 74.585 74.085 75.085 3.5359 0 0 0 0.38417 1 16553 16553 4.897 0.95262 1 + 20792 26323 12799 12808 25032 25032 0.07962578622209548 LAMTIVVARYQ 11 Unmodified _LAMTIVVARYQ_ 0 0 0 REV__L1MB7_dup8695|chr7:66763582-66764936:-|2.8534260658759063|0.1546184851610927|4.21|151.0|70|1|anti-sense REV__L1MB7_dup8695|chr7:66763582-66764936:-|2.8534260658759063|0.1546184851610927|4.21|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_3 7 632.8560791015625 2 632.857741 1263.70093 NaN NaN NaN NaN NaN NaN NaN 71.139 1 74.658 74.158 75.158 3.5185 0 0 0 0.38417 1 16499 16499 4.897 0.95262 1 + 20793 26323 12799 12808 25033 25033 0.07962578622209548 LAMTRTFL 8 Unmodified _LAMTRTFL_ 0 0 0 nc|ENSG00000262085|Q8NH06|OR1P1 nc|ENSG00000262085|Q8NH06|OR1P1 nc|ENSG00000262085|Q8NH06|OR1P1 MSMS UPN47_class_I_Rep_3 4 476.7765197753906 2 476.767863 951.521173 NaN NaN NaN NaN NaN NaN NaN 63.093 1 66.262 65.762 66.762 3.1698 0 0 0 0.4032 1 15004 15004 6.3541 0 1 20794 16846 12800 12809 25034 25034 0.0434731940505344 LAMVPRRN 8 Unmodified _LAMVPRRN_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|48|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|48|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|48|2|sense MSMS UPN48_class_I_Rep_1 5 478.7776184082031 2 478.776554 955.538554 NaN NaN NaN NaN NaN NaN NaN 39.459 1 42.964 42.464 43.464 3.5048 0 0 0 0.40738 1 6970 6970 0.79363 0 1 20795 8410 12801 12810 25035 25035 0.0590065973073024 LANAAYFET 9 Unmodified _LANAAYFET_ 0 0 0 REV__nc|ENSG00000137251|Q9UJW2-2|TINAG REV__nc|ENSG00000137251|Q9UJW2-2|TINAG MULTI-MSMS UPN48_class_I_Rep_2 6 500.24212646484375 2 500.242732 998.470912 0.32218 0.00016117 -0.15777 -7.8926E-05 0.1644 8.2241E-05 500.2425014213015 65.034 0.52805 68.513 68.238 68.766 3.4792 57 37 2 0 0 0 0.46434 1 14829 14829 4.3292 0 1 104510 + 20796 19222 12802 12811 25036 25036 -0.02838511719107828 LANQQALRRQR 11 Unmodified _LANQQALRRQR_ 0 0 0 MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|3|1|sense MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|3|1|sense MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2671813964844 3 451.932248 1352.77491 0.19008 8.5902E-05 0.91513 0.00041358 1.1052 0.00049948 451.93260818767976 95.663 0.21358 95.663 95.603 95.817 0 35 22 2 0 0 0 0.68132 1 23271 23271 0.40827 0.40827 1 543210 20797 15759 12803 12812 25037 25037 0.11263682828735 LANRCKRL 8 Unmodified _LANRCKRL_ 0 0 0 Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|142|2|anti-sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|142|2|anti-sense Tigger1_dup5668|chr7:70173578-70175982:+|2.7911218754885847|0.0293993081107889|6.57|149.0|142|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.28961181640625 2 487.289828 972.565103 0.24675 0.00012024 -0.6687 -0.00032585 -0.42194 -0.00020561 487.289395923237 57.543 0.71383 61.037 60.603 61.317 3.4942 112 62 2 0 0 0 0.82752 1 12470 12470 5.7604 0 1 306960 20798 33128 12804 12813 25038 25038 0.0777234862205205 LANTLNPLE 9 Unmodified _LANTLNPLE_ 0 0 0 REV__ENSG00000130449|ENST00000252744|ZSWIM6 REV__ENSG00000130449|ENST00000252744|ZSWIM6 MSMS UPN47_class_I_Rep_3 4 492.77069091796875 2 492.771657 983.528761 NaN NaN NaN NaN NaN NaN NaN 34.65 1 37.914 37.414 38.414 3.2639 0 0 0 0.39036 1 6324 6324 2.9952 0 1 + 20799 18938 12805 12814 25039 25039 0.03633750206336117 LANYFSYTFT 10 Unmodified _LANYFSYTFT_ 0 0 0 REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|57|1|anti-sense REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|57|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 613.7896728515625 2 613.790047 1225.56554 0.51624 0.00031686 -0.14803 -9.0859E-05 0.36821 0.00022601 613.7896287157942 57.021 0.15444 60.515 60.424 60.579 3.4942 21 13 2 0 0 0 0.54822 1 12317 12317 5.7319 0.43497 1 97650 + 20800 26555 12806 12815 25040 25040 -0.038219979677933225 LANYFSYTFT 10 Unmodified _LANYFSYTFT_ 0 0 0 REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|57|1|anti-sense REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|57|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 613.78955078125 2 613.790047 1225.56554 0.59877 0.00036752 0.11948 7.3338E-05 0.71826 0.00044086 614.2917632642655 56.905 0.37394 60.439 60.267 60.641 3.5333 52 34 2 0 0 0 0.56333 1 12226 12226 1.4819 0.15237 1 74738 + 20801 26555 12806 12815 25041 25041 -0.038219979677933225 LAPACLGRTR 10 Unmodified _LAPACLGRTR_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.300048828125 2 529.300393 1056.58623 0.45895 0.00024292 -0.8969 -0.00047473 -0.43795 -0.00023181 529.2998012730784 108.69 0.33237 112.32 112.24 112.57 3.6355 48 31 2 0 0 0 0.54078 1 26774 26774 6.7232 0.51738 1 7720300 20802 15513 12807 12816 25042 25042 0.0602031393091238 LAPACLGRTR 10 Unmodified _LAPACLGRTR_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 529.300393 1056.58623 0.39716 0.00021022 -1.1595 -0.00061374 -0.76236 -0.00040352 529.2996745150122 108.76 0.50454 112.29 112.15 112.65 3.5333 -0.06304 0.00012665 NaN 6.7232 82 56 3 NaN NaN NaN NaN 0 NaN NaN 0 7516800 20803 15513 12807 12816 0.0602031393091238 LAPACLGRTR 10 Unmodified _LAPACLGRTR_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 529.300393 1056.58623 0.43732 0.00023147 -1.4524 -0.00076875 -1.0151 -0.00053728 529.2995825075348 108.71 0.4808 112.24 112.17 112.65 3.5382 -0.10975 -0.00018338 NaN 6.7232 83 51 2 NaN NaN NaN NaN 0 NaN NaN 0 6885200 20804 15513 12807 12816 0.0602031393091238 LAPACLGRTR 10 Unmodified _LAPACLGRTR_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 529.300393 1056.58623 0.31225 0.00016528 -1.2035 -0.000637 -0.89121 -0.00047172 529.299638456963 108.76 0.44778 112.39 112.24 112.69 3.6321 0.03694 8.0126E-05 NaN 6.7232 61 51 2 NaN NaN NaN NaN 0 NaN NaN 0 5054200 20805 15513 12807 12816 0.0602031393091238 LAPACLGRTR 10 Unmodified _LAPACLGRTR_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 529.300393 1056.58623 0.41541 0.00021988 -1.5438 -0.00081714 -1.1284 -0.00059726 529.2994521171597 108.81 0.32596 112.48 112.29 112.62 3.6746 0.1278 -0.00028017 NaN 6.7232 47 30 2 NaN NaN NaN NaN 0 NaN NaN 0 6017400 20806 15513 12807 12816 0.0602031393091238 LAPACLGRTR 10 Unmodified _LAPACLGRTR_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 529.300393 1056.58623 0.48273 0.00025551 -1.4398 -0.00076206 -0.95702 -0.00050655 529.2995332058009 108.72 0.43667 112.39 112.28 112.72 3.6751 0.040411 -0.00017001 NaN 6.7232 56 46 2 NaN NaN NaN NaN 0 NaN NaN 0 6164900 20807 15513 12807 12816 0.0602031393091238 LAPALHKVTV 10 Unmodified _LAPALHKVTV_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MSMS UPN46_class_I_Rep_3 1 524.8268432617188 2 524.829309 1047.64407 NaN NaN NaN NaN NaN NaN NaN 93.856 1 93.856 93.356 94.356 0 0 0 0 0.53105 1 22758 22758 9.3831 0 1 20808 4087 12808 12817 25043 25043 0.12214899127957324 LAPALKRLK 9 Unmodified _LAPALKRLK_ 0 0 0 REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|61|1|anti-sense REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|61|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 504.80902099609375 2 505.347669 1008.68079 0.30996 0.00015664 1.4934 0.0007547 1.8034 0.00091134 505.3488003009995 109.32 0.15868 112.85 112.81 112.96 3.5347 25 20 2 0 0 0 0.12527 1 26873 26873 0.6015 0 1 811740 + 20809 30812 12809 12818 25044 25044 0.17679195744551635 LAPALKRLK 9 Unmodified _LAPALKRLK_ 0 0 0 REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|61|1|anti-sense REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|61|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 505.347669 1008.68079 0.30514 0.0001542 0.59015 0.00029823 0.89529 0.00045243 505.348272879361 109.17 0.10655 112.84 112.78 112.89 3.6715 0.0274 0.00065509 NaN 0.6015 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 814920 + 20810 30812 12809 12818 0.17679195744551635 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 80.655 1 80.655 80.155 81.155 0 0 0 0 0.53105 1 19010 19010 1.6526 0.96225 1 20811 8133 12810 12819 25045 25045 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3328247070312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 91.372 1 91.372 90.872 91.872 0 0 0 0 0.53105 1 22068 22068 1.6526 0.96225 1 20812 8133 12810 12819 25046 25046 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3320922851562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 91.717 1 91.717 91.217 92.217 0 0 0 0 0.53105 1 22165 22165 1.6526 0.96225 1 20813 8133 12810 12819 25047 25047 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3325805664062 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 83.471 1 87.01 86.51 87.51 3.5386 0 0 0 0.53105 1 20876 20876 1.6526 0.85899 1 20814 8133 12810 12819 25048 25048 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.33251953125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 94.526 1 98.277 97.777 98.777 3.7508 0 0 0 0.53105 1 23482 23482 1.6526 0.96225 1 20815 8133 12810 12819 25049 25049 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3322143554688 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 95.29 1 99.055 98.555 99.555 3.7648 0 0 0 0.53105 1 23657 23657 1.6526 0.85899 1 20816 8133 12810 12819 25050 25050 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.33251953125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 95.481 1 99.246 98.746 99.746 3.7648 0 0 0 0.53105 1 23701 23701 1.6526 0.85899 1 20817 8133 12810 12819 25051 25051 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_3 4 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 67.079 1 70.27 69.77 70.77 3.1914 0 0 0 0.53105 1 16220 16220 1.6526 0.96225 1 20818 8133 12810 12819 25052 25052 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_1 5 547.33203125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 93.839 1 97.46 96.96 97.96 3.6208 0 0 0 0.53105 1 22566 22566 1.6526 0.85899 1 20819 8133 12810 12819 25053 25053 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3328857421875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 97.119 1 100.73 100.23 101.23 3.6088 0 0 0 0.53105 1 23426 23426 1.6526 0.85899 1 20820 8133 12810 12819 25054 25054 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3328247070312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 101.87 1 105.48 104.98 105.98 3.612 0 0 0 0.53105 1 24581 24581 1.6526 0.85899 1 20821 8133 12810 12819 25055 25055 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3324584960938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 106.63 1 110.26 109.76 110.76 3.6299 0 0 0 0.53105 1 25686 25686 1.6526 0.85899 1 20822 8133 12810 12819 25056 25056 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_3 7 547.3327026367188 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 66.013 1 69.52 69.02 70.02 3.5077 0 0 0 0.53105 1 14962 14962 1.6526 0 1 20823 8133 12810 12819 25057 25057 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_3 7 547.3316650390625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 66.176 1 69.684 69.184 70.184 3.5077 0 0 0 0.53105 1 15012 15012 1.6526 0 1 20824 8133 12810 12819 25058 25058 0.10899051448268438 LAPAPGKQRR 10 Unmodified _LAPAPGKQRR_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN48_class_I_Rep_3 7 547.3333129882812 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 77.326 1 80.928 80.428 81.428 3.6016 0 0 0 0.53105 1 18259 18259 1.6526 0.96225 1 20825 8133 12810 12819 25059 25059 0.10899051448268438 LAPAPGKRNL 10 Unmodified _LAPAPGKRNL_ 0 0 0 HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|155|3|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|155|3|anti-sense HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|155|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 518.817138671875 2 518.816733 1035.61891 0.32601 0.00016914 -1.2101 -0.0006278 -0.88405 -0.00045866 518.815965459761 107.99 0.67242 107.99 107.9 108.57 0 108 64 2 0 0 0 0.51565 1 26494 26494 10.074 1.3285 1 84087000 20826 8134 12811 12820 25060 25060 0.10252844325418664 LAPASKMII 9 Unmodified _LAPASKMII_ 0 0 0 ENSG00000214943|ENST00000399285|GPR33 ENSG00000214943|ENST00000399285|GPR33 ENSG00000214943|ENST00000399285|GPR33 MSMS UPN47_class_I_Rep_3 4 472.2874450683594 2 472.285889 942.557224 NaN NaN NaN NaN NaN NaN NaN 87.824 1 91.211 90.711 91.711 3.3873 0 0 0 0.38478 1 22018 22018 4.3292 1.7518 1 20827 5626 12812 12821 25061 25061 0.08364776581913702 LAPAVGRPRR 10 Unmodified _LAPAVGRPRR_ 0 0 0 REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF MSMS UPN46_class_I_Rep_3 1 546.840576171875 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 96.067 1 96.067 95.567 96.567 0 0 0 0 0.53105 1 23348 23348 6.7232 0.99131 1 + 20828 21523 12813 12822 25062 25062 0.12542757685173456 LAPAVGRPRR 10 Unmodified _LAPAVGRPRR_ 0 0 0 REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF MSMS UPN46_class_I_Rep_3 1 546.8404541015625 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 96.757 1 96.757 96.257 97.257 0 0 0 0 0.53105 1 23531 23531 1.6526 0 1 + 20829 21523 12813 12822 25063 25063 0.12542757685173456 LAPAVGRPRR 10 Unmodified _LAPAVGRPRR_ 0 0 0 REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 546.8404541015625 2 546.841074 1091.66759 0.59275 0.00032414 -1.0447 -0.00057126 -0.45191 -0.00024712 546.8400427032034 92.346 0.53715 95.811 95.786 96.323 3.4652 122 78 2 0 0 0 0.54078 3 22852 22852;22869;22916 6.7232 1.9439 1 462910 + 20830 21523 12813 12822 25064;25065;25066 25064 0.12542757685173456 LAPAVGRPRR 10 Unmodified _LAPAVGRPRR_ 0 0 0 REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF MSMS UPN48_class_I_Rep_1 5 546.8406982421875 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.626 1 96.25 95.75 96.75 3.624 0 0 0 0.53105 1 22257 22257 3.5965 0.60125 1 + 20831 21523 12813 12822 25067 25067 0.12542757685173456 LAPAVGRPRR 10 Unmodified _LAPAVGRPRR_ 0 0 0 REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF MSMS UPN48_class_I_Rep_1 5 546.8408813476562 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.977 1 96.601 96.101 97.101 3.624 0 0 0 0.53105 1 22341 22341 6.7232 0.99131 1 + 20832 21523 12813 12822 25068 25068 0.12542757685173456 LAPAVGRPRR 10 Unmodified _LAPAVGRPRR_ 0 0 0 REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF MSMS UPN48_class_I_Rep_3 7 546.84033203125 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.546 1 96.424 95.924 96.924 3.8782 0 0 0 0.53105 1 21940 21940 6.7232 0.99131 1 + 20833 21523 12813 12822 25069 25069 0.12542757685173456 LAPFHPRKK 9 Unmodified _LAPFHPRKK_ 0 0 0 REV__ENSG00000163632|ENST00000295896|C3orf49 REV__ENSG00000163632|ENST00000295896|C3orf49 MSMS UPN46_class_I_Rep_3 1 547.3328247070312 2 547.335093 1092.65563 NaN NaN NaN NaN NaN NaN NaN 102.28 1 102.28 101.78 102.78 0 0 0 0 0.40038 1 24959 24959 0.6015 0 1 + 20834 19992 12814 12823 25070 25070 0.11301140941986887 LAPHAPRARVL 11 Unmodified _LAPHAPRARVL_ 0 0 0 REV__ENST00000401450.3_1_22:29709292-29709661:-|nuORF REV__ENST00000401450.3_1_22:29709292-29709661:-|nuORF MSMS UPN48_class_I_Rep_3 7 400.91497802734375 3 400.915646 1199.72511 NaN NaN NaN NaN NaN NaN NaN 104.73 1 108.45 107.95 108.95 3.7192 0 0 0 0.38417 1 24727 24727 3.0723 0.33707 1 + 20835 18101 12815 12824 25071 25071 0.1332359989073666 LAPHVTSEI 9 Unmodified _LAPHVTSEI_ 0 0 0 ENST00000467936.5_1_3:45542057-45579920:+|nuORF;ENSG00000011376|ENST00000645846|LARS2 ENST00000467936.5_1_3:45542057-45579920:+|nuORF ENST00000467936.5_1_3:45542057-45579920:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.7661437988281 2 483.766374 965.518196 -0.00013206 -6.3884E-08 0.0038741 1.8741E-06 0.003742 1.8103E-06 483.76629583088646 50.45 0.62983 54.079 53.803 54.433 3.6285 42 28 2 0 0 0 0.26948 1 11088 11088 15.847 0 1 135690 20836 774 12816 12825 25072 25072 0.03405767551907957 LAPHVTSEI 9 Unmodified _LAPHVTSEI_ 0 0 0 ENST00000467936.5_1_3:45542057-45579920:+|nuORF;ENSG00000011376|ENST00000645846|LARS2 ENST00000467936.5_1_3:45542057-45579920:+|nuORF ENST00000467936.5_1_3:45542057-45579920:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 483.9805908203125 2 483.766374 965.518196 0.23986 0.00011604 -0.14465 -6.9976E-05 0.095214 4.6062E-05 483.7663238873892 50.718 0.54165 54.057 53.81 54.352 3.3386 54 29 2 0 0 0 0.12321 1 11239 11239 3.9444 0 1 113110 20837 774 12816 12825 25073 25073 0.03405767551907957 LAPHVTSEI 9 Unmodified _LAPHVTSEI_ 0 0 0 ENST00000467936.5_1_3:45542057-45579920:+|nuORF;ENSG00000011376|ENST00000645846|LARS2 ENST00000467936.5_1_3:45542057-45579920:+|nuORF ENST00000467936.5_1_3:45542057-45579920:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 483.7660827636719 2 483.766374 965.518196 0.20988 0.00010153 -0.18068 -8.7408E-05 0.029198 1.4125E-05 483.7662989701309 50.922 0.68162 54.138 53.789 54.47 3.2163 58 34 2 0 0 0 0.41259 2 11302 11302;11327 7.2892 0 1 130590 20838 774 12816 12825 25074;25075 25074 0.03405767551907957 LAPILKKWIR 10 Unmodified _LAPILKKWIR_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|11|1|sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 619.4097900390625 2 619.410801 1236.80705 NaN NaN NaN NaN NaN NaN NaN 94.286 1 97.758 97.258 98.258 3.472 0 0 0 0.53105 1 23245 23245 0.40072 0 1 + 20839 32417 12817 12826 25076 25076 0.1981170224980815 LAPKEALIPPA 11 Unmodified _LAPKEALIPPA_ 0 0 0 ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MSMS UPN48_class_I_Rep_2 6 560.3424072265625 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 94.772 1 98.548 98.048 99.048 3.7761 0 0 0 0.38417 1 22531 22531 1.0715 0.38109 1 20840 5314 12818 12827 25077 25077 0.11535748579603933 LAPLALYS 8 Unmodified _LAPLALYS_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_3 7 424.2497863769531 2 424.249829 846.485105 0.11636 4.9365E-05 0.076322 3.238E-05 0.19268 8.1745E-05 424.2497074806885 96.412 0.99465 100.32 99.91 100.9 3.9084 291 136 3 0 0 0 0.82752 1 22863 22863 9.3474 0 1 2806400 + 20841 19418 12819 12828 25078 25078 0.05572185499852367 LAPLHLRKRRN 11 Unmodified _LAPLHLRKRRN_ 0 0 0 REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 458.6245422363281 3 458.624866 1372.85277 0.19892 9.1231E-05 0.17467 8.011E-05 0.3736 0.00017134 458.6243828127776 101.49 0.20352 105.29 105.24 105.44 3.7942 39 29 2 0 0 0 0.66974 1 25042 25042 1.4551 0.12547 1 335700 + 20842 22386 12820 12829 25079 25079 0.18125740484788366 LAPLHLRKRRN 11 Unmodified _LAPLHLRKRRN_ 0 0 0 REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 458.624866 1372.85277 0.19892 9.1231E-05 0.17467 8.011E-05 0.3736 0.00017134 458.6243828127776 101.49 0.20352 105.29 105.24 105.44 3.7942 0.023991 0.0016394 NaN 1.4551 39 29 2 NaN NaN NaN NaN 0 NaN NaN 0 335700 + 20843 22386 12820 12829 0.18125740484788366 LAPLHLRKRRN 11 Unmodified _LAPLHLRKRRN_ 0 0 0 REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 458.624866 1372.85277 0.12492 5.729E-05 -1.5394 -0.00070601 -1.4145 -0.00064872 458.62397651112013 101.73 0.19077 105.25 105.22 105.41 3.5151 -0.01241 -0.00071896 NaN 1.4551 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 156910 + 20844 22386 12820 12829 0.18125740484788366 LAPLHLRKRRN 11 Unmodified _LAPLHLRKRRN_ 0 0 0 REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 458.624866 1372.85277 -0.088131 -4.0419E-05 -0.54243 -0.00024877 -0.63056 -0.00028919 458.62446509305676 101.76 0.15744 105.25 105.21 105.37 3.4873 -0.014658 0.00065274 NaN 1.4551 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 191750 + 20845 22386 12820 12829 0.18125740484788366 LAPLHLRKRRN 11 Unmodified _LAPLHLRKRRN_ 0 0 0 REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF REV__ENST00000451080.5_1_2:202672326-202741280:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 458.624866 1372.85277 0.17447 8.0015E-05 -1.2065 -0.00055334 -1.0321 -0.00047332 458.62418777612817 101.54 0.20223 105.26 105.23 105.43 3.7252 0.0030774 -0.00026096 NaN 1.4551 49 30 2 NaN NaN NaN NaN 0 NaN NaN 0 459170 + 20846 22386 12820 12829 0.18125740484788366 LAPLVGQLVR 10 Unmodified _LAPLVGQLVR_ 0 0 0 REV__ENSG00000267631|ENST00000301407|CGB1 REV__ENSG00000267631|ENST00000301407|CGB1 MSMS UPN48_class_I_Rep_2 6 533.3406982421875 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 90.136 1 93.883 93.383 94.383 3.7471 0 0 0 0.53105 1 21487 21487 6.7232 0 1 + 20847 18266 12821 12830 25080 25080 0.1408658801931324 LAPMLTFII 9 Unmodified _LAPMLTFII_ 0 0 0 L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.3060302734375 2 509.803914 1017.59328 0.30213 0.00015403 -0.18427 -9.394E-05 0.11786 6.0086E-05 509.8036675265968 80.247 0.59822 80.247 79.897 80.495 0 125 58 3 0 0 0 0.48643 2 18857 18857;18914 2.0598 0 1 462660 20848 10076 12822 12831 25081;25082 25081 0.08518233758763927 LAPMLTFII 9 Unmodified _LAPMLTFII_ 0 0 0 L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.8039245605469 2 509.803914 1017.59328 0.321 0.00016365 -0.37051 -0.00018889 -0.049509 -2.524E-05 509.8036371465231 76.91 1.1213 80.512 80.1 81.222 3.6016 145 105 2 0 0 0 0.48643 1 18185 18185 2.0598 0 1 324950 20849 10076 12822 12831 25083 25083 0.08518233758763927 LAPMLTFII 9 Unmodified _LAPMLTFII_ 0 0 0 L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.803914 1017.59328 0.28182 0.00014367 -0.10755 -5.4828E-05 0.17427 8.8843E-05 509.8037561806277 77.034 0.32952 80.303 80.051 80.38 3.269 0.090248 9.0268E-05 NaN 2.0598 61 38 2 NaN NaN NaN NaN 0 NaN NaN 0 126710 20850 10076 12822 12831 0.08518233758763927 LAPMLTFII 9 Unmodified _LAPMLTFII_ 0 0 0 L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense L1MA8_dup9779|chr17:30170199-30171093:-|1.1838314627664142|0.1459690670293333|3.02|151.0|69|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 509.803914 1017.59328 0.25918 0.00013213 0.10432 5.318E-05 0.36349 0.00018531 510.3060375138645 76.443 0.069221 79.953 79.895 79.965 3.5102 -0.25995 0.00030628 NaN 2.0598 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 26711 20851 10076 12822 12831 0.08518233758763927 LAPPAPTPPL 10 Unmodified _LAPPAPTPPL_ 0 0 0 ENST00000395042.1_1_20:62710648-62710726:-|nuORF ENST00000395042.1_1_20:62710648-62710726:-|nuORF ENST00000395042.1_1_20:62710648-62710726:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 487.28948974609375 2 487.289485 972.564418 0.35695 0.00017394 0.0080136 3.9049E-06 0.36496 0.00017784 487.28938269830746 57.449 0.69796 60.963 60.636 61.334 3.5142 99 55 2 0 0 0 0.56333 1 12509 12509 1.4819 0.79152 1 310370 20852 6550 12823 12832 25084 25084 0.07703832454001258 LAPPFHQW 8 Unmodified _LAPPFHQW_ 0 0 0 REV__MSTA-int_dup1303|chr7:105711266-105712909:-|1.2979253334884877|0.1965025104685211|2.72|151.0|3|1|sense REV__MSTA-int_dup1303|chr7:105711266-105712909:-|1.2979253334884877|0.1965025104685211|2.72|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 498.17083740234375 2 498.25852 994.502486 NaN NaN NaN NaN NaN NaN NaN 74.344 1 74.344 73.844 74.844 0 0 0 0 0.40738 1 17248 17248 0.79363 0 1 + 20853 31861 12824 12833 25085 25085 0.005015258255184563 LAPPIVVYF 9 Unmodified _LAPPIVVYF_ 0 0 0 REV__nc|ENSG00000273085|Q8NGJ3|OR52E1 REV__nc|ENSG00000273085|Q8NGJ3|OR52E1 MSMS UPN48_class_I_Rep_3 7 509.803466796875 2 509.802229 1017.5899 NaN NaN NaN NaN NaN NaN NaN 78.525 1 82.146 81.646 82.646 3.6216 0 0 0 0.39326 1 18590 18590 2.3027 0.4585 1 + 20854 32121 12825 12834 25086 25086 0.08181306976416636 LAPPLLLLL 9 Unmodified _LAPPLLLLL_ 0 0 0 REV__ENSG00000161610|ENST00000293330|HCRT REV__ENSG00000161610|ENST00000293330|HCRT MULTI-SECPEP UPN47_class_I_Rep_3 4 481.3371887207031 2 481.836071 961.65759 0.10077 4.8557E-05 0.60137 0.00028976 0.70214 0.00033832 481.83471259800257 68.23 0.10687 71.427 71.402 71.509 3.1977 8 5 2 0 0 0 0.12422 1 16574 16574 2.3027 0 1 29837 + 20855 19907 12826 12835 25087 25087 0.17522756907226267 LAPQKPAPPL 10 Unmodified _LAPQKPAPPL_ 0 0 0 ENST00000463464.5_1_7:44156730-44161694:-|nuORF;ENSG00000106628|ENST00000610533|POLD2 ENST00000463464.5_1_7:44156730-44161694:-|nuORF ENST00000463464.5_1_7:44156730-44161694:-|nuORF MSMS UPN48_class_I_Rep_3 7 516.3148193359375 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 92.601 1 96.479 95.979 96.979 3.8782 0 0 0 0.53105 1 21952 21952 1.6526 0.32309 1 20856 1796 12827 12836 25088 25088 0.10343210236646883 LAPRAIRTRY 10 Unmodified _LAPRAIRTRY_ 0 0 0 ENST00000467204.1_1_1:155252337-155256975:+|nuORF;ENST00000496230.5_1_1:155247534-155253965:+|nuORF;ENSG00000143630|ENST00000368358|HCN3 ENST00000467204.1_1_1:155252337-155256975:+|nuORF ENST00000467204.1_1_1:155252337-155256975:+|nuORF MSMS UPN46_class_I_Rep_3 1 406.2489318847656 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 87.194 1 87.194 86.694 87.694 0 0 0 0 0.53105 1 20878 20878 0.77653 0 1 20857 3315 12828 12837 25089 25089 0.12079296028127828 LAPVSFWVY 9 Unmodified _LAPVSFWVY_ 0 0 0 REV__L1PA15_dup65|chr1:50811325-50813233:+|1.3745330721892313|0.0125927340233601|6.77|150.0|84|2|anti-sense REV__L1PA15_dup65|chr1:50811325-50813233:+|1.3745330721892313|0.0125927340233601|6.77|150.0|84|2|anti-sense MSMS UPN48_class_I_Rep_1 5 541.2877807617188 2 541.289485 1080.56442 NaN NaN NaN NaN NaN NaN NaN 52.344 1 55.867 55.367 56.367 3.5227 0 0 0 0.36505 1 10877 10877 7.2892 1.0834 1 + 20858 29269 12829 12838 25090 25090 0.027358324540045942 LAPVVWVF 8 Unmodified _LAPVVWVF_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS UPN48_class_I_Rep_1 5 465.7772216796875 2 465.776014 929.537475 NaN NaN NaN NaN NaN NaN NaN 73.133 1 76.614 76.114 77.114 3.4812 0 0 0 0.40581 1 17213 17213 2.8892 0.58649 1 + 20859 19922 12830 12839 25091 25091 0.06988768633470954 LAPVVWVF 8 Unmodified _LAPVVWVF_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS UPN48_class_I_Rep_3 7 465.7771911621094 2 465.776014 929.537475 NaN NaN NaN NaN NaN NaN NaN 84.228 1 87.956 87.456 88.456 3.7281 0 0 0 0.40581 1 19988 19988 2.8892 2.0956 1 + 20860 19922 12830 12839 25092 25092 0.06988768633470954 LAQDKKESVK 10 Unmodified _LAQDKKESVK_ 0 0 0 REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 573.3302001953125 2 573.32987 1144.64519 0.40723 0.00023348 -0.15268 -8.7534E-05 0.25455 0.00014594 573.3295611011903 89.519 0.48203 93.144 93.084 93.566 3.6255 77 53 2 0 0 0 0.55148 1 21552 21552 5.2969 0 1 283130 + 20861 20202 12831 12840 25093 25093 0.0786506870622361 LAQDKKESVK 10 Unmodified _LAQDKKESVK_ 0 0 0 REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 573.3294677734375 2 573.32987 1144.64519 0.48218 0.00027645 -0.43163 -0.00024747 0.050552 2.8983E-05 573.3294417393305 89.403 1.1117 93.141 92.578 93.69 3.7379 236 133 2 0 0 0 0.55148 1 21358 21358 5.2969 0 1 256950 + 20862 20202 12831 12840 25094 25094 0.0786506870622361 LAQDKKESVK 10 Unmodified _LAQDKKESVK_ 0 0 0 REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 573.8316040039062 2 573.32987 1144.64519 0.48695 0.00027918 -0.37356 -0.00021417 0.11339 6.5008E-05 573.3295624689337 88.594 0.40332 92.404 92.099 92.502 3.8104 73 50 2 0 0 0 0.56078 1 21022 21022 3.2813 0 1 170810 + 20863 20202 12831 12840 25095 25095 0.0786506870622361 LAQDKKESVK 10 Unmodified _LAQDKKESVK_ 0 0 0 REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 573.8317260742188 2 573.32987 1144.64519 0.48643 0.00027888 -0.29732 -0.00017046 0.18911 0.00010842 573.3294527589702 88.867 0.30171 92.696 92.521 92.823 3.8293 67 41 2 0 0 0 0.55148 1 21102 21102 5.2969 0 1 133290 + 20864 20202 12831 12840 25096 25096 0.0786506870622361 LAQDKKESVK 10 Unmodified _LAQDKKESVK_ 0 0 0 REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant REV__MAP1A|p.L1905Wfs*70|1|0.02|ENSG00000166963|chr15:43527181-43527181|C/-|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_3 4 2 573.32987 1144.64519 0.49367 0.00028303 0.25211 0.00014454 0.74577 0.00042757 573.8319790791601 89.53 0.019806 92.923 92.912 92.932 3.3931 0.086257 0.00071273 NaN 5.2969 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 30935 + 20865 20202 12831 12840 0.0786506870622361 LAQDNQPPFY 10 Unmodified _LAQDNQPPFY_ 0 0 0 L1MB3_dup9601|chrX:124004299-124004696:-|1.4582211127783895|0.0109077732149592|7.06|151.0|16|1|anti-sense L1MB3_dup9601|chrX:124004299-124004696:-|1.4582211127783895|0.0109077732149592|7.06|151.0|16|1|anti-sense L1MB3_dup9601|chrX:124004299-124004696:-|1.4582211127783895|0.0109077732149592|7.06|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_3 7 596.771240234375 2 596.785296 1191.55604 NaN NaN NaN NaN NaN NaN NaN 71.049 1 74.567 74.067 75.067 3.5185 0 0 0 0.53105 1 16471 16471 3.5965 1.019 1 20866 10472 12832 12841 25097 25097 -0.032077662532856266 LAQDSVKPV 9 Unmodified _LAQDSVKPV_ 0 0 0 REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1 REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1 MULTI-MSMS UPN46_class_I_Rep_3 1 478.7737731933594 2 478.7742 955.533846 0.23802 0.00011396 -0.35521 -0.00017007 -0.11719 -5.6109E-05 478.77387318244394 44.345 0.76175 44.345 43.85 44.611 0 137 72 3 0 0 0 0.28552 1 8848 8848 14.838 0 1 611230 + 20867 20835 12833 12842 25098 25098 0.0543005406894963 LAQLDERYN 9 Unmodified _LAQLDERYN_ 0 0 0 REV__ENSG00000047662|ENST00000265018|FAM184B REV__ENSG00000047662|ENST00000265018|FAM184B MULTI-MSMS UPN46_class_I_Rep_3 1 561.2824096679688 2 561.28292 1120.55129 -0.0019953 -1.1199E-06 -0.17277 -9.6972E-05 -0.17476 -9.8092E-05 561.2827239180072 21.781 0.28471 21.781 21.652 21.937 0 43 32 2 0 0 0 0.50088 1 2466 2466 0.52476 0 1 41085 + 20868 17665 12834 12843 25099 25099 -0.004166503960504997 LAQNLAAWVE 10 Unmodified _LAQNLAAWVE_ 0 0 0 REV__ENSG00000130518|ENST00000392413|IQCN REV__ENSG00000130518|ENST00000392413|IQCN MSMS UPN48_class_I_Rep_1 5 557.797607421875 2 557.798206 1113.58186 NaN NaN NaN NaN NaN NaN NaN 58.27 1 61.757 61.257 62.257 3.487 0 0 0 0.53105 1 12699 12699 3.2813 0 1 + 20869 18940 12835 12844 25100 25100 0.02961127988987755 LAQRGGML 8 Unmodified _LAQRGGML_ 0 0 0 ENST00000524945.5_1_8:70745308-70745410:-|nuORF;ENST00000532388.5_1_8:70745308-70746084:-|nuORF;ENST00000531422.1_1_8:70745308-70745724:-|nuORF;ENST00000524703.1_1_8:70745308-70746415:-|nuORF;ENST00000260126.8_1_8:70745308-70747283:-|nuORF ENST00000524945.5_1_8:70745308-70745410:-|nuORF ENST00000524945.5_1_8:70745308-70745410:-|nuORF MSMS UPN46_class_I_Rep_3 1 423.6271057128906 2 423.23673 844.458907 NaN NaN NaN NaN NaN NaN NaN 103.99 1 103.99 103.49 104.49 0 0 0 0 0.40738 1 25386 25386 0.79363 0 1 20870 5946 12836 12845 25101 25101 0.030455930567541145 LAQYTEKHE 9 Unmodified _LAQYTEKHE_ 0 0 0 REV__chr1:97679182-97680698|42|10.29|0.34|4.93|-|0|TE_info:ERV3-16A3_I-int,ERV3-16A3_I-int_dup185,ERVL,LTR,donor,+,97680698,97680969|DPYD,None|1 REV__chr1:97679182-97680698|42|10.29|0.34|4.93|-|0|TE_info:ERV3-16A3_I-int,ERV3-16A3_I-int_dup185,ERVL,LTR,donor,+,97680698,97680969|DPYD,None|1 MULTI-MSMS UPN47_class_I_Rep_2 3 559.7770385742188 2 559.77747 1117.54039 0.047399 2.6533E-05 0.060593 3.3919E-05 0.10799 6.0452E-05 559.7774472240612 22.471 0.43106 25.916 25.671 26.102 3.4447 59 40 2 0 0 0 0.49187 1 2678 2678 1.4819 0 1 49684 + 20871 17421 12837 12846 25102 25102 -0.013680527703172629 LARADGHY 8 Unmodified _LARADGHY_ 0 0 0 REV__DXO|p.Y69C|1|0.39|ENSG00000204348|chr6:31971470-31971470|T/C|missense_variant REV__DXO|p.Y69C|1|0.39|ENSG00000204348|chr6:31971470-31971470|T/C|missense_variant MSMS UPN47_class_I_Rep_3 4 451.72711181640625 2 451.727584 901.440614 NaN NaN NaN NaN NaN NaN NaN 19.551 1 22.903 22.403 23.403 3.3514 0 0 0 0.40581 1 1849 1849 2.8892 0 1 + 20872 17505 12838 12847 25103 25103 -0.014048255936245369 LARLAKKKRRE 11 Unmodified _LARLAKKKRRE_ 0 0 0 L1MA3_dup7707|chr15:44702090-44702993:-|1.3777825920390792|0.0350238850284418|5.3|151.0|7|1|sense L1MA3_dup7707|chr15:44702090-44702993:-|1.3777825920390792|0.0350238850284418|5.3|151.0|7|1|sense L1MA3_dup7707|chr15:44702090-44702993:-|1.3777825920390792|0.0350238850284418|5.3|151.0|7|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 456.3006591796875 3 456.968522 1367.88374 0.089265 4.0791E-05 0.38909 0.0001778 0.47836 0.00021859 456.96822424504546 39.374 0.063095 43.03 42.999 43.063 3.6557 7 5 2 0 0 0 22.551 1 6875 6875 0.50596 0 1 29384 20873 9624 12839 12848 25104 25104 0.2145089379903311 LARLILNSRPQ 11 Unmodified _LARLILNSRPQ_ 0 0 0 AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|24|3|anti-sense AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|24|3|anti-sense AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|24|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 427.30267333984375 3 427.598094 1279.77245 0.012695 5.4284E-06 1.3799 0.00059005 1.3926 0.00059548 427.598726674169 62.26 0.19952 65.628 65.498 65.697 3.3681 20 13 2 0 0 0 22.551 1 14675 14675 1.3296 0 1 96657 20874 266 12840 12849 25105 25105 0.14375834371094243 LARLILNSRPQ 11 Unmodified _LARLILNSRPQ_ 0 0 0 AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|24|3|anti-sense AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|24|3|anti-sense AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|24|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 427.598094 1279.77245 -0.5563 -0.00023787 2.2595 0.00096616 1.7032 0.00072829 427.59900837274546 62.335 0.62675 65.501 64.948 65.575 3.1667 -0.063294 0.00029868 NaN 1.3296 69 45 2 NaN NaN NaN NaN 0 NaN NaN 0 112580 20875 266 12840 12849 0.14375834371094243 LARLKWTKKFR 11 Unmodified _LARLKWTKKFR_ 0 0 0 REV__ENSG00000160712|ENST00000368485|IL6R REV__ENSG00000160712|ENST00000368485|IL6R MULTI-SECPEP UPN46_class_I_Rep_3 1 483.2664489746094 3 482.973384 1445.89832 0.19217 9.2814E-05 1.6924 0.0008174 1.8846 0.00091021 483.3085049014555 55.645 0.072632 55.645 55.602 55.675 0 10 9 2 0 0 0 22.551 1 12100 12100 0.094841 0 1 222580 + 20876 19890 12841 12850 25106 25106 0.1932096594714494 LARLSKFE 8 Unmodified _LARLSKFE_ 0 0 0 nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE nc|ENSG00000274391|P56180-2|TPTE nc|ENSG00000274391|P56180-2|TPTE MSMS UPN48_class_I_Rep_1 5 482.2850036621094 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 35.867 1 39.377 38.877 39.877 3.5101 0 0 0 0.40625 1 5924 5924 2.3027 0 1 20877 5821 12842 12851 25107 25107 0.07214064168465484 LARLWWIY 8 Unmodified _LARLWWIY_ 0 0 0 REV__L1PA13_dup8105|chr17:6908654-6909984:-|1.2305421966269443|0.1187125576004822|3.37|151.0|49|2|anti-sense REV__L1PA13_dup8105|chr17:6908654-6909984:-|1.2305421966269443|0.1187125576004822|3.37|151.0|49|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.8051147460938 2 560.818744 1119.62294 NaN NaN NaN NaN NaN NaN NaN 77.029 1 80.36 79.86 80.86 3.3315 0 0 0 0.40604 1 19088 19088 2.5775 0 1 + 20878 29130 12843 12852 25108 25108 0.06790933819138445 LARMIALI 8 Unmodified _LARMIALI_ 0 0 0 REV__ENSG00000170807|ENST00000458573|LMOD2 REV__ENSG00000170807|ENST00000458573|LMOD2 MSMS UPN47_class_I_Rep_2 3 450.7815856933594 2 450.788598 899.562644 NaN NaN NaN NaN NaN NaN NaN 92.642 1 96.107 95.607 96.607 3.4652 0 0 0 0.39408 1 22893 22893 10.183 0 1 + 20879 20380 12844 12853 25109 25109 0.10884500164388555 LARNSRIL 8 Unmodified _LARNSRIL_ 0 0 0 ENST00000529618.5_2_11:58874728-58891664:+|nuORF ENST00000529618.5_2_11:58874728-58891664:+|nuORF ENST00000529618.5_2_11:58874728-58891664:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 51.418 1 55.011 54.511 55.511 3.5932 0 0 0 0.40581 1 11360 11360 2.8892 0 1 20880 7286 12845 12854 25110 25110 0.10392288636899139 LARNSRIL 8 Unmodified _LARNSRIL_ 0 0 0 ENST00000529618.5_2_11:58874728-58891664:+|nuORF ENST00000529618.5_2_11:58874728-58891664:+|nuORF ENST00000529618.5_2_11:58874728-58891664:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.7955322265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 51.819 1 55.152 54.652 55.652 3.3332 0 0 0 0.40581 1 11511 11511 2.8892 0 1 20881 7286 12845 12854 25111 25111 0.10392288636899139 LARPLVWH 8 Unmodified _LARPLVWH_ 0 0 0 REV__L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|188|3|anti-sense REV__L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|188|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.295436 990.57632 NaN NaN NaN NaN NaN NaN NaN 77.219 1 77.219 76.719 77.719 0 0 0 0 0.40738 1 18042 18042 0.79363 0 1 + 20882 24916 12846 12855 25112 25112 0.0806549398784 LARQRHLRTHH 11 Unmodified _LARQRHLRTHH_ 0 0 0 REV__nc|ENSG00000162894|O60667-2|FCMR REV__nc|ENSG00000162894|O60667-2|FCMR MULTI-MSMS UPN46_class_I_Rep_3 1 475.6083984375 3 475.607987 1423.80213 0.19425 9.2387E-05 0.63896 0.0003039 0.83321 0.00039628 475.6082594123242 51.243 0.55171 51.243 50.962 51.513 0 111 59 3 0 0 0 0.54468 3 10874 10827;10874;10912 6.6235 6.6235 1 509000 + 20883 19950 12847 12856 25113;25114;25115 25114 0.10718211159769453 LARRGPAA 8 Unmodified _LARRGPAA_ 0 0 0 REV__ENST00000371222.3_1_1:59249463-59249556:-|nuORF REV__ENST00000371222.3_1_1:59249463-59249556:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.24847412109375 2 406.248486 810.48242 0.062263 2.5294E-05 0.14293 5.8063E-05 0.20519 8.3358E-05 406.24851456226816 85.106 0.15091 85.106 84.978 85.129 0 24 14 2 0 0 0 0.82752 1 20272 20272 0.79363 0 1 278760 + 20884 21960 12848 12857 25116 25116 0.06959774885558545 LARRGPAA 8 Unmodified _LARRGPAA_ 0 0 0 REV__ENST00000371222.3_1_1:59249463-59249556:-|nuORF REV__ENST00000371222.3_1_1:59249463-59249556:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 406.248486 810.48242 0.062263 2.5294E-05 0.14293 5.8063E-05 0.20519 8.3358E-05 406.24851456226816 85.106 0.15091 85.106 84.978 85.129 0 0.017845 -0.00014097 NaN 0.79363 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 278760 + 20885 21960 12848 12857 0.06959774885558545 LARRGQKY 8 Unmodified _LARRGQKY_ 0 0 0 HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|1|1|sense HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|1|1|sense HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 62.412 1 62.412 61.912 62.912 0 0 0 0 0.40364 1 13950 13950 5.7604 0 1 20886 7795 12849 12858 25117 25117 0.0766340449413292 LARRKQFYR 9 Unmodified _LARRKQFYR_ 0 0 0 REV__ENSG00000163053|ENST00000295190|SLC16A14 REV__ENSG00000163053|ENST00000295190|SLC16A14 MSMS UPN48_class_I_Rep_1 5 619.3673095703125 2 619.367456 1236.72036 NaN NaN NaN NaN NaN NaN NaN 98.999 1 102.61 102.11 103.11 3.6065 0 0 0 0.4007 1 23897 23897 0.52476 0 1 + 20887 19958 12850 12859 25118 25118 0.11146715747986491 LARRRRAPY 9 Unmodified _LARRRRAPY_ 0 0 0 REV__ENSG00000144655|ENST00000273153|CSRNP1 REV__ENSG00000144655|ENST00000273153|CSRNP1 MULTI-SECPEP UPN46_class_I_Rep_3 1 579.8509521484375 2 579.851973 1157.68939 0.37746 0.00021887 -1.0378 -0.00060177 -0.66033 -0.0003829 580.3527079133169 35.763 0.47899 35.763 35.61 36.089 0 48 34 2 0 0 0 0.12527 1 6647 6647 0.6015 0 1 80534 + 20888 19489 12851 12860 25119 25119 0.11685562433740415 LARRVYFCF 9 Unmodified _LARRVYFCF_ 0 0 0 REV__HAL1b_dup4640|chr16:68127705-68128085:-|1.1299834884929354|0.0232242317707786|5.6|151.0|30|3|anti-sense REV__HAL1b_dup4640|chr16:68127705-68128085:-|1.1299834884929354|0.0232242317707786|5.6|151.0|30|3|anti-sense MSMS UPN47_class_I_Rep_2 3 587.8124389648438 2 587.813136 1173.61172 NaN NaN NaN NaN NaN NaN NaN 26.264 1 29.759 29.259 30.259 3.4945 0 0 0 0.40038 1 3773 3773 0.6015 0.076735 1 + 20889 23458 12852 12861 25120 25120 0.03185788453333771 LARVIEVSV 9 Unmodified _LARVIEVSV_ 0 0 0 REV__L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|171|2|anti-sense REV__L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|171|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.3055725097656 2 493.305667 984.596781 0.1468 7.2417E-05 0.63869 0.00031507 0.78549 0.00038749 493.30558481221146 63.677 0.51953 67.033 66.805 67.325 3.3557 86 44 3 0 0 0 0.44742 2 15058 15058;15133 5.2969 0 1 148550 + 20890 29285 12853 12862 25121;25122 25121 0.10386619857013102 LARVIEVSV 9 Unmodified _LARVIEVSV_ 0 0 0 REV__L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|171|2|anti-sense REV__L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|171|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.30584716796875 2 493.305667 984.596781 0.19817 9.776E-05 1.3707 0.00067619 1.5689 0.00077395 493.30568202408597 63.995 0.53197 67.169 67.015 67.547 3.1741 61 38 3 0 0 0 0.40701 1 15251 15251 7.609 0 1 95045 + 20891 29285 12853 12862 25123 25123 0.10386619857013102 LASFTQHVF 9 Unmodified _LASFTQHVF_ 0 0 0 L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|39|1|anti-sense;L1MB8_dup1054|chr1:246575245-246575746:+|1.0199881587220836|0.0131926893468986|6.27|151.0|26|1|anti-sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|39|1|anti-sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|39|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.2745971679688 2 525.274367 1048.53418 0.49933 0.00026229 0.0070852 3.7217E-06 0.50642 0.00026601 525.2745196977371 70.224 0.54219 73.737 73.466 74.008 3.5128 55 47 2 0 0 0 0.35081 1 16244 16244 10.824 0 1 69731 20892 10861 12854 12863 25124 25124 0.011854737888143063 LASFTQHVF 9 Unmodified _LASFTQHVF_ 0 0 0 L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|39|1|anti-sense;L1MB8_dup1054|chr1:246575245-246575746:+|1.0199881587220836|0.0131926893468986|6.27|151.0|26|1|anti-sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|39|1|anti-sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|39|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 525.274367 1048.53418 0.33991 0.00017855 0.072414 3.8037E-05 0.41232 0.00021658 525.2743622197355 70.46 0.40795 73.92 73.667 74.075 3.4598 0.091439 3.1781E-05 NaN 10.824 39 33 2 NaN NaN NaN NaN 0 NaN NaN 0 89581 20893 10861 12854 12863 0.011854737888143063 LASLRWLK 8 Unmodified _LASLRWLK_ 0 0 0 nc|ENSG00000114439|Q8WY36-3|BBX nc|ENSG00000114439|Q8WY36-3|BBX nc|ENSG00000114439|Q8WY36-3|BBX MSMS UPN46_class_I_Rep_3 1 493.79766845703125 2 493.810919 985.607286 NaN NaN NaN NaN NaN NaN NaN 61.127 1 61.127 60.627 61.627 0 0 0 0 0.38221 1 13588 13588 14.582 0 1 20894 16666 12855 12864 25125 25125 0.11390647302084744 LASLWSFSI 9 Unmodified _LASLWSFSI_ 0 0 0 REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|267|2|anti-sense REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|267|2|anti-sense MSMS UPN48_class_I_Rep_1 5 512.2772216796875 2 512.279118 1022.54368 NaN NaN NaN NaN NaN NaN NaN 53.711 1 57.226 56.726 57.726 3.5143 0 0 0 0.36505 1 11301 11301 7.2892 0 1 + 20895 30375 12856 12865 25126 25126 0.03331242074330021 LASPLRISTPI 11 Unmodified _LASPLRISTPI_ 0 0 0 REV__L1ME1_dup1478|chr1:148131744-148132112:-|1.0268671835105752|0.1540536908605418|2.74|151.0|19|1|anti-sense REV__L1ME1_dup1478|chr1:148131744-148132112:-|1.0268671835105752|0.1540536908605418|2.74|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_1 5 584.3563232421875 2 584.358431 1166.70231 NaN NaN NaN NaN NaN NaN NaN 82.807 1 86.394 85.894 86.894 3.5871 0 0 0 0.38417 1 19786 19786 1.1933 0 1 + 20896 27609 12857 12866 25127 25127 0.1256253598260173 LASTNGLYLY 10 Unmodified _LASTNGLYLY_ 0 0 0 L1MC4_dup19255|chr14:44965035-44965869:-|1.2844856692523572|0.0220623507281523|5.86|151.0|64|3|anti-sense L1MC4_dup19255|chr14:44965035-44965869:-|1.2844856692523572|0.0220623507281523|5.86|151.0|64|3|anti-sense L1MC4_dup19255|chr14:44965035-44965869:-|1.2844856692523572|0.0220623507281523|5.86|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.79248046875 2 557.792589 1113.57063 0.36762 0.00020506 -0.099006 -5.5225E-05 0.26862 0.00014983 557.7924915978991 65.773 0.98694 69.131 68.684 69.671 3.3576 149 60 4 0 0 0 0.53188 1 15614 15614 7.9102 0 1 759830 20897 11434 12858 12867 25128 25128 0.01838305894852965 LASVKRPRREA 11 Unmodified _LASVKRPRREA_ 0 0 0 ENST00000557803.5_1_14:102802004-102808513:+|nuORF;nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839 ENST00000557803.5_1_14:102802004-102808513:+|nuORF ENST00000557803.5_1_14:102802004-102808513:+|nuORF MSMS UPN48_class_I_Rep_2 6 641.8864135742188 2 641.888752 1281.76295 NaN NaN NaN NaN NaN NaN NaN 94.339 1 98.115 97.615 98.615 3.7761 0 0 0 0.38417 1 22431 22431 2.2828 0.43854 1 20898 812 12859 12868 25129 25129 0.13334066085576524 LATGSGIVII 10 Unmodified _LATGSGIVII_ 0 0 0 nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A MULTI-MSMS UPN47_class_I_Rep_2 3 472.294677734375 2 472.294768 942.574983 0.14527 6.8609E-05 -0.19764 -9.3342E-05 -0.052368 -2.4733E-05 472.294552029013 51.402 1.0795 54.741 54.316 55.396 3.3386 151 54 4 0 0 0 0.30285 1 11492 11492 32.305 0 1 882990 20899 4323 12860 12869 25130 25130 0.10139815108436778 LATLAVVFH 9 Unmodified _LATLAVVFH_ 0 0 0 ENST00000342988.7_1_18:48556933-48573412:+|nuORF ENST00000342988.7_1_18:48556933-48573412:+|nuORF ENST00000342988.7_1_18:48556933-48573412:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 485.2896728515625 2 485.789653 969.564752 0.35598 0.00017293 -0.17875 -8.6834E-05 0.17724 8.6099E-05 485.79016508774345 57.115 0.15371 60.63 60.596 60.75 3.5142 15 10 2 0 0 0 0.12235 1 12356 12356 4.756 0.42677 1 72367 20900 6241 12861 12870 25131 25131 0.07875252173846548 LATRGLCEV 9 Unmodified _LATRGLCEV_ 0 0 0 HERVIP10FH-int_dup241|chr10:29436720-29438848:-|1.871164615685307|0.3687814641937663|2.34|151.0|89|1|anti-sense HERVIP10FH-int_dup241|chr10:29436720-29438848:-|1.871164615685307|0.3687814641937663|2.34|151.0|89|1|anti-sense HERVIP10FH-int_dup241|chr10:29436720-29438848:-|1.871164615685307|0.3687814641937663|2.34|151.0|89|1|anti-sense MSMS UPN47_class_I_Rep_1 2 481.2769470214844 2 481.260402 960.506251 NaN NaN NaN NaN NaN NaN NaN 67.836 1 71.201 70.701 71.701 3.3646 0 0 0 0.35339 1 16338 16338 7.9102 1.5561 1 20901 8225 12862 12871 25132 25132 0.024418275370635456 LATVILSCI 9 Unmodified _LATVILSCI_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|32|1|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_2 3 466.7777404785156 2 466.777896 931.54124 NaN NaN NaN NaN NaN NaN NaN 55.788 1 59.098 58.598 59.598 3.3102 0 0 0 0.39518 1 12719 12719 1.8442 0 1 + 20902 24188 12863 12872 25133 25133 0.07273070345001997 LATVKKQL 8 Unmodified _LATVKKQL_ 0 0 0 nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;ENSG00000253797|ENST00000521776|UTP14C nc|ENSG00000156697|Q9BVJ6-3|UTP14A nc|ENSG00000156697|Q9BVJ6-3|UTP14A MSMS UPN47_class_I_Rep_1 2 450.79693603515625 2 450.797478 899.580402 NaN NaN NaN NaN NaN NaN NaN 30.146 1 33.891 33.391 34.391 3.7449 0 0 0 0.40643 1 4889 4889 2.0598 0 1 20903 3739 12864 12873 25134 25134 0.12659538690888894 LAVDFLHL 8 Unmodified _LAVDFLHL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MSMS UPN47_class_I_Rep_2 3 464.27880859375 2 464.268553 926.522553 NaN NaN NaN NaN NaN NaN NaN 45.488 1 48.841 48.341 49.341 3.3534 0 0 0 0.39408 1 9590 9590 10.183 2.2732 1 + 20904 20973 12865 12874 25135 25135 0.056352767654857416 LAVEQNKV 8 Unmodified _LAVEQNKV_ 0 0 0 ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|4|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|8|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|1|intron;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|3|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|11|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|5|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|6|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|9|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|7|intron;ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|2|intron ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron MULTI-MSMS UPN47_class_I_Rep_3 4 450.76068115234375 2 450.761092 899.507631 -0.83502 -0.00037639 0.38985 0.00017573 -0.44516 -0.00020066 450.7610105649418 31.901 0.75848 35.2 34.78 35.538 3.2991 91 59 2 0 0 0 0.82752 1 5454 5454 10.824 0 1 90195 20905 4022 12866 12875 25136 25136 0.05385784897475787 LAVHPSGVAL 10 Unmodified _LAVHPSGVAL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS UPN46_class_I_Rep_3 1 482.2840881347656 2 482.284734 962.554916 0.20573 9.9219E-05 -0.16482 -7.9492E-05 0.040903 1.9727E-05 482.2845250331493 52.6 0.45874 52.6 52.34 52.799 0 85 54 2 0 0 0 0.27684 1 11236 11236 36.127 7.0454 1 441250 20906 5195 12867 12876 25137 25137 0.07214064168476853 LAVHPSGVAL 10 Unmodified _LAVHPSGVAL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MSMS UPN46_class_I_Rep_3 1 482.28485107421875 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 52.717 1 52.717 52.217 53.217 0 0 0 0 0.53105 1 11288 11288 30.637 7.9003 1 20907 5195 12867 12876 25138 25138 0.07214064168476853 LAVLDLFH 8 Unmodified _LAVLDLFH_ 0 0 0 L1MA3_dup6476|chr11:75932584-75934656:+|1.4073099160129756|0.0214932503551693|6.03|151.0|84|1|anti-sense L1MA3_dup6476|chr11:75932584-75934656:+|1.4073099160129756|0.0214932503551693|6.03|151.0|84|1|anti-sense L1MA3_dup6476|chr11:75932584-75934656:+|1.4073099160129756|0.0214932503551693|6.03|151.0|84|1|anti-sense MSMS UPN47_class_I_Rep_3 4 464.27886962890625 2 464.268553 926.522553 NaN NaN NaN NaN NaN NaN NaN 45.339 1 48.583 48.083 49.083 3.2441 0 0 0 0.39167 1 9597 9597 11.114 0 1 20908 9604 12868 12877 25139 25139 0.05635276765474373 LAVPPKVKHRI 11 Unmodified _LAVPPKVKHRI_ 0 0 0 L1MB7_dup17773|chr14:102853857-102854508:-|1.2084060696683214|0.0091036182759445|7.05|151.0|2|1|sense L1MB7_dup17773|chr14:102853857-102854508:-|1.2084060696683214|0.0091036182759445|7.05|151.0|2|1|sense L1MB7_dup17773|chr14:102853857-102854508:-|1.2084060696683214|0.0091036182759445|7.05|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 629.41064453125 2 629.411332 1256.80811 NaN NaN NaN NaN NaN NaN NaN 113.77 1 117.28 116.78 117.78 3.5109 0 0 0 0.38417 1 27683 27683 0.30703 0.30703 1 20909 10749 12869 12878 25140 25140 0.18997916618741328 LAVREAIHA 9 Unmodified _LAVREAIHA_ 0 0 0 ENSG00000100726|ENST00000262319|TELO2 ENSG00000100726|ENST00000262319|TELO2 ENSG00000100726|ENST00000262319|TELO2 MSMS UPN47_class_I_Rep_2 3 490.2868347167969 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 31.568 1 35.037 34.537 35.537 3.4691 0 0 0 0.39598 1 5360 5360 1.6526 0 1 20910 1529 12870 12879 25141 25141 0.07092582399991443 LAVRRIEP 8 Unmodified _LAVRRIEP_ 0 0 0 REV__ENSG00000134815|ENST00000328771|DHX34 REV__ENSG00000134815|ENST00000328771|DHX34 MSMS UPN47_class_I_Rep_2 3 477.29644775390625 2 477.298176 952.581799 NaN NaN NaN NaN NaN NaN NaN 65.088 1 68.344 67.844 68.844 3.2556 0 0 0 0.40581 1 15549 15549 2.8892 0 1 + 20911 19112 12871 12880 25142 25142 0.10361172779653316 LAVRVKNKK 9 Unmodified _LAVRVKNKK_ 0 0 0 REV__L1MEd_dup15037|chr11:43484161-43484773:+|2.0780294106471104|0.1729932994575386|3.59|150.0|23|3|sense REV__L1MEd_dup15037|chr11:43484161-43484773:+|2.0780294106471104|0.1729932994575386|3.59|150.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 528.3556518554688 2 528.356025 1054.6975 NaN NaN NaN NaN NaN NaN NaN 30.67 1 34.415 33.915 34.915 3.7449 0 0 0 0.39518 1 5044 5044 1.8442 0 1 + 20912 28531 12872 12881 25143 25143 0.17233696630501072 LAVSPHSSLP 10 Unmodified _LAVSPHSSLP_ 0 0 0 L1MB5_dup660|chr2:24510847-24511920:-|3.144309944004784|0.0411714670033798|6.25|151.0|61|3|anti-sense L1MB5_dup660|chr2:24510847-24511920:-|3.144309944004784|0.0411714670033798|6.25|151.0|61|3|anti-sense L1MB5_dup660|chr2:24510847-24511920:-|3.144309944004784|0.0411714670033798|6.25|151.0|61|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 504.8092346191406 2 504.279649 1006.54475 0.28584 0.00014414 4.2382 0.0021372 4.524 0.0022814 504.2819687584766 44.784 0.28193 44.784 44.671 44.953 0 31 26 2 0 0 0 0.84575 1 9039 9039 3.2813 0 1 227020 20913 10636 12873 12882 25144 25144 0.04173456443231771 LAVSRAIAI 9 Unmodified _LAVSRAIAI_ 0 0 0 ENST00000484588.1_1_22:22279345-22285612:-|nuORF ENST00000484588.1_1_22:22279345-22285612:-|nuORF ENST00000484588.1_1_22:22279345-22285612:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 457.29510498046875 2 457.295102 912.575651 0.15351 7.02E-05 0.074883 3.4244E-05 0.22839 0.00010444 457.2950347281874 64.057 1.2756 67.515 66.974 68.249 3.4578 213 97 4 0 0 0 0.047711 4 14512 14356;14394;14434;14512 49.933 13.806 1 1987100 20914 7022 12874 12883 25145;25146;25147;25148 25148 0.11586654548113984 LAVSRAIAI 9 Unmodified _LAVSRAIAI_ 0 0 0 ENST00000484588.1_1_22:22279345-22285612:-|nuORF ENST00000484588.1_1_22:22279345-22285612:-|nuORF ENST00000484588.1_1_22:22279345-22285612:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 457.29498291015625 2 457.295102 912.575651 0.21075 9.6376E-05 -0.010152 -4.6423E-06 0.2006 9.1734E-05 457.2949893668777 63.865 0.99744 67.339 66.866 67.863 3.4743 218 75 4 0 0 0 0.061943 4 14381 14344;14381;14425;14468 43.858 7.8141 1 1512200 20915 7022 12874 12883 25149;25150;25151;25152 25150 0.11586654548113984 LAVSRAIAI 9 Unmodified _LAVSRAIAI_ 0 0 0 ENST00000484588.1_1_22:22279345-22285612:-|nuORF ENST00000484588.1_1_22:22279345-22285612:-|nuORF ENST00000484588.1_1_22:22279345-22285612:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 457.2950744628906 2 457.295102 912.575651 0.20079 9.1819E-05 -0.062197 -2.8442E-05 0.13859 6.3377E-05 457.294972898104 63.825 1.0612 67.334 66.721 67.782 3.5083 225 87 3 0 0 0 0.061943 3 14212 14212;14250;14295 43.858 7.8141 1 1500600 20916 7022 12874 12883 25153;25154;25155 25153 0.11586654548113984 LAVSVSQIS 9 Unmodified _LAVSVSQIS_ 0 0 0 ENST00000381161.5_1_X:2748138-2799251:+|nuORF;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2 ENST00000381161.5_1_X:2748138-2799251:+|nuORF ENST00000381161.5_1_X:2748138-2799251:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.2690124511719 2 452.260925 902.507297 0.14191 6.4182E-05 0.70674 0.00031963 0.84865 0.00038381 452.26087313674884 39.548 0.28056 39.548 39.417 39.698 0 44 24 2 0 0 0 0.39745 1 7623 7623 8.1555 0 1 111350 20917 949 12875 12884 25156 25156 0.05214365177630498 LAVTVTVLH 9 Unmodified _LAVTVTVLH_ 0 0 0 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 MSMS UPN47_class_I_Rep_2 3 476.7945556640625 2 476.794935 951.575317 NaN NaN NaN NaN NaN NaN NaN 65.408 1 68.663 68.163 69.163 3.2556 0 0 0 0.38478 1 15647 15647 4.3292 0 1 20918 4629 12876 12885 25157 25157 0.09759234828266017 LAVTVTVLH 9 Unmodified _LAVTVTVLH_ 0 0 0 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 MULTI-MSMS UPN47_class_I_Rep_3 4 476.7943420410156 2 476.794935 951.575317 0.038299 1.8261E-05 -0.42054 -0.00020051 -0.38224 -0.00018225 476.79463794257396 65.214 0.37479 68.394 68.048 68.423 3.1795 39 29 2 0 0 0 0.32219 1 15649 15649 12.532 0 1 72622 20919 4629 12876 12885 25158 25158 0.09759234828266017 LAVVAGVAAE 10 Unmodified _LAVVAGVAAE_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS UPN46_class_I_Rep_3 1 450.26324462890625 2 450.263468 898.512382 0.10251 4.6159E-05 -0.55508 -0.00024993 -0.45256 -0.00020377 450.2632385452798 58.126 0.43453 58.126 57.852 58.287 0 72 48 2 0 0 0 0.2133 2 12767 12767;12783 46.021 2.2486 1 180290 20920 4958 12877 12886 25159;25160 25159 0.05906669040234647 LAVVAGVAAE 10 Unmodified _LAVVAGVAAE_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MSMS UPN46_class_I_Rep_3 1 450.2640075683594 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 58.293 1 58.293 57.793 58.793 0 0 0 0 0.53105 1 12822 12822 25.399 0.40835 1 20921 4958 12877 12886 25161 25161 0.05906669040234647 LAVVAGVAAE 10 Unmodified _LAVVAGVAAE_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS UPN47_class_I_Rep_1 2 450.2630310058594 2 450.263468 898.512382 -0.005101 -2.2968E-06 -0.58772 -0.00026463 -0.59282 -0.00026693 450.26310222763004 53.597 0.6921 57.124 56.772 57.464 3.5278 101 45 3 0 0 0 0.2133 3 11979 11979;12024;12062 46.021 2.2486 1 217210 20922 4958 12877 12886 25162;25163;25164 25162 0.05906669040234647 LAVVAGVAAE 10 Unmodified _LAVVAGVAAE_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS UPN47_class_I_Rep_2 3 450.2629699707031 2 450.263468 898.512382 -0.084859 -3.8209E-05 -0.50301 -0.00022649 -0.58787 -0.00026469 450.2631196199866 53.825 0.79635 57.148 56.803 57.6 3.3227 109 51 3 0 0 0 0.2133 3 12082 12082;12124;12163 46.021 2.2486 1 271490 20923 4958 12877 12886 25165;25166;25167 25165 0.05906669040234647 LAVVAGVAAE 10 Unmodified _LAVVAGVAAE_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS UPN47_class_I_Rep_3 4 450.2632141113281 2 450.263468 898.512382 -0.21408 -9.6392E-05 -0.4068 -0.00018317 -0.62088 -0.00027956 450.26319025009735 53.913 0.82052 57.099 56.79 57.611 3.1856 109 54 3 0 0 0 0.2133 3 12221 12144;12182;12221 52.268 4.674 1 247280 20924 4958 12877 12886 25168;25169;25170 25170 0.05906669040234647 LAVVKGLL 8 Unmodified _LAVVKGLL_ 0 0 0 REV__ENSG00000100726|ENST00000262319|TELO2 REV__ENSG00000100726|ENST00000262319|TELO2 MSMS UPN46_class_I_Rep_3 1 406.776123046875 2 406.783839 811.553125 NaN NaN NaN NaN NaN NaN NaN 33.361 1 33.361 32.861 33.861 0 0 0 0 0.40738 1 5825 5825 0.79363 0 1 + 20925 18131 12878 12887 25171 25171 0.1398105515053203 LAVVLIFFG 9 Unmodified _LAVVLIFFG_ 0 0 0 ENSG00000188340|ENST00000641131|OR6N2 ENSG00000188340|ENST00000641131|OR6N2 ENSG00000188340|ENST00000641131|OR6N2 MSMS UPN46_class_I_Rep_3 1 489.80609130859375 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 112.55 1 112.55 112.05 113.05 0 0 0 0 0.40038 1 27789 27789 0.6015 0 1 20926 5229 12879 12888 25172 25172 0.10529610839057568 LAVYVFCLCFQ 11 Unmodified _LAVYVFCLCFQ_ 0 0 0 L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|61|2|anti-sense L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|61|2|anti-sense L1PA8_dup7672|chr19:21549449-21550650:-|2.4099944102799213|0.363832208290546|2.73|143.0|61|2|anti-sense MSMS UPN46_class_I_Rep_3 1 435.7274169921875 3 435.883856 1304.62974 NaN NaN NaN NaN NaN NaN NaN 72.209 1 72.209 71.709 72.709 0 0 0 0 0.38417 1 16680 16680 0.50596 0 1 20927 14961 12880 12889 25173 25173 -0.010392574068191607 LAWFYFRV 8 Unmodified _LAWFYFRV_ 0 0 0 REV__L1PA12_dup803|chr7:92689149-92690571:-|4.941126898958129|0.0062831347375642|9.62|151.0|57|1|anti-sense REV__L1PA12_dup803|chr7:92689149-92690571:-|4.941126898958129|0.0062831347375642|9.62|151.0|57|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.343017578125 2 551.297645 1100.58074 NaN NaN NaN NaN NaN NaN NaN 62.397 1 62.397 61.897 62.897 0 0 0 0 0.40738 1 13946 13946 0.79363 0 1 + 20928 29075 12881 12890 25174 25174 0.034469584107455375 LAWHLQRQ 8 Unmodified _LAWHLQRQ_ 0 0 0 REV__ENSG00000106546|ENST00000242057|AHR REV__ENSG00000106546|ENST00000242057|AHR MSMS UPN48_class_I_Rep_1 5 526.2931518554688 2 526.293425 1050.5723 NaN NaN NaN NaN NaN NaN NaN 29.894 1 33.436 32.936 33.936 3.542 0 0 0 0.40738 1 4221 4221 0.79363 0 1 + 20929 18328 12882 12891 25175 25175 0.049034044941208776 LAWIKKIP 8 Unmodified _LAWIKKIP_ 0 0 0 REV__L1ME2_dup3131|chr3:179170622-179172999:+|3.7311105242385194|0.1183838598201748|4.98|151.0|48|2|sense REV__L1ME2_dup3131|chr3:179170622-179172999:+|3.7311105242385194|0.1183838598201748|4.98|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 484.8260192871094 2 484.818213 967.621873 NaN NaN NaN NaN NaN NaN NaN 114.72 1 118.37 117.87 118.87 3.6511 0 0 0 0.40738 1 27285 27285 0.79363 0 1 + 20930 27858 12883 12892 25176 25176 0.13676719450211294 LAWINDAAL 9 Unmodified _LAWINDAAL_ 0 0 0 REV__HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|162|1|anti-sense REV__HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|162|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.7696228027344 2 493.768917 985.523281 0.22529 0.00011124 -0.022729 -1.1223E-05 0.20256 0.00010002 493.7688160655461 54.233 0.73397 57.418 57.175 57.909 3.1856 72 45 2 0 0 0 0.46434 1 12368 12368 4.3292 0 1 90769 + 20931 23841 12884 12893 25177 25177 0.029940714145027414 LAWLEHAQ 8 Unmodified _LAWLEHAQ_ 0 0 0 REV__nc|ENSG00000155719|Q7RTW8|OTOA REV__nc|ENSG00000155719|Q7RTW8|OTOA MSMS UPN48_class_I_Rep_3 7 484.2524719238281 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 24.433 1 28.202 27.702 28.702 3.769 0 0 0 0.40738 1 2828 2828 0.79363 0 1 + 20932 32020 12885 12894 25178 25178 0.007729181002673613 LAWMLLIY 8 Unmodified _LAWMLLIY_ 0 0 0 L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|111|3|anti-sense L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|111|3|anti-sense L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|111|3|anti-sense MSMS UPN48_class_I_Rep_3 7 511.7923889160156 2 511.790807 1021.56706 NaN NaN NaN NaN NaN NaN NaN 83.475 1 87.203 86.703 87.703 3.7281 0 0 0 0.29788 1 19789 19789 32.454 0 1 20933 15483 12886 12895 25179 25179 0.057139645873007794 LAWPSDSLY 9 Unmodified _LAWPSDSLY_ 0 0 0 REV__ENST00000491154.1_1_X:153670803-153671016:+|nuORF REV__ENST00000491154.1_1_X:153670803-153671016:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 526.76025390625 2 526.258382 1050.50221 0.33077 0.00017407 0.050711 2.6687E-05 0.38148 0.00020076 526.2582196407537 76.97 0.33766 80.481 80.272 80.61 3.5102 49 36 2 0 0 0 0.32219 1 18290 18290 12.532 3.1841 1 107970 + 20934 22630 12887 12896 25180 25180 -0.0210193868499573 LAWRMAPC 8 Unmodified _LAWRMAPC_ 0 0 0 MLT1E1A_dup3057|chr16:89473965-89474332:+|1.7047899552485724|0.0103433298119159|7.36|151.0|17|1|anti-sense MLT1E1A_dup3057|chr16:89473965-89474332:+|1.7047899552485724|0.0103433298119159|7.36|151.0|17|1|anti-sense MLT1E1A_dup3057|chr16:89473965-89474332:+|1.7047899552485724|0.0103433298119159|7.36|151.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 474.23284912109375 2 474.233133 946.451713 NaN NaN NaN NaN NaN NaN NaN 42.7 1 42.7 42.2 43.2 0 0 0 0 0.40738 1 8474 8474 0.79363 0 1 20935 16368 12888 12897 25181 25181 -0.023654628153508384 LAWYMTMSV 9 Unmodified _LAWYMTMSV_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MSMS UPN47_class_I_Rep_3 4 551.2590942382812 2 551.259013 1100.50347 NaN NaN NaN NaN NaN NaN NaN 85.776 1 89.148 88.648 89.648 3.3716 0 0 0 0.38478 1 21491 21491 4.3292 0 1 20936 5444 12889 12898 25182 25182 -0.042757639120964086 LAYGLNLAK 9 Unmodified _LAYGLNLAK_ 0 0 0 REV__nc|ENSG00000163359|P12111-4|COL6A3 REV__nc|ENSG00000163359|P12111-4|COL6A3 MSMS UPN47_class_I_Rep_3 4 481.8341064453125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 27.835 1 31.168 30.668 31.668 3.3337 0 0 0 0.39428 1 4283 4283 2.0598 0 1 + 20937 17464 12890 12899 25183 25183 0.07734948311224343 LAYWAGAW 8 Unmodified _LAYWAGAW_ 0 0 0 REV__ENSG00000073849.16,ST6GAL1,chr3,+,I4.1,186942428,186948854|42|8.84|1|intron REV__ENSG00000073849.16,ST6GAL1,chr3,+,I4.1,186942428,186948854|42|8.84|1|intron MSMS UPN47_class_I_Rep_2 3 469.2301330566406 2 469.231971 936.449388 NaN NaN NaN NaN NaN NaN NaN 40.724 1 44.095 43.595 44.595 3.3712 0 0 0 0.40581 1 8138 8138 2.8892 0.58649 1 + 20938 17841 12891 12900 25184 25184 -0.021378519571612742 LCCDSCPLWLD 11 Unmodified _LCCDSCPLWLD_ 0 0 0 REV__MLT1C_dup13819|chr12:104612161-104612610:-|2.5553596331085275|0.0098540799400096|8.02|151.0|19|1|anti-sense REV__MLT1C_dup13819|chr12:104612161-104612610:-|2.5553596331085275|0.0098540799400096|8.02|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 634.2606201171875 2 634.261427 1266.5083 NaN NaN NaN NaN NaN NaN NaN 27.799 1 31.43 30.93 31.93 3.6311 0 0 0 0.38417 1 3736 3736 0.30703 0 1 + 20939 31635 12892 12901 25185 25185 -0.11429247831642897 LCCGAKGMLIY 11 Unmodified _LCCGAKGMLIY_ 0 0 0 L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|3|1|sense L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|3|1|sense L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 586.2968139648438 2 586.287248 1170.55994 NaN NaN NaN NaN NaN NaN NaN 53.437 1 56.964 56.464 57.464 3.5278 0 0 0 0.36307 1 11972 11972 8.1555 0.8663 1 20940 13889 12893 12902 25186 25186 -0.018514593470627005 LCCHCHCCW 9 Unmodified _LCCHCHCCW_ 0 0 0 L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 554.204345703125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 116.18 1 119.68 119.18 120.18 3.4965 0 0 0 0.40038 1 28356 28356 0.6015 0.076735 1 20941 15436 12894 12903 25187 25187 -0.2112276023576669 LCCHCHCCW 9 Unmodified _LCCHCHCCW_ 0 0 0 L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 554.1769409179688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 117.41 1 120.9 120.4 121.4 3.4891 0 0 0 0.40038 1 28693 28693 0.6015 0 1 20942 15436 12894 12903 25188 25188 -0.2112276023576669 LCCHCHCCW 9 Unmodified _LCCHCHCCW_ 0 0 0 L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1755981445312 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 16.756 1 20.118 19.618 20.618 3.3619 0 0 0 0.40038 1 1101 1101 0.6015 0 1 20943 15436 12894 12903 25189 25189 -0.2112276023576669 LCCHHRSWE 9 Unmodified _LCCHHRSWE_ 0 0 0 REV__Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|72|3|sense REV__Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|72|3|sense MSMS UPN48_class_I_Rep_1 5 585.7487182617188 2 585.75021 1169.48587 NaN NaN NaN NaN NaN NaN NaN 34.652 1 38.166 37.666 38.666 3.5144 0 0 0 0.39518 1 5571 5571 1.8442 0.19162 1 + 20944 32465 12895 12904 25190 25190 -0.09209666394372107 LCCPGWLRTPY 11 Unmodified _LCCPGWLRTPY_ 0 0 0 AluJr_dup33934|chr7:101963665-101963949:-|1.1244863262125386|0.0039276502855027|8.16|151.0|18|3|anti-sense AluJr_dup33934|chr7:101963665-101963949:-|1.1244863262125386|0.0039276502855027|8.16|151.0|18|3|anti-sense AluJr_dup33934|chr7:101963665-101963949:-|1.1244863262125386|0.0039276502855027|8.16|151.0|18|3|anti-sense MSMS UPN47_class_I_Rep_1 2 436.76788330078125 3 436.879104 1307.61548 NaN NaN NaN NaN NaN NaN NaN 75.742 1 79.145 78.645 79.645 3.4034 0 0 0 0.38417 1 18712 18712 0.45452 0 1 20945 144 12896 12905 25191 25191 -0.026019098350843706 LCDLHYENL 9 Unmodified _LCDLHYENL_ 0 0 0 REV__L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|86|2|anti-sense REV__L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|86|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.259521484375 2 560.260599 1118.50665 NaN NaN NaN NaN NaN NaN NaN 67.822 1 71.274 70.774 71.774 3.4517 0 0 0 0.3967 1 15618 15618 1.4819 0 1 + 20946 27626 12897 12906 25192 25192 -0.04786797533756726 LCDVTHPLE 9 Unmodified _LCDVTHPLE_ 0 0 0 REV__ENSG00000131459|ENST00000253778|GFPT2 REV__ENSG00000131459|ENST00000253778|GFPT2 MSMS UPN48_class_I_Rep_1 5 513.750244140625 2 513.749867 1025.48518 NaN NaN NaN NaN NaN NaN NaN 118.58 1 122.2 121.7 122.7 3.6189 0 0 0 0.39428 1 28924 28924 2.0598 0 1 + 20947 18980 12898 12907 25193 25193 -0.02654182562423557 LCEQKQTQI 9 Unmodified _LCEQKQTQI_ 0 0 0 REV__LTR1B1_dup136|chr12:25084890-25085748:-|1.4094482362517131|0.0425617995569084|5.05|151.0|48|3|anti-sense REV__LTR1B1_dup136|chr12:25084890-25085748:-|1.4094482362517131|0.0425617995569084|5.05|151.0|48|3|anti-sense MSMS UPN48_class_I_Rep_3 7 545.7799072265625 2 545.781699 1089.54884 NaN NaN NaN NaN NaN NaN NaN 40.528 1 44.179 43.679 44.679 3.6509 0 0 0 0.39598 1 7218 7218 1.6526 0 1 + 20948 30871 12899 12908 25194 25194 0.007651778746321725 LCFCVVLGTW 10 Unmodified _LCFCVVLGTW_ 0 0 0 Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|58|2|anti-sense Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|58|2|anti-sense Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.7813720703125 2 570.782656 1139.55076 0.51695 0.00029507 -1.4635 -0.00083534 -0.94654 -0.00054027 570.7817237933034 53.854 0.67065 57.172 56.839 57.51 3.3187 59 42 2 0 0 0 0.51565 1 12119 12119 10.074 4.3421 1 107850 20949 32825 12900 12909 25195 25195 -0.013434846410973478 LCFCVVLGTW 10 Unmodified _LCFCVVLGTW_ 0 0 0 Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|58|2|anti-sense Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|58|2|anti-sense Ricksha_0_dup353|chr17:82989520-82990714:-|1.6726492434546276|0.0441840209447844|5.24|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.7822265625 2 570.782656 1139.55076 0.46671 0.00026639 -1.3335 -0.00076113 -0.86676 -0.00049473 570.7819063617821 54.035 0.56115 57.22 56.887 57.449 3.1856 55 36 2 0 0 0 0.51565 2 12231 12189;12231 10.074 3.8681 1 111900 20950 32825 12900 12909 25196;25197 25197 -0.013434846410973478 LCFDPILYY 9 Unmodified _LCFDPILYY_ 0 0 0 ENSG00000174946|ENST00000309180|GPR171 ENSG00000174946|ENST00000309180|GPR171 ENSG00000174946|ENST00000309180|GPR171 MSMS UPN47_class_I_Rep_3 4 573.7785034179688 2 573.780636 1145.54672 NaN NaN NaN NaN NaN NaN NaN 18.299 1 21.654 21.154 22.154 3.3545 0 0 0 0.39428 1 1498 1498 2.0598 0 1 20951 4699 12901 12910 25198 25198 -0.020232508631806922 LCFFFFWLW 9 Unmodified _LCFFFFWLW_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|303|3|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|303|3|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|303|3|anti-sense MSMS UPN47_class_I_Rep_1 2 436.8794250488281 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 98.983 1 102.78 102.28 103.28 3.7926 0 0 0 0.3979 1 24491 24491 1.1933 0.41681 1 20952 14107 12902 12911 25199 25199 -0.021346576300402376 LCFFRCRL 8 Unmodified _LCFFRCRL_ 0 0 0 REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|123|2|anti-sense REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|123|2|anti-sense MSMS UPN47_class_I_Rep_3 4 529.2748413085938 2 529.275332 1056.53611 NaN NaN NaN NaN NaN NaN NaN 116.36 1 119.82 119.32 120.32 3.462 0 0 0 0.40738 1 28631 28631 0.79363 0 1 + 20953 26749 12903 12912 25200 25200 0.01010488001406884 LCFKKKKK 8 Unmodified _LCFKKKKK_ 0 0 0 AluSz_dup96299|chr19:48980384-48980689:+|1.0725113075523796|0.2458264538411848|2.13|151.0|4|1|sense AluSz_dup96299|chr19:48980384-48980689:+|1.0725113075523796|0.2458264538411848|2.13|151.0|4|1|sense AluSz_dup96299|chr19:48980384-48980689:+|1.0725113075523796|0.2458264538411848|2.13|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 511.8316650390625 2 511.830798 1021.64704 NaN NaN NaN NaN NaN NaN NaN 31.954 1 35.595 35.095 36.095 3.641 0 0 0 0.40798 1 4875 4875 0 0 1 20954 373 12904 12913 25201 25201 0.13708450981152964 LCFKKKKW 8 Unmodified _LCFKKKKW_ 0 0 0 REV__MLT2C1_dup1763|chr11:73115554-73115982:-|2.447693624071916|0.0155592721281058|7.3|151.0|4|1|sense REV__MLT2C1_dup1763|chr11:73115554-73115982:-|2.447693624071916|0.0155592721281058|7.3|151.0|4|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 541.2343139648438 2 540.822973 1079.63139 -0.062395 -3.3745E-05 0.54221 0.00029324 0.47982 0.0002595 540.8230610037415 22.452 0.051088 22.452 22.426 22.477 0 4 2 2 0 0 0 0.72333 1 2662 2662 0.79363 0 1 45312 + 20955 31832 12905 12914 25202 25202 0.09476164464126668 LCFKKRKKKRH 11 Unmodified _LCFKKRKKKRH_ 0 0 0 L1MC5_dup11071|chr12:116207563-116208112:+|2.3924268572220586|0.0107236674027272|7.8|151.0|12|2|sense L1MC5_dup11071|chr12:116207563-116208112:+|2.3924268572220586|0.0107236674027272|7.8|151.0|12|2|sense L1MC5_dup11071|chr12:116207563-116208112:+|2.3924268572220586|0.0107236674027272|7.8|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 491.3094787597656 3 491.310002 1470.90818 NaN NaN NaN NaN NaN NaN NaN 110.81 1 114.39 113.89 114.89 3.5835 0 0 0 0.38417 1 27320 27320 0.094841 0.011491 1 20956 11655 12906 12915 25203 25203 0.19155830680892905 LCFKKRKKKRH 11 Unmodified _LCFKKRKKKRH_ 0 0 0 L1MC5_dup11071|chr12:116207563-116208112:+|2.3924268572220586|0.0107236674027272|7.8|151.0|12|2|sense L1MC5_dup11071|chr12:116207563-116208112:+|2.3924268572220586|0.0107236674027272|7.8|151.0|12|2|sense L1MC5_dup11071|chr12:116207563-116208112:+|2.3924268572220586|0.0107236674027272|7.8|151.0|12|2|sense MSMS UPN47_class_I_Rep_2 3 491.3089294433594 3 491.310002 1470.90818 NaN NaN NaN NaN NaN NaN NaN 110.69 1 114.22 113.72 114.72 3.5271 0 0 0 0.38417 1 26946 26946 0.094841 0.011491 1 20957 11655 12906 12915 25204 25204 0.19155830680892905 LCFKSFVI 8 Unmodified _LCFKSFVI_ 0 0 0 L1MA10_dup2430|chr8:120573967-120574550:+|1.3828044347157389|0.0648635336899463|4.41|150.0|35|2|anti-sense L1MA10_dup2430|chr8:120573967-120574550:+|1.3828044347157389|0.0648635336899463|4.41|150.0|35|2|anti-sense L1MA10_dup2430|chr8:120573967-120574550:+|1.3828044347157389|0.0648635336899463|4.41|150.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 478.76824951171875 2 478.767332 955.52011 NaN NaN NaN NaN NaN NaN NaN 31.405 1 34.705 34.205 35.205 3.2991 0 0 0 0.40581 1 5347 5347 2.8892 0 1 20958 9312 12907 12916 25205 25205 0.04057105036167741 LCFWVIIE 8 Unmodified _LCFWVIIE_ 0 0 0 REV__L1PA6_dup4888|chr13:40837732-40841867:+|1.314296541976958|0.4091051293608128|1.68|151.0|192|2|anti-sense REV__L1PA6_dup4888|chr13:40837732-40841867:+|1.314296541976958|0.4091051293608128|1.68|151.0|192|2|anti-sense MSMS UPN48_class_I_Rep_2 6 511.7734680175781 2 511.772614 1021.53067 NaN NaN NaN NaN NaN NaN NaN 74.249 1 77.827 77.327 78.327 3.5779 0 0 0 0.40404 1 17464 17464 5.2307 0 1 + 20959 29922 12908 12917 25206 25206 0.020770876905999103 LCHAFFRS 8 Unmodified _LCHAFFRS_ 0 0 0 REV__L1MA3_dup5496|chrX:97002649-97005538:-|1.570864784851442|0.0202648419910296|6.28|150.0|170|3|anti-sense REV__L1MA3_dup5496|chrX:97002649-97005538:-|1.570864784851442|0.0202648419910296|6.28|150.0|170|3|anti-sense MSMS UPN48_class_I_Rep_2 6 490.7430114746094 2 490.742179 979.469806 NaN NaN NaN NaN NaN NaN NaN 24.889 1 28.525 28.025 29.025 3.6363 0 0 0 0.40738 1 2951 2951 0.79363 0 1 + 20960 25051 12909 12918 25207 25207 -0.020750045689851504 LCHAFFRS 8 Unmodified _LCHAFFRS_ 0 0 0 REV__L1MA3_dup5496|chrX:97002649-97005538:-|1.570864784851442|0.0202648419910296|6.28|150.0|170|3|anti-sense REV__L1MA3_dup5496|chrX:97002649-97005538:-|1.570864784851442|0.0202648419910296|6.28|150.0|170|3|anti-sense MSMS UPN48_class_I_Rep_2 6 490.7426452636719 2 490.742179 979.469806 NaN NaN NaN NaN NaN NaN NaN 25.146 1 28.783 28.283 29.283 3.6363 0 0 0 0.40738 1 3021 3021 0.79363 0 1 + 20961 25051 12909 12918 25208 25208 -0.020750045689851504 LCHALGGAVLF 11 Unmodified _LCHALGGAVLF_ 0 0 0 REV__ENST00000589145.1_1_17:74547086-74547188:-|nuORF REV__ENST00000589145.1_1_17:74547086-74547188:-|nuORF MSMS UPN48_class_I_Rep_1 5 550.8014526367188 2 550.799694 1099.58484 NaN NaN NaN NaN NaN NaN NaN 64.922 1 68.376 67.876 68.876 3.4541 0 0 0 0.38417 1 14732 14732 6.7232 1.4263 1 + 20962 23157 12910 12919 25209 25209 0.039026798421446074 LCHEVLLYR 9 Unmodified _LCHEVLLYR_ 0 0 0 L1PA13_dup6777|chr12:1301351-1301833:+|1.7683739849990665|0.0183947391389786|6.59|151.0|35|3|anti-sense L1PA13_dup6777|chr12:1301351-1301833:+|1.7683739849990665|0.0183947391389786|6.59|151.0|35|3|anti-sense L1PA13_dup6777|chr12:1301351-1301833:+|1.7683739849990665|0.0183947391389786|6.59|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 573.3092041015625 2 573.310426 1144.6063 NaN NaN NaN NaN NaN NaN NaN 81.462 1 81.462 80.962 81.962 0 0 0 0 0.39428 1 19239 19239 2.0598 1.2661 1 20963 13777 12911 12920 25210 25210 0.039780648708756416 LCHHCEHS 8 Unmodified _LCHHCEHS_ 0 0 0 L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|34|2|sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|34|2|sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 482.75732421875 2 483.189454 964.364355 NaN NaN NaN NaN NaN NaN NaN 70.075 1 70.075 69.575 70.575 0 0 0 0 0.40738 1 16086 16086 0.79363 0 1 20964 13818 12912 12921 25211 25211 -0.11925288756913233 LCIFLGEECCF 11 Unmodified _LCIFLGEECCF_ 0 0 0 HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|2|1|sense HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|2|1|sense HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 638.77197265625 2 638.77417 1275.53379 NaN NaN NaN NaN NaN NaN NaN 64.635 1 68.114 67.614 68.614 3.4792 0 0 0 0.38417 1 14629 14629 1.4819 0.15237 1 20965 8079 12913 12922 25212 25212 -0.09295773309213473 LCIFWITV 8 Unmodified _LCIFWITV_ 0 0 0 L1MC1_dup12851|chr22:40089536-40090650:-|3.162609699459533|0.0348488093666334|6.5|151.0|66|2|anti-sense;L1MC1_dup9593|chr12:12773550-12774262:+|1.851440627143168|0.0354275280746385|5.71|151.0|33|2|anti-sense L1MC1_dup12851|chr22:40089536-40090650:-|3.162609699459533|0.0348488093666334|6.5|151.0|66|2|anti-sense L1MC1_dup12851|chr22:40089536-40090650:-|3.162609699459533|0.0348488093666334|6.5|151.0|66|2|anti-sense MSMS UPN47_class_I_Rep_1 2 497.7770690917969 2 497.775157 993.53576 NaN NaN NaN NaN NaN NaN NaN 74.661 1 78.055 77.555 78.555 3.3937 0 0 0 0.38547 1 18387 18387 13.508 0 1 20966 11115 12914 12923 25213 25213 0.038733915532020546 LCIFYFSTR 9 Unmodified _LCIFYFSTR_ 0 0 0 REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|214|2|anti-sense REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|214|2|anti-sense MSMS UPN48_class_I_Rep_1 5 575.291259765625 2 575.291702 1148.56885 NaN NaN NaN NaN NaN NaN NaN 62.894 1 66.356 65.856 66.856 3.4625 0 0 0 0.38916 1 14114 14114 3.2813 0 1 + 20967 30514 12915 12924 25214 25214 0.0005097360524359829 LCIVCQGHP 9 Unmodified _LCIVCQGHP_ 0 0 0 REV__ENSG00000163481|ENST00000295704|RNF25 REV__ENSG00000163481|ENST00000295704|RNF25 MSMS UPN47_class_I_Rep_1 2 485.2367858886719 2 485.235873 968.457192 NaN NaN NaN NaN NaN NaN NaN 36.032 1 39.708 39.208 40.208 3.6762 0 0 0 0.39428 1 6678 6678 2.0598 1.2661 1 + 20968 19979 12916 12925 25215 25215 -0.028297840235381955 LCKAIYVKR 9 Unmodified _LCKAIYVKR_ 0 0 0 REV__L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|9|1|sense REV__L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 547.3326416015625 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 87.1 1 90.817 90.317 91.317 3.7171 0 0 0 0.39428 1 20719 20719 2.0598 0.21551 1 + 20969 28909 12917 12926 25216 25216 0.10515245630199388 LCKKIQLP 8 Unmodified _LCKKIQLP_ 0 0 0 Tigger17a_dup2017|chr18:12967096-12967631:-|1.766293937183622|0.1961841939797686|3.17|151.0|14|3|sense Tigger17a_dup2017|chr18:12967096-12967631:-|1.766293937183622|0.1961841939797686|3.17|151.0|14|3|sense Tigger17a_dup2017|chr18:12967096-12967631:-|1.766293937183622|0.1961841939797686|3.17|151.0|14|3|sense MSMS UPN47_class_I_Rep_2 3 471.79437255859375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 34.292 1 37.731 37.231 38.231 3.4398 0 0 0 0.40604 1 6184 6184 2.5775 0 1 20970 33255 12918 12927 25217 25217 0.10008482818830089 LCKKQKSF 8 Unmodified _LCKKQKSF_ 0 0 0 REV__Charlie5_dup2080|chr15:63548961-63550023:-|3.3251945032318067|0.1445381162050155|4.52|151.0|16|2|sense REV__Charlie5_dup2080|chr15:63548961-63550023:-|3.3251945032318067|0.1445381162050155|4.52|151.0|16|2|sense MSMS UPN47_class_I_Rep_3 4 491.28179931640625 2 491.281137 980.547722 NaN NaN NaN NaN NaN NaN NaN 112.96 1 116.47 115.97 116.97 3.5098 0 0 0 0.40746 1 27697 27697 0.69038 0 1 + 20971 17387 12919 12928 25218 25218 0.05667008296404674 LCKMYICD 8 Unmodified _LCKMYICD_ 0 0 0 REV__L1MB4_dup6195|chr12:2846885-2847376:-|2.856211854753973|0.2631122500642578|3.44|151.0|4|1|sense REV__L1MB4_dup6195|chr12:2846885-2847376:-|2.856211854753973|0.2631122500642578|3.44|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 494.7183837890625 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 65.075 1 68.255 67.755 68.755 3.1795 0 0 0 0.40746 1 15605 15605 0.69038 0 1 + 20972 25991 12920 12929 25219 25219 -0.0714336822666155 LCKTYNRHPC 10 Unmodified _LCKTYNRHPC_ 0 0 0 REV__L1MB7_dup22771|chr22:46943585-46944291:-|1.0930191654218702|0.049202960746694|4.47|151.0|14|2|sense REV__L1MB7_dup22771|chr22:46943585-46944291:-|1.0930191654218702|0.049202960746694|4.47|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 617.7922973632812 2 617.794617 1233.57468 NaN NaN NaN NaN NaN NaN NaN 22.759 1 26.32 25.82 26.82 3.5605 0 0 0 0.53105 1 2268 2268 1.4819 0.28856 1 + 20973 26233 12921 12930 25220 25220 -0.03276251154716192 LCLIRELAKVP 11 Unmodified _LCLIRELAKVP_ 0 0 0 HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|142|3|sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|142|3|sense HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|142|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.883544921875 2 627.883758 1253.75296 0.55811 0.00035043 -0.16532 -0.0001038 0.39278 0.00024662 627.8838443636937 103.85 0.2305 107.62 107.51 107.74 3.7627 43 36 2 0 0 0 0.65271 1 25558 25558 2.9952 0 1 42059000 20974 8385 12922 12931 25221 25221 0.1362374203595209 LCLPLRPAV 9 Unmodified _LCLPLRPAV_ 0 0 0 ENST00000547760.1_3_14:31897374-31926552:-|nuORF ENST00000547760.1_3_14:31897374-31926552:-|nuORF ENST00000547760.1_3_14:31897374-31926552:-|nuORF MSMS UPN48_class_I_Rep_2 6 491.3091125488281 2 491.29933 980.584108 NaN NaN NaN NaN NaN NaN NaN 109.79 1 113.46 112.96 113.96 3.6715 0 0 0 0.35339 1 26142 26142 7.9102 2.1497 1 20975 7386 12923 12932 25222 25222 0.09303885193105543 LCLPTIRLQ 9 Unmodified _LCLPTIRLQ_ 0 0 0 Charlie4z_dup776|chr2:144467399-144467583:-|1.2005492927749657|0.0044766750874371|8.07|151.0|6|3|sense Charlie4z_dup776|chr2:144467399-144467583:-|1.2005492927749657|0.0044766750874371|8.07|151.0|6|3|sense Charlie4z_dup776|chr2:144467399-144467583:-|1.2005492927749657|0.0044766750874371|8.07|151.0|6|3|sense MSMS UPN48_class_I_Rep_1 5 528.81640625 2 528.815344 1055.61614 NaN NaN NaN NaN NaN NaN NaN 89.23 1 92.855 92.355 93.355 3.6255 0 0 0 0.39428 1 21419 21419 2.0598 0 1 20976 529 12924 12933 25223 25223 0.09055252876260056 LCLSSRLL 8 Unmodified _LCLSSRLL_ 0 0 0 L1MEf_dup7309|chr10:21571651-21572616:-|1.0928243923756988|0.0046516148887052|7.88|150.0|49|1|anti-sense L1MEf_dup7309|chr10:21571651-21572616:-|1.0928243923756988|0.0046516148887052|7.88|150.0|49|1|anti-sense L1MEf_dup7309|chr10:21571651-21572616:-|1.0928243923756988|0.0046516148887052|7.88|150.0|49|1|anti-sense MSMS UPN48_class_I_Rep_1 5 452.76849365234375 2 452.767863 903.521173 NaN NaN NaN NaN NaN NaN NaN 46.504 1 50.023 49.523 50.523 3.5192 0 0 0 0.40604 1 9087 9087 2.5775 0 1 20977 13313 12925 12934 25224 25224 0.06555319405072169 LCNACTEIAY 10 Unmodified _LCNACTEIAY_ 0 0 0 L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|45|3|anti-sense L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|45|3|anti-sense L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|45|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 550.34033203125 2 550.741185 1099.46782 0.44121 0.00024299 -0.78899 -0.00043453 -0.34778 -0.00019154 550.7405820455466 60.594 0.055897 63.976 63.947 64.003 3.3815 7 5 2 0 0 0 0.84575 1 14153 14153 6.7232 1.9672 1 56090 20978 12853 12926 12935 25225 25225 -0.07793846159779605 LCNACTEIAY 10 Unmodified _LCNACTEIAY_ 0 0 0 L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|45|3|anti-sense L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|45|3|anti-sense L1ME4a_dup12050|chr5:169887301-169888011:-|1.5690188596557249|0.037136559346243|5.4|151.0|45|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 550.741185 1099.46782 0.46288 0.00025493 -1.4387 -0.00079237 -0.97587 -0.00053745 550.7400647978043 60.862 0.05101 64.127 64.09 64.141 3.2654 0.075717 -0.00049029 NaN 6.7232 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 102220 20979 12853 12926 12935 -0.07793846159779605 LCNLQLVK 8 Unmodified _LCNLQLVK_ 0 0 0 MER49_dup246|chr2:240539772-240540330:+|1.0620558543023757|0.061831391272461|4.1|151.0|34|3|anti-sense MER49_dup246|chr2:240539772-240540330:+|1.0620558543023757|0.061831391272461|4.1|151.0|34|3|anti-sense MER49_dup246|chr2:240539772-240540330:+|1.0620558543023757|0.061831391272461|4.1|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_3 7 465.7769470214844 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 72.317 1 75.844 75.344 76.344 3.5266 0 0 0 0.40604 1 16848 16848 2.5775 0 1 20980 16010 12927 12936 25226 25226 0.06923605922111165 LCPCFIQLVG 10 Unmodified _LCPCFIQLVG_ 0 0 0 REV__L1MC_dup7605|chr19:11900651-11901063:-|1.250759439663505|0.1249219687263847|3.32|150.0|23|2|anti-sense REV__L1MC_dup7605|chr19:11900651-11901063:-|1.250759439663505|0.1249219687263847|3.32|150.0|23|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7839965820312 2 546.782656 1091.55076 NaN NaN NaN NaN NaN NaN NaN 35.313 1 38.738 38.238 39.238 3.4253 0 0 0 0.53105 1 6495 6495 1.8442 0.19162 1 + 20981 26479 12928 12937 25227 25227 0.008645153588759058 LCPFPWYA 8 Unmodified _LCPFPWYA_ 0 0 0 REV__Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|23|2|sense REV__Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 498.7366027832031 2 498.736031 995.45751 -0.58832 -0.00029342 1.4371 0.00071674 0.8488 0.00042333 498.73660262330503 17.684 0.081131 21.042 20.972 21.053 3.3581 11 9 2 0 0 0 0.82752 1 1333 1333 0.79363 0 1 23505 + 20982 32513 12929 12938 25228 25228 -0.04040041032044428 LCPFTSIK 8 Unmodified _LCPFTSIK_ 0 0 0 REV__MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|109|3|anti-sense REV__MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|109|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.75048828125 2 454.749139 907.483725 -0.19725 -8.97E-05 0.46312 0.0002106 0.26587 0.0001209 454.7509641143321 45.628 0.62281 49.328 48.997 49.62 3.6999 54 33 2 0 0 0 0.82752 1 9557 9557 2.5775 0 1 96512 + 20983 31376 12930 12939 25229 25229 0.026282281394628626 LCPHRNPMSN 10 Unmodified _LCPHRNPMSN_ 0 0 0 MSTA_dup11623|chrX:81295976-81296336:-|1.1754778221079287|0.459476094443268|1.36|151.0|1|1|sense MSTA_dup11623|chrX:81295976-81296336:-|1.1754778221079287|0.459476094443268|1.36|151.0|1|1|sense MSTA_dup11623|chrX:81295976-81296336:-|1.1754778221079287|0.459476094443268|1.36|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 584.77001953125 2 584.771142 1167.52773 NaN NaN NaN NaN NaN NaN NaN 76.625 1 76.625 76.125 77.125 0 0 0 0 0.53105 1 17884 17884 1.4819 0.15237 1 20984 16523 12931 12940 25230 25230 -0.049331107058605994 LCQFAKGMLP 10 Unmodified _LCQFAKGMLP_ 0 0 0 L1PA3_dup342|chr1:107583267-107584569:+|1.1600632510260431|0.1505407167475232|2.95|151.0|67|2|anti-sense L1PA3_dup342|chr1:107583267-107584569:+|1.1600632510260431|0.1505407167475232|2.95|151.0|67|2|anti-sense L1PA3_dup342|chr1:107583267-107584569:+|1.1600632510260431|0.1505407167475232|2.95|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_2 6 554.25439453125 2 554.288105 1106.56166 NaN NaN NaN NaN NaN NaN NaN 111.87 1 115.54 115.04 116.04 3.6666 0 0 0 0.53105 1 26625 26625 1.4819 0 1 20985 14255 12932 12941 25231 25231 0.01263917733172093 LCRFLPARGY 10 Unmodified _LCRFLPARGY_ 0 0 0 ENST00000414656.1_1_9:139700878-139703284:-|nuORF ENST00000414656.1_1_9:139700878-139703284:-|nuORF ENST00000414656.1_1_9:139700878-139703284:-|nuORF MSMS UPN48_class_I_Rep_1 5 598.3795776367188 2 598.323868 1194.63318 NaN NaN NaN NaN NaN NaN NaN 55.899 1 59.4 58.9 59.9 3.5014 0 0 0 0.53105 1 11976 11976 1.4819 0 1 20986 6640 12933 12942 25232 25232 0.043651734820741694 LCRKMLVR 8 Unmodified _LCRKMLVR_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|36|1|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|36|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.3059997558594 2 509.804257 1017.59396 0.30798 0.00015701 -1.0462 -0.00053334 -0.73818 -0.00037633 509.80357828282575 82.215 0.34032 82.215 82.099 82.439 0 38 27 2 0 0 0 0.82752 1 19466 19466 0.69038 0 1 166230 + 20987 31194 12934 12943 25233 25233 0.08586749926837456 LCRLMCMFMS 10 Unmodified _LCRLMCMFMS_ 0 0 0 Tigger3b_dup4461|chr11:67177273-67178021:-|1.099397500570524|0.021393876829059|5.68|151.0|22|3|sense Tigger3b_dup4461|chr11:67177273-67178021:-|1.099397500570524|0.021393876829059|5.68|151.0|22|3|sense Tigger3b_dup4461|chr11:67177273-67178021:-|1.099397500570524|0.021393876829059|5.68|151.0|22|3|sense MSMS UPN47_class_I_Rep_3 4 617.7678833007812 2 617.767311 1233.52007 NaN NaN NaN NaN NaN NaN NaN 29.352 1 32.676 32.176 33.176 3.3235 0 0 0 0.53105 1 4733 4733 1.6526 0 1 20988 33397 12935 12944 25234 25234 -0.08735045613661896 LCRMHISDCL 10 Unmodified _LCRMHISDCL_ 0 0 0 REV__L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|35|3|sense REV__L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 595.7781372070312 2 595.777579 1189.5406 0.54223 0.00032305 -0.38187 -0.00022751 0.16037 9.5543E-05 595.7773418111929 58.614 0.62664 62.101 61.893 62.519 3.487 67 41 2 0 0 0 0.4965 1 12797 12797 12.241 6.0349 1 151440 + 20989 25695 12936 12945 25235 25235 -0.04658415637959479 LCRQRWYMV 9 Unmodified _LCRQRWYMV_ 0 0 0 REV__Charlie25_dup629|chr9:94853472-94855071:+|1.4961770054343675|0.0188922881631239|6.31|151.0|48|3|sense REV__Charlie25_dup629|chr9:94853472-94855071:+|1.4961770054343675|0.0188922881631239|6.31|151.0|48|3|sense MSMS UPN48_class_I_Rep_1 5 627.8156127929688 2 627.815353 1253.61615 NaN NaN NaN NaN NaN NaN NaN 36.029 1 39.539 39.039 40.039 3.5101 0 0 0 0.40038 1 5968 5968 0.6015 0 1 + 20990 17365 12937 12946 25236 25236 -0.0005107039539780089 LCRRCCCG 8 Unmodified _LCRRCCCG_ 0 0 0 REV__L1PREC2_dup7039|chr18:9173370-9174805:-|1.5333971916925715|0.0360346649712082|5.41|151.0|59|2|anti-sense REV__L1PREC2_dup7039|chr18:9173370-9174805:-|1.5333971916925715|0.0360346649712082|5.41|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_1 2 456.86322021484375 2 457.184803 912.355052 NaN NaN NaN NaN NaN NaN NaN 78.812 1 82.258 81.758 82.758 3.4456 0 0 0 0.40738 1 19607 19607 0.79363 0 1 + 20991 30750 12938 12947 25237 25237 -0.10463096638443403 LCRYHFSY 8 Unmodified _LCRYHFSY_ 0 0 0 REV__L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|184|3|anti-sense REV__L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|184|3|anti-sense MSMS UPN47_class_I_Rep_2 3 544.7543334960938 2 544.752744 1087.49094 NaN NaN NaN NaN NaN NaN NaN 43.83 1 47.188 46.688 47.688 3.358 0 0 0 0.40404 1 9080 9080 5.2307 2.3415 1 + 20992 24983 12939 12948 25238 25238 -0.04931039260122816 LCSFFFHYF 9 Unmodified _LCSFFFHYF_ 0 0 0 L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|34|3|anti-sense L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|34|3|anti-sense L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|34|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 605.7740478515625 2 605.773145 1209.53174 0.54135 0.00032793 -1.4364 -0.00087015 -0.89508 -0.00054222 605.7725532428946 50.999 0.8893 54.215 53.9 54.79 3.2163 82 44 3 0 0 0 0.11897 1 11335 11335 30.225 4.8255 1 197420 20993 12983 12940 12949 25239 25239 -0.06464697940509723 LCSFFFHYF 9 Unmodified _LCSFFFHYF_ 0 0 0 L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|34|3|anti-sense L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|34|3|anti-sense L1MEb_dup152|chr2:20328351-20328807:+|1.0980280721028215|0.0166518245525328|6.04|151.0|34|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 605.773145 1209.53174 0.27957 0.00016935 -0.99103 -0.00060034 -0.71147 -0.00043099 605.772628057495 50.655 0.75138 54.284 53.905 54.657 3.6285 0.03739 0.00015467 NaN 30.225 60 33 3 NaN NaN NaN NaN 0 NaN NaN 0 232770 20994 12983 12940 12949 -0.06464697940509723 LCSYTFKPHL 10 Unmodified _LCSYTFKPHL_ 0 0 0 REV__L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|31|1|anti-sense REV__L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 604.8128662109375 2 604.810259 1207.60597 NaN NaN NaN NaN NaN NaN NaN 112.87 1 116.44 115.94 116.94 3.572 0 0 0 0.53105 1 27834 27834 1.4819 0 1 + 20995 28112 12941 12950 25240 25240 0.010466451510183106 LCTNQVREKA 10 Unmodified _LCTNQVREKA_ 0 0 0 REV__ENST00000428134.1_1_17:20536447-20536516:-|nuORF REV__ENST00000428134.1_1_17:20536447-20536516:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 581.3056640625 2 581.305872 1160.59719 0.50128 0.0002914 0.75151 0.00043686 1.2528 0.00072826 581.3064269470433 59.68 0.55677 62.953 62.7 63.257 3.2731 60 36 2 0 0 0 0.56189 1 13898 13898 2.4985 0.19575 1 103080 + 20996 22276 12942 12951 25241 25241 0.02331671514525624 LCVDNQCWF 9 Unmodified _LCVDNQCWF_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|275|3|anti-sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|275|3|anti-sense MSMS UPN47_class_I_Rep_2 3 563.78515625 2 564.23607 1126.45759 NaN NaN NaN NaN NaN NaN NaN 44.152 1 47.508 47.008 48.008 3.3556 0 0 0 0.39518 1 9179 9179 1.8442 0 1 + 20997 29210 12943 12952 25242 25242 -0.1005840909433573 LCVGWIRL 8 Unmodified _LCVGWIRL_ 0 0 0 REV__ENST00000564348.5_1_19:7981897-7982442:+|nuORF REV__ENST00000564348.5_1_19:7981897-7982442:+|nuORF MSMS UPN47_class_I_Rep_3 4 480.2789001464844 2 480.278398 958.542243 NaN NaN NaN NaN NaN NaN NaN 43.98 1 47.222 46.722 47.722 3.2419 0 0 0 0.40625 1 9179 9179 2.3027 0 1 + 20998 23047 12944 12953 25243 25243 0.061313295045806626 LCVLWVLL 8 Unmodified _LCVLWVLL_ 0 0 0 REV__L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|86|2|anti-sense REV__L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|86|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.7929382324219 2 479.793349 957.572146 0.18143 8.705E-05 -0.27505 -0.00013197 -0.09362 -4.4918E-05 479.7930516198913 83.793 0.69711 87.359 86.893 87.59 3.5655 123 83 2 0 0 0 0.82752 1 20895 20895 0.79363 0 1 122200 + 20999 27946 12945 12954 25244 25244 0.09166268449905601 LCWNGQSHTR 10 Unmodified _LCWNGQSHTR_ 0 0 0 REV__ENST00000367161.7_1_1:205116523-205116616:-|nuORF REV__ENST00000367161.7_1_1:205116523-205116616:-|nuORF MSMS UPN47_class_I_Rep_3 4 601.7462158203125 2 601.280189 1200.54582 NaN NaN NaN NaN NaN NaN NaN 33.896 1 37.171 36.671 37.671 3.2748 0 0 0 0.53105 1 6099 6099 1.6526 0.17072 1 + 21000 21923 12946 12955 25245 25245 -0.046426524595290175 LCYLTLKN 8 Unmodified _LCYLTLKN_ 0 0 0 L1MEf_dup8762|chr13:24428772-24429480:-|1.270321518588075|0.1660218917122618|2.94|151.0|43|2|anti-sense L1MEf_dup8762|chr13:24428772-24429480:-|1.270321518588075|0.1660218917122618|2.94|151.0|43|2|anti-sense L1MEf_dup8762|chr13:24428772-24429480:-|1.270321518588075|0.1660218917122618|2.94|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_2 3 484.267333984375 2 484.267696 966.520839 NaN NaN NaN NaN NaN NaN NaN 40.602 1 43.974 43.474 44.474 3.3712 0 0 0 0.40643 1 8102 8102 2.0598 0 1 21001 13330 12947 12956 25246 25246 0.036238996851921 LCYQDFGF 8 Unmodified _LCYQDFGF_ 0 0 0 MER57A-int_dup12|chr1:36016618-36017618:-|1.9208788684399447|0.0664997843883654|4.85|151.0|40|1|anti-sense MER57A-int_dup12|chr1:36016618-36017618:-|1.9208788684399447|0.0664997843883654|4.85|151.0|40|1|anti-sense MER57A-int_dup12|chr1:36016618-36017618:-|1.9208788684399447|0.0664997843883654|4.85|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_2 3 496.71234130859375 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 65.776 1 69.035 68.535 69.535 3.2588 0 0 0 0.4032 1 15761 15761 6.3541 0 1 21002 16115 12948 12957 25247 25247 -0.0850952565397165 LDADYWCSF 9 Unmodified _LDADYWCSF_ 0 0 0 REV__ENSG00000226784|ENST00000458128|PGAM4 REV__ENSG00000226784|ENST00000458128|PGAM4 MSMS UPN47_class_I_Rep_3 4 560.2277221679688 2 560.226225 1118.4379 NaN NaN NaN NaN NaN NaN NaN 82.593 1 85.93 85.43 86.43 3.337 0 0 0 0.29868 1 20702 20702 10.824 4.4698 1 + 21003 21295 12949 12958 25248 25248 -0.11658461833462752 LDAKLVDIK 9 Unmodified _LDAKLVDIK_ 0 0 0 REV__ENSG00000053328|ENST00000338882|METTL24 REV__ENSG00000053328|ENST00000338882|METTL24 MULTI-SECPEP UPN48_class_I_Rep_3 7 508.2581787109375 2 507.813325 1013.6121 0.18476 9.3823E-05 -0.40673 -0.00020654 -0.22197 -0.00011272 507.81295368544363 39.098 0.30713 42.754 42.488 42.795 3.6557 36 30 2 0 0 0 0.12354 1 6785 6785 3.5965 0 1 73747 + 21004 17683 12950 12959 25249 25249 0.10583486654172702 LDAKLVDIK 9 Unmodified _LDAKLVDIK_ 0 0 0 REV__ENSG00000053328|ENST00000338882|METTL24 REV__ENSG00000053328|ENST00000338882|METTL24 MULTI-MATCH UPN48_class_I_Rep_1 5 2 507.813325 1013.6121 0.24684 0.00012535 -1.0953 -0.00055619 -0.84842 -0.00043084 507.8132746924064 39.435 0.083023 42.94 42.882 42.965 3.5048 0.093028 -0.00059404 NaN 3.5965 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 57863 + 21005 17683 12950 12959 0.10583486654172702 LDAREVIPMA 10 Unmodified _LDAREVIPMA_ 0 0 0 nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 MULTI-MSMS UPN48_class_I_Rep_1 5 557.8004760742188 2 557.799891 1113.58523 0.51469 0.00028709 -0.21004 -0.00011716 0.30464 0.00016993 557.8000894329505 69.631 1.0972 73.086 72.636 73.733 3.4548 336 83 6 0 0 0 0.43106 1 16119 16119 17.113 0 1 1567300 21006 4528 12951 12960 25250 25250 0.03298054771335046 LDAREVIPMA 10 Unmodified _LDAREVIPMA_ 0 0 0 nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 MULTI-MSMS UPN48_class_I_Rep_2 6 558.2997436523438 2 557.799891 1113.58523 0.49575 0.00027653 -0.18543 -0.00010343 0.31032 0.0001731 557.8001100570709 69.463 1.187 72.984 72.52 73.707 3.5216 290 97 5 0 0 0 0.43106 1 16204 16204 17.113 2.2746 1 1888800 21007 4528 12951 12960 25251 25251 0.03298054771335046 LDASRVMLK 9 Unmodified _LDASRVMLK_ 0 0 0 REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B MSMS UPN47_class_I_Rep_1 2 516.7815551757812 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 34.092 1 37.782 37.282 38.282 3.6901 0 0 0 0.39428 1 6089 6089 2.0598 0 1 + 21008 19645 12952 12961 25252 25252 0.06522375979534445 LDDADRLLR 9 Unmodified _LDDADRLLR_ 0 0 0 REV__CON__Q03247 REV__CON__Q03247 MULTI-MSMS UPN48_class_I_Rep_1 5 544.3009033203125 2 543.798737 1085.58292 0.45281 0.00024624 -0.16569 -9.0103E-05 0.28712 0.00015613 544.3001076928819 36.944 0.50235 40.451 40.152 40.654 3.507 87 50 2 0 0 0 0.43982 3 6166 6166;6184;6219 5.7319 0 1 177910 + + 21009 17484 12953 12962 25253;25254;25255 25253 0.0435534235787145 LDDADRLLR 9 Unmodified _LDDADRLLR_ 0 0 0 REV__CON__Q03247 REV__CON__Q03247 MULTI-MSMS UPN48_class_I_Rep_2 6 543.7982788085938 2 543.798737 1085.58292 0.45412 0.00024695 -0.39587 -0.00021527 0.058258 3.1681E-05 543.7983854833009 36.626 0.46072 40.328 40.061 40.522 3.7021 84 53 2 0 0 0 0.43982 2 6141 6141;6199 5.7319 0 1 140380 + + 21010 17484 12953 12962 25256;25257 25256 0.0435534235787145 LDDADRLLR 9 Unmodified _LDDADRLLR_ 0 0 0 REV__CON__Q03247 REV__CON__Q03247 MULTI-MSMS UPN48_class_I_Rep_3 7 543.7971801757812 2 543.798737 1085.58292 0.40706 0.00022136 -0.51455 -0.00027981 -0.10749 -5.8452E-05 543.7984457916382 36.65 0.55878 40.313 40.059 40.617 3.663 103 62 2 0 0 0 0.37599 2 6052 6052;6099 9.3831 1.2276 1 152600 + + 21011 17484 12953 12962 25258;25259 25258 0.0435534235787145 LDDDVLLVGA 10 Unmodified _LDDDVLLVGA_ 0 0 0 REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3 REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3 MULTI-MSMS UPN47_class_I_Rep_3 4 515.277587890625 2 515.276772 1028.53899 0.12283 6.3291E-05 -0.43489 -0.00022409 -0.31206 -0.0001608 515.2765911078985 46.169 0.69579 49.413 49.196 49.891 3.2441 67 43 2 0 0 0 0.56033 1 9908 9908 3.5965 0.31518 1 99340 + 21012 19207 12954 12963 25260 25260 0.025863131409323614 LDDIVQHIY 9 Unmodified _LDDIVQHIY_ 0 0 0 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 MSMS UPN48_class_I_Rep_3 7 558.2882690429688 2 558.290214 1114.56587 NaN NaN NaN NaN NaN NaN NaN 50.041 1 53.662 53.162 54.162 3.621 0 0 0 0.38784 1 10110 10110 3.5965 1.098 1 21013 1157 12955 12964 25261 25261 0.01317421752082737 LDDTKNFQF 9 Unmodified _LDDTKNFQF_ 0 0 0 L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|45|2|anti-sense L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|45|2|anti-sense L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_1 2 563.7868041992188 2 564.272021 1126.52949 NaN NaN NaN NaN NaN NaN NaN 44.085 1 47.78 47.28 48.28 3.6951 0 0 0 0.3967 1 9131 9131 1.4819 0.68827 1 21014 12804 12956 12965 25262 25262 -0.028714551446228143 LDEFAFAVFG 10 Unmodified _LDEFAFAVFG_ 0 0 0 REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|271|3|anti-sense REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|271|3|anti-sense MSMS UPN48_class_I_Rep_2 6 558.2723388671875 2 558.274032 1114.53351 NaN NaN NaN NaN NaN NaN NaN 34.321 1 37.995 37.495 38.495 3.6735 0 0 0 0.53105 1 5517 5517 1.8442 0 1 + 21015 29451 12957 12966 25263 25263 -0.019173656509110515 LDEFSKVYF 9 Unmodified _LDEFSKVYF_ 0 0 0 L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|105|1|anti-sense L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|105|1|anti-sense L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|105|1|anti-sense MSMS UPN48_class_I_Rep_3 7 574.2853393554688 2 574.28714 1146.55973 NaN NaN NaN NaN NaN NaN NaN 43.521 1 47.159 46.659 47.659 3.6385 0 0 0 0.39428 1 8108 8108 2.0598 0 1 21016 13878 12958 12967 25264 25264 -0.00769096479439213 LDEFVANEI 9 Unmodified _LDEFVANEI_ 0 0 0 REV__ENSG00000172071|ENST00000303236|EIF2AK3 REV__ENSG00000172071|ENST00000303236|EIF2AK3 MSMS UPN48_class_I_Rep_1 5 525.2613525390625 2 525.261122 1048.50769 NaN NaN NaN NaN NaN NaN NaN 75.94 1 79.44 78.94 79.94 3.4996 0 0 0 0.29913 1 18020 18020 10.8 2.8894 1 + 21017 20435 12959 12968 25265 25265 -0.014622598931964603 LDEKYKKY 8 Unmodified _LDEKYKKY_ 0 0 0 REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|164|3|sense REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|164|3|sense MSMS UPN48_class_I_Rep_1 5 544.2438354492188 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 62.613 1 66.076 65.576 66.576 3.4625 0 0 0 0.40604 1 14028 14028 2.5775 0.73324 1 + 21018 29909 12960 12969 25266 25266 0.03634609757477847 LDEPAVRPR 9 Unmodified _LDEPAVRPR_ 0 0 0 REV__MER5A_dup512|chr1:44503730-44503851:+|1.9217892486854469|0.0017618238774484|10.09|150.0|9|2|anti-sense REV__MER5A_dup512|chr1:44503730-44503851:+|1.9217892486854469|0.0017618238774484|10.09|150.0|9|2|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7969360351562 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 34.786 1 38.46 37.96 38.96 3.6735 0 0 0 0.39428 1 5648 5648 2.0598 0 1 + 21019 31475 12961 12970 25267 25267 0.05371663566097595 LDEQNSMWR 9 Unmodified _LDEQNSMWR_ 0 0 0 L1PB1_dup3334|chr4:102736695-102737473:+|1.319715654471154|0.0474513230611346|4.8|151.0|15|3|sense;L1PBa_dup1160|chr9:21889011-21890978:-|1.6830460164247447|0.0514863118777801|5.03|151.0|1|1|sense L1PB1_dup3334|chr4:102736695-102737473:+|1.319715654471154|0.0474513230611346|4.8|151.0|15|3|sense L1PB1_dup3334|chr4:102736695-102737473:+|1.319715654471154|0.0474513230611346|4.8|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 589.765380859375 2 589.76658 1177.51861 NaN NaN NaN NaN NaN NaN NaN 78.189 1 81.471 80.971 81.971 3.2816 0 0 0 0.39598 1 19490 19490 1.6526 0.32309 1 21020 15086 12962 12971 25268 25268 -0.06305180790559461 LDESQVPDQ 9 Unmodified _LDESQVPDQ_ 0 0 0 ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC MSMS UPN47_class_I_Rep_3 4 515.7377319335938 2 515.738011 1029.46147 NaN NaN NaN NaN NaN NaN NaN 36.794 1 40.041 39.541 40.541 3.247 0 0 0 0.3967 1 6979 6979 1.4819 0 1 21021 5188 12963 12972 25269 25269 -0.0520832479528508 LDFCPCDSLL 10 Unmodified _LDFCPCDSLL_ 0 0 0 L1PA4_dup9603|chr12:70234382-70236308:-|1.2636865540270334|0.2677530154823319|2.24|151.0|88|2|anti-sense L1PA4_dup9603|chr12:70234382-70236308:-|1.2636865540270334|0.2677530154823319|2.24|151.0|88|2|anti-sense L1PA4_dup9603|chr12:70234382-70236308:-|1.2636865540270334|0.2677530154823319|2.24|151.0|88|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.2518310546875 2 563.251385 1124.48822 0.45323 0.00025528 0.15266 8.5988E-05 0.60589 0.00034127 563.2514744277835 42.142 0.47692 45.65 45.469 45.946 3.5079 81 47 2 0 0 0 0.54466 1 7753 7753 6.2058 1.8765 1 111070 21022 14410 12964 12973 25270 25270 -0.06904675499959012 LDFFYLVG 8 Unmodified _LDFFYLVG_ 0 0 0 L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|124|1|anti-sense L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|124|1|anti-sense L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|124|1|anti-sense MSMS UPN47_class_I_Rep_1 2 487.21484375 2 487.255111 972.49567 NaN NaN NaN NaN NaN NaN NaN 93.787 1 97.523 97.023 98.023 3.736 0 0 0 0.40581 1 23317 23317 2.8892 0 1 21023 14644 12965 12974 25271 25271 0.00832168154295232 LDFGLKEWY 9 Unmodified _LDFGLKEWY_ 0 0 0 Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|123|3|anti-sense Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|123|3|anti-sense Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7942504882812 2 585.795132 1169.57571 NaN NaN NaN NaN NaN NaN NaN 54.081 1 57.266 56.766 57.766 3.1856 0 0 0 0.32573 1 12250 12250 9.3831 3.6513 1 21024 33058 12966 12975 25272 25272 -0.0022939024252082163 LDFLCFFF 8 Unmodified _LDFLCFFF_ 0 0 0 REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|83|1|anti-sense REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|83|1|anti-sense MSMS UPN48_class_I_Rep_1 5 526.2529296875 2 526.251514 1050.48848 NaN NaN NaN NaN NaN NaN NaN 60.324 1 63.797 63.297 64.297 3.4737 0 0 0 0.38221 1 13333 13333 14.582 0 1 + 21025 28398 12967 12976 25273 25273 -0.03474887717788988 LDFSSSSRTLI 11 Unmodified _LDFSSSSRTLI_ 0 0 0 L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|169|1|anti-sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|169|1|anti-sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|169|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 613.8246459960938 2 613.324785 1224.63502 0.4956 0.00030396 -0.67533 -0.0004142 -0.17974 -0.00011024 613.324354903487 67.118 0.41685 70.569 70.288 70.704 3.4516 41 25 2 0 0 0 0.2675 2 15367 15367;15408 18.721 2.9826 1 127700 21026 15134 12968 12977 25274;25275 25274 0.03168460981032695 LDFSSSSRTLI 11 Unmodified _LDFSSSSRTLI_ 0 0 0 L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|169|1|anti-sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|169|1|anti-sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|169|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 613.324785 1224.63502 0.50631 0.00031053 -0.55261 -0.00033893 -0.0463 -2.8397E-05 613.3239664356756 67.145 0.063713 70.642 70.591 70.654 3.4964 0.036195 0.0001454 NaN 18.721 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 59018 21027 15134 12968 12977 0.03168460981032695 LDFVGMLHSFL 11 Unmodified _LDFVGMLHSFL_ 0 0 0 L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|145|3|anti-sense L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|145|3|anti-sense L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|145|3|anti-sense MSMS UPN48_class_I_Rep_3 7 639.8338012695312 2 639.831191 1277.64783 NaN NaN NaN NaN NaN NaN NaN 64.047 1 67.555 67.055 68.055 3.5083 0 0 0 0.36307 1 14368 14368 8.1555 1.9497 1 21028 9532 12969 12978 25276 25276 0.020112008395472003 LDFVGMLHSFL 11 Unmodified _LDFVGMLHSFL_ 0 0 0 L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|145|3|anti-sense L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|145|3|anti-sense L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|145|3|anti-sense MSMS UPN48_class_I_Rep_3 7 639.8319702148438 2 639.831191 1277.64783 NaN NaN NaN NaN NaN NaN NaN 64.207 1 67.716 67.216 68.216 3.5083 0 0 0 0.38417 1 14417 14417 4.897 1.6157 1 21029 9532 12969 12978 25277 25277 0.020112008395472003 LDGIKNIHDSW 11 Unmodified _LDGIKNIHDSW_ 0 0 0 Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense;Tigger1_dup8054|chr10:52582858-52584599:+|1.0692548018748078|0.0085109557283275|6.97|143.0|56|3|sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 432.8851013183594 3 433.222693 1296.64625 -0.32131 -0.0001392 -0.89596 -0.00038815 -1.2173 -0.00052735 433.2225515297136 54.203 1.1943 57.522 57.094 58.288 3.3187 123 63 3 0 0 0 22.551 1 12256 12256 1.3296 0.21989 1 348710 21030 33009 12970 12979 25278 25278 0.009792830751393922 LDGIKNIHDSW 11 Unmodified _LDGIKNIHDSW_ 0 0 0 Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense;Tigger1_dup8054|chr10:52582858-52584599:+|1.0692548018748078|0.0085109557283275|6.97|143.0|56|3|sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 433.222693 1296.64625 -0.039364 -1.7053E-05 -1.0165 -0.00044036 -1.0558 -0.00045741 433.22242582218587 53.95 0.90308 57.477 57.048 57.951 3.5278 -0.033482 -0.00025655 NaN 1.3296 128 49 3 NaN NaN NaN NaN 0 NaN NaN 0 217830 21031 33009 12970 12979 0.009792830751393922 LDGIKNIHDSW 11 Unmodified _LDGIKNIHDSW_ 0 0 0 Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense;Tigger1_dup8054|chr10:52582858-52584599:+|1.0692548018748078|0.0085109557283275|6.97|143.0|56|3|sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 433.222693 1296.64625 -0.41899 -0.00018152 -0.61365 -0.00026585 -1.0326 -0.00044737 433.22260948619106 54.347 1.0258 57.533 57.146 58.172 3.1856 0.02224 0.00026698 NaN 1.3296 141 60 3 NaN NaN NaN NaN 0 NaN NaN 0 221530 21032 33009 12970 12979 0.009792830751393922 LDGTEEPKY 9 Unmodified _LDGTEEPKY_ 0 0 0 REV__L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|21|1|sense REV__L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|21|1|sense MSMS UPN48_class_I_Rep_2 6 526.2532958984375 2 526.250754 1050.48696 NaN NaN NaN NaN NaN NaN NaN 60.101 1 63.588 63.088 64.088 3.4868 0 0 0 0.2408 1 13242 13242 13.906 0.39817 1 + 21033 29313 12971 12980 25279 25279 -0.03626850272848969 LDGVLVHSR 9 Unmodified _LDGVLVHSR_ 0 0 0 REV__Charlie4z_dup5345|chr19:7386976-7387086:+|2.3287602580998263|0.0339109509920573|6.1|151.0|6|2|anti-sense REV__Charlie4z_dup5345|chr19:7386976-7387086:+|2.3287602580998263|0.0339109509920573|6.1|151.0|6|2|anti-sense MSMS UPN47_class_I_Rep_1 2 498.2844543457031 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 30.909 1 34.644 34.144 35.144 3.7352 0 0 0 0.39518 1 5114 5114 1.8442 0 1 + 21034 17385 12972 12981 25280 25280 0.05848278537382612 LDGYYTLYYHF 11 Unmodified _LDGYYTLYYHF_ 0 0 0 REV__Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|2|1|sense REV__Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.5704345703125 3 485.559082 1453.65542 -0.37447 -0.00018183 -0.58577 -0.00028442 -0.96024 -0.00046625 485.55877913891095 37.241 0.63462 40.488 40.251 40.886 3.247 89 46 3 0 0 0 0.68024 1 7068 7068 0.50596 0 1 96824 + 21035 32444 12973 12982 25281 25281 -0.05326368359214939 LDHEGHCKL 9 Unmodified _LDHEGHCKL_ 0 0 0 nc|ENSG00000027075|P24723-2|PRKCH;ENSG00000027075|ENST00000332981|PRKCH nc|ENSG00000027075|P24723-2|PRKCH nc|ENSG00000027075|P24723-2|PRKCH MSMS UPN48_class_I_Rep_2 6 526.2532348632812 2 526.253108 1050.49166 NaN NaN NaN NaN NaN NaN NaN 60.243 1 63.73 63.23 64.23 3.4868 0 0 0 0.20399 1 13286 13286 16.149 1.5674 1 21036 826 12974 12983 25282 25282 -0.03156244611091097 LDHFPTSSSL 10 Unmodified _LDHFPTSSSL_ 0 0 0 REV__L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|39|2|anti-sense REV__L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|39|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.271728515625 2 552.272021 1102.52949 0.15693 8.6667E-05 0.014954 8.2587E-06 0.17188 9.4926E-05 552.2718830025102 43.969 1.0854 47.327 46.975 48.061 3.358 138 66 3 0 0 0 0.31342 2 9210 9047;9210 29.082 0.58707 1 244410 + 21037 26645 12975 12984 25283;25284 25284 -0.0176745514461345 LDHFPTSSSL 10 Unmodified _LDHFPTSSSL_ 0 0 0 REV__L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|39|2|anti-sense REV__L1MC2_dup234|chr1:148140823-148141484:+|1.0884915960532482|0.0866168737015338|3.65|150.0|39|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.2721557617188 2 552.272021 1102.52949 0.1741 9.6152E-05 -0.048277 -2.6662E-05 0.12582 6.9489E-05 552.2718516323188 44.137 1.04 47.381 47.01 48.05 3.2441 131 58 3 0 0 0 0.41718 1 9152 9152 18.146 1.9972 1 230310 + 21038 26645 12975 12984 25285 25285 -0.0176745514461345 LDHIMIPL 8 Unmodified _LDHIMIPL_ 0 0 0 ERVL-E-int_dup315|chr1:84537178-84538808:+|4.460123567141673|0.1357230369868221|5.04|151.0|55|3|sense ERVL-E-int_dup315|chr1:84537178-84538808:+|4.460123567141673|0.1357230369868221|5.04|151.0|55|3|sense ERVL-E-int_dup315|chr1:84537178-84538808:+|4.460123567141673|0.1357230369868221|5.04|151.0|55|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 476.27056884765625 2 476.270238 950.525924 0.034927 1.6635E-05 0.16303 7.7645E-05 0.19795 9.428E-05 476.27028651458176 65.984 0.67813 69.169 68.767 69.445 3.1853 51 40 2 0 0 0 0.82752 1 15844 15844 5.2307 0 1 103190 21039 7750 12976 12985 25286 25286 0.048682035478236685 LDHYIHLIH 9 Unmodified _LDHYIHLIH_ 0 0 0 ENSG00000183671|ENST00000621141|CMKLR2 ENSG00000183671|ENST00000621141|CMKLR2 ENSG00000183671|ENST00000621141|CMKLR2 MULTI-MSMS UPN48_class_I_Rep_3 7 581.3173217773438 2 580.81419 1159.61383 0.38609 0.00022425 0.38901 0.00022594 0.7751 0.00045019 580.8142002847543 49.727 0.84748 53.348 53.037 53.884 3.621 92 54 2 0 0 0 0.40174 1 9949 9949 7.9102 7.9102 1 321180 21040 5009 12977 12986 25287 25287 0.040405404628018005 LDIKNQVL 8 Unmodified _LDIKNQVL_ 0 0 0 REV__ENSG00000112210|ENST00000468148|RAB23 REV__ENSG00000112210|ENST00000468148|RAB23 MULTI-MSMS UPN47_class_I_Rep_2 3 471.7845458984375 2 471.784567 941.554582 0.15699 7.4063E-05 -0.086565 -4.084E-05 0.070421 3.3224E-05 471.78452733656195 58.419 0.20336 61.701 61.64 61.844 3.2818 14 11 2 0 0 0 0.82752 1 13519 13519 3.9444 0 1 36575 + 21041 18476 12978 12987 25288 25288 0.08146644448606821 LDILWYRY 8 Unmodified _LDILWYRY_ 0 0 0 REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|60|1|anti-sense REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|60|1|anti-sense MSMS UPN46_class_I_Rep_3 1 571.3056640625 2 571.305667 1140.59678 NaN NaN NaN NaN NaN NaN NaN 77.572 1 77.572 77.072 78.072 0 0 0 0 0.40746 1 18138 18138 0.69038 0 1 + 21042 29175 12979 12988 25289 25289 0.03210619856986341 LDIPKFAA 8 Unmodified _LDIPKFAA_ 0 0 0 REV__ENST00000576431.5_1_17:79781125-79781194:-|nuORF REV__ENST00000576431.5_1_17:79781125-79781194:-|nuORF MSMS UPN47_class_I_Rep_3 4 437.75335693359375 2 437.755278 873.496004 NaN NaN NaN NaN NaN NaN NaN 42.481 1 45.72 45.22 46.22 3.2394 0 0 0 0.39819 1 8720 8720 8.5933 0 1 + 21043 23109 12980 12989 25290 25290 0.05419587874132503 LDITKWSY 8 Unmodified _LDITKWSY_ 0 0 0 ENST00000490902.1_1_1:160768767-160771704:+|nuORF;ENST00000471816.1_1_1:160766002-160783471:+|nuORF;ENST00000474998.1_1_1:160766002-160769898:+|nuORF;nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9 ENST00000490902.1_1_1:160768767-160771704:+|nuORF ENST00000490902.1_1_1:160768767-160771704:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.2691650390625 2 513.26875 1024.52295 0.24626 0.0001264 1.0616 0.00054488 1.3078 0.00067128 513.2690789328846 73.32 0.95909 76.706 76.269 77.228 3.3861 127 77 2 0 0 0 0.82752 1 18024 18024 30.225 30.225 1 235870 21044 2379 12981 12990 25291 25291 0.011666516946661432 LDITKWSY 8 Unmodified _LDITKWSY_ 0 0 0 ENST00000490902.1_1_1:160768767-160771704:+|nuORF;ENST00000471816.1_1_1:160766002-160783471:+|nuORF;ENST00000474998.1_1_1:160766002-160769898:+|nuORF;nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9 ENST00000490902.1_1_1:160768767-160771704:+|nuORF ENST00000490902.1_1_1:160768767-160771704:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 513.26875 1024.52295 0.10556 5.4183E-05 1.5454 0.00079322 1.651 0.0008474 513.2696550728662 73.3 1.1068 76.597 76.146 77.253 3.2971 -0.046257 3.5448E-05 NaN 30.225 162 95 3 NaN NaN NaN NaN 0 NaN NaN 0 275170 21045 2379 12981 12990 0.011666516946661432 LDITKWSY 8 Unmodified _LDITKWSY_ 0 0 0 ENST00000490902.1_1_1:160768767-160771704:+|nuORF;ENST00000471816.1_1_1:160766002-160783471:+|nuORF;ENST00000474998.1_1_1:160766002-160769898:+|nuORF;nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9 ENST00000490902.1_1_1:160768767-160771704:+|nuORF ENST00000490902.1_1_1:160768767-160771704:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 513.26875 1024.52295 0.28445 0.000146 1.8728 0.00096124 2.1572 0.0011072 513.2695755127335 73.391 1.0661 76.628 76.148 77.214 3.2363 -0.016195 0.0003715 NaN 30.225 166 97 2 NaN NaN NaN NaN 0 NaN NaN 0 345080 21046 2379 12981 12990 0.011666516946661432 LDITRTDFY 9 Unmodified _LDITRTDFY_ 0 0 0 L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|42|1|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|42|1|anti-sense L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.7894287109375 2 572.287671 1142.56079 0.43341 0.00024803 0.0906 5.1849E-05 0.52401 0.00029988 572.287567917814 64.779 0.69043 67.959 67.626 68.317 3.1795 113 54 3 0 0 0 0.41259 1 15595 15595 7.2892 0.56607 1 186980 21047 13425 12982 12991 25292 25292 -0.004788821105421448 LDIVHHCWD 9 Unmodified _LDIVHHCWD_ 0 0 0 REV__MER65A_dup832|chrX:2638773-2639086:-|1.3365872550056446|0.028691641132446|5.54|150.0|1|1|sense REV__MER65A_dup832|chrX:2638773-2639086:-|1.3365872550056446|0.028691641132446|5.54|150.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 569.2614135742188 2 569.260933 1136.50731 NaN NaN NaN NaN NaN NaN NaN 118.91 1 118.91 118.41 119.41 0 0 0 0 0.39518 1 29535 29535 1.8442 1.1539 1 + 21048 31525 12983 12992 25293 25293 -0.05547958094052774 LDKAVIPCK 9 Unmodified _LDKAVIPCK_ 0 0 0 HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|162|3|anti-sense HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|162|3|anti-sense HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|162|3|anti-sense MSMS UPN47_class_I_Rep_2 3 493.79779052734375 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 55.525 1 58.835 58.335 59.335 3.3102 0 0 0 0.38639 1 12640 12640 3.9444 0 1 21049 8192 12984 12993 25294 25294 0.06967875093585008 LDKEERPY 8 Unmodified _LDKEERPY_ 0 0 0 L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|101|3|sense L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|101|3|sense L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|101|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.2667236328125 2 525.266739 1048.51892 0.017767 9.3323E-06 -0.25997 -0.00013655 -0.2422 -0.00012722 525.2663940034527 44.508 0.64949 48.203 47.885 48.535 3.6951 102 46 3 0 0 0 0.82752 1 9184 9184 4.3292 4.3292 1 205130 21050 13601 12985 12994 25295 25295 -0.00339437799038933 LDKIKTQIR 9 Unmodified _LDKIKTQIR_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 557.745849609375 2 557.850773 1113.68699 0.61425 0.00034266 -0.72616 -0.00040509 -0.11191 -6.2431E-05 557.8504024652807 54.927 0.36058 58.483 58.382 58.742 3.5559 30 19 2 0 0 0 0.11309 1 11694 11694 5.7319 0 1 125810 + 21051 19015 12986 12995 25296 25296 0.1346966918540602 LDKIKTQIR 9 Unmodified _LDKIKTQIR_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 557.745849609375 2 557.850773 1113.68699 0.2809 0.0001567 -0.53501 -0.00029845 -0.25411 -0.00014176 557.8504587336996 55.059 0.42371 58.628 58.433 58.856 3.5694 37 23 2 0 0 0 0.12157 1 11605 11605 6.2058 0 1 156200 + 21052 19015 12986 12995 25297 25297 0.1346966918540602 LDKISSIAFT 10 Unmodified _LDKISSIAFT_ 0 0 0 ENST00000589958.1_1_19:56853805-56854033:-|nuORF ENST00000589958.1_1_19:56853805-56854033:-|nuORF ENST00000589958.1_1_19:56853805-56854033:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 547.8078002929688 2 547.808239 1093.60193 -0.084502 -4.6291E-05 -0.36054 -0.00019751 -0.44504 -0.0002438 547.8077817055034 37.315 0.75647 40.562 40.24 40.997 3.247 85 56 2 0 0 0 0.56354 1 7042 7042 1.3295 0 1 99374 21053 7606 12987 12996 25298 25298 0.05886878928936312 LDKKTVFKY 9 Unmodified _LDKKTVFKY_ 0 0 0 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MSMS UPN48_class_I_Rep_3 7 571.3336791992188 2 571.334424 1140.6543 0.38419 0.0002195 -0.15811 -9.0333E-05 0.22608 0.00012917 571.3342499265297 44.367 0.79704 48.004 47.586 48.383 3.6372 89 54 2 0 0 0 0.49026 1 8286 8286 1.6526 1.0511 1 158100 + 21054 18579 12988 12997 25299 25299 0.08959462062580315 LDKLDRTL 8 Unmodified _LDKLDRTL_ 0 0 0 REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|25|1|sense REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|25|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 486.7591552734375 2 487.287474 972.560395 -0.29873 -0.00014557 0.33763 0.00016452 0.038893 1.8952E-05 487.2875842320862 31.709 0.80768 35.438 35.158 35.966 3.7293 131 62 3 0 0 0 0.72333 1 5331 5331 10.824 0 1 363490 + 21055 29784 12989 12998 25300 25300 0.07301742960294177 LDKLLQNNY 9 Unmodified _LDKLLQNNY_ 0 0 0 ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5 ENSG00000143248|ENST00000313961|RGS5 ENSG00000143248|ENST00000313961|RGS5 MSMS UPN47_class_I_Rep_1 2 560.8051147460938 2 560.803488 1119.59242 NaN NaN NaN NaN NaN NaN NaN 77.013 1 80.428 79.928 80.928 3.4149 0 0 0 0.38916 1 19084 19084 3.2813 0 1 21056 3282 12990 12999 25301 25301 0.03741110643431966 LDKLTQVS 8 Unmodified _LDKLTQVS_ 0 0 0 ENST00000465669.1_1_2:204359944-204399920:-|nuORF ENST00000465669.1_1_2:204359944-204399920:-|nuORF ENST00000465669.1_1_2:204359944-204399920:-|nuORF MSMS UPN48_class_I_Rep_1 5 452.2625427246094 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 59.273 1 62.753 62.253 63.253 3.4801 0 0 0 0.40659 1 13009 13009 1.8442 0 1 21057 6891 12991 13000 25302 25302 0.05214365177619129 LDKRLLNI 8 Unmodified _LDKRLLNI_ 0 0 0 L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|109|1|anti-sense L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|109|1|anti-sense L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|109|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 492.8135681152344 2 492.813659 983.612765 -0.26865 -0.00013239 -0.41602 -0.00020502 -0.68466 -0.00033741 492.8135862193846 36.67 0.58721 40.339 40.104 40.691 3.6692 81 49 2 0 0 0 0.82752 1 6923 6923 4.3292 0 1 86585 21058 10930 12992 13001 25303 25303 0.12030326093884014 LDKSIKVVKK 10 Unmodified _LDKSIKVVKK_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS UPN46_class_I_Rep_3 1 579.3624267578125 2 579.384448 1156.75434 NaN NaN NaN NaN NaN NaN NaN 109.74 1 109.74 109.24 110.24 0 0 0 0 0.53105 1 26982 26982 2.9952 0.26005 1 21059 6781 12993 13002 25304 25304 0.1822369939636701 LDKSIVIR 8 Unmodified _LDKSIVIR_ 0 0 0 nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF nc|ENSG00000108883|Q15029-2|EFTUD2 nc|ENSG00000108883|Q15029-2|EFTUD2 MULTI-MSMS UPN47_class_I_Rep_3 4 472.2999572753906 2 472.300384 942.586216 -0.86679 -0.00040939 -0.18753 -8.8571E-05 -1.0543 -0.00049796 472.3001900445459 14.246 0.56478 17.616 17.478 18.043 3.3697 141 67 3 0 0 0 0.82752 1 497 497 15.847 0 1 192840 21060 1882 12994 13003 25305 25305 0.11262637202571568 LDKSSETWI 9 Unmodified _LDKSSETWI_ 0 0 0 REV__ENSG00000122584|ENST00000405863|NXPH1 REV__ENSG00000122584|ENST00000405863|NXPH1 MULTI-MSMS UPN47_class_I_Rep_1 2 539.774169921875 2 539.774396 1077.53424 -0.013043 -7.0405E-06 -0.21033 -0.00011353 -0.22337 -0.00012057 539.7741429850432 39.311 0.52277 42.976 42.651 43.173 3.6652 61 35 2 0 0 0 0.43153 1 7684 7684 6.2058 0.97511 1 86354 + 21061 18752 12995 13004 25306 25306 -0.0014257100183385774 LDKVLQQF 8 Unmodified _LDKVLQQF_ 0 0 0 ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF;ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENST00000564465.1_1_16:68267455-68269590:-|nuORF ENST00000564465.1_1_16:68267455-68269590:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.77191162109375 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 43.808 1 47.05 46.55 47.55 3.2419 0 0 0 0.40404 1 9126 9126 5.2307 0 1 21062 1643 12996 13005 25307 25307 0.0593864444861083 LDKWGGVRR 9 Unmodified _LDKWGGVRR_ 0 0 0 REV__ENST00000524358.5_1_8:17103380-17104091:-|nuORF REV__ENST00000524358.5_1_8:17103380-17104091:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 543.8119506835938 2 543.811982 1085.60941 0.01113 6.0528E-06 -1.2484 -0.00067891 -1.2373 -0.00067286 543.8112167339688 37.553 0.45539 40.952 40.759 41.214 3.3988 60 34 2 0 0 0 0.47197 1 7176 7176 3.5965 0.31518 1 74486 + 21063 22803 12997 13006 25308 25308 0.07003076039904954 LDKYVFVRK 9 Unmodified _LDKYVFVRK_ 0 0 0 REV__L1ME1_dup23467|chr13:28214110-28214452:+|1.8962824681910333|0.0068450307766985|8.11|151.0|7|2|sense REV__L1ME1_dup23467|chr13:28214110-28214452:+|1.8962824681910333|0.0068450307766985|8.11|151.0|7|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.849853515625 2 584.347866 1166.68118 0.15685 9.1656E-05 -0.0099412 -5.8091E-06 0.14691 8.5847E-05 584.3477493758362 25.107 0.10669 25.107 25.066 25.173 0 16 9 2 0 0 0 0.48846 1 3391 3391 1.8442 0 1 97234 + 21064 27693 12998 13007 25309 25309 0.10450570673742732 LDLAFNLYCC 10 Unmodified _LDLAFNLYCC_ 0 0 0 L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|245|3|anti-sense L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|245|3|anti-sense L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|245|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.7672119140625 2 587.767203 1173.51985 0.45126 0.00026524 -0.18005 -0.00010583 0.27121 0.00015941 587.7669432209999 72.118 0.48122 75.591 75.419 75.9 3.4732 54 44 2 0 0 0 0.56078 1 16869 16869 3.2813 1.4371 1 83951 21065 13561 12999 13008 25310 25310 -0.05996682745990256 LDLALHQSW 9 Unmodified _LDLALHQSW_ 0 0 0 REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 541.7850952148438 2 541.785099 1081.55564 0.30177 0.00016349 -0.73602 -0.00039876 -0.43425 -0.00023527 541.7851011250906 51.36 0.28951 54.954 54.757 55.047 3.5933 17 13 2 0 0 0 0.46869 1 11334 11334 3.9444 1.3669 1 38718 + 21066 22767 13000 13009 25311 25311 0.01812858817538654 LDLFSLLVW 9 Unmodified _LDLFSLLVW_ 0 0 0 REV__L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|32|2|anti-sense REV__L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.316650390625 2 553.318243 1104.62193 NaN NaN NaN NaN NaN NaN NaN 61.223 1 64.691 64.191 65.191 3.4678 0 0 0 0.26661 1 13604 13604 12.532 2.9876 1 + 21067 28635 13001 13010 25312 25312 0.07380674659566466 LDLFSLLVW 9 Unmodified _LDLFSLLVW_ 0 0 0 REV__L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|32|2|anti-sense REV__L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.3151245117188 2 553.318243 1104.62193 NaN NaN NaN NaN NaN NaN NaN 61.512 1 64.98 64.48 65.48 3.4678 0 0 0 0.26661 1 13691 13691 12.532 2.9876 1 + 21068 28635 13001 13010 25313 25313 0.07380674659566466 LDLGHVYVI 9 Unmodified _LDLGHVYVI_ 0 0 0 REV__L1MB7_dup16741|chr13:49029725-49031104:+|1.9235149083660008|0.0810325097974978|4.57|151.0|72|2|anti-sense REV__L1MB7_dup16741|chr13:49029725-49031104:+|1.9235149083660008|0.0810325097974978|4.57|151.0|72|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.3056030273438 2 514.792392 1027.57023 0.27305 0.00014057 -0.060801 -3.13E-05 0.21225 0.00010927 514.7923183142335 67.046 0.88669 70.237 69.802 70.689 3.1914 102 67 2 0 0 0 0.46434 1 16337 16337 4.3292 0 1 229230 + 21069 26161 13002 13011 25314 25314 0.057549309656678815 LDLGIKTSL 9 Unmodified _LDLGIKTSL_ 0 0 0 ENST00000425030.1_1_2:201987361-201987433:+|nuORF ENST00000425030.1_1_2:201987361-201987433:+|nuORF ENST00000425030.1_1_2:201987361-201987433:+|nuORF MSMS UPN47_class_I_Rep_2 3 480.2918395996094 2 480.292225 958.569897 NaN NaN NaN NaN NaN NaN NaN 71.779 1 75.069 74.569 75.569 3.2899 0 0 0 0.15288 1 17564 17564 19.362 0 1 21070 6698 13003 13012 25315 25315 0.08895511245816579 LDLGIKTSL 9 Unmodified _LDLGIKTSL_ 0 0 0 ENST00000425030.1_1_2:201987361-201987433:+|nuORF ENST00000425030.1_1_2:201987361-201987433:+|nuORF ENST00000425030.1_1_2:201987361-201987433:+|nuORF MSMS UPN47_class_I_Rep_2 3 480.292236328125 2 480.292225 958.569897 NaN NaN NaN NaN NaN NaN NaN 71.94 1 75.23 74.73 75.73 3.2899 0 0 0 0.21832 1 17609 17609 15.248 0 1 21071 6698 13003 13012 25316 25316 0.08895511245816579 LDLHLKTQ 8 Unmodified _LDLHLKTQ_ 0 0 0 Tigger13a_dup1196|chr6:37909892-37910119:-|1.018673371019155|0.0007679304636823|10.37|151.0|7|3|sense Tigger13a_dup1196|chr6:37909892-37910119:-|1.018673371019155|0.0007679304636823|10.37|151.0|7|3|sense Tigger13a_dup1196|chr6:37909892-37910119:-|1.018673371019155|0.0007679304636823|10.37|151.0|7|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.2822265625 2 484.282192 966.549831 -0.17567 -8.5072E-05 0.45141 0.00021861 0.27574 0.00013354 484.28224485549583 35.46 0.66858 38.872 38.711 39.38 3.4114 87 42 3 0 0 0 0.82752 1 6574 6574 26.884 0 1 87975 21072 33226 13004 13013 25317 25317 0.06521760305861335 LDLIIRSYFA 10 Unmodified _LDLIIRSYFA_ 0 0 0 REV__L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|133|1|anti-sense REV__L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|133|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 404.5670471191406 3 404.23253 1209.67576 0.091932 3.7162E-05 0.067873 2.7437E-05 0.15981 6.4599E-05 404.56683186237757 60.719 1.273 64.232 63.643 64.916 3.5128 359 116 4 0 0 0 0.54148 1 13235 13235 3.8459 0 1 4847500 + 21073 26719 13005 13014 25318 25318 0.07930847091279247 LDLKFSLLK 9 Unmodified _LDLKFSLLK_ 0 0 0 L1ME1_dup10518|chr5:138408405-138408828:+|1.5735729331110375|0.0288532572632778|5.77|151.0|31|2|anti-sense L1ME1_dup10518|chr5:138408405-138408828:+|1.5735729331110375|0.0288532572632778|5.77|151.0|31|2|anti-sense L1ME1_dup10518|chr5:138408405-138408828:+|1.5735729331110375|0.0288532572632778|5.77|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.8394165039062 2 538.839342 1075.66413 0.27561 0.00014851 0.028096 1.5139E-05 0.30371 0.00016365 538.8391255140384 50.955 0.78648 54.548 54.152 54.938 3.5932 65 36 3 0 0 0 0.23293 1 11245 11245 18.146 0 1 140080 21074 12166 13006 13015 25319 25319 0.12932650067932627 LDLKFSLLK 9 Unmodified _LDLKFSLLK_ 0 0 0 L1ME1_dup10518|chr5:138408405-138408828:+|1.5735729331110375|0.0288532572632778|5.77|151.0|31|2|anti-sense L1ME1_dup10518|chr5:138408405-138408828:+|1.5735729331110375|0.0288532572632778|5.77|151.0|31|2|anti-sense L1ME1_dup10518|chr5:138408405-138408828:+|1.5735729331110375|0.0288532572632778|5.77|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 538.8391723632812 2 538.839342 1075.66413 0.44476 0.00023965 -0.5044 -0.00027179 -0.059642 -3.2137E-05 538.8390067448647 51.225 0.79747 54.563 54.277 55.075 3.3386 72 40 2 0 0 0 0.17897 1 11308 11308 22.736 4.5899 1 152740 21075 12166 13006 13015 25320 25320 0.12932650067932627 LDLKGTLTV 9 Unmodified _LDLKGTLTV_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|146|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|146|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|146|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.7263488769531 2 480.292225 958.569897 0.10968 5.2677E-05 -0.38074 -0.00018287 -0.27107 -0.00013019 480.29194855940705 71.663 0.45229 75.038 74.697 75.15 3.3751 55 35 2 0 0 0 0.47493 1 17387 17387 3.2813 0 1 120710 21076 9291 13007 13016 25321 25321 0.0889551124580521 LDLKNHSL 8 Unmodified _LDLKNHSL_ 0 0 0 REV__nc|ENSG00000239732|Q9NR96-2|TLR9 REV__nc|ENSG00000239732|Q9NR96-2|TLR9 MULTI-MSMS UPN47_class_I_Rep_2 3 470.26593017578125 2 470.266542 938.51853 -0.33125 -0.00015578 0.11557 5.4348E-05 -0.21569 -0.00010143 470.26652464323325 23.43 0.70436 26.875 26.558 27.263 3.4447 127 66 3 0 0 0 0.82752 2 2887 2887;2961 19.257 2.3067 1 156120 + 21077 21324 13008 13017 25322;25323 25322 0.0468118727176261 LDLKNHSL 8 Unmodified _LDLKNHSL_ 0 0 0 REV__nc|ENSG00000239732|Q9NR96-2|TLR9 REV__nc|ENSG00000239732|Q9NR96-2|TLR9 MULTI-MSMS UPN47_class_I_Rep_3 4 470.26617431640625 2 470.266542 938.51853 -0.74743 -0.00035149 0.30512 0.00014349 -0.44231 -0.00020801 470.26670759346985 23.683 0.68882 27.034 26.674 27.363 3.3509 91 54 2 0 0 0 0.82752 1 3074 3074 16.149 1.3108 1 110980 + 21078 21324 13008 13017 25324 25324 0.0468118727176261 LDLKQLKT 8 Unmodified _LDLKQLKT_ 0 0 0 REV__ENSG00000255150|ENST00000527879|EID3 REV__ENSG00000255150|ENST00000527879|EID3 MSMS UPN47_class_I_Rep_2 3 479.7912292480469 2 479.800217 957.585882 NaN NaN NaN NaN NaN NaN NaN 31.632 1 35.101 34.601 35.601 3.4691 0 0 0 0.40625 1 5379 5379 2.3027 0 1 + 21079 21377 13009 13018 25325 25325 0.1053921748269886 LDLLKISYG 9 Unmodified _LDLLKISYG_ 0 0 0 nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2 nc|ENSG00000165995|Q08289-9|CACNB2 nc|ENSG00000165995|Q08289-9|CACNB2 MULTI-MSMS UPN47_class_I_Rep_1 2 511.2999267578125 2 511.30005 1020.58555 0.13472 6.888E-05 -0.20746 -0.00010607 -0.072741 -3.7192E-05 511.2998671830187 51.429 0.55198 55.022 54.658 55.21 3.5932 46 27 2 0 0 0 0.47197 1 11384 11384 3.5965 1.7523 1 72551 21080 16739 13010 13019 25326 25326 0.07607797762852897 LDLLLRPGS 9 Unmodified _LDLLLRPGS_ 0 0 0 REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1 REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1 MULTI-MSMS UPN47_class_I_Rep_3 4 492.29669189453125 2 492.297842 982.581131 -0.19182 -9.4434E-05 -0.021145 -1.041E-05 -0.21297 -0.00010484 492.2978362008995 41.589 0.88593 44.826 44.459 45.345 3.2372 129 79 2 0 0 0 0.43153 1 8386 8386 6.2058 0 1 166480 + 21081 20662 13011 13020 25327 25327 0.08914333339953373 LDLLLRPGS 9 Unmodified _LDLLLRPGS_ 0 0 0 REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1 REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 492.297842 982.581131 -0.24274 -0.0001195 0.11806 5.8119E-05 -0.12468 -6.1381E-05 492.2977987376529 41.088 0.84727 44.76 44.383 45.23 3.6719 -0.064024 3.0621E-05 NaN 6.2058 133 68 3 NaN NaN NaN NaN 0 NaN NaN 0 225360 + 21082 20662 13011 13020 0.08914333339953373 LDLLLRPGS 9 Unmodified _LDLLLRPGS_ 0 0 0 REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1 REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 492.297842 982.581131 -0.10609 -5.2226E-05 0.19752 9.7237E-05 0.091431 4.5011E-05 492.29779601194224 41.52 0.86394 44.885 44.504 45.368 3.3655 0.061515 0.00010886 NaN 6.2058 139 67 3 NaN NaN NaN NaN 0 NaN NaN 0 162550 + 21083 20662 13011 13020 0.08914333339953373 LDLLLRRPRD 10 Unmodified _LDLLLRRPRD_ 0 0 0 REV__ENSG00000140067|ENST00000556222|FAM181A REV__ENSG00000140067|ENST00000556222|FAM181A MULTI-MSMS UPN48_class_I_Rep_2 6 422.9271240234375 3 422.926211 1265.7568 0.15846 6.7016E-05 1.4592 0.00061712 1.6176 0.00068413 422.9267471113362 59.845 0.2281 63.332 63.194 63.422 3.4868 26 18 2 0 0 0 0.56296 1 13168 13168 1.7423 0.28716 1 239170 + 21084 19329 13012 13021 25328 25328 0.13455547854027827 LDLLMYFPH 9 Unmodified _LDLLMYFPH_ 0 0 0 REV__L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|76|2|anti-sense REV__L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|76|2|anti-sense MSMS UPN47_class_I_Rep_2 3 574.7954711914062 2 574.794078 1147.5736 NaN NaN NaN NaN NaN NaN NaN 74.444 1 77.757 77.257 78.257 3.3127 0 0 0 0.34056 1 18345 18345 8.5933 0 1 + 21085 28491 13013 13022 25329 25329 0.005718577480365639 LDLNIKNYK 9 Unmodified _LDLNIKNYK_ 0 0 0 L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|21|3|sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|21|3|sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|21|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.8216552734375 2 560.821681 1119.62881 -0.032823 -1.8408E-05 -0.32742 -0.00018362 -0.36024 -0.00020203 560.8215312795834 40.221 0.6566 43.459 43.033 43.689 3.2372 56 41 2 0 0 0 0.49026 1 8085 8085 1.6526 0 1 80831 21086 9086 13014 13023 25330 25330 0.07377987540121467 LDLPIWALVC 10 Unmodified _LDLPIWALVC_ 0 0 0 REV__L1MDa_dup45|chr1:54643773-54644368:-|1.3598297911510646|0.3940636984537499|1.79|151.0|32|2|anti-sense REV__L1MDa_dup45|chr1:54643773-54644368:-|1.3598297911510646|0.3940636984537499|1.79|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_3 7 571.8179321289062 2 571.817553 1141.62055 NaN NaN NaN NaN NaN NaN NaN 71.339 1 74.857 74.357 75.357 3.5185 0 0 0 0.53105 1 16559 16559 1.8442 0.19162 1 + 21087 27526 13015 13024 25331 25331 0.055407172991408515 LDLPLVWK 8 Unmodified _LDLPLVWK_ 0 0 0 ENST00000522782.5_1_5:153429160-153429226:+|nuORF ENST00000522782.5_1_5:153429160-153429226:+|nuORF ENST00000522782.5_1_5:153429160-153429226:+|nuORF MSMS UPN47_class_I_Rep_2 3 492.3015441894531 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 47.16 1 50.511 50.011 51.011 3.3515 0 0 0 0.40604 1 10100 10100 2.5775 0 1 21088 7242 13016 13025 25332 25332 0.09316422833660454 LDLRADRLE 9 Unmodified _LDLRADRLE_ 0 0 0 L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|28|3|sense L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|28|3|sense L1MA6_dup4727|chr15:55273439-55274495:+|2.419472219947843|0.0893886492815056|4.76|151.0|28|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.8070678710938 2 550.806562 1099.59857 -0.024504 -1.3497E-05 0.4212 0.000232 0.39669 0.0002185 550.8068014163662 31.778 0.43771 35.508 35.32 35.758 3.7293 52 33 2 0 0 0 0.47763 1 5347 5347 2.9952 0 1 101240 21089 9987 13017 13026 25333 25333 0.052756288749378655 LDLRINLK 8 Unmodified _LDLRINLK_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN47_class_I_Rep_3 4 492.81341552734375 2 492.813659 983.612765 -0.3113 -0.00015341 -0.41844 -0.00020621 -0.72974 -0.00035963 492.813617174702 37.145 0.6959 40.392 40.148 40.844 3.247 76 52 2 0 0 0 0.82752 1 7179 7179 2.3027 0 1 108520 21090 2611 13018 13027 25334 25334 0.12030326093872645 LDLRTGTV 8 Unmodified _LDLRTGTV_ 0 0 0 REV__L1MEc_dup11054|chrX:96798116-96799410:-|1.0285748774855732|0.0090424418660309|6.83|148.0|1|1|sense REV__L1MEc_dup11054|chrX:96798116-96799410:-|1.0285748774855732|0.0090424418660309|6.83|148.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 437.7533264160156 2 437.753267 873.491981 NaN NaN NaN NaN NaN NaN NaN 42.192 1 45.553 45.053 46.053 3.3611 0 0 0 0.38444 1 8579 8579 13.906 0 1 + 21091 28350 13019 13028 25335 25335 0.05017498380436791 LDLRTGTV 8 Unmodified _LDLRTGTV_ 0 0 0 REV__L1MEc_dup11054|chrX:96798116-96799410:-|1.0285748774855732|0.0090424418660309|6.83|148.0|1|1|sense REV__L1MEc_dup11054|chrX:96798116-96799410:-|1.0285748774855732|0.0090424418660309|6.83|148.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 437.75323486328125 2 437.753267 873.491981 NaN NaN NaN NaN NaN NaN NaN 42.324 1 45.564 45.064 46.064 3.2394 0 0 0 0.367 1 8672 8672 18.146 0 1 + 21092 28350 13019 13028 25336 25336 0.05017498380436791 LDLSGFFLW 9 Unmodified _LDLSGFFLW_ 0 0 0 L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|34|1|anti-sense L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|34|1|anti-sense L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 549.2882080078125 2 549.286943 1096.55933 NaN NaN NaN NaN NaN NaN NaN 38.365 1 42.081 41.581 42.581 3.7164 0 0 0 0.35339 1 6677 6677 7.9102 0 1 21093 14835 13020 13029 25337 25337 0.014915285913730258 LDLSHFLLWV 10 Unmodified _LDLSHFLLWV_ 0 0 0 L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|289|2|anti-sense L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|289|2|anti-sense L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|289|2|anti-sense MSMS UPN48_class_I_Rep_2 6 621.8473510742188 2 621.847699 1241.68084 NaN NaN NaN NaN NaN NaN NaN 40.4 1 44.142 43.642 44.642 3.7413 0 0 0 0.53105 1 7267 7267 1.4819 0 1 21094 14800 13021 13030 25338 25338 0.06967150953892087 LDLSPCQIS 9 Unmodified _LDLSPCQIS_ 0 0 0 REV__L1MC4_dup16255|chr11:11916394-11916857:+|1.1220913504062984|0.1577283983394289|2.83|151.0|28|3|anti-sense REV__L1MC4_dup16255|chr11:11916394-11916857:+|1.1220913504062984|0.1577283983394289|2.83|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_2 3 488.2529602050781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 58.012 1 61.304 60.804 61.804 3.2912 0 0 0 0.29868 1 13397 13397 10.824 2.2306 1 + 21095 26830 13022 13031 25339 25339 -0.013975849367511728 LDLSQKKTF 9 Unmodified _LDLSQKKTF_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|51|1|sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|51|1|sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|51|1|sense MSMS UPN48_class_I_Rep_1 5 540.2921142578125 2 540.308406 1078.60226 NaN NaN NaN NaN NaN NaN NaN 66.834 1 70.285 69.785 70.785 3.4516 0 0 0 0.29868 1 15312 15312 10.824 0 1 21096 9732 13023 13032 25340 25340 0.06610298648797652 LDLTALLDFRI 11 Unmodified _LDLTALLDFRI_ 0 0 0 THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|9|1|sense THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|9|1|sense THE1B-int_dup2467|chr9:41498351-41499894:-|1.0635497154628375|0.2558461805893844|2.06|149.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 645.8446655273438 2 645.37682 1288.73909 NaN NaN NaN NaN NaN NaN NaN 53.41 1 57.02 56.52 57.52 3.6098 0 0 0 0.38417 1 11191 11191 5.7319 0 1 21097 32912 13024 13033 25341 25341 0.10626787808519111 LDLTELKR 8 Unmodified _LDLTELKR_ 0 0 0 REV__nc|ENSG00000082258|O60583-2|CCNT2 REV__nc|ENSG00000082258|O60583-2|CCNT2 MULTI-MSMS UPN47_class_I_Rep_1 2 494.2956848144531 2 494.295299 986.576045 -0.25673 -0.0001269 -0.44123 -0.0002181 -0.69796 -0.000345 494.2951404488951 39.007 0.56945 42.672 42.401 42.971 3.6652 63 35 2 0 0 0 0.82752 2 7543 7543;7592 9.3831 0 1 74198 + 21098 17919 13025 13034 25342;25343 25342 0.08222029477337855 LDLVKRKE 8 Unmodified _LDLVKRKE_ 0 0 0 REV__MER44C_dup797|chr18:13048095-13048804:+|1.1283165732316445|0.1540639234444422|2.87|150.0|14|2|sense REV__MER44C_dup797|chr18:13048095-13048804:+|1.1283165732316445|0.1540639234444422|2.87|150.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 500.81060791015625 2 500.811116 999.60768 NaN NaN NaN NaN NaN NaN NaN 61.585 1 64.953 64.453 65.453 3.3681 0 0 0 0.40604 1 14449 14449 2.5775 0 1 + 21099 31325 13026 13035 25344 25344 0.10786022231275183 LDLVRKLQ 8 Unmodified _LDLVRKLQ_ 0 0 0 nc|ENSG00000157107|Q0JRZ9-2|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2 nc|ENSG00000157107|Q0JRZ9-2|FCHO2 nc|ENSG00000157107|Q0JRZ9-2|FCHO2 MULTI-MSMS UPN47_class_I_Rep_2 3 492.8136901855469 2 492.813659 983.612765 0.20021 9.8664E-05 0.01353 6.6677E-06 0.21374 0.00010533 492.81360941456836 48.347 0.94955 51.697 51.333 52.282 3.3492 108 49 3 0 0 0 0.82752 1 10426 10426 42.095 2.1449 1 294600 21100 3750 13027 13036 25345 25345 0.12030326093884014 LDMTLPLPM 9 Unmodified _LDMTLPLPM_ 0 0 0 REV__MLT1D_dup324|chr1:43680460-43680940:-|1.1393895159260137|0.0349930160658443|5.03|150.0|3|1|sense REV__MLT1D_dup324|chr1:43680460-43680940:-|1.1393895159260137|0.0349930160658443|5.03|150.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.770751953125 2 515.769214 1029.52388 0.036507 1.8829E-05 0.50808 0.00026205 0.54458 0.00028088 515.769199140766 49.043 0.53082 52.389 52.115 52.646 3.3465 56 37 2 0 0 0 0.48414 1 10727 10727 2.3027 0 1 101970 + 21101 31681 13028 13037 25346 25346 0.010294067476934288 LDNTNKEL 8 Unmodified _LDNTNKEL_ 0 0 0 REV__L1PA8A_dup159|chr1:247133014-247133650:+|2.9996834771490954|0.1771141060326569|4.08|151.0|10|2|sense REV__L1PA8A_dup159|chr1:247133014-247133650:+|2.9996834771490954|0.1771141060326569|4.08|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 473.74493408203125 2 473.745639 945.476725 -0.60599 -0.00028708 0.44145 0.00020913 -0.16454 -7.7951E-05 473.7457561201562 30.555 0.42781 33.867 33.622 34.05 3.3116 48 32 2 0 0 0 0.82752 2 5071 5071;5123 24.021 0 1 69661 + 21102 28848 13029 13038 25347;25348 25347 0.0018058679257819676 LDNTNKEL 8 Unmodified _LDNTNKEL_ 0 0 0 REV__L1PA8A_dup159|chr1:247133014-247133650:+|2.9996834771490954|0.1771141060326569|4.08|151.0|10|2|sense REV__L1PA8A_dup159|chr1:247133014-247133650:+|2.9996834771490954|0.1771141060326569|4.08|151.0|10|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 473.745639 945.476725 -0.33363 -0.00015806 -0.052542 -2.4891E-05 -0.38617 -0.00018295 473.74565517541174 30.274 0.41446 34.018 33.812 34.226 3.7449 0.093103 -8.2864E-05 NaN 24.021 44 27 2 NaN NaN NaN NaN 0 NaN NaN 0 92530 + 21103 28848 13029 13038 0.0018058679257819676 LDPDHKKL 8 Unmodified _LDPDHKKL_ 0 0 0 MLT1H-int_dup325|chr6:144172601-144173938:-|1.2586432958050189|0.0127636971101861|6.62|149.0|54|1|anti-sense MLT1H-int_dup325|chr6:144172601-144173938:-|1.2586432958050189|0.0127636971101861|6.62|149.0|54|1|anti-sense MLT1H-int_dup325|chr6:144172601-144173938:-|1.2586432958050189|0.0127636971101861|6.62|149.0|54|1|anti-sense MSMS UPN48_class_I_Rep_1 5 483.2728271484375 2 483.274367 964.53418 NaN NaN NaN NaN NaN NaN NaN 69.999 1 73.459 72.959 73.959 3.4598 0 0 0 0.4044 1 16280 16280 4.756 0 1 21104 16435 13030 13039 25349 25349 0.05049473788801606 LDPFIICLF 9 Unmodified _LDPFIICLF_ 0 0 0 REV__L1MA8_dup3561|chr6:37910473-37911551:-|3.147780399883393|0.0098708696054373|8.32|151.0|56|1|anti-sense REV__L1MA8_dup3561|chr6:37910473-37911551:-|3.147780399883393|0.0098708696054373|8.32|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_1 5 540.7958374023438 2 540.793546 1079.57254 NaN NaN NaN NaN NaN NaN NaN 68.249 1 71.701 71.201 72.201 3.4517 0 0 0 0.28335 1 15748 15748 11.64 2.8949 1 + 21105 25554 13031 13040 25350 25350 0.03593643379099376 LDPHSLDPTY 10 Unmodified _LDPHSLDPTY_ 0 0 0 L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|58|1|anti-sense L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|58|1|anti-sense L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.277587890625 2 579.277303 1156.54005 0.37955 0.00021987 -0.16243 -9.4095E-05 0.21712 0.00012577 579.2771229370014 58.179 0.7961 61.616 61.307 62.103 3.437 82 49 2 0 0 0 0.54078 1 13376 13376 6.7232 0 1 243100 21106 15165 13032 13041 25351 25351 -0.03195472490187967 LDPHSLDPTY 10 Unmodified _LDPHSLDPTY_ 0 0 0 L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|58|1|anti-sense L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|58|1|anti-sense L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.2774658203125 2 579.277303 1156.54005 0.34065 0.00019733 -0.021738 -1.2592E-05 0.31892 0.00018474 579.277250430345 58.455 0.86735 61.62 61.362 62.23 3.1658 94 53 2 0 0 0 0.51565 1 13638 13638 10.074 0 1 219000 21107 15165 13032 13041 25352 25352 -0.03195472490187967 LDPMDLIDLY 10 Unmodified _LDPMDLIDLY_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|120|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|120|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|120|3|sense MSMS UPN48_class_I_Rep_1 5 604.298828125 2 604.29939 1206.58423 NaN NaN NaN NaN NaN NaN NaN 46.586 1 50.105 49.605 50.605 3.5192 0 0 0 0.53105 1 9112 9112 3.2813 0 1 21108 15424 13033 13042 25353 25353 -0.010802043881994905 LDPMTLPLSQ 10 Unmodified _LDPMTLPLSQ_ 0 0 0 REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF MSMS UPN47_class_I_Rep_1 2 557.7954711914062 2 557.794275 1113.574 NaN NaN NaN NaN NaN NaN NaN 24.158 1 27.888 27.388 28.388 3.7298 0 0 0 0.53105 1 3111 3111 1.4819 0.79152 1 + 21109 22027 13034 13043 25354 25354 0.021752326772229935 LDPYTPSHTL 10 Unmodified _LDPYTPSHTL_ 0 0 0 REV__ENST00000308302.3_1_1:204167444-204167576:-|nuORF REV__ENST00000308302.3_1_1:204167444-204167576:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 572.2872314453125 2 572.287671 1142.56079 0.34705 0.00019861 0.01748 1.0004E-05 0.36453 0.00020861 572.2873679724928 64.417 0.63557 67.772 67.526 68.162 3.3557 131 65 3 0 0 0 0.54466 1 15244 15244 6.2058 2.6093 1 260660 + 21110 21695 13035 13044 25355 25355 -0.004788821105421448 LDQKMKSIS 9 Unmodified _LDQKMKSIS_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS UPN47_class_I_Rep_3 4 525.3031005859375 2 525.286617 1048.55868 NaN NaN NaN NaN NaN NaN NaN 61.392 1 64.557 64.057 65.057 3.1651 0 0 0 0.38639 1 14479 14479 3.9444 0 1 21111 2340 13036 13045 25356 25356 0.03634365880043333 LDQSRWWL 8 Unmodified _LDQSRWWL_ 0 0 0 REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF MSMS UPN48_class_I_Rep_2 6 552.2855834960938 2 552.285266 1102.55598 NaN NaN NaN NaN NaN NaN NaN 62.031 1 65.505 65.005 66.005 3.4738 0 0 0 0.40604 1 13828 13828 2.5775 0.51773 1 + 21112 18576 13037 13046 25357 25357 0.008802785373745792 LDQVHKSI 8 Unmodified _LDQVHKSI_ 0 0 0 REV__L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|31|3|sense REV__L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 470.2655944824219 2 470.266542 938.51853 -0.74743 -0.00035149 0.30512 0.00014349 -0.44231 -0.00020801 470.26670759346985 23.683 0.68882 27.034 26.674 27.363 3.3509 91 54 2 0 0 0 0.82752 1 3113 3113 3.9444 0 1 110980 + 21113 27333 13038 13047 25358 25358 0.0468118727176261 LDRKELPPAL 10 Unmodified _LDRKELPPAL_ 0 0 0 REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 576.3432006835938 2 576.342781 1150.67101 0.63493 0.00036594 -0.237 -0.00013659 0.39794 0.00022935 576.3423919975356 107.89 0.27065 111.42 111.35 111.62 3.5345 78 32 4 0 0 0 0.53004 1 26108 26108 8.1555 0.54658 1 13481000 + 21114 23682 13039 13048 25359 25359 0.10169962948543798 LDRKELPPAL 10 Unmodified _LDRKELPPAL_ 0 0 0 REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 576.3421020507812 2 576.342781 1150.67101 0.40262 0.00023204 0.03741 2.1561E-05 0.44003 0.00025361 576.3424930112293 107.88 0.39231 111.51 111.42 111.81 3.6313 99 34 5 0 0 0 0.53004 1 26025 26025 8.1555 0 1 23796000 + 21115 23682 13039 13048 25360 25360 0.10169962948543798 LDRKELPPAL 10 Unmodified _LDRKELPPAL_ 0 0 0 REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 576.3429565429688 2 576.342781 1150.67101 0.47818 0.0002756 -0.15188 -8.7535E-05 0.3263 0.00018806 576.3424611206899 107.85 0.1852 111.53 111.47 111.66 3.6813 46 18 3 0 0 0 0.53004 1 25463 25463 8.1555 1.0538 1 16317000 + 21116 23682 13039 13048 25361 25361 0.10169962948543798 LDRNRHCLRRR 11 Unmodified _LDRNRHCLRRR_ 0 0 0 REV__MER39B_dup779|chr10:11208216-11208886:-|4.78016543567658|0.146519050145117|5.03|151.0|18|3|sense REV__MER39B_dup779|chr10:11208216-11208886:-|4.78016543567658|0.146519050145117|5.03|151.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 499.28167724609375 3 498.948015 1493.82221 NaN NaN NaN NaN NaN NaN NaN 36.502 1 40.169 39.669 40.669 3.6667 0 0 0 0.38417 1 6050 6050 0.094841 0 1 + 21117 31275 13040 13049 25362 25362 0.09505638828045448 LDRQAPQLW 9 Unmodified _LDRQAPQLW_ 0 0 0 REV__ENSG00000196387|ENST00000355557|ZNF140 REV__ENSG00000196387|ENST00000355557|ZNF140 MULTI-MSMS UPN48_class_I_Rep_1 5 563.80419921875 2 563.803823 1125.59309 0.47956 0.00027038 -0.0079956 -4.508E-06 0.47156 0.00026587 563.803648333024 35.723 0.5203 39.233 38.91 39.431 3.5101 71 50 2 0 0 0 0.46869 1 5878 5878 3.9444 0.3479 1 116770 + 21118 21034 13041 13050 25363 25363 0.035319500831292316 LDRQARRW 8 Unmodified _LDRQARRW_ 0 0 0 REV__ENST00000441248.5_1_X:148623158-148623314:+|nuORF REV__ENST00000441248.5_1_X:148623158-148623314:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 550.8069458007812 2 550.807231 1099.59991 0.033181 1.8276E-05 -1.1313 -0.00062313 -1.0981 -0.00060485 550.8066844458415 31.958 0.5457 35.428 35.248 35.793 3.4691 62 40 2 0 0 0 0.82752 1 5458 5458 8.5933 8.5933 1 98791 + 21119 22332 13042 13051 25364 25364 0.05409307754348447 LDRSLLLR 8 Unmodified _LDRSLLLR_ 0 0 0 REV__ENST00000367760.7_1_1:170632392-170632500:+|nuORF REV__ENST00000367760.7_1_1:170632392-170632500:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.3106689453125 2 493.311284 984.608014 0.038701 1.9092E-05 -0.14814 -7.3077E-05 -0.10944 -5.3986E-05 493.3111392519659 44.886 0.75255 48.242 48.006 48.759 3.3556 65 45 2 0 0 0 0.82752 1 9390 9390 13.906 1.3745 1 111630 + 21120 21932 13043 13052 25365 25365 0.11509441951147892 LDRTVVLR 8 Unmodified _LDRTVVLR_ 0 0 0 REV__L1MA4_dup6800|chr10:63249345-63249578:+|1.0554552098663157|0.003254232839001|8.34|150.0|9|3|sense REV__L1MA4_dup6800|chr10:63249345-63249578:+|1.0554552098663157|0.003254232839001|8.34|150.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.3033752441406 2 486.303458 970.592364 -0.23738 -0.00011544 -0.016919 -8.2277E-06 -0.2543 -0.00012367 486.3034343220658 41.733 1.4216 44.97 44.585 46.006 3.2372 260 112 3 0 0 0 0.82752 2 8622 8421;8622 15.847 0 1 736630 + 21121 25199 13044 13053 25366;25367 25367 0.10589155434092845 LDRVEAPSV 9 Unmodified _LDRVEAPSV_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MULTI-MSMS UPN47_class_I_Rep_3 4 493.2687072753906 2 493.269281 984.52401 -0.43616 -0.00021514 -0.086676 -4.2755E-05 -0.52283 -0.0002579 493.2692315895791 28.862 0.49372 32.196 31.964 32.458 3.3337 51 39 2 0 0 0 0.49026 1 4556 4556 1.6526 0.45928 1 55614 + 21122 19643 13045 13054 25368 25368 0.031128660635772576 LDSFQHEEV 9 Unmodified _LDSFQHEEV_ 0 0 0 REV__ENSG00000127124|ENST00000372583|HIVEP3 REV__ENSG00000127124|ENST00000372583|HIVEP3 MULTI-MSMS UPN47_class_I_Rep_1 2 552.2529907226562 2 552.253828 1102.4931 -0.0032838 -1.8135E-06 -0.47003 -0.00025958 -0.47332 -0.00026139 552.2538861362603 38.63 0.64134 42.295 42.034 42.675 3.6652 85 43 3 0 0 0 0.47493 1 7429 7429 3.2813 0 1 153020 + 21123 18871 13046 13055 25369 25369 -0.05404332041325688 LDSFQHEEV 9 Unmodified _LDSFQHEEV_ 0 0 0 REV__ENSG00000127124|ENST00000372583|HIVEP3 REV__ENSG00000127124|ENST00000372583|HIVEP3 MULTI-MSMS UPN47_class_I_Rep_2 3 552.25390625 2 552.253828 1102.4931 0.036741 2.029E-05 -0.3938 -0.00021748 -0.35706 -0.00019719 552.253907976547 38.885 0.70147 42.264 42.035 42.736 3.3785 58 40 2 0 0 0 0.37599 1 7600 7600 9.3831 0 1 122950 + 21124 18871 13046 13055 25370 25370 -0.05404332041325688 LDSKWKLVA 9 Unmodified _LDSKWKLVA_ 0 0 0 REV__ENSG00000118508|ENST00000367495|RAB32 REV__ENSG00000118508|ENST00000367495|RAB32 MULTI-MSMS UPN47_class_I_Rep_2 3 530.312255859375 2 530.313492 1058.61243 -0.16428 -8.7118E-05 -1.1536 -0.00061176 -1.3179 -0.00069888 530.3125928227203 38.719 1.0672 42.098 41.669 42.736 3.3785 99 71 2 0 0 0 0.26468 3 7463 7425;7463;7582 16.149 0 1 122330 + 21125 18655 13047 13056 25371;25372;25373 25372 0.08546906374044738 LDSLSFEYF 9 Unmodified _LDSLSFEYF_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS UPN48_class_I_Rep_1 5 560.3301391601562 2 560.763497 1119.51244 NaN NaN NaN NaN NaN NaN NaN 43.119 1 46.629 46.129 47.129 3.5103 0 0 0 0.38639 1 8056 8056 3.9444 0 1 + 21126 20925 13048 13057 25374 25374 -0.04253375750431587 LDSLTLIKY 9 Unmodified _LDSLTLIKY_ 0 0 0 REV__L1MC1_dup5461|chr6:110163620-110165366:+|1.0573553109597813|0.0835149071701892|3.66|147.0|22|1|sense REV__L1MC1_dup5461|chr6:110163620-110165366:+|1.0573553109597813|0.0835149071701892|3.66|147.0|22|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 532.78173828125 2 533.313158 1064.61176 0.54807 0.00029229 -0.43541 -0.00023221 0.11266 6.0083E-05 533.3128341983752 56.677 0.69727 60.21 59.867 60.564 3.5333 81 65 2 0 0 0 0.11598 1 12263 12263 11.64 0 1 176250 + 21127 26577 13049 13058 25375 25375 0.08204066934331422 LDSQQKQTL 9 Unmodified _LDSQQKQTL_ 0 0 0 L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|2|1|sense L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|2|1|sense L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.7853393554688 2 530.785296 1059.55604 0.062714 3.3288E-05 -0.18676 -9.9132E-05 -0.12405 -6.5844E-05 530.7852771574806 46.222 0.3688 49.576 49.299 49.668 3.3534 45 24 2 0 0 0 0.38714 1 9824 9824 8.7454 0 1 74758 21128 13377 13050 13059 25376 25376 0.028642337467317702 LDSRFVDKL 9 Unmodified _LDSRFVDKL_ 0 0 0 ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD MULTI-SECPEP UPN48_class_I_Rep_2 6 546.8297119140625 2 546.806031 1091.59751 0.39608 0.00021658 -0.47406 -0.00025922 -0.077986 -4.2643E-05 546.8057391612234 46.183 0.57114 49.941 49.642 50.213 3.7579 52 35 2 0 0 0 0.11642 1 8954 8954 12.241 2.1667 1 126770 21129 5204 13051 13060 25377 25377 0.05537414506034111 LDSVLGLHSF 10 Unmodified _LDSVLGLHSF_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|165|1|anti-sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|165|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 543.7945556640625 2 544.292756 1086.57096 0.35393 0.00019264 -1.8284 -0.00099521 -1.4745 -0.00080256 544.294094144928 53.283 0.09502 56.811 56.728 56.823 3.5278 12 7 2 0 0 0 0.84575 1 11904 11904 3.5965 0.70727 1 67973 + 21130 23544 13052 13061 25378 25378 0.031137256147076187 LDTLETENLR 10 Unmodified _LDTLETENLR_ 0 0 0 REV__ENSG00000196950.14,SLC39A10,chr2,+,I15.1,195728350,195734882|32|8.37|2|intron REV__ENSG00000196950.14,SLC39A10,chr2,+,I15.1,195728350,195734882|32|8.37|2|intron MSMS UPN47_class_I_Rep_3 4 401.8778381347656 3 401.878704 1202.61428 NaN NaN NaN NaN NaN NaN NaN 17.273 1 20.632 20.132 21.132 3.3581 0 0 0 0.53105 1 1237 1237 0.69767 0 1 + 21131 21061 13053 13062 25379 25379 0.021078706013213377 LDTRKLQQL 9 Unmodified _LDTRKLQQL_ 0 0 0 REV__LTR8_dup2971|chr17:8380695-8381392:+|3.61180262798887|0.2447948664736123|3.88|151.0|21|3|sense REV__LTR8_dup2971|chr17:8380695-8381392:+|3.61180262798887|0.2447948664736123|3.88|151.0|21|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.8327026367188 2 557.83258 1113.65061 0.046041 2.5683E-05 -0.019448 -1.0849E-05 0.026593 1.4834E-05 557.8325022948654 33.191 0.4779 36.646 36.477 36.955 3.4547 54 37 2 0 0 0 0.47197 1 5864 5864 3.5965 0 1 56876 + 21132 31022 13054 13063 25380 25380 0.09832792288693781 LDTVTLEAV 9 Unmodified _LDTVTLEAV_ 0 0 0 REV__ENST00000503252.1_1_5:1463768-1467406:-|nuORF REV__ENST00000503252.1_1_5:1463768-1467406:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 480.7654724121094 2 480.76604 959.517527 0.1151 5.5338E-05 -0.18721 -9.0005E-05 -0.072107 -3.4667E-05 480.7658734801281 72.308 0.3967 75.688 75.506 75.902 3.3799 43 27 2 0 0 0 0.28552 2 17729 17642;17729 14.838 4.0143 1 91077 + 21133 19711 13055 13064 25381;25382 25382 0.03614928112187954 LDTWVSRTRE 10 Unmodified _LDTWVSRTRE_ 0 0 0 nc|ENSG00000100060|O00587-2|MFNG;ENSG00000100060|ENST00000356998|MFNG nc|ENSG00000100060|O00587-2|MFNG nc|ENSG00000100060|O00587-2|MFNG MSMS UPN46_class_I_Rep_3 1 631.8265991210938 2 631.828026 1261.6415 NaN NaN NaN NaN NaN NaN NaN 56.673 1 56.673 56.173 57.173 0 0 0 0 0.53105 1 12375 12375 1.4819 0.15237 1 21134 1469 13056 13065 25383 25383 0.02114398932349104 LDTYNLPM 8 Unmodified _LDTYNLPM_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|182|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|182|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|182|3|sense MSMS UPN47_class_I_Rep_2 3 483.7357177734375 2 483.733686 965.452819 NaN NaN NaN NaN NaN NaN NaN 27.064 1 30.562 30.062 31.062 3.4986 0 0 0 0.40581 1 4007 4007 2.8892 0 1 21135 9293 13057 13066 25384 25384 -0.031289699654507785 LDVCCKALLY 10 Unmodified _LDVCCKALLY_ 0 0 0 REV__ENST00000525495.6_2_17:45219385-45266538:-|nuORF REV__ENST00000525495.6_2_17:45219385-45266538:-|nuORF MSMS UPN47_class_I_Rep_1 2 570.7932739257812 2 570.79322 1139.57189 NaN NaN NaN NaN NaN NaN NaN 64.231 1 67.587 67.087 68.087 3.3557 0 0 0 0.53105 1 15250 15250 6.7232 0 1 + 21136 17521 13058 13067 25385 25385 0.007684806677616507 LDVFEPTVI 9 Unmodified _LDVFEPTVI_ 0 0 0 REV__nc|ENSG00000185567|Q8IVF2-2|AHNAK2 REV__nc|ENSG00000185567|Q8IVF2-2|AHNAK2 MULTI-MSMS UPN47_class_I_Rep_3 4 516.7842407226562 2 516.784233 1031.55391 0.30595 0.00015811 0.40109 0.00020727 0.70704 0.00036539 516.7844700309877 76.58 0.60937 79.849 79.494 80.104 3.269 85 61 2 0 0 0 0.42249 1 19054 19054 6.7232 0 1 129010 + 21137 20858 13059 13068 25386 25386 0.039398050088948366 LDVGARFWK 9 Unmodified _LDVGARFWK_ 0 0 0 nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1;ENST00000397998.7_1_8:19263293-19315147:-|nuORF;ENSG00000147408|ENST00000692225|CSGALNACT1 nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1 nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1 MSMS UPN47_class_I_Rep_1 2 546.27978515625 2 546.303458 1090.59236 NaN NaN NaN NaN NaN NaN NaN 68.421 1 71.786 71.286 72.286 3.3646 0 0 0 0.38478 1 16516 16516 4.3292 1.0479 1 21138 3473 13060 13069 25387 25387 0.050691554340801304 LDVHSFNWS 9 Unmodified _LDVHSFNWS_ 0 0 0 REV__ENST00000498824.4_1_13:41556155-41556248:-|nuORF REV__ENST00000498824.4_1_13:41556155-41556248:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 552.7591552734375 2 552.759081 1103.50361 0.036372 2.0105E-05 0.27686 0.00015304 0.31323 0.00017314 552.7592021069767 41.87 0.58426 45.549 45.238 45.822 3.6792 73 41 2 0 0 0 0.47197 1 8444 8444 3.5965 0 1 99319 + 21139 22683 13061 13070 25388 25388 -0.04400304596242677 LDVIRYQTAF 10 Unmodified _LDVIRYQTAF_ 0 0 0 REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 613.3326416015625 2 613.332413 1224.65027 0.61012 0.00037421 -0.32682 -0.00020045 0.2833 0.00017376 613.3321228981944 66.112 0.9113 69.62 69.225 70.136 3.5077 178 68 3 0 0 0 0.53004 1 15138 15138 8.1555 2.4237 1 762860 + 21140 20215 13062 13071 25389 25389 0.04693372568840459 LDVIYMRRLV 10 Unmodified _LDVIYMRRLV_ 0 0 0 REV__L1PA8_dup4863|chrX:75311439-75313281:-|1.132545696123629|0.068180336544676|4.05|151.0|60|1|anti-sense REV__L1PA8_dup4863|chrX:75311439-75313281:-|1.132545696123629|0.068180336544676|4.05|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_3 4 639.3739624023438 2 639.373558 1276.73256 NaN NaN NaN NaN NaN NaN NaN 113.32 1 116.83 116.33 117.33 3.5098 0 0 0 0.53105 1 27792 27792 0.40072 0 1 + 21141 30235 13063 13072 25390 25390 0.10526571376158245 LDVKLYLK 8 Unmodified _LDVKLYLK_ 0 0 0 REV__L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|5|1|sense REV__L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 496.31317138671875 2 496.312961 990.611368 0.24308 0.00012065 -0.072451 -3.5958E-05 0.17063 8.4687E-05 496.31278617932634 49.812 0.59879 53.038 52.61 53.209 3.2262 51 32 2 0 0 0 0.82752 1 10874 10874 12.532 0 1 110360 + 21142 27758 13064 13073 25391 25391 0.11568692005118919 LDVLARAIR 9 Unmodified _LDVLARAIR_ 0 0 0 L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|95|2|sense;L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|19|2|sense;L1PA7_dup10349|chr12:46595295-46598256:-|1.2324648857549068|0.0225437215348513|5.77|149.0|51|2|sense;L1MA7_dup4004|chr8:47295341-47297459:-|2.2779011951330963|0.0292406973508824|6.28|151.0|2|1|sense;L1MA6_dup1717|chr5:50775579-50776461:-|1.293777787642214|0.0328289864683606|5.3|151.0|9|1|sense;L1MA3_dup6679|chr12:9017295-9018595:+|2.1094489299292944|0.0837291027932214|4.65|151.0|4|1|sense;L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense;L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|133|3|sense;L1PA5_dup3726|chr5:83127983-83133776:-|1.163176355464448|0.0668289464734377|4.12|151.0|167|3|sense;L1PA5_dup9169|chr13:48696536-48701520:+|1.2053157210591312|0.1032640766230533|3.55|151.0|100|2|sense;L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|170|3|sense;L1PA5_dup8739|chr12:46539931-46546054:-|1.2260831228194753|0.0462972169374036|4.73|151.0|168|3|sense L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|95|2|sense L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|95|2|sense MSMS UPN47_class_I_Rep_3 4 513.8240356445312 2 513.824558 1025.63456 NaN NaN NaN NaN NaN NaN NaN 45.61 1 48.854 48.354 49.354 3.2441 0 0 0 0.38784 1 9680 9680 3.5965 0 1 21143 9612 13065 13074 25392 25392 0.12277130842448969 LDVLPDARP 9 Unmodified _LDVLPDARP_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS UPN48_class_I_Rep_1 5 498.2797546386719 2 498.279649 994.544745 0.22916 0.00011418 -0.15787 -7.8664E-05 0.071283 3.5519E-05 498.27958033549174 35.546 0.65276 39.057 38.768 39.421 3.5101 96 64 2 0 0 0 0.23293 1 5783 5783 18.146 0 1 160570 21144 1795 13066 13075 25393 25393 0.04725456443236453 LDVLPDARP 9 Unmodified _LDVLPDARP_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS UPN48_class_I_Rep_3 7 498.2794494628906 2 498.279649 994.544745 0.16116 8.0301E-05 -0.12756 -6.356E-05 0.033598 1.6741E-05 498.27952097583307 35.377 0.61085 39.049 38.774 39.384 3.6721 131 63 3 0 0 0 0.23293 1 5706 5706 18.146 0 1 164330 21145 1795 13066 13075 25394 25394 0.04725456443236453 LDVLSSSGVF 10 Unmodified _LDVLSSSGVF_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS UPN46_class_I_Rep_3 1 512.2708129882812 2 512.27149 1022.52843 0.3204 0.00016413 -1.1798 -0.0006044 -0.85944 -0.00044027 512.2707835498304 99.124 0.097511 99.124 99.076 99.173 0 23 12 2 0 0 0 0.56033 1 24137 24137 3.5965 0.70727 1 158560 21146 3607 13067 13076 25395 25395 0.018063304864881502 LDVNLHLF 8 Unmodified _LDVNLHLF_ 0 0 0 REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|48|1|anti-sense REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|48|1|anti-sense MSMS UPN48_class_I_Rep_1 5 485.78436279296875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 68.2 1 71.652 71.152 72.152 3.4517 0 0 0 0.40581 1 15733 15733 2.8892 0 1 + 21147 29276 13068 13077 25396 25396 0.0423837527713431 LDVSTLLLT 9 Unmodified _LDVSTLLLT_ 0 0 0 REV__Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|149|3|anti-sense REV__Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|149|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.79168701171875 2 487.792058 973.569563 0.18151 8.8541E-05 -1.8528 -0.00090379 -1.6713 -0.00081525 487.7911230354498 75.136 0.6289 78.383 77.892 78.521 3.2464 104 67 2 0 0 0 0.41259 1 18572 18572 7.2892 2.5332 1 155750 + 21148 17378 13069 13078 25397 25397 0.08172091525955238 LDVSTLLLT 9 Unmodified _LDVSTLLLT_ 0 0 0 REV__Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|149|3|anti-sense REV__Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|149|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 487.792058 973.569563 0.18151 8.8541E-05 -1.8528 -0.00090379 -1.6713 -0.00081525 487.7911230354498 75.136 0.6289 78.383 77.892 78.521 3.2464 -0.0013 -0.00012777 NaN 7.2892 104 67 2 NaN NaN NaN NaN 0 NaN NaN 0 155750 + 21149 17378 13069 13078 0.08172091525955238 LDVSYFFILP 10 Unmodified _LDVSYFFILP_ 0 0 0 L1P4_dup2103|chrX:72417127-72418730:+|3.604601969950515|0.0930856558784156|5.28|151.0|75|1|anti-sense L1P4_dup2103|chrX:72417127-72418730:+|3.604601969950515|0.0930856558784156|5.28|151.0|75|1|anti-sense L1P4_dup2103|chrX:72417127-72418730:+|3.604601969950515|0.0930856558784156|5.28|151.0|75|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 607.32958984375 2 607.328808 1212.64306 0.53434 0.00032452 0.55897 0.00033948 1.0933 0.000664 607.3290367076186 54.054 0.55661 54.054 53.913 54.47 0 91 58 2 0 0 0 0.55993 1 11752 11752 3.9444 0 1 314390 21150 13551 13070 13079 25398 25398 0.04524639968417432 LDVTPKSQAK 10 Unmodified _LDVTPKSQAK_ 0 0 0 L1M4_dup9978|chr9:92444211-92444662:-|1.0084737206068737|0.0029574982846027|8.41|151.0|13|3|sense L1M4_dup9978|chr9:92444211-92444662:-|1.0084737206068737|0.0029574982846027|8.41|151.0|13|3|sense L1M4_dup9978|chr9:92444211-92444662:-|1.0084737206068737|0.0029574982846027|8.41|151.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.8111572265625 2 543.811313 1085.60807 -0.083298 -4.5299E-05 -0.084114 -4.5742E-05 -0.16741 -9.104E-05 543.8111512152052 37.787 0.55949 41.028 40.686 41.245 3.2414 66 41 2 0 0 0 0.56354 1 7197 7197 1.3295 0 1 68820 21151 8933 13071 13080 25399 25399 0.06869397160448898 LDVVVAKTV 9 Unmodified _LDVVVAKTV_ 0 0 0 REV__ENSG00000187003|ENST00000333999|ACTL7A REV__ENSG00000187003|ENST00000333999|ACTL7A MULTI-MSMS UPN47_class_I_Rep_3 4 472.29425048828125 2 472.294768 942.574983 -0.56606 -0.00026735 -0.64214 -0.00030328 -1.2082 -0.00057063 472.29432224266094 34.282 0.58283 37.557 37.205 37.788 3.2748 72 39 2 0 0 0 0.279 1 6150 6150 15.248 0 1 103090 + 21152 20913 13072 13081 25400 25400 0.1013981510842541 LDVWIFFG 8 Unmodified _LDVWIFFG_ 0 0 0 REV__ENST00000534035.1_1_11:44102597-44105415:+|nuORF REV__ENST00000534035.1_1_11:44102597-44105415:+|nuORF MSMS UPN48_class_I_Rep_1 5 498.76373291015625 2 498.763104 995.511654 NaN NaN NaN NaN NaN NaN NaN 33.68 1 37.201 36.701 37.701 3.5201 0 0 0 0.40738 1 5287 5287 0.79363 0 1 + 21153 18434 13073 13082 25401 25401 0.013718743912022546 LDVWLIAI 8 Unmodified _LDVWLIAI_ 0 0 0 REV__ENST00000533506.5_1_14:50458571-50458706:-|nuORF REV__ENST00000533506.5_1_14:50458571-50458706:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7843933105469 2 471.786579 941.558604 NaN NaN NaN NaN NaN NaN NaN 58.262 1 61.699 61.199 62.199 3.437 0 0 0 0.40404 1 13440 13440 5.2307 0 1 + 21154 22873 13074 13083 25402 25402 0.0854873394232527 LDVYIKLK 8 Unmodified _LDVYIKLK_ 0 0 0 REV__L1PA15_dup7399|chr15:56220531-56221428:-|1.7866976873119136|0.0265966878456091|6.07|151.0|4|1|sense REV__L1PA15_dup7399|chr15:56220531-56221428:-|1.7866976873119136|0.0265966878456091|6.07|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 496.31268310546875 2 496.312961 990.611368 0.2219 0.00011013 -0.071541 -3.5507E-05 0.15036 7.4625E-05 496.31264556736284 49.519 0.79596 52.862 52.514 53.31 3.3431 74 51 2 0 0 0 0.82752 1 10748 10748 8.5933 0 1 126060 + 21155 29282 13075 13084 25403 25403 0.11568692005118919 LDVYIKLK 8 Unmodified _LDVYIKLK_ 0 0 0 REV__L1PA15_dup7399|chr15:56220531-56221428:-|1.7866976873119136|0.0265966878456091|6.07|151.0|4|1|sense REV__L1PA15_dup7399|chr15:56220531-56221428:-|1.7866976873119136|0.0265966878456091|6.07|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 496.3129577636719 2 496.312961 990.611368 0.24308 0.00012065 -0.072451 -3.5958E-05 0.17063 8.4687E-05 496.31278617932634 49.812 0.59879 53.038 52.61 53.209 3.2262 51 32 2 0 0 0 0.82752 1 10866 10866 5.2307 0 1 110360 + 21156 29282 13075 13084 25404 25404 0.11568692005118919 LDWDEVFPV 9 Unmodified _LDWDEVFPV_ 0 0 0 REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.271728515625 2 560.27149 1118.52843 0.48741 0.00027308 -0.23089 -0.00012936 0.25653 0.00014373 560.271043572167 78.497 0.58024 81.84 81.537 82.117 3.3428 88 62 2 0 0 0 0.46869 1 19515 19515 3.9444 0 1 115530 + 21157 19618 13076 13085 25405 25405 -0.02609669513526569 LDWRNIKQK 9 Unmodified _LDWRNIKQK_ 0 0 0 REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|120|3|sense REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|120|3|sense MSMS UPN47_class_I_Rep_3 4 600.8457641601562 2 600.846022 1199.67749 NaN NaN NaN NaN NaN NaN NaN 49.05 1 52.284 51.784 52.784 3.2345 0 0 0 0.39598 1 10719 10719 1.6526 0.32309 1 + 21158 30513 13077 13086 25406 25406 0.08563900899866894 LDYISKTK 8 Unmodified _LDYISKTK_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS UPN47_class_I_Rep_2 3 484.2763977050781 2 484.276575 966.538597 -0.17714 -8.5787E-05 0.022888 1.1084E-05 -0.15426 -7.4703E-05 484.27654723977366 27.262 0.4766 30.761 30.529 31.006 3.4986 70 40 2 0 0 0 0.82752 1 4105 4105 4.3292 0 1 89914 21159 2838 13078 13087 25407 25407 0.05398938211726545 LDYKGISSCN 10 Unmodified _LDYKGISSCN_ 0 0 0 ENST00000358290.8_1_4:88293929-88295854:-|nuORF ENST00000358290.8_1_4:88293929-88295854:-|nuORF ENST00000358290.8_1_4:88293929-88295854:-|nuORF MSMS UPN46_class_I_Rep_3 1 550.259033203125 2 550.258056 1098.50156 NaN NaN NaN NaN NaN NaN NaN 33.188 1 33.188 32.688 33.688 0 0 0 0 0.53105 1 5774 5774 1.1933 0.12188 1 21160 6296 13079 13088 25408 25408 -0.04375101396340142 LDYRKWNKQ 9 Unmodified _LDYRKWNKQ_ 0 0 0 REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF MSMS UPN48_class_I_Rep_1 5 625.8362426757812 2 625.835654 1249.65676 NaN NaN NaN NaN NaN NaN NaN 48.414 1 51.938 51.438 52.438 3.5239 0 0 0 0.39518 1 9675 9675 1.8442 0.36234 1 + 21161 22819 13080 13089 25409 25409 0.04191310520218394 LEALPHLAL 9 Unmodified _LEALPHLAL_ 0 0 0 REV__ENST00000525039.5_1_11:118895622-118898521:-|nuORF REV__ENST00000525039.5_1_11:118895622-118898521:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 488.7946472167969 2 488.794935 975.575317 0.19514 9.5382E-05 -0.078197 -3.8222E-05 0.11694 5.7159E-05 488.7947588776825 65.729 0.67406 68.985 68.566 69.24 3.2556 55 42 2 0 0 0 0.3898 1 15793 15793 8.5933 0 1 180690 + 21162 22805 13081 13090 25410 25410 0.08655234828268021 LEALPHLAL 9 Unmodified _LEALPHLAL_ 0 0 0 REV__ENST00000525039.5_1_11:118895622-118898521:-|nuORF REV__ENST00000525039.5_1_11:118895622-118898521:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 488.7950134277344 2 488.794935 975.575317 0.17065 8.3411E-05 -0.052744 -2.5781E-05 0.1179 5.763E-05 488.7946706617474 65.683 0.58707 68.863 68.685 69.272 3.1795 62 33 2 0 0 0 0.3898 1 15892 15892 8.5933 0 1 168610 + 21163 22805 13081 13090 25411 25411 0.08655234828268021 LEALRLAN 8 Unmodified _LEALRLAN_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 450.2682800292969 2 450.269084 898.523616 -0.21789 -9.8107E-05 -0.60734 -0.00027347 -0.82523 -0.00037157 450.2687516449272 45.286 0.55238 48.986 48.677 49.229 3.6999 47 32 2 0 0 0 0.82752 1 9460 9460 0.69038 0 1 89631 21164 425 13082 13091 25412 25412 0.07029491134358068 LEALRVYL 8 Unmodified _LEALRVYL_ 0 0 0 L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|45|2|anti-sense L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|45|2|anti-sense L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.7950744628906 2 488.794935 975.575317 0.11881 5.8072E-05 -0.10779 -5.2689E-05 0.011013 5.3832E-06 488.7947561873663 65.401 0.84132 68.756 68.421 69.263 3.3557 72 48 2 0 0 0 0.82752 1 15659 15659 12.532 0 1 132520 21165 13444 13083 13092 25413 25413 0.08655234828268021 LEALRVYL 8 Unmodified _LEALRVYL_ 0 0 0 L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|45|2|anti-sense L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|45|2|anti-sense L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.7948913574219 2 488.794935 975.575317 0.19514 9.5382E-05 -0.078197 -3.8222E-05 0.11694 5.7159E-05 488.7947588776825 65.729 0.67406 68.985 68.566 69.24 3.2556 55 42 2 0 0 0 0.82752 1 15721 15721 12.532 0 1 180690 21166 13444 13083 13092 25414 25414 0.08655234828268021 LEAQLPDSEL 10 Unmodified _LEAQLPDSEL_ 0 0 0 ENST00000553891.5_1_14:73441641-73442313:-|nuORF ENST00000553891.5_1_14:73441641-73442313:-|nuORF ENST00000553891.5_1_14:73441641-73442313:-|nuORF MSMS UPN47_class_I_Rep_3 4 557.78662109375 2 557.784961 1113.55537 NaN NaN NaN NaN NaN NaN NaN 77.419 1 80.688 80.188 81.188 3.269 0 0 0 0.53105 1 19278 19278 7.609 0.88579 1 21167 7415 13084 13093 25415 25415 0.003133943069997258 LEARDQAF 8 Unmodified _LEARDQAF_ 0 0 0 nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45 nc|ENSG00000213085|Q9UL16-2|CFAP45 nc|ENSG00000213085|Q9UL16-2|CFAP45 MSMS UPN46_class_I_Rep_3 1 475.254638671875 2 475.240524 948.466495 NaN NaN NaN NaN NaN NaN NaN 36.153 1 36.153 35.653 36.653 0 0 0 0 0.3903 1 6669 6669 11.64 0.52583 1 21168 5582 13085 13094 25416 25416 -0.009799761420026698 LEATKVLKV 9 Unmodified _LEATKVLKV_ 0 0 0 REV__nc|ENSG00000106384|Q86VF5-2|MOGAT3 REV__nc|ENSG00000106384|Q86VF5-2|MOGAT3 MULTI-MSMS UPN48_class_I_Rep_1 5 500.82366943359375 2 500.823692 999.632832 0.19986 0.0001001 -0.19393 -9.7125E-05 0.0059347 2.9722E-06 500.82355496544477 44.066 0.82202 47.579 47.324 48.146 3.5132 86 59 2 0 0 0 0.46869 1 8515 8515 3.9444 0 1 130570 + 21169 18326 13086 13095 25417 25417 0.13300077033841262 LEATVDLQL 9 Unmodified _LEATVDLQL_ 0 0 0 L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 501.2904968261719 2 501.279315 1000.54408 0.2079 0.00010422 0.20499 0.00010276 0.41289 0.00020697 501.2793956534524 77.89 0.57274 81.318 80.985 81.558 3.4289 95 54 2 0 0 0 0.30034 1 19363 19363 13.906 0 1 202710 21170 9057 13087 13096 25418 25418 0.04382617003534506 LEATVDLQL 9 Unmodified _LEATVDLQL_ 0 0 0 L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 501.2906494140625 2 501.279315 1000.54408 0.24965 0.00012514 0.15498 7.7691E-05 0.40463 0.00020283 501.2793533290315 78.049 0.59485 81.392 81.036 81.631 3.3428 91 63 2 0 0 0 0.17897 1 19389 19389 22.736 1.1993 1 159130 21171 9057 13087 13096 25419 25419 0.04382617003534506 LEATVDLQL 9 Unmodified _LEATVDLQL_ 0 0 0 L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 501.2904357910156 2 501.279315 1000.54408 NaN NaN NaN NaN NaN NaN NaN 77.745 1 81.087 80.587 81.587 3.3428 0 0 0 0.2408 1 19300 19300 13.906 0 1 21172 9057 13087 13096 25420 25420 0.04382617003534506 LEATVDLQL 9 Unmodified _LEATVDLQL_ 0 0 0 L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.279315 1000.54408 0.2575 0.00012908 0.22395 0.00011226 0.48145 0.00024134 501.2794041119749 78.128 0.58811 81.41 81.159 81.748 3.2816 0.036594 2.3108E-05 NaN 22.736 114 62 2 NaN NaN NaN NaN 0 NaN NaN 0 143100 21173 9057 13087 13096 0.04382617003534506 LEAVVTRI 8 Unmodified _LEAVVTRI_ 0 0 0 REV__L1ME2z_dup1039|chr2:229893065-229893818:-|1.183231120213835|0.0079492809688681|7.22|151.0|4|1|sense REV__L1ME2z_dup1039|chr2:229893065-229893818:-|1.183231120213835|0.0079492809688681|7.22|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.7789611816406 2 450.779285 899.544017 -0.24932 -0.00011239 0.16642 7.5021E-05 -0.082891 -3.7365E-05 450.77923504288503 48.022 0.76893 51.371 51.143 51.912 3.3492 91 47 3 0 0 0 0.82752 1 10289 10289 13.906 0 1 300140 + 21174 27898 13088 13097 25421 25421 0.09022661794188025 LEAVVTRI 8 Unmodified _LEAVVTRI_ 0 0 0 REV__L1ME2z_dup1039|chr2:229893065-229893818:-|1.183231120213835|0.0079492809688681|7.22|151.0|4|1|sense REV__L1ME2z_dup1039|chr2:229893065-229893818:-|1.183231120213835|0.0079492809688681|7.22|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 450.77935791015625 2 450.779285 899.544017 -0.28801 -0.00012983 0.11219 5.0574E-05 -0.17582 -7.9254E-05 450.77922538542845 48.264 0.83508 51.504 51.164 51.999 3.2405 97 47 3 0 0 0 0.82752 1 10386 10386 9.3831 0 1 306650 + 21175 27898 13088 13097 25422 25422 0.09022661794188025 LECILFSFVT 10 Unmodified _LECILFSFVT_ 0 0 0 REV__L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense REV__L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.3057861328125 2 586.307018 1170.59948 NaN NaN NaN NaN NaN NaN NaN 68.273 1 71.781 71.281 72.281 3.5083 0 0 0 0.53105 1 15736 15736 1.4819 0 1 + 21176 28055 13089 13098 25423 25423 0.02100707199633689 LECITLVICV 10 Unmodified _LECITLVICV_ 0 0 0 REV__ENSG00000188910|ENST00000373366|GJB3 REV__ENSG00000188910|ENST00000373366|GJB3 MSMS UPN47_class_I_Rep_2 3 553.3043823242188 2 553.303421 1104.59229 NaN NaN NaN NaN NaN NaN NaN 27.509 1 31.007 30.507 31.507 3.4986 0 0 0 0.53105 1 4140 4140 1.4819 0.28856 1 + 21177 20989 13090 13099 25424 25424 0.044176513275488105 LECSKELQTD 10 Unmodified _LECSKELQTD_ 0 0 0 HERVK9-int_dup313|chr7:152038616-152040933:-|1.1644613920390687|0.0517684275163903|4.49|151.0|62|3|sense HERVK9-int_dup313|chr7:152038616-152040933:-|1.1644613920390687|0.0517684275163903|4.49|151.0|62|3|sense HERVK9-int_dup313|chr7:152038616-152040933:-|1.1644613920390687|0.0517684275163903|4.49|151.0|62|3|sense MSMS UPN47_class_I_Rep_3 4 583.27392578125 2 583.273903 1164.53325 NaN NaN NaN NaN NaN NaN NaN 64.266 1 67.44 66.94 67.94 3.1741 0 0 0 0.53105 1 15358 15358 1.3295 0.25807 1 21178 8322 13091 13100 25425 25425 -0.04243153433071711 LECVGWNN 8 Unmodified _LECVGWNN_ 0 0 0 L1MEc_dup2046|chr2:37044968-37045972:-|2.423647789704566|0.0592631325014815|5.35|151.0|35|3|sense L1MEc_dup2046|chr2:37044968-37045972:-|2.423647789704566|0.0592631325014815|5.35|151.0|35|3|sense L1MEc_dup2046|chr2:37044968-37045972:-|2.423647789704566|0.0592631325014815|5.35|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 467.7082214355469 2 467.708002 933.401452 NaN NaN NaN NaN NaN NaN NaN 96.761 1 100.54 100.04 101.04 3.7767 0 0 0 0.40625 1 23988 23988 2.3027 0 1 21179 13077 13092 13101 25426 25426 -0.06791293939500065 LEDAIHTAIL 10 Unmodified _LEDAIHTAIL_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS UPN47_class_I_Rep_3 4 548.3052978515625 2 548.305864 1094.59717 0.26788 0.00014688 -0.086249 -4.7291E-05 0.18163 9.9589E-05 548.3056725620139 46.122 0.54386 49.366 49.015 49.559 3.2441 47 32 2 0 0 0 0.56078 1 9843 9843 3.2813 0 1 77500 21180 1794 13093 13102 25427 25427 0.05365994786166084 LEDFAVLGEG 10 Unmodified _LEDFAVLGEG_ 0 0 0 nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6 nc|ENSG00000165271|Q9H6R4-3|NOL6 nc|ENSG00000165271|Q9H6R4-3|NOL6 MULTI-MSMS UPN48_class_I_Rep_1 5 525.2612915039062 2 525.261122 1048.50769 0.32865 0.00017262 -0.0036166 -1.8997E-06 0.32503 0.00017072 525.2609132788207 75.825 0.29773 79.325 79.226 79.524 3.4996 39 30 2 0 0 0 0.52562 1 17984 17984 8.7454 0.58988 1 94240 21181 4169 13094 13103 25428 25428 -0.014622598931964603 LEDFLYHEGY 10 Unmodified _LEDFLYHEGY_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MULTI-MSMS UPN46_class_I_Rep_3 1 643.291015625 2 643.290411 1284.56627 0.68808 0.00044263 0.21558 0.00013868 0.90366 0.00058131 643.290503380558 64.263 0.23687 64.263 64.129 64.366 0 33 25 2 0 0 0 0.23322 1 14446 14446 40.239 28.744 1 235750 21182 1027 13095 13104 25429 25429 -0.0646320331870811 LEDFLYHEGY 10 Unmodified _LEDFLYHEGY_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MSMS UPN46_class_I_Rep_3 1 643.2908935546875 2 643.290411 1284.56627 NaN NaN NaN NaN NaN NaN NaN 64.434 1 64.434 63.934 64.934 0 0 0 0 0.53105 1 14500 14500 36.506 22.6 1 21183 1027 13095 13104 25430 25430 -0.0646320331870811 LEDGLFENI 9 Unmodified _LEDGLFENI_ 0 0 0 L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|3|1|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|3|1|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 525.3637084960938 2 525.261122 1048.50769 0.48658 0.00025558 -0.23658 -0.00012427 0.25 0.00013132 525.2608778692065 75.723 0.47203 79.289 79.062 79.534 3.5659 77 49 2 0 0 0 0.083569 1 17803 17803 26.268 1.2772 1 103320 21184 9715 13096 13105 25431 25431 -0.014622598931964603 LEDGRGWF 8 Unmodified _LEDGRGWF_ 0 0 0 REV__ENST00000258198.6_1_16:66757504-66757552:-|nuORF REV__ENST00000258198.6_1_16:66757504-66757552:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.23492431640625 2 490.235242 978.45593 -0.11176 -5.4787E-05 0.070026 3.4329E-05 -0.041732 -2.0458E-05 490.2352114941017 38.057 0.8071 41.444 41.121 41.928 3.3879 114 65 2 0 0 0 0.82752 1 7429 7429 4.756 4.756 1 108520 + 21185 21542 13097 13106 25432 25432 -0.03415958796426821 LEDGRGWF 8 Unmodified _LEDGRGWF_ 0 0 0 REV__ENST00000258198.6_1_16:66757504-66757552:-|nuORF REV__ENST00000258198.6_1_16:66757504-66757552:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.2351379394531 2 490.235242 978.45593 -0.30909 -0.00015153 0.24929 0.00012221 -0.059798 -2.9315E-05 490.23531441859564 38.265 0.98372 41.507 41.133 42.117 3.2414 90 74 2 0 0 0 0.82752 1 7411 7411 8.5933 8.5933 1 98333 + 21186 21542 13097 13106 25433 25433 -0.03415958796426821 LEDIMRILAK 10 Unmodified _LEDIMRILAK_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MSMS UPN48_class_I_Rep_3 7 601.5187377929688 2 601.352291 1200.69003 NaN NaN NaN NaN NaN NaN NaN 78.965 1 82.587 82.087 83.087 3.6216 0 0 0 0.53105 1 18709 18709 1.6526 0 1 21187 2410 13098 13107 25434 25434 0.09771176247909352 LEDLVNHY 8 Unmodified _LEDLVNHY_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN46_class_I_Rep_3 1 501.7481689453125 2 501.748182 1001.48181 0.27565 0.00013831 0.01472 7.3855E-06 0.29037 0.00014569 501.7481060110467 46.397 0.58623 46.397 46.134 46.72 0 135 62 3 0 0 0 0.82752 2 9476 9476;9510 62.573 26.446 1 338120 21188 3716 13099 13108 25435;25436 25435 -0.018871093448183274 LEDRKNRD 8 Unmodified _LEDRKNRD_ 0 0 0 REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MSMS UPN47_class_I_Rep_2 3 523.2893676757812 2 523.272887 1044.53122 NaN NaN NaN NaN NaN NaN NaN 66.553 1 69.812 69.312 70.312 3.2588 0 0 0 0.40292 1 15996 15996 6.7232 0 1 + 21189 18050 13100 13109 25437 25437 0.010735986639929251 LEDRSKKIT 9 Unmodified _LEDRSKKIT_ 0 0 0 REV__nc|ENSG00000153157|Q5T4T6-2|SYCP2L REV__nc|ENSG00000153157|Q5T4T6-2|SYCP2L MSMS UPN47_class_I_Rep_1 2 545.3167114257812 2 545.316763 1088.61897 NaN NaN NaN NaN NaN NaN NaN 84.561 1 88.126 87.626 88.626 3.5655 0 0 0 0.39518 1 21156 21156 1.8442 0 1 + 21190 19705 13101 13110 25438 25438 0.07820799534761136 LEDSHSLI 8 Unmodified _LEDSHSLI_ 0 0 0 L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|34|2|sense;L1M4c_dup1409|chr7:67217008-67217846:-|1.0376094785003296|0.0466978014352553|4.47|151.0|23|3|sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|34|2|sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|34|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2347106933594 2 457.234907 912.455261 -0.34727 -0.00015879 0.18542 8.4779E-05 -0.16186 -7.4006E-05 457.2348731874281 36.224 0.79566 39.893 39.549 40.345 3.6692 134 57 3 0 0 0 0.82752 1 6753 6753 32.117 0 1 402710 21191 9035 13102 13111 25439 25439 -0.004467982361234135 LEDVVRAY 8 Unmodified _LEDVVRAY_ 0 0 0 nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A nc|ENSG00000107581|Q14152-2|EIF3A MSMS UPN46_class_I_Rep_3 1 482.796142578125 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 44.749 1 44.749 44.249 45.249 0 0 0 0 0.28403 1 9040 9040 34.402 15.145 1 21192 1822 13103 13112 25440 25440 0.019334810348595965 LEDWFFKI 8 Unmodified _LEDWFFKI_ 0 0 0 L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|77|3|sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|77|3|sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|77|3|sense MSMS UPN48_class_I_Rep_2 6 549.2865600585938 2 549.286943 1096.55933 NaN NaN NaN NaN NaN NaN NaN 38.398 1 42.114 41.614 42.614 3.7164 0 0 0 0.4044 1 6687 6687 4.756 0 1 21193 13819 13104 13113 25441 25441 0.014915285913730258 LEDWFFKI 8 Unmodified _LEDWFFKI_ 0 0 0 L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|77|3|sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|77|3|sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|77|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.287109375 2 549.286943 1096.55933 0.33937 0.00018641 -1.4716 -0.00080835 -1.1323 -0.00062193 549.286074545603 38.634 0.54546 42.293 42.039 42.585 3.6595 90 54 2 0 0 0 0.82752 1 6691 6691 7.9102 0 1 167920 21194 13819 13104 13113 25442 25442 0.014915285913730258 LEDYLRLK 8 Unmodified _LEDYLRLK_ 0 0 0 nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-10|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 MULTI-MSMS UPN48_class_I_Rep_1 5 525.30078125 2 525.303124 1048.5917 0.31931 0.00016774 -0.46153 -0.00024244 -0.14221 -7.4705E-05 525.3027710053738 40.286 0.41628 43.791 43.565 43.982 3.5048 45 32 2 0 0 0 0.82752 1 7200 7200 7.9102 0 1 92875 21195 1829 13105 13114 25443 25443 0.06934315994340068 LEEEYRKF 8 Unmodified _LEEEYRKF_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MULTI-MSMS UPN48_class_I_Rep_1 5 557.2822265625 2 557.282389 1112.55022 0.4861 0.0002709 -0.11149 -6.2129E-05 0.37462 0.00020877 557.2824042243473 42.614 0.59118 46.122 45.893 46.485 3.5079 70 45 2 0 0 0 0.82752 1 7894 7894 11.64 0 1 126120 + 21196 19524 13106 13115 25444 25444 -0.001548647649542545 LEEEYRKF 8 Unmodified _LEEEYRKF_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MULTI-MSMS UPN48_class_I_Rep_2 6 557.282470703125 2 557.282389 1112.55022 0.43176 0.00024061 0.044082 2.4566E-05 0.47584 0.00026518 557.2823008556405 42.261 0.63141 46.019 45.741 46.373 3.7579 121 60 3 0 0 0 0.82752 1 7782 7782 11.64 0 1 182650 + 21197 19524 13106 13115 25445 25445 -0.001548647649542545 LEEEYRKF 8 Unmodified _LEEEYRKF_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MULTI-MSMS UPN48_class_I_Rep_2 6 557.2828369140625 2 557.282389 1112.55022 0.40191 0.00022398 0.19027 0.00010604 0.59218 0.00033001 557.2823929059605 46.894 0.59261 50.644 50.385 50.978 3.7494 88 45 3 0 0 0 0.82752 1 9243 9243 11.64 0 1 258630 + 21198 19524 13106 13115 25446 25446 -0.001548647649542545 LEEEYRKF 8 Unmodified _LEEEYRKF_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MULTI-MSMS UPN48_class_I_Rep_3 7 557.283203125 2 557.282389 1112.55022 0.32167 0.00017926 0.10849 6.0462E-05 0.43017 0.00023972 557.2823519163537 42.53 0.64404 46.172 45.822 46.467 3.6415 86 50 2 0 0 0 0.82752 2 7787 7787;7826 7.2892 0 1 157950 + 21199 19524 13106 13115 25447;25448 25447 -0.001548647649542545 LEEEYRKF 8 Unmodified _LEEEYRKF_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MULTI-MSMS UPN48_class_I_Rep_3 7 557.2828369140625 2 557.282389 1112.55022 0.32863 0.00018314 0.16159 9.0054E-05 0.49022 0.00027319 557.2825385635035 47.138 0.49949 50.774 50.479 50.978 3.6363 58 36 2 0 0 0 0.82752 1 9208 9208 8.5933 0 1 211930 + 21200 19524 13106 13115 25449 25449 -0.001548647649542545 LEELAGINL 9 Unmodified _LEELAGINL_ 0 0 0 REV__ENSG00000174776|ENST00000682715|WDR49 REV__ENSG00000174776|ENST00000682715|WDR49 MULTI-SECPEP UPN47_class_I_Rep_3 4 485.81182861328125 2 486.274032 970.533512 0.1424 6.9246E-05 -0.66519 -0.00032347 -0.52279 -0.00025422 486.27373203448934 65.719 0.29826 68.899 68.685 68.983 3.1795 23 17 2 0 0 0 0.12354 1 15807 15807 3.5965 0 1 57177 + 21201 20532 13107 13116 25450 25450 0.0470663434908829 LEELAKVSEE 10 Unmodified _LEELAKVSEE_ 0 0 0 nc|ENSG00000189367|Q6ZU52-2|KIAA0408;ENST00000368281.1_1_6:127765256-127771512:-|nuORF;ENSG00000189367|ENST00000483725|KIAA0408 nc|ENSG00000189367|Q6ZU52-2|KIAA0408 nc|ENSG00000189367|Q6ZU52-2|KIAA0408 MSMS UPN48_class_I_Rep_3 7 573.8206176757812 2 573.798069 1145.58158 NaN NaN NaN NaN NaN NaN NaN 68.108 1 71.615 71.115 72.115 3.5077 0 0 0 0.53105 1 15596 15596 1.3295 0.63916 1 21202 5276 13108 13117 25451 25451 0.014616634784943017 LEELNLLNR 9 Unmodified _LEELNLLNR_ 0 0 0 REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|2|1|sense REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 557.3168334960938 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 70.118 1 73.489 72.989 73.989 3.3713 0 0 0 0.39428 1 17024 17024 2.0598 0 1 + 21203 27123 13109 13118 25452 25452 0.06716799534774509 LEELVARF 8 Unmodified _LEELVARF_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS UPN46_class_I_Rep_3 1 488.776611328125 2 488.776742 975.538931 NaN NaN NaN NaN NaN NaN NaN 60.691 1 60.691 60.191 61.191 0 0 0 0 0.3108 1 13473 13473 30.637 5.2372 1 21204 1520 13110 13119 25453 25453 0.05018357931567152 LEENIEVKF 9 Unmodified _LEENIEVKF_ 0 0 0 L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|58|2|sense L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|58|2|sense L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|58|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.79736328125 2 560.797872 1119.58119 0.44912 0.00025187 -0.43164 -0.00024206 0.017482 9.8038E-06 560.7974947441052 71.938 0.47599 75.157 74.889 75.365 3.2188 47 38 2 0 0 0 0.28552 1 17646 17646 14.838 0 1 46797 21205 8941 13111 13120 25454 25454 0.026182885492971764 LEEPIKVKVEV 11 Unmodified _LEEPIKVKVEV_ 0 0 0 REV__ENST00000560710.1_1_15:79184565-79186592:+|nuORF REV__ENST00000560710.1_1_15:79184565-79186592:+|nuORF MSMS UPN47_class_I_Rep_3 4 641.8829956054688 2 641.884478 1281.7544 NaN NaN NaN NaN NaN NaN NaN 89.713 1 93.11 92.61 93.61 3.3976 0 0 0 0.38417 1 22492 22492 0.96228 0.43751 1 + 21206 20863 13112 13121 25455 25455 0.12479654605704127 LEERKKFQW 9 Unmodified _LEERKKFQW_ 0 0 0 REV__L1ME1_dup19191|chr10:21967047-21967421:-|1.42567306916641|0.0085866391668076|7.38|151.0|6|2|sense REV__L1ME1_dup19191|chr10:21967047-21967421:-|1.42567306916641|0.0085866391668076|7.38|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 632.34521484375 2 632.345855 1262.67716 NaN NaN NaN NaN NaN NaN NaN 52.453 1 52.453 51.953 52.953 0 0 0 0 0.4007 1 11217 11217 0.52476 0 1 + 21207 27651 13113 13122 25456 25456 0.056324811800323005 LEETERDLKA 10 Unmodified _LEETERDLKA_ 0 0 0 REV__nc|ENSG00000107223|O60869-2|EDF1 REV__nc|ENSG00000107223|O60869-2|EDF1 MSMS UPN48_class_I_Rep_2 6 602.3131713867188 2 602.314417 1202.61428 NaN NaN NaN NaN NaN NaN NaN 18.843 1 22.494 21.994 22.994 3.6509 0 0 0 0.53105 1 1330 1330 1.6526 0 1 + 21208 18350 13114 13123 25457 25457 0.021078706013213377 LEEVWGMY 8 Unmodified _LEEVWGMY_ 0 0 0 L1MD2_dup3350|chr5:176309943-176310863:+|1.0477498524169493|0.265229905058228|1.98|151.0|24|2|sense L1MD2_dup3350|chr5:176309943-176310863:+|1.0477498524169493|0.265229905058228|1.98|151.0|24|2|sense L1MD2_dup3350|chr5:176309943-176310863:+|1.0477498524169493|0.265229905058228|1.98|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 513.737548828125 2 513.733686 1025.45282 NaN NaN NaN NaN NaN NaN NaN 64.308 1 64.308 63.808 64.808 0 0 0 0 0.40738 1 14467 14467 0.79363 0 1 21209 11988 13115 13124 25458 25458 -0.05888969965440083 LEFEKRQLH 9 Unmodified _LEFEKRQLH_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 600.330322265625 2 600.330205 1198.64586 0.42545 0.00025541 -0.079646 -4.7814E-05 0.34581 0.0002076 600.3301286703099 43.577 0.89588 47.087 46.771 47.667 3.5103 119 77 2 0 0 0 0.24936 1 8115 8115 17.113 2.7075 1 284420 21210 425 13116 13125 25459 25459 0.05447908145947622 LEFEKRQLH 9 Unmodified _LEFEKRQLH_ 0 0 0 CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant;ENSG00000015133|ENST00000389857|CCDC88C CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant CCDC88C|p.I1535Hfs*12|1|0.22|ENSG00000015133|chr14:91283356-91283357|-/G|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 600.3307495117188 2 600.330205 1198.64586 0.41438 0.00024876 -0.11463 -6.8815E-05 0.29975 0.00017995 600.3301238068926 43.172 0.96346 46.934 46.526 47.489 3.7617 162 75 3 0 0 0 0.24936 2 8152 7993;8152 17.113 2.7075 1 335880 21211 425 13116 13125 25460;25461 25461 0.05447908145947622 LEFESAQF 8 Unmodified _LEFESAQF_ 0 0 0 ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B ENST00000491056.5_1_2:113587940-113590763:-|nuORF ENST00000491056.5_1_2:113587940-113590763:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 485.7295837402344 2 485.729458 969.444362 0.22855 0.00011102 0.030386 1.4759E-05 0.25894 0.00012577 485.7292864825648 67.886 0.11021 67.886 67.84 67.95 0 19 12 2 0 0 0 0.82752 1 15469 15469 36.127 14.38 1 148350 21212 2506 13117 13126 25462 25462 -0.04158200610413587 LEFHVLSKL 9 Unmodified _LEFHVLSKL_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|78|1|anti-sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|78|1|anti-sense MSMS UPN46_class_I_Rep_3 1 543.3201904296875 2 543.321317 1084.62808 NaN NaN NaN NaN NaN NaN NaN 66.529 1 66.529 66.029 67.029 0 0 0 0 0.3377 1 15100 15100 8.7454 0 1 + 21213 25501 13118 13127 25463 25463 0.08915192891095103 LEFLHENEY 9 Unmodified _LEFLHENEY_ 0 0 0 ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3 ENST00000600284.5_1_19:50490096-50500767:-|nuORF ENST00000600284.5_1_19:50490096-50500767:-|nuORF MSMS UPN46_class_I_Rep_3 1 597.2772827148438 2 597.277303 1192.54005 NaN NaN NaN NaN NaN NaN NaN 57.478 1 57.478 56.978 57.978 0 0 0 0 0.17222 1 12598 12598 18.146 0 1 21214 1715 13119 13128 25464 25464 -0.04851472490190645 LEFLILCLK 9 Unmodified _LEFLILCLK_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|100|1|anti-sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|100|1|anti-sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|100|1|anti-sense MSMS UPN48_class_I_Rep_2 6 546.3316650390625 2 546.330296 1090.64604 NaN NaN NaN NaN NaN NaN NaN 68.677 1 72.185 71.685 72.685 3.5083 0 0 0 0.37476 1 15854 15854 6.7232 0 1 21215 12446 13120 13129 25465 25465 0.10434191821582317 LEFLVNVH 8 Unmodified _LEFLVNVH_ 0 0 0 REV__Charlie1a_dup2295|chr6:107397136-107398570:+|1.7386637925395068|0.0362883842133682|5.58|151.0|91|3|anti-sense REV__Charlie1a_dup2295|chr6:107397136-107398570:+|1.7386637925395068|0.0362883842133682|5.58|151.0|91|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.7717590332031 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 21.723 1 25.276 24.776 25.776 3.5533 0 0 0 0.40746 1 2025 2025 0.69038 0 1 + 21216 17309 13121 13130 25466 25466 0.0423837527713431 LEFPAQEL 8 Unmodified _LEFPAQEL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS UPN48_class_I_Rep_1 5 473.74761962890625 2 473.74765 945.480748 0.15791 7.4811E-05 -0.54136 -0.00025647 -0.38345 -0.00018166 473.7473804124509 67.663 0.48694 71.115 70.784 71.271 3.4517 55 35 2 0 0 0 0.82752 1 15562 15562 13.042 0.51092 1 84812 21217 5292 13122 13131 25467 25467 0.0058267628628527746 LEFPAQEL 8 Unmodified _LEFPAQEL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS UPN48_class_I_Rep_3 7 473.7476501464844 2 473.74765 945.480748 0.26178 0.00012402 -0.60635 -0.00028726 -0.34457 -0.00016324 473.74740118576193 67.32 0.55743 70.828 70.619 71.176 3.5077 68 49 2 0 0 0 0.82752 2 15367 15367;15404 13.042 2.66 1 99381 21218 5292 13122 13131 25468;25469 25468 0.0058267628628527746 LEFRAIPIP 9 Unmodified _LEFRAIPIP_ 0 0 0 REV__ENST00000245923.8_1_19:45997467-45997899:-|nuORF REV__ENST00000245923.8_1_19:45997467-45997899:-|nuORF MSMS UPN48_class_I_Rep_1 5 528.3163452148438 2 528.316035 1054.61752 NaN NaN NaN NaN NaN NaN NaN 66.373 1 69.825 69.325 70.325 3.4516 0 0 0 0.28335 1 15173 15173 11.64 0.81637 1 + 21219 21515 13123 13132 25470 25470 0.09239210236660256 LEGCSSWAY 9 Unmodified _LEGCSSWAY_ 0 0 0 L1MEg_dup5411|chr6:2829575-2830567:-|1.2269243776119363|0.1010175887228692|3.6|151.0|77|3|anti-sense L1MEg_dup5411|chr6:2829575-2830567:-|1.2269243776119363|0.1010175887228692|3.6|151.0|77|3|anti-sense L1MEg_dup5411|chr6:2829575-2830567:-|1.2269243776119363|0.1010175887228692|3.6|151.0|77|3|anti-sense MSMS UPN46_class_I_Rep_3 1 508.2115783691406 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 44.334 1 44.334 43.834 44.834 0 0 0 0 0.38299 1 8926 8926 4.756 0.81161 1 21220 13398 13124 13133 25471 25471 -0.09494731004940604 LEGDSELYFS 10 Unmodified _LEGDSELYFS_ 0 0 0 REV__ENST00000439074.1_1_3:193561448-193561538:-|nuORF REV__ENST00000439074.1_1_3:193561448-193561538:-|nuORF MSMS UPN46_class_I_Rep_3 1 580.2613525390625 2 580.261319 1158.50808 NaN NaN NaN NaN NaN NaN NaN 86.317 1 86.317 85.817 86.817 0 0 0 0 0.53105 1 20635 20635 3.2813 0.28607 1 + 21221 22322 13125 13134 25472 25472 -0.06482884963975266 LEGEEPEVL 9 Unmodified _LEGEEPEVL_ 0 0 0 ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENST00000401087.3_3_1:149089877-149094694:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 508.30157470703125 2 507.75313 1013.49171 0.26735 0.00013575 -0.14747 -7.488E-05 0.11988 6.0869E-05 507.75294553619005 54.822 0.57687 58.331 58.059 58.636 3.5082 59 38 2 0 0 0 0.18929 1 11631 11631 21.747 1.293 1 150520 21222 6598 13126 13135 25473 25473 -0.014499661300874322 LEGEEPEVL 9 Unmodified _LEGEEPEVL_ 0 0 0 ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENST00000401087.3_3_1:149089877-149094694:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 507.7529296875 2 507.75313 1013.49171 0.42233 0.00021444 -0.33885 -0.00017205 0.083481 4.2388E-05 507.7528740133714 54.822 0.57443 58.403 58.056 58.631 3.5817 56 35 2 0 0 0 0.33654 1 11588 11588 11.64 0 1 165070 21223 6598 13126 13135 25474 25474 -0.014499661300874322 LEGGLLYAF 9 Unmodified _LEGGLLYAF_ 0 0 0 nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ENST00000465256.5_1_1:32201179-32202160:-|nuORF;ADGRB3|p.F1132Lfs*12|1|0.06|ENSG00000135298|chr6:69339437-69339437|T/-|frameshift_variant;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000135298|ENST00000370598|ADGRB3 nc|ENSG00000121753|O60241-4|ADGRB2;ENSG00000135298|ENST00000370598|ADGRB3 nc|ENSG00000121753|O60241-4|ADGRB2 MULTI-MSMS UPN46_class_I_Rep_3 1 491.76568603515625 2 491.765843 981.517133 0.23698 0.00011654 -0.28976 -0.00014249 -0.052779 -2.5955E-05 491.76564413459573 64.979 0.33759 64.979 64.928 65.265 0 47 36 3 0 0 0 0.17468 1 14664 14664 23.148 1.4018 1 150770 21224 2364;2895 13127 13136 25475 25475 0.025635531829948377 LEGKICMWH 9 Unmodified _LEGKICMWH_ 0 0 0 MER51-int_dup441|chr14:34442204-34442951:+|1.244581403713582|0.0841216856159592|3.89|151.0|16|3|sense MER51-int_dup441|chr14:34442204-34442951:+|1.244581403713582|0.0841216856159592|3.89|151.0|16|3|sense MER51-int_dup441|chr14:34442204-34442951:+|1.244581403713582|0.0841216856159592|3.89|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 558.7691040039062 2 558.77008 1115.52561 NaN NaN NaN NaN NaN NaN NaN 73.64 1 77.218 76.718 77.718 3.5779 0 0 0 0.39518 1 17300 17300 1.8442 0.36234 1 21225 16077 13128 13137 25476 25476 -0.02753539443688169 LEGLPLIK 8 Unmodified _LEGLPLIK_ 0 0 0 ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC MULTI-MSMS UPN48_class_I_Rep_1 5 441.7860412597656 2 441.786579 881.558604 0.064441 2.8469E-05 0.23979 0.00010594 0.30424 0.00013441 441.78659591248936 56.792 0.81395 60.294 59.971 60.785 3.5014 108 69 2 0 0 0 0.82752 3 12203 12203;12242;12282 52.268 4.5197 1 376100 21226 2306 13129 13138 25477;25478;25479 25477 0.11308733942337312 LEGLPLIK 8 Unmodified _LEGLPLIK_ 0 0 0 ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC MULTI-MSMS UPN48_class_I_Rep_2 6 441.7867126464844 2 441.786579 881.558604 0.23667 0.00010456 0.23049 0.00010183 0.46716 0.00020639 441.78648723981894 56.783 0.89975 60.316 59.989 60.889 3.5333 156 81 3 0 0 0 0.82752 3 12172 12172;12208;12252 37.974 3.5723 1 303950 21227 2306 13129 13138 25480;25481;25482 25480 0.11308733942337312 LEGLPLIK 8 Unmodified _LEGLPLIK_ 0 0 0 ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC MULTI-MSMS UPN48_class_I_Rep_3 7 441.78656005859375 2 441.786579 881.558604 0.058251 2.5735E-05 0.1547 6.8344E-05 0.21295 9.4079E-05 441.78655089925496 56.652 0.72684 60.194 59.929 60.656 3.5427 119 72 2 0 0 0 0.82752 3 12073 12073;12111;12151 61.357 5.1804 1 364890 21228 2306 13129 13138 25483;25484;25485 25483 0.11308733942337312 LEGSVAIAGAV 11 Unmodified _LEGSVAIAGAV_ 0 0 0 ENST00000505994.1_1_4:120314876-120316112:-|nuORF;nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;nc|ENSG00000198814|P32189-2|GK;ENSG00000229894|ENST00000505354|GK3;ENSG00000196475|ENST00000358842|GK2;ENSG00000198814|ENST00000427190|GK ENST00000505994.1_1_4:120314876-120316112:-|nuORF ENST00000505994.1_1_4:120314876-120316112:-|nuORF MSMS UPN47_class_I_Rep_1 2 493.7794189453125 2 493.779482 985.544411 NaN NaN NaN NaN NaN NaN NaN 66.538 1 69.896 69.396 70.396 3.3576 0 0 0 0.20858 1 15945 15945 17.113 1.8644 1 21229 5310 13130 13139 25486 25486 0.05106036723384477 LEGSVAIAGAV 11 Unmodified _LEGSVAIAGAV_ 0 0 0 ENST00000505994.1_1_4:120314876-120316112:-|nuORF;nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;nc|ENSG00000198814|P32189-2|GK;ENSG00000229894|ENST00000505354|GK3;ENSG00000196475|ENST00000358842|GK2;ENSG00000198814|ENST00000427190|GK ENST00000505994.1_1_4:120314876-120316112:-|nuORF ENST00000505994.1_1_4:120314876-120316112:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.77947998046875 2 493.779482 985.544411 0.20693 0.00010218 0.35651 0.00017603 0.56343 0.00027821 493.7795818717527 66.806 0.50057 70.065 69.807 70.308 3.2588 42 36 2 0 0 0 0.33678 1 16081 16081 12.241 3.4953 1 116440 21230 5310 13130 13139 25487 25487 0.05106036723384477 LEGVIDRY 8 Unmodified _LEGVIDRY_ 0 0 0 nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9 nc|ENSG00000100505|Q9C026-5|TRIM9 nc|ENSG00000100505|Q9C026-5|TRIM9 MSMS UPN46_class_I_Rep_3 1 482.79547119140625 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 45.024 1 45.024 44.524 45.524 0 0 0 0 0.388 1 9117 9117 12.532 3.1841 1 21231 1511 13131 13140 25488 25488 0.01933481034848228 LEGVPELLQ 9 Unmodified _LEGVPELLQ_ 0 0 0 ENSG00000076513|ENST00000261739|ANKRD13A ENSG00000076513|ENST00000261739|ANKRD13A ENSG00000076513|ENST00000261739|ANKRD13A MULTI-MSMS UPN47_class_I_Rep_3 4 499.2814025878906 2 499.281857 996.549162 0.089761 4.4816E-05 0.034324 1.7137E-05 0.12408 6.1953E-05 499.2817675365001 46.51 1.4553 49.754 49.238 50.693 3.2439 226 91 3 0 0 0 0.48846 1 10198 10198 1.8442 0 1 1292600 21232 1158 13132 13141 25489 25489 0.050749208661500234 LEHEYIQNF 9 Unmodified _LEHEYIQNF_ 0 0 0 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MULTI-MSMS UPN47_class_I_Rep_1 2 596.7857055664062 2 596.785296 1191.55604 0.16797 0.00010024 0.29812 0.00017791 0.46609 0.00027816 596.7854425313815 47.044 0.39591 50.739 50.577 50.973 3.6951 36 25 2 0 0 0 0.47197 2 10020 10020;10074 3.5965 0.31518 1 77147 21233 1570 13133 13142 25490;25491 25490 -0.032077662532856266 LEHEYIQNF 9 Unmodified _LEHEYIQNF_ 0 0 0 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MSMS UPN47_class_I_Rep_3 4 596.7857666015625 2 596.785296 1191.55604 NaN NaN NaN NaN NaN NaN NaN 47.617 1 50.858 50.358 51.358 3.2405 0 0 0 0.17222 1 10291 10291 18.146 3.741 1 21234 1570 13133 13142 25492 25492 -0.032077662532856266 LEHGVVYEY 9 Unmodified _LEHGVVYEY_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1 ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS UPN46_class_I_Rep_3 1 555.2692260742188 2 554.769114 1107.52368 0.38298 0.00021247 -1.8875 -0.0010471 -1.5045 -0.00083467 555.2695494846812 46.028 0.04007 46.028 46.002 46.042 0 6 3 2 0 0 0 0.35081 1 9408 9408 10.824 1.4765 1 141940 21235 2445 13134 13143 25493 25493 -0.025785536562807465 LEHKTLNY 8 Unmodified _LEHKTLNY_ 0 0 0 L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|45|2|sense L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|45|2|sense L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|45|2|sense MSMS UPN47_class_I_Rep_2 3 509.2840576171875 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 39.873 1 43.245 42.745 43.745 3.3712 0 0 0 0.3903 1 7880 7880 11.64 2.2929 1 21236 15308 13135 13144 25494 25494 0.021491699262014663 LEHLGTSF 8 Unmodified _LEHLGTSF_ 0 0 0 REV__ENST00000046640.7_1_17:3561399-3563180:+|nuORF REV__ENST00000046640.7_1_17:3561399-3563180:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.2318115234375 2 452.232168 902.449782 0.11733 5.3062E-05 0.058983 2.6674E-05 0.17632 7.9736E-05 452.2321441335693 61.262 0.58173 61.262 60.959 61.541 0 104 66 2 0 0 0 0.82752 3 13621 13551;13621;13648 50.855 9.0154 1 300390 + 21237 21460 13136 13145 25495;25496;25497 25496 -0.005344770279521072 LEHLKKRNEI 10 Unmodified _LEHLKKRNEI_ 0 0 0 REV__L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|129|3|sense REV__L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|129|3|sense MSMS UPN48_class_I_Rep_3 7 640.3780517578125 2 640.377686 1278.74082 NaN NaN NaN NaN NaN NaN NaN 117.01 1 120.64 120.14 121.14 3.6312 0 0 0 0.53105 1 27844 27844 0.40072 0 1 + 21238 29576 13137 13146 25498 25498 0.11259841617152233 LEHTHLLIK 9 Unmodified _LEHTHLLIK_ 0 0 0 Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|168|3|anti-sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|168|3|anti-sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|168|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.3325805664062 2 552.332216 1102.64988 0.50107 0.00027676 0.62974 0.00034783 1.1308 0.00062458 552.3321756768522 50.247 0.95264 53.772 53.364 54.317 3.5246 116 63 3 0 0 0 0.28552 1 10262 10262 14.838 1.7958 1 308590 21239 32994 13138 13147 25499 25499 0.10265997639658053 LEHTHLLIK 9 Unmodified _LEHTHLLIK_ 0 0 0 Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|168|3|anti-sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|168|3|anti-sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|168|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.332275390625 2 552.332216 1102.64988 0.45581 0.00025176 0.60442 0.00033384 1.0602 0.0005856 552.3321799707367 50.079 0.84282 53.773 53.463 54.306 3.6946 91 55 3 0 0 0 0.21527 1 10203 10203 19.257 2.1441 1 396210 21240 32994 13138 13147 25500 25500 0.10265997639658053 LEIFFNCC 8 Unmodified _LEIFFNCC_ 0 0 0 HAL1_dup8993|chr6:82189048-82189717:+|1.097505397668734|0.117384135558654|3.22|151.0|35|2|anti-sense HAL1_dup8993|chr6:82189048-82189717:+|1.097505397668734|0.117384135558654|3.22|151.0|35|2|anti-sense HAL1_dup8993|chr6:82189048-82189717:+|1.097505397668734|0.117384135558654|3.22|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.7186279296875 2 494.716981 987.41941 0.21995 0.00010881 1.3396 0.00066274 1.5596 0.00077155 494.7174062808445 49.184 0.53931 52.531 52.245 52.784 3.3465 59 37 2 0 0 0 0.82752 1 10639 10639 2.5775 1.7838 1 126240 21241 7919 13139 13148 25501 25501 -0.07480295009008842 LEIFFNCC 8 Unmodified _LEIFFNCC_ 0 0 0 HAL1_dup8993|chr6:82189048-82189717:+|1.097505397668734|0.117384135558654|3.22|151.0|35|2|anti-sense HAL1_dup8993|chr6:82189048-82189717:+|1.097505397668734|0.117384135558654|3.22|151.0|35|2|anti-sense HAL1_dup8993|chr6:82189048-82189717:+|1.097505397668734|0.117384135558654|3.22|151.0|35|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 494.716981 987.41941 -0.021435 -1.0604E-05 1.91 0.00094491 1.8886 0.0009343 494.71780844877264 48.797 0.34949 52.479 52.3 52.649 3.6819 0.080352 -0.00021839 NaN 2.5775 32 23 2 NaN NaN NaN NaN 0 NaN NaN 0 192500 21242 7919 13139 13148 -0.07480295009008842 LEIKLKKLFH 10 Unmodified _LEIKLKKLFH_ 0 0 0 REV__L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense REV__L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 634.37744140625 2 634.908091 1267.80163 0.63451 0.00040286 0.60578 0.00038462 1.2403 0.00078747 634.9083473607162 104.87 0.069839 108.41 108.38 108.45 3.5327 16 10 2 0 0 0 0.84575 1 25462 25462 3.5965 0 1 3903500 + 21243 25398 13140 13149 25502 25502 0.17843978667360716 LEILLIIQPAL 11 Unmodified _LEILLIIQPAL_ 0 0 0 REV__ENST00000461177.1_1_9:107526521-107531179:+|nuORF REV__ENST00000461177.1_1_9:107526521-107531179:+|nuORF MSMS UPN46_class_I_Rep_3 1 618.727294921875 2 618.402307 1234.79006 NaN NaN NaN NaN NaN NaN NaN 112.47 1 112.47 111.97 112.97 0 0 0 0 0.38417 1 27764 27764 1.3295 0 1 + 21244 22430 13141 13150 25503 25503 0.18205736853383314 LEILLIIQPAL 11 Unmodified _LEILLIIQPAL_ 0 0 0 REV__ENST00000461177.1_1_9:107526521-107531179:+|nuORF REV__ENST00000461177.1_1_9:107526521-107531179:+|nuORF MSMS UPN46_class_I_Rep_3 1 618.1998291015625 2 618.402307 1234.79006 NaN NaN NaN NaN NaN NaN NaN 115.47 1 115.47 114.97 115.97 0 0 0 0 0.38417 1 28558 28558 1.3295 0 1 + 21245 22430 13141 13150 25504 25504 0.18205736853383314 LEIMDWWP 8 Unmodified _LEIMDWWP_ 0 0 0 ENST00000435844.3_2_20:18550009-18550057:+|nuORF ENST00000435844.3_2_20:18550009-18550057:+|nuORF ENST00000435844.3_2_20:18550009-18550057:+|nuORF MSMS UPN47_class_I_Rep_3 4 545.2734375 2 545.257328 1088.5001 NaN NaN NaN NaN NaN NaN NaN 18.794 1 22.148 21.648 22.648 3.3545 0 0 0 0.40738 1 1633 1633 0.79363 0 1 21246 6749 13142 13151 25505 25505 -0.040606906944731236 LEIRKLAIVGG 11 Unmodified _LEIRKLAIVGG_ 0 0 0 L1ME3A_dup10499|chr11:66086970-66087231:-|1.1075880458288034|0.0067674594086072|7.35|151.0|11|3|sense L1ME3A_dup10499|chr11:66086970-66087231:-|1.1075880458288034|0.0067674594086072|7.35|151.0|11|3|sense L1ME3A_dup10499|chr11:66086970-66087231:-|1.1075880458288034|0.0067674594086072|7.35|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 584.8739624023438 2 584.874248 1167.73394 NaN NaN NaN NaN NaN NaN NaN 98.152 1 98.152 97.652 98.652 0 0 0 0 0.38417 1 23898 23898 1.0715 0.5467 1 21247 12617 13143 13152 25506 25506 0.15678528736521002 LEIRLAYLT 9 Unmodified _LEIRLAYLT_ 0 0 0 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 MSMS UPN47_class_I_Rep_1 2 546.3275756835938 2 546.326599 1090.63865 NaN NaN NaN NaN NaN NaN NaN 92.4 1 96.121 95.621 96.621 3.7209 0 0 0 0.37476 1 23027 23027 6.7232 2.3939 1 + 21248 19224 13144 13153 25507 25507 0.09695175545516577 LEISGKVLV 9 Unmodified _LEISGKVLV_ 0 0 0 MLT1K_dup424|chr1:44489620-44489842:-|4.124055014815716|0.0011475761223538|11.81|150.0|15|3|anti-sense MLT1K_dup424|chr1:44489620-44489842:-|4.124055014815716|0.0011475761223538|11.81|150.0|15|3|anti-sense MLT1K_dup424|chr1:44489620-44489842:-|4.124055014815716|0.0011475761223538|11.81|150.0|15|3|anti-sense MSMS UPN47_class_I_Rep_3 4 479.28997802734375 2 479.302593 956.590633 NaN NaN NaN NaN NaN NaN NaN 54.765 1 57.951 57.451 58.451 3.1856 0 0 0 0.35339 1 12462 12462 7.9102 2.6795 1 21249 16481 13145 13154 25508 25508 0.11060101625480456 LEITVCTHSL 10 Unmodified _LEITVCTHSL_ 0 0 0 L1MEf_dup5061|chr7:65933101-65934114:-|1.0552143977510946|0.0094565297034992|6.8|151.0|61|2|anti-sense L1MEf_dup5061|chr7:65933101-65934114:-|1.0552143977510946|0.0094565297034992|6.8|151.0|61|2|anti-sense L1MEf_dup5061|chr7:65933101-65934114:-|1.0552143977510946|0.0094565297034992|6.8|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 558.3063354492188 2 558.291899 1114.56925 NaN NaN NaN NaN NaN NaN NaN 45.793 1 49.551 49.051 50.051 3.7579 0 0 0 0.53105 1 8877 8877 10.074 3.3508 1 21250 13287 13146 13155 25509 25509 0.016543485344527653 LEIYVRNI 8 Unmodified _LEIYVRNI_ 0 0 0 REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron MULTI-MSMS UPN48_class_I_Rep_2 6 510.798828125 2 510.297842 1018.58113 0.36419 0.00018585 -0.67928 -0.00034664 -0.31509 -0.00016079 510.29754362691085 63.128 0.298 66.602 66.45 66.748 3.4738 27 23 2 0 0 0 0.82752 1 14147 14147 4.3292 1.0479 1 87263 + 21251 21407 13147 13156 25510 25510 0.07258333339962064 LEIYVRNI 8 Unmodified _LEIYVRNI_ 0 0 0 REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 510.798828125 2 510.297842 1018.58113 0.36419 0.00018585 -0.67928 -0.00034664 -0.31509 -0.00016079 510.29754362691085 63.128 0.298 66.602 66.45 66.748 3.4738 27 23 2 0 0 0 0.72333 1 14147 14147 4.3292 1.0479 1 87263 + 21252 21407 13147 13156 25511 25511 0.07258333339962064 LEIYVRNI 8 Unmodified _LEIYVRNI_ 0 0 0 REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron MULTI-MATCH UPN47_class_I_Rep_1 2 2 510.297842 1018.58113 0.23402 0.00011942 2.5744 0.0013137 2.8085 0.0014331 510.29779153932145 63.314 0.10719 66.673 66.617 66.725 3.3595 -0.058717 0.0030327 NaN 4.3292 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 39382 + 21253 21407 13147 13156 0.07258333339962064 LEIYVRNI 8 Unmodified _LEIYVRNI_ 0 0 0 REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron REV__ENSG00000266028.7,SRGAP2,chr1,+,I11.1,206393674,206401420|26|5.51|4|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 510.297842 1018.58113 0.10544 5.3803E-05 -0.30457 -0.00015542 -0.19913 -0.00010162 510.2977323751748 63.665 0.46775 66.921 66.566 67.034 3.2556 0.18891 9.4401E-05 NaN 4.3292 49 39 2 NaN NaN NaN NaN 0 NaN NaN 0 61441 + 21254 21407 13147 13156 0.07258333339962064 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 551.3818359375 2 550.879333 1099.74411 0.40306 0.00022204 0.75537 0.00041612 1.1584 0.00063816 550.8794593846496 108.66 0.30484 108.66 108.47 108.77 0 75 34 3 0 0 0 0.48846 1 26560 26560 1.8442 0 1 8621600 + 21255 27707 13148 13157 25512 25512 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 550.88037109375 2 550.879333 1099.74411 0.4024 0.00022168 1.2688 0.00069896 1.6712 0.00092063 550.8798061013742 108.78 0.22219 108.78 108.7 108.92 0 26 18 2 0 0 0 0.48846 1 26623 26623 1.8442 0 1 9698500 + 21256 27707 13148 13157 25513 25513 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 550.8795166015625 2 550.879333 1099.74411 0.40313 0.00022207 0.56991 0.00031395 0.97304 0.00053603 550.87938057852 109 0.58856 109 108.83 109.41 0 79 38 3 0 0 0 0.48846 2 26674 26674;26686 1.8442 0 1 5582900 + 21257 27707 13148 13157 25514;25515 25514 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.8795776367188 2 550.879333 1099.74411 0.53485 0.00029464 0.069345 3.8201E-05 0.6042 0.00033284 551.380772401352 107.93 0.16 111.57 111.47 111.63 3.6355 12 8 2 0 0 0 0.48846 1 26478 26478 1.8442 0 1 4050100 + 21258 27707 13148 13157 25516 25516 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.8795776367188 2 550.879333 1099.74411 0.53472 0.00029457 0.17233 9.4933E-05 0.70705 0.0003895 550.8792775777594 108.28 0.57262 111.92 111.57 112.14 3.6355 174 51 4 0 0 0 0.46869 3 26519 26519;26562;26605 3.9444 0 1 13382000 + 21259 27707 13148 13157 25517;25518;25519 25517 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.8793334960938 2 550.879333 1099.74411 0.62187 0.00034258 -0.27656 -0.00015235 0.34531 0.00019023 550.879079722692 108.08 0.25647 111.62 111.37 111.63 3.5333 57 30 2 0 0 0 0.48846 2 26135 26135;26173 1.8442 0 1 14301000 + 21260 27707 13148 13157 25520;25521 25520 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.8793334960938 2 550.879333 1099.74411 0.62268 0.00034302 0.048908 2.6943E-05 0.67159 0.00036997 550.879195914271 108.23 0.44068 111.76 111.47 111.91 3.5333 101 47 4 0 0 0 0.48846 1 26256 26256 1.8442 0 1 15949000 + 21261 27707 13148 13157 25522 25522 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.8798217773438 2 550.879333 1099.74411 0.49868 0.00027471 0.32909 0.00018129 0.82777 0.000456 550.8793433805018 108.12 0.33668 111.66 111.37 111.7 3.5382 91 38 3 0 0 0 0.48846 2 26369 26369;26407 1.8442 0 1 15369000 + 21262 27707 13148 13157 25523;25524 25523 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.8795776367188 2 550.879333 1099.74411 0.49875 0.00027475 0.36828 0.00020288 0.86702 0.00047762 550.8793859606624 108.24 0.229 111.78 111.65 111.88 3.5382 60 22 4 0 0 0 0.48846 1 26489 26489 1.8442 0 1 17008000 + 21263 27707 13148 13157 25525 25525 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.88037109375 2 550.879333 1099.74411 0.49843 0.00027457 0.86321 0.00047552 1.3616 0.0007501 550.8796734964311 108.52 0.133 112.06 111.95 112.09 3.5382 24 13 2 0 0 0 0.48846 1 26574 26574 1.8442 0 1 5789300 + 21264 27707 13148 13157 25526 25526 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.8795776367188 2 550.879333 1099.74411 0.48357 0.00026639 0.15514 8.5461E-05 0.63871 0.00035185 550.879288596617 108.13 0.47231 111.76 111.46 111.93 3.6313 104 39 4 0 0 0 0.48846 2 26094 26094;26141 1.8442 0 1 9428300 + 21265 27707 13148 13157 25527;25528 25527 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.8795166015625 2 550.879333 1099.74411 0.48185 0.00026544 0.10827 5.9645E-05 0.59012 0.00032508 550.8792966392763 108.22 0.33021 111.85 111.79 112.12 3.6313 30 25 2 0 0 0 0.48846 1 26190 26190 1.8442 0 1 9415200 + 21266 27707 13148 13157 25529 25529 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 551.3232421875 2 550.879333 1099.74411 0.48165 0.00026533 0.20296 0.00011181 0.6846 0.00037713 550.8793240268759 108.69 0.40324 112.32 112.22 112.62 3.6321 53 45 2 0 0 0 0.12462 1 26340 26340 1.8442 1.8442 1 3749600 + 21267 27707 13148 13157 25530 25530 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.879638671875 2 550.879333 1099.74411 0.49136 0.00027068 0.30539 0.00016823 0.79675 0.00043891 550.8793408529442 108.3 0.50912 111.98 111.72 112.23 3.6746 199 59 4 0 0 0 0.46869 3 25687 25598;25640;25687 3.9444 0 1 29364000 + 21268 27707 13148 13157 25531;25532;25533 25533 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.8794555664062 2 550.879333 1099.74411 0.40666 0.00022402 0.23707 0.0001306 0.64373 0.00035462 550.8793226322123 107.91 0.20279 111.59 111.45 111.66 3.6813 47 20 3 0 0 0 0.48846 1 25501 25501 1.8442 0 1 10787000 + 21269 27707 13148 13157 25534 25534 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.8792114257812 2 550.879333 1099.74411 0.4063 0.00022382 0.41646 0.00022942 0.82277 0.00045325 550.8794030325222 108.24 0.38388 111.92 111.76 112.15 3.6813 117 37 4 0 0 0 0.48846 3 25543 25543;25587;25635 1.8442 0 1 36591000 + 21270 27707 13148 13157 25535;25536;25537 25535 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.8799438476562 2 550.879333 1099.74411 0.40752 0.0002245 0.61346 0.00033794 1.021 0.00056244 550.8795626770265 108.6 0.57058 112.27 112.18 112.75 3.6751 103 63 3 0 0 0 0.48846 2 25719 25719;25733 1.8442 0 1 15836000 + 21271 27707 13148 13157 25538;25539 25538 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 550.879333 1099.74411 0.62251 0.00034293 -1.2351 -0.00068039 -0.61259 -0.00033746 551.3796969153618 107.71 0.067558 111.25 111.22 111.28 3.5345 -0.23178 -0.0016147 NaN 1.8442 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 847590 + 21272 27707 13148 13157 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 550.879333 1099.74411 0.49882 0.00027479 0.37662 0.00020747 0.87544 0.00048226 550.8793847534625 108.36 0.17408 111.9 111.87 112.05 3.5382 0.08404 0.00015844 NaN 3.9444 39 17 4 NaN NaN NaN NaN 0 NaN NaN 0 11652000 + 21273 27707 13148 13157 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 550.879333 1099.74411 0.49135 0.00027067 0.018695 1.0299E-05 0.51004 0.00028097 550.8791530657741 108.02 0.11688 111.69 111.59 111.71 3.6746 -0.056633 -0.00013478 NaN 3.9444 35 10 4 NaN NaN NaN NaN 0 NaN NaN 0 13719000 + 21274 27707 13148 13157 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 550.879333 1099.74411 0.49101 0.00027049 -0.031063 -1.7112E-05 0.45994 0.00025337 550.8792265840082 107.87 0.18549 111.55 111.41 111.59 3.6783 0.073956 -0.00028813 NaN 1.8442 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 6549500 + 21275 27707 13148 13157 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 550.879333 1099.74411 0.49108 0.00027053 0.1756 9.6733E-05 0.66668 0.00036726 550.879298071421 108.74 0.52903 112.41 112.23 112.76 3.6746 0.23347 -0.0002062 NaN 1.8442 81 52 2 NaN NaN NaN NaN 0 NaN NaN 0 5919000 + 21276 27707 13148 13157 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 550.879333 1099.74411 0.40652 0.00022395 0.19907 0.00010967 0.6056 0.00033361 550.8793236610252 108.06 0.080879 111.74 111.67 111.75 3.6813 -0.008077 6.3956E-05 NaN 3.9444 24 7 4 NaN NaN NaN NaN 0 NaN NaN 0 16619000 + 21277 27707 13148 13157 0.19823136461786817 LEKAKKKKK 9 Unmodified _LEKAKKKKK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 550.879333 1099.74411 0.40797 0.00022474 0.25387 0.00013985 0.66184 0.00036459 550.8796730509454 107.69 0.049088 111.37 111.33 111.38 3.6813 -0.11215 2.5798E-05 NaN 1.8442 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1519700 + 21278 27707 13148 13157 0.19823136461786817 LEKFFRRVMK 10 Unmodified _LEKFFRRVMK_ 0 0 0 REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|49|1|sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|49|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 451.9329528808594 3 451.932309 1352.7751 0.19031 8.6008E-05 0.79724 0.0003603 0.98755 0.0004463 451.93266308084037 95.139 0.1843 95.139 95.003 95.187 0 36 21 3 0 0 0 0.56454 1 23101 23101 0.62683 0 1 317380 + 21279 30420 13149 13158 25540 25540 0.112819665043844 LEKFKYRRV 9 Unmodified _LEKFKYRRV_ 0 0 0 REV__HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|10|2|sense REV__HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 619.8700561523438 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.713 1 91.35 90.85 91.85 3.6372 0 0 0 0.39598 1 21922 21922 1.6526 0.58116 1 + 21280 23364 13150 13159 25541 25541 0.1201706431365892 LEKFLTGK 8 Unmodified _LEKFLTGK_ 0 0 0 ENSG00000173597|ENST00000310613|SULT1B1 ENSG00000173597|ENST00000310613|SULT1B1 ENSG00000173597|ENST00000310613|SULT1B1 MULTI-MSMS UPN47_class_I_Rep_1 2 468.2815856933594 2 468.28166 934.548768 -0.31361 -0.00014686 -0.11131 -5.2126E-05 -0.42492 -0.00019898 468.281494283906 38.84 0.94501 42.505 42.132 43.077 3.6652 136 61 3 0 0 0 0.82752 1 7643 7643 9.3831 0 1 439950 21281 4639 13151 13160 25542 25542 0.07887545936955576 LEKHLQYFQ 9 Unmodified _LEKHLQYFQ_ 0 0 0 REV__L1P4_dup3178|chr15:42860959-42862606:+|1.0979109594689225|0.0157315094795694|6.12|151.0|12|1|sense REV__L1P4_dup3178|chr15:42860959-42862606:+|1.0979109594689225|0.0157315094795694|6.12|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 603.31982421875 2 603.319306 1204.62406 NaN NaN NaN NaN NaN NaN NaN 94.027 1 94.027 93.527 94.527 0 0 0 0 0.4007 1 22805 22805 0.52476 0 1 + 21282 28912 13152 13161 25543 25543 0.029931033973753074 LEKIALPP 8 Unmodified _LEKIALPP_ 0 0 0 REV__MER51-int_dup117|chr4:70915674-70916574:-|1.1204540976366903|0.006289957131518|7.48|151.0|29|3|sense REV__MER51-int_dup117|chr4:70915674-70916574:-|1.1204540976366903|0.006289957131518|7.48|151.0|29|3|sense MSMS UPN48_class_I_Rep_1 5 440.780517578125 2 440.778754 879.542954 NaN NaN NaN NaN NaN NaN NaN 52.267 1 55.79 55.29 56.29 3.5227 0 0 0 0.40738 1 10855 10855 0.79363 0 1 + 21283 31383 13153 13162 25544 25544 0.09836447425288952 LEKIFFPLWSL 11 Unmodified _LEKIFFPLWSL_ 0 0 0 REV__ENSG00000168830|ENST00000305344|HTR1E REV__ENSG00000168830|ENST00000305344|HTR1E MSMS UPN46_class_I_Rep_3 1 464.93341064453125 3 464.935713 1391.78531 NaN NaN NaN NaN NaN NaN NaN 45.205 1 45.205 44.705 45.705 0 0 0 0 0.38417 1 9170 9170 1.9275 0.81775 1 + 21284 20286 13154 13163 25545 25545 0.10508852710609062 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3798217773438 2 564.379166 1126.74378 0.50428 0.00028461 0.2663 0.00015029 0.77058 0.0004349 564.3790986621093 108.14 0.49532 111.68 111.37 111.86 3.5382 104 53 3 0 0 0 0.42249 1 26339 26339 6.7232 0 1 11354000 + 21285 27635 13155 13164 25546 25546 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.3792114257812 2 564.379166 1126.74378 0.42918 0.00024222 -0.082931 -4.6804E-05 0.34625 0.00019541 564.3789495043989 108.12 0.36736 111.75 111.47 111.84 3.6313 81 31 3 0 0 0 0.42249 1 26137 26137 6.7232 0 1 5296500 + 21286 27635 13155 13164 25547 25547 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 564.3793334960938 2 564.379166 1126.74378 NaN NaN NaN NaN NaN NaN NaN 108.27 1 111.9 111.4 112.4 3.6313 0 0 0 0.37476 1 26186 26186 6.7232 0 1 + 21287 27635 13155 13164 25548 25548 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 564.3800048828125 2 564.379166 1126.74378 0.49073 0.00027696 -0.0019441 -1.0972E-06 0.48879 0.00027586 564.3789845473021 107.8 0.14239 111.48 111.45 111.59 3.6783 32 13 3 0 0 0 0.42249 1 25513 25513 6.7232 0 1 10177000 + 21288 27635 13155 13164 25549 25549 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 564.379150390625 2 564.379166 1126.74378 0.49073 0.00027696 0.022411 1.2648E-05 0.51314 0.00028961 564.3789962835048 108.03 0.11688 111.7 111.59 111.71 3.6746 36 10 4 0 0 0 0.42249 1 25552 25552 6.7232 0 1 10627000 + 21289 27635 13155 13164 25550 25550 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 564.3792114257812 2 564.379166 1126.74378 NaN NaN NaN NaN NaN NaN NaN 109.51 1 113.18 112.68 113.68 3.6715 0 0 0 0.37476 1 26074 26074 6.7232 0 1 + 21290 27635 13155 13164 25551 25551 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 564.379166 1126.74378 0.42918 0.00024222 -0.082931 -4.6804E-05 0.34625 0.00019541 564.3789495043989 108.12 0.36736 111.75 111.47 111.84 3.6313 0.058426 -0.00020369 NaN 6.7232 81 31 3 NaN NaN NaN NaN 0 NaN NaN 0 5296500 + 21291 27635 13155 13164 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 564.379166 1126.74378 0.49073 0.00027696 -0.0019441 -1.0972E-06 0.48879 0.00027586 564.3789845473021 107.8 0.14239 111.48 111.45 111.59 3.6783 -0.074016 0.00023898 NaN 6.7232 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 10177000 + 21292 27635 13155 13164 0.18547716741932163 LEKIKQIKK 9 Unmodified _LEKIKQIKK_ 0 0 0 REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense REV__L1ME1_dup16498|chr9:79634489-79635777:-|1.0628868882723146|0.0118869271246284|6.48|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 564.379166 1126.74378 0.49073 0.00027696 0.022411 1.2648E-05 0.51314 0.00028961 564.3789962835048 108.03 0.11688 111.7 111.59 111.71 3.6746 0.0099169 -8.478E-05 NaN 6.7232 36 10 4 NaN NaN NaN NaN 0 NaN NaN 0 10627000 + 21293 27635 13155 13164 0.18547716741932163 LEKKKSSSIAS 11 Unmodified _LEKKKSSSIAS_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3416137695312 2 589.342978 1176.6714 0.54449 0.00032089 -0.24444 -0.00014406 0.30005 0.00017683 589.3426910657081 87.273 0.49615 87.273 87.216 87.712 0 68 43 3 0 0 0 0.67519 1 20946 20946 0.96228 0.43751 1 650690 + 21294 20925 13156 13165 25552 25552 0.09013337877718186 LEKKKSSSIAS 11 Unmodified _LEKKKSSSIAS_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS UPN47_class_I_Rep_2 3 589.34326171875 2 589.342978 1176.6714 0.53424 0.00031485 0.032726 1.9287E-05 0.56696 0.00033414 589.3429173038619 83.465 1.1732 86.877 86.276 87.449 3.4116 234 145 2 0 0 0 0.66277 1 20822 20822 2.086 2.086 1 166700 + 21295 20925 13156 13165 25553 25553 0.09013337877718186 LEKKKSSSIAS 11 Unmodified _LEKKKSSSIAS_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS UPN47_class_I_Rep_3 4 589.3430786132812 2 589.342978 1176.6714 0.48126 0.00028363 0.081166 4.7835E-05 0.56243 0.00033146 589.3429478701224 83.59 1.1117 86.94 86.372 87.484 3.35 241 131 2 0 0 0 0.67398 2 21021 21021;21084 1.0715 1.0715 1 146560 + 21296 20925 13156 13165 25554;25555 25554 0.09013337877718186 LEKKNSLLI 9 Unmodified _LEKKNSLLI_ 0 0 0 REV__L1ME1_dup11180|chr6:17673365-17674331:+|1.197781481747733|0.0417579113067337|4.84|151.0|8|1|sense REV__L1ME1_dup11180|chr6:17673365-17674331:+|1.197781481747733|0.0417579113067337|4.84|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 529.33447265625 2 529.334424 1056.6543 0.33949 0.0001797 0.0082745 4.38E-06 0.34776 0.00018408 529.3343299640475 53.337 0.73652 56.921 56.519 57.256 3.5836 93 51 2 0 0 0 0.31407 1 11131 11131 13.042 0 1 292910 + 21297 27574 13157 13166 25556 25556 0.12823462062578983 LEKKRQAA 8 Unmodified _LEKKRQAA_ 0 0 0 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 ENSG00000184345|ENST00000333127|IQCF2 MULTI-MSMS UPN47_class_I_Rep_2 3 472.2878112792969 2 472.287808 942.561064 0.20441 9.654E-05 -0.05093 -2.4053E-05 0.15348 7.2486E-05 472.28772845661115 86.28 1.1071 89.713 89.293 90.4 3.4329 483 151 5 0 0 0 0.82752 1 21498 21498 7.9102 0 1 6101700 21298 5048 13158 13167 25557 25557 0.0874858239999412 LEKLGFVVGR 10 Unmodified _LEKLGFVVGR_ 0 0 0 nc|ENSG00000135297|Q9Y2Z2-3|MTO1;ENST00000370308.8_1_6:74171496-74189568:+|nuORF;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1 nc|ENSG00000135297|Q9Y2Z2-3|MTO1 nc|ENSG00000135297|Q9Y2Z2-3|MTO1 MSMS UPN46_class_I_Rep_3 1 559.3409423828125 2 559.340041 1116.66553 NaN NaN NaN NaN NaN NaN NaN 76.39 1 76.39 75.89 76.89 0 0 0 0 0.53105 1 17817 17817 1.4819 0 1 21299 2894 13159 13168 25558 25558 0.11186284156724469 LEKLLLEL 8 Unmodified _LEKLLLEL_ 0 0 0 ENST00000466462.5_1_10:92635852-92660362:+|nuORF ENST00000466462.5_1_10:92635852-92660362:+|nuORF ENST00000466462.5_1_10:92635852-92660362:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8118896484375 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 71.731 1 75.021 74.521 75.521 3.2899 0 0 0 0.40501 1 17549 17549 3.9444 0 1 21300 6900 13160 13169 25559 25559 0.12501272285282994 LEKLMVQMK 9 Unmodified _LEKLMVQMK_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS UPN48_class_I_Rep_3 7 560.31689453125 2 560.316863 1118.61917 0.33337 0.00018679 0.34994 0.00019608 0.68331 0.00038287 560.316986760217 41.218 0.94987 44.864 44.502 45.452 3.6458 212 97 3 0 0 0 0.42249 1 7477 7477 6.7232 0 1 483150 21301 2943 13161 13170 25560 25560 0.06460759938750016 LEKLNGTV 8 Unmodified _LEKLNGTV_ 0 0 0 ENST00000245865.10_2_17:61781645-61782047:-|nuORF;nc|ENSG00000266173|Q7RTN6-2|STRADA;nc|ENSG00000266173|Q7RTN6-4|STRADA;nc|ENSG00000266173|Q7RTN6-6|STRADA;nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA ENST00000245865.10_2_17:61781645-61782047:-|nuORF ENST00000245865.10_2_17:61781645-61782047:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.25775146484375 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 89.899 1 93.524 93.024 94.024 3.6255 0 0 0 0.40643 1 21603 21603 2.0598 0 1 21302 5908 13162 13171 25561 25561 0.055383825232070194 LEKLVDILVEV 11 Unmodified _LEKLVDILVEV_ 0 0 0 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS UPN47_class_I_Rep_2 3 635.38525390625 2 635.386854 1268.75915 NaN NaN NaN NaN NaN NaN NaN 107.92 1 111.46 110.96 111.96 3.5345 0 0 0 0.32232 1 26136 26136 10.8 2.0541 1 + 21303 18822 13163 13172 25562 25562 0.1355253874844493 LEKLVRWVAKW 11 Unmodified _LEKLVRWVAKW_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 476.6241760253906 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 104.18 1 107.88 107.38 108.38 3.6991 0 0 0 0.38417 1 24650 24650 2.4348 0.69251 1 + 21304 29348 13164 13173 25563 25563 0.1485416844463998 LEKLVRWVAKW 11 Unmodified _LEKLVRWVAKW_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 476.62274169921875 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 104.28 1 107.98 107.48 108.48 3.6991 0 0 0 0.38417 1 24673 24673 2.4348 0.18206 1 + 21305 29348 13164 13173 25564 25564 0.1485416844463998 LEKLVRWVAKW 11 Unmodified _LEKLVRWVAKW_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 476.6243591308594 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 104.3 1 108 107.5 108.5 3.6991 0 0 0 0.38417 1 24682 24682 2.4348 0.18206 1 + 21306 29348 13164 13173 25565 25565 0.1485416844463998 LEKLVRWVAKW 11 Unmodified _LEKLVRWVAKW_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 476.6236572265625 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 104.69 1 108.38 107.88 108.88 3.6901 0 0 0 0.38417 1 24779 24779 4.1166 1.6818 1 + 21307 29348 13164 13173 25566 25566 0.1485416844463998 LEKLVRWVAKW 11 Unmodified _LEKLVRWVAKW_ 0 0 0 REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense REV__L1PA16_dup12599|chr16:81000520-81001352:+|1.5732190041467229|0.2545280918370321|2.63|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 476.62420654296875 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 104.86 1 108.55 108.05 109.05 3.6901 0 0 0 0.38417 1 24816 24816 1.1098 0.48293 1 + 21308 29348 13164 13173 25567 25567 0.1485416844463998 LEKLYWLLG 9 Unmodified _LEKLYWLLG_ 0 0 0 REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9 REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9 MULTI-SECPEP UPN46_class_I_Rep_3 1 567.3301391601562 2 567.831517 1133.64848 0.46432 0.00026366 -1.4647 -0.0008317 -1.0004 -0.00056804 567.8304481598663 89.48 0.030151 89.48 89.459 89.49 0 4 2 2 0 0 0 0.12462 1 21530 21530 1.8442 0 1 57160 + 21309 20864 13165 13174 25568 25568 0.08700363550906332 LEKPKIFTRH 10 Unmodified _LEKPKIFTRH_ 0 0 0 REV__ENSG00000056277|ENST00000370978|ZNF280C REV__ENSG00000056277|ENST00000370978|ZNF280C MSMS UPN48_class_I_Rep_2 6 634.879150390625 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.52 1 110.2 109.7 110.7 3.6834 0 0 0 0.53105 1 25177 25177 1.4819 0 1 + 21310 17702 13166 13175 25569 25569 0.11693046968093768 LEKPLGPSVL 10 Unmodified _LEKPLGPSVL_ 0 0 0 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 ENSG00000164002|ENST00000415550|EXO5 MSMS UPN46_class_I_Rep_3 1 526.822509765625 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 108.76 1 108.76 108.26 109.26 0 0 0 0 0.53105 1 26622 26622 8.7454 0.58988 1 21311 4065 13167 13176 25570 25570 0.10399773171252491 LEKQKLLNNI 10 Unmodified _LEKQKLLNNI_ 0 0 0 REV__L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|12|1|sense REV__L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 606.8696899414062 2 606.869163 1211.72377 0.63475 0.00038521 0.013949 8.4651E-06 0.6487 0.00039368 606.8691454139687 107.89 0.22166 111.42 111.37 111.59 3.5345 56 25 3 0 0 0 0.52562 1 26114 26114 8.7454 0 1 8371600 + 21312 26617 13168 13177 25571 25571 0.12637921011332764 LEKQKQNKPQI 11 Unmodified _LEKQKQNKPQI_ 0 0 0 L1MEj_dup992|chr7:37689093-37690241:-|1.40191185134697|0.0112953811649713|6.96|151.0|19|2|sense L1MEj_dup992|chr7:37689093-37690241:-|1.40191185134697|0.0112953811649713|6.96|151.0|19|2|sense L1MEj_dup992|chr7:37689093-37690241:-|1.40191185134697|0.0112953811649713|6.96|151.0|19|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 451.9326477050781 3 451.933143 1352.7776 0.19008 8.5902E-05 -1.0655 -0.00048154 -0.87543 -0.00039563 451.93260818767976 95.663 0.21358 95.663 95.603 95.817 0 35 22 2 0 0 0 0.64331 1 23237 23237 3.8459 1.5932 1 543210 21313 13466 13169 13178 25572 25572 0.11532093443042868 LEKQLKEVF 9 Unmodified _LEKQLKEVF_ 0 0 0 nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF;ENSG00000187398|ENST00000336930|LUZP2 nc|ENSG00000187398|Q86TE4-3|LUZP2 nc|ENSG00000187398|Q86TE4-3|LUZP2 MSMS UPN46_class_I_Rep_3 1 567.3296508789062 2 567.331882 1132.64921 NaN NaN NaN NaN NaN NaN NaN 90.314 1 90.314 89.814 90.814 0 0 0 0 0.3967 1 21775 21775 1.4819 0 1 21314 5189 13170 13179 25573 25573 0.0881915819995811 LEKQLKEVF 9 Unmodified _LEKQLKEVF_ 0 0 0 nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF;ENSG00000187398|ENST00000336930|LUZP2 nc|ENSG00000187398|Q86TE4-3|LUZP2 nc|ENSG00000187398|Q86TE4-3|LUZP2 MULTI-SECPEP UPN46_class_I_Rep_3 1 567.8325805664062 2 567.331882 1132.64921 0.46369 0.00026307 -0.94258 -0.00053475 -0.47889 -0.00027169 567.3312189589891 86.689 0.24264 86.689 86.523 86.765 0 59 25 4 0 0 0 0.12207 1 20693 20693 5.7319 0 1 2297300 21315 5189 13170 13179 25574 25574 0.0881915819995811 LEKQRLEQQLL 11 Unmodified _LEKQRLEQQLL_ 0 0 0 ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;HDAC5|p.T257Qfs*7|1|0.12|ENSG00000108840|chr17:44092679-44092679|T/-|frameshift_variant;nc|ENSG00000108840|Q9UQL6-2|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 ENSG00000108840|ENST00000682912|HDAC5 MSMS UPN48_class_I_Rep_2 6 466.6082458496094 3 466.608548 1396.80381 NaN NaN NaN NaN NaN NaN NaN 90.943 1 94.699 94.199 95.199 3.7554 0 0 0 0.38417 1 21653 21653 1.2148 0.4383 1 21316 1881 13171 13180 25575 25575 0.12128362614521393 LEKQRQIN 8 Unmodified _LEKQRQIN_ 0 0 0 REV__L1MB2_dup7367|chr16:75034175-75034638:-|2.2561462172740057|0.0018564744666958|10.25|151.0|6|2|sense REV__L1MB2_dup7367|chr16:75034175-75034638:-|2.2561462172740057|0.0018564744666958|10.25|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.7962036132812 2 514.795998 1027.57744 -0.23856 -0.00012281 0.54703 0.00028161 0.30847 0.0001588 514.7961798934068 15.903 0.29414 19.4 19.281 19.575 3.4968 57 36 2 0 0 0 0.82752 1 919 919 0.69038 0 1 33753 + 21317 25765 13172 13181 25576 25576 0.0647566356610696 LEKQVRGITN 10 Unmodified _LEKQVRGITN_ 0 0 0 L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|4|1|sense L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|4|1|sense L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 579.351806640625 2 579.335487 1156.65642 NaN NaN NaN NaN NaN NaN NaN 107.36 1 111.03 110.53 111.53 3.6724 0 0 0 0.53105 1 26305 26305 8.1555 1.9497 1 21318 14878 13173 13182 25577 25577 0.08435890800387824 LEKRDVAT 8 Unmodified _LEKRDVAT_ 0 0 0 REV__ENST00000530217.2_2_16:16481295-16481596:+|nuORF REV__ENST00000530217.2_2_16:16481295-16481596:+|nuORF MSMS UPN48_class_I_Rep_1 5 466.2773132324219 2 466.263999 930.513445 NaN NaN NaN NaN NaN NaN NaN 107.86 1 111.5 111 112 3.6313 0 0 0 0.39996 1 26030 26030 7.9102 0.62092 1 + 21319 22836 13174 13183 25578 25578 0.04540883409140406 LEKREARAF 9 Unmodified _LEKREARAF_ 0 0 0 REV__L1MD1_dup3259|chr8:60594946-60595294:+|1.2005848787765985|0.036414624277148|5.04|151.0|5|2|sense REV__L1MD1_dup3259|chr8:60594946-60595294:+|1.2005848787765985|0.036414624277148|5.04|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.3170776367188 2 560.317097 1118.61964 0.47298 0.00026502 -0.16036 -8.9855E-05 0.31262 0.00017517 560.3169619615554 41.493 0.82676 44.999 44.663 45.49 3.506 158 75 3 0 0 0 0.43153 1 7619 7619 6.2058 0 1 489510 + 21320 27323 13175 13184 25579 25579 0.06507638974449037 LEKRNGWW 8 Unmodified _LEKRNGWW_ 0 0 0 REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF MSMS UPN48_class_I_Rep_3 7 544.7839965820312 2 544.785433 1087.55631 NaN NaN NaN NaN NaN NaN NaN 28.622 1 32.365 31.865 32.865 3.7424 0 0 0 0.40604 1 3917 3917 2.5775 0.51773 1 + 21321 19998 13176 13185 25580 25580 0.016036982572359193 LEKRVRGG 8 Unmodified _LEKRVRGG_ 0 0 0 REV__MLT1H_dup7149|chr12:104507624-104507991:-|2.731782326793075|0.003915834390043|9.45|151.0|6|2|sense REV__MLT1H_dup7149|chr12:104507624-104507991:-|2.731782326793075|0.003915834390043|9.45|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.7803039550781 2 457.780151 913.545748 -0.12805 -5.8616E-05 0.2677 0.00012255 0.13966 6.3933E-05 457.78024555194435 81.465 0.79707 84.788 84.551 85.348 3.3231 129 86 2 0 0 0 0.82752 1 20397 20397 2.3027 0 1 150530 + 21322 31747 13177 13186 25581 25581 0.08551715602823151 LEKRVTKN 8 Unmodified _LEKRVTKN_ 0 0 0 REV__nc|ENSG00000143147|Q8N6U8-3|GPR161 REV__nc|ENSG00000143147|Q8N6U8-3|GPR161 MULTI-MSMS UPN48_class_I_Rep_2 6 494.3009948730469 2 494.300916 986.587279 0.27388 0.00013538 0.20046 9.9087E-05 0.47434 0.00023446 494.3010680945897 88.004 1.1303 91.732 91.413 92.543 3.7279 530 144 5 0 0 0 0.82752 1 21058 21058 6.7232 0 1 13562000 + 21323 19426 13178 13187 25582 25582 0.09344851571484014 LEKSIDQYY 9 Unmodified _LEKSIDQYY_ 0 0 0 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-MSMS UPN47_class_I_Rep_3 4 579.7886352539062 2 579.787504 1157.56045 0.1481 8.5866E-05 -0.19338 -0.00011212 -0.045286 -2.6256E-05 579.7873816484797 43.63 0.63851 46.872 46.503 47.141 3.2419 65 38 2 0 0 0 0.31407 1 9104 9104 13.042 0 1 83843 21324 5753 13179 13188 25583 25583 -0.012023018303807476 LEKSNTKF 8 Unmodified _LEKSNTKF_ 0 0 0 L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|4|1|sense L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|4|1|sense L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 483.7667236328125 2 483.766374 965.518196 NaN NaN NaN NaN NaN NaN NaN 55.881 1 55.881 55.381 56.381 0 0 0 0 0.3903 1 12163 12163 11.64 0.81637 1 21325 13431 13180 13189 25584 25584 0.03405767551907957 LEKVKLRI 8 Unmodified _LEKVKLRI_ 0 0 0 REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 499.82684326171875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.312 1 19.835 19.335 20.335 3.5224 0 0 0 0.40625 1 1023 1023 2.3027 0 1 + 21326 24353 13181 13190 25585 25585 0.16587489507651298 LEKVKLRI 8 Unmodified _LEKVKLRI_ 0 0 0 REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 499.82684326171875 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.438 1 19.961 19.461 20.461 3.5224 0 0 0 0.40625 1 1053 1053 2.3027 0 1 + 21327 24353 13181 13190 25586 25586 0.16587489507651298 LEKVKLRI 8 Unmodified _LEKVKLRI_ 0 0 0 REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 499.8266906738281 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.776 1 20.162 19.662 20.662 3.3864 0 0 0 0.40625 1 1131 1131 2.3027 0 1 + 21328 24353 13181 13190 25587 25587 0.16587489507651298 LEKVKLRI 8 Unmodified _LEKVKLRI_ 0 0 0 REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 499.8269348144531 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.996 1 20.354 19.854 20.854 3.3581 0 0 0 0.40625 1 1164 1164 2.3027 0 1 + 21329 24353 13181 13190 25588 25588 0.16587489507651298 LEKVKRLL 8 Unmodified _LEKVKRLL_ 0 0 0 REV__ENST00000484160.1_1_9:130505126-130506959:-|nuORF REV__ENST00000484160.1_1_9:130505126-130506959:-|nuORF MSMS UPN47_class_I_Rep_1 2 499.8269348144531 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.067 1 19.564 19.064 20.064 3.4968 0 0 0 0.40404 1 967 967 5.2307 0 1 + 21330 18049 13182 13191 25589 25589 0.16587489507674036 LEKVKRLL 8 Unmodified _LEKVKRLL_ 0 0 0 REV__ENST00000484160.1_1_9:130505126-130506959:-|nuORF REV__ENST00000484160.1_1_9:130505126-130506959:-|nuORF MSMS UPN47_class_I_Rep_2 3 499.8269958496094 2 499.839677 997.664801 NaN NaN NaN NaN NaN NaN NaN 16.151 1 19.537 19.037 20.037 3.3864 0 0 0 0.40404 1 984 984 5.2307 0 1 + 21331 18049 13182 13191 25590 25590 0.16587489507674036 LEKVPKVGR 9 Unmodified _LEKVPKVGR_ 0 0 0 ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B MSMS UPN46_class_I_Rep_3 1 513.3273315429688 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 92.456 1 92.456 91.956 92.956 0 0 0 0 0.39598 1 22376 22376 1.6526 0.96225 1 21332 855 13183 13192 25591 25591 0.12798014985241934 LEKVRRYR 8 Unmodified _LEKVRRYR_ 0 0 0 REV__nc|ENSG00000112319|O95677-5|EYA4 REV__nc|ENSG00000112319|O95677-5|EYA4 MSMS UPN46_class_I_Rep_3 1 560.3405151367188 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 98.412 1 98.412 97.912 98.912 0 0 0 0 0.40625 1 23959 23959 2.3027 0 1 + 21333 18481 13184 13193 25592 25592 0.11267337965318802 LEKVRRYR 8 Unmodified _LEKVRRYR_ 0 0 0 REV__nc|ENSG00000112319|O95677-5|EYA4 REV__nc|ENSG00000112319|O95677-5|EYA4 MSMS UPN48_class_I_Rep_3 7 560.6378173828125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 106.17 1 109.87 109.37 110.37 3.7003 0 0 0 0.40625 1 25043 25043 2.3027 0 1 + 21334 18481 13184 13193 25593 25593 0.11267337965318802 LEKVVPLKR 9 Unmodified _LEKVVPLKR_ 0 0 0 ENSG00000163331|ENST00000309950|DAPL1 ENSG00000163331|ENST00000309950|DAPL1 ENSG00000163331|ENST00000309950|DAPL1 MSMS UPN46_class_I_Rep_3 1 541.3032836914062 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 28.262 1 28.262 27.762 28.762 0 0 0 0 0.39598 1 4314 4314 1.6526 0.17072 1 21335 3995 13185 13194 25594 25594 0.16479161053416647 LEKVVPLKR 9 Unmodified _LEKVVPLKR_ 0 0 0 ENSG00000163331|ENST00000309950|DAPL1 ENSG00000163331|ENST00000309950|DAPL1 ENSG00000163331|ENST00000309950|DAPL1 MSMS UPN47_class_I_Rep_2 3 541.762939453125 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 114.62 1 118.12 117.62 118.62 3.5039 0 0 0 0.39598 1 27915 27915 1.6526 0.17072 1 21336 3995 13185 13194 25595 25595 0.16479161053416647 LEKVVSRK 8 Unmodified _LEKVVSRK_ 0 0 0 ENST00000502408.1_1_5:76326323-76330256:+|nuORF;ENST00000312916.11_1_5:76326323-76326545:+|nuORF ENST00000502408.1_1_5:76326323-76330256:+|nuORF ENST00000502408.1_1_5:76326323-76330256:+|nuORF MSMS UPN47_class_I_Rep_1 2 479.8062744140625 2 479.805834 957.597115 NaN NaN NaN NaN NaN NaN NaN 24.718 1 28.467 27.967 28.967 3.7495 0 0 0 0.40753 1 3278 3278 0.6015 0 1 21337 6114 13186 13195 25596 25596 0.11662039576856387 LEKWPKLI 8 Unmodified _LEKWPKLI_ 0 0 0 REV__ENST00000584086.5_1_17:26902477-26903857:-|nuORF REV__ENST00000584086.5_1_17:26902477-26903857:-|nuORF MSMS UPN48_class_I_Rep_3 7 513.8185424804688 2 513.820953 1025.62735 NaN NaN NaN NaN NaN NaN NaN 57.767 1 61.298 60.798 61.798 3.5317 0 0 0 0.39819 1 12457 12457 8.5933 0.68312 1 + 21338 22113 13187 13196 25597 25597 0.11556398242055366 LEKYIRFILRK 11 Unmodified _LEKYIRFILRK_ 0 0 0 REV__L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|36|2|sense REV__L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|36|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.6471252441406 3 493.645045 1477.9133 0.27754 0.00013701 1.1774 0.0005812 1.4549 0.0007182 493.9796974871567 44.618 0.084724 44.618 44.556 44.641 0 16 10 3 0 0 0 0.68132 1 9001 9001 0.40827 0.31342 1 209020 + 21339 25328 13188 13197 25598 25598 0.19346413024504727 LEKYNRSL 8 Unmodified _LEKYNRSL_ 0 0 0 REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|21|1|sense REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.26910400390625 2 511.785099 1021.55564 0.22349 0.00011438 -2.043 -0.0010456 -1.8195 -0.00093117 512.2830210448595 48.173 0.10011 51.909 51.853 51.954 3.7361 6 5 2 0 0 0 0.82752 1 9591 9591 13.906 0 1 91566 + 21340 30529 13189 13198 25599 25599 0.04572858817527958 LEKYNRSL 8 Unmodified _LEKYNRSL_ 0 0 0 REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|21|1|sense REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|21|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 511.785099 1021.55564 0.2123 0.00010865 4.302 0.0022017 4.5143 0.0023103 511.7872666816764 48.427 0.06023 52.061 52.023 52.083 3.6339 0.075951 0.00027677 NaN 13.906 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 31106 + 21341 30529 13189 13198 0.04572858817527958 LEKYYASSF 9 Unmodified _LEKYYASSF_ 0 0 0 L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|105|1|anti-sense L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|105|1|anti-sense L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|105|1|anti-sense MSMS UPN48_class_I_Rep_1 5 554.272216796875 2 554.27149 1106.52843 NaN NaN NaN NaN NaN NaN NaN 80.961 1 84.523 84.023 85.023 3.5624 0 0 0 0.3377 1 19297 19297 8.7454 0.83525 1 21342 12008 13190 13199 25600 25600 -0.020576695135332557 LELCRHMVF 9 Unmodified _LELCRHMVF_ 0 0 0 nc|ENSG00000032444|Q8IY17-2|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6;nc|ENSG00000032444|Q8IY17-5|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6 nc|ENSG00000032444|Q8IY17-2|PNPLA6 nc|ENSG00000032444|Q8IY17-2|PNPLA6 MSMS UPN48_class_I_Rep_3 7 574.2918701171875 2 574.291179 1146.56781 NaN NaN NaN NaN NaN NaN NaN 40.362 1 44.013 43.513 44.513 3.6509 0 0 0 0.38784 1 7167 7167 3.5965 0.60125 1 21343 16621 13191 13200 25601 25601 0.00038435964711425186 LELEAHALY 9 Unmodified _LELEAHALY_ 0 0 0 MLT1J2_dup6264|chr19:6811776-6812205:-|1.0267941734194983|0.0041145081615736|7.96|149.0|4|1|sense MLT1J2_dup6264|chr19:6811776-6812205:-|1.0267941734194983|0.0041145081615736|7.96|149.0|4|1|sense MLT1J2_dup6264|chr19:6811776-6812205:-|1.0267941734194983|0.0041145081615736|7.96|149.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 530.296875 2 529.779482 1057.54441 0.29611 0.00015687 -0.30789 -0.00016312 -0.011785 -6.2437E-06 529.7793544388512 57.125 0.86576 60.417 60.1 60.966 3.2912 156 76 3 0 0 0 0.11425 1 13047 13047 12.532 0 1 403870 21344 16473 13192 13201 25602 25602 0.017940367233904908 LELEAPPL 8 Unmodified _LELEAPPL_ 0 0 0 nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1 nc|ENSG00000144045|Q8TE96-2|DQX1 nc|ENSG00000144045|Q8TE96-2|DQX1 MSMS UPN48_class_I_Rep_1 5 441.2538146972656 2 441.252569 880.490584 NaN NaN NaN NaN NaN NaN NaN 56.526 1 60.027 59.527 60.527 3.5014 0 0 0 0.40364 1 12171 12171 5.7604 0 1 21345 3343 13193 13202 25603 25603 0.04555864291671696 LELEHRIL 8 Unmodified _LELEHRIL_ 0 0 0 L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|80|3|sense L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|80|3|sense L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|80|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.8034973144531 2 511.803291 1021.59203 -0.1662 -8.5064E-05 -0.34362 -0.00017586 -0.50982 -0.00026093 511.80304572791067 39.766 0.56945 43.433 43.186 43.756 3.6668 57 41 2 0 0 0 0.82752 1 7795 7795 3.9444 0 1 81340 21346 9523 13194 13203 25604 25604 0.08209735714228827 LELENVCIY 9 Unmodified _LELENVCIY_ 0 0 0 L1MC4a_dup8039|chr14:77564452-77564958:+|1.305016443490887|0.0083168650104992|7.29|151.0|39|3|anti-sense L1MC4a_dup8039|chr14:77564452-77564958:+|1.305016443490887|0.0083168650104992|7.29|151.0|39|3|anti-sense L1MC4a_dup8039|chr14:77564452-77564958:+|1.305016443490887|0.0083168650104992|7.29|151.0|39|3|anti-sense MSMS UPN47_class_I_Rep_1 2 547.7861328125 2 548.273175 1094.5318 NaN NaN NaN NaN NaN NaN NaN 48.6 1 52.281 51.781 52.781 3.6819 0 0 0 0.38299 1 10498 10498 4.756 0.42677 1 21347 11616 13195 13204 25605 25605 -0.011687427311471765 LELFYINI 8 Unmodified _LELFYINI_ 0 0 0 HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|123|3|anti-sense HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|123|3|anti-sense HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_3 4 512.7876586914062 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 65.375 1 68.554 68.054 69.054 3.1795 0 0 0 0.39996 1 15696 15696 7.9102 0 1 21348 8055 13196 13205 25606 25606 0.05324412734125872 LELHQLIFLAI 11 Unmodified _LELHQLIFLAI_ 0 0 0 REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 437.2673645019531 3 437.267463 1308.78056 -0.26388 -0.00011539 0.77403 0.00033846 0.51015 0.00022307 437.26758548950374 52.148 0.25554 55.481 55.39 55.646 3.3332 25 17 2 0 0 0 0.68024 1 11653 11653 0.50596 0.051438 1 127360 + 21349 30990 13197 13206 25607 25607 0.1385196856786024 LELHQLIFLAI 11 Unmodified _LELHQLIFLAI_ 0 0 0 REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 437.267463 1308.78056 -0.26388 -0.00011539 0.77403 0.00033846 0.51015 0.00022307 437.26758548950374 52.148 0.25554 55.481 55.39 55.646 3.3332 0.071917 0.00063044 NaN 0.50596 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 127360 + 21350 30990 13197 13206 0.1385196856786024 LELHQLIFLAI 11 Unmodified _LELHQLIFLAI_ 0 0 0 REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 437.267463 1308.78056 -0.30252 -0.00013228 1.0978 0.00048005 0.79533 0.00034777 437.602458888203 52.139 0.19889 55.345 55.223 55.422 3.2055 -0.06411 0.0010552 NaN 0.50596 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 54623 + 21351 30990 13197 13206 0.1385196856786024 LELHQLIFLAI 11 Unmodified _LELHQLIFLAI_ 0 0 0 REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 437.267463 1308.78056 0.12284 5.3716E-05 -0.35548 -0.00015544 -0.23264 -0.00010173 437.267177733762 51.701 0.13403 55.34 55.269 55.403 3.639 -0.068961 -0.00085126 NaN 0.50596 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 154390 + 21352 30990 13197 13206 0.1385196856786024 LELHQLIFLAI 11 Unmodified _LELHQLIFLAI_ 0 0 0 REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense REV__LTR67B_dup3142|chr15:72503071-72503642:+|2.91717202170134|0.0411894680711991|6.15|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 437.267463 1308.78056 0.014307 6.2558E-06 -0.061148 -2.6738E-05 -0.046841 -2.0482E-05 437.26730569365907 51.872 0.21062 55.47 55.35 55.561 3.5979 0.061154 -0.00046515 NaN 0.50596 32 23 2 NaN NaN NaN NaN 0 NaN NaN 0 183600 + 21353 30990 13197 13206 0.1385196856786024 LELKRATL 8 Unmodified _LELKRATL_ 0 0 0 REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|8|1|sense REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.30072021484375 2 472.300384 942.586216 -0.3274 -0.00015463 0.11839 5.5916E-05 -0.20901 -9.8714E-05 472.3004159656867 32.751 0.64089 36.464 36.279 36.92 3.7131 77 50 2 0 0 0 0.82752 1 5699 5699 6.7232 0 1 75918 + 21354 30129 13198 13207 25608 25608 0.112626372025602 LELKVLKKKKK 11 Unmodified _LELKVLKKKKK_ 0 0 0 L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|26|1|sense L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|26|1|sense L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|26|1|sense MSMS UPN47_class_I_Rep_2 3 452.7574462890625 3 452.32179 1353.94354 NaN NaN NaN NaN NaN NaN NaN 22.699 1 26.143 25.643 26.643 3.4447 0 0 0 0.38417 1 2737 2737 0 0 1 21355 14584 13199 13208 25609 25609 0.28072771689653564 LELLEKVI 8 Unmodified _LELLEKVI_ 0 0 0 REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.8052062988281 2 478.804968 955.595384 0.11025 5.2787E-05 0.035522 1.7008E-05 0.14577 6.9795E-05 478.8048117056256 64.18 0.30063 67.536 67.334 67.635 3.3557 45 24 2 0 0 0 0.82752 1 15209 15209 11.64 0 1 117660 + 21356 18563 13200 13209 25610 25610 0.11580985768239316 LELLKLLPL 9 Unmodified _LELLKLLPL_ 0 0 0 REV__HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|23|1|sense REV__HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|23|1|sense MSMS UPN47_class_I_Rep_1 2 526.3612060546875 2 526.359911 1050.70527 NaN NaN NaN NaN NaN NaN NaN 33.061 1 36.759 36.259 37.259 3.6983 0 0 0 0.40038 1 5773 5773 0.6015 0 1 + 21357 23673 13201 13210 25611 25611 0.18194411107424457 LELLRLRPS 9 Unmodified _LELLRLRPS_ 0 0 0 ENSG00000164591|ENST00000517768|MYOZ3 ENSG00000164591|ENST00000517768|MYOZ3 ENSG00000164591|ENST00000517768|MYOZ3 MULTI-MSMS UPN48_class_I_Rep_2 6 548.8455200195312 2 548.84549 1095.67643 0.48302 0.0002651 0.02222 1.2195E-05 0.50524 0.0002773 548.8454114364489 51.27 1.0705 54.938 54.207 55.277 3.6679 166 71 3 0 0 0 0.42249 1 10544 10544 6.7232 0 1 575530 21358 4118 13202 13211 25612 25612 0.1324168653097786 LELLRLRPS 9 Unmodified _LELLRLRPS_ 0 0 0 ENSG00000164591|ENST00000517768|MYOZ3 ENSG00000164591|ENST00000517768|MYOZ3 ENSG00000164591|ENST00000517768|MYOZ3 MULTI-MSMS UPN48_class_I_Rep_3 7 548.8460083007812 2 548.84549 1095.67643 0.31494 0.00017286 0.13785 7.5659E-05 0.4528 0.00024851 548.8454877369472 51.145 1.0251 54.756 54.254 55.279 3.6105 176 74 3 0 0 0 0.42249 1 10338 10338 6.7232 0 1 496940 21359 4118 13202 13211 25613 25613 0.1324168653097786 LELMVILL 8 Unmodified _LELMVILL_ 0 0 0 ENSG00000179626|ENST00000641569|OR6C4 ENSG00000179626|ENST00000641569|OR6C4 ENSG00000179626|ENST00000641569|OR6C4 MSMS UPN47_class_I_Rep_2 3 472.29986572265625 2 472.298465 942.582376 NaN NaN NaN NaN NaN NaN NaN 33.07 1 36.524 36.024 37.024 3.4547 0 0 0 0.40364 1 5811 5811 5.7604 0 1 21360 4866 13203 13212 25614 25614 0.1087883138449115 LELPNHFTY 9 Unmodified _LELPNHFTY_ 0 0 0 L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|366|3|anti-sense L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|366|3|anti-sense L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|366|3|anti-sense MSMS UPN47_class_I_Rep_3 4 567.2838134765625 2 567.284931 1132.55531 NaN NaN NaN NaN NaN NaN NaN 40.289 1 43.526 43.026 44.026 3.2372 0 0 0 0.39428 1 8054 8054 2.0598 0 1 21361 14627 13204 13213 25615 25615 -0.005665609023253637 LELRHEIL 8 Unmodified _LELRHEIL_ 0 0 0 ENSG00000101638|ENST00000315087|ST8SIA5;nc|ENSG00000101638|O15466-2|ST8SIA5;ENST00000590497.5_1_18:44266209-44301398:-|nuORF;ENST00000588155.1_1_18:44272124-44336471:-|nuORF ENSG00000101638|ENST00000315087|ST8SIA5 ENSG00000101638|ENST00000315087|ST8SIA5 MULTI-MSMS UPN47_class_I_Rep_2 3 511.80322265625 2 511.803291 1021.59203 -0.27669 -0.00014161 -0.051391 -2.6302E-05 -0.32809 -0.00016792 511.8031567422144 40.159 0.59837 43.53 43.298 43.897 3.3712 51 37 2 0 0 0 0.82752 1 8001 8001 3.9444 0 1 61475 21362 1582 13205 13214 25616 25616 0.08209735714228827 LELRKDLGF 9 Unmodified _LELRKDLGF_ 0 0 0 ENST00000409863.5_1_7:24839804-24873723:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3 ENST00000409863.5_1_7:24839804-24873723:-|nuORF ENST00000409863.5_1_7:24839804-24873723:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 546.280517578125 2 545.816399 1089.61824 0.47153 0.00025737 -1.8706 -0.001021 -1.399 -0.00076361 545.81686728234 54.373 0.27172 57.887 57.755 58.027 3.5143 25 17 2 0 0 0 0.12281 1 11541 11541 4.3292 0 1 76631 21363 1080 13206 13215 25617 25617 0.07702004885709357 LELRRFFK 8 Unmodified _LELRRFFK_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MSMS UPN47_class_I_Rep_1 2 554.7780151367188 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 66.838 1 70.199 69.699 70.699 3.3611 0 0 0 0.40746 1 16037 16037 0.69038 0.16561 1 21364 2342 13207 13216 25618 25618 0.10577721222125547 LELSPKSLTQ 10 Unmodified _LELSPKSLTQ_ 0 0 0 MER90a_dup245|chr3:186552266-186552871:+|1.1907219337324204|0.412448877655615|1.53|150.0|5|1|sense MER90a_dup245|chr3:186552266-186552871:+|1.1907219337324204|0.412448877655615|1.53|150.0|5|1|sense MER90a_dup245|chr3:186552266-186552871:+|1.1907219337324204|0.412448877655615|1.53|150.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 558.33154296875 2 558.318971 1114.62339 NaN NaN NaN NaN NaN NaN NaN 53.892 1 57.42 56.92 57.92 3.5278 0 0 0 0.53105 1 12112 12112 1.3295 0 1 21365 16228 13208 13217 25619 25619 0.0706626395767671 LELSTARR 8 Unmodified _LELSTARR_ 0 0 0 REV__ENSG00000272333|ENST00000420124|KMT2B REV__ENSG00000272333|ENST00000420124|KMT2B MSMS UPN46_class_I_Rep_3 1 473.27685546875 2 473.277441 944.540328 NaN NaN NaN NaN NaN NaN NaN 49.99 1 49.99 49.49 50.49 0 0 0 0 0.40625 1 10537 10537 2.3027 0 1 + 21366 21421 13209 13218 25620 25620 0.06583992020330243 LELSVALVL 9 Unmodified _LELSVALVL_ 0 0 0 REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 478.8043518066406 2 478.804968 955.595384 0.058382 2.7954E-05 -0.24709 -0.00011831 -0.18871 -9.0356E-05 478.80485583147856 64.456 0.3656 67.63 67.395 67.761 3.1741 29 25 2 0 0 0 0.33654 2 15391 15391;15404 11.64 0 1 77373 + 21367 23164 13210 13219 25621;25622 25621 0.11580985768216578 LELVAGSGVYI 11 Unmodified _LELVAGSGVYI_ 0 0 0 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 MSMS UPN47_class_I_Rep_3 4 560.8153076171875 2 560.816064 1119.61758 NaN NaN NaN NaN NaN NaN NaN 66.017 1 69.203 68.703 69.703 3.1853 0 0 0 0.38417 1 15894 15894 5.7319 2.1354 1 21368 3508 13211 13220 25623 25623 0.06255165445986677 LELVHTITY 9 Unmodified _LELVHTITY_ 0 0 0 REV__ENST00000433306.1_1_X:25212500-25212860:-|nuORF REV__ENST00000433306.1_1_X:25212500-25212860:-|nuORF MSMS UPN47_class_I_Rep_1 2 544.8031616210938 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 76.201 1 79.604 79.104 80.104 3.4034 0 0 0 0.38639 1 18845 18845 3.9444 0.3479 1 + 21369 22302 13212 13221 25624 25624 0.05106896274514838 LELVHTITY 9 Unmodified _LELVHTITY_ 0 0 0 REV__ENST00000433306.1_1_X:25212500-25212860:-|nuORF REV__ENST00000433306.1_1_X:25212500-25212860:-|nuORF MSMS UPN47_class_I_Rep_2 3 544.802978515625 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 76.388 1 79.709 79.209 80.209 3.3216 0 0 0 0.38639 1 18908 18908 3.9444 0.3479 1 + 21370 22302 13212 13221 25625 25625 0.05106896274514838 LELVLSLGL 9 Unmodified _LELVLSLGL_ 0 0 0 HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|454|3|anti-sense HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|454|3|anti-sense HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|454|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.3068542480469 2 478.804968 955.595384 0.10808 5.1748E-05 0.2934 0.00014048 0.40148 0.00019223 478.8050411741461 64.367 0.21529 67.723 67.635 67.85 3.3557 35 24 2 0 0 0 0.35081 1 15287 15287 10.824 0 1 114520 21371 8116 13213 13222 25626 25626 0.11580985768239316 LELVNFHI 8 Unmodified _LELVNFHI_ 0 0 0 L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|235|3|anti-sense L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|235|3|anti-sense L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|235|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.7792053222656 2 492.779285 983.544017 0.11433 5.634E-05 0.17291 8.5206E-05 0.28724 0.00014155 492.77926097050357 59.146 0.79495 62.311 61.969 62.764 3.1658 74 50 3 0 0 0 0.82752 1 13894 13894 4.3292 0 1 117210 21372 8783 13214 13223 25627 25627 0.051586617941893564 LEMPDLSQF 9 Unmodified _LEMPDLSQF_ 0 0 0 HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|13|1|sense;HERVL-int_dup692|chr4:139443292-139444418:+|1.6170296608019077|0.1400948895408627|3.53|150.0|40|3|sense HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|13|1|sense HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 539.7769165039062 2 540.257525 1078.5005 0.46892 0.00025334 0.0057502 3.1066E-06 0.47467 0.00025644 540.2572206734613 77.747 0.20096 81.369 81.234 81.435 3.6222 22 18 2 0 0 0 0.11873 1 18408 18408 8.5933 0.68312 1 69862 21373 8376 13215 13224 25628 25628 -0.03561315765273321 LEMVMVNY 8 Unmodified _LEMVMVNY_ 0 0 0 REV__ENST00000579316.5_1_17:80213289-80231257:-|nuORF REV__ENST00000579316.5_1_17:80213289-80231257:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 499.7376403808594 2 499.737914 997.461275 0.072872 3.6417E-05 -0.84322 -0.00042139 -0.77035 -0.00038497 499.73745729289124 46.953 0.76966 50.305 49.931 50.7 3.3515 92 55 2 0 0 0 0.82752 1 10098 10098 5.2307 0.47466 1 198780 + 21374 19385 13216 13225 25629 25629 -0.0375573932046791 LENILPSVGF 10 Unmodified _LENILPSVGF_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MSMS UPN47_class_I_Rep_1 2 544.8041381835938 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 89.557 1 93.231 92.731 93.731 3.6738 0 0 0 0.53105 1 22392 22392 2.7352 0.67545 1 21375 4145 13217 13226 25630 25630 0.05106896274514838 LENILPSVGF 10 Unmodified _LENILPSVGF_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MSMS UPN47_class_I_Rep_1 2 544.8250122070312 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 89.59 1 93.264 92.764 93.764 3.6738 0 0 0 0.53105 1 22401 22401 5.2969 0.96765 1 21376 4145 13217 13226 25631 25631 0.05106896274514838 LENKDVNQ 8 Unmodified _LENKDVNQ_ 0 0 0 REV__L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|46|2|sense REV__L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|46|2|sense MSMS UPN47_class_I_Rep_3 4 480.2439270019531 2 480.243264 958.471974 NaN NaN NaN NaN NaN NaN NaN 26.313 1 29.661 29.161 30.161 3.3478 0 0 0 0.40501 1 3830 3830 3.9444 0 1 + 21377 29061 13218 13227 25632 25632 -0.008922973501853448 LENLLYLYLY 10 Unmodified _LENLLYLYLY_ 0 0 0 nc|ENSG00000147485|A1KZ92-2|PXDNL;ENSG00000147485|ENST00000356297|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL MSMS UPN48_class_I_Rep_1 5 439.5748291015625 3 439.576073 1315.70639 NaN NaN NaN NaN NaN NaN NaN 37.793 1 41.298 40.798 41.798 3.5052 0 0 0 0.53105 1 6467 6467 8.4443 0 1 21378 3477 13219 13228 25633 25633 0.061165806856706695 LENLWLVSL 9 Unmodified _LENLWLVSL_ 0 0 0 L1ME3B_dup5885|chr12:76417237-76417990:-|1.4673502274543904|0.016312219409403|6.49|151.0|44|2|anti-sense L1ME3B_dup5885|chr12:76417237-76417990:-|1.4673502274543904|0.016312219409403|6.49|151.0|44|2|anti-sense L1ME3B_dup5885|chr12:76417237-76417990:-|1.4673502274543904|0.016312219409403|6.49|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.8115234375 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 53.649 1 57.259 56.759 57.759 3.6098 0 0 0 0.38639 1 11264 11264 3.9444 0 1 21379 12723 13220 13229 25634 25634 0.07271486654190085 LENPQIFVN 9 Unmodified _LENPQIFVN_ 0 0 0 L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|30|3|sense L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|30|3|sense L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|30|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 536.7984008789062 2 537.284931 1072.55531 0.33759 0.00018138 1.4862 0.00079851 1.8238 0.00097989 537.2857079075271 59.869 0.23982 63.034 62.925 63.165 3.1651 20 15 2 0 0 0 0.050247 1 13988 13988 29.082 8.628 1 60189 21380 11197 13221 13230 25635 25635 0.021934390976639406 LENRKYLL 8 Unmodified _LENRKYLL_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|191|3|anti-sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|191|3|anti-sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|191|3|anti-sense MSMS UPN48_class_I_Rep_3 7 524.8109741210938 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 60.781 1 64.294 63.794 64.794 3.5128 0 0 0 0.40404 1 13378 13378 5.2307 0.47466 1 21381 16158 13222 13231 25636 25636 0.08578022231290561 LENRWKGTLP 10 Unmodified _LENRWKGTLP_ 0 0 0 REV__L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|19|2|sense REV__L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 404.7917785644531 3 405.227779 1212.66151 NaN NaN NaN NaN NaN NaN NaN 88.465 1 91.852 91.352 92.352 3.3873 0 0 0 0.53105 1 22189 22189 1.9064 0.57673 1 + 21382 27719 13223 13232 25637 25637 0.063681946629913 LENVIRDAVTY 11 Unmodified _LENVIRDAVTY_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS UPN46_class_I_Rep_3 1 646.8463745117188 2 646.845884 1291.67722 0.67955 0.00043956 -0.1173 -7.5875E-05 0.56225 0.00036369 646.8457861427593 60.467 0.66844 60.467 60.168 60.837 0 205 79 3 0 0 0 7.7046E-11 5 13414 13346;13381;13414;13448;13479 116.75 78.13 1 1923500 21383 3798 13224 13233 25638;25639;25640;25641;25642 25640 0.043044363893841364 LENWHMTR 8 Unmodified _LENWHMTR_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|138|3|sense MSMS UPN48_class_I_Rep_2 6 544.2434692382812 2 543.761101 1085.50765 NaN NaN NaN NaN NaN NaN NaN 21.068 1 24.716 24.216 25.216 3.648 0 0 0 0.40659 1 1925 1925 1.8442 0.19162 1 21384 15425 13225 13234 25643 25643 -0.03168538374188756 LEPAIREHR 9 Unmodified _LEPAIREHR_ 0 0 0 ENST00000431567.5_1_2:95941253-95943708:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000463580.5_1_2:95940333-95943708:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.8143310546875 2 560.814722 1119.61489 0.43338 0.00024305 1.9017 0.0010665 2.3351 0.0013096 560.8154566310901 65.423 0.20996 68.603 68.423 68.633 3.1795 38 16 3 0 0 0 0.36392 1 15675 15675 10.074 2.465 1 122290 21385 3691 13226 13235 25644 25644 0.05986754831678809 LEPAQKSRVS 10 Unmodified _LEPAQKSRVS_ 0 0 0 nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 nc|ENSG00000110723|Q8NEV8-2|EXPH5 MSMS UPN48_class_I_Rep_1 5 557.8155517578125 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 61.42 1 64.888 64.388 65.388 3.4678 0 0 0 0.53105 1 13662 13662 2.9952 0.26005 1 21386 1951 13227 13236 25645 25645 0.06195915392004281 LEPFFKGLR 9 Unmodified _LEPFFKGLR_ 0 0 0 REV__L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|75|1|anti-sense REV__L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|75|1|anti-sense MSMS UPN47_class_I_Rep_1 2 553.8209838867188 2 553.821484 1105.62842 NaN NaN NaN NaN NaN NaN NaN 31.02 1 34.749 34.249 35.249 3.7293 0 0 0 0.39598 1 5148 5148 1.6526 0 1 + 21387 29443 13228 13237 25646 25646 0.07982612610953765 LEPKVSAEFD 10 Unmodified _LEPKVSAEFD_ 0 0 0 nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000119283|ENST00000366653|TRIM67 nc|ENSG00000119283|Q6ZTA4-2|TRIM67 nc|ENSG00000119283|Q6ZTA4-2|TRIM67 MULTI-MSMS UPN47_class_I_Rep_3 4 567.7880859375 2 567.787504 1133.56045 0.40061 0.00022746 0.066445 3.7726E-05 0.46706 0.00026519 567.7873450991292 56.23 0.77567 59.402 59.055 59.831 3.1721 125 49 4 0 0 0 0.56118 1 13019 13019 2.9952 0.26005 1 349230 21388 2275 13229 13238 25647 25647 -0.000983018303713834 LEPLNRQK 8 Unmodified _LEPLNRQK_ 0 0 0 REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|169|3|sense REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|169|3|sense MSMS UPN48_class_I_Rep_1 5 499.2931823730469 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 88.712 1 92.335 91.835 92.835 3.6229 0 0 0 0.4044 1 21285 21285 4.756 0 1 + 21389 27289 13230 13239 25648 25648 0.07320565054430972 LEPMYLTY 8 Unmodified _LEPMYLTY_ 0 0 0 ENST00000545737.5_1_12:28459732-28460593:+|nuORF ENST00000545737.5_1_12:28459732-28460593:+|nuORF ENST00000545737.5_1_12:28459732-28460593:+|nuORF MSMS UPN48_class_I_Rep_1 5 515.2522583007812 2 515.251711 1028.48887 NaN NaN NaN NaN NaN NaN NaN 64.904 1 68.358 67.858 68.858 3.4541 0 0 0 0.40404 1 14727 14727 5.2307 0 1 21390 7377 13231 13240 25649 25649 -0.024235127885958718 LEPRASPLLYS 11 Unmodified _LEPRASPLLYS_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS UPN47_class_I_Rep_3 4 623.3447875976562 2 623.34552 1244.67649 0.512 0.00031915 -1.3838 -0.00086257 -0.87178 -0.00054342 623.3443790763147 108.55 0.099258 112.09 112.02 112.12 3.5382 20 11 2 0 0 0 0.65559 1 26575 26575 2.7352 0.23671 1 7156600 + 21391 18578 13232 13241 25650 25650 0.06393641740351086 LEPRCPRMVL 10 Unmodified _LEPRCPRMVL_ 0 0 0 nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF nc|ENSG00000110429|Q9UK99-3|FBXO3 nc|ENSG00000110429|Q9UK99-3|FBXO3 MULTI-MSMS UPN47_class_I_Rep_1 2 405.5566101074219 3 405.222983 1212.64712 -0.23889 -9.6804E-05 -1.2155 -0.00049255 -1.4544 -0.00058936 405.2225247333981 47.542 0.17466 51.237 51.19 51.365 3.6951 25 19 2 0 0 0 0.53004 1 10178 10178 4.7159 1.1232 1 182150 21392 1940 13233 13242 25651 25651 0.04930082918849621 LEPRRLRLQCA 11 Unmodified _LEPRRLRLQCA_ 0 0 0 ENST00000588097.5_1_17:42381086-42381365:-|nuORF ENST00000588097.5_1_17:42381086-42381365:-|nuORF ENST00000588097.5_1_17:42381086-42381365:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 452.597412109375 3 452.262717 1353.76632 0.14224 6.4329E-05 0.28457 0.0001287 0.4268 0.00019303 452.2628087425035 58.948 1.3532 62.435 61.475 62.828 3.487 150 83 2 0 0 0 0.68081 1 12745 12745 0.45452 0 1 280000 21393 7597 13234 13243 25652 25652 0.10358992867941197 LEPVKWVL 8 Unmodified _LEPVKWVL_ 0 0 0 AluSx_dup94813|chr16:89380118-89380411:-|1.0454108749426307|0.0218019586425927|5.58|151.0|13|3|sense AluSx_dup94813|chr16:89380118-89380411:-|1.0454108749426307|0.0218019586425927|5.58|151.0|13|3|sense AluSx_dup94813|chr16:89380118-89380411:-|1.0454108749426307|0.0218019586425927|5.58|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 492.3003845214844 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 45.781 1 49.481 48.981 49.981 3.6999 0 0 0 0.40643 1 9649 9649 2.0598 0 1 21394 304 13235 13244 25653 25653 0.09316422833660454 LEPVKWVL 8 Unmodified _LEPVKWVL_ 0 0 0 AluSx_dup94813|chr16:89380118-89380411:-|1.0454108749426307|0.0218019586425927|5.58|151.0|13|3|sense AluSx_dup94813|chr16:89380118-89380411:-|1.0454108749426307|0.0218019586425927|5.58|151.0|13|3|sense AluSx_dup94813|chr16:89380118-89380411:-|1.0454108749426307|0.0218019586425927|5.58|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 492.301025390625 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 46.168 1 49.522 49.022 50.022 3.3534 0 0 0 0.40643 1 9797 9797 2.0598 0 1 21395 304 13235 13244 25654 25654 0.09316422833660454 LEPVRGRS 8 Unmodified _LEPVRGRS_ 0 0 0 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MULTI-MSMS UPN47_class_I_Rep_1 2 457.2643737792969 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.82752 1 17937 17937 5.2307 0 1 270870 + 21396 18775 13236 13245 25655 25655 0.05435722848869773 LEPVRGRS 8 Unmodified _LEPVRGRS_ 0 0 0 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MULTI-MSMS UPN47_class_I_Rep_2 3 457.26416015625 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.82752 1 17996 17996 2.5775 0 1 317760 + 21397 18775 13236 13245 25656 25656 0.05435722848869773 LEPWRTIDG 9 Unmodified _LEPWRTIDG_ 0 0 0 L1MB3_dup3830|chr4:1186603-1187535:+|1.048869413170849|0.4601977589300163|1.19|150.0|5|1|sense L1MB3_dup3830|chr4:1186603-1187535:+|1.048869413170849|0.4601977589300163|1.19|150.0|5|1|sense L1MB3_dup3830|chr4:1186603-1187535:+|1.048869413170849|0.4601977589300163|1.19|150.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 543.8062744140625 2 543.782556 1085.55056 0.22135 0.00012036 -0.22478 -0.00012223 -0.0034311 -1.8658E-06 543.7826610407349 47.985 0.42394 51.667 51.529 51.953 3.6819 25 20 2 0 0 0 0.12321 1 10328 10328 3.9444 0.66309 1 51878 21398 10427 13237 13246 25657 25657 0.01120554954900399 LEQATQFSAF 10 Unmodified _LEQATQFSAF_ 0 0 0 nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3 nc|ENSG00000184343|Q9UPE1-2|SRPK3 nc|ENSG00000184343|Q9UPE1-2|SRPK3 MULTI-MSMS UPN47_class_I_Rep_1 2 571.2802734375 2 571.279846 1140.54514 -0.083817 -4.7883E-05 0.35225 0.00020123 0.26843 0.00015335 571.2800578035378 29.797 0.71298 33.555 33.223 33.936 3.7578 111 51 3 0 0 0 0.48573 1 4822 4822 13.042 1.4022 1 139650 21399 5047 13238 13247 25658 25658 -0.019511686275791362 LEQELIERF 9 Unmodified _LEQELIERF_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MSMS UPN46_class_I_Rep_3 1 588.8150634765625 2 588.816596 1175.61864 NaN NaN NaN NaN NaN NaN NaN 62.364 1 62.364 61.864 62.864 0 0 0 0 0.064159 1 13937 13937 32.898 14.525 1 21400 3685 13239 13248 25659 25659 0.037853798148944406 LEQKGKFL 8 Unmodified _LEQKGKFL_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|145|1|anti-sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|145|1|anti-sense MSMS UPN47_class_I_Rep_2 3 481.78778076171875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 115.49 1 119 118.5 119.5 3.5039 0 0 0 0.40746 1 28158 28158 0.69038 0 1 + 21401 23546 13240 13249 25660 25660 0.07734948311247081 LEQKKQSH 8 Unmodified _LEQKKQSH_ 0 0 0 REV__nc|ENSG00000137948|Q58F21-5|BRDT REV__nc|ENSG00000137948|Q58F21-5|BRDT MSMS UPN47_class_I_Rep_1 2 499.3048095703125 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 49.943 1 53.571 53.071 54.071 3.6285 0 0 0 0.40625 1 10908 10908 2.3027 0 1 + 21402 19255 13241 13250 25661 25661 0.03683688157718734 LEQQLQRL 8 Unmodified _LEQQLQRL_ 0 0 0 REV__ENSG00000076201|ENST00000265562|PTPN23 REV__ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS UPN47_class_I_Rep_3 4 514.2982788085938 2 514.298373 1026.58219 0.11886 6.1128E-05 0.1126 5.7912E-05 0.23146 0.00011904 514.2984082006495 46.289 0.55978 49.533 49.238 49.798 3.2439 42 35 2 0 0 0 0.82752 1 9951 9951 4.3292 0 1 47464 + 21403 17864 13242 13251 25662 25662 0.0699654770885445 LEQSIKYI 8 Unmodified _LEQSIKYI_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|32|1|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|32|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.2845153808594 2 497.2844 992.554247 -0.4165 -0.00020712 0.54523 0.00027113 0.12873 6.4015E-05 497.2846650882357 29.309 0.84001 32.632 32.242 33.082 3.3235 133 71 2 0 0 0 0.82752 1 4652 4652 2.5775 0 1 142510 + 21404 26310 13243 13252 25663 25663 0.057672247287769096 LEQSLQPV 8 Unmodified _LEQSLQPV_ 0 0 0 REV__nc|ENSG00000159140|P18583-8|SON REV__nc|ENSG00000159140|P18583-8|SON MULTI-SECPEP UPN47_class_I_Rep_3 4 456.6998596191406 2 457.2531 912.491647 -0.85319 -0.00039012 0.85992 0.0003932 0.0067362 3.0801E-06 457.2532074079495 26.014 0.47586 29.362 29.099 29.575 3.3478 57 43 2 0 0 0 0.72333 1 3676 3676 0.69038 0 1 44073 + 21405 19860 13244 13253 25664 25664 0.03190078660588824 LEQSLQPV 8 Unmodified _LEQSLQPV_ 0 0 0 REV__nc|ENSG00000159140|P18583-8|SON REV__nc|ENSG00000159140|P18583-8|SON MULTI-MATCH UPN47_class_I_Rep_2 3 2 457.2531 912.491647 -0.47762 -0.00021839 0.64853 0.00029654 0.17091 7.815E-05 457.2531704090039 25.819 0.4222 29.313 29.125 29.547 3.4945 -0.024299 -6.4811E-05 NaN 0.69038 56 40 2 NaN NaN NaN NaN 0 NaN NaN 0 53209 + 21406 19860 13244 13253 0.03190078660588824 LEQSLVAGP 9 Unmodified _LEQSLVAGP_ 0 0 0 REV__ENST00000522674.1_1_7:27228344-27228893:+|nuORF REV__ENST00000522674.1_1_7:27228344-27228893:+|nuORF MSMS UPN47_class_I_Rep_3 4 456.83447265625 2 457.2531 912.491647 NaN NaN NaN NaN NaN NaN NaN 26.28 1 29.628 29.128 30.128 3.3478 0 0 0 0.38299 1 3820 3820 4.756 0 1 + 21407 22793 13245 13254 25665 25665 0.03190078660588824 LEREFQSL 8 Unmodified _LEREFQSL_ 0 0 0 nc|ENSG00000188779|P84550-2|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1;ENSG00000188779|ENST00000380035|SKOR1 nc|ENSG00000188779|P84550-2|SKOR1 nc|ENSG00000188779|P84550-2|SKOR1 MULTI-MSMS UPN48_class_I_Rep_1 5 511.268798828125 2 511.269281 1020.52401 0.22153 0.00011326 0.31921 0.0001632 0.54074 0.00027646 511.26955531535367 48.351 1.045 51.875 51.55 52.595 3.5239 130 71 3 0 0 0 0.82752 1 9622 9622 15.847 0 1 267780 21408 5251 13246 13255 25666 25666 0.0145686606357458 LEREKELI 8 Unmodified _LEREKELI_ 0 0 0 REV__ENSG00000184564|ENST00000647374|SLITRK6 REV__ENSG00000184564|ENST00000647374|SLITRK6 MULTI-MSMS UPN47_class_I_Rep_1 2 515.3016967773438 2 515.300581 1028.58661 0.27854 0.00014353 0.012103 6.2368E-06 0.29064 0.00014977 515.3004297830158 61.542 0.34083 64.91 64.726 65.067 3.3681 41 24 2 0 0 0 0.82752 1 14425 14425 14.838 0 1 103680 + 21409 20822 13247 13256 25667 25667 0.07346012131779389 LEREQRWL 8 Unmodified _LEREQRWL_ 0 0 0 ENSG00000123219|ENST00000396679|CENPK ENSG00000123219|ENST00000396679|CENPK ENSG00000123219|ENST00000396679|CENPK MSMS UPN48_class_I_Rep_1 5 565.309326171875 2 565.309272 1128.60399 NaN NaN NaN NaN NaN NaN NaN 54.141 1 57.656 57.156 58.156 3.5143 0 0 0 0.3903 1 11434 11434 11.64 0 1 21410 2414 13248 13257 25668 25668 0.04483352457418732 LERHQPRSV 9 Unmodified _LERHQPRSV_ 0 0 0 REV__L1ME1_dup19056|chr10:11189536-11189682:-|2.582987087795752|0.0097850579534395|8.04|151.0|2|2|sense REV__L1ME1_dup19056|chr10:11189536-11189682:-|2.582987087795752|0.0097850579534395|8.04|151.0|2|2|sense MSMS UPN48_class_I_Rep_1 5 561.3101196289062 2 561.312346 1120.61014 NaN NaN NaN NaN NaN NaN NaN 37.641 1 41.146 40.646 41.646 3.5052 0 0 0 0.39598 1 6424 6424 1.6526 0.96225 1 + 21411 27647 13249 13258 25669 25669 0.05465870688931318 LERIQEKLV 9 Unmodified _LERIQEKLV_ 0 0 0 REV__TSC22D4|p.E353V|1|0.13|ENSG00000166925|chr7:100467089-100467089|T/A|missense_variant REV__TSC22D4|p.E353V|1|0.13|ENSG00000166925|chr7:100467089-100467089|T/A|missense_variant MSMS UPN47_class_I_Rep_3 4 564.342529296875 2 564.342781 1126.67101 NaN NaN NaN NaN NaN NaN NaN 43.237 1 46.479 45.979 46.979 3.2419 0 0 0 0.3377 1 8952 8952 8.7454 0 1 + 21412 20197 13250 13259 25670 25670 0.11273962948507688 LERKEDEI 8 Unmodified _LERKEDEI_ 0 0 0 REV__ENSG00000155087|ENST00000285402|ODF1 REV__ENSG00000155087|ENST00000285402|ODF1 MULTI-MSMS UPN47_class_I_Rep_1 2 516.2716064453125 2 516.272021 1030.52949 -0.10021 -5.1735E-05 0.47497 0.00024521 0.37476 0.00019348 516.2723022560878 41.971 0.57702 45.651 45.476 46.053 3.6792 60 38 2 0 0 0 0.82752 1 8476 8476 3.9444 0 1 73239 + 21413 19758 13251 13260 25671 25671 0.01544544855391905 LERKEDEI 8 Unmodified _LERKEDEI_ 0 0 0 REV__ENSG00000155087|ENST00000285402|ODF1 REV__ENSG00000155087|ENST00000285402|ODF1 MULTI-MSMS UPN47_class_I_Rep_2 3 516.2716064453125 2 516.272021 1030.52949 -0.27322 -0.00014106 0.61399 0.00031699 0.34077 0.00017593 516.2723675046891 42.388 0.50174 45.75 45.557 46.059 3.3611 49 36 2 0 0 0 0.82752 3 8600 8600;8679;8688 3.9444 0 1 70953 + 21414 19758 13251 13260 25672;25673;25674 25672 0.01544544855391905 LERKEDEI 8 Unmodified _LERKEDEI_ 0 0 0 REV__ENSG00000155087|ENST00000285402|ODF1 REV__ENSG00000155087|ENST00000285402|ODF1 MULTI-MSMS UPN47_class_I_Rep_3 4 516.2713012695312 2 516.272021 1030.52949 -0.06982 -3.6046E-05 0.49929 0.00025777 0.42947 0.00022172 516.2722105105861 42.482 0.5795 45.721 45.491 46.071 3.2394 56 38 2 0 0 0 0.82752 1 8749 8749 3.9444 0 1 67674 + 21415 19758 13251 13260 25675 25675 0.01544544855391905 LERKGKAL 8 Unmodified _LERKGKAL_ 0 0 0 Tigger13a_dup395|chr2:143387965-143388567:+|1.5225386718044214|0.0057163748450388|8.06|151.0|45|3|anti-sense Tigger13a_dup395|chr2:143387965-143388567:+|1.5225386718044214|0.0057163748450388|8.06|151.0|45|3|anti-sense Tigger13a_dup395|chr2:143387965-143388567:+|1.5225386718044214|0.0057163748450388|8.06|151.0|45|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 458.2785339355469 2 457.792727 913.5709 -0.47294 -0.00021651 0.24023 0.00010998 -0.23271 -0.00010653 457.7926176092783 37.435 0.7079 40.834 40.476 41.184 3.3988 65 53 2 0 0 0 0.82752 1 7148 7148 16.942 3.4344 1 61581 21416 33232 13252 13261 25676 25676 0.11065770405377862 LERKVESL 8 Unmodified _LERKVESL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN46_class_I_Rep_3 1 487.28741455078125 2 487.287474 972.560395 0.0081885 3.9902E-06 -0.19954 -9.7235E-05 -0.19135 -9.3245E-05 487.28735718275624 29.157 0.77298 29.157 28.84 29.613 0 136 66 3 0 0 0 0.82752 3 4548 4548;4621;4662 23.79 0 1 168500 21417 824 13253 13262 25677;25678;25679 25677 0.07301742960294177 LERLIIRGSL 10 Unmodified _LERLIIRGSL_ 0 0 0 ENST00000396048.6_1_3:44771160-44775771:+|nuORF ENST00000396048.6_1_3:44771160-44775771:+|nuORF ENST00000396048.6_1_3:44771160-44775771:+|nuORF MSMS UPN47_class_I_Rep_1 2 585.78955078125 2 585.371872 1168.72919 NaN NaN NaN NaN NaN NaN NaN 36.692 1 40.362 39.862 40.862 3.6692 0 0 0 0.53105 1 6879 6879 1.3295 0 1 21418 6562 13254 13263 25680 25680 0.15157644593818986 LERQQLRLR 9 Unmodified _LERQQLRLR_ 0 0 0 nc|ENSG00000244274|Q9BQY9-3|DBNDD2;ENSG00000244274|ENST00000372710|DBNDD2;nc|ENSG00000244274|Q9BQY9|DBNDD2;nc|ENSG00000244274|Q9BQY9-4|DBNDD2 nc|ENSG00000244274|Q9BQY9-3|DBNDD2 nc|ENSG00000244274|Q9BQY9-3|DBNDD2 MULTI-MSMS UPN46_class_I_Rep_3 1 404.58251953125 3 404.582556 1210.72584 -0.11371 -4.6005E-05 -0.18779 -7.5977E-05 -0.3015 -0.00012198 404.5826067396632 33.729 0.2689 33.729 33.637 33.906 0 27 19 2 0 0 0 0.42249 1 5942 5942 4.1895 0 1 59194 21419 5727 13255 13264 25681 25681 0.12890394539772387 LERRIFKF 8 Unmodified _LERRIFKF_ 0 0 0 L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|48|3|sense L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|48|3|sense L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|48|3|sense MSMS UPN47_class_I_Rep_1 2 554.833984375 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 103.02 1 106.8 106.3 107.3 3.7788 0 0 0 0.40746 1 25344 25344 0.69038 0.16561 1 21420 15451 13256 13265 25682 25682 0.10577721222125547 LERRKGLV 8 Unmodified _LERRKGLV_ 0 0 0 REV__ENSG00000127831|ENST00000248444|VIL1 REV__ENSG00000127831|ENST00000248444|VIL1 MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 101.94 1 105.45 104.95 105.95 3.5151 0 0 0 0.40738 1 24842 24842 0.79363 0 1 + 21421 18885 13257 13266 25683 25683 0.12232861671009232 LERRRATIRP 10 Unmodified _LERRRATIRP_ 0 0 0 ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1 ENST00000601476.1_1_19:42462288-42463399:-|nuORF ENST00000601476.1_1_19:42462288-42463399:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 422.59234619140625 3 423.261705 1266.76329 -0.54851 -0.00023216 -0.51417 -0.00021763 -1.0627 -0.00044979 423.2615486479352 49.566 0.51654 52.909 52.834 53.351 3.3431 44 31 2 0 0 0 0.84575 1 10840 10840 1.3296 0 1 301100 21422 1735 13258 13267 25684 25684 0.1405748580539239 LERVGIDIL 9 Unmodified _LERVGIDIL_ 0 0 0 L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|20|2|sense L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|20|2|sense L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 514.3106689453125 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 61.815 1 64.982 64.482 65.482 3.1667 0 0 0 0.27207 1 14610 14610 12.241 0 1 21423 12901 13259 13268 25685 25685 0.09510602511431898 LERVGIDIL 9 Unmodified _LERVGIDIL_ 0 0 0 L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|20|2|sense L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|20|2|sense L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 514.3107299804688 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 61.976 1 65.143 64.643 65.643 3.1667 0 0 0 0.27207 1 14660 14660 12.241 0 1 21424 12901 13259 13268 25686 25686 0.09510602511431898 LERVTKKN 8 Unmodified _LERVTKKN_ 0 0 0 L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|48|3|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|48|3|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|48|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.3005676269531 2 494.300916 986.587279 -0.12608 -6.2321E-05 -0.49562 -0.00024499 -0.6217 -0.00030731 494.30051033446995 12.798 0.27989 16.186 16.097 16.377 3.388 68 30 3 0 0 0 0.82752 1 174 174 7.2892 0 1 136060 21425 12663 13260 13269 25687 25687 0.09344851571472645 LESALVIVL 9 Unmodified _LESALVIVL_ 0 0 0 ENST00000456075.5_1_22:22330098-22330355:-|nuORF ENST00000456075.5_1_22:22330098-22330355:-|nuORF ENST00000456075.5_1_22:22330098-22330355:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 478.805419921875 2 478.804968 955.595384 0.058382 2.7954E-05 -0.24709 -0.00011831 -0.18871 -9.0356E-05 478.80485583147856 64.456 0.3656 67.63 67.395 67.761 3.1741 29 25 2 0 0 0 0.33654 1 15446 15446 11.64 0 1 77373 21426 6830 13261 13270 25688 25688 0.11580985768216578 LESDEDNPIF 10 Unmodified _LESDEDNPIF_ 0 0 0 ENSG00000197724|ENST00000359246|PHF2 ENSG00000197724|ENST00000359246|PHF2 ENSG00000197724|ENST00000359246|PHF2 MULTI-MSMS UPN48_class_I_Rep_3 7 589.764892578125 2 589.764226 1177.5139 0.55751 0.0003288 -0.21464 -0.00012659 0.34287 0.00020221 589.764153708757 75.443 0.57034 79.008 78.765 79.335 3.5659 146 61 3 0 0 0 0.40227 1 17712 17712 19.257 19.257 1 486380 21427 5387 13262 13271 25689 25689 -0.06775786452340071 LESEMILLF 9 Unmodified _LESEMILLF_ 0 0 0 REV__L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|33|3|sense REV__L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 547.3076782226562 2 547.793743 1093.57293 NaN NaN NaN NaN NaN NaN NaN 30.058 1 33.37 32.87 33.87 3.3116 0 0 0 0.38478 1 4939 4939 4.3292 1.0479 1 + 21428 27918 13263 13272 25690 25690 0.02989018308312552 LESFGVIIL 9 Unmodified _LESFGVIIL_ 0 0 0 REV__L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|82|1|anti-sense REV__L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7807312011719 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 81.746 1 85.13 84.63 85.63 3.3839 0 0 0 0.38299 1 20368 20368 4.756 0 1 + 21429 27090 13264 13273 25691 25691 0.08452699251199647 LESFGVIIL 9 Unmodified _LESFGVIIL_ 0 0 0 REV__L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|82|1|anti-sense REV__L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7806091308594 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 81.865 1 85.249 84.749 85.749 3.3839 0 0 0 0.38299 1 20400 20400 4.756 0 1 + 21430 27090 13264 13273 25692 25692 0.08452699251199647 LESKKREVT 9 Unmodified _LESKKREVT_ 0 0 0 L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.277099609375 2 545.316763 1088.61897 0.454 0.00024757 0.7623 0.00041569 1.2163 0.00066326 545.3170384646467 78.851 0.23099 82.146 81.998 82.229 3.295 30 23 2 0 0 0 0.12462 1 19682 19682 1.8442 0 1 37388 21431 10605 13265 13274 25693 25693 0.07820799534783873 LESKKREVT 9 Unmodified _LESKKREVT_ 0 0 0 L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.37121 0.00020243 0.26283 0.00014332 0.63404 0.00034575 545.3168055971834 82.185 0.11945 82.185 82.091 82.21 0 0.03324 -0.00017709 NaN 1.8442 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 116490 21432 10605 13265 13274 0.07820799534783873 LESKKREVT 9 Unmodified _LESKKREVT_ 0 0 0 L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 545.316763 1088.61897 0.45726 0.00024935 0.051115 2.7874E-05 0.50838 0.00027723 545.8180822938167 78.623 0.059853 82.158 82.108 82.168 3.5352 0.0064171 -0.00040799 NaN 1.8442 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 77616 21433 10605 13265 13274 0.07820799534783873 LESKKREVT 9 Unmodified _LESKKREVT_ 0 0 0 L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 545.316763 1088.61897 0.48023 0.00026188 0.33447 0.00018239 0.8147 0.00044427 545.3168100838959 78.52 0.23116 82.143 82.035 82.266 3.6222 -0.0091416 -9.8959E-05 NaN 1.8442 39 29 2 NaN NaN NaN NaN 0 NaN NaN 0 59515 21434 10605 13265 13274 0.07820799534783873 LESKKREVT 9 Unmodified _LESKKREVT_ 0 0 0 L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense L1MB5_dup2770|chr6:116712765-116715169:-|1.4264950161556047|0.2238904615654953|2.67|151.0|24|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 545.316763 1088.61897 0.51999 0.00028356 0.3931 0.00021436 0.91309 0.00049792 545.316923968038 78.505 0.17097 82.127 82.041 82.212 3.6215 -0.025169 -3.5014E-05 NaN 1.8442 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 50839 21435 10605 13265 13274 0.07820799534783873 LESLCKIV 8 Unmodified _LESLCKIV_ 0 0 0 L1MEi_dup4999|chr20:41107177-41107847:-|1.3341491210492176|0.1802393010255936|2.89|151.0|55|3|anti-sense L1MEi_dup4999|chr20:41107177-41107847:-|1.3341491210492176|0.1802393010255936|2.89|151.0|55|3|anti-sense L1MEi_dup4999|chr20:41107177-41107847:-|1.3341491210492176|0.1802393010255936|2.89|151.0|55|3|anti-sense MSMS UPN47_class_I_Rep_2 3 452.76287841796875 2 452.762246 903.50994 NaN NaN NaN NaN NaN NaN NaN 34.445 1 37.87 37.37 38.37 3.4253 0 0 0 0.40746 1 6231 6231 0.69038 0 1 21436 13459 13266 13275 25694 25694 0.054324973109373786 LESPYYESSH 10 Unmodified _LESPYYESSH_ 0 0 0 REV__L1P2_dup936|chrX:56103031-56107860:-|1.4124793606161694|0.068103895694995|4.37|151.0|13|1|sense REV__L1P2_dup936|chrX:56103031-56107860:-|1.4124793606161694|0.068103895694995|4.37|151.0|13|1|sense MSMS UPN47_class_I_Rep_2 3 404.5107421875 3 404.512021 1210.51423 NaN NaN NaN NaN NaN NaN NaN 52.815 1 56.142 55.642 56.642 3.3266 0 0 0 0.53105 1 11808 11808 1.7423 0.14999 1 + 21437 28864 13267 13276 25695 25695 -0.08260366732474722 LESSVIQQQ 9 Unmodified _LESSVIQQQ_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS UPN47_class_I_Rep_2 3 516.2718505859375 2 516.272021 1030.52949 -0.27322 -0.00014106 0.61399 0.00031699 0.34077 0.00017593 516.2723675046891 42.388 0.50174 45.75 45.557 46.059 3.3611 49 36 2 0 0 0 0.46869 1 8638 8638 3.9444 0 1 70953 + 21438 20568 13268 13277 25696 25696 0.01544544855391905 LETEGKQL 8 Unmodified _LETEGKQL_ 0 0 0 L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|13|2|sense L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|13|2|sense L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|13|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 459.2498779296875 2 459.250557 916.486562 -0.98292 -0.00045141 -0.20398 -9.368E-05 -1.1869 -0.00054509 459.2505174917586 15.913 0.85104 19.275 19.044 19.895 3.3619 214 102 4 0 0 0 0.72333 1 895 895 7.9102 0 1 138210 21439 13417 13269 13278 25697 25697 0.024977747979505693 LETHRSRV 8 Unmodified _LETHRSRV_ 0 0 0 ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1 ENSG00000188039|ENST00000524140|NWD1 ENSG00000188039|ENST00000524140|NWD1 MULTI-MSMS UPN47_class_I_Rep_1 2 499.2809143066406 2 499.280515 996.546476 -0.056784 -2.8351E-05 2.4727 0.0012345 2.4159 0.0012062 499.28134527219146 46.893 0.18818 50.588 50.439 50.627 3.6951 20 9 3 0 0 0 0.82752 1 9981 9981 2.3027 0.24298 1 44028 21440 5216 13270 13279 25698 25698 0.04806510251853524 LETKKLHR 8 Unmodified _LETKKLHR_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MSMS UPN48_class_I_Rep_3 7 512.8145141601562 2 512.816733 1023.61891 NaN NaN NaN NaN NaN NaN NaN 51.841 1 55.439 54.939 55.939 3.5979 0 0 0 0.38547 1 10659 10659 13.508 0 1 + 21441 19652 13271 13280 25699 25699 0.10804844325423346 LETLKELLA 9 Unmodified _LETLKELLA_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MSMS UPN47_class_I_Rep_2 3 515.3001708984375 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 61.935 1 65.194 64.694 65.694 3.2594 0 0 0 0.38639 1 14592 14592 3.9444 0 1 + 21442 19268 13272 13281 25700 25700 0.09860066934356837 LETLKIFIF 9 Unmodified _LETLKIFIF_ 0 0 0 nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15 nc|ENSG00000113621|Q96J42-2|TXNDC15 nc|ENSG00000113621|Q96J42-2|TXNDC15 MSMS UPN47_class_I_Rep_3 4 562.3433227539062 2 562.341718 1122.66888 NaN NaN NaN NaN NaN NaN NaN 70.765 1 73.976 73.476 74.476 3.2113 0 0 0 0.39428 1 17329 17329 2.0598 0.57785 1 21443 2054 13273 13282 25701 25701 0.11245534210684127 LETPMILF 8 Unmodified _LETPMILF_ 0 0 0 L1M3e_dup528|chr11:5674236-5674694:+|1.6329415845992563|0.3005494605400912|2.44|151.0|35|3|anti-sense L1M3e_dup528|chr11:5674236-5674694:+|1.6329415845992563|0.3005494605400912|2.44|151.0|35|3|anti-sense L1M3e_dup528|chr11:5674236-5674694:+|1.6329415845992563|0.3005494605400912|2.44|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 482.263916015625 2 482.264622 962.514691 NaN NaN NaN NaN NaN NaN NaN 47.407 1 47.407 46.907 47.907 0 0 0 0 0.40581 1 9800 9800 2.8892 0 1 21444 8796 13274 13283 25702 25702 0.031933814536841965 LETQLIGFS 9 Unmodified _LETQLIGFS_ 0 0 0 REV__ENST00000418510.1_1_22:26044617-26045175:+|nuORF REV__ENST00000418510.1_1_22:26044617-26045175:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 504.7661437988281 2 504.274032 1006.53351 0.31146 0.00015706 -0.40678 -0.00020513 -0.095324 -4.807E-05 504.27405325641183 76.422 0.5695 80.005 79.732 80.301 3.5831 109 65 2 0 0 0 0.1154 1 17936 17936 13.042 1.4022 1 271560 + 21445 20577 13275 13284 25703 25703 0.0305063434910835 LETQVRVL 8 Unmodified _LETQVRVL_ 0 0 0 MLT2D_dup187|chr1:114409710-114410125:+|1.1627507993626758|0.1624074165334073|2.84|151.0|33|3|anti-sense MLT2D_dup187|chr1:114409710-114410125:+|1.1627507993626758|0.1624074165334073|2.84|151.0|33|3|anti-sense MLT2D_dup187|chr1:114409710-114410125:+|1.1627507993626758|0.1624074165334073|2.84|151.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.28985595703125 2 479.290017 956.565481 0.23927 0.00011468 -0.28623 -0.00013719 -0.046964 -2.2509E-05 479.28985123319757 54.855 1.0447 58.174 57.787 58.832 3.3187 128 56 3 0 0 0 0.82752 1 12570 12570 7.9102 0 1 334560 21446 16518 13276 13285 25704 25704 0.0854604682289164 LETRGKEL 8 Unmodified _LETRGKEL_ 0 0 0 ENST00000583841.1_1_17:56414766-56414886:+|nuORF ENST00000583841.1_1_17:56414766-56414886:+|nuORF ENST00000583841.1_1_17:56414766-56414886:+|nuORF MSMS UPN48_class_I_Rep_3 7 473.2715759277344 2 473.271824 944.529095 NaN NaN NaN NaN NaN NaN NaN 39.905 1 43.556 43.056 44.056 3.6509 0 0 0 0.40331 1 7031 7031 6.2058 2.2614 1 21447 7572 13277 13286 25705 25705 0.05461169926195453 LETRKKKNK 9 Unmodified _LETRKKKNK_ 0 0 0 ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P ENST00000378770.1_1_4:190394307-190396341:+|nuORF ENST00000378770.1_1_4:190394307-190396341:+|nuORF MSMS UPN47_class_I_Rep_1 2 572.8502197265625 2 572.861672 1143.70879 NaN NaN NaN NaN NaN NaN NaN 13.32 1 16.777 16.277 17.277 3.457 0 0 0 0.39518 1 300 300 1.8442 0.19162 1 21448 6473 13278 13287 25706 25706 0.14268473933998393 LETTYFLL 8 Unmodified _LETTYFLL_ 0 0 0 ENST00000337702.4_1_5:40715322-40715454:-|nuORF ENST00000337702.4_1_5:40715322-40715454:-|nuORF ENST00000337702.4_1_5:40715322-40715454:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.2715759277344 2 500.273501 998.532449 NaN NaN NaN NaN NaN NaN NaN 64.442 1 67.798 67.298 68.298 3.3557 0 0 0 0.36705 1 15312 15312 18.135 0 1 21449 6213 13279 13288 25707 25707 0.033124199801932264 LETWLLRLVWP 11 Unmodified _LETWLLRLVWP_ 0 0 0 REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|27|2|sense REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|27|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 475.2782897949219 3 475.946612 1424.81801 0.25056 0.00011925 -2.0105 -0.00095691 -1.76 -0.00083765 476.2789954785425 59.719 0.31087 63.199 62.999 63.31 3.4801 40 24 2 0 0 0 22.551 1 13176 13176 2.4348 0.52841 1 265330 + 21450 32180 13280 13289 25708 25708 0.12259059833445463 LETYNNKI 8 Unmodified _LETYNNKI_ 0 0 0 L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|63|2|sense L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|63|2|sense L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|63|2|sense MSMS UPN48_class_I_Rep_1 5 497.7655029296875 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 114.02 1 117.65 117.15 118.15 3.6301 0 0 0 0.40625 1 27712 27712 2.3027 0 1 21451 13278 13281 13290 25709 25709 0.01609463689283075 LEVAYNGGKF 10 Unmodified _LEVAYNGGKF_ 0 0 0 REV__ENST00000467683.5_1_1:154523946-154525290:-|nuORF REV__ENST00000467683.5_1_1:154523946-154525290:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 549.8045043945312 2 549.284931 1096.55531 0.39398 0.00021641 0.033237 1.8257E-05 0.42722 0.00023466 549.2849304098022 46.879 0.54128 50.628 50.385 50.926 3.7494 59 39 2 0 0 0 0.84575 1 9192 9192 16.149 3.1066 1 146590 + 21452 19891 13282 13291 25710 25710 0.010894390976773138 LEVDLKLL 8 Unmodified _LEVDLKLL_ 0 0 0 ENST00000556318.1_1_14:57713568-57714414:-|nuORF ENST00000556318.1_1_14:57713568-57714414:-|nuORF ENST00000556318.1_1_14:57713568-57714414:-|nuORF MSMS UPN48_class_I_Rep_3 7 471.7957763671875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 47.977 1 51.611 51.111 52.111 3.6339 0 0 0 0.40604 1 9473 9473 2.5775 0 1 21453 7431 13283 13292 25711 25711 0.10660699251184269 LEVDLKNGY 9 Unmodified _LEVDLKNGY_ 0 0 0 nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4 nc|ENSG00000124193|Q13247-2|SRSF6 nc|ENSG00000124193|Q13247-2|SRSF6 MSMS UPN46_class_I_Rep_3 1 525.7767944335938 2 525.776939 1049.53933 NaN NaN NaN NaN NaN NaN NaN 51.129 1 51.129 50.629 51.629 0 0 0 0 0.064572 1 10846 10846 32.786 9.6373 1 21454 2179 13284 13293 25712 25712 0.016537328607682866 LEVEFTLPL 9 Unmodified _LEVEFTLPL_ 0 0 0 ENST00000535834.1_1_19:16254538-16262324:+|nuORF ENST00000535834.1_1_19:16254538-16262324:+|nuORF ENST00000535834.1_1_19:16254538-16262324:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 530.7999877929688 2 530.799883 1059.58521 0.53354 0.0002832 0.043298 2.2982E-05 0.57684 0.00030619 531.3014345890409 81.489 0.081863 85.174 85.119 85.2 3.685 14 9 2 0 0 0 0.12799 1 19300 19300 28.487 0 1 202400 21455 7330 13285 13294 25713 25713 0.057803780430276674 LEVESRHFL 9 Unmodified _LEVESRHFL_ 0 0 0 REV__ENSG00000176619|ENST00000325327|LMNB2 REV__ENSG00000176619|ENST00000325327|LMNB2 MULTI-MSMS UPN48_class_I_Rep_2 6 565.3031005859375 2 565.303655 1128.59276 0.59463 0.00033614 -0.60168 -0.00034013 -0.007052 -3.9865E-06 565.3031756322866 54.518 0.71002 58.099 57.857 58.567 3.5817 75 45 2 0 0 0 0.31407 1 11472 11472 13.042 2.9685 1 145930 + 21456 20595 13286 13295 25714 25714 0.033605303633066796 LEVFLLYC 8 Unmodified _LEVFLLYC_ 0 0 0 ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 MSMS UPN48_class_I_Rep_3 7 500.2651062011719 2 500.264622 998.514691 NaN NaN NaN NaN NaN NaN NaN 33.112 1 36.801 36.301 37.301 3.6896 0 0 0 0.40738 1 5108 5108 0.79363 0 1 21457 1392 13287 13296 25715 25715 0.015373814536928876 LEVGDIVS 8 Unmodified _LEVGDIVS_ 0 0 0 ENST00000533509.1_1_11:128855854-128936700:-|nuORF;ARHGAP32|p.N455Kfs*10|1|0.11|ENSG00000134909|chr11:128986560-128986561|-/T|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32 ENST00000533509.1_1_11:128855854-128936700:-|nuORF ENST00000533509.1_1_11:128855854-128936700:-|nuORF MSMS UPN46_class_I_Rep_3 1 416.2279052734375 2 416.226551 830.438549 NaN NaN NaN NaN NaN NaN NaN 89.493 1 89.493 88.993 89.993 0 0 0 0 0.40604 1 21531 21531 2.5775 0 1 21458 403 13288 13297 25716 25716 0.016547008779298267 LEVGDIVS 8 Unmodified _LEVGDIVS_ 0 0 0 ENST00000533509.1_1_11:128855854-128936700:-|nuORF;ARHGAP32|p.N455Kfs*10|1|0.11|ENSG00000134909|chr11:128986560-128986561|-/T|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32 ENST00000533509.1_1_11:128855854-128936700:-|nuORF ENST00000533509.1_1_11:128855854-128936700:-|nuORF MSMS UPN46_class_I_Rep_3 1 416.2279357910156 2 416.226551 830.438549 NaN NaN NaN NaN NaN NaN NaN 93.88 1 93.88 93.38 94.38 0 0 0 0 0.40746 1 22765 22765 0.69038 0 1 21459 403 13288 13297 25717 25717 0.016547008779298267 LEVKKQMLM 9 Unmodified _LEVKKQMLM_ 0 0 0 L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|53|3|sense L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|53|3|sense L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|53|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3174438476562 2 560.316863 1118.61917 0.43626 0.00024445 0.24687 0.00013833 0.68314 0.00038277 560.3169800776897 41.163 0.85552 44.914 44.447 45.303 3.7509 186 89 3 0 0 0 0.41259 1 7531 7531 7.2892 7.2892 1 478900 21460 14078 13289 13298 25718 25718 0.06460759938750016 LEVKQEKL 8 Unmodified _LEVKQEKL_ 0 0 0 REV__L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|53|3|sense REV__L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.79791259765625 2 493.797675 985.580796 -0.31423 -0.00015517 0.52555 0.00025952 0.21132 0.00010435 493.79797805157057 23.728 0.43981 27.458 27.313 27.753 3.7298 63 38 2 0 0 0 0.82752 1 3006 3006 3.5965 0 1 65945 + 21461 28979 13290 13299 25719 25719 0.08742913620108084 LEVKQEKL 8 Unmodified _LEVKQEKL_ 0 0 0 REV__L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|53|3|sense REV__L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.79742431640625 2 493.797675 985.580796 -0.12302 -6.0746E-05 0.21059 0.00010399 0.087576 4.3245E-05 493.79776805926394 24.019 0.59996 27.484 27.216 27.816 3.4655 78 50 2 0 0 0 0.82752 2 3081 3081;3119 6.7232 0 1 82804 + 21462 28979 13290 13299 25720;25721 25720 0.08742913620108084 LEVKQEKL 8 Unmodified _LEVKQEKL_ 0 0 0 REV__L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|53|3|sense REV__L1PA10_dup6198|chr16:53251887-53253594:+|3.098683601738891|0.1908289085094748|4.02|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.7980651855469 2 493.797675 985.580796 0.20036 9.8939E-05 0.080369 3.9686E-05 0.28073 0.00013862 493.7976461210599 55.184 1.1607 58.362 57.922 59.083 3.1779 178 71 3 0 0 0 0.82752 1 12779 12779 19.257 0 1 974830 + 21463 28979 13290 13299 25722 25722 0.08742913620108084 LEVKVVPK 8 Unmodified _LEVKVVPK_ 0 0 0 ENSG00000187764|ENST00000422704|SEMA4D ENSG00000187764|ENST00000422704|SEMA4D ENSG00000187764|ENST00000422704|SEMA4D MSMS UPN48_class_I_Rep_3 7 456.3009033203125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.322 1 43.972 43.472 44.472 3.6509 0 0 0 0.40643 1 7156 7156 2.0598 0 1 21464 5205 13291 13300 25723 25723 0.1262842283366581 LEVLHTWN 8 Unmodified _LEVLHTWN_ 0 0 0 L1MB7_dup13027|chrX:136722074-136723339:+|7.141492607662465|0.0470406142057928|7.25|151.0|79|3|anti-sense L1MB7_dup13027|chrX:136722074-136723339:+|7.141492607662465|0.0470406142057928|7.25|151.0|79|3|anti-sense L1MB7_dup13027|chrX:136722074-136723339:+|7.141492607662465|0.0470406142057928|7.25|151.0|79|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 505.7870178222656 2 506.266542 1010.51853 0.24413 0.0001236 -0.35364 -0.00017904 -0.10951 -5.5442E-05 506.2661982599809 57.404 0.41424 60.695 60.441 60.855 3.2912 35 32 2 0 0 0 0.72333 1 13217 13217 2.3027 0 1 94931 21465 10698 13292 13301 25724 25724 0.013691872717458864 LEVLWGIWPE 10 Unmodified _LEVLWGIWPE_ 0 0 0 L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 621.3307495117188 2 621.331882 1240.64921 NaN NaN NaN NaN NaN NaN NaN 69.481 1 73.003 72.503 73.503 3.5216 0 0 0 0.53105 1 16098 16098 3.2813 0 1 21466 10354 13293 13302 25725 25725 0.0385115819992734 LEVLWGIWPE 10 Unmodified _LEVLWGIWPE_ 0 0 0 L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 621.33056640625 2 621.331882 1240.64921 NaN NaN NaN NaN NaN NaN NaN 69.424 1 72.937 72.437 73.437 3.5128 0 0 0 0.53105 1 15992 15992 5.7319 0 1 21467 10354 13293 13302 25726 25726 0.0385115819992734 LEVSFLYDN 9 Unmodified _LEVSFLYDN_ 0 0 0 REV__L1MA5_dup3701|chr14:80623784-80625690:-|1.506811677124802|0.033223916168846|5.5|151.0|89|1|anti-sense REV__L1MA5_dup3701|chr14:80623784-80625690:-|1.506811677124802|0.033223916168846|5.5|151.0|89|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.269287109375 2 550.268947 1098.52334 0.40973 0.00022546 0.047785 2.6295E-05 0.45752 0.00025176 550.2690024165383 73.16 0.32443 76.546 76.362 76.686 3.3861 33 19 2 0 0 0 0.33908 2 17975 17926;17975 11.495 0 1 46240 + 21468 25392 13294 13303 25727;25728 25728 -0.021979733761327225 LEVTPPVVSG 10 Unmodified _LEVTPPVVSG_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS UPN47_class_I_Rep_3 4 499.2817687988281 2 499.281857 996.549162 0.089761 4.4816E-05 0.034324 1.7137E-05 0.12408 6.1953E-05 499.2817675365001 46.51 1.4553 49.754 49.238 50.693 3.2439 226 91 3 0 0 0 0.55983 1 9946 9946 3.9444 0 1 1292600 21469 5446 13295 13304 25729 25729 0.05074920866161392 LEWAWPAK 8 Unmodified _LEWAWPAK_ 0 0 0 REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|112|1|anti-sense REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|112|1|anti-sense MSMS UPN48_class_I_Rep_2 6 500.76702880859375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 111.89 1 115.55 115.05 116.05 3.6666 0 0 0 0.40746 1 26629 26629 0.69038 0 1 + 21470 29883 13296 13305 25730 25730 0.018023926226987896 LEWCFITL 8 Unmodified _LEWCFITL_ 0 0 0 REV__L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|80|1|anti-sense REV__L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_2 6 512.763671875 2 512.762246 1023.50994 NaN NaN NaN NaN NaN NaN NaN 71.885 1 75.435 74.935 75.935 3.5505 0 0 0 0.37681 1 16800 16800 15.847 0 1 + 21471 24542 13297 13306 25731 25731 -0.0008750268907533609 LEWCFITL 8 Unmodified _LEWCFITL_ 0 0 0 REV__L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|80|1|anti-sense REV__L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_3 7 512.7628173828125 2 512.762246 1023.50994 NaN NaN NaN NaN NaN NaN NaN 71.737 1 75.263 74.763 75.763 3.5266 0 0 0 0.3903 1 16679 16679 11.64 0 1 + 21472 24542 13297 13306 25732 25732 -0.0008750268907533609 LEWCFITL 8 Unmodified _LEWCFITL_ 0 0 0 REV__L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|80|1|anti-sense REV__L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_3 7 512.7640991210938 2 512.762246 1023.50994 NaN NaN NaN NaN NaN NaN NaN 71.901 1 75.427 74.927 75.927 3.5266 0 0 0 0.35715 1 16728 16728 20.454 0 1 + 21473 24542 13297 13306 25733 25733 -0.0008750268907533609 LEWHEAPTI 9 Unmodified _LEWHEAPTI_ 0 0 0 TAS1R2|p.M603Hfs*107|1|0.11|ENSG00000179002|chr1:18840316-18840317|-/C|frameshift_variant;ENSG00000179002|ENST00000375371|TAS1R2 TAS1R2|p.M603Hfs*107|1|0.11|ENSG00000179002|chr1:18840316-18840317|-/C|frameshift_variant TAS1R2|p.M603Hfs*107|1|0.11|ENSG00000179002|chr1:18840316-18840317|-/C|frameshift_variant MSMS UPN47_class_I_Rep_3 4 548.274658203125 2 548.277106 1094.53966 NaN NaN NaN NaN NaN NaN NaN 49.268 1 52.502 52.002 53.002 3.2345 0 0 0 0.38639 1 10785 10785 3.9444 0.3479 1 21474 4842 13298 13307 25734 25734 -0.0038284741938241496 LEWHPDEAV 9 Unmodified _LEWHPDEAV_ 0 0 0 REV__L1PA10_dup276|chr1:174901607-174902942:-|2.2320383280369835|0.0388607516305891|5.84|151.0|45|1|anti-sense REV__L1PA10_dup276|chr1:174901607-174902942:-|2.2320383280369835|0.0388607516305891|5.84|151.0|45|1|anti-sense MSMS UPN47_class_I_Rep_3 4 548.26171875 2 548.258914 1094.50327 NaN NaN NaN NaN NaN NaN NaN 106.42 1 109.95 109.45 110.45 3.5367 0 0 0 0.38478 1 26018 26018 4.3292 1.334 1 + 21475 28952 13299 13308 25735 25735 -0.0401972431611739 LEYFHILEI 9 Unmodified _LEYFHILEI_ 0 0 0 Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 588.8182373046875 2 588.818607 1175.62266 -0.038369 -2.2592E-05 -0.45071 -0.00026539 -0.48908 -0.00028798 588.818335972611 36.205 0.7683 39.874 39.549 40.317 3.6692 93 55 2 0 0 0 0.35081 1 6775 6775 10.824 0 1 135260 21476 33428 13300 13309 25736 25736 0.0418746930861289 LEYFHILEI 9 Unmodified _LEYFHILEI_ 0 0 0 Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|129|3|anti-sense MSMS UPN47_class_I_Rep_1 2 588.8178100585938 2 588.818607 1175.62266 NaN NaN NaN NaN NaN NaN NaN 60.563 1 63.944 63.444 64.444 3.3815 0 0 0 0.36505 1 14142 14142 7.2892 0 1 21477 33428 13300 13309 25737 25737 0.0418746930861289 LEYFHQRN 8 Unmodified _LEYFHQRN_ 0 0 0 REV__ENSG00000071205|ENST00000336498|ARHGAP10 REV__ENSG00000071205|ENST00000336498|ARHGAP10 MSMS UPN48_class_I_Rep_2 6 553.7696533203125 2 553.772522 1105.53049 NaN NaN NaN NaN NaN NaN NaN 110.99 1 114.66 114.16 115.16 3.669 0 0 0 0.40625 1 26396 26396 2.3027 0.24298 1 + 21478 17811 13301 13310 25738 25738 -0.01805195985048158 LEYVPCGSEKN 11 Unmodified _LEYVPCGSEKN_ 0 0 0 L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|240|2|anti-sense L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|240|2|anti-sense L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|240|2|anti-sense MSMS UPN48_class_I_Rep_3 7 619.78955078125 2 619.789721 1237.56489 NaN NaN NaN NaN NaN NaN NaN 58.605 1 62.128 61.628 62.628 3.5231 0 0 0 0.38417 1 12715 12715 5.2969 1.7004 1 21479 15453 13302 13311 25739 25739 -0.044391606791123195 LEYVSLHFL 9 Unmodified _LEYVSLHFL_ 0 0 0 L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|156|2|anti-sense L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|156|2|anti-sense L1PBa1_dup423|chr15:67436180-67439603:+|2.196773948398374|0.269755532154854|3.03|151.0|156|2|anti-sense MSMS UPN47_class_I_Rep_1 2 560.8034057617188 2 560.8055 1119.59645 NaN NaN NaN NaN NaN NaN NaN 64.756 1 68.111 67.611 68.611 3.3557 0 0 0 0.28335 1 15404 15404 11.64 0 1 21480 15403 13303 13312 25740 25740 0.04143200137150416 LFAALLIKC 9 Unmodified _LFAALLIKC_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MSMS UPN48_class_I_Rep_1 5 496.3044128417969 2 496.304081 990.59361 NaN NaN NaN NaN NaN NaN NaN 75.311 1 78.811 78.311 79.311 3.4996 0 0 0 0.39428 1 17835 17835 2.0598 0 1 21481 1025 13304 13313 25741 25741 0.09793653478641318 LFAFFNAL 8 Unmodified _LFAFFNAL_ 0 0 0 REV__AluSx1_dup35150|chr6:15254758-15255033:+|1.75828713978642|0.0071471310258558|7.94|151.0|19|2|anti-sense REV__AluSx1_dup35150|chr6:15254758-15255033:+|1.75828713978642|0.0071471310258558|7.94|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_3 7 471.7664794921875 2 471.757821 941.501089 NaN NaN NaN NaN NaN NaN NaN 44.174 1 47.813 47.313 48.313 3.6385 0 0 0 0.36148 1 8311 8311 19.439 0 1 + 21482 17176 13305 13314 25742 25742 0.027998917367540344 LFAFTLTASF 10 Unmodified _LFAFTLTASF_ 0 0 0 L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|72|3|anti-sense L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|72|3|anti-sense L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|72|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 558.7614135742188 2 559.30005 1116.58555 0.44085 0.00024657 -0.35433 -0.00019817 0.086527 4.8395E-05 559.2995759549204 68.573 0.1114 71.77 71.737 71.849 3.1977 14 9 2 0 0 0 0.84575 1 16676 16676 3.2813 0.70383 1 46659 21483 11293 13306 13315 25743 25743 0.03191797762860915 LFAGFENFLL 10 Unmodified _LFAGFENFLL_ 0 0 0 ENSG00000188269|ENST00000322301|OR7A5 ENSG00000188269|ENST00000322301|OR7A5 ENSG00000188269|ENST00000322301|OR7A5 MULTI-MSMS UPN48_class_I_Rep_2 6 585.8134765625 2 585.813325 1169.6121 0.47562 0.00027863 -0.2303 -0.00013491 0.24532 0.00014371 585.8131368887132 76.417 1.0217 80.018 79.402 80.424 3.6012 323 120 4 0 0 0 0.43106 1 17927 17927 17.113 0 1 1098400 21484 5224 13307 13316 25744 25744 0.03407486654191416 LFAGGPNGPL 10 Unmodified _LFAGGPNGPL_ 0 0 0 REV__nc|ENSG00000101082|Q9H6Q3-4|SLA2 REV__nc|ENSG00000101082|Q9H6Q3-4|SLA2 MULTI-MSMS UPN48_class_I_Rep_1 5 471.7554016113281 2 471.75581 941.497067 0.09555 4.5076E-05 -0.13693 -6.4596E-05 -0.041377 -1.952E-05 471.75564918642584 43.508 1.0507 47.019 46.693 47.744 3.5103 195 86 3 0 0 0 0.44806 1 8292 8292 15.847 15.847 1 891460 + 21485 18146 13308 13317 25745 25745 0.023978022430469537 LFAGPHSTL 9 Unmodified _LFAGPHSTL_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS UPN48_class_I_Rep_3 7 471.755859375 2 471.75581 941.497067 0.12317 5.8106E-05 -0.21797 -0.00010283 -0.094803 -4.4724E-05 471.75564550411383 43.407 1.089 47.045 46.654 47.743 3.6385 195 80 3 0 0 0 0.15878 1 7990 7990 24.674 0 1 1069100 21486 1777 13309 13318 25746 25746 0.023978022430469537 LFAHLMIV 8 Unmodified _LFAHLMIV_ 0 0 0 REV__L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|84|3|anti-sense REV__L1ME1_dup2840|chr2:24322423-24323722:+|1.6770635635662787|0.0510789946068624|5.04|151.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 472.2752380371094 2 472.275324 942.536095 NaN NaN NaN NaN NaN NaN NaN 48.606 1 48.606 48.106 49.106 0 0 0 0 0.4032 1 10141 10141 6.3541 0 1 + 21487 27731 13310 13319 25747 25747 0.06252811273054704 LFAKALFLLSF 11 Unmodified _LFAKALFLLSF_ 0 0 0 REV__L1ME3E_dup235|chr1:108912940-108913734:+|1.5323733014599688|0.1041769198509571|3.88|151.0|46|2|anti-sense REV__L1ME3E_dup235|chr1:108912940-108913734:+|1.5323733014599688|0.1041769198509571|3.88|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_1 5 635.3851318359375 2 635.383917 1268.75328 NaN NaN NaN NaN NaN NaN NaN 95.103 1 98.72 98.22 99.22 3.6167 0 0 0 0.38417 1 22896 22896 1.1933 0 1 + 21488 28157 13311 13320 25748 25748 0.12965485027439172 LFALMFNL 8 Unmodified _LFALMFNL_ 0 0 0 REV__L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|127|2|anti-sense REV__L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|127|2|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7668762207031 2 484.767332 967.52011 NaN NaN NaN NaN NaN NaN NaN 94.341 1 98.242 97.742 98.742 3.9016 0 0 0 0.40604 1 22356 22356 2.5775 0 1 + 21489 27642 13312 13321 25749 25749 0.0350510503615169 LFALPGRRW 9 Unmodified _LFALPGRRW_ 0 0 0 REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense REV__L1PA11_dup3592|chr15:35339625-35342625:-|1.1149595156277532|0.0239827999507373|5.54|151.0|159|3|anti-sense MSMS UPN47_class_I_Rep_1 2 558.3253173828125 2 558.327268 1114.63998 NaN NaN NaN NaN NaN NaN NaN 91.026 1 94.732 94.232 95.232 3.7053 0 0 0 0.40038 1 22729 22729 0.6015 0 1 + 21490 29031 13313 13322 25750 25750 0.08724854424917794 LFALSKQT 8 Unmodified _LFALSKQT_ 0 0 0 REV__L1M3_dup91|chr1:50589507-50590699:-|1.3210057643577986|0.0254274015773017|5.7|151.0|16|2|sense REV__L1M3_dup91|chr1:50589507-50590699:-|1.3210057643577986|0.0254274015773017|5.7|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 454.26483154296875 2 454.26601 906.517468 -0.9286 -0.00042183 0.63291 0.00028751 -0.29569 -0.00013432 454.2661341846908 23.235 0.23255 26.585 26.405 26.637 3.3503 26 18 2 0 0 0 0.82752 1 2880 2880 0.79363 0 1 36558 + 21491 24309 13314 13323 25751 25751 0.06046972902856851 LFAPLETL 8 Unmodified _LFAPLETL_ 0 0 0 nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2 nc|ENSG00000130224|Q5VUJ6-2|LRCH2 nc|ENSG00000130224|Q5VUJ6-2|LRCH2 MSMS UPN48_class_I_Rep_2 6 452.59722900390625 2 452.262936 902.51132 NaN NaN NaN NaN NaN NaN NaN 60.555 1 64.034 63.534 64.534 3.4785 0 0 0 0.40738 1 13382 13382 0.79363 0 1 21492 2645 13315 13324 25752 25752 0.056164546713375785 LFAPWGMSF 9 Unmodified _LFAPWGMSF_ 0 0 0 REV__ENSG00000135905.20,DOCK10,chr2,-,I56.1,224775116,224778137|27|6.66|1|intron REV__ENSG00000135905.20,DOCK10,chr2,-,I56.1,224775116,224778137|27|6.66|1|intron MSMS UPN46_class_I_Rep_3 1 528.2557983398438 2 528.254588 1054.49462 NaN NaN NaN NaN NaN NaN NaN 68.797 1 68.797 68.297 69.297 0 0 0 0 0.1074 1 15727 15727 23.148 2.2772 1 + 21493 19161 13316 13325 25753 25753 -0.030443694862697157 LFASFHTIF 9 Unmodified _LFASFHTIF_ 0 0 0 REV__L1MC5a_dup981|chr1:221735540-221735677:+|1.1787211238154207|0.1633906312071949|2.85|151.0|2|1|sense REV__L1MC5a_dup981|chr1:221735540-221735677:+|1.1787211238154207|0.1633906312071949|2.85|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 541.7880859375 2 541.78711 1081.55967 NaN NaN NaN NaN NaN NaN NaN 15.267 1 18.654 18.154 19.154 3.3864 0 0 0 0.38478 1 775 775 4.3292 0 1 + 21494 27178 13317 13326 25754 25754 0.02214948311234366 LFAVIFVVLC 10 Unmodified _LFAVIFVVLC_ 0 0 0 REV__L1MEc_dup8596|chr7:138467642-138468350:-|1.6779598136809797|0.0290101112045681|5.85|151.0|39|2|anti-sense REV__L1MEc_dup8596|chr7:138467642-138468350:-|1.6779598136809797|0.0290101112045681|5.85|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_3 7 562.334716796875 2 562.332839 1122.65112 NaN NaN NaN NaN NaN NaN NaN 109.08 1 112.76 112.26 113.26 3.6751 0 0 0 0.53105 1 25888 25888 1.8442 0 1 + 21495 28489 13318 13327 25755 25755 0.09470495684217894 LFAVYVQT 8 Unmodified _LFAVYVQT_ 0 0 0 REV__ENST00000457455.1_1_1:184023496-184023998:+|nuORF REV__ENST00000457455.1_1_1:184023496-184023998:+|nuORF MSMS UPN48_class_I_Rep_3 7 470.76904296875 2 470.760561 939.506569 NaN NaN NaN NaN NaN NaN NaN 50.788 1 54.398 53.898 54.898 3.6105 0 0 0 0.39624 1 10341 10341 9.3474 0.75416 1 + 21496 21157 13319 13328 25756 25756 0.03439570528564673 LFAWRLWP 8 Unmodified _LFAWRLWP_ 0 0 0 MER77B_dup767|chr10:63369755-63370322:+|1.7861653675185492|0.0348793507805006|5.68|151.0|18|3|sense MER77B_dup767|chr10:63369755-63370322:+|1.7861653675185492|0.0348793507805006|5.68|151.0|18|3|sense MER77B_dup767|chr10:63369755-63370322:+|1.7861653675185492|0.0348793507805006|5.68|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 544.8056640625 2 544.805637 1087.59672 NaN NaN NaN NaN NaN NaN NaN 88.724 1 88.724 88.224 89.224 0 0 0 0 0.40738 1 21320 21320 0.79363 0 1 21497 16216 13320 13329 25757 25757 0.056426646476666065 LFAYFYDSI 9 Unmodified _LFAYFYDSI_ 0 0 0 REV__nc|ENSG00000101464|Q9H490-2|PIGU REV__nc|ENSG00000101464|Q9H490-2|PIGU MULTI-MSMS UPN47_class_I_Rep_1 2 569.8043212890625 2 569.776408 1137.53826 0.33925 0.0001933 -0.60141 -0.00034267 -0.26216 -0.00014937 569.7760764289252 55.939 0.92715 59.418 59.019 59.946 3.4785 101 52 3 0 0 0 0.46434 1 12878 12878 4.3292 0 1 128820 + 21498 18164 13321 13330 25758 25758 -0.025004815081501874 LFCCAFDQF 9 Unmodified _LFCCAFDQF_ 0 0 0 REV__L1M5_dup48166|chr17:29751750-29752916:+|6.246580125385043|0.054398655247771|6.84|151.0|80|3|anti-sense REV__L1M5_dup48166|chr17:29751750-29752916:+|6.246580125385043|0.054398655247771|6.84|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.2289428710938 2 547.227713 1092.44087 NaN NaN NaN NaN NaN NaN NaN 72.987 1 76.46 75.96 76.96 3.4732 0 0 0 0.11494 1 17169 17169 21.747 0.87544 1 + 21499 24689 13322 13331 25759 25759 -0.10164909980312586 LFCFCYLF 8 Unmodified _LFCFCYLF_ 0 0 0 REV__L1MDa_dup570|chr2:68228373-68229033:-|1.726147422229824|0.0102849469954037|7.39|151.0|45|3|anti-sense REV__L1MDa_dup570|chr2:68228373-68229033:-|1.726147422229824|0.0102849469954037|7.39|151.0|45|3|anti-sense MSMS UPN47_class_I_Rep_2 3 528.2395629882812 2 528.240092 1054.46563 NaN NaN NaN NaN NaN NaN NaN 55.529 1 58.839 58.339 59.339 3.3102 0 0 0 0.39167 1 12641 12641 11.114 0 1 + 21500 27539 13323 13332 25760 25760 -0.059422301069389505 LFCFHLTEL 9 Unmodified _LFCFHLTEL_ 0 0 0 L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 561.7879638671875 2 561.786253 1121.55795 NaN NaN NaN NaN NaN NaN NaN 64.748 1 68.003 67.503 68.503 3.2556 0 0 0 0.11494 1 15447 15447 21.747 0 1 21501 13070 13324 13333 25761 25761 0.002035712309407245 LFCFHLTEL 9 Unmodified _LFCFHLTEL_ 0 0 0 L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 561.7882080078125 2 561.786253 1121.55795 NaN NaN NaN NaN NaN NaN NaN 64.879 1 68.134 67.634 68.634 3.2556 0 0 0 0.19137 1 15485 15485 16.942 0 1 21502 13070 13324 13333 25762 25762 0.002035712309407245 LFCFHLTEL 9 Unmodified _LFCFHLTEL_ 0 0 0 L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 561.7877807617188 2 561.786253 1121.55795 NaN NaN NaN NaN NaN NaN NaN 65.045 1 68.301 67.801 68.801 3.2556 0 0 0 0.13551 1 15536 15536 20.454 0 1 21503 13070 13324 13333 25763 25763 0.002035712309407245 LFCFHLTEL 9 Unmodified _LFCFHLTEL_ 0 0 0 L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense L1MEc_dup18264|chr22:40065596-40066364:-|2.617795081675301|0.0263848408100408|6.63|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 561.7861938476562 2 561.786253 1121.55795 NaN NaN NaN NaN NaN NaN NaN 65.081 1 68.337 67.837 68.837 3.2556 0 0 0 0.22485 1 15547 15547 14.838 0 1 21504 13070 13324 13333 25764 25764 0.002035712309407245 LFCFLRKA 8 Unmodified _LFCFLRKA_ 0 0 0 REV__Tigger1_dup5585|chr7:47552364-47553793:+|1.1833747475906682|0.0571377696784197|4.37|149.0|63|1|anti-sense REV__Tigger1_dup5585|chr7:47552364-47553793:+|1.1833747475906682|0.0571377696784197|4.37|149.0|63|1|anti-sense MSMS UPN48_class_I_Rep_1 5 499.2858581542969 2 499.286223 996.557893 NaN NaN NaN NaN NaN NaN NaN 28.483 1 32.04 31.54 32.54 3.5571 0 0 0 0.40738 1 3819 3819 0.79363 0 1 + 21505 32472 13325 13334 25765 25765 0.059476160216149765 LFCFSKYF 8 Unmodified _LFCFSKYF_ 0 0 0 L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|93|2|anti-sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|93|2|anti-sense L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|93|2|anti-sense MSMS UPN46_class_I_Rep_3 1 527.7562255859375 2 527.756964 1053.49937 NaN NaN NaN NaN NaN NaN NaN 77.118 1 77.118 76.618 77.618 0 0 0 0 0.40738 1 18016 18016 0.79363 0 1 21506 10198 13326 13335 25766 25766 -0.02523485343522225 LFCILVGCMY 10 Unmodified _LFCILVGCMY_ 0 0 0 L1PA13_dup5872|chrX:154702859-154703668:+|1.3604548558146454|0.0546350120909928|4.64|147.0|64|3|anti-sense L1PA13_dup5872|chrX:154702859-154703668:+|1.3604548558146454|0.0546350120909928|4.64|147.0|64|3|anti-sense L1PA13_dup5872|chrX:154702859-154703668:+|1.3604548558146454|0.0546350120909928|4.64|147.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2781372070312 2 581.278892 1160.54323 0.16191 9.4113E-05 0.038873 2.2596E-05 0.20078 0.00011671 581.2788360791114 47.666 0.78136 51.361 50.989 51.77 3.6951 111 70 2 0 0 0 0.56281 1 10296 10296 1.8442 1.8442 1 453860 21507 13773 13327 13336 25767 25767 -0.03061960233026184 LFCKKLPNCL 10 Unmodified _LFCKKLPNCL_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|82|2|anti-sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|82|2|anti-sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 589.8248291015625 2 589.824855 1177.63516 NaN NaN NaN NaN NaN NaN NaN 60.934 1 64.099 63.599 64.599 3.1651 0 0 0 0.53105 1 14340 14340 3.5965 0 1 21508 11134 13328 13337 25768 25768 0.05344466175642992 LFCLDQME 8 Unmodified _LFCLDQME_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MSMS UPN46_class_I_Rep_3 1 499.7972106933594 2 499.719721 997.424889 NaN NaN NaN NaN NaN NaN NaN 69.226 1 69.226 68.726 69.726 0 0 0 0 0.40604 1 15851 15851 2.5775 0 1 + 21509 21290 13329 13338 25769 25769 -0.07392616217191517 LFCMKGIF 8 Unmodified _LFCMKGIF_ 0 0 0 REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|123|1|anti-sense REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|123|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.7474670410156 2 479.748085 957.481616 -0.18086 -8.6767E-05 -0.61596 -0.00029551 -0.79682 -0.00038227 479.7476881677632 42.469 1.0274 45.83 45.503 46.53 3.3611 119 72 2 0 0 0 0.82752 2 8586 8586;8746 19.439 1.304 1 170250 + 21510 24019 13330 13339 25770;25771 25770 0.0011747612998078694 LFCPALCEQ 9 Unmodified _LFCPALCEQ_ 0 0 0 nc|ENSG00000253953|Q9UN71-2|PCDHGB4;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253953|ENST00000519479|PCDHGB4 nc|ENSG00000253953|Q9UN71-2|PCDHGB4 nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MULTI-MSMS UPN47_class_I_Rep_3 4 512.234130859375 2 512.235538 1022.45652 0.18069 9.2558E-05 -0.88464 -0.00045314 -0.70394 -0.00036058 512.2350186558533 57.882 0.56811 61.05 60.764 61.332 3.1681 73 41 2 0 0 0 0.40174 1 13452 13452 7.9102 1.7044 1 122060 21511 5750 13331 13340 25772 25772 -0.053806234632475025 LFCRVWVWF 9 Unmodified _LFCRVWVWF_ 0 0 0 L1PB1_dup5171|chr6:88659095-88662158:+|1.1452601270383036|0.019765370694069|5.86|151.0|183|3|anti-sense L1PB1_dup5171|chr6:88659095-88662158:+|1.1452601270383036|0.019765370694069|5.86|151.0|183|3|anti-sense L1PB1_dup5171|chr6:88659095-88662158:+|1.1452601270383036|0.019765370694069|5.86|151.0|183|3|anti-sense MSMS UPN46_class_I_Rep_3 1 628.3233642578125 2 628.325879 1254.63721 NaN NaN NaN NaN NaN NaN NaN 40.847 1 40.847 40.347 41.347 0 0 0 0 0.40038 1 7957 7957 0.6015 0.076735 1 21512 15137 13332 13341 25773 25773 0.020072629757578397 LFCWIYSPF 9 Unmodified _LFCWIYSPF_ 0 0 0 REV__L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|372|3|anti-sense REV__L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|372|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 588.3370971679688 2 588.283346 1174.55214 0.48303 0.00028416 2.083 0.0012254 2.566 0.0015096 588.2844329702236 69.279 0.47807 72.8 72.477 72.956 3.5216 57 37 2 0 0 0 0.086155 1 15992 15992 11.64 0 1 138150 + 21513 29002 13333 13342 25774 25774 -0.02815527280722563 LFCWTCIPK 9 Unmodified _LFCWTCIPK_ 0 0 0 REV__L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|54|2|anti-sense REV__L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_2 3 555.7783813476562 2 555.777373 1109.54019 NaN NaN NaN NaN NaN NaN NaN 60.217 1 63.49 62.99 63.99 3.2731 0 0 0 0.38299 1 14075 14075 4.756 0.81161 1 + 21514 26493 13334 13343 25775 25775 -0.010194672955776696 LFCWYFQK 8 Unmodified _LFCWYFQK_ 0 0 0 L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|145|1|anti-sense L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|145|1|anti-sense L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|145|1|anti-sense MSMS UPN47_class_I_Rep_2 3 567.7559814453125 2 567.775688 1133.53682 NaN NaN NaN NaN NaN NaN NaN 24.344 1 27.809 27.309 28.309 3.4655 0 0 0 0.40738 1 3211 3211 0.79363 0.10326 1 21515 14773 13335 13344 25776 25776 -0.024603940779115874 LFCYRRPV 8 Unmodified _LFCYRRPV_ 0 0 0 REV__Tigger1_dup10274|chr15:30840863-30842312:-|5.465369581788592|0.0097420156532368|9.13|151.0|29|3|sense REV__Tigger1_dup10274|chr15:30840863-30842312:-|5.465369581788592|0.0097420156532368|9.13|151.0|29|3|sense MSMS UPN47_class_I_Rep_1 2 527.2866821289062 2 527.286754 1052.55896 NaN NaN NaN NaN NaN NaN NaN 26.079 1 29.841 29.341 30.341 3.7624 0 0 0 0.40738 1 3677 3677 0.79363 0 1 + 21516 32325 13336 13345 25777 25777 0.03477830390534109 LFDALRPPT 9 Unmodified _LFDALRPPT_ 0 0 0 REV__AluSx_dup71384|chr11:66632610-66632911:+|1.1600632510260431|0.2741407033602979|2.08|151.0|17|2|anti-sense REV__AluSx_dup71384|chr11:66632610-66632911:+|1.1600632510260431|0.2741407033602979|2.08|151.0|17|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.29248046875 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 66.681 1 70.167 69.667 70.667 3.4866 0 0 0 0.36505 1 15253 15253 7.2892 0 1 + 21517 17152 13337 13346 25778 25778 0.05234046822897653 LFDFLKKF 8 Unmodified _LFDFLKKF_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|54|1|anti-sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|54|1|anti-sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_2 3 529.3070068359375 2 529.307678 1056.6008 NaN NaN NaN NaN NaN NaN NaN 58.509 1 61.79 61.29 62.29 3.2818 0 0 0 0.388 1 13550 13550 12.532 0.89125 1 21518 13281 13338 13347 25779 25779 0.07476709350703459 LFDFQSEL 8 Unmodified _LFDFQSEL_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-5|CSMD3 REV__nc|ENSG00000164796|Q7Z407-5|CSMD3 MSMS UPN47_class_I_Rep_3 4 499.7377624511719 2 499.745108 997.475663 NaN NaN NaN NaN NaN NaN NaN 47.171 1 50.415 49.915 50.915 3.2439 0 0 0 0.40157 1 10157 10157 7.2892 0 1 + 21519 20085 13339 13348 25780 25780 -0.023176275763148624 LFDGNLLRL 9 Unmodified _LFDGNLLRL_ 0 0 0 REV__L1MC5a_dup12790|chr13:51723117-51724222:-|3.033515170380217|0.1512792817807625|4.33|151.0|49|1|anti-sense REV__L1MC5a_dup12790|chr13:51723117-51724222:-|3.033515170380217|0.1512792817807625|4.33|151.0|49|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.8106079101562 2 530.811116 1059.60768 0.3461 0.00018372 0.44032 0.00023373 0.78642 0.00041744 530.8113453313188 63.161 0.36335 66.521 66.254 66.617 3.3595 43 26 2 0 0 0 0.35081 1 14896 14896 10.824 0 1 123160 + 21520 27115 13340 13349 25781 25781 0.08026022231297247 LFDLPRIPS 9 Unmodified _LFDLPRIPS_ 0 0 0 L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|162|3|anti-sense L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|162|3|anti-sense L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|162|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.3057861328125 2 529.305667 1056.59678 0.34636 0.00018333 -0.15402 -8.1524E-05 0.19234 0.00010181 529.3055077544708 58.264 0.32214 61.701 61.472 61.794 3.437 31 21 2 0 0 0 0.31407 1 13413 13413 13.042 2.9685 1 84536 21521 9075 13341 13350 25782 25782 0.0707461985698501 LFDLVFPYI 9 Unmodified _LFDLVFPYI_ 0 0 0 REV__L1PA6_dup3755|chrX:96809519-96815659:-|5.356200008406083|0.0992016793176227|5.75|151.0|334|3|anti-sense REV__L1PA6_dup3755|chrX:96809519-96815659:-|5.356200008406083|0.0992016793176227|5.75|151.0|334|3|anti-sense MSMS UPN47_class_I_Rep_2 3 563.8112182617188 2 563.812793 1125.61103 NaN NaN NaN NaN NaN NaN NaN 66.88 1 70.144 69.644 70.644 3.2636 0 0 0 0.19137 1 16095 16095 16.942 0 1 + 21522 28829 13342 13351 25783 25783 0.05325272285290339 LFDPRDEWK 9 Unmodified _LFDPRDEWK_ 0 0 0 REV__nc|ENSG00000115085|P43403-2|ZAP70 REV__nc|ENSG00000115085|P43403-2|ZAP70 MULTI-MSMS UPN47_class_I_Rep_3 4 603.300048828125 2 603.301113 1204.58767 -0.24044 -0.00014506 -0.060954 -3.6774E-05 -0.3014 -0.00018183 603.3009595109569 26.02 0.74556 29.368 29.126 29.872 3.3478 115 70 2 0 0 0 0.49026 1 3712 3712 1.6526 0 1 126920 + 21523 18542 13343 13352 25784 25784 -0.006437734993596678 LFDPTSTSL 9 Unmodified _LFDPTSTSL_ 0 0 0 ENST00000468137.5_1_3:127392970-127394843:+|nuORF ENST00000468137.5_1_3:127392970-127394843:+|nuORF ENST00000468137.5_1_3:127392970-127394843:+|nuORF MSMS UPN47_class_I_Rep_3 4 490.75006103515625 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 25.053 1 28.404 27.904 28.904 3.3509 0 0 0 0.28335 1 3460 3460 11.64 0 1 21524 6912 13344 13353 25785 25785 -0.004336449219067617 LFDRTIYFP 9 Unmodified _LFDRTIYFP_ 0 0 0 L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|66|3|anti-sense L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|66|3|anti-sense L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|66|3|anti-sense MSMS UPN46_class_I_Rep_3 1 586.311279296875 2 586.310949 1170.60735 NaN NaN NaN NaN NaN NaN NaN 58.965 1 58.965 58.465 59.465 0 0 0 0 0.39326 1 13008 13008 2.3027 0 1 21525 14120 13345 13354 25786 25786 0.028866025114439253 LFECPFFLF 9 Unmodified _LFECPFFLF_ 0 0 0 L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|149|1|anti-sense L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|149|1|anti-sense L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|149|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.7853393554688 2 581.785721 1161.55689 0.43552 0.00025338 -0.71883 -0.00041821 -0.28332 -0.00016483 581.7851876115803 39.192 0.92993 42.697 42.37 43.3 3.5048 159 88 2 0 0 0 0.40174 1 6815 6815 7.9102 0.80843 1 263130 21526 13823 13346 13355 25787 25787 -0.01742643137936284 LFEEFLMNWH 10 Unmodified _LFEEFLMNWH_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MSMS UPN46_class_I_Rep_3 1 455.8808288574219 3 455.881391 1364.62234 NaN NaN NaN NaN NaN NaN NaN 24.336 1 24.336 23.836 24.836 0 0 0 0 0.53105 1 3183 3183 0.15932 0 1 21527 5186 13347 13356 25788 25788 -0.04538273682896943 LFEEMEEQN 9 Unmodified _LFEEMEEQN_ 0 0 0 REV__L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|21|1|sense REV__L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|21|1|sense MSMS UPN48_class_I_Rep_2 6 584.7439575195312 2 584.744979 1167.4754 NaN NaN NaN NaN NaN NaN NaN 70.737 1 74.272 73.772 74.772 3.5359 0 0 0 0.37476 1 16469 16469 6.7232 1.4925 1 + 21528 30715 13348 13357 25789 25789 -0.10163415358488237 LFEIYYFFF 9 Unmodified _LFEIYYFFF_ 0 0 0 L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|46|3|anti-sense L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|46|3|anti-sense L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_3 7 644.8165893554688 2 644.818076 1287.6216 NaN NaN NaN NaN NaN NaN NaN 34.352 1 38.032 37.532 38.532 3.6797 0 0 0 0.40038 1 5448 5448 0.6015 0 1 21529 11544 13349 13358 25790 25790 -0.010707450602922108 LFELFSFS 8 Unmodified _LFELFSFS_ 0 0 0 REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|80|3|anti-sense REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 495.2539978027344 2 495.252569 988.490584 NaN NaN NaN NaN NaN NaN NaN 19.699 1 23.237 22.737 23.737 3.5378 0 0 0 0.39819 1 1536 1536 8.5933 0 1 + 21530 24730 13350 13359 25791 25791 -0.004121357083249677 LFEPASGYL 9 Unmodified _LFEPASGYL_ 0 0 0 REV__L1M4b_dup538|chr2:138535558-138537145:-|1.3202578073707396|0.0136083797604754|6.6|151.0|93|3|anti-sense REV__L1M4b_dup538|chr2:138535558-138537145:-|1.3202578073707396|0.0136083797604754|6.6|151.0|93|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 498.755615234375 2 498.755475 995.496398 0.18333 9.1437E-05 0.15666 7.8135E-05 0.33999 0.00016957 498.7554670534669 76.094 0.4616 79.497 79.19 79.652 3.4034 61 43 2 0 0 0 0.46869 1 18724 18724 3.9444 3.9444 1 84530 + 21531 24563 13351 13360 25792 25792 -0.001530371966509847 LFERFANRG 9 Unmodified _LFERFANRG_ 0 0 0 REV__nc|ENSG00000147509|O76081-5|RGS20 REV__nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN47_class_I_Rep_2 3 555.2793579101562 2 555.296165 1108.57778 NaN NaN NaN NaN NaN NaN NaN 66.799 1 70.058 69.558 70.558 3.2588 0 0 0 0.39598 1 16070 16070 1.6526 0.32309 1 + 21532 19570 13352 13361 25793 25793 0.027830832859081056 LFERIFRV 8 Unmodified _LFERIFRV_ 0 0 0 L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|240|3|anti-sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|240|3|anti-sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|240|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.321533203125 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 33.083 1 33.083 32.583 33.583 0 0 0 0 0.40746 1 5744 5744 0.69038 0 1 21533 13886 13353 13362 25794 25794 0.09258032330785682 LFETVEEL 8 Unmodified _LFETVEEL_ 0 0 0 ENSG00000116745|ENST00000262340|RPE65 ENSG00000116745|ENST00000262340|RPE65 ENSG00000116745|ENST00000262340|RPE65 MULTI-MSMS UPN47_class_I_Rep_3 4 490.7809753417969 2 490.252766 978.490978 -0.35455 -0.00017382 1.0236 0.00050184 0.66909 0.00032802 490.2532710675361 35.278 0.5898 38.542 38.322 38.912 3.2639 63 41 2 0 0 0 0.82752 1 6469 6469 9.3474 0 1 61780 21534 2198 13354 13363 25795 25795 0.0008723922086346647 LFFATFRQ 8 Unmodified _LFFATFRQ_ 0 0 0 REV__nc|ENSG00000108387|O43236-8|SEPTIN4 REV__nc|ENSG00000108387|O43236-8|SEPTIN4 MSMS UPN46_class_I_Rep_3 1 515.2775268554688 2 515.279452 1028.54435 NaN NaN NaN NaN NaN NaN NaN 37.839 1 37.839 37.339 38.339 0 0 0 0 0.40738 1 7155 7155 0.79363 0 1 + 21535 18380 13355 13364 25796 25796 0.03122081514038655 LFFAVEFFV 9 Unmodified _LFFAVEFFV_ 0 0 0 L1M2_dup3285|chr6:34336344-34336666:-|1.2167175017279328|0.0106460298204254|6.84|151.0|13|2|anti-sense L1M2_dup3285|chr6:34336344-34336666:-|1.2167175017279328|0.0106460298204254|6.84|151.0|13|2|anti-sense L1M2_dup3285|chr6:34336344-34336666:-|1.2167175017279328|0.0106460298204254|6.84|151.0|13|2|anti-sense MSMS UPN47_class_I_Rep_3 4 559.8005981445312 2 559.799686 1117.58482 NaN NaN NaN NaN NaN NaN NaN 42.488 1 45.727 45.227 46.227 3.2394 0 0 0 0.39428 1 8722 8722 2.0598 0.57785 1 21536 8679 13356 13365 25797 25797 0.030730031138091363 LFFCVCFFAY 10 Unmodified _LFFCVCFFAY_ 0 0 0 REV__L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|90|1|anti-sense REV__L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|90|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 630.2861328125 2 630.285031 1258.55551 0.4477 0.00028218 1.2235 0.00077114 1.6712 0.0010533 630.2858982809483 67.516 0.21374 70.707 70.651 70.865 3.1914 22 13 2 0 0 0 0.56281 1 16378 16378 1.8442 0 1 58247 + 21537 25744 13357 13366 25798 25798 -0.06342600498351203 LFFEGYVFS 9 Unmodified _LFFEGYVFS_ 0 0 0 L1MEi_dup2844|chr9:6521896-6522810:-|1.0022529948077|0.0103613537932359|6.6|150.0|69|3|anti-sense L1MEi_dup2844|chr9:6521896-6522810:-|1.0022529948077|0.0103613537932359|6.6|150.0|69|3|anti-sense L1MEi_dup2844|chr9:6521896-6522810:-|1.0022529948077|0.0103613537932359|6.6|150.0|69|3|anti-sense MSMS UPN47_class_I_Rep_1 2 554.7689819335938 2 554.771126 1107.5277 NaN NaN NaN NaN NaN NaN NaN 60.029 1 63.427 62.927 63.927 3.3982 0 0 0 0.11494 1 13983 13983 21.747 3.6117 1 21538 13453 13358 13367 25799 25799 -0.021764641625850345 LFFEIDYY 8 Unmodified _LFFEIDYY_ 0 0 0 L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|62|3|anti-sense L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|62|3|anti-sense L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.260498046875 2 555.263133 1108.51171 NaN NaN NaN NaN NaN NaN NaN 62.703 1 66.063 65.563 66.563 3.3595 0 0 0 0.39819 1 14791 14791 8.5933 0 1 21539 12972 13359 13368 25800 25800 -0.03820170399490053 LFFETGSCF 9 Unmodified _LFFETGSCF_ 0 0 0 AluJr_dup23877|chr5:137967621-137967910:+|1.0649767060654798|0.0365082943381905|4.87|151.0|21|3|anti-sense AluJr_dup23877|chr5:137967621-137967910:+|1.0649767060654798|0.0365082943381905|4.87|151.0|21|3|anti-sense AluJr_dup23877|chr5:137967621-137967910:+|1.0649767060654798|0.0365082943381905|4.87|151.0|21|3|anti-sense MSMS UPN46_class_I_Rep_3 1 525.7449951171875 2 525.733686 1049.45282 NaN NaN NaN NaN NaN NaN NaN 70.39 1 70.39 69.89 70.89 0 0 0 0 0.34056 1 16172 16172 8.5933 0 1 21540 139 13360 13369 25801 25801 -0.06992969965449447 LFFFFAAS 8 Unmodified _LFFFFAAS_ 0 0 0 REV__ENST00000174618.4_1_17:2304187-2304379:-|nuORF REV__ENST00000174618.4_1_17:2304187-2304379:-|nuORF MSMS UPN47_class_I_Rep_3 4 475.2421569824219 2 475.244547 948.47454 NaN NaN NaN NaN NaN NaN NaN 67.841 1 71.032 70.532 71.532 3.1914 0 0 0 0.37715 1 16448 16448 15.768 0 1 + 21541 21465 13361 13370 25802 25802 -0.0017579715457713974 LFFFFCWV 8 Unmodified _LFFFFCWV_ 0 0 0 L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense MSMS UPN47_class_I_Rep_1 2 554.7689819335938 2 554.769874 1107.5252 NaN NaN NaN NaN NaN NaN NaN 60.244 1 63.642 63.142 64.142 3.3982 0 0 0 0.39167 1 14048 14048 11.114 0 1 21542 15105 13362 13371 25803 25803 -0.024265911012207653 LFFFFCWV 8 Unmodified _LFFFFCWV_ 0 0 0 L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.7693481445312 2 554.769874 1107.5252 0.50144 0.00027818 -1.3212 -0.00073298 -0.8198 -0.0004548 554.7687971594643 59.606 1.0329 62.879 62.558 63.591 3.2731 135 64 3 0 0 0 0.82752 1 14049 14049 11.114 0 1 962090 21543 15105 13362 13371 25804 25804 -0.024265911012207653 LFFFFCWV 8 Unmodified _LFFFFCWV_ 0 0 0 L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|204|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.7692260742188 2 554.769874 1107.5252 0.4859 0.00026956 -0.59404 -0.00032956 -0.10814 -5.9993E-05 554.7688285493546 60.349 0.2271 63.614 63.583 63.81 3.2654 23 16 3 0 0 0 0.82752 1 14153 14153 17.087 0 1 82404 21544 15105 13362 13371 25805 25805 -0.024265911012207653 LFFFFSLGR 9 Unmodified _LFFFFSLGR_ 0 0 0 REV__ENST00000381254.6_1_2:17935470-17935542:+|nuORF REV__ENST00000381254.6_1_2:17935470-17935542:+|nuORF MSMS UPN48_class_I_Rep_3 7 567.3110961914062 2 567.310752 1132.60695 NaN NaN NaN NaN NaN NaN NaN 118.5 1 122.09 121.59 122.59 3.5847 0 0 0 0.39428 1 28181 28181 2.0598 0 1 + 21545 22060 13363 13372 25806 25806 0.045952275822401134 LFFFHLFAA 9 Unmodified _LFFFHLFAA_ 0 0 0 REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF REV__ENST00000518820.1_1_8:143561046-143604069:+|nuORF MSMS UPN47_class_I_Rep_2 3 556.799072265625 2 556.80002 1111.58549 NaN NaN NaN NaN NaN NaN NaN 54.136 1 57.454 56.954 57.954 3.3187 0 0 0 0.3264 1 12214 12214 9.3474 0 1 + 21546 18731 13364 13373 25807 25807 0.03415842553499715 LFFFKGSYY 9 Unmodified _LFFFKGSYY_ 0 0 0 L1M8_dup656|chr6:16440781-16442715:+|2.747841214284513|0.0955307491663302|4.85|151.0|100|2|anti-sense L1M8_dup656|chr6:16440781-16442715:+|2.747841214284513|0.0955307491663302|4.85|151.0|100|2|anti-sense L1M8_dup656|chr6:16440781-16442715:+|2.747841214284513|0.0955307491663302|4.85|151.0|100|2|anti-sense MSMS UPN47_class_I_Rep_1 2 586.2844848632812 2 586.294768 1170.57498 NaN NaN NaN NaN NaN NaN NaN 53.482 1 57.01 56.51 57.51 3.5278 0 0 0 0.381 1 11986 11986 5.2307 0.47466 1 21547 9249 13365 13374 25808 25808 -0.0034818489157260046 LFFFKKVY 8 Unmodified _LFFFKKVY_ 0 0 0 L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|180|3|anti-sense L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|180|3|anti-sense L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|180|3|anti-sense MSMS UPN47_class_I_Rep_3 4 546.3168334960938 2 546.318046 1090.62154 NaN NaN NaN NaN NaN NaN NaN 46.614 1 49.858 49.358 50.358 3.2439 0 0 0 0.40746 1 9988 9988 0.69038 0 1 21548 10359 13366 13375 25809 25809 0.07985299730376028 LFFFLKRLG 9 Unmodified _LFFFLKRLG_ 0 0 0 L1PA15-16_dup94|chr2:127267016-127267944:-|2.856277363333932|0.4544604623198149|2.65|151.0|53|2|anti-sense L1PA15-16_dup94|chr2:127267016-127267944:-|2.856277363333932|0.4544604623198149|2.65|151.0|53|2|anti-sense L1PA15-16_dup94|chr2:127267016-127267944:-|2.856277363333932|0.4544604623198149|2.65|151.0|53|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.8477783203125 2 570.850045 1139.68554 NaN NaN NaN NaN NaN NaN NaN 22.844 1 22.844 22.344 23.344 0 0 0 0 0.40038 1 2775 2775 0.6015 0 1 21549 14010 13367 13376 25810 25810 0.12128079887315835 LFFFLTVIF 9 Unmodified _LFFFLTVIF_ 0 0 0 L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|219|2|anti-sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|219|2|anti-sense L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|219|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7525024414062 2 573.833529 1145.6525 NaN NaN NaN NaN NaN NaN NaN 18.774 1 22.355 21.855 22.855 3.5806 0 0 0 0.40038 1 1629 1629 0.6015 0 1 21550 13720 13368 13377 25811 25811 0.08550453044585993 LFFFSFYLF 9 Unmodified _LFFFSFYLF_ 0 0 0 REV__L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|72|1|anti-sense REV__L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|72|1|anti-sense MSMS UPN47_class_I_Rep_1 2 615.8140258789062 2 615.815336 1229.61612 NaN NaN NaN NaN NaN NaN NaN 71.909 1 75.284 74.784 75.784 3.3751 0 0 0 0.38478 1 17561 17561 4.3292 0 1 + 21551 27687 13369 13378 25812 25812 0.010495761478750865 LFFFSYHW 8 Unmodified _LFFFSYHW_ 0 0 0 REV__ENSG00000182749|ENST00000675840|PAQR7 REV__ENSG00000182749|ENST00000675840|PAQR7 MSMS UPN47_class_I_Rep_1 2 573.7719116210938 2 573.774003 1145.53345 NaN NaN NaN NaN NaN NaN NaN 65.308 1 68.664 68.164 69.164 3.3557 0 0 0 0.40738 1 15569 15569 0.79363 0.10326 1 + 21552 20764 13370 13379 25813 25813 -0.03349320860252192 LFFFVGLYL 9 Unmodified _LFFFVGLYL_ 0 0 0 REV__L1M5_dup37399|chr11:68472399-68472648:-|1.2711348617391656|0.035471162289324|5.16|151.0|18|3|anti-sense REV__L1M5_dup37399|chr11:68472399-68472648:-|1.2711348617391656|0.035471162289324|5.16|151.0|18|3|anti-sense MSMS UPN47_class_I_Rep_2 3 559.816162109375 2 559.817879 1117.6212 NaN NaN NaN NaN NaN NaN NaN 76.652 1 79.983 79.483 80.483 3.3315 0 0 0 0.12887 1 18982 18982 20.871 3.9289 1 + 21553 24665 13371 13380 25814 25814 0.06709880010498637 LFFFYPFF 8 Unmodified _LFFFYPFF_ 0 0 0 L1MEh_dup2258|chr13:45363578-45364045:-|1.7078687377930923|0.364339214895766|2.23|151.0|27|2|anti-sense;ENSG00000086062.13,B4GALT1,chr9,-,I1.1,33135425,33166757|25|13.57|1|intron L1MEh_dup2258|chr13:45363578-45364045:-|1.7078687377930923|0.364339214895766|2.23|151.0|27|2|anti-sense L1MEh_dup2258|chr13:45363578-45364045:-|1.7078687377930923|0.364339214895766|2.23|151.0|27|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 564.2593994140625 2 564.283672 1126.55279 0.35781 0.00020191 1.3988 0.00078935 1.7567 0.00099125 564.2846940706935 70.368 0.058403 73.739 73.705 73.764 3.3713 8 5 2 0 0 0 0.72333 1 17090 17090 2.8892 0 1 28665 21554 1276 13372 13381 25815 25815 -0.005423645693326762 LFFHFAGVY 9 Unmodified _LFFHFAGVY_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|33|1|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|33|1|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_1 2 550.7979125976562 2 550.781828 1099.5491 NaN NaN NaN NaN NaN NaN NaN 71.665 1 75.04 74.54 75.54 3.3751 0 0 0 0.3264 1 17487 17487 9.3474 0 1 21555 7807 13373 13382 25816 25816 0.0033096565680352796 LFFKVPALKKK 11 Unmodified _LFFKVPALKKK_ 0 0 0 L1M5_dup49440|chr18:21841379-21841887:+|1.0488126694311486|0.0885352685486604|3.57|151.0|26|1|anti-sense L1M5_dup49440|chr18:21841379-21841887:+|1.0488126694311486|0.0885352685486604|3.57|151.0|26|1|anti-sense L1M5_dup49440|chr18:21841379-21841887:+|1.0488126694311486|0.0885352685486604|3.57|151.0|26|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.79937744140625 3 440.291831 1317.85366 -0.32322 -0.00014231 1.5072 0.0006636 1.184 0.00052129 440.2924810851124 63.662 0.038963 66.918 66.894 66.933 3.2556 5 3 2 0 0 0 22.551 1 15120 15120 0.094841 0 1 36335 21556 9194 13374 13383 25817 25817 0.2074514208106848 LFFLAPHI 8 Unmodified _LFFLAPHI_ 0 0 0 REV__L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|149|1|anti-sense REV__L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|149|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.2806091308594 2 479.281463 956.548374 0.23099 0.00011071 -1.1021 -0.00052822 -0.87112 -0.00041751 479.2809631528016 58.271 0.38404 61.758 61.46 61.844 3.487 33 21 2 0 0 0 0.82752 1 12685 12685 2.8892 0 1 81818 + 21557 30192 13375 13384 25818 25818 0.06836171007739722 LFFLIRRLYAF 11 Unmodified _LFFLIRRLYAF_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 486.9589538574219 3 486.958852 1457.85473 0.28542 0.00013899 0.10041 4.8897E-05 0.38583 0.00018788 486.95885576647436 98.886 0.1487 98.886 98.812 98.961 0 26 17 2 0 0 0 0.68478 1 24083 24083 0.094841 0 1 275850 + 21558 29334 13376 13385 25819 25819 0.14411356450045787 LFFLIRRLYAF 11 Unmodified _LFFLIRRLYAF_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 486.958852 1457.85473 0.28542 0.00013899 0.10041 4.8897E-05 0.38583 0.00018788 486.95885576647436 98.886 0.1487 98.886 98.812 98.961 0 -0.12411 4.0368E-05 NaN 0.094841 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 275850 + 21559 29334 13376 13385 0.14411356450045787 LFFLIRRLYAF 11 Unmodified _LFFLIRRLYAF_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 486.958852 1457.85473 0.44082 0.00021466 -0.46549 -0.00022667 -0.024664 -1.2011E-05 486.9585374688463 95.48 0.069778 98.956 98.918 98.988 3.4753 -0.054123 -0.00078634 NaN 0.094841 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 56105 + 21560 29334 13376 13385 0.14411356450045787 LFFLIRRLYAF 11 Unmodified _LFFLIRRLYAF_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|280|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 486.958852 1457.85473 0.23546 0.00011466 0.29439 0.00014336 0.52986 0.00025802 486.9587388700806 95.286 0.062859 99.188 99.151 99.213 3.9016 0.17823 0.00032375 NaN 0.094841 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 70128 + 21561 29334 13376 13385 0.14411356450045787 LFFLNYFY 8 Unmodified _LFFLNYFY_ 0 0 0 REV__L1MC5a_dup6129|chr6:30202312-30203042:+|2.0103054139338976|0.315081270021458|2.67|151.0|47|3|anti-sense REV__L1MC5a_dup6129|chr6:30202312-30203042:+|2.0103054139338976|0.315081270021458|2.67|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_2 6 563.7848510742188 2 563.784036 1125.55352 NaN NaN NaN NaN NaN NaN NaN 85.857 1 89.563 89.063 90.063 3.7058 0 0 0 0.4044 1 20434 20434 4.756 0 1 + 21562 27169 13377 13386 25820 25820 -0.004235699203036347 LFFLNYFY 8 Unmodified _LFFLNYFY_ 0 0 0 REV__L1MC5a_dup6129|chr6:30202312-30203042:+|2.0103054139338976|0.315081270021458|2.67|151.0|47|3|anti-sense REV__L1MC5a_dup6129|chr6:30202312-30203042:+|2.0103054139338976|0.315081270021458|2.67|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 563.7838134765625 2 563.784036 1125.55352 NaN NaN NaN NaN NaN NaN NaN 85.717 1 89.488 88.988 89.988 3.7701 0 0 0 0.4044 1 20334 20334 4.756 0 1 + 21563 27169 13377 13386 25821 25821 -0.004235699203036347 LFFMGPLAY 9 Unmodified _LFFMGPLAY_ 0 0 0 L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|58|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|58|3|anti-sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_2 3 529.7723999023438 2 529.772614 1057.53067 NaN NaN NaN NaN NaN NaN NaN 25.396 1 28.879 28.379 29.379 3.483 0 0 0 0.39326 1 3518 3518 2.3027 0 1 21564 9129 13378 13387 25822 25822 0.004210876905972327 LFFNAVYF 8 Unmodified _LFFNAVYF_ 0 0 0 REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|135|3|anti-sense REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|135|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7720031738281 2 510.763104 1019.51165 NaN NaN NaN NaN NaN NaN NaN 78.583 1 82.028 81.528 82.528 3.4456 0 0 0 0.40604 1 19543 19543 2.5775 0 1 + 21565 32656 13379 13388 25823 25823 0.002678743911815218 LFFNERLF 8 Unmodified _LFFNERLF_ 0 0 0 L1MA4_dup270|chr1:107801848-107806513:-|5.076904183028894|0.0219848685092129|7.85|151.0|225|2|anti-sense L1MA4_dup270|chr1:107801848-107806513:-|5.076904183028894|0.0219848685092129|7.85|151.0|225|2|anti-sense L1MA4_dup270|chr1:107801848-107806513:-|5.076904183028894|0.0219848685092129|7.85|151.0|225|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.3017578125 2 543.292559 1084.57057 NaN NaN NaN NaN NaN NaN NaN 62.453 1 65.915 65.415 66.415 3.4625 0 0 0 0.40364 1 13978 13978 5.7604 0 1 21566 9672 13380 13389 25824 25824 0.03166350685501129 LFFRCMIEH 9 Unmodified _LFFRCMIEH_ 0 0 0 REV__nc|ENSG00000164330|Q9UH73-2|EBF1 REV__nc|ENSG00000164330|Q9UH73-2|EBF1 MULTI-MSMS UPN48_class_I_Rep_3 7 598.2909545898438 2 598.291179 1194.56781 0.44046 0.00026352 -1.1733 -0.000702 -0.73289 -0.00043848 598.2904420603795 38.022 0.6823 41.682 41.365 42.047 3.6595 100 65 2 0 0 0 0.37599 1 6480 6480 9.3831 0 1 119030 + 21567 32039 13381 13390 25825 25825 -0.02169564035307303 LFFRLFIVDI 10 Unmodified _LFFRLFIVDI_ 0 0 0 L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|325|3|anti-sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|325|3|anti-sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|325|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 641.884033203125 2 641.881542 1281.74853 0.59092 0.0003793 1.6077 0.0010319 2.1986 0.0014112 641.8823456429254 89.624 0.17653 93.081 92.969 93.146 3.4571 40 24 2 0 0 0 0.56333 1 22267 22267 1.4819 0.41044 1 81099 21568 9518 13382 13391 25826 25826 0.1189260088467563 LFFRLFIVDI 10 Unmodified _LFFRLFIVDI_ 0 0 0 L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|325|3|anti-sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|325|3|anti-sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|325|3|anti-sense MSMS UPN48_class_I_Rep_1 5 641.8834838867188 2 641.881542 1281.74853 NaN NaN NaN NaN NaN NaN NaN 89.088 1 92.711 92.211 93.211 3.6229 0 0 0 0.53105 1 21380 21380 1.4819 0.28856 1 21569 9518 13382 13391 25827 25827 0.1189260088467563 LFFRLGML 8 Unmodified _LFFRLGML_ 0 0 0 ENST00000402983.5_1_1:109203628-109203694:-|nuORF ENST00000402983.5_1_1:109203628-109203694:-|nuORF ENST00000402983.5_1_1:109203628-109203694:-|nuORF MSMS UPN47_class_I_Rep_3 4 498.7893981933594 2 498.788598 995.562644 NaN NaN NaN NaN NaN NaN NaN 63.356 1 66.525 66.025 67.025 3.1698 0 0 0 0.40364 1 15082 15082 5.7604 0 1 21570 6602 13383 13392 25828 25828 0.06468500164396573 LFFSDGYC 8 Unmodified _LFFSDGYC_ 0 0 0 REV__Tigger1_dup11249|chr18:42078410-42079647:-|1.101500721299389|0.2335360163340396|2.24|151.0|75|3|anti-sense REV__Tigger1_dup11249|chr18:42078410-42079647:-|1.101500721299389|0.2335360163340396|2.24|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_1 2 476.19854736328125 2 476.199479 950.384405 NaN NaN NaN NaN NaN NaN NaN 45.544 1 49.244 48.744 49.744 3.6999 0 0 0 0.40738 1 9576 9576 0.79363 0 1 + 21571 32357 13384 13393 25829 25829 -0.09277214545318202 LFFSFFFFH 9 Unmodified _LFFSFFFFH_ 0 0 0 REV__L1M1_dup4519|chr9:5157654-5159889:+|4.64374623598569|0.0287979510382044|7.33|151.0|91|1|anti-sense REV__L1M1_dup4519|chr9:5157654-5159889:+|4.64374623598569|0.0287979510382044|7.33|151.0|91|1|anti-sense MSMS UPN47_class_I_Rep_1 2 619.806396484375 2 619.805303 1237.59605 NaN NaN NaN NaN NaN NaN NaN 56.629 1 60.086 59.586 60.586 3.4572 0 0 0 0.40038 1 12949 12949 0.6015 0 1 + 21572 24102 13385 13394 25830 25830 -0.013241747920574198 LFFVCAAFI 9 Unmodified _LFFVCAAFI_ 0 0 0 REV__ENSG00000221970|ENST00000641044|OR2A1 REV__ENSG00000221970|ENST00000641044|OR2A1 MSMS UPN48_class_I_Rep_3 7 515.77490234375 2 515.775157 1029.53576 NaN NaN NaN NaN NaN NaN NaN 41.33 1 44.975 44.475 45.475 3.6458 0 0 0 0.381 1 7453 7453 5.2307 0 1 + 21573 21238 13386 13395 25831 25831 0.022173915531766397 LFFVTFIY 8 Unmodified _LFFVTFIY_ 0 0 0 REV__Tigger3b_dup5738|chr17:46090691-46091784:+|2.3151600667062056|0.0284223004426914|6.35|150.0|39|3|sense REV__Tigger3b_dup5738|chr17:46090691-46091784:+|2.3151600667062056|0.0284223004426914|6.35|150.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 525.3032836914062 2 525.288954 1048.56336 NaN NaN NaN NaN NaN NaN NaN 57.83 1 61.267 60.767 61.767 3.437 0 0 0 0.40404 1 13308 13308 5.2307 0 1 + 21574 32761 13387 13396 25832 25832 0.04101618085087466 LFFVVGAVLP 10 Unmodified _LFFVVGAVLP_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|193|1|anti-sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|193|1|anti-sense MSMS UPN47_class_I_Rep_2 3 531.322509765625 2 531.323328 1060.6321 NaN NaN NaN NaN NaN NaN NaN 81.642 1 85.026 84.526 85.526 3.3839 0 0 0 0.53105 1 20337 20337 1.8442 0 1 + 21575 29815 13388 13397 25833 25833 0.10421282384800179 LFFWTFRL 8 Unmodified _LFFWTFRL_ 0 0 0 REV__L1MB5_dup7126|chr14:102862421-102864141:-|1.5885296113988263|0.021279450399602|6.22|151.0|73|1|anti-sense REV__L1MB5_dup7126|chr14:102862421-102864141:-|1.5885296113988263|0.021279450399602|6.22|151.0|73|1|anti-sense MSMS UPN48_class_I_Rep_3 7 565.3161010742188 2 565.313295 1128.61204 NaN NaN NaN NaN NaN NaN NaN 26.126 1 29.893 29.393 30.393 3.7663 0 0 0 0.40738 1 3270 3270 0.79363 0 1 + 21576 26094 13389 13398 25834 25834 0.052875314448328936 LFFWWFFA 8 Unmodified _LFFWWFFA_ 0 0 0 REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|236|1|anti-sense REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|236|1|anti-sense MSMS UPN48_class_I_Rep_1 5 582.288818359375 2 582.289288 1162.56402 NaN NaN NaN NaN NaN NaN NaN 40.025 1 43.529 43.029 44.029 3.5048 0 0 0 0.40738 1 7134 7134 0.79363 0.10326 1 + 21577 30200 13390 13399 25835 25835 -0.010755424752005638 LFFYLHEK 8 Unmodified _LFFYLHEK_ 0 0 0 REV__L1PA5_dup6363|chr9:92993467-92999588:-|6.17889793006067|0.0949799032351452|6.02|151.0|344|3|anti-sense REV__L1PA5_dup6363|chr9:92993467-92999588:-|6.17889793006067|0.0949799032351452|6.02|151.0|344|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.795166015625 2 548.794935 1095.57532 0.43092 0.00023649 -0.4379 -0.00024032 -0.0069797 -3.8304E-06 548.7946122774032 41.095 0.61766 44.846 44.511 45.129 3.7509 87 62 2 0 0 0 0.82752 1 7505 7505 5.2307 0 1 177060 + 21578 29793 13391 13400 25836 25836 0.031352348282553066 LFFYRYNR 8 Unmodified _LFFYRYNR_ 0 0 0 REV__ENSG00000099904|ENST00000334554|ZDHHC8;REV__ENSG00000156599|ENST00000287169|ZDHHC5 REV__ENSG00000156599|ENST00000287169|ZDHHC5 MSMS UPN47_class_I_Rep_1 2 589.8071899414062 2 589.808908 1177.60326 NaN NaN NaN NaN NaN NaN NaN 23.272 1 26.976 26.476 27.476 3.7042 0 0 0 0.40738 1 2849 2849 0.79363 0 1 + 21579 18074;19799 13392 13401 25837 25837 0.02156557808348225 LFFYRYNR 8 Unmodified _LFFYRYNR_ 0 0 0 REV__ENSG00000099904|ENST00000334554|ZDHHC8;REV__ENSG00000156599|ENST00000287169|ZDHHC5 REV__ENSG00000156599|ENST00000287169|ZDHHC5 MSMS UPN48_class_I_Rep_1 5 589.8098754882812 2 589.808908 1177.60326 NaN NaN NaN NaN NaN NaN NaN 63.258 1 66.72 66.22 67.22 3.4625 0 0 0 0.40738 1 14226 14226 0.79363 0.10326 1 + 21580 18074;19799 13392 13401 25838 25838 0.02156557808348225 LFGDVAMHYIL 11 Unmodified _LFGDVAMHYIL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MSMS UPN48_class_I_Rep_2 6 639.8319702148438 2 639.831191 1277.64783 NaN NaN NaN NaN NaN NaN NaN 64.127 1 67.601 67.101 68.101 3.4743 0 0 0 0.38417 1 14471 14471 5.2969 0.39987 1 21581 2474 13393 13402 25839 25839 0.020112008395472003 LFGFTSSW 8 Unmodified _LFGFTSSW_ 0 0 0 REV__Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|128|3|anti-sense REV__Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|128|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.7289123535156 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.243 1 95.106 94.606 95.606 3.8634 0 0 0 0.39624 1 21638 21638 9.3474 0 1 + 21582 32506 13394 13403 25840 25840 -0.030015755396107124 LFGGEYSGFIL 11 Unmodified _LFGGEYSGFIL_ 0 0 0 REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|156|1|anti-sense REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|156|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.8087158203125 2 601.808239 1201.60193 0.58769 0.00035367 0.30006 0.00018058 0.88775 0.00053425 601.808296870505 75.091 0.17522 78.656 78.553 78.729 3.5659 50 19 4 0 0 0 0.31923 1 17635 17635 30.637 1.555 1 1238900 + 21583 24067 13395 13404 25841 25841 0.009188789289510169 LFGGEYSGFIL 11 Unmodified _LFGGEYSGFIL_ 0 0 0 REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|156|1|anti-sense REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|156|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.8089599609375 2 601.808239 1201.60193 0.58658 0.00035301 0.1992 0.00011988 0.78578 0.00047289 601.8082117857371 75.564 0.47418 79.129 78.919 79.393 3.5658 98 50 3 0 0 0 0.27364 1 17782 17782 18.146 2.8979 1 344350 + 21584 24067 13395 13404 25842 25842 0.009188789289510169 LFGKGHNH 8 Unmodified _LFGKGHNH_ 0 0 0 ENST00000444490.6_1_9:95280096-95280144:-|nuORF ENST00000444490.6_1_9:95280096-95280144:-|nuORF ENST00000444490.6_1_9:95280096-95280144:-|nuORF MSMS UPN47_class_I_Rep_3 4 455.2386169433594 2 455.238119 908.461684 NaN NaN NaN NaN NaN NaN NaN 20.645 1 23.995 23.495 24.495 3.3496 0 0 0 0.40604 1 2167 2167 2.5775 0 1 21585 6783 13396 13405 25843 25843 0.003791845059026855 LFGKTRTTKR 10 Unmodified _LFGKTRTTKR_ 0 0 0 REV__ENSG00000142178|ENST00000270162|SIK1 REV__ENSG00000142178|ENST00000270162|SIK1 MULTI-MSMS UPN47_class_I_Rep_2 3 403.2471618652344 3 403.247173 1206.71969 -0.41258 -0.00016637 -0.53776 -0.00021685 -0.95034 -0.00038322 403.24690785226096 97.132 0.19165 100.61 100.57 100.76 3.4791 38 26 2 0 0 0 0.56333 1 23850 23850 0.62683 0.62683 1 109780 + 21586 19398 13397 13406 25844 25844 0.12459876308253115 LFGKTRTTKR 10 Unmodified _LFGKTRTTKR_ 0 0 0 REV__ENSG00000142178|ENST00000270162|SIK1 REV__ENSG00000142178|ENST00000270162|SIK1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 403.247173 1206.71969 0.063962 2.5792E-05 -1.0837 -0.00043701 -1.0198 -0.00041122 403.2466281997274 100.58 0.14806 100.58 100.46 100.6 0 0.073833 -0.00035285 NaN 0.62683 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 618360 + 21587 19398 13397 13406 0.12459876308253115 LFGKTRTTKR 10 Unmodified _LFGKTRTTKR_ 0 0 0 REV__ENSG00000142178|ENST00000270162|SIK1 REV__ENSG00000142178|ENST00000270162|SIK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 403.247173 1206.71969 -0.14476 -5.8375E-05 -0.66808 -0.0002694 -0.81284 -0.00032778 403.2467909292242 96.795 0.78405 100.4 100.08 100.86 3.6088 -0.099715 0.00014997 NaN 0.62683 268 92 4 NaN NaN NaN NaN 0 NaN NaN 0 912590 + 21588 19398 13397 13406 0.12459876308253115 LFGKTRTTKR 10 Unmodified _LFGKTRTTKR_ 0 0 0 REV__ENSG00000142178|ENST00000270162|SIK1 REV__ENSG00000142178|ENST00000270162|SIK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 403.247173 1206.71969 0.08218 3.3139E-05 -0.79344 -0.00031995 -0.71125 -0.00028681 403.2467088800013 96.634 0.70923 100.41 100.17 100.88 3.7804 -0.089313 -1.6772E-06 NaN 0.62683 279 91 4 NaN NaN NaN NaN 0 NaN NaN 0 734910 + 21589 19398 13397 13406 0.12459876308253115 LFGKTRTTKR 10 Unmodified _LFGKTRTTKR_ 0 0 0 REV__ENSG00000142178|ENST00000270162|SIK1 REV__ENSG00000142178|ENST00000270162|SIK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 403.247173 1206.71969 0.096618 3.8961E-05 -0.90555 -0.00036516 -0.80893 -0.0003262 403.2466934361943 96.603 0.81709 100.51 100.21 101.03 3.9084 0.0078812 -0.00013731 NaN 0.62683 330 109 5 NaN NaN NaN NaN 0 NaN NaN 0 621960 + 21590 19398 13397 13406 0.12459876308253115 LFGLTWQL 8 Unmodified _LFGLTWQL_ 0 0 0 ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1 ENSG00000009694|ENST00000371130|TENM1 ENSG00000009694|ENST00000371130|TENM1 MSMS UPN48_class_I_Rep_3 7 489.27471923828125 2 489.276378 976.538203 NaN NaN NaN NaN NaN NaN NaN 48.05 1 51.684 51.184 52.184 3.6339 0 0 0 0.39819 1 9496 9496 8.5933 0 1 21591 747 13398 13407 25845 25845 0.048995632825153734 LFGRIPMRF 9 Unmodified _LFGRIPMRF_ 0 0 0 ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 MSMS UPN48_class_I_Rep_1 5 568.82275390625 2 568.823504 1135.63245 NaN NaN NaN NaN NaN NaN NaN 72.11 1 75.583 75.083 76.083 3.4732 0 0 0 0.39518 1 16903 16903 1.8442 0.19162 1 21592 4353 13399 13408 25846 25846 0.07006378832988958 LFGWRRLWFRR 11 Unmodified _LFGWRRLWFRR_ 0 0 0 REV__L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|204|1|anti-sense REV__L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|204|1|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8171997070312 3 531.640628 1591.90005 NaN NaN NaN NaN NaN NaN NaN 86.257 1 86.257 85.757 86.757 0 0 0 0 0.38417 1 20620 20620 0.094841 0.094841 1 + 21593 29882 13400 13409 25847 25847 0.12778019755751302 LFHACLLYF 9 Unmodified _LFHACLLYF_ 0 0 0 CON__O76014 CON__O76014 CON__O76014 MSMS UPN47_class_I_Rep_2 3 563.7796630859375 2 563.791338 1125.56812 NaN NaN NaN NaN NaN NaN NaN 74.847 1 78.159 77.659 78.659 3.3127 0 0 0 0.3264 1 18455 18455 9.3474 0 1 + 21594 630 13401 13410 25848 25848 0.010361789562011836 LFHAFYRFL 9 Unmodified _LFHAFYRFL_ 0 0 0 REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|127|3|anti-sense REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|127|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 607.3295288085938 2 607.329476 1212.6444 0.35237 0.000214 -0.093496 -5.6783E-05 0.25887 0.00015722 607.3295286578773 47.482 0.50355 50.723 50.339 50.843 3.2405 50 34 2 0 0 0 0.4823 1 10242 10242 1.8442 0.19162 1 156100 + 21595 24785 13402 13411 25849 25849 0.04658318847850751 LFHALCIFL 9 Unmodified _LFHALCIFL_ 0 0 0 REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|313|3|anti-sense REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|313|3|anti-sense MSMS UPN46_class_I_Rep_3 1 538.8029174804688 2 538.801706 1075.58886 NaN NaN NaN NaN NaN NaN NaN 92.969 1 92.969 92.469 93.469 0 0 0 0 0.12887 1 22517 22517 20.871 0 1 + 21596 29618 13403 13412 25850 25850 0.054087693358496836 LFHALCIFL 9 Unmodified _LFHALCIFL_ 0 0 0 REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|313|3|anti-sense REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|313|3|anti-sense MSMS UPN47_class_I_Rep_2 3 538.80322265625 2 538.801706 1075.58886 NaN NaN NaN NaN NaN NaN NaN 87.687 1 91.134 90.634 91.634 3.4471 0 0 0 0.082921 1 21798 21798 28.173 0 1 + 21597 29618 13403 13412 25851 25851 0.054087693358496836 LFHALCIFL 9 Unmodified _LFHALCIFL_ 0 0 0 REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|313|3|anti-sense REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|313|3|anti-sense MSMS UPN47_class_I_Rep_3 4 538.802978515625 2 538.801706 1075.58886 NaN NaN NaN NaN NaN NaN NaN 87.873 1 91.26 90.76 91.76 3.3873 0 0 0 0.12887 1 22031 22031 20.871 0 1 + 21598 29618 13403 13412 25852 25852 0.054087693358496836 LFHANRNQ 8 Unmodified _LFHANRNQ_ 0 0 0 L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|30|2|sense L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|30|2|sense L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 500.25823974609375 2 500.259582 998.504612 NaN NaN NaN NaN NaN NaN NaN 25.915 1 29.678 29.178 30.178 3.7624 0 0 0 0.40738 1 3630 3630 0.79363 0 1 21599 8715 13404 13413 25853 25853 0.005299545633306479 LFHCFVAF 8 Unmodified _LFHCFVAF_ 0 0 0 L1ME1_dup10335|chr5:122787894-122789429:-|2.1039162228704247|0.2751806887154353|2.93|151.0|69|2|anti-sense L1ME1_dup10335|chr5:122787894-122789429:-|2.1039162228704247|0.2751806887154353|2.93|151.0|69|2|anti-sense L1ME1_dup10335|chr5:122787894-122789429:-|2.1039162228704247|0.2751806887154353|2.93|151.0|69|2|anti-sense MSMS UPN48_class_I_Rep_2 6 492.2442626953125 2 492.244024 982.473494 NaN NaN NaN NaN NaN NaN NaN 36.851 1 40.553 40.053 41.053 3.7021 0 0 0 0.40581 1 6237 6237 2.8892 0 1 21600 12162 13405 13414 25854 25854 -0.01844334795123359 LFHDRRSN 8 Unmodified _LFHDRRSN_ 0 0 0 L1PA4_dup7036|chrX:53148489-53150249:+|2.731782326793075|0.3995078509078404|2.77|151.0|99|3|anti-sense L1PA4_dup7036|chrX:53148489-53150249:+|2.731782326793075|0.3995078509078404|2.77|151.0|99|3|anti-sense L1PA4_dup7036|chrX:53148489-53150249:+|2.731782326793075|0.3995078509078404|2.77|151.0|99|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 522.7704467773438 2 522.770314 1043.52608 0.32312 0.00016892 0.31383 0.00016406 0.63695 0.00033298 522.7704121861127 65.749 1.155 68.934 68.656 69.811 3.1853 135 77 2 0 0 0 0.82752 1 15883 15883 10.824 0 1 191100 21601 14383 13406 13415 25855 25855 0.006053395920616822 LFHFFFLL 8 Unmodified _LFHFFFLL_ 0 0 0 L1MC1_dup1802|chr2:171770504-171770913:+|1.287970474949301|0.1043163113673546|3.63|151.0|18|1|anti-sense L1MC1_dup1802|chr2:171770504-171770913:+|1.287970474949301|0.1043163113673546|3.63|151.0|18|1|anti-sense L1MC1_dup1802|chr2:171770504-171770913:+|1.287970474949301|0.1043163113673546|3.63|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 542.3041381835938 2 542.304939 1082.59532 NaN NaN NaN NaN NaN NaN NaN 61.862 1 65.373 64.873 65.873 3.5104 0 0 0 0.4032 1 13705 13705 6.3541 0 1 21602 11122 13407 13416 25856 25856 0.05733030558894825 LFHFGIRVM 9 Unmodified _LFHFGIRVM_ 0 0 0 L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|93|1|anti-sense L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|93|1|anti-sense L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|93|1|anti-sense MSMS UPN46_class_I_Rep_3 1 560.313232421875 2 560.310229 1118.60591 NaN NaN NaN NaN NaN NaN NaN 52.45 1 52.45 51.95 52.95 0 0 0 0 0.39326 1 11216 11216 2.3027 0.24298 1 21603 11796 13408 13417 25857 25857 0.05134689941655779 LFHFPRQW 8 Unmodified _LFHFPRQW_ 0 0 0 REV__L1MB2_dup6034|chr12:62514690-62515535:+|1.4855108912607808|0.0975174017911342|3.93|151.0|47|3|anti-sense REV__L1MB2_dup6034|chr12:62514690-62515535:+|1.4855108912607808|0.0975174017911342|3.93|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 565.7962646484375 2 565.798343 1129.58213 NaN NaN NaN NaN NaN NaN NaN 39.701 1 43.356 42.856 43.856 3.6557 0 0 0 0.40738 1 6975 6975 0.79363 0.10326 1 + 21604 25757 13409 13418 25858 25858 0.022525924994852176 LFHFQFYL 8 Unmodified _LFHFQFYL_ 0 0 0 L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|179|3|anti-sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|179|3|anti-sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|179|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 557.7862548828125 2 557.789653 1113.56475 0.46259 0.00025803 -0.73541 -0.0004102 -0.27281 -0.00015217 557.7859988261412 77.524 0.11365 80.793 80.725 80.839 3.269 18 12 3 0 0 0 0.72333 1 19317 19317 8.5933 1.304 1 61991 21605 10055 13410 13419 25859 25859 0.01251252173847206 LFHFSDVLF 9 Unmodified _LFHFSDVLF_ 0 0 0 REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|50|1|anti-sense REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.7925415039062 2 562.792392 1123.57023 0.5116 0.00028792 -0.16718 -9.4088E-05 0.34442 0.00019384 562.7922131101055 66.673 0.87162 70.159 69.747 70.618 3.4866 99 58 2 0 0 0 0.17468 3 15239 15193;15239;15327 23.148 3.047 1 215660 + 21606 25235 13411 13420 25860;25861;25862 25861 0.013389309656531623 LFHFSDVLF 9 Unmodified _LFHFSDVLF_ 0 0 0 REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|50|1|anti-sense REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.7927856445312 2 562.792392 1123.57023 0.47452 0.00026706 -0.26349 -0.00014829 0.21103 0.00011877 562.7922314992629 66.62 0.7248 70.128 69.706 70.43 3.5077 90 49 2 0 0 0 0.25207 1 15123 15123 16.942 3.4344 1 267900 + 21607 25235 13411 13420 25863 25863 0.013389309656531623 LFHFVKVY 8 Unmodified _LFHFVKVY_ 0 0 0 REV__L1ME4b_dup20740|chr20:32197826-32198298:+|1.3648642346477668|0.1729706571897287|2.98|151.0|6|1|sense REV__L1ME4b_dup20740|chr20:32197826-32198298:+|1.3648642346477668|0.1729706571897287|2.98|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 526.798095703125 2 526.80002 1051.58549 NaN NaN NaN NaN NaN NaN NaN 32.681 1 32.681 32.181 33.181 0 0 0 0 0.40404 1 5624 5624 5.2307 1.6342 1 + 21608 28280 13412 13421 25864 25864 0.06175842553511757 LFHGAGFAF 9 Unmodified _LFHGAGFAF_ 0 0 0 REV__ENSG00000269113|ENST00000606738|TRABD2B REV__ENSG00000269113|ENST00000606738|TRABD2B MULTI-MSMS UPN48_class_I_Rep_2 6 483.74542236328125 2 483.745245 965.475937 0.16657 8.0579E-05 -0.53077 -0.00025676 -0.3642 -0.00017618 483.74481091234304 44.171 0.81085 47.933 47.634 48.445 3.7617 97 58 2 0 0 0 0.2896 1 8458 8458 14.582 5.2343 1 203740 + 21609 21416 13413 13422 25865 25865 -0.00818163065821409 LFHHNTKSM 9 Unmodified _LFHHNTKSM_ 0 0 0 ENST00000369144.7_1_10:120795412-120795463:-|nuORF ENST00000369144.7_1_10:120795412-120795463:-|nuORF ENST00000369144.7_1_10:120795412-120795463:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 557.8154296875 2 557.776751 1113.53895 0.32711 0.00018246 3.9727 0.0022159 4.2998 0.0023983 557.7795812070659 47.069 0.050938 50.313 50.277 50.328 3.2439 4 2 2 0 0 0 0.12444 1 10119 10119 2.0598 0.21551 1 32428 21610 6372 13414 13423 25866 25866 -0.013279653400559255 LFHHRYVQ 8 Unmodified _LFHHRYVQ_ 0 0 0 REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|2|1|sense REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 550.2925415039062 2 550.293425 1098.5723 NaN NaN NaN NaN NaN NaN NaN 65.838 1 65.838 65.338 66.338 0 0 0 0 0.39408 1 14903 14903 10.183 0.83596 1 + 21611 32559 13415 13424 25867 25867 0.026954044941248867 LFHKTFLF 8 Unmodified _LFHKTFLF_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MSMS UPN46_class_I_Rep_3 1 526.8215942382812 2 526.80002 1051.58549 NaN NaN NaN NaN NaN NaN NaN 32.555 1 32.555 32.055 33.055 0 0 0 0 0.40643 1 5585 5585 2.0598 0 1 + 21612 18503 13416 13425 25868 25868 0.06175842553489019 LFHMCWEIS 9 Unmodified _LFHMCWEIS_ 0 0 0 REV__L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|70|2|anti-sense REV__L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_3 4 583.2490234375 2 583.262087 1164.50962 NaN NaN NaN NaN NaN NaN NaN 73.567 1 76.804 76.304 77.304 3.2363 0 0 0 0.34056 1 18176 18176 8.5933 1.304 1 + 21613 29074 13417 13426 25869 25869 -0.06605245680589178 LFHMHFEK 8 Unmodified _LFHMHFEK_ 0 0 0 L1M5_dup36568|chr11:17304491-17305041:+|1.0161608495963643|0.0194791654074672|5.71|151.0|31|2|anti-sense L1M5_dup36568|chr11:17304491-17305041:+|1.0161608495963643|0.0194791654074672|5.71|151.0|31|2|anti-sense L1M5_dup36568|chr11:17304491-17305041:+|1.0161608495963643|0.0194791654074672|5.71|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 544.7706298828125 2 544.770937 1087.52732 NaN NaN NaN NaN NaN NaN NaN 85.426 1 89.017 88.517 89.517 3.5914 0 0 0 0.40625 1 21332 21332 2.3027 0 1 21614 9149 13418 13427 25870 25870 -0.012941623634333155 LFHPVSLYY 9 Unmodified _LFHPVSLYY_ 0 0 0 REV__L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|177|2|anti-sense REV__L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|177|2|anti-sense MSMS UPN47_class_I_Rep_3 4 569.7992553710938 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.798 1 55.993 55.493 56.493 3.1948 0 0 0 0.35339 1 11858 11858 7.9102 1.7044 1 + 21615 26165 13419 13428 25871 25871 0.022592174826968403 LFHPVVRK 8 Unmodified _LFHPVVRK_ 0 0 0 REV__MSTB2_dup180|chr2:99633506-99633909:+|1.1607477345290338|0.0269545842601136|5.43|149.0|3|1|sense REV__MSTB2_dup180|chr2:99633506-99633909:+|1.1607477345290338|0.0269545842601136|5.43|149.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 498.30908203125 2 498.311087 994.60762 0.17536 8.7382E-05 -4.272 -0.0021288 -4.0967 -0.0020414 498.3085095219208 45.161 0.12538 48.798 48.746 48.871 3.6372 10 8 2 0 0 0 0.82752 1 8622 8622 2.5775 0.51773 1 44555 + 21616 31913 13420 13429 25872 25872 0.11010067021948089 LFHQGLLYAG 10 Unmodified _LFHQGLLYAG_ 0 0 0 REV__THE1D-int_dup308|chr2:186160152-186161777:+|1.004095772139062|0.1731987395569895|2.54|149.0|44|3|sense REV__THE1D-int_dup308|chr2:186160152-186161777:+|1.004095772139062|0.1731987395569895|2.54|149.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.8026123046875 2 559.803291 1117.59203 0.49889 0.00027928 -1.0052 -0.0005627 -0.50627 -0.00028341 559.8025804162951 68.908 0.76141 72.416 71.909 72.671 3.5083 96 57 2 0 0 0 0.53188 1 15861 15861 7.9102 0 1 146530 + 21617 32310 13421 13430 25873 25873 0.03793735714225477 LFHRSPLL 8 Unmodified _LFHRSPLL_ 0 0 0 REV__LTR16A1_dup1598|chr10:87277937-87278337:-|1.0650363314722664|0.0439145368874417|4.6|150.0|23|2|anti-sense REV__LTR16A1_dup1598|chr10:87277937-87278337:-|1.0650363314722664|0.0439145368874417|4.6|150.0|23|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.79620361328125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.346 1 52.87 52.37 53.37 3.5246 0 0 0 0.40404 1 9962 9962 5.2307 0 1 + 21618 30849 13422 13431 25874 25874 0.08446074267999393 LFHRSPLL 8 Unmodified _LFHRSPLL_ 0 0 0 REV__LTR16A1_dup1598|chr10:87277937-87278337:-|1.0650363314722664|0.0439145368874417|4.6|150.0|23|2|anti-sense REV__LTR16A1_dup1598|chr10:87277937-87278337:-|1.0650363314722664|0.0439145368874417|4.6|150.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7958679199219 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.249 1 52.878 52.378 53.378 3.6291 0 0 0 0.39624 1 9867 9867 9.3474 0 1 + 21619 30849 13422 13431 25875 25875 0.08446074267999393 LFHSIAASL 9 Unmodified _LFHSIAASL_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MULTI-MSMS UPN47_class_I_Rep_3 4 479.771240234375 2 479.77146 957.528367 -0.42778 -0.00020524 -0.19806 -9.5024E-05 -0.62584 -0.00030026 479.77125600551364 38.087 0.37489 41.329 41.006 41.381 3.2414 42 27 2 0 0 0 0.41259 1 7351 7351 7.2892 0 1 57985 + 21620 19011 13423 13432 25876 25876 0.04790375277127623 LFHSIAASL 9 Unmodified _LFHSIAASL_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 479.77146 957.528367 -0.29431 -0.0001412 -0.75987 -0.00036456 -1.0542 -0.00050576 479.770923062729 37.414 0.47976 41.08 40.847 41.327 3.6652 -0.12463 -0.00026774 NaN 7.2892 47 34 2 NaN NaN NaN NaN 0 NaN NaN 0 57619 + 21621 19011 13423 13432 0.04790375277127623 LFHSIAASL 9 Unmodified _LFHSIAASL_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 479.77146 957.528367 -0.42778 -0.00020524 -0.19806 -9.5024E-05 -0.62584 -0.00030026 479.77125600551364 38.087 0.37489 41.329 41.006 41.381 3.2414 0.12463 0.00027134 NaN 7.2892 42 27 2 NaN NaN NaN NaN 0 NaN NaN 0 57985 + 21622 19011 13423 13432 0.04790375277127623 LFHTNLFDR 9 Unmodified _LFHTNLFDR_ 0 0 0 REV__MER50-int_dup399|chr13:79393528-79394632:+|1.8536693790182013|0.0468435950192108|5.31|151.0|12|2|sense REV__MER50-int_dup399|chr13:79393528-79394632:+|1.8536693790182013|0.0468435950192108|5.31|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.3054809570312 2 581.803823 1161.59309 0.51956 0.00030228 0.61457 0.00035756 1.1341 0.00065984 582.3057776401859 57.985 0.63538 61.276 61.034 61.669 3.2912 102 44 3 0 0 0 0.46434 1 13332 13332 4.3292 0 1 149030 + 21623 31380 13424 13433 25877 25877 0.01875950083126554 LFIATKQDY 9 Unmodified _LFIATKQDY_ 0 0 0 ENSG00000115008|ENST00000263339|IL1A ENSG00000115008|ENST00000263339|IL1A ENSG00000115008|ENST00000263339|IL1A MULTI-MSMS UPN47_class_I_Rep_1 2 549.7972412109375 2 549.795132 1097.57571 0.4372 0.00024037 0.18451 0.00010144 0.6217 0.00034181 549.7951628947446 58.89 0.76 62.307 61.994 62.754 3.4171 131 52 3 0 0 0 0.30667 1 13759 13759 13.508 4.1604 1 567180 21624 2103 13425 13434 25878 25878 0.03082609757461796 LFICHDLTL 9 Unmodified _LFICHDLTL_ 0 0 0 REV__L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|35|1|anti-sense REV__L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|35|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 537.2689819335938 2 537.786253 1073.55795 0.35891 0.00019302 1.3092 0.00070405 1.6681 0.00089707 537.7878265610385 50.413 0.3693 53.938 53.713 54.082 3.5246 31 23 2 0 0 0 0.10699 1 10289 10289 15.847 0 1 103900 + 21625 24342 13426 13435 25879 25879 0.024115712309594528 LFICHDLTL 9 Unmodified _LFICHDLTL_ 0 0 0 REV__L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|35|1|anti-sense REV__L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|35|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 537.2689819335938 2 537.786253 1073.55795 0.46461 0.00024986 2.0206 0.0010866 2.4852 0.0013365 537.7874873808031 50.385 0.29548 54.006 53.844 54.139 3.621 21 15 2 0 0 0 0.10699 1 10176 10176 15.847 5.0233 1 94801 + 21626 24342 13426 13435 25880 25880 0.024115712309594528 LFIDHYYS 8 Unmodified _LFIDHYYS_ 0 0 0 REV__Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|108|1|anti-sense REV__Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|108|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.25341796875 2 529.2531 1056.49165 -0.19115 -0.00010117 -0.51647 -0.00027334 -0.70762 -0.00037451 529.2528383183719 28.731 0.66982 32.229 31.974 32.643 3.4986 112 53 3 0 0 0 0.82752 1 4443 4443 4.756 0 1 167630 + 21627 32666 13427 13436 25881 25881 -0.03433921339455992 LFIFHNYA 8 Unmodified _LFIFHNYA_ 0 0 0 Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|14|2|sense Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|14|2|sense Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 512.7639770507812 2 512.766178 1023.5178 0.27837 0.00014274 -3.613 -0.0018526 -3.3346 -0.0017099 512.7638531933211 72.296 0.071144 75.77 75.727 75.798 3.4732 8 6 2 0 0 0 0.82752 1 16965 16965 0.79363 0 1 23688 21628 500 13428 13437 25882 25882 0.006983926227007942 LFIFPFRPY 9 Unmodified _LFIFPFRPY_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_2 6 600.3345336914062 2 600.334227 1198.6539 NaN NaN NaN NaN NaN NaN NaN 65.889 1 69.376 68.876 69.876 3.4866 0 0 0 0.39428 1 15011 15011 2.0598 0 1 + 21629 20199 13429 13438 25883 25883 0.06252087133384521 LFIFREVLFV 10 Unmodified _LFIFREVLFV_ 0 0 0 REV__L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|33|1|anti-sense REV__L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_3 4 641.882568359375 2 641.881542 1281.74853 NaN NaN NaN NaN NaN NaN NaN 89.401 1 92.795 92.295 93.295 3.3931 0 0 0 0.53105 1 22415 22415 3.2813 0.54611 1 + 21630 29197 13430 13439 25884 25884 0.1189260088467563 LFIGDVSFIS 10 Unmodified _LFIGDVSFIS_ 0 0 0 L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|60|1|anti-sense L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|60|1|anti-sense L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_2 3 549.28466796875 2 549.297507 1096.58046 NaN NaN NaN NaN NaN NaN NaN 59.525 1 62.798 62.298 63.298 3.2731 0 0 0 0.53105 1 13862 13862 10.824 0 1 21631 13170 13431 13440 25885 25885 0.03603493900254762 LFIHFTADEY 10 Unmodified _LFIHFTADEY_ 0 0 0 L1ME3_dup8524|chr20:3948565-3949085:-|1.3917030102296912|0.016900294858727|6.36|151.0|26|1|anti-sense L1ME3_dup8524|chr20:3948565-3949085:-|1.3917030102296912|0.016900294858727|6.36|151.0|26|1|anti-sense L1ME3_dup8524|chr20:3948565-3949085:-|1.3917030102296912|0.016900294858727|6.36|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 628.3042602539062 2 628.303321 1254.59209 0.46298 0.00029089 -0.12871 -8.0871E-05 0.33426 0.00021002 628.3032599077679 60.786 0.57771 64.168 63.864 64.442 3.3815 97 54 2 0 0 0 0.56033 1 14255 14255 3.5965 0 1 182790 21632 12612 13432 13441 25886 25886 -0.0250230907643072 LFIHHKVK 8 Unmodified _LFIHHKVK_ 0 0 0 REV__L1MA5A_dup1894|chr9:92981846-92982542:-|1.658714551052665|0.0082162955207885|7.66|151.0|21|3|sense REV__L1MA5A_dup1894|chr9:92981846-92982542:-|1.658714551052665|0.0082162955207885|7.66|151.0|21|3|sense MSMS UPN48_class_I_Rep_2 6 511.31817626953125 2 511.318912 1020.62327 NaN NaN NaN NaN NaN NaN NaN 72.767 1 76.331 75.831 76.831 3.5645 0 0 0 0.40738 1 17051 17051 0.79363 0 1 + 21633 25412 13433 13442 25887 25887 0.11378353538987085 LFIHKKQL 8 Unmodified _LFIHKKQL_ 0 0 0 Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|98|2|anti-sense;Tigger1_dup7710|chrX:134402647-134405032:+|1.0198346954577744|0.1392758092483212|2.87|151.0|81|1|anti-sense;Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|131|3|anti-sense;Tigger1_dup10671|chr16:75354913-75355576:-|1.050685510305029|0.0212772805180186|5.63|150.0|42|2|anti-sense;Tigger1_dup2158|chr3:37394566-37395981:+|1.3128678976606742|0.2140127243868888|2.62|151.0|81|2|anti-sense;Tigger1_dup10451|chr15:72765449-72765979:+|1.5349343380672416|0.0367811660498981|5.38|151.0|27|2|anti-sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|98|2|anti-sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|98|2|anti-sense MSMS UPN48_class_I_Rep_3 7 513.7664794921875 2 513.826569 1025.63859 NaN NaN NaN NaN NaN NaN NaN 59.859 1 63.376 62.876 63.876 3.5169 0 0 0 0.39624 1 13101 13101 9.3474 0 1 21634 32985 13434 13443 25888 25888 0.12679220336167418 LFIIASRWK 9 Unmodified _LFIIASRWK_ 0 0 0 L1MB8_dup5611|chr6:57074875-57075871:-|2.149878653072664|0.1997256634155683|3.43|151.0|35|3|sense L1MB8_dup5611|chr6:57074875-57075871:-|2.149878653072664|0.1997256634155683|3.43|151.0|35|3|sense L1MB8_dup5611|chr6:57074875-57075871:-|2.149878653072664|0.1997256634155683|3.43|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 567.3638305664062 2 567.345126 1132.6757 NaN NaN NaN NaN NaN NaN NaN 45.49 1 49.19 48.69 49.69 3.6999 0 0 0 0.39518 1 9560 9560 1.8442 0 1 21635 11018 13435 13444 25889 25889 0.1146689188194614 LFIIFKIWK 9 Unmodified _LFIIFKIWK_ 0 0 0 L1MC1_dup12275|chr19:12175496-12176188:-|1.41344836976453|0.0221858518189195|5.99|151.0|19|3|sense L1MC1_dup12275|chr19:12175496-12176188:-|1.41344836976453|0.0221858518189195|5.99|151.0|19|3|sense L1MC1_dup12275|chr19:12175496-12176188:-|1.41344836976453|0.0221858518189195|5.99|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 604.3837890625 2 604.38372 1206.75289 NaN NaN NaN NaN NaN NaN NaN 90.763 1 94.453 93.953 94.953 3.6899 0 0 0 0.4007 1 22667 22667 0.52476 0 1 21636 11111 13436 13445 25890 25890 0.15778110098244724 LFIILTIAP 9 Unmodified _LFIILTIAP_ 0 0 0 REV__MLT1J_dup6102|chr6:109376243-109376681:+|2.867367285225701|0.4087729122925356|2.81|151.0|25|2|anti-sense REV__MLT1J_dup6102|chr6:109376243-109376681:+|2.867367285225701|0.4087729122925356|2.81|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_2 6 500.823486328125 2 500.825704 999.636855 NaN NaN NaN NaN NaN NaN NaN 43.701 1 47.463 46.963 47.963 3.7617 0 0 0 0.2088 1 8244 8244 15.847 0 1 + 21637 31782 13437 13446 25891 25891 0.13702166527548343 LFIKCVLPLLS 11 Unmodified _LFIKCVLPLLS_ 0 0 0 L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|91|2|anti-sense L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|91|2|anti-sense L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|91|2|anti-sense MSMS UPN47_class_I_Rep_1 2 623.3870849609375 2 623.385603 1244.75665 NaN NaN NaN NaN NaN NaN NaN 109.1 1 112.71 112.21 113.21 3.6046 0 0 0 0.37149 1 26883 26883 7.609 1.4032 1 21638 12586 13438 13447 25892 25892 0.14406411809841302 LFIKLILHLV 10 Unmodified _LFIKLILHLV_ 0 0 0 L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|198|1|anti-sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|198|1|anti-sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|198|1|anti-sense MSMS UPN48_class_I_Rep_3 7 604.912353515625 2 604.910102 1207.80565 NaN NaN NaN NaN NaN NaN NaN 71.676 1 75.203 74.703 75.703 3.5266 0 0 0 0.53105 1 16661 16661 0.45834 0 1 21639 13514 13439 13448 25893 25893 0.21006068161091207 LFILCKKRL 9 Unmodified _LFILCKKRL_ 0 0 0 REV__L1ME4b_dup15004|chr12:57708641-57709585:-|1.0766333988326726|0.0998943385899288|3.43|151.0|45|1|anti-sense REV__L1ME4b_dup15004|chr12:57708641-57709585:-|1.0766333988326726|0.0998943385899288|3.43|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_1 5 567.313232421875 2 567.365004 1132.71546 NaN NaN NaN NaN NaN NaN NaN 44.236 1 47.749 47.249 48.249 3.5132 0 0 0 0.40038 1 8396 8396 0.6015 0 1 + 21640 28259 13440 13449 25894 25894 0.15440695561005668 LFILFLIIVYV 11 Unmodified _LFILFLIIVYV_ 0 0 0 REV__L1ME3B_dup6564|chr14:105915756-105916130:-|2.66566613758305|0.0257908563146511|6.69|144.0|17|1|anti-sense REV__L1ME3B_dup6564|chr14:105915756-105916130:-|2.66566613758305|0.0257908563146511|6.69|144.0|17|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 451.6240539550781 3 451.624587 1351.85193 0.0059608 2.692E-06 -0.47114 -0.00021278 -0.46518 -0.00021008 451.624278297068 46.658 1.0287 50.177 49.802 50.831 3.5192 83 64 2 0 0 0 0.68024 1 9198 9198 0.50596 0.051438 1 253900 + 21641 28077 13441 13450 25895 25895 0.19008088272494206 LFILFLIIVYV 11 Unmodified _LFILFLIIVYV_ 0 0 0 REV__L1ME3B_dup6564|chr14:105915756-105916130:-|2.66566613758305|0.0257908563146511|6.69|144.0|17|1|anti-sense REV__L1ME3B_dup6564|chr14:105915756-105916130:-|2.66566613758305|0.0257908563146511|6.69|144.0|17|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 451.624587 1351.85193 0.063713 2.8774E-05 -0.44773 -0.0002022 -0.38401 -0.00017343 451.6241729037036 46.16 0.29676 49.918 49.863 50.16 3.7579 -0.15815 -7.183E-05 NaN 0.50596 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 54127 + 21642 28077 13441 13450 0.19008088272494206 LFINQSTIY 9 Unmodified _LFINQSTIY_ 0 0 0 REV__L1MEc_dup10762|chrX:44922809-44923534:-|1.5913865671590328|0.0111774856918728|7.15|151.0|22|3|sense REV__L1MEc_dup10762|chrX:44922809-44923534:-|1.5913865671590328|0.0111774856918728|7.15|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.7960205078125 2 549.795132 1097.57571 0.34447 0.00018939 0.14996 8.2446E-05 0.49443 0.00027184 549.7951097938491 59.365 1.0716 62.53 62.035 63.107 3.1651 131 68 3 0 0 0 0.21334 1 13927 13927 19.439 10.092 1 404390 + 21643 28348 13442 13451 25896 25896 0.030826097574845335 LFIPFTHTF 9 Unmodified _LFIPFTHTF_ 0 0 0 REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|58|2|anti-sense REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_2 6 561.8046875 2 561.80276 1121.59097 NaN NaN NaN NaN NaN NaN NaN 74.497 1 78.087 77.587 78.587 3.59 0 0 0 0.39518 1 17534 17534 1.8442 0 1 + 21644 28760 13443 13452 25897 25897 0.03503521345305671 LFIQKKQQ 8 Unmodified _LFIQKKQQ_ 0 0 0 REV__nc|ENSG00000170959|M0R2J8|DCDC1 REV__nc|ENSG00000170959|M0R2J8|DCDC1 MULTI-MSMS UPN47_class_I_Rep_1 2 516.7960815429688 2 516.813659 1031.61277 0.30245 0.00015631 -0.51085 -0.00026401 -0.20841 -0.00010771 516.8133515228745 59.688 0.7166 63.086 62.784 63.501 3.3982 62 44 2 0 0 0 0.82752 1 13993 13993 13.508 0 1 147680 + 21645 20393 13444 13453 25898 25898 0.09822326093899392 LFIQKKQQ 8 Unmodified _LFIQKKQQ_ 0 0 0 REV__nc|ENSG00000170959|M0R2J8|DCDC1 REV__nc|ENSG00000170959|M0R2J8|DCDC1 MULTI-SECPEP UPN47_class_I_Rep_1 2 516.7955932617188 2 516.813659 1031.61277 0.30044 0.00015527 -0.076622 -3.9599E-05 0.22382 0.00011567 516.8134056958665 60.275 0.28819 63.673 63.576 63.865 3.3982 31 28 2 0 0 0 0.72333 1 14030 14030 13.508 0 1 71974 + 21646 20393 13444 13453 25899 25899 0.09822326093899392 LFIRARLL 8 Unmodified _LFIRARLL_ 0 0 0 REV__L1MC4_dup20568|chr15:89862154-89862570:+|1.492297273120929|0.0116122047918728|7.01|151.0|31|3|anti-sense REV__L1MC4_dup20568|chr15:89862154-89862570:+|1.492297273120929|0.0116122047918728|7.01|151.0|31|3|anti-sense MSMS UPN47_class_I_Rep_1 2 501.3367004394531 2 501.334562 1000.65457 NaN NaN NaN NaN NaN NaN NaN 101.52 1 105.31 104.81 105.81 3.7942 0 0 0 0.40625 1 25030 25030 2.3027 0 1 + 21647 26866 13445 13454 25900 25900 0.154269265730818 LFIYYYRV 8 Unmodified _LFIYYYRV_ 0 0 0 L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|179|1|anti-sense L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|179|1|anti-sense L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|179|1|anti-sense MSMS UPN46_class_I_Rep_3 1 568.8092651367188 2 568.810585 1135.60662 NaN NaN NaN NaN NaN NaN NaN 40.757 1 40.757 40.257 41.257 0 0 0 0 0.40404 1 7933 7933 5.2307 0 1 21648 14623 13446 13455 25901 25901 0.04423807862349349 LFKACCRTGY 10 Unmodified _LFKACCRTGY_ 0 0 0 HERVH-int_dup4972|chr14:50893613-50896276:+|1.7611204987424525|0.1459403459244806|3.59|151.0|98|2|anti-sense HERVH-int_dup4972|chr14:50893613-50896276:+|1.7611204987424525|0.1459403459244806|3.59|151.0|98|2|anti-sense HERVH-int_dup4972|chr14:50893613-50896276:+|1.7611204987424525|0.1459403459244806|3.59|151.0|98|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.2811889648438 2 581.280812 1160.54707 0.4563 0.00026524 0.61105 0.00035519 1.0673 0.00062043 581.2811745847922 73.674 0.74014 76.91 76.631 77.371 3.2363 149 73 3 0 0 0 0.52562 1 18194 18194 8.7454 0.83525 1 251950 21649 8153 13447 13456 25902 25902 -0.02678154414979872 LFKAQPYHH 9 Unmodified _LFKAQPYHH_ 0 0 0 REV__ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|85|3|sense REV__ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|85|3|sense MSMS UPN47_class_I_Rep_2 3 570.8018188476562 2 570.801083 1139.58761 NaN NaN NaN NaN NaN NaN NaN 44.983 1 48.338 47.838 48.838 3.3556 0 0 0 0.38299 1 9435 9435 4.756 1.1595 1 + 21650 23263 13448 13457 25903 25903 0.023402712913139112 LFKCINRLC 9 Unmodified _LFKCINRLC_ 0 0 0 REV__ENST00000413171.6_1_7:872152-892516:+|nuORF REV__ENST00000413171.6_1_7:872152-892516:+|nuORF MSMS UPN48_class_I_Rep_1 5 555.3031005859375 2 555.301547 1108.58854 NaN NaN NaN NaN NaN NaN NaN 59.45 1 62.93 62.43 63.43 3.4801 0 0 0 0.38478 1 13064 13064 4.3292 2.0265 1 + 21651 22199 13449 13458 25904 25904 0.03859026344366612 LFKCINRLC 9 Unmodified _LFKCINRLC_ 0 0 0 REV__ENST00000413171.6_1_7:872152-892516:+|nuORF REV__ENST00000413171.6_1_7:872152-892516:+|nuORF MSMS UPN48_class_I_Rep_2 6 555.3026123046875 2 555.301547 1108.58854 NaN NaN NaN NaN NaN NaN NaN 59.438 1 62.925 62.425 63.425 3.4868 0 0 0 0.35339 1 13039 13039 7.9102 3.1541 1 + 21652 22199 13449 13458 25905 25905 0.03859026344366612 LFKCINRLC 9 Unmodified _LFKCINRLC_ 0 0 0 REV__ENST00000413171.6_1_7:872152-892516:+|nuORF REV__ENST00000413171.6_1_7:872152-892516:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 555.3018798828125 2 555.301547 1108.58854 0.36161 0.0002008 2.2415 0.0012447 2.6032 0.0014455 555.3030500351609 59.273 0.49242 62.797 62.412 62.905 3.5231 35 32 2 0 0 0 0.45688 1 12912 12912 4.756 0.42677 1 93209 + 21653 22199 13449 13458 25906 25906 0.03859026344366612 LFKCINRLC 9 Unmodified _LFKCINRLC_ 0 0 0 REV__ENST00000413171.6_1_7:872152-892516:+|nuORF REV__ENST00000413171.6_1_7:872152-892516:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 555.301547 1108.58854 0.63043 0.00035008 2.5087 0.0013931 3.1392 0.0017432 555.3029510158633 59.554 0.14195 63.034 62.988 63.13 3.4801 0.11861 0.00022717 NaN 4.756 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 49132 + 21654 22199 13449 13458 0.03859026344366612 LFKCLSNIY 9 Unmodified _LFKCLSNIY_ 0 0 0 L1MD2_dup10609|chr22:23811057-23812173:+|2.7107686165869747|0.1826984797309743|3.89|151.0|14|2|sense L1MD2_dup10609|chr22:23811057-23812173:+|2.7107686165869747|0.1826984797309743|3.89|151.0|14|2|sense L1MD2_dup10609|chr22:23811057-23812173:+|2.7107686165869747|0.1826984797309743|3.89|151.0|14|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 550.7402954101562 2 550.794078 1099.5736 0.35461 0.00019531 0.70531 0.00038848 1.0599 0.0005838 550.7943546270466 59.909 0.23982 63.074 62.925 63.165 3.1651 20 15 2 0 0 0 0.11873 1 14006 14006 8.5933 0 1 110390 21655 11981 13450 13459 25907 25907 0.027798577480098174 LFKEVKDLI 9 Unmodified _LFKEVKDLI_ 0 0 0 REV__L1ME3B_dup6779|chr15:71832257-71834490:+|1.1079403184936376|0.1773354737865108|2.64|150.0|33|1|sense REV__L1ME3B_dup6779|chr15:71832257-71834490:+|1.1079403184936376|0.1773354737865108|2.64|150.0|33|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.8364868164062 2 552.8368 1103.65905 0.43077 0.00023815 -0.49581 -0.0002741 -0.065031 -3.5952E-05 552.8363992803464 61.057 0.9459 64.439 64.074 65.02 3.3815 165 74 3 0 0 0 0.15122 2 14195 14195;14386 25.399 0 1 419350 + 21656 28078 13451 13460 25908;25909 25908 0.11136346205330483 LFKEVKDLI 9 Unmodified _LFKEVKDLI_ 0 0 0 REV__L1ME3B_dup6779|chr15:71832257-71834490:+|1.1079403184936376|0.1773354737865108|2.64|150.0|33|1|sense REV__L1ME3B_dup6779|chr15:71832257-71834490:+|1.1079403184936376|0.1773354737865108|2.64|150.0|33|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.836669921875 2 552.8368 1103.65905 0.45741 0.00025287 -0.47943 -0.00026505 -0.022021 -1.2174E-05 552.8364651979159 61.354 1.0369 64.62 64.292 65.329 3.2654 145 71 3 0 0 0 0.11683 2 14364 14364;14494 30.637 1.555 1 481630 + 21657 28078 13451 13460 25910;25911 25910 0.11136346205330483 LFKEVKDLI 9 Unmodified _LFKEVKDLI_ 0 0 0 REV__L1ME3B_dup6779|chr15:71832257-71834490:+|1.1079403184936376|0.1773354737865108|2.64|150.0|33|1|sense REV__L1ME3B_dup6779|chr15:71832257-71834490:+|1.1079403184936376|0.1773354737865108|2.64|150.0|33|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.8362426757812 2 552.8368 1103.65905 0.38424 0.00021242 -0.25386 -0.00014034 0.13038 7.2081E-05 552.8365510394389 61.495 0.94102 64.662 64.297 65.238 3.1667 154 71 3 0 0 0 0.21527 2 14408 14408;14570 19.257 0 1 410410 + 21658 28078 13451 13460 25912;25913 25912 0.11136346205330483 LFKGVLFLG 9 Unmodified _LFKGVLFLG_ 0 0 0 REV__L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|112|2|anti-sense REV__L1MB4_dup7394|chr16:47341404-47343391:+|1.2189915904506683|0.0308711961040606|5.3|151.0|112|2|anti-sense MSMS UPN46_class_I_Rep_3 1 497.265380859375 2 497.310221 992.605889 NaN NaN NaN NaN NaN NaN NaN 86.154 1 86.154 85.654 86.654 0 0 0 0 0.38478 1 20591 20591 4.3292 0 1 + 21659 26013 13452 13461 25914 25914 0.1092901321330828 LFKIMIWLN 9 Unmodified _LFKIMIWLN_ 0 0 0 HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|65|3|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|65|3|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|65|3|sense MSMS UPN47_class_I_Rep_2 3 589.3433837890625 2 589.343738 1176.67292 NaN NaN NaN NaN NaN NaN NaN 84.587 1 88.01 87.51 88.51 3.4232 0 0 0 0.39518 1 21088 21088 1.8442 0.19162 1 21660 8337 13453 13462 25915 25915 0.09165300432778167 LFKKDVVPS 9 Unmodified _LFKKDVVPS_ 0 0 0 REV__nc|ENSG00000164338|Q8TED0-2|UTP15 REV__nc|ENSG00000164338|Q8TED0-2|UTP15 MSMS UPN47_class_I_Rep_3 4 516.8065185546875 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 48.05 1 51.29 50.79 51.79 3.2405 0 0 0 0.38639 1 10412 10412 3.9444 0 1 + 21661 20058 13454 13463 25916 25916 0.08699503999741864 LFKLLYLFH 9 Unmodified _LFKLLYLFH_ 0 0 0 REV__L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|110|1|anti-sense REV__L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|110|1|anti-sense MSMS UPN48_class_I_Rep_1 5 597.3575439453125 2 597.357702 1192.70085 NaN NaN NaN NaN NaN NaN NaN 95.722 1 99.334 98.834 99.834 3.6124 0 0 0 0.40038 1 23059 23059 0.6015 0 1 + 21662 28669 13455 13464 25917 25917 0.11220946684488808 LFKNFKSYF 9 Unmodified _LFKNFKSYF_ 0 0 0 L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.3206176757812 2 597.321317 1192.62808 0.45754 0.0002733 0.25708 0.00015356 0.71462 0.00042686 597.3212855298709 71.525 0.20238 74.991 74.889 75.091 3.466 23 16 2 0 0 0 0.23293 1 16749 16749 18.146 0 1 103790 21663 12999 13456 13465 25918 25918 0.03947192891064333 LFKNFKSYF 9 Unmodified _LFKNFKSYF_ 0 0 0 L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_1 5 597.3226928710938 2 597.321317 1192.62808 NaN NaN NaN NaN NaN NaN NaN 71.373 1 74.839 74.339 75.339 3.466 0 0 0 0.10315 1 16683 16683 24.021 0 1 21664 12999 13456 13465 25919 25919 0.03947192891064333 LFKNFKSYF 9 Unmodified _LFKNFKSYF_ 0 0 0 L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.3216552734375 2 597.321317 1192.62808 0.47691 0.00028487 -0.3815 -0.00022788 0.095416 5.6994E-05 597.3212571734592 71.349 0.52464 74.9 74.637 75.162 3.5505 58 52 2 0 0 0 0.38714 1 16582 16582 8.7454 0 1 156220 21665 12999 13456 13465 25920 25920 0.03947192891064333 LFKNFKSYF 9 Unmodified _LFKNFKSYF_ 0 0 0 L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_3 7 597.3196411132812 2 597.321317 1192.62808 NaN NaN NaN NaN NaN NaN NaN 71.184 1 74.703 74.203 75.203 3.5185 0 0 0 0.25702 1 16512 16512 13.042 0 1 21666 12999 13456 13465 25921 25921 0.03947192891064333 LFKNFKSYF 9 Unmodified _LFKNFKSYF_ 0 0 0 L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense L1MEc_dup10760|chrX:44919910-44920426:-|1.1628242794495929|0.0058899300365262|7.63|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_3 7 597.3214721679688 2 597.321317 1192.62808 NaN NaN NaN NaN NaN NaN NaN 71.329 1 74.848 74.348 75.348 3.5185 0 0 0 0.17222 1 16556 16556 18.146 0 1 21667 12999 13456 13465 25922 25922 0.03947192891064333 LFKNVYVPL 9 Unmodified _LFKNVYVPL_ 0 0 0 REV__MER58A_dup6659|chr9:40091702-40091875:+|1.0980280721028215|0.2335153039438968|2.23|79.0|6|3|sense REV__MER58A_dup6659|chr9:40091702-40091875:+|1.0980280721028215|0.2335153039438968|2.23|79.0|6|3|sense MSMS UPN48_class_I_Rep_3 7 546.826904296875 2 546.826235 1091.63792 NaN NaN NaN NaN NaN NaN NaN 73.055 1 76.593 76.093 77.093 3.5373 0 0 0 0.39518 1 17072 17072 1.8442 0 1 + 21668 31462 13457 13466 25923 25923 0.09576380896464798 LFKQDTNL 8 Unmodified _LFKQDTNL_ 0 0 0 ENST00000476668.1_1_3:169775750-169780457:+|nuORF ENST00000476668.1_1_3:169775750-169780457:+|nuORF ENST00000476668.1_1_3:169775750-169780457:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 489.7655029296875 2 489.766374 977.518196 -0.28377 -0.00013898 -1.1366 -0.00055666 -1.4204 -0.00069565 489.7658413783169 34.424 0.54499 38.11 37.841 38.386 3.6859 55 42 2 0 0 0 0.82752 1 6199 6199 25.399 0 1 141690 21669 6971 13458 13467 25924 25924 0.028537675518805372 LFKQDTNL 8 Unmodified _LFKQDTNL_ 0 0 0 ENST00000476668.1_1_3:169775750-169780457:+|nuORF ENST00000476668.1_1_3:169775750-169780457:+|nuORF ENST00000476668.1_1_3:169775750-169780457:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 489.7653503417969 2 489.766374 977.518196 -0.11643 -5.7025E-05 -1.4878 -0.00072865 -1.6042 -0.00078568 489.76553306313764 34.588 0.56686 38.013 37.787 38.354 3.4253 63 38 2 0 0 0 0.82752 1 6304 6304 28.487 0 1 138650 21670 6971 13458 13467 25925 25925 0.028537675518805372 LFKQDTNL 8 Unmodified _LFKQDTNL_ 0 0 0 ENST00000476668.1_1_3:169775750-169780457:+|nuORF ENST00000476668.1_1_3:169775750-169780457:+|nuORF ENST00000476668.1_1_3:169775750-169780457:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 489.76483154296875 2 489.766374 977.518196 -0.36817 -0.00018032 -1.168 -0.00057205 -1.5362 -0.00075237 489.7657528212215 34.788 0.56996 38.052 37.821 38.391 3.2639 79 46 2 0 0 0 0.82752 2 6336 6336;6396 21.747 0 1 136190 21671 6971 13458 13467 25926;25927 25926 0.028537675518805372 LFKQKQGT 8 Unmodified _LFKQKQGT_ 0 0 0 REV__Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|67|3|sense REV__Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|67|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 475.2599182128906 2 475.276909 948.539266 -0.27844 -0.00013234 0.34915 0.00016594 0.070705 3.3604E-05 475.27661486926473 39.356 0.63668 42.735 42.359 42.996 3.3785 45 34 2 0 0 0 0.82752 1 7747 7747 5.2307 0 1 58483 + 21672 32362 13459 13468 25928 25928 0.06293777651421806 LFKRRVVRR 9 Unmodified _LFKRRVVRR_ 0 0 0 ENSG00000099999|ENST00000382363|RNF215 ENSG00000099999|ENST00000382363|RNF215 ENSG00000099999|ENST00000382363|RNF215 MSMS UPN48_class_I_Rep_2 6 615.4071044921875 2 615.406915 1228.79928 NaN NaN NaN NaN NaN NaN NaN 74.538 1 78.128 77.628 78.628 3.59 0 0 0 0.39428 1 17546 17546 2.0598 0 1 21673 1461 13460 13469 25929 25929 0.19402987772900815 LFKTGPSIL 9 Unmodified _LFKTGPSIL_ 0 0 0 REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|325|2|anti-sense REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|325|2|anti-sense MSMS UPN48_class_I_Rep_3 7 488.2707214355469 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 46.952 1 50.588 50.088 51.088 3.6363 0 0 0 0.39518 1 9163 9163 1.8442 0 1 + 21674 30472 13461 13470 25930 25930 0.0917611897103825 LFKVVMHHP 9 Unmodified _LFKVVMHHP_ 0 0 0 REV__L1MDa_dup2964|chr7:139908384-139909253:-|1.297011848125412|0.0464419967845871|4.8|151.0|36|1|anti-sense REV__L1MDa_dup2964|chr7:139908384-139909253:-|1.297011848125412|0.0464419967845871|4.8|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_2 6 554.3126220703125 2 554.310229 1106.60591 NaN NaN NaN NaN NaN NaN NaN 38.052 1 41.768 41.268 42.268 3.7164 0 0 0 0.38478 1 6583 6583 4.3292 0.38484 1 + 21675 27518 13462 13471 25931 25931 0.05686689941694567 LFKVVMHHP 9 Unmodified _LFKVVMHHP_ 0 0 0 REV__L1MDa_dup2964|chr7:139908384-139909253:-|1.297011848125412|0.0464419967845871|4.8|151.0|36|1|anti-sense REV__L1MDa_dup2964|chr7:139908384-139909253:-|1.297011848125412|0.0464419967845871|4.8|151.0|36|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.3119506835938 2 554.310229 1106.60591 0.30124 0.00016698 3.3148 0.0018374 3.6161 0.0020044 554.3121807169276 37.944 0.13264 41.604 41.546 41.679 3.6595 13 11 2 0 0 0 0.48846 1 6474 6474 1.8442 0.19162 1 65460 + 21676 27518 13462 13471 25932 25932 0.05686689941694567 LFLAFNML 8 Unmodified _LFLAFNML_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS UPN48_class_I_Rep_1 5 484.7672119140625 2 484.767332 967.52011 NaN NaN NaN NaN NaN NaN NaN 93.704 1 97.325 96.825 97.825 3.6208 0 0 0 0.40738 1 22527 22527 0.79363 0 1 21677 3476 13463 13472 25933 25933 0.0350510503615169 LFLAFNML 8 Unmodified _LFLAFNML_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS UPN48_class_I_Rep_3 7 484.7673645019531 2 484.767332 967.52011 NaN NaN NaN NaN NaN NaN NaN 93.453 1 97.344 96.844 97.844 3.8914 0 0 0 0.40738 1 22146 22146 0.79363 0 1 21678 3476 13463 13472 25934 25934 0.0350510503615169 LFLAFWGNS 9 Unmodified _LFLAFWGNS_ 0 0 0 L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|57|1|anti-sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|57|1|anti-sense L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|57|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 527.2669677734375 2 527.77146 1053.52837 0.37463 0.00019772 -3.0597 -0.0016148 -2.6851 -0.0014171 527.7676081108336 81.463 0.19569 84.951 84.793 84.988 3.4874 36 20 3 0 0 0 0.12182 1 20331 20331 5.2307 0.47466 1 59993 21679 9709 13464 13473 25935 25935 0.0037437527712427254 LFLALELEP 9 Unmodified _LFLALELEP_ 0 0 0 REV__ENSG00000184344|ENST00000329913|GDF3 REV__ENSG00000184344|ENST00000329913|GDF3 MULTI-MSMS UPN46_class_I_Rep_3 1 522.802490234375 2 522.802426 1043.5903 0.32944 0.00017223 -0.093808 -4.9043E-05 0.23563 0.00012319 522.8023109414014 96.737 0.063286 96.737 96.701 96.764 0 6 4 2 0 0 0 0.46434 1 23528 23528 4.3292 0 1 1198000 + 21680 20816 13465 13474 25936 25936 0.07024681905613761 LFLALELEP 9 Unmodified _LFLALELEP_ 0 0 0 REV__ENSG00000184344|ENST00000329913|GDF3 REV__ENSG00000184344|ENST00000329913|GDF3 MSMS UPN47_class_I_Rep_3 4 522.8026733398438 2 522.802426 1043.5903 NaN NaN NaN NaN NaN NaN NaN 91.398 1 94.799 94.299 95.299 3.401 0 0 0 0.36505 1 22863 22863 7.2892 0 1 + 21681 20816 13465 13474 25937 25937 0.07024681905613761 LFLALELEP 9 Unmodified _LFLALELEP_ 0 0 0 REV__ENSG00000184344|ENST00000329913|GDF3 REV__ENSG00000184344|ENST00000329913|GDF3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 522.802426 1043.5903 0.32944 0.00017223 -0.093808 -4.9043E-05 0.23563 0.00012319 522.8023109414014 96.737 0.063286 96.737 96.701 96.764 0 0 0 NaN 4.3292 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1198000 + 21682 20816 13465 13474 0.07024681905613761 LFLARINTLGK 11 Unmodified _LFLARINTLGK_ 0 0 0 MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|18|2|sense MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|18|2|sense MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|18|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 623.3873291015625 2 623.387522 1244.76049 0.67281 0.00041942 0.35641 0.00022218 1.0292 0.00064161 623.3876590941178 108.82 0.90051 108.82 108.68 109.58 0 153 69 4 0 0 0 0.59712 1 26606 26606 5.2969 0.76802 1 24422000 21683 15787 13466 13475 25938 25938 0.14790217627864877 LFLARINTLGK 11 Unmodified _LFLARINTLGK_ 0 0 0 MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|18|2|sense MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|18|2|sense MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 623.3892211914062 2 623.387522 1244.76049 0.55239 0.00034435 0.30588 0.00019068 0.85827 0.00053504 623.3875840128705 108.69 0.30182 112.32 112.17 112.48 3.6355 85 31 4 0 0 0 0.59712 1 26690 26690 5.2969 0.76802 1 40180000 21684 15787 13466 13475 25939 25939 0.14790217627864877 LFLASEQFA 9 Unmodified _LFLASEQFA_ 0 0 0 nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 MULTI-MSMS UPN47_class_I_Rep_1 2 513.2684936523438 2 513.26875 1024.52295 0.27582 0.00014157 -0.033446 -1.7167E-05 0.24237 0.0001244 513.2686452013764 78.066 1.3085 81.495 81.098 82.407 3.4289 269 128 3 0 0 0 0.30034 1 19314 19314 13.906 2.2658 1 2011500 21685 2764 13467 13476 25940 25940 0.011666516946661432 LFLEPALA 8 Unmodified _LFLEPALA_ 0 0 0 ENST00000361221.7_1_1:17981159-17982543:+|nuORF ENST00000361221.7_1_1:17981159-17982543:+|nuORF ENST00000361221.7_1_1:17981159-17982543:+|nuORF MSMS UPN47_class_I_Rep_1 2 437.2571716308594 2 437.257654 872.500755 NaN NaN NaN NaN NaN NaN NaN 91.198 1 94.903 94.403 95.403 3.7053 0 0 0 0.40738 1 22770 22770 0.79363 0 1 21686 6325 13468 13477 25941 25941 0.05940472016879994 LFLEPALA 8 Unmodified _LFLEPALA_ 0 0 0 ENST00000361221.7_1_1:17981159-17982543:+|nuORF ENST00000361221.7_1_1:17981159-17982543:+|nuORF ENST00000361221.7_1_1:17981159-17982543:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.2571105957031 2 437.257654 872.500755 NaN NaN NaN NaN NaN NaN NaN 89.661 1 93.286 92.786 93.786 3.6255 0 0 0 0.40738 1 21540 21540 0.79363 0 1 21687 6325 13468 13477 25942 25942 0.05940472016879994 LFLEPALA 8 Unmodified _LFLEPALA_ 0 0 0 ENST00000361221.7_1_1:17981159-17982543:+|nuORF ENST00000361221.7_1_1:17981159-17982543:+|nuORF ENST00000361221.7_1_1:17981159-17982543:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.257080078125 2 437.257654 872.500755 NaN NaN NaN NaN NaN NaN NaN 90.309 1 93.935 93.435 94.435 3.626 0 0 0 0.40581 1 21704 21704 2.8892 0 1 21688 6325 13468 13477 25943 25943 0.05940472016879994 LFLETVLNV 9 Unmodified _LFLETVLNV_ 0 0 0 AluJo_dup52177|chr12:116179328-116179620:+|1.107982605396676|0.0100007331585841|6.79|151.0|18|2|anti-sense AluJo_dup52177|chr12:116179328-116179620:+|1.107982605396676|0.0100007331585841|6.79|151.0|18|2|anti-sense AluJo_dup52177|chr12:116179328-116179620:+|1.107982605396676|0.0100007331585841|6.79|151.0|18|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.3087768554688 2 524.307875 1046.6012 0.34374 0.00018023 -0.5192 -0.00027222 -0.17546 -9.1995E-05 524.3074973552075 69.668 0.6787 72.872 72.686 73.365 3.2044 144 52 4 0 0 0 0.23293 1 17094 17094 18.146 0 1 716990 21689 115 13469 13478 25944 25944 0.07976084279880524 LFLFAITN 8 Unmodified _LFLFAITN_ 0 0 0 L1ME4b_dup2886|chr2:177246896-177247221:-|1.1933814776836111|0.057907470670265|4.37|151.0|22|2|anti-sense L1ME4b_dup2886|chr2:177246896-177247221:-|1.1933814776836111|0.057907470670265|4.37|151.0|22|2|anti-sense L1ME4b_dup2886|chr2:177246896-177247221:-|1.1933814776836111|0.057907470670265|4.37|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_2 6 469.771240234375 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 53.098 1 56.708 56.208 57.208 3.6098 0 0 0 0.40738 1 11095 11095 0.79363 0 1 21690 12921 13470 13479 25945 25945 0.05604160908217182 LFLFEPILI 9 Unmodified _LFLFEPILI_ 0 0 0 REV__ENST00000514148.1_1_4:159603282-159605833:+|nuORF REV__ENST00000514148.1_1_4:159603282-159605833:+|nuORF MSMS UPN46_class_I_Rep_3 1 552.8372802734375 2 552.838811 1103.66307 NaN NaN NaN NaN NaN NaN NaN 67.81 1 67.81 67.31 68.31 0 0 0 0 0.030364 1 15450 15450 44.407 0 1 + 21691 22757 13471 13480 25946 25946 0.11538435699048932 LFLGLMLLG 9 Unmodified _LFLGLMLLG_ 0 0 0 REV__nc|ENSG00000115155|Q9HC10-5|OTOF REV__nc|ENSG00000115155|Q9HC10-5|OTOF MSMS UPN48_class_I_Rep_2 6 488.798828125 2 488.798632 975.582711 NaN NaN NaN NaN NaN NaN NaN 77.103 1 80.714 80.214 81.214 3.6116 0 0 0 0.22893 1 18233 18233 14.582 0 1 + 21692 31965 13472 13481 25947 25947 0.09394251104356499 LFLHLAPNP 9 Unmodified _LFLHLAPNP_ 0 0 0 REV__MER58A_dup10129|chr14:34868098-34868312:+|1.069903311964307|0.0391160869890028|4.77|151.0|2|2|sense REV__MER58A_dup10129|chr14:34868098-34868312:+|1.069903311964307|0.0391160869890028|4.77|151.0|2|2|sense MSMS UPN48_class_I_Rep_2 6 511.2931823730469 2 511.295102 1020.57565 NaN NaN NaN NaN NaN NaN NaN 31.882 1 35.523 35.023 36.023 3.641 0 0 0 0.39518 1 4853 4853 1.8442 0 1 + 21693 31457 13473 13482 25948 25948 0.0661865454811732 LFLIFRLSKWY 11 Unmodified _LFLIFRLSKWY_ 0 0 0 REV__L1MEc_dup1723|chr2:26082596-26083362:+|2.1482902071533587|0.0390996814202418|5.78|151.0|42|1|anti-sense REV__L1MEc_dup1723|chr2:26082596-26083362:+|2.1482902071533587|0.0390996814202418|5.78|151.0|42|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.95843505859375 3 495.958741 1484.85439 0.30659 0.00015205 0.049189 2.4396E-05 0.35577 0.00017645 495.95875349997345 100.33 0.093971 100.33 100.28 100.37 0 16 11 2 0 0 0 0.68478 1 24459 24459 0.094841 0 1 215240 + 21694 28407 13474 13483 25949 25949 0.13135936730168396 LFLIRTYCCH 10 Unmodified _LFLIRTYCCH_ 0 0 0 L1MA3_dup1514|chr3:81528417-81531741:-|2.5695855537037104|0.4044892111932424|2.67|151.0|127|1|anti-sense L1MA3_dup1514|chr3:81528417-81531741:-|2.5695855537037104|0.4044892111932424|2.67|151.0|127|1|anti-sense L1MA3_dup1514|chr3:81528417-81531741:-|2.5695855537037104|0.4044892111932424|2.67|151.0|127|1|anti-sense MSMS UPN47_class_I_Rep_3 4 634.8195190429688 2 634.817561 1267.62057 NaN NaN NaN NaN NaN NaN NaN 30.074 1 33.385 32.885 33.885 3.3116 0 0 0 0.53105 1 4943 4943 1.6526 0 1 21695 9478 13475 13484 25950 25950 -0.002536059724889128 LFLISGEKF 9 Unmodified _LFLISGEKF_ 0 0 0 L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 526.8265991210938 2 527.302593 1052.59063 0.35223 0.00018573 0.073833 3.8932E-05 0.42606 0.00022466 527.3025760650291 69.554 0.55444 73.009 72.709 73.264 3.4548 71 39 3 0 0 0 0.060395 1 16115 16115 32.305 0 1 121450 21696 8883 13476 13485 25951 25951 0.06644101625465737 LFLISGEKF 9 Unmodified _LFLISGEKF_ 0 0 0 L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 527.302593 1052.59063 0.4043 0.00021319 -0.034601 -1.8245E-05 0.3697 0.00019494 527.3025374157148 69.452 0.64956 72.974 72.602 73.251 3.5216 0.021419 1.0638E-05 NaN 32.305 86 54 2 NaN NaN NaN NaN 0 NaN NaN 0 147470 21697 8883 13476 13485 0.06644101625465737 LFLISGEKF 9 Unmodified _LFLISGEKF_ 0 0 0 L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense L1M4_dup19940|chr20:41194000-41195127:-|1.6117225437262477|0.1795979950281235|3.17|151.0|55|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 527.302593 1052.59063 0.52301 0.00027578 -0.17553 -9.2556E-05 0.34748 0.00018323 527.3025766084168 69.362 0.68552 72.875 72.526 73.211 3.5128 -0.077753 -0.00013798 NaN 32.305 75 52 2 NaN NaN NaN NaN 0 NaN NaN 0 159150 21698 8883 13476 13485 0.06644101625465737 LFLKILVILAD 11 Unmodified _LFLKILVILAD_ 0 0 0 L1MB5_dup6038|chr11:72949482-72950628:-|2.3816597906163794|0.1052413691720346|4.5|151.0|53|1|anti-sense L1MB5_dup6038|chr11:72949482-72950628:-|2.3816597906163794|0.1052413691720346|4.5|151.0|53|1|anti-sense L1MB5_dup6038|chr11:72949482-72950628:-|2.3816597906163794|0.1052413691720346|4.5|151.0|53|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.1973266601562 2 629.412675 1256.8108 NaN NaN NaN NaN NaN NaN NaN 117.83 1 117.83 117.33 118.33 0 0 0 0 0.38417 1 29223 29223 0.30703 0 1 21699 10633 13477 13486 25952 25952 0.19266327233049196 LFLKNINV 8 Unmodified _LFLKNINV_ 0 0 0 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 MULTI-MSMS UPN47_class_I_Rep_1 2 480.796875 2 480.797478 959.580402 0.11959 5.7496E-05 -0.16098 -7.7398E-05 -0.041392 -1.9901E-05 480.79737574025023 63.663 0.46658 67.019 66.845 67.312 3.3557 66 40 2 0 0 0 0.82752 1 15134 15134 7.9102 0 1 95518 21700 16630 13478 13487 25953 25953 0.09899538690888221 LFLLVFLLVKV 11 Unmodified _LFLLVFLLVKV_ 0 0 0 L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|285|2|anti-sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|285|2|anti-sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|285|2|anti-sense MSMS UPN47_class_I_Rep_3 4 435.2946472167969 3 435.296582 1302.86792 NaN NaN NaN NaN NaN NaN NaN 12.707 1 16.081 15.581 16.581 3.3734 0 0 0 0.38417 1 136 136 0.094841 0 1 21701 8505 13479 13488 25954 25954 0.22859794509395215 LFLLVSIQ 8 Unmodified _LFLLVSIQ_ 0 0 0 REV__L1MB3_dup16270|chr20:8557024-8557732:+|1.1301314651506795|0.0028808201149614|8.62|149.0|43|3|anti-sense REV__L1MB3_dup16270|chr20:8557024-8557732:+|1.1301314651506795|0.0028808201149614|8.62|149.0|43|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 467.1014709472656 2 466.794404 931.574254 0.076848 3.5872E-05 -0.21357 -9.9693E-05 -0.13672 -6.382E-05 466.7943226782457 56.497 0.44372 59.954 59.692 60.136 3.4572 31 26 2 0 0 0 0.72333 1 12918 12918 7.2892 0 1 75049 + 21702 25837 13480 13489 25955 25955 0.10573020459366944 LFLMILDLA 9 Unmodified _LFLMILDLA_ 0 0 0 REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense MSMS UPN47_class_I_Rep_2 3 524.8118896484375 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 50.47 1 53.813 53.313 54.313 3.3431 0 0 0 0.28335 1 11096 11096 11.64 0 1 + 21703 24487 13481 13490 25956 25956 0.08194216413221511 LFLMILDLA 9 Unmodified _LFLMILDLA_ 0 0 0 REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_3 7 524.81103515625 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 50.378 1 53.999 53.499 54.499 3.621 0 0 0 0.19137 1 10214 10214 16.942 0 1 + 21704 24487 13481 13490 25957 25957 0.08194216413221511 LFLMILDLA 9 Unmodified _LFLMILDLA_ 0 0 0 REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_3 7 524.81201171875 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 50.648 1 54.269 53.769 54.769 3.621 0 0 0 0.28335 1 10298 10298 11.64 0 1 + 21705 24487 13481 13490 25958 25958 0.08194216413221511 LFLMILDLA 9 Unmodified _LFLMILDLA_ 0 0 0 REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense REV__L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_3 7 524.8112182617188 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 50.684 1 54.305 53.805 54.805 3.621 0 0 0 0.19137 1 10309 10309 16.942 0 1 + 21706 24487 13481 13490 25959 25959 0.08194216413221511 LFLNIQKRTI 10 Unmodified _LFLNIQKRTI_ 0 0 0 REV__L1MA7_dup6284|chr11:117992035-117993051:-|1.3339420807382287|0.4115463295904447|1.7|151.0|26|3|sense REV__L1MA7_dup6284|chr11:117992035-117993051:-|1.3339420807382287|0.4115463295904447|1.7|151.0|26|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 623.3878784179688 2 623.387522 1244.76049 0.63471 0.00039567 0.47173 0.00029407 1.1064 0.00068974 623.3876781048372 108.68 0.83012 112.21 112.11 112.94 3.5333 205 98 4 0 0 0 0.54822 1 26607 26607 5.7319 0 1 31049000 + 21707 25517 13482 13491 25960 25960 0.14790217627887614 LFLPDIAFKA 10 Unmodified _LFLPDIAFKA_ 0 0 0 L1MEf_dup1405|chr2:138580226-138581951:-|1.2138048025611914|0.0296208318988841|5.36|151.0|96|2|anti-sense L1MEf_dup1405|chr2:138580226-138581951:-|1.2138048025611914|0.0296208318988841|5.36|151.0|96|2|anti-sense L1MEf_dup1405|chr2:138580226-138581951:-|1.2138048025611914|0.0296208318988841|5.36|151.0|96|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 567.329833984375 2 567.831517 1133.64848 0.47952 0.00027229 -0.09485 -5.3859E-05 0.38467 0.00021843 567.8314651127088 83.978 0.55835 87.328 87.195 87.753 3.35 118 64 2 0 0 0 0.84575 1 21124 21124 2.9952 0 1 203880 21708 13250 13483 13492 25961 25961 0.08700363550883594 LFLPFMHFG 9 Unmodified _LFLPFMHFG_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|154|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|154|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|154|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.7874755859375 2 554.786056 1107.55756 NaN NaN NaN NaN NaN NaN NaN 59.708 1 63.188 62.688 63.688 3.4801 0 0 0 0.22893 1 13143 13143 14.582 0 1 21709 13331 13484 13493 25962 25962 0.008081963017730232 LFLPVWVPF 9 Unmodified _LFLPVWVPF_ 0 0 0 REV__L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|44|3|anti-sense REV__L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 559.3237915039062 2 559.325871 1116.63719 NaN NaN NaN NaN NaN NaN NaN 89.982 1 89.982 89.482 90.482 0 0 0 0 0.3264 1 21677 21677 9.3474 0 1 + 21710 25635 13485 13494 25963 25963 0.08353586247426392 LFLREQPY 8 Unmodified _LFLREQPY_ 0 0 0 REV__Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|70|1|anti-sense REV__Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|70|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 533.7801513671875 2 533.290017 1064.56548 0.33099 0.00017651 0.32683 0.00017429 0.65782 0.00035081 533.290057618371 61.926 0.45558 65.186 64.966 65.422 3.2594 46 30 3 0 0 0 0.82752 1 14561 14561 18.135 1.1927 1 75329 + 21711 32577 13486 13495 25964 25964 0.03578046822894976 LFLSGSLLG 9 Unmodified _LFLSGSLLG_ 0 0 0 L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|120|1|anti-sense L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|120|1|anti-sense L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|120|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 453.7680969238281 2 453.768386 905.522219 -0.024185 -1.0975E-05 0.21449 9.7327E-05 0.1903 8.6353E-05 453.76854936645094 51.872 0.47232 55.465 55.251 55.723 3.5932 43 30 2 0 0 0 0.32219 2 11488 11488;11542 12.532 0 1 76469 21712 13748 13487 13496 25965;25966 25965 0.06567857045638448 LFLSGSLLG 9 Unmodified _LFLSGSLLG_ 0 0 0 L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|120|1|anti-sense L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|120|1|anti-sense L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|120|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 453.7680358886719 2 453.768386 905.522219 -0.13163 -5.9731E-05 1.1296 0.00051259 0.998 0.00045286 453.76873860130814 52.374 0.15701 55.579 55.478 55.635 3.2055 15 11 2 0 0 0 0.32219 2 11745 11741;11745 12.532 0 1 70407 21713 13748 13487 13496 25967;25968 25968 0.06567857045638448 LFLSIAPSSL 10 Unmodified _LFLSIAPSSL_ 0 0 0 L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|62|2|anti-sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|62|2|anti-sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.8153076171875 2 524.307875 1046.6012 0.024915 1.3063E-05 -0.26327 -0.00013803 -0.23835 -0.00012497 524.3075691594958 69.587 1.0399 72.863 72.408 73.448 3.2761 242 86 4 0 0 0 0.30832 1 17060 17060 30.637 0 1 732220 21714 13063 13488 13497 25969 25969 0.07976084279880524 LFLSIAPSSL 10 Unmodified _LFLSIAPSSL_ 0 0 0 L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|62|2|anti-sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|62|2|anti-sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.3079223632812 2 524.307875 1046.6012 0.34374 0.00018023 -0.5192 -0.00027222 -0.17546 -9.1995E-05 524.3074973552075 69.668 0.6787 72.872 72.686 73.365 3.2044 144 52 4 0 0 0 0.30832 1 17136 17136 30.637 0 1 716990 21715 13063 13488 13497 25970 25970 0.07976084279880524 LFLSVASGL 9 Unmodified _LFLSVASGL_ 0 0 0 REV__ENSG00000253309|ENST00000681248|SERPINE3 REV__ENSG00000253309|ENST00000681248|SERPINE3 MULTI-MSMS UPN47_class_I_Rep_1 2 453.7695007324219 2 453.768386 905.522219 -0.024185 -1.0975E-05 0.21449 9.7327E-05 0.1903 8.6353E-05 453.76854936645094 51.872 0.47232 55.465 55.251 55.723 3.5932 43 30 2 0 0 0 0.33654 1 11505 11505 11.64 0 1 76469 + 21716 21364 13489 13498 25971 25971 0.06567857045627079 LFLSYQILN 9 Unmodified _LFLSYQILN_ 0 0 0 REV__L1ME1_dup5904|chr3:58347251-58347799:-|1.02146497811696|0.0061311301817618|7.38|151.0|32|2|anti-sense REV__L1ME1_dup5904|chr3:58347251-58347799:-|1.02146497811696|0.0061311301817618|7.38|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.8134155273438 2 555.813325 1109.6121 0.49178 0.00027334 -0.27639 -0.00015362 0.21539 0.00011972 555.8131074720005 79.577 0.1646 83.21 83.097 83.262 3.6331 23 16 2 0 0 0 0.42249 1 18907 18907 6.7232 0.99131 1 67903 + 21717 27785 13490 13499 25972 25972 0.06167486654203458 LFLTDRPLG 9 Unmodified _LFLTDRPLG_ 0 0 0 L1ME4a_dup4399|chr2:127744198-127744601:+|2.7226576211397435|0.2395178721150941|3.51|151.0|25|2|anti-sense L1ME4a_dup4399|chr2:127744198-127744601:+|2.7226576211397435|0.2395178721150941|3.51|151.0|25|2|anti-sense L1ME4a_dup4399|chr2:127744198-127744601:+|2.7226576211397435|0.2395178721150941|3.51|151.0|25|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 515.8110961914062 2 516.297842 1030.58113 0.38731 0.00019997 1.0784 0.00055678 1.4657 0.00075675 516.7989500384743 63.757 0.051254 67.231 67.202 67.253 3.4743 6 4 2 0 0 0 0.12099 1 14363 14363 6.7232 1.4925 1 21760 21718 12874 13491 13500 25973 25973 0.06706333339934645 LFLTKTAI 8 Unmodified _LFLTKTAI_ 0 0 0 L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|5|1|sense L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|5|1|sense L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 453.78472900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.85 1 55.443 54.943 55.943 3.5932 0 0 0 0.4032 1 11493 11493 6.3541 0 1 21719 12561 13492 13501 25974 25974 0.10204733942305211 LFLTKTAI 8 Unmodified _LFLTKTAI_ 0 0 0 L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|5|1|sense L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|5|1|sense L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 453.7848815917969 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.982 1 55.575 55.075 56.075 3.5932 0 0 0 0.40581 1 11532 11532 2.8892 0 1 21720 12561 13492 13501 25975 25975 0.10204733942305211 LFLVFCWLLY 10 Unmodified _LFLVFCWLLY_ 0 0 0 L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|288|2|anti-sense L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|288|2|anti-sense L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|288|2|anti-sense MSMS UPN48_class_I_Rep_1 5 439.5750427246094 3 439.575239 1315.70389 NaN NaN NaN NaN NaN NaN NaN 37.661 1 41.166 40.666 41.666 3.5052 0 0 0 0.53105 1 6430 6430 7.1017 0 1 21721 14893 13493 13502 25976 25976 0.05866453747034939 LFLVGRRR 8 Unmodified _LFLVGRRR_ 0 0 0 REV__L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense REV__L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 508.21185302734375 2 508.827435 1015.64032 0.25639 0.00013046 1.2832 0.00065291 1.5396 0.00078337 508.8279715893542 67.901 0.099167 71.096 71.04 71.139 3.1946 12 8 2 0 0 0 0.72333 1 16452 16452 0.69038 0 1 58704 + 21722 29868 13494 13503 25977 25977 0.1331227414480054 LFLVGRRR 8 Unmodified _LFLVGRRR_ 0 0 0 REV__L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense REV__L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 508.827435 1015.64032 0.091113 4.6361E-05 2.0042 0.0010198 2.0953 0.0010662 508.82826985899084 67.872 0.10306 71.136 71.062 71.165 3.2636 0.020068 0.00029288 NaN 0.69038 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 35201 + 21723 29868 13494 13503 0.1331227414480054 LFLVMKPK 8 Unmodified _LFLVMKPK_ 0 0 0 REV__ENST00000569976.5_1_16:18806770-18812824:-|nuORF REV__ENST00000569976.5_1_16:18806770-18812824:-|nuORF MSMS UPN47_class_I_Rep_2 3 488.3067626953125 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 66.448 1 69.706 69.206 70.206 3.2588 0 0 0 0.40738 1 15965 15965 0.79363 0 1 + 21724 23085 13495 13504 25978 25978 0.11037957341250149 LFLVQNHTF 9 Unmodified _LFLVQNHTF_ 0 0 0 L1MC4a_dup6145|chr10:21980256-21980784:+|1.0037931111017175|0.007053097766984|7.15|151.0|35|3|anti-sense L1MC4a_dup6145|chr10:21980256-21980784:+|1.0037931111017175|0.007053097766984|7.15|151.0|35|3|anti-sense L1MC4a_dup6145|chr10:21980256-21980784:+|1.0037931111017175|0.007053097766984|7.15|151.0|35|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.8019409179688 2 559.803291 1117.59203 0.49889 0.00027928 -1.0052 -0.0005627 -0.50627 -0.00028341 559.8025804162951 68.908 0.76141 72.416 71.909 72.671 3.5083 96 57 2 0 0 0 0.40174 1 15833 15833 7.9102 7.9102 1 146530 21725 11596 13496 13505 25979 25979 0.03793735714225477 LFLWDCSGIA 10 Unmodified _LFLWDCSGIA_ 0 0 0 L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|207|2|anti-sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|207|2|anti-sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|207|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 562.3446044921875 2 562.775885 1123.53722 0.47294 0.00026616 -3.8091 -0.0021437 -3.3362 -0.0018775 562.7738002606787 81.635 0.17444 84.958 84.849 85.024 3.3231 18 16 2 0 0 0 0.84575 1 20456 20456 3.5965 0.70727 1 65275 21726 15127 13497 13506 25980 25980 -0.01961019148689047 LFLYHKEL 8 Unmodified _LFLYHKEL_ 0 0 0 REV__ENST00000464029.5_1_7:105732128-105732209:-|nuORF REV__ENST00000464029.5_1_7:105732128-105732209:-|nuORF MSMS UPN48_class_I_Rep_2 6 531.8012084960938 2 531.80276 1061.59097 NaN NaN NaN NaN NaN NaN NaN 63.594 1 67.069 66.569 67.569 3.4743 0 0 0 0.36226 1 14311 14311 19.257 0 1 + 21727 22455 13498 13507 25981 25981 0.06263521345317713 LFLYRFFC 8 Unmodified _LFLYRFFC_ 0 0 0 Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|109|1|anti-sense Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|109|1|anti-sense Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|109|1|anti-sense MSMS UPN48_class_I_Rep_1 5 554.78759765625 2 554.786056 1107.55756 NaN NaN NaN NaN NaN NaN NaN 59.764 1 63.244 62.744 63.744 3.4801 0 0 0 0.35537 1 13161 13161 20.871 0 1 21728 32991 13499 13508 25982 25982 0.008081963017730232 LFMCFWIQF 9 Unmodified _LFMCFWIQF_ 0 0 0 L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|150|3|anti-sense L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|150|3|anti-sense L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|150|3|anti-sense MSMS UPN48_class_I_Rep_1 5 617.7918701171875 2 617.793023 1233.57149 NaN NaN NaN NaN NaN NaN NaN 62.314 1 65.777 65.277 66.277 3.4625 0 0 0 0.38639 1 13935 13935 3.9444 0 1 21729 13780 13500 13509 25983 25983 -0.03594894261459558 LFMCLFNIY 9 Unmodified _LFMCLFNIY_ 0 0 0 L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|49|1|anti-sense L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|49|1|anti-sense L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|49|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 582.7862548828125 2 582.285031 1162.55551 0.46765 0.0002723 -0.51208 -0.00029818 -0.044433 -2.5872E-05 582.284472431379 78.306 0.98221 81.588 81.16 82.142 3.2816 254 105 3 0 0 0 0.46434 1 19426 19426 4.3292 0.38484 1 478270 21730 8900 13501 13510 25984 25984 -0.019266004983364837 LFMFHVGK 8 Unmodified _LFMFHVGK_ 0 0 0 REV__ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron REV__ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 490.25262451171875 2 489.765123 977.515694 -0.28378 -0.00013898 1.4181 0.00069455 1.1343 0.00055556 489.7658413783169 34.424 0.54499 38.11 37.841 38.386 3.6859 55 42 2 0 0 0 0.82752 1 6224 6224 5.7604 0 1 141690 + 21731 19996 13502 13511 25985 25985 0.02603640613256175 LFMKCKRP 8 Unmodified _LFMKCKRP_ 0 0 0 REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 511.7852783203125 2 511.785533 1021.55651 -0.38046 -0.00019471 -0.75612 -0.00038697 -1.1366 -0.00058168 511.78515144500653 28.568 0.7831 31.902 31.626 32.409 3.3337 107 67 2 0 0 0 0.82752 1 4603 4603 0.69038 0 1 71516 + 21732 21989 13503 13512 25986 25986 0.04659658661216781 LFMLFGEFFD 10 Unmodified _LFMLFGEFFD_ 0 0 0 REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|352|3|anti-sense REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|352|3|anti-sense MSMS UPN47_class_I_Rep_1 2 633.2984619140625 2 633.299193 1264.58383 NaN NaN NaN NaN NaN NaN NaN 31.185 1 34.915 34.415 35.415 3.7293 0 0 0 0.53105 1 5197 5197 1.8442 0.19162 1 + 21733 30157 13504 13513 25987 25987 -0.03787579317418022 LFMLIVAGPV 10 Unmodified _LFMLIVAGPV_ 0 0 0 ENSG00000138379|ENST00000260950|MSTN ENSG00000138379|ENST00000260950|MSTN ENSG00000138379|ENST00000260950|MSTN MSMS UPN46_class_I_Rep_3 1 530.3162841796875 2 530.317189 1058.61982 NaN NaN NaN NaN NaN NaN NaN 63.241 1 63.241 62.741 63.741 0 0 0 0 0.53105 1 14191 14191 1.8442 0.36234 1 21734 3084 13505 13514 25988 25988 0.09285922650110479 LFMRHGLAL 9 Unmodified _LFMRHGLAL_ 0 0 0 AluJb_dup7818|chr1:153858288-153858613:+|1.2880674573392576|0.0046611908221255|8.11|151.0|12|2|anti-sense AluJb_dup7818|chr1:153858288-153858613:+|1.2880674573392576|0.0046611908221255|8.11|151.0|12|2|anti-sense AluJb_dup7818|chr1:153858288-153858613:+|1.2880674573392576|0.0046611908221255|8.11|151.0|12|2|anti-sense MSMS UPN47_class_I_Rep_1 2 529.3167724609375 2 529.302404 1056.59026 NaN NaN NaN NaN NaN NaN NaN 57.892 1 61.329 60.829 61.829 3.437 0 0 0 0.38299 1 13327 13327 4.756 0.42677 1 21735 68 13506 13515 25989 25989 0.06422403424630829 LFMRLLKLQ 9 Unmodified _LFMRLLKLQ_ 0 0 0 REV__HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|54|2|sense REV__HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|54|2|sense MSMS UPN48_class_I_Rep_2 6 581.3621215820312 2 581.362462 1160.71037 NaN NaN NaN NaN NaN NaN NaN 87.55 1 91.278 90.778 91.778 3.7279 0 0 0 0.4007 1 20836 20836 0.52476 0 1 + 21736 23830 13507 13516 25990 25990 0.13644391698380787 LFMTNLSCKL 10 Unmodified _LFMTNLSCKL_ 0 0 0 REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|242|2|anti-sense REV__L1MA4A_dup4851|chr13:20750084-20754627:-|3.0509751848933337|0.0776100397910673|5.3|151.0|242|2|anti-sense MSMS UPN46_class_I_Rep_3 1 585.3051147460938 2 585.306495 1168.59844 NaN NaN NaN NaN NaN NaN NaN 59.334 1 59.334 58.834 59.834 0 0 0 0 0.53105 1 13109 13109 10.074 2.1638 1 + 21737 25310 13508 13517 25991 25991 0.02088169559101516 LFMVALHF 8 Unmodified _LFMVALHF_ 0 0 0 REV__L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|45|3|anti-sense REV__L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|45|3|anti-sense MSMS UPN47_class_I_Rep_2 3 489.2693176269531 2 489.267499 976.520445 NaN NaN NaN NaN NaN NaN NaN 34.82 1 38.245 37.745 38.745 3.4253 0 0 0 0.4032 1 6344 6344 6.3541 0 1 + 21738 27928 13509 13518 25992 25992 0.031245247560150347 LFNDFRVL 8 Unmodified _LFNDFRVL_ 0 0 0 REV__MER21C_dup4679|chr17:21306038-21306491:-|2.389709909131281|0.2367632932994197|3.34|151.0|26|3|anti-sense REV__MER21C_dup4679|chr17:21306038-21306491:-|2.389709909131281|0.2367632932994197|3.34|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_2 3 512.302734375 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 57.883 1 61.174 60.674 61.674 3.2912 0 0 0 0.4032 1 13358 13358 6.3541 0 1 + 21739 31242 13510 13519 25993 25993 0.044540641684761795 LFNDGFRL 8 Unmodified _LFNDGFRL_ 0 0 0 REV__L1MC2_dup156|chr1:86959672-86961124:+|1.6425666187020869|0.0417194344771865|5.3|151.0|11|1|sense REV__L1MC2_dup156|chr1:86959672-86961124:+|1.6425666187020869|0.0417194344771865|5.3|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 491.26153564453125 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 57.921 1 61.358 60.858 61.858 3.437 0 0 0 0.40581 1 13336 13336 2.8892 0 1 + 21740 26637 13511 13520 25994 25994 0.016932046173451454 LFNFFALVI 9 Unmodified _LFNFFALVI_ 0 0 0 ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron;ENSG00000151687.14,ANKAR,chr2,+,I16.1,189728822,189730494|60|4.14|3|intron ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron MSMS UPN47_class_I_Rep_1 2 542.3134765625 2 542.315503 1082.61645 NaN NaN NaN NaN NaN NaN NaN 63.878 1 67.234 66.734 67.734 3.3557 0 0 0 0.38639 1 15144 15144 3.9444 0 1 21741 3597 13512 13521 25995 25995 0.07844995867731086 LFNFLRNR 8 Unmodified _LFNFLRNR_ 0 0 0 L1MB3_dup1768|chr2:46017039-46017806:-|1.037958496050037|0.0957483081953995|3.44|151.0|40|1|anti-sense L1MB3_dup1768|chr2:46017039-46017806:-|1.037958496050037|0.0957483081953995|3.44|151.0|40|1|anti-sense L1MB3_dup1768|chr2:46017039-46017806:-|1.037958496050037|0.0957483081953995|3.44|151.0|40|1|anti-sense MSMS UPN46_class_I_Rep_3 1 540.3081665039062 2 540.309075 1078.6036 NaN NaN NaN NaN NaN NaN NaN 43.784 1 43.784 43.284 44.284 0 0 0 0 0.40364 1 8769 8769 5.7604 0 1 21742 10387 13513 13522 25996 25996 0.06743977528208234 LFNFMSNAY 9 Unmodified _LFNFMSNAY_ 0 0 0 REV__L1MB3_dup6622|chr7:45055696-45056372:-|2.56880545408774|0.032847231465607|6.29|151.0|38|2|anti-sense REV__L1MB3_dup6622|chr7:45055696-45056372:-|2.56880545408774|0.032847231465607|6.29|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.7529296875 2 553.75241 1105.49027 NaN NaN NaN NaN NaN NaN NaN 60.9 1 64.166 63.666 64.666 3.2654 0 0 0 0.35339 1 14277 14277 7.9102 1.5561 1 + 21743 25905 13514 13523 25997 25997 -0.058258786998294454 LFNFQRQKG 9 Unmodified _LFNFQRQKG_ 0 0 0 REV__L1M3c_dup109|chr2:240473696-240474096:+|1.1676879620966456|0.1160248359122351|3.33|151.0|18|2|anti-sense REV__L1M3c_dup109|chr2:240473696-240474096:+|1.1676879620966456|0.1160248359122351|3.33|151.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.2239379882812 2 569.311815 1136.60908 NaN NaN NaN NaN NaN NaN NaN 62.115 1 62.115 61.615 62.615 0 0 0 0 0.39518 1 13869 13869 1.8442 0 1 + 21744 24321 13515 13524 25998 25998 0.04623656320018199 LFNGTVLTPL 10 Unmodified _LFNGTVLTPL_ 0 0 0 REV__LTR16C_dup2548|chr7:100287212-100287391:-|1.171346201248132|0.0097655219596726|6.91|151.0|5|2|sense REV__LTR16C_dup2548|chr7:100287212-100287391:-|1.171346201248132|0.0097655219596726|6.91|151.0|5|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.8132934570312 2 537.813325 1073.6121 0.31829 0.00017118 -0.54845 -0.00029496 -0.23015 -0.00012378 537.812960877201 73.589 0.18748 73.589 73.554 73.742 0 22 16 3 0 0 0 0.4965 1 17066 17066 12.241 0 1 801710 + 21745 30854 13516 13525 25999 25999 0.07823486654183398 LFNIAFLDNH 10 Unmodified _LFNIAFLDNH_ 0 0 0 REV__L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|240|2|anti-sense REV__L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|240|2|anti-sense MSMS UPN47_class_I_Rep_2 3 401.87762451171875 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 16.784 1 20.17 19.67 20.67 3.3864 0 0 0 0.53105 1 1133 1133 0.56317 0 1 + 21746 30628 13517 13526 26000 26000 0.01520816880338316 LFNKTAANLV 10 Unmodified _LFNKTAANLV_ 0 0 0 ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4;ENST00000527691.5_1_1:156568015-156568774:-|nuORF;ENST00000531900.1_1_1:156568015-156568838:-|nuORF;nc|ENSG00000160818|Q5T3I0-2|GPATCH4;ENST00000473910.5_1_1:156567604-156568774:-|nuORF;ENST00000498756.5_1_1:156566177-156568838:-|nuORF;ENST00000506832.6_1_1:156567604-156568838:-|nuORF ENSG00000160818|ENST00000368232|GPATCH4 ENSG00000160818|ENST00000368232|GPATCH4 MSMS UPN48_class_I_Rep_3 7 545.8189086914062 2 545.816399 1089.61824 NaN NaN NaN NaN NaN NaN NaN 82.358 1 86.064 85.564 86.564 3.7066 0 0 0 0.53105 1 19519 19519 2.9952 1.151 1 21747 3889 13518 13527 26001 26001 0.0770200488568662 LFNLGVERI 9 Unmodified _LFNLGVERI_ 0 0 0 L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|36|2|sense L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|36|2|sense L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8225708007812 2 530.811116 1059.60768 0.36604 0.0001943 0.16548 8.7839E-05 0.53152 0.00028214 530.8112614412088 63.584 0.68454 66.758 66.456 67.141 3.1741 73 58 2 0 0 0 0.28552 1 15102 15102 14.838 0 1 121240 21748 11760 13519 13528 26002 26002 0.08026022231297247 LFNLLTPVF 9 Unmodified _LFNLLTPVF_ 0 0 0 REV__L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|196|1|anti-sense REV__L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|196|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 532.314453125 2 532.312961 1062.61137 0.4522 0.00024071 0.66018 0.00035142 1.1124 0.00059213 532.3133314520153 63.884 0.47418 67.342 67.092 67.567 3.4578 67 34 3 0 0 0 0.15122 1 14398 14398 25.399 0 1 135260 + 21749 24088 13520 13529 26003 26003 0.08256692005124933 LFNNSLASL 9 Unmodified _LFNNSLASL_ 0 0 0 ENSG00000186907|ENST00000335099|RTN4RL2 ENSG00000186907|ENST00000335099|RTN4RL2 ENSG00000186907|ENST00000335099|RTN4RL2 MULTI-MSMS UPN47_class_I_Rep_3 4 489.7666320800781 2 489.766374 977.518196 -0.36817 -0.00018032 -1.168 -0.00057205 -1.5362 -0.00075237 489.7657528212215 34.788 0.56996 38.052 37.821 38.391 3.2639 79 46 2 0 0 0 0.09884 1 6356 6356 34.102 0 1 136190 21750 5173 13521 13530 26004 26004 0.028537675518805372 LFNQEYQL 8 Unmodified _LFNQEYQL_ 0 0 0 L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|12|2|sense L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|12|2|sense L1MC4a_dup10075|chr21:29335884-29336654:-|1.424901289963138|0.0648361881791149|4.46|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 527.7652587890625 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 73.503 1 76.74 76.24 77.24 3.2363 0 0 0 0.40292 1 18156 18156 6.7232 0.51738 1 21751 11541 13522 13531 26005 26005 -0.011505363107289668 LFNQSFTDDI 10 Unmodified _LFNQSFTDDI_ 0 0 0 L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|36|2|anti-sense L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|36|2|anti-sense L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|36|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 600.2838745117188 2 600.282586 1198.55062 0.48818 0.00029305 -0.10911 -6.5498E-05 0.37907 0.00022755 600.2824411359198 58.646 0.64317 62.169 61.889 62.532 3.5231 75 42 2 0 0 0 0.55724 1 12818 12818 4.5289 0.58447 1 240860 21752 12934 13523 13532 26006 26006 -0.040714898357464335 LFNRCLLV 8 Unmodified _LFNRCLLV_ 0 0 0 REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|84|2|anti-sense REV__L1MA6_dup4290|chr13:21315407-21316926:-|2.614424811240049|0.0293916338518432|6.47|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_2 3 489.2740783691406 2 489.28368 976.552807 NaN NaN NaN NaN NaN NaN NaN 45.361 1 48.714 48.214 49.214 3.3534 0 0 0 0.40625 1 9551 9551 2.3027 0 1 + 21753 25465 13524 13533 26007 26007 0.06359312159008823 LFNVSVSLLL 10 Unmodified _LFNVSVSLLL_ 0 0 0 REV__L1MB7_dup3472|chr2:224518164-224518517:-|1.0789339907752868|0.0919898065750066|3.55|151.0|23|3|anti-sense REV__L1MB7_dup3472|chr2:224518164-224518517:-|1.0789339907752868|0.0919898065750066|3.55|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.8380737304688 2 552.8368 1103.65905 0.45741 0.00025287 -0.47943 -0.00026505 -0.022021 -1.2174E-05 552.8364651979159 61.354 1.0369 64.62 64.292 65.329 3.2654 145 71 3 0 0 0 0.31093 1 14525 14525 29.841 0.759 1 481630 + 21754 26253 13525 13534 26008 26008 0.1113634620535322 LFNVYFNT 8 Unmodified _LFNVYFNT_ 0 0 0 REV__L1MEd_dup12512|chr9:129939641-129939918:+|1.514996623705659|0.0095470729931511|7.31|151.0|14|1|anti-sense REV__L1MEd_dup12512|chr9:129939641-129939918:+|1.514996623705659|0.0095470729931511|7.31|151.0|14|1|anti-sense MSMS UPN48_class_I_Rep_3 7 509.2553405761719 2 509.255643 1016.49673 NaN NaN NaN NaN NaN NaN NaN 80.601 1 84.264 83.764 84.764 3.6635 0 0 0 0.40157 1 19072 19072 7.2892 0 1 + 21755 28513 13526 13535 26009 26009 -0.010856174768264282 LFPAVHNLL 9 Unmodified _LFPAVHNLL_ 0 0 0 Tigger2b_Pri_dup1839|chr17:396725-397298:-|2.8910097114598847|0.1427218831822628|4.34|150.0|30|1|anti-sense Tigger2b_Pri_dup1839|chr17:396725-397298:-|2.8910097114598847|0.1427218831822628|4.34|150.0|30|1|anti-sense Tigger2b_Pri_dup1839|chr17:396725-397298:-|2.8910097114598847|0.1427218831822628|4.34|150.0|30|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.3031005859375 2 512.302927 1022.5913 0.17264 8.8442E-05 0.33283 0.00017051 0.50546 0.00025895 512.3030547371492 58.112 0.52881 61.28 61.049 61.578 3.1681 50 32 2 0 0 0 0.32219 1 13557 13557 12.532 3.1841 1 73453 21756 33343 13527 13536 26010 26010 0.08090941065177049 LFPDLFGVL 9 Unmodified _LFPDLFGVL_ 0 0 0 REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|126|3|anti-sense REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|126|3|anti-sense MSMS UPN47_class_I_Rep_3 4 510.78955078125 2 510.791861 1019.56917 NaN NaN NaN NaN NaN NaN NaN 56.938 1 60.11 59.61 60.61 3.1721 0 0 0 0.34056 1 13125 13125 8.5933 0 1 + 21757 27938 13528 13537 26011 26011 0.06016716596764127 LFPDQCILP 9 Unmodified _LFPDQCILP_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|32|1|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|32|1|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|32|1|anti-sense MSMS UPN47_class_I_Rep_3 4 523.2896728515625 2 523.272978 1044.5314 NaN NaN NaN NaN NaN NaN NaN 66.544 1 69.729 69.229 70.229 3.1853 0 0 0 0.381 1 16057 16057 5.2307 0 1 21758 11545 13529 13538 26012 26012 0.01091882339642325 LFPFVYRC 8 Unmodified _LFPFVYRC_ 0 0 0 REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|36|3|anti-sense REV__L1MB7_dup22770|chr22:46918979-46919727:-|1.1068638513188322|0.03140627032113|5.14|150.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.2894897460938 2 522.770406 1043.52626 0.27418 0.00014334 -0.20534 -0.00010735 0.068843 3.5989E-05 522.7702431872643 65.499 1.1018 68.855 68.552 69.654 3.3557 127 66 2 0 0 0 0.82752 1 15841 15841 10.183 0 1 302200 + 21759 26232 13530 13539 26013 26013 0.006236232676656073 LFPFWEPD 8 Unmodified _LFPFWEPD_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|161|3|sense;L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|38|2|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|161|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|161|3|sense MSMS UPN48_class_I_Rep_3 7 525.7819213867188 2 525.750193 1049.48583 NaN NaN NaN NaN NaN NaN NaN 117.84 1 121.45 120.95 121.95 3.6124 0 0 0 0.40738 1 28026 28026 0.79363 0 1 21760 9066 13531 13540 26014 26014 -0.036930198510845 LFPGLREPE 9 Unmodified _LFPGLREPE_ 0 0 0 nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF nc|ENSG00000069702|Q03167-2|TGFBR3 nc|ENSG00000069702|Q03167-2|TGFBR3 MULTI-MSMS UPN47_class_I_Rep_3 4 529.2879028320312 2 529.287474 1056.5604 0.33017 0.00017476 0.65299 0.00034562 0.98316 0.00052037 529.2874823032021 62.005 0.54412 65.171 64.879 65.423 3.1667 94 38 3 0 0 0 0.3898 1 14743 14743 8.5933 0 1 127350 21761 1060 13532 13541 26015 26015 0.03437742960295509 LFPGRDYID 9 Unmodified _LFPGRDYID_ 0 0 0 nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENST00000508262.2_2_4:86938383-87019884:-|nuORF;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000107643|ENST00000374189|MAPK8;ENSG00000109339|ENST00000641462|MAPK10 nc|ENSG00000050748|P45984-3|MAPK9 nc|ENSG00000050748|P45984-3|MAPK9 MULTI-MSMS UPN46_class_I_Rep_3 1 547.8087768554688 2 548.277106 1094.53966 -0.21255 -0.00011654 -0.49855 -0.00027335 -0.71111 -0.00038988 548.2767069011562 13.602 0.40154 13.602 13.451 13.853 0 81 45 2 0 0 0 0.48643 1 399 399 2.0598 0.21551 1 47730 21762 16623 13533 13542 26016 26016 -0.0038284741938241496 LFPGTPAPAP 10 Unmodified _LFPGTPAPAP_ 0 0 0 REV__ENST00000595348.1_1_19:8576453-8576675:-|nuORF REV__ENST00000595348.1_1_19:8576453-8576675:-|nuORF MSMS UPN47_class_I_Rep_1 2 484.2646179199219 2 484.26601 966.517468 NaN NaN NaN NaN NaN NaN NaN 39.931 1 43.598 43.098 44.098 3.6668 0 0 0 0.53105 1 7863 7863 6.2058 1.3088 1 + 21763 19055 13534 13543 26017 26017 0.032869729028334405 LFPIMFINL 9 Unmodified _LFPIMFINL_ 0 0 0 REV__L1ME1_dup11714|chr6:72754662-72755897:-|1.048068550495648|0.0037257279246379|8.14|147.0|100|3|anti-sense REV__L1ME1_dup11714|chr6:72754662-72755897:-|1.048068550495648|0.0037257279246379|8.14|147.0|100|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.3153686523438 2 554.317189 1106.61982 NaN NaN NaN NaN NaN NaN NaN 59.817 1 63.334 62.834 63.834 3.5169 0 0 0 0.39326 1 13088 13088 2.3027 0 1 + 21764 27580 13535 13544 26018 26018 0.0707792265009175 LFPIPRIGKMG 11 Unmodified _LFPIPRIGKMG_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MSMS UPN47_class_I_Rep_1 2 410.25372314453125 3 410.246005 1227.71618 NaN NaN NaN NaN NaN NaN NaN 86.74 1 90.355 89.855 90.855 3.6153 0 0 0 0.38417 1 21670 21670 0.45452 0 1 21765 5157 13536 13545 26019 26019 0.11143490210042728 LFPISSWVLD 10 Unmodified _LFPISSWVLD_ 0 0 0 HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|140|3|anti-sense HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|140|3|anti-sense HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|140|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.8187866210938 2 588.818607 1175.62266 -0.078723 -4.6353E-05 -0.49752 -0.00029295 -0.57625 -0.0003393 588.8183210883151 36.89 0.84082 40.137 39.727 40.568 3.247 101 60 2 0 0 0 0.56033 1 7102 7102 3.5965 0.31518 1 106240 21766 8279 13537 13546 26020 26020 0.0418746930861289 LFPLFRKFI 9 Unmodified _LFPLFRKFI_ 0 0 0 REV__L1M5_dup32241|chrX:110027788-110028984:-|1.1855276830729662|0.0116796696014257|6.67|150.0|69|2|anti-sense REV__L1M5_dup32241|chrX:110027788-110028984:-|1.1855276830729662|0.0116796696014257|6.67|150.0|69|2|anti-sense MSMS UPN46_class_I_Rep_3 1 590.8665161132812 2 590.865695 1179.71684 NaN NaN NaN NaN NaN NaN NaN 100.3 1 100.3 99.804 100.8 0 0 0 0 0.4007 1 24448 24448 0.52476 0 1 + 21767 24654 13538 13547 26021 26021 0.13416652921409877 LFPLLFLV 8 Unmodified _LFPLLFLV_ 0 0 0 L1MA4_dup3449|chr5:138995537-138996513:-|2.4513801911433344|0.0718978049866113|5.09|151.0|38|1|anti-sense L1MA4_dup3449|chr5:138995537-138996513:-|2.4513801911433344|0.0718978049866113|5.09|151.0|38|1|anti-sense L1MA4_dup3449|chr5:138995537-138996513:-|2.4513801911433344|0.0718978049866113|5.09|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_1 2 481.3074645996094 2 481.30969 960.604826 NaN NaN NaN NaN NaN NaN NaN 40.401 1 44.068 43.568 44.568 3.6668 0 0 0 0.4032 1 8007 8007 6.3541 0 1 21768 9679 13539 13548 26022 26022 0.12294798844402521 LFPPACHLF 9 Unmodified _LFPPACHLF_ 0 0 0 MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 522.7713012695312 2 522.770406 1043.52626 0.27418 0.00014334 -0.20534 -0.00010735 0.068843 3.5989E-05 522.7702431872643 65.499 1.1018 68.855 68.552 69.654 3.3557 127 66 2 0 0 0 0.19841 1 15761 15761 20.871 0 1 302200 21769 16175 13540 13549 26023 26023 0.006236232676656073 LFPPACHLF 9 Unmodified _LFPPACHLF_ 0 0 0 MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 522.7718505859375 2 522.770406 1043.52626 -0.04409 -2.3049E-05 -0.30767 -0.00016084 -0.35176 -0.00018389 522.7704511973017 65.7 1.1783 68.956 68.715 69.893 3.2556 100 73 2 0 0 0 0.19841 1 15888 15888 20.871 0.41758 1 249180 21770 16175 13540 13549 26024 26024 0.006236232676656073 LFPPACHLF 9 Unmodified _LFPPACHLF_ 0 0 0 MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MER65C_dup446|chr10:74206174-74206625:-|1.0112380684301203|0.0131752979968625|6.26|151.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 522.7716674804688 2 522.770406 1043.52626 0.32312 0.00016892 0.13888 7.2603E-05 0.462 0.00024152 522.7704121861127 65.749 1.155 68.934 68.656 69.811 3.1853 135 77 2 0 0 0 0.2896 1 15928 15928 14.582 14.582 1 191100 21771 16175 13540 13549 26025 26025 0.006236232676656073 LFPPAWLP 8 Unmodified _LFPPAWLP_ 0 0 0 REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF MSMS UPN48_class_I_Rep_2 6 470.7684631347656 2 470.768189 939.521825 NaN NaN NaN NaN NaN NaN NaN 50.616 1 54.284 53.784 54.784 3.6679 0 0 0 0.40581 1 10350 10350 2.8892 0 1 + 21772 23053 13541 13550 26026 26026 0.049644821164065434 LFPRKPGK 8 Unmodified _LFPRKPGK_ 0 0 0 ENST00000606961.1_1_6:33664022-33664205:-|nuORF ENST00000606961.1_1_6:33664022-33664205:-|nuORF ENST00000606961.1_1_6:33664022-33664205:-|nuORF MSMS UPN48_class_I_Rep_2 6 471.7960205078125 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 44.179 1 47.941 47.441 48.441 3.7617 0 0 0 0.40364 1 8391 8391 5.7604 2.8712 1 21773 7688 13542 13551 26027 26027 0.10794378130606219 LFPTSCNH 8 Unmodified _LFPTSCNH_ 0 0 0 L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 459.7104797363281 2 459.710545 917.406537 0.17787 8.1768E-05 0.18934 8.7043E-05 0.36721 0.00016881 459.71052939206857 96.388 0.98718 100.17 99.751 100.74 3.7804 339 130 3 0 0 0 0.82752 1 22875 22875 5.2307 5.2307 1 6441500 21774 9569 13543 13552 26028 26028 -0.05546990076891234 LFPTSCNH 8 Unmodified _LFPTSCNH_ 0 0 0 L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 459.7106018066406 2 459.710545 917.406537 0.18354 8.4374E-05 0.14308 6.5774E-05 0.32661 0.00015015 459.71052679571903 96.42 1.1705 100.33 99.861 101.03 3.9084 384 159 3 0 0 0 0.82752 1 22861 22861 5.2307 0.47466 1 6650600 21775 9569 13543 13552 26029 26029 -0.05546990076891234 LFPTSCNH 8 Unmodified _LFPTSCNH_ 0 0 0 L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|84|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 459.710545 917.406537 0.040656 1.869E-05 0.39124 0.00017986 0.4319 0.00019855 459.71062415828703 96.62 0.99107 100.23 99.76 100.75 3.6124 -0.011062 0.00014194 NaN 5.2307 311 119 3 NaN NaN NaN NaN 0 NaN NaN 0 4878500 21776 9569 13543 13552 -0.05546990076891234 LFPTSSLAFI 10 Unmodified _LFPTSSLAFI_ 0 0 0 L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|70|2|anti-sense L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|70|2|anti-sense L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|70|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.3085327148438 2 548.307875 1094.6012 0.54139 0.00029685 -0.40239 -0.00022063 0.139 7.6217E-05 548.3076431029358 95.92 0.73717 99.685 99.392 100.13 3.7648 156 104 2 0 0 0 0.37534 1 23764 23764 21.747 1.293 1 171160 21777 9918 13544 13553 26030 26030 0.05768084279907271 LFPVGWLQ 8 Unmodified _LFPVGWLQ_ 0 0 0 ENST00000554628.5_1_14:88959357-89016761:-|nuORF;ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21 ENST00000554628.5_1_14:88959357-89016761:-|nuORF ENST00000554628.5_1_14:88959357-89016761:-|nuORF MSMS UPN46_class_I_Rep_3 1 480.2686767578125 2 480.271096 958.527639 NaN NaN NaN NaN NaN NaN NaN 70.032 1 70.032 69.532 70.532 0 0 0 0 0.40625 1 16074 16074 2.3027 0 1 21778 1079 13545 13554 26031 26031 0.04671580628075844 LFPVKFSLKTK 11 Unmodified _LFPVKFSLKTK_ 0 0 0 REV__ENSG00000139514|ENST00000380752|SLC7A1 REV__ENSG00000139514|ENST00000380752|SLC7A1 MULTI-MSMS UPN48_class_I_Rep_2 6 436.60797119140625 3 436.607708 1306.80129 0.18496 8.0756E-05 -0.31052 -0.00013558 -0.12556 -5.482E-05 436.6079342144454 59.791 0.31868 63.278 63.083 63.401 3.4868 27 24 2 0 0 0 0.66279 1 13141 13141 2.084 0.75432 1 166750 + 21779 19313 13546 13555 26032 26032 0.16016558947490012 LFPVKFSLKTK 11 Unmodified _LFPVKFSLKTK_ 0 0 0 REV__ENSG00000139514|ENST00000380752|SLC7A1 REV__ENSG00000139514|ENST00000380752|SLC7A1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 436.607708 1306.80129 0.18496 8.0756E-05 -0.31052 -0.00013558 -0.12556 -5.482E-05 436.6079342144454 59.791 0.31868 63.278 63.083 63.401 3.4868 -0.21391 -0.00020582 NaN 2.084 27 24 2 NaN NaN NaN NaN 0 NaN NaN 0 166750 + 21780 19313 13546 13555 0.16016558947490012 LFPVKFSLKTK 11 Unmodified _LFPVKFSLKTK_ 0 0 0 REV__ENSG00000139514|ENST00000380752|SLC7A1 REV__ENSG00000139514|ENST00000380752|SLC7A1 MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.607708 1306.80129 0.12139 5.3002E-05 -0.29813 -0.00013016 -0.17673 -7.7163E-05 436.6078189772403 60.023 0.091255 63.54 63.507 63.598 3.5169 0.048618 -0.00018958 NaN 2.084 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 92518 + 21781 19313 13546 13555 0.16016558947490012 LFPVKSRRIP 10 Unmodified _LFPVKSRRIP_ 0 0 0 MER68_dup1017|chr12:100331947-100332481:-|1.053967094502024|0.390490971054907|1.43|151.0|23|1|anti-sense MER68_dup1017|chr12:100331947-100332481:-|1.053967094502024|0.390490971054907|1.43|151.0|23|1|anti-sense MER68_dup1017|chr12:100331947-100332481:-|1.053967094502024|0.390490971054907|1.43|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_1 5 404.9233703613281 3 404.92403 1211.75026 NaN NaN NaN NaN NaN NaN NaN 38.974 1 42.479 41.979 42.979 3.5048 0 0 0 0.53105 1 6823 6823 1.5923 0.48253 1 21782 16193 13547 13556 26033 26033 0.15285654693320794 LFPWLKFM 8 Unmodified _LFPWLKFM_ 0 0 0 REV__L1PB1_dup6982|chr9:21845046-21846886:+|2.087200155594382|0.0702589811533972|4.89|151.0|90|2|anti-sense REV__L1PB1_dup6982|chr9:21845046-21846886:+|2.087200155594382|0.0702589811533972|4.89|151.0|90|2|anti-sense MSMS UPN46_class_I_Rep_3 1 541.2990112304688 2 541.298799 1080.58304 NaN NaN NaN NaN NaN NaN NaN 80.22 1 80.22 79.72 80.72 0 0 0 0 0.4032 1 18886 18886 6.3541 0 1 + 21783 30481 13548 13557 26034 26034 0.045976708242051245 LFQIYNKP 8 Unmodified _LFQIYNKP_ 0 0 0 REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19 REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19 MSMS UPN47_class_I_Rep_2 3 511.7710266113281 2 511.78711 1021.55967 NaN NaN NaN NaN NaN NaN NaN 26.482 1 29.977 29.477 30.477 3.4945 0 0 0 0.40625 1 3838 3838 2.3027 0.24298 1 + 21784 18410 13549 13558 26035 26035 0.049749483112123016 LFQKKHIL 8 Unmodified _LFQKKHIL_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|107|2|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|107|2|anti-sense MSMS UPN46_class_I_Rep_3 1 513.91943359375 2 513.826569 1025.63859 NaN NaN NaN NaN NaN NaN NaN 67.258 1 67.258 66.758 67.758 0 0 0 0 0.40738 1 15301 15301 0.79363 0 1 + 21785 32416 13550 13559 26036 26036 0.12679220336167418 LFQLSEQL 8 Unmodified _LFQLSEQL_ 0 0 0 nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF nc|ENSG00000135083|Q8IV13-2|CCNJL nc|ENSG00000135083|Q8IV13-2|CCNJL MSMS UPN47_class_I_Rep_2 3 489.2685852050781 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 34.498 1 37.924 37.424 38.424 3.4253 0 0 0 0.39624 1 6248 6248 9.3474 0 1 21786 6460 13551 13560 26037 26037 0.033746516946507654 LFQLSEQL 8 Unmodified _LFQLSEQL_ 0 0 0 nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF nc|ENSG00000135083|Q8IV13-2|CCNJL nc|ENSG00000135083|Q8IV13-2|CCNJL MSMS UPN47_class_I_Rep_3 4 489.2678527832031 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 34.722 1 37.986 37.486 38.486 3.2639 0 0 0 0.39624 1 6346 6346 9.3474 0 1 21787 6460 13551 13560 26038 26038 0.033746516946507654 LFQLTHLS 8 Unmodified _LFQLTHLS_ 0 0 0 REV__L1M4_dup17527|chr16:55514054-55514890:+|2.2165537943340934|0.0115356016276131|7.59|151.0|38|1|anti-sense REV__L1M4_dup17527|chr16:55514054-55514890:+|2.2165537943340934|0.0115356016276131|7.59|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.7702941894531 2 479.77146 957.528367 -0.29431 -0.0001412 -0.75987 -0.00036456 -1.0542 -0.00050576 479.770923062729 37.414 0.47976 41.08 40.847 41.327 3.6652 47 34 2 0 0 0 0.82752 1 7130 7130 7.2892 0 1 57619 + 21788 24394 13552 13561 26039 26039 0.04790375277127623 LFQPLDLLK 9 Unmodified _LFQPLDLLK_ 0 0 0 ENST00000458247.1_1_1:172717802-172718051:+|nuORF;ENSG00000144659|ENST00000650617|SLC25A38 ENST00000458247.1_1_1:172717802-172718051:+|nuORF ENST00000458247.1_1_1:172717802-172718051:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 543.831298828125 2 543.831517 1085.64848 0.38938 0.00021176 -0.31503 -0.00017132 0.074349 4.0433E-05 543.8312148500362 66.086 0.40028 69.444 69.221 69.621 3.3576 51 28 2 0 0 0 0.17897 1 15843 15843 22.736 0 1 129350 21789 3365 13553 13562 26040 26040 0.10908363550879585 LFQPLDLLK 9 Unmodified _LFQPLDLLK_ 0 0 0 ENST00000458247.1_1_1:172717802-172718051:+|nuORF;ENSG00000144659|ENST00000650617|SLC25A38 ENST00000458247.1_1_1:172717802-172718051:+|nuORF ENST00000458247.1_1_1:172717802-172718051:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 543.8319091796875 2 543.831517 1085.64848 0.38646 0.00021017 -0.11764 -6.3975E-05 0.26882 0.00014619 543.8313941610455 66.315 0.28593 69.672 69.621 69.907 3.3576 27 16 2 0 0 0 0.24936 1 15892 15892 17.113 0 1 98707 21790 3365 13553 13562 26041 26041 0.10908363550879585 LFQPLDLLK 9 Unmodified _LFQPLDLLK_ 0 0 0 ENST00000458247.1_1_1:172717802-172718051:+|nuORF;ENSG00000144659|ENST00000650617|SLC25A38 ENST00000458247.1_1_1:172717802-172718051:+|nuORF ENST00000458247.1_1_1:172717802-172718051:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 543.8314819335938 2 543.831517 1085.64848 0.42241 0.00022972 -0.0735 -3.9972E-05 0.34891 0.00018975 543.831471120171 66.421 0.89265 69.607 69.351 70.243 3.1853 96 70 2 0 0 0 0.17897 2 16038 16038;16076 22.736 0 1 159350 21791 3365 13553 13562 26042;26043 26042 0.10908363550879585 LFQPQPLYL 9 Unmodified _LFQPQPLYL_ 0 0 0 REV__nc|ENSG00000166348|Q70EL1-9|USP54 REV__nc|ENSG00000166348|Q70EL1-9|USP54 MULTI-MSMS UPN47_class_I_Rep_1 2 559.8160400390625 2 559.815867 1117.61718 0.40283 0.00022551 -0.090084 -5.043E-05 0.31275 0.00017508 559.8156786736389 75.994 1.0159 79.397 78.844 79.859 3.4034 220 94 3 0 0 0 0.35081 1 18863 18863 10.824 0 1 272630 + 21792 20171 13554 13563 26044 26044 0.06307790516780187 LFQPQPLYL 9 Unmodified _LFQPQPLYL_ 0 0 0 REV__nc|ENSG00000166348|Q70EL1-9|USP54 REV__nc|ENSG00000166348|Q70EL1-9|USP54 MULTI-MSMS UPN47_class_I_Rep_3 4 559.8160400390625 2 559.815867 1117.61718 0.45997 0.0002575 -0.061686 -3.4533E-05 0.39828 0.00022297 559.8157244838847 76.403 1.0622 79.661 79.11 80.172 3.2573 245 107 3 0 0 0 0.26948 2 19027 19027;19065 15.847 0 1 251710 + 21793 20171 13554 13563 26045;26046 26045 0.06307790516780187 LFQQNLLKG 9 Unmodified _LFQQNLLKG_ 0 0 0 L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|68|1|anti-sense;L1ME1_dup16315|chr9:41370474-41371896:-|1.5423975226110502|0.0438645829600262|5.14|150.0|68|1|anti-sense;L1ME1_dup16304|chr9:40093583-40095005:+|2.530815700881512|0.3322656576773851|2.93|151.0|68|1|anti-sense L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|68|1|anti-sense L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|68|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.8103637695312 2 530.811116 1059.60768 0.21677 0.00011506 0.058091 3.0836E-05 0.27486 0.0001459 530.8111622959432 63.68 0.67463 66.936 66.537 67.212 3.2556 83 57 2 0 0 0 0.41259 1 15170 15170 7.2892 0.56607 1 137390 21794 12246 13555 13564 26047 26047 0.08026022231297247 LFQVSLSYF 9 Unmodified _LFQVSLSYF_ 0 0 0 REV__L1MA2_dup6397|chr14:60882146-60884486:-|1.0613918632094734|0.0516729378425987|4.36|149.0|116|2|anti-sense REV__L1MA2_dup6397|chr14:60882146-60884486:-|1.0613918632094734|0.0516729378425987|4.36|149.0|116|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.2933349609375 2 552.292225 1102.5699 NaN NaN NaN NaN NaN NaN NaN 102.33 1 105.85 105.35 106.35 3.5151 0 0 0 0.38299 1 24920 24920 4.756 0 1 + 21795 24917 13556 13565 26048 26048 0.02271511245817237 LFQYSSTLK 9 Unmodified _LFQYSSTLK_ 0 0 0 Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|49|1|anti-sense Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|49|1|anti-sense Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_2 3 543.8136596679688 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 66.606 1 69.864 69.364 70.364 3.2588 0 0 0 0.35339 1 16011 16011 7.9102 0 1 21796 33154 13557 13566 26049 26049 0.036346097574551095 LFRCVLFY 8 Unmodified _LFRCVLFY_ 0 0 0 REV__L1PA15-16_dup603|chr7:134092946-134096231:+|2.106526107565021|0.4074861915124197|2.37|151.0|122|1|anti-sense REV__L1PA15-16_dup603|chr7:134092946-134096231:+|2.106526107565021|0.4074861915124197|2.37|151.0|122|1|anti-sense MSMS UPN47_class_I_Rep_1 2 530.7538452148438 2 530.786056 1059.55756 NaN NaN NaN NaN NaN NaN NaN 62.538 1 65.9 65.4 66.4 3.3616 0 0 0 0.37715 1 14740 14740 15.768 0 1 + 21797 29305 13558 13567 26050 26050 0.03016196301769014 LFRFGQFL 8 Unmodified _LFRFGQFL_ 0 0 0 THE1B-int_dup1558|chr5:71230591-71232142:+|2.7895465092023453|0.0850561880170553|5.04|151.0|10|1|sense;THE1B-int_dup1557|chr5:71212565-71214121:+|3.9423097793616098|0.0484001508069068|6.35|151.0|43|3|sense;THE1B-int_dup1556|chr5:70779453-70781005:-|5.708010657463968|0.0900873829086475|5.99|151.0|31|2|sense;THE1B-int_dup1549|chr5:69650510-69652066:+|9.117978192978276|0.0270527707168459|8.4|151.0|43|3|sense;THE1B-int_dup1497|chr5:34187312-34188853:+|15.896198661833758|0.1716485367181166|6.53|151.0|39|3|sense;THE1B-int_dup1447|chr5:21485315-21486863:-|13.353804414525374|0.2183208431327233|5.93|151.0|11|1|sense THE1B-int_dup1558|chr5:71230591-71232142:+|2.7895465092023453|0.0850561880170553|5.04|151.0|10|1|sense THE1B-int_dup1558|chr5:71230591-71232142:+|2.7895465092023453|0.0850561880170553|5.04|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.7925415039062 2 514.28982 1026.56509 0.032778 1.6858E-05 1.4942 0.00076846 1.527 0.00078532 514.7922390386564 66.802 0.30965 70.061 69.857 70.166 3.2588 28 21 2 0 0 0 0.82752 1 16084 16084 6.3541 0 1 147850 21798 32891 13559 13568 26051 26051 0.05286671893713901 LFRGEDMGW 9 Unmodified _LFRGEDMGW_ 0 0 0 ENST00000356136.7_2_11:75590984-75591038:+|nuORF ENST00000356136.7_2_11:75590984-75591038:+|nuORF ENST00000356136.7_2_11:75590984-75591038:+|nuORF MSMS UPN48_class_I_Rep_3 7 555.7566528320312 2 555.755484 1109.49641 NaN NaN NaN NaN NaN NaN NaN 59.537 1 63.054 62.554 63.554 3.5169 0 0 0 0.36505 1 13002 13002 7.2892 0 1 21799 6286 13560 13569 26052 26052 -0.05395360468310173 LFRHDRSN 8 Unmodified _LFRHDRSN_ 0 0 0 REV__AluJb_dup43144|chr6:73515442-73515639:+|1.5859866928466246|0.1582404747126743|3.33|151.0|14|2|anti-sense REV__AluJb_dup43144|chr6:73515442-73515639:+|1.5859866928466246|0.1582404747126743|3.33|151.0|14|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.2726440429688 2 522.770314 1043.52608 0.27418 0.00014334 -0.030388 -1.5886E-05 0.2438 0.00012745 522.7702431872643 65.499 1.1018 68.855 68.552 69.654 3.3557 127 66 2 0 0 0 0.82752 1 15808 15808 11.64 1.4569 1 302200 + 21800 16948 13561 13570 26053 26053 0.006053395920389448 LFRHVLWPK 9 Unmodified _LFRHVLWPK_ 0 0 0 L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|85|1|anti-sense L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|85|1|anti-sense L1M3f_dup317|chr6:158986691-158989046:-|2.2685149498084263|0.437418341335752|2.37|151.0|85|1|anti-sense MSMS UPN48_class_I_Rep_3 7 598.3584594726562 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 84.328 1 88.056 87.556 88.556 3.7281 0 0 0 0.4007 1 20010 20010 0.52476 0 1 21801 8800 13562 13571 26054 26054 0.11302000493105879 LFRIKFHALSE 11 Unmodified _LFRIKFHALSE_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|209|2|anti-sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|209|2|anti-sense MSMS UPN47_class_I_Rep_1 2 454.26513671875 3 454.262712 1359.76631 NaN NaN NaN NaN NaN NaN NaN 87.24 1 90.877 90.377 91.377 3.6372 0 0 0 0.38417 1 21794 21794 0.50596 0 1 + 21802 24952 13563 13572 26055 26055 0.10081316139576302 LFRKKKRLLLY 11 Unmodified _LFRKKKRLLLY_ 0 0 0 REV__Tigger1_dup4963|chr6:79031942-79034272:-|1.0319174586842903|0.1743907067554642|2.56|151.0|13|1|sense REV__Tigger1_dup4963|chr6:79031942-79034272:-|1.0319174586842903|0.1743907067554642|2.56|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 493.32940673828125 3 493.329168 1476.96567 NaN NaN NaN NaN NaN NaN NaN 22.239 1 25.588 25.088 26.088 3.3496 0 0 0 0.38417 1 2626 2626 0 0 1 + 21803 32460 13564 13573 26056 26056 0.2462699615814472 LFRLRFCRYIH 11 Unmodified _LFRLRFCRYIH_ 0 0 0 REV__MER21A_dup760|chr6:34319087-34320020:-|3.406771643958057|0.2147048063732457|3.99|151.0|12|2|sense REV__MER21A_dup760|chr6:34319087-34320020:-|3.406771643958057|0.2147048063732457|3.99|151.0|12|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 508.7561340332031 3 508.618724 1522.83434 0.30685 0.00015607 1.1926 0.00060657 1.4994 0.00076264 508.619243501008 41.349 0.063988 41.349 41.338 41.402 0 7 5 2 0 0 0 22.551 1 8113 8113 0.45452 0 1 143460 + 21804 31189 13565 13574 26057 26057 0.0938386251857537 LFRNSSLFL 9 Unmodified _LFRNSSLFL_ 0 0 0 REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|124|3|sense REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|124|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.8104858398438 2 548.811116 1095.60768 0.46533 0.00025538 -0.44107 -0.00024206 0.024259 1.3314E-05 548.8106394929927 64.967 0.72571 68.475 68.175 68.901 3.5077 99 53 3 0 0 0 0.21527 2 14649 14649;14706 19.257 0 1 141460 + 21805 25211 13566 13575 26058;26059 26058 0.06370022231271832 LFRNSSLFL 9 Unmodified _LFRNSSLFL_ 0 0 0 REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|124|3|sense REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|124|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 548.811116 1095.60768 0.35754 0.00019622 -1.8972 -0.0010412 -1.5397 -0.000845 548.8109101964143 65.274 0.045158 68.53 68.506 68.551 3.2556 -0.057112 -0.0017106 NaN 19.257 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 45484 + 21806 25211 13566 13575 0.06370022231271832 LFRNSSLFL 9 Unmodified _LFRNSSLFL_ 0 0 0 REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|124|3|sense REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|124|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 548.811116 1095.60768 0.56454 0.00030983 -0.24987 -0.00013713 0.31467 0.00017269 548.8107567641295 65.258 0.65041 68.712 68.418 69.069 3.4541 0.12501 9.7598E-05 NaN 19.257 87 47 3 NaN NaN NaN NaN 0 NaN NaN 0 165040 + 21807 25211 13566 13575 0.06370022231271832 LFRNSVYFV 9 Unmodified _LFRNSVYFV_ 0 0 0 REV__HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|11|2|sense REV__HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 572.8140258789062 2 572.811116 1143.60768 NaN NaN NaN NaN NaN NaN NaN 53.39 1 56.716 56.216 57.216 3.3266 0 0 0 0.2408 1 11985 11985 13.906 0.86358 1 + 21808 23390 13567 13576 26060 26060 0.041620222312758415 LFRNSVYFV 9 Unmodified _LFRNSVYFV_ 0 0 0 REV__HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|11|2|sense REV__HAL1_dup19861|chr16:71917668-71918347:-|1.9163181718934168|0.4585901914976635|2.06|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 572.8153686523438 2 572.811116 1143.60768 NaN NaN NaN NaN NaN NaN NaN 53.513 1 56.84 56.34 57.34 3.3266 0 0 0 0.36505 1 12023 12023 7.2892 1.8865 1 + 21809 23390 13567 13576 26061 26061 0.041620222312758415 LFRPFPCLL 9 Unmodified _LFRPFPCLL_ 0 0 0 L1MCa_dup2593|chr6:13672223-13673806:+|1.6732611298980031|0.027684520589516|5.92|151.0|94|2|anti-sense L1MCa_dup2593|chr6:13672223-13673806:+|1.6732611298980031|0.027684520589516|5.92|151.0|94|2|anti-sense L1MCa_dup2593|chr6:13672223-13673806:+|1.6732611298980031|0.027684520589516|5.92|151.0|94|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.3164672851562 2 553.31498 1104.61541 NaN NaN NaN NaN NaN NaN NaN 60.278 1 63.551 63.051 64.051 3.2731 0 0 0 0.36505 1 14094 14094 7.2892 0 1 21810 11786 13568 13577 26062 26062 0.06728458227212286 LFRPFPCLL 9 Unmodified _LFRPFPCLL_ 0 0 0 L1MCa_dup2593|chr6:13672223-13673806:+|1.6732611298980031|0.027684520589516|5.92|151.0|94|2|anti-sense L1MCa_dup2593|chr6:13672223-13673806:+|1.6732611298980031|0.027684520589516|5.92|151.0|94|2|anti-sense L1MCa_dup2593|chr6:13672223-13673806:+|1.6732611298980031|0.027684520589516|5.92|151.0|94|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2499389648438 2 553.31498 1104.61541 NaN NaN NaN NaN NaN NaN NaN 60.455 1 63.721 63.221 64.221 3.2654 0 0 0 0.36505 1 14147 14147 7.2892 0 1 21811 11786 13568 13577 26063 26063 0.06728458227212286 LFRPQSSVL 9 Unmodified _LFRPQSSVL_ 0 0 0 REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 523.803466796875 2 523.803291 1045.59203 0.4187 0.00021932 -0.40674 -0.00021305 0.011965 6.2675E-06 523.8030113666348 63.492 0.62849 66.95 66.503 67.131 3.4578 98 50 3 0 0 0 0.30034 1 14215 14215 13.906 1.3745 1 322650 + 21812 21818 13569 13578 26064 26064 0.07105735714230832 LFRPQSSVL 9 Unmodified _LFRPQSSVL_ 0 0 0 REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 523.3238525390625 2 523.803291 1045.59203 0.4187 0.00021932 -0.40674 -0.00021305 0.011965 6.2675E-06 523.8030113666348 63.492 0.62849 66.95 66.503 67.131 3.4578 98 50 3 0 0 0 0.078685 1 14228 14228 27.629 27.629 1 322650 + 21813 21818 13569 13578 26065 26065 0.07105735714230832 LFRPQSSVL 9 Unmodified _LFRPQSSVL_ 0 0 0 REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 523.802978515625 2 523.803291 1045.59203 0.44339 0.00023225 -0.61925 -0.00032437 -0.17586 -9.2115E-05 523.8029460897977 63.235 0.84325 66.744 66.299 67.142 3.5091 140 66 3 0 0 0 0.11355 2 14155 14034;14155 31.268 3.8321 1 585850 + 21814 21818 13569 13578 26066;26067 26067 0.07105735714230832 LFRPQSSVL 9 Unmodified _LFRPQSSVL_ 0 0 0 REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 523.803291 1045.59203 0.43058 0.00022554 -0.51997 -0.00027236 -0.089387 -4.6821E-05 523.8028673478673 63.42 0.6967 66.894 66.463 67.16 3.4738 0.031172 3.0316E-06 NaN 31.268 110 58 3 NaN NaN NaN NaN 0 NaN NaN 0 396290 + 21815 21818 13569 13578 0.07105735714230832 LFRQRFVKIS 10 Unmodified _LFRQRFVKIS_ 0 0 0 L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|57|1|anti-sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|57|1|anti-sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|57|1|anti-sense MSMS UPN47_class_I_Rep_2 3 647.3931274414062 2 647.393139 1292.77173 NaN NaN NaN NaN NaN NaN NaN 68.509 1 71.779 71.279 72.279 3.2696 0 0 0 0.53105 1 16584 16584 1.4819 0 1 21816 13374 13570 13579 26068 26068 0.1370503972204915 LFRQRFVKIS 10 Unmodified _LFRQRFVKIS_ 0 0 0 L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|57|1|anti-sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|57|1|anti-sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|57|1|anti-sense MSMS UPN48_class_I_Rep_3 7 647.8577880859375 2 647.393139 1292.77173 NaN NaN NaN NaN NaN NaN NaN 78.506 1 82.128 81.628 82.628 3.6216 0 0 0 0.53105 1 18585 18585 1.4819 0 1 21817 13374 13570 13579 26069 26069 0.1370503972204915 LFRQYLRI 8 Unmodified _LFRQYLRI_ 0 0 0 nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000497128.1_1_3:52009151-52020284:+|nuORF;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-2|ACY1 MSMS UPN47_class_I_Rep_2 3 554.8336181640625 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 89.928 1 93.385 92.885 93.885 3.4571 0 0 0 0.40746 1 22330 22330 0.69038 0 1 21818 5725 13571 13580 26070 26070 0.1057772122210281 LFRRKRLQL 9 Unmodified _LFRRKRLQL_ 0 0 0 REV__Tigger1_dup6143|chr8:25207217-25208784:+|3.220455114269463|0.0180770118319223|7.48|151.0|5|1|sense REV__Tigger1_dup6143|chr8:25207217-25208784:+|3.220455114269463|0.0180770118319223|7.48|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 615.4031372070312 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 114.84 1 118.35 117.85 118.85 3.5039 0 0 0 0.40038 1 27979 27979 0.6015 0 1 + 21819 32489 13572 13581 26071 26071 0.18280165678788762 LFRRLFSMM 9 Unmodified _LFRRLFSMM_ 0 0 0 REV__ENST00000380276.6_1_21:44515606-44515841:-|nuORF REV__ENST00000380276.6_1_21:44515606-44515841:-|nuORF MSMS UPN48_class_I_Rep_3 7 600.82275390625 2 600.822647 1199.63074 NaN NaN NaN NaN NaN NaN NaN 66 1 69.508 69.008 70.008 3.5077 0 0 0 0.38639 1 14958 14958 3.9444 0.3479 1 + 21820 22047 13573 13582 26072 26072 0.03891001752731427 LFRRRPDE 8 Unmodified _LFRRRPDE_ 0 0 0 REV__nc|ENSG00000196547|P49641-2|MAN2A2 REV__nc|ENSG00000196547|P49641-2|MAN2A2 MSMS UPN46_class_I_Rep_3 1 544.8019409179688 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 22.643 1 22.643 22.143 23.143 0 0 0 0 0.40746 1 2723 2723 0.69038 0 1 + 21821 21045 13574 13583 26073 26073 0.04838485660229708 LFRSSLVSL 9 Unmodified _LFRSSLVSL_ 0 0 0 L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.3054504394531 2 511.305667 1020.59678 0.25054 0.0001281 0.37743 0.00019298 0.62798 0.00032109 511.30578747461016 62.07 1.2253 65.438 65.113 66.338 3.3681 168 85 3 0 0 0 0.11683 1 14576 14576 30.637 0 1 305060 21822 9182 13575 13584 26074 26074 0.08730619856999056 LFRSSLVSL 9 Unmodified _LFRSSLVSL_ 0 0 0 L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.30560302734375 2 511.305667 1020.59678 0.23157 0.00011841 0.62758 0.00032088 0.85915 0.00043929 511.30590924665967 62.565 1.2922 65.734 65.255 66.547 3.1698 131 82 3 0 0 0 0.15122 1 14809 14809 25.399 0 1 292390 21823 9182 13575 13584 26075 26075 0.08730619856999056 LFRSSLVSL 9 Unmodified _LFRSSLVSL_ 0 0 0 L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|92|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 511.305667 1020.59678 0.12325 6.3021E-05 0.20493 0.00010478 0.32819 0.0001678 511.3054224906878 62.336 1.218 65.596 65.323 66.541 3.2594 0.0061758 -0.00021032 NaN 30.637 109 79 3 NaN NaN NaN NaN 0 NaN NaN 0 227890 21824 9182 13575 13584 0.08730619856999056 LFRTPGYF 8 Unmodified _LFRTPGYF_ 0 0 0 L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense MSMS UPN46_class_I_Rep_3 1 500.76495361328125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 118.95 1 118.95 118.45 119.45 0 0 0 0 0.40738 1 29546 29546 0.79363 0 1 21825 9491 13576 13585 26076 26076 0.018023926226987896 LFRTPGYF 8 Unmodified _LFRTPGYF_ 0 0 0 L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7654113769531 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 67.755 1 71.116 70.616 71.616 3.3611 0 0 0 0.40738 1 16313 16313 0.79363 0 1 21826 9491 13576 13585 26077 26077 0.018023926226987896 LFRTPGYF 8 Unmodified _LFRTPGYF_ 0 0 0 L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense MSMS UPN48_class_I_Rep_3 7 500.765869140625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 20.949 1 24.616 24.116 25.116 3.6667 0 0 0 0.40738 1 1885 1885 0.79363 0 1 21827 9491 13576 13585 26078 26078 0.018023926226987896 LFRTPGYF 8 Unmodified _LFRTPGYF_ 0 0 0 L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|169|3|anti-sense MSMS UPN48_class_I_Rep_3 7 500.7657470703125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 73.126 1 76.663 76.163 77.163 3.5373 0 0 0 0.40738 1 17094 17094 0.79363 0 1 21828 9491 13576 13585 26079 26079 0.018023926226987896 LFRVEEWA 8 Unmodified _LFRVEEWA_ 0 0 0 L1MB8_dup15661|chr20:20400729-20401209:+|1.5373377820389116|0.2667059755809414|2.53|150.0|4|1|sense L1MB8_dup15661|chr20:20400729-20401209:+|1.5373377820389116|0.2667059755809414|2.53|150.0|4|1|sense L1MB8_dup15661|chr20:20400729-20401209:+|1.5373377820389116|0.2667059755809414|2.53|150.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 525.2744140625 2 525.274367 1048.53418 NaN NaN NaN NaN NaN NaN NaN 116.72 1 120.35 119.85 120.85 3.6254 0 0 0 0.40746 1 28433 28433 0.69038 0 1 21829 10958 13577 13586 26080 26080 0.01185473788791569 LFRVPARN 8 Unmodified _LFRVPARN_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|13|1|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.7907409667969 2 486.790518 971.566484 0.13829 6.7316E-05 -0.38787 -0.00018881 -0.24958 -0.00012149 486.7903251726145 34.706 0.29488 38.378 38.153 38.448 3.6721 47 34 2 0 0 0 0.82752 1 5547 5547 2.5775 0 1 95154 + 21830 24052 13578 13587 26081 26081 0.0795630598245225 LFRWIIVF 8 Unmodified _LFRWIIVF_ 0 0 0 REV__HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|361|3|anti-sense REV__HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|361|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3330078125 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 63.434 1 66.892 66.392 67.392 3.4578 0 0 0 0.40581 1 14281 14281 2.8892 0 1 + 21831 23631 13579 13588 26082 26082 0.10580408341570546 LFRWLLKQP 9 Unmodified _LFRWLLKQP_ 0 0 0 nc|ENSG00000067992|Q15120-2|PDK3;ENSG00000067992|ENST00000379162|PDK3 nc|ENSG00000067992|Q15120-2|PDK3 nc|ENSG00000067992|Q15120-2|PDK3 MSMS UPN47_class_I_Rep_2 3 400.914794921875 3 400.913243 1199.7179 NaN NaN NaN NaN NaN NaN NaN 104.96 1 108.49 107.99 108.99 3.5327 0 0 0 0.39244 1 25476 25476 2.4985 0.75621 1 21832 1042 13580 13589 26083 26083 0.1260286729032032 LFRWVTEL 8 Unmodified _LFRWVTEL_ 0 0 0 REV__L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|17|3|sense REV__L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|17|3|sense MSMS UPN48_class_I_Rep_2 6 532.3131713867188 2 532.300384 1062.58622 NaN NaN NaN NaN NaN NaN NaN 63.652 1 67.126 66.626 67.626 3.4743 0 0 0 0.33946 1 14329 14329 24.674 5.2349 1 + 21833 25494 13581 13590 26084 26084 0.05742637202547485 LFRYLHPA 8 Unmodified _LFRYLHPA_ 0 0 0 REV__Charlie13b_dup98|chr3:185783020-185783285:+|1.2503119037881556|0.0034578599404254|8.5|149.0|6|2|sense REV__Charlie13b_dup98|chr3:185783020-185783285:+|1.2503119037881556|0.0034578599404254|8.5|149.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 508.7864685058594 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 34.292 1 34.292 33.792 34.792 0 0 0 0 0.40581 1 6105 6105 2.8892 0 1 + 21834 17285 13582 13591 26085 26085 0.05317787750925618 LFSAKGSLDLV 11 Unmodified _LFSAKGSLDLV_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|64|1|anti-sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|64|1|anti-sense MSMS UPN46_class_I_Rep_3 1 574.9490966796875 2 575.329339 1148.64412 NaN NaN NaN NaN NaN NaN NaN 77.42 1 77.42 76.92 77.92 0 0 0 0 0.38417 1 18096 18096 1.0715 0.38109 1 + 21835 26508 13583 13592 26086 26086 0.07574854337326542 LFSCEPITL 9 Unmodified _LFSCEPITL_ 0 0 0 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 MULTI-SECPEP UPN47_class_I_Rep_1 2 511.264404296875 2 511.764986 1021.51542 0.24344 0.00012458 1.3395 0.00068552 1.583 0.00081011 511.7656765395204 74.313 0.18467 77.707 77.608 77.793 3.3937 30 17 2 0 0 0 0.099402 1 18285 18285 18.135 4.6271 1 166200 21836 1683 13584 13593 26087 26087 0.005521761027239336 LFSCYSYVK 9 Unmodified _LFSCYSYVK_ 0 0 0 ENST00000390428.3_3_14:22237170-22237224:+|nuORF ENST00000390428.3_3_14:22237170-22237224:+|nuORF ENST00000390428.3_3_14:22237170-22237224:+|nuORF MSMS UPN47_class_I_Rep_3 4 555.2699584960938 2 555.270435 1108.52632 NaN NaN NaN NaN NaN NaN NaN 60.605 1 63.77 63.27 64.27 3.1651 0 0 0 0.38299 1 14243 14243 4.756 0 1 21837 6513 13585 13594 26088 26088 -0.023604215229852343 LFSDIGQYL 9 Unmodified _LFSDIGQYL_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|35|1|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|35|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 528.2733764648438 2 528.274032 1054.53351 0.29355 0.00015507 -0.088105 -4.6544E-05 0.20544 0.00010853 528.2740630222637 86.497 0.092537 89.938 89.883 89.975 3.4408 16 12 2 0 0 0 0.1154 1 21504 21504 13.042 2.9685 1 68632 + 21838 28242 13586 13595 26089 26089 0.008426343491009902 LFSDLKLRAGR 11 Unmodified _LFSDLKLRAGR_ 0 0 0 L1PA4_dup9324|chr12:11314840-11320374:+|1.2594246853580433|0.0612391185237689|4.36|151.0|219|1|anti-sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|365|3|anti-sense;L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|297|2|anti-sense;L1P1_dup647|chr3:149945302-149946320:+|1.2119197382600937|0.0545877257147934|4.47|150.0|39|1|anti-sense L1PA4_dup9324|chr12:11314840-11320374:+|1.2594246853580433|0.0612391185237689|4.36|151.0|219|1|anti-sense L1PA4_dup9324|chr12:11314840-11320374:+|1.2594246853580433|0.0612391185237689|4.36|151.0|219|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 638.8809204101562 2 638.380229 1274.7459 0.42078 0.00026862 -0.16739 -0.00010686 0.25339 0.00016176 638.3801626788667 44.16 0.6373 47.921 47.634 48.271 3.7617 72 46 2 0 0 0 0.63951 1 8337 8337 4.1895 0 1 144520 21839 13476 13587 13596 26090 26090 0.11952145479722276 LFSFMVVF 8 Unmodified _LFSFMVVF_ 0 0 0 REV__L1ME1_dup11153|chr6:15290185-15290535:-|3.16395376778022|0.0072695122366389|8.77|151.0|15|1|anti-sense REV__L1ME1_dup11153|chr6:15290185-15290535:-|3.16395376778022|0.0072695122366389|8.77|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.2610778808594 2 495.261882 988.509211 NaN NaN NaN NaN NaN NaN NaN 29.693 1 33.422 32.922 33.922 3.7286 0 0 0 0.4044 1 4194 4194 4.756 0 1 + 21840 27573 13588 13597 26091 26091 0.014497026618755626 LFSHENFQAY 10 Unmodified _LFSHENFQAY_ 0 0 0 L1MC4_dup8949|chr6:34323646-34323871:+|1.022006623338764|0.0143083399136193|6.16|151.0|12|2|anti-sense L1MC4_dup8949|chr6:34323646-34323871:+|1.022006623338764|0.0143083399136193|6.16|151.0|12|2|anti-sense L1MC4_dup8949|chr6:34323646-34323871:+|1.022006623338764|0.0143083399136193|6.16|151.0|12|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 627.7881469726562 2 628.290745 1254.56694 0.50801 0.00031917 -1.0608 -0.00066649 -0.5528 -0.00034732 628.7928065496886 51.671 0.44994 55.004 54.663 55.113 3.3332 47 21 3 0 0 0 0.84575 1 11436 11436 1.4819 0 1 75576 21841 11531 13589 13598 26092 26092 -0.0501636387898543 LFSKNSHF 8 Unmodified _LFSKNSHF_ 0 0 0 L1MB4_dup5654|chr10:87245114-87245506:+|2.092159881901759|0.2439866413901704|3.1|151.0|23|2|anti-sense L1MB4_dup5654|chr10:87245114-87245506:+|2.092159881901759|0.2439866413901704|3.1|151.0|23|2|anti-sense L1MB4_dup5654|chr10:87245114-87245506:+|2.092159881901759|0.2439866413901704|3.1|151.0|23|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.2524108886719 2 490.253434 978.492316 -0.1116 -5.4714E-05 -0.45561 -0.00022336 -0.56722 -0.00027808 490.25313464200855 35 0.73789 38.426 38.196 38.934 3.4253 78 50 2 0 0 0 0.82752 1 6377 6377 6.3541 0 1 102890 21842 10537 13590 13599 26093 26093 0.002209181002854166 LFSKTIIL 8 Unmodified _LFSKTIIL_ 0 0 0 L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|60|1|anti-sense L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|60|1|anti-sense L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|60|1|anti-sense MSMS UPN47_class_I_Rep_3 4 467.8012390136719 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 35.959 1 39.214 38.714 39.714 3.2547 0 0 0 0.40604 1 6724 6724 2.5775 0 1 21843 10463 13591 13600 26094 26094 0.12045306976426673 LFSLDSLFF 9 Unmodified _LFSLDSLFF_ 0 0 0 REV__ENSG00000204688|ENST00000377133|OR2H1 REV__ENSG00000204688|ENST00000377133|OR2H1 MSMS UPN47_class_I_Rep_2 3 544.7703857421875 2 544.786776 1087.559 NaN NaN NaN NaN NaN NaN NaN 86.926 1 90.367 89.867 90.867 3.4407 0 0 0 0.15165 1 21615 21615 19.439 0 1 + 21844 21205 13592 13601 26095 26095 0.0187210887152105 LFSLEDHEN 9 Unmodified _LFSLEDHEN_ 0 0 0 ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26 ENSG00000124215|ENST00000348616|CDH26 ENSG00000124215|ENST00000348616|CDH26 MULTI-MSMS UPN47_class_I_Rep_2 3 552.2543334960938 2 552.253828 1102.4931 0.036741 2.029E-05 -0.3938 -0.00021748 -0.35706 -0.00019719 552.253907976547 38.885 0.70147 42.264 42.035 42.736 3.3785 58 40 2 0 0 0 0.23311 1 7631 7631 18.135 0 1 122950 21845 2455 13593 13602 26096 26096 -0.05404332041325688 LFSLEDHEN 9 Unmodified _LFSLEDHEN_ 0 0 0 ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26 ENSG00000124215|ENST00000348616|CDH26 ENSG00000124215|ENST00000348616|CDH26 MULTI-MATCH UPN48_class_I_Rep_2 6 2 552.253828 1102.4931 0.45053 0.00024881 0.049635 2.7411E-05 0.50016 0.00027622 552.7570727238382 38.61 0.027767 42.327 42.303 42.331 3.7164 0.047318 0.00043148 NaN 18.135 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 32046 21846 2455 13593 13602 -0.05404332041325688 LFSLHINSF 9 Unmodified _LFSLHINSF_ 0 0 0 REV__L1MC2_dup4609|chr12:101808956-101809996:+|3.374986174448414|0.054390239808204|5.96|151.0|56|2|anti-sense REV__L1MC2_dup4609|chr12:101808956-101809996:+|3.374986174448414|0.054390239808204|5.96|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_1 2 539.288330078125 2 539.290017 1076.56548 NaN NaN NaN NaN NaN NaN NaN 54.518 1 58.019 57.519 58.519 3.5014 0 0 0 0.26661 1 12303 12303 12.532 0.89125 1 + 21847 26674 13594 13603 26097 26097 0.030260468229016624 LFSLKERKQQR 11 Unmodified _LFSLKERKQQR_ 0 0 0 REV__LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|17|2|anti-sense REV__LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|17|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 478.28387451171875 3 478.284287 1431.83103 -0.24089 -0.00011521 -0.62931 -0.00030099 -0.8702 -0.0004162 478.617977990685 13.548 0.35745 16.936 16.781 17.138 3.388 80 43 3 0 0 0 0.68478 1 372 372 0.094841 0 1 40936 + 21848 31045 13595 13604 26098 26098 0.13238890945535786 LFSLLAWVY 9 Unmodified _LFSLLAWVY_ 0 0 0 ENST00000543187.5_1_12:7168132-7170034:+|nuORF;ENST00000488701.1_1_12:7168132-7170034:+|nuORF;ENSG00000182326|ENST00000360817|C1S ENST00000543187.5_1_12:7168132-7170034:+|nuORF ENST00000543187.5_1_12:7168132-7170034:+|nuORF MSMS UPN47_class_I_Rep_2 3 556.3109741210938 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 66.883 1 70.147 69.647 70.647 3.2636 0 0 0 0.35339 1 16096 16096 7.9102 3.1541 1 21849 4947 13596 13605 26099 26099 0.06048692005128942 LFSLPLPCPA 10 Unmodified _LFSLPLPCPA_ 0 0 0 REV__ENST00000534617.5_1_11:66108392-66109705:-|nuORF REV__ENST00000534617.5_1_11:66108392-66109705:-|nuORF MSMS UPN46_class_I_Rep_3 1 529.2898559570312 2 529.291171 1056.56779 NaN NaN NaN NaN NaN NaN NaN 68.746 1 68.746 68.246 69.246 0 0 0 0 0.53105 1 15715 15715 3.9444 0 1 + 21850 22878 13597 13606 26100 26100 0.04176759236338512 LFSNSLLL 8 Unmodified _LFSNSLLL_ 0 0 0 REV__ERVL-E-int_dup7332|chr15:84702938-84704398:+|2.0601137652415744|0.0213016731837156|6.6|151.0|43|3|sense REV__ERVL-E-int_dup7332|chr15:84702938-84704398:+|2.0601137652415744|0.0213016731837156|6.6|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 453.7686767578125 2 453.768386 905.522219 -0.047594 -2.1597E-05 0.49891 0.00022639 0.45132 0.00020479 453.76844946030934 52.189 0.33253 55.522 55.299 55.631 3.3332 30 20 2 0 0 0 0.82752 1 11648 11648 8.5933 0 1 53520 + 21851 23292 13598 13607 26101 26101 0.06567857045627079 LFSPSQLSF 9 Unmodified _LFSPSQLSF_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|89|2|anti-sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|89|2|anti-sense MSMS UPN46_class_I_Rep_3 1 513.2714233398438 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 67.232 1 67.232 66.732 67.732 0 0 0 0 0.35339 1 15293 15293 7.9102 0 1 + 21852 31524 13599 13608 26102 26102 0.011666516946434058 LFSRADQLL 9 Unmodified _LFSRADQLL_ 0 0 0 REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 531.8011474609375 2 531.800749 1061.58694 0.34845 0.0001853 -0.061399 -3.2652E-05 0.28705 0.00015265 531.8005604814853 52.725 0.77777 56.245 55.97 56.748 3.5192 105 58 3 0 0 0 0.26468 2 10941 10941;10953 16.149 0 1 204040 + 21853 19090 13600 13609 26103;26104 26103 0.058614318515992636 LFSRADQLL 9 Unmodified _LFSRADQLL_ 0 0 0 REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 531.800537109375 2 531.800749 1061.58694 0.47213 0.00025108 0.068056 3.6192E-05 0.54018 0.00028727 531.8006179825297 52.708 0.75455 56.318 55.904 56.658 3.6098 75 51 2 0 0 0 0.26468 1 10897 10897 16.149 0 1 194080 + 21854 19090 13600 13609 26105 26105 0.058614318515992636 LFSRADQLL 9 Unmodified _LFSRADQLL_ 0 0 0 REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 531.80078125 2 531.800749 1061.58694 0.37224 0.00019796 -0.13913 -7.3989E-05 0.23312 0.00012397 531.8005393048089 52.651 0.69044 56.248 55.998 56.689 3.5979 73 47 2 0 0 0 0.26468 1 10867 10867 16.149 0 1 270610 + 21855 19090 13600 13609 26106 26106 0.058614318515992636 LFSRADQLL 9 Unmodified _LFSRADQLL_ 0 0 0 REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 531.800749 1061.58694 0.47213 0.00025108 0.068056 3.6192E-05 0.54018 0.00028727 531.8006179825297 52.708 0.75455 56.318 55.904 56.658 3.6098 0.047364 0.00011991 NaN 16.149 75 51 2 NaN NaN NaN NaN 0 NaN NaN 0 194080 + 21856 19090 13600 13609 0.058614318515992636 LFSRADQLL 9 Unmodified _LFSRADQLL_ 0 0 0 REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF REV__ENST00000493703.1_1_1:120465142-120466525:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 531.800749 1061.58694 0.37224 0.00019796 -0.13913 -7.3989E-05 0.23312 0.00012397 531.8005393048089 52.651 0.69044 56.248 55.998 56.689 3.5979 -0.021844 -0.00010045 NaN 16.149 73 47 2 NaN NaN NaN NaN 0 NaN NaN 0 270610 + 21857 19090 13600 13609 0.058614318515992636 LFSRCMRL 8 Unmodified _LFSRCMRL_ 0 0 0 REV__L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|105|1|anti-sense REV__L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|105|1|anti-sense MSMS UPN47_class_I_Rep_2 3 513.2708740234375 2 513.27279 1024.53103 NaN NaN NaN NaN NaN NaN NaN 62.143 1 65.402 64.902 65.902 3.2594 0 0 0 0.39819 1 14655 14655 8.5933 0.68312 1 + 21858 27832 13601 13610 26107 26107 0.01974184138794044 LFSRPSPLL 9 Unmodified _LFSRPSPLL_ 0 0 0 ENST00000324262.8_1_18:72188123-72188333:+|nuORF ENST00000324262.8_1_18:72188123-72188333:+|nuORF ENST00000324262.8_1_18:72188123-72188333:+|nuORF MSMS UPN48_class_I_Rep_1 5 515.307373046875 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 67.355 1 70.806 70.306 71.306 3.4516 0 0 0 0.13551 1 15474 15474 20.454 0 1 21859 6162 13602 13611 26108 26108 0.08870923719609891 LFSRPSPLL 9 Unmodified _LFSRPSPLL_ 0 0 0 ENST00000324262.8_1_18:72188123-72188333:+|nuORF ENST00000324262.8_1_18:72188123-72188333:+|nuORF ENST00000324262.8_1_18:72188123-72188333:+|nuORF MSMS UPN48_class_I_Rep_2 6 515.3087158203125 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 67.096 1 70.592 70.092 71.092 3.4964 0 0 0 0.22485 1 15380 15380 14.838 0 1 21860 6162 13602 13611 26109 26109 0.08870923719609891 LFSRPSPLL 9 Unmodified _LFSRPSPLL_ 0 0 0 ENST00000324262.8_1_18:72188123-72188333:+|nuORF ENST00000324262.8_1_18:72188123-72188333:+|nuORF ENST00000324262.8_1_18:72188123-72188333:+|nuORF MSMS UPN48_class_I_Rep_3 7 515.3085327148438 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 66.913 1 70.42 69.92 70.92 3.5077 0 0 0 0.22485 1 15235 15235 14.838 0 1 21861 6162 13602 13611 26110 26110 0.08870923719609891 LFSRPVPSY 9 Unmodified _LFSRPVPSY_ 0 0 0 REV__L1ME1_dup7346|chr3:195905499-195906779:+|5.3171045478171|0.442350661616108|3.59|151.0|58|2|anti-sense REV__L1ME1_dup7346|chr3:195905499-195906779:+|5.3171045478171|0.442350661616108|3.59|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 533.3082275390625 2 533.290017 1064.56548 0.33099 0.00017651 0.32683 0.00017429 0.65782 0.00035081 533.290057618371 61.926 0.45558 65.186 64.966 65.422 3.2594 46 30 3 0 0 0 0.18929 1 14660 14660 21.747 1.293 1 75329 + 21862 27796 13603 13612 26111 26111 0.03578046822894976 LFSRPVPSY 9 Unmodified _LFSRPVPSY_ 0 0 0 REV__L1ME1_dup7346|chr3:195905499-195906779:+|5.3171045478171|0.442350661616108|3.59|151.0|58|2|anti-sense REV__L1ME1_dup7346|chr3:195905499-195906779:+|5.3171045478171|0.442350661616108|3.59|151.0|58|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 533.290017 1064.56548 0.37656 0.00020082 -0.17613 -9.393E-05 0.20043 0.00010689 533.2899709189446 61.713 0.66304 65.081 64.642 65.305 3.3681 -0.061921 -0.00035181 NaN 21.747 60 48 2 NaN NaN NaN NaN 0 NaN NaN 0 88023 + 21863 27796 13603 13612 0.03578046822894976 LFSSIVLK 8 Unmodified _LFSSIVLK_ 0 0 0 REV__MER50_dup2061|chr14:45212403-45213087:+|1.8427004802504416|0.126132518747306|3.87|151.0|11|2|sense REV__MER50_dup2061|chr14:45212403-45213087:+|1.8427004802504416|0.126132518747306|3.87|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 453.7848815917969 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 52.209 1 55.542 55.042 56.042 3.3332 0 0 0 0.40364 1 11631 11631 5.7604 0 1 + 21864 31370 13604 13613 26112 26112 0.1020473394231658 LFSTLNPFS 9 Unmodified _LFSTLNPFS_ 0 0 0 REV__FLT3|Y599insY|na|na|ENSG00000122025|na|na|inframe_insertion;REV__FLT3|S584insSSDNEYFYVDFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion REV__FLT3|S584insSSDNEYFYVDFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion MSMS UPN47_class_I_Rep_2 3 513.2705078125 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 61.899 1 65.159 64.659 65.659 3.2594 0 0 0 0.26661 1 14582 14582 12.532 0 1 + 21865 23323;23322 13605 13614 26113 26113 0.011666516946434058 LFSTTPHLFQ 10 Unmodified _LFSTTPHLFQ_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|173|3|sense;L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|77|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|18|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|28|1|sense;L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|64|2|sense;L1PA4_dup6151|chr8:99738838-99744983:+|2.459492263223571|0.1152840716297733|4.42|151.0|103|2|sense;L1PA5_dup4136|chr5:169819645-169825775:+|8.923553585255526|0.1588433047896963|5.81|151.0|23|1|sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|123|3|sense;L1PA4_dup7287|chrX:75313522-75319657:-|3.1399488197313667|0.3453227966389521|3.18|151.0|90|2|sense;L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|26|2|sense;L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|84|2|sense;L1PA3_dup5686|chr9:139649-145712:+|2.487737939695242|0.4201646721703037|2.57|150.0|69|2|sense;L1PA4_dup9161|chr11:95870738-95876262:-|5.970571055268581|0.2958328859559854|4.34|151.0|137|3|sense;L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|30|1|sense;L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|138|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|13|1|sense;L1PA4_dup6324|chr9:229904-236050:-|8.974160791668695|0.0597994361629901|7.23|151.0|145|3|sense;L1PA3_dup5937|chr9:68275327-68281363:-|2.150738918218152|0.3667779995092458|2.55|151.0|109|2|sense;L1PA3_dup5886|chr9:41149959-41155994:+|2.3122735538531134|0.3903497094203575|2.57|151.0|105|2|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|28|1|sense;L1PA4_dup3915|chr5:78939283-78945425:-|2.526079700735338|0.0638439152789321|5.31|151.0|28|1|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|30|1|sense;L1PA4_dup3053|chr4:90407650-90411965:+|1.1245186469818629|0.0465955954590194|4.59|145.0|114|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|147|3|sense;L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|13|1|sense;L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|124|3|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|55|3|sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|89|2|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|8|1|sense;L1PA4_dup3409|chr4:169495542-169500000:-|1.1574191829721985|0.0617168130962013|4.23|151.0|102|3|sense;L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|111|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|24|1|sense;L1PA3_dup7963|chr11:35702779-35708923:+|1.2854097255365469|0.2499459348530521|2.36|151.0|95|2|sense;L1PA7_dup12019|chr16:74515714-74518819:+|1.4746025214023706|0.0345453665323953|5.42|148.0|41|2|sense;L1PA4_dup11339|chr19:20841022-20847152:+|1.8595397292334648|0.0751861520476965|4.63|150.0|22|1|sense;L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|22|1|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|149|3|sense;L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|27|1|sense;L1PA4_dup10402|chr14:60936234-60940365:-|2.131848364914941|0.1492138016200578|3.84|151.0|64|2|sense;L1HS_dup800|chr7:91173444-91179517:+|1.0428347067153572|0.069461906138694|3.91|151.0|15|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|173|3|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|173|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 596.154296875 2 595.813856 1189.61316 0.35634 0.00021231 -2.8729 -0.0017117 -2.5166 -0.0014994 595.8125347727471 55.378 0.19688 58.856 58.723 58.92 3.4785 13 10 2 0 0 0 0.84575 1 12568 12568 5.2969 0 1 69639 21866 8481 13606 13615 26114 26114 0.025937010230791202 LFSTTPHLFQ 10 Unmodified _LFSTTPHLFQ_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|173|3|sense;L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|77|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|18|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|28|1|sense;L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|64|2|sense;L1PA4_dup6151|chr8:99738838-99744983:+|2.459492263223571|0.1152840716297733|4.42|151.0|103|2|sense;L1PA5_dup4136|chr5:169819645-169825775:+|8.923553585255526|0.1588433047896963|5.81|151.0|23|1|sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|123|3|sense;L1PA4_dup7287|chrX:75313522-75319657:-|3.1399488197313667|0.3453227966389521|3.18|151.0|90|2|sense;L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|26|2|sense;L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|84|2|sense;L1PA3_dup5686|chr9:139649-145712:+|2.487737939695242|0.4201646721703037|2.57|150.0|69|2|sense;L1PA4_dup9161|chr11:95870738-95876262:-|5.970571055268581|0.2958328859559854|4.34|151.0|137|3|sense;L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|30|1|sense;L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|138|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|13|1|sense;L1PA4_dup6324|chr9:229904-236050:-|8.974160791668695|0.0597994361629901|7.23|151.0|145|3|sense;L1PA3_dup5937|chr9:68275327-68281363:-|2.150738918218152|0.3667779995092458|2.55|151.0|109|2|sense;L1PA3_dup5886|chr9:41149959-41155994:+|2.3122735538531134|0.3903497094203575|2.57|151.0|105|2|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|28|1|sense;L1PA4_dup3915|chr5:78939283-78945425:-|2.526079700735338|0.0638439152789321|5.31|151.0|28|1|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|30|1|sense;L1PA4_dup3053|chr4:90407650-90411965:+|1.1245186469818629|0.0465955954590194|4.59|145.0|114|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|147|3|sense;L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|13|1|sense;L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|124|3|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|55|3|sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|89|2|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|8|1|sense;L1PA4_dup3409|chr4:169495542-169500000:-|1.1574191829721985|0.0617168130962013|4.23|151.0|102|3|sense;L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|111|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|24|1|sense;L1PA3_dup7963|chr11:35702779-35708923:+|1.2854097255365469|0.2499459348530521|2.36|151.0|95|2|sense;L1PA7_dup12019|chr16:74515714-74518819:+|1.4746025214023706|0.0345453665323953|5.42|148.0|41|2|sense;L1PA4_dup11339|chr19:20841022-20847152:+|1.8595397292334648|0.0751861520476965|4.63|150.0|22|1|sense;L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|22|1|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|149|3|sense;L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|27|1|sense;L1PA4_dup10402|chr14:60936234-60940365:-|2.131848364914941|0.1492138016200578|3.84|151.0|64|2|sense;L1HS_dup800|chr7:91173444-91179517:+|1.0428347067153572|0.069461906138694|3.91|151.0|15|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|173|3|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|173|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 595.813856 1189.61316 0.41512 0.00024734 -2.4363 -0.0014516 -2.0211 -0.0012042 595.8122641929751 55.755 0.39827 58.932 58.848 59.246 3.1779 0.038025 0.00026915 NaN 5.2969 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 79105 21867 8481 13606 13615 0.025937010230791202 LFTDGEYINQ 10 Unmodified _LFTDGEYINQ_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS UPN47_class_I_Rep_1 2 600.3006591796875 2 600.282586 1198.55062 NaN NaN NaN NaN NaN NaN NaN 54.684 1 58.185 57.685 58.685 3.5014 0 0 0 0.53105 1 12354 12354 3.5965 0 1 21868 703 13607 13616 26115 26115 -0.040714898357464335 LFTEDGRAF 9 Unmodified _LFTEDGRAF_ 0 0 0 ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|123|2|anti-sense ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|123|2|anti-sense ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|123|2|anti-sense MSMS UPN47_class_I_Rep_3 4 528.270751953125 2 528.261456 1054.50836 NaN NaN NaN NaN NaN NaN NaN 55.632 1 58.81 58.31 59.31 3.1779 0 0 0 0.26661 1 12728 12728 12.532 2.3482 1 21869 7767 13608 13617 26116 26116 -0.016714204534764576 LFTITSLAL 9 Unmodified _LFTITSLAL_ 0 0 0 REV__ERVL-E-int_dup315|chr1:84537178-84538808:+|4.460123567141673|0.1357230369868221|5.04|151.0|91|2|anti-sense REV__ERVL-E-int_dup315|chr1:84537178-84538808:+|4.460123567141673|0.1357230369868221|5.04|151.0|91|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.7974548339844 2 489.797143 977.579734 0.26751 0.00013103 -0.35815 -0.00017542 -0.090632 -4.4391E-05 489.79678893849257 83.763 0.25827 87.491 87.278 87.537 3.7281 42 31 2 0 0 0 0.40174 1 19830 19830 7.9102 0 1 71781 + 21870 23279 13609 13618 26117 26117 0.09004699251181592 LFTKLNLL 8 Unmodified _LFTKLNLL_ 0 0 0 L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|5|1|sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|5|1|sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7878723144531 2 481.307678 960.600803 -0.12494 -6.0133E-05 -0.28635 -0.00013782 -0.41129 -0.00019796 481.3074616019486 43.367 0.69788 46.725 46.322 47.02 3.358 58 47 2 0 0 0 0.82752 1 9018 9018 4.756 0 1 88137 21871 11088 13610 13619 26118 26118 0.1189270935069544 LFTKNNEI 8 Unmodified _LFTKNNEI_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13 REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13 MULTI-MSMS UPN47_class_I_Rep_2 3 489.7661437988281 2 489.766374 977.518196 -0.11643 -5.7025E-05 -1.4878 -0.00072865 -1.6042 -0.00078568 489.76553306313764 34.588 0.56686 38.013 37.787 38.354 3.4253 63 38 2 0 0 0 0.82752 1 6329 6329 16.942 0 1 138650 + 21872 20689 13611 13620 26119 26119 0.028537675519032746 LFTVTTLI 8 Unmodified _LFTVTTLI_ 0 0 0 REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|28|3|anti-sense REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_2 3 454.27911376953125 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 52.067 1 55.4 54.9 55.9 3.3332 0 0 0 0.40581 1 11587 11587 2.8892 0 1 + 21873 17350 13612 13621 26120 26120 0.08561027705434299 LFTVTTLI 8 Unmodified _LFTVTTLI_ 0 0 0 REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|28|3|anti-sense REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_3 4 454.27935791015625 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 52.25 1 55.456 54.956 55.956 3.2055 0 0 0 0.40581 1 11696 11696 2.8892 0 1 + 21874 17350 13612 13621 26121 26121 0.08561027705434299 LFTVTTLI 8 Unmodified _LFTVTTLI_ 0 0 0 REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|28|3|anti-sense REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2801818847656 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 52.946 1 56.141 55.641 56.641 3.1948 0 0 0 0.40738 1 11903 11903 0.79363 0 1 + 21875 17350 13612 13621 26122 26122 0.08561027705434299 LFTVWKHSSG 10 Unmodified _LFTVWKHSSG_ 0 0 0 ENSG00000230178|ENST00000456475|OR4F3;ENSG00000182854|ENST00000332238|OR4F15;ENSG00000176269|ENST00000320901|OR4F21 ENSG00000230178|ENST00000456475|OR4F3 ENSG00000230178|ENST00000456475|OR4F3 MULTI-MSMS UPN47_class_I_Rep_2 3 581.3060913085938 2 581.306198 1160.59784 0.50128 0.0002914 0.19077 0.00011089 0.69205 0.00040229 581.3064269470433 59.68 0.55677 62.953 62.7 63.257 3.2731 60 36 2 0 0 0 0.56155 1 13968 13968 2.7352 0 1 103080 21876 4755 13613 13622 26123 26123 0.023968342258967823 LFTYDYLIQG 10 Unmodified _LFTYDYLIQG_ 0 0 0 REV__L1MB4_dup1590|chr3:52598171-52598576:-|1.0175350457724577|0.0503201936153695|4.34|151.0|3|1|sense REV__L1MB4_dup1590|chr3:52598171-52598576:-|1.0175350457724577|0.0503201936153695|4.34|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 616.81201171875 2 616.813522 1231.61249 NaN NaN NaN NaN NaN NaN NaN 46.487 1 49.731 49.231 50.231 3.2439 0 0 0 0.53105 1 9949 9949 1.4819 0.28856 1 + 21877 25942 13614 13623 26124 26124 0.005948615833858639 LFVALWTVY 9 Unmodified _LFVALWTVY_ 0 0 0 REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|57|2|anti-sense REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_2 3 556.3109130859375 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 65.232 1 68.487 67.987 68.987 3.2556 0 0 0 0.38299 1 15594 15594 4.756 0 1 + 21878 30758 13615 13624 26125 26125 0.06048692005106204 LFVATKTQ 8 Unmodified _LFVATKTQ_ 0 0 0 REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 454.2661437988281 2 454.26601 906.517468 -0.51096 -0.00023211 0.13986 6.3535E-05 -0.37109 -0.00016857 454.26597808296214 22.971 0.49632 26.416 26.21 26.707 3.4447 48 41 2 0 0 0 0.82752 1 2834 2834 0.79363 0 1 50168 + 21879 21383 13616 13625 26126 26126 0.06046972902856851 LFVDPLAIKHI 11 Unmodified _LFVDPLAIKHI_ 0 0 0 L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.92669677734375 3 422.592058 1264.75434 0.027576 1.1653E-05 0.62422 0.00026379 0.65179 0.00027544 422.59231441616146 60.054 0.074738 60.054 59.985 60.06 0 11 8 2 0 0 0 0.67113 1 13299 13299 1.3296 0.63198 1 228790 21880 9585 13617 13626 26127 26127 0.13255699396381715 LFVDPLAIKHI 11 Unmodified _LFVDPLAIKHI_ 0 0 0 L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense MSMS UPN48_class_I_Rep_2 6 422.5923156738281 3 422.592058 1264.75434 NaN NaN NaN NaN NaN NaN NaN 50.493 1 54.187 53.687 54.687 3.6946 0 0 0 0.38417 1 10313 10313 2.6312 0.13275 1 21881 9585 13617 13626 26128 26128 0.13255699396381715 LFVDPLAIKHI 11 Unmodified _LFVDPLAIKHI_ 0 0 0 L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592058 1264.75434 -0.025498 -1.0775E-05 1.1497 0.00048584 1.1242 0.00047506 422.5926343418969 56.684 0.052078 60.141 60.101 60.153 3.4572 0.017013 2.6833E-05 NaN 1.3296 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 91392 21882 9585 13617 13626 0.13255699396381715 LFVDPLAIKHI 11 Unmodified _LFVDPLAIKHI_ 0 0 0 L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592058 1264.75434 -0.64631 -0.00027313 1.3682 0.00057818 0.72187 0.00030506 422.592662194199 57.011 0.095379 60.183 60.105 60.2 3.1721 0.058682 0.00030387 NaN 1.3296 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 137740 21883 9585 13617 13626 0.13255699396381715 LFVDPLAIKHI 11 Unmodified _LFVDPLAIKHI_ 0 0 0 L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|167|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 422.592058 1264.75434 0.018426 7.7866E-06 1.0544 0.00044558 1.0728 0.00045337 422.5924851741856 56.576 0.21161 60.119 60.028 60.24 3.5427 -0.0053405 -9.3942E-05 NaN 1.3296 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 311350 21884 9585 13617 13626 0.13255699396381715 LFVFKEDP 8 Unmodified _LFVFKEDP_ 0 0 0 REV__L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense REV__L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.7657775878906 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 26.552 1 30.119 29.619 30.619 3.5667 0 0 0 0.40738 1 3278 3278 0.79363 0 1 + 21885 24726 13618 13627 26129 26129 0.020115531829901556 LFVFKEDP 8 Unmodified _LFVFKEDP_ 0 0 0 REV__L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense REV__L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.76422119140625 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 112.44 1 116.07 115.57 116.57 3.6321 0 0 0 0.40738 1 27287 27287 0.79363 0 1 + 21886 24726 13618 13627 26130 26130 0.020115531829901556 LFVFLLLSWK 10 Unmodified _LFVFLLLSWK_ 0 0 0 L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|62|3|anti-sense L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|62|3|anti-sense L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|62|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.3692016601562 2 633.38646 1264.75837 0.63895 0.0004047 0.52307 0.00033131 1.162 0.00073601 633.3865467320203 86.156 0.36069 89.926 89.741 90.102 3.7701 74 43 2 0 0 0 0.55993 1 20464 20464 1.6526 0 1 116270 21887 10647 13619 13628 26131 26131 0.13657788890077427 LFVFVVVHF 9 Unmodified _LFVFVVVHF_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|391|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|391|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|391|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.8217163085938 2 553.823495 1105.63244 NaN NaN NaN NaN NaN NaN NaN 73.867 1 77.103 76.603 77.603 3.2363 0 0 0 0.22893 1 18263 18263 14.582 0 1 21888 13659 13620 13629 26132 26132 0.08384702104649477 LFVFYAHAI 9 Unmodified _LFVFYAHAI_ 0 0 0 REV__Tigger1_dup6468|chr8:99132196-99134051:-|3.1827868259217684|0.1437128284476932|4.47|151.0|2|1|sense REV__Tigger1_dup6468|chr8:99132196-99134051:-|3.1827868259217684|0.1437128284476932|4.47|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.7975463867188 2 540.797478 1079.5804 0.34932 0.00018891 -0.30036 -0.00016243 0.048965 2.648E-05 540.7971427450263 80.363 0.14994 80.363 80.322 80.472 0 20 14 2 0 0 0 0.37662 1 18945 18945 9.3474 0 1 196750 + 21889 32499 13621 13630 26133 26133 0.04379538690886875 LFVHSCDD 8 Unmodified _LFVHSCDD_ 0 0 0 L1MB3_dup12559|chr13:50053336-50054297:-|3.468787714727966|0.1095416617541775|4.98|151.0|38|1|anti-sense L1MB3_dup12559|chr13:50053336-50054297:-|3.468787714727966|0.1095416617541775|4.98|151.0|38|1|anti-sense L1MB3_dup12559|chr13:50053336-50054297:-|3.468787714727966|0.1095416617541775|4.98|151.0|38|1|anti-sense MSMS UPN46_class_I_Rep_3 1 468.19940185546875 2 468.20001 934.385467 NaN NaN NaN NaN NaN NaN NaN 72.474 1 72.474 71.974 72.974 0 0 0 0 0.40738 1 16754 16754 0.79363 0.10326 1 21890 10331 13622 13631 26134 26134 -0.08435000176416452 LFVIASNDPL 10 Unmodified _LFVIASNDPL_ 0 0 0 L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|95|1|anti-sense L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|95|1|anti-sense L1MA5_dup2508|chr9:120632187-120634446:-|5.008759840669291|0.2604432454298462|4.27|151.0|95|1|anti-sense MSMS UPN46_class_I_Rep_3 1 544.815673828125 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 14.058 1 14.058 13.558 14.558 0 0 0 0 0.53105 1 540 540 1.1933 0 1 21891 9889 13623 13632 26135 26135 0.05106896274514838 LFVIIRYQR 9 Unmodified _LFVIIRYQR_ 0 0 0 REV__ENSG00000116539.14,ASH1L,chr1,-,I11.1,155380132,155395458|32|13.42|1|intron REV__ENSG00000116539.14,ASH1L,chr1,-,I11.1,155380132,155395458|32|13.42|1|intron MSMS UPN47_class_I_Rep_3 4 604.3670654296875 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 97.823 1 101.24 100.74 101.74 3.4216 0 0 0 0.40038 1 24236 24236 0.6015 0 1 + 21892 18605 13624 13633 26136 26136 0.12861965801948827 LFVIIRYQR 9 Unmodified _LFVIIRYQR_ 0 0 0 REV__ENSG00000116539.14,ASH1L,chr1,-,I11.1,155380132,155395458|32|13.42|1|intron REV__ENSG00000116539.14,ASH1L,chr1,-,I11.1,155380132,155395458|32|13.42|1|intron MSMS UPN48_class_I_Rep_1 5 604.3677368164062 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 107.15 1 110.78 110.28 111.28 3.6299 0 0 0 0.40038 1 25814 25814 0.6015 0 1 + 21893 18605 13624 13633 26137 26137 0.12861965801948827 LFVISLFVF 9 Unmodified _LFVISLFVF_ 0 0 0 L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|39|3|sense L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|39|3|sense L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 542.824462890625 2 542.825704 1083.63685 NaN NaN NaN NaN NaN NaN NaN 62.491 1 65.965 65.465 66.465 3.4738 0 0 0 0.34056 1 13970 13970 8.5933 0 1 21894 10462 13625 13634 26138 26138 0.09838166527538306 LFVNKVWLH 9 Unmodified _LFVNKVWLH_ 0 0 0 REV__nc|ENSG00000117400|P40238-2|MPL REV__nc|ENSG00000117400|P40238-2|MPL MSMS UPN46_class_I_Rep_3 1 578.3388061523438 2 578.337301 1154.66005 NaN NaN NaN NaN NaN NaN NaN 64.255 1 64.255 63.755 64.755 0 0 0 0 0.39428 1 14453 14453 2.0598 0.21551 1 + 21895 18633 13626 13635 26139 26139 0.08890605364877047 LFVNLKYV 8 Unmodified _LFVNLKYV_ 0 0 0 L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|148|3|anti-sense L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|148|3|anti-sense L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|148|3|anti-sense MSMS UPN47_class_I_Rep_2 3 498.29962158203125 2 498.299853 994.585153 NaN NaN NaN NaN NaN NaN NaN 55.856 1 59.166 58.666 59.666 3.3102 0 0 0 0.40404 1 12740 12740 5.2307 0 1 21896 13410 13627 13636 26140 26140 0.08764422833644403 LFVPFYYFF 9 Unmodified _LFVPFYYFF_ 0 0 0 L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|256|2|anti-sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|256|2|anti-sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|256|2|anti-sense MSMS UPN48_class_I_Rep_2 6 621.8157958984375 2 621.815336 1241.61612 NaN NaN NaN NaN NaN NaN NaN 26.782 1 30.413 29.913 30.913 3.6311 0 0 0 0.40038 1 3458 3458 0.6015 0 1 21897 15434 13628 13637 26141 26141 0.004975761478817731 LFVPKLLQ 8 Unmodified _LFVPKLLQ_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MSMS UPN48_class_I_Rep_1 5 479.30889892578125 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 54.603 1 58.117 57.617 58.617 3.5143 0 0 0 0.40625 1 11577 11577 2.3027 0 1 + 21898 32091 13629 13638 26142 26142 0.12585013213322327 LFVPKLLQ 8 Unmodified _LFVPKLLQ_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MSMS UPN48_class_I_Rep_1 5 479.3088684082031 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 63.413 1 66.87 66.37 67.37 3.4578 0 0 0 0.40625 1 14274 14274 2.3027 0 1 + 21899 32091 13629 13638 26143 26143 0.12585013213322327 LFVPKLLQ 8 Unmodified _LFVPKLLQ_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MSMS UPN48_class_I_Rep_3 7 479.30877685546875 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 50.743 1 54.355 53.855 54.855 3.6127 0 0 0 0.40404 1 10327 10327 5.2307 0 1 + 21900 32091 13629 13638 26144 26144 0.12585013213322327 LFVPLLFL 8 Unmodified _LFVPLLFL_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|128|3|anti-sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|128|3|anti-sense MSMS UPN47_class_I_Rep_2 3 481.30755615234375 2 481.30969 960.604826 NaN NaN NaN NaN NaN NaN NaN 43.171 1 46.529 46.029 47.029 3.358 0 0 0 0.39167 1 8878 8878 11.114 0 1 + 21901 25249 13630 13639 26145 26145 0.1229479884441389 LFVPLLFL 8 Unmodified _LFVPLLFL_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|128|3|anti-sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|128|3|anti-sense MSMS UPN47_class_I_Rep_2 3 481.7709655761719 2 481.30969 960.604826 NaN NaN NaN NaN NaN NaN NaN 43.726 1 47.083 46.583 47.583 3.358 0 0 0 0.40581 1 9048 9048 2.8892 0 1 + 21902 25249 13630 13639 26146 26146 0.1229479884441389 LFVPLLFL 8 Unmodified _LFVPLLFL_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|128|3|anti-sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|128|3|anti-sense MSMS UPN47_class_I_Rep_3 4 481.30780029296875 2 481.30969 960.604826 NaN NaN NaN NaN NaN NaN NaN 43.801 1 47.043 46.543 47.543 3.2419 0 0 0 0.40581 1 9124 9124 2.8892 0 1 + 21903 25249 13630 13639 26147 26147 0.1229479884441389 LFVPPMRS 8 Unmodified _LFVPPMRS_ 0 0 0 REV__THE1B-int_dup976|chr4:154285-155826:+|1.3611089698850556|0.1172561311684125|3.54|142.0|104|3|anti-sense REV__THE1B-int_dup976|chr4:154285-155826:+|1.3611089698850556|0.1172561311684125|3.54|142.0|104|3|anti-sense MSMS UPN46_class_I_Rep_3 1 473.76171875 2 473.762581 945.510608 NaN NaN NaN NaN NaN NaN NaN 47.966 1 47.966 47.466 48.466 0 0 0 0 0.4032 1 9956 9956 6.3541 0 1 + 21904 32278 13631 13640 26148 26148 0.035673367506319664 LFVPVLIKK 9 Unmodified _LFVPVLIKK_ 0 0 0 L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|206|2|anti-sense L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|206|2|anti-sense L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|206|2|anti-sense MSMS UPN46_class_I_Rep_3 1 528.8171997070312 2 528.862621 1055.71069 NaN NaN NaN NaN NaN NaN NaN 68.264 1 68.264 67.764 68.764 0 0 0 0 0.39326 1 15577 15577 2.3027 0 1 21905 9469 13632 13641 26149 26149 0.1850613468989195 LFVQILLL 8 Unmodified _LFVQILLL_ 0 0 0 L1MC1_dup6001|chr7:67127460-67128690:-|1.0470211447767872|0.0186130673828312|5.81|151.0|79|3|anti-sense;L1MC1_dup6020|chr7:72683596-72684828:+|1.0454108749426307|0.0270968087784659|5.27|151.0|55|1|anti-sense L1MC1_dup6001|chr7:67127460-67128690:-|1.0470211447767872|0.0186130673828312|5.81|151.0|79|3|anti-sense L1MC1_dup6001|chr7:67127460-67128690:-|1.0470211447767872|0.0186130673828312|5.81|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_2 3 479.7975769042969 2 479.820421 957.62629 NaN NaN NaN NaN NaN NaN NaN 17.707 1 21.094 20.594 21.594 3.387 0 0 0 0.40738 1 1373 1373 0.79363 0 1 21906 11177 13633 13642 26150 26150 0.14578183873152284 LFVQLIVF 8 Unmodified _LFVQLIVF_ 0 0 0 HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|154|3|anti-sense HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|154|3|anti-sense HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|154|3|anti-sense MSMS UPN47_class_I_Rep_3 4 489.80682373046875 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 87.487 1 90.875 90.375 91.375 3.3873 0 0 0 0.40604 1 21923 21923 2.5775 0 1 21907 8280 13634 13643 26151 26151 0.105296108390462 LFVRRALT 8 Unmodified _LFVRRALT_ 0 0 0 REV__nc|ENSG00000164674|Q4VX76-2|SYTL3 REV__nc|ENSG00000164674|Q4VX76-2|SYTL3 MSMS UPN48_class_I_Rep_3 7 488.7809753417969 2 488.308544 974.602535 NaN NaN NaN NaN NaN NaN NaN 57.738 1 61.269 60.769 61.769 3.5317 0 0 0 0.40643 1 12448 12448 2.0598 0 1 + 21908 20074 13635 13644 26152 26152 0.1142176315930783 LFVRVRKRLVR 11 Unmodified _LFVRVRKRLVR_ 0 0 0 REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|189|3|anti-sense REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|189|3|anti-sense MSMS UPN48_class_I_Rep_1 5 481.3242492675781 3 481.324528 1440.95176 NaN NaN NaN NaN NaN NaN NaN 113.16 1 116.79 116.29 117.29 3.6314 0 0 0 0.38417 1 27484 27484 0.094841 0 1 + 21909 23757 13636 13645 26153 26153 0.24891763449659265 LFVSFLCI 8 Unmodified _LFVSFLCI_ 0 0 0 L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|90|2|anti-sense L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|90|2|anti-sense L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|90|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 470.76068115234375 2 471.261882 940.509211 0.15729 7.4123E-05 -0.11483 -5.4113E-05 0.042461 2.001E-05 471.26173188653996 56.098 0.45618 56.098 55.942 56.399 0 85 57 2 0 0 0 0.72333 1 12283 12283 6.3541 0 1 261990 21910 9942 13637 13646 26154 26154 0.03657702661860185 LFVSNSSTY 9 Unmodified _LFVSNSSTY_ 0 0 0 REV__L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|65|1|anti-sense REV__L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|65|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.2485656738281 2 509.248015 1016.48148 0.14234 7.2488E-05 0.041552 2.116E-05 0.1839 9.3649E-05 509.2479257839884 33.806 0.87643 33.806 33.513 34.39 0 142 65 3 0 0 0 0.28552 1 6076 6076 14.838 0 1 281590 + 21911 28672 13638 13647 26155 26155 -0.0261052906465693 LFVTQKII 8 Unmodified _LFVTQKII_ 0 0 0 L1MA2_dup126|chr1:66965521-66966048:-|1.8289817343298456|0.1076802806363082|4.09|151.0|11|2|sense L1MA2_dup126|chr1:66965521-66966048:-|1.8289817343298456|0.1076802806363082|4.09|151.0|11|2|sense L1MA2_dup126|chr1:66965521-66966048:-|1.8289817343298456|0.1076802806363082|4.09|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 481.3258361816406 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 40.533 1 44.205 43.705 44.705 3.6719 0 0 0 0.40292 1 8048 8048 6.7232 0 1 21912 9331 13639 13648 26156 26156 0.1189270935069544 LFVTQKII 8 Unmodified _LFVTQKII_ 0 0 0 L1MA2_dup126|chr1:66965521-66966048:-|1.8289817343298456|0.1076802806363082|4.09|151.0|11|2|sense L1MA2_dup126|chr1:66965521-66966048:-|1.8289817343298456|0.1076802806363082|4.09|151.0|11|2|sense L1MA2_dup126|chr1:66965521-66966048:-|1.8289817343298456|0.1076802806363082|4.09|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 481.3072509765625 2 481.307678 960.600803 NaN NaN NaN NaN NaN NaN NaN 43.594 1 46.952 46.452 47.452 3.358 0 0 0 0.40292 1 9008 9008 6.7232 0 1 21913 9331 13639 13648 26157 26157 0.1189270935069544 LFVVLFFF 8 Unmodified _LFVVLFFF_ 0 0 0 REV__L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|116|2|anti-sense REV__L1MB2_dup6033|chr12:62509424-62511816:+|4.610016221385853|0.196316047558151|4.55|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.3001708984375 2 516.301865 1030.58918 NaN NaN NaN NaN NaN NaN NaN 33.022 1 36.712 36.212 37.212 3.6896 0 0 0 0.40738 1 5081 5081 0.79363 0 1 + 21914 25755 13640 13649 26158 26158 0.07510512327348806 LFVYFYFK 8 Unmodified _LFVYFYFK_ 0 0 0 L1PA8_dup7399|chr17:62047385-62047732:+|1.6318296067023028|0.0091777151084813|7.47|151.0|16|2|anti-sense L1PA8_dup7399|chr17:62047385-62047732:+|1.6318296067023028|0.0091777151084813|7.47|151.0|16|2|anti-sense L1PA8_dup7399|chr17:62047385-62047732:+|1.6318296067023028|0.0091777151084813|7.47|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_3 7 563.8048706054688 2 563.802229 1125.5899 NaN NaN NaN NaN NaN NaN NaN 35.266 1 38.938 38.438 39.438 3.6721 0 0 0 0.4044 1 5697 5697 4.756 1.4747 1 21915 14959 13641 13650 26159 26159 0.03213306976408603 LFVYYWCI 8 Unmodified _LFVYYWCI_ 0 0 0 L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|192|1|anti-sense;L1PA7_dup2553|chr3:138562045-138566828:+|1.7922824318484605|0.0652053316915161|4.78|151.0|159|1|anti-sense;L1PA7_dup1254|chr2:99129770-99135377:-|1.1426404863493416|0.2891141190467196|1.98|151.0|304|3|anti-sense;L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|271|2|anti-sense;L1PA7_dup2524|chr3:132613922-132615818:+|1.0662020264099603|0.1036392319404329|3.36|151.0|126|3|anti-sense;L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|207|1|anti-sense;L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|180|3|anti-sense;L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|327|3|anti-sense;L1PA7_dup2207|chr3:71666960-71669417:+|1.079509951158259|0.0277798458065804|5.28|148.0|101|1|anti-sense;L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|289|3|anti-sense;L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|335|3|anti-sense;L1PA8_dup4862|chrX:75307836-75311156:-|1.463389533687761|0.1063279983357985|3.78|151.0|161|2|anti-sense;L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|327|3|anti-sense;L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|318|3|anti-sense;L1PA7_dup6899|chr8:99203069-99205514:+|2.670334275946741|0.1334319480403713|4.32|151.0|146|3|anti-sense;L1PA7_dup5909|chr7:26833414-26837339:+|1.6717486449548482|0.0446689248197687|5.23|149.0|213|3|anti-sense;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|329|3|anti-sense;L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|84|2|anti-sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|222|2|anti-sense;L1PA7_dup4895|chr5:177661089-177664032:+|2.420336929456497|0.1200775470443225|4.33|151.0|174|3|anti-sense;L1PA7_dup4887|chr5:176246616-176249558:-|1.6170296608019077|0.110971524901053|3.87|151.0|172|3|anti-sense;L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|144|1|anti-sense;L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|269|2|anti-sense;L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|335|3|anti-sense;L1P3_dup1479|chr7:26764850-26770911:-|5.103617207130673|0.0628493276076669|6.34|151.0|254|2|anti-sense;L1P3_dup1599|chr7:139677735-139679256:-|1.7249461560240875|0.4980709827695084|1.79|151.0|70|2|anti-sense;L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|191|3|anti-sense;L1PA5_dup5242|chr7:114990351-114995897:-|5.052159401470676|0.1464154544109933|5.11|151.0|237|2|anti-sense;L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|261|2|anti-sense;L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|197|1|anti-sense;L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|53|1|anti-sense;L1PA6_dup577|chr2:63530724-63536624:+|1.3513547856132109|0.0493140872131978|4.78|151.0|258|2|anti-sense;L1PA6_dup815|chr2:189714968-189718098:+|1.91610006915306|0.1132053707647428|4.08|151.0|146|2|anti-sense;L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|150|2|anti-sense;L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|343|3|anti-sense;L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|334|3|anti-sense;L1P2_dup936|chrX:56103031-56107860:-|1.4124793606161694|0.068103895694995|4.37|151.0|261|3|anti-sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|226|1|anti-sense L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|192|1|anti-sense L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|192|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.7720336914062 2 553.772614 1105.53067 NaN NaN NaN NaN NaN NaN NaN 56.968 1 60.269 59.769 60.769 3.3009 0 0 0 0.4032 1 13081 13081 6.3541 0 1 21916 13510 13642 13651 26160 26160 -0.01786912309444233 LFWCPYMV 8 Unmodified _LFWCPYMV_ 0 0 0 REV__L1MC3_dup9535|chr12:111419651-111419988:-|2.2984114139603333|0.0572081114287348|5.33|151.0|12|3|sense REV__L1MC3_dup9535|chr12:111419651-111419988:-|2.2984114139603333|0.0572081114287348|5.33|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 529.7455444335938 2 529.745542 1057.47653 NaN NaN NaN NaN NaN NaN NaN 117.17 1 120.66 120.16 121.16 3.4891 0 0 0 0.40738 1 28624 28624 0.79363 0 1 + 21917 26794 13643 13652 26161 26161 -0.049908277326267125 LFWDLYYF 8 Unmodified _LFWDLYYF_ 0 0 0 L1MB2_dup789|chr2:62918824-62920662:+|1.1518237645606628|0.0418358948000127|4.78|151.0|88|2|anti-sense L1MB2_dup789|chr2:62918824-62920662:+|1.1518237645606628|0.0418358948000127|4.78|151.0|88|2|anti-sense L1MB2_dup789|chr2:62918824-62920662:+|1.1518237645606628|0.0418358948000127|4.78|151.0|88|2|anti-sense MSMS UPN46_class_I_Rep_3 1 583.7800903320312 2 583.781493 1165.54843 NaN NaN NaN NaN NaN NaN NaN 76.502 1 76.502 76.002 77.002 0 0 0 0 0.40581 1 17848 17848 2.8892 0 1 21918 10290 13644 13653 26162 26162 -0.0277187378292183 LFWESLHAS 9 Unmodified _LFWESLHAS_ 0 0 0 L1M2_dup7126|chr12:76493308-76494331:-|1.227026890096389|0.0241071108297853|5.67|151.0|56|2|anti-sense L1M2_dup7126|chr12:76493308-76494331:-|1.227026890096389|0.0241071108297853|5.67|151.0|56|2|anti-sense L1M2_dup7126|chr12:76493308-76494331:-|1.227026890096389|0.0241071108297853|5.67|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_1 2 545.2716064453125 2 545.271824 1088.5291 NaN NaN NaN NaN NaN NaN NaN 92.68 1 96.401 95.901 96.901 3.7209 0 0 0 0.26661 1 23084 23084 12.532 4.6214 1 21919 8704 13645 13654 26163 26163 -0.011628300738266262 LFWHCSASYL 10 Unmodified _LFWHCSASYL_ 0 0 0 REV__MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|2|1|sense REV__MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 613.7880249023438 2 613.786784 1225.55902 NaN NaN NaN NaN NaN NaN NaN 58.52 1 62.007 61.507 62.507 3.487 0 0 0 0.53105 1 12776 12776 3.5965 0 1 + 21920 31201 13646 13655 26164 26164 -0.04474214400102028 LFWKLCWM 8 Unmodified _LFWKLCWM_ 0 0 0 ENSG00000134207|ENST00000610222|SYT6 ENSG00000134207|ENST00000610222|SYT6 ENSG00000134207|ENST00000610222|SYT6 MSMS UPN46_class_I_Rep_3 1 563.7824096679688 2 563.782459 1125.55036 NaN NaN NaN NaN NaN NaN NaN 105.33 1 105.33 104.83 105.83 0 0 0 0 0.40738 1 25698 25698 0.79363 0 1 21921 2837 13647 13656 26165 26165 -0.0073885957031052385 LFWKNRIH 8 Unmodified _LFWKNRIH_ 0 0 0 MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense;MER75_dup478|chr22:49876637-49877144:+|1.1686019011251478|0.0759267674095626|3.94|151.0|19|1|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.319580078125 2 557.319443 1112.62433 NaN NaN NaN NaN NaN NaN NaN 102.16 1 102.16 101.66 102.66 0 0 0 0 0.40746 1 24929 24929 0.69038 0 1 21922 16209 13648 13657 26166 26166 0.07252567907880803 LFWKNRIH 8 Unmodified _LFWKNRIH_ 0 0 0 MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense;MER75_dup478|chr22:49876637-49877144:+|1.1686019011251478|0.0759267674095626|3.94|151.0|19|1|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MSMS UPN47_class_I_Rep_1 2 557.320068359375 2 557.319443 1112.62433 NaN NaN NaN NaN NaN NaN NaN 99.247 1 103.04 102.54 103.54 3.7926 0 0 0 0.40746 1 24550 24550 0.69038 0 1 21923 16209 13648 13657 26167 26167 0.07252567907880803 LFWKNRIH 8 Unmodified _LFWKNRIH_ 0 0 0 MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense;MER75_dup478|chr22:49876637-49877144:+|1.1686019011251478|0.0759267674095626|3.94|151.0|19|1|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 557.3201293945312 2 557.319443 1112.62433 NaN NaN NaN NaN NaN NaN NaN 98.725 1 102.16 101.66 102.66 3.4328 0 0 0 0.40746 1 24442 24442 0.69038 0 1 21924 16209 13648 13657 26168 26168 0.07252567907880803 LFWKNRIH 8 Unmodified _LFWKNRIH_ 0 0 0 MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense;MER75_dup478|chr22:49876637-49877144:+|1.1686019011251478|0.0759267674095626|3.94|151.0|19|1|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|29|2|anti-sense MSMS UPN48_class_I_Rep_3 7 557.3200073242188 2 557.319443 1112.62433 NaN NaN NaN NaN NaN NaN NaN 98.82 1 102.7 102.2 103.2 3.8839 0 0 0 0.40746 1 23413 23413 0.69038 0 1 21925 16209 13648 13657 26169 26169 0.07252567907880803 LFWMVIEI 8 Unmodified _LFWMVIEI_ 0 0 0 REV__L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|151|1|anti-sense REV__L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|151|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.7899780273438 2 525.788264 1049.56198 NaN NaN NaN NaN NaN NaN NaN 79.335 1 82.629 82.129 83.129 3.295 0 0 0 0.38547 1 19823 19823 13.508 3.434 1 + 21926 29266 13649 13658 26170 26170 0.03917660724664529 LFWRHKER 8 Unmodified _LFWRHKER_ 0 0 0 REV__HAL1_dup19541|chr16:12732530-12733274:+|1.0649767060654798|0.0075920234483687|7.13|151.0|23|3|sense REV__HAL1_dup19541|chr16:12732530-12733274:+|1.0649767060654798|0.0075920234483687|7.13|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 586.3278198242188 2 586.327799 1170.64105 NaN NaN NaN NaN NaN NaN NaN 35.61 1 38.865 38.365 39.365 3.2547 0 0 0 0.40738 1 6616 6616 0.79363 0 1 + 21927 23389 13650 13659 26171 26171 0.06255068793825558 LFWVLMFK 8 Unmodified _LFWVLMFK_ 0 0 0 L1MEg_dup6486|chr7:50608984-50609475:+|1.0591437802244883|0.2104425892639194|2.33|150.0|35|3|anti-sense L1MEg_dup6486|chr7:50608984-50609475:+|1.0591437802244883|0.2104425892639194|2.33|150.0|35|3|anti-sense L1MEg_dup6486|chr7:50608984-50609475:+|1.0591437802244883|0.2104425892639194|2.33|150.0|35|3|anti-sense MSMS UPN47_class_I_Rep_1 2 542.306640625 2 542.306624 1082.59869 NaN NaN NaN NaN NaN NaN NaN 73.979 1 77.365 76.865 77.865 3.3861 0 0 0 0.40738 1 18188 18188 0.79363 0 1 21928 13419 13651 13660 26172 26172 0.06069957341242116 LFWVLRFL 8 Unmodified _LFWVLRFL_ 0 0 0 L1M2_dup4582|chr8:89746065-89748267:+|1.131320366539487|0.0834881039340287|3.76|151.0|117|2|anti-sense L1M2_dup4582|chr8:89746065-89748267:+|1.131320366539487|0.0834881039340287|3.76|151.0|117|2|anti-sense L1M2_dup4582|chr8:89746065-89748267:+|1.131320366539487|0.0834881039340287|3.76|151.0|117|2|anti-sense MSMS UPN47_class_I_Rep_3 4 547.3327026367188 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 69.93 1 73.134 72.634 73.634 3.2044 0 0 0 0.40581 1 17079 17079 2.8892 0 1 21929 8690 13652 13661 26173 26173 0.10580408341570546 LFWVTQSVI 9 Unmodified _LFWVTQSVI_ 0 0 0 L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|141|2|anti-sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|141|2|anti-sense L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|141|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.8079833984375 2 546.808042 1091.60153 0.50305 0.00027507 -0.60385 -0.00033019 -0.1008 -5.5118E-05 546.8076166355843 67.014 0.43937 70.51 70.389 70.829 3.4964 32 26 2 0 0 0 0.43982 1 15405 15405 5.7319 2.1354 1 108810 21930 13634 13653 13662 26174 26174 0.0593950399975256 LFYDDYYED 9 Unmodified _LFYDDYYED_ 0 0 0 ENST00000593036.4_1_19:541247-541549:+|nuORF;ENSG00000099804|ENST00000215574|CDC34 ENST00000593036.4_1_19:541247-541549:+|nuORF ENST00000593036.4_1_19:541247-541549:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 621.7457275390625 2 621.745502 1241.47645 0.54353 0.00033794 -0.09826 -6.1093E-05 0.44527 0.00027685 621.7455031024854 58.147 0.49701 61.634 61.347 61.844 3.487 47 27 2 0 0 0 0.48846 2 12662 12662;12714 1.8442 0 1 173930 21931 1448 13654 13663 26175;26176 26175 -0.1346287771796142 LFYDGHFFY 9 Unmodified _LFYDGHFFY_ 0 0 0 L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|275|2|anti-sense L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|275|2|anti-sense L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|275|2|anti-sense MSMS UPN48_class_I_Rep_2 6 604.787109375 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 20.875 1 24.523 24.023 25.023 3.648 0 0 0 0.39428 1 1873 1873 2.0598 0 1 21932 13915 13655 13664 26177 26177 -0.061619459310350067 LFYFFKMH 8 Unmodified _LFYFFKMH_ 0 0 0 L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|110|1|anti-sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|110|1|anti-sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|110|1|anti-sense MSMS UPN46_class_I_Rep_3 1 566.7841186523438 2 566.786056 1131.55756 NaN NaN NaN NaN NaN NaN NaN 17.105 1 17.105 16.605 17.605 0 0 0 0 0.40738 1 1294 1294 0.79363 0 1 21933 8555 13656 13665 26178 26178 -0.0029580369821360364 LFYFHFFP 8 Unmodified _LFYFHFFP_ 0 0 0 L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|75|3|anti-sense L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|75|3|anti-sense L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|75|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 559.7791137695312 2 559.278921 1116.54329 -0.11511 -6.4381E-05 -1.6016 -0.00089575 -1.7167 -0.00096013 559.7791718446132 13.01 0.19499 16.467 16.358 16.553 3.457 18 15 2 0 0 0 0.72333 1 225 225 0.79363 0 1 20674 21934 11519 13657 13666 26179 26179 -0.010321328548570818 LFYFPIKIH 9 Unmodified _LFYFPIKIH_ 0 0 0 REV__L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|80|3|anti-sense REV__L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_3 4 589.3433227539062 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 88.101 1 91.488 90.988 91.988 3.3873 0 0 0 0.40038 1 22092 22092 0.6015 0 1 + 21935 28771 13658 13667 26180 26180 0.08828373650408139 LFYGFIHF 8 Unmodified _LFYGFIHF_ 0 0 0 L1MC2_dup3028|chr8:106730074-106730781:-|1.218346850411684|0.0690116140032165|4.14|151.0|52|3|anti-sense L1MC2_dup3028|chr8:106730074-106730781:-|1.218346850411684|0.0690116140032165|4.14|151.0|52|3|anti-sense L1MC2_dup3028|chr8:106730074-106730781:-|1.218346850411684|0.0690116140032165|4.14|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_1 2 522.2547607421875 2 522.271096 1042.52764 NaN NaN NaN NaN NaN NaN NaN 73.648 1 77.034 76.534 77.534 3.3861 0 0 0 0.39167 1 18091 18091 11.114 0 1 21936 11247 13659 13668 26181 26181 0.008075806280885445 LFYGKKQP 8 Unmodified _LFYGKKQP_ 0 0 0 nc|ENSG00000163156|Q9BWG6-2|SCNM1;ENSG00000163156|ENST00000368905|SCNM1;ENST00000497147.1_1_1:151139275-151141558:+|nuORF;nc|ENSG00000163156|Q9BWG6-3|SCNM1;ENST00000461862.5_1_1:151138565-151139978:+|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF nc|ENSG00000163156|Q9BWG6-2|SCNM1;nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MSMS UPN46_class_I_Rep_3 1 490.7824401855469 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 67.517 1 67.517 67.017 68.017 0 0 0 0 0.40738 1 15373 15373 0.79363 0 1 21937 16841;3986 13660 13669 26182 26182 0.05850965656804874 LFYHLLAAI 9 Unmodified _LFYHLLAAI_ 0 0 0 REV__ENSG00000144820|ENST00000273352|ADGRG7 REV__ENSG00000144820|ENST00000273352|ADGRG7 MSMS UPN47_class_I_Rep_1 2 530.8114624023438 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 63.724 1 67.079 66.579 67.579 3.3557 0 0 0 0.381 1 15095 15095 5.2307 0.47466 1 + 21938 19495 13661 13670 26183 26183 0.0842811172499296 LFYILFRS 8 Unmodified _LFYILFRS_ 0 0 0 REV__L1MEi_dup180|chr1:150759171-150759640:-|1.00816676553668|0.023548228730267|5.42|151.0|32|3|anti-sense REV__L1MEi_dup180|chr1:150759171-150759640:-|1.00816676553668|0.023548228730267|5.42|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_3 4 529.8077392578125 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 58.672 1 61.838 61.338 62.338 3.1658 0 0 0 0.4032 1 13651 13651 6.3541 0 1 + 21939 28803 13662 13671 26184 26184 0.06955825207955968 LFYKTYEFY 9 Unmodified _LFYKTYEFY_ 0 0 0 L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|251|2|anti-sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|251|2|anti-sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|251|2|anti-sense MSMS UPN46_class_I_Rep_3 1 637.309814453125 2 637.310615 1272.60668 NaN NaN NaN NaN NaN NaN NaN 83.859 1 83.859 83.359 84.359 0 0 0 0 0.4007 1 19934 19934 0.52476 0 1 21940 8741 13663 13672 26185 26185 -0.0187223692828411 LFYLCIMHQ 9 Unmodified _LFYLCIMHQ_ 0 0 0 REV__Tigger7_dup229|chr1:244406409-244407141:+|1.2223331368691783|0.03024787313789|5.34|150.0|23|1|anti-sense REV__Tigger7_dup229|chr1:244406409-244407141:+|1.2223331368691783|0.03024787313789|5.34|150.0|23|1|anti-sense MSMS UPN47_class_I_Rep_2 3 584.2877197265625 2 584.288105 1166.56166 NaN NaN NaN NaN NaN NaN NaN 59.011 1 62.292 61.792 62.792 3.2818 0 0 0 0.39518 1 13704 13704 1.8442 0 1 + 21941 32809 13664 13673 26186 26186 -0.014960822668399487 LFYLFYQLLPF 11 Unmodified _LFYLFYQLLPF_ 0 0 0 L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|71|2|anti-sense L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|71|2|anti-sense L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|71|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.60357666015625 3 488.603963 1462.79006 NaN NaN NaN NaN NaN NaN NaN 110.52 1 110.52 110.02 111.02 0 0 0 0 0.38417 1 27220 27220 0.50596 0 1 21942 10514 13665 13674 26187 26187 0.07717736853373935 LFYLKANL 8 Unmodified _LFYLKANL_ 0 0 0 MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|75|1|anti-sense MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|75|1|anti-sense MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|75|1|anti-sense MSMS UPN47_class_I_Rep_3 4 491.2912902832031 2 491.292028 980.569503 NaN NaN NaN NaN NaN NaN NaN 58.38 1 61.546 61.046 62.046 3.1658 0 0 0 0.40404 1 13561 13561 5.2307 0 1 21943 16076 13666 13675 26188 26188 0.07844136316600725 LFYMMIWH 8 Unmodified _LFYMMIWH_ 0 0 0 REV__L1M5_dup16480|chr5:43048490-43048811:-|1.3698488603960326|0.2673578305883696|2.36|151.0|20|1|anti-sense REV__L1M5_dup16480|chr5:43048490-43048811:-|1.3698488603960326|0.2673578305883696|2.36|151.0|20|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.7312622070312 2 570.772091 1139.52963 0.33227 0.00018965 -0.54164 -0.00030915 -0.20937 -0.0001195 570.771629373457 66.059 0.27892 69.417 69.295 69.574 3.3576 25 17 2 0 0 0 0.72333 1 15819 15819 11.114 0 1 62577 + 21944 24621 13667 13676 26189 26189 -0.034554499499790836 LFYSNDLL 8 Unmodified _LFYSNDLL_ 0 0 0 L1M5_dup23674|chr7:74383102-74383510:-|1.3974247339941972|0.0254560609266088|5.78|151.0|32|3|anti-sense L1M5_dup23674|chr7:74383102-74383510:-|1.3974247339941972|0.0254560609266088|5.78|151.0|32|3|anti-sense L1M5_dup23674|chr7:74383102-74383510:-|1.3974247339941972|0.0254560609266088|5.78|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_1 2 492.7567138671875 2 492.755475 983.496398 NaN NaN NaN NaN NaN NaN NaN 37.562 1 41.227 40.727 41.727 3.6652 0 0 0 0.39624 1 7142 7142 9.3474 0 1 21945 9114 13668 13677 26190 26190 0.003989628033423287 LFYTKRQM 8 Unmodified _LFYTKRQM_ 0 0 0 REV__L1MEb_dup83|chr1:155391983-155392480:-|1.862596816323852|0.0167243774731682|6.8|151.0|17|2|sense REV__L1MEb_dup83|chr1:155391983-155392480:-|1.862596816323852|0.0167243774731682|6.8|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 543.7925415039062 2 543.791869 1085.56919 NaN NaN NaN NaN NaN NaN NaN 70.874 1 70.874 70.374 71.374 0 0 0 0 0.40604 1 16307 16307 2.5775 0 1 + 21946 28341 13669 13678 26191 26191 0.029823933251009294 LFYYAFLL 8 Unmodified _LFYYAFLL_ 0 0 0 Tigger1_dup6231|chr8:47445106-47446582:+|3.4008794908906856|0.1296518130974469|4.71|151.0|1|1|sense Tigger1_dup6231|chr8:47445106-47446582:+|3.4008794908906856|0.1296518130974469|4.71|151.0|1|1|sense Tigger1_dup6231|chr8:47445106-47446582:+|3.4008794908906856|0.1296518130974469|4.71|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 525.304931640625 2 525.288954 1048.56336 NaN NaN NaN NaN NaN NaN NaN 64.609 1 67.783 67.283 68.283 3.1741 0 0 0 0.4032 1 15463 15463 6.3541 0 1 21947 33152 13670 13679 26192 26192 0.04101618085087466 LFYYVFFV 8 Unmodified _LFYYVFFV_ 0 0 0 AluJo_dup25973|chr6:136789016-136789338:+|1.118611270700825|0.0519479121754025|4.43|151.0|24|3|anti-sense AluJo_dup25973|chr6:136789016-136789338:+|1.118611270700825|0.0519479121754025|4.43|151.0|24|3|anti-sense AluJo_dup25973|chr6:136789016-136789338:+|1.118611270700825|0.0519479121754025|4.43|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_1 5 549.2933349609375 2 549.288954 1096.56336 NaN NaN NaN NaN NaN NaN NaN 48.38 1 51.904 51.404 52.404 3.5239 0 0 0 0.40581 1 9664 9664 2.8892 0 1 21948 98 13671 13680 26193 26193 0.018936180850914752 LFYYVGFWF 9 Unmodified _LFYYVGFWF_ 0 0 0 REV__L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|33|1|anti-sense REV__L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 621.3077392578125 2 621.305136 1240.59572 NaN NaN NaN NaN NaN NaN NaN 28.653 1 32.284 31.784 32.784 3.6311 0 0 0 0.40038 1 3967 3967 0.6015 0.076735 1 + 21949 26447 13672 13681 26194 26194 -0.014955945119027092 LFYYYTFR 8 Unmodified _LFYYYTFR_ 0 0 0 L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|178|1|anti-sense L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|178|1|anti-sense L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|178|1|anti-sense MSMS UPN48_class_I_Rep_1 5 587.2639770507812 2 586.792392 1171.57023 NaN NaN NaN NaN NaN NaN NaN 68.691 1 72.144 71.644 72.644 3.4529 0 0 0 0.40738 1 15879 15879 0.79363 0.10326 1 21950 14342 13673 13682 26195 26195 -0.008690690343428287 LFYYYYYY 8 Unmodified _LFYYYYYY_ 0 0 0 MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|105|3|sense REV__L1M8_dup1193|chr11:43454871-43456179:+|6.53284871057039|0.1053526326864316|5.95|151.0|97|3|anti-sense REV__L1M8_dup1193|chr11:43454871-43456179:+|6.53284871057039|0.1053526326864316|5.95|151.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 629.2781372070312 2 629.278783 1256.54301 0.4429 0.00027871 -1.193 -0.00075073 -0.75011 -0.00047203 629.2780703327537 65.684 0.47571 68.864 68.591 69.067 3.1795 41 30 2 0 0 0 0.82752 1 15818 15818 6.3541 0 1 68960 21951 15969 13674 13683 26196 26196 -0.07499597365381305 LGAGRPFR 8 Unmodified _LGAGRPFR_ 0 0 0 REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.2581787109375 2 437.256311 872.49807 NaN NaN NaN NaN NaN NaN NaN 90.576 1 94.202 93.702 94.702 3.626 0 0 0 0.40604 1 21767 21767 2.5775 0 1 + 21952 22308 13675 13684 26197 26197 0.05672061402606232 LGARLGRRRR 10 Unmodified _LGARLGRRRR_ 0 0 0 REV__ENST00000399199.7_1_6:30652624-30652663:-|nuORF REV__ENST00000399199.7_1_6:30652624-30652663:-|nuORF MSMS UPN46_class_I_Rep_3 1 404.5246276855469 3 404.262039 1209.76429 NaN NaN NaN NaN NaN NaN NaN 69.916 1 69.916 69.416 70.416 0 0 0 0 0.53105 1 16043 16043 0.15932 0 1 + 21953 22148 13676 13685 26198 26198 0.16779744964969723 LGASLLVQL 9 Unmodified _LGASLLVQL_ 0 0 0 REV__ENST00000395042.1_1_20:62704915-62705161:-|nuORF REV__ENST00000395042.1_1_20:62704915-62705161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 457.2901611328125 2 457.289485 912.564418 -0.026938 -1.2318E-05 0.96612 0.0004418 0.93919 0.00042948 457.29003656854167 79.518 0.40752 82.874 82.779 83.187 3.3554 81 45 2 0 0 0 0.21527 1 19822 19822 19.257 0 1 179410 + 21954 22111 13677 13686 26199 26199 0.10463832454001931 LGASLLVQL 9 Unmodified _LGASLLVQL_ 0 0 0 REV__ENST00000395042.1_1_20:62704915-62705161:-|nuORF REV__ENST00000395042.1_1_20:62704915-62705161:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 457.289485 912.564418 -0.026938 -1.2318E-05 0.96612 0.0004418 0.93919 0.00042948 457.29003656854167 79.518 0.40752 82.874 82.779 83.187 3.3554 -0.086897 0.00030578 NaN 19.257 81 45 2 NaN NaN NaN NaN 0 NaN NaN 0 179410 + 21955 22111 13677 13686 0.10463832454001931 LGASLLVQL 9 Unmodified _LGASLLVQL_ 0 0 0 REV__ENST00000395042.1_1_20:62704915-62705161:-|nuORF REV__ENST00000395042.1_1_20:62704915-62705161:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 457.289485 912.564418 -0.13746 -6.2858E-05 0.59841 0.00027365 0.46095 0.00021079 457.2897516235993 79.753 0.9054 83.047 82.621 83.526 3.295 0.086897 -3.0529E-05 NaN 19.257 179 96 2 NaN NaN NaN NaN 0 NaN NaN 0 259520 + 21956 22111 13677 13686 0.10463832454001931 LGAVAHTY 8 Unmodified _LGAVAHTY_ 0 0 0 AluSz_dup97281|chr20:3878555-3878836:+|1.1390546824687031|0.1220562701758323|3.22|151.0|9|3|sense AluSz_dup97281|chr20:3878555-3878836:+|1.1390546824687031|0.1220562701758323|3.22|151.0|9|3|sense AluSz_dup97281|chr20:3878555-3878836:+|1.1390546824687031|0.1220562701758323|3.22|151.0|9|3|sense MSMS UPN47_class_I_Rep_2 3 416.2281188964844 2 416.221603 830.428653 NaN NaN NaN NaN NaN NaN NaN 24.655 1 28.138 27.638 28.638 3.483 0 0 0 0.40738 1 3303 3303 0.79363 0 1 21957 375 13678 13687 26200 26200 0.006655576631715121 LGAVHLRN 8 Unmodified _LGAVHLRN_ 0 0 0 ENST00000411557.5_1_22:39053019-39053097:+|nuORF ENST00000411557.5_1_22:39053019-39053097:+|nuORF ENST00000411557.5_1_22:39053019-39053097:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 440.79925537109375 2 440.261594 878.508634 0.15681 6.9039E-05 -0.33979 -0.0001496 -0.18298 -8.0559E-05 440.2612552680051 84.599 0.22025 84.599 84.484 84.704 0 28 21 2 0 0 0 0.72333 1 20136 20136 0 0 1 93082 21958 6631 13679 13688 26201 26201 0.06452044057027706 LGAVTLITN 9 Unmodified _LGAVTLITN_ 0 0 0 REV__Kanga1b_dup147|chr7:37170206-37170561:+|1.3817057492708271|0.0130393066417333|6.73|151.0|23|3|anti-sense REV__Kanga1b_dup147|chr7:37170206-37170561:+|1.3817057492708271|0.0130393066417333|6.73|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_2 3 451.2716979980469 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 72.937 1 76.234 75.734 76.734 3.2971 0 0 0 0.37692 1 17905 17905 6.2058 0 1 + 21959 23992 13680 13689 26202 26202 0.0737895555726027 LGCCVFLHVY 10 Unmodified _LGCCVFLHVY_ 0 0 0 REV__L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|107|1|anti-sense REV__L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|107|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 577.280029296875 2 577.28028 1152.54601 0.44246 0.00025542 -0.62858 -0.00036287 -0.18612 -0.00010744 577.2796293811812 73.708 0.78574 77.013 76.709 77.494 3.3048 161 77 3 0 0 0 0.53188 1 18158 18158 7.9102 1.7044 1 391320 + 21960 25448 13681 13690 26203 26203 -0.024163687838836267 LGCGRGWRNN 10 Unmodified _LGCGRGWRNN_ 0 0 0 nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2 nc|ENSG00000183378|Q7RTZ1|OVCH2 nc|ENSG00000183378|Q7RTZ1|OVCH2 MSMS UPN47_class_I_Rep_1 2 566.7986450195312 2 566.775074 1131.53559 NaN NaN NaN NaN NaN NaN NaN 56.484 1 59.941 59.441 60.441 3.4572 0 0 0 0.53105 1 12904 12904 3.2813 0.54611 1 21961 4995 13682 13691 26204 26204 -0.024912153940931603 LGCMDDYT 8 Unmodified _LGCMDDYT_ 0 0 0 nc|ENSG00000141556|Q9BTW9-4|TBCD;ENSG00000141556|ENST00000355528|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF nc|ENSG00000141556|Q9BTW9-4|TBCD nc|ENSG00000141556|Q9BTW9-4|TBCD MSMS UPN48_class_I_Rep_2 6 459.1720886230469 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 47.915 1 51.651 51.151 52.151 3.7361 0 0 0 0.40738 1 9517 9517 0.79363 0 1 21962 3225 13683 13692 26205 26205 -0.1308575503934435 LGCMDDYT 8 Unmodified _LGCMDDYT_ 0 0 0 nc|ENSG00000141556|Q9BTW9-4|TBCD;ENSG00000141556|ENST00000355528|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF nc|ENSG00000141556|Q9BTW9-4|TBCD nc|ENSG00000141556|Q9BTW9-4|TBCD MSMS UPN48_class_I_Rep_3 7 459.1721496582031 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 48.071 1 51.705 51.205 52.205 3.6339 0 0 0 0.40738 1 9503 9503 0.79363 0 1 21963 3225 13683 13692 26206 26206 -0.1308575503934435 LGCTVKSET 9 Unmodified _LGCTVKSET_ 0 0 0 ENSG00000213512|ENST00000294671|GBP7 ENSG00000213512|ENST00000294671|GBP7 ENSG00000213512|ENST00000294671|GBP7 MSMS UPN47_class_I_Rep_3 4 469.2441711425781 2 469.236593 936.458632 NaN NaN NaN NaN NaN NaN NaN 29.274 1 32.597 32.097 33.097 3.3235 0 0 0 0.38639 1 4709 4709 3.9444 1.0552 1 21964 5593 13684 13693 26207 26207 -0.012138714537854867 LGCVPVKVK 9 Unmodified _LGCVPVKVK_ 0 0 0 L1ME3C_dup3293|chr20:35808080-35808558:-|1.3510427691994478|0.0180962583751464|6.22|151.0|3|1|sense L1ME3C_dup3293|chr20:35808080-35808558:-|1.3510427691994478|0.0180962583751464|6.22|151.0|3|1|sense L1ME3C_dup3293|chr20:35808080-35808558:-|1.3510427691994478|0.0180962583751464|6.22|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 471.7948303222656 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 17.56 1 20.946 20.446 21.446 3.387 0 0 0 0.40038 1 1335 1335 0.6015 0.6015 1 21965 12754 13685 13694 26208 26208 0.1000848281881872 LGDLAHAYNR 10 Unmodified _LGDLAHAYNR_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 565.2908935546875 2 565.291079 1128.56761 -0.061104 -3.4541E-05 0.14281 8.0732E-05 0.081711 4.619E-05 565.2911855454054 31.778 0.66621 35.507 35.187 35.854 3.7293 110 51 3 0 0 0 0.54466 2 5356 5356;5440 6.2058 1.8765 1 163010 + 21966 20771 13686 13695 26209;26210 26209 0.008464755607064944 LGDLYKREL 9 Unmodified _LGDLYKREL_ 0 0 0 L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|29|3|sense L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|29|3|sense L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.81298828125 2 553.813856 1105.61316 -0.0087071 -4.8221E-06 0.11824 6.5481E-05 0.10953 6.0659E-05 553.8137783107231 40.627 1.3306 43.864 43.37 44.7 3.2372 212 94 3 0 0 0 0.44742 1 8387 8387 5.2969 0 1 545550 21967 12484 13687 13696 26211 26211 0.06457701023077789 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS UPN47_class_I_Rep_1 2 581.329345703125 2 581.329339 1160.64412 0.34418 0.00020008 0.091954 5.3455E-05 0.43613 0.00025354 581.3293101831157 65.771 1.2034 69.129 68.741 69.944 3.3576 168 74 3 0 0 0 0.30462 1 15835 15835 15.248 0.8431 1 951540 + 21968 20457 13688 13697 26212 26212 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_1 2 581.3289184570312 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.327 1 69.685 69.185 70.185 3.3576 0 0 0 0.26612 1 15881 15881 14.405 0 1 + 21969 20457 13688 13697 26213 26213 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_1 2 581.3290405273438 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.492 1 69.849 69.349 70.349 3.3576 0 0 0 0.38417 1 15931 15931 4.897 0 1 + 21970 20457 13688 13697 26214 26214 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_2 3 581.3294067382812 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.558 1 69.817 69.317 70.317 3.2588 0 0 0 0.089299 1 15997 15997 23.79 2.1996 1 + 21971 20457 13688 13697 26215 26215 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_2 3 581.3280029296875 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.757 1 70.016 69.516 70.516 3.2588 0 0 0 0.37149 1 16057 16057 7.609 0.50723 1 + 21972 20457 13688 13697 26216 26216 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_2 3 581.3296508789062 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.838 1 70.102 69.602 70.602 3.2636 0 0 0 0.38417 1 16082 16082 4.897 0.36815 1 + 21973 20457 13688 13697 26217 26217 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS UPN47_class_I_Rep_3 4 581.3302612304688 2 581.329339 1160.64412 0.43817 0.00025472 0.0052639 3.0601E-06 0.44343 0.00025778 581.3292505524337 66.183 1.3706 69.368 68.926 70.296 3.1853 220 98 3 0 0 0 0.37961 2 16118 16118;16205 10.8 0.64894 1 770560 + 21974 20457 13688 13697 26218;26219 26218 0.07022854337333229 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_3 4 581.3301391601562 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 67.381 1 70.572 70.072 71.072 3.1914 0 0 0 0.38417 1 16311 16311 4.897 0.36815 1 + 21975 20457 13688 13697 26220 26220 0.07022854337333229 LGDVWAHL 8 Unmodified _LGDVWAHL_ 0 0 0 MER20_dup14818|chr19:2082238-2082439:-|1.048068550495648|0.1479289680491144|2.82|151.0|4|3|sense MER20_dup14818|chr19:2082238-2082439:-|1.048068550495648|0.1479289680491144|2.82|151.0|4|3|sense MER20_dup14818|chr19:2082238-2082439:-|1.048068550495648|0.1479289680491144|2.82|151.0|4|3|sense MSMS UPN47_class_I_Rep_3 4 455.7405090332031 2 455.742702 909.470852 NaN NaN NaN NaN NaN NaN NaN 20.667 1 24.017 23.517 24.517 3.3496 0 0 0 0.40738 1 2174 2174 0.79363 0 1 21976 15834 13689 13698 26221 26221 0.012495330715523778 LGEELISLL 9 Unmodified _LGEELISLL_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|258|2|anti-sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|258|2|anti-sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|258|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.79180908203125 2 493.792058 985.569563 0.27566 0.00013612 -0.11892 -5.8723E-05 0.15674 7.7397E-05 493.79190505588906 83.457 0.44031 87.185 86.823 87.263 3.7281 100 57 2 0 0 0 0.16559 1 19796 19796 24.021 0 1 280800 21977 11902 13690 13699 26222 26222 0.07620091525961925 LGESSFSYTF 10 Unmodified _LGESSFSYTF_ 0 0 0 REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 569.2587890625 2 569.258579 1136.50261 0.45184 0.00025722 -0.083849 -4.7732E-05 0.368 0.00020948 569.2584503675963 68.661 0.6306 72.113 71.759 72.39 3.4517 81 53 2 0 0 0 0.21664 3 15831 15790;15831;15869 41.84 17.819 1 231300 + 21978 24728 13691 13700 26223;26224;26225 26224 -0.060185637558106464 LGESSFSYTF 10 Unmodified _LGESSFSYTF_ 0 0 0 REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 569.2593383789062 2 569.258579 1136.50261 0.49258 0.00028041 -0.034376 -1.9569E-05 0.45821 0.00026084 569.2584329775812 68.493 0.55829 72.001 71.68 72.239 3.5083 101 52 3 0 0 0 0.21236 4 15792 15734;15759;15792;15821 49.933 19.296 1 245630 + 21979 24728 13691 13700 26226;26227;26228;26229 26228 -0.060185637558106464 LGESSFSYTF 10 Unmodified _LGESSFSYTF_ 0 0 0 REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 569.2588500976562 2 569.258579 1136.50261 0.51981 0.0002959 -0.12742 -7.2535E-05 0.39239 0.00022337 569.2583792264448 68.622 1.0552 72.132 71.604 72.66 3.5094 185 84 3 0 0 0 0.21236 3 15701 15631;15667;15701 49.933 19.296 1 225710 + 21980 24728 13691 13700 26230;26231;26232 26232 -0.060185637558106464 LGESSFSYTF 10 Unmodified _LGESSFSYTF_ 0 0 0 REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 569.7610473632812 2 569.258579 1136.50261 0.51981 0.0002959 -0.12742 -7.2535E-05 0.39239 0.00022337 569.2583792264448 68.622 1.0552 72.132 71.604 72.66 3.5094 185 84 3 0 0 0 0.84575 1 15631 15631 41.84 11.203 1 225710 + 21981 24728 13691 13700 26233 26233 -0.060185637558106464 LGESSFSYTF 10 Unmodified _LGESSFSYTF_ 0 0 0 REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 569.258579 1136.50261 0.45184 0.00025722 -0.083849 -4.7732E-05 0.368 0.00020948 569.2584503675963 68.661 0.6306 72.113 71.759 72.39 3.4517 0.030953 5.1602E-06 NaN 49.933 81 53 2 NaN NaN NaN NaN 0 NaN NaN 0 231300 + 21982 24728 13691 13700 -0.060185637558106464 LGESSFSYTF 10 Unmodified _LGESSFSYTF_ 0 0 0 REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense REV__L1M6_dup968|chr3:18211561-18212770:+|4.180826988977913|0.0031365934619663|10.38|150.0|70|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 569.258579 1136.50261 0.49258 0.00028041 -0.034376 -1.9569E-05 0.45821 0.00026084 569.2584329775812 68.493 0.55829 72.001 71.68 72.239 3.5083 -0.080775 6.1485E-05 NaN 49.933 101 52 3 NaN NaN NaN NaN 0 NaN NaN 0 245630 + 21983 24728 13691 13700 -0.060185637558106464 LGFKPRDL 8 Unmodified _LGFKPRDL_ 0 0 0 REV__ENSG00000254585|ENST00000650528|MAGEL2 REV__ENSG00000254585|ENST00000650528|MAGEL2 MULTI-MSMS UPN47_class_I_Rep_2 3 473.27911376953125 2 473.279452 944.544351 0.16995 8.0434E-05 0.81559 0.000386 0.98554 0.00046644 473.2796541687933 52.685 0.58634 56.019 55.837 56.424 3.3332 70 44 2 0 0 0 0.82752 1 11837 11837 10.824 0.75 1 261880 + 21984 21374 13692 13701 26234 26234 0.06986081514037323 LGFLYLRE 8 Unmodified _LGFLYLRE_ 0 0 0 REV__nc|ENSG00000186635|Q96P48-5|ARAP1 REV__nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 506.2886657714844 2 505.78711 1009.55967 0.16936 8.5659E-05 -0.14098 -7.1307E-05 0.028375 1.4352E-05 505.78700220863345 57.476 0.53692 60.644 60.455 60.992 3.1681 86 45 2 0 0 0 0.82752 1 13278 13278 9.3474 0 1 129490 + 21985 20896 13693 13702 26235 26235 0.055269483112283524 LGFNESSR 8 Unmodified _LGFNESSR_ 0 0 0 REV__ENSG00000158161.16,EYA3,chr1,-,I9.1,28011087,28013110|48|5.12|6|intron REV__ENSG00000158161.16,EYA3,chr1,-,I9.1,28011087,28013110|48|5.12|6|intron MSMS UPN48_class_I_Rep_1 5 455.225341796875 2 455.224874 908.435195 NaN NaN NaN NaN NaN NaN NaN 98.919 1 102.53 102.03 103.03 3.6065 0 0 0 0.40404 1 23876 23876 5.2307 0 1 + 21986 19837 13694 13703 26236 26236 -0.022685491760853438 LGFPWAHA 8 Unmodified _LGFPWAHA_ 0 0 0 MLT1G1_dup2016|chr9:90880646-90881151:-|2.82216116879216|0.0585841746581377|5.59|151.0|21|2|anti-sense MLT1G1_dup2016|chr9:90880646-90881151:-|2.82216116879216|0.0585841746581377|5.59|151.0|21|2|anti-sense MLT1G1_dup2016|chr9:90880646-90881151:-|2.82216116879216|0.0585841746581377|5.59|151.0|21|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 449.7605895996094 2 449.732138 897.449723 0.18382 8.2669E-05 -1.5323 -0.0006891 -1.3484 -0.00060643 449.731392601873 109.08 0.14044 109.08 108.96 109.1 0 7 5 2 0 0 0 0.72333 1 26704 26704 2.8892 0.58649 1 1054100 21987 16409 13695 13704 26237 26237 -0.003104322373019386 LGFRRFGF 8 Unmodified _LGFRRFGF_ 0 0 0 REV__MER51-int_dup224|chrX:131727168-131728062:+|1.1755946003067026|0.0050674437274567|7.86|149.0|12|2|sense REV__MER51-int_dup224|chrX:131727168-131728062:+|1.1755946003067026|0.0050674437274567|7.86|149.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 500.2803649902344 2 500.279786 998.54502 NaN NaN NaN NaN NaN NaN NaN 57.382 1 60.914 60.414 61.414 3.5317 0 0 0 0.40581 1 12339 12339 2.8892 0 1 + 21988 31385 13696 13705 26238 26238 0.04568920953761335 LGFTSLHVF 9 Unmodified _LGFTSLHVF_ 0 0 0 REV__L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|319|2|anti-sense REV__L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|319|2|anti-sense MSMS UPN47_class_I_Rep_2 3 510.780517578125 2 510.779285 1019.54402 NaN NaN NaN NaN NaN NaN NaN 53.721 1 57.048 56.548 57.548 3.3266 0 0 0 0.38478 1 12087 12087 4.3292 0 1 + 21989 30126 13697 13706 26239 26239 0.03502661794186679 LGFVACFGEKK 11 Unmodified _LGFVACFGEKK_ 0 0 0 MER39_dup2211|chr10:26524003-26524231:+|1.3916937344374856|0.0094234202038501|7.21|151.0|11|2|anti-sense MER39_dup2211|chr10:26524003-26524231:+|1.3916937344374856|0.0094234202038501|7.21|151.0|11|2|anti-sense MER39_dup2211|chr10:26524003-26524231:+|1.3916937344374856|0.0094234202038501|7.21|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_1 2 599.8185424804688 2 599.818084 1197.62162 NaN NaN NaN NaN NaN NaN NaN 44.693 1 48.393 47.893 48.893 3.6999 0 0 0 0.38417 1 9316 9316 1.4819 0.15237 1 21990 15929 13698 13707 26240 26240 0.030709316680486154 LGFVIIYEA 9 Unmodified _LGFVIIYEA_ 0 0 0 REV__ENSG00000138002|ENST00000260570|IFT172 REV__ENSG00000138002|ENST00000260570|IFT172 MULTI-MSMS UPN48_class_I_Rep_1 5 512.7894897460938 2 512.789318 1023.56408 0.23615 0.00012109 -0.020298 -1.0409E-05 0.21585 0.00011068 512.789209038405 92.953 0.23218 96.577 96.435 96.668 3.624 64 29 3 0 0 0 0.17468 1 22354 22354 23.148 0 1 225670 + 21991 19257 13699 13708 26241 26241 0.053244127341372405 LGFVIIYEA 9 Unmodified _LGFVIIYEA_ 0 0 0 REV__ENSG00000138002|ENST00000260570|IFT172 REV__ENSG00000138002|ENST00000260570|IFT172 MSMS UPN48_class_I_Rep_2 6 512.7886962890625 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 92.828 1 96.598 96.098 97.098 3.77 0 0 0 0.28335 1 22084 22084 11.64 0 1 + 21992 19257 13699 13708 26242 26242 0.053244127341372405 LGFVIIYEA 9 Unmodified _LGFVIIYEA_ 0 0 0 REV__ENSG00000138002|ENST00000260570|IFT172 REV__ENSG00000138002|ENST00000260570|IFT172 MSMS UPN48_class_I_Rep_3 7 512.7892456054688 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 92.658 1 96.536 96.036 97.036 3.8782 0 0 0 0.074 1 21965 21965 30.225 0 1 + 21993 19257 13699 13708 26243 26243 0.053244127341372405 LGFWGFRS 8 Unmodified _LGFWGFRS_ 0 0 0 REV__nc|ENSG00000164124|Q7Z5S9-2|TMEM144 REV__nc|ENSG00000164124|Q7Z5S9-2|TMEM144 MSMS UPN47_class_I_Rep_1 2 485.2512512207031 2 485.250695 968.486836 NaN NaN NaN NaN NaN NaN NaN 23.667 1 27.396 26.896 27.896 3.7298 0 0 0 0.40738 1 2965 2965 0.79363 0 1 + 21994 20036 13700 13709 26244 26244 0.001332393084794603 LGGGKTPPGR 10 Unmodified _LGGGKTPPGR_ 0 0 0 nc|ENSG00000204655|Q16653-13|MOG nc|ENSG00000204655|Q16653-13|MOG nc|ENSG00000204655|Q16653-13|MOG MULTI-MSMS UPN47_class_I_Rep_1 2 470.2720642089844 2 470.272158 938.529764 0.15831 7.4449E-05 -0.29163 -0.00013715 -0.13332 -6.2697E-05 470.2719540969789 83.281 0.68835 86.819 86.45 87.138 3.5386 125 72 2 0 0 0 0.56033 2 20783 20783;20818 3.5965 1.2938 1 257280 21995 16807 13701 13710 26245;26246 26245 0.05804009365908769 LGGGKTPPGR 10 Unmodified _LGGGKTPPGR_ 0 0 0 nc|ENSG00000204655|Q16653-13|MOG nc|ENSG00000204655|Q16653-13|MOG nc|ENSG00000204655|Q16653-13|MOG MULTI-MSMS UPN48_class_I_Rep_3 7 470.2720642089844 2 470.272158 938.529764 0.23272 0.00010944 -0.29232 -0.00013747 -0.059597 -2.8027E-05 470.2719431981355 82.941 0.68389 86.647 86.372 87.056 3.7066 196 91 3 0 0 0 0.56033 1 19714 19714 3.5965 1.2938 1 367930 21996 16807 13701 13710 26247 26247 0.05804009365908769 LGGLGGSVLAL 11 Unmodified _LGGLGGSVLAL_ 0 0 0 REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 478.792236328125 2 478.792392 955.570232 0.23464 0.00011234 -0.35072 -0.00016792 -0.11608 -5.5577E-05 478.792161509208 58.927 0.56161 62.209 61.815 62.377 3.2818 58 33 2 0 0 0 0.28469 1 13709 13709 17.113 1.8644 1 119630 + 21997 18237 13702 13711 26248 26248 0.0906693096563913 LGGLGGSVLAL 11 Unmodified _LGGLGGSVLAL_ 0 0 0 REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 478.79229736328125 2 478.792392 955.570232 0.22774 0.00010904 -0.53248 -0.00025495 -0.30475 -0.00014591 478.79203056992793 59.172 0.37707 62.454 62.377 62.754 3.2818 38 26 2 0 0 0 0.28469 1 13751 13751 17.113 1.8644 1 97994 + 21998 18237 13702 13711 26249 26249 0.0906693096563913 LGGLGGSVLAL 11 Unmodified _LGGLGGSVLAL_ 0 0 0 REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MSMS UPN47_class_I_Rep_3 4 478.7919921875 2 478.792392 955.570232 NaN NaN NaN NaN NaN NaN NaN 59.335 1 62.5 62 63 3.1651 0 0 0 0.30011 1 13855 13855 12.241 0.74595 1 + 21999 18237 13702 13711 26250 26250 0.0906693096563913 LGGLKWMP 8 Unmodified _LGGLKWMP_ 0 0 0 ENST00000511497.5_1_4:129391237-129391552:+|nuORF ENST00000511497.5_1_4:129391237-129391552:+|nuORF ENST00000511497.5_1_4:129391237-129391552:+|nuORF MSMS UPN48_class_I_Rep_2 6 451.15478515625 2 451.251849 900.489145 NaN NaN NaN NaN NaN NaN NaN 62.61 1 66.084 65.584 66.584 3.4738 0 0 0 0.40738 1 14007 14007 0.79363 0 1 22000 7188 13703 13712 26251 26251 0.03491951721912301 LGGLSEGKKVL 11 Unmodified _LGGLSEGKKVL_ 0 0 0 nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3 nc|ENSG00000180011|Q8N4Q0-2|PTGR3 nc|ENSG00000180011|Q8N4Q0-2|PTGR3 MULTI-MSMS UPN47_class_I_Rep_2 3 550.8382568359375 2 550.837331 1099.66011 0.034762 1.9148E-05 -0.22936 -0.00012634 -0.1946 -0.00010719 550.8371015875401 20.003 0.78798 23.399 23.114 23.902 3.3963 133 81 2 0 0 0 0.61292 1 1986 1986 4.897 0.95262 1 67327 22001 4878 13704 13713 26252 26252 0.11426560574250288 LGGPFVLMFN 10 Unmodified _LGGPFVLMFN_ 0 0 0 L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|195|2|anti-sense L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|195|2|anti-sense L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|195|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 547.2452392578125 2 547.788795 1093.56304 0.47144 0.00025825 0.18233 9.9876E-05 0.65376 0.00035812 547.7887083647448 53.493 0.079613 56.688 56.621 56.701 3.1948 5 3 2 0 0 0 0.84575 1 12057 12057 3.9444 0 1 25754 22002 8782 13705 13714 26253 26253 0.01999875093611081 LGGRHYRY 8 Unmodified _LGGRHYRY_ 0 0 0 REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|332|2|anti-sense REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|332|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.2777709960938 2 511.26995 1020.52535 0.11407 5.8319E-05 2.6167 0.0013379 2.7308 0.0013962 511.26997293965815 50.039 0.6012 53.382 53.041 53.642 3.3431 63 33 3 0 0 0 0.82752 1 10988 10988 5.7604 1.816 1 86649 + 22003 24971 13706 13715 26254 26254 0.015905449429737928 LGGRHYRY 8 Unmodified _LGGRHYRY_ 0 0 0 REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|332|2|anti-sense REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|332|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.2791137695312 2 511.26995 1020.52535 0.31096 0.00015898 2.6093 0.0013341 2.9203 0.0014931 511.2702733615374 50.09 0.69792 53.317 52.916 53.614 3.2262 86 38 3 0 0 0 0.82752 1 11121 11121 2.8892 0 1 72098 + 22004 24971 13706 13715 26255 26255 0.015905449429737928 LGGSKFRAR 9 Unmodified _LGGSKFRAR_ 0 0 0 ENST00000589647.5_2_17:67498778-67513009:+|nuORF ENST00000589647.5_2_17:67498778-67513009:+|nuORF ENST00000589647.5_2_17:67498778-67513009:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955627441406 2 496.293425 990.572297 0.08832 4.3832E-05 4.3099 0.002139 4.3983 0.0021828 496.29553118532846 31.92 0.054913 31.92 31.898 31.953 0 5 3 2 0 0 0 0.45688 1 5400 5400 4.756 1.1595 1 2550100 22005 7602 13707 13716 26256 26256 0.0766340449412155 LGHGHSLE 8 Unmodified _LGHGHSLE_ 0 0 0 MSTC-int_dup111|chr10:30992713-30994266:+|1.250346202415718|0.0561405242032902|4.48|151.0|55|1|anti-sense MSTC-int_dup111|chr10:30992713-30994266:+|1.250346202415718|0.0561405242032902|4.48|151.0|55|1|anti-sense MSTC-int_dup111|chr10:30992713-30994266:+|1.250346202415718|0.0561405242032902|4.48|151.0|55|1|anti-sense MSMS UPN46_class_I_Rep_3 1 425.21502685546875 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 101.02 1 101.02 100.52 101.52 0 0 0 0 0.40738 1 24641 24641 0.79363 0 1 22006 16593 13708 13717 26257 26257 -0.016205144849436692 LGHIHHYDW 9 Unmodified _LGHIHHYDW_ 0 0 0 REV__Tigger3b_dup2789|chr7:17332016-17333222:+|1.0863663725907058|0.1305369811253946|3.06|149.0|102|3|anti-sense REV__Tigger3b_dup2789|chr7:17332016-17333222:+|1.0863663725907058|0.1305369811253946|3.06|149.0|102|3|anti-sense MSMS UPN47_class_I_Rep_3 4 589.2804565429688 2 589.280515 1176.54648 NaN NaN NaN NaN NaN NaN NaN 35.633 1 38.888 38.388 39.388 3.2547 0 0 0 0.40038 1 6623 6623 0.6015 0 1 + 22007 32739 13709 13718 26258 26258 -0.034734897481712323 LGHIRARR 8 Unmodified _LGHIRARR_ 0 0 0 L1M5_dup51114|chr19:35275427-35276058:-|1.1525906254041485|0.3718764448787222|1.63|151.0|21|3|sense L1M5_dup51114|chr19:35275427-35276058:-|1.1525906254041485|0.3718764448787222|1.63|151.0|21|3|sense L1M5_dup51114|chr19:35275427-35276058:-|1.1525906254041485|0.3718764448787222|1.63|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 489.8061218261719 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 31.468 1 31.468 30.968 31.968 0 0 0 0 0.40604 1 5262 5262 2.5775 0 1 22008 9196 13710 13719 26259 26259 0.10981932825166041 LGHKKRGA 8 Unmodified _LGHKKRGA_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 433.7696228027344 2 433.769586 865.524619 -0.19548 -8.4795E-05 0.71853 0.00031168 0.52305 0.00022688 433.7696484934988 107.45 0.097366 110.99 110.92 111.02 3.5345 18 11 2 0 0 0 0.82752 1 25994 25994 5.2307 0 1 3482000 + 22009 21731 13711 13720 26260 26260 0.08647750293937406 LGHKKRGA 8 Unmodified _LGHKKRGA_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 433.76983642578125 2 433.769586 865.524619 0.097787 4.2417E-05 0.14124 6.1265E-05 0.23903 0.00010368 433.76931716271827 107.48 0.13519 111.16 111.06 111.19 3.6783 32 18 2 0 0 0 0.82752 1 25400 25400 5.2307 0 1 2994600 + 22010 21731 13711 13720 26261 26261 0.08647750293937406 LGHKKRGA 8 Unmodified _LGHKKRGA_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 433.76947021484375 2 433.769586 865.524619 0.13474 5.8447E-05 -0.64184 -0.00027841 -0.5071 -0.00021996 433.7692177859058 107.5 0.11159 111.18 111.09 111.2 3.6813 17 11 2 0 0 0 0.82752 1 25348 25348 13.508 0 1 3100000 + 22011 21731 13711 13720 26262 26262 0.08647750293937406 LGHKKRGA 8 Unmodified _LGHKKRGA_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 433.769586 865.524619 0.14201 6.1599E-05 0.1212 5.2572E-05 0.26321 0.00011417 433.76942635556827 107.48 0.051117 111.15 111.12 111.17 3.6724 -0.011269 0.00025949 NaN 5.2307 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1202400 + 22012 21731 13711 13720 0.08647750293937406 LGHKKRGA 8 Unmodified _LGHKKRGA_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 433.769586 865.524619 0.097787 4.2417E-05 0.14124 6.1265E-05 0.23903 0.00010368 433.76931716271827 107.48 0.13519 111.16 111.06 111.19 3.6783 -0.0036664 0.00027688 NaN 5.2307 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2994600 + 22013 21731 13711 13720 0.08647750293937406 LGHKKRGA 8 Unmodified _LGHKKRGA_ 0 0 0 REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF REV__ENST00000319921.4_1_17:78269370-78269457:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 433.769586 865.524619 0.13474 5.8447E-05 -0.64184 -0.00027841 -0.5071 -0.00021996 433.7692177859058 107.5 0.11159 111.18 111.09 111.2 3.6813 0.014935 -0.00040247 NaN 5.2307 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3100000 + 22014 21731 13711 13720 0.08647750293937406 LGHLKKKF 8 Unmodified _LGHLKKKF_ 0 0 0 L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|39|2|anti-sense L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|39|2|anti-sense L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.8117370605469 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 79.005 1 82.642 82.142 83.142 3.6368 0 0 0 0.40746 1 18719 18719 0.69038 0 1 22015 14097 13712 13721 26263 26263 0.12634951164693575 LGHMLLHH 8 Unmodified _LGHMLLHH_ 0 0 0 REV__ENSG00000101544|ENST00000262198|ADNP2 REV__ENSG00000101544|ENST00000262198|ADNP2 MSMS UPN48_class_I_Rep_2 6 479.2590637207031 2 479.257997 956.501441 NaN NaN NaN NaN NaN NaN NaN 32.978 1 36.628 36.128 37.128 3.6497 0 0 0 0.40738 1 5156 5156 0.79363 0 1 + 22016 18166 13713 13722 26264 26264 0.021449881849662233 LGHPPSSPLLK 11 Unmodified _LGHPPSSPLLK_ 0 0 0 nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ nc|ENSG00000011451|O95785-4|WIZ nc|ENSG00000011451|O95785-4|WIZ MULTI-MSMS UPN48_class_I_Rep_2 6 573.337646484375 2 573.337498 1144.66044 0.4258 0.00024413 -0.11766 -6.7457E-05 0.30815 0.00017667 573.3374124539421 40.847 0.58568 44.598 44.332 44.917 3.7508 80 57 3 0 0 0 0.48412 1 7435 7435 8.1555 2.4237 1 163530 22017 776 13714 13723 26265 26265 0.0938998029407685 LGHRRKYY 8 Unmodified _LGHRRKYY_ 0 0 0 REV__HAL1ME_dup1155|chr2:171763101-171763463:+|1.8692880679154475|0.048811082862471|5.26|151.0|10|2|sense REV__HAL1ME_dup1155|chr2:171763101-171763463:+|1.8692880679154475|0.048811082862471|5.26|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.8062133789062 2 546.8067 1091.59885 -0.023807 -1.3018E-05 -1.2503 -0.00068367 -1.2741 -0.00069669 546.80589550695 29.413 0.64069 33.171 32.746 33.387 3.7578 68 51 2 0 0 0 0.82752 1 4591 4591 2.5775 0 1 112420 + 22018 23488 13715 13724 26266 26266 0.056710933854674295 LGHRRKYY 8 Unmodified _LGHRRKYY_ 0 0 0 REV__HAL1ME_dup1155|chr2:171763101-171763463:+|1.8692880679154475|0.048811082862471|5.26|151.0|10|2|sense REV__HAL1ME_dup1155|chr2:171763101-171763463:+|1.8692880679154475|0.048811082862471|5.26|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.805908203125 2 546.8067 1091.59885 0.02121 1.1598E-05 -1.0203 -0.00055792 -0.99912 -0.00054632 546.8061295967184 29.589 0.72002 33.081 32.756 33.476 3.4923 97 58 2 0 0 0 0.82752 1 4803 4803 2.5775 0 1 87760 + 22019 23488 13715 13724 26267 26267 0.056710933854674295 LGHTKLVET 9 Unmodified _LGHTKLVET_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MSMS UPN47_class_I_Rep_1 2 499.2871398925781 2 499.287474 996.560395 NaN NaN NaN NaN NaN NaN NaN 41.577 1 45.257 44.757 45.757 3.6792 0 0 0 0.39518 1 8364 8364 1.8442 0 1 + 22020 19407 13716 13725 26268 26268 0.061977429602734446 LGHTRKKK 8 Unmodified _LGHTRKKK_ 0 0 0 REV__HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|48|3|sense REV__HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|48|3|sense MSMS UPN47_class_I_Rep_1 2 484.3112487792969 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 111.63 1 115.21 114.71 115.71 3.572 0 0 0 0.40738 1 27545 27545 0.79363 0 1 + 22021 23385 13717 13726 26269 26269 0.12404281390831784 LGHWHSKKK 9 Unmodified _LGHWHSKKK_ 0 0 0 REV__L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|2|1|sense REV__L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 560.823486328125 2 560.82235 1119.63015 NaN NaN NaN NaN NaN NaN NaN 19.893 1 23.244 22.744 23.744 3.3514 0 0 0 0.40038 1 1948 1948 0.6015 0 1 + 22022 28813 13718 13727 26270 26270 0.07511666419554786 LGIAGSFSLA 10 Unmodified _LGIAGSFSLA_ 0 0 0 REV__ENST00000497874.5_1_1:65886353-65893483:+|nuORF REV__ENST00000497874.5_1_1:65886353-65893483:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 468.2637939453125 2 468.263468 934.512382 0.078346 3.6686E-05 -0.26689 -0.00012497 -0.18854 -8.8287E-05 468.2632599619602 34.71 0.65659 34.71 34.443 35.1 0 74 49 2 0 0 0 0.38932 2 6213 6213;6270 20.454 0 1 120770 + 22023 21249 13719 13728 26271;26272 26271 0.042506690402206004 LGIAGSFSLA 10 Unmodified _LGIAGSFSLA_ 0 0 0 REV__ENST00000497874.5_1_1:65886353-65893483:+|nuORF REV__ENST00000497874.5_1_1:65886353-65893483:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 468.263468 934.512382 0.078346 3.6686E-05 -0.26689 -0.00012497 -0.18854 -8.8287E-05 468.2632599619602 34.71 0.65659 34.71 34.443 35.1 0 0 0 NaN 20.454 74 49 2 NaN NaN NaN NaN 0 NaN NaN 0 120770 + 22024 21249 13719 13728 0.042506690402206004 LGIAPGLRW 9 Unmodified _LGIAPGLRW_ 0 0 0 REV__ENSG00000267368|ENST00000340457|UPK3BL1 REV__ENSG00000267368|ENST00000340457|UPK3BL1 MULTI-MSMS UPN47_class_I_Rep_3 4 492.29815673828125 2 491.795269 981.575986 0.050371 2.4772E-05 4.3474 0.002138 4.3978 0.0021628 491.7958211353027 46.138 0.96099 49.382 48.945 49.906 3.2441 77 59 2 0 0 0 0.46434 1 9753 9753 4.3292 1.7518 1 95988 + 22025 21412 13720 13729 26273 26273 0.08446074267988024 LGIAPGLRW 9 Unmodified _LGIAPGLRW_ 0 0 0 REV__ENSG00000267368|ENST00000340457|UPK3BL1 REV__ENSG00000267368|ENST00000340457|UPK3BL1 MSMS UPN47_class_I_Rep_3 4 491.7959899902344 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 56.017 1 59.189 58.689 59.689 3.1721 0 0 0 0.38478 1 12846 12846 4.3292 0 1 + 22026 21412 13720 13729 26274 26274 0.08446074267988024 LGIAPGLRW 9 Unmodified _LGIAPGLRW_ 0 0 0 REV__ENSG00000267368|ENST00000340457|UPK3BL1 REV__ENSG00000267368|ENST00000340457|UPK3BL1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 491.795269 981.575986 0.24893 0.00012242 2.4151 0.0011877 2.664 0.0013101 491.7959137574 49.255 0.2118 49.255 49.157 49.369 0 -0.063548 -0.00069245 NaN 4.3292 30 22 3 NaN NaN NaN NaN 0 NaN NaN 0 216300 + 22027 21412 13720 13729 0.08446074267988024 LGIAYWTS 8 Unmodified _LGIAYWTS_ 0 0 0 REV__ENSG00000101871|ENST00000317552|MID1 REV__ENSG00000101871|ENST00000317552|MID1 MSMS UPN47_class_I_Rep_2 3 455.7378845214844 2 455.737086 909.459619 NaN NaN NaN NaN NaN NaN NaN 118.99 1 122.47 121.97 122.97 3.4793 0 0 0 0.40738 1 29134 29134 0.79363 0 1 + 22028 18178 13721 13730 26275 26275 0.0012671097742895654 LGIFMTIL 8 Unmodified _LGIFMTIL_ 0 0 0 ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2;ENST00000505282.1_1_4:66959972-66960239:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF MSMS UPN47_class_I_Rep_1 2 454.27154541015625 2 454.269707 906.524861 NaN NaN NaN NaN NaN NaN NaN 28.477 1 32.243 31.743 32.743 3.7662 0 0 0 0.40404 1 4391 4391 5.2307 0 1 22029 5091 13722 13731 26276 26276 0.06785989178945329 LGIFMTILL 9 Unmodified _LGIFMTILL_ 0 0 0 ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2;ENST00000505282.1_1_4:66959972-66960239:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF MSMS UPN48_class_I_Rep_1 5 510.81353759765625 2 510.811739 1019.60893 NaN NaN NaN NaN NaN NaN NaN 47.637 1 51.159 50.659 51.659 3.5219 0 0 0 0.35339 1 9435 9435 7.9102 0 1 22030 5091 13723 13732 26277 26277 0.09990520275846393 LGIFMTILL 9 Unmodified _LGIFMTILL_ 0 0 0 ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2;ENST00000505282.1_1_4:66959972-66960239:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF ENST00000527146.1_2_11:308871-309162:+|nuORF MSMS UPN48_class_I_Rep_2 6 510.8136901855469 2 510.811739 1019.60893 NaN NaN NaN NaN NaN NaN NaN 47.52 1 51.256 50.756 51.756 3.7361 0 0 0 0.35339 1 9394 9394 7.9102 0 1 22031 5091 13723 13732 26278 26278 0.09990520275846393 LGIHPLRY 8 Unmodified _LGIHPLRY_ 0 0 0 L1MA2_dup1098|chr3:17633947-17634865:+|1.1649422888884464|0.0070689570762555|7.36|151.0|54|3|anti-sense L1MA2_dup1098|chr3:17633947-17634865:+|1.1649422888884464|0.0070689570762555|7.36|151.0|54|3|anti-sense L1MA2_dup1098|chr3:17633947-17634865:+|1.1649422888884464|0.0070689570762555|7.36|151.0|54|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 484.8809509277344 2 484.787444 967.560336 0.24531 0.00011892 -1.0991 -0.00053284 -0.85381 -0.00041391 484.7878891893441 62.953 0.086933 66.462 66.396 66.482 3.5091 7 5 2 0 0 0 0.72333 1 14029 14029 2.5775 0 1 43669 22032 9327 13724 13733 26279 26279 0.07525787750932977 LGIITSGIYLR 11 Unmodified _LGIITSGIYLR_ 0 0 0 L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|29|2|sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|29|2|sense L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|29|2|sense MSMS UPN47_class_I_Rep_3 4 603.3677368164062 2 603.366256 1204.71796 NaN NaN NaN NaN NaN NaN NaN 73.521 1 76.757 76.257 77.257 3.2363 0 0 0 0.38417 1 18161 18161 2.9952 1.5133 1 22033 10970 13725 13734 26280 26280 0.12378822499658781 LGILKLPKKQ 10 Unmodified _LGILKLPKKQ_ 0 0 0 REV__nc|ENSG00000005700|Q9P2D0-3|IBTK REV__nc|ENSG00000005700|Q9P2D0-3|IBTK MSMS UPN48_class_I_Rep_3 7 569.3893432617188 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 70.165 1 73.678 73.178 74.178 3.5128 0 0 0 0.53105 1 16217 16217 0.40072 0 1 + 22034 22709 13726 13735 26281 26281 0.2016030712159136 LGILKLPKKQ 10 Unmodified _LGILKLPKKQ_ 0 0 0 REV__nc|ENSG00000005700|Q9P2D0-3|IBTK REV__nc|ENSG00000005700|Q9P2D0-3|IBTK MSMS UPN48_class_I_Rep_3 7 569.757568359375 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 111.67 1 115.33 114.83 115.83 3.6614 0 0 0 0.53105 1 26511 26511 0.40072 0 1 + 22035 22709 13726 13735 26282 26282 0.2016030712159136 LGIPANTTTL 10 Unmodified _LGIPANTTTL_ 0 0 0 AluSz_dup65945|chr12:9677713-9678010:-|1.0169917282977778|0.13841988801392|2.88|151.0|21|3|anti-sense AluSz_dup65945|chr12:9677713-9678010:-|1.0169917282977778|0.13841988801392|2.88|151.0|21|3|anti-sense AluSz_dup65945|chr12:9677713-9678010:-|1.0169917282977778|0.13841988801392|2.88|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 500.7874450683594 2 500.787307 999.560061 0.28735 0.0001439 0.15449 7.7368E-05 0.44184 0.00022127 500.78722588848905 54.123 0.83188 57.441 57.178 58.01 3.3187 104 44 3 0 0 0 0.53414 1 12143 12143 7.609 0.88579 1 568800 22036 358 13727 13736 26283 26283 0.060263232404167866 LGIQNPEM 8 Unmodified _LGIQNPEM_ 0 0 0 nc|ENSG00000136688|Q9NZH8-2|IL36G;ENSG00000136688|ENST00000259205|IL36G nc|ENSG00000136688|Q9NZH8-2|IL36G nc|ENSG00000136688|Q9NZH8-2|IL36G MSMS UPN47_class_I_Rep_3 4 451.22564697265625 2 451.226028 900.437503 NaN NaN NaN NaN NaN NaN NaN 34.973 1 38.237 37.737 38.737 3.2639 0 0 0 0.40604 1 6421 6421 2.5775 1.7838 1 22037 2981 13728 13737 26284 26284 -0.016698367626418076 LGIRNGRG 8 Unmodified _LGIRNGRG_ 0 0 0 REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense MSMS UPN47_class_I_Rep_2 3 421.75115966796875 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 79.87 1 83.239 82.739 83.739 3.3694 0 0 0 0.40625 1 19896 19896 2.3027 0 1 + 22038 31574 13729 13738 26285 26285 0.06114873397245901 LGIRNGRG 8 Unmodified _LGIRNGRG_ 0 0 0 REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense MSMS UPN47_class_I_Rep_2 3 421.7510986328125 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 79.917 1 83.287 82.787 83.787 3.3694 0 0 0 0.40625 1 19909 19909 2.3027 0 1 + 22039 31574 13729 13738 26286 26286 0.06114873397245901 LGIRNGRG 8 Unmodified _LGIRNGRG_ 0 0 0 REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 421.75115966796875 2 421.751393 841.488233 -0.56524 -0.00023839 0.46158 0.00019467 -0.10366 -4.372E-05 421.7514271669543 79.756 0.59222 83.051 82.756 83.348 3.295 90 61 2 0 0 0 0.82752 1 19964 19964 2.3027 0 1 65288 + 22040 31574 13729 13738 26287 26287 0.06114873397245901 LGIRNGRG 8 Unmodified _LGIRNGRG_ 0 0 0 REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 421.751393 841.488233 0.093612 3.9481E-05 0.24931 0.00010515 0.34292 0.00014463 421.7514366616031 82.947 0.30148 82.947 82.769 83.07 0 -0.10367 -2.7098E-05 NaN 2.3027 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 73576 + 22041 31574 13729 13738 0.06114873397245901 LGIRNGRG 8 Unmodified _LGIRNGRG_ 0 0 0 REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense REV__MER90_dup392|chrX:37794090-37794583:-|2.6102787692976297|0.3359251176691735|2.96|150.0|30|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 421.751393 841.488233 0.02164 9.1265E-06 -0.027887 -1.1761E-05 -0.0062473 -2.6348E-06 421.75117680984005 79.688 0.3549 83.153 82.854 83.209 3.465 0.1024 -0.00026091 NaN 2.3027 45 37 2 NaN NaN NaN NaN 0 NaN NaN 0 56910 + 22042 31574 13729 13738 0.06114873397245901 LGISQNVIPPL 11 Unmodified _LGISQNVIPPL_ 0 0 0 L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|301|3|anti-sense L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|301|3|anti-sense L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|301|3|anti-sense MSMS UPN47_class_I_Rep_2 3 575.84326171875 2 575.845156 1149.67576 NaN NaN NaN NaN NaN NaN NaN 84.139 1 87.551 87.051 88.051 3.4116 0 0 0 0.38417 1 20984 20984 2.7352 0.43246 1 22043 14872 13730 13739 26288 26288 0.10690847091291289 LGISYLHY 8 Unmodified _LGISYLHY_ 0 0 0 L1MC1_dup9590|chr12:12770421-12771242:+|1.527535363868613|0.0223026532790724|6.1|151.0|16|2|sense L1MC1_dup9590|chr12:12770421-12771242:+|1.527535363868613|0.0223026532790724|6.1|151.0|16|2|sense L1MC1_dup9590|chr12:12770421-12771242:+|1.527535363868613|0.0223026532790724|6.1|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 483.2584228515625 2 483.258185 964.501818 NaN NaN NaN NaN NaN NaN NaN 45.871 1 45.871 45.371 46.371 0 0 0 0 0.40364 1 9361 9361 5.7604 0 1 22044 11217 13731 13740 26289 26289 0.018146863858078177 LGIVFHAF 8 Unmodified _LGIVFHAF_ 0 0 0 REV__L1PA5_dup4307|chr6:49473415-49477579:+|1.3321493655660486|0.2407611955267065|2.47|151.0|224|3|anti-sense REV__L1PA5_dup4307|chr6:49473415-49477579:+|1.3321493655660486|0.2407611955267065|2.47|151.0|224|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2691650390625 2 452.257988 902.501424 NaN NaN NaN NaN NaN NaN NaN 40.951 1 40.951 40.451 41.451 0 0 0 0 0.40738 1 7984 7984 0.79363 0 1 + 22045 29760 13732 13741 26290 26290 0.0462731145661337 LGIWVHIYT 9 Unmodified _LGIWVHIYT_ 0 0 0 L1ME3_dup116|chr1:35836019-35836437:-|2.917820625677861|0.2091766112187243|3.8|151.0|15|3|sense L1ME3_dup116|chr1:35836019-35836437:-|2.917820625677861|0.2091766112187243|3.8|151.0|15|3|sense L1ME3_dup116|chr1:35836019-35836437:-|2.917820625677861|0.2091766112187243|3.8|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 551.3103637695312 2 551.30821 1100.60187 NaN NaN NaN NaN NaN NaN NaN 55.758 1 59.261 58.761 59.761 3.5031 0 0 0 0.39428 1 11932 11932 2.0598 0.21551 1 22046 12581 13733 13742 26291 26291 0.055589237196272734 LGKHAKPR 8 Unmodified _LGKHAKPR_ 0 0 0 REV__HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|134|3|sense REV__HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|134|3|sense MSMS UPN47_class_I_Rep_1 2 453.7846984863281 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 54.295 1 57.796 57.296 58.296 3.5014 0 0 0 0.40746 1 12236 12236 0.69038 0 1 + 22047 23625 13734 13743 26292 26292 0.09936323328031449 LGKHAKPR 8 Unmodified _LGKHAKPR_ 0 0 0 REV__HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|134|3|sense REV__HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|134|3|sense MSMS UPN47_class_I_Rep_2 3 453.7855224609375 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 28.355 1 31.853 31.353 32.353 3.4986 0 0 0 0.40746 1 4388 4388 0.69038 0 1 + 22048 23625 13734 13743 26293 26293 0.09936323328031449 LGKKRKKK 8 Unmodified _LGKKRKKK_ 0 0 0 REV__ENSG00000257315|ENST00000550078|ZBED6 REV__ENSG00000257315|ENST00000550078|ZBED6 MSMS UPN48_class_I_Rep_3 7 493.353759765625 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 107.98 1 111.66 111.16 112.16 3.6813 0 0 0 0.40746 1 25509 25509 0.69038 0 1 + 22049 21386 13735 13744 26294 26294 0.1990601783869579 LGKKYRIRF 9 Unmodified _LGKKYRIRF_ 0 0 0 Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_2 3 590.866943359375 2 590.8693 1179.72405 NaN NaN NaN NaN NaN NaN NaN 96.24 1 99.719 99.219 100.22 3.4791 0 0 0 0.39518 1 23657 23657 1.8442 0 1 22050 33253 13736 13745 26295 26295 0.1413738552180348 LGKKYRIRF 9 Unmodified _LGKKYRIRF_ 0 0 0 Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 590.8658447265625 2 590.8693 1179.72405 0.50773 0.0003 -2.4409 -0.0014422 -1.9331 -0.0011422 591.3705695462049 96.199 0.19658 99.613 99.545 99.742 3.414 38 29 2 0 0 0 0.50088 1 23875 23875 0.52476 0 1 70876 22051 33253 13736 13745 26296 26296 0.1413738552180348 LGKKYRIRF 9 Unmodified _LGKKYRIRF_ 0 0 0 Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense Tigger17a_dup1813|chr14:91298995-91299595:-|1.2790757909964576|0.0174559746385818|6.2|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_3 4 590.8681640625 2 590.8693 1179.72405 NaN NaN NaN NaN NaN NaN NaN 98.147 1 101.57 101.07 102.07 3.4216 0 0 0 0.4007 1 24310 24310 0.52476 0 1 22052 33253 13736 13745 26297 26297 0.1413738552180348 LGKLQSTYKR 10 Unmodified _LGKLQSTYKR_ 0 0 0 REV__Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|42|1|anti-sense REV__Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.8554077148438 2 597.35368 1192.69281 0.45339 0.00027083 2.7529 0.0016445 3.2063 0.0019153 597.8559760840483 83.638 0.18918 87.204 87.149 87.338 3.5655 38 23 2 0 0 0 0.56354 1 20931 20931 1.3295 0 1 78862 + 22053 32781 13737 13746 26298 26298 0.10416767697074647 LGKRVQLV 8 Unmodified _LGKRVQLV_ 0 0 0 ENST00000468825.1_1_7:22179621-22184834:-|nuORF;nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5 ENST00000468825.1_1_7:22179621-22184834:-|nuORF ENST00000468825.1_1_7:22179621-22184834:-|nuORF MSMS UPN47_class_I_Rep_3 4 456.80328369140625 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 32.147 1 35.446 34.946 35.946 3.2991 0 0 0 0.40625 1 5571 5571 2.3027 0 1 22054 2957 13738 13747 26299 26299 0.1323036078504174 LGKSSEHLLR 10 Unmodified _LGKSSEHLLR_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MULTI-MSMS UPN47_class_I_Rep_3 4 570.3297729492188 2 570.330205 1138.64586 0.44574 0.00025422 -0.325 -0.00018535 0.12074 6.8863E-05 570.329974709936 49.359 0.98225 52.593 52.029 53.011 3.2345 105 59 2 0 0 0 0.4965 1 10893 10893 12.241 0 1 135240 22055 2605 13739 13748 26300 26300 0.08207908145936926 LGKVSIQQSF 10 Unmodified _LGKVSIQQSF_ 0 0 0 REV__ENST00000497341.5_1_2:27480525-27481182:-|nuORF REV__ENST00000497341.5_1_2:27480525-27481182:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.8142700195312 2 553.813856 1105.61316 -0.0017723 -9.8155E-07 -0.019478 -1.0787E-05 -0.021251 -1.1769E-05 553.813728737301 39.995 1.3541 43.662 43.186 44.54 3.6668 237 104 3 0 0 0 0.53794 1 8022 8022 7.1017 0 1 758870 + 22056 22667 13740 13749 26301 26301 0.06457701023077789 LGKVSIQQSF 10 Unmodified _LGKVSIQQSF_ 0 0 0 REV__ENST00000497341.5_1_2:27480525-27481182:-|nuORF REV__ENST00000497341.5_1_2:27480525-27481182:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 554.176025390625 2 553.813856 1105.61316 0.041504 2.2986E-05 0.043785 2.4249E-05 0.085289 4.7234E-05 553.8137706086502 40.395 1.3272 43.766 43.336 44.663 3.3712 215 103 3 0 0 0 0.56118 1 8300 8300 2.9952 0 1 587020 + 22057 22667 13740 13749 26302 26302 0.06457701023077789 LGKVVCPEL 9 Unmodified _LGKVVCPEL_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS UPN47_class_I_Rep_1 2 479.2774353027344 2 479.275521 956.536489 NaN NaN NaN NaN NaN NaN NaN 77.961 1 81.39 80.89 81.89 3.4289 0 0 0 0.39428 1 19365 19365 2.0598 0 1 22058 4499 13741 13750 26303 26303 0.05648186202256511 LGLDPVIPS 9 Unmodified _LGLDPVIPS_ 0 0 0 REV__ENST00000494005.1_1_3:49737934-49739366:+|nuORF REV__ENST00000494005.1_1_3:49737934-49739366:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 455.7658386230469 2 455.765843 909.517133 0.12246 5.5813E-05 -0.28589 -0.0001303 -0.16343 -7.4485E-05 455.7656612952812 82.525 0.18596 86.037 85.935 86.121 3.5122 27 20 2 0 0 0 0.41259 1 20625 20625 7.2892 0 1 68843 + 22059 20027 13742 13751 26304 26304 0.05875553183000193 LGLDPVIPS 9 Unmodified _LGLDPVIPS_ 0 0 0 REV__ENST00000494005.1_1_3:49737934-49739366:+|nuORF REV__ENST00000494005.1_1_3:49737934-49739366:+|nuORF MSMS UPN47_class_I_Rep_1 2 455.765625 2 455.765843 909.517133 NaN NaN NaN NaN NaN NaN NaN 82.702 1 86.24 85.74 86.74 3.5386 0 0 0 0.28335 1 20668 20668 11.64 0 1 + 22060 20027 13742 13751 26305 26305 0.05875553183000193 LGLDPVIPS 9 Unmodified _LGLDPVIPS_ 0 0 0 REV__ENST00000494005.1_1_3:49737934-49739366:+|nuORF REV__ENST00000494005.1_1_3:49737934-49739366:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 455.765843 909.517133 -0.015679 -7.1461E-06 0.0073912 3.3687E-06 -0.0082882 -3.7775E-06 455.76573850316083 82.649 0.1028 86.047 86.01 86.113 3.3984 0.0053279 0.00017792 NaN 7.2892 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 32717 + 22061 20027 13742 13751 0.05875553183000193 LGLHFAVLR 9 Unmodified _LGLHFAVLR_ 0 0 0 REV__nc|ENSG00000021574|Q9UBP0-2|SPAST REV__nc|ENSG00000021574|Q9UBP0-2|SPAST MSMS UPN48_class_I_Rep_2 6 513.31689453125 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 51.64 1 55.279 54.779 55.779 3.639 0 0 0 0.36505 1 10662 10662 7.2892 2.0586 1 + 22062 17606 13743 13752 26306 26306 0.10686049676360199 LGLHFAVLR 9 Unmodified _LGLHFAVLR_ 0 0 0 REV__nc|ENSG00000021574|Q9UBP0-2|SPAST REV__nc|ENSG00000021574|Q9UBP0-2|SPAST MSMS UPN48_class_I_Rep_3 7 513.3172607421875 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 51.693 1 55.303 54.803 55.803 3.6105 0 0 0 0.36505 1 10616 10616 7.2892 2.0586 1 + 22063 17606 13743 13752 26307 26307 0.10686049676360199 LGLKSTILFLF 11 Unmodified _LGLKSTILFLF_ 0 0 0 L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|125|1|anti-sense L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|125|1|anti-sense L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|125|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3875732421875 2 626.389199 1250.76385 0.63452 0.00039746 -1.4781 -0.00092588 -0.84359 -0.00052842 626.3884508712663 103.74 0.42326 107.27 107.19 107.61 3.5289 102 66 2 0 0 0 0.59712 2 25214 25214;25237 5.2969 0 1 75588000 22064 11973 13744 13753 26308;26309 26308 0.14849467681892747 LGLLAPAGFL 10 Unmodified _LGLLAPAGFL_ 0 0 0 REV__ENSG00000159958|ENST00000291232|TNFRSF13C REV__ENSG00000159958|ENST00000291232|TNFRSF13C MSMS UPN46_class_I_Rep_3 1 486.2982177734375 2 486.299853 970.585153 NaN NaN NaN NaN NaN NaN NaN 53.691 1 53.691 53.191 54.191 0 0 0 0 0.53105 1 11571 11571 24.674 1.5255 1 + 22065 19875 13745 13754 26310 26310 0.09868422833653767 LGLLEVISA 9 Unmodified _LGLLEVISA_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-SECPEP UPN47_class_I_Rep_2 3 457.26409912109375 2 457.781493 913.548434 -0.083429 -3.8192E-05 -0.3347 -0.00015322 -0.41813 -0.00019141 457.781224515888 72.928 0.49353 76.225 76.146 76.64 3.2971 50 38 2 0 0 0 0.073107 1 17882 17882 29.082 5.061 1 83457 22066 2928 13746 13755 26311 26311 0.08820126217096913 LGLLEVISA 9 Unmodified _LGLLEVISA_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-SECPEP UPN47_class_I_Rep_2 3 457.26409912109375 2 457.781493 913.548434 -0.085691 -3.9228E-05 -0.3116 -0.00014265 -0.39729 -0.00018187 457.7812338092536 72.802 0.19642 76.099 75.964 76.16 3.2971 25 18 2 0 0 0 0.073107 1 17882 17882 29.082 5.061 1 71341 22067 2928 13746 13755 26312 26312 0.08820126217096913 LGLLLAWWLL 10 Unmodified _LGLLLAWWLL_ 0 0 0 REV__ENSG00000129009|ENST00000249842|ISLR REV__ENSG00000129009|ENST00000249842|ISLR MSMS UPN47_class_I_Rep_1 2 599.3751220703125 2 599.373352 1196.73215 NaN NaN NaN NaN NaN NaN NaN 94.889 1 98.64 98.14 99.14 3.7508 0 0 0 0.53105 1 23562 23562 0.45834 0 1 + 22068 18915 13747 13756 26313 26313 0.14165519718585529 LGLLWLFRIL 10 Unmodified _LGLLWLFRIL_ 0 0 0 L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|93|1|anti-sense L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|93|1|anti-sense L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|93|1|anti-sense MSMS UPN48_class_I_Rep_3 7 622.294921875 2 622.399902 1242.78525 NaN NaN NaN NaN NaN NaN NaN 70.784 1 74.302 73.802 74.802 3.5185 0 0 0 0.53105 1 16396 16396 0.45834 0 1 22069 13972 13748 13757 26314 26314 0.1735689750128131 LGLNCAIYA 9 Unmodified _LGLNCAIYA_ 0 0 0 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 MULTI-MSMS UPN47_class_I_Rep_2 3 469.2437744140625 2 469.244221 936.473888 -0.34484 -0.00016182 0.035748 1.6774E-05 -0.3091 -0.00014504 469.24422113541414 28.865 0.64523 32.364 32.08 32.725 3.4986 77 50 2 0 0 0 0.40174 1 4542 4542 7.9102 1.187 1 107730 22070 4208 13749 13758 26315 26315 0.0031104013405638398 LGLPARATR 9 Unmodified _LGLPARATR_ 0 0 0 AluSx_dup35107|chr5:179779436-179779754:+|1.0675509711449596|0.1046623176849558|3.35|151.0|15|2|anti-sense AluSx_dup35107|chr5:179779436-179779754:+|1.0675509711449596|0.1046623176849558|3.35|151.0|15|2|anti-sense AluSx_dup35107|chr5:179779436-179779754:+|1.0675509711449596|0.1046623176849558|3.35|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_2 3 477.79534912109375 2 477.795801 953.577048 NaN NaN NaN NaN NaN NaN NaN 107.53 1 111.06 110.56 111.56 3.5345 0 0 0 0.2408 1 26021 26021 13.906 0 1 22071 278 13750 13759 26316 26316 0.09840288636883088 LGLPRGASDLV 11 Unmodified _LGLPRGASDLV_ 0 0 0 REV__nc|ENSG00000162006|Q96KJ4|MSLNL REV__nc|ENSG00000162006|Q96KJ4|MSLNL MSMS UPN46_class_I_Rep_3 1 549.3189697265625 2 549.319306 1096.62406 NaN NaN NaN NaN NaN NaN NaN 95.591 1 95.591 95.091 96.091 0 0 0 0 0.38417 1 23215 23215 2.9952 0.69251 1 + 22072 19915 13751 13760 26317 26317 0.0796110339738334 LGLPSRVKIDN 11 Unmodified _LGLPSRVKIDN_ 0 0 0 REV__nc|ENSG00000149564|Q96AP7-2|ESAM REV__nc|ENSG00000149564|Q96AP7-2|ESAM MSMS UPN46_class_I_Rep_3 1 606.3613891601562 2 606.358962 1210.70337 NaN NaN NaN NaN NaN NaN NaN 31.264 1 31.264 30.764 31.764 0 0 0 0 0.38417 1 5201 5201 2.086 0.60411 1 + 22073 32012 13752 13761 26318 26318 0.10644750351525545 LGLQRLSVP 9 Unmodified _LGLQRLSVP_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MSMS UPN48_class_I_Rep_2 6 491.79620361328125 2 491.805834 981.597115 NaN NaN NaN NaN NaN NaN NaN 65.294 1 68.774 68.274 69.274 3.4792 0 0 0 0.38916 1 14832 14832 3.2813 0 1 + 22074 18225 13753 13762 26319 26319 0.10558039576858391 LGLSVWALI 9 Unmodified _LGLSVWALI_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|133|2|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|133|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8119812011719 2 486.299853 970.585153 NaN NaN NaN NaN NaN NaN NaN 64.499 1 67.855 67.355 68.355 3.3557 0 0 0 0.11494 1 15327 15327 21.747 2.4897 1 + 22075 27409 13754 13763 26320 26320 0.09868422833653767 LGLSWGRRSK 10 Unmodified _LGLSWGRRSK_ 0 0 0 REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|9|1|sense REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 580.3375244140625 2 580.338364 1158.66217 NaN NaN NaN NaN NaN NaN NaN 96.767 1 96.767 96.267 97.267 0 0 0 0 0.53105 1 23534 23534 1.4819 0.28856 1 + 22076 25932 13755 13764 26321 26321 0.08919034102700607 LGLTGVIGGEL 11 Unmodified _LGLTGVIGGEL_ 0 0 0 REV__LTR49-int_dup45|chr1:67015687-67017936:+|1.09271293071723|0.0439403430309399|4.64|151.0|89|1|anti-sense REV__LTR49-int_dup45|chr1:67015687-67017936:+|1.09271293071723|0.0439403430309399|4.64|151.0|89|1|anti-sense MSMS UPN47_class_I_Rep_2 3 514.8031005859375 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 54.351 1 57.67 57.17 58.17 3.3187 0 0 0 0.37149 1 12281 12281 7.609 0 1 + 22077 30953 13756 13765 26322 26322 0.0786689627452688 LGLVCCVEYEC 11 Unmodified _LGLVCCVEYEC_ 0 0 0 L1MD2_dup10311|chr20:32404297-32404906:-|1.3720185809248138|0.0072568703239068|7.56|150.0|48|3|anti-sense L1MD2_dup10311|chr20:32404297-32404906:-|1.3720185809248138|0.0072568703239068|7.56|150.0|48|3|anti-sense L1MD2_dup10311|chr20:32404297-32404906:-|1.3720185809248138|0.0072568703239068|7.56|150.0|48|3|anti-sense MSMS UPN48_class_I_Rep_2 6 615.7628784179688 2 615.763803 1229.51305 NaN NaN NaN NaN NaN NaN NaN 18.239 1 21.89 21.39 22.39 3.6509 0 0 0 0.38417 1 1191 1191 1.4819 0.68827 1 22078 11980 13757 13766 26323 26323 -0.09252363688869991 LGLVKPSLPV 10 Unmodified _LGLVKPSLPV_ 0 0 0 REV__AluSx_dup92235|chr16:30248204-30248498:+|2.632051465010235|0.0914627438546936|4.85|149.0|13|1|anti-sense REV__AluSx_dup92235|chr16:30248204-30248498:+|2.632051465010235|0.0914627438546936|4.85|149.0|13|1|anti-sense MSMS UPN48_class_I_Rep_3 7 511.8323974609375 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 19.5 1 23.122 22.622 23.622 3.6215 0 0 0 0.53105 1 1485 1485 0.40072 0.40072 1 + 22079 17159 13758 13767 26324 26324 0.14360667413518513 LGLVTLNRYSF 11 Unmodified _LGLVTLNRYSF_ 0 0 0 REV__L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|37|2|anti-sense REV__L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|37|2|anti-sense MSMS UPN46_class_I_Rep_3 1 641.8585205078125 2 641.861338 1281.70812 NaN NaN NaN NaN NaN NaN NaN 108.22 1 108.22 107.72 108.72 0 0 0 0 0.37149 1 26450 26450 7.609 0.50723 1 + 22080 26469 13759 13768 26325 26325 0.07853634494290418 LGLWLPIAWGL 11 Unmodified _LGLWLPIAWGL_ 0 0 0 REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|129|1|anti-sense REV__L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|129|1|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8695068359375 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.142 1 89.848 89.348 90.348 3.7058 0 0 0 0.38417 1 20511 20511 1.4819 0 1 + 22081 24077 13760 13769 26326 26326 0.11296331713197105 LGNDLSKMNFP 11 Unmodified _LGNDLSKMNFP_ 0 0 0 L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|132|1|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|132|1|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|132|1|anti-sense MSMS UPN47_class_I_Rep_2 3 618.3097534179688 2 618.308081 1234.60161 NaN NaN NaN NaN NaN NaN NaN 19.553 1 22.95 22.45 23.45 3.3963 0 0 0 0.38417 1 1864 1864 4.897 0 1 22082 15108 13761 13770 26327 26327 -0.006308640625547923 LGNLTFIQYY 10 Unmodified _LGNLTFIQYY_ 0 0 0 L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|34|3|anti-sense L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|34|3|anti-sense L1MC4_dup19403|chr14:60267702-60268258:-|1.0944103861004857|0.0999544997007389|3.45|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_3 7 616.32421875 2 616.321514 1230.62847 NaN NaN NaN NaN NaN NaN NaN 43.302 1 46.94 46.44 47.44 3.6385 0 0 0 0.53105 1 8041 8041 2.9952 0 1 22083 11436 13762 13771 26328 26328 0.02238567820290882 LGNRDMGRPM 10 Unmodified _LGNRDMGRPM_ 0 0 0 nc|ENSG00000198720|Q86YJ7-2|ANKRD13B;ENST00000487527.5_1_17:27916841-27940597:+|nuORF;ENSG00000198720|ENST00000394859|ANKRD13B nc|ENSG00000198720|Q86YJ7-2|ANKRD13B nc|ENSG00000198720|Q86YJ7-2|ANKRD13B MSMS UPN47_class_I_Rep_2 3 573.7804565429688 2 573.778967 1145.54338 NaN NaN NaN NaN NaN NaN NaN 18.376 1 21.766 21.266 22.266 3.3898 0 0 0 0.53105 1 1543 1543 1.1933 0 1 22084 5449 13763 13772 26329 26329 -0.023568241888369812 LGNRVRLHK 9 Unmodified _LGNRVRLHK_ 0 0 0 AluSz_dup82239|chr16:29523361-29523663:+|2.718198674073042|0.0454576788890262|5.9|150.0|11|3|sense AluSz_dup82239|chr16:29523361-29523663:+|2.718198674073042|0.0454576788890262|5.9|150.0|11|3|sense AluSz_dup82239|chr16:29523361-29523663:+|2.718198674073042|0.0454576788890262|5.9|150.0|11|3|sense MSMS UPN47_class_I_Rep_2 3 546.8412475585938 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.762 1 96.227 95.727 96.727 3.4652 0 0 0 0.39518 1 22918 22918 1.8442 0 1 22085 365 13764 13773 26330 26330 0.12542757685150718 LGNTARLPVS 10 Unmodified _LGNTARLPVS_ 0 0 0 AluJr_dup76090|chr19:4039565-4039699:-|1.14606981088747|0.0153717184776919|6.22|151.0|5|3|sense AluJr_dup76090|chr19:4039565-4039699:-|1.14606981088747|0.0153717184776919|6.22|151.0|5|3|sense AluJr_dup76090|chr19:4039565-4039699:-|1.14606981088747|0.0153717184776919|6.22|151.0|5|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.2984008789062 2 514.298373 1026.58219 0.33644 0.00017303 -0.16633 -8.5544E-05 0.17011 8.7487E-05 514.2981578640962 87.422 0.49267 91.059 90.844 91.337 3.6372 71 57 2 0 0 0 0.56333 1 21858 21858 1.4819 0.28856 1 85463 22086 181 13765 13774 26331 26331 0.06996547708831713 LGPFSLPEL 9 Unmodified _LGPFSLPEL_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.7725830078125 2 486.773668 971.532783 NaN NaN NaN NaN NaN NaN NaN 39.276 1 42.941 42.441 43.441 3.6652 0 0 0 0.13551 1 7663 7663 20.454 0 1 22087 4305 13766 13775 26332 26332 0.0458783970004788 LGPLRKTK 8 Unmodified _LGPLRKTK_ 0 0 0 L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|175|3|anti-sense L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|175|3|anti-sense L1M3de_dup137|chr5:170062648-170065496:+|1.9394941166039696|0.0278308118358076|6.12|151.0|175|3|anti-sense MSMS UPN48_class_I_Rep_1 5 456.793701171875 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 49.207 1 52.731 52.231 53.231 3.5239 0 0 0 0.40738 1 9919 9919 0.79363 0 1 22088 8789 13767 13776 26333 26333 0.13230360785019002 LGPNYLCYEK 10 Unmodified _LGPNYLCYEK_ 0 0 0 REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF REV__ENST00000564508.2_1_16:72460469-72460685:+|nuORF MSMS UPN47_class_I_Rep_2 3 600.2691650390625 2 600.291899 1198.56925 NaN NaN NaN NaN NaN NaN NaN 33.803 1 37.242 36.742 37.742 3.4398 0 0 0 0.53105 1 6033 6033 1.3295 0 1 + 22089 23050 13768 13777 26334 26334 -0.02209651465591378 LGPYQPQLA 9 Unmodified _LGPYQPQLA_ 0 0 0 REV__ENST00000549982.5_1_12:93897078-93897288:+|nuORF REV__ENST00000549982.5_1_12:93897078-93897288:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.76898193359375 2 493.768917 985.523281 0.22529 0.00011124 -0.022729 -1.1223E-05 0.20256 0.00010002 493.7688160655461 54.233 0.73397 57.418 57.175 57.909 3.1856 72 45 2 0 0 0 0.41259 1 12326 12326 7.2892 0 1 90769 + 22090 22952 13769 13778 26335 26335 0.0299407141451411 LGQFSPGYKSF 11 Unmodified _LGQFSPGYKSF_ 0 0 0 L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|136|3|anti-sense L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|136|3|anti-sense L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|136|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 615.812255859375 2 615.811313 1229.60807 0.62552 0.0003852 0.26056 0.00016046 0.88608 0.00054566 615.8115476347172 67.293 0.96441 70.801 70.328 71.292 3.5077 191 78 3 0 0 0 0.63951 1 15486 15486 4.1895 0.24511 1 835100 22091 11504 13770 13779 26336 26336 0.002453971604609251 LGQGLLHIF 9 Unmodified _LGQGLLHIF_ 0 0 0 REV__LTR22_dup32|chr7:19701470-19702029:+|1.3081684778736178|0.1106323124698009|3.56|151.0|12|2|sense REV__LTR22_dup32|chr7:19701470-19702029:+|1.3081684778736178|0.1106323124698009|3.56|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.2957763671875 2 499.295102 996.575651 0.24439 0.00012202 0.35681 0.00017815 0.6012 0.00030017 499.2951675333739 68.089 0.86156 71.54 71.191 72.052 3.4517 157 73 3 0 0 0 0.12799 1 15607 15607 28.487 1.6032 1 518750 + 22092 30878 13771 13780 26337 26337 0.07722654548126684 LGQKCPIFPG 10 Unmodified _LGQKCPIFPG_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|108|2|anti-sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|108|2|anti-sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|108|2|anti-sense MSMS UPN47_class_I_Rep_1 2 530.2885131835938 2 530.28642 1058.55829 NaN NaN NaN NaN NaN NaN NaN 49.639 1 53.298 52.798 53.798 3.6592 0 0 0 0.53105 1 10815 10815 3.9444 0.3479 1 22093 13500 13772 13781 26338 26338 0.03134990950820793 LGQRLLFFFLL 11 Unmodified _LGQRLLFFFLL_ 0 0 0 REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|18|3|anti-sense REV__AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|18|3|anti-sense MSMS UPN48_class_I_Rep_1 5 456.27978515625 3 456.279703 1365.81728 NaN NaN NaN NaN NaN NaN NaN 116.23 1 119.86 119.36 120.36 3.6254 0 0 0 0.38417 1 28296 28296 0.094841 0 1 + 22094 17064 13773 13782 26339 26339 0.14900265184428463 LGRFLGIVLES 11 Unmodified _LGRFLGIVLES_ 0 0 0 REV__L1PA8_dup4331|chr8:144986171-144987739:-|1.0143685302307182|0.0975322805196|3.38|150.0|56|1|anti-sense REV__L1PA8_dup4331|chr8:144986171-144987739:-|1.0143685302307182|0.0975322805196|3.38|150.0|56|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.3599243164062 2 602.358431 1202.70231 NaN NaN NaN NaN NaN NaN NaN 95.202 1 99.103 98.603 99.603 3.9016 0 0 0 0.38417 1 22566 22566 1.1933 0 1 + 22095 30229 13774 13783 26340 26340 0.1090653598262179 LGRHNDWQSS 10 Unmodified _LGRHNDWQSS_ 0 0 0 ENST00000485565.6_1_9:91041454-91083353:+|nuORF ENST00000485565.6_1_9:91041454-91083353:+|nuORF ENST00000485565.6_1_9:91041454-91083353:+|nuORF MSMS UPN48_class_I_Rep_1 5 600.2821655273438 2 600.281243 1198.54793 NaN NaN NaN NaN NaN NaN NaN 39.705 1 43.209 42.709 43.709 3.5048 0 0 0 0.53105 1 7043 7043 1.4819 0.15237 1 22096 7032 13775 13784 26341 26341 -0.043399004500543015 LGRKQIKGL 9 Unmodified _LGRKQIKGL_ 0 0 0 MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|17|3|sense MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|17|3|sense MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.8349304199219 2 506.834926 1011.6553 0.24316 0.00012324 -0.1916 -9.7111E-05 0.051557 2.6131E-05 506.83474329909467 53.377 1.1642 56.897 56.527 57.691 3.5192 139 84 3 0 0 0 0.3898 1 11178 11178 8.5933 0 1 517840 22097 15847 13776 13785 26342 26342 0.14993721222128897 LGRQGSLAV 9 Unmodified _LGRQGSLAV_ 0 0 0 ENST00000400780.8_1_8:145538049-145538253:+|nuORF ENST00000400780.8_1_8:145538049-145538253:+|nuORF ENST00000400780.8_1_8:145538049-145538253:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 450.76617431640625 2 450.766709 899.518865 -0.5496 -0.00024774 0.028041 1.264E-05 -0.52156 -0.0002351 450.7665522025698 28.107 0.87535 31.606 31.296 32.172 3.4986 153 73 3 0 0 0 0.10817 1 4311 4311 32.305 1.6689 1 202630 22098 6596 13777 13786 26343 26343 0.06508606991610577 LGRYAHLL 8 Unmodified _LGRYAHLL_ 0 0 0 REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B MULTI-MSMS UPN47_class_I_Rep_2 3 471.7952880859375 2 471.779619 941.544686 0.083406 3.9349E-05 -1.5816 -0.00074617 -1.4982 -0.00070682 471.77870272874947 74.191 0.22218 77.496 77.356 77.579 3.3048 26 22 2 0 0 0 0.82752 1 18291 18291 5.7604 0 1 38956 + 22099 19575 13778 13787 26344 26344 0.07157501233893981 LGRYTKELK 9 Unmodified _LGRYTKELK_ 0 0 0 L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense L1MB2_dup7390|chr16:89357377-89357699:+|1.372199568527206|0.0269298084849476|5.67|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 554.3316650390625 2 554.329673 1106.64479 NaN NaN NaN NaN NaN NaN NaN 87.441 1 87.441 86.941 87.941 0 0 0 0 0.3967 1 20949 20949 1.4819 0.68827 1 22100 10282 13779 13788 26345 26345 0.09573693777042536 LGSEGKVEQY 10 Unmodified _LGSEGKVEQY_ 0 0 0 LTR37B_dup49|chr1:89650218-89650620:-|1.3259806715557751|0.0134360994137458|6.62|151.0|1|1|sense LTR37B_dup49|chr1:89650218-89650620:-|1.3259806715557751|0.0134360994137458|6.62|151.0|1|1|sense LTR37B_dup49|chr1:89650218-89650620:-|1.3259806715557751|0.0134360994137458|6.62|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 555.2775268554688 2 555.277303 1108.54005 -0.12097 -6.7172E-05 -0.65009 -0.00036098 -0.77106 -0.00042815 555.2768030570331 34.348 0.9558 37.612 37.306 38.261 3.2639 141 70 3 0 0 0 0.55949 1 6163 6163 4.1895 1.1943 1 417650 22101 15629 13780 13789 26346 26346 -0.009874724901919762 LGSIKFIASPK 11 Unmodified _LGSIKFIASPK_ 0 0 0 REV__ENST00000530208.1_1_11:86014499-86055761:+|nuORF REV__ENST00000530208.1_1_11:86014499-86055761:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 581.2770385742188 2 580.855524 1159.69649 0.56896 0.00033048 0.45238 0.00026277 1.0213 0.00059325 580.855644355574 60.291 0.22803 63.765 63.693 63.921 3.4737 22 15 2 0 0 0 0.59293 1 13353 13353 5.4027 0.5057 1 91874 + 22102 19608 13781 13790 26347 26347 0.12303437470927747 LGSINLRKPV 10 Unmodified _LGSINLRKPV_ 0 0 0 Charlie4a_dup861|chr4:77805374-77805823:+|1.002403934855319|0.0580728287002059|4.11|151.0|11|3|sense Charlie4a_dup861|chr4:77805374-77805823:+|1.002403934855319|0.0580728287002059|4.11|151.0|11|3|sense Charlie4a_dup861|chr4:77805374-77805823:+|1.002403934855319|0.0580728287002059|4.11|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.8458251953125 2 548.84549 1095.67643 0.47421 0.00026027 0.039852 2.1872E-05 0.51407 0.00028214 548.8454015245841 51.141 1.0563 54.665 54.163 55.219 3.5246 170 73 3 0 0 0 0.52083 1 10613 10613 9.3831 0.63772 1 700690 22103 525 13782 13791 26348 26348 0.1324168653097786 LGSIVFRR 8 Unmodified _LGSIVFRR_ 0 0 0 ENSG00000175311|ENST00000311620|ANKS4B ENSG00000175311|ENST00000311620|ANKS4B ENSG00000175311|ENST00000311620|ANKS4B MSMS UPN47_class_I_Rep_2 3 474.28265380859375 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 109.91 1 113.45 112.95 113.95 3.5307 0 0 0 0.40404 1 26779 26779 5.2307 0 1 22104 4718 13783 13792 26349 26349 0.09581190125220473 LGSIVFRR 8 Unmodified _LGSIVFRR_ 0 0 0 ENSG00000175311|ENST00000311620|ANKS4B ENSG00000175311|ENST00000311620|ANKS4B ENSG00000175311|ENST00000311620|ANKS4B MSMS UPN48_class_I_Rep_1 5 474.28228759765625 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 109.57 1 113.2 112.7 113.7 3.6321 0 0 0 0.40404 1 26611 26611 5.2307 0 1 22105 4718 13783 13792 26350 26350 0.09581190125220473 LGSIYRILGW 10 Unmodified _LGSIYRILGW_ 0 0 0 REV__ENSG00000044446|ENST00000379942|PHKA2 REV__ENSG00000044446|ENST00000379942|PHKA2 MSMS UPN47_class_I_Rep_1 2 589.3423461914062 2 589.340041 1176.66553 NaN NaN NaN NaN NaN NaN NaN 84.11 1 87.675 87.175 88.175 3.5655 0 0 0 0.53105 1 21043 21043 1.6526 0 1 + 22106 17656 13784 13793 26351 26351 0.0842628415668969 LGSKETPAF 9 Unmodified _LGSKETPAF_ 0 0 0 ENST00000234313.7_1_2:68622856-68622979:+|nuORF ENST00000234313.7_1_2:68622856-68622979:+|nuORF ENST00000234313.7_1_2:68622856-68622979:+|nuORF MSMS UPN46_class_I_Rep_3 1 475.2697448730469 2 475.2531 948.491647 NaN NaN NaN NaN NaN NaN NaN 41.638 1 41.638 41.138 42.138 0 0 0 0 0.381 1 8179 8179 5.2307 0 1 22107 5891 13785 13794 26352 26352 0.01534078660574778 LGSSSLPALV 10 Unmodified _LGSSSLPALV_ 0 0 0 AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|21|2|anti-sense AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|21|2|anti-sense AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.2763671875 2 472.276575 942.538597 -0.18058 -8.5284E-05 -0.56286 -0.00026582 -0.74344 -0.00035111 472.27605566937655 44.263 0.68181 47.618 47.313 47.995 3.3556 87 43 3 0 0 0 0.38932 1 9235 9235 20.454 5.6154 1 180940 22108 86 13786 13795 26353 26353 0.06502938211701803 LGSSSLPALV 10 Unmodified _LGSSSLPALV_ 0 0 0 AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|21|2|anti-sense AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|21|2|anti-sense AluJo_dup10250|chr2:144394990-144395297:-|1.3720431402463926|0.1056385044936042|3.7|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.27618408203125 2 472.276575 942.538597 -0.25405 -0.00011998 -0.36592 -0.00017282 -0.61997 -0.0002928 472.2761139236807 44.46 0.80145 47.704 47.288 48.089 3.2441 85 48 3 0 0 0 0.46161 1 9347 9347 14.838 4.0143 1 195650 22109 86 13786 13795 26354 26354 0.06502938211701803 LGSWNVIMFVC 11 Unmodified _LGSWNVIMFVC_ 0 0 0 ENSG00000109424|ENST00000262999|UCP1 ENSG00000109424|ENST00000262999|UCP1 ENSG00000109424|ENST00000262999|UCP1 MSMS UPN47_class_I_Rep_2 3 634.8124389648438 2 634.811944 1267.60934 NaN NaN NaN NaN NaN NaN NaN 38.426 1 41.814 41.314 42.314 3.3879 0 0 0 0.38417 1 7438 7438 1.4819 0.8804 1 22110 1895 13787 13796 26355 26355 -0.013764280666464401 LGSWSINSIY 10 Unmodified _LGSWSINSIY_ 0 0 0 L1ME3A_dup3282|chr3:125254267-125255236:-|3.572489685924569|0.0499042207681863|6.16|151.0|46|1|anti-sense L1ME3A_dup3282|chr3:125254267-125255236:-|3.572489685924569|0.0499042207681863|6.16|151.0|46|1|anti-sense L1ME3A_dup3282|chr3:125254267-125255236:-|3.572489685924569|0.0499042207681863|6.16|151.0|46|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2903442382812 2 570.290214 1138.56587 0.44237 0.00025228 -0.14993 -8.5506E-05 0.29243 0.00016677 570.2901850782062 73.686 1.6077 76.991 76.375 77.983 3.3048 459 154 5 0 0 0 0.47804 1 18267 18267 13.615 0 1 7372000 22111 12665 13788 13797 26356 26356 0.0021342175209611014 LGTEDLYGY 9 Unmodified _LGTEDLYGY_ 0 0 0 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MSMS UPN47_class_I_Rep_3 4 515.7393798828125 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 27.057 1 30.399 29.899 30.899 3.3422 0 0 0 0.39518 1 4053 4053 1.8442 0 1 22112 5756 13789 13798 26357 26357 -0.048062353015666304 LGTVRRVLG 9 Unmodified _LGTVRRVLG_ 0 0 0 ENST00000502759.1_1_4:14113753-14128775:+|nuORF ENST00000502759.1_1_4:14113753-14128775:+|nuORF ENST00000502759.1_1_4:14113753-14128775:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 64.712 1 67.967 67.467 68.467 3.2556 0 0 0 0.34056 1 15436 15436 8.5933 0 1 22113 7134 13790 13799 26358 26358 0.12232861671009232 LGVAAGATLAL 11 Unmodified _LGVAAGATLAL_ 0 0 0 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 MULTI-MSMS UPN47_class_I_Rep_1 2 478.79205322265625 2 478.792392 955.570232 0.13846 6.6295E-05 -0.077241 -3.6983E-05 0.061222 2.9313E-05 478.79218598845404 58.746 0.97365 62.163 61.594 62.567 3.4171 113 65 3 0 0 0 0.28469 1 13597 13597 17.113 0 1 163810 22114 3955 13791 13800 26359 26359 0.0906693096563913 LGVAAGATLAL 11 Unmodified _LGVAAGATLAL_ 0 0 0 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 MULTI-MSMS UPN47_class_I_Rep_2 3 478.7926330566406 2 478.792392 955.570232 0.22774 0.00010904 -0.53248 -0.00025495 -0.30475 -0.00014591 478.79203056992793 59.172 0.37707 62.454 62.377 62.754 3.2818 38 26 2 0 0 0 0.48412 1 13791 13791 8.1555 0 1 97994 22115 3955 13791 13800 26360 26360 0.0906693096563913 LGVAAGATLAL 11 Unmodified _LGVAAGATLAL_ 0 0 0 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 MULTI-MSMS UPN47_class_I_Rep_3 4 478.7921447753906 2 478.792392 955.570232 -0.025532 -1.2224E-05 0.19315 9.2477E-05 0.16761 8.0253E-05 478.79234423245015 59.062 0.69989 62.228 61.728 62.428 3.1658 63 41 3 0 0 0 0.29515 1 13796 13796 22.736 0 1 140660 22116 3955 13791 13800 26361 26361 0.0906693096563913 LGVAYFDSSF 10 Unmodified _LGVAYFDSSF_ 0 0 0 ENST00000547851.1_1_12:47610056-47610092:-|nuORF ENST00000547851.1_1_12:47610056-47610092:-|nuORF ENST00000547851.1_1_12:47610056-47610092:-|nuORF MSMS UPN48_class_I_Rep_1 5 553.2638549804688 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 68.227 1 71.679 71.179 72.179 3.4517 0 0 0 0.53105 1 15741 15741 6.2058 1.8765 1 22117 7388 13792 13801 26362 26362 -0.03529956030570247 LGVAYFDSSF 10 Unmodified _LGVAYFDSSF_ 0 0 0 ENST00000547851.1_1_12:47610056-47610092:-|nuORF ENST00000547851.1_1_12:47610056-47610092:-|nuORF ENST00000547851.1_1_12:47610056-47610092:-|nuORF MSMS UPN48_class_I_Rep_2 6 553.2642822265625 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 68.037 1 71.545 71.045 72.045 3.5083 0 0 0 0.53105 1 15666 15666 3.5965 0 1 22118 7388 13792 13801 26363 26363 -0.03529956030570247 LGVAYFDSSF 10 Unmodified _LGVAYFDSSF_ 0 0 0 ENST00000547851.1_1_12:47610056-47610092:-|nuORF ENST00000547851.1_1_12:47610056-47610092:-|nuORF ENST00000547851.1_1_12:47610056-47610092:-|nuORF MSMS UPN48_class_I_Rep_3 7 553.2637329101562 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 67.86 1 71.368 70.868 71.868 3.5077 0 0 0 0.53105 1 15523 15523 3.5965 1.5367 1 22119 7388 13792 13801 26364 26364 -0.03529956030570247 LGVFRFPVL 9 Unmodified _LGVFRFPVL_ 0 0 0 L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|33|1|anti-sense L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|33|1|anti-sense L1ME3C_dup3025|chr17:62009275-62009907:+|1.9042172727141904|0.0616786564160793|4.95|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 524.309326171875 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 52.718 1 56.237 55.737 56.737 3.5192 0 0 0 0.39428 1 10991 10991 2.0598 0 1 22120 12752 13793 13802 26365 26365 0.10623817961891291 LGVGLLEVIWP 11 Unmodified _LGVGLLEVIWP_ 0 0 0 nc|ENSG00000104894|P11049-3|CD37 nc|ENSG00000104894|P11049-3|CD37 nc|ENSG00000104894|P11049-3|CD37 MSMS UPN47_class_I_Rep_1 2 598.3590698242188 2 598.357899 1194.70125 NaN NaN NaN NaN NaN NaN NaN 83.74 1 87.306 86.806 87.806 3.5655 0 0 0 0.38417 1 20949 20949 1.4819 0.15237 1 22121 16653 13794 13803 26366 26366 0.11168321613718035 LGVGQPPARLV 11 Unmodified _LGVGQPPARLV_ 0 0 0 REV__ENST00000319296.9_1_16:30418714-30419448:+|nuORF REV__ENST00000319296.9_1_16:30418714-30419448:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.8377685546875 2 553.837665 1105.66078 0.060233 3.3359E-05 -0.31554 -0.00017476 -0.25531 -0.0001414 553.8374410226396 42.694 0.93127 46.381 46.061 46.992 3.6875 114 65 2 0 0 0 0.61292 1 8825 8825 4.897 0 1 139630 + 22122 21728 13795 13804 26367 26367 0.11217400013924816 LGVGQPPARLV 11 Unmodified _LGVGQPPARLV_ 0 0 0 REV__ENST00000319296.9_1_16:30418714-30419448:+|nuORF REV__ENST00000319296.9_1_16:30418714-30419448:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 553.8375854492188 2 553.837665 1105.66078 0.12602 6.9796E-05 -0.21711 -0.00012024 -0.091088 -5.0448E-05 553.8375788238002 43.356 0.98724 46.714 46.238 47.226 3.358 78 62 2 0 0 0 0.48412 1 8948 8948 8.1555 0 1 110880 + 22123 21728 13795 13804 26368 26368 0.11217400013924816 LGVGRHKH 8 Unmodified _LGVGRHKH_ 0 0 0 L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|153|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|153|2|anti-sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|153|2|anti-sense MSMS UPN48_class_I_Rep_1 5 452.2669372558594 2 452.26721 902.519868 NaN NaN NaN NaN NaN NaN NaN 90.977 1 94.603 94.103 95.103 3.626 0 0 0 0.40738 1 21863 21863 0.79363 0 1 22124 8528 13796 13805 26369 26369 0.06470866151175869 LGVRGRGVP 9 Unmodified _LGVRGRGVP_ 0 0 0 REV__ENSG00000130540|ENST00000330884|SULT4A1 REV__ENSG00000130540|ENST00000330884|SULT4A1 MULTI-MSMS UPN47_class_I_Rep_1 2 455.7825927734375 2 455.782693 909.550834 0.19292 8.7929E-05 0.010613 4.8373E-06 0.20353 9.2766E-05 455.78256412236243 107.51 0.17258 111.18 111.12 111.3 3.6724 36 24 3 0 0 0 0.33654 1 26345 26345 11.64 3.047 1 2633200 + 22125 18941 13797 13806 26370 26370 0.09244019465415931 LGVRGRGVP 9 Unmodified _LGVRGRGVP_ 0 0 0 REV__ENSG00000130540|ENST00000330884|SULT4A1 REV__ENSG00000130540|ENST00000330884|SULT4A1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 455.782693 909.550834 0.19292 8.7929E-05 0.010613 4.8373E-06 0.20353 9.2766E-05 455.78256412236243 107.51 0.17258 111.18 111.12 111.3 3.6724 0.090363 8.4314E-05 NaN 11.64 36 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2633200 + 22126 18941 13797 13806 0.09244019465415931 LGVRGRGVP 9 Unmodified _LGVRGRGVP_ 0 0 0 REV__ENSG00000130540|ENST00000330884|SULT4A1 REV__ENSG00000130540|ENST00000330884|SULT4A1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 455.782693 909.550834 0.093095 4.2431E-05 -0.1311 -5.9754E-05 -0.038007 -1.7323E-05 455.7825566553733 107.49 0.092903 111.02 110.98 111.07 3.5345 -0.067387 -4.4869E-05 NaN 11.64 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1929600 + 22127 18941 13797 13806 0.09244019465415931 LGVRGRGVP 9 Unmodified _LGVRGRGVP_ 0 0 0 REV__ENSG00000130540|ENST00000330884|SULT4A1 REV__ENSG00000130540|ENST00000330884|SULT4A1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 455.782693 909.550834 -0.11837 -5.3952E-05 -0.22823 -0.00010402 -0.3466 -0.00015797 455.7824420367673 107.53 0.1047 111.07 111 111.1 3.5382 -0.022976 -0.0001334 NaN 11.64 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1985100 + 22128 18941 13797 13806 0.09244019465415931 LGVSVRVF 8 Unmodified _LGVSVRVF_ 0 0 0 Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|46|3|sense;MLT2B1_dup3414|chr12:104697212-104697648:+|3.21372000504365|0.0126715809345316|7.99|151.0|11|3|sense;Ricksha_c_dup509|chr7:43599065-43600465:-|1.7149340500939012|0.2730248237046512|2.65|151.0|21|2|sense Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|46|3|sense Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|46|3|sense MSMS UPN47_class_I_Rep_1 2 438.7693786621094 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 109.04 1 112.65 112.15 113.15 3.6046 0 0 0 0.388 1 26867 26867 12.532 0 1 22129 16503 13798 13807 26371 26371 0.0801469648533839 LGVTGAGLVVF 11 Unmodified _LGVTGAGLVVF_ 0 0 0 Harlequin-int_dup377|chr10:97555943-97559474:-|1.1888537662313383|0.1867708945572619|2.67|151.0|172|2|anti-sense Harlequin-int_dup377|chr10:97555943-97559474:-|1.1888537662313383|0.1867708945572619|2.67|151.0|172|2|anti-sense Harlequin-int_dup377|chr10:97555943-97559474:-|1.1888537662313383|0.1867708945572619|2.67|151.0|172|2|anti-sense MSMS UPN46_class_I_Rep_3 1 516.8075561523438 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 95.268 1 95.268 94.768 95.768 0 0 0 0 0.38417 1 23123 23123 2.7352 1.0826 1 22130 7982 13799 13808 26372 26372 0.08699503999741864 LGWAHGFVQL 10 Unmodified _LGWAHGFVQL_ 0 0 0 REV__MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|11|1|sense REV__MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3042602539062 2 564.303458 1126.59236 0.42118 0.00023767 0.033872 1.9114E-05 0.45505 0.00025678 564.3033799249791 80.808 0.64322 84.296 84.064 84.707 3.4874 88 64 2 0 0 0 0.51565 1 20102 20102 10.074 1.3285 1 130230 + 22131 31855 13800 13809 26373 26373 0.03413155434077453 LGWAHGFVQL 10 Unmodified _LGWAHGFVQL_ 0 0 0 REV__MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|11|1|sense REV__MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.804931640625 2 564.303458 1126.59236 0.47209 0.0002664 0.29843 0.00016841 0.77053 0.00043481 564.3034037908269 81.29 0.97658 84.613 84.084 85.061 3.3231 185 110 2 0 0 0 0.46161 2 20264 20264;20296 14.838 3.198 1 222780 + 22132 31855 13800 13809 26374;26375 26374 0.03413155434077453 LGWLECFY 8 Unmodified _LGWLECFY_ 0 0 0 REV__L1MEc_dup4077|chr3:136182740-136183258:+|1.423277494110666|0.0075146546056928|7.57|151.0|25|1|anti-sense REV__L1MEc_dup4077|chr3:136182740-136183258:+|1.423277494110666|0.0075146546056928|7.57|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_2 6 515.738037109375 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 26.209 1 29.842 29.342 30.342 3.6332 0 0 0 0.40738 1 3307 3307 0.79363 0 1 + 22133 28450 13801 13810 26376 26376 -0.05056362240202361 LGWNDNEF 8 Unmodified _LGWNDNEF_ 0 0 0 REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1 REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1 MSMS UPN47_class_I_Rep_1 2 497.7163391113281 2 497.716882 993.41921 NaN NaN NaN NaN NaN NaN NaN 82.795 1 86.333 85.833 86.833 3.5386 0 0 0 0.40738 1 20693 20693 0.79363 0 1 + 22134 20774 13802 13811 26377 26377 -0.07776255413000399 LGWPLFKKK 9 Unmodified _LGWPLFKKK_ 0 0 0 L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|8|1|sense L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|8|1|sense L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 558.8507080078125 2 558.850045 1115.68554 NaN NaN NaN NaN NaN NaN NaN 88.033 1 91.42 90.92 91.92 3.3873 0 0 0 0.4007 1 22073 22073 0.52476 0 1 22135 10146 13803 13812 26378 26378 0.13232079887302461 LGWWLHAF 8 Unmodified _LGWWLHAF_ 0 0 0 L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|8|1|sense L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|8|1|sense L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 515.2705688476562 2 515.268887 1028.52322 NaN NaN NaN NaN NaN NaN NaN 112.07 1 115.64 115.14 116.14 3.572 0 0 0 0.40738 1 27653 27653 0.79363 0 1 22136 12221 13804 13813 26379 26379 0.01010116205156919 LGYFREDRS 9 Unmodified _LGYFREDRS_ 0 0 0 REV__MLT1O_dup2437|chr8:125290252-125290769:-|1.1416820198232362|0.0125245025151389|6.51|150.0|4|1|sense REV__MLT1O_dup2437|chr8:125290252-125290769:-|1.1416820198232362|0.0125245025151389|6.51|150.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.2850341796875 2 571.783087 1141.55162 -0.14656 -8.38E-05 -0.18377 -0.00010507 -0.33033 -0.00018887 571.78280229568 12.738 0.29476 16.188 16.114 16.409 3.45 59 26 3 0 0 0 0.50015 1 179 179 0.6015 0 1 130680 + 22137 31809 13805 13814 26380 26380 -0.013492306761918371 LGYHLADL 8 Unmodified _LGYHLADL_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2;ENSG00000047188.16,YTHDC2,chr5,+,I24.1,113567850,113579585|27|6.7|1|intron ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS UPN47_class_I_Rep_1 2 451.2423400878906 2 451.242535 900.470518 -0.34746 -0.00015679 -0.10058 -4.5385E-05 -0.44803 -0.00020217 451.2425061043318 39.621 0.59479 43.288 43.146 43.741 3.6668 65 44 2 0 0 0 0.82752 1 7849 7849 5.7604 0 1 61648 22138 882 13806 13815 26381 26381 0.01630113351700402 LGYLHYLF 8 Unmodified _LGYLHYLF_ 0 0 0 REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|81|1|anti-sense REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|81|1|anti-sense MSMS UPN46_class_I_Rep_3 1 513.2749633789062 2 513.276378 1024.5382 NaN NaN NaN NaN NaN NaN NaN 41.445 1 41.445 40.945 41.945 0 0 0 0 0.4032 1 8126 8126 6.3541 0 1 + 22139 24428 13807 13816 26382 26382 0.02691563282496645 LGYLKVRFR 9 Unmodified _LGYLKVRFR_ 0 0 0 REV__ENSG00000066185|ENST00000372565|ZMYND12 REV__ENSG00000066185|ENST00000372565|ZMYND12 MULTI-MSMS UPN47_class_I_Rep_1 2 576.8587646484375 2 576.356025 1150.6975 0.48773 0.00028111 2.129 0.0012271 2.6168 0.0015082 576.3571881733285 109.33 0.09256 112.93 112.86 112.95 3.6046 16 10 2 0 0 0 0.48643 1 26957 26957 2.0598 0.21551 1 1310600 + 22140 17764 13808 13817 26383 26383 0.1281769663050909 LGYLKVRFR 9 Unmodified _LGYLKVRFR_ 0 0 0 REV__ENSG00000066185|ENST00000372565|ZMYND12 REV__ENSG00000066185|ENST00000372565|ZMYND12 MULTI-MATCH UPN48_class_I_Rep_1 5 2 576.356025 1150.6975 0.40243 0.00023194 2.7727 0.001598 3.1751 0.00183 576.3576897379369 109.27 0.16058 112.9 112.85 113.01 3.6321 -0.031246 0.00030065 NaN 2.0598 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 725020 + 22141 17764 13808 13817 0.1281769663050909 LGYLKVRFR 9 Unmodified _LGYLKVRFR_ 0 0 0 REV__ENSG00000066185|ENST00000372565|ZMYND12 REV__ENSG00000066185|ENST00000372565|ZMYND12 MULTI-MATCH UPN48_class_I_Rep_3 7 2 576.356025 1150.6975 0.47772 0.00027534 2.3706 0.0013663 2.8483 0.0016416 576.3576569207843 109.26 0.072449 112.93 112.9 112.98 3.6751 0.0033057 -0.00016284 NaN 2.0598 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 889260 + 22142 17764 13808 13817 0.1281769663050909 LGYPSAVHI 9 Unmodified _LGYPSAVHI_ 0 0 0 REV__MLT1H1_dup843|chr4:15781833-15782325:-|1.190941174902331|0.0257746430993782|5.53|151.0|29|3|anti-sense REV__MLT1H1_dup843|chr4:15781833-15782325:-|1.190941174902331|0.0257746430993782|5.53|151.0|29|3|anti-sense MSMS UPN47_class_I_Rep_1 2 478.7633361816406 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 61.49 1 64.86 64.36 65.36 3.3698 0 0 0 0.35339 1 14423 14423 7.9102 0 1 + 22143 31759 13809 13818 26384 26384 0.03318088760090632 LGYQIPTSL 9 Unmodified _LGYQIPTSL_ 0 0 0 MER4D_dup390|chr5:76870971-76871520:+|2.4191035896641933|0.0047514978884898|8.99|149.0|18|3|sense MER4D_dup390|chr5:76870971-76871520:+|2.4191035896641933|0.0047514978884898|8.99|149.0|18|3|sense MER4D_dup390|chr5:76870971-76871520:+|2.4191035896641933|0.0047514978884898|8.99|149.0|18|3|sense MSMS UPN48_class_I_Rep_2 6 496.2763366699219 2 496.276575 990.538597 NaN NaN NaN NaN NaN NaN NaN 55.635 1 59.191 58.691 59.691 3.5559 0 0 0 0.32573 1 11876 11876 9.3831 0 1 22144 16027 13810 13819 26385 26385 0.04294938211717181 LGYRNVLY 8 Unmodified _LGYRNVLY_ 0 0 0 L1ME1_dup27425|chr17:30403529-30404243:+|1.0162572148704598|0.0432197902339326|4.56|151.0|30|3|sense L1ME1_dup27425|chr17:30403529-30404243:+|1.0162572148704598|0.0432197902339326|4.56|151.0|30|3|sense L1ME1_dup27425|chr17:30403529-30404243:+|1.0162572148704598|0.0432197902339326|4.56|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.27587890625 2 499.276909 996.539266 -0.23742 -0.00011854 -0.056821 -2.8369E-05 -0.29424 -0.00014691 499.27686223680183 38.901 0.7891 42.566 42.278 43.068 3.6652 71 48 2 0 0 0 0.82752 1 7646 7646 2.3027 0.24298 1 86369 22145 12354 13811 13820 26386 26386 0.040857776514030775 LGYVGFYVLL 10 Unmodified _LGYVGFYVLL_ 0 0 0 REV__ENSG00000122417.15,ODF2L,chr1,-,I13.1,86360922,86368635|79|9.48|2|intron REV__ENSG00000122417.15,ODF2L,chr1,-,I13.1,86360922,86368635|79|9.48|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 572.3253784179688 2 572.326068 1142.63758 0.44393 0.00025407 -0.066884 -3.828E-05 0.37705 0.00021579 572.3259490491158 72.026 0.39116 75.5 75.377 75.768 3.4732 78 36 3 0 0 0 0.53188 1 16941 16941 7.9102 1.187 1 294720 + 22146 18748 13812 13821 26387 26387 0.0719696117660078 LGYVRYIYN 9 Unmodified _LGYVRYIYN_ 0 0 0 L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.8079223632812 2 580.808574 1159.60259 0.40672 0.00023622 0.028781 1.6716E-05 0.4355 0.00025294 580.8084940370638 45.48 1.313 48.996 48.598 49.911 3.5162 233 92 4 0 0 0 0.40174 1 8685 8685 7.9102 0.62092 1 785200 22147 10896 13813 13822 26388 26388 0.029177183686670105 LGYVRYIYN 9 Unmodified _LGYVRYIYN_ 0 0 0 L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8108520507812 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.46434 1 8574 8574 4.3292 1.334 1 1057600 22148 10896 13813 13822 26389 26389 0.029177183686670105 LGYVRYIYN 9 Unmodified _LGYVRYIYN_ 0 0 0 L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.8077392578125 2 580.808574 1159.60259 0.40914 0.00023763 0.10627 6.1722E-05 0.51541 0.00029936 580.8085615316594 45.428 1.505 49.065 48.486 49.991 3.6369 252 103 3 0 0 0 0.40174 1 8578 8578 7.9102 0.62092 1 870350 22149 10896 13813 13822 26390 26390 0.029177183686670105 LHAAASTFTF 10 Unmodified _LHAAASTFTF_ 0 0 0 L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|303|1|anti-sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|303|1|anti-sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|303|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 533.27197265625 2 533.271824 1064.5291 0.32915 0.00017553 -0.036459 -1.9443E-05 0.2927 0.00015609 533.271649038645 49.277 0.74079 52.801 52.494 53.235 3.5243 122 52 3 0 0 0 0.41718 1 10006 10006 18.146 1.0335 1 402520 22150 15222 13814 13823 26391 26391 -0.0005883007381726202 LHAFRLGG 8 Unmodified _LHAFRLGG_ 0 0 0 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 MULTI-MSMS UPN47_class_I_Rep_1 2 435.7515563964844 2 435.750862 869.487171 0.032884 1.4329E-05 1.7172 0.00074825 1.75 0.00076258 435.75152889681317 75.153 0.044456 78.547 78.528 78.572 3.3937 5 3 2 0 0 0 0.82752 1 18540 18540 0.79363 0 1 127260 + 22151 18159 13815 13824 26392 26392 0.04720659028339469 LHAFRLGG 8 Unmodified _LHAFRLGG_ 0 0 0 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 MSMS UPN47_class_I_Rep_1 2 435.7513122558594 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 74.964 1 78.358 77.858 78.858 3.3937 0 0 0 0.40738 1 18477 18477 0.79363 0 1 + 22152 18159 13815 13824 26393 26393 0.04720659028339469 LHAFRLGG 8 Unmodified _LHAFRLGG_ 0 0 0 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.750862 869.487171 -0.34361 -0.00014973 2.1875 0.00095321 1.8439 0.00080348 435.75168989616265 75.32 0.10038 78.633 78.584 78.685 3.3127 -0.033913 0.00020845 NaN 0.79363 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 89446 + 22153 18159 13815 13824 0.04720659028339469 LHAFRLGG 8 Unmodified _LHAFRLGG_ 0 0 0 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.750862 869.487171 -0.38294 -0.00016687 2.8511 0.0012424 2.4682 0.0010755 435.7518135558055 75.482 0.057152 78.729 78.708 78.765 3.2464 0.061829 0.00078676 NaN 0.79363 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 115650 + 22154 18159 13815 13824 0.04720659028339469 LHAFRLGG 8 Unmodified _LHAFRLGG_ 0 0 0 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 REV__nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.750862 869.487171 0.18559 8.0871E-05 1.7857 0.00077813 1.9713 0.000859 435.7515977901055 75.192 0.034378 78.758 78.745 78.779 3.5659 0.091647 -0.00014171 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 311130 + 22155 18159 13815 13824 0.04720659028339469 LHAKGARG 8 Unmodified _LHAKGARG_ 0 0 0 REV__ENST00000542933.5_1_12:122233718-122234021:-|nuORF REV__ENST00000542933.5_1_12:122233718-122234021:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 405.2409362792969 2 405.240661 808.46677 -0.01125 -4.5588E-06 0.11619 4.7086E-05 0.10494 4.2527E-05 405.240640593058 76.664 1.1967 80.079 79.526 80.723 3.4149 196 106 2 0 0 0 0.82752 2 18858 18858;19040 0.79363 0 1 724950 + 22156 22923 13816 13825 26394;26395 26394 0.054874883685215536 LHANFHPQ 8 Unmodified _LHANFHPQ_ 0 0 0 REV__L1MC5_dup11186|chr13:21106045-21107202:+|1.5227161364048325|0.0018731963451544|9.67|133.0|61|2|anti-sense REV__L1MC5_dup11186|chr13:21106045-21107202:+|1.5227161364048325|0.0018731963451544|9.67|133.0|61|2|anti-sense MSMS UPN48_class_I_Rep_1 5 482.2441101074219 2 482.243401 962.472249 NaN NaN NaN NaN NaN NaN NaN 118.02 1 121.64 121.14 122.14 3.6215 0 0 0 0.40738 1 28774 28774 0.79363 0 1 + 22157 27054 13817 13826 26396 26396 -0.010488328396718316 LHAQVLNL 8 Unmodified _LHAQVLNL_ 0 0 0 REV__MLT1O_dup2328|chr8:60561330-60561785:-|1.375498366667544|0.0236800199124774|5.86|150.0|24|1|anti-sense REV__MLT1O_dup2328|chr8:60561330-60561785:-|1.375498366667544|0.0236800199124774|5.86|150.0|24|1|anti-sense MSMS UPN48_class_I_Rep_3 7 454.2798767089844 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 39.612 1 43.268 42.768 43.768 3.6557 0 0 0 0.40738 1 6949 6949 0.79363 0 1 + 22158 31808 13818 13827 26397 26397 0.07169794996980272 LHARPTGSVL 10 Unmodified _LHARPTGSVL_ 0 0 0 REV__L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|164|3|anti-sense REV__L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|164|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.80615234375 2 525.806365 1049.59818 -0.092781 -4.8785E-05 -0.24347 -0.00012802 -0.33625 -0.0001768 525.8061178627254 38.923 1.1281 42.588 42.178 43.306 3.6652 164 77 3 0 0 0 0.55148 1 7702 7702 5.2969 0.96765 1 264610 + 22159 24173 13819 13828 26398 26398 0.07536253945772842 LHASRKPR 8 Unmodified _LHASRKPR_ 0 0 0 REV__AluJb_dup76535|chr11:16740420-16740721:-|1.571324202906515|0.2210801470839371|2.83|151.0|19|3|anti-sense REV__AluJb_dup76535|chr11:16740420-16740721:-|1.571324202906515|0.2210801470839371|2.83|151.0|19|3|anti-sense MSMS UPN46_class_I_Rep_3 1 482.7952880859375 2 482.793592 963.572632 NaN NaN NaN NaN NaN NaN NaN 22.482 1 22.482 21.982 22.982 0 0 0 0 0.40738 1 2676 2676 0.79363 0 1 + 22160 16961 13820 13829 26399 26399 0.08938824213987573 LHCDRCLPLY 10 Unmodified _LHCDRCLPLY_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS UPN47_class_I_Rep_1 2 617.3007202148438 2 616.799368 1231.58418 0.0084866 5.2345E-06 -0.78743 -0.00048568 -0.77894 -0.00048045 616.7988667074247 38.517 0.67849 42.183 41.905 42.584 3.6652 103 45 3 0 0 0 0.47413 1 7437 7437 13.906 1.3745 1 254890 22161 874 13821 13830 26400 26400 -0.02234482869198473 LHCDRCLPLY 10 Unmodified _LHCDRCLPLY_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS UPN47_class_I_Rep_3 4 616.8004760742188 2 616.799368 1231.58418 -0.043849 -2.7046E-05 -0.7772 -0.00047938 -0.82105 -0.00050642 616.7987926391742 38.994 0.83587 42.232 41.855 42.69 3.238 125 59 3 0 0 0 0.54822 1 7579 7579 5.7319 0.43497 1 166750 22162 874 13821 13830 26401 26401 -0.02234482869198473 LHCLHLFMR 9 Unmodified _LHCLHLFMR_ 0 0 0 REV__L1PA15_dup6745|chr13:28157020-28158595:+|9.618955366904457|0.0543797249224486|7.47|151.0|83|2|anti-sense REV__L1PA15_dup6745|chr13:28157020-28158595:+|9.618955366904457|0.0543797249224486|7.47|151.0|83|2|anti-sense MSMS UPN47_class_I_Rep_1 2 585.3064575195312 2 585.307164 1168.59977 NaN NaN NaN NaN NaN NaN NaN 30.647 1 34.392 33.892 34.892 3.7449 0 0 0 0.39518 1 5037 5037 1.8442 0 1 + 22163 29271 13822 13831 26402 26402 0.022218484385120973 LHCLMSEAMHA 11 Unmodified _LHCLMSEAMHA_ 0 0 0 REV__ENST00000528055.1_1_11:83501400-83501673:-|nuORF REV__ENST00000528055.1_1_11:83501400-83501673:-|nuORF MSMS UPN47_class_I_Rep_2 3 621.7725219726562 2 621.775036 1241.53552 NaN NaN NaN NaN NaN NaN NaN 71.561 1 74.851 74.351 75.351 3.2899 0 0 0 0.38417 1 17497 17497 1.3295 0 1 + 22164 22826 13823 13832 26403 26403 -0.07558719500616462 LHCSGIALFGW 11 Unmodified _LHCSGIALFGW_ 0 0 0 REV__L1PA13_dup3133|chr6:11347293-11349938:+|1.098016821310258|0.179690356710383|2.61|151.0|139|2|anti-sense REV__L1PA13_dup3133|chr6:11347293-11349938:+|1.098016821310258|0.179690356710383|2.61|151.0|139|2|anti-sense MSMS UPN47_class_I_Rep_2 3 602.3040771484375 2 602.302601 1202.59065 NaN NaN NaN NaN NaN NaN NaN 66.288 1 69.547 69.047 70.047 3.2588 0 0 0 0.34415 1 15916 15916 9.3831 1.2276 1 + 22165 29093 13824 13833 26404 26404 -0.002542216461733915 LHDKSSHK 8 Unmodified _LHDKSSHK_ 0 0 0 REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|45|2|sense REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|45|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.25390625 2 476.253966 950.493378 0.2564 0.00012211 -0.33481 -0.00015945 -0.078409 -3.7342E-05 476.25369723204494 98.493 0.057709 98.493 98.469 98.526 0 6 5 2 0 0 0 0.82752 1 23983 23983 3.5965 0 1 67237 + 22166 27087 13825 13834 26405 26405 0.01615132469191849 LHDKSSHK 8 Unmodified _LHDKSSHK_ 0 0 0 REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|45|2|sense REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|45|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 476.253966 950.493378 0.2564 0.00012211 -0.33481 -0.00015945 -0.078409 -3.7342E-05 476.25369723204494 98.493 0.057709 98.493 98.469 98.526 0 0.054174 -0.0003972 NaN 3.5965 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 67237 + 22167 27087 13825 13834 0.01615132469191849 LHDKSSHK 8 Unmodified _LHDKSSHK_ 0 0 0 REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|45|2|sense REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|45|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 476.253966 950.493378 0.32181 0.00015326 0.18248 8.6905E-05 0.50429 0.00024017 476.2539938431871 95.019 0.25647 98.494 98.302 98.558 3.4753 0.055611 9.5514E-05 NaN 3.5965 48 34 2 NaN NaN NaN NaN 0 NaN NaN 0 96140 + 22168 27087 13825 13834 0.01615132469191849 LHDKTYTF 8 Unmodified _LHDKTYTF_ 0 0 0 L1MB7_dup7748|chr6:82208759-82209731:+|1.0572891958539037|0.1571581848673831|2.75|150.0|46|2|anti-sense L1MB7_dup7748|chr6:82208759-82209731:+|1.0572891958539037|0.1571581848673831|2.75|150.0|46|2|anti-sense L1MB7_dup7748|chr6:82208759-82209731:+|1.0572891958539037|0.1571581848673831|2.75|150.0|46|2|anti-sense MSMS UPN48_class_I_Rep_2 6 512.75927734375 2 512.758549 1023.50255 NaN NaN NaN NaN NaN NaN NaN 28.479 1 32.11 31.61 32.61 3.6311 0 0 0 0.40659 1 3923 3923 1.8442 0 1 22169 10876 13826 13835 26406 26406 -0.008265189651410765 LHEEIPSHVF 10 Unmodified _LHEEIPSHVF_ 0 0 0 REV__L1MC2_dup1514|chr4:89802895-89803580:-|1.9994344048921184|0.2304528554769941|3.12|149.0|53|3|anti-sense REV__L1MC2_dup1514|chr4:89802895-89803580:-|1.9994344048921184|0.2304528554769941|3.12|149.0|53|3|anti-sense MSMS UPN48_class_I_Rep_2 6 604.3113403320312 2 604.308938 1206.60332 NaN NaN NaN NaN NaN NaN NaN 69.203 1 72.725 72.225 73.225 3.5216 0 0 0 0.53105 1 16016 16016 6.2058 0.97511 1 + 22170 26636 13827 13836 26407 26407 0.00828513017700061 LHEEIPSHVF 10 Unmodified _LHEEIPSHVF_ 0 0 0 REV__L1MC2_dup1514|chr4:89802895-89803580:-|1.9994344048921184|0.2304528554769941|3.12|149.0|53|3|anti-sense REV__L1MC2_dup1514|chr4:89802895-89803580:-|1.9994344048921184|0.2304528554769941|3.12|149.0|53|3|anti-sense MSMS UPN48_class_I_Rep_3 7 604.3115844726562 2 604.308938 1206.60332 NaN NaN NaN NaN NaN NaN NaN 69.51 1 73.023 72.523 73.523 3.5128 0 0 0 0.53105 1 16018 16018 6.2058 0.97511 1 + 22171 26636 13827 13836 26408 26408 0.00828513017700061 LHELGLGNDF 10 Unmodified _LHELGLGNDF_ 0 0 0 L1M4_dup18205|chr17:46140290-46140994:+|1.479958173844936|0.0492333894795376|4.91|151.0|3|1|sense L1M4_dup18205|chr17:46140290-46140994:+|1.479958173844936|0.0492333894795376|4.91|151.0|3|1|sense L1M4_dup18205|chr17:46140290-46140994:+|1.479958173844936|0.0492333894795376|4.91|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.7807006835938 2 557.780013 1113.54547 0.4313 0.00024057 -0.44709 -0.00024938 -0.015783 -8.8032E-06 557.7799172716495 49.831 1.9242 53.174 52.684 54.608 3.3431 262 106 4 0 0 0 0.56354 1 11271 11271 1.3295 1.3295 1 1381000 22172 8873 13828 13837 26409 26409 -0.006757489077244827 LHERIVKLV 9 Unmodified _LHERIVKLV_ 0 0 0 REV__L1ME3Cz_dup3039|chr4:39710793-39711155:-|1.1700474700794836|0.0099096198632806|6.88|151.0|18|1|anti-sense REV__L1ME3Cz_dup3039|chr4:39710793-39711155:-|1.1700474700794836|0.0099096198632806|6.88|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 554.239990234375 2 553.855858 1105.69716 NaN NaN NaN NaN NaN NaN NaN 111.39 1 114.92 114.42 115.42 3.5226 0 0 0 0.40098 1 27109 27109 0.45834 0 1 + 22173 28115 13829 13838 26410 26410 0.14854276910659792 LHEVGSGVL 9 Unmodified _LHEVGSGVL_ 0 0 0 REV__L1MD2_dup1075|chr2:111228613-111231526:+|1.9627453657422895|0.1226304851126796|4.0|149.0|113|1|anti-sense REV__L1MD2_dup1075|chr2:111228613-111231526:+|1.9627453657422895|0.1226304851126796|4.0|149.0|113|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 456.3016052246094 2 455.753267 909.491981 0.10246 4.6695E-05 0.45968 0.0002095 0.56214 0.0002562 455.75311908064003 49.284 0.48355 53.001 52.76 53.243 3.7175 37 33 2 0 0 0 0.12034 1 9912 9912 7.2892 7.2892 1 81732 + 22174 27388 13830 13839 26411 26411 0.03361498380445482 LHEYFHCH 8 Unmodified _LHEYFHCH_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MSMS UPN47_class_I_Rep_3 4 543.235107421875 2 543.234719 1084.45488 NaN NaN NaN NaN NaN NaN NaN 21.806 1 25.156 24.656 25.656 3.3496 0 0 0 0.40604 1 2502 2502 2.5775 0.27475 1 + 22175 20583 13831 13840 26412 26412 -0.08396496436967027 LHFCLPLD 8 Unmodified _LHFCLPLD_ 0 0 0 REV__L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|105|3|anti-sense REV__L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|105|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.2609558105469 2 479.246763 956.478974 NaN NaN NaN NaN NaN NaN NaN 39.098 1 42.763 42.263 43.263 3.6652 0 0 0 0.40404 1 7609 7609 5.2307 0 1 + 22176 26073 13832 13841 26413 26413 -0.0010065600331472524 LHFCLPLD 8 Unmodified _LHFCLPLD_ 0 0 0 REV__L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|105|3|anti-sense REV__L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|105|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.2480163574219 2 479.246763 956.478974 NaN NaN NaN NaN NaN NaN NaN 39.137 1 42.802 42.302 43.302 3.6652 0 0 0 0.39624 1 7621 7621 9.3474 0 1 + 22177 26073 13832 13841 26414 26414 -0.0010065600331472524 LHFFYRQI 8 Unmodified _LHFFYRQI_ 0 0 0 REV__MER11C_dup421|chr7:152351585-152352653:+|1.179077119307604|0.0136873614269065|6.43|151.0|44|1|anti-sense REV__MER11C_dup421|chr7:152351585-152352653:+|1.179077119307604|0.0136873614269065|6.43|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_1 2 562.30712890625 2 562.306001 1122.59745 NaN NaN NaN NaN NaN NaN NaN 111.84 1 115.42 114.92 115.92 3.572 0 0 0 0.40738 1 27591 27591 0.79363 0 1 + 22178 31101 13833 13842 26415 26415 0.041054592966929704 LHFHHQLR 8 Unmodified _LHFHHQLR_ 0 0 0 L1ME4b_dup2390|chr2:109817724-109818279:-|1.679062216276646|0.3922785852785935|2.1|146.0|41|3|anti-sense L1ME4b_dup2390|chr2:109817724-109818279:-|1.679062216276646|0.3922785852785935|2.1|146.0|41|3|anti-sense L1ME4b_dup2390|chr2:109817724-109818279:-|1.679062216276646|0.3922785852785935|2.1|146.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 544.2999267578125 2 544.299042 1086.58353 NaN NaN NaN NaN NaN NaN NaN 28.734 1 32.233 31.733 32.733 3.4986 0 0 0 0.40604 1 4501 4501 2.5775 0 1 22179 12918 13834 13843 26416 26416 0.043702265882757274 LHFHLRYQ 8 Unmodified _LHFHLRYQ_ 0 0 0 L1PA3_dup225|chr1:84228931-84234940:-|3.222435310730038|0.4644621555680597|2.79|151.0|109|3|sense;L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|55|2|sense;L1PA3_dup10431|chr20:25329950-25335970:+|1.101500721299389|0.074946822761913|3.88|150.0|3|1|sense;L1PA3_dup9441|chr14:81114166-81120190:+|1.2016156260747857|0.4862989605285416|1.31|151.0|3|1|sense;L1PA3_dup3758|chr5:126903811-126909817:-|2.2961703146061354|0.3300810679247131|2.8|151.0|2|1|sense;L1PA2_dup4440|chr15:85433964-85439965:+|1.0286431950190111|0.1581883264422988|2.7|151.0|53|2|sense;L1PA3_dup1071|chr2:95869530-95875690:+|1.002403934855319|0.1831451396294182|2.45|151.0|42|2|sense;L1PA3_dup1078|chr2:97225628-97231779:-|4.695165431055631|0.4650504581609178|3.34|151.0|73|2|sense;L1PA3_dup9636|chr15:61896238-61902274:+|2.335879981002092|0.0989047608543693|4.56|150.0|3|1|sense;L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|2|1|sense;L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|3|1|sense;L1PA3_dup1687|chr3:33671455-33677714:+|2.6229792291023344|0.3076045160087201|3.09|151.0|2|1|sense;L1PA3_dup3723|chr5:119294045-119300263:-|5.738578586122925|0.0558010729143642|6.68|151.0|65|2|sense;L1PA3_dup7641|chr10:75558531-75564686:-|5.333025329153107|0.080861835760692|6.04|151.0|3|1|sense;L1PA3_dup5516|chr8:98738606-98744745:+|1.0788336294175884|0.061328883418926|4.14|151.0|2|1|sense;L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|45|2|sense;L1PA3_dup825|chr2:15439501-15445667:+|1.3258350730775432|0.0866026024755428|3.94|151.0|2|1|sense L1PA3_dup225|chr1:84228931-84234940:-|3.222435310730038|0.4644621555680597|2.79|151.0|109|3|sense L1PA3_dup225|chr1:84228931-84234940:-|3.222435310730038|0.4644621555680597|2.79|151.0|109|3|sense MSMS UPN46_class_I_Rep_3 1 557.3013305664062 2 557.30125 1112.58795 NaN NaN NaN NaN NaN NaN NaN 84.991 1 84.991 84.491 85.491 0 0 0 0 0.40738 1 20252 20252 0.79363 0 1 22180 14240 13835 13844 26417 26417 0.03615691011191302 LHFHQQFM 8 Unmodified _LHFHQQFM_ 0 0 0 L1MB4_dup624|chr2:20259292-20260256:-|2.053686455050721|0.3513952526040576|2.55|151.0|67|3|anti-sense L1MB4_dup624|chr2:20259292-20260256:-|2.053686455050721|0.3513952526040576|2.55|151.0|67|3|anti-sense L1MB4_dup624|chr2:20259292-20260256:-|2.053686455050721|0.3513952526040576|2.55|151.0|67|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.2611083984375 2 544.260736 1086.50692 NaN NaN NaN NaN NaN NaN NaN 113.08 1 113.08 112.58 113.58 0 0 0 0 0.40738 1 27926 27926 0.79363 0 1 22181 10544 13836 13845 26418 26418 -0.03287333023217798 LHFHVRLM 8 Unmodified _LHFHVRLM_ 0 0 0 REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|166|2|anti-sense REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|166|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7969360351562 2 526.794746 1051.57494 NaN NaN NaN NaN NaN NaN NaN 17.182 1 20.746 20.246 21.246 3.5637 0 0 0 0.40738 1 941 941 0.79363 0 1 + 22182 25147 13837 13846 26419 26419 0.05121536627439127 LHFHVRLM 8 Unmodified _LHFHVRLM_ 0 0 0 REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|166|2|anti-sense REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|166|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7959594726562 2 526.794746 1051.57494 NaN NaN NaN NaN NaN NaN NaN 17.587 1 21.15 20.65 21.65 3.5637 0 0 0 0.40738 1 1025 1025 0.79363 0 1 + 22183 25147 13837 13846 26420 26420 0.05121536627439127 LHFIAPRGS 9 Unmodified _LHFIAPRGS_ 0 0 0 L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|1|1|sense L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|1|1|sense L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 499.2815246582031 2 499.282526 996.550499 NaN NaN NaN NaN NaN NaN NaN 47.07 1 50.765 50.265 51.265 3.6951 0 0 0 0.39428 1 10044 10044 2.0598 0.86641 1 22184 14150 13838 13847 26421 26421 0.052085997455719735 LHFIRTPV 8 Unmodified _LHFIRTPV_ 0 0 0 MLT1C_dup15799|chr15:64639304-64639752:-|1.7583301186385725|0.0119981822804766|7.2|151.0|24|3|anti-sense MLT1C_dup15799|chr15:64639304-64639752:-|1.7583301186385725|0.0119981822804766|7.2|151.0|24|3|anti-sense MLT1C_dup15799|chr15:64639304-64639752:-|1.7583301186385725|0.0119981822804766|7.2|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7956848144531 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.882 1 67.356 66.856 67.856 3.4743 0 0 0 0.40472 1 14397 14397 4.3292 0 1 22185 16302 13839 13848 26422 26422 0.08446074268010761 LHFKLYLV 8 Unmodified _LHFKLYLV_ 0 0 0 REV__ENST00000474651.1_1_3:90271203-90283551:-|nuORF REV__ENST00000474651.1_1_3:90271203-90283551:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.8140869140625 2 516.81567 1031.61679 NaN NaN NaN NaN NaN NaN NaN 28.961 1 32.453 31.953 32.953 3.4923 0 0 0 0.40738 1 4570 4570 0.79363 0 1 + 22186 22526 13840 13849 26423 26423 0.10224415587595104 LHFLIALTP 9 Unmodified _LHFLIALTP_ 0 0 0 REV__L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|101|3|sense REV__L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|101|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 512.313720703125 2 512.813128 1023.6117 0.19408 9.9528E-05 2.8918 0.0014829 3.0859 0.0015825 513.3163284004399 54.222 0.13028 57.723 57.622 57.752 3.5014 7 5 2 0 0 0 0.12422 1 12201 12201 2.3027 0 1 58865 + 22187 26581 13841 13850 26424 26424 0.10084111724984268 LHFPILKQ 8 Unmodified _LHFPILKQ_ 0 0 0 L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense MSMS UPN48_class_I_Rep_3 7 498.3069763183594 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 44.894 1 48.531 48.031 49.031 3.6372 0 0 0 0.40604 1 8534 8534 2.5775 0 1 22188 8617 13842 13851 26425 26425 0.09887244927813299 LHFPLPRF 8 Unmodified _LHFPLPRF_ 0 0 0 HAL1_dup4114|chr3:11815043-11815973:+|2.258328414433741|0.2752041726959389|3.04|151.0|54|2|anti-sense HAL1_dup4114|chr3:11815043-11815973:+|2.258328414433741|0.2752041726959389|3.04|151.0|54|2|anti-sense HAL1_dup4114|chr3:11815043-11815973:+|2.258328414433741|0.2752041726959389|3.04|151.0|54|2|anti-sense MSMS UPN48_class_I_Rep_2 6 513.7984619140625 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 86.85 1 90.567 90.067 91.067 3.7171 0 0 0 0.40746 1 20667 20667 0.69038 0 1 22189 7889 13843 13852 26426 26426 0.0693037813061892 LHFRHTDNV 9 Unmodified _LHFRHTDNV_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1 MSMS UPN48_class_I_Rep_3 7 569.7918090820312 2 569.791247 1137.56794 NaN NaN NaN NaN NaN NaN NaN 36.127 1 39.793 39.293 40.293 3.6667 0 0 0 0.39428 1 5941 5941 2.0598 0 1 22190 3184;8463 13844 13853 26427 26427 0.004658952805812078 LHFSILSS 8 Unmodified _LHFSILSS_ 0 0 0 REV__L1ME3B_dup7574|chr18:79266116-79269624:-|1.0946046934659066|0.0819312448735967|3.74|150.0|238|3|anti-sense REV__L1ME3B_dup7574|chr18:79266116-79269624:-|1.0946046934659066|0.0819312448735967|3.74|150.0|238|3|anti-sense MSMS UPN47_class_I_Rep_3 4 452.2513122558594 2 452.25036 902.486168 NaN NaN NaN NaN NaN NaN NaN 26.371 1 29.719 29.219 30.219 3.3478 0 0 0 0.40625 1 3847 3847 2.3027 0 1 + 22191 28085 13845 13854 26428 26428 0.03102399868782868 LHFTLIPR 8 Unmodified _LHFTLIPR_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|44|2|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|44|2|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_1 2 498.8040771484375 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.422 1 53.081 52.581 53.581 3.6592 0 0 0 0.40604 1 10748 10748 2.5775 0 1 22192 7809 13846 13855 26429 26429 0.09366360785043071 LHFVASVFRG 10 Unmodified _LHFVASVFRG_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MSMS UPN47_class_I_Rep_1 2 566.8160400390625 2 566.816733 1131.61891 -0.12623 -7.1552E-05 -0.90914 -0.00051531 -1.0354 -0.00058687 566.8161355344118 15.13 0.29781 18.627 18.511 18.809 3.4968 56 35 2 0 0 0 0.56078 1 744 744 3.2813 3.2813 1 51682 22193 5444 13847 13856 26430 26430 0.05836844325403945 LHFVASVFRG 10 Unmodified _LHFVASVFRG_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 566.816733 1131.61891 0.048274 2.7362E-05 -1.3387 -0.0007588 -1.2904 -0.00073144 566.8159270925668 15.253 0.27154 18.64 18.543 18.814 3.3864 -0.013499 -0.00037858 NaN 3.2813 43 31 2 NaN NaN NaN NaN 0 NaN NaN 0 34218 22194 5444 13847 13856 0.05836844325403945 LHFVASVFRG 10 Unmodified _LHFVASVFRG_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 566.816733 1131.61891 -0.40732 -0.00023087 -0.98149 -0.00055632 -1.3888 -0.0007872 566.816229786587 15.327 0.31669 18.693 18.586 18.903 3.3659 0.039667 2.6371E-05 NaN 3.2813 51 32 2 NaN NaN NaN NaN 0 NaN NaN 0 21367 22195 5444 13847 13856 0.05836844325403945 LHFVQVEV 8 Unmodified _LHFVQVEV_ 0 0 0 REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|23|2|anti-sense REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.7716979980469 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 21.146 1 24.79 24.29 25.29 3.6436 0 0 0 0.40738 1 2248 2248 0.79363 0 1 + 22196 27443 13848 13857 26431 26431 0.042383752771456784 LHFVSSFF 8 Unmodified _LHFVSSFF_ 0 0 0 MER5C_dup894|chr10:103146874-103147158:+|1.5225386718044214|0.0526388494452049|4.85|151.0|6|2|sense MER5C_dup894|chr10:103146874-103147158:+|1.5225386718044214|0.0526388494452049|4.85|151.0|6|2|sense MER5C_dup894|chr10:103146874-103147158:+|1.5225386718044214|0.0526388494452049|4.85|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 492.2530212402344 2 492.252903 982.491253 NaN NaN NaN NaN NaN NaN NaN 27.061 1 30.827 30.327 31.327 3.7662 0 0 0 0.40738 1 3969 3969 0.79363 0 1 22197 16149 13849 13858 26432 26432 -0.0006929626861165161 LHFVSSFF 8 Unmodified _LHFVSSFF_ 0 0 0 MER5C_dup894|chr10:103146874-103147158:+|1.5225386718044214|0.0526388494452049|4.85|151.0|6|2|sense MER5C_dup894|chr10:103146874-103147158:+|1.5225386718044214|0.0526388494452049|4.85|151.0|6|2|sense MER5C_dup894|chr10:103146874-103147158:+|1.5225386718044214|0.0526388494452049|4.85|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 492.2534484863281 2 492.252903 982.491253 NaN NaN NaN NaN NaN NaN NaN 27.273 1 30.772 30.272 31.272 3.4986 0 0 0 0.40738 1 4069 4069 0.79363 0 1 22198 16149 13849 13858 26433 26433 -0.0006929626861165161 LHGFGMLV 8 Unmodified _LHGFGMLV_ 0 0 0 REV__MER41A_dup585|chr4:87368541-87369097:+|1.143320507792541|0.0252878997492793|5.5|151.0|31|2|anti-sense REV__MER41A_dup585|chr4:87368541-87369097:+|1.143320507792541|0.0252878997492793|5.5|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2156066894531 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 84.241 1 87.839 87.339 88.339 3.5973 0 0 0 0.40738 1 20166 20166 0.79363 0 1 + 22199 31305 13850 13859 26434 26434 0.016513786878363135 LHGFMLII 8 Unmodified _LHGFMLII_ 0 0 0 REV__L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|271|2|anti-sense REV__L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|271|2|anti-sense MSMS UPN48_class_I_Rep_1 5 472.27520751953125 2 472.275324 942.536095 NaN NaN NaN NaN NaN NaN NaN 64.744 1 68.198 67.698 68.698 3.4541 0 0 0 0.40581 1 14681 14681 2.8892 0 1 + 22200 30645 13851 13860 26435 26435 0.06252811273066072 LHGGAPTLTY 10 Unmodified _LHGGAPTLTY_ 0 0 0 REV__ENSG00000188620|ENST00000357878|HMX3 REV__ENSG00000188620|ENST00000357878|HMX3 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2723388671875 2 515.271824 1028.5291 0.24539 0.00012644 -0.025821 -1.3305E-05 0.21957 0.00011314 515.27177830905 48.848 1.0208 52.477 52.042 53.063 3.6291 186 77 4 0 0 0 0.52083 1 9920 9920 9.3831 0.63772 1 1050900 + 22201 20975 13852 13861 26436 26436 0.01597169926208153 LHGGPVQTGR 10 Unmodified _LHGGPVQTGR_ 0 0 0 REV__ENST00000328914.4_1_7:4803646-4803730:+|nuORF REV__ENST00000328914.4_1_7:4803646-4803730:+|nuORF MSMS UPN48_class_I_Rep_1 5 511.2692565917969 2 511.280515 1020.54648 NaN NaN NaN NaN NaN NaN NaN 45.301 1 48.817 48.317 49.317 3.5162 0 0 0 0.53105 1 8722 8722 23.79 3.3362 1 + 22202 21771 13853 13862 26437 26437 0.03702510251866897 LHGHGVLP 8 Unmodified _LHGHGVLP_ 0 0 0 ENST00000314256.11_1_17:73490738-73490822:+|nuORF ENST00000314256.11_1_17:73490738-73490822:+|nuORF ENST00000314256.11_1_17:73490738-73490822:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 415.89544677734375 2 415.237587 828.460622 -0.13864 -5.7567E-05 -4.4486 -0.0018472 -4.5873 -0.0019048 415.23445038979855 96.806 0.05246 100.42 100.38 100.44 3.6088 6 4 2 0 0 0 0.72333 1 23345 23345 0.79363 0 1 43418 22203 6123 13854 13863 26438 26438 0.03952970136992917 LHGHGVLP 8 Unmodified _LHGHGVLP_ 0 0 0 ENST00000314256.11_1_17:73490738-73490822:+|nuORF ENST00000314256.11_1_17:73490738-73490822:+|nuORF ENST00000314256.11_1_17:73490738-73490822:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 415.237587 828.460622 0.082154 3.4114E-05 -2.9023 -0.0012051 -2.8201 -0.001171 415.2346909190648 96.457 0.11351 100.24 100.22 100.33 3.7804 -0.095438 0.0014096 NaN 0.79363 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 104940 22204 6123 13854 13863 0.03952970136992917 LHGHGVLP 8 Unmodified _LHGHGVLP_ 0 0 0 ENST00000314256.11_1_17:73490738-73490822:+|nuORF ENST00000314256.11_1_17:73490738-73490822:+|nuORF ENST00000314256.11_1_17:73490738-73490822:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 415.237587 828.460622 0.09756 4.051E-05 -5.5041 -0.0022855 -5.4065 -0.002245 415.2351554110323 96.438 0.064163 100.35 100.3 100.37 3.9084 0.013231 -0.00075116 NaN 0.79363 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 127790 22205 6123 13854 13863 0.03952970136992917 LHGRNSII 8 Unmodified _LHGRNSII_ 0 0 0 REV__L1MD3_dup1111|chr3:177173215-177173888:+|3.436332680473078|0.0148643824156997|7.85|151.0|28|1|anti-sense REV__L1MD3_dup1111|chr3:177173215-177173888:+|3.436332680473078|0.0148643824156997|7.85|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_3 4 455.2476806640625 2 455.266876 908.519199 NaN NaN NaN NaN NaN NaN NaN 28.959 1 32.283 31.783 32.783 3.3235 0 0 0 0.40659 1 4614 4614 1.8442 1.0506 1 + 22206 27466 13855 13864 26439 26439 0.06128026711462553 LHGVFMFCH 9 Unmodified _LHGVFMFCH_ 0 0 0 REV__L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|202|2|anti-sense REV__L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|202|2|anti-sense MSMS UPN47_class_I_Rep_2 3 545.75146484375 2 545.75169 1089.48883 NaN NaN NaN NaN NaN NaN NaN 117.7 1 121.19 120.69 121.69 3.4891 0 0 0 0.39326 1 28779 28779 2.3027 1.5091 1 + 22207 30358 13856 13865 26440 26440 -0.052337912695747946 LHHAFWLCLQ 10 Unmodified _LHHAFWLCLQ_ 0 0 0 ENST00000341552.9_2_2:219894730-219894868:-|nuORF ENST00000341552.9_2_2:219894730-219894868:-|nuORF ENST00000341552.9_2_2:219894730-219894868:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 634.827392578125 2 634.323868 1266.63318 0.54106 0.00034321 1.75 0.0011101 2.2911 0.0014533 634.3249753393806 52.643 0.57935 56.282 56.038 56.618 3.639 48 37 2 0 0 0 0.55983 1 10916 10916 3.9444 0 1 107680 22208 6234 13857 13866 26441 26441 0.010531734820688143 LHHCVCTF 8 Unmodified _LHHCVCTF_ 0 0 0 L1MC3_dup2414|chr3:129887675-129888670:+|1.1945189685735262|0.0341790226516087|5.13|151.0|42|1|anti-sense L1MC3_dup2414|chr3:129887675-129888670:+|1.1945189685735262|0.0341790226516087|5.13|151.0|42|1|anti-sense L1MC3_dup2414|chr3:129887675-129888670:+|1.1945189685735262|0.0341790226516087|5.13|151.0|42|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 480.2146911621094 2 480.21494 958.415328 0.11579 5.5606E-05 -0.32068 -0.000154 -0.20489 -9.8392E-05 480.2148332571154 27.587 1.3927 31.342 30.91 32.302 3.7555 294 161 3 0 0 0 0.82752 1 3701 3701 14.582 14.582 1 330290 22209 11320 13858 13867 26442 26442 -0.06554339712067758 LHHEYFLLK 9 Unmodified _LHHEYFLLK_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN48_class_I_Rep_1 5 600.3330078125 2 600.332216 1198.64988 NaN NaN NaN NaN NaN NaN NaN 65.975 1 69.427 68.927 69.927 3.4516 0 0 0 0.39518 1 15051 15051 1.8442 0.36234 1 22210 3340 13859 13868 26443 26443 0.05849997639666071 LHHFHALF 8 Unmodified _LHHFHALF_ 0 0 0 REV__HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|34|1|anti-sense REV__HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 511.2677307128906 2 511.271961 1020.52937 NaN NaN NaN NaN NaN NaN NaN 49.578 1 53.237 52.737 53.737 3.6592 0 0 0 0.39167 1 10796 10796 11.114 0 1 + 22211 23462 13860 13869 26444 26444 0.01992634436703611 LHHHQHYL 8 Unmodified _LHHHQHYL_ 0 0 0 REV__HUERS-P3-int_dup571|chr18:21078509-21080065:-|1.450132111178563|0.015077680644643|6.59|151.0|22|2|sense REV__HUERS-P3-int_dup571|chr18:21078509-21080065:-|1.450132111178563|0.015077680644643|6.59|151.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 543.2194213867188 2 542.7754 1083.53625 NaN NaN NaN NaN NaN NaN NaN 111.25 1 111.25 110.75 111.75 0 0 0 0 0.40738 1 27422 27422 0.79363 0 1 + 22212 23977 13861 13870 26445 26445 -0.0021805268272601097 LHHINRKK 8 Unmodified _LHHINRKK_ 0 0 0 L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|2|1|sense L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|2|1|sense L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 523.3035888671875 2 523.322517 1044.63048 NaN NaN NaN NaN NaN NaN NaN 78.664 1 82.285 81.785 82.785 3.6216 0 0 0 0.40604 1 18626 18626 2.5775 0 1 22213 10813 13862 13871 26446 26446 0.1099508613940543 LHHIPIWT 8 Unmodified _LHHIPIWT_ 0 0 0 HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|93|3|anti-sense HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|93|3|anti-sense HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|93|3|anti-sense MSMS UPN46_class_I_Rep_3 1 508.7867431640625 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 38.041 1 38.041 37.541 38.541 0 0 0 0 0.40604 1 7210 7210 2.5775 1.7838 1 22214 7851 13863 13872 26447 26447 0.053177877509369864 LHHYMWHF 8 Unmodified _LHHYMWHF_ 0 0 0 REV__L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|62|1|anti-sense REV__L1MC2_dup1029|chr3:9484948-9486273:+|1.6107870722887274|0.1240454617402961|3.7|150.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 585.7686157226562 2 585.768729 1169.5229 NaN NaN NaN NaN NaN NaN NaN 71.825 1 71.825 71.325 72.325 0 0 0 0 0.4032 1 16569 16569 6.3541 3.4649 1 + 22215 26632 13864 13873 26448 26448 -0.05507626786311448 LHIDDKVF 8 Unmodified _LHIDDKVF_ 0 0 0 ENST00000469033.1_1_4:40776294-40778281:+|nuORF;nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF;nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7 ENST00000469033.1_1_4:40776294-40778281:+|nuORF ENST00000469033.1_1_4:40776294-40778281:+|nuORF MSMS UPN48_class_I_Rep_2 6 493.76885986328125 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 47.735 1 51.471 50.971 51.971 3.7361 0 0 0 0.39996 1 9461 9461 7.9102 2.6795 1 22216 4856 13865 13874 26449 26449 0.029940714145254788 LHIHNGALF 9 Unmodified _LHIHNGALF_ 0 0 0 L1MA3_dup3896|chr7:36494971-36495872:-|1.02180297039074|0.0534226495660485|4.26|149.0|15|2|sense L1MA3_dup3896|chr7:36494971-36495872:-|1.02180297039074|0.0534226495660485|4.26|149.0|15|2|sense L1MA3_dup3896|chr7:36494971-36495872:-|1.02180297039074|0.0534226495660485|4.26|149.0|15|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 510.78118896484375 2 511.282526 1020.5505 0.29411 0.00015037 0.57347 0.00029321 0.86758 0.00044358 511.28251455128725 53.865 0.11599 57.051 56.996 57.112 3.1856 10 7 2 0 0 0 0.12444 1 12179 12179 2.0598 0 1 32319 22217 9543 13866 13875 26450 26450 0.041045997455512406 LHIKKKLLG 9 Unmodified _LHIKKKLLG_ 0 0 0 REV__Tigger2b_Pri_dup1665|chr13:108273180-108274267:+|1.168613593704203|0.024819161919844|5.56|149.0|55|1|anti-sense REV__Tigger2b_Pri_dup1665|chr13:108273180-108274267:+|1.168613593704203|0.024819161919844|5.56|149.0|55|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.3636474609375 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 76.142 1 79.399 78.899 79.899 3.2573 0 0 0 0.4007 1 18920 18920 0.52476 0 1 + 22218 32692 13867 13876 26451 26451 0.18967768778634309 LHILLNLDLFV 11 Unmodified _LHILLNLDLFV_ 0 0 0 REV__L1ME4a_dup22168|chr10:100170858-100171335:+|1.1945189685735262|0.0287917794850842|5.37|151.0|26|1|anti-sense REV__L1ME4a_dup22168|chr10:100170858-100171335:+|1.1945189685735262|0.0287917794850842|5.37|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 437.26727294921875 3 437.267463 1308.78056 -0.36469 -0.00015947 0.95607 0.00041806 0.59138 0.00025859 437.267787947496 49.613 0.47867 52.839 52.54 53.019 3.2262 38 26 2 0 0 0 0.68081 1 10899 10899 0.45452 0.29519 1 69097 + 22219 28220 13868 13877 26452 26452 0.13851968567837503 LHILLNLDLFV 11 Unmodified _LHILLNLDLFV_ 0 0 0 REV__L1ME4a_dup22168|chr10:100170858-100171335:+|1.1945189685735262|0.0287917794850842|5.37|151.0|26|1|anti-sense REV__L1ME4a_dup22168|chr10:100170858-100171335:+|1.1945189685735262|0.0287917794850842|5.37|151.0|26|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 437.267463 1308.78056 -0.3678 -0.00016082 0.86627 0.00037879 0.49847 0.00021797 437.2677296952869 49.519 0.96284 52.862 52.347 53.31 3.3431 0.011426 -3.8664E-05 NaN 0.45452 100 62 2 NaN NaN NaN NaN 0 NaN NaN 0 138730 + 22220 28220 13868 13877 0.13851968567837503 LHILLNLDLFV 11 Unmodified _LHILLNLDLFV_ 0 0 0 REV__L1ME4a_dup22168|chr10:100170858-100171335:+|1.1945189685735262|0.0287917794850842|5.37|151.0|26|1|anti-sense REV__L1ME4a_dup22168|chr10:100170858-100171335:+|1.1945189685735262|0.0287917794850842|5.37|151.0|26|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 437.267463 1308.78056 -0.36469 -0.00015947 0.95607 0.00041806 0.59138 0.00025859 437.267787947496 49.613 0.47867 52.839 52.54 53.019 3.2262 -0.011426 7.9138E-05 NaN 0.45452 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 69097 + 22221 28220 13868 13877 0.13851968567837503 LHILSGTCCFL 11 Unmodified _LHILSGTCCFL_ 0 0 0 L1PA5_dup9935|chr15:52472399-52478553:-|3.974070447944393|0.0721032808534088|5.78|151.0|189|1|anti-sense;L1PA5_dup2296|chr3:158144132-158146886:-|1.0337100255063454|0.0300039721351333|5.11|151.0|84|1|anti-sense;L1PA4_dup9591|chr12:65345581-65348911:-|1.3296180204792338|0.0264355817601244|5.65|150.0|144|2|anti-sense;L1PA4_dup6324|chr9:229904-236050:-|8.974160791668695|0.0597994361629901|7.23|151.0|178|1|anti-sense L1PA5_dup9935|chr15:52472399-52478553:-|3.974070447944393|0.0721032808534088|5.78|151.0|189|1|anti-sense L1PA5_dup9935|chr15:52472399-52478553:-|3.974070447944393|0.0721032808534088|5.78|151.0|189|1|anti-sense MSMS UPN48_class_I_Rep_3 7 603.8040161132812 2 603.804119 1205.59369 NaN NaN NaN NaN NaN NaN NaN 114.85 1 118.5 118 119 3.6511 0 0 0 0.38417 1 27320 27320 1.3295 0.72803 1 22222 14376 13869 13878 26453 26453 -0.0008871458367138985 LHINIGEEYK 10 Unmodified _LHINIGEEYK_ 0 0 0 REV__ENSG00000176102|ENST00000323959|CSTF3 REV__ENSG00000176102|ENST00000323959|CSTF3 MULTI-SECPEP UPN48_class_I_Rep_2 6 406.21875 3 405.883789 1214.62954 0.091289 3.7053E-05 1.154 0.00046838 1.2453 0.00050543 405.8840350640408 68.083 0.096596 71.591 71.53 71.626 3.5083 20 9 3 0 0 0 0.84575 1 15663 15663 0.77653 0 1 45628 + 22223 20576 13870 13879 26454 26454 0.030807821891812637 LHINIGEEYK 10 Unmodified _LHINIGEEYK_ 0 0 0 REV__ENSG00000176102|ENST00000323959|CSTF3 REV__ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH UPN48_class_I_Rep_1 5 3 405.883789 1214.62954 -0.084953 -3.4481E-05 1.016 0.00041238 0.93104 0.0003779 406.218570925523 67.978 0.40004 71.429 71.258 71.658 3.4517 -0.015581 -5.0453E-05 NaN 0.77653 41 31 2 NaN NaN NaN NaN 0 NaN NaN 0 54415 + 22224 20576 13870 13879 0.030807821891812637 LHINIGEEYK 10 Unmodified _LHINIGEEYK_ 0 0 0 REV__ENSG00000176102|ENST00000323959|CSTF3 REV__ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH UPN48_class_I_Rep_3 7 3 405.883789 1214.62954 0.15199 6.1689E-05 1.1042 0.00044818 1.2562 0.00050987 405.8839652062599 67.807 0.10283 71.314 71.243 71.346 3.5077 -0.13053 5.6956E-05 NaN 0.77653 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 48164 + 22225 20576 13870 13879 0.030807821891812637 LHINKFSCKFK 11 Unmodified _LHINKFSCKFK_ 0 0 0 REV__L1MB8_dup12576|chr13:102659166-102660361:+|1.6821154391418036|0.4208863795043281|2.0|151.0|35|2|sense REV__L1MB8_dup12576|chr13:102659166-102660361:+|1.6821154391418036|0.4208863795043281|2.0|151.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.2576599121094 3 455.58843 1363.74346 -0.49579 -0.00022588 -0.96021 -0.00043746 -1.456 -0.00066334 455.5879849972761 19.102 0.36268 22.492 22.293 22.656 3.3898 49 36 2 0 0 0 0.68024 1 1709 1709 0.50596 0.27011 1 27707 + 22226 26360 13871 13880 26455 26455 0.07613973750403602 LHINYVLE 8 Unmodified _LHINYVLE_ 0 0 0 REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF MSMS UPN46_class_I_Rep_3 1 500.7658996582031 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 110.65 1 110.65 110.15 111.15 0 0 0 0 0.40746 1 27256 27256 0.69038 0 1 + 22227 22509 13872 13881 26456 26456 0.039143579315805255 LHIPPQYL 8 Unmodified _LHIPPQYL_ 0 0 0 nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A nc|ENSG00000159398|Q6NT32-3|CES5A nc|ENSG00000159398|Q6NT32-3|CES5A MSMS UPN47_class_I_Rep_1 2 490.781494140625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.16 116.66 117.66 3.572 0 0 0 0.40738 1 28035 28035 0.79363 0 1 22228 3835 13873 13882 26457 26457 0.05850965656793505 LHIYHQRRQPP 11 Unmodified _LHIYHQRRQPP_ 0 0 0 LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 482.2691345214844 3 482.26886 1443.78475 -0.31731 -0.00015303 0.26947 0.00012996 -0.047842 -2.3073E-05 482.2689280853836 29.765 1.2738 33.523 32.972 34.246 3.7578 138 93 3 0 0 0 0.68024 1 4770 4770 0.50596 0.09769 1 177830 22229 15505 13874 13883 26458 26458 0.08060870834128764 LHIYHQRRQPP 11 Unmodified _LHIYHQRRQPP_ 0 0 0 LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 482.26837158203125 3 482.26886 1443.78475 -0.19996 -9.6434E-05 0.016095 7.7621E-06 -0.18386 -8.8672E-05 482.26884248206846 29.98 1.2706 33.473 33.04 34.31 3.4923 147 103 2 0 0 0 0.68024 1 4889 4889 0.50596 0 1 120970 22230 15505 13874 13883 26459 26459 0.08060870834128764 LHKAPISLI 9 Unmodified _LHKAPISLI_ 0 0 0 REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|105|1|anti-sense REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|105|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.3187561035156 2 496.318577 990.622602 0.18631 9.2471E-05 -0.027636 -1.3716E-05 0.15868 7.8755E-05 496.3184653352489 43.591 0.72828 47.102 46.711 47.439 3.5103 90 60 2 0 0 0 0.37599 1 8168 8168 9.3831 1.473 1 157900 + 22231 23756 13875 13884 26460 26460 0.12691514099276446 LHKAPISLI 9 Unmodified _LHKAPISLI_ 0 0 0 REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|105|1|anti-sense REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|105|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 496.3183898925781 2 496.318577 990.622602 0.20823 0.00010335 0.091866 4.5595E-05 0.3001 0.00014894 496.3185267617958 43.142 0.76676 46.904 46.635 47.402 3.7617 93 60 2 0 0 0 0.37599 1 8049 8049 9.3831 1.473 1 142600 + 22232 23756 13875 13884 26461 26461 0.12691514099276446 LHKHSWDGH 9 Unmodified _LHKHSWDGH_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 558.7682495117188 2 558.770314 1115.52608 NaN NaN NaN NaN NaN NaN NaN 58.875 1 62.373 61.873 62.873 3.4987 0 0 0 0.39428 1 12863 12863 2.0598 0.40713 1 + 22233 23627 13876 13885 26462 26462 -0.027066604079664103 LHKIKAKIV 9 Unmodified _LHKIKAKIV_ 0 0 0 REV__L1MC5a_dup10214|chrX:154071629-154072589:+|3.503574923327112|0.0380033578889536|6.53|151.0|18|2|sense REV__L1MC5a_dup10214|chrX:154071629-154072589:+|3.503574923327112|0.0380033578889536|6.53|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 525.7940063476562 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 114.45 1 117.96 117.46 118.46 3.5109 0 0 0 0.4007 1 27871 27871 0.52476 0 1 + 22234 27103 13877 13886 26463 26463 0.18967768778634309 LHKKKIIII 9 Unmodified _LHKKKIIII_ 0 0 0 AluSz_dup82239|chr16:29523361-29523663:+|2.718198674073042|0.0454576788890262|5.9|150.0|11|3|sense AluSz_dup82239|chr16:29523361-29523663:+|2.718198674073042|0.0454576788890262|5.9|150.0|11|3|sense AluSz_dup82239|chr16:29523361-29523663:+|2.718198674073042|0.0454576788890262|5.9|150.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 553.396484375 2 553.394619 1104.77469 NaN NaN NaN NaN NaN NaN NaN 98.061 1 98.061 97.561 98.561 0 0 0 0 0.4029 1 23872 23872 0 0 1 22235 365 13878 13887 26464 26464 0.22648914846854495 LHKKKKKLKLY 11 Unmodified _LHKKKKKLKLY_ 0 0 0 REV__MER51A_dup897|chr20:8424748-8425415:-|1.412327586877392|0.0082654927153132|7.42|149.0|2|1|sense REV__MER51A_dup897|chr20:8424748-8425415:-|1.412327586877392|0.0082654927153132|7.42|149.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 476.326171875 3 476.325535 1425.95478 NaN NaN NaN NaN NaN NaN NaN 110.12 1 110.12 109.62 110.62 0 0 0 0 0.38417 1 27104 27104 0.08335 0.08335 1 + 22236 31397 13879 13888 26465 26465 0.2588359378385121 LHKKTIDY 8 Unmodified _LHKKTIDY_ 0 0 0 REV__ENST00000471795.1_1_X:129483237-129498727:+|nuORF REV__ENST00000471795.1_1_X:129483237-129498727:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 509.76336669921875 2 509.290017 1016.56548 -0.12807 -6.5223E-05 0.082874 4.2207E-05 -0.045194 -2.3017E-05 509.2899444190149 42.335 0.72429 46.014 45.782 46.506 3.6792 72 49 2 0 0 0 0.82752 1 8665 8665 5.2307 0 1 86720 + 22237 18188 13880 13889 26466 26466 0.057860468229023354 LHKLINQN 8 Unmodified _LHKLINQN_ 0 0 0 REV__L1MB2_dup6768|chr14:90930172-90931539:+|1.006326178034013|0.049777128740304|4.34|151.0|71|1|anti-sense REV__L1MB2_dup6768|chr14:90930172-90931539:+|1.006326178034013|0.049777128740304|4.34|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_1 5 490.28826904296875 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 27.015 1 30.578 30.078 31.078 3.5629 0 0 0 0.40746 1 3412 3412 0.69038 0 1 + 22238 25762 13881 13890 26467 26467 0.07092582399991443 LHKPHHIG 8 Unmodified _LHKPHHIG_ 0 0 0 REV__L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|133|2|anti-sense REV__L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|133|2|anti-sense MSMS UPN48_class_I_Rep_3 7 469.7713928222656 2 469.769586 937.524619 NaN NaN NaN NaN NaN NaN NaN 52.434 1 56.032 55.532 56.532 3.5979 0 0 0 0.40738 1 10828 10828 0.79363 0 1 + 22239 25040 13882 13891 26468 26468 0.053357502939547885 LHKPRWPG 8 Unmodified _LHKPRWPG_ 0 0 0 Tigger3b_dup2446|chr6:35640115-35640974:-|1.7667712859528613|0.1217129630521285|3.86|151.0|48|2|anti-sense Tigger3b_dup2446|chr6:35640115-35640974:-|1.7667712859528613|0.1217129630521285|3.86|151.0|48|2|anti-sense Tigger3b_dup2446|chr6:35640115-35640974:-|1.7667712859528613|0.1217129630521285|3.86|151.0|48|2|anti-sense MSMS UPN47_class_I_Rep_1 2 495.7955322265625 2 495.785236 989.555919 NaN NaN NaN NaN NaN NaN NaN 76.292 1 79.707 79.207 80.207 3.4149 0 0 0 0.40738 1 18873 18873 0.79363 0 1 22240 33375 13883 13892 26469 26469 0.06072323328044149 LHKQRRKKI 9 Unmodified _LHKQRRKKI_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|83|2|sense;L1PA7_dup11718|chr15:42301060-42304391:+|1.3344387139311995|0.0669808402247086|4.32|151.0|82|3|sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|83|2|sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|83|2|sense MSMS UPN46_class_I_Rep_3 1 604.3671875 2 603.898923 1205.78329 NaN NaN NaN NaN NaN NaN NaN 101.2 1 101.2 100.7 101.7 0 0 0 0 0.39428 1 24689 24689 2.0598 0 1 22241 13648 13884 13893 26470 26470 0.18863281536027898 LHKRRRNKIQ 10 Unmodified _LHKRRRNKIQ_ 0 0 0 L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense MSMS UPN47_class_I_Rep_2 3 450.26983642578125 3 450.284733 1347.83237 NaN NaN NaN NaN NaN NaN NaN 69.283 1 72.559 72.059 73.059 3.2761 0 0 0 0.53105 1 16815 16815 0.15932 0 1 22242 14249 13885 13894 26471 26471 0.17236569824967773 LHKTAATMVI 10 Unmodified _LHKTAATMVI_ 0 0 0 REV__ENST00000534425.5_1_11:67431830-67435009:-|nuORF REV__ENST00000534425.5_1_11:67431830-67435009:-|nuORF MSMS UPN47_class_I_Rep_1 2 542.8109130859375 2 542.812802 1083.61105 NaN NaN NaN NaN NaN NaN NaN 33.85 1 37.549 37.049 38.049 3.6983 0 0 0 0.53105 1 6014 6014 5.2969 0.54088 1 + 22243 19031 13886 13895 26472 26472 0.07258949013657912 LHKTSYFKRN 10 Unmodified _LHKTSYFKRN_ 0 0 0 REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|52|3|sense REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|52|3|sense MSMS UPN46_class_I_Rep_3 1 647.3577270507812 2 647.356754 1292.69895 NaN NaN NaN NaN NaN NaN NaN 75.702 1 75.702 75.202 76.202 0 0 0 0 0.53105 1 17617 17617 1.4819 0 1 + 22244 29396 13887 13896 26473 26473 0.06431285928624675 LHKTVHIF 8 Unmodified _LHKTVHIF_ 0 0 0 REV__L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|47|1|sense REV__L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|47|1|sense MSMS UPN48_class_I_Rep_2 6 497.796630859375 2 497.795269 993.575986 NaN NaN NaN NaN NaN NaN NaN 46.987 1 50.737 50.237 51.237 3.7494 0 0 0 0.40581 1 9245 9245 2.8892 0.58649 1 + 22245 30446 13888 13897 26474 26474 0.07894074267983342 LHKVKLLI 8 Unmodified _LHKVKLLI_ 0 0 0 REV__BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|20|2|sense REV__BLACKJACK_dup368|chr3:71554353-71555268:-|1.843858460700964|0.0240802176169337|6.26|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 482.3408508300781 2 482.339313 962.664072 NaN NaN NaN NaN NaN NaN NaN 111.12 1 111.12 110.62 111.62 0 0 0 0 0.40798 1 27385 27385 0 0 1 + 22246 17256 13889 13898 26475 26475 0.18124694858624935 LHKVMKNILHG 11 Unmodified _LHKVMKNILHG_ 0 0 0 L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|3|1|sense L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|3|1|sense L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 645.3773803710938 2 645.379175 1288.7438 NaN NaN NaN NaN NaN NaN NaN 18.654 1 18.654 18.154 19.154 0 0 0 0 0.38417 1 1662 1662 1.1933 0.23107 1 22247 12165 13890 13899 26476 26476 0.11097393470299721 LHKVSHLKLS 10 Unmodified _LHKVSHLKLS_ 0 0 0 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 ENSG00000148082|ENST00000375835|SHC3 MSMS UPN47_class_I_Rep_1 2 581.3618774414062 2 581.358765 1160.70298 NaN NaN NaN NaN NaN NaN NaN 87.945 1 91.602 91.102 92.102 3.6563 0 0 0 0.53105 1 21987 21987 1.3295 0.72803 1 22248 3491 13891 13900 26477 26477 0.12905375422315046 LHKYYHRRSKK 11 Unmodified _LHKYYHRRSKK_ 0 0 0 REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|67|2|sense REV__L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|67|2|sense MSMS UPN46_class_I_Rep_3 1 505.6890869140625 3 505.960026 1514.85825 NaN NaN NaN NaN NaN NaN NaN 70.059 1 70.059 69.559 70.559 0 0 0 0 0.38417 1 16081 16081 1.3296 0.82369 1 + 22249 29143 13892 13901 26478 26478 0.12141419276576926 LHLCPQRQ 8 Unmodified _LHLCPQRQ_ 0 0 0 L1ME2z_dup6038|chr17:2121105-2121511:+|1.0359000748115308|0.0108759716263579|6.57|150.0|28|3|anti-sense L1ME2z_dup6038|chr17:2121105-2121511:+|1.0359000748115308|0.0108759716263579|6.57|150.0|28|3|anti-sense L1ME2z_dup6038|chr17:2121105-2121511:+|1.0359000748115308|0.0108759716263579|6.57|150.0|28|3|anti-sense MSMS UPN48_class_I_Rep_1 5 497.7660827636719 2 497.766186 993.517819 NaN NaN NaN NaN NaN NaN NaN 72.647 1 76.12 75.62 76.62 3.4732 0 0 0 0.40604 1 17064 17064 2.5775 0 1 22250 12573 13893 13902 26479 26479 0.020800693510636847 LHLFDSSLY 9 Unmodified _LHLFDSSLY_ 0 0 0 L1PA5_dup739|chr1:246239111-246242505:-|8.442146572548793|0.0832267373278921|6.66|151.0|135|1|anti-sense;L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|214|3|anti-sense L1PA5_dup739|chr1:246239111-246242505:-|8.442146572548793|0.0832267373278921|6.66|151.0|135|1|anti-sense L1PA5_dup739|chr1:246239111-246242505:-|8.442146572548793|0.0832267373278921|6.66|151.0|135|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 547.7797241210938 2 547.779482 1093.54441 0.49516 0.00027124 -0.25842 -0.00014156 0.23674 0.00012968 547.7791218995653 54.425 0.53412 57.743 57.49 58.024 3.3187 35 26 2 0 0 0 0.33654 1 12337 12337 11.64 0 1 85556 22251 13494 13894 13903 26480 26480 0.0013803672338781325 LHLFPWQYF 9 Unmodified _LHLFPWQYF_ 0 0 0 REV__L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|194|1|anti-sense REV__L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|194|1|anti-sense MSMS UPN48_class_I_Rep_1 5 625.8225708007812 2 625.821484 1249.62842 NaN NaN NaN NaN NaN NaN NaN 54.572 1 58.086 57.586 58.586 3.5143 0 0 0 0.40038 1 11567 11567 0.6015 0.076735 1 + 22252 30066 13895 13904 26481 26481 0.013586126109203178 LHLHPLDL 8 Unmodified _LHLHPLDL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1;MDN1|p.A5053Hfs*69|1|0.04|ENSG00000112159|chr6:89658236-89658236|G/-|frameshift_variant ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS UPN48_class_I_Rep_1 5 479.27716064453125 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 74.367 1 77.857 77.357 78.357 3.49 0 0 0 0.4044 1 17570 17570 4.756 0.42677 1 22253 2000 13896 13905 26482 26482 0.0643408151404401 LHLKRDSF 8 Unmodified _LHLKRDSF_ 0 0 0 HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|266|2|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|266|2|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|266|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.287841796875 2 508.287808 1014.56106 0.21117 0.00010734 -0.33525 -0.0001704 -0.12408 -6.3069E-05 508.287571502724 48.431 1.4095 51.955 51.47 52.88 3.5239 239 101 3 0 0 0 0.82752 1 9821 9821 26.884 0 1 1219100 22254 8207 13897 13906 26483 26483 0.05436582399988765 LHLKRGAR 8 Unmodified _LHLKRGAR_ 0 0 0 REV__nc|ENSG00000183784|Q5T8R8|DOCK8-AS1 REV__nc|ENSG00000183784|Q5T8R8|DOCK8-AS1 MSMS UPN46_class_I_Rep_3 1 475.8023681640625 2 475.80396 949.593367 NaN NaN NaN NaN NaN NaN NaN 91.721 1 91.721 91.221 92.221 0 0 0 0 0.40746 1 22166 22166 0.69038 0 1 + 22255 32082 13898 13907 26484 26484 0.11655414593656133 LHLLGRGGF 9 Unmodified _LHLLGRGGF_ 0 0 0 nc|ENSG00000198586|Q9UKI8-2|TLK1;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|4|intron;nc|ENSG00000146872|Q86UE8|TLK2;ENSG00000198586|ENST00000431350|TLK1;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2;nc|ENSG00000198586|Q9UKI8-5|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-3|TLK1;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|5|intron;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|3|intron;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|1|intron;ENSG00000146872.18,TLK2,chr17,+,I21.1,62578575,62580110|24|4.95|2|intron;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;ENST00000456760.1_1_9:125449379-125449940:+|nuORF;ENSG00000146872.18,TLK2,chr17,+,I21.1,62578575,62580110|24|4.95|1|intron nc|ENSG00000198586|Q9UKI8-2|TLK1 nc|ENSG00000198586|Q9UKI8-2|TLK1 MSMS UPN48_class_I_Rep_3 7 485.2846984863281 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 58.491 1 62.014 61.514 62.514 3.5231 0 0 0 0.39428 1 12680 12680 2.0598 1.2661 1 22256 3451 13899 13908 26485 26485 0.07004903608196855 LHLLLLLLLLL 11 Unmodified _LHLLLLLLLLL_ 0 0 0 REV__ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron REV__ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron MSMS UPN48_class_I_Rep_1 5 643.9650268554688 2 643.962335 1285.91012 NaN NaN NaN NaN NaN NaN NaN 39.234 1 42.739 42.239 43.239 3.5048 0 0 0 0.38417 1 6902 6902 0 0 1 + 22257 21118 13900 13909 26486 26486 0.27859769917813537 LHLLLLLLLLL 11 Unmodified _LHLLLLLLLLL_ 0 0 0 REV__ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron REV__ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron MSMS UPN48_class_I_Rep_3 7 643.6310424804688 2 643.962335 1285.91012 NaN NaN NaN NaN NaN NaN NaN 38.465 1 42.125 41.625 42.625 3.6595 0 0 0 0.38417 1 6613 6613 0 0 1 + 22258 21118 13900 13909 26487 26487 0.27859769917813537 LHLLNMKIK 9 Unmodified _LHLLNMKIK_ 0 0 0 Tigger2a_dup2950|chr17:31276841-31277270:-|1.40454893898398|0.0081742487677078|7.42|150.0|11|3|sense Tigger2a_dup2950|chr17:31276841-31277270:-|1.40454893898398|0.0081742487677078|7.42|150.0|11|3|sense Tigger2a_dup2950|chr17:31276841-31277270:-|1.40454893898398|0.0081742487677078|7.42|150.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 555.3458251953125 2 555.346812 1108.67907 NaN NaN NaN NaN NaN NaN NaN 87.575 1 90.963 90.463 91.463 3.3873 0 0 0 0.39518 1 21948 21948 1.8442 0 1 22259 33336 13901 13910 26488 26488 0.12907818664280057 LHLPKLVIVL 10 Unmodified _LHLPKLVIVL_ 0 0 0 REV__LTR6B_dup62|chr7:139091867-139092425:-|1.261459755406835|0.0220955255691634|5.84|151.0|10|2|sense REV__LTR6B_dup62|chr7:139091867-139092425:-|1.261459755406835|0.0220955255691634|5.84|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 572.8928833007812 2 572.894452 1143.77435 NaN NaN NaN NaN NaN NaN NaN 108.71 1 108.71 108.21 109.21 0 0 0 0 0.53105 1 26603 26603 0.45834 0 1 + 22260 30992 13902 13911 26489 26489 0.20821495126961054 LHLQHFWH 8 Unmodified _LHLQHFWH_ 0 0 0 MER21C_dup3416|chr10:100942047-100942492:-|1.4943999156441137|0.2812668809615282|2.41|151.0|22|1|anti-sense MER21C_dup3416|chr10:100942047-100942492:-|1.4943999156441137|0.2812668809615282|2.41|151.0|22|1|anti-sense MER21C_dup3416|chr10:100942047-100942492:-|1.4943999156441137|0.2812668809615282|2.41|151.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.2628173828125 2 559.288143 1116.56173 0.048325 2.7027E-05 1.237 0.00069183 1.2853 0.00071886 559.2887227235102 15.143 0.39217 18.529 18.339 18.731 3.3864 58 43 2 0 0 0 0.82752 1 699 699 0.79363 0.19213 1 24747 22261 15898 13903 13912 26490 26490 0.00811421839716786 LHLQPQQIMQ 10 Unmodified _LHLQPQQIMQ_ 0 0 0 nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF nc|ENSG00000157212|Q6ZW49-2|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 MSMS UPN48_class_I_Rep_3 7 618.33056640625 2 618.33189 1234.64923 NaN NaN NaN NaN NaN NaN NaN 46.246 1 49.883 49.383 50.383 3.6369 0 0 0 0.53105 1 8946 8946 1.4819 0.28856 1 22262 3755 13904 13913 26491 26491 0.041288349282922354 LHLRLRHS 8 Unmodified _LHLRLRHS_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|176|2|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|176|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.3134155273438 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 102.95 1 106.46 105.96 106.96 3.5057 0 0 0 0.40738 1 25285 25285 0.79363 0 1 + 22263 31402 13905 13914 26492 26492 0.10074799622339015 LHLWMNRL 8 Unmodified _LHLWMNRL_ 0 0 0 REV__L1MC2_dup4183|chr11:3099099-3099551:+|2.2529937751377034|0.3558635825763317|2.66|151.0|8|2|sense REV__L1MC2_dup4183|chr11:3099099-3099551:+|2.2529937751377034|0.3558635825763317|2.66|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 541.8012084960938 2 541.800029 1081.5855 NaN NaN NaN NaN NaN NaN NaN 34.104 1 37.79 37.29 38.29 3.6859 0 0 0 0.40625 1 6093 6093 2.3027 0 1 + 22264 26670 13906 13915 26493 26493 0.04797519281851237 LHLWWTVY 8 Unmodified _LHLWWTVY_ 0 0 0 ENST00000381161.5_1_X:2748138-2799251:+|nuORF;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;nc|ENSG00000056998|O15488-5|GYG2 ENST00000381161.5_1_X:2748138-2799251:+|nuORF ENST00000381161.5_1_X:2748138-2799251:+|nuORF MSMS UPN48_class_I_Rep_3 7 559.29443359375 2 559.295102 1116.57565 NaN NaN NaN NaN NaN NaN NaN 28.031 1 31.774 31.274 32.274 3.7424 0 0 0 0.40738 1 3759 3759 0.79363 0 1 22265 949 13907 13916 26494 26494 0.022026545481139692 LHLYANQY 8 Unmodified _LHLYANQY_ 0 0 0 REV__ENSG00000166535|ENST00000299698|A2ML1 REV__ENSG00000166535|ENST00000299698|A2ML1 MSMS UPN48_class_I_Rep_2 6 511.2584228515625 2 511.258717 1020.50288 NaN NaN NaN NaN NaN NaN NaN 43.656 1 47.418 46.918 47.918 3.7617 0 0 0 0.40364 1 8230 8230 5.7604 0.52976 1 + 22266 20180 13908 13917 26495 26495 -0.006550992452957871 LHMKGILKLQ 10 Unmodified _LHMKGILKLQ_ 0 0 0 ENSG00000148488|ENST00000377602|ST8SIA6 ENSG00000148488|ENST00000377602|ST8SIA6 ENSG00000148488|ENST00000377602|ST8SIA6 MSMS UPN48_class_I_Rep_3 7 590.8682250976562 2 590.865369 1179.71618 NaN NaN NaN NaN NaN NaN NaN 114.85 1 118.5 118 119 3.6511 0 0 0 0.53105 1 27319 27319 0.40072 0 1 22267 3513 13909 13918 26496 26496 0.13351490210061456 LHMLPIIH 8 Unmodified _LHMLPIIH_ 0 0 0 REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106 REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106 MSMS UPN47_class_I_Rep_3 4 487.2875671386719 2 487.286223 972.557893 NaN NaN NaN NaN NaN NaN NaN 26.858 1 30.2 29.7 30.7 3.3422 0 0 0 0.40738 1 3993 3993 0.79363 0 1 + 22268 18244 13910 13919 26497 26497 0.07051616021647078 LHMTLYNTQL 10 Unmodified _LHMTLYNTQL_ 0 0 0 REV__L1MA3_dup8040|chr17:6886486-6889219:-|1.3543894157080896|0.2604703125751324|2.38|151.0|68|3|sense REV__L1MA3_dup8040|chr17:6886486-6889219:-|1.3543894157080896|0.2604703125751324|2.38|151.0|68|3|sense MSMS UPN48_class_I_Rep_2 6 617.317138671875 2 617.318448 1232.62234 NaN NaN NaN NaN NaN NaN NaN 56.577 1 60.111 59.611 60.611 3.5333 0 0 0 0.53105 1 12162 12162 4.1895 0.90819 1 + 22269 25117 13911 13920 26498 26498 0.01533726317120454 LHNMRVYG 8 Unmodified _LHNMRVYG_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MULTI-SECPEP UPN48_class_I_Rep_2 6 494.7190246582031 2 495.252911 988.49127 0.35799 0.0001773 1.7464 0.00086489 2.1043 0.0010422 495.25370415602345 19.284 0.090523 22.933 22.896 22.986 3.6497 14 10 2 0 0 0 0.72333 1 1446 1446 2.5775 0 1 27999 22270 2047 13912 13921 26499 26499 -0.0034361954026280728 LHNNYGNQF 9 Unmodified _LHNNYGNQF_ 0 0 0 L1MB8_dup3970|chr4:99931957-99933171:+|1.3349911595858497|0.0839054025467883|3.99|151.0|47|1|anti-sense L1MB8_dup3970|chr4:99931957-99933171:+|1.3349911595858497|0.0839054025467883|3.99|151.0|47|1|anti-sense L1MB8_dup3970|chr4:99931957-99933171:+|1.3349911595858497|0.0839054025467883|3.99|151.0|47|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 553.30224609375 2 553.75433 1105.49411 0.51526 0.00028533 -3.3572 -0.0018591 -2.8419 -0.0015737 553.752399351478 58.375 0.065681 61.657 61.621 61.687 3.2818 5 3 2 0 0 0 0.12281 1 13498 13498 4.3292 0.38484 1 141970 22271 11002 13913 13922 26500 26500 -0.05442072881783133 LHNRIIMAE 9 Unmodified _LHNRIIMAE_ 0 0 0 REV__MLT1F2_dup4471|chr13:51704884-51705421:+|1.6054441833298772|0.0842901541463693|4.25|151.0|35|3|anti-sense REV__MLT1F2_dup4471|chr13:51704884-51705421:+|1.6054441833298772|0.0842901541463693|4.25|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_1 2 548.8026733398438 2 548.800226 1095.5859 NaN NaN NaN NaN NaN NaN NaN 69.361 1 72.729 72.229 73.229 3.3678 0 0 0 0.39518 1 16801 16801 1.8442 0 1 + 22272 31718 13914 13923 26501 26501 0.04192894211064413 LHPFPSDS 8 Unmodified _LHPFPSDS_ 0 0 0 REV__Tigger1_dup3614|chr4:153370819-153372334:-|1.724747175250568|0.4461990466272801|1.95|151.0|36|3|sense REV__Tigger1_dup3614|chr4:153370819-153372334:-|1.724747175250568|0.4461990466272801|1.95|151.0|36|3|sense MSMS UPN48_class_I_Rep_3 7 450.29534912109375 2 450.216517 898.418482 NaN NaN NaN NaN NaN NaN NaN 55.762 1 59.317 58.817 59.817 3.5554 0 0 0 0.40738 1 11852 11852 0.79363 0 1 + 22273 32427 13915 13924 26502 26502 -0.03479050062037459 LHPGHLGT 8 Unmodified _LHPGHLGT_ 0 0 0 ENST00000441052.1_1_7:44080670-44080838:+|nuORF ENST00000441052.1_1_7:44080670-44080838:+|nuORF ENST00000441052.1_1_7:44080670-44080838:+|nuORF MSMS UPN46_class_I_Rep_3 1 416.3009033203125 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 72.246 1 72.246 71.746 72.746 0 0 0 0 0.40738 1 16690 16690 0.79363 0 1 22274 6775 13916 13925 26503 26503 0.017883797573517768 LHPGWWGFF 9 Unmodified _LHPGWWGFF_ 0 0 0 MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|71|3|anti-sense MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|71|3|anti-sense MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7807006835938 2 573.779619 1145.54469 NaN NaN NaN NaN NaN NaN NaN 15.601 1 19.097 18.597 19.597 3.4968 0 0 0 0.40038 1 857 857 0.6015 0 1 22275 16087 13917 13926 26504 26504 -0.022264987660946645 LHPHDPVRWP 10 Unmodified _LHPHDPVRWP_ 0 0 0 ENST00000263368.8_1_19:40964440-40971651:-|nuORF ENST00000263368.8_1_19:40964440-40971651:-|nuORF ENST00000263368.8_1_19:40964440-40971651:-|nuORF MSMS UPN48_class_I_Rep_1 5 627.3279418945312 2 627.330539 1252.64652 NaN NaN NaN NaN NaN NaN NaN 59.757 1 63.237 62.737 63.737 3.4801 0 0 0 0.53105 1 13159 13159 3.9444 0.3479 1 22276 5978 13918 13927 26505 26505 0.030307475856488963 LHPHHLSF 8 Unmodified _LHPHHLSF_ 0 0 0 L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|52|3|anti-sense L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|52|3|anti-sense L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_2 6 494.26055908203125 2 494.261594 986.508634 NaN NaN NaN NaN NaN NaN NaN 45.411 1 49.169 48.669 49.669 3.7579 0 0 0 0.39624 1 8763 8763 9.3474 0 1 22277 9307 13919 13928 26506 26506 0.014840440570424107 LHPHHLSF 8 Unmodified _LHPHHLSF_ 0 0 0 L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|52|3|anti-sense L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|52|3|anti-sense L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_2 6 494.26080322265625 2 494.261594 986.508634 NaN NaN NaN NaN NaN NaN NaN 45.835 1 49.593 49.093 50.093 3.7579 0 0 0 0.40364 1 8890 8890 5.7604 0 1 22278 9307 13919 13928 26507 26507 0.014840440570424107 LHPHRHLL 8 Unmodified _LHPHRHLL_ 0 0 0 L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|85|3|anti-sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|85|3|anti-sense L1MB8_dup1038|chr1:243357772-243359047:+|1.035818197785191|0.054902904250922|4.24|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.3051147460938 2 511.80396 1021.59337 -0.19275 -9.8653E-05 -1.4213 -0.00072743 -1.6141 -0.00082608 511.803022879563 40.495 0.63926 43.732 43.37 44.009 3.2372 48 38 2 0 0 0 0.82752 1 8113 8113 5.2307 0.90143 1 66291 22279 10897 13920 13929 26508 26508 0.08343414593662146 LHPIKYFLF 9 Unmodified _LHPIKYFLF_ 0 0 0 MER57E1_dup326|chr10:47531597-47531957:+|1.8838971126124104|0.4751163591833869|1.99|150.0|9|2|sense MER57E1_dup326|chr10:47531597-47531957:+|1.8838971126124104|0.4751163591833869|1.99|150.0|9|2|sense MER57E1_dup326|chr10:47531597-47531957:+|1.8838971126124104|0.4751163591833869|1.99|150.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 589.3421020507812 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 87.547 1 90.934 90.434 91.434 3.3873 0 0 0 0.39326 1 21940 21940 2.3027 1.7012 1 22280 16131 13921 13930 26509 26509 0.08828373650385402 LHPKGIIRAHN 11 Unmodified _LHPKGIIRAHN_ 0 0 0 REV__L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|107|2|sense REV__L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|107|2|sense MSMS UPN46_class_I_Rep_3 1 628.3746337890625 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 34.56 1 34.56 34.06 35.06 0 0 0 0 0.38417 1 6185 6185 1.1933 0.66858 1 + 22281 30354 13922 13931 26510 26510 0.11374698402414651 LHPLGLTYP 9 Unmodified _LHPLGLTYP_ 0 0 0 LTR16E2_dup399|chr3:32468784-32469205:+|1.0262198784237309|0.0564061305158007|4.19|151.0|1|1|sense LTR16E2_dup399|chr3:32468784-32469205:+|1.0262198784237309|0.0564061305158007|4.19|151.0|1|1|sense LTR16E2_dup399|chr3:32468784-32469205:+|1.0262198784237309|0.0564061305158007|4.19|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 505.787353515625 2 505.78711 1009.55967 0.2481 0.00012549 -0.26054 -0.00013178 -0.012438 -6.2908E-06 505.7869750986289 57.366 0.56602 60.657 60.432 60.998 3.2912 85 46 2 0 0 0 0.40174 1 13277 13277 7.9102 7.9102 1 143480 22282 15577 13923 13932 26511 26511 0.05526948311216984 LHPLLIILKKM 11 Unmodified _LHPLLIILKKM_ 0 0 0 HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.2923889160156 3 440.292955 1317.85703 0.077414 3.4085E-05 -1.0007 -0.00044058 -0.92324 -0.0004065 440.2922029404469 57.637 1.8919 61.131 60.162 62.054 3.4942 305 144 4 0 0 0 0.68024 1 12594 12594 0.50596 0 1 870610 22283 8320 13924 13933 26512 26512 0.21082068863461245 LHPLLIILKKM 11 Unmodified _LHPLLIILKKM_ 0 0 0 HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 440.292955 1317.85703 0.086509 3.8089E-05 -1.5944 -0.000702 -1.5079 -0.00066391 440.2921432053319 61.145 0.43757 61.145 60.92 61.358 0 -0.034752 -0.00021384 NaN 0.50596 93 53 3 NaN NaN NaN NaN 0 NaN NaN 0 399700 22284 8320 13924 13933 0.21082068863461245 LHPLLIILKKM 11 Unmodified _LHPLLIILKKM_ 0 0 0 HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|42|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 440.292955 1317.85703 0.039925 1.7579E-05 -1.494 -0.00065779 -1.4541 -0.00064021 440.2922235474751 57.767 0.095226 61.204 61.138 61.234 3.437 0.023542 -8.1224E-05 NaN 0.50596 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 23750 22285 8320 13924 13933 0.21082068863461245 LHPTYVESFY 10 Unmodified _LHPTYVESFY_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|81|3|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|81|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 628.3023071289062 2 628.303321 1254.59209 0.39 0.00024504 1.2367 0.00077701 1.6267 0.0010221 628.3032866802105 61.136 0.58799 64.301 64.02 64.608 3.1651 98 50 3 0 0 0 0.56033 1 14418 14418 3.5965 0 1 213300 + 22286 24135 13925 13934 26513 26513 -0.025023090764079825 LHPVQFYLT 9 Unmodified _LHPVQFYLT_ 0 0 0 ENSG00000145331|ENST00000394876|TRMT10A ENSG00000145331|ENST00000394876|TRMT10A ENSG00000145331|ENST00000394876|TRMT10A MULTI-MSMS UPN48_class_I_Rep_2 6 559.3059692382812 2 559.305667 1116.59678 0.48759 0.00027271 -0.2666 -0.00014911 0.22099 0.0001236 559.30546005013 71.927 0.66254 75.478 75.154 75.816 3.5505 96 71 2 0 0 0 0.46869 1 16726 16726 3.9444 0.94915 1 112560 22287 3391 13926 13935 26514 26514 0.04314619856995705 LHQFTEKKF 9 Unmodified _LHQFTEKKF_ 0 0 0 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 MSMS UPN46_class_I_Rep_3 1 589.3224487304688 2 589.321848 1176.62914 NaN NaN NaN NaN NaN NaN NaN 101.14 1 101.14 100.64 101.64 0 0 0 0 0.39598 1 24675 24675 1.6526 0.32309 1 22288 2279 13927 13936 26515 26515 0.04789407259977452 LHQKKKKKKK 10 Unmodified _LHQKKKKKKK_ 0 0 0 AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|3|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|10|3|sense AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense MSMS UPN47_class_I_Rep_3 4 647.4449462890625 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 107.85 1 111.38 110.88 111.88 3.5382 0 0 0 0.53105 1 26342 26342 1.6526 0 1 22289 303 13928 13937 26516 26516 0.24213580918444677 LHQKKKKKKK 10 Unmodified _LHQKKKKKKK_ 0 0 0 AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|3|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|10|3|sense AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 647.4461059570312 2 647.445706 1292.87686 0.43865 0.000284 -0.90521 -0.00058608 -0.46656 -0.00030207 647.4448965624148 108.06 0.47457 111.69 111.43 111.91 3.6313 87 39 3 0 0 0 0.56478 1 26101 26101 0.45834 0 1 2819700 22290 303 13928 13937 26517 26517 0.24213580918444677 LHQKKKKKKK 10 Unmodified _LHQKKKKKKK_ 0 0 0 AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|3|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|10|3|sense AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 647.4454345703125 2 647.445706 1292.87686 0.50147 0.00032468 -0.91255 -0.00059083 -0.41108 -0.00026615 647.4449343719858 108.17 0.3595 111.84 111.72 112.08 3.6746 64 40 2 0 0 0 0.56478 1 25668 25668 0.45834 0 1 4137600 22291 303 13928 13937 26518 26518 0.24213580918444677 LHQLLRQWRV 10 Unmodified _LHQLLRQWRV_ 0 0 0 REV__ENSG00000137877|ENST00000320955|SPTBN5 REV__ENSG00000137877|ENST00000320955|SPTBN5 MSMS UPN47_class_I_Rep_1 2 449.7894287109375 3 450.270201 1347.78877 NaN NaN NaN NaN NaN NaN NaN 68.53 1 71.895 71.395 72.395 3.3646 0 0 0 0.53105 1 16550 16550 0.15932 0 1 + 22292 19252 13929 13938 26519 26519 0.12878960327816458 LHQLSMKY 8 Unmodified _LHQLSMKY_ 0 0 0 REV__L1MC4_dup15387|chr10:49846793-49847975:+|1.3236144734595443|0.0079485666741557|7.38|151.0|31|3|sense REV__L1MC4_dup15387|chr10:49846793-49847975:+|1.3236144734595443|0.0079485666741557|7.38|151.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 510.71917724609375 2 510.27077 1018.52699 NaN NaN NaN NaN NaN NaN NaN 44.055 1 47.694 47.194 48.194 3.6385 0 0 0 0.40604 1 8274 8274 2.5775 0 1 + 22293 26822 13930 13939 26520 26520 0.018464179167267503 LHQRPKHH 8 Unmodified _LHQRPKHH_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense MSMS UPN47_class_I_Rep_3 4 526.7969360351562 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 21.731 1 25.081 24.581 25.581 3.3496 0 0 0 0.40746 1 2480 2480 0.69038 0 1 + 22294 29419 13931 13940 26521 26521 0.05505342445530914 LHQRPKHH 8 Unmodified _LHQRPKHH_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense MSMS UPN47_class_I_Rep_3 4 526.7971801757812 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 21.927 1 25.277 24.777 25.777 3.3496 0 0 0 0.40746 1 2538 2538 0.69038 0 1 + 22295 29419 13931 13940 26522 26522 0.05505342445530914 LHQRPKHH 8 Unmodified _LHQRPKHH_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7968139648438 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 18.641 1 22.292 21.792 22.792 3.6509 0 0 0 0.40746 1 1282 1282 0.69038 0 1 + 22296 29419 13931 13940 26523 26523 0.05505342445530914 LHQRPKHH 8 Unmodified _LHQRPKHH_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|234|1|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7972412109375 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 21.815 1 25.461 24.961 25.961 3.6459 0 0 0 0.40746 1 2124 2124 0.69038 0 1 + 22297 29419 13931 13940 26524 26524 0.05505342445530914 LHQSERLIEE 10 Unmodified _LHQSERLIEE_ 0 0 0 REV__chrX:148809920-148842966|125|15.88|0.93|4.09|+|0|AFF2,AFF2|1 REV__chrX:148809920-148842966|125|15.88|0.93|4.09|+|0|AFF2,AFF2|1 MSMS UPN48_class_I_Rep_1 5 627.3296508789062 2 627.327859 1252.64116 NaN NaN NaN NaN NaN NaN NaN 59.805 1 63.285 62.785 63.785 3.4801 0 0 0 0.53105 1 13173 13173 1.4819 0 1 + 22298 17461 13932 13941 26525 26525 0.024949792125198655 LHQTLTQA 8 Unmodified _LHQTLTQA_ 0 0 0 Tigger1_dup164|chr1:40728938-40729679:-|1.2107702984255329|0.1131957676006024|3.42|151.0|17|3|sense Tigger1_dup164|chr1:40728938-40729679:-|1.2107702984255329|0.1131957676006024|3.42|151.0|17|3|sense Tigger1_dup164|chr1:40728938-40729679:-|1.2107702984255329|0.1131957676006024|3.42|151.0|17|3|sense MSMS UPN46_class_I_Rep_3 1 456.2516784667969 2 456.250892 910.48723 NaN NaN NaN NaN NaN NaN NaN 73.501 1 73.501 73.001 74.001 0 0 0 0 0.40659 1 17039 17039 1.8442 0 1 22299 33039 13933 13942 26526 26526 0.02840614237675254 LHQTLTQA 8 Unmodified _LHQTLTQA_ 0 0 0 Tigger1_dup164|chr1:40728938-40729679:-|1.2107702984255329|0.1131957676006024|3.42|151.0|17|3|sense Tigger1_dup164|chr1:40728938-40729679:-|1.2107702984255329|0.1131957676006024|3.42|151.0|17|3|sense Tigger1_dup164|chr1:40728938-40729679:-|1.2107702984255329|0.1131957676006024|3.42|151.0|17|3|sense MSMS UPN46_class_I_Rep_3 1 456.25244140625 2 456.250892 910.48723 NaN NaN NaN NaN NaN NaN NaN 86.962 1 86.962 86.462 87.462 0 0 0 0 0.40659 1 20813 20813 1.8442 0 1 22300 33039 13933 13942 26527 26527 0.02840614237675254 LHRFRCRC 8 Unmodified _LHRFRCRC_ 0 0 0 ENST00000407925.5_1_2:33572554-33585718:+|nuORF ENST00000407925.5_1_2:33572554-33585718:+|nuORF ENST00000407925.5_1_2:33572554-33585718:+|nuORF MSMS UPN46_class_I_Rep_3 1 545.7797241210938 2 545.779105 1089.54366 NaN NaN NaN NaN NaN NaN NaN 91.44 1 91.44 90.94 91.94 0 0 0 0 0.40625 1 22089 22089 2.3027 0 1 22301 6620 13934 13943 26528 26528 0.002466403217113111 LHRGIENKEF 10 Unmodified _LHRGIENKEF_ 0 0 0 ENST00000411491.5_1_7:102916053-102920599:-|nuORF;ENST00000312132.8_1_7:102916053-102920599:-|nuORF ENST00000411491.5_1_7:102916053-102920599:-|nuORF ENST00000411491.5_1_7:102916053-102920599:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 415.5594482421875 3 414.891166 1241.65167 0.10768 4.4676E-05 0.15584 6.4657E-05 0.26352 0.00010933 415.2255490491348 91.179 0.23219 95.042 94.908 95.141 3.8634 38 33 2 0 0 0 0.52562 1 21628 21628 5.0475 0 1 4261200 22302 6111 13935 13944 26529 26529 0.0405100665759619 LHRIGKKLLLK 11 Unmodified _LHRIGKKLLLK_ 0 0 0 L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|54|1|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|54|1|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|54|1|sense MSMS UPN48_class_I_Rep_1 5 440.3218994140625 3 440.306363 1317.89726 NaN NaN NaN NaN NaN NaN NaN 109.67 1 113.31 112.81 113.81 3.6326 0 0 0 0.38417 1 26640 26640 0.45452 0 1 22303 14463 13936 13945 26530 26530 0.2510275157826527 LHRIGKKLLLK 11 Unmodified _LHRIGKKLLLK_ 0 0 0 L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|54|1|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|54|1|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|54|1|sense MSMS UPN48_class_I_Rep_1 5 440.3217468261719 3 440.306363 1317.89726 NaN NaN NaN NaN NaN NaN NaN 109.79 1 113.43 112.93 113.93 3.6326 0 0 0 0.38417 1 26667 26667 0.45452 0 1 22304 14463 13936 13945 26531 26531 0.2510275157826527 LHRIGVLGS 9 Unmodified _LHRIGVLGS_ 0 0 0 Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|33|2|anti-sense Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|33|2|anti-sense Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|33|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 476.1978759765625 2 476.290351 950.566149 -0.83001 -0.00039532 0.59836 0.00028499 -0.23165 -0.00011033 476.2908027145278 13.915 0.17956 17.284 17.195 17.374 3.3697 29 19 2 0 0 0 0.12551 1 444 444 0 0 1 27610 22305 33022 13937 13946 26532 26532 0.08888886262639062 LHRIKTIE 8 Unmodified _LHRIKTIE_ 0 0 0 REV__ENST00000551727.5_1_12:104529277-104531339:-|nuORF REV__ENST00000551727.5_1_12:104529277-104531339:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 505.3112487792969 2 505.311284 1008.60801 -0.039221 -1.9819E-05 0.096329 4.8676E-05 0.057108 2.8857E-05 505.31132651400725 45.459 1.4631 48.812 48.263 49.726 3.3534 151 90 2 0 0 0 0.82752 1 9504 9504 9.3474 0 1 226670 + 22306 22962 13938 13947 26533 26533 0.10405441951149896 LHRIRKSI 8 Unmodified _LHRIRKSI_ 0 0 0 L1P3_dup3128|chr17:29903923-29905350:+|1.3015736788769088|0.0089025101586261|7.19|149.0|23|2|sense L1P3_dup3128|chr17:29903923-29905350:+|1.3015736788769088|0.0089025101586261|7.19|149.0|23|2|sense L1P3_dup3128|chr17:29903923-29905350:+|1.3015736788769088|0.0089025101586261|7.19|149.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 512.2514038085938 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 20.227 1 23.579 23.079 24.079 3.3514 0 0 0 0.40753 1 2046 2046 0.6015 0 1 22307 13543 13939 13948 26534 26534 0.1409225679924475 LHRLFKKKK 9 Unmodified _LHRLFKKKK_ 0 0 0 REV__HAL1M8_dup88|chr1:173770711-173771267:+|1.422719081447034|0.1816538321717936|2.97|151.0|22|3|sense REV__HAL1M8_dup88|chr1:173770711-173771267:+|1.422719081447034|0.1816538321717936|2.97|151.0|22|3|sense MSMS UPN48_class_I_Rep_1 5 599.8023071289062 2 599.400767 1196.78698 NaN NaN NaN NaN NaN NaN NaN 73.741 1 77.222 76.722 77.722 3.4812 0 0 0 0.4007 1 17393 17393 0.52476 0.12405 1 + 22308 23478 13940 13949 26535 26535 0.19645951309894372 LHRLILLLIAF 11 Unmodified _LHRLILLLIAF_ 0 0 0 nc|ENSG00000166507|P52849-2|NDST2;ENSG00000166507|ENST00000309979|NDST2 nc|ENSG00000166507|P52849-2|NDST2 nc|ENSG00000166507|P52849-2|NDST2 MSMS UPN46_class_I_Rep_3 1 441.29736328125 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 99.976 1 99.976 99.476 100.48 0 0 0 0 0.38417 1 24369 24369 0.50596 0 1 22309 4245 13941 13950 26536 26536 0.2169654445544893 LHRLILLLIAF 11 Unmodified _LHRLILLLIAF_ 0 0 0 nc|ENSG00000166507|P52849-2|NDST2;ENSG00000166507|ENST00000309979|NDST2 nc|ENSG00000166507|P52849-2|NDST2 nc|ENSG00000166507|P52849-2|NDST2 MSMS UPN48_class_I_Rep_2 6 441.297119140625 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 67.876 1 71.384 70.884 71.884 3.5083 0 0 0 0.38417 1 15616 15616 0.50596 0 1 22310 4245 13941 13950 26537 26537 0.2169654445544893 LHRLRAWFL 9 Unmodified _LHRLRAWFL_ 0 0 0 MER21C_dup1957|chr6:35856027-35856548:+|1.3984925508944654|0.0513517285173974|4.77|151.0|31|2|anti-sense MER21C_dup1957|chr6:35856027-35856548:+|1.3984925508944654|0.0513517285173974|4.77|151.0|31|2|anti-sense MER21C_dup1957|chr6:35856027-35856548:+|1.3984925508944654|0.0513517285173974|4.77|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 606.3616943359375 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 45.186 1 45.186 44.686 45.686 0 0 0 0 0.40038 1 9164 9164 0.6015 0.076735 1 22311 15885 13942 13951 26538 26538 0.11180518724654576 LHRMRIINI 9 Unmodified _LHRMRIINI_ 0 0 0 Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|88|3|anti-sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|88|3|anti-sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|88|3|anti-sense MSMS UPN47_class_I_Rep_1 2 583.35302734375 2 583.35296 1164.69137 NaN NaN NaN NaN NaN NaN NaN 25.246 1 28.996 28.496 29.496 3.7495 0 0 0 0.4029 1 3433 3433 0 0 1 22312 33392 13943 13952 26539 26539 0.11560855127368086 LHRPPNVPR 9 Unmodified _LHRPPNVPR_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|6|1|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 543.3193969726562 2 543.319974 1084.6254 NaN NaN NaN NaN NaN NaN NaN 35.199 1 38.463 37.963 38.963 3.2639 0 0 0 0.38639 1 6491 6491 3.9444 0 1 + 22313 23701 13944 13953 26540 26540 0.08646782276787235 LHRRAALF 8 Unmodified _LHRRAALF_ 0 0 0 REV__ENST00000358697.5_1_X:57935647-57935794:-|nuORF REV__ENST00000358697.5_1_X:57935647-57935794:-|nuORF MSMS UPN48_class_I_Rep_1 5 492.29681396484375 2 492.29851 982.582468 NaN NaN NaN NaN NaN NaN NaN 41.791 1 45.299 44.799 45.799 3.5079 0 0 0 0.40581 1 7658 7658 2.8892 0 1 + 22314 21884 13945 13954 26541 26541 0.09048012219363955 LHRRIALKIL 10 Unmodified _LHRRIALKIL_ 0 0 0 nc|ENSG00000158296|Q8WWT9-2|SLC13A3;nc|ENSG00000158296|Q8WWT9-4|SLC13A3;nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3 nc|ENSG00000158296|Q8WWT9-2|SLC13A3 nc|ENSG00000158296|Q8WWT9-2|SLC13A3 MULTI-MSMS UPN47_class_I_Rep_1 2 616.9190063476562 2 616.919324 1231.8241 0.54349 0.00033529 -0.73852 -0.0004556 -0.19503 -0.00012032 616.91853151821 108.26 0.6877 111.9 111.47 112.15 3.6355 147 58 3 0 0 0 0.56309 1 26566 26566 1.6526 0 1 3818600 22315 3796 13946 13955 26542 26542 0.21745622855632973 LHRSQISLF 9 Unmodified _LHRSQISLF_ 0 0 0 REV__L1PA8_dup1944|chr4:67524247-67526350:+|1.804594434662148|0.0437644391608082|5.37|151.0|130|3|anti-sense REV__L1PA8_dup1944|chr4:67524247-67526350:+|1.804594434662148|0.0437644391608082|5.37|151.0|130|3|anti-sense MSMS UPN48_class_I_Rep_3 7 550.815673828125 2 550.81419 1099.61383 NaN NaN NaN NaN NaN NaN NaN 39.654 1 43.31 42.81 43.81 3.6557 0 0 0 0.38784 1 6961 6961 3.5965 0 1 + 22316 30208 13947 13956 26543 26543 0.06800540462813842 LHRSTKGV 8 Unmodified _LHRSTKGV_ 0 0 0 Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 449.2669677734375 2 449.266876 896.519199 0.18017 8.0946E-05 -0.24373 -0.0001095 -0.063561 -2.8556E-05 449.2667498134035 84.609 0.51369 84.609 84.377 84.89 0 104 44 3 0 0 0 0.82752 1 20142 20142 5.2307 0 1 435140 22317 435 13948 13957 26544 26544 0.06680026711478604 LHRSTKGV 8 Unmodified _LHRSTKGV_ 0 0 0 Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 449.266876 896.519199 0.18017 8.0946E-05 -0.24373 -0.0001095 -0.063561 -2.8556E-05 449.2667498134035 84.609 0.51369 84.609 84.377 84.89 0 0.06964 8.4028E-07 NaN 5.2307 104 44 3 NaN NaN NaN NaN 0 NaN NaN 0 435140 22318 435 13948 13957 0.06680026711478604 LHRSTKGV 8 Unmodified _LHRSTKGV_ 0 0 0 Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 449.266876 896.519199 0.1983 8.9088E-05 -0.32213 -0.00014472 -0.12383 -5.5634E-05 449.26652705498554 80.806 0.032013 84.47 84.449 84.481 3.6635 -0.06964 -6.96E-05 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 30181 22319 435 13948 13957 0.06680026711478604 LHSGGEEFTF 10 Unmodified _LHSGGEEFTF_ 0 0 0 REV__L1MA9_dup14793|chr17:66697277-66698692:+|2.0804609968695305|0.2110000474861185|3.3|150.0|89|3|anti-sense REV__L1MA9_dup14793|chr17:66697277-66698692:+|2.0804609968695305|0.2110000474861185|3.3|150.0|89|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.2568969726562 2 562.256371 1122.49819 0.44562 0.00025055 -0.13873 -7.8002E-05 0.30689 0.00017255 562.256235846283 50.23 1.1309 53.755 53.347 54.478 3.5246 179 72 4 0 0 0 0.54822 1 10123 10123 5.7319 0 1 851630 + 22320 25620 13949 13958 26545 26545 -0.058160281787195345 LHSIFYVDVL 10 Unmodified _LHSIFYVDVL_ 0 0 0 L1MC4a_dup9647|chr19:45862060-45862279:-|1.83654119549981|0.1655731015989622|3.47|151.0|18|2|anti-sense L1MC4a_dup9647|chr19:45862060-45862279:-|1.83654119549981|0.1655731015989622|3.47|151.0|18|2|anti-sense L1MC4a_dup9647|chr19:45862060-45862279:-|1.83654119549981|0.1655731015989622|3.47|151.0|18|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 603.811279296875 2 603.331882 1204.64921 0.51883 0.00031303 -0.27159 -0.00016386 0.24724 0.00014917 603.3315853632563 57.339 0.17097 60.63 60.531 60.702 3.2912 22 12 2 0 0 0 0.84575 1 13214 13214 10.074 1.3285 1 67912 22321 11637 13950 13959 26546 26546 0.05507158199952755 LHSKILWFA 9 Unmodified _LHSKILWFA_ 0 0 0 REV__L1PB1_dup2783|chr3:182893245-182894212:-|1.1736243327572695|0.1965316254943108|2.58|151.0|44|1|anti-sense REV__L1PB1_dup2783|chr3:182893245-182894212:-|1.1736243327572695|0.1965316254943108|2.58|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.822021484375 2 557.824027 1113.6335 NaN NaN NaN NaN NaN NaN NaN 42.06 1 45.74 45.24 46.24 3.6792 0 0 0 0.38478 1 8511 8511 4.3292 0 1 + 22322 30372 13951 13960 26547 26547 0.0812291647357597 LHSKKAKR 8 Unmodified _LHSKKAKR_ 0 0 0 Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|64|3|sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|64|3|sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|64|3|sense MSMS UPN47_class_I_Rep_2 3 484.311279296875 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 111.85 1 115.37 114.87 115.87 3.5226 0 0 0 0.40753 1 27239 27239 0.6015 0 1 22323 33186 13952 13961 26548 26548 0.12404281390843153 LHSKTRVS 8 Unmodified _LHSKTRVS_ 0 0 0 ENST00000592502.1_1_19:19792108-19792189:+|nuORF ENST00000592502.1_1_19:19792108-19792189:+|nuORF ENST00000592502.1_1_19:19792108-19792189:+|nuORF MSMS UPN48_class_I_Rep_3 7 464.2720642089844 2 464.272158 926.529764 NaN NaN NaN NaN NaN NaN NaN 107.47 1 111.15 110.65 111.65 3.6813 0 0 0 0.40625 1 25346 25346 2.3027 0 1 22324 7631 13953 13962 26549 26549 0.06356009365902082 LHSLAHGP 8 Unmodified _LHSLAHGP_ 0 0 0 MLT1D_dup6212|chr5:69316194-69316573:+|1.019291126511266|0.0984051519604373|3.37|151.0|19|1|anti-sense;MLT1D_dup2925|chr2:233091301-233091787:-|3.2108883666597543|0.0175438228382953|7.52|151.0|26|3|anti-sense;nc|ENSG00000175600|Q9HAC7-2|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT MLT1D_dup6212|chr5:69316194-69316573:+|1.019291126511266|0.0984051519604373|3.37|151.0|19|1|anti-sense MLT1D_dup6212|chr5:69316194-69316573:+|1.019291126511266|0.0984051519604373|3.37|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_1 5 416.22796630859375 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 88.886 1 92.509 92.009 93.009 3.6229 0 0 0 0.40738 1 21329 21329 0.79363 0 1 22325 16350 13954 13963 26550 26550 0.01788379757340408 LHSLAHGP 8 Unmodified _LHSLAHGP_ 0 0 0 MLT1D_dup6212|chr5:69316194-69316573:+|1.019291126511266|0.0984051519604373|3.37|151.0|19|1|anti-sense;MLT1D_dup2925|chr2:233091301-233091787:-|3.2108883666597543|0.0175438228382953|7.52|151.0|26|3|anti-sense;nc|ENSG00000175600|Q9HAC7-2|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT MLT1D_dup6212|chr5:69316194-69316573:+|1.019291126511266|0.0984051519604373|3.37|151.0|19|1|anti-sense MLT1D_dup6212|chr5:69316194-69316573:+|1.019291126511266|0.0984051519604373|3.37|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 416.2278747558594 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 62.435 1 65.945 65.445 66.445 3.5104 0 0 0 0.40738 1 13876 13876 0.79363 0 1 22326 16350 13954 13963 26551 26551 0.01788379757340408 LHSLARKL 8 Unmodified _LHSLARKL_ 0 0 0 REV__HAL1_dup2573|chr2:68183616-68184013:-|1.7008682190854336|0.2358762898797488|2.85|151.0|25|2|anti-sense REV__HAL1_dup2573|chr2:68183616-68184013:-|1.7008682190854336|0.2358762898797488|2.85|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_3 4 469.3009033203125 2 469.300719 936.586885 NaN NaN NaN NaN NaN NaN NaN 85.55 1 88.922 88.422 89.422 3.3716 0 0 0 0.40746 1 21432 21432 0.69038 0 1 + 22327 23411 13955 13964 26552 26552 0.11605476642284884 LHSLARKL 8 Unmodified _LHSLARKL_ 0 0 0 REV__HAL1_dup2573|chr2:68183616-68184013:-|1.7008682190854336|0.2358762898797488|2.85|151.0|25|2|anti-sense REV__HAL1_dup2573|chr2:68183616-68184013:-|1.7008682190854336|0.2358762898797488|2.85|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_2 6 469.3014831542969 2 469.300719 936.586885 NaN NaN NaN NaN NaN NaN NaN 85.204 1 88.91 88.41 89.41 3.7058 0 0 0 0.40746 1 20258 20258 0.69038 0 1 + 22328 23411 13955 13964 26553 26553 0.11605476642284884 LHSPDLASSCS 11 Unmodified _LHSPDLASSCS_ 0 0 0 REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|18|1|anti-sense REV__L1ME4b_dup1258|chr1:206050077-206050552:+|3.0724088492495043|0.0173842312300844|7.47|148.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 558.75390625 2 558.753138 1115.49172 NaN NaN NaN NaN NaN NaN NaN 67.197 1 67.197 66.697 67.697 0 0 0 0 0.38417 1 15283 15283 1.1933 0.39971 1 + 22329 28248 13956 13965 26554 26554 -0.061402894017419385 LHSTKKLGSL 10 Unmodified _LHSTKKLGSL_ 0 0 0 REV__ENST00000367800.8_1_6:135788741-135811786:-|nuORF REV__ENST00000367800.8_1_6:135788741-135811786:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 542.329345703125 2 542.329673 1082.64479 0.57901 0.00031401 0.070279 3.8114E-05 0.64929 0.00035213 542.3295156465063 57.979 0.39377 61.493 61.321 61.715 3.5142 42 24 3 0 0 0 0.41718 1 12600 12600 18.146 1.0335 1 361610 + 22330 21933 13957 13966 26555 26555 0.10677693777029162 LHSTKKLGSL 10 Unmodified _LHSTKKLGSL_ 0 0 0 REV__ENST00000367800.8_1_6:135788741-135811786:-|nuORF REV__ENST00000367800.8_1_6:135788741-135811786:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 542.3299560546875 2 542.329673 1082.64479 0.45566 0.00024712 0.072038 3.9069E-05 0.52769 0.00028618 542.3296140242747 57.904 0.88599 61.436 61.15 62.036 3.5317 112 60 2 0 0 0 0.41718 1 12460 12460 18.146 1.0335 1 670670 + 22331 21933 13957 13966 26556 26556 0.10677693777029162 LHSYPYKGHE 10 Unmodified _LHSYPYKGHE_ 0 0 0 L1PA5_dup5568|chr8:47453776-47454645:+|1.9863633753185792|0.0244204640921591|6.35|151.0|40|2|anti-sense L1PA5_dup5568|chr8:47453776-47454645:+|1.9863633753185792|0.0244204640921591|6.35|151.0|40|2|anti-sense L1PA5_dup5568|chr8:47453776-47454645:+|1.9863633753185792|0.0244204640921591|6.35|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 615.7982177734375 2 615.798737 1229.58292 0.44316 0.0002729 -1.012 -0.00062317 -0.5688 -0.00035027 615.7977701512476 62.359 0.3808 65.618 65.341 65.722 3.2594 32 25 2 0 0 0 0.56078 1 14669 14669 3.2813 0 1 122170 22332 14497 13958 13967 26557 26557 -0.02268657642071048 LHTCIVLLL 9 Unmodified _LHTCIVLLL_ 0 0 0 REV__ENST00000391440.2_1_X:134155474-134155804:-|nuORF REV__ENST00000391440.2_1_X:134155474-134155804:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 512.3135375976562 2 512.814813 1023.61507 0.18876 9.6801E-05 -0.45762 -0.00023468 -0.26886 -0.00013787 512.8144203266557 53.888 0.32862 57.416 57.32 57.648 3.5278 26 18 2 0 0 0 0.12182 1 12138 12138 5.2307 0 1 57269 + 22333 22081 13959 13968 26558 26558 0.10421038507342928 LHTERLLK 8 Unmodified _LHTERLLK_ 0 0 0 ENST00000420353.6_1_12:53907497-53907599:-|nuORF ENST00000420353.6_1_12:53907497-53907599:-|nuORF ENST00000420353.6_1_12:53907497-53907599:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 505.3114013671875 2 505.311284 1008.60801 0.056246 2.8422E-05 -0.083579 -4.2233E-05 -0.027333 -1.3812E-05 505.31120092444644 45.591 1.1195 48.835 48.347 49.467 3.2441 133 66 3 0 0 0 0.82752 1 9718 9718 9.3474 0 1 264540 22334 6677 13960 13969 26559 26559 0.10405441951127159 LHTFGLYF 8 Unmodified _LHTFGLYF_ 0 0 0 REV__L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|54|1|anti-sense REV__L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.26019287109375 2 499.260728 996.506903 -0.16977 -8.4762E-05 -0.57971 -0.00028943 -0.74949 -0.00037419 499.2604691379319 28.115 0.79572 31.614 31.038 31.834 3.4986 97 64 2 0 0 0 0.82752 1 4224 4224 5.7604 0 1 68159 + 22335 27330 13961 13970 26560 26560 0.008509902484206577 LHTFPPGLV 9 Unmodified _LHTFPPGLV_ 0 0 0 REV__ENSG00000162408|ENST00000377705|NOL9 REV__ENSG00000162408|ENST00000377705|NOL9 MSMS UPN48_class_I_Rep_3 7 490.78094482421875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.08 115.58 116.58 3.6614 0 0 0 0.39428 1 26711 26711 2.0598 0 1 + 22336 19923 13962 13971 26561 26561 0.05850965656804874 LHTLLNSLI 9 Unmodified _LHTLLNSLI_ 0 0 0 REV__L1MC4_dup21333|chr17:2642618-2643078:-|2.3410016385722847|0.142326966780166|4.04|151.0|5|1|sense REV__L1MC4_dup21333|chr17:2642618-2643078:-|2.3410016385722847|0.142326966780166|4.04|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.3134765625 2 512.313492 1022.61243 0.19122 9.7965E-05 -0.57575 -0.00029496 -0.38453 -0.000197 512.3133528390848 53.999 1.0754 57.318 56.934 58.01 3.3187 84 60 2 0 0 0 0.42249 2 12259 12259;12310 6.7232 0 1 153210 + 22337 26872 13963 13972 26562;26563 26562 0.10202906374036047 LHTLLPVWIH 10 Unmodified _LHTLLPVWIH_ 0 0 0 REV__nc|ENSG00000163357|Q5T197-2|DCST1 REV__nc|ENSG00000163357|Q5T197-2|DCST1 MSMS UPN46_class_I_Rep_3 1 614.8634033203125 2 614.863683 1227.71281 NaN NaN NaN NaN NaN NaN NaN 78.264 1 78.264 77.764 78.764 0 0 0 0 0.53105 1 18324 18324 1.6526 0 1 + 22338 32035 13964 13973 26564 26564 0.10806563427695437 LHTLLQLYDI 10 Unmodified _LHTLLQLYDI_ 0 0 0 L1MC1_dup2534|chr3:108542193-108542560:-|1.1888537662313383|0.1901916437401919|2.64|151.0|10|2|sense L1MC1_dup2534|chr3:108542193-108542560:-|1.1888537662313383|0.1901916437401919|2.64|151.0|10|2|sense L1MC1_dup2534|chr3:108542193-108542560:-|1.1888537662313383|0.1901916437401919|2.64|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 614.8507080078125 2 614.850438 1227.68632 NaN NaN NaN NaN NaN NaN NaN 75.067 1 78.461 77.961 78.961 3.3937 0 0 0 0.53105 1 18508 18508 1.6526 0 1 22339 11126 13965 13974 26565 26565 0.08158829745730145 LHTLVINR 8 Unmodified _LHTLVINR_ 0 0 0 REV__nc|ENSG00000152582|Q9C093-4|SPEF2 REV__nc|ENSG00000152582|Q9C093-4|SPEF2 MSMS UPN48_class_I_Rep_3 7 483.29779052734375 2 483.298176 964.581799 NaN NaN NaN NaN NaN NaN NaN 57.545 1 61.076 60.576 61.576 3.5317 0 0 0 0.36705 1 12388 12388 18.135 4.6271 1 + 22340 32016 13966 13975 26566 26566 0.09809172779660003 LHTLVLRI 8 Unmodified _LHTLVLRI_ 0 0 0 REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|121|2|anti-sense REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|121|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 482.81890869140625 2 482.818744 963.622936 0.2376 0.00011472 -0.13911 -6.7163E-05 0.098499 4.7557E-05 482.8186238132974 57.849 0.77672 61.343 60.983 61.759 3.4942 91 55 2 0 0 0 0.82752 1 12655 12655 46.021 0 1 212840 + 22341 23520 13967 13976 26567 26567 0.139669338191311 LHTLVLRI 8 Unmodified _LHTLVLRI_ 0 0 0 REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|121|2|anti-sense REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.02189231345965|0.289692074971568|1.82|151.0|121|2|anti-sense MSMS UPN48_class_I_Rep_3 7 482.81878662109375 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 57.422 1 60.954 60.454 61.454 3.5317 0 0 0 0.15671 1 12350 12350 47.749 0 1 + 22342 23520 13967 13976 26568 26568 0.139669338191311 LHTMQGKLIML 11 Unmodified _LHTMQGKLIML_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP UPN47_class_I_Rep_1 2 642.36181640625 2 642.861969 1283.70938 0.58045 0.00037315 -0.80967 -0.00052051 -0.22922 -0.00014736 642.8618202650307 104.27 0.29276 108.03 107.89 108.18 3.7627 86 47 3 0 0 0 22.551 1 25637 25637 5.2969 0.39987 1 47025000 + 22343 18023 13968 13977 26569 26569 0.0788780926718573 LHTMQGKLIML 11 Unmodified _LHTMQGKLIML_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS UPN47_class_I_Rep_2 3 643.8656616210938 2 642.861969 1283.70938 0.63467 0.00040801 -0.22378 -0.00014386 0.41089 0.00026415 643.362819682465 104.29 0.17266 107.82 107.77 107.94 3.5289 59 27 3 0 0 0 0.4608 1 25323 25323 8.7454 5.7502 1 42144000 + 22344 18023 13968 13977 26570 26570 0.0788780926718573 LHTMQGKLIML 11 Unmodified _LHTMQGKLIML_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP UPN47_class_I_Rep_2 3 642.3621826171875 2 642.861969 1283.70938 0.6348 0.00040809 -0.98832 -0.00063535 -0.35351 -0.00022726 643.3627120738669 104.16 0.20388 107.69 107.56 107.77 3.5289 79 32 4 0 0 0 22.551 1 25302 25302 5.2969 0.39987 1 44453000 + 22345 18023 13968 13977 26571 26571 0.0788780926718573 LHTMQGKLIML 11 Unmodified _LHTMQGKLIML_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP UPN47_class_I_Rep_3 4 642.362548828125 2 642.861969 1283.70938 0.51489 0.000331 -0.91608 -0.00058891 -0.40119 -0.00025791 643.3622662115231 106.42 0.27059 109.96 109.88 110.15 3.5367 53 40 2 0 0 0 22.551 1 26046 26046 5.2969 2.3016 1 234600 + 22346 18023 13968 13977 26572 26572 0.0788780926718573 LHTMQGKLIML 11 Unmodified _LHTMQGKLIML_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP UPN48_class_I_Rep_3 7 642.3612670898438 2 642.861969 1283.70938 0.63996 0.00041141 -0.87146 -0.00056023 -0.23149 -0.00014882 642.8618522533412 105.93 0.27278 109.63 109.57 109.84 3.702 51 39 2 0 0 0 22.551 1 24997 24997 5.2969 2.3016 1 187460 + 22347 18023 13968 13977 26573 26573 0.0788780926718573 LHTPKKWTL 9 Unmodified _LHTPKKWTL_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.44459 0.00025001 0.020517 1.1537E-05 0.4651 0.00026154 562.3347176289997 108.83 0.70623 108.83 108.69 109.4 0 91 52 2 0 0 0 0.32682 1 26673 26673 12.241 3.4953 1 38941000 + 22348 31236 13969 13978 26574 26574 0.09854301502286944 LHTPKKWTL 9 Unmodified _LHTPKKWTL_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.3335571289062 2 562.334759 1122.65496 0.50588 0.00028447 0.69853 0.00039281 1.2044 0.00067728 562.3345050649632 108.66 0.44942 112.29 112.17 112.62 3.6355 162 46 4 0 0 0 0.32682 1 26840 26840 12.241 3.4953 1 137640000 + 22349 31236 13969 13978 26575 26575 0.09854301502286944 LHTPKKWTL 9 Unmodified _LHTPKKWTL_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3348388671875 2 562.334759 1122.65496 0.50418 0.00028352 0.80527 0.00045283 1.3095 0.00073635 562.3345812860092 108.67 0.68864 112.21 112.09 112.78 3.5382 284 80 4 0 0 0 0.31407 2 26623 26623;26673 13.042 6.3193 1 114320000 + 22350 31236 13969 13978 26576;26577 26576 0.09854301502286944 LHTPKKWTL 9 Unmodified _LHTPKKWTL_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.8433837890625 2 562.334759 1122.65496 0.49267 0.00027704 0.74314 0.0004179 1.2358 0.00069494 562.3344148974894 109.96 0.30602 113.63 113.57 113.88 3.6715 53 38 3 0 0 0 0.46869 1 26177 26177 3.9444 0.66309 1 159340 + 22351 31236 13969 13978 26578 26578 0.09854301502286944 LHTPKKWTL 9 Unmodified _LHTPKKWTL_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 562.334759 1122.65496 0.42868 0.00024106 0.61859 0.00034785 1.0473 0.00058891 562.3343702615009 110.01 0.18951 113.68 113.58 113.77 3.67 0.064101 0.00021023 NaN 3.9444 43 25 3 NaN NaN NaN NaN 0 NaN NaN 0 168540 + 22352 31236 13969 13978 0.09854301502286944 LHTSDLHLF 9 Unmodified _LHTSDLHLF_ 0 0 0 ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 542.3298950195312 2 541.785099 1081.55564 0.50377 0.00027294 -0.27031 -0.00014645 0.23347 0.00012649 541.784583168126 57.884 0.062382 61.379 61.345 61.408 3.4942 5 3 2 0 0 0 0.11598 1 12587 12587 11.64 2.2929 1 56944 22353 7040 13970 13979 26579 26579 0.018128588175159166 LHTSDLHLF 9 Unmodified _LHTSDLHLF_ 0 0 0 ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 542.2874145507812 2 541.785099 1081.55564 0.58106 0.00031481 -0.44592 -0.00024159 0.13514 7.3214E-05 541.7848202261086 57.626 0.34225 61.14 61.048 61.39 3.5142 39 26 2 0 0 0 0.33654 1 12542 12542 11.64 1.5664 1 131610 22354 7040 13970 13979 26580 26580 0.018128588175159166 LHTSDLHLF 9 Unmodified _LHTSDLHLF_ 0 0 0 ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF ENST00000486734.5_1_2:220072724-220073377:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 542.3299560546875 2 541.785099 1081.55564 0.46018 0.00024932 -1.4095 -0.00076363 -0.94929 -0.00051431 541.7843526900949 57.83 0.12019 61.361 61.282 61.402 3.5317 10 7 2 0 0 0 0.11598 1 12460 12460 11.64 2.2929 1 35331 22355 7040 13970 13979 26581 26581 0.018128588175159166 LHTSQKLKP 9 Unmodified _LHTSQKLKP_ 0 0 0 REV__AluJb_dup1734|chr1:21158170-21158475:-|1.2076706678510487|0.0119280124396376|6.66|151.0|13|1|anti-sense REV__AluJb_dup1734|chr1:21158170-21158475:-|1.2076706678510487|0.0119280124396376|6.66|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_3 7 526.3349609375 2 526.316566 1050.61858 NaN NaN NaN NaN NaN NaN NaN 58.233 1 61.765 61.265 62.265 3.5317 0 0 0 0.34056 1 12600 12600 8.5933 0.68312 1 + 22356 16929 13971 13980 26582 26582 0.09529424605557324 LHTSVLAVAL 10 Unmodified _LHTSVLAVAL_ 0 0 0 REV__ENST00000438676.1_1_6:75994738-75994903:+|nuORF REV__ENST00000438676.1_1_6:75994738-75994903:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.313720703125 2 512.313492 1022.61243 0.18281 9.3658E-05 -0.29248 -0.00014984 -0.10966 -5.6181E-05 512.3134060671982 53.746 0.93441 57.273 56.861 57.795 3.5278 76 55 2 0 0 0 0.56033 1 12201 12201 3.5965 0 1 161010 + 22357 22318 13972 13981 26583 26583 0.10202906374036047 LHTSVLAVAL 10 Unmodified _LHTSVLAVAL_ 0 0 0 REV__ENST00000438676.1_1_6:75994738-75994903:+|nuORF REV__ENST00000438676.1_1_6:75994738-75994903:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 512.3140869140625 2 512.313492 1022.61243 0.28589 0.00014647 -0.81444 -0.00041725 -0.52855 -0.00027078 512.3131921843761 54.209 0.91269 57.394 56.996 57.909 3.1856 91 57 2 0 0 0 0.56033 1 12235 12235 3.5965 0 1 125400 + 22358 22318 13972 13981 26584 26584 0.10202906374036047 LHTSYLLESFR 11 Unmodified _LHTSYLLESFR_ 0 0 0 REV__L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|68|2|anti-sense REV__L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|68|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 456.28448486328125 3 455.910227 1364.70885 0.026323 1.2001E-05 -0.040973 -1.868E-05 -0.014649 -6.6788E-06 455.91028548373833 99.963 0.025589 103.57 103.56 103.58 3.6084 4 2 2 0 0 0 22.551 1 24140 24140 1.1098 0.33322 1 42408 + 22359 28629 13973 13982 26585 26585 0.041084291432980535 LHVCCFFFI 9 Unmodified _LHVCCFFFI_ 0 0 0 L1MEb_dup1596|chr18:21689575-21690323:+|1.1446298643957|0.021909821669808|5.71|151.0|40|2|anti-sense L1MEb_dup1596|chr18:21689575-21690323:+|1.1446298643957|0.021909821669808|5.71|151.0|40|2|anti-sense L1MEb_dup1596|chr18:21689575-21690323:+|1.1446298643957|0.021909821669808|5.71|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.769775390625 2 564.772091 1127.52963 NaN NaN NaN NaN NaN NaN NaN 35.253 1 38.678 38.178 39.178 3.4253 0 0 0 0.39326 1 6476 6476 2.3027 0.4585 1 22360 12984 13974 13983 26586 26586 -0.02903449949963033 LHVFRLGQ 8 Unmodified _LHVFRLGQ_ 0 0 0 REV__ENSG00000139044|ENST00000266383|B4GALNT3 REV__ENSG00000139044|ENST00000266383|B4GALNT3 MSMS UPN47_class_I_Rep_3 4 485.2356262207031 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 23.759 1 27.11 26.61 27.61 3.3509 0 0 0 0.40738 1 3077 3077 0.79363 0 1 + 22361 19300 13975 13984 26587 26587 0.07004903608196855 LHVGWLCDL 9 Unmodified _LHVGWLCDL_ 0 0 0 MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|13|3|sense MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|13|3|sense MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.2698974609375 2 528.27077 1054.52699 -0.21923 -0.00011581 -0.86436 -0.00045661 -1.0836 -0.00057243 528.270362367336 12.92 0.19151 16.308 16.242 16.433 3.388 29 18 3 0 0 0 0.48846 1 182 182 1.8442 0.36234 1 60946 22362 16411 13976 13985 26588 26588 0.0019041791672407271 LHVGWLCDL 9 Unmodified _LHVGWLCDL_ 0 0 0 MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|13|3|sense MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|13|3|sense MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|13|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 528.27077 1054.52699 -0.51586 -0.00027251 -0.39907 -0.00021081 -0.91492 -0.00048333 528.2704352580173 12.935 0.20049 16.308 16.229 16.429 3.3734 -0.01156 0.00012796 NaN 1.8442 40 23 3 NaN NaN NaN NaN 0 NaN NaN 0 61588 22363 16411 13976 13985 0.0019041791672407271 LHVKKKKA 8 Unmodified _LHVKKKKA_ 0 0 0 nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP nc|ENSG00000197893|Q86VF7-4|NRAP nc|ENSG00000197893|Q86VF7-4|NRAP MULTI-MSMS UPN46_class_I_Rep_3 1 476.3263244628906 2 476.326737 950.63892 -0.08964 -4.2698E-05 -0.38991 -0.00018572 -0.47955 -0.00022842 476.3263730669294 26.13 0.097965 26.13 26.114 26.212 0 8 4 3 0 0 0 0.82752 1 3699 3699 2.8892 0 1 289080 22364 5394 13977 13986 26589 26589 0.161626400560408 LHVKKKKA 8 Unmodified _LHVKKKKA_ 0 0 0 nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP nc|ENSG00000197893|Q86VF7-4|NRAP nc|ENSG00000197893|Q86VF7-4|NRAP MSMS UPN46_class_I_Rep_3 1 476.326416015625 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 26.7 1 26.7 26.2 27.2 0 0 0 0 0.40738 1 3857 3857 0.79363 0 1 22365 5394 13977 13986 26590 26590 0.161626400560408 LHVLYVYF 8 Unmodified _LHVLYVYF_ 0 0 0 L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|63|3|anti-sense L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|63|3|anti-sense L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|63|3|anti-sense MSMS UPN46_class_I_Rep_3 1 526.822021484375 2 527.292028 1052.5695 NaN NaN NaN NaN NaN NaN NaN 45.408 1 45.408 44.908 45.908 0 0 0 0 0.4032 1 9231 9231 6.3541 0 1 22366 12525 13978 13987 26591 26591 0.04532136316629476 LHVMFVRFIL 10 Unmodified _LHVMFVRFIL_ 0 0 0 L1ME3_dup8981|chr21:42533958-42534487:-|1.3426813794708492|0.1985478405411226|2.76|151.0|20|1|anti-sense L1ME3_dup8981|chr21:42533958-42534487:-|1.3426813794708492|0.1985478405411226|2.76|151.0|20|1|anti-sense L1ME3_dup8981|chr21:42533958-42534487:-|1.3426813794708492|0.1985478405411226|2.76|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_3 7 637.8742065429688 2 637.875736 1273.73692 NaN NaN NaN NaN NaN NaN NaN 102.83 1 106.6 106.1 107.1 3.776 0 0 0 0.53105 1 24297 24297 1.4819 0.15237 1 22367 12615 13979 13988 26592 26592 0.11100080589721983 LHVRFIYFC 9 Unmodified _LHVRFIYFC_ 0 0 0 L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|89|2|anti-sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|89|2|anti-sense L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|89|2|anti-sense MSMS UPN47_class_I_Rep_2 3 599.317138671875 2 599.315512 1196.61647 NaN NaN NaN NaN NaN NaN NaN 45.338 1 48.692 48.192 49.192 3.3534 0 0 0 0.39326 1 9544 9544 2.3027 0.4585 1 22368 9330 13980 13989 26593 26593 0.026026725961173724 LHVSMNKHRK 10 Unmodified _LHVSMNKHRK_ 0 0 0 REV__ENSG00000142534|ENST00000270625|RPS11 REV__ENSG00000142534|ENST00000270625|RPS11 MSMS UPN48_class_I_Rep_2 6 625.3528442382812 2 625.350948 1248.68734 NaN NaN NaN NaN NaN NaN NaN 66.1 1 69.587 69.087 70.087 3.4866 0 0 0 0.53105 1 15076 15076 1.4819 0 1 + 22369 19406 13981 13990 26594 26594 0.07294765633628231 LHVTFAERME 10 Unmodified _LHVTFAERME_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MSMS UPN48_class_I_Rep_2 6 616.8084716796875 2 616.808248 1231.60194 NaN NaN NaN NaN NaN NaN NaN 37.523 1 41.225 40.725 41.725 3.7021 0 0 0 0.53105 1 6431 6431 1.6526 0 1 + 22370 19642 13982 13991 26595 26595 -0.004594443426867656 LHVTVTRLPPL 11 Unmodified _LHVTVTRLPPL_ 0 0 0 REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS UPN48_class_I_Rep_3 7 623.3878784179688 2 623.387522 1244.76049 0.59275 0.00036951 0.30476 0.00018998 0.8975 0.00055949 623.3876056476042 108.66 0.48726 112.34 112.26 112.75 3.6751 117 53 3 0 0 0 0.48412 1 25765 25765 8.1555 0 1 22689000 + 22371 19205 13983 13992 26596 26596 0.14790217627887614 LHWAAKSG 8 Unmodified _LHWAAKSG_ 0 0 0 ENSG00000198944|ENST00000378693|SOWAHA ENSG00000198944|ENST00000378693|SOWAHA ENSG00000198944|ENST00000378693|SOWAHA MSMS UPN47_class_I_Rep_2 3 435.2332763671875 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 28.616 1 32.115 31.615 32.615 3.4986 0 0 0 0.40738 1 4465 4465 0.79363 0 1 22372 5491 13984 13993 26597 26597 0.01604666274374722 LHWATWLE 8 Unmodified _LHWATWLE_ 0 0 0 ENST00000509448.5_1_7:135347283-135373658:+|nuORF;ENST00000507606.2_1_7:135347283-135358947:+|nuORF ENST00000509448.5_1_7:135347283-135373658:+|nuORF ENST00000509448.5_1_7:135347283-135373658:+|nuORF MSMS UPN46_class_I_Rep_3 1 528.26904296875 2 528.269084 1054.52362 NaN NaN NaN NaN NaN NaN NaN 89.011 1 89.011 88.511 89.511 0 0 0 0 0.40738 1 21399 21399 0.79363 0 1 22373 7162 13985 13994 26598 26598 -0.0014650886564595567 LHWFWFLR 8 Unmodified _LHWFWFLR_ 0 0 0 L1MC4_dup5487|chr3:167680113-167680805:+|1.0151658880547338|0.1242292140258925|3.03|151.0|35|1|anti-sense L1MC4_dup5487|chr3:167680113-167680805:+|1.0151658880547338|0.1242292140258925|3.03|151.0|35|1|anti-sense L1MC4_dup5487|chr3:167680113-167680805:+|1.0151658880547338|0.1242292140258925|3.03|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 602.8242797851562 2 602.824361 1203.63417 NaN NaN NaN NaN NaN NaN NaN 110.63 1 114.26 113.76 114.76 3.6326 0 0 0 0.40738 1 26851 26851 0.79363 0.19213 1 22374 11508 13986 13995 26599 26599 0.04049755913251829 LHWGSWTRR 9 Unmodified _LHWGSWTRR_ 0 0 0 REV__MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|14|2|sense REV__MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 599.81787109375 2 599.815056 1197.61556 0.52585 0.00031542 2.4521 0.0014708 2.978 0.0017862 599.816937908697 64.699 0.081345 68.153 68.12 68.201 3.4541 8 5 2 0 0 0 0.49026 1 14668 14668 1.6526 0.17072 1 61648 + 22375 31700 13987 13996 26600 26600 0.024655942713934564 LHWGSWTRR 9 Unmodified _LHWGSWTRR_ 0 0 0 REV__MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|14|2|sense REV__MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|14|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 599.815056 1197.61556 0.52585 0.00031542 2.4521 0.0014708 2.978 0.0017862 599.816937908697 64.699 0.081345 68.153 68.12 68.201 3.4541 0 0 NaN 1.6526 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 61648 + 22376 31700 13987 13996 0.024655942713934564 LHWHAVPY 8 Unmodified _LHWHAVPY_ 0 0 0 REV__ENSG00000135763|ENST00000258243|URB2 REV__ENSG00000135763|ENST00000258243|URB2 MULTI-SECPEP UPN47_class_I_Rep_2 3 511.2871398925781 2 511.763969 1021.51339 0.17643 9.0293E-05 1.0744 0.00054984 1.2508 0.00064013 511.7642781848977 59.88 0.26936 63.154 63.036 63.306 3.2731 15 13 2 0 0 0 0.72333 1 13942 13942 11.114 1.767 1 54984 + 22377 19154 13988 13997 26601 26601 0.003489281997985927 LHWICTMLWA 10 Unmodified _LHWICTMLWA_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|214|3|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|214|3|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|214|3|anti-sense MSMS UPN48_class_I_Rep_1 5 637.3153686523438 2 637.314654 1272.61476 NaN NaN NaN NaN NaN NaN NaN 38.929 1 42.434 41.934 42.934 3.5048 0 0 0 0.53105 1 6809 6809 1.4819 0 1 22378 15304 13989 13998 26602 26602 -0.010647044841562092 LHWKDIKAKTA 11 Unmodified _LHWKDIKAKTA_ 0 0 0 REV__L1PA5_dup5927|chr8:120638406-120641024:-|3.561568471199229|0.0980385469980961|5.18|151.0|65|3|sense REV__L1PA5_dup5927|chr8:120638406-120641024:-|3.561568471199229|0.0980385469980961|5.18|151.0|65|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 437.5915222167969 3 437.590828 1309.75066 0.15298 6.6941E-05 1.826 0.00079904 1.979 0.00086598 437.5915895408834 93.877 0.063774 93.877 93.84 93.903 0 9 5 2 0 0 0 0.65674 1 22767 22767 2.6312 0.88896 1 131420 + 22379 29624 13990 13999 26603 26603 0.10817029622512564 LHWLFYCEQ 9 Unmodified _LHWLFYCEQ_ 0 0 0 ENST00000460277.5_1_1:145765021-145811987:-|nuORF ENST00000460277.5_1_1:145765021-145811987:-|nuORF ENST00000460277.5_1_1:145765021-145811987:-|nuORF MSMS UPN47_class_I_Rep_1 2 619.787841796875 2 619.786784 1237.55902 NaN NaN NaN NaN NaN NaN NaN 66.56 1 69.918 69.418 70.418 3.3576 0 0 0 0.39518 1 15952 15952 1.8442 0 1 22380 6852 13991 14000 26604 26604 -0.05026214400140816 LHWNSVLLC 9 Unmodified _LHWNSVLLC_ 0 0 0 L1M1_dup1697|chr3:113683767-113686457:-|4.016915444395624|0.07019195904901|5.84|151.0|30|2|sense L1M1_dup1697|chr3:113683767-113686457:-|4.016915444395624|0.07019195904901|5.84|151.0|30|2|sense L1M1_dup1697|chr3:113683767-113686457:-|4.016915444395624|0.07019195904901|5.84|151.0|30|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 542.2828979492188 2 542.784044 1083.55354 0.40926 0.00022214 0.88034 0.00047783 1.2896 0.00069998 543.284929882273 44.452 0.068924 47.965 47.915 47.984 3.5132 6 4 2 0 0 0 0.12444 1 8461 8461 2.0598 0 1 105760 22381 8494 13992 14001 26605 26605 0.01510106808063938 LHWRLPLG 8 Unmodified _LHWRLPLG_ 0 0 0 REV__LTR12C_dup306|chr2:168656339-168658003:-|1.4165933692796164|0.0257646492410882|5.78|151.0|16|2|sense REV__LTR12C_dup306|chr2:168656339-168658003:-|1.4165933692796164|0.0257646492410882|5.78|151.0|16|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29559326171875 2 496.295436 990.57632 0.012749 6.3273E-06 0.45273 0.00022469 0.46548 0.00023102 496.2955723569236 28.497 0.081989 28.497 28.481 28.563 0 9 4 3 0 0 0 0.82752 1 4390 4390 2.5775 0 1 2297100 + 22382 30818 13993 14002 26606 26606 0.08065493987862737 LHWVIRMV 8 Unmodified _LHWVIRMV_ 0 0 0 REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|24|3|anti-sense REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|24|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.30615234375 2 527.304947 1052.59534 0.41337 0.00021797 0.23741 0.00012519 0.65078 0.00034316 527.3050263039181 90.383 0.51979 93.78 93.481 94 3.3976 96 68 2 0 0 0 0.82752 1 22644 22644 0.79363 0 1 135940 + 22383 30965 13994 14003 26607 26607 0.07114707287246347 LHWVRICS 8 Unmodified _LHWVRICS_ 0 0 0 L1PA7_dup2384|chr3:101735396-101739625:+|3.0791717805806265|0.0454275004220466|6.08|151.0|230|3|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|258|2|anti-sense;L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|213|3|anti-sense L1PA7_dup2384|chr3:101735396-101739625:+|3.0791717805806265|0.0454275004220466|6.08|151.0|230|3|anti-sense L1PA7_dup2384|chr3:101735396-101739625:+|3.0791717805806265|0.0454275004220466|6.08|151.0|230|3|anti-sense MSMS UPN46_class_I_Rep_3 1 507.04132080078125 2 507.271104 1012.52766 NaN NaN NaN NaN NaN NaN NaN 66.501 1 66.501 66.001 67.001 0 0 0 0 0.40738 1 15092 15092 0.79363 0 1 22384 14783 13995 14004 26608 26608 0.021892573564400664 LHWYIWTF 8 Unmodified _LHWYIWTF_ 0 0 0 HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|51|2|anti-sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|51|2|anti-sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.2965698242188 2 583.295102 1164.57565 -0.0132 -7.6997E-06 2.2434 0.0013086 2.2302 0.0013009 583.2963704711595 41.267 0.13174 44.939 44.863 44.995 3.6719 12 8 2 0 0 0 0.82752 1 8270 8270 5.2307 0.7018 1 48990 22385 7939 13996 14005 26609 26609 -5.3454518820217345E-05 LHWYIWTF 8 Unmodified _LHWYIWTF_ 0 0 0 HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|51|2|anti-sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|51|2|anti-sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_2 3 583.2957763671875 2 583.295102 1164.57565 NaN NaN NaN NaN NaN NaN NaN 41.761 1 45.127 44.627 45.627 3.3655 0 0 0 0.40404 1 8448 8448 5.2307 0.90143 1 22386 7939 13996 14005 26610 26610 -5.3454518820217345E-05 LHYFLLKY 8 Unmodified _LHYFLLKY_ 0 0 0 ENST00000492313.1_1_6:46133055-46135279:-|nuORF ENST00000492313.1_1_6:46133055-46135279:-|nuORF ENST00000492313.1_1_6:46133055-46135279:-|nuORF MSMS UPN48_class_I_Rep_3 7 548.811279296875 2 548.813128 1095.6117 NaN NaN NaN NaN NaN NaN NaN 45.341 1 48.978 48.478 49.478 3.6369 0 0 0 0.40364 1 8671 8671 5.7604 1.0044 1 22387 7076 13997 14006 26611 26611 0.06772111724990282 LHYFSMLLFP 10 Unmodified _LHYFSMLLFP_ 0 0 0 REV__HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|85|2|anti-sense REV__HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|85|2|anti-sense MSMS UPN46_class_I_Rep_3 1 634.3287963867188 2 634.330827 1266.6471 NaN NaN NaN NaN NaN NaN NaN 61.287 1 61.287 60.787 61.787 0 0 0 0 0.53105 1 13629 13629 1.8442 0.19162 1 + 22388 23550 13998 14007 26612 26612 0.02444406190488735 LHYIRKHR 8 Unmodified _LHYIRKHR_ 0 0 0 REV__L1ME1_dup27745|chr17:61184255-61185117:+|1.4403741096769374|0.0163045294296196|6.47|151.0|19|2|sense REV__L1ME1_dup27745|chr17:61184255-61185117:+|1.4403741096769374|0.0163045294296196|6.47|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 561.8359375 2 561.835791 1121.65703 NaN NaN NaN NaN NaN NaN NaN 57.558 1 61.09 60.59 61.59 3.5317 0 0 0 0.40738 1 12392 12392 0.79363 0 1 + 22389 27720 13999 14008 26613 26613 0.10106775030749304 LHYLELHK 8 Unmodified _LHYLELHK_ 0 0 0 REV__Tigger1_dup5169|chr6:119234761-119235855:+|1.3931332462293355|0.0261052394320163|5.74|151.0|65|3|anti-sense REV__Tigger1_dup5169|chr6:119234761-119235855:+|1.3931332462293355|0.0261052394320163|5.74|151.0|65|3|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7971801757812 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 22.443 1 26.086 25.586 26.586 3.6432 0 0 0 0.40738 1 2293 2293 0.79363 0 1 + 22390 32462 14000 14009 26614 26614 0.05773753059793307 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 544.8253173828125 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.26 1 92.934 92.434 93.434 3.6738 0 0 0 0.40738 1 22316 22316 0.79363 0 1 + 22391 25258 14001 14010 26615 26615 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 544.8252563476562 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.388 1 93.062 92.562 93.562 3.6738 0 0 0 0.40738 1 22351 22351 0.79363 0 1 + 22392 25258 14001 14010 26616 26616 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 544.8245239257812 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 88.204 1 91.827 91.327 92.327 3.6229 0 0 0 0.40738 1 21158 21158 0.79363 0 1 + 22393 25258 14001 14010 26617 26617 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 544.8236083984375 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 88.619 1 92.241 91.741 92.741 3.6229 0 0 0 0.40738 1 21263 21263 0.79363 0 1 + 22394 25258 14001 14010 26618 26618 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 544.8251953125 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 88.789 1 92.412 91.912 92.912 3.6229 0 0 0 0.40738 1 21305 21305 0.79363 0 1 + 22395 25258 14001 14010 26619 26619 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 544.8248291015625 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.045 1 92.668 92.168 93.168 3.6229 0 0 0 0.40738 1 21370 21370 0.79363 0 1 + 22396 25258 14001 14010 26620 26620 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 544.8248291015625 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 88.089 1 91.899 91.399 92.399 3.8104 0 0 0 0.40738 1 20907 20907 0.79363 0 1 + 22397 25258 14001 14010 26621 26621 0.09214378833007686 LHYLKMRK 8 Unmodified _LHYLKMRK_ 0 0 0 REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense REV__L1MA4A_dup2926|chr8:42024320-42025203:-|1.7236013421217269|0.0156003991268598|6.79|150.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 544.8250732421875 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 88.408 1 92.218 91.718 92.718 3.8104 0 0 0 0.40738 1 20985 20985 0.79363 0 1 + 22398 25258 14001 14010 26622 26622 0.09214378833007686 LHYTKFIK 8 Unmodified _LHYTKFIK_ 0 0 0 Tigger3b_dup84|chr1:51371215-51372129:+|1.953437650124572|0.0723921004130481|4.75|151.0|70|3|anti-sense Tigger3b_dup84|chr1:51371215-51372129:+|1.953437650124572|0.0723921004130481|4.75|151.0|70|3|anti-sense Tigger3b_dup84|chr1:51371215-51372129:+|1.953437650124572|0.0723921004130481|4.75|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_1 2 525.3096923828125 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 40.123 1 43.79 43.29 44.29 3.6668 0 0 0 0.40604 1 7922 7922 2.5775 0.27475 1 22399 33410 14002 14011 26623 26623 0.08459227582216045 LIALLTTLVCP 11 Unmodified _LIALLTTLVCP_ 0 0 0 REV__ENSG00000117971|ENST00000261751|CHRNB4 REV__ENSG00000117971|ENST00000261751|CHRNB4 MULTI-MSMS UPN47_class_I_Rep_3 4 578.8529052734375 2 578.854135 1155.69372 0.50618 0.000293 -1.6029 -0.00092784 -1.0967 -0.00063484 578.8529448926721 108.51 0.18829 112.05 111.87 112.06 3.5382 34 19 3 0 0 0 0.66945 1 26548 26548 1.4819 0 1 3623100 + 22400 18644 14003 14012 26624 26624 0.12209846021755766 LIARFGHG 8 Unmodified _LIARFGHG_ 0 0 0 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 MSMS UPN48_class_I_Rep_1 5 435.75250244140625 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 71.455 1 74.921 74.421 75.421 3.466 0 0 0 0.40738 1 16706 16706 0.79363 0 1 22401 5008 14004 14013 26625 26625 0.047206590283281 LIARFGHG 8 Unmodified _LIARFGHG_ 0 0 0 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 MSMS UPN48_class_I_Rep_3 7 435.75103759765625 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 64.84 1 68.348 67.848 68.848 3.5083 0 0 0 0.40738 1 14606 14606 0.79363 0 1 22402 5008 14004 14013 26626 26626 0.047206590283281 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_1 2 427.3025817871094 3 427.26417 1278.77068 -0.0065293 -2.7897E-06 0.59662 0.00025491 0.59009 0.00025212 427.26436628938853 63.969 0.28735 67.325 67.174 67.461 3.3557 40 21 3 0 0 0 22.551 1 15131 15131 0.40827 0 1 181410 + 22403 19719 14005 14014 26627 26627 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_1 2 427.3025817871094 3 427.26417 1278.77068 0.013326 5.6938E-06 0.47507 0.00020298 0.48839 0.00020867 427.26425782372877 58.387 0.78885 61.805 61.387 62.176 3.4171 92 52 3 0 0 0 22.551 1 13583 13583 1.2148 0.51716 1 277960 + 22404 19719 14005 14014 26628 26628 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_2 3 427.3026123046875 3 427.26417 1278.77068 -0.50899 -0.00021747 1.3418 0.00057331 0.83282 0.00035583 427.26491814461957 63.694 0.412 66.95 66.665 67.077 3.2556 51 34 2 0 0 0 22.551 1 15139 15139 1.2148 0.51716 1 166890 + 22405 19719 14005 14014 26629 26629 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_2 3 427.3026123046875 3 427.26417 1278.77068 -0.54915 -0.00023463 0.98642 0.00042146 0.43727 0.00018683 427.26449630314625 65.5 0.29182 68.756 68.566 68.858 3.2556 31 20 2 0 0 0 22.551 1 15692 15692 1.3296 0.63198 1 117940 + 22406 19719 14005 14014 26630 26630 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-MATCH UPN46_class_I_Rep_3 1 3 427.26417 1278.77068 0.050886 2.1742E-05 0.47046 0.00020101 0.52134 0.00022275 427.2643460244818 62.054 0.22515 62.054 61.91 62.135 0 0.18434 -4.3597E-05 NaN 1.2148 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 82372 + 22407 19719 14005 14014 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_3 4 3 427.26417 1278.77068 -0.5246 -0.00022414 1.1498 0.00049127 0.62522 0.00026713 427.26469422951993 65.726 0.34159 68.905 68.659 69.001 3.1795 0.074614 6.8876E-05 NaN 1.3296 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 148020 + 22408 19719 14005 14014 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_1 5 3 427.26417 1278.77068 0.032459 1.3869E-05 0.66147 0.00028262 0.69393 0.00029649 427.2645265737104 58.598 0.25457 62.085 61.943 62.197 3.487 0.21498 0.00020124 NaN 1.2148 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 79005 + 22409 19719 14005 14014 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_2 6 3 427.26417 1278.77068 0.1765 7.5412E-05 0.72166 0.00030834 0.89816 0.00038375 427.2645701894042 58.255 0.53824 61.753 61.498 62.036 3.4987 -0.11619 0.00027839 NaN 1.2148 41 31 2 NaN NaN NaN NaN 0 NaN NaN 0 130280 + 22410 19719 14005 14014 0.14244502081464816 LIARLCKHRVA 11 Unmodified _LIARLCKHRVA_ 0 0 0 REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant REV__TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_3 7 3 427.26417 1278.77068 0.063381 2.708E-05 0.77572 0.00033144 0.8391 0.00035852 427.2646397944489 58.12 0.27184 61.652 61.512 61.784 3.5317 -0.21808 0.00034768 NaN 1.2148 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 67451 + 22411 19719 14005 14014 0.14244502081464816 LIAVNGSVTL 10 Unmodified _LIAVNGSVTL_ 0 0 0 REV__ENSG00000169214|ENST00000641470|OR6F1 REV__ENSG00000169214|ENST00000641470|OR6F1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.7974853515625 2 493.797675 985.580796 -0.31423 -0.00015517 0.52555 0.00025952 0.21132 0.00010435 493.79797805157057 23.728 0.43981 27.458 27.313 27.753 3.7298 63 38 2 0 0 0 0.56118 1 3043 3043 2.9952 0 1 65945 + 22412 20304 14006 14015 26631 26631 0.08742913620108084 LIAYFQDTF 9 Unmodified _LIAYFQDTF_ 0 0 0 REV__L1MA3_dup2080|chr4:144306-144927:-|1.007011034603137|0.2972284211534449|1.76|147.0|45|3|anti-sense REV__L1MA3_dup2080|chr4:144306-144927:-|1.007011034603137|0.2972284211534449|1.76|147.0|45|3|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2855834960938 2 559.281857 1116.54916 NaN NaN NaN NaN NaN NaN NaN 84.072 1 87.754 87.254 88.254 3.6814 0 0 0 0.17222 1 20004 20004 18.146 2.8979 1 + 22413 24999 14007 14016 26632 26632 -0.004450791338740601 LIAYQTKK 8 Unmodified _LIAYQTKK_ 0 0 0 L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|46|2|sense;L1PA5_dup7113|chrX:110090710-110096813:-|3.300775715747009|0.0305743274911579|6.75|151.0|72|2|sense;L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|95|2|sense;L1PA4_dup5878|chr8:47416625-47422756:-|1.768390925550548|0.0316828952312387|5.8|151.0|27|1|sense;L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|33|1|sense L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|46|2|sense L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|46|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.7953186035156 2 482.794935 963.575317 0.3952 0.0001908 1.0469 0.00050545 1.4421 0.00069626 482.79535749241734 116.55 0.028671 120.04 120.03 120.06 3.4965 6 2 3 0 0 0 0.82752 1 28462 28462 0.79363 0 1 111410 22414 14371 14008 14017 26633 26633 0.09207234828284072 LICAKRIGVVH 11 Unmodified _LICAKRIGVVH_ 0 0 0 REV__ENST00000377474.3_1_13:77458332-77458479:-|nuORF REV__ENST00000377474.3_1_13:77458332-77458479:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 604.3672485351562 2 604.868443 1207.72233 0.50948 0.00030817 -0.56252 -0.00034025 -0.053041 -3.2083E-05 604.8682002096374 97.526 0.10461 100.95 100.9 101.01 3.4216 22 14 2 0 0 0 22.551 1 24179 24179 1.1933 0.59184 1 144520 + 22415 22024 14009 14018 26634 26634 0.12678008441571365 LICAKRIGVVH 11 Unmodified _LICAKRIGVVH_ 0 0 0 REV__ENST00000377474.3_1_13:77458332-77458479:-|nuORF REV__ENST00000377474.3_1_13:77458332-77458479:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 604.868443 1207.72233 0.52656 0.0003185 -0.27387 -0.00016566 0.25269 0.00015284 604.8685565337796 97.475 0.044128 101.26 101.22 101.27 3.7861 0.15643 0.00027181 NaN 1.1933 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 47915 + 22416 22024 14009 14018 0.12678008441571365 LICFRHVC 8 Unmodified _LICFRHVC_ 0 0 0 REV__L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|113|2|anti-sense REV__L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|113|2|anti-sense MSMS UPN48_class_I_Rep_2 6 495.7540283203125 2 495.754233 989.493912 NaN NaN NaN NaN NaN NaN NaN 78.816 1 82.449 81.949 82.949 3.6331 0 0 0 0.40738 1 18703 18703 0.79363 0 1 + 22417 30353 14010 14019 26635 26635 -0.001254874069672951 LICIRMHI 8 Unmodified _LICIRMHI_ 0 0 0 L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|6|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|6|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 499.7611083984375 2 499.785533 997.556513 NaN NaN NaN NaN NaN NaN NaN 41.314 1 44.551 44.051 45.051 3.2372 0 0 0 0.40738 1 8369 8369 0 0 1 22418 11533 14011 14020 26636 26636 0.05763658661214777 LICLELIFV 9 Unmodified _LICLELIFV_ 0 0 0 L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|235|2|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|69|1|anti-sense;L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|51|1|anti-sense L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|235|2|anti-sense L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|235|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 531.81689453125 2 531.817021 1061.61949 0.5212 0.00027719 -0.017508 -9.3112E-06 0.5037 0.00026787 531.816948016501 90.275 0.51082 94.122 93.98 94.491 3.847 102 72 2 0 0 0 0.12444 1 21453 21453 2.0598 0.21551 1 111570 22419 14477 14012 14021 26637 26637 0.09114502930265189 LICLELIFV 9 Unmodified _LICLELIFV_ 0 0 0 L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|235|2|anti-sense;L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|69|1|anti-sense;L1PB1_dup6648|chr8:89741733-89743010:+|1.0867017627350484|0.0341949289073992|4.99|150.0|51|1|anti-sense L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|235|2|anti-sense L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|235|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 531.817021 1061.61949 0.42897 0.00022813 -0.087442 -4.6503E-05 0.34153 0.00018163 531.8169505788343 90.288 0.15516 94.035 94.014 94.169 3.7471 -0.043916 -5.7202E-05 NaN 2.0598 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 86215 22420 14477 14012 14021 0.09114502930265189 LICLKYTTR 9 Unmodified _LICLKYTTR_ 0 0 0 REV__L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|26|3|sense REV__L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 555.8209838867188 2 555.820627 1109.6267 NaN NaN NaN NaN NaN NaN NaN 39.549 1 39.549 39.049 40.049 0 0 0 0 0.38916 1 7608 7608 3.2813 0.54611 1 + 22421 28682 14013 14022 26638 26638 0.07627235530662801 LICTHAVL 8 Unmodified _LICTHAVL_ 0 0 0 REV__AluSz_dup98|chr1:1881421-1881699:-|1.407260478989249|0.0240065961444947|5.87|151.0|7|2|sense REV__AluSz_dup98|chr1:1881421-1881699:-|1.407260478989249|0.0240065961444947|5.87|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 435.24761962890625 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 60.929 1 64.407 63.907 64.907 3.4785 0 0 0 0.37715 1 13492 13492 15.768 0 1 + 22422 17222 14014 14023 26639 26639 0.04455647859299461 LICVLDLLVN 10 Unmodified _LICVLDLLVN_ 0 0 0 REV__L1PA17_dup1809|chr6:110800222-110801187:+|1.1201663718762165|0.0089007155403138|6.98|151.0|63|3|anti-sense REV__L1PA17_dup1809|chr6:110800222-110801187:+|1.1201663718762165|0.0089007155403138|6.98|151.0|63|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 558.3331298828125 2 557.83066 1113.64677 0.41755 0.00023292 0.75582 0.00042162 1.1734 0.00065454 557.8311152415023 91.723 0.21801 95.587 95.488 95.706 3.8634 38 28 2 0 0 0 0.56333 2 21750 21750;21756 1.4819 1.4819 1 203880 + 22423 29453 14015 14024 26640;26641 26640 0.09448986470647469 LICWKFFF 8 Unmodified _LICWKFFF_ 0 0 0 L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|211|3|anti-sense L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|211|3|anti-sense L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|211|3|anti-sense MSMS UPN47_class_I_Rep_1 2 552.3046875 2 552.290974 1102.56739 NaN NaN NaN NaN NaN NaN NaN 89.229 1 92.903 92.403 93.403 3.6738 0 0 0 0.40581 1 22308 22308 2.8892 0.31174 1 22424 10136 14016 14025 26642 26642 0.02021384307158769 LICYYALY 8 Unmodified _LICYYALY_ 0 0 0 REV__L1ME1_dup20149|chr10:103179950-103180453:+|3.124267567863264|0.2888875034246387|3.43|151.0|26|1|anti-sense REV__L1ME1_dup20149|chr10:103179950-103180453:+|3.124267567863264|0.2888875034246387|3.43|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_1 5 511.2582702636719 2 511.256797 1020.49904 NaN NaN NaN NaN NaN NaN NaN 43.927 1 47.44 46.94 47.94 3.5132 0 0 0 0.4032 1 8301 8301 6.3541 0 1 + 22425 27660 14017 14026 26643 26643 -0.010389050633762054 LIDEKVLI 8 Unmodified _LIDEKVLI_ 0 0 0 nc|ENSG00000156194|O14830-2|PPEF2;ENSG00000156194|ENST00000286719|PPEF2 nc|ENSG00000156194|O14830-2|PPEF2 nc|ENSG00000156194|O14830-2|PPEF2 MSMS UPN47_class_I_Rep_3 4 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 75.634 1 78.891 78.391 79.391 3.2573 0 0 0 0.40604 1 18773 18773 2.5775 0 1 22426 3725 14018 14027 26644 26644 0.10660699251184269 LIDEPSAYLD 10 Unmodified _LIDEPSAYLD_ 0 0 0 ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENSG00000164163|ENST00000296577|ABCE1 ENST00000510321.1_1_4:146044244-146044510:+|nuORF ENST00000510321.1_1_4:146044244-146044510:+|nuORF MSMS UPN48_class_I_Rep_1 5 568.2793579101562 2 568.279512 1134.54447 NaN NaN NaN NaN NaN NaN NaN 114.94 1 118.57 118.07 119.07 3.6301 0 0 0 0.53105 1 27952 27952 1.4819 0.79152 1 22427 4090 14019 14028 26645 26645 -0.017420080672764016 LIDKLLKILKL 11 Unmodified _LIDKLLKILKL_ 0 0 0 Harlequin-int_dup377|chr10:97555943-97559474:-|1.1888537662313383|0.1867708945572619|2.67|151.0|187|2|anti-sense;Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|205|1|anti-sense;Harlequin-int_dup238|chr6:111284651-111288187:-|4.150482132727121|0.2813414849289727|3.88|151.0|157|1|anti-sense;Harlequin-int_dup230|chr6:35001248-35001839:+|1.074990643672343|0.0358476929236551|4.91|151.0|29|2|anti-sense;Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|207|2|anti-sense;Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|195|1|anti-sense Harlequin-int_dup377|chr10:97555943-97559474:-|1.1888537662313383|0.1867708945572619|2.67|151.0|187|2|anti-sense Harlequin-int_dup377|chr10:97555943-97559474:-|1.1888537662313383|0.1867708945572619|2.67|151.0|187|2|anti-sense MSMS UPN48_class_I_Rep_2 6 437.31072998046875 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 66.716 1 70.202 69.702 70.702 3.4866 0 0 0 0.38417 1 15264 15264 0.073264 0 1 22428 7966 14020 14029 26646 26646 0.26874564566833214 LIDLLRTM 8 Unmodified _LIDLLRTM_ 0 0 0 REV__nc|ENSG00000102038|P28370-2|SMARCA1 REV__nc|ENSG00000102038|P28370-2|SMARCA1 MSMS UPN47_class_I_Rep_3 4 487.7909240722656 2 487.788795 973.563038 NaN NaN NaN NaN NaN NaN NaN 76.449 1 79.706 79.206 80.206 3.2573 0 0 0 0.40625 1 19008 19008 2.3027 0 1 + 22429 18186 14021 14030 26647 26647 0.07519875093601058 LIDSAKLLL 9 Unmodified _LIDSAKLLL_ 0 0 0 L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.3182067871094 2 493.318243 984.621933 0.21228 0.00010472 -0.048337 -2.3846E-05 0.16394 8.0877E-05 493.31816559283703 69.671 0.92643 73.126 72.785 73.711 3.4548 195 71 3 0 0 0 0.035561 1 16260 16260 54.774 0.94076 1 1246800 22430 12946 14022 14031 26648 26648 0.12900674659567812 LIDSAKLLL 9 Unmodified _LIDSAKLLL_ 0 0 0 L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.31829833984375 2 493.318243 984.621933 0.26966 0.00013303 0.0072945 3.5985E-06 0.27696 0.00013663 493.31816554953997 69.548 1.0931 73.069 72.684 73.777 3.5216 230 93 4 0 0 0 0.11683 2 16199 16053;16199 30.637 5.2372 1 1458100 22431 12946 14022 14031 26649;26650 26650 0.12900674659567812 LIDSAKLLL 9 Unmodified _LIDSAKLLL_ 0 0 0 L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|42|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.3183898925781 2 493.318243 984.621933 0.30684 0.00015137 -0.068695 -3.3889E-05 0.23815 0.00011748 493.3181397323839 69.531 1.1333 73.044 72.584 73.717 3.5128 208 89 4 0 0 0 0.11683 2 16097 15942;16097 30.637 5.2372 1 1634300 22432 12946 14022 14031 26651;26652 26652 0.12900674659567812 LIDSELLYL 9 Unmodified _LIDSELLYL_ 0 0 0 REV__HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|109|1|anti-sense REV__HUERS-P3b-int_dup251|chrX:74257337-74259926:+|23.096257984431134|0.4984737845959844|5.53|151.0|109|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.8051147460938 2 539.805165 1077.59578 0.47236 0.00025498 0.16894 9.1197E-05 0.64131 0.00034618 539.8052439550352 81.912 0.5534 85.296 84.983 85.537 3.3839 83 62 2 0 0 0 0.066041 1 20379 20379 42.095 2.1372 1 211620 + 22433 23980 14023 14032 26653 26653 0.06008360697410353 LIDTLLSFNG 10 Unmodified _LIDTLLSFNG_ 0 0 0 REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|76|3|anti-sense REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|76|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.800537109375 2 546.800414 1091.58628 0.40975 0.00022405 -0.12856 -7.0295E-05 0.28119 0.00015376 546.8002996194098 71.701 0.47429 75.076 74.89 75.364 3.3751 55 38 2 0 0 0 0.40227 1 17523 17523 19.257 0 1 100780 + 22434 24457 14024 14033 26654 26654 0.04414592411899321 LIDVGTGYY 9 Unmodified _LIDVGTGYY_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS UPN47_class_I_Rep_1 2 500.7530212402344 2 500.752933 999.491313 0.19594 9.8119E-05 -0.35774 -0.00017914 -0.16179 -8.1019E-05 500.75261066428027 61.957 0.57137 65.325 65.032 65.603 3.3681 90 43 3 0 0 0 0.09884 3 14604 14489;14525;14604 34.102 12.356 1 186660 22435 2420 14025 14034 26655;26656;26657 26657 -0.008453410592892396 LIDVGTGYY 9 Unmodified _LIDVGTGYY_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS UPN47_class_I_Rep_2 3 500.7527770996094 2 500.752933 999.491313 0.21708 0.0001087 -0.44691 -0.00022379 -0.22983 -0.00011509 500.7525456474785 62.163 0.68858 65.423 65.107 65.795 3.2594 105 46 3 0 0 0 0.013968 5 14625 14586;14625;14702;14740;14755 67.344 38.857 1 315140 22436 2420 14025 14034 26658;26659;26660;26661;26662 26659 -0.008453410592892396 LIDVGTGYY 9 Unmodified _LIDVGTGYY_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS UPN47_class_I_Rep_3 4 500.7527160644531 2 500.752933 999.491313 0.19067 9.5478E-05 -0.30519 -0.00015282 -0.11452 -5.7347E-05 500.75265334104085 62.128 0.67822 65.294 65.014 65.693 3.1667 117 49 3 0 0 0 0.005134 4 14737 14655;14698;14737;14779 92.822 58.72 1 298620 22437 2420 14025 14034 26663;26664;26665;26666 26665 -0.008453410592892396 LIEACSPHLL 10 Unmodified _LIEACSPHLL_ 0 0 0 REV__L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|51|2|sense REV__L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|51|2|sense MSMS UPN48_class_I_Rep_3 7 548.29541015625 2 548.296985 1094.57942 NaN NaN NaN NaN NaN NaN NaN 74.956 1 78.522 78.022 79.022 3.5659 0 0 0 0.53105 1 17583 17583 1.4819 0.15237 1 + 22438 29315 14026 14035 26667 26667 0.03590956259677114 LIEEAAQNYQG 11 Unmodified _LIEEAAQNYQG_ 0 0 0 nc|ENSG00000204616|Q9BZY9-2|TRIM31;ENSG00000204616|ENST00000376734|TRIM31 nc|ENSG00000204616|Q9BZY9-2|TRIM31 nc|ENSG00000204616|Q9BZY9-2|TRIM31 MULTI-MSMS UPN47_class_I_Rep_2 3 618.2980346679688 2 618.298767 1234.58298 0.36851 0.00022785 -0.21265 -0.00013148 0.15586 9.6366E-05 618.2986911418226 65.741 0.92414 68.998 68.634 69.558 3.257 123 55 3 0 0 0 0.67264 1 15904 15904 1.1933 0.12188 1 432610 22439 5532 14027 14036 26668 26668 -0.0249270243277806 LIEFCAPVTI 10 Unmodified _LIEFCAPVTI_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MSMS UPN48_class_I_Rep_1 5 553.3035278320312 2 553.301736 1104.58892 NaN NaN NaN NaN NaN NaN NaN 38.998 1 42.503 42.003 43.003 3.5048 0 0 0 0.53105 1 6830 6830 8.7454 0.58988 1 + 22440 19237 14028 14037 26669 26669 0.040807245452015195 LIEFCAPVTI 10 Unmodified _LIEFCAPVTI_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MSMS UPN48_class_I_Rep_3 7 553.3034057617188 2 553.301736 1104.58892 NaN NaN NaN NaN NaN NaN NaN 38.942 1 42.598 42.098 43.098 3.6557 0 0 0 0.53105 1 6751 6751 8.7454 0 1 + 22441 19237 14028 14037 26670 26670 0.040807245452015195 LIEKYPYV 8 Unmodified _LIEKYPYV_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MSMS UPN47_class_I_Rep_1 2 512.78759765625 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 59.633 1 63.031 62.531 63.531 3.3982 0 0 0 0.39996 1 13862 13862 7.9102 1.5561 1 + 22442 20106 14029 14038 26671 26671 0.053244127341372405 LIELRGFLF 9 Unmodified _LIELRGFLF_ 0 0 0 nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD MULTI-SECPEP UPN47_class_I_Rep_3 4 553.8306884765625 2 554.331685 1106.64882 0.47327 0.00026235 -0.11645 -6.4553E-05 0.35682 0.00019779 554.8330497839285 82.226 0.17294 85.563 85.514 85.687 3.337 27 20 2 0 0 0 0.12422 1 20594 20594 2.3027 0 1 112850 22443 4251 14030 14039 26672 26672 0.09975783270738248 LIELRGFLF 9 Unmodified _LIELRGFLF_ 0 0 0 nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD nc|ENSG00000166578|Q96DY2-3|IQCD MULTI-MATCH UPN48_class_I_Rep_1 5 2 554.331685 1106.64882 0.51218 0.00028392 0.34844 0.00019315 0.86062 0.00047707 554.33187327259 81.755 0.15263 85.33 85.255 85.407 3.5753 -0.11644 0.00019927 NaN 2.3027 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 126260 22444 4251 14030 14039 0.09975783270738248 LIELWDKTK 9 Unmodified _LIELWDKTK_ 0 0 0 L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|28|2|sense L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|28|2|sense L1MEg_dup151|chr1:41080170-41081539:+|1.1912228808612195|0.1006008811504367|3.57|149.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 573.3298950195312 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 87.838 1 91.565 91.065 92.065 3.7279 0 0 0 0.3967 1 20902 20902 1.4819 0 1 22445 13371 14031 14040 26673 26673 0.08267158199919322 LIEMLFEAR 9 Unmodified _LIEMLFEAR_ 0 0 0 REV__HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|28|3|sense REV__HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|28|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 561.3262329101562 2 561.30481 1120.59507 0.45321 0.00025439 3.7955 0.0021304 4.2487 0.0023848 561.3071813821995 44.759 0.076939 48.273 48.209 48.286 3.5132 6 5 2 0 0 0 0.12354 1 8541 8541 3.5965 0.31518 1 60222 + 22446 23965 14032 14041 26674 26674 0.039592427767274785 LIEMLFEAR 9 Unmodified _LIEMLFEAR_ 0 0 0 REV__HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|28|3|sense REV__HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|28|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 561.30481 1120.59507 0.41569 0.00023333 3.1772 0.0017834 3.5929 0.0020167 561.3064829531166 44.208 0.22279 47.97 47.843 48.066 3.7617 -0.15147 -0.00010321 NaN 3.5965 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 122650 + 22447 23965 14032 14041 0.039592427767274785 LIENDAEKDY 10 Unmodified _LIENDAEKDY_ 0 0 0 nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C nc|ENSG00000006611|Q9Y6N9-3|USH1C nc|ENSG00000006611|Q9Y6N9-3|USH1C MULTI-MSMS UPN47_class_I_Rep_3 4 605.2867431640625 2 605.285325 1208.5561 0.54541 0.00033013 0.45443 0.00027506 0.99984 0.00060519 605.2855129848164 51.267 0.84893 54.483 54.02 54.869 3.2163 76 41 2 0 0 0 0.56189 1 11403 11403 2.4985 0.19575 1 139480 22448 722 14033 14042 26675 26675 -0.03983811043940477 LIEQLVKRMT 10 Unmodified _LIEQLVKRMT_ 0 0 0 REV__ENST00000472593.1_1_3:183521690-183528368:+|nuORF REV__ENST00000472593.1_1_3:183521690-183528368:+|nuORF MSMS UPN46_class_I_Rep_3 1 615.864501953125 2 615.865566 1229.71658 NaN NaN NaN NaN NaN NaN NaN 74.568 1 74.568 74.068 75.068 0 0 0 0 0.53105 1 17303 17303 1.1933 0.59184 1 + 22449 20013 14034 14043 26676 26676 0.11090865139249217 LIERKQVIE 9 Unmodified _LIERKQVIE_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|64|3|anti-sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3427124023438 2 564.342781 1126.67101 0.016341 9.2219E-06 -0.31647 -0.0001786 -0.30013 -0.00016937 564.3425666493797 42.13 0.78924 45.809 45.466 46.255 3.6792 98 52 2 0 0 0 0.32682 2 8499 8499;8580 12.241 1.4411 1 167610 + 22450 31109 14035 14044 26677;26678 26677 0.11273962948507688 LIERKQVIE 9 Unmodified _LIERKQVIE_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|64|3|anti-sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.3428344726562 2 564.342781 1126.67101 0.097112 5.4805E-05 -0.13772 -7.7723E-05 -0.040611 -2.2919E-05 564.3427203469919 42.675 0.71814 46.036 45.596 46.314 3.3611 94 49 2 0 0 0 0.32682 1 8656 8656 12.241 0.74595 1 128830 + 22451 31109 14035 14044 26679 26679 0.11273962948507688 LIERKQVIE 9 Unmodified _LIERKQVIE_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|64|3|anti-sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3431396484375 2 564.342781 1126.67101 0.10607 5.9863E-05 -0.014408 -8.1308E-06 0.091667 5.1732E-05 564.3426706428875 42.934 0.72966 46.174 45.721 46.45 3.2394 87 48 2 0 0 0 0.32682 1 8761 8761 12.241 0.74595 1 170750 + 22452 31109 14035 14044 26680 26680 0.11273962948507688 LIETQLLL 8 Unmodified _LIETQLLL_ 0 0 0 REV__MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|118|3|anti-sense REV__MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|118|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.7955322265625 2 471.797143 941.579734 0.08139 3.84E-05 -0.31642 -0.00014929 -0.23503 -0.00011089 471.79553982273404 50.135 0.87384 53.479 53.147 54.021 3.3431 80 45 3 0 0 0 0.82752 1 11028 11028 10.183 0 1 204920 + 22453 31386 14036 14045 26681 26681 0.10660699251184269 LIEVEFQLF 9 Unmodified _LIEVEFQLF_ 0 0 0 REV__L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|1|1|sense REV__L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 569.3038940429688 2 569.313158 1136.61176 NaN NaN NaN NaN NaN NaN NaN 59.103 1 62.626 62.126 63.126 3.5231 0 0 0 0.36505 1 12870 12870 7.2892 0 1 + 22454 28801 14037 14046 26682 26682 0.04892066934326067 LIFASLLSY 9 Unmodified _LIFASLLSY_ 0 0 0 REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF MSMS UPN47_class_I_Rep_1 2 513.7986450195312 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 82.082 1 85.594 85.094 86.094 3.5122 0 0 0 0.39428 1 20503 20503 2.0598 0 1 + 22455 22849 14038 14047 26683 26683 0.06796699251208338 LIFFENSPS 9 Unmodified _LIFFENSPS_ 0 0 0 REV__L1MB3_dup16476|chr20:35405849-35406989:+|1.2476832223946344|0.1230638956869024|3.34|151.0|80|3|anti-sense REV__L1MB3_dup16476|chr20:35405849-35406989:+|1.2476832223946344|0.1230638956869024|3.34|151.0|80|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.2664794921875 2 527.266207 1052.51786 0.37181 0.00019604 -0.045977 -2.4242E-05 0.32583 0.0001718 527.2661167834352 81.639 0.48892 85.151 84.899 85.388 3.5122 83 53 2 0 0 0 0.36392 1 20406 20406 10.074 0 1 247040 + 22456 24559 14039 14048 26684 26684 -0.006296521679587386 LIFFKRWFKQK 11 Unmodified _LIFFKRWFKQK_ 0 0 0 L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|17|1|sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|17|1|sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|17|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 514.7883911132812 3 514.309885 1539.90782 -0.28316 -0.00014563 1.0199 0.00052456 0.73678 0.00037893 514.310183906435 12.708 0.091644 12.708 12.685 12.777 0 7 5 2 0 0 0 0.68024 1 181 181 0.50596 0.41111 1 33347 22457 13135 14040 14049 26685 26685 0.15946734232670678 LIFFTKKK 8 Unmodified _LIFFTKKK_ 0 0 0 ENST00000437176.5_1_14:75936668-75936947:+|nuORF ENST00000437176.5_1_14:75936668-75936947:+|nuORF ENST00000437176.5_1_14:75936668-75936947:+|nuORF MSMS UPN48_class_I_Rep_2 6 513.2649536132812 2 512.83132 1023.64809 NaN NaN NaN NaN NaN NaN NaN 114.6 1 118.26 117.76 118.76 3.6616 0 0 0 0.40753 1 27397 27397 0.6015 0 1 22458 6759 14041 14050 26686 26686 0.13720988621696506 LIFHSGLFPIG 11 Unmodified _LIFHSGLFPIG_ 0 0 0 REV__HAL1ME_dup818|chr2:68201486-68202183:-|2.553390467154571|0.050651565378861|5.66|151.0|34|1|anti-sense REV__HAL1ME_dup818|chr2:68201486-68202183:-|2.553390467154571|0.050651565378861|5.66|151.0|34|1|anti-sense MSMS UPN46_class_I_Rep_3 1 600.842041015625 2 600.842416 1199.67028 NaN NaN NaN NaN NaN NaN NaN 52.472 1 52.472 51.972 52.972 0 0 0 0 0.38417 1 11222 11222 1.4819 0.28856 1 + 22459 23505 14042 14051 26687 26687 0.07843168299473291 LIFISKVKKK 10 Unmodified _LIFISKVKKK_ 0 0 0 REV__L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|33|1|anti-sense REV__L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 602.0744018554688 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 110.69 1 114.32 113.82 114.82 3.6326 0 0 0 0.53105 1 26864 26864 0.35063 0.35063 1 + 22460 24515 14043 14052 26688 26688 0.21817166672735766 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2799377441406 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 48.497 1 52.179 51.679 52.679 3.6819 0 0 0 0.53105 1 10467 10467 0.15932 0 1 + 22461 26994 14044 14053 26689 26689 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2794189453125 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 64.205 1 67.561 67.061 68.061 3.3557 0 0 0 0.53105 1 15242 15242 0.15932 0 1 + 22462 26994 14044 14053 26690 26690 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.279541015625 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 39.63 1 43.008 42.508 43.508 3.3785 0 0 0 0.53105 1 7805 7805 0.15932 0 1 + 22463 26994 14044 14053 26691 26691 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.2798156738281 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 39.894 1 43.265 42.765 43.765 3.3712 0 0 0 0.53105 1 7886 7886 0.15932 0 1 + 22464 26994 14044 14053 26692 26692 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.2800598144531 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 48.499 1 51.846 51.346 52.346 3.3465 0 0 0 0.53105 1 10491 10491 0.15932 0 1 + 22465 26994 14044 14053 26693 26693 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2796936035156 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 49.795 1 53.022 52.522 53.522 3.2262 0 0 0 0.53105 1 10945 10945 0.15932 0 1 + 22466 26994 14044 14053 26694 26694 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2796936035156 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 53.928 1 57.113 56.613 57.613 3.1856 0 0 0 0.53105 1 12203 12203 0.15932 0 1 + 22467 26994 14044 14053 26695 26695 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2799987792969 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 53.98 1 57.165 56.665 57.665 3.1856 0 0 0 0.53105 1 12219 12219 0.15932 0 1 + 22468 26994 14044 14053 26696 26696 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.28021240234375 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 60.747 1 63.912 63.412 64.412 3.1651 0 0 0 0.53105 1 14284 14284 0.15932 0 1 + 22469 26994 14044 14053 26697 26697 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.27984619140625 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 65.28 1 68.46 67.96 68.96 3.1795 0 0 0 0.53105 1 15668 15668 0.15932 0 1 + 22470 26994 14044 14053 26698 26698 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN48_class_I_Rep_1 5 454.27984619140625 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 62.683 1 66.145 65.645 66.645 3.4625 0 0 0 0.53105 1 14049 14049 0.15932 0 1 + 22471 26994 14044 14053 26699 26699 0.15243104624119042 LIFLLWRFPR 10 Unmodified _LIFLLWRFPR_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|43|1|anti-sense MSMS UPN48_class_I_Rep_2 6 454.2794494628906 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 19.12 1 22.771 22.271 23.271 3.6509 0 0 0 0.53105 1 1404 1404 0.15932 0 1 + 22472 26994 14044 14053 26700 26700 0.15243104624119042 LIFMIKVY 8 Unmodified _LIFMIKVY_ 0 0 0 REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.8076782226562 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 63.866 1 67.04 66.54 67.54 3.1741 0 0 0 0.40738 1 15235 15235 0.79363 0 1 + 22473 22587 14045 14054 26701 26701 0.08658537621408868 LIFMIKVY 8 Unmodified _LIFMIKVY_ 0 0 0 REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.7971801757812 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 71.795 1 75.013 74.513 75.513 3.2188 0 0 0 0.40604 1 17637 17637 2.5775 0 1 + 22474 22587 14045 14054 26702 26702 0.08658537621408868 LIFMILPTV 9 Unmodified _LIFMILPTV_ 0 0 0 REV__ENSG00000236398|ENST00000446620|TAS2R39 REV__ENSG00000236398|ENST00000446620|TAS2R39 MULTI-MSMS UPN48_class_I_Rep_1 5 523.819580078125 2 523.819564 1045.62458 0.29643 0.00015528 -0.038134 -1.9976E-05 0.2583 0.0001353 523.8194025773926 87.652 0.32776 91.271 91.175 91.502 3.6187 44 31 2 0 0 0 0.48414 1 21005 21005 2.3027 0 1 132720 + 22475 21312 14046 14055 26703 26703 0.1035880679287402 LIFMILPTV 9 Unmodified _LIFMILPTV_ 0 0 0 REV__ENSG00000236398|ENST00000446620|TAS2R39 REV__ENSG00000236398|ENST00000446620|TAS2R39 MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.819564 1045.62458 0.17544 9.1897E-05 -0.26154 -0.000137 -0.086099 -4.5101E-05 523.8191416364956 87.839 0.053429 91.286 91.261 91.314 3.4471 0.007758 -0.00020703 NaN 2.3027 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 77191 + 22476 21312 14046 14055 0.1035880679287402 LIFMILPTV 9 Unmodified _LIFMILPTV_ 0 0 0 REV__ENSG00000236398|ENST00000446620|TAS2R39 REV__ENSG00000236398|ENST00000446620|TAS2R39 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 523.819564 1045.62458 0.29643 0.00015528 -0.038134 -1.9976E-05 0.2583 0.0001353 523.8194025773926 87.652 0.32776 91.271 91.175 91.502 3.6187 -0.007758 2.7011E-05 NaN 2.3027 44 31 2 NaN NaN NaN NaN 0 NaN NaN 0 132720 + 22477 21312 14046 14055 0.1035880679287402 LIFSVSRTV 9 Unmodified _LIFSVSRTV_ 0 0 0 REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|156|2|anti-sense REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|156|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.3055114746094 2 511.305667 1020.59678 0.23157 0.00011841 0.62758 0.00032088 0.85915 0.00043929 511.30590924665967 62.565 1.2922 65.734 65.255 66.547 3.1698 131 82 3 0 0 0 0.28552 1 14770 14770 14.838 2.3067 1 292390 + 22478 27841 14047 14056 26704 26704 0.08730619857010424 LIFVFGER 8 Unmodified _LIFVFGER_ 0 0 0 L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|100|3|anti-sense L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|100|3|anti-sense L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|100|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7823791503906 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.19 115.69 116.69 3.572 0 0 0 0.40738 1 27767 27767 0.79363 0 1 22479 15312 14048 14057 26705 26705 0.05850965656816243 LIFVFNFYNRI 11 Unmodified _LIFVFNFYNRI_ 0 0 0 L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|153|2|anti-sense L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|153|2|anti-sense L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|153|2|anti-sense MSMS UPN47_class_I_Rep_3 4 482.6033020019531 3 482.602845 1444.78671 NaN NaN NaN NaN NaN NaN NaN 31.367 1 34.666 34.166 35.166 3.2991 0 0 0 0.38417 1 5335 5335 0.50596 0 1 22480 8697 14049 14058 26706 26706 0.08210486799362116 LIFVREPL 8 Unmodified _LIFVREPL_ 0 0 0 REV__L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|243|3|anti-sense REV__L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|243|3|anti-sense MSMS UPN47_class_I_Rep_2 3 493.8070068359375 2 493.805303 985.596052 NaN NaN NaN NaN NaN NaN NaN 64.39 1 67.645 67.145 68.145 3.2556 0 0 0 0.40604 1 15336 15336 2.5775 0 1 + 22481 27584 14050 14059 26707 26707 0.10267825207949954 LIFWHKLV 8 Unmodified _LIFWHKLV_ 0 0 0 L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|65|1|anti-sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|65|1|anti-sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|65|1|anti-sense MSMS UPN47_class_I_Rep_3 4 528.3263549804688 2 528.323663 1054.63277 NaN NaN NaN NaN NaN NaN NaN 52.491 1 55.696 55.196 56.196 3.2055 0 0 0 0.36148 1 11770 11770 19.439 2.3261 1 22482 12276 14051 14060 26708 26708 0.10764121824490758 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.38330078125 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 12.369 1 12.369 11.869 12.869 0 0 0 0 0.53105 1 94 94 1.4819 0 1 + 22483 24453 14052 14061 26709 26709 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.3829345703125 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 13.261 1 13.261 12.761 13.761 0 0 0 0 0.53105 1 339 339 1.4819 0 1 + 22484 24453 14052 14061 26710 26710 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.3828735351562 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 15.258 1 15.258 14.758 15.758 0 0 0 0 0.53105 1 836 836 1.4819 0 1 + 22485 24453 14052 14061 26711 26711 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.3832397460938 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 15.412 1 15.412 14.912 15.912 0 0 0 0 0.53105 1 876 876 1.4819 0 1 + 22486 24453 14052 14061 26712 26712 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.3833618164062 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 20.813 1 20.813 20.313 21.313 0 0 0 0 0.53105 1 2228 2228 1.4819 0 1 + 22487 24453 14052 14061 26713 26713 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.3831176757812 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 21.06 1 21.06 20.56 21.56 0 0 0 0 0.53105 1 2292 2292 1.4819 0 1 + 22488 24453 14052 14061 26714 26714 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 629.3827514648438 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 21.193 1 21.193 20.693 21.693 0 0 0 0 0.53105 1 2328 2328 1.4819 0 1 + 22489 24453 14052 14061 26715 26715 0.13517485027432485 LIFYKSIFKV 10 Unmodified _LIFYKSIFKV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|72|1|anti-sense MSMS UPN48_class_I_Rep_3 7 629.7191772460938 2 629.383917 1256.75328 NaN NaN NaN NaN NaN NaN NaN 63.874 1 67.382 66.882 67.882 3.5083 0 0 0 0.53105 1 14315 14315 1.4819 0 1 + 22490 24453 14052 14061 26716 26716 0.13517485027432485 LIGFTSILY 9 Unmodified _LIGFTSILY_ 0 0 0 Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|7|1|sense Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|7|1|sense Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 513.7972412109375 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 73.081 1 76.618 76.118 77.118 3.5373 0 0 0 0.39518 1 17080 17080 1.8442 0 1 22491 33433 14053 14062 26717 26717 0.06796699251208338 LIGLKRLQPRK 11 Unmodified _LIGLKRLQPRK_ 0 0 0 REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF MSMS UPN47_class_I_Rep_3 4 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.143 1 75.362 74.862 75.862 3.2188 0 0 0 0.38417 1 17742 17742 0.50596 0 1 + 22492 22876 14054 14063 26718 26718 0.22417277055819795 LIGLKRLQPRK 11 Unmodified _LIGLKRLQPRK_ 0 0 0 REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF MSMS UPN48_class_I_Rep_1 5 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.041 1 75.514 75.014 76.014 3.4732 0 0 0 0.38417 1 16883 16883 0.50596 0 1 + 22493 22876 14054 14063 26719 26719 0.22417277055819795 LIGLLLFRQP 10 Unmodified _LIGLLLFRQP_ 0 0 0 REV__ENST00000543095.6_2_14:31872224-31889787:-|nuORF REV__ENST00000543095.6_2_14:31872224-31889787:-|nuORF MSMS UPN46_class_I_Rep_3 1 585.3746337890625 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 48.533 1 48.533 48.033 49.033 0 0 0 0 0.53105 1 10121 10121 1.6526 0 1 + 22494 22924 14055 14064 26720 26720 0.15559734087514698 LIGLVVWHGDV 11 Unmodified _LIGLVVWHGDV_ 0 0 0 REV__L1MB7_dup10595|chr9:20817200-20819022:-|1.123066825965674|0.1706703295936829|2.72|151.0|111|3|anti-sense REV__L1MB7_dup10595|chr9:20817200-20819022:-|1.123066825965674|0.1706703295936829|2.72|151.0|111|3|anti-sense MSMS UPN47_class_I_Rep_2 3 604.3458862304688 2 604.345323 1206.67609 NaN NaN NaN NaN NaN NaN NaN 71.901 1 75.19 74.69 75.69 3.2899 0 0 0 0.38417 1 17600 17600 1.3295 0 1 + 22495 26116 14056 14065 26721 26721 0.08102266811124537 LIGRKCKK 8 Unmodified _LIGRKCKK_ 0 0 0 REV__nc|ENSG00000158055|Q8TE85-4|GRHL3 REV__nc|ENSG00000158055|Q8TE85-4|GRHL3 MSMS UPN46_class_I_Rep_3 1 473.3055419921875 2 473.304947 944.595341 NaN NaN NaN NaN NaN NaN NaN 57.741 1 57.741 57.241 58.241 0 0 0 0 0.40738 1 12670 12670 0.79363 0 1 + 22496 19835 14057 14066 26722 26722 0.12082707287243011 LIGSHPDLSF 10 Unmodified _LIGSHPDLSF_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS UPN48_class_I_Rep_2 6 543.2846069335938 2 543.284931 1084.55531 0.39961 0.0002171 -0.14906 -8.0981E-05 0.25056 0.00013612 543.2847785444277 48.756 0.4416 52.473 52.14 52.582 3.7175 38 32 2 0 0 0 0.47413 1 9771 9771 13.906 0.86358 1 89404 22497 3196 14058 14067 26723 26723 0.0164143909764789 LIGSHPDLSF 10 Unmodified _LIGSHPDLSF_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS UPN48_class_I_Rep_3 7 543.7861328125 2 543.284931 1084.55531 0.41528 0.00022561 -0.23503 -0.00012769 0.18025 9.7927E-05 543.2848414180177 48.875 0.36414 52.504 52.296 52.66 3.6291 43 30 2 0 0 0 0.47413 2 9729 9729;9769 13.906 0.86358 1 86463 22498 3196 14058 14067 26724;26725 26724 0.0164143909764789 LIGSTYKKV 9 Unmodified _LIGSTYKKV_ 0 0 0 L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|50|2|sense L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|50|2|sense L1MEg_dup6131|chr6:156204119-156206174:+|2.3075210186320785|0.0166212369276481|7.12|149.0|50|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.8092346191406 2 504.808042 1007.60153 0.28685 0.0001448 1.1408 0.00057587 1.4276 0.00072068 504.8089297783918 44.729 0.069389 44.729 44.678 44.747 0 11 5 3 0 0 0 0.48846 1 9039 9039 1.8442 0 1 863560 22499 13411 14059 14068 26726 26726 0.09803503999762597 LIHCMHVL 8 Unmodified _LIHCMHVL_ 0 0 0 REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|69|2|anti-sense REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|69|2|anti-sense MSMS UPN46_class_I_Rep_3 1 482.79571533203125 2 483.256608 964.498663 NaN NaN NaN NaN NaN NaN NaN 38.888 1 38.888 38.388 39.388 0 0 0 0 0.40581 1 7437 7437 2.8892 0 1 + 22500 24240 14060 14069 26727 26727 0.014993967357895599 LIHDAKFL 8 Unmodified _LIHDAKFL_ 0 0 0 REV__L1MB4_dup5171|chrX:154692810-154693261:+|1.05237688339488|0.0180378795672271|5.87|149.0|32|3|anti-sense REV__L1MB4_dup5171|chrX:154692810-154693261:+|1.05237688339488|0.0180378795672271|5.87|149.0|32|3|anti-sense MSMS UPN47_class_I_Rep_2 3 478.7810974121094 2 478.781828 955.549102 NaN NaN NaN NaN NaN NaN NaN 53.311 1 56.638 56.138 57.138 3.3266 0 0 0 0.40604 1 11961 11961 2.5775 0 1 + 22501 25980 14061 14070 26728 26728 0.06954965656791501 LIHDTTVL 8 Unmodified _LIHDTTVL_ 0 0 0 REV__L1MB8_dup10727|chr11:3989884-3990804:-|1.02189231345965|0.007502683660464|7.09|150.0|38|3|sense REV__L1MB8_dup10727|chr11:3989884-3990804:-|1.02189231345965|0.007502683660464|7.09|150.0|38|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.2633972167969 2 456.263468 910.512382 0.054878 2.5039E-05 -0.089427 -4.0802E-05 -0.03455 -1.5764E-05 456.26333966144864 56.577 0.47753 60.034 59.636 60.113 3.4572 63 26 3 0 0 0 0.82752 1 12937 12937 26.341 0 1 672670 + 22502 26339 14062 14071 26729 26729 0.05354669040207227 LIHEGENSY 9 Unmodified _LIHEGENSY_ 0 0 0 nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 nc|ENSG00000197714|Q14592-2|ZNF460 MULTI-MSMS UPN46_class_I_Rep_3 1 531.2481689453125 2 531.248546 1060.48254 0.11736 6.2348E-05 -0.19549 -0.00010385 -0.078125 -4.1504E-05 531.2484290134637 31.89 0.36329 31.89 31.722 32.085 0 33 25 2 0 0 0 0.42249 1 5374 5374 6.7232 0.36906 1 64578 22503 5386 14063 14072 26730 26730 -0.04528314695744484 LIHFDLIFES 10 Unmodified _LIHFDLIFES_ 0 0 0 L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|93|1|anti-sense L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|93|1|anti-sense L1MA3_dup5971|chr10:29433599-29435783:-|1.9211334734066032|0.4032446509975998|2.25|151.0|93|1|anti-sense MSMS UPN48_class_I_Rep_3 7 617.3270874023438 2 617.329339 1232.64412 NaN NaN NaN NaN NaN NaN NaN 68.966 1 72.476 71.976 72.976 3.5094 0 0 0 0.53105 1 15852 15852 6.2058 0.47393 1 22504 9574 14064 14073 26731 26731 0.037108543373278735 LIHFILLKH 9 Unmodified _LIHFILLKH_ 0 0 0 L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|9|1|sense L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|9|1|sense L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 567.36328125 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 32.429 1 36.119 35.619 36.619 3.6896 0 0 0 0.40038 1 4930 4930 0.6015 0 1 22505 10035 14065 14074 26732 26732 0.15103768778658377 LIHFILLKH 9 Unmodified _LIHFILLKH_ 0 0 0 L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|9|1|sense L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|9|1|sense L1MA7_dup8156|chr20:1457307-1457960:-|1.3456407947231503|0.4163060658888429|1.69|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 567.3642578125 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 32.63 1 36.319 35.819 36.819 3.6896 0 0 0 0.40038 1 4982 4982 0.6015 0 1 22506 10035 14065 14074 26733 26733 0.15103768778658377 LIHFMKRI 8 Unmodified _LIHFMKRI_ 0 0 0 L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|164|1|anti-sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|164|1|anti-sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|164|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.3222045898438 2 529.320597 1056.62664 NaN NaN NaN NaN NaN NaN NaN 34.951 1 38.637 38.137 39.137 3.6859 0 0 0 0.40738 1 6352 6352 0.79363 0 1 22507 9481 14066 14075 26734 26734 0.10059280321343067 LIHFSFHR 8 Unmodified _LIHFSFHR_ 0 0 0 L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|175|3|anti-sense L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|175|3|anti-sense L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|175|3|anti-sense MSMS UPN47_class_I_Rep_3 4 528.7899169921875 2 528.790518 1055.56648 NaN NaN NaN NaN NaN NaN NaN 25.546 1 28.897 28.397 29.397 3.3509 0 0 0 0.40738 1 3608 3608 0.79363 0 1 22508 11226 14067 14076 26735 26735 0.04092305982453581 LIHHPFCSQR 10 Unmodified _LIHHPFCSQR_ 0 0 0 Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|29|2|sense Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|29|2|sense Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 619.3192749023438 2 619.316574 1236.6186 NaN NaN NaN NaN NaN NaN NaN 65.582 1 69.033 68.533 69.533 3.4516 0 0 0 0.53105 1 14931 14931 1.8442 0.36234 1 22509 33004 14068 14077 26736 26736 0.009751013338927805 LIHHSRLR 8 Unmodified _LIHHSRLR_ 0 0 0 REV__L1MD3_dup5163|chr22:20753248-20753679:-|1.9339858069766125|0.230676682772832|3.07|151.0|8|2|sense REV__L1MD3_dup5163|chr22:20753248-20753679:-|1.9339858069766125|0.230676682772832|3.07|151.0|8|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.3135375976562 2 516.314692 1030.61483 0.32396 0.00016726 -1.6562 -0.0008551 -1.3322 -0.00068783 516.3137140742218 96.905 0.042137 96.905 96.878 96.92 0 6 4 2 0 0 0 0.82752 1 23571 23571 0.79363 0 1 37341 + 22510 27487 14069 14078 26737 26737 0.10074799622339015 LIHLCVIKW 9 Unmodified _LIHLCVIKW_ 0 0 0 LTR45B_dup105|chr6:2334830-2335390:+|1.5200144251395633|0.0618336800691443|4.62|151.0|10|2|sense LTR45B_dup105|chr6:2334830-2335390:+|1.5200144251395633|0.0618336800691443|4.62|151.0|10|2|sense LTR45B_dup105|chr6:2334830-2335390:+|1.5200144251395633|0.0618336800691443|4.62|151.0|10|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 562.3350830078125 2 562.83608 1123.65761 0.49221 0.00027703 0.92464 0.00052042 1.4168 0.00079745 562.8363812718543 109.84 0.089485 113.51 113.48 113.57 3.6715 17 11 2 0 0 0 0.12444 1 26152 26152 2.0598 0 1 263630 22511 15644 14070 14079 26738 26738 0.10072433635582456 LIHLKKLFSF 10 Unmodified _LIHLKKLFSF_ 0 0 0 REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 623.3895263671875 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.62 1 107.4 106.9 107.9 3.7788 0 0 0 0.53105 1 25473 25473 1.4819 0 1 + 22512 17319 14071 14080 26739 26739 0.15192307121583326 LIHLKKLFSF 10 Unmodified _LIHLKKLFSF_ 0 0 0 REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 623.388671875 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.66 1 107.28 106.78 107.78 3.6209 0 0 0 0.53105 1 24990 24990 1.4819 0 1 + 22513 17319 14071 14080 26740 26740 0.15192307121583326 LIHLKKLFSF 10 Unmodified _LIHLKKLFSF_ 0 0 0 REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 623.3895874023438 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 104.43 1 108.13 107.63 108.63 3.6991 0 0 0 0.53105 1 24718 24718 1.4819 0 1 + 22514 17319 14071 14080 26741 26741 0.15192307121583326 LIHLKKLFSF 10 Unmodified _LIHLKKLFSF_ 0 0 0 REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 623.3890991210938 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.49 1 107.23 106.73 107.73 3.7434 0 0 0 0.53105 1 24442 24442 1.4819 0 1 + 22515 17319 14071 14080 26742 26742 0.15192307121583326 LIHQRRHR 8 Unmodified _LIHQRRHR_ 0 0 0 REV__L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|7|1|sense REV__L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 558.335205078125 2 558.33649 1114.65843 NaN NaN NaN NaN NaN NaN NaN 48.771 1 52.488 51.988 52.988 3.7175 0 0 0 0.40746 1 9781 9781 0.69038 0 1 + 22516 27922 14072 14081 26743 26743 0.10568409119491662 LIHSLYEHA 9 Unmodified _LIHSLYEHA_ 0 0 0 L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|82|3|anti-sense L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|82|3|anti-sense L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|82|3|anti-sense MSMS UPN48_class_I_Rep_2 6 541.7855224609375 2 541.785099 1081.55564 NaN NaN NaN NaN NaN NaN NaN 67.448 1 70.944 70.444 71.444 3.4964 0 0 0 0.39518 1 15489 15489 1.8442 0 1 22517 12689 14073 14082 26744 26744 0.01812858817538654 LIHTGTRIRSR 11 Unmodified _LIHTGTRIRSR_ 0 0 0 REV__MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|20|2|anti-sense REV__MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 437.26568603515625 3 437.265227 1308.77385 NaN NaN NaN NaN NaN NaN NaN 23.878 1 27.228 26.728 27.728 3.3509 0 0 0 0.38417 1 3112 3112 0.40827 0.13925 1 + 22518 31637 14074 14083 26745 26745 0.13181468459811185 LIHYKHIWKKK 11 Unmodified _LIHYKHIWKKK_ 0 0 0 REV__L1ME4a_dup6904|chr3:71284578-71284974:+|1.2586432958050189|0.0036420909076954|8.43|148.0|8|2|sense REV__L1ME4a_dup6904|chr3:71284578-71284974:+|1.2586432958050189|0.0036420909076954|8.43|148.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 498.9763488769531 3 498.641634 1492.90307 0.24267 0.00012101 0.10247 5.1093E-05 0.34514 0.0001721 498.6415159175024 55.259 0.84604 58.767 58.283 59.129 3.5082 94 54 3 0 0 0 0.68478 1 11763 11763 0.094841 0 1 137540 + 22519 28241 14075 14084 26746 26746 0.1763385008989644 LIHYTKTF 8 Unmodified _LIHYTKTF_ 0 0 0 REV__L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|18|2|sense REV__L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.7929077148438 2 511.78711 1021.55967 0.16537 8.4632E-05 2.6766 0.0013698 2.8419 0.0014545 511.78498424617766 52.521 0.60373 56.079 55.955 56.559 3.5585 106 36 4 0 0 0 0.82752 1 11775 11775 7.2892 2.0586 1 169740 + 22520 26446 14076 14085 26747 26747 0.04974948311235039 LIIAVAGRQRT 11 Unmodified _LIIAVAGRQRT_ 0 0 0 REV__ENST00000397137.5_2_20:36146158-36146254:-|nuORF REV__ENST00000397137.5_2_20:36146158-36146254:-|nuORF MSMS UPN46_class_I_Rep_3 1 599.372314453125 2 599.374946 1196.73534 NaN NaN NaN NaN NaN NaN NaN 80.465 1 80.465 79.965 80.965 0 0 0 0 0.38417 1 18956 18956 1.4819 0.95714 1 + 22521 22128 14077 14086 26748 26748 0.14484162825328895 LIIHCKIM 8 Unmodified _LIIHCKIM_ 0 0 0 L1MC4_dup17140|chr11:121541940-121542895:-|2.376285977652884|0.0716679912030878|5.05|151.0|51|1|anti-sense L1MC4_dup17140|chr11:121541940-121542895:-|2.376285977652884|0.0716679912030878|5.05|151.0|51|1|anti-sense L1MC4_dup17140|chr11:121541940-121542895:-|2.376285977652884|0.0716679912030878|5.05|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7718505859375 2 485.782459 969.550365 NaN NaN NaN NaN NaN NaN NaN 24.082 1 27.722 27.222 28.222 3.6397 0 0 0 0.40738 1 2738 2738 0.79363 0 1 22522 11419 14078 14087 26749 26749 0.06437140429704868 LIIKQQQTET 10 Unmodified _LIIKQQQTET_ 0 0 0 REV__L1PA5_dup5778|chr8:90023720-90027759:-|1.9237790846135288|0.2596789000339231|2.89|151.0|48|2|sense REV__L1PA5_dup5778|chr8:90023720-90027759:-|1.9237790846135288|0.2596789000339231|2.89|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 601.3428955078125 2 601.342978 1200.6714 NaN NaN NaN NaN NaN NaN NaN 83.587 1 86.999 86.499 87.499 3.4116 0 0 0 0.53105 1 20840 20840 1.6526 0 1 + 22523 29787 14079 14088 26750 26750 0.07909337877731559 LIIKTKSKQL 10 Unmodified _LIIKTKSKQL_ 0 0 0 REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|9|1|sense REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 586.392578125 2 586.392273 1170.76999 NaN NaN NaN NaN NaN NaN NaN 43.198 1 43.198 42.698 43.698 0 0 0 0 0.53105 1 8605 8605 0.40072 0 1 + 22524 26662 14080 14089 26751 26751 0.19143985913433426 LIIKTKSKQL 10 Unmodified _LIIKTKSKQL_ 0 0 0 REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|9|1|sense REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 586.3926391601562 2 586.392273 1170.76999 NaN NaN NaN NaN NaN NaN NaN 45.176 1 45.176 44.676 45.676 0 0 0 0 0.53105 1 9161 9161 0.40072 0 1 + 22525 26662 14080 14089 26752 26752 0.19143985913433426 LIILDHDT 8 Unmodified _LIILDHDT_ 0 0 0 nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000481328.7_1_11:76905078-76923312:+|nuORF nc|ENSG00000137474|Q13402-5|MYO7A nc|ENSG00000137474|Q13402-5|MYO7A MSMS UPN48_class_I_Rep_3 7 470.2597351074219 2 470.260925 938.507297 NaN NaN NaN NaN NaN NaN NaN 95.294 1 99.195 98.695 99.695 3.9016 0 0 0 0.40738 1 22588 22588 0.79363 0 1 22526 3026 14081 14090 26753 26753 0.035583651776164515 LIINATPKAYI 11 Unmodified _LIINATPKAYI_ 0 0 0 REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 406.2485656738281 3 406.24818 1215.72271 NaN NaN NaN NaN NaN NaN NaN 81.644 1 85.157 84.657 85.657 3.5122 0 0 0 0.38417 1 20379 20379 0.45452 0 1 + 22527 29502 14082 14091 26754 26754 0.12347706642412959 LIINATPKAYI 11 Unmodified _LIINATPKAYI_ 0 0 0 REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 406.2489013671875 3 406.24818 1215.72271 NaN NaN NaN NaN NaN NaN NaN 80.74 1 84.11 83.61 84.61 3.3694 0 0 0 0.38417 1 20102 20102 1.3296 0 1 + 22528 29502 14082 14091 26755 26755 0.12347706642412959 LIINATPKAYI 11 Unmodified _LIINATPKAYI_ 0 0 0 REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 406.2487487792969 3 406.24818 1215.72271 NaN NaN NaN NaN NaN NaN NaN 80.882 1 84.539 84.039 85.039 3.6567 0 0 0 0.38417 1 19189 19189 1.3296 0 1 + 22529 29502 14082 14091 26756 26756 0.12347706642412959 LIINATPKAYI 11 Unmodified _LIINATPKAYI_ 0 0 0 REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense REV__L1PA3_dup10307|chr19:24112741-24115687:+|1.9653674560431047|0.1032919311679222|4.25|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 406.2489318847656 3 406.24818 1215.72271 NaN NaN NaN NaN NaN NaN NaN 81.327 1 85.012 84.512 85.512 3.685 0 0 0 0.38417 1 19251 19251 0.45452 0 1 + 22530 29502 14082 14091 26757 26757 0.12347706642412959 LIIPKPTLDS 10 Unmodified _LIIPKPTLDS_ 0 0 0 nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4 nc|ENSG00000156920|Q8IZF6-2|ADGRG4 nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MSMS UPN46_class_I_Rep_3 1 548.8347778320312 2 548.834257 1095.65396 NaN NaN NaN NaN NaN NaN NaN 32.615 1 32.615 32.115 33.115 0 0 0 0 0.53105 1 5603 5603 1.4819 0 1 22531 3745 14083 14092 26758 26758 0.10996042342731016 LIIPKRIIY 9 Unmodified _LIIPKRIIY_ 0 0 0 REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense MSMS UPN48_class_I_Rep_3 7 564.881103515625 2 564.878802 1127.74305 NaN NaN NaN NaN NaN NaN NaN 109.9 1 113.57 113.07 114.07 3.67 0 0 0 0.39428 1 26102 26102 2.0598 0 1 + 22532 23946 14084 14093 26759 26759 0.18428922092903122 LIIPKRIIY 9 Unmodified _LIIPKRIIY_ 0 0 0 REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense MSMS UPN48_class_I_Rep_3 7 564.8809814453125 2 564.878802 1127.74305 NaN NaN NaN NaN NaN NaN NaN 110.03 1 113.7 113.2 114.2 3.67 0 0 0 0.39428 1 26128 26128 2.0598 0 1 + 22533 23946 14084 14093 26760 26760 0.18428922092903122 LIIQLKSGQK 10 Unmodified _LIIQLKSGQK_ 0 0 0 L1M1_dup446|chr1:173775853-173778065:-|1.473330568110128|0.1157249979847715|3.67|151.0|69|3|sense L1M1_dup446|chr1:173775853-173778065:-|1.473330568110128|0.1157249979847715|3.67|151.0|69|3|sense L1M1_dup446|chr1:173775853-173778065:-|1.473330568110128|0.1157249979847715|3.67|151.0|69|3|sense MSMS UPN48_class_I_Rep_2 6 564.3792724609375 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 108.13 1 111.81 111.31 112.31 3.6746 0 0 0 0.53105 1 25612 25612 5.7319 0 1 22534 8570 14085 14094 26761 26761 0.14910839845242663 LIIRKKKKKQH 11 Unmodified _LIIRKKKKKQH_ 0 0 0 REV__L1M2a_dup111|chr4:129056243-129057434:-|2.7478435120392053|0.0348909644395228|6.3|151.0|1|1|sense REV__L1M2a_dup111|chr4:129056243-129057434:-|2.7478435120392053|0.0348909644395228|6.3|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 474.2824401855469 3 473.992667 1418.95617 NaN NaN NaN NaN NaN NaN NaN 39.603 1 39.603 39.103 40.103 0 0 0 0 0.38417 1 7622 7622 0.094841 0 1 + 22535 24254 14086 14095 26762 26762 0.2634522787257083 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 454.967529296875 3 454.967236 1361.87988 0.045286 2.0604E-05 0.62062 0.00028236 0.66591 0.00030297 454.96740129694297 41.045 0.53601 44.551 44.334 44.87 3.506 86 46 3 0 0 0 0.68132 1 7388 7388 0.40827 0 1 229680 + 22536 25076 14087 14096 26763 26763 0.2134141125259248 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 454.9677734375 3 454.967236 1361.87988 0.039304 1.7882E-05 0.79542 0.00036189 0.83473 0.00037977 455.30199826637687 42.62 1.0677 46.128 45.512 46.58 3.5079 121 92 2 0 0 0 0.68502 1 7772 7772 0.073264 0 1 346820 + 22537 25076 14087 14096 26764 26764 0.2134141125259248 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 454.9678649902344 3 454.967236 1361.87988 NaN NaN NaN NaN NaN NaN NaN 40.759 1 44.265 43.765 44.765 3.506 0 0 0 0.38417 1 7349 7349 1.2148 0 1 + 22538 25076 14087 14096 26765 26765 0.2134141125259248 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 454.9676818847656 3 454.967236 1361.87988 0.099597 4.5314E-05 0.87725 0.00039912 0.97684 0.00044443 454.9674562831024 42.159 0.45782 45.917 45.716 46.174 3.7579 76 43 3 0 0 0 0.68502 1 7778 7778 0.073264 0 1 265350 + 22539 25076 14087 14096 26766 26766 0.2134141125259248 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 454.967236 1361.87988 0.045286 2.0604E-05 0.62062 0.00028236 0.66591 0.00030297 454.96740129694297 41.045 0.53601 44.551 44.334 44.87 3.506 -0.10402 8.1197E-05 NaN 0.40827 86 46 3 NaN NaN NaN NaN 0 NaN NaN 0 229680 + 22540 25076 14087 14096 0.2134141125259248 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 454.967236 1361.87988 0.10664 4.8516E-05 0.19585 8.9108E-05 0.30249 0.00013762 454.967229765216 41.025 0.21704 44.776 44.65 44.867 3.7508 0.12129 -0.00049857 NaN 0.40827 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 155650 + 22541 25076 14087 14096 0.2134141125259248 LIIWTKLLLIH 11 Unmodified _LIIWTKLLLIH_ 0 0 0 REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense REV__L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|9|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 454.967236 1361.87988 0.08807 4.0069E-05 0.69481 0.00031612 0.78288 0.00035618 455.30187030540804 40.992 0.20533 44.638 44.579 44.784 3.6458 -0.017267 0.00018246 NaN 0.40827 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 160030 + 22542 25076 14087 14096 0.2134141125259248 LIIWYWFRV 9 Unmodified _LIIWYWFRV_ 0 0 0 REV__L1ME2_dup9|chr1:1094700-1096200:-|1.3622020739965253|0.3960316163025142|1.78|151.0|110|3|anti-sense REV__L1ME2_dup9|chr1:1094700-1096200:-|1.3622020739965253|0.3960316163025142|1.78|151.0|110|3|anti-sense MSMS UPN46_class_I_Rep_3 1 648.3662719726562 2 648.368601 1294.72265 NaN NaN NaN NaN NaN NaN NaN 78.462 1 78.462 77.962 78.962 0 0 0 0 0.40038 1 18377 18377 0.6015 0.076735 1 + 22543 27895 14088 14097 26767 26767 0.0870775143305309 LIKAGRER 8 Unmodified _LIKAGRER_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 58.664 1 61.945 61.445 62.445 3.2818 0 0 0 0.40604 1 13597 13597 2.5775 0 1 22544 5035 14089 14098 26768 26768 0.1039228863688777 LIKARSLVID 10 Unmodified _LIKARSLVID_ 0 0 0 REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|100|1|anti-sense REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|100|1|anti-sense MSMS UPN46_class_I_Rep_3 1 564.3592529296875 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 62.597 1 62.597 62.097 63.097 0 0 0 0 0.53105 1 14003 14003 3.5965 0 1 + 22545 25767 14090 14099 26769 26769 0.14910839845219925 LIKETTTGY 9 Unmodified _LIKETTTGY_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-MSMS UPN46_class_I_Rep_3 1 513.2791748046875 2 513.279315 1024.54408 0.17655 9.062E-05 -0.009362 -4.8053E-06 0.16719 8.5814E-05 513.2792256509169 35.322 0.55048 35.322 34.986 35.536 0 58 39 2 0 0 0 0.048662 2 6370 6370;6418 49.554 24.155 1 130880 22546 16673 14091 14100 26770;26771 26770 0.03278617003502404 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 510.6342468261719 3 510.634146 1528.88061 NaN NaN NaN NaN NaN NaN NaN 98.342 1 102.13 101.63 102.63 3.7861 0 0 0 0.38417 1 24347 24347 0.094841 0.011491 1 + 22547 27514 14092 14101 26772 26772 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.6343078613281 3 510.634146 1528.88061 0.32356 0.00016522 -0.1278 -6.5261E-05 0.19576 9.996E-05 510.6340401131628 97.216 0.34967 100.7 100.48 100.83 3.4836 75 49 2 0 0 0 0.68478 1 23884 23884 0.094841 0 1 198240 + 22548 27514 14092 14101 26773 26773 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.6343078613281 3 510.634146 1528.88061 0.32336 0.00016512 -0.035452 -1.8103E-05 0.28791 0.00014701 510.6339845042191 97.958 0.245 101.44 101.33 101.58 3.4836 47 32 2 0 0 0 0.68478 1 24032 24032 0.094841 0.094841 1 139730 + 22549 27514 14092 14101 26774 26774 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.9692077636719 3 510.634146 1528.88061 0.32673 0.00016684 0.089183 4.554E-05 0.41591 0.00021238 510.63408349813994 97.553 0.25239 100.97 100.89 101.15 3.4216 49 35 2 0 0 0 0.68478 1 24169 24169 0.094841 0 1 171580 + 22550 27514 14092 14101 26775 26775 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.968505859375 3 510.634146 1528.88061 0.32659 0.00016677 0.061996 3.1657E-05 0.38858 0.00019842 510.6340547242711 98.134 0.21796 101.56 101.42 101.64 3.4216 43 29 2 0 0 0 0.68478 1 24312 24312 0.094841 0.011491 1 121630 + 22551 27514 14092 14101 26776 26776 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.6341552734375 3 510.634146 1528.88061 0.32662 0.00016678 0.17529 8.951E-05 0.50191 0.00025629 510.63403307685525 98.261 0.27073 101.69 101.63 101.9 3.4328 46 36 2 0 0 0 0.68478 1 24333 24333 0.094841 0 1 133280 + 22552 27514 14092 14101 26777 26777 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MSMS UPN47_class_I_Rep_3 4 510.63385009765625 3 510.634146 1528.88061 NaN NaN NaN NaN NaN NaN NaN 97.967 1 101.39 100.89 101.89 3.4216 0 0 0 0.38417 1 24270 24270 0.094841 0 1 + 22553 27514 14092 14101 26778 26778 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 510.9692077636719 3 510.634146 1528.88061 0.32673 0.00016684 0.089183 4.554E-05 0.41591 0.00021238 510.63408349813994 97.553 0.25239 100.97 100.89 101.15 3.4216 49 35 2 0 0 0 22.551 1 24169 24169 0.094841 0 1 171580 + 22554 27514 14092 14101 26779 26779 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.6343994140625 3 510.634146 1528.88061 0.22781 0.00011633 0.26236 0.00013397 0.49017 0.0002503 510.6342101399409 95.551 0.44134 99.168 98.954 99.395 3.6167 99 56 2 0 0 0 0.68478 2 22993 22993;23058 0.094841 0.011491 1 271740 + 22555 27514 14092 14101 26780;26781 26780 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.6342468261719 3 510.634146 1528.88061 0.22783 0.00011634 0.073193 3.7375E-05 0.30102 0.00015371 510.63413810601725 95.788 0.13048 99.4 99.356 99.487 3.6124 25 17 2 0 0 0 0.68478 1 23086 23086 0.094841 0 1 201920 + 22556 27514 14092 14101 26782 26782 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.6344909667969 3 510.634146 1528.88061 0.31994 0.00016337 0.14705 7.5091E-05 0.467 0.00023846 510.6341544337598 95.372 0.46355 99.152 98.802 99.266 3.7804 106 63 3 0 0 0 0.68478 1 22647 22647 0.094841 0 1 328740 + 22557 27514 14092 14101 26783 26783 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.6343688964844 3 510.634146 1528.88061 0.31968 0.00016324 0.051996 2.6551E-05 0.37167 0.00018979 510.6341478932909 95.571 0.2443 99.351 99.266 99.51 3.7804 52 33 2 0 0 0 0.68478 1 22730 22730 0.094841 0.011491 1 270960 + 22558 27514 14092 14101 26784 26784 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.6343994140625 3 510.634146 1528.88061 0.31966 0.00016323 0.011028 5.6313E-06 0.33069 0.00016886 510.63411787426435 95.923 0.23993 99.704 99.583 99.823 3.7804 47 33 2 0 0 0 0.68478 2 22778 22778;22806 0.094841 0 1 166170 + 22559 27514 14092 14101 26785;26786 26785 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.6341552734375 3 510.634146 1528.88061 0.31975 0.00016327 -0.031248 -1.5956E-05 0.2885 0.00014732 510.634052450626 97.032 0.64236 100.81 100.23 100.87 3.7804 116 82 2 0 0 0 0.68478 1 23033 23033 0.094841 0.094841 1 566480 + 22560 27514 14092 14101 26787 26787 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.63427734375 3 510.634146 1528.88061 0.31979 0.0001633 0.065064 3.3224E-05 0.38486 0.00019652 510.9685056883177 97.145 0.87234 100.92 100.83 101.7 3.779 185 121 2 0 0 0 0.68478 3 23121 23121;23176;23201 0.094841 0 1 453300 + 22561 27514 14092 14101 26788;26789;26790 26788 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 510.9691467285156 3 510.634146 1528.88061 0.31968 0.00016324 0.051996 2.6551E-05 0.37167 0.00018979 510.6341478932909 95.571 0.2443 99.351 99.266 99.51 3.7804 52 33 2 0 0 0 22.551 1 22700 22700 0.094841 0 1 270960 + 22562 27514 14092 14101 26791 26791 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.6341857910156 3 510.634146 1528.88061 0.2882 0.00014717 0.27463 0.00014024 0.56284 0.0002874 510.63418338303467 95.22 0.35698 99.122 98.893 99.25 3.9016 60 46 2 0 0 0 0.68478 1 22561 22561 0.094841 0.011491 1 193260 + 22563 27514 14092 14101 26792 26792 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.6343688964844 3 510.634146 1528.88061 0.28783 0.00014698 0.26843 0.00013707 0.55626 0.00028404 510.63407466059454 97.241 1.2279 101.15 100.39 101.61 3.9084 362 166 3 0 0 0 0.68081 1 22952 22952 0.45452 0.35968 1 543670 + 22564 27514 14092 14101 26793 26793 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 510.634146 1528.88061 0.319 0.00016289 0.046786 2.389E-05 0.36579 0.00018678 510.63392712367784 99.431 0.052986 99.431 99.392 99.445 0 -0.080561 9.2235E-06 NaN 0.094841 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 50492 + 22565 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 510.634146 1528.88061 0.31919 0.00016299 0.075335 3.8469E-05 0.39452 0.00020146 510.63411323560933 99.112 0.053329 99.112 99.084 99.137 0 0.10888 -9.4555E-05 NaN 0.094841 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 81391 + 22566 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 510.634146 1528.88061 0.35705 0.00018232 -0.059537 -3.0401E-05 0.29752 0.00015192 510.6341346268186 95.47 0.13052 99.235 99.162 99.293 3.7648 0.018683 -0.00034124 NaN 0.094841 19 17 2 NaN NaN NaN NaN 0 NaN NaN 0 66726 + 22567 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 510.634146 1528.88061 0.32351 0.00016519 -0.20229 -0.0001033 0.12122 6.1898E-05 510.63392940817675 95.522 0.18093 98.997 98.91 99.091 3.4753 -0.0059332 -0.00051985 NaN 0.094841 28 23 2 NaN NaN NaN NaN 0 NaN NaN 0 109010 + 22568 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 510.634146 1528.88061 0.32345 0.00016517 -0.14877 -7.5966E-05 0.17468 8.9199E-05 510.6340542291236 95.711 0.13323 99.187 99.125 99.258 3.4753 -0.029219 -0.00047794 NaN 0.094841 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 86845 + 22569 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 510.634146 1528.88061 0.22783 0.00011634 0.073193 3.7375E-05 0.30102 0.00015371 510.63413810601725 95.788 0.13048 99.4 99.356 99.487 3.6124 -0.11141 4.9676E-05 NaN 0.094841 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 201920 + 22570 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 510.634146 1528.88061 0.22772 0.00011628 0.35646 0.00018202 0.58418 0.0002983 510.63435242864153 95.127 0.22375 98.744 98.618 98.842 3.6167 -0.25931 0.00033609 NaN 0.094841 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 111360 + 22571 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 510.634146 1528.88061 0.22781 0.00011633 0.26236 0.00013397 0.49017 0.0002503 510.6342101399409 95.551 0.44134 99.168 98.954 99.395 3.6167 -0.04777 0.00015188 NaN 0.094841 99 56 2 NaN NaN NaN NaN 0 NaN NaN 0 271740 + 22572 27514 14092 14101 0.13732205901624184 LIKILYYWRVY 11 Unmodified _LIKILYYWRVY_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 510.634146 1528.88061 0.31994 0.00016337 0.14705 7.5091E-05 0.467 0.00023846 510.6341544337598 95.372 0.46355 99.152 98.802 99.266 3.7804 0.14882 1.531E-05 NaN 0.094841 106 63 3 NaN NaN NaN NaN 0 NaN NaN 0 328740 + 22573 27514 14092 14101 0.13732205901624184 LIKKLYLFP 9 Unmodified _LIKKLYLFP_ 0 0 0 REV__HAL1_dup14375|chr10:21553950-21554319:-|1.0369212129375518|0.0311151059204166|5.06|151.0|21|1|anti-sense REV__HAL1_dup14375|chr10:21553950-21554319:-|1.0369212129375518|0.0311151059204166|5.06|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_3 4 567.753173828125 2 567.867903 1133.72125 NaN NaN NaN NaN NaN NaN NaN 72.994 1 76.221 75.721 76.721 3.2271 0 0 0 0.40038 1 18000 18000 0.6015 0 1 + 22574 23354 14093 14102 26794 26794 0.1597411734430807 LIKKYVIAKK 10 Unmodified _LIKKYVIAKK_ 0 0 0 Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|27|1|anti-sense Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|27|1|anti-sense Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|27|1|anti-sense MSMS UPN46_class_I_Rep_3 1 602.7345581054688 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 115.55 1 115.55 115.05 116.05 0 0 0 0 0.53105 1 28582 28582 0.40072 0.40072 1 22575 33046 14094 14103 26795 26795 0.21817166672735766 LIKLEEWF 8 Unmodified _LIKLEEWF_ 0 0 0 REV__ENST00000264990.10_1_3:132297708-132322075:-|nuORF REV__ENST00000264990.10_1_3:132297708-132322075:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.8048095703125 2 539.302593 1076.59063 -0.03881 -2.093E-05 -0.13227 -7.1334E-05 -0.17108 -9.2264E-05 539.3024333213956 32.946 0.86106 36.659 36.398 37.259 3.7131 110 61 2 0 0 0 0.82752 1 5711 5711 0.69038 0 1 153560 + 22576 21586 14095 14104 26796 26796 0.0554010162547911 LIKLESATKED 11 Unmodified _LIKLESATKED_ 0 0 0 REV__nc|ENSG00000148835|Q15542-2|TAF5 REV__nc|ENSG00000148835|Q15542-2|TAF5 MSMS UPN48_class_I_Rep_3 7 416.2347717285156 3 416.234487 1245.68163 NaN NaN NaN NaN NaN NaN NaN 104.26 1 107.98 107.48 108.48 3.7192 0 0 0 0.37931 1 24613 24613 3.5927 0 1 + 22577 19600 14096 14105 26797 26797 0.06861900812282329 LIKLWWVVL 9 Unmodified _LIKLWWVVL_ 0 0 0 REV__ENST00000296666.12_1_5:126883515-126883566:+|nuORF REV__ENST00000296666.12_1_5:126883515-126883566:+|nuORF MSMS UPN46_class_I_Rep_3 1 585.7008056640625 2 585.375895 1168.73724 NaN NaN NaN NaN NaN NaN NaN 45.682 1 45.682 45.182 46.182 0 0 0 0 0.40038 1 9310 9310 0.6015 0.076735 1 + 22578 21656 14097 14106 26798 26798 0.1596182358121041 LIKPNVNY 8 Unmodified _LIKPNVNY_ 0 0 0 REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A MSMS UPN46_class_I_Rep_3 1 480.7618713378906 2 480.779285 959.544017 NaN NaN NaN NaN NaN NaN NaN 49.632 1 49.632 49.132 50.132 0 0 0 0 0.37214 1 10431 10431 16.942 0 1 + 22579 20633 14098 14107 26799 26799 0.06262661794175983 LIKQPLLPT 9 Unmodified _LIKQPLLPT_ 0 0 0 REV__chr11:60066848-60066951|33|45.88|0.01|12.9|+|0|TE_info:L2a,L2a_dup113646,L2,LINE,donor,+,60065420,60066848|None,MS4A3|17 REV__chr11:60066848-60066951|33|45.88|0.01|12.9|+|0|TE_info:L2a,L2a_dup113646,L2,LINE,donor,+,60065420,60066848|None,MS4A3|17 MULTI-MSMS UPN47_class_I_Rep_1 2 511.8330993652344 2 511.83406 1021.65357 0.20927 0.00010711 -0.032154 -1.6457E-05 0.17712 9.0657E-05 511.83388716427436 68.499 0.46828 71.864 71.532 72 3.3646 74 34 3 0 0 0 0.36392 1 16482 16482 10.074 0 1 191460 + 22580 17426 14099 14108 26800 26800 0.14360667413507144 LIKQPLLPT 9 Unmodified _LIKQPLLPT_ 0 0 0 REV__chr11:60066848-60066951|33|45.88|0.01|12.9|+|0|TE_info:L2a,L2a_dup113646,L2,LINE,donor,+,60065420,60066848|None,MS4A3|17 REV__chr11:60066848-60066951|33|45.88|0.01|12.9|+|0|TE_info:L2a,L2a_dup113646,L2,LINE,donor,+,60065420,60066848|None,MS4A3|17 MULTI-MSMS UPN47_class_I_Rep_2 3 511.8337707519531 2 511.83406 1021.65357 0.076606 3.9209E-05 -0.12348 -6.32E-05 -0.046871 -2.399E-05 511.83396577563394 68.962 0.5742 72.231 72.054 72.629 3.2696 86 46 2 0 0 0 0.21527 2 16678 16678;16700 19.257 0 1 174990 + 22581 17426 14099 14108 26801;26802 26801 0.14360667413507144 LIKQQSIAA 9 Unmodified _LIKQQSIAA_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|7|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|8|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|2|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MSMS UPN47_class_I_Rep_1 2 486.29803466796875 2 486.297842 970.581131 0.0067445 3.2798E-06 0.090349 4.3937E-05 0.097094 4.7216E-05 486.29792566870947 50.489 0.53085 54.118 53.846 54.376 3.6285 38 23 2 0 0 0 0.24936 1 11080 11080 17.113 0 1 95542 22582 1018 14100 14109 26803 26803 0.09466333339935318 LIKQQSIAA 9 Unmodified _LIKQQSIAA_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|7|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|8|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|2|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MSMS UPN47_class_I_Rep_3 4 486.29754638671875 2 486.297842 970.581131 0.23997 0.0001167 -0.57806 -0.00028111 -0.33809 -0.00016441 486.2975313415004 50.922 0.63685 54.138 53.816 54.453 3.2163 43 31 2 0 0 0 0.32682 2 11272 11272;11329 12.241 0 1 111240 22583 1018 14100 14109 26804;26805 26804 0.09466333339935318 LIKRHRWA 8 Unmodified _LIKRHRWA_ 0 0 0 L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|75|2|sense L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|75|2|sense L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|75|2|sense MSMS UPN46_class_I_Rep_3 1 540.3344116210938 2 540.332885 1078.65122 NaN NaN NaN NaN NaN NaN NaN 83.192 1 83.192 82.692 83.692 0 0 0 0 0.40738 1 19747 19747 0.79363 0 1 22584 14831 14101 14110 26806 26806 0.11503676519077999 LIKTFTCQKM 10 Unmodified _LIKTFTCQKM_ 0 0 0 L1MC5a_dup11019|chr10:124633188-124633960:+|1.0820228552531814|0.1484507888046748|2.87|151.0|33|3|sense L1MC5a_dup11019|chr10:124633188-124633960:+|1.0820228552531814|0.1484507888046748|2.87|151.0|33|3|sense L1MC5a_dup11019|chr10:124633188-124633960:+|1.0820228552531814|0.1484507888046748|2.87|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 404.7924499511719 3 404.887489 1211.64064 NaN NaN NaN NaN NaN NaN NaN 114.86 1 118.34 117.84 118.84 3.4802 0 0 0 0.53105 1 28224 28224 0.62683 0 1 22585 11708 14102 14111 26807 26807 0.043281449674395844 LIKTPKKT 8 Unmodified _LIKTPKKT_ 0 0 0 REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|118|2|anti-sense REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|118|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 464.8128662109375 2 464.813128 927.611703 -0.34898 -0.00016221 0.048401 2.2497E-05 -0.30058 -0.00013971 464.8131169571186 31.286 0.58978 35.015 34.841 35.431 3.7293 49 43 2 0 0 0 0.82752 1 5242 5242 10.824 0 1 70240 + 22586 28651 14103 14112 26808 26808 0.1450011172498762 LIKTPKKT 8 Unmodified _LIKTPKKT_ 0 0 0 REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|118|2|anti-sense REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|118|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 464.813128 927.611703 -0.39405 -0.00018316 -0.00064863 -3.0149E-07 -0.3947 -0.00018346 464.81298347013217 31.607 0.60941 35.076 34.903 35.513 3.4691 -0.027186 3.2417E-06 NaN 10.824 57 46 2 NaN NaN NaN NaN 0 NaN NaN 0 79641 + 22587 28651 14103 14112 0.1450011172498762 LIKTPKKT 8 Unmodified _LIKTPKKT_ 0 0 0 REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|118|2|anti-sense REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|118|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 464.813128 927.611703 -0.68233 -0.00031716 -0.066648 -3.0979E-05 -0.74898 -0.00034814 464.8130922039755 31.92 0.53801 35.219 34.938 35.476 3.2991 0.11549 -5.8113E-05 NaN 10.824 60 42 2 NaN NaN NaN NaN 0 NaN NaN 0 58836 + 22588 28651 14103 14112 0.1450011172498762 LIKVCSRSI 9 Unmodified _LIKVCSRSI_ 0 0 0 L1ME1_dup23155|chr12:116254760-116255801:+|2.7523632902741624|0.0051075276361487|9.07|151.0|1|1|sense L1ME1_dup23155|chr12:116254760-116255801:+|2.7523632902741624|0.0051075276361487|9.07|151.0|1|1|sense L1ME1_dup23155|chr12:116254760-116255801:+|2.7523632902741624|0.0051075276361487|9.07|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.8060302734375 2 509.807519 1017.60049 0.30063 0.00015326 -3.6602 -0.001866 -3.3596 -0.0017127 509.8052793439977 42.817 0.15408 42.817 42.741 42.895 0 21 16 2 0 0 0 0.24936 1 8489 8489 17.113 1.3447 1 211790 22589 12309 14104 14113 26809 26809 0.09238966359214373 LIKVKPTI 8 Unmodified _LIKVKPTI_ 0 0 0 REV__LTR37B_dup1186|chrX:19827930-19828377:+|1.253169287506126|0.0074061964011144|7.4|151.0|11|2|sense REV__LTR37B_dup1186|chrX:19827930-19828377:+|1.253169287506126|0.0074061964011144|7.4|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.3179931640625 2 456.318046 910.621539 -0.70085 -0.00031981 0.28444 0.0001298 -0.41641 -0.00019001 456.3180798474386 36.706 1.0318 39.953 39.577 40.608 3.247 116 72 2 0 0 0 0.82752 1 7099 7099 0.69038 0 1 149520 + 22590 30910 14105 14114 26810 26810 0.16265299730378047 LILDLLLLKKK 11 Unmodified _LILDLLLLKKK_ 0 0 0 HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN47_class_I_Rep_3 4 437.31048583984375 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 113.47 1 116.97 116.47 117.47 3.4963 0 0 0 0.38417 1 27834 27834 0.094841 0 1 22591 8122 14106 14115 26811 26811 0.26874564566833214 LILEELGPV 9 Unmodified _LILEELGPV_ 0 0 0 REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.7957763671875 2 491.794601 981.574648 0.33405 0.00016428 3.2304 0.0015887 3.5645 0.001753 491.79625947412734 60.68 0.088367 64.159 64.133 64.221 3.4785 15 9 2 0 0 0 0.26948 1 13430 13430 15.847 0 1 106260 + 22592 25621 14107 14116 26812 26812 0.08312395388577443 LILEELGPV 9 Unmodified _LILEELGPV_ 0 0 0 REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.79791259765625 2 491.794601 981.574648 0.33194 0.00016325 3.4084 0.0016762 3.7403 0.0018395 491.79662556288713 60.924 0.18109 64.403 64.27 64.451 3.4785 26 16 2 0 0 0 0.18929 1 13490 13490 21.747 0 1 104570 + 22593 25621 14107 14116 26813 26813 0.08312395388577443 LILEELGPV 9 Unmodified _LILEELGPV_ 0 0 0 REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense MSMS UPN48_class_I_Rep_3 7 491.7962951660156 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 60.603 1 64.116 63.616 64.616 3.5129 0 0 0 0.11494 1 13329 13329 21.747 0 1 + 22594 25621 14107 14116 26814 26814 0.08312395388577443 LILEELGPV 9 Unmodified _LILEELGPV_ 0 0 0 REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 491.794601 981.574648 0.33405 0.00016428 3.2304 0.0015887 3.5645 0.001753 491.79625947412734 60.68 0.088367 64.159 64.133 64.221 3.4785 0.092321 -2.6463E-05 NaN 15.847 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 106260 + 22595 25621 14107 14116 0.08312395388577443 LILEELGPV 9 Unmodified _LILEELGPV_ 0 0 0 REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense REV__L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|41|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 491.794601 981.574648 0.23423 0.00011519 3.2768 0.0016115 3.511 0.0017267 491.7962971198879 60.457 0.10983 63.974 63.901 64.011 3.5169 -0.092321 1.9132E-05 NaN 15.847 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 122300 + 22596 25621 14107 14116 0.08312395388577443 LILFDEAR 8 Unmodified _LILFDEAR_ 0 0 0 nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1 nc|ENSG00000001631|O00522-2|KRIT1 nc|ENSG00000001631|O00522-2|KRIT1 MULTI-MSMS UPN48_class_I_Rep_1 5 488.7767639160156 2 488.776742 975.538931 0.19177 9.373E-05 -0.11916 -5.8242E-05 0.072607 3.5488E-05 488.776614908959 71.568 0.5767 75.034 74.793 75.37 3.466 110 51 3 0 0 0 0.82752 1 16686 16686 2.5775 0 1 258090 22597 671 14108 14117 26815 26815 0.05018357931567152 LILILLRFP 9 Unmodified _LILILLRFP_ 0 0 0 Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|123|2|anti-sense Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|123|2|anti-sense Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|123|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 548.8351440429688 2 549.375895 1096.73724 0.42829 0.00023529 -2.892 -0.0015888 -2.4637 -0.0013535 549.3752122045936 109.45 0.033707 113.12 113.1 113.13 3.67 6 4 2 0 0 0 0.12444 1 25990 25990 2.0598 0 1 359010 22598 33006 14109 14118 26816 26816 0.19273823581215765 LILKDVYY 8 Unmodified _LILKDVYY_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|84|2|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|84|2|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|84|2|sense MSMS UPN47_class_I_Rep_3 4 513.7978515625 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 102.2 1 105.69 105.19 106.19 3.4873 0 0 0 0.40738 1 25137 25137 0.79363 0 1 22599 8086 14110 14119 26817 26817 0.067966992511856 LILKFIRKYK 10 Unmodified _LILKFIRKYK_ 0 0 0 L1M5_dup37481|chr11:73073874-73074195:+|1.1760872343104596|0.0068584110733172|7.42|151.0|1|1|sense L1M5_dup37481|chr11:73073874-73074195:+|1.1760872343104596|0.0068584110733172|7.42|151.0|1|1|sense L1M5_dup37481|chr11:73073874-73074195:+|1.1760872343104596|0.0068584110733172|7.42|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 441.29754638671875 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 71.588 1 75.115 74.615 75.615 3.5266 0 0 0 0.53105 1 16636 16636 0.77653 0 1 22600 9150 14111 14120 26818 26818 0.21696544455426192 LILKFIRKYK 10 Unmodified _LILKFIRKYK_ 0 0 0 L1M5_dup37481|chr11:73073874-73074195:+|1.1760872343104596|0.0068584110733172|7.42|151.0|1|1|sense L1M5_dup37481|chr11:73073874-73074195:+|1.1760872343104596|0.0068584110733172|7.42|151.0|1|1|sense L1M5_dup37481|chr11:73073874-73074195:+|1.1760872343104596|0.0068584110733172|7.42|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 441.29718017578125 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 72.008 1 75.535 75.035 76.035 3.5266 0 0 0 0.53105 1 16758 16758 0.15932 0 1 22601 9150 14111 14120 26819 26819 0.21696544455426192 LILKLFARF 9 Unmodified _LILKLFARF_ 0 0 0 L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|111|2|anti-sense L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|111|2|anti-sense L1M4_dup10687|chrX:44903074-44905016:-|5.058372434014124|0.0216836745108883|7.87|151.0|111|2|anti-sense MSMS UPN48_class_I_Rep_2 6 560.8115844726562 2 560.865695 1119.71684 NaN NaN NaN NaN NaN NaN NaN 44.943 1 48.705 48.205 49.205 3.7617 0 0 0 0.4007 1 8624 8624 0.52476 0.066424 1 22602 8821 14112 14121 26820 26820 0.16176652921399182 LILKPVPADQ 10 Unmodified _LILKPVPADQ_ 0 0 0 ENSG00000074657|ENST00000591808|ZNF532 ENSG00000074657|ENST00000591808|ZNF532 ENSG00000074657|ENST00000591808|ZNF532 MSMS UPN48_class_I_Rep_2 6 547.333251953125 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 115.62 1 119.28 118.78 119.78 3.6607 0 0 0 0.53105 1 27679 27679 0.35063 0 1 22603 1131 14113 14122 26821 26821 0.11167462062553568 LILKQAKDLDS 11 Unmodified _LILKQAKDLDS_ 0 0 0 L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|43|1|sense L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|43|1|sense L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|43|1|sense MSMS UPN48_class_I_Rep_2 6 622.3644409179688 2 622.366453 1242.71835 NaN NaN NaN NaN NaN NaN NaN 64.747 1 68.226 67.726 68.726 3.4792 0 0 0 0.38417 1 14663 14663 0.96228 0.43751 1 22604 8634 14114 14123 26822 26822 0.10670197428839856 LILKRFTLPL 10 Unmodified _LILKRFTLPL_ 0 0 0 REV__L1MB4_dup4057|chr8:140134541-140135777:+|1.4553209896969832|0.0176297553556183|6.37|151.0|64|1|anti-sense REV__L1MB4_dup4057|chr8:140134541-140135777:+|1.4553209896969832|0.0176297553556183|6.37|151.0|64|1|anti-sense MSMS UPN46_class_I_Rep_3 1 405.2728576660156 3 405.272548 1212.79581 NaN NaN NaN NaN NaN NaN NaN 56.893 1 56.893 56.393 57.393 0 0 0 0 0.53105 1 12436 12436 4.1895 1.4543 1 + 22605 25971 14115 14124 26823 26823 0.19792880155728199 LILLCLVHTKI 11 Unmodified _LILLCLVHTKI_ 0 0 0 REV__HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|6|1|sense REV__HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 633.3693237304688 2 633.404327 1264.7941 NaN NaN NaN NaN NaN NaN NaN 90.85 1 94.312 93.812 94.812 3.4613 0 0 0 0.38417 1 22518 22518 1.1933 0 1 + 22606 23685 14116 14125 26824 26824 0.17229503075441244 LILLILRFMII 11 Unmodified _LILLILRFMII_ 0 0 0 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 MSMS UPN47_class_I_Rep_1 2 453.30499267578125 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 115.8 1 119.4 118.9 119.9 3.5943 0 0 0 0.38417 1 28662 28662 0.094841 0 1 + 22607 19089 14117 14126 26825 26825 0.22891526040325516 LILLILRFMII 11 Unmodified _LILLILRFMII_ 0 0 0 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 MSMS UPN47_class_I_Rep_1 2 453.30517578125 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 116.36 1 119.97 119.47 120.47 3.6036 0 0 0 0.38417 1 28815 28815 0.094841 0 1 + 22608 19089 14117 14126 26826 26826 0.22891526040325516 LILLILRFMII 11 Unmodified _LILLILRFMII_ 0 0 0 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 MSMS UPN47_class_I_Rep_2 3 453.3058166503906 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 117.41 1 120.9 120.4 121.4 3.4891 0 0 0 0.38417 1 28695 28695 0.094841 0 1 + 22609 19089 14117 14126 26827 26827 0.22891526040325516 LILLILRFMII 11 Unmodified _LILLILRFMII_ 0 0 0 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 MSMS UPN48_class_I_Rep_1 5 453.3055725097656 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 111.6 1 115.24 114.74 115.74 3.6326 0 0 0 0.38417 1 27074 27074 0.094841 0 1 + 22610 19089 14117 14126 26828 26828 0.22891526040325516 LILLQILVK 9 Unmodified _LILLQILVK_ 0 0 0 L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|152|2|anti-sense L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|152|2|anti-sense L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|152|2|anti-sense MSMS UPN47_class_I_Rep_2 3 526.8742065429688 2 526.875728 1051.7369 NaN NaN NaN NaN NaN NaN NaN 98.424 1 101.91 101.41 102.41 3.4897 0 0 0 0.35339 1 24134 24134 7.9102 2.6795 1 22611 12432 14118 14127 26829 26829 0.21310403861366467 LILLVVKDRW 10 Unmodified _LILLVVKDRW_ 0 0 0 REV__L1ME3A_dup12699|chr15:55337650-55338185:+|1.4776127284360114|0.2787246601031863|2.41|151.0|7|1|sense REV__L1ME3A_dup12699|chr15:55337650-55338185:+|1.4776127284360114|0.2787246601031863|2.41|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 628.2294311523438 2 627.900266 1253.78598 NaN NaN NaN NaN NaN NaN NaN 58.335 1 58.335 57.835 58.835 0 0 0 0 0.53105 1 12833 12833 0.35063 0 1 + 22612 27991 14119 14128 26830 26830 0.169236921502943 LILNPPHVF 9 Unmodified _LILNPPHVF_ 0 0 0 REV__ENST00000375311.1_1_10:31138210-31139252:-|nuORF REV__ENST00000375311.1_1_10:31138210-31139252:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.8135986328125 2 525.310752 1048.60695 0.33108 0.00017392 1.8474 0.00097045 2.1785 0.0011444 525.3118792338436 75.072 0.48578 78.562 78.147 78.632 3.49 81 47 3 0 0 0 0.32219 1 17741 17741 12.532 12.532 1 372900 + 22613 22009 14120 14129 26831 26831 0.08459227582216045 LILPYVAVT 9 Unmodified _LILPYVAVT_ 0 0 0 REV__MamRep38_dup272|chr2:181486385-181486650:+|1.7955405013449832|0.0975206213806453|4.2|151.0|3|2|sense REV__MamRep38_dup272|chr2:181486385-181486650:+|1.7955405013449832|0.0975206213806453|4.2|151.0|3|2|sense MSMS UPN47_class_I_Rep_3 4 494.8057861328125 2 494.807511 987.600469 NaN NaN NaN NaN NaN NaN NaN 75.172 1 78.418 77.918 78.918 3.2464 0 0 0 0.36505 1 18634 18634 7.2892 2.96 1 + 22614 31053 14121 14130 26832 26832 0.10617289630840787 LILQKYKRLFK 11 Unmodified _LILQKYKRLFK_ 0 0 0 L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|31|1|sense L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|31|1|sense L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|31|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 484.3004150390625 3 483.981657 1448.92314 0.11044 5.3449E-05 -1.4895 -0.0007209 -1.3791 -0.00066745 483.98095366952276 55.288 0.14185 58.466 58.401 58.543 3.1779 12 8 2 0 0 0 22.551 1 12610 12610 0.45452 0.35968 1 63435 22615 15042 14122 14131 26833 26833 0.216636010298771 LILRKACR 8 Unmodified _LILRKACR_ 0 0 0 REV__Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|33|2|sense REV__Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|33|2|sense MSMS UPN47_class_I_Rep_2 3 486.7716064453125 2 486.810396 971.60624 NaN NaN NaN NaN NaN NaN NaN 69.396 1 72.672 72.172 73.172 3.2761 0 0 0 0.40746 1 16850 16850 0.69038 0 1 + 22616 32440 14123 14132 26834 26834 0.11930109661523147 LILVFPPLHFL 11 Unmodified _LILVFPPLHFL_ 0 0 0 REV__L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|211|1|anti-sense REV__L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|211|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.2676086425781 3 436.940798 1307.80057 -0.049523 -2.1639E-05 -1.8562 -0.00081104 -1.9057 -0.00083268 436.9396142370507 49.633 0.38642 53.158 52.828 53.214 3.5246 27 21 2 0 0 0 0.65186 1 10020 10020 3.0723 1.6171 1 108020 + 22617 26334 14124 14133 26835 26835 0.1589776429846097 LILVIHEH 8 Unmodified _LILVIHEH_ 0 0 0 L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|130|3|anti-sense L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|130|3|anti-sense L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|130|3|anti-sense MSMS UPN46_class_I_Rep_3 1 487.2939758300781 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 86.089 1 86.089 85.589 86.589 0 0 0 0 0.40738 1 20571 20571 0.79363 0 1 22618 14041 14125 14134 26836 26836 0.0882665454812468 LILVVLGPG 9 Unmodified _LILVVLGPG_ 0 0 0 L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|167|2|anti-sense L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|167|2|anti-sense L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|167|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7998352050781 2 440.796946 879.57934 0.19742 8.702E-05 2.085 0.00091908 2.2825 0.0010061 440.79943313987894 74.231 0.15498 77.781 77.709 77.864 3.5505 31 20 2 0 0 0 0.50015 1 17399 17399 0.6015 0 1 119210 22619 13929 14126 14135 26837 26837 0.1347332432201256 LILWPFPH 8 Unmodified _LILWPFPH_ 0 0 0 Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|109|2|anti-sense Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|109|2|anti-sense Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|109|2|anti-sense MSMS UPN48_class_I_Rep_3 7 511.72174072265625 2 511.794738 1021.57492 NaN NaN NaN NaN NaN NaN NaN 19.424 1 23.046 22.546 23.546 3.6215 0 0 0 0.40738 1 1463 1463 0.79363 0 1 22620 32980 14127 14136 26838 26838 0.06499859899088278 LIMLIVMK 8 Unmodified _LIMLIVMK_ 0 0 0 REV__Tigger3b_dup5397|chr14:102605408-102605921:+|1.814612122640716|0.0055990668599247|8.34|151.0|19|3|sense REV__Tigger3b_dup5397|chr14:102605408-102605921:+|1.814612122640716|0.0055990668599247|8.34|151.0|19|3|sense MSMS UPN48_class_I_Rep_3 7 480.7701721191406 2 480.80286 959.591167 NaN NaN NaN NaN NaN NaN NaN 20.341 1 24.008 23.508 24.508 3.6667 0 0 0 0.40581 1 1710 1710 2.8892 0 1 + 22621 30688 14128 14137 26839 26839 0.1097548174932399 LIMPIMKRV 9 Unmodified _LIMPIMKRV_ 0 0 0 REV__ENST00000345122.7_1_14:32546498-32559780:+|nuORF REV__ENST00000345122.7_1_14:32546498-32559780:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 550.8370361328125 2 550.837765 1099.66098 -0.33701 -0.00018564 -0.70614 -0.00038897 -1.0432 -0.00057461 550.8374097716161 20.403 0.71572 23.752 23.447 24.163 3.3496 102 61 2 0 0 0 0.50088 1 2172 2172 0.52476 0 1 76670 + 22622 21843 14129 14138 26840 26840 0.11513360417939111 LIMVKYLF 8 Unmodified _LIMVKYLF_ 0 0 0 L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|284|2|anti-sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|284|2|anti-sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|284|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.8070678710938 2 513.806457 1025.59836 0.26905 0.00013824 -0.10721 -5.5087E-05 0.16183 8.315E-05 513.8065919923762 66.789 0.23699 69.974 69.782 70.019 3.1853 25 17 2 0 0 0 0.82752 1 16097 16097 5.7604 0 1 499980 22623 15180 14130 14139 26841 26841 0.08658537621386131 LIMYVANN 8 Unmodified _LIMYVANN_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MULTI-MSMS UPN47_class_I_Rep_1 2 469.2443542480469 2 469.244221 936.473888 -0.34921 -0.00016387 0.17058 8.0044E-05 -0.17863 -8.3822E-05 469.2443058683938 28.668 0.73274 32.435 32.096 32.828 3.7662 91 63 2 0 0 0 0.82752 1 4515 4515 2.5775 0.27475 1 94587 + 22624 17910 14131 14140 26842 26842 0.0031104013405638398 LINFYLKL 8 Unmodified _LINFYLKL_ 0 0 0 L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|13|2|anti-sense;L1MD3_dup1503|chr5:70988371-70988607:+|1.2728585042493652|0.1097612184482281|3.54|148.0|13|2|anti-sense L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|13|2|anti-sense L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|13|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 512.253662109375 2 512.315503 1022.61645 0.023875 1.2231E-05 -4.0338 -0.0020666 -4.01 -0.0020544 512.3135842652046 47.257 0.11272 50.952 50.876 50.989 3.6951 12 9 2 0 0 0 0.72333 1 10101 10101 5.7604 0 1 60815 22625 12058 14132 14141 26843 26843 0.10604995867731759 LINGWHTV 8 Unmodified _LINGWHTV_ 0 0 0 LTR55_dup304|chr12:104532573-104532945:+|2.542489402669993|0.0025908828824054|9.94|151.0|18|2|anti-sense LTR55_dup304|chr12:104532573-104532945:+|2.542489402669993|0.0025908828824054|9.94|151.0|18|2|anti-sense LTR55_dup304|chr12:104532573-104532945:+|2.542489402669993|0.0025908828824054|9.94|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_1 2 470.2543029785156 2 470.255977 938.497401 NaN NaN NaN NaN NaN NaN NaN 24.399 1 28.129 27.629 28.629 3.7298 0 0 0 0.3458 1 3182 3182 23.148 2.2772 1 22626 15678 14133 14142 26844 26844 0.02569221962892243 LINNKIHFP 9 Unmodified _LINNKIHFP_ 0 0 0 REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|42|1|anti-sense REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.8351440429688 2 548.319109 1094.62366 0.54129 0.0002968 -0.069084 -3.788E-05 0.4722 0.00025892 548.3177419169976 110.74 0.032013 114.32 114.3 114.34 3.5835 4 2 2 0 0 0 0.45688 1 27305 27305 4.756 0 1 48751 + 22627 27124 14134 14143 26845 26845 0.08013728468154113 LINNKIHFP 9 Unmodified _LINNKIHFP_ 0 0 0 REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|42|1|anti-sense REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|42|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 548.319109 1094.62366 0.54129 0.0002968 -0.069084 -3.788E-05 0.4722 0.00025892 548.3177419169976 110.74 0.032013 114.32 114.3 114.34 3.5835 0.005162 -0.00065631 NaN 4.756 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 48751 + 22628 27124 14134 14143 0.08013728468154113 LINNKIHFP 9 Unmodified _LINNKIHFP_ 0 0 0 REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|42|1|anti-sense REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|42|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 548.319109 1094.62366 0.6148 0.00033711 1.143 0.00062674 1.7578 0.00096385 548.8220556016545 110.78 0.022377 114.31 114.3 114.32 3.5271 -0.005162 0.00067293 NaN 4.756 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 31703 + 22629 27124 14134 14143 0.08013728468154113 LINRAKKVA 9 Unmodified _LINRAKKVA_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS UPN48_class_I_Rep_3 7 506.83489990234375 2 506.834926 1011.6553 0.12709 6.4412E-05 -0.1361 -6.8982E-05 -0.0090159 -4.5696E-06 506.8347589365335 53.609 1.1164 57.193 56.498 57.615 3.5836 154 81 3 0 0 0 0.40174 1 11205 11205 7.9102 0 1 391240 22630 901 14135 14144 26846 26846 0.1499372122211753 LINVFIIYL 9 Unmodified _LINVFIIYL_ 0 0 0 L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.3446044921875 2 554.344261 1106.67397 0.43091 0.00023887 -0.18122 -0.00010046 0.24969 0.00013841 554.3440264006841 72.637 1.0064 75.934 75.622 76.629 3.2971 168 85 3 0 0 0 0.32219 1 17988 17988 12.532 0 1 305930 22631 13341 14136 14145 26847 26847 0.12489838073315696 LINYNGLKL 9 Unmodified _LINYNGLKL_ 0 0 0 REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|34|1|sense REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|34|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.7710571289062 2 524.313492 1046.61243 -0.21211 -0.00011121 -0.40426 -0.00021196 -0.61637 -0.00032317 524.3131019805975 44.268 0.74462 47.623 47.196 47.94 3.3556 66 45 2 0 0 0 0.46869 1 9115 9115 3.9444 0.94915 1 112510 + 22632 23811 14137 14146 26848 26848 0.09098906374038052 LINYVGPK 8 Unmodified _LINYVGPK_ 0 0 0 L1MA3_dup3117|chr5:103139402-103140567:+|1.4025035053440873|0.048269560892178|4.86|151.0|80|3|anti-sense L1MA3_dup3117|chr5:103139402-103140567:+|1.4025035053440873|0.048269560892178|4.86|151.0|80|3|anti-sense L1MA3_dup3117|chr5:103139402-103140567:+|1.4025035053440873|0.048269560892178|4.86|151.0|80|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2690734863281 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 33.857 1 33.857 33.357 34.357 0 0 0 0 0.40625 1 5974 5974 2.3027 0 1 22633 9521 14138 14147 26849 26849 0.06739276765483737 LIPEITDC 8 Unmodified _LIPEITDC_ 0 0 0 REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.2281799316406 2 452.228236 902.44192 0.19113 8.6434E-05 -0.04711 -2.1304E-05 0.14402 6.513E-05 452.22804746913454 100.51 0.45062 100.51 100.27 100.72 0 110 51 3 0 0 0 0.82752 1 24471 24471 0.79363 0 1 526770 + 22634 22119 14139 14148 26850 26850 -0.013203723397623435 LIPEITDC 8 Unmodified _LIPEITDC_ 0 0 0 REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 452.228236 902.44192 0.19113 8.6434E-05 -0.04711 -2.1304E-05 0.14402 6.513E-05 452.22804746913454 100.51 0.45062 100.51 100.27 100.72 0 0.16613 -0.00028254 NaN 0.79363 110 51 3 NaN NaN NaN NaN 0 NaN NaN 0 526770 + 22635 22119 14139 14148 -0.013203723397623435 LIPEITDC 8 Unmodified _LIPEITDC_ 0 0 0 REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 452.228236 902.44192 0.15671 7.0867E-05 0.32524 0.00014708 0.48194 0.00021795 452.22822841204004 96.362 0.96703 100.14 99.757 100.72 3.7804 -0.20416 5.4231E-05 NaN 0.79363 275 127 3 NaN NaN NaN NaN 0 NaN NaN 0 2211800 + 22636 22119 14139 14148 -0.013203723397623435 LIPEITDC 8 Unmodified _LIPEITDC_ 0 0 0 REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF REV__ENST00000396056.6_1_3:44700855-44701443:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 452.228236 902.44192 0.16946 7.6635E-05 0.28982 0.00013107 0.45929 0.0002077 452.22822827000505 96.421 0.97196 100.33 99.933 100.9 3.9084 -0.01721 2.2204E-05 NaN 0.79363 293 133 3 NaN NaN NaN NaN 0 NaN NaN 0 2738300 + 22637 22119 14139 14148 -0.013203723397623435 LIPFQKQIY 9 Unmodified _LIPFQKQIY_ 0 0 0 REV__ENSG00000099937|ENST00000215727|SERPIND1 REV__ENSG00000099937|ENST00000215727|SERPIND1 MULTI-MSMS UPN48_class_I_Rep_3 7 575.2738037109375 2 575.336967 1148.65938 0.53393 0.00030719 0.65904 0.00037917 1.193 0.00068636 575.3374826736857 70.243 0.1315 73.756 73.677 73.808 3.5128 12 9 2 0 0 0 0.46869 1 16226 16226 3.9444 0 1 60624 + 22638 18076 14140 14149 26851 26851 0.09099765925202519 LIPFSCHAWPV 11 Unmodified _LIPFSCHAWPV_ 0 0 0 REV__LTR5B_dup343|chr19:11889618-11890605:-|3.1131087178465444|0.0879464445199657|5.15|151.0|30|3|sense REV__LTR5B_dup343|chr19:11889618-11890605:-|3.1131087178465444|0.0879464445199657|5.15|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 635.3267211914062 2 635.326076 1268.6376 NaN NaN NaN NaN NaN NaN NaN 51.676 1 51.676 51.176 52.176 0 0 0 0 0.38417 1 11001 11001 1.3295 0.13619 1 + 22639 30982 14141 14150 26852 26852 0.014026379049482784 LIPKAKHIKTK 11 Unmodified _LIPKAKHIKTK_ 0 0 0 L1MA8_dup333|chr1:147300434-147303090:+|1.4439430619558666|0.0227604278159588|5.99|151.0|31|2|sense L1MA8_dup333|chr1:147300434-147303090:+|1.4439430619558666|0.0227604278159588|5.99|151.0|31|2|sense L1MA8_dup333|chr1:147300434-147303090:+|1.4439430619558666|0.0227604278159588|5.99|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 638.9264526367188 2 638.926815 1275.83908 NaN NaN NaN NaN NaN NaN NaN 42.131 1 45.639 45.139 46.139 3.5079 0 0 0 0.38417 1 7758 7758 0 0 1 22640 10051 14142 14151 26853 26853 0.21219069932931234 LIPKKYVDLL 10 Unmodified _LIPKKYVDLL_ 0 0 0 REV__L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|37|2|sense REV__L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|37|2|sense MSMS UPN46_class_I_Rep_3 1 601.3794555664062 2 601.381374 1200.7482 NaN NaN NaN NaN NaN NaN NaN 97.991 1 97.991 97.491 98.491 0 0 0 0 0.53105 1 23855 23855 1.4819 0.95714 1 + 22641 28671 14143 14152 26854 26854 0.15585181164851747 LIPNENICYM 10 Unmodified _LIPNENICYM_ 0 0 0 ENST00000547081.1_1_12:107350789-107350834:+|nuORF ENST00000547081.1_1_12:107350789-107350834:+|nuORF ENST00000547081.1_1_12:107350789-107350834:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 605.2860717773438 2 605.28576 1208.55697 0.52601 0.00031839 -0.36367 -0.00022012 0.16234 9.8263E-05 605.2857909848051 54.515 0.25042 54.515 54.343 54.593 0 58 26 3 0 0 0 0.48573 1 11803 11803 13.042 2.2185 1 412210 22642 7382 14144 14153 26855 26855 -0.03897011200274392 LIPQTPVWP 9 Unmodified _LIPQTPVWP_ 0 0 0 L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|87|2|anti-sense L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|87|2|anti-sense L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|87|2|anti-sense MSMS UPN48_class_I_Rep_2 6 525.805419921875 2 525.80276 1049.59097 NaN NaN NaN NaN NaN NaN NaN 39.999 1 43.74 43.24 44.24 3.7413 0 0 0 0.39326 1 7159 7159 2.3027 0.4585 1 22643 11642 14145 14154 26856 26856 0.06815521345333764 LIPWMIPL 8 Unmodified _LIPWMIPL_ 0 0 0 REV__L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|48|2|anti-sense REV__L1PA7_dup4894|chr5:177659623-177660787:+|1.6667432962060167|0.0644567245898206|4.69|151.0|48|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 491.2920837402344 2 491.793349 981.572146 0.28355 0.00013945 0.69196 0.0003403 0.97552 0.00047975 491.793687621871 80.695 0.05555 80.695 80.643 80.699 0 11 6 2 0 0 0 0.72333 1 19012 19012 0.79363 0.10326 1 326980 + 22644 30111 14146 14155 26857 26857 0.08062268449907606 LIQARRQKRKH 11 Unmodified _LIQARRQKRKH_ 0 0 0 REV__L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|31|2|sense REV__L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 478.63714599609375 3 478.635654 1432.88513 NaN NaN NaN NaN NaN NaN NaN 65.888 1 69.34 68.84 69.84 3.4516 0 0 0 0.38417 1 15024 15024 1.1098 0.48293 1 + 22645 28536 14147 14156 26858 26858 0.18600527887770113 LIQHHRVHSS 10 Unmodified _LIQHHRVHSS_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|51|1|anti-sense;L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|69|3|anti-sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|51|1|anti-sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|51|1|anti-sense MSMS UPN46_class_I_Rep_3 1 607.3255004882812 2 607.33107 1212.64759 NaN NaN NaN NaN NaN NaN NaN 48.56 1 48.56 48.06 49.06 0 0 0 0 0.53105 1 10128 10128 2.9952 0 1 22646 11364 14148 14157 26859 26859 0.049769619545713795 LIQLEEEI 8 Unmodified _LIQLEEEI_ 0 0 0 L1MDa_dup4617|chr10:52710936-52711586:-|1.5475462040104593|0.0013513451412759|10.16|144.0|13|2|sense L1MDa_dup4617|chr10:52710936-52711586:-|1.5475462040104593|0.0013513451412759|10.16|144.0|13|2|sense L1MDa_dup4617|chr10:52710936-52711586:-|1.5475462040104593|0.0013513451412759|10.16|144.0|13|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 493.7851257324219 2 493.773865 985.533177 0.2796 0.00013806 1.4233 0.00070278 1.7029 0.00084084 493.77456553124574 50.472 0.47581 53.698 53.505 53.981 3.2262 37 27 2 0 0 0 0.72333 1 11185 11185 14.582 0 1 55197 22647 12124 14149 14158 26860 26860 0.039832146292383186 LIQLTEIS 8 Unmodified _LIQLTEIS_ 0 0 0 L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|72|2|anti-sense L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|72|2|anti-sense L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|72|2|anti-sense MSMS UPN47_class_I_Rep_2 3 458.7712707519531 2 458.771126 915.527698 NaN NaN NaN NaN NaN NaN NaN 41.786 1 45.151 44.651 45.651 3.3655 0 0 0 0.33644 1 8456 8456 25.399 0 1 22648 11439 14150 14159 26861 26861 0.06655535837421667 LIQLTEIS 8 Unmodified _LIQLTEIS_ 0 0 0 L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|72|2|anti-sense L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|72|2|anti-sense L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|72|2|anti-sense MSMS UPN47_class_I_Rep_3 4 458.77099609375 2 458.771126 915.527698 NaN NaN NaN NaN NaN NaN NaN 41.727 1 44.964 44.464 45.464 3.2372 0 0 0 0.33644 1 8491 8491 25.399 0 1 22649 11439 14150 14159 26862 26862 0.06655535837421667 LIQPFILLSFY 11 Unmodified _LIQPFILLSFY_ 0 0 0 ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 451.9322814941406 3 451.93208 1352.77441 0.19002 8.5876E-05 0.69546 0.0003143 0.88548 0.00040018 451.93229914368504 93.279 0.18239 93.279 93.164 93.346 0 21 16 2 0 0 0 0.68024 1 22599 22599 0.50596 0.34663 1 175950 22650 6936 14151 14160 26863 26863 0.1121345033632224 LIQPFILLSFY 11 Unmodified _LIQPFILLSFY_ 0 0 0 ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 451.93208 1352.77441 -0.17106 -7.7307E-05 1.012 0.00045734 0.84092 0.00038004 452.26681890034934 89.842 0.098907 93.24 93.183 93.281 3.3976 0.061094 0.00040887 NaN 0.50596 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 72324 22651 6936 14151 14160 0.1121345033632224 LIQPFILLSFY 11 Unmodified _LIQPFILLSFY_ 0 0 0 ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF ENST00000472940.5_1_17:58008327-58013674:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 451.93208 1352.77441 0.018201 8.2256E-06 0.68095 0.00030774 0.69915 0.00031597 451.9323767513323 89.391 0.11499 93.016 92.934 93.049 3.6255 -0.16202 -3.9935E-05 NaN 0.50596 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 59364 22652 6936 14151 14160 0.1121345033632224 LIQTKIKKKF 10 Unmodified _LIQTKIKKKF_ 0 0 0 L1PA16_dup97|chr1:50620207-50620663:-|1.5553818194063278|0.0265811019116447|5.87|151.0|14|3|sense L1PA16_dup97|chr1:50620207-50620663:-|1.5553818194063278|0.0265811019116447|5.87|151.0|14|3|sense L1PA16_dup97|chr1:50620207-50620663:-|1.5553818194063278|0.0265811019116447|5.87|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 623.9169311523438 2 623.915916 1245.81728 NaN NaN NaN NaN NaN NaN NaN 108.12 1 108.12 107.62 108.62 0 0 0 0 0.53105 1 26417 26417 1.4819 0.15237 1 22653 14142 14152 14161 26864 26864 0.20420265184384334 LIREGTIIY 9 Unmodified _LIREGTIIY_ 0 0 0 LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 539.3196411132812 2 539.318774 1076.623 0.3932 0.00021206 0.14337 7.7322E-05 0.53657 0.00028938 539.3187837940013 57.55 0.62842 60.987 60.678 61.307 3.437 77 53 2 0 0 0 0.15122 2 13208 13208;13250 25.399 25.399 1 110480 22654 15705 14153 14162 26865;26866 26865 0.08774889028495636 LIREGTIIY 9 Unmodified _LIREGTIIY_ 0 0 0 LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 539.3184814453125 2 539.318774 1076.623 0.33298 0.00017958 0.2157 0.00011633 0.54868 0.00029591 539.3188870211131 57.825 0.56808 60.993 60.809 61.377 3.1681 57 41 2 0 0 0 0.21527 1 13380 13380 19.257 19.257 1 101250 22655 15705 14153 14162 26867 26867 0.08774889028495636 LIREGTIIY 9 Unmodified _LIREGTIIY_ 0 0 0 LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense LTR71B_dup8|chr1:145189070-145189501:+|1.3793252842693309|0.0872603653394805|3.98|150.0|32|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 539.318774 1076.623 0.47122 0.00025414 -0.17587 -9.4848E-05 0.29535 0.00015929 539.3187149694938 57.897 0.73212 61.188 60.753 61.485 3.2912 0.13245 -0.00023868 NaN 25.399 78 59 2 NaN NaN NaN NaN 0 NaN NaN 0 119270 22656 15705 14153 14162 0.08774889028495636 LIRFWIPFLYY 11 Unmodified _LIRFWIPFLYY_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|159|3|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|159|3|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|159|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7508544921875 3 510.955108 1529.84349 NaN NaN NaN NaN NaN NaN NaN 26.335 1 30.097 29.597 30.597 3.7624 0 0 0 0.38417 1 3753 3753 0.094841 0 1 22657 8565 14154 14163 26868 26868 0.09976534355905642 LIRHYPRC 8 Unmodified _LIRHYPRC_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MSMS UPN47_class_I_Rep_1 2 529.2904052734375 2 529.289828 1056.5651 NaN NaN NaN NaN NaN NaN NaN 70.053 1 73.424 72.924 73.924 3.3713 0 0 0 0.40746 1 17008 17008 0.69038 0 1 + 22658 19776 14155 14164 26869 26869 0.039083486220533814 LIRKHPQHNI 10 Unmodified _LIRKHPQHNI_ 0 0 0 ENST00000466480.1_1_1:114448336-114454776:+|nuORF;ENSG00000118655|ENST00000650450|DCLRE1B ENST00000466480.1_1_1:114448336-114454776:+|nuORF ENST00000466480.1_1_1:114448336-114454776:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.374267578125 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 44.024 1 44.024 43.524 44.524 0 0 0 0 0.53105 1 8837 8837 1.6526 0 1 22659 2258 14156 14165 26870 26870 0.11374698402414651 LIRLPFFPH 9 Unmodified _LIRLPFFPH_ 0 0 0 L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|63|3|anti-sense L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|63|3|anti-sense L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|63|3|anti-sense MSMS UPN46_class_I_Rep_3 1 570.2918701171875 2 570.339844 1138.66514 NaN NaN NaN NaN NaN NaN NaN 40.031 1 40.031 39.531 40.531 0 0 0 0 0.40038 1 7742 7742 0.6015 0 1 22660 9117 14157 14166 26871 26871 0.10134909227508615 LIRLVLNVYC 10 Unmodified _LIRLVLNVYC_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|151|1|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|151|1|anti-sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|151|1|anti-sense MSMS UPN46_class_I_Rep_3 1 402.57464599609375 3 402.57401 1204.7002 NaN NaN NaN NaN NaN NaN NaN 98.785 1 98.785 98.285 99.285 0 0 0 0 0.53105 1 24054 24054 0.15932 0 1 22661 9366 14158 14167 26872 26872 0.10603783973147074 LISASLPASL 10 Unmodified _LISASLPASL_ 0 0 0 L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|97|1|anti-sense L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|97|1|anti-sense L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|97|1|anti-sense MSMS UPN47_class_I_Rep_1 2 486.2917785644531 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 76.598 1 80.013 79.513 80.513 3.4149 0 0 0 0.53105 1 18964 18964 9.3831 0 1 22662 9736 14159 14168 26873 26873 0.08343511245789159 LISDNVRLR 9 Unmodified _LISDNVRLR_ 0 0 0 REV__nc|ENSG00000132535|P78352-3|DLG4 REV__nc|ENSG00000132535|P78352-3|DLG4 MULTI-MSMS UPN48_class_I_Rep_1 5 543.3253173828125 2 543.324922 1084.63529 0.45568 0.00024758 -0.29686 -0.00016129 0.15882 8.629E-05 543.3245706166699 35.219 0.82294 38.733 38.45 39.273 3.5144 166 81 3 0 0 0 0.38714 1 5800 5800 8.7454 0 1 291530 + 22663 19022 14160 14169 26874 26874 0.09635925491488706 LISGLDLVL 9 Unmodified _LISGLDLVL_ 0 0 0 REV__L1PA16_dup98|chr1:50620659-50621383:-|2.6446880926680465|0.0375772531034382|6.14|151.0|37|3|anti-sense REV__L1PA16_dup98|chr1:50620659-50621383:-|2.6446880926680465|0.0375772531034382|6.14|151.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 471.7972106933594 2 471.797143 941.579734 0.13268 6.26E-05 -0.63597 -0.00030005 -0.50329 -0.00023745 471.7967166813857 69.822 1.0491 73.281 72.772 73.821 3.4598 166 80 3 0 0 0 0.26948 1 16172 16172 15.847 1.9411 1 373950 + 22664 29436 14161 14170 26875 26875 0.10660699251184269 LISGLDLVL 9 Unmodified _LISGLDLVL_ 0 0 0 REV__L1PA16_dup98|chr1:50620659-50621383:-|2.6446880926680465|0.0375772531034382|6.14|151.0|37|3|anti-sense REV__L1PA16_dup98|chr1:50620659-50621383:-|2.6446880926680465|0.0375772531034382|6.14|151.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.79693603515625 2 471.797143 941.579734 0.26632 0.00012565 -0.4354 -0.00020542 -0.16908 -7.9772E-05 471.79679398705923 69.593 1.0343 73.106 72.694 73.728 3.5129 173 82 3 0 0 0 0.10817 2 16065 15988;16065 32.305 6.9062 1 558900 + 22665 29436 14161 14170 26876;26877 26877 0.10660699251184269 LISGQRPVN 9 Unmodified _LISGQRPVN_ 0 0 0 ENSG00000248329|ENST00000507152|APELA ENSG00000248329|ENST00000507152|APELA ENSG00000248329|ENST00000507152|APELA MULTI-MSMS UPN46_class_I_Rep_3 1 492.28558349609375 2 492.285266 982.555979 0.30068 0.00014802 0.12359 6.0842E-05 0.42427 0.00020886 492.28524274105934 88.958 0.59859 88.958 88.635 89.234 0 121 64 3 0 0 0 0.48846 1 21336 21336 1.8442 0 1 497550 22666 5731 14162 14171 26878 26878 0.06400278537364557 LISMMLDIF 9 Unmodified _LISMMLDIF_ 0 0 0 L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|51|1|anti-sense L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|51|1|anti-sense L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|51|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.78515625 2 541.784864 1081.55518 0.42014 0.00022763 0.4376 0.00023709 0.85774 0.00046471 541.7849555084539 53.384 0.83575 56.904 56.527 57.362 3.5192 134 60 3 0 0 0 0.46869 1 11101 11101 3.9444 0 1 470360 22667 12170 14163 14172 26879 26879 0.01765979781794158 LISMMLDIF 9 Unmodified _LISMMLDIF_ 0 0 0 L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|51|1|anti-sense L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|51|1|anti-sense L1ME1_dup1067|chr1:96726900-96727997:-|4.102122137314737|0.0289314809795658|7.15|151.0|51|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 542.2871704101562 2 541.784864 1081.55518 0.54488 0.00029521 0.44183 0.00023938 0.98671 0.00053458 541.7849394651498 53.219 0.78662 56.829 56.511 57.297 3.6098 113 50 3 0 0 0 0.33654 1 11208 11208 11.64 0 1 353500 22668 12170 14163 14172 26880 26880 0.01765979781794158 LISNLARR 8 Unmodified _LISNLARR_ 0 0 0 REV__ENSG00000196943|ENST00000267425|NOP9 REV__ENSG00000196943|ENST00000267425|NOP9 MSMS UPN47_class_I_Rep_2 3 471.7963562011719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 50.395 1 53.738 53.238 54.238 3.3431 0 0 0 0.40625 1 11073 11073 2.3027 0 1 + 22669 21059 14164 14173 26881 26881 0.1039228863688777 LISVDCLLS 9 Unmodified _LISVDCLLS_ 0 0 0 REV__L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|131|3|anti-sense REV__L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|131|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7652587890625 2 481.764986 961.515419 0.12067 5.8135E-05 -0.047343 -2.2808E-05 0.073327 3.5327E-05 481.76486995110184 66.272 0.59027 69.531 69.293 69.884 3.2588 57 36 2 0 0 0 0.35081 1 15964 15964 10.824 0 1 115250 + 22670 27963 14165 14174 26882 26882 0.03312176102747344 LITAIQWLV 9 Unmodified _LITAIQWLV_ 0 0 0 L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|68|3|sense L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|68|3|sense L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|68|3|sense MSMS UPN47_class_I_Rep_3 4 528.8272094726562 2 528.826235 1055.63792 NaN NaN NaN NaN NaN NaN NaN 97.53 1 100.95 100.45 101.45 3.4216 0 0 0 0.32573 1 24174 24174 9.3831 2.66 1 22671 14081 14166 14175 26883 26883 0.11232380896467475 LITAIQWLV 9 Unmodified _LITAIQWLV_ 0 0 0 L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|68|3|sense L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|68|3|sense L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|68|3|sense MSMS UPN47_class_I_Rep_3 4 528.8250122070312 2 528.826235 1055.63792 NaN NaN NaN NaN NaN NaN NaN 97.682 1 101.1 100.6 101.6 3.4216 0 0 0 0.15455 1 24207 24207 19.257 2.3147 1 22672 14081 14166 14175 26884 26884 0.11232380896467475 LITDTWISM 9 Oxidation (M) _LITDTWISM(Oxidation (M))_ LITDTWISM(1) LITDTWISM(51) 0 0 1 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MULTI-MSMS UPN46_class_I_Rep_3 1 548.2734985351562 2 548.273175 1094.5318 0.33667 0.00018459 0.26648 0.0001461 0.60315 0.00033069 548.2732094598374 66.918 0.78761 66.918 66.512 67.3 0 196 82 3 0 0 0 0.045397 1 15187 15187 50.855 12.881 1 906640 22673 849 14167 14176 26885 26885 14 -0.011687427311699139 LITDTWISM 9 Oxidation (M) _LITDTWISM(Oxidation (M))_ 0 0 1 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MULTI-MATCH UPN47_class_I_Rep_1 2 2 548.273175 1094.5318 0.41817 0.00022927 4.2686 0.0023404 4.6868 0.0025697 548.7780266674084 63.284 0.17032 66.643 66.543 66.713 3.3595 -0.13716 0.0043775 NaN 50.855 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 47762 22674 849 14167 14176 14 -0.011687427311699139 LITENFKNV 9 Unmodified _LITENFKNV_ 0 0 0 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 MULTI-SECPEP UPN47_class_I_Rep_1 2 538.7993774414062 2 539.300581 1076.58661 0.43415 0.00023414 -0.16371 -8.8287E-05 0.27045 0.00014585 539.3005617242882 80.692 0.16856 84.18 84.035 84.204 3.4874 31 16 2 0 0 0 0.12462 1 20083 20083 1.8442 0 1 185260 22675 952 14168 14177 26886 26886 0.05138012131760661 LITFSDRSF 9 Unmodified _LITFSDRSF_ 0 0 0 REV__AluSx4_dup9004|chr16:69642541-69642845:+|1.334742549993065|0.1215802436542421|3.46|151.0|16|3|anti-sense REV__AluSx4_dup9004|chr16:69642541-69642845:+|1.334742549993065|0.1215802436542421|3.46|151.0|16|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 543.28466796875 2 543.284931 1084.55531 0.41528 0.00022561 -0.23503 -0.00012769 0.18025 9.7927E-05 543.2848414180177 48.875 0.36414 52.504 52.296 52.66 3.6291 43 30 2 0 0 0 0.26468 1 9799 9799 16.149 0 1 86463 + 22676 17195 14169 14178 26887 26887 0.016414390976706272 LITFSDRSF 9 Unmodified _LITFSDRSF_ 0 0 0 REV__AluSx4_dup9004|chr16:69642541-69642845:+|1.334742549993065|0.1215802436542421|3.46|151.0|16|3|anti-sense REV__AluSx4_dup9004|chr16:69642541-69642845:+|1.334742549993065|0.1215802436542421|3.46|151.0|16|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 543.284931 1084.55531 0.40072 0.0002177 0.16776 9.1141E-05 0.56848 0.00030885 543.2850584372846 48.912 0.36487 52.436 52.241 52.606 3.5239 -0.035261 0.00032679 NaN 16.149 35 28 2 NaN NaN NaN NaN 0 NaN NaN 0 83739 + 22677 17195 14169 14178 0.016414390976706272 LITILMRPVVG 11 Unmodified _LITILMRPVVG_ 0 0 0 REV__ENST00000556263.1_1_14:55605083-55607082:+|nuORF REV__ENST00000556263.1_1_14:55605083-55607082:+|nuORF MSMS UPN48_class_I_Rep_3 7 404.5887756347656 3 404.58966 1210.74715 NaN NaN NaN NaN NaN NaN NaN 38.043 1 41.702 41.202 42.202 3.6595 0 0 0 0.38417 1 6488 6488 0.50596 0.09769 1 + 22678 18994 14170 14179 26888 26888 0.15020643524280786 LITMKRYQ 8 Unmodified _LITMKRYQ_ 0 0 0 REV__L1MC4_dup24241|chr21:15023437-15024222:+|1.0853707154906211|0.0165345754507073|6.04|147.0|13|2|sense REV__L1MC4_dup24241|chr21:15023437-15024222:+|1.0853707154906211|0.0165345754507073|6.04|147.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 526.799072265625 2 526.799694 1051.58484 NaN NaN NaN NaN NaN NaN NaN 24.026 1 27.592 27.092 28.092 3.5655 0 0 0 0.40643 1 2589 2589 2.0598 0.40713 1 + 22679 26893 14171 14180 26889 26889 0.06110679842140598 LITQQLQLV 9 Unmodified _LITQQLQLV_ 0 0 0 REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|188|3|anti-sense REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|188|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.8280029296875 2 528.326599 1054.63865 0.43171 0.00022808 -1.3283 -0.00070176 -0.89656 -0.00047367 528.3257528321042 52.637 0.098087 55.842 55.813 55.911 3.2055 17 11 2 0 0 0 0.45441 1 11821 11821 4.897 0 1 179450 + 22680 24172 14172 14181 26890 26890 0.11351175545519254 LITQQLQLV 9 Unmodified _LITQQLQLV_ 0 0 0 REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|188|3|anti-sense REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|188|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 528.326599 1054.63865 0.25398 0.00013418 -1.4468 -0.00076436 -1.1928 -0.00063017 528.8273188610829 52.653 0.041359 55.986 55.962 56.004 3.3332 0.072081 -8.7432E-05 NaN 4.897 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 59687 + 22681 24172 14172 14181 0.11351175545519254 LITSKQKYI 9 Unmodified _LITSKQKYI_ 0 0 0 REV__L1MA8_dup1438|chr2:230453373-230455060:-|2.706792831951424|0.1725445602743921|3.97|151.0|23|2|sense REV__L1MA8_dup1438|chr2:230453373-230455060:-|2.706792831951424|0.1725445602743921|3.97|151.0|23|2|sense MSMS UPN47_class_I_Rep_2 3 547.3330078125 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 81.906 1 85.29 84.79 85.79 3.3839 0 0 0 0.38299 1 20411 20411 4.756 0.81161 1 + 22682 25533 14173 14182 26891 26891 0.11167462062576305 LITTLVFA 8 Unmodified _LITTLVFA_ 0 0 0 REV__ENSG00000179546|ENST00000374619|HTR1D REV__ENSG00000179546|ENST00000374619|HTR1D MSMS UPN48_class_I_Rep_1 5 439.27142333984375 2 439.273304 876.532055 NaN NaN NaN NaN NaN NaN NaN 38.994 1 42.499 41.999 42.999 3.5048 0 0 0 0.40581 1 6829 6829 2.8892 0 1 + 22683 20682 14174 14183 26892 26892 0.08885045050999452 LITTRTRL 8 Unmodified _LITTRTRL_ 0 0 0 REV__ENST00000219837.11_2_16:19717912-19718002:-|nuORF REV__ENST00000219837.11_2_16:19717912-19718002:-|nuORF MSMS UPN46_class_I_Rep_3 1 487.3111572265625 2 487.311284 972.608014 NaN NaN NaN NaN NaN NaN NaN 69.077 1 69.077 68.577 69.577 0 0 0 0 0.40746 1 15809 15809 0.69038 0 1 + 22684 21481 14175 14184 26893 26893 0.12061441951118468 LITTTESGTT 10 Unmodified _LITTTESGTT_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MSMS UPN47_class_I_Rep_1 2 512.2767333984375 2 512.263862 1022.51317 NaN NaN NaN NaN NaN NaN NaN 43.169 1 46.857 46.357 47.357 3.6875 0 0 0 0.53105 1 8850 8850 3.9444 1.0552 1 + 22685 21400 14176 14185 26894 26894 0.002814188986235422 LIVCMICKY 9 Unmodified _LIVCMICKY_ 0 0 0 L1MB7_dup1350|chr1:193062504-193063608:-|1.671496385827833|0.3793316224008751|2.14|151.0|62|2|anti-sense L1MB7_dup1350|chr1:193062504-193063608:-|1.671496385827833|0.3793316224008751|2.14|151.0|62|2|anti-sense L1MB7_dup1350|chr1:193062504-193063608:-|1.671496385827833|0.3793316224008751|2.14|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.7827758789062 2 543.281434 1084.54832 0.43298 0.00023523 -1.082 -0.00058782 -0.649 -0.00035259 543.7823613349784 49.36 0.66562 52.595 52.134 52.8 3.2345 59 39 3 0 0 0 0.48643 1 10867 10867 2.0598 0.21551 1 59046 22686 10700 14177 14186 26895 26895 0.009423436295719512 LIVIFYWKVG 10 Unmodified _LIVIFYWKVG_ 0 0 0 REV__L1MB7_dup12244|chrX:71413193-71413517:-|1.3751746444513242|0.1078491538626494|3.67|151.0|24|3|anti-sense REV__L1MB7_dup12244|chrX:71413193-71413517:-|1.3751746444513242|0.1078491538626494|3.67|151.0|24|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.3693237304688 2 619.37081 1236.72707 0.65366 0.00040485 -0.86439 -0.00053538 -0.21074 -0.00013053 619.3699512124225 96.441 0.041023 96.441 96.411 96.452 0 6 4 2 0 0 0 0.56478 1 23449 23449 0.45834 0 1 87296 + 22687 26127 14178 14187 26896 26896 0.11817215855944596 LIVKKWFVP 9 Unmodified _LIVKKWFVP_ 0 0 0 REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|74|1|anti-sense REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|74|1|anti-sense MSMS UPN47_class_I_Rep_2 3 565.3629150390625 2 565.360245 1128.70594 NaN NaN NaN NaN NaN NaN NaN 63.731 1 66.986 66.486 67.486 3.2556 0 0 0 0.40038 1 15135 15135 0.6015 0.076735 1 + 22688 24974 14179 14188 26897 26897 0.14673250547116368 LIVLGYGPSFY 11 Unmodified _LIVLGYGPSFY_ 0 0 0 REV__L1MC4a_dup7544|chr13:28065973-28067048:+|2.213117779117567|0.0015187697224514|10.51|151.0|5|1|sense REV__L1MC4a_dup7544|chr13:28065973-28067048:+|2.213117779117567|0.0015187697224514|10.51|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 615.3142700195312 2 614.834257 1227.65396 0.41051 0.0002524 -0.3548 -0.00021814 0.055711 3.4253E-05 614.8340937035633 72.651 0.24444 76.031 75.837 76.082 3.3799 29 19 2 0 0 0 22.551 1 17785 17785 18.146 0 1 115000 + 22689 27020 14180 14189 26898 26898 0.04924042342713619 LIVLGYGPSFY 11 Unmodified _LIVLGYGPSFY_ 0 0 0 REV__L1MC4a_dup7544|chr13:28065973-28067048:+|2.213117779117567|0.0015187697224514|10.51|151.0|5|1|sense REV__L1MC4a_dup7544|chr13:28065973-28067048:+|2.213117779117567|0.0015187697224514|10.51|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 614.8342895507812 2 614.834257 1227.65396 0.45938 0.00028244 -0.23265 -0.00014304 0.22673 0.0001394 614.8340326454711 73.144 0.65605 76.371 76.077 76.734 3.2271 125 56 3 0 0 0 0.29515 1 18027 18027 22.736 0.078198 1 162660 + 22690 27020 14180 14189 26899 26899 0.04924042342713619 LIVLIVRQLC 10 Unmodified _LIVLIVRQLC_ 0 0 0 L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|4|1|sense L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|4|1|sense L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 585.7958374023438 2 585.375569 1168.73659 NaN NaN NaN NaN NaN NaN NaN 44.938 1 48.182 47.682 48.682 3.2441 0 0 0 0.53105 1 9472 9472 1.6526 1.0511 1 22691 13978 14181 14190 26900 26900 0.15896660869884727 LIVLKNLFKQ 10 Unmodified _LIVLKNLFKQ_ 0 0 0 REV__nc|ENSG00000168918|Q92835-3|INPP5D REV__nc|ENSG00000168918|Q92835-3|INPP5D MULTI-SECPEP UPN47_class_I_Rep_2 3 405.29974365234375 3 405.932303 1214.77508 -1.0016 -0.0004066 0.51781 0.0002102 -0.48383 -0.0001964 405.9324550258522 34.819 0.26495 38.244 38.04 38.305 3.4253 22 17 2 0 0 0 0.84575 1 6292 6292 0.13989 0.017027 1 47790 + 22692 20288 14182 14191 26901 26901 0.17628289776030215 LIVNPLIV 8 Unmodified _LIVNPLIV_ 0 0 0 REV__Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense REV__Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79925537109375 2 440.796946 879.57934 -0.16414 -7.2354E-05 2.4594 0.0010841 2.2952 0.0010117 440.7993320611319 47.921 0.47992 51.603 51.334 51.814 3.6819 48 28 2 0 0 0 0.82752 1 10279 10279 5.7604 0 1 130820 + 22693 17356 14183 14192 26902 26902 0.1347332432200119 LIVNPLIV 8 Unmodified _LIVNPLIV_ 0 0 0 REV__Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense REV__Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.098116 4.3249E-05 2.4836 0.0010948 2.5817 0.001138 440.79923989827785 51.836 0.13592 51.836 51.763 51.899 0 0.11643 1.4702E-05 NaN 5.7604 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 103510 + 22694 17356 14183 14192 0.1347332432200119 LIVRKKKLPF 10 Unmodified _LIVRKKKLPF_ 0 0 0 ENST00000394196.8_1_15:93570117-93570240:+|nuORF ENST00000394196.8_1_15:93570117-93570240:+|nuORF ENST00000394196.8_1_15:93570117-93570240:+|nuORF MSMS UPN46_class_I_Rep_3 1 621.4260864257812 2 621.426451 1240.83835 NaN NaN NaN NaN NaN NaN NaN 85.224 1 85.224 84.724 85.724 0 0 0 0 0.53105 1 20321 20321 0.40072 0 1 22695 6542 14184 14193 26903 26903 0.22756275283927607 LIVRSNGSVL 10 Unmodified _LIVRSNGSVL_ 0 0 0 ENSG00000117971|ENST00000261751|CHRNB4 ENSG00000117971|ENST00000261751|CHRNB4 ENSG00000117971|ENST00000261751|CHRNB4 MSMS UPN47_class_I_Rep_2 3 529.3208618164062 2 529.321848 1056.62914 NaN NaN NaN NaN NaN NaN NaN 64.832 1 68.088 67.588 68.588 3.2556 0 0 0 0.53105 1 15472 15472 10.074 0 1 22696 2237 14185 14194 26904 26904 0.10309407260001535 LIVSALITFFK 11 Unmodified _LIVSALITFFK_ 0 0 0 REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF MSMS UPN48_class_I_Rep_1 5 626.3885498046875 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.32 1 107.94 107.44 108.44 3.6247 0 0 0 0.38417 1 25133 25133 5.2969 0 1 + 22697 18722 14186 14195 26905 26905 0.14849467681892747 LIVSALITFFK 11 Unmodified _LIVSALITFFK_ 0 0 0 REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF MSMS UPN48_class_I_Rep_3 7 626.3861694335938 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.56 1 107.31 106.81 107.81 3.7434 0 0 0 0.35398 1 24460 24460 8.7454 0 1 + 22698 18722 14186 14195 26906 26906 0.14849467681892747 LIVSALITFFK 11 Unmodified _LIVSALITFFK_ 0 0 0 REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF MSMS UPN48_class_I_Rep_3 7 626.3887329101562 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.87 1 107.62 107.12 108.12 3.7434 0 0 0 0.38417 1 24530 24530 5.2969 0 1 + 22699 18722 14186 14195 26907 26907 0.14849467681892747 LIVVPDVS 8 Unmodified _LIVVPDVS_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MSMS UPN47_class_I_Rep_2 3 421.2541198730469 2 421.255111 840.49567 NaN NaN NaN NaN NaN NaN NaN 75.481 1 78.798 78.298 79.298 3.3168 0 0 0 0.40364 1 18640 18640 5.7604 0 1 22700 1152 14187 14196 26908 26908 0.06904168154289891 LIVVVVYWA 9 Unmodified _LIVVVVYWA_ 0 0 0 L1PB4_dup594|chr2:68795984-68798102:-|6.691091881734172|0.0991955374078877|6.08|151.0|86|2|anti-sense L1PB4_dup594|chr2:68795984-68798102:-|6.691091881734172|0.0991955374078877|6.08|151.0|86|2|anti-sense L1PB4_dup594|chr2:68795984-68798102:-|6.691091881734172|0.0991955374078877|6.08|151.0|86|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 530.8216552734375 2 531.323328 1060.6321 0.34483 0.00018322 -1.2907 -0.00068578 -0.94587 -0.00050256 531.3228849451515 73.44 0.13622 76.826 76.753 76.889 3.3861 15 11 2 0 0 0 0.12422 1 18021 18021 2.3027 0.24298 1 79149 22701 15337 14188 14197 26909 26909 0.10421282384800179 LIWCPSLFL 9 Unmodified _LIWCPSLFL_ 0 0 0 L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|132|2|anti-sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|132|2|anti-sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|132|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.3016967773438 2 546.301539 1090.58852 NaN NaN NaN NaN NaN NaN NaN 42.129 1 45.49 44.99 45.99 3.3611 0 0 0 0.381 1 8560 8560 5.2307 0 1 22702 9714 14189 14198 26910 26910 0.046853496159883434 LIWHGIICK 9 Unmodified _LIWHGIICK_ 0 0 0 REV__HERVFH19-int_dup32|chr8:657562-657945:-|1.9789878628896729|0.2299125011675463|3.11|151.0|22|3|anti-sense REV__HERVFH19-int_dup32|chr8:657562-657945:-|1.9789878628896729|0.2299125011675463|3.11|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_1 2 541.813232421875 2 541.812605 1081.61066 NaN NaN NaN NaN NaN NaN NaN 21.134 1 24.777 24.277 25.277 3.6436 0 0 0 0.39518 1 2244 2244 1.8442 1.0506 1 + 22703 23644 14190 14199 26911 26911 0.07311574084428685 LIWHPSLV 8 Unmodified _LIWHPSLV_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|46|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|46|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 482.795654296875 2 482.78437 963.554188 NaN NaN NaN NaN NaN NaN NaN 39.611 1 39.611 39.111 40.111 0 0 0 0 0.39408 1 7624 7624 10.183 3.8293 1 22704 15937 14191 14200 26912 26912 0.07095269519425074 LIWSLLFFAK 10 Unmodified _LIWSLLFFAK_ 0 0 0 REV__MSTB-int_dup844|chr19:14725367-14726954:-|1.1569426244022971|0.0501687960768968|4.53|151.0|81|3|anti-sense REV__MSTB-int_dup844|chr19:14725367-14726954:-|1.1569426244022971|0.0501687960768968|4.53|151.0|81|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 619.3712158203125 2 619.37081 1236.72707 0.53932 0.00033404 1.1213 0.00069447 1.6606 0.0010285 619.3713875526222 92.94 0.35566 96.661 96.519 96.875 3.7209 62 49 2 0 0 0 0.56486 1 23123 23123 0.40072 0.40072 1 84442 + 22705 31898 14192 14201 26913 26913 0.11817215855990071 LIWTAEWWV 9 Unmodified _LIWTAEWWV_ 0 0 0 REV__MSTA_dup18276|chr19:2277180-2277534:+|1.4308092726742696|0.033029164818198|5.44|151.0|1|1|sense REV__MSTA_dup18276|chr19:2277180-2277534:+|1.4308092726742696|0.033029164818198|5.44|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 401.8784484863281 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 18.493 1 18.493 17.993 18.993 0 0 0 0 0.4007 1 1624 1624 0.23584 0 1 + 22706 31844 14193 14202 26914 26914 0.019229063740112906 LIWTGKLI 8 Unmodified _LIWTGKLI_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|227|3|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|227|3|anti-sense MSMS UPN48_class_I_Rep_2 6 472.3023986816406 2 472.302396 942.590239 NaN NaN NaN NaN NaN NaN NaN 60.676 1 64.155 63.655 64.655 3.4785 0 0 0 0.40581 1 13419 13419 2.8892 0 1 + 22707 24876 14194 14203 26915 26915 0.11664726696278649 LIWVCHWGLP 10 Unmodified _LIWVCHWGLP_ 0 0 0 MER67A_dup449|chr22:19942683-19943183:-|2.265091392247258|0.2143361868661052|3.4|151.0|33|3|anti-sense MER67A_dup449|chr22:19942683-19943183:-|2.265091392247258|0.2143361868661052|3.4|151.0|33|3|anti-sense MER67A_dup449|chr22:19942683-19943183:-|2.265091392247258|0.2143361868661052|3.4|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 612.3226318359375 2 612.323337 1222.63212 NaN NaN NaN NaN NaN NaN NaN 62.845 1 62.845 62.345 63.345 0 0 0 0 0.53105 1 14077 14077 1.8442 0.19162 1 22708 16191 14195 14204 26916 26916 0.029709591131449997 LIWYCRRNR 9 Unmodified _LIWYCRRNR_ 0 0 0 REV__ENST00000367188.4_1_1:204375292-204375355:-|nuORF REV__ENST00000367188.4_1_1:204375292-204375355:-|nuORF MSMS UPN48_class_I_Rep_3 7 640.3451538085938 2 640.345666 1278.67678 NaN NaN NaN NaN NaN NaN NaN 101.79 1 105.6 105.1 106.1 3.8153 0 0 0 0.4007 1 24061 24061 0.52476 0 1 + 22709 21924 14196 14205 26917 26917 0.04858782979181342 LIYCKTATMY 10 Unmodified _LIYCKTATMY_ 0 0 0 REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|98|3|sense REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|98|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 603.7994995117188 2 603.798503 1205.58245 0.41584 0.00025108 0.48198 0.00029102 0.89781 0.0005421 603.7987436292843 43.12 0.88124 46.882 46.535 47.417 3.7617 94 69 2 0 0 0 0.56078 1 8130 8130 3.2813 0.97858 1 138300 + 22710 25279 14197 14206 26918 26918 -0.012115366778289172 LIYDGIHYD 9 Unmodified _LIYDGIHYD_ 0 0 0 nc|ENSG00000180667|Q5VVQ6-2|YOD1;ENSG00000180667|ENST00000315927|YOD1 nc|ENSG00000180667|Q5VVQ6-2|YOD1 nc|ENSG00000180667|Q5VVQ6-2|YOD1 MSMS UPN47_class_I_Rep_2 3 554.3441162109375 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 73.333 1 76.638 76.138 77.138 3.3048 0 0 0 0.34056 1 18026 18026 8.5933 2.2392 1 22711 4896 14198 14207 26919 26919 -0.025785536562807465 LIYDTYFQI 9 Unmodified _LIYDTYFQI_ 0 0 0 REV__HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|53|2|sense REV__HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|53|2|sense MSMS UPN48_class_I_Rep_1 5 588.3037719726562 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 44.699 1 48.212 47.712 48.712 3.5132 0 0 0 0.39518 1 8538 8538 1.8442 0.19162 1 + 22712 23983 14199 14208 26920 26920 0.010714765546708804 LIYFLINVI 9 Unmodified _LIYFLINVI_ 0 0 0 MER6A_dup569|chr9:238569-239160:-|2.289630294922699|0.0104648566497938|7.77|151.0|39|3|anti-sense MER6A_dup569|chr9:238569-239160:-|2.289630294922699|0.0104648566497938|7.77|151.0|39|3|anti-sense MER6A_dup569|chr9:238569-239160:-|2.289630294922699|0.0104648566497938|7.77|151.0|39|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3442993164062 2 554.344261 1106.67397 0.39804 0.00022065 -0.2465 -0.00013665 0.15153 8.4002E-05 554.3439622578519 72.864 0.468 76.244 76.082 76.55 3.3799 48 30 2 0 0 0 0.12799 1 17853 17853 28.487 3.813 1 121730 22713 16199 14200 14209 26921 26921 0.12489838073338433 LIYFPVVK 8 Unmodified _LIYFPVVK_ 0 0 0 REV__L1MB7_dup533|chr1:52547167-52548016:+|1.64929933640941|0.0084161995262337|7.61|151.0|47|1|anti-sense REV__L1MB7_dup533|chr1:52547167-52548016:+|1.64929933640941|0.0084161995262337|7.61|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_2 6 489.8061218261719 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 65.714 1 69.201 68.701 69.701 3.4866 0 0 0 0.40738 1 14957 14957 0.79363 0.10326 1 + 22714 26282 14201 14210 26922 26922 0.10529610839034831 LIYFPVVK 8 Unmodified _LIYFPVVK_ 0 0 0 REV__L1MB7_dup533|chr1:52547167-52548016:+|1.64929933640941|0.0084161995262337|7.61|151.0|47|1|anti-sense REV__L1MB7_dup533|chr1:52547167-52548016:+|1.64929933640941|0.0084161995262337|7.61|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_3 7 489.8059997558594 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 65.592 1 69.1 68.6 69.6 3.5077 0 0 0 0.40738 1 14835 14835 0.79363 0.19213 1 + 22715 26282 14201 14210 26923 26923 0.10529610839034831 LIYIIRGYP 9 Unmodified _LIYIIRGYP_ 0 0 0 REV__L1PA15_dup1514|chr3:125467713-125468404:+|1.3338306690981092|0.1172268794608493|3.51|151.0|47|3|anti-sense REV__L1PA15_dup1514|chr3:125467713-125468404:+|1.3338306690981092|0.1172268794608493|3.51|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.343994140625 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 72.746 1 75.973 75.473 76.473 3.2271 0 0 0 0.34056 1 17926 17926 8.5933 0 1 + 22716 29187 14202 14211 26924 26924 0.09975783270760985 LIYMIYQWQ 9 Unmodified _LIYMIYQWQ_ 0 0 0 REV__L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|6|1|sense REV__L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 629.3216552734375 2 629.32046 1256.62637 NaN NaN NaN NaN NaN NaN NaN 33.619 1 36.894 36.394 37.394 3.2748 0 0 0 0.40038 1 6014 6014 0.6015 0 1 + 22717 25882 14203 14212 26925 26925 0.008318158108068019 LIYPKRLK 8 Unmodified _LIYPKRLK_ 0 0 0 REV__L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|34|3|sense REV__L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 516.2996215820312 2 515.84222 1029.66989 NaN NaN NaN NaN NaN NaN NaN 69.002 1 72.511 72.011 73.011 3.5094 0 0 0 0.40625 1 15862 15862 2.3027 0 1 + 22718 26270 14204 14213 26926 26926 0.156237933702414 LIYYIKKF 8 Unmodified _LIYYIKKF_ 0 0 0 REV__L1M4b_dup1374|chr5:119510529-119512749:+|1.1169189202663568|0.3448342833416354|1.7|151.0|2|1|sense REV__L1M4b_dup1374|chr5:119510529-119512749:+|1.1169189202663568|0.3448342833416354|1.7|151.0|2|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 543.8320922851562 2 544.331153 1086.64775 0.42403 0.00023081 -2.5416 -0.0013835 -2.1175 -0.0011526 544.3298760332993 67.05 0.19462 70.241 70.126 70.32 3.1914 19 13 2 0 0 0 0.72333 1 16179 16179 2.5775 0.73324 1 75709 + 22719 24529 14205 14214 26927 26927 0.10789568901827806 LIYYWLFA 8 Unmodified _LIYYWLFA_ 0 0 0 REV__L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|148|3|anti-sense REV__L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|148|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.7882690429688 2 544.794404 1087.57425 NaN NaN NaN NaN NaN NaN NaN 116.35 1 119.98 119.48 120.48 3.6312 0 0 0 0.40581 1 27691 27691 2.8892 2.0956 1 + 22720 29250 14206 14215 26928 26928 0.03397020459374289 LKAETIKLI 9 Unmodified _LKAETIKLI_ 0 0 0 REV__nc|ENSG00000136811|Q5BJF6-7|ODF2 REV__nc|ENSG00000136811|Q5BJF6-7|ODF2 MULTI-MSMS UPN47_class_I_Rep_2 3 514.8391723632812 2 514.839342 1027.66413 -0.035452 -1.8252E-05 0.24322 0.00012522 0.20776 0.00010697 514.8393916925186 47.333 0.60964 50.683 50.343 50.952 3.3504 68 42 2 0 0 0 0.32682 1 10162 10162 12.241 1.4411 1 123850 + 22721 19201 14207 14216 26929 26929 0.15140650067951356 LKAEYIKP 8 Unmodified _LKAEYIKP_ 0 0 0 REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|44|2|sense REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|44|2|sense MSMS UPN47_class_I_Rep_3 4 481.2882995605469 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 15.679 1 19.045 18.545 19.545 3.3659 0 0 0 0.40659 1 850 850 1.8442 0 1 + 22722 24427 14208 14217 26930 26930 0.08255832453983203 LKAFLLKF 8 Unmodified _LKAFLLKF_ 0 0 0 ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2 ENSG00000047617|ENST00000682330|ANO2 ENSG00000047617|ENST00000682330|ANO2 MSMS UPN46_class_I_Rep_3 1 489.9586181640625 2 490.320589 978.626624 NaN NaN NaN NaN NaN NaN NaN 55.485 1 55.485 54.985 55.985 0 0 0 0 0.40738 1 12061 12061 0.79363 0 1 22723 888 14209 14218 26931 26931 0.13645603592999578 LKAFPLIT 8 Unmodified _LKAFPLIT_ 0 0 0 L1PB3_dup1609|chr8:47649786-47652125:+|3.4474612957699065|0.0356464510651034|6.6|150.0|2|1|sense L1PB3_dup1609|chr8:47649786-47652125:+|3.4474612957699065|0.0356464510651034|6.6|150.0|2|1|sense L1PB3_dup1609|chr8:47649786-47652125:+|3.4474612957699065|0.0356464510651034|6.6|150.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 451.73193359375 2 451.789121 901.56369 NaN NaN NaN NaN NaN NaN NaN 26.637 1 30.4 29.9 30.9 3.7624 0 0 0 0.40746 1 3839 3839 0.69038 0 1 22724 15255 14210 14219 26932 26932 0.10897037804954834 LKAIELPK 8 Unmodified _LKAIELPK_ 0 0 0 REV__ENSG00000198862|ENST00000361371|LTN1 REV__ENSG00000198862|ENST00000361371|LTN1 MSMS UPN48_class_I_Rep_2 6 456.3012390136719 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 44.756 1 48.518 48.018 49.018 3.7617 0 0 0 0.40643 1 8566 8566 2.0598 0 1 + 22725 21158 14211 14220 26933 26933 0.1262842283366581 LKAIELPK 8 Unmodified _LKAIELPK_ 0 0 0 REV__ENSG00000198862|ENST00000361371|LTN1 REV__ENSG00000198862|ENST00000361371|LTN1 MSMS UPN48_class_I_Rep_2 6 456.30126953125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.092 1 50.841 50.341 51.341 3.7494 0 0 0 0.40659 1 9274 9274 1.8442 0 1 + 22726 21158 14211 14220 26934 26934 0.1262842283366581 LKAIELPK 8 Unmodified _LKAIELPK_ 0 0 0 REV__ENSG00000198862|ENST00000361371|LTN1 REV__ENSG00000198862|ENST00000361371|LTN1 MSMS UPN48_class_I_Rep_3 7 456.3013610839844 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 44.849 1 48.486 47.986 48.986 3.6372 0 0 0 0.40643 1 8520 8520 2.0598 0 1 + 22727 21158 14211 14220 26935 26935 0.1262842283366581 LKAKKHVK 8 Unmodified _LKAKKHVK_ 0 0 0 nc|ENSG00000173093|Q8NA47-2|CCDC63;ENSG00000173093|ENST00000308208|CCDC63 nc|ENSG00000173093|Q8NA47-2|CCDC63 nc|ENSG00000173093|Q8NA47-2|CCDC63 MULTI-MSMS UPN47_class_I_Rep_2 3 476.3267822265625 2 476.326737 950.63892 0.32269 0.00015371 -0.13498 -6.4295E-05 0.18771 8.941E-05 476.32657850827337 108.31 1.0247 111.84 111.63 112.65 3.5333 174 111 2 0 0 0 0.82752 1 26394 26394 0.69038 0 1 26077000 22728 4610 14212 14221 26936 26936 0.161626400560408 LKAKKRAK 8 Unmodified _LKAKKRAK_ 0 0 0 REV__ENSG00000065183|ENST00000349139|WDR3 REV__ENSG00000065183|ENST00000349139|WDR3 MULTI-SECPEP UPN47_class_I_Rep_3 4 471.7955017089844 2 471.832186 941.649819 0.042925 2.0253E-05 4.0276 0.0019003 4.0705 0.0019206 471.8324685736627 89.075 0.054428 92.468 92.437 92.492 3.3931 8 5 2 0 0 0 0.72333 1 22332 22332 0.69038 0 1 40620 + 22729 17752 14213 14222 26937 26937 0.17666042430312245 LKAKRRKS 8 Unmodified _LKAKRRKS_ 0 0 0 L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|55|3|sense L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|55|3|sense L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|55|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 493.3534851074219 2 493.832717 985.650882 0.4642 0.00022924 3.081 0.0015215 3.5452 0.0017507 493.83488222840094 108.23 0.27751 111.77 111.61 111.89 3.5333 33 26 2 0 0 0 0.72333 1 26229 26229 2.3027 0 1 1115300 22730 11825 14214 14223 26938 26938 0.1574825679922469 LKAKRRKS 8 Unmodified _LKAKRRKS_ 0 0 0 L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|55|3|sense L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|55|3|sense L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|55|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 493.832717 985.650882 0.27271 0.00013467 3.7778 0.0018656 4.0505 0.0020003 493.834916267418 108.17 0.020134 111.84 111.83 111.85 3.6746 0.039224 0.00049503 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 971130 22731 11825 14214 14223 0.1574825679922469 LKALPKDIKVK 11 Unmodified _LKALPKDIKVK_ 0 0 0 REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|75|2|sense REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|75|2|sense MSMS UPN46_class_I_Rep_3 1 626.9215087890625 2 626.921198 1251.82784 NaN NaN NaN NaN NaN NaN NaN 32.328 1 32.328 31.828 32.828 0 0 0 0 0.38417 1 5516 5516 0.30703 0 1 + 22732 24798 14215 14224 26939 26939 0.21200247838805808 LKALRGLV 8 Unmodified _LKALRGLV_ 0 0 0 ENST00000487998.5_1_10:92631743-92654759:+|nuORF;ENSG00000148688|ENST00000371703|RPP30;nc|ENSG00000148688|P78346-2|RPP30 ENST00000487998.5_1_10:92631743-92654759:+|nuORF ENST00000487998.5_1_10:92631743-92654759:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.3002624511719 2 435.300188 868.585822 0.013166 5.7311E-06 0.38414 0.00016722 0.39731 0.00017295 435.3003143495035 64.25 0.10609 67.606 67.559 67.665 3.3557 17 11 2 0 0 0 0.82752 1 15259 15259 2.3027 0 1 298210 22733 3519 14216 14225 26940 26940 0.14627262273370434 LKALRGLV 8 Unmodified _LKALRGLV_ 0 0 0 ENST00000487998.5_1_10:92631743-92654759:+|nuORF;ENSG00000148688|ENST00000371703|RPP30;nc|ENSG00000148688|P78346-2|RPP30 ENST00000487998.5_1_10:92631743-92654759:+|nuORF ENST00000487998.5_1_10:92631743-92654759:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.15944 6.9406E-05 0.10371 4.5146E-05 0.26316 0.00011455 435.30022660956513 63.754 0.092072 67.264 67.233 67.325 3.5091 -0.17129 -0.00019529 NaN 2.3027 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 106750 22734 3519 14216 14225 0.14627262273370434 LKAMKTWI 8 Unmodified _LKAMKTWI_ 0 0 0 REV__MSTA-int_dup341|chr2:168604911-168606680:+|1.0932564544982564|0.0237657303953014|5.52|151.0|22|2|sense REV__MSTA-int_dup341|chr2:168604911-168606680:+|1.0932564544982564|0.0237657303953014|5.52|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 495.79595947265625 2 495.793881 989.573209 0.17411 8.6325E-05 1.8813 0.00093276 2.0555 0.0010191 495.79611305690037 110.71 0.37561 114.35 114.14 114.51 3.6326 97 44 3 0 0 0 0.82752 1 26861 26861 2.0598 0 1 104030 + 22735 31876 14217 14226 26941 26941 0.07800482818834098 LKAPQSIQP 9 Unmodified _LKAPQSIQP_ 0 0 0 REV__nc|ENSG00000104419|Q92597-2|NDRG1 REV__nc|ENSG00000104419|Q92597-2|NDRG1 MULTI-MSMS UPN47_class_I_Rep_1 2 491.2895202636719 2 491.290017 980.565481 -0.26414 -0.00012977 -0.12933 -6.3536E-05 -0.39346 -0.0001933 491.28984438532814 38.819 0.4401 42.485 42.32 42.76 3.6652 30 26 2 0 0 0 0.43982 2 7508 7508;7560 5.7319 0 1 56569 + 22736 18257 14218 14227 26942;26943 26942 0.07442046822893644 LKAPQSIQP 9 Unmodified _LKAPQSIQP_ 0 0 0 REV__nc|ENSG00000104419|Q92597-2|NDRG1 REV__nc|ENSG00000104419|Q92597-2|NDRG1 MSMS UPN47_class_I_Rep_2 3 491.28948974609375 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 39.095 1 42.473 41.973 42.973 3.3785 0 0 0 0.37891 1 7641 7641 5.7319 0 1 + 22737 18257 14218 14227 26944 26944 0.07442046822893644 LKAPQSIQP 9 Unmodified _LKAPQSIQP_ 0 0 0 REV__nc|ENSG00000104419|Q92597-2|NDRG1 REV__nc|ENSG00000104419|Q92597-2|NDRG1 MSMS UPN47_class_I_Rep_3 4 491.28924560546875 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 39.199 1 42.437 41.937 42.937 3.238 0 0 0 0.34878 1 7717 7717 8.1555 0 1 + 22738 18257 14218 14227 26945 26945 0.07442046822893644 LKARRDNW 8 Unmodified _LKARRDNW_ 0 0 0 MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|84|3|anti-sense MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|84|3|anti-sense MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|84|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7971801757812 2 529.796332 1057.57811 NaN NaN NaN NaN NaN NaN NaN 48.044 1 51.726 51.226 52.226 3.6819 0 0 0 0.40604 1 10329 10329 2.5775 0 1 22739 16164 14219 14228 26946 26946 0.05162503005794861 LKAVGKKFMH 10 Unmodified _LKAVGKKFMH_ 0 0 0 ENST00000470730.5_1_X:67718978-67733354:+|nuORF;ENSG00000181704.12,YIPF6,chrX,+,I7.1,68522918,68531880|77|5.92|2|intron;ENSG00000181704.12,YIPF6,chrX,+,I7.1,68522918,68531880|77|5.92|1|intron;nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704.12,YIPF6,chrX,+,I7.1,68522918,68531880|77|5.92|3|intron;ENSG00000181704|ENST00000462683|YIPF6 ENST00000470730.5_1_X:67718978-67733354:+|nuORF ENST00000470730.5_1_X:67718978-67733354:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 579.8448486328125 2 579.844436 1157.67432 0.40419 0.00023437 -0.10507 -6.0922E-05 0.29912 0.00017344 579.8443450903954 93.578 0.45816 97.198 96.991 97.449 3.6208 68 53 2 0 0 0 0.56333 1 22521 22521 1.4819 0 1 135220 22740 4924 14220 14229 26947 26947 0.10178934521536576 LKAWAEYDY 9 Unmodified _LKAWAEYDY_ 0 0 0 REV__ENST00000551293.1_1_12:48095240-48099773:-|nuORF REV__ENST00000551293.1_1_12:48095240-48099773:-|nuORF MSMS UPN47_class_I_Rep_1 2 579.7772216796875 2 579.776939 1157.53933 NaN NaN NaN NaN NaN NaN NaN 30.209 1 33.954 33.454 34.454 3.7449 0 0 0 0.39428 1 4908 4908 2.0598 0 1 + 22741 17526 14221 14230 26948 26948 -0.03314267139239746 LKAYVPNSYN 10 Unmodified _LKAYVPNSYN_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MSMS UPN47_class_I_Rep_1 2 584.8046264648438 2 584.803488 1167.59242 NaN NaN NaN NaN NaN NaN NaN 59.546 1 62.944 62.444 63.444 3.3982 0 0 0 0.53105 1 13835 13835 2.7352 0 1 + 22742 20277 14222 14231 26949 26949 0.015331106434359754 LKCIHIHLV 9 Unmodified _LKCIHIHLV_ 0 0 0 L1MC5_dup14983|chr21:44024425-44025238:-|1.2703683718927186|0.0076479109695551|7.38|151.0|24|3|sense L1MC5_dup14983|chr21:44024425-44025238:-|1.2703683718927186|0.0076479109695551|7.38|151.0|24|3|sense L1MC5_dup14983|chr21:44024425-44025238:-|1.2703683718927186|0.0076479109695551|7.38|151.0|24|3|sense MSMS UPN47_class_I_Rep_3 4 538.327880859375 2 538.325879 1074.63721 NaN NaN NaN NaN NaN NaN NaN 94.06 1 97.467 96.967 97.967 3.4068 0 0 0 0.40038 1 23423 23423 0.6015 0 1 22743 11671 14223 14232 26950 26950 0.10287262975771228 LKCKLSCCS 9 Unmodified _LKCKLSCCS_ 0 0 0 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 MSMS UPN46_class_I_Rep_3 1 492.73779296875 2 492.737391 983.460229 NaN NaN NaN NaN NaN NaN NaN 26.476 1 26.476 25.976 26.976 0 0 0 0 0.39428 1 3791 3791 2.0598 1.2661 1 + 22744 19815 14224 14233 26951 26951 -0.032162769610522446 LKDEFPYWV 9 Unmodified _LKDEFPYWV_ 0 0 0 REV__L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|81|2|anti-sense REV__L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|81|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.302734375 2 598.802957 1195.59136 0.40173 0.00024056 -3.2076 -0.0019207 -2.8059 -0.0016802 598.8008882730227 62.714 0.10445 66.074 66.016 66.121 3.3595 9 6 2 0 0 0 0.47197 1 14786 14786 3.5965 0.60125 1 56930 + 22745 25608 14225 14234 26952 26952 0.0013889627450680564 LKDEFPYWV 9 Unmodified _LKDEFPYWV_ 0 0 0 REV__L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|81|2|anti-sense REV__L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|81|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.8008422851562 2 598.802957 1195.59136 NaN NaN NaN NaN NaN NaN NaN 62.584 1 65.943 65.443 66.443 3.3595 0 0 0 0.37476 1 14754 14754 6.7232 0.93973 1 + 22746 25608 14225 14234 26953 26953 0.0013889627450680564 LKDEPSLTL 9 Unmodified _LKDEPSLTL_ 0 0 0 REV__ENST00000502875.1_1_4:141563950-141565549:-|nuORF REV__ENST00000502875.1_1_4:141563950-141565549:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 508.8028564453125 2 508.28714 1014.55973 -0.24741 -0.00012576 -1.0916 -0.00055486 -1.339 -0.00068062 508.78695858093573 30.611 0.31764 34.093 33.862 34.18 3.4821 25 23 2 0 0 0 0.26948 1 5084 5084 15.847 0 1 87799 + 22747 22693 14226 14235 26954 26954 0.05302903520566815 LKDKHATSIIK 11 Unmodified _LKDKHATSIIK_ 0 0 0 REV__L1MA3_dup1152|chr2:195760053-195766167:+|1.2558330830388231|0.2030092022331152|2.63|151.0|230|1|anti-sense REV__L1MA3_dup1152|chr2:195760053-195766167:+|1.2558330830388231|0.2030092022331152|2.63|151.0|230|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 626.8894653320312 2 627.382437 1252.75032 0.51251 0.00032154 1.3415 0.00084164 1.854 0.0011632 627.3832037385695 105.94 0.20908 109.47 109.41 109.62 3.5367 49 31 2 0 0 0 22.551 1 25923 25923 2.4985 0 1 253890 + 22748 24958 14227 14236 26955 26955 0.1340560990265658 LKDKHATSIIK 11 Unmodified _LKDKHATSIIK_ 0 0 0 REV__L1MA3_dup1152|chr2:195760053-195766167:+|1.2558330830388231|0.2030092022331152|2.63|151.0|230|1|anti-sense REV__L1MA3_dup1152|chr2:195760053-195766167:+|1.2558330830388231|0.2030092022331152|2.63|151.0|230|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 626.89013671875 2 627.382437 1252.75032 0.4951 0.00031062 1.1758 0.00073767 1.6709 0.0010483 627.8852688558788 105.66 0.063751 109.35 109.31 109.37 3.6901 12 8 2 0 0 0 22.551 1 24991 24991 2.4985 0 1 104530 + 22749 24958 14227 14236 26956 26956 0.1340560990265658 LKDKQKLH 8 Unmodified _LKDKQKLH_ 0 0 0 REV__ENSG00000133812.16,SBF2,chr11,-,I30.1,9828633,9829355|48|6.49|3|intron REV__ENSG00000133812.16,SBF2,chr11,-,I30.1,9828633,9829355|48|6.49|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 505.3112487792969 2 505.311284 1008.60801 -0.080995 -4.0928E-05 0.071168 3.5962E-05 -0.0098272 -4.9658E-06 505.3113378179972 44.84 1.2249 48.54 48.102 49.327 3.6999 144 78 3 0 0 0 0.82752 1 9260 9260 7.9102 0 1 237280 + 22750 19069 14228 14237 26957 26957 0.10405441951138528 LKDPHQLLL 9 Unmodified _LKDPHQLLL_ 0 0 0 REV__AluJb_dup97010|chr15:58660180-58660358:-|1.1132494135118527|0.0125891330650851|6.47|151.0|13|2|anti-sense REV__AluJb_dup97010|chr15:58660180-58660358:-|1.1132494135118527|0.0125891330650851|6.47|151.0|13|2|anti-sense MSMS UPN48_class_I_Rep_1 5 538.8284912109375 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 93.302 1 96.926 96.426 97.426 3.624 0 0 0 0.37476 1 22421 22421 6.7232 0 1 + 22751 16976 14229 14238 26958 26958 0.10418595265377917 LKDRGEVIR 9 Unmodified _LKDRGEVIR_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN48_class_I_Rep_1 5 543.324951171875 2 543.324922 1084.63529 0.45568 0.00024758 -0.29686 -0.00016129 0.15882 8.629E-05 543.3245706166699 35.219 0.82294 38.733 38.45 39.273 3.5144 166 81 3 0 0 0 0.43982 1 5835 5835 5.7319 0 1 291530 22752 3707 14230 14239 26959 26959 0.09635925491511443 LKDRGEVIR 9 Unmodified _LKDRGEVIR_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN48_class_I_Rep_2 6 543.3248291015625 2 543.324922 1084.63529 0.46344 0.0002518 -0.44541 -0.000242 0.018035 9.799E-06 543.3245092680344 35.068 0.87145 38.742 38.421 39.292 3.6735 165 84 3 0 0 0 0.43982 1 5654 5654 5.7319 0 1 336680 22753 3707 14230 14239 26960 26960 0.09635925491511443 LKDRGKLFF 9 Unmodified _LKDRGKLFF_ 0 0 0 REV__ENSG00000138031|ENST00000679454|ADCY3 REV__ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS UPN46_class_I_Rep_3 1 562.3346557617188 2 562.334759 1122.65496 0.14404 8.0997E-05 0.044212 2.4862E-05 0.18825 0.00010586 562.3346794822943 28.206 0.13876 28.206 28.111 28.249 0 23 10 3 0 0 0 0.49026 1 4283 4283 1.6526 0.85899 1 384050 + 22754 19259 14231 14240 26961 26961 0.09854301502286944 LKDRRSSKC 9 Unmodified _LKDRRSSKC_ 0 0 0 HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|113|1|anti-sense HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|113|1|anti-sense HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|113|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 547.3316040039062 2 546.800757 1091.58696 0.40025 0.00021886 -0.75354 -0.00041203 -0.35328 -0.00019318 546.8002904770232 71.911 0.59253 75.201 74.953 75.545 3.2899 78 51 2 0 0 0 0.11705 1 17686 17686 10.824 1.4765 1 105510 22755 8343 14232 14241 26962 26962 0.04483108579961481 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.8125610351562 2 537.813325 1073.6121 0.35479 0.00019081 -0.7456 -0.000401 -0.39081 -0.00021018 537.812745529624 108.93 0.58083 108.93 108.82 109.4 0 73 38 3 0 0 0 0.42249 1 26766 26766 6.7232 0 1 4648100 + 22756 29817 14233 14242 26963 26963 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MSMS UPN46_class_I_Rep_3 1 537.81298828125 2 537.813325 1073.6121 NaN NaN NaN NaN NaN NaN NaN 109.71 1 109.71 109.21 110.21 0 0 0 0 0.37476 1 26973 26973 6.7232 0 1 + 22757 29817 14233 14242 26964 26964 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 537.3794555664062 2 537.813325 1073.6121 0.35479 0.00019081 -0.7456 -0.000401 -0.39081 -0.00021018 537.812745529624 108.93 0.58083 108.93 108.82 109.4 0 73 38 3 0 0 0 0.12099 1 26732 26732 6.7232 0 1 4648100 + 22758 29817 14233 14242 26965 26965 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 537.8820190429688 2 537.813325 1073.6121 0.57923 0.00031152 -0.55168 -0.0002967 0.027553 1.4818E-05 537.8128658368768 108.81 0.50334 112.34 112.16 112.66 3.5333 107 56 2 0 0 0 0.42249 4 26367 26367;26377;26486;26541 6.7232 0 1 9088800 + 22759 29817 14233 14242 26966;26967;26968;26969 26966 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 537.813232421875 2 537.813325 1073.6121 0.48279 0.00025965 -0.57731 -0.00031048 -0.094517 -5.0833E-05 537.8128433013948 108.78 0.34663 112.32 112.18 112.52 3.5382 87 37 3 0 0 0 0.42249 2 26665 26665;26718 6.7232 0 1 7895400 + 22760 29817 14233 14242 26970;26971 26970 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.8134765625 2 537.813325 1073.6121 0.46087 0.00024786 -0.54893 -0.00029522 -0.088055 -4.7357E-05 537.8129368153208 108.78 0.4818 112.46 112.29 112.77 3.6746 77 51 2 0 0 0 0.42249 3 25800 25800;25851;25902 6.7232 0 1 7061000 + 22761 29817 14233 14242 26972;26973;26974 26972 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.81396484375 2 537.813325 1073.6121 0.57446 0.00030895 -0.28834 -0.00015507 0.28612 0.00015388 537.8130582053984 108.73 0.23579 112.41 112.31 112.54 3.6751 43 25 2 0 0 0 0.42249 2 25734 25734;25787 6.7232 0 1 6049100 + 22762 29817 14233 14242 26975;26976 26975 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.8128662109375 2 537.813325 1073.6121 0.57448 0.00030896 -0.83358 -0.00044831 -0.2591 -0.00013935 538.3144511756976 108.97 0.22421 112.65 112.54 112.77 3.6751 34 24 2 0 0 0 0.42249 1 25878 25878 6.7232 0 1 6604700 + 22763 29817 14233 14242 26977 26977 0.07823486654183398 LKEAIPEFK 9 Unmodified _LKEAIPEFK_ 0 0 0 REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense REV__L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|86|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 537.813325 1073.6121 0.35335 0.00019004 -0.97152 -0.0005225 -0.61816 -0.00033246 537.8128963415968 109.28 0.14249 112.91 112.88 113.02 3.6321 0.13774 -9.8385E-05 NaN 6.7232 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 815030 + 22764 29817 14233 14242 0.07823486654183398 LKEAPNLKF 9 Unmodified _LKEAPNLKF_ 0 0 0 L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|20|2|sense L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|20|2|sense L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 530.3128051757812 2 530.313492 1058.61243 NaN NaN NaN NaN NaN NaN NaN 29.681 1 33.313 32.813 33.813 3.6316 0 0 0 0.39518 1 4248 4248 1.8442 0 1 22765 15385 14234 14243 26978 26978 0.08546906374044738 LKEASLRSSV 10 Unmodified _LKEASLRSSV_ 0 0 0 HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|48|1|anti-sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|48|1|anti-sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|48|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 545.3168334960938 2 545.316763 1088.61897 0.48765 0.00026593 0.0049452 2.6967E-06 0.4926 0.00026862 545.316591400619 81.667 1.5836 85.051 84.262 85.845 3.384 431 189 3 0 0 0 0.56189 3 20283 20283;20316;20417 2.4985 2.4985 1 715200 22766 8158 14235 14244 26979;26980;26981 26979 0.07820799534783873 LKEASLRSSV 10 Unmodified _LKEASLRSSV_ 0 0 0 HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|48|1|anti-sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|48|1|anti-sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|48|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 545.31640625 2 545.316763 1088.61897 0.51228 0.00027935 0.13255 7.228E-05 0.64482 0.00035163 545.3165804532301 81.208 2.1792 84.893 84.297 86.476 3.685 459 276 3 0 0 0 0.56189 1 19444 19444 2.4985 2.4985 1 576570 22767 8158 14235 14244 26982 26982 0.07820799534783873 LKEDFENVL 9 Unmodified _LKEDFENVL_ 0 0 0 REV__nc|ENSG00000149557|Q99689-2|FEZ1 REV__nc|ENSG00000149557|Q99689-2|FEZ1 MULTI-MSMS UPN47_class_I_Rep_1 2 553.7898559570312 2 553.790047 1105.56554 0.39247 0.00021734 0.038817 2.1496E-05 0.43128 0.00023884 553.7899273897068 64.437 0.90509 67.793 67.421 68.326 3.3557 165 85 2 0 0 0 0.23293 1 15364 15364 18.146 4.2403 1 404980 + 22768 19619 14236 14245 26983 26983 0.01698002032230761 LKEEKKRD 8 Unmodified _LKEEKKRD_ 0 0 0 ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D;ENST00000562938.5_1_15:78207528-78213944:-|nuORF ENSG00000215186|ENST00000421285|GOLGA6B ENSG00000215186|ENST00000421285|GOLGA6B MULTI-MSMS UPN46_class_I_Rep_3 1 523.303955078125 2 523.303655 1044.59276 0.32765 0.00017146 0.27388 0.00014332 0.60153 0.00031478 523.3036780504181 84.951 0.15823 84.951 84.868 85.026 0 21 13 2 0 0 0 0.82752 1 20249 20249 0.6015 0 1 622630 22769 3178 14237 14246 26984 26984 0.07224530363305348 LKEEKKRD 8 Unmodified _LKEEKKRD_ 0 0 0 ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D;ENST00000562938.5_1_15:78207528-78213944:-|nuORF ENSG00000215186|ENST00000421285|GOLGA6B ENSG00000215186|ENST00000421285|GOLGA6B MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.303655 1044.59276 0.10375 5.4294E-05 -1.1095 -0.00058059 -1.0057 -0.0005263 523.3031794138532 81.686 0.092537 85.07 85.025 85.118 3.3839 0.044976 -0.00038549 NaN 0.6015 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 219930 22770 3178 14237 14246 0.07224530363305348 LKEEKKRD 8 Unmodified _LKEEKKRD_ 0 0 0 ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D;ENST00000562938.5_1_15:78207528-78213944:-|nuORF ENSG00000215186|ENST00000421285|GOLGA6B ENSG00000215186|ENST00000421285|GOLGA6B MULTI-MATCH UPN47_class_I_Rep_3 4 2 523.303655 1044.59276 0.36471 0.00019085 -1.8578 -0.0009722 -1.4931 -0.00078134 523.302825371779 81.659 0.095871 84.982 84.905 85.001 3.3231 -0.043035 -0.0011687 NaN 0.6015 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 44324 22771 3178 14237 14246 0.07224530363305348 LKEEKKRD 8 Unmodified _LKEEKKRD_ 0 0 0 ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D;ENST00000562938.5_1_15:78207528-78213944:-|nuORF ENSG00000215186|ENST00000421285|GOLGA6B ENSG00000215186|ENST00000421285|GOLGA6B MULTI-MATCH UPN48_class_I_Rep_3 7 2 523.303655 1044.59276 0.45331 0.00023722 0.8232 0.00043079 1.2765 0.000668 523.3028091298492 81.412 0.043259 85.097 85.067 85.111 3.685 0.072307 0.0016373 NaN 0.6015 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 28164 22772 3178 14237 14246 0.07224530363305348 LKEELKRF 8 Unmodified _LKEELKRF_ 0 0 0 L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|46|2|sense L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|46|2|sense L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 531.8173217773438 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 84.139 1 84.139 83.639 84.639 0 0 0 0 0.40643 1 20005 20005 2.0598 0 1 22773 11975 14238 14247 26985 26985 0.09498308748334239 LKEELLLL 8 Unmodified _LKEELLLL_ 0 0 0 ENSG00000147183|ENST00000276127|CPXCR1 ENSG00000147183|ENST00000276127|CPXCR1 ENSG00000147183|ENST00000276127|CPXCR1 MULTI-MSMS UPN47_class_I_Rep_3 4 485.8121337890625 2 485.812793 969.611034 0.13433 6.5257E-05 0.54362 0.0002641 0.67795 0.00032936 485.8117207131178 64.339 0.59026 67.513 67.227 67.817 3.1741 72 41 2 0 0 0 0.82752 1 15308 15308 0.79363 0 1 423860 22774 3466 14239 14248 26986 26986 0.1250127228530573 LKEFEEPY 8 Unmodified _LKEFEEPY_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS UPN47_class_I_Rep_1 2 527.7577514648438 2 527.758215 1053.50188 NaN NaN NaN NaN NaN NaN NaN 114.22 1 117.8 117.3 118.3 3.5809 0 0 0 0.40604 1 28215 28215 2.5775 0 1 + 22775 20254 14240 14249 26987 26987 -0.022733584048637567 LKEFGADFA 9 Unmodified _LKEFGADFA_ 0 0 0 REV__nc|ENSG00000137501|Q9HCH5-12|SYTL2 REV__nc|ENSG00000137501|Q9HCH5-12|SYTL2 MSMS UPN48_class_I_Rep_1 5 498.78118896484375 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 87.733 1 91.352 90.852 91.852 3.6187 0 0 0 0.39598 1 21029 21029 1.6526 0.85899 1 + 22776 19235 14241 14250 26988 26988 -0.006739213394325816 LKEFKTGL 8 Unmodified _LKEFKTGL_ 0 0 0 L1PA15_dup8188|chr22:20826371-20827792:-|1.087886404468202|0.0232867468818111|5.55|151.0|13|1|sense L1PA15_dup8188|chr22:20826371-20827792:-|1.087886404468202|0.0232867468818111|5.55|151.0|13|1|sense L1PA15_dup8188|chr22:20826371-20827792:-|1.087886404468202|0.0232867468818111|5.55|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 468.2811584472656 2 468.28166 934.548768 -0.31361 -0.00014686 -0.11131 -5.2126E-05 -0.42492 -0.00019898 468.281494283906 38.84 0.94501 42.505 42.132 43.077 3.6652 136 61 3 0 0 0 0.82752 1 7440 7440 3.5965 0 1 439950 22777 13992 14242 14251 26989 26989 0.07887545936932838 LKEFLRIELWI 11 Unmodified _LKEFLRIELWI_ 0 0 0 L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 486.78466796875 3 487.2939 1458.85987 0.26103 0.0001272 -0.30821 -0.00015019 -0.047177 -2.2989E-05 487.6277979262681 94.571 0.037056 98.322 98.294 98.331 3.7508 6 4 2 0 0 0 22.551 1 23488 23488 0.40827 0.31342 1 33693 22778 13407 14243 14252 26990 26990 0.1487961552197703 LKEFLRIELWI 11 Unmodified _LKEFLRIELWI_ 0 0 0 L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 486.7842712402344 3 487.2939 1458.85987 0.44458 0.00021664 0.075288 3.6687E-05 0.51987 0.00025333 487.2932292173143 94.9 0.027618 98.372 98.359 98.386 3.472 5 3 2 0 0 0 22.551 1 23376 23376 1.2148 0.70888 1 47607 22779 13407 14243 14252 26991 26991 0.1487961552197703 LKEFLRIELWI 11 Unmodified _LKEFLRIELWI_ 0 0 0 L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|126|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 487.2939 1458.85987 0.22261 0.00010847 -0.42423 -0.00020673 -0.20163 -9.8251E-05 487.2936586064162 94.597 0.034882 98.004 97.979 98.014 3.4068 -0.22897 -0.00010249 NaN 0.40827 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 51640 22780 13407 14243 14252 0.1487961552197703 LKEFVSRKG 9 Unmodified _LKEFVSRKG_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|162|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|162|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|162|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 532.3177490234375 2 532.316566 1062.61858 0.4762 0.00025349 0.1339 7.1277E-05 0.6101 0.00032477 532.316545126733 107.85 0.21193 111.52 111.45 111.66 3.6724 25 12 3 0 0 0 0.32682 1 26436 26436 12.241 2.8575 1 31195000 22781 8290 14244 14253 26992 26992 0.0897742460556401 LKEFVSRKG 9 Unmodified _LKEFVSRKG_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|162|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|162|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|162|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 532.316566 1062.61858 0.43158 0.00022974 -0.57063 -0.00030375 -0.13905 -7.4016E-05 532.3163680996377 107.91 0.021439 111.58 111.57 111.59 3.6746 0.10441 -0.00081044 NaN 12.241 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1077700 22782 8290 14244 14253 0.0897742460556401 LKEGRRFI 8 Unmodified _LKEGRRFI_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MSMS UPN47_class_I_Rep_2 3 509.80328369140625 2 509.811451 1017.60835 NaN NaN NaN NaN NaN NaN NaN 89.942 1 93.399 92.899 93.899 3.4571 0 0 0 0.39996 1 22333 22333 7.9102 0 1 + 22783 19779 14245 14254 26993 26993 0.10024861670990504 LKEIIRKLA 9 Unmodified _LKEIIRKLA_ 0 0 0 REV__nc|ENSG00000272987|P0C617|OR5AL1 REV__nc|ENSG00000272987|P0C617|OR5AL1 MSMS UPN48_class_I_Rep_1 5 542.3662109375 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 108.43 1 112.06 111.56 112.56 3.6313 0 0 0 0.39518 1 26236 26236 1.8442 0 1 + 22784 32120 14246 14255 26994 26994 0.17951447570476375 LKEKAKKRK 9 Unmodified _LKEKAKKRK_ 0 0 0 nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A MSMS UPN47_class_I_Rep_2 3 564.8814697265625 2 564.882407 1127.75026 NaN NaN NaN NaN NaN NaN NaN 107.73 1 111.27 110.77 111.77 3.5345 0 0 0 0.39518 1 26073 26073 1.8442 0 1 22785 5796 14247 14256 26995 26995 0.19149654693319462 LKEKAKKRK 9 Unmodified _LKEKAKKRK_ 0 0 0 nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A MSMS UPN48_class_I_Rep_1 5 564.8812255859375 2 564.882407 1127.75026 NaN NaN NaN NaN NaN NaN NaN 109.5 1 113.13 112.63 113.63 3.6321 0 0 0 0.39518 1 26593 26593 1.8442 0 1 22786 5796 14247 14256 26996 26996 0.19149654693319462 LKEKAKKRK 9 Unmodified _LKEKAKKRK_ 0 0 0 nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A MSMS UPN48_class_I_Rep_3 7 564.8816528320312 2 564.882407 1127.75026 NaN NaN NaN NaN NaN NaN NaN 109.52 1 113.19 112.69 113.69 3.67 0 0 0 0.39518 1 26013 26013 1.8442 0 1 22787 5796 14247 14256 26997 26997 0.19149654693319462 LKEKKANSK 9 Unmodified _LKEKKANSK_ 0 0 0 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 MSMS UPN47_class_I_Rep_1 2 523.3037109375 2 523.321848 1044.62914 NaN NaN NaN NaN NaN NaN NaN 79.118 1 82.564 82.064 83.064 3.4456 0 0 0 0.39036 1 19699 19699 2.9952 0 1 22788 16715 14248 14257 26998 26998 0.10861407259972111 LKEKKANSK 9 Unmodified _LKEKKANSK_ 0 0 0 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 MSMS UPN47_class_I_Rep_1 2 523.3033447265625 2 523.321848 1044.62914 NaN NaN NaN NaN NaN NaN NaN 80.643 1 84.13 83.63 84.63 3.4874 0 0 0 0.39036 1 20095 20095 2.9952 0 1 22789 16715 14248 14257 26999 26999 0.10861407259972111 LKEKKANSK 9 Unmodified _LKEKKANSK_ 0 0 0 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 MSMS UPN48_class_I_Rep_2 6 523.3035888671875 2 523.321848 1044.62914 NaN NaN NaN NaN NaN NaN NaN 79.377 1 83.01 82.51 83.51 3.6331 0 0 0 0.39036 1 18855 18855 2.9952 0 1 22790 16715 14248 14257 27000 27000 0.10861407259972111 LKEKKANSK 9 Unmodified _LKEKKANSK_ 0 0 0 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 nc|ENSG00000154240|Q8N8E3-2|CEP112 MULTI-MSMS UPN48_class_I_Rep_3 7 523.3033447265625 2 523.321848 1044.62914 0.45801 0.00023969 -0.98394 -0.00051492 -0.52593 -0.00027523 523.32100458492 79.53 0.59174 83.172 82.804 83.395 3.6423 98 73 2 0 0 0 0.47763 1 18857 18857 2.9952 0 1 122460 22791 16715 14248 14257 27001 27001 0.10861407259972111 LKEKKETR 8 Unmodified _LKEKKETR_ 0 0 0 LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|17|1|anti-sense LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|17|1|anti-sense LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|17|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.3131713867188 2 516.314023 1030.61349 0.34642 0.00017886 -0.5413 -0.00027948 -0.19488 -0.00010062 516.3133795313872 95.103 0.26013 98.883 98.756 99.016 3.7804 51 36 2 0 0 0 0.82752 1 22618 22618 2.3027 0 1 80089 22792 15671 14249 14258 27002 27002 0.09941120742928433 LKEKKETR 8 Unmodified _LKEKKETR_ 0 0 0 LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|17|1|anti-sense LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|17|1|anti-sense LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|17|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.3141479492188 2 516.314023 1030.61349 0.35873 0.00018522 -0.01389 -7.1715E-06 0.34484 0.00017805 516.3139221163403 90.517 0.39831 94.364 94.295 94.693 3.847 94 55 2 0 0 0 0.82752 1 21491 21491 2.3027 0 1 721550 22793 15671 14249 14258 27003 27003 0.09941120742928433 LKEKKREK 8 Unmodified _LKEKKREK_ 0 0 0 nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF nc|ENSG00000091656|Q86UP3-3|ZFHX4 nc|ENSG00000091656|Q86UP3-3|ZFHX4 MSMS UPN46_class_I_Rep_3 1 529.7987060546875 2 529.837665 1057.66078 NaN NaN NaN NaN NaN NaN NaN 24.351 1 24.351 23.851 24.851 0 0 0 0 0.40753 1 3188 3188 0.6015 0 1 22794 6849 14250 14259 27004 27004 0.13425400013920807 LKEKKTRD 8 Unmodified _LKEKKTRD_ 0 0 0 REV__L1PA10_dup2998|chr7:92884778-92887052:-|1.9432143589105817|0.0028299130419416|9.42|150.0|23|2|sense REV__L1PA10_dup2998|chr7:92884778-92887052:-|1.9432143589105817|0.0028299130419416|9.42|150.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.3056945800781 2 509.306198 1016.59784 0.31791 0.00016191 -0.64803 -0.00033005 -0.33012 -0.00016813 509.305696996535 87.594 0.30643 87.594 87.386 87.693 0 48 25 2 0 0 0 0.82752 1 20955 20955 0.6015 0 1 419790 + 22795 28958 14251 14260 27005 27005 0.09020834225884755 LKEKLTTA 8 Unmodified _LKEKLTTA_ 0 0 0 HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|199|3|anti-sense HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|199|3|anti-sense HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|199|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.269287109375 2 452.279118 902.543683 0.19108 8.6421E-05 -2.1735 -0.00098301 -1.9824 -0.00089659 452.2782826385932 109.6 0.14716 109.6 109.54 109.69 0 14 11 2 0 0 0 0.82752 1 26938 26938 4.756 0 1 457080 22796 8459 14252 14261 27006 27006 0.08851242074297261 LKEKQTNKKH 10 Unmodified _LKEKQTNKKH_ 0 0 0 L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|157|3|sense L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|157|3|sense L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|157|3|sense MSMS UPN48_class_I_Rep_3 7 627.368408203125 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 59.2 1 62.723 62.223 63.223 3.5231 0 0 0 0.53105 1 12900 12900 1.4819 0 1 22797 9276 14253 14262 27007 27007 0.10891555100079131 LKEKTAEAR 9 Unmodified _LKEKTAEAR_ 0 0 0 REV__L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|88|3|sense REV__L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|88|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3035888671875 2 523.303655 1044.59276 0.32007 0.00016749 -0.08935 -4.6757E-05 0.23072 0.00012074 523.3035242836236 82.628 0.88257 82.628 81.847 82.73 0 188 83 3 0 0 0 0.43982 1 19513 19513 5.7319 0.43497 1 2318900 + 22798 25938 14254 14263 27008 27008 0.07224530363282611 LKEKTAEAR 9 Unmodified _LKEKTAEAR_ 0 0 0 REV__L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|88|3|sense REV__L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|88|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3034057617188 2 523.303655 1044.59276 0.32247 0.00016875 -0.21688 -0.00011349 0.1056 5.5259E-05 523.3033859336306 83.117 0.11991 83.117 83.055 83.175 0 33 10 5 0 0 0 0.43982 1 19724 19724 5.7319 5.7319 1 1385500 + 22799 25938 14254 14263 27009 27009 0.07224530363282611 LKEKTAEAR 9 Unmodified _LKEKTAEAR_ 0 0 0 REV__L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|88|3|sense REV__L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|88|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 523.303655 1044.59276 0.45913 0.00024026 -0.26879 -0.00014066 0.19034 9.9604E-05 523.3033717303391 79.426 1.4759 83.068 81.975 83.451 3.6423 -0.02431 -4.5321E-06 NaN 5.7319 365 181 3 NaN NaN NaN NaN 0 NaN NaN 0 426850 + 22800 25938 14254 14263 0.07224530363282611 LKEKVKEKTL 10 Unmodified _LKEKVKEKTL_ 0 0 0 REV__ENSG00000169154|ENST00000307599|GOT1L1 REV__ENSG00000169154|ENST00000307599|GOT1L1 MSMS UPN47_class_I_Rep_1 2 608.405517578125 2 608.387188 1214.75982 NaN NaN NaN NaN NaN NaN NaN 108.41 1 112.04 111.54 112.54 3.6355 0 0 0 0.53105 1 26634 26634 2.9952 0.26005 1 + 22801 20298 14255 14264 27010 27010 0.16103378188199713 LKELHIYYR 9 Unmodified _LKELHIYYR_ 0 0 0 L1M5_dup24740|chr7:131475127-131475532:+|1.108610623881304|0.1467303111465222|2.92|151.0|11|3|sense L1M5_dup24740|chr7:131475127-131475532:+|1.108610623881304|0.1467303111465222|2.92|151.0|11|3|sense L1M5_dup24740|chr7:131475127-131475532:+|1.108610623881304|0.1467303111465222|2.92|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 617.8488159179688 2 617.850773 1233.68699 NaN NaN NaN NaN NaN NaN NaN 41.183 1 44.933 44.433 45.433 3.7508 0 0 0 0.37692 1 7497 7497 6.2058 0.47393 1 22802 9125 14256 14265 27011 27011 0.07949669185404673 LKELKTGTV 9 Unmodified _LKELKTGTV_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|52|1|sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|52|1|sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|52|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 494.75714111328125 2 494.8055 987.596446 -0.35382 -0.00017507 0.071761 3.5508E-05 -0.28206 -0.00013956 494.80546340838686 33.866 0.47576 37.141 37.089 37.564 3.2748 41 32 2 0 0 0 0.12477 1 6156 6156 1.6526 0 1 56487 22803 14109 14257 14266 27012 27012 0.10215200137156444 LKELPRVMVI 10 Unmodified _LKELPRVMVI_ 0 0 0 L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|7|1|sense L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|7|1|sense L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 599.3737182617188 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 103.33 1 103.33 102.83 103.83 0 0 0 0 0.53105 1 25216 25216 1.4819 0 1 22804 12571 14258 14267 27013 27013 0.14100357007259845 LKELPRVMVI 10 Unmodified _LKELPRVMVI_ 0 0 0 L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|7|1|sense L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|7|1|sense L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 599.3724365234375 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 87.887 1 91.274 90.774 91.774 3.3873 0 0 0 0.53105 1 22035 22035 1.4819 0 1 22805 12571 14258 14267 27014 27014 0.14100357007259845 LKELREYVLYK 11 Unmodified _LKELREYVLYK_ 0 0 0 REV__nc|ENSG00000184216|P51617-4|IRAK1 REV__nc|ENSG00000184216|P51617-4|IRAK1 MSMS UPN47_class_I_Rep_2 3 485.2863464355469 3 485.285293 1452.83405 NaN NaN NaN NaN NaN NaN NaN 41.225 1 44.59 44.09 45.09 3.3655 0 0 0 0.38417 1 8286 8286 1.3296 0.82369 1 + 22806 32084 14259 14268 27015 27015 0.12574721279702317 LKELREYVLYK 11 Unmodified _LKELREYVLYK_ 0 0 0 REV__nc|ENSG00000184216|P51617-4|IRAK1 REV__nc|ENSG00000184216|P51617-4|IRAK1 MSMS UPN48_class_I_Rep_1 5 485.2863464355469 3 485.285293 1452.83405 NaN NaN NaN NaN NaN NaN NaN 58.046 1 61.533 61.033 62.033 3.487 0 0 0 0.38417 1 12630 12630 1.3296 0.92138 1 + 22807 32084 14259 14268 27016 27016 0.12574721279702317 LKELREYVLYK 11 Unmodified _LKELREYVLYK_ 0 0 0 REV__nc|ENSG00000184216|P51617-4|IRAK1 REV__nc|ENSG00000184216|P51617-4|IRAK1 MSMS UPN48_class_I_Rep_2 6 485.2856750488281 3 485.285293 1452.83405 NaN NaN NaN NaN NaN NaN NaN 52.26 1 55.899 55.399 56.399 3.639 0 0 0 0.38417 1 10838 10838 1.3296 0.87513 1 + 22808 32084 14259 14268 27017 27017 0.12574721279702317 LKELREYVLYK 11 Unmodified _LKELREYVLYK_ 0 0 0 REV__nc|ENSG00000184216|P51617-4|IRAK1 REV__nc|ENSG00000184216|P51617-4|IRAK1 MSMS UPN48_class_I_Rep_2 6 485.2858581542969 3 485.285293 1452.83405 NaN NaN NaN NaN NaN NaN NaN 59.322 1 62.809 62.309 63.309 3.4868 0 0 0 0.38417 1 13002 13002 1.3296 0.82369 1 + 22809 32084 14259 14268 27018 27018 0.12574721279702317 LKEMKKRF 8 Unmodified _LKEMKKRF_ 0 0 0 REV__nc|ENSG00000151914|Q03001-3|DST REV__nc|ENSG00000151914|Q03001-3|DST MSMS UPN48_class_I_Rep_2 6 540.322021484375 2 540.323337 1078.63212 NaN NaN NaN NaN NaN NaN NaN 109.19 1 112.86 112.36 113.36 3.6715 0 0 0 0.40625 1 25981 25981 2.3027 0 1 + 22810 32014 14260 14269 27019 27019 0.09594959113132973 LKENIRAN 8 Unmodified _LKENIRAN_ 0 0 0 L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2773132324219 2 479.277441 956.540328 0.24703 0.0001184 -0.18119 -8.684E-05 0.065843 3.1557E-05 479.2772475079895 79.584 1.1024 79.584 79.333 80.436 0 201 105 3 0 0 0 0.82752 1 18782 18782 4.3292 0 1 479680 22811 10547 14261 14270 27020 27020 0.06031992020314192 LKENIRAN 8 Unmodified _LKENIRAN_ 0 0 0 L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2773132324219 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.82752 1 18527 18527 4.3292 0 1 595600 22812 10547 14261 14270 27021 27021 0.06031992020314192 LKENIRAN 8 Unmodified _LKENIRAN_ 0 0 0 L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|65|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.2774353027344 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.82752 1 18636 18636 4.3292 0 1 542900 22813 10547 14261 14270 27022 27022 0.06031992020314192 LKEPQKQEQT 10 Unmodified _LKEPQKQEQT_ 0 0 0 L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|152|3|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|152|3|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|152|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 614.2907104492188 2 614.830234 1227.64592 0.61299 0.00037689 -0.65115 -0.00040035 -0.038161 -2.3462E-05 614.8295091188666 66.019 0.71233 69.526 69.225 69.937 3.5077 120 52 3 0 0 0 0.84575 1 14931 14931 6.7232 0 1 362950 22814 14592 14262 14271 27023 27023 0.041198633552767205 LKEQKERA 8 Unmodified _LKEQKERA_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN46_class_I_Rep_3 1 501.2906799316406 2 501.290548 1000.56654 0.29592 0.00014834 0.23862 0.00011962 0.53454 0.00026796 501.29051193492387 80.602 0.19055 80.602 80.46 80.651 0 61 21 4 0 0 0 0.82752 1 18972 18972 6.7232 0 1 948300 22815 5107 14263 14272 27024 27024 0.06628261191792717 LKEQKERA 8 Unmodified _LKEQKERA_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN46_class_I_Rep_3 1 501.29071044921875 2 501.290548 1000.56654 0.29669 0.00014873 0.31571 0.00015826 0.6124 0.00030699 501.29061207079064 80.952 0.46568 80.952 80.643 81.109 0 140 48 4 0 0 0 0.82752 2 19045 19045;19083 6.7232 0 1 1784600 22816 5107 14263 14272 27025;27026 27025 0.06628261191792717 LKEQKERA 8 Unmodified _LKEQKERA_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN46_class_I_Rep_3 1 501.290771484375 2 501.290548 1000.56654 0.29795 0.00014936 0.47397 0.00023759 0.77191 0.00038695 501.2906204527461 81.216 0.62479 81.216 80.894 81.519 0 132 64 4 0 0 0 0.82752 1 19191 19191 6.7232 0 1 1004600 22817 5107 14263 14272 27027 27027 0.06628261191792717 LKEQNVAF 8 Unmodified _LKEQNVAF_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS UPN46_class_I_Rep_3 1 474.7611083984375 2 474.761092 947.507631 0.18988 9.0149E-05 -0.073496 -3.4893E-05 0.11639 5.5256E-05 474.7609858280357 64.963 0.66415 64.963 64.641 65.305 0 113 68 2 0 0 0 0.82752 2 14631 14631;14710 15.847 0 1 430420 22818 5242 14264 14273 27028;27029 27028 0.031777848974684275 LKEQRQARKER 11 Unmodified _LKEQRQARKER_ 0 0 0 nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X nc|ENSG00000123575|Q6PEV8-2|FAM199X MULTI-MSMS UPN46_class_I_Rep_3 1 481.28363037109375 3 481.283057 1440.82734 0.27015 0.00013002 0.77859 0.00037472 1.0487 0.00050474 481.2833324459358 98.493 0.24911 98.493 98.356 98.605 0 52 29 3 0 0 0 0.68219 1 23989 23989 0.32927 0 1 1343500 22819 2429 14265 14274 27030 27030 0.12456221171669313 LKERKHKPQ 9 Unmodified _LKERKHKPQ_ 0 0 0 ENSG00000204954|ENST00000378090|UQCC6;ENST00000543740.6_1_12:104345303-104359310:-|nuORF;ENST00000552460.1_1_12:104345303-104349535:-|nuORF ENSG00000204954|ENST00000378090|UQCC6 ENSG00000204954|ENST00000378090|UQCC6 MULTI-MSMS UPN48_class_I_Rep_3 7 582.353515625 2 582.354014 1162.69348 0.49268 0.00028691 -1.2015 -0.00069969 -0.70881 -0.00041278 582.3532046528272 95.894 0.13451 99.803 99.753 99.887 3.9084 30 18 3 0 0 0 0.48846 1 22730 22730 1.8442 1.8442 1 249270 22820 5546 14266 14275 27031 27031 0.11863607136797327 LKERKHKPQ 9 Unmodified _LKERKHKPQ_ 0 0 0 ENSG00000204954|ENST00000378090|UQCC6;ENST00000543740.6_1_12:104345303-104359310:-|nuORF;ENST00000552460.1_1_12:104345303-104349535:-|nuORF ENSG00000204954|ENST00000378090|UQCC6 ENSG00000204954|ENST00000378090|UQCC6 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 582.354014 1162.69348 0.51888 0.00030217 -1.0931 -0.0006366 -0.57426 -0.00033443 582.3532227239821 99.687 0.1999 99.687 99.559 99.759 0 -0.017253 3.7338E-05 NaN 1.8442 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 258680 22821 5546 14266 14275 0.11863607136797327 LKERKWLRWL 10 Unmodified _LKERKWLRWL_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|88|3|sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|88|3|sense MSMS UPN47_class_I_Rep_2 3 476.32794189453125 3 476.625984 1426.85612 NaN NaN NaN NaN NaN NaN NaN 107.46 1 110.99 110.49 111.49 3.5345 0 0 0 0.53105 1 26003 26003 1.7423 0.14999 1 + 22822 23548 14267 14276 27032 27032 0.1597699053877477 LKERKWLRWL 10 Unmodified _LKERKWLRWL_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|88|3|sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|88|3|sense MSMS UPN48_class_I_Rep_1 5 476.9573669433594 3 476.625984 1426.85612 NaN NaN NaN NaN NaN NaN NaN 105.25 1 108.87 108.37 109.37 3.6247 0 0 0 0.53105 1 25356 25356 0.62683 0.17231 1 + 22823 23548 14267 14276 27033 27033 0.1597699053877477 LKERKWLRWL 10 Unmodified _LKERKWLRWL_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|88|3|sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|88|3|sense MSMS UPN48_class_I_Rep_3 7 476.6244812011719 3 476.625984 1426.85612 NaN NaN NaN NaN NaN NaN NaN 105.67 1 109.37 108.87 109.87 3.702 0 0 0 0.53105 1 24935 24935 0.62683 0.17231 1 + 22824 23548 14267 14276 27034 27034 0.1597699053877477 LKERLRNRKTN 11 Unmodified _LKERLRNRKTN_ 0 0 0 REV__ENSG00000243147|ENST00000296102|MRPL33 REV__ENSG00000243147|ENST00000296102|MRPL33 MULTI-MSMS UPN48_class_I_Rep_1 5 476.6235656738281 3 476.623303 1426.84808 0.10205 4.864E-05 1.1098 0.00052894 1.2118 0.00057758 476.6237422847598 104.89 0.1376 108.51 108.46 108.6 3.6247 26 19 2 0 0 0 0.66092 1 25286 25286 2.2527 0.16876 1 1833400 + 22825 21334 14268 14277 27035 27035 0.15172811551337873 LKERPKYR 8 Unmodified _LKERPKYR_ 0 0 0 REV__nc|ENSG00000145949|Q86YV6-2|MYLK4 REV__nc|ENSG00000145949|Q86YV6-2|MYLK4 MSMS UPN48_class_I_Rep_1 5 545.3294677734375 2 545.330008 1088.64546 NaN NaN NaN NaN NaN NaN NaN 105.67 1 109.3 108.8 109.8 3.6277 0 0 0 0.40625 1 25458 25458 2.3027 0 1 + 22826 19356 14269 14278 27036 27036 0.10468533216749165 LKERQNLVPS 10 Unmodified _LKERQNLVPS_ 0 0 0 Charlie29a_dup676|chr5:69987067-69987317:+|1.615986451210485|0.2322184638246604|2.8|151.0|17|3|anti-sense Charlie29a_dup676|chr5:69987067-69987317:+|1.615986451210485|0.2322184638246604|2.8|151.0|17|3|anti-sense Charlie29a_dup676|chr5:69987067-69987317:+|1.615986451210485|0.2322184638246604|2.8|151.0|17|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 591.8455810546875 2 592.343312 1182.67207 0.41075 0.00024331 2.8729 0.0017017 3.2837 0.0019451 592.3462692022694 108.38 0.15655 112.02 111.95 112.11 3.6313 24 11 3 0 0 0 0.84575 1 26243 26243 6.2058 2.2614 1 1798100 22827 510 14270 14279 27037 27037 0.08804177317415451 LKERQRRK 8 Unmodified _LKERQRRK_ 0 0 0 nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B;nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A nc|ENSG00000173011|Q86TJ2-3|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B MSMS UPN48_class_I_Rep_3 7 557.8140869140625 2 557.351806 1112.68906 NaN NaN NaN NaN NaN NaN NaN 90.823 1 94.67 94.17 95.17 3.847 0 0 0 0.40753 1 21539 21539 0.6015 0 1 22828 4605 14271 14280 27038 27038 0.13722142713891117 LKERSWFR 8 Unmodified _LKERSWFR_ 0 0 0 REV__ENST00000531837.1_1_11:105947328-105947403:-|nuORF REV__ENST00000531837.1_1_11:105947328-105947403:-|nuORF MSMS UPN46_class_I_Rep_3 1 561.3162841796875 2 561.314358 1120.61416 NaN NaN NaN NaN NaN NaN NaN 46.218 1 46.218 45.718 46.718 0 0 0 0 0.40659 1 9460 9460 1.8442 0.19162 1 + 22829 22860 14272 14281 27039 27039 0.058679601826497674 LKERTHIRK 9 Unmodified _LKERTHIRK_ 0 0 0 REV__ENSG00000234444|ENST00000423484|ZNF736 REV__ENSG00000234444|ENST00000423484|ZNF736 MSMS UPN48_class_I_Rep_3 7 590.8671264648438 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 96.682 1 100.59 100.09 101.09 3.9084 0 0 0 0.39518 1 22917 22917 1.8442 0 1 + 22830 21303 14273 14282 27040 27040 0.13735296028107769 LKESGRRI 8 Unmodified _LKESGRRI_ 0 0 0 REV__nc|ENSG00000104892|Q6P597-2|KLC3 REV__nc|ENSG00000104892|Q6P597-2|KLC3 MSMS UPN48_class_I_Rep_1 5 479.7929382324219 2 479.793258 957.571963 NaN NaN NaN NaN NaN NaN NaN 83.492 1 87.079 86.579 87.579 3.5871 0 0 0 0.40643 1 19968 19968 2.0598 0 1 + 22831 18272 14274 14283 27041 27041 0.0914798477426757 LKESGRRI 8 Unmodified _LKESGRRI_ 0 0 0 REV__nc|ENSG00000104892|Q6P597-2|KLC3 REV__nc|ENSG00000104892|Q6P597-2|KLC3 MSMS UPN48_class_I_Rep_1 5 479.7931823730469 2 479.793258 957.571963 NaN NaN NaN NaN NaN NaN NaN 83.618 1 87.205 86.705 87.705 3.5871 0 0 0 0.40643 1 20000 20000 2.0598 0 1 + 22832 18272 14274 14283 27042 27042 0.0914798477426757 LKESKGQKQ 9 Unmodified _LKESKGQKQ_ 0 0 0 REV__L1MC3_dup12550|chr20:32500605-32501491:+|1.555014555251443|0.0093581777490939|7.38|151.0|10|1|sense REV__L1MC3_dup12550|chr20:32500605-32501491:+|1.555014555251443|0.0093581777490939|7.38|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 523.3036499023438 2 523.303655 1044.59276 NaN NaN NaN NaN NaN NaN NaN 79.92 1 83.565 83.065 84.065 3.6446 0 0 0 0.37891 1 18994 18994 5.7319 0 1 + 22833 26722 14275 14284 27043 27043 0.07224530363282611 LKEVAGRQG 9 Unmodified _LKEVAGRQG_ 0 0 0 MER54B_dup306|chr12:132640000-132640634:+|1.069974679643637|0.1569264880199214|2.77|151.0|26|1|anti-sense MER54B_dup306|chr12:132640000-132640634:+|1.069974679643637|0.1569264880199214|2.77|151.0|26|1|anti-sense MER54B_dup306|chr12:132640000-132640634:+|1.069974679643637|0.1569264880199214|2.77|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.27740478515625 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.43982 1 18490 18490 5.7319 0.97584 1 595600 22834 16109 14276 14285 27044 27044 0.060319920203255606 LKEVAGRQG 9 Unmodified _LKEVAGRQG_ 0 0 0 MER54B_dup306|chr12:132640000-132640634:+|1.069974679643637|0.1569264880199214|2.77|151.0|26|1|anti-sense MER54B_dup306|chr12:132640000-132640634:+|1.069974679643637|0.1569264880199214|2.77|151.0|26|1|anti-sense MER54B_dup306|chr12:132640000-132640634:+|1.069974679643637|0.1569264880199214|2.77|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.2774658203125 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.43153 1 18746 18746 6.2058 1.8765 1 542900 22835 16109 14276 14285 27045 27045 0.060319920203255606 LKEVGKRN 8 Unmodified _LKEVGKRN_ 0 0 0 ENST00000358387.8_1_5:134235382-134235466:+|nuORF ENST00000358387.8_1_5:134235382-134235466:+|nuORF ENST00000358387.8_1_5:134235382-134235466:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 472.2880859375 2 472.287808 942.561064 0.24587 0.00011612 -0.1028 -4.8553E-05 0.14307 6.7568E-05 472.2879333688999 89.679 0.52381 89.679 89.371 89.895 0 204 47 5 0 0 0 0.82752 1 21615 21615 7.9102 0.62092 1 22080000 22836 6298 14277 14286 27046 27046 0.0874858239999412 LKEVGKRN 8 Unmodified _LKEVGKRN_ 0 0 0 ENST00000358387.8_1_5:134235382-134235466:+|nuORF ENST00000358387.8_1_5:134235382-134235466:+|nuORF ENST00000358387.8_1_5:134235382-134235466:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.287841796875 2 472.287808 942.561064 0.20441 9.654E-05 -0.05093 -2.4053E-05 0.15348 7.2486E-05 472.28772845661115 86.28 1.1071 89.713 89.293 90.4 3.4329 483 151 5 0 0 0 0.82752 1 21439 21439 7.2892 0 1 6101700 22837 6298 14277 14286 27047 27047 0.0874858239999412 LKEVHRSF 8 Unmodified _LKEVHRSF_ 0 0 0 REV__ENSG00000138031|ENST00000679454|ADCY3 REV__ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS UPN48_class_I_Rep_3 7 508.2876281738281 2 508.287808 1014.56106 0.18246 9.2744E-05 -0.28782 -0.00014629 -0.10536 -5.3551E-05 508.2876369189592 48.884 0.5855 52.513 52.309 52.894 3.6291 94 45 3 0 0 0 0.82752 1 9722 9722 14.838 0 1 303910 + 22838 19259 14278 14287 27048 27048 0.05436582399988765 LKEVSLAVPP 10 Unmodified _LKEVSLAVPP_ 0 0 0 REV__MER1B_dup2835|chr8:129935290-129935602:-|1.4189925118237006|0.0056606151200766|7.97|151.0|10|3|sense REV__MER1B_dup2835|chr8:129935290-129935602:-|1.4189925118237006|0.0056606151200766|7.97|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.822021484375 2 526.82115 1051.62775 0.32597 0.00017173 0.96578 0.0005088 1.2918 0.00068052 526.8215333173976 110.58 0.34002 114.11 113.91 114.25 3.5271 76 44 2 0 0 0 0.54822 1 26903 26903 5.7319 1.4026 1 103740 + 22839 31134 14279 14288 27049 27049 0.10399773171229754 LKEYDAQLK 9 Unmodified _LKEYDAQLK_ 0 0 0 REV__ENSG00000155980|ENST00000455537|KIF5A REV__ENSG00000155980|ENST00000455537|KIF5A MULTI-MSMS UPN47_class_I_Rep_1 2 554.3060913085938 2 554.305864 1106.59717 -0.0092169 -5.109E-06 -0.56132 -0.00031114 -0.57054 -0.00031625 554.3055251676403 38.322 0.64388 41.987 41.78 42.424 3.6652 91 47 3 0 0 0 0.30034 1 7356 7356 13.906 0 1 90827 + 22840 19780 14280 14289 27050 27050 0.048139947861727705 LKEYDAQLK 9 Unmodified _LKEYDAQLK_ 0 0 0 REV__ENSG00000155980|ENST00000455537|KIF5A REV__ENSG00000155980|ENST00000455537|KIF5A MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 554.305864 1106.59717 0.043021 2.3847E-05 -0.48007 -0.0002661 -0.43705 -0.00024226 554.3054636533373 38.768 0.65108 42.146 41.933 42.585 3.3785 -0.027391 9.7792E-05 NaN 13.906 74 42 2 NaN NaN NaN NaN 0 NaN NaN 0 110040 + 22841 19780 14280 14289 0.048139947861727705 LKEYILKRRAK 11 Unmodified _LKEYILKRRAK_ 0 0 0 REV__ENST00000600588.1_1_19:6593418-6593715:+|nuORF REV__ENST00000600588.1_1_19:6593418-6593715:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 473.2593078613281 3 473.304911 1416.8929 0.058855 2.7856E-05 1.1829 0.00055988 1.2418 0.00058774 473.3053976875279 53.939 0.424 57.523 57.387 57.811 3.5836 45 29 2 0 0 0 22.551 1 11253 11253 1.0136 0.55906 1 163590 + 22842 23211 14281 14290 27051 27051 0.20113242364686812 LKFAPLTI 8 Unmodified _LKFAPLTI_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|83|2|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|83|2|sense MSMS UPN47_class_I_Rep_1 2 451.7873840332031 2 451.789121 901.56369 NaN NaN NaN NaN NaN NaN NaN 24.565 1 28.294 27.794 28.794 3.7298 0 0 0 0.40746 1 3232 3232 0.69038 0 1 + 22843 24097 14282 14291 27052 27052 0.10897037804932097 LKFAQIND 8 Unmodified _LKFAQIND_ 0 0 0 REV__Charlie1a_dup5260|chr17:80370349-80371675:+|1.6541511750814255|0.3982047743412105|2.05|151.0|40|3|sense REV__Charlie1a_dup5260|chr17:80370349-80371675:+|1.6541511750814255|0.3982047743412105|2.05|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 475.2604064941406 2 474.761092 947.507631 -0.32869 -0.00015605 -1.0981 -0.00052133 -1.4268 -0.00067738 474.76101280312105 42.459 0.99269 45.699 45.236 46.228 3.2394 114 69 2 0 0 0 0.82752 1 8597 8597 2.3027 0 1 151710 + 22844 17340 14283 14292 27053 27053 0.03177784897457059 LKFAWLYL 8 Unmodified _LKFAWLYL_ 0 0 0 REV__L1ME4b_dup18933|chr17:29767654-29767888:-|1.4079052138581103|0.0063127468364648|7.8|151.0|18|2|anti-sense REV__L1ME4b_dup18933|chr17:29767654-29767888:-|1.4079052138581103|0.0063127468364648|7.8|151.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 527.3094482421875 2 527.310221 1052.60589 NaN NaN NaN NaN NaN NaN NaN 97.784 1 97.784 97.284 98.284 0 0 0 0 0.40738 1 23802 23802 0.79363 0 1 + 22845 28273 14284 14293 27054 27054 0.08169013213296239 LKFDKKKHQ 9 Unmodified _LKFDKKKHQ_ 0 0 0 REV__L1PA14_dup348|chr2:121550028-121553389:+|2.335666051997217|0.0391225550627105|5.9|151.0|82|3|sense REV__L1PA14_dup348|chr2:121550028-121553389:+|2.335666051997217|0.0391225550627105|5.9|151.0|82|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.3511962890625 2 586.35094 1170.68733 0.5291 0.00031024 0.40629 0.00023823 0.93539 0.00054846 586.3510962445381 64.331 0.63713 67.839 67.571 68.208 3.5083 82 58 2 0 0 0 0.49026 1 14521 14521 1.6526 0 1 189810 + 22846 29170 14285 14294 27055 27055 0.10881088905284741 LKFFIAIQ 8 Unmodified _LKFFIAIQ_ 0 0 0 REV__L1MA8_dup1438|chr2:230453373-230455060:-|2.706792831951424|0.1725445602743921|3.97|151.0|15|1|sense REV__L1MA8_dup1438|chr2:230453373-230455060:-|2.706792831951424|0.1725445602743921|3.97|151.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 490.3022155761719 2 490.302396 978.590239 NaN NaN NaN NaN NaN NaN NaN 70.327 1 73.698 73.198 74.198 3.3713 0 0 0 0.40746 1 17085 17085 0.69038 0 1 + 22847 25532 14286 14295 27056 27056 0.10008726696253234 LKFFLYYHL 9 Unmodified _LKFFLYYHL_ 0 0 0 L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|150|2|anti-sense L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|150|2|anti-sense L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|150|2|anti-sense MSMS UPN47_class_I_Rep_2 3 622.3463134765625 2 622.347335 1242.68012 NaN NaN NaN NaN NaN NaN NaN 39.132 1 42.51 42.01 43.01 3.3785 0 0 0 0.40038 1 7651 7651 0.6015 0 1 22848 15226 14287 14296 27057 27057 0.06848356304840308 LKFFNQQK 8 Unmodified _LKFFNQQK_ 0 0 0 L1MEf_dup422|chr1:155449819-155450525:-|4.061523346423115|0.0531289483699578|6.26|151.0|13|2|sense L1MEf_dup422|chr1:155449819-155450525:-|4.061523346423115|0.0531289483699578|6.26|151.0|13|2|sense L1MEf_dup422|chr1:155449819-155450525:-|4.061523346423115|0.0531289483699578|6.26|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 526.7966918945312 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 21.143 1 24.55 24.05 25.05 3.4074 0 0 0 0.40746 1 2314 2314 0.69038 0 1 22849 13269 14288 14297 27058 27058 0.05773753059793307 LKFFWRVL 8 Unmodified _LKFFWRVL_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|185|3|anti-sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|185|3|anti-sense MSMS UPN47_class_I_Rep_2 3 554.8345336914062 2 554.836937 1107.65932 NaN NaN NaN NaN NaN NaN NaN 83.302 1 86.714 86.214 87.214 3.4116 0 0 0 0.40746 1 20763 20763 0.69038 0 1 + 22850 23731 14289 14298 27059 27059 0.10979810715821259 LKFFYFIE 8 Unmodified _LKFFYFIE_ 0 0 0 REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|304|2|anti-sense REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|304|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.7982788085938 2 553.799686 1105.58482 NaN NaN NaN NaN NaN NaN NaN 38.332 1 41.72 41.22 42.22 3.3879 0 0 0 0.40472 1 7409 7409 4.3292 0 1 + 22851 24759 14290 14299 27060 27060 0.0362500311380245 LKFKLLCL 8 Unmodified _LKFKLLCL_ 0 0 0 REV__Tigger19a_dup1582|chr7:101970044-101970280:-|1.3383257480003994|0.033952037128631|5.3|151.0|17|3|anti-sense REV__Tigger19a_dup1582|chr7:101970044-101970280:-|1.3383257480003994|0.033952037128631|5.3|151.0|17|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 489.31427001953125 2 489.314449 976.614345 0.16332 7.9916E-05 -0.23789 -0.0001164 -0.074569 -3.6488E-05 489.31425185035243 86.049 0.76283 89.662 89.289 90.051 3.613 221 86 3 0 0 0 0.82752 1 20703 20703 0.69038 0 1 1034000 + 22852 32616 14291 14300 27061 27061 0.1251024385827577 LKFKSKLV 8 Unmodified _LKFKSKLV_ 0 0 0 REV__L1MD2_dup2963|chr5:43126175-43127183:-|5.446163433698879|0.1078063617926675|5.66|151.0|16|2|sense REV__L1MD2_dup2963|chr5:43126175-43127183:-|5.446163433698879|0.1078063617926675|5.66|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 482.17022705078125 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 107.11 1 107.11 106.61 107.61 0 0 0 0 0.40746 1 26129 26129 0.69038 0 1 + 22853 27398 14292 14301 27062 27062 0.15008702104660188 LKFKTIPW 8 Unmodified _LKFKTIPW_ 0 0 0 L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|118|3|anti-sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|118|3|anti-sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|118|3|anti-sense MSMS UPN48_class_I_Rep_2 6 516.8164672851562 2 516.81567 1031.61679 NaN NaN NaN NaN NaN NaN NaN 111.62 1 115.29 114.79 115.79 3.6666 0 0 0 0.40746 1 26553 26553 0.69038 0 1 22854 13254 14293 14302 27063 27063 0.10224415587617841 LKFLHFPG 8 Unmodified _LKFLHFPG_ 0 0 0 L1M4a1_dup506|chr3:31590895-31591928:-|1.625581769089249|0.0144011440276732|6.82|151.0|43|1|anti-sense L1M4a1_dup506|chr3:31590895-31591928:-|1.625581769089249|0.0144011440276732|6.82|151.0|43|1|anti-sense L1M4a1_dup506|chr3:31590895-31591928:-|1.625581769089249|0.0144011440276732|6.82|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 479.7792053222656 2 479.779088 957.543623 NaN NaN NaN NaN NaN NaN NaN 74.156 1 77.55 77.05 78.05 3.3937 0 0 0 0.40738 1 18241 18241 0.79363 0 1 22855 8960 14294 14303 27064 27064 0.06315286864992231 LKFLHLPRWHI 11 Unmodified _LKFLHLPRWHI_ 0 0 0 LTR85a_dup1359|chr12:92129562-92129843:+|1.6160500500309445|0.0509663227213225|4.99|151.0|14|2|anti-sense LTR85a_dup1359|chr12:92129562-92129843:+|1.6160500500309445|0.0509663227213225|4.99|151.0|14|2|anti-sense LTR85a_dup1359|chr12:92129562-92129843:+|1.6160500500309445|0.0509663227213225|4.99|151.0|14|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 486.95904541015625 3 487.294346 1458.86121 0.14127 6.8839E-05 -1.5641 -0.00076219 -1.4229 -0.00069335 487.2936130747621 95.021 0.12148 98.638 98.541 98.662 3.6167 17 15 2 0 0 0 22.551 1 22875 22875 0.50596 0.051438 1 69586 22856 15718 14295 14304 27065 27065 0.15013294401433086 LKFLSDASV 9 Unmodified _LKFLSDASV_ 0 0 0 ENSG00000123610|ENST00000243347|TNFAIP6 ENSG00000123610|ENST00000243347|TNFAIP6 ENSG00000123610|ENST00000243347|TNFAIP6 MULTI-SECPEP UPN47_class_I_Rep_3 4 489.8057861328125 2 490.276575 978.538597 0.18192 8.9193E-05 3.2007 0.0015692 3.3827 0.0016584 490.2766542298573 64.034 0.15971 67.208 67.083 67.243 3.1741 14 11 2 0 0 0 0.12026 1 15280 15280 8.1555 0 1 57357 22857 2433 14296 14305 27066 27066 0.04846938211710494 LKFLTVLTS 9 Unmodified _LKFLTVLTS_ 0 0 0 REV__nc|ENSG00000106144|P42575-2|CASP2 REV__nc|ENSG00000106144|P42575-2|CASP2 MSMS UPN48_class_I_Rep_3 7 511.3183288574219 2 511.318243 1020.62193 NaN NaN NaN NaN NaN NaN NaN 72.833 1 76.37 75.87 76.87 3.5373 0 0 0 0.39428 1 17004 17004 2.0598 0 1 + 22858 18318 14297 14306 27067 27067 0.11244674659553766 LKFLWNHRR 9 Unmodified _LKFLWNHRR_ 0 0 0 L1MA4_dup2608|chr4:106177138-106180401:-|1.048406138261794|0.0321968156672146|5.03|151.0|67|2|sense L1MA4_dup2608|chr4:106177138-106180401:-|1.048406138261794|0.0321968156672146|5.03|151.0|67|2|sense L1MA4_dup2608|chr4:106177138-106180401:-|1.048406138261794|0.0321968156672146|5.03|151.0|67|2|sense MSMS UPN47_class_I_Rep_2 3 635.3704833984375 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 95.634 1 99.109 98.609 99.609 3.4753 0 0 0 0.4007 1 23533 23533 0.52476 0 1 22859 9671 14298 14307 27068 27068 0.10183019610576594 LKFNHINN 8 Unmodified _LKFNHINN_ 0 0 0 L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|53|2|sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|53|2|sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|53|2|sense MSMS UPN47_class_I_Rep_2 3 500.2706604003906 2 500.272158 998.529764 NaN NaN NaN NaN NaN NaN NaN 65.036 1 68.292 67.792 68.792 3.2556 0 0 0 0.40625 1 15533 15533 2.3027 0 1 22860 13242 14299 14308 27069 27069 0.030440093658853584 LKFRKYRKH 9 Unmodified _LKFRKYRKH_ 0 0 0 L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|136|3|sense L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|136|3|sense L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|136|3|sense MSMS UPN46_class_I_Rep_3 1 638.3961181640625 2 638.393474 1274.77239 NaN NaN NaN NaN NaN NaN NaN 70.313 1 70.313 69.813 70.813 0 0 0 0 0.4007 1 16153 16153 0.52476 0 1 22861 14890 14300 14309 27070 27070 0.14599879161733043 LKFVVSCSC 9 Unmodified _LKFVVSCSC_ 0 0 0 L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|154|3|anti-sense L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|154|3|anti-sense L1MC2_dup457|chr2:3439545-3441914:-|1.2365295804176424|0.0777940555278843|3.99|150.0|154|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.2449645996094 2 493.245906 984.477259 -0.53839 -0.00026556 0.60157 0.00029672 0.063174 3.1161E-05 493.2461292535819 22.06 0.82432 25.41 25.14 25.964 3.3496 84 73 2 0 0 0 0.48643 1 2647 2647 2.0598 0 1 54139 22862 11261 14301 14310 27071 27071 -0.015600330835809473 LKGALYVL 8 Unmodified _LKGALYVL_ 0 0 0 REV__MER57F_dup136|chr5:170272325-170272592:+|1.592691958098035|0.2373989912836778|2.75|151.0|14|1|anti-sense REV__MER57F_dup136|chr5:170272325-170272592:+|1.592691958098035|0.2373989912836778|2.75|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 438.7801208496094 2 438.781296 875.54804 NaN NaN NaN NaN NaN NaN NaN 107.83 1 111.51 111.01 112.01 3.6724 0 0 0 0.40581 1 26438 26438 2.8892 0 1 + 22863 31455 14302 14311 27072 27072 0.10528751287893101 LKGGCFLYFQ 10 Unmodified _LKGGCFLYFQ_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MSMS UPN48_class_I_Rep_3 7 588.3004760742188 2 588.299527 1174.5845 NaN NaN NaN NaN NaN NaN NaN 45.543 1 49.18 48.68 49.68 3.6369 0 0 0 0.53105 1 8732 8732 3.2813 0.97858 1 22864 7069 14303 14312 27073 27073 0.004192601222939629 LKGGKKAL 8 Unmodified _LKGGKKAL_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-SECPEP UPN46_class_I_Rep_3 1 408.24322509765625 2 407.779088 813.543623 0.064936 2.648E-05 -1.8155 -0.00074033 -1.7506 -0.00071385 407.7784674841127 109.2 0.1972 109.2 109.12 109.31 0 16 14 2 0 0 0 0.72333 1 26773 26773 0 0 1 645820 + 22865 20424 14304 14313 27074 27074 0.12939286864968835 LKGHQKSN 8 Unmodified _LKGHQKSN_ 0 0 0 nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 nc|ENSG00000156535|Q6YHK3-2|CD109 nc|ENSG00000156535|Q6YHK3-2|CD109 MSMS UPN46_class_I_Rep_3 1 456.7107238769531 2 456.256508 910.498464 NaN NaN NaN NaN NaN NaN NaN 25.953 1 25.953 25.453 26.453 0 0 0 0 0.40746 1 3639 3639 0.69038 0 1 22866 3735 14305 14314 27075 27075 0.039634363317986754 LKGKHRNL 8 Unmodified _LKGKHRNL_ 0 0 0 ENST00000497228.5_1_1:171285425-171292161:+|nuORF ENST00000497228.5_1_1:171285425-171292161:+|nuORF ENST00000497228.5_1_1:171285425-171292161:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 483.303955078125 2 483.303793 964.593033 0.40182 0.0001942 -0.23392 -0.00011305 0.1679 8.1146E-05 483.3035482160609 107.8 0.1742 111.33 111.26 111.43 3.5345 51 18 4 0 0 0 0.82752 1 26090 26090 5.2307 0 1 30140000 22867 7108 14306 14315 27076 27076 0.10931994873783424 LKGKHSLPV 9 Unmodified _LKGKHSLPV_ 0 0 0 REV__ENST00000485401.5_1_1:75214440-75227355:+|nuORF REV__ENST00000485401.5_1_1:75214440-75227355:+|nuORF MSMS UPN47_class_I_Rep_1 2 489.8066711425781 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 47.307 1 51.002 50.502 51.502 3.6951 0 0 0 0.4007 1 10117 10117 0.52476 0 1 + 22868 19933 14307 14316 27077 27077 0.1125034343946254 LKGKYIIK 8 Unmodified _LKGKYIIK_ 0 0 0 REV__ENST00000505838.1_1_4:103986693-103986825:-|nuORF REV__ENST00000505838.1_1_4:103986693-103986825:-|nuORF MSMS UPN47_class_I_Rep_1 2 481.3371887207031 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 102.89 1 106.67 106.17 107.17 3.7788 0 0 0 0.40746 1 25312 25312 0.69038 0 1 + 22869 22716 14308 14317 27078 27078 0.15008702104660188 LKGLHWGY 8 Unmodified _LKGLHWGY_ 0 0 0 MLT1D_dup19518|chr20:32082901-32083366:-|1.0886277230661707|0.3183291282117702|1.77|148.0|37|2|anti-sense MLT1D_dup19518|chr20:32082901-32083366:-|1.0886277230661707|0.3183291282117702|1.77|148.0|37|2|anti-sense MLT1D_dup19518|chr20:32082901-32083366:-|1.0886277230661707|0.3183291282117702|1.77|148.0|37|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.26678466796875 2 487.266345 972.518136 -0.07318 -3.5658E-05 0.045871 2.2352E-05 -0.027309 -1.3307E-05 487.2662576065727 43.025 1.044 46.383 45.976 47.02 3.358 105 70 2 0 0 0 0.82752 1 8734 8734 5.2307 0 1 115540 22870 16346 14309 14318 27079 27079 0.03077812342564812 LKGQETTDAGE 11 Unmodified _LKGQETTDAGE_ 0 0 0 L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|55|2|sense;L1PA6_dup2349|chr6:35336613-35338792:-|1.015041648427637|0.0131295051638334|6.27|151.0|56|3|sense;L1PA7_dup11822|chr15:75909776-75913129:-|1.3220745464953787|0.105194884499673|3.65|151.0|90|3|sense L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|55|2|sense L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|55|2|sense MSMS UPN48_class_I_Rep_1 5 574.7772216796875 2 574.775125 1147.5357 NaN NaN NaN NaN NaN NaN NaN 73.763 1 77.244 76.744 77.744 3.4812 0 0 0 0.38417 1 17400 17400 1.0715 0 1 22871 14590 14310 14319 27080 27080 -0.03216981703735655 LKGSLRGFSG 10 Unmodified _LKGSLRGFSG_ 0 0 0 REV__ENST00000535414.5_1_1:101360566-101360689:-|nuORF REV__ENST00000535414.5_1_1:101360566-101360689:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 511.29156494140625 2 511.293091 1020.57163 -0.18654 -9.5377E-05 -1.2235 -0.00062558 -1.4101 -0.00072096 511.2922792884179 35.034 0.71104 38.72 38.415 39.126 3.6859 80 52 2 0 0 0 0.56374 1 6356 6356 1.1933 0.50296 1 120870 + 22872 22886 14311 14320 27081 27081 0.06216565054444345 LKGSLRGFSG 10 Unmodified _LKGSLRGFSG_ 0 0 0 REV__ENST00000535414.5_1_1:101360566-101360689:-|nuORF REV__ENST00000535414.5_1_1:101360566-101360689:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 511.2924499511719 2 511.293091 1020.57163 -0.27168 -0.00013891 -1.0894 -0.00055702 -1.3611 -0.00069593 511.29244125461645 35.296 0.69312 38.721 38.47 39.163 3.4253 63 44 2 0 0 0 0.56374 1 6443 6443 1.1933 0.50296 1 109880 + 22873 22886 14311 14320 27082 27082 0.06216565054444345 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_1 5 451.2626953125 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 17.481 1 21.007 20.507 21.507 3.5261 0 0 0 0.40746 1 1023 1023 0.69038 0 1 + 22874 23934 14312 14321 27083 27083 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_1 5 451.262939453125 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 115.61 1 119.23 118.73 119.73 3.6282 0 0 0 0.40746 1 28129 28129 0.69038 0 1 + 22875 23934 14312 14321 27084 27084 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_1 5 451.2632751464844 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 116.39 1 120.01 119.51 120.51 3.6254 0 0 0 0.40746 1 28340 28340 0.69038 0 1 + 22876 23934 14312 14321 27085 27085 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_1 5 451.2630920410156 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 119.31 1 122.93 122.43 123.43 3.6189 0 0 0 0.40746 1 29119 29119 0.69038 0 1 + 22877 23934 14312 14321 27086 27086 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_2 6 451.2628479003906 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 117.3 1 120.96 120.46 121.46 3.6607 0 0 0 0.40746 1 28109 28109 0.69038 0 1 + 22878 23934 14312 14321 27087 27087 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_2 6 451.26312255859375 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 119.33 1 122.99 122.49 123.49 3.6652 0 0 0 0.40746 1 28636 28636 0.69038 0 1 + 22879 23934 14312 14321 27088 27088 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_3 7 451.262939453125 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 114.47 1 118.12 117.62 118.62 3.6511 0 0 0 0.40746 1 27217 27217 0.69038 0 1 + 22880 23934 14312 14321 27089 27089 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_3 7 451.26312255859375 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 115.57 1 119.22 118.72 119.72 3.6433 0 0 0 0.40746 1 27505 27505 0.69038 0 1 + 22881 23934 14312 14321 27090 27090 0.05603917030782668 LKGVKPME 8 Unmodified _LKGVKPME_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|32|1|sense MSMS UPN48_class_I_Rep_3 7 451.2628479003906 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 119.57 1 123.14 122.64 123.64 3.566 0 0 0 0.40746 1 28417 28417 0.69038 0 1 + 22882 23934 14312 14321 27091 27091 0.05603917030782668 LKGYQRRW 8 Unmodified _LKGYQRRW_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS UPN47_class_I_Rep_3 4 554.1763916015625 2 553.814525 1105.6145 NaN NaN NaN NaN NaN NaN NaN 42.836 1 46.075 45.575 46.575 3.2394 0 0 0 0.40746 1 8829 8829 0.69038 0 1 22883 5064 14313 14322 27092 27092 0.0659137990248837 LKHATIWTS 9 Unmodified _LKHATIWTS_ 0 0 0 L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|15|2|sense L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|15|2|sense L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 528.795166015625 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 25.08 1 28.829 28.329 29.329 3.7495 0 0 0 0.38639 1 3383 3383 3.9444 2.1002 1 22884 10368 14314 14323 27093 27093 0.0508144919717779 LKHDIRSF 8 Unmodified _LKHDIRSF_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|108|2|sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|108|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.2875061035156 2 508.287808 1014.56106 0.18246 9.2744E-05 -0.28782 -0.00014629 -0.10536 -5.3551E-05 508.2876369189592 48.884 0.5855 52.513 52.309 52.894 3.6291 94 45 3 0 0 0 0.82752 1 9717 9717 19.257 4.0085 1 303910 + 22885 24008 14315 14324 27094 27094 0.05436582400000134 LKHFFILD 8 Unmodified _LKHFFILD_ 0 0 0 MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|28|3|sense MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|28|3|sense MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|28|3|sense MSMS UPN47_class_I_Rep_1 2 516.7969970703125 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 112.1 1 115.68 115.18 116.18 3.572 0 0 0 0.40746 1 27664 27664 0.69038 0 1 22886 16033 14316 14325 27095 27095 0.06587538690882866 LKHFPNVFL 9 Unmodified _LKHFPNVFL_ 0 0 0 L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|107|3|anti-sense L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|107|3|anti-sense L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|107|3|anti-sense MSMS UPN47_class_I_Rep_1 2 557.8245239257812 2 557.824027 1113.6335 NaN NaN NaN NaN NaN NaN NaN 22.415 1 26.09 25.59 26.59 3.6749 0 0 0 0.39518 1 2601 2601 1.8442 0.36234 1 22887 9664 14317 14326 27096 27096 0.08122916473553232 LKHLSLRW 8 Unmodified _LKHLSLRW_ 0 0 0 L1MA5_dup3584|chr13:72751151-72751876:+|1.599696680889078|0.252597397393615|2.66|150.0|30|1|anti-sense L1MA5_dup3584|chr13:72751151-72751876:+|1.599696680889078|0.252597397393615|2.66|150.0|30|1|anti-sense L1MA5_dup3584|chr13:72751151-72751876:+|1.599696680889078|0.252597397393615|2.66|150.0|30|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.821533203125 2 526.821818 1051.62908 0.16277 8.5749E-05 -0.26669 -0.0001405 -0.10393 -5.4752E-05 526.8216095725545 34.122 0.10798 34.122 34.065 34.173 0 7 5 2 0 0 0 0.82752 1 6050 6050 0.69038 0 1 395770 22888 9905 14318 14327 27097 27097 0.10533452050640335 LKHLWENL 8 Unmodified _LKHLWENL_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;chr1:39215429-39231182|151|40.97|0.47|6.44|+|ENST00000671089|MACF1,MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MSMS UPN47_class_I_Rep_2 3 527.2747192382812 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 27.808 1 31.306 30.806 31.806 3.4986 0 0 0 0.40746 1 4228 4228 0.69038 0 1 22889 2569 14319 14328 27098 27098 0.05773753059793307 LKHQRAQA 8 Unmodified _LKHQRAQA_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN47_class_I_Rep_2 3 476.27850341796875 2 476.277775 950.540997 -0.26455 -0.000126 -0.43504 -0.0002072 -0.69959 -0.0003332 476.2775824862099 14.028 0.33339 17.415 17.3 17.633 3.3871 55 37 2 0 0 0 0.82752 1 486 486 2.3027 0.4585 1 58879 + 22890 21033 14320 14329 27099 27099 0.06374831460027508 LKHRQLFK 8 Unmodified _LKHRQLFK_ 0 0 0 REV__L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|63|3|sense REV__L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|63|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 535.3347778320312 2 535.335093 1068.65563 0.34181 0.00018298 0.35808 0.00019169 0.69989 0.00037467 535.3352379255007 109.28 0.56401 112.92 112.75 113.31 3.6321 141 70 3 0 0 0 0.72333 1 26486 26486 0.69038 0 1 4951600 + 22891 28688 14321 14330 27100 27100 0.12405140941996251 LKHRQLFK 8 Unmodified _LKHRQLFK_ 0 0 0 REV__L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|63|3|sense REV__L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|63|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 535.335093 1068.65563 0.44824 0.00023996 0.28215 0.00015104 0.73039 0.000391 535.8364475467594 109.61 0.058601 113.29 113.27 113.33 3.6715 0.24846 8.2219E-05 NaN 0.69038 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 220300 + 22892 28688 14321 14330 0.12405140941996251 LKIAFMKV 8 Unmodified _LKIAFMKV_ 0 0 0 REV__ENST00000396024.7_1_15:60682488-60690176:-|nuORF REV__ENST00000396024.7_1_15:60682488-60690176:-|nuORF MSMS UPN48_class_I_Rep_1 5 475.2986755371094 2 475.298799 948.583045 NaN NaN NaN NaN NaN NaN NaN 81.117 1 84.679 84.179 85.179 3.5624 0 0 0 0.40746 1 19336 19336 0.69038 0 1 + 22893 22118 14322 14331 27101 27101 0.10669670824199784 LKIDTKKYL 9 Unmodified _LKIDTKKYL_ 0 0 0 REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|46|2|sense REV__MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|46|2|sense MSMS UPN47_class_I_Rep_3 4 561.3486328125 2 561.350074 1120.6856 NaN NaN NaN NaN NaN NaN NaN 67.747 1 70.938 70.438 71.438 3.1914 0 0 0 0.39518 1 16421 16421 1.8442 0 1 + 22894 31449 14323 14332 27102 27102 0.13008035096640924 LKIELSLHSLV 11 Unmodified _LKIELSLHSLV_ 0 0 0 REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|21|3|sense REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 626.3886108398438 2 626.387188 1250.75982 NaN NaN NaN NaN NaN NaN NaN 105.32 1 109.06 108.56 109.56 3.7395 0 0 0 0.38417 1 25852 25852 4.897 0 1 + 22895 27194 14324 14333 27103 27103 0.14447378188197035 LKIELSLHSLV 11 Unmodified _LKIELSLHSLV_ 0 0 0 REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|21|3|sense REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 626.3859252929688 2 626.387188 1250.75982 NaN NaN NaN NaN NaN NaN NaN 104.94 1 108.48 107.98 108.98 3.5327 0 0 0 0.38417 1 25473 25473 4.897 0 1 + 22896 27194 14324 14333 27104 27104 0.14447378188197035 LKIFASVFRR 10 Unmodified _LKIFASVFRR_ 0 0 0 L1M5_dup27786|chr8:140212233-140212767:-|1.1840998597196897|0.0092184664536733|7.01|151.0|34|3|anti-sense L1M5_dup27786|chr8:140212233-140212767:-|1.1840998597196897|0.0092184664536733|7.01|151.0|34|3|anti-sense L1M5_dup27786|chr8:140212233-140212767:-|1.1840998597196897|0.0092184664536733|7.01|151.0|34|3|anti-sense MSMS UPN46_class_I_Rep_3 1 412.9329528808594 3 412.92403 1235.75026 NaN NaN NaN NaN NaN NaN NaN 50.264 1 50.264 49.764 50.764 0 0 0 0 0.53105 1 10613 10613 0.62683 0.12087 1 22897 9132 14325 14334 27105 27105 0.1418165469331143 LKIFQEEN 8 Unmodified _LKIFQEEN_ 0 0 0 nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 MSMS UPN48_class_I_Rep_1 5 511.2529602050781 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 28.623 1 32.18 31.68 32.68 3.5571 0 0 0 0.40746 1 3857 3857 0.69038 0 1 22898 3055 14326 14335 27106 27106 0.019777502063334396 LKIINGKRW 9 Unmodified _LKIINGKRW_ 0 0 0 REV__L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|22|1|sense REV__L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|22|1|sense MSMS UPN47_class_I_Rep_3 4 564.7443237304688 2 564.356025 1126.6975 NaN NaN NaN NaN NaN NaN NaN 111.94 1 115.47 114.97 115.97 3.5207 0 0 0 0.39428 1 27491 27491 2.0598 0 1 + 22899 24775 14327 14336 27107 27107 0.13921696630518454 LKIKALSLA 9 Unmodified _LKIKALSLA_ 0 0 0 FLAM_C_dup13321|chr10:26534155-26534314:+|1.1459237751967664|0.0867514855238254|3.72|151.0|1|1|sense FLAM_C_dup13321|chr10:26534155-26534314:+|1.1459237751967664|0.0867514855238254|3.72|151.0|1|1|sense FLAM_C_dup13321|chr10:26534155-26534314:+|1.1459237751967664|0.0867514855238254|3.72|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.8295593261719 2 478.828778 955.643003 0.16611 7.9537E-05 0.040829 1.955E-05 0.20694 9.9087E-05 478.82875497887716 49.275 1.1715 52.992 52.432 53.604 3.7175 135 74 2 0 0 0 0.30034 1 9838 9838 13.906 3.0821 1 342980 22900 7776 14328 14337 27108 27108 0.16340684759074975 LKIKKKGELA 10 Unmodified _LKIKKKGELA_ 0 0 0 REV__L1MEh_dup1331|chr7:45043665-45044121:-|1.3833789533983647|0.058050504967123|4.57|151.0|13|2|sense REV__L1MEh_dup1331|chr7:45043665-45044121:-|1.3833789533983647|0.058050504967123|4.57|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 564.3799438476562 2 564.379166 1126.74378 0.49073 0.00027696 0.14462 8.1623E-05 0.63536 0.00035858 564.3790351004214 108.26 0.49495 111.94 111.72 112.21 3.6746 152 57 3 0 0 0 0.56486 1 25752 25752 0.40072 0 1 15350000 + 22901 28797 14329 14338 27109 27109 0.185477167419549 LKIKLIKIRVM 11 Unmodified _LKIKLIKIRVM_ 0 0 0 L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|47|3|sense L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|47|3|sense L1MCa_dup3043|chr7:36665114-36667104:-|2.2712054757191646|0.0165911224344026|7.1|151.0|47|3|sense MSMS UPN46_class_I_Rep_3 1 452.2488708496094 3 452.315871 1353.92578 NaN NaN NaN NaN NaN NaN NaN 57.637 1 57.637 57.137 58.137 0 0 0 0 0.38417 1 12640 12640 0 0 1 22902 11790 14330 14339 27110 27110 0.26297733163164594 LKIKLIYNFT 10 Unmodified _LKIKLIYNFT_ 0 0 0 REV__MER45R_dup392|chr10:38050373-38051839:+|1.6678467038473888|0.3015678940501148|2.47|151.0|10|1|sense REV__MER45R_dup392|chr10:38050373-38051839:+|1.6678467038473888|0.3015678940501148|2.47|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 626.8885498046875 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 103.77 1 107.39 106.89 107.89 3.6209 0 0 0 0.53105 1 25018 25018 3.2813 0 1 + 22903 31334 14331 14340 27111 27111 0.1432858353912252 LKIKRYKEE 9 Unmodified _LKIKRYKEE_ 0 0 0 REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF MSMS UPN47_class_I_Rep_1 2 604.2745971679688 2 603.86388 1205.71321 NaN NaN NaN NaN NaN NaN NaN 37.733 1 41.398 40.898 41.898 3.6652 0 0 0 0.4007 1 7194 7194 0.52476 0.12405 1 + 22904 20230 14332 14341 27112 27112 0.11857938356888553 LKILFFLRM 9 Unmodified _LKILFFLRM_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 590.8668823242188 2 590.86738 1179.72021 0.55003 0.000325 -0.91264 -0.00053925 -0.3626 -0.00021425 590.8665576169693 98.925 0.14343 98.925 98.826 98.969 0 35 16 3 0 0 0 0.50088 1 24082 24082 0.52476 0 1 818490 22905 14517 14333 14342 27113 27113 0.13753579703757168 LKILFFLRM 9 Unmodified _LKILFFLRM_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 590.86738 1179.72021 0.63478 0.00037507 -1.0534 -0.0006224 -0.41858 -0.00024732 590.866458870206 95.414 0.82326 98.889 98.509 99.332 3.4753 -0.027664 -0.00013182 NaN 0.52476 295 116 3 NaN NaN NaN NaN 0 NaN NaN 0 959610 22906 14517 14333 14342 0.13753579703757168 LKILFFLRM 9 Unmodified _LKILFFLRM_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 590.86738 1179.72021 0.50781 0.00030005 -0.83798 -0.00049513 -0.33017 -0.00019509 590.8665748979137 95.574 0.84065 98.984 98.568 99.409 3.4095 0.066902 0.0001227 NaN 0.52476 254 119 4 NaN NaN NaN NaN 0 NaN NaN 0 1016300 22907 14517 14333 14342 0.13753579703757168 LKILFFLRM 9 Unmodified _LKILFFLRM_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 590.86738 1179.72021 0.40999 0.00024225 -0.91314 -0.00053954 -0.50314 -0.00029729 590.8666140635169 95.227 1.0451 98.844 98.477 99.523 3.6167 -0.073147 3.3882E-05 NaN 0.52476 419 133 5 NaN NaN NaN NaN 0 NaN NaN 0 3454600 22908 14517 14333 14342 0.13753579703757168 LKILFFLRM 9 Unmodified _LKILFFLRM_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 590.86738 1179.72021 0.48323 0.00028553 -0.95696 -0.00056544 -0.47373 -0.00027991 590.8665653145301 95.088 1.131 98.869 98.459 99.59 3.7804 -0.047886 -1.7908E-05 NaN 0.52476 456 157 4 NaN NaN NaN NaN 0 NaN NaN 0 3721200 22909 14517 14333 14342 0.13753579703757168 LKILFFLRM 9 Unmodified _LKILFFLRM_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|216|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 590.86738 1179.72021 0.51514 0.00030438 -0.96227 -0.00056857 -0.44713 -0.00026419 590.8665536665071 95.088 0.89971 98.99 98.608 99.508 3.9016 0.073074 -2.418E-05 NaN 0.52476 418 120 4 NaN NaN NaN NaN 0 NaN NaN 0 3208900 22910 14517 14333 14342 0.13753579703757168 LKILVEKFDLM 11 Unmodified _LKILVEKFDLM_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|53|3|sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|53|3|sense MSMS UPN46_class_I_Rep_3 1 450.2738952636719 3 450.268475 1347.7836 NaN NaN NaN NaN NaN NaN NaN 97.183 1 97.183 96.683 97.683 0 0 0 0 0.38417 1 23641 23641 0.08335 0 1 + 22911 27341 14334 14343 27114 27114 0.12361475630336827 LKIVKRVGN 9 Unmodified _LKIVKRVGN_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS UPN47_class_I_Rep_1 2 513.8430786132812 2 513.842751 1025.67095 -0.23632 -0.00012143 0.41336 0.0002124 0.17704 9.0969E-05 513.8429130056071 17.908 0.93137 21.459 20.937 21.869 3.5504 154 112 2 0 0 0 0.50088 1 1465 1465 0.52476 0 1 51047 22912 1421 14335 14344 27115 27115 0.15914007739183944 LKIVLLHLLL 10 Unmodified _LKIVLLHLLL_ 0 0 0 REV__L1M8_dup31|chr1:45646225-45646560:-|1.055293651604552|0.1246756924823377|3.08|151.0|29|3|anti-sense REV__L1M8_dup31|chr1:45646225-45646560:-|1.055293651604552|0.1246756924823377|3.08|151.0|29|3|anti-sense MSMS UPN46_class_I_Rep_3 1 587.9193725585938 2 587.917927 1173.8213 NaN NaN NaN NaN NaN NaN NaN 64.469 1 64.469 63.969 64.969 0 0 0 0 0.53105 1 14511 14511 0 0 1 + 22913 24744 14336 14345 27116 27116 0.24134354678153613 LKIWKKWI 8 Unmodified _LKIWKKWI_ 0 0 0 L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|108|2|sense L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|108|2|sense L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|108|2|sense MSMS UPN48_class_I_Rep_2 6 557.8590087890625 2 557.860412 1113.70627 NaN NaN NaN NaN NaN NaN NaN 62.861 1 66.335 65.835 66.835 3.4738 0 0 0 0.40625 1 14085 14085 2.3027 0 1 22914 14767 14337 14346 27117 27117 0.15396670266977708 LKIYFKRPF 9 Unmodified _LKIYFKRPF_ 0 0 0 REV__L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|172|3|anti-sense REV__L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|172|3|anti-sense MSMS UPN47_class_I_Rep_3 4 606.369384765625 2 606.368601 1210.72265 NaN NaN NaN NaN NaN NaN NaN 85.964 1 89.336 88.836 89.836 3.3716 0 0 0 0.4007 1 21544 21544 0.52476 0 1 + 22915 27848 14338 14347 27118 27118 0.12571751433074496 LKKAKKIMEK 10 Unmodified _LKKAKKIMEK_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS UPN47_class_I_Rep_3 4 406.2659912109375 3 406.265176 1215.7737 NaN NaN NaN NaN NaN NaN NaN 34.561 1 37.825 37.325 38.325 3.2639 0 0 0 0.53105 1 6297 6297 0.77653 0.078866 1 + 22916 17949 14339 14348 27119 27119 0.17444332415607278 LKKALIALKK 10 Unmodified _LKKALIALKK_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MSMS UPN47_class_I_Rep_2 3 563.405517578125 2 563.407727 1124.8009 NaN NaN NaN NaN NaN NaN NaN 83.952 1 87.363 86.863 87.863 3.4116 0 0 0 0.53105 1 20936 20936 0 0 1 22917 2773 14340 14349 27120 27120 0.2434918401829691 LKKALIALKK 10 Unmodified _LKKALIALKK_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MSMS UPN47_class_I_Rep_2 3 563.4051513671875 2 563.407727 1124.8009 NaN NaN NaN NaN NaN NaN NaN 84.128 1 87.54 87.04 88.04 3.4116 0 0 0 0.53105 1 20981 20981 0 0 1 22918 2773 14340 14349 27121 27121 0.2434918401829691 LKKALIALKK 10 Unmodified _LKKALIALKK_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MSMS UPN48_class_I_Rep_1 5 563.4048461914062 2 563.407727 1124.8009 NaN NaN NaN NaN NaN NaN NaN 83.734 1 87.321 86.821 87.821 3.5871 0 0 0 0.53105 1 20033 20033 0.40072 0 1 22919 2773 14340 14349 27122 27122 0.2434918401829691 LKKCFKLL 8 Unmodified _LKKCFKLL_ 0 0 0 ENST00000556380.3_1_14:35480803-35482576:+|nuORF ENST00000556380.3_1_14:35480803-35482576:+|nuORF ENST00000556380.3_1_14:35480803-35482576:+|nuORF MSMS UPN48_class_I_Rep_3 7 496.8197326660156 2 496.819899 991.625244 NaN NaN NaN NaN NaN NaN NaN 64.488 1 67.996 67.496 68.496 3.5083 0 0 0 0.40738 1 14503 14503 0.79363 0 1 22920 7432 14341 14350 27123 27123 0.12909646232571959 LKKCHLML 8 Unmodified _LKKCHLML_ 0 0 0 REV__L1MA8_dup7568|chr11:77744605-77745558:-|1.418315838479098|0.0286169204537494|5.63|151.0|17|2|sense REV__L1MA8_dup7568|chr11:77744605-77745558:-|1.418315838479098|0.0286169204537494|5.63|151.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 493.2872619628906 2 493.287908 984.561264 NaN NaN NaN NaN NaN NaN NaN 62.964 1 66.22 65.72 66.72 3.2558 0 0 0 0.40625 1 14906 14906 2.3027 0 1 + 22921 25570 14342 14351 27124 27124 0.0683654280396695 LKKEENSIY 9 Unmodified _LKKEENSIY_ 0 0 0 L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|31|3|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|31|3|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.3033447265625 2 562.303321 1122.59209 0.35482 0.00019952 -0.34473 -0.00019385 0.010089 5.6733E-06 562.303067114071 55.784 1.0762 59.263 58.78 59.856 3.4785 132 58 3 0 0 0 0.35081 1 12801 12801 10.824 0 1 396420 22922 13162 14343 14352 27125 27125 0.035696909235639396 LKKEIMAF 8 Unmodified _LKKEIMAF_ 0 0 0 L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|39|1|sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|39|1|sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|39|1|sense MSMS UPN47_class_I_Rep_2 3 490.2854309082031 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 53.097 1 56.423 55.923 56.923 3.3266 0 0 0 0.40738 1 11895 11895 0.79363 0 1 22923 10086 14344 14353 27126 27126 0.06708776581911025 LKKFLSVY 8 Unmodified _LKKFLSVY_ 0 0 0 REV__L1ME1_dup1407|chr1:119946986-119948157:+|1.0934034987550365|0.1422289318996366|2.94|151.0|51|1|anti-sense REV__L1ME1_dup1407|chr1:119946986-119948157:+|1.0934034987550365|0.1422289318996366|2.94|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.3058166503906 2 499.307678 996.600803 NaN NaN NaN NaN NaN NaN NaN 49.551 1 53.21 52.71 53.71 3.6592 0 0 0 0.40604 1 10788 10788 2.5775 0 1 + 22924 27607 14345 14354 27127 27127 0.10236709350692763 LKKFRKMF 8 Unmodified _LKKFRKMF_ 0 0 0 ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1 ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENST00000472190.5_1_1:233765551-233807273:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 548.8355712890625 2 549.336247 1096.65794 0.12612 6.928E-05 0.48077 0.0002641 0.60688 0.00033338 549.336433480902 29.598 0.10069 29.598 29.521 29.621 0 9 8 2 0 0 0 0.72333 1 4701 4701 0.69038 0 1 73692 22925 2927 14346 14355 27128 27128 0.11347853355414372 LKKHKTNLPLT 11 Unmodified _LKKHKTNLPLT_ 0 0 0 L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|27|2|sense L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|27|2|sense L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 646.7955932617188 2 646.906079 1291.79761 NaN NaN NaN NaN NaN NaN NaN 54.616 1 54.616 54.116 55.116 0 0 0 0 0.38417 1 11836 11836 4.897 0 1 22926 14012 14347 14356 27129 27129 0.16337889173632902 LKKHKTNLPLT 11 Unmodified _LKKHKTNLPLT_ 0 0 0 L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|27|2|sense L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|27|2|sense L1PA16_dup1025|chr2:32137755-32139261:-|1.8344351919270176|0.0616127098473843|4.9|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 647.0341186523438 2 646.906079 1291.79761 NaN NaN NaN NaN NaN NaN NaN 55.178 1 55.178 54.678 55.678 0 0 0 0 0.38417 1 11988 11988 4.897 0 1 22927 14012 14347 14356 27130 27130 0.16337889173632902 LKKIIEIDKNF 11 Unmodified _LKKIIEIDKNF_ 0 0 0 REV__L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|31|3|sense REV__L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|31|3|sense MSMS UPN47_class_I_Rep_2 3 454.2797546386719 3 454.278139 1359.81259 NaN NaN NaN NaN NaN NaN NaN 49.747 1 53.091 52.591 53.591 3.3431 0 0 0 0.38417 1 10874 10874 0.45452 0.29519 1 + 22928 25225 14348 14357 27131 27131 0.14707336250967273 LKKIKAPL 8 Unmodified _LKKIKAPL_ 0 0 0 ENST00000478160.1_1_3:160945095-160953023:+|nuORF;ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENSG00000169251|ENST00000351193|NMD3 ENST00000478160.1_1_3:160945095-160953023:+|nuORF ENST00000478160.1_1_3:160945095-160953023:+|nuORF MSMS UPN46_class_I_Rep_3 1 455.57928466796875 2 455.826038 909.637523 NaN NaN NaN NaN NaN NaN NaN 60.282 1 60.282 59.782 60.782 0 0 0 0 0.40738 1 13365 13365 0.79363 0 1 22929 4415 14349 14358 27132 27132 0.1790900596724896 LKKIVLISSGR 11 Unmodified _LKKIVLISSGR_ 0 0 0 L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|20|3|sense L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|20|3|sense L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 404.79229736328125 3 405.271207 1212.79179 NaN NaN NaN NaN NaN NaN NaN 63.986 1 67.342 66.842 67.842 3.3557 0 0 0 0.38417 1 15177 15177 0.50596 0.23694 1 22930 9142 14350 14359 27133 27133 0.19390790661964274 LKKKKINVIY 10 Unmodified _LKKKKINVIY_ 0 0 0 L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|37|2|sense L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|37|2|sense L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|37|2|sense MSMS UPN47_class_I_Rep_3 4 624.0591430664062 2 623.915916 1245.81728 NaN NaN NaN NaN NaN NaN NaN 103.63 1 107.14 106.64 107.64 3.5057 0 0 0 0.53105 1 25422 25422 0.40072 0 1 22931 11972 14351 14360 27134 27134 0.2042026518442981 LKKKKINVIY 10 Unmodified _LKKKKINVIY_ 0 0 0 L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|37|2|sense L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|37|2|sense L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|37|2|sense MSMS UPN48_class_I_Rep_2 6 623.9173583984375 2 623.915916 1245.81728 NaN NaN NaN NaN NaN NaN NaN 104.6 1 108.3 107.8 108.8 3.6991 0 0 0 0.53105 1 24759 24759 0.40072 0 1 22932 11972 14351 14360 27135 27135 0.2042026518442981 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 85.849 1 85.849 85.349 86.349 0 0 0 0 0.53105 1 20503 20503 0.15932 0 1 22933 4690;368 14352 14361 27136 27136 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.28 1 113.28 112.78 113.78 0 0 0 0 0.53105 1 27977 27977 0.15932 0 1 22934 4690;368 14352 14361 27137 27137 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN46_class_I_Rep_3 1 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 118.79 1 118.79 118.29 119.29 0 0 0 0 0.53105 1 29498 29498 0.13989 0 1 22935 4690;368 14352 14361 27138 27138 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 26.419 1 30.181 29.681 30.681 3.7624 0 0 0 0.53105 1 3776 3776 0.15932 0 1 22936 4690;368 14352 14361 27139 27139 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.014 1 30.78 30.28 31.28 3.7662 0 0 0 0.53105 1 3955 3955 0.15932 0 1 22937 4690;368 14352 14361 27140 27140 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 27.474 1 31.24 30.74 31.74 3.7662 0 0 0 0.53105 1 4092 4092 0.15932 0 1 22938 4690;368 14352 14361 27141 27141 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 62.289 1 65.657 65.157 66.157 3.3681 0 0 0 0.53105 1 14664 14664 0.15932 0 1 22939 4690;368 14352 14361 27142 27142 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.285 1 66.645 66.145 67.145 3.3595 0 0 0 0.53105 1 14964 14964 0.15932 0 1 22940 4690;368 14352 14361 27143 27143 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.412 1 66.771 66.271 67.271 3.3595 0 0 0 0.53105 1 15002 15002 0.15932 0 1 22941 4690;368 14352 14361 27144 27144 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.886 1 67.242 66.742 67.742 3.3557 0 0 0 0.53105 1 15146 15146 0.15932 0 1 22942 4690;368 14352 14361 27145 27145 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 65.137 1 68.493 67.993 68.993 3.3557 0 0 0 0.53105 1 15516 15516 0.15932 0 1 22943 4690;368 14352 14361 27146 27146 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 70.031 1 73.402 72.902 73.902 3.3713 0 0 0 0.53105 1 17002 17002 0.15932 0 1 22944 4690;368 14352 14361 27147 27147 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 72.588 1 75.967 75.467 76.467 3.3799 0 0 0 0.53105 1 17771 17771 0.15932 0 1 22945 4690;368 14352 14361 27148 27148 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.3000793457031 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 74.9 1 78.293 77.793 78.793 3.3937 0 0 0 0.53105 1 18458 18458 0.15932 0 1 22946 4690;368 14352 14361 27149 27149 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.15 1 116.72 116.22 117.22 3.572 0 0 0 0.53105 1 27911 27911 0.15932 0 1 22947 4690;368 14352 14361 27150 27150 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.41 1 116.98 116.48 117.48 3.572 0 0 0 0.53105 1 27979 27979 0.15932 0 1 22948 4690;368 14352 14361 27151 27151 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 114.72 1 118.3 117.8 118.8 3.5809 0 0 0 0.53105 1 28358 28358 0.15932 0 1 22949 4690;368 14352 14361 27152 27152 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_1 2 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 118.05 1 121.65 121.15 122.15 3.6036 0 0 0 0.53105 1 29282 29282 0.15932 0 1 22950 4690;368 14352 14361 27153 27153 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29937744140625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.542 1 21.932 21.432 22.432 3.3898 0 0 0 0.53105 1 1587 1587 0.15932 0 1 22951 4690;368 14352 14361 27154 27154 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.512 1 23.919 23.419 24.419 3.4074 0 0 0 0.53105 1 2141 2141 0.15932 0 1 22952 4690;368 14352 14361 27155 27155 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.789 1 25.213 24.713 25.713 3.4241 0 0 0 0.53105 1 2487 2487 0.15932 0 1 22953 4690;368 14352 14361 27156 27156 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.975 1 25.399 24.899 25.899 3.4241 0 0 0 0.53105 1 2536 2536 0.15932 0 1 22954 4690;368 14352 14361 27157 27157 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 24.779 1 28.262 27.762 28.762 3.483 0 0 0 0.53105 1 3341 3341 0.15932 0 1 22955 4690;368 14352 14361 27158 27158 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.051 1 34.534 34.034 35.034 3.4821 0 0 0 0.53105 1 5206 5206 0.15932 0 1 22956 4690;368 14352 14361 27159 27159 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.811 1 39.222 38.722 39.722 3.4114 0 0 0 0.53105 1 6646 6646 0.15932 0 1 22957 4690;368 14352 14361 27160 27160 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 42.002 1 45.363 44.863 45.863 3.3611 0 0 0 0.53105 1 8521 8521 0.15932 0 1 22958 4690;368 14352 14361 27161 27161 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 45.541 1 48.895 48.395 49.395 3.3534 0 0 0 0.53105 1 9606 9606 0.15932 0 1 22959 4690;368 14352 14361 27162 27162 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 46.307 1 49.659 49.159 50.159 3.3515 0 0 0 0.53105 1 9838 9838 0.15932 0 1 22960 4690;368 14352 14361 27163 27163 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 46.516 1 49.867 49.367 50.367 3.3515 0 0 0 0.53105 1 9902 9902 0.15932 0 1 22961 4690;368 14352 14361 27164 27164 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 50.126 1 53.469 52.969 53.969 3.3431 0 0 0 0.53105 1 10991 10991 0.15932 0 1 22962 4690;368 14352 14361 27165 27165 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 50.606 1 53.945 53.445 54.445 3.3386 0 0 0 0.53105 1 11138 11138 0.15932 0 1 22963 4690;368 14352 14361 27166 27166 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 60.12 1 63.393 62.893 63.893 3.2731 0 0 0 0.53105 1 14045 14045 0.15932 0 1 22964 4690;368 14352 14361 27167 27167 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2995300292969 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.763 1 67.019 66.519 67.519 3.2556 0 0 0 0.53105 1 15145 15145 0.15932 0 1 22965 4690;368 14352 14361 27168 27168 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.168 1 67.424 66.924 67.924 3.2556 0 0 0 0.53105 1 15268 15268 0.15932 0 1 22966 4690;368 14352 14361 27169 27169 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 66.171 1 69.43 68.93 69.93 3.2588 0 0 0 0.53105 1 15880 15880 0.15932 0 1 22967 4690;368 14352 14361 27170 27170 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.29949951171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 66.822 1 70.085 69.585 70.585 3.2628 0 0 0 0.53105 1 16077 16077 0.15932 0 1 22968 4690;368 14352 14361 27171 27171 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 68.46 1 71.729 71.229 72.229 3.2696 0 0 0 0.53105 1 16570 16570 0.15932 0 1 22969 4690;368 14352 14361 27172 27172 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999572753906 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 69.187 1 72.463 71.963 72.963 3.2761 0 0 0 0.53105 1 16786 16786 0.15932 0 1 22970 4690;368 14352 14361 27173 27173 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 72.911 1 76.208 75.708 76.708 3.2971 0 0 0 0.53105 1 17897 17897 0.15932 0 1 22971 4690;368 14352 14361 27174 27174 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 75.472 1 78.785 78.285 79.285 3.3127 0 0 0 0.53105 1 18637 18637 0.15932 0 1 22972 4690;368 14352 14361 27175 27175 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2733154296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 78.796 1 82.152 81.652 82.652 3.3554 0 0 0 0.53105 1 19587 19587 0.15932 0 1 22973 4690;368 14352 14361 27176 27176 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 84.009 1 87.421 86.921 87.921 3.4116 0 0 0 0.53105 1 20951 20951 0.15932 0 1 22974 4690;368 14352 14361 27177 27177 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 93.97 1 97.442 96.942 97.942 3.472 0 0 0 0.53105 1 23177 23177 0.15932 0 1 22975 4690;368 14352 14361 27178 27178 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2998046875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.69 1 115.21 114.71 115.71 3.5226 0 0 0 0.53105 1 27193 27193 0.77653 0 1 22976 4690;368 14352 14361 27179 27179 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_2 3 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.03 116.53 117.53 3.5109 0 0 0 0.53105 1 27614 27614 0.15932 0 1 22977 4690;368 14352 14361 27180 27180 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.597 1 20.955 20.455 21.455 3.3581 0 0 0 0.53105 1 1315 1315 0.15932 0 1 22978 4690;368 14352 14361 27181 27181 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997741699219 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 17.842 1 21.2 20.7 21.7 3.3581 0 0 0 0.53105 1 1378 1378 0.15932 0 1 22979 4690;368 14352 14361 27182 27182 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.112 1 21.467 20.967 21.967 3.3545 0 0 0 0.53105 1 1446 1446 0.15932 0 1 22980 4690;368 14352 14361 27183 27183 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2992858886719 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.231 1 21.585 21.085 22.085 3.3545 0 0 0 0.53105 1 1479 1479 0.15932 0 1 22981 4690;368 14352 14361 27184 27184 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 31.422 1 34.721 34.221 35.221 3.2991 0 0 0 0.53105 1 5352 5352 0.15932 0 1 22982 4690;368 14352 14361 27185 27185 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 35.661 1 38.915 38.415 39.415 3.2547 0 0 0 0.53105 1 6632 6632 0.15932 0 1 22983 4690;368 14352 14361 27186 27186 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29974365234375 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 40.452 1 43.689 43.189 44.189 3.2372 0 0 0 0.53105 1 8103 8103 0.15932 0 1 22984 4690;368 14352 14361 27187 27187 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 42.319 1 45.559 45.059 46.059 3.2394 0 0 0 0.53105 1 8670 8670 0.15932 0 1 22985 4690;368 14352 14361 27188 27188 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2995910644531 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 42.465 1 45.704 45.204 46.204 3.2394 0 0 0 0.53105 1 8715 8715 0.15932 0 1 22986 4690;368 14352 14361 27189 27189 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2994689941406 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 50.997 1 54.213 53.713 54.713 3.2163 0 0 0 0.53105 1 11312 11312 0.15932 0 1 22987 4690;368 14352 14361 27190 27190 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 53.588 1 56.783 56.283 57.283 3.1948 0 0 0 0.53105 1 12101 12101 0.15932 0 1 22988 4690;368 14352 14361 27191 27191 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29986572265625 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 54.444 1 57.63 57.13 58.13 3.1856 0 0 0 0.53105 1 12363 12363 0.15932 0 1 22989 4690;368 14352 14361 27192 27192 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29998779296875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 55.367 1 58.545 58.045 59.045 3.1779 0 0 0 0.53105 1 12647 12647 0.15932 0 1 22990 4690;368 14352 14361 27193 27193 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 55.843 1 59.021 58.521 59.521 3.1779 0 0 0 0.53105 1 12793 12793 0.15932 0 1 22991 4690;368 14352 14361 27194 27194 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 56.579 1 59.752 59.252 60.252 3.1721 0 0 0 0.53105 1 13016 13016 0.15932 0 1 22992 4690;368 14352 14361 27195 27195 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.29962158203125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 58.279 1 61.445 60.945 61.945 3.1658 0 0 0 0.53105 1 13530 13530 0.15932 0 1 22993 4690;368 14352 14361 27196 27196 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.167 1 66.337 65.837 66.837 3.1698 0 0 0 0.53105 1 15027 15027 0.15932 0 1 22994 4690;368 14352 14361 27197 27197 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.856 1 67.031 66.531 67.531 3.1741 0 0 0 0.53105 1 15232 15232 0.15932 0 1 22995 4690;368 14352 14361 27198 27198 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 63.942 1 67.116 66.616 67.616 3.1741 0 0 0 0.53105 1 15258 15258 0.15932 0 1 22996 4690;368 14352 14361 27199 27199 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.300048828125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 64.845 1 68.024 67.524 68.524 3.1795 0 0 0 0.53105 1 15535 15535 0.15932 0 1 22997 4690;368 14352 14361 27200 27200 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3001403808594 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 65.046 1 68.226 67.726 68.726 3.1795 0 0 0 0.53105 1 15596 15596 0.15932 0 1 22998 4690;368 14352 14361 27201 27201 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 70.468 1 73.679 73.179 74.179 3.2113 0 0 0 0.53105 1 17239 17239 0.15932 0 1 22999 4690;368 14352 14361 27202 27202 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.3000183105469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 72.741 1 75.968 75.468 76.468 3.2271 0 0 0 0.53105 1 17924 17924 0.15932 0 1 23000 4690;368 14352 14361 27203 27203 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN47_class_I_Rep_3 4 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 115.25 1 118.73 118.23 119.23 3.4802 0 0 0 0.53105 1 28330 28330 0.15932 0 1 23001 4690;368 14352 14361 27204 27204 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.299560546875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 18.311 1 21.962 21.462 22.462 3.6509 0 0 0 0.53105 1 1207 1207 0.15932 0 1 23002 4690;368 14352 14361 27205 27205 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_2 6 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 111.48 1 115.14 114.64 115.64 3.6666 0 0 0 0.53105 1 26517 26517 0.15932 0 1 23003 4690;368 14352 14361 27206 27206 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996520996094 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 20.329 1 23.996 23.496 24.496 3.6667 0 0 0 0.53105 1 1707 1707 0.15932 0 1 23004 4690;368 14352 14361 27207 27207 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2999267578125 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 21.13 1 24.797 24.297 25.297 3.6667 0 0 0 0.53105 1 1932 1932 0.15932 0 1 23005 4690;368 14352 14361 27208 27208 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2998352050781 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.13 1 115.79 115.29 116.29 3.6614 0 0 0 0.53105 1 26632 26632 0.15932 0 1 23006 4690;368 14352 14361 27209 27209 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2997131347656 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.51 1 116.17 115.67 116.67 3.6614 0 0 0 0.53105 1 26734 26734 0.15932 0 1 23007 4690;368 14352 14361 27210 27210 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2994079589844 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 112.67 1 116.33 115.83 116.83 3.6614 0 0 0 0.53105 1 26773 26773 0.15932 0 1 23008 4690;368 14352 14361 27211 27211 0.2778736654952354 LKKKKKKKKG 10 Unmodified _LKKKKKKKKG_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|8|2|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|6|2|sense ENSG00000174780|ENST00000642900|SRP72 MSMS UPN48_class_I_Rep_3 7 405.2996826171875 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 113.08 1 116.74 116.24 117.24 3.6568 0 0 0 0.53105 1 26883 26883 0.15932 0 1 23009 4690;368 14352 14361 27212 27212 0.2778736654952354 LKKKKKRT 8 Unmodified _LKKKKKRT_ 0 0 0 L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|5|1|sense L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|5|1|sense L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 515.3662109375 2 515.366393 1028.71823 NaN NaN NaN NaN NaN NaN NaN 107.98 1 111.51 111.01 112.01 3.5382 0 0 0 0.40746 1 26385 26385 0.69038 0 1 23010 11938 14353 14362 27213 27213 0.20502287010162945 LKKKKTTTIR 10 Unmodified _LKKKKTTTIR_ 0 0 0 L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|47|3|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|47|3|sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|47|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 608.40576171875 2 608.908622 1215.80269 0.4189 0.00025507 -1.8689 -0.001138 -1.45 -0.00088294 608.9075421458175 108.48 0.18231 112.11 111.95 112.13 3.6313 21 14 3 0 0 0 0.84575 1 26222 26222 1.3295 0 1 2462400 23011 10152 14354 14363 27214 27214 0.20342193036231038 LKKKKYFHFRV 11 Unmodified _LKKKKYFHFRV_ 0 0 0 REV__AluJr_dup7908|chr2:32328317-32328597:-|1.1374294696155232|0.0098435146321882|6.85|151.0|12|3|sense REV__AluJr_dup7908|chr2:32328317-32328597:-|1.1374294696155232|0.0098435146321882|6.85|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 498.6415100097656 3 498.641634 1492.90307 0.406 0.00020245 0.029187 1.4554E-05 0.43519 0.000217 498.64153689547544 55.357 1.7274 58.913 58.152 59.88 3.5559 159 113 3 0 0 0 0.68478 1 11739 11739 0.094841 0 1 260670 + 23012 17063 14355 14364 27215 27215 0.1763385008989644 LKKKKYFHFRV 11 Unmodified _LKKKKYFHFRV_ 0 0 0 REV__AluJr_dup7908|chr2:32328317-32328597:-|1.1374294696155232|0.0098435146321882|6.85|151.0|12|3|sense REV__AluJr_dup7908|chr2:32328317-32328597:-|1.1374294696155232|0.0098435146321882|6.85|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 498.64190673828125 3 498.641634 1492.90307 NaN NaN NaN NaN NaN NaN NaN 55.973 1 59.528 59.028 60.028 3.5554 0 0 0 0.38417 1 11917 11917 0.094841 0 1 + 23013 17063 14355 14364 27216 27216 0.1763385008989644 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_1 2 485.784423828125 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 34.678 1 38.364 37.864 38.864 3.6859 0 0 0 0.40738 1 6271 6271 0.79363 0 1 23014 12626 14356 14365 27217 27217 0.12634951164693575 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_1 2 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 102.06 1 105.85 105.35 106.35 3.7888 0 0 0 0.40738 1 25139 25139 0.79363 0 1 23015 12626 14356 14365 27218 27218 0.12634951164693575 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_2 3 485.81170654296875 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 42.234 1 45.596 45.096 46.096 3.3611 0 0 0 0.40738 1 8592 8592 0.79363 0 1 23016 12626 14356 14365 27219 27219 0.12634951164693575 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 485.81097412109375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 39.679 1 42.917 42.417 43.417 3.238 0 0 0 0.40738 1 7866 7866 0.79363 0 1 23017 12626 14356 14365 27220 27220 0.12634951164693575 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 485.81048583984375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 39.849 1 43.086 42.586 43.586 3.2372 0 0 0 0.40738 1 7919 7919 0.79363 0 1 23018 12626 14356 14365 27221 27221 0.12634951164693575 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 485.8108215332031 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 51.237 1 54.454 53.954 54.954 3.2163 0 0 0 0.40738 1 11386 11386 0.79363 0 1 23019 12626 14356 14365 27222 27222 0.12634951164693575 LKKKLHGF 8 Unmodified _LKKKLHGF_ 0 0 0 L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense L1ME3A_dup11563|chr13:32189661-32191551:+|1.6206167266213825|0.1637165072104471|3.31|151.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 88.913 1 92.306 91.806 92.806 3.3931 0 0 0 0.40738 1 22299 22299 0.79363 0 1 23020 12626 14356 14365 27223 27223 0.12634951164693575 LKKKLYIKLK 10 Unmodified _LKKKLYIKLK_ 0 0 0 REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|14|2|sense REV__L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 637.9476318359375 2 637.949759 1273.88496 NaN NaN NaN NaN NaN NaN NaN 56.641 1 56.641 56.141 57.141 0 0 0 0 0.53105 1 12365 12365 0 0 1 + 23021 28525 14357 14366 27224 27224 0.2589771511518393 LKKKMVHF 8 Unmodified _LKKKMVHF_ 0 0 0 L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|158|3|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|158|3|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|158|3|anti-sense MSMS UPN47_class_I_Rep_3 4 515.8147583007812 2 515.815147 1029.61574 NaN NaN NaN NaN NaN NaN NaN 84.314 1 87.676 87.176 88.176 3.3615 0 0 0 0.40746 1 21160 21160 0.69038 0 1 23022 12208 14358 14367 27225 27225 0.1021187794706293 LKKKWCWK 8 Unmodified _LKKKWCWK_ 0 0 0 REV__L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|63|3|sense REV__L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|63|3|sense MSMS UPN47_class_I_Rep_1 2 560.2793579101562 2 560.328422 1118.64229 NaN NaN NaN NaN NaN NaN NaN 46.95 1 50.645 50.145 51.145 3.6951 0 0 0 0.40746 1 10007 10007 0.69038 0 1 + 23023 25995 14359 14368 27226 27226 0.08771566838368017 LKKLHDPD 8 Unmodified _LKKLHDPD_ 0 0 0 REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 483.2744445800781 2 483.274367 964.53418 -0.18728 -9.0509E-05 -0.12522 -6.0516E-05 -0.3125 -0.00015102 483.2740809448174 24.481 0.47693 27.947 27.734 28.211 3.4655 60 42 2 0 0 0 0.82752 1 3301 3301 2.0598 0.21551 1 39108 + 23024 19848 14360 14369 27227 27227 0.05049473788801606 LKKLSLTK 8 Unmodified _LKKLSLTK_ 0 0 0 REV__AluJb_dup114476|chr19:8533060-8533328:-|1.3391139032508217|0.0913884198756593|3.87|151.0|7|3|sense REV__AluJb_dup114476|chr19:8533060-8533328:-|1.3391139032508217|0.0913884198756593|3.87|151.0|7|3|sense MSMS UPN46_class_I_Rep_3 1 465.7657470703125 2 465.820953 929.627353 NaN NaN NaN NaN NaN NaN NaN 59.104 1 59.104 58.604 59.604 0 0 0 0 0.40753 1 13045 13045 0.6015 0 1 + 23025 16918 14361 14370 27228 27228 0.15972398242013242 LKKPAPGFNDF 11 Unmodified _LKKPAPGFNDF_ 0 0 0 L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|73|1|anti-sense L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|73|1|anti-sense L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|73|1|anti-sense MSMS UPN47_class_I_Rep_2 3 617.33642578125 2 617.334956 1232.65536 NaN NaN NaN NaN NaN NaN NaN 58.612 1 61.894 61.394 62.394 3.2818 0 0 0 0.38417 1 13581 13581 0.26902 0.26902 1 23026 14688 14362 14371 27229 27229 0.04833676431439926 LKKPMLQL 8 Unmodified _LKKPMLQL_ 0 0 0 REV__L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|25|1|sense REV__L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|25|1|sense MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 76.718 1 80.049 79.549 80.549 3.3315 0 0 0 0.4044 1 18999 18999 4.756 0 1 + 23027 24928 14363 14372 27230 27230 0.11849055852906076 LKKPPTKKG 9 Unmodified _LKKPPTKKG_ 0 0 0 REV__L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|167|3|sense REV__L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|167|3|sense MSMS UPN47_class_I_Rep_1 2 498.83197021484375 2 498.831852 995.649151 NaN NaN NaN NaN NaN NaN NaN 40.848 1 44.519 44.019 45.019 3.6719 0 0 0 0.3967 1 8143 8143 1.4819 0.79152 1 + 23028 25081 14364 14373 27231 27231 0.15115202990602938 LKKPVRRRY 9 Unmodified _LKKPVRRRY_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MSMS UPN47_class_I_Rep_3 4 405.9324035644531 3 405.931408 1214.77239 NaN NaN NaN NaN NaN NaN NaN 34.099 1 37.373 36.873 37.873 3.2748 0 0 0 0.39841 1 6160 6160 1.0715 0.29493 1 23029 1125 14365 14374 27232 27232 0.17359879161745084 LKKQQQKI 8 Unmodified _LKKQQQKI_ 0 0 0 AluJr_dup76515|chr19:7435828-7436061:-|1.3022917667497145|0.0077446231422461|7.39|151.0|1|1|sense AluJr_dup76515|chr19:7435828-7436061:-|1.3022917667497145|0.0077446231422461|7.39|151.0|1|1|sense AluJr_dup76515|chr19:7435828-7436061:-|1.3022917667497145|0.0077446231422461|7.39|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 507.3265075683594 2 507.326934 1012.63931 0.19124 9.7023E-05 -0.41575 -0.00021092 -0.22451 -0.0001139 507.3266888535278 44.033 0.86243 47.672 47.199 48.062 3.6385 97 55 2 0 0 0 0.82752 1 8178 8178 12.532 0 1 156030 23030 182 14366 14375 27233 27233 0.1335001498522388 LKKSKIKATK 10 Unmodified _LKKSKIKATK_ 0 0 0 L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 572.892333984375 2 572.892441 1143.77033 NaN NaN NaN NaN NaN NaN NaN 41.485 1 41.485 40.985 41.985 0 0 0 0 0.53105 1 8138 8138 0 0 1 23031 11558 14367 14376 27234 27234 0.20419405633242604 LKKSKIKATK 10 Unmodified _LKKSKIKATK_ 0 0 0 L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.8927001953125 2 572.892441 1143.77033 0.40095 0.0002297 -0.079615 -4.5611E-05 0.32134 0.00018409 572.8923274792631 108.1 0.47231 111.73 111.46 111.93 3.6313 108 39 4 0 0 0 0.56543 2 26084 26084;26129 0 0 1 8484600 23032 11558 14367 14376 27235;27236 27235 0.20419405633242604 LKKSKIKATK 10 Unmodified _LKKSKIKATK_ 0 0 0 L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.892578125 2 572.892441 1143.77033 0.40077 0.0002296 -0.15725 -9.0088E-05 0.24352 0.00013951 572.8923220315856 108.22 0.13774 111.85 111.79 111.93 3.6313 14 9 2 0 0 0 0.56543 1 26179 26179 0 0 1 6880900 23033 11558 14367 14376 27237 27237 0.20419405633242604 LKKVGKEY 8 Unmodified _LKKVGKEY_ 0 0 0 REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|71|2|sense REV__L1MA3_dup810|chr2:57922605-57926439:-|1.5849582243470606|0.0130872612010504|6.92|151.0|71|2|sense MSMS UPN46_class_I_Rep_3 1 482.79571533203125 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 43.172 1 43.172 42.672 43.672 0 0 0 0 0.40364 1 8597 8597 5.7604 0 1 + 23034 25121 14368 14377 27238 27238 0.09207234828272703 LKKVLKKIVK 10 Unmodified _LKKVLKKIVK_ 0 0 0 ENST00000478941.1_1_2:203147084-203155055:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENSG00000055044|ENST00000264279|NOP58 ENST00000478941.1_1_2:203147084-203155055:+|nuORF ENST00000478941.1_1_2:203147084-203155055:+|nuORF MSMS UPN48_class_I_Rep_2 6 598.94384765625 2 598.944476 1195.8744 NaN NaN NaN NaN NaN NaN NaN 34.487 1 38.16 37.66 38.66 3.6735 0 0 0 0.53105 1 5565 5565 0 0 1 23035 938 14369 14378 27239 27239 0.2842973246076781 LKKVRPKP 8 Unmodified _LKKVRPKP_ 0 0 0 REV__nc|ENSG00000186260|Q9ULH7-2|MRTFB REV__nc|ENSG00000186260|Q9ULH7-2|MRTFB MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7958679199219 2 483.334562 964.65457 0.27546 0.00013314 -0.74795 -0.00036151 -0.47249 -0.00022837 483.3341117432818 109.25 0.40334 109.25 109 109.4 0 36 28 2 0 0 0 0.72333 1 26828 26828 0.6015 0 1 3127600 + 23036 20886 14370 14379 27240 27240 0.1708292657307311 LKKVRVLV 8 Unmodified _LKKVRVLV_ 0 0 0 Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|68|3|anti-sense Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|68|3|anti-sense Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_1 5 477.68017578125 2 477.844762 953.674971 NaN NaN NaN NaN NaN NaN NaN 32.851 1 36.377 35.877 36.877 3.5266 0 0 0 0.40746 1 5047 5047 0.69038 0 1 23037 33095 14371 14380 27241 27241 0.1962809723288501 LKKWLLSLTK 10 Unmodified _LKKWLLSLTK_ 0 0 0 REV__Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|7|1|sense REV__Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 615.404296875 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 45.927 1 45.927 45.427 46.427 0 0 0 0 0.53105 1 9377 9377 0.35063 0 1 + 23038 32668 14372 14381 27242 27242 0.18548576293073893 LKKWLLSLTK 10 Unmodified _LKKWLLSLTK_ 0 0 0 REV__Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|7|1|sense REV__Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 615.4033813476562 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 69.922 1 73.435 72.935 73.935 3.5128 0 0 0 0.53105 1 16143 16143 1.1933 0 1 + 23039 32668 14372 14381 27243 27243 0.18548576293073893 LKKYAAHI 8 Unmodified _LKKYAAHI_ 0 0 0 REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|41|3|sense REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|41|3|sense MSMS UPN48_class_I_Rep_3 7 472.2881164550781 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 87.756 1 91.566 91.066 92.066 3.8104 0 0 0 0.40738 1 20824 20824 0.79363 0 1 + 23040 24265 14373 14382 27244 27244 0.09150671893678464 LKKYKQGY 8 Unmodified _LKKYKQGY_ 0 0 0 REV__LTR49-int_dup1297|chr10:911251-912191:+|5.285430885943925|0.4364351631598755|3.6|151.0|19|3|sense REV__LTR49-int_dup1297|chr10:911251-912191:+|5.285430885943925|0.4364351631598755|3.6|151.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 514.358642578125 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 35.061 1 35.061 34.561 35.561 0 0 0 0 0.40604 1 6338 6338 2.5775 0 1 + 23041 30942 14374 14383 27245 27245 0.07398637202550162 LKLDPIALMR 10 Unmodified _LKLDPIALMR_ 0 0 0 ENST00000313871.8_1_X:1720532-1720865:+|nuORF ENST00000313871.8_1_X:1720532-1720865:+|nuORF ENST00000313871.8_1_X:1720532-1720865:+|nuORF MSMS UPN47_class_I_Rep_1 2 585.8134765625 2 585.357376 1168.7002 NaN NaN NaN NaN NaN NaN NaN 75.237 1 78.64 78.14 79.14 3.4034 0 0 0 0.53105 1 18561 18561 1.4819 0 1 23042 6121 14375 14384 27246 27246 0.12259783973127014 LKLDPLPY 8 Unmodified _LKLDPLPY_ 0 0 0 L1PA15_dup743|chr2:68213747-68215298:+|4.776334815082297|0.0427213418850039|6.8|151.0|4|1|sense L1PA15_dup743|chr2:68213747-68215298:+|4.776334815082297|0.0427213418850039|6.8|151.0|4|1|sense L1PA15_dup743|chr2:68213747-68215298:+|4.776334815082297|0.0427213418850039|6.8|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 479.7814636230469 2 479.784036 957.553519 NaN NaN NaN NaN NaN NaN NaN 25.819 1 29.581 29.081 30.081 3.7624 0 0 0 0.40738 1 3603 3603 0.79363 0 1 23043 13982 14376 14385 27247 27247 0.07304430079693702 LKLELPFDRV 10 Unmodified _LKLELPFDRV_ 0 0 0 ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2 ENSG00000073150|ENST00000395842|PANX2 ENSG00000073150|ENST00000395842|PANX2 MSMS UPN46_class_I_Rep_3 1 615.367919921875 2 615.366256 1228.71796 NaN NaN NaN NaN NaN NaN NaN 87.634 1 87.634 87.134 88.134 0 0 0 0 0.53105 1 21009 21009 1.4819 0 1 23044 1112 14377 14386 27248 27248 0.11274822499649417 LKLGGIYH 8 Unmodified _LKLGGIYH_ 0 0 0 REV__MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|12|2|sense REV__MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 450.7699279785156 2 450.76872 899.522887 NaN NaN NaN NaN NaN NaN NaN 43.723 1 46.965 46.465 47.465 3.2419 0 0 0 0.40581 1 9100 9100 2.8892 0 1 + 23045 31519 14378 14387 27249 27249 0.06910696485317658 LKLHLFSKFL 10 Unmodified _LKLHLFSKFL_ 0 0 0 REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_2 3 623.7235717773438 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.72 1 107.25 106.75 107.75 3.5289 0 0 0 0.53105 1 25208 25208 1.4819 0 1 + 23046 26445 14379 14388 27250 27250 0.15192307121606063 LKLHLFSKFL 10 Unmodified _LKLHLFSKFL_ 0 0 0 REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_2 3 623.3916625976562 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.74 1 107.26 106.76 107.76 3.5289 0 0 0 0.53105 1 25211 25211 1.4819 0 1 + 23047 26445 14379 14388 27251 27251 0.15192307121606063 LKLHLFSKFL 10 Unmodified _LKLHLFSKFL_ 0 0 0 REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_2 3 623.3897094726562 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 104.82 1 108.36 107.86 108.86 3.5327 0 0 0 0.53105 1 25448 25448 1.4819 0 1 + 23048 26445 14379 14388 27252 27252 0.15192307121606063 LKLHLFSKFL 10 Unmodified _LKLHLFSKFL_ 0 0 0 REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense REV__L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_2 6 623.3897705078125 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.48 1 107.19 106.69 107.69 3.7108 0 0 0 0.53105 1 24495 24495 1.4819 0 1 + 23049 26445 14379 14388 27253 27253 0.15192307121606063 LKLICLRIL 9 Unmodified _LKLICLRIL_ 0 0 0 REV__MSTD_dup776|chr2:65114875-65115201:+|1.2805466787924276|0.0222642373669684|5.85|151.0|24|3|anti-sense REV__MSTD_dup776|chr2:65114875-65115201:+|1.2805466787924276|0.0222642373669684|5.85|151.0|24|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 542.3663940429688 2 542.86738 1083.72021 0.40146 0.00021794 0.74054 0.00040202 1.142 0.00061996 542.8677303053066 108.25 0.33009 111.88 111.8 112.13 3.6313 38 25 2 0 0 0 0.12462 1 26191 26191 0.45834 0.45834 1 3651000 + 23050 31921 14380 14389 27254 27254 0.18169579703771888 LKLIFNNER 9 Unmodified _LKLIFNNER_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|17|2|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.3366088867188 2 573.835123 1145.65569 0.39634 0.00022743 -0.0586 -3.3627E-05 0.33774 0.00019381 573.8350169371632 48.925 1.0466 52.449 52.096 53.142 3.5239 200 74 4 0 0 0 0.43153 1 9758 9758 6.2058 0 1 1359000 + 23051 28516 14381 14390 27255 27255 0.08869096151306621 LKLIFNNER 9 Unmodified _LKLIFNNER_ 0 0 0 REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|17|2|sense REV__L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.8356323242188 2 573.835123 1145.65569 0.37895 0.00021746 -0.045494 -2.6106E-05 0.33346 0.00019135 573.8350285050418 48.924 1.0866 52.554 52.141 53.227 3.6291 205 81 3 0 0 0 0.47493 1 9948 9948 3.2813 0 1 1058900 + 23052 28516 14381 14390 27256 27256 0.08869096151306621 LKLIKLLKH 9 Unmodified _LKLIKLLKH_ 0 0 0 REV__Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|269|2|anti-sense REV__Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|269|2|anti-sense MSMS UPN48_class_I_Rep_2 6 552.9805908203125 2 553.394619 1104.77469 NaN NaN NaN NaN NaN NaN NaN 110.74 1 114.41 113.91 114.91 3.669 0 0 0 0.4029 1 26345 26345 0 0 1 + 23053 23525 14382 14391 27257 27257 0.2264891484680902 LKLIPVPLLLG 11 Unmodified _LKLIPVPLLLG_ 0 0 0 REV__MER21B_dup2373|chr17:47167619-47168433:-|2.0402413710468648|0.0349229259644471|5.87|151.0|53|2|anti-sense REV__MER21B_dup2373|chr17:47167619-47168433:-|2.0402413710468648|0.0349229259644471|5.87|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_2 6 588.4099731445312 2 588.409935 1174.80532 NaN NaN NaN NaN NaN NaN NaN 68.102 1 71.61 71.11 72.11 3.5083 0 0 0 0.38417 1 15685 15685 0.30703 0.30703 1 + 23054 31205 14383 14392 27258 27258 0.2249064844120312 LKLKKHKG 8 Unmodified _LKLKKHKG_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|83|3|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|83|3|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|83|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3272399902344 2 476.326737 950.63892 0.25658 0.00012221 0.044912 2.1393E-05 0.30149 0.00014361 476.3266760561852 108.97 0.52383 108.97 108.88 109.4 0 65 34 2 0 0 0 0.82752 1 26815 26815 2.3027 0 1 5578600 23055 9457 14384 14393 27259 27259 0.161626400560408 LKLKKHKG 8 Unmodified _LKLKKHKG_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|83|3|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|83|3|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|83|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3273010253906 2 476.326737 950.63892 0.25658 0.00012221 0.0084929 4.0454E-06 0.26507 0.00012626 476.32667230239247 109.47 0.23222 109.47 109.38 109.62 0 37 18 3 0 0 0 0.82752 1 26871 26871 0.69038 0 1 2877700 23056 9457 14384 14393 27260 27260 0.161626400560408 LKLKQELI 8 Unmodified _LKLKQELI_ 0 0 0 REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF MSMS UPN47_class_I_Rep_1 2 492.8262634277344 2 492.826235 983.637917 NaN NaN NaN NaN NaN NaN NaN 59.225 1 62.643 62.143 63.143 3.4171 0 0 0 0.40501 1 13736 13736 3.9444 0 1 + 23057 17622 14385 14394 27261 27261 0.14544380896461462 LKLLKLRKKK 10 Unmodified _LKLLKLRKKK_ 0 0 0 L1ME2_dup12104|chr20:8554045-8554780:+|1.5440835863914768|0.0671957648473338|4.52|151.0|14|3|sense L1ME2_dup12104|chr20:8554045-8554780:+|1.5440835863914768|0.0671957648473338|4.52|151.0|14|3|sense L1ME2_dup12104|chr20:8554045-8554780:+|1.5440835863914768|0.0671957648473338|4.52|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 634.4678955078125 2 634.46865 1266.92275 NaN NaN NaN NaN NaN NaN NaN 48.231 1 48.231 47.731 48.731 0 0 0 0 0.53105 1 10031 10031 0 0 1 23058 12466 14386 14395 27262 27262 0.2999622610066126 LKLLTLSDP 9 Unmodified _LKLLTLSDP_ 0 0 0 AluSx1_dup71712|chr11:85954718-85954990:+|1.0337179480448462|0.0956318457266937|3.43|151.0|18|2|anti-sense;AluJr_dup20205|chr4:139035130-139035435:-|1.006514844148929|0.0427300660058764|4.56|151.0|18|2|anti-sense;AluSz_dup64952|chr11:117066058-117066367:-|1.7272159218532148|0.0357729163938345|5.59|151.0|24|3|anti-sense AluSx1_dup71712|chr11:85954718-85954990:+|1.0337179480448462|0.0956318457266937|3.43|151.0|18|2|anti-sense AluSx1_dup71712|chr11:85954718-85954990:+|1.0337179480448462|0.0956318457266937|3.43|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.3077087402344 2 500.307875 998.601197 NaN NaN NaN NaN NaN NaN NaN 58.928 1 62.345 61.845 62.845 3.4171 0 0 0 0.38639 1 13644 13644 3.9444 0 1 23059 136 14387 14396 27263 27263 0.10184084279887884 LKLLTQPYL 9 Unmodified _LKLLTQPYL_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|189|1|anti-sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|189|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.8397827148438 2 544.839342 1087.66413 0.39476 0.00021508 0.021272 1.159E-05 0.41604 0.00022667 544.8392885717901 68.806 0.3831 72.171 71.874 72.257 3.3646 45 30 2 0 0 0 0.38714 1 16639 16639 8.7454 0 1 82799 + 23060 30027 14388 14397 27264 27264 0.12380650067939314 LKLLTQPYL 9 Unmodified _LKLLTQPYL_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|189|1|anti-sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|189|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.8397827148438 2 544.839342 1087.66413 0.36971 0.00020144 0.16266 8.8622E-05 0.53237 0.00029006 545.3411544139478 69.318 0.18961 72.594 72.445 72.635 3.2761 17 13 2 0 0 0 0.33908 2 16798 16798;16823 11.495 0 1 71364 + 23061 30027 14388 14397 27265;27266 27265 0.12380650067939314 LKLLTQPYL 9 Unmodified _LKLLTQPYL_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|189|1|anti-sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|189|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 544.839342 1087.66413 0.36971 0.00020144 0.16266 8.8622E-05 0.53237 0.00029006 545.3411544139478 69.318 0.18961 72.594 72.445 72.635 3.2761 -0.11022 0.00049596 NaN 11.495 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 71364 + 23062 30027 14388 14397 0.12380650067939314 LKLLWLRDI 9 Unmodified _LKLLWLRDI_ 0 0 0 REV__Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|15|2|sense REV__Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 585.6656494140625 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 57.46 1 57.46 56.96 57.96 0 0 0 0 0.39598 1 12592 12592 1.6526 0 1 + 23063 17265 14389 14398 27267 27267 0.15559734087514698 LKLLYWPTHN 10 Unmodified _LKLLYWPTHN_ 0 0 0 REV__L1MC1_dup10605|chr14:31015979-31016460:+|1.0448499346720015|0.0113345566873911|6.53|151.0|16|3|sense REV__L1MC1_dup10605|chr14:31015979-31016460:+|1.0448499346720015|0.0113345566873911|6.53|151.0|16|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 642.3624877929688 2 642.858598 1283.70264 0.50059 0.00032181 2.0265 0.0013027 2.5271 0.0016245 643.3618192328759 104.21 0.26193 107.91 107.77 108.03 3.6991 146 37 6 0 0 0 0.84575 1 24637 24637 5.7319 2.1354 1 135750000 + 23064 26489 14390 14399 27268 27268 0.07213955702468411 LKLPWPWLPP 10 Unmodified _LKLPWPWLPP_ 0 0 0 REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF MSMS UPN48_class_I_Rep_3 7 623.8697509765625 2 623.870977 1245.7274 NaN NaN NaN NaN NaN NaN NaN 96.652 1 100.56 100.06 101.06 3.9084 0 0 0 0.53105 1 22909 22909 1.6526 1.1279 1 + 23065 22099 14391 14400 27269 27269 0.1143663557581931 LKLQLRFRR 9 Unmodified _LKLQLRFRR_ 0 0 0 REV__ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|114|3|sense REV__ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|114|3|sense MSMS UPN46_class_I_Rep_3 1 615.404052734375 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 43.443 1 43.443 42.943 43.943 0 0 0 0 0.4007 1 8675 8675 0.52476 0.066424 1 + 23066 23256 14392 14401 27270 27270 0.18280165678766025 LKLRLILIALA 11 Unmodified _LKLRLILIALA_ 0 0 0 REV__nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2 REV__nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2 MSMS UPN48_class_I_Rep_2 6 618.94384765625 2 618.941934 1235.86931 NaN NaN NaN NaN NaN NaN NaN 45.237 1 48.995 48.495 49.495 3.7579 0 0 0 0.38417 1 8710 8710 0 0 1 + 23067 32134 14393 14402 27271 27271 0.26081428598217826 LKLSIAEEL 9 Unmodified _LKLSIAEEL_ 0 0 0 REV__L1PA15-16_dup87|chr2:127262749-127263702:-|1.710807682999692|0.463654476236346|1.88|151.0|8|1|sense REV__L1PA15-16_dup87|chr2:127262749-127263702:-|1.710807682999692|0.463654476236346|1.88|151.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 507.7941589355469 2 508.305332 1014.59611 0.21302 0.00010828 -0.14756 -7.5003E-05 0.065466 3.3277E-05 508.3051840793761 62.208 0.46632 65.375 64.997 65.463 3.1667 42 34 2 0 0 0 0.12383 1 14658 14658 3.2813 0 1 95622 + 23068 29309 14394 14403 27272 27272 0.08939780417267684 LKLSIAEEL 9 Unmodified _LKLSIAEEL_ 0 0 0 REV__L1PA15-16_dup87|chr2:127262749-127263702:-|1.710807682999692|0.463654476236346|1.88|151.0|8|1|sense REV__L1PA15-16_dup87|chr2:127262749-127263702:-|1.710807682999692|0.463654476236346|1.88|151.0|8|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 508.305332 1014.59611 0.15904 8.0841E-05 -0.15396 -7.8259E-05 0.0050808 2.5826E-06 508.305130072774 61.941 0.45558 65.2 64.966 65.422 3.2594 0.00063104 6.0774E-05 NaN 3.2813 41 30 2 NaN NaN NaN NaN 0 NaN NaN 0 93941 + 23069 29309 14394 14403 0.08939780417267684 LKLTGPINQ 9 Unmodified _LKLTGPINQ_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|7|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|7|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 492.31036376953125 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.36 1 60.797 60.297 61.297 3.437 0 0 0 0.36505 1 13168 13168 7.2892 0.56607 1 23070 15259 14395 14404 27273 27273 0.08914333339942004 LKLYQVLFQTT 11 Unmodified _LKLYQVLFQTT_ 0 0 0 L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense MSMS UPN48_class_I_Rep_1 5 451.9319763183594 3 451.930739 1352.77039 NaN NaN NaN NaN NaN NaN NaN 89.984 1 93.609 93.109 94.109 3.6255 0 0 0 0.38417 1 21625 21625 1.2148 0 1 23071 15169 14396 14405 27274 27274 0.10811360842581053 LKLYQVLFQTT 11 Unmodified _LKLYQVLFQTT_ 0 0 0 L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense MSMS UPN48_class_I_Rep_2 6 451.93255615234375 3 451.930739 1352.77039 NaN NaN NaN NaN NaN NaN NaN 92.793 1 96.563 96.063 97.063 3.77 0 0 0 0.38417 1 22076 22076 0.50596 0.051438 1 23072 15169 14396 14405 27275 27275 0.10811360842581053 LKLYQVLFQTT 11 Unmodified _LKLYQVLFQTT_ 0 0 0 L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|44|3|sense MSMS UPN48_class_I_Rep_3 7 451.9324951171875 3 451.930739 1352.77039 NaN NaN NaN NaN NaN NaN NaN 92.35 1 96.228 95.728 96.728 3.8782 0 0 0 0.38417 1 21896 21896 0.50596 0.09769 1 23073 15169 14396 14405 27276 27276 0.10811360842581053 LKNGNIKI 8 Unmodified _LKNGNIKI_ 0 0 0 L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.286865234375 2 450.287277 898.560001 -0.35477 -0.00015975 -0.59436 -0.00026763 -0.94914 -0.00042738 450.2869288421527 38.26 0.51971 41.925 41.721 42.241 3.6652 68 39 2 0 0 0 0.82752 2 7355 7355;7395 11.64 0 1 112900 23074 12989 14397 14406 27277;27278 27277 0.10666368031081674 LKNGNIKI 8 Unmodified _LKNGNIKI_ 0 0 0 L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 450.2867126464844 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 38.717 1 42.095 41.595 42.595 3.3785 0 0 0 0.37681 1 7526 7526 15.847 4.2069 1 23075 12989 14397 14406 27279 27279 0.10666368031081674 LKNGNIKI 8 Unmodified _LKNGNIKI_ 0 0 0 L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense L1MEb_dup82|chr1:155391247-155391672:-|1.1087842912462524|0.0197400738808906|5.81|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 450.2867126464844 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 38.957 1 42.195 41.695 42.695 3.238 0 0 0 0.3903 1 7643 7643 11.64 2.2572 1 23076 12989 14397 14406 27280 27280 0.10666368031081674 LKNGPQRIS 9 Unmodified _LKNGPQRIS_ 0 0 0 MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|11|3|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|11|3|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 506.799072265625 2 506.79854 1011.58253 NaN NaN NaN NaN NaN NaN NaN 65.384 1 68.564 68.064 69.064 3.1795 0 0 0 0.38916 1 15699 15699 3.2813 0.97858 1 23077 16351 14398 14407 27281 27281 0.0771996742871579 LKNHAILM 8 Unmodified _LKNHAILM_ 0 0 0 L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|94|1|anti-sense L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|94|1|anti-sense L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|94|1|anti-sense MSMS UPN48_class_I_Rep_2 6 470.27484130859375 2 470.275855 938.537157 NaN NaN NaN NaN NaN NaN NaN 54.083 1 57.665 57.165 58.165 3.5817 0 0 0 0.40404 1 11397 11397 5.2307 2.3415 1 23078 8867 14399 14408 27282 27282 0.06543025641974509 LKNKADYVE 9 Unmodified _LKNKADYVE_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MSMS UPN48_class_I_Rep_3 7 540.2808227539062 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 50.595 1 54.216 53.716 54.716 3.621 0 0 0 0.38784 1 10281 10281 3.5965 0.31518 1 23079 1255 14400 14409 27283 27283 0.02973421752062677 LKNKINNK 8 Unmodified _LKNKINNK_ 0 0 0 REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|50|2|sense REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|50|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.3027038574219 2 486.303458 970.592364 -0.23738 -0.00011544 -0.016919 -8.2277E-06 -0.2543 -0.00012367 486.3034343220658 41.733 1.4216 44.97 44.585 46.006 3.2372 260 112 3 0 0 0 0.82752 1 8736 8736 2.3027 0 1 736630 + 23080 27433 14401 14410 27284 27284 0.10589155434070108 LKNKKERERER 11 Unmodified _LKNKKERERER_ 0 0 0 AluJb_dup674|chr1:9694689-9694991:+|1.2462350042219568|0.0081834574956271|7.25|151.0|4|1|sense AluJb_dup674|chr1:9694689-9694991:+|1.2462350042219568|0.0081834574956271|7.25|151.0|4|1|sense AluJb_dup674|chr1:9694689-9694991:+|1.2462350042219568|0.0081834574956271|7.25|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.9588623046875 3 495.958462 1484.85356 0.3068 0.00015216 1.0092 0.00050053 1.316 0.00065269 495.9587190539077 99.754 0.19142 99.754 99.568 99.759 0 61 22 5 0 0 0 0.68024 1 24280 24280 0.50596 0.41111 1 540100 23081 58 14402 14411 27285 27285 0.13052490343147838 LKNKKERERER 11 Unmodified _LKNKKERERER_ 0 0 0 AluJb_dup674|chr1:9694689-9694991:+|1.2462350042219568|0.0081834574956271|7.25|151.0|4|1|sense AluJb_dup674|chr1:9694689-9694991:+|1.2462350042219568|0.0081834574956271|7.25|151.0|4|1|sense AluJb_dup674|chr1:9694689-9694991:+|1.2462350042219568|0.0081834574956271|7.25|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 495.9592590332031 3 495.958462 1484.85356 NaN NaN NaN NaN NaN NaN NaN 96.025 1 99.806 99.306 100.31 3.7804 0 0 0 0.38417 1 22809 22809 0.50596 0 1 23082 58 14402 14411 27286 27286 0.13052490343147838 LKNKKTKKK 9 Unmodified _LKNKKTKKK_ 0 0 0 L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|18|1|sense L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|18|1|sense L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 558.3851318359375 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 117.09 1 117.09 116.59 117.59 0 0 0 0 0.40098 1 29010 29010 0.45834 0 1 23083 11700 14403 14412 27287 27287 0.20222538836060266 LKNKTQMY 8 Unmodified _LKNKTQMY_ 0 0 0 REV__ENSG00000187017|ENST00000645284|ESPN REV__ENSG00000187017|ENST00000645284|ESPN MSMS UPN46_class_I_Rep_3 1 513.2742309570312 2 513.276052 1024.53755 NaN NaN NaN NaN NaN NaN NaN 94.245 1 94.245 93.745 94.745 0 0 0 0 0.40643 1 22862 22862 2.0598 0 1 + 23084 20914 14404 14413 27288 27288 0.02626400571148224 LKNLKIQR 8 Unmodified _LKNLKIQR_ 0 0 0 ENSG00000214367.9,HAUS3,chr4,-,I2.1,2239044,2240037|30|9.03|1|intron;nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3 ENSG00000214367.9,HAUS3,chr4,-,I2.1,2239044,2240037|30|9.03|1|intron ENSG00000214367.9,HAUS3,chr4,-,I2.1,2239044,2240037|30|9.03|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 506.83477783203125 2 506.834926 1011.6553 0.37728 0.00019122 -0.27871 -0.00014126 0.098569 4.9958E-05 506.8346908244488 53.305 1.0324 56.915 56.525 57.558 3.6098 138 70 3 0 0 0 0.82752 1 11261 11261 8.5933 0 1 557270 23085 5614 14405 14414 27289 27289 0.1499372122211753 LKNNFTRH 8 Unmodified _LKNNFTRH_ 0 0 0 ENST00000373218.4_1_10:72183968-72184214:+|nuORF ENST00000373218.4_1_10:72183968-72184214:+|nuORF ENST00000373218.4_1_10:72183968-72184214:+|nuORF MSMS UPN48_class_I_Rep_2 6 515.7654418945312 2 515.283057 1028.55156 NaN NaN NaN NaN NaN NaN NaN 36.153 1 39.841 39.341 40.341 3.6877 0 0 0 0.40643 1 6046 6046 2.0598 0.21551 1 23086 6411 14406 14415 27290 27290 0.038428141144549954 LKNRNKAS 8 Unmodified _LKNRNKAS_ 0 0 0 L1MC2_dup1849|chr5:65513238-65514230:-|1.8668051338261265|0.0364148497862451|5.68|151.0|18|2|sense L1MC2_dup1849|chr5:65513238-65514230:-|1.8668051338261265|0.0364148497862451|5.68|151.0|18|2|sense L1MC2_dup1849|chr5:65513238-65514230:-|1.8668051338261265|0.0364148497862451|5.68|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 465.77734375 2 465.777608 929.540663 -0.060923 -2.8377E-05 -0.057549 -2.6805E-05 -0.11847 -5.5182E-05 465.77745004481017 73.356 0.51876 76.592 76.533 77.052 3.2363 66 47 2 0 0 0 0.82752 1 18096 18096 0.69038 0 1 121150 23087 11228 14407 14416 27291 27291 0.07307411740168845 LKNRQSVVKLK 11 Unmodified _LKNRQSVVKLK_ 0 0 0 MLT1H_dup3190|chr5:37326336-37326789:+|1.1438384986164265|0.2734714233971737|2.06|151.0|28|2|anti-sense MLT1H_dup3190|chr5:37326336-37326789:+|1.1438384986164265|0.2734714233971737|2.06|151.0|28|2|anti-sense MLT1H_dup3190|chr5:37326336-37326789:+|1.1438384986164265|0.2734714233971737|2.06|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_1 5 438.2846984863281 3 438.285628 1311.83505 NaN NaN NaN NaN NaN NaN NaN 73.846 1 77.327 76.827 77.827 3.4812 0 0 0 0.38417 1 17425 17425 0.50596 0 1 23088 16425 14408 14417 27292 27292 0.19160980439255582 LKPDKITTRK 10 Unmodified _LKPDKITTRK_ 0 0 0 L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 600.3646240234375 2 600.377155 1198.73976 NaN NaN NaN NaN NaN NaN NaN 88.195 1 91.642 91.142 92.142 3.4471 0 0 0 0.53105 1 21933 21933 1.4819 0 1 23089 8816 14409 14418 27293 27293 0.1483362724818562 LKPDKITTRK 10 Unmodified _LKPDKITTRK_ 0 0 0 L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense MSMS UPN47_class_I_Rep_3 4 600.3760375976562 2 600.377155 1198.73976 NaN NaN NaN NaN NaN NaN NaN 88.258 1 91.645 91.145 92.145 3.3873 0 0 0 0.53105 1 22134 22134 1.4819 0 1 23090 8816 14409 14418 27294 27294 0.1483362724818562 LKPDKITTRK 10 Unmodified _LKPDKITTRK_ 0 0 0 L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|20|3|sense MSMS UPN48_class_I_Rep_3 7 600.3759765625 2 600.377155 1198.73976 NaN NaN NaN NaN NaN NaN NaN 88.085 1 91.896 91.396 92.396 3.8104 0 0 0 0.53105 1 20906 20906 1.4819 0 1 23091 8816 14409 14418 27295 27295 0.1483362724818562 LKPIIAYVL 9 Unmodified _LKPIIAYVL_ 0 0 0 REV__L1MA3_dup6552|chr11:93712895-93714249:-|1.8990506994804|0.1041638125050561|4.19|151.0|15|1|sense REV__L1MA3_dup6552|chr11:93712895-93714249:-|1.8990506994804|0.1041638125050561|4.19|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 515.3375244140625 2 515.338978 1028.6634 NaN NaN NaN NaN NaN NaN NaN 79.245 1 82.887 82.387 83.387 3.6423 0 0 0 0.40038 1 18782 18782 0.6015 0 1 + 23092 25084 14410 14419 27296 27296 0.1502185541887684 LKPIPAIHH 9 Unmodified _LKPIPAIHH_ 0 0 0 REV__L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|9|1|sense REV__L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 513.3171997070312 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 46.02 1 49.778 49.278 50.278 3.7579 0 0 0 0.39326 1 8946 8946 2.3027 0 1 + 23093 30041 14411 14420 27297 27297 0.10686049676360199 LKPIRWKPRY 10 Unmodified _LKPIRWKPRY_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN48_class_I_Rep_1 5 452.9488220214844 3 452.946946 1355.81901 NaN NaN NaN NaN NaN NaN NaN 102.42 1 106.04 105.54 106.54 3.6164 0 0 0 0.53105 1 24697 24697 0.13989 0.017027 1 + 23094 19771 14412 14421 27298 27298 0.1553331899301611 LKPKVNQQLT 10 Unmodified _LKPKVNQQLT_ 0 0 0 L1MEd_dup5178|chr4:39017479-39018738:-|1.5130625431778402|0.0073671882003451|7.68|151.0|64|1|anti-sense L1MEd_dup5178|chr4:39017479-39018738:-|1.5130625431778402|0.0073671882003451|7.68|151.0|64|1|anti-sense L1MEd_dup5178|chr4:39017479-39018738:-|1.5130625431778402|0.0073671882003451|7.68|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_1 5 584.8577270507812 2 584.856055 1167.69756 NaN NaN NaN NaN NaN NaN NaN 82.967 1 86.554 86.054 87.054 3.5871 0 0 0 0.53105 1 19828 19828 0.40072 0 1 23095 13208 14413 14422 27299 27299 0.12041651839831502 LKPLPLCNA 9 Unmodified _LKPLPLCNA_ 0 0 0 L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|235|2|anti-sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|235|2|anti-sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|235|2|anti-sense MSMS UPN48_class_I_Rep_2 6 484.8396911621094 2 484.783513 967.552473 NaN NaN NaN NaN NaN NaN NaN 115.62 1 119.28 118.78 119.78 3.6607 0 0 0 0.39518 1 27680 27680 1.8442 1.0506 1 23096 13703 14414 14423 27300 27300 0.0673989243913411 LKPPRSLLHF 10 Unmodified _LKPPRSLLHF_ 0 0 0 REV__Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|136|3|anti-sense REV__Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|136|3|anti-sense MSMS UPN47_class_I_Rep_3 4 604.3674926757812 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 97.668 1 101.09 100.59 101.59 3.4216 0 0 0 0.53105 1 24204 24204 1.8442 0.19162 1 + 23097 32575 14415 14424 27301 27301 0.12861965801971564 LKPSDPELT 9 Unmodified _LKPSDPELT_ 0 0 0 REV__MER110A_dup410|chr10:87260252-87260708:-|1.0045716527219382|0.060203990167464|4.06|150.0|13|3|sense REV__MER110A_dup410|chr10:87260252-87260708:-|1.0045716527219382|0.060203990167464|4.06|150.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 500.2720642089844 2 500.27149 998.528426 NaN NaN NaN NaN NaN NaN NaN 65.008 1 68.263 67.763 68.763 3.2556 0 0 0 0.17222 1 15524 15524 18.146 0.011366 1 + 23098 31074 14416 14425 27302 27302 0.029103304864634083 LKPTPLIV 8 Unmodified _LKPTPLIV_ 0 0 0 REV__Tigger13a_dup1435|chr7:105025611-105026124:+|1.8698421572742936|0.0112699079308518|7.37|151.0|27|1|anti-sense REV__Tigger13a_dup1435|chr7:105025611-105026124:+|1.8698421572742936|0.0112699079308518|7.37|151.0|27|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7994689941406 2 440.796946 879.57934 0.14779 6.5145E-05 1.8381 0.00081022 1.9859 0.00087537 440.7994038862202 65.932 0.83514 69.418 69.041 69.876 3.4866 95 58 2 0 0 0 0.82752 1 15061 15061 0.79363 0 1 131600 + 23099 32583 14417 14426 27303 27303 0.1347332432200119 LKQELDVY 8 Unmodified _LKQELDVY_ 0 0 0 REV__ENSG00000183128|ENST00000369783|CALHM3 REV__ENSG00000183128|ENST00000369783|CALHM3 MULTI-MSMS UPN46_class_I_Rep_3 1 504.2742004394531 2 504.274032 1006.53351 0.28688 0.00014467 0.11858 5.9798E-05 0.40546 0.00020446 504.2740022942348 76.784 0.46613 76.784 76.522 76.988 0 101 48 3 0 0 0 0.82752 1 17926 17926 39.957 3.8303 1 483120 + 23100 20775 14418 14427 27304 27304 0.030506343490856125 LKQELDVY 8 Unmodified _LKQELDVY_ 0 0 0 REV__ENSG00000183128|ENST00000369783|CALHM3 REV__ENSG00000183128|ENST00000369783|CALHM3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 504.274032 1006.53351 0.28688 0.00014467 0.11858 5.9798E-05 0.40546 0.00020446 504.2740022942348 76.784 0.46613 76.784 76.522 76.988 0 0.032995 3.1555E-05 NaN 39.957 101 48 3 NaN NaN NaN NaN 0 NaN NaN 0 483120 + 23101 20775 14418 14427 0.030506343490856125 LKQELDVY 8 Unmodified _LKQELDVY_ 0 0 0 REV__ENSG00000183128|ENST00000369783|CALHM3 REV__ENSG00000183128|ENST00000369783|CALHM3 MULTI-MATCH UPN47_class_I_Rep_1 2 2 504.274032 1006.53351 0.19692 9.9299E-05 -0.15138 -7.6335E-05 0.04554 2.2965E-05 504.27388323941886 73.324 0.25998 76.711 76.493 76.753 3.3861 -0.040112 -0.00024071 NaN 39.957 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 67928 + 23102 20775 14418 14427 0.030506343490856125 LKQELDVY 8 Unmodified _LKQELDVY_ 0 0 0 REV__ENSG00000183128|ENST00000369783|CALHM3 REV__ENSG00000183128|ENST00000369783|CALHM3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 504.274032 1006.53351 0.18174 9.1647E-05 0.062304 3.1418E-05 0.24404 0.00012307 504.27405801460145 73.453 0.33818 76.758 76.665 77.003 3.3048 0.0071166 -2.5205E-05 NaN 39.957 42 28 2 NaN NaN NaN NaN 0 NaN NaN 0 58200 + 23103 20775 14418 14427 0.030506343490856125 LKQELLRHFL 10 Unmodified _LKQELLRHFL_ 0 0 0 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 MSMS UPN47_class_I_Rep_2 3 648.8941040039062 2 648.892972 1295.77139 NaN NaN NaN NaN NaN NaN NaN 102.07 1 105.58 105.08 106.08 3.5151 0 0 0 0.53105 1 24869 24869 1.4819 0 1 23104 3168 14419 14428 27305 27305 0.13533620002181124 LKQFDKQAY 9 Unmodified _LKQFDKQAY_ 0 0 0 REV__ENST00000509410.1_1_5:33461160-33466106:+|nuORF REV__ENST00000509410.1_1_5:33461160-33466106:+|nuORF MSMS UPN48_class_I_Rep_2 6 570.8068237304688 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 55.978 1 59.512 59.012 60.012 3.5333 0 0 0 0.32573 1 11981 11981 9.3831 1.2276 1 + 23105 22730 14420 14429 27306 27306 0.0332941450603812 LKQFEEQV 8 Unmodified _LKQFEEQV_ 0 0 0 REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF REV__ENST00000418777.5_1_9:16418989-16435690:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 510.77166748046875 2 510.771657 1019.52876 0.31352 0.00016014 -0.0588 -3.0033E-05 0.25472 0.0001301 510.7715483806647 83.786 0.076996 83.786 83.756 83.833 0 8 6 2 0 0 0 0.82752 1 19919 19919 5.7319 0 1 564920 + 23106 22235 14421 14430 27307 27307 0.019777502063334396 LKQFFVDR 8 Unmodified _LKQFFVDR_ 0 0 0 REV__MARNA_dup183|chr1:198868971-198869268:+|2.086025513436357|0.0102448077313275|7.67|149.0|4|1|sense REV__MARNA_dup183|chr1:198868971-198869268:+|2.086025513436357|0.0102448077313275|7.67|149.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 526.7968139648438 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 21.994 1 25.418 24.918 25.918 3.4241 0 0 0 0.40625 1 2541 2541 2.3027 0 1 + 23107 31057 14422 14431 27308 27308 0.05773753059793307 LKQGMTWPR 9 Unmodified _LKQGMTWPR_ 0 0 0 REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3 REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3 MSMS UPN47_class_I_Rep_1 2 558.8021850585938 2 558.802768 1115.59098 NaN NaN NaN NaN NaN NaN NaN 20.425 1 24.069 23.569 24.569 3.6436 0 0 0 0.39518 1 2049 2049 1.8442 0 1 + 23108 20988 14423 14432 27309 27309 0.03781198073647829 LKQGNKERL 9 Unmodified _LKQGNKERL_ 0 0 0 REV__L1MB7_dup20366|chr18:2679500-2680834:-|3.48315334681486|0.0459273045442103|6.24|151.0|17|1|sense REV__L1MB7_dup20366|chr18:2679500-2680834:-|3.48315334681486|0.0459273045442103|6.24|151.0|17|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 543.3245849609375 2 543.324922 1084.63529 0.40992 0.00022272 -0.38835 -0.000211 0.02157 1.1719E-05 543.3245234853083 34.981 0.9281 38.653 38.375 39.303 3.6721 201 100 3 0 0 0 0.37599 1 5733 5733 9.3831 1.2276 1 369270 + 23109 26204 14424 14433 27310 27310 0.09635925491511443 LKQIFYLSP 9 Unmodified _LKQIFYLSP_ 0 0 0 REV__L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|173|3|sense REV__L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|173|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 554.3055419921875 2 554.823692 1107.63283 0.40553 0.00022499 -0.083001 -4.6051E-05 0.32252 0.00017894 554.8235416078861 69.828 0.23838 73.104 73.045 73.283 3.2761 37 19 2 0 0 0 0.12321 1 17032 17032 0.40072 0 1 110500 + 23110 29730 14425 14434 27311 27311 0.0833207703383323 LKQIFYLSP 9 Unmodified _LKQIFYLSP_ 0 0 0 REV__L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|173|3|sense REV__L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|173|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 554.3052368164062 2 554.823692 1107.63283 0.44293 0.00024575 -0.32235 -0.00017885 0.12058 6.6901E-05 554.8233159999572 69.661 0.74535 72.865 72.485 73.23 3.2044 86 57 2 0 0 0 0.11309 1 16952 16952 13.906 0 1 119880 + 23111 29730 14425 14434 27312 27312 0.0833207703383323 LKQKEINVLL 10 Unmodified _LKQKEINVLL_ 0 0 0 REV__ENSG00000170903|ENST00000301919|MSANTD4 REV__ENSG00000170903|ENST00000301919|MSANTD4 MSMS UPN46_class_I_Rep_3 1 599.380615234375 2 599.381906 1196.74926 NaN NaN NaN NaN NaN NaN NaN 99.001 1 99.001 98.501 99.501 0 0 0 0 0.53105 1 24108 24108 2.9952 0 1 + 23112 20387 14426 14435 27313 27313 0.15875395533748815 LKQKGYFF 8 Unmodified _LKQKGYFF_ 0 0 0 ENST00000514308.3_1_4:186423450-186427817:-|nuORF;ENST00000514142.5_1_4:186423450-186434727:-|nuORF;nc|ENSG00000154553|Q53GG5-2|PDLIM3;ENSG00000154553|ENST00000284767|PDLIM3 ENST00000514308.3_1_4:186423450-186427817:-|nuORF ENST00000514308.3_1_4:186423450-186427817:-|nuORF MSMS UPN48_class_I_Rep_2 6 515.7902221679688 2 515.789653 1029.56475 NaN NaN NaN NaN NaN NaN NaN 73.588 1 77.165 76.665 77.665 3.5779 0 0 0 0.40404 1 17284 17284 5.2307 0.47466 1 23113 3677 14427 14436 27314 27314 0.051152521738458745 LKQKNNER 8 Unmodified _LKQKNNER_ 0 0 0 L1ME3G_dup6907|chr7:38355985-38356748:+|1.5524902454483147|0.106650361517768|3.86|151.0|1|1|sense;L1ME3G_dup6905|chr7:38351153-38351421:+|1.095485831533998|0.055481988020477|4.3|149.0|1|1|sense L1ME3G_dup6907|chr7:38355985-38356748:+|1.5524902454483147|0.106650361517768|3.86|151.0|1|1|sense L1ME3G_dup6907|chr7:38355985-38356748:+|1.5524902454483147|0.106650361517768|3.86|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 515.2935180664062 2 515.293622 1028.57269 NaN NaN NaN NaN NaN NaN NaN 28.383 1 28.383 27.883 28.883 0 0 0 0 0.40625 1 4349 4349 2.3027 0 1 23114 12845 14428 14437 27315 27315 0.05954779423313994 LKQKQQLRKRH 11 Unmodified _LKQKQQLRKRH_ 0 0 0 REV__L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|32|1|sense REV__L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|32|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.3059387207031 3 488.307426 1461.90045 0.25489 0.00012446 -1.2285 -0.0005999 -0.97365 -0.00047544 488.3062309217728 63.216 0.22361 66.725 66.636 66.86 3.5091 30 17 3 0 0 0 0.67356 1 14140 14140 1.1098 0 1 166420 + 23115 29092 14429 14438 27316 27316 0.1879739468495245 LKQLRVLQLM 10 Unmodified _LKQLRVLQLM_ 0 0 0 ENSG00000187122|ENST00000266058|SLIT1;nc|ENSG00000187122|O75093-2|SLIT1;ENST00000456008.2_1_10:98917340-98945578:-|nuORF ENSG00000187122|ENST00000266058|SLIT1 ENSG00000187122|ENST00000266058|SLIT1 MSMS UPN47_class_I_Rep_1 2 621.3917236328125 2 621.391751 1240.76895 NaN NaN NaN NaN NaN NaN NaN 97.132 1 100.91 100.41 101.41 3.7767 0 0 0 0.53105 1 24075 24075 0.40072 0 1 23116 5182 14430 14439 27317 27317 0.15819448272850423 LKQQFIPLH 9 Unmodified _LKQQFIPLH_ 0 0 0 REV__HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|180|3|anti-sense REV__HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|180|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 561.9808349609375 2 562.334759 1122.65496 0.43986 0.00024735 1.2588 0.00070787 1.6987 0.00095522 563.3400627369351 110.13 0.2477 113.76 113.72 113.97 3.6326 65 36 3 0 0 0 0.12462 1 26777 26777 1.8442 0 1 342210 + 23117 23652 14431 14440 27318 27318 0.09854301502286944 LKQQKEII 8 Unmodified _LKQQKEII_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MSMS UPN47_class_I_Rep_3 4 500.3130187988281 2 500.313492 998.612431 NaN NaN NaN NaN NaN NaN NaN 37.293 1 40.54 40.04 41.04 3.247 0 0 0 0.40659 1 7135 7135 1.8442 0 1 23118 1025 14432 14441 27319 27319 0.11306906374034043 LKQRWLFFFYF 11 Unmodified _LKQRWLFFFYF_ 0 0 0 REV__LTR2_dup115|chr2:181489841-181490300:-|1.5196228583105549|0.0345152087123198|5.46|150.0|30|2|anti-sense REV__LTR2_dup115|chr2:181489841-181490300:-|1.5196228583105549|0.0345152087123198|5.46|150.0|30|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.6240234375 3 532.29049 1593.84964 0.34271 0.00018242 -0.76827 -0.00040894 -0.42556 -0.00022652 532.2905018602831 45.926 0.86092 49.683 49.338 50.199 3.7579 134 59 3 0 0 0 0.68478 1 8848 8848 0.094841 0 1 528240 + 23119 30875 14433 14442 27320 27320 0.07647052587412873 LKQTHKSKS 9 Unmodified _LKQTHKSKS_ 0 0 0 REV__L1PA4_dup4970|chr6:119373605-119376410:-|1.385290244742229|0.4292382336400565|1.69|151.0|56|3|sense REV__L1PA4_dup4970|chr6:119373605-119376410:-|1.385290244742229|0.4292382336400565|1.69|151.0|56|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.8121948242188 2 528.811648 1055.60874 -0.27671 -0.00014633 -0.0051964 -2.7479E-06 -0.2819 -0.00014907 528.8116543014431 28.641 0.449 31.975 31.803 32.252 3.3337 63 37 2 0 0 0 0.49187 1 4480 4480 1.4819 0.68827 1 45231 + 23120 29643 14434 14443 27321 27321 0.08316236600194316 LKQVLCVARK 10 Unmodified _LKQVLCVARK_ 0 0 0 L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.3656616210938 2 579.362993 1156.71143 0.50628 0.00029332 1.9264 0.0011161 2.4326 0.0014094 579.364992934907 109.31 0.5169 112.85 112.71 113.23 3.5347 132 69 3 0 0 0 0.54466 1 26878 26878 6.2058 2.2614 1 3873100 23121 12607 14435 14444 27322 27322 0.13934606067277855 LKQVLCVARK 10 Unmodified _LKQVLCVARK_ 0 0 0 L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.3657836914062 2 579.362993 1156.71143 0.47916 0.00027761 1.485 0.00086034 1.9641 0.0011379 579.3648586653136 109.29 0.35269 112.97 112.81 113.17 3.6715 96 45 3 0 0 0 0.54466 1 26051 26051 6.2058 0 1 2743900 23122 12607 14435 14444 27323 27323 0.13934606067277855 LKQVLCVARK 10 Unmodified _LKQVLCVARK_ 0 0 0 L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense L1ME3_dup825|chr2:28769462-28769986:+|1.868796931238724|0.07686779401807|4.6|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.3512573242188 2 579.362993 1156.71143 0.48555 0.00028131 1.1359 0.00065808 1.6214 0.00093939 579.3643226227822 109.24 0.40254 112.91 112.8 113.2 3.6751 123 54 3 0 0 0 0.54466 2 25976 25938;25976 6.2058 0.60125 1 3072300 23123 12607 14435 14444 27324;27325 27325 0.13934606067277855 LKRALHNNK 9 Unmodified _LKRALHNNK_ 0 0 0 L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense MSMS UPN47_class_I_Rep_1 2 547.3330688476562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 102.64 1 106.42 105.92 106.92 3.7788 0 0 0 0.4007 1 25255 25255 0.52476 0 1 23124 13737 14436 14445 27326 27326 0.108990514482457 LKRALHNNK 9 Unmodified _LKRALHNNK_ 0 0 0 L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense MSMS UPN47_class_I_Rep_2 3 547.3325805664062 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 83.822 1 87.234 86.734 87.734 3.4116 0 0 0 0.4007 1 20901 20901 0.52476 0 1 23125 13737 14436 14445 27327 27327 0.108990514482457 LKRALHNNK 9 Unmodified _LKRALHNNK_ 0 0 0 L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|61|2|sense MSMS UPN48_class_I_Rep_3 7 547.332763671875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 90.883 1 94.73 94.23 95.23 3.847 0 0 0 0.4007 1 21553 21553 0.52476 0 1 23126 13737 14436 14445 27328 27328 0.108990514482457 LKRALWAL 8 Unmodified _LKRALWAL_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MULTI-MSMS UPN47_class_I_Rep_1 2 485.811767578125 2 485.813462 969.612371 0.11753 5.7098E-05 -3.1992 -0.0015542 -3.0816 -0.0014971 485.8116804246998 64.814 0.38733 68.169 68.076 68.463 3.3557 38 30 2 0 0 0 0.82752 1 15442 15442 0.79363 0 1 566130 23127 1956 14437 14446 27329 27329 0.12634951164670838 LKRALWAL 8 Unmodified _LKRALWAL_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MSMS UPN47_class_I_Rep_1 2 485.81097412109375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 39.361 1 43.027 42.527 43.527 3.6666 0 0 0 0.40738 1 7689 7689 0.79363 0 1 23128 1956 14437 14446 27330 27330 0.12634951164670838 LKREFVNF 8 Unmodified _LKREFVNF_ 0 0 0 L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|37|3|sense L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|37|3|sense L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 526.7977905273438 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 18.187 1 21.577 21.077 22.077 3.3898 0 0 0 0.40746 1 1495 1495 0.69038 0 1 23129 13400 14438 14447 27331 27331 0.05773753059793307 LKRGKDLD 8 Unmodified _LKRGKDLD_ 0 0 0 L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|3|1|sense L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|3|1|sense L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 472.77960205078125 2 472.779816 943.545079 NaN NaN NaN NaN NaN NaN NaN 21.518 1 21.518 21.018 22.018 0 0 0 0 0.40746 1 2417 2417 0.69038 0 1 23130 10736 14439 14448 27332 27332 0.07104876163066365 LKRIALALS 9 Unmodified _LKRIALALS_ 0 0 0 REV__L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|28|3|sense REV__L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|28|3|sense MSMS UPN48_class_I_Rep_2 6 492.8309326171875 2 492.831852 983.649151 NaN NaN NaN NaN NaN NaN NaN 65.578 1 69.058 68.558 69.558 3.4792 0 0 0 0.38478 1 14916 14916 4.3292 0 1 + 23131 26023 14440 14449 27333 27333 0.15667202990584883 LKRKGWWL 8 Unmodified _LKRKGWWL_ 0 0 0 ENST00000586255.5_1_19:9448675-9449241:+|nuORF ENST00000586255.5_1_19:9448675-9449241:+|nuORF ENST00000586255.5_1_19:9448675-9449241:+|nuORF MSMS UPN48_class_I_Rep_3 7 543.832275390625 2 543.832186 1085.64982 NaN NaN NaN NaN NaN NaN NaN 21.808 1 25.523 25.023 26.023 3.7144 0 0 0 0.40746 1 2118 2118 0.69038 0 1 23132 7585 14441 14450 27334 27334 0.11042042430312904 LKRKKLMPKM 10 Unmodified _LKRKKLMPKM_ 0 0 0 REV__ENSG00000214842|ENST00000399080|RAD51AP2 REV__ENSG00000214842|ENST00000399080|RAD51AP2 MSMS UPN46_class_I_Rep_3 1 636.9026489257812 2 636.903971 1271.79339 NaN NaN NaN NaN NaN NaN NaN 93.103 1 93.103 92.603 93.603 0 0 0 0 0.53105 1 22554 22554 0.40072 0.050084 1 + 23133 21269 14442 14451 27335 27335 0.1683638515473831 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 638.9320678710938 2 638.932431 1275.85031 0.51431 0.00032861 -0.78113 -0.00049909 -0.26682 -0.00017048 638.9320469348078 107.98 0.33668 111.52 111.37 111.7 3.5382 55 38 2 0 0 0 0.56309 2 26393 26393;26440 1.6526 0 1 2839200 23134 10554 14443 14452 27336;27337 27336 0.22341892027111498 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 638.931884765625 2 638.932431 1275.85031 0.49868 0.00031862 -0.94535 -0.00060402 -0.44668 -0.0002854 638.9318491214669 107.83 0.21741 111.51 111.37 111.59 3.6783 32 22 2 0 0 0 0.56309 1 25520 25520 1.6526 0 1 3249200 23135 10554 14443 14452 27338 27338 0.22341892027111498 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 638.9317016601562 2 638.932431 1275.85031 0.6302 0.00040265 -0.9391 -0.00060002 -0.30891 -0.00019737 638.9317653154615 107.89 0.27821 111.57 111.38 111.66 3.6813 46 29 2 0 0 0 0.56309 1 25496 25496 1.6526 0 1 3471400 23136 10554 14443 14452 27339 27339 0.22341892027111498 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 638.932431 1275.85031 0.63445 0.00040537 -1.3347 -0.00085281 -0.70029 -0.00044744 638.9317366355074 107.9 0.11054 111.43 111.37 111.49 3.5345 -0.078504 -0.00046085 NaN 1.6526 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1748000 23137 10554 14443 14452 0.22341892027111498 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 638.932431 1275.85031 0.51431 0.00032861 -0.78113 -0.00049909 -0.26682 -0.00017048 638.9320469348078 107.98 0.33668 111.52 111.37 111.7 3.5382 0.012884 0.00024659 NaN 1.6526 55 38 2 NaN NaN NaN NaN 0 NaN NaN 0 2839200 23138 10554 14443 14452 0.22341892027111498 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 638.932431 1275.85031 0.49868 0.00031862 -0.94535 -0.00060402 -0.44668 -0.0002854 638.9318491214669 107.83 0.21741 111.51 111.37 111.59 3.6783 -0.0020082 3.6732E-05 NaN 1.6526 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3249200 23139 10554 14443 14452 0.22341892027111498 LKRKLIKQIH 10 Unmodified _LKRKLIKQIH_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|28|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 638.932431 1275.85031 0.6302 0.00040265 -0.9391 -0.00060002 -0.30891 -0.00019737 638.9317653154615 107.89 0.27821 111.57 111.38 111.66 3.6813 0.06198 4.4719E-05 NaN 1.6526 46 29 2 NaN NaN NaN NaN 0 NaN NaN 0 3471400 23140 10554 14443 14452 0.22341892027111498 LKRKRKLGVVP 11 Unmodified _LKRKRKLGVVP_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MSMS UPN47_class_I_Rep_3 4 647.44580078125 2 647.445706 1292.87686 0.51511 0.0003335 -0.58745 -0.00038034 -0.072341 -4.6837E-05 647.4451500354543 108.06 0.1361 111.6 111.49 111.62 3.5382 24 15 2 0 0 0 0.67113 1 26390 26390 1.3295 0.87119 1 2328600 23141 3860 14444 14453 27340 27340 0.24213580918444677 LKRKRKLGVVP 11 Unmodified _LKRKRKLGVVP_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MSMS UPN48_class_I_Rep_2 6 647.44482421875 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.55 111.05 112.05 3.6783 0 0 0 0.38417 1 25536 25536 1.3295 0.13619 1 23142 3860 14444 14453 27341 27341 0.24213580918444677 LKRKSCYYF 9 Unmodified _LKRKSCYYF_ 0 0 0 L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|2|1|sense L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|2|1|sense L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 604.2998046875 2 604.318251 1206.62195 NaN NaN NaN NaN NaN NaN NaN 32.721 1 36.175 35.675 36.675 3.4547 0 0 0 0.40038 1 5705 5705 0.6015 0 1 23143 11501 14445 14454 27342 27342 0.026903513879005914 LKRKSHHF 8 Unmodified _LKRKSHHF_ 0 0 0 REV__L1MB4_dup106|chr1:35824809-35825247:-|1.4313124187577182|0.0122125572747229|6.87|151.0|18|1|anti-sense REV__L1MB4_dup106|chr1:35824809-35825247:-|1.4313124187577182|0.0122125572747229|6.87|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 526.7964477539062 2 526.809242 1051.60393 NaN NaN NaN NaN NaN NaN NaN 17.948 1 21.306 20.806 21.806 3.3581 0 0 0 0.40746 1 1404 1404 0.69038 0 1 + 23144 25935 14446 14455 27343 27343 0.08019397248085625 LKRKSKRKPG 10 Unmodified _LKRKSKRKPG_ 0 0 0 REV__L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|87|3|sense REV__L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|87|3|sense MSMS UPN48_class_I_Rep_1 5 599.8004760742188 2 599.398756 1196.78296 NaN NaN NaN NaN NaN NaN NaN 73.881 1 77.363 76.863 77.863 3.4812 0 0 0 0.53105 1 17435 17435 1.6526 0.32309 1 + 23145 28668 14447 14456 27344 27344 0.19243861816153185 LKRKYFQQC 9 Unmodified _LKRKYFQQC_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS UPN48_class_I_Rep_2 6 607.3296508789062 2 607.32915 1212.64375 0.38898 0.00023624 0.76377 0.00046386 1.1527 0.0007001 607.329647138768 47.576 1.1091 51.312 50.868 51.977 3.7361 145 91 2 0 0 0 0.49573 1 9512 9512 0.52476 0.12405 1 477620 23146 3958 14448 14457 27345 27345 0.045931561364795925 LKRNLEIK 8 Unmodified _LKRNLEIK_ 0 0 0 REV__nc|ENSG00000113522|Q92878-3|RAD50 REV__nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS UPN48_class_I_Rep_1 5 507.32666015625 2 507.326934 1012.63931 0.22423 0.00011376 -0.30924 -0.00015689 -0.085014 -4.313E-05 507.32669418180666 43.986 0.77041 47.499 47.31 48.081 3.5132 98 55 2 0 0 0 0.82752 1 8375 8375 10.074 0 1 173630 + 23147 18510 14449 14458 27346 27346 0.1335001498521251 LKRNLEIK 8 Unmodified _LKRNLEIK_ 0 0 0 REV__nc|ENSG00000113522|Q92878-3|RAD50 REV__nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS UPN48_class_I_Rep_2 6 507.32647705078125 2 507.326934 1012.63931 0.23505 0.00011925 -0.28771 -0.00014596 -0.05266 -2.6716E-05 507.3267229197443 43.799 0.85507 47.561 47.183 48.038 3.7617 124 67 2 0 0 0 0.82752 1 8243 8243 20.454 0 1 220370 + 23148 18510 14449 14458 27347 27347 0.1335001498521251 LKRNLEIK 8 Unmodified _LKRNLEIK_ 0 0 0 REV__nc|ENSG00000113522|Q92878-3|RAD50 REV__nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS UPN48_class_I_Rep_3 7 507.3267517089844 2 507.326934 1012.63931 0.19124 9.7023E-05 -0.41575 -0.00021092 -0.22451 -0.0001139 507.3266888535278 44.033 0.86243 47.672 47.199 48.062 3.6385 97 55 2 0 0 0 0.82752 1 8226 8226 14.838 0 1 156030 + 23149 18510 14449 14458 27348 27348 0.1335001498521251 LKRRIALR 8 Unmodified _LKRRIALR_ 0 0 0 REV__L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|11|1|sense REV__L1PA11_dup1686|chr6:143649328-143651857:+|2.513383655762307|0.0185284978174653|7.08|151.0|11|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 513.353271484375 2 513.35636 1024.69817 -0.12059 -6.1907E-05 -3.1622 -0.0016234 -3.2828 -0.0016853 513.3532135207518 21.83 0.14128 21.83 21.738 21.88 0 23 15 2 0 0 0 0.82752 1 2496 2496 0 0 1 39207 + 23150 29005 14450 14459 27349 27349 0.18680536070178277 LKRRNFFF 8 Unmodified _LKRRNFFF_ 0 0 0 L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|13|2|sense L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|13|2|sense L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 564.7722778320312 2 564.327268 1126.63998 NaN NaN NaN NaN NaN NaN NaN 19.638 1 22.989 22.489 23.489 3.3514 0 0 0 0.40746 1 1873 1873 0.69038 0 1 23151 14096 14451 14460 27350 27350 0.0817285442492448 LKRRNFFFK 9 Unmodified _LKRRNFFFK_ 0 0 0 L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|13|2|sense L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|13|2|sense L1PA16_dup5572|chr6:107937426-107938068:-|1.9122476287551529|0.0244424670649634|6.29|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 628.374755859375 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 38.942 1 38.942 38.442 39.442 0 0 0 0 0.4007 1 7450 7450 0.52476 0 1 23152 14096 14452 14461 27351 27351 0.11776787896110363 LKRRVVIRR 9 Unmodified _LKRRVVIRR_ 0 0 0 ERVL-B4-int_dup1766|chr8:39057921-39061531:-|1.3249607940145944|0.0533255787115025|4.63|150.0|132|1|anti-sense ERVL-B4-int_dup1766|chr8:39057921-39061531:-|1.3249607940145944|0.0533255787115025|4.63|150.0|132|1|anti-sense ERVL-B4-int_dup1766|chr8:39057921-39061531:-|1.3249607940145944|0.0533255787115025|4.63|150.0|132|1|anti-sense MSMS UPN48_class_I_Rep_2 6 598.8492431640625 2 598.41474 1194.81493 NaN NaN NaN NaN NaN NaN NaN 65.591 1 69.07 68.57 69.57 3.4792 0 0 0 0.4007 1 14920 14920 0.52476 0.066424 1 23153 7718 14453 14462 27352 27352 0.22531274289940484 LKRTWKHKRPK 11 Unmodified _LKRTWKHKRPK_ 0 0 0 L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|141|3|sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|141|3|sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|141|3|sense MSMS UPN46_class_I_Rep_3 1 493.3141784667969 3 493.3124 1476.91537 NaN NaN NaN NaN NaN NaN NaN 76.971 1 76.971 76.471 77.471 0 0 0 0 0.38417 1 17974 17974 0.094841 0 1 23154 9458 14454 14463 27353 27353 0.1959888655294435 LKSCFKSLST 10 Unmodified _LKSCFKSLST_ 0 0 0 REV__ENSG00000108306.13,FBXL20,chr17,-,I10.1,39281464,39282728|63|10.56|3|intron REV__ENSG00000108306.13,FBXL20,chr17,-,I10.1,39281464,39282728|63|10.56|3|intron MSMS UPN48_class_I_Rep_1 5 557.3031616210938 2 557.302267 1112.58998 NaN NaN NaN NaN NaN NaN NaN 58.91 1 62.397 61.897 62.897 3.487 0 0 0 0.53105 1 12897 12897 1.1933 0 1 + 23155 18375 14455 14464 27354 27354 0.03818938914105274 LKSILYNEL 9 Unmodified _LKSILYNEL_ 0 0 0 MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|5|1|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|5|1|sense MER21C_dup2938|chr9:85611983-85612896:+|1.3672674191112166|0.009971063919876|7.1|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.80029296875 2 546.818607 1091.62266 0.35358 0.00019334 -0.09727 -5.3189E-05 0.25631 0.00014015 546.8184325427327 65.171 0.36798 68.427 68.282 68.65 3.2556 34 28 2 0 0 0 0.37599 1 15632 15632 9.3831 2.0939 1 74801 23156 15892 14456 14465 27355 27355 0.08051469308588821 LKSIMKKKDY 10 Unmodified _LKSIMKKKDY_ 0 0 0 nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4 nc|ENSG00000132854|Q5T7N3-2|KANK4 nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN46_class_I_Rep_3 1 627.3674926757812 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 14.088 1 14.088 13.588 14.588 0 0 0 0 0.53105 1 549 549 1.1933 0 1 23157 2780 14457 14466 27356 27356 0.10507749282010082 LKSIMLCKKKP 11 Unmodified _LKSIMLCKKKP_ 0 0 0 L1MD2_dup3645|chr6:73050406-73051133:-|1.2387979521843986|0.0101660908291144|6.93|150.0|14|2|sense L1MD2_dup3645|chr6:73050406-73051133:-|1.2387979521843986|0.0101660908291144|6.93|150.0|14|2|sense L1MD2_dup3645|chr6:73050406-73051133:-|1.2387979521843986|0.0101660908291144|6.93|150.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 430.255859375 3 430.2663 1287.77707 NaN NaN NaN NaN NaN NaN NaN 46.729 1 46.729 46.229 47.229 0 0 0 0 0.38417 1 9602 9602 1.1098 0.33322 1 23158 11996 14458 14467 27357 27357 0.14469259197949214 LKSIMRGELDK 11 Unmodified _LKSIMRGELDK_ 0 0 0 REV__MLT1A0-int_dup816|chr15:30856505-30857051:-|1.5320862669009074|0.001711422209323|9.81|149.0|14|3|sense REV__MLT1A0-int_dup816|chr15:30856505-30857051:-|1.5320862669009074|0.001711422209323|9.81|149.0|14|3|sense MSMS UPN47_class_I_Rep_2 3 645.3646240234375 2 645.36593 1288.71731 NaN NaN NaN NaN NaN NaN NaN 104.09 1 107.62 107.12 108.12 3.5289 0 0 0 0.38417 1 25288 25288 4.897 0 1 + 23159 31606 14459 14468 27358 27358 0.08449659788288955 LKSIVLWLG 9 Unmodified _LKSIVLWLG_ 0 0 0 HERVK3-int_dup254|chr19:11853714-11854477:-|2.6907592170053136|0.1441162237866286|4.22|150.0|15|2|sense HERVK3-int_dup254|chr19:11853714-11854477:-|2.6907592170053136|0.1441162237866286|4.22|150.0|15|2|sense HERVK3-int_dup254|chr19:11853714-11854477:-|2.6907592170053136|0.1441162237866286|4.22|150.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 514.8267211914062 2 514.828778 1027.643 NaN NaN NaN NaN NaN NaN NaN 41.324 1 44.996 44.496 45.496 3.6719 0 0 0 0.39428 1 8286 8286 2.0598 0 1 23160 8298 14460 14469 27359 27359 0.1302868475906962 LKSPSLVVL 9 Unmodified _LKSPSLVVL_ 0 0 0 REV__Tigger1_dup4216|chr5:87354220-87356383:+|3.5815134554902297|0.4763148507718404|2.91|151.0|130|3|anti-sense REV__Tigger1_dup4216|chr5:87354220-87356383:+|3.5815134554902297|0.4763148507718404|2.91|151.0|130|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.31268310546875 2 478.312961 954.611368 0.28613 0.00013686 -0.30337 -0.00014511 -0.017244 -8.2479E-06 478.31272853538 61.646 0.65652 65.119 64.816 65.472 3.4738 65 52 2 0 0 0 0.39745 2 13726 13688;13726 8.1555 2.0156 1 94931 + 23161 32442 14461 14470 27360;27361 27361 0.13224692005132965 LKSSTWELD 9 Unmodified _LKSSTWELD_ 0 0 0 REV__L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|116|3|sense REV__L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|116|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.7748413085938 2 539.774396 1077.53424 -0.0015743 -8.4976E-07 -0.31047 -0.00016759 -0.31205 -0.00016844 539.7741428938888 39.599 0.57139 42.978 42.713 43.285 3.3785 56 36 2 0 0 0 0.36392 1 7802 7802 10.074 0 1 92036 + 23162 29573 14462 14471 27362 27362 -0.001425710018565951 LKSTSAIYI 9 Unmodified _LKSTSAIYI_ 0 0 0 REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|26|1|anti-sense REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 498.2923583984375 2 498.292225 994.569897 0.20762 0.00010346 0.28686 0.00014294 0.49448 0.0002464 498.2922752569007 52.975 1.0395 56.494 56.045 57.084 3.5192 178 77 3 0 0 0 0.025281 4 11050 10971;11011;11050;11129 60.074 0 1 1529500 + 23163 28212 14463 14472 27363;27364;27365;27366 27365 0.07239511245791164 LKSTSAIYI 9 Unmodified _LKSTSAIYI_ 0 0 0 REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|26|1|anti-sense REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 498.2924499511719 2 498.292225 994.569897 0.33571 0.00016728 0.23568 0.00011744 0.57139 0.00028472 498.2922004604421 52.81 0.96547 56.42 56.038 57.003 3.6098 174 62 4 0 0 0 0.025281 2 11036 10953;11036 60.074 0 1 1678700 + 23164 28212 14463 14472 27367;27368 27368 0.07239511245791164 LKTGDTTLHY 10 Unmodified _LKTGDTTLHY_ 0 0 0 REV__ENST00000535257.1_1_12:122391860-122397069:+|nuORF REV__ENST00000535257.1_1_12:122391860-122397069:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 574.705322265625 2 574.800946 1147.58734 0.51861 0.0002981 -0.19114 -0.00010987 0.32747 0.00018823 574.8008121016798 56.617 0.32525 59.918 59.759 60.084 3.3009 29 19 3 0 0 0 0.84575 1 12943 12943 9.3831 2.66 1 120670 + 23165 19833 14464 14473 27369 27369 0.01944806780829822 LKTIKEFFVL 10 Unmodified _LKTIKEFFVL_ 0 0 0 REV__L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|105|3|sense REV__L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|105|3|sense MSMS UPN48_class_I_Rep_2 6 619.3817138671875 2 619.381374 1236.7482 NaN NaN NaN NaN NaN NaN NaN 110.59 1 114.26 113.76 114.76 3.669 0 0 0 0.53105 1 26306 26306 0.45834 0 1 + 23166 25000 14465 14474 27370 27370 0.13929181164826332 LKTIPDLTF 9 Unmodified _LKTIPDLTF_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MULTI-MSMS UPN48_class_I_Rep_1 5 524.3082275390625 2 524.307875 1046.6012 0.33501 0.00017565 -0.2697 -0.0001414 0.065312 3.4244E-05 524.3075884669769 70.555 0.32525 74.015 73.881 74.206 3.4598 57 32 2 0 0 0 0.15547 2 16468 16422;16468 24.991 0 1 175830 23167 4765 14466 14475 27371;27372 27372 0.07976084279880524 LKTIPDLTF 9 Unmodified _LKTIPDLTF_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MSMS UPN48_class_I_Rep_2 6 524.3070068359375 2 524.307875 1046.6012 NaN NaN NaN NaN NaN NaN NaN 70.144 1 73.68 73.18 74.18 3.5359 0 0 0 0.15288 1 16299 16299 19.362 0 1 23168 4765 14466 14475 27373 27373 0.07976084279880524 LKTIPDLTF 9 Unmodified _LKTIPDLTF_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MSMS UPN48_class_I_Rep_2 6 524.3079223632812 2 524.307875 1046.6012 NaN NaN NaN NaN NaN NaN NaN 70.269 1 73.805 73.305 74.305 3.5359 0 0 0 0.15288 1 16336 16336 19.362 0 1 23169 4765 14466 14475 27374 27374 0.07976084279880524 LKTIPDLTF 9 Unmodified _LKTIPDLTF_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MSMS UPN48_class_I_Rep_2 6 524.3082275390625 2 524.307875 1046.6012 NaN NaN NaN NaN NaN NaN NaN 70.387 1 73.923 73.423 74.423 3.5359 0 0 0 0.098423 1 16370 16370 24.991 0 1 23170 4765 14466 14475 27375 27375 0.07976084279880524 LKTIPDLTF 9 Unmodified _LKTIPDLTF_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MULTI-MSMS UPN48_class_I_Rep_3 7 524.3076782226562 2 524.307875 1046.6012 0.4907 0.00025728 -0.44042 -0.00023091 0.050281 2.6363E-05 524.3075056871395 70.159 0.45825 73.671 73.411 73.869 3.5128 75 36 3 0 0 0 0.15547 2 16241 16197;16241 24.991 0 1 153490 23171 4765 14466 14475 27376;27377 27377 0.07976084279880524 LKTKPHVH 8 Unmodified _LKTKPHVH_ 0 0 0 L1PA15_dup2471|chr5:39238993-39241335:+|1.506811677124802|0.0176242468656068|6.42|151.0|23|2|sense L1PA15_dup2471|chr5:39238993-39241335:+|1.506811677124802|0.0176242468656068|6.42|151.0|23|2|sense L1PA15_dup2471|chr5:39238993-39241335:+|1.506811677124802|0.0176242468656068|6.42|151.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 480.71490478515625 2 480.292894 958.571235 NaN NaN NaN NaN NaN NaN NaN 117.01 1 120.45 119.95 120.95 3.4425 0 0 0 0.40738 1 28810 28810 0.79363 0 1 23172 13901 14467 14476 27378 27378 0.0902919012522716 LKTPRRCYA 9 Unmodified _LKTPRRCYA_ 0 0 0 REV__ENST00000562866.1_1_16:89782895-89783186:+|nuORF REV__ENST00000562866.1_1_16:89782895-89783186:+|nuORF MSMS UPN47_class_I_Rep_2 3 554.279296875 2 554.308218 1106.60188 NaN NaN NaN NaN NaN NaN NaN 25.744 1 29.238 28.738 29.738 3.4945 0 0 0 0.39518 1 3621 3621 1.8442 1.0506 1 + 23173 23036 14468 14477 27379 27379 0.052846004479533804 LKTRTQTNTCM 11 Unmodified _LKTRTQTNTCM_ 0 0 0 L1MB4_dup5034|chrX:110041998-110042898:-|1.0707507691956266|0.0260541897892184|5.36|150.0|32|3|sense L1MB4_dup5034|chrX:110041998-110042898:-|1.0707507691956266|0.0260541897892184|5.36|150.0|32|3|sense L1MB4_dup5034|chrX:110041998-110042898:-|1.0707507691956266|0.0260541897892184|5.36|150.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 432.88519287109375 3 432.884807 1295.63259 NaN NaN NaN NaN NaN NaN NaN 98.485 1 101.92 101.42 102.42 3.4328 0 0 0 0.38417 1 24391 24391 0.40827 0 1 23174 10528 14469 14478 27380 27380 -0.003400340199505081 LKVHHTKQ 8 Unmodified _LKVHHTKQ_ 0 0 0 L1ME5_dup1167|chr6:2274089-2274345:+|1.208675101078923|0.0122327696361198|6.63|150.0|2|1|sense L1ME5_dup1167|chr6:2274089-2274345:+|1.208675101078923|0.0122327696361198|6.63|150.0|2|1|sense L1ME5_dup1167|chr6:2274089-2274345:+|1.208675101078923|0.0122327696361198|6.63|150.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 495.7963562011719 2 495.795801 989.577048 0.17397 8.6251E-05 -1.5901 -0.00078836 -1.4161 -0.00070211 495.795991699083 110.97 0.22694 114.6 114.51 114.74 3.6326 47 27 3 0 0 0 0.82752 1 26955 26955 0.69038 0 1 73289 23175 12964 14470 14479 27381 27381 0.0818428863688041 LKVHSRPR 8 Unmodified _LKVHSRPR_ 0 0 0 L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|235|1|anti-sense L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|235|1|anti-sense L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|235|1|anti-sense MSMS UPN47_class_I_Rep_1 2 496.8223571777344 2 496.809242 991.603932 NaN NaN NaN NaN NaN NaN NaN 111.36 1 114.93 114.43 115.43 3.572 0 0 0 0.40746 1 27467 27467 0.69038 0 1 23176 14701 14471 14480 27382 27382 0.10779397248074929 LKVKRKMFSK 10 Unmodified _LKVKRKMFSK_ 0 0 0 REV__Tigger1_dup4453|chr5:143352551-143354664:-|1.744585362131287|0.0970569591578268|4.17|151.0|43|2|sense REV__Tigger1_dup4453|chr5:143352551-143354664:-|1.744585362131287|0.0970569591578268|4.17|151.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 632.9011840820312 2 632.899743 1263.78493 NaN NaN NaN NaN NaN NaN NaN 68.7 1 68.7 68.2 69.2 0 0 0 0 0.53105 1 15701 15701 1.1933 0 1 + 23177 32448 14472 14481 27383 27383 0.16359154509746077 LKVLKKFRP 9 Unmodified _LKVLKKFRP_ 0 0 0 REV__L1MDa_dup4553|chr10:35438612-35440349:-|1.4338259454787683|0.0616595605234066|4.54|150.0|35|2|sense REV__L1MDa_dup4553|chr10:35438612-35440349:-|1.4338259454787683|0.0616595605234066|4.54|150.0|35|2|sense MSMS UPN47_class_I_Rep_2 3 564.8819580078125 2 564.884419 1127.75428 NaN NaN NaN NaN NaN NaN NaN 110.09 1 113.62 113.12 114.12 3.5307 0 0 0 0.4007 1 26816 26816 0.52476 0.12405 1 + 23178 27527 14473 14482 27384 27384 0.19551744187015174 LKVLVPPNI 9 Unmodified _LKVLVPPNI_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MSMS UPN46_class_I_Rep_3 1 496.829345703125 2 496.828778 991.643003 NaN NaN NaN NaN NaN NaN NaN 12.099 1 12.099 11.599 12.599 0 0 0 0 0.4007 1 24 24 0.52476 0.52476 1 23179 3502;16708 14474 14483 27385 27385 0.1468468475906093 LKVLVRAA 8 Unmodified _LKVLVRAA_ 0 0 0 REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 435.3002014160156 2 435.300188 868.585822 0.15021 6.5388E-05 -0.15941 -6.9389E-05 -0.0091911 -4.0009E-06 435.30014705375555 62.838 0.20095 66.312 66.177 66.378 3.4738 18 11 2 0 0 0 0.82752 1 14088 14088 2.3027 0 1 302930 + 23180 22261 14475 14484 27386 27386 0.14627262273347696 LKVLVRAA 8 Unmodified _LKVLVRAA_ 0 0 0 REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF MSMS UPN48_class_I_Rep_2 6 435.2999572753906 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 65.77 1 69.256 68.756 69.756 3.4866 0 0 0 0.40625 1 14974 14974 2.3027 0 1 + 23181 22261 14475 14484 27387 27387 0.14627262273347696 LKVNSVNIY 9 Unmodified _LKVNSVNIY_ 0 0 0 HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|59|1|sense HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|59|1|sense HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|59|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.3031005859375 2 525.303124 1048.5917 0.24404 0.00012819 0.72289 0.00037974 0.96693 0.00050793 525.3034486297499 58.265 0.33904 61.431 61.33 61.669 3.1658 32 20 2 0 0 0 0.37599 1 13504 13504 9.3831 0 1 126370 23182 8102 14476 14485 27388 27388 0.06934315994362805 LKVPDWYGF 9 Unmodified _LKVPDWYGF_ 0 0 0 REV__ENSG00000155085|ENST00000424296|AK9 REV__ENSG00000155085|ENST00000424296|AK9 MULTI-MSMS UPN47_class_I_Rep_3 4 562.7919311523438 2 562.792392 1123.57023 0.14514 8.1683E-05 -1.2003 -0.0006755 -1.0551 -0.00059382 562.7918687402662 43.547 0.48669 46.789 46.679 47.166 3.2419 33 28 2 0 0 0 0.47197 1 9045 9045 3.5965 0.60125 1 69677 + 23183 19757 14477 14486 27389 27389 0.013389309656531623 LKVRPQQL 8 Unmodified _LKVRPQQL_ 0 0 0 CON__Q3T052;ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4 CON__Q3T052 CON__Q3T052 MULTI-MSMS UPN47_class_I_Rep_2 3 491.3138122558594 2 491.313826 980.613099 -0.10014 -4.9199E-05 0.03756 1.8454E-05 -0.062577 -3.0745E-05 491.31376583999923 24.107 1.0314 27.573 27.166 28.197 3.4655 201 89 3 0 0 0 0.82752 1 3222 3222 8.5933 1.304 1 295740 + 23184 654 14478 14487 27390 27390 0.12201745813740672 LKVTKKFRVV 10 Unmodified _LKVTKKFRVV_ 0 0 0 ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B MSMS UPN46_class_I_Rep_3 1 609.4094848632812 2 609.408258 1216.80196 NaN NaN NaN NaN NaN NaN NaN 108.58 1 108.58 108.08 109.08 0 0 0 0 0.53105 1 26563 26563 1.4819 1.0236 1 23185 3218 14479 14488 27391 27391 0.20223398387201996 LKVVIPPL 8 Unmodified _LKVVIPPL_ 0 0 0 REV__L1MEf_dup256|chr1:89644449-89645690:+|3.211585478357812|0.0277454638926172|6.85|151.0|55|1|anti-sense REV__L1MEf_dup256|chr1:89644449-89645690:+|3.211585478357812|0.0277454638926172|6.85|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_1 2 439.8062438964844 2 439.807314 877.600075 NaN NaN NaN NaN NaN NaN NaN 78.888 1 82.333 81.833 82.833 3.4456 0 0 0 0.40746 1 19631 19631 0.69038 0 1 + 23186 28622 14480 14489 27392 27392 0.156379147016537 LKWCLTFFG 9 Unmodified _LKWCLTFFG_ 0 0 0 LOR1-int_dup423|chr5:61442423-61443949:-|1.8422249516454732|0.0148475247035814|6.96|151.0|7|1|sense LOR1-int_dup423|chr5:61442423-61443949:-|1.8422249516454732|0.0148475247035814|6.96|151.0|7|1|sense LOR1-int_dup423|chr5:61442423-61443949:-|1.8422249516454732|0.0148475247035814|6.96|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 557.7933959960938 2 557.791338 1113.56812 NaN NaN NaN NaN NaN NaN NaN 43.324 1 46.835 46.335 47.335 3.5103 0 0 0 0.39428 1 8119 8119 2.0598 0 1 23187 15501 14481 14490 27393 27393 0.01588178956194497 LKWGGEMLKR 10 Unmodified _LKWGGEMLKR_ 0 0 0 L1MEd_dup10703|chr8:27358315-27359073:-|2.692311067653298|0.0029840575389896|9.82|151.0|15|2|sense L1MEd_dup10703|chr8:27358315-27359073:-|2.692311067653298|0.0029840575389896|9.82|151.0|15|2|sense L1MEd_dup10703|chr8:27358315-27359073:-|2.692311067653298|0.0029840575389896|9.82|151.0|15|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 406.2311706542969 3 406.565626 1216.67505 0.071497 2.9068E-05 -0.1248 -5.0739E-05 -0.053301 -2.167E-05 406.5657778483217 33.662 0.14852 37.322 37.27 37.418 3.6607 24 17 2 0 0 0 0.84575 1 5336 5336 1.7423 0 1 59140 23188 13160 14482 14491 27394 27394 0.07537729170553575 LKWGSDPLA 9 Unmodified _LKWGSDPLA_ 0 0 0 REV__MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|38|1|anti-sense REV__MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.7687683105469 2 493.768917 985.523281 0.093638 4.6235E-05 -0.23454 -0.00011581 -0.1409 -6.9572E-05 493.76878926086283 53.761 0.68014 57.288 57.066 57.746 3.5278 65 38 2 0 0 0 0.43153 1 12111 12111 6.2058 1.8765 1 96237 + 23189 31362 14483 14492 27395 27395 0.0299407141451411 LKWLEEHY 8 Unmodified _LKWLEEHY_ 0 0 0 REV__ENST00000502857.6_1_5:110002437-110003053:-|nuORF REV__ENST00000502857.6_1_5:110002437-110003053:-|nuORF MSMS UPN47_class_I_Rep_1 2 559.2882080078125 2 559.287474 1116.5604 NaN NaN NaN NaN NaN NaN NaN 15.233 1 18.73 18.23 19.23 3.4968 0 0 0 0.40746 1 765 765 0.69038 0 1 + 23190 20912 14484 14493 27396 27396 0.0067774296028346726 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 560.3403930664062 2 560.339313 1118.66407 0.43704 0.00024489 1.7551 0.00098343 2.1921 0.0012283 560.3402308402594 98.658 0.12189 98.658 98.599 98.721 0 17 14 2 0 0 0 0.82752 1 24030 24030 0.69038 0 1 107730 + 23191 23430 14485 14494 27397 27397 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 560.3400268554688 2 560.339313 1118.66407 0.43718 0.00024497 1.6353 0.00091632 2.0725 0.0011613 560.3401124555164 98.906 0.14202 98.906 98.819 98.961 0 22 16 2 0 0 0 0.82752 2 24064 24064;24099 0.69038 0 1 108190 + 23192 23430 14485 14494 27398;27399 27398 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.342041015625 2 560.339313 1118.66407 0.5114 0.00028656 1.7213 0.00096451 2.2327 0.0012511 560.3402649552604 94.511 0.18569 98.262 98.243 98.429 3.7508 40 25 2 0 0 0 0.82752 1 23503 23503 0.69038 0 1 221820 + 23193 23430 14485 14494 27400 27400 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_1 2 560.3399658203125 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 94.845 1 98.596 98.096 99.096 3.7508 0 0 0 0.40746 1 23554 23554 0.69038 0 1 + 23194 23430 14485 14494 27401 27401 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.340087890625 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 95.089 1 98.499 97.999 98.999 3.4095 0 0 0 0.40746 1 23646 23646 0.69038 0 1 + 23195 23430 14485 14494 27402 27402 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.3406982421875 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 95.715 1 99.125 98.625 99.625 3.4095 0 0 0 0.40746 1 23784 23784 0.69038 0 1 + 23196 23430 14485 14494 27403 27403 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.34033203125 2 560.339313 1118.66407 0.45325 0.00025397 1.9077 0.001069 2.3609 0.0013229 560.3403602716462 94.996 0.2226 98.613 98.52 98.743 3.6167 39 28 2 0 0 0 0.82752 1 22882 22882 0.69038 0 1 128810 + 23197 23430 14485 14494 27404 27404 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 560.3410034179688 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 90.586 1 94.341 93.841 94.841 3.7554 0 0 0 0.40746 1 21579 21579 0.69038 0 1 + 23198 23430 14485 14494 27405 27405 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.341552734375 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 94.687 1 98.589 98.089 99.089 3.9016 0 0 0 0.40746 1 22440 22440 0.69038 0 1 + 23199 23430 14485 14494 27406 27406 0.10948694858598174 LKWLKWVF 8 Unmodified _LKWLKWVF_ 0 0 0 REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense REV__HAL1_dup6620|chr4:139679915-139681021:-|2.049974582473045|0.0338126966846776|5.92|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3407592773438 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 94.864 1 98.765 98.265 99.265 3.9016 0 0 0 0.40746 1 22481 22481 0.69038 0 1 + 23200 23430 14485 14494 27407 27407 0.10948694858598174 LKWLLFILFLV 11 Unmodified _LKWLLFILFLV_ 0 0 0 REV__nc|ENSG00000163870|Q86W33-2|TPRA1 REV__nc|ENSG00000163870|Q86W33-2|TPRA1 MSMS UPN48_class_I_Rep_1 5 468.9710998535156 3 468.972099 1403.89447 NaN NaN NaN NaN NaN NaN NaN 48.959 1 52.483 51.983 52.983 3.5239 0 0 0 0.38417 1 9842 9842 0.45452 0 1 + 23201 20012 14486 14495 27408 27408 0.20867483400706988 LKWNIKLWH 9 Unmodified _LKWNIKLWH_ 0 0 0 REV__MER5C_dup338|chr3:182910813-182911116:-|1.200911880776263|0.0446103445421319|4.75|151.0|9|2|sense REV__MER5C_dup338|chr3:182910813-182911116:-|1.200911880776263|0.0446103445421319|4.75|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 619.3632202148438 2 619.36385 1236.71315 NaN NaN NaN NaN NaN NaN NaN 75.957 1 79.457 78.957 79.957 3.4996 0 0 0 0.4007 1 18025 18025 0.52476 0 1 + 23202 31478 14487 14496 27409 27409 0.10425983147547413 LKWQFPFY 8 Unmodified _LKWQFPFY_ 0 0 0 REV__nc|ENSG00000165102|Q68CP4|HGSNAT REV__nc|ENSG00000165102|Q68CP4|HGSNAT MSMS UPN48_class_I_Rep_2 6 564.5462646484375 2 564.797478 1127.5804 NaN NaN NaN NaN NaN NaN NaN 25.256 1 28.892 28.392 29.392 3.6363 0 0 0 0.40738 1 3053 3053 0.79363 0 1 + 23203 20103 14488 14497 27410 27410 0.02171538690890884 LKWVPDPYA 9 Unmodified _LKWVPDPYA_ 0 0 0 L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|71|2|sense L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|71|2|sense L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|71|2|sense MSMS UPN48_class_I_Rep_1 5 544.7904663085938 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 24.984 1 28.55 28.05 29.05 3.5667 0 0 0 0.39518 1 2841 2841 1.8442 0.19162 1 23204 14658 14489 14498 27411 27411 0.029949309656331025 LKYECSNKL 9 Unmodified _LKYECSNKL_ 0 0 0 REV__ENSG00000132205|ENST00000254528|EMILIN2 REV__ENSG00000132205|ENST00000254528|EMILIN2 MULTI-MSMS UPN48_class_I_Rep_1 5 549.2863159179688 2 549.286617 1096.55868 0.49724 0.00027313 -1.5677 -0.0008611 -1.0704 -0.00058797 549.28573901992 38.927 0.684 42.432 42.205 42.889 3.5048 75 60 2 0 0 0 0.38714 1 6783 6783 8.7454 1.4562 1 143270 + 23205 19002 14490 14499 27412 27412 0.014263658800018675 LKYKDPTSY 9 Unmodified _LKYKDPTSY_ 0 0 0 REV__nc|ENSG00000066827|Q9P243-3|ZFAT REV__nc|ENSG00000066827|Q9P243-3|ZFAT MSMS UPN47_class_I_Rep_1 2 557.7626342773438 2 557.792589 1113.57063 NaN NaN NaN NaN NaN NaN NaN 29.261 1 33.018 32.518 33.518 3.7578 0 0 0 0.39518 1 4623 4623 1.8442 0.36234 1 + 23206 17770 14491 14500 27413 27413 0.01838305894852965 LKYNEKLL 8 Unmodified _LKYNEKLL_ 0 0 0 REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.8076171875 2 510.808042 1019.60153 0.36612 0.00018702 -0.13696 -6.996E-05 0.22916 0.00011706 510.8078475546205 59.092 0.74391 62.572 62.226 62.97 3.4801 78 46 2 0 0 0 0.82752 1 12911 12911 10.074 0 1 188990 + 23207 30178 14492 14501 27414 27414 0.09251503999769284 LKYNEKLL 8 Unmodified _LKYNEKLL_ 0 0 0 REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.8082275390625 2 510.808042 1019.60153 0.40571 0.00020724 -0.25295 -0.00012921 0.15276 7.8033E-05 510.80780508807743 58.916 0.74771 62.415 62.105 62.853 3.4987 75 45 2 0 0 0 0.82752 1 12940 12940 10.074 0 1 224960 + 23208 30178 14492 14501 27415 27415 0.09251503999769284 LKYNEKLL 8 Unmodified _LKYNEKLL_ 0 0 0 REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.8078308105469 2 510.808042 1019.60153 0.24499 0.00012514 -0.069426 -3.5463E-05 0.17556 8.968E-05 510.80786859879163 58.772 0.69455 62.295 62.027 62.722 3.5231 77 45 2 0 0 0 0.82752 1 12777 12777 18.146 3.3081 1 196390 + 23209 30178 14492 14501 27416 27416 0.09251503999769284 LKYTKSFLLR 10 Unmodified _LKYTKSFLLR_ 0 0 0 REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF REV__ENST00000461132.1_1_9:94871020-94877616:-|nuORF MSMS UPN46_class_I_Rep_3 1 423.59765625 3 423.595691 1267.76524 NaN NaN NaN NaN NaN NaN NaN 102.77 1 102.77 102.27 103.27 0 0 0 0 0.53105 1 25080 25080 0.56317 0 1 + 23210 18010 14493 14502 27417 27417 0.14207101770671215 LKYYYWAV 8 Unmodified _LKYYYWAV_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS UPN47_class_I_Rep_1 2 553.2890625 2 553.289485 1104.56442 -0.013486 -7.4617E-06 -0.95725 -0.00052964 -0.97074 -0.0005371 553.2890217986828 36.493 0.83889 40.162 39.714 40.553 3.6692 101 66 2 0 0 0 0.82752 1 6931 6931 2.3027 0.4585 1 115670 23211 5441 14494 14503 27418 27418 0.016318324539724927 LLAAKKTH 8 Unmodified _LLAAKKTH_ 0 0 0 ENSG00000143365|ENST00000318247|RORC ENSG00000143365|ENST00000318247|RORC ENSG00000143365|ENST00000318247|RORC MSMS UPN48_class_I_Rep_2 6 441.2974853515625 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 44.66 1 48.421 47.921 48.921 3.7617 0 0 0 0.40625 1 8536 8536 2.3027 0 1 23212 3291 14495 14504 27419 27419 0.10438385376664883 LLAAKKTH 8 Unmodified _LLAAKKTH_ 0 0 0 ENSG00000143365|ENST00000318247|RORC ENSG00000143365|ENST00000318247|RORC ENSG00000143365|ENST00000318247|RORC MSMS UPN48_class_I_Rep_3 7 441.2974548339844 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 44.891 1 48.528 48.028 49.028 3.6372 0 0 0 0.40753 1 8533 8533 0.6015 0 1 23213 3291 14495 14504 27420 27420 0.10438385376664883 LLAAPLLSST 10 Unmodified _LLAAPLLSST_ 0 0 0 REV__ENST00000555222.5_1_12:57492796-57493045:-|nuORF REV__ENST00000555222.5_1_12:57492796-57493045:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.2988586425781 2 493.30005 984.585547 0.29716 0.00014659 -1.3917 -0.00068652 -1.0945 -0.00053993 493.29944993970577 50.541 0.57019 53.884 53.661 54.232 3.3431 48 29 2 0 0 0 0.32062 1 11131 11131 26.884 1.4843 1 96192 + 23214 22987 14496 14505 27421 27421 0.09263797762855575 LLAARKMQVK 10 Unmodified _LLAARKMQVK_ 0 0 0 L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|8|2|sense L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|8|2|sense L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.3657836914062 2 579.362993 1156.71143 0.48555 0.00028131 1.1359 0.00065808 1.6214 0.00093939 579.3643226227822 109.24 0.40254 112.91 112.8 113.2 3.6751 123 54 3 0 0 0 0.54466 1 25966 25966 6.2058 2.2614 1 3072300 23215 12736 14497 14506 27422 27422 0.13934606067277855 LLAASLSPTL 10 Unmodified _LLAASLSPTL_ 0 0 0 nc|ENSG00000204396|Q9Y334-2|VWA7;ENSG00000204396|ENST00000375688|VWA7 nc|ENSG00000204396|Q9Y334-2|VWA7 nc|ENSG00000204396|Q9Y334-2|VWA7 MULTI-MSMS UPN47_class_I_Rep_2 3 493.30047607421875 2 493.30005 984.585547 0.29716 0.00014659 -1.3917 -0.00068652 -1.0945 -0.00053993 493.29944993970577 50.541 0.57019 53.884 53.661 54.232 3.3431 48 29 2 0 0 0 0.47413 1 11176 11176 13.906 0.86358 1 96192 23216 5523 14498 14507 27423 27423 0.09263797762855575 LLACCLPV 8 Unmodified _LLACCLPV_ 0 0 0 nc|ENSG00000160310|P55345-2|PRMT2 nc|ENSG00000160310|P55345-2|PRMT2 nc|ENSG00000160310|P55345-2|PRMT2 MSMS UPN47_class_I_Rep_1 2 416.2275390625 2 416.226985 830.439417 NaN NaN NaN NaN NaN NaN NaN 25.904 1 29.666 29.166 30.166 3.7624 0 0 0 0.40738 1 3626 3626 0.79363 0 1 23217 16728 14499 14508 27424 27424 0.017415007216186495 LLADPLDLL 9 Unmodified _LLADPLDLL_ 0 0 0 REV__ENSG00000084092|ENST00000264230|NOA1 REV__ENSG00000084092|ENST00000264230|NOA1 MSMS UPN47_class_I_Rep_1 2 491.796142578125 2 491.794601 981.574648 NaN NaN NaN NaN NaN NaN NaN 46.3 1 50 49.5 50.5 3.6999 0 0 0 0.38478 1 9808 9808 4.3292 0 1 + 23218 17940 14500 14509 27425 27425 0.08312395388577443 LLADSQYQL 9 Unmodified _LLADSQYQL_ 0 0 0 MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|7|2|sense MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|7|2|sense MLT1G1_dup3552|chr22:40134900-40135313:-|1.4769495174179343|0.0132751045372945|6.8|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.7769165039062 2 525.776939 1049.53933 0.306 0.00016089 0.017245 9.0669E-06 0.32324 0.00016995 525.7769443691409 64.316 0.44183 67.672 67.408 67.85 3.3557 77 45 2 0 0 0 0.24936 1 15241 15241 17.113 0 1 135940 23219 16414 14501 14510 27426 27426 0.016537328607682866 LLAFQFWW 8 Unmodified _LLAFQFWW_ 0 0 0 L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|84|3|anti-sense L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|84|3|anti-sense L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_2 6 555.7908325195312 2 555.792195 1109.56984 NaN NaN NaN NaN NaN NaN NaN 112.01 1 115.67 115.17 116.17 3.6666 0 0 0 0.40738 1 26662 26662 0.79363 0 1 23220 11829 14502 14511 27427 27427 0.019435560364399862 LLAFWRML 8 Unmodified _LLAFWRML_ 0 0 0 nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH nc|ENSG00000080031|Q9HD43-3|PTPRH nc|ENSG00000080031|Q9HD43-3|PTPRH MSMS UPN46_class_I_Rep_3 1 525.3030395507812 2 525.301873 1048.58919 NaN NaN NaN NaN NaN NaN NaN 80.066 1 80.066 79.566 80.566 0 0 0 0 0.40604 1 18841 18841 2.5775 0 1 23221 1197 14503 14512 27428 27428 0.06684189055727074 LLAGITGVVI 10 Unmodified _LLAGITGVVI_ 0 0 0 ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB MULTI-MSMS UPN48_class_I_Rep_2 6 478.3125915527344 2 478.312961 954.611368 0.28613 0.00013686 -0.30337 -0.00014511 -0.017244 -8.2479E-06 478.31272853538 61.646 0.65652 65.119 64.816 65.472 3.4738 65 52 2 0 0 0 0.56078 1 13641 13641 3.2813 0 1 94931 23222 4162 14504 14513 27429 27429 0.13224692005132965 LLAGLPLLA 9 Unmodified _LLAGLPLLA_ 0 0 0 ENSG00000184221|ENST00000382348|OLIG1 ENSG00000184221|ENST00000382348|OLIG1 ENSG00000184221|ENST00000382348|OLIG1 MULTI-MSMS UPN46_class_I_Rep_3 1 440.7994689941406 2 440.796946 879.57934 0.1616 7.1232E-05 2.2972 0.0010126 2.4588 0.0010838 440.79931698756405 87.848 0.26615 87.848 87.693 87.959 0 46 30 2 0 0 0 0.48414 1 21082 21082 2.3027 0 1 165200 23223 5041 14505 14514 27430 27430 0.1347332432200119 LLAGSIVALE 10 Unmodified _LLAGSIVALE_ 0 0 0 REV__ENSG00000197496|ENST00000359271|SLC2A10 REV__ENSG00000197496|ENST00000359271|SLC2A10 MULTI-MSMS UPN47_class_I_Rep_3 4 493.298583984375 2 493.30005 984.585547 0.28744 0.00014179 -1.5002 -0.00074005 -1.2128 -0.00059826 493.2992907669335 50.817 0.66128 54.033 53.656 54.317 3.2163 54 34 2 0 0 0 0.35076 1 11275 11275 24.021 3.5669 1 92570 + 23224 21086 14506 14515 27431 27431 0.09263797762866943 LLAIAQQHS 9 Unmodified _LLAIAQQHS_ 0 0 0 REV__nc|ENSG00000132849|Q8NI35-4|PATJ REV__nc|ENSG00000132849|Q8NI35-4|PATJ MSMS UPN48_class_I_Rep_1 5 490.7813720703125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 33.627 1 37.147 36.647 37.647 3.5201 0 0 0 0.40038 1 5271 5271 0.6015 0 1 + 23225 19036 14507 14516 27432 27432 0.054488761630864246 LLAITTKTR 9 Unmodified _LLAITTKTR_ 0 0 0 REV__nc|ENSG00000172554|Q9NY99-2|SNTG2 REV__nc|ENSG00000172554|Q9NY99-2|SNTG2 MSMS UPN47_class_I_Rep_3 4 508.82806396484375 2 508.826766 1015.63898 NaN NaN NaN NaN NaN NaN NaN 89.548 1 92.941 92.441 93.441 3.3931 0 0 0 0.40038 1 22448 22448 0.6015 0 1 + 23226 20453 14508 14517 27433 27433 0.1317859526537859 LLALGADVTL 10 Unmodified _LLALGADVTL_ 0 0 0 ENSG00000105270|ENST00000360535|CLIP3 ENSG00000105270|ENST00000360535|CLIP3 ENSG00000105270|ENST00000360535|CLIP3 MULTI-MSMS UPN47_class_I_Rep_3 4 493.3000183105469 2 493.30005 984.585547 0.28744 0.00014179 -1.5002 -0.00074005 -1.2128 -0.00059826 493.2992907669335 50.817 0.66128 54.033 53.656 54.317 3.2163 54 34 2 0 0 0 0.35076 1 11198 11198 24.021 0 1 92570 23227 1725 14509 14518 27434 27434 0.09263797762855575 LLALHHVK 8 Unmodified _LLALHHVK_ 0 0 0 REV__MER50C_dup13|chr2:216114477-216115267:+|1.009167804325468|0.1303985614156744|2.95|151.0|32|1|anti-sense REV__MER50C_dup13|chr2:216114477-216115267:+|1.009167804325468|0.1303985614156744|2.95|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 465.7960510253906 2 465.797812 929.581071 NaN NaN NaN NaN NaN NaN NaN 95.666 1 95.666 95.166 96.166 0 0 0 0 0.40581 1 23238 23238 2.8892 0 1 + 23228 31382 14510 14519 27435 27435 0.11346378130610901 LLALMKLPTIR 11 Unmodified _LLALMKLPTIR_ 0 0 0 REV__Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|22|2|sense REV__Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|22|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3776245117188 2 634.909776 1267.805 0.51361 0.0003261 -2.0575 -0.0013063 -1.5439 -0.00098023 634.908222749321 104.9 0.13983 108.44 108.38 108.52 3.5308 25 21 2 0 0 0 22.551 1 25693 25693 2.9952 1.5133 1 6663300 + 23229 32680 14511 14520 27436 27436 0.18180905449708007 LLAPLHHPK 9 Unmodified _LLAPLHHPK_ 0 0 0 REV__ENST00000370978.8_1_X:129362982-129363054:-|nuORF REV__ENST00000370978.8_1_X:129362982-129363054:-|nuORF MSMS UPN47_class_I_Rep_2 3 513.3179931640625 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 41.14 1 44.505 44.005 45.005 3.3655 0 0 0 0.39428 1 8261 8261 2.0598 0.40713 1 + 23230 21956 14512 14521 27437 27437 0.10686049676360199 LLAPLHHPK 9 Unmodified _LLAPLHHPK_ 0 0 0 REV__ENST00000370978.8_1_X:129362982-129363054:-|nuORF REV__ENST00000370978.8_1_X:129362982-129363054:-|nuORF MSMS UPN48_class_I_Rep_2 6 513.3173217773438 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 56.923 1 60.456 59.956 60.956 3.5333 0 0 0 0.39428 1 12266 12266 2.0598 0.40713 1 + 23231 21956 14512 14521 27438 27438 0.10686049676360199 LLAPLHHPK 9 Unmodified _LLAPLHHPK_ 0 0 0 REV__ENST00000370978.8_1_X:129362982-129363054:-|nuORF REV__ENST00000370978.8_1_X:129362982-129363054:-|nuORF MSMS UPN48_class_I_Rep_3 7 513.3169555664062 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 54.229 1 57.798 57.298 58.298 3.5694 0 0 0 0.38478 1 11380 11380 4.3292 2.0265 1 + 23232 21956 14512 14521 27439 27439 0.10686049676360199 LLAPLLWERT 10 Unmodified _LLAPLLWERT_ 0 0 0 ENST00000594723.1_1_19:49138672-49140251:-|nuORF;ENSG00000105516|ENST00000222122|DBP ENST00000594723.1_1_19:49138672-49140251:-|nuORF ENST00000594723.1_1_19:49138672-49140251:-|nuORF MSMS UPN46_class_I_Rep_3 1 606.361328125 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 41.18 1 41.18 40.68 41.68 0 0 0 0 0.53105 1 8049 8049 0.35063 0.081612 1 23233 1742 14513 14522 27440 27440 0.11046839845221257 LLAQIALAIR 10 Unmodified _LLAQIALAIR_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|308|2|anti-sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|308|2|anti-sense MSMS UPN47_class_I_Rep_2 3 541.35791015625 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 113.55 1 117.06 116.56 117.56 3.5109 0 0 0 0.53105 1 27622 27622 0 0 1 + 23234 29231 14514 14523 27441 27441 0.16479161053371172 LLAQIALAIR 10 Unmodified _LLAQIALAIR_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|308|2|anti-sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|308|2|anti-sense MSMS UPN47_class_I_Rep_3 4 541.35791015625 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 114.77 1 118.25 117.75 118.75 3.4802 0 0 0 0.53105 1 28197 28197 0 0 1 + 23235 29231 14514 14523 27442 27442 0.16479161053371172 LLAQIALAIR 10 Unmodified _LLAQIALAIR_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|308|2|anti-sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|308|2|anti-sense MSMS UPN47_class_I_Rep_3 4 541.7821044921875 2 541.358234 1080.70191 NaN NaN NaN NaN NaN NaN NaN 117.96 1 121.39 120.89 121.89 3.4238 0 0 0 0.53105 1 29079 29079 0 0 1 + 23236 29231 14514 14523 27443 27443 0.16479161053371172 LLARAWAPV 9 Unmodified _LLARAWAPV_ 0 0 0 REV__ENSG00000129749|ENST00000250699|CHRNA10 REV__ENSG00000129749|ENST00000250699|CHRNA10 MULTI-MSMS UPN47_class_I_Rep_2 3 498.8038024902344 2 498.803094 995.591636 0.26675 0.00013305 1.3432 0.00067 1.61 0.00080306 498.80370222314696 50.93 0.51921 54.269 54.047 54.566 3.3386 44 27 3 0 0 0 0.48846 1 11296 11296 1.8442 1.0506 1 158650 + 23237 18927 14515 14524 27444 27444 0.09366360785020333 LLARAWAPV 9 Unmodified _LLARAWAPV_ 0 0 0 REV__ENSG00000129749|ENST00000250699|CHRNA10 REV__ENSG00000129749|ENST00000250699|CHRNA10 MSMS UPN47_class_I_Rep_2 3 498.8036193847656 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 50.489 1 53.832 53.332 54.332 3.3431 0 0 0 0.39518 1 11102 11102 1.8442 1.0506 1 + 23238 18927 14515 14524 27445 27445 0.09366360785020333 LLARMAKLKN 10 Unmodified _LLARMAKLKN_ 0 0 0 REV__ENST00000565298.5_1_16:1560947-1574065:-|nuORF REV__ENST00000565298.5_1_16:1560947-1574065:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 579.3530883789062 2 579.362993 1156.71143 0.49204 0.00028507 0.85658 0.00049627 1.3486 0.00078134 579.3643605084915 109.29 0.53153 112.89 112.77 113.3 3.6046 137 66 3 0 0 0 0.56033 1 26943 26943 3.5965 0 1 3291700 + 23239 20931 14516 14525 27446 27446 0.13934606067277855 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MSMS UPN48_class_I_Rep_1 5 491.7961120605469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.448 1 63.922 63.422 64.422 3.4737 0 0 0 0.4044 1 13372 13372 4.756 0.81161 1 + 23240 20466 14517 14526 27447 27447 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MSMS UPN48_class_I_Rep_1 5 491.79730224609375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.605 1 64.078 63.578 64.578 3.4737 0 0 0 0.38547 1 13420 13420 13.508 1.8676 1 + 23241 20466 14517 14526 27448 27448 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MSMS UPN48_class_I_Rep_1 5 491.7886657714844 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.757 1 64.231 63.731 64.731 3.4737 0 0 0 0.38547 1 13467 13467 13.508 0.97634 1 + 23242 20466 14517 14526 27449 27449 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-MSMS UPN48_class_I_Rep_2 6 491.7958984375 2 491.795269 981.575986 0.33595 0.00016522 1.0177 0.00050049 1.3536 0.00066571 491.7957927281124 60.565 0.14419 64.043 63.922 64.066 3.4785 17 11 2 0 0 0 0.82752 1 13377 13377 18.135 3.5533 1 135300 + 23243 20466 14517 14526 27450 27450 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-MSMS UPN48_class_I_Rep_2 6 492.29852294921875 2 491.795269 981.575986 0.33194 0.00016325 2.0487 0.0010075 2.3806 0.0011708 491.79662556288713 60.924 0.18109 64.403 64.27 64.451 3.4785 26 16 2 0 0 0 0.82752 1 13471 13471 18.135 2.2878 1 104570 + 23244 20466 14517 14526 27451 27451 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MSMS UPN48_class_I_Rep_2 6 491.7964782714844 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 61.176 1 64.655 64.155 65.155 3.4785 0 0 0 0.38547 1 13568 13568 13.508 1.8676 1 + 23245 20466 14517 14526 27452 27452 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-SECPEP UPN48_class_I_Rep_2 6 491.57830810546875 2 491.795269 981.575986 0.33595 0.00016522 1.0177 0.00050049 1.3536 0.00066571 491.7957927281124 60.565 0.14419 64.043 63.922 64.066 3.4785 17 11 2 0 0 0 0.72333 1 13355 13355 4.756 0.81161 1 135300 + 23246 20466 14517 14526 27453 27453 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-MSMS UPN48_class_I_Rep_3 7 491.7967834472656 2 491.795269 981.575986 0.23423 0.00011519 1.9171 0.00094281 2.1513 0.001058 491.7962971198879 60.457 0.10983 63.974 63.901 64.011 3.5169 10 8 2 0 0 0 0.82752 1 13269 13269 13.508 4.1604 1 122300 + 23247 20466 14517 14526 27454 27454 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MSMS UPN48_class_I_Rep_3 7 491.7969970703125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.765 1 64.278 63.778 64.778 3.5129 0 0 0 0.38547 1 13374 13374 13.508 1.8676 1 + 23248 20466 14517 14526 27455 27455 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MSMS UPN48_class_I_Rep_3 7 491.795654296875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.918 1 64.431 63.931 64.931 3.5128 0 0 0 0.38547 1 13420 13420 13.508 1.8676 1 + 23249 20466 14517 14526 27456 27456 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-SECPEP UPN48_class_I_Rep_3 7 491.7969970703125 2 491.795269 981.575986 0.24121 0.00011863 1.5154 0.00074526 1.7566 0.00086389 491.79624451538103 60.839 0.34813 64.351 64.195 64.543 3.5128 42 34 2 0 0 0 0.72333 1 13374 13374 13.508 13.508 1 151320 + 23250 20466 14517 14526 27457 27457 0.08446074267976655 LLARNLPW 8 Unmodified _LLARNLPW_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-MATCH UPN46_class_I_Rep_3 1 2 491.795269 981.575986 0.2341 0.00011513 1.75 0.00086065 1.9841 0.00097578 491.79600110193223 64.18 0.072426 64.18 64.121 64.193 0 -0.011418 0.00042858 NaN 13.508 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 107900 + 23251 20466 14517 14526 0.08446074267976655 LLARPPHAQRT 11 Unmodified _LLARPPHAQRT_ 0 0 0 REV__ENST00000400762.7_1_4:1198785-1202445:-|nuORF REV__ENST00000400762.7_1_4:1198785-1202445:-|nuORF MSMS UPN47_class_I_Rep_3 4 630.3696899414062 2 630.370195 1258.72584 NaN NaN NaN NaN NaN NaN NaN 37.816 1 41.057 40.557 41.557 3.2414 0 0 0 0.38417 1 7293 7293 1.0715 0.5467 1 + 23252 22156 14518 14527 27458 27458 0.10682394539776396 LLASLTRE 8 Unmodified _LLASLTRE_ 0 0 0 REV__ENST00000554514.1_1_14:21549058-21555515:+|nuORF REV__ENST00000554514.1_1_14:21549058-21555515:+|nuORF MSMS UPN47_class_I_Rep_3 4 451.7684020996094 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 20.253 1 23.603 23.103 24.103 3.3496 0 0 0 0.40643 1 2054 2054 2.0598 0 1 + 23253 20135 14519 14528 27459 27459 0.0685807141450141 LLASLVEQV 9 Unmodified _LLASLVEQV_ 0 0 0 REV__nc|ENSG00000137098|Q99932-2|SPAG8 REV__nc|ENSG00000137098|Q99932-2|SPAG8 MULTI-MSMS UPN47_class_I_Rep_1 2 486.2921447753906 2 486.292225 970.569897 0.12078 5.8734E-05 -0.3037 -0.00014769 -0.18292 -8.8951E-05 486.2919261218983 71.261 0.56839 74.636 74.44 75.008 3.3751 73 46 2 0 0 0 0.23293 1 17415 17415 18.146 0 1 165320 + 23254 31990 14520 14529 27460 27460 0.08343511245800528 LLAYYINTI 9 Unmodified _LLAYYINTI_ 0 0 0 L1ME2_dup679|chr1:148130140-148130623:-|1.912129274130156|0.2216343220152172|3.11|151.0|18|3|sense L1ME2_dup679|chr1:148130140-148130623:-|1.912129274130156|0.2216343220152172|3.11|151.0|18|3|sense L1ME2_dup679|chr1:148130140-148130623:-|1.912129274130156|0.2216343220152172|3.11|151.0|18|3|sense MSMS UPN47_class_I_Rep_1 2 542.3097534179688 2 542.307875 1082.6012 NaN NaN NaN NaN NaN NaN NaN 71.969 1 75.344 74.844 75.844 3.3751 0 0 0 0.38478 1 17580 17580 4.3292 0.38484 1 23255 12514 14521 14530 27461 27461 0.06320084279923321 LLCEYVVHF 9 Unmodified _LLCEYVVHF_ 0 0 0 L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|30|1|anti-sense L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|30|1|anti-sense L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_2 6 561.7874145507812 2 561.786253 1121.55795 NaN NaN NaN NaN NaN NaN NaN 55.172 1 58.728 58.228 59.228 3.5559 0 0 0 0.35339 1 11733 11733 7.9102 0 1 23256 12526 14522 14531 27462 27462 0.0020357123096346186 LLCFFFAY 8 Unmodified _LLCFFFAY_ 0 0 0 L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|25|1|anti-sense L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|25|1|anti-sense L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|25|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.7562866210938 2 512.254057 1022.49356 0.028302 1.4498E-05 0.0038359 1.9649E-06 0.032138 1.6463E-05 512.2540504059606 47.414 0.97311 51.109 50.685 51.659 3.6951 154 86 2 0 0 0 0.82752 1 10238 10238 6.3541 0 1 444680 23257 12887 14523 14532 27463 27463 -0.016785838551868437 LLCITKRVWI 10 Unmodified _LLCITKRVWI_ 0 0 0 REV__L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|50|3|anti-sense REV__L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_3 4 622.8795166015625 2 622.881019 1243.74748 NaN NaN NaN NaN NaN NaN NaN 108.34 1 111.87 111.37 112.37 3.5382 0 0 0 0.53105 1 26510 26510 5.7319 0 1 + 23258 25804 14524 14533 27464 27464 0.13536063244146135 LLCLAESLI 9 Unmodified _LLCLAESLI_ 0 0 0 REV__L1MB7_dup7207|chr5:179952213-179954726:+|1.5524902454483147|0.0217576330848255|6.16|149.0|111|1|anti-sense REV__L1MB7_dup7207|chr5:179952213-179954726:+|1.5524902454483147|0.0217576330848255|6.16|149.0|111|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.7835388183594 2 487.783179 973.551804 0.18744 9.1431E-05 -0.090145 -4.3971E-05 0.097297 4.746E-05 487.78299349156316 81.76 0.57687 85.272 85.051 85.628 3.5122 100 64 2 0 0 0 0.40174 1 20473 20473 7.9102 0.62092 1 143370 + 23259 26302 14525 14534 27465 27465 0.06397052999443531 LLCLPYLLA 9 Unmodified _LLCLPYLLA_ 0 0 0 L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|91|2|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|91|2|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|91|2|anti-sense MSMS UPN46_class_I_Rep_3 1 509.8041076660156 2 509.803914 1017.59328 NaN NaN NaN NaN NaN NaN NaN 82.34 1 82.34 81.84 82.84 0 0 0 0 0.39326 1 19500 19500 2.3027 0 1 23260 11742 14526 14535 27466 27466 0.08518233758775295 LLCLPYLLA 9 Unmodified _LLCLPYLLA_ 0 0 0 L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|91|2|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|91|2|anti-sense L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|91|2|anti-sense MSMS UPN47_class_I_Rep_2 3 509.8034362792969 2 509.803914 1017.59328 NaN NaN NaN NaN NaN NaN NaN 75.844 1 79.165 78.665 79.665 3.3216 0 0 0 0.39326 1 18748 18748 2.3027 0 1 23261 11742 14526 14535 27467 27467 0.08518233758775295 LLCNPPSPEL 10 Unmodified _LLCNPPSPEL_ 0 0 0 L1MB3_dup12559|chr13:50053336-50054297:-|3.468787714727966|0.1095416617541775|4.98|151.0|57|3|anti-sense L1MB3_dup12559|chr13:50053336-50054297:-|3.468787714727966|0.1095416617541775|4.98|151.0|57|3|anti-sense L1MB3_dup12559|chr13:50053336-50054297:-|3.468787714727966|0.1095416617541775|4.98|151.0|57|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.7808837890625 2 541.781167 1081.54778 0.42273 0.00022902 0.15149 8.2072E-05 0.57421 0.0003111 541.7811605865736 61.88 0.47366 65.248 64.948 65.421 3.3681 45 34 2 0 0 0 0.56033 1 14529 14529 3.5965 1.019 1 79748 23262 10332 14527 14536 27468 27468 0.010269635057284177 LLCPELETTF 10 Unmodified _LLCPELETTF_ 0 0 0 REV__HAL1_dup4588|chr3:58381268-58381820:+|1.0969861595837391|0.0121942684993006|6.49|151.0|36|3|anti-sense REV__HAL1_dup4588|chr3:58381268-58381820:+|1.0969861595837391|0.0121942684993006|6.49|151.0|36|3|anti-sense MSMS UPN47_class_I_Rep_2 3 583.2974243164062 2 583.294107 1164.57366 NaN NaN NaN NaN NaN NaN NaN 41.643 1 45.008 44.508 45.508 3.3655 0 0 0 0.53105 1 8411 8411 5.7319 0.43497 1 + 23263 23427 14528 14537 27469 27469 -0.0020418704266376153 LLCQINYKS 9 Unmodified _LLCQINYKS_ 0 0 0 REV__MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|19|3|anti-sense REV__MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_3 4 541.2890625 2 541.289159 1080.56377 NaN NaN NaN NaN NaN NaN NaN 57.729 1 60.897 60.397 61.397 3.1681 0 0 0 0.39518 1 13361 13361 1.8442 0 1 + 23264 31340 14529 14538 27470 27470 0.026706697426106984 LLCSHVEQRPD 11 Unmodified _LLCSHVEQRPD_ 0 0 0 REV__ENST00000569146.1_1_16:81726864-81730296:+|nuORF REV__ENST00000569146.1_1_16:81726864-81730296:+|nuORF MSMS UPN47_class_I_Rep_2 3 432.8851318359375 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 106.12 1 109.66 109.16 110.16 3.5345 0 0 0 0.38417 1 25716 25716 0.36667 0 1 + 23265 19718 14530 14539 27471 27471 -0.006769608023205365 LLCSHVEQRPD 11 Unmodified _LLCSHVEQRPD_ 0 0 0 REV__ENST00000569146.1_1_16:81726864-81730296:+|nuORF REV__ENST00000569146.1_1_16:81726864-81730296:+|nuORF MSMS UPN47_class_I_Rep_2 3 432.8849792480469 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 106.31 1 109.84 109.34 110.34 3.5345 0 0 0 0.38417 1 25754 25754 0.36667 0.20735 1 + 23266 19718 14530 14539 27472 27472 -0.006769608023205365 LLCTSDKNSSY 11 Unmodified _LLCTSDKNSSY_ 0 0 0 REV__ENST00000378062.5_1_X:43808665-43809031:-|nuORF REV__ENST00000378062.5_1_X:43808665-43809031:-|nuORF MSMS UPN47_class_I_Rep_2 3 615.787109375 2 615.787178 1229.5598 NaN NaN NaN NaN NaN NaN NaN 50.376 1 53.719 53.219 54.219 3.3431 0 0 0 0.38417 1 11067 11067 2.4985 0.43874 1 + 23267 22026 14531 14540 27473 27473 -0.04579464541734524 LLCYLHMKP 9 Unmodified _LLCYLHMKP_ 0 0 0 REV__L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|104|2|anti-sense REV__L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|104|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 559.3115234375 2 559.298473 1116.58239 0.26855 0.0001502 1.4101 0.00078869 1.6787 0.00093889 559.3000437686757 53.561 0.060932 57.145 57.107 57.167 3.5836 5 3 2 0 0 0 0.12422 1 11183 11183 2.3027 0 1 36214 + 23268 26184 14532 14541 27474 27474 0.028765081128312886 LLDDHVHC 8 Unmodified _LLDDHVHC_ 0 0 0 Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|81|2|anti-sense Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|81|2|anti-sense Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|81|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.2213439941406 2 476.221277 950.428001 0.20801 9.9059E-05 0.47414 0.0002258 0.68215 0.00032485 476.2212588956692 69.491 0.64519 69.491 69.128 69.773 0 150 70 4 0 0 0 0.82752 2 15927 15891;15927 9.3474 9.3474 1 456430 23269 33132 14533 14542 27475;27476 27476 -0.04919605048166886 LLDDVQHYGL 10 Unmodified _LLDDVQHYGL_ 0 0 0 REV__L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|16|2|sense REV__L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 586.8020629882812 2 586.800946 1171.58734 NaN NaN NaN NaN NaN NaN NaN 61.785 1 61.785 61.285 62.285 0 0 0 0 0.53105 1 13773 13773 1.6526 0 1 + 23270 27441 14534 14543 27477 27477 0.008408067808204578 LLDEALKY 8 Unmodified _LLDEALKY_ 0 0 0 nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;ENST00000571245.5_1_17:3831639-3833719:-|nuORF;ENST00000570773.5_1_17:3828718-3833746:-|nuORF nc|ENSG00000074370|Q93084-5|ATP2A3 nc|ENSG00000074370|Q93084-5|ATP2A3 MULTI-MSMS UPN47_class_I_Rep_2 3 482.7716064453125 2 482.771126 963.527698 0.25996 0.0001255 -0.15603 -7.5329E-05 0.10392 5.017E-05 482.7709754602953 59.864 1.0428 63.137 62.665 63.707 3.2731 151 65 4 0 0 0 0.82752 1 14136 14136 2.3027 0 1 810500 23271 1128 14535 14544 27478 27478 0.04447535837425676 LLDEHHISY 9 Unmodified _LLDEHHISY_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MSMS UPN47_class_I_Rep_1 2 563.780029296875 2 563.780013 1125.54547 -0.033904 -1.9115E-05 -0.0045083 -2.5417E-06 -0.038413 -2.1656E-05 563.7798728543207 37.956 0.67423 41.621 41.342 42.016 3.6652 92 52 2 0 0 0 0.10817 6 7291 7227;7238;7250;7291;7333;7350 32.305 16.458 1 164070 23272 1463 14536 14545 27479;27480;27481;27482;27483;27484 27482 -0.012277489076950587 LLDEHHISY 9 Unmodified _LLDEHHISY_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MSMS UPN47_class_I_Rep_2 3 563.7803344726562 2 563.780013 1125.54547 0.045368 2.5577E-05 0.24292 0.00013695 0.28829 0.00016253 563.7800716356571 38.335 0.7132 41.723 41.427 42.141 3.3879 87 57 2 0 0 0 0.082592 4 7422 7379;7422;7473;7515 37.974 16.227 1 138430 23273 1463 14536 14545 27485;27486;27487;27488 27486 -0.012277489076950587 LLDEHHISY 9 Unmodified _LLDEHHISY_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MSMS UPN47_class_I_Rep_3 4 563.7804565429688 2 563.780013 1125.54547 -0.057159 -3.2225E-05 0.18161 0.00010239 0.12445 7.0164E-05 563.7799484145286 38.469 0.6683 41.711 41.463 42.131 3.2414 88 49 2 0 0 0 0.15122 6 7485 7441;7485;7534;7560;7580;7622 25.399 13.759 1 122110 23274 1463 14536 14545 27489;27490;27491;27492;27493;27494 27490 -0.012277489076950587 LLDGSVITV 9 Unmodified _LLDGSVITV_ 0 0 0 REV__L1PB4_dup5035|chr10:75819956-75821487:+|2.4540767574552365|0.0272827934267379|6.49|149.0|56|1|anti-sense REV__L1PB4_dup5035|chr10:75819956-75821487:+|2.4540767574552365|0.0272827934267379|6.49|149.0|56|1|anti-sense MSMS UPN47_class_I_Rep_1 2 458.7712097167969 2 458.771126 915.527698 NaN NaN NaN NaN NaN NaN NaN 41.455 1 45.127 44.627 45.627 3.6726 0 0 0 0.089203 1 8327 8327 26.884 2.8631 1 + 23275 30600 14537 14546 27495 27495 0.06655535837433035 LLDHTAALFL 10 Unmodified _LLDHTAALFL_ 0 0 0 L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|69|1|anti-sense L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|69|1|anti-sense L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|69|1|anti-sense MSMS UPN48_class_I_Rep_2 6 557.3198852539062 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 98.749 1 102.52 102.02 103.02 3.7707 0 0 0 0.53105 1 23457 23457 1.4819 0.79152 1 23276 9674 14538 14547 27496 27496 0.07118889028447484 LLDHTAILF 9 Unmodified _LLDHTAILF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 521.8004150390625 2 521.800217 1041.58588 0.27234 0.0001421 0.064782 3.3803E-05 0.33712 0.00017591 521.8002520669495 69.908 0.30577 73.276 73.151 73.457 3.3678 52 28 3 0 0 0 0.11897 1 16964 16964 30.225 0 1 352060 23277 10206 14539 14548 27497 27497 0.0667521748271156 LLDHTAILF 9 Unmodified _LLDHTAILF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 521.8003540039062 2 521.800217 1041.58588 0.0023988 1.2517E-06 -0.26359 -0.00013754 -0.26119 -0.00013629 521.8004070010054 70.138 1.0045 73.421 73.006 74.011 3.2828 178 91 4 0 0 0 0.081857 1 17072 17072 38.151 0 1 456310 23278 10206 14539 14548 27498 27498 0.0667521748271156 LLDHTAILF 9 Unmodified _LLDHTAILF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 521.8004150390625 2 521.800217 1041.58588 0.32688 0.00017057 0.178 9.2878E-05 0.50488 0.00026345 521.8003385298477 70.107 1.0096 73.318 73.008 74.018 3.2113 157 84 2 0 0 0 0.081857 1 17140 17140 38.151 0 1 351760 23279 10206 14539 14548 27499 27499 0.0667521748271156 LLDHTAILF 9 Unmodified _LLDHTAILF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 521.800217 1041.58588 0.27234 0.0001421 0.064782 3.3803E-05 0.33712 0.00017591 521.8002520669495 69.908 0.30577 73.276 73.151 73.457 3.3678 -0.062535 5.4321E-05 NaN 38.151 52 28 3 NaN NaN NaN NaN 0 NaN NaN 0 352060 23280 10206 14539 14548 0.0667521748271156 LLDHTAILF 9 Unmodified _LLDHTAILF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 521.800217 1041.58588 0.0023988 1.2517E-06 -0.26359 -0.00013754 -0.26119 -0.00013629 521.8004070010054 70.138 1.0045 73.421 73.006 74.011 3.2828 0.082742 -0.00028837 NaN 38.151 178 91 4 NaN NaN NaN NaN 0 NaN NaN 0 456310 23281 10206 14539 14548 0.0667521748271156 LLDHTAILF 9 Unmodified _LLDHTAILF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|54|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 521.800217 1041.58588 0.32688 0.00017057 0.178 9.2878E-05 0.50488 0.00026345 521.8003385298477 70.107 1.0096 73.318 73.008 74.018 3.2113 -0.020206 0.00017247 NaN 38.151 157 84 2 NaN NaN NaN NaN 0 NaN NaN 0 351760 23282 10206 14539 14548 0.0667521748271156 LLDIKDSL 8 Unmodified _LLDIKDSL_ 0 0 0 REV__L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|29|2|sense REV__L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|29|2|sense MSMS UPN47_class_I_Rep_1 2 458.7712097167969 2 458.771126 915.527698 NaN NaN NaN NaN NaN NaN NaN 41.305 1 44.977 44.477 45.477 3.6719 0 0 0 0.367 1 8280 8280 18.146 0 1 + 23283 25968 14540 14549 27500 27500 0.06655535837421667 LLDKDLII 8 Unmodified _LLDKDLII_ 0 0 0 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 MSMS UPN47_class_I_Rep_2 3 471.79583740234375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 39.421 1 42.799 42.299 43.299 3.3785 0 0 0 0.4032 1 7740 7740 6.3541 0 1 23284 2040 14541 14550 27501 27501 0.10660699251184269 LLDKDLII 8 Unmodified _LLDKDLII_ 0 0 0 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 MSMS UPN47_class_I_Rep_2 3 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 39.625 1 43.004 42.504 43.504 3.3785 0 0 0 0.4032 1 7804 7804 6.3541 0 1 23285 2040 14541 14550 27502 27502 0.10660699251184269 LLDKDLII 8 Unmodified _LLDKDLII_ 0 0 0 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 MSMS UPN47_class_I_Rep_2 3 471.7957458496094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 40.426 1 43.798 43.298 44.298 3.3712 0 0 0 0.4032 1 8048 8048 6.3541 0 1 23286 2040 14541 14550 27503 27503 0.10660699251184269 LLDKDLII 8 Unmodified _LLDKDLII_ 0 0 0 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 ENSG00000113319|ENST00000265080|RASGRF2 MSMS UPN47_class_I_Rep_3 4 471.79541015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 39.841 1 43.078 42.578 43.578 3.2372 0 0 0 0.4032 1 7917 7917 6.3541 0 1 23287 2040 14541 14550 27504 27504 0.10660699251184269 LLDKPVFSFY 10 Unmodified _LLDKPVFSFY_ 0 0 0 ENST00000534096.5_1_19:50838046-50848012:-|nuORF;ENST00000599181.1_1_19:50862995-50864373:-|nuORF;ENSG00000131400|ENST00000253719|NAPSA ENST00000534096.5_1_19:50838046-50848012:-|nuORF ENST00000534096.5_1_19:50838046-50848012:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 614.8341674804688 2 614.834257 1227.65396 0.41253 0.00025364 -0.10548 -6.4853E-05 0.30705 0.00018879 614.8340662278614 72.886 0.56145 76.266 76.082 76.643 3.3799 80 36 3 0 0 0 0.21626 3 17861 17822;17861;17903 42.312 13.231 1 180530 23288 7316 14542 14551 27505;27506;27507 27506 0.04924042342713619 LLDKPVFSFY 10 Unmodified _LLDKPVFSFY_ 0 0 0 ENST00000534096.5_1_19:50838046-50848012:-|nuORF;ENST00000599181.1_1_19:50862995-50864373:-|nuORF;ENSG00000131400|ENST00000253719|NAPSA ENST00000534096.5_1_19:50838046-50848012:-|nuORF ENST00000534096.5_1_19:50838046-50848012:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 614.8345336914062 2 614.834257 1227.65396 0.43563 0.00026784 -0.30519 -0.00018764 0.13045 8.0202E-05 614.8340029681385 73.09 0.68562 76.387 75.972 76.657 3.2971 120 56 3 0 0 0 0.31951 2 17900 17900;17940 27.223 3.468 1 185020 23289 7316 14542 14551 27508;27509 27508 0.04924042342713619 LLDKPVFSFY 10 Unmodified _LLDKPVFSFY_ 0 0 0 ENST00000534096.5_1_19:50838046-50848012:-|nuORF;ENST00000599181.1_1_19:50862995-50864373:-|nuORF;ENSG00000131400|ENST00000253719|NAPSA ENST00000534096.5_1_19:50838046-50848012:-|nuORF ENST00000534096.5_1_19:50838046-50848012:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 614.8344116210938 2 614.834257 1227.65396 0.45938 0.00028244 -0.23265 -0.00014304 0.22673 0.0001394 614.8340326454711 73.144 0.65605 76.371 76.077 76.734 3.2271 125 56 3 0 0 0 0.34145 2 18067 18067;18107 24.882 7.7687 1 162660 23290 7316 14542 14551 27510;27511 27510 0.04924042342713619 LLDKSNPKI 9 Unmodified _LLDKSNPKI_ 0 0 0 L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|137|3|sense;L1PA6_dup3347|chr9:41258115-41264136:-|2.492461497170712|0.2942167730389589|3.08|150.0|142|3|sense L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|137|3|sense L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|137|3|sense MSMS UPN48_class_I_Rep_3 7 514.3110961914062 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 58.449 1 61.972 61.472 62.472 3.5231 0 0 0 0.37692 1 12667 12667 6.2058 0 1 23291 14611 14543 14552 27512 27512 0.09510602511409161 LLDLGPPW 8 Unmodified _LLDLGPPW_ 0 0 0 HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|77|1|anti-sense HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|77|1|anti-sense HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|77|1|anti-sense MSMS UPN46_class_I_Rep_3 1 455.7547302246094 2 455.755278 909.496004 NaN NaN NaN NaN NaN NaN NaN 25.399 1 25.399 24.899 25.899 0 0 0 0 0.40746 1 3478 3478 0.69038 0 1 23292 7790 14544 14553 27513 27513 0.03763587874141194 LLDLHASQTC 10 Unmodified _LLDLHASQTC_ 0 0 0 ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A MSMS UPN46_class_I_Rep_3 1 550.7722778320312 2 550.773874 1099.53319 NaN NaN NaN NaN NaN NaN NaN 49.715 1 49.715 49.215 50.215 0 0 0 0 0.53105 1 10455 10455 8.1555 0.8663 1 23293 5081 14545 14554 27514 27514 -0.012591086423981324 LLDLHASQTC 10 Unmodified _LLDLHASQTC_ 0 0 0 ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A MULTI-MSMS UPN47_class_I_Rep_2 3 550.7708740234375 2 550.773874 1099.53319 0.23337 0.00012854 -3.7031 -0.0020396 -3.4697 -0.001911 550.771603687831 45.85 0.2094 49.203 49.137 49.346 3.3534 19 13 2 0 0 0 0.56118 1 9709 9709 2.9952 0.41776 1 70184 23294 5081 14545 14554 27515 27515 -0.012591086423981324 LLDLHASQTC 10 Unmodified _LLDLHASQTC_ 0 0 0 ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A MULTI-MATCH UPN47_class_I_Rep_1 2 2 550.773874 1099.53319 0.14815 8.1599E-05 -0.54877 -0.00030225 -0.40061 -0.00022065 550.7725853030128 45.629 0.19189 49.329 49.258 49.45 3.6999 0.062713 0.0028584 NaN 2.9952 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 44067 23295 5081 14545 14554 -0.012591086423981324 LLDLLHAW 8 Unmodified _LLDLLHAW_ 0 0 0 REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense MSMS UPN46_class_I_Rep_3 1 490.7820129394531 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 64.666 1 64.666 64.166 65.166 0 0 0 0 0.40738 1 14569 14569 0.79363 0 1 + 23296 23816 14546 14555 27516 27516 0.05850965656804874 LLDLVCSLTL 10 Unmodified _LLDLVCSLTL_ 0 0 0 L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|57|3|anti-sense L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|57|3|anti-sense L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_2 6 545.3169555664062 2 545.314843 1088.61513 NaN NaN NaN NaN NaN NaN NaN 84.136 1 87.829 87.329 88.329 3.6937 0 0 0 0.53105 1 20020 20020 1.4819 0 1 23297 8803 14547 14556 27517 27517 0.07436993716692086 LLDLYIHF 8 Unmodified _LLDLYIHF_ 0 0 0 REV__L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|29|1|anti-sense REV__L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|29|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 516.7977294921875 2 517.289485 1032.56442 -0.18015 -9.3192E-05 -0.41597 -0.00021518 -0.59613 -0.00030837 517.2893537958196 27.969 0.7274 31.735 31.435 32.163 3.7662 76 58 2 0 0 0 0.72333 1 4362 4362 0.79363 0 1 91169 + 23298 24700 14548 14557 27518 27518 0.04943832453977848 LLDLYIHF 8 Unmodified _LLDLYIHF_ 0 0 0 REV__L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|29|1|anti-sense REV__L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|29|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 517.289485 1032.56442 -0.32095 -0.00016603 -0.369 -0.00019088 -0.68996 -0.00035691 517.2893329153497 28.212 0.70331 31.711 31.307 32.01 3.4986 -0.039251 -6.743E-05 NaN 0.79363 99 60 2 NaN NaN NaN NaN 0 NaN NaN 0 93516 + 23299 24700 14548 14557 0.04943832453977848 LLDLYIHF 8 Unmodified _LLDLYIHF_ 0 0 0 REV__L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|29|1|anti-sense REV__L1M5_dup54141|chr22:40543578-40544224:+|1.1644613920390687|0.0190387710843398|5.93|151.0|29|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 517.289485 1032.56442 -0.36237 -0.00018745 -0.20739 -0.00010728 -0.56976 -0.00029473 517.2894159357297 28.47 0.79567 31.804 31.358 32.153 3.3337 0.054116 9.9775E-05 NaN 0.79363 118 68 2 NaN NaN NaN NaN 0 NaN NaN 0 100270 + 23300 24700 14548 14557 0.04943832453977848 LLDPHVYGL 9 Unmodified _LLDPHVYGL_ 0 0 0 REV__ENSG00000135956|ENST00000258439|TMEM127 REV__ENSG00000135956|ENST00000258439|TMEM127 MSMS UPN46_class_I_Rep_3 1 513.7847290039062 2 513.784567 1025.55458 NaN NaN NaN NaN NaN NaN NaN 72.816 1 72.816 72.316 73.316 0 0 0 0 0.26661 1 16849 16849 12.532 0 1 + 23301 19163 14549 14558 27519 27519 0.04282644448608153 LLDQGQLNKY 10 Unmodified _LLDQGQLNKY_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN47_class_I_Rep_3 4 596.3218383789062 2 596.322045 1190.62954 0.16658 9.9338E-05 -0.11234 -6.6992E-05 0.054243 3.2346E-05 596.3218622095408 43.961 0.55329 47.203 46.85 47.403 3.2419 59 33 2 0 0 0 0.31534 1 9171 9171 28.495 16.254 1 139210 23302 3215 14550 14559 27520 27520 0.04184782189190628 LLDRFLATV 9 Unmodified _LLDRFLATV_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS UPN47_class_I_Rep_1 2 524.3131103515625 2 524.313492 1046.61243 0.27384 0.00014358 -0.41551 -0.00021786 -0.14167 -7.4279E-05 524.3132653140551 68.06 0.23016 71.425 71.215 71.445 3.3646 28 19 2 0 0 0 0.20317 1 16412 16412 20.415 2.2682 1 117060 23303 2263 14551 14560 27521 27521 0.09098906374038052 LLDRFLATV 9 Unmodified _LLDRFLATV_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS UPN47_class_I_Rep_1 2 524.3134765625 2 524.313492 1046.61243 0.27506 0.00014422 -0.43423 -0.00022767 -0.15917 -8.3455E-05 524.3132209826178 68.255 0.47549 71.62 71.445 71.921 3.3646 50 36 2 0 0 0 0.14216 1 16471 16471 26.268 0 1 143620 23304 2263 14551 14560 27522 27522 0.09098906374038052 LLDRFLATV 9 Unmodified _LLDRFLATV_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MATCH UPN47_class_I_Rep_3 4 2 524.313492 1046.61243 0.33962 0.00017807 -0.23861 -0.00012511 0.10101 5.2961E-05 524.313327342649 68.462 0.42749 71.66 71.323 71.75 3.1977 0.019945 0.0001115 NaN 26.268 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 126290 23305 2263 14551 14560 0.09098906374038052 LLDRLLYL 8 Unmodified _LLDRLLYL_ 0 0 0 ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B MULTI-MSMS UPN47_class_I_Rep_2 3 509.8187255859375 2 509.81841 1017.62227 0.096933 4.9418E-05 -0.13977 -7.1259E-05 -0.042841 -2.1841E-05 509.81834943619 69.337 0.93647 72.613 72.252 73.188 3.2761 128 75 2 0 0 0 0.82752 2 16900 16900;16953 48.346 3.9388 1 316060 23306 3285 14552 14561 27523;27524 27523 0.11416094379399055 LLDRLLYL 8 Unmodified _LLDRLLYL_ 0 0 0 ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B MULTI-MSMS UPN47_class_I_Rep_3 4 509.81842041015625 2 509.81841 1017.62227 0.26376 0.00013447 -0.23314 -0.00011886 0.030623 1.5612E-05 509.81820427046654 69.341 0.92645 72.545 72.194 73.12 3.2044 147 71 3 0 0 0 0.82752 1 16980 16980 48.346 3.9388 1 314850 23307 3285 14552 14561 27525 27525 0.11416094379399055 LLDSFEKSWS 10 Unmodified _LLDSFEKSWS_ 0 0 0 HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|74|2|anti-sense HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|74|2|anti-sense HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|74|2|anti-sense MSMS UPN47_class_I_Rep_2 3 404.53790283203125 3 404.536278 1210.587 NaN NaN NaN NaN NaN NaN NaN 54.811 1 58.13 57.63 58.63 3.3187 0 0 0 0.53105 1 12422 12422 1.9064 0.57673 1 23308 8023 14553 14562 27526 27526 -0.009866129390275091 LLDTVYKGI 9 Unmodified _LLDTVYKGI_ 0 0 0 ENST00000491066.1_1_X:153697015-153697611:+|nuORF;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;ENSG00000130827|ENST00000369682|PLXNA3 ENST00000491066.1_1_X:153697015-153697611:+|nuORF ENST00000491066.1_1_X:153697015-153697611:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 511.3004150390625 2 511.30005 1020.58555 0.19227 9.8306E-05 -0.1279 -6.5397E-05 0.064362 3.2908E-05 511.29987088712517 51.68 0.70759 55.013 54.663 55.371 3.3332 40 34 2 0 0 0 0.46869 1 11486 11486 3.9444 0.3479 1 79433 23309 2684 14554 14563 27527 27527 0.07607797762852897 LLDVLGSKP 9 Unmodified _LLDVLGSKP_ 0 0 0 MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|61|3|sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|61|3|sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|61|3|sense MSMS UPN47_class_I_Rep_1 2 471.286865234375 2 471.286943 940.559333 NaN NaN NaN NaN NaN NaN NaN 21.849 1 25.523 25.023 26.023 3.6749 0 0 0 0.39598 1 2441 2441 1.6526 0.96225 1 23310 16061 14555 14564 27528 27528 0.0866752859137705 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS UPN46_class_I_Rep_3 1 449.7655029296875 2 449.765843 897.517133 0.13556 6.0971E-05 -0.61201 -0.00027526 -0.47644 -0.00021429 449.7655262370058 69.463 0.21958 69.463 69.392 69.612 0 35 21 2 0 0 0 0.42249 1 15918 15918 6.7232 2.7788 1 152220 23311 5639 14556 14565 27529 27529 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MSMS UPN46_class_I_Rep_3 1 449.7657775878906 2 449.765843 897.517133 NaN NaN NaN NaN NaN NaN NaN 69.34 1 69.34 68.84 69.84 0 0 0 0 0.37476 1 15884 15884 6.7232 2.7788 1 23312 5639 14556 14565 27530 27530 0.06427553182993506 LLDYFWQAR 9 Unmodified _LLDYFWQAR_ 0 0 0 REV__L1ME3_dup8892|chr20:63759525-63760435:-|1.0540961484578473|0.3099288245854245|1.77|151.0|2|1|sense REV__L1ME3_dup8892|chr20:63759525-63760435:-|1.0540961484578473|0.3099288245854245|1.77|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 404.5373229980469 3 404.545108 1210.61349 NaN NaN NaN NaN NaN NaN NaN 54.7 1 58.201 57.701 58.701 3.5014 0 0 0 0.38299 1 12359 12359 2.7352 0.82882 1 + 23313 27973 14557 14566 27531 27531 0.016611207429377828 LLEAELAAL 9 Unmodified _LLEAELAAL_ 0 0 0 ENSG00000004776|ENST00000004982|HSPB6 ENSG00000004776|ENST00000004982|HSPB6 ENSG00000004776|ENST00000004982|HSPB6 MSMS UPN47_class_I_Rep_1 2 471.7659912109375 2 471.778951 941.543348 NaN NaN NaN NaN NaN NaN NaN 69.59 1 72.957 72.457 73.457 3.3678 0 0 0 0.34056 1 16869 16869 8.5933 2.2392 1 23314 685 14558 14567 27532 27532 0.07023822354460663 LLEDASPRLK 10 Unmodified _LLEDASPRLK_ 0 0 0 REV__ENSG00000169967|ENST00000682094|MAP3K2 REV__ENSG00000169967|ENST00000682094|MAP3K2 MSMS UPN48_class_I_Rep_1 5 571.3338012695312 2 571.332413 1140.65027 NaN NaN NaN NaN NaN NaN NaN 62.889 1 66.351 65.851 66.851 3.4625 0 0 0 0.53105 1 14112 14112 3.2813 1.2216 1 + 23315 20340 14559 14568 27533 27533 0.08557372568839128 LLEDQLSKL 9 Unmodified _LLEDQLSKL_ 0 0 0 nc|ENSG00000284862|Q9UFE4-2|CCDC39;nc|ENSG00000284862|Q9UFE4|CCDC39 nc|ENSG00000284862|Q9UFE4-2|CCDC39 nc|ENSG00000284862|Q9UFE4-2|CCDC39 MULTI-MSMS UPN47_class_I_Rep_2 3 529.8085327148438 2 529.808239 1057.60193 0.17199 9.112E-05 -0.0019331 -1.0242E-06 0.17005 9.0096E-05 529.8080620944245 68.984 0.17596 72.253 72.155 72.331 3.2696 21 14 2 0 0 0 0.28552 1 16707 16707 14.838 0 1 149650 23316 16853 14560 14569 27534 27534 0.0754287892893899 LLEEHPLHLDG 11 Unmodified _LLEEHPLHLDG_ 0 0 0 REV__ENST00000527679.5_1_11:62434908-62439046:-|nuORF REV__ENST00000527679.5_1_11:62434908-62439046:-|nuORF MSMS UPN48_class_I_Rep_1 5 636.8336181640625 2 636.832777 1271.651 NaN NaN NaN NaN NaN NaN NaN 51.574 1 55.096 54.596 55.596 3.5227 0 0 0 0.38417 1 10651 10651 5.2969 0.39987 1 + 23317 19917 14561 14570 27535 27535 0.02604167217896247 LLEEKLVL 8 Unmodified _LLEEKLVL_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS UPN47_class_I_Rep_2 3 478.8049011230469 2 478.804968 955.595384 NaN NaN NaN NaN NaN NaN NaN 64.81 1 68.066 67.566 68.566 3.2556 0 0 0 0.40404 1 15465 15465 5.2307 0 1 23318 856 14562 14571 27536 27536 0.11580985768216578 LLEEKRQTP 9 Unmodified _LLEEKRQTP_ 0 0 0 REV__ENSG00000081177|ENST00000685843|EXD2 REV__ENSG00000081177|ENST00000685843|EXD2 MSMS UPN47_class_I_Rep_2 3 557.7599487304688 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 70.173 1 73.456 72.956 73.956 3.2828 0 0 0 0.39428 1 17082 17082 2.0598 0 1 + 23319 17911 14563 14572 27537 27537 0.06716799534751772 LLEEKYRY 8 Unmodified _LLEEKYRY_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000152818|P46939-4|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS UPN47_class_I_Rep_3 4 557.3002319335938 2 557.300581 1112.58661 0.40121 0.0002236 -0.078445 -4.3717E-05 0.32277 0.00017988 557.3004152590036 62.319 0.75681 65.486 65.216 65.973 3.1667 103 47 3 0 0 0 0.82752 1 14908 14908 0.69038 0 1 206370 23320 3633 14564 14573 27538 27538 0.03482012131757983 LLEEVFNW 8 Unmodified _LLEEVFNW_ 0 0 0 REV__ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|9|intron REV__ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|9|intron MSMS UPN47_class_I_Rep_3 4 525.2703247070312 2 525.26875 1048.52295 NaN NaN NaN NaN NaN NaN NaN 58.734 1 61.899 61.399 62.399 3.1658 0 0 0 0.40472 1 13670 13670 4.3292 0 1 + 23321 19538 14565 14574 27539 27539 0.00062651694656779 LLEEYEER 8 Unmodified _LLEEYEER_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-SECPEP UPN47_class_I_Rep_3 4 541.2471313476562 2 540.764029 1079.5135 0.14267 7.7152E-05 0.84415 0.00045648 0.98682 0.00053364 540.7642271548143 44 0.64278 47.242 46.835 47.478 3.2419 51 39 2 0 0 0 0.72333 1 9241 9241 2.0598 0 1 71190 + 23322 19045 14566 14575 27540 27540 -0.023071613815318415 LLEGTTKLF 9 Unmodified _LLEGTTKLF_ 0 0 0 L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|35|2|anti-sense L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|35|2|anti-sense L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.2997131347656 2 511.30005 1020.58555 0.19227 9.8306E-05 -0.1279 -6.5397E-05 0.064362 3.2908E-05 511.29987088712517 51.68 0.70759 55.013 54.663 55.371 3.3332 40 34 2 0 0 0 0.45688 1 11431 11431 4.756 0 1 79433 23323 10650 14567 14576 27541 27541 0.07607797762841528 LLEHLQRI 8 Unmodified _LLEHLQRI_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MSMS UPN48_class_I_Rep_3 7 511.3089904785156 2 511.311284 1020.60801 NaN NaN NaN NaN NaN NaN NaN 49.318 1 52.947 52.447 53.447 3.6291 0 0 0 0.40746 1 9888 9888 0.69038 0 1 23324 2466 14568 14577 27542 27542 0.09853441951122477 LLEIKLKKHF 10 Unmodified _LLEIKLKKHF_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 634.3778076171875 2 634.908091 1267.80163 0.63449 0.00040285 0.54296 0.00034473 1.1775 0.00074758 634.9082420714143 104.74 0.12078 108.27 108.21 108.33 3.5327 24 18 2 0 0 0 0.84575 1 25434 25434 3.5965 0.60125 1 4238500 + 23325 25851 14569 14578 27543 27543 0.17843978667337979 LLEIKLKKHF 10 Unmodified _LLEIKLKKHF_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 634.3782958984375 2 634.908091 1267.80163 0.49746 0.00031584 0.2358 0.00014971 0.73325 0.00046555 634.9080209353451 104.37 0.14099 108.06 108.03 108.17 3.6991 28 21 2 0 0 0 0.84575 1 24693 24693 3.5965 2.1146 1 5894700 + 23326 25851 14569 14578 27544 27544 0.17843978667337979 LLEIKLKKHF 10 Unmodified _LLEIKLKKHF_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 634.3778076171875 2 634.908091 1267.80163 0.49742 0.00031582 0.44164 0.0002804 0.93907 0.00059622 634.908169612039 103.36 0.36433 107.07 106.79 107.15 3.7108 89 54 2 0 0 0 0.84575 1 24418 24418 3.5965 0 1 12863000 + 23327 25851 14569 14578 27545 27545 0.17843978667337979 LLEIKLKKHF 10 Unmodified _LLEIKLKKHF_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|149|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 634.3775634765625 2 634.908091 1267.80163 0.62068 0.00039408 -0.16332 -0.00010369 0.45737 0.00029039 635.4099700879002 104.96 0.13817 108.68 108.59 108.73 3.7192 33 20 2 0 0 0 0.84575 1 24765 24765 3.5965 0.60125 1 911060 + 23328 25851 14569 14578 27546 27546 0.17843978667337979 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS UPN47_class_I_Rep_1 2 584.3368530273438 2 584.336633 1166.65871 0.34177 0.00019971 0.056239 3.2863E-05 0.39801 0.00023257 584.336590430124 68.041 1.1485 71.406 71.035 72.183 3.3646 179 87 3 0 0 0 0.048662 7 16395 16320;16359;16395;16433;16475;16515;16608 49.554 11.58 1 370210 23329 3639 14570 14579 27547;27548;27549;27550;27551;27552;27553 27549 0.08204926485473152 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS UPN47_class_I_Rep_2 3 584.337158203125 2 584.336633 1166.65871 0.39119 0.00022859 0.080413 4.6989E-05 0.4716 0.00027558 584.3364911449456 68.243 0.65205 71.513 71.192 71.844 3.2696 145 56 3 0 0 0 0.088679 5 16511 16434;16472;16511;16552;16588 36.506 7.0112 1 350800 23330 3639 14570 14579 27554;27555;27556;27557;27558 27556 0.08204926485473152 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS UPN47_class_I_Rep_2 3 584.3367309570312 2 584.336633 1166.65871 0.39455 0.00023055 -0.34498 -0.00020158 0.049575 2.8969E-05 584.3365063501276 68.614 0.1981 71.884 71.844 72.042 3.2696 27 17 2 0 0 0 0.14216 1 16628 16628 26.268 7.0112 1 179720 23331 3639 14570 14579 27559 27559 0.08204926485473152 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS UPN47_class_I_Rep_3 4 584.3365478515625 2 584.336633 1166.65871 0.44362 0.00025923 -0.0084526 -4.9392E-06 0.43517 0.00025429 584.3365093989219 68.355 0.63041 71.553 71.218 71.849 3.1977 92 42 3 0 0 0 0.066364 3 16625 16543;16584;16625 41.956 3.6823 1 304260 23332 3639 14570 14579 27560;27561;27562 27562 0.08204926485473152 LLEKEILFY 9 Unmodified _LLEKEILFY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS UPN47_class_I_Rep_3 4 584.3358764648438 2 584.336633 1166.65871 0.44466 0.00025983 -0.17739 -0.00010365 0.26727 0.00015618 584.336521617852 68.629 0.54904 71.827 71.71 72.259 3.1977 80 44 3 0 0 0 0.17897 5 16754 16665;16704;16754;16764;16796 22.736 7.898 1 161060 23333 3639 14570 14579 27563;27564;27565;27566;27567 27565 0.08204926485473152 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.3881225585938 2 626.387188 1250.75982 0.55634 0.00034849 0.62655 0.00039246 1.1829 0.00074095 626.8887469438961 103.74 0.65985 107.5 107.09 107.75 3.7627 160 99 2 0 0 0 0.59712 4 25495 25485;25495;25522;25531 5.2969 1.7004 1 63557000 + 23334 28243 14571 14580 27568;27569;27570;27571 27569 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.3886108398438 2 626.387188 1250.75982 0.63462 0.00039752 0.45222 0.00028327 1.0868 0.00068078 626.889175283031 105.88 0.43265 109.42 109.27 109.71 3.5345 86 64 2 0 0 0 0.67264 1 25700 25700 1.1933 0 1 1214200 + 23335 28243 14571 14580 27572 27572 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 626.388671875 2 626.387188 1250.75982 0.63462 0.00039752 0.45222 0.00028327 1.0868 0.00068078 626.889175283031 105.88 0.43265 109.42 109.27 109.71 3.5345 86 64 2 0 0 0 22.551 1 25644 25644 2.7352 0 1 1214200 + 23336 28243 14571 14580 27573 27573 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.8914184570312 2 626.387188 1250.75982 0.5124 0.00032096 0.44148 0.00027654 0.95388 0.0005975 626.3875531485476 103.83 0.50715 107.35 106.98 107.48 3.5205 124 74 2 0 0 0 0.65559 5 25419 25387;25391;25419;25473;25475 2.7352 0 1 57116000 + 23337 28243 14571 14580 27574;27575;27576;27577;27578 27576 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.889404296875 2 626.387188 1250.75982 0.42779 0.00026796 0.06491 4.0659E-05 0.4927 0.00030862 626.3871281359764 105.15 0.33216 108.77 108.69 109.02 3.6247 67 46 2 0 0 0 0.65559 1 25378 25378 2.7352 0 1 4571900 + 23338 28243 14571 14580 27579 27579 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 626.387451171875 2 626.387188 1250.75982 NaN NaN NaN NaN NaN NaN NaN 104.95 1 108.57 108.07 109.07 3.6247 0 0 0 0.38417 1 25289 25289 5.2969 0 1 + 23339 28243 14571 14580 27580 27580 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3895874023438 2 626.387188 1250.75982 0.49469 0.00030987 0.2906 0.00018203 0.78529 0.00049189 626.3873899313614 104.36 0.14741 108.06 108.03 108.17 3.6991 42 22 2 0 0 0 0.59712 1 24709 24709 5.2969 2.0156 1 37578000 + 23340 28243 14571 14580 27581 27581 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 626.3925170898438 2 626.387188 1250.75982 0.4947 0.00030988 -1.1209 -0.00070212 -0.6262 -0.00039224 626.3866339962977 104.19 0.23666 107.89 107.8 108.03 3.6991 54 33 2 0 0 0 22.551 1 24641 24641 5.2969 0.39987 1 61772000 + 23341 28243 14571 14580 27582 27582 0.14447378188197035 LLEKIIHISSV 11 Unmodified _LLEKIIHISSV_ 0 0 0 REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense REV__L1ME4b_dup11249|chr9:85624692-85625467:-|1.0378910630595697|0.0124011374409881|6.39|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.8887329101562 2 626.387188 1250.75982 0.59988 0.00037576 0.14004 8.7717E-05 0.73991 0.00046347 626.3874894811144 104.56 0.21893 108.28 108.19 108.41 3.7192 50 30 2 0 0 0 0.59712 1 24695 24695 5.2969 2.3016 1 19374000 + 23342 28243 14571 14580 27583 27583 0.14447378188197035 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.4041137695312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 43.661 1 43.661 43.161 44.161 0 0 0 0 0.53105 1 8736 8736 1.4819 0.15237 1 + 23343 21424 14572 14581 27584 27584 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.7344970703125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 51.267 1 51.267 50.767 51.767 0 0 0 0 0.53105 1 10885 10885 1.4819 0.15237 1 + 23344 21424 14572 14581 27585 27585 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.4033813476562 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 53.011 1 53.011 52.511 53.511 0 0 0 0 0.53105 1 11373 11373 1.4819 0 1 + 23345 21424 14572 14581 27586 27586 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.403564453125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 54.29 1 54.29 53.79 54.79 0 0 0 0 0.53105 1 11742 11742 1.4819 0 1 + 23346 21424 14572 14581 27587 27587 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.358154296875 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 68.482 1 68.482 67.982 68.982 0 0 0 0 0.53105 1 15640 15640 1.4819 0 1 + 23347 21424 14572 14581 27588 27588 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.331787109375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 71.142 1 71.142 70.642 71.642 0 0 0 0 0.53105 1 16376 16376 1.4819 0.15237 1 + 23348 21424 14572 14581 27589 27589 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.4046020507812 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 91.58 1 91.58 91.08 92.08 0 0 0 0 0.53105 1 22126 22126 1.4819 0.15237 1 + 23349 21424 14572 14581 27590 27590 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN46_class_I_Rep_3 1 615.4037475585938 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 92.524 1 92.524 92.024 93.024 0 0 0 0 0.53105 1 22393 22393 1.4819 0.15237 1 + 23350 21424 14572 14581 27591 27591 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.644775390625 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 111.46 1 115.03 114.53 115.53 3.572 0 0 0 0.53105 1 27497 27497 1.4819 0.15237 1 + 23351 21424 14572 14581 27592 27592 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.404052734375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 112.88 1 116.45 115.95 116.95 3.572 0 0 0 0.53105 1 27839 27839 1.4819 0.15237 1 + 23352 21424 14572 14581 27593 27593 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.4033203125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 113.1 1 116.68 116.18 117.18 3.572 0 0 0 0.53105 1 27899 27899 1.4819 0.15237 1 + 23353 21424 14572 14581 27594 27594 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.4037475585938 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 115.92 1 119.52 119.02 120.02 3.5943 0 0 0 0.53105 1 28697 28697 1.4819 0.15237 1 + 23354 21424 14572 14581 27595 27595 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.4041137695312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 117.18 1 120.79 120.29 121.29 3.6036 0 0 0 0.53105 1 29044 29044 1.4819 0 1 + 23355 21424 14572 14581 27596 27596 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.6807250976562 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 117.9 1 121.5 121 122 3.6036 0 0 0 0.53105 1 29241 29241 1.4819 0 1 + 23356 21424 14572 14581 27597 27597 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.6609497070312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 119.47 1 123.08 122.58 123.58 3.6036 0 0 0 0.53105 1 29691 29691 1.4819 0 1 + 23357 21424 14572 14581 27598 27598 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_1 2 615.630859375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 119.9 1 123.51 123.01 124.01 3.6036 0 0 0 0.53105 1 29814 29814 1.4819 0 1 + 23358 21424 14572 14581 27599 27599 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4061279296875 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 60.717 1 63.982 63.482 64.482 3.2654 0 0 0 0.53105 1 14225 14225 2.9952 0 1 + 23359 21424 14572 14581 27600 27600 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.404052734375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 63.943 1 67.199 66.699 67.699 3.2556 0 0 0 0.53105 1 15199 15199 1.4819 0 1 + 23360 21424 14572 14581 27601 27601 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.40380859375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 67.342 1 70.605 70.105 71.105 3.2636 0 0 0 0.53105 1 16235 16235 1.4819 0.15237 1 + 23361 21424 14572 14581 27602 27602 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.404541015625 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 69.167 1 72.443 71.943 72.943 3.2761 0 0 0 0.53105 1 16780 16780 1.4819 0.15237 1 + 23362 21424 14572 14581 27603 27603 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.404052734375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 69.292 1 72.568 72.068 73.068 3.2761 0 0 0 0.53105 1 16818 16818 1.4819 0.15237 1 + 23363 21424 14572 14581 27604 27604 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4037475585938 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 70.441 1 73.724 73.224 74.224 3.2828 0 0 0 0.53105 1 17163 17163 1.4819 0.15237 1 + 23364 21424 14572 14581 27605 27605 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4033813476562 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 70.837 1 74.12 73.62 74.62 3.2828 0 0 0 0.53105 1 17281 17281 1.4819 0.15237 1 + 23365 21424 14572 14581 27606 27606 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.404052734375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 71.172 1 74.462 73.962 74.962 3.2899 0 0 0 0.53105 1 17378 17378 1.4819 0 1 + 23366 21424 14572 14581 27607 27607 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4038696289062 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 71.301 1 74.591 74.091 75.091 3.2899 0 0 0 0.53105 1 17417 17417 1.4819 0.15237 1 + 23367 21424 14572 14581 27608 27608 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4036254882812 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 71.889 1 75.179 74.679 75.679 3.2899 0 0 0 0.53105 1 17597 17597 1.4819 0.15237 1 + 23368 21424 14572 14581 27609 27609 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4058227539062 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 74.618 1 77.931 77.431 78.431 3.3127 0 0 0 0.53105 1 18394 18394 1.4819 0.15237 1 + 23369 21424 14572 14581 27610 27610 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4049682617188 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 75.547 1 78.869 78.369 79.369 3.3216 0 0 0 0.53105 1 18659 18659 1.4819 0.15237 1 + 23370 21424 14572 14581 27611 27611 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4039916992188 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 113.22 1 116.74 116.24 117.24 3.5171 0 0 0 0.53105 1 27530 27530 1.4819 0.15237 1 + 23371 21424 14572 14581 27612 27612 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_2 3 615.4036865234375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 119.76 1 123.24 122.74 123.74 3.4793 0 0 0 0.53105 1 29347 29347 1.4819 0 1 + 23372 21424 14572 14581 27613 27613 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.6430053710938 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 17.528 1 20.886 20.386 21.386 3.3581 0 0 0 0.53105 1 1297 1297 1.4819 0.15237 1 + 23373 21424 14572 14581 27614 27614 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4056396484375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 60.815 1 63.98 63.48 64.48 3.1651 0 0 0 0.53105 1 14305 14305 1.4819 0.95714 1 + 23374 21424 14572 14581 27615 27615 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4041748046875 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 71.479 1 74.698 74.198 75.198 3.2188 0 0 0 0.53105 1 17540 17540 1.4819 0.15237 1 + 23375 21424 14572 14581 27616 27616 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4042358398438 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 73.653 1 76.889 76.389 77.389 3.2363 0 0 0 0.53105 1 18202 18202 1.4819 0.15237 1 + 23376 21424 14572 14581 27617 27617 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4044799804688 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 80.267 1 83.576 83.076 84.076 3.309 0 0 0 0.53105 1 20089 20089 1.4819 0.15237 1 + 23377 21424 14572 14581 27618 27618 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4038696289062 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 113.29 1 116.79 116.29 117.29 3.5098 0 0 0 0.53105 1 27783 27783 1.4819 0.15237 1 + 23378 21424 14572 14581 27619 27619 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.403076171875 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 114.61 1 118.09 117.59 118.59 3.4802 0 0 0 0.53105 1 28152 28152 1.4819 0.15237 1 + 23379 21424 14572 14581 27620 27620 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4033203125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 115.82 1 119.28 118.78 119.78 3.462 0 0 0 0.53105 1 28491 28491 1.4819 0.15237 1 + 23380 21424 14572 14581 27621 27621 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.40380859375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 116.41 1 119.87 119.37 120.37 3.462 0 0 0 0.53105 1 28645 28645 1.4819 0.15237 1 + 23381 21424 14572 14581 27622 27622 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.403564453125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 116.74 1 120.18 119.68 120.68 3.4425 0 0 0 0.53105 1 28737 28737 1.4819 0.15237 1 + 23382 21424 14572 14581 27623 27623 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4039916992188 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 117.24 1 120.69 120.19 121.19 3.4425 0 0 0 0.53105 1 28879 28879 1.4819 0.15237 1 + 23383 21424 14572 14581 27624 27624 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN47_class_I_Rep_3 4 615.4035034179688 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 119.8 1 123.21 122.71 123.71 3.4157 0 0 0 0.53105 1 29599 29599 1.4819 0.15237 1 + 23384 21424 14572 14581 27625 27625 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_1 5 615.4044799804688 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 101.93 1 105.55 105.05 106.05 3.612 0 0 0 0.53105 1 24593 24593 1.4819 0.15237 1 + 23385 21424 14572 14581 27626 27626 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_1 5 615.4036865234375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.06 115.56 116.56 3.6321 0 0 0 0.53105 1 27282 27282 1.4819 0.15237 1 + 23386 21424 14572 14581 27627 27627 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_1 5 615.4041137695312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 112.67 1 116.3 115.8 116.8 3.6321 0 0 0 0.53105 1 27347 27347 1.4819 0.15237 1 + 23387 21424 14572 14581 27628 27628 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_1 5 615.4034423828125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 114.36 1 117.99 117.49 118.49 3.6301 0 0 0 0.53105 1 27801 27801 1.4819 0.15237 1 + 23388 21424 14572 14581 27629 27629 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_1 5 615.7316284179688 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 118.66 1 122.28 121.78 122.78 3.6189 0 0 0 0.53105 1 28947 28947 1.4819 0 1 + 23389 21424 14572 14581 27630 27630 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.404052734375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 69.897 1 73.418 72.918 73.918 3.5216 0 0 0 0.53105 1 16223 16223 1.4819 0.15237 1 + 23390 21424 14572 14581 27631 27631 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.403564453125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 70.618 1 74.154 73.654 74.654 3.5359 0 0 0 0.53105 1 16435 16435 1.4819 0.15237 1 + 23391 21424 14572 14581 27632 27632 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.4043579101562 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 70.822 1 74.357 73.857 74.857 3.5359 0 0 0 0.53105 1 16493 16493 1.4819 0.15237 1 + 23392 21424 14572 14581 27633 27633 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.4047241210938 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 75.422 1 79.014 78.514 79.514 3.5921 0 0 0 0.53105 1 17786 17786 1.4819 0.15237 1 + 23393 21424 14572 14581 27634 27634 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.4034423828125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 112.51 1 116.18 115.68 116.68 3.6648 0 0 0 0.53105 1 26810 26810 1.4819 0.15237 1 + 23394 21424 14572 14581 27635 27635 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.69921875 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 113.43 1 117.09 116.59 117.59 3.663 0 0 0 0.53105 1 27072 27072 1.4819 0.15237 1 + 23395 21424 14572 14581 27636 27636 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.7319946289062 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 114.93 1 118.59 118.09 119.09 3.6616 0 0 0 0.53105 1 27493 27493 1.4819 0 1 + 23396 21424 14572 14581 27637 27637 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_2 6 615.4037475585938 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 116.32 1 119.98 119.48 120.48 3.6607 0 0 0 0.53105 1 27861 27861 1.4819 0 1 + 23397 21424 14572 14581 27638 27638 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4046020507812 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 61.044 1 64.557 64.057 65.057 3.5129 0 0 0 0.53105 1 13457 13457 1.4819 0 1 + 23398 21424 14572 14581 27639 27639 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4036865234375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 70.541 1 74.06 73.56 74.56 3.5185 0 0 0 0.53105 1 16327 16327 1.4819 0.15237 1 + 23399 21424 14572 14581 27640 27640 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4039306640625 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 72.96 1 76.497 75.997 76.997 3.5373 0 0 0 0.53105 1 17044 17044 1.4819 0.15237 1 + 23400 21424 14572 14581 27641 27641 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4041137695312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 74.134 1 77.684 77.184 78.184 3.5505 0 0 0 0.53105 1 17369 17369 1.4819 0.15237 1 + 23401 21424 14572 14581 27642 27642 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4072875976562 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 74.537 1 78.087 77.587 78.587 3.5505 0 0 0 0.53105 1 17465 17465 1.4819 0.95714 1 + 23402 21424 14572 14581 27643 27643 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4058227539062 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 93.385 1 97.276 96.776 97.776 3.8914 0 0 0 0.53105 1 22128 22128 1.4819 0.15237 1 + 23403 21424 14572 14581 27644 27644 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4039306640625 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 114.55 1 118.2 117.7 118.7 3.6511 0 0 0 0.53105 1 27240 27240 1.4819 0.15237 1 + 23404 21424 14572 14581 27645 27645 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4041137695312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 115.4 1 119.05 118.55 119.55 3.6433 0 0 0 0.53105 1 27456 27456 1.4819 0.15237 1 + 23405 21424 14572 14581 27646 27646 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.2389526367188 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 116.3 1 119.93 119.43 120.43 3.6312 0 0 0 0.53105 1 27679 27679 1.4819 0.15237 1 + 23406 21424 14572 14581 27647 27647 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4031372070312 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 117.65 1 121.26 120.76 121.76 3.6124 0 0 0 0.53105 1 27982 27982 1.4819 0 1 + 23407 21424 14572 14581 27648 27648 0.1888550307544392 LLEKIKKMKV 10 Unmodified _LLEKIKKMKV_ 0 0 0 REV__ENSG00000273559|ENST00000614790|CWC25 REV__ENSG00000273559|ENST00000614790|CWC25 MSMS UPN48_class_I_Rep_3 7 615.4034423828125 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 118.84 1 122.42 121.92 122.92 3.5847 0 0 0 0.53105 1 28254 28254 1.4819 0 1 + 23408 21424 14572 14581 27649 27649 0.1888550307544392 LLEKLIFRKA 10 Unmodified _LLEKLIFRKA_ 0 0 0 REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|140|2|anti-sense REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|140|2|anti-sense MSMS UPN47_class_I_Rep_1 2 615.9019775390625 2 615.900266 1229.78598 NaN NaN NaN NaN NaN NaN NaN 90.902 1 94.592 94.092 95.092 3.6899 0 0 0 0.53105 1 22700 22700 1.4819 0 1 + 23409 28731 14573 14582 27650 27650 0.18027692150326402 LLEKLRVMR 9 Unmodified _LLEKLRVMR_ 0 0 0 REV__MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|33|3|sense REV__MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 579.3613891601562 2 579.362993 1156.71143 NaN NaN NaN NaN NaN NaN NaN 109.17 1 112.71 112.21 113.21 3.5347 0 0 0 0.4007 1 26810 26810 0.52476 0 1 + 23410 31421 14574 14583 27651 27651 0.13934606067300592 LLEKPRFF 8 Unmodified _LLEKPRFF_ 0 0 0 ENST00000231572.7_1_5:167943936-167944917:+|nuORF ENST00000231572.7_1_5:167943936-167944917:+|nuORF ENST00000231572.7_1_5:167943936-167944917:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.310791015625 2 525.310752 1048.60695 0.33066 0.0001737 0.13368 7.0221E-05 0.46433 0.00024392 525.3107738281411 75.258 0.41555 78.758 78.607 79.022 3.4996 67 40 3 0 0 0 0.82752 1 17808 17808 16.942 2.104 1 314510 23411 5886 14575 14584 27652 27652 0.08459227582216045 LLEKPRFF 8 Unmodified _LLEKPRFF_ 0 0 0 ENST00000231572.7_1_5:167943936-167944917:+|nuORF ENST00000231572.7_1_5:167943936-167944917:+|nuORF ENST00000231572.7_1_5:167943936-167944917:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 525.3111572265625 2 525.310752 1048.60695 0.38814 0.0002039 0.49534 0.00026021 0.88348 0.0004641 525.310930662708 75.019 0.12744 78.609 78.528 78.656 3.59 26 12 3 0 0 0 0.82752 1 17681 17681 11.64 11.64 1 151880 23412 5886 14575 14584 27653 27653 0.08459227582216045 LLELINKFSC 10 Unmodified _LLELINKFSC_ 0 0 0 L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|12|1|sense L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|12|1|sense L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 590.327392578125 2 590.325742 1178.63693 NaN NaN NaN NaN NaN NaN NaN 51.053 1 54.721 54.221 55.221 3.6679 0 0 0 0.53105 1 10484 10484 1.1933 0.12188 1 23413 8668 14576 14585 27654 27654 0.054757984652496816 LLELKLDV 8 Unmodified _LLELKLDV_ 0 0 0 REV__ENSG00000106952|ENST00000223795|TNFSF8 REV__ENSG00000106952|ENST00000223795|TNFSF8 MULTI-MSMS UPN47_class_I_Rep_2 3 472.30035400390625 2 471.797143 941.579734 0.08139 3.84E-05 -0.31642 -0.00014929 -0.23503 -0.00011089 471.79553982273404 50.135 0.87384 53.479 53.147 54.021 3.3431 80 45 3 0 0 0 0.82752 1 11005 11005 5.7604 0 1 204920 + 23414 18344 14577 14586 27655 27655 0.106606992511729 LLELKLDV 8 Unmodified _LLELKLDV_ 0 0 0 REV__ENSG00000106952|ENST00000223795|TNFSF8 REV__ENSG00000106952|ENST00000223795|TNFSF8 MULTI-MSMS UPN47_class_I_Rep_3 4 472.3003234863281 2 471.797143 941.579734 0.051057 2.4089E-05 -1.0169 -0.00047976 -0.96582 -0.00045567 471.7956599741969 50.297 0.59335 53.523 53.317 53.91 3.2262 62 32 3 0 0 0 0.82752 2 11061 11061;11075 9.3474 0 1 275060 + 23415 18344 14577 14586 27656;27657 27656 0.106606992511729 LLELLVLCLV 10 Unmodified _LLELLVLCLV_ 0 0 0 L1MD_dup6179|chr11:68561967-68563019:+|1.6827978071690304|0.1247266934321703|3.75|151.0|41|1|anti-sense L1MD_dup6179|chr11:68561967-68563019:+|1.6827978071690304|0.1247266934321703|3.75|151.0|41|1|anti-sense L1MD_dup6179|chr11:68561967-68563019:+|1.6827978071690304|0.1247266934321703|3.75|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_2 3 564.3037719726562 2 564.359053 1126.70355 NaN NaN NaN NaN NaN NaN NaN 81.646 1 85.03 84.53 85.53 3.3839 0 0 0 0.53105 1 20338 20338 0.45834 0 1 23416 11884 14578 14587 27658 27658 0.14527034027128138 LLELRSLRP 9 Unmodified _LLELRSLRP_ 0 0 0 AluJb_dup89367|chr13:50004179-50004478:+|1.0996053493960092|0.0618343018060658|4.15|151.0|2|1|sense;AluJb_dup36390|chr5:76918209-76918504:-|1.1344363006149338|0.007389891797451|7.26|148.0|7|2|sense;AluJo_dup4395|chr1:153878163-153878424:-|1.0240295287516463|0.0076981842998052|7.06|151.0|9|3|sense;AluJo_dup71942|chr19:35894425-35894704:+|1.4078389743127684|0.1088520139561088|3.69|151.0|1|1|sense;AluJb_dup3231|chr1:35838970-35839242:-|2.2140867663287653|0.2830038031644736|2.97|151.0|1|1|sense;AluJb_dup14915|chr2:68245089-68245377:+|1.0277676046022115|0.0098351661010441|6.71|151.0|1|1|sense;AluJb_dup7440|chr1:148426065-148426352:-|1.1218988828049332|0.0806707101057989|3.8|151.0|1|1|sense AluJb_dup89367|chr13:50004179-50004478:+|1.0996053493960092|0.0618343018060658|4.15|151.0|2|1|sense AluJb_dup89367|chr13:50004179-50004478:+|1.0996053493960092|0.0618343018060658|4.15|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.8446044921875 2 548.84549 1095.67643 0.31494 0.00017286 0.13785 7.5659E-05 0.4528 0.00024851 548.8454877369472 51.145 1.0251 54.756 54.254 55.279 3.6105 176 74 3 0 0 0 0.46869 1 10308 10308 3.9444 0 1 496940 23417 34 14579 14588 27659 27659 0.1324168653097786 LLELSWAPP 9 Unmodified _LLELSWAPP_ 0 0 0 L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|240|1|anti-sense L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|240|1|anti-sense L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|240|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2864990234375 2 513.286943 1024.55933 0.21472 0.00011021 -0.25194 -0.00012932 -0.037221 -1.9105E-05 513.2868156686156 49.642 0.53752 53.271 52.989 53.526 3.6291 49 33 2 0 0 0 0.40174 1 9970 9970 7.9102 0 1 85910 23418 14498 14580 14589 27660 27660 0.04803528591378381 LLENGFVILHS 11 Unmodified _LLENGFVILHS_ 0 0 0 L1MDa_dup4696|chr10:87340625-87341148:-|1.1438384986164265|0.0104681177947158|6.77|150.0|29|2|anti-sense;L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|48|1|anti-sense L1MDa_dup4696|chr10:87340625-87341148:-|1.1438384986164265|0.0104681177947158|6.77|150.0|29|2|anti-sense L1MDa_dup4696|chr10:87340625-87341148:-|1.1438384986164265|0.0104681177947158|6.77|150.0|29|2|anti-sense MSMS UPN48_class_I_Rep_3 7 621.3463745117188 2 621.348063 1240.68157 NaN NaN NaN NaN NaN NaN NaN 40.349 1 44 43.5 44.5 3.6509 0 0 0 0.38417 1 7163 7163 2.7352 0 1 23419 11948 14581 14590 27661 27661 0.07085945602943866 LLEPSTLLF 9 Unmodified _LLEPSTLLF_ 0 0 0 HAL1_dup4189|chr3:23862992-23863523:-|2.6738888404246537|0.0388308709648445|6.11|151.0|32|2|anti-sense HAL1_dup4189|chr3:23862992-23863523:-|2.6738888404246537|0.0388308709648445|6.11|151.0|32|2|anti-sense HAL1_dup4189|chr3:23862992-23863523:-|2.6738888404246537|0.0388308709648445|6.11|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.8021240234375 2 516.802426 1031.5903 0.34894 0.00018033 -0.63577 -0.00032857 -0.28682 -0.00014823 516.8020599308277 89.152 0.30789 92.89 92.745 93.053 3.7379 60 37 2 0 0 0 0.066041 1 21212 21212 42.095 2.1372 1 185000 23420 7890 14582 14591 27662 27662 0.07576681905629812 LLEQIKLNMK 10 Unmodified _LLEQIKLNMK_ 0 0 0 REV__ENST00000495513.1_1_2:197521477-197537114:+|nuORF REV__ENST00000495513.1_1_2:197521477-197537114:+|nuORF MSMS UPN48_class_I_Rep_1 5 615.3678588867188 2 615.367941 1228.72133 NaN NaN NaN NaN NaN NaN NaN 67.073 1 70.524 70.024 71.024 3.4516 0 0 0 0.53105 1 15386 15386 1.4819 0 1 + 23421 22654 14583 14592 27663 27663 0.11611749281996708 LLERRVDK 8 Unmodified _LLERRVDK_ 0 0 0 REV__L1MEf_dup4902|chr7:37237842-37239170:-|2.5010148271050467|0.0387803188486166|6.01|151.0|93|3|anti-sense REV__L1MEf_dup4902|chr7:37237842-37239170:-|2.5010148271050467|0.0387803188486166|6.01|151.0|93|3|anti-sense MSMS UPN47_class_I_Rep_3 4 514.812744140625 2 514.81419 1027.61383 NaN NaN NaN NaN NaN NaN NaN 62.214 1 65.381 64.881 65.881 3.1667 0 0 0 0.39996 1 14733 14733 7.9102 0 1 + 23422 28648 14584 14593 27664 27664 0.1011254046279646 LLFATNRRLR 10 Unmodified _LLFATNRRLR_ 0 0 0 MER51A_dup61|chr1:235669278-235669899:+|2.352766528801335|0.1451792121987301|4.02|150.0|19|1|anti-sense MER51A_dup61|chr1:235669278-235669899:+|2.352766528801335|0.1451792121987301|4.02|150.0|19|1|anti-sense MER51A_dup61|chr1:235669278-235669899:+|2.352766528801335|0.1451792121987301|4.02|150.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 630.385986328125 2 630.388388 1258.76222 NaN NaN NaN NaN NaN NaN NaN 74.173 1 74.173 73.673 74.673 0 0 0 0 0.53105 1 17206 17206 1.6526 0.17072 1 23423 16084 14585 14594 27665 27665 0.14319271436488634 LLFCVFVF 8 Unmodified _LLFCVFVF_ 0 0 0 L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|73|3|anti-sense L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|73|3|anti-sense L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|73|3|anti-sense MSMS UPN47_class_I_Rep_1 2 494.2729797363281 2 494.27225 986.529947 NaN NaN NaN NaN NaN NaN NaN 72.591 1 75.971 75.471 76.471 3.3799 0 0 0 0.40738 1 17772 17772 0.79363 0 1 23424 14125 14586 14595 27666 27666 0.0361429304153944 LLFDHIASV 9 Unmodified _LLFDHIASV_ 0 0 0 LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|25|2|anti-sense LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|25|2|anti-sense LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_2 3 507.784423828125 2 507.784567 1013.55458 NaN NaN NaN NaN NaN NaN NaN 66.73 1 69.989 69.489 70.489 3.2588 0 0 0 0.37476 1 16049 16049 6.7232 0 1 23425 15614 14587 14596 27667 27667 0.04834644448601466 LLFDHIASV 9 Unmodified _LLFDHIASV_ 0 0 0 LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|25|2|anti-sense LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|25|2|anti-sense LTR3_dup17|chr5:69305488-69305904:+|1.039603315620585|0.0675901922956832|3.94|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_2 3 507.78466796875 2 507.784567 1013.55458 NaN NaN NaN NaN NaN NaN NaN 66.896 1 70.16 69.66 70.66 3.2636 0 0 0 0.37476 1 16100 16100 6.7232 0 1 23426 15614 14587 14596 27668 27668 0.04834644448601466 LLFDYQFPR 9 Unmodified _LLFDYQFPR_ 0 0 0 REV__ENST00000539966.5_1_13:99104432-99104537:-|nuORF REV__ENST00000539966.5_1_13:99104432-99104537:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 599.8162841796875 2 599.816399 1197.61824 0.5623 0.00033728 -0.27011 -0.00016202 0.29219 0.00017526 599.8166071978719 64.392 0.19717 67.9 67.834 68.031 3.5083 22 17 2 0 0 0 0.42249 1 14482 14482 6.7232 0 1 81519 + 23427 22908 14588 14597 27669 27669 0.027340048857013244 LLFDYQFPR 9 Unmodified _LLFDYQFPR_ 0 0 0 REV__ENST00000539966.5_1_13:99104432-99104537:-|nuORF REV__ENST00000539966.5_1_13:99104432-99104537:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 599.816399 1197.61824 0.5623 0.00033728 -0.27011 -0.00016202 0.29219 0.00017526 599.8166071978719 64.392 0.19717 67.9 67.834 68.031 3.5083 -0.013986 0.00020621 NaN 6.7232 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 81519 + 23428 22908 14588 14597 0.027340048857013244 LLFFFMLFY 9 Unmodified _LLFFFMLFY_ 0 0 0 REV__L1PA15_dup2141|chr4:128966846-128967948:-|2.0306328165853182|0.0483774873828693|5.39|151.0|59|2|anti-sense REV__L1PA15_dup2141|chr4:128966846-128967948:-|2.0306328165853182|0.0483774873828693|5.39|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 620.8262939453125 2 620.827389 1239.64023 NaN NaN NaN NaN NaN NaN NaN 83.838 1 87.566 87.066 88.066 3.7281 0 0 0 0.3264 1 19885 19885 9.3474 0 1 + 23429 29203 14589 14598 27670 27670 0.029990933099270478 LLFFHVFH 8 Unmodified _LLFFHVFH_ 0 0 0 REV__L1MD2_dup3878|chr6:149329898-149330867:-|1.1242072856726404|0.0159576560177415|6.14|151.0|45|1|anti-sense REV__L1MD2_dup3878|chr6:149329898-149330867:-|1.1242072856726404|0.0159576560177415|6.14|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.2922973632812 2 530.292362 1058.57017 NaN NaN NaN NaN NaN NaN NaN 27.311 1 30.942 30.442 31.442 3.6311 0 0 0 0.40581 1 3601 3601 2.8892 0 1 + 23430 27402 14590 14599 27671 27671 0.04322975756326741 LLFFIFLKM 9 Unmodified _LLFFIFLKM_ 0 0 0 REV__L1PB1_dup12805|chr21:38429755-38430473:-|1.3377279755372773|0.0304197072125728|5.46|147.0|29|1|anti-sense REV__L1PB1_dup12805|chr21:38429755-38430473:-|1.3377279755372773|0.0304197072125728|5.46|147.0|29|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3518676757812 2 586.351031 1170.68751 0.51933 0.00030451 -0.081539 -4.781E-05 0.43779 0.0002567 586.3510033150944 64.713 0.47765 68.167 67.845 68.323 3.4541 52 36 2 0 0 0 0.48643 1 14609 14609 2.0598 0 1 216350 + 23431 30349 14591 14600 27672 27672 0.10899372580888667 LLFFKLAP 8 Unmodified _LLFFKLAP_ 0 0 0 REV__L1PA15-16_dup5|chr1:42301502-42302665:-|2.8515431731834604|0.0314866484386066|6.5|151.0|54|2|anti-sense REV__L1PA15-16_dup5|chr1:42301502-42302665:-|2.8515431731834604|0.0314866484386066|6.5|151.0|54|2|anti-sense MSMS UPN46_class_I_Rep_3 1 474.79937744140625 2 474.799489 947.584425 NaN NaN NaN NaN NaN NaN NaN 84.736 1 84.736 84.236 85.236 0 0 0 0 0.40746 1 20177 20177 0.69038 0 1 + 23432 29304 14592 14601 27673 27673 0.10853628184599984 LLFFLFRLLLR 11 Unmodified _LLFFLFRLLLR_ 0 0 0 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 MSMS UPN47_class_I_Rep_1 2 484.3152770996094 3 484.314747 1449.92241 NaN NaN NaN NaN NaN NaN NaN 72.078 1 75.458 74.958 75.958 3.3799 0 0 0 0.38417 1 17614 17614 0.094841 0 1 23433 4553 14593 14602 27674 27674 0.21544806380848058 LLFFLIKP 8 Unmodified _LLFFLIKP_ 0 0 0 REV__L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|79|1|anti-sense REV__L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|79|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2953186035156 2 495.822964 989.631375 -0.036633 -1.8164E-05 2.7805 0.0013786 2.7438 0.0013605 495.82390494336136 26.292 0.12816 26.292 26.212 26.34 0 14 12 2 0 0 0 0.72333 1 3737 3737 0 0 1 35788 + 23434 29886 14594 14603 27675 27675 0.13614487735765124 LLFFLLSVRKL 11 Unmodified _LLFFLLSVRKL_ 0 0 0 REV__L1ME1_dup8613|chr4:139133765-139134354:-|2.0167515260118862|0.2944598718161614|2.78|151.0|27|1|anti-sense REV__L1ME1_dup8613|chr4:139133765-139134354:-|2.0167515260118862|0.2944598718161614|2.78|151.0|27|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 450.29595947265625 3 450.295353 1347.86423 0.22862 0.00010295 0.41636 0.00018749 0.64499 0.00029043 450.295411924893 53.69 0.67905 57.3 57.003 57.682 3.6098 57 49 2 0 0 0 22.551 1 11231 11231 0.094841 0 1 63262 + 23435 27807 14595 14604 27676 27676 0.2042112473557154 LLFFSFFC 8 Unmodified _LLFFSFFC_ 0 0 0 L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|36|1|anti-sense L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|36|1|anti-sense L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.25439453125 2 512.254057 1022.49356 0.028302 1.4498E-05 0.0038359 1.9649E-06 0.032138 1.6463E-05 512.2540504059606 47.414 0.97311 51.109 50.685 51.659 3.6951 154 86 2 0 0 0 0.82752 1 10135 10135 14.582 0 1 444680 23436 13246 14596 14605 27677 27677 -0.01678583855175475 LLFFVFLG 8 Unmodified _LLFFVFLG_ 0 0 0 REV__L1PB1_dup11088|chr14:67923598-67924410:-|1.2241406358612803|0.012563424004481|6.61|151.0|44|2|anti-sense REV__L1PB1_dup11088|chr14:67923598-67924410:-|1.2241406358612803|0.012563424004481|6.61|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_1 5 478.08746337890625 2 478.286214 954.557876 NaN NaN NaN NaN NaN NaN NaN 31.862 1 35.396 34.896 35.896 3.5342 0 0 0 0.40738 1 4768 4768 0.79363 0 1 + 23437 24049 14597 14606 27678 27678 0.07877939293291547 LLFFYLSR 8 Unmodified _LLFFYLSR_ 0 0 0 REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|161|3|anti-sense REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|161|3|anti-sense MSMS UPN48_class_I_Rep_2 6 529.8048095703125 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 23.055 1 26.698 26.198 27.198 3.6432 0 0 0 0.40738 1 2450 2450 0.79363 0 1 + 23438 25319 14598 14607 27679 27679 0.0695582520793323 LLFFYLSR 8 Unmodified _LLFFYLSR_ 0 0 0 REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|161|3|anti-sense REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|161|3|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8049926757812 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 19.633 1 23.254 22.754 23.754 3.6215 0 0 0 0.40738 1 1521 1521 0.79363 0 1 + 23439 25319 14598 14607 27680 27680 0.0695582520793323 LLFHLALLY 9 Unmodified _LLFHLALLY_ 0 0 0 Tigger1_dup5698|chr7:76556512-76557740:+|3.104862179242995|0.173057913218828|4.17|151.0|69|2|anti-sense;Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|110|2|anti-sense Tigger1_dup5698|chr7:76556512-76557740:+|3.104862179242995|0.173057913218828|4.17|151.0|69|2|anti-sense Tigger1_dup5698|chr7:76556512-76557740:+|3.104862179242995|0.173057913218828|4.17|151.0|69|2|anti-sense MSMS UPN48_class_I_Rep_1 5 551.8168334960938 2 551.836603 1101.65865 NaN NaN NaN NaN NaN NaN NaN 59.139 1 62.619 62.119 63.119 3.4801 0 0 0 0.082921 1 12968 12968 28.173 7.302 1 23440 33060 14599 14608 27681 27681 0.11188971276123993 LLFHWQSK 8 Unmodified _LLFHWQSK_ 0 0 0 REV__L1MA9_dup6461|chr6:156179976-156181245:-|1.1376321925819466|0.0044439783988554|8.0|149.0|3|1|sense REV__L1MA9_dup6461|chr6:156179976-156181245:-|1.1376321925819466|0.0044439783988554|8.0|149.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 529.7905883789062 2 529.792727 1057.5709 NaN NaN NaN NaN NaN NaN NaN 111.21 1 114.84 114.34 115.34 3.6326 0 0 0 0.40738 1 26981 26981 0.79363 0 1 + 23441 25641 14600 14609 27682 27682 0.0444177040537852 LLFKLKPVHF 10 Unmodified _LLFKLKPVHF_ 0 0 0 ENST00000515144.5_1_5:14488550-14489156:+|nuORF ENST00000515144.5_1_5:14488550-14489156:+|nuORF ENST00000515144.5_1_5:14488550-14489156:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 621.3931274414062 2 621.392077 1240.7696 0.63454 0.0003943 1.1803 0.00073345 1.8149 0.0011278 621.3926301671313 96.935 0.22729 100.41 100.37 100.6 3.4791 40 31 2 0 0 0 0.56333 1 23803 23803 1.4819 1.0236 1 126760 23442 7202 14601 14610 27683 27683 0.1588461098422158 LLFLFFFL 8 Unmodified _LLFLFFFL_ 0 0 0 L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|5|1|sense;L1MA3_dup6326|chr11:31385743-31390062:+|1.427362471674382|0.0854743694721729|4.06|151.0|202|2|anti-sense;L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|143|3|anti-sense L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|5|1|sense L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.316162109375 2 530.317515 1058.62048 -0.15827 -8.3933E-05 -1.1581 -0.00061417 -1.3164 -0.0006981 530.8185445911515 14.657 0.19781 18.132 18.036 18.234 3.475 35 20 2 0 0 0 0.82752 1 618 618 2.8892 0 1 32325 23443 9353 14602 14611 27684 27684 0.093510853614589 LLFLFFFL 8 Unmodified _LLFLFFFL_ 0 0 0 L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|5|1|sense;L1MA3_dup6326|chr11:31385743-31390062:+|1.427362471674382|0.0854743694721729|4.06|151.0|202|2|anti-sense;L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|143|3|anti-sense L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|5|1|sense L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 530.317515 1058.62048 -0.1613 -8.5542E-05 -1.6709 -0.0008861 -1.8322 -0.00097165 530.3165937100403 14.792 0.21393 18.179 18.063 18.277 3.3871 0.024335 -0.00035885 NaN 2.8892 40 25 2 NaN NaN NaN NaN 0 NaN NaN 0 30909 23444 9353 14602 14611 0.093510853614589 LLFLKIKC 8 Unmodified _LLFLKIKC_ 0 0 0 L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 490.2860107421875 2 489.314449 976.614345 0.29216 0.00014296 -0.5068 -0.00024799 -0.21465 -0.00010503 489.3141303305263 89.679 0.36839 89.679 89.517 89.885 0 67 33 3 0 0 0 0.82752 1 21550 21550 0 0 1 2002500 23445 12628 14603 14612 27685 27685 0.1251024385827577 LLFLKIKC 8 Unmodified _LLFLKIKC_ 0 0 0 L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 489.31463623046875 2 489.314449 976.614345 0.29179 0.00014278 -0.24381 -0.0001193 0.047983 2.3479E-05 489.31425653103264 90.162 0.194 90.162 90.121 90.315 0 20 14 2 0 0 0 0.82752 1 21747 21747 0 0 1 313600 23446 12628 14603 14612 27686 27686 0.1251024385827577 LLFLKIKC 8 Unmodified _LLFLKIKC_ 0 0 0 L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 489.314449 976.614345 0.29216 0.00014296 -0.5068 -0.00024799 -0.21465 -0.00010503 489.3141303305263 89.679 0.36839 89.679 89.517 89.885 0 -0.020996 -0.00012195 NaN 0 67 33 3 NaN NaN NaN NaN 0 NaN NaN 0 2002500 23447 12628 14603 14612 0.1251024385827577 LLFLKIKC 8 Unmodified _LLFLKIKC_ 0 0 0 L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 489.314449 976.614345 0.39331 0.00019245 -0.51969 -0.00025429 -0.12638 -6.1839E-05 489.3141314708245 86.303 0.66098 89.736 89.456 90.117 3.4329 0.035795 -0.00013455 NaN 0 134 91 3 NaN NaN NaN NaN 0 NaN NaN 0 401490 23448 12628 14603 14612 0.1251024385827577 LLFLKIKC 8 Unmodified _LLFLKIKC_ 0 0 0 L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 489.314449 976.614345 0.25878 0.00012662 -0.34143 -0.00016707 -0.082659 -4.0446E-05 489.3141979079098 85.968 0.6955 89.674 89.33 90.026 3.7058 -0.02601 3.9889E-05 NaN 0 175 78 3 NaN NaN NaN NaN 0 NaN NaN 0 1064300 23449 12628 14603 14612 0.1251024385827577 LLFLKIKC 8 Unmodified _LLFLKIKC_ 0 0 0 L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense L1ME3A_dup12478|chr14:95440301-95440905:+|1.72873556779335|0.1818976696034226|3.25|151.0|29|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 489.314449 976.614345 0.26148 0.00012795 -0.3397 -0.00016622 -0.078219 -3.8274E-05 489.3142018701709 85.941 0.82077 89.711 89.397 90.217 3.7701 0.011211 4.1585E-05 NaN 0 241 99 3 NaN NaN NaN NaN 0 NaN NaN 0 1324800 23450 12628 14603 14612 0.1251024385827577 LLFLYPIRFG 10 Unmodified _LLFLYPIRFG_ 0 0 0 L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 619.869873046875 2 619.868434 1237.72232 0.49176 0.00030482 1.3059 0.00080946 1.7976 0.0011143 619.8691465144411 87.572 0.32455 91.3 91.211 91.536 3.7279 46 36 2 0 0 0 0.56333 1 20853 20853 1.4819 0.15237 1 172490 23451 9758 14604 14613 27687 27687 0.11296331713197105 LLFLYPIRFG 10 Unmodified _LLFLYPIRFG_ 0 0 0 L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 619.868434 1237.72232 0.65548 0.00040631 1.1102 0.00068818 1.7657 0.0010945 619.8690620480652 91.309 0.44888 91.309 91.11 91.559 0 0.028539 -0.00015993 NaN 1.4819 62 40 2 NaN NaN NaN NaN 0 NaN NaN 0 986950 23452 9758 14604 14613 0.11296331713197105 LLFLYPIRFG 10 Unmodified _LLFLYPIRFG_ 0 0 0 L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|378|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 619.868434 1237.72232 0.60359 0.00037414 1.3121 0.00081333 1.9157 0.0011875 619.8691084076098 87.442 0.65791 91.232 90.704 91.362 3.7905 -0.048074 9.0367E-05 NaN 1.4819 158 84 3 NaN NaN NaN NaN 0 NaN NaN 0 498320 23453 9758 14604 14613 0.11296331713197105 LLFNRNRV 8 Unmodified _LLFNRNRV_ 0 0 0 HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|165|3|anti-sense HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|165|3|anti-sense HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|165|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.308349609375 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 30.059 1 33.803 33.303 34.303 3.7449 0 0 0 0.40746 1 4862 4862 0.69038 0 1 23454 8117 14605 14614 27688 27688 0.08951977528226962 LLFPTEGHRG 10 Unmodified _LLFPTEGHRG_ 0 0 0 REV__AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|5|2|sense REV__AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 563.80322265625 2 563.803823 1125.59309 0.46922 0.00026455 -0.15124 -8.5271E-05 0.31798 0.00017928 563.803672608023 35.489 0.62341 39.177 38.857 39.48 3.6877 85 59 2 0 0 0 0.56118 1 5887 5887 2.9952 0 1 108140 + 23455 17134 14606 14615 27689 27689 0.035319500831292316 LLFRIQVFY 9 Unmodified _LLFRIQVFY_ 0 0 0 L1MC5a_dup8122|chr8:53822090-53823501:+|1.3567133943632763|0.0143915198049523|6.56|151.0|72|2|anti-sense L1MC5a_dup8122|chr8:53822090-53823501:+|1.3567133943632763|0.0143915198049523|6.56|151.0|72|2|anti-sense L1MC5a_dup8122|chr8:53822090-53823501:+|1.3567133943632763|0.0143915198049523|6.56|151.0|72|2|anti-sense MSMS UPN46_class_I_Rep_3 1 400.23809814453125 3 400.237615 1197.69102 NaN NaN NaN NaN NaN NaN NaN 34.165 1 34.165 33.665 34.665 0 0 0 0 0.3979 1 6066 6066 1.1933 0 1 23456 11765 14607 14616 27690 27690 0.10007758679148537 LLFRIVLKRRL 11 Unmodified _LLFRIVLKRRL_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MSMS UPN47_class_I_Rep_3 4 476.32080078125 3 476.329279 1425.96601 NaN NaN NaN NaN NaN NaN NaN 61.754 1 64.921 64.421 65.421 3.1667 0 0 0 0.38417 1 14591 14591 0.50596 0 1 23457 3091 14608 14617 27691 27691 0.27006415877963263 LLFRSMICL 9 Unmodified _LLFRSMICL_ 0 0 0 REV__L1MD1_dup4786|chr11:78406666-78407349:+|3.387740589240161|0.0215834998344596|7.29|151.0|33|1|anti-sense REV__L1MD1_dup4786|chr11:78406666-78407349:+|3.387740589240161|0.0215834998344596|7.29|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 548.7379150390625 2 548.306298 1094.59804 0.026139 1.4332E-05 -0.60035 -0.00032918 -0.57421 -0.00031485 548.3059706813741 27.302 0.26783 30.8 30.751 31.019 3.4986 32 21 2 0 0 0 0.12235 1 4137 4137 0.52476 0 1 47329 + 23458 27350 14609 14618 27692 27692 0.05452794629877644 LLFSLPSPQQ 10 Unmodified _LLFSLPSPQQ_ 0 0 0 ENST00000518462.1_1_7:150066645-150068442:+|nuORF ENST00000518462.1_1_7:150066645-150068442:+|nuORF ENST00000518462.1_1_7:150066645-150068442:+|nuORF MSMS UPN48_class_I_Rep_3 7 565.3164672851562 2 565.316232 1128.61791 NaN NaN NaN NaN NaN NaN NaN 21.982 1 25.696 25.196 26.196 3.7144 0 0 0 0.53105 1 2168 2168 1.3295 0.5359 1 23459 7215 14610 14619 27693 27693 0.0587458516586139 LLFSSTALQ 9 Unmodified _LLFSSTALQ_ 0 0 0 REV__nc|ENSG00000106330|O75425-3|MOSPD3 REV__nc|ENSG00000106330|O75425-3|MOSPD3 MULTI-MSMS UPN47_class_I_Rep_1 2 490.27587890625 2 490.276575 978.538597 0.12108 5.9361E-05 0.33928 0.00016634 0.46035 0.0002257 490.27645338350305 69.898 0.32706 73.266 73.13 73.457 3.3678 53 30 2 0 0 0 0.40174 1 16983 16983 7.9102 0.62092 1 86617 + 23460 18323 14611 14620 27694 27694 0.04846938211710494 LLFVTELQ 8 Unmodified _LLFVTELQ_ 0 0 0 REV__ENST00000594208.5_1_19:47983149-47986424:-|nuORF REV__ENST00000594208.5_1_19:47983149-47986424:-|nuORF MSMS UPN47_class_I_Rep_1 2 481.78009033203125 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 22.11 1 25.785 25.285 26.285 3.6749 0 0 0 0.40625 1 2513 2513 2.3027 0 1 + 23461 18648 14612 14621 27695 27695 0.06612126217078185 LLFVVSKHH 9 Unmodified _LLFVVSKHH_ 0 0 0 REV__ENST00000533089.5_1_1:92220604-92236473:-|nuORF REV__ENST00000533089.5_1_1:92220604-92236473:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 539.7562866210938 2 540.321651 1078.62875 -0.13691 -7.3976E-05 -0.37376 -0.00020195 -0.51067 -0.00027593 540.3214269233937 19.175 0.086971 19.175 19.135 19.222 0 9 8 2 0 0 0 0.12462 1 1800 1800 1.8442 1.8442 1 42552 + 23462 17786 14613 14622 27696 27696 0.09258032330808419 LLFWGKVRT 9 Unmodified _LLFWGKVRT_ 0 0 0 REV__nc|ENSG00000012660|Q9NYP7-2|ELOVL5 REV__nc|ENSG00000012660|Q9NYP7-2|ELOVL5 MSMS UPN46_class_I_Rep_3 1 560.3388061523438 2 560.337301 1118.66005 NaN NaN NaN NaN NaN NaN NaN 106.63 1 106.63 106.13 107.13 0 0 0 0 0.39518 1 26001 26001 1.8442 0 1 + 23463 17585 14614 14623 27697 27697 0.10546605364902462 LLFWKGLRF 9 Unmodified _LLFWKGLRF_ 0 0 0 HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|81|3|anti-sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|81|3|anti-sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|81|3|anti-sense MSMS UPN48_class_I_Rep_3 7 590.3553466796875 2 590.355494 1178.69644 NaN NaN NaN NaN NaN NaN NaN 103.19 1 106.93 106.43 107.43 3.7434 0 0 0 0.40038 1 24375 24375 0.6015 0 1 23464 8159 14615 14624 27698 27698 0.1142348226157992 LLFWVGQPY 9 Unmodified _LLFWVGQPY_ 0 0 0 ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6 ENSG00000113361|ENST00000265071|CDH6 ENSG00000113361|ENST00000265071|CDH6 MSMS UPN47_class_I_Rep_1 2 561.8019409179688 2 561.80276 1121.59097 NaN NaN NaN NaN NaN NaN NaN 58.886 1 62.303 61.803 62.803 3.4171 0 0 0 0.38478 1 13631 13631 4.3292 0.38484 1 23465 2041 14616 14625 27699 27699 0.035035213453284086 LLFYAQEAA 9 Unmodified _LLFYAQEAA_ 0 0 0 REV__L1M2_dup7324|chr13:49164871-49166809:-|1.8632098958411731|0.3999969272436301|2.22|151.0|107|3|anti-sense REV__L1M2_dup7324|chr13:49164871-49166809:-|1.8632098958411731|0.3999969272436301|2.22|151.0|107|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.2688598632812 2 513.26875 1024.52295 0.27582 0.00014157 -0.033446 -1.7167E-05 0.24237 0.0001244 513.2686452013764 78.066 1.3085 81.495 81.098 82.407 3.4289 269 128 3 0 0 0 0.35081 1 19599 19599 10.824 0 1 2011500 + 23466 24232 14617 14626 27700 27700 0.011666516946434058 LLFYCVCPV 9 Unmodified _LLFYCVCPV_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|171|2|anti-sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|171|2|anti-sense MSMS UPN47_class_I_Rep_2 3 528.74853515625 2 528.766474 1055.5184 NaN NaN NaN NaN NaN NaN NaN 79.413 1 82.768 82.268 83.268 3.3554 0 0 0 0.3264 1 19769 19769 9.3474 1.4373 1 + 23467 23854 14618 14627 27701 27701 -0.007142720441152051 LLFYCVCPV 9 Unmodified _LLFYCVCPV_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|171|2|anti-sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|171|2|anti-sense MSMS UPN47_class_I_Rep_3 4 528.7482299804688 2 528.766474 1055.5184 NaN NaN NaN NaN NaN NaN NaN 79.221 1 82.516 82.016 83.016 3.295 0 0 0 0.22893 1 19789 19789 14.582 5.2343 1 + 23468 23854 14618 14627 27702 27702 -0.007142720441152051 LLGDVIPRF 9 Unmodified _LLGDVIPRF_ 0 0 0 HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|26|2|sense HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|26|2|sense HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|26|2|sense MSMS UPN46_class_I_Rep_3 1 515.307373046875 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 89.348 1 89.348 88.848 89.848 0 0 0 0 0.38784 1 21492 21492 3.5965 0.31518 1 23469 8040 14619 14628 27703 27703 0.08870923719609891 LLGESRLVP 9 Unmodified _LLGESRLVP_ 0 0 0 REV__MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|14|2|sense REV__MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|14|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 492.76275634765625 2 492.297842 982.581131 0.063986 3.15E-05 0.15528 7.6443E-05 0.21926 0.00010794 492.29811817700664 45.226 0.084297 48.579 48.53 48.614 3.3535 6 4 2 0 0 0 0.12383 1 9514 9514 3.2813 0.54611 1 36386 + 23470 31235 14620 14629 27704 27704 0.08914333339942004 LLGFFKPFF 9 Unmodified _LLGFFKPFF_ 0 0 0 Tigger15a_dup1783|chr5:132455317-132455680:-|2.215965210793352|0.1699983252650649|3.7|151.0|25|2|anti-sense Tigger15a_dup1783|chr5:132455317-132455680:-|2.215965210793352|0.1699983252650649|3.7|151.0|25|2|anti-sense Tigger15a_dup1783|chr5:132455317-132455680:-|2.215965210793352|0.1699983252650649|3.7|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_3 7 558.3174438476562 2 558.318046 1114.62154 NaN NaN NaN NaN NaN NaN NaN 54.225 1 57.794 57.294 58.294 3.5694 0 0 0 0.3264 1 11379 11379 9.3474 0 1 23471 33236 14621 14630 27705 27705 0.06881299730389401 LLGGKKKH 8 Unmodified _LLGGKKKH_ 0 0 0 HERVL40-int_dup12|chr1:50944262-50946073:-|3.779550568521216|0.0317905816218364|6.89|151.0|115|3|anti-sense HERVL40-int_dup12|chr1:50944262-50946073:-|3.779550568521216|0.0317905816218364|6.89|151.0|115|3|anti-sense HERVL40-int_dup12|chr1:50944262-50946073:-|3.779550568521216|0.0317905816218364|6.89|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_2 3 440.7994689941406 2 440.789987 879.565421 NaN NaN NaN NaN NaN NaN NaN 29.945 1 33.437 32.937 33.937 3.4923 0 0 0 0.40738 1 4868 4868 0.79363 0 1 23472 8393 14622 14631 27706 27706 0.12082091613558532 LLGHMFNLL 9 Unmodified _LLGHMFNLL_ 0 0 0 L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|93|1|anti-sense L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|93|1|anti-sense L1MA4A_dup55|chr1:42245938-42248252:+|2.436764850403246|0.057699327942722|5.4|151.0|93|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 529.297607421875 2 529.296788 1056.57902 0.39758 0.00021044 1.6386 0.00086731 2.0362 0.0010777 529.2976372019156 56.505 0.37299 60.006 59.786 60.159 3.5014 39 30 2 0 0 0 0.41259 1 12157 12157 7.2892 0 1 143010 23473 9836 14623 14632 27707 27707 0.05299581330496039 LLGHMHLH 8 Unmodified _LLGHMHLH_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MSMS UPN47_class_I_Rep_2 3 479.2577819824219 2 479.257997 956.501441 NaN NaN NaN NaN NaN NaN NaN 22.154 1 25.578 25.078 26.078 3.4241 0 0 0 0.40738 1 2585 2585 0.79363 0 1 23474 3183 14624 14633 27708 27708 0.021449881849662233 LLGIKKSVL 9 Unmodified _LLGIKKSVL_ 0 0 0 REV__SLC39A13|p.L291Pfs*49|1|0.08|ENSG00000165915|chr11:47414853-47414854|-/G|frameshift_variant REV__SLC39A13|p.L291Pfs*49|1|0.08|ENSG00000165915|chr11:47414853-47414854|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 485.8357849121094 2 485.836603 969.658653 -0.15997 -7.7721E-05 -0.19189 -9.3228E-05 -0.35186 -0.00017095 485.836535324177 29.875 0.81159 33.367 32.992 33.803 3.4923 82 67 2 0 0 0 0.46434 1 4857 4857 4.3292 0 1 66153 + 23475 20143 14625 14634 27709 27709 0.17260971276130022 LLGKLIAKRHK 11 Unmodified _LLGKLIAKRHK_ 0 0 0 L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|16|2|sense L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|16|2|sense L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|16|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 639.4332885742188 2 638.932431 1275.85031 0.63452 0.00040542 -1.652 -0.0010555 -1.0175 -0.00065008 639.4324667027339 108.42 0.1246 111.95 111.9 112.03 3.5333 16 11 2 0 0 0 22.551 1 26321 26321 0.30703 0.30703 1 1073000 23476 12219 14626 14635 27710 27710 0.22341892027134236 LLGNLYVFIL 10 Unmodified _LLGNLYVFIL_ 0 0 0 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 MULTI-SECPEP UPN46_class_I_Rep_3 1 582.3530883789062 2 582.854993 1163.69543 0.51979 0.00030296 0.31075 0.00018112 0.83054 0.00048408 582.8550905448863 98.772 0.046387 98.772 98.748 98.795 0 5 3 2 0 0 0 0.84575 1 24056 24056 1.8442 0 1 86659 23477 4154 14627 14636 27711 27711 0.12013223102030679 LLGPLASIK 9 Unmodified _LLGPLASIK_ 0 0 0 REV__L1MA4_dup5824|chrX:40716605-40717285:+|1.6504203754793|0.2255023692528711|2.87|151.0|2|1|sense REV__L1MA4_dup5824|chrX:40716605-40717285:+|1.6504203754793|0.2255023692528711|2.87|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 456.30084228515625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.471 1 44.122 43.622 44.622 3.6509 0 0 0 0.39518 1 7201 7201 1.8442 0 1 + 23478 25188 14628 14637 27712 27712 0.1262842283366581 LLGPLASIK 9 Unmodified _LLGPLASIK_ 0 0 0 REV__L1MA4_dup5824|chrX:40716605-40717285:+|1.6504203754793|0.2255023692528711|2.87|151.0|2|1|sense REV__L1MA4_dup5824|chrX:40716605-40717285:+|1.6504203754793|0.2255023692528711|2.87|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 456.30133056640625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 41.851 1 45.497 44.997 45.997 3.6458 0 0 0 0.39518 1 7605 7605 1.8442 0 1 + 23479 25188 14628 14637 27713 27713 0.1262842283366581 LLGPRLVLA 9 Unmodified _LLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS UPN46_class_I_Rep_3 1 476.8234558105469 2 476.32112 950.627687 0.20355 9.6957E-05 -0.31468 -0.00014989 -0.11112 -5.2929E-05 476.3208254589824 68.049 0.50375 68.049 67.84 68.344 0 70 51 2 0 0 0 0.12799 1 15527 15527 28.487 5.3384 1 709190 23480 4467 14629 14638 27714 27714 0.15039817961894641 LLGPRLVLA 9 Unmodified _LLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-SECPEP UPN47_class_I_Rep_1 2 476.3208923339844 2 476.32112 950.627687 0.13581 6.4691E-05 -0.28819 -0.00013727 -0.15238 -7.2583E-05 476.32081045657054 61.346 0.76261 64.727 64.305 65.067 3.3815 126 57 3 0 0 0 0.053131 1 14328 14328 34.102 5.6156 1 347800 23481 4467 14629 14638 27715 27715 0.15039817961894641 LLGPRLVLA 9 Unmodified _LLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-SECPEP UPN47_class_I_Rep_2 3 476.3209228515625 2 476.32112 950.627687 0.14732 7.017E-05 -0.28598 -0.00013622 -0.13866 -6.6047E-05 476.32073213152773 61.575 0.81067 64.834 64.498 65.309 3.2594 114 51 3 0 0 0 0.060395 1 14519 14519 32.305 5.4218 1 273240 23482 4467 14629 14638 27716 27716 0.15039817961894641 LLGPSVHF 8 Unmodified _LLGPSVHF_ 0 0 0 MER31A_dup1007|chr12:101908388-101908852:-|1.3570551238417865|0.0247320186929682|5.78|151.0|7|2|sense MER31A_dup1007|chr12:101908388-101908852:-|1.3570551238417865|0.0247320186929682|5.78|151.0|7|2|sense MER31A_dup1007|chr12:101908388-101908852:-|1.3570551238417865|0.0247320186929682|5.78|151.0|7|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 434.8022766113281 2 435.247621 868.480688 0.13512 5.8813E-05 3.1787 0.0013835 3.3138 0.0014423 435.24764963599506 60.849 0.05674 64.362 64.327 64.384 3.5129 5 3 2 0 0 0 0.72333 1 13398 13398 5.2307 0 1 21778 23483 15912 14630 14639 27717 27717 0.0411872107695217 LLGRHEEE 8 Unmodified _LLGRHEEE_ 0 0 0 REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 491.75152587890625 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 27.118 1 30.884 30.384 31.384 3.7662 0 0 0 0.40625 1 3984 3984 2.3027 0 1 + 23484 26643 14631 14640 27718 27718 -0.0035259111327832215 LLGRHEEE 8 Unmodified _LLGRHEEE_ 0 0 0 REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 491.7505798339844 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 27.283 1 31.049 30.549 31.549 3.7662 0 0 0 0.40625 1 4034 4034 2.3027 0 1 + 23485 26643 14631 14640 27719 27719 -0.0035259111327832215 LLGRHEEE 8 Unmodified _LLGRHEEE_ 0 0 0 REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 491.7513427734375 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 27.325 1 31.091 30.591 31.591 3.7662 0 0 0 0.40625 1 4046 4046 2.3027 0 1 + 23486 26643 14631 14640 27720 27720 -0.0035259111327832215 LLGRHEEE 8 Unmodified _LLGRHEEE_ 0 0 0 REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense REV__L1MC2_dup2104|chr6:1673383-1674556:-|1.6760908622755728|0.1249613462643862|3.75|151.0|30|2|sense MSMS UPN47_class_I_Rep_3 4 491.7513122558594 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 27.389 1 30.732 30.232 31.232 3.3422 0 0 0 0.40625 1 4150 4150 2.3027 0 1 + 23487 26643 14631 14640 27721 27721 -0.0035259111327832215 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 421.7511291503906 2 421.751393 841.488233 -0.59524 -0.00025105 0.70205 0.00029609 0.1068 4.5045E-05 421.75151940834013 67.562 0.59655 70.754 70.373 70.969 3.1914 62 41 2 0 0 0 0.82752 1 16278 16278 0.69038 0 1 70610 23488 7598 14632 14641 27722 27722 0.06114873397245901 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MSMS UPN48_class_I_Rep_1 5 421.75140380859375 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 80.583 1 84.145 83.645 84.645 3.5624 0 0 0 0.40746 1 19209 19209 0.69038 0 1 23489 7598 14632 14641 27723 27723 0.06114873397245901 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MSMS UPN48_class_I_Rep_3 7 421.7513122558594 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 69.298 1 72.811 72.311 73.311 3.5128 0 0 0 0.40746 1 15953 15953 0.69038 0 1 23490 7598 14632 14641 27724 27724 0.06114873397245901 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 421.751393 841.488233 0.057074 2.4071E-05 -0.42632 -0.0001798 -0.36925 -0.00015573 421.7513036043241 70.729 0.10458 70.729 70.675 70.78 0 -0.19516 -0.00062799 NaN 0.69038 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 51507 23491 7598 14632 14641 0.06114873397245901 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 421.751393 841.488233 -0.5994 -0.0002528 0.6462 0.00027254 0.046808 1.9741E-05 421.7515418442067 67.692 0.22845 70.956 70.862 71.09 3.2636 0.031862 0.00027669 NaN 0.69038 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 60432 23492 7598 14632 14641 0.06114873397245901 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 421.751393 841.488233 0.094489 3.9851E-05 0.066393 2.8001E-05 0.16088 6.7852E-05 421.75125747895595 67.638 0.20839 71.135 71.009 71.218 3.4964 0.21072 -0.00021238 NaN 0.69038 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 72700 23493 7598 14632 14641 0.06114873397245901 LLGRRNGG 8 Unmodified _LLGRRNGG_ 0 0 0 ENST00000588933.5_1_19:9544893-9545835:-|nuORF;ENST00000588221.5_1_19:9530876-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF ENST00000588933.5_1_19:9544893-9545835:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 421.751393 841.488233 0.16254 6.8554E-05 -0.009047 -3.8156E-06 0.1535 6.4738E-05 421.75127348649266 67.539 0.31342 71.047 70.768 71.082 3.5077 0.1229 -0.00027602 NaN 0.69038 38 29 2 NaN NaN NaN NaN 0 NaN NaN 0 71695 23494 7598 14632 14641 0.06114873397245901 LLGSASFFIY 10 Unmodified _LLGSASFFIY_ 0 0 0 ENST00000507640.1_1_5:61763053-61779022:+|nuORF ENST00000507640.1_1_5:61763053-61779022:+|nuORF ENST00000507640.1_1_5:61763053-61779022:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 559.29931640625 2 559.30005 1116.58555 0.4881 0.000273 -0.29696 -0.00016609 0.19115 0.00010691 559.299750953862 73.058 0.58984 76.623 76.356 76.946 3.5645 79 59 2 0 0 0 0.40227 1 17103 17103 19.257 2.1441 1 140180 23495 7163 14633 14642 27725 27725 0.031917977628836525 LLGSFVSPK 9 Unmodified _LLGSFVSPK_ 0 0 0 REV__nc|ENSG00000122126|Q01968-2|OCRL REV__nc|ENSG00000122126|Q01968-2|OCRL MSMS UPN48_class_I_Rep_2 6 474.28216552734375 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.69 1 113.36 112.86 113.86 3.6715 0 0 0 0.38478 1 26120 26120 4.3292 0 1 + 23496 18740 14634 14643 27726 27726 0.07335545936962262 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 626.3941040039062 2 626.392805 1250.77106 0.68683 0.00043022 -1.669 -0.0010455 -0.98222 -0.00061526 626.3942396501711 107.32 0.06041 107.32 107.28 107.34 0 12 7 2 0 0 0 0.59712 1 26176 26176 5.2969 0 1 16071000 + 23497 21712 14635 14644 27727 27727 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 626.3939819335938 2 626.392805 1250.77106 0.68664 0.00043011 2.9642 0.0018567 3.6508 0.0022869 626.3942782538167 107.45 0.1121 107.45 107.41 107.52 0 25 16 2 0 0 0 0.59712 1 26202 26202 5.2969 1.7004 1 18968000 + 23498 21712 14635 14644 27728 27728 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 626.3887329101562 2 626.392805 1250.77106 0.68671 0.00043015 1.14 0.00071409 1.8267 0.0011442 626.3928219063771 107.6 0.089157 107.6 107.52 107.61 0 14 10 2 0 0 0 0.48412 3 26242 26229;26242;26246 8.1555 4.2111 1 21314000 + 23499 21712 14635 14644 27729;27730;27731 27730 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 626.3906860351562 2 626.392805 1250.77106 0.68671 0.00043015 -0.66676 -0.00041765 0.019946 1.2494E-05 626.3920563968235 108 0.36319 108 107.83 108.19 0 44 28 2 0 0 0 0.33678 6 26392 26330;26336;26339;26392;26401;26409 12.241 4.9514 1 10510000 + 23500 21712 14635 14644 27732;27733;27734;27735;27736;27737 27735 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN46_class_I_Rep_3 1 626.391845703125 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 107.66 1 107.66 107.16 108.16 0 0 0 0 0.36307 1 26262 26262 8.1555 4.2111 1 + 23501 21712 14635 14644 27738 27738 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN46_class_I_Rep_3 1 626.388427734375 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 107.73 1 107.73 107.23 108.23 0 0 0 0 0.30011 1 26281 26281 12.241 8.2963 1 + 23502 21712 14635 14644 27739 27739 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN47_class_I_Rep_1 2 626.392822265625 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.16 1 107.92 107.42 108.42 3.7627 0 0 0 0.38417 1 25595 25595 5.2969 2.3016 1 + 23503 21712 14635 14644 27740 27740 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN47_class_I_Rep_1 2 626.3928833007812 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.45 1 108.22 107.72 108.72 3.7627 0 0 0 0.38417 1 25656 25656 5.2969 2.3016 1 + 23504 21712 14635 14644 27741 27741 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN47_class_I_Rep_2 3 626.3934326171875 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.48 1 108 107.5 108.5 3.5289 0 0 0 0.38417 1 25371 25371 5.2969 1.7004 1 + 23505 21712 14635 14644 27742 27742 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN47_class_I_Rep_3 4 626.3922119140625 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.41 1 107.93 107.43 108.43 3.5205 0 0 0 0.38417 1 25594 25594 5.2969 1.7004 1 + 23506 21712 14635 14644 27743 27743 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_2 6 626.3928833007812 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 103.66 1 107.36 106.86 107.86 3.6991 0 0 0 0.35398 1 24535 24535 8.7454 3.4485 1 + 23507 21712 14635 14644 27744 27744 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_2 6 626.386474609375 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 103.79 1 107.49 106.99 107.99 3.6991 0 0 0 0.38417 1 24561 24561 5.2969 1.7004 1 + 23508 21712 14635 14644 27745 27745 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_2 6 626.3935546875 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 103.79 1 107.49 106.99 107.99 3.6991 0 0 0 0.38417 1 24563 24563 5.2969 1.7004 1 + 23509 21712 14635 14644 27746 27746 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_2 6 626.3897705078125 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 103.92 1 107.62 107.12 108.12 3.6991 0 0 0 0.38417 1 24588 24588 5.2969 0 1 + 23510 21712 14635 14644 27747 27747 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_2 6 626.3900146484375 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 104.1 1 107.8 107.3 108.3 3.6991 0 0 0 0.38417 1 24628 24628 5.2969 1.7004 1 + 23511 21712 14635 14644 27748 27748 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MSMS UPN48_class_I_Rep_3 7 626.3921508789062 2 626.392805 1250.77106 NaN NaN NaN NaN NaN NaN NaN 103.85 1 107.59 107.09 108.09 3.7434 0 0 0 0.38417 1 24522 24522 5.2969 0 1 + 23512 21712 14635 14644 27749 27749 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 626.392805 1250.77106 0.68683 0.00043022 -1.669 -0.0010455 -0.98222 -0.00061526 626.3942396501711 107.32 0.06041 107.32 107.28 107.34 0 -0.037665 0.0080951 NaN 5.2969 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 16071000 + 23513 21712 14635 14644 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 626.392805 1250.77106 0.68671 0.00043015 -0.66676 -0.00041765 0.019946 1.2494E-05 626.3920563968235 108 0.36319 108 107.83 108.19 0 0.038547 0.0013303 NaN 12.241 44 28 2 NaN NaN NaN NaN 0 NaN NaN 0 10510000 + 23514 21712 14635 14644 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 626.392805 1250.77106 0.68664 0.00043011 2.9642 0.0018567 3.6508 0.0022869 626.3942782538167 107.45 0.1121 107.45 107.41 107.52 0 -0.018707 0.0002711 NaN 5.2969 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 18968000 + 23515 21712 14635 14644 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 626.392805 1250.77106 0.51231 0.00032091 -5.2741 -0.0033037 -4.7618 -0.0029828 626.3886226581037 104.46 0.024384 107.98 107.97 107.99 3.5205 0.018132 -0.0044418 NaN 12.241 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 16514000 + 23516 21712 14635 14644 0.15570200282309088 LLGSILHDKKK 11 Unmodified _LLGSILHDKKK_ 0 0 0 REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 626.392805 1250.77106 0.51237 0.00032094 1.2272 0.00076871 1.7396 0.0010897 626.3927349754682 103.96 0.025406 107.48 107.47 107.49 3.5205 0.018707 -0.001905 NaN 5.2969 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 22654000 + 23517 21712 14635 14644 0.15570200282309088 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_3 4 456.3013610839844 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 30.554 1 33.865 33.365 34.365 3.3116 0 0 0 0.39598 1 5088 5088 1.6526 0 1 + 23518 27939 14636 14645 27750 27750 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_1 5 456.3010559082031 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.066 1 43.57 43.07 44.07 3.5048 0 0 0 0.39598 1 7147 7147 1.6526 0 1 + 23519 27939 14636 14645 27751 27751 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_1 5 456.30078125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 48.055 1 51.576 51.076 52.076 3.5219 0 0 0 0.39598 1 9563 9563 1.6526 0 1 + 23520 27939 14636 14645 27752 27752 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_1 5 456.30096435546875 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 49.118 1 52.642 52.142 53.142 3.5239 0 0 0 0.39598 1 9891 9891 1.6526 0 1 + 23521 27939 14636 14645 27753 27753 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 456.3011474609375 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 31.38 1 35.021 34.521 35.521 3.641 0 0 0 0.39598 1 4713 4713 1.6526 0 1 + 23522 27939 14636 14645 27754 27754 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 456.3013916015625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 39.666 1 43.395 42.895 43.895 3.7297 0 0 0 0.39598 1 7063 7063 1.6526 0 1 + 23523 27939 14636 14645 27755 27755 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 456.3011779785156 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.229 1 50.979 50.479 51.479 3.7494 0 0 0 0.39598 1 9312 9312 1.6526 0 1 + 23524 27939 14636 14645 27756 27756 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_3 7 456.30120849609375 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.235 1 50.871 50.371 51.371 3.6363 0 0 0 0.38784 1 9251 9251 3.5965 0.31518 1 + 23525 27939 14636 14645 27757 27757 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_3 7 456.3013916015625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.556 1 51.19 50.69 51.69 3.6339 0 0 0 0.39598 1 9344 9344 1.6526 0 1 + 23526 27939 14636 14645 27758 27758 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_3 7 456.3015441894531 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.884 1 51.518 51.018 52.018 3.6339 0 0 0 0.39598 1 9444 9444 1.6526 0 1 + 23527 27939 14636 14645 27759 27759 0.1262842283366581 LLGSLAIKP 9 Unmodified _LLGSLAIKP_ 0 0 0 REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense REV__L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_3 7 456.30084228515625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 48.04 1 51.674 51.174 52.174 3.6339 0 0 0 0.39598 1 9493 9493 1.6526 0 1 + 23528 27939 14636 14645 27760 27760 0.1262842283366581 LLGSSLVALL 10 Unmodified _LLGSSLVALL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS UPN48_class_I_Rep_1 5 493.3182067871094 2 493.318243 984.621933 0.21228 0.00010472 -0.048337 -2.3846E-05 0.16394 8.0877E-05 493.31816559283703 69.671 0.92643 73.126 72.785 73.711 3.4548 195 71 3 0 0 0 0.33585 1 16142 16142 25.399 1.3787 1 1246800 23529 1941 14637 14646 27761 27761 0.12900674659567812 LLGSSLVALL 10 Unmodified _LLGSSLVALL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS UPN48_class_I_Rep_2 6 493.31829833984375 2 493.318243 984.621933 0.26966 0.00013303 0.0072945 3.5985E-06 0.27696 0.00013663 493.31816554953997 69.548 1.0931 73.069 72.684 73.777 3.5216 230 93 4 0 0 0 0.33585 1 16089 16089 25.399 1.3787 1 1458100 23530 1941 14637 14646 27762 27762 0.12900674659567812 LLGSSLVALL 10 Unmodified _LLGSSLVALL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS UPN48_class_I_Rep_3 7 493.3183288574219 2 493.318243 984.621933 0.30684 0.00015137 -0.068695 -3.3889E-05 0.23815 0.00011748 493.3181397323839 69.531 1.1333 73.044 72.584 73.717 3.5128 208 89 4 0 0 0 0.23621 1 16016 16016 39.957 1.7818 1 1634300 23531 1941 14637 14646 27763 27763 0.12900674659567812 LLGTDHFIYY 10 Unmodified _LLGTDHFIYY_ 0 0 0 L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 621.31396484375 2 621.313689 1240.61282 0.453 0.00028146 -0.081918 -5.0897E-05 0.37108 0.00023056 621.3135561261183 60.74 2.0742 64.121 63.699 65.774 3.3815 492 169 4 0 0 0 0.38932 3 14528 14528;14645;14666 20.454 1.1966 1 4380800 23532 9004 14638 14647 27764;27765;27766 27764 0.0021428130326057726 LLGTDHFIYY 10 Unmodified _LLGTDHFIYY_ 0 0 0 L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense MSMS UPN47_class_I_Rep_1 2 621.313720703125 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 62.752 1 66.111 65.611 66.611 3.3595 0 0 0 0.53105 1 14806 14806 10.074 0 1 23533 9004 14638 14647 27767 27767 0.0021428130326057726 LLGTDHFIYY 10 Unmodified _LLGTDHFIYY_ 0 0 0 L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 621.3142700195312 2 621.313689 1240.61282 0.47043 0.00029229 -0.1193 -7.4123E-05 0.35113 0.00021816 621.3135156800772 60.972 2.3501 64.237 63.8 66.15 3.2654 528 174 5 0 0 0 0.38932 1 14653 14653 20.454 1.1966 1 4187000 23534 9004 14638 14647 27768 27768 0.0021428130326057726 LLGTDHFIYY 10 Unmodified _LLGTDHFIYY_ 0 0 0 L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense MSMS UPN47_class_I_Rep_2 3 621.313232421875 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 63.039 1 66.295 65.795 66.795 3.2558 0 0 0 0.53105 1 14929 14929 14.838 0 1 23535 9004 14638 14647 27769 27769 0.0021428130326057726 LLGTDHFIYY 10 Unmodified _LLGTDHFIYY_ 0 0 0 L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 621.3137817382812 2 621.313689 1240.61282 0.39001 0.00024232 -0.061047 -3.793E-05 0.32896 0.00020439 621.3135651502976 61.103 2.5251 64.268 63.769 66.294 3.1651 496 188 4 0 0 0 0.51565 1 14742 14742 10.074 0.6908 1 4879800 23536 9004 14638 14647 27770 27770 0.0021428130326057726 LLGTDHFIYY 10 Unmodified _LLGTDHFIYY_ 0 0 0 L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense L1M4b_dup3230|chr12:45767952-45769972:+|2.506289659214281|0.0656200126522999|5.26|151.0|125|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 621.3145751953125 2 621.313689 1240.61282 0.42624 0.00026483 -0.36931 -0.00022946 0.056926 3.5369E-05 621.3134026218887 63.29 0.32837 66.46 66.299 66.627 3.1698 32 23 2 0 0 0 0.84575 1 15036 15036 10.074 0.6908 1 86214 23537 9004 14638 14647 27771 27771 0.0021428130326057726 LLGTHKRH 8 Unmodified _LLGTHKRH_ 0 0 0 REV__MER39_dup2277|chr10:103122675-103123085:+|1.871164615685307|0.0225580353966066|6.37|151.0|12|3|sense REV__MER39_dup2277|chr10:103122675-103123085:+|1.871164615685307|0.0225580353966066|6.37|151.0|12|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 481.3371276855469 2 481.288143 960.561733 0.18851 9.0729E-05 1.159 0.00055784 1.3476 0.00064857 481.29078056999066 62.247 0.078388 65.506 65.441 65.52 3.2594 7 5 2 0 0 0 0.72333 1 14687 14687 0.79363 0 1 17284 + 23538 31273 14639 14648 27772 27772 0.07987421839709441 LLGVLDSDI 9 Unmodified _LLGVLDSDI_ 0 0 0 nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;ENST00000485551.5_1_1:35906621-35936502:-|nuORF;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L nc|ENSG00000142687|Q8IZA0-3|KIAA0319L nc|ENSG00000142687|Q8IZA0-3|KIAA0319L MSMS UPN46_class_I_Rep_3 1 472.7503356933594 2 472.768583 943.522613 NaN NaN NaN NaN NaN NaN NaN 87.318 1 87.318 86.818 87.818 0 0 0 0 0.39428 1 20915 20915 2.0598 0 1 23539 3261 14640 14649 27773 27773 0.04859231974819522 LLGVLRCDRV 10 Unmodified _LLGVLRCDRV_ 0 0 0 REV__nc|ENSG00000240038|P19961-2|AMY2B REV__nc|ENSG00000240038|P19961-2|AMY2B MSMS UPN48_class_I_Rep_1 5 572.3355712890625 2 572.336975 1142.6594 NaN NaN NaN NaN NaN NaN NaN 60.562 1 64.036 63.536 64.536 3.4737 0 0 0 0.53105 1 13407 13407 2.9952 0.93549 1 + + 23540 17495 14641 14650 27774 27774 0.09377442653521939 LLGVRLVVIH 10 Unmodified _LLGVRLVVIH_ 0 0 0 L1MCb_dup339|chr3:25747628-25748542:+|3.4312607016250003|0.2121752120994932|4.02|151.0|58|3|anti-sense L1MCb_dup339|chr3:25747628-25748542:+|3.4312607016250003|0.2121752120994932|4.02|151.0|58|3|anti-sense L1MCb_dup339|chr3:25747628-25748542:+|3.4312607016250003|0.2121752120994932|4.02|151.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 559.392578125 2 559.874051 1117.73355 0.63488 0.00035545 0.98429 0.00055108 1.6192 0.00090653 559.8747997638915 108.14 0.039207 111.67 111.66 111.7 3.5333 6 3 2 0 0 0 0.84575 1 26207 26207 0.45834 0 1 257520 23541 11852 14642 14651 27775 27775 0.17939153807378716 LLGVVPTYGFY 11 Unmodified _LLGVVPTYGFY_ 0 0 0 REV__L1MA7_dup1368|chr3:87840279-87841234:+|2.0711253742146982|0.0061013185843564|8.41|129.0|60|3|anti-sense REV__L1MA7_dup1368|chr3:87840279-87841234:+|2.0711253742146982|0.0061013185843564|8.41|129.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 614.8340454101562 2 614.834257 1227.65396 0.45938 0.00028244 -0.23265 -0.00014304 0.22673 0.0001394 614.8340326454711 73.144 0.65605 76.371 76.077 76.734 3.2271 125 56 3 0 0 0 0.27364 1 17991 17991 18.146 0 1 162660 + 23542 25495 14643 14652 27776 27776 0.04924042342713619 LLGWLLYW 8 Unmodified _LLGWLLYW_ 0 0 0 REV__HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|287|1|anti-sense REV__HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|287|1|anti-sense MSMS UPN47_class_I_Rep_3 4 532.3045043945312 2 532.302396 1062.59024 NaN NaN NaN NaN NaN NaN NaN 52.556 1 55.761 55.261 56.261 3.2055 0 0 0 0.37152 1 11788 11788 17.087 1.8381 1 + 23543 23786 14644 14653 27777 27777 0.061447266962886715 LLHAEDHA 8 Unmodified _LLHAEDHA_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MSMS UPN47_class_I_Rep_2 3 453.2261047363281 2 453.227417 904.44028 NaN NaN NaN NaN NaN NaN NaN 32.645 1 36.1 35.6 36.6 3.4547 0 0 0 0.40738 1 5682 5682 0.79363 0 1 23544 4133 14645 14654 27778 27778 -0.015762453134925636 LLHATTWI 8 Unmodified _LLHATTWI_ 0 0 0 L1MB8_dup6632|chr7:105354741-105355186:-|1.1082321957937833|0.0154118021997576|6.17|150.0|8|2|sense L1MB8_dup6632|chr7:105354741-105355186:-|1.1082321957937833|0.0154118021997576|6.17|150.0|8|2|sense L1MB8_dup6632|chr7:105354741-105355186:-|1.1082321957937833|0.0154118021997576|6.17|150.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 477.7727966308594 2 477.774003 953.533452 0.00017704 8.4584E-08 -0.12863 -6.1455E-05 -0.12845 -6.137E-05 477.7738722078921 61.249 0.5212 64.414 64.295 64.816 3.1651 61 41 2 0 0 0 0.82752 1 14534 14534 9.3474 0 1 141180 23545 11025 14646 14655 27779 27779 0.054826791397545094 LLHCKLIK 8 Unmodified _LLHCKLIK_ 0 0 0 REV__L1MEg_dup11849|chr14:89596437-89598448:-|3.457771876212445|0.0185620289076211|7.54|151.0|78|3|sense REV__L1MEg_dup11849|chr14:89596437-89598448:-|3.457771876212445|0.0185620289076211|7.54|151.0|78|3|sense MSMS UPN47_class_I_Rep_1 2 483.9810485839844 2 484.309698 966.604843 NaN NaN NaN NaN NaN NaN NaN 88.436 1 92.092 91.592 92.592 3.6563 0 0 0 0.40738 1 22117 22117 0.79363 0 1 + 23546 28718 14647 14656 27780 27780 0.12020475572774103 LLHCLRRVR 9 Unmodified _LLHCLRRVR_ 0 0 0 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 MSMS UPN48_class_I_Rep_1 5 583.3563232421875 2 583.358576 1164.7026 NaN NaN NaN NaN NaN NaN NaN 28.827 1 32.377 31.877 32.877 3.5499 0 0 0 0.40038 1 3916 3916 0.6015 0 1 + 23547 18486 14648 14657 27781 27781 0.12683677221480139 LLHEQVPIE 9 Unmodified _LLHEQVPIE_ 0 0 0 REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-SECPEP UPN47_class_I_Rep_3 4 538.7991943359375 2 539.300581 1076.58661 0.45138 0.00024343 0.056175 3.0295E-05 0.50756 0.00027373 539.3007886290736 80.816 0.28191 84.125 83.98 84.262 3.309 46 34 2 0 0 0 0.12235 1 20223 20223 4.756 0 1 298950 + 23548 18084 14649 14658 27782 27782 0.05138012131783398 LLHESDGVL 9 Unmodified _LLHESDGVL_ 0 0 0 nc|ENSG00000130338|Q9NRJ4-2|TULP4;ENSG00000130338|ENST00000367097|TULP4 nc|ENSG00000130338|Q9NRJ4-2|TULP4 nc|ENSG00000130338|Q9NRJ4-2|TULP4 MULTI-MSMS UPN48_class_I_Rep_1 5 491.76385498046875 2 491.763832 981.513111 0.16413 8.0715E-05 -0.42412 -0.00020857 -0.25999 -0.00012785 491.76350549028245 44.589 0.65582 48.102 47.848 48.503 3.5132 59 45 2 0 0 0 0.33654 2 8519 8519;8557 11.64 0 1 190250 23549 2655 14650 14659 27783;27784 27783 0.02161463689287757 LLHESDGVL 9 Unmodified _LLHESDGVL_ 0 0 0 nc|ENSG00000130338|Q9NRJ4-2|TULP4;ENSG00000130338|ENST00000367097|TULP4 nc|ENSG00000130338|Q9NRJ4-2|TULP4 nc|ENSG00000130338|Q9NRJ4-2|TULP4 MULTI-MSMS UPN48_class_I_Rep_3 7 491.7637634277344 2 491.763832 981.513111 0.16213 7.973E-05 -0.36199 -0.00017801 -0.19986 -9.8285E-05 491.7635918057994 44.514 0.62819 48.151 47.84 48.469 3.6372 78 45 2 0 0 0 0.41259 1 8392 8392 7.2892 0 1 202970 23550 2655 14650 14659 27785 27785 0.02161463689287757 LLHFHIIFR 9 Unmodified _LLHFHIIFR_ 0 0 0 L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 598.3582763671875 2 598.358568 1194.70258 0.30645 0.00018337 -1.0577 -0.00063288 -0.75124 -0.00044951 598.3579233069779 52.071 0.39419 55.63 55.294 55.689 3.5585 47 26 2 0 0 0 0.48414 2 11490 11490;11533 2.3027 0 1 114260 23551 12680 14651 14660 27786;27787 27786 0.11302000493105879 LLHFHIIFR 9 Unmodified _LLHFHIIFR_ 0 0 0 L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.3583984375 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 53.189 1 56.717 56.217 57.217 3.5278 0 0 0 0.39326 1 11896 11896 2.3027 0 1 23552 12680 14651 14660 27788 27788 0.11302000493105879 LLHFHIIFR 9 Unmodified _LLHFHIIFR_ 0 0 0 L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 598.8594360351562 2 598.358568 1194.70258 0.48424 0.00028975 -1.4067 -0.00084173 -0.92249 -0.00055198 598.3575658971765 53.473 0.42701 56.668 56.47 56.897 3.1948 42 25 2 0 0 0 0.48414 2 12031 12031;12075 2.3027 0 1 98300 23553 12680 14651 14660 27789;27790 27789 0.11302000493105879 LLHFHIIFR 9 Unmodified _LLHFHIIFR_ 0 0 0 L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_3 4 598.358154296875 2 598.358568 1194.70258 NaN NaN NaN NaN NaN NaN NaN 52.563 1 55.769 55.269 56.269 3.2055 0 0 0 0.40038 1 11790 11790 0.6015 0 1 23554 12680 14651 14660 27791 27791 0.11302000493105879 LLHFTSSLIT 10 Unmodified _LLHFTSSLIT_ 0 0 0 REV__L1ME4c_dup1396|chr2:233139054-233139254:+|1.663486925999609|0.0072646140092714|7.84|151.0|13|1|anti-sense REV__L1ME4c_dup1396|chr2:233139054-233139254:+|1.663486925999609|0.0072646140092714|7.84|151.0|13|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 566.2745361328125 2 566.324057 1130.63356 0.56838 0.00032189 -0.079453 -4.4996E-05 0.48893 0.00027689 566.8256696164707 53.807 0.49294 57.388 57.116 57.609 3.5817 51 36 2 0 0 0 0.84575 1 11361 11361 3.5965 0 1 109330 + 23555 28313 14652 14661 27792 27792 0.07346871682921119 LLHFYVCLP 9 Unmodified _LLHFYVCLP_ 0 0 0 Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 552.7992553710938 2 552.799163 1103.58377 NaN NaN NaN NaN NaN NaN NaN 63.554 1 67.012 66.512 67.512 3.4578 0 0 0 0.39326 1 14317 14317 2.3027 0.4585 1 23556 33296 14653 14662 27793 27793 0.03612465473247539 LLHGMKYV 8 Unmodified _LLHGMKYV_ 0 0 0 REV__L1ME4b_dup17009|chr15:32170868-32171773:-|1.1470090199215|0.2240809488281186|2.36|150.0|66|3|anti-sense REV__L1ME4b_dup17009|chr15:32170868-32171773:-|1.1470090199215|0.2240809488281186|2.36|150.0|66|3|anti-sense MSMS UPN48_class_I_Rep_3 7 480.7704772949219 2 480.770406 959.526258 NaN NaN NaN NaN NaN NaN NaN 21.51 1 25.224 24.724 25.724 3.7144 0 0 0 0.40738 1 2033 2033 0.79363 0 1 + 23557 28265 14654 14663 27794 27794 0.044876232676756445 LLHHLGLLCA 10 Unmodified _LLHHLGLLCA_ 0 0 0 ENST00000339381.5_1_1:1268919-1269807:+|nuORF ENST00000339381.5_1_1:1268919-1269807:+|nuORF ENST00000339381.5_1_1:1268919-1269807:+|nuORF MSMS UPN48_class_I_Rep_3 7 545.3162841796875 2 545.315512 1088.61647 NaN NaN NaN NaN NaN NaN NaN 79.542 1 83.184 82.684 83.684 3.6423 0 0 0 0.53105 1 18861 18861 1.8442 0 1 23558 6223 14655 14664 27795 27795 0.07570672596102668 LLHHLYRR 8 Unmodified _LLHHLYRR_ 0 0 0 REV__nc|ENSG00000180694|Q6YI46-4|TMEM64 REV__nc|ENSG00000180694|Q6YI46-4|TMEM64 MULTI-SECPEP UPN47_class_I_Rep_2 3 553.8298950195312 2 554.330342 1106.64613 0.49864 0.00027641 2.2862 0.0012673 2.7849 0.0015438 554.833037193096 79.89 0.11503 83.259 83.211 83.326 3.3694 18 13 2 0 0 0 0.72333 1 19907 19907 0.79363 0 1 96780 + 23559 20711 14656 14665 27796 27796 0.09707372656453117 LLHHNCHALI 10 Unmodified _LLHHNCHALI_ 0 0 0 REV__AluSz6_dup26606|chr10:920492-920793:+|1.524544864957906|0.0263239004922597|5.86|151.0|19|3|anti-sense REV__AluSz6_dup26606|chr10:920492-920793:+|1.524544864957906|0.0263239004922597|5.86|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_3 7 585.8139038085938 2 585.813667 1169.61278 NaN NaN NaN NaN NaN NaN NaN 76.982 1 80.583 80.083 81.083 3.6016 0 0 0 0.53105 1 18156 18156 6.7232 0 1 + 23560 17229 14657 14666 27797 27797 0.03476002822230839 LLHICTPR 8 Unmodified _LLHICTPR_ 0 0 0 REV__ENSG00000008513.16,ST3GAL1,chr8,-,I9.1,133488440,133489537|35|10.53|1|intron REV__ENSG00000008513.16,ST3GAL1,chr8,-,I9.1,133488440,133489537|35|10.53|1|intron MSMS UPN48_class_I_Rep_1 5 476.4891662597656 2 476.77348 951.532406 NaN NaN NaN NaN NaN NaN NaN 26.72 1 30.283 29.783 30.783 3.5629 0 0 0 0.40738 1 3328 3328 0.79363 0 1 + 23561 17555 14658 14667 27798 27798 0.054701414992109676 LLHKDLKI 8 Unmodified _LLHKDLKI_ 0 0 0 L1MB8_dup2432|chr3:138673723-138674773:+|2.134638593678748|0.0354414764651927|5.91|151.0|26|2|sense L1MB8_dup2432|chr3:138673723-138674773:+|2.134638593678748|0.0354414764651927|5.91|151.0|26|2|sense L1MB8_dup2432|chr3:138673723-138674773:+|2.134638593678748|0.0354414764651927|5.91|151.0|26|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 490.8190002441406 2 490.318577 978.622602 -0.48258 -0.00023662 -0.65927 -0.00032325 -1.1418 -0.00055987 490.31860983310435 26.786 0.067362 30.128 30.098 30.165 3.3422 6 5 2 0 0 0 0.72333 1 3974 3974 0.6015 0 1 19002 23562 10977 14659 14668 27799 27799 0.1324351409925839 LLHKRAAR 8 Unmodified _LLHKRAAR_ 0 0 0 L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|74|3|sense L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|74|3|sense L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|74|3|sense MSMS UPN47_class_I_Rep_1 2 482.810302734375 2 482.811785 963.609017 NaN NaN NaN NaN NaN NaN NaN 28.025 1 31.791 31.291 32.291 3.7662 0 0 0 0.40746 1 4257 4257 0.69038 0 1 23563 13592 14660 14669 27800 27800 0.12575701110688442 LLHKRTAI 8 Unmodified _LLHKRTAI_ 0 0 0 ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1 ENST00000428632.7_1_12:113682520-113726187:+|nuORF ENST00000428632.7_1_12:113682520-113726187:+|nuORF MSMS UPN47_class_I_Rep_2 3 476.3206787109375 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 61.378 1 64.643 64.143 65.143 3.2654 0 0 0 0.4032 1 14424 14424 6.3541 0 1 23564 5165 14661 14670 27801 27801 0.12525763159305825 LLHLFFLF 8 Unmodified _LLHLFFLF_ 0 0 0 REV__L1MEg_dup10733|chr12:105134051-105135669:-|1.0455658301672688|0.0695870739376053|3.91|150.0|124|3|anti-sense REV__L1MEg_dup10733|chr12:105134051-105135669:-|1.0455658301672688|0.0695870739376053|3.91|150.0|124|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.3126220703125 2 525.312764 1048.61097 0.49009 0.00025745 -1.5863 -0.00083329 -1.0962 -0.00057584 525.3118652700048 74.881 0.27785 78.447 78.241 78.519 3.5658 56 27 3 0 0 0 0.82752 1 17535 17535 11.114 0 1 437560 + 23565 28713 14662 14671 27802 27802 0.08861317075911757 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.81182861328125 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 66.331 1 69.688 69.188 70.188 3.3576 0 0 0 0.40738 1 15882 15882 0.79363 0 1 23566 4388 14663 14672 27803 27803 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.81195068359375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 76.88 1 80.295 79.795 80.795 3.4149 0 0 0 0.40738 1 19046 19046 0.79363 0 1 23567 4388 14663 14672 27804 27804 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.8116149902344 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 78.425 1 81.871 81.371 82.371 3.4456 0 0 0 0.40738 1 19498 19498 0.79363 0 1 23568 4388 14663 14672 27805 27805 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8102111816406 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 69.021 1 72.297 71.797 72.797 3.2761 0 0 0 0.40738 1 16738 16738 0.79363 0 1 23569 4388 14663 14672 27806 27806 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 72.528 1 75.825 75.325 76.325 3.2971 0 0 0 0.40746 1 17783 17783 0.69038 0 1 23570 4388 14663 14672 27807 27807 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8116149902344 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 76.335 1 79.656 79.156 80.156 3.3216 0 0 0 0.40581 1 18892 18892 2.8892 0 1 23571 4388 14663 14672 27808 27808 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8120422363281 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 79.656 1 83.012 82.512 83.512 3.3554 0 0 0 0.40738 1 19837 19837 0.79363 0 1 23572 4388 14663 14672 27809 27809 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_3 4 485.8111572265625 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 50.043 1 53.27 52.77 53.77 3.2262 0 0 0 0.40738 1 11021 11021 0.79363 0 1 23573 4388 14663 14672 27810 27810 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN47_class_I_Rep_3 4 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 113.35 1 116.86 116.36 117.36 3.5098 0 0 0 0.40738 1 27802 27802 0.79363 0 1 23574 4388 14663 14672 27811 27811 0.12634951164693575 LLHLLKHP 8 Unmodified _LLHLLKHP_ 0 0 0 ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 ENST00000465224.5_1_2:97490916-97493694:+|nuORF ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.8122253417969 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 113.8 1 117.43 116.93 117.93 3.6314 0 0 0 0.40738 1 27653 27653 0.79363 0 1 23575 4388 14663 14672 27812 27812 0.12634951164693575 LLHLLVKESIR 11 Unmodified _LLHLLVKESIR_ 0 0 0 REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN48_class_I_Rep_1 5 440.79931640625 3 440.950245 1319.82891 NaN NaN NaN NaN NaN NaN NaN 65.638 1 69.089 68.589 69.589 3.4516 0 0 0 0.38417 1 14948 14948 0.50596 0.09769 1 + 23576 20280 14664 14673 27813 27813 0.18178462207742996 LLHLLVKESIR 11 Unmodified _LLHLLVKESIR_ 0 0 0 REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF MSMS UPN48_class_I_Rep_3 7 440.7994079589844 3 440.950245 1319.82891 NaN NaN NaN NaN NaN NaN NaN 65.568 1 69.075 68.575 69.575 3.5077 0 0 0 0.38417 1 14828 14828 0.50596 0.34663 1 + 23577 20280 14664 14673 27814 27814 0.18178462207742996 LLHLQQLFY 9 Unmodified _LLHLQQLFY_ 0 0 0 Charlie15a_dup4|chr1:8869875-8870073:+|1.528010056528732|0.4614488655623494|1.73|151.0|7|3|sense Charlie15a_dup4|chr1:8869875-8870073:+|1.528010056528732|0.4614488655623494|1.73|151.0|7|3|sense Charlie15a_dup4|chr1:8869875-8870073:+|1.528010056528732|0.4614488655623494|1.73|151.0|7|3|sense MSMS UPN47_class_I_Rep_2 3 587.8353881835938 2 587.834591 1173.65463 NaN NaN NaN NaN NaN NaN NaN 67.206 1 70.469 69.969 70.969 3.2636 0 0 0 0.38478 1 16194 16194 4.3292 0 1 23578 446 14665 14674 27815 27815 0.07474881782400189 LLHLRRTGQ 9 Unmodified _LLHLRRTGQ_ 0 0 0 ENST00000400454.5_1_21:41414428-41416141:-|nuORF ENST00000400454.5_1_21:41414428-41416141:-|nuORF ENST00000400454.5_1_21:41414428-41416141:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.3328857421875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 113.23 1 116.74 116.24 117.24 3.5098 0 0 0 0.40098 1 27767 27767 0.45834 0 1 23579 6593 14666 14675 27816 27816 0.10899051448268438 LLHLTSRL 8 Unmodified _LLHLTSRL_ 0 0 0 ENST00000529704.5_1_11:67119161-67119332:-|nuORF ENST00000529704.5_1_11:67119161-67119332:-|nuORF ENST00000529704.5_1_11:67119161-67119332:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.80029296875 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 111.78 1 111.78 111.28 112.28 0 0 0 0 0.40404 1 27572 27572 5.2307 0 1 23580 7288 14667 14676 27817 27817 0.10882056922412175 LLHMKFTY 8 Unmodified _LLHMKFTY_ 0 0 0 REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335 REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335 MULTI-SECPEP UPN46_class_I_Rep_3 1 526.2938232421875 2 526.783513 1051.55247 0.26946 0.00014195 1.1731 0.00061796 1.4425 0.00075991 526.7848139615035 51.844 0.093849 51.844 51.797 51.891 0 14 11 2 0 0 0 0.72333 1 11048 11048 7.9102 0 1 76859 + 23581 21107 14668 14677 27818 27818 0.028758924391695473 LLHQIVNQ 8 Unmodified _LLHQIVNQ_ 0 0 0 Tigger1_dup8646|chr11:67199079-67200217:+|3.596785278835748|0.0945155628287688|5.25|151.0|2|1|sense Tigger1_dup8646|chr11:67199079-67200217:+|3.596785278835748|0.0945155628287688|5.25|151.0|2|1|sense Tigger1_dup8646|chr11:67199079-67200217:+|3.596785278835748|0.0945155628287688|5.25|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 482.739990234375 2 482.782359 963.550165 NaN NaN NaN NaN NaN NaN NaN 31.965 1 35.264 34.764 35.764 3.2991 0 0 0 0.40625 1 5515 5515 2.3027 0 1 23582 33201 14669 14678 27819 27819 0.06693180025706624 LLHQPQHWPG 10 Unmodified _LLHQPQHWPG_ 0 0 0 REV__ENST00000360814.8_1_12:104387270-104390561:-|nuORF REV__ENST00000360814.8_1_12:104387270-104390561:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 405.2132873535156 3 404.880602 1211.61998 -0.11855 -4.7999E-05 -1.4601 -0.00059119 -1.5787 -0.00063919 405.2139405671408 40.201 0.28819 43.706 43.51 43.798 3.5048 25 20 2 0 0 0 0.56273 1 7181 7181 1.9064 0.1641 1 58672 + 23583 21898 14670 14679 27820 27820 0.022630586943023445 LLHRPDRR 8 Unmodified _LLHRPDRR_ 0 0 0 HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|176|2|anti-sense HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|176|2|anti-sense HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|176|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 531.8170776367188 2 531.817599 1061.62064 0.42511 0.00022608 -0.7301 -0.00038828 -0.30499 -0.0001622 532.3186513710489 77.309 0.55206 80.921 80.639 81.191 3.6116 123 53 3 0 0 0 0.82752 1 18348 18348 2.3027 0 1 166880 23584 8344 14671 14680 27821 27821 0.09229898134026371 LLHRPWGF 8 Unmodified _LLHRPWGF_ 0 0 0 LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.28662109375 2 513.287611 1024.56067 0.23751 0.00012191 -1.3133 -0.00067412 -1.0758 -0.00055221 513.2869257034386 49.654 0.52487 53.179 52.96 53.485 3.5246 41 32 2 0 0 0 0.82752 1 10053 10053 10.183 10.183 1 83711 23585 15692 14672 14681 27822 27822 0.049372074707889624 LLHRPWGF 8 Unmodified _LLHRPWGF_ 0 0 0 LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.7880249023438 2 513.287611 1024.56067 0.21472 0.00011021 -1.5547 -0.00079802 -1.34 -0.00068781 513.2868156686156 49.642 0.53752 53.271 52.989 53.526 3.6291 49 33 2 0 0 0 0.82752 2 9974 9974;9996 10.183 10.183 1 85910 23586 15692 14672 14681 27823;27824 27823 0.049372074707889624 LLHRPWGF 8 Unmodified _LLHRPWGF_ 0 0 0 LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense LTR64_dup105|chr5:76870112-76870629:+|1.2603254916614766|0.0038559558493129|8.35|147.0|28|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 513.7880249023438 2 513.287611 1024.56067 0.21472 0.00011021 -1.5547 -0.00079802 -1.34 -0.00068781 513.2868156686156 49.642 0.53752 53.271 52.989 53.526 3.6291 49 33 2 0 0 0 0.72333 1 9974 9974 10.183 10.183 1 85910 23587 15692 14672 14681 27825 27825 0.049372074707889624 LLHSKRNRV 9 Unmodified _LLHSKRNRV_ 0 0 0 L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|12|1|sense L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|12|1|sense L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.845947265625 2 561.846356 1121.67816 0.49246 0.00027669 -1.1207 -0.00062966 -0.62824 -0.00035297 561.8456472188118 87.787 0.24552 91.515 91.456 91.701 3.7279 35 27 2 0 0 0 0.50088 1 20935 20935 0.52476 0 1 138990 23588 14088 14673 14682 27826 27826 0.12218740339585565 LLHTESEL 8 Unmodified _LLHTESEL_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|40|2|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|40|2|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|40|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 471.79583740234375 2 471.250557 940.486562 0.07269 3.4255E-05 0.099058 4.6681E-05 0.17175 8.0937E-05 471.2505416879214 48.154 0.57495 51.676 51.559 52.134 3.5219 42 36 2 0 0 0 0.72333 1 9576 9576 5.2307 0 1 76931 23589 7714 14674 14683 27827 27827 0.013937747979525739 LLHTQADL 8 Unmodified _LLHTQADL_ 0 0 0 L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|27|2|sense;L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|92|2|sense;L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|29|2|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|27|2|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 455.2681579589844 2 455.753267 909.491981 NaN NaN NaN NaN NaN NaN NaN 116.35 1 120.01 119.51 120.51 3.6607 0 0 0 0.40738 1 27870 27870 0.79363 0 1 23590 12302 14675 14684 27828 27828 0.033614983804000076 LLHTSPALAY 10 Unmodified _LLHTSPALAY_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|286|1|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|286|1|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|286|1|anti-sense MSMS UPN46_class_I_Rep_3 1 543.302001953125 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 61.497 1 61.497 60.997 61.997 0 0 0 0 0.53105 1 13690 13690 11.64 3.047 1 23591 8034 14676 14685 27829 27829 0.05278315994360128 LLHVAAHL 8 Unmodified _LLHVAAHL_ 0 0 0 MER21C_dup1242|chr3:197691863-197692626:+|1.189998990316111|0.3042186211918596|1.97|151.0|14|2|sense MER21C_dup1242|chr3:197691863-197692626:+|1.189998990316111|0.3042186211918596|1.97|151.0|14|2|sense MER21C_dup1242|chr3:197691863-197692626:+|1.189998990316111|0.3042186211918596|1.97|151.0|14|2|sense MSMS UPN47_class_I_Rep_2 3 437.2684326171875 2 437.268887 872.523222 NaN NaN NaN NaN NaN NaN NaN 53.835 1 57.155 56.655 57.655 3.3197 0 0 0 0.40738 1 12122 12122 0.79363 0 1 23592 15883 14677 14686 27830 27830 0.08186116205160943 LLHVFPLTLW 10 Unmodified _LLHVFPLTLW_ 0 0 0 L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|65|3|anti-sense L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|65|3|anti-sense L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 619.8694458007812 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 97.51 1 100.99 100.49 101.49 3.4836 0 0 0 0.53105 1 23934 23934 1.6526 0.17072 1 23593 12173 14678 14687 27831 27831 0.11296331713219843 LLHVILRVGN 10 Unmodified _LLHVILRVGN_ 0 0 0 ENST00000262848.5_1_X:3524141-3524384:-|nuORF ENST00000262848.5_1_X:3524141-3524384:-|nuORF ENST00000262848.5_1_X:3524141-3524384:-|nuORF MSMS UPN48_class_I_Rep_2 6 567.36376953125 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 32.983 1 36.633 36.133 37.133 3.6497 0 0 0 0.53105 1 5158 5158 1.4819 0.79152 1 23594 5974 14679 14688 27832 27832 0.14701679284939928 LLHVILRVGN 10 Unmodified _LLHVILRVGN_ 0 0 0 ENST00000262848.5_1_X:3524141-3524384:-|nuORF ENST00000262848.5_1_X:3524141-3524384:-|nuORF ENST00000262848.5_1_X:3524141-3524384:-|nuORF MSMS UPN48_class_I_Rep_3 7 567.3646240234375 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 46.269 1 49.905 49.405 50.405 3.6369 0 0 0 0.53105 1 8953 8953 1.4819 0.8804 1 23595 5974 14679 14688 27833 27833 0.14701679284939928 LLHVLITIT 9 Unmodified _LLHVLITIT_ 0 0 0 L1M4_dup16829|chr15:64552949-64553589:-|1.904680175942215|0.0051744221814529|8.52|151.0|34|2|anti-sense L1M4_dup16829|chr15:64552949-64553589:-|1.904680175942215|0.0051744221814529|8.52|151.0|34|2|anti-sense L1M4_dup16829|chr15:64552949-64553589:-|1.904680175942215|0.0051744221814529|8.52|151.0|34|2|anti-sense MSMS UPN46_class_I_Rep_3 1 511.8329772949219 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 28.669 1 28.669 28.169 29.169 0 0 0 0 0.40038 1 4434 4434 0.6015 0 1 23596 8857 14680 14689 27834 27834 0.14360667413507144 LLHYLHTT 8 Unmodified _LLHYLHTT_ 0 0 0 Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|18|1|sense Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|18|1|sense Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|18|1|sense MSMS UPN47_class_I_Rep_1 2 499.277099609375 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 67.537 1 70.898 70.398 71.398 3.3611 0 0 0 0.40738 1 16246 16246 0.79363 0 1 23597 33353 14681 14690 27835 27835 0.04085777651391709 LLHYSVIIV 9 Unmodified _LLHYSVIIV_ 0 0 0 MER44A_dup909|chr6:17649603-17649917:+|1.2203900739573337|0.0992872621385989|3.62|151.0|13|3|sense MER44A_dup909|chr6:17649603-17649917:+|1.2203900739573337|0.0992872621385989|3.62|151.0|13|3|sense MER44A_dup909|chr6:17649603-17649917:+|1.2203900739573337|0.0992872621385989|3.62|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 528.8263549804688 2 528.826235 1055.63792 NaN NaN NaN NaN NaN NaN NaN 97.585 1 101.07 100.57 101.57 3.4836 0 0 0 0.19137 1 23949 23949 16.942 0 1 23598 15978 14682 14691 27836 27836 0.11232380896467475 LLIALALHQD 10 Unmodified _LLIALALHQD_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS UPN48_class_I_Rep_3 7 553.8286743164062 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.615 1 83.257 82.757 83.757 3.6423 0 0 0 0.53105 1 18880 18880 0.45834 0 1 + 23599 18906 14683 14692 27837 27837 0.10094577919790026 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN46_class_I_Rep_3 1 486.29205322265625 2 486.292225 970.569897 0.26721 0.00012994 -0.1327 -6.4531E-05 0.13451 6.5411E-05 486.292076881766 80.332 0.46786 80.332 79.897 80.365 0 83 44 2 0 0 0 0.0055546 4 18883 18811;18847;18883;18918 129.77 54.843 1 1614400 23600 5682 14684 14693 27838;27839;27840;27841 27840 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN46_class_I_Rep_3 1 486.2919616699219 2 486.292225 970.569897 0.26809 0.00013037 -0.53888 -0.00026205 -0.27079 -0.00013168 486.2919785048927 80.516 0.15411 80.516 80.479 80.633 0 28 17 2 0 0 0 0.17979 1 18991 18991 22.658 5.5452 1 225960 23601 5682 14684 14693 27842 27842 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MSMS UPN46_class_I_Rep_3 1 486.292236328125 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 80.713 1 80.713 80.213 81.213 0 0 0 0 0.0066282 1 19025 19025 57.722 13.315 1 23602 5682 14684 14693 27843 27843 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN47_class_I_Rep_1 2 486.2923583984375 2 486.292225 970.569897 0.14457 7.0301E-05 0.13428 6.5298E-05 0.27884 0.0001356 486.29223063843017 75.144 1.0909 78.538 78.098 79.189 3.3937 274 100 3 0 0 0 0.0055546 8 18480 18443;18480;18521;18564;18595;18613;18650;18709 171.09 78.433 1 4148100 23603 5682 14684 14693 27844;27845;27846;27847;27848;27849;27850;27851 27845 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN47_class_I_Rep_1 2 486.2919921875 2 486.292225 970.569897 0.14919 7.2551E-05 -0.20108 -9.7785E-05 -0.051889 -2.5233E-05 486.29199466254585 75.853 0.6693 79.256 79.19 79.859 3.4034 81 61 3 0 0 0 0.081756 1 18748 18748 38.176 9.094 1 210520 23604 5682 14684 14693 27852 27852 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN47_class_I_Rep_2 3 486.29241943359375 2 486.292225 970.569897 0.25742 0.00012518 0.075517 3.6724E-05 0.33294 0.00016191 486.2922059731279 75.285 1.3156 78.597 78.19 79.506 3.3127 331 131 3 0 0 0 2.6985E-05 12 18574 18499;18536;18574;18612;18646;18682;18726;18759;18765;18801;18821;18840 157.8 62.535 1 3876300 23605 5682 14684 14693 27853;27854;27855;27856;27857;27858;27859;27860;27861;27862;27863;27864 27855 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MSMS UPN47_class_I_Rep_2 3 486.2917785644531 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 76.279 1 79.601 79.101 80.101 3.3216 0 0 0 0.050874 1 18876 18876 36.506 7.4246 1 23606 5682 14684 14693 27865 27865 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.29229736328125 2 486.292225 970.569897 0.16782 8.161E-05 -0.19935 -9.694E-05 -0.031525 -1.533E-05 486.2920454917522 76.044 0.45152 79.301 79.151 79.603 3.2573 64 43 2 0 0 0 0.0068778 2 18896 18896;18906 85.642 30.868 1 153330 23607 5682 14684 14693 27866;27867 27866 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.2923583984375 2 486.292225 970.569897 0.16974 8.2545E-05 -0.2424 -0.00011788 -0.072657 -3.5333E-05 486.29211455656184 76.68 0.090889 79.949 79.911 80.002 3.269 15 10 2 0 0 0 0.2924 1 19078 19078 14.405 2.1647 1 52111 23608 5682 14684 14693 27868 27868 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MSMS UPN47_class_I_Rep_3 4 486.291748046875 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 76.222 1 79.479 78.979 79.979 3.2573 0 0 0 0.04168 1 18942 18942 39.95 5.8473 1 23609 5682 14684 14693 27869 27869 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MSMS UPN47_class_I_Rep_3 4 486.29217529296875 2 486.292225 970.569897 NaN NaN NaN NaN NaN NaN NaN 76.355 1 79.612 79.112 80.112 3.2573 0 0 0 0.056669 1 18981 18981 34.932 12.196 1 23610 5682 14684 14693 27870 27870 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 486.292225 970.569897 0.1671 8.1261E-05 0.22781 0.00011078 0.39492 0.00019204 486.2922819069486 75.394 1.0472 78.64 78.187 79.234 3.2464 0.034039 8.0703E-05 NaN 157.8 259 98 3 NaN NaN NaN NaN 0 NaN NaN 0 4079300 23611 5682 14684 14693 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 486.292225 970.569897 0.28061 0.00013646 -0.52116 -0.00025344 -0.24055 -0.00011698 486.29185813905275 75.083 0.11385 78.649 78.59 78.704 3.5659 0.042982 -0.00064774 NaN 157.8 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 87573 23612 5682 14684 14693 0.08343511245811897 LLIFFFLRRSF 11 Unmodified _LLIFFFLRRSF_ 0 0 0 AluSq_dup14626|chr16:11900053-11900353:+|1.1830937138705364|0.1393381794389032|3.09|151.0|12|1|anti-sense AluSq_dup14626|chr16:11900053-11900353:+|1.1830937138705364|0.1393381794389032|3.09|151.0|12|1|anti-sense AluSq_dup14626|chr16:11900053-11900353:+|1.1830937138705364|0.1393381794389032|3.09|151.0|12|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 486.9589538574219 3 486.958852 1457.85473 0.1403 6.8321E-05 0.11857 5.774E-05 0.25887 0.00012606 486.9588465286156 94.381 0.33896 98.002 97.786 98.125 3.6208 56 39 2 0 0 0 0.68478 1 22709 22709 0.094841 0 1 205910 23613 240 14685 14694 27871 27871 0.14411356450000312 LLIGDRCFIK 10 Unmodified _LLIGDRCFIK_ 0 0 0 REV__AluJo_dup49173|chr12:6998030-6998315:-|1.2473933179550174|0.1791239422970401|2.8|151.0|17|2|anti-sense REV__AluJo_dup49173|chr12:6998030-6998315:-|1.2473933179550174|0.1791239422970401|2.8|151.0|17|2|anti-sense MSMS UPN48_class_I_Rep_2 6 589.3432006835938 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 82.501 1 86.17 85.67 86.67 3.669 0 0 0 0.53105 1 19598 19598 1.6526 0.17072 1 + 23614 17003 14686 14695 27872 27872 0.08763210939059718 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3635864257812 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 45.645 1 49.345 48.845 49.845 3.6999 0 0 0 0.40038 1 9607 9607 0.6015 0 1 + 23615 28482 14687 14696 27873 27873 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3637084960938 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 45.777 1 49.477 48.977 49.977 3.6999 0 0 0 0.40038 1 9648 9648 0.6015 0 1 + 23616 28482 14687 14696 27874 27874 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3636474609375 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 45.923 1 49.623 49.123 50.123 3.6999 0 0 0 0.40038 1 9692 9692 0.6015 0 1 + 23617 28482 14687 14696 27875 27875 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.363525390625 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.258 1 49.958 49.458 50.458 3.6999 0 0 0 0.40038 1 9795 9795 0.6015 0 1 + 23618 28482 14687 14696 27876 27876 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3634643554688 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.39 1 50.09 49.59 50.59 3.6999 0 0 0 0.39428 1 9834 9834 2.0598 0 1 + 23619 28482 14687 14696 27877 27877 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3641357421875 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.529 1 50.229 49.729 50.729 3.6999 0 0 0 0.40038 1 9877 9877 0.6015 0 1 + 23620 28482 14687 14696 27878 27878 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.36376953125 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.674 1 50.374 49.874 50.874 3.6999 0 0 0 0.40038 1 9922 9922 0.6015 0 1 + 23621 28482 14687 14696 27879 27879 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.364013671875 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.843 1 50.538 50.038 51.038 3.6951 0 0 0 0.40038 1 9974 9974 0.6015 0 1 + 23622 28482 14687 14696 27880 27880 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.36376953125 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.668 1 50.019 49.519 50.519 3.3515 0 0 0 0.40038 1 9949 9949 0.6015 0 1 + 23623 28482 14687 14696 27881 27881 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3638916015625 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.801 1 50.152 49.652 50.652 3.3515 0 0 0 0.40038 1 9990 9990 0.6015 0 1 + 23624 28482 14687 14696 27882 27882 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3640747070312 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.947 1 50.298 49.798 50.798 3.3515 0 0 0 0.40038 1 10035 10035 0.6015 0 1 + 23625 28482 14687 14696 27883 27883 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3643188476562 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 47.09 1 50.442 49.942 50.942 3.3515 0 0 0 0.40038 1 10079 10079 0.6015 0 1 + 23626 28482 14687 14696 27884 27884 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3639526367188 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 47.422 1 50.772 50.272 51.272 3.3492 0 0 0 0.40038 1 10178 10178 0.6015 0 1 + 23627 28482 14687 14696 27885 27885 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3656005859375 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 47.501 1 50.85 50.35 51.35 3.3492 0 0 0 0.40038 1 10202 10202 0.6015 0 1 + 23628 28482 14687 14696 27886 27886 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.2785034179688 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 48.035 1 51.385 50.885 51.885 3.3492 0 0 0 0.40038 1 10349 10349 0.6015 0 1 + 23629 28482 14687 14696 27887 27887 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3646240234375 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 48.252 1 51.601 51.101 52.101 3.3492 0 0 0 0.40038 1 10415 10415 0.6015 0 1 + 23630 28482 14687 14696 27888 27888 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.3639526367188 2 567.363319 1132.71209 0.3159 0.00017923 0.63723 0.00036154 0.95313 0.00054077 567.3636239442395 46.945 0.82061 50.189 49.629 50.449 3.2439 78 53 2 0 0 0 0.50015 1 10097 10097 0.6015 0 1 113550 + 23631 28482 14687 14696 27889 27889 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.36376953125 2 567.363319 1132.71209 0.33874 0.00019219 1.2519 0.00071028 1.5906 0.00090247 567.3639695052917 47.234 0.28485 50.478 50.358 50.642 3.2439 26 17 2 0 0 0 0.50015 1 10140 10140 0.6015 0 1 164100 + 23632 28482 14687 14696 27890 27890 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_3 7 567.3643188476562 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 47.889 1 51.523 51.023 52.023 3.6339 0 0 0 0.40038 1 9446 9446 0.6015 0 1 + 23633 28482 14687 14696 27891 27891 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_3 7 567.3638916015625 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 48.01 1 51.644 51.144 52.144 3.6339 0 0 0 0.40038 1 9484 9484 0.6015 0 1 + 23634 28482 14687 14696 27892 27892 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_3 7 567.3638916015625 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 48.166 1 51.8 51.3 52.3 3.6339 0 0 0 0.40038 1 9532 9532 0.6015 0 1 + 23635 28482 14687 14696 27893 27893 0.15103768778658377 LLIHFLLKH 9 Unmodified _LLIHFLLKH_ 0 0 0 REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense REV__L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_3 7 567.3642578125 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 48.298 1 51.932 51.432 52.432 3.6339 0 0 0 0.40038 1 9573 9573 0.6015 0 1 + 23636 28482 14687 14696 27894 27894 0.15103768778658377 LLIHHKIFL 9 Unmodified _LLIHHKIFL_ 0 0 0 L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|36|1|anti-sense L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|36|1|anti-sense L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 568.2904052734375 2 567.363319 1132.71209 0.3159 0.00017923 0.63723 0.00036154 0.95313 0.00054077 567.3636239442395 46.945 0.82061 50.189 49.629 50.449 3.2439 78 53 2 0 0 0 0.50015 1 10051 10051 0.6015 0 1 113550 23637 9124 14688 14697 27895 27895 0.1510376877863564 LLIHIRRMVL 10 Unmodified _LLIHIRRMVL_ 0 0 0 REV__L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|295|3|anti-sense REV__L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|295|3|anti-sense MSMS UPN46_class_I_Rep_3 1 421.52459716796875 3 421.940915 1262.80092 NaN NaN NaN NaN NaN NaN NaN 65.554 1 65.554 65.054 66.054 0 0 0 0 0.53105 1 14824 14824 0.15932 0 1 + 23638 30699 14689 14698 27896 27896 0.18002860746651095 LLIHVLDIPP 10 Unmodified _LLIHVLDIPP_ 0 0 0 REV__L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|83|2|anti-sense REV__L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|83|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 565.3533325195312 2 565.352617 1128.69068 0.45637 0.00025801 1.1515 0.000651 1.6079 0.00090901 565.3531437651623 109.14 0.44808 109.14 109 109.44 0 71 32 3 0 0 0 0.56033 1 26760 26760 3.5965 0 1 4575500 + 23639 26618 14690 14699 27897 27897 0.13148338959263128 LLIIMIGIS 9 Unmodified _LLIIMIGIS_ 0 0 0 REV__HERVK11-int_dup247|chr14:90951502-90953100:+|1.05465125592674|0.0196151267213221|5.75|151.0|20|2|sense REV__HERVK11-int_dup247|chr14:90951502-90953100:+|1.05465125592674|0.0196151267213221|5.75|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 486.8127136230469 2 486.811739 971.608925 NaN NaN NaN NaN NaN NaN NaN 75.057 1 78.37 77.87 78.87 3.3127 0 0 0 0.099968 1 18516 18516 24.674 0 1 + 23640 23797 14691 14700 27898 27898 0.12198520275831015 LLIKAKKR 8 Unmodified _LLIKAKKR_ 0 0 0 REV__nc|ENSG00000136522|Q9HD33-3|MRPL47 REV__nc|ENSG00000136522|Q9HD33-3|MRPL47 MSMS UPN46_class_I_Rep_3 1 485.3484802246094 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 58.819 1 58.819 58.319 59.319 0 0 0 0 0.40581 1 12968 12968 2.8892 0 1 + 23641 19187 14692 14701 27899 27899 0.2002749960716983 LLIKAKKR 8 Unmodified _LLIKAKKR_ 0 0 0 REV__nc|ENSG00000136522|Q9HD33-3|MRPL47 REV__nc|ENSG00000136522|Q9HD33-3|MRPL47 MSMS UPN46_class_I_Rep_3 1 485.348388671875 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 59.081 1 59.081 58.581 59.581 0 0 0 0 0.40581 1 13037 13037 2.8892 0 1 + 23642 19187 14692 14701 27900 27900 0.2002749960716983 LLIKEELL 8 Unmodified _LLIKEELL_ 0 0 0 REV__ENSG00000132855|ENST00000371129|ANGPTL3 REV__ENSG00000132855|ENST00000371129|ANGPTL3 MSMS UPN47_class_I_Rep_1 2 485.8116149902344 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 64.004 1 67.36 66.86 67.86 3.3557 0 0 0 0.40581 1 15181 15181 2.8892 0 1 + 23643 19038 14693 14702 27901 27901 0.12501272285282994 LLIKEELL 8 Unmodified _LLIKEELL_ 0 0 0 REV__ENSG00000132855|ENST00000371129|ANGPTL3 REV__ENSG00000132855|ENST00000371129|ANGPTL3 MSMS UPN47_class_I_Rep_1 2 485.811767578125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.315 1 70.676 70.176 71.176 3.3611 0 0 0 0.40604 1 16181 16181 2.5775 0 1 + 23644 19038 14693 14702 27902 27902 0.12501272285282994 LLIKEELL 8 Unmodified _LLIKEELL_ 0 0 0 REV__ENSG00000132855|ENST00000371129|ANGPTL3 REV__ENSG00000132855|ENST00000371129|ANGPTL3 MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.507 1 70.77 70.27 71.27 3.2636 0 0 0 0.4032 1 16286 16286 6.3541 0 1 + 23645 19038 14693 14702 27903 27903 0.12501272285282994 LLIKEELL 8 Unmodified _LLIKEELL_ 0 0 0 REV__ENSG00000132855|ENST00000371129|ANGPTL3 REV__ENSG00000132855|ENST00000371129|ANGPTL3 MSMS UPN47_class_I_Rep_2 3 485.81146240234375 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.81 1 71.074 70.574 71.574 3.2636 0 0 0 0.40581 1 16375 16375 2.8892 0 1 + 23646 19038 14693 14702 27904 27904 0.12501272285282994 LLIKKHWLWTR 11 Unmodified _LLIKKHWLWTR_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS UPN48_class_I_Rep_1 5 498.6420593261719 3 498.641634 1492.90307 0.25377 0.00012654 -0.1611 -8.0333E-05 0.092664 4.6206E-05 498.6415686265041 55.65 0.63067 59.158 58.969 59.599 3.5082 71 44 2 0 0 0 0.68478 1 11878 11878 0.094841 0 1 220970 23647 4147 14694 14703 27905 27905 0.17633850089919179 LLIKKHWLWTR 11 Unmodified _LLIKKHWLWTR_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS UPN48_class_I_Rep_3 7 498.97625732421875 3 498.641634 1492.90307 0.13036 6.5001E-05 0.29925 0.00014922 0.4296 0.00021422 498.6416893514814 55.191 0.36259 58.746 58.522 58.885 3.5554 30 19 2 0 0 0 0.68478 1 11667 11667 0.094841 0 1 198280 23648 4147 14694 14703 27906 27906 0.17633850089919179 LLIKKHWLWTR 11 Unmodified _LLIKKHWLWTR_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 498.641634 1492.90307 0.25377 0.00012654 -0.1611 -8.0333E-05 0.092664 4.6206E-05 498.6415686265041 55.65 0.63067 59.158 58.969 59.599 3.5082 0.055849 -0.00028264 NaN 0.094841 71 44 2 NaN NaN NaN NaN 0 NaN NaN 0 220970 23649 4147 14694 14703 0.17633850089919179 LLIKKHWLWTR 11 Unmodified _LLIKKHWLWTR_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 498.641634 1492.90307 0.13923 6.9426E-05 0.23236 0.00011587 0.37159 0.00018529 498.6416306116673 55.491 0.57357 59.047 58.782 59.356 3.5554 -0.055849 0.00030595 NaN 0.094841 75 35 3 NaN NaN NaN NaN 0 NaN NaN 0 197910 23650 4147 14694 14703 0.17633850089919179 LLIKKIILDLK 11 Unmodified _LLIKKIILDLK_ 0 0 0 REV__L1PA16_dup11108|chr13:31660961-31662600:-|1.0113047358368834|0.0027903079548043|8.5|148.0|33|2|sense REV__L1PA16_dup11108|chr13:31660961-31662600:-|1.0113047358368834|0.0027903079548043|8.5|148.0|33|2|sense MSMS UPN47_class_I_Rep_2 3 437.3107604980469 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 69.317 1 72.593 72.093 73.093 3.2761 0 0 0 0.38417 1 16826 16826 0.094841 0 1 + 23651 29322 14695 14704 27907 27907 0.2687456456685595 LLIKKIILDLK 11 Unmodified _LLIKKIILDLK_ 0 0 0 REV__L1PA16_dup11108|chr13:31660961-31662600:-|1.0113047358368834|0.0027903079548043|8.5|148.0|33|2|sense REV__L1PA16_dup11108|chr13:31660961-31662600:-|1.0113047358368834|0.0027903079548043|8.5|148.0|33|2|sense MSMS UPN47_class_I_Rep_3 4 437.3108215332031 3 437.310891 1308.91084 NaN NaN NaN NaN NaN NaN NaN 64.867 1 68.046 67.546 68.546 3.1795 0 0 0 0.38417 1 15542 15542 0.094841 0 1 + 23652 29322 14695 14704 27908 27908 0.2687456456685595 LLIKLSIFLLF 11 Unmodified _LLIKLSIFLLF_ 0 0 0 REV__Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|123|3|anti-sense REV__Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|123|3|anti-sense MSMS UPN46_class_I_Rep_3 1 440.62677001953125 3 440.62822 1318.86283 NaN NaN NaN NaN NaN NaN NaN 63.209 1 63.209 62.709 63.709 0 0 0 0 0.38417 1 14181 14181 0.45452 0 1 + 23653 32634 14696 14705 27909 27909 0.21615490646786384 LLIKTVPP 8 Unmodified _LLIKTVPP_ 0 0 0 REV__L1MA3_dup1730|chr3:123225553-123226898:-|3.4736860633407987|0.2903177678062041|3.58|151.0|81|3|anti-sense REV__L1MA3_dup1730|chr3:123225553-123226898:-|3.4736860633407987|0.2903177678062041|3.58|151.0|81|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.29742431640625 2 440.796946 879.57934 -0.44452 -0.00019594 3.5635 0.0015708 3.119 0.0013748 440.7994841531643 47.256 0.4657 50.5 50.358 50.823 3.2439 50 30 2 0 0 0 0.82752 1 10211 10211 0.69038 0 1 136960 + 23654 24982 14697 14706 27910 27910 0.1347332432200119 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 471.7953186035156 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.652 1 65.02 64.52 65.52 3.3681 0 0 0 0.38299 1 14470 14470 4.756 0 1 + 23655 32163 14698 14707 27911 27911 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 471.7958984375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.806 1 65.174 64.674 65.674 3.3681 0 0 0 0.38299 1 14516 14516 4.756 0 1 + 23656 32163 14698 14707 27912 27912 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.7951354980469 2 471.797143 941.579734 0.085655 4.0412E-05 -2.1776 -0.0010274 -2.0919 -0.00098697 471.7954811425031 61.998 0.30569 65.257 65.152 65.458 3.2594 25 18 2 0 0 0 0.45688 1 14605 14605 4.756 0 1 139420 + 23657 32163 14698 14707 27913 27913 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 471.795166015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.71 1 64.969 64.469 65.469 3.2594 0 0 0 0.39428 1 14526 14526 2.0598 0 1 + 23658 32163 14698 14707 27914 27914 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.848 1 65.108 64.608 65.608 3.2594 0 0 0 0.38299 1 14567 14567 4.756 0 1 + 23659 32163 14698 14707 27915 27915 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 471.79595947265625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.808 1 64.975 64.475 65.475 3.1667 0 0 0 0.38299 1 14608 14608 4.756 0 1 + 23660 32163 14698 14707 27916 27916 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.925 1 65.092 64.592 65.592 3.1667 0 0 0 0.38299 1 14645 14645 4.756 0 1 + 23661 32163 14698 14707 27917 27917 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.736 1 65.21 64.71 65.71 3.4738 0 0 0 0.38299 1 13739 13739 4.756 0 1 + 23662 32163 14698 14707 27918 27918 0.10660699251184269 LLILEGIAT 9 Unmodified _LLILEGIAT_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|18|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 471.797143 941.579734 -0.050813 -2.3973E-05 -2.674 -0.0012616 -2.7248 -0.0012855 471.7954748435391 62.243 0.18168 65.409 65.281 65.463 3.1667 0.076172 -0.00024081 NaN 4.756 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 294290 + 23663 32163 14698 14707 0.10660699251184269 LLILGKVVS 9 Unmodified _LLILGKVVS_ 0 0 0 REV__ENSG00000138823|ENST00000265517|MTTP REV__ENSG00000138823|ENST00000265517|MTTP MSMS UPN46_class_I_Rep_3 1 471.3220520019531 2 471.323328 940.632104 NaN NaN NaN NaN NaN NaN NaN 96.983 1 96.983 96.483 97.483 0 0 0 0 0.39428 1 23588 23588 2.0598 0.21551 1 + 23664 19299 14699 14708 27919 27919 0.15941282384801525 LLILILKN 8 Unmodified _LLILILKN_ 0 0 0 nc|ENSG00000292277|Q9UJ98-2|STAG3;ENST00000428423.5_1_7:72469630-72470067:-|nuORF;nc|ENSG00000277072|P0CL84-2|STAG3L2;ENST00000380775.3_7:74299886-74304447:-|nuORF;nc|ENSG00000277072|P0CL84|STAG3L2;nc|ENSG00000174353|P0CL85|STAG3L3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS UPN47_class_I_Rep_1 2 470.3322448730469 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.213 1 98.978 98.478 99.478 3.7648 0 0 0 0.40581 1 23637 23637 2.8892 0 1 23665 16858 14700 14709 27920 27920 0.18105872764454034 LLILILKN 8 Unmodified _LLILILKN_ 0 0 0 nc|ENSG00000292277|Q9UJ98-2|STAG3;ENST00000428423.5_1_7:72469630-72470067:-|nuORF;nc|ENSG00000277072|P0CL84-2|STAG3L2;ENST00000380775.3_7:74299886-74304447:-|nuORF;nc|ENSG00000277072|P0CL84|STAG3L2;nc|ENSG00000174353|P0CL85|STAG3L3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS UPN47_class_I_Rep_2 3 470.33209228515625 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.745 1 98.217 97.717 98.717 3.472 0 0 0 0.4032 1 23340 23340 6.3541 0 1 23666 16858 14700 14709 27921 27921 0.18105872764454034 LLILILKN 8 Unmodified _LLILILKN_ 0 0 0 nc|ENSG00000292277|Q9UJ98-2|STAG3;ENST00000428423.5_1_7:72469630-72470067:-|nuORF;nc|ENSG00000277072|P0CL84-2|STAG3L2;ENST00000380775.3_7:74299886-74304447:-|nuORF;nc|ENSG00000277072|P0CL84|STAG3L2;nc|ENSG00000174353|P0CL85|STAG3L3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS UPN48_class_I_Rep_2 6 470.33221435546875 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.322 1 98.099 97.599 98.599 3.7761 0 0 0 0.4032 1 22426 22426 6.3541 0 1 23667 16858 14700 14709 27922 27922 0.18105872764454034 LLILLITILRI 11 Unmodified _LLILLITILRI_ 0 0 0 L1MEi_dup469|chr2:39049217-39049684:-|1.5699744098656834|0.0587884460656167|4.74|151.0|22|1|anti-sense L1MEi_dup469|chr2:39049217-39049684:-|1.5699744098656834|0.0587884460656167|4.74|151.0|22|1|anti-sense L1MEi_dup469|chr2:39049217-39049684:-|1.5699744098656834|0.0587884460656167|4.74|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 647.4647827148438 2 647.465241 1292.91593 NaN NaN NaN NaN NaN NaN NaN 31.444 1 35.145 34.645 35.645 3.7015 0 0 0 0.38417 1 4656 4656 0 0 1 23668 13458 14701 14710 27923 27923 0.28118868429442045 LLILNFIP 8 Unmodified _LLILNFIP_ 0 0 0 L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|85|1|anti-sense L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|85|1|anti-sense L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|85|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.80303955078125 2 471.804771 941.59499 NaN NaN NaN NaN NaN NaN NaN 31.09 1 34.389 33.889 34.889 3.2991 0 0 0 0.40581 1 5252 5252 2.8892 0 1 23669 9273 14702 14711 27924 27924 0.12185610839048877 LLILQQAVQVI 11 Unmodified _LLILQQAVQVI_ 0 0 0 nc|ENSG00000071564|P15923-2|TCF3 nc|ENSG00000071564|P15923-2|TCF3 nc|ENSG00000071564|P15923-2|TCF3 MSMS UPN47_class_I_Rep_2 3 413.2662353515625 3 413.267463 1236.78056 NaN NaN NaN NaN NaN NaN NaN 98.486 1 101.98 101.48 102.48 3.4897 0 0 0 0.38417 1 24150 24150 1.3296 0 1 23670 16635 14703 14712 27925 27925 0.1716396856782012 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 507.29534912109375 2 506.853119 1011.69168 0.316 0.00016017 -0.10906 -5.5275E-05 0.20694 0.00010489 506.85287708896817 109.73 0.2527 109.73 109.63 109.88 0 48 21 3 0 0 0 0.72333 1 27027 27027 0.79363 0 1 1371500 23671 13294 14704 14713 27926 27926 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 506.8526916503906 2 506.853119 1011.69168 0.3371 0.00017086 -0.44655 -0.00022634 -0.10945 -5.5475E-05 506.85285881322545 107.97 0.054382 111.61 111.57 111.63 3.6355 6 2 3 0 0 0 0.82752 1 26493 26493 2.8892 0 1 2246100 23672 13294 14704 14713 27927 27927 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 506.8531188964844 2 506.853119 1011.69168 0.33749 0.00017106 -0.093251 -4.7264E-05 0.24424 0.00012379 506.85294205200853 108.32 0.79624 111.96 111.68 112.48 3.6355 201 79 4 0 0 0 0.82752 3 26572 26572;26664;26709 0.79363 0 1 20784000 23673 13294 14704 14713 27928;27929;27930 27928 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 506.8531494140625 2 506.853119 1011.69168 0.35388 0.00017936 -0.14355 -7.2758E-05 0.21033 0.00010661 506.85292127319815 108.29 0.55359 111.82 111.36 111.91 3.5333 138 59 4 0 0 0 0.82752 2 26128 26128;26205 2.8892 0 1 28483000 23674 13294 14704 14713 27931;27932 27931 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 506.8531188964844 2 506.853119 1011.69168 0.35519 0.00018003 -0.25705 -0.00013028 0.09814 4.9742E-05 506.85293416258435 108.5 0.74386 112.03 111.91 112.65 3.5333 125 84 2 0 0 0 0.82752 2 26289 26289;26370 0.79363 0 1 17334000 23675 13294 14704 14713 27933;27934 27933 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.85296630859375 2 506.853119 1011.69168 0.21437 0.00010865 -0.034274 -1.7372E-05 0.1801 9.1282E-05 506.85299376764226 108.14 0.26706 111.77 111.52 111.79 3.6313 66 24 4 0 0 0 0.82752 1 26106 26106 2.8892 0 1 11968000 23676 13294 14704 14713 27935 27935 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.8529052734375 2 506.853119 1011.69168 0.21408 0.00010851 -0.27339 -0.00013857 -0.059309 -3.0061E-05 506.85300463546946 109.53 0.49411 113.16 112.97 113.47 3.6321 91 63 2 0 0 0 0.82752 1 26641 26641 0.79363 0 1 723650 23677 13294 14704 14713 27936 27936 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.8522644042969 2 506.853119 1011.69168 0.21386 0.0001084 -1.0752 -0.00054494 -0.86129 -0.00043655 506.85277123239706 109.95 0.16006 113.58 113.47 113.63 3.6326 30 22 2 0 0 0 0.82752 1 26703 26703 0.79363 0 1 236870 23678 13294 14704 14713 27937 27937 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.8528137207031 2 506.853119 1011.69168 0.30928 0.00015676 -0.39486 -0.00020014 -0.085587 -4.338E-05 506.85304428623726 107.86 0.17646 111.54 111.41 111.59 3.6783 27 17 2 0 0 0 0.82752 1 25538 25538 0.79363 0 1 3642700 23679 13294 14704 14713 27938 27938 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.85284423828125 2 506.853119 1011.69168 0.30946 0.00015685 -0.40914 -0.00020738 -0.09968 -5.0523E-05 506.8527953245399 108.02 0.11688 111.69 111.59 111.71 3.6746 33 10 4 0 0 0 0.82752 1 25575 25575 2.8892 0 1 12724000 23680 13294 14704 14713 27939 27939 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.85321044921875 2 506.853119 1011.69168 0.30957 0.00015691 -0.13204 -6.6927E-05 0.17753 8.998E-05 506.8529028209351 108.77 0.58443 112.44 112.2 112.78 3.6746 120 59 3 0 0 0 0.82752 1 25857 25857 0.79363 0 1 10612000 23681 13294 14704 14713 27940 27940 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.85308837890625 2 506.853119 1011.69168 0.30928 0.00015676 -0.34662 -0.00017568 -0.037333 -1.8922E-05 506.85289003853484 109.43 0.56618 113.1 112.97 113.54 3.6715 145 78 2 0 0 0 0.82752 3 26066 26066;26106;26136 0.79363 0 1 1119400 23682 13294 14704 14713 27941;27942;27943 27941 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8533630371094 2 506.853119 1011.69168 0.27237 0.00013805 -0.13263 -6.7224E-05 0.13974 7.0828E-05 506.8529840455236 107.96 0.37105 111.64 111.29 111.66 3.6813 69 41 3 0 0 0 0.82752 1 25478 25478 0.79363 0 1 6688900 23683 13294 14704 14713 27944 27944 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8530578613281 2 506.853119 1011.69168 0.27242 0.00013807 -0.54351 -0.00027548 -0.2711 -0.00013741 507.3541923186086 109.86 0.14646 113.53 113.49 113.64 3.67 27 19 2 0 0 0 0.82752 1 26103 26103 0.79363 0 1 408800 23684 13294 14704 14713 27945 27945 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MSMS UPN48_class_I_Rep_3 7 506.8534240722656 2 506.853119 1011.69168 NaN NaN NaN NaN NaN NaN NaN 109.76 1 113.43 112.93 113.93 3.67 0 0 0 0.40738 1 26071 26071 0.79363 0 1 23685 13294 14704 14713 27946 27946 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.853119 1011.69168 0.33688 0.00017075 -0.30716 -0.00015568 0.029724 1.5066E-05 506.8529585035461 109.58 0.32836 113.19 113.02 113.35 3.6046 -0.20853 0.00028526 NaN 0.79363 50 40 2 NaN NaN NaN NaN 0 NaN NaN 0 494630 23686 13294 14704 14713 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.853119 1011.69168 0.33734 0.00017098 -0.25501 -0.00012925 0.08233 4.1729E-05 506.8529323554032 108.03 0.040176 111.66 111.63 111.67 3.6355 0.046979 -7.5963E-05 NaN 0.79363 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 2424200 23687 13294 14704 14713 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 506.853119 1011.69168 0.35435 0.0001796 -0.72849 -0.00036924 -0.37414 -0.00018963 506.8529124781673 109.78 0.10417 113.31 113.27 113.37 3.5307 -0.087637 -0.00014184 NaN 0.79363 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 217910 23688 13294 14704 14713 0.18630598118829766 LLILRTRK 8 Unmodified _LLILRTRK_ 0 0 0 L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense;L1MEf_dup5159|chr7:75458554-75459317:+|1.1096033714822895|0.1239549104811036|3.16|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 506.853119 1011.69168 0.31499 0.00015965 -1.1979 -0.00060716 -0.88291 -0.00044751 506.8528774403805 109.83 0.15988 113.37 113.32 113.48 3.5347 -0.028536 -0.00061769 NaN 0.79363 28 23 2 NaN NaN NaN NaN 0 NaN NaN 0 141200 23689 13294 14704 14713 0.18630598118829766 LLIMTVRP 8 Unmodified _LLIMTVRP_ 0 0 0 L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.794921875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 34.624 1 38.31 37.81 38.81 3.6859 0 0 0 0.40738 1 6254 6254 0.79363 0 1 23690 13137 14705 14714 27947 27947 0.10008482818830089 LLIMTVRP 8 Unmodified _LLIMTVRP_ 0 0 0 L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79449462890625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 119.22 1 122.83 122.33 123.33 3.6036 0 0 0 0.40738 1 29617 29617 0.79363 0 1 23691 13137 14705 14714 27948 27948 0.10008482818830089 LLIMTVRP 8 Unmodified _LLIMTVRP_ 0 0 0 L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79522705078125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 25.132 1 28.615 28.115 29.115 3.483 0 0 0 0.40738 1 3444 3444 0.79363 0 1 23692 13137 14705 14714 27949 27949 0.10008482818830089 LLIQGTYAF 9 Unmodified _LLIQGTYAF_ 0 0 0 REV__ENSG00000186231|ENST00000369261|KLHL32 REV__ENSG00000186231|ENST00000369261|KLHL32 MULTI-MSMS UPN48_class_I_Rep_1 5 513.2865600585938 2 513.286943 1024.55933 0.23751 0.00012191 -0.010549 -5.4146E-06 0.22696 0.0001165 513.2869257034386 49.654 0.52487 53.179 52.96 53.485 3.5246 41 32 2 0 0 0 0.32219 1 10104 10104 12.532 0 1 83711 + 23693 20885 14706 14715 27950 27950 0.04803528591378381 LLIQGVNF 8 Unmodified _LLIQGVNF_ 0 0 0 REV__nc|ENSG00000101464|Q9H490-2|PIGU REV__nc|ENSG00000101464|Q9H490-2|PIGU MULTI-MSMS UPN47_class_I_Rep_2 3 452.2690124511719 2 452.268553 902.522553 0.054537 2.4665E-05 1.0804 0.00048864 1.135 0.00051331 452.2689626265658 115.83 0.10342 119.32 119.28 119.39 3.4965 9 6 2 0 0 0 0.82752 1 28261 28261 0.69038 0 1 1101200 + 23694 18164 14707 14716 27951 27951 0.06739276765483737 LLIQGVNF 8 Unmodified _LLIQGVNF_ 0 0 0 REV__nc|ENSG00000101464|Q9H490-2|PIGU REV__nc|ENSG00000101464|Q9H490-2|PIGU MULTI-MATCH UPN46_class_I_Rep_3 1 2 452.268553 902.522553 0.19118 8.6465E-05 0.48889 0.00022111 0.68007 0.00030757 452.26865288061396 119.3 0.030029 119.3 119.27 119.3 0 -0.013598 -0.0002217 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 38208 + 23695 18164 14707 14716 0.06739276765483737 LLIQSRKN 8 Unmodified _LLIQSRKN_ 0 0 0 nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3 nc|ENSG00000158161|Q99504-2|EYA3 nc|ENSG00000158161|Q99504-2|EYA3 MULTI-MSMS UPN48_class_I_Rep_3 7 486.3039245605469 2 486.303458 970.592364 0.27009 0.00013135 0.052156 2.5364E-05 0.32225 0.00015671 486.30338938101244 79.642 0.101 83.284 83.242 83.343 3.6423 16 12 2 0 0 0 0.82752 1 18899 18899 2.0598 0 1 65349 23696 3789 14708 14717 27952 27952 0.10589155434092845 LLIQSRKN 8 Unmodified _LLIQSRKN_ 0 0 0 nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3 nc|ENSG00000158161|Q99504-2|EYA3 nc|ENSG00000158161|Q99504-2|EYA3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 486.303458 970.592364 0.16554 8.0504E-05 -1.5198 -0.00073907 -1.3542 -0.00065857 486.30225316161204 79.593 0.037903 83.142 83.108 83.146 3.5487 -0.071102 -0.0012611 NaN 2.0598 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 31632 23697 3789 14708 14717 0.10589155434092845 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.33404541015625 2 507.333893 1012.65323 0.22475 0.00011402 -0.15724 -7.9773E-05 0.067508 3.4249E-05 507.333757136833 75.04 0.76552 78.434 78.109 78.874 3.3937 143 69 3 0 0 0 0.21236 4 18473 18473;18515;18554;18591 49.933 0 1 830470 + 23698 25324 14709 14718 27953;27954;27955;27956 27953 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MSMS UPN47_class_I_Rep_1 2 507.3338317871094 2 507.333893 1012.65323 NaN NaN NaN NaN NaN NaN NaN 75.625 1 79.029 78.529 79.529 3.4034 0 0 0 0.53105 1 18677 18677 58.679 0 1 + 23699 25324 14709 14718 27957 27957 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.333984375 2 507.333893 1012.65323 0.17416 8.8358E-05 -0.007546 -3.8283E-06 0.16662 8.453E-05 507.33383391498546 75.696 1.2992 79.018 78.241 79.54 3.3216 228 129 3 0 0 0 0.21236 6 18586 18546;18586;18625;18667;18715;18814 56.177 0 1 738300 + 23700 25324 14709 14718 27958;27959;27960;27961;27962;27963 27959 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.3336181640625 2 507.333893 1012.65323 0.18203 9.235E-05 -0.56602 -0.00028716 -0.38399 -0.00019481 507.3336456909225 76.27 0.15579 79.592 79.49 79.646 3.3216 19 15 2 0 0 0 0.35076 1 18871 18871 24.021 0 1 97249 + 23701 25324 14709 14718 27964 27964 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.3341064453125 2 507.333893 1012.65323 0.27027 0.00013712 -0.1728 -8.7668E-05 0.09747 4.945E-05 507.3337660771796 75.603 0.80363 78.86 78.288 79.091 3.2573 136 73 2 0 0 0 0.21664 4 18674 18674;18716;18753;18804 41.84 0 1 283510 + 23702 25324 14709 14718 27965;27966;27967;27968 27965 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.3337707519531 2 507.333893 1012.65323 0.27273 0.00013837 -0.36908 -0.00018725 -0.096346 -4.8879E-05 507.3337268441698 76.344 0.44632 79.601 79.513 79.959 3.2573 63 46 2 0 0 0 0.36464 2 19017 18978;19017 22.736 0 1 79962 + 23703 25324 14709 14718 27969;27970 27970 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 507.333893 1012.65323 0.22475 0.00011402 -0.15724 -7.9773E-05 0.067508 3.4249E-05 507.333757136833 75.04 0.76552 78.434 78.109 78.874 3.3937 0 0 NaN 49.933 143 69 3 NaN NaN NaN NaN 0 NaN NaN 0 830470 + 23704 25324 14709 14718 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 507.333893 1012.65323 0.18203 9.235E-05 -0.56602 -0.00028716 -0.38399 -0.00019481 507.3336456909225 76.27 0.15579 79.592 79.49 79.646 3.3216 0.079714 -0.00014192 NaN 24.021 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 97249 + 23705 25324 14709 14718 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 507.333893 1012.65323 0.17416 8.8358E-05 -0.007546 -3.8283E-06 0.16662 8.453E-05 507.33383391498546 75.696 1.2992 79.018 78.241 79.54 3.3216 0.078663 5.8636E-05 NaN 41.84 228 129 3 NaN NaN NaN NaN 0 NaN NaN 0 738300 + 23706 25324 14709 14718 0.14741247693666537 LLIVISGLSV 10 Unmodified _LLIVISGLSV_ 0 0 0 REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense REV__L1MA4A_dup5412|chr15:76459386-76460817:-|2.3390809750848893|0.0389374043440445|5.91|151.0|76|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 507.333893 1012.65323 0.27027 0.00013712 -0.1728 -8.7668E-05 0.09747 4.945E-05 507.3337660771796 75.603 0.80363 78.86 78.288 79.091 3.2573 -0.078663 -0.00010904 NaN 41.84 136 73 2 NaN NaN NaN NaN 0 NaN NaN 0 283510 + 23707 25324 14709 14718 0.14741247693666537 LLIWLRKVYY 10 Unmodified _LLIWLRKVYY_ 0 0 0 REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|372|3|anti-sense REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|372|3|anti-sense MSMS UPN47_class_I_Rep_1 2 456.2801818847656 3 456.279703 1365.81728 NaN NaN NaN NaN NaN NaN NaN 111.55 1 115.12 114.62 115.62 3.572 0 0 0 0.53105 1 27520 27520 0.15932 0 1 + 23708 27291 14710 14719 27971 27971 0.14900265184428463 LLIWMRKF 8 Unmodified _LLIWMRKF_ 0 0 0 REV__L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense REV__L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|65|3|anti-sense MSMS UPN48_class_I_Rep_1 5 553.8294677734375 2 553.830798 1105.64704 NaN NaN NaN NaN NaN NaN NaN 83.051 1 86.638 86.138 87.138 3.5871 0 0 0 0.40738 1 19852 19852 0.79363 0 1 + 23709 27242 14711 14720 27972 27972 0.09844450981154296 LLKDAVWL 8 Unmodified _LLKDAVWL_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|279|2|anti-sense;L1PREC2_dup7039|chr18:9173370-9174805:-|1.5333971916925715|0.0360346649712082|5.41|151.0|59|2|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|279|2|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|279|2|anti-sense MSMS UPN47_class_I_Rep_1 2 479.2920227050781 2 479.292028 956.569503 NaN NaN NaN NaN NaN NaN NaN 91.823 1 95.529 95.029 96.029 3.7053 0 0 0 0.39996 1 22898 22898 7.9102 0 1 23710 13697 14712 14721 27973 27973 0.0894813631659872 LLKEELIL 8 Unmodified _LLKEELIL_ 0 0 0 REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.811767578125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.438 1 70.799 70.299 71.299 3.3611 0 0 0 0.4032 1 16218 16218 6.3541 0 1 + 23711 24318 14713 14722 27974 27974 0.12501272285282994 LLKEELIL 8 Unmodified _LLKEELIL_ 0 0 0 REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8115539550781 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.37 1 70.634 70.134 71.134 3.2636 0 0 0 0.40581 1 16244 16244 2.8892 0 1 + 23712 24318 14713 14722 27975 27975 0.12501272285282994 LLKEELIL 8 Unmodified _LLKEELIL_ 0 0 0 REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.812793 969.611034 0.13433 6.5257E-05 0.54362 0.0002641 0.67795 0.00032936 485.8117207131178 64.339 0.59026 67.513 67.227 67.817 3.1741 72 41 2 0 0 0 0.82752 1 15371 15371 6.3541 0 1 423860 + 23713 24318 14713 14722 27976 27976 0.12501272285282994 LLKEELIL 8 Unmodified _LLKEELIL_ 0 0 0 REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense REV__L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_3 4 485.811767578125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.616 1 70.808 70.308 71.308 3.1914 0 0 0 0.40581 1 16382 16382 2.8892 0 1 + 23714 24318 14713 14722 27977 27977 0.12501272285282994 LLKEIKRTQT 10 Unmodified _LLKEIKRTQT_ 0 0 0 L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|43|1|sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|43|1|sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|43|1|sense MSMS UPN46_class_I_Rep_3 1 615.3949584960938 2 615.382437 1228.75032 NaN NaN NaN NaN NaN NaN NaN 99.833 1 99.833 99.333 100.33 0 0 0 0 0.53105 1 24331 24331 1.4819 0 1 23715 14715 14714 14723 27978 27978 0.14509609902643206 LLKEIKRTQT 10 Unmodified _LLKEIKRTQT_ 0 0 0 L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|43|1|sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|43|1|sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|43|1|sense MSMS UPN48_class_I_Rep_1 5 615.3948974609375 2 615.382437 1228.75032 NaN NaN NaN NaN NaN NaN NaN 93.889 1 97.51 97.01 98.01 3.6208 0 0 0 0.53105 1 22581 22581 1.4819 0 1 23716 14715 14714 14723 27979 27979 0.14509609902643206 LLKENLEFY 9 Unmodified _LLKENLEFY_ 0 0 0 ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 584.8165893554688 2 584.816064 1167.61758 0.34725 0.00020308 -0.049952 -2.9213E-05 0.2973 0.00017387 584.8159826074906 68.991 0.52534 72.359 72.026 72.552 3.3678 50 38 2 0 0 0 0.19147 1 16680 16680 21.537 0 1 125130 23717 5936 14715 14724 27980 27980 0.04047165445990686 LLKENLEFY 9 Unmodified _LLKENLEFY_ 0 0 0 ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 584.81591796875 2 584.816064 1167.61758 0.40059 0.00023427 -0.18754 -0.00010968 0.21305 0.00012459 584.8159297434156 69.274 0.7614 72.55 72.205 72.966 3.2761 80 61 2 0 0 0 0.19147 1 16800 16800 21.537 0 1 110440 23718 5936 14715 14724 27981 27981 0.04047165445990686 LLKENLEFY 9 Unmodified _LLKENLEFY_ 0 0 0 ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 584.8169555664062 2 584.816064 1167.61758 0.44613 0.0002609 -0.27619 -0.00016152 0.16994 9.9384E-05 584.8159292219758 69.381 0.81195 72.586 72.206 73.018 3.2044 83 63 2 0 0 0 0.19147 4 16830 16830;16891;16908;16947 21.537 0 1 147850 23719 5936 14715 14724 27982;27983;27984;27985 27982 0.04047165445990686 LLKENYKL 8 Unmodified _LLKENYKL_ 0 0 0 L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense;L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|171|3|sense L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|42|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.80780029296875 2 510.808042 1019.60153 0.40571 0.00020724 -0.25295 -0.00012921 0.15276 7.8033E-05 510.80780508807743 58.916 0.74771 62.415 62.105 62.853 3.4987 75 45 2 0 0 0 0.82752 1 12821 12821 6.2058 0 1 224960 23720 14903 14716 14725 27986 27986 0.09251503999746546 LLKGSYRSG 9 Unmodified _LLKGSYRSG_ 0 0 0 MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|29|1|anti-sense MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|29|1|anti-sense MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|29|1|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7799072265625 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 33.782 1 37.302 36.802 37.802 3.5201 0 0 0 0.3967 1 5317 5317 1.4819 0 1 23721 16374 14717 14726 27987 27987 0.054488761630864246 LLKHHGRS 8 Unmodified _LLKHHGRS_ 0 0 0 nc|ENSG00000143479|O43781-2|DYRK3;ENSG00000143479|ENST00000367109|DYRK3 nc|ENSG00000143479|O43781-2|DYRK3 nc|ENSG00000143479|O43781-2|DYRK3 MSMS UPN46_class_I_Rep_3 1 474.2824401855469 2 474.280318 946.546083 NaN NaN NaN NaN NaN NaN NaN 18.359 1 18.359 17.859 18.859 0 0 0 0 0.40753 1 1593 1593 0.6015 0 1 23722 3303 14718 14727 27988 27988 0.07067135322654394 LLKHLSVSS 9 Unmodified _LLKHLSVSS_ 0 0 0 REV__ENST00000264883.7_1_4:77057508-77057559:-|nuORF REV__ENST00000264883.7_1_4:77057508-77057559:-|nuORF MSMS UPN48_class_I_Rep_1 5 492.2974853515625 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 60.829 1 64.303 63.803 64.803 3.4737 0 0 0 0.35339 1 13488 13488 7.9102 2.1497 1 + 23723 21585 14719 14728 27989 27989 0.08914333339942004 LLKHPNRNK 9 Unmodified _LLKHPNRNK_ 0 0 0 REV__L1MB7_dup6503|chr5:71532767-71533448:-|1.00307612920423|0.0207647972819255|5.59|151.0|1|1|sense REV__L1MB7_dup6503|chr5:71532767-71533448:-|1.00307612920423|0.0207647972819255|5.59|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 560.34228515625 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 78.773 1 82.395 81.895 82.895 3.6216 0 0 0 0.39518 1 18658 18658 1.8442 0 1 + 23724 26292 14720 14729 27990 27990 0.11267337965296065 LLKIEYFIT 9 Unmodified _LLKIEYFIT_ 0 0 0 REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|64|3|anti-sense REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|64|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.841064453125 2 570.339175 1138.6638 0.51522 0.00029385 0.11856 6.7619E-05 0.63378 0.00036147 570.3392924120184 72.745 0.075966 76.282 76.232 76.308 3.5373 6 4 2 0 0 0 0.49026 1 16980 16980 1.6526 0 1 62811 + 23725 17303 14721 14730 27991 27991 0.10001230348098034 LLKIEYFIT 9 Unmodified _LLKIEYFIT_ 0 0 0 REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|64|3|anti-sense REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|64|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 570.339175 1138.6638 0.44004 0.00025097 0.50557 0.00028835 0.94561 0.00053932 570.3393329285537 72.614 0.054062 76.087 76.065 76.119 3.4732 -0.097464 0.00038363 NaN 1.6526 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 69384 + 23726 17303 14721 14730 0.10001230348098034 LLKIEYFIT 9 Unmodified _LLKIEYFIT_ 0 0 0 REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|64|3|anti-sense REV__Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|64|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 570.339175 1138.6638 0.51522 0.00029385 0.11856 6.7619E-05 0.63378 0.00036147 570.3392924120184 72.745 0.075966 76.282 76.232 76.308 3.5373 0.097464 -5.7826E-05 NaN 1.6526 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 62811 + 23727 17303 14721 14730 0.10001230348098034 LLKIFIYI 8 Unmodified _LLKIFIYI_ 0 0 0 REV__HAL1b_dup5248|chr21:33232999-33233641:+|4.202892728650779|0.2542239074765444|4.05|151.0|44|3|anti-sense REV__HAL1b_dup5248|chr21:33232999-33233641:+|4.202892728650779|0.2542239074765444|4.05|151.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 511.83380126953125 2 511.836071 1021.65759 NaN NaN NaN NaN NaN NaN NaN 75.35 1 75.35 74.85 75.85 0 0 0 0 0.40604 1 17515 17515 2.5775 0 1 + 23728 23460 14722 14731 27992 27992 0.14762756907202856 LLKIIVHSITT 11 Unmodified _LLKIIVHSITT_ 0 0 0 REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|15|1|sense REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 413.1932373046875 3 413.267463 1236.78056 NaN NaN NaN NaN NaN NaN NaN 80.073 1 83.621 83.121 84.121 3.5487 0 0 0 0.38417 1 19117 19117 0.50596 0.34663 1 + 23729 26679 14723 14732 27993 27993 0.1716396856782012 LLKILTPLRG 10 Unmodified _LLKILTPLRG_ 0 0 0 REV__L1ME1_dup19087|chr10:14594963-14595243:+|1.4001038503695946|0.0052572376399347|8.06|151.0|3|1|sense REV__L1ME1_dup19087|chr10:14594963-14595243:+|1.4001038503695946|0.0052572376399347|8.06|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 561.9358520507812 2 562.381709 1122.74886 NaN NaN NaN NaN NaN NaN NaN 82.131 1 82.131 81.631 82.631 0 0 0 0 0.53105 1 19438 19438 0.35063 0 1 + 23730 27648 14724 14733 27994 27994 0.19240020604524943 LLKIVLAIHD 10 Unmodified _LLKIVLAIHD_ 0 0 0 L1MA9_dup5830|chr6:41985929-41986840:-|3.9473034982977255|0.0432127243531074|6.51|150.0|50|3|anti-sense L1MA9_dup5830|chr6:41985929-41986840:-|3.9473034982977255|0.0432127243531074|6.51|150.0|50|3|anti-sense L1MA9_dup5830|chr6:41985929-41986840:-|3.9473034982977255|0.0432127243531074|6.51|150.0|50|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.8646240234375 2 567.865892 1133.71723 NaN NaN NaN NaN NaN NaN NaN 47.289 1 50.64 50.14 51.14 3.3515 0 0 0 0.53105 1 10139 10139 1.4819 0 1 23731 10144 14725 14734 27995 27995 0.1557202785058962 LLKKAQYW 8 Unmodified _LLKKAQYW_ 0 0 0 REV__L1MA4_dup5419|chr9:85676105-85677330:+|1.1291404502494764|0.010930497656513|6.69|151.0|36|3|sense REV__L1MA4_dup5419|chr9:85676105-85677330:+|1.1291404502494764|0.010930497656513|6.69|151.0|36|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.3104248046875 2 525.310752 1048.60695 0.48757 0.00025613 -0.26213 -0.0001377 0.22545 0.00011843 525.3105839087842 75.477 0.18086 79.043 78.978 79.159 3.5659 22 17 2 0 0 0 0.82752 1 17737 17737 9.3474 0.75416 1 133690 + 23732 25182 14726 14735 27996 27996 0.08459227582216045 LLKKGKKLR 9 Unmodified _LLKKGKKLR_ 0 0 0 ENSG00000116254|ENST00000262450|CHD5 ENSG00000116254|ENST00000262450|CHD5 ENSG00000116254|ENST00000262450|CHD5 MSMS UPN47_class_I_Rep_3 4 542.3892211914062 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 70.034 1 73.238 72.738 73.738 3.2044 0 0 0 0.40038 1 17111 17111 0.6015 0 1 23733 2174 14727 14736 27997 27997 0.22711146561300666 LLKKKFKKI 9 Unmodified _LLKKKFKKI_ 0 0 0 REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|5|1|sense REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 573.2216796875 2 573.410269 1144.80599 NaN NaN NaN NaN NaN NaN NaN 52.744 1 52.744 52.244 53.244 0 0 0 0 0.4029 1 11296 11296 0 0 1 + 23734 23529 14728 14737 27998 27998 0.23937487880948538 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 469.32861328125 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 93.912 1 97.533 97.033 98.033 3.6208 0 0 0 0.38417 1 22587 22587 0.094841 0 1 23735 185 14729 14738 27999 27999 0.27218263557665523 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 469.3283996582031 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 94.889 1 98.506 98.006 99.006 3.6167 0 0 0 0.38417 1 22841 22841 0.094841 0 1 23736 185 14729 14738 28000 28000 0.27218263557665523 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 469.32806396484375 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 35.359 1 39.032 38.532 39.532 3.6735 0 0 0 0.38417 1 5816 5816 0.08335 0.08335 1 23737 185 14729 14738 28001 28001 0.27218263557665523 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 469.3385925292969 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 84.2 1 87.893 87.393 88.393 3.6937 0 0 0 0.38417 1 20039 20039 0.094841 0 1 23738 185 14729 14738 28002 28002 0.27218263557665523 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 469.338134765625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 84.444 1 88.138 87.638 88.638 3.6937 0 0 0 0.38417 1 20096 20096 0.094841 0 1 23739 185 14729 14738 28003 28003 0.27218263557665523 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 469.3287353515625 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 29.374 1 33.102 32.602 33.602 3.7286 0 0 0 0.38417 1 4111 4111 0.094841 0 1 23740 185 14729 14738 28004 28004 0.27218263557665523 LLKKKKILFKF 11 Unmodified _LLKKKKILFKF_ 0 0 0 AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 469.3282775878906 3 469.326764 1404.95846 NaN NaN NaN NaN NaN NaN NaN 97.434 1 101.34 100.84 101.84 3.9084 0 0 0 0.38417 1 23094 23094 0.094841 0.094841 1 23741 185 14729 14738 28005 28005 0.27218263557665523 LLKKNEIYVQ 10 Unmodified _LLKKNEIYVQ_ 0 0 0 L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|308|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|308|3|anti-sense L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|308|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.3705444335938 2 624.371538 1246.72852 0.60343 0.00037676 0.24612 0.00015367 0.84955 0.00053043 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.56374 1 21846 21846 1.1933 0 1 1749400 23742 14963 14730 14739 28006 28006 0.11502805154077578 LLKKPKKRP 9 Unmodified _LLKKPKKRP_ 0 0 0 ENSG00000150455|ENST00000392679|TIRAP;nc|ENSG00000150455|P58753-2|TIRAP;nc|ENSG00000150455|P58753-3|TIRAP ENSG00000150455|ENST00000392679|TIRAP ENSG00000150455|ENST00000392679|TIRAP MULTI-SECPEP UPN46_class_I_Rep_3 1 553.8302001953125 2 554.389868 1106.76518 0.40722 0.00022576 1.4535 0.00080582 1.8607 0.0010316 554.3892400274738 82.921 0.060562 82.921 82.89 82.951 0 5 3 2 0 0 0 0.12532 1 19668 19668 0.52476 0 1 29798 23743 3562 14731 14740 28007 28007 0.2160714656131404 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 594.9058837890625 2 594.905548 1187.79654 0.63479 0.00037764 0.55991 0.00033309 1.1947 0.00071073 594.9056342708386 108.43 0.13457 111.96 111.91 112.05 3.5333 31 12 3 0 0 0 0.56493 1 26313 26313 0.35063 0 1 3224100 + 23744 30144 14732 14741 28008 28008 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 594.9058837890625 2 594.905548 1187.79654 0.50828 0.00030238 0.74098 0.00044081 1.2493 0.00074319 594.9059309136821 108.5 0.098412 112.04 111.95 112.05 3.5382 19 8 3 0 0 0 0.56493 1 26551 26551 0.35063 0 1 3032100 + 23745 30144 14732 14741 28009 28009 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 594.90576171875 2 594.905548 1187.79654 0.48451 0.00028824 0.3352 0.00019941 0.81971 0.00048765 594.9056442185835 108.26 0.46744 111.93 111.72 112.19 3.6746 148 54 3 0 0 0 0.56493 1 25716 25716 0.35063 0 1 12548000 + 23746 30144 14732 14741 28010 28010 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 594.9061889648438 2 594.905548 1187.79654 0.52302 0.00031114 0.85647 0.00050952 1.3795 0.00082066 594.906035070789 108.4 0.11551 112.07 112.05 112.17 3.6751 17 9 2 0 0 0 0.56493 1 25669 25669 0.35063 0 1 5300000 + 23747 30144 14732 14741 28011 28011 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 594.905548 1187.79654 0.50834 0.00030242 0.31374 0.00018665 0.82209 0.00048906 594.9057438256569 108.22 0.31268 111.76 111.65 111.96 3.5382 -0.045938 1.4684E-05 NaN 0.35063 55 32 3 NaN NaN NaN NaN 0 NaN NaN 0 8171100 + 23748 30144 14732 14741 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 594.905548 1187.79654 0.41211 0.00024516 0.39819 0.00023688 0.81029 0.00048205 594.9056555156756 108.39 0.1724 112.02 111.95 112.12 3.6313 0.0054041 -2.736E-05 NaN 0.35063 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 2038700 + 23749 30144 14732 14741 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 594.905548 1187.79654 0.48439 0.00028817 0.54472 0.00032405 1.0291 0.00061222 594.9060041384631 107.86 0.22508 111.54 111.37 111.59 3.6783 -0.26614 0.0002895 NaN 0.35063 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 5234200 + 23750 30144 14732 14741 0.21015674804743867 LLKKTKTKTK 10 Unmodified _LLKKTKTKTK_ 0 0 0 REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense REV__L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|375|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 594.905548 1187.79654 0.48451 0.00028824 0.3352 0.00019941 0.81971 0.00048765 594.9056442185835 108.26 0.46744 111.93 111.72 112.19 3.6746 -0.083236 -0.0001023 NaN 0.35063 148 54 3 NaN NaN NaN NaN 0 NaN NaN 0 12548000 + 23751 30144 14732 14741 0.21015674804743867 LLKKVRKLM 9 Unmodified _LLKKVRKLM_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS UPN48_class_I_Rep_1 5 564.888427734375 2 564.886104 1127.75766 NaN NaN NaN NaN NaN NaN NaN 56.836 1 60.331 59.831 60.831 3.4954 0 0 0 0.4007 1 12262 12262 0.52476 0 1 + 23752 20254 14733 14742 28012 28012 0.19888670969362465 LLKLEEQV 8 Unmodified _LLKLEEQV_ 0 0 0 REV__CON__Q9TTE1 REV__CON__Q9TTE1 MULTI-MSMS UPN47_class_I_Rep_2 3 486.2923278808594 2 486.292225 970.569897 0.22084 0.00010739 -0.37862 -0.00018412 -0.15778 -7.673E-05 486.29191362308956 71.466 0.79671 74.756 74.471 75.268 3.2899 89 67 3 0 0 0 0.82752 1 17522 17522 14.838 0 1 153300 + + 23753 17466 14734 14743 28013 28013 0.08343511245811897 LLKLEQQENN 10 Unmodified _LLKLEQQENN_ 0 0 0 L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|1|1|sense L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|1|1|sense L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 614.83056640625 2 614.830234 1227.64592 NaN NaN NaN NaN NaN NaN NaN 45.542 1 45.542 45.042 46.042 0 0 0 0 0.53105 1 9269 9269 1.4819 0 1 23754 10532 14735 14744 28014 28014 0.04119863355299458 LLKLEQQENN 10 Unmodified _LLKLEQQENN_ 0 0 0 L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|1|1|sense L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|1|1|sense L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 614.8312377929688 2 614.830234 1227.64592 NaN NaN NaN NaN NaN NaN NaN 66.706 1 69.965 69.465 70.465 3.2588 0 0 0 0.53105 1 16042 16042 1.4819 0 1 23755 10532 14735 14744 28015 28015 0.04119863355299458 LLKLLQKLKRR 11 Unmodified _LLKLLQKLKRR_ 0 0 0 L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 470.3319091796875 3 470.332801 1407.97657 NaN NaN NaN NaN NaN NaN NaN 77.454 1 80.785 80.285 81.285 3.3315 0 0 0 0.38417 1 19213 19213 0 0 1 23756 10208 14736 14745 28016 28016 0.28890398532371364 LLKLLQKLKRR 11 Unmodified _LLKLLQKLKRR_ 0 0 0 L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 470.2583312988281 3 470.332801 1407.97657 NaN NaN NaN NaN NaN NaN NaN 72.386 1 75.859 75.359 76.359 3.4732 0 0 0 0.38417 1 16984 16984 0 0 1 23757 10208 14736 14745 28017 28017 0.28890398532371364 LLKLLQKLKRR 11 Unmodified _LLKLLQKLKRR_ 0 0 0 L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 470.7424621582031 3 470.332801 1407.97657 NaN NaN NaN NaN NaN NaN NaN 98.205 1 102.11 101.61 102.61 3.9022 0 0 0 0.38417 1 23272 23272 0 0 1 23758 10208 14736 14745 28018 28018 0.28890398532371364 LLKLVAHKK 9 Unmodified _LLKLVAHKK_ 0 0 0 REV__L1M5_dup42669|chr14:21248808-21248890:+|1.7637274126722595|0.0157791097031485|6.8|151.0|6|1|anti-sense REV__L1M5_dup42669|chr14:21248808-21248890:+|1.7637274126722595|0.0157791097031485|6.8|151.0|6|1|anti-sense MSMS UPN48_class_I_Rep_3 7 525.3630981445312 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 71.853 1 75.379 74.879 75.879 3.5266 0 0 0 0.40038 1 16715 16715 0.6015 0 1 + 23759 24676 14737 14746 28019 28019 0.18967768778634309 LLKLVLCV 8 Unmodified _LLKLVLCV_ 0 0 0 REV__L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|30|1|anti-sense REV__L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_2 3 450.8013000488281 2 450.801174 899.587796 NaN NaN NaN NaN NaN NaN NaN 35.874 1 39.285 38.785 39.785 3.4114 0 0 0 0.40738 1 6665 6665 0.79363 0 1 + 23760 25943 14738 14747 28020 28020 0.13398554966943266 LLKLYAIT 8 Unmodified _LLKLYAIT_ 0 0 0 REV__ENSG00000118777|ENST00000237612|ABCG2 REV__ENSG00000118777|ENST00000237612|ABCG2 MSMS UPN47_class_I_Rep_3 4 467.8011169433594 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 78.724 1 82.007 81.507 82.507 3.2828 0 0 0 0.40746 1 19643 19643 0.69038 0 1 + 23761 18659 14739 14748 28021 28021 0.12045306976403936 LLKPHHLL 8 Unmodified _LLKPHHLL_ 0 0 0 REV__ENSG00000078269|ENST00000355585|SYNJ2 REV__ENSG00000078269|ENST00000355585|SYNJ2 MULTI-MSMS UPN48_class_I_Rep_3 7 485.8117980957031 2 485.813462 969.612371 0.29394 0.0001428 -1.0141 -0.00049267 -0.72018 -0.00034987 485.8116239754483 68.522 0.33759 72.031 71.861 72.199 3.5094 35 26 2 0 0 0 0.82752 1 15729 15729 2.5775 0 1 123070 + 23762 17885 14740 14749 28022 28022 0.12634951164693575 LLKPILQF 8 Unmodified _LLKPILQF_ 0 0 0 REV__ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron REV__ENSG00000163625.16,WDFY3,chr4,-,I63.1,84690665,84691630|26|4.56|10|intron MSMS UPN46_class_I_Rep_3 1 486.31805419921875 2 486.318046 970.621539 NaN NaN NaN NaN NaN NaN NaN 67.964 1 67.964 67.464 68.464 0 0 0 0 0.40604 1 15494 15494 2.5775 0 1 + 23763 19989 14741 14750 28023 28023 0.13505299730366005 LLKPLSASFI 10 Unmodified _LLKPLSASFI_ 0 0 0 REV__L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|42|3|anti-sense REV__L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|42|3|anti-sense MSMS UPN47_class_I_Rep_2 3 544.839599609375 2 544.839342 1087.66413 NaN NaN NaN NaN NaN NaN NaN 68.973 1 72.243 71.743 72.743 3.2696 0 0 0 0.53105 1 16723 16723 5.2969 1.3525 1 + 23764 28630 14742 14751 28024 28024 0.12380650067939314 LLKPLSASFI 10 Unmodified _LLKPLSASFI_ 0 0 0 REV__L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|42|3|anti-sense REV__L1MEf_dup3817|chr5:146496232-146496675:-|1.6892293538967142|0.239519590138372|2.82|150.0|42|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.8386840820312 2 544.839342 1087.66413 0.43103 0.00023484 -0.53374 -0.0002908 -0.10271 -5.596E-05 544.8390657539097 69.61 0.32605 72.815 72.675 73.002 3.2044 29 25 2 0 0 0 0.56078 1 16971 16971 3.2813 0 1 60586 + 23765 28630 14742 14751 28025 28025 0.12380650067939314 LLKQGQVEL 9 Unmodified _LLKQGQVEL_ 0 0 0 ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-2|CFAP43 ENSG00000197748|ENST00000357060|CFAP43 ENSG00000197748|ENST00000357060|CFAP43 MULTI-MSMS UPN47_class_I_Rep_2 3 514.3114624023438 2 514.310949 1026.60735 0.10744 5.5259E-05 -0.023819 -1.2251E-05 0.083623 4.3008E-05 514.3108493692381 62.068 0.74043 65.328 64.929 65.67 3.2594 68 51 2 0 0 0 0.30034 1 14644 14644 13.906 1.6654 1 112730 23766 5390 14743 14752 28026 28026 0.09510602511431898 LLKQYKILLH 10 Unmodified _LLKQYKILLH_ 0 0 0 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3778076171875 2 634.908091 1267.80163 0.51362 0.0003261 0.5432 0.00034488 1.0568 0.00067099 634.9082655658572 105.65 0.12743 109.18 109.14 109.26 3.5308 22 19 2 0 0 0 0.84575 1 25862 25862 0.40072 0 1 580030 + 23767 19539 14744 14753 28027 28027 0.17843978667360716 LLKQYKILLH 10 Unmodified _LLKQYKILLH_ 0 0 0 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MATCH UPN47_class_I_Rep_1 2 2 634.908091 1267.80163 0.56746 0.00036028 0.35695 0.00022663 0.92441 0.00058692 634.9083390288718 105.74 0.068863 109.48 109.42 109.49 3.7395 0.24566 -0.00025959 NaN 0.40072 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 317780 + 23768 19539 14744 14753 0.17843978667360716 LLKQYKILLH 10 Unmodified _LLKQYKILLH_ 0 0 0 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MATCH UPN48_class_I_Rep_3 7 2 634.908091 1267.80163 0.62058 0.00039401 0.70384 0.00044687 1.3244 0.00084088 634.908460663821 105.47 0.062851 109.17 109.13 109.19 3.702 -0.065547 0.00018089 NaN 0.40072 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 199500 + 23769 19539 14744 14753 0.17843978667360716 LLKRLVLKH 9 Unmodified _LLKRLVLKH_ 0 0 0 L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|22|3|sense L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|22|3|sense L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|22|3|sense MSMS UPN48_class_I_Rep_3 7 560.3899536132812 2 560.389868 1118.76518 NaN NaN NaN NaN NaN NaN NaN 56.844 1 60.387 59.887 60.887 3.5427 0 0 0 0.4007 1 12178 12178 0.52476 0 1 23770 8979 14745 14754 28028 28028 0.21055146561320726 LLKRPFFFL 9 Unmodified _LLKRPFFFL_ 0 0 0 L1ME1_dup5121|chr2:229784141-229785472:+|2.192808914090365|0.1534320911011092|3.84|151.0|67|1|anti-sense L1ME1_dup5121|chr2:229784141-229785472:+|2.192808914090365|0.1534320911011092|3.84|151.0|67|1|anti-sense L1ME1_dup5121|chr2:229784141-229785472:+|2.192808914090365|0.1534320911011092|3.84|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_3 4 590.8662719726562 2 590.865695 1179.71684 NaN NaN NaN NaN NaN NaN NaN 96.346 1 99.76 99.26 100.26 3.414 0 0 0 0.40038 1 23903 23903 0.6015 0 1 23771 12413 14746 14755 28029 28029 0.13416652921409877 LLKSSPPGRRP 11 Unmodified _LLKSSPPGRRP_ 0 0 0 L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 403.2466735839844 3 403.247173 1206.71969 -0.41268 -0.00016641 -0.35519 -0.00014323 -0.76787 -0.00030964 403.24689883882144 96.893 0.33633 100.37 100.26 100.59 3.4791 74 46 3 0 0 0 0.65821 1 23787 23787 1.0136 0.051299 1 193270 23772 14277 14747 14756 28030 28030 0.12459876308275852 LLKSSPPGRRP 11 Unmodified _LLKSSPPGRRP_ 0 0 0 L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 403.2467346191406 3 403.247173 1206.71969 -0.61137 -0.00024653 -0.1594 -6.4276E-05 -0.77077 -0.00031081 403.24701641923775 96.996 0.46313 100.41 100.36 100.82 3.414 104 63 2 0 0 0 0.65821 1 24074 24074 1.0136 0.051299 1 173380 23773 14277 14747 14756 28031 28031 0.12459876308275852 LLKSSPPGRRP 11 Unmodified _LLKSSPPGRRP_ 0 0 0 L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|99|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 604.3673095703125 2 604.367121 1206.71969 0.54627 0.00033015 -1.1584 -0.0007001 -0.61213 -0.00036995 604.3663846786433 107.35 0.15176 111.03 110.88 111.04 3.6813 17 9 3 0 0 0 0.61292 1 25306 25306 4.897 0.95262 1 721650 23774 14277 14747 14756 28032 28032 0.12459876308275852 LLKSYKIKRER 11 Unmodified _LLKSYKIKRER_ 0 0 0 REV__ENSG00000185156|ENST00000329805|MFSD6L REV__ENSG00000185156|ENST00000329805|MFSD6L MULTI-SECPEP UPN48_class_I_Rep_2 6 478.7397766113281 3 478.636549 1432.88782 0.24883 0.0001191 2.5497 0.0012204 2.7985 0.0013395 478.6372292695389 66.765 0.07637 70.251 70.19 70.266 3.4866 6 4 2 0 0 0 22.551 1 15277 15277 0.40827 0 1 80148 + 23775 20844 14748 14757 28033 28033 0.1886893850207798 LLKTSIYNV 9 Unmodified _LLKTSIYNV_ 0 0 0 REV__L1MB7_dup22747|chr22:45144964-45145837:-|1.4736544439642898|0.2082856773061819|2.82|151.0|35|3|sense REV__L1MB7_dup22747|chr22:45144964-45145837:-|1.4736544439642898|0.2082856773061819|2.82|151.0|35|3|sense MSMS UPN47_class_I_Rep_3 4 526.2587280273438 2 525.813325 1049.6121 NaN NaN NaN NaN NaN NaN NaN 34.924 1 38.188 37.688 38.688 3.2639 0 0 0 0.38639 1 6406 6406 3.9444 0.3479 1 + 23776 26229 14749 14758 28034 28034 0.08927486654170025 LLKVIIHKPI 10 Unmodified _LLKVIIHKPI_ 0 0 0 REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|21|1|sense REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|21|1|sense MSMS UPN48_class_I_Rep_1 5 587.4088745117188 2 587.407727 1172.8009 NaN NaN NaN NaN NaN NaN NaN 92.746 1 96.37 95.87 96.87 3.624 0 0 0 0.53105 1 22285 22285 0 0 1 + 23777 28733 14750 14759 28035 28035 0.22141184018346394 LLKVIKKFSK 10 Unmodified _LLKVIKKFSK_ 0 0 0 L1MB7_dup22385|chr21:44411057-44412642:-|2.117573440721522|0.1040889759349694|4.35|150.0|48|3|sense L1MB7_dup22385|chr21:44411057-44412642:-|2.117573440721522|0.1040889759349694|4.35|150.0|48|3|sense L1MB7_dup22385|chr21:44411057-44412642:-|2.117573440721522|0.1040889759349694|4.35|150.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 602.4115600585938 2 602.413009 1202.81146 NaN NaN NaN NaN NaN NaN NaN 110.11 1 113.65 113.15 114.15 3.5347 0 0 0 0.53105 1 27044 27044 0.40072 0 1 23778 10804 14751 14760 28036 28036 0.21817166672735766 LLKVTNIK 8 Unmodified _LLKVTNIK_ 0 0 0 L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|143|3|sense L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|143|3|sense L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|143|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 464.8124694824219 2 464.813128 927.611703 -0.39405 -0.00018316 -0.00064863 -3.0149E-07 -0.3947 -0.00018346 464.81298347013217 31.607 0.60941 35.076 34.903 35.513 3.4691 57 46 2 0 0 0 0.82752 1 5374 5374 4.3292 0 1 79641 23779 14824 14752 14761 28037 28037 0.1450011172497625 LLKWHWPC 8 Unmodified _LLKWHWPC_ 0 0 0 REV__ENST00000439875.1_1_9:115871246-115871747:-|nuORF REV__ENST00000439875.1_1_9:115871246-115871747:-|nuORF MSMS UPN47_class_I_Rep_2 3 541.7847290039062 2 541.783847 1081.55314 NaN NaN NaN NaN NaN NaN NaN 51.385 1 54.723 54.223 55.223 3.3386 0 0 0 0.40604 1 11378 11378 2.5775 0.27475 1 + 23780 22324 14753 14762 28038 28038 0.015627318788574485 LLKWPVLR 8 Unmodified _LLKWPVLR_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|75|1|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|75|1|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|75|1|anti-sense MSMS UPN47_class_I_Rep_2 3 512.8228149414062 2 512.836937 1023.65932 NaN NaN NaN NaN NaN NaN NaN 69.214 1 72.49 71.99 72.99 3.2761 0 0 0 0.40746 1 16794 16794 0.69038 0 1 23781 8199 14754 14763 28039 28039 0.14843810715842665 LLKYRQRF 8 Unmodified _LLKYRQRF_ 0 0 0 THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|95|3|anti-sense THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|95|3|anti-sense THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_2 6 562.3418579101562 2 562.340375 1122.6662 NaN NaN NaN NaN NaN NaN NaN 73.137 1 76.702 76.202 77.202 3.5645 0 0 0 0.40604 1 17161 17161 2.5775 0 1 23782 32913 14755 14764 28040 28040 0.10977123596398997 LLLAELEQL 9 Unmodified _LLLAELEQL_ 0 0 0 REV__ENSG00000151136.15,BTBD11,chr12,+,I12.1,107618379,107619985|37|4.73|3|intron REV__ENSG00000151136.15,BTBD11,chr12,+,I12.1,107618379,107619985|37|4.73|3|intron MSMS UPN46_class_I_Rep_3 1 521.3131103515625 2 521.313158 1040.61176 NaN NaN NaN NaN NaN NaN NaN 91.825 1 91.825 91.325 92.325 0 0 0 0 0.098423 1 22196 22196 24.991 0 1 + 23783 19646 14756 14765 28041 28041 0.09308066934318049 LLLARHWW 8 Unmodified _LLLARHWW_ 0 0 0 ENSG00000115839.18,RAB3GAP1,chr2,+,I26.1,135170711,135175326|91|6.73|1|intron ENSG00000115839.18,RAB3GAP1,chr2,+,I26.1,135170711,135175326|91|6.73|1|intron ENSG00000115839.18,RAB3GAP1,chr2,+,I26.1,135170711,135175326|91|6.73|1|intron MSMS UPN48_class_I_Rep_2 6 547.8155517578125 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 27.876 1 31.507 31.007 32.007 3.6311 0 0 0 0.40738 1 3759 3759 0.79363 0.10326 1 23784 2144 14757 14766 28042 28042 0.0754546939622287 LLLARPLR 8 Unmodified _LLLARPLR_ 0 0 0 REV__ENSG00000178202|ENST00000323468|POGLUT3 REV__ENSG00000178202|ENST00000323468|POGLUT3 MULTI-MSMS UPN48_class_I_Rep_3 7 476.3271789550781 2 476.326737 950.63892 0.21447 0.00010216 0.48494 0.00023099 0.69941 0.00033315 476.3268719533161 110.64 0.06189 114.31 114.28 114.34 3.6654 9 6 2 0 0 0 0.82752 1 26257 26257 0.69038 0 1 36850 + 23785 20645 14758 14767 28043 28043 0.161626400560408 LLLARPLR 8 Unmodified _LLLARPLR_ 0 0 0 REV__ENSG00000178202|ENST00000323468|POGLUT3 REV__ENSG00000178202|ENST00000323468|POGLUT3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 476.326737 950.63892 0.22354 0.00010648 -0.45628 -0.00021734 -0.23274 -0.00011086 476.32626314999663 110.63 0.036819 114.3 114.27 114.31 3.669 -0.0037262 -0.00057863 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 40785 + 23786 20645 14758 14767 0.161626400560408 LLLARPLR 8 Unmodified _LLLARPLR_ 0 0 0 REV__ENSG00000178202|ENST00000323468|POGLUT3 REV__ENSG00000178202|ENST00000323468|POGLUT3 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 476.326737 950.63892 0.21447 0.00010216 0.48494 0.00023099 0.69941 0.00033315 476.3268719533161 110.64 0.06189 114.31 114.28 114.34 3.6654 0.0037262 0.00031803 NaN 0.69038 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 36850 + 23787 20645 14758 14767 0.161626400560408 LLLCFRFC 8 Unmodified _LLLCFRFC_ 0 0 0 REV__L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|94|2|anti-sense REV__L1MCa_dup4590|chrX:136719019-136721138:+|5.33659648419687|0.0513117802867922|6.7|151.0|94|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.7663269042969 2 507.766809 1013.51906 -0.28711 -0.00014579 -0.68569 -0.00034817 -0.9728 -0.00049396 507.76632041261973 13.057 0.25081 16.514 16.425 16.675 3.457 32 23 2 0 0 0 0.82752 1 236 236 2.5775 0 1 90990 + 23788 27209 14759 14768 28044 28044 0.012845673956007886 LLLCHRFPL 9 Unmodified _LLLCHRFPL_ 0 0 0 ENST00000576603.5_1_17:80889830-80900336:+|nuORF;nc|ENSG00000141556|Q9BTW9-2|TBCD;ENST00000576677.5_1_17:80888388-80900336:+|nuORF;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENSG00000141556|ENST00000355528|TBCD ENST00000576603.5_1_17:80889830-80900336:+|nuORF;nc|ENSG00000141556|Q9BTW9-4|TBCD ENST00000576603.5_1_17:80889830-80900336:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 556.7811889648438 2 556.325879 1110.63721 0.465 0.00025869 1.6579 0.00092235 2.1229 0.001181 556.3268473029536 53.99 0.47454 57.175 56.928 57.403 3.1856 43 29 2 0 0 0 0.12235 1 12148 12148 4.756 2.1785 1 97375 23789 7532;3225 14760 14769 28045 28045 0.0863126297576855 LLLCWWDC 8 Unmodified _LLLCWWDC_ 0 0 0 L1PA5_dup2264|chr3:149943811-149945301:-|1.9180183213124509|0.0747675947018303|4.68|151.0|25|2|sense L1PA5_dup2264|chr3:149943811-149945301:-|1.9180183213124509|0.0747675947018303|4.68|151.0|25|2|sense L1PA5_dup2264|chr3:149943811-149945301:-|1.9180183213124509|0.0747675947018303|4.68|151.0|25|2|sense MSMS UPN48_class_I_Rep_1 5 526.241455078125 2 526.240624 1050.46669 NaN NaN NaN NaN NaN NaN NaN 88.816 1 92.439 91.939 92.939 3.6229 0 0 0 0.40581 1 21311 21311 2.8892 0 1 23790 14444 14761 14770 28046 28046 -0.05652015738019145 LLLDFRVIGRF 11 Unmodified _LLLDFRVIGRF_ 0 0 0 ENSG00000185164.14,NOMO2,chr16,-,I40.1,18418485,18424273|38|5.65|1|intron;ENSG00000185164.14,NOMO2,chr16,-,I31.1,18501084,18506872|27|5.71|1|intron ENSG00000185164.14,NOMO2,chr16,-,I40.1,18418485,18424273|38|5.65|1|intron ENSG00000185164.14,NOMO2,chr16,-,I40.1,18418485,18424273|38|5.65|1|intron MSMS UPN47_class_I_Rep_2 3 450.2749938964844 3 450.27484 1347.80269 NaN NaN NaN NaN NaN NaN NaN 86.877 1 90.318 89.818 90.818 3.4407 0 0 0 0.38417 1 21604 21604 0.45452 0 1 23791 5090 14762 14771 28047 28047 0.14270193036236378 LLLDHQAVF 9 Unmodified _LLLDHQAVF_ 0 0 0 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 MULTI-MSMS UPN48_class_I_Rep_2 6 528.2982788085938 2 528.297842 1054.58113 0.45228 0.00023894 0.026999 1.4263E-05 0.47928 0.0002532 528.2979131370688 63.685 0.34417 67.16 66.99 67.334 3.4743 26 18 3 0 0 0 0.30034 1 14339 14339 13.906 0 1 394840 23792 3168 14763 14772 28048 28048 0.056023333399252806 LLLDKDII 8 Unmodified _LLLDKDII_ 0 0 0 REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|199|2|anti-sense REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|199|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.666 1 79.997 79.497 80.497 3.3315 0 0 0 0.40364 1 18985 18985 5.7604 0 1 + 23793 24040 14764 14773 28049 28049 0.10660699251184269 LLLDLPLAD 9 Unmodified _LLLDLPLAD_ 0 0 0 REV__nc|ENSG00000102854|Q13421-4|MSLN REV__nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS UPN48_class_I_Rep_2 6 492.29766845703125 2 491.794601 981.574648 0.33194 0.00016325 3.4084 0.0016762 3.7403 0.0018395 491.79662556288713 60.924 0.18109 64.403 64.27 64.451 3.4785 26 16 2 0 0 0 0.09884 1 13467 13467 34.102 0 1 104570 + 23794 18203 14765 14774 28050 28050 0.08312395388566074 LLLDLPLAD 9 Unmodified _LLLDLPLAD_ 0 0 0 REV__nc|ENSG00000102854|Q13421-4|MSLN REV__nc|ENSG00000102854|Q13421-4|MSLN MULTI-MATCH UPN46_class_I_Rep_3 1 2 491.794601 981.574648 0.23462 0.00011539 2.7924 0.0013733 3.0271 0.0014887 491.79594687084233 64.231 0.075302 64.231 64.219 64.294 0 -0.085793 -0.00027132 NaN 34.102 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 125730 + 23795 18203 14765 14774 0.08312395388566074 LLLDLQLRLW 10 Unmodified _LLLDLQLRLW_ 0 0 0 ENST00000370185.7_3_1:99753608-99762303:+|nuORF ENST00000370185.7_3_1:99753608-99762303:+|nuORF ENST00000370185.7_3_1:99753608-99762303:+|nuORF MSMS UPN48_class_I_Rep_3 7 641.901123046875 2 641.897723 1281.78089 NaN NaN NaN NaN NaN NaN NaN 86.032 1 89.802 89.302 90.302 3.7701 0 0 0 0.53105 1 20421 20421 1.4819 0 1 23796 6379 14766 14775 28051 28051 0.15127388287692156 LLLDYDTGSEE 11 Unmodified _LLLDYDTGSEE_ 0 0 0 ENSG00000122122|ENST00000356892|SASH3 ENSG00000122122|ENST00000356892|SASH3 ENSG00000122122|ENST00000356892|SASH3 MSMS UPN47_class_I_Rep_2 3 627.7910766601562 2 627.79044 1253.56633 NaN NaN NaN NaN NaN NaN NaN 50.297 1 53.64 53.14 54.14 3.3431 0 0 0 0.38417 1 11043 11043 2.9952 0.93549 1 23797 2376 14767 14776 28052 28052 -0.0503124810936697 LLLEEELKI 9 Unmodified _LLLEEELKI_ 0 0 0 REV__Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|39|2|sense REV__Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|39|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.335205078125 2 550.33409 1098.65363 0.59463 0.00032725 0.93792 0.00051617 1.5326 0.00084341 550.3344698241053 54.603 0.35784 58.184 57.916 58.273 3.5817 33 24 2 0 0 0 0.43153 1 11550 11550 6.2058 6.2058 1 168150 + 23798 32491 14768 14777 28053 28053 0.10824622622840252 LLLEKMLL 8 Unmodified _LLLEKMLL_ 0 0 0 L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|70|2|sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|70|2|sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|70|2|sense MSMS UPN47_class_I_Rep_2 3 486.79949951171875 2 486.811739 971.608925 NaN NaN NaN NaN NaN NaN NaN 50.668 1 54.007 53.507 54.507 3.3386 0 0 0 0.40364 1 11157 11157 5.7604 0 1 23799 12239 14769 14778 28054 28054 0.12198520275831015 LLLELQLH 8 Unmodified _LLLELQLH_ 0 0 0 L1MEf_dup10483|chr17:35689862-35690881:-|1.5488608024145485|0.0502164318061134|4.95|151.0|61|3|anti-sense L1MEf_dup10483|chr17:35689862-35690881:-|1.5488608024145485|0.0502164318061134|4.95|151.0|61|3|anti-sense L1MEf_dup10483|chr17:35689862-35690881:-|1.5488608024145485|0.0502164318061134|4.95|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.302734375 2 489.80276 977.590967 0.25097 0.00012292 3.8629 0.0018921 4.1139 0.002015 489.8059986086263 70.711 0.61015 73.994 73.711 74.321 3.2828 76 57 2 0 0 0 0.82752 1 17289 17289 0.69038 0 1 233860 23800 13227 14770 14779 28055 28055 0.1012752134532775 LLLEPGAMK 9 Unmodified _LLLEPGAMK_ 0 0 0 REV__ENST00000487465.5_1_3:10011273-10028351:-|nuORF REV__ENST00000487465.5_1_3:10011273-10028351:-|nuORF MSMS UPN48_class_I_Rep_2 6 486.2855529785156 2 486.283346 970.552139 NaN NaN NaN NaN NaN NaN NaN 77.221 1 80.832 80.332 81.332 3.6116 0 0 0 0.35339 1 18266 18266 7.9102 0 1 + 23801 22608 14771 14780 28056 28056 0.06568472719311558 LLLFEYRH 8 Unmodified _LLLFEYRH_ 0 0 0 ENSG00000184194|ENST00000332582|GPR173 ENSG00000184194|ENST00000332582|GPR173 ENSG00000184194|ENST00000332582|GPR173 MSMS UPN48_class_I_Rep_3 7 546.0570068359375 2 545.805834 1089.59712 NaN NaN NaN NaN NaN NaN NaN 42.199 1 45.841 45.341 46.341 3.6415 0 0 0 0.40604 1 7707 7707 2.5775 0 1 23802 5039 14772 14781 28057 28057 0.055900395768503586 LLLFFHKPY 9 Unmodified _LLLFFHKPY_ 0 0 0 REV__L1ME4a_dup4384|chr2:126681051-126681539:-|1.831365129494712|0.0693131555280334|4.72|151.0|39|3|anti-sense REV__L1ME4a_dup4384|chr2:126681051-126681539:-|1.831365129494712|0.0693131555280334|4.72|151.0|39|3|anti-sense MSMS UPN47_class_I_Rep_2 3 589.343017578125 2 589.342052 1176.66955 NaN NaN NaN NaN NaN NaN NaN 97.212 1 100.7 100.2 101.2 3.4836 0 0 0 0.4007 1 23873 23873 0.52476 0 1 + 23803 28237 14773 14782 28058 28058 0.08828373650408139 LLLFKYLKRD 10 Unmodified _LLLFKYLKRD_ 0 0 0 REV__nc|ENSG00000176095|Q92551-2|IP6K1 REV__nc|ENSG00000176095|Q92551-2|IP6K1 MULTI-MSMS UPN48_class_I_Rep_1 5 436.9395446777344 3 436.939458 1307.79654 -0.050378 -2.2012E-05 0.63623 0.00027799 0.58585 0.00025598 437.2741189410975 46.502 0.50916 50.021 49.771 50.281 3.5192 51 30 2 0 0 0 0.56433 1 9120 9120 0.77653 0.21336 1 398520 + 23804 20575 14774 14783 28059 28059 0.15495674804719783 LLLFLRWGIAR 11 Unmodified _LLLFLRWGIAR_ 0 0 0 REV__ENSG00000253352|ENST00000644773|TUG1 REV__ENSG00000253352|ENST00000644773|TUG1 MSMS UPN47_class_I_Rep_1 2 453.2850646972656 3 453.28708 1356.83941 NaN NaN NaN NaN NaN NaN NaN 79.141 1 82.587 82.087 83.087 3.4456 0 0 0 0.38417 1 19706 19706 2.8433 1.5136 1 + 23805 21365 14775 14784 28060 28060 0.17526489652846067 LLLFPFLF 8 Unmodified _LLLFPFLF_ 0 0 0 REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|84|2|anti-sense REV__L1MC1_dup4461|chr5:81677201-81679004:+|1.1180639432145911|0.0130206553909101|6.42|151.0|84|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 504.8090515136719 2 505.30969 1008.60483 0.29509 0.00014911 0.56808 0.00028706 0.86317 0.00043617 505.31065040180033 43.163 0.15363 43.163 43.12 43.274 0 14 9 3 0 0 0 0.72333 1 8603 8603 0 0 1 384420 + 23806 26556 14776 14785 28061 28061 0.10086798844429268 LLLFQKVQKI 10 Unmodified _LLLFQKVQKI_ 0 0 0 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 MSMS UPN48_class_I_Rep_2 6 615.6944580078125 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 115.22 1 118.89 118.39 119.39 3.6616 0 0 0 0.53105 1 27572 27572 0.45834 0 1 + 23807 18857 14777 14786 28062 28062 0.1854857629309663 LLLHKNCPK 9 Unmodified _LLLHKNCPK_ 0 0 0 MLT1F1_dup2857|chr18:46196608-46197149:-|1.4802048741954654|0.0061115939558569|7.92|151.0|31|2|anti-sense MLT1F1_dup2857|chr18:46196608-46197149:-|1.4802048741954654|0.0061115939558569|7.92|151.0|31|2|anti-sense MLT1F1_dup2857|chr18:46196608-46197149:-|1.4802048741954654|0.0061115939558569|7.92|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 533.3152465820312 2 533.315512 1064.61647 NaN NaN NaN NaN NaN NaN NaN 57.966 1 57.966 57.466 58.466 0 0 0 0 0.38299 1 12732 12732 4.756 0 1 23808 16389 14778 14787 28063 28063 0.08674672596112032 LLLIEDRA 8 Unmodified _LLLIEDRA_ 0 0 0 REV__nc|ENSG00000163681|Q14BN4-4|SLMAP REV__nc|ENSG00000163681|Q14BN4-4|SLMAP MSMS UPN48_class_I_Rep_2 6 471.78302001953125 2 471.784567 941.554582 NaN NaN NaN NaN NaN NaN NaN 47.569 1 51.305 50.805 51.805 3.7361 0 0 0 0.40738 1 9409 9409 0.79363 0 1 + 23809 19997 14779 14788 28064 28064 0.08146644448606821 LLLIEQIT 8 Unmodified _LLLIEQIT_ 0 0 0 REV__L1MB7_dup18573|chr15:99656801-99657304:-|1.1771454189956627|0.0790570733482495|3.9|151.0|11|2|sense REV__L1MB7_dup18573|chr15:99656801-99657304:-|1.1771454189956627|0.0790570733482495|3.9|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 471.7957763671875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.967 1 53.31 52.81 53.81 3.3431 0 0 0 0.39408 1 10942 10942 10.183 0 1 + 23810 26187 14780 14789 28065 28065 0.10660699251184269 LLLIFHGM 8 Unmodified _LLLIFHGM_ 0 0 0 L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|35|2|anti-sense L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|35|2|anti-sense L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_1 5 471.79534912109375 2 472.275324 942.536095 NaN NaN NaN NaN NaN NaN NaN 66.807 1 70.258 69.758 70.758 3.4516 0 0 0 0.40738 1 15305 15305 0.79363 0 1 23811 11985 14781 14790 28066 28066 0.06252811273066072 LLLIGWRALI 10 Unmodified _LLLIGWRALI_ 0 0 0 HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|2|1|sense HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|2|1|sense HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 584.8557739257812 2 584.384251 1166.75395 NaN NaN NaN NaN NaN NaN NaN 108.16 1 111.8 111.3 112.3 3.6313 0 0 0 0.53105 1 26148 26148 3.9444 0 1 23812 8360 14782 14791 28067 28067 0.17724324467189945 LLLIHKKH 8 Unmodified _LLLIHKKH_ 0 0 0 Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|44|1|anti-sense Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|44|1|anti-sense Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_3 4 501.3365478515625 2 501.334562 1000.65457 NaN NaN NaN NaN NaN NaN NaN 102.22 1 105.7 105.2 106.2 3.4873 0 0 0 0.40738 1 25141 25141 0.79363 0 1 23813 33059 14783 14792 28068 28068 0.154269265730818 LLLIIKKIKR 10 Unmodified _LLLIIKKIKR_ 0 0 0 L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 619.4572143554688 2 619.457751 1236.90095 NaN NaN NaN NaN NaN NaN NaN 83.711 1 87.298 86.798 87.798 3.5871 0 0 0 0.53105 1 20027 20027 0 0 1 23814 12405 14784 14793 28069 28069 0.29197421352091624 LLLILILTT 9 Unmodified _LLLILILTT_ 0 0 0 REV__ERV3-16A3_I-int_dup2720|chr6:73286914-73288329:+|1.3917030102296912|0.1382337796221882|3.33|151.0|43|3|sense REV__ERV3-16A3_I-int_dup2720|chr6:73286914-73288329:+|1.3917030102296912|0.1382337796221882|3.33|151.0|43|3|sense MSMS UPN48_class_I_Rep_2 6 506.8529357910156 2 506.854461 1011.69437 NaN NaN NaN NaN NaN NaN NaN 109.9 1 113.57 113.07 114.07 3.6715 0 0 0 0.381 1 26168 26168 5.2307 0 1 + 23815 23246 14785 14794 28070 28070 0.18899008733114897 LLLILLHYSYL 11 Unmodified _LLLILLHYSYL_ 0 0 0 REV__L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|38|1|anti-sense REV__L1ME3B_dup4235|chr9:90859060-90859912:-|2.222604020997091|0.0791974539608873|4.81|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.279541015625 3 454.27948 1359.81661 NaN NaN NaN NaN NaN NaN NaN 44.341 1 47.696 47.196 48.196 3.3556 0 0 0 0.38417 1 9237 9237 1.2148 0.20126 1 + 23816 28059 14786 14795 28071 28071 0.15109425744685723 LLLILQTHRLK 11 Unmodified _LLLILQTHRLK_ 0 0 0 THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|47|3|sense THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|47|3|sense THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 450.2747497558594 3 449.966007 1346.87619 0.16505 7.4266E-05 -0.79084 -0.00035585 -0.6258 -0.00028159 449.96571642701826 108.07 0.16446 111.75 111.67 111.83 3.6813 16 13 2 0 0 0 0.68478 1 25539 25539 0.094841 0.094841 1 696820 23817 32900 14787 14796 28072 28072 0.2166274147873537 LLLILQTHRLK 11 Unmodified _LLLILQTHRLK_ 0 0 0 THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|47|3|sense THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|47|3|sense THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|47|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 449.966007 1346.87619 0.15004 6.7513E-05 -0.91794 -0.00041304 -0.7679 -0.00034553 450.2995624049206 108.1 0.071266 111.77 111.72 111.79 3.6746 0.0098437 -0.00015694 NaN 0.094841 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1102900 23818 32900 14787 14796 0.2166274147873537 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7951354980469 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 40.469 1 44.141 43.641 44.641 3.6719 0 0 0 0.381 1 8028 8028 5.2307 2.3415 1 23819 9455 14788 14797 28073 28073 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79595947265625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 47.591 1 51.286 50.786 51.786 3.6951 0 0 0 0.39326 1 10192 10192 2.3027 1.5091 1 23820 9455 14788 14797 28074 28074 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 55.326 1 58.804 58.304 59.304 3.4785 0 0 0 0.39326 1 12549 12549 2.3027 0.24298 1 23821 9455 14788 14797 28075 28075 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7947082519531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 42.586 1 45.947 45.447 46.447 3.3611 0 0 0 0.381 1 8700 8700 5.2307 2.3415 1 23822 9455 14788 14797 28076 28076 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 44.866 1 48.221 47.721 48.721 3.3556 0 0 0 0.39326 1 9399 9399 2.3027 1.5091 1 23823 9455 14788 14797 28077 28077 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.795654296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 55.988 1 59.293 58.793 59.793 3.3056 0 0 0 0.39326 1 12781 12781 2.3027 1.5091 1 23824 9455 14788 14797 28078 28078 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 71.352 1 74.642 74.142 75.142 3.2899 0 0 0 0.39326 1 17433 17433 2.3027 1.5091 1 23825 9455 14788 14797 28079 28079 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7956848144531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 75.637 1 78.959 78.459 79.459 3.3216 0 0 0 0.39326 1 18685 18685 2.3027 1.5091 1 23826 9455 14788 14797 28080 28080 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79461669921875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 56.074 1 59.246 58.746 59.746 3.1721 0 0 0 0.381 1 12864 12864 5.2307 2.3415 1 23827 9455 14788 14797 28081 28081 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7953796386719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 45.553 1 49.069 48.569 49.569 3.5162 0 0 0 0.39326 1 8796 8796 2.3027 0.24298 1 23828 9455 14788 14797 28082 28082 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.79638671875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 45.777 1 49.535 49.035 50.035 3.7579 0 0 0 0.39326 1 8872 8872 2.3027 1.5091 1 23829 9455 14788 14797 28083 28083 0.10660699251184269 LLLISSSIP 9 Unmodified _LLLISSSIP_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense;L1MB4_dup6520|chr13:20015059-20017041:-|2.454832687303198|0.0572768710803538|5.42|151.0|103|2|anti-sense;L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|105|2|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|150|1|anti-sense MSMS UPN48_class_I_Rep_3 7 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 60.664 1 64.177 63.677 64.677 3.5128 0 0 0 0.381 1 13347 13347 5.2307 2.3415 1 23830 9455 14788 14797 28084 28084 0.10660699251184269 LLLIVEDE 8 Unmodified _LLLIVEDE_ 0 0 0 REV__ENSG00000188827|ENST00000294008|SLX4 REV__ENSG00000188827|ENST00000294008|SLX4 MULTI-SECPEP UPN48_class_I_Rep_2 6 471.7684326171875 2 472.270958 942.527364 0.15917 7.5173E-05 -2.762 -0.0013044 -2.6028 -0.0012292 472.26983382632295 49.67 0.19428 53.365 53.203 53.397 3.6946 14 12 2 0 0 0 0.72333 1 10048 10048 0.79363 0 1 51713 + 23831 20987 14789 14798 28085 28085 0.05380116117567013 LLLIVYHCM 9 Unmodified _LLLIVYHCM_ 0 0 0 REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|54|2|anti-sense REV__Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 553.2147216796875 2 552.800848 1103.58714 NaN NaN NaN NaN NaN NaN NaN 115.85 1 119.44 118.94 119.94 3.5943 0 0 0 0.40038 1 28675 28675 0.6015 0 1 + 23832 32738 14790 14799 28086 28086 0.0394939225559483 LLLKESRELR 10 Unmodified _LLLKESRELR_ 0 0 0 L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|40|2|sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|40|2|sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|40|2|sense MSMS UPN48_class_I_Rep_2 6 628.8898315429688 2 628.887887 1255.76122 NaN NaN NaN NaN NaN NaN NaN 103.17 1 106.88 106.38 107.38 3.7108 0 0 0 0.53105 1 24424 24424 12.241 2.8575 1 23833 8581 14791 14800 28087 28087 0.1435701227694608 LLLKGDRR 8 Unmodified _LLLKGDRR_ 0 0 0 REV__ENSG00000173376|ENST00000379692|NDNF REV__ENSG00000173376|ENST00000379692|NDNF MSMS UPN47_class_I_Rep_1 2 485.81207275390625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.346 1 72.714 72.214 73.214 3.3678 0 0 0 0.40746 1 16797 16797 0.69038 0 1 + 23834 20483 14792 14801 28088 28088 0.12232861670997863 LLLKGDRR 8 Unmodified _LLLKGDRR_ 0 0 0 REV__ENSG00000173376|ENST00000379692|NDNF REV__ENSG00000173376|ENST00000379692|NDNF MSMS UPN47_class_I_Rep_3 4 485.81219482421875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.102 1 75.32 74.82 75.82 3.2188 0 0 0 0.40746 1 17729 17729 0.69038 0 1 + 23835 20483 14792 14801 28089 28089 0.12232861670997863 LLLKGDRR 8 Unmodified _LLLKGDRR_ 0 0 0 REV__ENSG00000173376|ENST00000379692|NDNF REV__ENSG00000173376|ENST00000379692|NDNF MSMS UPN47_class_I_Rep_3 4 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 97.197 1 100.62 100.12 101.12 3.4216 0 0 0 0.40746 1 24098 24098 0.69038 0 1 + 23836 20483 14792 14801 28090 28090 0.12232861670997863 LLLKGKYK 8 Unmodified _LLLKGKYK_ 0 0 0 REV__ENST00000280200.8_3_18:67530286-67530424:-|nuORF REV__ENST00000280200.8_3_18:67530286-67530424:-|nuORF MSMS UPN46_class_I_Rep_3 1 481.8877258300781 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 90.396 1 90.396 89.896 90.896 0 0 0 0 0.40746 1 21798 21798 0.69038 0 1 + 23837 21620 14793 14802 28091 28091 0.15008702104660188 LLLKKLHKFK 10 Unmodified _LLLKKLHKFK_ 0 0 0 REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF MSMS UPN46_class_I_Rep_3 1 423.29010009765625 3 423.291943 1266.854 NaN NaN NaN NaN NaN NaN NaN 13.99 1 13.99 13.49 14.49 0 0 0 0 0.53105 1 522 522 0.15932 0.064481 1 + 23838 18183 14794 14803 28092 28092 0.23124561800977972 LLLKLELE 8 Unmodified _LLLKLELE_ 0 0 0 L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|61|3|anti-sense L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|61|3|anti-sense L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8115539550781 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 111.53 1 115.05 114.55 115.55 3.5226 0 0 0 0.40604 1 27149 27149 2.5775 0 1 23839 12006 14795 14804 28093 28093 0.12501272285271625 LLLKLHPH 8 Unmodified _LLLKLHPH_ 0 0 0 REV__MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|11|2|sense REV__MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 68.262 1 71.46 70.96 71.96 3.1977 0 0 0 0.40738 1 16575 16575 0.79363 0 1 + 23840 31554 14796 14805 28094 28094 0.12634951164693575 LLLKLVIAL 9 Unmodified _LLLKLVIAL_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|213|1|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|213|1|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|213|1|anti-sense MSMS UPN47_class_I_Rep_2 3 498.3641052246094 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.454 1 66.71 66.21 67.21 3.2558 0 0 0 0.40038 1 15055 15055 0.6015 0 1 23841 13695 14797 14806 28095 28095 0.21787018832628746 LLLKNANN 8 Unmodified _LLLKNANN_ 0 0 0 Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|90|2|anti-sense;Tigger1_dup5527|chr7:30257778-30259716:+|3.6996639764863257|0.0668127375379857|5.79|151.0|100|2|anti-sense;Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|82|1|anti-sense;Tigger1_dup7710|chrX:134402647-134405032:+|1.0198346954577744|0.1392758092483212|2.87|151.0|110|2|anti-sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|90|2|anti-sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|90|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.77032470703125 2 450.269084 898.523616 -0.3677 -0.00016556 -0.38513 -0.00017341 -0.75283 -0.00033898 450.2688336164344 45.574 0.63158 48.928 48.7 49.331 3.3535 49 39 2 0 0 0 0.82752 1 9586 9586 0.69038 0 1 67931 23842 33049 14798 14807 28096 28096 0.07029491134369437 LLLKRLGR 8 Unmodified _LLLKRLGR_ 0 0 0 REV__MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense REV__MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 485.27374267578125 2 484.840011 967.665469 0.1327 6.4339E-05 0.46955 0.00022765 0.60225 0.00029199 484.84032395881064 108.63 0.27678 112.26 112.19 112.47 3.6321 44 31 2 0 0 0 0.72333 1 26353 26353 0.69038 0 1 5785600 + 23843 31854 14799 14808 28097 28097 0.1803432894737398 LLLLARVFPQ 10 Unmodified _LLLLARVFPQ_ 0 0 0 MLT1F2_dup1934|chr5:76469877-76470419:-|1.35500961982728|0.0073744760472338|7.52|150.0|36|3|anti-sense MLT1F2_dup1934|chr5:76469877-76470419:-|1.35500961982728|0.0073744760472338|7.52|150.0|36|3|anti-sense MLT1F2_dup1934|chr5:76469877-76470419:-|1.35500961982728|0.0073744760472338|7.52|150.0|36|3|anti-sense MSMS UPN47_class_I_Rep_3 4 585.3746948242188 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 46.636 1 49.88 49.38 50.38 3.2439 0 0 0 0.53105 1 9995 9995 0.45834 0 1 23844 16393 14800 14809 28098 28098 0.15559734087514698 LLLLDHNT 8 Unmodified _LLLLDHNT_ 0 0 0 L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|43|3|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|43|3|sense L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|43|3|sense MSMS UPN48_class_I_Rep_3 7 469.7697448730469 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 34.163 1 37.843 37.343 38.343 3.6797 0 0 0 0.40738 1 5396 5396 0.79363 0 1 23845 13205 14801 14810 28099 28099 0.052020714145328384 LLLLEQFR 8 Unmodified _LLLLEQFR_ 0 0 0 REV__ENST00000573186.5_3_17:7219444-7222432:-|nuORF REV__ENST00000573186.5_3_17:7219444-7222432:-|nuORF MSMS UPN48_class_I_Rep_2 6 516.3134155273438 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 94.043 1 97.82 97.32 98.32 3.7761 0 0 0 0.40738 1 22364 22364 0.79363 0 1 + 23846 21272 14802 14811 28100 28100 0.10343210236646883 LLLLFHFL 8 Unmodified _LLLLFHFL_ 0 0 0 L1ME3A_dup8852|chrX:44908943-44909358:-|1.7553767138302765|0.0069271462186877|7.99|151.0|19|3|sense L1ME3A_dup8852|chrX:44908943-44909358:-|1.7553767138302765|0.0069271462186877|7.99|151.0|19|3|sense L1ME3A_dup8852|chrX:44908943-44909358:-|1.7553767138302765|0.0069271462186877|7.99|151.0|19|3|sense MSMS UPN48_class_I_Rep_3 7 508.31878662109375 2 508.320589 1014.62662 NaN NaN NaN NaN NaN NaN NaN 69.05 1 72.559 72.059 73.059 3.5094 0 0 0 0.37152 1 15877 15877 17.087 0 1 23847 12688 14803 14812 28101 28101 0.11989603592974163 LLLLFVIYN 9 Unmodified _LLLLFVIYN_ 0 0 0 REV__L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|27|1|anti-sense REV__L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.3445434570312 2 554.344261 1106.67397 0.45182 0.00025046 -0.15595 -8.6448E-05 0.29587 0.00016401 554.3437213474723 73.43 0.2479 76.666 76.522 76.77 3.2363 26 21 2 0 0 0 0.26948 1 18131 18131 15.847 0 1 70581 + 23848 26923 14804 14813 28102 28102 0.12489838073315696 LLLLGDQA 8 Unmodified _LLLLGDQA_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|130|2|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|130|2|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|130|2|sense MSMS UPN47_class_I_Rep_2 3 421.7511291503906 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 79.905 1 83.274 82.774 83.774 3.3694 0 0 0 0.40738 1 19905 19905 0.79363 0 1 23849 8193 14805 14814 28103 28103 0.06383284011519663 LLLLHYGL 8 Unmodified _LLLLHYGL_ 0 0 0 L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|200|1|anti-sense L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|200|1|anti-sense L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|200|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.29522705078125 2 471.294571 940.574589 NaN NaN NaN NaN NaN NaN NaN 47.739 1 51.261 50.761 51.761 3.5219 0 0 0 0.40738 1 9466 9466 0.79363 0 1 23850 14123 14806 14815 28104 28104 0.10192440179241657 LLLLKIFFLLL 11 Unmodified _LLLLKIFFLLL_ 0 0 0 L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|112|1|anti-sense L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|112|1|anti-sense L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_1 2 449.32708740234375 3 449.312232 1344.91487 NaN NaN NaN NaN NaN NaN NaN 108.42 1 112.05 111.55 112.55 3.6355 0 0 0 0.38417 1 26637 26637 0.094841 0 1 23851 15246 14807 14816 28105 28105 0.25620654060571724 LLLLKKLT 8 Unmodified _LLLLKKLT_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MSMS UPN48_class_I_Rep_2 6 471.34002685546875 2 471.341521 940.668489 0.21017 9.9063E-05 -1.2739 -0.00060043 -1.0637 -0.00050137 471.34000136412254 108.01 0.11688 111.68 111.59 111.71 3.6746 22 10 3 0 0 0 0.82752 1 25564 25564 0.79363 0 1 5528300 + 23852 17766 14808 14817 28106 28106 0.19578159281491025 LLLLKKLT 8 Unmodified _LLLLKKLT_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MATCH UPN47_class_I_Rep_1 2 2 471.341521 940.668489 0.22631 0.00010667 -3.9285 -0.0018516 -3.7021 -0.001745 471.339602433932 107.97 0.070038 111.61 111.56 111.63 3.6355 -0.012884 -0.00064939 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 830440 + 23853 17766 14808 14817 0.19578159281491025 LLLLKKLT 8 Unmodified _LLLLKKLT_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 471.341521 940.668489 0.26667 0.00012569 -3.5039 -0.0016515 -3.2373 -0.0015259 471.33983029830756 108.04 0.15303 111.57 111.45 111.6 3.5333 -0.046473 -0.00024919 NaN 0.79363 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2988500 + 23854 17766 14808 14817 0.19578159281491025 LLLLKKLT 8 Unmodified _LLLLKKLT_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 471.341521 940.668489 0.20529 9.6763E-05 -2.7986 -0.0013191 -2.5933 -0.0012223 471.3401092651001 107.93 0.06015 111.62 111.6 111.66 3.6813 -0.003535 0.00041567 NaN 0.79363 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3512200 + 23855 17766 14808 14817 0.19578159281491025 LLLLKNLL 8 Unmodified _LLLLKNLL_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MSMS UPN47_class_I_Rep_2 3 470.33221435546875 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.898 1 98.37 97.87 98.87 3.472 0 0 0 0.4032 1 23374 23374 6.3541 0 1 23856 807 14809 14818 28107 28107 0.18105872764454034 LLLLKNLL 8 Unmodified _LLLLKNLL_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MSMS UPN47_class_I_Rep_3 4 470.3311462402344 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.061 1 98.47 97.97 98.97 3.4095 0 0 0 0.4032 1 23639 23639 6.3541 0 1 23857 807 14809 14818 28108 28108 0.18105872764454034 LLLLKNLL 8 Unmodified _LLLLKNLL_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MSMS UPN48_class_I_Rep_3 7 470.3319091796875 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.193 1 98.085 97.585 98.585 3.8914 0 0 0 0.39167 1 22324 22324 11.114 0 1 23858 807 14809 14818 28109 28109 0.18105872764454034 LLLLKNLL 8 Unmodified _LLLLKNLL_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MSMS UPN48_class_I_Rep_3 7 470.33209228515625 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.372 1 98.274 97.774 98.774 3.9016 0 0 0 0.39167 1 22365 22365 11.114 0 1 23859 807 14809 14818 28110 28110 0.18105872764454034 LLLLKVQI 8 Unmodified _LLLLKVQI_ 0 0 0 REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|92|2|anti-sense REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|92|2|anti-sense MSMS UPN48_class_I_Rep_3 7 470.3321533203125 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.094 1 98.996 98.496 99.496 3.9016 0 0 0 0.40738 1 22539 22539 0.79363 0 1 + 23860 25552 14810 14819 28111 28111 0.18105872764454034 LLLLLDYML 9 Unmodified _LLLLLDYML_ 0 0 0 MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.8298950195312 2 553.830129 1105.6457 0.51635 0.00028597 -0.22853 -0.00012657 0.28783 0.00015941 553.8298370370064 81.905 0.34389 85.48 85.407 85.751 3.5753 77 42 2 0 0 0 0.48414 1 19583 19583 2.3027 0 1 169340 23861 15972 14811 14820 28112 28112 0.09710772101720977 LLLLLDYML 9 Unmodified _LLLLLDYML_ 0 0 0 MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 553.8299560546875 2 553.830129 1105.6457 0.49082 0.00027183 -0.27316 -0.00015128 0.21766 0.00012055 553.8298489444317 82.173 0.46844 85.842 85.675 86.144 3.669 88 59 2 0 0 0 0.48414 1 19487 19487 2.3027 0 1 160770 23862 15972 14811 14820 28113 28113 0.09710772101720977 LLLLLDYML 9 Unmodified _LLLLLDYML_ 0 0 0 MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 553.830129 1105.6457 0.41262 0.00022852 -0.46998 -0.00026029 -0.057362 -3.1769E-05 553.8298484866722 85.492 0.16217 85.492 85.444 85.606 0 -0.1127 -0.00012812 NaN 2.3027 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 412910 23863 15972 14811 14820 0.09710772101720977 LLLLLDYML 9 Unmodified _LLLLLDYML_ 0 0 0 MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MER41B_dup1964|chr12:76508452-76509088:+|1.010147406057331|0.0067818818368475|7.22|150.0|37|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 553.830129 1105.6457 0.51635 0.00028597 -0.22853 -0.00012657 0.28783 0.00015941 553.8298370370064 81.905 0.34389 85.48 85.407 85.751 3.5753 -0.12447 0.00013933 NaN 2.3027 77 42 2 NaN NaN NaN NaN 0 NaN NaN 0 169340 23864 15972 14811 14820 0.09710772101720977 LLLLLFGFRWH 11 Unmodified _LLLLLFGFRWH_ 0 0 0 L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|247|2|anti-sense L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|247|2|anti-sense L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|247|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 471.79583740234375 3 472.283447 1413.82851 0.058451 2.7605E-05 -0.011335 -5.3533E-06 0.047116 2.2252E-05 472.28323326640236 93.18 0.12563 96.585 96.496 96.622 3.4052 29 17 3 0 0 0 22.551 1 23237 23237 0.50596 0 1 64258 23865 9499 14812 14821 28114 28114 0.13815087278544524 LLLLLKKT 8 Unmodified _LLLLLKKT_ 0 0 0 REV__ENST00000389131.7_1_8:23225784-23261606:-|nuORF REV__ENST00000389131.7_1_8:23225784-23261606:-|nuORF MSMS UPN46_class_I_Rep_3 1 471.3428955078125 2 471.341521 940.668489 NaN NaN NaN NaN NaN NaN NaN 79.727 1 79.727 79.227 80.227 0 0 0 0 0.40738 1 18743 18743 0.79363 0 1 + 23866 22077 14813 14822 28115 28115 0.19578159281513763 LLLLLKLILL 10 Unmodified _LLLLLKLILL_ 0 0 0 REV__L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense REV__L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.9393920898438 2 582.938328 1163.8621 NaN NaN NaN NaN NaN NaN NaN 38.07 1 41.735 41.235 42.235 3.6652 0 0 0 0.53105 1 7296 7296 0 0 1 + 23867 26326 14814 14823 28116 28116 0.28672695997761366 LLLLLKLILL 10 Unmodified _LLLLLKLILL_ 0 0 0 REV__L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense REV__L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.9384155273438 2 582.938328 1163.8621 NaN NaN NaN NaN NaN NaN NaN 38.445 1 41.833 41.333 42.333 3.3879 0 0 0 0.53105 1 7444 7444 0 0 1 + 23868 26326 14814 14823 28117 28117 0.28672695997761366 LLLLLKLILL 10 Unmodified _LLLLLKLILL_ 0 0 0 REV__L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense REV__L1MB7_dup9572|chr8:22654336-22655770:-|1.870100919996148|0.0899658674875399|4.38|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.6060180664062 2 582.938328 1163.8621 NaN NaN NaN NaN NaN NaN NaN 38.553 1 41.794 41.294 42.294 3.2414 0 0 0 0.53105 1 7519 7519 0 0 1 + 23869 26326 14814 14823 28118 28118 0.28672695997761366 LLLLLKTK 8 Unmodified _LLLLLKTK_ 0 0 0 Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|53|2|anti-sense;Tigger3b_dup2109|chr5:69959607-69960467:+|1.6761676302629709|0.0451704487152207|5.21|150.0|43|1|anti-sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|53|2|anti-sense Tigger3b_dup2110|chr5:70157701-70158562:-|3.055943654336276|0.1262628899240672|4.6|151.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.3400573730469 2 471.341521 940.668489 0.2052 9.6717E-05 -2.1521 -0.0010144 -1.9469 -0.00091766 471.3404422036081 108.4 0.17348 112.07 112.05 112.23 3.6751 21 15 2 0 0 0 0.82752 1 25672 25672 2.3027 0 1 12876000 23870 33372 14815 14824 28119 28119 0.19578159281502394 LLLLLLLLK 9 Unmodified _LLLLLLLLK_ 0 0 0 L1M4c_dup2549|chr11:73029247-73030074:+|1.492541106498173|0.0111034504480689|7.07|151.0|41|2|anti-sense REV__nc|ENSG00000115155|Q9HC10-3|OTOF REV__nc|ENSG00000115155|Q9HC10-3|OTOF MSMS UPN48_class_I_Rep_2 6 525.9688720703125 2 526.396296 1050.77804 NaN NaN NaN NaN NaN NaN NaN 47.133 1 50.883 50.383 51.383 3.7494 0 0 0 0.4029 1 9286 9286 0 0 1 + 23871 18543 14816 14825 28120 28120 0.25468164900826196 LLLLLLLLLH 10 Unmodified _LLLLLLLLLH_ 0 0 0 ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron ENSG00000198223.17,CSF2RA,chrX,+,I2.1,1274843,1281870|24|14.73|1|intron MSMS UPN48_class_I_Rep_2 6 587.7059326171875 2 587.420303 1172.82605 NaN NaN NaN NaN NaN NaN NaN 83.137 1 86.818 86.318 87.318 3.6814 0 0 0 0.53105 1 19751 19751 0 0 1 23872 5421 14817 14826 28121 28121 0.24655238820901104 LLLLLLLLLVR 11 Unmodified _LLLLLLLLLVR_ 0 0 0 REV__ENSG00000161921|ENST00000293778|CXCL16 REV__ENSG00000161921|ENST00000293778|CXCL16 MSMS UPN47_class_I_Rep_3 4 646.4738159179688 2 646.475609 1290.93667 NaN NaN NaN NaN NaN NaN NaN 110.05 1 113.58 113.08 114.08 3.5347 0 0 0 0.38417 1 27029 27029 0 0 1 + 23873 19914 14818 14827 28122 28122 0.3028345880911729 LLLLLLRRR 9 Unmodified _LLLLLLRRR_ 0 0 0 REV__ENSG00000164715|ENST00000297293|LMTK2 REV__ENSG00000164715|ENST00000297293|LMTK2 MSMS UPN47_class_I_Rep_1 2 583.4160766601562 2 583.416417 1164.81828 NaN NaN NaN NaN NaN NaN NaN 102.15 1 105.94 105.44 106.44 3.7888 0 0 0 0.40038 1 25157 25157 0.6015 0 1 + 23874 20078 14819 14828 28123 28123 0.24246524343971032 LLLLLLTLLTL 11 Unmodified _LLLLLLTLLTL_ 0 0 0 REV__ENSG00000149131|ENST00000278407|SERPING1 REV__ENSG00000149131|ENST00000278407|SERPING1 MSMS UPN46_class_I_Rep_3 1 619.9378662109375 2 619.938525 1237.8625 NaN NaN NaN NaN NaN NaN NaN 53.357 1 53.357 52.857 53.857 0 0 0 0 0.38417 1 11476 11476 0 0 1 + 23875 19606 14820 14829 28124 28124 0.25308070926939763 LLLLLLVLLLL 11 Unmodified _LLLLLLVLLLL_ 0 0 0 L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|325|3|anti-sense L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|325|3|anti-sense L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|325|3|anti-sense MSMS UPN46_class_I_Rep_3 1 624.9642944335938 2 624.967086 1247.91962 NaN NaN NaN NaN NaN NaN NaN 90.824 1 90.824 90.324 91.324 0 0 0 0 0.38417 1 21910 21910 0 0 1 23876 14641 14821 14830 28125 28125 0.30557538203311196 LLLLLLVLLVL 11 Unmodified _LLLLLLVLLVL_ 0 0 0 L1MB7_dup15860|chr12:66341974-66342367:-|1.1557033653713158|0.1499092139375435|2.95|151.0|17|1|anti-sense L1MB7_dup15860|chr12:66341974-66342367:-|1.1557033653713158|0.1499092139375435|2.95|151.0|17|1|anti-sense L1MB7_dup15860|chr12:66341974-66342367:-|1.1557033653713158|0.1499092139375435|2.95|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_2 3 618.2918701171875 2 617.959261 1233.90397 NaN NaN NaN NaN NaN NaN NaN 50.979 1 54.318 53.818 54.818 3.3386 0 0 0 0.38417 1 11253 11253 0 0 1 23877 10726 14822 14831 28126 28126 0.2963725168626752 LLLLLLVLLVL 11 Unmodified _LLLLLLVLLVL_ 0 0 0 L1MB7_dup15860|chr12:66341974-66342367:-|1.1557033653713158|0.1499092139375435|2.95|151.0|17|1|anti-sense L1MB7_dup15860|chr12:66341974-66342367:-|1.1557033653713158|0.1499092139375435|2.95|151.0|17|1|anti-sense L1MB7_dup15860|chr12:66341974-66342367:-|1.1557033653713158|0.1499092139375435|2.95|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 617.957763671875 2 617.959261 1233.90397 NaN NaN NaN NaN NaN NaN NaN 51.312 1 54.528 54.028 55.028 3.2163 0 0 0 0.38417 1 11409 11409 0 0 1 23878 10726 14822 14831 28127 28127 0.2963725168626752 LLLLLMKWH 9 Unmodified _LLLLLMKWH_ 0 0 0 REV__ENSG00000189320|ENST00000338588|FAM180A REV__ENSG00000189320|ENST00000338588|FAM180A MULTI-MSMS UPN48_class_I_Rep_1 5 583.8583374023438 2 583.859555 1165.70456 0.41268 0.00024095 -1.1048 -0.00064508 -0.69217 -0.00040413 583.8586670017747 89.514 0.45852 93.14 92.916 93.375 3.6255 65 48 2 0 0 0 0.50015 1 21497 21497 0.6015 0.14316 1 166110 + 23879 21008 14823 14832 28128 28128 0.1283329318671349 LLLLLMKWH 9 Unmodified _LLLLLMKWH_ 0 0 0 REV__ENSG00000189320|ENST00000338588|FAM180A REV__ENSG00000189320|ENST00000338588|FAM180A MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 583.859555 1165.70456 0.48078 0.00028071 -1.2433 -0.0007259 -0.7625 -0.00044519 583.8587378408419 89.477 0.49956 93.215 92.973 93.473 3.7379 0.021034 0.00011788 NaN 0.6015 87 53 2 NaN NaN NaN NaN 0 NaN NaN 0 139330 + 23880 21008 14823 14832 0.1283329318671349 LLLLLPMFH 9 Unmodified _LLLLLPMFH_ 0 0 0 REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C MULTI-MSMS UPN46_class_I_Rep_3 1 548.834716796875 2 548.833006 1095.65146 -0.060743 -3.3338E-05 2.7495 0.001509 2.6887 0.0014757 548.8344964160449 21.217 0.051184 21.217 21.18 21.231 0 5 4 2 0 0 0 0.50015 1 2339 2339 0.6015 0.076735 1 44182 + 23881 19447 14824 14833 28129 28129 0.10745915404072548 LLLLLPWPM 9 Unmodified _LLLLLPWPM_ 0 0 0 REV__ENSG00000182704|ENST00000333090|TSKU REV__ENSG00000182704|ENST00000333090|TSKU MSMS UPN48_class_I_Rep_1 5 548.3340454101562 2 548.335381 1094.65621 NaN NaN NaN NaN NaN NaN NaN 82.203 1 85.779 85.279 86.279 3.5753 0 0 0 0.40038 1 19625 19625 0.6015 0 1 + 23882 20762 14825 14834 28130 28130 0.11266799546820039 LLLLNNTSPLP 11 Unmodified _LLLLNNTSPLP_ 0 0 0 L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|70|3|anti-sense L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|70|3|anti-sense L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|70|3|anti-sense MSMS UPN48_class_I_Rep_2 6 597.8564453125 2 597.858264 1193.70197 NaN NaN NaN NaN NaN NaN NaN 84.603 1 88.296 87.796 88.796 3.6937 0 0 0 0.38417 1 20132 20132 2.7352 0 1 23883 10343 14826 14835 28131 28131 0.11287116262769814 LLLLPCKMPI 10 Unmodified _LLLLPCKMPI_ 0 0 0 MSTA_dup1834|chr2:86560720-86561068:-|1.0820228552531814|0.0448645672892338|4.59|151.0|3|1|sense MSTA_dup1834|chr2:86560720-86561068:-|1.0820228552531814|0.0448645672892338|4.59|151.0|3|1|sense MSTA_dup1834|chr2:86560720-86561068:-|1.0820228552531814|0.0448645672892338|4.59|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 570.847900390625 2 570.847799 1139.68104 NaN NaN NaN NaN NaN NaN NaN 29.774 1 29.774 29.274 30.274 0 0 0 0 0.53105 1 4761 4761 0 0 1 23884 16530 14827 14836 28132 28132 0.11679111357898364 LLLLPFMP 8 Unmodified _LLLLPFMP_ 0 0 0 MLT1F2_dup4323|chr12:100329616-100330156:-|1.1364658865738857|0.2470918072654727|2.2|151.0|14|3|sense MLT1F2_dup4323|chr12:100329616-100330156:-|1.1364658865738857|0.2470918072654727|2.2|151.0|14|3|sense MLT1F2_dup4323|chr12:100329616-100330156:-|1.1364658865738857|0.2470918072654727|2.2|151.0|14|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 471.7957763671875 2 472.2879 942.561247 0.044715 2.1118E-05 0.0082099 3.8775E-06 0.052925 2.4996E-05 472.2877261454627 87.428 0.11932 90.816 90.765 90.884 3.3873 27 14 3 0 0 0 0.72333 1 21897 21897 0.79363 0 1 172350 23885 16398 14828 14837 28133 28133 0.0876686607564352 LLLLPGMW 8 Unmodified _LLLLPGMW_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MSMS UPN48_class_I_Rep_1 5 471.7780456542969 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 82.733 1 86.32 85.82 86.82 3.5871 0 0 0 0.40738 1 19763 19763 0.79363 0 1 23886 2081 14829 14838 28134 28134 0.067736954158363 LLLLPGMW 8 Unmodified _LLLLPGMW_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MSMS UPN48_class_I_Rep_2 6 471.77740478515625 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 82.506 1 86.175 85.675 86.675 3.669 0 0 0 0.40738 1 19600 19600 0.79363 0 1 23887 2081 14829 14838 28135 28135 0.067736954158363 LLLLPLKKKV 10 Unmodified _LLLLPLKKKV_ 0 0 0 Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|32|3|sense Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|32|3|sense Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 582.92529296875 2 582.925752 1163.83695 NaN NaN NaN NaN NaN NaN NaN 93.075 1 96.796 96.296 97.296 3.7209 0 0 0 0.53105 1 23167 23167 0.45834 0 1 23888 33395 14830 14839 28136 28136 0.2615864119516118 LLLLPLKKKV 10 Unmodified _LLLLPLKKKV_ 0 0 0 Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|32|3|sense Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|32|3|sense Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 582.92431640625 2 582.925752 1163.83695 NaN NaN NaN NaN NaN NaN NaN 92.575 1 96.338 95.838 96.838 3.7629 0 0 0 0.53105 1 22027 22027 3.9444 0 1 23889 33395 14830 14839 28137 28137 0.2615864119516118 LLLLPQED 8 Unmodified _LLLLPQED_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|18|1|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|18|1|sense MSMS UPN47_class_I_Rep_1 2 470.77099609375 2 470.771126 939.527698 NaN NaN NaN NaN NaN NaN NaN 43.422 1 47.109 46.609 47.609 3.6875 0 0 0 0.40738 1 8927 8927 0.79363 0 1 + 23890 25366 14831 14840 28138 28138 0.0555153583743504 LLLLPQED 8 Unmodified _LLLLPQED_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|18|1|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|18|1|sense MSMS UPN48_class_I_Rep_3 7 470.7723693847656 2 470.771126 939.527698 NaN NaN NaN NaN NaN NaN NaN 81.809 1 85.494 84.994 85.994 3.685 0 0 0 0.40738 1 19379 19379 0.79363 0 1 + 23891 25366 14831 14840 28139 28139 0.0555153583743504 LLLLPYPL 8 Unmodified _LLLLPYPL_ 0 0 0 ENST00000466696.1_1_3:87302513-87302969:+|nuORF ENST00000466696.1_1_3:87302513-87302969:+|nuORF ENST00000466696.1_1_3:87302513-87302969:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.3061218261719 2 471.307147 940.599741 NaN NaN NaN NaN NaN NaN NaN 73.338 1 76.724 76.224 77.224 3.3861 0 0 0 0.40738 1 18002 18002 0.79363 0 1 23892 6903 14832 14841 28140 28140 0.12706494981796368 LLLLPYSAAR 10 Unmodified _LLLLPYSAAR_ 0 0 0 REV__ENST00000535420.5_1_1:154989902-154990361:+|nuORF REV__ENST00000535420.5_1_1:154989902-154990361:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 558.8421020507812 2 558.842416 1115.67028 0.45943 0.00025675 -0.2953 -0.00016503 0.16413 9.1721E-05 558.8422049697416 46.505 0.95382 50.025 49.623 50.577 3.5192 106 62 2 0 0 0 0.55448 1 9013 9013 4.897 0.95262 1 246440 + 23893 22887 14833 14842 28141 28141 0.1170716829947196 LLLLQDPK 8 Unmodified _LLLLQDPK_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MSMS UPN48_class_I_Rep_1 5 470.7723693847656 2 470.29731 938.580068 NaN NaN NaN NaN NaN NaN NaN 76.796 1 80.306 79.806 80.806 3.5102 0 0 0 0.40738 1 18248 18248 0.79363 0 1 + 23894 20686 14834 14843 28142 28142 0.10832118971029558 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 471.7956848144531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 69.712 1 69.712 69.212 70.212 0 0 0 0 0.40738 1 15987 15987 0.79363 0 1 + 23895 31852 14835 14844 28143 28143 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 471.7962341308594 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 92.655 1 92.655 92.155 93.155 0 0 0 0 0.40738 1 22431 22431 0.79363 0 1 + 23896 31852 14835 14844 28144 28144 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 47.26 1 50.955 50.455 51.455 3.6951 0 0 0 0.40738 1 10103 10103 0.79363 0 1 + 23897 31852 14835 14844 28145 28145 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 47.801 1 51.483 50.983 51.983 3.6819 0 0 0 0.40738 1 10256 10256 0.79363 0 1 + 23898 31852 14835 14844 28146 28146 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7951354980469 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 47.962 1 51.644 51.144 52.144 3.6819 0 0 0 0.40738 1 10304 10304 0.79363 0 1 + 23899 31852 14835 14844 28147 28147 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7953796386719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 48.181 1 51.863 51.363 52.363 3.6819 0 0 0 0.40738 1 10371 10371 0.79363 0 1 + 23900 31852 14835 14844 28148 28148 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7958984375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 48.348 1 52.03 51.53 52.53 3.6819 0 0 0 0.40738 1 10422 10422 0.79363 0 1 + 23901 31852 14835 14844 28149 28149 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79571533203125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.531 1 53.19 52.69 53.69 3.6592 0 0 0 0.40581 1 10782 10782 2.8892 0 1 + 23902 31852 14835 14844 28150 28150 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.801 1 53.46 52.96 53.96 3.6592 0 0 0 0.4032 1 10865 10865 6.3541 0 1 + 23903 31852 14835 14844 28151 28151 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.948 1 53.576 53.076 54.076 3.6285 0 0 0 0.4032 1 10910 10910 6.3541 0 1 + 23904 31852 14835 14844 28152 28152 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7960510253906 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 50.084 1 53.713 53.213 54.213 3.6285 0 0 0 0.40581 1 10952 10952 2.8892 0 1 + 23905 31852 14835 14844 28153 28153 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 51.899 1 55.493 54.993 55.993 3.5932 0 0 0 0.40738 1 11508 11508 0.79363 0 1 + 23906 31852 14835 14844 28154 28154 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 52.217 1 55.775 55.275 56.275 3.5585 0 0 0 0.40738 1 11604 11604 0.79363 0 1 + 23907 31852 14835 14844 28155 28155 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.795654296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 52.623 1 56.181 55.681 56.681 3.5585 0 0 0 0.40738 1 11724 11724 0.79363 0 1 + 23908 31852 14835 14844 28156 28156 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7959899902344 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 52.784 1 56.342 55.842 56.842 3.5585 0 0 0 0.40738 1 11772 11772 0.79363 0 1 + 23909 31852 14835 14844 28157 28157 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 52.914 1 56.472 55.972 56.972 3.5585 0 0 0 0.40738 1 11811 11811 0.79363 0 1 + 23910 31852 14835 14844 28158 28158 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79583740234375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 53.211 1 56.739 56.239 57.239 3.5278 0 0 0 0.40738 1 11903 11903 0.79363 0 1 + 23911 31852 14835 14844 28159 28159 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 53.379 1 56.907 56.407 57.407 3.5278 0 0 0 0.40738 1 11955 11955 0.79363 0 1 + 23912 31852 14835 14844 28160 28160 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 56.11 1 59.588 59.088 60.088 3.4785 0 0 0 0.40738 1 12790 12790 0.79363 0 1 + 23913 31852 14835 14844 28161 28161 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79608154296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 59.131 1 62.548 62.048 63.048 3.4171 0 0 0 0.40738 1 13707 13707 0.79363 0 1 + 23914 31852 14835 14844 28162 28162 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7960205078125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 59.267 1 62.684 62.184 63.184 3.4171 0 0 0 0.40625 1 13749 13749 2.3027 0 1 + 23915 31852 14835 14844 28163 28163 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7950134277344 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 60.985 1 64.366 63.866 64.866 3.3815 0 0 0 0.40738 1 14268 14268 0.79363 0 1 + 23916 31852 14835 14844 28164 28164 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.12 1 66.479 65.979 66.979 3.3595 0 0 0 0.40738 1 14916 14916 0.79363 0 1 + 23917 31852 14835 14844 28165 28165 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.311 1 66.671 66.171 67.171 3.3595 0 0 0 0.40738 1 14972 14972 0.79363 0 1 + 23918 31852 14835 14844 28166 28166 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7954406738281 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.454 1 66.814 66.314 67.314 3.3595 0 0 0 0.40738 1 15014 15014 0.79363 0 1 + 23919 31852 14835 14844 28167 28167 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7957763671875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.819 1 67.175 66.675 67.675 3.3557 0 0 0 0.40738 1 15125 15125 0.79363 0 1 + 23920 31852 14835 14844 28168 28168 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 71.921 1 75.296 74.796 75.796 3.3751 0 0 0 0.40738 1 17565 17565 0.79363 0 1 + 23921 31852 14835 14844 28169 28169 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7958679199219 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 72.318 1 75.698 75.198 76.198 3.3799 0 0 0 0.40738 1 17688 17688 0.79363 0 1 + 23922 31852 14835 14844 28170 28170 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7959899902344 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 72.783 1 76.163 75.663 76.663 3.3799 0 0 0 0.40581 1 17831 17831 2.8892 0 1 + 23923 31852 14835 14844 28171 28171 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.795166015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 72.857 1 76.237 75.737 76.737 3.3799 0 0 0 0.40738 1 17854 17854 0.79363 0 1 + 23924 31852 14835 14844 28172 28172 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7960205078125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 78.432 1 81.878 81.378 82.378 3.4456 0 0 0 0.40738 1 19500 19500 0.79363 0 1 + 23925 31852 14835 14844 28173 28173 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 80.73 1 84.217 83.717 84.717 3.4874 0 0 0 0.40738 1 20119 20119 0.79363 0 1 + 23926 31852 14835 14844 28174 28174 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7956848144531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 81.828 1 85.34 84.84 85.84 3.5122 0 0 0 0.40738 1 20432 20432 0.79363 0 1 + 23927 31852 14835 14844 28175 28175 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7962341308594 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 89.614 1 93.288 92.788 93.788 3.6738 0 0 0 0.40738 1 22408 22408 0.79363 0 1 + 23928 31852 14835 14844 28176 28176 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 95.686 1 99.45 98.95 99.95 3.7648 0 0 0 0.40581 1 23750 23750 2.8892 0 1 + 23929 31852 14835 14844 28177 28177 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7963562011719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 35.978 1 39.389 38.889 39.889 3.4114 0 0 0 0.40581 1 6696 6696 2.8892 0 1 + 23930 31852 14835 14844 28178 28178 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7953796386719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 40.721 1 44.092 43.592 44.592 3.3712 0 0 0 0.40581 1 8137 8137 2.8892 0 1 + 23931 31852 14835 14844 28179 28179 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7952880859375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 41.494 1 44.859 44.359 45.359 3.3655 0 0 0 0.40738 1 8369 8369 0.79363 0 1 + 23932 31852 14835 14844 28180 28180 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 43.417 1 46.775 46.275 47.275 3.358 0 0 0 0.40738 1 8954 8954 0.79363 0 1 + 23933 31852 14835 14844 28181 28181 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7959289550781 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 48.649 1 51.996 51.496 52.496 3.3465 0 0 0 0.40738 1 10535 10535 0.79363 0 1 + 23934 31852 14835 14844 28182 28182 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.795654296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.077 1 52.424 51.924 52.924 3.3465 0 0 0 0.40738 1 10668 10668 0.79363 0 1 + 23935 31852 14835 14844 28183 28183 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7957458496094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 53.055 1 56.381 55.881 56.881 3.3266 0 0 0 0.40738 1 11882 11882 0.79363 0 1 + 23936 31852 14835 14844 28184 28184 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 53.194 1 56.521 56.021 57.021 3.3266 0 0 0 0.40738 1 11925 11925 0.79363 0 1 + 23937 31852 14835 14844 28185 28185 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 60.02 1 63.293 62.793 63.793 3.2731 0 0 0 0.40625 1 14014 14014 2.3027 0 1 + 23938 31852 14835 14844 28186 28186 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 61.261 1 64.526 64.026 65.026 3.2654 0 0 0 0.40581 1 14388 14388 2.8892 0 1 + 23939 31852 14835 14844 28187 28187 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7954406738281 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 62.914 1 66.17 65.67 66.67 3.2558 0 0 0 0.40738 1 14891 14891 0.79363 0 1 + 23940 31852 14835 14844 28188 28188 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7957458496094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.485 1 66.741 66.241 67.241 3.2558 0 0 0 0.40738 1 15065 15065 0.79363 0 1 + 23941 31852 14835 14844 28189 28189 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 64.279 1 67.535 67.035 68.035 3.2556 0 0 0 0.40738 1 15303 15303 0.79363 0 1 + 23942 31852 14835 14844 28190 28190 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 64.414 1 67.67 67.17 68.17 3.2556 0 0 0 0.40738 1 15344 15344 0.79363 0 1 + 23943 31852 14835 14844 28191 28191 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 66.922 1 70.185 69.685 70.685 3.2636 0 0 0 0.40738 1 16108 16108 0.79363 0 1 + 23944 31852 14835 14844 28192 28192 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 67.543 1 70.807 70.307 71.307 3.2636 0 0 0 0.40738 1 16297 16297 0.79363 0 1 + 23945 31852 14835 14844 28193 28193 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7962341308594 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 75.365 1 78.678 78.178 79.178 3.3127 0 0 0 0.40738 1 18606 18606 0.79363 0 1 + 23946 31852 14835 14844 28194 28194 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7957458496094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 75.928 1 79.25 78.75 79.75 3.3216 0 0 0 0.40738 1 18772 18772 0.79363 0 1 + 23947 31852 14835 14844 28195 28195 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79583740234375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.236 1 79.557 79.057 80.057 3.3216 0 0 0 0.40738 1 18864 18864 0.79363 0 1 + 23948 31852 14835 14844 28196 28196 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79644775390625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.423 1 79.745 79.245 80.245 3.3216 0 0 0 0.40738 1 18916 18916 0.79363 0 1 + 23949 31852 14835 14844 28197 28197 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.547 1 79.869 79.369 80.369 3.3216 0 0 0 0.40738 1 18952 18952 0.79363 0 1 + 23950 31852 14835 14844 28198 28198 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.796142578125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 88.836 1 92.288 91.788 92.788 3.4525 0 0 0 0.40581 1 22081 22081 2.8892 0 1 + 23951 31852 14835 14844 28199 28199 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.79559326171875 2 471.797143 941.579734 0.051057 2.4089E-05 -1.0169 -0.00047976 -0.96582 -0.00045567 471.7956599741969 50.297 0.59335 53.523 53.317 53.91 3.2262 62 32 3 0 0 0 0.82752 1 11131 11131 6.3541 0 1 275060 + 23952 31852 14835 14844 28200 28200 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 30.087 1 33.398 32.898 33.898 3.3116 0 0 0 0.40753 1 4947 4947 0.6015 0 1 + 23953 31852 14835 14844 28201 28201 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 36.016 1 39.27 38.77 39.77 3.2547 0 0 0 0.40738 1 6741 6741 0.79363 0 1 + 23954 31852 14835 14844 28202 28202 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 41.833 1 45.07 44.57 45.57 3.2372 0 0 0 0.40738 1 8523 8523 0.79363 0 1 + 23955 31852 14835 14844 28203 28203 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956848144531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 43.317 1 46.559 46.059 47.059 3.2419 0 0 0 0.40738 1 8977 8977 0.79363 0 1 + 23956 31852 14835 14844 28204 28204 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79541015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 48.178 1 51.419 50.919 51.919 3.2405 0 0 0 0.40738 1 10451 10451 0.79363 0 1 + 23957 31852 14835 14844 28205 28205 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79620361328125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 56.576 1 59.748 59.248 60.248 3.1721 0 0 0 0.40738 1 13015 13015 0.79363 0 1 + 23958 31852 14835 14844 28206 28206 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79522705078125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 56.822 1 59.995 59.495 60.495 3.1721 0 0 0 0.40738 1 13091 13091 0.79363 0 1 + 23959 31852 14835 14844 28207 28207 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 57.461 1 60.63 60.13 61.13 3.1681 0 0 0 0.40738 1 13281 13281 0.79363 0 1 + 23960 31852 14835 14844 28208 28208 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7951965332031 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 57.582 1 60.75 60.25 61.25 3.1681 0 0 0 0.40581 1 13316 13316 2.8892 0 1 + 23961 31852 14835 14844 28209 28209 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 57.708 1 60.876 60.376 61.376 3.1681 0 0 0 0.40581 1 13355 13355 2.8892 0 1 + 23962 31852 14835 14844 28210 28210 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 57.828 1 60.997 60.497 61.497 3.1681 0 0 0 0.40581 1 13392 13392 2.8892 0 1 + 23963 31852 14835 14844 28211 28211 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.795166015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 57.988 1 61.156 60.656 61.656 3.1681 0 0 0 0.40738 1 13440 13440 0.79363 0 1 + 23964 31852 14835 14844 28212 28212 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 58.259 1 61.425 60.925 61.925 3.1658 0 0 0 0.40738 1 13524 13524 0.79363 0 1 + 23965 31852 14835 14844 28213 28213 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79498291015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 59.377 1 62.542 62.042 63.042 3.1651 0 0 0 0.40738 1 13867 13867 0.79363 0 1 + 23966 31852 14835 14844 28214 28214 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79632568359375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 59.65 1 62.815 62.315 63.315 3.1651 0 0 0 0.40625 1 13951 13951 2.3027 0 1 + 23967 31852 14835 14844 28215 28215 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79571533203125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 60.305 1 63.47 62.97 63.97 3.1651 0 0 0 0.40738 1 14152 14152 0.79363 0 1 + 23968 31852 14835 14844 28216 28216 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7947082519531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 62.856 1 66.026 65.526 66.526 3.1698 0 0 0 0.40738 1 14932 14932 0.79363 0 1 + 23969 31852 14835 14844 28217 28217 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.172 1 66.342 65.842 66.842 3.1698 0 0 0 0.40581 1 15029 15029 2.8892 0 1 + 23970 31852 14835 14844 28218 28218 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.581 1 66.755 66.255 67.255 3.1741 0 0 0 0.40738 1 15149 15149 0.79363 0 1 + 23971 31852 14835 14844 28219 28219 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7954406738281 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.614 1 66.788 66.288 67.288 3.1741 0 0 0 0.40738 1 15159 15159 0.79363 0 1 + 23972 31852 14835 14844 28220 28220 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7958679199219 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.721 1 66.895 66.395 67.395 3.1741 0 0 0 0.40738 1 15191 15191 0.79363 0 1 + 23973 31852 14835 14844 28221 28221 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 64.402 1 67.576 67.076 68.076 3.1741 0 0 0 0.40738 1 15400 15400 0.79363 0 1 + 23974 31852 14835 14844 28222 28222 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 64.831 1 68.011 67.511 68.511 3.1795 0 0 0 0.40738 1 15531 15531 0.79363 0 1 + 23975 31852 14835 14844 28223 28223 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.795166015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 67.598 1 70.789 70.289 71.289 3.1914 0 0 0 0.40738 1 16376 16376 0.79363 0 1 + 23976 31852 14835 14844 28224 28224 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.796142578125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 67.826 1 71.017 70.517 71.517 3.1914 0 0 0 0.40581 1 16444 16444 2.8892 0 1 + 23977 31852 14835 14844 28225 28225 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 72.254 1 75.482 74.982 75.982 3.2271 0 0 0 0.40738 1 17776 17776 0.79363 0 1 + 23978 31852 14835 14844 28226 28226 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7958984375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 72.96 1 76.187 75.687 76.687 3.2271 0 0 0 0.40738 1 17990 17990 0.79363 0 1 + 23979 31852 14835 14844 28227 28227 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79571533203125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.205 1 79.463 78.963 79.963 3.2573 0 0 0 0.40738 1 18937 18937 0.79363 0 1 + 23980 31852 14835 14844 28228 28228 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79583740234375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.606 1 79.875 79.375 80.375 3.269 0 0 0 0.40581 1 19052 19052 2.8892 0 1 + 23981 31852 14835 14844 28229 28229 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 77.571 1 80.84 80.34 81.34 3.269 0 0 0 0.40738 1 19323 19323 0.79363 0 1 + 23982 31852 14835 14844 28230 28230 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 79.683 1 82.977 82.477 83.477 3.295 0 0 0 0.40738 1 19929 19929 0.79363 0 1 + 23983 31852 14835 14844 28231 28231 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7957458496094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 82.796 1 86.133 85.633 86.633 3.337 0 0 0 0.40738 1 20754 20754 0.79363 0 1 + 23984 31852 14835 14844 28232 28232 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.796630859375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 88.8 1 92.193 91.693 92.693 3.3931 0 0 0 0.40738 1 22271 22271 0.79363 0 1 + 23985 31852 14835 14844 28233 28233 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 89.553 1 92.946 92.446 93.446 3.3931 0 0 0 0.40738 1 22450 22450 0.79363 0 1 + 23986 31852 14835 14844 28234 28234 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 89.689 1 93.086 92.586 93.586 3.3976 0 0 0 0.40738 1 22486 22486 0.79363 0 1 + 23987 31852 14835 14844 28235 28235 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 93.764 1 97.169 96.669 97.669 3.4052 0 0 0 0.40738 1 23362 23362 0.79363 0 1 + 23988 31852 14835 14844 28236 28236 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7954406738281 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 94.089 1 97.496 96.996 97.996 3.4068 0 0 0 0.40738 1 23429 23429 0.79363 0 1 + 23989 31852 14835 14844 28237 28237 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956848144531 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 97.427 1 100.85 100.35 101.35 3.4216 0 0 0 0.40738 1 24151 24151 0.79363 0 1 + 23990 31852 14835 14844 28238 28238 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 60.376 1 63.85 63.35 64.35 3.4737 0 0 0 0.40738 1 13350 13350 0.79363 0 1 + 23991 31852 14835 14844 28239 28239 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7959289550781 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.053 1 66.515 66.015 67.015 3.4625 0 0 0 0.40738 1 14163 14163 0.79363 0 1 + 23992 31852 14835 14844 28240 28240 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.79571533203125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 64.113 1 67.571 67.071 68.071 3.4578 0 0 0 0.40738 1 14488 14488 0.79363 0 1 + 23993 31852 14835 14844 28241 28241 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.79541015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 64.297 1 67.755 67.255 68.255 3.4578 0 0 0 0.40738 1 14545 14545 0.79363 0 1 + 23994 31852 14835 14844 28242 28242 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7954406738281 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.454 1 66.928 66.428 67.428 3.4738 0 0 0 0.40738 1 14268 14268 0.79363 0 1 + 23995 31852 14835 14844 28243 28243 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.79608154296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 63.633 1 67.107 66.607 67.607 3.4743 0 0 0 0.40738 1 14323 14323 0.79363 0 1 + 23996 31852 14835 14844 28244 28244 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7952575683594 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 71.104 1 74.655 74.155 75.155 3.5505 0 0 0 0.40738 1 16568 16568 0.79363 0 1 + 23997 31852 14835 14844 28245 28245 0.106606992511729 LLLLQLTE 8 Unmodified _LLLLQLTE_ 0 0 0 REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense REV__MSTA_dup8396|chr7:66759483-66759875:-|1.2435756928285653|0.0265700176653902|5.55|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7958679199219 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 72.39 1 75.955 75.455 76.455 3.5645 0 0 0 0.40738 1 16939 16939 0.79363 0 1 + 23998 31852 14835 14844 28246 28246 0.106606992511729 LLLLRSRVLI 10 Unmodified _LLLLRSRVLI_ 0 0 0 REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000181789|ENST00000314797|COPG1 MSMS UPN48_class_I_Rep_3 7 598.4176025390625 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 65.644 1 69.152 68.652 69.652 3.5077 0 0 0 0.53105 1 14850 14850 0.45834 0 1 + 23999 20739 14836 14845 28247 28247 0.2279968490427109 LLLLRTPL 8 Unmodified _LLLLRTPL_ 0 0 0 ENST00000498524.5_1_3:15726730-15727661:-|nuORF ENST00000498524.5_1_3:15726730-15727661:-|nuORF ENST00000498524.5_1_3:15726730-15727661:-|nuORF MSMS UPN46_class_I_Rep_3 1 469.82318115234375 2 469.823495 937.632438 NaN NaN NaN NaN NaN NaN NaN 97.998 1 97.998 97.498 98.498 0 0 0 0 0.40581 1 23857 23857 2.8892 0 1 24000 7121 14837 14846 28248 28248 0.16112702104646814 LLLLSEALA 9 Unmodified _LLLLSEALA_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MSMS UPN47_class_I_Rep_1 2 471.7952575683594 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 70.18 1 73.551 73.051 74.051 3.3713 0 0 0 0.3264 1 17043 17043 9.3474 0.75416 1 24001 5530 14838 14847 28249 28249 0.106606992511729 LLLLSHRS 8 Unmodified _LLLLSHRS_ 0 0 0 L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|102|3|anti-sense L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|102|3|anti-sense L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|102|3|anti-sense MSMS UPN48_class_I_Rep_2 6 469.7709655761719 2 469.792727 937.5709 NaN NaN NaN NaN NaN NaN NaN 56.314 1 59.847 59.347 60.347 3.5333 0 0 0 0.40738 1 12083 12083 0.79363 0 1 24002 12122 14839 14848 28250 28250 0.09961770405368497 LLLLSIIVLHV 11 Unmodified _LLLLSIIVLHV_ 0 0 0 ENST00000580497.1_1_17:15162366-15164044:-|nuORF;ENST00000471150.2_1_17:15163807-15164044:-|nuORF;ENSG00000109099|ENST00000312280|PMP22 ENST00000580497.1_1_17:15162366-15164044:-|nuORF ENST00000580497.1_1_17:15162366-15164044:-|nuORF MSMS UPN46_class_I_Rep_3 1 616.9188842773438 2 616.920667 1231.82678 NaN NaN NaN NaN NaN NaN NaN 48.953 1 48.953 48.453 49.453 0 0 0 0 0.38417 1 10242 10242 0.35063 0 1 24003 1887 14840 14849 28251 28251 0.22014033469918104 LLLLSPSLS 9 Unmodified _LLLLSPSLS_ 0 0 0 REV__ENSG00000174721|ENST00000311575|FGFBP3 REV__ENSG00000174721|ENST00000311575|FGFBP3 MSMS UPN48_class_I_Rep_1 5 471.795654296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 47.2 1 50.722 50.222 51.222 3.5219 0 0 0 0.39428 1 9301 9301 2.0598 0 1 + 24004 20531 14841 14850 28252 28252 0.10660699251184269 LLLLSRRA 8 Unmodified _LLLLSRRA_ 0 0 0 REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|231|1|anti-sense REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|231|1|anti-sense MSMS UPN46_class_I_Rep_3 1 471.3158874511719 2 471.316369 940.618185 NaN NaN NaN NaN NaN NaN NaN 81.574 1 81.574 81.074 82.074 0 0 0 0 0.40738 1 19271 19271 0.79363 0 1 + 24005 23999 14842 14851 28253 28253 0.14550049676358867 LLLLSRRA 8 Unmodified _LLLLSRRA_ 0 0 0 REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|231|1|anti-sense REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|231|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.30633544921875 2 471.316369 940.618185 NaN NaN NaN NaN NaN NaN NaN 78.586 1 81.867 81.367 82.367 3.2816 0 0 0 0.40738 1 19603 19603 0.79363 0 1 + 24006 23999 14842 14851 28254 28254 0.14550049676358867 LLLLSRRA 8 Unmodified _LLLLSRRA_ 0 0 0 REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|231|1|anti-sense REV__L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|231|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.30657958984375 2 471.316369 940.618185 NaN NaN NaN NaN NaN NaN NaN 77.844 1 81.466 80.966 81.966 3.6222 0 0 0 0.40738 1 18448 18448 0.79363 0 1 + 24007 23999 14842 14851 28255 28255 0.14550049676358867 LLLLSVGDL 9 Unmodified _LLLLSVGDL_ 0 0 0 REV__AluSp_dup35040|chr13:40934417-40934719:-|1.4738648391266702|0.235376945372961|2.65|151.0|18|2|anti-sense REV__AluSp_dup35040|chr13:40934417-40934719:-|1.4738648391266702|0.235376945372961|2.65|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79571533203125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 60.096 1 63.494 62.994 63.994 3.3982 0 0 0 0.38299 1 14004 14004 4.756 0 1 + 24008 17111 14843 14852 28256 28256 0.10660699251184269 LLLLSYKG 8 Unmodified _LLLLSYKG_ 0 0 0 REV__L1M4_dup8021|chr7:99063984-99064722:-|1.1597846214309817|0.125775106099405|3.2|151.0|30|1|anti-sense REV__L1M4_dup8021|chr7:99063984-99064722:-|1.1597846214309817|0.125775106099405|3.2|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78387451171875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 17.685 1 21.072 20.572 21.572 3.387 0 0 0 0.40738 1 1366 1366 0.79363 0 1 + 24009 24449 14844 14853 28257 28257 0.10204733942327948 LLLLSYKG 8 Unmodified _LLLLSYKG_ 0 0 0 REV__L1M4_dup8021|chr7:99063984-99064722:-|1.1597846214309817|0.125775106099405|3.2|151.0|30|1|anti-sense REV__L1M4_dup8021|chr7:99063984-99064722:-|1.1597846214309817|0.125775106099405|3.2|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_1 5 453.7871398925781 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 78.614 1 82.149 81.649 82.649 3.5352 0 0 0 0.40738 1 18746 18746 0.79363 0 1 + 24010 24449 14844 14853 28258 28258 0.10204733942327948 LLLLTQEI 8 Unmodified _LLLLTQEI_ 0 0 0 REV__L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense REV__L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7958984375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 48.078 1 51.814 51.314 52.314 3.7361 0 0 0 0.40364 1 9567 9567 5.7604 0 1 + 24011 27657 14845 14854 28259 28259 0.10660699251184269 LLLLTQEI 8 Unmodified _LLLLTQEI_ 0 0 0 REV__L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense REV__L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|57|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.796875 2 471.797143 941.579734 0.26632 0.00012565 -0.4354 -0.00020542 -0.16908 -7.9772E-05 471.79679398705923 69.593 1.0343 73.106 72.694 73.728 3.5129 173 82 3 0 0 0 0.82752 1 16190 16190 2.3027 0 1 558900 + 24012 27657 14845 14854 28260 28260 0.10660699251184269 LLLLTTLR 8 Unmodified _LLLLTTLR_ 0 0 0 ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 471.3401184082031 2 471.820953 941.627353 0.27245 0.00012855 3.3325 0.0015723 3.6049 0.0017009 471.8217186267853 108.32 0.26086 111.86 111.61 111.88 3.5333 30 24 2 0 0 0 0.72333 1 26244 26244 2.5775 0 1 889110 24013 6575 14846 14855 28261 28261 0.15420398242042666 LLLLTTLR 8 Unmodified _LLLLTTLR_ 0 0 0 ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 471.820953 941.627353 0.21129 9.969E-05 3.5474 0.0016737 3.7586 0.0017734 471.82120685454004 107.91 0.035278 111.58 111.55 111.59 3.6746 -0.13655 0.00018916 NaN 2.5775 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 216510 24014 6575 14846 14855 0.15420398242042666 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_2 3 470.33209228515625 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 91.088 1 94.549 94.049 95.049 3.4613 0 0 0 0.40604 1 22567 22567 2.5775 0 1 24015 6877 14847 14856 28262 28262 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_2 3 470.3323669433594 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.21 1 97.682 97.182 98.182 3.472 0 0 0 0.39624 1 23226 23226 9.3474 0 1 24016 6877 14847 14856 28263 28263 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_2 3 470.3315734863281 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.385 1 98.86 98.36 99.36 3.4753 0 0 0 0.40738 1 23474 23474 0.79363 0 1 24017 6877 14847 14856 28264 28264 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_2 3 470.3322448730469 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 97.948 1 101.43 100.93 101.93 3.4836 0 0 0 0.40738 1 24025 24025 0.79363 0 1 24018 6877 14847 14856 28265 28265 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_3 4 470.3321838378906 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.562 1 98.971 98.471 99.471 3.4095 0 0 0 0.40738 1 23751 23751 0.79363 0 1 24019 6877 14847 14856 28266 28266 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_3 4 470.3324279785156 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 97.735 1 101.16 100.66 101.66 3.4216 0 0 0 0.40738 1 24217 24217 0.79363 0 1 24020 6877 14847 14856 28267 28267 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_3 4 470.33209228515625 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 97.884 1 101.31 100.81 101.81 3.4216 0 0 0 0.40738 1 24250 24250 0.79363 0 1 24021 6877 14847 14856 28268 28268 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN47_class_I_Rep_3 4 470.33197021484375 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 98.135 1 101.56 101.06 102.06 3.4216 0 0 0 0.40738 1 24306 24306 0.79363 0 1 24022 6877 14847 14856 28269 28269 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN48_class_I_Rep_2 6 470.33258056640625 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 90.948 1 94.703 94.203 95.203 3.7554 0 0 0 0.40604 1 21654 21654 2.5775 0 1 24023 6877 14847 14856 28270 28270 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN48_class_I_Rep_2 6 470.3317565917969 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.833 1 98.609 98.109 99.109 3.7761 0 0 0 0.40738 1 22545 22545 0.79363 0 1 24024 6877 14847 14856 28271 28271 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN48_class_I_Rep_2 6 470.33221435546875 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.171 1 98.951 98.451 99.451 3.7804 0 0 0 0.40738 1 22624 22624 0.79363 0 1 24025 6877 14847 14856 28272 28272 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN48_class_I_Rep_3 7 470.33209228515625 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 90.756 1 94.603 94.103 95.103 3.847 0 0 0 0.40364 1 21526 21526 5.7604 0 1 24026 6877 14847 14856 28273 28273 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN48_class_I_Rep_3 7 470.3321838378906 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 90.844 1 94.691 94.191 95.191 3.847 0 0 0 0.40604 1 21544 21544 2.5775 0 1 24027 6877 14847 14856 28274 28274 0.18105872764454034 LLLLVKIQ 8 Unmodified _LLLLVKIQ_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MSMS UPN48_class_I_Rep_3 7 470.5849609375 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 101.2 1 105.01 104.51 105.51 3.8153 0 0 0 0.40738 1 23942 23942 0.79363 0 1 24028 6877 14847 14856 28275 28275 0.18105872764454034 LLLLWLWLT 9 Unmodified _LLLLWLWLT_ 0 0 0 REV__L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|63|3|anti-sense REV__L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|63|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.8683471679688 2 585.867903 1169.72125 NaN NaN NaN NaN NaN NaN NaN 61.806 1 61.806 61.306 62.306 0 0 0 0 0.4007 1 13779 13779 0.52476 0 1 + 24029 27883 14848 14857 28276 28276 0.1431811734432813 LLLLYMYITS 10 Unmodified _LLLLYMYITS_ 0 0 0 nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP MULTI-SECPEP UPN47_class_I_Rep_2 3 410.2317810058594 3 410.566521 1228.67773 -0.41251 -0.00016936 -0.55395 -0.00022743 -0.96646 -0.0003968 410.5665270536945 103.8 0.083092 107.33 107.29 107.38 3.5289 15 12 2 0 0 0 0.84575 1 25235 25235 3.3196 2.622 1 17450000 24030 4072 14849 14858 28277 28277 0.0725413978486813 LLLLYMYITS 10 Unmodified _LLLLYMYITS_ 0 0 0 nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP MULTI-MATCH UPN47_class_I_Rep_3 4 3 410.566521 1228.67773 -0.6113 -0.00025098 0.29124 0.00011957 -0.32006 -0.00013141 410.56646278299036 103.55 0.019585 107.05 107.03 107.05 3.5057 -0.21339 0.001082 NaN 3.3196 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2058700 24031 4072 14849 14858 0.0725413978486813 LLLLYMYITS 10 Unmodified _LLLLYMYITS_ 0 0 0 nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP MULTI-MATCH UPN48_class_I_Rep_3 7 3 410.566521 1228.67773 0.096561 3.9645E-05 -0.86296 -0.0003543 -0.7664 -0.00031466 410.5660136501625 103.67 0.061783 107.41 107.4 107.46 3.7434 0.14777 -0.00033961 NaN 3.3196 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 11542000 24032 4072 14849 14858 0.0725413978486813 LLLLYPAC 8 Unmodified _LLLLYPAC_ 0 0 0 ENST00000389131.7_1_8:23225784-23261606:-|nuORF;ENST00000524168.1_1_8:23225784-23261561:-|nuORF ENST00000389131.7_1_8:23225784-23261606:-|nuORF ENST00000389131.7_1_8:23225784-23261606:-|nuORF MSMS UPN47_class_I_Rep_1 2 453.25030517578125 2 453.261882 904.509211 NaN NaN NaN NaN NaN NaN NaN 28.55 1 32.317 31.817 32.817 3.7662 0 0 0 0.40738 1 4414 4414 0.79363 0 1 24033 6509 14850 14859 28278 28278 0.05313702661874231 LLLMLSIVF 9 Unmodified _LLLMLSIVF_ 0 0 0 L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 524.8270263671875 2 524.827389 1047.64023 0.33118 0.00017381 -0.46092 -0.0002419 -0.12974 -6.8092E-05 524.8269341754386 94.637 0.28051 94.637 94.535 94.815 0 43 30 2 0 0 0 0.45688 1 22987 22987 4.756 0 1 154190 24034 8724 14851 14860 28279 28279 0.11831093309933749 LLLMLSIVF 9 Unmodified _LLLMLSIVF_ 0 0 0 L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 524.827389 1047.64023 0.2388 0.00012533 -0.5985 -0.00031411 -0.3597 -0.00018878 524.8270850299511 91.194 0.074768 94.655 94.638 94.713 3.4613 -0.011036 -4.824E-05 NaN 4.756 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 40440 24035 8724 14851 14860 0.11831093309933749 LLLMLSIVF 9 Unmodified _LLLMLSIVF_ 0 0 0 L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 524.827389 1047.64023 0.29422 0.00015442 -0.29182 -0.00015316 0.0024006 1.2599E-06 524.8274415387856 91.071 0.044876 94.697 94.665 94.71 3.626 0.030662 0.00027367 NaN 4.756 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 108950 24036 8724 14851 14860 0.11831093309933749 LLLMLSIVF 9 Unmodified _LLLMLSIVF_ 0 0 0 L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense L1M2_dup962|chr2:119903585-119906203:+|2.9852855276342907|0.0477698946300273|5.97|151.0|134|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 524.827389 1047.64023 0.44696 0.00023458 -0.6878 -0.00036098 -0.24084 -0.0001264 524.8269028385698 90.829 0.13133 94.676 94.619 94.75 3.847 0.0098411 -0.00014197 NaN 4.756 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 153830 24037 8724 14851 14860 0.11831093309933749 LLLMWWWW 8 Unmodified _LLLMWWWW_ 0 0 0 REV__L1MCa_dup2635|chr6:34310532-34312096:+|2.775605354988381|0.0821619531459702|5.08|151.0|113|3|anti-sense REV__L1MCa_dup2635|chr6:34310532-34312096:+|2.775605354988381|0.0821619531459702|5.08|151.0|113|3|anti-sense MSMS UPN47_class_I_Rep_3 4 617.3161010742188 2 617.317523 1232.62049 NaN NaN NaN NaN NaN NaN NaN 73.833 1 77.069 76.569 77.569 3.2363 0 0 0 0.40738 1 18254 18254 0.79363 0.19213 1 + 24038 27196 14852 14861 28280 28280 0.013487620898331443 LLLNEKHKML 10 Unmodified _LLLNEKHKML_ 0 0 0 REV__ENST00000320876.10_2_18:2673315-2674053:+|nuORF REV__ENST00000320876.10_2_18:2673315-2674053:+|nuORF MSMS UPN48_class_I_Rep_3 7 619.8696899414062 2 619.868108 1237.72166 NaN NaN NaN NaN NaN NaN NaN 70.691 1 74.21 73.71 74.71 3.5185 0 0 0 0.53105 1 16370 16370 1.4819 0 1 + 24039 21735 14853 14862 28281 28281 0.11231169001871422 LLLNQFAIT 9 Unmodified _LLLNQFAIT_ 0 0 0 L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|218|3|anti-sense L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|218|3|anti-sense L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|218|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.8060302734375 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 41.282 1 44.788 44.288 45.288 3.506 0 0 0 0.36505 1 7506 7506 7.2892 0 1 24040 9452 14854 14863 28282 28282 0.08699503999741864 LLLNWSETL 9 Unmodified _LLLNWSETL_ 0 0 0 REV__nc|ENSG00000160223|O75144-2|ICOSLG REV__nc|ENSG00000160223|O75144-2|ICOSLG MULTI-MSMS UPN47_class_I_Rep_1 2 544.8037109375 2 544.802957 1087.59136 0.39023 0.0002126 -0.073902 -4.0262E-05 0.31633 0.00017234 544.8028707512447 66.512 0.71281 69.869 69.538 70.251 3.3576 78 49 2 0 0 0 0.28552 1 16022 16022 14.838 1.7958 1 160530 + 24041 32028 14855 14864 28283 28283 0.05106896274514838 LLLPDCPC 8 Unmodified _LLLPDCPC_ 0 0 0 L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|279|3|anti-sense;L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|323|3|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|279|3|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|279|3|anti-sense MSMS UPN48_class_I_Rep_1 5 436.8792419433594 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 81.123 1 84.686 84.186 85.186 3.5624 0 0 0 0.40604 1 19338 19338 2.5775 1.7838 1 24042 14343 14856 14865 28284 28284 -0.027713935206861606 LLLPDCPC 8 Unmodified _LLLPDCPC_ 0 0 0 L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|279|3|anti-sense;L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|323|3|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|279|3|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|279|3|anti-sense MSMS UPN48_class_I_Rep_1 5 437.21527099609375 2 437.214075 872.413596 NaN NaN NaN NaN NaN NaN NaN 96.289 1 99.902 99.402 100.4 3.6124 0 0 0 0.40604 1 23193 23193 2.5775 0.51773 1 24043 14343 14856 14865 28285 28285 -0.027713935206861606 LLLPDRLALVW 11 Unmodified _LLLPDRLALVW_ 0 0 0 Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|67|2|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|67|2|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|67|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.9395751953125 3 436.939458 1307.79654 -0.050378 -2.2012E-05 0.63623 0.00027799 0.58585 0.00025598 437.2741189410975 46.502 0.50916 50.021 49.771 50.281 3.5192 51 30 2 0 0 0 0.66974 1 9076 9076 1.4551 0.12547 1 398520 24044 33274 14857 14866 28286 28286 0.15495674804719783 LLLPIRTKAI 10 Unmodified _LLLPIRTKAI_ 0 0 0 REV__L1PA7_dup11745|chr15:49005589-49007545:-|1.721788213162628|0.2225065777971876|2.95|151.0|22|2|sense REV__L1PA7_dup11745|chr15:49005589-49007545:-|1.721788213162628|0.2225065777971876|2.95|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 569.3895263671875 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 71.956 1 75.175 74.675 75.675 3.2188 0 0 0 0.53105 1 17686 17686 0.45834 0 1 + 24045 29998 14858 14867 28287 28287 0.20160307121614096 LLLPKCLL 8 Unmodified _LLLPKCLL_ 0 0 0 L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|64|2|anti-sense L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|64|2|anti-sense L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|64|2|anti-sense MSMS UPN47_class_I_Rep_2 3 456.8022155761719 2 456.801174 911.587796 NaN NaN NaN NaN NaN NaN NaN 30.385 1 33.867 33.367 34.367 3.4821 0 0 0 0.40738 1 5000 5000 0.79363 0 1 24046 13623 14859 14868 28288 28288 0.1284655496697269 LLLPLGQSIV 10 Unmodified _LLLPLGQSIV_ 0 0 0 REV__LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|23|2|anti-sense REV__LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_1 2 526.838134765625 2 526.839342 1051.66413 NaN NaN NaN NaN NaN NaN NaN 75.573 1 78.976 78.476 79.476 3.4034 0 0 0 0.53105 1 18662 18662 1.3295 0 1 + 24047 30988 14860 14869 28289 28289 0.14036650067941991 LLLPLLLKLLE 11 Unmodified _LLLPLLLKLLE_ 0 0 0 REV__nc|ENSG00000184634|Q93074-3|MED12 REV__nc|ENSG00000184634|Q93074-3|MED12 MSMS UPN46_class_I_Rep_3 1 639.44580078125 2 639.443975 1276.8734 NaN NaN NaN NaN NaN NaN NaN 72.879 1 72.879 72.379 73.379 0 0 0 0 0.38417 1 16867 16867 0 0 1 + 24048 20824 14861 14870 28290 28290 0.24603473301249323 LLLPLLLLLAL 11 Unmodified _LLLPLLLLLAL_ 0 0 0 ENSG00000168140|ENST00000304735|VASN ENSG00000168140|ENST00000304735|VASN ENSG00000168140|ENST00000304735|VASN MSMS UPN48_class_I_Rep_3 7 602.9371337890625 2 602.935786 1203.85702 NaN NaN NaN NaN NaN NaN NaN 28.401 1 32.143 31.643 32.643 3.7424 0 0 0 0.38417 1 3856 3856 0 0 1 24049 4355 14862 14871 28291 28291 0.2632439213516591 LLLPRKKA 8 Unmodified _LLLPRKKA_ 0 0 0 ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF MSMS UPN46_class_I_Rep_3 1 469.8303527832031 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 96.999 1 96.999 96.499 97.499 0 0 0 0 0.40746 1 23593 23593 0.69038 0 1 24050 7276 14863 14872 28292 28292 0.17235524198792973 LLLPRKKA 8 Unmodified _LLLPRKKA_ 0 0 0 ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF MSMS UPN47_class_I_Rep_2 3 469.8298645019531 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.664 1 98.136 97.636 98.636 3.472 0 0 0 0.40581 1 23324 23324 2.8892 0 1 24051 7276 14863 14872 28293 28293 0.17235524198792973 LLLPSDRIVRA 11 Unmodified _LLLPSDRIVRA_ 0 0 0 REV__L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense REV__L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 626.8900146484375 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 104.3 1 107.83 107.33 108.33 3.5289 0 0 0 0.38417 1 25334 25334 5.2969 0 1 + 24052 28353 14864 14873 28294 28294 0.1504931613953886 LLLPSDRIVRA 11 Unmodified _LLLPSDRIVRA_ 0 0 0 REV__L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense REV__L1MEc_dup11419|chrX:154725315-154726362:+|1.223569855043679|0.0124002899329529|6.62|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_2 6 626.8900146484375 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 104.07 1 107.77 107.27 108.27 3.6991 0 0 0 0.38417 1 24622 24622 2.7352 0 1 + 24053 28353 14864 14873 28295 28295 0.1504931613953886 LLLPVLLTT 9 Unmodified _LLLPVLLTT_ 0 0 0 HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|312|1|anti-sense;HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|326|2|anti-sense HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|312|1|anti-sense HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|312|1|anti-sense MSMS UPN48_class_I_Rep_2 6 491.8475036621094 2 491.830986 981.647419 NaN NaN NaN NaN NaN NaN NaN 109.55 1 113.22 112.72 113.72 3.6715 0 0 0 0.39428 1 26084 26084 2.0598 0 1 24054 8115 14865 14874 28296 28296 0.1558614918197918 LLLPWRWLA 9 Unmodified _LLLPWRWLA_ 0 0 0 ENST00000485978.1_1_9:136338979-136343630:-|nuORF;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6 ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENST00000485978.1_1_9:136338979-136343630:-|nuORF MSMS UPN47_class_I_Rep_1 2 584.3575439453125 2 584.355494 1166.69644 NaN NaN NaN NaN NaN NaN NaN 84.147 1 87.713 87.213 88.213 3.5655 0 0 0 0.39428 1 21052 21052 2.0598 0.40713 1 24055 3869 14866 14875 28297 28297 0.11975482261595971 LLLQLGQK 8 Unmodified _LLLQLGQK_ 0 0 0 ENST00000366835.7_1_1:226059699-226067035:-|nuORF;ENST00000436966.1_1_1:226059699-226065338:-|nuORF;L1MEc_dup983|chr1:148423179-148423691:-|3.2617354683928883|0.2223587573715792|3.87|151.0|21|1|anti-sense ENST00000366835.7_1_1:226059699-226067035:-|nuORF ENST00000366835.7_1_1:226059699-226067035:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 456.79754638671875 2 456.797478 911.580402 -0.89997 -0.00041111 0.63273 0.00028903 -0.26725 -0.00012208 456.7976772146846 23.219 0.53136 26.569 26.331 26.863 3.3503 55 42 2 0 0 0 0.82752 1 2958 2958 2.3027 0 1 48402 24056 6340 14867 14876 28298 28298 0.1210753869090695 LLLQPLKQ 8 Unmodified _LLLQPLKQ_ 0 0 0 AluSp_dup26452|chrX:74269113-74269396:+|3.34692780063855|0.1035027245206109|5.02|151.0|12|1|anti-sense AluSp_dup26452|chrX:74269113-74269396:+|3.34692780063855|0.1035027245206109|5.02|151.0|12|1|anti-sense AluSp_dup26452|chrX:74269113-74269396:+|3.34692780063855|0.1035027245206109|5.02|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.81585693359375 2 476.813128 951.611703 NaN NaN NaN NaN NaN NaN NaN 25.228 1 28.977 28.477 29.477 3.7495 0 0 0 0.40746 1 3428 3428 0.69038 0 1 24057 233 14868 14877 28299 28299 0.13396111725000992 LLLQPLKQ 8 Unmodified _LLLQPLKQ_ 0 0 0 AluSp_dup26452|chrX:74269113-74269396:+|3.34692780063855|0.1035027245206109|5.02|151.0|12|1|anti-sense AluSp_dup26452|chrX:74269113-74269396:+|3.34692780063855|0.1035027245206109|5.02|151.0|12|1|anti-sense AluSp_dup26452|chrX:74269113-74269396:+|3.34692780063855|0.1035027245206109|5.02|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.814697265625 2 476.813128 951.611703 NaN NaN NaN NaN NaN NaN NaN 19.89 1 23.428 22.928 23.928 3.5378 0 0 0 0.40746 1 1584 1584 0.69038 0 1 24058 233 14868 14877 28300 28300 0.13396111725000992 LLLQQQQQL 9 Unmodified _LLLQQQQQL_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MULTI-MSMS UPN47_class_I_Rep_1 2 556.3267822265625 2 556.327131 1110.63971 0.33615 0.00018701 -0.17031 -9.4748E-05 0.16584 9.2261E-05 556.3270994451321 53.708 0.47337 57.236 57.007 57.48 3.5278 51 29 3 0 0 0 0.097406 2 12010 12010;12081 34.402 0 1 90884 + 24059 21313 14869 14878 28301;28302 28301 0.08881389914427018 LLLQQQQQL 9 Unmodified _LLLQQQQQL_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MULTI-MSMS UPN47_class_I_Rep_2 3 556.8292236328125 2 556.327131 1110.63971 0.517 0.00028762 -0.65638 -0.00036516 -0.13938 -7.754E-05 556.3267576608664 53.85 0.53802 57.169 56.952 57.49 3.3187 70 33 3 0 0 0 0.052902 3 12101 12085;12101;12129 47.749 0 1 101510 + 24060 21313 14869 14878 28303;28304;28305 28304 0.08881389914427018 LLLQQQQQL 9 Unmodified _LLLQQQQQL_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MULTI-MSMS UPN47_class_I_Rep_3 4 556.3271484375 2 556.327131 1110.63971 0.465 0.00025869 -0.59112 -0.00032886 -0.12613 -7.0169E-05 556.3268473029536 53.99 0.47454 57.175 56.928 57.403 3.1856 43 29 2 0 0 0 0.047711 2 12196 12196;12249 49.933 0 1 97375 + 24061 21313 14869 14878 28306;28307 28306 0.08881389914427018 LLLQQQQQL 9 Unmodified _LLLQQQQQL_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 556.327131 1110.63971 0.33615 0.00018701 -0.17031 -9.4748E-05 0.16584 9.2261E-05 556.3270994451321 53.708 0.47337 57.236 57.007 57.48 3.5278 0.042339 0.0003645 NaN 49.933 51 29 3 NaN NaN NaN NaN 0 NaN NaN 0 90884 + 24062 21313 14869 14878 0.08881389914427018 LLLQRGLLY 9 Unmodified _LLLQRGLLY_ 0 0 0 L1MCb_dup1739|chr13:21564003-21565064:-|2.856586367951177|0.128794867524288|4.47|151.0|55|2|anti-sense L1MCb_dup1739|chr13:21564003-21565064:-|2.856586367951177|0.128794867524288|4.47|151.0|55|2|anti-sense L1MCb_dup1739|chr13:21564003-21565064:-|2.856586367951177|0.128794867524288|4.47|151.0|55|2|anti-sense MSMS UPN47_class_I_Rep_2 3 544.84521484375 2 544.844959 1087.67537 NaN NaN NaN NaN NaN NaN NaN 66.077 1 69.335 68.835 69.835 3.2588 0 0 0 0.38478 1 15852 15852 4.3292 0 1 24063 11849 14870 14879 28308 28308 0.13503472162119579 LLLQRGLLY 9 Unmodified _LLLQRGLLY_ 0 0 0 L1MCb_dup1739|chr13:21564003-21565064:-|2.856586367951177|0.128794867524288|4.47|151.0|55|2|anti-sense L1MCb_dup1739|chr13:21564003-21565064:-|2.856586367951177|0.128794867524288|4.47|151.0|55|2|anti-sense L1MCb_dup1739|chr13:21564003-21565064:-|2.856586367951177|0.128794867524288|4.47|151.0|55|2|anti-sense MSMS UPN47_class_I_Rep_3 4 544.8447875976562 2 544.844959 1087.67537 NaN NaN NaN NaN NaN NaN NaN 66.245 1 69.431 68.931 69.931 3.1853 0 0 0 0.29868 1 15964 15964 10.824 0 1 24064 11849 14870 14879 28309 28309 0.13503472162119579 LLLQVFFV 8 Unmodified _LLLQVFFV_ 0 0 0 L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|163|3|anti-sense L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|163|3|anti-sense L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|163|3|anti-sense MSMS UPN47_class_I_Rep_2 3 489.8062744140625 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 103.19 1 106.71 106.21 107.21 3.5231 0 0 0 0.40746 1 25091 25091 0.69038 0 1 24065 13277 14871 14880 28310 28310 0.105296108390462 LLLRGISSSS 10 Unmodified _LLLRGISSSS_ 0 0 0 L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.8063354492188 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 87.026 1 90.644 90.144 91.144 3.6187 0 0 0 0.53105 1 20849 20849 0.40072 0.40072 1 24066 12914 14872 14881 28311 28311 0.0829741450606889 LLLRGLGM 8 Unmodified _LLLRGLGM_ 0 0 0 HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|182|3|anti-sense HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|182|3|anti-sense HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|182|3|anti-sense MSMS UPN48_class_I_Rep_1 5 436.7746887207031 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 93.742 1 97.362 96.862 97.862 3.6208 0 0 0 0.40738 1 22537 22537 0.79363 0 1 24067 8024 14873 14882 28312 28312 0.09043927130312568 LLLRHLQH 8 Unmodified _LLLRHLQH_ 0 0 0 ENST00000327876.4_1_2:47747956-47748880:-|nuORF ENST00000327876.4_1_2:47747956-47748880:-|nuORF ENST00000327876.4_1_2:47747956-47748880:-|nuORF MSMS UPN47_class_I_Rep_3 4 515.7738647460938 2 515.319443 1028.62433 NaN NaN NaN NaN NaN NaN NaN 68.223 1 71.421 70.921 71.921 3.1977 0 0 0 0.40625 1 16563 16563 2.3027 0 1 24068 6177 14874 14883 28313 28313 0.11116567907879471 LLLRKLRT 8 Unmodified _LLLRKLRT_ 0 0 0 L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|48|3|anti-sense L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|48|3|anti-sense L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|48|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 506.852783203125 2 506.853119 1011.69168 0.31578 0.00016005 0.5016 0.00025424 0.81737 0.00041429 506.85334584499776 108.82 0.1645 108.82 108.71 108.88 0 23 15 2 0 0 0 0.82752 1 26662 26662 0.79363 0 1 12044000 24069 12527 14875 14884 28314 28314 0.18630598118852504 LLLRQYMI 8 Unmodified _LLLRQYMI_ 0 0 0 L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|39|1|anti-sense L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|39|1|anti-sense L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|39|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 525.365966796875 2 525.312438 1048.61032 0.49057 0.0002577 3.8801 0.0020383 4.3707 0.002296 525.8163346814911 74.607 0.031342 78.158 78.135 78.167 3.5505 5 3 2 0 0 0 0.72333 1 17479 17479 0.69038 0 1 43515 24070 9118 14876 14885 28315 28315 0.08796154364586073 LLLRQYMI 8 Unmodified _LLLRQYMI_ 0 0 0 L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|39|1|anti-sense L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|39|1|anti-sense L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|39|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 525.312438 1048.61032 0.38733 0.00020347 1.5977 0.00083927 1.985 0.0010427 525.3131888324675 74.549 0.056396 78.138 78.108 78.164 3.59 -0.0096782 -0.00014861 NaN 0.69038 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 69679 24071 9118 14876 14885 0.08796154364586073 LLLRRVNS 8 Unmodified _LLLRRVNS_ 0 0 0 nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 MSMS UPN47_class_I_Rep_1 2 485.8119812011719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.157 1 60.614 60.114 61.114 3.4572 0 0 0 0.40581 1 13106 13106 2.8892 0 1 24072 4867 14877 14886 28316 28316 0.12232861670997863 LLLRRVNS 8 Unmodified _LLLRRVNS_ 0 0 0 nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 MSMS UPN47_class_I_Rep_2 3 485.8121032714844 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 96.178 1 99.657 99.157 100.16 3.4791 0 0 0 0.40738 1 23644 23644 0.79363 0 1 24073 4867 14877 14886 28317 28317 0.12232861670997863 LLLSIRDAA 9 Unmodified _LLLSIRDAA_ 0 0 0 REV__L1MC3_dup3878|chr5:54051514-54053090:+|1.930206038945857|0.0200609976736545|6.59|151.0|76|2|anti-sense REV__L1MC3_dup3878|chr5:54051514-54053090:+|1.930206038945857|0.0200609976736545|6.59|151.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 486.2980041503906 2 486.297842 970.581131 0.0067445 3.2798E-06 0.090349 4.3937E-05 0.097094 4.7216E-05 486.29792566870947 50.489 0.53085 54.118 53.846 54.376 3.6285 38 23 2 0 0 0 0.43982 1 11033 11033 5.7319 0 1 95542 + 24074 26737 14878 14887 28318 28318 0.09466333339946686 LLLSLKPP 8 Unmodified _LLLSLKPP_ 0 0 0 REV__Tigger2a_dup2513|chr12:132577975-132578199:-|2.1724550004371306|0.4308851499835026|2.33|151.0|11|2|anti-sense REV__Tigger2a_dup2513|chr12:132577975-132578199:-|2.1724550004371306|0.4308851499835026|2.33|151.0|11|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.7993469238281 2 440.796946 879.57934 -0.67929 -0.00029943 2.6832 0.0011827 2.0039 0.0008833 440.7997718609633 25.327 0.95996 28.81 28.39 29.35 3.483 135 92 2 0 0 0 0.72333 1 3443 3443 0.79363 0 1 69965 + 24075 32685 14879 14888 28319 28319 0.1347332432200119 LLLSLKPP 8 Unmodified _LLLSLKPP_ 0 0 0 REV__Tigger2a_dup2513|chr12:132577975-132578199:-|2.1724550004371306|0.4308851499835026|2.33|151.0|11|2|anti-sense REV__Tigger2a_dup2513|chr12:132577975-132578199:-|2.1724550004371306|0.4308851499835026|2.33|151.0|11|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 440.796946 879.57934 -0.42515 -0.00018741 3.7189 0.0016393 3.2938 0.0014519 440.79964608359376 24.714 0.76646 28.463 28.051 28.817 3.7495 -0.075115 0.00087281 NaN 0.79363 93 63 2 NaN NaN NaN NaN 0 NaN NaN 0 121290 + 24076 32685 14879 14888 0.1347332432200119 LLLSPTPA 8 Unmodified _LLLSPTPA_ 0 0 0 L1M4b_dup3148|chr11:116949631-116950307:-|1.2482383979821918|0.0314212251258845|5.31|151.0|13|2|sense L1M4b_dup3148|chr11:116949631-116950307:-|1.2482383979821918|0.0314212251258845|5.31|151.0|13|2|sense L1M4b_dup3148|chr11:116949631-116950307:-|1.2482383979821918|0.0314212251258845|5.31|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 406.2493591308594 2 406.249829 810.485105 NaN NaN NaN NaN NaN NaN NaN 82.633 1 86.171 85.671 86.671 3.5386 0 0 0 0.40738 1 20648 20648 0.79363 0 1 24077 9003 14880 14889 28320 28320 0.07228185499843676 LLLSRQGR 8 Unmodified _LLLSRQGR_ 0 0 0 REV__nc|ENSG00000171307|Q969W1-4|ZDHHC16 REV__nc|ENSG00000171307|Q969W1-4|ZDHHC16 MSMS UPN48_class_I_Rep_3 7 471.796142578125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 44.995 1 48.632 48.132 49.132 3.6372 0 0 0 0.40604 1 8565 8565 2.5775 0 1 + 24078 20401 14881 14890 28321 28321 0.10392288636910507 LLLSRWGG 8 Unmodified _LLLSRWGG_ 0 0 0 REV__ENST00000581193.5_1_18:3262441-3262750:+|nuORF REV__ENST00000581193.5_1_18:3262441-3262750:+|nuORF MSMS UPN47_class_I_Rep_2 3 451.06695556640625 2 451.266345 900.518136 NaN NaN NaN NaN NaN NaN NaN 28.692 1 32.191 31.691 32.691 3.4986 0 0 0 0.40738 1 4488 4488 0.79363 0 1 + 24079 23128 14882 14891 28322 28322 0.06389812342581536 LLLSSNLIL 9 Unmodified _LLLSSNLIL_ 0 0 0 L1ME3A_dup2116|chr2:171143555-171144717:+|2.174558939258433|0.0097038351311987|7.81|151.0|58|2|anti-sense L1ME3A_dup2116|chr2:171143555-171144717:+|2.174558939258433|0.0097038351311987|7.81|151.0|58|2|anti-sense L1ME3A_dup2116|chr2:171143555-171144717:+|2.174558939258433|0.0097038351311987|7.81|151.0|58|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.3183288574219 2 493.318243 984.621933 0.21228 0.00010472 -0.048337 -2.3846E-05 0.16394 8.0877E-05 493.31816559283703 69.671 0.92643 73.126 72.785 73.711 3.4548 195 71 3 0 0 0 0.10817 1 16217 16217 32.305 0 1 1246800 24080 12659 14883 14892 28323 28323 0.12900674659567812 LLLSVGTTILV 11 Unmodified _LLLSVGTTILV_ 0 0 0 REV__L1MC4_dup21418|chr17:9353183-9353764:-|1.9507357773012728|0.0256746683381933|6.25|151.0|41|2|anti-sense REV__L1MC4_dup21418|chr17:9353183-9353764:-|1.9507357773012728|0.0256746683381933|6.25|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.8638305664062 2 564.865557 1127.71656 NaN NaN NaN NaN NaN NaN NaN 82.33 1 85.999 85.499 86.499 3.669 0 0 0 0.38417 1 19556 19556 1.1933 0 1 + 24081 26875 14884 14893 28324 28324 0.15781188410892355 LLLSVGYH 8 Unmodified _LLLSVGYH_ 0 0 0 HERVH48-int_dup8|chr1:246635124-246635930:-|1.3482122911600132|0.0910138061422784|3.89|150.0|28|2|anti-sense HERVH48-int_dup8|chr1:246635124-246635930:-|1.3482122911600132|0.0910138061422784|3.89|150.0|28|2|anti-sense HERVH48-int_dup8|chr1:246635124-246635930:-|1.3482122911600132|0.0910138061422784|3.89|150.0|28|2|anti-sense MSMS UPN48_class_I_Rep_2 6 451.2630920410156 2 451.260728 900.506903 NaN NaN NaN NaN NaN NaN NaN 119.27 1 122.93 122.43 123.43 3.6652 0 0 0 0.40738 1 28620 28620 0.79363 0 1 24082 8174 14885 14894 28325 28325 0.05266990248435377 LLLTDINI 8 Unmodified _LLLTDINI_ 0 0 0 REV__L1MC4_dup20290|chr15:65712929-65713579:-|1.4723094049607175|0.0407591736517734|5.17|150.0|36|1|anti-sense REV__L1MC4_dup20290|chr15:65712929-65713579:-|1.4723094049607175|0.0407591736517734|5.17|150.0|36|1|anti-sense MSMS UPN48_class_I_Rep_2 6 457.7799377441406 2 457.781493 913.548434 NaN NaN NaN NaN NaN NaN NaN 81.435 1 85.092 84.592 85.592 3.6567 0 0 0 0.40625 1 19331 19331 2.3027 0 1 + 24083 26864 14886 14895 28326 28326 0.08820126217085544 LLLTFHGLL 9 Unmodified _LLLTFHGLL_ 0 0 0 REV__L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|68|1|anti-sense REV__L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|68|1|anti-sense MSMS UPN48_class_I_Rep_2 6 513.8189086914062 2 513.820953 1025.62735 NaN NaN NaN NaN NaN NaN NaN 57.816 1 61.33 60.83 61.83 3.5142 0 0 0 0.35339 1 12537 12537 7.9102 2.1497 1 + 24084 27838 14887 14896 28327 28327 0.11556398242055366 LLLTHGYRLK 10 Unmodified _LLLTHGYRLK_ 0 0 0 REV__ENST00000302450.10_1_2:113513962-113514019:-|nuORF REV__ENST00000302450.10_1_2:113513962-113514019:-|nuORF MSMS UPN48_class_I_Rep_2 6 405.2405700683594 3 405.252036 1212.73428 NaN NaN NaN NaN NaN NaN NaN 76.037 1 79.638 79.138 80.138 3.6011 0 0 0 0.53105 1 17949 17949 1.9064 0.45126 1 + 24085 21675 14888 14897 28328 28328 0.13641948456393038 LLLTHRLA 8 Unmodified _LLLTHRLA_ 0 0 0 REV__ENST00000526941.1_1_11:118402516-118402606:+|nuORF REV__ENST00000526941.1_1_11:118402516-118402606:+|nuORF MSMS UPN47_class_I_Rep_2 3 468.8014831542969 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 89.262 1 92.715 92.215 93.215 3.4525 0 0 0 0.40738 1 22178 22178 0.79363 0 1 + 24086 19621 14889 14898 28329 28329 0.12126360785021006 LLLTIFGVIPK 11 Unmodified _LLLTIFGVIPK_ 0 0 0 L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|62|2|anti-sense L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|62|2|anti-sense L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|62|2|anti-sense MSMS UPN48_class_I_Rep_2 6 405.26812744140625 3 405.268804 1212.78458 NaN NaN NaN NaN NaN NaN NaN 99.498 1 103.26 102.76 103.76 3.7575 0 0 0 0.38417 1 23627 23627 0.50596 0.23694 1 24087 10576 14890 14899 28330 28330 0.18670058061547934 LLLTRLKR 8 Unmodified _LLLTRLKR_ 0 0 0 REV__ENSG00000171017|ENST00000306708|LRRC8E REV__ENSG00000171017|ENST00000306708|LRRC8E MULTI-MSMS UPN47_class_I_Rep_1 2 506.8531188964844 2 506.853119 1011.69168 0.33749 0.00017106 -0.093251 -4.7264E-05 0.24424 0.00012379 506.85294205200853 108.32 0.79624 111.96 111.68 112.48 3.6355 201 79 4 0 0 0 0.82752 1 26530 26530 0.79363 0 1 20784000 + 24088 20394 14891 14900 28331 28331 0.18630598118829766 LLLTTLLLL 9 Unmodified _LLLTTLLLL_ 0 0 0 ENST00000431567.5_1_2:95941253-95943708:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95940333-95943144:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 506.8529052734375 2 506.854461 1011.69437 0.35412 0.00017949 -3.6774 -0.0018639 -3.3233 -0.0016844 507.3535990706494 107.72 0.10742 111.25 111.17 111.28 3.5345 21 14 2 0 0 0 0.48414 1 26061 26061 2.3027 0 1 1401400 24089 3691 14892 14901 28332 28332 0.18899008733137634 LLLTTLLLL 9 Unmodified _LLLTTLLLL_ 0 0 0 ENST00000431567.5_1_2:95941253-95943708:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95940333-95943144:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF MSMS UPN47_class_I_Rep_3 4 506.8528747558594 2 506.854461 1011.69437 NaN NaN NaN NaN NaN NaN NaN 107.71 1 111.25 110.75 111.75 3.5382 0 0 0 0.39326 1 26300 26300 2.3027 0 1 24090 3691 14892 14901 28333 28333 0.18899008733137634 LLLTTLLLL 9 Unmodified _LLLTTLLLL_ 0 0 0 ENST00000431567.5_1_2:95941253-95943708:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95940333-95943144:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF ENST00000431567.5_1_2:95941253-95943708:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.854461 1011.69437 0.33629 0.00017045 -2.6987 -0.0013678 -2.3624 -0.0011974 506.8529317284602 107.9 0.087784 111.53 111.48 111.57 3.6355 0.14197 0.00052875 NaN 2.3027 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 769940 24091 3691 14892 14901 0.18899008733137634 LLLVNPIS 8 Unmodified _LLLVNPIS_ 0 0 0 REV__L1ME3Cz_dup5844|chr8:30074426-30074895:+|1.396148650332946|0.0273651740308527|5.67|151.0|14|2|sense REV__L1ME3Cz_dup5844|chr8:30074426-30074895:+|1.396148650332946|0.0273651740308527|5.67|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 434.7787780761719 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 81.299 1 81.299 80.799 81.799 0 0 0 0 0.39624 1 19194 19194 9.3474 0 1 + 24092 28126 14893 14902 28334 28334 0.10388447425293634 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN46_class_I_Rep_3 1 645.3785400390625 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 17.696 1 17.696 17.196 18.196 0 0 0 0 0.53105 1 1430 1430 1.4819 0 1 + 24093 20328 14894 14903 28335 28335 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN46_class_I_Rep_3 1 645.3784790039062 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 99.077 1 99.077 98.577 99.577 0 0 0 0 0.53105 1 24130 24130 1.4819 0 1 + 24094 20328 14894 14903 28336 28336 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN47_class_I_Rep_2 3 645.3282470703125 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 50.055 1 53.398 52.898 53.898 3.3431 0 0 0 0.53105 1 10969 10969 1.4819 0 1 + 24095 20328 14894 14903 28337 28337 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN47_class_I_Rep_3 4 645.8132934570312 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 61.024 1 64.189 63.689 64.689 3.1651 0 0 0 0.53105 1 14367 14367 1.4819 0 1 + 24096 20328 14894 14903 28338 28338 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN48_class_I_Rep_1 5 645.8441772460938 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 53.468 1 56.987 56.487 57.487 3.5192 0 0 0 0.53105 1 11225 11225 1.4819 0 1 + 24097 20328 14894 14903 28339 28339 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN48_class_I_Rep_1 5 645.3784790039062 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 60.832 1 64.306 63.806 64.806 3.4737 0 0 0 0.53105 1 13489 13489 1.4819 0 1 + 24098 20328 14894 14903 28340 28340 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN48_class_I_Rep_3 7 645.3779907226562 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 101.88 1 105.65 105.15 106.15 3.776 0 0 0 0.53105 1 24082 24082 1.4819 0 1 + 24099 20328 14894 14903 28341 28341 0.10760466687929693 LLLWHTRTHL 10 Unmodified _LLLWHTRTHL_ 0 0 0 REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron REV__ENSG00000169826.8,CSGALNACT2,chr10,+,I2.1,43155811,43158714|38|9.82|1|intron MSMS UPN48_class_I_Rep_3 7 645.3789672851562 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 102.24 1 106.02 105.52 106.52 3.776 0 0 0 0.53105 1 24160 24160 1.4819 0 1 + 24100 20328 14894 14903 28342 28342 0.10760466687929693 LLLWRHSK 8 Unmodified _LLLWRHSK_ 0 0 0 REV__L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|116|2|anti-sense REV__L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|116|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.8216552734375 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 35.065 1 35.065 34.565 35.565 0 0 0 0 0.40738 1 6339 6339 0.79363 0.10326 1 + 24101 30665 14895 14904 28343 28343 0.10533452050663072 LLLWYPIAA 9 Unmodified _LLLWYPIAA_ 0 0 0 REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF MSMS UPN48_class_I_Rep_2 6 530.3170166015625 2 530.315503 1058.61645 NaN NaN NaN NaN NaN NaN NaN 76.813 1 80.425 79.925 80.925 3.6116 0 0 0 0.39326 1 18147 18147 2.3027 0.4585 1 + 24102 17568 14896 14905 28344 28344 0.0894899586774045 LLLYEHIAD 9 Unmodified _LLLYEHIAD_ 0 0 0 REV__ENST00000504807.5_1_5:176939673-176941736:-|nuORF REV__ENST00000504807.5_1_5:176939673-176941736:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.7943725585938 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 40.067 1 43.808 43.308 44.308 3.7413 0 0 0 0.39326 1 7178 7178 2.3027 0 1 + 24103 20779 14897 14906 28345 28345 0.03634609757477847 LLLYGSIK 8 Unmodified _LLLYGSIK_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MSMS UPN47_class_I_Rep_1 2 453.78460693359375 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 56.989 1 60.446 59.946 60.946 3.4572 0 0 0 0.37715 1 13058 13058 15.768 7.1749 1 24104 3354 14898 14907 28346 28346 0.10204733942339317 LLLYGVWWF 9 Unmodified _LLLYGVWWF_ 0 0 0 REV__L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|121|1|anti-sense REV__L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|121|1|anti-sense MSMS UPN48_class_I_Rep_2 6 598.828125 2 598.828778 1195.643 NaN NaN NaN NaN NaN NaN NaN 44.93 1 48.692 48.192 49.192 3.7617 0 0 0 0.39326 1 8620 8620 2.3027 0 1 + 24105 29138 14899 14908 28347 28347 0.05300684759072283 LLLYPPLTWKL 11 Unmodified _LLLYPPLTWKL_ 0 0 0 MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.9480895996094 3 452.947842 1355.8217 0.19297 8.7404E-05 0.76966 0.00034861 0.96262 0.00043602 452.94812308794764 105.75 0.10053 105.75 105.69 105.79 0 29 13 3 0 0 0 0.66092 1 25793 25793 2.2527 0.51045 1 766530 24106 16016 14900 14909 28348 28348 0.1580172960730124 LLLYPPLTWKL 11 Unmodified _LLLYPPLTWKL_ 0 0 0 MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 452.947842 1355.8217 0.19297 8.7404E-05 0.76966 0.00034861 0.96262 0.00043602 452.94812308794764 105.75 0.10053 105.75 105.69 105.79 0 0.004183 -0.00027929 NaN 2.2527 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 766530 24107 16016 14900 14909 0.1580172960730124 LLLYPPLTWKL 11 Unmodified _LLLYPPLTWKL_ 0 0 0 MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 452.947842 1355.8217 0.061835 2.8008E-05 1.3025 0.00058998 1.3644 0.00061799 452.94833455570995 102.23 0.1184 105.75 105.68 105.8 3.5151 0.0038547 0.00044481 NaN 2.2527 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 56308 24108 16016 14900 14909 0.1580172960730124 LLLYPPLTWKL 11 Unmodified _LLLYPPLTWKL_ 0 0 0 MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|12|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 452.947842 1355.8217 0.15848 7.1782E-05 1.4267 0.00064621 1.5852 0.000718 452.948428101513 102.01 0.13506 105.74 105.7 105.84 3.7252 -0.0080377 0.00061351 NaN 2.2527 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 127590 24109 16016 14900 14909 0.1580172960730124 LLLYSGSSNV 10 Unmodified _LLLYSGSSNV_ 0 0 0 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 MULTI-MSMS UPN47_class_I_Rep_3 4 527.286376953125 2 526.784764 1051.55498 0.38514 0.00020288 -0.41382 -0.00021799 -0.028682 -1.5109E-05 527.2859024190924 79.82 0.35484 83.117 82.862 83.217 3.2967 49 36 2 0 0 0 0.55448 1 19974 19974 4.897 0.95262 1 173610 + 24110 19756 14901 14910 28349 28349 0.031260193778280154 LLLYSGSSNV 10 Unmodified _LLLYSGSSNV_ 0 0 0 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 MULTI-MATCH UPN47_class_I_Rep_2 3 2 526.784764 1051.55498 0.18733 9.8683E-05 -0.49462 -0.00026056 -0.30729 -0.00016188 526.7846751455627 79.689 0.087891 83.044 83.007 83.095 3.3554 -0.036139 -7.475E-05 NaN 4.897 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 55308 + 24111 19756 14901 14910 0.031260193778280154 LLMCYWIW 8 Unmodified _LLMCYWIW_ 0 0 0 L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|111|1|anti-sense L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|111|1|anti-sense L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|111|1|anti-sense MSMS UPN47_class_I_Rep_3 4 564.2378540039062 2 564.274467 1126.53438 NaN NaN NaN NaN NaN NaN NaN 119.85 1 123.26 122.76 123.76 3.4157 0 0 0 0.40738 1 29612 29612 0.79363 0 1 24112 14782 14902 14911 28350 28350 -0.02382565807215542 LLMLDFLI 8 Unmodified _LLMLDFLI_ 0 0 0 L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|23|1|anti-sense L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|23|1|anti-sense L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_3 4 489.237060546875 2 489.29064 976.566726 NaN NaN NaN NaN NaN NaN NaN 45.955 1 49.199 48.699 49.699 3.2441 0 0 0 0.40738 1 9786 9786 0.79363 0 1 24113 11887 14903 14912 28351 28351 0.07750544867451481 LLMLKIYY 8 Unmodified _LLMLKIYY_ 0 0 0 L1MC3_dup80|chr1:28933822-28934666:-|1.3905993362376612|0.0488514712743278|4.83|151.0|33|3|sense L1MC3_dup80|chr1:28933822-28934666:-|1.3905993362376612|0.0488514712743278|4.83|151.0|33|3|sense L1MC3_dup80|chr1:28933822-28934666:-|1.3905993362376612|0.0488514712743278|4.83|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.3132934570312 2 528.811739 1055.60893 -0.27671 -0.00014633 -0.17815 -9.4208E-05 -0.45486 -0.00024053 528.8116543014431 28.641 0.449 31.975 31.803 32.252 3.3337 63 37 2 0 0 0 0.82752 1 4492 4492 0.79363 0 1 45231 24114 11374 14904 14913 28352 28352 0.0833452027579824 LLMLLRFRLFI 11 Unmodified _LLMLLRFRLFI_ 0 0 0 REV__ENST00000380693.7_1_X:11777873-11777969:+|nuORF REV__ENST00000380693.7_1_X:11777873-11777969:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 478.6369323730469 3 478.972104 1433.89448 0.21203 0.00010155 -1.2043 -0.00057682 -0.99227 -0.00047527 478.97152724696474 65.354 0.56241 68.808 68.444 69.006 3.4541 55 39 2 0 0 0 22.551 1 14848 14848 1.3296 0.82369 1 288080 + 24115 22052 14905 14914 28353 28353 0.19489160129091943 LLMMKKFY 8 Unmodified _LLMMKKFY_ 0 0 0 REV__ENSG00000101292|ENST00000678254|PROKR2 REV__ENSG00000101292|ENST00000678254|PROKR2 MSMS UPN46_class_I_Rep_3 1 537.2957763671875 2 537.297942 1072.58133 NaN NaN NaN NaN NaN NaN NaN 54.432 1 54.432 53.932 54.932 0 0 0 0 0.37715 1 11784 11784 15.768 0 1 + 24116 18153 14906 14915 28354 28354 0.047942937439302113 LLMVVFGIR 9 Unmodified _LLMVVFGIR_ 0 0 0 L1M5_dup29845|chr9:112044558-112044887:+|1.0632845239956514|0.0539284873121806|4.3|151.0|14|1|anti-sense L1M5_dup29845|chr9:112044558-112044887:+|1.0632845239956514|0.0539284873121806|4.3|151.0|14|1|anti-sense L1M5_dup29845|chr9:112044558-112044887:+|1.0632845239956514|0.0539284873121806|4.3|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_2 3 524.7474365234375 2 524.322805 1046.63106 NaN NaN NaN NaN NaN NaN NaN 38.895 1 42.274 41.774 42.774 3.3785 0 0 0 0.39518 1 7580 7580 1.8442 0 1 24117 9137 14907 14916 28355 28355 0.10960744744238582 LLNANAEVWL 10 Unmodified _LLNANAEVWL_ 0 0 0 REV__Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|49|3|sense REV__Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|49|3|sense MSMS UPN48_class_I_Rep_2 6 571.7987670898438 2 571.813856 1141.61316 NaN NaN NaN NaN NaN NaN NaN 64.811 1 68.291 67.791 68.791 3.4792 0 0 0 0.53105 1 14683 14683 3.2813 0 1 + 24118 32351 14908 14917 28356 28356 0.04801701023075111 LLNEEQRAL 9 Unmodified _LLNEEQRAL_ 0 0 0 MER113_dup3534|chr20:48641155-48641482:+|1.5401912601292471|0.1485556632531371|3.37|151.0|2|1|sense MER113_dup3534|chr20:48641155-48641482:+|1.5401912601292471|0.1485556632531371|3.37|151.0|2|1|sense MER113_dup3534|chr20:48641155-48641482:+|1.5401912601292471|0.1485556632531371|3.37|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 543.3018188476562 2 543.301113 1084.58767 NaN NaN NaN NaN NaN NaN NaN 55.04 1 58.35 57.85 58.85 3.3102 0 0 0 0.37891 1 12490 12490 5.7319 0 1 24119 15772 14909 14918 28357 28357 0.048762265006644157 LLNEFYFKHFD 11 Unmodified _LLNEFYFKHFD_ 0 0 0 REV__nc|ENSG00000148660|Q13555-10|CAMK2G REV__nc|ENSG00000148660|Q13555-10|CAMK2G MULTI-SECPEP UPN48_class_I_Rep_2 6 491.7958984375 3 491.578477 1471.7136 0.33665 0.00016549 -0.0017622 -8.6628E-07 0.33489 0.00016462 491.5784304252128 60.339 0.38641 63.818 63.67 64.056 3.4785 42 32 2 0 0 0 22.551 1 13377 13377 1.4551 1.4551 1 139200 + 24120 19596 14910 14919 28358 28358 -0.0033868671391701355 LLNENFHADQ 10 Unmodified _LLNENFHADQ_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MSMS UPN46_class_I_Rep_3 1 600.783203125 2 600.785827 1199.5571 NaN NaN NaN NaN NaN NaN NaN 60.135 1 60.135 59.635 60.635 0 0 0 0 0.53105 1 13327 13327 5.7319 1.4026 1 + 24121 17552 14911 14920 28359 28359 -0.03469551884381872 LLNETEKY 8 Unmodified _LLNETEKY_ 0 0 0 nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;ENSG00000127914.18,AKAP9,chr7,+,I49.1,92101057,92102588|25|7.9|1|intron;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENSG00000127914.18,AKAP9,chr7,+,I49.1,92101057,92102588|25|7.9|2|intron nc|ENSG00000127914|Q99996-3|AKAP9 nc|ENSG00000127914|Q99996-3|AKAP9 MULTI-MSMS UPN47_class_I_Rep_1 2 505.2648620605469 2 505.263665 1008.51278 -0.19893 -0.00010051 0.73617 0.00037196 0.53724 0.00027145 505.264071009894 40.529 0.21538 44.2 44.081 44.296 3.6719 23 15 2 0 0 0 0.82752 1 8038 8038 10.074 0 1 52897 24122 2577 14912 14921 28360 28360 0.008860439694331035 LLNFFRNVLL 10 Unmodified _LLNFFRNVLL_ 0 0 0 L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|134|3|anti-sense L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|134|3|anti-sense L1MEf_dup7661|chr10:101948413-101950336:+|1.5781024155533383|0.0096722240397363|7.35|150.0|134|3|anti-sense MSMS UPN47_class_I_Rep_1 2 624.8751220703125 2 624.876791 1247.73903 NaN NaN NaN NaN NaN NaN NaN 92.257 1 95.978 95.478 96.478 3.7209 0 0 0 0.53105 1 22996 22996 1.4819 0.15237 1 24123 13321 14913 14922 28361 28361 0.12506832599183326 LLNFKLYYK 9 Unmodified _LLNFKLYYK_ 0 0 0 L1PA15_dup2471|chr5:39238993-39241335:+|1.506811677124802|0.0176242468656068|6.42|151.0|11|1|sense L1PA15_dup2471|chr5:39238993-39241335:+|1.506811677124802|0.0176242468656068|6.42|151.0|11|1|sense L1PA15_dup2471|chr5:39238993-39241335:+|1.506811677124802|0.0176242468656068|6.42|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 601.352294921875 2 601.352617 1200.69068 NaN NaN NaN NaN NaN NaN NaN 80.38 1 80.38 79.88 80.88 0 0 0 0 0.4007 1 18932 18932 0.52476 0 1 24124 13900 14914 14923 28362 28362 0.09836338959257773 LLNFSPGNL 9 Unmodified _LLNFSPGNL_ 0 0 0 ENSG00000129988|ENST00000217407|LBP ENSG00000129988|ENST00000217407|LBP ENSG00000129988|ENST00000217407|LBP MULTI-MSMS UPN46_class_I_Rep_3 1 487.7688903808594 2 487.768917 973.523281 0.24121 0.00011766 -0.2589 -0.00012629 -0.017691 -8.6291E-06 487.7687165745199 70.236 0.23618 70.236 70.086 70.322 0 38 26 2 0 0 0 0.36392 1 16150 16150 10.074 0.6908 1 115990 24125 2636 14915 14924 28363 28363 0.03546071414530161 LLNFSPGNL 9 Unmodified _LLNFSPGNL_ 0 0 0 ENSG00000129988|ENST00000217407|LBP ENSG00000129988|ENST00000217407|LBP ENSG00000129988|ENST00000217407|LBP MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 487.768917 973.523281 0.24121 0.00011766 -0.2589 -0.00012629 -0.017691 -8.6291E-06 487.7687165745199 70.236 0.23618 70.236 70.086 70.322 0 0 0 NaN 10.074 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 115990 24126 2636 14915 14924 0.03546071414530161 LLNHIEIFLSR 11 Unmodified _LLNHIEIFLSR_ 0 0 0 REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|168|3|anti-sense REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|168|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 451.93206787109375 3 452.266233 1353.77687 0.18517 8.3747E-05 1.0928 0.00049424 1.278 0.00057799 452.2666976972162 103.29 0.11976 107.07 106.99 107.11 3.7788 23 17 2 0 0 0 22.551 1 25399 25399 1.1098 0.48293 1 91125 + 24127 32650 14916 14925 28364 28364 0.11413298793991089 LLNQASIIPY 10 Unmodified _LLNQASIIPY_ 0 0 0 REV__L1PA5_dup4517|chr6:83896912-83901677:-|1.3753312037675869|0.0232464483041231|5.89|151.0|65|2|sense REV__L1PA5_dup4517|chr6:83896912-83901677:-|1.3753312037675869|0.0232464483041231|5.89|151.0|65|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 566.3236694335938 2 566.324057 1130.63356 0.29707 0.00016824 -0.051909 -2.9397E-05 0.24516 0.00013884 566.3238017984844 53.729 0.5327 57.313 57.092 57.625 3.5836 65 40 3 0 0 0 0.44806 1 11236 11236 15.847 4.2069 1 147930 + 24128 29762 14917 14926 28365 28365 0.07346871682921119 LLNSWMII 8 Unmodified _LLNSWMII_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|72|1|anti-sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|72|1|anti-sense MSMS UPN48_class_I_Rep_2 6 495.2789611816406 2 495.278063 988.541574 NaN NaN NaN NaN NaN NaN NaN 37.361 1 41.064 40.564 41.564 3.7021 0 0 0 0.40625 1 6386 6386 2.3027 0 1 + 24129 26437 14918 14927 28366 28366 0.0468449006488072 LLNVKNPHRK 10 Unmodified _LLNVKNPHRK_ 0 0 0 ENST00000396013.5_1_7:38268464-38269608:+|nuORF ENST00000396013.5_1_7:38268464-38269608:+|nuORF ENST00000396013.5_1_7:38268464-38269608:+|nuORF MSMS UPN47_class_I_Rep_2 3 406.5839538574219 3 406.919168 1217.73567 NaN NaN NaN NaN NaN NaN NaN 104.74 1 108.28 107.78 108.78 3.5327 0 0 0 0.53105 1 25430 25430 1.9064 0 1 24130 6558 14919 14928 28367 28367 0.13551582545142082 LLNVRLYIII 10 Unmodified _LLNVRLYIII_ 0 0 0 MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|23|2|anti-sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|23|2|anti-sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|23|2|anti-sense MSMS UPN46_class_I_Rep_3 1 615.4031372070312 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 77.904 1 77.904 77.404 78.404 0 0 0 0 0.53105 1 18228 18228 1.4819 0.28856 1 24131 16276 14920 14929 28368 28368 0.18548576293073893 LLPAKNEW 8 Unmodified _LLPAKNEW_ 0 0 0 REV__ENST00000427960.5_1_2:190332350-190333254:+|nuORF REV__ENST00000427960.5_1_2:190332350-190333254:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.7723388671875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 112.64 1 116.27 115.77 116.77 3.6321 0 0 0 0.40738 1 27338 27338 0.79363 0 1 + 24132 22275 14921 14930 28369 28369 0.04238375277122941 LLPALVMP 8 Unmodified _LLPALVMP_ 0 0 0 REV__L1ME1_dup29438|chr20:1487815-1488361:+|1.4835224092403925|0.0226050642465849|6.04|150.0|42|3|anti-sense REV__L1ME1_dup29438|chr20:1487815-1488361:+|1.4835224092403925|0.0226050642465849|6.04|150.0|42|3|anti-sense MSMS UPN47_class_I_Rep_1 2 427.2642822265625 2 427.264425 852.514297 NaN NaN NaN NaN NaN NaN NaN 86.271 1 89.886 89.386 90.386 3.6153 0 0 0 0.40738 1 21548 21548 0.79363 0 1 + 24133 27746 14922 14931 28370 28370 0.08214006524474371 LLPCKLRCF 9 Unmodified _LLPCKLRCF_ 0 0 0 REV__ENST00000544721.5_1_11:72396711-72399699:-|nuORF REV__ENST00000544721.5_1_11:72396711-72399699:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 546.8058471679688 2 546.806465 1091.59838 -0.19928 -0.00010897 -0.56316 -0.00030794 -0.76245 -0.00041691 546.8061010240849 29.854 0.73911 33.178 32.741 33.48 3.3235 92 62 2 0 0 0 0.46434 1 4794 4794 4.3292 0 1 78958 + 24134 22930 14923 14932 28371 28371 0.056242143497229335 LLPDSPLFW 9 Unmodified _LLPDSPLFW_ 0 0 0 REV__L1PA3_dup9636|chr15:61896238-61902274:+|2.335879981002092|0.0989047608543693|4.56|150.0|338|3|anti-sense REV__L1PA3_dup9636|chr15:61896238-61902274:+|2.335879981002092|0.0989047608543693|4.56|150.0|338|3|anti-sense MSMS UPN47_class_I_Rep_2 3 544.2954711914062 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 31.661 1 35.131 34.631 35.631 3.4691 0 0 0 0.39428 1 5388 5388 2.0598 0.21551 1 + 24135 29579 14924 14933 28372 28372 0.03515815108426068 LLPGLVSNS 9 Unmodified _LLPGLVSNS_ 0 0 0 AluJo_dup66664|chr17:64489479-64489775:+|1.456939088834208|0.3641676252043346|2.0|151.0|23|3|anti-sense AluJo_dup66664|chr17:64489479-64489775:+|1.456939088834208|0.3641676252043346|2.0|151.0|23|3|anti-sense AluJo_dup66664|chr17:64489479-64489775:+|1.456939088834208|0.3641676252043346|2.0|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.26263427734375 2 450.263468 898.512382 -0.55634 -0.0002505 -0.54224 -0.00024415 -1.0986 -0.00049465 450.2631020958072 36.726 0.9753 40.125 39.761 40.736 3.3988 141 73 3 0 0 0 0.42249 1 7047 7047 6.7232 0 1 359460 24136 122 14925 14934 28373 28373 0.05906669040234647 LLPIILIRLLD 11 Unmodified _LLPIILIRLLD_ 0 0 0 L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|255|3|anti-sense L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|255|3|anti-sense L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|255|3|anti-sense MSMS UPN48_class_I_Rep_3 7 646.4380493164062 2 646.439224 1290.86389 NaN NaN NaN NaN NaN NaN NaN 110.57 1 114.23 113.73 114.73 3.6654 0 0 0 0.38417 1 26236 26236 0.26902 0.26902 1 24137 9463 14926 14935 28374 28374 0.23009705015692816 LLPITIYIIAS 11 Unmodified _LLPITIYIIAS_ 0 0 0 REV__L1ME3G_dup3275|chr3:113752723-113753668:+|1.5602204035177678|0.0194586142189421|6.33|151.0|63|3|anti-sense REV__L1ME3G_dup3275|chr3:113752723-113753668:+|1.5602204035177678|0.0194586142189421|6.33|151.0|63|3|anti-sense MSMS UPN46_class_I_Rep_3 1 406.2484130859375 3 406.256564 1215.74786 NaN NaN NaN NaN NaN NaN NaN 100.92 1 100.92 100.42 101.42 0 0 0 0 0.38417 1 24616 24616 0.45452 0 1 + 24138 28195 14927 14936 28375 28375 0.14861761444990407 LLPLIKFM 8 Unmodified _LLPLIKFM_ 0 0 0 Charlie1a_dup560|chr2:26070829-26071405:+|1.5513959209886947|0.0676494451873502|4.52|151.0|9|1|sense Charlie1a_dup560|chr2:26070829-26071405:+|1.5513959209886947|0.0676494451873502|4.52|151.0|9|1|sense Charlie1a_dup560|chr2:26070829-26071405:+|1.5513959209886947|0.0676494451873502|4.52|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 487.8090515136719 2 487.808999 973.603446 NaN NaN NaN NaN NaN NaN NaN 93.884 1 97.505 97.005 98.005 3.6208 0 0 0 0.40738 1 22579 22579 0.79363 0 1 24139 487 14928 14937 28376 28376 0.11558841484009008 LLPLIKFM 8 Unmodified _LLPLIKFM_ 0 0 0 Charlie1a_dup560|chr2:26070829-26071405:+|1.5513959209886947|0.0676494451873502|4.52|151.0|9|1|sense Charlie1a_dup560|chr2:26070829-26071405:+|1.5513959209886947|0.0676494451873502|4.52|151.0|9|1|sense Charlie1a_dup560|chr2:26070829-26071405:+|1.5513959209886947|0.0676494451873502|4.52|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 487.8089599609375 2 487.808999 973.603446 NaN NaN NaN NaN NaN NaN NaN 93.603 1 97.494 96.994 97.994 3.8914 0 0 0 0.40738 1 22185 22185 0.79363 0 1 24140 487 14928 14937 28377 28377 0.11558841484009008 LLPLIVVVAPK 11 Unmodified _LLPLIVVVAPK_ 0 0 0 REV__MLT1D_dup4231|chr3:195426907-195427391:+|1.6354502106590707|0.0068325433210334|7.9|151.0|25|2|anti-sense REV__MLT1D_dup4231|chr3:195426907-195427391:+|1.6354502106590707|0.0068325433210334|7.9|151.0|25|2|anti-sense MSMS UPN46_class_I_Rep_3 1 581.4006958007812 2 581.40211 1160.78967 NaN NaN NaN NaN NaN NaN NaN 86.261 1 86.261 85.761 86.761 0 0 0 0 0.38417 1 20621 20621 1.3295 0.72803 1 + 24141 31684 14929 14938 28378 28378 0.21570361924159442 LLPLKILFH 9 Unmodified _LLPLKILFH_ 0 0 0 REV__L1ME1_dup2958|chr2:31845302-31845947:-|1.4313133841197614|0.0706687723855234|4.34|151.0|17|3|sense REV__L1ME1_dup2958|chr2:31845302-31845947:-|1.4313133841197614|0.0706687723855234|4.34|151.0|17|3|sense MSMS UPN48_class_I_Rep_1 5 547.36083984375 2 547.360245 1092.70594 NaN NaN NaN NaN NaN NaN NaN 111.1 1 114.73 114.23 115.23 3.6326 0 0 0 0.40038 1 26953 26953 0.6015 0 1 + 24142 27748 14930 14939 28379 28379 0.16329250547141783 LLPLKPNL 8 Unmodified _LLPLKPNL_ 0 0 0 ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF MSMS UPN46_class_I_Rep_3 1 454.3132019042969 2 454.302396 906.590239 NaN NaN NaN NaN NaN NaN NaN 25.548 1 25.548 25.048 26.048 0 0 0 0 0.40738 1 3522 3522 0.79363 0 1 24143 4426 14931 14940 28380 28380 0.1332072669625859 LLPLKPNL 8 Unmodified _LLPLKPNL_ 0 0 0 ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF MSMS UPN47_class_I_Rep_2 3 454.3138732910156 2 454.302396 906.590239 NaN NaN NaN NaN NaN NaN NaN 108.5 1 112.03 111.53 112.53 3.5333 0 0 0 0.40738 1 26325 26325 0.79363 0 1 24144 4426 14931 14940 28381 28381 0.1332072669625859 LLPLMNMVI 9 Unmodified _LLPLMNMVI_ 0 0 0 nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47 nc|ENSG00000108588|Q96A33-2|CCDC47 nc|ENSG00000108588|Q96A33-2|CCDC47 MULTI-SECPEP UPN48_class_I_Rep_3 7 521.7763671875 2 522.303224 1042.5919 0.46485 0.00024279 -1.1595 -0.00060563 -0.69469 -0.00036284 522.3024904132201 71.567 0.25951 75.093 75.024 75.283 3.5266 38 23 2 0 0 0 0.12281 1 16678 16678 4.3292 0.38484 1 173610 24145 1870 14932 14941 28382 28382 0.07230276398354363 LLPLMNMVI 9 Unmodified _LLPLMNMVI_ 0 0 0 nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47 nc|ENSG00000108588|Q96A33-2|CCDC47 nc|ENSG00000108588|Q96A33-2|CCDC47 MULTI-MATCH UPN48_class_I_Rep_1 5 2 522.303224 1042.5919 0.32312 0.00016877 -1.0854 -0.00056689 -0.76224 -0.00039812 522.3025873044418 71.626 0.32019 75.092 74.941 75.261 3.466 -0.0004354 2.3683E-05 NaN 4.3292 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 86985 24146 1870 14932 14941 0.07230276398354363 LLPLNGFGVG 10 Unmodified _LLPLNGFGVG_ 0 0 0 L1MB3_dup1517|chr1:246553698-246554286:+|1.1962798806040904|0.1569980480868128|2.93|150.0|36|2|anti-sense L1MB3_dup1517|chr1:246553698-246554286:+|1.1962798806040904|0.1569980480868128|2.93|150.0|36|2|anti-sense L1MB3_dup1517|chr1:246553698-246554286:+|1.1962798806040904|0.1569980480868128|2.93|150.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 493.78704833984375 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.3 1 112.97 112.47 113.47 3.6715 0 0 0 0.53105 1 26014 26014 7.2892 0 1 24147 10355 14933 14942 28383 28383 0.06630948311249085 LLPLPHSSW 9 Unmodified _LLPLPHSSW_ 0 0 0 ENST00000416928.6_1_2:177040400-177040706:-|nuORF ENST00000416928.6_1_2:177040400-177040706:-|nuORF ENST00000416928.6_1_2:177040400-177040706:-|nuORF MSMS UPN47_class_I_Rep_2 3 525.2910766601562 2 525.292559 1048.57057 NaN NaN NaN NaN NaN NaN NaN 30.137 1 33.619 33.119 34.119 3.4821 0 0 0 0.4007 1 4925 4925 0.52476 0.52476 1 24148 6656 14934 14943 28384 28384 0.04822350685526544 LLPLSAFL 8 Unmodified _LLPLSAFL_ 0 0 0 nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1 nc|ENSG00000133619|A5PL33-3|KRBA1 nc|ENSG00000133619|A5PL33-3|KRBA1 MSMS UPN48_class_I_Rep_2 6 437.2766418457031 2 437.275847 872.537141 NaN NaN NaN NaN NaN NaN NaN 64.301 1 67.776 67.276 68.276 3.4743 0 0 0 0.40604 1 14526 14526 2.5775 0 1 24149 2807 14935 14944 28385 28385 0.09577348913592232 LLPMFPIL 8 Unmodified _LLPMFPIL_ 0 0 0 REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4 REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4 MULTI-SECPEP UPN47_class_I_Rep_2 3 471.7965087890625 2 472.2879 942.561247 0.21799 0.00010295 0.0052308 2.4705E-06 0.22322 0.00010542 472.2878981310196 87.977 0.30533 91.424 91.244 91.55 3.4471 45 36 2 0 0 0 0.72333 1 21873 21873 2.8892 0 1 232320 + 24150 18021 14936 14945 28386 28386 0.0876686607564352 LLPNLKLK 8 Unmodified _LLPNLKLK_ 0 0 0 REV__L1PA5_dup8074|chr11:14575266-14577139:-|2.177282415733678|0.1975064607823219|3.46|151.0|1|1|sense REV__L1PA5_dup8074|chr11:14575266-14577139:-|2.177282415733678|0.1975064607823219|3.46|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 469.8222351074219 2 469.823495 937.632438 NaN NaN NaN NaN NaN NaN NaN 93.86 1 93.86 93.36 94.36 0 0 0 0 0.40746 1 22759 22759 0.69038 0 1 + 24151 29798 14937 14946 28387 28387 0.16112702104635446 LLPPAAEGRR 10 Unmodified _LLPPAAEGRR_ 0 0 0 REV__ENST00000554503.5_1_12:57628981-57629323:-|nuORF REV__ENST00000554503.5_1_12:57628981-57629323:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.31964 1078.62473 NaN NaN NaN NaN NaN NaN NaN 42.212 1 42.212 41.712 42.712 0 0 0 0 0.53105 1 8340 8340 1.1933 0 1 + 24152 22982 14938 14947 28388 28388 0.0885594283708997 LLPPKLLLRV 10 Unmodified _LLPPKLLLRV_ 0 0 0 REV__ENST00000489955.1_1_2:165551047-165551113:-|nuORF REV__ENST00000489955.1_1_2:165551047-165551113:-|nuORF MSMS UPN48_class_I_Rep_1 5 581.406005859375 2 581.407727 1160.8009 NaN NaN NaN NaN NaN NaN NaN 108.18 1 111.82 111.32 112.32 3.6313 0 0 0 0.53105 1 26156 26156 0.40072 0 1 + 24153 22624 14939 14948 28389 28389 0.22693184018294232 LLPPPFVM 8 Unmodified _LLPPPFVM_ 0 0 0 REV__L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|100|1|anti-sense REV__L1M8_dup749|chr6:161062056-161064105:-|2.161641385397274|0.1292869302428234|4.06|151.0|100|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2642822265625 2 457.264425 912.514297 -0.15313 -7.0019E-05 0.012065 5.5171E-06 -0.14106 -6.4502E-05 457.2643294104242 73.093 1.9641 76.32 75.19 77.155 3.2271 308 175 3 0 0 0 0.82752 1 17790 17790 0.79363 0 1 325030 + 24154 24747 14940 14949 28390 28390 0.05454006524496435 LLPQQNTLNVF 11 Unmodified _LLPQQNTLNVF_ 0 0 0 REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|80|1|anti-sense REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|80|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 643.8590698242188 2 643.858795 1285.70304 0.68456 0.00044076 0.11721 7.5468E-05 0.80178 0.00051623 643.858385682062 62.79 0.4378 62.79 62.624 63.061 0 55 41 2 0 0 0 0.40526 1 14074 14074 10.151 3.9448 1 232150 + 24155 32560 14941 14950 28391 28391 0.07161330631652163 LLPRIQVKARK 11 Unmodified _LLPRIQVKARK_ 0 0 0 REV__THE1D-int_dup1999|chr13:32373536-32374878:-|1.8616751051864333|0.0841541111726374|4.47|151.0|10|1|sense REV__THE1D-int_dup1999|chr13:32373536-32374878:-|1.8616751051864333|0.0841541111726374|4.47|151.0|10|1|sense MSMS UPN48_class_I_Rep_3 7 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.055 1 75.582 75.082 76.082 3.5266 0 0 0 0.38417 1 16772 16772 0.50596 0 1 + 24156 32306 14942 14951 28392 28392 0.22417277055819795 LLPRIQYF 8 Unmodified _LLPRIQYF_ 0 0 0 REV__nc|ENSG00000213859|Q693B1|KCTD11 REV__nc|ENSG00000213859|Q693B1|KCTD11 MULTI-MSMS UPN48_class_I_Rep_1 5 525.3133544921875 2 525.310752 1048.60695 0.33108 0.00017392 1.8474 0.00097045 2.1785 0.0011444 525.3118792338436 75.072 0.48578 78.562 78.147 78.632 3.49 81 47 3 0 0 0 0.82752 1 17706 17706 13.508 0 1 372900 + 24157 21252 14943 14952 28393 28393 0.08459227582216045 LLPRKKAL 8 Unmodified _LLPRKKAL_ 0 0 0 ENST00000528196.5_2_11:8772194-8795704:-|nuORF;LOR1b_dup965|chr16:67490579-67491019:+|1.1769094139100964|0.1364342176915396|3.11|151.0|29|3|anti-sense ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF MSMS UPN48_class_I_Rep_2 6 469.8302307128906 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.644 1 98.42 97.92 98.92 3.7761 0 0 0 0.40738 1 22500 22500 0.79363 0 1 24158 7276 14944 14953 28394 28394 0.17235524198792973 LLPRKKAL 8 Unmodified _LLPRKKAL_ 0 0 0 ENST00000528196.5_2_11:8772194-8795704:-|nuORF;LOR1b_dup965|chr16:67490579-67491019:+|1.1769094139100964|0.1364342176915396|3.11|151.0|29|3|anti-sense ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.8304138183594 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 90.615 1 94.462 93.962 94.962 3.847 0 0 0 0.40604 1 21498 21498 2.5775 0 1 24159 7276 14944 14953 28395 28395 0.17235524198792973 LLPRKKAL 8 Unmodified _LLPRKKAL_ 0 0 0 ENST00000528196.5_2_11:8772194-8795704:-|nuORF;LOR1b_dup965|chr16:67490579-67491019:+|1.1769094139100964|0.1364342176915396|3.11|151.0|29|3|anti-sense ENST00000528196.5_2_11:8772194-8795704:-|nuORF ENST00000528196.5_2_11:8772194-8795704:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.8304443359375 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.515 1 98.417 97.917 98.917 3.9016 0 0 0 0.40604 1 22397 22397 2.5775 0 1 24160 7276 14944 14953 28396 28396 0.17235524198792973 LLPSPTPCLL 10 Unmodified _LLPSPTPCLL_ 0 0 0 L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|84|3|sense L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|84|3|sense L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|84|3|sense MSMS UPN48_class_I_Rep_2 6 527.3058471679688 2 527.304278 1052.594 NaN NaN NaN NaN NaN NaN NaN 98.1 1 101.88 101.38 102.38 3.779 0 0 0 0.53105 1 23305 23305 4.3292 0.73274 1 24161 9769 14945 14954 28397 28397 0.06981028407813028 LLPSYYDAD 9 Unmodified _LLPSYYDAD_ 0 0 0 REV__L1MC_dup3266|chr7:37086925-37087636:-|1.7278373514929335|0.018621076303561|6.54|151.0|6|1|sense REV__L1MC_dup3266|chr7:37086925-37087636:-|1.7278373514929335|0.018621076303561|6.54|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.7485961914062 2 528.747847 1055.48114 0.36589 0.00019346 0.482 0.00025486 0.84789 0.00044832 528.7481345536712 79.078 1.0914 82.524 82.137 83.229 3.4456 192 102 3 0 0 0 0.17468 4 19750 19667;19750;19788;19826 23.148 2.2772 1 241630 + 24162 26464 14946 14955 28398;28399;28400;28401 28399 -0.04437948784516266 LLPVDFIHC 9 Unmodified _LLPVDFIHC_ 0 0 0 L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|70|3|anti-sense L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|70|3|anti-sense L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|70|3|anti-sense MSMS UPN48_class_I_Rep_2 6 528.7810668945312 2 528.78097 1055.54739 NaN NaN NaN NaN NaN NaN NaN 31.846 1 35.487 34.987 35.987 3.641 0 0 0 0.39428 1 4844 4844 2.0598 0 1 24163 13395 14947 14956 28402 28402 0.021835885765540297 LLPWKHFN 8 Unmodified _LLPWKHFN_ 0 0 0 REV__L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|166|3|anti-sense REV__L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|166|3|anti-sense MSMS UPN48_class_I_Rep_2 6 527.7958984375 2 527.795269 1053.57599 NaN NaN NaN NaN NaN NaN NaN 114.52 1 118.18 117.68 118.68 3.6616 0 0 0 0.40738 1 27374 27374 0.79363 0 1 + 24164 25615 14948 14957 28403 28403 0.05134074267994038 LLPYYGKTY 9 Unmodified _LLPYYGKTY_ 0 0 0 REV__L1MC5a_dup2815|chr3:11548514-11549046:-|1.1858581670150783|0.1386590330256157|3.1|151.0|3|1|sense REV__L1MC5a_dup2815|chr3:11548514-11549046:-|1.1858581670150783|0.1386590330256157|3.1|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 559.3114624023438 2 559.30005 1116.58555 NaN NaN NaN NaN NaN NaN NaN 53.839 1 57.42 56.92 57.92 3.5817 0 0 0 0.24828 1 11322 11322 13.508 0.97634 1 + 24165 27151 14949 14958 28404 28404 0.03191797762860915 LLQDSLLL 8 Unmodified _LLQDSLLL_ 0 0 0 REV__nc|ENSG00000196378|Q8IZ26|ZNF34 REV__nc|ENSG00000196378|Q8IZ26|ZNF34 MULTI-SECPEP UPN48_class_I_Rep_2 6 457.2950134277344 2 457.781493 913.548434 0.27743 0.000127 0.052179 2.3886E-05 0.32961 0.00015089 457.78143986996156 57.223 0.65543 60.737 60.407 61.063 3.5142 84 56 2 0 0 0 0.72333 1 12330 12330 30.225 5.5509 1 217300 + 24166 32090 14950 14959 28405 28405 0.08820126217108282 LLQEKSSL 8 Unmodified _LLQEKSSL_ 0 0 0 ENST00000540597.5_1_19:55501708-55512263:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2 ENST00000540597.5_1_19:55501708-55512263:+|nuORF ENST00000540597.5_1_19:55501708-55512263:+|nuORF MSMS UPN47_class_I_Rep_3 4 459.269287109375 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 41.598 1 44.835 44.335 45.335 3.2372 0 0 0 0.40404 1 8453 8453 5.2307 0 1 24167 810 14951 14960 28406 28406 0.06134651694674176 LLQFPYYLL 9 Unmodified _LLQFPYYLL_ 0 0 0 L1M3_dup649|chr2:97500001-97500838:+|1.1065244987597704|0.1478829413038724|2.9|151.0|50|3|anti-sense L1M3_dup649|chr2:97500001-97500838:+|1.1065244987597704|0.1478829413038724|2.9|151.0|50|3|anti-sense L1M3_dup649|chr2:97500001-97500838:+|1.1065244987597704|0.1478829413038724|2.9|151.0|50|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.8572387695312 2 585.333893 1168.65323 NaN NaN NaN NaN NaN NaN NaN 86.952 1 86.952 86.452 87.452 0 0 0 0 0.36505 1 20810 20810 7.2892 0 1 24168 8775 14952 14961 28407 28407 0.07565247693651145 LLQGFKKCL 9 Unmodified _LLQGFKKCL_ 0 0 0 ENSG00000141527|ENST00000648509|CARD14;ENST00000575500.5_2_17:78178032-78182141:+|nuORF ENSG00000141527|ENST00000648509|CARD14 ENSG00000141527|ENST00000648509|CARD14 MULTI-MSMS UPN48_class_I_Rep_1 5 525.3142700195312 2 525.312438 1048.61032 0.33108 0.00017392 -1.361 -0.00071495 -1.0299 -0.00054104 525.3118792338436 75.072 0.48578 78.562 78.147 78.632 3.49 81 47 3 0 0 0 0.46434 1 17667 17667 4.3292 0 1 372900 24169 3224 14953 14962 28408 28408 0.08796154364586073 LLQGQKAKQC 10 Unmodified _LLQGQKAKQC_ 0 0 0 L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|85|3|sense L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|85|3|sense L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|85|3|sense MSMS UPN48_class_I_Rep_1 5 558.812744140625 2 558.813333 1115.61211 NaN NaN NaN NaN NaN NaN NaN 76.917 1 80.428 79.928 80.928 3.5102 0 0 0 0.53105 1 18283 18283 1.4819 0.68827 1 24170 14399 14954 14963 28409 28409 0.05893163382529565 LLQHLVFY 8 Unmodified _LLQHLVFY_ 0 0 0 L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|82|2|anti-sense L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|82|2|anti-sense L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|82|2|anti-sense MSMS UPN48_class_I_Rep_2 6 516.7982177734375 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 33.641 1 37.302 36.802 37.802 3.6607 0 0 0 0.40604 1 5334 5334 2.5775 0 1 24171 11931 14955 14964 28410 28410 0.06587538690905603 LLQIKELE 8 Unmodified _LLQIKELE_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS UPN47_class_I_Rep_3 4 493.3002014160156 2 493.30005 984.585547 0.28744 0.00014179 -1.5002 -0.00074005 -1.2128 -0.00059826 493.2992907669335 50.817 0.66128 54.033 53.656 54.317 3.2163 54 34 2 0 0 0 0.82752 1 11240 11240 37.974 0 1 92570 + 24172 20657 14956 14965 28411 28411 0.09263797762844206 LLQKTPGF 8 Unmodified _LLQKTPGF_ 0 0 0 L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|132|3|sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|132|3|sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|132|3|sense MSMS UPN46_class_I_Rep_3 1 452.2691955566406 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 62.423 1 62.423 61.923 62.923 0 0 0 0 0.40581 1 13953 13953 2.8892 0 1 24173 15240 14957 14966 28412 28412 0.06739276765483737 LLQKTVNEY 9 Unmodified _LLQKTVNEY_ 0 0 0 L1MC4_dup3062|chr2:127804508-127804979:+|2.355912279661424|0.0212941079335845|6.79|151.0|11|2|sense L1MC4_dup3062|chr2:127804508-127804979:+|2.355912279661424|0.0212941079335845|6.79|151.0|11|2|sense L1MC4_dup3062|chr2:127804508-127804979:+|2.355912279661424|0.0212941079335845|6.79|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 554.305419921875 2 554.305864 1106.59717 NaN NaN NaN NaN NaN NaN NaN 56.194 1 59.366 58.866 59.866 3.1721 0 0 0 0.37476 1 12900 12900 6.7232 0 1 24174 11486 14958 14967 28413 28413 0.04813994786195508 LLQLETLL 8 Unmodified _LLQLETLL_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 75.799 1 79.12 78.62 79.62 3.3216 0 0 0 0.40581 1 18735 18735 2.8892 0 1 + 24175 18163 14959 14968 28414 28414 0.10660699251184269 LLQLITPAKSQ 11 Unmodified _LLQLITPAKSQ_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|40|2|sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|40|2|sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 404.9176025390625 3 404.583451 1210.72852 -0.12773 -5.1676E-05 -0.33379 -0.00013505 -0.46152 -0.00018672 404.58331027379523 52.015 0.85638 55.537 54.86 55.717 3.5227 121 82 2 0 0 0 0.66059 1 10721 10721 0.92553 0.080592 1 504840 24176 13860 14960 14969 28415 28415 0.13158805154080255 LLQLNRVEER 10 Unmodified _LLQLNRVEER_ 0 0 0 REV__ENST00000445741.5_1_8:119252188-119391931:-|nuORF REV__ENST00000445741.5_1_8:119252188-119391931:-|nuORF MSMS UPN48_class_I_Rep_1 5 635.3704833984375 2 635.367318 1268.72008 NaN NaN NaN NaN NaN NaN NaN 97.624 1 101.23 100.73 101.73 3.6088 0 0 0 0.53105 1 23549 23549 1.4819 0 1 + 24177 20622 14961 14970 28416 28416 0.096472512374703 LLQLPVPGQ 9 Unmodified _LLQLPVPGQ_ 0 0 0 REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 482.8463134765625 2 482.794935 963.575317 0.27405 0.00013231 1.5228 0.00073521 1.7969 0.00086752 482.7956478584234 114.2 0.032112 114.2 114.18 114.21 0 4 2 2 0 0 0 0.12444 1 28222 28222 0.52476 0.066424 1 50110 + 24178 19336 14962 14971 28417 28417 0.09207234828284072 LLQLPVPGQ 9 Unmodified _LLQLPVPGQ_ 0 0 0 REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 482.794935 963.575317 0.25141 0.00012138 1.2576 0.00060718 1.509 0.00072856 482.7954452222003 110.47 0.12175 114.06 114.02 114.14 3.5835 -0.047996 -1.0854E-05 NaN 0.52476 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 560910 + 24179 19336 14962 14971 0.09207234828284072 LLQLPVPGQ 9 Unmodified _LLQLPVPGQ_ 0 0 0 REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 482.794935 963.575317 0.39455 0.00019049 1.1421 0.00055142 1.5367 0.00074191 482.79546635259555 110.53 0.33813 114.06 113.94 114.27 3.5271 -0.045284 -0.00012237 NaN 0.52476 78 44 2 NaN NaN NaN NaN 0 NaN NaN 0 175340 + 24180 19336 14962 14971 0.09207234828284072 LLQLPVPGQ 9 Unmodified _LLQLPVPGQ_ 0 0 0 REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 482.794935 963.575317 0.1754 8.468E-05 1.3054 0.00063026 1.4808 0.00071494 482.7954565050951 110.52 0.30931 114.05 113.96 114.27 3.529 -0.05491 3.5304E-05 NaN 0.52476 78 40 3 NaN NaN NaN NaN 0 NaN NaN 0 174260 + 24181 19336 14962 14971 0.09207234828284072 LLQLPVPGQ 9 Unmodified _LLQLPVPGQ_ 0 0 0 REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 482.794935 963.575317 0.12504 6.0369E-05 1.4866 0.00071773 1.6116 0.00077809 482.7957127385114 110.47 0.1701 114.11 113.98 114.15 3.6326 0.002828 0.00021024 NaN 0.52476 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 97674 + 24182 19336 14962 14971 0.09207234828284072 LLQLPVPGQ 9 Unmodified _LLQLPVPGQ_ 0 0 0 REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF REV__ENST00000563604.1_1_15:43017617-43017824:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 482.794935 963.575317 0.24196 0.00011682 1.1117 0.00053675 1.3537 0.00065356 482.79532278335023 110.49 0.31966 114.16 114.1 114.42 3.669 0.052689 -0.00015172 NaN 0.52476 60 40 2 NaN NaN NaN NaN 0 NaN NaN 0 72710 + 24183 19336 14962 14971 0.09207234828284072 LLQLQSKAA 9 Unmodified _LLQLQSKAA_ 0 0 0 L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|169|3|anti-sense L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|169|3|anti-sense L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|169|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.2978210449219 2 486.297842 970.581131 0.27048 0.00013153 -0.1756 -8.5394E-05 0.094883 4.6141E-05 486.29771762227364 50.882 0.57569 54.22 53.862 54.438 3.3386 50 31 2 0 0 0 0.24936 2 11204 11204;11237 17.113 3.2068 1 108470 24184 8727 14963 14972 28418;28419 28418 0.09466333339935318 LLQLQSKAA 9 Unmodified _LLQLQSKAA_ 0 0 0 L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|169|3|anti-sense L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|169|3|anti-sense L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|169|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.2975769042969 2 486.297842 970.581131 0.23997 0.0001167 -0.57806 -0.00028111 -0.33809 -0.00016441 486.2975313415004 50.922 0.63685 54.138 53.816 54.453 3.2163 43 31 2 0 0 0 0.37599 2 11284 11284;11362 9.3831 0 1 111240 24185 8727 14963 14972 28420;28421 28420 0.09466333339935318 LLQNDAYNDC 10 Unmodified _LLQNDAYNDC_ 0 0 0 ENSG00000153975|ENST00000368576|ZUP1 ENSG00000153975|ENST00000368576|ZUP1 ENSG00000153975|ENST00000368576|ZUP1 MSMS UPN47_class_I_Rep_3 4 584.7296142578125 2 584.750595 1167.48664 NaN NaN NaN NaN NaN NaN NaN 114.51 1 117.99 117.49 118.49 3.4802 0 0 0 0.53105 1 28120 28120 3.5965 1.5367 1 24186 3656 14964 14973 28422 28422 -0.09040593264353447 LLQNTRLE 8 Unmodified _LLQNTRLE_ 0 0 0 L1M8_dup31|chr1:45646225-45646560:-|1.055293651604552|0.1246756924823377|3.08|151.0|10|2|sense L1M8_dup31|chr1:45646225-45646560:-|1.055293651604552|0.1246756924823377|3.08|151.0|10|2|sense L1M8_dup31|chr1:45646225-45646560:-|1.055293651604552|0.1246756924823377|3.08|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.7744445800781 2 493.785099 985.555644 0.27573 0.00013615 0.028973 1.4307E-05 0.30471 0.00015046 493.784960047103 50.215 0.56124 53.558 53.351 53.912 3.3431 51 27 3 0 0 0 0.82752 1 11103 11103 13.508 0.97634 1 115020 24187 9245 14965 14974 28423 28423 0.06228858817519267 LLQPIEDVDS 10 Unmodified _LLQPIEDVDS_ 0 0 0 REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|172|3|anti-sense REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|172|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.74560546875 2 564.792786 1127.57102 NaN NaN NaN NaN NaN NaN NaN 32.93 1 36.385 35.885 36.885 3.4547 0 0 0 0.53105 1 5768 5768 1.6526 0 1 + 24188 24166 14966 14975 28424 28424 0.012336808240434038 LLQPRPKAN 9 Unmodified _LLQPRPKAN_ 0 0 0 REV__ENSG00000101126.18,ADNP,chr20,-,I2.1,50918782,50928650|95|10.82|1|intron REV__ENSG00000101126.18,ADNP,chr20,-,I2.1,50918782,50928650|95|10.82|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 518.8154907226562 2 518.816733 1035.61891 0.32601 0.00016914 -1.2101 -0.0006278 -0.88405 -0.00045866 518.815965459761 107.99 0.67242 107.99 107.9 108.57 0 108 64 2 0 0 0 0.41259 1 26441 26441 7.2892 1.0834 1 84087000 + 24189 18148 14967 14976 28425 28425 0.10252844325418664 LLQPYKPY 8 Unmodified _LLQPYKPY_ 0 0 0 MSTA_dup13328|chr10:119064329-119064704:+|1.267073615387453|0.0882062588222133|3.84|151.0|3|1|sense MSTA_dup13328|chr10:119064329-119064704:+|1.267073615387453|0.0882062588222133|3.84|151.0|3|1|sense MSTA_dup13328|chr10:119064329-119064704:+|1.267073615387453|0.0882062588222133|3.84|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 511.2879638671875 2 511.289485 1020.56442 NaN NaN NaN NaN NaN NaN NaN 31.056 1 31.056 30.556 31.556 0 0 0 0 0.33946 1 5140 5140 24.674 0 1 24190 16525 14968 14977 28426 28426 0.0549583245398253 LLQQQFVL 8 Unmodified _LLQQQFVL_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MULTI-MSMS UPN47_class_I_Rep_2 3 494.79498291015625 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 2 6805 6805;6815 8.5933 0.81161 1 349140 + 24191 18900 14969 14978 28427;28428 28427 0.08103234828286077 LLQQQQAVP 9 Unmodified _LLQQQQAVP_ 0 0 0 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 MSMS UPN47_class_I_Rep_2 3 512.7924194335938 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 52.841 1 56.168 55.668 56.668 3.3266 0 0 0 0.34056 1 11816 11816 8.5933 0 1 24192 3447 14970 14979 28429 28429 0.0604514533456495 LLQQQQLFL 9 Unmodified _LLQQQQLFL_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MULTI-MSMS UPN47_class_I_Rep_1 2 565.8322143554688 2 565.832049 1129.64954 0.36371 0.0002058 -0.24834 -0.00014052 0.11537 6.5282E-05 565.8318532243346 71.985 0.68886 75.36 75.082 75.771 3.3751 85 52 2 0 0 0 0.066633 4 17604 17528;17567;17604;17649 41.84 0 1 209690 24193 5150;3203 14971 14980 28430;28431;28432;28433 28432 0.089905779198034 LLQQQQLFL 9 Unmodified _LLQQQQLFL_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MSMS UPN47_class_I_Rep_2 3 565.83154296875 2 565.832049 1129.64954 NaN NaN NaN NaN NaN NaN NaN 72.043 1 75.333 74.833 75.833 3.2899 0 0 0 0.072484 1 17641 17641 30.637 0 1 24194 5150;3203 14971 14980 28434 28434 0.089905779198034 LLQQQQLFL 9 Unmodified _LLQQQQLFL_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MSMS UPN47_class_I_Rep_2 3 565.8317260742188 2 565.832049 1129.64954 NaN NaN NaN NaN NaN NaN NaN 72.165 1 75.455 74.955 75.955 3.2899 0 0 0 0.036836 1 17676 17676 41.84 0 1 24195 5150;3203 14971 14980 28435 28435 0.089905779198034 LLQQQQLFL 9 Unmodified _LLQQQQLFL_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MSMS UPN47_class_I_Rep_2 3 565.83154296875 2 565.832049 1129.64954 NaN NaN NaN NaN NaN NaN NaN 72.307 1 75.604 75.104 76.104 3.2971 0 0 0 0.026253 1 17718 17718 49.933 0 1 24196 5150;3203 14971 14980 28436 28436 0.089905779198034 LLQQQQLFL 9 Unmodified _LLQQQQLFL_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;nc|ENSG00000141052|Q8IZQ8-2|MYOCD nc|ENSG00000186260|Q9ULH7-4|MRTFB;ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MULTI-MSMS UPN47_class_I_Rep_3 4 565.832275390625 2 565.832049 1129.64954 0.45062 0.00025498 -0.28188 -0.0001595 0.16874 9.5481E-05 565.8318198338345 72.194 0.70294 75.413 75.131 75.834 3.2188 123 60 3 0 0 0 0.047711 5 17750 17701;17711;17750;17791;17822 49.933 0 1 119500 24197 5150;3203 14971 14980 28437;28438;28439;28440;28441 28439 0.089905779198034 LLQQVLNRL 9 Unmodified _LLQQVLNRL_ 0 0 0 MER89_dup554|chr6:159722662-159723198:+|1.6206167266213825|0.2753620403013689|2.56|151.0|7|1|sense MER89_dup554|chr6:159722662-159723198:+|1.6206167266213825|0.2753620403013689|2.56|151.0|7|1|sense MER89_dup554|chr6:159722662-159723198:+|1.6206167266213825|0.2753620403013689|2.56|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.845947265625 2 548.84549 1095.67643 0.31494 0.00017286 0.13785 7.5659E-05 0.4528 0.00024851 548.8454877369472 51.145 1.0251 54.756 54.254 55.279 3.6105 176 74 3 0 0 0 0.41259 1 10390 10390 7.2892 0 1 496940 24198 16225 14972 14981 28442 28442 0.1324168653097786 LLQRGTLL 8 Unmodified _LLQRGTLL_ 0 0 0 REV__L1PA7_dup10186|chr12:9685146-9686305:-|2.957368896738094|0.4329627021291604|2.77|151.0|9|1|sense REV__L1PA7_dup10186|chr12:9685146-9686305:-|2.957368896738094|0.4329627021291604|2.77|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.29510498046875 2 457.295102 912.575651 0.13414 6.1339E-05 -0.13486 -6.1673E-05 -0.00072921 -3.3346E-07 457.29502352287494 57.359 0.87638 60.853 60.469 61.345 3.4942 127 75 3 0 0 0 0.82752 1 12389 12389 23.148 1.4018 1 494010 + 24199 29968 14973 14982 28443 28443 0.11586654548136721 LLQRGTLL 8 Unmodified _LLQRGTLL_ 0 0 0 REV__L1PA7_dup10186|chr12:9685146-9686305:-|2.957368896738094|0.4329627021291604|2.77|151.0|9|1|sense REV__L1PA7_dup10186|chr12:9685146-9686305:-|2.957368896738094|0.4329627021291604|2.77|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.29510498046875 2 457.295102 912.575651 0.27521 0.00012585 -0.18623 -8.5161E-05 0.088982 4.0691E-05 457.2949523842663 57.297 0.80341 60.811 60.451 61.254 3.5142 151 66 3 0 0 0 0.82752 3 12366 12330;12366;12403 30.225 1.738 1 655170 + 24200 29968 14973 14982 28444;28445;28446 28445 0.11586654548136721 LLQRGTLL 8 Unmodified _LLQRGTLL_ 0 0 0 REV__L1PA7_dup10186|chr12:9685146-9686305:-|2.957368896738094|0.4329627021291604|2.77|151.0|9|1|sense REV__L1PA7_dup10186|chr12:9685146-9686305:-|2.957368896738094|0.4329627021291604|2.77|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.2953796386719 2 457.295102 912.575651 0.09829 4.4948E-05 -0.015247 -6.9722E-06 0.083043 3.7975E-05 457.29502976119363 57.101 0.81625 60.644 60.356 61.172 3.5427 145 78 2 0 0 0 0.82752 1 12225 12225 16.942 1.0951 1 524520 + 24201 29968 14973 14982 28447 28447 0.11586654548136721 LLQRPRELR 9 Unmodified _LLQRPRELR_ 0 0 0 ENST00000368605.2_1_6:116783229-116784525:+|nuORF ENST00000368605.2_1_6:116783229-116784525:+|nuORF ENST00000368605.2_1_6:116783229-116784525:+|nuORF MSMS UPN48_class_I_Rep_3 7 590.866455078125 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 97.353 1 101.26 100.76 101.76 3.9084 0 0 0 0.39598 1 23076 23076 1.6526 0 1 24202 6367 14974 14983 28448 28448 0.13735296028107769 LLQYIWYS 8 Unmodified _LLQYIWYS_ 0 0 0 REV__L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|93|3|anti-sense REV__L1MEd_dup3921|chr3:43334892-43336186:-|2.24234262521697|0.1444390864001817|3.96|151.0|93|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 543.1174926757812 2 543.286943 1084.55933 0.312 0.00016951 -0.52384 -0.0002846 -0.21184 -0.00011509 543.286506859086 51.647 0.68632 51.647 51.317 52.003 0 118 78 2 0 0 0 0.82752 1 10901 10901 2.3027 0 1 340870 + 24203 28575 14975 14984 28449 28449 0.02043528591343602 LLRAALVL 8 Unmodified _LLRAALVL_ 0 0 0 ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 434.8023681640625 2 434.802563 867.590573 0.11327 4.9249E-05 -0.21233 -9.2323E-05 -0.099066 -4.3074E-05 434.80241700951984 60.796 0.45362 64.27 63.949 64.403 3.4737 57 33 2 0 0 0 0.82752 2 13441 13441;13481 34.187 0 1 322860 24204 7456 14976 14985 28450;28451 28450 0.15148146416106556 LLRAALVL 8 Unmodified _LLRAALVL_ 0 0 0 ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 434.8019714355469 2 434.802563 867.590573 0.11025 4.7937E-05 -0.57387 -0.00024952 -0.46362 -0.00020158 434.80219847207724 60.962 0.40928 64.436 64.351 64.76 3.4737 55 35 2 0 0 0 0.82752 2 13580 13528;13580 26.341 0 1 168380 24205 7456 14976 14985 28452;28453 28453 0.15148146416106556 LLRAALVL 8 Unmodified _LLRAALVL_ 0 0 0 ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 434.8025817871094 2 434.802563 867.590573 0.16903 7.3495E-05 -0.38257 -0.00016634 -0.21354 -9.2849E-05 434.8023033605151 60.637 0.35241 64.116 63.891 64.244 3.4785 52 32 2 0 0 0 0.82752 1 13398 13398 13.508 0 1 280620 24206 7456 14976 14985 28454 28454 0.15148146416106556 LLRAALVL 8 Unmodified _LLRAALVL_ 0 0 0 ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 434.802490234375 2 434.802563 867.590573 0.16603 7.2189E-05 -0.53247 -0.00023152 -0.36644 -0.00015933 434.8022600022535 60.846 0.45353 64.325 64.164 64.618 3.4785 65 41 2 0 0 0 0.82752 2 13440 13440;13476 26.341 0 1 277500 24207 7456 14976 14985 28455;28456 28455 0.15148146416106556 LLRAALVL 8 Unmodified _LLRAALVL_ 0 0 0 ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF ENST00000560869.5_2_14:103601703-103601949:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 434.8022766113281 2 434.802563 867.590573 0.13024 5.6629E-05 -0.39587 -0.00017213 -0.26563 -0.0001155 434.80233938287574 60.545 0.84917 64.058 63.787 64.636 3.5128 101 80 2 0 0 0 0.82752 4 13398 13262;13300;13340;13398 34.187 0 1 264120 24208 7456 14976 14985 28457;28458;28459;28460 28460 0.15148146416106556 LLRAFYVPFL 10 Unmodified _LLRAFYVPFL_ 0 0 0 nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 nc|ENSG00000086848|Q9H6U8-2|ALG9 MSMS UPN48_class_I_Rep_2 6 619.8703002929688 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 87.713 1 91.441 90.941 91.941 3.7279 0 0 0 0.53105 1 20873 20873 1.6526 0 1 24209 1288 14977 14986 28461 28461 0.11296331713219843 LLRAILLM 8 Unmodified _LLRAILLM_ 0 0 0 REV__L1MCc_dup268|chr2:24147231-24148542:-|1.2572150966064355|0.0937574474860332|3.75|150.0|64|1|anti-sense REV__L1MCc_dup268|chr2:24147231-24148542:-|1.2572150966064355|0.0937574474860332|3.75|150.0|64|1|anti-sense MSMS UPN48_class_I_Rep_3 7 471.79638671875 2 471.812073 941.609594 NaN NaN NaN NaN NaN NaN NaN 112.65 1 116.31 115.81 116.81 3.6614 0 0 0 0.40746 1 26768 26768 0.69038 0 1 + 24210 27247 14978 14987 28462 28462 0.13645359715542327 LLRALTHK 8 Unmodified _LLRALTHK_ 0 0 0 L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|35|2|sense L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|35|2|sense L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|35|2|sense MSMS UPN47_class_I_Rep_1 2 476.32073974609375 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 61.444 1 64.826 64.326 65.326 3.3815 0 0 0 0.39624 1 14409 14409 9.3474 0 1 24211 11782 14979 14988 28463 28463 0.12525763159317194 LLRGRVLF 8 Unmodified _LLRGRVLF_ 0 0 0 HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|148|3|sense;HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|43|1|sense;HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|16|3|sense;HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|74|1|sense;HERV9-int_dup276|chr12:29169166-29169938:-|1.4435976733780025|0.0906116110949368|3.99|151.0|15|3|sense;HERV9-int_dup115|chr7:36500001-36501359:-|1.980681188347708|0.0505947907580903|5.29|150.0|9|1|sense HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|148|3|sense HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|148|3|sense MSMS UPN48_class_I_Rep_2 6 487.3175964355469 2 487.318912 972.62327 NaN NaN NaN NaN NaN NaN NaN 108.24 1 111.92 111.42 112.42 3.6746 0 0 0 0.40604 1 25649 25649 2.5775 0 1 24212 8063 14980 14989 28464 28464 0.13586353538971707 LLRHRKAQLLL 11 Unmodified _LLRHRKAQLLL_ 0 0 0 ENSG00000158715|ENST00000367145|SLC45A3 ENSG00000158715|ENST00000367145|SLC45A3 ENSG00000158715|ENST00000367145|SLC45A3 MSMS UPN48_class_I_Rep_1 5 454.3135681152344 3 454.301501 1359.88267 NaN NaN NaN NaN NaN NaN NaN 108.46 1 112.09 111.59 112.59 3.6313 0 0 0 0.38417 1 26246 26246 1.3296 0.11481 1 24213 3809 14981 14990 28465 28465 0.21712679430129356 LLRHWPFG 8 Unmodified _LLRHWPFG_ 0 0 0 ENSG00000139874|ENST00000267377|SSTR1 ENSG00000139874|ENST00000267377|SSTR1 ENSG00000139874|ENST00000267377|SSTR1 MULTI-MSMS UPN48_class_I_Rep_2 6 513.2866821289062 2 513.287611 1024.56067 0.27416 0.00014072 -1.2463 -0.00063969 -0.97209 -0.00049896 513.2868245908635 49.464 0.38894 53.16 53.075 53.464 3.6954 32 23 2 0 0 0 0.82752 1 10000 10000 10.183 0 1 107980 24214 3156 14982 14991 28466 28466 0.049372074707889624 LLRIALERW 9 Unmodified _LLRIALERW_ 0 0 0 LTR85c_dup719|chr10:75441146-75441887:-|1.439697721066485|0.0093459209577916|7.27|147.0|19|3|sense LTR85c_dup719|chr10:75441146-75441887:-|1.439697721066485|0.0093459209577916|7.27|147.0|19|3|sense LTR85c_dup719|chr10:75441146-75441887:-|1.439697721066485|0.0093459209577916|7.27|147.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 585.359375 2 585.361308 1168.70806 NaN NaN NaN NaN NaN NaN NaN 75.556 1 75.556 75.056 76.056 0 0 0 0 0.4007 1 17574 17574 0.52476 0.12405 1 24215 15722 14983 14992 28467 28467 0.13045679284914513 LLRIEAAD 8 Unmodified _LLRIEAAD_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|194|1|anti-sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|194|1|anti-sense MSMS UPN46_class_I_Rep_3 1 450.5933837890625 2 450.761092 899.507631 NaN NaN NaN NaN NaN NaN NaN 41.605 1 41.605 41.105 42.105 0 0 0 0 0.40581 1 8170 8170 2.8892 0 1 + 24216 23713 14984 14993 28468 28468 0.0538578489745305 LLRKGKQAL 9 Unmodified _LLRKGKQAL_ 0 0 0 REV__MER67C_dup2|chr1:36465010-36465694:+|2.3606790289441646|0.2597002391742419|3.18|151.0|9|2|sense REV__MER67C_dup2|chr1:36465010-36465694:+|2.3606790289441646|0.2597002391742419|3.18|151.0|9|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 513.8428344726562 2 513.842751 1025.67095 -0.2907 -0.00014937 -0.00062591 -3.2162E-07 -0.29132 -0.0001497 513.8426811713292 18.751 0.80081 22.141 21.816 22.617 3.3898 113 85 2 0 0 0 0.12321 1 1614 1614 3.9444 0 1 58339 + 24217 31536 14985 14994 28469 28469 0.15914007739161207 LLRKHRHQTK 10 Unmodified _LLRKHRHQTK_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MULTI-SECPEP UPN48_class_I_Rep_2 6 439.27117919921875 3 439.605583 1315.79492 0.096022 4.2212E-05 0.47078 0.00020696 0.5668 0.00024917 439.6057704807865 35.494 0.29585 39.181 39.082 39.378 3.6877 36 24 2 0 0 0 0.84575 1 5838 5838 0.62683 0 1 74843 24218 1201 14986 14995 28470 28470 0.14965478559338408 LLRKLQAQEI 10 Unmodified _LLRKLQAQEI_ 0 0 0 ENSG00000123636|ENST00000392783|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-4|BAZ2B;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|8|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|17|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|23|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|9|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|14|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|20|intron;ENST00000472953.1_1_2:160261332-160289886:-|nuORF;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|4|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|16|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|2|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|10|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|7|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|15|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|3|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|5|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|21|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|26|intron;ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|25|intron ENSG00000123636|ENST00000392783|BAZ2B ENSG00000123636|ENST00000392783|BAZ2B MULTI-MSMS UPN47_class_I_Rep_1 2 404.5884704589844 3 404.587195 1210.73976 -0.44457 -0.00017987 3.5981 0.0014557 3.1535 0.0012759 404.5885436919811 37.293 0.14439 40.958 40.897 41.041 3.6652 13 8 2 0 0 0 0.56444 1 7074 7074 0.69767 0 1 36848 24219 2435 14987 14996 28471 28471 0.14281627248237783 LLRLAVVP 8 Unmodified _LLRLAVVP_ 0 0 0 REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.2975769042969 2 440.802563 879.590573 0.088306 3.8926E-05 -3.4618 -0.001526 -3.3735 -0.0014871 440.7993171808463 82.143 0.18921 85.655 85.588 85.777 3.5122 36 22 2 0 0 0 0.82752 1 20519 20519 0.79363 0 1 46150 + 24220 29500 14988 14997 28472 28472 0.1459614641612461 LLRLAVVP 8 Unmodified _LLRLAVVP_ 0 0 0 REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 440.802563 879.590573 0.088306 3.8926E-05 -3.4618 -0.001526 -3.3735 -0.0014871 440.7993171808463 82.143 0.18921 85.655 85.588 85.777 3.5122 0.21496 0.0005092 NaN 0.79363 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 46150 + 24221 29500 14988 14997 0.1459614641612461 LLRLAVVP 8 Unmodified _LLRLAVVP_ 0 0 0 REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 440.802563 879.590573 -0.20655 -9.1047E-05 -1.8973 -0.00083634 -2.1038 -0.00092738 440.79941299116587 81.973 0.1326 85.357 85.285 85.418 3.3839 -0.082719 0.0018885 NaN 0.79363 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 41733 + 24222 29500 14988 14997 0.1459614641612461 LLRLAVVP 8 Unmodified _LLRLAVVP_ 0 0 0 REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense REV__L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|307|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 440.802563 879.590573 0.18008 7.938E-05 -5.2217 -0.0023017 -5.0416 -0.0022223 440.7991041744151 81.623 0.19717 85.308 85.278 85.475 3.685 -0.13224 -0.0010423 NaN 0.79363 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 57564 + 24223 29500 14988 14997 0.1459614641612461 LLRLCEDSHL 10 Unmodified _LLRLCEDSHL_ 0 0 0 MER110A_dup410|chr10:87260252-87260708:-|1.0045716527219382|0.060203990167464|4.06|150.0|6|1|sense;MER110A_dup408|chr10:79738045-79738502:-|1.3316650932505545|0.0175022078644154|6.25|144.0|10|2|sense MER110A_dup410|chr10:87260252-87260708:-|1.0045716527219382|0.060203990167464|4.06|150.0|6|1|sense MER110A_dup410|chr10:87260252-87260708:-|1.0045716527219382|0.060203990167464|4.06|150.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 599.81640625 2 599.816073 1197.61759 0.56104 0.00033652 0.16555 9.9302E-05 0.7266 0.00043582 599.816112950164 64.283 0.19043 67.791 67.643 67.834 3.5083 26 16 2 0 0 0 0.56354 1 14414 14414 1.3295 0 1 81581 24224 15769 14989 14998 28473 28473 0.026688421743529034 LLRLFKLKERY 11 Unmodified _LLRLFKLKERY_ 0 0 0 ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;nc|ENSG00000186815|Q9ULQ1-2|TPCN1 ENST00000428632.7_1_12:113682520-113726187:+|nuORF ENST00000428632.7_1_12:113682520-113726187:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 493.6448974609375 3 493.645045 1477.9133 0.12518 6.1794E-05 -0.25488 -0.00012582 -0.1297 -6.4024E-05 493.97923520607395 33.61 0.44932 33.61 33.513 33.963 0 39 35 2 0 0 0 0.68502 1 5941 5941 0.073264 0.073264 1 128770 24225 5165 14990 14999 28474 28474 0.19346413024504727 LLRLGTSHL 9 Unmodified _LLRLGTSHL_ 0 0 0 MLT1A-int_dup300|chr10:1097615-1098088:+|1.0594807124354069|0.1751345786576888|2.6|151.0|2|1|sense MLT1A-int_dup300|chr10:1097615-1098088:+|1.0594807124354069|0.1751345786576888|2.6|151.0|2|1|sense MLT1A-int_dup300|chr10:1097615-1098088:+|1.0594807124354069|0.1751345786576888|2.6|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 505.3110046386719 2 505.311284 1008.60801 NaN NaN NaN NaN NaN NaN NaN 46.422 1 49.666 49.166 50.166 3.2439 0 0 0 0.38639 1 9930 9930 3.9444 0 1 24226 16246 14991 15000 28475 28475 0.10405441951138528 LLRLLLRPE 9 Unmodified _LLRLLLRPE_ 0 0 0 ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 561.8704833984375 2 561.871508 1121.72846 0.42617 0.00023945 -1.5062 -0.00084628 -1.08 -0.00060683 561.8706989163423 108.06 0.080879 111.74 111.67 111.75 3.6813 15 7 3 0 0 0 0.42249 1 25525 25525 6.7232 0 1 1525700 24227 7123 14992 15001 28476 28476 0.1724684994474046 LLRLLLRPE 9 Unmodified _LLRLLLRPE_ 0 0 0 ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 561.871508 1121.72846 0.50709 0.00028492 -2.1534 -0.0012099 -1.6463 -0.00092503 561.8699032387428 107.97 0.054382 111.61 111.57 111.63 3.6355 -0.0079888 -0.0004183 NaN 6.7232 8 2 4 NaN NaN NaN NaN 0 NaN NaN 0 914620 24228 7123 14992 15001 0.1724684994474046 LLRLLLRPE 9 Unmodified _LLRLLLRPE_ 0 0 0 ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 561.871508 1121.72846 0.63485 0.0003567 -2.3374 -0.0013133 -1.7025 -0.0009566 561.870128804079 107.99 0.045013 111.52 111.49 111.54 3.5333 -0.089511 -0.00062501 NaN 6.7232 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 698570 24229 7123 14992 15001 0.1724684994474046 LLRLLLRPE 9 Unmodified _LLRLLLRPE_ 0 0 0 ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF ENST00000498707.5_1_3:64673464-64673620:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 561.871508 1121.72846 0.49313 0.00027707 -1.754 -0.00098554 -1.2609 -0.00070847 561.8704261346493 107.91 0.035278 111.58 111.55 111.59 3.6746 -0.029998 3.0511E-05 NaN 6.7232 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 455710 24230 7123 14992 15001 0.1724684994474046 LLRLPTLIQHN 11 Unmodified _LLRLPTLIQHN_ 0 0 0 L1ME2_dup4674|chr6:2332218-2332715:+|1.1778475239685742|0.0497343716274293|4.57|151.0|31|3|anti-sense L1ME2_dup4674|chr6:2332218-2332715:+|1.1778475239685742|0.0497343716274293|4.57|151.0|31|3|anti-sense L1ME2_dup4674|chr6:2332218-2332715:+|1.1778475239685742|0.0497343716274293|4.57|151.0|31|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.2720642089844 3 439.938228 1316.79285 0.10175 4.4766E-05 -0.21544 -9.4779E-05 -0.11368 -5.0013E-05 439.9380910623386 50.636 0.29142 50.636 50.489 50.781 0 46 34 2 0 0 0 0.66452 1 10737 10737 1.9275 0.47239 1 315600 24231 12504 14993 15002 28477 28477 0.14713005030898785 LLRNTALMVF 10 Unmodified _LLRNTALMVF_ 0 0 0 ENST00000552401.5_2_6:90572044-90572224:+|nuORF ENST00000552401.5_2_6:90572044-90572224:+|nuORF ENST00000552401.5_2_6:90572044-90572224:+|nuORF MSMS UPN47_class_I_Rep_3 4 589.3427734375 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 86.65 1 90.03 89.53 90.53 3.3801 0 0 0 0.53105 1 21718 21718 3.5965 0.8613 1 24232 7406 14994 15003 28478 28478 0.0876321093903698 LLRPGVLLA 9 Unmodified _LLRPGVLLA_ 0 0 0 REV__ENSG00000119227|ENST00000412723|PIGZ REV__ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS UPN46_class_I_Rep_3 1 476.3063049316406 2 476.32112 950.627687 0.20355 9.6957E-05 -0.31468 -0.00014989 -0.11112 -5.2929E-05 476.3208254589824 68.049 0.50375 68.049 67.84 68.344 0 70 51 2 0 0 0 0.18929 1 15486 15486 21.747 0 1 709190 + 24233 18667 14995 15004 28479 28479 0.15039817961894641 LLRPGVLLA 9 Unmodified _LLRPGVLLA_ 0 0 0 REV__ENSG00000119227|ENST00000412723|PIGZ REV__ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS UPN47_class_I_Rep_3 4 476.3210754394531 2 476.32112 950.627687 -0.0073231 -3.4881E-06 -0.2111 -0.00010055 -0.21842 -0.00010404 476.32084362743075 61.644 0.88972 64.81 64.533 65.423 3.1667 129 64 3 0 0 0 0.18929 1 14632 14632 21.747 4.8044 1 297650 + 24234 18667 14995 15004 28480 28480 0.15039817961894641 LLRPHPLP 8 Unmodified _LLRPHPLP_ 0 0 0 ENSG00000106789|ENST00000375077|CORO2A REV__L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|363|3|anti-sense REV__L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|363|3|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 33.017 1 36.304 35.804 36.804 3.2867 0 0 0 0.40581 1 5837 5837 2.8892 0 1 24235 1802 14996 15005 28481 28481 0.1079437813059485 LLRPRCCV 8 Unmodified _LLRPRCCV_ 0 0 0 ENST00000510814.5_1_4:185350169-185395199:-|nuORF ENST00000510814.5_1_4:185350169-185395199:-|nuORF ENST00000510814.5_1_4:185350169-185395199:-|nuORF MSMS UPN46_class_I_Rep_3 1 480.2690734863281 2 480.267507 958.520461 NaN NaN NaN NaN NaN NaN NaN 66.238 1 66.238 65.738 66.738 0 0 0 0 0.40738 1 15018 15018 0.79363 0 1 24236 7184 14997 15006 28482 28482 0.039542014843618745 LLRQRQPLRRR 11 Unmodified _LLRQRQPLRRR_ 0 0 0 REV__ENST00000331569.5_1_8:37554703-37555105:+|nuORF REV__ENST00000331569.5_1_8:37554703-37555105:+|nuORF MSMS UPN47_class_I_Rep_1 2 497.9844665527344 3 497.986687 1490.93823 NaN NaN NaN NaN NaN NaN NaN 86.743 1 90.359 89.859 90.859 3.6153 0 0 0 0.38417 1 21671 21671 0.094841 0.094841 1 + 24237 21781 14998 15007 28483 28483 0.21239905670427106 LLRRCLPLM 9 Unmodified _LLRRCLPLM_ 0 0 0 REV__ENST00000372086.3_1_1:45923487-45956596:-|nuORF REV__ENST00000372086.3_1_1:45923487-45956596:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 557.8326416015625 2 557.833014 1113.65148 0.48459 0.00027032 -0.78733 -0.0004392 -0.30274 -0.00016888 557.8325858201221 51.985 0.34569 55.507 55.317 55.663 3.5227 47 34 3 0 0 0 0.3898 1 10732 10732 8.5933 0.98433 1 310030 + 24238 21971 14999 15008 28484 28484 0.09919592132382604 LLRRIRKMLTF 11 Unmodified _LLRRIRKMLTF_ 0 0 0 ENST00000495346.1_1_10:71993524-71993614:-|nuORF ENST00000495346.1_1_10:71993524-71993614:-|nuORF ENST00000495346.1_1_10:71993524-71993614:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 482.9743957519531 3 482.974508 1445.90169 0.22306 0.00010773 0.81627 0.00039424 1.0393 0.00050197 482.97459690146 50.503 1.442 54.198 53.65 55.092 3.6946 203 91 3 0 0 0 0.68478 1 10391 10391 0.094841 0.011491 1 258060 24239 7092 15000 15009 28485 28485 0.1965789272951497 LLRRKTPF 8 Unmodified _LLRRKTPF_ 0 0 0 ENST00000473202.1_1_2:224840506-224840587:-|nuORF ENST00000473202.1_1_2:224840506-224840587:-|nuORF ENST00000473202.1_1_2:224840506-224840587:-|nuORF MSMS UPN48_class_I_Rep_1 5 515.8282470703125 2 515.829643 1029.64473 NaN NaN NaN NaN NaN NaN NaN 73.957 1 77.438 76.938 77.938 3.4812 0 0 0 0.40364 1 17457 17457 5.7604 3.1829 1 24240 6940 15001 15010 28486 28486 0.1310973856768669 LLRRLKVQDQ 10 Unmodified _LLRRLKVQDQ_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000508604.5_1_4:77039101-77051958:-|nuORF nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MSMS UPN48_class_I_Rep_2 6 634.8929443359375 2 634.893503 1267.77245 NaN NaN NaN NaN NaN NaN NaN 102.43 1 106.15 105.65 106.65 3.7252 0 0 0 0.53105 1 24262 24262 1.3295 0.80477 1 24241 3108 15002 15011 28487 28487 0.14927834371087556 LLRRMFFPHRI 11 Unmodified _LLRRMFFPHRI_ 0 0 0 L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.9588623046875 3 495.958969 1484.85508 0.30672 0.00015212 -0.046842 -2.3232E-05 0.25988 0.00012889 496.2933056497302 98.675 0.10703 98.675 98.605 98.712 0 23 12 3 0 0 0 0.68478 1 24026 24026 0.094841 0 1 115750 24242 12461 15003 15012 28488 28488 0.13204452898230556 LLRRMFFPHRI 11 Unmodified _LLRRMFFPHRI_ 0 0 0 L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 495.958969 1484.85508 0.30672 0.00015212 -0.046842 -2.3232E-05 0.25988 0.00012889 496.2933056497302 98.675 0.10703 98.675 98.605 98.712 0 -0.13384 0.00032907 NaN 0.094841 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 115750 24243 12461 15003 15012 0.13204452898230556 LLRRMFFPHRI 11 Unmodified _LLRRMFFPHRI_ 0 0 0 L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense L1ME2_dup10898|chr16:29163136-29163903:-|1.0248739364063262|0.0164389812735079|5.96|151.0|33|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 495.958969 1484.85508 0.27888 0.00013831 -0.35715 -0.00017713 -0.078272 -3.882E-05 495.95868894627785 95.162 0.22636 98.943 98.775 99.001 3.7804 0.13384 -0.00013263 NaN 0.094841 50 31 3 NaN NaN NaN NaN 0 NaN NaN 0 182400 24244 12461 15003 15012 0.13204452898230556 LLRRPLYRNLL 11 Unmodified _LLRRPLYRNLL_ 0 0 0 NCCRP1|p.R221Efs*44|1|0.09|ENSG00000188505|chr19:39200455-39200455|G/-|frameshift_variant;ENSG00000188505|ENST00000339852|NCCRP1 NCCRP1|p.R221Efs*44|1|0.09|ENSG00000188505|chr19:39200455-39200455|G/-|frameshift_variant NCCRP1|p.R221Efs*44|1|0.09|ENSG00000188505|chr19:39200455-39200455|G/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 476.3208923339844 3 476.305022 1425.89324 NaN NaN NaN NaN NaN NaN NaN 61.845 1 65.104 64.604 65.604 3.2594 0 0 0 0.38417 1 14566 14566 4.7159 0 1 24245 5234 15004 15013 28489 28489 0.19732662084561525 LLRRTVDWW 9 Unmodified _LLRRTVDWW_ 0 0 0 REV__L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|77|3|sense REV__L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|77|3|sense MSMS UPN48_class_I_Rep_1 5 622.8488159179688 2 622.848564 1243.68258 NaN NaN NaN NaN NaN NaN NaN 107.2 1 110.83 110.33 111.33 3.6299 0 0 0 0.39428 1 25829 25829 2.0598 0 1 + 24246 27454 15005 15014 28490 28490 0.07048204762509158 LLRRVGPG 8 Unmodified _LLRRVGPG_ 0 0 0 REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 434.7794189453125 2 434.279786 866.54502 0.18269 7.9341E-05 2.8963 0.0012578 3.079 0.0013371 434.2826269545729 53.289 3.6731 56.899 56.177 59.85 3.6098 543 241 3 0 0 0 0.82752 1 12041 12041 2.5775 0 1 1313100 + 24247 22030 15006 15015 28491 28491 0.10640920953755995 LLRSKITKPNV 11 Unmodified _LLRSKITKPNV_ 0 0 0 nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1 nc|ENSG00000197381|P78563-6|ADARB1 nc|ENSG00000197381|P78563-6|ADARB1 MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3775024414062 2 634.906079 1267.79761 0.51361 0.00032609 2.8199 0.0017904 3.3336 0.0021165 634.9071865598846 103.7 0.081093 107.22 107.19 107.27 3.5205 13 11 2 0 0 0 22.551 1 25435 25435 5.7319 4.5385 1 8225700 24248 5366 15007 15016 28492 28492 0.17441889173642267 LLRSMPLL 8 Unmodified _LLRSMPLL_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7956237792969 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 57.285 1 60.722 60.222 61.222 3.437 0 0 0 0.40581 1 13146 13146 2.8892 0 1 24249 12190 15008 15017 28493 28493 0.10008482818830089 LLRSMPLL 8 Unmodified _LLRSMPLL_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79541015625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 57.407 1 60.844 60.344 61.344 3.437 0 0 0 0.40581 1 13181 13181 2.8892 0 1 24250 12190 15008 15017 28494 28494 0.10008482818830089 LLRSMPLL 8 Unmodified _LLRSMPLL_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7957763671875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 61.21 1 64.592 64.092 65.092 3.3815 0 0 0 0.40581 1 14337 14337 2.8892 0 1 24251 12190 15008 15017 28495 28495 0.10008482818830089 LLRSMPLL 8 Unmodified _LLRSMPLL_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7953796386719 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 106.48 1 110.19 109.69 110.69 3.7088 0 0 0 0.40581 1 26105 26105 2.8892 0 1 24252 12190 15008 15017 28496 28496 0.10008482818830089 LLRSMPLL 8 Unmodified _LLRSMPLL_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7956848144531 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 60.782 1 64.047 63.547 64.547 3.2654 0 0 0 0.40581 1 14244 14244 2.8892 0 1 24253 12190 15008 15017 28497 28497 0.10008482818830089 LLRTEAGAFE 10 Unmodified _LLRTEAGAFE_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENST00000492578.1_1_22:50720234-50720417:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MSMS UPN47_class_I_Rep_1 2 553.8140258789062 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 57.319 1 60.756 60.256 61.256 3.437 0 0 0 0.53105 1 13156 13156 10.074 0 1 24254 5320 15009 15018 28498 28498 0.02820824126365551 LLRWVTRWVP 10 Unmodified _LLRWVTRWVP_ 0 0 0 REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|11|1|sense REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 442.5997314453125 3 442.599547 1324.77681 -0.027608 -1.2219E-05 0.31977 0.00014153 0.29217 0.00012931 442.5995362295794 47.095 1.7122 50.614 49.754 51.466 3.5192 337 121 4 0 0 0 0.56296 1 9280 9280 1.7423 1.7423 1 522740 + 24255 24973 15010 15019 28499 28499 0.12741343584639253 LLSAALALWV 10 Unmodified _LLSAALALWV_ 0 0 0 REV__nc|ENSG00000175344|P36544-3|CHRNA7 REV__nc|ENSG00000175344|P36544-3|CHRNA7 MSMS UPN47_class_I_Rep_1 2 528.8258666992188 2 528.826235 1055.63792 NaN NaN NaN NaN NaN NaN NaN 97.357 1 101.14 100.64 101.64 3.7861 0 0 0 0.53105 1 24126 24126 10.824 0 1 + 24256 20553 15011 15020 28500 28500 0.11232380896444738 LLSCDVWPSSA 11 Unmodified _LLSCDVWPSSA_ 0 0 0 REV__L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|165|3|anti-sense REV__L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|165|3|anti-sense MSMS UPN48_class_I_Rep_1 5 589.549072265625 2 589.281531 1176.54851 NaN NaN NaN NaN NaN NaN NaN 34.539 1 38.053 37.553 38.553 3.5144 0 0 0 0.38417 1 5538 5538 1.3295 0 1 + 24257 29055 15012 15021 28501 28501 -0.032702418452117854 LLSDALKLL 9 Unmodified _LLSDALKLL_ 0 0 0 REV__MLT2A2_dup139|chr1:149633356-149633711:-|3.72574654029084|0.0278911665267971|7.06|151.0|12|3|sense REV__MLT2A2_dup139|chr1:149633356-149633711:-|3.72574654029084|0.0278911665267971|7.06|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.3182678222656 2 493.318243 984.621933 0.30684 0.00015137 -0.068695 -3.3889E-05 0.23815 0.00011748 493.3181397323839 69.531 1.1333 73.044 72.584 73.717 3.5128 208 89 4 0 0 0 0.074367 1 15979 15979 39.957 0 1 1634300 + 24258 31811 15013 15022 28502 28502 0.12900674659545075 LLSECFTYY 9 Unmodified _LLSECFTYY_ 0 0 0 L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|122|3|anti-sense L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|122|3|anti-sense L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|122|3|anti-sense MSMS UPN47_class_I_Rep_1 2 569.759765625 2 569.759901 1137.50525 NaN NaN NaN NaN NaN NaN NaN 71.617 1 74.992 74.492 75.492 3.3751 0 0 0 0.39326 1 17473 17473 2.3027 0 1 24259 8814 15014 15023 28503 28503 -0.05800431622492397 LLSEPASFHL 10 Unmodified _LLSEPASFHL_ 0 0 0 REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|260|1|anti-sense REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|260|1|anti-sense MSMS UPN48_class_I_Rep_3 7 557.3023681640625 2 557.300581 1112.58661 NaN NaN NaN NaN NaN NaN NaN 74.933 1 78.499 77.999 78.999 3.5659 0 0 0 0.53105 1 17576 17576 14.838 0 1 + 24260 24970 15015 15024 28504 28504 0.03482012131757983 LLSFWSLEP 9 Unmodified _LLSFWSLEP_ 0 0 0 MER68_dup333|chr4:48223645-48224158:+|1.5142564172242985|0.0036315709353135|8.7|151.0|7|2|sense MER68_dup333|chr4:48223645-48224158:+|1.5142564172242985|0.0036315709353135|8.7|151.0|7|2|sense MER68_dup333|chr4:48223645-48224158:+|1.5142564172242985|0.0036315709353135|8.7|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 546.7566528320312 2 546.292225 1090.5699 NaN NaN NaN NaN NaN NaN NaN 51.477 1 54.815 54.315 55.315 3.3386 0 0 0 0.38639 1 11406 11406 3.9444 0 1 24261 16196 15016 15025 28505 28505 0.02823511245787813 LLSGVLRSV 9 Unmodified _LLSGVLRSV_ 0 0 0 REV__LTR14B_dup72|chr3:128920573-128921195:+|1.5068574790829072|0.2307519838750524|2.71|151.0|2|1|sense REV__LTR14B_dup72|chr3:128920573-128921195:+|1.5068574790829072|0.2307519838750524|2.71|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.3002624511719 2 472.300384 942.586216 -0.04335 -2.0474E-05 -0.77662 -0.0003668 -0.81997 -0.00038727 472.300391581047 49.731 0.66678 53.39 53.127 53.794 3.6592 63 38 2 0 0 0 0.16799 1 10820 10820 23.79 0 1 79389 + 24262 30847 15017 15026 28506 28506 0.112626372025602 LLSGVTTIRF 10 Unmodified _LLSGVTTIRF_ 0 0 0 L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|142|3|anti-sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|142|3|anti-sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|142|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.82958984375 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 81.935 1 85.62 85.12 86.12 3.685 0 0 0 0.53105 1 19411 19411 3.2813 0.97858 1 24263 14006 15018 15027 28507 28507 0.10094577919812764 LLSHLALWP 9 Unmodified _LLSHLALWP_ 0 0 0 REV__ENST00000374810.7_1_20:33298341-33298617:+|nuORF REV__ENST00000374810.7_1_20:33298341-33298617:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 525.310546875 2 525.310752 1048.60695 0.3878 0.00020371 -0.16094 -8.4542E-05 0.22686 0.00011917 525.3105333444462 75.166 0.11591 78.756 78.656 78.772 3.59 19 13 2 0 0 0 0.3898 1 17715 17715 8.5933 0 1 124320 + 24264 22003 15019 15028 28508 28508 0.08459227582216045 LLSHLALWP 9 Unmodified _LLSHLALWP_ 0 0 0 REV__ENST00000374810.7_1_20:33298341-33298617:+|nuORF REV__ENST00000374810.7_1_20:33298341-33298617:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 525.310752 1048.60695 0.3878 0.00020371 -0.16094 -8.4542E-05 0.22686 0.00011917 525.3105333444462 75.166 0.11591 78.756 78.656 78.772 3.59 -0.096297 -0.00021521 NaN 8.5933 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 124320 + 24265 22003 15019 15028 0.08459227582216045 LLSHLALWP 9 Unmodified _LLSHLALWP_ 0 0 0 REV__ENST00000374810.7_1_20:33298341-33298617:+|nuORF REV__ENST00000374810.7_1_20:33298341-33298617:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 525.310752 1048.60695 0.48757 0.00025613 -0.26213 -0.0001377 0.22545 0.00011843 525.3105839087842 75.477 0.18086 79.043 78.978 79.159 3.5659 0.19069 -0.00032152 NaN 8.5933 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 133690 + 24266 22003 15019 15028 0.08459227582216045 LLSHLARR 8 Unmodified _LLSHLARR_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.3036804199219 2 483.303793 964.593033 0.25244 0.00012201 0.23617 0.00011414 0.48861 0.00023615 483.3037926955769 107.81 0.20721 111.48 111.39 111.59 3.6724 36 14 3 0 0 0 0.82752 1 26421 26421 8.5933 0 1 63472000 24267 11363 15020 15029 28509 28509 0.10931994873794793 LLSHLARR 8 Unmodified _LLSHLARR_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 483.3039245605469 2 483.303793 964.593033 0.24369 0.00011777 0.13276 6.4162E-05 0.37644 0.00018194 483.30374784511827 107.77 0.17567 111.44 111.38 111.56 3.6783 44 16 4 0 0 0 0.82752 1 25483 25483 8.5933 0 1 69563000 24268 11363 15020 15029 28510 28510 0.10931994873794793 LLSHLARR 8 Unmodified _LLSHLARR_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 483.303793 964.593033 0.25244 0.00012201 0.23617 0.00011414 0.48861 0.00023615 483.3037926955769 107.81 0.20721 111.48 111.39 111.59 3.6724 0.071857 0.00018287 NaN 8.5933 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 63472000 24269 11363 15020 15029 0.10931994873794793 LLSHLARR 8 Unmodified _LLSHLARR_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 483.303793 964.593033 0.18089 8.7424E-05 -0.0072016 -3.4806E-06 0.17369 8.3943E-05 483.3036694281473 107.78 0.13615 111.31 111.27 111.41 3.5382 -0.093468 -5.2378E-05 NaN 8.5933 52 16 4 NaN NaN NaN NaN 0 NaN NaN 0 35930000 24270 11363 15020 15029 0.10931994873794793 LLSHLARR 8 Unmodified _LLSHLARR_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 483.303793 964.593033 0.24369 0.00011777 0.13276 6.4162E-05 0.37644 0.00018194 483.30374784511827 107.77 0.17567 111.44 111.38 111.56 3.6783 0.036156 8.2908E-05 NaN 8.5933 44 16 4 NaN NaN NaN NaN 0 NaN NaN 0 69563000 24271 11363 15020 15029 0.10931994873794793 LLSHLARR 8 Unmodified _LLSHLARR_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|31|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 483.303793 964.593033 0.22777 0.00011008 -0.29982 -0.0001449 -0.072046 -3.482E-05 483.30355029074735 107.78 0.15723 111.46 111.39 111.54 3.6813 0.052919 -0.00033522 NaN 8.5933 44 14 4 NaN NaN NaN NaN 0 NaN NaN 0 81786000 24272 11363 15020 15029 0.10931994873794793 LLSHYLGYRI 10 Unmodified _LLSHYLGYRI_ 0 0 0 REV__ENSG00000179163|ENST00000374479|FUCA1 REV__ENSG00000179163|ENST00000374479|FUCA1 MSMS UPN48_class_I_Rep_2 6 617.8497314453125 2 617.850773 1233.68699 NaN NaN NaN NaN NaN NaN NaN 41.327 1 45.078 44.578 45.578 3.7508 0 0 0 0.53105 1 7537 7537 3.2813 0 1 + 24273 20670 15021 15030 28511 28511 0.07949669185404673 LLSIPNKY 8 Unmodified _LLSIPNKY_ 0 0 0 REV__L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|24|1|anti-sense REV__L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|24|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2822570800781 2 474.28166 946.548768 0.21399 0.00010149 1.3892 0.00065885 1.6031 0.00076034 474.2821773201936 46.7 0.06366 46.7 46.68 46.744 0 11 3 5 0 0 0 0.82752 1 9596 9596 2.8892 0 1 4126000 + 24274 27277 15022 15031 28512 28512 0.07335545936950894 LLSIPNKY 8 Unmodified _LLSIPNKY_ 0 0 0 REV__L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|24|1|anti-sense REV__L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|24|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 474.28166 946.548768 0.21399 0.00010149 1.3892 0.00065885 1.6031 0.00076034 474.2821773201936 46.7 0.06366 46.7 46.68 46.744 0 0 0 NaN 2.8892 11 3 5 NaN NaN NaN NaN 0 NaN NaN 0 4126000 + 24275 27277 15022 15031 0.07335545936950894 LLSKEKASL 9 Unmodified _LLSKEKASL_ 0 0 0 REV__ENST00000310614.11_1_11:73575441-73575483:+|nuORF REV__ENST00000310614.11_1_11:73575441-73575483:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.8052673339844 2 494.8055 987.596446 0.27896 0.00013803 0.0030448 1.5066E-06 0.28201 0.00013954 494.8055220201244 75.275 0.32465 78.588 78.431 78.756 3.3127 34 28 2 0 0 0 0.46434 1 18562 18562 4.3292 0 1 68591 + 24276 21704 15023 15032 28513 28513 0.10215200137145075 LLSKHPGF 8 Unmodified _LLSKHPGF_ 0 0 0 ENST00000372422.6_1_6:43483813-43484699:-|nuORF;ENST00000510102.5_1_6:43483884-43484699:-|nuORF;ENST00000490447.6_1_6:43483884-43484699:-|nuORF ENST00000372422.6_1_6:43483813-43484699:-|nuORF ENST00000372422.6_1_6:43483813-43484699:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 450.2617492675781 2 449.760895 897.507237 0.17976 8.085E-05 -0.91603 -0.00041199 -0.73626 -0.00033114 449.7603753905964 108.77 0.28633 112.41 112.29 112.58 3.6355 41 24 2 0 0 0 0.72333 1 26782 26782 0.79363 0 1 9542000 24277 6398 15024 15033 28514 28514 0.054384099682806664 LLSKRLVD 8 Unmodified _LLSKRLVD_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS UPN47_class_I_Rep_1 2 472.3006591796875 2 472.300384 942.586216 -0.04335 -2.0474E-05 -0.77662 -0.0003668 -0.81997 -0.00038727 472.300391581047 49.731 0.66678 53.39 53.127 53.794 3.6592 63 38 2 0 0 0 0.82752 1 10823 10823 21.747 0.20967 1 79389 24278 5716 15025 15034 28515 28515 0.11262637202571568 LLSLEAALL 9 Unmodified _LLSLEAALL_ 0 0 0 REV__nc|ENSG00000117501|Q5TGP6|MROH9 REV__nc|ENSG00000117501|Q5TGP6|MROH9 MSMS UPN47_class_I_Rep_3 4 471.795654296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 70.39 1 73.601 73.101 74.101 3.2113 0 0 0 0.38299 1 17215 17215 4.756 2.1785 1 + 24279 18637 15026 15035 28516 28516 0.10660699251184269 LLSLEQPKM 9 Unmodified _LLSLEQPKM_ 0 0 0 REV__MLT1J_dup898|chr1:184968722-184969215:-|1.0854362849122274|0.0635704248525494|4.09|151.0|25|2|anti-sense REV__MLT1J_dup898|chr1:184968722-184969215:-|1.0854362849122274|0.0635704248525494|4.09|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_1 5 529.80029296875 2 529.79936 1057.58417 NaN NaN NaN NaN NaN NaN NaN 115.36 1 118.99 118.49 119.49 3.6282 0 0 0 0.39518 1 28061 28061 1.8442 0 1 + 24280 31784 15027 15036 28517 28517 0.057678404024500196 LLSLGQLRNLF 11 Unmodified _LLSLGQLRNLF_ 0 0 0 ENST00000533206.1_1_11:117023163-117034692:+|nuORF ENST00000533206.1_1_11:117023163-117034692:+|nuORF ENST00000533206.1_1_11:117023163-117034692:+|nuORF MSMS UPN48_class_I_Rep_1 5 637.3862915039062 2 637.38498 1272.75541 NaN NaN NaN NaN NaN NaN NaN 72.55 1 76.023 75.523 76.523 3.4732 0 0 0 0.38417 1 17034 17034 2.2828 0.19677 1 24281 7308 15028 15037 28518 28518 0.12993913765262732 LLSNLGERQS 10 Unmodified _LLSNLGERQS_ 0 0 0 AluJo_dup75698|chr20:63902985-63903231:-|1.0459548760857258|0.018989275390967|5.78|151.0|5|2|sense AluJo_dup75698|chr20:63902985-63903231:-|1.0459548760857258|0.018989275390967|5.78|151.0|5|2|sense AluJo_dup75698|chr20:63902985-63903231:-|1.0459548760857258|0.018989275390967|5.78|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 558.803955078125 2 558.80402 1115.59349 0.44834 0.00025054 -0.22632 -0.00012647 0.22203 0.00012407 558.8038695322157 39.45 0.31894 43.18 42.99 43.309 3.7297 31 29 2 0 0 0 0.55448 1 6985 6985 4.897 0.95262 1 71863 24282 128 15029 15038 28519 28519 0.040313250123290345 LLSPGFFLR 9 Unmodified _LLSPGFFLR_ 0 0 0 ENST00000323534.4_2_3:152880353-152880386:+|nuORF ENST00000323534.4_2_3:152880353-152880386:+|nuORF ENST00000323534.4_2_3:152880353-152880386:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 525.3110961914062 2 525.310752 1048.60695 0.33066 0.0001737 0.13368 7.0221E-05 0.46433 0.00024392 525.3107738281411 75.258 0.41555 78.758 78.607 79.022 3.4996 67 40 3 0 0 0 0.41259 1 17845 17845 7.2892 0 1 314510 24283 6158 15030 15039 28520 28520 0.08459227582216045 LLSPYPTNFGI 11 Unmodified _LLSPYPTNFGI_ 0 0 0 L1MEg_dup2617|chr3:11398103-11398581:+|1.0938602244766291|0.0029701587248742|8.52|151.0|33|3|anti-sense L1MEg_dup2617|chr3:11398103-11398581:+|1.0938602244766291|0.0029701587248742|8.52|151.0|33|3|anti-sense L1MEg_dup2617|chr3:11398103-11398581:+|1.0938602244766291|0.0029701587248742|8.52|151.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 611.3295288085938 2 611.329339 1220.64412 0.45126 0.00027587 -0.27352 -0.00016721 0.17774 0.00010866 611.3289848902878 69.989 0.92352 73.194 72.812 73.735 3.2044 180 76 3 0 0 0 0.64297 1 17073 17073 3.8763 0 1 499590 24284 13380 15031 15040 28521 28521 0.04262854337321187 LLSQCELVA 9 Unmodified _LLSQCELVA_ 0 0 0 REV__MER57B1_dup454|chr8:63190498-63190873:+|1.1280731086370028|0.0266462429405727|5.4|151.0|10|2|sense REV__MER57B1_dup454|chr8:63190498-63190873:+|1.1280731086370028|0.0266462429405727|5.4|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 488.2618408203125 2 488.26261 974.510668 NaN NaN NaN NaN NaN NaN NaN 67.943 1 71.307 70.807 71.807 3.3646 0 0 0 0.37891 1 16371 16371 5.7319 0 1 + 24285 31452 15032 15041 28522 28522 0.022392919599724337 LLSRNRLA 8 Unmodified _LLSRNRLA_ 0 0 0 ENSG00000099769|ENST00000215539|IGFALS;nc|ENSG00000099769|P35858-2|IGFALS ENSG00000099769|ENST00000215539|IGFALS ENSG00000099769|ENST00000215539|IGFALS MSMS UPN47_class_I_Rep_1 2 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 98.371 1 102.16 101.66 102.66 3.7871 0 0 0 0.40738 1 24353 24353 0.79363 0 1 24286 1444 15033 15042 28523 28523 0.1039228863688777 LLSSIHLVT 9 Unmodified _LLSSIHLVT_ 0 0 0 REV__ENST00000466459.5_1_7:112097053-112108063:+|nuORF REV__ENST00000466459.5_1_7:112097053-112108063:+|nuORF MSMS UPN48_class_I_Rep_1 5 491.80023193359375 2 491.800217 981.585882 NaN NaN NaN NaN NaN NaN NaN 67.859 1 71.311 70.811 71.811 3.4517 0 0 0 0.046744 1 15629 15629 37.974 3.5723 1 + 24287 17540 15034 15043 28524 28524 0.09435217482723601 LLSSLNDEV 9 Unmodified _LLSSLNDEV_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MULTI-MSMS UPN47_class_I_Rep_3 4 495.2601318359375 2 495.261122 988.507691 0.22151 0.0001097 0.32296 0.00015995 0.54446 0.00026965 495.2612370924979 71.073 0.38784 74.285 74.188 74.575 3.2113 45 34 2 0 0 0 0.279 1 17399 17399 15.248 0 1 163420 24288 4133 15035 15044 28525 28525 0.012977401068155814 LLSSLSPPTYS 11 Unmodified _LLSSLSPPTYS_ 0 0 0 REV__L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|161|3|anti-sense REV__L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|161|3|anti-sense MSMS UPN48_class_I_Rep_1 5 582.8090209960938 2 582.810979 1163.6074 NaN NaN NaN NaN NaN NaN NaN 19.718 1 23.256 22.756 23.756 3.5378 0 0 0 0.38417 1 1541 1541 1.1933 0.23107 1 + 24289 25433 15036 15045 28526 28526 0.032145577207757015 LLSSMVRELE 10 Unmodified _LLSSMVRELE_ 0 0 0 REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 588.817626953125 2 588.818281 1175.62201 -0.038369 -2.2592E-05 0.10288 6.0578E-05 0.064512 3.7986E-05 588.818335972611 36.205 0.7683 39.874 39.549 40.317 3.6692 93 55 2 0 0 0 0.55148 1 6694 6694 5.2969 1.7004 1 135260 + 24290 18739 15037 15046 28527 28527 0.04122306597264469 LLSSSLELI 9 Unmodified _LLSSSLELI_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|189|3|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|189|3|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|189|3|anti-sense MSMS UPN48_class_I_Rep_2 6 487.79071044921875 2 487.792058 973.569563 NaN NaN NaN NaN NaN NaN NaN 75.956 1 79.557 79.057 80.057 3.6011 0 0 0 0.38299 1 17928 17928 4.756 0 1 24291 11568 15038 15047 28528 28528 0.08172091525955238 LLSSYKKLT 9 Unmodified _LLSSYKKLT_ 0 0 0 L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|2|1|sense L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|2|1|sense L1MB8_dup2690|chr3:38233977-38235249:+|1.1350647858963312|0.2081963596865252|2.45|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 526.8217163085938 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 26.69 1 26.69 26.19 27.19 0 0 0 0 0.39598 1 3854 3854 1.6526 0.32309 1 24292 10985 15039 15048 28529 28529 0.10399773171229754 LLSTAILRKL 10 Unmodified _LLSTAILRKL_ 0 0 0 MamTip2_dup5793|chr15:64530773-64530924:+|1.868505895007236|0.0082955506227464|7.82|151.0|2|1|sense MamTip2_dup5793|chr15:64530773-64530924:+|1.868505895007236|0.0082955506227464|7.82|151.0|2|1|sense MamTip2_dup5793|chr15:64530773-64530924:+|1.868505895007236|0.0082955506227464|7.82|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3797607421875 2 564.379166 1126.74378 0.50118 0.00028286 0.44994 0.00025394 0.95113 0.0005368 564.3792508462637 109.45 0.36131 113.05 112.97 113.34 3.6046 47 44 2 0 0 0 0.56309 1 27052 27052 1.6526 0 1 405190 24293 15747 15040 15049 28530 28530 0.185477167419549 LLSTAILRKL 10 Unmodified _LLSTAILRKL_ 0 0 0 MamTip2_dup5793|chr15:64530773-64530924:+|1.868505895007236|0.0082955506227464|7.82|151.0|2|1|sense MamTip2_dup5793|chr15:64530773-64530924:+|1.868505895007236|0.0082955506227464|7.82|151.0|2|1|sense MamTip2_dup5793|chr15:64530773-64530924:+|1.868505895007236|0.0082955506227464|7.82|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 564.379166 1126.74378 0.43608 0.00024612 0.15296 8.6325E-05 0.58904 0.00033244 564.3791279249433 109.38 0.053703 113.05 113 113.05 3.6751 -0.0012302 -0.00030093 NaN 1.6526 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 996740 24294 15747 15040 15049 0.185477167419549 LLSVKVVI 8 Unmodified _LLSVKVVI_ 0 0 0 REV__nc|ENSG00000145495|O60337-6|MARCHF6 REV__nc|ENSG00000145495|O60337-6|MARCHF6 MSMS UPN48_class_I_Rep_2 6 435.7490234375 2 435.804771 869.59499 NaN NaN NaN NaN NaN NaN NaN 60.804 1 64.282 63.782 64.782 3.4785 0 0 0 0.4032 1 13455 13455 6.3541 0 1 + 24295 19515 15041 15050 28531 28531 0.15497610839054232 LLSWLRHKNH 10 Unmodified _LLSWLRHKNH_ 0 0 0 AluSz6_dup1293|chr1:44533983-44534279:-|1.4518495678773926|0.0008752999532271|10.7|150.0|4|1|sense AluSz6_dup1293|chr1:44533983-44534279:-|1.4518495678773926|0.0008752999532271|10.7|150.0|4|1|sense AluSz6_dup1293|chr1:44533983-44534279:-|1.4518495678773926|0.0008752999532271|10.7|150.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 435.2508239746094 3 435.250918 1302.73092 NaN NaN NaN NaN NaN NaN NaN 68.282 1 71.734 71.234 72.234 3.4517 0 0 0 0.53105 1 15756 15756 0.77653 0 1 24296 377 15042 15051 28532 28532 0.0916669840241866 LLSYAPGRI 9 Unmodified _LLSYAPGRI_ 0 0 0 REV__ENST00000540708.5_1_12:123466944-123467130:+|nuORF REV__ENST00000540708.5_1_12:123466944-123467130:+|nuORF MSMS UPN46_class_I_Rep_3 1 495.5467834472656 2 495.292559 988.570566 NaN NaN NaN NaN NaN NaN NaN 78.628 1 78.628 78.128 79.128 0 0 0 0 0.39518 1 18425 18425 1.8442 0 1 + 24297 22906 15043 15052 28533 28533 0.07582350685515848 LLSYSCSLII 10 Unmodified _LLSYSCSLII_ 0 0 0 LTR54B_dup618|chr12:116162051-116162419:+|1.3591107992427236|0.0107373972993422|6.98|151.0|21|2|anti-sense LTR54B_dup618|chr12:116162051-116162419:+|1.3591107992427236|0.0107373972993422|6.98|151.0|21|2|anti-sense LTR54B_dup618|chr12:116162051-116162419:+|1.3591107992427236|0.0107373972993422|6.98|151.0|21|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 556.3067016601562 2 556.307018 1110.59948 0.40866 0.00022734 -0.16596 -9.2326E-05 0.2427 0.00013502 556.3067915773624 63.881 0.67538 67.137 66.802 67.477 3.2556 100 57 2 0 0 0 0.84575 1 15174 15174 27.629 4.8925 1 268660 24298 15677 15044 15053 28534 28534 0.04860707199645731 LLTALRWLPAR 11 Unmodified _LLTALRWLPAR_ 0 0 0 ENST00000371589.8_1_9:139981425-139981509:+|nuORF ENST00000371589.8_1_9:139981425-139981509:+|nuORF ENST00000371589.8_1_9:139981425-139981509:+|nuORF MSMS UPN48_class_I_Rep_2 6 437.27630615234375 3 437.274952 1308.80303 NaN NaN NaN NaN NaN NaN NaN 64.602 1 68.079 67.579 68.579 3.4774 0 0 0 0.38417 1 14618 14618 1.3296 0.63198 1 24299 6393 15045 15054 28535 28535 0.16097612756107083 LLTAVGTTTR 10 Unmodified _LLTAVGTTTR_ 0 0 0 nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121868093-121877978:-|nuORF nc|ENSG00000089094|Q8NHM5-4|KDM2B nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS UPN47_class_I_Rep_2 3 516.8057250976562 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 86.74 1 90.181 89.681 90.681 3.4407 0 0 0 0.53105 1 21571 21571 3.5965 0 1 24300 1330 15046 15055 28536 28536 0.08297414506023415 LLTEIVGQYG 10 Unmodified _LLTEIVGQYG_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS UPN47_class_I_Rep_1 2 546.80078125 2 546.800414 1091.58628 0.40975 0.00022405 -0.12856 -7.0295E-05 0.28119 0.00015376 546.8002996194098 71.701 0.47429 75.076 74.89 75.364 3.3751 55 38 2 0 0 0 0.41718 1 17483 17483 18.146 5.1039 1 100780 + 24301 18280 15047 15056 28537 28537 0.04414592411922058 LLTEIVGQYG 10 Unmodified _LLTEIVGQYG_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS UPN47_class_I_Rep_2 3 546.8001098632812 2 546.800414 1091.58628 0.40025 0.00021886 -0.12673 -6.9296E-05 0.27352 0.00014956 546.8002904770232 71.911 0.59253 75.201 74.953 75.545 3.2899 78 51 2 0 0 0 0.36464 2 17627 17574;17627 22.736 8.8302 1 105510 + 24302 18280 15047 15056 28538;28539 28539 0.04414592411922058 LLTEIVGQYG 10 Unmodified _LLTEIVGQYG_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS UPN47_class_I_Rep_3 4 546.7999267578125 2 546.800414 1091.58628 0.43911 0.0002401 -0.40969 -0.00022402 0.029418 1.6086E-05 546.8001738643914 71.903 0.59637 75.122 74.877 75.474 3.2188 80 49 2 0 0 0 0.31818 4 17732 17657;17694;17732;17738 27.629 13.723 1 96046 + 24303 18280 15047 15056 28540;28541;28542;28543 28542 0.04414592411922058 LLTELYKFL 9 Unmodified _LLTELYKFL_ 0 0 0 L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|52|2|anti-sense L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|52|2|anti-sense L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_2 6 570.3397827148438 2 570.339175 1138.6638 NaN NaN NaN NaN NaN NaN NaN 72.726 1 76.291 75.791 76.791 3.5645 0 0 0 0.39598 1 17038 17038 1.6526 0 1 24304 12299 15048 15057 28544 28544 0.10001230348098034 LLTFLGHLL 9 Unmodified _LLTFLGHLL_ 0 0 0 REV__ENST00000299088.10_1_14:23468311-23468461:-|nuORF REV__ENST00000299088.10_1_14:23468311-23468461:-|nuORF MSMS UPN48_class_I_Rep_2 6 513.819091796875 2 513.820953 1025.62735 NaN NaN NaN NaN NaN NaN NaN 57.658 1 61.172 60.672 61.672 3.5142 0 0 0 0.34056 1 12489 12489 8.5933 3.3626 1 + 24305 21663 15049 15058 28545 28545 0.11556398242055366 LLTHTTLL 8 Unmodified _LLTHTTLL_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|1|1|sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 456.2808532714844 2 456.28166 910.548768 NaN NaN NaN NaN NaN NaN NaN 21.508 1 24.858 24.358 25.358 3.3496 0 0 0 0.40746 1 2417 2417 0.69038 0 1 + 24306 28660 15050 15059 28546 28546 0.08991545936953571 LLTILKKMKQ 10 Unmodified _LLTILKKMKQ_ 0 0 0 nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF nc|ENSG00000213465|P36404-2|ARL2 nc|ENSG00000213465|P36404-2|ARL2 MSMS UPN47_class_I_Rep_1 2 405.9325256347656 3 405.933427 1214.77845 NaN NaN NaN NaN NaN NaN NaN 34.01 1 37.708 37.208 38.208 3.6983 0 0 0 0.53105 1 6064 6064 0.69767 0 1 24307 5591 15051 15060 28547 28547 0.17965216558400243 LLTILKKMKQ 10 Unmodified _LLTILKKMKQ_ 0 0 0 nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF nc|ENSG00000213465|P36404-2|ARL2 nc|ENSG00000213465|P36404-2|ARL2 MSMS UPN47_class_I_Rep_2 3 405.932861328125 3 405.933427 1214.77845 NaN NaN NaN NaN NaN NaN NaN 32.875 1 36.33 35.83 36.83 3.4547 0 0 0 0.53105 1 5753 5753 0.69767 0 1 24308 5591 15051 15060 28548 28548 0.17965216558400243 LLTILKKMKQ 10 Unmodified _LLTILKKMKQ_ 0 0 0 nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF nc|ENSG00000213465|P36404-2|ARL2 nc|ENSG00000213465|P36404-2|ARL2 MSMS UPN47_class_I_Rep_2 3 405.93231201171875 3 405.933427 1214.77845 NaN NaN NaN NaN NaN NaN NaN 34.617 1 38.042 37.542 38.542 3.4253 0 0 0 0.53105 1 6284 6284 0.69767 0 1 24309 5591 15051 15060 28549 28549 0.17965216558400243 LLTKHNGK 8 Unmodified _LLTKHNGK_ 0 0 0 REV__L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|60|3|sense REV__L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|60|3|sense MSMS UPN46_class_I_Rep_3 1 455.7777099609375 2 455.777077 909.5396 NaN NaN NaN NaN NaN NaN NaN 113.55 1 113.55 113.05 114.05 0 0 0 0 0.40625 1 28046 28046 2.3027 0 1 + 24310 29362 15052 15061 28550 28550 0.08121197371281141 LLTLEVSH 8 Unmodified _LLTLEVSH_ 0 0 0 L1MB8_dup16341|chr22:42940882-42941762:-|2.0748584803605223|0.0641156439924806|5.02|151.0|16|2|sense L1MB8_dup16341|chr22:42940882-42941762:-|2.0748584803605223|0.0641156439924806|5.02|151.0|16|2|sense L1MB8_dup16341|chr22:42940882-42941762:-|2.0748584803605223|0.0641156439924806|5.02|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.26318359375 2 456.263468 910.512382 -0.24061 -0.00010978 0.32572 0.00014862 0.085114 3.8835E-05 456.26350685802765 56.965 0.91532 60.137 59.779 60.694 3.1721 174 76 3 0 0 0 0.82752 1 13047 13047 0.79363 0 1 705610 24311 10967 15053 15062 28551 28551 0.05354669040241333 LLTLKNLTN 9 Unmodified _LLTLKNLTN_ 0 0 0 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 MSMS UPN47_class_I_Rep_1 2 515.7745361328125 2 515.318774 1028.623 NaN NaN NaN NaN NaN NaN NaN 67.849 1 71.213 70.713 71.713 3.3646 0 0 0 0.3967 1 16342 16342 1.4819 0 1 24312 3025 15054 15063 28552 28552 0.1098288902846889 LLTLLSLAVS 10 Unmodified _LLTLLSLAVS_ 0 0 0 L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|174|2|anti-sense L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|174|2|anti-sense L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|174|2|anti-sense MSMS UPN47_class_I_Rep_1 2 515.33154296875 2 515.33135 1028.64815 NaN NaN NaN NaN NaN NaN NaN 75.918 1 79.322 78.822 79.822 3.4034 0 0 0 0.53105 1 18764 18764 1.4819 0 1 24313 14927 15055 15064 28553 28553 0.13496943831046337 LLTMERLQQ 9 Unmodified _LLTMERLQQ_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS UPN47_class_I_Rep_3 4 566.3134155273438 2 566.313166 1130.61178 0.50941 0.00028848 -0.51068 -0.00028921 -0.0012776 -7.2351E-07 566.3128376938488 50.513 0.56955 53.739 53.484 54.053 3.2262 44 31 2 0 0 0 0.49026 1 11224 11224 1.6526 0 1 87810 + 24314 18354 15056 15065 28554 28554 0.05169743662690962 LLTMTTCTPL 10 Unmodified _LLTMTTCTPL_ 0 0 0 REV__chr2:68393245-68394111|59|15.75|0.22|6.17|+|1|PLEK,None|1 REV__chr2:68393245-68394111|59|15.75|0.22|6.17|+|1|PLEK,None|1 MULTI-MSMS UPN47_class_I_Rep_1 2 547.7880859375 2 547.285228 1092.5559 0.41598 0.00022766 0.22414 0.00012267 0.64012 0.00035033 547.2853670913502 73.016 0.29584 76.396 76.191 76.486 3.3799 31 17 2 0 0 0 0.51565 1 17921 17921 10.074 0 1 48730 + 24315 17446 15057 15066 28555 28555 0.013327744308526235 LLTNDLLI 8 Unmodified _LLTNDLLI_ 0 0 0 L1MC4_dup6538|chr4:109483789-109484523:-|1.4743736492144723|0.0310955660629083|5.57|151.0|20|3|sense L1MC4_dup6538|chr4:109483789-109484523:-|1.4743736492144723|0.0310955660629083|5.57|151.0|20|3|sense L1MC4_dup6538|chr4:109483789-109484523:-|1.4743736492144723|0.0310955660629083|5.57|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.78143310546875 2 457.781493 913.548434 0.098319 4.5008E-05 0.66032 0.00030228 0.75864 0.00034729 457.78159160698516 57.085 0.56691 60.628 60.422 60.989 3.5427 144 56 3 0 0 0 0.82752 1 12265 12265 24.674 0 1 236670 24316 11518 15058 15067 28556 28556 0.08820126217108282 LLTRSLEKF 9 Unmodified _LLTRSLEKF_ 0 0 0 REV__HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|20|3|sense REV__HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 553.8301391601562 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 82.077 1 85.476 84.976 85.976 3.3984 0 0 0 0.39518 1 20458 20458 1.8442 0.19162 1 + 24317 23647 15059 15068 28557 28557 0.10094577919812764 LLTSGRSILF 10 Unmodified _LLTSGRSILF_ 0 0 0 REV__ENST00000535106.5_1_1:150039487-150039628:+|nuORF REV__ENST00000535106.5_1_1:150039487-150039628:+|nuORF MSMS UPN47_class_I_Rep_2 3 553.8292236328125 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 82.439 1 85.837 85.337 86.337 3.3984 0 0 0 0.53105 1 20549 20549 3.5965 0.31518 1 + 24318 22881 15060 15069 28558 28558 0.10094577919812764 LLTSPIPPPDL 11 Unmodified _LLTSPIPPPDL_ 0 0 0 REV__ENST00000382080.5_1_8:15095780-15095819:-|nuORF REV__ENST00000382080.5_1_8:15095780-15095819:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 581.8406982421875 2 581.839539 1161.66453 0.49127 0.00028584 -0.62304 -0.00036251 -0.13177 -7.6667E-05 581.8391530466788 108.71 0.1716 112.38 112.3 112.47 3.6751 24 18 2 0 0 0 0.59712 1 25730 25730 5.2969 5.2969 1 5175700 + 24319 22065 15061 15070 28559 28559 0.09016024997140448 LLTSRFDYA 9 Unmodified _LLTSRFDYA_ 0 0 0 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 MULTI-MSMS UPN48_class_I_Rep_1 5 543.2842407226562 2 543.284931 1084.55531 0.40072 0.0002177 0.16776 9.1141E-05 0.56848 0.00030885 543.2850584372846 48.912 0.36487 52.436 52.241 52.606 3.5239 35 28 2 0 0 0 0.42249 1 9838 9838 6.7232 0.36906 1 83739 24320 2594 15062 15071 28560 28560 0.016414390976706272 LLTSRFDYA 9 Unmodified _LLTSRFDYA_ 0 0 0 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 MULTI-MSMS UPN48_class_I_Rep_2 6 543.2864990234375 2 543.284931 1084.55531 0.39961 0.0002171 -0.14906 -8.0981E-05 0.25056 0.00013612 543.2847785444277 48.756 0.4416 52.473 52.14 52.582 3.7175 38 32 2 0 0 0 0.42249 1 9784 9784 6.7232 0.51738 1 89404 24321 2594 15062 15071 28561 28561 0.016414390976706272 LLTSSSTRLSL 11 Unmodified _LLTSSSTRLSL_ 0 0 0 AluSc_dup18388|chr9:129931931-129932242:+|1.092852234471562|0.0193175386270695|5.82|151.0|13|1|anti-sense AluSc_dup18388|chr9:129931931-129932242:+|1.092852234471562|0.0193175386270695|5.82|151.0|13|1|anti-sense AluSc_dup18388|chr9:129931931-129932242:+|1.092852234471562|0.0193175386270695|5.82|151.0|13|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.3424072265625 2 589.342978 1176.6714 0.53424 0.00031485 0.032726 1.9287E-05 0.56696 0.00033414 589.3429173038619 83.465 1.1732 86.877 86.276 87.449 3.4116 234 145 2 0 0 0 0.67398 1 20689 20689 1.0715 1.0715 1 166700 24322 202 15063 15072 28562 28562 0.09013337877718186 LLTWIFPP 8 Unmodified _LLTWIFPP_ 0 0 0 REV__nc|ENSG00000132196|P56937-2|HSD17B7 REV__nc|ENSG00000132196|P56937-2|HSD17B7 MSMS UPN48_class_I_Rep_2 6 493.789794921875 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 29.026 1 32.657 32.157 33.157 3.6316 0 0 0 0.40581 1 4071 4071 2.8892 0.58649 1 + 24323 19001 15064 15073 28563 28563 0.07033037804933429 LLTWIYFA 8 Unmodified _LLTWIYFA_ 0 0 0 L1ME2z_dup1349|chr3:121708753-121710480:+|1.1199771577364628|0.0731087841221181|3.94|151.0|112|3|anti-sense L1ME2z_dup1349|chr3:121708753-121710480:+|1.1199771577364628|0.0731087841221181|3.94|151.0|112|3|anti-sense L1ME2z_dup1349|chr3:121708753-121710480:+|1.1199771577364628|0.0731087841221181|3.94|151.0|112|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 513.2864990234375 2 513.786579 1025.5586 0.21705 0.00011152 3.2588 0.0016743 3.4759 0.0017859 513.7885189841479 49.805 0.10875 53.426 53.375 53.484 3.621 7 4 2 0 0 0 0.72333 1 10042 10042 6.3541 0 1 58616 24324 12544 15065 15074 28564 28564 0.04684733942326602 LLTYNKAVAHL 11 Unmodified _LLTYNKAVAHL_ 0 0 0 REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 MULTI-MSMS UPN47_class_I_Rep_3 4 622.3646850585938 2 621.86388 1241.71321 0.46693 0.00029036 -0.51623 -0.00032103 -0.049306 -3.0662E-05 622.364544455302 75.905 0.047722 79.163 79.137 79.185 3.2573 6 3 2 0 0 0 0.65559 1 18856 18856 2.7352 1.0826 1 293180 + 24325 18022 15066 15075 28565 28565 0.10201938356885876 LLVCRLRRLWE 11 Unmodified _LLVCRLRRLWE_ 0 0 0 L1P3_dup2646|chr12:9845175-9850042:-|1.222746642244923|0.1670852435825995|2.87|151.0|187|1|anti-sense;L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|322|2|anti-sense L1P3_dup2646|chr12:9845175-9850042:-|1.222746642244923|0.1670852435825995|2.87|151.0|187|1|anti-sense L1P3_dup2646|chr12:9845175-9850042:-|1.222746642244923|0.1670852435825995|2.87|151.0|187|1|anti-sense MSMS UPN47_class_I_Rep_2 3 486.3098449707031 3 486.290496 1455.84966 NaN NaN NaN NaN NaN NaN NaN 57.943 1 61.234 60.734 61.734 3.2912 0 0 0 0.38417 1 13376 13376 1.3296 0.82369 1 24326 13537 15067 15076 28566 28566 0.1399672931574969 LLVDVSVLI 9 Unmodified _LLVDVSVLI_ 0 0 0 L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|153|2|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|153|2|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|153|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8116455078125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.915 1 71.279 70.779 71.779 3.3646 0 0 0 0.38299 1 16363 16363 4.756 0 1 24327 9675 15068 15077 28567 28567 0.12501272285282994 LLVDVSVLI 9 Unmodified _LLVDVSVLI_ 0 0 0 L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|153|2|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|153|2|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|153|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.81182861328125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 67.419 1 70.927 70.427 71.427 3.5077 0 0 0 0.38299 1 15390 15390 4.756 0 1 24328 9675 15068 15077 28568 28568 0.12501272285282994 LLVFFAAA 8 Unmodified _LLVFFAAA_ 0 0 0 REV__ENSG00000156959|ENST00000287585|LHFPL4 REV__ENSG00000156959|ENST00000287585|LHFPL4 MULTI-SECPEP UPN46_class_I_Rep_3 1 425.7525634765625 2 426.254914 850.495276 0.10934 4.6607E-05 -1.2567 -0.00053569 -1.1474 -0.00048909 426.25433269121623 82.755 0.083069 82.755 82.686 82.769 0 9 8 2 0 0 0 0.72333 1 19608 19608 0.79363 0 1 104850 + 24329 19812 15069 15078 28569 28569 0.0640479322507872 LLVFVQIYI 9 Unmodified _LLVFVQIYI_ 0 0 0 L1MB8_dup3382|chr3:171657519-171658827:+|1.4281674320657989|0.1462603407569014|3.29|151.0|54|1|anti-sense L1MB8_dup3382|chr3:171657519-171658827:+|1.4281674320657989|0.1462603407569014|3.29|151.0|54|1|anti-sense L1MB8_dup3382|chr3:171657519-171658827:+|1.4281674320657989|0.1462603407569014|3.29|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.3447875976562 2 554.344261 1106.67397 0.52957 0.00029356 -0.41329 -0.0002291 0.11628 6.4458E-05 554.3441096688019 73.715 0.13339 77.196 77.1 77.233 3.4812 18 14 2 0 0 0 0.48846 1 17392 17392 1.8442 0.36234 1 60815 24330 10993 15070 15079 28570 28570 0.12489838073315696 LLVGRWLY 8 Unmodified _LLVGRWLY_ 0 0 0 REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF MSMS UPN46_class_I_Rep_3 1 510.38128662109375 2 510.30547 1018.59639 NaN NaN NaN NaN NaN NaN NaN 42.787 1 42.787 42.287 43.287 0 0 0 0 0.40364 1 8499 8499 5.7604 0 1 + 24331 22413 15071 15080 28571 28571 0.08783244927792566 LLVGWSFWM 9 Unmodified _LLVGWSFWM_ 0 0 0 REV__nc|ENSG00000176884|Q05586-2|GRIN1 REV__nc|ENSG00000176884|Q05586-2|GRIN1 MSMS UPN48_class_I_Rep_3 7 569.79052734375 2 569.791338 1137.56812 NaN NaN NaN NaN NaN NaN NaN 30.312 1 34.026 33.526 34.526 3.7146 0 0 0 0.39428 1 4355 4355 2.0598 0 1 + 24332 20598 15072 15081 28572 28572 0.004841789562078702 LLVHATKRGE 10 Unmodified _LLVHATKRGE_ 0 0 0 ENST00000302503.7_1_11:47640451-47647231:-|nuORF ENST00000302503.7_1_11:47640451-47647231:-|nuORF ENST00000302503.7_1_11:47640451-47647231:-|nuORF MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.332747 1122.65094 NaN NaN NaN NaN NaN NaN NaN 39.527 1 39.527 39.027 40.027 0 0 0 0 0.53105 1 7602 7602 3.2813 1.2216 1 24333 6081 15073 15082 28573 28573 0.09452212008568495 LLVHVRRRG 9 Unmodified _LLVHVRRRG_ 0 0 0 ENSG00000090932|ENST00000356433|DLL3;nc|ENSG00000090932|Q9NYJ7|DLL3 ENSG00000090932|ENST00000356433|DLL3 ENSG00000090932|ENST00000356433|DLL3 MSMS UPN48_class_I_Rep_3 7 553.3568725585938 2 553.356891 1104.69923 NaN NaN NaN NaN NaN NaN NaN 57.913 1 61.445 60.945 61.945 3.5317 0 0 0 0.4007 1 12502 12502 0.52476 0 1 24334 1360 15074 15083 28574 28574 0.15106750439099415 LLVIDALTFY 10 Unmodified _LLVIDALTFY_ 0 0 0 REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 584.3374633789062 2 584.336633 1166.65871 0.34177 0.00019971 0.056239 3.2863E-05 0.39801 0.00023257 584.336590430124 68.041 1.1485 71.406 71.035 72.183 3.3646 179 87 3 0 0 0 0.51565 2 16306 16306;16562 10.074 0.6908 1 370210 + 24335 19295 15075 15084 28575;28576 28575 0.08204926485473152 LLVIDALTFY 10 Unmodified _LLVIDALTFY_ 0 0 0 REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 584.3366088867188 2 584.336633 1166.65871 0.44362 0.00025923 -0.0084526 -4.9392E-06 0.43517 0.00025429 584.3365093989219 68.355 0.63041 71.553 71.218 71.849 3.1977 92 42 3 0 0 0 0.56078 1 16504 16504 3.2813 0.28607 1 304260 + 24336 19295 15075 15084 28577 28577 0.08204926485473152 LLVIKMYV 8 Unmodified _LLVIKMYV_ 0 0 0 ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES MSMS UPN47_class_I_Rep_2 3 489.80609130859375 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 66.597 1 69.856 69.356 70.356 3.2588 0 0 0 0.40604 1 16008 16008 2.5775 0 1 24337 3500 15076 15085 28578 28578 0.10866537621382122 LLVIQIRMKQ 10 Unmodified _LLVIQIRMKQ_ 0 0 0 REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|7|2|sense REV__Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|7|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 621.39404296875 2 621.391751 1240.76895 0.66257 0.00041171 1.9684 0.0012231 2.6309 0.0016348 621.3929462638507 100.53 0.067574 100.53 100.48 100.55 0 10 6 2 0 0 0 0.56486 1 24501 24501 0.40072 0.093686 1 111520 + 24338 17351 15077 15086 28579 28579 0.15819448272850423 LLVISGFYTA 10 Unmodified _LLVISGFYTA_ 0 0 0 REV__nc|ENSG00000100979|P55058-3|PLTP REV__nc|ENSG00000100979|P55058-3|PLTP MSMS UPN46_class_I_Rep_3 1 542.307861328125 2 542.307875 1082.6012 NaN NaN NaN NaN NaN NaN NaN 71.775 1 71.775 71.275 72.275 0 0 0 0 0.53105 1 16555 16555 3.2813 0 1 + 24339 18138 15078 15087 28580 28580 0.06320084279923321 LLVISGFYTA 10 Unmodified _LLVISGFYTA_ 0 0 0 REV__nc|ENSG00000100979|P55058-3|PLTP REV__nc|ENSG00000100979|P55058-3|PLTP MULTI-MSMS UPN47_class_I_Rep_1 2 542.3077392578125 2 542.307875 1082.6012 0.38375 0.00020811 -0.18336 -9.9436E-05 0.20039 0.00010867 542.307652301692 65.781 1.0956 69.138 68.708 69.804 3.3576 157 67 3 0 0 0 0.54822 1 15852 15852 5.7319 0 1 679330 + 24340 18138 15078 15087 28581 28581 0.06320084279923321 LLVKRLIYHD 10 Unmodified _LLVKRLIYHD_ 0 0 0 L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|21|2|sense L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|21|2|sense L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 635.3859252929688 2 635.387522 1268.76049 NaN NaN NaN NaN NaN NaN NaN 79.584 1 79.584 79.084 80.084 0 0 0 0 0.53105 1 18702 18702 0.40072 0 1 24341 12915 15079 15088 28582 28582 0.13686217627900987 LLVLAPIEIF 10 Unmodified _LLVLAPIEIF_ 0 0 0 L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.35986328125 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 63.872 1 67.346 66.846 67.846 3.4743 0 0 0 0.53105 1 14394 14394 10.824 6.8795 1 24342 11469 15080 15089 28583 28583 0.14190107244780847 LLVLAPIEIF 10 Unmodified _LLVLAPIEIF_ 0 0 0 L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.3034057617188 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 89.43 1 93.167 92.667 93.667 3.7379 0 0 0 0.53105 1 21307 21307 3.5965 1.9439 1 24343 11469 15080 15089 28584 28584 0.14190107244780847 LLVLAPIEIF 10 Unmodified _LLVLAPIEIF_ 0 0 0 L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.3591918945312 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 63.815 1 67.323 66.823 67.823 3.5083 0 0 0 0.53105 1 14297 14297 10.824 6.8795 1 24344 11469 15080 15089 28585 28585 0.14190107244780847 LLVLLARWKP 10 Unmodified _LLVLLARWKP_ 0 0 0 ENST00000340023.6_1_19:52264477-52271939:+|nuORF ENST00000340023.6_1_19:52264477-52271939:+|nuORF ENST00000340023.6_1_19:52264477-52271939:+|nuORF MSMS UPN46_class_I_Rep_3 1 604.8976440429688 2 604.897526 1207.7805 NaN NaN NaN NaN NaN NaN NaN 79.845 1 79.845 79.345 80.345 0 0 0 0 0.53105 1 18777 18777 1.6526 0 1 24345 6228 15081 15090 28586 28586 0.18492013358491022 LLVLLSTSRT 10 Unmodified _LLVLLSTSRT_ 0 0 0 HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|46|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|46|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|46|2|sense MSMS UPN48_class_I_Rep_1 5 551.843017578125 2 551.845156 1101.67576 NaN NaN NaN NaN NaN NaN NaN 82.575 1 86.151 85.651 86.651 3.5753 0 0 0 0.53105 1 19723 19723 0.35063 0.35063 1 24346 8315 15082 15091 28587 28587 0.1289884709128728 LLVLMCHVIV 10 Unmodified _LLVLMCHVIV_ 0 0 0 REV__L1M4_dup9993|chr9:92707729-92709064:-|2.6952879221473816|0.0657612318651028|5.36|151.0|81|3|anti-sense REV__L1M4_dup9993|chr9:92707729-92709064:-|2.6952879221473816|0.0657612318651028|5.36|151.0|81|3|anti-sense MSMS UPN48_class_I_Rep_1 5 570.3389282226562 2 570.337598 1138.66064 NaN NaN NaN NaN NaN NaN NaN 72.741 1 76.214 75.714 76.714 3.4732 0 0 0 0.53105 1 17093 17093 4.3292 1.0479 1 + 24347 24473 15083 15092 28588 28588 0.0968594069804567 LLVLMLHL 8 Unmodified _LLVLMLHL_ 0 0 0 REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|44|2|sense REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|44|2|sense MSMS UPN47_class_I_Rep_1 2 476.3208923339844 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 61.038 1 64.419 63.919 64.919 3.3815 0 0 0 0.40581 1 14284 14284 2.8892 0 1 + 24348 23778 15084 15093 28589 28589 0.12141957341236775 LLVLMLHL 8 Unmodified _LLVLMLHL_ 0 0 0 REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|44|2|sense REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|44|2|sense MSMS UPN47_class_I_Rep_1 2 476.3208923339844 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 61.181 1 64.563 64.063 65.063 3.3815 0 0 0 0.40581 1 14328 14328 2.8892 0 1 + 24349 23778 15084 15093 28590 28590 0.12141957341236775 LLVLMLHL 8 Unmodified _LLVLMLHL_ 0 0 0 REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|44|2|sense REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|44|2|sense MSMS UPN47_class_I_Rep_1 2 476.3209533691406 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 61.309 1 64.69 64.19 65.19 3.3815 0 0 0 0.40581 1 14368 14368 2.8892 0 1 + 24350 23778 15084 15093 28591 28591 0.12141957341236775 LLVLQLKL 8 Unmodified _LLVLQLKL_ 0 0 0 L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|101|3|anti-sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|101|3|anti-sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|101|3|anti-sense MSMS UPN48_class_I_Rep_2 6 470.3316955566406 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 119.55 1 123.21 122.71 123.71 3.6652 0 0 0 0.40738 1 28691 28691 0.79363 0 1 24351 13105 15085 15094 28592 28592 0.18105872764454034 LLVMRGLF 8 Unmodified _LLVMRGLF_ 0 0 0 REV__L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|107|2|anti-sense REV__L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|107|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 474.3195495605469 2 474.788598 947.562644 0.21955 0.00010424 3.0873 0.0014658 3.3069 0.0015701 474.79062840243625 108.17 0.27966 111.84 111.72 112 3.6746 49 31 2 0 0 0 0.72333 1 25650 25650 5.7604 0 1 1491900 + 24352 29079 15086 15095 28593 28593 0.08676500164403933 LLVNFDFCCH 10 Unmodified _LLVNFDFCCH_ 0 0 0 L1PA7_dup6831|chr8:85184069-85186500:+|1.2884723371868338|0.1410708249736264|3.19|150.0|140|3|anti-sense L1PA7_dup6831|chr8:85184069-85186500:+|1.2884723371868338|0.1410708249736264|3.19|150.0|140|3|anti-sense L1PA7_dup6831|chr8:85184069-85186500:+|1.2884723371868338|0.1410708249736264|3.19|150.0|140|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 605.7723388671875 2 605.772819 1209.53109 0.54135 0.00032793 -0.89833 -0.00054419 -0.35699 -0.00021625 605.7725532428946 50.999 0.8893 54.215 53.9 54.79 3.2163 82 44 3 0 0 0 0.55983 1 11349 11349 3.9444 1.6417 1 197420 24353 14870 15087 15096 28594 28594 -0.06529860651880881 LLVNTHQQ 8 Unmodified _LLVNTHQQ_ 0 0 0 REV__L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|78|1|anti-sense REV__L1MA4_dup7904|chr13:28246304-28248520:-|6.94559216403313|0.0727817280943422|6.58|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 476.8225402832031 2 476.764166 951.513779 NaN NaN NaN NaN NaN NaN NaN 62.153 1 65.412 64.912 65.912 3.2594 0 0 0 0.40604 1 14658 14658 2.5775 0 1 + 24354 25209 15088 15097 28595 28595 0.036083031289877 LLVPARLVLLV 11 Unmodified _LLVPARLVLLV_ 0 0 0 MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|31|1|anti-sense MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|31|1|anti-sense MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 603.4193115234375 2 603.420834 1204.82712 NaN NaN NaN NaN NaN NaN NaN 108.26 1 111.8 111.3 112.3 3.5333 0 0 0 0.38417 1 26241 26241 0.35063 0 1 24355 16101 15089 15098 28596 28596 0.23289453189772757 LLVPAVRLA 9 Unmodified _LLVPAVRLA_ 0 0 0 ENST00000394636.8_1_16:54964782-54965211:+|nuORF ENST00000394636.8_1_16:54964782-54965211:+|nuORF ENST00000394636.8_1_16:54964782-54965211:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 476.3209533691406 2 476.32112 950.627687 0.20355 9.6957E-05 -0.31468 -0.00014989 -0.11112 -5.2929E-05 476.3208254589824 68.049 0.50375 68.049 67.84 68.344 0 70 51 2 0 0 0 0.25207 2 15546 15503;15546 16.942 0 1 709190 24356 6547 15090 15099 28597;28598 28598 0.15039817961894641 LLVPAVRLA 9 Unmodified _LLVPAVRLA_ 0 0 0 ENST00000394636.8_1_16:54964782-54965211:+|nuORF ENST00000394636.8_1_16:54964782-54965211:+|nuORF ENST00000394636.8_1_16:54964782-54965211:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.32086181640625 2 476.32112 950.627687 -0.0073231 -3.4881E-06 -0.2111 -0.00010055 -0.21842 -0.00010404 476.32084362743075 61.644 0.88972 64.81 64.533 65.423 3.1667 129 64 3 0 0 0 0.25207 1 14673 14673 16.942 0 1 297650 24357 6547 15090 15099 28599 28599 0.15039817961894641 LLVPLAAQ 8 Unmodified _LLVPLAAQ_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|76|2|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|76|2|anti-sense MSMS UPN46_class_I_Rep_3 1 412.76446533203125 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 80.988 1 80.988 80.488 81.488 0 0 0 0 0.40738 1 19104 19104 0.79363 0 1 + 24358 32479 15091 15100 28600 28600 0.09792178253792372 LLVPPGLEPW 10 Unmodified _LLVPPGLEPW_ 0 0 0 MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|300|2|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|300|2|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|300|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.8226318359375 2 560.823692 1119.63283 0.047816 2.6816E-05 -0.73834 -0.00041408 -0.69052 -0.00038726 560.8232428038832 19.123 1.0067 22.513 21.997 23.004 3.3898 189 105 2 0 0 0 0.56033 1 1650 1650 3.5965 3.5965 1 99939 24359 16056 15092 15101 28601 28601 0.07780077033862653 LLVPSTSVT 9 Unmodified _LLVPSTSVT_ 0 0 0 REV__nc|ENSG00000163635|O15265-3|ATXN7 REV__nc|ENSG00000163635|O15265-3|ATXN7 MSMS UPN47_class_I_Rep_2 3 458.7709045410156 2 458.771126 915.527698 NaN NaN NaN NaN NaN NaN NaN 41.628 1 44.994 44.494 45.494 3.3655 0 0 0 0.11494 1 8407 8407 21.747 0 1 + 24360 19993 15093 15102 28602 28602 0.06655535837444404 LLVPSTSVT 9 Unmodified _LLVPSTSVT_ 0 0 0 REV__nc|ENSG00000163635|O15265-3|ATXN7 REV__nc|ENSG00000163635|O15265-3|ATXN7 MSMS UPN47_class_I_Rep_3 4 458.771484375 2 458.771126 915.527698 NaN NaN NaN NaN NaN NaN NaN 41.861 1 45.098 44.598 45.598 3.2372 0 0 0 0.11494 1 8532 8532 21.747 0 1 + 24361 19993 15093 15102 28603 28603 0.06655535837444404 LLVQMILL 8 Unmodified _LLVQMILL_ 0 0 0 AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|11|2|anti-sense AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|11|2|anti-sense AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_2 6 471.8079528808594 2 471.806457 941.598361 NaN NaN NaN NaN NaN NaN NaN 40.621 1 44.363 43.863 44.863 3.7413 0 0 0 0.4032 1 7331 7331 6.3541 0 1 24362 269 15094 15103 28604 28604 0.12522537621407537 LLVQMILL 8 Unmodified _LLVQMILL_ 0 0 0 AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|11|2|anti-sense AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|11|2|anti-sense AluSx_dup105538|chr19:14407387-14407654:+|1.799178121940062|0.361182317226112|2.32|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_3 7 471.80810546875 2 471.806457 941.598361 NaN NaN NaN NaN NaN NaN NaN 40.611 1 44.262 43.762 44.762 3.6509 0 0 0 0.4032 1 7243 7243 6.3541 0 1 24363 269 15094 15103 28605 28605 0.12522537621407537 LLVRGPLAL 9 Unmodified _LLVRGPLAL_ 0 0 0 REV__ENSG00000166289|ENST00000436066|PLEKHF1 REV__ENSG00000166289|ENST00000436066|PLEKHF1 MSMS UPN46_class_I_Rep_3 1 476.3066101074219 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 68.523 1 68.523 68.023 69.023 0 0 0 0 0.38478 1 15650 15650 4.3292 0 1 + 24364 20166 15095 15104 28606 28606 0.15039817961883273 LLVRKRRKHQD 11 Unmodified _LLVRKRRKHQD_ 0 0 0 Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|20|2|sense Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|20|2|sense Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 483.78448486328125 3 483.635542 1447.8848 0.27449 0.00013275 -1.8814 -0.00090992 -1.6069 -0.00077717 483.6347333259321 65.168 0.055725 68.647 68.617 68.673 3.4792 5 3 2 0 0 0 22.551 1 14792 14792 0.50596 0.051438 1 38410 24365 33283 15096 15105 28607 28607 0.1787710816793151 LLVRLGMCF 9 Unmodified _LLVRLGMCF_ 0 0 0 ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|2|intron;ENSG00000103226.19,NOMO3,chr16,+,I31.1,16280331,16281238|81|7.02|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I36.1,18430899,18431806|42|7.75|1|intron;ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|1|intron;ENSG00000103226.19,NOMO3,chr16,+,I31.1,16280331,16281238|81|7.02|1|intron;ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|3|intron ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|2|intron ENSG00000185164.14,NOMO2,chr16,-,I27.1,18513434,18514341|65|9.25|2|intron MSMS UPN48_class_I_Rep_1 5 526.2931518554688 2 526.293191 1050.57183 NaN NaN NaN NaN NaN NaN NaN 34.725 1 38.239 37.739 38.739 3.5144 0 0 0 0.40038 1 5591 5591 0.6015 0.076735 1 24366 1650 15097 15106 28608 28608 0.048565254584218565 LLVRSGNPLG 10 Unmodified _LLVRSGNPLG_ 0 0 0 L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|300|2|anti-sense L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|300|2|anti-sense L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|300|2|anti-sense MSMS UPN46_class_I_Rep_3 1 513.3067626953125 2 513.308741 1024.60293 NaN NaN NaN NaN NaN NaN NaN 18.069 1 18.069 17.569 18.569 0 0 0 0 0.53105 1 1519 1519 1.3295 0 1 24367 14655 15098 15107 28609 28609 0.09161138088529697 LLVSLALVSV 10 Unmodified _LLVSLALVSV_ 0 0 0 L1M3_dup950|chr3:14974904-14975940:-|1.1476593071100831|0.0218529791350079|5.71|151.0|78|3|anti-sense L1M3_dup950|chr3:14974904-14975940:-|1.1476593071100831|0.0218529791350079|5.71|151.0|78|3|anti-sense L1M3_dup950|chr3:14974904-14975940:-|1.1476593071100831|0.0218529791350079|5.71|151.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.3338928222656 2 507.333893 1012.65323 0.27214 0.00013807 -0.40024 -0.00020305 -0.1281 -6.4987E-05 507.33377794225856 76.175 0.25586 79.432 79.257 79.513 3.2573 39 24 2 0 0 0 0.40227 1 18936 18936 19.257 0 1 60637 24368 8779 15099 15108 28610 28610 0.14741247693655168 LLVSTFMSVC 10 Unmodified _LLVSTFMSVC_ 0 0 0 REV__L1ME5_dup2670|chr15:65767622-65767993:+|1.423788419616889|0.0127126767300582|6.81|151.0|25|2|anti-sense REV__L1ME5_dup2670|chr15:65767622-65767993:+|1.423788419616889|0.0127126767300582|6.81|151.0|25|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 550.2177734375 2 550.279946 1098.54534 0.49041 0.00026986 2.3018 0.0012666 2.7922 0.0015365 550.2808528145106 93.113 0.14576 96.883 96.816 96.962 3.77 27 20 2 0 0 0 0.84575 1 22153 22153 1.6526 0.96225 1 102720 + 24369 28328 15100 15109 28611 28611 7.917764378362335E-06 LLVTRAYFF 9 Unmodified _LLVTRAYFF_ 0 0 0 L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|61|2|anti-sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|61|2|anti-sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|61|2|anti-sense MSMS UPN47_class_I_Rep_3 4 565.3244018554688 2 565.32386 1128.63317 NaN NaN NaN NaN NaN NaN NaN 18.882 1 22.236 21.736 22.736 3.3545 0 0 0 0.40038 1 1659 1659 0.6015 0 1 24370 9230 15101 15110 28612 28612 0.07399496753691892 LLVTREPL 8 Unmodified _LLVTREPL_ 0 0 0 REV__nc|ENSG00000142405|P59046-4|NLRP12 REV__nc|ENSG00000142405|P59046-4|NLRP12 MULTI-MSMS UPN47_class_I_Rep_2 3 470.7943420410156 2 470.794935 939.575317 -0.32743 -0.00015415 -0.70999 -0.00033426 -1.0374 -0.00048841 470.79477345052027 37.847 1.2517 41.235 40.748 42 3.3879 234 100 3 0 0 0 0.82752 1 7154 7154 2.8892 0 1 469690 + 24371 19403 15102 15111 28613 28613 0.10311234828270699 LLVTSHYVP 9 Unmodified _LLVTSHYVP_ 0 0 0 LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|49|2|anti-sense;LTR13_dup42|chr2:152754873-152755883:+|1.5698023885470092|0.2740275322488474|2.52|151.0|51|2|anti-sense;LTR13_dup182|chr9:3475213-3476329:-|1.1432893667292674|0.0267106122250692|5.42|151.0|57|2|anti-sense;LTR13_dup279|chr12:76472368-76473376:-|1.118901149559041|0.0209230014562314|5.74|151.0|39|1|anti-sense;LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|44|2|anti-sense LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|49|2|anti-sense LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|49|2|anti-sense MSMS UPN47_class_I_Rep_2 3 514.792236328125 2 514.792392 1027.57023 NaN NaN NaN NaN NaN NaN NaN 68.241 1 71.51 71.01 72.01 3.2696 0 0 0 0.38299 1 16503 16503 4.756 0.81161 1 24372 15559 15103 15112 28614 28614 0.057549309656678815 LLVVPLVQ 8 Unmodified _LLVVPLVQ_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79962158203125 2 440.796946 879.57934 0.14599 6.4351E-05 2.4527 0.0010811 2.5987 0.0011455 440.79933758377575 80.541 0.3045 80.541 80.329 80.633 0 57 32 2 0 0 0 0.82752 1 18931 18931 0.79363 0 1 97713 24373 23577 15104 15113 28615 28615 0.1347332432200119 LLVVPLVQ 8 Unmodified _LLVVPLVQ_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29791259765625 2 440.796946 879.57934 0.040097 1.7675E-05 2.4445 0.0010775 2.4846 0.0010952 440.79950502814063 74.198 0.40675 77.592 77.363 77.77 3.3937 58 38 2 0 0 0 0.82752 1 18228 18228 0.79363 0 1 125460 24374 23577 15104 15113 28616 28616 0.1347332432200119 LLVVPLVQ 8 Unmodified _LLVVPLVQ_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.2975158691406 2 440.796946 879.57934 -0.65987 -0.00029087 2.7072 0.0011933 2.0473 0.00090246 440.7996375393973 41.989 0.99158 45.35 44.702 45.694 3.3611 107 77 2 0 0 0 0.82752 2 8494 8494;8572 0.69038 0 1 73799 24375 23577 15104 15113 28617;28618 28617 0.1347332432200119 LLWAATRD 8 Unmodified _LLWAATRD_ 0 0 0 REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS UPN47_class_I_Rep_3 4 473.2607727050781 2 473.261259 944.507966 -0.82473 -0.00039031 -0.18735 -8.8668E-05 -1.0121 -0.00047898 473.2609507998776 16.375 0.75493 19.737 19.521 20.276 3.3619 114 88 2 0 0 0 0.82752 1 1071 1071 2.8892 0.58649 1 59969 + 24376 19205 15105 15114 28619 28619 0.03349204617313717 LLWAPPRP 8 Unmodified _LLWAPPRP_ 0 0 0 LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|34|3|sense LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|34|3|sense LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 474.95147705078125 2 475.284537 948.554522 NaN NaN NaN NaN NaN NaN NaN 102.84 1 106.62 106.12 107.12 3.776 0 0 0 0.40604 1 24302 24302 2.5775 0.27475 1 24377 15538 15106 15115 28620 28620 0.07818689239263676 LLWERKVVLL 10 Unmodified _LLWERKVVLL_ 0 0 0 L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|17|2|sense L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|17|2|sense L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|17|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 634.377685546875 2 634.908091 1267.80163 0.43229 0.00027446 0.18682 0.00011861 0.6191 0.00039307 634.907940228497 105.19 0.12065 108.81 108.76 108.88 3.6247 24 16 2 0 0 0 0.84575 1 25336 25336 0.35063 0 1 1017000 24378 12045 15107 15116 28621 28621 0.17843978667360716 LLWFFPSL 8 Unmodified _LLWFFPSL_ 0 0 0 L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|316|3|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|316|3|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|316|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.2906494140625 2 511.789121 1021.56369 0.16537 8.4632E-05 -1.2535 -0.00064154 -1.0882 -0.00055691 511.78498424617766 52.521 0.60373 56.079 55.955 56.559 3.5585 106 36 4 0 0 0 0.82752 1 11753 11753 9.3474 0 1 169740 24379 14576 15108 15117 28622 28622 0.053770378049534884 LLWFLAPY 8 Unmodified _LLWFLAPY_ 0 0 0 REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|126|2|anti-sense REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|126|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.78485107421875 2 511.789121 1021.56369 0.19399 9.9283E-05 -4.3712 -0.0022372 -4.1773 -0.0021379 512.289421116337 52.88 0.51781 56.206 55.942 56.459 3.3266 54 33 2 0 0 0 0.82752 1 11835 11835 11.114 0 1 145430 + 24380 24583 15109 15118 28623 28623 0.05377037804930751 LLWFLTTR 8 Unmodified _LLWFLTTR_ 0 0 0 REV__L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|104|3|anti-sense REV__L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|104|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.3111572265625 2 525.310752 1048.60695 0.48959 0.00025719 0.040041 2.1034E-05 0.52963 0.00027822 525.310728176252 75.083 0.25547 78.649 78.509 78.765 3.5659 58 28 3 0 0 0 0.82752 1 17645 17645 9.3474 0 1 675700 + 24381 29338 15110 15119 28624 28624 0.08459227582193307 LLWFLTTR 8 Unmodified _LLWFLTTR_ 0 0 0 REV__L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|104|3|anti-sense REV__L1PA16_dup11933|chr14:69431560-69433141:-|1.565499013880989|0.0432685943191222|5.18|151.0|104|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 525.3111572265625 2 525.310752 1048.60695 0.48855 0.00025664 -0.034224 -1.7978E-05 0.45432 0.00023866 525.3106697884708 75.302 0.24274 78.868 78.745 78.987 3.5659 43 25 2 0 0 0 0.72333 1 17645 17645 9.3474 0 1 86893 + 24382 29338 15110 15119 28625 28625 0.08459227582193307 LLWFVAIVW 9 Unmodified _LLWFVAIVW_ 0 0 0 REV__L1MB8_dup6759|chr7:129854643-129855189:+|1.744585362131287|0.156801414182403|3.48|151.0|33|2|anti-sense REV__L1MB8_dup6759|chr7:129854643-129855189:+|1.744585362131287|0.156801414182403|3.48|151.0|33|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 574.3414916992188 2 573.839146 1145.66374 -0.11848 -6.7989E-05 -0.82789 -0.00047507 -0.94637 -0.00054306 573.8386137211326 12.77 0.3543 12.77 12.699 13.054 0 49 28 2 0 0 0 0.50015 1 252 252 0.6015 0 1 144780 + 24383 26428 15111 15120 28626 28626 0.09673275138720783 LLWGKRKL 8 Unmodified _LLWGKRKL_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS UPN47_class_I_Rep_3 4 507.333984375 2 507.334562 1012.65457 0.27326 0.00013864 -1.5203 -0.00077129 -1.247 -0.00063266 507.3337049436268 76.788 0.16058 80.057 79.971 80.132 3.269 24 16 2 0 0 0 0.82752 1 19109 19109 0.69038 0 1 107950 + 24384 18606 15112 15121 28627 28627 0.1487492657306575 LLWGPRRELV 10 Unmodified _LLWGPRRELV_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MSMS UPN48_class_I_Rep_2 6 619.8690795898438 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.88 1 91.608 91.108 92.108 3.7279 0 0 0 0.53105 1 20912 20912 1.6526 0.17072 1 24385 5824 15113 15122 28628 28628 0.1201706431365892 LLWHFINQRK 10 Unmodified _LLWHFINQRK_ 0 0 0 HERVIP10F-int_dup99|chr6:87479191-87480702:-|1.5647381387946897|0.0520528939667114|4.91|151.0|41|3|sense HERVIP10F-int_dup99|chr6:87479191-87480702:-|1.5647381387946897|0.0520528939667114|4.91|151.0|41|3|sense HERVIP10F-int_dup99|chr6:87479191-87480702:-|1.5647381387946897|0.0520528939667114|4.91|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.26287841796875 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.56444 1 12977 12977 0.69767 0.24315 1 500210 24386 8212 15114 15123 28629 28629 0.10424155579221406 LLWKAKRV 8 Unmodified _LLWKAKRV_ 0 0 0 REV__MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|14|3|sense REV__MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|14|3|sense MSMS UPN47_class_I_Rep_1 2 507.33416748046875 2 507.334562 1012.65457 NaN NaN NaN NaN NaN NaN NaN 76.432 1 79.847 79.347 80.347 3.4149 0 0 0 0.40604 1 18915 18915 2.5775 0 1 + 24387 31738 15115 15124 28630 28630 0.14874926573077119 LLWLGFVK 8 Unmodified _LLWLGFVK_ 0 0 0 L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense MSMS UPN48_class_I_Rep_1 5 488.3063659667969 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 62.821 1 66.284 65.784 66.784 3.4625 0 0 0 0.40738 1 14091 14091 0.79363 0 1 24388 8596 15116 15125 28631 28631 0.10701030558902858 LLWLGFVK 8 Unmodified _LLWLGFVK_ 0 0 0 L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.30645751953125 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 61.22 1 64.699 64.199 65.199 3.4785 0 0 0 0.40738 1 13582 13582 0.79363 0 1 24389 8596 15116 15125 28632 28632 0.10701030558902858 LLWLGFVK 8 Unmodified _LLWLGFVK_ 0 0 0 L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|102|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.30645751953125 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 61.76 1 65.234 64.734 65.734 3.4738 0 0 0 0.40738 1 13746 13746 0.79363 0 1 24390 8596 15116 15125 28633 28633 0.10701030558902858 LLWLLSLLSL 10 Unmodified _LLWLLSLLSL_ 0 0 0 L1MC4a_dup7624|chr13:49648403-49649244:+|1.6830460164247447|0.0357815884116989|5.56|151.0|44|2|anti-sense L1MC4a_dup7624|chr13:49648403-49649244:+|1.6830460164247447|0.0357815884116989|5.56|151.0|44|2|anti-sense L1MC4a_dup7624|chr13:49648403-49649244:+|1.6830460164247447|0.0357815884116989|5.56|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 585.8784790039062 2 585.878468 1169.74238 NaN NaN NaN NaN NaN NaN NaN 45.117 1 48.361 47.861 48.861 3.2441 0 0 0 0.53105 1 9528 9528 1.6526 0 1 24391 11612 15117 15126 28634 28634 0.16430082653209865 LLWLPRMLR 9 Unmodified _LLWLPRMLR_ 0 0 0 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 MULTI-MSMS UPN47_class_I_Rep_2 3 599.3676147460938 2 599.368079 1196.7216 0.048399 2.9009E-05 0.1097 6.5752E-05 0.1581 9.4761E-05 599.3676626005036 13.074 0.18704 16.462 16.388 16.575 3.388 19 15 2 0 0 0 0.50015 1 230 230 0.6015 0 1 34511 + 24392 32095 15118 15127 28635 28635 0.131112137925129 LLWLPRMLR 9 Unmodified _LLWLPRMLR_ 0 0 0 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 599.368079 1196.7216 -0.10955 -6.566E-05 -0.76085 -0.00045603 -0.8704 -0.00052169 599.3677987420123 13.031 0.12838 16.488 16.425 16.553 3.457 0.012954 -0.0003343 NaN 0.6015 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 55690 + 24393 32095 15118 15127 0.131112137925129 LLWMKKVYF 9 Unmodified _LLWMKKVYF_ 0 0 0 REV__Tigger1_dup11903|chr21:43893111-43894066:-|1.3036498215440622|0.0115753850952845|6.82|150.0|51|3|anti-sense REV__Tigger1_dup11903|chr21:43893111-43894066:-|1.3036498215440622|0.0115753850952845|6.82|150.0|51|3|anti-sense MSMS UPN48_class_I_Rep_2 6 614.3509521484375 2 614.351563 1226.68857 NaN NaN NaN NaN NaN NaN NaN 29.92 1 33.552 33.052 34.052 3.6316 0 0 0 0.40038 1 4312 4312 0.6015 0.076735 1 + 24394 32368 15119 15128 28636 28636 0.08429586949819168 LLWPDTNP 8 Unmodified _LLWPDTNP_ 0 0 0 REV__nc|ENSG00000166783|Q9Y4F3-4|MARF1 REV__nc|ENSG00000166783|Q9Y4F3-4|MARF1 MSMS UPN47_class_I_Rep_2 3 478.2469787597656 2 478.247818 954.481082 NaN NaN NaN NaN NaN NaN NaN 12.758 1 16.146 15.646 16.646 3.388 0 0 0 0.40738 1 146 146 0.79363 0 1 + 24395 20187 15120 15129 28637 28637 0.0020209600612588474 LLWPMLKHL 9 Unmodified _LLWPMLKHL_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|233|3|anti-sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|233|3|anti-sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|233|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 575.8433837890625 2 575.843905 1149.67326 0.49338 0.00028411 -1.4035 -0.00080818 -0.91009 -0.00052407 575.8429732508388 85.343 0.11641 85.343 85.312 85.429 0 13 8 2 0 0 0 0.50015 1 20361 20361 0.6015 0 1 151480 24396 8454 15121 15130 28638 28638 0.10440720152610083 LLWPMLKHL 9 Unmodified _LLWPMLKHL_ 0 0 0 HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|233|3|anti-sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|233|3|anti-sense HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|233|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 575.843905 1149.67326 0.49338 0.00028411 -1.4035 -0.00080818 -0.91009 -0.00052407 575.8429732508388 85.343 0.11641 85.343 85.312 85.429 0 0 0 NaN 0.6015 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 151480 24397 8454 15121 15130 0.10440720152610083 LLWPQTRL 8 Unmodified _LLWPQTRL_ 0 0 0 REV__L1PB4_dup2932|chr7:8035228-8038110:+|1.6947298308557943|0.0413179801005504|5.36|151.0|1|1|sense REV__L1PB4_dup2932|chr7:8035228-8038110:+|1.6947298308557943|0.0413179801005504|5.36|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.3109741210938 2 513.808377 1025.6022 0.26612 0.00013673 -1.5776 -0.00081059 -1.3115 -0.00067386 513.8067410818514 62.035 0.55691 65.403 65.126 65.683 3.3681 75 41 3 0 0 0 0.82752 1 14584 14584 5.7604 0 1 138930 + 24398 30582 15122 15131 28639 28639 0.0904234343945518 LLWPRRRWL 9 Unmodified _LLWPRRRWL_ 0 0 0 REV__chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 MSMS UPN46_class_I_Rep_3 1 648.3966064453125 2 648.396016 1294.77748 NaN NaN NaN NaN NaN NaN NaN 92.487 1 92.487 91.987 92.987 0 0 0 0 0.4007 1 22384 22384 0.52476 0.12405 1 + 24399 17431 15123 15132 28640 28640 0.14188183024361933 LLWPRRRWL 9 Unmodified _LLWPRRRWL_ 0 0 0 REV__chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 MSMS UPN46_class_I_Rep_3 1 648.3934326171875 2 648.396016 1294.77748 NaN NaN NaN NaN NaN NaN NaN 104.93 1 104.93 104.43 105.43 0 0 0 0 0.4007 1 25602 25602 0.52476 0.066424 1 + 24400 17431 15123 15132 28641 28641 0.14188183024361933 LLWPRRRWL 9 Unmodified _LLWPRRRWL_ 0 0 0 REV__chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 MSMS UPN48_class_I_Rep_1 5 648.4166870117188 2 648.396016 1294.77748 NaN NaN NaN NaN NaN NaN NaN 106.91 1 110.54 110.04 111.04 3.6299 0 0 0 0.4007 1 25753 25753 0.52476 0.12405 1 + 24401 17431 15123 15132 28642 28642 0.14188183024361933 LLWSALTLI 9 Unmodified _LLWSALTLI_ 0 0 0 REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|93|3|sense REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|93|3|sense MSMS UPN47_class_I_Rep_1 2 515.3193359375 2 515.320786 1028.62702 NaN NaN NaN NaN NaN NaN NaN 67.749 1 71.11 70.61 71.61 3.3611 0 0 0 0.39518 1 16311 16311 1.8442 0 1 + 24402 23616 15124 15133 28643 28643 0.11384978522164602 LLWSLRTG 8 Unmodified _LLWSLRTG_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MULTI-MSMS UPN47_class_I_Rep_1 2 473.2796630859375 2 473.279452 944.544351 0.026033 1.2321E-05 0.81165 0.00038414 0.83769 0.00039646 473.2795526950366 52.435 0.67522 55.993 55.697 56.372 3.5585 72 52 2 0 0 0 0.82752 1 11703 11703 15.847 0 1 263000 + 24403 20569 15125 15134 28644 28644 0.06986081514048692 LLWSLRTG 8 Unmodified _LLWSLRTG_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MULTI-MSMS UPN47_class_I_Rep_2 3 473.27960205078125 2 473.279452 944.544351 0.16995 8.0434E-05 0.81559 0.000386 0.98554 0.00046644 473.2796541687933 52.685 0.58634 56.019 55.837 56.424 3.3332 70 44 2 0 0 0 0.82752 1 11787 11787 16.942 0 1 261880 + 24404 20569 15125 15134 28645 28645 0.06986081514048692 LLWSLRTG 8 Unmodified _LLWSLRTG_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MULTI-MSMS UPN47_class_I_Rep_3 4 473.2795715332031 2 473.279452 944.544351 0.064957 3.0743E-05 0.67156 0.00031783 0.73651 0.00034858 473.27954944981593 52.908 0.86106 56.103 55.803 56.664 3.1948 81 56 2 0 0 0 0.82752 1 11951 11951 11.64 0 1 202320 + 24405 20569 15125 15134 28646 28646 0.06986081514048692 LLWSLRTG 8 Unmodified _LLWSLRTG_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 473.279452 944.544351 0.026033 1.2321E-05 0.81165 0.00038414 0.83769 0.00039646 473.2795526950366 52.435 0.67522 55.993 55.697 56.372 3.5585 -0.045114 3.937E-05 NaN 15.847 72 52 2 NaN NaN NaN NaN 0 NaN NaN 0 263000 + 24406 20569 15125 15134 0.06986081514048692 LLWSLRTG 8 Unmodified _LLWSLRTG_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 473.279452 944.544351 0.16995 8.0434E-05 0.81559 0.000386 0.98554 0.00046644 473.2796541687933 52.685 0.58634 56.019 55.837 56.424 3.3332 -0.019575 4.3095E-05 NaN 15.847 70 44 2 NaN NaN NaN NaN 0 NaN NaN 0 261880 + 24407 20569 15125 15134 0.06986081514048692 LLWTFVQSF 9 Unmodified _LLWTFVQSF_ 0 0 0 nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A nc|ENSG00000148408|Q00975-2|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B MSMS UPN48_class_I_Rep_2 6 570.806396484375 2 570.808042 1139.60153 NaN NaN NaN NaN NaN NaN NaN 56.057 1 59.59 59.09 60.09 3.5333 0 0 0 0.27207 1 12004 12004 12.241 1.4167 1 24408 3507 15126 15135 28647 28647 0.03731503999733832 LLWVLMIS 8 Unmodified _LLWVLMIS_ 0 0 0 REV__L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|283|3|anti-sense REV__L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|283|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.7904968261719 2 487.790807 973.56706 0.14956 7.2954E-05 -0.69242 -0.00033775 -0.54285 -0.0002648 487.790387601901 75.361 1.338 78.764 78.441 79.779 3.4034 169 123 2 0 0 0 0.82752 1 18605 18605 2.5775 0 1 203010 + 24409 30620 15127 15136 28648 28648 0.07921964587285402 LLWVPGCICYS 11 Unmodified _LLWVPGCICYS_ 0 0 0 ENST00000375754.8_1_9:93657936-93658308:+|nuORF ENST00000375754.8_1_9:93657936-93658308:+|nuORF ENST00000375754.8_1_9:93657936-93658308:+|nuORF MSMS UPN48_class_I_Rep_3 7 627.3071899414062 2 627.306495 1252.59844 NaN NaN NaN NaN NaN NaN NaN 57.793 1 61.324 60.824 61.824 3.5317 0 0 0 0.38417 1 12465 12465 1.3295 0.13619 1 24410 6444 15128 15137 28649 28649 -0.0177583044091989 LLWWKRPRG 9 Unmodified _LLWWKRPRG_ 0 0 0 REV__nc|ENSG00000149948|P52926-4|HMGA2 REV__nc|ENSG00000149948|P52926-4|HMGA2 MSMS UPN46_class_I_Rep_3 1 606.361083984375 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 39.614 1 39.614 39.114 40.114 0 0 0 0 0.4007 1 7625 7625 0.52476 0 1 + 24411 32013 15129 15138 28650 28650 0.11180518724631838 LLWYLPAF 8 Unmodified _LLWYLPAF_ 0 0 0 HAL1_dup4045|chr3:179174559-179175722:-|2.3425255534636618|0.0584220944643551|5.33|151.0|67|2|anti-sense HAL1_dup4045|chr3:179174559-179175722:-|2.3425255534636618|0.0584220944643551|5.33|151.0|67|2|anti-sense HAL1_dup4045|chr3:179174559-179175722:-|2.3425255534636618|0.0584220944643551|5.33|151.0|67|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.2903442382812 2 511.789121 1021.56369 0.16537 8.4632E-05 -1.2535 -0.00064154 -1.0882 -0.00055691 511.78498424617766 52.521 0.60373 56.079 55.955 56.559 3.5585 106 36 4 0 0 0 0.82752 1 11794 11794 11.114 0 1 169740 24412 7881 15130 15139 28651 28651 0.05377037804930751 LLYACSQLPY 10 Unmodified _LLYACSQLPY_ 0 0 0 REV__L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|47|1|anti-sense REV__L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 585.797607421875 2 585.796817 1169.57908 NaN NaN NaN NaN NaN NaN NaN 44.526 1 48.221 47.721 48.721 3.6951 0 0 0 0.53105 1 9265 9265 7.2892 2.5332 1 + 24413 27961 15131 15140 28652 28652 0.0010753653984920675 LLYARDIPR 9 Unmodified _LLYARDIPR_ 0 0 0 ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1 ENST00000485535.5_1_3:48445895-48454598:-|nuORF ENST00000485535.5_1_3:48445895-48454598:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 558.8280029296875 2 558.82984 1115.64513 -0.17351 -9.6962E-05 -3.9073 -0.0021835 -4.0808 -0.0022805 558.8278395550341 12.725 0.12156 12.725 12.685 12.807 0 12 7 2 0 0 0 0.46869 1 189 189 3.9444 0.3479 1 35311 24414 4071 15132 15141 28653 28653 0.09193113496894512 LLYDKLYLV 9 Unmodified _LLYDKLYLV_ 0 0 0 REV__HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|6|1|sense REV__HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 570.338134765625 2 570.339175 1138.6638 NaN NaN NaN NaN NaN NaN NaN 72.635 1 76.2 75.7 76.7 3.5645 0 0 0 0.2088 1 17012 17012 15.847 0 1 + 24415 23908 15133 15142 28654 28654 0.10001230348075296 LLYEMLVGEC 10 Unmodified _LLYEMLVGEC_ 0 0 0 PKN3|p.E810Rfs*50|1|0.86|ENSG00000160447|chr9:128720252-128720252|C/-|frameshift_variant;ENSG00000160447|ENST00000291906|PKN3 PKN3|p.E810Rfs*50|1|0.86|ENSG00000160447|chr9:128720252-128720252|C/-|frameshift_variant PKN3|p.E810Rfs*50|1|0.86|ENSG00000160447|chr9:128720252-128720252|C/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 585.2955322265625 2 585.282686 1168.55082 0.16295 9.5373E-05 0.39933 0.00023372 0.56228 0.00032909 585.2827732215254 44.016 0.88158 47.374 47.001 47.882 3.358 116 49 3 0 0 0 0.53654 1 9266 9266 7.2892 1.0834 1 262490 24416 3875 15134 15143 28655 28655 -0.026715294317682492 LLYESPERY 9 Unmodified _LLYESPERY_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MULTI-MSMS UPN47_class_I_Rep_1 2 585.2957763671875 2 585.295496 1168.57644 0.071346 4.1758E-05 0.28051 0.00016418 0.35185 0.00020594 585.29538694986 44.133 0.67313 47.828 47.521 48.194 3.6951 91 44 3 0 0 0 0.033731 2 9188 9188;9228 55.503 15.553 1 223230 24417 4367 15135 15144 28656;28657 28656 -0.001105955934690428 LLYESPERY 9 Unmodified _LLYESPERY_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MULTI-MSMS UPN47_class_I_Rep_2 3 585.2950439453125 2 585.295496 1168.57644 0.18489 0.00010822 -0.12261 -7.1761E-05 0.062289 3.6458E-05 585.2953668468194 44.501 0.82366 47.857 47.539 48.362 3.3556 105 55 2 0 0 0 0.074399 3 9306 9306;9391;9404 39.95 9.3132 1 231770 24418 4367 15135 15144 28658;28659;28660 28658 -0.001105955934690428 LLYESPERY 9 Unmodified _LLYESPERY_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 585.2957153320312 2 585.295496 1168.57644 0.20356 0.00011914 0.16332 9.559E-05 0.36688 0.00021473 585.2953639421501 44.616 0.73883 47.86 47.524 48.263 3.2441 88 43 3 0 0 0 0.12096 1 9438 9438 29.841 7.1043 1 244270 24419 4367 15135 15144 28661 28661 -0.001105955934690428 LLYESPERY 9 Unmodified _LLYESPERY_ 0 0 0 ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1 ENSG00000168394|ENST00000354258|TAP1 ENSG00000168394|ENST00000354258|TAP1 MSMS UPN47_class_I_Rep_3 4 585.295654296875 2 585.295496 1168.57644 NaN NaN NaN NaN NaN NaN NaN 45.027 1 48.271 47.771 48.771 3.2441 0 0 0 0.28608 1 9500 9500 11.495 2.1116 1 24420 4367 15135 15144 28662 28662 -0.001105955934690428 LLYFAWLLKS 10 Unmodified _LLYFAWLLKS_ 0 0 0 L1PB1_dup3334|chr4:102736695-102737473:+|1.319715654471154|0.0474513230611346|4.8|151.0|32|2|anti-sense L1PB1_dup3334|chr4:102736695-102737473:+|1.319715654471154|0.0474513230611346|4.8|151.0|32|2|anti-sense L1PB1_dup3334|chr4:102736695-102737473:+|1.319715654471154|0.0474513230611346|4.8|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_2 6 627.3679809570312 2 627.368267 1252.72198 NaN NaN NaN NaN NaN NaN NaN 62.411 1 65.885 65.385 66.385 3.4738 0 0 0 0.53105 1 13946 13946 3.5965 0 1 24421 15087 15136 15145 28663 28663 0.10572911993358503 LLYFFFNQ 8 Unmodified _LLYFFFNQ_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|107|2|anti-sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|107|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.28125 2 546.28166 1090.54877 NaN NaN NaN NaN NaN NaN NaN 36.657 1 40.056 39.556 40.556 3.3988 0 0 0 0.40604 1 6901 6901 2.5775 0 1 + 24422 30333 15137 15146 28664 28664 0.007115459369288146 LLYHREQE 8 Unmodified _LLYHREQE_ 0 0 0 ENST00000506919.1_1_4:146560261-146567442:+|nuORF;ENSG00000151611|ENST00000649156|MMAA ENST00000506919.1_1_4:146560261-146567442:+|nuORF ENST00000506919.1_1_4:146560261-146567442:+|nuORF MSMS UPN46_class_I_Rep_3 1 544.2796020507812 2 544.28018 1086.54581 NaN NaN NaN NaN NaN NaN NaN 93.53 1 93.53 93.03 94.03 0 0 0 0 0.40738 1 22669 22669 0.79363 0 1 24423 3595 15138 15147 28665 28665 0.005996708121529082 LLYIIFLHDH 10 Unmodified _LLYIIFLHDH_ 0 0 0 REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF MSMS UPN46_class_I_Rep_3 1 642.3609619140625 2 642.360973 1282.70739 NaN NaN NaN NaN NaN NaN NaN 110.33 1 110.33 109.83 110.83 0 0 0 0 0.53105 1 27169 27169 1.6526 0 1 + 24424 23194 15139 15148 28666 28666 0.07734839845215902 LLYILFHHLD 10 Unmodified _LLYILFHHLD_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 642.3609008789062 2 642.360973 1282.70739 0.57893 0.00037188 0.44437 0.00028545 1.0233 0.00065733 642.3615067999413 106.36 0.41211 110.07 110.01 110.42 3.7088 97 59 2 0 0 0 0.56309 2 26141 26141;26152 1.6526 0 1 355470 24425 13812 15140 15149 28667;28668 28667 0.07734839845238639 LLYILFHHLD 10 Unmodified _LLYILFHHLD_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense MSMS UPN48_class_I_Rep_3 7 642.3613891601562 2 642.360973 1282.70739 NaN NaN NaN NaN NaN NaN NaN 106.41 1 110.1 109.6 110.6 3.6899 0 0 0 0.53105 1 25094 25094 1.6526 0 1 24426 13812 15140 15149 28669 28669 0.07734839845238639 LLYILFHHLD 10 Unmodified _LLYILFHHLD_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|156|3|anti-sense MSMS UPN48_class_I_Rep_3 7 642.3619384765625 2 642.360973 1282.70739 NaN NaN NaN NaN NaN NaN NaN 106.42 1 110.11 109.61 110.61 3.6899 0 0 0 0.53105 1 25097 25097 1.6526 0 1 24427 13812 15140 15149 28670 28670 0.07734839845238639 LLYIVLFLVFL 11 Unmodified _LLYIVLFLVFL_ 0 0 0 REV__ENSG00000198678|ENST00000328207|OR5BS1P REV__ENSG00000198678|ENST00000328207|OR5BS1P MULTI-MSMS UPN48_class_I_Rep_3 7 451.9588317871094 3 451.624587 1351.85193 0.089958 4.0627E-05 -0.33127 -0.00014961 -0.24131 -0.00010898 451.95871558738355 46.496 0.4062 50.133 49.978 50.384 3.6363 36 23 2 0 0 0 0.68024 1 9059 9059 0.50596 0 1 111370 + 24428 21138 15141 15150 28671 28671 0.19008088272494206 LLYKKTLF 8 Unmodified _LLYKKTLF_ 0 0 0 REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|132|2|anti-sense REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|132|2|anti-sense MSMS UPN48_class_I_Rep_3 7 513.3228149414062 2 513.323328 1024.6321 NaN NaN NaN NaN NaN NaN NaN 62.483 1 65.994 65.494 66.494 3.5104 0 0 0 0.40581 1 13891 13891 2.8892 0 1 + 24429 28639 15142 15151 28672 28672 0.12077282384802857 LLYKNLELT 9 Unmodified _LLYKNLELT_ 0 0 0 nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A;nc|ENSG00000186642|O00408-5|PDE2A nc|ENSG00000186642|O00408-6|PDE2A nc|ENSG00000186642|O00408-6|PDE2A MULTI-MSMS UPN48_class_I_Rep_3 7 553.8255615234375 2 553.826432 1105.63831 0.43667 0.00024184 -0.081454 -4.5112E-05 0.35521 0.00019673 553.8263283548616 66.873 0.73435 70.381 70.044 70.778 3.5077 86 48 3 0 0 0 0.43153 1 15327 15327 6.2058 0 1 287320 24430 5161 15143 15152 28673 28673 0.08971755825632499 LLYKSPSFA 9 Unmodified _LLYKSPSFA_ 0 0 0 L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|33|1|anti-sense L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|33|1|anti-sense L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2867431640625 2 513.286943 1024.55933 0.27416 0.00014072 0.056529 2.9015E-05 0.33069 0.00016974 513.2868245908635 49.464 0.38894 53.16 53.075 53.464 3.6954 32 23 2 0 0 0 0.40174 1 10051 10051 7.9102 0 1 107980 24431 12485 15144 15153 28674 28674 0.04803528591378381 LLYKSPSFA 9 Unmodified _LLYKSPSFA_ 0 0 0 L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|33|1|anti-sense L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|33|1|anti-sense L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2864990234375 2 513.286943 1024.55933 0.21472 0.00011021 -0.25194 -0.00012932 -0.037221 -1.9105E-05 513.2868156686156 49.642 0.53752 53.271 52.989 53.526 3.6291 49 33 2 0 0 0 0.40174 1 10042 10042 7.9102 0 1 85910 24432 12485 15144 15153 28675 28675 0.04803528591378381 LLYKYKQKPK 10 Unmodified _LLYKYKQKPK_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MULTI-SECPEP UPN48_class_I_Rep_1 5 437.2672424316406 3 436.939458 1307.79654 -0.049523 -2.1639E-05 1.2127 0.00052987 1.1632 0.00050823 436.9396142370507 49.633 0.38642 53.158 52.828 53.214 3.5246 27 21 2 0 0 0 0.84575 1 10064 10064 1.7423 1.6194 1 108020 24433 4962 15145 15154 28676 28676 0.15495674804719783 LLYKYKQKPK 10 Unmodified _LLYKYKQKPK_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MULTI-MSMS UPN48_class_I_Rep_3 7 437.26739501953125 3 436.939458 1307.79654 0.02506 1.095E-05 1.1544 0.00050438 1.1794 0.00051533 436.93942828828443 50.942 0.36852 54.552 54.294 54.662 3.6105 29 20 2 0 0 0 0.56296 1 10418 10418 1.7423 0.28716 1 112010 24434 4962 15145 15154 28677 28677 0.15495674804719783 LLYKYKQKPK 10 Unmodified _LLYKYKQKPK_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MULTI-MATCH UPN48_class_I_Rep_1 5 3 436.939458 1307.79654 -0.038122 -1.6657E-05 1.4898 0.00065094 1.4516 0.00063428 436.9396513543667 51.029 0.29526 54.554 54.381 54.677 3.5246 0.019718 0.00049581 NaN 1.7423 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 71581 24435 4962 15145 15154 0.15495674804719783 LLYLCLYPY 9 Unmodified _LLYLCLYPY_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|286|3|anti-sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|286|3|anti-sense MSMS UPN48_class_I_Rep_1 5 580.7940673828125 2 580.806654 1159.59875 NaN NaN NaN NaN NaN NaN NaN 58.817 1 62.304 61.804 62.804 3.487 0 0 0 0.381 1 12868 12868 5.2307 0.47466 1 + 24436 24955 15146 15155 28678 28678 0.025339125505752236 LLYLFILY 8 Unmodified _LLYLFILY_ 0 0 0 ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF ENST00000523744.2_2_8:17924585-17924894:-|nuORF MSMS UPN47_class_I_Rep_3 4 529.3223266601562 2 529.320254 1056.62596 NaN NaN NaN NaN NaN NaN NaN 65.055 1 68.234 67.734 68.734 3.1795 0 0 0 0.4032 1 15599 15599 6.3541 0 1 24437 7246 15147 15156 28679 28679 0.09990764153303644 LLYLMLPLI 9 Unmodified _LLYLMLPLI_ 0 0 0 MER1B_dup4738|chr17:9341986-9342323:-|1.570658435926907|0.0154936909248406|6.66|151.0|19|3|anti-sense MER1B_dup4738|chr17:9341986-9342323:-|1.570658435926907|0.0154936909248406|6.66|151.0|19|3|anti-sense MER1B_dup4738|chr17:9341986-9342323:-|1.570658435926907|0.0154936909248406|6.66|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_2 3 544.84521484375 2 544.843039 1087.67153 NaN NaN NaN NaN NaN NaN NaN 66.324 1 69.582 69.082 70.082 3.2588 0 0 0 0.39326 1 15927 15927 2.3027 0 1 24438 15818 15148 15157 28680 28680 0.13119666344027792 LLYLNGHAL 9 Unmodified _LLYLNGHAL_ 0 0 0 REV__chr4:75931304-75933010|35|15.23|0.94|4.02|-|2|TE_info:AluSz,AluSz_dup23989,Alu,SINE,donor,+,75933010,75933149|NAAA,None|2 REV__chr4:75931304-75933010|35|15.23|0.94|4.02|-|2|TE_info:AluSz,AluSz_dup23989,Alu,SINE,donor,+,75933010,75933149|NAAA,None|2 MULTI-MSMS UPN47_class_I_Rep_3 4 507.291259765625 2 507.292559 1012.57057 0.20544 0.00010422 -0.29493 -0.00014962 -0.089494 -4.54E-05 507.29230438673454 61.763 0.62902 64.929 64.781 65.41 3.1667 62 45 2 0 0 0 0.32219 1 14683 14683 12.532 0 1 144350 + 24439 17452 15149 15158 28681 28681 0.06478350685517853 LLYLSKSALT 10 Unmodified _LLYLSKSALT_ 0 0 0 MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|110|3|anti-sense MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|110|3|anti-sense MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|110|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.8482055664062 2 554.834257 1107.65396 NaN NaN NaN NaN NaN NaN NaN 73.449 1 76.686 76.186 77.186 3.2363 0 0 0 0.53105 1 18139 18139 10.074 0 1 24440 15939 15150 15159 28682 28682 0.10444042342692228 LLYLVRLA 8 Unmodified _LLYLVRLA_ 0 0 0 HERVL74-int_dup285|chr15:30859604-30860654:+|2.9833215543925715|0.0061195723400556|8.93|150.0|32|3|sense HERVL74-int_dup285|chr15:30859604-30860654:+|2.9833215543925715|0.0061195723400556|8.93|150.0|32|3|sense HERVL74-int_dup285|chr15:30859604-30860654:+|2.9833215543925715|0.0061195723400556|8.93|150.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.8154296875 2 480.81567 959.616788 -0.049235 -2.3673E-05 -0.23578 -0.00011337 -0.28501 -0.00013704 480.8154532975436 48.955 0.8968 52.614 52.123 53.019 3.6592 127 61 3 0 0 0 0.82752 1 10676 10676 5.7604 0 1 158850 24441 8403 15151 15160 28683 28683 0.1353641558760046 LLYPFILN 8 Unmodified _LLYPFILN_ 0 0 0 L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|78|1|anti-sense L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|78|1|anti-sense L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|78|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.77374267578125 2 496.794404 991.574254 0.29561 0.00014686 0.78587 0.00039041 1.0815 0.00053727 496.79497465518773 41.278 0.052898 41.278 41.243 41.296 0 6 4 2 0 0 0 0.72333 1 8074 8074 2.8892 0 1 47272 24442 14324 15152 15161 28684 28684 0.0781302045937764 LLYPLPIGR 9 Unmodified _LLYPLPIGR_ 0 0 0 LTR10D_dup156|chr19:10751811-10752309:-|1.4732973061447878|0.0185438179080226|6.31|151.0|28|3|anti-sense LTR10D_dup156|chr19:10751811-10752309:-|1.4732973061447878|0.0185438179080226|6.31|151.0|28|3|anti-sense LTR10D_dup156|chr19:10751811-10752309:-|1.4732973061447878|0.0185438179080226|6.31|151.0|28|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 521.3272094726562 2 521.326402 1040.63825 0.38225 0.00019928 1.9118 0.00099669 2.2941 0.001196 521.3275115781975 108.81 0.13545 112.35 112.33 112.47 3.5382 19 13 2 0 0 0 0.46434 1 26704 26704 4.3292 0 1 3541700 24443 15518 15153 15162 28685 28685 0.11955800616328816 LLYQLLTFI 9 Unmodified _LLYQLLTFI_ 0 0 0 REV__Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|23|2|sense REV__Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.3414916992188 2 562.341718 1122.66888 0.48297 0.00027159 -0.064331 -3.6176E-05 0.41864 0.00023542 562.8430700178777 72.722 0.32092 76.195 76.164 76.484 3.4732 34 20 2 0 0 0 0.1249 3 17135 17091;17135;17147 29.082 0 1 252270 + 24444 32332 15154 15163 28686;28687;28688 28687 0.11245534210684127 LLYQLLTFI 9 Unmodified _LLYQLLTFI_ 0 0 0 REV__Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|23|2|sense REV__Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.3413696289062 2 562.341718 1122.66888 0.48509 0.00027278 -0.25621 -0.00014408 0.22887 0.0001287 562.3415925052395 72.751 0.28844 76.316 76.235 76.524 3.5645 34 22 2 0 0 0 0.21527 1 17063 17063 19.257 0 1 132930 + 24445 32332 15154 15163 28689 28689 0.11245534210684127 LLYQLLTFI 9 Unmodified _LLYQLLTFI_ 0 0 0 REV__Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|23|2|sense REV__Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.3414916992188 2 562.341718 1122.66888 0.48076 0.00027035 -0.25262 -0.00014206 0.22813 0.00012829 562.3415231536394 72.655 0.58189 76.192 75.912 76.494 3.5373 69 46 2 0 0 0 0.21527 1 16976 16976 19.257 0 1 185790 + 24446 32332 15154 15163 28690 28690 0.11245534210684127 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3444213867188 2 554.344261 1106.67397 0.39445 0.00021866 -0.15556 -8.6234E-05 0.23889 0.00013243 554.3441106318645 72.324 0.50998 75.704 75.418 75.928 3.3799 92 36 3 0 0 0 0.09884 2 17733 17652;17733 34.102 0 1 260500 + 24447 29714 15155 15164 28691;28692 28692 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.8471069335938 2 554.344261 1106.67397 0.39804 0.00022065 -0.2465 -0.00013665 0.15153 8.4002E-05 554.3439622578519 72.864 0.468 76.244 76.082 76.55 3.3799 48 30 2 0 0 0 0.17468 2 17884 17811;17884 23.148 0 1 121730 + 24448 29714 15155 15164 28693;28694 28694 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.3445434570312 2 554.344261 1106.67397 0.43091 0.00023887 -0.18122 -0.00010046 0.24969 0.00013841 554.3440264006841 72.637 1.0064 75.934 75.622 76.629 3.2971 168 85 3 0 0 0 0.12799 4 17789 17789;17864;17907;17945 28.487 0 1 305930 + 24449 29714 15155 15164 28695;28696;28697;28698 28695 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.3446655273438 2 554.344261 1106.67397 0.45012 0.00024952 -0.20031 -0.00011104 0.24981 0.00013848 554.3439888990407 72.642 0.5573 75.869 75.554 76.111 3.2271 89 47 3 0 0 0 0.12799 2 17964 17846;17964 28.487 0 1 172050 + 24450 29714 15155 15164 28699;28700 28700 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 554.3446655273438 2 554.344261 1106.67397 NaN NaN NaN NaN NaN NaN NaN 73.002 1 76.229 75.729 76.729 3.2271 0 0 0 0.081393 1 18003 18003 28.487 0 1 + 24451 29714 15155 15164 28701 28701 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 554.34423828125 2 554.344261 1106.67397 NaN NaN NaN NaN NaN NaN NaN 73.129 1 76.356 75.856 76.856 3.2271 0 0 0 0.081393 1 18041 18041 28.487 0 1 + 24452 29714 15155 15164 28702 28702 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.3443603515625 2 554.344261 1106.67397 0.5298 0.00029369 -0.22034 -0.00012215 0.30945 0.00017154 554.3440048909098 72.8 0.77842 76.273 76.105 76.883 3.4732 157 62 4 0 0 0 0.12799 1 17200 17200 28.487 0 1 1744500 + 24453 29714 15155 15164 28703 28703 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.3443603515625 2 554.344261 1106.67397 0.48729 0.00027013 -0.13014 -7.214E-05 0.35715 0.00019799 554.344069942107 72.576 0.51668 76.141 75.682 76.198 3.5645 146 47 4 0 0 0 0.066041 3 16924 16889;16924;16960 42.095 0 1 1545600 + 24454 29714 15155 15164 28704;28705;28706 28705 0.12489838073315696 LLYQLVVFI 9 Unmodified _LLYQLVVFI_ 0 0 0 REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense REV__L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.3445434570312 2 554.344261 1106.67397 0.48745 0.00027022 -0.1604 -8.8916E-05 0.32705 0.0001813 554.3440561799297 72.716 0.61456 76.281 76.176 76.791 3.5645 154 57 4 0 0 0 0.12799 1 17154 17154 28.487 0 1 1491800 + 24455 29714 15155 15164 28707 28707 0.12489838073315696 LLYRGPSVMC 10 Unmodified _LLYRGPSVMC_ 0 0 0 REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF MSMS UPN48_class_I_Rep_1 5 569.788818359375 2 569.791012 1137.56747 NaN NaN NaN NaN NaN NaN NaN 35.904 1 39.414 38.914 39.914 3.5101 0 0 0 0.53105 1 5933 5933 1.3295 0.5359 1 + 24456 21466 15156 15165 28708 28708 0.004190162448594492 LLYRLRCQ 8 Unmodified _LLYRLRCQ_ 0 0 0 REV__ENST00000486510.1_1_3:51981724-51982493:+|nuORF REV__ENST00000486510.1_1_3:51981724-51982493:+|nuORF MSMS UPN46_class_I_Rep_3 1 532.8073120117188 2 532.805311 1063.59607 NaN NaN NaN NaN NaN NaN NaN 57.976 1 57.976 57.476 58.476 0 0 0 0 0.4032 1 12735 12735 6.3541 0 1 + 24457 17649 15157 15166 28709 28709 0.06681501936304812 LLYRRYAR 8 Unmodified _LLYRRYAR_ 0 0 0 REV__ENSG00000136531|ENST00000375437|SCN2A REV__ENSG00000136531|ENST00000375437|SCN2A MSMS UPN48_class_I_Rep_1 5 555.8306274414062 2 555.830175 1109.6458 NaN NaN NaN NaN NaN NaN NaN 113.2 1 116.83 116.33 117.33 3.6314 0 0 0 0.40746 1 27495 27495 0.69038 0 1 + 24458 19188 15158 15167 28710 28710 0.0953595293658509 LLYSRLAPPPP 11 Unmodified _LLYSRLAPPPP_ 0 0 0 ENST00000494101.1_1_16:30680055-30680963:+|nuORF;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS ENST00000494101.1_1_16:30680055-30680963:+|nuORF ENST00000494101.1_1_16:30680055-30680963:+|nuORF MSMS UPN48_class_I_Rep_3 7 408.57720947265625 3 408.576408 1222.70739 NaN NaN NaN NaN NaN NaN NaN 80.762 1 84.425 83.925 84.925 3.6635 0 0 0 0.38417 1 19110 19110 0.50596 0 1 24459 3742 15159 15168 28711 28711 0.10494839845227943 LLYVFLWYAYL 11 Unmodified _LLYVFLWYAYL_ 0 0 0 REV__L1MB3_dup431|chr1:51384638-51386068:+|4.2293825285929|0.0424367274529568|6.64|151.0|77|2|anti-sense REV__L1MB3_dup431|chr1:51384638-51386068:+|4.2293825285929|0.0424367274529568|6.64|151.0|77|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 488.6044006347656 3 488.603963 1462.79006 0.29006 0.00014172 -0.61301 -0.00029952 -0.32295 -0.0001578 488.603576861391 110.77 0.083443 110.77 110.73 110.81 0 14 7 3 0 0 0 0.68024 1 27289 27289 0.50596 0 1 61730 + 24460 25890 15160 15169 28712 28712 0.07717736853396673 LLYVQLVLF 9 Unmodified _LLYVQLVLF_ 0 0 0 L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 554.3441162109375 2 554.344261 1106.67397 0.39642 0.00021976 -0.35509 -0.00019684 0.041337 2.2915E-05 554.3440881998719 79.42 0.48701 79.42 79.139 79.626 0 58 47 2 0 0 0 0.32219 1 18648 18648 12.532 0 1 173780 24461 11696 15161 15170 28713 28713 0.12489838073315696 LLYVQLVLF 9 Unmodified _LLYVQLVLF_ 0 0 0 L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 554.34423828125 2 554.344261 1106.67397 0.3973 0.00022024 -0.41308 -0.00022899 -0.01578 -8.7473E-06 554.343982412429 79.715 0.040543 79.715 79.685 79.726 0 5 3 2 0 0 0 0.46434 1 18742 18742 4.3292 0 1 183690 24462 11696 15161 15170 28714 28714 0.12489838073315696 LLYVQLVLF 9 Unmodified _LLYVQLVLF_ 0 0 0 L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.3438720703125 2 554.344261 1106.67397 NaN NaN NaN NaN NaN NaN NaN 73.374 1 76.61 76.11 77.11 3.2363 0 0 0 0.35339 1 18116 18116 7.9102 0 1 24463 11696 15161 15170 28715 28715 0.12489838073315696 LLYVQLVLF 9 Unmodified _LLYVQLVLF_ 0 0 0 L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense L1MC5_dup7545|chr9:6472407-6473632:+|2.067931137626287|0.0190188796379834|6.76|150.0|94|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.344970703125 2 554.344261 1106.67397 0.48729 0.00027013 -0.13014 -7.214E-05 0.35715 0.00019799 554.344069942107 72.576 0.51668 76.141 75.682 76.198 3.5645 146 47 4 0 0 0 0.40174 1 16874 16874 7.9102 0 1 1545600 24464 11696 15161 15170 28716 28716 0.12489838073315696 LLYWLHIY 8 Unmodified _LLYWLHIY_ 0 0 0 L1PA7_dup5557|chr6:118833885-118838156:-|3.572678605156628|0.0589852586195627|5.92|151.0|215|2|anti-sense;L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|117|2|anti-sense;L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|292|3|anti-sense;L1PA6_dup127|chr1:85921433-85926818:+|1.0872451561309626|0.0098369327813827|6.79|150.0|205|1|anti-sense;L1PA5_dup2597|chr4:37938537-37942537:-|1.4621979598235575|0.0849168927667193|4.11|151.0|204|2|anti-sense;L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|341|3|anti-sense L1PA7_dup5557|chr6:118833885-118838156:-|3.572678605156628|0.0589852586195627|5.92|151.0|215|2|anti-sense L1PA7_dup5557|chr6:118833885-118838156:-|3.572678605156628|0.0589852586195627|5.92|151.0|215|2|anti-sense MSMS UPN46_class_I_Rep_3 1 560.816162109375 2 560.813128 1119.6117 NaN NaN NaN NaN NaN NaN NaN 53.08 1 53.08 52.58 53.58 0 0 0 0 0.37152 1 11395 11395 17.087 0 1 24465 14434 15162 15171 28717 28717 0.05668111725003655 LLYYCIHY 8 Unmodified _LLYYCIHY_ 0 0 0 REV__L1MCa_dup6748|chr18:9372518-9373258:+|1.196195089495108|0.0272512606946507|5.46|151.0|50|2|anti-sense REV__L1MCa_dup6748|chr18:9372518-9373258:+|1.196195089495108|0.0272512606946507|5.46|151.0|50|2|anti-sense MSMS UPN47_class_I_Rep_2 3 544.2681274414062 2 544.267696 1086.52084 NaN NaN NaN NaN NaN NaN NaN 113.24 1 116.75 116.25 117.25 3.5171 0 0 0 0.40738 1 27535 27535 0.79363 0 1 + 24466 27224 15163 15172 28718 28718 -0.0189610031477514 LLYYKKFN 8 Unmodified _LLYYKKFN_ 0 0 0 REV__L1M5_dup12333|chr3:196919838-196920775:-|3.0108427136881497|0.2034100332321337|3.89|151.0|42|1|anti-sense REV__L1M5_dup12333|chr3:196919838-196920775:-|3.0108427136881497|0.2034100332321337|3.89|151.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.8126831054688 2 544.810585 1087.60662 NaN NaN NaN NaN NaN NaN NaN 23.898 1 27.464 26.964 27.964 3.5655 0 0 0 0.40738 1 2560 2560 0.79363 0 1 + 24467 24613 15164 15173 28719 28719 0.06631807862390815 LLYYVNLLL 9 Unmodified _LLYYVNLLL_ 0 0 0 ENSG00000105851|ENST00000496166|PIK3CG ENSG00000105851|ENST00000496166|PIK3CG ENSG00000105851|ENST00000496166|PIK3CG MULTI-MSMS UPN48_class_I_Rep_2 6 562.3425903320312 2 562.341718 1122.66888 0.48499 0.00027273 0.073151 4.1136E-05 0.55814 0.00031386 562.3418069633365 72.59 0.34725 76.154 75.896 76.243 3.5645 40 31 2 0 0 0 0.25207 1 17017 17017 16.942 0 1 91330 24468 1764 15165 15174 28720 28720 0.11245534210706865 LLYYVNLLL 9 Unmodified _LLYYVNLLL_ 0 0 0 ENSG00000105851|ENST00000496166|PIK3CG ENSG00000105851|ENST00000496166|PIK3CG ENSG00000105851|ENST00000496166|PIK3CG MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 562.341718 1122.66888 0.48332 0.00027179 0.73223 0.00041176 1.2156 0.00068355 562.8433382687674 72.636 0.11089 76.109 76.034 76.145 3.4732 -0.022358 0.00039754 NaN 16.942 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 63360 24469 1764 15165 15174 0.11245534210706865 LMAFLGKM 8 Unmodified _LMAFLGKM_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MSMS UPN48_class_I_Rep_2 6 455.74932861328125 2 455.748085 909.481616 NaN NaN NaN NaN NaN NaN NaN 21.249 1 24.897 24.397 25.397 3.648 0 0 0 0.40738 1 1974 1974 0.79363 0 1 24470 16841 15166 15175 28721 28721 0.02325476130010884 LMAPSKLYFG 10 Unmodified _LMAPSKLYFG_ 0 0 0 REV__Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|118|3|anti-sense REV__Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|118|3|anti-sense MSMS UPN48_class_I_Rep_3 7 563.8036499023438 2 563.801903 1125.58925 NaN NaN NaN NaN NaN NaN NaN 35.567 1 39.233 38.733 39.733 3.6667 0 0 0 0.53105 1 5784 5784 3.5965 0.60125 1 + 24471 32377 15167 15176 28722 28722 0.03148144265060182 LMASMSIVKA 10 Unmodified _LMASMSIVKA_ 0 0 0 ENSG00000186090|ENST00000428798|HTR3D;nc|ENSG00000186090|Q70Z44|HTR3D ENSG00000186090|ENST00000428798|HTR3D ENSG00000186090|ENST00000428798|HTR3D MULTI-MSMS UPN48_class_I_Rep_1 5 525.7900390625 2 525.787938 1049.56132 0.38008 0.00019984 3.8171 0.002007 4.1972 0.0022068 525.7896396801946 27.181 0.047361 30.744 30.73 30.778 3.5629 6 4 2 0 0 0 0.56374 1 3463 3463 1.1933 0 1 68802 24472 5139 15168 15177 28723 28723 0.03852498013338845 LMCYDVAKR 9 Unmodified _LMCYDVAKR_ 0 0 0 REV__L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|39|1|anti-sense REV__L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|39|1|anti-sense MSMS UPN46_class_I_Rep_3 1 549.777587890625 2 549.775362 1097.53617 NaN NaN NaN NaN NaN NaN NaN 76.582 1 76.582 76.082 77.082 0 0 0 0 0.39518 1 17872 17872 1.8442 0 1 + 24473 28583 15169 15178 28724 28724 -0.008695567892573308 LMCYKAKTFQ 10 Unmodified _LMCYKAKTFQ_ 0 0 0 ENSG00000110002|ENST00000456829|VWA5A ENSG00000110002|ENST00000456829|VWA5A ENSG00000110002|ENST00000456829|VWA5A MSMS UPN48_class_I_Rep_3 7 616.81103515625 2 616.811944 1231.60934 NaN NaN NaN NaN NaN NaN NaN 57.348 1 60.879 60.379 61.379 3.5317 0 0 0 0.53105 1 12328 12328 4.897 0.56777 1 24474 1918 15170 15179 28725 28725 0.0027957193335623742 LMDYSFYHY 9 Unmodified _LMDYSFYHY_ 0 0 0 L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|101|3|anti-sense L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|101|3|anti-sense L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|101|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 619.7635498046875 2 619.762975 1237.5114 0.1651 0.00010233 1.4161 0.00087767 1.5812 0.00097999 619.7635807157401 43.771 0.53284 47.013 46.805 47.338 3.2419 49 30 2 0 0 0 0.48643 1 9095 9095 2.0598 0 1 68832 24475 10911 15171 15180 28726 28726 -0.09785913390965106 LMEVTVYRR 9 Unmodified _LMEVTVYRR_ 0 0 0 ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB ENSG00000136235|ENST00000258733|GPNMB ENSG00000136235|ENST00000258733|GPNMB MSMS UPN47_class_I_Rep_1 2 583.8226318359375 2 583.821158 1165.62776 NaN NaN NaN NaN NaN NaN NaN 46.394 1 50.094 49.594 50.594 3.6999 0 0 0 0.39428 1 9835 9835 2.0598 0.21551 1 24476 2956 15172 15181 28727 28727 0.05157449899593303 LMFFALLALR 10 Unmodified _LMFFALLALR_ 0 0 0 REV__HAL1M8_dup17|chr1:45648390-45648720:-|1.6792140716735684|0.1601192604404281|3.39|151.0|18|2|anti-sense REV__HAL1M8_dup17|chr1:45648390-45648720:-|1.6792140716735684|0.1601192604404281|3.39|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_1 5 597.8563842773438 2 597.857012 1193.69947 NaN NaN NaN NaN NaN NaN NaN 85.71 1 89.316 88.816 89.816 3.6059 0 0 0 0.53105 1 20511 20511 3.2813 0 1 + 24477 23467 15173 15182 28728 28728 0.11036989324088609 LMFFALLALR 10 Unmodified _LMFFALLALR_ 0 0 0 REV__HAL1M8_dup17|chr1:45648390-45648720:-|1.6792140716735684|0.1601192604404281|3.39|151.0|18|2|anti-sense REV__HAL1M8_dup17|chr1:45648390-45648720:-|1.6792140716735684|0.1601192604404281|3.39|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.856201171875 2 597.857012 1193.69947 0.48377 0.00028922 -1.0557 -0.00063117 -0.57195 -0.00034195 597.8562131074215 85.705 0.33176 89.41 89.3 89.631 3.7058 51 34 2 0 0 0 0.56078 1 20395 20395 3.2813 0 1 194770 + 24478 23467 15173 15182 28729 28729 0.11036989324088609 LMFFALLALR 10 Unmodified _LMFFALLALR_ 0 0 0 REV__HAL1M8_dup17|chr1:45648390-45648720:-|1.6792140716735684|0.1601192604404281|3.39|151.0|18|2|anti-sense REV__HAL1M8_dup17|chr1:45648390-45648720:-|1.6792140716735684|0.1601192604404281|3.39|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_3 7 597.8558349609375 2 597.857012 1193.69947 NaN NaN NaN NaN NaN NaN NaN 85.892 1 89.662 89.162 90.162 3.7701 0 0 0 0.53105 1 20384 20384 3.2813 0 1 + 24479 23467 15173 15182 28730 28730 0.11036989324088609 LMFFLKLFL 9 Unmodified _LMFFLKLFL_ 0 0 0 L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|82|3|anti-sense L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|82|3|anti-sense L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|82|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3508911132812 2 586.351031 1170.68751 0.51933 0.00030451 -0.081539 -4.781E-05 0.43779 0.0002567 586.3510033150944 64.713 0.47765 68.167 67.845 68.323 3.4541 52 36 2 0 0 0 0.48643 1 14687 14687 2.0598 0 1 216350 24480 8921 15174 15183 28731 28731 0.10899372580888667 LMFHVEPL 8 Unmodified _LMFHVEPL_ 0 0 0 REV__Tigger19b_dup218|chr1:174021132-174021248:-|1.005017449112951|0.0128816382059363|6.29|151.0|10|2|anti-sense REV__Tigger19b_dup218|chr1:174021132-174021248:-|1.005017449112951|0.0128816382059363|6.29|151.0|10|2|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2634582519531 2 493.262413 984.510274 NaN NaN NaN NaN NaN NaN NaN 64.203 1 67.459 66.959 67.959 3.2556 0 0 0 0.40404 1 15279 15279 5.2307 0 1 + 24481 32618 15175 15184 28732 28732 0.017399170307839995 LMFLHEGY 8 Unmodified _LMFLHEGY_ 0 0 0 REV__ENSG00000130935|ENST00000253247|NOL11 REV__ENSG00000130935|ENST00000253247|NOL11 MSMS UPN46_class_I_Rep_3 1 505.4459228515625 2 505.244221 1008.47389 NaN NaN NaN NaN NaN NaN NaN 37.183 1 37.183 36.683 37.683 0 0 0 0 0.39408 1 6965 6965 10.183 0.10947 1 + 24482 18957 15176 15185 28733 28733 -0.030009598659262338 LMFRVPGLF 9 Unmodified _LMFRVPGLF_ 0 0 0 REV__L1PB2_dup158|chr1:212763266-212764570:+|1.3580908134851146|0.0335146760461966|5.34|151.0|85|3|anti-sense REV__L1PB2_dup158|chr1:212763266-212764570:+|1.3580908134851146|0.0335146760461966|5.34|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_2 6 540.292236328125 2 540.307155 1078.59976 NaN NaN NaN NaN NaN NaN NaN 66.673 1 70.16 69.66 70.66 3.4866 0 0 0 0.34056 1 15251 15251 8.5933 0 1 + 24483 30522 15177 15186 28734 28734 0.06360171710139184 LMFRVPGLF 9 Unmodified _LMFRVPGLF_ 0 0 0 REV__L1PB2_dup158|chr1:212763266-212764570:+|1.3580908134851146|0.0335146760461966|5.34|151.0|85|3|anti-sense REV__L1PB2_dup158|chr1:212763266-212764570:+|1.3580908134851146|0.0335146760461966|5.34|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_3 7 540.292236328125 2 540.307155 1078.59976 NaN NaN NaN NaN NaN NaN NaN 66.51 1 70.018 69.518 70.518 3.5077 0 0 0 0.34056 1 15112 15112 8.5933 0 1 + 24484 30522 15177 15186 28735 28735 0.06360171710139184 LMFWRAKW 8 Unmodified _LMFWRAKW_ 0 0 0 REV__ENST00000444527.2_1_8:56362086-56362449:-|nuORF REV__ENST00000444527.2_1_8:56362086-56362449:-|nuORF MSMS UPN47_class_I_Rep_1 2 569.3051147460938 2 569.304947 1136.59534 NaN NaN NaN NaN NaN NaN NaN 26.281 1 30.043 29.543 30.543 3.7624 0 0 0 0.40738 1 3738 3738 0.79363 0 1 + 24485 22349 15178 15187 28736 28736 0.03250707287224941 LMHHCWKT 8 Unmodified _LMHHCWKT_ 0 0 0 REV__Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|174|3|anti-sense REV__Tigger1_dup8261|chr10:96927796-96930215:-|2.81233259322114|0.0608630404756171|5.53|151.0|174|3|anti-sense MSMS UPN47_class_I_Rep_1 2 528.249267578125 2 528.249314 1054.48408 NaN NaN NaN NaN NaN NaN NaN 119.1 1 122.71 122.21 123.21 3.6036 0 0 0 0.40738 1 29582 29582 0.79363 0 1 + 24486 32542 15179 15188 28737 28737 -0.04098675412342345 LMHLQNRN 8 Unmodified _LMHLQNRN_ 0 0 0 REV__ENST00000456008.2_1_10:98917340-98945578:-|nuORF REV__ENST00000456008.2_1_10:98917340-98945578:-|nuORF MSMS UPN47_class_I_Rep_3 4 513.7340087890625 2 513.269093 1024.52363 NaN NaN NaN NaN NaN NaN NaN 81.418 1 84.741 84.241 85.241 3.3231 0 0 0 0.40738 1 20374 20374 0.79363 0 1 + 24487 20921 15180 15189 28738 28738 0.012351678627283036 LMHYIWII 8 Unmodified _LMHYIWII_ 0 0 0 REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 544.8020629882812 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 20.233 1 23.845 23.345 24.345 3.6118 0 0 0 0.40738 1 1993 1993 0.79363 0 1 + 24488 26040 15181 15190 28739 28739 0.048567693358791075 LMHYIWII 8 Unmodified _LMHYIWII_ 0 0 0 REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_2 6 544.8024291992188 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 19.456 1 23.105 22.605 23.605 3.6497 0 0 0 0.40738 1 1486 1486 0.79363 0 1 + 24489 26040 15181 15190 28740 28740 0.048567693358791075 LMHYIWII 8 Unmodified _LMHYIWII_ 0 0 0 REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_2 6 544.8018798828125 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 21.176 1 24.824 24.324 25.324 3.648 0 0 0 0.40738 1 1954 1954 0.79363 0 1 + 24490 26040 15181 15190 28741 28741 0.048567693358791075 LMHYIWII 8 Unmodified _LMHYIWII_ 0 0 0 REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense REV__L1MB5_dup171|chr1:35408782-35409597:-|1.9669813061311925|0.1445387305941832|3.77|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 544.8023681640625 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 19.218 1 22.806 22.306 23.306 3.5874 0 0 0 0.40738 1 1413 1413 0.79363 0 1 + 24491 26040 15181 15190 28742 28742 0.048567693358791075 LMIAGGFKVW 10 Unmodified _LMIAGGFKVW_ 0 0 0 THE1D_dup9496|chr12:66341636-66341973:+|1.250958117902036|0.1315823783477197|3.25|151.0|8|2|sense THE1D_dup9496|chr12:66341636-66341973:+|1.250958117902036|0.1315823783477197|3.25|151.0|8|2|sense THE1D_dup9496|chr12:66341636-66341973:+|1.250958117902036|0.1315823783477197|3.25|151.0|8|2|sense MSMS UPN48_class_I_Rep_1 5 561.3107299804688 2 561.312438 1120.61032 NaN NaN NaN NaN NaN NaN NaN 63.048 1 66.51 66.01 67.01 3.4625 0 0 0 0.53105 1 14161 14161 1.6526 0.17072 1 24492 32951 15182 15191 28743 28743 0.05484154364580718 LMIISIRP 8 Unmodified _LMIISIRP_ 0 0 0 REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|59|1|anti-sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|59|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7951354980469 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 27.95 1 31.716 31.216 32.216 3.7662 0 0 0 0.40604 1 4235 4235 2.5775 0 1 + 24493 26855 15183 15192 28744 28744 0.1000848281881872 LMIMFHFLL 9 Unmodified _LMIMFHFLL_ 0 0 0 REV__L1ME4b_dup13362|chr10:87917099-87917636:-|1.1796277739003815|0.0313243920812317|5.23|150.0|24|1|anti-sense REV__L1ME4b_dup13362|chr10:87917099-87917636:-|1.1796277739003815|0.0313243920812317|5.23|150.0|24|1|anti-sense MSMS UPN48_class_I_Rep_2 6 582.8169555664062 2 582.819041 1163.62353 NaN NaN NaN NaN NaN NaN NaN 69.403 1 72.925 72.425 73.425 3.5216 0 0 0 0.381 1 16076 16076 5.2307 1.2863 1 + 24494 28257 15184 15193 28745 28745 0.04826269152340501 LMIRHFRL 8 Unmodified _LMIRHFRL_ 0 0 0 ENSG00000174498|ENST00000327987|IGDCC3 ENSG00000174498|ENST00000327987|IGDCC3 ENSG00000174498|ENST00000327987|IGDCC3 MSMS UPN48_class_I_Rep_1 5 543.3004760742188 2 543.323671 1084.63279 NaN NaN NaN NaN NaN NaN NaN 35.774 1 39.284 38.784 39.784 3.5101 0 0 0 0.40404 1 5896 5896 5.2307 0 1 24495 4685 15185 15194 28746 28746 0.09385798552875713 LMITVPIG 8 Unmodified _LMITVPIG_ 0 0 0 ENSG00000160131|ENST00000330374|VMA21;nc|ENSG00000160131|Q3ZAQ7-2|VMA21 ENSG00000160131|ENST00000330374|VMA21 ENSG00000160131|ENST00000330374|VMA21 MSMS UPN47_class_I_Rep_2 3 422.253662109375 2 422.254057 842.493561 NaN NaN NaN NaN NaN NaN NaN 48.432 1 51.779 51.279 52.279 3.3465 0 0 0 0.4044 1 10471 10471 4.756 0 1 24496 3856 15186 15195 28747 28747 0.06601416144826544 LMIWALPRS 9 Unmodified _LMIWALPRS_ 0 0 0 REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF MSMS UPN47_class_I_Rep_3 4 543.8106079101562 2 543.810062 1085.60557 NaN NaN NaN NaN NaN NaN NaN 43.327 1 46.569 46.069 47.069 3.2419 0 0 0 0.39326 1 8980 8980 2.3027 0.82083 1 + 24497 22995 15187 15196 28748 28748 0.06619270221813167 LMKKQPLL 8 Unmodified _LMKKQPLL_ 0 0 0 REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|47|1|sense REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|47|1|sense MSMS UPN48_class_I_Rep_3 7 485.8118591308594 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 66.999 1 70.507 70.007 71.007 3.5077 0 0 0 0.40581 1 15262 15262 2.8892 0 1 + 24498 24828 15188 15197 28749 28749 0.11849055852906076 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS UPN47_class_I_Rep_2 3 511.32769775390625 2 511.327556 1020.64056 0.26244 0.00013419 -0.46825 -0.00023943 -0.2058 -0.00010523 511.3273004979329 88.384 0.65339 91.832 91.495 92.148 3.4471 130 85 2 0 0 0 0.48643 1 21917 21917 2.0598 0 1 243240 24499 4751 15189 15198 28750 28750 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS UPN47_class_I_Rep_3 4 511.3273620605469 2 511.327556 1020.64056 0.3146 0.00016086 -0.53269 -0.00027238 -0.21809 -0.00011151 511.32723151084934 88.511 0.70003 91.904 91.451 92.151 3.3931 166 82 3 0 0 0 0.48643 1 22145 22145 2.0598 2.0598 1 450410 24500 4751 15189 15198 28751 28751 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 511.327556 1020.64056 0.31983 0.00016354 -0.51145 -0.00026152 -0.19162 -9.7982E-05 511.3271822033249 91.852 0.52251 91.852 91.611 92.133 0 0.030011 -6.4825E-05 NaN 2.0598 84 50 4 NaN NaN NaN NaN 0 NaN NaN 0 1505600 24501 4751 15189 15198 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 511.327556 1020.64056 0.32542 0.0001664 -0.5517 -0.0002821 -0.22629 -0.00011571 511.3272338837949 88.302 0.74728 91.958 91.592 92.339 3.6563 0.13599 -0.00010599 NaN 2.0598 159 89 2 NaN NaN NaN NaN 0 NaN NaN 0 525760 24502 4751 15189 15198 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 511.327556 1020.64056 0.3146 0.00016086 -0.53269 -0.00027238 -0.21809 -0.00011151 511.32723151084934 88.511 0.70003 91.904 91.451 92.151 3.3931 0.081696 -8.6537E-05 NaN 2.0598 166 82 3 NaN NaN NaN NaN 0 NaN NaN 0 450410 24503 4751 15189 15198 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 511.327556 1020.64056 0.24017 0.0001228 -0.36557 -0.00018692 -0.1254 -6.4121E-05 511.3272951567428 87.988 0.80739 91.606 91.319 92.126 3.6187 -0.216 8.4368E-05 NaN 2.0598 192 88 3 NaN NaN NaN NaN 0 NaN NaN 0 2122500 24504 4751 15189 15198 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 511.327556 1020.64056 0.32129 0.00016429 -0.41807 -0.00021377 -0.096778 -4.9486E-05 511.327236479133 88.059 0.77 91.787 91.438 92.208 3.7279 -0.035282 3.0672E-05 NaN 2.0598 230 96 3 NaN NaN NaN NaN 0 NaN NaN 0 2137600 24505 4751 15189 15198 0.13106513029754296 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 511.327556 1020.64056 0.31379 0.00016045 -0.39931 -0.00020418 -0.085519 -4.3728E-05 511.32724776416256 88.006 0.65468 91.817 91.444 92.099 3.8104 -0.0055847 4.9861E-05 NaN 2.0598 154 80 4 NaN NaN NaN NaN 0 NaN NaN 0 1845800 24506 4751 15189 15198 0.13106513029754296 LMKLVRIPLRN 11 Unmodified _LMKLVRIPLRN_ 0 0 0 REV__ENSG00000183779|ENST00000331569|ZNF703 REV__ENSG00000183779|ENST00000331569|ZNF703 MULTI-MSMS UPN48_class_I_Rep_3 7 451.6245422363281 3 451.623475 1351.8486 0.088241 3.9852E-05 1.6369 0.00073927 1.7252 0.00077912 451.6244679278924 45.176 0.52225 48.813 48.469 48.991 3.6372 68 33 4 0 0 0 0.68081 1 8625 8625 0.45452 0.087843 1 265540 + 24507 20800 15190 15199 28752 28752 0.18674514946837917 LMKVFKLV 8 Unmodified _LMKVFKLV_ 0 0 0 REV__L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|23|2|sense REV__L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.31427001953125 2 489.314449 976.614345 0.25787 0.00012618 -0.48821 -0.00023889 -0.23034 -0.00011271 489.3142140009659 87.442 0.031822 91.232 91.214 91.246 3.7905 4 2 2 0 0 0 0.82752 1 20751 20751 0.69038 0 1 533110 + 24508 27917 15191 15200 28753 28753 0.1251024385828714 LMLIFLPP 8 Unmodified _LMLIFLPP_ 0 0 0 Tigger1_dup9187|chr12:69486143-69488611:+|1.4308092726742696|0.0824514982682195|4.12|151.0|88|1|anti-sense Tigger1_dup9187|chr12:69486143-69488611:+|1.4308092726742696|0.0824514982682195|4.12|151.0|88|1|anti-sense Tigger1_dup9187|chr12:69486143-69488611:+|1.4308092726742696|0.0824514982682195|4.12|151.0|88|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.2879333496094 2 472.2879 942.561247 0.21053 9.9433E-05 -0.37723 -0.00017816 -0.1667 -7.8728E-05 472.28766192810406 87.014 0.32738 90.455 90.389 90.717 3.4407 77 42 2 0 0 0 0.82752 1 21644 21644 0.79363 0 1 214690 24509 33208 15192 15201 28754 28754 0.08766866075620783 LMLIKNRA 8 Unmodified _LMLIKNRA_ 0 0 0 REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF MSMS UPN47_class_I_Rep_1 2 479.809326171875 2 479.796955 957.579357 NaN NaN NaN NaN NaN NaN NaN 113.1 1 116.67 116.17 117.17 3.572 0 0 0 0.40738 1 27897 27897 0.79363 0 1 + 24510 22680 15193 15202 28755 28755 0.0988700105033331 LMLLRTVP 8 Unmodified _LMLLRTVP_ 0 0 0 REV__ENSG00000174327|ENST00000308027|SLC16A13 REV__ENSG00000174327|ENST00000308027|SLC16A13 MSMS UPN47_class_I_Rep_2 3 471.7952575683594 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 73.134 1 76.431 75.931 76.931 3.2971 0 0 0 0.40581 1 17965 17965 2.8892 0 1 + 24511 20517 15194 15203 28756 28756 0.1000848281881872 LMLMWLFFL 9 Unmodified _LMLMWLFFL_ 0 0 0 REV__L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|219|1|anti-sense REV__L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|219|1|anti-sense MSMS UPN47_class_I_Rep_3 4 607.3296508789062 2 607.329242 1212.64393 NaN NaN NaN NaN NaN NaN NaN 47.638 1 50.879 50.379 51.379 3.2405 0 0 0 0.3979 1 10296 10296 0.6015 0 1 + 24512 30160 15195 15204 28757 28757 0.04611439812128992 LMLNQRKW 8 Unmodified _LMLNQRKW_ 0 0 0 ENST00000424556.2_1_11:1856509-1858658:+|nuORF;ENSG00000149043|ENST00000341958|SYT8 ENST00000424556.2_1_11:1856509-1858658:+|nuORF ENST00000424556.2_1_11:1856509-1858658:+|nuORF MSMS UPN48_class_I_Rep_2 6 544.8074340820312 2 544.805311 1087.59607 NaN NaN NaN NaN NaN NaN NaN 39.73 1 43.471 42.971 43.971 3.7413 0 0 0 0.4044 1 7080 7080 4.756 0 1 24513 3525 15196 15205 28758 28758 0.05577501936295448 LMLYIEWH 8 Unmodified _LMLYIEWH_ 0 0 0 REV__L1PA3_dup686|chr1:223767173-223768920:-|1.2605312495911425|0.4740109258181723|1.41|151.0|50|3|sense REV__L1PA3_dup686|chr1:223767173-223768920:-|1.2605312495911425|0.4740109258181723|1.41|151.0|50|3|sense MSMS UPN48_class_I_Rep_1 5 552.8115844726562 2 552.78097 1103.54739 NaN NaN NaN NaN NaN NaN NaN 33.935 1 37.456 36.956 37.956 3.5201 0 0 0 0.40738 1 5361 5361 0.79363 0 1 + 24514 29509 15197 15206 28759 28759 -0.00024411423441961233 LMLYKGPK 8 Unmodified _LMLYKGPK_ 0 0 0 REV__L1MEg2_dup616|chr15:90898082-90898891:+|2.693115729038363|0.1177863345616934|4.52|151.0|65|3|anti-sense REV__L1MEg2_dup616|chr15:90898082-90898891:+|2.693115729038363|0.1177863345616934|4.52|151.0|65|3|anti-sense MSMS UPN46_class_I_Rep_3 1 475.2804870605469 2 475.280606 948.546659 NaN NaN NaN NaN NaN NaN NaN 82.882 1 82.882 82.382 83.382 0 0 0 0 0.40746 1 19657 19657 0.69038 0 1 + 24515 28795 15198 15207 28760 28760 0.07032793927487546 LMMCKKMMVV 10 Unmodified _LMMCKKMMVV_ 0 0 0 REV__ENST00000579456.5_1_17:57759990-57760286:+|nuORF REV__ENST00000579456.5_1_17:57759990-57760286:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 607.3034057617188 2 607.303529 1212.59251 0.59346 0.00036041 0.013365 8.1169E-06 0.60682 0.00036852 607.3033421142381 57.126 0.69511 60.64 60.44 61.135 3.5142 107 59 2 0 0 0 0.56033 1 12289 12289 3.5965 0 1 259610 + 24516 23119 15199 15208 28761 28761 -0.005287115400960829 LMNRNKKKF 9 Unmodified _LMNRNKKKF_ 0 0 0 L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|69|3|sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|69|3|sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|69|3|sense MSMS UPN47_class_I_Rep_3 4 589.845703125 2 589.844968 1177.67538 NaN NaN NaN NaN NaN NaN NaN 84.601 1 87.962 87.462 88.462 3.3615 0 0 0 0.39518 1 21237 21237 1.8442 0 1 24517 8915 15200 15209 28762 28762 0.09365148890401542 LMPVCAIHF 9 Unmodified _LMPVCAIHF_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|218|3|anti-sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|218|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.2991333007812 2 515.764266 1029.51398 0.2576 0.00013286 -1.186 -0.00061168 -0.92837 -0.00047882 515.763738551828 42.869 0.52862 46.51 46.234 46.762 3.6415 56 41 2 0 0 0 0.48414 1 7829 7829 2.3027 0.24298 1 162690 + 24518 25456 15201 15210 28763 28763 0.0004026353296922025 LMQMKWLY 8 Unmodified _LMQMKWLY_ 0 0 0 REV__MER21-int_dup436|chr8:65757917-65759109:-|1.980593879580004|0.1186108514931494|4.06|151.0|3|1|sense REV__MER21-int_dup436|chr8:65757917-65759109:-|1.980593879580004|0.1186108514931494|4.06|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.784912109375 2 556.785198 1111.55584 0.37178 0.000207 -1.1926 -0.00066405 -0.82087 -0.00045705 556.7843715217889 68.337 0.14857 68.337 68.203 68.352 0 22 15 2 0 0 0 0.82752 1 15603 15603 14.582 0 1 119530 + 24519 31174 15202 15211 28764 28764 0.004528192215047966 LMQRDLIPGRR 11 Unmodified _LMQRDLIPGRR_ 0 0 0 REV__ENST00000505306.5_1_17:48167246-48167522:+|nuORF REV__ENST00000505306.5_1_17:48167246-48167522:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 452.26220703125 3 452.262717 1353.76632 0.11362 5.1385E-05 0.24996 0.00011305 0.36358 0.00016443 452.26281114719467 58.176 1.2025 61.708 61.315 62.517 3.5317 128 79 2 0 0 0 0.68219 1 12729 12729 0.32927 0 1 244020 + 24520 22711 15203 15212 28765 28765 0.10358992867895722 LMRAAIKTHIR 11 Unmodified _LMRAAIKTHIR_ 0 0 0 REV__ENST00000597330.1_1_19:58556424-58557021:+|nuORF REV__ENST00000597330.1_1_19:58556424-58557021:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 437.2679138183594 3 437.267691 1308.78124 -0.31622 -0.00013827 0.6395 0.00027963 0.32328 0.00014136 437.60234426811513 50.497 0.49604 53.723 53.445 53.941 3.2262 44 27 2 0 0 0 0.68178 1 11179 11179 0.36667 0 1 68977 + 24521 23196 15204 15213 28766 28766 0.13920484735899663 LMRAIRQE 8 Unmodified _LMRAIRQE_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|95|2|sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|95|2|sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|95|2|sense MSMS UPN46_class_I_Rep_3 1 508.7864990234375 2 508.787118 1015.55968 NaN NaN NaN NaN NaN NaN NaN 23.869 1 23.869 23.369 24.369 0 0 0 0 0.40625 1 3059 3059 2.3027 0 1 24522 15357 15205 15214 28767 28767 0.05252625039577197 LMRLLTLHYRV 11 Unmodified _LMRLLTLHYRV_ 0 0 0 REV__L1MA6_dup2864|chr9:40981492-40983651:+|1.287728345406843|0.4884071949421211|1.4|149.0|21|1|sense REV__L1MA6_dup2864|chr9:40981492-40983651:+|1.287728345406843|0.4884071949421211|1.4|149.0|21|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 471.79571533203125 3 472.28323 1413.82786 0.2253 0.00010641 0.53329 0.00025186 0.75859 0.00035827 472.2833844982496 93.672 0.089516 97.408 97.354 97.444 3.736 20 12 2 0 0 0 22.551 1 23292 23292 1.3296 0.55311 1 60481 + 24523 25452 15206 15215 28768 28768 0.13749924567196103 LMRLLTLHYRV 11 Unmodified _LMRLLTLHYRV_ 0 0 0 REV__L1MA6_dup2864|chr9:40981492-40983651:+|1.287728345406843|0.4884071949421211|1.4|149.0|21|1|sense REV__L1MA6_dup2864|chr9:40981492-40983651:+|1.287728345406843|0.4884071949421211|1.4|149.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.28302001953125 3 472.28323 1413.82786 0.21257 0.00010039 0.27507 0.00012991 0.48765 0.00023031 472.2831345229501 92.856 0.47662 96.626 96.333 96.81 3.77 113 67 3 0 0 0 0.68081 1 22053 22053 0.45452 0.29519 1 273650 + 24524 25452 15206 15215 28769 28769 0.13749924567196103 LMRLVQAPV 9 Unmodified _LMRLVQAPV_ 0 0 0 REV__LTR5B_dup305|chr16:29740241-29741225:+|1.6235151210654082|0.0292816495605788|5.79|151.0|32|3|sense REV__LTR5B_dup305|chr16:29740241-29741225:+|1.6235151210654082|0.0292816495605788|5.79|151.0|32|3|sense MSMS UPN48_class_I_Rep_3 7 513.8101806640625 2 513.810062 1025.60557 NaN NaN NaN NaN NaN NaN NaN 44.859 1 48.496 47.996 48.996 3.6372 0 0 0 0.38639 1 8523 8523 3.9444 1.6417 1 + 24525 30981 15207 15216 28770 28770 0.09379270221802471 LMRRLRKVLTF 11 Unmodified _LMRRLRKVLTF_ 0 0 0 LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|31|2|anti-sense LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|31|2|anti-sense LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.30255126953125 3 478.302624 1431.88604 0.25063 0.00011988 0.37079 0.00017735 0.62142 0.00029723 478.3026169470558 65.013 1.1048 68.521 67.929 69.034 3.5077 208 85 4 0 0 0 0.68024 1 14726 14726 0.50596 0.09769 1 828450 24526 15520 15208 15217 28771 28771 0.18737606212448554 LMRRLRKVLTF 11 Unmodified _LMRRLRKVLTF_ 0 0 0 LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|31|2|anti-sense LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|31|2|anti-sense LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.30120849609375 3 478.302624 1431.88604 0.26211 0.00012537 0.24481 0.0001171 0.50692 0.00024246 478.6371444094434 66.401 0.34868 69.908 69.741 70.089 3.5077 57 28 3 0 0 0 0.68024 1 15050 15050 0.50596 0 1 142340 24527 15520 15208 15217 28772 28772 0.18737606212448554 LMRRMTCSIW 10 Unmodified _LMRRMTCSIW_ 0 0 0 ENST00000260270.2_1_11:110327713-110327764:+|nuORF ENST00000260270.2_1_11:110327713-110327764:+|nuORF ENST00000260270.2_1_11:110327713-110327764:+|nuORF MSMS UPN47_class_I_Rep_2 3 432.88525390625 3 432.883973 1295.63009 NaN NaN NaN NaN NaN NaN NaN 102.03 1 105.54 105.04 106.04 3.5151 0 0 0 0.53105 1 24860 24860 0.69767 0 1 24528 5948 15209 15218 28773 28773 -0.005901609586317136 LMRRMTCSIW 10 Unmodified _LMRRMTCSIW_ 0 0 0 ENST00000260270.2_1_11:110327713-110327764:+|nuORF ENST00000260270.2_1_11:110327713-110327764:+|nuORF ENST00000260270.2_1_11:110327713-110327764:+|nuORF MSMS UPN47_class_I_Rep_3 4 432.8851318359375 3 432.883973 1295.63009 NaN NaN NaN NaN NaN NaN NaN 98.05 1 101.47 100.97 101.97 3.4216 0 0 0 0.53105 1 24286 24286 0.69767 0 1 24529 5948 15209 15218 28774 28774 -0.005901609586317136 LMRRMTCSIW 10 Unmodified _LMRRMTCSIW_ 0 0 0 ENST00000260270.2_1_11:110327713-110327764:+|nuORF ENST00000260270.2_1_11:110327713-110327764:+|nuORF ENST00000260270.2_1_11:110327713-110327764:+|nuORF MSMS UPN48_class_I_Rep_3 7 432.8851013183594 3 432.883973 1295.63009 NaN NaN NaN NaN NaN NaN NaN 100.95 1 104.76 104.26 105.26 3.8153 0 0 0 0.53105 1 23885 23885 0.69767 0 1 24530 5948 15209 15218 28775 28775 -0.005901609586317136 LMTEFCCA 8 Unmodified _LMTEFCCA_ 0 0 0 ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|102|2|anti-sense ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|102|2|anti-sense ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|102|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 459.1826477050781 2 459.181917 916.349282 0.20975 9.6313E-05 1.4629 0.00067176 1.6727 0.00076807 459.18243377389814 98.106 0.026871 98.106 98.093 98.12 0 4 2 2 0 0 0 0.82752 1 23888 23888 0.79363 0 1 29933 24531 7735 15210 15219 28776 28776 -0.1122391666913245 LMTSTLEPTEL 11 Unmodified _LMTSTLEPTEL_ 0 0 0 REV__nc|ENSG00000123119|Q8N987-2|NECAB1 REV__nc|ENSG00000123119|Q8N987-2|NECAB1 MSMS UPN48_class_I_Rep_2 6 617.8182373046875 2 617.815404 1233.61626 NaN NaN NaN NaN NaN NaN NaN 56.446 1 59.979 59.479 60.479 3.5333 0 0 0 0.38417 1 12122 12122 2.7352 0.67545 1 + 24532 18773 15211 15220 28777 28777 0.008791632949623818 LMVKLGLCVCR 11 Unmodified _LMVKLGLCVCR_ 0 0 0 L1MC3_dup3462|chr4:173404868-173406926:-|1.884988129433001|0.0593003682928886|4.99|150.0|77|1|anti-sense L1MC3_dup3462|chr4:173404868-173406926:-|1.884988129433001|0.0593003682928886|4.99|150.0|77|1|anti-sense L1MC3_dup3462|chr4:173404868-173406926:-|1.884988129433001|0.0593003682928886|4.99|150.0|77|1|anti-sense MSMS UPN46_class_I_Rep_3 1 617.8472290039062 2 617.845264 1233.67598 NaN NaN NaN NaN NaN NaN NaN 67.567 1 67.567 67.067 68.067 0 0 0 0 0.38417 1 15386 15386 1.1933 0.59184 1 24533 11333 15212 15221 28778 28778 0.06848484223610285 LMVLVHHC 8 Unmodified _LMVLVHHC_ 0 0 0 BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|73|2|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|73|2|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|73|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 475.74700927734375 2 476.248783 950.483013 -0.27282 -0.00012993 -0.50623 -0.00024109 -0.77905 -0.00037102 476.24814953190315 17.879 0.03751 17.879 17.856 17.893 0 6 4 2 0 0 0 0.72333 1 1478 1478 0.79363 0 1 12499 24534 420 15213 15222 28779 28779 0.005791102187345132 LMVMGLPII 9 Unmodified _LMVMGLPII_ 0 0 0 REV__L1MC5_dup10035|chr11:43473912-43474639:+|3.085464747580536|0.0926806350183242|5.06|151.0|27|1|anti-sense REV__L1MC5_dup10035|chr11:43473912-43474639:+|3.085464747580536|0.0926806350183242|5.06|151.0|27|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 493.7901916503906 2 493.792492 985.570431 0.29743 0.00014687 1.0742 0.00053045 1.3717 0.00067732 493.790445336125 83.306 0.061707 83.306 83.271 83.333 0 7 5 2 0 0 0 0.12422 1 19773 19773 2.3027 0.24298 1 17399 + 24535 27044 15214 15223 28780 28780 0.07706891369673485 LMVRGLLY 8 Unmodified _LMVRGLLY_ 0 0 0 REV__ENSG00000105642|ENST00000684775|KCNN1 REV__ENSG00000105642|ENST00000684775|KCNN1 MSMS UPN46_class_I_Rep_3 1 482.7959899902344 2 482.786056 963.557558 NaN NaN NaN NaN NaN NaN NaN 38.029 1 38.029 37.529 38.529 0 0 0 0 0.4032 1 7206 7206 6.3541 1.1234 1 + 24536 18299 15215 15224 28781 28781 0.07432196301783733 LMWWYIPP 8 Unmodified _LMWWYIPP_ 0 0 0 REV__ENST00000474359.6_1_12:58016417-58018310:+|nuORF REV__ENST00000474359.6_1_12:58016417-58018310:+|nuORF MSMS UPN48_class_I_Rep_3 7 553.2788696289062 2 553.280606 1104.54666 NaN NaN NaN NaN NaN NaN NaN 30.344 1 34.059 33.559 34.559 3.7146 0 0 0 0.40738 1 4364 4364 0.79363 0.10326 1 + 24537 22522 15216 15225 28782 28782 -0.0014320607251647743 LMYTITNVV 9 Unmodified _LMYTITNVV_ 0 0 0 REV__L1M4a2_dup123|chr1:192173287-192175009:-|1.5756694827996938|0.0136886083356889|6.85|149.0|60|3|sense REV__L1M4a2_dup123|chr1:192173287-192175009:-|1.5756694827996938|0.0136886083356889|6.85|149.0|60|3|sense MSMS UPN46_class_I_Rep_3 1 527.283935546875 2 527.286085 1052.55762 NaN NaN NaN NaN NaN NaN NaN 92.009 1 92.009 91.509 92.509 0 0 0 0 0.38639 1 22250 22250 3.9444 0.94915 1 + 24538 24502 15217 15226 28783 28783 0.0334415151110079 LNAEDRPYL 9 Unmodified _LNAEDRPYL_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 545.254150390625 2 545.780013 1089.54547 0.43012 0.00023475 1.9822 0.0010818 2.4123 0.0013166 545.7811545385949 57.982 0.37757 61.419 61.078 61.455 3.437 37 22 2 0 0 0 0.10629 1 13353 13353 12.241 4.0851 1 203970 + 24539 29041 15218 15227 28784 28784 0.0042825109228488145 LNAEDRPYL 9 Unmodified _LNAEDRPYL_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 545.2538452148438 2 545.780013 1089.54547 0.49239 0.00026874 -1.014 -0.00055343 -0.52162 -0.00028469 546.2803332623303 58.77 0.61878 62.051 61.745 62.364 3.2818 53 36 3 0 0 0 0.11705 1 13658 13658 10.824 2.9138 1 143700 + 24540 29041 15218 15227 28785 28785 0.0042825109228488145 LNAEDRPYL 9 Unmodified _LNAEDRPYL_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 545.780013 1089.54547 0.49087 0.0002679 2.3386 0.0012764 2.8295 0.0015443 545.7814094404162 58.128 0.17391 61.419 61.271 61.445 3.2912 0.046265 9.1403E-05 NaN 8.1555 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 212160 + 24541 29041 15218 15227 0.0042825109228488145 LNAEDRPYL 9 Unmodified _LNAEDRPYL_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|201|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 545.780013 1089.54547 0.5847 0.00031912 3.3931 0.0018519 3.9778 0.002171 546.2830085450648 57.767 0.079208 61.281 61.254 61.334 3.5142 -0.092233 0.0012424 NaN 8.1555 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 31034 + 24542 29041 15218 15227 0.0042825109228488145 LNAEHDGAFY 10 Unmodified _LNAEHDGAFY_ 0 0 0 CON__P01044-1;CON__Q2KJ62 CON__P01044-1 CON__P01044-1 MULTI-MSMS UPN47_class_I_Rep_1 2 568.7540283203125 2 568.753995 1135.49344 -0.047015 -2.674E-05 0.12428 7.0686E-05 0.077268 4.3946E-05 568.7538688741405 37.708 0.61838 41.373 41.065 41.683 3.6652 60 45 2 0 0 0 0.56033 1 7224 7224 3.5965 0.31518 1 86101 + 24543 632 15219 15228 28786 28786 -0.06888912321483076 LNAFIGEELT 10 Unmodified _LNAFIGEELT_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS UPN47_class_I_Rep_1 2 553.790283203125 2 553.790047 1105.56554 0.39247 0.00021734 0.038817 2.1496E-05 0.43128 0.00023884 553.7899273897068 64.437 0.90509 67.793 67.421 68.326 3.3557 165 85 2 0 0 0 0.3776 1 15257 15257 21.537 0 1 404980 + 24544 17556 15220 15229 28787 28787 0.01698002032230761 LNAISTKIP 9 Unmodified _LNAISTKIP_ 0 0 0 L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|53|3|sense L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|53|3|sense L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.79248046875 2 478.792392 955.570232 0.13846 6.6295E-05 -0.077241 -3.6983E-05 0.061222 2.9313E-05 478.79218598845404 58.746 0.97365 62.163 61.594 62.567 3.4171 113 65 3 0 0 0 0.32682 1 13434 13434 12.241 0 1 163810 24545 10614 15221 15230 28788 28788 0.0906693096563913 LNAKEARLT 9 Unmodified _LNAKEARLT_ 0 0 0 REV__ENSG00000188636|ENST00000341255|RTL6 REV__ENSG00000188636|ENST00000341255|RTL6 MULTI-MSMS UPN46_class_I_Rep_3 1 508.28057861328125 2 508.298373 1014.58219 0.28089 0.00014278 -1.67 -0.00084886 -1.3891 -0.00070608 508.2973191784827 46.393 0.40888 46.393 46.239 46.648 0 73 44 2 0 0 0 0.21527 2 9502 9502;9535 19.257 0 1 197970 + 24546 20977 15222 15231 28789;28790 28789 0.07548547708836395 LNAQIITAL 9 Unmodified _LNAQIITAL_ 0 0 0 ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.T586Hfs*9|1|0.12|ENSG00000052749|chr10:97379336-97379337|-/A|frameshift_variant;ENSG00000052749.14,RRP12,chr10,-,I22.1,97373895,97379292|24|34.79|1|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 478.7917785644531 2 478.792392 955.570232 0.13846 6.6295E-05 -0.077241 -3.6983E-05 0.061222 2.9313E-05 478.79218598845404 58.746 0.97365 62.163 61.594 62.567 3.4171 113 65 3 0 0 0 0.20317 2 13556 13517;13556 20.415 0 1 163810 24547 923 15223 15232 28791;28792 28792 0.0906693096563913 LNAQIITAL 9 Unmodified _LNAQIITAL_ 0 0 0 ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.T586Hfs*9|1|0.12|ENSG00000052749|chr10:97379336-97379337|-/A|frameshift_variant;ENSG00000052749.14,RRP12,chr10,-,I22.1,97373895,97379292|24|34.79|1|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 478.7923889160156 2 478.792392 955.570232 0.23464 0.00011234 -0.35072 -0.00016792 -0.11608 -5.5577E-05 478.792161509208 58.927 0.56161 62.209 61.815 62.377 3.2818 58 33 2 0 0 0 0.20317 1 13665 13665 20.415 0 1 119630 24548 923 15223 15232 28793 28793 0.0906693096563913 LNATLERIR 9 Unmodified _LNATLERIR_ 0 0 0 REV__ENSG00000128710|ENST00000249501|HOXD10 REV__ENSG00000128710|ENST00000249501|HOXD10 MULTI-MSMS UPN47_class_I_Rep_2 3 543.3242797851562 2 543.324922 1084.63529 0.0099505 5.4064E-06 -1.1235 -0.00061043 -1.1136 -0.00060502 543.3243972306914 34.687 0.24671 38.112 37.98 38.227 3.4253 25 16 2 0 0 0 0.47763 1 6301 6301 2.9952 0 1 55524 + 24549 18905 15224 15233 28794 28794 0.09635925491488706 LNATLERIR 9 Unmodified _LNATLERIR_ 0 0 0 REV__ENSG00000128710|ENST00000249501|HOXD10 REV__ENSG00000128710|ENST00000249501|HOXD10 MSMS UPN47_class_I_Rep_3 4 543.3247680664062 2 543.324922 1084.63529 NaN NaN NaN NaN NaN NaN NaN 34.957 1 38.221 37.721 38.721 3.2639 0 0 0 0.37891 1 6416 6416 5.7319 0 1 + 24550 18905 15224 15233 28795 28795 0.09635925491488706 LNDHRRKW 8 Unmodified _LNDHRRKW_ 0 0 0 L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|20|1|sense L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|20|1|sense L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|20|1|sense MSMS UPN47_class_I_Rep_2 3 562.8065795898438 2 562.807231 1123.59991 NaN NaN NaN NaN NaN NaN NaN 16.397 1 19.784 19.284 20.284 3.3864 0 0 0 0.40746 1 1039 1039 0.69038 0 1 24551 14899 15225 15234 28796 28796 0.0430530775436182 LNDQDNEDC 9 Unmodified _LNDQDNEDC_ 0 0 0 ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M MSMS UPN47_class_I_Rep_2 3 533.1912231445312 2 533.19311 1064.37167 NaN NaN NaN NaN NaN NaN NaN 62.508 1 65.763 65.263 66.263 3.2558 0 0 0 0.38639 1 14766 14766 3.9444 1.2092 1 24552 4741 15226 15235 28797 28797 -0.15794322466149424 LNEEWLTGM 9 Unmodified _LNEEWLTGM_ 0 0 0 ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3 ENST00000412626.2_1_9:67272267-67281749:-|nuORF ENST00000412626.2_1_9:67272267-67281749:-|nuORF MSMS UPN47_class_I_Rep_2 3 546.7530517578125 2 546.755149 1091.49575 NaN NaN NaN NaN NaN NaN NaN 40.459 1 43.83 43.33 44.33 3.3712 0 0 0 0.37476 1 8058 8058 6.7232 2.3939 1 24553 6636 15227 15236 28798 28798 -0.04634199908014125 LNFEKGTKI 9 Unmodified _LNFEKGTKI_ 0 0 0 L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|44|3|sense L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|44|3|sense L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.30322265625 2 525.303124 1048.5917 0.35293 0.0001854 -0.41427 -0.00021762 -0.061336 -3.222E-05 525.3027221101337 39.929 0.55252 43.579 43.258 43.81 3.6509 87 52 2 0 0 0 0.49187 1 6967 6967 1.4819 0 1 85092 24554 9837 15228 15237 28799 28799 0.06934315994362805 LNFKKSLKSAN 11 Unmodified _LNFKKSLKSAN_ 0 0 0 HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|9|1|sense HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|9|1|sense HSMAR2_dup398|chr4:37905196-37906163:-|1.0009912987732703|0.2263757678808688|2.14|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 625.3659057617188 2 625.366787 1248.71902 0.61005 0.0003815 0.018371 1.1489E-05 0.62842 0.00039299 625.868328007514 91.655 0.46358 95.116 94.844 95.308 3.4613 137 70 3 0 0 0 0.61292 1 22674 22674 4.897 0 1 3083800 24555 8435 15229 15238 28800 28800 0.10461036868582596 LNFLFRLYI 9 Unmodified _LNFLFRLYI_ 0 0 0 L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|70|3|anti-sense L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|70|3|anti-sense L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|70|3|anti-sense MSMS UPN46_class_I_Rep_3 1 400.23797607421875 3 400.237615 1197.69102 NaN NaN NaN NaN NaN NaN NaN 108.52 1 108.52 108.02 109.02 0 0 0 0 0.3824 1 26545 26545 4.897 0 1 24556 10424 15230 15239 28801 28801 0.10007758679148537 LNFNGLKSLS 10 Unmodified _LNFNGLKSLS_ 0 0 0 REV__nc|ENSG00000083223|Q5VYS8-3|TUT7 REV__nc|ENSG00000083223|Q5VYS8-3|TUT7 MSMS UPN47_class_I_Rep_3 4 546.8062744140625 2 546.806031 1091.59751 NaN NaN NaN NaN NaN NaN NaN 110.91 1 114.44 113.94 114.94 3.529 0 0 0 0.53105 1 27211 27211 1.3295 0.5359 1 + 24557 17929 15231 15240 28802 28802 0.05537414506034111 LNFQFWNI 8 Unmodified _LNFQFWNI_ 0 0 0 HAL1_dup18841|chr15:30547025-30547502:-|1.3806695706497791|0.3134710470430546|2.14|146.0|38|2|anti-sense;HAL1_dup18840|chr15:30418735-30419212:+|1.9873047912542687|0.1663226893684593|3.58|150.0|38|2|anti-sense HAL1_dup18841|chr15:30547025-30547502:-|1.3806695706497791|0.3134710470430546|2.14|146.0|38|2|anti-sense HAL1_dup18841|chr15:30547025-30547502:-|1.3806695706497791|0.3134710470430546|2.14|146.0|38|2|anti-sense MSMS UPN47_class_I_Rep_1 2 541.274658203125 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 81.524 1 85.036 84.536 85.536 3.5122 0 0 0 0.40404 1 20344 20344 5.2307 0 1 24558 7845 15232 15241 28803 28803 0.0022177765142714634 LNFQMVPAPV 10 Unmodified _LNFQMVPAPV_ 0 0 0 MLT1H1_dup2986|chr15:43675019-43675484:+|1.029119327177617|0.3438955515424628|1.58|151.0|16|3|sense MLT1H1_dup2986|chr15:43675019-43675484:+|1.029119327177617|0.3438955515424628|1.58|151.0|16|3|sense MLT1H1_dup2986|chr15:43675019-43675484:+|1.029119327177617|0.3438955515424628|1.58|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.3008422851562 2 558.299527 1114.5845 -0.029374 -1.6399E-05 1.9071 0.0010647 1.8777 0.0010483 558.3004730192202 35.602 0.18193 39.278 39.141 39.323 3.6762 16 12 2 0 0 0 0.56033 1 6554 6554 3.5965 0.8613 1 38023 24559 16438 15233 15242 28804 28804 0.031792601223060046 LNFTRFTK 8 Unmodified _LNFTRFTK_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|82|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|82|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|82|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.7893676757812 2 513.790184 1025.56581 -0.29262 -0.00015034 -0.6067 -0.00031171 -0.89932 -0.00046206 513.7896727064946 34.826 1.0666 38.251 37.832 38.898 3.4253 132 74 2 0 0 0 0.82752 1 6336 6336 7.2892 0 1 181630 24560 13589 15234 15243 28805 28805 0.05405466542742943 LNGELAPRQ 9 Unmodified _LNGELAPRQ_ 0 0 0 REV__HERVIP10FH-int_dup241|chr10:29436720-29438848:-|1.871164615685307|0.3687814641937663|2.34|151.0|136|3|anti-sense REV__HERVIP10FH-int_dup241|chr10:29436720-29438848:-|1.871164615685307|0.3687814641937663|2.34|151.0|136|3|anti-sense MSMS UPN47_class_I_Rep_1 2 499.2341613769531 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 68.727 1 72.091 71.591 72.591 3.3646 0 0 0 0.38784 1 16610 16610 3.5965 0.8613 1 + 24561 23767 15235 15244 28806 28806 0.036836881577073655 LNGQLPLFV 9 Unmodified _LNGQLPLFV_ 0 0 0 REV__ENST00000415026.1_1_21:47605013-47608646:+|nuORF REV__ENST00000415026.1_1_21:47605013-47608646:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.79730224609375 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 85.118 1 88.724 88.224 89.224 3.6059 0 0 0 0.38478 1 20360 20360 4.3292 0.73274 1 + 24562 22212 15236 15245 28807 28807 0.07551234828292763 LNHRLIPQE 9 Unmodified _LNHRLIPQE_ 0 0 0 REV__HAL1M8_dup925|chr7:129022482-129023828:+|1.3249607940145944|0.0081792778070427|7.34|151.0|34|3|sense REV__HAL1M8_dup925|chr7:129022482-129023828:+|1.3249607940145944|0.0081792778070427|7.34|151.0|34|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.317138671875 2 560.317097 1118.61964 0.33337 0.00018679 -0.068576 -3.8424E-05 0.26479 0.00014837 560.316986760217 41.218 0.94987 44.864 44.502 45.452 3.6458 212 97 3 0 0 0 0.43153 1 7518 7518 6.2058 0 1 483150 + 24563 23483 15237 15246 28808 28808 0.06507638974471774 LNIFGFILK 9 Unmodified _LNIFGFILK_ 0 0 0 REV__L1MEh_dup409|chr2:148184313-148185387:-|1.3590548353483547|0.0280251286171436|5.6|150.0|49|2|anti-sense REV__L1MEh_dup409|chr2:148184313-148185387:-|1.3590548353483547|0.0280251286171436|5.6|150.0|49|2|anti-sense MSMS UPN46_class_I_Rep_3 1 532.8096313476562 2 532.828778 1063.643 NaN NaN NaN NaN NaN NaN NaN 68.036 1 68.036 67.536 68.536 0 0 0 0 0.36505 1 15514 15514 7.2892 1.0834 1 + 24564 28800 15238 15247 28809 28809 0.1137268475908968 LNIHHVVLVP 10 Unmodified _LNIHHVVLVP_ 0 0 0 L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|354|3|anti-sense L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|354|3|anti-sense L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|354|3|anti-sense MSMS UPN46_class_I_Rep_3 1 570.84814453125 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 26.984 1 26.984 26.484 27.484 0 0 0 0 0.53105 1 3942 3942 3.5965 0 1 24565 14349 15239 15248 28810 28810 0.11725990393620123 LNILNFGTKS 10 Unmodified _LNILNFGTKS_ 0 0 0 REV__nc|ENSG00000075651|Q13393-3|PLD1 REV__nc|ENSG00000075651|Q13393-3|PLD1 MULTI-SECPEP UPN47_class_I_Rep_2 3 554.3162231445312 2 553.813856 1105.61316 0.041451 2.2956E-05 0.13416 7.4302E-05 0.17561 9.7258E-05 553.8140974052798 41.461 0.23896 44.826 44.657 44.896 3.3655 25 19 2 0 0 0 0.84575 1 8321 8321 3.2813 0 1 56681 + 24566 31942 15240 15249 28811 28811 0.06457701023077789 LNILYNKNP 9 Unmodified _LNILYNKNP_ 0 0 0 L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|53|2|sense L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|53|2|sense L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|53|2|sense MSMS UPN48_class_I_Rep_2 6 544.80615234375 2 544.808574 1087.60259 NaN NaN NaN NaN NaN NaN NaN 39.633 1 43.362 42.862 43.862 3.7297 0 0 0 0.36505 1 7055 7055 7.2892 0 1 24567 9373 15241 15250 28812 28812 0.062297183686723656 LNIQLKWKR 9 Unmodified _LNIQLKWKR_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-6|PIGT MSMS UPN48_class_I_Rep_3 7 599.8742065429688 2 599.874582 1197.73461 NaN NaN NaN NaN NaN NaN NaN 67.842 1 71.349 70.849 71.849 3.5077 0 0 0 0.4007 1 15517 15517 0.52476 0 1 24568 2447;16677 15242 15251 28813 28813 0.14365368176254378 LNKCLFEFF 9 Unmodified _LNKCLFEFF_ 0 0 0 L1MB7_dup9774|chr8:47655904-47657171:+|1.7185036328601502|0.0615881860098536|4.8|151.0|66|2|anti-sense L1MB7_dup9774|chr8:47655904-47657171:+|1.7185036328601502|0.0615881860098536|4.8|151.0|66|2|anti-sense L1MB7_dup9774|chr8:47655904-47657171:+|1.7185036328601502|0.0615881860098536|4.8|151.0|66|2|anti-sense MSMS UPN48_class_I_Rep_3 7 580.7782592773438 2 580.794078 1159.5736 NaN NaN NaN NaN NaN NaN NaN 58.653 1 62.176 61.676 62.676 3.5231 0 0 0 0.35339 1 12730 12730 7.9102 1.7044 1 24569 10891 15243 15252 28814 28814 0.000198577480205131 LNKFVETEL 9 Unmodified _LNKFVETEL_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.801025390625 2 546.800414 1091.58628 0.41049 0.00022446 0.1375 7.5186E-05 0.548 0.00029964 546.800441335387 64.416 0.49693 67.772 67.392 67.889 3.3557 174 50 4 0 0 0 0.1249 1 15214 15214 29.082 1.4528 1 3044800 24570 11264 15244 15253 28815 28815 0.04414592411899321 LNKFVETEL 9 Unmodified _LNKFVETEL_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.7999877929688 2 546.800414 1091.58628 NaN NaN NaN NaN NaN NaN NaN 65.117 1 68.472 67.972 68.972 3.3557 0 0 0 0.085573 1 15510 15510 27.629 0 1 24571 11264 15244 15253 28816 28816 0.04414592411899321 LNKFVETEL 9 Unmodified _LNKFVETEL_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.8008422851562 2 546.800414 1091.58628 NaN NaN NaN NaN NaN NaN NaN 65.285 1 68.641 68.141 69.141 3.3557 0 0 0 0.18866 1 15562 15562 17.113 1.2657 1 24572 11264 15244 15253 28817 28817 0.04414592411899321 LNKFVETEL 9 Unmodified _LNKFVETEL_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|233|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.8006591796875 2 546.800414 1091.58628 0.42214 0.00023083 0.066606 3.642E-05 0.48875 0.00026725 546.800386293355 64.845 1.2302 68.024 67.565 68.796 3.1795 280 95 4 0 0 0 0.13244 1 15680 15680 27.629 4.8925 1 2196600 24573 11264 15244 15253 28818 28818 0.04414592411899321 LNKGGKNIYI 10 Unmodified _LNKGGKNIYI_ 0 0 0 LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|23|1|anti-sense LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|23|1|anti-sense LTR10E_dup231|chr16:71919857-71920452:-|1.937249017282005|0.4149555813595248|2.22|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.328857421875 2 560.329673 1118.64479 0.51698 0.00028968 -1.285 -0.00072002 -0.76802 -0.00043035 560.3285203832203 53.938 0.65622 57.257 56.972 57.628 3.3187 64 40 2 0 0 0 0.46161 2 12133 12133;12188 14.838 0.93222 1 97130 24574 15519 15245 15254 28819;28820 28819 0.09021693777026485 LNKHIHLF 8 Unmodified _LNKHIHLF_ 0 0 0 REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|296|3|anti-sense REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|296|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.30023193359375 2 511.300719 1020.58688 0.13471 6.888E-05 -1.5153 -0.00077477 -1.3806 -0.00070589 511.2998671830187 51.429 0.55198 55.022 54.658 55.21 3.5932 46 27 2 0 0 0 0.82752 1 11338 11338 5.7604 0 1 72551 + 24575 27820 15246 15255 28821 28821 0.07741476642274847 LNKHIKMC 8 Unmodified _LNKHIKMC_ 0 0 0 REV__ENST00000469673.1_1_22:31822577-31829954:+|nuORF REV__ENST00000469673.1_1_22:31822577-31829954:+|nuORF MSMS UPN47_class_I_Rep_1 2 493.7670593261719 2 493.76734 985.520127 NaN NaN NaN NaN NaN NaN NaN 37.681 1 41.347 40.847 41.847 3.6652 0 0 0 0.4044 1 7178 7178 4.756 1.1595 1 + 24576 20860 15247 15256 28822 28822 0.02678781764507221 LNKIKNVSA 9 Unmodified _LNKIKNVSA_ 0 0 0 REV__nc|ENSG00000049246|P56645|PER3 REV__nc|ENSG00000049246|P56645|PER3 MULTI-MSMS UPN47_class_I_Rep_3 4 493.8031311035156 2 493.803291 985.59203 0.15608 7.7071E-05 0.086496 4.2712E-05 0.24257 0.00011978 493.80332411660845 48.234 0.57629 51.474 51.175 51.751 3.2405 50 35 2 0 0 0 0.43153 1 10450 10450 6.2058 0 1 104920 + 24577 17674 15248 15257 28823 28823 0.09865735714231505 LNKKIARI 8 Unmodified _LNKKIARI_ 0 0 0 HSMAR1_dup409|chr9:130758733-130759676:-|1.1841910494893175|0.0321046886077005|5.2|151.0|34|1|anti-sense HSMAR1_dup409|chr9:130758733-130759676:-|1.1841910494893175|0.0321046886077005|5.2|151.0|34|1|anti-sense HSMAR1_dup409|chr9:130758733-130759676:-|1.1841910494893175|0.0321046886077005|5.2|151.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.3240966796875 2 478.324194 954.633835 -0.70881 -0.00033904 0.29675 0.00014194 -0.41207 -0.0001971 478.3243191456543 20.338 0.88905 23.688 23.356 24.245 3.3496 100 78 2 0 0 0 0.82752 1 2079 2079 4.756 0 1 57442 24578 8428 15249 15258 28824 28824 0.15470336193425283 LNKKNIKKCA 10 Unmodified _LNKKNIKKCA_ 0 0 0 L1PA15-16_dup331|chr4:105435584-105437239:+|1.000763049886292|0.1133242427825373|3.14|150.0|36|2|sense L1PA15-16_dup331|chr4:105435584-105437239:+|1.000763049886292|0.1133242427825373|3.14|150.0|36|2|sense L1PA15-16_dup331|chr4:105435584-105437239:+|1.000763049886292|0.1133242427825373|3.14|150.0|36|2|sense MSMS UPN48_class_I_Rep_2 6 580.3538818359375 2 580.352625 1158.6907 NaN NaN NaN NaN NaN NaN NaN 55.272 1 58.828 58.328 59.328 3.5559 0 0 0 0.53105 1 11764 11764 1.6526 0.96225 1 24579 14002 15250 15259 28825 28825 0.11770015687648083 LNKLKHANIHK 11 Unmodified _LNKLKHANIHK_ 0 0 0 REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|118|3|sense REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|118|3|sense MSMS UPN48_class_I_Rep_3 7 439.2710266113281 3 439.270089 1314.78844 NaN NaN NaN NaN NaN NaN NaN 38.038 1 41.698 41.198 42.198 3.6595 0 0 0 0.38417 1 6487 6487 1.4551 0.67859 1 + 24580 28953 15251 15260 28826 28826 0.14363540607951109 LNKLKRAI 8 Unmodified _LNKLKRAI_ 0 0 0 REV__L1P2_dup1466|chr17:60341534-60343056:-|1.3220892467871113|0.0252922173739889|5.71|151.0|11|1|sense REV__L1P2_dup1466|chr17:60341534-60343056:-|1.3220892467871113|0.0252922173739889|5.71|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.3241882324219 2 478.324194 954.633835 -0.36378 -0.000174 -0.12971 -6.2045E-05 -0.49349 -0.00023605 478.32416065195093 19.396 1.0571 23.008 22.571 23.628 3.6118 191 122 2 0 0 0 0.82752 2 1760 1728;1760 8.5933 0 1 73254 + 24581 28845 15252 15261 28827;28828 28828 0.15470336193402545 LNKLKRAI 8 Unmodified _LNKLKRAI_ 0 0 0 REV__L1P2_dup1466|chr17:60341534-60343056:-|1.3220892467871113|0.0252922173739889|5.71|151.0|11|1|sense REV__L1P2_dup1466|chr17:60341534-60343056:-|1.3220892467871113|0.0252922173739889|5.71|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 478.32391357421875 2 478.324194 954.633835 -0.24238 -0.00011593 -0.36224 -0.00017327 -0.60462 -0.0002892 478.3241044265894 20.059 0.68513 23.455 22.975 23.66 3.3963 124 69 2 0 0 0 0.82752 2 1940 1940;2053 4.756 0 1 61308 + 24582 28845 15252 15261 28829;28830 28829 0.15470336193402545 LNKLKRAI 8 Unmodified _LNKLKRAI_ 0 0 0 REV__L1P2_dup1466|chr17:60341534-60343056:-|1.3220892467871113|0.0252922173739889|5.71|151.0|11|1|sense REV__L1P2_dup1466|chr17:60341534-60343056:-|1.3220892467871113|0.0252922173739889|5.71|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 478.3241271972656 2 478.324194 954.633835 NaN NaN NaN NaN NaN NaN NaN 20.354 1 23.761 23.261 24.261 3.4074 0 0 0 0.4044 1 2096 2096 4.756 0 1 + 24583 28845 15252 15261 28831 28831 0.15470336193402545 LNKLLDENKL 10 Unmodified _LNKLLDENKL_ 0 0 0 REV__ENSG00000127989|ENST00000351870|MTERF1 REV__ENSG00000127989|ENST00000351870|MTERF1 MULTI-SECPEP UPN48_class_I_Rep_1 5 600.3534545898438 2 600.353345 1198.69214 0.51109 0.00030684 -0.8086 -0.00048545 -0.29751 -0.00017861 600.3532216229631 65.66 0.077843 69.111 69.078 69.156 3.4516 6 4 2 0 0 0 0.84575 1 14962 14962 1.4819 1.2129 1 47752 + 24584 18889 15253 15262 28832 28832 0.10073928257361331 LNKLLEEFY 9 Unmodified _LNKLLEEFY_ 0 0 0 REV__nc|ENSG00000122779|O15164-2|TRIM24 REV__nc|ENSG00000122779|O15164-2|TRIM24 MULTI-MSMS UPN47_class_I_Rep_2 3 584.8161010742188 2 584.816064 1167.61758 0.40059 0.00023427 -0.18754 -0.00010968 0.21305 0.00012459 584.8159297434156 69.274 0.7614 72.55 72.205 72.966 3.2761 80 61 2 0 0 0 0.19147 1 16761 16761 21.537 3.3906 1 110440 + 24585 18761 15254 15263 28833 28833 0.04047165445990686 LNKLLEEFY 9 Unmodified _LNKLLEEFY_ 0 0 0 REV__nc|ENSG00000122779|O15164-2|TRIM24 REV__nc|ENSG00000122779|O15164-2|TRIM24 MULTI-MSMS UPN47_class_I_Rep_3 4 584.8156127929688 2 584.816064 1167.61758 0.44613 0.0002609 -0.27619 -0.00016152 0.16994 9.9384E-05 584.8159292219758 69.381 0.81195 72.586 72.206 73.018 3.2044 83 63 2 0 0 0 0.26468 2 16834 16834;16869 16.149 3.1066 1 147850 + 24586 18761 15254 15263 28834;28835 28834 0.04047165445990686 LNKNTLKTSA 10 Unmodified _LNKNTLKTSA_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MULTI-MSMS UPN47_class_I_Rep_3 4 545.3173828125 2 545.316763 1088.61897 0.46152 0.00025168 0.13464 7.3423E-05 0.59617 0.0003251 545.316617338891 81.753 2.687 85.076 84.249 86.936 3.3231 527 313 3 0 0 0 0.56354 1 20967 20967 1.3295 0 1 410740 24587 1979 15255 15264 28836 28836 0.07820799534783873 LNKRDTLM 8 Unmodified _LNKRDTLM_ 0 0 0 REV__L1PA7_dup4360|chr5:88793657-88797455:-|16.273566960886217|0.4871454071875122|5.06|151.0|63|2|sense REV__L1PA7_dup4360|chr5:88793657-88797455:-|16.273566960886217|0.4871454071875122|5.06|151.0|63|2|sense MSMS UPN47_class_I_Rep_3 4 495.7721252441406 2 495.773677 989.5328 NaN NaN NaN NaN NaN NaN NaN 50.905 1 54.122 53.622 54.622 3.2163 0 0 0 0.40501 1 11286 11286 3.9444 0 1 + 24588 30100 15256 15265 28837 28837 0.03761516428403411 LNKRQCKP 8 Unmodified _LNKRQCKP_ 0 0 0 L1M1_dup847|chr2:64000160-64002429:-|3.4586797297157084|0.082810141889392|5.38|151.0|5|1|sense L1M1_dup847|chr2:64000160-64002429:-|3.4586797297157084|0.082810141889392|5.38|151.0|5|1|sense L1M1_dup847|chr2:64000160-64002429:-|3.4586797297157084|0.082810141889392|5.38|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 493.78143310546875 2 493.781836 985.549119 NaN NaN NaN NaN NaN NaN NaN 77.62 1 81.142 80.642 81.642 3.5221 0 0 0 0.4044 1 18482 18482 4.756 2.1785 1 24589 8639 15257 15266 28838 28838 0.055766423851537184 LNKVQKKN 8 Unmodified _LNKVQKKN_ 0 0 0 L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|5|1|sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|5|1|sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 486.8055725097656 2 486.303458 970.592364 -0.25039 -0.00012176 0.080398 3.9098E-05 -0.16999 -8.2666E-05 486.3034032661533 41.294 1.3214 44.966 44.493 45.815 3.6719 251 100 4 0 0 0 0.82752 1 8160 8160 2.3027 0 1 939160 24590 11583 15258 15267 28839 28839 0.10589155434092845 LNLEKDKKI 9 Unmodified _LNLEKDKKI_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_1 2 550.83740234375 2 550.837331 1099.66011 -0.069589 -3.8332E-05 -0.25136 -0.00013846 -0.32095 -0.00017679 550.8371095555034 19.601 0.85332 23.213 22.834 23.687 3.6118 164 95 2 0 0 0 0.24936 1 1826 1826 17.113 0 1 86969 24591 2153 15259 15268 28840 28840 0.11426560574227551 LNLFFFKR 8 Unmodified _LNLFFFKR_ 0 0 0 ENST00000608279.1_1_2:133104147-133104555:-|nuORF ENST00000608279.1_1_2:133104147-133104555:-|nuORF ENST00000608279.1_1_2:133104147-133104555:-|nuORF MSMS UPN47_class_I_Rep_1 2 542.8182983398438 2 542.818744 1083.62294 NaN NaN NaN NaN NaN NaN NaN 34.792 1 38.478 37.978 38.978 3.6859 0 0 0 0.40604 1 6305 6305 2.5775 0 1 24592 7695 15260 15269 28841 28841 0.08446933819141123 LNLIWQHNK 9 Unmodified _LNLIWQHNK_ 0 0 0 REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|20|3|sense REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 583.3287963867188 2 583.327465 1164.64038 NaN NaN NaN NaN NaN NaN NaN 30.925 1 34.654 34.154 35.154 3.7293 0 0 0 0.38639 1 5119 5119 3.9444 0.66309 1 + 24593 26862 15261 15270 28842 28842 0.06464229354128292 LNLNMIWKS 9 Unmodified _LNLNMIWKS_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|24|1|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|24|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.8036499023438 2 559.804977 1117.5954 0.48544 0.00027175 -3.6108 -0.0020213 -3.1253 -0.0017496 559.8030106206581 39.529 0.15926 43.034 42.955 43.114 3.5048 17 14 2 0 0 0 0.37599 1 6993 6993 9.3831 0 1 97332 + 24594 27368 15262 15271 28843 28843 0.04130662496572768 LNLPTLASQS 10 Unmodified _LNLPTLASQS_ 0 0 0 AluJb_dup72170|chr10:49969176-49969457:+|2.211506422317246|0.4260422901309|2.38|151.0|14|2|anti-sense AluJb_dup72170|chr10:49969176-49969457:+|2.211506422317246|0.4260422901309|2.38|151.0|14|2|anti-sense AluJb_dup72170|chr10:49969176-49969457:+|2.211506422317246|0.4260422901309|2.38|151.0|14|2|anti-sense MSMS UPN47_class_I_Rep_1 2 522.3369140625 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 107.89 1 111.53 111.03 112.03 3.6355 0 0 0 0.53105 1 26461 26461 5.7319 0 1 24595 60 15263 15272 28844 28844 0.04629421752088092 LNLQYESLK 9 Unmodified _LNLQYESLK_ 0 0 0 REV__L1MB7_dup5121|chr3:195434535-195435183:-|3.775451631046588|0.0111984860758206|8.4|151.0|43|3|anti-sense REV__L1MB7_dup5121|chr3:195434535-195435183:-|3.775451631046588|0.0111984860758206|8.4|151.0|43|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 554.3054809570312 2 554.305864 1106.59717 -0.051177 -2.8368E-05 -0.6013 -0.0003333 -0.65248 -0.00036167 554.3054778328765 39.15 0.72532 42.388 41.999 42.724 3.238 74 50 2 0 0 0 0.11884 1 7670 7670 9.3831 0 1 91320 + 24596 26278 15264 15273 28845 28845 0.048139947861727705 LNLSGHLLS 9 Unmodified _LNLSGHLLS_ 0 0 0 ENST00000502424.1_1_5:14797477-14798464:-|nuORF ENST00000502424.1_1_5:14797477-14798464:-|nuORF ENST00000502424.1_1_5:14797477-14798464:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 477.2743225097656 2 477.274367 952.53418 -0.32309 -0.0001542 0.080889 3.8606E-05 -0.2422 -0.0001156 477.2743391490797 31.094 0.78254 34.823 34.472 35.255 3.7293 79 60 2 0 0 0 0.13631 1 5170 5170 26.884 0 1 73671 24597 7132 15265 15274 28846 28846 0.05601473788817657 LNLSGHLLS 9 Unmodified _LNLSGHLLS_ 0 0 0 ENST00000502424.1_1_5:14797477-14798464:-|nuORF ENST00000502424.1_1_5:14797477-14798464:-|nuORF ENST00000502424.1_1_5:14797477-14798464:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 477.274367 952.53418 -0.25546 -0.00012193 0.099207 4.7349E-05 -0.15626 -7.4578E-05 477.27445869286964 31.498 0.87193 34.967 34.41 35.282 3.4691 0.081097 -6.7982E-05 NaN 26.884 99 69 2 NaN NaN NaN NaN 0 NaN NaN 0 78410 24598 7132 15265 15274 0.05601473788817657 LNLTKHKK 8 Unmodified _LNLTKHKK_ 0 0 0 ENST00000356929.3_1_19:21475855-21476059:-|nuORF ENST00000356929.3_1_19:21475855-21476059:-|nuORF ENST00000356929.3_1_19:21475855-21476059:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 491.3149108886719 2 491.313826 980.613099 -0.099856 -4.9061E-05 0.39819 0.00019564 0.29834 0.00014658 491.3139586176269 24.871 0.27775 28.354 28.215 28.492 3.483 27 23 2 0 0 0 0.82752 1 3356 3356 4.756 0 1 44453 24599 6290 15266 15275 28847 28847 0.12201745813752041 LNLVVNRLGTN 11 Unmodified _LNLVVNRLGTN_ 0 0 0 REV__HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|84|3|sense REV__HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|84|3|sense MSMS UPN48_class_I_Rep_3 7 404.8533630371094 3 404.906816 1211.69862 NaN NaN NaN NaN NaN NaN NaN 40.541 1 44.192 43.692 44.692 3.6509 0 0 0 0.38417 1 7222 7222 1.2148 0.4383 1 + 24600 23791 15267 15276 28848 28848 0.10123866208755317 LNNHRQMLN 9 Unmodified _LNNHRQMLN_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MSMS UPN47_class_I_Rep_3 4 570.2883911132812 2 570.290556 1138.56656 NaN NaN NaN NaN NaN NaN NaN 23.065 1 26.416 25.916 26.916 3.3503 0 0 0 0.39518 1 2867 2867 1.8442 0 1 24601 3145 15268 15277 28849 28849 0.0028193792015827057 LNNIQFRDV 9 Unmodified _LNNIQFRDV_ 0 0 0 REV__L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|8|1|sense REV__L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 559.8035278320312 2 559.80128 1117.58801 NaN NaN NaN NaN NaN NaN NaN 39.157 1 42.661 42.161 43.161 3.5048 0 0 0 0.34878 1 6879 6879 8.1555 0.24537 1 + 24602 25245 15269 15278 28850 28850 0.033916462205070275 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 410.2315368652344 3 410.231412 1227.67241 0.094681 3.8841E-05 0.16143 6.6222E-05 0.25611 0.00010506 410.23136036325445 104.82 0.66766 108.56 108.47 109.14 3.7395 154 102 2 0 0 0 0.55335 1 25743 25743 5.0475 0.85802 1 10357000 + 24603 31703 15270 15279 28851 28851 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 410.2310485839844 3 410.231412 1227.67241 NaN NaN NaN NaN NaN NaN NaN 103.83 1 107.59 107.09 108.09 3.7627 0 0 0 0.53105 1 25525 25525 5.0475 0.3316 1 + 24604 31703 15270 15279 28852 28852 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 410.2320556640625 3 410.231412 1227.67241 -0.41265 -0.00016928 1.0258 0.00042081 0.61312 0.00025152 410.2317067952375 103.66 0.24867 107.18 106.99 107.24 3.5289 79 37 3 0 0 0 0.55335 1 25197 25197 5.0475 0.85802 1 14747000 + 24605 31703 15270 15279 28853 28853 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 410.2320556640625 3 410.231412 1227.67241 -0.61135 -0.0002508 1.1901 0.00048821 0.57874 0.00023742 410.2319950817669 103.89 0.11465 107.41 107.35 107.47 3.5205 24 16 2 0 0 0 0.55335 1 25488 25488 5.0475 0.3316 1 17652000 + 24606 31703 15270 15279 28854 28854 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 410.23162841796875 3 410.231412 1227.67241 -0.14465 -5.9339E-05 0.55303 0.00022687 0.40838 0.00016753 410.2316028973492 103.49 0.18085 107.12 106.97 107.15 3.6209 48 26 2 0 0 0 0.55335 1 24940 24940 5.0475 0.85802 1 17662000 + 24607 31703 15270 15279 28855 28855 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 410.2314758300781 3 410.231412 1227.67241 -0.14465 -5.9341E-05 0.49222 0.00020192 0.34757 0.00014258 410.5660061985705 103.58 0.12342 107.2 107.15 107.28 3.6209 32 19 2 0 0 0 0.53843 1 24971 24971 7.0371 2.8476 1 21605000 + 24608 31703 15270 15279 28856 28856 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 410.2315368652344 3 410.231412 1227.67241 NaN NaN NaN NaN NaN NaN NaN 103.71 1 107.33 106.83 107.83 3.6209 0 0 0 0.53105 1 25004 25004 7.0371 1.6344 1 + 24609 31703 15270 15279 28857 28857 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 410.2313537597656 3 410.231412 1227.67241 0.082168 3.3708E-05 0.72463 0.00029726 0.80679 0.00033097 410.56606747631673 103.36 0.34831 107.07 106.78 107.13 3.7108 91 51 3 0 0 0 0.55335 1 24454 24454 5.0475 0.85802 1 24995000 + 24610 31703 15270 15279 28858 28858 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 410.2315368652344 3 410.231412 1227.67241 0.096574 3.9618E-05 0.56818 0.00023308 0.66475 0.0002727 410.231615579129 103.44 0.12614 107.19 107.14 107.26 3.7434 30 19 2 0 0 0 0.55335 1 24439 24439 5.0475 0.85802 1 16834000 + 24611 31703 15270 15279 28859 28859 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 410.23077392578125 3 410.231412 1227.67241 0.096574 3.9618E-05 0.13671 5.6082E-05 0.23328 9.57E-05 410.2314502844071 104.26 0.26456 107.98 107.93 108.19 3.7192 61 38 2 0 0 0 0.55816 1 24633 24633 4.4062 0.21665 1 15803000 + 24612 31703 15270 15279 28860 28860 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 410.231412 1227.67241 -0.41257 -0.00016925 0.70618 0.0002897 0.29361 0.00012045 410.2316504761731 104.96 0.25584 108.49 108.45 108.7 3.5327 -0.080776 0.00020412 NaN 5.0475 70 39 2 NaN NaN NaN NaN 0 NaN NaN 0 5555300 + 24613 31703 15270 15279 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 410.231412 1227.67241 -0.6115 -0.00025086 1.0737 0.00044046 0.4622 0.00018961 410.231934666223 105.16 0.12944 108.69 108.64 108.77 3.5308 0.12051 0.00065641 NaN 5.0475 37 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5346400 + 24614 31703 15270 15279 0.0676759703726475 LNPKKHNYSK 10 Unmodified _LNPKKHNYSK_ 0 0 0 REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense REV__MLT1E3_dup706|chr5:142959275-142959866:-|1.238332329596184|0.0412538026764552|4.91|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 410.231412 1227.67241 0.096585 3.9622E-05 0.40245 0.0001651 0.49903 0.00020472 410.5659567095948 104.82 0.13789 108.54 108.5 108.63 3.7192 -0.029499 -0.00016969 NaN 5.0475 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2355000 + 24615 31703 15270 15279 0.0676759703726475 LNQAHGLIGFG 11 Unmodified _LNQAHGLIGFG_ 0 0 0 REV__nc|ENSG00000086475|P49903-4|SEPHS1 REV__nc|ENSG00000086475|P49903-4|SEPHS1 MSMS UPN48_class_I_Rep_3 7 563.80419921875 2 563.803823 1125.59309 NaN NaN NaN NaN NaN NaN NaN 35.44 1 39.112 38.612 39.612 3.6721 0 0 0 0.38417 1 5746 5746 2.9952 0 1 + 24616 17968 15271 15280 28861 28861 0.03531950083151969 LNRAITGFEI 10 Unmodified _LNRAITGFEI_ 0 0 0 L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|136|3|sense L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|136|3|sense L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|136|3|sense MSMS UPN47_class_I_Rep_2 3 567.3187255859375 2 567.319306 1132.62406 NaN NaN NaN NaN NaN NaN NaN 45.95 1 49.304 48.804 49.804 3.3534 0 0 0 0.53105 1 9731 9731 4.5289 0.58447 1 24617 14264 15272 15281 28862 28862 0.06305103397380662 LNRGKGILLHS 11 Unmodified _LNRGKGILLHS_ 0 0 0 ENST00000478291.1_1_3:184049262-184049734:+|nuORF ENST00000478291.1_1_3:184049262-184049734:+|nuORF ENST00000478291.1_1_3:184049262-184049734:+|nuORF MSMS UPN48_class_I_Rep_2 6 604.3668212890625 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 102.62 1 106.33 105.83 106.83 3.7108 0 0 0 0.38417 1 24302 24302 2.4985 0.43874 1 24618 6980 15273 15282 28863 28863 0.12459876308275852 LNRKNPVLIQT 11 Unmodified _LNRKNPVLIQT_ 0 0 0 REV__L1MC4a_dup8965|chr17:46073444-46074568:+|2.5581515819929157|0.0218696739574992|6.87|151.0|40|3|sense REV__L1MC4a_dup8965|chr17:46073444-46074568:+|2.5581515819929157|0.0218696739574992|6.87|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 648.3931884765625 2 648.393336 1294.77212 0.51518 0.00033404 -0.49775 -0.00032274 0.017426 1.1299E-05 648.3931005066075 100.24 0.56693 103.69 103.36 103.93 3.4483 177 78 3 0 0 0 0.67264 1 24763 24763 1.1933 0.23107 1 533470 + 24619 27033 15274 15283 28864 28864 0.13652414651232903 LNRKSEREVFF 11 Unmodified _LNRKSEREVFF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS UPN46_class_I_Rep_3 1 475.5928649902344 3 475.593009 1423.7572 0.012883 6.1273E-06 -0.28908 -0.00013749 -0.2762 -0.00013136 475.5927679077283 30.848 1.0461 30.848 30.44 31.486 0 188 82 3 0 0 0 0.65186 1 5092 5092 3.0723 0 1 217120 24620 5840 15275 15284 28865 28865 0.06226922783230293 LNRLRRRRGR 10 Unmodified _LNRLRRRRGR_ 0 0 0 Tigger2a_dup1802|chr9:85650251-85650662:+|2.677657353147562|0.1245578465505341|4.43|151.0|31|3|anti-sense Tigger2a_dup1802|chr9:85650251-85650662:+|2.677657353147562|0.1245578465505341|4.43|151.0|31|3|anti-sense Tigger2a_dup1802|chr9:85650251-85650662:+|2.677657353147562|0.1245578465505341|4.43|151.0|31|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 451.8871154785156 3 451.62386 1351.84975 0.090449 4.0849E-05 1.2657 0.00057163 1.3562 0.00061248 451.62438916156566 46.977 0.44698 50.613 50.346 50.793 3.6363 41 28 2 0 0 0 0.84575 1 9126 9126 0.62683 0.21856 1 124720 24621 33331 15276 15285 28866 28866 0.18789910150621836 LNRRRSKKTKN 11 Unmodified _LNRRRSKKTKN_ 0 0 0 L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|10|2|sense L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|10|2|sense L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 467.6239013671875 3 467.623414 1399.84841 NaN NaN NaN NaN NaN NaN NaN 102.49 1 106.11 105.61 106.61 3.6164 0 0 0 0.38417 1 24712 24712 2.8433 0.4085 1 24622 13753 15277 15286 28867 28867 0.16448231271215263 LNRRRSKKTKN 11 Unmodified _LNRRRSKKTKN_ 0 0 0 L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|10|2|sense L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|10|2|sense L1PA13_dup4191|chr8:47465742-47466578:+|4.039430871701977|0.0214235547580803|7.56|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 467.6240539550781 3 467.623414 1399.84841 NaN NaN NaN NaN NaN NaN NaN 102.31 1 106.09 105.59 106.59 3.776 0 0 0 0.38417 1 24178 24178 2.8433 0.4085 1 24623 13753 15277 15286 28868 28868 0.16448231271215263 LNSLSGLGIL 10 Unmodified _LNSLSGLGIL_ 0 0 0 REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|275|2|anti-sense REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|275|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.79779052734375 2 493.797675 985.580796 -0.31423 -0.00015517 0.52555 0.00025952 0.21132 0.00010435 493.79797805157057 23.728 0.43981 27.458 27.313 27.753 3.7298 63 38 2 0 0 0 0.56333 1 2968 2968 1.4819 0 1 65945 + 24624 29584 15278 15287 28869 28869 0.08742913620108084 LNSPIIPVWL 10 Unmodified _LNSPIIPVWL_ 0 0 0 REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 575.843017578125 2 576.344792 1150.67503 0.42239 0.00024344 -0.025851 -1.4899E-05 0.39654 0.00022854 576.3447619956112 83.428 0.29291 86.967 86.763 87.056 3.5386 44 31 2 0 0 0 0.84575 1 20832 20832 0.40072 0.40072 1 141100 + 24625 22625 15279 15288 28870 28870 0.1057205244223951 LNSQIVKR 8 Unmodified _LNSQIVKR_ 0 0 0 REV__L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|7|1|sense REV__L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.7968444824219 2 479.295633 956.576714 -0.37149 -0.00017805 0.32766 0.00015705 -0.04383 -2.1008E-05 479.2954831199032 16.757 0.7016 20.279 20.051 20.752 3.5224 116 79 2 0 0 0 0.82752 1 1104 1104 4.756 0 1 47954 + 24626 28460 15280 15289 28871 28871 0.09668868917049167 LNSSDIELARR 11 Unmodified _LNSSDIELARR_ 0 0 0 REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1 REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MSMS UPN48_class_I_Rep_2 6 637.3456420898438 2 637.346583 1272.67861 NaN NaN NaN NaN NaN NaN NaN 66.926 1 70.423 69.923 70.923 3.4964 0 0 0 0.38417 1 15328 15328 3.8763 0.27984 1 + 24627 18082 15281 15290 28872 28872 0.053180704781198074 LNSVIFQLF 9 Unmodified _LNSVIFQLF_ 0 0 0 REV__L1MEc_dup2429|chr2:97517053-97517336:+|1.221628774569924|0.4415274119465037|1.47|151.0|15|1|anti-sense REV__L1MEc_dup2429|chr2:97517053-97517336:+|1.221628774569924|0.4415274119465037|1.47|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 540.8060302734375 2 540.808042 1079.60153 NaN NaN NaN NaN NaN NaN NaN 61.06 1 64.441 63.941 64.941 3.3815 0 0 0 0.37476 1 14291 14291 6.7232 0 1 + 24628 28436 15282 15291 28873 28873 0.06491503999745873 LNSWPQEILP 10 Unmodified _LNSWPQEILP_ 0 0 0 AluJr4_dup5470|chr4:139120445-139120717:-|1.7683739849990665|0.2422880102650072|2.87|151.0|23|3|anti-sense AluJr4_dup5470|chr4:139120445-139120717:-|1.7683739849990665|0.2422880102650072|2.87|151.0|23|3|anti-sense AluJr4_dup5470|chr4:139120445-139120717:-|1.7683739849990665|0.2422880102650072|2.87|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_3 7 598.822021484375 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 45.495 1 49.132 48.632 49.632 3.6369 0 0 0 0.53105 1 8717 8717 2.9952 0.41776 1 24629 199 15283 15292 28874 28874 0.033736836775233314 LNTKKNTR 8 Unmodified _LNTKKNTR_ 0 0 0 Tigger2b_Pri_dup891|chr6:107942593-107943572:-|1.891853678062264|0.0202301347567152|6.55|150.0|59|2|anti-sense Tigger2b_Pri_dup891|chr6:107942593-107943572:-|1.891853678062264|0.0202301347567152|6.55|150.0|59|2|anti-sense Tigger2b_Pri_dup891|chr6:107942593-107943572:-|1.891853678062264|0.0202301347567152|6.55|150.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.2925720214844 2 487.790715 973.566878 0.25497 0.00012437 0.030082 1.4674E-05 0.28505 0.00013904 487.7905719046704 87.465 0.28734 91.255 91.081 91.368 3.7905 64 34 2 0 0 0 0.82752 1 20717 20717 4.3292 0 1 372460 24630 33349 15284 15293 28875 28875 0.07903680911658739 LNTLFTYQTI 10 Unmodified _LNTLFTYQTI_ 0 0 0 REV__L1PA16_dup1012|chr2:27390648-27391647:-|1.7581663162543524|0.0998680483792947|4.14|151.0|20|2|sense REV__L1PA16_dup1012|chr2:27390648-27391647:-|1.7581663162543524|0.0998680483792947|4.14|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 607.32958984375 2 607.326796 1212.63904 NaN NaN NaN NaN NaN NaN NaN 48.256 1 51.496 50.996 51.996 3.2405 0 0 0 0.53105 1 10475 10475 0.35063 0.043601 1 + 24631 29310 15285 15294 28876 28876 0.0412255047472172 LNTSGFILVF 10 Unmodified _LNTSGFILVF_ 0 0 0 L1MC4_dup8989|chr6:37967195-37967733:-|1.8117380236422207|0.0091148087405171|7.63|151.0|25|1|anti-sense L1MC4_dup8989|chr6:37967195-37967733:-|1.8117380236422207|0.0091148087405171|7.63|151.0|25|1|anti-sense L1MC4_dup8989|chr6:37967195-37967733:-|1.8117380236422207|0.0091148087405171|7.63|151.0|25|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.8135986328125 2 555.813325 1109.6121 0.49186 0.00027338 0.37232 0.00020694 0.86418 0.00048032 555.8134875336251 79.727 0.15327 83.361 83.262 83.415 3.6331 27 17 2 0 0 0 0.35076 1 18958 18958 24.021 2.2739 1 71949 24632 11535 15286 15295 28877 28877 0.061674866541807205 LNTYVFNIL 9 Unmodified _LNTYVFNIL_ 0 0 0 Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|28|3|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|28|3|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.7891235351562 2 548.8055 1095.59645 0.48344 0.00026531 -0.20567 -0.00011288 0.27776 0.00015244 548.8053959735721 77.563 0.58497 81.174 80.95 81.535 3.6116 73 54 2 0 0 0 0.32219 1 18466 18466 12.532 0.89125 1 98651 24633 478 15287 15296 28878 28878 0.052472001371370425 LNTYVFNIL 9 Unmodified _LNTYVFNIL_ 0 0 0 Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|28|3|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|28|3|sense Charlie1a_dup4423|chr13:41007791-41008958:+|4.4032961532605785|0.0162104588665766|8.09|151.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 548.789306640625 2 548.8055 1095.59645 NaN NaN NaN NaN NaN NaN NaN 78.001 1 81.623 81.123 82.123 3.6216 0 0 0 0.26661 1 18453 18453 12.532 0.89125 1 24634 478 15287 15296 28879 28879 0.052472001371370425 LNVAFRLP 8 Unmodified _LNVAFRLP_ 0 0 0 REV__L1MC1_dup485|chr1:110919586-110921453:+|1.5715837984297902|0.0459540420242948|5.1|151.0|15|1|sense REV__L1MC1_dup485|chr1:110919586-110921453:+|1.5715837984297902|0.0459540420242948|5.1|151.0|15|1|sense MSMS UPN47_class_I_Rep_2 3 465.2704162597656 2 465.281995 928.549437 NaN NaN NaN NaN NaN NaN NaN 100.07 1 103.57 103.07 104.07 3.4974 0 0 0 0.40604 1 24484 24484 2.5775 0 1 + 24635 26570 15288 15297 28880 28880 0.08230385376668892 LNVAPLAVF 9 Unmodified _LNVAPLAVF_ 0 0 0 ENST00000485869.1_1_2:130940017-130940434:+|nuORF;ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B ENST00000485869.1_1_2:130940017-130940434:+|nuORF ENST00000485869.1_1_2:130940017-130940434:+|nuORF MSMS UPN47_class_I_Rep_3 4 472.28338623046875 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 93.944 1 97.351 96.851 97.851 3.4068 0 0 0 0.39518 1 23399 23399 1.8442 0.19162 1 24636 3612 15289 15298 28881 28881 0.08027849799566411 LNVIKQVRNR 10 Unmodified _LNVIKQVRNR_ 0 0 0 L1MEc_dup2572|chr2:113937406-113939017:-|7.499260566940518|0.4471631963677381|4.07|151.0|117|3|anti-sense L1MEc_dup2572|chr2:113937406-113939017:-|7.499260566940518|0.4471631963677381|4.07|151.0|117|3|anti-sense L1MEc_dup2572|chr2:113937406-113939017:-|7.499260566940518|0.4471631963677381|4.07|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_3 4 620.3865356445312 2 620.385845 1238.75714 NaN NaN NaN NaN NaN NaN NaN 107.39 1 110.93 110.43 111.43 3.5382 0 0 0 0.53105 1 26223 26223 3.5965 0 1 24637 13083 15290 15299 28882 28882 0.1473096757388248 LNVKCKTMKL 10 Unmodified _LNVKCKTMKL_ 0 0 0 L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.3428344726562 2 589.343412 1176.67227 0.56626 0.00033372 -0.68455 -0.00040344 -0.11829 -6.9715E-05 589.3428030160536 86.855 0.33553 90.296 90.282 90.617 3.4407 56 44 2 0 0 0 0.56354 1 21636 21636 1.3295 0.13619 1 109600 24638 11105 15291 15300 28883 28883 0.09100137721407009 LNVKCKTMKL 10 Unmodified _LNVKCKTMKL_ 0 0 0 L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 589.3434448242188 2 589.343412 1176.67227 0.48044 0.00028315 -0.2926 -0.00017244 0.18784 0.0001107 589.3431386556738 84.758 0.68389 88.452 87.943 88.627 3.6937 162 95 2 0 0 0 0.56155 1 20087 20087 2.7352 2.7352 1 912220 24639 11105 15291 15300 28884 28884 0.09100137721407009 LNVKCKTMKL 10 Unmodified _LNVKCKTMKL_ 0 0 0 L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 589.3432006835938 2 589.343412 1176.67227 0.47947 0.00028257 -1.1711 -0.00069017 -0.69162 -0.0004076 589.3422085289359 82.469 0.1122 86.138 86.105 86.217 3.669 16 13 2 0 0 0 0.84575 1 19598 19598 1.4819 0.15237 1 66325 24640 11105 15291 15300 28885 28885 0.09100137721407009 LNVKCKTMKL 10 Unmodified _LNVKCKTMKL_ 0 0 0 L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.343412 1176.67227 0.54455 0.00032093 -0.45872 -0.00027034 0.085834 5.0585E-05 589.3430082614269 88.465 0.16457 88.465 88.409 88.574 0 0.0063417 -0.00010209 NaN 2.7352 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2031500 24641 11105 15291 15300 0.09100137721407009 LNVKCKTMKL 10 Unmodified _LNVKCKTMKL_ 0 0 0 L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense L1MC1_dup11741|chr17:21157956-21159236:+|2.703944348289664|0.0332134881419907|6.35|151.0|42|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 589.343412 1176.67227 0.48044 0.00028315 -0.2926 -0.00017244 0.18784 0.0001107 589.3431386556738 84.758 0.68389 88.452 87.943 88.627 3.6937 -0.0063417 9.3707E-05 NaN 2.7352 162 95 2 NaN NaN NaN NaN 0 NaN NaN 0 912220 24642 11105 15291 15300 0.09100137721407009 LNVKNRQNQRK 11 Unmodified _LNVKNRQNQRK_ 0 0 0 L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|19|2|sense L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|19|2|sense L1ME3_dup1105|chr2:111791083-111791904:+|1.1244863262125386|0.0337206085994679|5.06|151.0|19|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.6080017089844 3 466.607652 1396.80113 0.23026 0.00010744 0.71912 0.00033555 0.94938 0.00044299 466.6079816383405 96.587 0.25688 96.587 96.392 96.649 0 51 31 3 0 0 0 0.6724 1 23477 23477 1.2148 0.70888 1 278340 24643 12580 15292 15301 28886 28886 0.11859952000190788 LNVKQHAT 8 Unmodified _LNVKQHAT_ 0 0 0 REV__L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|2|1|sense REV__L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 455.75860595703125 2 455.758884 909.503215 -0.38455 -0.00017526 0.0056695 2.5839E-06 -0.37888 -0.00017268 455.75869555304683 27.01 0.79316 30.776 30.406 31.199 3.7662 78 61 2 0 0 0 0.82752 1 4023 4023 8.5933 0 1 106910 + 24644 29361 15293 15302 28887 28887 0.044843204745689036 LNVLEGWTL 9 Unmodified _LNVLEGWTL_ 0 0 0 REV__nc|ENSG00000183833|Q7Z4T9-2|CFAP91 REV__nc|ENSG00000183833|Q7Z4T9-2|CFAP91 MULTI-MSMS UPN47_class_I_Rep_1 2 523.3034057617188 2 522.78985 1043.56515 0.3221 0.00016839 -0.40551 -0.00021199 -0.083403 -4.3602E-05 522.7895681482773 77.245 0.707 80.66 80.364 81.071 3.4149 125 62 3 0 0 0 0.33908 1 19219 19219 11.495 2.7493 1 256120 + 24645 32083 15294 15303 28888 28888 0.045106271030590506 LNVNLPRQR 9 Unmodified _LNVNLPRQR_ 0 0 0 ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 ENST00000343889.8_1_1:2411150-2434522:+|nuORF ENST00000343889.8_1_1:2411150-2434522:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.3318481445312 2 555.330539 1108.64652 NaN NaN NaN NaN NaN NaN NaN 101.1 1 104.6 104.1 105.1 3.5063 0 0 0 0.39518 1 24687 24687 1.8442 0.19162 1 24646 3546 15295 15304 28889 28889 0.09654747585659607 LNVSRRVS 8 Unmodified _LNVSRRVS_ 0 0 0 REV__nc|ENSG00000133816|O94851-2|MICAL2 REV__nc|ENSG00000133816|O94851-2|MICAL2 MULTI-MSMS UPN48_class_I_Rep_2 6 465.7772216796875 2 465.777608 929.540663 0.1869 8.7056E-05 -0.36914 -0.00017194 -0.18224 -8.4882E-05 465.7773334138888 72.637 0.61394 76.202 75.979 76.593 3.5645 80 54 2 0 0 0 0.82752 1 16981 16981 2.0598 0.21551 1 168200 + 24647 19071 15296 15305 28890 28890 0.07307411740191583 LNVTPLLV 8 Unmodified _LNVTPLLV_ 0 0 0 REV__ENST00000477184.5_1_7:102123232-102123718:-|nuORF REV__ENST00000477184.5_1_7:102123232-102123718:-|nuORF MSMS UPN46_class_I_Rep_3 1 434.7802429199219 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 38.741 1 38.741 38.241 39.241 0 0 0 0 0.40746 1 7396 7396 0.69038 0 1 + 24648 22366 15297 15306 28891 28891 0.10388447425305003 LNVTPLLV 8 Unmodified _LNVTPLLV_ 0 0 0 REV__ENST00000477184.5_1_7:102123232-102123718:-|nuORF REV__ENST00000477184.5_1_7:102123232-102123718:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 435.2510070800781 2 434.778754 867.542954 -0.4043 -0.00017578 0.33478 0.00014556 -0.069511 -3.0222E-05 434.7802773513212 71.599 0.22491 74.817 74.735 74.96 3.2188 23 15 2 0 0 0 0.72333 1 17619 17619 0.69038 0 1 36540 + 24649 22366 15297 15306 28892 28892 0.10388447425305003 LNVWRNST 8 Unmodified _LNVWRNST_ 0 0 0 L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|156|1|anti-sense L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|156|1|anti-sense L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|156|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.26190185546875 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.73 1 104.58 104.08 105.08 3.8537 0 0 0 0.40643 1 23836 23836 2.0598 0.21551 1 24650 9973 15298 15307 28893 28893 0.014314189862375315 LNWDNFFY 8 Unmodified _LNWDNFFY_ 0 0 0 REV__ENSG00000108306.13,FBXL20,chr17,-,I7.1,39297196,39298989|30|9.13|1|intron REV__ENSG00000108306.13,FBXL20,chr17,-,I7.1,39297196,39298989|30|9.13|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 559.7507934570312 2 559.750724 1117.4869 0.3742 0.00020946 -0.0363 -2.0319E-05 0.3379 0.00018914 559.7506931537375 71.219 0.36427 74.594 74.44 74.804 3.3751 44 31 2 0 0 0 0.82752 1 17321 17321 2.8892 0 1 96882 + 24651 18376 15299 15308 28894 28894 -0.06714805482192787 LNWGRAQRS 9 Unmodified _LNWGRAQRS_ 0 0 0 REV__ENST00000511322.1_1_17:47452843-47457427:+|nuORF REV__ENST00000511322.1_1_17:47452843-47457427:+|nuORF MSMS UPN48_class_I_Rep_1 5 544.289794921875 2 544.291414 1086.56827 NaN NaN NaN NaN NaN NaN NaN 41.544 1 45.05 44.55 45.55 3.506 0 0 0 0.39518 1 7585 7585 1.8442 0.19162 1 + 24652 22739 15300 15309 28895 28895 0.028453150003997507 LNWHQRKH 8 Unmodified _LNWHQRKH_ 0 0 0 ENST00000482023.5_1_1:249144411-249145095:-|nuORF;ENST00000533927.5_1_1:249144411-249149911:-|nuORF;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692 ENST00000482023.5_1_1:249144411-249145095:-|nuORF ENST00000482023.5_1_1:249144411-249145095:-|nuORF MSMS UPN48_class_I_Rep_3 7 559.802490234375 2 559.801949 1117.58934 NaN NaN NaN NaN NaN NaN NaN 22.568 1 26.319 25.819 26.819 3.7507 0 0 0 0.40746 1 2323 2323 0.69038 0 1 24653 4511 15301 15310 28896 28896 0.03525325099940346 LNWISSKLK 9 Unmodified _LNWISSKLK_ 0 0 0 L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|34|3|sense L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|34|3|sense L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|34|3|sense MSMS UPN48_class_I_Rep_1 5 544.8244018554688 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 88.381 1 92.003 91.503 92.503 3.6229 0 0 0 0.39598 1 21205 21205 1.6526 0 1 24654 10902 15302 15311 28897 28897 0.09866595265361866 LNWTDKPI 8 Unmodified _LNWTDKPI_ 0 0 0 REV__ENSG00000043093|ENST00000292782|DCUN1D1 REV__ENSG00000043093|ENST00000292782|DCUN1D1 MSMS UPN47_class_I_Rep_2 3 493.7666015625 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 38.128 1 41.516 41.016 42.016 3.3879 0 0 0 0.40659 1 7349 7349 1.8442 0 1 + 24655 17654 15303 15312 28898 28898 0.029940714145027414 LNYANVKHQI 10 Unmodified _LNYANVKHQI_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 600.3298950195312 2 600.330205 1198.64586 0.41438 0.00024876 -0.11463 -6.8815E-05 0.29975 0.00017995 600.3301238068926 43.172 0.96346 46.934 46.526 47.489 3.7617 162 75 3 0 0 0 0.29514 1 8110 8110 34.402 3.1334 1 335880 + 24656 20773 15304 15313 28899 28899 0.054479081459248846 LNYHLNLPA 9 Unmodified _LNYHLNLPA_ 0 0 0 L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|169|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|169|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|169|3|anti-sense MSMS UPN47_class_I_Rep_2 3 527.7866821289062 2 527.787641 1053.56073 NaN NaN NaN NaN NaN NaN NaN 25.523 1 29.006 28.506 29.506 3.483 0 0 0 0.38639 1 3556 3556 3.9444 0 1 24657 15039 15305 15314 28900 28900 0.03609162680118061 LNYLFSFGQS 10 Unmodified _LNYLFSFGQS_ 0 0 0 REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|212|3|anti-sense REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|212|3|anti-sense MSMS UPN48_class_I_Rep_2 6 588.2908935546875 2 588.290214 1174.56587 NaN NaN NaN NaN NaN NaN NaN 70.456 1 73.992 73.492 74.492 3.5359 0 0 0 0.53105 1 16390 16390 4.897 0 1 + 24658 25450 15306 15315 28901 28901 -0.014425782479065674 LNYLGDLSPL 10 Unmodified _LNYLGDLSPL_ 0 0 0 REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|285|2|anti-sense REV__L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|285|2|anti-sense MSMS UPN48_class_I_Rep_3 7 552.8002319335938 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 63.077 1 66.586 66.086 67.086 3.5091 0 0 0 0.53105 1 14073 14073 2.9952 0 1 + 24659 28818 15307 15316 28902 28902 0.03862592411906007 LNYPLSGTEI 10 Unmodified _LNYPLSGTEI_ 0 0 0 REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.7893676757812 2 553.790047 1105.56554 0.39247 0.00021734 0.038817 2.1496E-05 0.43128 0.00023884 553.7899273897068 64.437 0.90509 67.793 67.421 68.326 3.3557 165 85 2 0 0 0 0.40112 1 15403 15403 19.362 2.249 1 404980 + 24660 29033 15308 15317 28903 28903 0.01698002032230761 LNYPLSGTEI 10 Unmodified _LNYPLSGTEI_ 0 0 0 REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.7901000976562 2 553.790047 1105.56554 0.38382 0.00021256 0.044225 2.4491E-05 0.42805 0.00023705 553.7899914781723 64.83 1.0107 68.086 67.594 68.605 3.2556 156 80 3 0 0 0 0.25511 1 15452 15452 38.176 2.0485 1 475820 + 24661 29033 15308 15317 28904 28904 0.01698002032230761 LNYPLSGTEI 10 Unmodified _LNYPLSGTEI_ 0 0 0 REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 553.790047 1105.56554 0.38658 0.00021408 -0.42915 -0.00023766 -0.042567 -2.3573E-05 553.7899060476195 64.983 0.050041 68.339 68.326 68.376 3.3557 0.12652 -0.00051573 NaN 38.176 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 56008 + 24662 29033 15308 15317 0.01698002032230761 LNYPLSGTEI 10 Unmodified _LNYPLSGTEI_ 0 0 0 REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense REV__L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|62|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 553.790047 1105.56554 0.38382 0.00021256 0.044225 2.4491E-05 0.42805 0.00023705 553.7899914781723 64.83 1.0107 68.086 67.594 68.605 3.2556 -0.12652 8.5695E-06 NaN 38.176 156 80 3 NaN NaN NaN NaN 0 NaN NaN 0 475820 + 24663 29033 15308 15317 0.01698002032230761 LNYRNDFY 8 Unmodified _LNYRNDFY_ 0 0 0 REV__L1MC4_dup2203|chr2:32483381-32483956:-|1.3981196151557458|0.0268744213083712|5.7|151.0|20|3|sense REV__L1MC4_dup2203|chr2:32483381-32483956:-|1.3981196151557458|0.0268744213083712|5.7|151.0|20|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.2606201171875 2 552.759081 1103.50361 0.070993 3.9242E-05 0.44901 0.0002482 0.52001 0.00028744 552.7592783999197 42.252 0.67261 45.613 45.24 45.913 3.3611 92 50 2 0 0 0 0.82752 1 8632 8632 2.0598 0.40713 1 95912 + 24664 26879 15309 15318 28905 28905 -0.04400304596242677 LPAAGQPAQK 10 Unmodified _LPAAGQPAQK_ 0 0 0 L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|1|1|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|1|1|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 490.78173828125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 64.021 1 67.496 66.996 67.996 3.4743 0 0 0 0.53105 1 14439 14439 1.6526 0.17072 1 24665 15189 15310 15319 28906 28906 0.05448876163075056 LPAALNVRR 9 Unmodified _LPAALNVRR_ 0 0 0 ENST00000337768.9_1_2:27886265-27886361:-|nuORF ENST00000337768.9_1_2:27886265-27886361:-|nuORF ENST00000337768.9_1_2:27886265-27886361:-|nuORF MSMS UPN46_class_I_Rep_3 1 505.31707763671875 2 505.3169 1008.61925 NaN NaN NaN NaN NaN NaN NaN 108.42 1 108.42 107.92 108.92 0 0 0 0 0.35339 1 26512 26512 7.9102 0 1 24666 6214 15311 15320 28907 28907 0.11528264045273318 LPAALNVRR 9 Unmodified _LPAALNVRR_ 0 0 0 ENST00000337768.9_1_2:27886265-27886361:-|nuORF ENST00000337768.9_1_2:27886265-27886361:-|nuORF ENST00000337768.9_1_2:27886265-27886361:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 505.3162841796875 2 505.3169 1008.61925 0.36733 0.00018562 -0.4846 -0.00024487 -0.11726 -5.9255E-05 505.3165458899531 107.84 0.15777 111.37 111.28 111.44 3.5345 38 16 3 0 0 0 0.33654 1 26096 26096 11.64 0.81637 1 28185000 24667 6214 15311 15320 28908 28908 0.11528264045273318 LPAAQLSVPL 10 Unmodified _LPAAQLSVPL_ 0 0 0 ENST00000600128.5_1_19:8140291-8146354:-|nuORF ENST00000600128.5_1_19:8140291-8146354:-|nuORF ENST00000600128.5_1_19:8140291-8146354:-|nuORF MSMS UPN46_class_I_Rep_3 1 504.8096008300781 2 504.808042 1007.60153 NaN NaN NaN NaN NaN NaN NaN 108.77 1 108.77 108.27 109.27 0 0 0 0 0.53105 1 26625 26625 13.042 0.80181 1 24668 7660 15312 15321 28909 28909 0.0980350399973986 LPAARQTR 8 Unmodified _LPAARQTR_ 0 0 0 REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 456.772216796875 2 456.772326 911.530098 0.19892 9.086E-05 -0.30622 -0.00013987 -0.1073 -4.9013E-05 456.77212811937767 84.216 0.27915 84.216 84.035 84.314 0 49 28 2 0 0 0 0.82752 1 20022 20022 4.3292 0.73274 1 1363200 + 24669 22883 15313 15322 28910 28910 0.07079429085740685 LPAARQTR 8 Unmodified _LPAARQTR_ 0 0 0 REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 456.7722473144531 2 456.772326 911.530098 -0.019571 -8.9396E-06 -0.084589 -3.8638E-05 -0.10416 -4.7577E-05 456.77219615677177 81.007 0.73104 84.391 84.128 84.859 3.3839 155 90 2 0 0 0 0.82752 1 20239 20239 1.8442 0.36234 1 315450 + 24670 22883 15313 15322 28911 28911 0.07079429085740685 LPAARQTR 8 Unmodified _LPAARQTR_ 0 0 0 REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 456.77215576171875 2 456.772326 911.530098 -0.13916 -6.3565E-05 0.23051 0.00010529 0.091349 4.1726E-05 456.77232281723144 81.037 0.66075 84.36 84.077 84.738 3.3231 152 78 3 0 0 0 0.82752 1 20210 20210 1.8442 0.36234 1 367650 + 24671 22883 15313 15322 28912 28912 0.07079429085740685 LPAARQTR 8 Unmodified _LPAARQTR_ 0 0 0 REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 456.7723388671875 2 456.772326 911.530098 0.16545 7.5574E-05 -0.083496 -3.8139E-05 0.081955 3.7435E-05 456.77214724280805 80.643 0.59013 84.288 84.096 84.686 3.6446 121 81 2 0 0 0 0.82752 1 19112 19112 4.3292 0.73274 1 656100 + 24672 22883 15313 15322 28913 28913 0.07079429085740685 LPAARQTR 8 Unmodified _LPAARQTR_ 0 0 0 REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 456.77178955078125 2 456.772326 911.530098 0.21241 9.7024E-05 -0.13814 -6.3098E-05 0.074273 3.3926E-05 456.77216418211856 80.624 0.52743 84.287 84.14 84.667 3.6635 92 69 2 0 0 0 0.82752 1 19047 19047 4.3292 0.73274 1 445190 + 24673 22883 15313 15322 28914 28914 0.07079429085740685 LPAARSRAVL 10 Unmodified _LPAARSRAVL_ 0 0 0 ENST00000526627.1_1_5:150158414-150175102:+|nuORF ENST00000526627.1_1_5:150158414-150175102:+|nuORF ENST00000526627.1_1_5:150158414-150175102:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 527.3303833007812 2 527.330008 1052.64546 0.34261 0.00018067 0.020552 1.0838E-05 0.36316 0.00019151 527.3299201803037 107.84 0.14978 111.38 111.31 111.46 3.5345 38 15 4 0 0 0 0.47413 1 26104 26104 13.906 0 1 34801000 24674 7262 15314 15323 28915 28915 0.12124533216751843 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.8304443359375 2 540.82984 1079.64513 0.36577 0.00019782 -1.8705 -0.0010116 -1.5047 -0.0008138 540.828689482095 107.99 0.38173 107.99 107.91 108.29 0 51 30 3 0 0 0 0.28469 2 26356 26356;26379 17.113 3.2068 1 59172000 + 24675 18331 15315 15324 28916;28917 28916 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.8306884765625 2 540.82984 1079.64513 NaN NaN NaN NaN NaN NaN NaN 108.18 1 108.18 107.68 108.68 0 0 0 0 0.20858 1 26436 26436 17.113 3.2068 1 + 24676 18331 15315 15324 28918 28918 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.8312377929688 2 540.82984 1079.64513 0.52576 0.00028435 0.060554 3.2749E-05 0.58632 0.0003171 540.8298435218198 107.85 0.1888 111.53 111.45 111.64 3.6724 31 11 5 0 0 0 0.28469 1 26435 26435 17.113 3.2068 1 42572000 + 24677 18331 15315 15324 28919 28919 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 540.8302001953125 2 540.82984 1079.64513 0.38328 0.00020729 0.25871 0.00013992 0.64198 0.0003472 540.8298995383489 107.86 0.44687 111.49 111.39 111.84 3.6313 102 37 5 0 0 0 0.28469 1 26012 26012 17.113 3.2068 1 90433000 + 24678 18331 15315 15324 28920 28920 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 540.82984 1079.64513 0.59174 0.00032003 0.4224 0.00022845 1.0141 0.00054848 540.8300290211236 107.85 0.21387 111.39 111.32 111.54 3.5345 -0.091586 5.3648E-05 NaN 17.113 59 24 4 NaN NaN NaN NaN 0 NaN NaN 0 42755000 + 24679 18331 15315 15324 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 540.82984 1079.64513 0.48671 0.00026323 0.74411 0.00040244 1.2308 0.00066567 540.8301641617727 107.85 0.26993 111.39 111.33 111.6 3.5382 -0.09223 0.00040163 NaN 17.113 62 29 5 NaN NaN NaN NaN 0 NaN NaN 0 48212000 + 24680 18331 15315 15324 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 540.82984 1079.64513 0.47765 0.00025833 0.70767 0.00038273 1.1853 0.00064106 540.8300039198177 107.91 0.035278 111.58 111.55 111.59 3.6746 0.10379 0.00036221 NaN 17.113 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 1106300 + 24681 18331 15315 15324 0.10849113496897189 LPAARVGNAVL 11 Unmodified _LPAARVGNAVL_ 0 0 0 REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF REV__ENST00000483775.1_1_7:151273415-151329218:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 540.82984 1079.64513 0.53762 0.00029076 0.48323 0.00026134 1.0208 0.0005521 540.8300428634285 107.82 0.21353 111.5 111.44 111.66 3.6813 0.021631 0.00011944 NaN 17.113 47 21 4 NaN NaN NaN NaN 0 NaN NaN 0 68758000 + 24682 18331 15315 15324 0.10849113496897189 LPAATALVPLS 11 Unmodified _LPAATALVPLS_ 0 0 0 ENST00000417559.1_1_10:82289453-82295456:-|nuORF ENST00000417559.1_1_10:82289453-82295456:-|nuORF ENST00000417559.1_1_10:82289453-82295456:-|nuORF MSMS UPN47_class_I_Rep_1 2 526.8217163085938 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 108.99 1 112.6 112.1 113.1 3.6046 0 0 0 0.11455 1 26852 26852 21.537 9.2963 1 24683 6659 15316 15325 28921 28921 0.10399773171229754 LPACYRAR 8 Unmodified _LPACYRAR_ 0 0 0 ENST00000256646.6_1_1:120457390-120457519:-|nuORF ENST00000256646.6_1_1:120457390-120457519:-|nuORF ENST00000256646.6_1_1:120457390-120457519:-|nuORF MSMS UPN47_class_I_Rep_1 2 475.3089294433594 2 475.255454 948.496355 NaN NaN NaN NaN NaN NaN NaN 98.253 1 102.04 101.54 102.54 3.7861 0 0 0 0.40738 1 24326 24326 0.79363 0 1 24684 5929 15317 15326 28922 28922 0.020046843223326505 LPAIPMPYV 9 Unmodified _LPAIPMPYV_ 0 0 0 REV__THE1B-int_dup1203|chr4:98366454-98368013:+|1.474809535140423|0.1995515536726299|2.89|151.0|13|1|sense REV__THE1B-int_dup1203|chr4:98366454-98368013:+|1.474809535140423|0.1995515536726299|2.89|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 500.7799987792969 2 500.780439 999.546325 NaN NaN NaN NaN NaN NaN NaN 30.139 1 33.774 33.274 34.274 3.6351 0 0 0 0.39326 1 4369 4369 2.3027 0 1 + 24685 32241 15318 15327 28923 28923 0.046533742076235285 LPAISTYLL 9 Unmodified _LPAISTYLL_ 0 0 0 REV__ENSG00000188324|ENST00000358433|OR6C6 REV__ENSG00000188324|ENST00000358433|OR6C6 MSMS UPN47_class_I_Rep_2 3 495.79638671875 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 83.27 1 86.682 86.182 87.182 3.4116 0 0 0 0.39326 1 20754 20754 2.3027 0 1 + 24686 20965 15319 15328 28924 28924 0.0845269925117691 LPAKHGQRR 9 Unmodified _LPAKHGQRR_ 0 0 0 ENST00000590563.1_1_17:42117584-42117671:-|nuORF ENST00000590563.1_1_17:42117584-42117671:-|nuORF ENST00000590563.1_1_17:42117584-42117671:-|nuORF MSMS UPN47_class_I_Rep_1 2 531.8168334960938 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 80.038 1 83.503 83.003 84.003 3.465 0 0 0 0.38639 1 19949 19949 3.9444 0.94915 1 24687 7614 15320 15329 28925 28925 0.09229898134049108 LPALEKKIN 9 Unmodified _LPALEKKIN_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.3219604492188 2 513.321317 1024.62808 0.37249 0.00019121 1.3083 0.0006716 1.6808 0.00086281 513.3218479113305 109.08 0.15392 112.68 112.61 112.76 3.6046 20 8 3 0 0 0 0.30034 1 26878 26878 13.906 0 1 24760000 24688 12987 15321 15330 28926 28926 0.11675192891107145 LPALEKKIN 9 Unmodified _LPALEKKIN_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 513.321317 1024.62808 0.37249 0.00019121 1.3083 0.0006716 1.6808 0.00086281 513.3218479113305 109.08 0.15392 112.68 112.61 112.76 3.6046 -0.12773 -0.00053154 NaN 13.906 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 24760000 24689 12987 15321 15330 0.11675192891107145 LPALEKKIN 9 Unmodified _LPALEKKIN_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 513.321317 1024.62808 0.29967 0.00015383 1.9756 0.0010141 2.2753 0.0011679 513.3222701289711 109.34 0.47657 112.87 112.68 113.15 3.5307 0.056655 0.00015349 NaN 13.906 165 64 3 NaN NaN NaN NaN 0 NaN NaN 0 9232800 24690 12987 15321 15330 0.11675192891107145 LPALEKKIN 9 Unmodified _LPALEKKIN_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 513.321317 1024.62808 0.33572 0.00017233 1.8871 0.00096867 2.2228 0.001141 513.3222108477544 109.29 0.48804 112.83 112.69 113.18 3.5347 0.016864 6.2604E-05 NaN 13.906 149 65 3 NaN NaN NaN NaN 0 NaN NaN 0 7521000 24691 12987 15321 15330 0.11675192891107145 LPALEKKIN 9 Unmodified _LPALEKKIN_ 0 0 0 L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense L1MEb_dup16|chr1:24775089-24776496:-|1.0298361206236557|0.0616212704369612|4.06|150.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 513.321317 1024.62808 0.23786 0.0001221 1.6262 0.00083476 1.8641 0.00095686 513.3220585621527 109.23 0.13087 112.87 112.75 112.88 3.6321 0.054212 -0.00020523 NaN 13.906 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5458700 24692 12987 15321 15330 0.11675192891107145 LPALFGFLL 9 Unmodified _LPALFGFLL_ 0 0 0 REV__L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|69|1|anti-sense REV__L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|69|1|anti-sense MSMS UPN47_class_I_Rep_1 2 495.8064880371094 2 495.804771 989.59499 NaN NaN NaN NaN NaN NaN NaN 82.452 1 85.964 85.464 86.464 3.5122 0 0 0 0.39326 1 20598 20598 2.3027 0 1 + 24693 25110 15322 15331 28927 28927 0.09977610839052886 LPALKRIA 8 Unmodified _LPALKRIA_ 0 0 0 L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|8|1|sense L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|8|1|sense L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 441.29949951171875 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 31.925 1 35.394 34.894 35.894 3.4691 0 0 0 0.388 1 5467 5467 12.532 0 1 24694 13536 15323 15332 28928 28928 0.14075262273354383 LPALRSIGL 9 Unmodified _LPALRSIGL_ 0 0 0 ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB ENST00000483821.1_1_6:33162461-33163032:-|nuORF ENST00000483821.1_1_6:33162461-33163032:-|nuORF MSMS UPN47_class_I_Rep_1 2 470.30279541015625 2 470.302927 938.591301 NaN NaN NaN NaN NaN NaN NaN 62.153 1 65.521 65.021 66.021 3.3681 0 0 0 0.15288 1 14623 14623 19.362 3.2128 1 24695 3278 15324 15333 28929 28929 0.11954941065175717 LPAPGLPGPR 10 Unmodified _LPAPGLPGPR_ 0 0 0 ENST00000396137.4_1_5:78533150-78533414:+|nuORF ENST00000396137.4_1_5:78533150-78533414:+|nuORF ENST00000396137.4_1_5:78533150-78533414:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 487.790771484375 2 487.792727 973.5709 0.24907 0.00012149 -1.1788 -0.00057499 -0.92968 -0.00045349 487.79185571128846 74.755 0.77141 78.345 77.885 78.656 3.59 135 85 2 0 0 0 0.56333 1 17680 17680 1.4819 0 1 213500 24696 6564 15325 15334 28930 28930 0.08305770405377189 LPAPRRLRWK 10 Unmodified _LPAPRRLRWK_ 0 0 0 nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT;ENSG00000070748|ENST00000337653|CHAT nc|ENSG00000070748|P28329-3|CHAT nc|ENSG00000070748|P28329-3|CHAT MSMS UPN46_class_I_Rep_3 1 646.9082641601562 2 646.906748 1291.79894 NaN NaN NaN NaN NaN NaN NaN 47.71 1 47.71 47.21 48.21 0 0 0 0 0.53105 1 9888 9888 0.45834 0.057624 1 24697 1077 15326 15335 28931 28931 0.16471568053043484 LPAQRRAT 8 Unmodified _LPAQRRAT_ 0 0 0 ENST00000512593.5_1_5:176817073-176817265:+|nuORF ENST00000512593.5_1_5:176817073-176817265:+|nuORF ENST00000512593.5_1_5:176817073-176817265:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 456.7722473144531 2 456.772326 911.530098 -0.13916 -6.3565E-05 0.23051 0.00010529 0.091349 4.1726E-05 456.77232281723144 81.037 0.66075 84.36 84.077 84.738 3.3231 152 78 3 0 0 0 0.82752 1 20279 20279 4.3292 0 1 367650 24698 7194 15327 15336 28932 28932 0.07079429085752054 LPARRSPGPR 10 Unmodified _LPARRSPGPR_ 0 0 0 ENST00000533387.5_1_11:134123508-134129738:+|nuORF ENST00000533387.5_1_11:134123508-134129738:+|nuORF ENST00000533387.5_1_11:134123508-134129738:+|nuORF MSMS UPN46_class_I_Rep_3 1 553.8300170898438 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 84.531 1 84.531 84.031 85.031 0 0 0 0 0.53105 1 20115 20115 5.7319 2.1354 1 24699 7310 15328 15337 28933 28933 0.09826167305527633 LPARWQRPN 9 Unmodified _LPARWQRPN_ 0 0 0 REV__L1PA4_dup6353|chr9:5031772-5037865:+|3.458301767209713|0.140241684053417|4.62|151.0|366|3|anti-sense REV__L1PA4_dup6353|chr9:5031772-5037865:+|3.458301767209713|0.140241684053417|4.62|151.0|366|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 568.7869873046875 2 569.317432 1136.62031 0.51725 0.00029448 -1.4743 -0.00083934 -0.95705 -0.00054486 569.3165947980932 54.616 0.28605 57.934 57.68 57.966 3.3187 12 12 2 0 0 0 0.12462 1 12353 12353 1.8442 0 1 39893 + 24700 29662 15329 15338 28934 28934 0.057464784141757264 LPASREQRQ 9 Unmodified _LPASREQRQ_ 0 0 0 LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|36|3|anti-sense LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|36|3|anti-sense LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|36|3|anti-sense MSMS UPN46_class_I_Rep_3 1 542.7968139648438 2 542.796529 1083.5785 NaN NaN NaN NaN NaN NaN NaN 101.86 1 101.86 101.36 102.36 0 0 0 0 0.3967 1 24854 24854 1.4819 0 1 24701 15634 15330 15339 28935 28935 0.04005877934991986 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 505.3168029785156 2 505.3169 1008.61925 0.31448 0.00015891 -1.7031 -0.00086061 -1.3886 -0.0007017 505.3159585807981 107.99 0.33447 107.99 107.91 108.25 0 33 24 2 0 0 0 0.30034 2 26352 26352;26380 13.906 3.0821 1 45311000 + 24702 23939 15331 15340 28936;28937 28936 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 505.3169250488281 2 505.3169 1008.61925 0.32903 0.00016627 0.34574 0.00017471 0.67477 0.00034097 505.3169973463203 107.81 0.21249 111.48 111.43 111.64 3.6724 34 13 4 0 0 0 0.21527 1 26422 26422 19.257 7.6167 1 55439000 + 24703 23939 15331 15340 28938 28938 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 505.31695556640625 2 505.3169 1008.61925 0.31027 0.00015678 0.025738 1.3006E-05 0.33601 0.00016979 505.31676165577414 107.82 0.1489 111.35 111.29 111.44 3.5382 49 16 4 0 0 0 0.30034 2 26324 26324;26329 13.906 5.3128 1 39318000 + 24704 23939 15331 15340 28939;28940 28939 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 505.3171081542969 2 505.3169 1008.61925 0.20884 0.00010553 0.22312 0.00011274 0.43196 0.00021828 505.31694156109546 107.81 0.43877 111.44 111.35 111.79 3.6313 89 38 5 0 0 0 0.21527 1 25999 25999 19.257 10.664 1 73280000 + 24705 23939 15331 15340 28941 28941 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 505.3160400390625 2 505.3169 1008.61925 0.30537 0.00015431 -0.041128 -2.0783E-05 0.26424 0.00013352 505.3167696723512 107.78 0.16789 111.45 111.39 111.56 3.6783 45 15 4 0 0 0 0.21527 2 25488 25488;25490 19.257 7.6167 1 64947000 + 24706 23939 15331 15340 28942;28943 28942 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 505.81878662109375 2 505.3169 1008.61925 0.26915 0.00013601 -0.49341 -0.00024933 -0.22426 -0.00011332 505.31655083467007 107.8 0.18077 111.48 111.41 111.59 3.6813 43 16 4 0 0 0 0.21527 2 25432 25432;25436 19.257 10.664 1 67197000 + 24707 23939 15331 15340 28944;28945 28944 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 505.81878662109375 2 505.3169 1008.61925 0.26915 0.00013601 -0.49341 -0.00024933 -0.22426 -0.00011332 505.31655083467007 107.8 0.18077 111.48 111.41 111.59 3.6813 43 16 4 0 0 0 0.099407 1 25432 25432 19.257 11.347 1 67197000 + 24708 23939 15331 15340 28946 28946 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 505.3169 1008.61925 0.32903 0.00016627 0.34574 0.00017471 0.67477 0.00034097 505.3169973463203 107.81 0.21249 111.48 111.43 111.64 3.6724 0.011054 0.00030604 NaN 19.257 34 13 4 NaN NaN NaN NaN 0 NaN NaN 0 55439000 + 24709 23939 15331 15340 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 505.3169 1008.61925 0.31027 0.00015678 0.025738 1.3006E-05 0.33601 0.00016979 505.31676165577414 107.82 0.1489 111.35 111.29 111.44 3.5382 -0.11472 -1.7358E-05 NaN 19.257 49 16 4 NaN NaN NaN NaN 0 NaN NaN 0 39318000 + 24710 23939 15331 15340 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 505.3169 1008.61925 0.30537 0.00015431 -0.041128 -2.0783E-05 0.26424 0.00013352 505.3167696723512 107.78 0.16789 111.45 111.39 111.56 3.6783 -0.014133 -8.4935E-05 NaN 19.257 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 64947000 + 24711 23939 15331 15340 0.11528264045261949 LPATPKARR 9 Unmodified _LPATPKARR_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|31|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 505.3169 1008.61925 0.26886 0.00013586 -1.3193 -0.00066666 -1.0504 -0.0005308 505.3153855330437 108.03 0.080879 111.72 111.67 111.75 3.6813 0.24661 -0.0013767 NaN 19.257 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 622930 + 24712 23939 15331 15340 0.11528264045261949 LPATRLFRAL 10 Unmodified _LPATRLFRAL_ 0 0 0 ENST00000556298.1_1_14:77276562-77279203:-|nuORF;ENSG00000013523|ENST00000251089|ANGEL1 ENST00000556298.1_1_14:77276562-77279203:-|nuORF ENST00000556298.1_1_14:77276562-77279203:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 579.36181640625 2 579.361308 1156.70806 0.47911 0.00027758 0.34166 0.00019794 0.82077 0.00047552 579.3613798823496 108.73 0.68481 112.41 112.2 112.88 3.6746 178 73 3 0 0 0 0.47413 2 25878 25878;25924 13.906 3.8321 1 43747000 24713 790 15332 15341 28947;28948 28947 0.13597679284930564 LPATRLFRAL 10 Unmodified _LPATRLFRAL_ 0 0 0 ENST00000556298.1_1_14:77276562-77279203:-|nuORF;ENSG00000013523|ENST00000251089|ANGEL1 ENST00000556298.1_1_14:77276562-77279203:-|nuORF ENST00000556298.1_1_14:77276562-77279203:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 579.3614501953125 2 579.361308 1156.70806 0.4856 0.00028134 0.47255 0.00027378 0.95815 0.00055512 579.3615158561119 109.04 0.21586 112.72 112.61 112.82 3.6751 50 24 3 0 0 0 0.52083 1 25863 25863 9.3831 9.3831 1 9931600 24714 790 15332 15341 28949 28949 0.13597679284930564 LPCALLVFV 9 Unmodified _LPCALLVFV_ 0 0 0 REV__nc|ENSG00000132768|Q9BQC3-3|DPH2 REV__nc|ENSG00000132768|Q9BQC3-3|DPH2 MULTI-MSMS UPN48_class_I_Rep_2 6 487.7908020019531 2 487.790807 973.56706 0.25506 0.00012441 -0.036802 -1.7952E-05 0.21826 0.00010646 487.79066720683704 87.607 0.64142 91.335 91.06 91.701 3.7279 129 74 2 0 0 0 0.48414 1 20893 20893 2.3027 2.3027 1 425100 + 24715 19032 15333 15342 28950 28950 0.0792196458729677 LPCHCCWCEY 10 Unmodified _LPCHCCWCEY_ 0 0 0 L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|52|2|sense L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|52|2|sense L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|52|2|sense MSMS UPN47_class_I_Rep_3 4 628.7212524414062 2 628.721415 1255.42828 NaN NaN NaN NaN NaN NaN NaN 18.515 1 21.869 21.369 22.369 3.3545 0 0 0 0.53105 1 1555 1555 0.45834 0 1 24716 15463 15334 15343 28951 28951 -0.18922012706480018 LPCIVMLR 8 Unmodified _LPCIVMLR_ 0 0 0 REV__MER67C_dup1370|chr17:21129737-21130029:-|1.0815508181114488|0.0305866979228096|5.14|151.0|15|1|anti-sense REV__MER67C_dup1370|chr17:21129737-21130029:-|1.0815508181114488|0.0305866979228096|5.14|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.7732849121094 2 472.774634 943.534715 -0.33672 -0.00015919 -1.1804 -0.00055808 -1.5171 -0.00071727 472.77381565365005 30.062 0.4794 33.807 33.531 34.01 3.7449 49 33 2 0 0 0 0.82752 1 4810 4810 5.2307 2.6532 1 90769 + 24717 31535 15335 15344 28952 28952 0.06068853912643135 LPCIVMLR 8 Unmodified _LPCIVMLR_ 0 0 0 REV__MER67C_dup1370|chr17:21129737-21130029:-|1.0815508181114488|0.0305866979228096|5.14|151.0|15|1|anti-sense REV__MER67C_dup1370|chr17:21129737-21130029:-|1.0815508181114488|0.0305866979228096|5.14|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.7742919921875 2 472.774634 943.534715 -0.30539 -0.00014438 -1.1081 -0.00052389 -1.4135 -0.00066827 472.7739465225473 30.116 0.43063 33.598 33.377 33.807 3.4821 60 36 2 0 0 0 0.82752 1 4931 4931 9.3474 9.3474 1 57339 + 24718 31535 15335 15344 28953 28953 0.06068853912643135 LPCIVMLR 8 Unmodified _LPCIVMLR_ 0 0 0 REV__MER67C_dup1370|chr17:21129737-21130029:-|1.0815508181114488|0.0305866979228096|5.14|151.0|15|1|anti-sense REV__MER67C_dup1370|chr17:21129737-21130029:-|1.0815508181114488|0.0305866979228096|5.14|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.7737731933594 2 472.774634 943.534715 -0.61875 -0.00029253 -0.78676 -0.00037196 -1.4055 -0.00066449 472.77407084917036 30.371 0.54165 33.682 33.436 33.977 3.3116 74 43 2 0 0 0 0.82752 1 5045 5045 9.3474 9.3474 1 64949 + 24719 31535 15335 15344 28954 28954 0.06068853912643135 LPCKKYEYP 9 Unmodified _LPCKKYEYP_ 0 0 0 MLT1H1_dup996|chr4:140100700-140101255:+|1.0854362849122274|0.0103548800983722|6.71|151.0|16|3|sense MLT1H1_dup996|chr4:140100700-140101255:+|1.0854362849122274|0.0103548800983722|6.71|151.0|16|3|sense MLT1H1_dup996|chr4:140100700-140101255:+|1.0854362849122274|0.0103548800983722|6.71|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 570.6983642578125 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 116.18 1 119.8 119.3 120.3 3.6254 0 0 0 0.39428 1 28280 28280 2.0598 0.21551 1 24720 16444 15336 15345 28955 28955 0.004315538854143597 LPCRFHRLIL 10 Unmodified _LPCRFHRLIL_ 0 0 0 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 MULTI-MSMS UPN48_class_I_Rep_1 5 634.3778076171875 2 634.376435 1266.73832 0.43213 0.00027413 0.86915 0.00055137 1.3013 0.0008255 634.3775464526815 103.76 0.59381 107.38 107.34 107.93 3.6209 169 96 3 0 0 0 0.56309 1 25106 25106 1.6526 1.6526 1 102230000 24721 5498 15337 15346 28956 28956 0.11561714678487078 LPCRFHRLIL 10 Unmodified _LPCRFHRLIL_ 0 0 0 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 MULTI-MSMS UPN48_class_I_Rep_3 7 634.3777465820312 2 634.376435 1266.73832 0.61984 0.00039321 0.78789 0.00049982 1.4077 0.00089303 634.3771673175027 104.25 0.32538 107.97 107.87 108.19 3.7192 158 48 4 0 0 0 0.56309 1 24650 24650 1.6526 1.6526 1 103790000 24722 5498 15337 15346 28957 28957 0.11561714678487078 LPCRFHRLIL 10 Unmodified _LPCRFHRLIL_ 0 0 0 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 MULTI-MSMS UPN48_class_I_Rep_3 7 634.3776245117188 2 634.376435 1266.73832 0.61998 0.0003933 0.86324 0.00054762 1.4832 0.00094092 634.3772565889302 104.69 0.44923 108.41 108.36 108.81 3.7192 117 65 4 0 0 0 0.56309 1 24737 24737 1.6526 1.6526 1 18823000 24723 5498 15337 15346 28958 28958 0.11561714678487078 LPCRFHRLIL 10 Unmodified _LPCRFHRLIL_ 0 0 0 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 634.376435 1266.73832 0.49743 0.00031555 1.3025 0.00082628 1.7999 0.0011418 634.3773815961182 104.7 0.72418 108.39 108.37 109.09 3.6901 -0.0098809 0.00010585 NaN 1.6526 256 109 4 NaN NaN NaN NaN 0 NaN NaN 0 24423000 24724 5498 15337 15346 0.11561714678487078 LPCRFHRLIL 10 Unmodified _LPCRFHRLIL_ 0 0 0 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 ENSG00000203972|ENST00000371197|GLYATL3 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 634.376435 1266.73832 0.61998 0.0003933 0.86324 0.00054762 1.4832 0.00094092 634.3772565889302 104.69 0.44923 108.41 108.36 108.81 3.7192 0.0098809 -0.00045147 NaN 1.6526 117 65 4 NaN NaN NaN NaN 0 NaN NaN 0 18823000 24725 5498 15337 15346 0.11561714678487078 LPCVPPLSHF 10 Unmodified _LPCVPPLSHF_ 0 0 0 L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|58|3|sense L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|58|3|sense L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|58|3|sense MSMS UPN48_class_I_Rep_2 6 555.7718505859375 2 555.294245 1108.57394 NaN NaN NaN NaN NaN NaN NaN 74.823 1 78.413 77.913 78.913 3.59 0 0 0 0.53105 1 17624 17624 1.8442 0.19162 1 24726 13349 15338 15347 28959 28959 0.023992774678617934 LPDLHYKKT 9 Unmodified _LPDLHYKKT_ 0 0 0 L1M4a1_dup280|chr2:26376647-26377349:-|1.266177933627302|0.0704735388451509|4.17|151.0|24|3|sense L1M4a1_dup280|chr2:26376647-26377349:-|1.266177933627302|0.0704735388451509|4.17|151.0|24|3|sense L1M4a1_dup280|chr2:26376647-26377349:-|1.266177933627302|0.0704735388451509|4.17|151.0|24|3|sense MSMS UPN48_class_I_Rep_1 5 557.8148803710938 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 99.026 1 102.63 102.13 103.13 3.6065 0 0 0 0.39598 1 23905 23905 1.6526 0.17072 1 24727 8952 15339 15348 28960 28960 0.06598004885699993 LPDRRHLR 8 Unmodified _LPDRRHLR_ 0 0 0 REV__ENST00000497563.5_1_7:23385645-23387369:-|nuORF REV__ENST00000497563.5_1_7:23385645-23387369:-|nuORF MSMS UPN46_class_I_Rep_3 1 531.8175048828125 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 95.315 1 95.315 94.815 95.815 0 0 0 0 0.40746 1 23136 23136 0.69038 0 1 + 24728 22670 15340 15349 28961 28961 0.09229898134026371 LPEESRLLS 9 Unmodified _LPEESRLLS_ 0 0 0 nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL nc|ENSG00000005844|P20701-3|ITGAL nc|ENSG00000005844|P20701-3|ITGAL MULTI-SECPEP UPN47_class_I_Rep_3 4 521.7713012695312 2 522.290214 1042.56587 0.39201 0.00020474 -0.70527 -0.00036836 -0.31327 -0.00016362 522.2898140516629 50.583 0.68654 53.8 53.307 53.994 3.2163 63 38 2 0 0 0 0.12086 1 11146 11146 7.609 0 1 104040 24729 705 15341 15350 28962 28962 0.046294217521108294 LPEEYILSILG 11 Unmodified _LPEEYILSILG_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense MSMS UPN47_class_I_Rep_1 2 416.56927490234375 3 416.235828 1245.68566 NaN NaN NaN NaN NaN NaN NaN 104.6 1 108.36 107.86 108.86 3.7627 0 0 0 0.34415 1 25689 25689 4.7159 1.3963 1 + 24730 27173 15342 15351 28963 28963 0.07263990306023516 LPEEYILSILG 11 Unmodified _LPEEYILSILG_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense MSMS UPN47_class_I_Rep_1 2 416.23480224609375 3 416.235828 1245.68566 NaN NaN NaN NaN NaN NaN NaN 104.74 1 108.48 107.98 108.98 3.7395 0 0 0 0.38417 1 25721 25721 2.6312 0.54727 1 + 24731 27173 15342 15351 28964 28964 0.07263990306023516 LPEEYILSILG 11 Unmodified _LPEEYILSILG_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense MSMS UPN47_class_I_Rep_3 4 416.2353515625 3 416.235828 1245.68566 NaN NaN NaN NaN NaN NaN NaN 104.76 1 108.29 107.79 108.79 3.5308 0 0 0 0.34415 1 25671 25671 4.7159 1.1232 1 + 24732 27173 15342 15351 28965 28965 0.07263990306023516 LPEEYILSILG 11 Unmodified _LPEEYILSILG_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|38|2|sense MSMS UPN48_class_I_Rep_1 5 416.2343444824219 3 416.235828 1245.68566 NaN NaN NaN NaN NaN NaN NaN 103.54 1 107.16 106.66 107.66 3.6209 0 0 0 0.34415 1 24963 24963 4.7159 1.1232 1 + 24733 27173 15342 15351 28966 28966 0.07263990306023516 LPERYRRF 8 Unmodified _LPERYRRF_ 0 0 0 REV__L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|108|3|sense REV__L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|108|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.81982421875 2 568.819807 1135.62506 -0.12731 -7.2419E-05 -1.1799 -0.00067114 -1.3072 -0.00074356 568.8190324398289 16 0.23776 19.497 19.412 19.65 3.4968 48 28 2 0 0 0 0.82752 1 941 941 0.69038 0 1 29734 + 24734 30687 15343 15352 28967 28967 0.06267362556923217 LPEVDRHP 8 Unmodified _LPEVDRHP_ 0 0 0 ENST00000449363.1_1_17:13937714-13972716:-|nuORF;ENST00000602743.1_1_17:13801940-13972716:-|nuORF ENST00000449363.1_1_17:13937714-13972716:-|nuORF ENST00000449363.1_1_17:13937714-13972716:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 481.756591796875 2 481.756341 961.498129 0.099653 4.8008E-05 0.026483 1.2758E-05 0.12614 6.0767E-05 481.7562832910331 51.653 0.69871 55.263 55.003 55.702 3.6105 116 72 2 0 0 0 0.82752 1 10619 10619 8.5933 0 1 627910 24735 6806 15344 15353 28968 28968 0.015840166119460264 LPEVDVELPT 10 Unmodified _LPEVDVELPT_ 0 0 0 ENSG00000159110|ENST00000342136|IFNAR2 ENSG00000159110|ENST00000342136|IFNAR2 ENSG00000159110|ENST00000342136|IFNAR2 MSMS UPN48_class_I_Rep_3 7 556.298583984375 2 556.297704 1110.58086 NaN NaN NaN NaN NaN NaN NaN 34.735 1 38.407 37.907 38.907 3.6721 0 0 0 0.53105 1 5549 5549 1.4819 0.68827 1 24736 3823 15345 15354 28969 28969 0.02998868829422463 LPFAIHYLK 9 Unmodified _LPFAIHYLK_ 0 0 0 REV__L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|57|2|anti-sense REV__L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_3 4 551.3240356445312 2 551.326402 1100.63825 NaN NaN NaN NaN NaN NaN NaN 62.66 1 65.83 65.33 66.33 3.1698 0 0 0 0.38639 1 14871 14871 3.9444 1.4459 1 + 24737 26368 15346 15355 28970 28970 0.09195800616294036 LPFAIHYLK 9 Unmodified _LPFAIHYLK_ 0 0 0 REV__L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|57|2|anti-sense REV__L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_3 4 551.3255004882812 2 551.326402 1100.63825 NaN NaN NaN NaN NaN NaN NaN 63.313 1 66.482 65.982 66.982 3.1698 0 0 0 0.38478 1 15070 15070 4.3292 0.73274 1 + 24738 26368 15346 15355 28971 28971 0.09195800616294036 LPFDHFWD 8 Unmodified _LPFDHFWD_ 0 0 0 REV__L1PB1_dup1848|chr2:230754820-230755703:-|1.8023009849752576|0.0290791262923109|5.95|151.0|33|1|anti-sense REV__L1PB1_dup1848|chr2:230754820-230755703:-|1.8023009849752576|0.0290791262923109|5.95|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 538.7454223632812 2 538.745442 1075.47633 NaN NaN NaN NaN NaN NaN NaN 33.786 1 37.306 36.806 37.806 3.5201 0 0 0 0.40746 1 5318 5318 0.69038 0 1 + 24739 30363 15347 15356 28972 28972 -0.058387881366115835 LPFFLHVL 8 Unmodified _LPFFLHVL_ 0 0 0 L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|67|2|anti-sense L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|67|2|anti-sense L1MC4_dup20665|chr15:101005450-101006875:+|1.2733417137739431|0.0340964979923059|5.22|150.0|67|2|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2951354980469 2 493.297114 984.579674 NaN NaN NaN NaN NaN NaN NaN 60.868 1 64.033 63.533 64.533 3.1651 0 0 0 0.4032 1 14321 14321 6.3541 0 1 24740 11450 15348 15357 28973 28973 0.08676744041838447 LPFHRLPF 8 Unmodified _LPFHRLPF_ 0 0 0 L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense;L1MB2_dup5060|chrX:155113147-155114592:+|1.2476832223946344|0.2415111186234005|2.37|151.0|92|3|anti-sense;L1MB1_dup4349|chr12:3785305-3786341:-|1.0649315729304478|0.0869992544088719|3.61|151.0|66|3|anti-sense;L1MB2_dup2833|chr6:35627442-35627749:-|1.0006118407869131|0.0488302292318289|4.36|150.0|13|1|anti-sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.8069458007812 2 513.797812 1025.58107 0.32708 0.00016805 -1.2861 -0.00066078 -0.959 -0.00049273 514.2984912877748 90.19 0.05323 93.587 93.554 93.607 3.3976 9 6 2 0 0 0 0.82752 1 22609 22609 0.79363 0 1 30681 24741 10185 15349 15358 28974 28974 0.06930378130596182 LPFHRLPF 8 Unmodified _LPFHRLPF_ 0 0 0 L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense;L1MB2_dup5060|chrX:155113147-155114592:+|1.2476832223946344|0.2415111186234005|2.37|151.0|92|3|anti-sense;L1MB1_dup4349|chr12:3785305-3786341:-|1.0649315729304478|0.0869992544088719|3.61|151.0|66|3|anti-sense;L1MB2_dup2833|chr6:35627442-35627749:-|1.0006118407869131|0.0488302292318289|4.36|150.0|13|1|anti-sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense MSMS UPN48_class_I_Rep_2 6 513.7974853515625 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 77.071 1 80.683 80.183 81.183 3.6116 0 0 0 0.40738 1 18224 18224 0.79363 0 1 24742 10185 15349 15358 28975 28975 0.06930378130596182 LPFHRLPF 8 Unmodified _LPFHRLPF_ 0 0 0 L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense;L1MB2_dup5060|chrX:155113147-155114592:+|1.2476832223946344|0.2415111186234005|2.37|151.0|92|3|anti-sense;L1MB1_dup4349|chr12:3785305-3786341:-|1.0649315729304478|0.0869992544088719|3.61|151.0|66|3|anti-sense;L1MB2_dup2833|chr6:35627442-35627749:-|1.0006118407869131|0.0488302292318289|4.36|150.0|13|1|anti-sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense L1MB2_dup342|chr1:145797384-145799067:-|3.131331773016805|0.0572610963039843|5.77|151.0|100|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 513.797812 1025.58107 0.34951 0.00017958 -0.54701 -0.00028105 -0.1975 -0.00010147 513.7979678953337 90.011 0.039932 93.701 93.671 93.711 3.6899 0.056698 0.00042164 NaN 0.79363 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 19328 24743 10185 15349 15358 0.06930378130596182 LPFKKLTV 8 Unmodified _LPFKKLTV_ 0 0 0 REV__nc|ENSG00000102755|P17948-4|FLT1 REV__nc|ENSG00000102755|P17948-4|FLT1 MULTI-MSMS UPN47_class_I_Rep_1 2 473.30975341796875 2 473.310221 944.605889 -0.18801 -8.8988E-05 -0.065157 -3.0839E-05 -0.25317 -0.00011983 473.31006296475584 44.493 0.71447 48.188 47.932 48.647 3.6951 67 49 2 0 0 0 0.82752 3 9236 9236;9273;9314 20.454 0 1 111050 + 24744 18201 15350 15359 28976;28977;28978 28976 0.13137013213304272 LPFKKLTV 8 Unmodified _LPFKKLTV_ 0 0 0 REV__nc|ENSG00000102755|P17948-4|FLT1 REV__nc|ENSG00000102755|P17948-4|FLT1 MULTI-MSMS UPN47_class_I_Rep_2 3 473.3091125488281 2 473.310221 944.605889 -0.13486 -6.383E-05 -0.15923 -7.5367E-05 -0.29409 -0.0001392 473.31000903989184 45.025 0.69177 48.381 48.09 48.782 3.3555 53 40 2 0 0 0 0.82752 1 9489 9489 10.074 0 1 54065 + 24745 18201 15350 15359 28979 28979 0.13137013213304272 LPFKKLTV 8 Unmodified _LPFKKLTV_ 0 0 0 REV__nc|ENSG00000102755|P17948-4|FLT1 REV__nc|ENSG00000102755|P17948-4|FLT1 MULTI-MSMS UPN47_class_I_Rep_3 4 473.3097839355469 2 473.310221 944.605889 -0.19316 -9.1425E-05 -0.099609 -4.7146E-05 -0.29277 -0.00013857 473.3101290605693 45.332 0.46806 48.576 48.435 48.903 3.2441 43 29 2 0 0 0 0.82752 1 9580 9580 3.5965 0 1 91515 + 24746 18201 15350 15359 28980 28980 0.13137013213304272 LPFLNLLTT 9 Unmodified _LPFLNLLTT_ 0 0 0 ENST00000554152.5_1_14:53339627-53341999:-|nuORF ENST00000554152.5_1_14:53339627-53341999:-|nuORF ENST00000554152.5_1_14:53339627-53341999:-|nuORF MSMS UPN48_class_I_Rep_3 7 516.313232421875 2 516.310418 1030.60628 NaN NaN NaN NaN NaN NaN NaN 96.838 1 100.75 100.25 101.25 3.9084 0 0 0 0.39428 1 22955 22955 2.0598 0 1 24747 7419 15351 15360 28981 28981 0.09220388142512093 LPFMFFFLL 9 Unmodified _LPFMFFFLL_ 0 0 0 L1MEf_dup8476|chr12:57346479-57346963:+|1.1272054516243564|0.0048066554865464|7.87|151.0|31|2|anti-sense L1MEf_dup8476|chr12:57346479-57346963:+|1.1272054516243564|0.0048066554865464|7.87|151.0|31|2|anti-sense L1MEf_dup8476|chr12:57346479-57346963:+|1.1272054516243564|0.0048066554865464|7.87|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 587.8215942382812 2 587.822107 1173.62966 NaN NaN NaN NaN NaN NaN NaN 62.107 1 65.575 65.075 66.075 3.4678 0 0 0 0.381 1 13875 13875 5.2307 0 1 24748 13327 15352 15361 28982 28982 0.04979110655494878 LPFNKSKQ 8 Unmodified _LPFNKSKQ_ 0 0 0 REV__ENSG00000243244|ENST00000404752|STON1 REV__ENSG00000243244|ENST00000404752|STON1 MULTI-MSMS UPN47_class_I_Rep_1 2 481.2767333984375 2 481.276909 960.539266 -0.2422 -0.00011657 -0.046916 -2.258E-05 -0.28912 -0.00013915 481.27680006632 41.952 0.59096 45.631 45.392 45.983 3.6792 75 40 3 0 0 0 0.82752 1 8483 8483 6.7232 0 1 86334 + 24749 17781 15353 15362 28983 28983 0.05741777651417124 LPFVKKDD 8 Unmodified _LPFVKKDD_ 0 0 0 REV__ENSG00000164715|ENST00000297293|LMTK2 REV__ENSG00000164715|ENST00000297293|LMTK2 MSMS UPN47_class_I_Rep_3 4 481.2713623046875 2 481.271293 960.528032 NaN NaN NaN NaN NaN NaN NaN 45.72 1 48.964 48.464 49.464 3.2441 0 0 0 0.40527 1 9714 9714 3.5965 0 1 + 24750 20078 15354 15363 28984 28984 0.04618955557270965 LPFVPLPDRR 10 Unmodified _LPFVPLPDRR_ 0 0 0 HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|167|1|anti-sense HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|167|1|anti-sense HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|167|1|anti-sense MSMS UPN46_class_I_Rep_3 1 605.3585205078125 2 605.358765 1208.70298 NaN NaN NaN NaN NaN NaN NaN 50.546 1 50.546 50.046 51.046 0 0 0 0 0.53105 1 10686 10686 3.5965 0 1 24751 8391 15355 15364 28985 28985 0.10697375422296318 LPFWDWKN 8 Unmodified _LPFWDWKN_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|56|1|anti-sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|56|1|anti-sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_1 5 553.2771606445312 2 553.276909 1104.53927 NaN NaN NaN NaN NaN NaN NaN 112.79 1 116.42 115.92 116.92 3.6321 0 0 0 0.40625 1 27381 27381 2.3027 0.24298 1 24752 16553 15356 15365 28986 28986 -0.008822223485822178 LPGAIPSFRIP 11 Unmodified _LPGAIPSFRIP_ 0 0 0 ENST00000546970.5_1_12:54769658-54778785:-|nuORF ENST00000546970.5_1_12:54769658-54778785:-|nuORF ENST00000546970.5_1_12:54769658-54778785:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 584.349609375 2 584.347866 1166.68118 0.34349 0.00020072 1.5589 0.00091096 1.9024 0.0011117 584.3495842946 33.551 0.027096 33.551 33.537 33.564 0 4 2 2 0 0 0 0.56119 1 5884 5884 6.2058 1.8765 1 136760 24753 7381 15357 15366 28987 28987 0.10450570673765469 LPGDMVLLEK 10 Unmodified _LPGDMVLLEK_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MSMS UPN48_class_I_Rep_2 6 557.8133544921875 2 557.812467 1113.61038 NaN NaN NaN NaN NaN NaN NaN 89.844 1 93.591 93.091 94.091 3.7471 0 0 0 0.53105 1 21416 21416 2.9952 1.151 1 24754 928 15358 15367 28988 28988 0.05812109573935231 LPGHDLPLRL 10 Unmodified _LPGHDLPLRL_ 0 0 0 REV__LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|37|1|anti-sense REV__LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 565.8374633789062 2 565.837665 1129.66078 0.48166 0.00027254 -0.41119 -0.00023267 0.070468 3.9873E-05 565.8372711523797 55.332 0.97142 58.84 58.41 59.381 3.5082 131 60 3 0 0 0 0.44401 1 11897 11897 16.149 5.9985 1 353050 + 24755 30839 15359 15368 28989 28989 0.1011340001393819 LPGHDLPLRL 10 Unmodified _LPGHDLPLRL_ 0 0 0 REV__LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|37|1|anti-sense REV__LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|37|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 565.837646484375 2 565.837665 1129.66078 0.61251 0.00034658 -0.616 -0.00034855 -0.0034865 -1.9728E-06 565.8372236035963 55.497 0.43422 59.053 58.989 59.424 3.5559 50 27 3 0 0 0 0.84575 1 11855 11855 12.241 4.9514 1 291730 + 24756 30839 15359 15368 28990 28990 0.1011340001393819 LPGHDLPLRL 10 Unmodified _LPGHDLPLRL_ 0 0 0 REV__LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|37|1|anti-sense REV__LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|37|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 565.837665 1129.66078 0.32959 0.00018649 -1.1407 -0.00064543 -0.81107 -0.00045893 565.8371077662447 55.737 0.077896 59.292 59.233 59.311 3.5554 0.11949 -0.0005202 NaN 12.241 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 120100 + 24757 30839 15359 15368 0.1011340001393819 LPGHNGQS 8 Unmodified _LPGHNGQS_ 0 0 0 REV__LTR53_dup458|chr19:57854457-57854733:+|1.6399429793955862|0.3775245794725506|2.12|151.0|7|2|sense REV__LTR53_dup458|chr19:57854457-57854733:+|1.6399429793955862|0.3775245794725506|2.12|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 405.19775390625 2 405.198659 808.382765 NaN NaN NaN NaN NaN NaN NaN 20.377 1 23.727 23.227 24.227 3.3496 0 0 0 0.40738 1 2091 2091 0.79363 0 1 + 24758 30967 15360 15369 28991 28991 -0.02909087519037712 LPGKKMLIL 9 Unmodified _LPGKKMLIL_ 0 0 0 HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|10|1|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|10|1|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 506.8349914550781 2 506.833006 1011.65146 NaN NaN NaN NaN NaN NaN NaN 53.79 1 57.387 56.887 57.887 3.5962 0 0 0 0.38299 1 11307 11307 4.756 0.42677 1 24759 8377 15361 15370 28992 28992 0.14609915404071216 LPGPAYFAA 9 Unmodified _LPGPAYFAA_ 0 0 0 REV__ENSG00000129152|ENST00000250003|MYOD1 REV__ENSG00000129152|ENST00000250003|MYOD1 MULTI-MSMS UPN48_class_I_Rep_1 5 453.7397155761719 2 453.739628 905.464704 0.018533 8.4092E-06 0.43618 0.00019791 0.45471 0.00020632 453.73977382234136 104.7 0.22156 108.32 108.13 108.35 3.6247 48 30 2 0 0 0 0.44858 1 25190 25190 5.2307 2.3415 1 3952700 + 24760 18918 15362 15371 28993 28993 0.008190148400444741 LPGPAYFAA 9 Unmodified _LPGPAYFAA_ 0 0 0 REV__ENSG00000129152|ENST00000250003|MYOD1 REV__ENSG00000129152|ENST00000250003|MYOD1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 453.739628 905.464704 0.17228 7.817E-05 0.27149 0.00012319 0.44377 0.00020136 453.7397408386472 104.91 0.26205 108.63 108.59 108.85 3.7192 0.23985 3.2252E-05 NaN 5.2307 60 38 2 NaN NaN NaN NaN 0 NaN NaN 0 1806400 + 24761 18918 15362 15371 0.008190148400444741 LPGQPPLRGS 10 Unmodified _LPGQPPLRGS_ 0 0 0 REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 511.2921142578125 2 511.293091 1020.57163 -0.27168 -0.00013891 -1.0894 -0.00055702 -1.3611 -0.00069593 511.29244125461645 35.296 0.69312 38.721 38.47 39.163 3.4253 63 44 2 0 0 0 0.56333 1 6530 6530 1.4819 0.28856 1 109880 + 24762 23212 15363 15372 28994 28994 0.06216565054421608 LPGQPPLRGS 10 Unmodified _LPGQPPLRGS_ 0 0 0 REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 511.293091 1020.57163 -0.18654 -9.5377E-05 -1.2235 -0.00062558 -1.4101 -0.00072096 511.2922792884179 35.034 0.71104 38.72 38.415 39.126 3.6859 -0.012929 -2.9694E-05 NaN 1.4819 80 52 2 NaN NaN NaN NaN 0 NaN NaN 0 120870 + 24763 23212 15363 15372 0.06216565054421608 LPGQPPLRGS 10 Unmodified _LPGQPPLRGS_ 0 0 0 REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 511.293091 1020.57163 -0.27168 -0.00013891 -1.0894 -0.00055702 -1.3611 -0.00069593 511.29244125461645 35.296 0.69312 38.721 38.47 39.163 3.4253 -0.011599 0.00010744 NaN 1.4819 63 44 2 NaN NaN NaN NaN 0 NaN NaN 0 109880 + 24764 23212 15363 15372 0.06216565054421608 LPGQPPLRGS 10 Unmodified _LPGQPPLRGS_ 0 0 0 REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 511.293091 1020.57163 -0.27836 -0.00014232 -1.2338 -0.00063083 -1.5121 -0.00077315 511.29243746697773 35.502 0.60175 38.757 38.504 39.105 3.2547 0.024528 -4.0184E-05 NaN 1.4819 80 39 3 NaN NaN NaN NaN 0 NaN NaN 0 119740 + 24765 23212 15363 15372 0.06216565054421608 LPGRGGPR 8 Unmodified _LPGRGGPR_ 0 0 0 ENST00000454486.4_1_15:32828592-32828919:-|nuORF ENST00000454486.4_1_15:32828592-32828919:-|nuORF ENST00000454486.4_1_15:32828592-32828919:-|nuORF MSMS UPN48_class_I_Rep_2 6 405.5744323730469 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 91.128 1 94.883 94.383 95.383 3.7554 0 0 0 0.40404 1 21696 21696 5.2307 2.6532 1 24766 6827 15364 15373 28995 28995 0.05487488368510185 LPHFLIGF 8 Unmodified _LPHFLIGF_ 0 0 0 L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|49|1|anti-sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|49|1|anti-sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|49|1|anti-sense MSMS UPN48_class_I_Rep_2 6 472.2743225097656 2 472.273638 942.532724 NaN NaN NaN NaN NaN NaN NaN 55.645 1 59.201 58.701 59.701 3.5559 0 0 0 0.4032 1 11879 11879 6.3541 0 1 24767 11928 15365 15374 28996 28996 0.0591588449073015 LPHFLIGF 8 Unmodified _LPHFLIGF_ 0 0 0 L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|49|1|anti-sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|49|1|anti-sense L1MD1_dup2039|chr5:69270452-69271503:-|1.7481156886180815|0.2680679828581321|2.71|151.0|49|1|anti-sense MSMS UPN48_class_I_Rep_3 7 472.27435302734375 2 472.273638 942.532724 NaN NaN NaN NaN NaN NaN NaN 55.336 1 58.891 58.391 59.391 3.5554 0 0 0 0.4032 1 11720 11720 6.3541 0 1 24768 11928 15365 15374 28997 28997 0.0591588449073015 LPHHHPFC 8 Unmodified _LPHHHPFC_ 0 0 0 REV__nc|ENSG00000275410|P35680-4|HNF1B REV__nc|ENSG00000275410|P35680-4|HNF1B MSMS UPN48_class_I_Rep_3 7 494.2337341308594 2 494.234522 986.45449 NaN NaN NaN NaN NaN NaN NaN 116.42 1 120.05 119.55 120.55 3.6312 0 0 0 0.40738 1 27706 27706 0.79363 0 1 + 24769 32123 15366 15375 28998 28998 -0.039278713661815345 LPHHPIQQ 8 Unmodified _LPHHPIQQ_ 0 0 0 L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|66|2|anti-sense L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|66|2|anti-sense L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|66|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2679138183594 2 485.266876 968.519199 NaN NaN NaN NaN NaN NaN NaN 25.577 1 29.346 28.846 29.846 3.769 0 0 0 0.40738 1 3131 3131 0.79363 0 1 24770 11686 15367 15376 28999 28999 0.0336802671146188 LPHKFDTL 8 Unmodified _LPHKFDTL_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS UPN48_class_I_Rep_3 7 485.77178955078125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 22.221 1 25.935 25.435 26.435 3.7144 0 0 0 0.40746 1 2233 2233 0.69038 0 1 24771 1264 15368 15377 29000 29000 0.042383752771456784 LPHLGSLML 9 Unmodified _LPHLGSLML_ 0 0 0 REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|134|1|anti-sense REV__L1P1_dup1880|chrX:57087584-57091137:-|1.8786757527072608|0.3924605998067604|2.26|151.0|134|1|anti-sense MSMS UPN47_class_I_Rep_1 2 490.78338623046875 2 490.783513 979.552473 NaN NaN NaN NaN NaN NaN NaN 54.671 1 58.172 57.672 58.672 3.5014 0 0 0 0.38478 1 12350 12350 4.3292 0 1 + 24772 28825 15369 15378 29001 29001 0.06187892439152165 LPHNLEIP 8 Unmodified _LPHNLEIP_ 0 0 0 L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|20|3|sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|20|3|sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|20|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 467.10186767578125 2 466.763635 931.512717 0.092587 4.3216E-05 -0.34405 -0.00016059 -0.25147 -0.00011737 466.7634279694647 51.684 0.6524 55.017 54.699 55.351 3.3332 39 31 2 0 0 0 0.72333 1 11484 11484 10.824 1.4408 1 45669 24773 10276 15370 15379 29002 29002 0.04422088760088627 LPHNLEIP 8 Unmodified _LPHNLEIP_ 0 0 0 L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|20|3|sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|20|3|sense L1MB2_dup7345|chr16:71912600-71913484:-|2.5791149323036624|0.0302247162717717|6.42|151.0|20|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 466.763635 931.512717 0.024535 1.1452E-05 -0.22127 -0.00010328 -0.19674 -9.1829E-05 466.7634696915611 51.883 0.34432 55.088 54.911 55.256 3.2055 0.035481 8.521E-05 NaN 10.824 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 49788 24774 10276 15370 15379 0.04422088760088627 LPHNRLVSL 9 Unmodified _LPHNRLVSL_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS UPN47_class_I_Rep_3 4 524.8165283203125 2 524.816733 1047.61891 NaN NaN NaN NaN NaN NaN NaN 41.679 1 44.916 44.416 45.416 3.2372 0 0 0 0.38916 1 8477 8477 3.2813 0 1 24775 4000 15371 15380 29003 29003 0.09700844325402613 LPHPLLPNPLT 11 Unmodified _LPHPLLPNPLT_ 0 0 0 REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.361328125 2 606.360973 1210.70739 0.43637 0.0002646 0.34974 0.00021207 0.78611 0.00047667 606.3610642675563 34.122 0.086838 34.122 34.065 34.151 0 9 4 3 0 0 0 0.67398 1 6044 6044 1.0715 0 1 1211600 + 24776 18462 15372 15381 29004 29004 0.11046839845221257 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3343505859375 2 562.334759 1122.65496 0.11056 6.2172E-05 0.17431 9.8018E-05 0.28486 0.00016019 562.3346994269697 26.664 0.3514 26.664 26.51 26.861 0 62 25 3 0 0 0 0.56033 1 3892 3892 3.5965 0 1 1009400 24777 13573 15373 15382 29005 29005 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.334759 1122.65496 0.44459 0.00025001 0.020517 1.1537E-05 0.4651 0.00026154 562.3347176289997 108.83 0.70623 108.83 108.69 109.4 0 91 52 2 0 0 0 0.54078 1 26788 26788 6.7232 0 1 38941000 24778 13573 15373 15382 29006 29006 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3350219726562 2 562.334759 1122.65496 0.44513 0.00025031 0.14518 8.1641E-05 0.59031 0.00033195 562.3346446769763 109.47 0.26321 109.47 109.37 109.64 0 46 21 3 0 0 0 0.54078 1 26890 26890 6.7232 0 1 9379000 24779 13573 15373 15382 29007 29007 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.44513 0.00025031 0.14518 8.1641E-05 0.59031 0.00033195 562.3346446769763 109.47 0.26321 109.47 109.37 109.64 0 46 21 3 0 0 0 0.84575 1 26940 26940 3.5965 0 1 9379000 24780 13573 15373 15382 29008 29008 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.3350219726562 2 562.334759 1122.65496 0.50588 0.00028447 0.69853 0.00039281 1.2044 0.00067728 562.3345050649632 108.66 0.44942 112.29 112.17 112.62 3.6355 162 46 4 0 0 0 0.54078 1 26825 26825 6.7232 0 1 137640000 24781 13573 15373 15382 29009 29009 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MSMS UPN47_class_I_Rep_1 2 562.3349609375 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 110 1 113.58 113.08 114.08 3.5835 0 0 0 0.53105 1 27136 27136 3.5965 0 1 24782 13573 15373 15382 29010 29010 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.3343505859375 2 562.334759 1122.65496 0.63501 0.00035709 0.1637 9.2057E-05 0.79871 0.00044914 562.3343733601961 109.34 0.88783 112.87 112.69 113.58 3.5307 299 123 3 0 0 0 0.54078 2 26771 26771;26800 6.7232 0 1 10055000 24783 13573 15373 15382 29011;29012 29011 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MSMS UPN47_class_I_Rep_2 3 562.3346557617188 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.11 1 112.64 112.14 113.14 3.5307 0 0 0 0.53105 1 26558 26558 6.7232 0 1 24784 13573 15373 15382 29013 29013 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3347778320312 2 562.334759 1122.65496 0.50418 0.00028352 0.80527 0.00045283 1.3095 0.00073635 562.3345812860092 108.67 0.68864 112.21 112.09 112.78 3.5382 284 80 4 0 0 0 0.54078 1 26771 26771 6.7232 0 1 114320000 24785 13573 15373 15382 29014 29014 0.09854301502286944 LPHPTVLPLH 10 Unmodified _LPHPTVLPLH_ 0 0 0 L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense L1PA10_dup1083|chr3:37146316-37146735:-|1.0260765240894345|0.2539240334461161|2.01|151.0|27|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.3347778320312 2 562.334759 1122.65496 0.49266 0.00027704 0.53194 0.00029913 1.0246 0.00057617 562.3344506126889 108.69 0.89131 112.36 112.23 113.12 3.6746 225 100 4 0 0 0 0.54078 2 25856 25856;25901 6.7232 0 1 76886000 24786 13573 15373 15382 29015;29016 29015 0.09854301502286944 LPHWRPRA 8 Unmodified _LPHWRPRA_ 0 0 0 HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|82|2|anti-sense HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|82|2|anti-sense HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.337646484375 2 516.796135 1031.57772 NaN NaN NaN NaN NaN NaN NaN 78.865 1 82.16 81.66 82.66 3.295 0 0 0 0.40746 1 19684 19684 0.69038 0 1 24787 8283 15374 15383 29017 29017 0.06319128076597735 LPIAPHYPL 9 Unmodified _LPIAPHYPL_ 0 0 0 REV__L1MB7_dup4534|chr3:120083565-120084137:+|1.2369374337579448|0.0091952429836153|7.07|151.0|8|2|sense REV__L1MB7_dup4534|chr3:120083565-120084137:+|1.2369374337579448|0.0091952429836153|7.07|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 511.0054016113281 2 510.797478 1019.5804 NaN NaN NaN NaN NaN NaN NaN 67.876 1 71.384 70.884 71.884 3.5077 0 0 0 0.39326 1 15528 15528 2.3027 0.24298 1 + 24788 26268 15375 15384 29018 29018 0.07139538690887548 LPIEHKKFGK 10 Unmodified _LPIEHKKFGK_ 0 0 0 ENSG00000188321|ENST00000603380|ZNF559 ENSG00000188321|ENST00000603380|ZNF559 ENSG00000188321|ENST00000603380|ZNF559 MSMS UPN47_class_I_Rep_2 3 598.8594360351562 2 598.861141 1195.70773 NaN NaN NaN NaN NaN NaN NaN 53.533 1 56.86 56.36 57.36 3.3266 0 0 0 0.53105 1 12029 12029 1.6526 0.17072 1 24789 5228 15376 15385 29019 29019 0.1177025956505986 LPIEIPKP 8 Unmodified _LPIEIPKP_ 0 0 0 REV__ENST00000518121.5_1_8:38250464-38262066:+|nuORF REV__ENST00000518121.5_1_8:38250464-38262066:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.7850646972656 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 75.928 1 79.331 78.831 79.831 3.4034 0 0 0 0.40746 1 18767 18767 0.69038 0 1 + 24790 20099 15377 15386 29020 29020 0.1020473394231658 LPIFKNRLVGF 11 Unmodified _LPIFKNRLVGF_ 0 0 0 L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|104|3|anti-sense L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|104|3|anti-sense L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_1 2 435.26922607421875 3 435.267686 1302.78123 NaN NaN NaN NaN NaN NaN NaN 89.868 1 93.542 93.042 94.042 3.6738 0 0 0 0.38417 1 22469 22469 1.3296 0.55311 1 24791 12421 15378 15387 29021 29021 0.1419480800752808 LPIKKIPGP 9 Unmodified _LPIKKIPGP_ 0 0 0 L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|40|1|sense L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|40|1|sense L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|40|1|sense MSMS UPN48_class_I_Rep_3 7 481.7714538574219 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 74.025 1 77.575 77.075 78.075 3.5505 0 0 0 0.40038 1 17339 17339 0.6015 0 1 24792 14604 15379 15388 29022 29022 0.15008702104660188 LPIKKKKRFIS 11 Unmodified _LPIKKKKRFIS_ 0 0 0 REV__L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense REV__L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense MSMS UPN47_class_I_Rep_3 4 453.30535888671875 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 119.96 1 123.38 122.88 123.88 3.4157 0 0 0 0.38417 1 29645 29645 0.094841 0.011491 1 + 24793 28599 15380 15389 29023 29023 0.23275331858417303 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-SECPEP UPN47_class_I_Rep_3 4 481.337158203125 2 480.801174 959.587796 0.13878 6.6727E-05 -0.60414 -0.00029047 -0.46536 -0.00022374 480.8009842370514 88.654 0.028198 92.047 92.027 92.056 3.3931 5 3 2 0 0 0 0.72333 1 22233 22233 0.79363 0 1 29758 24794 16801 15381 15390 29024 29024 0.1063855496696533 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-SECPEP UPN47_class_I_Rep_3 4 481.337158203125 2 480.801174 959.587796 0.13766 6.6185E-05 -0.22212 -0.0001068 -0.084464 -4.061E-05 480.8010784707909 87.809 0.11908 91.196 91.157 91.276 3.3873 13 12 2 0 0 0 0.72333 1 22020 22020 0.79363 0 1 40496 24795 16801 15381 15390 29025 29025 0.1063855496696533 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 480.801174 959.587796 0.26863 0.00012916 -0.2527 -0.0001215 0.015931 7.6595E-06 480.80129337122247 91.984 0.026299 91.984 91.968 91.995 0 0.092316 0.00031949 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 38821 24796 16801 15381 15390 0.1063855496696533 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 480.801174 959.587796 0.2053 9.8709E-05 -0.2365 -0.00011371 -0.031199 -1.5E-05 480.80094101160034 87.282 0.17073 90.919 90.822 90.992 3.6372 -0.062376 8.4273E-05 NaN 0.79363 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 64957 24797 16801 15381 15390 0.1063855496696533 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.801174 959.587796 0.31531 0.0001516 -0.60388 -0.00029035 -0.28857 -0.00013874 480.80075551434544 88.196 0.04512 91.643 91.612 91.657 3.4471 -0.2483 -1.8206E-05 NaN 0.79363 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 26501 24798 16801 15381 15390 0.1063855496696533 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.801174 959.587796 0.30727 0.00014774 -0.88217 -0.00042415 -0.5749 -0.00027641 480.8005910051921 87.327 0.060158 90.768 90.732 90.792 3.4407 -0.21411 -0.00053661 NaN 0.79363 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 56820 24799 16801 15381 15390 0.1063855496696533 LPILVMKF 8 Unmodified _LPILVMKF_ 0 0 0 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-3|GPN1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 480.801174 959.587796 0.12884 6.1945E-05 -0.2887 -0.00013881 -0.15986 -7.6862E-05 480.8009796168602 87.276 0.14472 90.895 90.784 90.929 3.6187 -0.087189 3.4079E-05 NaN 0.79363 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 94488 24800 16801 15381 15390 0.1063855496696533 LPINFVRIM 9 Unmodified _LPINFVRIM_ 0 0 0 REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|37|2|sense REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|37|2|sense MSMS UPN47_class_I_Rep_3 4 552.2719116210938 2 551.825712 1101.63687 NaN NaN NaN NaN NaN NaN NaN 62.689 1 65.859 65.359 66.359 3.1698 0 0 0 0.38639 1 14880 14880 3.9444 0.66309 1 + 24801 27948 15382 15391 29026 29026 0.09011843255916574 LPIQYNVG 8 Unmodified _LPIQYNVG_ 0 0 0 L1PREC2_dup6385|chr14:30575302-30576633:+|1.1491537652566357|0.0216889919622827|5.73|151.0|77|3|anti-sense;L1PREC2_dup3447|chr7:94572464-94574689:-|1.1210908752339648|0.1703044678030472|2.72|151.0|136|3|anti-sense;L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|136|1|anti-sense;L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|180|3|anti-sense;L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|216|2|anti-sense L1PREC2_dup6385|chr14:30575302-30576633:+|1.1491537652566357|0.0216889919622827|5.73|151.0|77|3|anti-sense L1PREC2_dup6385|chr14:30575302-30576633:+|1.1491537652566357|0.0216889919622827|5.73|151.0|77|3|anti-sense MSMS UPN47_class_I_Rep_2 3 452.25177001953125 2 452.25036 902.486168 NaN NaN NaN NaN NaN NaN NaN 26.179 1 29.673 29.173 30.173 3.4945 0 0 0 0.40625 1 3749 3749 2.3027 0 1 24802 13702 15383 15392 29027 29027 0.031023998687601306 LPIVRWVDCK 10 Unmodified _LPIVRWVDCK_ 0 0 0 L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|188|1|anti-sense L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|188|1|anti-sense L1PA6_dup5122|chr14:53423804-53429913:+|1.5538133095794642|0.0816516364168691|4.25|151.0|188|1|anti-sense MSMS UPN46_class_I_Rep_3 1 410.23175048828125 3 410.233876 1227.6798 NaN NaN NaN NaN NaN NaN NaN 107.3 1 107.3 106.8 107.8 0 0 0 0 0.53105 1 26174 26174 5.4027 0.35519 1 24803 14659 15384 15393 29028 29028 0.0750661331333049 LPIWMMET 8 Unmodified _LPIWMMET_ 0 0 0 ENST00000497497.1_1_10:119013719-119036774:+|nuORF;ENSG00000165646|ENST00000644641|SLC18A2 ENST00000497497.1_1_10:119013719-119036774:+|nuORF ENST00000497497.1_1_10:119013719-119036774:+|nuORF MSMS UPN48_class_I_Rep_1 5 510.747802734375 2 510.748282 1019.48201 NaN NaN NaN NaN NaN NaN NaN 24.581 1 28.147 27.647 28.647 3.5667 0 0 0 0.40738 1 2734 2734 0.79363 0 1 24804 4193 15385 15394 29029 29029 -0.026951489408133966 LPIYAYLF 8 Unmodified _LPIYAYLF_ 0 0 0 L1ME2z_dup1582|chr4:42052081-42053408:+|1.6961380437174365|0.2502391148160784|2.76|151.0|84|3|anti-sense L1ME2z_dup1582|chr4:42052081-42053408:+|1.6961380437174365|0.2502391148160784|2.76|151.0|84|3|anti-sense L1ME2z_dup1582|chr4:42052081-42053408:+|1.6961380437174365|0.2502391148160784|2.76|151.0|84|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.2809143066406 2 500.281129 998.547705 -0.25696 -0.00012855 -0.03207 -1.6044E-05 -0.28903 -0.0001446 500.2811966750586 32.305 0.10054 36.018 35.942 36.043 3.7131 11 8 2 0 0 0 0.82752 1 5542 5542 2.8892 0 1 32235 24805 12553 15386 15395 29030 29030 0.04837331568023728 LPIYPHIQ 8 Unmodified _LPIYPHIQ_ 0 0 0 REV__L1PA11_dup3918|chr19:43968587-43969334:+|1.0949937938185086|0.1799274063946948|2.61|150.0|9|2|sense REV__L1PA11_dup3918|chr19:43968587-43969334:+|1.0949937938185086|0.1799274063946948|2.61|150.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 490.7815856933594 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 81.688 1 81.688 81.188 82.188 0 0 0 0 0.40738 1 19306 19306 0.79363 0 1 + 24806 29034 15387 15396 29031 29031 0.05850965656793505 LPIYWLLPN 9 Unmodified _LPIYWLLPN_ 0 0 0 REV__L1M4a2_dup477|chr4:77902406-77903959:+|2.7115677293692717|0.2044542088011733|3.73|151.0|64|1|anti-sense REV__L1M4a2_dup477|chr4:77902406-77903959:+|2.7115677293692717|0.2044542088011733|3.73|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_2 6 564.94189453125 2 564.826235 1127.63792 NaN NaN NaN NaN NaN NaN NaN 41.282 1 45.032 44.532 45.532 3.7508 0 0 0 0.38299 1 7526 7526 4.756 0 1 + 24807 24518 15388 15397 29032 29032 0.0792038089646212 LPKCWDYTCK 10 Unmodified _LPKCWDYTCK_ 0 0 0 AluJb_dup117095|chr19:40362432-40362737:-|1.6235151210654082|0.3549127245298997|2.19|151.0|19|1|anti-sense AluJb_dup117095|chr19:40362432-40362737:-|1.6235151210654082|0.3549127245298997|2.19|151.0|19|1|anti-sense AluJb_dup117095|chr19:40362432-40362737:-|1.6235151210654082|0.3549127245298997|2.19|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_1 5 628.7954711914062 2 628.793752 1255.57295 NaN NaN NaN NaN NaN NaN NaN 40.681 1 44.187 43.687 44.687 3.506 0 0 0 0.53105 1 7328 7328 3.2813 0.78282 1 24808 28 15389 15398 29033 29033 -0.044613049633653645 LPKDSEKK 8 Unmodified _LPKDSEKK_ 0 0 0 REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.7745361328125 2 472.7742 943.533846 -0.33672 -0.00015919 -0.26202 -0.00012388 -0.59874 -0.00028307 472.77381565365005 30.062 0.4794 33.807 33.531 34.01 3.7449 49 33 2 0 0 0 0.82752 1 4843 4843 10.824 2.0785 1 90769 + 24809 18462 15390 15399 29034 29034 0.05982054068954312 LPKEALRRVGE 11 Unmodified _LPKEALRRVGE_ 0 0 0 L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|51|3|sense L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|51|3|sense L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|51|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.8793334960938 2 634.377686 1266.74082 0.61934 0.0003929 -0.17303 -0.00010976 0.44632 0.00028313 634.3781052039409 103.81 0.38365 107.56 107.5 107.88 3.7434 99 61 2 0 0 0 0.65271 1 24511 24511 2.9952 0.26005 1 67264000 24810 9361 15391 15400 29035 29035 0.11811841617122809 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MULTI-MSMS UPN46_class_I_Rep_3 1 643.3626708984375 2 643.363524 1284.7125 0.75329 0.00048464 -2.7009 -0.0017377 -1.9476 -0.001253 643.3625649393359 107.82 0.5577 107.82 107.74 108.3 0 140 52 4 0 0 0 0.56033 1 26320 26320 3.5965 0.31518 1 53564000 24811 5572 15392 15401 29036 29036 0.08152820436180264 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN46_class_I_Rep_3 1 643.3600463867188 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 55.628 1 55.628 55.128 56.128 0 0 0 0 0.53105 1 12095 12095 1.4819 0.41044 1 24812 5572 15392 15401 29037 29037 0.08152820436180264 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN46_class_I_Rep_3 1 643.3626098632812 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 69.344 1 69.344 68.844 69.844 0 0 0 0 0.53105 1 15885 15885 2.9952 1.5133 1 24813 5572 15392 15401 29038 29038 0.08152820436180264 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN47_class_I_Rep_1 2 643.3624267578125 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 57.02 1 60.477 59.977 60.977 3.4572 0 0 0 0.53105 1 13068 13068 1.4819 0.95714 1 24814 5572 15392 15401 29039 29039 0.08152820436180264 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN47_class_I_Rep_1 2 643.363037109375 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 57.615 1 61.052 60.552 61.552 3.437 0 0 0 0.53105 1 13241 13241 2.9952 1.5133 1 24815 5572 15392 15401 29040 29040 0.08152820436180264 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN47_class_I_Rep_3 4 643.3621215820312 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 61.69 1 64.856 64.356 65.356 3.1667 0 0 0 0.53105 1 14571 14571 1.4819 0.8804 1 24816 5572 15392 15401 29041 29041 0.08152820436180264 LPKHMQFKRT 10 Unmodified _LPKHMQFKRT_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN48_class_I_Rep_1 5 643.3612060546875 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 54.134 1 57.648 57.148 58.148 3.5143 0 0 0 0.53105 1 11432 11432 1.4819 0.28856 1 24817 5572 15392 15401 29042 29042 0.08152820436180264 LPKKLHFRRR 10 Unmodified _LPKKLHFRRR_ 0 0 0 REV__Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|146|3|anti-sense REV__Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|146|3|anti-sense MSMS UPN46_class_I_Rep_3 1 450.9577331542969 3 450.957957 1349.85204 NaN NaN NaN NaN NaN NaN NaN 86.491 1 86.491 85.991 86.991 0 0 0 0 0.53105 1 20677 20677 0.15932 0 1 + 24818 32394 15393 15402 29043 29043 0.19110945835723214 LPKKLYFRSTF 11 Unmodified _LPKKLYFRSTF_ 0 0 0 REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|140|3|anti-sense REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|140|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 467.1015930175781 3 467.274729 1398.80236 0.12685 5.9274E-05 -0.27773 -0.00012978 -0.15088 -7.0501E-05 467.27462016302064 43.17 0.55799 46.931 46.72 47.278 3.7617 60 43 2 0 0 0 22.551 1 8129 8129 1.2148 0 1 162470 + 24819 32437 15394 15403 29044 29044 0.11890773316395098 LPKKLYFRSTF 11 Unmodified _LPKKLYFRSTF_ 0 0 0 REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|140|3|anti-sense REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|140|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 467.274729 1398.80236 -0.26301 -0.0001229 -0.84338 -0.00039409 -1.1064 -0.00051699 467.2742431112502 43.783 0.16973 47.141 47.041 47.211 3.358 0.1356 -0.00060526 NaN 1.2148 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 42761 + 24820 32437 15394 15403 0.11890773316395098 LPKKLYFRSTF 11 Unmodified _LPKKLYFRSTF_ 0 0 0 REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|140|3|anti-sense REV__Tigger1_dup4184|chr5:81537483-81539758:+|1.472059024306717|0.0401248775057086|5.2|151.0|140|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 467.274729 1398.80236 0.11451 5.3509E-05 -0.35228 -0.00016461 -0.23776 -0.0001111 467.27464662877355 43.304 0.48132 46.943 46.585 47.066 3.6385 -0.06206 8.3186E-05 NaN 1.2148 65 40 3 NaN NaN NaN NaN 0 NaN NaN 0 134800 + 24821 32437 15394 15403 0.11890773316395098 LPKLKPIISD 10 Unmodified _LPKLKPIISD_ 0 0 0 ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D ENSG00000168918|ENST00000445964|INPP5D ENSG00000168918|ENST00000445964|INPP5D MSMS UPN47_class_I_Rep_2 3 562.0224609375 2 562.357899 1122.70125 NaN NaN NaN NaN NaN NaN NaN 107.13 1 110.67 110.17 111.17 3.5345 0 0 0 0.53105 1 25921 25921 1.6526 0 1 24822 4395 15395 15404 29045 29045 0.14480321613700653 LPKLNYAYL 9 Unmodified _LPKLNYAYL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MSMS UPN47_class_I_Rep_1 2 547.7481689453125 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 117.93 1 121.53 121.03 122.03 3.6036 0 0 0 0.40038 1 29248 29248 0.6015 0 1 + 24823 20973 15396 15405 29046 29046 0.07411790516789551 LPKLPHGA 8 Unmodified _LPKLPHGA_ 0 0 0 REV__ENSG00000186212|ENST00000334306|SOWAHB REV__ENSG00000186212|ENST00000334306|SOWAHB MULTI-MSMS UPN47_class_I_Rep_1 2 416.7559509277344 2 416.755613 831.496673 0.099751 4.1572E-05 1.5434 0.00064322 1.6432 0.00068479 416.7560589880585 110.73 0.14268 114.31 114.27 114.41 3.5836 31 16 3 0 0 0 0.82752 1 27302 27302 0.79363 0 1 324760 + 24824 20883 15397 15406 29047 29047 0.07418427313848497 LPKLPHGA 8 Unmodified _LPKLPHGA_ 0 0 0 REV__ENSG00000186212|ENST00000334306|SOWAHB REV__ENSG00000186212|ENST00000334306|SOWAHB MULTI-MATCH UPN46_class_I_Rep_3 1 2 416.755613 831.496673 0.08472 3.5307E-05 2.7417 0.0011426 2.8264 0.0011779 416.7560576107548 114.54 0.03775 114.54 114.51 114.55 0 0.082073 0.0011019 NaN 0.79363 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 24906 + 24825 20883 15397 15406 0.07418427313848497 LPKLPHGA 8 Unmodified _LPKLPHGA_ 0 0 0 REV__ENSG00000186212|ENST00000334306|SOWAHB REV__ENSG00000186212|ENST00000334306|SOWAHB MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 416.755613 831.496673 0.099751 4.1572E-05 1.5434 0.00064322 1.6432 0.00068479 416.7560589880585 110.73 0.14268 114.31 114.27 114.41 3.5836 -0.14727 0.00010306 NaN 0.79363 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 324760 + 24826 20883 15397 15406 0.07418427313848497 LPKLPHGA 8 Unmodified _LPKLPHGA_ 0 0 0 REV__ENSG00000186212|ENST00000334306|SOWAHB REV__ENSG00000186212|ENST00000334306|SOWAHB MULTI-MATCH UPN48_class_I_Rep_2 6 2 416.755613 831.496673 0.082137 3.4231E-05 1.1994 0.00049988 1.2816 0.00053411 416.7560302786032 110.86 0.10075 114.52 114.46 114.56 3.669 0.065194 -0.00018363 NaN 0.79363 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 24618 + 24827 20883 15397 15406 0.07418427313848497 LPKLRKAL 8 Unmodified _LPKLRKAL_ 0 0 0 REV__ENSG00000171729|ENST00000376008|TMEM51 REV__ENSG00000171729|ENST00000376008|TMEM51 MSMS UPN47_class_I_Rep_2 3 469.8306884765625 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 91.04 1 94.501 94.001 95.001 3.4613 0 0 0 0.40404 1 22554 22554 5.2307 0 1 + 24828 20420 15398 15407 29048 29048 0.17235524198792973 LPKNIFLP 8 Unmodified _LPKNIFLP_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MSMS UPN47_class_I_Rep_3 4 471.29248046875 2 471.294571 940.574589 NaN NaN NaN NaN NaN NaN NaN 30.682 1 33.993 33.493 34.493 3.3116 0 0 0 0.39819 1 5128 5128 8.5933 0 1 + 24829 18368 15399 15408 29049 29049 0.1019244017921892 LPKQTKAKKNL 11 Unmodified _LPKQTKAKKNL_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|20|1|sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|20|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3775024414062 2 634.906079 1267.79761 0.51361 0.00032609 3.3414 0.0021215 3.855 0.0024476 634.907798709389 105.91 0.04483 109.45 109.42 109.46 3.5367 8 6 2 0 0 0 22.551 1 25911 25911 1.3295 0 1 208300 + 24830 24413 15400 15409 29050 29050 0.17441889173665004 LPKTKASVPR 10 Unmodified _LPKTKASVPR_ 0 0 0 REV__nc|ENSG00000134900|P29144|TPP2 REV__nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS UPN48_class_I_Rep_1 5 548.8455810546875 2 548.84549 1095.67643 0.47421 0.00026027 0.039852 2.1872E-05 0.51407 0.00028214 548.8454015245841 51.141 1.0563 54.665 54.163 55.219 3.5246 170 73 3 0 0 0 0.53794 1 10571 10571 7.1017 0.37856 1 700690 + 24831 19119 15401 15410 29051 29051 0.1324168653097786 LPKTKKFFLKI 11 Unmodified _LPKTKKFFLKI_ 0 0 0 REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 454.93817138671875 3 454.967236 1361.87988 0.090949 4.1379E-05 0.57839 0.00026315 0.66934 0.00030453 454.96742021813964 43.008 0.25875 46.65 46.494 46.753 3.6415 30 23 2 0 0 0 22.551 1 7931 7931 0.50596 0.051438 1 111710 + 24832 22182 15402 15411 29052 29052 0.2134141125259248 LPKYKILF 8 Unmodified _LPKYKILF_ 0 0 0 REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 511.326904296875 2 511.325871 1020.63719 0.3173 0.00016225 0.63532 0.00032486 0.95262 0.0004871 511.82740088671227 89.305 0.036087 92.698 92.673 92.709 3.3931 6 4 2 0 0 0 0.72333 1 22388 22388 0.69038 0 1 22859 + 24833 19000 15403 15412 29053 29053 0.12769586247429743 LPKYKILF 8 Unmodified _LPKYKILF_ 0 0 0 REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 511.325871 1020.63719 0.31959 0.00016341 2.8885 0.001477 3.2081 0.0016404 511.32726490242993 92.387 0.045326 92.387 92.352 92.397 0 -0.15539 0.0018018 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 62187 + 24834 19000 15403 15412 0.12769586247429743 LPLAKFKM 8 Unmodified _LPLAKFKM_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 474.29071044921875 2 474.290974 946.567395 0.10838 5.1402E-05 -0.27084 -0.00012846 -0.16246 -7.7055E-05 474.29079672646054 85.574 0.41581 89.18 88.953 89.369 3.6059 53 44 2 0 0 0 0.82752 1 20478 20478 0.69038 0 1 122170 24835 12637 15404 15413 29054 29054 0.09197384307151424 LPLAKFKM 8 Unmodified _LPLAKFKM_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense MSMS UPN48_class_I_Rep_2 6 474.2906188964844 2 474.290974 946.567395 NaN NaN NaN NaN NaN NaN NaN 85.551 1 89.257 88.757 89.757 3.7058 0 0 0 0.40746 1 20346 20346 0.69038 0 1 24836 12637 15404 15413 29055 29055 0.09197384307151424 LPLAKFKM 8 Unmodified _LPLAKFKM_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense MSMS UPN48_class_I_Rep_3 7 474.29083251953125 2 474.290974 946.567395 NaN NaN NaN NaN NaN NaN NaN 85.404 1 89.153 88.653 89.653 3.7494 0 0 0 0.40746 1 20251 20251 0.69038 0 1 24837 12637 15404 15413 29056 29056 0.09197384307151424 LPLAKFKM 8 Unmodified _LPLAKFKM_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 474.290974 946.567395 0.25103 0.00011906 -0.90357 -0.00042855 -0.65254 -0.00030949 474.290334327668 89.025 0.052864 89.025 89.01 89.063 0 -0.13523 -0.00070296 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 80390 24838 12637 15404 15413 0.09197384307151424 LPLAKFKM 8 Unmodified _LPLAKFKM_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 474.290974 946.567395 0.061917 2.9367E-05 0.026096 1.2377E-05 0.088014 4.1744E-05 474.2907227656077 85.952 0.063812 89.324 89.273 89.337 3.3716 0.16318 0.0001789 NaN 0.69038 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 84403 24839 12637 15404 15413 0.09197384307151424 LPLAKFKM 8 Unmodified _LPLAKFKM_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|75|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 474.290974 946.567395 0.21618 0.00010253 0.037273 1.7678E-05 0.25345 0.00012021 474.29098404282104 85.407 0.22766 89.113 88.931 89.158 3.7058 -0.047466 0.0001895 NaN 0.69038 33 29 2 NaN NaN NaN NaN 0 NaN NaN 0 62533 24840 12637 15404 15413 0.09197384307151424 LPLCGRSYKI 10 Unmodified _LPLCGRSYKI_ 0 0 0 MLT1H_dup7702|chr14:63511042-63511574:+|1.17068455532913|0.0573738157484698|4.35|151.0|27|1|anti-sense MLT1H_dup7702|chr14:63511042-63511574:+|1.17068455532913|0.0573738157484698|4.35|151.0|27|1|anti-sense MLT1H_dup7702|chr14:63511042-63511574:+|1.17068455532913|0.0573738157484698|4.35|151.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 575.325439453125 2 575.326076 1148.6376 0.046379 2.6683E-05 0.21793 0.00012538 0.26431 0.00015206 575.3261614969265 29.975 0.17771 33.467 33.369 33.547 3.4923 21 15 2 0 0 0 0.56118 1 4898 4898 2.9952 0.69251 1 62470 24841 16428 15405 15414 29057 29057 0.06922637904949624 LPLDAQVLE 9 Unmodified _LPLDAQVLE_ 0 0 0 REV__ENSG00000168267|ENST00000376504|PTF1A REV__ENSG00000168267|ENST00000376504|PTF1A MULTI-MSMS UPN47_class_I_Rep_2 3 499.2818908691406 2 499.281857 996.549162 0.055896 2.7908E-05 0.040946 2.0444E-05 0.096842 4.8352E-05 499.2817865990683 46.425 1.3937 49.776 49.255 50.648 3.3515 219 96 4 0 0 0 0.46434 1 9985 9985 4.3292 0 1 1289900 + 24842 20266 15406 15415 29058 29058 0.05074920866138655 LPLEGAAEDW 10 Unmodified _LPLEGAAEDW_ 0 0 0 ENST00000343855.5_1_7:150026962-150027241:+|nuORF ENST00000343855.5_1_7:150026962-150027241:+|nuORF ENST00000343855.5_1_7:150026962-150027241:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 550.7666625976562 2 550.766571 1099.51859 0.53214 0.00029309 -0.51132 -0.00028162 0.020821 1.1468E-05 551.2680352030715 51.083 0.49608 54.3 53.994 54.49 3.2163 39 22 2 0 0 0 0.56078 1 11338 11338 3.2813 0.97858 1 70951 24843 6248 15407 15416 29059 29059 -0.027188575189029507 LPLEKVYSL 9 Unmodified _LPLEKVYSL_ 0 0 0 ENST00000487090.1_1_22:20812284-20819767:-|nuORF;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENSG00000099910|ENST00000328879|KLHL22 ENST00000487090.1_1_22:20812284-20819767:-|nuORF ENST00000487090.1_1_22:20812284-20819767:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 531.3158569335938 2 531.3157 1060.61685 0.31047 0.00016496 0.16514 8.774E-05 0.47561 0.0002527 531.3156998430259 60.071 0.67131 63.236 62.9 63.571 3.1651 91 41 3 0 0 0 0.10225 2 14074 14074;14121 33.445 7.1768 1 250350 24844 1451 15408 15417 29060;29061 29060 0.0889637079694694 LPLFRPRY 8 Unmodified _LPLFRPRY_ 0 0 0 LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|20|3|sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|20|3|sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|20|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 531.3157348632812 2 531.316369 1060.61818 0.37915 0.00020145 -1.1513 -0.00061169 -0.77213 -0.00041024 531.3156687838823 59.587 0.72673 62.985 62.664 63.391 3.3982 63 46 2 0 0 0 0.72333 1 13828 13828 13.508 0 1 195580 24845 15697 15409 15418 29062 29062 0.09030049676357521 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 434.2921142578125 2 434.292362 866.570172 -0.40307 -0.00017505 -0.011662 -5.0647E-06 -0.41473 -0.00018011 434.2922722632543 63.204 0.39326 66.46 66.396 66.789 3.2558 54 29 2 0 0 0 0.82752 1 15036 15036 0.79363 0 1 512170 + 24846 26900 15410 15419 29063 29063 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 434.29217529296875 2 434.292362 866.570172 0.065765 2.8561E-05 -0.42444 -0.00018433 -0.35867 -0.00015577 434.2921110706689 63.681 0.39327 67.139 67.022 67.415 3.4578 51 31 2 0 0 0 0.82752 1 14361 14361 0.79363 0 1 602480 + 24847 26900 15410 15419 29064 29064 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 434.29217529296875 2 434.292362 866.570172 0.15094 6.5553E-05 -0.65787 -0.00028571 -0.50693 -0.00022015 434.2919891424146 62.987 0.26599 66.496 66.354 66.62 3.5091 31 19 2 0 0 0 0.72333 1 14025 14025 0.79363 0 1 219020 + 24848 26900 15410 15419 29065 29065 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 434.292362 866.570172 0.021541 9.3552E-06 -0.35633 -0.00015475 -0.33478 -0.00014539 434.2921288369395 63.213 0.2233 66.572 66.444 66.668 3.3595 0.039193 -8.6758E-05 NaN 0.79363 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 216230 + 24849 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 434.292362 866.570172 -0.4194 -0.00018214 0.065618 2.8497E-05 -0.35378 -0.00015365 434.2923821833175 63.993 0.2645 67.248 67.151 67.416 3.2556 0.095064 0.00044236 NaN 0.79363 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 153320 + 24850 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 434.292362 866.570172 -0.42988 -0.0001867 -0.25834 -0.0001122 -0.68823 -0.00029889 434.29232789019807 64.038 0.30239 67.212 67.093 67.395 3.1741 0.059121 0.00016098 NaN 0.79363 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 81680 + 24851 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 434.292362 866.570172 -0.44054 -0.00019132 0.048853 2.1216E-05 -0.39169 -0.00017011 434.29232508240784 63.406 0.22241 66.576 66.494 66.716 3.1698 0.042631 0.00026517 NaN 0.79363 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 157980 + 24852 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.065765 2.8561E-05 -0.42444 -0.00018433 -0.35867 -0.00015577 434.2921110706689 63.681 0.39327 67.139 67.022 67.415 3.4578 -0.014225 1.671E-05 NaN 0.79363 51 31 2 NaN NaN NaN NaN 0 NaN NaN 0 602480 + 24853 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.075894 3.296E-05 -0.59701 -0.00025928 -0.52111 -0.00022632 434.2920214346061 63.093 0.23161 66.555 66.429 66.661 3.4625 0.022014 -0.00029581 NaN 0.79363 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 417460 + 24854 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.292362 866.570172 0.14007 6.0829E-05 -0.47645 -0.00020692 -0.33638 -0.00014609 434.2920688769085 63.678 0.32481 67.152 67.094 67.418 3.4743 -0.0010571 -2.8466E-05 NaN 0.79363 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 471220 + 24855 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.292362 866.570172 0.14528 6.3095E-05 -0.55538 -0.0002412 -0.4101 -0.0001781 434.2920522272469 63.066 0.1917 66.54 66.415 66.607 3.4738 0.0068762 -0.00025965 NaN 0.79363 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 206780 + 24856 26900 15410 15419 0.13154975756299336 LPLGKLRA 8 Unmodified _LPLGKLRA_ 0 0 0 REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense REV__L1MC4_dup2816|chr2:98449000-98449708:-|1.0837211793928323|0.0140668460765365|6.27|151.0|23|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 434.292362 866.570172 0.15569 6.7617E-05 -0.75644 -0.00032852 -0.60075 -0.0002609 434.29200022794276 63.505 0.12359 67.014 66.975 67.098 3.5091 -0.1389 -0.00027167 NaN 0.79363 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 143960 + 24857 26900 15410 15419 0.13154975756299336 LPLHKIILD 9 Unmodified _LPLHKIILD_ 0 0 0 LTR47B|chr1:167654178-167654576:-|1.63491583682559|0.011582328932218|7.14|151.0|12|3|sense LTR47B|chr1:167654178-167654576:-|1.63491583682559|0.011582328932218|7.14|151.0|12|3|sense LTR47B|chr1:167654178-167654576:-|1.63491583682559|0.011582328932218|7.14|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 531.3369750976562 2 531.33951 1060.66447 NaN NaN NaN NaN NaN NaN NaN 73.635 1 73.635 73.135 74.135 0 0 0 0 0.39428 1 17077 17077 2.0598 0 1 24858 15646 15411 15420 29066 29066 0.13656069787793967 LPLHPLPLG 9 Unmodified _LPLHPLPLG_ 0 0 0 ENST00000336715.10_1_1:151259269-151259335:+|nuORF ENST00000336715.10_1_1:151259269-151259335:+|nuORF ENST00000336715.10_1_1:151259269-151259335:+|nuORF MSMS UPN47_class_I_Rep_2 3 478.80194091796875 2 478.80002 955.585488 NaN NaN NaN NaN NaN NaN NaN 68.696 1 71.965 71.465 72.465 3.2696 0 0 0 0.39326 1 16641 16641 2.3027 0 1 24859 6208 15412 15421 29067 29067 0.10591842553526476 LPLIWMKD 8 Unmodified _LPLIWMKD_ 0 0 0 MER51C_dup127|chr13:20071275-20071809:-|1.7845210864030534|0.3727012110989524|2.26|151.0|16|1|anti-sense;MER51C_dup24|chr2:152752421-152753020:-|1.0565248238586673|0.1293568120794949|3.03|151.0|37|3|anti-sense;MER51C_dup134|chr15:64096864-64097498:-|1.4999554316521333|0.1569732256907328|3.26|151.0|20|1|anti-sense MER51C_dup127|chr13:20071275-20071809:-|1.7845210864030534|0.3727012110989524|2.26|151.0|16|1|anti-sense MER51C_dup127|chr13:20071275-20071809:-|1.7845210864030534|0.3727012110989524|2.26|151.0|16|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 508.2117004394531 2 508.285889 1014.55722 -0.41912 -0.00021303 0.16276 8.2727E-05 -0.25636 -0.00013031 508.28655763963366 26.937 0.50899 30.279 29.911 30.42 3.3422 64 41 2 0 0 0 0.72333 1 3992 3992 0.79363 0 1 49648 24860 16086 15413 15422 29068 29068 0.05052776581919716 LPLLDSSTLLK 11 Unmodified _LPLLDSSTLLK_ 0 0 0 REV__AluSq_dup15312|chr16:89406897-89407206:+|1.4197124566446435|0.0249312659600297|5.83|151.0|20|3|anti-sense REV__AluSq_dup15312|chr16:89406897-89407206:+|1.4197124566446435|0.0249312659600297|5.83|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 400.5800476074219 3 400.579706 1198.71729 NaN NaN NaN NaN NaN NaN NaN 103.81 1 107.33 106.83 107.83 3.5205 0 0 0 0.38417 1 25463 25463 2.4348 0 1 + 24861 17118 15414 15423 29069 29069 0.1258798305993878 LPLLDSSTLLK 11 Unmodified _LPLLDSSTLLK_ 0 0 0 REV__AluSq_dup15312|chr16:89406897-89407206:+|1.4197124566446435|0.0249312659600297|5.83|151.0|20|3|anti-sense REV__AluSq_dup15312|chr16:89406897-89407206:+|1.4197124566446435|0.0249312659600297|5.83|151.0|20|3|anti-sense MSMS UPN48_class_I_Rep_3 7 400.5799560546875 3 400.579706 1198.71729 NaN NaN NaN NaN NaN NaN NaN 104.27 1 107.99 107.49 108.49 3.7192 0 0 0 0.3803 1 24615 24615 7.0371 0 1 + 24862 17118 15414 15423 29070 29070 0.1258798305993878 LPLLGLHKH 9 Unmodified _LPLLGLHKH_ 0 0 0 REV__L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|42|3|anti-sense REV__L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_2 3 514.323486328125 2 514.324194 1026.63383 NaN NaN NaN NaN NaN NaN NaN 76.21 1 79.532 79.032 80.032 3.3216 0 0 0 0.40038 1 18856 18856 0.6015 0 1 + 24863 28465 15415 15424 29071 29071 0.1215833619339719 LPLLGYSVSI 10 Unmodified _LPLLGYSVSI_ 0 0 0 ENSG00000006607|ENST00000264042|FARP2 ENSG00000006607|ENST00000264042|FARP2 ENSG00000006607|ENST00000264042|FARP2 MSMS UPN47_class_I_Rep_1 2 531.3157348632812 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 59.835 1 63.233 62.733 63.733 3.3982 0 0 0 0.53105 1 13923 13923 21.537 3.3906 1 24864 721 15416 15425 29072 29072 0.0889637079694694 LPLLHLIEA 9 Unmodified _LPLLHLIEA_ 0 0 0 REV__ENST00000374720.7_1_9:108128634-108128685:+|nuORF REV__ENST00000374720.7_1_9:108128634-108128685:+|nuORF MSMS UPN47_class_I_Rep_2 3 509.8072814941406 2 509.81841 1017.62227 NaN NaN NaN NaN NaN NaN NaN 15.345 1 18.731 18.231 19.231 3.3864 0 0 0 0.39326 1 794 794 2.3027 0 1 + 24865 21999 15417 15426 29073 29073 0.11416094379421793 LPLLKVHYL 9 Unmodified _LPLLKVHYL_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MSMS UPN47_class_I_Rep_2 3 548.3268432617188 2 548.349877 1094.6852 NaN NaN NaN NaN NaN NaN NaN 110.61 1 114.14 113.64 114.64 3.5271 0 0 0 0.40038 1 26926 26926 0.6015 0.076735 1 + 24866 20500 15418 15427 29074 29074 0.14164660167466536 LPLLLPPQT 9 Unmodified _LPLLLPPQT_ 0 0 0 ENST00000555109.1_1_14:24970801-24977459:+|nuORF ENST00000555109.1_1_14:24970801-24977459:+|nuORF ENST00000555109.1_1_14:24970801-24977459:+|nuORF MSMS UPN48_class_I_Rep_1 5 496.3114318847656 2 496.312961 990.611368 NaN NaN NaN NaN NaN NaN NaN 81.013 1 84.576 84.076 85.076 3.5624 0 0 0 0.40098 1 19310 19310 0.45834 0 1 24867 7426 15419 15428 29075 29075 0.11568692005130288 LPLMVYPFF 9 Unmodified _LPLMVYPFF_ 0 0 0 LTR85c_dup384|chr5:81644190-81644871:+|2.47563056321895|0.0219391088528404|6.82|151.0|35|2|anti-sense LTR85c_dup384|chr5:81644190-81644871:+|2.47563056321895|0.0219391088528404|6.82|151.0|35|2|anti-sense LTR85c_dup384|chr5:81644190-81644871:+|2.47563056321895|0.0219391088528404|6.82|151.0|35|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.8025512695312 2 563.803914 1125.59328 0.47956 0.00027038 -0.17022 -9.5968E-05 0.30934 0.00017441 563.803648333024 35.723 0.5203 39.233 38.91 39.431 3.5101 71 50 2 0 0 0 0.48414 1 5845 5845 2.3027 0 1 116770 24868 15721 15420 15429 29076 29076 0.03550233758755894 LPLNELSLY 9 Unmodified _LPLNELSLY_ 0 0 0 L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|42|3|anti-sense L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|42|3|anti-sense L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_2 3 531.3155517578125 2 531.297507 1060.58046 NaN NaN NaN NaN NaN NaN NaN 59.863 1 63.136 62.636 63.636 3.2731 0 0 0 0.24828 1 13966 13966 13.508 2.3934 1 24869 13119 15421 15430 29077 29077 0.05259493900257439 LPLRFPTVPQ 10 Unmodified _LPLRFPTVPQ_ 0 0 0 ENST00000462715.1_1_1:36602806-36603094:-|nuORF ENST00000462715.1_1_1:36602806-36603094:-|nuORF ENST00000462715.1_1_1:36602806-36603094:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 0.36714 0.00021454 0.11115 6.4949E-05 0.47829 0.00027949 584.3478020102085 34.609 0.061153 34.609 34.586 34.647 0 7 3 3 0 0 0 0.56333 1 6204 6204 1.4819 0.15237 1 561560 24870 6871 15422 15431 29078 29078 0.10450570673765469 LPLSHDDV 8 Unmodified _LPLSHDDV_ 0 0 0 nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4 nc|ENSG00000137166|Q8IVH2-3|FOXP4 nc|ENSG00000137166|Q8IVH2-3|FOXP4 MULTI-SECPEP UPN47_class_I_Rep_3 4 447.8217468261719 2 448.229625 894.444697 -0.19887 -8.9139E-05 -1.3298 -0.00059603 -1.5286 -0.00068517 448.2294975366465 109.25 0.23851 112.78 112.68 112.92 3.5347 72 31 3 0 0 0 0.72333 1 26843 26843 0.69038 0 1 3428700 24871 3010 15423 15432 29079 29079 -0.006747808905743113 LPLTEKMM 8 Unmodified _LPLTEKMM_ 0 0 0 REV__L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|153|3|sense REV__L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|153|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 481.7562561035156 2 481.756107 961.49766 0.24992 0.0001204 0.41454 0.00019971 0.66447 0.00032011 481.75622467317834 51.624 0.70421 55.266 54.893 55.598 3.6413 132 68 3 0 0 0 0.82752 1 10626 10626 7.9102 0 1 641450 + 24872 29068 15424 15433 29080 29080 0.015371375762356365 LPLVLPPPP 9 Unmodified _LPLVLPPPP_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS UPN47_class_I_Rep_1 2 471.7960510253906 2 471.804771 941.59499 0.135 6.3693E-05 -0.46567 -0.0002197 -0.33067 -0.00015601 471.80455599958213 59.427 0.34226 62.826 62.735 63.077 3.3982 25 22 2 0 0 0 0.37662 1 13803 13803 9.3474 0 1 61659 24873 2538 15425 15434 29081 29081 0.1218561083902614 LPLVLPPPP 9 Unmodified _LPLVLPPPP_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS UPN47_class_I_Rep_2 3 471.79547119140625 2 471.804771 941.59499 NaN NaN NaN NaN NaN NaN NaN 59.75 1 63.023 62.523 63.523 3.2731 0 0 0 0.381 1 13931 13931 5.2307 0 1 24874 2538 15425 15434 29082 29082 0.1218561083902614 LPLVLPPPP 9 Unmodified _LPLVLPPPP_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.804771 941.59499 NaN NaN NaN NaN NaN NaN NaN 59.799 1 62.964 62.464 63.464 3.1651 0 0 0 0.381 1 13997 13997 5.2307 0 1 24875 2538 15425 15434 29083 29083 0.1218561083902614 LPLVLPPPP 9 Unmodified _LPLVLPPPP_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS UPN47_class_I_Rep_3 4 471.8050231933594 2 471.804771 941.59499 NaN NaN NaN NaN NaN NaN NaN 59.925 1 63.09 62.59 63.59 3.1651 0 0 0 0.381 1 14035 14035 5.2307 0 1 24876 2538 15425 15434 29084 29084 0.1218561083902614 LPLVLPPPP 9 Unmodified _LPLVLPPPP_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS UPN47_class_I_Rep_3 4 471.795654296875 2 471.804771 941.59499 NaN NaN NaN NaN NaN NaN NaN 59.954 1 63.119 62.619 63.619 3.1651 0 0 0 0.22893 1 14044 14044 14.582 0 1 24877 2538 15425 15434 29085 29085 0.1218561083902614 LPLVLYGSLS 10 Unmodified _LPLVLYGSLS_ 0 0 0 L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|165|1|anti-sense L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|165|1|anti-sense L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|165|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.3153076171875 2 531.3157 1060.61685 0.31573 0.00016775 0.14493 7.7004E-05 0.46066 0.00024476 531.3155986053188 59.92 0.72006 63.193 62.832 63.552 3.2731 72 43 2 0 0 0 0.54822 1 14067 14067 5.7319 0 1 199060 24878 14928 15426 15435 29086 29086 0.0889637079694694 LPLWFCGNYY 10 Unmodified _LPLWFCGNYY_ 0 0 0 ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 638.2964477539062 2 638.296985 1274.57942 0.044719 2.8544E-05 -0.5355 -0.00034181 -0.49078 -0.00031327 638.2965158893978 40.785 0.51848 44.156 43.982 44.5 3.3712 63 44 2 0 0 0 0.56033 1 8246 8246 3.5965 1.098 1 104470 24879 7755 15427 15436 29087 29087 -0.046890437403135365 LPLWMCYM 8 Unmodified _LPLWMCYM_ 0 0 0 REV__MER52A_dup326|chr4:51866831-51868397:-|1.0648767794827336|0.0890057315162517|3.58|151.0|45|2|anti-sense REV__MER52A_dup326|chr4:51866831-51868397:-|1.0648767794827336|0.0890057315162517|3.58|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_1 2 528.758056640625 2 528.739402 1055.46425 NaN NaN NaN NaN NaN NaN NaN 116.33 1 119.93 119.43 120.43 3.6036 0 0 0 0.40738 1 28803 28803 0.79363 0 1 + 24880 31420 15428 15437 29088 29088 -0.0612618746733915 LPLWPSSLA 9 Unmodified _LPLWPSSLA_ 0 0 0 ENST00000367558.5_1_1:182568870-182568942:-|nuORF ENST00000367558.5_1_1:182568870-182568942:-|nuORF ENST00000367558.5_1_1:182568870-182568942:-|nuORF MSMS UPN48_class_I_Rep_1 5 492.2796936035156 2 492.28166 982.548768 NaN NaN NaN NaN NaN NaN NaN 35.668 1 39.178 38.678 39.678 3.5101 0 0 0 0.38478 1 5863 5863 4.3292 1.7518 1 24881 6352 15429 15438 29089 29089 0.05679545936948216 LPLYGPIQSH 10 Unmodified _LPLYGPIQSH_ 0 0 0 REV__HERVL40-int_dup663|chr8:129932731-129932990:+|1.1501462297970395|0.003539818071999|8.34|151.0|17|2|anti-sense REV__HERVL40-int_dup663|chr8:129932731-129932990:+|1.1501462297970395|0.003539818071999|8.34|151.0|17|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 562.3350219726562 2 562.808574 1123.60259 0.40929 0.00023035 -3.4239 -0.001927 -3.0146 -0.0016966 563.3073340703949 46.749 0.078697 46.749 46.68 46.759 0 7 5 2 0 0 0 0.84575 1 9599 9599 1.4819 0.68827 1 65420 + 24882 23918 15430 15439 29090 29090 0.04573718368669688 LPMFGLLYSS 10 Unmodified _LPMFGLLYSS_ 0 0 0 L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|176|3|anti-sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|176|3|anti-sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|176|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2955932617188 2 564.293911 1126.57327 NaN NaN NaN NaN NaN NaN NaN 31.573 1 35.214 34.714 35.714 3.641 0 0 0 0.53105 1 4767 4767 1.8442 0.36234 1 24883 15474 15431 15440 29091 29091 0.01504438028155164 LPMKKPHL 8 Unmodified _LPMKKPHL_ 0 0 0 AluSp_dup17171|chr6:42956085-42956345:+|1.554751136310101|0.2092895351215914|2.89|151.0|8|3|sense AluSp_dup17171|chr6:42956085-42956345:+|1.554751136310101|0.2092895351215914|2.89|151.0|8|3|sense AluSp_dup17171|chr6:42956085-42956345:+|1.554751136310101|0.2092895351215914|2.89|151.0|8|3|sense MSMS UPN48_class_I_Rep_1 5 482.29266357421875 2 482.294048 962.573543 NaN NaN NaN NaN NaN NaN NaN 34.964 1 38.479 37.979 38.979 3.5144 0 0 0 0.40738 1 5659 5659 0.79363 0 1 24884 229 15432 15441 29092 29092 0.09075902538666014 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MSMS UPN46_class_I_Rep_3 1 584.8495483398438 2 584.348209 1166.68186 0.34736 0.00020298 0.28294 0.00016533 0.6303 0.00036832 584.3486043324044 33.737 0.052364 33.737 33.697 33.75 0 6 4 2 0 0 0 0.46434 1 5940 5940 4.3292 0.73274 1 57746 24885 5426 15433 15442 29093 29093 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-SECPEP UPN46_class_I_Rep_3 1 583.7940673828125 2 584.348209 1166.68186 0.12196 7.1266E-05 -0.30286 -0.00017698 -0.18091 -0.00010571 584.3477385620739 23.546 0.041691 23.546 23.517 23.558 0 4 2 2 0 0 0 0.12462 1 2966 2966 1.8442 0.36234 1 37342 24886 5426 15433 15442 29094 29094 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MSMS UPN47_class_I_Rep_1 2 584.8494262695312 2 584.348209 1166.68186 0.49867 0.00029139 -0.31886 -0.00018632 0.17981 0.00010507 584.3478730095438 110 0.25701 113.58 113.55 113.8 3.5836 47 37 2 0 0 0 0.48846 1 27132 27132 1.8442 0.19162 1 146290 24887 5426 15433 15442 29095 29095 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 584.348209 1166.68186 0.63472 0.0003709 -0.66266 -0.00038723 -0.027946 -1.633E-05 584.347715892284 110.11 0.3026 113.64 113.59 113.89 3.5307 -0.024852 -0.00018872 NaN 1.8442 66 44 2 NaN NaN NaN NaN 0 NaN NaN 0 149740 24888 5426 15433 15442 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MATCH UPN47_class_I_Rep_3 4 2 584.348209 1166.68186 0.50681 0.00029615 -0.40213 -0.00023498 0.10467 6.1167E-05 584.347763986236 110.09 0.16861 113.63 113.59 113.76 3.5347 -0.035086 0.00011577 NaN 1.8442 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 138620 24889 5426 15433 15442 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 584.348209 1166.68186 0.40642 0.00023749 0.27597 0.00016126 0.68239 0.00039875 584.3484629056541 110.14 0.11093 113.77 113.73 113.84 3.6326 0.10667 0.00090825 NaN 1.8442 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 231490 24890 5426 15433 15442 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 584.348209 1166.68186 0.48089 0.00028101 -1.2833 -0.00074988 -0.80238 -0.00046887 584.3472452324731 109.93 0.057388 113.6 113.57 113.63 3.6715 -0.057124 -0.00091402 NaN 1.8442 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 132260 24891 5426 15433 15442 0.10519086841804892 LPMKPRRNR 9 Unmodified _LPMKPRRNR_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 584.348209 1166.68186 0.49739 0.00029065 -0.67373 -0.00039369 -0.17635 -0.00010305 584.3478846022006 110.08 0.13589 113.75 113.69 113.82 3.67 0.090112 -0.00020165 NaN 1.8442 21 18 2 NaN NaN NaN NaN 0 NaN NaN 0 113660 24892 5426 15433 15442 0.10519086841804892 LPMKPRRNRA 10 Unmodified _LPMKPRRNRA_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MSMS UPN47_class_I_Rep_1 2 619.8701171875 2 619.866766 1237.71898 NaN NaN NaN NaN NaN NaN NaN 86.722 1 90.337 89.837 90.837 3.6153 0 0 0 0.53105 1 21665 21665 1.4819 0 1 24893 5426 15434 15443 29096 29096 0.10962758387586291 LPMWVLFW 8 Unmodified _LPMWVLFW_ 0 0 0 L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|271|2|anti-sense L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|271|2|anti-sense L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|271|2|anti-sense MSMS UPN48_class_I_Rep_2 6 546.291259765625 2 546.290974 1090.56739 NaN NaN NaN NaN NaN NaN NaN 113.7 1 117.36 116.86 117.86 3.663 0 0 0 0.40738 1 27146 27146 0.79363 0 1 24894 14892 15435 15444 29097 29097 0.025733843071520823 LPNKMIDRNK 10 Unmodified _LPNKMIDRNK_ 0 0 0 ENST00000440665.5_1_1:231658373-231663995:-|nuORF ENST00000440665.5_1_1:231658373-231663995:-|nuORF ENST00000440665.5_1_1:231658373-231663995:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 410.2317810058594 3 410.232535 1227.67578 -0.41255 -0.00016924 -0.97669 -0.00040067 -1.3892 -0.00056991 410.2320224444698 103.71 0.16705 107.24 107.21 107.38 3.5289 32 25 2 0 0 0 0.55335 1 25235 25235 5.0475 0.3316 1 23128000 24895 6774 15436 15445 29098 29098 0.07104523819634778 LPNNETPY 8 Unmodified _LPNNETPY_ 0 0 0 REV__MER41-int_dup1598|chr21:46521489-46522861:-|1.1425303636285142|0.0188000966968931|5.93|151.0|73|2|anti-sense REV__MER41-int_dup1598|chr21:46521489-46522861:-|1.1425303636285142|0.0188000966968931|5.93|151.0|73|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 474.28216552734375 2 474.227082 946.439611 0.093288 4.424E-05 -0.49959 -0.00023692 -0.4063 -0.00019268 474.22678764607 109.08 0.099167 112.72 112.69 112.79 3.6321 16 11 2 0 0 0 0.72333 1 26469 26469 0.69038 0 1 889040 + 24896 31290 15437 15446 29099 29099 -0.035750847531971885 LPNVILGYYG 10 Unmodified _LPNVILGYYG_ 0 0 0 Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense Charlie1a_dup983|chr2:210012193-210013288:+|1.774481822896067|0.1153933214753509|3.94|151.0|20|2|sense MSMS UPN47_class_I_Rep_1 2 554.80810546875 2 554.8055 1107.59645 NaN NaN NaN NaN NaN NaN NaN 38.7 1 42.365 41.865 42.865 3.6652 0 0 0 0.53105 1 7487 7487 1.6526 0.32309 1 24897 497 15438 15447 29100 29100 0.04695200137143729 LPPAIQRY 8 Unmodified _LPPAIQRY_ 0 0 0 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 MSMS UPN47_class_I_Rep_1 2 479.2773742675781 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 77.269 1 80.683 80.183 81.183 3.4149 0 0 0 0.40738 1 19163 19163 0.79363 0 1 24898 3446 15439 15448 29101 29101 0.06434081514032641 LPPGQGKPRV 10 Unmodified _LPPGQGKPRV_ 0 0 0 ENST00000375151.4_1_X:54470983-54471202:+|nuORF ENST00000375151.4_1_X:54470983-54471202:+|nuORF ENST00000375151.4_1_X:54470983-54471202:+|nuORF MSMS UPN47_class_I_Rep_3 4 524.8168334960938 2 524.816733 1047.61891 NaN NaN NaN NaN NaN NaN NaN 41.897 1 45.135 44.635 45.635 3.2372 0 0 0 0.53105 1 8543 8543 1.4819 0.68827 1 24899 6439 15440 15449 29102 29102 0.09700844325402613 LPPHPPKHL 9 Unmodified _LPPHPPKHL_ 0 0 0 AluJr_dup3774|chr1:112662115-112662326:-|1.8553943615613104|0.1016217694746476|4.19|151.0|15|3|anti-sense AluJr_dup3774|chr1:112662115-112662326:-|1.8553943615613104|0.1016217694746476|4.19|151.0|15|3|anti-sense AluJr_dup3774|chr1:112662115-112662326:-|1.8553943615613104|0.1016217694746476|4.19|151.0|15|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 518.3084716796875 2 518.308544 1034.60253 0.25761 0.00013352 0.52755 0.00027343 0.78515 0.00040695 518.3085038446775 109.34 1.5715 112.87 112.69 114.26 3.5307 359 219 3 0 0 0 0.46434 1 26713 26713 4.3292 0 1 18192000 24900 150 15441 15450 29103 29103 0.08661763159329894 LPPIFVGKA 9 Unmodified _LPPIFVGKA_ 0 0 0 REV__L1MA3_dup1332|chr3:15551342-15553256:-|1.1643233172161231|0.0426023782555416|4.77|150.0|46|3|sense REV__L1MA3_dup1332|chr3:15551342-15553256:-|1.1643233172161231|0.0426023782555416|4.77|150.0|46|3|sense MSMS UPN48_class_I_Rep_1 5 471.2947998046875 2 471.294571 940.574589 NaN NaN NaN NaN NaN NaN NaN 47.268 1 50.79 50.29 51.29 3.5219 0 0 0 0.39428 1 9322 9322 2.0598 1.2661 1 + 24901 24968 15442 15451 29104 29104 0.10192440179230289 LPPKVRHL 8 Unmodified _LPPKVRHL_ 0 0 0 REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF MSMS UPN48_class_I_Rep_1 5 480.77001953125 2 480.311087 958.60762 NaN NaN NaN NaN NaN NaN NaN 24.729 1 28.296 27.796 28.796 3.5667 0 0 0 0.40746 1 2772 2772 0.69038 0 1 + 24902 23051 15443 15452 29105 29105 0.12666067021950767 LPPLAQRR 8 Unmodified _LPPLAQRR_ 0 0 0 ENST00000550249.2_1_2:74728720-74730124:-|nuORF ENST00000550249.2_1_2:74728720-74730124:-|nuORF ENST00000550249.2_1_2:74728720-74730124:-|nuORF MSMS UPN47_class_I_Rep_2 3 475.8000183105469 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 111.65 1 115.17 114.67 115.67 3.5226 0 0 0 0.40746 1 27182 27182 0.69038 0 1 24903 7395 15444 15453 29106 29106 0.10532592499521343 LPPMPPKVL 9 Unmodified _LPPMPPKVL_ 0 0 0 AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 496.3041687011719 2 496.304081 990.59361 0.18561 9.2119E-05 0.016116 7.9985E-06 0.20173 0.00010012 496.3040560523815 87.654 0.30499 91.273 91.128 91.433 3.6187 47 31 2 0 0 0 0.12527 1 20987 20987 0 0 1 78484 24904 197 15445 15454 29107 29107 0.09793653478641318 LPPMPPKVL 9 Unmodified _LPPMPPKVL_ 0 0 0 AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 496.304081 990.59361 0.24172 0.00011997 -0.22299 -0.00011067 0.018731 9.2964E-06 496.3037142241214 87.869 0.085083 91.525 91.468 91.553 3.6563 0.12108 -0.00028691 NaN 0 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 33390 24905 197 15445 15454 0.09793653478641318 LPPMPPKVL 9 Unmodified _LPPMPPKVL_ 0 0 0 AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 496.304081 990.59361 0.27887 0.0001384 0.279 0.00013847 0.55787 0.00027687 496.3039909757179 87.621 0.041794 91.349 91.334 91.376 3.7279 -0.055039 0.00021137 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 81121 24906 197 15445 15454 0.09793653478641318 LPPMPPKVL 9 Unmodified _LPPMPPKVL_ 0 0 0 AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense AluJr4_dup18500|chr19:7388259-7388393:-|1.3627677476930724|0.0289936692443457|5.55|150.0|11|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 496.304081 990.59361 0.27053 0.00013426 0.17501 8.6858E-05 0.44554 0.00022112 496.30411800799806 87.679 0.063675 91.469 91.417 91.481 3.7905 0.065143 0.00010815 NaN 0 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 85976 24907 197 15445 15454 0.09793653478641318 LPPPYKVLWLG 11 Unmodified _LPPPYKVLWLG_ 0 0 0 L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|23|2|sense L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|23|2|sense L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 641.8829345703125 2 641.881542 1281.74853 0.74929 0.00048096 0.5065 0.00032511 1.2558 0.00080607 641.8818663779095 92.956 0.15825 92.956 92.899 93.057 0 23 15 2 0 0 0 0.66945 1 22510 22510 1.4819 0 1 4314300 24908 15450 15446 15455 29108 29108 0.11892600884698368 LPPRRLRIVL 10 Unmodified _LPPRRLRIVL_ 0 0 0 REV__ENST00000524653.1_1_1:179853135-179873887:+|nuORF REV__ENST00000524653.1_1_1:179853135-179873887:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 617.4212036132812 2 616.919324 1231.8241 0.42326 0.00026112 -0.75284 -0.00046444 -0.32957 -0.00020332 616.9184490139281 108.12 0.49741 111.75 111.43 111.93 3.6313 91 41 4 0 0 0 0.56309 1 26147 26147 1.6526 1.1943 1 3882900 + 24909 19438 15447 15456 29109 29109 0.21745622855632973 LPPRSQSSVL 10 Unmodified _LPPRSQSSVL_ 0 0 0 ENST00000342694.6_1_9:35792155-35792197:+|nuORF ENST00000342694.6_1_9:35792155-35792197:+|nuORF ENST00000342694.6_1_9:35792155-35792197:+|nuORF MSMS UPN47_class_I_Rep_2 3 542.3134155273438 2 542.31148 1082.60841 NaN NaN NaN NaN NaN NaN NaN 64.791 1 68.047 67.547 68.547 3.2556 0 0 0 0.53105 1 15460 15460 4.1895 0.90819 1 24910 6238 15448 15457 29110 29110 0.07040816880339662 LPPTITDQI 9 Unmodified _LPPTITDQI_ 0 0 0 ENSG00000213780|ENST00000259895|GTF2H4;ENST00000483318.5_1_6:30881079-30881757:+|nuORF;ENST00000477288.5_1_6:30880034-30881757:+|nuORF ENSG00000213780|ENST00000259895|GTF2H4 ENSG00000213780|ENST00000259895|GTF2H4 MULTI-MSMS UPN47_class_I_Rep_2 3 499.2823181152344 2 499.281857 996.549162 0.055896 2.7908E-05 0.040946 2.0444E-05 0.096842 4.8352E-05 499.2817865990683 46.425 1.3937 49.776 49.255 50.648 3.3515 219 96 4 0 0 0 0.48846 1 9786 9786 1.8442 0 1 1289900 24911 5602 15449 15458 29111 29111 0.050749208661500234 LPPWAAFW 8 Unmodified _LPPWAAFW_ 0 0 0 L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|23|3|anti-sense L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|23|3|anti-sense L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 494.2592468261719 2 494.257988 986.501424 NaN NaN NaN NaN NaN NaN NaN 105.83 1 109.46 108.96 109.96 3.6277 0 0 0 0.40738 1 25499 25499 0.79363 0.10326 1 24912 13151 15450 15459 29112 29112 0.007633114566033328 LPPWDPLFY 9 Unmodified _LPPWDPLFY_ 0 0 0 L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|77|2|anti-sense L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|77|2|anti-sense L1MA4A_dup4449|chr11:88287406-88288871:-|1.047752110058152|0.0936285715200796|3.48|151.0|77|2|anti-sense MSMS UPN47_class_I_Rep_2 3 574.2953491210938 2 574.294768 1146.57498 NaN NaN NaN NaN NaN NaN NaN 28.966 1 32.458 31.958 32.958 3.4923 0 0 0 0.39326 1 4572 4572 2.3027 0.65011 1 24913 9817 15451 15460 29113 29113 0.007558151084140263 LPQFTLVRQ 9 Unmodified _LPQFTLVRQ_ 0 0 0 REV__ENSG00000142677|ENST00000270800|IL22RA1 REV__ENSG00000142677|ENST00000270800|IL22RA1 MSMS UPN47_class_I_Rep_3 4 551.3248901367188 2 551.324391 1100.63423 NaN NaN NaN NaN NaN NaN NaN 62.903 1 66.073 65.573 66.573 3.1698 0 0 0 0.25702 1 14946 14946 13.042 0.80181 1 + 24914 19413 15452 15461 29114 29114 0.08793711122621062 LPQIRTNFL 9 Unmodified _LPQIRTNFL_ 0 0 0 nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 MULTI-MSMS UPN47_class_I_Rep_1 2 551.3251953125 2 551.324391 1100.63423 0.41938 0.00023121 -0.17139 -9.4492E-05 0.24799 0.00013672 551.3241822023388 62.476 0.72052 65.845 65.521 66.242 3.3681 62 45 2 0 0 0 0.10225 3 14709 14687;14709;14732 33.445 9.4243 1 110190 24915 865 15453 15462 29115;29116;29117 29116 0.08793711122621062 LPQIRTNFL 9 Unmodified _LPQIRTNFL_ 0 0 0 nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 MULTI-MSMS UPN47_class_I_Rep_2 3 551.3243408203125 2 551.324391 1100.63423 0.41903 0.00023102 -0.3861 -0.00021286 0.03293 1.8155E-05 551.3240501750043 62.784 0.77387 66.04 65.764 66.537 3.2558 65 50 2 0 0 0 0.39745 1 14810 14810 8.1555 1.4324 1 137290 24916 865 15453 15462 29118 29118 0.08793711122621062 LPQKASYQ 8 Unmodified _LPQKASYQ_ 0 0 0 L1M4b_dup548|chr2:148297186-148298612:-|1.015092477824994|0.0104148041967425|6.61|150.0|39|3|sense L1M4b_dup548|chr2:148297186-148298612:-|1.015092477824994|0.0104148041967425|6.61|150.0|39|3|sense L1M4b_dup548|chr2:148297186-148298612:-|1.015092477824994|0.0104148041967425|6.61|150.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 467.75311279296875 2 467.753267 933.491981 0.052623 2.4614E-05 -0.41554 -0.00019437 -0.36292 -0.00016976 467.7530162886969 50.492 0.87562 53.835 53.481 54.356 3.3431 102 45 3 0 0 0 0.82752 1 11153 11153 8.5933 0 1 335990 24917 9028 15454 15463 29119 29119 0.022574983804133808 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MSMS UPN47_class_I_Rep_1 2 504.8085632324219 2 504.808042 1007.60153 0.32552 0.00016433 1.159 0.00058507 1.4845 0.0007494 504.8084904717463 110.47 0.26221 114.06 113.88 114.14 3.5835 47 34 2 0 0 0 0.46434 1 27239 27239 4.3292 2.0265 1 431480 24918 980 15455 15464 29120 29120 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MSMS UPN47_class_I_Rep_1 2 504.80877685546875 2 504.808042 1007.60153 0.32621 0.00016467 1.3381 0.00067546 1.6643 0.00084014 504.8085693910348 112.6 0.12959 116.17 116.08 116.21 3.572 19 11 4 0 0 0 0.46434 1 27752 27752 4.3292 0.38484 1 2111900 24919 980 15455 15464 29121 29121 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-SECPEP UPN47_class_I_Rep_1 2 504.8087463378906 2 504.808042 1007.60153 0.32558 0.00016435 1.4622 0.00073814 1.7878 0.0009025 504.8086136888936 110.66 0.12746 114.24 114.14 114.27 3.5835 30 15 2 0 0 0 0.12281 1 27283 27283 4.3292 2.2695 1 378700 24920 980 15455 15464 29122 29122 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-SECPEP UPN47_class_I_Rep_2 3 504.80926513671875 2 504.808042 1007.60153 0.37212 0.00018785 1.4521 0.00073303 1.8242 0.00092088 504.8086233825803 110.82 0.19334 114.35 114.22 114.41 3.5271 37 22 2 0 0 0 0.12281 1 26980 26980 4.3292 4.3292 1 548150 24921 980 15455 15464 29123 29123 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN46_class_I_Rep_3 1 2 504.808042 1007.60153 0.3141 0.00015856 1.2775 0.00064487 1.5916 0.00080343 504.8087444298085 115.99 0.045975 115.99 115.98 116.03 0 -0.090633 -4.8053E-05 NaN 4.3292 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 155010 24922 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN46_class_I_Rep_3 1 2 504.808042 1007.60153 0.314 0.00015851 -0.71057 -0.0003587 -0.39656 -0.00020019 504.80750759196155 113.79 0.052376 113.79 113.77 113.83 0 -0.093791 -0.0020798 NaN 4.3292 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 36901 24923 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN46_class_I_Rep_3 1 2 504.808042 1007.60153 0.31406 0.00015854 2.0299 0.0010247 2.344 0.0011833 504.8086211701263 113.85 0.026962 113.85 113.84 113.87 0 -0.22596 0.00067186 NaN 4.3292 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 52831 24924 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN47_class_I_Rep_1 2 2 504.808042 1007.60153 0.32565 0.00016439 1.4377 0.00072578 1.7634 0.00089017 504.80863387558963 110.73 0.1694 114.31 114.27 114.44 3.5835 -0.0036045 -7.4325E-06 NaN 4.3292 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 939460 24925 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 504.808042 1007.60153 0.37197 0.00018777 1.3939 0.00070364 1.7659 0.00089142 504.80863822686246 110.18 0.43098 113.71 113.59 114.02 3.5271 -0.17837 4.4857E-05 NaN 4.3292 94 62 2 NaN NaN NaN NaN 0 NaN NaN 0 213570 24926 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN47_class_I_Rep_3 4 2 504.808042 1007.60153 0.30831 0.00015564 1.6252 0.00082041 1.9335 0.00097605 504.80876512872305 110.46 0.1311 113.99 113.9 114.03 3.529 0.1035 0.00027839 NaN 4.3292 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 79537 24927 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN47_class_I_Rep_3 4 2 504.808042 1007.60153 0.3083 0.00015563 1.304 0.00065825 1.6123 0.00081388 504.8085163579422 110.54 0.29234 114.07 114.02 114.31 3.529 -0.010762 -6.1075E-05 NaN 4.3292 53 38 2 NaN NaN NaN NaN 0 NaN NaN 0 127800 24928 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN48_class_I_Rep_2 6 2 504.808042 1007.60153 0.30348 0.0001532 1.3912 0.0007023 1.6947 0.0008555 504.8085592740185 110.49 0.093262 114.16 114.12 114.21 3.669 0.076666 2.7019E-05 NaN 4.3292 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 106470 24929 980 15455 15464 0.09803503999751229 LPQPKALLE 9 Unmodified _LPQPKALLE_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA;nc|ENSG00000063169|Q9NZM4-2|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MULTI-MATCH UPN48_class_I_Rep_2 6 2 504.808042 1007.60153 0.30346 0.00015319 1.4551 0.00073453 1.7585 0.00088772 504.80855318490404 110.61 0.15128 114.28 114.22 114.37 3.669 -0.030924 1.0073E-05 NaN 4.3292 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 72480 24930 980 15455 15464 0.09803503999751229 LPQQPYGLA 9 Unmodified _LPQQPYGLA_ 0 0 0 REV__ENST00000566468.1_1_15:74883640-74883901:+|nuORF REV__ENST00000566468.1_1_15:74883640-74883901:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.7689208984375 2 493.768917 985.523281 0.34705 0.00017136 -0.44328 -0.00021888 -0.09623 -4.7515E-05 493.76859268988915 54.123 0.70198 57.441 57.108 57.81 3.3187 68 39 2 0 0 0 0.40174 1 12205 12205 7.9102 0.62092 1 179500 + 24931 23065 15456 15465 29124 29124 0.0299407141451411 LPQRKVGLW 9 Unmodified _LPQRKVGLW_ 0 0 0 REV__ENSG00000144452|ENST00000272895|ABCA12 REV__ENSG00000144452|ENST00000272895|ABCA12 MULTI-MSMS UPN46_class_I_Rep_3 1 548.8349609375 2 548.834926 1095.6553 0.11889 6.5251E-05 0.45104 0.00024754 0.56993 0.0003128 548.8350894919363 29.322 0.093946 29.322 29.281 29.375 0 9 5 2 0 0 0 0.50015 1 4635 4635 0.6015 0 1 254880 + 24932 19486 15457 15466 29125 29125 0.11129721222141598 LPRALMRSTTK 11 Unmodified _LPRALMRSTTK_ 0 0 0 nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE nc|ENSG00000211891|P01854-1|IGHE nc|ENSG00000211891|P01854-1|IGHE MSMS UPN48_class_I_Rep_2 6 637.3731079101562 2 637.374089 1272.73363 NaN NaN NaN NaN NaN NaN NaN 102.22 1 105.95 105.45 106.45 3.7252 0 0 0 0.38417 1 24220 24220 2.086 0.43339 1 24933 16818 15458 15467 29126 29126 0.10816785745032576 LPRARHHDCT 10 Unmodified _LPRARHHDCT_ 0 0 0 L1M5_dup41440|chr13:49173249-49173732:+|2.057470671631095|0.4494513165602439|2.19|151.0|26|2|anti-sense L1M5_dup41440|chr13:49173249-49173732:+|2.057470671631095|0.4494513165602439|2.19|151.0|26|2|anti-sense L1M5_dup41440|chr13:49173249-49173732:+|2.057470671631095|0.4494513165602439|2.19|151.0|26|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 603.3013305664062 2 603.301456 1204.58836 -0.057614 -3.4759E-05 -0.77632 -0.00046836 -0.83394 -0.00050312 603.3009486168731 25.657 0.59046 29.419 29.132 29.723 3.7624 97 54 3 0 0 0 0.56309 1 3620 3620 1.6526 1.0511 1 133250 24934 9167 15459 15468 29127 29127 -0.0057525733127477 LPRDIKNVKE 10 Unmodified _LPRDIKNVKE_ 0 0 0 REV__L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|138|3|sense REV__L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|138|3|sense MSMS UPN46_class_I_Rep_3 1 606.3613891601562 2 606.358962 1210.70337 NaN NaN NaN NaN NaN NaN NaN 35.215 1 35.215 34.715 35.715 0 0 0 0 0.53105 1 6384 6384 1.1933 0 1 + 24935 24291 15460 15469 29128 29128 0.10644750351502807 LPRDIRVL 8 Unmodified _LPRDIRVL_ 0 0 0 L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|67|2|anti-sense L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|67|2|anti-sense L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|67|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.31396484375 2 491.313826 980.613099 -0.31931 -0.00015688 0.33677 0.00016546 0.017461 8.5787E-06 491.3139001186543 23.784 1.0582 27.513 27.128 28.186 3.7298 180 88 3 0 0 0 0.82752 1 2944 2944 7.2892 0 1 331450 24936 13620 15461 15470 29129 29129 0.1220174581376341 LPRDKFLKEK 10 Unmodified _LPRDKFLKEK_ 0 0 0 ENST00000420252.1_1_7:12511002-12511287:+|nuORF ENST00000420252.1_1_7:12511002-12511287:+|nuORF ENST00000420252.1_1_7:12511002-12511287:+|nuORF MSMS UPN48_class_I_Rep_2 6 637.3723754882812 2 637.38498 1272.75541 NaN NaN NaN NaN NaN NaN NaN 102.07 1 105.79 105.29 106.29 3.7252 0 0 0 0.53105 1 24191 24191 2.4985 1.0166 1 24937 6676 15462 15471 29130 29130 0.12993913765262732 LPRDLAVR 8 Unmodified _LPRDLAVR_ 0 0 0 REV__nc|ENSG00000161013|Q9UQ53-3|MGAT4B REV__nc|ENSG00000161013|Q9UQ53-3|MGAT4B MULTI-MSMS UPN47_class_I_Rep_2 3 470.2901916503906 2 470.290351 938.566149 -0.33238 -0.00015631 -0.16377 -7.702E-05 -0.49615 -0.00023333 470.2901136904635 22.522 0.8254 25.966 25.586 26.411 3.4447 148 79 2 0 0 0 0.82752 1 2685 2685 28.487 0 1 202350 + 24938 32030 15463 15472 29131 29131 0.09440886262609638 LPRFGPGGAG 10 Unmodified _LPRFGPGGAG_ 0 0 0 REV__nc|ENSG00000140479|P29122-4|PCSK6 REV__nc|ENSG00000140479|P29122-4|PCSK6 MSMS UPN48_class_I_Rep_2 6 464.75506591796875 2 464.753601 927.49265 NaN NaN NaN NaN NaN NaN NaN 74.99 1 78.58 78.08 79.08 3.59 0 0 0 0.53105 1 17668 17668 3.5965 0.31518 1 + 24939 31996 15464 15473 29132 29132 0.026003378201494343 LPRFPGRHL 9 Unmodified _LPRFPGRHL_ 0 0 0 ENST00000448759.1_1_1:43352460-43353038:-|nuORF ENST00000448759.1_1_1:43352460-43353038:-|nuORF ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS UPN47_class_I_Rep_2 3 546.8260498046875 2 546.824892 1091.63523 NaN NaN NaN NaN NaN NaN NaN 14.101 1 17.488 16.988 17.988 3.3871 0 0 0 0.39518 1 490 490 1.8442 0.36234 1 24940 6801 15465 15474 29133 29133 0.09307970282179667 LPRFRGSL 8 Unmodified _LPRFRGSL_ 0 0 0 REV__L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|131|2|anti-sense REV__L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|131|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 473.31036376953125 2 473.285069 944.555585 -0.13588 -6.431E-05 -1.5655 -0.00074095 -1.7014 -0.00080526 473.28428636858956 45.12 0.55824 48.476 48.191 48.749 3.3556 39 31 2 0 0 0 0.72333 1 9460 9460 7.9102 1.7044 1 55745 + 24941 30450 15466 15475 29134 29134 0.08108903608183482 LPRKGGGYD 9 Unmodified _LPRKGGGYD_ 0 0 0 REV__ENST00000554233.1_1_14:76524934-76525784:+|nuORF REV__ENST00000554233.1_1_14:76524934-76525784:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 481.7567443847656 2 481.756341 961.498129 0.25714 0.00012388 -0.29255 -0.00014094 -0.035403 -1.7055E-05 481.75617008092195 51.553 0.99009 54.891 54.464 55.454 3.3386 106 49 3 0 0 0 0.46869 1 11532 11532 3.9444 1.3669 1 416250 + 24942 22979 15467 15476 29135 29135 0.015840166119460264 LPRLVPRDR 9 Unmodified _LPRLVPRDR_ 0 0 0 REV__L1MA4A_dup164|chr1:84223669-84225982:-|1.4859987955154208|0.0528709410785276|4.81|151.0|83|1|anti-sense REV__L1MA4A_dup164|chr1:84223669-84225982:-|1.4859987955154208|0.0528709410785276|4.81|151.0|83|1|anti-sense MSMS UPN47_class_I_Rep_2 3 561.3513793945312 2 561.348732 1120.68291 NaN NaN NaN NaN NaN NaN NaN 107.32 1 110.86 110.36 111.36 3.5345 0 0 0 0.38478 1 25965 25965 4.3292 0 1 + 24943 25240 15468 15477 29136 29136 0.12739624482355794 LPRLVRLVRLS 11 Unmodified _LPRLVRLVRLS_ 0 0 0 REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__ENSG00000148408|ENST00000371372|CACNA1B REV__ENSG00000148408|ENST00000371372|CACNA1B MSMS UPN47_class_I_Rep_3 4 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 60.995 1 64.16 63.66 64.66 3.1651 0 0 0 0.38417 1 14358 14358 0.40827 0.24894 1 + 24944 19589;19392 15469 15478 29137 29137 0.22417277055842533 LPRLYDSA 8 Unmodified _LPRLYDSA_ 0 0 0 REV__ENSG00000198018|ENST00000370489|ENTPD7 REV__ENSG00000198018|ENST00000370489|ENTPD7 MULTI-MSMS UPN47_class_I_Rep_2 3 467.75311279296875 2 467.753267 933.491981 0.052623 2.4614E-05 -0.41554 -0.00019437 -0.36292 -0.00016976 467.7530162886969 50.492 0.87562 53.835 53.481 54.356 3.3431 102 45 3 0 0 0 0.82752 1 11100 11100 8.5933 0 1 335990 + 24945 21106 15470 15479 29138 29138 0.022574983804133808 LPRMCLQY 8 Unmodified _LPRMCLQY_ 0 0 0 nc|ENSG00000066336|P17947-2|SPI1;ENSG00000066336|ENST00000378538|SPI1 nc|ENSG00000066336|P17947-2|SPI1 nc|ENSG00000066336|P17947-2|SPI1 MSMS UPN48_class_I_Rep_3 7 512.2591552734375 2 512.259348 1022.50414 NaN NaN NaN NaN NaN NaN NaN 43.687 1 47.325 46.825 47.825 3.6385 0 0 0 0.40404 1 8160 8160 5.2307 0 1 24946 1020 15471 15480 29139 29139 -0.0062092447241184345 LPRPAANRKP 10 Unmodified _LPRPAANRKP_ 0 0 0 REV__ENST00000591231.5_1_19:34112864-34158706:+|nuORF REV__ENST00000591231.5_1_19:34112864-34158706:+|nuORF MSMS UPN48_class_I_Rep_2 6 560.3395385742188 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 79.709 1 83.342 82.842 83.842 3.6331 0 0 0 0.53105 1 18947 18947 3.2813 0.97858 1 + 24947 22319 15472 15481 29140 29140 0.11267337965318802 LPRPAANRKP 10 Unmodified _LPRPAANRKP_ 0 0 0 REV__ENST00000591231.5_1_19:34112864-34158706:+|nuORF REV__ENST00000591231.5_1_19:34112864-34158706:+|nuORF MSMS UPN48_class_I_Rep_3 7 560.340087890625 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 79.557 1 83.2 82.7 83.7 3.6423 0 0 0 0.53105 1 18866 18866 3.5965 1.5367 1 + 24948 22319 15472 15481 29141 29141 0.11267337965318802 LPRPFRMLQVP 11 Unmodified _LPRPFRMLQVP_ 0 0 0 REV__nc|ENSG00000163138|Q8N7B6-4|PACRGL REV__nc|ENSG00000163138|Q8N7B6-4|PACRGL MULTI-MSMS UPN47_class_I_Rep_2 3 451.9333190917969 3 451.932309 1352.7751 0.030098 1.3602E-05 0.33508 0.00015143 0.36518 0.00016504 451.9325116371917 92.183 0.18208 95.649 95.513 95.696 3.4652 45 25 2 0 0 0 0.6724 1 22787 22787 1.2148 0.4383 1 261210 + 24949 32034 15473 15482 29142 29142 0.112819665043844 LPRQKYIIH 9 Unmodified _LPRQKYIIH_ 0 0 0 REV__L1MB2_dup6066|chr12:69544715-69545486:+|1.6884153649291482|0.0237816780422143|6.15|151.0|48|2|anti-sense REV__L1MB2_dup6066|chr12:69544715-69545486:+|1.6884153649291482|0.0237816780422143|6.15|151.0|48|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3558959960938 2 584.353483 1166.69241 0.52544 0.00030704 4.4582 0.0026052 4.9836 0.0029122 584.3556749527024 87.471 0.073051 87.471 87.402 87.475 0 6 5 2 0 0 0 0.48643 1 20948 20948 2.0598 0.21551 1 89318 + 24950 25759 15474 15483 29143 29143 0.11573392767877522 LPRQKYIIH 9 Unmodified _LPRQKYIIH_ 0 0 0 REV__L1MB2_dup6066|chr12:69544715-69545486:+|1.6884153649291482|0.0237816780422143|6.15|151.0|48|2|anti-sense REV__L1MB2_dup6066|chr12:69544715-69545486:+|1.6884153649291482|0.0237816780422143|6.15|151.0|48|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 584.353483 1166.69241 0.52544 0.00030704 4.4582 0.0026052 4.9836 0.0029122 584.3556749527024 87.471 0.073051 87.471 87.402 87.475 0 0.16399 -0.00082114 NaN 2.0598 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 89318 + 24951 25759 15474 15483 0.11573392767877522 LPRRALAL 8 Unmodified _LPRRALAL_ 0 0 0 LTR12C_dup2632|chr22:39357358-39358791:+|2.614387829747835|0.0512074134986327|5.67|151.0|67|3|anti-sense LTR12C_dup2632|chr22:39357358-39358791:+|2.614387829747835|0.0512074134986327|5.67|151.0|67|3|anti-sense LTR12C_dup2632|chr22:39357358-39358791:+|2.614387829747835|0.0512074134986327|5.67|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_2 6 455.3023376464844 2 455.303262 908.59197 NaN NaN NaN NaN NaN NaN NaN 42.464 1 46.222 45.722 46.722 3.7579 0 0 0 0.40738 1 7864 7864 0.79363 0 1 24952 15548 15475 15484 29144 29144 0.1340178050486429 LPRRQPTVHF 10 Unmodified _LPRRQPTVHF_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MULTI-MSMS UPN48_class_I_Rep_2 6 417.92047119140625 3 417.575401 1249.70437 0.010069 4.2045E-06 -0.1512 -6.3139E-05 -0.14114 -5.8935E-05 417.5752336417595 43.295 1.0025 47.057 46.516 47.518 3.7617 124 79 2 0 0 0 0.56034 1 8033 8033 3.5871 0 1 148540 24953 1420 15476 15485 29145 29145 0.08951009511042685 LPRRQQLLLE 10 Unmodified _LPRRQQLLLE_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MULTI-MSMS UPN48_class_I_Rep_2 6 633.3870239257812 2 633.388054 1264.76155 0.49525 0.00031368 -1.5051 -0.00095331 -1.0099 -0.00063963 633.3869236473918 85.529 0.28807 89.235 89.131 89.419 3.7058 46 34 2 0 0 0 0.56107 1 20345 20345 5.7319 4.4023 1 106210 24954 3783 15477 15486 29146 29146 0.13976431996820793 LPRRQQLLLE 10 Unmodified _LPRRQQLLLE_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MSMS UPN48_class_I_Rep_2 6 633.3889770507812 2 633.388054 1264.76155 NaN NaN NaN NaN NaN NaN NaN 86.091 1 89.797 89.297 90.297 3.7058 0 0 0 0.53105 1 20496 20496 5.7319 2.9967 1 24955 3783 15477 15486 29147 29147 0.13976431996820793 LPRRQQLLLE 10 Unmodified _LPRRQQLLLE_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MSMS UPN48_class_I_Rep_2 6 633.3862915039062 2 633.388054 1264.76155 NaN NaN NaN NaN NaN NaN NaN 86.192 1 89.898 89.398 90.398 3.7058 0 0 0 0.53105 1 20523 20523 5.7319 0.43497 1 24956 3783 15477 15486 29148 29148 0.13976431996820793 LPRRQQLLLE 10 Unmodified _LPRRQQLLLE_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MULTI-MSMS UPN48_class_I_Rep_3 7 633.3671264648438 2 633.388054 1264.76155 0.63946 0.00040503 -1.3143 -0.00083249 -0.67488 -0.00042746 633.3870418227957 85.933 0.30302 89.703 89.479 89.782 3.7701 49 34 2 0 0 0 0.56107 2 20344 20344;20382 5.7319 5.7319 1 140280 24957 3783 15477 15486 29149;29150 29149 0.13976431996820793 LPRSFHEVFE 10 Unmodified _LPRSFHEVFE_ 0 0 0 Charlie1_dup1159|chr10:26762597-26762802:-|1.108610623881304|0.1037260428104473|3.42|148.0|2|1|sense Charlie1_dup1159|chr10:26762597-26762802:-|1.108610623881304|0.1037260428104473|3.42|148.0|2|1|sense Charlie1_dup1159|chr10:26762597-26762802:-|1.108610623881304|0.1037260428104473|3.42|148.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 630.822509765625 2 630.822212 1259.62987 0.47754 0.00030124 0.053096 3.3494E-05 0.53063 0.00033474 630.8221802146693 52.402 0.19657 56 55.917 56.113 3.5979 29 19 2 0 0 0 0.55448 1 10814 10814 4.897 4.897 1 114230 24958 430 15478 15487 29151 29151 0.010442019090305621 LPRVLMMRK 9 Unmodified _LPRVLMMRK_ 0 0 0 REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|70|3|sense REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|70|3|sense MSMS UPN48_class_I_Rep_1 5 572.3464965820312 2 572.346289 1142.67802 NaN NaN NaN NaN NaN NaN NaN 68.287 1 71.738 71.238 72.238 3.4517 0 0 0 0.39518 1 15757 15757 1.8442 0.19162 1 + 24959 25768 15479 15488 29152 29152 0.11239281023745207 LPRVLMMRK 9 Unmodified _LPRVLMMRK_ 0 0 0 REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|70|3|sense REV__L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|70|3|sense MSMS UPN48_class_I_Rep_2 6 572.3456420898438 2 572.346289 1142.67802 NaN NaN NaN NaN NaN NaN NaN 68.173 1 71.682 71.182 72.182 3.5083 0 0 0 0.39518 1 15705 15705 1.8442 0 1 + 24960 25768 15479 15488 29153 29153 0.11239281023745207 LPRVVKQFIR 10 Unmodified _LPRVVKQFIR_ 0 0 0 MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|37|3|sense MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|37|3|sense MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 628.4057006835938 2 628.403507 1254.79246 NaN NaN NaN NaN NaN NaN NaN 59.573 1 59.573 59.073 60.073 0 0 0 0 0.53105 1 13180 13180 0.40072 0 1 24961 15947 15480 15489 29154 29154 0.175256301016816 LPRWGLMHP 9 Unmodified _LPRWGLMHP_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS UPN47_class_I_Rep_3 4 553.7974853515625 2 553.800029 1105.5855 NaN NaN NaN NaN NaN NaN NaN 38.613 1 41.855 41.355 42.355 3.2414 0 0 0 0.39326 1 7538 7538 2.3027 0.24298 1 + 24962 18664 15481 15490 29155 29155 0.0369351928186461 LPRYYHLAL 9 Unmodified _LPRYYHLAL_ 0 0 0 nc|ENSG00000141644|Q9UIS9-10|MBD1 nc|ENSG00000141644|Q9UIS9-10|MBD1 nc|ENSG00000141644|Q9UIS9-10|MBD1 MSMS UPN47_class_I_Rep_3 4 573.327880859375 2 573.326934 1144.63931 NaN NaN NaN NaN NaN NaN NaN 89.24 1 92.633 92.133 93.133 3.3931 0 0 0 0.39326 1 22376 22376 2.3027 0.4585 1 24963 16699 15482 15491 29156 29156 0.07278014985240588 LPSDFSSHAVN 11 Unmodified _LPSDFSSHAVN_ 0 0 0 Tigger17a_dup1910|chr16:23878135-23878750:-|2.865097624872405|0.0059170397219605|8.92|151.0|3|1|sense Tigger17a_dup1910|chr16:23878135-23878750:-|2.865097624872405|0.0059170397219605|8.92|151.0|3|1|sense Tigger17a_dup1910|chr16:23878135-23878750:-|2.865097624872405|0.0059170397219605|8.92|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 587.27978515625 2 587.280377 1172.5462 -0.2124 -0.00012474 0.22656 0.00013306 0.014165 8.3186E-06 587.280382725925 28.097 0.53495 31.431 31.117 31.652 3.3337 82 44 2 0 0 0 0.67264 1 4302 4302 1.1933 0.50296 1 119420 24964 33254 15483 15492 29157 29157 -0.03316954258639271 LPSDPGLSRN 10 Unmodified _LPSDPGLSRN_ 0 0 0 L1M1_dup8928|chr18:57712078-57713145:+|2.1125396027482277|0.1379233022710392|3.94|151.0|56|3|anti-sense L1M1_dup8928|chr18:57712078-57713145:+|2.1125396027482277|0.1379233022710392|3.94|151.0|56|3|anti-sense L1M1_dup8928|chr18:57712078-57713145:+|2.1125396027482277|0.1379233022710392|3.94|151.0|56|3|anti-sense MSMS UPN48_class_I_Rep_3 7 528.2786865234375 2 528.277638 1054.54072 NaN NaN NaN NaN NaN NaN NaN 34.435 1 38.114 37.614 38.614 3.6797 0 0 0 0.53105 1 5471 5471 3.2813 0.54611 1 24965 8645 15484 15493 29158 29158 0.01563366949540068 LPSFATGASH 10 Unmodified _LPSFATGASH_ 0 0 0 REV__ENST00000564629.1_1_16:31470274-31471003:-|nuORF REV__ENST00000564629.1_1_16:31470274-31471003:-|nuORF MSMS UPN48_class_I_Rep_2 6 494.2501525878906 2 494.248349 986.482145 NaN NaN NaN NaN NaN NaN NaN 61.442 1 64.916 64.416 65.416 3.4738 0 0 0 0.53105 1 13649 13649 6.2058 2.6093 1 + 24966 23055 15485 15494 29159 29159 -0.01163689624968356 LPSQKTASL 9 Unmodified _LPSQKTASL_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MSMS UPN47_class_I_Rep_2 3 472.7735290527344 2 472.7742 943.533846 -0.30539 -0.00014438 -0.18971 -8.9691E-05 -0.4951 -0.00023407 472.7739465225473 30.116 0.43063 33.598 33.377 33.807 3.4821 60 36 2 0 0 0 0.33908 1 4893 4893 11.495 2.1473 1 57339 24967 3860 15486 15495 29160 29160 0.059820540689429436 LPSQKTASL 9 Unmodified _LPSQKTASL_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 472.7742 943.533846 -0.33672 -0.00015919 -0.26202 -0.00012388 -0.59874 -0.00028307 472.77381565365005 30.062 0.4794 33.807 33.531 34.01 3.7449 0.11109 -0.00018236 NaN 11.495 49 33 2 NaN NaN NaN NaN 0 NaN NaN 0 90769 24968 3860 15486 15495 0.059820540689429436 LPSQKTASL 9 Unmodified _LPSQKTASL_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 472.7742 943.533846 -0.61875 -0.00029253 0.13165 6.2241E-05 -0.4871 -0.00023029 472.77407084917036 30.371 0.54165 33.682 33.436 33.977 3.3116 -0.013377 0.00018987 NaN 11.495 74 43 2 NaN NaN NaN NaN 0 NaN NaN 0 64949 24969 3860 15486 15495 0.059820540689429436 LPSRAEVY 8 Unmodified _LPSRAEVY_ 0 0 0 MLT1H_dup9792|chr22:21613604-21614021:-|1.6748875731716508|0.3366557187290009|2.31|151.0|1|1|sense MLT1H_dup9792|chr22:21613604-21614021:-|1.6748875731716508|0.3366557187290009|2.31|151.0|1|1|sense MLT1H_dup9792|chr22:21613604-21614021:-|1.6748875731716508|0.3366557187290009|2.31|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 467.7528991699219 2 467.753267 933.491981 0.052623 2.4614E-05 -0.41554 -0.00019437 -0.36292 -0.00016976 467.7530162886969 50.492 0.87562 53.835 53.481 54.356 3.3431 102 45 3 0 0 0 0.82752 1 11055 11055 1.8442 1.1539 1 335990 24970 16430 15487 15496 29161 29161 0.022574983804133808 LPSRKLVAL 9 Unmodified _LPSRKLVAL_ 0 0 0 nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2 nc|ENSG00000128789|Q969U7-2|PSMG2 nc|ENSG00000128789|Q969U7-2|PSMG2 MULTI-MSMS UPN47_class_I_Rep_1 2 498.83160400390625 2 498.831852 995.649151 -0.23569 -0.00011757 0.20054 0.00010004 -0.035147 -1.7533E-05 498.8318610367307 40.027 0.89835 43.694 43.208 44.107 3.6668 158 66 3 0 0 0 0.12096 4 7855 7811;7855;7895;7933 29.841 29.841 1 425020 24971 2601 15488 15497 29162;29163;29164;29165 29163 0.15115202990614307 LPSRKLVAL 9 Unmodified _LPSRKLVAL_ 0 0 0 nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2 nc|ENSG00000128789|Q969U7-2|PSMG2 nc|ENSG00000128789|Q969U7-2|PSMG2 MULTI-MSMS UPN47_class_I_Rep_2 3 498.83154296875 2 498.831852 995.649151 -0.16827 -8.3937E-05 0.20366 0.00010159 0.035393 1.7655E-05 498.8318651982307 40.453 0.96758 43.824 43.314 44.281 3.3712 147 66 3 0 0 0 0.062142 3 8047 8047;8084;8170 43.772 14.691 1 299970 24972 2601 15488 15497 29166;29167;29168 29166 0.15115202990614307 LPSRKLVAL 9 Unmodified _LPSRKLVAL_ 0 0 0 nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2 nc|ENSG00000128789|Q969U7-2|PSMG2 nc|ENSG00000128789|Q969U7-2|PSMG2 MULTI-MSMS UPN47_class_I_Rep_3 4 498.83172607421875 2 498.831852 995.649151 -0.22133 -0.00011041 0.21805 0.00010877 -0.0032865 -1.6394E-06 498.83189095768756 40.791 0.95873 44.028 43.426 44.384 3.2372 133 61 3 0 0 0 0.088679 4 8191 8108;8150;8191;8232 36.506 20.415 1 314910 24973 2601 15488 15497 29169;29170;29171;29172 29171 0.15115202990614307 LPSTGRPLA 9 Unmodified _LPSTGRPLA_ 0 0 0 ENST00000316097.12_1_19:1924295-1924604:+|nuORF ENST00000316097.12_1_19:1924295-1924604:+|nuORF ENST00000316097.12_1_19:1924295-1924604:+|nuORF MSMS UPN47_class_I_Rep_2 3 456.2693176269531 2 456.269084 910.523616 NaN NaN NaN NaN NaN NaN NaN 45.538 1 48.891 48.391 49.391 3.3534 0 0 0 0.32573 1 9605 9605 9.3831 0 1 24974 6134 15489 15498 29173 29173 0.06477491134364755 LPSTVSVAVP 10 Unmodified _LPSTVSVAVP_ 0 0 0 REV__L1M4a1_dup427|chr2:135103479-135104570:+|1.6018182733609276|0.0659346965168483|4.6|151.0|29|3|sense REV__L1M4a1_dup427|chr2:135103479-135104570:+|1.6018182733609276|0.0659346965168483|4.6|151.0|29|3|sense MSMS UPN48_class_I_Rep_1 5 485.2856750488281 2 485.2844 968.554247 NaN NaN NaN NaN NaN NaN NaN 37.52 1 41.025 40.525 41.525 3.5052 0 0 0 0.53105 1 6390 6390 1.6526 0 1 + 24975 24493 15490 15499 29174 29174 0.06871224728763536 LPSYMFLRL 9 Unmodified _LPSYMFLRL_ 0 0 0 REV__L1ME4b_dup17530|chr15:75895573-75896328:+|1.069903311964307|0.3157928129816579|1.76|151.0|39|2|anti-sense REV__L1ME4b_dup17530|chr15:75895573-75896328:+|1.069903311964307|0.3157928129816579|1.76|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_1 5 570.3297119140625 2 570.31772 1138.62089 NaN NaN NaN NaN NaN NaN NaN 49.008 1 52.532 52.032 53.032 3.5239 0 0 0 0.37692 1 9857 9857 6.2058 1.8765 1 + 24976 28269 15491 15500 29175 29175 0.05712137019008878 LPTDIRELS 9 Unmodified _LPTDIRELS_ 0 0 0 L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|4|1|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|4|1|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 521.7713012695312 2 522.290214 1042.56587 0.15835 8.2704E-05 -0.33618 -0.00017558 -0.17783 -9.2877E-05 522.2899130392487 49.96 0.9655 53.588 53.367 54.332 3.6285 68 47 3 0 0 0 0.12086 1 10919 10919 7.609 0 1 104510 24977 12452 15492 15501 29176 29176 0.04629421752088092 LPTDIRELS 9 Unmodified _LPTDIRELS_ 0 0 0 L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|4|1|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|4|1|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 521.7713623046875 2 522.290214 1042.56587 0.040816 2.1318E-05 -0.18753 -9.7945E-05 -0.14671 -7.6627E-05 522.2900100833335 50.366 0.55815 53.709 53.408 53.966 3.3431 50 27 3 0 0 0 0.1229 1 11053 11053 4.897 0 1 130670 24978 12452 15492 15501 29177 29177 0.04629421752088092 LPTQVKTL 8 Unmodified _LPTQVKTL_ 0 0 0 ENST00000553851.2_1_X:48928815-48929193:-|nuORF ENST00000553851.2_1_X:48928815-48929193:-|nuORF ENST00000553851.2_1_X:48928815-48929193:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 450.2813720703125 2 450.28166 898.548768 0.023795 1.0714E-05 -0.29819 -0.00013427 -0.2744 -0.00012356 450.2814065894679 41.813 1.2037 45.321 44.932 46.135 3.5079 279 118 3 0 0 0 0.82752 1 7652 7652 89.427 4.1548 1 1238200 24979 7414 15493 15502 29178 29178 0.09543545936958253 LPTSQPIIE 9 Unmodified _LPTSQPIIE_ 0 0 0 ENST00000509314.5_1_4:15661362-15661458:-|nuORF ENST00000509314.5_1_4:15661362-15661458:-|nuORF ENST00000509314.5_1_4:15661362-15661458:-|nuORF MSMS UPN47_class_I_Rep_2 3 499.2816162109375 2 499.281857 996.549162 NaN NaN NaN NaN NaN NaN NaN 47.507 1 50.857 50.357 51.357 3.3492 0 0 0 0.39428 1 10204 10204 2.0598 0 1 24980 7171 15494 15503 29179 29179 0.05074920866138655 LPTTLVTVS 9 Unmodified _LPTTLVTVS_ 0 0 0 REV__L1MB8_dup10288|chr10:74032711-74033482:+|1.3748132443330716|0.3893537115034522|1.82|151.0|12|1|sense REV__L1MB8_dup10288|chr10:74032711-74033482:+|1.3748132443330716|0.3893537115034522|1.82|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.779052734375 2 465.778951 929.543348 0.22777 0.00010609 -0.693 -0.00032278 -0.46523 -0.00021669 465.7786569035813 91.399 0.10073 91.399 91.336 91.437 0 10 7 2 0 0 0 0.30034 1 22061 22061 13.906 0 1 82970 + 24981 26331 15495 15504 29180 29180 0.07575822354465345 LPTTLVTVS 9 Unmodified _LPTTLVTVS_ 0 0 0 REV__L1MB8_dup10288|chr10:74032711-74033482:+|1.3748132443330716|0.3893537115034522|1.82|151.0|12|1|sense REV__L1MB8_dup10288|chr10:74032711-74033482:+|1.3748132443330716|0.3893537115034522|1.82|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 465.7789611816406 2 465.778951 929.543348 NaN NaN NaN NaN NaN NaN NaN 85.437 1 89.028 88.528 89.528 3.5914 0 0 0 0.2408 1 21335 21335 13.906 0 1 + 24982 26331 15495 15504 29181 29181 0.07575822354465345 LPTTSIPLS 9 Unmodified _LPTTSIPLS_ 0 0 0 L1MA4_dup428|chr1:176112418-176113521:-|1.1649422888884464|0.0210949746579452|5.79|151.0|69|3|anti-sense L1MA4_dup428|chr1:176112418-176113521:-|1.1649422888884464|0.0210949746579452|5.79|151.0|69|3|anti-sense L1MA4_dup428|chr1:176112418-176113521:-|1.1649422888884464|0.0210949746579452|5.79|151.0|69|3|anti-sense MSMS UPN48_class_I_Rep_3 7 464.75439453125 2 464.771126 927.527698 NaN NaN NaN NaN NaN NaN NaN 75.289 1 78.855 78.355 79.355 3.5659 0 0 0 0.29868 1 17679 17679 10.824 3.5347 1 24983 9690 15496 15505 29182 29182 0.061035358374169846 LPTYYTVMLI 10 Unmodified _LPTYYTVMLI_ 0 0 0 REV__Kanga11a_dup736|chr14:35185435-35186032:+|1.1278303466464266|0.0074745164660504|7.24|151.0|28|1|anti-sense REV__Kanga11a_dup736|chr14:35185435-35186032:+|1.1278303466464266|0.0074745164660504|7.24|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_3 4 405.22198486328125 3 405.222754 1212.64643 NaN NaN NaN NaN NaN NaN NaN 49.417 1 52.652 52.152 53.152 3.2345 0 0 0 0.53105 1 10830 10830 1.9064 0 1 + 24984 23989 15497 15506 29183 29183 0.048615667507874605 LPVFLLMK 8 Unmodified _LPVFLLMK_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|246|1|anti-sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|246|1|anti-sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|246|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 480.29962158203125 2 480.801174 959.587796 0.25647 0.00012331 0.33941 0.00016319 0.59589 0.0002865 480.8013069273065 57.468 0.25386 60.76 60.68 60.934 3.2912 31 22 2 0 0 0 0.72333 1 13232 13232 6.3541 0 1 213990 24985 9475 15498 15507 29184 29184 0.10638554966976699 LPVFLLMK 8 Unmodified _LPVFLLMK_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|246|1|anti-sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|246|1|anti-sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|246|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 480.2998352050781 2 480.801174 959.587796 0.25643 0.00012329 0.62571 0.00030084 0.88215 0.00042414 480.8014276278869 57.247 0.36201 60.538 60.329 60.691 3.2912 43 28 2 0 0 0 0.72333 1 13195 13195 6.3541 0 1 237910 24986 9475 15498 15507 29185 29185 0.10638554966976699 LPVFYVGLL 9 Unmodified _LPVFYVGLL_ 0 0 0 L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|272|2|anti-sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|272|2|anti-sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|272|2|anti-sense MSMS UPN48_class_I_Rep_3 7 510.8081359863281 2 510.810054 1019.60555 NaN NaN NaN NaN NaN NaN NaN 59.223 1 62.746 62.246 63.246 3.5231 0 0 0 0.381 1 12907 12907 5.2307 0 1 24987 14409 15499 15508 29186 29186 0.09653593493464996 LPVGRDVE 8 Unmodified _LPVGRDVE_ 0 0 0 Tigger3b_dup3165|chr8:27394289-27395390:-|1.7655650676628176|0.0123806433084045|7.16|151.0|36|3|sense Tigger3b_dup3165|chr8:27394289-27395390:-|1.7655650676628176|0.0123806433084045|7.16|151.0|36|3|sense Tigger3b_dup3165|chr8:27394289-27395390:-|1.7655650676628176|0.0123806433084045|7.16|151.0|36|3|sense MSMS UPN48_class_I_Rep_1 5 442.74462890625 2 442.745442 883.476331 NaN NaN NaN NaN NaN NaN NaN 85.381 1 88.987 88.487 89.487 3.6059 0 0 0 0.40581 1 20420 20420 2.8892 0 1 24988 33384 15500 15509 29187 29187 0.029932118633723803 LPVIVIVTAES 11 Unmodified _LPVIVIVTAES_ 0 0 0 REV__AluYc_dup2156|chr8:55898833-55899073:-|2.460675878280772|0.0041717582642189|9.2|151.0|2|1|sense REV__AluYc_dup2156|chr8:55898833-55899073:-|2.460675878280772|0.0041717582642189|9.2|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 570.847900390625 2 570.847364 1139.68018 NaN NaN NaN NaN NaN NaN NaN 117.65 1 121.14 120.64 121.64 3.4891 0 0 0 0.38417 1 28763 28763 0.30703 0 1 + 24989 17244 15501 15510 29188 29188 0.11592311514186804 LPVKTVKQ 8 Unmodified _LPVKTVKQ_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.7972717285156 2 456.797478 911.580402 NaN NaN NaN NaN NaN NaN NaN 22.833 1 26.277 25.777 26.777 3.4447 0 0 0 0.40472 1 2775 2775 4.3292 2.0265 1 24990 13849 15502 15511 29189 29189 0.12107538690884212 LPVKTVKQ 8 Unmodified _LPVKTVKQ_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.79766845703125 2 456.797478 911.580402 -0.89997 -0.00041111 0.63273 0.00028903 -0.26725 -0.00012208 456.7976772146846 23.219 0.53136 26.569 26.331 26.863 3.3503 55 42 2 0 0 0 0.82752 1 2914 2914 6.2058 2.2614 1 48402 24991 13849 15502 15511 29190 29190 0.12107538690884212 LPVKTVKQ 8 Unmodified _LPVKTVKQ_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|289|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 456.797478 911.580402 -0.48291 -0.00022059 0.64494 0.00029461 0.16203 7.4014E-05 456.7977301288266 22.68 0.050781 26.125 26.102 26.153 3.4447 -0.21274 0.00053994 NaN 6.2058 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 18201 24992 13849 15502 15511 0.12107538690884212 LPVLKLHKW 9 Unmodified _LPVLKLHKW_ 0 0 0 L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|71|3|anti-sense L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|71|3|anti-sense L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3634643554688 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.062 1 49.762 49.262 50.262 3.6999 0 0 0 0.40038 1 9735 9735 0.6015 0 1 24993 12468 15503 15512 29191 29191 0.15103768778658377 LPVLMYVLA 9 Unmodified _LPVLMYVLA_ 0 0 0 nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3 nc|ENSG00000100599|Q8TB24-4|RIN3 nc|ENSG00000100599|Q8TB24-4|RIN3 MULTI-SECPEP UPN47_class_I_Rep_3 4 509.3262634277344 2 509.803914 1017.59328 0.27885 0.00014216 -0.36435 -0.00018575 -0.085498 -4.3587E-05 509.80354049970515 75.631 0.44061 78.888 78.849 79.29 3.2573 55 40 2 0 0 0 0.12422 1 18805 18805 2.3027 0 1 63568 24994 1521 15504 15513 29192 29192 0.08518233758775295 LPVLVGYS 8 Unmodified _LPVLVGYS_ 0 0 0 L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 424.2498779296875 2 424.249829 846.485105 0.11555 4.9024E-05 0.29721 0.00012609 0.41277 0.00017512 424.24978656159385 96.665 1.0506 100.44 100.1 101.15 3.7767 345 143 3 0 0 0 0.82752 2 23933 23933;23993 10.183 0 1 4073200 24995 9472 15505 15514 29193;29194 29193 0.055721854998637355 LPVLVGYS 8 Unmodified _LPVLVGYS_ 0 0 0 L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 424.2497253417969 2 424.249829 846.485105 -0.10851 -4.6037E-05 0.41533 0.0001762 0.30682 0.00013017 424.2498504523893 96.574 0.96317 100.19 99.781 100.74 3.6124 247 115 3 0 0 0 0.82752 1 23308 23308 10.183 0 1 2330600 24996 9472 15505 15514 29195 29195 0.055721854998637355 LPVLVGYS 8 Unmodified _LPVLVGYS_ 0 0 0 L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 424.249829 846.485105 0.082161 3.4857E-05 0.20414 8.6606E-05 0.2863 0.00012146 424.24976669263293 96.397 0.80699 100.18 99.794 100.6 3.7804 -0.10414 -1.7128E-05 NaN 10.183 262 105 3 NaN NaN NaN NaN 0 NaN NaN 0 2301700 24997 9472 15505 15514 0.055721854998637355 LPVLVGYS 8 Unmodified _LPVLVGYS_ 0 0 0 L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|80|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 424.249829 846.485105 0.11636 4.9365E-05 0.076322 3.238E-05 0.19268 8.1745E-05 424.2497074806885 96.412 0.99465 100.32 99.91 100.9 3.9084 0.03844 -0.00012558 NaN 10.183 291 136 3 NaN NaN NaN NaN 0 NaN NaN 0 2806400 24998 9472 15505 15514 0.055721854998637355 LPVPLPYY 8 Unmodified _LPVPLPYY_ 0 0 0 REV__MLT1F2-int_dup202|chr10:73217849-73219121:-|1.2438415248420789|0.1143515404493411|3.44|149.0|13|1|sense REV__MLT1F2-int_dup202|chr10:73217849-73219121:-|1.2438415248420789|0.1143515404493411|3.44|149.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 481.2707824707031 2 481.273304 960.532055 NaN NaN NaN NaN NaN NaN NaN 45.372 1 49.071 48.571 49.571 3.6999 0 0 0 0.40581 1 9523 9523 2.8892 0 1 + 24999 31722 15506 15515 29196 29196 0.050210450509894144 LPVPVFKRK 9 Unmodified _LPVPVFKRK_ 0 0 0 ENSG00000156234|ENST00000682537|CXCL13 ENSG00000156234|ENST00000682537|CXCL13 ENSG00000156234|ENST00000682537|CXCL13 MSMS UPN47_class_I_Rep_1 2 542.3544921875 2 542.355494 1082.69644 NaN NaN NaN NaN NaN NaN NaN 43.032 1 46.72 46.22 47.22 3.6875 0 0 0 0.40038 1 8809 8809 0.6015 0 1 25000 3727 15507 15516 29197 29197 0.1583948226159464 LPVRGHWP 8 Unmodified _LPVRGHWP_ 0 0 0 ENST00000557844.1_2_15:82554384-82554618:-|nuORF ENST00000557844.1_2_15:82554384-82554618:-|nuORF ENST00000557844.1_2_15:82554384-82554618:-|nuORF MSMS UPN47_class_I_Rep_2 3 481.2713317871094 2 481.271961 960.52937 NaN NaN NaN NaN NaN NaN NaN 45.701 1 49.055 48.555 49.555 3.3534 0 0 0 0.40625 1 9655 9655 2.3027 0 1 25001 7443 15508 15517 29198 29198 0.04752634436692915 LPVRGHWP 8 Unmodified _LPVRGHWP_ 0 0 0 ENST00000557844.1_2_15:82554384-82554618:-|nuORF ENST00000557844.1_2_15:82554384-82554618:-|nuORF ENST00000557844.1_2_15:82554384-82554618:-|nuORF MSMS UPN47_class_I_Rep_3 4 481.2715148925781 2 481.271961 960.52937 NaN NaN NaN NaN NaN NaN NaN 45.919 1 49.163 48.663 49.663 3.2441 0 0 0 0.40625 1 9775 9775 2.3027 0 1 25002 7443 15508 15517 29199 29199 0.04752634436692915 LPVRPSASYH 10 Unmodified _LPVRPSASYH_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MULTI-MSMS UPN48_class_I_Rep_1 5 563.8042602539062 2 563.803823 1125.59309 0.47956 0.00027038 -0.0079956 -4.508E-06 0.47156 0.00026587 563.803648333024 35.723 0.5203 39.233 38.91 39.431 3.5101 71 50 2 0 0 0 0.56078 1 5808 5808 3.2813 0 1 116770 25003 16850 15509 15518 29200 29200 0.035319500831292316 LPVRTADY 8 Unmodified _LPVRTADY_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS UPN47_class_I_Rep_1 2 467.7529602050781 2 467.753267 933.491981 -0.042053 -1.967E-05 -0.23967 -0.00011211 -0.28173 -0.00013178 467.75312115415284 50.132 1.1954 53.761 53.344 54.539 3.6285 111 59 3 0 0 0 0.82752 2 10940 10940;11041 5.2307 0 1 343400 + 25004 19990 15510 15519 29201;29202 29201 0.02257498380402012 LPVRTADY 8 Unmodified _LPVRTADY_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS UPN48_class_I_Rep_1 5 467.753173828125 2 467.753267 933.491981 0.077584 3.629E-05 -0.04899 -2.2915E-05 0.028594 1.3375E-05 467.75313236861695 50.734 1.0065 54.259 53.773 54.78 3.5246 146 65 3 0 0 0 0.82752 1 10324 10324 12.532 0 1 855060 + 25005 19990 15510 15519 29203 29203 0.02257498380402012 LPVSPPKWR 9 Unmodified _LPVSPPKWR_ 0 0 0 REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.3219604492188 2 540.321651 1078.62875 0.36368 0.00019651 0.41808 0.0002259 0.78176 0.0004224 540.3218095047426 108.9 0.69935 108.9 108.7 109.4 0 118 51 3 0 0 0 0.41259 1 26682 26682 7.2892 0.56607 1 52292000 + 25006 21857 15511 15520 29204 29204 0.09258032330785682 LPVSPPKWR 9 Unmodified _LPVSPPKWR_ 0 0 0 REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 32.926 1 32.926 32.426 33.426 0 0 0 0 0.39518 1 5697 5697 1.8442 0 1 + 25007 21857 15511 15520 29205 29205 0.09258032330785682 LPVSPPKWR 9 Unmodified _LPVSPPKWR_ 0 0 0 REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 39.016 1 39.016 38.516 39.516 0 0 0 0 0.38478 1 7471 7471 4.3292 0.38484 1 + 25008 21857 15511 15520 29206 29206 0.09258032330785682 LPVSPPKWR 9 Unmodified _LPVSPPKWR_ 0 0 0 REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF REV__ENST00000354300.4_1_12:110971622-110971877:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 540.322021484375 2 540.321651 1078.62875 0.59026 0.00031893 0.37665 0.00020351 0.96691 0.00052244 540.3216822912758 108.77 0.65746 112.3 112.08 112.74 3.5333 265 77 4 0 0 0 0.41259 1 26426 26426 7.2892 0.56607 1 131260000 + 25009 21857 15511 15520 29207 29207 0.09258032330785682 LPVSRVELLR 10 Unmodified _LPVSRVELLR_ 0 0 0 REV__ENST00000544568.2_1_12:130955156-130991273:-|nuORF REV__ENST00000544568.2_1_12:130955156-130991273:-|nuORF MSMS UPN46_class_I_Rep_3 1 591.3711547851562 2 591.371872 1180.72919 NaN NaN NaN NaN NaN NaN NaN 108.39 1 108.39 107.89 108.89 0 0 0 0 0.53105 1 26502 26502 8.7454 0 1 + 25010 22929 15512 15521 29208 29208 0.14605644593802936 LPVSVRVGQAV 11 Unmodified _LPVSVRVGQAV_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MSMS UPN46_class_I_Rep_3 1 562.8431396484375 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 107.99 1 107.99 107.49 108.49 0 0 0 0 0.11455 1 26363 26363 21.537 8.4945 1 25011 4710 15513 15522 29209 29209 0.11445382668375714 LPVSVRVGQAV 11 Unmodified _LPVSVRVGQAV_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MSMS UPN46_class_I_Rep_3 1 562.8429565429688 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.38 1 108.38 107.88 108.88 0 0 0 0 0.22906 1 26500 26500 16.149 4.6544 1 25012 4710 15513 15522 29210 29210 0.11445382668375714 LPVSVRVGQAV 11 Unmodified _LPVSVRVGQAV_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MSMS UPN46_class_I_Rep_3 1 562.8428955078125 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.52 1 108.52 108.02 109.02 0 0 0 0 0.3116 1 26546 26546 11.495 2.1116 1 25013 4710 15513 15522 29211 29211 0.11445382668375714 LPVSVRVGQAV 11 Unmodified _LPVSVRVGQAV_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS UPN48_class_I_Rep_2 6 562.8436889648438 2 562.842948 1123.67134 0.49219 0.00027703 0.1255 7.0636E-05 0.61769 0.00034766 562.8429424532642 107.81 0.15082 111.49 111.44 111.59 3.6783 42 14 4 0 0 0 0.295 1 25508 25508 16.149 3.9084 1 50472000 25014 4710 15513 15522 29212 29212 0.11445382668375714 LPVSVRVGQAV 11 Unmodified _LPVSVRVGQAV_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS UPN48_class_I_Rep_3 7 562.84326171875 2 562.842948 1123.67134 0.43041 0.00024225 0.30687 0.00017272 0.73728 0.00041497 562.8430278968109 107.85 0.1931 111.53 111.46 111.66 3.6813 59 19 4 0 0 0 0.295 1 25457 25457 16.149 0 1 36746000 25015 4710 15513 15522 29213 29213 0.11445382668375714 LPVVKKNI 8 Unmodified _LPVVKKNI_ 0 0 0 REV__ENST00000486256.5_1_7:6777360-6777438:+|nuORF REV__ENST00000486256.5_1_7:6777360-6777438:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 455.8080749511719 2 455.807845 909.601138 0.049571 2.2595E-05 -0.17361 -7.9134E-05 -0.12404 -5.6539E-05 455.8078201746988 65.147 0.62271 68.503 68.352 68.975 3.3557 44 37 2 0 0 0 0.82752 1 15532 15532 4.756 0 1 37418 + 25016 18751 15514 15523 29214 29214 0.1427212907054809 LPVVKKNI 8 Unmodified _LPVVKKNI_ 0 0 0 REV__ENST00000486256.5_1_7:6777360-6777438:+|nuORF REV__ENST00000486256.5_1_7:6777360-6777438:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 455.807845 909.601138 0.049571 2.2595E-05 -0.17361 -7.9134E-05 -0.12404 -5.6539E-05 455.8078201746988 65.147 0.62271 68.503 68.352 68.975 3.3557 -0.16911 -0.00010352 NaN 4.756 44 37 2 NaN NaN NaN NaN 0 NaN NaN 0 37418 + 25017 18751 15514 15523 0.1427212907054809 LPVVKKNI 8 Unmodified _LPVVKKNI_ 0 0 0 REV__ENST00000486256.5_1_7:6777360-6777438:+|nuORF REV__ENST00000486256.5_1_7:6777360-6777438:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 455.807845 909.601138 -0.16934 -7.7188E-05 0.13835 6.306E-05 -0.030996 -1.4128E-05 455.8080036955837 65.586 0.55914 68.841 68.583 69.142 3.2556 0.16911 0.00018086 NaN 4.756 43 33 2 NaN NaN NaN NaN 0 NaN NaN 0 45966 + 25018 18751 15514 15523 0.1427212907054809 LPWEKKKYFQ 10 Unmodified _LPWEKKKYFQ_ 0 0 0 ENSG00000111670|ENST00000299314|GNPTAB ENSG00000111670|ENST00000299314|GNPTAB ENSG00000111670|ENST00000299314|GNPTAB MSMS UPN47_class_I_Rep_2 3 456.25537109375 3 456.255446 1365.74451 NaN NaN NaN NaN NaN NaN NaN 20.924 1 24.332 23.832 24.832 3.4074 0 0 0 0.53105 1 2255 2255 0.15932 0 1 25019 1982 15515 15524 29215 29215 0.0762651139098125 LPWIGLEPVPK 11 Unmodified _LPWIGLEPVPK_ 0 0 0 ENST00000452918.6_2_19:19104437-19104488:-|nuORF ENST00000452918.6_2_19:19104437-19104488:-|nuORF ENST00000452918.6_2_19:19104437-19104488:-|nuORF MSMS UPN46_class_I_Rep_3 1 624.8748779296875 2 624.871174 1247.72779 NaN NaN NaN NaN NaN NaN NaN 96.091 1 96.091 95.591 96.591 0 0 0 0 0.38417 1 23355 23355 2.7352 1.2533 1 25020 6821 15516 15525 29216 29216 0.11384010505025799 LPWKLPVV 8 Unmodified _LPWKLPVV_ 0 0 0 ENST00000407418.7_1_22:39261369-39261624:-|nuORF ENST00000407418.7_1_22:39261369-39261624:-|nuORF ENST00000407418.7_1_22:39261369-39261624:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.3068542480469 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 53.645 1 53.645 53.145 54.145 0 0 0 0 0.40738 1 11558 11558 0.79363 0 1 25021 6615 15517 15526 29217 29217 0.11805030558900853 LPWLQVAILW 10 Unmodified _LPWLQVAILW_ 0 0 0 chr6:110442775-110446873|150|26.77|0.83|5.0|-|1|SLC22A16,SLC22A16|1 chr6:110442775-110446873|150|26.77|0.83|5.0|-|1|SLC22A16,SLC22A16|1 chr6:110442775-110446873|150|26.77|0.83|5.0|-|1|SLC22A16,SLC22A16|1 MSMS UPN48_class_I_Rep_1 5 619.8707885742188 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 87.675 1 91.294 90.794 91.794 3.6187 0 0 0 0.53105 1 21015 21015 1.8442 0 1 25022 613 15518 15527 29218 29218 0.11296331713219843 LPWPLLRAVF 10 Unmodified _LPWPLLRAVF_ 0 0 0 LTR40c_dup177|chr4:151114568-151114965:+|1.189294574040197|0.0375616248953629|4.98|151.0|1|1|sense LTR40c_dup177|chr4:151114568-151114965:+|1.189294574040197|0.0375616248953629|4.98|151.0|1|1|sense LTR40c_dup177|chr4:151114568-151114965:+|1.189294574040197|0.0375616248953629|4.98|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 606.3700561523438 2 606.368601 1210.72265 NaN NaN NaN NaN NaN NaN NaN 84.96 1 88.551 88.051 89.051 3.5914 0 0 0 0.53105 1 21232 21232 1.4819 0.28856 1 25023 15636 15519 15528 29219 29219 0.1257175143305176 LPWPVPKLRR 10 Unmodified _LPWPVPKLRR_ 0 0 0 ENSG00000186212|ENST00000334306|SOWAHB ENSG00000186212|ENST00000334306|SOWAHB ENSG00000186212|ENST00000334306|SOWAHB MSMS UPN48_class_I_Rep_1 5 631.3895263671875 2 631.398225 1260.7819 NaN NaN NaN NaN NaN NaN NaN 84.232 1 87.829 87.329 88.329 3.5973 0 0 0 0.53105 1 20163 20163 1.6526 0.17072 1 25024 5148 15520 15529 29220 29220 0.16193647447244075 LPWTFGGSLF 10 Unmodified _LPWTFGGSLF_ 0 0 0 ENST00000471144.1_1_20:47852594-47852858:+|nuORF ENST00000471144.1_1_20:47852594-47852858:+|nuORF ENST00000471144.1_1_20:47852594-47852858:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 563.2945556640625 2 562.792392 1123.57023 0.5116 0.00028792 -0.16718 -9.4088E-05 0.34442 0.00019384 562.7922131101055 66.673 0.87162 70.159 69.747 70.618 3.4866 99 58 2 0 0 0 0.56078 1 15374 15374 3.2813 0 1 215660 25025 6923 15521 15530 29221 29221 0.013389309656758996 LPWVNEMLTG 10 Unmodified _LPWVNEMLTG_ 0 0 0 REV__L1PA15_dup131|chr1:83142096-83144198:-|2.124605804552771|0.104303594837262|4.35|151.0|99|2|anti-sense REV__L1PA15_dup131|chr1:83142096-83144198:-|2.124605804552771|0.104303594837262|4.35|151.0|99|2|anti-sense MSMS UPN48_class_I_Rep_3 7 580.2957153320312 2 580.294442 1158.57433 NaN NaN NaN NaN NaN NaN NaN 71.158 1 74.676 74.176 75.176 3.5185 0 0 0 0.53105 1 16505 16505 1.8442 0 1 + 25026 29184 15522 15531 29222 29222 0.0013865239704955457 LPWVVPAK 8 Unmodified _LPWVVPAK_ 0 0 0 L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_3 7 455.2734069824219 2 455.281463 908.548374 NaN NaN NaN NaN NaN NaN NaN 42.74 1 46.381 45.881 46.881 3.6415 0 0 0 0.4032 1 7868 7868 6.3541 0 1 25027 13799 15523 15532 29223 29223 0.0904417100775845 LPYALMQKLP 10 Unmodified _LPYALMQKLP_ 0 0 0 REV__HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|41|3|sense REV__HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|41|3|sense MSMS UPN48_class_I_Rep_1 5 587.8232421875 2 587.338652 1172.66275 NaN NaN NaN NaN NaN NaN NaN 61.99 1 65.458 64.958 65.958 3.4678 0 0 0 0.53105 1 13838 13838 1.6526 0.17072 1 + 25028 23724 15524 15533 29224 29224 0.08332692707540446 LPYPRINL 8 Unmodified _LPYPRINL_ 0 0 0 ENST00000474725.5_1_1:184690416-184706818:-|nuORF;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|4|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|10|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|1|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|13|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|6|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|17|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|8|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|3|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|2|intron;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3 ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENST00000474725.5_1_1:184690416-184706818:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.2944030761719 2 493.295102 984.575651 NaN NaN NaN NaN NaN NaN NaN 60.553 1 63.818 63.318 64.318 3.2654 0 0 0 0.4044 1 14177 14177 4.756 0 1 25029 2181 15525 15534 29225 29225 0.08274654548119997 LPYPRINL 8 Unmodified _LPYPRINL_ 0 0 0 ENST00000474725.5_1_1:184690416-184706818:-|nuORF;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|4|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|10|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|1|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|13|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|6|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|17|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|8|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|3|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|2|intron;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3 ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENST00000474725.5_1_1:184690416-184706818:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.2942810058594 2 493.295102 984.575651 NaN NaN NaN NaN NaN NaN NaN 60.712 1 63.977 63.477 64.477 3.2654 0 0 0 0.38547 1 14223 14223 13.508 0 1 25030 2181 15525 15534 29226 29226 0.08274654548119997 LPYPRINL 8 Unmodified _LPYPRINL_ 0 0 0 ENST00000474725.5_1_1:184690416-184706818:-|nuORF;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|4|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|10|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|1|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|13|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|6|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|17|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|8|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|3|intron;ENSG00000116406.19,EDEM3,chr1,-,I19.1,184701545,184702810|76|13.24|2|intron;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3 ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENST00000474725.5_1_1:184690416-184706818:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.2950439453125 2 493.295102 984.575651 0.1407 6.9405E-05 -0.058961 -2.9085E-05 0.081736 4.032E-05 493.2949397580338 60.581 0.56857 63.746 63.4 63.969 3.1651 55 44 2 0 0 0 0.82752 3 14194 14194;14238;14275 13.508 0 1 117410 25031 2181 15525 15534 29227;29228;29229 29227 0.08274654548119997 LPYQRVLP 8 Unmodified _LPYQRVLP_ 0 0 0 ENSG00000173991|ENST00000309889|TCAP ENSG00000173991|ENST00000309889|TCAP ENSG00000173991|ENST00000309889|TCAP MULTI-MSMS UPN47_class_I_Rep_1 2 493.2948913574219 2 493.295102 984.575651 0.18368 9.0607E-05 0.76341 0.00037659 0.94709 0.00046719 493.29497101958555 60.242 0.61662 63.64 63.376 63.993 3.3982 71 55 2 0 0 0 0.82752 3 14046 14001;14046;14087 19.439 0 1 144500 25032 4657 15526 15535 29230;29231;29232 29231 0.08274654548142735 LPYTMTIK 8 Unmodified _LPYTMTIK_ 0 0 0 REV__L1PB2_dup2175|chr12:71764469-71765845:-|1.2031340944566606|0.2562765503255221|2.23|151.0|38|3|sense REV__L1PB2_dup2175|chr12:71764469-71765845:-|1.2031340944566606|0.2562765503255221|2.23|151.0|38|3|sense MSMS UPN47_class_I_Rep_1 2 483.7718811035156 2 483.770071 965.52559 NaN NaN NaN NaN NaN NaN NaN 41.702 1 45.381 44.881 45.881 3.6792 0 0 0 0.39996 1 8401 8401 7.9102 0 1 + 25033 30525 15527 15536 29233 29233 0.04144783827973697 LPYTVHRMF 9 Unmodified _LPYTVHRMF_ 0 0 0 ENSG00000103740|ENST00000258873|ACSBG1 ENSG00000103740|ENST00000258873|ACSBG1 ENSG00000103740|ENST00000258873|ACSBG1 MSMS UPN48_class_I_Rep_2 6 581.8170776367188 2 582.305144 1162.59573 NaN NaN NaN NaN NaN NaN NaN 54.069 1 57.651 57.151 58.151 3.5817 0 0 0 0.39428 1 11393 11393 2.0598 0 1 25034 1671 15528 15537 29234 29234 0.020940822164448036 LPYYRGRW 8 Unmodified _LPYYRGRW_ 0 0 0 REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4 REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4 MSMS UPN48_class_I_Rep_2 6 555.7957763671875 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 35.518 1 39.205 38.705 39.705 3.6877 0 0 0 0.40738 1 5864 5864 0.79363 0 1 + 25035 20238 15529 15538 29235 29235 0.026642886369018015 LQAALRAWVI 10 Unmodified _LQAALRAWVI_ 0 0 0 nc|ENSG00000214686|A8MYZ5|IQCF6;ENSG00000214686|ENST00000667863|IQCF6 nc|ENSG00000214686|A8MYZ5|IQCF6 nc|ENSG00000214686|A8MYZ5|IQCF6 MULTI-MSMS UPN46_class_I_Rep_3 1 570.84814453125 2 570.848033 1139.68151 0.2002 0.00011428 -0.11127 -6.3516E-05 0.08893 5.0766E-05 570.8479340034941 29.322 0.10253 29.322 29.281 29.384 0 10 6 2 0 0 0 0.56333 1 4634 4634 1.4819 0.95714 1 298530 25036 5619 15530 15539 29236 29236 0.11725990393597385 LQAGKILLYYK 11 Unmodified _LQAGKILLYYK_ 0 0 0 ENST00000523989.1_1_8:43052051-43052222:+|nuORF;ENST00000519705.1_1_8:43052051-43054709:+|nuORF ENST00000523989.1_1_8:43052051-43052222:+|nuORF ENST00000523989.1_1_8:43052051-43052222:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 437.26776123046875 3 437.267463 1308.78056 -0.33898 -0.00014823 1.0849 0.00047437 0.74588 0.00032615 437.2677958181685 50.033 0.42613 53.259 53.019 53.445 3.2262 35 24 2 0 0 0 0.68024 1 11068 11068 0.50596 0 1 82027 25037 7221 15531 15540 29237 29237 0.13851968567837503 LQAGKILLYYK 11 Unmodified _LQAGKILLYYK_ 0 0 0 ENST00000523989.1_1_8:43052051-43052222:+|nuORF;ENST00000519705.1_1_8:43052051-43054709:+|nuORF ENST00000523989.1_1_8:43052051-43052222:+|nuORF ENST00000523989.1_1_8:43052051-43052222:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 437.6022644042969 3 437.267463 1308.78056 -0.047954 -2.0969E-05 0.36434 0.00015931 0.31638 0.00013834 437.60198805366736 49.449 1.0454 52.974 52.563 53.608 3.5246 168 71 3 0 0 0 0.65674 2 9936 9936;10093 2.6312 0.37851 1 542560 25038 7221 15531 15540 29238;29239 29238 0.13851968567837503 LQAGKILLYYK 11 Unmodified _LQAGKILLYYK_ 0 0 0 ENST00000523989.1_1_8:43052051-43052222:+|nuORF;ENST00000519705.1_1_8:43052051-43054709:+|nuORF ENST00000523989.1_1_8:43052051-43052222:+|nuORF ENST00000523989.1_1_8:43052051-43052222:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 437.267463 1308.78056 -0.12189 -5.3298E-05 1.1203 0.00048987 0.99841 0.00043657 437.2678120289779 49.642 0.42619 53.301 53.184 53.61 3.6592 0.021063 2.7206E-05 NaN 0.50596 38 24 3 NaN NaN NaN NaN 0 NaN NaN 0 76238 25039 7221 15531 15540 0.13851968567837503 LQAKFLTS 8 Unmodified _LQAKFLTS_ 0 0 0 REV__Charlie13a_dup268|chr7:139881845-139882982:+|2.9913623212063287|0.2511980000143909|3.57|151.0|15|2|sense REV__Charlie13a_dup268|chr7:139881845-139882982:+|2.9913623212063287|0.2511980000143909|3.57|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 454.26544189453125 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 22.722 1 26.426 25.926 26.926 3.7042 0 0 0 0.40643 1 2689 2689 2.0598 0 1 + 25040 17284 15532 15541 29240 29240 0.06046972902856851 LQALAIVYG 9 Unmodified _LQALAIVYG_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MSMS UPN48_class_I_Rep_3 7 474.2825622558594 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 110.36 1 114.03 113.53 114.53 3.67 0 0 0 0.39326 1 26189 26189 2.3027 0.4585 1 25041 3075 15533 15542 29241 29241 0.07335545936950894 LQAQQERYC 9 Unmodified _LQAQQERYC_ 0 0 0 ENST00000402966.1_1_22:42092721-42093255:+|nuORF ENST00000402966.1_1_22:42092721-42093255:+|nuORF ENST00000402966.1_1_22:42092721-42093255:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.7674560546875 2 569.769123 1137.52369 0.045568 2.5963E-05 0.080775 4.6023E-05 0.12634 7.1986E-05 569.7690273691491 36.576 0.46574 39.974 39.749 40.215 3.3988 49 33 2 0 0 0 0.48846 1 6918 6918 1.8442 0 1 77098 25042 6601 15534 15543 29242 29242 -0.03956876927918529 LQARNGLK 8 Unmodified _LQARNGLK_ 0 0 0 MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 450.2752380371094 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 74.119 1 77.609 77.109 78.109 3.49 0 0 0 0.40625 1 17503 17503 2.3027 0 1 25043 16088 15535 15544 29243 29243 0.08152313228515595 LQARNGLK 8 Unmodified _LQARNGLK_ 0 0 0 MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 450.2749328613281 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.374 1 76.952 76.452 77.452 3.5779 0 0 0 0.40625 1 17226 17226 2.3027 0 1 25044 16088 15535 15544 29244 29244 0.08152313228515595 LQARNGLK 8 Unmodified _LQARNGLK_ 0 0 0 MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MER52A_dup1262|chr18:13632153-13633989:-|1.1168544094968555|0.1668938649211965|2.74|149.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 450.27410888671875 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.165 1 76.703 76.203 77.203 3.5373 0 0 0 0.40625 1 17105 17105 2.3027 0 1 25045 16088 15535 15544 29245 29245 0.08152313228515595 LQARRAPLAT 10 Unmodified _LQARRAPLAT_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MSMS UPN46_class_I_Rep_3 1 548.8351440429688 2 548.832914 1095.65128 NaN NaN NaN NaN NaN NaN NaN 29.847 1 29.847 29.347 30.347 0 0 0 0 0.53105 1 4781 4781 3.2813 0.28607 1 25046 2868 15536 15545 29246 29246 0.10727631728400411 LQARWRLI 8 Unmodified _LQARWRLI_ 0 0 0 ENST00000584483.5_1_17:61912248-61912488:-|nuORF ENST00000584483.5_1_17:61912248-61912488:-|nuORF ENST00000584483.5_1_17:61912248-61912488:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 528.32568359375 2 528.327268 1054.63998 0.44792 0.00023665 -1.3744 -0.00072612 -0.92644 -0.00048947 528.3265693302461 64.14 0.17684 67.614 67.491 67.668 3.4743 16 12 2 0 0 0 0.82752 1 14476 14476 2.3027 0.4585 1 80680 25047 7573 15537 15546 29247 29247 0.11484854424952573 LQARWRLI 8 Unmodified _LQARWRLI_ 0 0 0 ENST00000584483.5_1_17:61912248-61912488:-|nuORF ENST00000584483.5_1_17:61912248-61912488:-|nuORF ENST00000584483.5_1_17:61912248-61912488:-|nuORF MSMS UPN48_class_I_Rep_2 6 528.326904296875 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 63.859 1 67.333 66.833 67.833 3.4743 0 0 0 0.4044 1 14390 14390 4.756 1.1595 1 25048 7573 15537 15546 29248 29248 0.11484854424952573 LQATYLLVW 9 Unmodified _LQATYLLVW_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS UPN48_class_I_Rep_1 5 553.8180541992188 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 61.363 1 64.831 64.331 65.331 3.4678 0 0 0 0.3264 1 13646 13646 9.3474 0.75416 1 + 25049 17652 15538 15547 29249 29249 0.06859790516796238 LQAVRSLLQ 9 Unmodified _LQAVRSLLQ_ 0 0 0 MER58B_dup5990|chr17:67402026-67402363:-|1.0450834781552203|0.0237789567599359|5.46|151.0|13|1|anti-sense MER58B_dup5990|chr17:67402026-67402363:-|1.0450834781552203|0.0237789567599359|5.46|151.0|13|1|anti-sense MER58B_dup5990|chr17:67402026-67402363:-|1.0450834781552203|0.0237789567599359|5.46|151.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 514.31640625 2 514.316566 1026.61858 0.32852 0.00016896 -0.69269 -0.00035626 -0.36417 -0.0001873 514.3160799130402 61.492 0.068901 65.005 64.954 65.023 3.5128 6 4 2 0 0 0 0.26468 1 13599 13599 16.149 3.1066 1 79882 25050 16141 15539 15548 29250 29250 0.10633424605589425 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 492.8136291503906 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.296 1 60.79 60.29 61.29 3.4942 0 0 0 0.36705 1 12403 12403 18.135 2.2878 1 + 25051 23966 15540 15549 29251 29251 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 492.81378173828125 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.336 1 60.83 60.33 61.33 3.4942 0 0 0 0.33946 1 12414 12414 24.674 11.166 1 + 25052 23966 15540 15549 29252 29252 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 492.81365966796875 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.461 1 60.955 60.455 61.455 3.4942 0 0 0 0.36705 1 12453 12453 18.135 5.6034 1 + 25053 23966 15540 15549 29253 29253 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 492.813720703125 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.886 1 61.38 60.88 61.88 3.4942 0 0 0 0.38547 1 12581 12581 13.508 0.97634 1 + 25054 23966 15540 15549 29254 29254 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 492.8134460449219 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.206 1 60.72 60.22 61.22 3.5142 0 0 0 0.36705 1 12354 12354 18.135 5.6034 1 + 25055 23966 15540 15549 29255 29255 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 492.8135681152344 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.711 1 61.225 60.725 61.725 3.5142 0 0 0 0.33946 1 12505 12505 24.674 11.166 1 + 25056 23966 15540 15549 29256 29256 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 492.8136901855469 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.838 1 61.353 60.853 61.853 3.5142 0 0 0 0.38547 1 12544 12544 13.508 0.97634 1 + 25057 23966 15540 15549 29257 29257 0.08795538690912963 LQAWILQL 8 Unmodified _LQAWILQL_ 0 0 0 REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense REV__HSMAR2_dup701|chr6:110440788-110442056:+|1.68497011038086|0.0077290514252694|7.77|150.0|53|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 492.813720703125 2 492.797478 983.580402 0.16169 7.9678E-05 1.5685 0.00077297 1.7302 0.00085265 492.7986412990899 57.065 0.075756 60.608 60.542 60.618 3.5427 11 7 2 0 0 0 0.82752 1 12233 12233 18.135 4.6271 1 41439 + 25058 23966 15540 15549 29258 29258 0.08795538690912963 LQCFGWMP 8 Unmodified _LQCFGWMP_ 0 0 0 REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|198|1|anti-sense REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|198|1|anti-sense MSMS UPN47_class_I_Rep_3 4 491.2182922363281 2 491.219691 980.42483 NaN NaN NaN NaN NaN NaN NaN 17.77 1 21.128 20.628 21.628 3.3581 0 0 0 0.40738 1 1357 1357 0.79363 0 1 + 25059 23305 15541 15550 29259 29259 -0.06616571426536666 LQCKHYFY 8 Unmodified _LQCKHYFY_ 0 0 0 Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|20|1|sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|20|1|sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 551.2259521484375 2 551.262945 1100.51134 NaN NaN NaN NaN NaN NaN NaN 20.372 1 20.372 19.872 20.872 0 0 0 0 0.40738 1 2107 2107 0.79363 0 1 25060 33219 15542 15551 29260 29260 -0.0348986860030891 LQCKNISTKH 10 Unmodified _LQCKNISTKH_ 0 0 0 REV__L1MEf_dup1402|chr2:138577535-138578918:-|1.0386490395807078|0.0263272844668924|5.3|151.0|52|3|sense REV__L1MEf_dup1402|chr2:138577535-138578918:-|1.0386490395807078|0.0263272844668924|5.3|151.0|52|3|sense MSMS UPN46_class_I_Rep_3 1 586.5484008789062 2 586.31624 1170.61793 NaN NaN NaN NaN NaN NaN NaN 56.497 1 56.497 55.997 56.997 0 0 0 0 0.53105 1 12327 12327 1.6526 0 1 + 25061 28611 15543 15552 29261 29261 0.03944261894162082 LQCLEQYC 8 Unmodified _LQCLEQYC_ 0 0 0 REV__nc|ENSG00000115306|Q01082-3|SPTBN1 REV__nc|ENSG00000115306|Q01082-3|SPTBN1 MSMS UPN46_class_I_Rep_3 1 499.8389587402344 2 500.217346 998.420138 NaN NaN NaN NaN NaN NaN NaN 25.266 1 25.266 24.766 25.766 0 0 0 0 0.40604 1 3439 3439 2.5775 0 1 + 25062 18555 15544 15553 29262 29262 -0.07913500359961745 LQCPCLTALK 10 Unmodified _LQCPCLTALK_ 0 0 0 L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|5|1|sense;L1PA6_dup2007|chr5:78435234-78441339:-|3.071527030732481|0.1148923742763176|4.74|151.0|81|2|sense;L1PA5_dup4237|chr6:25158198-25164309:+|1.0649315729304478|0.0341158782980119|4.96|149.0|6|1|sense;L1PA3_dup7853|chr11:10173148-10179353:+|1.6721599694215965|0.1198265052135718|3.8|151.0|6|1|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|5|1|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 545.2925415039062 2 545.293388 1088.57222 NaN NaN NaN NaN NaN NaN NaN 25.749 1 29.243 28.743 29.743 3.4945 0 0 0 0.53105 1 3623 3623 1.3295 0.13619 1 25063 14285 15545 15554 29263 29263 0.031479003875801936 LQDRAHSL 8 Unmodified _LQDRAHSL_ 0 0 0 L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|62|3|sense L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|62|3|sense L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|62|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 470.25396728515625 2 470.253966 938.493378 -0.73058 -0.00034356 0.37416 0.00017595 -0.35642 -0.00016761 470.2541426989221 24.768 0.31978 28.119 27.994 28.314 3.3509 38 24 2 0 0 0 0.72333 1 3368 3368 3.5965 0 1 41141 25064 8718 15546 15555 29264 29264 0.021671324691851623 LQDRKVKY 8 Unmodified _LQDRKVKY_ 0 0 0 ENST00000484672.5_1_22:19898593-19905733:-|nuORF;ENST00000496729.2_1_22:19902718-19929326:-|nuORF;nc|ENSG00000184470|Q9NNW7-3|TXNRD2;ENST00000400518.5_2_22:19864636-19919892:-|nuORF;nc|ENSG00000184470|Q9NNW7-2|TXNRD2;ENST00000400525.6_1_22:19864636-19929326:-|nuORF;ENSG00000184470|ENST00000400521|TXNRD2 ENST00000484672.5_1_22:19898593-19905733:-|nuORF ENST00000484672.5_1_22:19898593-19905733:-|nuORF MSMS UPN46_class_I_Rep_3 1 525.30859375 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 44.914 1 44.914 44.414 45.414 0 0 0 0 0.39624 1 9087 9087 9.3474 1.4373 1 25065 5055 15547 15556 29265 29265 0.08057138088520333 LQEIVGKGRF 10 Unmodified _LQEIVGKGRF_ 0 0 0 nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C MULTI-SECPEP UPN47_class_I_Rep_1 2 573.832275390625 2 573.835123 1145.65569 -0.044732 -2.5669E-05 -4.1145 -0.002361 -4.1592 -0.0023867 574.3349513615171 40.065 0.063477 43.732 43.704 43.767 3.6668 5 4 2 0 0 0 0.84575 1 7908 7908 1.3295 0.72803 1 24218 25066 2434 15548 15557 29266 29266 0.08869096151329359 LQELQEAL 8 Unmodified _LQELQEAL_ 0 0 0 nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5 nc|ENSG00000290203|Q96PH1-4|NOX5 nc|ENSG00000290203|Q96PH1-4|NOX5 MULTI-MSMS UPN48_class_I_Rep_2 6 472.25872802734375 2 472.258382 942.502212 0.23788 0.00011234 -0.096775 -4.5703E-05 0.14111 6.6639E-05 472.2582279651877 65.858 0.27305 69.345 69.147 69.42 3.4866 23 17 2 0 0 0 0.82752 1 15013 15013 16.149 0 1 62829 25067 5762 15549 15558 29267 29267 0.028660613149895653 LQEQEKALY 9 Unmodified _LQEQEKALY_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN46_class_I_Rep_3 1 561.2955322265625 2 561.295496 1120.57644 NaN NaN NaN NaN NaN NaN NaN 46.978 1 46.978 46.478 47.478 0 0 0 0 0.2088 1 9675 9675 15.847 1.9411 1 25068 5572 15550 15559 29268 29268 0.02097404406526948 LQEQNTTY 8 Unmodified _LQEQNTTY_ 0 0 0 REV__ENSG00000140743|ENST00000268383|CDR2 REV__ENSG00000140743|ENST00000268383|CDR2 MULTI-MSMS UPN47_class_I_Rep_2 3 498.7352294921875 2 498.735271 995.45599 -0.16464 -8.2112E-05 0.31712 0.00015816 0.15248 7.6049E-05 498.7353054117631 25.123 0.75593 28.606 28.288 29.044 3.483 111 68 2 0 0 0 0.82752 1 3511 3511 3.9444 0.3479 1 101740 + 25069 19355 15551 15560 29269 29269 -0.04192003587115778 LQEQVHYFVT 10 Unmodified _LQEQVHYFVT_ 0 0 0 REV__nc|ENSG00000131373|Q9UJ83-3|HACL1 REV__nc|ENSG00000131373|Q9UJ83-3|HACL1 MSMS UPN46_class_I_Rep_3 1 632.3203735351562 2 632.322045 1262.62954 NaN NaN NaN NaN NaN NaN NaN 64.451 1 64.451 63.951 64.951 0 0 0 0 0.53105 1 14505 14505 1.4819 0.41044 1 + 25070 18975 15552 15561 29270 29270 0.008727821891625354 LQESFSIQL 9 Unmodified _LQESFSIQL_ 0 0 0 REV__L1M5_dup22070|chr6:170384892-170385510:+|1.10635011777097|0.3122162223408046|1.83|151.0|37|2|anti-sense REV__L1M5_dup22070|chr6:170384892-170385510:+|1.10635011777097|0.3122162223408046|1.83|151.0|37|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.7849731445312 2 532.784764 1063.55498 0.522 0.00027811 -0.30495 -0.00016247 0.21705 0.00011564 532.7844448295175 54.071 0.48933 57.653 57.407 57.896 3.5817 50 30 2 0 0 0 0.279 2 11378 11378;11427 15.248 2.7169 1 113650 + 25071 24637 15553 15562 29271;29272 29271 0.025740193778119647 LQFAEACH 8 Unmodified _LQFAEACH_ 0 0 0 REV__L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|214|2|anti-sense REV__L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|214|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 459.2200012207031 2 459.710545 917.406537 0.17759 8.164E-05 -0.19069 -8.7661E-05 -0.013096 -6.0205E-06 459.7105517554397 97.008 0.19711 100.79 100.74 100.94 3.7804 37 24 2 0 0 0 0.72333 1 23084 23084 2.5775 0 1 115450 + 25072 24995 15554 15563 29273 29273 -0.055469900769026026 LQFGAALGGQ 10 Unmodified _LQFGAALGGQ_ 0 0 0 REV__ENST00000591239.1_1_19:10252595-10252844:-|nuORF REV__ENST00000591239.1_1_19:10252595-10252844:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 480.77191162109375 2 481.258717 960.50288 0.099656 4.796E-05 0.17449 8.3974E-05 0.27414 0.00013193 481.2589323554113 34.068 0.44596 34.068 33.893 34.339 0 49 32 2 0 0 0 0.84575 1 6111 6111 3.2813 0.28607 1 85590 + 25073 23166 15555 15564 29274 29274 0.021049007547162546 LQFPFLFSY 9 Unmodified _LQFPFLFSY_ 0 0 0 REV__L1ME4c_dup3641|chr7:37176428-37176820:+|1.4675640331541393|0.0070384797168334|7.7|151.0|18|1|anti-sense REV__L1ME4c_dup3641|chr7:37176428-37176820:+|1.4675640331541393|0.0070384797168334|7.7|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 581.3027954101562 2 581.302593 1160.59063 NaN NaN NaN NaN NaN NaN NaN 101.85 1 105.47 104.97 105.97 3.612 0 0 0 0.38639 1 24577 24577 3.9444 0 1 + 25074 28315 15556 15565 29275 29275 0.016761016254804417 LQGVNGEMVL 10 Unmodified _LQGVNGEMVL_ 0 0 0 HEATR1|p.E1108Kfs*21|1|0.04|ENSG00000119285|chr1:236574669-236574669|G/-|frameshift_variant;HEATR1|p.T1952Lfs*8|1|0.09|ENSG00000119285|chr1:236555365-236555366|-/AA|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1 HEATR1|p.E1108Kfs*21|1|0.04|ENSG00000119285|chr1:236574669-236574669|G/-|frameshift_variant HEATR1|p.E1108Kfs*21|1|0.04|ENSG00000119285|chr1:236574669-236574669|G/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 530.279052734375 2 530.278792 1058.54303 0.30727 0.00016294 0.76061 0.00040334 1.0679 0.00056628 530.2790699558651 66.502 0.51788 69.86 69.587 70.104 3.3576 43 34 2 0 0 0 0.55148 1 15868 15868 5.2969 0.066215 1 95575 25075 2276 15557 15566 29276 29276 0.016100793629675536 LQHKSFILLI 10 Unmodified _LQHKSFILLI_ 0 0 0 REV__L1PA5_dup4651|chr6:109133557-109136577:+|2.4726812952911845|0.2483712713893377|3.32|151.0|185|3|anti-sense REV__L1PA5_dup4651|chr6:109133557-109136577:+|2.4726812952911845|0.2483712713893377|3.32|151.0|185|3|anti-sense MSMS UPN46_class_I_Rep_3 1 404.5889892578125 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 41.789 1 41.789 41.289 42.289 0 0 0 0 0.53105 1 8220 8220 1.9064 0 1 + 25076 28857 15558 15567 29277 29277 0.14683716741956232 LQHLELLLAFL 11 Unmodified _LQHLELLLAFL_ 0 0 0 L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|89|1|anti-sense L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|89|1|anti-sense L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|89|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 437.26751708984375 3 437.267463 1308.78056 -0.33898 -0.00014823 1.0849 0.00047437 0.74588 0.00032615 437.2677958181685 50.033 0.42613 53.259 53.019 53.445 3.2262 35 24 2 0 0 0 0.68081 1 10982 10982 0.45452 0 1 82027 25077 15278 15559 15568 29278 29278 0.1385196856786024 LQHPDVAAY 9 Unmodified _LQHPDVAAY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS UPN46_class_I_Rep_3 1 507.2552795410156 2 507.256174 1012.49779 0.30509 0.00015476 -0.53899 -0.00027341 -0.2339 -0.00011864 507.2558569693603 41.501 0.51124 41.501 41.167 41.679 0 79 50 2 0 0 0 0.17897 1 8140 8140 22.736 6.8891 1 135880 25078 879 15560 15569 29279 29279 -0.007954031079179913 LQHQCALSLR 10 Unmodified _LQHQCALSLR_ 0 0 0 nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5 nc|ENSG00000151208|Q8TDM6-2|DLG5 nc|ENSG00000151208|Q8TDM6-2|DLG5 MULTI-SECPEP UPN46_class_I_Rep_3 1 584.3172607421875 2 584.816407 1167.61826 0.46888 0.00027421 3.8605 0.0022577 4.3294 0.0025319 584.818045351359 66.278 0.11987 66.278 66.204 66.324 0 15 12 2 0 0 0 0.84575 1 15025 15025 1.4819 0.68827 1 93011 25079 3580 15561 15570 29280 29280 0.04115681614052846 LQHRALIRS 9 Unmodified _LQHRALIRS_ 0 0 0 REV__ENST00000344312.5_1_13:33850330-33859775:-|nuORF REV__ENST00000344312.5_1_13:33850330-33859775:-|nuORF MSMS UPN47_class_I_Rep_1 2 547.332763671875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 68.931 1 72.299 71.799 72.799 3.3678 0 0 0 0.39598 1 16672 16672 1.6526 0 1 + 25080 19051 15562 15571 29281 29281 0.10899051448268438 LQHTAQSPFL 10 Unmodified _LQHTAQSPFL_ 0 0 0 REV__nc|ENSG00000123358|P22736-2|NR4A1 REV__nc|ENSG00000123358|P22736-2|NR4A1 MULTI-MSMS UPN48_class_I_Rep_2 6 571.3035888671875 2 571.303655 1140.59276 0.53579 0.0003061 -0.21807 -0.00012458 0.31772 0.00018152 571.3034637217532 52.818 1.0686 56.427 56.063 57.132 3.6098 174 69 3 0 0 0 0.53004 1 11195 11195 8.1555 0 1 1242100 + 25081 18778 15563 15572 29282 29282 0.028085303632678915 LQIIRQLENNI 11 Unmodified _LQIIRQLENNI_ 0 0 0 ENST00000609471.1_1_9:139694564-139695182:+|nuORF;nc|ENSG00000213213|Q5T5S1-3|CCDC183;ENST00000415992.5_1_9:139693810-139699267:+|nuORF;nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF;nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183 ENST00000609471.1_1_9:139694564-139695182:+|nuORF ENST00000609471.1_1_9:139694564-139695182:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 451.9327392578125 3 451.933143 1352.7776 0.050268 2.2718E-05 -1.1708 -0.00052914 -1.1206 -0.00050643 451.932558237856 103.18 0.12617 106.71 106.63 106.76 3.5231 30 17 2 0 0 0 0.68024 1 25080 25080 0.50596 0.09769 1 94648 25082 5585 15564 15573 29283 29283 0.11532093443042868 LQIKSYYKKF 10 Unmodified _LQIKSYYKKF_ 0 0 0 REV__L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|41|2|sense REV__L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|41|2|sense MSMS UPN48_class_I_Rep_2 6 439.9253234863281 3 439.923696 1316.74926 NaN NaN NaN NaN NaN NaN NaN 99.772 1 103.53 103.03 104.03 3.7575 0 0 0 0.53105 1 23698 23698 3.3196 0.47636 1 + 25083 29240 15565 15574 29284 29284 0.10355395533724732 LQIKTDKSV 9 Unmodified _LQIKTDKSV_ 0 0 0 REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6 REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6 MSMS UPN47_class_I_Rep_3 4 516.3092651367188 2 516.308406 1030.60226 NaN NaN NaN NaN NaN NaN NaN 97.278 1 100.7 100.2 101.2 3.4216 0 0 0 0.3967 1 24118 24118 1.4819 0.79152 1 + 25084 17892 15566 15575 29285 29285 0.0881829864881638 LQIKTKYA 8 Unmodified _LQIKTKYA_ 0 0 0 REV__L1PB1_dup6199|chr7:156874575-156877601:+|3.309036183648861|0.0663738885294328|5.64|151.0|43|2|sense REV__L1PB1_dup6199|chr7:156874575-156877601:+|3.309036183648861|0.0663738885294328|5.64|151.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 482.7956237792969 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 62.43 1 62.43 61.93 62.93 0 0 0 0 0.40625 1 13955 13955 2.3027 0 1 + 25085 30461 15567 15576 29286 29286 0.09207234828272703 LQINRVFY 8 Unmodified _LQINRVFY_ 0 0 0 REV__Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|63|2|anti-sense REV__Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_2 3 526.797607421875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 17.242 1 20.629 20.129 21.129 3.387 0 0 0 0.40604 1 1252 1252 2.5775 0.27475 1 + 25086 17406 15568 15577 29287 29287 0.05773753059816045 LQIRLWLKG 9 Unmodified _LQIRLWLKG_ 0 0 0 Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|50|1|anti-sense Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|50|1|anti-sense Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|50|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3594970703125 2 563.858401 1125.70225 0.40984 0.00023109 -1.3897 -0.00078358 -0.97983 -0.00055249 564.3588428600492 78.861 0.22276 82.307 82.2 82.423 3.4456 27 19 2 0 0 0 0.50088 1 19604 19604 0.52476 0 1 132910 25087 33215 15569 15578 29288 29288 0.14442580773243208 LQIRYPIR 8 Unmodified _LQIRYPIR_ 0 0 0 L1MB7_dup17990|chr15:40299679-40300063:+|1.3617148386776432|0.0656332381873994|4.37|151.0|8|2|sense L1MB7_dup17990|chr15:40299679-40300063:+|1.3617148386776432|0.0656332381873994|4.37|151.0|8|2|sense L1MB7_dup17990|chr15:40299679-40300063:+|1.3617148386776432|0.0656332381873994|4.37|151.0|8|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 530.2611083984375 2 529.827101 1057.63965 0.40037 0.00021213 -0.36624 -0.00019404 0.034134 1.8085E-05 529.8267735806756 50.694 0.60128 54.362 54.114 54.716 3.6679 53 35 2 0 0 0 0.72333 1 10352 10352 9.3474 0 1 98476 25088 10754 15570 15579 29289 29289 0.11313434705061809 LQISRLSLS 9 Unmodified _LQISRLSLS_ 0 0 0 L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense;L1PA10_dup6667|chr19:21733593-21735237:+|1.4267130329379532|0.1242960747166632|3.52|151.0|17|2|sense L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 508.8084716796875 2 508.808574 1015.60259 0.18893 9.6129E-05 0.075609 3.847E-05 0.26454 0.0001346 508.8085734114053 55.31 0.47506 58.788 58.554 59.029 3.4785 35 28 2 0 0 0 0.19147 1 12548 12548 21.537 0 1 109730 25089 13628 15571 15580 29290 29290 0.09541718368666352 LQISRLSLS 9 Unmodified _LQISRLSLS_ 0 0 0 L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense;L1PA10_dup6667|chr19:21733593-21735237:+|1.4267130329379532|0.1242960747166632|3.52|151.0|17|2|sense L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 508.808574 1015.60259 0.18893 9.6129E-05 0.075609 3.847E-05 0.26454 0.0001346 508.8085734114053 55.31 0.47506 58.788 58.554 59.029 3.4785 -0.096011 0.00012758 NaN 21.537 35 28 2 NaN NaN NaN NaN 0 NaN NaN 0 109730 25090 13628 15571 15580 0.09541718368666352 LQISRLSLS 9 Unmodified _LQISRLSLS_ 0 0 0 L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense;L1PA10_dup6667|chr19:21733593-21735237:+|1.4267130329379532|0.1242960747166632|3.52|151.0|17|2|sense L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense L1PA10_dup6646|chr19:21046337-21047970:-|1.3751843417128908|0.0545586679111942|4.66|150.0|13|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 508.808574 1015.60259 0.22867 0.00011635 -0.0069478 -3.5351E-06 0.22172 0.00011281 508.808563302046 55.79 0.60957 58.968 58.719 59.329 3.1779 0.083477 4.357E-05 NaN 21.537 58 41 2 NaN NaN NaN NaN 0 NaN NaN 0 105690 25091 13628 15571 15580 0.09541718368666352 LQKAGLVRK 9 Unmodified _LQKAGLVRK_ 0 0 0 nc|ENSG00000084112|Q8WYL5-4|SSH1;ENSG00000084112|ENST00000326495|SSH1 nc|ENSG00000084112|Q8WYL5-4|SSH1 nc|ENSG00000084112|Q8WYL5-4|SSH1 MULTI-MSMS UPN48_class_I_Rep_1 5 506.8349609375 2 506.834926 1011.6553 0.24316 0.00012324 -0.1916 -9.7111E-05 0.051557 2.6131E-05 506.83474329909467 53.377 1.1642 56.897 56.527 57.691 3.5192 139 84 3 0 0 0 0.46434 1 11228 11228 4.3292 0 1 517840 25092 1252 15572 15581 29291 29291 0.1499372122211753 LQKALITM 8 Unmodified _LQKALITM_ 0 0 0 REV__L1MA4_dup1714|chr3:81753954-81755847:+|1.0403062367827562|0.1950571764518732|2.42|150.0|3|1|sense REV__L1MA4_dup1714|chr3:81753954-81755847:+|1.0403062367827562|0.1950571764518732|2.42|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 459.27960205078125 2 459.278063 916.541574 NaN NaN NaN NaN NaN NaN NaN 84.149 1 84.149 83.649 84.649 0 0 0 0 0.40604 1 20008 20008 2.5775 0 1 + 25093 25138 15573 15582 29292 29292 0.07996490064863337 LQKAVLND 8 Unmodified _LQKAVLND_ 0 0 0 REV__ENSG00000077063|ENST00000160373|CTTNBP2 REV__ENSG00000077063|ENST00000160373|CTTNBP2 MSMS UPN48_class_I_Rep_2 6 450.7606506347656 2 450.761092 899.507631 NaN NaN NaN NaN NaN NaN NaN 115.07 1 118.73 118.23 119.23 3.6616 0 0 0 0.40746 1 27530 27530 0.69038 0 1 + 25094 17874 15574 15583 29293 29293 0.0538578489745305 LQKCFIKT 8 Unmodified _LQKCFIKT_ 0 0 0 nc|ENSG00000000005|Q9H2S6-2|TNMD;nc|ENSG00000000005|Q9H2S6-3|TNMD;ENSG00000000005|ENST00000373031|TNMD nc|ENSG00000000005|Q9H2S6-2|TNMD nc|ENSG00000000005|Q9H2S6-2|TNMD MSMS UPN47_class_I_Rep_3 4 490.7830810546875 2 490.783513 979.552473 NaN NaN NaN NaN NaN NaN NaN 54.934 1 58.112 57.612 58.612 3.1779 0 0 0 0.40472 1 12513 12513 4.3292 0.38484 1 25095 663 15575 15584 29294 29294 0.06187892439152165 LQKDLKHN 8 Unmodified _LQKDLKHN_ 0 0 0 REV__ENSG00000215186|ENST00000421285|GOLGA6B;REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF REV__ENSG00000215186|ENST00000421285|GOLGA6B MSMS UPN47_class_I_Rep_2 3 498.2835693359375 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 30.884 1 34.366 33.866 34.866 3.4821 0 0 0 0.40625 1 5154 5154 2.3027 0 1 + 25096 19865;23038 15576 15585 29295 29295 0.058482785373598745 LQKEPLLFS 9 Unmodified _LQKEPLLFS_ 0 0 0 nc|ENSG00000167889|Q3V5L5-2|MGAT5B;ENST00000563153.5_1_17:74940311-74944917:+|nuORF;ENST00000568598.1_1_17:74942385-74944917:+|nuORF;nc|ENSG00000167889|Q3V5L5-5|MGAT5B;ENSG00000167889|ENST00000569840|MGAT5B nc|ENSG00000167889|Q3V5L5-2|MGAT5B nc|ENSG00000167889|Q3V5L5-2|MGAT5B MULTI-MSMS UPN47_class_I_Rep_2 3 538.3153076171875 2 537.813325 1073.6121 0.57923 0.00031152 -0.55168 -0.0002967 0.027553 1.4818E-05 537.8128658368768 108.81 0.50334 112.34 112.16 112.66 3.5333 107 56 2 0 0 0 0.42249 1 26468 26468 6.7232 0 1 9088800 25097 16743 15577 15586 29296 29296 0.07823486654183398 LQKESKKTP 9 Unmodified _LQKESKKTP_ 0 0 0 REV__ENST00000550352.1_1_12:102179766-102183828:-|nuORF REV__ENST00000550352.1_1_12:102179766-102183828:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 529.8143920898438 2 529.813856 1057.61316 -0.3444 -0.00018247 0.74323 0.00039377 0.39883 0.00021131 529.8143365817253 23.781 0.6213 27.132 26.852 27.473 3.3509 67 48 2 0 0 0 0.49187 1 3024 3024 1.4819 0.28856 1 69686 + 25098 18461 15578 15587 29297 29297 0.0866570102307378 LQKFLLPLVHL 11 Unmodified _LQKFLLPLVHL_ 0 0 0 L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|215|1|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|215|1|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|215|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 440.79913330078125 3 440.951586 1319.83293 0.15259 6.7287E-05 1.598 0.00070464 1.7506 0.00077193 440.95189688502705 65.458 0.50301 68.937 68.779 69.282 3.4792 40 35 3 0 0 0 22.551 1 14856 14856 1.3296 0.55311 1 96075 25099 14575 15579 15588 29298 29298 0.18580551701461445 LQKGVRKN 8 Unmodified _LQKGVRKN_ 0 0 0 REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 MSMS UPN46_class_I_Rep_3 1 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 35.351 1 35.351 34.851 35.851 0 0 0 0 0.40746 1 6425 6425 0.69038 0 1 + 25100 18893 15580 15589 29299 29299 0.1039228863688777 LQKHIVFYR 9 Unmodified _LQKHIVFYR_ 0 0 0 REV__MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|62|2|sense REV__MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|62|2|sense MSMS UPN47_class_I_Rep_2 3 602.2767333984375 2 602.353483 1202.69241 NaN NaN NaN NaN NaN NaN NaN 76.794 1 80.125 79.625 80.625 3.3315 0 0 0 0.4007 1 19021 19021 0.52476 0 1 + 25101 31286 15581 15590 29300 29300 0.09917392767874844 LQKHRINKN 9 Unmodified _LQKHRINKN_ 0 0 0 REV__L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|29|2|sense REV__L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 575.8432006835938 2 575.843813 1149.67307 NaN NaN NaN NaN NaN NaN NaN 83.949 1 87.63 87.13 88.13 3.6814 0 0 0 0.39518 1 19970 19970 1.8442 0 1 + 25102 27528 15582 15591 29301 29301 0.10422436476983421 LQKIKILPRRG 11 Unmodified _LQKIKILPRRG_ 0 0 0 AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|10|3|sense AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|10|3|sense AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|10|3|sense MSMS UPN48_class_I_Rep_1 5 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.761 1 66.224 65.724 66.724 3.4625 0 0 0 0.38417 1 14073 14073 0.40827 0 1 25103 37 15583 15592 29302 29302 0.22417277055797058 LQKIKILPRRG 11 Unmodified _LQKIKILPRRG_ 0 0 0 AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|10|3|sense AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|10|3|sense AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.437 1 29.073 28.573 29.573 3.6363 0 0 0 0.38417 1 3099 3099 0.094841 0 1 25104 37 15583 15592 29303 29303 0.22417277055797058 LQKKKILR 8 Unmodified _LQKKKILR_ 0 0 0 L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|58|1|sense L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|58|1|sense L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|58|1|sense MSMS UPN47_class_I_Rep_3 4 513.8599243164062 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 16.956 1 20.318 19.818 20.818 3.3619 0 0 0 0.40746 1 1152 1152 0.69038 0 1 25105 15012 15584 15593 29304 29304 0.19550884635873444 LQKKKKKKISR 11 Unmodified _LQKKKKKKISR_ 0 0 0 AluJb_dup50812|chr7:101994808-101995120:+|1.3142155121996075|0.0097707590132619|7.07|151.0|6|2|sense AluJb_dup50812|chr7:101994808-101995120:+|1.3142155121996075|0.0097707590132619|7.07|151.0|6|2|sense AluJb_dup50812|chr7:101994808-101995120:+|1.3142155121996075|0.0097707590132619|7.07|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 462.3211364746094 3 462.320672 1383.94019 NaN NaN NaN NaN NaN NaN NaN 107.6 1 111.14 110.64 111.64 3.5345 0 0 0 0.38417 1 26040 26040 0.094841 0.011491 1 25106 52 15585 15594 29305 29305 0.2635752163569123 LQKKLRLN 8 Unmodified _LQKKLRLN_ 0 0 0 ENSG00000134013|ENST00000389131|LOXL2 ENSG00000134013|ENST00000389131|LOXL2 ENSG00000134013|ENST00000389131|LOXL2 MULTI-MSMS UPN48_class_I_Rep_2 6 506.8348693847656 2 506.834926 1011.6553 0.37728 0.00019122 -0.27871 -0.00014126 0.098569 4.9958E-05 506.8346908244488 53.305 1.0324 56.915 56.525 57.558 3.6098 138 70 3 0 0 0 0.82752 1 11097 11097 8.5933 0 1 557270 25107 2828 15586 15595 29306 29306 0.1499372122211753 LQKKSMKL 8 Unmodified _LQKKSMKL_ 0 0 0 Tigger1_dup11514|chr20:8385972-8387738:-|5.070867112938558|0.0194549401565531|8.03|151.0|44|3|sense Tigger1_dup11514|chr20:8385972-8387738:-|5.070867112938558|0.0194549401565531|8.03|151.0|44|3|sense Tigger1_dup11514|chr20:8385972-8387738:-|5.070867112938558|0.0194549401565531|8.03|151.0|44|3|sense MSMS UPN48_class_I_Rep_1 5 488.3057556152344 2 488.304613 974.594672 NaN NaN NaN NaN NaN NaN NaN 62.633 1 66.096 65.596 66.596 3.4625 0 0 0 0.40625 1 14034 14034 2.3027 0 1 25108 33019 15587 15596 29307 29307 0.10635867847543068 LQKNIVKGRVN 11 Unmodified _LQKNIVKGRVN_ 0 0 0 Tigger1_dup9435|chr13:21437990-21439145:+|4.952046014768474|0.0460245562216282|6.75|151.0|25|2|sense Tigger1_dup9435|chr13:21437990-21439145:+|4.952046014768474|0.0460245562216282|6.75|151.0|25|2|sense Tigger1_dup9435|chr13:21437990-21439145:+|4.952046014768474|0.0460245562216282|6.75|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 634.8925170898438 2 634.893503 1267.77245 NaN NaN NaN NaN NaN NaN NaN 102.36 1 102.36 101.86 102.86 0 0 0 0 0.22906 1 24979 24979 16.149 0 1 25109 33211 15588 15597 29308 29308 0.14927834371087556 LQKNKKKRKKK 11 Unmodified _LQKNKKKRKKK_ 0 0 0 REV__L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|5|1|sense REV__L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 476.3267822265625 3 476.327938 1425.96199 NaN NaN NaN NaN NaN NaN NaN 109.78 1 113.41 112.91 113.91 3.6326 0 0 0 0.38417 1 26663 26663 0.08335 0.010087 1 + 25110 28925 15589 15598 29309 29309 0.26604326384222077 LQKPLSAR 8 Unmodified _LQKPLSAR_ 0 0 0 HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|152|3|sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|152|3|sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|152|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.78448486328125 2 456.784902 911.55525 -0.42166 -0.00019261 -0.43837 -0.00020024 -0.86003 -0.00039285 456.78450172383396 16.375 0.55696 19.897 19.656 20.213 3.5224 108 63 2 0 0 0 0.82752 1 1037 1037 1.8442 0 1 59233 25111 8181 15590 15599 29310 29310 0.09593483888306764 LQKRLPQG 8 Unmodified _LQKRLPQG_ 0 0 0 REV__L1MB3_dup16476|chr20:35405849-35406989:+|1.2476832223946344|0.1230638956869024|3.34|151.0|44|3|sense REV__L1MB3_dup16476|chr20:35405849-35406989:+|1.2476832223946344|0.1230638956869024|3.34|151.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 470.2893371582031 2 470.290351 938.566149 -0.76127 -0.00035802 0.3602 0.0001694 -0.40107 -0.00018862 470.29030710969914 22.699 0.85733 26.05 25.74 26.598 3.3503 134 74 2 0 0 0 0.82752 1 2706 2706 2.3027 0 1 150100 + 25112 25840 15591 15600 29311 29311 0.09440886262609638 LQKRPQGLS 9 Unmodified _LQKRPQGLS_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145654528-145657901:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MSMS UPN47_class_I_Rep_2 3 513.7770385742188 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 88.237 1 91.684 91.184 92.184 3.4471 0 0 0 0.38639 1 21944 21944 3.9444 0 1 25113 3892 15592 15601 29312 29312 0.08640253945759468 LQKSALAKEA 10 Unmodified _LQKSALAKEA_ 0 0 0 REV__nc|ENSG00000123240|Q96CV9-3|OPTN REV__nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-MSMS UPN47_class_I_Rep_3 4 529.8136596679688 2 529.813856 1057.61316 -0.3444 -0.00018247 0.74323 0.00039377 0.39883 0.00021131 529.8143365817253 23.781 0.6213 27.132 26.852 27.473 3.3509 67 48 2 0 0 0 0.56189 1 3063 3063 2.4985 0.65425 1 69686 + 25114 18777 15593 15602 29313 29313 0.0866570102307378 LQKSLYFNQ 9 Unmodified _LQKSLYFNQ_ 0 0 0 REV__nc|ENSG00000122966|O14578-3|CIT REV__nc|ENSG00000122966|O14578-3|CIT MULTI-MSMS UPN48_class_I_Rep_2 6 570.8067626953125 2 570.806031 1139.59751 0.60619 0.00034602 0.36871 0.00021046 0.9749 0.00055648 570.8063686471123 55.793 0.47583 59.349 58.989 59.465 3.5559 49 30 2 0 0 0 0.48846 1 11913 11913 1.8442 0.19162 1 114770 + 25115 18768 15594 15603 29314 29314 0.033294145060153824 LQKTVMIPP 9 Unmodified _LQKTVMIPP_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN47_class_I_Rep_3 4 513.8068237304688 2 513.804445 1025.59434 NaN NaN NaN NaN NaN NaN NaN 88.368 1 91.755 91.255 92.255 3.3873 0 0 0 0.39598 1 22163 22163 1.6526 0.85899 1 + 25116 21014 15595 15604 29315 29315 0.08256448127667682 LQKTVMIPP 9 Unmodified _LQKTVMIPP_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS UPN48_class_I_Rep_1 5 513.8050537109375 2 513.804445 1025.59434 0.2485 0.00012768 1.2387 0.00063643 1.4872 0.00076411 513.8051707417521 88.132 0.24064 91.755 91.648 91.888 3.6229 36 23 2 0 0 0 0.49026 1 21157 21157 1.6526 0.85899 1 193880 + 25117 21014 15595 15604 29316 29316 0.08256448127667682 LQKTVMIPP 9 Unmodified _LQKTVMIPP_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN48_class_I_Rep_3 7 513.8055419921875 2 513.804445 1025.59434 NaN NaN NaN NaN NaN NaN NaN 87.76 1 91.571 91.071 92.071 3.8104 0 0 0 0.39598 1 20825 20825 1.6526 0.85899 1 + 25118 21014 15595 15604 29317 29317 0.08256448127667682 LQKTYSKY 8 Unmodified _LQKTYSKY_ 0 0 0 L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|39|2|sense L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|39|2|sense L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|39|2|sense MSMS UPN46_class_I_Rep_3 1 515.7801513671875 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 40.111 1 40.111 39.611 40.611 0 0 0 0 0.36226 1 7766 7766 19.257 3.4098 1 25119 12701 15596 15605 29318 29318 0.035903405860153725 LQKWLYYF 8 Unmodified _LQKWLYYF_ 0 0 0 L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|87|1|anti-sense L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|87|1|anti-sense L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|87|1|anti-sense MSMS UPN48_class_I_Rep_3 7 580.8095703125 2 580.810585 1159.60662 NaN NaN NaN NaN NaN NaN NaN 65.667 1 69.175 68.675 69.675 3.5077 0 0 0 0.39819 1 14857 14857 8.5933 1.304 1 25120 11254 15597 15606 29319 29319 0.03319807862339985 LQLACRRPSA 10 Unmodified _LQLACRRPSA_ 0 0 0 REV__ENST00000164640.8_1_X:153068091-153068391:-|nuORF REV__ENST00000164640.8_1_X:153068091-153068391:-|nuORF MSMS UPN46_class_I_Rep_3 1 557.8128051757812 2 557.811125 1113.6077 NaN NaN NaN NaN NaN NaN NaN 63.26 1 63.26 62.76 63.76 0 0 0 0 0.53105 1 14196 14196 1.4819 0.79152 1 + 25121 21464 15598 15607 29320 29320 0.055436989596273634 LQLAEIVPS 9 Unmodified _LQLAEIVPS_ 0 0 0 AluSq10_dup414|chr3:177030830-177031141:+|1.05418454633119|0.3197980775033787|1.72|150.0|3|1|sense AluSq10_dup414|chr3:177030830-177031141:+|1.05418454633119|0.3197980775033787|1.72|150.0|3|1|sense AluSq10_dup414|chr3:177030830-177031141:+|1.05418454633119|0.3197980775033787|1.72|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 485.28570556640625 2 485.2844 968.554247 NaN NaN NaN NaN NaN NaN NaN 37.043 1 40.746 40.246 41.246 3.7021 0 0 0 0.39598 1 6294 6294 1.6526 0 1 25122 246 15599 15608 29321 29321 0.06871224728763536 LQLDPCTCDY 10 Unmodified _LQLDPCTCDY_ 0 0 0 nc|ENSG00000174226|Q8N9S9-2|SNX31;ENSG00000174226|ENST00000311812|SNX31 nc|ENSG00000174226|Q8N9S9-2|SNX31 nc|ENSG00000174226|Q8N9S9-2|SNX31 MSMS UPN48_class_I_Rep_3 7 585.7457885742188 2 585.743924 1169.4733 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.28 115.78 116.78 3.6614 0 0 0 0.53105 1 26758 26758 1.4819 0.68827 1 25123 4670 15600 15609 29322 29322 -0.10466167367962953 LQLFLSANQI 10 Unmodified _LQLFLSANQI_ 0 0 0 REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF MSMS UPN46_class_I_Rep_3 1 573.8292846679688 2 573.829506 1145.64446 NaN NaN NaN NaN NaN NaN NaN 74.519 1 74.519 74.019 75.019 0 0 0 0 0.53105 1 17289 17289 57.722 2.9484 1 + 25124 22912 15601 15610 29323 29323 0.07746274057171831 LQLGKKNPRNV 11 Unmodified _LQLGKKNPRNV_ 0 0 0 ENST00000381340.7_1_12:26491267-26491405:-|nuORF ENST00000381340.7_1_12:26491267-26491405:-|nuORF ENST00000381340.7_1_12:26491267-26491405:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 422.59246826171875 3 422.926211 1265.7568 0.15462 6.5392E-05 1.3464 0.00056944 1.501 0.00063483 422.92671906383237 60.162 0.29482 63.649 63.526 63.821 3.4868 29 23 2 0 0 0 22.551 1 13269 13269 1.2148 0.4383 1 336810 25125 6495 15602 15611 29324 29324 0.13455547854027827 LQLILWPGIW 10 Unmodified _LQLILWPGIW_ 0 0 0 L1ME1_dup21946|chr12:3783607-3784266:-|1.0366965944079156|0.0734604447521975|3.82|151.0|39|3|anti-sense L1ME1_dup21946|chr12:3783607-3784266:-|1.0366965944079156|0.0734604447521975|3.82|151.0|39|3|anti-sense L1ME1_dup21946|chr12:3783607-3784266:-|1.0366965944079156|0.0734604447521975|3.82|151.0|39|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 619.86962890625 2 619.868434 1237.72232 0.49176 0.00030482 1.3059 0.00080946 1.7976 0.0011143 619.8691465144411 87.572 0.32455 91.3 91.211 91.536 3.7279 46 36 2 0 0 0 0.56478 1 20819 20819 0.45834 0 1 172490 25126 12301 15603 15612 29325 29325 0.11296331713219843 LQLKTHIL 8 Unmodified _LQLKTHIL_ 0 0 0 REV__L1MA5_dup4362|chr22:22282823-22283481:-|2.832374099337222|0.2051198631412667|3.79|151.0|22|3|sense REV__L1MA5_dup4362|chr22:22282823-22283481:-|2.832374099337222|0.2051198631412667|3.79|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.31072998046875 2 483.310752 964.606951 -0.28058 -0.00013561 0.41899 0.0002025 0.1384 6.6892E-05 483.31072956421434 39.026 0.56228 42.692 42.471 43.033 3.6652 42 34 2 0 0 0 0.82752 1 7641 7641 2.5775 0 1 51796 + 25127 25402 15604 15613 29326 29326 0.1232322758223745 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8121337890625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.101 1 75.481 74.981 75.981 3.3799 0 0 0 0.40746 1 17621 17621 0.69038 0 1 25128 14224 15605 15614 29327 29327 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81207275390625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 79.125 1 82.571 82.071 83.071 3.4456 0 0 0 0.40746 1 19701 19701 0.69038 0 1 25129 14224 15605 15614 29328 29328 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8118591308594 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 81 1 84.487 83.987 84.987 3.4874 0 0 0 0.40746 1 20198 20198 0.69038 0 1 25130 14224 15605 15614 29329 29329 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8116149902344 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 98.335 1 102.12 101.62 102.62 3.7861 0 0 0 0.40746 1 24345 24345 0.69038 0 1 25131 14224 15605 15614 29330 29330 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 485.8114013671875 2 485.811451 969.608348 0.12058 5.858E-05 3.6248 0.0017609 3.7453 0.0018195 485.8117702091249 64.63 0.24058 67.985 67.896 68.137 3.3557 47 22 3 0 0 0 0.72333 1 15401 15401 0.69038 0 1 138390 25132 14224 15605 15614 29331 29331 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8119812011719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.038 1 75.328 74.828 75.828 3.2899 0 0 0 0.40746 1 17639 17639 0.69038 0 1 25133 14224 15605 15614 29332 29332 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 102.66 1 106.19 105.69 106.69 3.5231 0 0 0 0.40746 1 24984 24984 0.69038 0 1 25134 14224 15605 15614 29333 29333 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8118591308594 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 103.14 1 106.67 106.17 107.17 3.5231 0 0 0 0.40746 1 25082 25082 0.69038 0 1 25135 14224 15605 15614 29334 29334 0.12232861670997863 LQLLARRT 8 Unmodified _LQLLARRT_ 0 0 0 L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 99.306 1 102.74 102.24 103.24 3.4328 0 0 0 0.40746 1 24562 24562 0.69038 0 1 25136 14224 15605 15614 29335 29335 0.12232861670997863 LQLLLFGHLAS 11 Unmodified _LQLLLFGHLAS_ 0 0 0 L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|379|3|anti-sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|379|3|anti-sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|379|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3609619140625 2 606.360973 1210.70739 0.2612 0.00015838 0.81439 0.00049381 1.0756 0.00065219 606.3609423611189 26.134 0.097965 26.134 26.114 26.212 0 14 4 6 0 0 0 0.67113 1 3701 3701 1.3295 0 1 225810 25137 14863 15606 15615 29336 29336 0.11046839845243994 LQLLQQQQL 9 Unmodified _LQLLQQQQL_ 0 0 0 REV__ENST00000498156.5_1_9:130948054-130953136:-|nuORF REV__ENST00000498156.5_1_9:130948054-130953136:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 556.3273315429688 2 556.327131 1110.63971 0.517 0.00028762 -0.65638 -0.00036516 -0.13938 -7.754E-05 556.3267576608664 53.85 0.53802 57.169 56.952 57.49 3.3187 70 33 3 0 0 0 0.30034 1 12174 12174 13.906 1.6654 1 101510 + 25138 19584 15607 15616 29337 29337 0.08881389914404281 LQLLQRATLDP 11 Unmodified _LQLLQRATLDP_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS UPN46_class_I_Rep_3 1 634.8611450195312 2 634.372069 1266.72959 NaN NaN NaN NaN NaN NaN NaN 94.112 1 94.112 93.612 94.612 0 0 0 0 0.38417 1 22826 22826 1.1933 0.79263 1 25139 5784 15608 15617 29338 29338 0.10689019522988019 LQLNIKSQKK 10 Unmodified _LQLNIKSQKK_ 0 0 0 REV__L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|34|3|sense REV__L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|34|3|sense MSMS UPN47_class_I_Rep_1 2 600.37646484375 2 600.377155 1198.73976 NaN NaN NaN NaN NaN NaN NaN 86.318 1 89.933 89.433 90.433 3.6153 0 0 0 0.53105 1 21561 21561 0.40072 0 1 + 25140 27128 15609 15618 29339 29339 0.1483362724820836 LQLQKPSAV 9 Unmodified _LQLQKPSAV_ 0 0 0 REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|123|3|anti-sense REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 492.310302734375 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.228 1 60.685 60.185 61.185 3.4572 0 0 0 0.37476 1 13128 13128 6.7232 0 1 + 25141 32503 15610 15619 29340 29340 0.08914333339942004 LQLQKPSAV 9 Unmodified _LQLQKPSAV_ 0 0 0 REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|123|3|anti-sense REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_2 3 492.310302734375 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.922 1 61.213 60.713 61.713 3.2912 0 0 0 0.37476 1 13370 13370 6.7232 0 1 + 25142 32503 15610 15619 29341 29341 0.08914333339942004 LQLQKPSAV 9 Unmodified _LQLQKPSAV_ 0 0 0 REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|123|3|anti-sense REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_3 4 492.31036376953125 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 58.078 1 61.246 60.746 61.746 3.1681 0 0 0 0.37476 1 13468 13468 6.7232 0 1 + 25143 32503 15610 15619 29342 29342 0.08914333339942004 LQLQKQYEI 9 Unmodified _LQLQKQYEI_ 0 0 0 REV__nc|ENSG00000088899|O60299-2|LZTS3 REV__nc|ENSG00000088899|O60299-2|LZTS3 MULTI-MSMS UPN47_class_I_Rep_1 2 581.8272705078125 2 581.826963 1161.63937 0.39683 0.00023088 -0.28602 -0.00016641 0.11081 6.4472E-05 581.8268477204408 61 0.31107 64.381 64.294 64.605 3.3815 35 24 2 0 0 0 0.43153 1 14340 14340 6.2058 1.3088 1 143710 + 25144 17997 15611 15620 29343 29343 0.06501970194563 LQLQKQYEI 9 Unmodified _LQLQKQYEI_ 0 0 0 REV__nc|ENSG00000088899|O60299-2|LZTS3 REV__nc|ENSG00000088899|O60299-2|LZTS3 MULTI-MSMS UPN47_class_I_Rep_2 3 581.8268432617188 2 581.826963 1161.63937 0.47734 0.00027773 -0.33573 -0.00019534 0.1416 8.2388E-05 581.826700063923 60.849 0.6538 64.115 63.742 64.396 3.2654 145 66 3 0 0 0 0.01718 2 14242 14167;14242 65.235 4.1451 1 672510 + 25145 17997 15611 15620 29344;29345 29345 0.06501970194563 LQLQKQYEI 9 Unmodified _LQLQKQYEI_ 0 0 0 REV__nc|ENSG00000088899|O60299-2|LZTS3 REV__nc|ENSG00000088899|O60299-2|LZTS3 MULTI-MSMS UPN47_class_I_Rep_3 4 582.3291625976562 2 581.826963 1161.63937 0.38782 0.00022565 -0.34811 -0.00020254 0.039717 2.3109E-05 581.826857148033 61.322 0.51145 64.488 64.327 64.839 3.1651 71 39 2 0 0 0 0.32682 3 14429 14429;14527;14532 12.241 2.0901 1 218200 + 25146 17997 15611 15620 29346;29347;29348 29346 0.06501970194563 LQLQKQYEI 9 Unmodified _LQLQKQYEI_ 0 0 0 REV__nc|ENSG00000088899|O60299-2|LZTS3 REV__nc|ENSG00000088899|O60299-2|LZTS3 MSMS UPN47_class_I_Rep_3 4 581.827392578125 2 581.826963 1161.63937 NaN NaN NaN NaN NaN NaN NaN 61.799 1 64.966 64.466 65.466 3.1667 0 0 0 0.37692 1 14605 14605 6.2058 0.9089 1 + 25147 17997 15611 15620 29349 29349 0.06501970194563 LQLQVRLL 8 Unmodified _LQLQVRLL_ 0 0 0 L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|45|2|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|45|2|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|45|2|sense MSMS UPN47_class_I_Rep_2 3 491.823974609375 2 491.824027 981.633501 NaN NaN NaN NaN NaN NaN NaN 65.839 1 69.098 68.598 69.598 3.2588 0 0 0 0.40625 1 15779 15779 2.3027 0 1 25148 8534 15612 15621 29350 29350 0.1419491647357063 LQLQYLQQL 9 Unmodified _LQLQYLQQL_ 0 0 0 REV__HERVK9-int_dup18|chr1:54630776-54633691:+|3.1073298934328264|0.3900889070619937|2.99|151.0|129|2|anti-sense REV__HERVK9-int_dup18|chr1:54630776-54633691:+|3.1073298934328264|0.3900889070619937|2.99|151.0|129|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 573.8300170898438 2 573.829506 1145.64446 0.45278 0.00025982 -0.07945 -4.559E-05 0.37333 0.00021423 573.8293911816048 74.254 0.29225 74.254 74.199 74.491 0 58 33 2 0 0 0 0.20276 1 17260 17260 20.454 0.039092 1 809970 + 25149 23821 15613 15622 29351 29351 0.07746274057171831 LQLSTVHLFG 10 Unmodified _LQLSTVHLFG_ 0 0 0 REV__L1MEf_dup9516|chr14:104996821-104997726:+|1.0109480294203084|0.1249773438055772|3.02|151.0|51|3|anti-sense REV__L1MEf_dup9516|chr14:104996821-104997726:+|1.0109480294203084|0.1249773438055772|3.02|151.0|51|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.81689453125 2 557.816399 1113.61824 0.4698 0.00026206 -0.96948 -0.00054079 -0.49969 -0.00027873 557.816241165174 45.568 0.37526 49.084 48.94 49.316 3.5162 31 25 2 0 0 0 0.56309 1 8857 8857 1.6526 0 1 127280 + 25150 28701 15614 15623 29352 29352 0.06598004885677256 LQNCIFYI 8 Unmodified _LQNCIFYI_ 0 0 0 MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|19|3|sense MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|19|3|sense MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|19|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 507.7950744628906 2 507.259871 1012.50519 0.23964 0.00012156 -0.47426 -0.00024057 -0.23461 -0.00011901 507.25972418641084 77.649 0.16437 81.078 80.96 81.124 3.4289 17 13 2 0 0 0 0.72333 1 19254 19254 12.532 3.1841 1 30120 25151 15871 15615 15624 29353 29353 -0.0005638683184088222 LQNGRKYLL 9 Unmodified _LQNGRKYLL_ 0 0 0 L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|14|1|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|14|1|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 552.8295288085938 2 552.82984 1103.64513 NaN NaN NaN NaN NaN NaN NaN 69.865 1 73.325 72.825 73.825 3.4598 0 0 0 0.39428 1 16238 16238 2.0598 1.2661 1 25152 9871 15616 15625 29354 29354 0.09745113496887825 LQNYKKTTL 9 Unmodified _LQNYKKTTL_ 0 0 0 L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|116|2|sense L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|116|2|sense L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|116|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.8221435546875 2 554.821681 1107.62881 0.53342 0.00029595 0.23804 0.00013207 0.77145 0.00042802 554.8218094273309 54.813 0.61082 58.321 57.947 58.558 3.5082 83 43 2 0 0 0 0.31407 1 11694 11694 13.042 0 1 282900 25153 14933 15617 15626 29355 29355 0.07929987540137517 LQPALLIL 8 Unmodified _LQPALLIL_ 0 0 0 REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 441.297607421875 2 440.796946 879.57934 0.13467 5.9363E-05 3.1673 0.0013961 3.3019 0.0014555 440.7993091641826 76.847 0.33772 76.847 76.554 76.891 0 48 36 2 0 0 0 0.82752 1 17939 17939 0.69038 0 1 104120 + 25154 23175 15618 15627 29356 29356 0.1347332432201256 LQPIIINRQ 9 Unmodified _LQPIIINRQ_ 0 0 0 REV__MER113_dup3534|chr20:48641155-48641482:+|1.5401912601292471|0.1485556632531371|3.37|151.0|15|1|anti-sense REV__MER113_dup3534|chr20:48641155-48641482:+|1.5401912601292471|0.1485556632531371|3.37|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_1 5 547.8380126953125 2 547.837665 1093.66078 NaN NaN NaN NaN NaN NaN NaN 48.878 1 52.402 51.902 52.902 3.5239 0 0 0 0.39518 1 9818 9818 1.8442 0 1 + 25155 31077 15619 15628 29357 29357 0.11769400013940867 LQPKVKRLKVL 11 Unmodified _LQPKVKRLKVL_ 0 0 0 REV__ENSG00000171103|ENST00000306108|TRMT61B REV__ENSG00000171103|ENST00000306108|TRMT61B MSMS UPN47_class_I_Rep_3 4 441.2976379394531 3 441.306252 1320.89693 NaN NaN NaN NaN NaN NaN NaN 85.725 1 89.097 88.597 89.597 3.3716 0 0 0 0.38417 1 21478 21478 0.08335 0.08335 1 + 25156 20396 15620 15629 29358 29358 0.24931331858397243 LQPLRWRVW 9 Unmodified _LQPLRWRVW_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|69|1|anti-sense;LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|68|1|anti-sense;LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|67|1|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|69|1|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|69|1|anti-sense MSMS UPN48_class_I_Rep_3 7 627.3675537109375 2 627.366924 1252.7193 NaN NaN NaN NaN NaN NaN NaN 59.563 1 63.079 62.579 63.579 3.5169 0 0 0 0.4007 1 13010 13010 0.52476 0 1 25157 15545 15621 15630 29359 29359 0.10304501379073372 LQPNDNIK 8 Unmodified _LQPNDNIK_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|99|2|sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|99|2|sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|99|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.25592041015625 2 471.256174 940.497795 0.25605 0.00012066 -0.82121 -0.000387 -0.56516 -0.00026634 471.2557073694981 24.73 0.73574 28.366 28.076 28.812 3.6363 119 85 2 0 0 0 0.82752 1 2878 2878 4.756 0 1 82449 25158 11265 15622 15631 29360 29360 0.025165968920873638 LQPNDNIK 8 Unmodified _LQPNDNIK_ 0 0 0 L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|99|2|sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|99|2|sense L1MC2_dup4754|chr13:44526763-44530984:+|1.532880055322448|0.027170846533982|5.82|150.0|99|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.25543212890625 2 471.256174 940.497795 0.094492 4.453E-05 -0.63287 -0.00029824 -0.53837 -0.00025371 471.25572950617425 24.732 0.60722 28.501 28.148 28.755 3.769 100 72 2 0 0 0 0.82752 1 2924 2924 7.2892 0 1 71205 25159 11265 15622 15631 29361 29361 0.025165968920873638 LQPPFFSA 8 Unmodified _LQPPFFSA_ 0 0 0 ENST00000495577.1_1_3:154884707-154886622:+|nuORF;ENSG00000196549|ENST00000360490|MME ENST00000495577.1_1_3:154884707-154886622:+|nuORF ENST00000495577.1_1_3:154884707-154886622:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 453.7395935058594 2 453.739628 905.464704 0.16077 7.2946E-05 0.0069233 3.1414E-06 0.16769 7.6087E-05 453.739566573806 104.51 0.23211 108.21 108.16 108.39 3.6991 61 32 2 0 0 0 0.82752 1 24776 24776 5.7604 0.52976 1 7913600 25160 5316 15623 15632 29362 29362 0.008190148400444741 LQPRLLIE 8 Unmodified _LQPRLLIE_ 0 0 0 L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|12|1|sense L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|12|1|sense L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 491.3088684082031 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 108.12 1 108.12 107.62 108.62 0 0 0 0 0.39819 1 26418 26418 8.5933 0 1 25161 15381 15624 15633 29363 29363 0.11078923719605882 LQPSSLAQI 9 Unmodified _LQPSSLAQI_ 0 0 0 LTR56_dup754|chr13:28172904-28173291:-|1.2304174624253577|0.0035203386984812|8.45|151.0|20|3|sense LTR56_dup754|chr13:28172904-28173291:-|1.2304174624253577|0.0035203386984812|8.45|151.0|20|3|sense LTR56_dup754|chr13:28172904-28173291:-|1.2304174624253577|0.0035203386984812|8.45|151.0|20|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.7740173339844 2 478.7742 955.533846 0.080058 3.833E-05 -0.37547 -0.00017976 -0.29541 -0.00014143 478.77398044945846 67.286 0.40579 70.647 70.363 70.769 3.3611 36 32 2 0 0 0 0.26468 1 16158 16158 16.149 0.90062 1 71265 25162 15679 15625 15634 29364 29364 0.054300540689382615 LQPTLKFT 8 Unmodified _LQPTLKFT_ 0 0 0 nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 MULTI-MSMS UPN46_class_I_Rep_3 1 474.28216552734375 2 474.28166 946.548768 0.025354 1.2025E-05 1.4802 0.00070201 1.5055 0.00071404 474.2821348595828 31.596 0.12193 31.596 31.51 31.632 0 16 7 3 0 0 0 0.82752 1 5306 5306 4.3292 0.38484 1 822990 25163 4423 15626 15635 29365 29365 0.07335545936939525 LQPVLLIWKY 10 Unmodified _LQPVLLIWKY_ 0 0 0 ENST00000449105.7_2_2:38800358-38800400:-|nuORF ENST00000449105.7_2_2:38800358-38800400:-|nuORF ENST00000449105.7_2_2:38800358-38800400:-|nuORF MSMS UPN46_class_I_Rep_3 1 636.8878784179688 2 636.889367 1271.76418 NaN NaN NaN NaN NaN NaN NaN 37.736 1 37.736 37.236 38.236 0 0 0 0 0.53105 1 7126 7126 0.40072 0 1 25164 6804 15627 15636 29366 29366 0.1391688740175141 LQQAWIVY 8 Unmodified _LQQAWIVY_ 0 0 0 ENST00000370951.5_1_1:70716702-70716798:+|nuORF ENST00000370951.5_1_1:70716702-70716798:+|nuORF ENST00000370951.5_1_1:70716702-70716798:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 510.77947998046875 2 510.779285 1019.54402 0.35992 0.00018384 -1.1821 -0.00060382 -0.82223 -0.00041998 510.778566649442 25.8 0.6095 29.433 29.164 29.774 3.6333 83 66 2 0 0 0 0.82752 1 3126 3126 0.79363 0 1 92685 25165 6386 15628 15637 29367 29367 0.035026617941639415 LQQITTNF 8 Unmodified _LQQITTNF_ 0 0 0 MLT1D_dup11627|chrX:72407557-72407831:+|1.0965898905537494|0.0079160512700441|7.11|150.0|11|1|anti-sense MLT1D_dup11627|chrX:72407557-72407831:+|1.0965898905537494|0.0079160512700441|7.11|150.0|11|1|anti-sense MLT1D_dup11627|chrX:72407557-72407831:+|1.0965898905537494|0.0079160512700441|7.11|150.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.75823974609375 2 482.758549 963.502546 -0.29055 -0.00014027 -0.078997 -3.8137E-05 -0.36955 -0.0001784 482.7584980572398 36.697 0.62811 40.367 40.089 40.717 3.6692 82 52 2 0 0 0 0.82752 1 6856 6856 5.7604 0 1 99298 25166 16325 15629 15638 29368 29368 0.01933481034848228 LQQITTNF 8 Unmodified _LQQITTNF_ 0 0 0 MLT1D_dup11627|chrX:72407557-72407831:+|1.0965898905537494|0.0079160512700441|7.11|150.0|11|1|anti-sense MLT1D_dup11627|chrX:72407557-72407831:+|1.0965898905537494|0.0079160512700441|7.11|150.0|11|1|anti-sense MLT1D_dup11627|chrX:72407557-72407831:+|1.0965898905537494|0.0079160512700441|7.11|150.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.75848388671875 2 482.758549 963.502546 -0.40936 -0.00019762 -0.038764 -1.8714E-05 -0.44813 -0.00021634 482.7584879247399 37.108 0.60847 40.355 40.083 40.691 3.247 80 46 2 0 0 0 0.82752 1 7015 7015 5.7604 0 1 128520 25167 16325 15629 15638 29369 29369 0.01933481034848228 LQQNTIREN 9 Unmodified _LQQNTIREN_ 0 0 0 L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|11|2|sense L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|11|2|sense L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 558.2943115234375 2 558.293819 1114.57309 NaN NaN NaN NaN NaN NaN NaN 24.038 1 27.389 26.889 27.889 3.3509 0 0 0 0.3967 1 3159 3159 1.4819 0 1 25168 10243 15630 15639 29370 29370 0.020381543525445522 LQQPFCYPL 9 Unmodified _LQQPFCYPL_ 0 0 0 REV__L1MB2_dup4434|chr9:88464745-88465686:-|1.3290793412676245|0.1668861560005111|2.99|151.0|42|1|anti-sense REV__L1MB2_dup4434|chr9:88464745-88465686:-|1.3290793412676245|0.1668861560005111|2.99|151.0|42|1|anti-sense MSMS UPN46_class_I_Rep_3 1 554.7962646484375 2 554.778428 1107.5423 NaN NaN NaN NaN NaN NaN NaN 25.641 1 25.641 25.141 26.141 0 0 0 0 0.38478 1 3548 3548 4.3292 0 1 + 25169 25734 15631 15640 29371 29371 -0.007167152861029535 LQQQSVVF 8 Unmodified _LQQQSVVF_ 0 0 0 nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A nc|ENSG00000082269|Q9P2D6-3|FAM135A nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-MSMS UPN47_class_I_Rep_2 3 474.76080322265625 2 474.761092 947.507631 -0.24277 -0.00011526 -0.8371 -0.00039742 -1.0799 -0.00051268 474.76101005530467 42.337 0.71437 45.698 45.409 46.124 3.3611 118 53 3 0 0 0 0.82752 1 8607 8607 14.838 1.7958 1 144330 25170 1223 15632 15641 29372 29372 0.03177784897479796 LQQYRNPWN 9 Unmodified _LQQYRNPWN_ 0 0 0 REV__Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|3|1|sense REV__Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 406.87176513671875 3 406.871995 1217.59415 -0.098435 -4.0051E-05 0.11308 4.6009E-05 0.014644 5.9583E-06 406.8720027090135 34.286 1.173 34.286 33.963 35.136 0 219 85 4 0 0 0 0.48433 1 6055 6055 2.2828 0.69049 1 619530 + 25171 23995 15633 15642 29373 29373 -0.0059383554796568205 LQRALAQL 8 Unmodified _LQRALAQL_ 0 0 0 nc|ENSG00000058453|Q5TZA2-2|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;ENSG00000058453|ENST00000375541|CROCC nc|ENSG00000058453|Q5TZA2-2|CROCC nc|ENSG00000058453|Q5TZA2-2|CROCC MULTI-MSMS UPN47_class_I_Rep_1 2 456.78424072265625 2 456.784902 911.55525 -0.42166 -0.00019261 -0.43837 -0.00020024 -0.86003 -0.00039285 456.78450172383396 16.375 0.55696 19.897 19.656 20.213 3.5224 108 63 2 0 0 0 0.82752 1 1009 1009 7.9102 0 1 59233 25172 16626 15634 15643 29374 29374 0.09593483888306764 LQRDLDSLT 9 Unmodified _LQRDLDSLT_ 0 0 0 L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|24|1|sense;L1PA6_dup49|chr1:41552782-41555631:-|1.9740737274710305|0.2086153392182552|3.24|151.0|57|2|sense;L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|73|2|sense L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|24|1|sense L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|24|1|sense MSMS UPN47_class_I_Rep_3 4 530.7861938476562 2 530.785296 1059.55604 NaN NaN NaN NaN NaN NaN NaN 71.182 1 74.401 73.901 74.901 3.2188 0 0 0 0.39036 1 17452 17452 2.9952 0.10602 1 25173 14452 15635 15644 29375 29375 0.02864233746709033 LQRHIVFHG 9 Unmodified _LQRHIVFHG_ 0 0 0 REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|47|2|sense REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|47|2|sense MSMS UPN47_class_I_Rep_2 3 553.8134765625 2 553.814525 1105.6145 NaN NaN NaN NaN NaN NaN NaN 41.674 1 45.039 44.539 45.539 3.3655 0 0 0 0.39428 1 8421 8421 2.0598 0 1 + 25174 31494 15636 15645 29376 29376 0.0659137990248837 LQRIIQRKKKI 11 Unmodified _LQRIIQRKKKI_ 0 0 0 L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|10|2|sense L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|10|2|sense L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 475.3249816894531 3 475.324305 1422.95109 NaN NaN NaN NaN NaN NaN NaN 61.277 1 64.745 64.245 65.245 3.4678 0 0 0 0.38417 1 13621 13621 0.094841 0.094841 1 25175 11984 15637 15646 29377 29377 0.25652924009955314 LQRIIQRKKKI 11 Unmodified _LQRIIQRKKKI_ 0 0 0 L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|10|2|sense L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|10|2|sense L1MD2_dup1671|chr3:32494450-32495066:+|2.3150930489080923|0.0664931215934219|5.12|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 475.32525634765625 3 475.324305 1422.95109 NaN NaN NaN NaN NaN NaN NaN 61.357 1 64.835 64.335 65.335 3.4773 0 0 0 0.38417 1 13624 13624 0.094841 0.094841 1 25176 11984 15637 15646 29378 29378 0.25652924009955314 LQRKAHQT 8 Unmodified _LQRKAHQT_ 0 0 0 L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|87|3|sense L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|87|3|sense L1PA10_dup1620|chr4:48400701-48404237:-|2.405852707421114|0.0859224536847133|4.81|151.0|87|3|sense MSMS UPN47_class_I_Rep_1 2 491.2989807128906 2 491.283057 980.551562 NaN NaN NaN NaN NaN NaN NaN 106.93 1 110.6 110.1 111.1 3.6724 0 0 0 0.40643 1 26203 26203 2.0598 0 1 25177 13593 15638 15647 29379 29379 0.06050814114462355 LQRLAIAQ 8 Unmodified _LQRLAIAQ_ 0 0 0 nc|ENSG00000110042|Q9Y2E6-2|DTX4;ENSG00000110042|ENST00000227451|DTX4 nc|ENSG00000110042|Q9Y2E6-2|DTX4 nc|ENSG00000110042|Q9Y2E6-2|DTX4 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7841796875 2 456.784902 911.55525 -0.99642 -0.00045515 -0.13816 -6.3107E-05 -1.1346 -0.00051826 456.7847467970705 16.826 0.89334 20.188 19.911 20.804 3.3619 122 101 2 0 0 0 0.82752 1 1127 1127 2.3027 0 1 38020 25178 1920 15639 15648 29380 29380 0.09593483888295395 LQRLENTQY 9 Unmodified _LQRLENTQY_ 0 0 0 ENSG00000198858|ENST00000361574|R3HDM4;ENST00000590454.2_1_19:900936-902165:-|nuORF ENSG00000198858|ENST00000361574|R3HDM4 ENSG00000198858|ENST00000361574|R3HDM4 MSMS UPN46_class_I_Rep_3 1 582.8040771484375 2 582.80402 1163.59349 NaN NaN NaN NaN NaN NaN NaN 37.115 1 37.115 36.615 37.615 0 0 0 0 0.18341 1 6947 6947 17.443 8.0595 1 25179 5476 15640 15649 29381 29381 0.018233250123103062 LQRLKLKS 8 Unmodified _LQRLKLKS_ 0 0 0 L1MEi_dup5106|chr21:44036809-44037126:+|1.140538455333128|0.0909714366046385|3.65|151.0|14|1|anti-sense L1MEi_dup5106|chr21:44036809-44037126:+|1.140538455333128|0.0909714366046385|3.65|151.0|14|1|anti-sense L1MEi_dup5106|chr21:44036809-44037126:+|1.140538455333128|0.0909714366046385|3.65|151.0|14|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.32952880859375 2 493.329476 984.6444 -0.11878 -5.8598E-05 -0.15638 -7.7148E-05 -0.27516 -0.00013575 493.3293635152112 21.525 1.1546 24.949 24.519 25.673 3.4241 188 126 2 0 0 0 0.82752 1 2346 2346 0.6015 0 1 99396 25180 13462 15641 15650 29382 29382 0.15146318847826024 LQRLRVDPSVL 11 Unmodified _LQRLRVDPSVL_ 0 0 0 ENST00000297107.10_1_5:153798313-153798457:+|nuORF ENST00000297107.10_1_5:153798313-153798457:+|nuORF ENST00000297107.10_1_5:153798313-153798457:+|nuORF MSMS UPN46_class_I_Rep_3 1 432.59759521484375 3 432.597983 1294.77212 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.79 103.29 104.29 0 0 0 0 0.38417 1 25325 25325 0.40827 0.24894 1 25181 6062 15642 15651 29383 29383 0.13652414651210165 LQRLWRLVLHV 11 Unmodified _LQRLWRLVLHV_ 0 0 0 ENST00000558966.5_1_15:44719997-44751301:+|nuORF ENST00000558966.5_1_15:44719997-44751301:+|nuORF ENST00000558966.5_1_15:44719997-44751301:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.3026428222656 3 478.301501 1431.88267 0.26381 0.00012618 1.4759 0.00070592 1.7397 0.0008321 478.30183541717224 66.593 0.28988 70.101 69.962 70.251 3.5077 25 19 2 0 0 0 0.68081 1 15156 15156 0.45452 0.046251 1 140480 25182 7445 15643 15652 29384 29384 0.18400679430078526 LQRNYKVY 8 Unmodified _LQRNYKVY_ 0 0 0 L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|26|3|sense L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|26|3|sense L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|26|3|sense MSMS UPN47_class_I_Rep_1 2 542.2354736328125 2 542.300916 1082.58728 NaN NaN NaN NaN NaN NaN NaN 66.901 1 70.263 69.763 70.763 3.3611 0 0 0 0.40625 1 16056 16056 2.3027 0.4585 1 25183 10670 15644 15653 29385 29385 0.04928851571457926 LQRRGRPV 8 Unmodified _LQRRGRPV_ 0 0 0 REV__ENST00000330333.10_1_21:42539880-42598206:+|nuORF REV__ENST00000330333.10_1_21:42539880-42598206:+|nuORF MSMS UPN47_class_I_Rep_1 2 491.2957458496094 2 491.306867 980.599181 NaN NaN NaN NaN NaN NaN NaN 107.63 1 111.3 110.8 111.8 3.6724 0 0 0 0.39819 1 26371 26371 8.5933 1.304 1 + 25184 21774 15645 15654 29386 29386 0.10810513105320751 LQRVRPRAQ 9 Unmodified _LQRVRPRAQ_ 0 0 0 L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|93|2|anti-sense L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|93|2|anti-sense L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|93|2|anti-sense MSMS UPN46_class_I_Rep_3 1 562.343994140625 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 60.287 1 60.287 59.787 60.787 0 0 0 0 0.39518 1 13367 13367 1.8442 0 1 25185 12678 15646 15655 29387 29387 0.11697856196815337 LQSILEHYY 9 Unmodified _LQSILEHYY_ 0 0 0 L1MB8_dup2797|chr3:49397162-49397491:+|2.286817297436859|0.0027734338279979|9.69|151.0|22|3|anti-sense L1MB8_dup2797|chr3:49397162-49397491:+|2.286817297436859|0.0027734338279979|9.69|151.0|22|3|anti-sense L1MB8_dup2797|chr3:49397162-49397491:+|2.286817297436859|0.0027734338279979|9.69|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_2 3 583.298583984375 2 583.298039 1164.58152 NaN NaN NaN NaN NaN NaN NaN 53.752 1 57.078 56.578 57.578 3.3266 0 0 0 0.37692 1 12097 12097 6.2058 0.97511 1 25186 10989 15647 15656 29388 29388 0.005817082691237374 LQSKELGFV 9 Unmodified _LQSKELGFV_ 0 0 0 REV__ENSG00000188493|ENST00000378313|ACTMAP REV__ENSG00000188493|ENST00000378313|ACTMAP MULTI-MSMS UPN47_class_I_Rep_1 2 510.7907409667969 2 510.78985 1019.56515 0.21737 0.00011103 0.027235 1.3911E-05 0.2446 0.00012494 510.7897546533304 56.352 0.59808 59.809 59.503 60.101 3.4572 76 31 3 0 0 0 0.42249 2 12803 12803;12927 6.7232 0 1 276820 + 25187 20970 15648 15657 29389;29390 29389 0.05614627103057046 LQSKELGFV 9 Unmodified _LQSKELGFV_ 0 0 0 REV__ENSG00000188493|ENST00000378313|ACTMAP REV__ENSG00000188493|ENST00000378313|ACTMAP MULTI-MSMS UPN47_class_I_Rep_3 4 510.78912353515625 2 510.78985 1019.56515 0.20826 0.00010638 -0.24611 -0.00012571 -0.03785 -1.9334E-05 510.78960832949923 56.765 0.52202 59.937 59.634 60.156 3.1721 58 37 2 0 0 0 0.42249 3 13007 13007;13049;13089 6.7232 0 1 275430 + 25188 20970 15648 15657 29391;29392;29393 29391 0.05614627103057046 LQSYIHKIL 9 Unmodified _LQSYIHKIL_ 0 0 0 ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|1|intron;ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|2|intron;ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|3|intron ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|1|intron ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 557.8343505859375 2 557.834591 1113.65463 0.45956 0.00025636 -0.26069 -0.00014542 0.19888 0.00011094 557.8345080611542 48.566 0.74559 52.09 51.738 52.484 3.5239 85 50 2 0 0 0 0.47763 1 9632 9632 2.9952 0 1 250010 25189 4220 15649 15658 29394 29394 0.1023488178241223 LQSYIHKIL 9 Unmodified _LQSYIHKIL_ 0 0 0 ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|1|intron;ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|2|intron;ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|3|intron ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|1|intron ENSG00000166164.16,BRD7,chr16,-,I6.1,50349624,50350016|23|5.59|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 558.334716796875 2 557.834591 1113.65463 0.40123 0.00022382 -0.35307 -0.00019695 0.048164 2.6868E-05 557.8343580754397 48.324 0.80082 52.06 51.65 52.451 3.7361 116 58 3 0 0 0 0.43153 1 9726 9726 6.2058 0 1 246390 25190 4220 15649 15658 29395 29395 0.1023488178241223 LQTHPQIL 8 Unmodified _LQTHPQIL_ 0 0 0 L1MB8_dup14745|chr17:81006829-81007641:-|1.757851392142674|0.4197205828839377|2.07|151.0|17|2|sense L1MB8_dup14745|chr17:81006829-81007641:-|1.757851392142674|0.4197205828839377|2.07|151.0|17|2|sense L1MB8_dup14745|chr17:81006829-81007641:-|1.757851392142674|0.4197205828839377|2.07|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 475.2768249511719 2 475.276909 948.539266 0.10661 5.0668E-05 0.16041 7.6241E-05 0.26702 0.00012691 475.2767121786721 43.839 0.45821 47.349 47.274 47.733 3.5103 56 35 2 0 0 0 0.82752 1 8285 8285 14.838 0.93222 1 114940 25191 10952 15650 15659 29396 29396 0.06293777651421806 LQTHPQIL 8 Unmodified _LQTHPQIL_ 0 0 0 L1MB8_dup14745|chr17:81006829-81007641:-|1.757851392142674|0.4197205828839377|2.07|151.0|17|2|sense L1MB8_dup14745|chr17:81006829-81007641:-|1.757851392142674|0.4197205828839377|2.07|151.0|17|2|sense L1MB8_dup14745|chr17:81006829-81007641:-|1.757851392142674|0.4197205828839377|2.07|151.0|17|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 475.276909 948.539266 0.13025 6.1906E-05 0.35219 0.00016739 0.48245 0.0002293 475.27688740257344 43.83 0.47195 47.468 47.199 47.671 3.6385 0.059792 0.00011093 NaN 14.838 42 30 2 NaN NaN NaN NaN 0 NaN NaN 0 113180 25192 10952 15650 15659 0.06293777651421806 LQTPELDKS 9 Unmodified _LQTPELDKS_ 0 0 0 REV__L1PA4_dup2390|chr3:142323885-142324911:-|3.0106354062885163|0.1072176232177538|4.81|151.0|20|2|sense REV__L1PA4_dup2390|chr3:142323885-142324911:-|3.0106354062885163|0.1072176232177538|4.81|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 515.7637939453125 2 515.774396 1029.53424 NaN NaN NaN NaN NaN NaN NaN 35.364 1 39.037 38.537 39.537 3.6735 0 0 0 0.37476 1 5818 5818 6.7232 0 1 + 25193 29512 15651 15660 29397 29397 0.02065428998139396 LQTQRDQRRLK 11 Unmodified _LQTQRDQRRLK_ 0 0 0 ENST00000380637.7_1_21:40834409-40883616:+|nuORF ENST00000380637.7_1_21:40834409-40883616:+|nuORF ENST00000380637.7_1_21:40834409-40883616:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 481.2839050292969 3 481.283057 1440.82734 0.26986 0.00012988 0.62969 0.00030306 0.89955 0.00043294 481.28324973307855 95.967 0.057182 95.967 95.938 95.995 0 10 6 2 0 0 0 0.68024 1 23319 23319 0.50596 0 1 123690 25194 6489 15652 15661 29398 29398 0.12456221171669313 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.2828063964844 3 472.283169 1413.82768 0.24577 0.00011607 0.03765 1.7781E-05 0.28342 0.00013386 472.28297039414906 97.513 0.20027 97.513 97.367 97.567 0 42 21 3 0 0 0 0.67356 1 23700 23700 1.1098 0.6038 1 193050 + 25195 30221 15653 15662 29399 29399 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.2832946777344 3 472.283169 1413.82768 0.26729 0.00012624 0.24665 0.00011649 0.51394 0.00024272 472.2830959108583 93.228 0.16769 96.696 96.595 96.763 3.4687 31 23 2 0 0 0 0.67356 1 23014 23014 1.1098 0.6038 1 120250 + 25196 30221 15653 15662 29400 29400 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.6175537109375 3 472.283169 1413.82768 0.26867 0.00012689 0.08917 4.2113E-05 0.35783 0.000169 472.2830093883653 93.34 0.14783 96.809 96.723 96.871 3.4687 29 21 2 0 0 0 0.67356 1 23045 23045 1.1098 0.6038 1 95512 + 25197 30221 15653 15662 29401 29401 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.28338623046875 3 472.283169 1413.82768 0.086058 4.0644E-05 0.48396 0.00022857 0.57002 0.00026921 472.2832769948158 93.096 0.54772 96.72 96.408 96.956 3.624 104 71 2 0 0 0 0.67356 2 22320 22320;22355 1.1098 0.6038 1 260520 + 25198 30221 15653 15662 29402;29403 29402 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.2828369140625 3 472.283169 1413.82768 0.21257 0.00010039 0.40418 0.00019089 0.61675 0.00029128 472.2831345229501 92.856 0.47662 96.626 96.333 96.81 3.77 113 67 3 0 0 0 0.67356 2 22093 22093;22120 1.1098 0.6038 1 273650 + 25199 30221 15653 15662 29404;29405 29404 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.61798095703125 3 472.283169 1413.82768 0.21241 0.00010032 0.45172 0.00021334 0.66413 0.00031366 472.2831342906029 93.237 0.15103 97.007 96.948 97.099 3.77 32 21 2 0 0 0 0.67356 1 22181 22181 1.1098 0.6038 1 130230 + 25200 30221 15653 15662 29406 29406 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.2825012207031 3 472.283169 1413.82768 0.21378 0.00010096 0.27339 0.00012912 0.48717 0.00023008 472.28310715887727 92.797 0.23833 96.676 96.482 96.72 3.8782 44 33 2 0 0 0 0.66279 1 21962 21962 2.084 1.578 1 174330 + 25201 30221 15653 15662 29407 29407 0.13731640891546704 LQTRSIRTRQR 11 Unmodified _LQTRSIRTRQR_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.2833557128906 3 472.283169 1413.82768 0.21286 0.00010053 0.24253 0.00011454 0.45539 0.00021507 472.6177707140314 93.174 0.12922 97.065 97.016 97.145 3.8914 25 17 2 0 0 0 0.67356 1 22076 22076 1.1098 0.6038 1 156650 + 25202 30221 15653 15662 29408 29408 0.13731640891546704 LQVDILGWI 9 Unmodified _LQVDILGWI_ 0 0 0 L1MC5_dup11366|chr13:49758247-49759341:+|1.214473041425718|0.0107152864902484|6.82|150.0|51|2|anti-sense L1MC5_dup11366|chr13:49758247-49759341:+|1.214473041425718|0.0107152864902484|6.82|150.0|51|2|anti-sense L1MC5_dup11366|chr13:49758247-49759341:+|1.214473041425718|0.0107152864902484|6.82|150.0|51|2|anti-sense MSMS UPN47_class_I_Rep_3 4 528.818603515625 2 528.808042 1055.60153 NaN NaN NaN NaN NaN NaN NaN 64.391 1 67.565 67.065 68.065 3.1741 0 0 0 0.2088 1 15397 15397 15.847 0 1 25203 11656 15654 15663 29409 29409 0.075955039997325 LQVGSRGNF 9 Unmodified _LQVGSRGNF_ 0 0 0 REV__ENST00000370691.6_1_20:60889559-60889904:-|nuORF REV__ENST00000370691.6_1_20:60889559-60889904:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 489.2617492675781 2 489.261791 976.509028 0.24025 0.00011755 0.071528 3.4996E-05 0.31178 0.00015254 489.2617382190292 39.468 0.55947 39.468 39.226 39.785 0 76 53 2 0 0 0 0.21527 1 7572 7572 19.257 0 1 252250 + 25204 18948 15655 15664 29410 29410 0.01983418986230845 LQVHPLEQL 9 Unmodified _LQVHPLEQL_ 0 0 0 REV__MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|31|1|anti-sense REV__MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|31|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 538.8084716796875 2 538.808574 1075.60259 0.29436 0.0001586 -0.094052 -5.0676E-05 0.20031 0.00010793 538.8087204685522 64.564 0.12527 64.564 64.48 64.605 0 15 13 2 0 0 0 0.42249 1 14530 14530 6.7232 0 1 96893 + 25205 31211 15656 15665 29411 29411 0.06781718368642942 LQVKKKKKKKF 11 Unmodified _LQVKKKKKKKF_ 0 0 0 REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF MSMS UPN46_class_I_Rep_3 1 468.26141357421875 3 468.325535 1401.95478 NaN NaN NaN NaN NaN NaN NaN 55.016 1 55.016 54.516 55.516 0 0 0 0 0.38417 1 11943 11943 0.50596 0 1 + 25206 22824 15657 15666 29412 29412 0.26987593783792363 LQVRRDWS 8 Unmodified _LQVRRDWS_ 0 0 0 L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|76|2|sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|76|2|sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|76|2|sense MSMS UPN46_class_I_Rep_3 1 530.28857421875 2 530.28834 1058.56213 NaN NaN NaN NaN NaN NaN NaN 29.966 1 29.966 29.466 30.466 0 0 0 0 0.40625 1 4815 4815 2.3027 0 1 25207 15367 15658 15667 29413 29413 0.035187967688898425 LQVSSAPLSGT 11 Unmodified _LQVSSAPLSGT_ 0 0 0 REV__nc|ENSG00000088280|Q8TDY4-2|ASAP3 REV__nc|ENSG00000088280|Q8TDY4-2|ASAP3 MSMS UPN46_class_I_Rep_3 1 530.2892456054688 2 530.287671 1058.56079 NaN NaN NaN NaN NaN NaN NaN 29.891 1 29.891 29.391 30.391 0 0 0 0 0.38417 1 4793 4793 2.4985 0.19575 1 + 25208 17986 15659 15668 29414 29414 0.03385117889479261 LQVYRWVCEKR 11 Unmodified _LQVYRWVCEKR_ 0 0 0 nc|ENSG00000161944|P07307-3|ASGR2;nc|ENSG00000161944|P07307-2|ASGR2;ENSG00000161944|ENST00000691900|ASGR2;nc|ENSG00000161944|P07307|ASGR2 nc|ENSG00000161944|P07307-3|ASGR2 nc|ENSG00000161944|P07307-3|ASGR2 MSMS UPN46_class_I_Rep_3 1 493.4928894042969 3 493.934489 1478.78164 NaN NaN NaN NaN NaN NaN NaN 50.271 1 50.271 49.771 50.771 0 0 0 0 0.38417 1 10615 10615 2.2527 0.51045 1 25209 3910 15660 15669 29415 29415 0.06139859665063341 LQWKRHLN 8 Unmodified _LQWKRHLN_ 0 0 0 REV__HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|45|3|sense REV__HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|45|3|sense MSMS UPN48_class_I_Rep_2 6 547.8131103515625 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 20.386 1 24.034 23.534 24.534 3.648 0 0 0 0.40625 1 1742 1742 2.3027 0.24298 1 + 25210 23338 15661 15670 29416 29416 0.07143379902527158 LQYIHLQL 8 Unmodified _LQYIHLQL_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS UPN48_class_I_Rep_1 5 514.3007202148438 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.723 1 75.189 74.689 75.689 3.466 0 0 0 0.3903 1 16788 16788 11.64 0 1 + 25211 19987 15662 15671 29417 29417 0.073986372025729 LQYIHLQL 8 Unmodified _LQYIHLQL_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS UPN48_class_I_Rep_1 5 514.3001098632812 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.902 1 75.368 74.868 75.868 3.466 0 0 0 0.37681 1 16844 16844 15.847 0 1 + 25212 19987 15662 15671 29418 29418 0.073986372025729 LQYIHLQL 8 Unmodified _LQYIHLQL_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS UPN48_class_I_Rep_3 7 514.2511596679688 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.507 1 75.033 74.533 75.533 3.5266 0 0 0 0.3903 1 16611 16611 11.64 0 1 + 25213 19987 15662 15671 29419 29419 0.073986372025729 LQYIHLQL 8 Unmodified _LQYIHLQL_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS UPN48_class_I_Rep_3 7 514.300537109375 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.635 1 75.162 74.662 75.662 3.5266 0 0 0 0.3903 1 16650 16650 11.64 0 1 + 25214 19987 15662 15671 29420 29420 0.073986372025729 LQYIHLQL 8 Unmodified _LQYIHLQL_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS UPN48_class_I_Rep_3 7 514.300048828125 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 71.754 1 75.281 74.781 75.781 3.5266 0 0 0 0.3903 1 16685 16685 11.64 0 1 + 25215 19987 15662 15671 29421 29421 0.073986372025729 LQYLRFNV 8 Unmodified _LQYLRFNV_ 0 0 0 REV__nc|ENSG00000100029|O00541-2|PES1 REV__nc|ENSG00000100029|O00541-2|PES1 MSMS UPN48_class_I_Rep_1 5 526.796142578125 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.156 1 26.717 26.217 27.217 3.5605 0 0 0 0.40625 1 2370 2370 2.3027 0.4585 1 + 25216 18085 15663 15672 29422 29422 0.05773753059816045 LQYMYHMIK 9 Unmodified _LQYMYHMIK_ 0 0 0 REV__ENST00000521493.5_1_14:102717317-102749821:-|nuORF REV__ENST00000521493.5_1_14:102717317-102749821:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 613.8067626953125 2 613.806662 1225.59877 0.42347 0.00025993 -0.69159 -0.0004245 -0.26811 -0.00016457 613.8061137048556 63.161 0.86245 66.331 65.976 66.838 3.1698 124 61 4 0 0 0 0.46869 1 15109 15109 3.9444 0.3479 1 245410 + 25217 17908 15664 15673 29423 29423 -0.005004107210652364 LQYSLMVAY 9 Unmodified _LQYSLMVAY_ 0 0 0 L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|163|1|anti-sense L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|163|1|anti-sense L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|163|1|anti-sense MSMS UPN48_class_I_Rep_2 6 544.2777099609375 2 544.27826 1086.54197 NaN NaN NaN NaN NaN NaN NaN 85.469 1 89.175 88.675 89.675 3.7058 0 0 0 0.37476 1 20325 20325 6.7232 0.99131 1 25218 13650 15665 15674 29424 29424 0.002158649940838586 LRAARKKKQII 11 Unmodified _LRAARKKKQII_ 0 0 0 L1M1_dup8733|chr17:21148760-21149969:+|3.366577707752961|0.0632213969266277|5.73|151.0|3|1|sense L1M1_dup8733|chr17:21148760-21149969:+|3.366577707752961|0.0632213969266277|5.73|151.0|3|1|sense L1M1_dup8733|chr17:21148760-21149969:+|3.366577707752961|0.0632213969266277|5.73|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 442.31365966796875 3 442.301501 1323.88267 NaN NaN NaN NaN NaN NaN NaN 34.755 1 38.441 37.941 38.941 3.6859 0 0 0 0.38417 1 6294 6294 1.2148 0.51716 1 25219 8640 15666 15675 29425 29425 0.23368679430132033 LRALKTITVI 10 Unmodified _LRALKTITVI_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A MULTI-SECPEP UPN47_class_I_Rep_1 2 564.3792114257812 2 564.379166 1126.74378 0.50118 0.00028286 0.44994 0.00025394 0.95113 0.0005368 564.3792508462637 109.45 0.36131 113.05 112.97 113.34 3.6046 47 44 2 0 0 0 0.84575 1 27008 27008 0.40072 0 1 405190 25220 732 15667 15676 29426 29426 0.18547716741932163 LRALLRFTYK 10 Unmodified _LRALLRFTYK_ 0 0 0 REV__MLT1D_dup716|chr1:110887848-110888270:+|1.3142155121996075|0.0163523032171147|6.33|151.0|31|3|anti-sense REV__MLT1D_dup716|chr1:110887848-110888270:+|1.3142155121996075|0.0163523032171147|6.33|151.0|31|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 427.30255126953125 3 427.599435 1279.77648 -0.55069 -0.00023547 -1.3088 -0.00055966 -1.8595 -0.00079513 427.5988991256848 65.674 0.18857 68.929 68.858 69.046 3.2556 13 10 2 0 0 0 0.84575 1 15730 15730 0.69767 0 1 64124 + 25221 31685 15668 15677 29427 29427 0.14777923864789955 LRARALWKR 9 Unmodified _LRARALWKR_ 0 0 0 ENST00000486280.1_1_11:206013-207021:-|nuORF ENST00000486280.1_1_11:206013-207021:-|nuORF ENST00000486280.1_1_11:206013-207021:-|nuORF MSMS UPN48_class_I_Rep_1 5 585.8057861328125 2 585.372541 1168.73053 NaN NaN NaN NaN NaN NaN NaN 32.93 1 36.457 35.957 36.957 3.5266 0 0 0 0.4007 1 5071 5071 0.52476 0 1 25222 7038 15669 15678 29428 29428 0.1529132347320683 LRARPKAKA 9 Unmodified _LRARPKAKA_ 0 0 0 REV__Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|3|1|sense REV__Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 505.8314208984375 2 505.832717 1009.65088 NaN NaN NaN NaN NaN NaN NaN 40.514 1 44.255 43.755 44.755 3.7413 0 0 0 0.4007 1 7300 7300 0.52476 0.52476 1 + 25223 32522 15670 15679 29429 29429 0.14644256799215327 LRARRTTT 8 Unmodified _LRARRTTT_ 0 0 0 L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|366|3|anti-sense L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|366|3|anti-sense L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|366|3|anti-sense MSMS UPN48_class_I_Rep_2 6 487.7950744628906 2 487.796332 973.578111 NaN NaN NaN NaN NaN NaN NaN 82.302 1 85.971 85.471 86.471 3.669 0 0 0 0.40746 1 19548 19548 0.69038 0.69038 1 25224 14486 15671 15680 29430 29430 0.09026503005793529 LRARTLTY 8 Unmodified _LRARTLTY_ 0 0 0 ENSG00000183813|ENST00000330953|CCR4 ENSG00000183813|ENST00000330953|CCR4 ENSG00000183813|ENST00000330953|CCR4 MSMS UPN47_class_I_Rep_2 3 497.76434326171875 2 497.295633 992.576714 NaN NaN NaN NaN NaN NaN NaN 58.45 1 61.732 61.232 62.232 3.2818 0 0 0 0.40604 1 13532 13532 2.5775 0 1 25225 5022 15672 15681 29431 29431 0.08012868917035121 LRCIKVKLY 9 Unmodified _LRCIKVKLY_ 0 0 0 REV__Charlie8_dup2661|chr17:67364670-67364885:+|1.0547234984002538|0.0201689107480453|5.71|151.0|6|2|sense REV__Charlie8_dup2661|chr17:67364670-67364885:+|1.0547234984002538|0.0201689107480453|5.71|151.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 568.355224609375 2 568.354637 1134.69472 NaN NaN NaN NaN NaN NaN NaN 32.273 1 35.965 35.465 36.465 3.6921 0 0 0 0.4007 1 4882 4882 0.52476 0 1 + 25226 17402 15673 15682 29432 29432 0.13276105181330422 LRCIKWVK 8 Unmodified _LRCIKWVK_ 0 0 0 REV__MSTA-int_dup2680|chr15:52445476-52447103:+|1.2943803209871627|0.0174028133425282|6.22|151.0|35|3|sense REV__MSTA-int_dup2680|chr15:52445476-52447103:+|1.2943803209871627|0.0174028133425282|6.22|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.3035278320312 2 523.320597 1044.62664 0.45801 0.00023969 1.407 0.00073629 1.865 0.00097598 523.32100458492 79.53 0.59174 83.172 82.804 83.395 3.6423 98 73 2 0 0 0 0.82752 1 18792 18792 2.3027 0 1 122460 + 25227 31874 15674 15683 29433 29433 0.10611280321313643 LRCRATNKK 9 Unmodified _LRCRATNKK_ 0 0 0 REV__L1M6_dup380|chr1:246550299-246550557:+|1.0093285708857394|0.1286490999137057|2.97|151.0|5|2|sense REV__L1M6_dup380|chr1:246550299-246550557:+|1.0093285708857394|0.1286490999137057|2.97|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 545.7860107421875 2 545.319117 1088.62368 NaN NaN NaN NaN NaN NaN NaN 32.628 1 32.628 32.128 33.128 0 0 0 0 0.39598 1 5607 5607 1.6526 0 1 + 25228 24721 15675 15684 29434 29434 0.08291405196496271 LRDFVYDSCY 10 Unmodified _LRDFVYDSCY_ 0 0 0 LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|8|2|sense;LTR2_dup34|chr1:148406830-148407280:+|1.293760658508568|0.1054706718405862|3.62|150.0|3|1|sense;LTR2_dup32|chr1:120946699-120947147:+|1.915118963656172|0.0509717626343149|5.23|151.0|8|2|sense LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|8|2|sense LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 641.2880859375 2 640.784438 1279.55432 0.46381 0.0002972 1.7684 0.0011332 2.2323 0.0014304 640.7860236455814 37.571 0.051182 41.288 41.249 41.3 3.7164 6 5 2 0 0 0 0.56309 1 6446 6446 1.6526 0.17072 1 47165 25229 15596 15676 15685 29435 29435 -0.07427143333529784 LRDFVYDSCY 10 Unmodified _LRDFVYDSCY_ 0 0 0 LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|8|2|sense;LTR2_dup34|chr1:148406830-148407280:+|1.293760658508568|0.1054706718405862|3.62|150.0|3|1|sense;LTR2_dup32|chr1:120946699-120947147:+|1.915118963656172|0.0509717626343149|5.23|151.0|8|2|sense LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|8|2|sense LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|8|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 640.784438 1279.55432 0.47207 0.0003025 2.7051 0.0017334 3.1771 0.0020359 640.7861492011474 37.799 0.064133 41.305 41.277 41.341 3.5052 0.0084454 0.00068741 NaN 1.6526 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 95430 25230 15596 15676 15685 -0.07427143333529784 LRDKLESI 8 Unmodified _LRDKLESI_ 0 0 0 REV__L1MA4_dup6795|chr10:63245955-63246685:+|2.11469126429645|0.0144097286338071|7.2|151.0|13|2|sense REV__L1MA4_dup6795|chr10:63245955-63246685:+|2.11469126429645|0.0144097286338071|7.2|151.0|13|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.28741455078125 2 487.287474 972.560395 0.0081885 3.9902E-06 -0.19954 -9.7235E-05 -0.19135 -9.3245E-05 487.28735718275624 29.157 0.77298 29.157 28.84 29.613 0 136 66 3 0 0 0 0.82752 1 4583 4583 17.113 0 1 168500 + 25231 24064 15677 15686 29436 29436 0.0730174296027144 LRDKLLARA 9 Unmodified _LRDKLLARA_ 0 0 0 REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|7|1|sense REV__L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 528.33837890625 2 528.337833 1054.66111 NaN NaN NaN NaN NaN NaN NaN 91.19 1 94.652 94.152 95.152 3.4613 0 0 0 0.4007 1 22586 22586 0.52476 0 1 + 25232 30245 15678 15687 29437 29437 0.13596819733811571 LRDLQAKK 8 Unmodified _LRDLQAKK_ 0 0 0 REV__ENSG00000140548|ENST00000268154|ZNF710 REV__ENSG00000140548|ENST00000268154|ZNF710 MULTI-MSMS UPN47_class_I_Rep_1 2 486.3033142089844 2 486.303458 970.592364 -0.25039 -0.00012176 0.080398 3.9098E-05 -0.16999 -8.2666E-05 486.3034032661533 41.294 1.3214 44.966 44.493 45.815 3.6719 251 100 4 0 0 0 0.82752 1 8437 8437 4.756 0.42677 1 939160 + 25233 19349 15679 15688 29438 29438 0.10589155434092845 LRDLSELH 8 Unmodified _LRDLSELH_ 0 0 0 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 MULTI-MSMS UPN47_class_I_Rep_2 3 491.7696228027344 2 491.769448 981.524344 -0.10217 -5.0242E-05 0.16882 8.3022E-05 0.066658 3.278E-05 491.76968992046136 39.429 0.55139 42.808 42.522 43.073 3.3785 37 31 2 0 0 0 0.82752 1 7719 7719 10.824 0 1 59156 + 25234 18750 15680 15689 29439 29439 0.03284285783422547 LRDPLLVR 8 Unmodified _LRDPLLVR_ 0 0 0 L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|350|3|anti-sense L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|350|3|anti-sense L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|350|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.31390380859375 2 491.313826 980.613099 -0.31931 -0.00015688 0.33677 0.00016546 0.017461 8.5787E-06 491.3139001186543 23.784 1.0582 27.513 27.128 28.186 3.7298 180 88 3 0 0 0 0.82752 3 2907 2907;3091;3128 4.756 0 1 331450 25235 14435 15681 15690 29440;29441;29442 29440 0.1220174581376341 LRDPRGAVRLS 11 Unmodified _LRDPRGAVRLS_ 0 0 0 REV__nc|ENSG00000144306|Q0VDG4-2|SCRN3 REV__nc|ENSG00000144306|Q0VDG4-2|SCRN3 MULTI-MSMS UPN48_class_I_Rep_2 6 620.3681640625 2 620.367653 1238.72075 0.49289 0.00030578 0.92477 0.0005737 1.4177 0.00087947 620.3676665506292 107.84 0.12061 111.52 111.47 111.59 3.6783 22 11 3 0 0 0 0.47271 1 25525 25525 8.4443 0 1 4888600 + 25236 32002 15682 15691 29443 29443 0.11094090677170243 LRDRCFKYI 9 Unmodified _LRDRCFKYI_ 0 0 0 HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|88|2|sense;HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|75|2|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|88|2|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|88|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 607.329833984375 2 607.32915 1212.64375 0.17616 0.00010699 0.29339 0.00017819 0.46956 0.00028517 607.3292985342564 46.713 0.85658 50.413 50.121 50.978 3.6999 106 55 2 0 0 0 0.4823 2 9932 9932;10024 0.45834 0.057624 1 165090 25237 8096 15683 15692 29444;29445 29444 0.0459315613650233 LRDYSSKR 8 Unmodified _LRDYSSKR_ 0 0 0 REV__ENST00000298119.8_1_14:42077618-42077753:+|nuORF REV__ENST00000298119.8_1_14:42077618-42077753:+|nuORF MSMS UPN46_class_I_Rep_3 1 512.7259521484375 2 512.780348 1023.54614 NaN NaN NaN NaN NaN NaN NaN 47.238 1 47.238 46.738 47.738 0 0 0 0 0.40659 1 9752 9752 1.8442 1.0506 1 + 25238 21661 15684 15693 29446 29446 0.035310905319988706 LREDTLRVL 9 Unmodified _LREDTLRVL_ 0 0 0 nc|ENSG00000126453|Q9HB09-2|BCL2L12;ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12 nc|ENSG00000126453|Q9HB09-2|BCL2L12 nc|ENSG00000126453|Q9HB09-2|BCL2L12 MULTI-MSMS UPN48_class_I_Rep_2 6 557.833251953125 2 557.83258 1113.65061 0.51613 0.00028792 -0.29516 -0.00016465 0.22097 0.00012326 557.8324833968329 51.87 0.26585 55.509 55.37 55.636 3.639 42 28 2 0 0 0 0.24936 1 10745 10745 17.113 4.2403 1 279610 25239 2533 15685 15694 29447 29447 0.09832792288716519 LREDTLRVL 9 Unmodified _LREDTLRVL_ 0 0 0 nc|ENSG00000126453|Q9HB09-2|BCL2L12;ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12 nc|ENSG00000126453|Q9HB09-2|BCL2L12 nc|ENSG00000126453|Q9HB09-2|BCL2L12 MULTI-MSMS UPN48_class_I_Rep_3 7 557.8329467773438 2 557.83258 1113.65061 0.28 0.00015619 0.040809 2.2764E-05 0.3208 0.00017896 557.8325908174322 51.854 0.54697 55.451 55.385 55.932 3.5979 77 62 2 0 0 0 0.24936 1 10655 10655 17.113 1.3743 1 415680 25240 2533 15685 15694 29448 29448 0.09832792288716519 LREKEKTKRQR 11 Unmodified _LREKEKTKRQR_ 0 0 0 ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 491.2990417480469 3 491.298707 1470.87429 0.24272 0.00011925 0.78216 0.00038427 1.0249 0.00050352 491.2987695916667 107.25 0.2341 110.94 110.72 110.95 3.6899 54 28 3 0 0 0 0.68081 1 25267 25267 0.45452 0.046251 1 2264200 25241 7256 15686 15695 29449 29449 0.15769080722816398 LREKEKTKRQR 11 Unmodified _LREKEKTKRQR_ 0 0 0 ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 491.298707 1470.87429 0.48785 0.00023968 0.71548 0.00035152 1.2033 0.00059119 491.29896824600917 107.17 0.15382 110.7 110.63 110.78 3.5345 0.03248 -0.00029507 NaN 0.45452 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 331370 25242 7256 15686 15695 0.15769080722816398 LREKEKTKRQR 11 Unmodified _LREKEKTKRQR_ 0 0 0 ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 491.298707 1470.87429 0.26593 0.00013065 1.3354 0.00065607 1.6013 0.00078671 491.29936018008476 106.95 0.089035 110.49 110.44 110.53 3.5382 -0.17911 0.00061858 NaN 0.45452 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 103350 25243 7256 15686 15695 0.15769080722816398 LREKEKTKRQR 11 Unmodified _LREKEKTKRQR_ 0 0 0 ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF ENST00000525556.1_1_8:61878844-61880304:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 491.298707 1470.87429 0.24272 0.00011925 0.78216 0.00038427 1.0249 0.00050352 491.2987695916667 107.25 0.2341 110.94 110.72 110.95 3.6899 0.27248 -0.0001968 NaN 0.45452 54 28 3 NaN NaN NaN NaN 0 NaN NaN 0 2264200 25244 7256 15686 15695 0.15769080722816398 LREKFEHIQ 9 Unmodified _LREKFEHIQ_ 0 0 0 nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000154760|ENST00000285013|SLFN13 nc|ENSG00000154760|Q68D06-2|SLFN13 nc|ENSG00000154760|Q68D06-2|SLFN13 MULTI-MSMS UPN48_class_I_Rep_2 6 600.3305053710938 2 600.330205 1198.64586 0.41438 0.00024876 -0.11463 -6.8815E-05 0.29975 0.00017995 600.3301238068926 43.172 0.96346 46.934 46.526 47.489 3.7617 162 75 3 0 0 0 0.20317 1 8034 8034 20.415 1.0526 1 335880 25245 3682 15687 15696 29450 29450 0.054479081459248846 LREKLTAL 8 Unmodified _LREKLTAL_ 0 0 0 L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|122|3|sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|122|3|sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|122|3|sense MSMS UPN47_class_I_Rep_3 4 472.2881774902344 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 87.923 1 91.31 90.81 91.81 3.3873 0 0 0 0.40738 1 22046 22046 0.79363 0 1 25246 13700 15688 15697 29451 29451 0.11262637202537462 LREKYREF 8 Unmodified _LREKYREF_ 0 0 0 L1MC1_dup1304|chr2:54001834-54002342:-|1.871164615685307|0.0305626652674478|5.94|151.0|21|1|anti-sense L1MC1_dup1304|chr2:54001834-54002342:-|1.871164615685307|0.0305626652674478|5.94|151.0|21|1|anti-sense L1MC1_dup1304|chr2:54001834-54002342:-|1.871164615685307|0.0305626652674478|5.94|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.8115844726562 2 570.811648 1139.60874 0.4106 0.00023437 -0.078135 -4.4601E-05 0.33246 0.00018977 570.8116213117154 43.195 0.6489 46.706 46.406 47.055 3.5103 94 51 2 0 0 0 0.82752 1 8005 8005 0.69038 0 1 220840 25247 11116 15689 15698 29452 29452 0.0445223660017291 LRELLARAR 9 Unmodified _LRELLARAR_ 0 0 0 REV__ENSG00000185163|ENST00000397333|DDX51 REV__ENSG00000185163|ENST00000397333|DDX51 MSMS UPN47_class_I_Rep_3 4 549.3372192382812 2 549.348732 1096.68291 NaN NaN NaN NaN NaN NaN NaN 109.7 1 113.23 112.73 113.73 3.5347 0 0 0 0.38784 1 26956 26956 3.5965 0 1 + 25248 20845 15690 15699 29453 29453 0.13843624482365158 LRELSLWLDPL 11 Unmodified _LRELSLWLDPL_ 0 0 0 ENST00000546652.6_2_12:53848615-53849765:+|nuORF ENST00000546652.6_2_12:53848615-53849765:+|nuORF ENST00000546652.6_2_12:53848615-53849765:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 452.2633361816406 3 452.262489 1353.76564 0.22992 0.00010398 0.85338 0.00038595 1.0833 0.00048993 452.26278886141455 60.117 0.52358 63.604 63.414 63.937 3.4868 75 44 3 0 0 0 0.67356 1 13221 13221 1.1098 0.6038 1 154290 25249 7379 15691 15700 29454 29454 0.10290476699856299 LRENPFHA 8 Unmodified _LRENPFHA_ 0 0 0 MLT1C_dup6732|chr6:24958714-24958952:-|1.10374481299515|0.0023968028177805|8.85|150.0|16|3|anti-sense;MLT1C_dup18034|chr19:3160625-3160937:-|1.9479785973326424|0.0494574165614052|5.3|151.0|16|2|anti-sense MLT1C_dup6732|chr6:24958714-24958952:-|1.10374481299515|0.0023968028177805|8.85|150.0|16|3|anti-sense MLT1C_dup6732|chr6:24958714-24958952:-|1.10374481299515|0.0023968028177805|8.85|150.0|16|3|anti-sense MSMS UPN48_class_I_Rep_2 6 492.25640869140625 2 492.256508 982.498464 NaN NaN NaN NaN NaN NaN NaN 32.175 1 35.825 35.325 36.325 3.6497 0 0 0 0.40604 1 4939 4939 2.5775 0 1 25250 16306 15692 15701 29455 29455 0.00651436331804689 LRERLTELERK 11 Unmodified _LRERLTELERK_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS UPN46_class_I_Rep_3 1 481.95391845703125 3 481.619447 1441.83651 -0.33441 -0.00016106 -0.093292 -4.4931E-05 -0.4277 -0.00020599 481.61936417994013 13.057 0.3672 13.057 12.98 13.347 0 66 38 2 0 0 0 0.68024 1 343 343 0.50596 0 1 98526 25251 5783 15693 15702 29456 29456 0.13326569737319005 LRERRCRR 8 Unmodified _LRERRCRR_ 0 0 0 ENST00000592659.1_1_19:11688743-11689709:-|nuORF ENST00000592659.1_1_19:11688743-11689709:-|nuORF ENST00000592659.1_1_19:11688743-11689709:-|nuORF MSMS UPN47_class_I_Rep_2 3 572.7639770507812 2 572.833257 1143.65196 NaN NaN NaN NaN NaN NaN NaN 106.63 1 110.16 109.66 110.66 3.5345 0 0 0 0.40625 1 25820 25820 2.3027 0 1 25252 7635 15694 15703 29457 29457 0.0858814789646658 LREVMLRKKH 10 Unmodified _LREVMLRKKH_ 0 0 0 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 MULTI-MSMS UPN48_class_I_Rep_3 7 437.6020202636719 3 437.267691 1308.78124 0.022918 1.0021E-05 -0.58923 -0.00025765 -0.56632 -0.00024763 437.26723041987026 51.32 1.548 54.931 53.759 55.307 3.6105 213 108 3 0 0 0 0.56273 1 10372 10372 1.9064 0.57673 1 326520 + 25253 19174 15695 15704 29458 29458 0.13920484735899663 LREVMLRKKH 10 Unmodified _LREVMLRKKH_ 0 0 0 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 MULTI-MATCH UPN46_class_I_Rep_3 1 3 437.267691 1308.78124 0.072813 3.1839E-05 -0.26546 -0.00011608 -0.19265 -8.424E-05 437.2675808403556 55.058 0.23805 55.058 54.903 55.141 0 0.10497 0.00041685 NaN 1.9064 36 26 2 NaN NaN NaN NaN 0 NaN NaN 0 173040 + 25254 19174 15695 15704 0.13920484735899663 LREVMLRKKH 10 Unmodified _LREVMLRKKH_ 0 0 0 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 REV__nc|ENSG00000136153|Q8WWI1-4|LMO7 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 437.267691 1308.78124 0.10088 4.411E-05 -0.66503 -0.0002908 -0.56416 -0.00024669 437.26718877345627 51.196 1.3606 54.864 53.812 55.173 3.6679 -0.089188 -0.00010731 NaN 1.9064 196 86 3 NaN NaN NaN NaN 0 NaN NaN 0 400340 + 25255 19174 15695 15704 0.13920484735899663 LRFHFPLP 8 Unmodified _LRFHFPLP_ 0 0 0 ENST00000590958.5_2_17:40714226-40714449:+|nuORF ENST00000590958.5_2_17:40714226-40714449:+|nuORF ENST00000590958.5_2_17:40714226-40714449:+|nuORF MSMS UPN48_class_I_Rep_1 5 513.7977905273438 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 98.14 1 101.75 101.25 102.25 3.6065 0 0 0 0.40746 1 23677 23677 0.69038 0 1 25256 7617 15696 15705 29459 29459 0.06930378130596182 LRFHNICNK 9 Unmodified _LRFHNICNK_ 0 0 0 REV__L1M4c_dup889|chr4:139435259-139436171:-|1.5524902454483147|0.0579340651785636|4.74|151.0|28|3|sense REV__L1M4c_dup889|chr4:139435259-139436171:-|1.5524902454483147|0.0579340651785636|4.74|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 573.0556640625 2 572.805842 1143.59713 NaN NaN NaN NaN NaN NaN NaN 56.627 1 56.627 56.127 57.127 0 0 0 0 0.39518 1 12361 12361 1.8442 0.36234 1 + 25257 24609 15697 15706 29460 29460 0.031077163051804746 LRFLKIIFRF 10 Unmodified _LRFLKIIFRF_ 0 0 0 L1MC1_dup4484|chr5:87296117-87298111:-|1.8559547248360435|0.091329747606151|4.34|151.0|99|2|anti-sense L1MC1_dup4484|chr5:87296117-87298111:-|1.8559547248360435|0.091329747606151|4.34|151.0|99|2|anti-sense L1MC1_dup4484|chr5:87296117-87298111:-|1.8559547248360435|0.091329747606151|4.34|151.0|99|2|anti-sense MSMS UPN48_class_I_Rep_1 5 451.62432861328125 3 451.623692 1351.84925 NaN NaN NaN NaN NaN NaN NaN 45.383 1 48.899 48.399 49.399 3.5162 0 0 0 0.53105 1 8745 8745 0.77653 0.27058 1 25258 11151 15698 15707 29461 29461 0.18739677658186338 LRFPPTPLQTL 11 Unmodified _LRFPPTPLQTL_ 0 0 0 ENST00000585806.5_1_19:55663204-55667835:-|nuORF ENST00000585806.5_1_19:55663204-55667835:-|nuORF ENST00000585806.5_1_19:55663204-55667835:-|nuORF MSMS UPN46_class_I_Rep_3 1 641.8824462890625 2 641.87953 1281.74451 NaN NaN NaN NaN NaN NaN NaN 92.294 1 92.294 91.794 92.794 0 0 0 0 0.38417 1 22330 22330 1.0715 0.10919 1 25259 7582 15699 15708 29462 29462 0.11490511390979918 LRFPPTPLQTL 11 Unmodified _LRFPPTPLQTL_ 0 0 0 ENST00000585806.5_1_19:55663204-55667835:-|nuORF ENST00000585806.5_1_19:55663204-55667835:-|nuORF ENST00000585806.5_1_19:55663204-55667835:-|nuORF MSMS UPN47_class_I_Rep_3 4 641.8829956054688 2 641.87953 1281.74451 NaN NaN NaN NaN NaN NaN NaN 89.543 1 92.937 92.437 93.437 3.3931 0 0 0 0.38417 1 22447 22447 1.0715 0.10919 1 25260 7582 15699 15708 29463 29463 0.11490511390979918 LRFPPTPLQTL 11 Unmodified _LRFPPTPLQTL_ 0 0 0 ENST00000585806.5_1_19:55663204-55667835:-|nuORF ENST00000585806.5_1_19:55663204-55667835:-|nuORF ENST00000585806.5_1_19:55663204-55667835:-|nuORF MSMS UPN48_class_I_Rep_3 7 641.8826904296875 2 641.87953 1281.74451 NaN NaN NaN NaN NaN NaN NaN 86.667 1 90.458 89.958 90.958 3.7905 0 0 0 0.38417 1 20567 20567 2.7352 1.2533 1 25261 7582 15699 15708 29464 29464 0.11490511390979918 LRFSDILF 8 Unmodified _LRFSDILF_ 0 0 0 REV__L1MC1_dup12739|chr21:44148770-44150012:-|2.0870060713026297|0.1905980378868259|3.45|151.0|61|3|anti-sense REV__L1MC1_dup12739|chr21:44148770-44150012:-|2.0870060713026297|0.1905980378868259|3.45|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 505.7867736816406 2 505.78711 1009.55967 0.16936 8.5659E-05 -0.14098 -7.1307E-05 0.028375 1.4352E-05 505.78700220863345 57.476 0.53692 60.644 60.455 60.992 3.1681 86 45 2 0 0 0 0.82752 1 13258 13258 10.824 0 1 129490 + 25262 26523 15700 15709 29465 29465 0.05526948311239721 LRGAKAKWRAP 11 Unmodified _LRGAKAKWRAP_ 0 0 0 REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 627.38330078125 2 627.383106 1252.75166 0.42853 0.00026885 -1.2292 -0.00077119 -0.80069 -0.00050234 627.8841036982207 103.62 0.35986 107.25 107.15 107.51 3.6209 84 57 3 0 0 0 0.65271 1 24988 24988 2.9952 0.26005 1 53767000 + 25263 17185 15701 15710 29466 29466 0.1353928878206716 LRGAKAKWRAP 11 Unmodified _LRGAKAKWRAP_ 0 0 0 REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 627.3823852539062 2 627.383106 1252.75166 0.42852 0.00026885 -0.8287 -0.00051991 -0.40018 -0.00025107 627.8840147051917 104.41 0.43399 108.03 107.93 108.36 3.6247 167 62 3 0 0 0 0.65271 1 25231 25231 2.9952 0.26005 1 53198000 + 25264 17185 15701 15710 29467 29467 0.1353928878206716 LRGAKAKWRAP 11 Unmodified _LRGAKAKWRAP_ 0 0 0 REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 627.382080078125 2 627.383106 1252.75166 0.60297 0.00037829 -1.2493 -0.0007838 -0.64634 -0.0004055 627.3824632728158 103.45 0.50217 107.19 106.91 107.41 3.7434 152 79 3 0 0 0 0.65271 1 24399 24399 2.9952 0.26005 1 41324000 + 25265 17185 15701 15710 29468 29468 0.1353928878206716 LRGAKAKWRAP 11 Unmodified _LRGAKAKWRAP_ 0 0 0 REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense REV__AluSx1_dup83787|chr14:77550621-77550935:+|1.611445571224833|0.0135428104734007|6.89|151.0|8|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 627.3834228515625 2 627.383106 1252.75166 0.60276 0.00037816 -0.86913 -0.00054528 -0.26637 -0.00016712 627.8839921544555 104.55 0.21893 108.27 108.19 108.41 3.7192 68 30 3 0 0 0 0.65271 1 24684 24684 2.9952 0.26005 1 13918000 + 25266 17185 15701 15710 29469 29469 0.1353928878206716 LRGKVQVSL 9 Unmodified _LRGKVQVSL_ 0 0 0 REV__Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|17|2|sense REV__Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.31903076171875 2 500.319109 998.623664 -0.2328 -0.00011647 0.17765 8.8881E-05 -0.055151 -2.7593E-05 500.3191243457832 38.68 0.93217 42.345 41.997 42.929 3.6652 93 61 2 0 0 0 0.37599 1 7511 7511 9.3831 0 1 154260 + 25267 32369 15702 15711 29470 29470 0.12429728468180201 LRGTETKQMH 10 Unmodified _LRGTETKQMH_ 0 0 0 REV__L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|106|3|sense REV__L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|106|3|sense MSMS UPN47_class_I_Rep_1 2 600.8142700195312 2 600.811322 1199.60809 NaN NaN NaN NaN NaN NaN NaN 74.674 1 78.068 77.568 78.568 3.3937 0 0 0 0.53105 1 18391 18391 1.1933 0.59184 1 + 25268 30267 15703 15712 29471 29471 0.016270738888351843 LRHESEKKKK 10 Unmodified _LRHESEKKKK_ 0 0 0 REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 641.8820190429688 2 641.883136 1281.75172 NaN NaN NaN NaN NaN NaN NaN 90.435 1 90.435 89.935 90.935 0 0 0 0 0.53105 1 21810 21810 1.4819 0 1 + 25269 26483 15704 15713 29472 29472 0.12211243991373522 LRHESEKKKK 10 Unmodified _LRHESEKKKK_ 0 0 0 REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.8831176757812 2 641.883136 1281.75172 0.4469 0.00028686 -1.0268 -0.0006591 -0.57992 -0.00037224 641.8824025228231 87.404 0.13167 91.022 90.936 91.068 3.6187 18 15 2 0 0 0 0.56333 1 20938 20938 1.4819 0 1 98206 + 25270 26483 15704 15713 29473 29473 0.12211243991373522 LRHESEKKKK 10 Unmodified _LRHESEKKKK_ 0 0 0 REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 641.8817138671875 2 641.883136 1281.75172 0.44288 0.00028428 -0.9834 -0.00063123 -0.54052 -0.00034695 641.8824156598192 89.223 0.38798 92.848 92.755 93.143 3.6255 69 42 2 0 0 0 0.56333 1 21403 21403 1.4819 0 1 139530 + 25271 26483 15704 15713 29474 29474 0.12211243991373522 LRHESEKKKK 10 Unmodified _LRHESEKKKK_ 0 0 0 REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|21|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 641.883136 1281.75172 0.49886 0.00032021 -1.0647 -0.00068339 -0.56581 -0.00036318 641.8824816216902 87.453 0.030853 91.181 91.162 91.192 3.7279 0.079176 -4.5473E-05 NaN 1.4819 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 48150 + 25272 26483 15704 15713 0.12211243991373522 LRHHHRLH 8 Unmodified _LRHHHRLH_ 0 0 0 ENST00000465851.1_1_2:196545249-196581758:+|nuORF;ENSG00000196950.14,SLC39A10,chr2,+,I15.1,195728350,195734882|32|8.37|4|intron;ENSG00000196950|ENST00000359634|SLC39A10 ENST00000465851.1_1_2:196545249-196581758:+|nuORF ENST00000465851.1_1_2:196545249-196581758:+|nuORF MSMS UPN48_class_I_Rep_2 6 553.3154296875 2 553.315558 1104.61656 NaN NaN NaN NaN NaN NaN NaN 111.2 1 114.87 114.37 115.37 3.6666 0 0 0 0.40798 1 26451 26451 0 0 1 25273 5340 15705 15714 29475 29475 0.06843853430973468 LRHIAALRSG 10 Unmodified _LRHIAALRSG_ 0 0 0 nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 MSMS UPN48_class_I_Rep_1 5 547.8045043945312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 89.546 1 93.171 92.671 93.671 3.6255 0 0 0 0.53105 1 21508 21508 1.4819 0.15237 1 25274 5816 15706 15715 29476 29476 0.108990514482457 LRHKPLVPLHL 11 Unmodified _LRHKPLVPLHL_ 0 0 0 REV__ENST00000469672.5_1_14:74762559-74769587:-|nuORF REV__ENST00000469672.5_1_14:74762559-74769587:-|nuORF MSMS UPN46_class_I_Rep_3 1 441.29754638671875 3 441.61883 1321.83466 NaN NaN NaN NaN NaN NaN NaN 95.821 1 95.821 95.321 96.321 0 0 0 0 0.38417 1 23281 23281 0.50596 0.34663 1 + 25275 22497 15707 15716 29477 29477 0.18661605510078516 LRHKSRNVP 9 Unmodified _LRHKSRNVP_ 0 0 0 REV__ENSG00000165186|ENST00000379361|PTCHD1 REV__ENSG00000165186|ENST00000379361|PTCHD1 MSMS UPN48_class_I_Rep_3 7 553.830078125 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 81.795 1 85.48 84.98 85.98 3.685 0 0 0 0.39518 1 19375 19375 1.8442 0 1 + 25276 20108 15708 15717 29478 29478 0.09826167305504896 LRHLQDLVL 9 Unmodified _LRHLQDLVL_ 0 0 0 ENST00000446880.5_1_1:155288166-155291089:-|nuORF ENST00000446880.5_1_1:155288166-155291089:-|nuORF ENST00000446880.5_1_1:155288166-155291089:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.8374633789062 2 553.837665 1105.66078 0.13888 7.6916E-05 -0.33047 -0.00018303 -0.1916 -0.00010611 553.8375125588135 43.429 0.86548 46.671 46.338 47.203 3.2419 83 51 2 0 0 0 0.43982 2 8991 8991;9087 5.7319 0 1 91182 25277 6794 15709 15718 29479;29480 29479 0.11217400013924816 LRHRRREEVAE 11 Unmodified _LRHRRREEVAE_ 0 0 0 REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 484.7877502441406 3 484.27104 1449.79129 -0.17907 -8.6718E-05 -0.14589 -7.065E-05 -0.32496 -0.00015737 484.27098195649376 37.909 0.25903 41.297 41.11 41.369 3.3879 25 19 2 0 0 0 22.551 1 7247 7247 0.50596 0 1 81544 + 25278 22250 15710 15719 29481 29481 0.08438763994854526 LRHSKVKC 8 Unmodified _LRHSKVKC_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MSMS UPN47_class_I_Rep_1 2 485.7833557128906 2 485.784379 969.554204 NaN NaN NaN NaN NaN NaN NaN 26.527 1 30.289 29.789 30.789 3.7624 0 0 0 0.40625 1 3807 3807 2.3027 0 1 + 25279 21428 15711 15720 29482 29482 0.0682094624776255 LRHYIHQELQL 11 Unmodified _LRHYIHQELQL_ 0 0 0 REV__Charlie1a_dup5120|chr16:89395978-89396680:+|1.7117940193867256|0.0243264382219023|6.14|151.0|2|1|sense REV__Charlie1a_dup5120|chr16:89395978-89396680:+|1.7117940193867256|0.0243264382219023|6.14|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 483.936767578125 3 483.936887 1448.78883 0.13849 6.7021E-05 -0.36792 -0.00017805 -0.22943 -0.00011103 483.9366746846736 38.306 0.95899 41.966 41.557 42.516 3.6595 235 90 3 0 0 0 0.67462 2 6585 6585;6619 1.0136 1.0136 1 470780 + 25280 17338 15712 15721 29483;29484 29483 0.08238915537162939 LRIAWTIWAL 10 Unmodified _LRIAWTIWAL_ 0 0 0 L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|71|2|anti-sense L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|71|2|anti-sense L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|71|2|anti-sense MSMS UPN48_class_I_Rep_2 6 621.8726806640625 2 621.871508 1241.72846 NaN NaN NaN NaN NaN NaN NaN 70.935 1 74.47 73.97 74.97 3.5359 0 0 0 0.53105 1 16522 16522 1.6526 0 1 25281 15412 15713 15722 29485 29485 0.11726849944739115 LRIIFFAF 8 Unmodified _LRIIFFAF_ 0 0 0 L1MB3_dup6794|chr7:75675918-75676494:-|1.210086171965|0.0171851958279911|6.14|151.0|21|1|anti-sense L1MB3_dup6794|chr7:75675918-75676494:-|1.210086171965|0.0171851958279911|6.14|151.0|21|1|anti-sense L1MB3_dup6794|chr7:75675918-75676494:-|1.210086171965|0.0171851958279911|6.14|151.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.806640625 2 513.810388 1025.60622 0.23777 0.00012217 -4.3571 -0.0022387 -4.1193 -0.0021166 513.8068684196113 87.979 0.097755 91.426 91.353 91.451 3.4471 11 9 2 0 0 0 0.82752 1 21860 21860 0.79363 0 1 68553 25282 10446 15714 15723 29486 29486 0.0944443293317363 LRIIHYVLFVW 11 Unmodified _LRIIHYVLFVW_ 0 0 0 REV__THE1B-int_dup976|chr4:154285-155826:+|1.3611089698850556|0.1172561311684125|3.54|142.0|101|3|anti-sense REV__THE1B-int_dup976|chr4:154285-155826:+|1.3611089698850556|0.1172561311684125|3.54|142.0|101|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 486.7847595214844 3 486.958852 1457.85473 0.44051 0.00021451 0.32235 0.00015697 0.76286 0.00037148 486.95887066635447 94.677 0.30083 98.149 97.921 98.222 3.472 53 42 2 0 0 0 22.551 1 23312 23312 0.50596 0 1 86745 + 25283 32277 15715 15724 29487 29487 0.14411356450000312 LRILQNPI 8 Unmodified _LRILQNPI_ 0 0 0 ENSG00000123094|ENST00000689635|RASSF8 ENSG00000123094|ENST00000689635|RASSF8 ENSG00000123094|ENST00000689635|RASSF8 MULTI-SECPEP UPN47_class_I_Rep_2 3 484.2326354980469 2 483.808377 965.6022 -0.18076 -8.7451E-05 -0.57476 -0.00027807 -0.75551 -0.00036552 483.8079356837701 15.089 0.26755 18.475 18.339 18.607 3.3864 45 29 2 0 0 0 0.72333 1 717 717 2.3027 0 1 39649 25284 2406 15716 15725 29488 29488 0.11802343439444485 LRILSRMH 8 Unmodified _LRILSRMH_ 0 0 0 L1ME1_dup30353|chr21:37248384-37250021:+|1.0944103861004857|0.1287926596359207|3.09|151.0|117|3|anti-sense L1ME1_dup30353|chr21:37248384-37250021:+|1.0944103861004857|0.1287926596359207|3.09|151.0|117|3|anti-sense L1ME1_dup30353|chr21:37248384-37250021:+|1.0944103861004857|0.1287926596359207|3.09|151.0|117|3|anti-sense MSMS UPN46_class_I_Rep_3 1 513.3052368164062 2 513.305478 1024.5964 NaN NaN NaN NaN NaN NaN NaN 68.71 1 68.71 68.21 69.21 0 0 0 0 0.40746 1 15704 15704 0.69038 0 1 25285 12385 15717 15726 29489 29489 0.08508921656152779 LRILTKRK 8 Unmodified _LRILTKRK_ 0 0 0 REV__ENSG00000148848|ENST00000448723|ADAM12 REV__ENSG00000148848|ENST00000448723|ADAM12 MSMS UPN48_class_I_Rep_1 5 514.3589477539062 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 111.06 1 114.7 114.2 115.2 3.6326 0 0 0 0.40746 1 26945 26945 0.69038 0 1 + 25286 19603 15718 15727 29490 29490 0.19030000493103216 LRIRQRWLWR 10 Unmodified _LRIRQRWLWR_ 0 0 0 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 REV__nc|ENSG00000152620|Q4G0N4-3|NADK2 MSMS UPN46_class_I_Rep_3 1 494.970703125 3 494.968745 1481.8844 NaN NaN NaN NaN NaN NaN NaN 82.226 1 82.226 81.726 82.726 0 0 0 0 0.53105 1 19467 19467 0.15932 0.064481 1 + 25287 19690 15719 15728 29491 29491 0.16273733238722343 LRISFSVTV 9 Unmodified _LRISFSVTV_ 0 0 0 HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|207|3|sense;HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|112|2|sense;HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|154|3|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|206|3|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|207|3|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|207|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.305419921875 2 511.305667 1020.59678 0.12325 6.3021E-05 0.20493 0.00010478 0.32819 0.0001678 511.3054224906878 62.336 1.218 65.596 65.323 66.541 3.2594 109 79 3 0 0 0 0.14216 1 14690 14690 26.268 0.86883 1 227890 25288 8244 15720 15729 29492 29492 0.08730619857010424 LRKAPPLEQR 10 Unmodified _LRKAPPLEQR_ 0 0 0 REV__Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|53|2|sense REV__Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|53|2|sense MSMS UPN46_class_I_Rep_3 1 604.3671875 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 101.65 1 101.65 101.15 102.15 0 0 0 0 0.53105 1 24801 24801 0.40072 0 1 + 25289 32399 15721 15730 29493 29493 0.12459876308230378 LRKDKPGDIIR 11 Unmodified _LRKDKPGDIIR_ 0 0 0 ENST00000361337.2_1_20:39751926-39752103:+|nuORF ENST00000361337.2_1_20:39751926-39752103:+|nuORF ENST00000361337.2_1_20:39751926-39752103:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 437.6007080078125 3 437.601616 1309.78302 -0.045119 -1.9744E-05 -0.98966 -0.00043308 -1.0348 -0.00045282 437.93564481085616 97.728 0.39264 101.34 101.21 101.6 3.6088 72 48 2 0 0 0 0.67649 1 23597 23597 0.84494 0.21812 1 96269 25290 6326 15722 15731 29494 29494 0.14051817025506352 LRKDKPGDIIR 11 Unmodified _LRKDKPGDIIR_ 0 0 0 ENST00000361337.2_1_20:39751926-39752103:+|nuORF ENST00000361337.2_1_20:39751926-39752103:+|nuORF ENST00000361337.2_1_20:39751926-39752103:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 437.601616 1309.78302 0.15276 6.6847E-05 -1.5255 -0.00066757 -1.3728 -0.00060072 437.9353222898565 97.644 0.037544 101.43 101.4 101.44 3.7861 0.091167 -0.00046315 NaN 0.84494 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 15836 25291 6326 15722 15731 0.14051817025506352 LRKDKPGDIIR 11 Unmodified _LRKDKPGDIIR_ 0 0 0 ENST00000361337.2_1_20:39751926-39752103:+|nuORF ENST00000361337.2_1_20:39751926-39752103:+|nuORF ENST00000361337.2_1_20:39751926-39752103:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 437.601616 1309.78302 0.14165 6.1986E-05 -1.3944 -0.0006102 -1.2528 -0.00054821 437.60092481537384 97.342 0.15525 101.25 101.18 101.33 3.9084 -0.088625 -0.00029103 NaN 0.84494 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 119840 25292 6326 15722 15731 0.14051817025506352 LRKELESLL 9 Unmodified _LRKELESLL_ 0 0 0 nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C nc|ENSG00000137145|Q5VZ89-3|DENND4C nc|ENSG00000137145|Q5VZ89-3|DENND4C MULTI-MSMS UPN47_class_I_Rep_2 3 550.8367309570312 2 550.837331 1099.66011 0.034762 1.9148E-05 -0.22936 -0.00012634 -0.1946 -0.00010719 550.8371015875401 20.003 0.78798 23.399 23.114 23.902 3.3963 133 81 2 0 0 0 0.46869 1 2022 2022 3.9444 0 1 67327 25293 3009 15723 15732 29495 29495 0.11426560574227551 LRKERFERRQR 11 Unmodified _LRKERFERRQR_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-MSMS UPN48_class_I_Rep_1 5 525.6439819335938 3 525.309718 1572.90732 0.29325 0.00015405 -0.19029 -9.9962E-05 0.10296 5.4084E-05 525.6441303647886 96.39 0.14522 100 99.904 100.05 3.6124 25 18 2 0 0 0 0.68132 1 23197 23197 0.40827 0 1 63822 + 25294 18269 15724 15733 29496 29496 0.1437870756551547 LRKERFERRQR 11 Unmodified _LRKERFERRQR_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.39401 0.00020698 0.40661 0.0002136 0.80063 0.00042058 525.3096448131895 96.426 0.039413 100.21 100.19 100.23 3.7804 0.10218 0.00074312 NaN 0.40827 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 133100 + 25295 18269 15724 15733 0.1437870756551547 LRKEVLAAR 9 Unmodified _LRKEVLAAR_ 0 0 0 REV__ENSG00000115504|ENST00000431489|EHBP1 REV__ENSG00000115504|ENST00000431489|EHBP1 MSMS UPN46_class_I_Rep_3 1 528.3377075195312 2 528.337833 1054.66111 NaN NaN NaN NaN NaN NaN NaN 94.971 1 94.971 94.471 95.471 0 0 0 0 0.4007 1 23046 23046 0.52476 0 1 + 25296 18569 15725 15734 29497 29497 0.13596819733788834 LRKGKNAI 8 Unmodified _LRKGKNAI_ 0 0 0 L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|29|2|sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|29|2|sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|29|2|sense MSMS UPN47_class_I_Rep_3 4 450.2925109863281 2 450.292894 898.571235 NaN NaN NaN NaN NaN NaN NaN 38.344 1 41.586 41.086 42.086 3.2414 0 0 0 0.40746 1 7454 7454 0.69038 0 1 25297 8830 15726 15735 29498 29498 0.11789190125205096 LRKKGWGG 8 Unmodified _LRKKGWGG_ 0 0 0 MER21-int_dup439|chr8:94937497-94938280:+|1.427362471674382|0.1694565572521219|3.07|151.0|1|1|sense MER21-int_dup439|chr8:94937497-94938280:+|1.427362471674382|0.1694565572521219|3.07|151.0|1|1|sense MER21-int_dup439|chr8:94937497-94938280:+|1.427362471674382|0.1694565572521219|3.07|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 450.88519287109375 2 451.271961 900.52937 NaN NaN NaN NaN NaN NaN NaN 73.393 1 73.393 72.893 73.893 0 0 0 0 0.40738 1 17009 17009 0.79363 0 1 25298 15848 15727 15736 29499 29499 0.07512634436704957 LRKKKKKKKG 10 Unmodified _LRKKKKKKKG_ 0 0 0 REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF REV__ENST00000244745.3_2_6:21594329-21594497:+|nuORF MSMS UPN48_class_I_Rep_3 7 621.4476928710938 2 621.448249 1240.88194 NaN NaN NaN NaN NaN NaN NaN 59.48 1 62.997 62.497 63.497 3.5169 0 0 0 0.53105 1 12985 12985 0 0 1 + 25299 21513 15728 15737 29500 29500 0.2711388478103345 LRKKKPPLK 9 Unmodified _LRKKKPPLK_ 0 0 0 REV__ENSG00000127124|ENST00000372583|HIVEP3;REV__ENSG00000010818|ENST00000367603|HIVEP2;REV__ENSG00000095951|ENST00000379388|HIVEP1 REV__ENSG00000010818|ENST00000367603|HIVEP2 MSMS UPN47_class_I_Rep_1 2 554.3898315429688 2 554.389868 1106.76518 NaN NaN NaN NaN NaN NaN NaN 41.292 1 44.964 44.464 45.464 3.6719 0 0 0 0.4007 1 8276 8276 0.52476 0 1 + 25300 17574;18871;18055 15729 15738 29501 29501 0.21607146561291302 LRKKSKKLKM 10 Unmodified _LRKKSKKLKM_ 0 0 0 L1MD_dup507|chr1:211806679-211807893:+|2.82380037900399|0.0722976641261303|5.29|151.0|7|1|sense L1MD_dup507|chr1:211806679-211807893:+|2.82380037900399|0.0722976641261303|5.29|151.0|7|1|sense L1MD_dup507|chr1:211806679-211807893:+|2.82380037900399|0.0722976641261303|5.29|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 630.4187622070312 2 630.420842 1258.82713 NaN NaN NaN NaN NaN NaN NaN 108.5 1 112.13 111.63 112.63 3.6355 0 0 0 0.53105 1 26666 26666 1.4819 0 1 25301 11881 15730 15739 29502 29502 0.2080712991812561 LRKKYDKY 8 Unmodified _LRKKYDKY_ 0 0 0 nc|ENSG00000077232|Q8IXB1-3|DNAJC10;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10 nc|ENSG00000077232|Q8IXB1-3|DNAJC10 nc|ENSG00000077232|Q8IXB1-3|DNAJC10 MSMS UPN48_class_I_Rep_3 7 557.3238525390625 2 557.324391 1112.63423 NaN NaN NaN NaN NaN NaN NaN 74.718 1 78.284 77.784 78.784 3.5659 0 0 0 0.40746 1 17514 17514 0.69038 0 1 25302 1168 15731 15740 29503 29503 0.08241711122605011 LRKLLPSVNTA 11 Unmodified _LRKLLPSVNTA_ 0 0 0 HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|181|3|anti-sense;HERVS71-int_dup63|chr8:8142070-8144889:+|5.402362978131311|0.1720022878832018|4.97|151.0|182|3|anti-sense HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|181|3|anti-sense HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|181|3|anti-sense MSMS UPN47_class_I_Rep_1 2 404.5888366699219 3 404.587195 1210.73976 NaN NaN NaN NaN NaN NaN NaN 36.98 1 40.649 40.149 41.149 3.6692 0 0 0 0.38417 1 6966 6966 0.40827 0 1 25303 8420 15732 15741 29504 29504 0.14281627248237783 LRKNLRAQRP 10 Unmodified _LRKNLRAQRP_ 0 0 0 L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|45|2|sense L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|45|2|sense L1PA15_dup1737|chr4:13288571-13291338:-|1.1244863262125386|0.0747475877209666|3.91|151.0|45|2|sense MSMS UPN46_class_I_Rep_3 1 626.3867797851562 2 626.391462 1250.76837 NaN NaN NaN NaN NaN NaN NaN 107.78 1 107.78 107.28 108.28 0 0 0 0 0.53105 1 26292 26292 10.074 1.9184 1 25304 13883 15733 15742 29505 29505 0.1530178966800122 LRKNLYARGG 10 Unmodified _LRKNLYARGG_ 0 0 0 REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|21|2|sense REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 574.3382568359375 2 574.338364 1146.66217 NaN NaN NaN NaN NaN NaN NaN 22.68 1 26.24 25.74 26.74 3.5605 0 0 0 0.53105 1 2246 2246 0 0 1 + 25305 28832 15734 15743 29506 29506 0.09471034102648446 LRKPKLAL 8 Unmodified _LRKPKLAL_ 0 0 0 REV__ENST00000537638.6_1_12:57881209-57881347:+|nuORF REV__ENST00000537638.6_1_12:57881209-57881347:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 469.3277587890625 2 469.829112 937.643671 0.077462 3.6394E-05 -1.623 -0.00076254 -1.5456 -0.00072615 469.8259657976799 118.04 0.066673 121.66 121.63 121.69 3.6215 5 4 2 0 0 0 0.72333 1 28784 28784 0 0 1 6925.6 + 25306 22899 15735 15744 29507 29507 0.17235524198770236 LRKQIERVR 9 Unmodified _LRKQIERVR_ 0 0 0 ENST00000529978.1_1_8:12870155-12879550:+|nuORF;ENSG00000250305|ENST00000524591|TRMT9B ENST00000529978.1_1_8:12870155-12879550:+|nuORF ENST00000529978.1_1_8:12870155-12879550:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 599.8814086914062 2 599.380563 1196.74657 0.41423 0.00024828 -0.43784 -0.00026244 -0.023612 -1.4153E-05 599.3802989141963 95.309 0.47835 98.925 98.541 99.019 3.6167 139 59 3 0 0 0 0.50088 1 22858 22858 0.52476 0 1 902450 25307 5739 15736 15745 29508 29508 0.15606984919440947 LRKRYRPRRRK 11 Unmodified _LRKRYRPRRRK_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 MULTI-MSMS UPN48_class_I_Rep_2 6 529.3438720703125 3 529.009714 1584.00731 0.40916 0.00021645 -0.92907 -0.00049149 -0.51991 -0.00027504 529.3436387868355 77.377 0.045555 80.989 80.972 81.018 3.6116 6 2 3 0 0 0 0.68583 1 18317 18317 0 0 1 365450 + 25308 20114 15737 15746 29509 29509 0.2386698968998644 LRKRYRPRRRK 11 Unmodified _LRKRYRPRRRK_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN48_class_I_Rep_2 6 529.0091552734375 3 529.009714 1584.00731 NaN NaN NaN NaN NaN NaN NaN 78.866 1 82.499 81.999 82.999 3.6331 0 0 0 0.38417 1 18718 18718 0 0 1 + 25309 20114 15737 15746 29510 29510 0.2386698968998644 LRKRYRPRRRK 11 Unmodified _LRKRYRPRRRK_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN48_class_I_Rep_2 6 529.0093383789062 3 529.009714 1584.00731 NaN NaN NaN NaN NaN NaN NaN 78.986 1 82.619 82.119 83.119 3.6331 0 0 0 0.38417 1 18748 18748 0 0 1 + 25310 20114 15737 15746 29511 29511 0.2386698968998644 LRKRYRPRRRK 11 Unmodified _LRKRYRPRRRK_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN48_class_I_Rep_3 7 529.0094604492188 3 529.009714 1584.00731 NaN NaN NaN NaN NaN NaN NaN 75.846 1 79.429 78.929 79.929 3.5831 0 0 0 0.38417 1 17840 17840 0 0 1 + 25311 20114 15737 15746 29512 29512 0.2386698968998644 LRKRYRPRRRK 11 Unmodified _LRKRYRPRRRK_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN48_class_I_Rep_3 7 529.00927734375 3 529.009714 1584.00731 NaN NaN NaN NaN NaN NaN NaN 76.588 1 80.171 79.671 80.671 3.5831 0 0 0 0.38417 1 18043 18043 0 0 1 + 25312 20114 15737 15746 29513 29513 0.2386698968998644 LRKSKLYLV 9 Unmodified _LRKSKLYLV_ 0 0 0 L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|99|2|sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|99|2|sense L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|99|2|sense MSMS UPN47_class_I_Rep_2 3 560.3641357421875 2 560.366059 1118.71756 NaN NaN NaN NaN NaN NaN NaN 102.94 1 106.46 105.96 106.96 3.5231 0 0 0 0.40038 1 25040 25040 0.6015 0 1 25313 15182 15738 15747 29514 29514 0.16295447570428223 LRKVSRIEN 9 Unmodified _LRKVSRIEN_ 0 0 0 REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF MSMS UPN46_class_I_Rep_3 1 557.6296997070312 2 557.838197 1113.66184 NaN NaN NaN NaN NaN NaN NaN 64.774 1 64.774 64.274 65.274 0 0 0 0 0.3967 1 14603 14603 1.4819 0 1 + 25314 18097 15739 15748 29515 29515 0.10955614382851309 LRKWMKPYRRL 11 Unmodified _LRKWMKPYRRL_ 0 0 0 REV__THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense REV__THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 516.6448364257812 3 516.30989 1545.90784 0.2507 0.00012944 0.2199 0.00011354 0.4706 0.00024298 516.6443001255827 97.297 0.6124 100.91 100.51 101.12 3.6088 131 78 3 0 0 0 0.68478 1 23510 23510 0.094841 0.011491 1 330040 + 25315 32274 15740 15749 29516 29516 0.15672410961019523 LRKYRKFK 8 Unmodified _LRKYRKFK_ 0 0 0 REV__L1ME4b_dup349|chr1:44468336-44468620:+|3.39441959786311|0.0014853702367997|11.16|149.0|11|1|anti-sense REV__L1ME4b_dup349|chr1:44468336-44468620:+|3.39441959786311|0.0014853702367997|11.16|149.0|11|1|anti-sense MSMS UPN48_class_I_Rep_1 5 569.8635864257812 2 569.864018 1137.71348 NaN NaN NaN NaN NaN NaN NaN 63.645 1 67.103 66.603 67.603 3.4578 0 0 0 0.40746 1 14344 14344 0.69038 0 1 + 25316 28292 15741 15750 29517 29517 0.15013402867384684 LRLDHKRSFNF 11 Unmodified _LRLDHKRSFNF_ 0 0 0 MLT1G1_dup1377|chr6:24902951-24903461:-|1.776541738559667|0.0140913730697174|6.98|151.0|17|3|sense MLT1G1_dup1377|chr6:24902951-24903461:-|1.776541738559667|0.0140913730697174|6.98|151.0|17|3|sense MLT1G1_dup1377|chr6:24902951-24903461:-|1.776541738559667|0.0140913730697174|6.98|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.2636413574219 3 478.265115 1431.77352 0.17671 8.4515E-05 -0.7836 -0.00037477 -0.60689 -0.00029025 478.2646453509471 40.108 0.66857 43.849 43.654 44.322 3.7413 86 73 2 0 0 0 0.58817 1 7258 7258 5.5233 1.1171 1 149340 25317 16408 15742 15751 29518 29518 0.07490048739987287 LRLESPVP 8 Unmodified _LRLESPVP_ 0 0 0 L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|188|1|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|188|1|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|188|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 455.2670593261719 2 455.77146 909.528367 -0.49515 -0.00022568 -1.2103 -0.0005516 -1.7054 -0.00077728 455.7705694925701 30.871 0.064526 34.354 34.3 34.365 3.4821 7 5 2 0 0 0 0.72333 1 5144 5144 2.5775 0 1 28383 25318 14162 15743 15752 29519 29519 0.06998375277134983 LRLGPGMV 8 Unmodified _LRLGPGMV_ 0 0 0 ENST00000533077.5_1_11:67051600-67052038:+|nuORF ENST00000533077.5_1_11:67051600-67052038:+|nuORF ENST00000533077.5_1_11:67051600-67052038:+|nuORF MSMS UPN48_class_I_Rep_2 6 421.75128173828125 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 68.959 1 72.481 71.981 72.981 3.5216 0 0 0 0.40738 1 15941 15941 0.79363 0 1 25319 7307 15744 15753 29520 29520 0.05731067579165483 LRLGPGMV 8 Unmodified _LRLGPGMV_ 0 0 0 ENST00000533077.5_1_11:67051600-67052038:+|nuORF ENST00000533077.5_1_11:67051600-67052038:+|nuORF ENST00000533077.5_1_11:67051600-67052038:+|nuORF MSMS UPN48_class_I_Rep_3 7 421.7508850097656 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 69.076 1 72.585 72.085 73.085 3.5094 0 0 0 0.40738 1 15885 15885 0.79363 0 1 25320 7307 15744 15753 29521 29521 0.05731067579165483 LRLIPYFGY 9 Unmodified _LRLIPYFGY_ 0 0 0 L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|69|1|anti-sense;L1MA4_dup9467|chr19:9670255-9670706:+|1.444660314872696|0.027355685288568|5.72|151.0|24|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|157|3|anti-sense;L1MA3_dup3983|chr7:65891665-65892501:-|1.3275611765948825|0.0279403688425138|5.57|151.0|58|3|anti-sense L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|69|1|anti-sense L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|69|1|anti-sense MSMS UPN48_class_I_Rep_1 5 571.6887817382812 2 571.32386 1140.63317 NaN NaN NaN NaN NaN NaN NaN 85.363 1 88.969 88.469 89.469 3.6059 0 0 0 0.40038 1 20414 20414 0.6015 0 1 25321 9674 15745 15754 29522 29522 0.06847496753698579 LRLKGKPSK 9 Unmodified _LRLKGKPSK_ 0 0 0 REV__ENSG00000130957|ENST00000375337|FBP2 REV__ENSG00000130957|ENST00000375337|FBP2 MULTI-MSMS UPN47_class_I_Rep_1 2 513.8428344726562 2 513.842751 1025.67095 -0.23632 -0.00012143 0.41336 0.0002124 0.17704 9.0969E-05 513.8429130056071 17.908 0.93137 21.459 20.937 21.869 3.5504 154 112 2 0 0 0 0.46869 1 1410 1410 3.9444 0 1 51047 + 25322 18959 15746 15755 29523 29523 0.15914007739161207 LRLKTNNN 8 Unmodified _LRLKTNNN_ 0 0 0 AluSx_dup106626|chr19:24078030-24078317:-|1.073221352316693|0.1096230103009664|3.29|150.0|4|1|sense AluSx_dup106626|chr19:24078030-24078317:-|1.073221352316693|0.1096230103009664|3.29|150.0|4|1|sense AluSx_dup106626|chr19:24078030-24078317:-|1.073221352316693|0.1096230103009664|3.29|150.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 486.31024169921875 2 486.78289 971.551228 NaN NaN NaN NaN NaN NaN NaN 76.323 1 76.323 75.823 76.823 0 0 0 0 0.40643 1 17797 17797 2.0598 0 1 25323 271 15747 15756 29524 29524 0.0643139439459901 LRLLHRRQKRI 11 Unmodified _LRLLHRRQKRI_ 0 0 0 ENSG00000164099|ENST00000296498|PRSS12 ENSG00000164099|ENST00000296498|PRSS12 ENSG00000164099|ENST00000296498|PRSS12 MSMS UPN46_class_I_Rep_3 1 496.99444580078125 3 496.995182 1487.96372 NaN NaN NaN NaN NaN NaN NaN 62.537 1 62.537 62.037 63.037 0 0 0 0 0.38417 1 13986 13986 0 0 1 25324 4080 15748 15757 29525 29525 0.23925380192849843 LRLLKLFIL 9 Unmodified _LRLLKLFIL_ 0 0 0 REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|90|2|anti-sense REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|90|2|anti-sense MSMS UPN46_class_I_Rep_3 1 564.8961181640625 2 564.896995 1127.77944 NaN NaN NaN NaN NaN NaN NaN 39.055 1 39.055 38.555 39.555 0 0 0 0 0.4029 1 7481 7481 0 0 1 + 25325 30640 15749 15758 29526 29526 0.22065798989592622 LRLLLPRVRVG 11 Unmodified _LRLLLPRVRVG_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43477651-43478217:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MSMS UPN48_class_I_Rep_2 6 646.4373779296875 2 646.437881 1290.86121 NaN NaN NaN NaN NaN NaN NaN 111 1 114.67 114.17 115.17 3.669 0 0 0 0.38417 1 26399 26399 0.35063 0.043601 1 25326 4278 15750 15759 29527 29527 0.22741294401384948 LRLLQKLDRY 10 Unmodified _LRLLQKLDRY_ 0 0 0 ENST00000452398.5_1_3:19388190-19491848:+|nuORF;ENSG00000183960|ENST00000328405|KCNH8 ENST00000452398.5_1_3:19388190-19491848:+|nuORF ENST00000452398.5_1_3:19388190-19491848:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 440.2725830078125 3 439.938228 1316.79285 0.10175 4.4766E-05 -0.21544 -9.4779E-05 -0.11368 -5.0013E-05 439.9380910623386 50.636 0.29142 50.636 50.489 50.781 0 46 34 2 0 0 0 0.56317 1 10719 10719 1.5923 0.48253 1 315600 25327 5031 15751 15760 29528 29528 0.14713005030876047 LRLLQSVSA 9 Unmodified _LRLLQSVSA_ 0 0 0 REV__L1PBa1_dup134|chr5:66102264-66103140:+|2.7686450282259782|0.0544400243555044|5.67|151.0|34|1|anti-sense REV__L1PBa1_dup134|chr5:66102264-66103140:+|2.7686450282259782|0.0544400243555044|5.67|151.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.8035888671875 2 493.803291 985.59203 0.17427 8.6055E-05 0.47838 0.00023622 0.65265 0.00032228 493.8034360939538 47.983 0.49787 51.332 51.211 51.709 3.3492 40 30 2 0 0 0 0.35123 1 10351 10351 10.8 0 1 99546 + 25328 30673 15752 15761 29529 29529 0.09865735714231505 LRLLQSVSA 9 Unmodified _LRLLQSVSA_ 0 0 0 REV__L1PBa1_dup134|chr5:66102264-66103140:+|2.7686450282259782|0.0544400243555044|5.67|151.0|34|1|anti-sense REV__L1PBa1_dup134|chr5:66102264-66103140:+|2.7686450282259782|0.0544400243555044|5.67|151.0|34|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 493.803291 985.59203 0.17427 8.6055E-05 0.47838 0.00023622 0.65265 0.00032228 493.8034360939538 47.983 0.49787 51.332 51.211 51.709 3.3492 -0.071044 0.0002036 NaN 10.8 40 30 2 NaN NaN NaN NaN 0 NaN NaN 0 99546 + 25329 30673 15752 15761 0.09865735714231505 LRLLRIRIL 9 Unmodified _LRLLRIRIL_ 0 0 0 HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|10|2|sense HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|10|2|sense HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 583.416015625 2 583.416417 1164.81828 NaN NaN NaN NaN NaN NaN NaN 102.47 1 105.99 105.49 106.49 3.5151 0 0 0 0.4029 1 24951 24951 0 0 1 25330 8059 15753 15762 29530 29530 0.24246524343971032 LRLPEPSLLTL 11 Unmodified _LRLPEPSLLTL_ 0 0 0 ENST00000535177.1_1_11:61120996-61124198:-|nuORF ENST00000535177.1_1_11:61120996-61124198:-|nuORF ENST00000535177.1_1_11:61120996-61124198:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 626.3866577148438 2 626.387188 1250.75982 0.49473 0.0003099 1.8159 0.0011374 2.3106 0.0014473 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.59712 1 24467 24467 5.2969 1.7004 1 107270000 25331 7325 15754 15763 29531 29531 0.14447378188197035 LRLPPLYSPL 10 Unmodified _LRLPPLYSPL_ 0 0 0 REV__L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|188|1|anti-sense REV__L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|188|1|anti-sense MSMS UPN47_class_I_Rep_1 2 584.859375 2 584.858067 1167.70158 NaN NaN NaN NaN NaN NaN NaN 84.008 1 87.574 87.074 88.074 3.5655 0 0 0 0.53105 1 21018 21018 1.6526 0 1 + 25332 29457 15755 15764 29532 29532 0.12443741333549951 LRLRAIYLP 9 Unmodified _LRLRAIYLP_ 0 0 0 REV__AluSx1_dup2996|chr1:40379556-40379830:-|1.0734850380898209|0.0373707842060271|4.84|151.0|11|3|sense REV__AluSx1_dup2996|chr1:40379556-40379830:-|1.0734850380898209|0.0373707842060271|4.84|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 557.85888671875 2 557.858401 1113.70225 NaN NaN NaN NaN NaN NaN NaN 62.666 1 66.176 65.676 66.676 3.5104 0 0 0 0.38299 1 13948 13948 4.756 0 1 + 25333 17172 15756 15765 29533 29533 0.14994580773259258 LRLREHPGH 9 Unmodified _LRLREHPGH_ 0 0 0 REV__ENSG00000253304|ENST00000521452|TMEM200B REV__ENSG00000253304|ENST00000521452|TMEM200B MSMS UPN48_class_I_Rep_3 7 557.8165283203125 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 25.798 1 29.565 29.065 30.065 3.7663 0 0 0 0.39428 1 3187 3187 2.0598 0 1 + 25334 21362 15757 15766 29534 29534 0.06329594271414862 LRLRPLARQL 10 Unmodified _LRLRPLARQL_ 0 0 0 REV__ENST00000394243.5_1_5:150030299-150030545:+|nuORF REV__ENST00000394243.5_1_5:150030299-150030545:+|nuORF MSMS UPN48_class_I_Rep_2 6 618.4052124023438 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 79.467 1 83.1 82.6 83.6 3.6331 0 0 0 0.53105 1 18880 18880 1.4819 0.28856 1 + 25335 22102 15758 15767 29535 29535 0.19060148333232974 LRLSRRHR 8 Unmodified _LRLSRRHR_ 0 0 0 REV__ENSG00000130193|ENST00000336138|THEM6 REV__ENSG00000130193|ENST00000336138|THEM6 MSMS UPN47_class_I_Rep_3 4 547.3458862304688 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 99.234 1 102.67 102.17 103.17 3.4328 0 0 0 0.40746 1 24546 24546 0.69038 0 1 + 25336 18930 15759 15768 29536 29536 0.13144695636560755 LRLYFFMC 8 Unmodified _LRLYFFMC_ 0 0 0 REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|138|2|anti-sense REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|138|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7703857421875 2 546.772091 1091.52963 NaN NaN NaN NaN NaN NaN NaN 115.53 1 119.04 118.54 119.54 3.5039 0 0 0 0.40738 1 28171 28171 0.79363 0 1 + 25337 25086 15760 15769 29537 29537 -0.012474499499603553 LRLYFFMC 8 Unmodified _LRLYFFMC_ 0 0 0 REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|138|2|anti-sense REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|138|2|anti-sense MSMS UPN47_class_I_Rep_3 4 546.77099609375 2 546.772091 1091.52963 NaN NaN NaN NaN NaN NaN NaN 116.83 1 120.27 119.77 120.77 3.4425 0 0 0 0.40738 1 28758 28758 0.79363 0.10326 1 + 25338 25086 15760 15769 29538 29538 -0.012474499499603553 LRMETSELK 9 Unmodified _LRMETSELK_ 0 0 0 REV__ENST00000447956.5_1_20:2187981-2193678:+|nuORF REV__ENST00000447956.5_1_20:2187981-2193678:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.7973022460938 2 553.797349 1105.58014 -0.15748 -8.7209E-05 0.19109 0.00010583 0.033616 1.8617E-05 553.7974930880306 32.021 1.52 35.32 34.78 36.3 3.2991 244 117 3 0 0 0 0.13244 1 5464 5464 27.629 0 1 625420 + 25339 22373 15761 15770 29539 29539 0.03157750908712842 LRMHPRKR 8 Unmodified _LRMHPRKR_ 0 0 0 MER4CL34_dup361|chr7:131090844-131091325:+|1.156664057770874|0.0536151484836236|4.43|151.0|22|1|anti-sense MER4CL34_dup361|chr7:131090844-131091325:+|1.156664057770874|0.0536151484836236|4.43|151.0|22|1|anti-sense MER4CL34_dup361|chr7:131090844-131091325:+|1.156664057770874|0.0536151484836236|4.43|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 547.3319702148438 2 547.329819 1092.64509 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.42 116.92 117.92 3.5109 0 0 0 0.40746 1 27718 27718 0.69038 0.088878 1 25340 16026 15762 15771 29540 29540 0.1024683501589152 LRMLAFLQ 8 Unmodified _LRMLAFLQ_ 0 0 0 REV__MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|40|3|anti-sense REV__MLT1E3_dup168|chr2:68225079-68225684:+|1.467036205199465|0.0229042113954093|6.0|150.0|40|3|anti-sense MSMS UPN47_class_I_Rep_1 2 496.2938232421875 2 496.291505 990.568457 NaN NaN NaN NaN NaN NaN NaN 96.321 1 100.1 99.597 100.6 3.7767 0 0 0 0.39819 1 23881 23881 8.5933 1.304 1 + 25341 31701 15763 15772 29541 29541 0.0727959867606387 LRMRKTFHL 9 Unmodified _LRMRKTFHL_ 0 0 0 REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|134|1|anti-sense REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|134|1|anti-sense MSMS UPN47_class_I_Rep_2 3 601.3534545898438 2 601.35296 1200.69137 NaN NaN NaN NaN NaN NaN NaN 81.657 1 85.041 84.541 85.541 3.3839 0 0 0 0.4007 1 20342 20342 0.52476 0 1 + 25342 25487 15764 15773 29542 29542 0.09904855127342671 LRNCHAKRRL 10 Unmodified _LRNCHAKRRL_ 0 0 0 L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|46|3|sense L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|46|3|sense L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|46|3|sense MSMS UPN46_class_I_Rep_3 1 633.8714599609375 2 633.86984 1265.72513 NaN NaN NaN NaN NaN NaN NaN 94.44 1 94.44 93.94 94.94 0 0 0 0 0.53105 1 22909 22909 1.6526 0 1 25343 11305 15765 15774 29543 29543 0.10289276619096199 LRNGSSNSTR 10 Unmodified _LRNGSSNSTR_ 0 0 0 REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|57|2|sense REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|57|2|sense MSMS UPN47_class_I_Rep_1 2 546.2796020507812 2 546.281243 1090.54793 NaN NaN NaN NaN NaN NaN NaN 30.365 1 34.11 33.61 34.61 3.7449 0 0 0 0.53105 1 4955 4955 2.4985 0.19575 1 + 25344 25187 15766 15775 29544 29544 0.006280995499309938 LRNIKAFFA 9 Unmodified _LRNIKAFFA_ 0 0 0 REV__L1MB8_dup7082|chr8:38800236-38801901:-|1.4173901825711948|0.0551845027934472|4.68|150.0|23|2|sense REV__L1MB8_dup7082|chr8:38800236-38801901:-|1.4173901825711948|0.0551845027934472|4.68|150.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3213500976562 2 540.321651 1078.62875 -0.0062694 -3.3875E-06 -0.016319 -8.8173E-06 -0.022588 -1.2205E-05 540.3215768191462 25.128 0.25652 25.128 24.916 25.173 0 28 24 2 0 0 0 0.48643 1 3407 3407 2.0598 2.0598 1 219310 + 25345 26430 15767 15776 29545 29545 0.09258032330808419 LRNILFERNRR 11 Unmodified _LRNILFERNRR_ 0 0 0 ENSG00000204311|ENST00000644580|PJVK ENSG00000204311|ENST00000644580|PJVK ENSG00000204311|ENST00000644580|PJVK MSMS UPN46_class_I_Rep_3 1 496.2953186035156 3 496.295297 1485.86406 NaN NaN NaN NaN NaN NaN NaN 71.799 1 71.799 71.299 72.299 0 0 0 0 0.38417 1 16562 16562 0.094841 0 1 25346 5516 15768 15777 29546 29546 0.14056517788253586 LRNPHKSAK 9 Unmodified _LRNPHKSAK_ 0 0 0 L1MD1_dup2041|chr5:69272091-69272862:-|1.112025080690361|0.1493509405947674|2.9|151.0|27|3|sense L1MD1_dup2041|chr5:69272091-69272862:-|1.112025080690361|0.1493509405947674|2.9|151.0|27|3|sense L1MD1_dup2041|chr5:69272091-69272862:-|1.112025080690361|0.1493509405947674|2.9|151.0|27|3|sense MSMS UPN48_class_I_Rep_1 5 526.2448120117188 2 525.811982 1049.60941 NaN NaN NaN NaN NaN NaN NaN 119.55 1 123.16 122.66 123.66 3.6189 0 0 0 0.40098 1 29181 29181 0.45834 0 1 25347 11929 15769 15778 29547 29547 0.08659076039862157 LRNQLQSVY 9 Unmodified _LRNQLQSVY_ 0 0 0 ENSG00000115289|ENST00000233630|PCGF1 ENSG00000115289|ENST00000233630|PCGF1 ENSG00000115289|ENST00000233630|PCGF1 MSMS UPN46_class_I_Rep_3 1 560.8088989257812 2 560.809105 1119.60366 NaN NaN NaN NaN NaN NaN NaN 43.223 1 43.223 42.723 43.723 0 0 0 0 0.25702 1 8613 8613 13.042 2.9685 1 25348 2122 15770 15779 29548 29548 0.04863932737566756 LRNRHNVF 8 Unmodified _LRNRHNVF_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|232|2|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|232|2|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|232|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 528.297607421875 2 528.296499 1054.57845 0.43541 0.00023002 2.4041 0.0012701 2.8395 0.0015001 528.2976661956809 63.681 0.20676 67.139 66.958 67.165 3.4578 19 17 2 0 0 0 0.82752 1 14341 14341 5.2307 0.47466 1 311310 25349 13696 15771 15780 29549 29549 0.0533392272564015 LRNSKTIKF 9 Unmodified _LRNSKTIKF_ 0 0 0 ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 MULTI-MSMS UPN47_class_I_Rep_2 3 553.83740234375 2 553.837665 1105.66078 0.12602 6.9796E-05 -0.21711 -0.00012024 -0.091088 -5.0448E-05 553.8375788238002 43.356 0.98724 46.714 46.238 47.226 3.358 78 62 2 0 0 0 0.47763 1 8827 8827 2.9952 2.9952 1 110880 25350 1370 15772 15781 29550 29550 0.11217400013947554 LRNTVAIIQ 9 Unmodified _LRNTVAIIQ_ 0 0 0 L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|35|2|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|35|2|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|35|2|sense MSMS UPN48_class_I_Rep_2 6 514.3157348632812 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 61.592 1 65.066 64.566 65.566 3.4738 0 0 0 0.37891 1 13695 13695 5.7319 0 1 25351 12660 15773 15782 29551 29551 0.10633424605566688 LRNYIHTV 8 Unmodified _LRNYIHTV_ 0 0 0 REV__MLT2C1_dup2179|chr15:90058646-90059081:-|1.1017291618793306|0.0286315677506976|5.27|150.0|2|1|sense REV__MLT2C1_dup2179|chr15:90058646-90059081:-|1.1017291618793306|0.0286315677506976|5.27|150.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.2879333496094 2 508.287808 1014.56106 0.21117 0.00010734 -0.33525 -0.0001704 -0.12408 -6.3069E-05 508.287571502724 48.431 1.4095 51.955 51.47 52.88 3.5239 239 101 3 0 0 0 0.82752 1 9914 9914 7.9102 0 1 1219100 + 25352 31834 15774 15783 29552 29552 0.05436582399988765 LRPFIWKW 8 Unmodified _LRPFIWKW_ 0 0 0 REV__MLT1F2_dup2569|chr7:76599784-76600323:-|2.102739952695819|0.1627431020498181|3.69|151.0|6|1|sense REV__MLT1F2_dup2569|chr7:76599784-76600323:-|2.102739952695819|0.1627431020498181|3.69|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 573.2803344726562 2 573.334562 1144.65457 NaN NaN NaN NaN NaN NaN NaN 48.631 1 48.631 48.131 49.131 0 0 0 0 0.40746 1 10149 10149 0.69038 0 1 + 25353 31717 15775 15784 29553 29553 0.0880292657307109 LRPGHKIIY 9 Unmodified _LRPGHKIIY_ 0 0 0 REV__nc|ENSG00000188175|A8MVW5-2|HEPACAM2 REV__nc|ENSG00000188175|A8MVW5-2|HEPACAM2 MULTI-MSMS UPN46_class_I_Rep_3 1 548.8348388671875 2 548.834926 1095.6553 0.049021 2.6905E-05 0.091771 5.0367E-05 0.14079 7.7272E-05 548.8348054178053 26.131 0.097965 26.131 26.114 26.212 0 10 4 4 0 0 0 0.48643 1 3697 3697 2.0598 0 1 456370 + 25354 20957 15776 15785 29554 29554 0.11129721222141598 LRPKKLLGFH 10 Unmodified _LRPKKLLGFH_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|24|1|anti-sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|24|1|anti-sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_3 4 604.884765625 2 604.88495 1207.75535 NaN NaN NaN NaN NaN NaN NaN 93.759 1 97.165 96.665 97.665 3.4052 0 0 0 0.53105 1 23360 23360 0.45834 0.057624 1 25355 7705 15777 15786 29555 29555 0.1597795855593631 LRPLDDDSDY 10 Unmodified _LRPLDDDSDY_ 0 0 0 REV__ENSG00000180998|ENST00000321662|GPR137C REV__ENSG00000180998|ENST00000321662|GPR137C MSMS UPN47_class_I_Rep_2 3 604.7744750976562 2 604.775125 1207.5357 NaN NaN NaN NaN NaN NaN NaN 18.132 1 21.522 21.022 22.022 3.3898 0 0 0 0.53105 1 1480 1480 1.6526 0 1 + 25356 20719 15778 15787 29556 29556 -0.05976981703747697 LRPLDDDSDY 10 Unmodified _LRPLDDDSDY_ 0 0 0 REV__ENSG00000180998|ENST00000321662|GPR137C REV__ENSG00000180998|ENST00000321662|GPR137C MSMS UPN48_class_I_Rep_1 5 604.7747192382812 2 604.775125 1207.5357 NaN NaN NaN NaN NaN NaN NaN 18.856 1 22.387 21.887 22.887 3.5313 0 0 0 0.53105 1 1335 1335 1.6526 1.0511 1 + 25357 20719 15778 15787 29557 29557 -0.05976981703747697 LRPQNKSEEI 10 Unmodified _LRPQNKSEEI_ 0 0 0 L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|54|2|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|54|2|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|54|2|sense MSMS UPN47_class_I_Rep_1 2 405.2220458984375 3 405.222693 1212.64625 NaN NaN NaN NaN NaN NaN NaN 48.057 1 51.739 51.239 52.239 3.6819 0 0 0 0.53105 1 10333 10333 1.5923 0 1 25358 9716 15779 15788 29558 29558 0.04843283075138061 LRPRGWALRW 10 Unmodified _LRPRGWALRW_ 0 0 0 nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB nc|ENSG00000188677|Q9HBI1-3|PARVB nc|ENSG00000188677|Q9HBI1-3|PARVB MSMS UPN47_class_I_Rep_1 2 437.5913391113281 3 437.591274 1309.75199 NaN NaN NaN NaN NaN NaN NaN 91.017 1 94.722 94.222 95.222 3.7053 0 0 0 0.53105 1 22726 22726 0.69767 0.07084 1 25359 5245 15780 15789 29559 29559 0.10950708501923145 LRQETGLRL 9 Unmodified _LRQETGLRL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110872962-110874052:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN48_class_I_Rep_2 6 543.3245849609375 2 543.324922 1084.63529 0.46344 0.0002518 -0.44541 -0.000242 0.018035 9.799E-06 543.3245092680344 35.068 0.87145 38.742 38.421 39.292 3.6735 165 84 3 0 0 0 0.43982 1 5810 5810 5.7319 0 1 336680 25360 1963 15781 15790 29560 29560 0.09635925491488706 LRQETGLRL 9 Unmodified _LRQETGLRL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110872962-110874052:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN48_class_I_Rep_3 7 543.324951171875 2 543.324922 1084.63529 0.40992 0.00022272 -0.38835 -0.000211 0.02157 1.1719E-05 543.3245234853083 34.981 0.9281 38.653 38.375 39.303 3.6721 201 100 3 0 0 0 0.43982 1 5699 5699 5.7319 0 1 369270 25361 1963 15781 15790 29561 29561 0.09635925491488706 LRQLFRRSLTL 11 Unmodified _LRQLFRRSLTL_ 0 0 0 L1MC4a_dup1655|chr3:30675696-30676614:-|2.353535543083265|0.2379607220712614|3.31|151.0|59|3|anti-sense L1MC4a_dup1655|chr3:30675696-30676614:-|2.353535543083265|0.2379607220712614|3.31|151.0|59|3|anti-sense L1MC4a_dup1655|chr3:30675696-30676614:-|2.353535543083265|0.2379607220712614|3.31|151.0|59|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 467.6236877441406 3 468.292894 1401.85685 0.016021 7.5026E-06 -0.69353 -0.00032478 -0.67751 -0.00031727 468.292612513006 103.22 0.25531 106.72 106.69 106.94 3.5057 51 38 2 0 0 0 22.551 1 25380 25380 0.50596 0.41111 1 201600 25362 11556 15782 15791 29562 29562 0.17199785187835914 LRQLNIVL 8 Unmodified _LRQLNIVL_ 0 0 0 L1MB7_dup16742|chr13:49031399-49032539:+|1.1469809858633802|0.0885830050167074|3.69|151.0|40|3|sense L1MB7_dup16742|chr13:49031399-49032539:+|1.1469809858633802|0.0885830050167074|3.69|151.0|40|3|sense L1MB7_dup16742|chr13:49031399-49032539:+|1.1469809858633802|0.0885830050167074|3.69|151.0|40|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.8258972167969 2 484.816202 967.617851 0.23677 0.00011479 -0.068249 -3.3088E-05 0.16853 8.1704E-05 484.8160491467087 61.836 1.472 65.096 64.552 66.024 3.2594 178 94 4 0 0 0 0.82752 2 14806 14806;14836 2.3027 0 1 830440 25363 10734 15783 15792 29563;29564 29563 0.13274629956492845 LRQLQLLI 8 Unmodified _LRQLQLLI_ 0 0 0 L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|54|1|anti-sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|54|1|anti-sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.2569580078125 2 498.831852 995.649151 -0.16755 -8.3582E-05 0.68552 0.00034196 0.51797 0.00025838 498.8321768416629 41 0.14062 44.366 44.319 44.46 3.3655 15 13 2 0 0 0 0.82752 1 8212 8212 2.3027 0 1 52898 25364 14748 15784 15793 29565 29565 0.15115202990614307 LRQLRDSV 8 Unmodified _LRQLRDSV_ 0 0 0 REV__ENSG00000165684|ENST00000684778|SNAPC4 REV__ENSG00000165684|ENST00000684778|SNAPC4 MSMS UPN47_class_I_Rep_3 4 493.7901611328125 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 29.211 1 32.534 32.034 33.034 3.3235 0 0 0 0.40643 1 4690 4690 2.0598 0 1 + 25365 20131 15785 15794 29566 29566 0.07351680911654057 LRQNNLPD 8 Unmodified _LRQNNLPD_ 0 0 0 REV__ENSG00000261150|ENST00000615648|EPPK1 REV__ENSG00000261150|ENST00000615648|EPPK1 MSMS UPN46_class_I_Rep_3 1 485.26666259765625 2 485.259248 968.503943 NaN NaN NaN NaN NaN NaN NaN 65.457 1 65.457 64.957 65.957 0 0 0 0 0.40625 1 14794 14794 2.3027 0 1 + 25366 21397 15786 15795 29567 29567 0.01843115123597272 LRQPPIPMW 9 Unmodified _LRQPPIPMW_ 0 0 0 L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|38|3|sense L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|38|3|sense L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|38|3|sense MSMS UPN48_class_I_Rep_1 5 569.31494140625 2 569.315512 1136.61647 NaN NaN NaN NaN NaN NaN NaN 58.991 1 62.472 61.972 62.972 3.4811 0 0 0 0.40038 1 12922 12922 0.6015 0 1 25367 12693 15787 15796 29568 29568 0.05362672596106677 LRQQNYYIY 9 Unmodified _LRQQNYYIY_ 0 0 0 REV__HERVIP10FH-int_dup336|chr17:47065564-47068369:-|4.170574721923585|0.1458003484832421|4.84|151.0|97|3|sense REV__HERVIP10FH-int_dup336|chr17:47065564-47068369:-|4.170574721923585|0.1458003484832421|4.84|151.0|97|3|sense MSMS UPN48_class_I_Rep_3 7 630.822265625 2 630.822212 1259.62987 NaN NaN NaN NaN NaN NaN NaN 52.966 1 56.55 56.05 57.05 3.5836 0 0 0 0.40038 1 10991 10991 0.6015 0 1 + 25368 23770 15788 15797 29569 29569 0.010442019090532995 LRQSPRLWLW 10 Unmodified _LRQSPRLWLW_ 0 0 0 REV__MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|23|1|anti-sense REV__MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|23|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.26312255859375 3 452.262935 1353.76697 0.17101 7.734E-05 0.17189 7.7738E-05 0.3429 0.00015508 452.263024106249 60.151 0.5848 63.625 63.25 63.835 3.4737 73 42 3 0 0 0 0.56463 1 13236 13236 0.56317 0.057215 1 144620 + 25369 31739 15789 15798 29570 29570 0.1042415557926688 LRQSPRLWLW 10 Unmodified _LRQSPRLWLW_ 0 0 0 REV__MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|23|1|anti-sense REV__MLT1G3_dup2328|chr16:75066862-75067450:-|1.1700474700794836|0.0066805315991782|7.45|151.0|23|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.5973205566406 3 452.262935 1353.76697 0.17974 8.129E-05 -0.0043229 -1.9551E-06 0.17542 7.9335E-05 452.262979216617 60.629 0.81577 64.103 63.514 64.33 3.4737 87 59 2 0 0 0 0.56523 1 13430 13430 0.13989 0 1 160540 + 25370 31739 15789 15798 29571 29571 0.1042415557926688 LRQYFEEAF 9 Unmodified _LRQYFEEAF_ 0 0 0 nc|ENSG00000143507|Q9Y6W6-2|DUSP10;ENST00000468085.5_1_1:221875756-221910233:-|nuORF;ENSG00000143507.18,DUSP10,chr1,-,I4.1,221706467,221711636|25|15.53|1|intron;ENSG00000143507|ENST00000366899|DUSP10 nc|ENSG00000143507|Q9Y6W6-2|DUSP10 nc|ENSG00000143507|Q9Y6W6-2|DUSP10 MULTI-MSMS UPN48_class_I_Rep_1 5 601.79638671875 2 601.795663 1201.57677 0.56495 0.00033998 -0.067467 -4.0601E-05 0.49748 0.00029938 601.7955940801658 62.241 1.2039 65.703 65.282 66.486 3.4625 294 90 4 0 0 0 0.24936 2 13809 13809;14047 17.113 0 1 3197300 25371 3305 15790 15799 29572;29573 29572 -0.015951758736491684 LRQYFEEAF 9 Unmodified _LRQYFEEAF_ 0 0 0 nc|ENSG00000143507|Q9Y6W6-2|DUSP10;ENST00000468085.5_1_1:221875756-221910233:-|nuORF;ENSG00000143507.18,DUSP10,chr1,-,I4.1,221706467,221711636|25|15.53|1|intron;ENSG00000143507|ENST00000366899|DUSP10 nc|ENSG00000143507|Q9Y6W6-2|DUSP10 nc|ENSG00000143507|Q9Y6W6-2|DUSP10 MULTI-MSMS UPN48_class_I_Rep_3 7 602.3084716796875 2 601.795663 1201.57677 0.57023 0.00034316 -0.78814 -0.0004743 -0.21791 -0.00013114 601.7957046876501 64.772 0.50808 68.281 68.09 68.598 3.5083 52 39 2 0 0 0 0.39745 1 14551 14551 8.1555 0 1 131810 25372 3305 15790 15799 29574 29574 -0.015951758736491684 LRQYFEEAF 9 Unmodified _LRQYFEEAF_ 0 0 0 nc|ENSG00000143507|Q9Y6W6-2|DUSP10;ENST00000468085.5_1_1:221875756-221910233:-|nuORF;ENSG00000143507.18,DUSP10,chr1,-,I4.1,221706467,221711636|25|15.53|1|intron;ENSG00000143507|ENST00000366899|DUSP10 nc|ENSG00000143507|Q9Y6W6-2|DUSP10 nc|ENSG00000143507|Q9Y6W6-2|DUSP10 MULTI-MATCH UPN48_class_I_Rep_1 5 2 601.795663 1201.57677 0.52053 0.00031325 -0.60751 -0.0003656 -0.086985 -5.2347E-05 601.7956316784187 65.046 0.48344 68.5 68.365 68.848 3.4541 0.10981 0.00010755 NaN 8.1555 44 34 2 NaN NaN NaN NaN 0 NaN NaN 0 140170 25373 3305 15790 15799 -0.015951758736491684 LRRASPGPPR 10 Unmodified _LRRASPGPPR_ 0 0 0 REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF MSMS UPN47_class_I_Rep_2 3 553.8289794921875 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 82.32 1 85.718 85.218 86.218 3.3984 0 0 0 0.53105 1 20519 20519 1.4819 0 1 + 25374 21463 15791 15800 29575 29575 0.09826167305504896 LRRASPGPPR 10 Unmodified _LRRASPGPPR_ 0 0 0 REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 553.8303833007812 2 553.830706 1105.64686 0.51525 0.00028536 -1.1339 -0.00062799 -0.61865 -0.00034263 553.8297959014656 82.256 0.38303 85.832 85.745 86.128 3.5753 60 46 2 0 0 0 0.56333 1 19713 19713 1.4819 0 1 158050 + 25375 21463 15791 15800 29576 29576 0.09826167305504896 LRRDPASVQPP 11 Unmodified _LRRDPASVQPP_ 0 0 0 ENST00000487659.1_1_1:1342042-1342597:-|nuORF ENST00000487659.1_1_1:1342042-1342597:-|nuORF ENST00000487659.1_1_1:1342042-1342597:-|nuORF MSMS UPN48_class_I_Rep_1 5 618.3443603515625 2 618.346386 1234.67822 NaN NaN NaN NaN NaN NaN NaN 45.786 1 49.303 48.803 49.803 3.5162 0 0 0 0.38417 1 8868 8868 0.96228 0.2719 1 25376 7046 15792 15801 29577 29577 0.07026695548938733 LRREARLRR 9 Unmodified _LRREARLRR_ 0 0 0 ENST00000470672.1_1_2:131100637-131102299:+|nuORF;ENST00000464432.5_1_2:131100487-131103076:+|nuORF;ENST00000462392.5_1_2:131100637-131103595:+|nuORF;ENST00000473689.5_1_2:131100487-131103328:+|nuORF;ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF ENST00000470672.1_1_2:131100637-131102299:+|nuORF ENST00000470672.1_1_2:131100637-131102299:+|nuORF MSMS UPN46_class_I_Rep_3 1 613.388671875 2 613.389254 1224.76395 NaN NaN NaN NaN NaN NaN NaN 78.997 1 78.997 78.497 79.497 0 0 0 0 0.39518 1 18534 18534 1.8442 0 1 25377 2984 15793 15802 29578 29578 0.16056325245085645 LRREVYSFG 9 Unmodified _LRREVYSFG_ 0 0 0 nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3;ENST00000595601.1_1_19:17651040-17654446:+|nuORF;nc|ENSG00000167483|Q86XR2-4|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 MULTI-MSMS UPN48_class_I_Rep_1 5 564.3067016601562 2 563.803823 1125.59309 0.47956 0.00027038 -0.0079956 -4.508E-06 0.47156 0.00026587 563.803648333024 35.723 0.5203 39.233 38.91 39.431 3.5101 71 50 2 0 0 0 0.48846 1 5840 5840 1.8442 0 1 116770 25378 4302 15794 15803 29579 29579 0.035319500831292316 LRREVYSFG 9 Unmodified _LRREVYSFG_ 0 0 0 nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3;ENST00000595601.1_1_19:17651040-17654446:+|nuORF;nc|ENSG00000167483|Q86XR2-4|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 MULTI-MSMS UPN48_class_I_Rep_2 6 564.305908203125 2 563.803823 1125.59309 0.46922 0.00026455 -0.15124 -8.5271E-05 0.31798 0.00017928 563.803672608023 35.489 0.62341 39.177 38.857 39.48 3.6877 85 59 2 0 0 0 0.47197 2 5806 5806;5910 3.5965 0 1 108140 25379 4302 15794 15803 29580;29581 29580 0.035319500831292316 LRRFMWSI 8 Unmodified _LRRFMWSI_ 0 0 0 L1MC1_dup719|chr1:183498596-183499700:-|1.0386172473139612|0.0482934705850725|4.43|151.0|65|2|anti-sense L1MC1_dup719|chr1:183498596-183499700:-|1.0386172473139612|0.0482934705850725|4.43|151.0|65|2|anti-sense L1MC1_dup719|chr1:183498596-183499700:-|1.0386172473139612|0.0482934705850725|4.43|151.0|65|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 554.306640625 2 554.807854 1107.60115 0.37512 0.00020812 -1.6317 -0.00090531 -1.2566 -0.00069719 554.806992962947 69.291 0.19646 72.658 72.541 72.737 3.3678 22 15 2 0 0 0 0.72333 1 16762 16762 4.3292 0.38484 1 92147 25380 11189 15795 15804 29582 29582 0.05165805798924339 LRRFPLFY 8 Unmodified _LRRFPLFY_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.3236694335938 2 556.324194 1110.63383 0.43342 0.00024112 -1.5394 -0.00085639 -1.1059 -0.00061527 556.3232825436212 79.602 0.25571 83.067 82.911 83.167 3.465 39 27 2 0 0 0 0.82752 3 19853 19820;19845;19853 19.439 4.6007 1 70007 + 25381 25429 15796 15805 29583;29584;29585 29585 0.08294336193398522 LRRFPLFY 8 Unmodified _LRRFPLFY_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense MSMS UPN47_class_I_Rep_1 2 556.323486328125 2 556.324194 1110.63383 NaN NaN NaN NaN NaN NaN NaN 79.8 1 83.265 82.765 83.765 3.465 0 0 0 0.36148 1 19893 19893 19.439 0 1 + 25382 25429 15796 15805 29586 29586 0.08294336193398522 LRRFPLFY 8 Unmodified _LRRFPLFY_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.3237915039062 2 556.324194 1110.63383 0.49789 0.00027699 -1.1025 -0.00061336 -0.60462 -0.00033637 556.3233588053947 79.65 0.20326 83.006 82.876 83.079 3.3554 39 23 3 0 0 0 0.82752 2 19815 19815;19852 19.439 4.6007 1 100870 + 25383 25429 15796 15805 29587;29588 29587 0.08294336193398522 LRRFPLFY 8 Unmodified _LRRFPLFY_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense MSMS UPN47_class_I_Rep_2 3 556.3231811523438 2 556.324194 1110.63383 NaN NaN NaN NaN NaN NaN NaN 79.834 1 83.204 82.704 83.704 3.3694 0 0 0 0.36705 1 19886 19886 18.135 8.0611 1 + 25384 25429 15796 15805 29589 29589 0.08294336193398522 LRRFPLFY 8 Unmodified _LRRFPLFY_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense MSMS UPN47_class_I_Rep_2 3 556.3240966796875 2 556.324194 1110.63383 NaN NaN NaN NaN NaN NaN NaN 79.969 1 83.339 82.839 83.839 3.3694 0 0 0 0.38547 1 19924 19924 13.508 3.434 1 + 25385 25429 15796 15805 29590 29590 0.08294336193398522 LRRFPLFY 8 Unmodified _LRRFPLFY_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|86|3|anti-sense MSMS UPN47_class_I_Rep_2 3 556.32373046875 2 556.324194 1110.63383 NaN NaN NaN NaN NaN NaN NaN 80.248 1 83.617 83.117 84.117 3.3694 0 0 0 0.40404 1 19987 19987 5.2307 0 1 + 25386 25429 15796 15805 29591 29591 0.08294336193398522 LRRFSQYML 9 Unmodified _LRRFSQYML_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS UPN48_class_I_Rep_2 6 607.331298828125 2 607.32915 1212.64375 0.38898 0.00023624 0.76377 0.00046386 1.1527 0.0007001 607.329647138768 47.576 1.1091 51.312 50.868 51.977 3.7361 145 91 2 0 0 0 0.4823 1 9331 9331 1.8442 0.19162 1 477620 25387 5382 15797 15806 29592 29592 0.045931561364795925 LRRFWLRRWGF 11 Unmodified _LRRFWLRRWGF_ 0 0 0 L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|204|1|anti-sense L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|204|1|anti-sense L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|204|1|anti-sense MSMS UPN46_class_I_Rep_3 1 531.64111328125 3 531.640628 1591.90005 NaN NaN NaN NaN NaN NaN NaN 47.383 1 47.383 46.883 47.883 0 0 0 0 0.38417 1 9793 9793 0.094841 0 1 25388 14613 15798 15807 29593 29593 0.12778019755728565 LRRGSGILA 9 Unmodified _LRRGSGILA_ 0 0 0 nc|ENSG00000174151|Q8N8Q1-4|CYB561D1;nc|ENSG00000174151|Q8N8Q1-2|CYB561D1;ENSG00000174151|ENST00000420578|CYB561D1;nc|ENSG00000174151|Q8N8Q1-3|CYB561D1 nc|ENSG00000174151|Q8N8Q1-4|CYB561D1 nc|ENSG00000174151|Q8N8Q1-4|CYB561D1 MSMS UPN47_class_I_Rep_3 4 471.7951965332031 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.076 1 91.464 90.964 91.964 3.3873 0 0 0 0.38299 1 22085 22085 4.756 0 1 25389 4666 15799 15808 29594 29594 0.1039228863688777 LRRGVPARRW 10 Unmodified _LRRGVPARRW_ 0 0 0 REV__ENST00000316999.9_1_6:71377649-71377766:+|nuORF REV__ENST00000316999.9_1_6:71377649-71377766:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 422.59259033203125 3 422.926657 1265.75814 0.063634 2.6912E-05 0.29935 0.0001266 0.36299 0.00015352 422.926847098122 50.767 0.36897 54.435 54.207 54.575 3.6679 28 19 2 0 0 0 0.84575 1 10359 10359 1.7423 0 1 232210 + 25390 21716 15800 15809 29595 29595 0.1358922673343841 LRRGVPARRW 10 Unmodified _LRRGVPARRW_ 0 0 0 REV__ENST00000316999.9_1_6:71377649-71377766:+|nuORF REV__ENST00000316999.9_1_6:71377649-71377766:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 422.926657 1265.75814 0.0011484 4.8571E-07 0.67173 0.00028409 0.67287 0.00028458 422.9269016326469 50.491 1.0058 54.112 53.688 54.694 3.621 -0.16131 0.00013075 NaN 1.7423 97 61 2 NaN NaN NaN NaN 0 NaN NaN 0 234670 + 25391 21716 15800 15809 0.1358922673343841 LRRKITTY 8 Unmodified _LRRKITTY_ 0 0 0 ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF ENSG00000124422|ENST00000261497|USP22 ENSG00000124422|ENST00000261497|USP22 MSMS UPN46_class_I_Rep_3 1 525.8602294921875 2 525.824558 1049.63456 NaN NaN NaN NaN NaN NaN NaN 55.872 1 55.872 55.372 56.372 0 0 0 0 0.40604 1 12160 12160 2.5775 0.51773 1 25392 2465 15801 15810 29596 29596 0.11173130842439605 LRRKRNERRHK 11 Unmodified _LRRKRNERRHK_ 0 0 0 L1MC1_dup9225|chr11:68486629-68487270:-|2.154328847796263|0.0124309610580823|7.44|151.0|25|3|sense L1MC1_dup9225|chr11:68486629-68487270:-|2.154328847796263|0.0124309610580823|7.44|151.0|25|3|sense L1MC1_dup9225|chr11:68486629-68487270:-|2.154328847796263|0.0124309610580823|7.44|151.0|25|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 516.7359008789062 3 516.985457 1547.93454 0.3113 0.00016094 -0.81191 -0.00041974 -0.50061 -0.00025881 517.3194269496897 50.087 0.084152 53.781 53.723 53.807 3.6946 10 6 2 0 0 0 22.551 1 10192 10192 0.094841 0 1 193480 25393 11213 15802 15811 29597 29597 0.18249235896564642 LRRKRNERRHK 11 Unmodified _LRRKRNERRHK_ 0 0 0 L1MC1_dup9225|chr11:68486629-68487270:-|2.154328847796263|0.0124309610580823|7.44|151.0|25|3|sense L1MC1_dup9225|chr11:68486629-68487270:-|2.154328847796263|0.0124309610580823|7.44|151.0|25|3|sense L1MC1_dup9225|chr11:68486629-68487270:-|2.154328847796263|0.0124309610580823|7.44|151.0|25|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 516.7354125976562 3 516.985457 1547.93454 0.2414 0.0001248 -0.063858 -3.3014E-05 0.17754 9.1786E-05 516.9852499750277 50.905 1.325 54.516 53.713 55.038 3.6105 191 85 3 0 0 0 22.551 1 10130 10130 0.094841 0 1 562850 25394 11213 15802 15811 29598 29598 0.18249235896564642 LRRKRRFV 8 Unmodified _LRRKRRFV_ 0 0 0 REV__nc|ENSG00000100490|Q00532-2|CDKL1 REV__nc|ENSG00000100490|Q00532-2|CDKL1 MULTI-MSMS UPN46_class_I_Rep_3 1 566.3740234375 2 565.872708 1129.73086 -0.14746 -8.3441E-05 -0.10193 -5.7682E-05 -0.24939 -0.00014112 566.3740566456045 12.98 0.099091 12.98 12.928 13.027 0 10 6 2 0 0 0 0.82752 1 267 267 0.69038 0 1 19124 + 25395 31950 15803 15812 29599 29599 0.17118743193054797 LRRLVLRKAI 10 Unmodified _LRRLVLRKAI_ 0 0 0 REV__ENST00000489124.5_1_6:30312945-30314275:+|nuORF REV__ENST00000489124.5_1_6:30312945-30314275:+|nuORF MSMS UPN46_class_I_Rep_3 1 619.4340209960938 2 619.432599 1236.85064 NaN NaN NaN NaN NaN NaN NaN 65.173 1 65.173 64.673 65.673 0 0 0 0 0.53105 1 14719 14719 0.40072 0 1 + 25396 22616 15804 15813 29600 29600 0.24169311746982203 LRRMYIPLIWS 11 Unmodified _LRRMYIPLIWS_ 0 0 0 L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|143|3|anti-sense L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|143|3|anti-sense L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|143|3|anti-sense MSMS UPN48_class_I_Rep_3 7 483.2796936035156 3 483.279597 1446.81696 NaN NaN NaN NaN NaN NaN NaN 114.68 1 118.33 117.83 118.83 3.6511 0 0 0 0.38417 1 27274 27274 0.094841 0 1 25397 14683 15805 15814 29601 29601 0.11142522192926663 LRRNLMRRL 9 Unmodified _LRRNLMRRL_ 0 0 0 REV__ENST00000383794.6_1_3:14697081-14697126:+|nuORF REV__ENST00000383794.6_1_3:14697081-14697126:+|nuORF MSMS UPN46_class_I_Rep_3 1 614.3716430664062 2 614.382583 1226.75061 NaN NaN NaN NaN NaN NaN NaN 90.479 1 90.479 89.979 90.979 0 0 0 0 0.39518 1 21821 21821 1.8442 0 1 + 25398 22071 15806 15815 29602 29602 0.14630751141498877 LRRNSLTA 8 Unmodified _LRRNSLTA_ 0 0 0 ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS MULTI-MSMS UPN48_class_I_Rep_3 7 465.7778015136719 2 465.777608 929.540663 0.24727 0.00011518 -0.64352 -0.00029974 -0.39624 -0.00018456 465.7772098305443 73.009 0.58082 76.546 76.136 76.717 3.5373 65 47 2 0 0 0 0.82752 1 16936 16936 0.69038 0 1 227570 25399 4658 15807 15816 29603 29603 0.07307411740157477 LRRPWEMCS 9 Unmodified _LRRPWEMCS_ 0 0 0 L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|383|3|anti-sense L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|383|3|anti-sense L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|383|3|anti-sense MSMS UPN48_class_I_Rep_2 6 589.2841186523438 2 589.283886 1176.55322 NaN NaN NaN NaN NaN NaN NaN 28.252 1 31.883 31.383 32.383 3.6311 0 0 0 0.4007 1 3866 3866 0.52476 0 1 25400 14718 15808 15817 29604 29604 -0.027996361834311756 LRRQLLFY 8 Unmodified _LRRQLLFY_ 0 0 0 REV__ENST00000465651.1_1_1:205561218-205568281:+|nuORF REV__ENST00000465651.1_1_1:205561218-205568281:+|nuORF MSMS UPN47_class_I_Rep_3 4 554.3663330078125 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 86.598 1 89.978 89.478 90.478 3.3801 0 0 0 0.40581 1 21704 21704 2.8892 0.58649 1 + 25401 22470 15809 15818 29605 29605 0.10577721222125547 LRRQNVPHRFI 11 Unmodified _LRRQNVPHRFI_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MSMS UPN46_class_I_Rep_3 1 479.2626037597656 3 479.284621 1434.83203 NaN NaN NaN NaN NaN NaN NaN 49.789 1 49.789 49.289 50.289 0 0 0 0 0.38417 1 10477 10477 1.2148 0 1 25402 16624 15810 15819 29606 29606 0.13201150105101078 LRRRCRRF 8 Unmodified _LRRRCRRF_ 0 0 0 REV__ENSG00000223510|ENST00000420162|CDRT15 REV__ENSG00000223510|ENST00000420162|CDRT15 MSMS UPN48_class_I_Rep_1 5 581.8439331054688 2 581.846168 1161.67778 NaN NaN NaN NaN NaN NaN NaN 89.881 1 93.507 93.007 94.007 3.6255 0 0 0 0.40746 1 21599 21599 0.69038 0.088878 1 + 25403 21284 15811 15820 29607 29607 0.1034104213874798 LRRRDPPRRLV 11 Unmodified _LRRRDPPRRLV_ 0 0 0 ENST00000461408.2_1_15:59040902-59041232:-|nuORF ENST00000461408.2_1_15:59040902-59041232:-|nuORF ENST00000461408.2_1_15:59040902-59041232:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.6372375488281 3 478.635654 1432.88513 0.24633 0.0001179 4.3075 0.0020617 4.5539 0.0021796 478.63672586693457 64.451 0.047401 67.959 67.918 67.966 3.5083 6 3 2 0 0 0 0.68132 1 14489 14489 0.40827 0.2854 1 124030 25404 6860 15812 15821 29608 29608 0.18600527887770113 LRRRLLPRLR 10 Unmodified _LRRRLLPRLR_ 0 0 0 REV__ENST00000453168.5_1_3:31574222-31574351:+|nuORF REV__ENST00000453168.5_1_3:31574222-31574351:+|nuORF MSMS UPN48_class_I_Rep_1 5 450.6421203613281 3 450.30899 1347.90514 NaN NaN NaN NaN NaN NaN NaN 44.156 1 47.669 47.169 48.169 3.5132 0 0 0 0.53105 1 8371 8371 0.13989 0 1 + 25405 22395 15813 15822 29609 29609 0.24510323618369512 LRRRRRRKWRE 11 Unmodified _LRRRRRRKWRE_ 0 0 0 REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF MSMS UPN48_class_I_Rep_3 7 556.2335205078125 3 556.680368 1667.01927 NaN NaN NaN NaN NaN NaN NaN 22.057 1 25.771 25.271 26.271 3.7144 0 0 0 0.38417 1 2190 2190 0 0 1 + 25406 21763 15814 15823 29610 29610 0.2124460643317434 LRRRRRRM 8 Unmodified _LRRRRRRM_ 0 0 0 REV__ENST00000605946.1_1_10:31608461-31608611:-|nuORF REV__ENST00000605946.1_1_10:31608461-31608611:-|nuORF MSMS UPN47_class_I_Rep_1 2 600.3759155273438 2 600.378166 1198.74178 NaN NaN NaN NaN NaN NaN NaN 86.019 1 89.634 89.134 90.134 3.6153 0 0 0 0.40746 1 21482 21482 0.69038 0 1 + 25407 23228 15815 15824 29611 29611 0.15035822295703838 LRRRRRRM 8 Unmodified _LRRRRRRM_ 0 0 0 REV__ENST00000605946.1_1_10:31608461-31608611:-|nuORF REV__ENST00000605946.1_1_10:31608461-31608611:-|nuORF MSMS UPN47_class_I_Rep_3 4 600.376708984375 2 600.378166 1198.74178 NaN NaN NaN NaN NaN NaN NaN 88.117 1 91.505 91.005 92.005 3.3873 0 0 0 0.40746 1 22097 22097 0.69038 0 1 + 25408 23228 15815 15824 29612 29612 0.15035822295703838 LRRRRRRRRRR 11 Unmodified _LRRRRRRRRRR_ 0 0 0 ENST00000373930.3_1_9:123476433-123476640:-|nuORF;ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF MSMS UPN48_class_I_Rep_1 5 565.0418701171875 3 565.042523 1692.10574 NaN NaN NaN NaN NaN NaN NaN 38.014 1 41.52 41.02 42.02 3.5052 0 0 0 0.38417 1 6531 6531 0 0 1 25409 6423 15816 15825 29613 29613 0.2873703077839309 LRRRTRRMRRR 11 Unmodified _LRRRTRRMRRR_ 0 0 0 REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 538.1611938476562 3 538.337836 1611.99168 -0.0045931 -2.4726E-06 -1.929 -0.0010385 -1.9336 -0.0010409 538.3369440259604 12.838 0.18611 16.226 16.164 16.35 3.388 30 20 2 0 0 0 22.551 1 178 178 0 0 1 40637 + 25410 22247 15817 15826 29614 29614 0.21016379901288929 LRRRTRRMRRR 11 Unmodified _LRRRTRRMRRR_ 0 0 0 REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 538.1614379882812 3 538.337836 1611.99168 -0.46282 -0.00024915 -2.1144 -0.0011383 -2.5772 -0.0013874 538.6710218948058 12.867 0.20714 16.24 16.184 16.391 3.3734 33 22 2 0 0 0 22.551 1 173 173 0 0 1 33313 + 25411 22247 15817 15826 29615 29615 0.21016379901288929 LRRRTRRMRRR 11 Unmodified _LRRRTRRMRRR_ 0 0 0 REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 538.337836 1611.99168 -0.11832 -6.3693E-05 -2.1866 -0.0011771 -2.3049 -0.0012408 538.3367022340386 12.808 0.26945 16.258 16.19 16.459 3.45 0.016335 -0.00011529 NaN 0 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 69216 + 25412 22247 15817 15826 0.21016379901288929 LRRRTWKL 8 Unmodified _LRRRTWKL_ 0 0 0 ENST00000510548.6_1_4:89198357-89199775:-|nuORF;ENST00000506423.1_1_4:89198354-89199383:-|nuORF ENST00000510548.6_1_4:89198357-89199775:-|nuORF ENST00000510548.6_1_4:89198357-89199775:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.8606567382812 2 564.859267 1127.70398 NaN NaN NaN NaN NaN NaN NaN 79.498 1 83.046 82.546 83.546 3.5487 0 0 0 0.40753 1 18980 18980 0.6015 0.076735 1 25413 7159 15818 15827 29616 29616 0.14523634581883016 LRRSDKEIFK 10 Unmodified _LRRSDKEIFK_ 0 0 0 REV__L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|15|3|sense REV__L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|15|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 646.3779296875 2 646.377686 1290.74082 0.65109 0.00042085 -0.56823 -0.00036729 0.082859 5.3558E-05 646.377495985643 94.691 0.83511 98.592 98.343 99.179 3.9016 213 110 3 0 0 0 0.55724 1 22487 22487 4.5289 0.33936 1 291280 + 25414 25838 15819 15828 29617 29617 0.10707841617113445 LRRTALVI 8 Unmodified _LRRTALVI_ 0 0 0 REV__AluJr_dup9047|chr2:70219504-70219651:-|2.013557214343165|0.29777243561721|2.76|151.0|3|2|sense REV__AluJr_dup9047|chr2:70219504-70219651:-|2.013557214343165|0.29777243561721|2.76|151.0|3|2|sense MSMS UPN46_class_I_Rep_3 1 471.0097351074219 2 471.316369 940.618185 NaN NaN NaN NaN NaN NaN NaN 95.503 1 95.503 95.003 96.003 0 0 0 0 0.40746 1 23190 23190 0.69038 0 1 + 25415 17068 15820 15829 29618 29618 0.1455004967633613 LRRVLDTA 8 Unmodified _LRRVLDTA_ 0 0 0 nc|ENSG00000102901|Q96BT3-3|CENPT;ENST00000564128.1_1_16:67866129-67867804:-|nuORF;ENST00000436104.6_1_16:67865250-67867798:-|nuORF;ENST00000569862.5_1_16:67865986-67867804:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENSG00000102901|ENST00000562787|CENPT nc|ENSG00000102901|Q96BT3-3|CENPT nc|ENSG00000102901|Q96BT3-3|CENPT MULTI-MSMS UPN48_class_I_Rep_1 5 472.28765869140625 2 472.287808 942.561064 0.097334 4.597E-05 -0.28339 -0.00013384 -0.18605 -8.787E-05 472.2877073794189 87.365 0.14881 90.984 90.929 91.078 3.6187 27 17 2 0 0 0 0.82752 1 20936 20936 0.69038 0 1 98292 25416 1631 15821 15830 29619 29619 0.08748582399971383 LRRWHKSRLLQ 11 Unmodified _LRRWHKSRLLQ_ 0 0 0 nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000253159|O60330-2|PCDHGA12;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-SECPEP UPN47_class_I_Rep_1 2 498.33990478515625 3 498.303904 1491.88988 0.28988 0.00014445 3.0954 0.0015425 3.3853 0.0016869 498.3058505828082 108.35 0.089828 111.98 111.95 112.04 3.6355 11 9 2 0 0 0 22.551 1 26622 26622 0.50596 0.051438 1 888530 25417 5547;5747;5753 15822 15831 29620 29620 0.16361412030551037 LRRWVAGPRR 10 Unmodified _LRRWVAGPRR_ 0 0 0 SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 422.59228515625 3 422.926657 1265.75814 0.19748 8.3521E-05 0.095936 4.0574E-05 0.29342 0.00012409 422.92680843757097 54.84 0.96294 58.422 58.113 59.076 3.5817 98 58 2 0 0 0 0.84575 1 11705 11705 1.7423 1.7423 1 194600 25418 32848 15823 15832 29621 29621 0.1358922673343841 LRRWVAGPRR 10 Unmodified _LRRWVAGPRR_ 0 0 0 SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 422.5922546386719 3 422.926657 1265.75814 0.19495 8.2447E-05 0.32483 0.00013738 0.51978 0.00021983 422.9266979406642 56.5 0.19351 60.034 59.94 60.133 3.5333 23 16 2 0 0 0 0.84575 1 12147 12147 1.7423 0 1 164060 25419 32848 15823 15832 29622 29622 0.1358922673343841 LRRWVAGPRR 10 Unmodified _LRRWVAGPRR_ 0 0 0 SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 422.926657 1265.75814 0.023496 9.9371E-06 -2.316 -0.00097949 -2.2925 -0.00096955 423.25918050850555 58.143 0.099838 58.143 58.082 58.181 0 -0.13913 -0.0030332 NaN 1.7423 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 111970 25420 32848 15823 15832 0.1358922673343841 LRRWVAGPRR 10 Unmodified _LRRWVAGPRR_ 0 0 0 SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense SVA_C_dup281|chr10:45864810-45866421:-|2.7680680103237862|0.27570145408575|3.33|151.0|55|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.926657 1265.75814 -0.4557 -0.00019273 0.4328 0.00018304 -0.022897 -9.6836E-06 422.9269323141283 56.648 0.080677 59.948 59.904 59.984 3.3009 -0.042712 0.00011345 NaN 1.7423 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 101010 25421 32848 15823 15832 0.1358922673343841 LRRYLKKKK 9 Unmodified _LRRYLKKKK_ 0 0 0 L1MD3_dup4171|chr15:55875618-55876805:+|1.1975968689585268|0.0389969155842226|4.94|151.0|49|1|anti-sense L1MD3_dup4171|chr15:55875618-55876805:+|1.1975968689585268|0.0389969155842226|4.94|151.0|49|1|anti-sense L1MD3_dup4171|chr15:55875618-55876805:+|1.1975968689585268|0.0389969155842226|4.94|151.0|49|1|anti-sense MSMS UPN48_class_I_Rep_3 7 616.9190673828125 2 616.919324 1231.8241 NaN NaN NaN NaN NaN NaN NaN 29.679 1 33.407 32.907 33.907 3.7286 0 0 0 0.4029 1 4191 4191 0 0 1 25422 12074 15824 15833 29623 29623 0.21745622855610236 LRRYPKMWKRL 11 Unmodified _LRRYPKMWKRL_ 0 0 0 THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.31005859375 3 516.30989 1545.90784 0.34674 0.00017902 0.2202 0.00011369 0.56693 0.00029271 516.3097798212029 97.052 0.37028 100.83 100.66 101.04 3.7804 85 49 3 0 0 0 0.68478 1 23071 23071 0.094841 0.011491 1 185830 25423 32931 15825 15834 29624 29624 0.15672410960996785 LRSHVHHYL 9 Unmodified _LRSHVHHYL_ 0 0 0 REV__ENST00000477136.5_1_2:27278334-27279673:+|nuORF REV__ENST00000477136.5_1_2:27278334-27279673:+|nuORF MSMS UPN48_class_I_Rep_3 7 581.31640625 2 581.317432 1160.62031 NaN NaN NaN NaN NaN NaN NaN 49.369 1 52.998 52.498 53.498 3.6291 0 0 0 0.38478 1 9903 9903 4.3292 0.38484 1 + 25424 17946 15826 15835 29625 29625 0.046424784141890996 LRSIPLAVKH 10 Unmodified _LRSIPLAVKH_ 0 0 0 REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|154|3|sense REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|154|3|sense MSMS UPN48_class_I_Rep_3 7 567.3641357421875 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 46.971 1 50.607 50.107 51.107 3.6363 0 0 0 0.53105 1 9169 9169 2.7352 0.67545 1 + 25425 23910 15827 15836 29626 29626 0.14701679284939928 LRSKHWWV 8 Unmodified _LRSKHWWV_ 0 0 0 REV__AluSz6_dup30281|chr11:85994736-85995003:-|1.8766308585100704|0.1153846452970331|4.02|151.0|10|1|anti-sense REV__AluSz6_dup30281|chr11:85994736-85995003:-|1.8766308585100704|0.1153846452970331|4.02|151.0|10|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 555.7866821289062 2 556.311618 1110.60868 0.41211 0.00022926 -1.0568 -0.0005879 -0.64468 -0.00035864 556.3109822626813 62.408 0.055931 65.919 65.874 65.93 3.5104 7 5 2 0 0 0 0.72333 1 13863 13863 0.79363 0 1 45551 + 25426 17230 15828 15837 29627 29627 0.05780281390821074 LRSLKANQPQL 11 Unmodified _LRSLKANQPQL_ 0 0 0 ENST00000527416.2_1_14:95555309-95557645:-|nuORF ENST00000527416.2_1_14:95555309-95557645:-|nuORF ENST00000527416.2_1_14:95555309-95557645:-|nuORF MSMS UPN48_class_I_Rep_3 7 634.3782348632812 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 103.32 1 107.06 106.56 107.56 3.7434 0 0 0 0.38417 1 24403 24403 5.2969 0.39987 1 25427 7271 15829 15838 29628 29628 0.11811841617122809 LRSLRRKRRRW 11 Unmodified _LRSLRRKRRRW_ 0 0 0 Tigger2_dup1316|chr7:101827607-101827970:-|1.0887672735844294|0.0135885015960495|6.32|150.0|24|3|anti-sense Tigger2_dup1316|chr7:101827607-101827970:-|1.0887672735844294|0.0135885015960495|6.32|150.0|24|3|anti-sense Tigger2_dup1316|chr7:101827607-101827970:-|1.0887672735844294|0.0135885015960495|6.32|150.0|24|3|anti-sense MSMS UPN47_class_I_Rep_3 4 528.3385620117188 3 528.337831 1581.99166 NaN NaN NaN NaN NaN NaN NaN 111.71 1 115.23 114.73 115.73 3.5207 0 0 0 0.38417 1 27430 27430 0 0 1 25428 33282 15830 15839 29629 29629 0.2239470317292671 LRSRGRDNS 9 Unmodified _LRSRGRDNS_ 0 0 0 ENST00000307839.9_1_3:23958190-23958547:+|nuORF ENST00000307839.9_1_3:23958190-23958547:+|nuORF ENST00000307839.9_1_3:23958190-23958547:+|nuORF MSMS UPN48_class_I_Rep_2 6 530.7831420898438 2 530.783953 1059.55335 NaN NaN NaN NaN NaN NaN NaN 117.87 1 121.53 121.03 122.03 3.6627 0 0 0 0.39518 1 28254 28254 1.8442 0.36234 1 25429 6099 15831 15840 29630 29630 0.02595823132401165 LRSSRPVK 8 Unmodified _LRSSRPVK_ 0 0 0 REV__ENST00000558590.1_1_14:103395319-103397951:+|nuORF REV__ENST00000558590.1_1_14:103395319-103397951:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.432 1 64.691 64.191 65.191 3.2594 0 0 0 0.40527 1 14441 14441 3.5965 1.5367 1 + 25430 20153 15832 15841 29631 29631 0.10392288636899139 LRSVYSYLL 9 Unmodified _LRSVYSYLL_ 0 0 0 L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|223|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|223|2|anti-sense L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|223|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.821044921875 2 557.318774 1112.623 0.37508 0.00020904 -0.034961 -1.9484E-05 0.34012 0.00018956 557.3186267574554 65.115 0.59547 68.471 68.405 69.001 3.3557 59 34 2 0 0 0 0.38714 1 15575 15575 8.7454 2.0222 1 123320 25431 14845 15833 15842 29632 29632 0.07118889028470221 LRSWKIARR 9 Unmodified _LRSWKIARR_ 0 0 0 REV__ENST00000476439.1_1_13:114014543-114018409:-|nuORF REV__ENST00000476439.1_1_13:114014543-114018409:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 593.3696899414062 2 593.369998 1184.72544 0.41125 0.00024403 -0.24787 -0.00014708 0.16339 9.6949E-05 593.369648633081 107.88 0.38191 111.51 111.43 111.81 3.6313 94 33 4 0 0 0 0.37599 1 26109 26109 9.3831 2.2814 1 21831000 + 25432 19321 15834 15843 29633 29633 0.14047019610575262 LRTELTLK 8 Unmodified _LRTELTLK_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|92|2|sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|92|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.3059387207031 2 487.305667 972.596781 0.17511 8.5333E-05 -0.40601 -0.00019785 -0.2309 -0.00011252 487.3052535375679 38.699 0.68318 42.204 41.819 42.502 3.5048 73 58 2 0 0 0 0.82752 1 6742 6742 10.074 1.3285 1 116500 + 25433 23723 15835 15844 29634 29634 0.10938619856983678 LRTELVLKS 9 Unmodified _LRTELVLKS_ 0 0 0 REV__HERVIP10F-int_dup214|chr15:34155232-34159369:-|3.730186243385989|0.0946228886065392|5.3|151.0|23|1|sense REV__HERVIP10F-int_dup214|chr15:34155232-34159369:-|3.730186243385989|0.0946228886065392|5.3|151.0|23|1|sense MSMS UPN46_class_I_Rep_3 1 529.8314819335938 2 529.832049 1057.64954 NaN NaN NaN NaN NaN NaN NaN 97.736 1 97.736 97.236 98.236 0 0 0 0 0.40098 1 23790 23790 0.45834 0 1 + 25434 23753 15836 15845 29635 29635 0.12302577919786017 LRTHLQIRNG 10 Unmodified _LRTHLQIRNG_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|17|1|anti-sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|17|1|anti-sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_2 3 604.30126953125 2 604.354545 1206.69454 NaN NaN NaN NaN NaN NaN NaN 58.252 1 61.534 61.034 62.034 3.2818 0 0 0 0.53105 1 13471 13471 1.4819 0 1 25435 15511 15837 15846 29636 29636 0.09945821505698405 LRTIFHAAS 9 Unmodified _LRTIFHAAS_ 0 0 0 REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 508.2878723144531 2 508.287808 1014.56106 0.18246 9.2744E-05 -0.28782 -0.00014629 -0.10536 -5.3551E-05 508.2876369189592 48.884 0.5855 52.513 52.309 52.894 3.6291 94 45 3 0 0 0 0.37599 1 9758 9758 9.3831 0 1 303910 + 25436 21275 15838 15847 29637 29637 0.054365823999773966 LRTLHTQF 8 Unmodified _LRTLHTQF_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|44|2|sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.2873229980469 2 508.287808 1014.56106 0.21117 0.00010734 -0.33525 -0.0001704 -0.12408 -6.3069E-05 508.287571502724 48.431 1.4095 51.955 51.47 52.88 3.5239 239 101 3 0 0 0 0.82752 2 9863 9863;9890 9.3831 1.2276 1 1219100 + 25437 24886 15839 15848 29638;29639 29638 0.05436582399988765 LRTLHTQF 8 Unmodified _LRTLHTQF_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|44|2|sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.2878723144531 2 508.287808 1014.56106 0.18246 9.2744E-05 -0.28782 -0.00014629 -0.10536 -5.3551E-05 508.2876369189592 48.884 0.5855 52.513 52.309 52.894 3.6291 94 45 3 0 0 0 0.82752 2 9765 9765;9807 9.3831 2.0939 1 303910 + 25438 24886 15839 15848 29640;29641 29640 0.05436582399988765 LRTLRLHLILW 11 Unmodified _LRTLRLHLILW_ 0 0 0 HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|181|1|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|181|1|anti-sense HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|181|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 478.77813720703125 3 478.641634 1432.90307 0.22771 0.00010899 3.7926 0.0018153 4.0203 0.0019243 478.64320927454395 46.198 0.027416 46.198 46.183 46.21 0 4 2 2 0 0 0 22.551 1 9452 9452 0.094841 0 1 75033 25439 8251 15840 15849 29642 29642 0.2039385008993122 LRTRAGMSAK 10 Unmodified _LRTRAGMSAK_ 0 0 0 ENST00000533871.6_2_11:133807790-133814210:-|nuORF ENST00000533871.6_2_11:133807790-133814210:-|nuORF ENST00000533871.6_2_11:133807790-133814210:-|nuORF MSMS UPN47_class_I_Rep_2 3 545.8104858398438 2 545.811125 1089.6077 NaN NaN NaN NaN NaN NaN NaN 85.231 1 88.655 88.155 89.155 3.4244 0 0 0 0.53105 1 21210 21210 4.897 0 1 25440 7315 15841 15850 29643 29643 0.06647698959636728 LRTRRVWP 8 Unmodified _LRTRRVWP_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MSMS UPN48_class_I_Rep_1 5 542.3299560546875 2 542.330342 1082.64613 NaN NaN NaN NaN NaN NaN NaN 85.951 1 89.563 89.063 90.063 3.6111 0 0 0 0.40738 1 20579 20579 0.79363 0.10326 1 + 25441 21560 15842 15851 29644 29644 0.10811372656439744 LRTTWGTVL 9 Unmodified _LRTTWGTVL_ 0 0 0 REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense REV__MER54B_dup5|chr1:50730574-50731346:+|1.1387511316339372|0.02280622485355|5.64|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.8031616210938 2 523.803291 1045.59203 0.44339 0.00023225 -0.61925 -0.00032437 -0.17586 -9.2115E-05 523.8029460897977 63.235 0.84325 66.744 66.299 67.142 3.5091 140 66 3 0 0 0 0.13244 3 14075 14075;14109;14113 27.629 4.4241 1 585850 + 25442 31439 15843 15852 29645;29646;29647 29645 0.07105735714230832 LRTVMLIP 8 Unmodified _LRTVMLIP_ 0 0 0 ENSG00000107949|ENST00000278100|BCCIP ENSG00000107949|ENST00000278100|BCCIP ENSG00000107949|ENST00000278100|BCCIP MSMS UPN47_class_I_Rep_2 3 471.7954406738281 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 31.536 1 35.005 34.505 35.505 3.4691 0 0 0 0.40625 1 5350 5350 2.3027 0 1 25443 1846 15844 15853 29648 29648 0.10008482818830089 LRTVPELIR 9 Unmodified _LRTVPELIR_ 0 0 0 ENSG00000179477|ENST00000647874|ALOX12B ENSG00000179477|ENST00000647874|ALOX12B ENSG00000179477|ENST00000647874|ALOX12B MULTI-MSMS UPN48_class_I_Rep_1 5 548.8456420898438 2 548.84549 1095.67643 0.47421 0.00026027 0.039852 2.1872E-05 0.51407 0.00028214 548.8454015245841 51.141 1.0563 54.665 54.163 55.219 3.5246 170 73 3 0 0 0 0.35123 1 10531 10531 10.8 2.0541 1 700690 25444 4862 15845 15854 29649 29649 0.1324168653097786 LRTVVVVIFIY 11 Unmodified _LRTVVVVIFIY_ 0 0 0 REV__L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|13|3|sense REV__L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|13|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 440.95208740234375 3 441.279591 1320.81694 0.06695 2.9544E-05 0.048623 2.1456E-05 0.11557 5.1E-05 441.2796231466831 65.686 0.24146 69.138 69.013 69.255 3.4516 22 16 2 0 0 0 22.551 1 14974 14974 1.4551 0 1 74756 + 25445 27575 15846 15855 29650 29650 0.16936845464579164 LRTVVVVIFIY 11 Unmodified _LRTVVVVIFIY_ 0 0 0 REV__L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|13|3|sense REV__L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|13|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 441.279591 1320.81694 0.18541 8.1818E-05 1.9847 0.0008758 2.1701 0.00095762 441.28186597213767 65.532 0.07103 69.04 68.989 69.06 3.5077 -0.048773 0.0025208 NaN 1.4551 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 43754 + 25446 27575 15846 15855 0.16936845464579164 LRVCQPPP 8 Unmodified _LRVCQPPP_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MULTI-SECPEP UPN48_class_I_Rep_1 5 454.7702331542969 2 455.25238 908.490207 0.024548 1.1176E-05 1.3937 0.00063449 1.4183 0.00064567 455.2542123810396 49.704 0.12756 53.229 53.164 53.292 3.5246 11 8 2 0 0 0 0.72333 1 10060 10060 2.5775 0.27475 1 38053 25447 4130 15847 15856 29651 29651 0.03230166090816056 LRVGRAFIVV 10 Unmodified _LRVGRAFIVV_ 0 0 0 REV__L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|7|1|sense REV__L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 565.1935424804688 2 565.36385 1128.71315 NaN NaN NaN NaN NaN NaN NaN 115.89 1 119.35 118.85 119.85 3.462 0 0 0 0.53105 1 28509 28509 0.45834 0 1 + 25448 28027 15848 15857 29652 29652 0.1539398314750997 LRVKLCDRPR 10 Unmodified _LRVKLCDRPR_ 0 0 0 ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF ENST00000397573.5_1_15:40398252-40398620:-|nuORF MSMS UPN46_class_I_Rep_3 1 628.374267578125 2 628.374423 1254.73429 NaN NaN NaN NaN NaN NaN NaN 41.085 1 41.085 40.585 41.585 0 0 0 0 0.53105 1 8021 8021 0.40072 0 1 25449 6575 15849 15858 29653 29653 0.11711625184739205 LRVLDFAVSFT 11 Unmodified _LRVLDFAVSFT_ 0 0 0 ENST00000605506.1_1_1:84542931-84543057:-|nuORF ENST00000605506.1_1_1:84542931-84543057:-|nuORF ENST00000605506.1_1_1:84542931-84543057:-|nuORF MSMS UPN46_class_I_Rep_3 1 633.8709716796875 2 634.355888 1266.69722 NaN NaN NaN NaN NaN NaN NaN 91.547 1 91.547 91.047 92.047 0 0 0 0 0.38417 1 22120 22120 2.4985 1.0166 1 25450 7675 15850 15859 29654 29654 0.07454232119994231 LRVLRRLA 8 Unmodified _LRVLRRLA_ 0 0 0 ENST00000590513.2_1_17:40706270-40706666:-|nuORF ENST00000590513.2_1_17:40706270-40706666:-|nuORF ENST00000590513.2_1_17:40706270-40706666:-|nuORF MSMS UPN46_class_I_Rep_3 1 499.2965087890625 2 498.843085 995.671617 NaN NaN NaN NaN NaN NaN NaN 119.22 1 119.22 118.72 119.72 0 0 0 0 0.40746 1 29623 29623 0.69038 0 1 25451 7613 15851 15860 29655 29655 0.1736084717886115 LRVQEYLR 8 Unmodified _LRVQEYLR_ 0 0 0 REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B MULTI-MSMS UPN48_class_I_Rep_3 7 538.814697265625 2 538.81419 1075.61383 0.44478 0.00023965 -0.10636 -5.731E-05 0.33841 0.00018234 538.8140628949074 55.517 0.84217 59.073 58.575 59.418 3.5554 99 51 3 0 0 0 0.82752 1 11799 11799 10.824 0 1 419310 + 25452 21260 15852 15861 29656 29656 0.07904540462777732 LRVRWKLL 8 Unmodified _LRVRWKLL_ 0 0 0 Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 542.3894653320312 2 542.361111 1082.70767 NaN NaN NaN NaN NaN NaN NaN 24.155 1 24.155 23.655 24.655 0 0 0 0 0.40746 1 3135 3135 0.69038 0 1 25453 556 15853 15862 29657 29657 0.16962304355752167 LRVRWKLL 8 Unmodified _LRVRWKLL_ 0 0 0 Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense MSMS UPN47_class_I_Rep_1 2 542.3617553710938 2 542.361111 1082.70767 NaN NaN NaN NaN NaN NaN NaN 113.47 1 117.04 116.54 117.54 3.572 0 0 0 0.40746 1 27998 27998 0.69038 0 1 25454 556 15853 15862 29658 29658 0.16962304355752167 LRVRWKLL 8 Unmodified _LRVRWKLL_ 0 0 0 Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense MSMS UPN47_class_I_Rep_2 3 542.7383422851562 2 542.361111 1082.70767 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.09 117.59 118.59 3.5039 0 0 0 0.40746 1 27907 27907 0.69038 0 1 25455 556 15853 15862 29659 29659 0.16962304355752167 LRVRWKLL 8 Unmodified _LRVRWKLL_ 0 0 0 Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|72|1|anti-sense MSMS UPN47_class_I_Rep_2 3 542.7461547851562 2 542.361111 1082.70767 NaN NaN NaN NaN NaN NaN NaN 115.64 1 119.13 118.63 119.63 3.4965 0 0 0 0.40746 1 28201 28201 0.69038 0 1 25456 556 15853 15862 29660 29660 0.16962304355752167 LRVSKLKTFL 10 Unmodified _LRVSKLKTFL_ 0 0 0 L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|37|2|anti-sense L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|37|2|anti-sense L1MEf_dup1180|chr2:86539664-86540396:-|1.0455658301672688|0.0745166300629117|3.81|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_1 5 602.8933715820312 2 602.892441 1203.77033 NaN NaN NaN NaN NaN NaN NaN 95.91 1 99.522 99.022 100.02 3.6124 0 0 0 0.53105 1 23104 23104 1.4819 0 1 25457 13247 15854 15863 29661 29661 0.176594056332533 LRWCWGHEW 9 Unmodified _LRWCWGHEW_ 0 0 0 REV__L1PA14_dup2260|chr10:87461149-87461604:-|1.2420526822467295|0.0630460348333613|4.3|150.0|16|3|sense REV__L1PA14_dup2260|chr10:87461149-87461604:-|1.2420526822467295|0.0630460348333613|4.3|150.0|16|3|sense MSMS UPN47_class_I_Rep_1 2 636.791259765625 2 636.790192 1271.56583 NaN NaN NaN NaN NaN NaN NaN 51.402 1 54.995 54.495 55.495 3.5932 0 0 0 0.4007 1 11355 11355 0.52476 0 1 + 25458 29154 15855 15864 29662 29662 -0.05908856728888168 LRWELKLIV 9 Unmodified _LRWELKLIV_ 0 0 0 REV__Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense REV__Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense MSMS UPN47_class_I_Rep_2 3 585.7469482421875 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 54.676 1 57.995 57.495 58.495 3.3187 0 0 0 0.39518 1 12380 12380 1.8442 0 1 + 25459 17290 15856 15865 29663 29663 0.1555973408749196 LRWQGFFFF 9 Unmodified _LRWQGFFFF_ 0 0 0 L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|107|2|anti-sense L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|107|2|anti-sense L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|107|2|anti-sense MSMS UPN46_class_I_Rep_3 1 624.3197021484375 2 624.321651 1246.62875 NaN NaN NaN NaN NaN NaN NaN 105.54 1 105.54 105.04 106.04 0 0 0 0 0.39518 1 25745 25745 1.8442 0.36234 1 25460 8805 15857 15866 29664 29664 0.015300323307883446 LRWRRPRDK 9 Unmodified _LRWRRPRDK_ 0 0 0 MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MLT1E2_dup1416|chr5:172052082-172052546:+|2.7213946567646565|0.1257576143017411|4.44|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 641.88330078125 2 641.883804 1281.75306 NaN NaN NaN NaN NaN NaN NaN 86.906 1 90.543 90.043 91.043 3.6372 0 0 0 0.4007 1 21711 21711 0.52476 0 1 25461 16370 15858 15867 29665 29665 0.1234492287080684 LRWVRNQR 8 Unmodified _LRWVRNQR_ 0 0 0 REV__L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|88|2|sense REV__L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|88|2|sense MSMS UPN47_class_I_Rep_2 3 564.3306884765625 2 564.330873 1126.64719 NaN NaN NaN NaN NaN NaN NaN 48.59 1 51.937 51.437 52.437 3.3465 0 0 0 0.40625 1 10519 10519 2.3027 0 1 + 25462 29553 15859 15868 29666 29666 0.08893587025340821 LRYATQDTI 9 Unmodified _LRYATQDTI_ 0 0 0 L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|27|2|anti-sense L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|27|2|anti-sense L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 541.2892456054688 2 540.787838 1079.56112 0.4756 0.0002572 -0.79762 -0.00043134 -0.32202 -0.00017414 540.7876505404142 57.468 0.35586 60.76 60.634 60.99 3.2912 51 31 2 0 0 0 0.44742 1 13258 13258 5.2969 0 1 102040 25463 10965 15860 15869 29667 29667 0.024525376093151863 LRYEVPFY 8 Unmodified _LRYEVPFY_ 0 0 0 L1PB1_dup2328|chr3:105403296-105404995:+|4.400762462338808|0.0260023733862323|7.4|151.0|98|3|anti-sense L1PB1_dup2328|chr3:105403296-105404995:+|4.400762462338808|0.0260023733862323|7.4|151.0|98|3|anti-sense L1PB1_dup2328|chr3:105403296-105404995:+|4.400762462338808|0.0260023733862323|7.4|151.0|98|3|anti-sense MSMS UPN46_class_I_Rep_3 1 543.7841186523438 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 65.825 1 65.825 65.325 66.325 0 0 0 0 0.40738 1 14899 14899 0.79363 0 1 25464 15070 15861 15870 29668 29668 0.015226444486188484 LRYFCRHN 8 Unmodified _LRYFCRHN_ 0 0 0 REV__L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|63|3|anti-sense REV__L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|63|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.7779541015625 2 554.777085 1107.53962 0.6243 0.00034635 1.2153 0.00067421 1.8396 0.0010206 554.7778265492177 14.125 0.27294 17.641 17.532 17.805 3.5156 54 36 2 0 0 0 0.82752 1 371 371 0.69038 0 1 39096 + 25465 26633 15862 15871 29669 29669 -0.009851259003653468 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.2927856445312 2 513.292559 1024.57057 0.26675 0.00013692 0.19016 9.7609E-05 0.45691 0.00023453 513.2924664317227 58.709 0.81824 62.126 61.709 62.527 3.4171 80 52 2 0 0 0 0.82752 3 13502 13502;13546;13589 18.135 2.2878 1 186640 25466 10806 15863 15872 29670;29671;29672 29670 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.292236328125 2 513.292559 1024.57057 0.1828 9.383E-05 0.74665 0.00038325 0.92945 0.00047708 513.2925084962845 58.988 0.83916 62.27 61.804 62.643 3.2818 98 54 2 0 0 0 0.82752 3 13638 13638;13677;13727 19.439 2.4967 1 130110 25467 10806 15863 15872 29673;29674;29675 29673 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2930297851562 2 513.292559 1024.57057 0.17454 8.959E-05 1.078 0.00055333 1.2525 0.00064292 513.2929024872475 58.909 0.21156 62.074 61.917 62.129 3.1658 23 12 2 0 0 0 0.82752 1 13718 13718 13.508 0 1 109510 25468 10806 15863 15872 29676 29676 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2923583984375 2 513.292559 1024.57057 0.17954 9.2159E-05 0.43347 0.0002225 0.61301 0.00031465 513.292558586278 59.06 0.5531 62.226 62.115 62.668 3.1658 55 33 2 0 0 0 0.82752 1 13790 13790 18.135 2.2878 1 140030 25469 10806 15863 15872 29677 29677 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.2922973632812 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 58.929 1 62.416 61.916 62.916 3.487 0 0 0 0.36705 1 12903 12903 18.135 2.2878 1 25470 10806 15863 15872 29678 29678 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.29345703125 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 59.077 1 62.557 62.057 63.057 3.4801 0 0 0 0.38547 1 12949 12949 13.508 0 1 25471 10806 15863 15872 29679 29679 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2923583984375 2 513.292559 1024.57057 0.4154 0.00021322 0.35636 0.00018292 0.77177 0.00039614 513.2923794830361 58.967 0.69399 62.465 62.218 62.912 3.4987 71 45 2 0 0 0 0.82752 4 12967 12936;12967;12978;12982 13.508 0 1 108840 25472 10806 15863 15872 29680;29681;29682;29683 29681 0.05926350685513171 LRYNLYAI 8 Unmodified _LRYNLYAI_ 0 0 0 L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense;L1ME1_dup3439|chr2:68763864-68764432:-|1.3121197949084369|0.0016709750202333|9.62|151.0|29|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2928466796875 2 513.292559 1024.57057 0.27182 0.00013952 0.55828 0.00028656 0.8301 0.00042608 513.2924850250797 58.726 0.72835 62.249 62.097 62.825 3.5231 68 47 2 0 0 0 0.82752 4 12790 12740;12746;12790;12845 9.3474 0 1 120100 25473 10806 15863 15872 29684;29685;29686;29687 29686 0.05926350685513171 LRYRRFCY 8 Unmodified _LRYRRFCY_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS UPN48_class_I_Rep_1 5 588.8098754882812 2 588.808385 1175.60222 NaN NaN NaN NaN NaN NaN NaN 113.56 1 117.19 116.69 117.69 3.6314 0 0 0 0.40604 1 27589 27589 2.5775 0.27475 1 + 25474 23183 15864 15873 29688 29688 0.02144020167816052 LRYYWLLF 8 Unmodified _LRYYWLLF_ 0 0 0 REV__ENST00000419016.6_1_9:33281251-33281398:+|nuORF REV__ENST00000419016.6_1_9:33281251-33281398:+|nuORF MSMS UPN47_class_I_Rep_1 2 587.3287353515625 2 587.326402 1172.63825 NaN NaN NaN NaN NaN NaN NaN 61.735 1 65.103 64.603 65.603 3.3681 0 0 0 0.40746 1 14495 14495 0.69038 0 1 + 25475 22236 15865 15874 29689 29689 0.05883800616311419 LSADIRVTI 9 Unmodified _LSADIRVTI_ 0 0 0 ENSG00000144401.14,METTL21A,chr2,-,I7.1,207615692,207620640|33|7.32|1|intron ENSG00000144401.14,METTL21A,chr2,-,I7.1,207615692,207620640|33|7.32|1|intron ENSG00000144401.14,METTL21A,chr2,-,I7.1,207615692,207620640|33|7.32|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 494.2947998046875 2 494.295299 986.576045 0.18197 8.9947E-05 0.1677 8.2891E-05 0.34967 0.00017284 494.2953643796371 60.662 0.43584 64.044 63.773 64.209 3.3815 60 41 2 0 0 0 0.2924 2 14139 14139;14181 14.405 3.4953 1 127490 25476 3352 15866 15875 29690;29691 29690 0.08222029477337855 LSAELGVHI 9 Unmodified _LSAELGVHI_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS UPN47_class_I_Rep_2 3 469.76898193359375 2 469.768917 937.523281 0.13345 6.2693E-05 0.031969 1.5018E-05 0.16542 7.7711E-05 469.76872563824384 59.049 0.37972 62.331 62.029 62.408 3.2818 36 24 3 0 0 0 0.33654 1 13731 13731 11.64 0 1 43411 + 25477 17643 15867 15876 29692 29692 0.052020714145328384 LSAELGVHI 9 Unmodified _LSAELGVHI_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 469.768917 937.523281 0.13345 6.2693E-05 0.031969 1.5018E-05 0.16542 7.7711E-05 469.76872563824384 59.049 0.37972 62.331 62.029 62.408 3.2818 0.131 -4.2536E-07 NaN 11.64 36 24 3 NaN NaN NaN NaN 0 NaN NaN 0 43411 + 25478 17643 15867 15876 0.052020714145328384 LSAELGVHI 9 Unmodified _LSAELGVHI_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MATCH UPN47_class_I_Rep_3 4 2 469.768917 937.523281 -0.12687 -5.9597E-05 0.033855 1.5904E-05 -0.093011 -4.3694E-05 469.7689562271006 58.903 0.14853 62.069 61.98 62.129 3.1658 -0.131 1.3462E-06 NaN 11.64 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 49436 + 25479 17643 15867 15876 0.052020714145328384 LSAFYWVV 8 Unmodified _LSAFYWVV_ 0 0 0 L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|95|3|anti-sense L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|95|3|anti-sense L1ME1_dup20641|chr11:4030887-4032188:-|1.571807090020099|0.020628744697258|6.25|151.0|95|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 492.7625732421875 2 492.763104 983.511654 0.059715 2.9425E-05 -0.59386 -0.00029263 -0.53414 -0.00026321 492.76275599841404 45.265 0.84194 48.618 48.189 49.031 3.3534 73 48 2 0 0 0 0.82752 1 9470 9470 19.439 0 1 147540 25480 12288 15868 15877 29693 29693 0.019238743911841993 LSAGSERKCL 10 Unmodified _LSAGSERKCL_ 0 0 0 ENST00000262525.5_1_16:30791051-30791219:-|nuORF ENST00000262525.5_1_16:30791051-30791219:-|nuORF ENST00000262525.5_1_16:30791051-30791219:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 532.624755859375 2 532.281866 1062.54918 0.3407 0.00018135 -0.64264 -0.00034206 -0.30193 -0.00016071 532.7829681742303 46.242 0.54328 49.992 49.784 50.327 3.7494 43 33 2 0 0 0 0.84575 1 8975 8975 12.241 1.4167 1 112380 25481 5971 15869 15878 29694 29694 0.02040597594486826 LSAGSERKCL 10 Unmodified _LSAGSERKCL_ 0 0 0 ENST00000262525.5_1_16:30791051-30791219:-|nuORF ENST00000262525.5_1_16:30791051-30791219:-|nuORF ENST00000262525.5_1_16:30791051-30791219:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 532.2911987304688 2 532.281866 1062.54918 0.43576 0.00023195 -1.3481 -0.00071757 -0.91234 -0.00048562 532.2809201832298 46.482 0.44176 50.118 49.818 50.259 3.6363 40 26 2 0 0 0 0.84575 1 8961 8961 9.3831 1.473 1 129680 25482 5971 15869 15878 29695 29695 0.02040597594486826 LSAIFATAVS 10 Unmodified _LSAIFATAVS_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 490.2768249511719 2 490.276575 978.538597 0.1425 6.9866E-05 0.27744 0.00013602 0.41994 0.00020589 490.27650769745054 63.46 0.31134 66.82 66.655 66.966 3.3595 36 25 2 0 0 0 0.54466 1 15012 15012 6.2058 0.47393 1 103460 + 25483 19046 15870 15879 29696 29696 0.04846938211710494 LSAIFATAVS 10 Unmodified _LSAIFATAVS_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.276611328125 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 63.342 1 66.701 66.201 67.201 3.3595 0 0 0 0.53105 1 14982 14982 13.042 0.80181 1 + 25484 19046 15870 15879 29697 29697 0.04846938211710494 LSAIFATAVS 10 Unmodified _LSAIFATAVS_ 0 0 0 REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF MSMS UPN47_class_I_Rep_3 4 490.2767028808594 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 63.815 1 66.989 66.489 67.489 3.1741 0 0 0 0.53105 1 15219 15219 9.3831 0.63772 1 + 25485 19046 15870 15879 29698 29698 0.04846938211710494 LSAPEHQRG 9 Unmodified _LSAPEHQRG_ 0 0 0 L1PA12_dup172|chr2:95834249-95834959:-|3.2204738062762965|0.3873614092428724|3.06|151.0|26|1|anti-sense;L1PA12_dup216|chr2:97438877-97439574:-|2.456097261451553|0.2443669595551641|3.33|151.0|35|3|anti-sense L1PA12_dup172|chr2:95834249-95834959:-|3.2204738062762965|0.3873614092428724|3.06|151.0|26|1|anti-sense L1PA12_dup172|chr2:95834249-95834959:-|3.2204738062762965|0.3873614092428724|3.06|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 497.7644348144531 2 497.756872 993.499192 NaN NaN NaN NaN NaN NaN NaN 30.991 1 34.72 34.22 35.22 3.7293 0 0 0 0.38478 1 5139 5139 4.3292 0 1 25486 13712 15871 15880 29699 29699 0.002182309808631544 LSAQLQVVY 9 Unmodified _LSAQLQVVY_ 0 0 0 ENSG00000173905|ENST00000470487|GOLIM4 ENSG00000173905|ENST00000470487|GOLIM4 ENSG00000173905|ENST00000470487|GOLIM4 MULTI-MSMS UPN48_class_I_Rep_2 6 510.7901611328125 2 510.78985 1019.56515 0.30123 0.00015386 0.069298 3.5397E-05 0.37053 0.00018926 510.78963433746827 34.944 0.8138 38.617 38.327 39.141 3.6735 146 80 3 0 0 0 0.42249 1 5822 5822 6.7232 0 1 285470 25487 4654 15872 15881 29700 29700 0.05614627103057046 LSARPRVMR 9 Unmodified _LSARPRVMR_ 0 0 0 ENST00000590034.2_1_19:2244656-2244779:+|nuORF ENST00000590034.2_1_19:2244656-2244779:+|nuORF ENST00000590034.2_1_19:2244656-2244779:+|nuORF MSMS UPN47_class_I_Rep_3 4 543.3239135742188 2 543.32166 1084.62877 NaN NaN NaN NaN NaN NaN NaN 34.774 1 38.038 37.538 38.538 3.2639 0 0 0 0.38639 1 6362 6362 3.9444 1.3669 1 25488 7607 15873 15882 29701 29701 0.08983709059157263 LSARRKKY 8 Unmodified _LSARRKKY_ 0 0 0 ENST00000524631.5_1_1:104068530-104068644:+|nuORF ENST00000524631.5_1_1:104068530-104068644:+|nuORF ENST00000524631.5_1_1:104068530-104068644:+|nuORF MSMS UPN48_class_I_Rep_3 7 511.3182067871094 2 511.3169 1020.61925 NaN NaN NaN NaN NaN NaN NaN 72.618 1 76.155 75.655 76.655 3.5373 0 0 0 0.40604 1 16937 16937 2.5775 0 1 25489 7251 15874 15883 29702 29702 0.10976264045280004 LSASRLLHL 9 Unmodified _LSASRLLHL_ 0 0 0 REV__L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|267|3|anti-sense REV__L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|267|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 505.8129577636719 2 505.311284 1008.60801 -0.039221 -1.9819E-05 0.096329 4.8676E-05 0.057108 2.8857E-05 505.31132651400725 45.459 1.4631 48.812 48.263 49.726 3.3534 151 90 2 0 0 0 0.32682 1 9443 9443 12.241 1.4167 1 226670 + 25490 29616 15875 15884 29703 29703 0.10405441951138528 LSASRLLHL 9 Unmodified _LSASRLLHL_ 0 0 0 REV__L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|267|3|anti-sense REV__L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|267|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 505.311284 1008.60801 0.056246 2.8422E-05 -0.083579 -4.2233E-05 -0.027333 -1.3812E-05 505.31120092444644 45.591 1.1195 48.835 48.347 49.467 3.2441 0.1059 -0.00011258 NaN 12.241 133 66 3 NaN NaN NaN NaN 0 NaN NaN 0 264540 + 25491 29616 15875 15884 0.10405441951138528 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 404.7213134765625 2 404.215986 806.417419 0.094785 3.8313E-05 4.1372 0.0016723 4.232 0.0017106 404.2195003864162 108.46 0.12919 112.1 112.01 112.14 3.6355 30 9 4 0 0 0 0.82752 1 26654 26654 2.8892 0 1 3378400 + 25492 26441 15876 15885 29704 29704 0.00646735569057455 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 404.215986 806.417419 0.094785 3.8313E-05 4.1372 0.0016723 4.232 0.0017106 404.2195003864162 108.46 0.12919 112.1 112.01 112.14 3.6355 0.045209 -0.001318 NaN 2.8892 30 9 4 NaN NaN NaN NaN 0 NaN NaN 0 3378400 + 25493 26441 15876 15885 0.00646735569057455 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 404.215986 806.417419 -0.41301 -0.00016694 5.2463 0.0021206 4.8332 0.0019537 404.21969873609515 108.45 0.11378 111.98 111.92 112.04 3.5333 -0.073053 -0.00042141 NaN 2.8892 31 10 4 NaN NaN NaN NaN 0 NaN NaN 0 4510200 + 25494 26441 15876 15885 0.00646735569057455 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 404.215986 806.417419 -0.61205 -0.0002474 5.3551 0.0021646 4.7431 0.0019172 404.21977015849075 108.45 0.15693 111.99 111.9 112.05 3.5382 -0.067609 -0.00033342 NaN 2.8892 50 15 5 NaN NaN NaN NaN 0 NaN NaN 0 4989100 + 25495 26441 15876 15885 0.00646735569057455 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 404.215986 806.417419 -0.14487 -5.8559E-05 4.5827 0.0018524 4.4378 0.0017938 404.2195508210788 108.44 0.1724 112.07 111.95 112.12 3.6313 0.020567 -0.00095784 NaN 2.8892 35 13 5 NaN NaN NaN NaN 0 NaN NaN 0 4775300 + 25496 26441 15876 15885 0.00646735569057455 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 404.215986 806.417419 0.082244 3.3244E-05 10.661 0.0043093 10.743 0.0043426 404.2196783014732 108.41 0.18225 112.09 111.98 112.16 3.6746 0.034227 0.003956 NaN 2.8892 41 21 4 NaN NaN NaN NaN 0 NaN NaN 0 3643000 + 25497 26441 15876 15885 0.00646735569057455 LSASSFVP 8 Unmodified _LSASSFVP_ 0 0 0 REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense REV__L1MB8_dup875|chr1:212309914-212310990:-|1.069974679643637|0.0370396292987728|4.85|151.0|69|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 404.215986 806.417419 0.096668 3.9075E-05 4.4196 0.0017865 4.5163 0.0018256 404.2196017280173 108.42 0.1082 112.09 112.04 112.15 3.6751 0.040658 -0.0010897 NaN 2.8892 24 8 4 NaN NaN NaN NaN 0 NaN NaN 0 4158200 + 25498 26441 15876 15885 0.00646735569057455 LSATIHAQL 9 Unmodified _LSATIHAQL_ 0 0 0 REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|90|1|anti-sense REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|90|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 477.27423095703125 2 477.274367 952.53418 -0.55268 -0.00026378 0.33663 0.00016066 -0.21605 -0.00010312 477.27452496531777 31.569 0.9069 34.868 34.444 35.351 3.2991 99 73 2 0 0 0 0.42249 1 5334 5334 6.7232 0 1 62550 + 25499 32790 15877 15886 29705 29705 0.056014737887949195 LSAVKLLCMR 10 Unmodified _LSAVKLLCMR_ 0 0 0 ENSG00000162402|ENST00000294383|USP24;ENSG00000162402.14,USP24,chr1,-,I37.1,55121507,55123446|29|10.46|5|intron;ENSG00000162402.14,USP24,chr1,-,I37.1,55121507,55123446|29|10.46|3|intron ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MSMS UPN47_class_I_Rep_1 2 567.330078125 2 567.330304 1132.64606 NaN NaN NaN NaN NaN NaN NaN 84.748 1 88.339 87.839 88.839 3.5914 0 0 0 0.53105 1 21195 21195 3.2813 0 1 25500 3927 15878 15887 29706 29706 0.08503868549951221 LSCHFLFFY 9 Unmodified _LSCHFLFFY_ 0 0 0 REV__Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|32|2|sense REV__Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|32|2|sense MSMS UPN48_class_I_Rep_3 7 588.7806396484375 2 588.78097 1175.54739 NaN NaN NaN NaN NaN NaN NaN 39.839 1 43.495 42.995 43.995 3.6557 0 0 0 0.38478 1 7012 7012 4.3292 0 1 + 25501 32439 15879 15888 29707 29707 -0.03336411423447316 LSCMKWVK 8 Unmodified _LSCMKWVK_ 0 0 0 REV__MSTB-int_dup673|chr12:89648104-89649715:+|2.926546428287266|0.0656254912614785|5.48|151.0|39|3|sense REV__MSTB-int_dup673|chr12:89648104-89649715:+|2.926546428287266|0.0656254912614785|5.48|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 497.7662048339844 2 497.764266 993.513979 NaN NaN NaN NaN NaN NaN NaN 20.413 1 24.061 23.561 24.561 3.648 0 0 0 0.40625 1 1749 1749 2.3027 0.4585 1 + 25502 31896 15880 15889 29708 29708 0.016962635329832665 LSCVCLRPV 9 Unmodified _LSCVCLRPV_ 0 0 0 REV__Tigger3a_dup728|chr2:151451121-151451463:+|1.3681699101284366|0.0259526041882115|5.72|151.0|2|1|sense REV__Tigger3a_dup728|chr2:151451121-151451463:+|1.3681699101284366|0.0259526041882115|5.72|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.76898193359375 2 495.267173 988.519793 -0.091662 -4.5397E-05 -0.37625 -0.00018634 -0.46791 -0.00023174 495.266785384593 42.424 0.52937 45.785 45.609 46.138 3.3611 63 37 2 0 0 0 0.36392 1 8671 8671 10.074 2.1638 1 88924 + 25503 32722 15881 15890 29709 29709 0.025073620446391942 LSCYFKDSVF 10 Unmodified _LSCYFKDSVF_ 0 0 0 L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|110|3|anti-sense L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|110|3|anti-sense L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|110|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 604.78662109375 2 604.78645 1207.55835 0.40218 0.00024323 -0.080703 -4.8808E-05 0.32148 0.00019442 604.7863050698317 69.565 0.50134 72.841 72.473 72.975 3.2761 73 39 2 0 0 0 0.56078 1 16802 16802 3.2813 0 1 130200 25504 10816 15882 15891 29710 29710 -0.037130538398514545 LSDDHPITY 9 Unmodified _LSDDHPITY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 531.3088989257812 2 530.750921 1059.48729 -0.086503 -4.5911E-05 0.56142 0.00029798 0.47492 0.00025206 530.7509777927897 33.55 0.36395 37.248 37.025 37.389 3.6983 43 23 2 0 0 0 0.11959 1 5909 5909 7.9102 1.187 1 70930 + 25505 21338 15883 15892 29711 29711 -0.040074305529969934 LSDEDGKRY 9 Unmodified _LSDEDGKRY_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS UPN47_class_I_Rep_1 2 541.7592163085938 2 541.759278 1081.504 -0.023564 -1.2766E-05 0.42302 0.00022918 0.39946 0.00021641 541.7594800318541 33.206 0.56077 36.905 36.649 37.209 3.6983 83 37 3 0 0 0 0.43153 1 5757 5757 6.2058 0 1 137970 + 25506 18354 15884 15893 29712 29712 -0.033489296670495605 LSDEDGKRY 9 Unmodified _LSDEDGKRY_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS UPN47_class_I_Rep_2 3 541.760009765625 2 541.759278 1081.504 0.0057136 3.0954E-06 0.48032 0.00026022 0.48603 0.00026331 541.7594687327031 33.418 0.54034 36.858 36.617 37.157 3.4398 94 39 3 0 0 0 0.30034 1 5874 5874 13.906 0 1 137740 + 25507 18354 15884 15893 29713 29713 -0.033489296670495605 LSDERFPLI 9 Unmodified _LSDERFPLI_ 0 0 0 REV__ENST00000463426.5_1_13:113864225-113883965:+|nuORF REV__ENST00000463426.5_1_13:113864225-113883965:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 545.3007202148438 2 545.300581 1088.58661 0.39488 0.00021533 0.43864 0.00023919 0.83351 0.00045452 545.8026835948101 68.532 0.38835 71.896 71.713 72.101 3.3646 47 29 2 0 0 0 0.43982 1 16548 16548 5.7319 0 1 115780 + 25508 19322 15885 15894 29714 29714 0.045860121317673475 LSDESHLL 8 Unmodified _LSDESHLL_ 0 0 0 L1PA15_dup2577|chr5:75433821-75435104:-|2.328599346305136|0.027096688319001|6.43|151.0|66|2|anti-sense L1PA15_dup2577|chr5:75433821-75435104:-|2.328599346305136|0.027096688319001|6.43|151.0|66|2|anti-sense L1PA15_dup2577|chr5:75433821-75435104:-|2.328599346305136|0.027096688319001|6.43|151.0|66|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2346496582031 2 457.234907 912.455261 -0.34727 -0.00015879 0.18542 8.4779E-05 -0.16186 -7.4006E-05 457.2348731874281 36.224 0.79566 39.893 39.549 40.345 3.6692 134 57 3 0 0 0 0.82752 1 6713 6713 36.044 0 1 402710 25509 13903 15886 15895 29715 29715 -0.004467982361234135 LSDHVNKYF 9 Unmodified _LSDHVNKYF_ 0 0 0 REV__L1ME3A_dup1708|chr2:87614885-87615805:+|1.0046664664310585|0.013067606449888|6.26|149.0|33|3|sense REV__L1ME3A_dup1708|chr2:87614885-87615805:+|1.0046664664310585|0.013067606449888|6.26|149.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 561.7819213867188 2 561.782556 1121.55056 -0.017473 -9.8162E-06 -0.62773 -0.00035265 -0.6452 -0.00036246 561.7826507372997 40.67 1.1982 44.342 43.856 45.054 3.6719 272 96 4 0 0 0 0.42249 1 7958 7958 6.7232 1.4263 1 363110 + 25510 28007 15887 15896 29716 29716 -0.005354450451022785 LSDIASALRY 10 Unmodified _LSDIASALRY_ 0 0 0 nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF nc|ENSG00000104365|O14920-4|IKBKB nc|ENSG00000104365|O14920-4|IKBKB MULTI-SECPEP UPN47_class_I_Rep_1 2 554.8236083984375 2 554.803488 1107.59242 0.38047 0.00021108 -0.66309 -0.00036789 -0.28262 -0.0001568 554.8031971813809 56.208 0.21128 59.686 59.54 59.751 3.4785 14 9 2 0 0 0 0.84575 1 12816 12816 13.615 6.0059 1 47123 25511 1686 15888 15897 29717 29717 0.0429311064342528 LSDKNIEQY 9 Unmodified _LSDKNIEQY_ 0 0 0 nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1 nc|ENSG00000122068|Q96QD9-3|FYTTD1 nc|ENSG00000122068|Q96QD9-3|FYTTD1 MULTI-MSMS UPN47_class_I_Rep_1 2 555.2772216796875 2 555.277303 1108.54005 -0.027836 -1.5457E-05 -0.54339 -0.00030173 -0.57122 -0.00031719 555.2768975754486 33.953 0.8993 37.651 37.342 38.241 3.6983 140 64 3 0 0 0 0.0071648 4 6041 6004;6041;6082;6122 114.2 31.672 1 438750 25512 2375 15889 15898 29718;29719;29720;29721 29719 -0.009874724901919762 LSDKNIEQY 9 Unmodified _LSDKNIEQY_ 0 0 0 nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1 nc|ENSG00000122068|Q96QD9-3|FYTTD1 nc|ENSG00000122068|Q96QD9-3|FYTTD1 MULTI-MSMS UPN47_class_I_Rep_3 4 555.2762451171875 2 555.277303 1108.54005 -0.12097 -6.7172E-05 -0.65009 -0.00036098 -0.77106 -0.00042815 555.2768030570331 34.348 0.9558 37.612 37.306 38.261 3.2639 141 70 3 0 0 0 0.0058741 6 6276 6203;6240;6276;6313;6317;6349 114.19 31.657 1 417650 25513 2375 15889 15898 29722;29723;29724;29725;29726;29727 29724 -0.009874724901919762 LSDKNIEQY 9 Unmodified _LSDKNIEQY_ 0 0 0 nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1 nc|ENSG00000122068|Q96QD9-3|FYTTD1 nc|ENSG00000122068|Q96QD9-3|FYTTD1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 555.277303 1108.54005 0.045909 2.5492E-05 -0.73736 -0.00040944 -0.69145 -0.00038394 555.2768322498629 34.189 0.85237 37.629 37.328 38.18 3.4398 -0.0015296 -0.00010657 NaN 114.2 140 58 3 NaN NaN NaN NaN 0 NaN NaN 0 476010 25514 2375 15889 15898 -0.009874724901919762 LSDLGKLSY 9 Unmodified _LSDLGKLSY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.27423095703125 2 498.274032 994.533512 NaN NaN NaN NaN NaN NaN NaN 47.396 1 51.091 50.591 51.591 3.6951 0 0 0 0.031346 1 10141 10141 43.982 9.5801 1 25515 1662 15890 15899 29728 29728 0.03602634349101663 LSDLGKLSY 9 Unmodified _LSDLGKLSY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.2750244140625 2 498.274032 994.533512 NaN NaN NaN NaN NaN NaN NaN 47.526 1 51.221 50.721 51.721 3.6951 0 0 0 4.2427E-07 1 10174 10174 73.196 38.264 1 25516 1662 15890 15899 29729 29729 0.03602634349101663 LSDLGKLSY 9 Unmodified _LSDLGKLSY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.27447509765625 2 498.274032 994.533512 NaN NaN NaN NaN NaN NaN NaN 47.653 1 51.348 50.848 51.848 3.6951 0 0 0 6.9091E-12 1 10211 10211 81.915 39.96 1 25517 1662 15890 15899 29730 29730 0.03602634349101663 LSDLGKLSY 9 Unmodified _LSDLGKLSY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 498.27447509765625 2 498.274032 994.533512 0.16281 8.1125E-05 0.58494 0.00029146 0.74775 0.00037259 498.2742809898623 48.029 0.68964 51.27 51.022 51.712 3.2405 120 49 3 0 0 0 0.0059098 6 10428 10354;10356;10392;10428;10467;10515 110.79 52.114 1 416980 25518 1662 15890 15899 29731;29732;29733;29734;29735;29736 29734 0.03602634349101663 LSDLGKLSY 9 Unmodified _LSDLGKLSY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 498.274032 994.533512 0.13133 6.544E-05 0.87022 0.00043361 1.0016 0.00049905 498.2744175030712 47.956 0.75521 51.305 51.041 51.796 3.3492 0.017525 0.00014865 NaN 110.79 113 56 3 NaN NaN NaN NaN 0 NaN NaN 0 382150 25519 1662 15890 15899 0.03602634349101663 LSDQYFHTTH 10 Unmodified _LSDQYFHTTH_ 0 0 0 REV__nc|ENSG00000179029|Q6UX40-2|TMEM107 REV__nc|ENSG00000179029|Q6UX40-2|TMEM107 MSMS UPN46_class_I_Rep_3 1 624.7865600585938 2 624.785827 1247.5571 NaN NaN NaN NaN NaN NaN NaN 30.528 1 30.528 30.028 31.028 0 0 0 0 0.53105 1 4985 4985 1.1933 0 1 + 25520 32070 15891 15900 29737 29737 -0.05677551884377863 LSDSRTLTY 9 Unmodified _LSDSRTLTY_ 0 0 0 HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|16|1|sense HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|16|1|sense HERVIP10FH-int_dup96|chr5:143092464-143094506:-|1.412719146759186|0.0544600931566732|4.7|151.0|16|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 527.9232177734375 2 528.272021 1054.52949 -0.12529 -6.6188E-05 -0.23539 -0.00012435 -0.36068 -0.00019054 528.2717941082935 21.009 0.80761 21.009 20.674 21.482 0 161 89 3 0 0 0 0.10629 1 2296 2296 17.113 0 1 206770 25521 8236 15892 15901 29738 29738 0.0044054485538254085 LSEGGQAEW 9 Unmodified _LSEGGQAEW_ 0 0 0 REV__AluSz_dup40560|chr7:102383396-102383664:+|1.0273511702043503|0.0946852702531632|3.44|151.0|1|1|sense REV__AluSz_dup40560|chr7:102383396-102383664:+|1.0273511702043503|0.0946852702531632|3.44|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 488.7212219238281 2 488.722164 975.429775 0.21809 0.00010659 -0.17786 -8.6926E-05 0.040227 1.966E-05 488.72191060363235 53.661 0.62698 53.661 53.328 53.955 0 97 67 3 0 0 0 0.19147 1 11608 11608 21.537 4.5947 1 363210 + 25522 17202 15893 15902 29739 29739 -0.0589227275858093 LSELRLLFG 9 Unmodified _LSELRLLFG_ 0 0 0 ENSG00000063180|ENST00000084798|CA11 ENSG00000063180|ENST00000084798|CA11 ENSG00000063180|ENST00000084798|CA11 MSMS UPN46_class_I_Rep_3 1 524.315185546875 2 524.313492 1046.61243 NaN NaN NaN NaN NaN NaN NaN 75.227 1 75.227 74.727 75.727 0 0 0 0 0.38639 1 17478 17478 3.9444 0 1 25523 982 15894 15903 29740 29740 0.09098906374060789 LSEPHDFFY 9 Unmodified _LSEPHDFFY_ 0 0 0 REV__ENST00000512908.2_1_5:70398727-70422449:-|nuORF REV__ENST00000512908.2_1_5:70398727-70422449:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 578.2630615234375 2 577.761289 1153.50803 0.49869 0.00028812 0.055001 3.1777E-05 0.55369 0.0003199 577.7612779847399 66.572 0.93739 70.059 69.598 70.536 3.4866 133 63 3 0 0 0 0.41259 1 15269 15269 7.2892 0 1 323590 + 25524 21349 15895 15904 29741 29741 -0.06258840173313729 LSEVNRTGTQY 11 Unmodified _LSEVNRTGTQY_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MSMS UPN47_class_I_Rep_1 2 634.3173828125 2 634.317491 1266.62043 -0.0022218 -1.4093E-06 0.13088 8.3019E-05 0.12866 8.161E-05 634.3175421587289 29.236 0.78226 32.993 32.684 33.467 3.7578 152 61 3 0 0 0 0.15943 4 4610 4572;4610;4650;4686 47.053 36.253 1 393980 25525 4236 15896 15905 29742;29743;29744;29745 29743 -0.0022161116712595685 LSEVNRTGTQY 11 Unmodified _LSEVNRTGTQY_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MSMS UPN47_class_I_Rep_2 3 634.3175048828125 2 634.317491 1266.62043 0.046206 2.9309E-05 0.040157 2.5472E-05 0.086363 5.4782E-05 634.3174606881222 29.389 0.75422 32.881 32.509 33.263 3.4923 165 61 4 0 0 0 0.14152 6 4700 4607;4622;4659;4700;4739;4777 55.467 43.972 1 338590 25526 4236 15896 15905 29746;29747;29748;29749;29750;29751 29749 -0.0022161116712595685 LSEVNRTGTQY 11 Unmodified _LSEVNRTGTQY_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MSMS UPN47_class_I_Rep_3 4 634.3174438476562 2 634.317491 1266.62043 -0.18299 -0.00011607 0.23587 0.00014961 0.05288 3.3543E-05 634.3175647975137 29.548 0.99447 32.871 32.592 33.586 3.3235 188 84 3 0 0 0 0.13898 7 4772 4726;4772;4808;4843;4878;4890;4916 59.496 45.091 1 385100 25527 4236 15896 15905 29752;29753;29754;29755;29756;29757;29758 29753 -0.0022161116712595685 LSEVNRTGTQY 11 Unmodified _LSEVNRTGTQY_ 0 0 0 nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 nc|ENSG00000166401|P50452-2|SERPINB8 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 634.317491 1266.62043 0.046138 2.9266E-05 -0.45169 -0.00028651 -0.40555 -0.00025725 634.3171437785178 29.799 0.16208 33.291 33.254 33.416 3.4923 0.14874 -0.00072373 NaN 47.053 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 39715 25528 4236 15896 15905 -0.0022161116712595685 LSFASVVPAV 10 Unmodified _LSFASVVPAV_ 0 0 0 REV__nc|ENSG00000168229|Q13258-2|PTGDR REV__nc|ENSG00000168229|Q13258-2|PTGDR MULTI-MSMS UPN47_class_I_Rep_1 2 495.2867126464844 2 495.286943 988.559333 0.17155 8.4964E-05 -0.18099 -8.9641E-05 -0.0094424 -4.6767E-06 495.28684241724585 61.667 1.0781 65.035 64.655 65.733 3.3681 182 79 3 0 0 0 0.48573 2 14420 14420;14609 13.042 0 1 783110 + 25529 20262 15897 15906 29759;29760 29759 0.0645952859136969 LSFASVVPAV 10 Unmodified _LSFASVVPAV_ 0 0 0 REV__nc|ENSG00000168229|Q13258-2|PTGDR REV__nc|ENSG00000168229|Q13258-2|PTGDR MULTI-MSMS UPN47_class_I_Rep_3 4 495.2869567871094 2 495.286943 988.559333 0.17252 8.5447E-05 -0.18307 -9.0673E-05 -0.010553 -5.2267E-06 495.28683422719524 62.157 1.1613 65.323 64.829 65.99 3.1667 143 75 2 0 0 0 0.48573 1 14628 14628 13.042 0 1 709660 + 25530 20262 15897 15906 29761 29761 0.0645952859136969 LSFCSRQP 8 Unmodified _LSFCSRQP_ 0 0 0 ENST00000377365.3_1_5:169311172-169311292:-|nuORF ENST00000377365.3_1_5:169311172-169311292:-|nuORF ENST00000377365.3_1_5:169311172-169311292:-|nuORF MSMS UPN47_class_I_Rep_1 2 469.23040771484375 2 469.231645 936.448736 NaN NaN NaN NaN NaN NaN NaN 40.393 1 44.06 43.56 44.56 3.6668 0 0 0 0.40643 1 8005 8005 2.0598 0 1 25531 6457 15898 15907 29762 29762 -0.022030146685096952 LSFCWSWTF 9 Unmodified _LSFCWSWTF_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|70|1|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.762451171875 2 588.762778 1175.511 0.39982 0.0002354 -0.44066 -0.00025944 -0.040835 -2.4042E-05 588.762425323154 47.983 0.80441 51.505 51.167 51.971 3.5219 81 55 2 0 0 0 0.42249 2 9525 9525;9570 6.7232 0 1 190730 + 25532 27546 15899 15908 29763;29764 29763 -0.06973288320205029 LSFCWSWTF 9 Unmodified _LSFCWSWTF_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|70|1|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 588.7630615234375 2 588.762778 1175.511 0.38194 0.00022487 -0.48522 -0.00028568 -0.10328 -6.0806E-05 588.7624911072674 47.825 0.58158 51.561 51.158 51.739 3.7361 70 40 2 0 0 0 0.35081 1 9448 9448 10.824 0 1 183520 + 25533 27546 15899 15908 29765 29765 -0.06973288320205029 LSFCWSWTF 9 Unmodified _LSFCWSWTF_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|70|1|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.7623901367188 2 588.762778 1175.511 0.42737 0.00025162 -0.58448 -0.00034412 -0.15711 -9.2501E-05 588.7623596229741 47.846 0.64369 51.48 51.254 51.898 3.6339 85 40 3 0 0 0 0.42249 1 9425 9425 6.7232 0 1 223840 + 25534 27546 15899 15908 29766 29766 -0.06973288320205029 LSFEEITKI 9 Unmodified _LSFEEITKI_ 0 0 0 nc|ENSG00000155719|Q7RTW8-4|OTOA;ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA nc|ENSG00000155719|Q7RTW8-4|OTOA nc|ENSG00000155719|Q7RTW8-4|OTOA MSMS UPN47_class_I_Rep_3 4 540.3027954101562 2 540.30279 1078.59103 NaN NaN NaN NaN NaN NaN NaN 69.481 1 72.686 72.186 73.186 3.2044 0 0 0 0.38639 1 16944 16944 3.9444 0 1 25535 3708 15900 15909 29767 29767 0.05487476554640125 LSFFTYETSN 10 Unmodified _LSFFTYETSN_ 0 0 0 REV__L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|98|2|sense REV__L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|98|2|sense MSMS UPN48_class_I_Rep_3 7 604.7760009765625 2 604.777136 1207.53972 NaN NaN NaN NaN NaN NaN NaN 24.448 1 28.217 27.717 28.717 3.769 0 0 0 0.53105 1 2831 2831 1.4819 0.28856 1 + 25536 29025 15901 15910 29768 29768 -0.05574892210051985 LSFGSCFLQF 10 Unmodified _LSFGSCFLQF_ 0 0 0 REV__L1PA6_dup5561|chr18:48648986-48655135:+|2.3816597906163794|0.1167381761473922|4.35|151.0|238|1|anti-sense REV__L1PA6_dup5561|chr18:48648986-48655135:+|2.3816597906163794|0.1167381761473922|4.35|151.0|238|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.7764282226562 2 574.775885 1147.53722 0.048045 2.7615E-05 -0.41225 -0.00023695 -0.3642 -0.00020934 574.775632670618 16.782 0.5549 20.169 19.949 20.504 3.3864 106 63 2 0 0 0 0.56333 1 1166 1166 1.4819 0 1 42880 + 25537 29712 15902 15911 29769 29769 -0.030650191487211487 LSFHHFNII 9 Unmodified _LSFHHFNII_ 0 0 0 HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|83|3|anti-sense HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|83|3|anti-sense HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|83|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3040771484375 2 564.303458 1126.59236 0.42118 0.00023767 0.033872 1.9114E-05 0.45505 0.00025678 564.3033799249791 80.808 0.64322 84.296 84.064 84.707 3.4874 88 64 2 0 0 0 0.43153 1 20164 20164 6.2058 0.47393 1 130230 25538 7888 15903 15912 29770 29770 0.03413155434077453 LSFHHFNII 9 Unmodified _LSFHHFNII_ 0 0 0 HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|83|3|anti-sense HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|83|3|anti-sense HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|83|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3037719726562 2 564.303458 1126.59236 0.47209 0.0002664 0.29843 0.00016841 0.77053 0.00043481 564.3034037908269 81.29 0.97658 84.613 84.084 85.061 3.3231 185 110 2 0 0 0 0.36392 1 20361 20361 10.074 10.074 1 222780 25539 7888 15903 15912 29771 29771 0.03413155434077453 LSFHLYQI 8 Unmodified _LSFHLYQI_ 0 0 0 L1ME1_dup27150|chr17:1367683-1367870:+|1.1829023373723566|0.0146206576151774|6.34|151.0|1|1|sense L1ME1_dup27150|chr17:1367683-1367870:+|1.1829023373723566|0.0146206576151774|6.34|151.0|1|1|sense L1ME1_dup27150|chr17:1367683-1367870:+|1.1829023373723566|0.0146206576151774|6.34|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.77972412109375 2 510.779285 1019.54402 0.35992 0.00018384 -1.1821 -0.00060382 -0.82223 -0.00041998 510.778566649442 25.8 0.6095 29.433 29.164 29.774 3.6333 83 66 2 0 0 0 0.82752 1 3142 3142 5.2307 0 1 92685 25540 12351 15904 15913 29772 29772 0.035026617941639415 LSFLQPQWL 9 Unmodified _LSFLQPQWL_ 0 0 0 REV__L1MC2_dup5812|chr19:17104743-17105207:-|2.631373633937559|0.3075891595511144|3.1|151.0|28|3|anti-sense REV__L1MC2_dup5812|chr19:17104743-17105207:-|2.631373633937559|0.3075891595511144|3.1|151.0|28|3|anti-sense MSMS UPN48_class_I_Rep_2 6 566.3141479492188 2 566.313492 1130.61243 NaN NaN NaN NaN NaN NaN NaN 35.153 1 38.826 38.326 39.326 3.6735 0 0 0 0.38478 1 5758 5758 4.3292 0 1 + 25541 26694 15905 15914 29773 29773 0.05234906374039383 LSFLVIKLK 9 Unmodified _LSFLVIKLK_ 0 0 0 L1MC4_dup12282|chr8:102356787-102357341:+|1.2392776490037605|0.068367812450736|4.18|151.0|37|3|anti-sense L1MC4_dup12282|chr8:102356787-102357341:+|1.2392776490037605|0.068367812450736|4.18|151.0|37|3|anti-sense L1MC4_dup12282|chr8:102356787-102357341:+|1.2392776490037605|0.068367812450736|4.18|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_1 2 530.8584594726562 2 530.860078 1059.7056 NaN NaN NaN NaN NaN NaN NaN 72.305 1 75.685 75.185 76.185 3.3799 0 0 0 0.40038 1 17684 17684 0.6015 0 1 25542 11399 15906 15915 29774 29774 0.1781383082723096 LSFPIFLHF 9 Unmodified _LSFPIFLHF_ 0 0 0 L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|73|1|anti-sense L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|73|1|anti-sense L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|73|1|anti-sense MSMS UPN48_class_I_Rep_1 5 560.8115844726562 2 560.813128 1119.6117 NaN NaN NaN NaN NaN NaN NaN 45.309 1 48.826 48.326 49.326 3.5162 0 0 0 0.35339 1 8724 8724 7.9102 0 1 25543 12143 15907 15916 29775 29775 0.0566811172495818 LSFPLPAESPF 11 Unmodified _LSFPLPAESPF_ 0 0 0 HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|99|1|anti-sense HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|99|1|anti-sense HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|99|1|anti-sense MSMS UPN46_class_I_Rep_3 1 602.8157958984375 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 68.193 1 68.193 67.693 68.693 0 0 0 0 0.36307 1 15557 15557 8.1555 1.0538 1 25544 8123 15908 15917 29776 29776 0.02391165445965271 LSFPSWDQGY 10 Unmodified _LSFPSWDQGY_ 0 0 0 L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|196|1|anti-sense L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|196|1|anti-sense L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|196|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 600.2721557617188 2 600.272021 1198.52949 0.42601 0.00025572 0.087306 5.2407E-05 0.51331 0.00030813 600.2719422213147 59.294 1.1466 62.711 62.263 63.409 3.4171 187 75 3 0 0 0 0.35076 2 13743 13743;13782 24.021 24.021 1 358090 25545 15188 15909 15918 29777;29778 29777 -0.06183455144605432 LSFPSWDQGY 10 Unmodified _LSFPSWDQGY_ 0 0 0 L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|196|1|anti-sense L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|196|1|anti-sense L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|196|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 600.272216796875 2 600.272021 1198.52949 0.36196 0.00021727 0.1133 6.8009E-05 0.47525 0.00028528 600.271989464638 59.577 1.2488 62.742 62.369 63.618 3.1651 189 82 3 0 0 0 0.41718 2 13934 13934;13971 18.146 18.146 1 384770 25546 15188 15909 15918 29779;29780 29779 -0.06183455144605432 LSFPTTKTY 9 Unmodified _LSFPTTKTY_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 529.2828369140625 2 529.281857 1056.54916 0.30501 0.00016143 0.40888 0.00021642 0.71389 0.00037785 529.2820105642952 47.663 0.71468 51.185 50.864 51.578 3.5219 104 59 2 0 0 0 0.061655 2 9409 9409;9452 43.982 17.714 1 233320 + 25547 5235 15910 15919 29781;29782 29781 0.02314920866160719 LSFPTTKTY 9 Unmodified _LSFPTTKTY_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 529.2822265625 2 529.281857 1056.54916 0.3171 0.00016783 0.42042 0.00022252 0.73752 0.00039036 529.2819171462961 47.391 0.73815 51.128 50.778 51.516 3.7361 113 67 2 0 0 0 0.12096 1 9356 9356 29.841 3.5724 1 350330 + 25548 5235 15910 15919 29783 29783 0.02314920866160719 LSFPTTKTY 9 Unmodified _LSFPTTKTY_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 529.281982421875 2 529.281857 1056.54916 0.4055 0.00021462 0.24286 0.00012854 0.64837 0.00034317 529.2819087001517 47.547 0.67021 51.181 50.966 51.636 3.6339 92 54 3 0 0 0 0.048662 3 9343 9306;9343;9397 49.554 8.08 1 306490 + 25549 5235 15910 15919 29784;29785;29786 29785 0.02314920866160719 LSFPTTKTY 9 Unmodified _LSFPTTKTY_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 529.281857 1056.54916 0.11603 6.1414E-05 0.52731 0.00027909 0.64334 0.00034051 529.281908152628 47.35 0.4218 51.045 50.724 51.146 3.6951 -0.086833 0.00016311 NaN 49.554 44 39 2 NaN NaN NaN NaN 0 NaN NaN 0 130730 + 25550 5235 15910 15919 0.02314920866160719 LSFPTTKTY 9 Unmodified _LSFPTTKTY_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 529.281857 1056.54916 0.30482 0.00016133 0.7276 0.00038511 1.0324 0.00054644 529.2823247958185 47.882 0.13847 51.122 51.089 51.227 3.2405 -0.010177 0.00037513 NaN 49.554 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 85562 + 25551 5235 15910 15919 0.02314920866160719 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 602.8159790039062 2 602.816064 1203.61758 0.54211 0.0003268 0.066229 3.9924E-05 0.60834 0.00036672 602.8159945812095 68.434 0.32157 68.434 68.159 68.481 0 52 35 3 0 0 0 0.17281 1 15630 15630 62.869 22.919 1 506770 + 25552 5235 15911 15920 29787 29787 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN46_class_I_Rep_3 1 602.8165283203125 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 68.318 1 68.318 67.818 68.818 0 0 0 0 0.53105 1 15593 15593 10.8 2.0541 1 + 25553 5235 15911 15920 29788 29788 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_1 2 602.8164672851562 2 602.816064 1203.61758 0.40766 0.00024575 0.24856 0.00014983 0.65622 0.00039558 602.8160823064402 62.659 0.96102 66.018 65.606 66.567 3.3595 174 63 4 0 0 0 0.22158 5 14735 14735;14774;14812;14853;14895 53.317 28.326 1 574850 + 25554 5235 15911 15920 29789;29790;29791;29792;29793 29789 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_2 3 602.8162841796875 2 602.816064 1203.61758 0.42749 0.0002577 0.13859 8.3541E-05 0.56608 0.00034124 602.8160203021479 62.946 1.2005 66.202 65.741 66.941 3.2558 208 83 4 0 0 0 0.21184 7 14899 14822;14863;14899;14939;14978;15015;15051 53.317 27.049 1 628910 + 25555 5235 15911 15920 29794;29795;29796;29797;29798;29799;29800 29796 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_3 4 602.8162231445312 2 602.816064 1203.61758 0.41929 0.00025276 0.06003 3.6187E-05 0.47932 0.00028894 602.8160038250286 62.985 1.1149 66.155 65.743 66.858 3.1698 190 74 3 0 0 0 0.14683 7 14937 14892;14937;14976;15017;15058;15100;15141 67.081 30.575 1 652890 + 25556 5235 15911 15920 29801;29802;29803;29804;29805;29806;29807 29802 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 602.8163452148438 2 602.816064 1203.61758 0.5536 0.00033372 0.098655 5.9471E-05 0.65225 0.00039319 602.8160316719137 62.949 1.1435 66.412 65.98 67.123 3.4625 253 85 4 0 0 0 2.1118E-06 7 14167 14087;14126;14167;14204;14243;14280;14322 118.21 49.914 1 2331000 + 25557 5235 15911 15920 29808;29809;29810;29811;29812;29813;29814 29810 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 602.81640625 2 602.816064 1203.61758 0.53386 0.00032182 0.076179 4.5922E-05 0.61004 0.00036774 602.8160269108029 62.936 1.1055 66.41 65.893 66.999 3.4738 270 83 4 0 0 0 1.2379E-06 5 14070 14070;14112;14153;14190;14229 128.58 49.851 1 3095300 + 25558 5235 15911 15920 29815;29816;29817;29818;29819 29815 0.023911654459880083 LSFPTTKTYF 10 Unmodified _LSFPTTKTYF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 602.8163452148438 2 602.816064 1203.61758 0.55665 0.00033556 0.064459 3.8857E-05 0.62111 0.00037442 602.8160007381053 62.689 1.1952 66.199 65.817 67.012 3.5104 266 90 4 0 0 0 2.1118E-06 8 13952 13913;13952;13994;14033;14071;14114;14147;14159 118.21 58.136 1 2400200 + 25559 5235 15911 15920 29820;29821;29822;29823;29824;29825;29826;29827 29821 0.023911654459880083 LSFRDAVLR 9 Unmodified _LSFRDAVLR_ 0 0 0 L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|209|1|anti-sense L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|209|1|anti-sense L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|209|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 538.8145751953125 2 538.81419 1075.61383 0.58945 0.0003176 -0.2866 -0.00015442 0.30285 0.00016318 538.814020890326 55.533 0.82462 59.089 58.64 59.465 3.5559 89 50 2 0 0 0 0.30034 1 11795 11795 13.906 0 1 340320 25560 14763 15912 15921 29828 29828 0.07904540462777732 LSFRQYVL 8 Unmodified _LSFRQYVL_ 0 0 0 REV__L1MEc_dup10570|chr9:137804246-137804876:-|1.5653333276268018|0.1063156128062236|3.88|150.0|45|3|anti-sense REV__L1MEc_dup10570|chr9:137804246-137804876:-|1.5653333276268018|0.1063156128062236|3.88|150.0|45|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2925415039062 2 513.292559 1024.57057 0.38283 0.0001965 0.0020157 1.0346E-06 0.38484 0.00019754 513.2923740952936 62.23 0.77628 65.704 65.275 66.052 3.4738 132 59 3 0 0 0 0.82752 1 13980 13980 7.2892 0 1 423680 + 25561 28347 15913 15922 29829 29829 0.05926350685513171 LSFRSSFYI 9 Unmodified _LSFRSSFYI_ 0 0 0 L1MB3_dup8579|chr9:95943531-95944543:+|1.0928243923756988|0.0671280692865703|4.03|150.0|53|1|anti-sense L1MB3_dup8579|chr9:95943531-95944543:+|1.0928243923756988|0.0671280692865703|4.03|150.0|53|1|anti-sense L1MB3_dup8579|chr9:95943531-95944543:+|1.0928243923756988|0.0671280692865703|4.03|150.0|53|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.2946166992188 2 560.295299 1118.57605 0.43738 0.00024506 0.075112 4.2085E-05 0.51249 0.00028714 560.2949708556147 66.961 1.0669 70.152 69.825 70.892 3.1914 182 78 3 0 0 0 0.32682 1 16258 16258 12.241 0.60036 1 302470 25562 10464 15914 15923 29830 29830 0.02150029477343196 LSFRVVLE 8 Unmodified _LSFRVVLE_ 0 0 0 REV__ENST00000556438.6_1_14:55603944-55604055:+|nuORF REV__ENST00000556438.6_1_14:55603944-55604055:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 481.7868957519531 2 481.78711 961.559667 0.18021 8.6821E-05 0.10322 4.9729E-05 0.28343 0.00013655 481.78706309042354 41.222 0.77042 44.973 44.6 45.371 3.7509 107 81 2 0 0 0 0.82752 1 7516 7516 11.64 0 1 107670 + 25563 22992 15915 15924 29831 29831 0.07734948311235712 LSFVGPIGTV 10 Unmodified _LSFVGPIGTV_ 0 0 0 REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|50|3|sense REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.2868957519531 2 495.286943 988.559333 0.26614 0.00013181 -0.20361 -0.00010084 0.062532 3.0971E-05 495.28678618344367 62.068 1.2937 65.328 64.885 66.179 3.2594 148 85 2 0 0 0 0.43106 1 14681 14681 17.113 0.96379 1 974740 + 25564 32181 15916 15925 29832 29832 0.06459528591381059 LSFYGYNGSF 10 Unmodified _LSFYGYNGSF_ 0 0 0 REV__Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|46|1|anti-sense REV__Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|46|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 577.7614135742188 2 577.761289 1153.50803 0.48272 0.0002789 -0.066446 -3.839E-05 0.41628 0.00024051 577.76114662698 66.642 0.86072 70.093 69.755 70.616 3.4516 102 55 2 0 0 0 0.52083 1 15331 15331 9.3831 1.2276 1 257580 + 25565 17296 15917 15926 29833 29833 -0.06258840173336466 LSFYTSMIMI 10 Unmodified _LSFYTSMIMI_ 0 0 0 REV__L1MEd_dup16586|chr12:132000059-132000668:-|1.02848948483639|0.0675254384742277|3.93|150.0|43|3|anti-sense REV__L1MEd_dup16586|chr12:132000059-132000668:-|1.02848948483639|0.0675254384742277|3.93|150.0|43|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 603.3005981445312 2 603.300878 1204.5872 0.046204 2.7875E-05 -0.051027 -3.0784E-05 -0.0048223 -2.9093E-06 603.3008115698499 30.495 0.68114 33.977 33.499 34.18 3.4821 92 53 2 0 0 0 0.56033 1 4963 4963 3.5965 0 1 140730 + 25566 28548 15918 15927 29834 29834 -0.006906525350814263 LSFYWAYA 8 Unmodified _LSFYWAYA_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS UPN48_class_I_Rep_3 7 510.74493408203125 2 510.744911 1019.47527 NaN NaN NaN NaN NaN NaN NaN 111.44 1 115.11 114.61 115.61 3.6654 0 0 0 0.40738 1 26450 26450 0.79363 0 1 + 25567 17556 15919 15928 29835 29835 -0.03369002505542085 LSGDFFVVF 9 Unmodified _LSGDFFVVF_ 0 0 0 REV__L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|329|3|anti-sense REV__L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|329|3|anti-sense MSMS UPN47_class_I_Rep_3 4 515.7672119140625 2 515.765843 1029.51713 NaN NaN NaN NaN NaN NaN NaN 53.332 1 56.526 56.026 57.026 3.1948 0 0 0 0.34056 1 12022 12022 8.5933 0.68312 1 + 25568 29495 15920 15929 29836 29836 0.0035555318299884675 LSGEYEWSE 9 Unmodified _LSGEYEWSE_ 0 0 0 REV__ENSG00000096654|ENST00000683788|ZNF184 REV__ENSG00000096654|ENST00000683788|ZNF184 MSMS UPN47_class_I_Rep_1 2 550.2166137695312 2 550.232561 1098.45057 NaN NaN NaN NaN NaN NaN NaN 118.49 1 122.1 121.6 122.6 3.6036 0 0 0 0.39518 1 29406 29406 1.8442 1.0506 1 + 25569 18058 15921 15930 29837 29837 -0.09471727169579935 LSGIIQRKA 9 Unmodified _LSGIIQRKA_ 0 0 0 REV__MLT1E2_dup1393|chr5:141600027-141600484:+|1.5219438429102323|0.0135232716405483|6.81|150.0|7|2|sense REV__MLT1E2_dup1393|chr5:141600027-141600484:+|1.5219438429102323|0.0135232716405483|6.81|150.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.31103515625 2 493.311284 984.608014 -0.14447 -7.1271E-05 -0.033631 -1.6591E-05 -0.17811 -8.7861E-05 493.3111936915094 44.49 0.86303 48.185 47.885 48.748 3.6951 87 60 2 0 0 0 0.43153 1 9232 9232 6.2058 0.9089 1 107350 + 25570 31694 15922 15931 29838 29838 0.11509441951125154 LSGKFFISL 9 Unmodified _LSGKFFISL_ 0 0 0 L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|66|2|anti-sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|66|2|anti-sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|66|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 506.2974853515625 2 506.29731 1010.58007 0.19463 9.8542E-05 0.17301 8.7597E-05 0.36765 0.00018614 506.2972429853537 64.846 0.6284 68.202 67.874 68.503 3.3557 73 53 2 0 0 0 0.26468 1 15410 15410 16.149 0.30192 1 100550 25571 9966 15923 15932 29839 29839 0.0752011897105831 LSGLKGPGRG 10 Unmodified _LSGLKGPGRG_ 0 0 0 REV__LTR26_dup93|chr2:54044836-54045431:+|1.0611958639773291|0.0922673738619119|3.52|151.0|22|1|anti-sense REV__LTR26_dup93|chr2:54044836-54045431:+|1.0611958639773291|0.0922673738619119|3.52|151.0|22|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 471.2801818847656 2 471.279983 940.545414 0.24303 0.00011453 0.058699 2.7664E-05 0.30173 0.0001422 471.27991142508995 87.15 0.18795 87.15 87.028 87.216 0 29 19 3 0 0 0 0.84575 1 20850 20850 3.2813 0 1 261850 + 25572 30890 15924 15933 29840 29840 0.07276295882957129 LSGLVHSTLYA 11 Unmodified _LSGLVHSTLYA_ 0 0 0 L1ME3A_dup14823|chr20:8410032-8410474:-|1.4098154484443917|0.0083060979357836|7.41|150.0|27|2|anti-sense L1ME3A_dup14823|chr20:8410032-8410474:-|1.4098154484443917|0.0083060979357836|7.41|150.0|27|2|anti-sense L1ME3A_dup14823|chr20:8410032-8410474:-|1.4098154484443917|0.0083060979357836|7.41|150.0|27|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.8192138671875 2 580.819138 1159.62372 0.404 0.00023465 0.13154 7.6401E-05 0.53554 0.00031105 580.8191563824441 56.892 1.0242 60.435 60.124 61.148 3.5427 273 100 4 0 0 0 0.32821 1 12304 12304 13.042 0.80181 1 1117500 25573 12652 15925 15934 29841 29841 0.05029683677548746 LSGLVPVKLP 10 Unmodified _LSGLVPVKLP_ 0 0 0 ENST00000590450.5_1_17:73845072-73851378:-|nuORF ENST00000590450.5_1_17:73845072-73851378:-|nuORF ENST00000590450.5_1_17:73845072-73851378:-|nuORF MSMS UPN46_class_I_Rep_3 1 511.83245849609375 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 27.686 1 27.686 27.186 28.186 0 0 0 0 0.53105 1 4144 4144 1.4819 0.79152 1 25574 7612 15926 15935 29842 29842 0.14360667413507144 LSGMPECKF 9 Unmodified _LSGMPECKF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MSMS UPN48_class_I_Rep_1 5 506.23553466796875 2 506.235538 1010.45652 0.26793 0.00013564 -0.51904 -0.00026276 -0.25111 -0.00012712 506.2353756643371 55.039 1.1539 58.547 58.163 59.317 3.5082 194 75 4 0 0 0 0.047711 6 11722 11637;11679;11722;11760;11803;11843 49.933 9.5341 1 2392900 25575 3898 15927 15936 29843;29844;29845;29846;29847;29848 29845 -0.048286234632428204 LSGMPECKF 9 Unmodified _LSGMPECKF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MSMS UPN48_class_I_Rep_2 6 506.2355041503906 2 506.235538 1010.45652 0.42727 0.0002163 -0.66077 -0.00033451 -0.2335 -0.00011821 506.2353292667415 54.994 1.0706 58.55 58.216 59.287 3.5559 192 63 4 0 0 0 0.027484 6 11674 11594;11634;11674;11715;11755;11793 58.679 14.272 1 2551800 25576 3898 15927 15936 29849;29850;29851;29852;29853;29854 29851 -0.048286234632428204 LSGMPECKF 9 Unmodified _LSGMPECKF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MSMS UPN48_class_I_Rep_3 7 506.2355651855469 2 506.235538 1010.45652 0.14264 7.2211E-05 -0.36268 -0.0001836 -0.22004 -0.00011139 506.23545373493397 55.014 1.3895 58.584 58.137 59.526 3.5694 198 87 4 0 0 0 0.027484 6 11612 11525;11570;11612;11651;11691;11737 58.679 14.272 1 2114500 25577 3898 15927 15936 29855;29856;29857;29858;29859;29860 29857 -0.048286234632428204 LSGMPECKF 9 Unmodified _LSGMPECKF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 506.235538 1010.45652 0.414 0.00020958 -0.70032 -0.00035453 -0.28633 -0.00014495 506.2352718421371 54.643 0.064156 58.224 58.178 58.242 3.5817 -0.16128 -0.0001791 NaN 49.933 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 41419 25578 3898 15927 15936 -0.048286234632428204 LSGNSSEEI 9 Unmodified _LSGNSSEEI_ 0 0 0 REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 468.27008056640625 2 468.219454 934.424355 -0.39548 -0.00018517 -0.24466 -0.00011455 -0.64014 -0.00029973 468.2193082666787 16.741 0.47447 20.264 20.081 20.555 3.5224 92 52 2 0 0 0 0.12207 1 1166 1166 5.7319 2.1354 1 54301 + 25579 19271 15928 15937 29861 29861 -0.04547996341034377 LSGNSSEEI 9 Unmodified _LSGNSSEEI_ 0 0 0 REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 468.219454 934.424355 -0.3545 -0.00016598 -0.23904 -0.00011192 -0.59354 -0.00027791 468.2192775500167 16.911 0.63587 20.298 20.113 20.749 3.3864 0.0083291 -0.00014917 NaN 5.7319 108 69 2 NaN NaN NaN NaN 0 NaN NaN 0 49095 + 25580 19271 15928 15937 -0.04547996341034377 LSGNSSEEI 9 Unmodified _LSGNSSEEI_ 0 0 0 REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 468.219454 934.424355 -0.87146 -0.00040803 0.16527 7.7383E-05 -0.70618 -0.00033065 468.21944770808926 16.945 0.53616 20.307 20.071 20.607 3.3619 0.017436 0.00022945 NaN 5.7319 93 58 2 NaN NaN NaN NaN 0 NaN NaN 0 65089 + 25581 19271 15928 15937 -0.04547996341034377 LSGTEAKYM 9 Unmodified _LSGTEAKYM_ 0 0 0 REV__L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|54|2|sense REV__L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|54|2|sense MSMS UPN47_class_I_Rep_1 2 500.3138732910156 2 500.244418 998.474282 NaN NaN NaN NaN NaN NaN NaN 73.265 1 76.651 76.151 77.151 3.3861 0 0 0 0.38478 1 17980 17980 4.3292 0 1 + 25582 29565 15929 15938 29862 29862 -0.025015849367377996 LSGTHGAAR 9 Unmodified _LSGTHGAAR_ 0 0 0 REV__MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|11|2|anti-sense REV__MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_1 2 435.2335205078125 2 435.233033 868.451513 NaN NaN NaN NaN NaN NaN NaN 28.481 1 32.247 31.747 32.747 3.7662 0 0 0 0.39518 1 4392 4392 1.8442 0 1 + 25583 31786 15930 15939 29863 29863 0.012025767806676413 LSGTHGAAR 9 Unmodified _LSGTHGAAR_ 0 0 0 REV__MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|11|2|anti-sense REV__MLT1J1_dup2823|chr9:89385022-89385261:+|1.940588704850116|0.4268572688453879|2.18|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_2 3 435.2333984375 2 435.233033 868.451513 NaN NaN NaN NaN NaN NaN NaN 27.845 1 31.343 30.843 31.843 3.4986 0 0 0 0.39518 1 4239 4239 1.8442 0 1 + 25584 31786 15930 15939 29864 29864 0.012025767806676413 LSGWWLLKV 9 Unmodified _LSGWWLLKV_ 0 0 0 Tigger1_dup5913|chr7:130117001-130117569:-|1.0724997177538242|0.1316706667778347|3.03|151.0|20|1|anti-sense Tigger1_dup5913|chr7:130117001-130117569:-|1.0724997177538242|0.1316706667778347|3.03|151.0|20|1|anti-sense Tigger1_dup5913|chr7:130117001-130117569:-|1.0724997177538242|0.1316706667778347|3.03|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 551.32373046875 2 551.326402 1100.63825 NaN NaN NaN NaN NaN NaN NaN 63.158 1 66.327 65.827 66.827 3.1698 0 0 0 0.36505 1 15024 15024 7.2892 0.56607 1 25585 33137 15931 15940 29865 29865 0.09195800616316774 LSHFQFWFF 9 Unmodified _LSHFQFWFF_ 0 0 0 REV__L1M5_dup30692|chrX:16608834-16609320:+|1.00816676553668|0.060764279208019|4.05|150.0|25|1|anti-sense REV__L1M5_dup30692|chrX:16608834-16609320:+|1.00816676553668|0.060764279208019|4.05|150.0|25|1|anti-sense MSMS UPN48_class_I_Rep_1 5 629.8081665039062 2 629.805834 1257.59712 NaN NaN NaN NaN NaN NaN NaN 65.498 1 68.95 68.45 69.45 3.4516 0 0 0 0.39518 1 14905 14905 1.8442 0.19162 1 + 25586 24652 15932 15941 29866 29866 -0.021379604231697158 LSHKWVREVL 10 Unmodified _LSHKWVREVL_ 0 0 0 REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|154|2|anti-sense REV__L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|154|2|anti-sense MSMS UPN47_class_I_Rep_3 4 633.8704223632812 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 87.753 1 91.14 90.64 91.64 3.3873 0 0 0 0.53105 1 21998 21998 1.4819 0 1 + 25587 24934 15933 15942 29867 29867 0.10220760451034039 LSHLVTPAA 9 Unmodified _LSHLVTPAA_ 0 0 0 REV__L1PA5_dup4136|chr5:169819645-169825775:+|8.923553585255526|0.1588433047896963|5.81|151.0|364|3|anti-sense REV__L1PA5_dup4136|chr5:169819645-169825775:+|8.923553585255526|0.1588433047896963|5.81|151.0|364|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 455.2652282714844 2 454.763635 907.512717 -0.40409 -0.00018376 0.37446 0.00017029 -0.029629 -1.3474E-05 454.7636972901015 45.085 1.1672 48.329 48.05 49.217 3.2441 112 75 2 0 0 0 0.41259 1 9455 9455 7.2892 0 1 143870 + 25588 29587 15934 15943 29868 29868 0.055260887600866226 LSHSMKKL 8 Unmodified _LSHSMKKL_ 0 0 0 REV__ENST00000264995.7_1_3:131220431-131221595:-|nuORF REV__ENST00000264995.7_1_3:131220431-131221595:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.2728271484375 2 472.273312 942.532072 -0.30793 -0.00014543 -0.52631 -0.00024856 -0.83424 -0.00039399 472.2728836933115 14.492 0.63289 17.879 17.723 18.356 3.3871 178 76 4 0 0 0 0.82752 1 561 561 38.176 0.20157 1 292700 + 25589 21588 15935 15944 29869 29869 0.05850721779336254 LSHSMKKL 8 Unmodified _LSHSMKKL_ 0 0 0 REV__ENST00000264995.7_1_3:131220431-131221595:-|nuORF REV__ENST00000264995.7_1_3:131220431-131221595:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 472.2726135253906 2 472.273312 942.532072 -0.8624 -0.00040729 -0.017059 -8.0567E-06 -0.87945 -0.00041534 472.2731317747344 14.52 0.68374 17.889 17.742 18.426 3.3697 173 83 4 0 0 0 0.82752 1 611 611 11.495 1.4208 1 221410 + 25590 21588 15935 15944 29870 29870 0.05850721779336254 LSHSPLPAHLQ 11 Unmodified _LSHSPLPAHLQ_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;ENST00000609762.1_1_7:138978594-138982579:+|nuORF ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS UPN48_class_I_Rep_3 7 600.3302001953125 2 600.330205 1198.64586 0.45371 0.00027238 0.26087 0.00015661 0.71458 0.00042899 600.330116429307 43.344 0.85986 46.982 46.632 47.492 3.6385 136 64 3 0 0 0 0.26266 1 8011 8011 19.362 0.98885 1 297620 25591 3775 15936 15945 29871 29871 0.054479081459248846 LSHVPGFIY 9 Unmodified _LSHVPGFIY_ 0 0 0 REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|115|2|anti-sense REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.778564453125 2 516.779285 1031.54402 NaN NaN NaN NaN NaN NaN NaN 40.971 1 44.337 43.837 44.837 3.3655 0 0 0 0.36505 1 8211 8211 7.2892 0.56607 1 + 25592 23300 15937 15946 29872 29872 0.029506617941933655 LSHWRPKH 8 Unmodified _LSHWRPKH_ 0 0 0 REV__Tigger3a_dup4826|chr17:64472523-64472796:+|2.0582386543552333|0.2904120387640126|2.83|151.0|18|2|anti-sense REV__Tigger3a_dup4826|chr17:64472523-64472796:+|2.0582386543552333|0.2904120387640126|2.83|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.79296875 2 530.793592 1059.57263 NaN NaN NaN NaN NaN NaN NaN 39.151 1 42.881 42.381 43.381 3.7297 0 0 0 0.40643 1 6913 6913 2.0598 0 1 + 25593 32719 15938 15947 29873 29873 0.045228242139728536 LSHWWWWW 8 Unmodified _LSHWWWWW_ 0 0 0 REV__L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|135|3|anti-sense REV__L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|135|3|anti-sense MSMS UPN48_class_I_Rep_3 7 643.7957763671875 2 643.798343 1285.58213 NaN NaN NaN NaN NaN NaN NaN 25.154 1 28.923 28.423 29.423 3.769 0 0 0 0.40738 1 3018 3018 0.79363 0.19213 1 + 25594 24261 15939 15948 29874 29874 -0.04923407500496069 LSIEKPLHFII 11 Unmodified _LSIEKPLHFII_ 0 0 0 REV__L1MEg_dup2084|chr2:159787237-159787834:-|1.2355833266108889|0.1163553804129722|3.41|151.0|37|3|anti-sense REV__L1MEg_dup2084|chr2:159787237-159787834:-|1.2355833266108889|0.1163553804129722|3.41|151.0|37|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 437.6019592285156 3 437.267463 1308.78056 -0.28693 -0.00012546 0.97925 0.00042819 0.69232 0.00030273 437.6023019382814 51.58 0.40761 54.796 54.615 55.023 3.2163 41 22 3 0 0 0 0.68024 1 11477 11477 0.50596 0 1 122940 + 25595 28736 15940 15949 29875 29875 0.1385196856786024 LSIEQEEYN 9 Unmodified _LSIEQEEYN_ 0 0 0 REV__ENSG00000243244|ENST00000404752|STON1 REV__ENSG00000243244|ENST00000404752|STON1 MULTI-MSMS UPN47_class_I_Rep_2 3 562.7586669921875 2 562.758943 1123.50333 0.046369 2.6095E-05 0.061876 3.4821E-05 0.10824 6.0916E-05 562.7588546100487 30.485 0.68497 33.967 33.767 34.452 3.4821 99 55 3 0 0 0 0.39745 1 5041 5041 8.1555 0.8663 1 128210 + 25596 17781 15941 15950 29876 29876 -0.05347769106742817 LSIFTISAEI 10 Unmodified _LSIFTISAEI_ 0 0 0 L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|108|3|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|108|3|anti-sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|108|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.812744140625 2 547.310615 1092.60668 0.35568 0.00019467 0.40892 0.00022381 0.7646 0.00041847 547.3106871831824 57.489 0.41751 60.657 60.319 60.737 3.1681 57 34 2 0 0 0 0.48573 1 13311 13311 13.042 0 1 209210 25597 9180 15942 15951 29877 29877 0.06407763071729278 LSIGALVIYFI 11 Unmodified _LSIGALVIYFI_ 0 0 0 nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 MSMS UPN47_class_I_Rep_1 2 604.8695678710938 2 604.8681 1207.72165 NaN NaN NaN NaN NaN NaN NaN 96.613 1 100.39 99.889 100.89 3.7767 0 0 0 0.38417 1 23950 23950 3.2813 0 1 25598 3720 15943 15952 29878 29878 0.12609492273509204 LSIGIREL 8 Unmodified _LSIGIREL_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|172|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|172|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|172|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 450.779052734375 2 450.779285 899.544017 -0.28801 -0.00012983 0.11219 5.0574E-05 -0.17582 -7.9254E-05 450.77922538542845 48.264 0.83508 51.504 51.164 51.999 3.2405 97 47 3 0 0 0 0.82752 1 10424 10424 15.847 0 1 306650 25599 8291 15944 15953 29879 29879 0.09022661794188025 LSIGNGYPVF 10 Unmodified _LSIGNGYPVF_ 0 0 0 L1MA4_dup8884|chr16:17462817-17464208:+|4.414123301084334|0.0888229950730087|5.64|151.0|80|2|anti-sense L1MA4_dup8884|chr16:17462817-17464208:+|4.414123301084334|0.0888229950730087|5.64|151.0|80|2|anti-sense L1MA4_dup8884|chr16:17462817-17464208:+|4.414123301084334|0.0888229950730087|5.64|151.0|80|2|anti-sense MSMS UPN46_class_I_Rep_3 1 533.781982421875 2 533.782025 1065.5495 NaN NaN NaN NaN NaN NaN NaN 77.236 1 77.236 76.736 77.736 0 0 0 0 0.53105 1 18047 18047 5.7319 0.43497 1 25600 9739 15945 15954 29880 29880 0.019343405859899576 LSIGTAPYNI 10 Unmodified _LSIGTAPYNI_ 0 0 0 REV__MSTA_dup3269|chr3:71083070-71083467:+|1.303239965205952|0.0121305339577242|6.75|151.0|5|1|sense REV__MSTA_dup3269|chr3:71083070-71083467:+|1.303239965205952|0.0121305339577242|6.75|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 525.3636474609375 2 524.787307 1047.56006 0.36193 0.00018993 -0.23381 -0.0001227 0.12812 6.7234E-05 525.2887483838514 75.984 0.29573 79.242 79.151 79.447 3.2573 38 28 2 0 0 0 0.84575 1 18920 18920 8.1555 1.4324 1 88192 + 25601 31848 15946 15955 29881 29881 0.038183232404207956 LSIGTAPYNI 10 Unmodified _LSIGTAPYNI_ 0 0 0 REV__MSTA_dup3269|chr3:71083070-71083467:+|1.303239965205952|0.0121305339577242|6.75|151.0|5|1|sense REV__MSTA_dup3269|chr3:71083070-71083467:+|1.303239965205952|0.0121305339577242|6.75|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 524.787307 1047.56006 0.094801 4.975E-05 -0.24877 -0.00013055 -0.15397 -8.0802E-05 524.7872361261229 75.892 0.3325 79.214 79.095 79.427 3.3216 -0.013871 -8.7268E-06 NaN 8.1555 41 32 2 NaN NaN NaN NaN 0 NaN NaN 0 66892 + 25602 31848 15946 15955 0.038183232404207956 LSIHDGLGGF 10 Unmodified _LSIHDGLGGF_ 0 0 0 HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|153|1|anti-sense HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|153|1|anti-sense HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|153|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 508.2637023925781 2 508.263999 1014.51345 0.38676 0.00019658 -0.17361 -8.8238E-05 0.21315 0.00010834 508.2638972558823 60.046 0.50641 63.533 63.336 63.843 3.4868 55 43 2 0 0 0 0.30285 1 13211 13211 32.305 3.8186 1 174560 25603 8162 15947 15956 29882 29882 0.006768834091417375 LSIINQVAV 9 Unmodified _LSIINQVAV_ 0 0 0 L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|1|1|sense L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|1|1|sense L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.7928771972656 2 478.792392 955.570232 -0.18053 -8.6438E-05 -0.30124 -0.00014423 -0.48177 -0.00023067 478.7920464410764 44.41 0.48447 48.105 47.817 48.302 3.6951 51 33 2 0 0 0 0.37599 1 9219 9219 9.3831 0.78985 1 47103 25604 13315 15948 15957 29883 29883 0.09066930965661868 LSIKLVRYI 9 Unmodified _LSIKLVRYI_ 0 0 0 REV__L1ME4c_dup6197|chr12:11831708-11832001:-|3.024310429534717|0.1582377076790498|4.26|151.0|21|1|anti-sense REV__L1ME4c_dup6197|chr12:11831708-11832001:-|3.024310429534717|0.1582377076790498|4.26|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.8604736328125 2 552.860609 1103.70667 0.58056 0.00032097 -0.25154 -0.00013907 0.32902 0.0001819 552.8603887074418 56.463 1.1623 59.965 59.374 60.537 3.5014 195 95 3 0 0 0 0.10568 1 12138 12138 32.786 0 1 864570 + 25605 28320 15949 15958 29884 29884 0.15896045196154773 LSIKPMFH 8 Unmodified _LSIKPMFH_ 0 0 0 REV__nc|ENSG00000155754|Q53TS8-2|C2CD6 REV__nc|ENSG00000155754|Q53TS8-2|C2CD6 MSMS UPN47_class_I_Rep_1 2 486.771728515625 2 486.770406 971.526258 NaN NaN NaN NaN NaN NaN NaN 67.979 1 71.343 70.843 71.843 3.3646 0 0 0 0.3903 1 16382 16382 11.64 0.14559 1 + 25606 19772 15950 15959 29885 29885 0.03935623267682331 LSINDLGRL 9 Unmodified _LSINDLGRL_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|303|3|anti-sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|303|3|anti-sense MSMS UPN46_class_I_Rep_3 1 500.7748107910156 2 500.792924 999.571294 NaN NaN NaN NaN NaN NaN NaN 48.636 1 48.636 48.136 49.136 0 0 0 0 0.29868 1 10151 10151 10.824 0 1 + 25607 23716 15951 15960 29886 29886 0.07149145334562945 LSISRARPQL 10 Unmodified _LSISRARPQL_ 0 0 0 REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF MSMS UPN46_class_I_Rep_3 1 570.8478393554688 2 570.846022 1139.67749 NaN NaN NaN NaN NaN NaN NaN 28.688 1 28.688 28.188 29.188 0 0 0 0 0.53105 1 4440 4440 9.3831 1.2276 1 + 25608 22125 15952 15961 29887 29887 0.11323900899878936 LSITVSRRKI 10 Unmodified _LSITVSRRKI_ 0 0 0 REV__MER65C_dup229|chr5:170263904-170264328:+|1.00307612920423|0.0711540476302778|3.82|151.0|16|1|anti-sense REV__MER65C_dup229|chr5:170263904-170264328:+|1.00307612920423|0.0711540476302778|3.82|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 586.8233642578125 2 586.877322 1171.74009 NaN NaN NaN NaN NaN NaN NaN 106.34 1 106.34 105.84 106.84 0 0 0 0 0.53105 1 25934 25934 1.6526 0 1 + 25609 31528 15953 15962 29888 29888 0.1610904696808575 LSIVWINPF 9 Unmodified _LSIVWINPF_ 0 0 0 L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|32|1|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|32|1|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_3 7 544.8275756835938 2 544.810585 1087.60662 NaN NaN NaN NaN NaN NaN NaN 72.608 1 76.145 75.645 76.645 3.5373 0 0 0 0.38478 1 16934 16934 4.3292 0.38484 1 25610 12376 15954 15963 29889 29889 0.06631807862368078 LSIYKTTF 8 Unmodified _LSIYKTTF_ 0 0 0 REV__MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|15|2|sense REV__MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 486.7711486816406 2 486.773668 971.532783 NaN NaN NaN NaN NaN NaN NaN 68.345 1 71.614 71.114 72.114 3.2696 0 0 0 0.4044 1 16535 16535 4.756 0 1 + 25611 31363 15955 15964 29890 29890 0.04587839700036511 LSIYSVMEW 9 Unmodified _LSIYSVMEW_ 0 0 0 L1PA4_dup9055|chr11:72943968-72946555:+|3.408956655752734|0.0761344233922845|5.48|151.0|88|1|anti-sense L1PA4_dup9055|chr11:72943968-72946555:+|3.408956655752734|0.0761344233922845|5.48|151.0|88|1|anti-sense L1PA4_dup9055|chr11:72943968-72946555:+|3.408956655752734|0.0761344233922845|5.48|151.0|88|1|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2620239257812 2 564.275718 1126.53688 NaN NaN NaN NaN NaN NaN NaN 24.097 1 27.562 27.062 28.062 3.4655 0 0 0 0.39428 1 3140 3140 2.0598 0 1 25612 14401 15956 15965 29891 29891 -0.02132438868557074 LSKAIHYKY 9 Unmodified _LSKAIHYKY_ 0 0 0 REV__L1MD1_dup3260|chr8:60595335-60596119:+|4.497893291527708|0.1210017585318308|5.22|151.0|52|2|anti-sense REV__L1MD1_dup3260|chr8:60595335-60596119:+|4.497893291527708|0.1210017585318308|5.22|151.0|52|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 561.818115234375 2 561.818941 1121.62333 0.44056 0.00024752 -0.11957 -6.7178E-05 0.32099 0.00018034 561.8187392462014 49.277 1.2428 52.801 52.209 53.452 3.5243 218 88 3 0 0 0 0.41259 1 9783 9783 7.2892 0 1 756070 + 25613 27324 15957 15966 29892 29892 0.06738308748322197 LSKEKRQKL 9 Unmodified _LSKEKRQKL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS UPN47_class_I_Rep_1 2 565.3557739257812 2 565.356222 1128.69789 -0.13006 -7.3531E-05 -0.51771 -0.00029269 -0.64778 -0.00036622 565.3558534605731 12.919 0.15297 16.369 16.275 16.428 3.45 16 10 2 0 0 0 0.47763 1 193 193 2.9952 1.151 1 52512 25614 5025 15958 15967 29893 29893 0.13869071559702206 LSKEKRQKL 9 Unmodified _LSKEKRQKL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 565.356222 1128.69789 0.048546 2.7446E-05 -0.86151 -0.00048706 -0.81297 -0.00045962 565.3557223007247 12.959 0.15336 16.347 16.28 16.433 3.388 -0.0064854 -0.00018485 NaN 2.9952 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 50770 25615 5025 15958 15967 0.13869071559702206 LSKEKRQKL 9 Unmodified _LSKEKRQKL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MATCH UPN47_class_I_Rep_3 4 2 565.356222 1128.69789 -0.44168 -0.0002497 -0.59746 -0.00033778 -1.0391 -0.00058748 565.3561427005094 12.971 0.16757 16.345 16.262 16.429 3.3734 -0.0088173 0.00011372 NaN 2.9952 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 27786 25616 5025 15958 15967 0.13869071559702206 LSKFCGVCFH 10 Unmodified _LSKFCGVCFH_ 0 0 0 REV__L1MDa_dup3927|chrX:47993594-47994492:+|1.0548800445401778|0.0603133433042909|4.13|151.0|57|2|anti-sense REV__L1MDa_dup3927|chrX:47993594-47994492:+|1.0548800445401778|0.0603133433042909|4.13|151.0|57|2|anti-sense MSMS UPN48_class_I_Rep_2 6 570.7714233398438 2 570.77008 1139.52561 NaN NaN NaN NaN NaN NaN NaN 43.509 1 47.271 46.771 47.771 3.7617 0 0 0 0.53105 1 8184 8184 1.8442 1.0506 1 + 25617 27523 15959 15968 29894 29894 -0.03857539443697533 LSKFHWHFP 9 Unmodified _LSKFHWHFP_ 0 0 0 L1ME5_dup530|chr2:210140002-210141110:-|1.6325918287616028|0.1845591343127002|3.15|151.0|17|2|sense L1ME5_dup530|chr2:210140002-210141110:-|1.6325918287616028|0.1845591343127002|3.15|151.0|17|2|sense L1ME5_dup530|chr2:210140002-210141110:-|1.6325918287616028|0.1845591343127002|3.15|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 599.8118896484375 2 599.811451 1197.60835 NaN NaN NaN NaN NaN NaN NaN 71.83 1 75.205 74.705 75.705 3.3751 0 0 0 0.38478 1 17537 17537 4.3292 0.73274 1 25618 12973 15960 15969 29895 29895 0.01744861670977116 LSKKKKKKTFL 11 Unmodified _LSKKKKKKTFL_ 0 0 0 REV__HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|18|2|sense REV__HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 450.3074645996094 3 450.30614 1347.89659 NaN NaN NaN NaN NaN NaN NaN 44.01 1 47.648 47.148 48.148 3.6385 0 0 0 0.38417 1 8260 8260 0.094841 0.011491 1 + 25619 23583 15961 15970 29896 29896 0.2365591213854259 LSKKPILSN 9 Unmodified _LSKKPILSN_ 0 0 0 REV__L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|58|3|sense REV__L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|58|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.3130798339844 2 500.313492 998.612431 -0.63539 -0.00031789 0.34287 0.00017154 -0.29252 -0.00014635 500.3133962298177 14.164 0.30319 17.533 17.453 17.756 3.3697 60 35 2 0 0 0 0.24936 1 486 486 17.113 0 1 56251 + 25620 27892 15962 15971 29897 29897 0.11306906374045411 LSKLPTLTW 9 Unmodified _LSKLPTLTW_ 0 0 0 REV__ENSG00000005421|ENST00000222381|PON1 REV__ENSG00000005421|ENST00000222381|PON1 MSMS UPN47_class_I_Rep_1 2 529.813232421875 2 529.815867 1057.61718 NaN NaN NaN NaN NaN NaN NaN 32.688 1 36.401 35.901 36.901 3.7131 0 0 0 0.37476 1 5657 5657 6.7232 0 1 + 25621 17529 15963 15972 29898 29898 0.09067790516792229 LSKNKEQLE 9 Unmodified _LSKNKEQLE_ 0 0 0 REV__ENST00000491507.1_1_3:75790944-75832513:-|nuORF REV__ENST00000491507.1_1_3:75790944-75832513:-|nuORF MSMS UPN47_class_I_Rep_2 3 544.7714233398438 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 20.127 1 23.523 23.023 24.023 3.3963 0 0 0 0.3967 1 2032 2032 1.4819 0 1 + 25622 21296 15964 15973 29899 29899 0.04704806780819126 LSKNLFLT 8 Unmodified _LSKNLFLT_ 0 0 0 REV__L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|17|1|sense REV__L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|17|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 468.2809143066406 2 468.28166 934.548768 0.084796 3.9708E-05 -0.37943 -0.00017768 -0.29463 -0.00013797 468.28137901699824 55.737 0.62739 59.292 58.885 59.512 3.5554 70 42 2 0 0 0 0.82752 1 11838 11838 19.257 0 1 207510 + 25623 27026 15965 15974 29900 29900 0.07887545936932838 LSKPAFFR 8 Unmodified _LSKPAFFR_ 0 0 0 nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A MSMS UPN47_class_I_Rep_1 2 483.28192138671875 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 39.225 1 42.89 42.39 43.39 3.6652 0 0 0 0.40404 1 7647 7647 5.2307 0 1 25624 3455 15966 15975 29901 29901 0.06574385376654845 LSKPAFFR 8 Unmodified _LSKPAFFR_ 0 0 0 nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A nc|ENSG00000146966|Q9ULE3-2|DENND2A MSMS UPN47_class_I_Rep_3 4 483.2804260253906 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 40.036 1 43.273 42.773 43.773 3.2372 0 0 0 0.40604 1 7977 7977 2.5775 0 1 25625 3455 15966 15975 29902 29902 0.06574385376654845 LSKPPRVW 8 Unmodified _LSKPPRVW_ 0 0 0 HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|5|1|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|5|1|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 491.7952575683594 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.929 1 67.387 66.887 67.887 3.4578 0 0 0 0.40625 1 14431 14431 2.3027 0 1 25626 8120 15967 15976 29903 29903 0.08446074267988024 LSKPPWRK 8 Unmodified _LSKPPWRK_ 0 0 0 HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|39|2|sense HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|39|2|sense HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|39|2|sense MSMS UPN48_class_I_Rep_3 7 506.3176574707031 2 506.308544 1010.60253 NaN NaN NaN NaN NaN NaN NaN 49.041 1 52.67 52.17 53.17 3.6291 0 0 0 0.40625 1 9802 9802 2.3027 0 1 25627 8405 15968 15977 29904 29904 0.0976576315931652 LSKRQEVSFGQ 11 Unmodified _LSKRQEVSFGQ_ 0 0 0 L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 639.8434448242188 2 639.843676 1277.6728 0.74488 0.0004766 -0.29193 -0.00018679 0.45294 0.00028981 639.8433700211186 96.234 0.46103 96.234 95.915 96.376 0 95 51 2 0 0 0 0.52578 1 23407 23407 7.1017 1.3699 1 2256200 25628 10057 15969 15978 29905 29905 0.04506971966452511 LSKRQEVSFGQ 11 Unmodified _LSKRQEVSFGQ_ 0 0 0 L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 639.8436889648438 2 639.843676 1277.6728 0.43653 0.00027931 -0.34568 -0.00022118 0.090849 5.8129E-05 639.8434921265505 92.123 0.6048 95.749 95.52 96.125 3.626 402 84 6 0 0 0 0.52578 1 22166 22166 7.1017 1.3699 1 3839500 25629 10057 15969 15978 29906 29906 0.04506971966452511 LSKRQEVSFGQ 11 Unmodified _LSKRQEVSFGQ_ 0 0 0 L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 639.843505859375 2 639.843676 1277.6728 0.49937 0.00031952 -0.14535 -9.3003E-05 0.35401 0.00022651 639.8433539917913 92.154 0.2701 95.917 95.886 96.156 3.7629 103 39 4 0 0 0 0.52578 1 21956 21956 7.1017 0 1 3184800 25630 10057 15969 15978 29907 29907 0.04506971966452511 LSKYRSYVFFE 11 Unmodified _LSKYRSYVFFE_ 0 0 0 REV__L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|56|2|anti-sense REV__L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.5848083496094 3 480.25036 1437.72925 0.097239 4.6699E-05 -0.035797 -1.7192E-05 0.061442 2.9507E-05 480.2503091195008 55.954 0.92715 59.433 59.019 59.946 3.4785 111 52 3 0 0 0 0.64331 1 12723 12723 3.8459 0 1 166460 + 25631 25978 15970 15979 29908 29908 0.027895998031226554 LSKYRSYVFFE 11 Unmodified _LSKYRSYVFFE_ 0 0 0 REV__L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|56|2|anti-sense REV__L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|56|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 480.250244140625 3 480.25036 1437.72925 0.11583 5.5626E-05 -0.15043 -7.2243E-05 -0.034602 -1.6617E-05 480.2502379324631 56.029 0.82404 59.584 59.169 59.993 3.5554 225 67 4 0 0 0 0.56006 2 11957 11957;11995 6.2344 0 1 888370 + 25632 25978 15970 15979 29909;29910 29909 0.027895998031226554 LSLAIPELV 9 Unmodified _LSLAIPELV_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 MSMS UPN47_class_I_Rep_2 3 477.79669189453125 2 477.797143 953.579734 NaN NaN NaN NaN NaN NaN NaN 90.703 1 94.165 93.665 94.665 3.4613 0 0 0 0.38639 1 22489 22489 3.9444 0 1 25633 727 15971 15980 29911 29911 0.10108699251168218 LSLAIYKY 8 Unmodified _LSLAIYKY_ 0 0 0 L1M1_dup2112|chr3:195363648-195364423:+|1.0895551155235277|0.0066803661501162|7.35|150.0|11|2|sense L1M1_dup2112|chr3:195363648-195364423:+|1.0895551155235277|0.0066803661501162|7.35|150.0|11|2|sense L1M1_dup2112|chr3:195363648-195364423:+|1.0895551155235277|0.0066803661501162|7.35|150.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 485.7840270996094 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 68.379 1 71.831 71.331 72.331 3.4517 0 0 0 0.40625 1 15785 15785 2.3027 0 1 25634 8508 15972 15981 29912 29912 0.0675243007968902 LSLAIYKY 8 Unmodified _LSLAIYKY_ 0 0 0 L1M1_dup2112|chr3:195363648-195364423:+|1.0895551155235277|0.0066803661501162|7.35|150.0|11|2|sense L1M1_dup2112|chr3:195363648-195364423:+|1.0895551155235277|0.0066803661501162|7.35|150.0|11|2|sense L1M1_dup2112|chr3:195363648-195364423:+|1.0895551155235277|0.0066803661501162|7.35|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 485.7837219238281 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 68.002 1 71.51 71.01 72.01 3.5083 0 0 0 0.39996 1 15655 15655 7.9102 3.1541 1 25635 8508 15972 15981 29913 29913 0.0675243007968902 LSLALALAP 9 Unmodified _LSLALALAP_ 0 0 0 ENST00000374163.5_1_1:26872488-26873731:+|nuORF ENST00000374163.5_1_1:26872488-26873731:+|nuORF ENST00000374163.5_1_1:26872488-26873731:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 435.25115966796875 2 434.778754 867.542954 0.09337 4.0595E-05 -0.73344 -0.00031889 -0.64007 -0.00027829 434.7799036235163 71.879 0.28128 75.429 75.254 75.535 3.5505 40 30 2 0 0 0 0.12422 1 16783 16783 2.3027 0 1 42303 25636 6426 15973 15982 29914 29914 0.10388447425259528 LSLCYFSYF 9 Unmodified _LSLCYFSYF_ 0 0 0 ENST00000560002.5_1_15:56945693-56945987:-|nuORF ENST00000560002.5_1_15:56945693-56945987:-|nuORF ENST00000560002.5_1_15:56945693-56945987:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 571.763671875 2 571.764986 1141.51542 -0.17464 -9.9855E-05 -0.72862 -0.0004166 -0.90326 -0.00051645 571.7646252272973 30.747 0.56876 34.058 33.744 34.313 3.3116 82 45 2 0 0 0 0.48846 1 5177 5177 1.8442 0 1 101810 25637 7452 15974 15983 29915 29915 -0.049678238972774125 LSLDSSEKL 9 Unmodified _LSLDSSEKL_ 0 0 0 REV__MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense REV__MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.2688903808594 2 496.268947 990.523341 -0.10277 -5.1002E-05 0.23234 0.0001153 0.12957 6.4299E-05 496.26910315810744 45.784 0.51665 49.484 49.242 49.759 3.6999 44 30 2 0 0 0 0.10568 1 9658 9658 32.786 0 1 145770 + 25638 31271 15975 15984 29916 29916 0.027700266238639415 LSLDSSEKL 9 Unmodified _LSLDSSEKL_ 0 0 0 REV__MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense REV__MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 496.268947 990.523341 0.064847 3.2182E-05 -0.062604 -3.1069E-05 0.0022429 1.1131E-06 496.2689316243232 46.348 0.52583 49.592 49.307 49.833 3.2439 0.049813 -0.00021006 NaN 32.786 56 33 2 NaN NaN NaN NaN 0 NaN NaN 0 85170 + 25639 31271 15975 15984 0.027700266238639415 LSLDWKTEI 9 Unmodified _LSLDWKTEI_ 0 0 0 nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B MULTI-SECPEP UPN47_class_I_Rep_1 2 553.2857666015625 2 552.800414 1103.58628 0.42629 0.00023565 -0.58898 -0.00032559 -0.16269 -8.9935E-05 552.7999199226795 61.541 0.2792 64.909 64.763 65.042 3.3681 26 19 2 0 0 0 0.12207 1 14474 14474 5.7319 1.4026 1 60600 25640 16641 15976 15985 29917 29917 0.03862592411906007 LSLEGKPL 8 Unmodified _LSLEGKPL_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS UPN46_class_I_Rep_3 1 428.7604675292969 2 428.760561 855.506569 0.081791 3.5069E-05 -0.23118 -9.9121E-05 -0.14939 -6.4052E-05 428.7603563142498 48.32 0.77367 48.32 47.951 48.725 0 179 79 3 0 0 0 0.82752 2 10011 10011;10061 72.968 5.5968 1 3440400 25641 3684 15977 15986 29918;29919 29918 0.07303570528563341 LSLELKSVA 9 Unmodified _LSLELKSVA_ 0 0 0 REV__nc|ENSG00000143322|P42684-5|ABL2 REV__nc|ENSG00000143322|P42684-5|ABL2 MULTI-MSMS UPN47_class_I_Rep_1 2 480.2920837402344 2 480.292225 958.569897 0.1527 7.3341E-05 -0.096306 -4.6255E-05 0.056395 2.7086E-05 480.2920066335922 59.317 0.77223 62.734 62.514 63.286 3.4171 88 52 2 0 0 0 0.15547 2 13802 13764;13802 24.991 0 1 205300 + 25642 19437 15978 15987 29920;29921 29921 0.0889551124580521 LSLELKSVA 9 Unmodified _LSLELKSVA_ 0 0 0 REV__nc|ENSG00000143322|P42684-5|ABL2 REV__nc|ENSG00000143322|P42684-5|ABL2 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2922668457031 2 480.292225 958.569897 0.23416 0.00011247 -0.31994 -0.00015367 -0.085781 -4.12E-05 480.29199239320513 59.605 0.76376 62.878 62.581 63.345 3.2731 82 47 2 0 0 0 0.14216 2 13916 13878;13916 26.268 0 1 317240 + 25643 19437 15978 15987 29922;29923 29923 0.0889551124580521 LSLENKNGIA 10 Unmodified _LSLENKNGIA_ 0 0 0 ENST00000518683.5_1_8:87393755-87423767:+|nuORF;ENST00000466609.1_1_3:98376945-98377662:+|nuORF;ENSG00000123124|ENST00000517970|WWP1 ENST00000518683.5_1_8:87393755-87423767:+|nuORF ENST00000518683.5_1_8:87393755-87423767:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 529.80810546875 2 529.795663 1057.57677 0.30547 0.00016184 3.404 0.0018034 3.7094 0.0019652 529.7978347919673 68.239 0.049438 71.604 71.577 71.626 3.3646 5 3 2 0 0 0 0.41718 1 16461 16461 18.146 0 1 22794 25644 2408 15979 15988 29924 29924 0.05028824126384279 LSLENKNGIA 10 Unmodified _LSLENKNGIA_ 0 0 0 ENST00000518683.5_1_8:87393755-87423767:+|nuORF;ENST00000466609.1_1_3:98376945-98377662:+|nuORF;ENSG00000123124|ENST00000517970|WWP1 ENST00000518683.5_1_8:87393755-87423767:+|nuORF ENST00000518683.5_1_8:87393755-87423767:+|nuORF MSMS UPN47_class_I_Rep_1 2 529.8078002929688 2 529.795663 1057.57677 NaN NaN NaN NaN NaN NaN NaN 68.49 1 71.854 71.354 72.354 3.3646 0 0 0 0.53105 1 16538 16538 21.537 3.3906 1 25645 2408 15979 15988 29925 29925 0.05028824126384279 LSLENSLYI 9 Unmodified _LSLENSLYI_ 0 0 0 L1MD2_dup667|chr2:26048032-26048606:-|1.3582266087911217|0.0129359305713885|6.71|151.0|43|3|anti-sense;L1MC3_dup11181|chr16:1645836-1646988:-|2.5906914945460287|0.253195648370472|3.36|151.0|45|2|anti-sense L1MD2_dup667|chr2:26048032-26048606:-|1.3582266087911217|0.0129359305713885|6.71|151.0|43|3|anti-sense L1MD2_dup667|chr2:26048032-26048606:-|1.3582266087911217|0.0129359305713885|6.71|151.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 526.2735595703125 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 59.073 1 59.073 58.573 59.573 0 0 0 0 0.20399 1 13035 13035 16.149 2.2431 1 25646 11300 15980 15989 29926 29926 0.03646903520575506 LSLETPYF 8 Unmodified _LSLETPYF_ 0 0 0 REV__ENST00000371117.7_1_6:51656120-51695745:-|nuORF REV__ENST00000371117.7_1_6:51656120-51695745:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.23712158203125 2 485.250026 968.485499 NaN NaN NaN NaN NaN NaN NaN 31.588 1 34.888 34.388 35.388 3.2991 0 0 0 0.4032 1 5404 5404 6.3541 0.59368 1 + 25647 21957 15981 15990 29927 29927 -4.395709538584924E-06 LSLEVEAAV 9 Unmodified _LSLEVEAAV_ 0 0 0 AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense;AluJb_dup55811|chr8:67210196-67210503:+|2.076376582368753|0.1265123169240493|4.04|151.0|2|1|sense AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense AluJb_dup85785|chr12:104637021-104637332:+|1.113764223669975|0.0109334700778752|6.67|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 465.760498046875 2 465.760758 929.506963 -0.04645 -2.1635E-05 -0.032119 -1.496E-05 -0.078569 -3.6594E-05 465.7605936440001 79.157 0.82408 82.452 82.048 82.872 3.295 160 75 3 0 0 0 0.25207 1 19681 19681 16.942 0 1 413980 25648 75 15982 15991 29928 29928 0.039389454577644756 LSLFNFSSLS 10 Unmodified _LSLFNFSSLS_ 0 0 0 L1M4a1_dup507|chr3:31593239-31593993:-|1.0897366029091815|0.0177536985604169|5.94|151.0|26|1|anti-sense L1M4a1_dup507|chr3:31593239-31593993:-|1.0897366029091815|0.0177536985604169|5.94|151.0|26|1|anti-sense L1M4a1_dup507|chr3:31593239-31593993:-|1.0897366029091815|0.0177536985604169|5.94|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7931518554688 2 557.792589 1113.57063 NaN NaN NaN NaN NaN NaN NaN 50.837 1 54.465 53.965 54.965 3.6285 0 0 0 0.53105 1 11182 11182 5.7319 0 1 25649 8961 15983 15992 29929 29929 0.01838305894852965 LSLFQHCLCSS 11 Unmodified _LSLFQHCLCSS_ 0 0 0 REV__HAL1_dup2574|chr2:68184079-68184529:-|3.21225230758688|0.3086011144522925|3.38|151.0|26|2|anti-sense REV__HAL1_dup2574|chr2:68184079-68184529:-|3.21225230758688|0.3086011144522925|3.38|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_1 2 618.8111572265625 2 619.288834 1236.56311 NaN NaN NaN NaN NaN NaN NaN 62.765 1 66.124 65.624 66.624 3.3595 0 0 0 0.38417 1 14810 14810 4.5289 0 1 + 25650 23412 15984 15993 29930 29930 -0.045704929686962714 LSLGALSQRG 10 Unmodified _LSLGALSQRG_ 0 0 0 L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|206|1|anti-sense;L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|327|3|anti-sense L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|206|1|anti-sense L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|206|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 501.29058837890625 2 501.290548 1000.56654 0.30399 0.00015239 0.12854 6.4434E-05 0.43253 0.00021682 501.2905033323004 76.993 1.5422 80.594 79.952 81.494 3.6016 275 150 2 0 0 0 0.55148 1 18106 18106 5.2969 0 1 454810 25651 13578 15985 15994 29931 29931 0.06628261191815454 LSLGKKNALTY 11 Unmodified _LSLGKKNALTY_ 0 0 0 Charlie4z_dup4409|chr13:50123025-50123138:+|1.1585898522407676|0.0566257914275214|4.35|151.0|8|1|anti-sense Charlie4z_dup4409|chr13:50123025-50123138:+|1.1585898522407676|0.0566257914275214|4.35|151.0|8|1|anti-sense Charlie4z_dup4409|chr13:50123025-50123138:+|1.1585898522407676|0.0566257914275214|4.35|151.0|8|1|anti-sense MSMS UPN47_class_I_Rep_3 4 604.3048095703125 2 604.355888 1206.69722 NaN NaN NaN NaN NaN NaN NaN 58.137 1 61.305 60.805 61.805 3.1681 0 0 0 0.38417 1 13486 13486 1.0715 0.46996 1 25652 528 15986 15995 29932 29932 0.10214232119983535 LSLGPLLLLCR 11 Unmodified _LSLGPLLLLCR_ 0 0 0 REV__MER52D_dup561|chr17:32158873-32160983:+|1.4346169547562082|0.0950329742478751|3.92|151.0|18|2|sense REV__MER52D_dup561|chr17:32158873-32160983:+|1.4346169547562082|0.0950329742478751|3.92|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 599.3726806640625 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 84.351 1 87.917 87.417 88.417 3.5655 0 0 0 0.38417 1 21105 21105 2.9952 1.151 1 + 25653 31436 15987 15996 29933 29933 0.14100357007259845 LSLGRPQGRPP 11 Unmodified _LSLGRPQGRPP_ 0 0 0 LTR16C_dup1952|chr5:76878385-76878626:+|1.2506883811183396|0.0004861751532908|11.33|148.0|5|2|sense LTR16C_dup1952|chr5:76878385-76878626:+|1.2506883811183396|0.0004861751532908|11.33|148.0|5|2|sense LTR16C_dup1952|chr5:76878385-76878626:+|1.2506883811183396|0.0004861751532908|11.33|148.0|5|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.8453979492188 2 589.343646 1176.67274 0.54493 0.00032115 -0.65789 -0.00038773 -0.11296 -6.6572E-05 589.3430822977663 90.521 0.12009 90.521 90.425 90.545 0 28 13 3 0 0 0 0.65559 1 21834 21834 2.7352 0.23671 1 265780 25654 15575 15988 15997 29934 29934 0.09147016757128767 LSLGSVLHG 9 Unmodified _LSLGSVLHG_ 0 0 0 REV__HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|88|2|sense REV__HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|88|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 442.2572021484375 2 441.75581 881.497067 -0.026452 -1.1685E-05 -0.61817 -0.00027308 -0.64463 -0.00028477 441.75535254382316 107.75 0.10706 111.38 111.3 111.41 3.6313 24 12 3 0 0 0 0.46434 1 25989 25989 4.3292 0 1 1966000 + 25655 23796 15989 15998 29935 29935 0.05157802243036258 LSLGYLIMYM 10 Unmodified _LSLGYLIMYM_ 0 0 0 Tigger4_dup1190|chr14:58361187-58361725:-|1.3321493655660486|0.2307791469173753|2.53|151.0|15|2|sense Tigger4_dup1190|chr14:58361187-58361725:-|1.3321493655660486|0.2307791469173753|2.53|151.0|15|2|sense Tigger4_dup1190|chr14:58361187-58361725:-|1.3321493655660486|0.2307791469173753|2.53|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 401.87750244140625 3 401.876589 1202.60794 NaN NaN NaN NaN NaN NaN NaN 16.97 1 20.493 19.993 20.993 3.5224 0 0 0 0.53105 1 1186 1186 0.77653 0 1 25656 33418 15990 15999 29936 29936 0.014739378446165574 LSLIKLRIFFI 11 Unmodified _LSLIKLRIFFI_ 0 0 0 REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|120|1|anti-sense REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|120|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 454.93829345703125 3 454.967236 1361.87988 0.094087 4.2806E-05 0.67203 0.00030575 0.76612 0.00034856 454.9674922742357 42.958 0.35073 46.718 46.585 46.935 3.7599 44 25 2 0 0 0 22.551 1 8007 8007 0.45452 0.35968 1 112180 + 25657 26628 15991 16000 29937 29937 0.21341411252569742 LSLIKLRIFFI 11 Unmodified _LSLIKLRIFFI_ 0 0 0 REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|120|1|anti-sense REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|120|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 454.967236 1361.87988 0.09127 4.1525E-05 0.34837 0.0001585 0.43964 0.00020002 455.30178114518577 43.163 0.18648 46.801 46.738 46.924 3.6385 0.041545 -0.00034396 NaN 0.45452 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 104420 + 25658 26628 15991 16000 0.21341411252569742 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.30938720703125 3 478.974508 1433.90169 -0.28461 -0.00013632 0.57249 0.00027421 0.28788 0.00013789 478.9745963309215 40.6 0.4292 44.272 43.945 44.374 3.6719 48 32 2 0 0 0 0.68491 2 8029 8029;8086 0.08335 0 1 76334 + 25659 32671 15992 16001 29938;29939 29938 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9744873046875 3 478.974508 1433.90169 0.12789 6.1257E-05 0.22126 0.00010598 0.34916 0.00016724 478.9745379909629 42.182 1.1537 45.69 45.229 46.383 3.5079 231 105 3 0 0 0 0.68491 2 7709 7709;7905 0.08335 0.08335 1 374240 + 25660 32671 15992 16001 29940;29941 29940 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.3093566894531 3 478.974508 1433.90169 0.11972 5.7342E-05 0.38179 0.00018287 0.50151 0.00024021 478.97455034065376 43.984 0.55799 47.498 47.224 47.782 3.5132 68 43 2 0 0 0 0.67462 3 8339 8293;8339;8380 1.0136 1.0136 1 240890 + 25661 32671 15992 16001 29942;29943;29944 29943 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.6428527832031 3 478.974508 1433.90169 0.10581 5.068E-05 0.62154 0.0002977 0.72735 0.00034838 479.3092161003652 49.021 0.7565 52.545 51.986 52.743 3.5239 65 55 2 0 0 0 0.68491 1 9823 9823 0.08335 0 1 144570 + 25662 32671 15992 16001 29945 29945 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9746398925781 3 478.974508 1433.90169 0.22002 0.00010539 0.26719 0.00012798 0.48721 0.00023336 478.9746575963768 57.78 0.30096 61.274 61.044 61.345 3.4942 40 26 2 0 0 0 0.68491 1 12538 12538 0.08335 0 1 131820 + 25663 32671 15992 16001 29946 29946 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 479.3093566894531 3 478.974508 1433.90169 0.11972 5.7342E-05 0.38179 0.00018287 0.50151 0.00024021 478.97455034065376 43.984 0.55799 47.498 47.224 47.782 3.5132 68 43 2 0 0 0 22.551 1 8339 8339 1.0136 1.0136 1 240890 + 25664 32671 15992 16001 29947 29947 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.9745788574219 3 478.974508 1433.90169 0.15768 7.5526E-05 0.25419 0.00012175 0.41187 0.00019727 478.97446951592 43.587 0.74113 47.349 46.777 47.518 3.7617 84 59 2 0 0 0 0.68178 1 8235 8235 0.36667 0.28332 1 110850 + 25665 32671 15992 16001 29948 29948 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.97442626953125 3 478.974508 1433.90169 0.15555 7.4505E-05 0.58705 0.00028118 0.74261 0.00035569 478.97466068987256 43.879 0.29874 47.64 47.499 47.798 3.7617 44 20 4 0 0 0 0.68178 1 8293 8293 0.36667 0.27183 1 416640 + 25666 32671 15992 16001 29949 29949 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.30950927734375 3 478.974508 1433.90169 0.19752 9.4609E-05 0.29271 0.0001402 0.49024 0.00023481 478.97447125035814 50.33 0.35364 54.025 53.746 54.1 3.6946 33 22 2 0 0 0 0.68491 1 10248 10248 0.08335 0 1 139700 + 25667 32671 15992 16001 29950 29950 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.974365234375 3 478.974508 1433.90169 0.33741 0.00016161 0.063846 3.0581E-05 0.40125 0.00019219 479.3087809071028 57.158 0.31635 60.672 60.44 60.757 3.5142 36 27 2 0 0 0 0.68491 1 12337 12337 0.08335 0 1 99166 + 25668 32671 15992 16001 29951 29951 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MSMS UPN48_class_I_Rep_2 6 478.9742126464844 3 478.974508 1433.90169 NaN NaN NaN NaN NaN NaN NaN 78.989 1 82.622 82.122 83.122 3.6331 0 0 0 0.38417 1 18749 18749 0.40827 0 1 + 25669 32671 15992 16001 29952 29952 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.974365234375 3 478.974508 1433.90169 0.13447 6.4407E-05 0.054382 2.6048E-05 0.18885 9.0455E-05 478.9744938500093 42.063 0.8802 45.705 45.241 46.121 3.6415 137 86 2 0 0 0 0.68491 1 7751 7751 0.08335 0.08335 1 363270 + 25670 32671 15992 16001 29953 29953 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.30865478515625 3 478.974508 1433.90169 0.13655 6.5403E-05 0.16854 8.0728E-05 0.30509 0.00014613 478.97460399407777 43.578 0.87622 47.217 46.667 47.543 3.6385 113 65 2 0 0 0 0.68178 4 8125 8125;8141;8170;8212 0.36667 0.36667 1 298700 + 25671 32671 15992 16001 29954;29955;29956;29957 29954 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.9744873046875 3 478.974508 1433.90169 0.13779 6.5998E-05 0.27377 0.00013113 0.41156 0.00019713 478.9746321320709 44.139 0.6312 47.778 47.414 48.046 3.6385 73 40 3 0 0 0 0.68178 1 8253 8253 0.36667 0.27183 1 139100 + 25672 32671 15992 16001 29958 29958 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.97515869140625 3 478.974508 1433.90169 0.069866 3.3464E-05 0.40752 0.00019519 0.47738 0.00022865 478.9746858107566 54.035 0.43232 57.605 57.364 57.797 3.5694 43 30 2 0 0 0 0.68491 1 11267 11267 0.08335 0 1 145550 + 25673 32671 15992 16001 29959 29959 0.20209892729508283 LSLKMFKRKRK 11 Unmodified _LSLKMFKRKRK_ 0 0 0 REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense REV__Tigger2_dup340|chr2:68477991-68480160:+|1.3032706227914264|0.0898736258646537|3.86|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.9746398925781 3 478.974508 1433.90169 0.07914 3.7906E-05 0.24822 0.00011889 0.32736 0.0001568 478.97451702073704 54.515 0.41651 58.084 57.797 58.213 3.5694 47 30 2 0 0 0 0.68081 1 11454 11454 0.45452 0.45452 1 118780 + 25674 32671 15992 16001 29960 29960 0.20209892729508283 LSLKVYRII 9 Unmodified _LSLKVYRII_ 0 0 0 REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|5|1|sense REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.8607177734375 2 552.860609 1103.70667 0.58056 0.00032097 -0.25154 -0.00013907 0.32902 0.0001819 552.8603887074418 56.463 1.1623 59.965 59.374 60.537 3.5014 195 95 3 0 0 0 0.074399 1 12054 12054 39.95 3.8227 1 864570 + 25675 30921 15993 16002 29961 29961 0.1589604519617751 LSLKVYRII 9 Unmodified _LSLKVYRII_ 0 0 0 REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|5|1|sense REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.8607177734375 2 552.860609 1103.70667 0.60992 0.0003372 -0.11733 -6.4865E-05 0.4926 0.00027234 552.8604507424893 56.32 0.66668 59.854 59.226 59.892 3.5333 105 49 3 0 0 0 0.17897 1 12002 12002 22.736 1.1993 1 587580 + 25676 30921 15993 16002 29962 29962 0.1589604519617751 LSLKVYRII 9 Unmodified _LSLKVYRII_ 0 0 0 REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|5|1|sense REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.860595703125 2 552.860609 1103.70667 0.28374 0.00015687 -0.024845 -1.3736E-05 0.25889 0.00014313 552.86048260832 56.143 0.57811 59.699 59.613 60.191 3.5554 125 53 3 0 0 0 0.074399 1 11975 11975 39.95 3.8227 1 662650 + 25677 30921 15993 16002 29963 29963 0.1589604519617751 LSLLSHTLV 9 Unmodified _LSLLSHTLV_ 0 0 0 REV__L1M5_dup44196|chr14:103442586-103443181:+|1.4083784154879329|0.0286638540472698|5.62|151.0|27|1|anti-sense REV__L1M5_dup44196|chr14:103442586-103443181:+|1.4083784154879329|0.0286638540472698|5.62|151.0|27|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.80145263671875 2 491.800217 981.585882 0.29692 0.00014603 -0.096828 -4.762E-05 0.20009 9.8406E-05 491.8002039840416 67.509 0.6881 71.016 70.746 71.434 3.5077 103 61 3 0 0 0 0.18929 1 15369 15369 21.747 1.293 1 469900 + 25678 24678 15994 16003 29964 29964 0.09435217482712233 LSLLYFPPHWH 11 Unmodified _LSLLYFPPHWH_ 0 0 0 REV__L1MB4_dup1814|chr3:149926990-149927982:-|1.1245222748245978|0.1047415287519248|3.42|151.0|43|1|anti-sense REV__L1MB4_dup1814|chr3:149926990-149927982:-|1.1245222748245978|0.1047415287519248|3.42|151.0|43|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 470.58428955078125 3 470.583674 1408.72919 0.10219 4.8088E-05 0.93233 0.00043874 1.0345 0.00048683 470.58406797943337 41.091 0.64864 44.597 44.294 44.942 3.506 117 55 3 0 0 0 0.65439 1 7403 7403 2.8433 2.8433 1 240710 + 25679 25944 15995 16004 29965 29965 0.04117644593793557 LSLMCYRTK 9 Unmodified _LSLMCYRTK_ 0 0 0 REV__L1PA15_dup5874|chr10:87451616-87452166:+|1.2343070411986587|0.2548608274667693|2.28|147.0|10|2|sense REV__L1PA15_dup5874|chr10:87451616-87452166:+|1.2343070411986587|0.2548608274667693|2.28|147.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 557.7940063476562 2 557.791012 1113.56747 NaN NaN NaN NaN NaN NaN NaN 51.748 1 54.954 54.454 55.454 3.2055 0 0 0 0.37891 1 11542 11542 5.7319 2.9967 1 + 25680 29257 15996 16005 29966 29966 0.015230162448233386 LSLMLPLML 9 Unmodified _LSLMLPLML_ 0 0 0 REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 515.8053588867188 2 515.805599 1029.59665 0.31065 0.00016023 0.49871 0.00025724 0.80936 0.00041747 515.8058391983161 67.771 0.98067 71.222 70.743 71.723 3.4517 174 75 3 0 0 0 0.23311 1 15526 15526 18.135 3.2967 1 757160 + 25681 19191 15997 16006 29967 29967 0.08303160541117904 LSLMLPLML 9 Unmodified _LSLMLPLML_ 0 0 0 REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF MSMS UPN48_class_I_Rep_2 6 515.80517578125 2 515.805599 1029.59665 NaN NaN NaN NaN NaN NaN NaN 68.092 1 71.601 71.101 72.101 3.5083 0 0 0 0.26661 1 15682 15682 12.532 0 1 + 25682 19191 15997 16006 29968 29968 0.08303160541117904 LSLPQQAVK 9 Unmodified _LSLPQQAVK_ 0 0 0 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MULTI-MSMS UPN48_class_I_Rep_3 7 492.29754638671875 2 492.297842 982.581131 0.15994 7.8736E-05 -0.30029 -0.00014783 -0.14035 -6.9095E-05 492.2977196135457 42.481 0.41855 46.122 45.791 46.21 3.6415 46 36 2 0 0 0 0.41259 1 7772 7772 7.2892 0.56607 1 100560 + 25683 20297 15998 16007 29969 29969 0.08914333339942004 LSLPQQAVK 9 Unmodified _LSLPQQAVK_ 0 0 0 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 492.297842 982.581131 0.17596 8.6625E-05 -0.84351 -0.00041526 -0.66755 -0.00032863 492.297890773897 42.484 0.52006 45.991 45.783 46.303 3.5079 0.0079832 -0.00032241 NaN 7.2892 65 44 2 NaN NaN NaN NaN 0 NaN NaN 0 88997 + 25684 20297 15998 16007 0.08914333339942004 LSLPVEHTLC 10 Unmodified _LSLPVEHTLC_ 0 0 0 REV__ENST00000490199.2_1_9:35841173-35846157:+|nuORF REV__ENST00000490199.2_1_9:35841173-35846157:+|nuORF MSMS UPN47_class_I_Rep_3 4 556.2646484375 2 556.294442 1110.57433 NaN NaN NaN NaN NaN NaN NaN 87.079 1 90.459 89.959 90.959 3.3801 0 0 0 0.53105 1 21821 21821 1.4819 0.15237 1 + 25685 19213 15999 16008 29970 29970 0.02346652397068283 LSLRPAKP 8 Unmodified _LSLRPAKP_ 0 0 0 REV__LTR6B_dup69|chr8:8138446-8138890:+|1.103564604554502|0.1191653340093821|3.21|151.0|7|2|sense REV__LTR6B_dup69|chr8:8138446-8138890:+|1.103564604554502|0.1191653340093821|3.21|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 441.2973327636719 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 69.125 1 72.58 72.08 73.08 3.4548 0 0 0 0.40501 1 16012 16012 3.9444 0 1 + 25686 30995 16000 16009 29971 29971 0.10438385376653514 LSLRWHKRR 9 Unmodified _LSLRWHKRR_ 0 0 0 REV__L1M5_dup2413|chr1:156219231-156219340:-|1.180821861959687|0.0562530566508607|4.39|151.0|3|3|sense REV__L1M5_dup2413|chr1:156219231-156219340:-|1.180821861959687|0.0562530566508607|4.39|151.0|3|3|sense MSMS UPN48_class_I_Rep_2 6 626.3800659179688 2 626.380897 1250.74724 NaN NaN NaN NaN NaN NaN NaN 98.944 1 102.71 102.21 103.21 3.7707 0 0 0 0.4007 1 23503 23503 0.52476 0 1 + 25687 24642 16001 16010 29972 29972 0.13189824359142222 LSLSATHTW 9 Unmodified _LSLSATHTW_ 0 0 0 PRIMA41-int_dup437|chr22:23915886-23916338:+|1.0202996891094072|0.1453577055753354|2.81|127.0|16|1|anti-sense PRIMA41-int_dup437|chr22:23915886-23916338:+|1.0202996891094072|0.1453577055753354|2.81|127.0|16|1|anti-sense PRIMA41-int_dup437|chr22:23915886-23916338:+|1.0202996891094072|0.1453577055753354|2.81|127.0|16|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.2642822265625 2 508.263999 1014.51345 0.37859 0.00019242 -0.21331 -0.00010842 0.16528 8.4007E-05 508.26389675899117 60.135 0.49585 63.609 63.382 63.878 3.4737 51 35 2 0 0 0 0.18929 1 13294 13294 21.747 21.747 1 86331 25688 16898 16002 16011 29973 29973 0.006768834091303688 LSLSATHTW 9 Unmodified _LSLSATHTW_ 0 0 0 PRIMA41-int_dup437|chr22:23915886-23916338:+|1.0202996891094072|0.1453577055753354|2.81|127.0|16|1|anti-sense PRIMA41-int_dup437|chr22:23915886-23916338:+|1.0202996891094072|0.1453577055753354|2.81|127.0|16|1|anti-sense PRIMA41-int_dup437|chr22:23915886-23916338:+|1.0202996891094072|0.1453577055753354|2.81|127.0|16|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 508.263999 1014.51345 0.25351 0.00012885 -0.08032 -4.0824E-05 0.17319 8.8024E-05 508.26397911118903 59.896 0.63091 63.413 63.12 63.751 3.5169 -0.10525 8.5314E-05 NaN 21.747 68 53 2 NaN NaN NaN NaN 0 NaN NaN 0 132520 25689 16898 16002 16011 0.006768834091303688 LSLSILVTH 9 Unmodified _LSLSILVTH_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|7|1|sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.7987060546875 2 491.800217 981.585882 0.22207 0.00010921 0.062808 3.0889E-05 0.28488 0.0001401 491.8001972909186 67.771 0.53825 71.222 70.957 71.495 3.4517 55 38 2 0 0 0 0.20276 1 15540 15540 20.454 0 1 391950 + 25690 23286 16003 16012 29974 29974 0.09435217482723601 LSLSILVTH 9 Unmodified _LSLSILVTH_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|7|1|sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.8013610839844 2 491.800217 981.585882 0.2777 0.00013657 -0.37064 -0.00018228 -0.09294 -4.5708E-05 491.8004060809496 67.827 0.30513 71.323 71.246 71.552 3.4964 36 24 2 0 0 0 0.20276 1 15639 15639 20.454 0 1 280040 + 25691 23286 16003 16012 29975 29975 0.09435217482723601 LSLSLHLLS 9 Unmodified _LSLSLHLLS_ 0 0 0 REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 492.30218505859375 2 491.800217 981.585882 0.27967 0.00013754 0.36027 0.00017718 0.63993 0.00031472 491.80035192346185 67.669 0.44624 71.166 70.84 71.286 3.4964 71 40 2 0 0 0 0.1249 1 15498 15498 29.082 1.4528 1 433590 + 25692 23557 16004 16013 29976 29976 0.09435217482723601 LSLSLHLLS 9 Unmodified _LSLSLHLLS_ 0 0 0 REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.8002014160156 2 491.800217 981.585882 0.29692 0.00014603 -0.096828 -4.762E-05 0.20009 9.8406E-05 491.8002039840416 67.509 0.6881 71.016 70.746 71.434 3.5077 103 61 3 0 0 0 0.047711 1 15448 15448 49.933 2.1843 1 469900 + 25693 23557 16004 16013 29977 29977 0.09435217482723601 LSLSLLHLS 9 Unmodified _LSLSLLHLS_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|242|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.80084228515625 2 491.800217 981.585882 0.22207 0.00010921 0.062808 3.0889E-05 0.28488 0.0001401 491.8001972909186 67.771 0.53825 71.222 70.957 71.495 3.4517 55 38 2 0 0 0 0.11683 1 15591 15591 30.637 0 1 391950 25694 8013 16005 16014 29978 29978 0.09435217482723601 LSLVGTWRVF 10 Unmodified _LSLVGTWRVF_ 0 0 0 LTR12C_dup850|chr5:10374977-10376523:+|2.5035124376535647|0.1876560272518037|3.74|151.0|12|2|sense;LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|5|1|sense;LTR12C_dup385|chr3:11510875-11512160:-|3.555902751723633|0.0520425189754248|6.09|151.0|21|3|sense;LTR12C_dup306|chr2:168656339-168658003:-|1.4165933692796164|0.0257646492410882|5.78|151.0|3|1|sense;LTR12C_dup2632|chr22:39357358-39358791:+|2.614387829747835|0.0512074134986327|5.67|151.0|26|3|sense;LTR12C_dup2334|chr15:30883574-30885113:+|1.985582684130528|0.0921136575769285|4.43|149.0|3|1|sense;LTR12C_dup1590|chr9:89479488-89480983:-|1.11316707604896|0.040373049518263|4.79|151.0|14|2|sense LTR12C_dup850|chr5:10374977-10376523:+|2.5035124376535647|0.1876560272518037|3.74|151.0|12|2|sense LTR12C_dup850|chr5:10374977-10376523:+|2.5035124376535647|0.1876560272518037|3.74|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 589.3414916992188 2 589.340041 1176.66553 NaN NaN NaN NaN NaN NaN NaN 84.105 1 87.799 87.299 88.299 3.6937 0 0 0 0.53105 1 20012 20012 2.9952 1.151 1 25695 15534 16006 16015 29979 29979 0.0842628415668969 LSLVLRRGRWW 11 Unmodified _LSLVLRRGRWW_ 0 0 0 ENST00000409660.5_1_2:176794918-176802173:-|nuORF ENST00000409660.5_1_2:176794918-176802173:-|nuORF ENST00000409660.5_1_2:176794918-176802173:-|nuORF MSMS UPN47_class_I_Rep_1 2 481.2891845703125 3 481.289484 1440.84662 NaN NaN NaN NaN NaN NaN NaN 15.574 1 19.071 18.571 19.571 3.4968 0 0 0 0.38417 1 850 850 0.094841 0 1 25696 6624 16007 16016 29980 29980 0.1438322225326374 LSLVPGPLG 9 Unmodified _LSLVPGPLG_ 0 0 0 REV__ENST00000460191.1_1_1:94344413-94344836:-|nuORF REV__ENST00000460191.1_1_1:94344413-94344836:-|nuORF MSMS UPN47_class_I_Rep_1 2 426.7643127441406 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 60.043 1 63.442 62.942 63.942 3.3982 0 0 0 0.39428 1 13988 13988 2.0598 0 1 + 25697 22421 16008 16017 29981 29981 0.07995874391201596 LSLVPGPLG 9 Unmodified _LSLVPGPLG_ 0 0 0 REV__ENST00000460191.1_1_1:94344413-94344836:-|nuORF REV__ENST00000460191.1_1_1:94344413-94344836:-|nuORF MSMS UPN47_class_I_Rep_3 4 426.7642517089844 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 60.067 1 63.232 62.732 63.732 3.1651 0 0 0 0.39428 1 14079 14079 2.0598 0 1 + 25698 22421 16008 16017 29982 29982 0.07995874391201596 LSLWKANKA 9 Unmodified _LSLWKANKA_ 0 0 0 L1MB8_dup11119|chr11:76075626-76076223:-|1.668333560880946|0.0289156947897205|5.85|151.0|4|1|sense L1MB8_dup11119|chr11:76075626-76076223:-|1.668333560880946|0.0289156947897205|5.85|151.0|4|1|sense L1MB8_dup11119|chr11:76075626-76076223:-|1.668333560880946|0.0289156947897205|5.85|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.8065795898438 2 515.805834 1029.59712 0.31065 0.00016023 0.044075 2.2734E-05 0.35472 0.00018297 515.8058391983161 67.771 0.98067 71.222 70.743 71.723 3.4517 174 75 3 0 0 0 0.30034 1 15511 15511 13.906 13.906 1 757160 25699 10906 16009 16018 29983 29983 0.08350039576839663 LSLWWLLT 8 Unmodified _LSLWWLLT_ 0 0 0 L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|132|2|anti-sense L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|132|2|anti-sense L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|132|2|anti-sense MSMS UPN48_class_I_Rep_2 6 516.3007202148438 2 516.299853 1030.58515 NaN NaN NaN NaN NaN NaN NaN 68.27 1 71.778 71.278 72.278 3.5083 0 0 0 0.40604 1 15735 15735 2.5775 0 1 25700 14812 16010 16019 29984 29984 0.07108422833653094 LSLYRVKLL 9 Unmodified _LSLYRVKLL_ 0 0 0 REV__L1M4_dup10888|chrX:56754199-56754939:+|2.729427096940767|0.0243591864787971|6.81|151.0|41|2|anti-sense REV__L1M4_dup10888|chrX:56754199-56754939:+|2.729427096940767|0.0243591864787971|6.81|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.8603515625 2 552.860609 1103.70667 0.28374 0.00015687 -0.024845 -1.3736E-05 0.25889 0.00014313 552.86048260832 56.143 0.57811 59.699 59.613 60.191 3.5554 125 53 3 0 0 0 0.1249 1 12064 12064 29.082 0 1 662650 + 25701 24351 16011 16020 29985 29985 0.1589604519617751 LSMDSQITAH 10 Unmodified _LSMDSQITAH_ 0 0 0 ENST00000570269.2_3_3:114045162-114045429:-|nuORF ENST00000570269.2_3_3:114045162-114045429:-|nuORF ENST00000570269.2_3_3:114045162-114045429:-|nuORF MSMS UPN46_class_I_Rep_3 1 551.7801513671875 2 551.763506 1101.51246 NaN NaN NaN NaN NaN NaN NaN 18.489 1 18.489 17.989 18.989 0 0 0 0 0.53105 1 1623 1623 1.4819 0.68827 1 25702 7512 16012 16021 29986 29986 -0.03423699022073379 LSMLQLRP 8 Unmodified _LSMLQLRP_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|370|3|anti-sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|370|3|anti-sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|370|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.78253173828125 2 479.281137 956.547722 0.23099 0.00011071 -0.42201 -0.00020226 -0.19102 -9.155E-05 479.2809631528016 58.271 0.38404 61.758 61.46 61.844 3.487 33 21 2 0 0 0 0.82752 1 12637 12637 7.9102 0 1 81818 25703 14859 16013 16022 29987 29987 0.06771008296391301 LSMLRAALL 9 Unmodified _LSMLRAALL_ 0 0 0 nc|ENSG00000126903|P09131-2|SLC10A3;ENSG00000126903|ENST00000651600|SLC10A3 nc|ENSG00000126903|P09131-2|SLC10A3 nc|ENSG00000126903|P09131-2|SLC10A3 MULTI-SECPEP UPN47_class_I_Rep_2 3 494.7874450683594 2 494.304613 986.594672 -0.12553 -6.2051E-05 -1.3054 -0.00064529 -1.431 -0.00070734 494.30409075449023 13.694 0.30887 17.082 16.886 17.195 3.388 54 37 2 0 0 0 0.12281 1 355 355 4.3292 0 1 36464 25704 2557 16014 16023 29988 29988 0.10083867847515648 LSMRHRKKI 9 Unmodified _LSMRHRKKI_ 0 0 0 HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|1|1|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|1|1|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 585.1544799804688 2 584.858409 1167.70227 NaN NaN NaN NaN NaN NaN NaN 98.887 1 98.887 98.387 99.387 0 0 0 0 0.4007 1 24079 24079 0.52476 0 1 25705 7893 16015 16024 29989 29989 0.12512257501612112 LSMRLILP 8 Unmodified _LSMRLILP_ 0 0 0 REV__HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|46|3|sense REV__HERV35I-int_dup463|chr16:48592253-48593727:+|1.0501603337243102|0.0089523655398164|6.87|151.0|46|3|sense MSMS UPN47_class_I_Rep_3 4 471.79461669921875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 34.512 1 37.776 37.276 38.276 3.2639 0 0 0 0.40604 1 6282 6282 2.5775 0 1 + 25706 23593 16016 16025 29990 29990 0.10008482818830089 LSMYACMH 8 Unmodified _LSMYACMH_ 0 0 0 REV__L1PREC2_dup1066|chr2:240474430-240475233:-|1.9233273599109293|0.2006004708638371|3.26|151.0|42|1|anti-sense REV__L1PREC2_dup1066|chr2:240474430-240475233:-|1.9233273599109293|0.2006004708638371|3.26|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_1 2 478.26910400390625 2 478.195359 954.376165 NaN NaN NaN NaN NaN NaN NaN 115.44 1 119.04 118.54 119.54 3.5943 0 0 0 0.40738 1 28563 28563 0.79363 0 1 + 25707 30682 16017 16026 29991 29991 -0.10284808057951977 LSNELTAIGY 10 Unmodified _LSNELTAIGY_ 0 0 0 REV__L1MD1_dup6376|chr20:3976197-3976803:+|3.20805076379428|0.0170635802831451|7.55|151.0|19|3|sense REV__L1MD1_dup6376|chr20:3976197-3976803:+|3.20805076379428|0.0170635802831451|7.55|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.7818603515625 2 540.782222 1079.54989 0.02148 1.1616E-05 -0.30741 -0.00016624 -0.28593 -0.00015463 540.7817178673848 41.4 0.6209 45.072 44.863 45.484 3.6719 87 45 3 0 0 0 0.36464 2 8361 8302;8361 22.736 4.5899 1 126990 + 25708 27371 16018 16027 29992;29993 29993 0.013297155151803963 LSNELTAIGY 10 Unmodified _LSNELTAIGY_ 0 0 0 REV__L1MD1_dup6376|chr20:3976197-3976803:+|3.20805076379428|0.0170635802831451|7.55|151.0|19|3|sense REV__L1MD1_dup6376|chr20:3976197-3976803:+|3.20805076379428|0.0170635802831451|7.55|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.7820434570312 2 540.782222 1079.54989 0.038726 2.0942E-05 -0.34669 -0.00018749 -0.30797 -0.00016654 540.7820035256827 41.972 0.59908 45.212 44.852 45.451 3.2394 89 49 2 0 0 0 0.36464 2 8533 8533;8572 22.736 4.0704 1 109010 + 25709 27371 16018 16027 29994;29995 29994 0.013297155151803963 LSNKGLITRI 10 Unmodified _LSNKGLITRI_ 0 0 0 L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|90|2|sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|90|2|sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|90|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.8507080078125 2 557.850773 1113.68699 0.2727 0.00015212 -0.060896 -3.3971E-05 0.2118 0.00011815 557.8507355639922 54.791 0.49634 58.36 57.985 58.481 3.5694 55 34 2 0 0 0 0.55949 1 11476 11476 4.1895 4.1895 1 270110 25710 9351 16019 16028 29996 29996 0.1346966918540602 LSNKGWKI 8 Unmodified _LSNKGWKI_ 0 0 0 REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|211|3|sense REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|211|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 473.2799072265625 2 473.279452 944.544351 0.064957 3.0743E-05 0.67156 0.00031783 0.73651 0.00034858 473.27954944981593 52.908 0.86106 56.103 55.803 56.664 3.1948 81 56 2 0 0 0 0.82752 1 11824 11824 6.2058 0.47393 1 202320 + 25711 30454 16020 16029 29997 29997 0.06986081514037323 LSNKQFINK 9 Unmodified _LSNKQFINK_ 0 0 0 L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|12|3|sense L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|12|3|sense L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.3154907226562 2 546.314023 1090.61349 0.46585 0.0002545 -0.49771 -0.00027191 -0.031859 -1.7405E-05 546.3136228628745 39.322 0.85344 42.827 42.51 43.364 3.5048 144 83 2 0 0 0 0.35081 1 6869 6869 10.824 10.824 1 269230 25712 9184 16021 16030 29998 29998 0.07181120742939129 LSNPGINYPW 10 Unmodified _LSNPGINYPW_ 0 0 0 L1M4_dup18604|chr18:21067986-21069314:-|1.293777787642214|0.0132937593172768|6.6|151.0|113|3|anti-sense L1M4_dup18604|chr18:21067986-21069314:-|1.293777787642214|0.0132937593172768|6.6|151.0|113|3|anti-sense L1M4_dup18604|chr18:21067986-21069314:-|1.293777787642214|0.0132937593172768|6.6|151.0|113|3|anti-sense MSMS UPN47_class_I_Rep_3 4 580.7899169921875 2 580.790381 1159.56621 NaN NaN NaN NaN NaN NaN NaN 46.027 1 49.271 48.771 49.771 3.2441 0 0 0 0.53105 1 9808 9808 3.2813 0 1 25713 8876 16022 16031 29999 29999 -0.0071915852806796465 LSNQFRCYM 9 Unmodified _LSNQFRCYM_ 0 0 0 REV__L1MA4A_dup5918|chr20:1484889-1485394:+|1.0876411155348007|0.0479154058391552|4.5|147.0|5|1|sense REV__L1MA4A_dup5918|chr20:1484889-1485394:+|1.0876411155348007|0.0479154058391552|4.5|147.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 581.2617797851562 2 581.262619 1160.51068 NaN NaN NaN NaN NaN NaN NaN 23.736 1 27.087 26.587 27.587 3.3509 0 0 0 0.39518 1 3070 3070 1.8442 0.36234 1 + 25714 25340 16023 16032 30000 30000 -0.0631503131169211 LSNRELLS 8 Unmodified _LSNRELLS_ 0 0 0 REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|363|3|anti-sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|363|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 466.26397705078125 2 466.263999 930.513445 -0.34915 -0.00016279 -0.011841 -5.5211E-06 -0.36099 -0.00016832 466.2639052879132 30.341 1.57 34.086 33.726 35.296 3.7449 244 121 3 0 0 0 0.82752 1 4872 4872 25.399 0 1 1328800 + 25715 27620 16024 16033 30001 30001 0.04540883409140406 LSNRELLS 8 Unmodified _LSNRELLS_ 0 0 0 REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|363|3|anti-sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|363|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 466.2636413574219 2 466.263999 930.513445 -0.37759 -0.00017606 0.015327 7.1463E-06 -0.36226 -0.00016891 466.26392787610143 30.551 1.8412 34.033 33.569 35.41 3.4821 281 148 3 0 0 0 0.82752 3 4953 4953;5149;5192 30.637 0 1 1473700 + 25716 27620 16024 16033 30002;30003;30004 30002 0.04540883409140406 LSNRGRPSP 9 Unmodified _LSNRGRPSP_ 0 0 0 L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|247|1|anti-sense L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|247|1|anti-sense L1PA5_dup1888|chr3:56576407-56582528:-|3.648484102444357|0.2667380455390379|3.77|151.0|247|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 492.27252197265625 2 492.27269 982.530826 -0.34674 -0.00017069 0.38431 0.00018919 0.037569 1.8494E-05 492.272589778215 15.844 0.48538 19.34 19.165 19.65 3.4968 107 59 3 0 0 0 0.47197 1 910 910 3.5965 0 1 54799 25717 14433 16025 16034 30005 30005 0.038862237347984774 LSNSRHGAEE 10 Unmodified _LSNSRHGAEE_ 0 0 0 nc|ENSG00000259956|Q8NDT2-2|RBM15B;ENSG00000259956|ENST00000563281|RBM15B nc|ENSG00000259956|Q8NDT2-2|RBM15B nc|ENSG00000259956|Q8NDT2-2|RBM15B MSMS UPN46_class_I_Rep_3 1 550.258544921875 2 550.259976 1098.5054 NaN NaN NaN NaN NaN NaN NaN 78.894 1 78.894 78.394 79.394 0 0 0 0 0.53105 1 18503 18503 1.3295 0.5359 1 25718 5776 16026 16035 30006 30006 -0.0399129557829383 LSNSTSVYCS 10 Unmodified _LSNSTSVYCS_ 0 0 0 REV__L1ME3G_dup7392|chr7:139048911-139049120:-|1.0721776223524235|0.0358184124586435|4.9|151.0|14|2|anti-sense REV__L1ME3G_dup7392|chr7:139048911-139049120:-|1.0721776223524235|0.0358184124586435|4.9|151.0|14|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7344360351562 2 530.734414 1059.45428 NaN NaN NaN NaN NaN NaN NaN 21.077 1 24.725 24.225 25.225 3.648 0 0 0 0.53105 1 1928 1928 1.3295 0.5359 1 + 25719 28205 16027 16036 30007 30007 -0.0730738066736194 LSNVKKFLLGF 11 Unmodified _LSNVKKFLLGF_ 0 0 0 L1ME3Cz_dup10950|chr17:46679877-46681211:+|1.2356687083794995|0.0917935334183837|3.75|151.0|83|2|anti-sense;L1ME3Cz_dup10944|chr17:46462181-46463515:+|1.1776472194453738|0.0801720536228007|3.88|151.0|84|2|anti-sense L1ME3Cz_dup10950|chr17:46679877-46681211:+|1.2356687083794995|0.0917935334183837|3.75|151.0|83|2|anti-sense L1ME3Cz_dup10950|chr17:46679877-46681211:+|1.2356687083794995|0.0917935334183837|3.75|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 422.5923767089844 3 422.592058 1264.75434 0.12294 5.1953E-05 1.1313 0.00047807 1.2542 0.00053003 422.5924497333667 63.681 0.39148 67.155 67.027 67.418 3.4743 54 28 3 0 0 0 0.67462 1 14345 14345 1.0136 0.31591 1 337310 25720 12760 16028 16037 30008 30008 0.13255699396358978 LSPARRRQ 8 Unmodified _LSPARRRQ_ 0 0 0 nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2 nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-4|CLCN2 MULTI-MSMS UPN48_class_I_Rep_2 6 492.2978820800781 2 492.296499 982.578445 0.20426 0.00010055 1.8178 0.00089487 2.022 0.00099543 492.29767691156434 42.079 0.32087 45.837 45.591 45.912 3.7579 38 32 2 0 0 0 0.82752 1 7766 7766 5.2307 0 1 66980 25721 2095 16029 16038 30009 30009 0.08645922725656874 LSPASGKKGR 10 Unmodified _LSPASGKKGR_ 0 0 0 MER4E_dup92|chr2:240535050-240535780:-|1.5199870202914836|0.1501349499902712|3.34|151.0|48|3|anti-sense MER4E_dup92|chr2:240535050-240535780:-|1.5199870202914836|0.1501349499902712|3.34|151.0|48|3|anti-sense MER4E_dup92|chr2:240535050-240535780:-|1.5199870202914836|0.1501349499902712|3.34|151.0|48|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 500.7986145019531 2 500.79854 999.582528 0.32339 0.00016195 -1.2355 -0.00061875 -0.91214 -0.0004568 500.797720103935 85.458 0.24644 88.891 88.765 89.011 3.4329 38 31 2 0 0 0 0.54078 1 21264 21264 6.7232 1.4925 1 120900 25722 16043 16030 16039 30010 30010 0.08271967428720473 LSPASLTTCMT 11 Unmodified _LSPASLTTCMT_ 0 0 0 L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|89|3|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|89|3|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|89|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.7698974609375 2 562.769942 1123.52533 0.48864 0.00027499 -0.49784 -0.00028017 -0.0092067 -5.1813E-06 562.7695395153814 69.016 0.33235 72.471 72.316 72.649 3.4548 29 25 2 0 0 0 0.50573 1 16002 16002 7.609 0 1 83195 25723 15208 16031 16040 30011 30011 -0.031490039541949955 LSPCHMII 8 Unmodified _LSPCHMII_ 0 0 0 REV__L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|154|2|anti-sense REV__L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|154|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2347717285156 2 457.235341 912.45613 -0.69262 -0.00031669 -0.40539 -0.00018536 -1.098 -0.00050205 457.2350616076817 36.566 0.88099 39.813 39.466 40.347 3.247 146 60 4 0 0 0 0.82752 2 6890 6890;6931 40.449 6.2612 1 495000 + 25724 26656 16032 16041 30012;30013 30012 -0.0035999839243459064 LSPESFATPD 10 Unmodified _LSPESFATPD_ 0 0 0 REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.2513427734375 2 532.250754 1062.48696 -0.056716 -3.0187E-05 1.0789 0.00057422 1.0221 0.00054404 532.2512999286291 23.968 0.25492 23.968 23.871 24.126 0 35 25 2 0 0 0 0.51565 1 3097 3097 10.074 3.3508 1 38693 + 25725 22605 16033 16042 30014 30014 -0.0417885027286502 LSPESFATPD 10 Unmodified _LSPESFATPD_ 0 0 0 REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF MSMS UPN46_class_I_Rep_3 1 532.2514038085938 2 532.250754 1062.48696 NaN NaN NaN NaN NaN NaN NaN 23.724 1 23.724 23.224 24.224 0 0 0 0 0.53105 1 3020 3020 10.074 3.3508 1 + 25726 22605 16033 16042 30015 30015 -0.0417885027286502 LSPESFATPD 10 Unmodified _LSPESFATPD_ 0 0 0 REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 532.250754 1062.48696 -0.056716 -3.0187E-05 1.0789 0.00057422 1.0221 0.00054404 532.2512999286291 23.968 0.25492 23.968 23.871 24.126 0 0.093528 7.1954E-05 NaN 10.074 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 38693 + 25727 22605 16033 16042 -0.0417885027286502 LSPESFATPD 10 Unmodified _LSPESFATPD_ 0 0 0 REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 532.250754 1062.48696 0.50739 0.00027006 0.52803 0.00028104 1.0354 0.0005511 532.2513513042426 20.131 0.089861 23.781 23.72 23.81 3.6497 -0.093528 -0.00051441 NaN 10.074 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 28414 + 25728 22605 16033 16042 -0.0417885027286502 LSPFDEERK 9 Unmodified _LSPFDEERK_ 0 0 0 REV__ENST00000556764.5_1_14:61201502-61275155:+|nuORF REV__ENST00000556764.5_1_14:61201502-61275155:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.7869262695312 2 560.785296 1119.55604 0.44686 0.00025059 0.20203 0.0001133 0.64889 0.00036389 560.7853562599139 50.228 0.87732 53.571 53.19 54.068 3.3431 85 45 3 0 0 0 0.49026 1 10950 10950 1.6526 0 1 142780 + 25729 17604 16034 16043 30016 30016 0.0010423374669699115 LSPFTRYRS 9 Unmodified _LSPFTRYRS_ 0 0 0 REV__L1ME1_dup24767|chr14:58276374-58276670:+|1.150009474229838|0.0940941887733219|3.61|151.0|17|2|anti-sense REV__L1ME1_dup24767|chr14:58276374-58276670:+|1.150009474229838|0.0940941887733219|3.61|151.0|17|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.8034057617188 2 563.803823 1125.59309 0.47956 0.00027038 -0.0079956 -4.508E-06 0.47156 0.00026587 563.803648333024 35.723 0.5203 39.233 38.91 39.431 3.5101 71 50 2 0 0 0 0.46869 1 5931 5931 3.9444 0 1 116770 + 25730 27698 16035 16044 30017 30017 0.035319500831292316 LSPGLLPGV 9 Unmodified _LSPGLLPGV_ 0 0 0 ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A ENSG00000119522|ENST00000394215|DENND1A ENSG00000119522|ENST00000394215|DENND1A MSMS UPN47_class_I_Rep_1 2 426.76422119140625 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 59.201 1 62.618 62.118 63.118 3.4171 0 0 0 0.39428 1 13729 13729 2.0598 0 1 25731 2282 16036 16045 30018 30018 0.07995874391190227 LSPGLLPGV 9 Unmodified _LSPGLLPGV_ 0 0 0 ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A ENSG00000119522|ENST00000394215|DENND1A ENSG00000119522|ENST00000394215|DENND1A MSMS UPN47_class_I_Rep_1 2 426.7643127441406 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 59.351 1 62.768 62.268 63.268 3.4171 0 0 0 0.39428 1 13775 13775 2.0598 0 1 25732 2282 16036 16045 30019 30019 0.07995874391190227 LSPGLLPGV 9 Unmodified _LSPGLLPGV_ 0 0 0 ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A ENSG00000119522|ENST00000394215|DENND1A ENSG00000119522|ENST00000394215|DENND1A MSMS UPN47_class_I_Rep_3 4 426.7644348144531 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 59.918 1 63.083 62.583 63.583 3.1651 0 0 0 0.39428 1 14033 14033 2.0598 0 1 25733 2282 16036 16045 30020 30020 0.07995874391190227 LSPGLLPGV 9 Unmodified _LSPGLLPGV_ 0 0 0 ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A ENSG00000119522|ENST00000394215|DENND1A ENSG00000119522|ENST00000394215|DENND1A MSMS UPN47_class_I_Rep_3 4 426.7642822265625 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 60.193 1 63.358 62.858 63.858 3.1651 0 0 0 0.39428 1 14118 14118 2.0598 0 1 25734 2282 16036 16045 30021 30021 0.07995874391190227 LSPPMVMEL 9 Unmodified _LSPPMVMEL_ 0 0 0 REV__ENST00000566601.1_1_16:74502729-74503008:-|nuORF REV__ENST00000566601.1_1_16:74502729-74503008:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 508.76141357421875 2 508.761389 1015.50822 0.22607 0.00011502 0.44902 0.00022845 0.6751 0.00034346 508.76160309885614 45.828 0.70232 49.586 49.293 49.995 3.7579 89 50 2 0 0 0 0.40174 1 8968 8968 7.9102 1.187 1 260920 + 25735 23067 16037 16046 30022 30022 0.0010912023066111942 LSPQRSVTV 9 Unmodified _LSPQRSVTV_ 0 0 0 REV__ENSG00000092421|ENST00000343348|SEMA6A REV__ENSG00000092421|ENST00000343348|SEMA6A MULTI-MSMS UPN47_class_I_Rep_1 2 493.7850341796875 2 493.785099 985.555644 0.0083158 4.1062E-06 0.28603 0.00014124 0.29435 0.00014534 493.7852153192675 49.897 0.537 53.526 53.352 53.889 3.6285 48 29 2 0 0 0 0.279 1 10920 10920 15.248 3.0078 1 133280 + 25736 18033 16038 16047 30023 30023 0.06228858817519267 LSPQRSVTV 9 Unmodified _LSPQRSVTV_ 0 0 0 REV__ENSG00000092421|ENST00000343348|SEMA6A REV__ENSG00000092421|ENST00000343348|SEMA6A MULTI-MSMS UPN47_class_I_Rep_3 4 494.2867431640625 2 493.785099 985.555644 0.27152 0.00013407 0.025355 1.252E-05 0.29688 0.00014659 493.7850004417244 50.341 0.51527 53.567 53.348 53.863 3.2262 41 27 2 0 0 0 0.33908 2 11095 11095;11139 11.495 2.7493 1 93542 + 25737 18033 16038 16047 30024;30025 30024 0.06228858817519267 LSPRLALPK 9 Unmodified _LSPRLALPK_ 0 0 0 ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENST00000417736.2_1_18:12308439-12326126:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.27386474609375 2 497.824027 993.633501 NaN NaN NaN NaN NaN NaN NaN 62.249 1 65.617 65.117 66.117 3.3681 0 0 0 0.39428 1 14653 14653 2.0598 0 1 25738 6661 16039 16048 30026 30026 0.1364291647354321 LSPSKKFY 8 Unmodified _LSPSKKFY_ 0 0 0 REV__ENSG00000198924|ENST00000361384|DCLRE1A REV__ENSG00000198924|ENST00000361384|DCLRE1A MSMS UPN47_class_I_Rep_1 2 485.2726745605469 2 485.273835 968.533118 NaN NaN NaN NaN NaN NaN NaN 26.293 1 30.056 29.556 30.556 3.7624 0 0 0 0.40643 1 3742 3742 2.0598 0.21551 1 + 25739 21165 16040 16049 30027 30027 0.04759259419893169 LSPSPQSPLCH 11 Unmodified _LSPSPQSPLCH_ 0 0 0 L1PB1_dup10362|chr12:118286288-118287226:+|2.5761349146785157|0.0193790290845987|7.05|151.0|34|1|anti-sense L1PB1_dup10362|chr12:118286288-118287226:+|2.5761349146785157|0.0193790290845987|7.05|151.0|34|1|anti-sense L1PB1_dup10362|chr12:118286288-118287226:+|2.5761349146785157|0.0193790290845987|7.05|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_1 5 583.287109375 2 583.287148 1164.55974 NaN NaN NaN NaN NaN NaN NaN 28.021 1 31.578 31.078 32.078 3.5571 0 0 0 0.38417 1 3693 3693 0.96228 0.2719 1 25740 14994 16041 16050 30028 30028 -0.015954197510609447 LSPSRYSLV 9 Unmodified _LSPSRYSLV_ 0 0 0 REV__ENST00000393965.7_1_2:74710200-74710284:-|nuORF REV__ENST00000393965.7_1_2:74710200-74710284:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 511.2877197265625 2 511.287474 1020.5604 0.18203 9.3068E-05 -0.037406 -1.9125E-05 0.14462 7.3943E-05 511.2874060193242 59.596 0.82257 62.761 62.516 63.339 3.1651 93 54 2 0 0 0 0.31407 1 13973 13973 13.042 1.5478 1 144640 + 25741 22100 16042 16051 30029 30029 0.05093742960286818 LSPSSWQPPFY 11 Unmodified _LSPSSWQPPFY_ 0 0 0 L1MB2_dup1115|chr2:174631079-174631625:+|1.7853731519156162|0.0489106646884666|5.19|151.0|25|1|anti-sense L1MB2_dup1115|chr2:174631079-174631625:+|1.7853731519156162|0.0489106646884666|5.19|151.0|25|1|anti-sense L1MB2_dup1115|chr2:174631079-174631625:+|1.7853731519156162|0.0489106646884666|5.19|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.8791809082031 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 77.336 1 80.858 80.358 81.358 3.5221 0 0 0 0.38417 1 18399 18399 0.50596 0 1 25742 10200 16043 16052 30030 30030 -0.022866201851002188 LSPSVLNVY 9 Unmodified _LSPSVLNVY_ 0 0 0 HUERS-P2-int_dup97|chr6:15337166-15339538:+|5.584623257950788|0.020075285398235|8.12|151.0|136|3|anti-sense HUERS-P2-int_dup97|chr6:15337166-15339538:+|5.584623257950788|0.020075285398235|8.12|151.0|136|3|anti-sense HUERS-P2-int_dup97|chr6:15337166-15339538:+|5.584623257950788|0.020075285398235|8.12|151.0|136|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.1737365722656 2 496.276575 990.538597 NaN NaN NaN NaN NaN NaN NaN 61.553 1 61.553 61.053 62.053 0 0 0 0 0.35339 1 13706 13706 7.9102 0 1 25743 8442 16044 16053 30031 30031 0.04294938211705812 LSPTFVLWDV 10 Unmodified _LSPTFVLWDV_ 0 0 0 ENSG00000187791|ENST00000340783|FAM205C;nc|ENSG00000187791|A6NFA0|SPATA31F3 ENSG00000187791|ENST00000340783|FAM205C ENSG00000187791|ENST00000340783|FAM205C MULTI-MSMS UPN47_class_I_Rep_2 3 588.8192749023438 2 588.818607 1175.62266 0.045469 2.6773E-05 -0.50818 -0.00029923 -0.46271 -0.00027245 588.8182516836937 36.686 0.93951 40.085 39.618 40.558 3.3988 98 69 2 0 0 0 0.56333 1 6801 6801 1.4819 0.15237 1 135970 25744 5209 16045 16054 30032 30032 0.041874693085901527 LSPVAEWAKLR 11 Unmodified _LSPVAEWAKLR_ 0 0 0 REV__nc|ENSG00000155846|Q86YN6-4|PPARGC1B REV__nc|ENSG00000155846|Q86YN6-4|PPARGC1B MSMS UPN46_class_I_Rep_3 1 635.3696899414062 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 106.28 1 106.28 105.78 106.78 0 0 0 0 0.38417 1 25919 25919 1.1933 0.66858 1 + 25745 32021 16046 16055 30033 30033 0.10049340731143275 LSPVRPIIA 9 Unmodified _LSPVRPIIA_ 0 0 0 REV__ENSG00000152464|ENST00000378197|RPP38 REV__ENSG00000152464|ENST00000378197|RPP38 MSMS UPN47_class_I_Rep_2 3 483.3106994628906 2 483.310752 964.606951 NaN NaN NaN NaN NaN NaN NaN 39.437 1 42.815 42.315 43.315 3.3785 0 0 0 0.38784 1 7745 7745 3.5965 0 1 + 25746 19681 16047 16056 30034 30034 0.12323227582226082 LSPVTLRFV 9 Unmodified _LSPVTLRFV_ 0 0 0 L1M1_dup3326|chr6:37961095-37962486:+|4.395061074051536|0.0288433506045606|7.25|151.0|59|2|anti-sense L1M1_dup3326|chr6:37961095-37962486:+|4.395061074051536|0.0288433506045606|7.25|151.0|59|2|anti-sense L1M1_dup3326|chr6:37961095-37962486:+|4.395061074051536|0.0288433506045606|7.25|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.313232421875 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 91.207 1 94.669 94.169 95.169 3.4613 0 0 0 0.3967 1 22591 22591 1.4819 0.79152 1 25747 8549 16048 16057 30035 30035 0.10343210236646883 LSQFSVLSV 9 Unmodified _LSQFSVLSV_ 0 0 0 MER119_dup41|chr1:88800148-88800674:-|1.4453282144699855|0.0451120640851742|5.0|151.0|36|3|anti-sense MER119_dup41|chr1:88800148-88800674:-|1.4453282144699855|0.0451120640851742|5.0|151.0|36|3|anti-sense MER119_dup41|chr1:88800148-88800674:-|1.4453282144699855|0.0451120640851742|5.0|151.0|36|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 490.7785949707031 2 490.276575 978.538597 0.31424 0.00015406 0.79836 0.00039142 1.1126 0.00054548 490.27651358569886 62.23 0.36098 65.704 65.612 65.973 3.4738 32 27 2 0 0 0 0.12026 1 13949 13949 4.897 0 1 103750 25748 15776 16049 16058 30036 30036 0.04846938211721863 LSQHLSLSI 9 Unmodified _LSQHLSLSI_ 0 0 0 L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.28759765625 2 499.287474 996.560395 0.19488 9.7302E-05 0.25494 0.00012729 0.44982 0.00022459 499.28755040331123 77.43 0.86556 80.858 80.525 81.39 3.4289 126 79 2 0 0 0 0.20317 1 19214 19214 20.415 0 1 453230 25749 10685 16050 16059 30037 30037 0.06197742960296182 LSQHLSLSI 9 Unmodified _LSQHLSLSI_ 0 0 0 L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 499.287474 996.560395 0.19488 9.7302E-05 0.25494 0.00012729 0.44982 0.00022459 499.28755040331123 77.43 0.86556 80.858 80.525 81.39 3.4289 0.059872 4.745E-05 NaN 20.415 126 79 2 NaN NaN NaN NaN 0 NaN NaN 0 453230 25750 10685 16050 16059 0.06197742960296182 LSQHLSLSI 9 Unmodified _LSQHLSLSI_ 0 0 0 L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 499.287474 996.560395 0.26108 0.00013035 0.095098 4.7481E-05 0.35618 0.00017783 499.28745452560423 77.564 0.6976 80.896 80.564 81.261 3.3315 0.097371 -0.00011216 NaN 20.415 155 70 3 NaN NaN NaN NaN 0 NaN NaN 0 271800 25751 10685 16050 16059 0.06197742960296182 LSQHLSLSI 9 Unmodified _LSQHLSLSI_ 0 0 0 L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 499.287474 996.560395 0.25033 0.00012498 0.21567 0.00010768 0.46599 0.00023266 499.28749086481463 77.629 0.65639 80.897 80.613 81.269 3.269 0.098893 8.2325E-06 NaN 20.415 151 70 3 NaN NaN NaN NaN 0 NaN NaN 0 289450 25752 10685 16050 16059 0.06197742960296182 LSQHLSLSI 9 Unmodified _LSQHLSLSI_ 0 0 0 L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense L1MB7_dup11485|chrX:2632730-2633371:-|3.3429744432371886|0.1985732224855641|4.07|151.0|37|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 499.287474 996.560395 0.30085 0.00015021 1.0096 0.0005041 1.3105 0.00065431 499.2879211855914 76.941 0.052788 80.542 80.517 80.57 3.6016 -0.25614 0.00080108 NaN 20.415 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 15844 25753 10685 16050 16059 0.06197742960296182 LSQRFGRP 8 Unmodified _LSQRFGRP_ 0 0 0 AluJr_dup57840|chr12:118153135-118153419:+|1.5683487452509035|0.4500893898393034|1.8|151.0|1|1|sense AluJr_dup57840|chr12:118153135-118153419:+|1.5683487452509035|0.4500893898393034|1.8|151.0|1|1|sense AluJr_dup57840|chr12:118153135-118153419:+|1.5683487452509035|0.4500893898393034|1.8|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 480.77191162109375 2 480.772326 959.530098 0.10798 5.1912E-05 -0.23975 -0.00011526 -0.13177 -6.3352E-05 480.7720852673862 34.543 0.84552 34.543 34.055 34.9 0 92 61 2 0 0 0 0.82752 2 6111 6111;6221 11.64 0.81637 1 153040 25754 163 16051 16060 30038;30039 30038 0.04871429085756063 LSQRITLT 8 Unmodified _LSQRITLT_ 0 0 0 REV__nc|ENSG00000155906|Q9NWS8-3|RMND1 REV__nc|ENSG00000155906|Q9NWS8-3|RMND1 MSMS UPN47_class_I_Rep_1 2 466.26385498046875 2 466.282192 930.549831 NaN NaN NaN NaN NaN NaN NaN 30.606 1 34.351 33.851 34.851 3.7449 0 0 0 0.39242 1 5025 5025 10.824 0 1 + 25755 19778 16052 16061 30040 30040 0.08177760305829906 LSRGALIAI 9 Unmodified _LSRGALIAI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MULTI-MSMS UPN48_class_I_Rep_1 5 457.29510498046875 2 457.295102 912.575651 0.15351 7.02E-05 0.074883 3.4244E-05 0.22839 0.00010444 457.2950347281874 64.057 1.2756 67.515 66.974 68.249 3.4578 213 97 4 0 0 0 0.057664 1 14474 14474 45.7 1.8413 1 1987100 25756 1577 16053 16062 30041 30041 0.11586654548113984 LSRLDFYYKAY 11 Unmodified _LSRLDFYYKAY_ 0 0 0 REV__nc|ENSG00000108100|Q8ND76-3|CCNY REV__nc|ENSG00000108100|Q8ND76-3|CCNY MULTI-MSMS UPN47_class_I_Rep_1 2 480.249267578125 3 480.25036 1437.72925 0.097239 4.6699E-05 -0.035797 -1.7192E-05 0.061442 2.9507E-05 480.2503091195008 55.954 0.92715 59.433 59.019 59.946 3.4785 111 52 3 0 0 0 0.56006 1 12693 12693 6.2344 1.5184 1 166460 + 25757 18372 16054 16063 30042 30042 0.027895998031453928 LSRLDFYYKAY 11 Unmodified _LSRLDFYYKAY_ 0 0 0 REV__nc|ENSG00000108100|Q8ND76-3|CCNY REV__nc|ENSG00000108100|Q8ND76-3|CCNY MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 480.25036 1437.72925 0.25015 0.00012014 -0.21056 -0.00010112 0.039589 1.9013E-05 480.25025284080965 56.232 0.96656 59.532 59.063 60.029 3.3009 0.13054 -0.00014097 NaN 6.2344 129 57 3 NaN NaN NaN NaN 0 NaN NaN 0 203720 + 25758 18372 16054 16063 0.027895998031453928 LSRLDFYYKAY 11 Unmodified _LSRLDFYYKAY_ 0 0 0 REV__nc|ENSG00000108100|Q8ND76-3|CCNY REV__nc|ENSG00000108100|Q8ND76-3|CCNY MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 480.25036 1437.72925 0.038078 1.8287E-05 -0.032096 -1.5414E-05 0.005982 2.8729E-06 480.25029525999446 56.264 0.81988 59.436 59.184 60.004 3.1721 0.033962 0.00011616 NaN 6.2344 91 51 2 NaN NaN NaN NaN 0 NaN NaN 0 145540 + 25759 18372 16054 16063 0.027895998031453928 LSRLLFRIP 9 Unmodified _LSRLLFRIP_ 0 0 0 REV__L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|47|2|anti-sense REV__L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.8585205078125 2 557.858401 1113.70225 0.54284 0.00030283 -0.05183 -2.8914E-05 0.49101 0.00027391 557.8581554080372 62.996 0.26893 66.47 66.399 66.668 3.4738 26 21 2 0 0 0 0.46434 1 14129 14129 4.3292 0 1 72242 + 25760 24018 16055 16064 30043 30043 0.14994580773281996 LSRNYGVP 8 Unmodified _LSRNYGVP_ 0 0 0 REV__GRIN2D|p.S859Pfs*115|1|0.05|ENSG00000105464|chr19:48442283-48442283|G/-|frameshift_variant REV__GRIN2D|p.S859Pfs*115|1|0.05|ENSG00000105464|chr19:48442283-48442283|G/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 453.245361328125 2 453.245609 904.476666 NaN NaN NaN NaN NaN NaN NaN 44.825 1 48.525 48.025 49.025 3.6999 0 0 0 0.40604 1 9357 9357 2.5775 0 1 + 25761 18289 16056 16065 30044 30044 0.02060631583231043 LSRPFKYIL 9 Unmodified _LSRPFKYIL_ 0 0 0 L1MC1_dup485|chr1:110919586-110921453:+|1.5715837984297902|0.0459540420242948|5.1|151.0|126|3|anti-sense L1MC1_dup485|chr1:110919586-110921453:+|1.5715837984297902|0.0459540420242948|5.1|151.0|126|3|anti-sense L1MC1_dup485|chr1:110919586-110921453:+|1.5715837984297902|0.0459540420242948|5.1|151.0|126|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.8428955078125 2 568.844959 1135.67537 0.47972 0.00027289 -3.2649 -0.0018572 -2.7852 -0.0015843 568.8428768489839 74.619 0.10252 78.209 78.14 78.243 3.59 18 9 3 0 0 0 0.23293 1 17560 17560 18.146 0 1 99778 25762 11156 16057 16066 30045 30045 0.11295472162078113 LSRPFLHLLR 10 Unmodified _LSRPFLHLLR_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|254|3|anti-sense;L1PA6_dup4421|chr11:47112841-47116675:-|1.4499233827024811|0.0878008941005539|4.05|151.0|223|3|anti-sense;L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|263|2|anti-sense;L1PA5_dup11024|chr21:6510883-6513512:-|1.0168378985134767|0.0435981032313654|4.54|151.0|136|2|anti-sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|254|3|anti-sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|254|3|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3855590820312 2 626.387857 1250.76116 NaN NaN NaN NaN NaN NaN NaN 105.55 1 109.25 108.75 109.75 3.702 0 0 0 0.53105 1 24907 24907 1.4819 0 1 25763 14423 16058 16067 30046 30046 0.14581057067607617 LSRPGPIVPP 10 Unmodified _LSRPGPIVPP_ 0 0 0 nc|ENSG00000043514|Q9H3H1-6|TRIT1;nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1;ENSG00000043514|ENST00000316891|TRIT1 nc|ENSG00000043514|Q9H3H1-6|TRIT1 nc|ENSG00000043514|Q9H3H1-6|TRIT1 MSMS UPN48_class_I_Rep_1 5 516.8145141601562 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 32.45 1 35.976 35.476 36.476 3.5266 0 0 0 0.53105 1 4937 4937 1.3295 0 1 25764 878 16059 16068 30047 30047 0.09822326093922129 LSRPVLEGL 9 Unmodified _LSRPVLEGL_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20;nc|ENSG00000064703|Q9UHI6-2|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS UPN47_class_I_Rep_2 3 492.3103332519531 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.448 1 60.739 60.239 61.239 3.2912 0 0 0 0.22485 1 13228 13228 14.838 1.7958 1 25765 995 16060 16069 30048 30048 0.08914333339953373 LSRTARTP 8 Unmodified _LSRTARTP_ 0 0 0 REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|124|1|anti-sense REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|124|1|anti-sense MSMS UPN47_class_I_Rep_2 3 451.2637939453125 2 451.264333 900.514114 NaN NaN NaN NaN NaN NaN NaN 26.612 1 30.107 29.607 30.607 3.4945 0 0 0 0.40472 1 3878 3878 4.3292 1.7518 1 + 25766 23639 16061 16070 30049 30049 0.05987722848840349 LSRTARTP 8 Unmodified _LSRTARTP_ 0 0 0 REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|124|1|anti-sense REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|124|1|anti-sense MSMS UPN47_class_I_Rep_2 3 451.26373291015625 2 451.264333 900.514114 NaN NaN NaN NaN NaN NaN NaN 26.749 1 30.245 29.745 30.745 3.4965 0 0 0 0.40643 1 3914 3914 2.0598 0 1 + 25767 23639 16061 16070 30050 30050 0.05987722848840349 LSRTQVTY 8 Unmodified _LSRTQVTY_ 0 0 0 ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000115902|ENST00000234256|SLC1A4 MSMS UPN48_class_I_Rep_1 5 484.2640075683594 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 39.363 1 42.868 42.368 43.368 3.5048 0 0 0 0.39242 1 6941 6941 10.824 0 1 25768 2148 16062 16071 30051 30051 0.028848834091263598 LSRTYSGAL 9 Unmodified _LSRTYSGAL_ 0 0 0 LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|23|1|anti-sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|23|1|anti-sense LTR85c_dup103|chr2:42980429-42980958:+|1.520488338464943|0.0268622220447514|5.82|146.0|23|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.2637939453125 2 484.263999 966.513445 0.171 8.2809E-05 -0.063544 -3.0772E-05 0.10746 5.2037E-05 484.26388891332664 43.693 1.2798 47.454 47.052 48.332 3.7617 245 96 4 0 0 0 0.23293 1 8157 8157 18.146 0 1 1679100 25769 15719 16063 16072 30052 30052 0.028848834091377284 LSRVFMMV 8 Unmodified _LSRVFMMV_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|40|2|anti-sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|40|2|anti-sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.763427734375 2 491.764266 981.513979 0.12809 6.2988E-05 -0.87349 -0.00042955 -0.74541 -0.00036656 491.7638306078558 56.352 0.77319 59.809 59.34 60.113 3.4572 79 43 3 0 0 0 0.82752 1 12759 12759 7.9102 0.62092 1 209470 25770 8684 16064 16073 30053 30053 0.022482635329993172 LSRYLQAF 8 Unmodified _LSRYLQAF_ 0 0 0 REV__nc|ENSG00000124181|P19174|PLCG1 REV__nc|ENSG00000124181|P19174|PLCG1 MSMS UPN48_class_I_Rep_3 7 499.2754821777344 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 54.084 1 57.653 57.153 58.153 3.5694 0 0 0 0.40625 1 11335 11335 2.3027 0.24298 1 + 25771 18797 16065 16074 30054 30054 0.04085777651414446 LSSFDYEQF 9 Unmodified _LSSFDYEQF_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 MSMS UPN48_class_I_Rep_3 7 567.7840576171875 2 568.250754 1134.48696 NaN NaN NaN NaN NaN NaN NaN 51.765 1 55.375 54.875 55.875 3.6105 0 0 0 0.37692 1 10638 10638 6.2058 0.97511 1 25772 5747 16066 16075 30055 30055 -0.07490850272847638 LSSFPVDLHLV 11 Unmodified _LSSFPVDLHLV_ 0 0 0 PABL_A_dup262|chrX:16726001-16726611:-|1.4126643314383491|0.0120584578382328|6.87|151.0|17|2|sense PABL_A_dup262|chrX:16726001-16726611:-|1.4126643314383491|0.0120584578382328|6.87|151.0|17|2|sense PABL_A_dup262|chrX:16726001-16726611:-|1.4126643314383491|0.0120584578382328|6.87|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 613.8430786132812 2 613.842613 1225.67067 NaN NaN NaN NaN NaN NaN NaN 60.832 1 64.345 63.845 64.845 3.5129 0 0 0 0.38417 1 13394 13394 2.7352 0.89096 1 25773 16875 16067 16076 30056 30056 0.06686543228647679 LSSGYMSDIF 10 Unmodified _LSSGYMSDIF_ 0 0 0 Charlie1_dup1609|chr16:3765276-3765656:+|1.250958117902036|0.0293966546378134|5.41|151.0|3|1|sense Charlie1_dup1609|chr16:3765276-3765656:+|1.250958117902036|0.0293966546378134|5.41|151.0|3|1|sense Charlie1_dup1609|chr16:3765276-3765656:+|1.250958117902036|0.0293966546378134|5.41|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.7567138671875 2 560.254982 1118.49541 0.36615 0.00020514 -0.022877 -1.2817E-05 0.34327 0.00019232 560.254898164234 57.434 0.57118 60.602 60.31 60.881 3.1681 71 48 2 0 0 0 0.40227 1 13240 13240 19.257 0 1 126460 25774 431 16068 16077 30057 30057 -0.05909619627891516 LSSHPTRHTH 10 Unmodified _LSSHPTRHTH_ 0 0 0 LTR5A_dup216|chr11:71899369-71900382:+|1.495820273039138|0.0942871651122803|3.99|151.0|36|3|sense LTR5A_dup216|chr11:71899369-71900382:+|1.495820273039138|0.0942871651122803|3.99|151.0|36|3|sense LTR5A_dup216|chr11:71899369-71900382:+|1.495820273039138|0.0942871651122803|3.99|151.0|36|3|sense MSMS UPN48_class_I_Rep_1 5 586.8006591796875 2 586.799603 1171.58465 NaN NaN NaN NaN NaN NaN NaN 68.806 1 72.261 71.761 72.761 3.4548 0 0 0 0.53105 1 15914 15914 3.2813 0 1 25775 15683 16069 16078 30058 30058 0.0057239616651258984 LSSILHSIL 9 Unmodified _LSSILHSIL_ 0 0 0 REV__L1M3_dup4723|chr11:130084546-130085167:+|1.2442204587389598|0.0119163305966704|6.71|151.0|33|2|anti-sense REV__L1M3_dup4723|chr11:130084546-130085167:+|1.2442204587389598|0.0119163305966704|6.71|151.0|33|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.8003234863281 2 491.800217 981.585882 0.27967 0.00013754 0.36027 0.00017718 0.63993 0.00031472 491.80035192346185 67.669 0.44624 71.166 70.84 71.286 3.4964 71 40 2 0 0 0 0.090251 1 15577 15577 36.127 1.7253 1 433590 + 25776 24301 16070 16079 30059 30059 0.09435217482700864 LSSKVPVPF 9 Unmodified _LSSKVPVPF_ 0 0 0 L1MC3_dup4807|chr6:87223909-87225581:-|5.512383589562671|0.1498003744243987|5.2|151.0|97|2|anti-sense L1MC3_dup4807|chr6:87223909-87225581:-|5.512383589562671|0.1498003744243987|5.2|151.0|97|2|anti-sense L1MC3_dup4807|chr6:87223909-87225581:-|5.512383589562671|0.1498003744243987|5.2|151.0|97|2|anti-sense MSMS UPN46_class_I_Rep_3 1 487.1220397949219 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 37.144 1 37.144 36.644 37.644 0 0 0 0 0.39326 1 6954 6954 2.3027 0 1 25777 11345 16071 16080 30060 30060 0.07703832454001258 LSSLDALYIF 10 Unmodified _LSSLDALYIF_ 0 0 0 L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|176|2|anti-sense L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|176|2|anti-sense L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|176|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 571.3113403320312 2 571.310615 1140.60668 0.33025 0.00018868 -0.1355 -7.7412E-05 0.19475 0.00011126 571.310361564866 68.679 0.31363 72.044 71.968 72.281 3.3646 44 26 2 0 0 0 0.51565 1 16578 16578 10.074 0 1 139490 25778 9288 16072 16081 30061 30061 0.04199763071687812 LSSLEGHIY 9 Unmodified _LSSLEGHIY_ 0 0 0 ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|4|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|5|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|2|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|1|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|6|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|7|intron;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|3|intron;ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|9|intron ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|4|intron ENSG00000011426.11,ANLN,chr7,+,I25.1,36439291,36443754|23|7.68|4|intron MULTI-MSMS UPN47_class_I_Rep_3 4 509.763671875 2 509.763832 1017.51311 -0.09852 -5.0222E-05 -0.070349 -3.5862E-05 -0.16887 -8.6084E-05 509.76376712634675 42.344 1.0371 45.584 45.177 46.214 3.2394 174 73 3 0 0 0 0.32219 1 8780 8780 12.532 0 1 418090 25779 775 16073 16082 30062 30062 0.005054636892737108 LSSLHILVT 9 Unmodified _LSSLHILVT_ 0 0 0 L1MA3_dup6464|chr11:73107358-73108551:-|4.898530977415386|0.0227232471721471|7.75|151.0|65|2|anti-sense L1MA3_dup6464|chr11:73107358-73108551:-|4.898530977415386|0.0227232471721471|7.75|151.0|65|2|anti-sense L1MA3_dup6464|chr11:73107358-73108551:-|4.898530977415386|0.0227232471721471|7.75|151.0|65|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.79931640625 2 491.800217 981.585882 0.2777 0.00013657 -0.37064 -0.00018228 -0.09294 -4.5708E-05 491.8004060809496 67.827 0.30513 71.323 71.246 71.552 3.4964 36 24 2 0 0 0 0.35081 1 15628 15628 10.824 0 1 280040 25780 9590 16074 16083 30063 30063 0.09435217482723601 LSSLLHLSL 9 Unmodified _LSSLLHLSL_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_1 5 491.8002014160156 2 491.800217 981.585882 NaN NaN NaN NaN NaN NaN NaN 67.991 1 71.442 70.942 71.942 3.4517 0 0 0 0.029402 1 15670 15670 45.7 0 1 + 25781 26509 16075 16084 30064 30064 0.09435217482700864 LSSLLHLSL 9 Unmodified _LSSLLHLSL_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_1 5 491.8013000488281 2 491.800217 981.585882 NaN NaN NaN NaN NaN NaN NaN 68.124 1 71.576 71.076 72.076 3.4517 0 0 0 0.046227 1 15711 15711 38.176 0 1 + 25782 26509 16075 16084 30065 30065 0.09435217482700864 LSSLLHLSL 9 Unmodified _LSSLLHLSL_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.8001403808594 2 491.800217 981.585882 0.27967 0.00013754 0.36027 0.00017718 0.63993 0.00031472 491.80035192346185 67.669 0.44624 71.166 70.84 71.286 3.4964 71 40 2 0 0 0 0.011285 1 15538 15538 69.105 0 1 433590 + 25783 26509 16075 16084 30066 30066 0.09435217482700864 LSSLLHLSL 9 Unmodified _LSSLLHLSL_ 0 0 0 REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense REV__L1MC1_dup1141|chr2:11280631-11282069:+|1.0220558807349365|0.0491246219075831|4.38|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.8005676269531 2 491.800217 981.585882 0.29692 0.00014603 -0.096828 -4.762E-05 0.20009 9.8406E-05 491.8002039840416 67.509 0.6881 71.016 70.746 71.434 3.5077 103 61 3 0 0 0 0.021334 2 15407 15356;15407 62.573 0 1 469900 + 25784 26509 16075 16084 30067;30068 30068 0.09435217482700864 LSSLRKRTY 9 Unmodified _LSSLRKRTY_ 0 0 0 nc|ENSG00000114439|Q8WY36-3|BBX nc|ENSG00000114439|Q8WY36-3|BBX nc|ENSG00000114439|Q8WY36-3|BBX MULTI-MSMS UPN48_class_I_Rep_1 5 562.3350219726562 2 562.332747 1122.65094 0.44166 0.00024836 2.8515 0.0016035 3.2932 0.0018518 562.3343575975044 110.6 0.048386 114.23 114.21 114.26 3.6326 9 6 2 0 0 0 0.49026 1 26846 26846 1.6526 0.17072 1 51551 25785 16666 16076 16085 30069 30069 0.09452212008568495 LSSLRKRTY 9 Unmodified _LSSLRKRTY_ 0 0 0 nc|ENSG00000114439|Q8WY36-3|BBX nc|ENSG00000114439|Q8WY36-3|BBX nc|ENSG00000114439|Q8WY36-3|BBX MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 562.332747 1122.65094 0.44166 0.00024836 2.8515 0.0016035 3.2932 0.0018518 562.3343575975044 110.6 0.048386 114.23 114.21 114.26 3.6326 0.00038602 -0.0005991 NaN 1.6526 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 51551 25786 16666 16076 16085 0.09452212008568495 LSSMEIATI 9 Unmodified _LSSMEIATI_ 0 0 0 REV__nc|ENSG00000163535|Q562F6-2|SGO2 REV__nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-MSMS UPN47_class_I_Rep_1 2 482.7543029785156 2 482.754618 963.494683 0.0977 4.7165E-05 -0.23671 -0.00011427 -0.13901 -6.7106E-05 482.75434463357846 68.743 0.4707 72.107 71.859 72.33 3.3646 51 36 2 0 0 0 0.16559 1 16587 16587 24.021 0 1 70430 + 25787 19982 16077 16086 30070 30070 0.011475857230834663 LSSMEIATI 9 Unmodified _LSSMEIATI_ 0 0 0 REV__nc|ENSG00000163535|Q562F6-2|SGO2 REV__nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 482.754618 963.494683 0.11184 5.3991E-05 -0.27837 -0.00013438 -0.16653 -8.0393E-05 482.7544557769444 68.98 0.40342 72.178 71.985 72.388 3.1977 -0.055469 8.7415E-06 NaN 24.021 43 30 2 NaN NaN NaN NaN 0 NaN NaN 0 94394 + 25788 19982 16077 16086 0.011475857230834663 LSSPKFRR 8 Unmodified _LSSPKFRR_ 0 0 0 REV__ENSG00000060491|ENST00000290291|OGFR REV__ENSG00000060491|ENST00000290291|OGFR MULTI-MSMS UPN47_class_I_Rep_2 3 495.79632568359375 2 495.795801 989.577048 0.21436 0.00010628 1.726 0.00085574 1.9403 0.00096202 495.7960262626334 69.303 0.13406 72.579 72.473 72.608 3.2761 12 9 2 0 0 0 0.82752 1 16824 16824 2.5775 0.51773 1 108310 + 25789 17721 16078 16087 30071 30071 0.08184288636891779 LSSPVESVLFY 11 Unmodified _LSSPVESVLFY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS UPN48_class_I_Rep_2 6 620.8273315429688 2 620.826629 1239.63871 0.49023 0.00030435 -0.064439 -4.0005E-05 0.42579 0.00026434 620.8264533397714 83.536 0.41901 87.218 87.042 87.461 3.6814 57 44 2 0 0 0 0.1397 2 19828 19828;19865 56.177 20.05 1 125320 25790 4648 16079 16088 30072;30073 30072 0.028471307548443292 LSSPVESVLFY 11 Unmodified _LSSPVESVLFY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MSMS UPN48_class_I_Rep_3 7 620.8261108398438 2 620.826629 1239.63871 NaN NaN NaN NaN NaN NaN NaN 83.515 1 87.244 86.744 87.744 3.7281 0 0 0 0.00031663 1 19801 19801 47.749 18.667 1 25791 4648 16079 16088 30074 30074 0.028471307548443292 LSSTPLYGY 9 Unmodified _LSSTPLYGY_ 0 0 0 L1MB8_dup2795|chr3:49388801-49389060:+|1.814811959846741|0.0040806171472257|8.8|151.0|15|2|anti-sense L1MB8_dup2795|chr3:49388801-49389060:+|1.814811959846741|0.0040806171472257|8.8|151.0|15|2|anti-sense L1MB8_dup2795|chr3:49388801-49389060:+|1.814811959846741|0.0040806171472257|8.8|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.7520446777344 2 500.752933 999.491313 0.19067 9.5478E-05 -0.30519 -0.00015282 -0.11452 -5.7347E-05 500.75265334104085 62.128 0.67822 65.294 65.014 65.693 3.1667 117 49 3 0 0 0 0.18929 1 14819 14819 21.747 0 1 298620 25792 10988 16080 16089 30075 30075 -0.008453410592892396 LSTEEWPHLF 10 Unmodified _LSTEEWPHLF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|178|3|anti-sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|178|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 630.3098754882812 2 629.808771 1257.60299 0.52589 0.00033121 -0.47852 -0.00030138 0.047369 2.9834E-05 629.8083581630667 65.129 0.38573 68.608 68.497 68.883 3.4792 39 26 2 0 0 0 0.51565 1 14813 14813 10.074 0.6908 1 123800 + 25793 30537 16081 16090 30076 30076 -0.015509067021639567 LSTFDEVSY 9 Unmodified _LSTFDEVSY_ 0 0 0 REV__L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense REV__L1MEc_dup10260|chr9:92528103-92529140:+|1.7794656580421395|0.0136340507528888|7.03|151.0|50|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.7457275390625 2 530.745305 1059.47606 0.31107 0.0001651 0.50551 0.0002683 0.81658 0.00043339 530.7456001137983 59.375 0.39615 62.649 62.5 62.896 3.2731 46 27 2 0 0 0 0.28552 1 13822 13822 14.838 4.0143 1 79889 + 25794 28344 16082 16091 30077 30077 -0.05130252647131783 LSTGVAEVVTF 11 Unmodified _LSTGVAEVVTF_ 0 0 0 Tigger4_dup349|chr3:196921051-196921405:-|1.4828081909975577|0.1144810627230433|3.7|151.0|7|2|sense Tigger4_dup349|chr3:196921051-196921405:-|1.4828081909975577|0.1144810627230433|3.7|151.0|7|2|sense Tigger4_dup349|chr3:196921051-196921405:-|1.4828081909975577|0.1144810627230433|3.7|151.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.80615234375 2 561.805697 1121.59684 0.48643 0.00027328 -0.060795 -3.4155E-05 0.42564 0.00023912 561.8053807831083 74.626 0.099663 78.216 78.13 78.23 3.59 15 9 2 0 0 0 0.61292 1 17558 17558 4.897 0.141 1 81364 25795 33422 16083 16092 30078 30078 0.040905750663114304 LSTHIIVIR 9 Unmodified _LSTHIIVIR_ 0 0 0 REV__MER66-int_dup75|chr1:149681833-149683385:-|1.991980696433827|0.211184805491038|3.24|148.0|101|3|anti-sense REV__MER66-int_dup75|chr1:149681833-149683385:-|1.991980696433827|0.211184805491038|3.24|148.0|101|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 526.3350830078125 2 526.334759 1050.65496 0.41235 0.00021703 -0.080581 -4.2413E-05 0.33177 0.00017462 526.3346316698231 57.897 1.5899 61.391 60.802 62.392 3.4942 328 112 4 0 0 0 0.23293 1 12861 12861 18.146 4.2403 1 4487600 + 25796 31529 16084 16093 30079 30079 0.13166301502246824 LSTIRTLLA 9 Unmodified _LSTIRTLLA_ 0 0 0 REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|140|3|sense REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|140|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 494.7662353515625 2 494.313492 986.612431 0.25058 0.00012387 0.39475 0.00019513 0.64533 0.000319 494.3134503181582 50.531 0.15239 54.225 54.189 54.342 3.6946 11 9 2 0 0 0 0.12321 1 10347 10347 3.9444 0 1 76899 + 25797 30076 16085 16094 30080 30080 0.11858906374050093 LSTKVVLQL 9 Unmodified _LSTKVVLQL_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|38|1|sense;Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|78|2|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|38|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|38|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 500.823974609375 2 500.823692 999.632832 0.26044 0.00013044 0.10705 5.3614E-05 0.36749 0.00018405 500.8236506461925 61.215 0.79212 64.728 64.293 65.085 3.5128 114 66 2 0 0 0 0.15547 3 13527 13411;13527;13569 24.991 0 1 191390 25798 7981 16086 16095 30081;30082;30083 30082 0.13300077033864 LSTLAFFR 8 Unmodified _LSTLAFFR_ 0 0 0 REV__ENST00000589797.5_1_17:40738856-40760685:-|nuORF REV__ENST00000589797.5_1_17:40738856-40760685:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 477.774169921875 2 477.774003 953.533452 0.046903 2.2409E-05 0.55391 0.00026464 0.60081 0.00028705 477.7742113936502 64.294 0.36473 67.469 67.195 67.56 3.1741 30 24 2 0 0 0 0.82752 1 15357 15357 8.5933 0 1 60160 + 25799 23160 16087 16096 30084 30084 0.05482679139765878 LSTLTIIQTLH 11 Unmodified _LSTLTIIQTLH_ 0 0 0 REV__L1MD3_dup450|chr2:26268174-26268864:+|1.2874427724260102|0.0869505448656716|3.89|151.0|24|3|sense REV__L1MD3_dup450|chr2:26268174-26268864:+|1.2874427724260102|0.0869505448656716|3.89|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 620.3707275390625 2 620.368995 1238.72344 NaN NaN NaN NaN NaN NaN NaN 88.15 1 91.597 91.097 92.097 3.4471 0 0 0 0.38417 1 21920 21920 1.0715 0.5467 1 + 25800 27486 16088 16097 30085 30085 0.11362501291455374 LSTRTAQVI 9 Unmodified _LSTRTAQVI_ 0 0 0 REV__ENST00000537653.5_1_12:14576849-14628955:+|nuORF REV__ENST00000537653.5_1_12:14576849-14628955:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.79339599609375 2 494.792924 987.571294 -0.65752 -0.00032533 0.92263 0.00045651 0.26511 0.00013117 494.793451555731 13.87 0.25948 17.239 17.186 17.445 3.3697 39 29 2 0 0 0 0.41259 1 416 416 7.2892 1.0834 1 57951 + 25801 20417 16089 16098 30086 30086 0.07701145334567627 LSTRTAQVI 9 Unmodified _LSTRTAQVI_ 0 0 0 REV__ENST00000537653.5_1_12:14576849-14628955:+|nuORF REV__ENST00000537653.5_1_12:14576849-14628955:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 494.792924 987.571294 -0.34909 -0.00017273 0.56354 0.00027884 0.21445 0.00010611 494.7933603936727 13.767 0.2285 17.224 17.145 17.373 3.457 -0.00060198 6.6044E-05 NaN 7.2892 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 63307 + 25802 20417 16089 16098 0.07701145334567627 LSTTMCDSMHE 11 Unmodified _LSTTMCDSMHE_ 0 0 0 MER77_dup659|chr9:99127016-99127626:-|1.2671476759244478|0.0870140141816719|3.86|151.0|35|2|anti-sense MER77_dup659|chr9:99127016-99127626:-|1.2671476759244478|0.0870140141816719|3.86|151.0|35|2|anti-sense MER77_dup659|chr9:99127016-99127626:-|1.2671476759244478|0.0870140141816719|3.86|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 627.7408447265625 2 627.743599 1253.47264 NaN NaN NaN NaN NaN NaN NaN 22.873 1 26.224 25.724 26.724 3.3503 0 0 0 0.38417 1 2811 2811 1.1933 0.66858 1 25803 16213 16090 16099 30087 30087 -0.1439533007933278 LSVATFINILS 11 Unmodified _LSVATFINILS_ 0 0 0 Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|64|1|anti-sense Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|64|1|anti-sense Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|64|1|anti-sense MSMS UPN46_class_I_Rep_3 1 589.3427124023438 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 91.61 1 91.61 91.11 92.11 0 0 0 0 0.38417 1 22135 22135 1.0715 0 1 25804 33005 16091 16100 30088 30088 0.09415427371413898 LSVAYVRCALL 11 Unmodified _LSVAYVRCALL_ 0 0 0 REV__L1PA8A_dup2436|chr22:46817264-46822815:-|4.477623319494518|0.0656514705541751|6.09|151.0|324|3|anti-sense REV__L1PA8A_dup2436|chr22:46817264-46822815:-|4.477623319494518|0.0656514705541751|6.09|151.0|324|3|anti-sense MSMS UPN46_class_I_Rep_3 1 604.348876953125 2 604.347009 1206.67946 NaN NaN NaN NaN NaN NaN NaN 90.771 1 90.771 90.271 91.271 0 0 0 0 0.38417 1 21894 21894 1.3295 0.80477 1 + 25805 30275 16092 16101 30089 30089 0.08439193593471828 LSVDIIYGF 9 Unmodified _LSVDIIYGF_ 0 0 0 REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 513.777587890625 2 513.778951 1025.54335 0.36317 0.00018659 -1.9111 -0.00098187 -1.5479 -0.00079528 513.7778647316704 77.954 0.23858 81.576 81.514 81.752 3.6215 44 27 3 0 0 0 0.35081 1 18447 18447 10.824 0.75 1 194520 + 25806 21519 16093 16102 30090 30090 0.031598223544506254 LSVDIIYGF 9 Unmodified _LSVDIIYGF_ 0 0 0 REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF MSMS UPN48_class_I_Rep_3 7 513.7791137695312 2 513.778951 1025.54335 NaN NaN NaN NaN NaN NaN NaN 78.037 1 81.658 81.158 82.158 3.6216 0 0 0 0.29868 1 18461 18461 10.824 0.75 1 + 25807 21519 16093 16102 30091 30091 0.031598223544506254 LSVDIIYGF 9 Unmodified _LSVDIIYGF_ 0 0 0 REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 513.7791137695312 2 513.778951 1025.54335 0.36317 0.00018659 -1.9111 -0.00098187 -1.5479 -0.00079528 513.7778647316704 77.954 0.23858 81.576 81.514 81.752 3.6215 44 27 3 0 0 0 0.10699 1 18461 18461 10.824 0.75 1 194520 + 25808 21519 16093 16102 30092 30092 0.031598223544506254 LSVDIIYGF 9 Unmodified _LSVDIIYGF_ 0 0 0 REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 513.778951 1025.54335 0.27025 0.00013885 -1.8697 -0.00096064 -1.5995 -0.00082179 513.7779973489972 78.064 0.29118 81.586 81.506 81.798 3.5221 0.0053774 1.3465E-05 NaN 10.824 50 33 3 NaN NaN NaN NaN 0 NaN NaN 0 175400 + 25809 21519 16093 16102 0.031598223544506254 LSVDLLFWVL 10 Unmodified _LSVDLLFWVL_ 0 0 0 THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|80|3|anti-sense THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|80|3|anti-sense THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 602.8196411132812 2 602.85245 1203.69035 NaN NaN NaN NaN NaN NaN NaN 47.38 1 50.902 50.402 51.402 3.5219 0 0 0 0.53105 1 9357 9357 6.2058 0 1 25810 32943 16094 16103 30093 30093 0.09664919239412484 LSVGEWVNKV 10 Unmodified _LSVGEWVNKV_ 0 0 0 L1MC1_dup1607|chr2:127785149-127786033:-|1.839376587492992|0.0413287132023649|5.48|151.0|26|3|sense L1MC1_dup1607|chr2:127785149-127786033:-|1.839376587492992|0.0413287132023649|5.48|151.0|26|3|sense L1MC1_dup1607|chr2:127785149-127786033:-|1.839376587492992|0.0413287132023649|5.48|151.0|26|3|sense MSMS UPN48_class_I_Rep_3 7 565.8123779296875 2 565.813856 1129.61316 NaN NaN NaN NaN NaN NaN NaN 35.066 1 38.738 38.238 39.238 3.6721 0 0 0 0.53105 1 5641 5641 10.8 0.72558 1 25811 11118 16095 16104 30094 30094 0.053537010230684245 LSVGRHLAY 9 Unmodified _LSVGRHLAY_ 0 0 0 L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|43|2|anti-sense L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|43|2|anti-sense L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|43|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.7893981933594 2 508.287808 1014.56106 0.21117 0.00010734 -0.33525 -0.0001704 -0.12408 -6.3069E-05 508.287571502724 48.431 1.4095 51.955 51.47 52.88 3.5239 239 101 3 0 0 0 0.19147 1 9802 9802 21.537 1.0834 1 1219100 25812 10811 16096 16105 30095 30095 0.054365823999773966 LSVGRHLAY 9 Unmodified _LSVGRHLAY_ 0 0 0 L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|43|2|anti-sense L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|43|2|anti-sense L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|43|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.287841796875 2 508.287808 1014.56106 0.18246 9.2744E-05 -0.28782 -0.00014629 -0.10536 -5.3551E-05 508.2876369189592 48.884 0.5855 52.513 52.309 52.894 3.6291 94 45 3 0 0 0 0.26468 1 9710 9710 16.149 0.30192 1 303910 25813 10811 16096 16105 30096 30096 0.054365823999773966 LSVGRKPL 8 Unmodified _LSVGRKPL_ 0 0 0 L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|22|2|sense L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|22|2|sense L1MC5_dup10025|chr11:43456482-43458002:+|8.344317106715549|0.162112495799804|5.69|151.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 435.7638854980469 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 49.437 1 49.437 48.937 49.937 0 0 0 0 0.40604 1 10378 10378 2.5775 0 1 25814 11641 16097 16106 30097 30097 0.10990385376646827 LSVHQKTHTEE 11 Unmodified _LSVHQKTHTEE_ 0 0 0 nc|ENSG00000197566|Q9P2J8-2|ZNF624;ENST00000579528.1_1_17:16525604-16527848:-|nuORF;ENSG00000197566|ENST00000311331|ZNF624 nc|ENSG00000197566|Q9P2J8-2|ZNF624 nc|ENSG00000197566|Q9P2J8-2|ZNF624 MULTI-MSMS UPN47_class_I_Rep_2 3 436.889404296875 3 436.889603 1307.64698 -0.73812 -0.00032248 0.22209 9.7031E-05 -0.51603 -0.00022545 436.8896390718294 30.671 0.73295 34.154 33.846 34.579 3.4821 112 57 3 0 0 0 0.65891 1 5085 5085 2.4348 0.35082 1 134130 25815 5376 16098 16107 30098 30098 0.005460777241751202 LSVISAPMLS 10 Unmodified _LSVISAPMLS_ 0 0 0 REV__ENSG00000189136.9,UBE2Q2P1,chr15,-,I9.1,84534239,84538531|54|5.55|2|intron REV__ENSG00000189136.9,UBE2Q2P1,chr15,-,I9.1,84534239,84538531|54|5.55|2|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 508.8092041015625 2 509.286085 1016.55762 0.23424 0.00011929 -0.29052 -0.00014796 -0.056283 -2.8664E-05 509.2858867422913 55.675 0.57356 58.852 58.561 59.134 3.1779 53 35 3 0 0 0 0.84575 1 12748 12748 3.5965 0 1 112650 + 25816 21000 16099 16108 30099 30099 0.050001515111148365 LSVKFGATL 9 Unmodified _LSVKFGATL_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS UPN48_class_I_Rep_1 5 468.2814025878906 2 468.28166 934.548768 0.14121 6.6126E-05 -0.42991 -0.00020132 -0.2887 -0.00013519 468.28137783169956 55.808 0.65946 59.309 58.946 59.605 3.5014 70 46 2 0 0 0 0.095207 1 11948 11948 34.932 5.8505 1 136450 25817 2139 16100 16109 30100 30100 0.07887545936955576 LSVKFGATL 9 Unmodified _LSVKFGATL_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS UPN48_class_I_Rep_2 6 468.28131103515625 2 468.28166 934.548768 0.32228 0.00015092 -0.47409 -0.00022201 -0.15181 -7.1091E-05 468.2813470392283 55.784 0.63307 59.34 59.007 59.64 3.5559 78 44 2 0 0 0 0.14474 1 11911 11911 26.021 4.2741 1 214090 25818 2139 16100 16109 30101 30101 0.07887545936955576 LSVKFGATL 9 Unmodified _LSVKFGATL_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS UPN48_class_I_Rep_3 7 468.2814025878906 2 468.28166 934.548768 0.084796 3.9708E-05 -0.37943 -0.00017768 -0.29463 -0.00013797 468.28137901699824 55.737 0.62739 59.292 58.885 59.512 3.5554 70 42 2 0 0 0 0.10956 1 11780 11780 32.037 4.4087 1 207510 25819 2139 16100 16109 30102 30102 0.07887545936955576 LSVLIMGLMKR 11 Unmodified _LSVLIMGLMKR_ 0 0 0 REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|223|3|anti-sense REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|223|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 630.88037109375 2 630.880161 1259.74577 0.59688 0.00037656 -0.96028 -0.00060582 -0.36341 -0.00022927 630.8794578139859 36.737 0.48014 36.737 36.477 36.957 0 62 46 2 0 0 0 0.67264 1 6777 6777 1.1933 1.1933 1 120890 + 25820 25497 16101 16110 30103 30103 0.12628686163884595 LSVMPLFLV 9 Unmodified _LSVMPLFLV_ 0 0 0 REV__HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|44|3|anti-sense REV__HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.8035888671875 2 509.803914 1017.59328 0.321 0.00016365 -0.37051 -0.00018889 -0.049509 -2.524E-05 509.8036371465231 76.91 1.1213 80.512 80.1 81.222 3.6016 145 105 2 0 0 0 0.48414 1 18265 18265 2.3027 0 1 324950 + 25821 23472 16102 16111 30104 30104 0.08518233758775295 LSVMPLFLV 9 Unmodified _LSVMPLFLV_ 0 0 0 REV__HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|44|3|anti-sense REV__HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|44|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 509.803914 1017.59328 0.30313 0.00015454 -0.19751 -0.00010069 0.10563 5.3848E-05 509.8037000513163 80.608 0.19055 80.608 80.46 80.651 0 0.048351 0.00013286 NaN 2.3027 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 476470 + 25822 23472 16102 16111 0.08518233758775295 LSVNLWHLA 9 Unmodified _LSVNLWHLA_ 0 0 0 ENST00000566850.1_1_16:19710790-19711795:+|nuORF;nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENSG00000103544|ENST00000417362|VPS35L ENST00000566850.1_1_16:19710790-19711795:+|nuORF ENST00000566850.1_1_16:19710790-19711795:+|nuORF MSMS UPN48_class_I_Rep_3 7 526.7974853515625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 21.434 1 25.149 24.649 25.649 3.7144 0 0 0 0.39428 1 2010 2010 2.0598 0.21551 1 25823 1665 16103 16112 30105 30105 0.05773753059816045 LSVNRKPGI 9 Unmodified _LSVNRKPGI_ 0 0 0 REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3 REV__nc|ENSG00000131355|Q9BY15-2|ADGRE3 MSMS UPN47_class_I_Rep_3 4 492.31036376953125 2 492.303458 982.592364 NaN NaN NaN NaN NaN NaN NaN 57.519 1 60.687 60.187 61.187 3.1681 0 0 0 0.37476 1 13299 13299 6.7232 0 1 + 25824 18974 16104 16113 30106 30106 0.10037155434076794 LSVPKNNLVN 10 Unmodified _LSVPKNNLVN_ 0 0 0 REV__nc|ENSG00000004487|O60341|KDM1A REV__nc|ENSG00000004487|O60341|KDM1A MSMS UPN47_class_I_Rep_1 2 549.318603515625 2 549.319306 1096.62406 NaN NaN NaN NaN NaN NaN NaN 91.951 1 95.656 95.156 96.156 3.7053 0 0 0 0.53105 1 22931 22931 1.4819 0.68827 1 + 25825 17519 16105 16114 30107 30107 0.0796110339738334 LSVQTTWPY 9 Unmodified _LSVQTTWPY_ 0 0 0 HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|46|2|sense HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|46|2|sense HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|46|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.779296875 2 547.779482 1093.54441 0.43927 0.00024062 -0.10018 -5.4876E-05 0.33909 0.00018575 548.2810136417387 54.655 0.47094 57.84 57.58 58.051 3.1856 34 26 2 0 0 0 0.28552 1 12380 12380 14.838 2.3067 1 85273 25826 8147 16106 16115 30108 30108 0.0013803672338781325 LSVQTTWPY 9 Unmodified _LSVQTTWPY_ 0 0 0 HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|46|2|sense HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|46|2|sense HERVH-int_dup4006|chr10:35402831-35406174:-|4.166553375073607|0.1176136264599949|5.15|151.0|46|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 547.779482 1093.54441 0.49516 0.00027124 -0.25842 -0.00014156 0.23674 0.00012968 547.7791218995653 54.425 0.53412 57.743 57.49 58.024 3.3187 -0.048494 -8.9998E-05 NaN 14.838 35 26 2 NaN NaN NaN NaN 0 NaN NaN 0 85556 25827 8147 16106 16115 0.0013803672338781325 LSVRGNAAVY 10 Unmodified _LSVRGNAAVY_ 0 0 0 REV__L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|105|3|anti-sense REV__L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|105|3|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2890014648438 2 525.290548 1048.56654 NaN NaN NaN NaN NaN NaN NaN 74.481 1 77.875 77.375 78.375 3.3937 0 0 0 0.53105 1 18333 18333 3.9444 1.0552 1 + 25828 25737 16107 16116 30109 30109 0.044202611917853574 LSVSGNRLLP 10 Unmodified _LSVSGNRLLP_ 0 0 0 ENST00000608933.5_1_4:89205680-89205842:-|nuORF ENST00000608933.5_1_4:89205680-89205842:-|nuORF ENST00000608933.5_1_4:89205680-89205842:-|nuORF MSMS UPN47_class_I_Rep_2 3 528.31494140625 2 528.314023 1054.61349 NaN NaN NaN NaN NaN NaN NaN 89.876 1 93.333 92.833 93.833 3.4571 0 0 0 0.53105 1 22321 22321 1.4819 0.28856 1 25829 7699 16108 16117 30110 30110 0.08837120742964544 LSVSLRAAVT 10 Unmodified _LSVSLRAAVT_ 0 0 0 REV__ENSG00000138002|ENST00000260570|IFT172 REV__ENSG00000138002|ENST00000260570|IFT172 MULTI-MSMS UPN47_class_I_Rep_3 4 508.8092041015625 2 508.808574 1015.60259 0.22867 0.00011635 -0.0069478 -3.5351E-06 0.22172 0.00011281 508.808563302046 55.79 0.60957 58.968 58.719 59.329 3.1779 58 41 2 0 0 0 0.54466 1 12748 12748 6.2058 0 1 105690 + 25830 19257 16109 16118 30111 30111 0.09541718368643615 LSVWGPPL 8 Unmodified _LSVWGPPL_ 0 0 0 REV__ENST00000524903.1_1_11:6639992-6640524:-|nuORF REV__ENST00000524903.1_1_11:6639992-6640524:-|nuORF MSMS UPN48_class_I_Rep_2 6 434.759033203125 2 434.749996 867.485439 NaN NaN NaN NaN NaN NaN NaN 78.119 1 81.742 81.242 82.242 3.6222 0 0 0 0.40364 1 18527 18527 5.7604 0.52976 1 + 25831 20169 16110 16119 30112 30112 0.046396052197110293 LSVYKRLL 8 Unmodified _LSVYKRLL_ 0 0 0 L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|117|3|anti-sense L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|117|3|anti-sense L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|117|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 496.3190002441406 2 496.318577 990.622602 0.20823 0.00010335 0.091866 4.5595E-05 0.3001 0.00014894 496.3185267617958 43.142 0.76676 46.904 46.635 47.402 3.7617 93 60 2 0 0 0 0.82752 1 8000 8000 25.399 4.9457 1 142600 25832 10793 16111 16120 30113 30113 0.12691514099276446 LSWFWVFA 8 Unmodified _LSWFWVFA_ 0 0 0 REV__HAL1_dup16379|chr12:11789321-11790679:-|4.983722820500872|0.0570760947042332|6.45|151.0|69|2|anti-sense REV__HAL1_dup16379|chr12:11789321-11790679:-|4.983722820500872|0.0570760947042332|6.45|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_3 4 528.2792358398438 2 528.271096 1054.52764 NaN NaN NaN NaN NaN NaN NaN 63.176 1 66.346 65.846 66.846 3.1698 0 0 0 0.38221 1 15030 15030 14.582 3.7578 1 + 25833 23366 16112 16121 30114 30114 0.002555806280724937 LSWLKGHK 8 Unmodified _LSWLKGHK_ 0 0 0 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 MULTI-MSMS UPN47_class_I_Rep_3 4 484.7880554199219 2 484.787444 967.560336 -0.32295 -0.00015656 -1.6336 -0.00079194 -1.9565 -0.0009485 484.78810549308184 40.52 0.14403 43.757 43.689 43.833 3.2372 9 8 2 0 0 0 0.82752 1 8130 8130 2.0598 0 1 29993 25834 988 16113 16122 30115 30115 0.07525787750944346 LSWLKGHK 8 Unmodified _LSWLKGHK_ 0 0 0 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 ENSG00000064218|ENST00000190165|DMRT3 MSMS UPN48_class_I_Rep_2 6 484.7872619628906 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 65.316 1 68.795 68.295 69.295 3.4792 0 0 0 0.40643 1 14838 14838 2.0598 1.3694 1 25835 988 16113 16122 30116 30116 0.07525787750944346 LSWNKDEA 8 Unmodified _LSWNKDEA_ 0 0 0 REV__L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|4|1|sense REV__L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 481.73309326171875 2 481.732532 961.45051 0.1988 9.5766E-05 0.019141 9.2207E-06 0.21794 0.00010499 481.7324548803119 53.631 1.3143 53.631 53.19 54.504 0 309 140 3 0 0 0 0.82752 1 11721 11721 16.942 3.4344 1 2286200 + 25836 28763 16114 16123 30117 30117 -0.031756823789010014 LSWNPPLYTG 10 Unmodified _LSWNPPLYTG_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN48_class_I_Rep_3 7 574.2930908203125 2 574.292756 1146.57096 NaN NaN NaN NaN NaN NaN NaN 40.525 1 44.176 43.676 44.676 3.6509 0 0 0 0.53105 1 7217 7217 1.3295 0.13619 1 25837 3707 16115 16124 30118 30118 0.003537256147183143 LSWSFRHR 8 Unmodified _LSWSFRHR_ 0 0 0 L1MDa_dup4480|chr10:1063099-1064583:+|1.354483007262144|0.06082465567059|4.48|151.0|75|2|anti-sense L1MDa_dup4480|chr10:1063099-1064583:+|1.354483007262144|0.06082465567059|4.48|151.0|75|2|anti-sense L1MDa_dup4480|chr10:1063099-1064583:+|1.354483007262144|0.06082465567059|4.48|151.0|75|2|anti-sense MSMS UPN48_class_I_Rep_2 6 544.7908325195312 2 544.79105 1087.56755 NaN NaN NaN NaN NaN NaN NaN 41.682 1 45.433 44.933 45.933 3.7508 0 0 0 0.40625 1 7636 7636 2.3027 0.4585 1 25838 12121 16116 16125 30119 30119 0.02726520351347972 LSWSHLWE 8 Unmodified _LSWSHLWE_ 0 0 0 ENST00000420503.1_1_1:22352034-22356862:+|nuORF ENST00000420503.1_1_1:22352034-22356862:+|nuORF ENST00000420503.1_1_1:22352034-22356862:+|nuORF MSMS UPN47_class_I_Rep_3 4 529.2562866210938 2 529.258717 1056.50288 NaN NaN NaN NaN NaN NaN NaN 23.208 1 26.558 26.058 27.058 3.3503 0 0 0 0.40625 1 2910 2910 2.3027 0 1 25839 6679 16117 16126 30120 30120 -0.023110992452984647 LSYDPFSIL 9 Unmodified _LSYDPFSIL_ 0 0 0 REV__L1MB2_dup5656|chr11:59586202-59587218:+|1.524532185571687|0.2075162872167227|2.88|151.0|47|1|anti-sense REV__L1MB2_dup5656|chr11:59586202-59587218:+|1.524532185571687|0.2075162872167227|2.88|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 528.2776489257812 2 527.776408 1053.53826 0.33776 0.00017826 0.99273 0.00052394 1.3305 0.0007022 527.7769607569861 77.026 0.43574 80.536 80.213 80.649 3.5102 58 44 2 0 0 0 0.15122 2 18229 18229;18337 25.399 0 1 262840 + 25840 25750 16118 16127 30121;30122 30121 0.01363518491848481 LSYFFCCA 8 Unmodified _LSYFFCCA_ 0 0 0 L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense;L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|49|2|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.81488037109375 2 477.198425 952.382296 NaN NaN NaN NaN NaN NaN NaN 30.759 1 34.504 34.004 35.004 3.7449 0 0 0 0.40738 1 5069 5069 0.79363 0 1 25841 13550 16119 16128 30123 30123 -0.0957996655477018 LSYFFCCA 8 Unmodified _LSYFFCCA_ 0 0 0 L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense;L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|49|2|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_3 4 476.7760925292969 2 477.198425 952.382296 NaN NaN NaN NaN NaN NaN NaN 45.16 1 48.404 47.904 48.904 3.2441 0 0 0 0.40738 1 9541 9541 0.79363 0 1 25842 13550 16119 16128 30124 30124 -0.0957996655477018 LSYFFCCA 8 Unmodified _LSYFFCCA_ 0 0 0 L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense;L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|49|2|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.8149719238281 2 477.198425 952.382296 NaN NaN NaN NaN NaN NaN NaN 24.536 1 28.176 27.676 28.676 3.6397 0 0 0 0.40738 1 2866 2866 0.79363 0 1 25843 13550 16119 16128 30125 30125 -0.0957996655477018 LSYFPCFFF 9 Unmodified _LSYFPCFFF_ 0 0 0 L1MEh_dup2258|chr13:45363578-45364045:-|1.7078687377930923|0.364339214895766|2.23|151.0|30|3|anti-sense L1MEh_dup2258|chr13:45363578-45364045:-|1.7078687377930923|0.364339214895766|2.23|151.0|30|3|anti-sense L1MEh_dup2258|chr13:45363578-45364045:-|1.7078687377930923|0.364339214895766|2.23|151.0|30|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.7689208984375 2 585.770071 1169.52559 NaN NaN NaN NaN NaN NaN NaN 71.658 1 71.658 71.158 72.158 0 0 0 0 0.35339 1 16521 16521 7.9102 1.5561 1 25844 13442 16120 16129 30126 30126 -0.052392161720263175 LSYGEDCIFQ 10 Unmodified _LSYGEDCIFQ_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MSMS UPN47_class_I_Rep_1 2 587.7584838867188 2 587.757889 1173.50123 -0.049817 -2.9281E-05 0.10627 6.2463E-05 0.056457 3.3183E-05 587.7577196302285 33.498 0.56974 37.196 36.969 37.539 3.6983 60 35 2 0 0 0 0.56333 1 5994 5994 1.4819 0.68827 1 130570 + 25845 20510 16121 16130 30127 30127 -0.07858521116213524 LSYHGFFDACT 11 Unmodified _LSYHGFFDACT_ 0 0 0 REV__MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|2|1|sense REV__MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 630.770751953125 2 630.771331 1259.52811 0.50875 0.00032091 -0.22108 -0.00013945 0.28767 0.00018145 630.7712867072521 51.52 0.79649 54.858 54.617 55.413 3.3386 64 39 2 0 0 0 0.48412 2 11388 11388;11405 8.1555 1.0538 1 123630 + 25846 31143 16122 16131 30128;30129 30128 -0.09127412505017674 LSYHGFFDACT 11 Unmodified _LSYHGFFDACT_ 0 0 0 REV__MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|2|1|sense REV__MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 630.7716674804688 2 630.771331 1259.52811 NaN NaN NaN NaN NaN NaN NaN 51.738 1 54.944 54.444 55.444 3.2055 0 0 0 0.36307 1 11539 11539 8.1555 1.0538 1 + 25847 31143 16122 16131 30130 30130 -0.09127412505017674 LSYISAKAIK 10 Unmodified _LSYISAKAIK_ 0 0 0 REV__HERVH-int_dup5225|chr16:30259483-30260042:+|10.116692415378212|0.4560147608122307|4.47|151.0|1|1|sense REV__HERVH-int_dup5225|chr16:30259483-30260042:+|10.116692415378212|0.4560147608122307|4.47|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 547.3321533203125 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 68.693 1 72.202 71.702 72.702 3.5094 0 0 0 0.53105 1 15769 15769 1.4819 0 1 + 25848 23689 16123 16132 30131 30131 0.11167462062553568 LSYISVTSEV 10 Unmodified _LSYISVTSEV_ 0 0 0 REV__L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|44|2|anti-sense REV__L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|44|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.2719116210938 2 549.289879 1096.56521 -0.045438 -2.4958E-05 1.8304 0.0010054 1.7849 0.00098045 549.2908983202478 39.822 0.50994 43.059 42.747 43.257 3.2372 40 34 2 0 0 0 0.54466 1 7972 7972 6.2058 0 1 57459 + 25849 26495 16124 16133 30132 30132 0.02078582312378785 LSYLATAAALH 11 Unmodified _LSYLATAAALH_ 0 0 0 REV__ENSG00000149633|ENST00000279024|KIAA1755 REV__ENSG00000149633|ENST00000279024|KIAA1755 MSMS UPN48_class_I_Rep_1 5 565.8121948242188 2 565.813856 1129.61316 NaN NaN NaN NaN NaN NaN NaN 35.159 1 38.673 38.173 39.173 3.5144 0 0 0 0.38417 1 5716 5716 5.2969 0.96765 1 + 25850 19623 16125 16134 30133 30133 0.05353701023091162 LSYSEILRL 9 Unmodified _LSYSEILRL_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS UPN48_class_I_Rep_1 5 547.316162109375 2 547.316232 1092.61791 0.49534 0.00027111 -1.0195 -0.000558 -0.52417 -0.00028689 547.3160409970494 70.337 0.38877 73.797 73.56 73.949 3.4598 58 30 3 0 0 0 0.33908 1 16377 16377 11.495 3.3392 1 155400 25851 976 16126 16135 30134 30134 0.0753058516584133 LSYSEILRL 9 Unmodified _LSYSEILRL_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS UPN48_class_I_Rep_2 6 547.3162231445312 2 547.316232 1092.61791 0.48117 0.00026335 -0.85317 -0.00046695 -0.372 -0.0002036 547.3159927699444 70.164 0.46431 73.699 73.544 74.008 3.5359 95 45 3 0 0 0 0.20317 2 16343 16298;16343 20.415 4.2654 1 124860 25852 976 16126 16135 30135;30136 30136 0.0753058516584133 LSYSEILRL 9 Unmodified _LSYSEILRL_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS UPN48_class_I_Rep_3 7 547.3160400390625 2 547.316232 1092.61791 0.51087 0.00027961 -0.81454 -0.00044581 -0.30367 -0.0001662 547.3159106072359 70.175 0.44217 73.688 73.411 73.853 3.5128 76 34 3 0 0 0 0.16799 3 16233 16191;16233;16268 23.79 7.6407 1 139960 25853 976 16126 16135 30137;30138;30139 30138 0.0753058516584133 LSYSEILRL 9 Unmodified _LSYSEILRL_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 547.316232 1092.61791 0.48252 0.00026409 -0.54346 -0.00029745 -0.060948 -3.3358E-05 547.3155069945022 69.972 0.078865 73.494 73.451 73.529 3.5216 -0.096766 0.00028769 NaN 23.79 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48212 25854 976 16126 16135 0.0753058516584133 LSYSEILRL 9 Unmodified _LSYSEILRL_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 547.316232 1092.61791 0.51292 0.00028073 -0.94558 -0.00051753 -0.43266 -0.0002368 547.3155574969162 70.411 0.10281 73.93 73.859 73.961 3.5185 0.12111 -2.7229E-05 NaN 20.415 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 78841 25855 976 16126 16135 0.0753058516584133 LSYTEILKI 9 Unmodified _LSYTEILKI_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1;nc|ENSG00000155849|Q92556-3|ELMO1;ENST00000464262.6_1_7:36910010-37025590:-|nuORF;nc|ENSG00000155849|Q92556-2|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MULTI-MSMS UPN48_class_I_Rep_1 5 540.3212280273438 2 540.320983 1078.62741 0.42445 0.00022934 -0.33465 -0.00018082 0.089799 4.852E-05 540.3209459540786 70.178 0.17606 73.637 73.524 73.7 3.4598 24 14 2 0 0 0 0.20317 1 16339 16339 20.415 4.2654 1 63823 25856 3713 16127 16136 30140 30140 0.09124353451397837 LSYYTRAL 8 Unmodified _LSYYTRAL_ 0 0 0 ENST00000490885.6_1_1:186645551-186649536:-|nuORF;ENSG00000073756|ENST00000367468|PTGS2 ENST00000490885.6_1_1:186645551-186649536:-|nuORF ENST00000490885.6_1_1:186645551-186649536:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 493.7879638671875 2 493.768917 985.523281 0.38552 0.00019036 0.73429 0.00036257 1.1198 0.00055292 493.76915545051986 56.506 0.14774 60.04 59.949 60.097 3.5333 17 12 2 0 0 0 0.72333 1 12151 12151 4.3292 0 1 119910 25857 1121 16128 16137 30141 30141 0.029940714145254788 LTAATNRTI 9 Unmodified _LTAATNRTI_ 0 0 0 REV__ENST00000310396.9_1_7:120687001-120704353:+|nuORF REV__ENST00000310396.9_1_7:120687001-120704353:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.7768249511719 2 480.777274 959.539994 -0.21446 -0.00010311 -0.39886 -0.00019176 -0.61332 -0.00029487 480.776948844079 14.334 0.34735 17.721 17.633 17.98 3.3871 71 43 2 0 0 0 0.37599 1 563 563 9.3831 2.66 1 83937 + 25858 21703 16129 16138 30142 30142 0.0586057230049164 LTAATNRTI 9 Unmodified _LTAATNRTI_ 0 0 0 REV__ENST00000310396.9_1_7:120687001-120704353:+|nuORF REV__ENST00000310396.9_1_7:120687001-120704353:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 480.777274 959.539994 -0.37762 -0.00018155 -0.09206 -4.426E-05 -0.46968 -0.00022581 480.7771027584131 14.264 0.36689 17.739 17.634 18.001 3.475 0.0091728 0.00017036 NaN 9.3831 70 46 2 NaN NaN NaN NaN 0 NaN NaN 0 84784 + 25859 21703 16129 16138 0.0586057230049164 LTADARVVI 9 Unmodified _LTADARVVI_ 0 0 0 nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 MULTI-MSMS UPN47_class_I_Rep_1 2 479.28997802734375 2 479.290017 956.565481 0.074727 3.5816E-05 0.02573 1.2332E-05 0.10046 4.8148E-05 479.28996042860337 54.612 1.0664 58.113 57.55 58.617 3.5014 132 59 3 0 0 0 0.38714 1 12252 12252 8.7454 0.83525 1 392210 25860 3678 16130 16139 30143 30143 0.0854604682289164 LTADARVVI 9 Unmodified _LTADARVVI_ 0 0 0 nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 MULTI-MSMS UPN47_class_I_Rep_2 3 479.2900695800781 2 479.290017 956.565481 0.23927 0.00011468 -0.28623 -0.00013719 -0.046964 -2.2509E-05 479.28985123319757 54.855 1.0447 58.174 57.787 58.832 3.3187 128 56 3 0 0 0 0.31407 1 12455 12455 13.042 0.80181 1 334560 25861 3678 16130 16139 30144 30144 0.0854604682289164 LTADARVVI 9 Unmodified _LTADARVVI_ 0 0 0 nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 MULTI-MSMS UPN47_class_I_Rep_3 4 479.2898864746094 2 479.290017 956.565481 0.067909 3.2548E-05 0.050202 2.4061E-05 0.11811 5.6609E-05 479.28994695310905 55.003 0.93938 58.181 57.813 58.753 3.1779 125 54 3 0 0 0 0.31407 1 12584 12584 13.042 13.042 1 364480 25862 3678 16130 16139 30145 30145 0.0854604682289164 LTADIVHDND 10 Unmodified _LTADIVHDND_ 0 0 0 REV__ENSG00000055609|ENST00000262189|KMT2C REV__ENSG00000055609|ENST00000262189|KMT2C MSMS UPN47_class_I_Rep_3 4 556.7633056640625 2 556.76456 1111.51457 NaN NaN NaN NaN NaN NaN NaN 74.674 1 77.92 77.42 78.42 3.2464 0 0 0 0.53105 1 18493 18493 6.7232 3.1267 1 + 25863 17698 16131 16140 30146 30146 -0.036729470126147135 LTAKDLLNH 9 Unmodified _LTAKDLLNH_ 0 0 0 L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|19|3|sense L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|19|3|sense L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 512.7916870117188 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 53.181 1 56.508 56.008 57.008 3.3266 0 0 0 0.31276 1 11921 11921 10.074 0 1 25864 12576 16132 16141 30147 30147 0.06045145334553581 LTAKNLFLIGR 11 Unmodified _LTAKNLFLIGR_ 0 0 0 REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-MSMS UPN47_class_I_Rep_2 3 623.3876342773438 2 623.387522 1244.76049 0.63471 0.00039567 0.47173 0.00029407 1.1064 0.00068974 623.3876781048372 108.68 0.83012 112.21 112.11 112.94 3.5333 205 98 4 0 0 0 0.33678 2 26473 26473;26524 12.241 3.4953 1 31049000 + 25865 21429 16133 16142 30148;30149 30148 0.14790217627864877 LTAKNLFLIGR 11 Unmodified _LTAKNLFLIGR_ 0 0 0 REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-MSMS UPN48_class_I_Rep_1 5 623.8897094726562 2 623.387522 1244.76049 0.4263 0.00026575 0.41214 0.00025692 0.83844 0.00052267 623.3875652916133 109.29 0.22819 112.93 112.88 113.1 3.6321 40 28 2 0 0 0 0.48412 1 26546 26546 8.1555 1.0538 1 827980 + 25866 21429 16133 16142 30150 30150 0.14790217627864877 LTAKNLFLIGR 11 Unmodified _LTAKNLFLIGR_ 0 0 0 REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-MSMS UPN48_class_I_Rep_2 6 623.388427734375 2 623.387522 1244.76049 0.49383 0.00030785 0.33427 0.00020838 0.8281 0.00051623 623.3875320177227 108.72 0.62381 112.39 112.23 112.85 3.6746 140 65 3 0 0 0 0.33678 1 25833 25833 12.241 4.6317 1 17460000 + 25867 21429 16133 16142 30151 30151 0.14790217627864877 LTAKRGIF 8 Unmodified _LTAKRGIF_ 0 0 0 nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 MSMS UPN47_class_I_Rep_1 2 453.28204345703125 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.171 1 53.8 53.3 54.3 3.6285 0 0 0 0.40364 1 10978 10978 5.7604 1.0044 1 25868 5618 16134 16143 30152 30152 0.09334385376655518 LTALPRNN 8 Unmodified _LTALPRNN_ 0 0 0 REV__L1MA9_dup8629|chr9:40966897-40969132:-|3.3957710148253963|0.1328926413969941|4.68|151.0|50|2|sense REV__L1MA9_dup8629|chr9:40966897-40969132:-|3.3957710148253963|0.1328926413969941|4.68|151.0|50|2|sense MSMS UPN46_class_I_Rep_3 1 449.76031494140625 2 449.758884 897.503215 NaN NaN NaN NaN NaN NaN NaN 109.14 1 109.14 108.64 109.64 0 0 0 0 0.39996 1 26762 26762 7.9102 1.187 1 + 25869 25647 16135 16144 30153 30153 0.05036320474562217 LTAMIFIHL 9 Unmodified _LTAMIFIHL_ 0 0 0 REV__L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|112|1|anti-sense REV__L1M4b_dup2704|chrX:136696651-136699370:+|4.02670609595473|0.0340346351138354|6.89|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.8070678710938 2 529.806988 1057.59942 NaN NaN NaN NaN NaN NaN NaN 55.663 1 59.141 58.641 59.641 3.4785 0 0 0 0.1724 1 12652 12652 18.135 1.5691 1 + 25870 24535 16136 16145 30154 30154 0.07292751990280522 LTAQLKNNF 9 Unmodified _LTAQLKNNF_ 0 0 0 REV__L1MCa_dup6492|chr16:47192079-47193160:-|1.594983355448292|0.0784491122778136|4.35|151.0|13|1|sense REV__L1MCa_dup6492|chr16:47192079-47193160:-|1.594983355448292|0.0784491122778136|4.35|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 524.7920532226562 2 524.792924 1047.57129 0.32622 0.0001712 -0.58071 -0.00030475 -0.25448 -0.00013355 524.7925053877321 38.104 0.66457 41.609 41.341 42.006 3.5052 76 59 2 0 0 0 0.35081 1 6529 6529 10.824 1.4408 1 123010 + 25871 27222 16137 16146 30155 30155 0.049411453345555856 LTATGGISAAY 11 Unmodified _LTATGGISAAY_ 0 0 0 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 MULTI-MSMS UPN47_class_I_Rep_1 2 512.76904296875 2 512.769114 1023.52368 -0.19173 -9.8313E-05 0.37021 0.00018983 0.17848 9.1521E-05 512.7692336645976 31.326 1.0599 35.056 34.751 35.811 3.7293 184 80 3 0 0 0 0.295 2 5344 5344;5389 16.149 0 1 653780 + 25872 19379 16138 16147 30156;30157 30156 0.012854463437065533 LTAVLRRN 8 Unmodified _LTAVLRRN_ 0 0 0 REV__Tigger1_dup134|chr1:35379399-35380147:-|1.1112800411118051|0.0520703508714971|4.42|151.0|1|1|sense REV__Tigger1_dup134|chr1:35379399-35380147:-|1.1112800411118051|0.0520703508714971|4.42|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 66.775 1 70.034 69.534 70.534 3.2588 0 0 0 0.40604 1 16063 16063 2.5775 0 1 + 25873 32380 16139 16148 30158 30158 0.1039228863688777 LTDADFGEAAK 11 Unmodified _LTDADFGEAAK_ 0 0 0 ENSG00000171587|ENST00000400454|DSCAM ENSG00000171587|ENST00000400454|DSCAM ENSG00000171587|ENST00000400454|DSCAM MSMS UPN48_class_I_Rep_3 7 569.2744750976562 2 569.274761 1136.53497 NaN NaN NaN NaN NaN NaN NaN 40.003 1 43.654 43.154 44.154 3.6509 0 0 0 0.38417 1 7061 7061 1.1933 0.50296 1 25874 4531 16140 16149 30159 30159 -0.02783776352816858 LTDDDLLRY 9 Unmodified _LTDDDLLRY_ 0 0 0 ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF ENSG00000114480|ENST00000429644|GBE1 ENSG00000114480|ENST00000429644|GBE1 MULTI-MSMS UPN47_class_I_Rep_1 2 562.2849731445312 2 562.285128 1122.5557 0.34556 0.0001943 -0.09213 -5.1803E-05 0.25343 0.0001425 562.2849418459726 55.149 0.66706 58.651 58.374 59.042 3.5014 89 40 3 0 0 0 0.04399 3 12491 12453;12491;12534 59.368 26.583 1 250300 25875 2077 16141 16150 30160;30161;30162 30161 -0.0006718597312556085 LTDDDLLRY 9 Unmodified _LTDDDLLRY_ 0 0 0 ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF ENSG00000114480|ENST00000429644|GBE1 ENSG00000114480|ENST00000429644|GBE1 MULTI-MSMS UPN47_class_I_Rep_2 3 562.2855834960938 2 562.285128 1122.5557 0.51798 0.00029125 -0.43137 -0.00024255 0.086613 4.8701E-05 562.2848715246251 55.467 0.59566 58.777 58.431 59.027 3.3102 79 33 3 0 0 0 0.04399 3 12605 12561;12605;12647 51.415 18.63 1 206710 25876 2077 16141 16150 30163;30164;30165 30164 -0.0006718597312556085 LTDDDLLRY 9 Unmodified _LTDDDLLRY_ 0 0 0 ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF ENSG00000114480|ENST00000429644|GBE1 ENSG00000114480|ENST00000429644|GBE1 MULTI-MSMS UPN47_class_I_Rep_3 4 562.7864379882812 2 562.285128 1122.5557 0.4201 0.00023622 -0.28722 -0.0001615 0.13288 7.4716E-05 562.2849737163297 55.512 0.66908 58.689 58.414 59.083 3.1779 85 41 3 0 0 0 0.013215 3 12696 12651;12696;12743 67.838 20.089 1 223380 25877 2077 16141 16150 30166;30167;30168 30167 -0.0006718597312556085 LTDDELFQY 9 Unmodified _LTDDELFQY_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN47_class_I_Rep_1 2 572.2640380859375 2 572.263862 1142.51317 0.33251 0.00019028 -0.013048 -7.4669E-06 0.31946 0.00018282 572.2638233259585 69.297 0.72192 72.664 72.333 73.055 3.3678 124 60 3 0 0 0 0.035561 4 16778 16714;16740;16778;16818 54.774 26.287 1 269310 25878 4534 16142 16151 30169;30170;30171;30172 30171 -0.05238581101366435 LTDDELFQY 9 Unmodified _LTDDELFQY_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN47_class_I_Rep_2 3 572.2638549804688 2 572.263862 1142.51317 0.40301 0.00023063 -0.061888 -3.5416E-05 0.34112 0.00019521 572.263732138382 69.478 0.82611 72.754 72.433 73.26 3.2761 141 67 3 0 0 0 0.035561 3 16879 16812;16879;16916 54.774 26.287 1 291780 25879 4534 16142 16151 30173;30174;30175 30174 -0.05238581101366435 LTDDELFQY 9 Unmodified _LTDDELFQY_ 0 0 0 ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN47_class_I_Rep_3 4 572.2639770507812 2 572.263862 1142.51317 0.44498 0.00025464 -0.036754 -2.1033E-05 0.40822 0.00023361 572.2638318719252 69.499 0.69839 72.703 72.364 73.062 3.2044 117 54 3 0 0 0 0.051515 4 16921 16879;16921;16962;17005 48.346 19.859 1 314930 25880 4534 16142 16151 30176;30177;30178;30179 30177 -0.05238581101366435 LTDDGNKWLY 10 Unmodified _LTDDGNKWLY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS UPN47_class_I_Rep_1 2 612.7987060546875 2 612.798403 1223.58225 0.31083 0.00019047 0.16563 0.0001015 0.47645 0.00029197 612.7982873260779 51.296 1.0377 54.889 54.477 55.515 3.5933 106 51 3 0 0 0 0.27282 2 11336 11294;11336 36.506 13.03 1 318790 25881 4710 16143 16152 30180;30181 30181 -0.020594970817910507 LTDDGNKWLY 10 Unmodified _LTDDGNKWLY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS UPN47_class_I_Rep_2 3 612.7984008789062 2 612.798403 1223.58225 0.50906 0.00031195 -0.13634 -8.3547E-05 0.37272 0.0002284 612.7981809124057 51.607 0.81588 54.945 54.617 55.433 3.3386 95 40 3 0 0 0 0.21509 3 11458 11415;11458;11506 43.772 14.691 1 265380 25882 4710 16143 16152 30182;30183;30184 30183 -0.020594970817910507 LTDDGNKWLY 10 Unmodified _LTDDGNKWLY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS UPN47_class_I_Rep_3 4 612.798583984375 2 612.798403 1223.58225 0.53597 0.00032844 -0.20075 -0.00012302 0.33522 0.00020542 612.7981535102911 51.737 0.92646 54.942 54.636 55.562 3.2055 111 52 3 0 0 0 0.34027 3 11550 11506;11550;11608 24.991 7.8781 1 211090 25883 4710 16143 16152 30185;30186;30187 30186 -0.020594970817910507 LTDEAFEFY 9 Unmodified _LTDEAFEFY_ 0 0 0 ENST00000495663.1_1_16:538965-546860:+|nuORF;nc|ENSG00000090565|O75154-3|RAB11FIP3 ENST00000495663.1_1_16:538965-546860:+|nuORF ENST00000495663.1_1_16:538965-546860:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 568.2522583007812 2 567.75313 1133.49171 0.36455 0.00020697 -1.4303 -0.00081207 -1.0658 -0.0006051 568.2530559410592 72.915 0.62424 76.294 76.03 76.654 3.3799 50 42 2 0 0 0 0.21527 1 17899 17899 19.257 5.7491 1 71522 25884 7094 16144 16153 30188 30188 -0.0696996613007741 LTDFDIRFY 9 Unmodified _LTDFDIRFY_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MULTI-MSMS UPN47_class_I_Rep_1 2 595.2991333007812 2 595.298039 1188.58152 0.3757 0.00022365 -0.39478 -0.00023501 -0.019078 -1.1357E-05 595.2980396357343 71.365 0.57188 74.74 74.428 75 3.3751 60 46 2 0 0 0 0.10225 2 17336 17336;17391 33.445 18.196 1 166970 25885 1078 16145 16154 30189;30190 30189 -0.00522291730840152 LTDFDIRFY 9 Unmodified _LTDFDIRFY_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MULTI-MSMS UPN47_class_I_Rep_3 4 595.80810546875 2 595.298039 1188.58152 0.45286 0.00026959 -0.39323 -0.00023409 0.059627 3.5496E-05 595.2977887539248 71.618 0.58586 74.837 74.545 75.131 3.2188 66 45 2 0 0 0 0.2924 2 17509 17509;17668 14.405 5.66 1 109070 25886 1078 16145 16154 30191;30192 30191 -0.00522291730840152 LTDFIQKY 8 Unmodified _LTDFIQKY_ 0 0 0 ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 ENST00000565738.1_1_16:75674022-75675473:-|nuORF ENST00000565738.1_1_16:75674022-75675473:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 514.2765502929688 2 514.276575 1026.5386 0.07858 4.0412E-05 -0.12606 -6.4828E-05 -0.047477 -2.4416E-05 514.2764470862962 48.847 0.58481 52.509 52.172 52.757 3.662 51 37 2 0 0 0 0.82752 1 10608 10608 13.906 3.0821 1 99100 25887 1007 16146 16155 30193 30193 0.026389382117031346 LTDFIQKY 8 Unmodified _LTDFIQKY_ 0 0 0 ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 ENST00000565738.1_1_16:75674022-75675473:-|nuORF ENST00000565738.1_1_16:75674022-75675473:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 514.2759399414062 2 514.276575 1026.5386 0.054891 2.8229E-05 0.18271 9.3965E-05 0.2376 0.00012219 514.276619874109 49.136 0.53931 52.483 52.245 52.784 3.3465 57 37 2 0 0 0 0.82752 1 10714 10714 24.021 9.1823 1 103370 25888 1007 16146 16155 30194 30194 0.026389382117031346 LTDFIQKY 8 Unmodified _LTDFIQKY_ 0 0 0 ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 ENST00000565738.1_1_16:75674022-75675473:-|nuORF ENST00000565738.1_1_16:75674022-75675473:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 514.276611328125 2 514.276575 1026.5386 0.27847 0.00014321 -0.10827 -5.5679E-05 0.17021 8.7534E-05 514.2765161027373 49.277 0.48227 52.512 52.291 52.774 3.2345 48 29 2 0 0 0 0.82752 1 10814 10814 34.402 2.0962 1 104080 25889 1007 16146 16155 30195 30195 0.026389382117031346 LTDFSLLRH 9 Unmodified _LTDFSLLRH_ 0 0 0 L1MB3_dup16942|chr22:19078674-19079136:-|1.047981950645678|0.0113164242067951|6.53|151.0|30|3|anti-sense L1MB3_dup16942|chr22:19078674-19079136:-|1.047981950645678|0.0113164242067951|6.53|151.0|30|3|anti-sense L1MB3_dup16942|chr22:19078674-19079136:-|1.047981950645678|0.0113164242067951|6.53|151.0|30|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 550.7720947265625 2 551.306198 1100.59784 0.37966 0.00020931 -0.21763 -0.00011998 0.16203 8.933E-05 551.3058374839629 56.833 0.32886 60.005 59.719 60.048 3.1721 29 20 2 0 0 0 0.11705 1 13064 13064 10.824 3.5347 1 109040 25890 10377 16147 16156 30196 30196 0.051568342258860866 LTDGLISGH 9 Unmodified _LTDGLISGH_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-MSMS UPN47_class_I_Rep_1 2 456.7428894042969 2 456.742899 911.471246 -0.34086 -0.00015568 0.0058511 2.6725E-06 -0.33501 -0.00015301 456.7427937267132 38.26 0.67494 41.925 41.645 42.32 3.6652 91 53 2 0 0 0 0.26948 1 7302 7302 15.847 0 1 196130 + 25891 20865 16148 16157 30197 30197 0.011969080007816046 LTDGLISGH 9 Unmodified _LTDGLISGH_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-MSMS UPN47_class_I_Rep_2 3 456.74261474609375 2 456.742899 911.471246 -0.4841 -0.00022111 0.15915 7.269E-05 -0.32496 -0.00014842 456.74286881643627 38.54 0.7317 41.928 41.655 42.386 3.3879 112 56 3 0 0 0 0.15122 2 7506 7506;7547 25.399 0 1 163130 + 25892 20865 16148 16157 30198;30199 30198 0.011969080007816046 LTDGLISGH 9 Unmodified _LTDGLISGH_ 0 0 0 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14 MULTI-MSMS UPN47_class_I_Rep_3 4 456.74267578125 2 456.742899 911.471246 -0.66702 -0.00030466 0.25389 0.00011596 -0.41313 -0.00018869 456.7429284918683 38.639 0.72149 41.88 41.62 42.341 3.2414 100 54 2 0 0 0 0.20276 4 7533 7493;7533;7626;7663 20.454 0 1 153770 + 25893 20865 16148 16157 30200;30201;30202;30203 30201 0.011969080007816046 LTDGRPWR 8 Unmodified _LTDGRPWR_ 0 0 0 REV__MER20_dup8325|chrX:2693814-2694016:+|1.7121580386798292|0.0088687140589472|7.59|151.0|1|1|sense REV__MER20_dup8325|chrX:2693814-2694016:+|1.7121580386798292|0.0088687140589472|7.59|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 500.7680358886719 2 500.769783 999.525013 NaN NaN NaN NaN NaN NaN NaN 31.714 1 35.443 34.943 35.943 3.7293 0 0 0 0.4044 1 5360 5360 4.756 0 1 + 25894 31160 16149 16158 30204 30204 0.025231252231378676 LTDIFTSVY 9 Unmodified _LTDIFTSVY_ 0 0 0 nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 MULTI-MSMS UPN47_class_I_Rep_1 2 529.7739868164062 2 529.773865 1057.53318 0.35629 0.00018875 -0.1112 -5.891E-05 0.24509 0.00012984 529.773718750442 76.636 0.78036 80.051 79.744 80.524 3.4149 193 72 3 0 0 0 0.012845 6 18956 18918;18956;18994;19030;19067;19103 68.081 33.978 1 643560 25895 3631 16150 16159 30205;30206;30207;30208;30209;30210 30206 0.006712146292329635 LTDIFTSVY 9 Unmodified _LTDIFTSVY_ 0 0 0 nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 MULTI-MSMS UPN47_class_I_Rep_1 2 529.7744140625 2 529.773865 1057.53318 0.35851 0.00018993 3.2811 0.0017382 3.6396 0.0019282 529.7740107591732 77.143 0.071663 80.558 80.538 80.61 3.4149 6 4 2 0 0 0 0.11683 1 19132 19132 30.637 10.183 1 96306 25896 3631 16150 16159 30211 30211 0.006712146292329635 LTDIFTSVY 9 Unmodified _LTDIFTSVY_ 0 0 0 nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 MULTI-MSMS UPN47_class_I_Rep_2 3 529.7738647460938 2 529.773865 1057.53318 0.24917 0.00013201 0.047212 2.5012E-05 0.29638 0.00015702 529.7737376738229 76.863 0.76953 80.195 79.828 80.597 3.3315 191 79 3 0 0 0 0.0064938 6 19031 18962;18996;19031;19069;19106;19150 88.904 46.809 1 561150 25897 3631 16150 16159 30212;30213;30214;30215;30216;30217 30214 0.006712146292329635 LTDIFTSVY 9 Unmodified _LTDIFTSVY_ 0 0 0 nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 nc|ENSG00000152784|Q9NQV8-2|PRDM8 MULTI-MSMS UPN47_class_I_Rep_3 4 529.7739868164062 2 529.773865 1057.53318 0.39851 0.00021112 -0.069201 -3.6661E-05 0.32931 0.00017446 529.7737305366378 76.893 0.72285 80.162 79.826 80.549 3.269 189 78 3 0 0 0 0.012845 5 19100 19064;19100;19135;19167;19205 68.081 33.978 1 556940 25898 3631 16150 16159 30218;30219;30220;30221;30222 30219 0.006712146292329635 LTDQFKTSTY 10 Unmodified _LTDQFKTSTY_ 0 0 0 REV__ENST00000520626.5_1_8:22059101-22069238:+|nuORF REV__ENST00000520626.5_1_8:22059101-22069238:+|nuORF MSMS UPN47_class_I_Rep_1 2 602.2972412109375 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 70.973 1 74.346 73.846 74.846 3.373 0 0 0 0.53105 1 17277 17277 3.2813 0 1 + 25899 20274 16151 16160 30223 30223 -0.011269168016497133 LTDRELEEY 9 Unmodified _LTDRELEEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_1 2 584.2799072265625 2 584.280043 1166.54553 -0.030166 -1.7625E-05 0.10061 5.8783E-05 0.070441 4.1157E-05 584.2801668475449 40.087 0.71502 43.754 43.455 44.17 3.6668 123 51 3 0 0 0 0.038999 3 7932 7891;7932;7970 53.404 3.8497 1 323940 25900 1297 16152 16161 30224;30225;30226 30225 -0.03107793698382011 LTDRELEEY 9 Unmodified _LTDRELEEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_2 3 584.280029296875 2 584.280043 1166.54553 0.045021 2.6305E-05 0.26136 0.0001527 0.30638 0.00017901 584.2801064723828 40.405 0.75417 43.776 43.513 44.267 3.3712 115 52 3 0 0 0 0.048729 4 8065 7981;8022;8065;8108 49.527 13.021 1 287630 25901 1297 16152 16161 30227;30228;30229;30230 30229 -0.03107793698382011 LTDRELEEY 9 Unmodified _LTDRELEEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_3 4 584.2804565429688 2 584.280043 1166.54553 -0.0096882 -5.6606E-06 0.33258 0.00019432 0.32289 0.00018866 584.2800976259564 40.514 0.76446 43.751 43.471 44.236 3.2372 108 48 3 0 0 0 0.053261 3 8107 8107;8147;8186 47.594 3.822 1 275600 25902 1297 16152 16161 30231;30232;30233 30231 -0.03107793698382011 LTDRGVMSY 9 Oxidation (M) _LTDRGVM(Oxidation (M))SY_ LTDRGVM(1)SY LTDRGVM(44)SY 0 0 1 ENSG00000126456|ENST00000377139|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;nc|ENSG00000126456|Q14653-4|IRF3 ENSG00000126456|ENST00000377139|IRF3 ENSG00000126456|ENST00000377139|IRF3 MULTI-MSMS UPN47_class_I_Rep_3 4 529.2529907226562 2 529.252774 1056.491 -0.26909 -0.00014242 0.14298 7.5674E-05 -0.12611 -6.6743E-05 529.2528446077457 28.945 0.70824 32.269 31.998 32.706 3.3235 109 59 2 0 0 0 0.062142 1 4597 4597 43.772 11.467 1 141110 25903 2534 16153 16162 30234 30234 85 -0.034990840507816756 LTDRLASLY 9 Unmodified _LTDRLASLY_ 0 0 0 nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A MULTI-MSMS UPN47_class_I_Rep_2 3 526.2918701171875 2 526.292756 1050.57096 0.19377 0.00010198 -0.29141 -0.00015337 -0.097641 -5.1388E-05 526.292344037665 52.294 0.63912 55.628 55.238 55.877 3.3332 84 50 3 0 0 0 0.14216 2 11695 11613;11695 26.268 4.7312 1 276240 25904 3593 16154 16163 30235;30236 30236 0.04769725614710296 LTDRLASLY 9 Unmodified _LTDRLASLY_ 0 0 0 nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A MULTI-MSMS UPN47_class_I_Rep_3 4 526.2921752929688 2 526.292756 1050.57096 0.42424 0.00022327 -0.48863 -0.00025716 -0.064388 -3.3887E-05 526.2921161769625 52.533 0.62166 55.738 55.29 55.911 3.2055 88 55 2 0 0 0 0.15547 1 11761 11761 24.991 2.2547 1 245730 25905 3593 16154 16163 30237 30237 0.04769725614710296 LTDTWELSY 9 Unmodified _LTDTWELSY_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|70|2|sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|70|2|sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|70|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.266357421875 2 564.266404 1126.51826 0.35291 0.00019913 -0.086019 -4.8538E-05 0.26689 0.0001506 564.2662536215907 69.524 0.79693 72.892 72.572 73.369 3.3678 184 72 3 0 0 0 0.090595 1 16855 16855 36.044 3.7387 1 492350 25906 14174 16155 16164 30238 30238 -0.03994277238757604 LTDTWELSY 9 Unmodified _LTDTWELSY_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|70|2|sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|70|2|sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|70|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.2667846679688 2 564.266404 1126.51826 0.44452 0.00025083 -0.21227 -0.00011978 0.23225 0.00013105 564.2662124269827 69.768 0.82824 72.972 72.626 73.454 3.2044 170 65 3 0 0 0 0.09884 1 17088 17088 34.102 3.4659 1 621980 25907 14174 16155 16164 30239 30239 -0.03994277238757604 LTDYDIRFY 9 Unmodified _LTDYDIRFY_ 0 0 0 ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN47_class_I_Rep_1 2 603.29541015625 2 603.295496 1204.57644 0.41452 0.00025008 0.045528 2.7467E-05 0.46005 0.00027754 603.2954631058809 62.092 0.91195 65.46 65.113 66.025 3.3681 120 61 2 0 0 0 0.0055879 3 14569 14569;14607;14690 110.55 81.471 1 497180 25908 5756 16156 16165 30240;30241;30242 30240 -0.017665955934717203 LTDYDIRFY 9 Unmodified _LTDYDIRFY_ 0 0 0 ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN47_class_I_Rep_2 3 603.2955322265625 2 603.295496 1204.57644 0.44245 0.00026693 -0.12707 -7.6659E-05 0.31538 0.00019027 603.2953817110069 62.284 0.89949 65.544 65.212 66.111 3.2594 110 58 2 0 0 0 0.0055879 3 14706 14666;14706;14757 80.676 57.94 1 421330 25909 5756 16156 16165 30243;30244;30245 30244 -0.017665955934717203 LTDYDIRFY 9 Unmodified _LTDYDIRFY_ 0 0 0 ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN47_class_I_Rep_3 4 603.2957153320312 2 603.295496 1204.57644 0.40745 0.00024581 -0.084299 -5.0857E-05 0.32315 0.00019496 603.2953822766833 62.284 0.99675 65.451 65.14 66.137 3.1667 111 62 2 0 0 0 0.0055879 2 14804 14745;14804 80.676 56.655 1 443370 25910 5756 16156 16165 30246;30247 30247 -0.017665955934717203 LTDYRLFW 8 Unmodified _LTDYRLFW_ 0 0 0 REV__L1MB7_dup18394|chr15:80126322-80126831:+|2.028792853599715|0.3145249241400502|2.69|151.0|21|3|sense REV__L1MB7_dup18394|chr15:80126322-80126831:+|2.028792853599715|0.3145249241400502|2.69|151.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 557.3015747070312 2 557.290017 1112.56548 NaN NaN NaN NaN NaN NaN NaN 61.889 1 65.257 64.757 65.757 3.3681 0 0 0 0.40404 1 14542 14542 5.2307 0 1 + 25911 26113 16157 16166 30248 30248 0.013700468228989848 LTECHKWINYF 11 Unmodified _LTECHKWINYF_ 0 0 0 REV__ENST00000461436.1_1_3:152019768-152019942:+|nuORF REV__ENST00000461436.1_1_3:152019768-152019942:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 485.57098388671875 3 485.235945 1452.68601 -0.41626 -0.00020198 0.45566 0.0002211 0.039399 1.9118E-05 485.23596768988784 34.797 0.15575 38.061 38.007 38.162 3.2639 26 14 3 0 0 0 0.64031 1 6365 6365 4.1166 0 1 98768 + 25912 22435 16158 16167 30249 30249 -0.022229132457823653 LTEEDHDD 8 Unmodified _LTEEDHDD_ 0 0 0 nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 MULTI-MSMS UPN47_class_I_Rep_2 3 487.1910095214844 2 487.190894 972.367234 -0.1458 -7.1034E-05 0.864 0.00042093 0.7182 0.0003499 487.191204782834 37.909 0.55702 41.297 41.042 41.599 3.3879 74 43 2 0 0 0 0.82752 1 7280 7280 12.532 1.7076 1 104710 25913 4683 16159 16168 30250 30250 -0.12005463617424539 LTEEKESIY 9 Unmodified _LTEEKESIY_ 0 0 0 REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 556.278564453125 2 556.279512 1110.54447 -0.027228 -1.5146E-05 -0.40964 -0.00022787 -0.43686 -0.00024302 556.2792226399233 34.799 0.56809 38.485 38.195 38.763 3.6859 57 46 2 0 0 0 0.15547 2 6296 6296;6307 24.991 0 1 135870 + 25914 22639 16160 16169 30251;30252 30251 -0.006380080672670374 LTEEKESIY 9 Unmodified _LTEEKESIY_ 0 0 0 REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 556.2811279296875 2 556.279512 1110.54447 0.045641 2.5389E-05 -0.30926 -0.00017204 -0.26362 -0.00014665 556.2793473007197 34.969 0.5209 38.394 38.124 38.644 3.4253 64 38 2 0 0 0 0.35123 2 6434 6411;6434 10.8 0 1 83227 + 25915 22639 16160 16169 30253;30254 30254 -0.006380080672670374 LTEEKESIY 9 Unmodified _LTEEKESIY_ 0 0 0 REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF REV__ENST00000492304.1_1_1:150123092-150125090:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 556.2781982421875 2 556.279512 1110.54447 -0.10938 -6.0846E-05 -0.41596 -0.00023139 -0.52534 -0.00029223 556.2792579727427 35.146 0.59858 38.41 38.146 38.744 3.2639 66 41 2 0 0 0 0.11355 2 6506 6479;6506 31.268 0 1 99604 + 25916 22639 16160 16169 30255;30256 30256 -0.006380080672670374 LTEKLFRKV 9 Unmodified _LTEKLFRKV_ 0 0 0 L1MEi_dup1015|chr3:43306437-43307305:-|1.1344363006149338|0.0780167408610864|3.86|151.0|39|1|anti-sense L1MEi_dup1015|chr3:43306437-43307305:-|1.1344363006149338|0.0780167408610864|3.86|151.0|39|1|anti-sense L1MEi_dup1015|chr3:43306437-43307305:-|1.1344363006149338|0.0780167408610864|3.86|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_1 5 567.355224609375 2 567.355691 1132.69683 NaN NaN NaN NaN NaN NaN NaN 88.159 1 91.782 91.282 92.282 3.6229 0 0 0 0.4007 1 21144 21144 0.52476 0 1 25917 13446 16161 16170 30257 30257 0.135788571907824 LTEKLIDVG 9 Unmodified _LTEKLIDVG_ 0 0 0 REV__Tigger19a_dup153|chr1:113970280-113970518:-|1.5807966303492669|0.121989849457946|3.7|150.0|16|2|anti-sense REV__Tigger19a_dup153|chr1:113970280-113970518:-|1.5807966303492669|0.121989849457946|3.7|150.0|16|2|anti-sense MSMS UPN47_class_I_Rep_3 4 494.2896728515625 2 494.289682 986.564812 NaN NaN NaN NaN NaN NaN NaN 52.741 1 55.938 55.438 56.438 3.1977 0 0 0 0.35339 1 11841 11841 7.9102 0.62092 1 + 25918 32615 16162 16171 30258 30258 0.07099207383191697 LTELAPKL 8 Unmodified _LTELAPKL_ 0 0 0 REV__ENSG00000165644|ENST00000372538|COMTD1 REV__ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS UPN48_class_I_Rep_1 5 442.77606201171875 2 442.776211 883.537869 0.060979 2.7E-05 0.28536 0.00012635 0.34634 0.00015335 442.7762831816933 56.471 0.52519 59.973 59.7 60.225 3.5014 55 43 2 0 0 0 0.82752 1 12104 12104 2.3027 0 1 171260 + 25919 20128 16163 16172 30259 30259 0.09144143562662066 LTELPDWSY 9 Unmodified _LTELPDWSY_ 0 0 0 ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52 ENST00000557543.5_1_14:23299153-23299471:+|nuORF ENST00000557543.5_1_14:23299153-23299471:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 562.26904296875 2 562.268947 1122.52334 0.37898 0.00021309 -0.11387 -6.4028E-05 0.26511 0.00014906 562.2689437720378 73.074 0.75638 76.457 76.118 76.874 3.3825 112 54 3 0 0 0 0.027484 4 17954 17856;17902;17954;17995 58.679 58.679 1 261220 25920 4583 16164 16173 30260;30261;30262;30263 30262 -0.033019733761420866 LTELPDWSY 9 Unmodified _LTELPDWSY_ 0 0 0 ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52 ENST00000557543.5_1_14:23299153-23299471:+|nuORF ENST00000557543.5_1_14:23299153-23299471:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.268798828125 2 562.268947 1122.52334 0.43768 0.00024609 -0.21844 -0.00012282 0.21923 0.00012327 562.2688376280507 73.229 0.70726 76.526 76.192 76.899 3.2971 129 56 3 0 0 0 0.047711 5 18008 17919;17960;18008;18049;18054 49.933 36.891 1 199340 25921 4583 16164 16173 30264;30265;30266;30267;30268 30266 -0.033019733761420866 LTELPDWSY 9 Unmodified _LTELPDWSY_ 0 0 0 ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52 ENST00000557543.5_1_14:23299153-23299471:+|nuORF ENST00000557543.5_1_14:23299153-23299471:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 562.269287109375 2 562.268947 1122.52334 0.45259 0.00025448 -0.14304 -8.0428E-05 0.30955 0.00017405 562.2688731007258 73.242 0.65395 76.469 76.173 76.827 3.2271 104 55 2 0 0 0 0.0070866 6 18083 17999;18038;18045;18083;18119;18160 71.922 53.776 1 222590 25922 4583 16164 16173 30269;30270;30271;30272;30273;30274 30272 -0.033019733761420866 LTELPPLDDY 10 Unmodified _LTELPPLDDY_ 0 0 0 nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2;ENST00000587353.5_1_18:45394679-45413284:-|nuORF nc|ENSG00000175387|Q15796-2|SMAD2 nc|ENSG00000175387|Q15796-2|SMAD2 MSMS UPN47_class_I_Rep_1 2 588.294189453125 2 588.295162 1174.57577 NaN NaN NaN NaN NaN NaN NaN 71.325 1 74.701 74.201 75.201 3.3751 0 0 0 0.53105 1 17383 17383 5.7319 3.6721 1 25923 4721 16165 16174 30275 30275 -0.004534350331823589 LTELYWNTY 9 Unmodified _LTELYWNTY_ 0 0 0 REV__ENSG00000061676|ENST00000361354|NCKAP1 REV__ENSG00000061676|ENST00000361354|NCKAP1 MSMS UPN47_class_I_Rep_3 4 601.7876586914062 2 601.790047 1201.56554 NaN NaN NaN NaN NaN NaN NaN 70.81 1 74.021 73.521 74.521 3.2113 0 0 0 0.39518 1 17343 17343 1.8442 0.19162 1 + 25924 17727 16166 16175 30276 30276 -0.02717997967761221 LTESHIVI 8 Unmodified _LTESHIVI_ 0 0 0 REV__L1MDb_dup816|chr11:14784200-14784698:+|1.1492057069801669|0.0514451676890317|4.48|151.0|5|1|sense REV__L1MDb_dup816|chr11:14784200-14784698:+|1.1492057069801669|0.0514451676890317|4.48|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.26324462890625 2 456.263468 910.512382 -0.24061 -0.00010978 0.32572 0.00014862 0.085114 3.8835E-05 456.26350685802765 56.965 0.91532 60.137 59.779 60.694 3.1721 174 76 3 0 0 0 0.82752 1 13229 13229 26.341 0 1 705610 + 25925 27556 16167 16176 30277 30277 0.053546690402299646 LTESRGPLSV 10 Unmodified _LTESRGPLSV_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MULTI-MSMS UPN47_class_I_Rep_1 2 529.7951049804688 2 529.795663 1057.57677 0.32287 0.00017106 -0.13232 -7.0104E-05 0.19055 0.00010095 529.7951061518609 56.553 0.51968 60.01 59.692 60.212 3.4572 45 33 2 0 0 0 0.42663 1 12939 12939 17.443 0.32975 1 187850 25926 2569 16168 16177 30278 30278 0.05028824126384279 LTESRGPLSV 10 Unmodified _LTESRGPLSV_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 529.795663 1057.57677 0.32287 0.00017106 -0.13232 -7.0104E-05 0.19055 0.00010095 529.7951061518609 56.553 0.51968 60.01 59.692 60.212 3.4572 -0.11472 -3.1883E-05 NaN 17.443 45 33 2 NaN NaN NaN NaN 0 NaN NaN 0 187850 25927 2569 16168 16177 0.05028824126384279 LTESRGPLSV 10 Unmodified _LTESRGPLSV_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 529.795663 1057.57677 0.29349 0.00015549 0.89732 0.00047539 1.1908 0.00063089 529.7964431440383 56.939 0.038097 60.24 60.208 60.247 3.3009 0.11472 0.0010591 NaN 17.443 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 66428 25928 2569 16168 16177 0.05028824126384279 LTFETASSFY 10 Unmodified _LTFETASSFY_ 0 0 0 L1M5_dup46627|chr16:29127098-29127428:+|1.4697728438935491|0.1654244719006071|3.15|151.0|23|2|anti-sense L1M5_dup46627|chr16:29127098-29127428:+|1.4697728438935491|0.1654244719006071|3.15|151.0|23|2|anti-sense L1M5_dup46627|chr16:29127098-29127428:+|1.4697728438935491|0.1654244719006071|3.15|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_2 3 583.2978515625 2 583.274229 1164.53391 NaN NaN NaN NaN NaN NaN NaN 53.617 1 56.944 56.444 57.444 3.3266 0 0 0 0.53105 1 12055 12055 3.5965 0.70727 1 25929 9179 16169 16178 30279 30279 -0.04177990721700553 LTFKYKGRKQ 10 Unmodified _LTFKYKGRKQ_ 0 0 0 L1M8_dup976|chr9:88459580-88460438:-|2.256633146463289|0.4854854480060327|2.22|151.0|39|3|sense L1M8_dup976|chr9:88459580-88460438:-|2.256633146463289|0.4854854480060327|2.22|151.0|39|3|sense L1M8_dup976|chr9:88459580-88460438:-|2.256633146463289|0.4854854480060327|2.22|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 634.8781127929688 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 107.09 1 110.76 110.26 111.26 3.6724 0 0 0 0.53105 1 26235 26235 3.2813 0 1 25930 9255 16170 16179 30280 30280 0.11693046968093768 LTFLGEGKY 9 Unmodified _LTFLGEGKY_ 0 0 0 L1MC1_dup7132|chr8:144750012-144750846:-|3.119680576151452|0.4006023584430365|2.96|151.0|13|2|sense L1MC1_dup7132|chr8:144750012-144750846:-|3.119680576151452|0.4006023584430365|2.96|151.0|13|2|sense L1MC1_dup7132|chr8:144750012-144750846:-|3.119680576151452|0.4006023584430365|2.96|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.7877807617188 2 514.276575 1026.5386 0.07858 4.0412E-05 -0.12606 -6.4828E-05 -0.047477 -2.4416E-05 514.2764470862962 48.847 0.58481 52.509 52.172 52.757 3.662 51 37 2 0 0 0 0.47763 1 10591 10591 2.9952 0.69251 1 99100 25931 11187 16171 16180 30281 30281 0.026389382117031346 LTFSANIPVV 10 Unmodified _LTFSANIPVV_ 0 0 0 REV__L1PA5_dup4179|chr6:1676019-1677956:+|1.5775714030135537|0.0455849722196457|5.11|151.0|74|2|anti-sense REV__L1PA5_dup4179|chr6:1676019-1677956:+|1.5775714030135537|0.0455849722196457|5.11|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_3 4 530.8048095703125 2 530.8055 1059.59645 NaN NaN NaN NaN NaN NaN NaN 60.642 1 63.807 63.307 64.307 3.1651 0 0 0 0.53105 1 14254 14254 2.4985 0.65425 1 + 25932 29759 16172 16181 30282 30282 0.0690320013713972 LTFSHSTLTD 10 Unmodified _LTFSHSTLTD_ 0 0 0 REV__ENSG00000145623|ENST00000274276|OSMR REV__ENSG00000145623|ENST00000274276|OSMR MULTI-MSMS UPN47_class_I_Rep_2 3 561.2775268554688 2 561.277303 1120.54005 0.17266 9.6909E-05 -0.17847 -0.00010017 -0.0058081 -3.26E-06 561.2770810547216 44.306 0.5509 47.661 47.377 47.927 3.3556 48 35 2 0 0 0 0.56333 1 9214 9214 1.4819 0 1 110100 + 25933 19517 16173 16182 30283 30283 -0.015394724901852896 LTFSLAAALG 10 Unmodified _LTFSLAAALG_ 0 0 0 REV__nc|ENSG00000122136|Q9NY56-3|OBP2A REV__nc|ENSG00000122136|Q9NY56-3|OBP2A MSMS UPN47_class_I_Rep_1 2 482.27886962890625 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 76.409 1 79.824 79.324 80.324 3.4149 0 0 0 0.53105 1 18908 18908 3.5965 0 1 + 25934 18741 16174 16183 30284 30284 0.06091242074319325 LTFSTEFYE 9 Unmodified _LTFSTEFYE_ 0 0 0 REV__ENST00000565421.1_1_16:53404024-53404910:-|nuORF REV__ENST00000565421.1_1_16:53404024-53404910:-|nuORF MSMS UPN47_class_I_Rep_3 4 569.248291015625 2 568.760955 1135.50736 NaN NaN NaN NaN NaN NaN NaN 28.204 1 31.538 31.038 32.038 3.3337 0 0 0 0.39428 1 4390 4390 2.0598 0 1 + 25935 23060 16175 16184 30285 30285 -0.05497679613040418 LTFTEATIL 9 Unmodified _LTFTEATIL_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-MSMS UPN48_class_I_Rep_1 5 504.78436279296875 2 504.784233 1007.55391 0.24941 0.0001259 0.095403 4.8158E-05 0.34481 0.00017406 504.78417329847116 72.282 0.76809 75.755 75.419 76.187 3.4732 140 68 3 0 0 0 0.035561 1 16922 16922 54.774 0 1 564150 + 25936 18421 16176 16185 30286 30286 0.050438050089155695 LTFTEATIL 9 Unmodified _LTFTEATIL_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-MATCH UPN48_class_I_Rep_2 6 2 504.784233 1007.55391 0.29584 0.00014934 -0.036876 -1.8614E-05 0.25897 0.00013072 504.78410657595765 72.085 0.62611 75.635 75.364 75.99 3.5505 -0.17997 -6.7271E-05 NaN 54.774 140 65 3 NaN NaN NaN NaN 0 NaN NaN 0 233120 + 25937 18421 16176 16185 0.050438050089155695 LTFTEATIL 9 Unmodified _LTFTEATIL_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-MATCH UPN48_class_I_Rep_3 7 2 504.784233 1007.55391 0.32128 0.00016218 -0.55412 -0.00027971 -0.23284 -0.00011753 504.78381136574023 72.519 0.15598 76.056 75.996 76.152 3.5373 0.24052 -0.00058946 NaN 54.774 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 40957 + 25938 18421 16176 16185 0.050438050089155695 LTFTKGTVF 9 Unmodified _LTFTKGTVF_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|89|1|anti-sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|89|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.2864685058594 2 507.286943 1012.55933 0.21643 0.00010979 -0.23983 -0.00012166 -0.023394 -1.1868E-05 507.2864412542909 108.77 0.31013 112.4 112.25 112.56 3.6321 76 34 3 0 0 0 0.43982 1 26323 26323 5.7319 0.50118 1 6114700 + 25939 23591 16177 16186 30287 30287 0.05355528591371694 LTFTKGWLSSP 11 Unmodified _LTFTKGWLSSP_ 0 0 0 ENST00000330714.7_1_21:42780169-42780397:+|nuORF ENST00000330714.7_1_21:42780169-42780397:+|nuORF ENST00000330714.7_1_21:42780169-42780397:+|nuORF MSMS UPN48_class_I_Rep_1 5 618.8326416015625 2 618.834788 1235.65502 NaN NaN NaN NaN NaN NaN NaN 47.126 1 50.647 50.147 51.147 3.5213 0 0 0 0.38417 1 9278 9278 1.0715 0.46996 1 25940 6184 16178 16187 30288 30288 0.04662256711617374 LTFTTYITTT 10 Unmodified _LTFTTYITTT_ 0 0 0 REV__MER2_dup3482|chr6:37865199-37865446:-|1.3630694893677595|0.0042610709418394|8.32|151.0|2|1|sense REV__MER2_dup3482|chr6:37865199-37865446:-|1.3630694893677595|0.0042610709418394|8.32|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.8065795898438 2 581.305529 1160.59651 0.36225 0.00021058 1.619 0.00094115 1.9813 0.0011517 581.3067391906808 59.83 0.60561 62.995 62.775 63.38 3.1651 60 39 2 0 0 0 0.56078 1 13966 13966 3.2813 0.54611 1 90104 + 25941 31144 16179 16188 30289 30289 0.022631553464634635 LTGFKLRF 8 Unmodified _LTGFKLRF_ 0 0 0 MER21A_dup192|chr2:48496765-48497350:+|1.7739030615424336|0.3874903431073234|2.19|151.0|33|2|anti-sense MER21A_dup192|chr2:48496765-48497350:+|1.7739030615424336|0.3874903431073234|2.19|151.0|33|2|anti-sense MER21A_dup192|chr2:48496765-48497350:+|1.7739030615424336|0.3874903431073234|2.19|151.0|33|2|anti-sense MSMS UPN48_class_I_Rep_1 5 491.2989501953125 2 491.297645 980.580737 NaN NaN NaN NaN NaN NaN NaN 106.72 1 110.35 109.85 110.85 3.6299 0 0 0 0.4044 1 25709 25709 4.756 0 1 25942 15853 16180 16189 30290 30290 0.08966958410769621 LTGKDVNFEF 10 Unmodified _LTGKDVNFEF_ 0 0 0 ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENSG00000171863|ENST00000645674|RPS7 ENST00000484240.1_1_17:44798950-44799232:-|nuORF ENST00000484240.1_1_17:44798950-44799232:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 585.2949829101562 2 585.295496 1168.57644 0.3426 0.00020052 0.10113 5.9188E-05 0.44373 0.00025971 585.2956798310167 55.445 0.54298 58.924 58.581 59.124 3.4785 53 32 2 0 0 0 0.42663 3 12519 12519;12561;12574 17.443 5.8023 1 114300 25943 4551 16181 16190 30291;30292;30293 30291 -0.001105955934690428 LTGKDVNFEF 10 Unmodified _LTGKDVNFEF_ 0 0 0 ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENSG00000171863|ENST00000645674|RPS7 ENST00000484240.1_1_17:44798950-44799232:-|nuORF ENST00000484240.1_1_17:44798950-44799232:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 585.2952880859375 2 585.295496 1168.57644 0.51786 0.0003031 0.037386 2.1882E-05 0.55525 0.00032498 585.2955692952096 55.585 0.5381 58.895 58.623 59.161 3.3102 51 29 2 0 0 0 0.48801 1 12681 12681 12.873 5.2637 1 118880 25944 4551 16181 16190 30294 30294 -0.001105955934690428 LTGKDVNFEF 10 Unmodified _LTGKDVNFEF_ 0 0 0 ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENSG00000171863|ENST00000645674|RPS7 ENST00000484240.1_1_17:44798950-44799232:-|nuORF ENST00000484240.1_1_17:44798950-44799232:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 585.2953491210938 2 585.295496 1168.57644 0.41699 0.00024406 0.45689 0.00026742 0.87388 0.00051148 585.2959051705534 55.762 0.53954 58.94 58.665 59.205 3.1779 65 35 2 0 0 0 0.48801 2 12756 12756;12798 12.873 5.2637 1 107630 25945 4551 16181 16190 30295;30296 30295 -0.001105955934690428 LTGLHLDKQ 9 Unmodified _LTGLHLDKQ_ 0 0 0 REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|145|3|sense REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|145|3|sense MSMS UPN47_class_I_Rep_2 3 512.7923583984375 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 53.019 1 56.346 55.846 56.846 3.3266 0 0 0 0.3377 1 11871 11871 8.7454 0.15213 1 + 25946 30309 16182 16191 30297 30297 0.060451453345763184 LTGRVLVVLVF 11 Unmodified _LTGRVLVVLVF_ 0 0 0 nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 MSMS UPN48_class_I_Rep_1 5 406.2330322265625 3 405.932303 1214.77508 NaN NaN NaN NaN NaN NaN NaN 35.994 1 39.504 39.004 40.004 3.5101 0 0 0 0.38417 1 5959 5959 1.4551 0.67859 1 25947 3720 16183 16192 30298 30298 0.17628289776030215 LTGVPPEVR 9 Unmodified _LTGVPPEVR_ 0 0 0 HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|270|2|anti-sense;HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|85|2|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|270|2|anti-sense HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|270|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 483.6002197265625 2 484.282192 966.549831 0.19229 9.312E-05 3.0272 0.001466 3.2195 0.0015591 484.28239717670965 56.807 0.1135 56.807 56.751 56.864 0 16 12 3 0 0 0 0.12235 1 12406 12406 4.756 0 1 136360 25948 8068 16184 16193 30299 30299 0.06521760305861335 LTGVRFKAQ 9 Unmodified _LTGVRFKAQ_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN46_class_I_Rep_3 1 510.303466796875 2 510.303458 1018.59236 0.31885 0.00016271 -2.0305 -0.0010362 -1.7116 -0.00087345 510.3023537806305 107.99 0.41071 107.99 107.91 108.32 0 66 34 3 0 0 0 0.41259 1 26451 26451 7.2892 0.56607 1 62658000 25949 3242 16185 16194 30300 30300 0.08381155434096854 LTGVRGCLIVF 11 Unmodified _LTGVRGCLIVF_ 0 0 0 L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|176|3|anti-sense L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|176|3|anti-sense L1MA6_dup2198|chr6:127367918-127370769:-|1.0260996246817558|0.214338214101966|2.26|150.0|176|3|anti-sense MSMS UPN47_class_I_Rep_3 4 589.343017578125 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 84.481 1 87.843 87.343 88.343 3.3615 0 0 0 0.38417 1 21204 21204 1.0715 0 1 25950 9970 16186 16195 30301 30301 0.08763210939059718 LTGVRRCL 8 Unmodified _LTGVRRCL_ 0 0 0 L1MA3_dup7162|chr13:72881739-72883458:+|1.7401585334142755|0.0261413256528271|6.06|151.0|76|2|anti-sense L1MA3_dup7162|chr13:72881739-72883458:+|1.7401585334142755|0.0261413256528271|6.06|151.0|76|2|anti-sense L1MA3_dup7162|chr13:72881739-72883458:+|1.7401585334142755|0.0261413256528271|6.06|151.0|76|2|anti-sense MSMS UPN48_class_I_Rep_1 5 459.2800598144531 2 459.271104 916.527655 NaN NaN NaN NaN NaN NaN NaN 60.893 1 64.367 63.867 64.867 3.4737 0 0 0 0.40604 1 13507 13507 2.5775 0 1 25951 9619 16187 16196 30302 30302 0.06605257356443417 LTHFDGVI 8 Unmodified _LTHFDGVI_ 0 0 0 REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|81|2|sense REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|81|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 451.2422180175781 2 451.242535 900.470518 -0.54669 -0.00024669 0.019292 8.7053E-06 -0.5274 -0.00023798 451.24249865937685 40 0.62627 43.371 43.157 43.783 3.3712 56 42 2 0 0 0 0.82752 1 7901 7901 9.3474 0 1 69515 + 25952 30081 16188 16197 30303 30303 0.016301133517231392 LTHFMMPV 8 Unmodified _LTHFMMPV_ 0 0 0 L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|153|3|sense;L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|56|3|sense L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|153|3|sense L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|153|3|sense MSMS UPN47_class_I_Rep_1 2 488.2445373535156 2 488.243166 974.47178 NaN NaN NaN NaN NaN NaN NaN 37.417 1 41.082 40.582 41.582 3.6652 0 0 0 0.40738 1 7097 7097 0.79363 0 1 25953 10622 16189 16198 30304 30304 -0.016477118753869036 LTHITTWIY 9 Unmodified _LTHITTWIY_ 0 0 0 L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|6|2|sense L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|6|2|sense L1MB8_dup4119|chr4:139174246-139174532:+|1.6229988096497112|0.0079881433391772|7.67|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 574.3098754882812 2 574.310949 1146.60735 NaN NaN NaN NaN NaN NaN NaN 62.603 1 66.077 65.577 66.577 3.4738 0 0 0 0.38478 1 14005 14005 4.3292 0.38484 1 25954 11004 16190 16199 30305 30305 0.03990602511430552 LTHMWELKKV 10 Unmodified _LTHMWELKKV_ 0 0 0 L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 642.8617553710938 2 642.860283 1283.70601 NaN NaN NaN NaN NaN NaN NaN 106.5 1 110.13 109.63 110.63 3.6299 0 0 0 0.53105 1 25657 25657 3.5965 0.60125 1 25955 9687 16191 16200 30306 30306 0.07550882484770227 LTHQDSIK 8 Unmodified _LTHQDSIK_ 0 0 0 REV__nc|ENSG00000136492|Q9BX63-2|BRIP1 REV__nc|ENSG00000136492|Q9BX63-2|BRIP1 MSMS UPN48_class_I_Rep_1 5 471.255859375 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 24.739 1 28.305 27.805 28.805 3.5667 0 0 0 0.3903 1 2775 2775 11.64 0 1 + 25956 19185 16192 16201 30307 30307 0.025165968920873638 LTHRPLPLTVV 11 Unmodified _LTHRPLPLTVV_ 0 0 0 MLT1A_dup8880|chr22:23279799-23280175:-|1.5968329131001384|0.0397553394117236|5.33|151.0|19|2|anti-sense MLT1A_dup8880|chr22:23279799-23280175:-|1.5968329131001384|0.0397553394117236|5.33|151.0|19|2|anti-sense MLT1A_dup8880|chr22:23279799-23280175:-|1.5968329131001384|0.0397553394117236|5.33|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_1 5 623.3899536132812 2 623.387522 1244.76049 NaN NaN NaN NaN NaN NaN NaN 104.45 1 108.07 107.57 108.57 3.6247 0 0 0 0.38417 1 25163 25163 2.9952 1.5133 1 25957 16244 16193 16202 30308 30308 0.14790217627864877 LTHTGKERCR 10 Unmodified _LTHTGKERCR_ 0 0 0 REV__L1MA7_dup7460|chr16:23850663-23852675:-|6.53033203180188|0.0345631697870924|7.56|151.0|44|2|sense REV__L1MA7_dup7460|chr16:23850663-23852675:-|6.53033203180188|0.0345631697870924|7.56|151.0|44|2|sense MSMS UPN47_class_I_Rep_2 3 600.8158569335938 2 600.816938 1199.61932 NaN NaN NaN NaN NaN NaN NaN 26.916 1 30.415 29.915 30.915 3.4986 0 0 0 0.53105 1 3963 3963 1.6526 0.17072 1 + 25958 25527 16194 16203 30309 30309 0.02749895982947237 LTHVRVVG 8 Unmodified _LTHVRVVG_ 0 0 0 REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|27|1|anti-sense REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7996520996094 2 440.771794 879.529036 -0.68145 -0.00030037 0.47221 0.00020814 -0.20924 -9.2229E-05 440.7719973403598 28.315 0.66153 31.813 31.462 32.123 3.4986 75 58 2 0 0 0 0.82752 1 4411 4411 2.3027 0 1 40258 + 25959 24202 16195 16204 30310 30310 0.08445214716857663 LTHVRVVG 8 Unmodified _LTHVRVVG_ 0 0 0 REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|27|1|anti-sense REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 440.77166748046875 2 440.771794 879.529036 NaN NaN NaN NaN NaN NaN NaN 28.416 1 31.75 31.25 32.25 3.3337 0 0 0 0.4044 1 4453 4453 4.756 0 1 + 25960 24202 16195 16204 30311 30311 0.08445214716857663 LTHVRVVG 8 Unmodified _LTHVRVVG_ 0 0 0 REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|27|1|anti-sense REV__L1M2_dup3703|chr6:147295405-147296104:+|1.0887672735844294|0.0238812841800706|5.51|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 440.771728515625 2 440.771794 879.529036 NaN NaN NaN NaN NaN NaN NaN 28.564 1 31.898 31.398 32.398 3.3337 0 0 0 0.40625 1 4497 4497 2.3027 0 1 + 25961 24202 16195 16204 30312 30312 0.08445214716857663 LTHYSYNVV 9 Unmodified _LTHYSYNVV_ 0 0 0 REV__L1MA4A_dup5918|chr20:1484889-1485394:+|1.0876411155348007|0.0479154058391552|4.5|147.0|22|1|anti-sense REV__L1MA4A_dup5918|chr20:1484889-1485394:+|1.0876411155348007|0.0479154058391552|4.5|147.0|22|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.2764282226562 2 548.277106 1094.53966 -0.21255 -0.00011654 -0.49855 -0.00027335 -0.71111 -0.00038988 548.2767069011562 13.602 0.40154 13.602 13.451 13.853 0 81 45 2 0 0 0 0.48846 1 433 433 1.8442 0.19162 1 47730 + 25962 25339 16196 16205 30313 30313 -0.0038284741938241496 LTIALTQNKVF 11 Unmodified _LTIALTQNKVF_ 0 0 0 REV__MER85_dup690|chr13:49206341-49206468:+|1.0648767794827336|0.4219231685040852|1.34|151.0|9|2|anti-sense REV__MER85_dup690|chr13:49206341-49206468:+|1.0648767794827336|0.4219231685040852|1.34|151.0|9|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.8734741210938 2 624.371538 1246.72852 0.60521 0.00037788 0.57726 0.00036042 1.1825 0.0007383 624.3717150297052 91.242 0.89234 95.105 94.773 95.666 3.8634 233 128 2 0 0 0 0.59712 1 21632 21632 5.2969 2.0156 1 13826000 + 25963 31571 16197 16206 30314 30314 0.1150280515405484 LTIHRRKRRRS 11 Unmodified _LTIHRRKRRRS_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-3|WAPL nc|ENSG00000062650|Q7Z5K2-3|WAPL nc|ENSG00000062650|Q7Z5K2-3|WAPL MSMS UPN46_class_I_Rep_3 1 493.64508056640625 3 493.646553 1477.91783 NaN NaN NaN NaN NaN NaN NaN 36.818 1 36.818 36.318 37.318 0 0 0 0 0.38417 1 6866 6866 0.094841 0.021578 1 25964 16629 16198 16207 30315 30315 0.197987350106132 LTIIERPVR 9 Unmodified _LTIIERPVR_ 0 0 0 nc|ENSG00000119698|Q6NUP7-2|PPP4R4;ENST00000555690.5_1_14:94640802-94696957:+|nuORF;ENSG00000119698|ENST00000304338|PPP4R4 nc|ENSG00000119698|Q6NUP7-2|PPP4R4 nc|ENSG00000119698|Q6NUP7-2|PPP4R4 MULTI-MSMS UPN48_class_I_Rep_1 5 548.844970703125 2 548.84549 1095.67643 0.47421 0.00026027 0.039852 2.1872E-05 0.51407 0.00028214 548.8454015245841 51.141 1.0563 54.665 54.163 55.219 3.5246 170 73 3 0 0 0 0.32682 1 10448 10448 12.241 2.0901 1 700690 25965 2290 16199 16208 30316 30316 0.1324168653097786 LTILFLSANF 10 Unmodified _LTILFLSANF_ 0 0 0 REV__ENST00000341935.9_3_6:167536330-167536444:+|nuORF REV__ENST00000341935.9_3_6:167536330-167536444:+|nuORF MSMS UPN48_class_I_Rep_3 7 569.8296508789062 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.855 1 77.406 76.906 77.906 3.5505 0 0 0 0.53105 1 17295 17295 2.7352 0.43246 1 + 25966 21829 16200 16209 30317 30317 0.08008059688268077 LTILFLSRN 9 Unmodified _LTILFLSRN_ 0 0 0 REV__nc|ENSG00000155719|Q7RTW8|OTOA REV__nc|ENSG00000155719|Q7RTW8|OTOA MULTI-MSMS UPN48_class_I_Rep_1 5 539.3284912109375 2 538.826766 1075.63898 0.36293 0.00019556 0.0034272 1.8467E-06 0.36636 0.0001974 538.8267479239219 45.777 1.1144 49.293 48.726 49.841 3.5162 122 78 2 0 0 0 0.41259 1 8862 8862 7.2892 0 1 258240 + 25967 32020 16201 16210 30318 30318 0.1041859526535518 LTIPGQLPFL 10 Unmodified _LTIPGQLPFL_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 549.8299560546875 2 549.831517 1097.64848 NaN NaN NaN NaN NaN NaN NaN 65.664 1 69.143 68.643 69.643 3.4792 0 0 0 0.53105 1 14942 14942 10.074 2.1638 1 25968 15513 16202 16211 30319 30319 0.10356363550886272 LTIPGQLPFL 10 Unmodified _LTIPGQLPFL_ 0 0 0 LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense LTR10C_dup261|chrX:44913794-44914194:+|1.1607477345290338|0.0046372945822436|7.97|151.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 549.8294677734375 2 549.831517 1097.64848 NaN NaN NaN NaN NaN NaN NaN 65.596 1 69.104 68.604 69.604 3.5077 0 0 0 0.53105 1 14836 14836 3.5965 1.7523 1 25969 15513 16202 16211 30320 30320 0.10356363550886272 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN46_class_I_Rep_3 1 498.8036804199219 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 55.05 1 55.05 54.55 55.55 0 0 0 0 0.4044 1 11953 11953 4.756 0 1 + 25970 24875 16203 16212 30321 30321 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN47_class_I_Rep_1 2 498.80352783203125 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.177 1 52.836 52.336 53.336 3.6592 0 0 0 0.40604 1 10677 10677 2.5775 0 1 + 25971 24875 16203 16212 30322 30322 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN47_class_I_Rep_1 2 498.80377197265625 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.296 1 52.955 52.455 53.455 3.6592 0 0 0 0.4044 1 10711 10711 4.756 0 1 + 25972 24875 16203 16212 30323 30323 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.2758483886719 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.913 1 53.542 53.042 54.042 3.6285 0 0 0 0.40501 1 10899 10899 3.9444 1.6417 1 + 25973 24875 16203 16212 30324 30324 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 498.80364990234375 2 498.803094 995.591636 0.26675 0.00013305 1.3432 0.00067 1.61 0.00080306 498.80370222314696 50.93 0.51921 54.269 54.047 54.566 3.3386 44 27 3 0 0 0 0.82752 1 11229 11229 4.756 0 1 158650 + 25974 24875 16203 16212 30325 30325 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN48_class_I_Rep_2 6 498.77386474609375 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.974 1 53.669 53.169 54.169 3.6946 0 0 0 0.40604 1 10155 10155 2.5775 0 1 + 25975 24875 16203 16212 30326 30326 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN48_class_I_Rep_3 7 498.8039245605469 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.688 1 53.309 52.809 53.809 3.621 0 0 0 0.4044 1 10001 10001 4.756 0 1 + 25976 24875 16203 16212 30327 30327 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN48_class_I_Rep_3 7 498.8042907714844 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 49.843 1 53.464 52.964 53.964 3.621 0 0 0 0.40604 1 10049 10049 2.5775 0 1 + 25977 24875 16203 16212 30328 30328 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MSMS UPN48_class_I_Rep_3 7 498.7735595703125 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 50.207 1 53.828 53.328 54.328 3.621 0 0 0 0.40604 1 10161 10161 2.5775 0 1 + 25978 24875 16203 16212 30329 30329 0.09366360785043071 LTIPRLFH 8 Unmodified _LTIPRLFH_ 0 0 0 REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense REV__L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|143|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 498.803094 995.591636 0.30212 0.0001507 0.97221 0.00048494 1.2743 0.00063564 498.8035485639572 50.678 0.40569 53.894 53.726 54.131 3.2163 -0.18744 -7.8143E-05 NaN 4.756 34 22 2 NaN NaN NaN NaN 0 NaN NaN 0 289180 + 25979 24875 16203 16212 0.09366360785043071 LTIRWLPEVF 10 Unmodified _LTIRWLPEVF_ 0 0 0 REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF MSMS UPN48_class_I_Rep_2 6 637.371337890625 2 637.368798 1272.72304 NaN NaN NaN NaN NaN NaN NaN 97.96 1 101.74 101.24 102.24 3.779 0 0 0 0.53105 1 23271 23271 1.3295 0.25807 1 + 25980 22513 16204 16213 30330 30330 0.09759126362246207 LTISAATRKE 10 Unmodified _LTISAATRKE_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MULTI-MSMS UPN46_class_I_Rep_3 1 545.31689453125 2 545.316763 1088.61897 0.37939 0.00020689 0.099864 5.4458E-05 0.47926 0.00026135 545.3166858017789 84.585 0.24824 84.585 84.544 84.792 0 82 23 4 0 0 0 0.55148 1 20184 20184 5.2969 0 1 1273700 + 25981 645 16205 16214 30331 30331 0.07820799534783873 LTISRQLHLS 10 Unmodified _LTISRQLHLS_ 0 0 0 REV__MER51A_dup690|chr13:49635410-49636015:-|1.91610006915306|0.1662532312263011|3.53|151.0|9|2|sense REV__MER51A_dup690|chr13:49635410-49636015:-|1.91610006915306|0.1662532312263011|3.53|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 584.3460693359375 2 584.345855 1166.67716 NaN NaN NaN NaN NaN NaN NaN 101.6 1 105.21 104.71 105.71 3.612 0 0 0 0.53105 1 24523 24523 1.3295 0 1 + 25982 31396 16206 16215 30332 30332 0.1004848118004702 LTITKKTPRG 10 Unmodified _LTITKKTPRG_ 0 0 0 MSTA_dup18137|chr18:63229384-63229789:+|1.0923173722098376|0.0432886940853499|4.66|151.0|21|1|anti-sense MSTA_dup18137|chr18:63229384-63229789:+|1.0923173722098376|0.0432886940853499|4.66|151.0|21|1|anti-sense MSTA_dup18137|chr18:63229384-63229789:+|1.0923173722098376|0.0432886940853499|4.66|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.8505859375 2 557.850773 1113.68699 0.60588 0.00033799 -0.37758 -0.00021063 0.2283 0.00012736 557.8505495992392 54.739 0.31752 58.321 58.09 58.407 3.5817 36 21 2 0 0 0 0.54822 1 11563 11563 5.7319 0 1 144990 25983 16529 16207 16216 30333 30333 0.1346966918540602 LTIYLLYQ 8 Unmodified _LTIYLLYQ_ 0 0 0 L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|149|3|anti-sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|149|3|anti-sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|149|3|anti-sense MSMS UPN47_class_I_Rep_3 4 513.8068237304688 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 65.272 1 68.452 67.952 68.952 3.1795 0 0 0 0.40746 1 15666 15666 0.69038 0 1 25984 10043 16208 16217 30334 30334 0.067966992511856 LTKCHWILD 9 Unmodified _LTKCHWILD_ 0 0 0 REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 MSMS UPN48_class_I_Rep_2 6 564.7982177734375 2 564.797152 1127.57975 NaN NaN NaN NaN NaN NaN NaN 36.871 1 40.573 40.073 41.073 3.7021 0 0 0 0.39518 1 6243 6243 1.8442 0 1 + 25985 19963 16209 16218 30335 30335 0.021063759795197257 LTKDETIL 8 Unmodified _LTKDETIL_ 0 0 0 L1MC5_dup4819|chr5:146475727-146476619:-|1.1045649980709562|0.0915117953200685|3.59|150.0|22|2|sense L1MC5_dup4819|chr5:146475727-146476619:-|1.1045649980709562|0.0915117953200685|3.59|150.0|22|2|sense L1MC5_dup4819|chr5:146475727-146476619:-|1.1045649980709562|0.0915117953200685|3.59|150.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 466.76837158203125 2 466.768583 931.522613 0.064049 2.9896E-05 -0.21284 -9.9349E-05 -0.14879 -6.9453E-05 466.7683758535053 78.091 0.62029 81.433 81.071 81.691 3.3428 96 66 2 0 0 0 0.82752 1 19358 19358 14.838 3.198 1 199450 25986 11683 16210 16219 30336 30336 0.054112319748242044 LTKDLYLEY 9 Unmodified _LTKDLYLEY_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense;L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|23|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 579.2904052734375 2 579.308072 1156.60159 NaN NaN NaN NaN NaN NaN NaN 72.09 1 75.47 74.97 75.97 3.3799 0 0 0 0.059724 1 17618 17618 34.102 7.2188 1 25987 11990 16211 16220 30337 30337 0.02955459209078981 LTKDLYLEY 9 Unmodified _LTKDLYLEY_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense;L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|23|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 579.2901000976562 2 579.308072 1156.60159 NaN NaN NaN NaN NaN NaN NaN 72.226 1 75.606 75.106 76.106 3.3799 0 0 0 0.089203 1 17660 17660 26.884 0 1 25988 11990 16211 16220 30338 30338 0.02955459209078981 LTKDLYLEY 9 Unmodified _LTKDLYLEY_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense;L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|23|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense MSMS UPN47_class_I_Rep_2 3 579.29052734375 2 579.308072 1156.60159 NaN NaN NaN NaN NaN NaN NaN 72.322 1 75.619 75.119 76.119 3.2971 0 0 0 0.089203 1 17723 17723 26.884 0 1 25989 11990 16211 16220 30339 30339 0.02955459209078981 LTKDLYLEY 9 Unmodified _LTKDLYLEY_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense;L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|23|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense MSMS UPN47_class_I_Rep_2 3 579.2904052734375 2 579.308072 1156.60159 NaN NaN NaN NaN NaN NaN NaN 72.443 1 75.74 75.24 76.24 3.2971 0 0 0 0.059724 1 17759 17759 34.102 7.2188 1 25990 11990 16211 16220 30340 30340 0.02955459209078981 LTKDLYLEY 9 Unmodified _LTKDLYLEY_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense;L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|23|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense MSMS UPN47_class_I_Rep_2 3 579.2906494140625 2 579.308072 1156.60159 NaN NaN NaN NaN NaN NaN NaN 72.584 1 75.881 75.381 76.381 3.2971 0 0 0 0.11494 1 17800 17800 21.747 5.8995 1 25991 11990 16211 16220 30341 30341 0.02955459209078981 LTKDLYLEY 9 Unmodified _LTKDLYLEY_ 0 0 0 L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense;L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|23|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense L1ME2_dup1824|chr2:152756315-152757379:+|1.5865307106923|0.3542231613615131|2.16|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.2901000976562 2 579.308072 1156.60159 0.4533 0.0002626 -3.5707 -0.0020686 -3.1174 -0.001806 579.306642456214 72.615 0.14851 75.842 75.783 75.931 3.2271 13 12 2 0 0 0 0.09884 1 17873 17873 34.102 7.2188 1 63466 25992 11990 16211 16220 30342 30342 0.02955459209078981 LTKIHDGE 8 Unmodified _LTKIHDGE_ 0 0 0 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7427062988281 2 456.742899 911.471246 -0.66702 -0.00030466 0.25389 0.00011596 -0.41313 -0.00018869 456.7429284918683 38.639 0.72149 41.88 41.62 42.341 3.2414 100 54 2 0 0 0 0.82752 1 7667 7667 7.2892 0 1 153770 25993 5621 16212 16221 30343 30343 0.01196908000770236 LTKIQLLA 8 Unmodified _LTKIQLLA_ 0 0 0 REV__ENSG00000146411|ENST00000275230|SLC2A12 REV__ENSG00000146411|ENST00000275230|SLC2A12 MSMS UPN47_class_I_Rep_1 2 450.299072265625 2 450.299853 898.585153 NaN NaN NaN NaN NaN NaN NaN 34.034 1 37.732 37.232 38.232 3.6983 0 0 0 0.40625 1 6071 6071 2.3027 0 1 + 25994 19540 16213 16222 30344 30344 0.13180422833647754 LTKIRTEL 8 Unmodified _LTKIRTEL_ 0 0 0 L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|132|3|sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|132|3|sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|132|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.30535888671875 2 487.305667 972.596781 0.14472 7.0525E-05 -0.40401 -0.00019688 -0.25929 -0.00012635 487.3053970538631 38.311 0.52174 41.971 41.771 42.293 3.6595 63 50 2 0 0 0 0.82752 1 6517 6517 2.0598 0 1 132240 25995 13513 16214 16223 30345 30345 0.10938619856972309 LTKKEGFIP 9 Unmodified _LTKKEGFIP_ 0 0 0 ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron;ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|5|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|3|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|6|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|2|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|7|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|1|intron;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|8|intron;nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|9|intron;ENSG00000254087|ENST00000519728|LYN;ENSG00000254087.8,LYN,chr8,+,I2.1,55940328,55941854|51|20.65|4|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron ENSG00000254087.8,LYN,chr8,+,I9.1,55953985,55955095|27|16.5|3|intron MSMS UPN48_class_I_Rep_2 6 516.8063354492188 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 40.956 1 44.706 44.206 45.206 3.7508 0 0 0 0.35339 1 7430 7430 7.9102 0 1 25996 5751 16215 16224 30346 30346 0.08699503999764602 LTKKFWKWV 9 Unmodified _LTKKFWKWV_ 0 0 0 L1MB3_dup16945|chr22:19102082-19102420:+|1.0979571698923407|0.018972641847823|5.85|151.0|7|2|sense L1MB3_dup16945|chr22:19102082-19102420:+|1.0979571698923407|0.018972641847823|5.85|151.0|7|2|sense L1MB3_dup16945|chr22:19102082-19102420:+|1.0979571698923407|0.018972641847823|5.85|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 618.3692016601562 2 618.368601 1234.72265 NaN NaN NaN NaN NaN NaN NaN 83.26 1 86.966 86.466 87.466 3.7066 0 0 0 0.39518 1 19737 19737 1.8442 0 1 25997 10378 16216 16225 30347 30347 0.1146775143308787 LTKKKKKLN 9 Unmodified _LTKKKKKLN_ 0 0 0 REV__L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|96|3|sense REV__L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|96|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.8800659179688 2 550.879333 1099.74411 0.49136 0.00027068 0.30539 0.00016823 0.79675 0.00043891 550.8793408529442 108.3 0.50912 111.98 111.72 112.23 3.6746 199 59 4 0 0 0 0.5015 1 25734 25734 0.45834 0 1 29364000 + 25998 27834 16217 16226 30348 30348 0.19823136461809554 LTKKLHKYT 9 Unmodified _LTKKLHKYT_ 0 0 0 L1ME3D_dup826|chr3:72776813-72778168:+|1.1074299173853326|0.0437886820821982|4.66|151.0|31|2|sense L1ME3D_dup826|chr3:72776813-72778168:+|1.1074299173853326|0.0437886820821982|4.66|151.0|31|2|sense L1ME3D_dup826|chr3:72776813-72778168:+|1.1074299173853326|0.0437886820821982|4.66|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 566.346435546875 2 566.347866 1130.68118 NaN NaN NaN NaN NaN NaN NaN 34.778 1 34.778 34.278 35.278 0 0 0 0 0.40098 1 6251 6251 0.45834 0 1 25999 12802 16218 16227 30349 30349 0.12106570673745409 LTKLMFRHQIK 11 Unmodified _LTKLMFRHQIK_ 0 0 0 REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|60|2|sense REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|60|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.2831115722656 3 472.28323 1413.82786 0.21353 0.00010085 0.12733 6.0135E-05 0.34086 0.00016098 472.28301674583327 92.908 0.31042 96.786 96.699 97.01 3.8782 61 43 3 0 0 0 0.6724 1 22016 22016 1.2148 0 1 173110 + 26000 29193 16219 16228 30350 30350 0.13749924567196103 LTKNRRRKHLK 11 Unmodified _LTKNRRRKHLK_ 0 0 0 REV__L1PA6_dup5561|chr18:48648986-48655135:+|2.3816597906163794|0.1167381761473922|4.35|151.0|21|1|sense REV__L1PA6_dup5561|chr18:48648986-48655135:+|2.3816597906163794|0.1167381761473922|4.35|151.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 483.9817199707031 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 51.076 1 51.076 50.576 51.576 0 0 0 0 0.38417 1 10830 10830 1.1098 0.65524 1 + 26001 29942 16220 16229 30351 30351 0.20993100921850782 LTKPPKVSIKP 11 Unmodified _LTKPPKVSIKP_ 0 0 0 REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|61|2|sense REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|61|2|sense MSMS UPN47_class_I_Rep_1 2 604.3897705078125 2 604.392273 1206.76999 NaN NaN NaN NaN NaN NaN NaN 29.97 1 33.715 33.215 34.215 3.7449 0 0 0 0.38417 1 4835 4835 1.1933 0 1 + 26002 25633 16221 16230 30352 30352 0.1748798591340801 LTKRLTKL 8 Unmodified _LTKRLTKL_ 0 0 0 REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|72|2|sense REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|72|2|sense MSMS UPN47_class_I_Rep_2 3 486.8307189941406 2 486.831852 971.649151 NaN NaN NaN NaN NaN NaN NaN 72.93 1 76.227 75.727 76.727 3.2971 0 0 0 0.40404 1 17903 17903 5.2307 0 1 + 26003 29687 16222 16231 30353 30353 0.16219202990589565 LTKRTKPRVH 10 Unmodified _LTKRTKPRVH_ 0 0 0 REV__L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|4|1|sense REV__L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 618.386474609375 2 618.388388 1234.76222 NaN NaN NaN NaN NaN NaN NaN 78.419 1 81.7 81.2 82.2 3.2816 0 0 0 0.53105 1 19556 19556 3.2813 0.28607 1 + 26004 29620 16223 16232 30354 30354 0.15423271436497998 LTKVIRIYS 9 Unmodified _LTKVIRIYS_ 0 0 0 L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|34|2|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|34|2|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|34|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.84033203125 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 93.469 1 96.938 96.438 97.438 3.4687 0 0 0 0.3967 1 23064 23064 1.4819 0 1 26005 10480 16224 16233 30355 30355 0.1281116829943585 LTKVTKTR 8 Unmodified _LTKVTKTR_ 0 0 0 L1PREC2_dup1309|chr3:87937954-87939108:+|1.4162844149857283|0.0106195201616548|7.06|131.0|17|2|sense L1PREC2_dup1309|chr3:87937954-87939108:+|1.4162844149857283|0.0106195201616548|7.06|131.0|17|2|sense L1PREC2_dup1309|chr3:87937954-87939108:+|1.4162844149857283|0.0106195201616548|7.06|131.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 473.8057556152344 2 473.805834 945.597115 -0.39345 -0.00018642 0.1062 5.0317E-05 -0.28725 -0.0001361 473.80589575219227 13.982 0.76407 17.439 17.271 18.035 3.457 185 94 3 0 0 0 0.82752 1 441 441 6.7232 0 1 340810 26006 15414 16225 16234 30356 30356 0.12214039576861069 LTLAEPKRQ 9 Unmodified _LTLAEPKRQ_ 0 0 0 MER49_dup266|chr3:8885517-8886442:-|1.1686019011251478|0.2130664344645771|2.46|150.0|64|3|anti-sense MER49_dup266|chr3:8885517-8886442:-|1.1686019011251478|0.2130664344645771|2.46|150.0|64|3|anti-sense MER49_dup266|chr3:8885517-8886442:-|1.1686019011251478|0.2130664344645771|2.46|150.0|64|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 528.3146362304688 2 528.314023 1054.61349 0.41022 0.00021673 -0.56513 -0.00029857 -0.15491 -8.1842E-05 528.313724069863 89.387 0.58415 93.125 92.706 93.29 3.7379 89 63 2 0 0 0 0.50088 1 21270 21270 0.52476 0 1 136110 26007 16011 16226 16235 30357 30357 0.08837120742941806 LTLAEYHEQ 9 Unmodified _LTLAEYHEQ_ 0 0 0 nc|ENSG00000198586|Q9UKI8-2|TLK1;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|4|intron;nc|ENSG00000146872|Q86UE8|TLK2;ENSG00000198586|ENST00000431350|TLK1;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2;nc|ENSG00000198586|Q9UKI8-5|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-3|TLK1;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|5|intron;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|3|intron;ENSG00000146872.18,TLK2,chr17,+,I22.1,62580193,62585595|24|6.37|1|intron;ENSG00000198586.14,TLK1,chr2,-,I20.1,171023130,171028338|26|7.35|1|intron;ENSG00000198586.14,TLK1,chr2,-,I20.1,171023130,171028338|26|7.35|3|intron;ENST00000414066.1_1_10:38107898-38108846:-|nuORF;ENSG00000198586.14,TLK1,chr2,-,I20.1,171023130,171028338|26|7.35|2|intron nc|ENSG00000198586|Q9UKI8-2|TLK1 nc|ENSG00000198586|Q9UKI8-2|TLK1 MULTI-MSMS UPN47_class_I_Rep_3 4 552.2714233398438 2 552.272021 1102.52949 0.1741 9.6152E-05 -0.048277 -2.6662E-05 0.12582 6.9489E-05 552.2718516323188 44.137 1.04 47.381 47.01 48.05 3.2441 131 58 3 0 0 0 0.47197 1 9326 9326 3.5965 0 1 230310 26008 3451 16227 16236 30358 30358 -0.017674551446361875 LTLALANVVL 10 Unmodified _LTLALANVVL_ 0 0 0 REV__ENSG00000171209|ENST00000304954|CSN3 REV__ENSG00000171209|ENST00000304954|CSN3 MULTI-MSMS UPN48_class_I_Rep_3 7 513.83203125 2 513.831517 1025.64848 0.33562 0.00017245 0.03743 1.9233E-05 0.37305 0.00019169 513.8314935277485 62.877 0.6518 66.386 66.015 66.667 3.5091 62 44 2 0 0 0 0.53004 1 13929 13929 8.1555 0 1 150440 + 26009 20398 16228 16237 30359 30359 0.13668363550914364 LTLAPSNEYI 10 Unmodified _LTLAPSNEYI_ 0 0 0 REV__L1MEd_dup12513|chr9:129940223-129940640:+|1.2482383979821918|0.0049601927301216|7.98|151.0|36|3|anti-sense REV__L1MEd_dup12513|chr9:129940223-129940640:+|1.2482383979821918|0.0049601927301216|7.98|151.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 561.2496948242188 2 560.797872 1119.58119 0.33848 0.00018982 0.31092 0.00017436 0.6494 0.00036418 560.7980248413154 58.648 0.31787 61.814 61.624 61.942 3.1658 29 20 2 0 0 0 0.54148 1 13666 13666 6.6304 1.3335 1 79442 + 26010 28514 16229 16238 30360 30360 0.02618288549274439 LTLDTPYYF 9 Unmodified _LTLDTPYYF_ 0 0 0 nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS UPN47_class_I_Rep_1 2 566.7830200195312 2 566.78169 1131.54883 0.39709 0.00022506 0.061981 3.513E-05 0.45907 0.00026019 566.7815998714826 77.918 1.176 81.347 80.938 82.114 3.4289 333 115 4 0 0 0 0.33654 3 19494 19263;19494;19529 11.64 0 1 1144400 26011 1029 16230 16239 30361;30362;30363 30362 -0.011684988537354002 LTLDTPYYF 9 Unmodified _LTLDTPYYF_ 0 0 0 nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS UPN47_class_I_Rep_2 3 566.7833862304688 2 566.78169 1131.54883 0.48378 0.0002742 -0.02258 -1.2798E-05 0.4612 0.0002614 566.7815486929599 78.082 1.1942 81.425 81.048 82.242 3.3428 365 129 4 0 0 0 0.25207 3 19529 19309;19529;19541 16.942 0 1 1091600 26012 1029 16230 16239 30364;30365;30366 30365 -0.011684988537354002 LTLDTPYYF 9 Unmodified _LTLDTPYYF_ 0 0 0 nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 MSMS UPN47_class_I_Rep_2 3 566.7817993164062 2 566.78169 1131.54883 NaN NaN NaN NaN NaN NaN NaN 78.904 1 82.26 81.76 82.76 3.3554 0 0 0 0.36505 1 19617 19617 7.2892 0 1 26013 1029 16230 16239 30367 30367 -0.011684988537354002 LTLDTPYYF 9 Unmodified _LTLDTPYYF_ 0 0 0 nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS UPN47_class_I_Rep_3 4 566.7813110351562 2 566.78169 1131.54883 0.46529 0.00026372 -0.021655 -1.2274E-05 0.44364 0.00025144 566.7815649687917 78.134 1.2188 81.415 81.056 82.275 3.2816 378 128 4 0 0 0 0.41259 2 19661 19661;19712 7.2892 0 1 1123100 26014 1029 16230 16239 30368;30369 30368 -0.011684988537354002 LTLEFLVVG 9 Unmodified _LTLEFLVVG_ 0 0 0 REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|157|3|anti-sense REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|157|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.7958679199219 2 495.797143 989.579734 0.21899 0.00010858 -0.89544 -0.00044395 -0.67644 -0.00033538 495.7956371342942 69.441 0.27612 72.645 72.499 72.775 3.2044 27 21 2 0 0 0 0.44858 1 16931 16931 5.2307 2.9279 1 69999 + 26015 24123 16231 16240 30370 30370 0.08452699251188278 LTLEGIRQF 9 Unmodified _LTLEGIRQF_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 MSMS UPN48_class_I_Rep_1 5 538.809326171875 2 538.808574 1075.60259 NaN NaN NaN NaN NaN NaN NaN 59.49 1 62.97 62.47 63.47 3.4801 0 0 0 0.075414 1 13076 13076 29.841 8.3036 1 26016 3911;7543 16232 16241 30371 30371 0.06781718368665679 LTLEGIRQF 9 Unmodified _LTLEGIRQF_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS UPN48_class_I_Rep_2 6 538.808837890625 2 538.808574 1075.60259 0.54799 0.00029526 -0.3769 -0.00020308 0.17109 9.2187E-05 538.8083101793758 59.468 0.4657 62.955 62.575 63.041 3.4868 45 30 2 0 0 0 0.22932 3 13001 13001;13043;13054 18.373 7.5492 1 148580 26017 3911;7543 16232 16241 30372;30373;30374 30372 0.06781718368665679 LTLEGIRQF 9 Unmodified _LTLEGIRQF_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS UPN48_class_I_Rep_3 7 538.80859375 2 538.808574 1075.60259 0.52845 0.00028473 -0.3834 -0.00020658 0.14505 7.8153E-05 538.8083204891556 59.297 0.41705 62.82 62.459 62.876 3.5231 37 26 2 0 0 0 0.2924 1 12935 12935 14.405 5.0223 1 153950 26018 3911;7543 16232 16241 30375 30375 0.06781718368665679 LTLEGIRQF 9 Unmodified _LTLEGIRQF_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 538.808574 1075.60259 0.50359 0.00027134 -0.7217 -0.00038886 -0.21811 -0.00011752 538.8081478410362 59.261 0.20542 62.741 62.635 62.841 3.4801 -0.097893 -0.00028715 NaN 18.373 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 111960 26019 3911;7543 16232 16241 0.06781718368665679 LTLEKDFIY 9 Unmodified _LTLEKDFIY_ 0 0 0 REV__L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|2|1|sense REV__L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 571.3104858398438 2 571.310615 1140.60668 0.34024 0.00019438 -0.20304 -0.000116 0.1372 7.8386E-05 571.3103428505793 65.147 0.41605 68.503 68.376 68.792 3.3557 45 26 2 0 0 0 0.28552 1 15490 15490 14.838 4.7643 1 72526 + 26020 27771 16233 16242 30376 30376 0.04199763071733287 LTLEKDFIY 9 Unmodified _LTLEKDFIY_ 0 0 0 REV__L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|2|1|sense REV__L1ME1_dup4215|chr2:143630822-143631847:-|1.6656123076376417|0.0259703373720158|6.0|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 571.3099975585938 2 571.310615 1140.60668 0.37323 0.00021323 -0.065161 -3.7227E-05 0.30807 0.000176 571.3104266190044 65.383 0.2646 68.639 68.566 68.83 3.2556 28 18 2 0 0 0 0.28552 1 15662 15662 14.838 3.3436 1 140360 + 26021 27771 16233 16242 30377 30377 0.04199763071733287 LTLETAITI 9 Unmodified _LTLETAITI_ 0 0 0 L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|42|3|anti-sense L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|42|3|anti-sense L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|42|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.7922668457031 2 487.792058 973.569563 0.26886 0.00013115 -1.6152 -0.00078791 -1.3464 -0.00065676 487.7910751512322 75.072 0.50481 78.385 77.984 78.489 3.3127 99 57 2 0 0 0 0.48846 1 18424 18424 1.8442 0 1 230380 26022 12583 16234 16243 30378 30378 0.08172091525932501 LTLFTQQIF 9 Unmodified _LTLFTQQIF_ 0 0 0 REV__ENSG00000188283|ENST00000684119|ZNF383 REV__ENSG00000188283|ENST00000684119|ZNF383 MSMS UPN48_class_I_Rep_1 5 555.8130493164062 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 64.974 1 68.428 67.928 68.928 3.4541 0 0 0 0.3377 1 14748 14748 8.7454 0.83525 1 + 26023 20960 16235 16244 30379 30379 0.061674866541807205 LTLFTQQIF 9 Unmodified _LTLFTQQIF_ 0 0 0 REV__ENSG00000188283|ENST00000684119|ZNF383 REV__ENSG00000188283|ENST00000684119|ZNF383 MSMS UPN48_class_I_Rep_2 6 555.8140258789062 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 64.846 1 68.326 67.826 68.826 3.4792 0 0 0 0.18866 1 14694 14694 17.113 0.1706 1 + 26024 20960 16235 16244 30380 30380 0.061674866541807205 LTLFTQQIF 9 Unmodified _LTLFTQQIF_ 0 0 0 REV__ENSG00000188283|ENST00000684119|ZNF383 REV__ENSG00000188283|ENST00000684119|ZNF383 MULTI-MSMS UPN48_class_I_Rep_3 7 555.8140258789062 2 555.813325 1109.6121 0.42974 0.00023885 -1.6391 -0.00091106 -1.2094 -0.00067221 555.8133294117415 64.782 0.51475 68.29 67.966 68.481 3.5083 56 43 2 0 0 0 0.24936 1 14577 14577 17.113 3.2068 1 141480 + 26025 20960 16235 16244 30381 30381 0.061674866541807205 LTLGEQRFI 9 Unmodified _LTLGEQRFI_ 0 0 0 REV__AluJo_dup70782|chr19:14403342-14403651:-|4.480665487504866|0.2098720666644535|4.42|151.0|11|1|anti-sense REV__AluJo_dup70782|chr19:14403342-14403651:-|4.480665487504866|0.2098720666644535|4.42|151.0|11|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 538.8082275390625 2 538.808574 1075.60259 0.50359 0.00027134 -0.7217 -0.00038886 -0.21811 -0.00011752 538.8081478410362 59.261 0.20542 62.741 62.635 62.841 3.4801 14 11 2 0 0 0 0.37599 1 13015 13015 9.3831 0.63772 1 111960 + 26026 17019 16236 16245 30382 30382 0.06781718368665679 LTLGRNRR 8 Unmodified _LTLGRNRR_ 0 0 0 REV__LTR13__dup32|chr19:11988415-11989352:-|1.649458032722841|0.1058075465105751|3.96|151.0|50|2|anti-sense REV__LTR13__dup32|chr19:11988415-11989352:-|1.649458032722841|0.1058075465105751|3.96|151.0|50|2|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2875671386719 2 493.304324 984.594095 NaN NaN NaN NaN NaN NaN NaN 68.773 1 72.043 71.543 72.543 3.2696 0 0 0 0.39819 1 16663 16663 8.5933 0 1 + 26027 30826 16237 16246 30383 30383 0.10118209242693865 LTLHLHQC 8 Unmodified _LTLHLHQC_ 0 0 0 REV__MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|10|2|sense REV__MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 482.7955627441406 2 482.755287 963.496021 NaN NaN NaN NaN NaN NaN NaN 115.46 1 118.94 118.44 119.44 3.4802 0 0 0 0.40604 1 28392 28392 2.5775 0 1 + 26028 31762 16238 16247 30384 30384 0.01281264602482679 LTLKDLPTL 9 Unmodified _LTLKDLPTL_ 0 0 0 AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.3158874511719 2 507.3157 1012.61685 0.28791 0.00014606 -0.27932 -0.0001417 0.0085932 4.3594E-06 507.31553564833945 67.222 0.71185 70.673 70.325 71.036 3.4516 79 47 3 0 0 0 0.21414 2 15397 15397;15442 19.362 0 1 197570 26029 342 16239 16248 30385;30386 30385 0.11104370796954299 LTLKDLPTL 9 Unmodified _LTLKDLPTL_ 0 0 0 AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 507.3157958984375 2 507.3157 1012.61685 0.32682 0.0001658 -0.32555 -0.00016516 0.0012638 6.4113E-07 507.315457891785 67.019 0.66107 70.515 70.251 70.913 3.4964 65 42 2 0 0 0 0.21414 3 15356 15356;15395;15437 19.362 0 1 201390 26030 342 16239 16248 30387;30388;30389 30387 0.11104370796954299 LTLKDLPTL 9 Unmodified _LTLKDLPTL_ 0 0 0 AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|17|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 507.3160095214844 2 507.3157 1012.61685 0.32171 0.00016321 -0.19896 -0.00010093 0.12276 6.2277E-05 507.3155304102082 66.844 0.68905 70.352 70.089 70.778 3.5077 75 44 2 0 0 0 0.21414 1 15276 15276 19.362 0 1 188500 26031 342 16239 16248 30390 30390 0.11104370796954299 LTLKLNTLI 9 Unmodified _LTLKLNTLI_ 0 0 0 HAL1b_dup2261|chr7:50395127-50396928:-|4.625615538335815|0.330230574064924|3.81|151.0|92|2|anti-sense HAL1b_dup2261|chr7:50395127-50396928:-|4.625615538335815|0.330230574064924|3.81|151.0|92|2|anti-sense HAL1b_dup2261|chr7:50395127-50396928:-|4.625615538335815|0.330230574064924|3.81|151.0|92|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.8392333984375 2 514.839342 1027.66413 0.025441 1.3098E-05 -0.091326 -4.7018E-05 -0.065885 -3.392E-05 514.8391749872914 46.796 0.86202 50.491 50.104 50.966 3.6951 85 55 2 0 0 0 0.32682 1 9916 9916 12.241 1.4411 1 149940 26032 7923 16240 16249 30391 30391 0.15140650067974093 LTLMLLLK 8 Unmodified _LTLMLLLK_ 0 0 0 REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|94|2|anti-sense REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|94|2|anti-sense MSMS UPN47_class_I_Rep_1 2 472.81451416015625 2 472.814282 943.614011 NaN NaN NaN NaN NaN NaN NaN 66.221 1 69.579 69.079 70.079 3.3576 0 0 0 0.40404 1 15849 15849 5.2307 0 1 + 26033 32405 16241 16250 30392 30392 0.13994824138455897 LTLPHPLHV 9 Unmodified _LTLPHPLHV_ 0 0 0 ENST00000367184.2_1_1:204435983-204436325:-|nuORF ENST00000367184.2_1_1:204435983-204436325:-|nuORF ENST00000367184.2_1_1:204435983-204436325:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 514.2977905273438 2 513.808377 1025.6022 0.24135 0.00012401 -0.30142 -0.00015487 -0.060072 -3.0866E-05 514.3091804340962 45.075 0.094082 48.712 48.652 48.746 3.6372 8 5 2 0 0 0 0.12235 1 8592 8592 4.756 0 1 51966 26034 6347 16242 16251 30393 30393 0.0904234343945518 LTLPQALPQY 10 Unmodified _LTLPQALPQY_ 0 0 0 ENST00000437800.6_1_12:6925109-6928492:+|nuORF;ENSG00000010610|ENST00000011653|CD4 ENST00000437800.6_1_12:6925109-6928492:+|nuORF ENST00000437800.6_1_12:6925109-6928492:+|nuORF MSMS UPN48_class_I_Rep_2 6 572.3388061523438 2 572.324057 1142.63356 NaN NaN NaN NaN NaN NaN NaN 42.354 1 46.112 45.612 46.612 3.7579 0 0 0 0.53105 1 7832 7832 7.2892 1.5288 1 26035 760 16243 16252 30394 30394 0.06794871682905068 LTLQFRYW 8 Unmodified _LTLQFRYW_ 0 0 0 L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|98|2|sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|98|2|sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|98|2|sense MSMS UPN48_class_I_Rep_3 7 563.8038940429688 2 563.805834 1125.59712 NaN NaN NaN NaN NaN NaN NaN 35.305 1 38.977 38.477 39.477 3.6721 0 0 0 0.39996 1 5709 5709 7.9102 0 1 26036 14877 16244 16253 30395 30395 0.03934039576847681 LTLRALGTE 9 Unmodified _LTLRALGTE_ 0 0 0 REV__ENST00000566170.1_1_6:13615160-13615370:-|nuORF REV__ENST00000566170.1_1_6:13615160-13615370:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 486.802490234375 2 487.287474 972.560395 0.22615 0.0001102 1.1466 0.0005587 1.3727 0.0006689 487.2873965137269 88.416 0.052307 92.073 92.042 92.095 3.6563 8 5 2 0 0 0 0.12321 1 22111 22111 3.9444 0 1 46087 + 26037 23064 16245 16254 30396 30396 0.07301742960282809 LTLSISRTKT 10 Unmodified _LTLSISRTKT_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MSMS UPN48_class_I_Rep_1 5 560.3405151367188 2 560.340238 1118.66592 0.45254 0.00025357 0.028878 1.6181E-05 0.48141 0.00026976 560.3402239610471 93.649 1.7734 97.27 96.751 98.524 3.6208 643 215 6 0 0 0 0.54822 1 22525 22525 5.7319 0 1 8863400 26038 16639 16246 16255 30397 30397 0.11133659085908221 LTLSISRTKT 10 Unmodified _LTLSISRTKT_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MSMS UPN48_class_I_Rep_3 7 560.3403930664062 2 560.340238 1118.66592 0.42548 0.00023841 0.02731 1.5303E-05 0.45279 0.00025372 560.3402095003025 93.366 0.43637 97.257 96.876 97.312 3.8914 220 57 6 0 0 0 0.54822 1 22100 22100 5.7319 0 1 7609100 26039 16639 16246 16255 30398 30398 0.11133659085908221 LTLSISRTKT 10 Unmodified _LTLSISRTKT_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 560.340238 1118.66592 0.45254 0.00025357 0.028878 1.6181E-05 0.48141 0.00026976 560.3402239610471 93.649 1.7734 97.27 96.751 98.524 3.6208 -0.0018665 1.8857E-05 NaN 5.7319 643 215 6 NaN NaN NaN NaN 0 NaN NaN 0 8863400 26040 16639 16246 16255 0.11133659085908221 LTLSISRTKT 10 Unmodified _LTLSISRTKT_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 560.340238 1118.66592 0.49457 0.00027713 -0.0101 -5.6596E-06 0.48447 0.00027147 560.3401965064382 93.518 1.6658 97.288 96.804 98.47 3.77 0.016306 -2.4825E-05 NaN 5.7319 572 231 5 NaN NaN NaN NaN 0 NaN NaN 0 7453400 26041 16639 16246 16255 0.11133659085908221 LTLSISRTKT 10 Unmodified _LTLSISRTKT_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 560.340238 1118.66592 0.42548 0.00023841 0.02731 1.5303E-05 0.45279 0.00025372 560.3402095003025 93.366 0.43637 97.257 96.876 97.312 3.8914 -0.01444 1.71E-05 NaN 5.7319 220 57 6 NaN NaN NaN NaN 0 NaN NaN 0 7609100 26042 16639 16246 16255 0.11133659085908221 LTLSKTAKTQS 11 Unmodified _LTLSKTAKTQS_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.3431396484375 2 589.342978 1176.6714 0.45373 0.0002674 0.14705 8.6664E-05 0.60078 0.00035406 589.3429727748734 85.119 1.9609 88.71 88.504 90.465 3.5914 417 257 3 0 0 0 0.62748 2 21313 21313;21597 4.5289 4.5289 1 687910 + 26043 23732 16247 16256 30399;30400 30399 0.09013337877695449 LTLSKTAKTQS 11 Unmodified _LTLSKTAKTQS_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.3430786132812 2 589.342978 1176.6714 0.48126 0.00028363 0.081166 4.7835E-05 0.56243 0.00033146 589.3429478701224 83.59 1.1117 86.94 86.372 87.484 3.35 241 131 2 0 0 0 0.66059 2 20924 20924;20992 2.2828 2.2828 1 146560 + 26044 23732 16247 16256 30401;30402 30401 0.09013337877695449 LTLSKTAKTQS 11 Unmodified _LTLSKTAKTQS_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 589.3433227539062 2 589.342978 1176.6714 0.47978 0.00028276 0.037279 2.197E-05 0.51706 0.00030473 589.3428447456781 83.16 1.3926 86.841 86.355 87.748 3.6814 242 163 2 0 0 0 0.66059 1 19757 19757 2.2828 2.2828 1 302590 + 26045 23732 16247 16256 30403 30403 0.09013337877695449 LTLSKTAKTQS 11 Unmodified _LTLSKTAKTQS_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 589.34326171875 2 589.342978 1176.6714 0.48075 0.00028333 0.16599 9.7823E-05 0.64674 0.00038115 589.3429604514001 85.015 1.819 88.708 88.505 90.324 3.6937 396 235 2 0 0 0 0.62748 2 20276 20276;20580 4.5289 4.5289 1 1023500 + 26046 23732 16247 16256 30404;30405 30404 0.09013337877695449 LTLSKTAKTQS 11 Unmodified _LTLSKTAKTQS_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.3433837890625 2 589.342978 1176.6714 0.53822 0.0003172 -0.1316 -7.7556E-05 0.40663 0.00023964 589.3427995486146 83.09 1.2868 86.796 86.401 87.688 3.7066 227 164 2 0 0 0 0.66059 2 19670 19640;19670 2.2828 1.0715 1 267530 + 26047 23732 16247 16256 30406;30407 30407 0.09013337877695449 LTLSKTAKTQS 11 Unmodified _LTLSKTAKTQS_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.3431396484375 2 589.342978 1176.6714 0.53363 0.00031449 0.15883 9.3604E-05 0.69246 0.0004081 589.3429622980241 85.118 1.7719 88.867 88.425 90.197 3.7494 459 233 3 0 0 0 0.66059 1 20227 20227 2.2828 2.2828 1 836890 + 26048 23732 16247 16256 30408 30408 0.09013337877695449 LTLSQRLLLL 10 Unmodified _LTLSQRLLLL_ 0 0 0 REV__AluSx_dup71924|chr11:75341138-75341437:-|1.2430506476635714|0.0102794934669755|6.92|151.0|16|2|anti-sense REV__AluSx_dup71924|chr11:75341138-75341437:-|1.2430506476635714|0.0102794934669755|6.92|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 585.2310791015625 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.17 1 116.74 116.24 117.24 3.572 0 0 0 0.53105 1 27917 27917 1.3295 0 1 + 26049 17153 16248 16257 30409 30409 0.17671699396396434 LTLSRRWVF 9 Unmodified _LTLSRRWVF_ 0 0 0 REV__AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense REV__AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense MSMS UPN46_class_I_Rep_3 1 589.34326171875 2 589.345658 1176.67676 NaN NaN NaN NaN NaN NaN NaN 92.251 1 92.251 91.751 92.751 0 0 0 0 0.38784 1 22318 22318 3.5965 0.31518 1 + 26050 17130 16249 16258 30410 30410 0.09549106250847217 LTLSRRWVF 9 Unmodified _LTLSRRWVF_ 0 0 0 REV__AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense REV__AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.34228515625 2 589.345658 1176.67676 NaN NaN NaN NaN NaN NaN NaN 84.85 1 88.273 87.773 88.773 3.4232 0 0 0 0.37476 1 21142 21142 6.7232 0.99131 1 + 26051 17130 16249 16258 30411 30411 0.09549106250847217 LTLSRRWVF 9 Unmodified _LTLSRRWVF_ 0 0 0 REV__AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense REV__AluSx_dup105205|chr19:11938072-11938248:-|1.368181538416634|0.0278494902355895|5.62|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_3 4 589.342529296875 2 589.345658 1176.67676 NaN NaN NaN NaN NaN NaN NaN 87.03 1 90.41 89.91 90.91 3.3801 0 0 0 0.39518 1 21810 21810 1.8442 0.36234 1 + 26052 17130 16249 16258 30412 30412 0.09549106250847217 LTLSTILF 8 Unmodified _LTLSTILF_ 0 0 0 REV__L1M4b_dup3632|chr15:51943723-51944471:+|1.7576599569928573|0.1419047241787802|3.63|151.0|41|2|anti-sense REV__L1M4b_dup3632|chr15:51943723-51944471:+|1.7576599569928573|0.1419047241787802|3.63|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 454.2796325683594 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 40.159 1 43.9 43.4 44.4 3.7413 0 0 0 0.40746 1 7203 7203 0.69038 0 1 + 26053 24547 16250 16259 30413 30413 0.08561027705445667 LTLTQWWF 8 Unmodified _LTLTQWWF_ 0 0 0 REV__MERX_dup193|chr7:130520449-130521122:+|1.849799944136041|0.0678337748665423|4.77|150.0|32|1|anti-sense REV__MERX_dup193|chr7:130520449-130521122:+|1.849799944136041|0.0678337748665423|4.77|150.0|32|1|anti-sense MSMS UPN47_class_I_Rep_3 4 547.7859497070312 2 547.78711 1093.55967 NaN NaN NaN NaN NaN NaN NaN 51.709 1 54.915 54.415 55.415 3.2055 0 0 0 0.4044 1 11530 11530 4.756 0.42677 1 + 26054 31580 16251 16260 30414 30414 0.016629483112183152 LTLTRNCEKAY 11 Unmodified _LTLTRNCEKAY_ 0 0 0 REV__L1MB3_dup3718|chr3:183750259-183751391:-|1.1062031701259936|0.0340232349945332|5.02|151.0|27|3|sense REV__L1MB3_dup3718|chr3:183750259-183751391:-|1.1062031701259936|0.0340232349945332|5.02|151.0|27|3|sense MSMS UPN48_class_I_Rep_3 7 437.7786560058594 3 437.8957 1310.66527 NaN NaN NaN NaN NaN NaN NaN 59.357 1 62.88 62.38 63.38 3.5231 0 0 0 0.38417 1 12949 12949 2.2527 0.51045 1 + 26055 25881 16252 16261 30415 30415 0.022364963745530986 LTMVGFAA 8 Unmodified _LTMVGFAA_ 0 0 0 REV__ENST00000472467.1_1_1:155979333-155981702:-|nuORF REV__ENST00000472467.1_1_1:155979333-155981702:-|nuORF MSMS UPN47_class_I_Rep_2 3 405.21331787109375 2 405.214932 808.415311 NaN NaN NaN NaN NaN NaN NaN 40.111 1 43.482 42.982 43.982 3.3712 0 0 0 0.40604 1 7950 7950 2.5775 1.7838 1 + 26056 19978 16253 16262 30416 30416 0.0034398355959410765 LTNFRCVIQ 9 Unmodified _LTNFRCVIQ_ 0 0 0 L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.7973022460938 2 547.294776 1092.575 0.38826 0.00021249 -1.4617 -0.00079999 -1.0735 -0.0005875 547.7957878228723 55.467 0.69669 58.946 58.664 59.361 3.4785 69 40 3 0 0 0 0.30034 3 12588 12583;12588;12602 13.906 0 1 118880 26057 10353 16254 16263 30417;30418;30419 30418 0.032414918367749124 LTNFRCVIQ 9 Unmodified _LTNFRCVIQ_ 0 0 0 L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 547.294776 1092.575 0.30862 0.00016891 3.7608 0.0020583 4.0694 0.0022272 547.2962511888217 58.687 0.023979 58.687 58.672 58.696 0 -0.21289 0.0058824 NaN 13.906 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 139920 26058 10353 16254 16263 0.032414918367749124 LTNLLRRPQTA 11 Unmodified _LTNLLRRPQTA_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS UPN47_class_I_Rep_2 3 642.3843383789062 2 641.883136 1281.75172 0.58825 0.00037759 -1.0909 -0.00070022 -0.50264 -0.00032263 641.8823568072863 89.271 0.47369 92.723 92.52 92.994 3.4525 94 62 2 0 0 0 0.61292 1 22232 22232 4.897 4.897 1 161560 + 26059 19931 16255 16264 30420 30420 0.12211243991418996 LTNLLRRPQTA 11 Unmodified _LTNLLRRPQTA_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 641.883136 1281.75172 0.74996 0.00048139 -1.4538 -0.00093317 -0.70383 -0.00045178 641.8821906256397 92.691 0.097084 92.691 92.631 92.729 0 0.0014883 -0.00030213 NaN 4.897 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 510990 + 26060 19931 16255 16264 0.12211243991418996 LTNLLRRPQTA 11 Unmodified _LTNLLRRPQTA_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 641.883136 1281.75172 0.65331 0.00041935 -1.1801 -0.00075746 -0.52675 -0.00033811 641.8823073283809 88.8 0.42247 92.629 92.457 92.879 3.8293 -0.059692 4.9278E-05 NaN 4.897 112 57 2 NaN NaN NaN NaN 0 NaN NaN 0 233340 + 26061 19931 16255 16264 0.12211243991418996 LTNNRIVA 8 Unmodified _LTNNRIVA_ 0 0 0 REV__nc|ENSG00000017260|P98194-8|ATP2C1 REV__nc|ENSG00000017260|P98194-8|ATP2C1 MULTI-MSMS UPN47_class_I_Rep_1 2 450.7662658691406 2 450.766709 899.518865 -0.39175 -0.00017659 -0.085425 -3.8507E-05 -0.47717 -0.00021509 450.7665539244433 27.967 0.73499 31.733 31.418 32.153 3.7662 125 59 3 0 0 0 0.82752 1 4259 4259 10.824 0 1 239980 + 26062 31932 16256 16265 30421 30421 0.06508606991610577 LTNPNCTRPAA 11 Unmodified _LTNPNCTRPAA_ 0 0 0 REV__AluJo_dup7583|chr2:28756526-28756787:-|1.8031054786587208|0.0561654220875209|5.0|151.0|8|3|sense REV__AluJo_dup7583|chr2:28756526-28756787:-|1.8031054786587208|0.0561654220875209|5.0|151.0|8|3|sense MSMS UPN48_class_I_Rep_3 7 579.2926635742188 2 579.290222 1156.56589 NaN NaN NaN NaN NaN NaN NaN 38.462 1 42.121 41.621 42.621 3.6595 0 0 0 0.38417 1 6612 6612 0.96228 0.16864 1 + 26063 17022 16257 16266 30422 30422 -0.006129015195483589 LTNRKEKH 8 Unmodified _LTNRKEKH_ 0 0 0 L1P2_dup331|chr3:138573974-138576921:+|1.0870494656700471|0.0282398314082608|5.27|151.0|29|2|sense;L1P2_dup1033|chrX:110238415-110241534:+|1.9989285354908304|0.0624600329596591|5.0|151.0|33|2|sense L1P2_dup331|chr3:138573974-138576921:+|1.0870494656700471|0.0282398314082608|5.27|151.0|29|2|sense L1P2_dup331|chr3:138573974-138576921:+|1.0870494656700471|0.0282398314082608|5.27|151.0|29|2|sense MSMS UPN47_class_I_Rep_1 2 513.2978515625 2 513.296165 1024.57778 NaN NaN NaN NaN NaN NaN NaN 52.523 1 56.081 55.581 56.581 3.5585 0 0 0 0.3903 1 11693 11693 11.64 1.5664 1 26064 13477 16258 16267 30423 30423 0.06647083285952249 LTNTWFYQS 9 Unmodified _LTNTWFYQS_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.2744750976562 2 580.274564 1158.53457 0.41882 0.00024303 0.17481 0.00010144 0.59363 0.00034447 580.2745081260344 51.574 0.50885 55.096 54.809 55.317 3.5227 70 43 3 0 0 0 0.31407 1 10635 10635 13.042 13.042 1 276390 26065 12592 16259 16268 30424 30424 -0.03835151282009974 LTNTWFYQS 9 Unmodified _LTNTWFYQS_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.2733154296875 2 580.274564 1158.53457 0.48471 0.00028126 -0.10952 -6.3549E-05 0.37519 0.00021772 580.2743359564248 51.504 0.44954 55.171 54.901 55.35 3.6679 52 38 2 0 0 0 0.31407 2 10637 10612;10637 13.042 13.042 1 229400 26066 12592 16259 16268 30425;30426 30426 -0.03835151282009974 LTNTWFYQS 9 Unmodified _LTNTWFYQS_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.2752075195312 2 580.274564 1158.53457 0.36415 0.00021131 0.25222 0.00014636 0.61636 0.00035766 580.2746811997366 51.55 0.43306 55.161 54.903 55.336 3.6105 66 36 2 0 0 0 0.31407 1 10562 10562 13.042 13.042 1 235430 26067 12592 16259 16268 30427 30427 -0.03835151282009974 LTNTWFYQS 9 Unmodified _LTNTWFYQS_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 580.274564 1158.53457 0.41882 0.00024303 0.17481 0.00010144 0.59363 0.00034447 580.2745081260344 51.574 0.50885 55.096 54.809 55.317 3.5227 -0.046578 5.0991E-05 NaN 13.042 70 43 3 NaN NaN NaN NaN 0 NaN NaN 0 276390 26068 12592 16259 16268 -0.03835151282009974 LTNTWFYQS 9 Unmodified _LTNTWFYQS_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 580.274564 1158.53457 0.48471 0.00028126 -0.10952 -6.3549E-05 0.37519 0.00021772 580.2743359564248 51.504 0.44954 55.171 54.901 55.35 3.6679 0.028585 -0.00027899 NaN 13.042 52 38 2 NaN NaN NaN NaN 0 NaN NaN 0 229400 26069 12592 16259 16268 -0.03835151282009974 LTNTWFYQS 9 Unmodified _LTNTWFYQS_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|21|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 580.274564 1158.53457 0.36415 0.00021131 0.25222 0.00014636 0.61636 0.00035766 580.2746811997366 51.55 0.43306 55.161 54.903 55.336 3.6105 0.017994 0.00014082 NaN 13.042 66 36 2 NaN NaN NaN NaN 0 NaN NaN 0 235430 26070 12592 16259 16268 -0.03835151282009974 LTPCRVIRV 9 Unmodified _LTPCRVIRV_ 0 0 0 ENST00000581693.5_1_17:62500392-62502245:-|nuORF;ENST00000577922.5_1_17:62500880-62502245:-|nuORF ENST00000581693.5_1_17:62500392-62502245:-|nuORF ENST00000581693.5_1_17:62500392-62502245:-|nuORF MSMS UPN46_class_I_Rep_3 1 528.8213500976562 2 528.820961 1055.62737 NaN NaN NaN NaN NaN NaN NaN 79.789 1 79.789 79.289 80.289 0 0 0 0 0.39598 1 18762 18762 1.6526 0 1 26071 7538 16260 16269 30428 30428 0.10178074970394846 LTPFVKLKLL 10 Unmodified _LTPFVKLKLL_ 0 0 0 REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK MSMS UPN46_class_I_Rep_3 1 586.3923950195312 2 586.394285 1170.77402 NaN NaN NaN NaN NaN NaN NaN 43.886 1 43.886 43.386 44.386 0 0 0 0 0.53105 1 8799 8799 1.4819 0.8804 1 + 26072 18785 16261 16270 30429 30429 0.19546075407129138 LTPHTEEKY 9 Unmodified _LTPHTEEKY_ 0 0 0 nc|ENSG00000068305|Q02078|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A nc|ENSG00000068305|Q02078|MEF2A nc|ENSG00000068305|Q02078|MEF2A MULTI-MSMS UPN48_class_I_Rep_2 6 559.7813720703125 2 559.279846 1116.54514 0.43098 0.00024104 -0.13286 -7.4307E-05 0.29811 0.00016673 559.2796737131066 42.129 0.66159 45.887 45.529 46.191 3.7579 99 65 2 0 0 0 0.41259 1 7756 7756 7.2892 1.5574 1 122430 26073 16632 16262 16271 30430 30430 -0.00847168627569772 LTPIRPKNKV 10 Unmodified _LTPIRPKNKV_ 0 0 0 REV__ENST00000296679.8_1_5:76785339-76785375:-|nuORF REV__ENST00000296679.8_1_5:76785339-76785375:-|nuORF MSMS UPN48_class_I_Rep_3 7 583.3770751953125 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 43.596 1 47.234 46.734 47.734 3.6385 0 0 0 0.53105 1 8132 8132 1.4819 0.28856 1 + 26074 21657 16263 16272 30431 30431 0.1584994845638903 LTPKQHPGEE 10 Unmodified _LTPKQHPGEE_ 0 0 0 REV__MLT1B_dup9417|chr9:4734005-4734371:+|1.5832605033501792|0.3784440775582045|2.06|151.0|8|2|sense REV__MLT1B_dup9417|chr9:4734005-4734371:+|1.5832605033501792|0.3784440775582045|2.06|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 568.2904052734375 2 568.290745 1134.56694 NaN NaN NaN NaN NaN NaN NaN 26.268 1 30.03 29.53 30.53 3.7624 0 0 0 0.53105 1 3734 3734 1.6526 0 1 + 26075 31621 16264 16273 30432 30432 0.005036361209931783 LTPPNSTPGF 10 Unmodified _LTPPNSTPGF_ 0 0 0 ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MULTI-MSMS UPN48_class_I_Rep_2 6 515.7636108398438 2 515.763832 1029.51311 0.27523 0.00014195 -0.43553 -0.00022463 -0.1603 -8.2678E-05 515.7636334261459 42.634 0.42653 46.392 46.239 46.665 3.7579 67 39 2 0 0 0 0.56118 1 7878 7878 2.9952 0 1 132890 26076 3203 16265 16274 30433 30433 -0.00046536310719602625 LTPPNSTPGF 10 Unmodified _LTPPNSTPGF_ 0 0 0 ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD ENSG00000141052|ENST00000425538|MYOCD ENSG00000141052|ENST00000425538|MYOCD MULTI-MSMS UPN48_class_I_Rep_3 7 515.7632446289062 2 515.763832 1029.51311 0.2576 0.00013286 -0.34411 -0.00017748 -0.086516 -4.4622E-05 515.763738551828 42.869 0.52862 46.51 46.234 46.762 3.6415 56 41 2 0 0 0 0.56118 1 7839 7839 2.9952 0 1 162690 26077 3203 16265 16274 30434 30434 -0.00046536310719602625 LTPQPSQGLN 10 Unmodified _LTPQPSQGLN_ 0 0 0 REV__HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|116|3|anti-sense REV__HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|116|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.780029296875 2 527.780013 1053.54547 0.40841 0.00021555 -2.0188 -0.0010655 -1.6104 -0.00084994 527.7798372106781 31.858 0.34694 35.499 35.339 35.686 3.641 58 33 2 0 0 0 0.53414 1 4825 4825 7.609 0.88579 1 78639 + 26078 23887 16266 16275 30435 30435 0.020842510923102964 LTPVRMVILK 10 Unmodified _LTPVRMVILK_ 0 0 0 L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|18|1|sense L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|18|1|sense L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|18|1|sense MSMS UPN48_class_I_Rep_3 7 585.3746337890625 2 585.375569 1168.73659 NaN NaN NaN NaN NaN NaN NaN 48.787 1 52.416 51.916 52.916 3.6291 0 0 0 0.53105 1 9725 9725 1.3295 0 1 26079 13605 16267 16276 30436 30436 0.1589666086986199 LTPYHLSFF 9 Unmodified _LTPYHLSFF_ 0 0 0 REV__HERVH-int_dup2856|chr7:77340857-77342939:+|1.3142155121996075|0.1951291242807601|2.75|151.0|5|1|sense REV__HERVH-int_dup2856|chr7:77340857-77342939:+|1.3142155121996075|0.1951291242807601|2.75|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 563.3189697265625 2 562.792392 1123.57023 0.51798 0.00029151 -4.0074 -0.0022553 -3.4894 -0.0019638 562.7904808399312 55.749 0.074604 59.059 58.998 59.072 3.3102 6 4 2 0 0 0 0.10341 1 12708 12708 16.942 2.3606 1 45987 + 26080 23664 16268 16277 30437 30437 0.013389309656758996 LTQANLILY 9 Unmodified _LTQANLILY_ 0 0 0 REV__L1MA1_dup1275|chr5:76899235-76902745:-|16.1292807536495|0.021447217441539|9.55|150.0|19|1|sense REV__L1MA1_dup1275|chr5:76899235-76902745:-|16.1292807536495|0.021447217441539|9.55|150.0|19|1|sense MSMS UPN48_class_I_Rep_3 7 524.805908203125 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 64.994 1 68.502 68.002 69.002 3.5077 0 0 0 0.29868 1 14653 14653 10.824 0 1 + 26081 24752 16269 16278 30438 30438 0.07455200137133033 LTQFFRGK 8 Unmodified _LTQFFRGK_ 0 0 0 nc|ENSG00000172148|Q8NGA2|OR7A2P nc|ENSG00000172148|Q8NGA2|OR7A2P nc|ENSG00000172148|Q8NGA2|OR7A2P MSMS UPN47_class_I_Rep_1 2 498.7844543457031 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 67.388 1 70.749 70.249 71.249 3.3611 0 0 0 0.40404 1 16203 16203 5.2307 0 1 26082 16754 16270 16279 30439 30439 0.05729483888330833 LTQLQGTQQT 10 Unmodified _LTQLQGTQQT_ 0 0 0 REV__MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|3|1|sense REV__MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 559.2940673828125 2 559.296027 1116.5775 NaN NaN NaN NaN NaN NaN NaN 65.471 1 68.979 68.479 69.479 3.5077 0 0 0 0.53105 1 14798 14798 2.4985 0.21571 1 + 26083 31285 16271 16280 30440 30440 0.023876187754240163 LTQRDIKTL 9 Unmodified _LTQRDIKTL_ 0 0 0 REV__L1MC5a_dup914|chr1:204532473-204533085:-|2.1856487847513977|0.1549672014785629|3.82|151.0|2|1|sense REV__L1MC5a_dup914|chr1:204532473-204533085:-|2.1856487847513977|0.1549672014785629|3.82|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.3270874023438 2 544.327131 1086.63971 0.0075956 4.1345E-06 -0.16333 -8.8906E-05 -0.15574 -8.4772E-05 544.3270168584769 37.613 1.2351 41.278 40.897 42.132 3.6652 202 91 3 0 0 0 0.086321 1 7161 7161 37.075 5.0372 1 640680 + 26084 27177 16272 16281 30441 30441 0.09985389914436382 LTQRDIKTL 9 Unmodified _LTQRDIKTL_ 0 0 0 REV__L1MC5a_dup914|chr1:204532473-204533085:-|2.1856487847513977|0.1549672014785629|3.82|151.0|2|1|sense REV__L1MC5a_dup914|chr1:204532473-204533085:-|2.1856487847513977|0.1549672014785629|3.82|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.3270263671875 2 544.327131 1086.63971 -0.074383 -4.0489E-05 -0.21916 -0.00011929 -0.29354 -0.00015978 544.3270213355781 38.279 1.2339 41.52 41.032 42.266 3.2414 199 90 3 0 0 0 0.086321 1 7419 7419 37.075 5.0372 1 471840 + 26085 27177 16272 16281 30442 30442 0.09985389914436382 LTQRTTLFY 9 Unmodified _LTQRTTLFY_ 0 0 0 REV__ENST00000570005.5_1_16:2732549-2747193:+|nuORF REV__ENST00000570005.5_1_16:2732549-2747193:+|nuORF MSMS UPN47_class_I_Rep_3 4 571.812744140625 2 571.813856 1141.61316 NaN NaN NaN NaN NaN NaN NaN 65.14 1 68.32 67.82 68.82 3.1795 0 0 0 0.36505 1 15625 15625 7.2892 0.93513 1 + 26086 20248 16273 16282 30443 30443 0.04801701023075111 LTQRWVRIRPT 11 Unmodified _LTQRWVRIRPT_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-SECPEP UPN48_class_I_Rep_1 5 475.79949951171875 3 475.95276 1424.83645 0.24188 0.00011512 -4.4244 -0.0021058 -4.1825 -0.0019907 475.95002986103447 59.272 0.097118 62.752 62.706 62.804 3.4801 7 5 2 0 0 0 22.551 1 13023 13023 1.3296 0.11481 1 63241 + 26087 17863 16274 16283 30444 30444 0.1410261452801933 LTQSQRTI 8 Unmodified _LTQSQRTI_ 0 0 0 nc|ENSG00000274349|Q5TYW1-2|ZNF658;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF;ENSG00000274349|ENST00000621410|ZNF658;ENST00000377618.4_9:39444499-39464431:-|nuORF nc|ENSG00000274349|Q5TYW1-2|ZNF658 nc|ENSG00000274349|Q5TYW1-2|ZNF658 MULTI-MSMS UPN47_class_I_Rep_1 2 473.76898193359375 2 473.769448 945.524344 -0.393 -0.00018619 -0.4131 -0.00019572 -0.80611 -0.00038191 473.7690703570951 14.165 0.39984 17.64 17.525 17.925 3.475 103 49 3 0 0 0 0.82752 1 521 521 10.824 0 1 119190 26088 5820 16275 16284 30445 30445 0.049402857834252245 LTQVKKPVI 9 Unmodified _LTQVKKPVI_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MSMS UPN48_class_I_Rep_3 7 513.3389892578125 2 513.33951 1024.66447 NaN NaN NaN NaN NaN NaN NaN 72.404 1 75.93 75.43 76.43 3.5266 0 0 0 0.38916 1 16873 16873 3.2813 0.28607 1 26089 2576 16276 16285 30446 30446 0.15312069787796645 LTQVKKPVI 9 Unmodified _LTQVKKPVI_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MSMS UPN48_class_I_Rep_3 7 513.3397216796875 2 513.33951 1024.66447 NaN NaN NaN NaN NaN NaN NaN 72.734 1 76.271 75.771 76.771 3.5373 0 0 0 0.37692 1 16973 16973 6.2058 0.47393 1 26090 2576 16276 16285 30447 30447 0.15312069787796645 LTRETIKI 8 Unmodified _LTRETIKI_ 0 0 0 L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.80706787109375 2 487.305667 972.596781 0.17511 8.5333E-05 -0.40601 -0.00019785 -0.2309 -0.00011252 487.3052535375679 38.699 0.68318 42.204 41.819 42.502 3.5048 73 58 2 0 0 0 0.82752 1 6701 6701 16.149 0 1 116500 26091 15018 16277 16286 30448 30448 0.10938619856995047 LTRETIKI 8 Unmodified _LTRETIKI_ 0 0 0 L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 487.80706787109375 2 487.305667 972.596781 0.17511 8.5333E-05 -0.40601 -0.00019785 -0.2309 -0.00011252 487.3052535375679 38.699 0.68318 42.204 41.819 42.502 3.5048 73 58 2 0 0 0 0.72333 1 6701 6701 16.149 0 1 116500 26092 15018 16277 16286 30449 30449 0.10938619856995047 LTRETIKI 8 Unmodified _LTRETIKI_ 0 0 0 L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.305419921875 2 487.305667 972.596781 0.21432 0.00010444 -0.35787 -0.00017439 -0.14355 -6.9952E-05 487.3053310055819 38.256 0.64275 41.972 41.688 42.331 3.7164 99 61 2 0 0 0 0.82752 2 6594 6594;6634 11.495 0 1 147650 26093 15018 16277 16286 30450;30451 30450 0.10938619856995047 LTRETIKI 8 Unmodified _LTRETIKI_ 0 0 0 L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.30523681640625 2 487.305667 972.596781 0.14472 7.0525E-05 -0.40401 -0.00019688 -0.25929 -0.00012635 487.3053970538631 38.311 0.52174 41.971 41.771 42.293 3.6595 63 50 2 0 0 0 0.82752 2 6562 6562;6610 11.495 0 1 132240 26094 15018 16277 16286 30452;30453 30452 0.10938619856995047 LTRFALEI 8 Unmodified _LTRFALEI_ 0 0 0 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 MULTI-MSMS UPN48_class_I_Rep_3 7 481.7872009277344 2 481.78711 961.559667 0.13874 6.6842E-05 -0.058 -2.7944E-05 0.080739 3.8899E-05 481.7868924289438 41.314 0.64673 44.96 44.642 45.289 3.6458 88 64 2 0 0 0 0.82752 1 7447 7447 13.906 0 1 145630 + 26095 18119 16278 16287 30454 30454 0.07734948311224343 LTRFFFQLQ 9 Unmodified _LTRFFFQLQ_ 0 0 0 REV__ENSG00000115942.9,ORC2,chr2,-,I9.1,200937967,200941247|28|6.29|2|intron REV__ENSG00000115942.9,ORC2,chr2,-,I9.1,200937967,200941247|28|6.29|2|intron MSMS UPN48_class_I_Rep_2 6 600.3534545898438 2 600.332216 1198.64988 NaN NaN NaN NaN NaN NaN NaN 65.392 1 68.871 68.371 69.371 3.4792 0 0 0 0.38784 1 14861 14861 3.5965 0.31518 1 + 26096 18586 16279 16288 30455 30455 0.05849997639666071 LTRFFSTIY 9 Unmodified _LTRFFSTIY_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|192|1|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|192|1|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|192|1|anti-sense MSMS UPN48_class_I_Rep_2 6 574.3111572265625 2 574.310949 1146.60735 NaN NaN NaN NaN NaN NaN NaN 62.738 1 66.212 65.712 66.712 3.4738 0 0 0 0.38916 1 14047 14047 3.2813 1.4371 1 26097 9728 16280 16289 30456 30456 0.03990602511430552 LTRFWSSLL 9 Unmodified _LTRFWSSLL_ 0 0 0 L1PA13_dup4193|chr8:47466952-47469880:+|9.572322566035089|0.0872632415435912|6.78|151.0|150|2|anti-sense L1PA13_dup4193|chr8:47466952-47469880:+|9.572322566035089|0.0872632415435912|6.78|151.0|150|2|anti-sense L1PA13_dup4193|chr8:47466952-47469880:+|9.572322566035089|0.0872632415435912|6.78|151.0|150|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.3218994140625 2 561.818941 1121.62333 0.44056 0.00024752 -0.11957 -6.7178E-05 0.32099 0.00018034 561.8187392462014 49.277 1.2428 52.801 52.209 53.452 3.5243 218 88 3 0 0 0 0.47493 1 10081 10081 3.2813 0.28607 1 756070 26098 13754 16281 16290 30457 30457 0.06738308748322197 LTRKMKDLYK 10 Unmodified _LTRKMKDLYK_ 0 0 0 L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|45|2|sense L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|45|2|sense L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|45|2|sense MSMS UPN48_class_I_Rep_2 6 648.3790893554688 2 648.37884 1294.74313 NaN NaN NaN NaN NaN NaN NaN 73.556 1 77.134 76.634 77.634 3.5779 0 0 0 0.53105 1 17275 17275 3.5965 0.8613 1 26099 15263 16282 16291 30458 30458 0.10754554030563668 LTRLKMFLF 9 Unmodified _LTRLKMFLF_ 0 0 0 HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|61|3|anti-sense HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|61|3|anti-sense HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|61|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.8506469726562 2 584.849187 1167.68382 NaN NaN NaN NaN NaN NaN NaN 34.443 1 34.443 33.943 34.943 0 0 0 0 0.40038 1 6150 6150 0.6015 0 1 26100 7884 16283 16292 30459 30459 0.10668702807038244 LTRNRWLPAL 10 Unmodified _LTRNRWLPAL_ 0 0 0 nc|ENSG00000172009|P52888-2|THOP1 nc|ENSG00000172009|P52888-2|THOP1 nc|ENSG00000172009|P52888-2|THOP1 MULTI-MSMS UPN48_class_I_Rep_1 5 620.8707885742188 2 620.369664 1238.72478 0.42488 0.00026358 -0.91606 -0.00056829 -0.49118 -0.00030471 620.8704775941661 110.35 0.096046 113.98 113.95 114.05 3.6326 8 6 2 0 0 0 0.56478 1 26805 26805 0.45834 0 1 147180 26101 16753 16284 16293 30460 30460 0.1149618017091143 LTRQKRANP 9 Unmodified _LTRQKRANP_ 0 0 0 REV__L1PA7_dup4963|chr6:20592767-20597105:-|2.2343054575988672|0.1017072649623313|4.46|151.0|40|2|sense REV__L1PA7_dup4963|chr6:20592767-20597105:-|2.2343054575988672|0.1017072649623313|4.46|151.0|40|2|sense MSMS UPN48_class_I_Rep_3 7 542.322021484375 2 542.322714 1082.63087 NaN NaN NaN NaN NaN NaN NaN 26.405 1 30.172 29.672 30.672 3.7663 0 0 0 0.3967 1 3337 3337 1.4819 0 1 + 26102 30115 16285 16294 30461 30461 0.09286461068609242 LTRRGVRQ 8 Unmodified _LTRRGVRQ_ 0 0 0 REV__ENST00000380834.6_1_2:25042774-25043173:+|nuORF REV__ENST00000380834.6_1_2:25042774-25043173:+|nuORF MSMS UPN47_class_I_Rep_2 3 493.3063049316406 2 493.304324 984.594095 NaN NaN NaN NaN NaN NaN NaN 78.916 1 82.271 81.771 82.771 3.3554 0 0 0 0.40404 1 19620 19620 5.2307 0 1 + 26103 22057 16286 16295 30462 30462 0.10118209242705234 LTRRPLQSMPR 11 Unmodified _LTRRPLQSMPR_ 0 0 0 nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1 nc|ENSG00000173928|Q6NVH7|SWSAP1 nc|ENSG00000173928|Q6NVH7|SWSAP1 MULTI-MSMS UPN48_class_I_Rep_3 7 452.2619323730469 3 452.262717 1353.76632 0.11362 5.1385E-05 0.24996 0.00011305 0.36358 0.00016443 452.26281114719467 58.176 1.2025 61.708 61.315 62.517 3.5317 128 79 2 0 0 0 0.68132 1 12778 12778 0.40827 0.041592 1 244020 26104 4656 16287 16296 30463 30463 0.10358992867895722 LTRWRERP 8 Unmodified _LTRWRERP_ 0 0 0 REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|193|2|anti-sense REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|193|2|anti-sense MSMS UPN47_class_I_Rep_3 4 557.300537109375 2 557.317432 1112.62031 NaN NaN NaN NaN NaN NaN NaN 62.302 1 65.469 64.969 65.969 3.1667 0 0 0 0.4044 1 14761 14761 4.756 0 1 + 26105 28963 16288 16297 30464 30464 0.0685047841418509 LTRWRRET 8 Unmodified _LTRWRRET_ 0 0 0 LTR5B_dup322|chr17:18302964-18303938:+|1.7603970899462509|0.4543696548774717|1.95|151.0|42|2|anti-sense LTR5B_dup322|chr17:18302964-18303938:+|1.7603970899462509|0.4543696548774717|1.95|151.0|42|2|anti-sense LTR5B_dup322|chr17:18302964-18303938:+|1.7603970899462509|0.4543696548774717|1.95|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 559.3157958984375 2 559.314889 1116.61522 NaN NaN NaN NaN NaN NaN NaN 59.102 1 62.519 62.019 63.019 3.4171 0 0 0 0.40472 1 13698 13698 4.3292 0 1 26106 15688 16289 16298 30465 30465 0.06158174551569573 LTSDHDIL 8 Unmodified _LTSDHDIL_ 0 0 0 ENST00000483152.1_1_11:66029308-66029782:+|nuORF ENST00000483152.1_1_11:66029308-66029782:+|nuORF ENST00000483152.1_1_11:66029308-66029782:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 457.234619140625 2 457.234907 912.455261 -0.47881 -0.00021893 0.31505 0.00014405 -0.16376 -7.4878E-05 457.2349568755481 36.407 0.94969 39.818 39.492 40.442 3.4114 153 71 3 0 0 0 0.82752 1 6887 6887 24.674 1.5255 1 439550 26107 7008 16290 16299 30466 30466 -0.004467982361461509 LTSFAHTPL 9 Unmodified _LTSFAHTPL_ 0 0 0 REV__ENST00000567842.5_1_16:28138076-28157497:-|nuORF REV__ENST00000567842.5_1_16:28138076-28157497:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 493.76812744140625 2 493.768917 985.523281 0.20359 0.00010053 -0.24012 -0.00011856 -0.036526 -1.8035E-05 493.76874933134764 54.258 0.31456 57.773 57.61 57.925 3.5143 32 21 2 0 0 0 0.13631 1 11451 11451 26.884 0 1 139460 + 26108 20301 16291 16300 30467 30467 0.029940714145254788 LTSFAHTPL 9 Unmodified _LTSFAHTPL_ 0 0 0 REV__ENST00000567842.5_1_16:28138076-28157497:-|nuORF REV__ENST00000567842.5_1_16:28138076-28157497:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 493.768917 985.523281 0.093638 4.6235E-05 -0.23454 -0.00011581 -0.1409 -6.9572E-05 493.76878926086283 53.761 0.68014 57.288 57.066 57.746 3.5278 -0.27506 -7.7648E-05 NaN 26.884 65 38 2 NaN NaN NaN NaN 0 NaN NaN 0 96237 + 26109 20301 16291 16300 0.029940714145254788 LTSGPENTLF 10 Unmodified _LTSGPENTLF_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;ENST00000503952.5_1_4:128606686-128637588:+|nuORF nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN48_class_I_Rep_2 6 539.77685546875 2 539.774396 1077.53424 NaN NaN NaN NaN NaN NaN NaN 77.576 1 81.188 80.688 81.688 3.6116 0 0 0 0.53105 1 18368 18368 22.736 0.98964 1 26110 4073 16292 16301 30468 30468 -0.001425710018565951 LTSGPENTLF 10 Unmodified _LTSGPENTLF_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;ENST00000503952.5_1_4:128606686-128637588:+|nuORF nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN48_class_I_Rep_2 6 539.776123046875 2 539.774396 1077.53424 NaN NaN NaN NaN NaN NaN NaN 77.852 1 81.474 80.974 81.974 3.6222 0 0 0 0.53105 1 18451 18451 29.082 5.9332 1 26111 4073 16292 16301 30469 30469 -0.001425710018565951 LTSHPVGYI 9 Unmodified _LTSHPVGYI_ 0 0 0 REV__nc|ENSG00000178177|Q8N3X6-2|LCORL REV__nc|ENSG00000178177|Q8N3X6-2|LCORL MULTI-MSMS UPN48_class_I_Rep_2 6 493.7690124511719 2 493.768917 985.523281 0.36281 0.00017914 -0.2598 -0.00012828 0.10301 5.0863E-05 493.7687066325349 54.2 0.40728 57.782 57.489 57.896 3.5817 40 24 2 0 0 0 0.17468 1 11416 11416 23.148 1.4018 1 97580 + 26112 32068 16293 16302 30470 30470 0.029940714145254788 LTSHRVYD 8 Unmodified _LTSHRVYD_ 0 0 0 L1MD2_dup6352|chrX:74570302-74571219:+|1.4942149237606914|0.2146816182217782|2.8|151.0|21|2|sense L1MD2_dup6352|chrX:74570302-74571219:+|1.4942149237606914|0.2146816182217782|2.8|151.0|21|2|sense L1MD2_dup6352|chrX:74570302-74571219:+|1.4942149237606914|0.2146816182217782|2.8|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 495.7540283203125 2 495.753798 989.493044 NaN NaN NaN NaN NaN NaN NaN 78.817 1 82.438 81.938 82.938 3.6216 0 0 0 0.40659 1 18671 18671 1.8442 1.0506 1 26113 12016 16294 16303 30471 30471 -0.0021228725066748666 LTSIHLLAY 9 Unmodified _LTSIHLLAY_ 0 0 0 REV__MER119_dup1060|chr17:45277642-45278163:+|1.0773105613084286|0.2937766244989245|1.87|151.0|30|2|anti-sense REV__MER119_dup1060|chr17:45277642-45278163:+|1.0773105613084286|0.2937766244989245|1.87|151.0|30|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.79931640625 2 515.800217 1029.58588 NaN NaN NaN NaN NaN NaN NaN 47.834 1 51.57 51.07 52.07 3.7361 0 0 0 0.36505 1 9492 9492 7.2892 0.56607 1 + 26114 31080 16295 16304 30472 30472 0.07227217482704873 LTSITVELV 9 Unmodified _LTSITVELV_ 0 0 0 L1PA5_dup10302|chr17:2652757-2653430:+|2.2803025640277235|0.0499441293398331|5.51|151.0|29|1|anti-sense;L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|248|2|anti-sense L1PA5_dup10302|chr17:2652757-2653430:+|2.2803025640277235|0.0499441293398331|5.51|151.0|29|1|anti-sense L1PA5_dup10302|chr17:2652757-2653430:+|2.2803025640277235|0.0499441293398331|5.51|151.0|29|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7907409667969 2 487.792058 973.569563 0.24969 0.0001218 -2.667 -0.0013009 -2.4173 -0.0011791 487.7905362524982 75.817 0.049904 79.418 79.402 79.452 3.6012 9 5 2 0 0 0 0.46434 1 17893 17893 4.3292 0 1 87914 26115 14418 16296 16305 30473 30473 0.0817209152594387 LTSIVVSGVS 10 Unmodified _LTSIVVSGVS_ 0 0 0 REV__L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|224|1|anti-sense REV__L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|224|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.48602294921875 2 481.281857 960.549162 NaN NaN NaN NaN NaN NaN NaN 96.22 1 96.22 95.72 96.72 0 0 0 0 0.53105 1 23390 23390 1.4819 0 1 + 26116 28851 16297 16306 30474 30474 0.06730920866152701 LTSLNKKNQ 9 Unmodified _LTSLNKKNQ_ 0 0 0 REV__L1MC5_dup9440|chr10:68027220-68027581:-|1.0260765240894345|0.0633031472531049|4.02|151.0|21|2|anti-sense REV__L1MC5_dup9440|chr10:68027220-68027581:-|1.0260765240894345|0.0633031472531049|4.02|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.3026123046875 2 523.303655 1044.59276 0.34109 0.00017849 -0.69999 -0.00036631 -0.3589 -0.00018781 523.3030302459525 80.089 0.18966 83.554 83.409 83.599 3.465 35 27 2 0 0 0 0.47197 1 19962 19962 3.5965 0.31518 1 420530 + 26117 27099 16298 16307 30475 30475 0.07224530363282611 LTSLNKKNQ 9 Unmodified _LTSLNKKNQ_ 0 0 0 REV__L1MC5_dup9440|chr10:68027220-68027581:-|1.0260765240894345|0.0633031472531049|4.02|151.0|21|2|anti-sense REV__L1MC5_dup9440|chr10:68027220-68027581:-|1.0260765240894345|0.0633031472531049|4.02|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 523.3035888671875 2 523.303655 1044.59276 0.36077 0.00018879 -0.36018 -0.00018849 0.00058247 3.0481E-07 523.3033199135757 80.002 1.3903 83.311 82.157 83.547 3.309 245 141 3 0 0 0 0.47197 1 20035 20035 3.5965 3.5965 1 459950 + 26118 27099 16298 16307 30476 30476 0.07224530363282611 LTSLNKKNQ 9 Unmodified _LTSLNKKNQ_ 0 0 0 REV__L1MC5_dup9440|chr10:68027220-68027581:-|1.0260765240894345|0.0633031472531049|4.02|151.0|21|2|anti-sense REV__L1MC5_dup9440|chr10:68027220-68027581:-|1.0260765240894345|0.0633031472531049|4.02|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 523.3026733398438 2 523.303655 1044.59276 NaN NaN NaN NaN NaN NaN NaN 80.429 1 84.074 83.574 84.574 3.6446 0 0 0 0.37476 1 19086 19086 6.7232 0 1 + 26119 27099 16298 16307 30477 30477 0.07224530363282611 LTSLTRRQ 8 Unmodified _LTSLTRRQ_ 0 0 0 L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7908630371094 2 487.790715 973.566878 0.26182 0.00012771 0.056221 2.7424E-05 0.31804 0.00015514 487.79045031838666 77.051 0.085983 77.051 77.008 77.094 0 9 6 2 0 0 0 0.82752 1 17997 17997 2.3027 0.4585 1 120510 26120 14310 16299 16308 30478 30478 0.07903680911658739 LTSLTRRQ 8 Unmodified _LTSLTRRQ_ 0 0 0 L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.79034423828125 2 487.790715 973.566878 0.26458 0.00012906 -0.043388 -2.1164E-05 0.22119 0.00010789 487.7906325045779 77.856 0.38815 77.856 77.755 78.143 0 79 42 2 0 0 0 0.82752 1 18284 18284 2.3027 0.24298 1 275440 26121 14310 16299 16308 30479 30479 0.07903680911658739 LTSLTRRQ 8 Unmodified _LTSLTRRQ_ 0 0 0 L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7905578613281 2 487.790715 973.566878 0.26686 0.00013017 0.035174 1.7157E-05 0.30203 0.00014733 487.7906714784059 78.707 0.14406 78.707 78.667 78.811 0 24 15 2 0 0 0 0.82752 1 18465 18465 2.3027 2.3027 1 314720 26122 14310 16299 16308 30480 30480 0.07903680911658739 LTSLTRRQ 8 Unmodified _LTSLTRRQ_ 0 0 0 L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7911376953125 2 487.790715 973.566878 0.26968 0.00013155 -0.039559 -1.9297E-05 0.23012 0.00011225 487.79067043111513 79.667 0.22739 79.667 79.551 79.778 0 33 20 2 0 0 0 0.82752 1 18737 18737 2.3027 0.4585 1 178960 26123 14310 16299 16308 30481 30481 0.07903680911658739 LTSLTRRQ 8 Unmodified _LTSLTRRQ_ 0 0 0 L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 487.790715 973.566878 0.25784 0.00012577 -0.12029 -5.8677E-05 0.13755 6.7095E-05 487.79059739725756 73.754 0.082321 77.058 77.014 77.097 3.3048 0.015673 -0.00029756 NaN 2.3027 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 52092 26124 14310 16299 16308 0.07903680911658739 LTSLTRRQ 8 Unmodified _LTSLTRRQ_ 0 0 0 L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 487.790715 973.566878 0.17791 8.6782E-05 0.69855 0.00034075 0.87646 0.00042753 487.7910261953364 73.783 0.16541 77.019 76.956 77.122 3.2363 -0.023704 0.00050128 NaN 2.3027 18 17 2 NaN NaN NaN NaN 0 NaN NaN 0 43444 26125 14310 16299 16308 0.07903680911658739 LTSLWKAVLH 10 Unmodified _LTSLWKAVLH_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-3|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-3|DNAH9 MULTI-MSMS UPN48_class_I_Rep_2 6 584.8499755859375 2 584.347866 1166.68118 0.48108 0.00028112 0.37921 0.00022159 0.86029 0.00050271 584.3479812253202 108.69 0.77367 112.36 112.23 113 3.6746 192 84 3 0 0 0 0.54822 1 25947 25947 5.7319 1.4026 1 44769000 + 26126 17544 16300 16309 30482 30482 0.10450570673742732 LTSPPLPPLG 10 Unmodified _LTSPPLPPLG_ 0 0 0 ENST00000368026.10_1_1:160970072-160970453:-|nuORF ENST00000368026.10_1_1:160970072-160970453:-|nuORF ENST00000368026.10_1_1:160970072-160970453:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955017089844 2 496.294768 990.574983 0.15461 7.6734E-05 1.4735 0.0007313 1.6281 0.00080803 496.29543604503584 34.912 0.038986 34.912 34.9 34.939 0 6 2 3 0 0 0 0.56281 1 6300 6300 1.8442 0 1 2097000 26127 6361 16301 16310 30483 30483 0.07931815108429419 LTSSLMIWMF 10 Unmodified _LTSSLMIWMF_ 0 0 0 L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|204|1|anti-sense L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|204|1|anti-sense L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|204|1|anti-sense MSMS UPN48_class_I_Rep_1 5 614.8093872070312 2 614.80887 1227.60319 NaN NaN NaN NaN NaN NaN NaN 32.867 1 36.394 35.894 36.894 3.5266 0 0 0 0.53105 1 5052 5052 1.8442 0.19162 1 26128 15133 16302 16311 30484 30484 -0.0015094629818577232 LTSSWHFCLY 10 Unmodified _LTSSWHFCLY_ 0 0 0 REV__Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|93|1|anti-sense REV__Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|93|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 628.7923583984375 2 628.792066 1255.56958 0.29465 0.00018528 1.8654 0.001173 2.1601 0.0013582 628.7931817580369 46.86 0.5547 50.212 50.023 50.577 3.3515 63 41 2 0 0 0 0.56078 1 10033 10033 3.2813 0.28607 1 85320 + 26129 32466 16303 16312 30485 30485 -0.04798231745689918 LTSVLLHLS 9 Unmodified _LTSVLLHLS_ 0 0 0 L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense MSMS UPN48_class_I_Rep_1 5 491.79852294921875 2 491.800217 981.585882 NaN NaN NaN NaN NaN NaN NaN 68.165 1 71.616 71.116 72.116 3.4517 0 0 0 0.10315 1 15722 15722 24.021 0 1 26130 11946 16304 16313 30486 30486 0.09435217482723601 LTSVLLHLS 9 Unmodified _LTSVLLHLS_ 0 0 0 L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.7997131347656 2 491.800217 981.585882 0.27967 0.00013754 0.36027 0.00017718 0.63993 0.00031472 491.80035192346185 67.669 0.44624 71.166 70.84 71.286 3.4964 71 40 2 0 0 0 0.11683 1 15482 15482 30.637 1.555 1 433590 26131 11946 16304 16313 30487 30487 0.09435217482723601 LTSVLLHLS 9 Unmodified _LTSVLLHLS_ 0 0 0 L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense L1MD1_dup4265|chr10:21567121-21567815:-|1.1623494103692027|0.0048801901555611|7.9|150.0|30|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.80047607421875 2 491.800217 981.585882 0.29692 0.00014603 -0.096828 -4.762E-05 0.20009 9.8406E-05 491.8002039840416 67.509 0.6881 71.016 70.746 71.434 3.5077 103 61 3 0 0 0 0.082592 2 15490 15362;15490 37.974 1.847 1 469900 26132 11946 16304 16313 30488;30489 30489 0.09435217482723601 LTTDFSKEDIQ 11 Unmodified _LTTDFSKEDIQ_ 0 0 0 L1MB3_dup303|chr1:35968258-35969146:-|4.256489046974848|0.1285856303310902|5.05|151.0|12|2|sense L1MB3_dup303|chr1:35968258-35969146:-|4.256489046974848|0.1285856303310902|5.05|151.0|12|2|sense L1MB3_dup303|chr1:35968258-35969146:-|4.256489046974848|0.1285856303310902|5.05|151.0|12|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 648.9894409179688 2 648.819532 1295.62451 0.44618 0.00028949 1.4198 0.00092121 1.866 0.0012107 648.8204003791822 44.376 0.38023 47.889 47.766 48.146 3.5132 35 25 2 0 0 0 22.551 1 8511 8511 2.4985 0.84587 1 179020 26133 10407 16305 16314 30490 30490 -0.011475664640784089 LTTEPFKTR 9 Unmodified _LTTEPFKTR_ 0 0 0 REV__ENSG00000154175|ENST00000471714|ABI3BP REV__ENSG00000154175|ENST00000471714|ABI3BP MULTI-MSMS UPN47_class_I_Rep_1 2 546.8065185546875 2 546.806031 1091.59751 0.1866 0.00010203 0.22601 0.00012359 0.41261 0.00022562 546.8061523921064 46.7 0.081413 50.4 50.343 50.425 3.6999 7 5 2 0 0 0 0.48643 1 9928 9928 2.0598 0 1 39982 + 26134 19730 16306 16315 30491 30491 0.05537414506034111 LTTEPFKTR 9 Unmodified _LTTEPFKTR_ 0 0 0 REV__ENSG00000154175|ENST00000471714|ABI3BP REV__ENSG00000154175|ENST00000471714|ABI3BP MULTI-MATCH UPN47_class_I_Rep_2 3 2 546.806031 1091.59751 0.29177 0.00015954 1.2962 0.00070878 1.588 0.00086832 547.3082412900432 47.415 0.092873 50.764 50.71 50.803 3.3492 0.18182 0.00073898 NaN 2.0598 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 55715 + 26135 19730 16306 16315 0.05537414506034111 LTTHKFIH 8 Unmodified _LTTHKFIH_ 0 0 0 nc|ENSG00000160352|Q96N38-3|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 MSMS UPN47_class_I_Rep_1 2 498.7853698730469 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 67.397 1 70.758 70.258 71.258 3.3611 0 0 0 0.40625 1 16206 16206 2.3027 0.24298 1 26136 3870 16307 16316 30492 30492 0.05729483888330833 LTTILFIAKV 10 Unmodified _LTTILFIAKV_ 0 0 0 REV__Charlie1a_dup5747|chr22:37873872-37874077:-|1.3591107992427236|0.3662487098863969|1.89|151.0|7|3|sense REV__Charlie1a_dup5747|chr22:37873872-37874077:-|1.3591107992427236|0.3662487098863969|1.89|151.0|7|3|sense MSMS UPN48_class_I_Rep_2 6 559.768310546875 2 559.862818 1117.71108 NaN NaN NaN NaN NaN NaN NaN 113.05 1 116.71 116.21 117.21 3.6648 0 0 0 0.53105 1 26962 26962 0.40072 0 1 + 26137 17347 16308 16317 30493 30493 0.156935096190864 LTTKERHNE 9 Unmodified _LTTKERHNE_ 0 0 0 REV__ENST00000471789.1_1_9:123594085-123605145:-|nuORF REV__ENST00000471789.1_1_9:123594085-123605145:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 564.7718505859375 2 564.293819 1126.57309 0.33765 0.00019054 -0.048996 -2.7648E-05 0.28866 0.00016289 564.7945977998085 32.461 0.041027 36.15 36.112 36.153 3.6896 6 4 2 0 0 0 0.12462 1 4933 4933 1.8442 0 1 31720 + 26138 18048 16309 16318 30494 30494 0.014861543525057641 LTTKERHNE 9 Unmodified _LTTKERHNE_ 0 0 0 REV__ENST00000471789.1_1_9:123594085-123605145:-|nuORF REV__ENST00000471789.1_1_9:123594085-123605145:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 564.293819 1126.57309 0.48586 0.00027417 1.4655 0.00082695 1.9513 0.0011011 564.2946741838443 32.795 0.036171 36.444 36.415 36.451 3.6497 0.14705 0.00059395 NaN 1.8442 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 52334 + 26139 18048 16309 16318 0.014861543525057641 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 602.4108276367188 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 54.168 1 54.168 53.668 54.668 0 0 0 0 0.53105 1 11709 11709 0 0 1 + 26140 28227 16310 16319 30495 30495 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 602.69189453125 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 116 1 116 115.5 116.5 0 0 0 0 0.53105 1 28703 28703 0 0 1 + 26141 28227 16310 16319 30496 30496 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 602.4105834960938 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 116.41 1 116.41 115.91 116.91 0 0 0 0 0.53105 1 28814 28814 0 0 1 + 26142 28227 16310 16319 30497 30497 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 602.411376953125 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 112.9 1 116.47 115.97 116.97 3.572 0 0 0 0.53105 1 27845 27845 0 0 1 + 26143 28227 16310 16319 30498 30498 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 602.4114379882812 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 113.58 1 117.09 116.59 117.59 3.5109 0 0 0 0.53105 1 27630 27630 0 0 1 + 26144 28227 16310 16319 30499 30499 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 602.4110107421875 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 113.75 1 117.26 116.76 117.76 3.5109 0 0 0 0.53105 1 27679 27679 0 0 1 + 26145 28227 16310 16319 30500 30500 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 602.2101440429688 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.54 117.04 118.04 3.5109 0 0 0 0.53105 1 27753 27753 0 0 1 + 26146 28227 16310 16319 30501 30501 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 602.411376953125 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 114.09 1 117.6 117.1 118.1 3.5109 0 0 0 0.53105 1 27771 27771 0 0 1 + 26147 28227 16310 16319 30502 30502 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 602.4122924804688 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 114.31 1 117.82 117.32 118.32 3.5109 0 0 0 0.53105 1 27832 27832 0 0 1 + 26148 28227 16310 16319 30503 30503 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 602.1943359375 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 115.59 1 119.08 118.58 119.58 3.4965 0 0 0 0.53105 1 28185 28185 0 0 1 + 26149 28227 16310 16319 30504 30504 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_3 4 602.4115600585938 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 110.69 1 114.21 113.71 114.71 3.529 0 0 0 0.53105 1 27159 27159 0 0 1 + 26150 28227 16310 16319 30505 30505 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN47_class_I_Rep_3 4 602.4118041992188 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 113.01 1 116.52 116.02 117.02 3.5098 0 0 0 0.53105 1 27710 27710 0 0 1 + 26151 28227 16310 16319 30506 30506 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN48_class_I_Rep_1 5 602.41162109375 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 110.8 1 114.43 113.93 114.93 3.6326 0 0 0 0.53105 1 26886 26886 0 0 1 + 26152 28227 16310 16319 30507 30507 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 602.4102783203125 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 110.76 1 114.43 113.93 114.93 3.669 0 0 0 0.53105 1 26351 26351 0 0 1 + 26153 28227 16310 16319 30508 30508 0.21415077179017317 LTTKKTKKKK 10 Unmodified _LTTKKTKKKK_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 602.4108276367188 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 111.15 1 114.82 114.32 115.32 3.6666 0 0 0 0.53105 1 26438 26438 0 0 1 + 26154 28227 16310 16319 30509 30509 0.21415077179017317 LTTLINIGGF 10 Unmodified _LTTLINIGGF_ 0 0 0 REV__L1MD2_dup5894|chrX:19816799-19817515:-|1.334828424595657|0.0029749406148791|8.81|150.0|55|3|anti-sense REV__L1MD2_dup5894|chrX:19816799-19817515:-|1.334828424595657|0.0029749406148791|8.81|150.0|55|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 524.8052978515625 2 524.8055 1047.59645 0.42623 0.00022369 -0.39678 -0.00020823 0.029447 1.5454E-05 524.805154147834 64.438 0.87363 67.913 67.679 68.552 3.4743 98 65 2 0 0 0 0.56078 1 14763 14763 3.2813 3.2813 1 351090 + 26155 27417 16311 16320 30510 30510 0.07455200137133033 LTTLPRVVS 9 Unmodified _LTTLPRVVS_ 0 0 0 AluJb_dup78455|chr11:67188509-67188810:+|1.1344317086349678|0.0294117529190499|5.27|151.0|20|2|anti-sense AluJb_dup78455|chr11:67188509-67188810:+|1.1344317086349678|0.0294117529190499|5.27|151.0|20|2|anti-sense AluJb_dup78455|chr11:67188509-67188810:+|1.1344317086349678|0.0294117529190499|5.27|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.3056640625 2 493.305667 984.596781 0.19817 9.776E-05 1.3707 0.00067619 1.5689 0.00077395 493.30568202408597 63.995 0.53197 67.169 67.015 67.547 3.1741 61 38 3 0 0 0 0.44742 1 15257 15257 5.2969 0 1 95045 26156 70 16312 16321 30511 30511 0.10386619857013102 LTTPKRRV 8 Unmodified _LTTPKRRV_ 0 0 0 REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|56|3|sense REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|56|3|sense MSMS UPN47_class_I_Rep_3 4 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 92.098 1 95.502 95.002 96.002 3.4034 0 0 0 0.40643 1 23004 23004 2.0598 1.3694 1 + 26157 24045 16313 16322 30512 30512 0.12232861670997863 LTTPPLSTPP 10 Unmodified _LTTPPLSTPP_ 0 0 0 REV__ENST00000565270.1_1_16:57798121-57798289:-|nuORF REV__ENST00000565270.1_1_16:57798121-57798289:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.2967529296875 2 512.289682 1022.56481 0.32137 0.00016463 3.3952 0.0017393 3.7165 0.0019039 512.2896294540047 53.061 0.58555 56.255 56.078 56.664 3.1948 59 29 3 0 0 0 0.51565 1 11945 11945 10.074 0 1 185960 + 26158 23058 16314 16323 30513 30513 0.05443207383189019 LTTSVLDLL 9 Unmodified _LTTSVLDLL_ 0 0 0 L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|103|3|anti-sense L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|103|3|anti-sense L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|103|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.792236328125 2 487.792058 973.569563 0.26886 0.00013115 -1.6152 -0.00078791 -1.3464 -0.00065676 487.7910751512322 75.072 0.50481 78.385 77.984 78.489 3.3127 99 57 2 0 0 0 0.46434 1 18420 18420 4.3292 0.38484 1 230380 26159 11945 16315 16324 30514 30514 0.08172091525955238 LTTSVLDLL 9 Unmodified _LTTSVLDLL_ 0 0 0 L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|103|3|anti-sense L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|103|3|anti-sense L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|103|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.7911071777344 2 487.792058 973.569563 0.18151 8.8541E-05 -1.8528 -0.00090379 -1.6713 -0.00081525 487.7911230354498 75.136 0.6289 78.383 77.892 78.521 3.2464 104 67 2 0 0 0 0.46434 1 18542 18542 4.3292 0.38484 1 155750 26160 11945 16315 16324 30515 30515 0.08172091525955238 LTTVKVRVT 9 Unmodified _LTTVKVRVT_ 0 0 0 L1ME2_dup1741|chr2:135717698-135718355:+|1.856273706116625|0.2912336435264232|2.67|151.0|37|2|anti-sense L1ME2_dup1741|chr2:135717698-135718355:+|1.856273706116625|0.2912336435264232|2.67|151.0|37|2|anti-sense L1ME2_dup1741|chr2:135717698-135718355:+|1.856273706116625|0.2912336435264232|2.67|151.0|37|2|anti-sense MSMS UPN47_class_I_Rep_1 2 508.827392578125 2 508.826766 1015.63898 NaN NaN NaN NaN NaN NaN NaN 61.223 1 64.604 64.104 65.104 3.3815 0 0 0 0.4007 1 14341 14341 0.52476 0 1 26161 12490 16316 16325 30516 30516 0.13178595265389959 LTTYSVVR 8 Unmodified _LTTYSVVR_ 0 0 0 L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|33|1|sense L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|33|1|sense L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|33|1|sense MSMS UPN48_class_I_Rep_3 7 469.7684631347656 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 29.908 1 33.636 33.136 34.136 3.7286 0 0 0 0.40604 1 4251 4251 2.5775 0 1 26162 11249 16317 16326 30517 30517 0.052020714145328384 LTVARKLW 8 Unmodified _LTVARKLW_ 0 0 0 REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|37|2|sense REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|37|2|sense MSMS UPN46_class_I_Rep_3 1 493.81005859375 2 493.810919 985.607286 NaN NaN NaN NaN NaN NaN NaN 63.437 1 63.437 62.937 63.937 0 0 0 0 0.40625 1 14244 14244 2.3027 0 1 + 26163 27412 16318 16327 30518 30518 0.11390647302073376 LTVATILKI 9 Unmodified _LTVATILKI_ 0 0 0 ENST00000303115.7_1_5:35877801-35877897:+|nuORF ENST00000303115.7_1_5:35877801-35877897:+|nuORF ENST00000303115.7_1_5:35877801-35877897:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.3283386230469 2 486.328611 970.642668 0.16144 7.8514E-05 -0.20343 -9.8934E-05 -0.041988 -2.042E-05 486.32833821247704 73.184 0.48901 76.411 76.092 76.581 3.2271 58 41 2 0 0 0 0.30034 1 18055 18055 13.906 0 1 78966 26164 6082 16319 16328 30519 30519 0.15617265039213635 LTVATILKI 9 Unmodified _LTVATILKI_ 0 0 0 ENST00000303115.7_1_5:35877801-35877897:+|nuORF ENST00000303115.7_1_5:35877801-35877897:+|nuORF ENST00000303115.7_1_5:35877801-35877897:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.3285827636719 2 486.328611 970.642668 0.16232 7.8942E-05 -0.094649 -4.6031E-05 0.067674 3.2912E-05 486.3283538475336 73.527 0.60996 76.764 76.546 77.156 3.2363 74 56 2 0 0 0 0.31407 1 18168 18168 13.042 0 1 172370 26165 6082 16319 16328 30520 30520 0.15617265039213635 LTVDQFDFA 9 Unmodified _LTVDQFDFA_ 0 0 0 REV__nc|ENSG00000161533|Q15067-3|ACOX1 REV__nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-MSMS UPN47_class_I_Rep_2 3 528.2555541992188 2 528.25584 1054.49713 0.21544 0.00011381 0.059124 3.1233E-05 0.27456 0.00014504 528.2558053177216 78.39 0.38625 81.733 81.408 81.795 3.3428 61 43 2 0 0 0 0.37599 1 19453 19453 9.3831 2.0939 1 137760 + 26166 19906 16320 16329 30521 30521 -0.027942425476112476 LTVDQFDFA 9 Unmodified _LTVDQFDFA_ 0 0 0 REV__nc|ENSG00000161533|Q15067-3|ACOX1 REV__nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-MSMS UPN47_class_I_Rep_2 3 528.3017578125 2 528.25584 1054.49713 0.21802 0.00011517 0.32281 0.00017053 0.54084 0.0002857 528.256008118094 78.482 0.22866 81.825 81.795 82.023 3.3428 32 24 2 0 0 0 0.36392 1 19544 19544 10.074 2.1638 1 96328 + 26167 19906 16320 16329 30522 30522 -0.027942425476112476 LTVDSAHLY 9 Unmodified _LTVDSAHLY_ 0 0 0 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 MULTI-MSMS UPN47_class_I_Rep_1 2 509.7635192871094 2 509.763832 1017.51311 -0.13955 -7.1136E-05 -0.025839 -1.3172E-05 -0.16539 -8.4308E-05 509.76373580808746 41.835 0.91343 45.514 45.182 46.095 3.6792 155 64 3 0 0 0 0.17468 1 8469 8469 23.148 0 1 500660 26168 5420 16321 16330 30523 30523 0.005054636892737108 LTVETNYNI 9 Unmodified _LTVETNYNI_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 533.774169921875 2 533.774396 1065.53424 0.38109 0.00020341 -0.79937 -0.00042668 -0.41829 -0.00022327 533.7739807013019 77.111 0.6842 80.526 80.149 80.833 3.4149 100 60 2 0 0 0 0.11355 2 19090 19090;19130 31.268 3.3906 1 217330 26169 11901 16322 16331 30524;30525 30524 0.004094289981367183 LTVETNYNI 9 Unmodified _LTVETNYNI_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 533.77392578125 2 533.774396 1065.53424 0.36469 0.00019466 -0.65891 -0.00035171 -0.29422 -0.00015704 533.7740796821422 77.293 0.59203 80.625 80.319 80.911 3.3315 97 60 2 0 0 0 0.19147 2 19192 19118;19192 21.537 3.3906 1 170650 26170 11901 16322 16331 30526;30527 30527 0.004094289981367183 LTVETNYNI 9 Unmodified _LTVETNYNI_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|18|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 533.774396 1065.53424 0.36555 0.00019512 -1.4832 -0.00079169 -1.1176 -0.00059657 534.2740007420804 76.983 0.067055 80.315 80.252 80.319 3.3315 -0.10584 -0.00072363 NaN 31.268 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 55143 26171 11901 16322 16331 0.004094289981367183 LTVFSMSAEA 10 Unmodified _LTVFSMSAEA_ 0 0 0 REV__MLT1F_dup3367|chr15:42172047-42172571:+|1.0314656270663602|0.2082078026983679|2.31|151.0|29|2|anti-sense REV__MLT1F_dup3367|chr15:42172047-42172571:+|1.0314656270663602|0.2082078026983679|2.31|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_1 2 528.2564697265625 2 528.257525 1054.5005 NaN NaN NaN NaN NaN NaN NaN 78.478 1 81.924 81.424 82.424 3.4456 0 0 0 0.53105 1 19512 19512 9.3831 2.66 1 + 26172 31705 16323 16332 30528 30528 -0.024573157652412192 LTVGRERI 8 Unmodified _LTVGRERI_ 0 0 0 ENSG00000174804|ENST00000531380|FZD4 ENSG00000174804|ENST00000531380|FZD4 ENSG00000174804|ENST00000531380|FZD4 MULTI-MSMS UPN46_class_I_Rep_3 1 472.2878112792969 2 472.287808 942.561064 0.24595 0.00011616 -0.05371 -2.5367E-05 0.19224 9.0792E-05 472.28773165721674 89.943 0.54649 89.943 89.895 90.441 0 105 42 6 0 0 0 0.82752 1 21728 21728 7.9102 0 1 17200000 26173 4691 16324 16333 30529 30529 0.08748582399982752 LTVLTPVPGSW 11 Unmodified _LTVLTPVPGSW_ 0 0 0 L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|63|2|sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|63|2|sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|63|2|sense MSMS UPN48_class_I_Rep_3 7 585.2520141601562 2 585.331882 1168.64921 NaN NaN NaN NaN NaN NaN NaN 71.387 1 74.907 74.407 75.407 3.5197 0 0 0 0.38417 1 16574 16574 2.9952 0.93549 1 26174 9460 16325 16334 30530 30530 0.07163158199955433 LTVPPWHP 8 Unmodified _LTVPPWHP_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14 ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS UPN46_class_I_Rep_3 1 473.7627868652344 2 473.760895 945.507237 NaN NaN NaN NaN NaN NaN NaN 53.997 1 53.997 53.497 54.497 0 0 0 0 0.40364 1 11660 11660 5.7604 0.52976 1 26175 2349 16326 16335 30531 30531 0.03230409968273307 LTVPVITHC 9 Unmodified _LTVPVITHC_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS UPN47_class_I_Rep_1 2 491.77520751953125 2 491.773145 981.531738 NaN NaN NaN NaN NaN NaN NaN 77.618 1 81.047 80.547 81.547 3.4289 0 0 0 0.35339 1 19266 19266 7.9102 2.6795 1 26176 1091 16327 16336 30532 30532 0.04023302059476919 LTVTRKTNKQK 11 Unmodified _LTVTRKTNKQK_ 0 0 0 L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|52|2|sense;L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|6|1|sense;L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|35|2|sense L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|52|2|sense L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|52|2|sense MSMS UPN47_class_I_Rep_3 4 439.27093505859375 3 439.605137 1315.79358 NaN NaN NaN NaN NaN NaN NaN 38.428 1 41.67 41.17 42.17 3.2414 0 0 0 0.38417 1 7480 7480 1.2148 0.4383 1 26177 14321 16328 16337 30533 30533 0.14831799679927826 LTVVSIVWV 9 Unmodified _LTVVSIVWV_ 0 0 0 ENSG00000100191|ENST00000266086|SLC5A4 ENSG00000100191|ENST00000266086|SLC5A4 ENSG00000100191|ENST00000266086|SLC5A4 MULTI-SECPEP UPN48_class_I_Rep_1 5 508.3021240234375 2 508.312961 1014.61137 0.23636 0.00012015 -2.6313 -0.0013375 -2.3949 -0.0012174 508.8137176539623 51.886 0.031113 55.409 55.383 55.414 3.5227 4 2 2 0 0 0 0.099402 1 10741 10741 18.135 2.2878 1 61583 26178 1479 16329 16338 30534 30534 0.10464692005132292 LTVYFGVQK 9 Unmodified _LTVYFGVQK_ 0 0 0 L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|149|2|anti-sense L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|149|2|anti-sense L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|149|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.80029296875 2 527.800217 1053.58588 0.38815 0.00020486 -0.27008 -0.00014255 0.11807 6.2317E-05 527.8000067512378 78.566 0.42124 81.848 81.546 81.967 3.2816 82 45 2 0 0 0 0.35081 1 19533 19533 10.824 2.2306 1 104720 26179 13555 16330 16339 30535 30535 0.06123217482695509 LTVYLTTV 8 Unmodified _LTVYLTTV_ 0 0 0 REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4 REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4 MSMS UPN47_class_I_Rep_1 2 455.2680969238281 2 455.268219 908.521884 NaN NaN NaN NaN NaN NaN NaN 29.08 1 32.837 32.337 33.337 3.7578 0 0 0 0.40746 1 4568 4568 0.69038 0 1 + 26180 20715 16331 16340 30536 30536 0.06396437325736315 LTWCGKMFV 9 Unmodified _LTWCGKMFV_ 0 0 0 REV__L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|110|1|anti-sense REV__L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|110|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.7695922851562 2 542.769548 1083.52454 0.40643 0.0002206 0.026068 1.4149E-05 0.4325 0.00023475 542.7695154383633 90.047 0.5294 93.673 93.422 93.951 3.6255 108 66 2 0 0 0 0.46869 1 21656 21656 3.9444 1.3669 1 205860 + 26181 24104 16332 16341 30537 30537 -0.013877538125825595 LTWDGPQTL 9 Unmodified _LTWDGPQTL_ 0 0 0 REV__nc|ENSG00000133110|Q15063-7|POSTN REV__nc|ENSG00000133110|Q15063-7|POSTN MULTI-MSMS UPN48_class_I_Rep_2 6 515.7637329101562 2 515.763832 1029.51311 0.32355 0.00016688 -0.24355 -0.00012562 0.080001 4.1261E-05 515.7636041611266 35.162 1.045 38.836 38.506 39.551 3.6735 238 104 3 0 0 0 0.43982 1 5954 5954 5.7319 1.7875 1 713950 + + 26182 17491 16333 16342 30538 30538 -0.00046536310719602625 LTWFYVWV 8 Unmodified _LTWFYVWV_ 0 0 0 REV__L1MB7_dup5821|chr4:105249325-105250380:-|1.253622289370875|0.0505824815845467|4.63|151.0|76|3|anti-sense REV__L1MB7_dup5821|chr4:105249325-105250380:-|1.253622289370875|0.0505824815845467|4.63|151.0|76|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.2922973632812 2 557.292028 1112.5695 0.55178 0.0003075 -0.60152 -0.00033522 -0.049743 -2.7721E-05 557.2915614579083 23.531 0.024221 27.171 27.16 27.185 3.6397 4 2 2 0 0 0 0.82752 1 2585 2585 0.79363 0 1 24107 + 26183 26288 16334 16343 30539 30539 0.01772136316594697 LTWKKPTHL 9 Unmodified _LTWKKPTHL_ 0 0 0 MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.3349609375 2 562.334759 1122.65496 0.50588 0.00028447 0.69853 0.00039281 1.2044 0.00067728 562.3345050649632 108.66 0.44942 112.29 112.17 112.62 3.6355 162 46 4 0 0 0 0.32682 1 26771 26771 12.241 2.8575 1 137640000 26184 15901 16335 16344 30540 30540 0.09854301502286944 LTWKKPTHL 9 Unmodified _LTWKKPTHL_ 0 0 0 MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|31|3|sense MSMS UPN47_class_I_Rep_1 2 562.3343505859375 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.1 1 112.71 112.21 113.21 3.6046 0 0 0 0.37891 1 26882 26882 5.7319 0 1 26185 15901 16335 16344 30541 30541 0.09854301502286944 LTWMPVEAY 9 Unmodified _LTWMPVEAY_ 0 0 0 L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|337|2|anti-sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|337|2|anti-sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|337|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 555.270751953125 2 555.270435 1108.52632 -0.1767 -9.8115E-05 -0.31286 -0.00017372 -0.48956 -0.00027184 555.2702589927196 14.829 0.4935 14.829 14.673 15.166 0 113 60 3 0 0 0 0.45688 1 799 799 4.756 0 1 110020 26186 9797 16336 16345 30542 30542 -0.023604215229852343 LTWPRPPRAR 10 Unmodified _LTWPRPPRAR_ 0 0 0 REV__ENST00000444039.1_1_22:21311393-21318804:+|nuORF REV__ENST00000444039.1_1_22:21311393-21318804:+|nuORF MSMS UPN47_class_I_Rep_2 3 625.36767578125 2 625.367456 1248.72036 NaN NaN NaN NaN NaN NaN NaN 91.878 1 95.343 94.843 95.843 3.4652 0 0 0 0.53105 1 22727 22727 3.5965 0 1 + 26187 22344 16337 16346 30543 30543 0.1059471574797044 LTWRILMF 8 Unmodified _LTWRILMF_ 0 0 0 REV__MER21C_dup3980|chr13:40928784-40929626:+|1.8233371321005971|0.0424156745963547|5.43|151.0|15|2|sense REV__MER21C_dup3980|chr13:40928784-40929626:+|1.8233371321005971|0.0424156745963547|5.43|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 540.292236328125 2 540.307155 1078.59976 NaN NaN NaN NaN NaN NaN NaN 66.707 1 70.159 69.659 70.659 3.4516 0 0 0 0.40364 1 15274 15274 5.7604 0 1 + 26188 31239 16338 16347 30544 30544 0.06360171710161922 LTWYQQKP 8 Unmodified _LTWYQQKP_ 0 0 0 nc|ENSG00000243063|A0A075B6H7|IGKV3-7 nc|ENSG00000243063|A0A075B6H7|IGKV3-7 nc|ENSG00000243063|A0A075B6H7|IGKV3-7 MULTI-SECPEP UPN47_class_I_Rep_2 3 531.7516479492188 2 532.282192 1062.54983 -0.10488 -5.5826E-05 -1.4263 -0.00075917 -1.5311 -0.000815 532.2816250404899 13.353 0.095809 16.741 16.693 16.789 3.388 14 10 2 0 0 0 0.72333 1 313 313 0.69038 0 1 18545 26189 16835 16339 16348 30545 30545 0.02105760305835247 LTWYTTMVL 9 Unmodified _LTWYTTMVL_ 0 0 0 Tigger3b_dup4231|chr10:87942281-87943403:+|2.786133275381761|0.1101872132624404|4.66|151.0|1|1|sense Tigger3b_dup4231|chr10:87942281-87943403:+|2.786133275381761|0.1101872132624404|4.66|151.0|1|1|sense Tigger3b_dup4231|chr10:87942281-87943403:+|2.786133275381761|0.1101872132624404|4.66|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.7979736328125 2 564.293911 1126.57327 0.50789 0.0002866 1.8929 0.0010682 2.4008 0.0013548 564.7964734911686 28.657 0.085707 32.214 32.177 32.262 3.5571 11 8 2 0 0 0 0.48846 1 3865 3865 1.8442 0.19162 1 60237 26190 33394 16340 16349 30546 30546 0.01504438028155164 LTYKWELI 8 Unmodified _LTYKWELI_ 0 0 0 L1PB4_dup6559|chr16:23909485-23909844:-|1.798166167597374|0.0020956785361399|9.74|151.0|6|2|sense;L1PA15_dup2141|chr4:128966846-128967948:-|2.0306328165853182|0.0483774873828693|5.39|151.0|31|3|sense L1PB4_dup6559|chr16:23909485-23909844:-|1.798166167597374|0.0020956785361399|9.74|151.0|6|2|sense L1PB4_dup6559|chr16:23909485-23909844:-|1.798166167597374|0.0020956785361399|9.74|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 533.2947387695312 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 71.723 1 74.942 74.442 75.442 3.2188 0 0 0 0.14178 1 17615 17615 48.346 6.2513 1 26191 13898 16341 16350 30547 30547 0.060921016254724236 LTYLLQLTHL 10 Unmodified _LTYLLQLTHL_ 0 0 0 ENST00000354852.5_1_11:5664972-5665041:+|nuORF ENST00000354852.5_1_11:5664972-5665041:+|nuORF ENST00000354852.5_1_11:5664972-5665041:+|nuORF MSMS UPN47_class_I_Rep_2 3 405.5749206542969 3 405.576296 1213.70706 NaN NaN NaN NaN NaN NaN NaN 91.605 1 95.066 94.566 95.566 3.4613 0 0 0 0.53105 1 22667 22667 3.8763 0.88109 1 26192 6279 16342 16351 30548 30548 0.10875420125375967 LTYLLQNSL 9 Unmodified _LTYLLQNSL_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-MSMS UPN48_class_I_Rep_1 5 532.8029174804688 2 532.802957 1063.59136 0.37302 0.00019875 -0.40176 -0.00021406 -0.028738 -1.5312E-05 532.8026267443291 71.849 0.35693 75.315 75.166 75.523 3.466 51 33 2 0 0 0 0.279 1 16834 16834 15.248 0 1 102130 26193 5693 16343 16352 30549 30549 0.062108962745242025 LTYLLQNSL 9 Unmodified _LTYLLQNSL_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-MSMS UPN48_class_I_Rep_3 7 532.802734375 2 532.802957 1063.59136 0.57468 0.00030619 -0.20781 -0.00011072 0.36687 0.00019547 532.8026016698457 71.679 0.50873 75.206 74.957 75.466 3.5266 57 47 2 0 0 0 0.20317 1 16667 16667 20.415 0 1 128460 26194 5693 16343 16352 30550 30550 0.062108962745242025 LTYNLELTY 9 Unmodified _LTYNLELTY_ 0 0 0 L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|16|1|sense L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|16|1|sense L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 565.2926635742188 2 565.292422 1128.57029 0.48916 0.00027652 0.7238 0.00040916 1.213 0.00068568 565.2920654588554 69.403 0.42958 72.924 72.684 73.114 3.5216 59 37 2 0 0 0 0.15547 1 16095 16095 24.991 2.2547 1 153010 26195 15280 16344 16353 30551 30551 0.011148861750143624 LTYRNWQI 8 Unmodified _LTYRNWQI_ 0 0 0 MLT1F2_dup5837|chr21:39301213-39301740:+|1.1140812125331556|0.0365832404627366|4.93|151.0|17|3|sense MLT1F2_dup5837|chr21:39301213-39301740:+|1.1140812125331556|0.0365832404627366|4.93|151.0|17|3|sense MLT1F2_dup5837|chr21:39301213-39301740:+|1.1140812125331556|0.0365832404627366|4.93|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.796142578125 2 547.293091 1092.57163 0.38826 0.00021249 1.6178 0.00088542 2.0061 0.0010979 547.7957878228723 55.467 0.69669 58.946 58.664 59.361 3.4785 69 40 3 0 0 0 0.82752 1 12628 12628 10.824 1.4408 1 118880 26196 16400 16345 16354 30552 30552 0.029045650544276214 LTYRNWQI 8 Unmodified _LTYRNWQI_ 0 0 0 MLT1F2_dup5837|chr21:39301213-39301740:+|1.1140812125331556|0.0365832404627366|4.93|151.0|17|3|sense MLT1F2_dup5837|chr21:39301213-39301740:+|1.1140812125331556|0.0365832404627366|4.93|151.0|17|3|sense MLT1F2_dup5837|chr21:39301213-39301740:+|1.1140812125331556|0.0365832404627366|4.93|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.7957153320312 2 547.293091 1092.57163 0.40084 0.00021938 1.3236 0.00072441 1.7245 0.00094379 547.7954275856148 55.889 0.72522 59.067 58.742 59.467 3.1779 83 49 3 0 0 0 0.82752 2 12802 12802;12818 7.9102 1.187 1 128410 26197 16400 16345 16354 30553;30554 30553 0.029045650544276214 LTYTLPRTE 9 Unmodified _LTYTLPRTE_ 0 0 0 REV__L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|44|1|sense REV__L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|44|1|sense MSMS UPN46_class_I_Rep_3 1 547.3123168945312 2 547.298039 1092.58152 NaN NaN NaN NaN NaN NaN NaN 86.918 1 86.918 86.418 87.418 0 0 0 0 0.38639 1 20799 20799 3.9444 1.0552 1 + 26198 28868 16346 16355 30555 30555 0.038937082691290925 LTYVQETLL 9 Unmodified _LTYVQETLL_ 0 0 0 L1MEi_dup500|chr2:45472749-45474306:-|1.1500743987163875|0.0195948720505909|5.88|151.0|59|3|sense L1MEi_dup500|chr2:45472749-45474306:-|1.1500743987163875|0.0195948720505909|5.88|151.0|59|3|sense L1MEi_dup500|chr2:45472749-45474306:-|1.1500743987163875|0.0195948720505909|5.88|151.0|59|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 540.7716674804688 2 540.30279 1078.59103 0.40852 0.00022072 -0.3217 -0.00017381 0.086821 4.691E-05 540.3026053309617 77.07 0.14847 80.581 80.452 80.6 3.5102 25 16 2 0 0 0 0.11446 1 18325 18325 14.405 2.1647 1 154120 26199 13460 16347 16356 30556 30556 0.05487476554662862 LTYVQETLL 9 Unmodified _LTYVQETLL_ 0 0 0 L1MEi_dup500|chr2:45472749-45474306:-|1.1500743987163875|0.0195948720505909|5.88|151.0|59|3|sense L1MEi_dup500|chr2:45472749-45474306:-|1.1500743987163875|0.0195948720505909|5.88|151.0|59|3|sense L1MEi_dup500|chr2:45472749-45474306:-|1.1500743987163875|0.0195948720505909|5.88|151.0|59|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 540.30279 1078.59103 0.58982 0.00031868 -0.033871 -1.83E-05 0.55595 0.00030038 540.3027672697199 76.69 0.16074 80.273 80.165 80.326 3.5831 -0.15393 9.668E-05 NaN 14.405 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 117000 26200 13460 16347 16356 0.05487476554662862 LTYVRMAVIK 10 Unmodified _LTYVRMAVIK_ 0 0 0 L1M2_dup7947|chr15:50722796-50723472:+|1.0108824799810712|0.0992894776162625|3.35|151.0|14|2|sense L1M2_dup7947|chr15:50722796-50723472:+|1.0108824799810712|0.0992894776162625|3.35|151.0|14|2|sense L1M2_dup7947|chr15:50722796-50723472:+|1.0108824799810712|0.0992894776162625|3.35|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 597.3570556640625 2 597.357376 1192.7002 NaN NaN NaN NaN NaN NaN NaN 86.649 1 86.649 86.149 87.149 0 0 0 0 0.53105 1 20720 20720 1.4819 0 1 26201 8710 16348 16357 30557 30557 0.11155783973140387 LTYWLLKSIWF 11 Unmodified _LTYWLLKSIWF_ 0 0 0 L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|106|1|anti-sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|106|1|anti-sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|106|1|anti-sense MSMS UPN47_class_I_Rep_2 3 490.2758483886719 3 490.611229 1468.81186 NaN NaN NaN NaN NaN NaN NaN 38.7 1 42.079 41.579 42.579 3.3785 0 0 0 0.38417 1 7521 7521 0.50596 0 1 26202 10652 16349 16358 30558 30558 0.09620541601930199 LVAALRAW 8 Unmodified _LVAALRAW_ 0 0 0 ENSG00000229972|ENST00000440739|IQCF3 ENSG00000229972|ENST00000440739|IQCF3 ENSG00000229972|ENST00000440739|IQCF3 MSMS UPN47_class_I_Rep_1 2 450.274658203125 2 450.276712 898.538872 NaN NaN NaN NaN NaN NaN NaN 85.503 1 89.095 88.595 89.595 3.5914 0 0 0 0.40738 1 21351 21351 0.79363 0 1 26203 5674 16350 16359 30559 30559 0.08554402722211307 LVAAQKQHWN 10 Unmodified _LVAAQKQHWN_ 0 0 0 REV__MER21B_dup1377|chr9:88429168-88429969:-|1.151864762557423|0.0095620154667905|6.91|151.0|26|3|sense REV__MER21B_dup1377|chr9:88429168-88429969:-|1.151864762557423|0.0095620154667905|6.91|151.0|26|3|sense MSMS UPN47_class_I_Rep_3 4 597.8223876953125 2 597.822547 1193.63054 NaN NaN NaN NaN NaN NaN NaN 60.931 1 64.096 63.596 64.596 3.1651 0 0 0 0.53105 1 14339 14339 3.2813 0 1 + 26204 31193 16351 16360 30560 30560 0.0414704134875592 LVAAQQLAGL 10 Unmodified _LVAAQQLAGL_ 0 0 0 REV__LTR12C_dup606|chr4:9143404-9144791:+|1.0571129813178115|0.1827540965649315|2.53|151.0|47|1|anti-sense REV__LTR12C_dup606|chr4:9143404-9144791:+|1.0571129813178115|0.1827540965649315|2.53|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_3 4 492.3109436035156 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 58.33 1 61.496 60.996 61.996 3.1658 0 0 0 0.53105 1 13546 13546 3.2813 0 1 + 26205 30821 16352 16361 30561 30561 0.08914333339953373 LVAKKKKH 8 Unmodified _LVAKKKKH_ 0 0 0 REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 476.3268737792969 2 476.326737 950.63892 0.25655 0.0001222 -0.11735 -5.5895E-05 0.1392 6.6306E-05 476.32659447286477 109.69 0.53139 109.69 109.58 110.11 0 62 43 2 0 0 0 0.82752 2 26970 26970;27015 0.69038 0 1 2217700 + 26206 18314 16353 16362 30562;30563 30562 0.161626400560408 LVAKKKKH 8 Unmodified _LVAKKKKH_ 0 0 0 REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 476.3266906738281 2 476.326737 950.63892 0.10137 4.8287E-05 0.62839 0.00029932 0.72977 0.00034761 476.32704040210734 109.62 0.16314 113.26 113.2 113.36 3.6321 38 20 2 0 0 0 0.82752 1 26619 26619 0.69038 0 1 670440 + 26207 18314 16353 16362 30564 30564 0.161626400560408 LVAKKKKH 8 Unmodified _LVAKKKKH_ 0 0 0 REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 476.326737 950.63892 0.21456 0.0001022 0.7132 0.00033972 0.92776 0.00044192 476.3271031121875 109.59 0.75923 113.26 113.06 113.81 3.67 0.019232 4.104E-05 NaN 0.69038 161 104 2 NaN NaN NaN NaN 0 NaN NaN 0 1220600 + 26208 18314 16353 16362 0.161626400560408 LVAKNQQEF 9 Unmodified _LVAKNQQEF_ 0 0 0 REV__L1MC3_dup7918|chr10:849217-850182:+|1.533158779648307|0.0153945018484692|6.64|150.0|27|3|sense REV__L1MC3_dup7918|chr10:849217-850182:+|1.533158779648307|0.0153945018484692|6.64|150.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.7904663085938 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.35081 1 12560 12560 10.824 0.75 1 312930 + 26209 26775 16354 16363 30565 30565 0.03144841471953441 LVAKNQQEF 9 Unmodified _LVAKNQQEF_ 0 0 0 REV__L1MC3_dup7918|chr10:849217-850182:+|1.533158779648307|0.0153945018484692|6.64|150.0|27|3|sense REV__L1MC3_dup7918|chr10:849217-850182:+|1.533158779648307|0.0153945018484692|6.64|150.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 538.7911376953125 2 538.790381 1075.56621 0.406 0.00021875 -0.7016 -0.00037801 -0.29559 -0.00015926 538.7900663930279 55.338 1.3768 58.515 57.797 59.174 3.1779 124 83 2 0 0 0 0.46869 1 12826 12826 3.9444 0.3479 1 316940 + 26210 26775 16354 16363 30566 30566 0.03144841471953441 LVALKKVRLDN 11 Unmodified _LVALKKVRLDN_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-SECPEP UPN48_class_I_Rep_2 6 634.87890625 2 634.906079 1267.79761 0.49737 0.00031578 3.4979 0.0022208 3.9953 0.0025366 634.9080918683693 103.52 0.090881 107.23 107.16 107.25 3.7108 18 13 2 0 0 0 22.551 1 24499 24499 2.9952 0 1 17749000 26211 4294 16355 16364 30567 30567 0.17441889173665004 LVALYTVWVA 10 Unmodified _LVALYTVWVA_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-SECPEP UPN47_class_I_Rep_2 3 567.32958984375 2 567.831517 1133.64848 0.54077 0.00030706 -0.19665 -0.00011166 0.34412 0.0001954 567.8313977452195 84 0.69455 87.411 87.288 87.983 3.4116 146 91 2 0 0 0 0.84575 1 21060 21060 6.7232 0.99131 1 296120 26212 1655 16356 16365 30568 30568 0.08700363550906332 LVAMMSFMMS 10 Unmodified _LVAMMSFMMS_ 0 0 0 REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|57|2|anti-sense REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|57|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 574.2728881835938 2 574.254559 1146.49457 -0.10916 -6.2686E-05 -2.3476 -0.0013481 -2.4568 -0.0014108 574.7549260818516 35.03 0.065434 38.294 38.24 38.306 3.2639 6 4 2 0 0 0 0.84575 1 6425 6425 1.6526 0.85899 1 77353 + 26213 25160 16357 16366 30569 30569 -0.07282196864412072 LVAMMSFMMS 10 Unmodified _LVAMMSFMMS_ 0 0 0 REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|57|2|anti-sense REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|57|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 574.254559 1146.49457 0.045766 2.6282E-05 -0.43084 -0.00024741 -0.38508 -0.00022113 574.7553350874128 34.907 0.093746 38.333 38.286 38.379 3.4253 0.019439 0.0016171 NaN 1.6526 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 29648 + 26214 25160 16357 16366 -0.07282196864412072 LVAPSVVVK 9 Unmodified _LVAPSVVVK_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MSMS UPN48_class_I_Rep_1 5 456.30126953125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.906 1 51.428 50.928 51.928 3.5219 0 0 0 0.39598 1 9517 9517 1.6526 0.85899 1 26215 5441 16358 16367 30570 30570 0.1262842283366581 LVAPSVVVK 9 Unmodified _LVAPSVVVK_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MSMS UPN48_class_I_Rep_2 6 456.3011169433594 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 47.661 1 51.397 50.897 51.897 3.7361 0 0 0 0.39598 1 9438 9438 1.6526 0 1 26216 5441 16358 16367 30571 30571 0.1262842283366581 LVAPSVVVK 9 Unmodified _LVAPSVVVK_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MSMS UPN48_class_I_Rep_3 7 456.3009033203125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 45.015 1 48.652 48.152 49.152 3.6372 0 0 0 0.39598 1 8571 8571 1.6526 0 1 26217 5441 16358 16367 30572 30572 0.1262842283366581 LVASDYLLE 9 Unmodified _LVASDYLLE_ 0 0 0 REV__L1MB5_dup11|chr1:1816930-1817513:-|1.2433954144619963|0.1613170790273262|2.95|151.0|15|3|sense REV__L1MB5_dup11|chr1:1816930-1817513:-|1.2433954144619963|0.1613170790273262|2.95|151.0|15|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.7750244140625 2 511.773865 1021.53318 0.27018 0.00013827 3.7308 0.0019093 4.0009 0.0020476 511.77521485676175 74.615 0.11668 78.104 78.071 78.188 3.49 15 10 2 0 0 0 0.46869 1 17629 17629 3.9444 0 1 86497 + 26218 26029 16359 16368 30573 30573 0.023272146292470097 LVASRAVRV 9 Unmodified _LVASRAVRV_ 0 0 0 ENST00000309352.3_1_17:73900754-73901005:-|nuORF ENST00000309352.3_1_17:73900754-73901005:-|nuORF ENST00000309352.3_1_17:73900754-73901005:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.02 1 68.276 67.776 68.776 3.2556 0 0 0 0.38299 1 15528 15528 4.756 0 1 26219 6103 16360 16369 30574 30574 0.12232861670997863 LVASSIVPVPP 11 Unmodified _LVASSIVPVPP_ 0 0 0 REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 REV__nc|ENSG00000152223|Q9HCE0-2|EPG5 MSMS UPN48_class_I_Rep_3 7 539.8573608398438 2 539.828975 1077.6434 NaN NaN NaN NaN NaN NaN NaN 108.19 1 111.87 111.37 112.37 3.6813 0 0 0 0.38417 1 25576 25576 5.2969 1.7004 1 + 26220 19675 16361 16370 30575 30575 0.10768059688280118 LVAVVNVTAL 10 Unmodified _LVAVVNVTAL_ 0 0 0 REV__ENSG00000184986|ENST00000392519|TMEM121 REV__ENSG00000184986|ENST00000392519|TMEM121 MULTI-MSMS UPN47_class_I_Rep_3 4 499.81591796875 2 499.815867 997.617182 0.17368 8.6808E-05 0.13158 6.5764E-05 0.30526 0.00015257 499.81587446112036 61.311 0.6859 64.476 64.23 64.916 3.1651 102 54 3 0 0 0 0.4965 1 14579 14579 12.241 2.8575 1 247820 + 26221 20839 16362 16371 30576 30576 0.11827790516804271 LVCHLTSYAV 10 Unmodified _LVCHLTSYAV_ 0 0 0 L1MEf_dup5136|chr7:72906952-72907490:-|1.1491537652566357|0.0464132272553913|4.63|151.0|41|3|anti-sense;L1MEf_dup5168|chr7:76644295-76644780:+|1.3436692382089317|0.0545107226985125|4.62|151.0|29|2|anti-sense L1MEf_dup5136|chr7:72906952-72907490:-|1.1491537652566357|0.0464132272553913|4.63|151.0|41|3|anti-sense L1MEf_dup5136|chr7:72906952-72907490:-|1.1491537652566357|0.0464132272553913|4.63|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.28857421875 2 553.289159 1104.56377 -0.013486 -7.4617E-06 -0.36812 -0.00020367 -0.3816 -0.00021114 553.2890217986828 36.493 0.83889 40.162 39.714 40.553 3.6692 101 66 2 0 0 0 0.54466 1 6885 6885 6.2058 2.6093 1 115670 26222 13292 16363 16372 30577 30577 0.015666697426013343 LVCMKVTLL 9 Unmodified _LVCMKVTLL_ 0 0 0 ENST00000330236.6_1_6:28116276-28116375:+|nuORF ENST00000330236.6_1_6:28116276-28116375:+|nuORF ENST00000330236.6_1_6:28116276-28116375:+|nuORF MSMS UPN48_class_I_Rep_1 5 510.7589416503906 2 510.303224 1018.5919 NaN NaN NaN NaN NaN NaN NaN 50.337 1 53.861 53.361 54.361 3.5246 0 0 0 0.38784 1 10269 10269 3.5965 0 1 26223 6181 16364 16373 30578 30578 0.08334276398375096 LVCPTNALIY 10 Unmodified _LVCPTNALIY_ 0 0 0 REV__L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|67|2|anti-sense REV__L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|67|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.3233642578125 2 553.79936 1105.58417 NaN NaN NaN NaN NaN NaN NaN 31.888 1 35.422 34.922 35.922 3.5342 0 0 0 0.53105 1 4775 4775 2.7352 0.89096 1 + 26224 27861 16365 16374 30579 30579 0.03559840402431291 LVCRKLFIFL 10 Unmodified _LVCRKLFIFL_ 0 0 0 REV__L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|59|2|anti-sense REV__L1M4_dup17465|chr16:47163975-47165111:-|1.9195775352256093|0.4333959771882449|2.15|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.3894653320312 2 626.385937 1250.75732 0.59988 0.00037576 2.1375 0.0013389 2.7374 0.0017147 626.3874894811144 104.56 0.21893 108.28 108.19 108.41 3.7192 50 30 2 0 0 0 0.55983 1 24714 24714 3.9444 0.3479 1 19374000 + 26225 24393 16366 16375 30580 30580 0.1419725124951583 LVDGYNVHY 9 Unmodified _LVDGYNVHY_ 0 0 0 ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB ENST00000538021.5_2_11:72004413-72018253:-|nuORF ENST00000538021.5_2_11:72004413-72018253:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.261474609375 2 540.261456 1078.50836 0.10764 5.8154E-05 0.81085 0.00043807 0.91849 0.00049622 540.2615472140177 44.635 0.7331 48.335 48.036 48.769 3.6999 115 52 3 0 0 0 0.047711 5 9324 9243;9283;9324;9370;9375 49.933 26.002 1 252730 26226 3920 16367 16376 30581;30582;30583;30584;30585 30583 -0.027754204534630844 LVDGYNVHY 9 Unmodified _LVDGYNVHY_ 0 0 0 ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB ENST00000538021.5_2_11:72004413-72018253:-|nuORF ENST00000538021.5_2_11:72004413-72018253:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 540.2617797851562 2 540.261456 1078.50836 0.16277 8.7936E-05 0.91381 0.0004937 1.0766 0.00058163 540.2616205682272 45.028 0.7718 48.384 48.058 48.83 3.3556 107 45 3 0 0 0 0.10817 3 9476 9384;9476;9519 32.305 14.171 1 265080 26227 3920 16367 16376 30586;30587;30588 30587 -0.027754204534630844 LVDGYNVHY 9 Unmodified _LVDGYNVHY_ 0 0 0 ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB ENST00000538021.5_2_11:72004413-72018253:-|nuORF ENST00000538021.5_2_11:72004413-72018253:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 540.2620239257812 2 540.261456 1078.50836 0.20829 0.00011253 0.74572 0.00040289 0.95401 0.00051541 540.2616126966519 45.068 0.8389 48.312 48.01 48.849 3.2441 124 57 3 0 0 0 0.066633 4 9497 9450;9497;9543;9588 41.84 20.093 1 267570 26228 3920 16367 16376 30589;30590;30591;30592 30590 -0.027754204534630844 LVDGYNVHY 9 Unmodified _LVDGYNVHY_ 0 0 0 ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB ENST00000538021.5_2_11:72004413-72018253:-|nuORF ENST00000538021.5_2_11:72004413-72018253:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 540.261456 1078.50836 0.31837 0.000172 3.079 0.0016635 3.3974 0.0018355 540.7643568754977 48.32 0.039516 48.32 48.285 48.325 0 -0.017439 0.0024176 NaN 49.933 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 70272 26229 3920 16367 16376 -0.027754204534630844 LVDKSTPTLIL 11 Unmodified _LVDKSTPTLIL_ 0 0 0 REV__chr13:32375406-32376670|142|10.07|0.4|4.65|+|ENST00000665585|BRCA2,BRCA2 REV__chr13:32375406-32376670|142|10.07|0.4|4.65|+|ENST00000665585|BRCA2,BRCA2 MSMS UPN47_class_I_Rep_3 4 400.5799560546875 3 400.579706 1198.71729 NaN NaN NaN NaN NaN NaN NaN 104.82 1 108.35 107.85 108.85 3.5308 0 0 0 0.38417 1 25684 25684 3.5927 0.74939 1 + 26230 17437 16368 16377 30593 30593 0.12587983059961516 LVDKVFFME 9 Unmodified _LVDKVFFME_ 0 0 0 L1MC3_dup8734|chr11:46836867-46838220:+|1.382227064463914|0.0078991853504601|7.45|150.0|21|2|sense L1MC3_dup8734|chr11:46836867-46838220:+|1.382227064463914|0.0078991853504601|7.45|150.0|21|2|sense L1MC3_dup8734|chr11:46836867-46838220:+|1.382227064463914|0.0078991853504601|7.45|150.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 564.2869873046875 2 564.293911 1126.57327 NaN NaN NaN NaN NaN NaN NaN 25.312 1 28.879 28.379 29.379 3.5667 0 0 0 0.39428 1 2929 2929 2.0598 0 1 26231 11382 16369 16378 30594 30594 0.015044380281779013 LVDLNGGR 8 Unmodified _LVDLNGGR_ 0 0 0 REV__ENSG00000148677|ENST00000371697|ANKRD1 REV__ENSG00000148677|ENST00000371697|ANKRD1 MSMS UPN46_class_I_Rep_3 1 421.85894775390625 2 422.237784 842.461016 NaN NaN NaN NaN NaN NaN NaN 98.083 1 98.083 97.583 98.583 0 0 0 0 0.40746 1 23878 23878 0.69038 0 1 + 26232 19597 16370 16379 30595 30595 0.03348345066206093 LVDLPASLYF 10 Unmodified _LVDLPASLYF_ 0 0 0 L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|277|2|anti-sense;L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|165|1|anti-sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|277|2|anti-sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|277|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.3135375976562 2 569.313158 1136.61176 0.3628 0.00020655 0.31534 0.00017953 0.67814 0.00038607 569.3133510343761 63.538 0.55493 66.897 66.774 67.329 3.3595 77 47 2 0 0 0 0.47413 1 15109 15109 13.906 3.8321 1 325040 26233 14357 16371 16380 30596 30596 0.04892066934326067 LVDLPASLYF 10 Unmodified _LVDLPASLYF_ 0 0 0 L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|277|2|anti-sense;L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|165|1|anti-sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|277|2|anti-sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|277|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 569.313158 1136.61176 0.52843 0.00030084 -1.7243 -0.00098168 -1.1959 -0.00068084 569.8121940623306 63.515 0.031303 66.989 66.967 66.999 3.4738 -0.054314 -0.0022228 NaN 13.906 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 25642 26234 14357 16371 16380 0.04892066934326067 LVDPAQGVL 9 Unmodified _LVDPAQGVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS UPN47_class_I_Rep_2 3 456.26361083984375 2 456.263468 910.512382 -0.016371 -7.4696E-06 0.024642 1.1243E-05 0.0082705 3.7735E-06 456.26338821195407 56.868 0.97726 60.169 59.759 60.736 3.3009 141 78 3 0 0 0 0.33654 1 13123 13123 11.64 1.4569 1 714300 26235 5784 16372 16381 30597 30597 0.053546690402299646 LVDRVPTL 8 Unmodified _LVDRVPTL_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MULTI-MSMS UPN47_class_I_Rep_1 2 456.7790222167969 2 456.779285 911.544017 -0.32521 -0.00014855 0.33402 0.00015257 0.0088166 4.0272E-06 456.7794836897992 40.901 0.46423 44.573 44.399 44.863 3.6719 49 41 2 0 0 0 0.82752 3 8108 8108;8127;8190 18.146 0 1 56156 26236 5795 16373 16382 30598;30599;30600 30598 0.08470661794183343 LVDRVPTL 8 Unmodified _LVDRVPTL_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS UPN47_class_I_Rep_2 3 456.7796936035156 2 456.779285 911.544017 NaN NaN NaN NaN NaN NaN NaN 41.104 1 44.469 43.969 44.969 3.3655 0 0 0 0.38444 1 8250 8250 13.906 0 1 26237 5795 16373 16382 30601 30601 0.08470661794183343 LVDRVPTL 8 Unmodified _LVDRVPTL_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS UPN47_class_I_Rep_2 3 456.7794189453125 2 456.779285 911.544017 NaN NaN NaN NaN NaN NaN NaN 41.298 1 44.663 44.163 45.163 3.3655 0 0 0 0.35253 1 8309 8309 21.537 0 1 26238 5795 16373 16382 30602 30602 0.08470661794183343 LVDRVPTL 8 Unmodified _LVDRVPTL_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS UPN47_class_I_Rep_2 3 456.77880859375 2 456.779285 911.544017 NaN NaN NaN NaN NaN NaN NaN 41.341 1 44.706 44.206 45.206 3.3655 0 0 0 0.38444 1 8322 8322 13.906 0 1 26239 5795 16373 16382 30603 30603 0.08470661794183343 LVDRVPTL 8 Unmodified _LVDRVPTL_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7792663574219 2 456.779285 911.544017 -0.58287 -0.00026624 0.72457 0.00033097 0.1417 6.4726E-05 456.77952642418575 41.374 0.47141 44.611 44.368 44.84 3.2372 61 44 2 0 0 0 0.82752 3 8367 8367;8378;8427 18.146 0 1 74423 26240 5795 16373 16382 30604;30605;30606 30604 0.08470661794183343 LVDVGIGWRY 10 Unmodified _LVDVGIGWRY_ 0 0 0 REV__L1PA5_dup9169|chr13:48696536-48701520:+|1.2053157210591312|0.1032640766230533|3.55|151.0|201|1|anti-sense REV__L1PA5_dup9169|chr13:48696536-48701520:+|1.2053157210591312|0.1032640766230533|3.55|151.0|201|1|anti-sense MSMS UPN47_class_I_Rep_2 3 589.3197631835938 2 589.321848 1176.62914 NaN NaN NaN NaN NaN NaN NaN 37.881 1 41.269 40.769 41.769 3.3879 0 0 0 0.53105 1 7273 7273 1.4819 0.15237 1 + 26241 28863 16374 16383 30607 30607 0.04789407260000189 LVEAILVLT 9 Unmodified _LVEAILVLT_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MSMS UPN47_class_I_Rep_2 3 485.8120422363281 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 61.035 1 64.3 63.8 64.8 3.2654 0 0 0 0.28335 1 14318 14318 11.64 0 1 26242 1031 16375 16384 30608 30608 0.12501272285282994 LVEAILVLT 9 Unmodified _LVEAILVLT_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MSMS UPN47_class_I_Rep_3 4 485.8122253417969 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 61.049 1 64.214 63.714 64.714 3.1651 0 0 0 0.28335 1 14375 14375 11.64 0 1 26243 1031 16375 16384 30609 30609 0.12501272285282994 LVEAILVLT 9 Unmodified _LVEAILVLT_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 65.418 1 68.598 68.098 69.098 3.1795 0 0 0 0.38299 1 15710 15710 4.756 0 1 26244 1031 16375 16384 30610 30610 0.12501272285282994 LVEDSHTI 8 Unmodified _LVEDSHTI_ 0 0 0 L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|140|2|anti-sense L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|140|2|anti-sense L1PA8A_dup2360|chr20:8382847-8385971:-|6.137584272880391|0.0670171125153639|6.52|151.0|140|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2346496582031 2 457.234907 912.455261 -0.34727 -0.00015879 0.18542 8.4779E-05 -0.16186 -7.4006E-05 457.2348731874281 36.224 0.79566 39.893 39.549 40.345 3.6692 134 57 3 0 0 0 0.82752 2 6676 6676;6789 24.674 0 1 402710 26245 14976 16376 16385 30611;30612 30611 -0.004467982361234135 LVEGDGIPPPI 11 Unmodified _LVEGDGIPPPI_ 0 0 0 ENST00000505081.5_1_5:176942650-176942839:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41 ENST00000505081.5_1_5:176942650-176942839:-|nuORF ENST00000505081.5_1_5:176942650-176942839:-|nuORF MSMS UPN47_class_I_Rep_3 4 553.8080444335938 2 553.808239 1105.60193 NaN NaN NaN NaN NaN NaN NaN 47.142 1 50.386 49.886 50.886 3.2439 0 0 0 0.38417 1 10148 10148 2.9952 0 1 26246 4990 16377 16386 30613 30613 0.05334878928965736 LVELRRGT 8 Unmodified _LVELRRGT_ 0 0 0 ENST00000480412.2_1_X:48933021-48933502:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45 ENST00000480412.2_1_X:48933021-48933502:-|nuORF ENST00000480412.2_1_X:48933021-48933502:-|nuORF MSMS UPN47_class_I_Rep_1 2 472.288330078125 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.882 1 91.538 91.038 92.038 3.6563 0 0 0 0.40746 1 21970 21970 0.69038 0 1 26247 5342 16378 16387 30614 30614 0.08748582400005489 LVEQKTRQL 9 Unmodified _LVEQKTRQL_ 0 0 0 REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 557.8330688476562 2 557.83258 1113.65061 -0.037947 -2.1168E-05 0.00094342 5.2627E-07 -0.037004 -2.0642E-05 557.8326957104548 32.862 0.38172 36.575 36.511 36.893 3.7131 42 28 2 0 0 0 0.49187 1 5705 5705 1.4819 0 1 47942 + 26248 19809 16379 16388 30615 30615 0.09832792288693781 LVEQKTRQL 9 Unmodified _LVEQKTRQL_ 0 0 0 REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.8329467773438 2 557.83258 1113.65061 0.046041 2.5683E-05 -0.019448 -1.0849E-05 0.026593 1.4834E-05 557.8325022948654 33.191 0.4779 36.646 36.477 36.955 3.4547 54 37 2 0 0 0 0.47763 1 5901 5901 2.9952 0 1 56876 + 26249 19809 16379 16388 30616 30616 0.09832792288693781 LVESTYLLY 9 Unmodified _LVESTYLLY_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS UPN47_class_I_Rep_2 3 550.79736328125 2 550.79734 1099.58013 0.41042 0.00022606 -0.42262 -0.00023278 -0.012197 -6.7178E-06 550.7972078799702 71.719 0.45658 75.009 74.811 75.268 3.2899 58 37 2 0 0 0 0.090595 1 17531 17531 36.044 0 1 75476 26250 2833 16380 16389 30617 30617 0.034320741803639976 LVETGDHQY 9 Unmodified _LVETGDHQY_ 0 0 0 REV__ENSG00000164946|ENST00000380880|FREM1 REV__ENSG00000164946|ENST00000380880|FREM1 MULTI-MSMS UPN46_class_I_Rep_3 1 531.248291015625 2 531.248546 1060.48254 0.027259 1.4481E-05 -0.51951 -0.00027599 -0.49225 -0.00026151 531.2483094667667 27.702 0.52154 27.702 27.552 28.073 0 77 40 2 0 0 0 0.16559 1 4183 4183 24.021 0 1 102140 + 26251 20093 16381 16390 30618 30618 -0.04528314695744484 LVFDEKRKRRK 11 Unmodified _LVFDEKRKRRK_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|177|3|sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|177|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 492.6377258300781 3 492.303681 1473.88921 0.26828 0.00013207 -1.572 -0.00077392 -1.3038 -0.00064185 492.30286875849816 100 0.13326 103.76 103.7 103.83 3.7575 24 17 2 0 0 0 0.68081 1 23761 23761 0.45452 0.046251 1 125240 + 26252 25090 16382 16391 30619 30619 0.1712257259080161 LVFDEKRKRRK 11 Unmodified _LVFDEKRKRRK_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|177|3|sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|177|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 492.303681 1473.88921 0.24447 0.00012035 -1.826 -0.00089896 -1.5816 -0.00077861 492.6371873007699 99.993 0.27134 103.85 103.78 104.05 3.8537 0.030846 -0.00021815 NaN 0.45452 61 38 2 NaN NaN NaN NaN 0 NaN NaN 0 151060 + 26253 25090 16382 16391 0.1712257259080161 LVFFFLIVP 9 Unmodified _LVFFFLIVP_ 0 0 0 ENSG00000168615|ENST00000487273|ADAM9;ENSG00000168615.13,ADAM9,chr8,+,I17.1,39076276,39077227|23|5.1|1|intron ENSG00000168615|ENST00000487273|ADAM9 ENSG00000168615|ENST00000487273|ADAM9 MSMS UPN48_class_I_Rep_2 6 547.8366088867188 2 547.836071 1093.65759 NaN NaN NaN NaN NaN NaN NaN 48.839 1 52.556 52.056 53.056 3.7175 0 0 0 0.39326 1 9802 9802 2.3027 0 1 26254 4383 16383 16392 30620 30620 0.11450756907242976 LVFFFVFVW 9 Unmodified _LVFFFVFVW_ 0 0 0 REV__L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|180|2|anti-sense REV__L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|180|2|anti-sense MSMS UPN46_class_I_Rep_3 1 602.3350219726562 2 602.333696 1202.65284 NaN NaN NaN NaN NaN NaN NaN 102.12 1 102.12 101.62 102.62 0 0 0 0 0.40038 1 24919 24919 0.6015 0 1 + 26255 24180 16384 16393 30621 30621 0.059618727644874525 LVFFRKKWR 9 Unmodified _LVFFRKKWR_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MSMS UPN47_class_I_Rep_3 4 640.3930053710938 2 640.392942 1278.77133 NaN NaN NaN NaN NaN NaN NaN 52.583 1 55.788 55.288 56.288 3.2055 0 0 0 0.4007 1 11796 11796 0.52476 0.066424 1 + 26256 19987 16385 16394 30622 30622 0.14309664792813237 LVFFWCDT 8 Unmodified _LVFFWCDT_ 0 0 0 L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_2 3 515.7654418945312 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 45.518 1 48.872 48.372 49.372 3.3534 0 0 0 0.40738 1 9599 9599 0.79363 0 1 26257 11276 16386 16395 30623 30623 -0.050563622402250985 LVFFWCDT 8 Unmodified _LVFFWCDT_ 0 0 0 L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 515.7388305664062 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 31.685 1 34.984 34.484 35.484 3.2991 0 0 0 0.40738 1 5431 5431 0.79363 0 1 26258 11276 16386 16395 30624 30624 -0.050563622402250985 LVFFWCDT 8 Unmodified _LVFFWCDT_ 0 0 0 L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense L1MC2_dup5500|chr17:59743009-59743546:-|2.876804071832876|0.00909048043153|8.31|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7725830078125 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 28.411 1 31.968 31.468 32.468 3.5571 0 0 0 0.40738 1 3798 3798 0.79363 0 1 26259 11276 16386 16395 30625 30625 -0.050563622402250985 LVFHLVYKF 9 Unmodified _LVFHLVYKF_ 0 0 0 L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|167|2|anti-sense L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|167|2|anti-sense L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|167|2|anti-sense MSMS UPN47_class_I_Rep_3 4 583.2608032226562 2 583.342052 1164.66955 NaN NaN NaN NaN NaN NaN NaN 82.713 1 86.05 85.55 86.55 3.337 0 0 0 0.40038 1 20732 20732 0.6015 0 1 26260 13683 16387 16396 30626 30626 0.0938037365042419 LVFILEQLN 9 Unmodified _LVFILEQLN_ 0 0 0 REV__HAL1_dup2357|chr2:47871934-47872235:-|1.491725387620763|0.0082883006365944|7.49|151.0|19|3|anti-sense REV__HAL1_dup2357|chr2:47871934-47872235:-|1.491725387620763|0.0082883006365944|7.49|151.0|19|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 544.7667236328125 2 544.82115 1087.62775 0.45921 0.00025019 0.043502 2.3701E-05 0.50271 0.00027389 544.820792068099 59.651 0.26479 63.168 63.017 63.282 3.5169 30 21 2 0 0 0 0.11705 1 13026 13026 10.824 0 1 76595 + 26261 23409 16388 16397 30627 30627 0.08743773171249813 LVFKPKEQK 9 Unmodified _LVFKPKEQK_ 0 0 0 REV__ENSG00000066629|ENST00000262233|EML1 REV__ENSG00000066629|ENST00000262233|EML1 MULTI-MSMS UPN48_class_I_Rep_1 5 559.3452758789062 2 558.842416 1115.67028 0.45943 0.00025675 -0.2953 -0.00016503 0.16413 9.1721E-05 558.8422049697416 46.505 0.95382 50.025 49.623 50.577 3.5192 106 62 2 0 0 0 0.43153 1 9002 9002 6.2058 6.2058 1 246440 + 26262 17769 16389 16398 30628 30628 0.1170716829947196 LVFMCFGALY 10 Unmodified _LVFMCFGALY_ 0 0 0 REV__ENSG00000163624|ENST00000295887|CDS1 REV__ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS UPN47_class_I_Rep_1 2 582.2852783203125 2 582.285031 1162.55551 0.39939 0.00023256 -0.51623 -0.00030059 -0.11684 -6.8032E-05 582.2845145287071 78.065 0.97888 81.494 81.098 82.077 3.4289 210 97 3 0 0 0 0.53188 2 19305 19305;19540 7.9102 0.73274 1 453690 + 26263 19988 16390 16399 30629;30630 30629 -0.019266004983364837 LVFMCFGALY 10 Unmodified _LVFMCFGALY_ 0 0 0 REV__ENSG00000163624|ENST00000295887|CDS1 REV__ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS UPN47_class_I_Rep_3 4 582.2852172851562 2 582.285031 1162.55551 0.46765 0.0002723 -0.51208 -0.00029818 -0.044433 -2.5872E-05 582.284472431379 78.306 0.98221 81.588 81.16 82.142 3.2816 254 105 3 0 0 0 0.53188 2 19645 19645;19658 7.9102 1.187 1 478270 + 26264 19988 16390 16399 30631;30632 30631 -0.019266004983364837 LVFMSIYK 8 Unmodified _LVFMSIYK_ 0 0 0 L1M7_dup320|chr2:47882048-47882662:-|2.2347797410803625|0.0129238734017594|7.43|151.0|26|1|anti-sense L1M7_dup320|chr2:47882048-47882662:-|2.2347797410803625|0.0129238734017594|7.43|151.0|26|1|anti-sense L1M7_dup320|chr2:47882048-47882662:-|2.2347797410803625|0.0129238734017594|7.43|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7799072265625 2 500.780439 999.546325 NaN NaN NaN NaN NaN NaN NaN 33.665 1 37.325 36.825 37.825 3.6607 0 0 0 0.40659 1 5341 5341 1.8442 0 1 26265 9237 16391 16400 30633 30633 0.046533742076235285 LVFPFVVNHS 10 Unmodified _LVFPFVVNHS_ 0 0 0 L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|138|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|138|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|138|3|anti-sense MSMS UPN48_class_I_Rep_3 7 579.8173217773438 2 579.818941 1157.62333 NaN NaN NaN NaN NaN NaN NaN 43.305 1 46.944 46.444 47.444 3.6385 0 0 0 0.53105 1 8042 8042 1.8442 0.36234 1 26266 11349 16392 16401 30634 30634 0.050823087483195195 LVFQVPLEY 9 Unmodified _LVFQVPLEY_ 0 0 0 L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|326|2|anti-sense;L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|367|3|anti-sense;L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|370|3|anti-sense;L1P3_dup1479|chr7:26764850-26770911:-|5.103617207130673|0.0628493276076669|6.34|151.0|297|2|anti-sense L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|326|2|anti-sense L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|326|2|anti-sense MSMS UPN47_class_I_Rep_2 3 554.305908203125 2 554.307875 1106.6012 NaN NaN NaN NaN NaN NaN NaN 55.967 1 59.277 58.777 59.777 3.3102 0 0 0 0.31276 1 12775 12775 10.074 0 1 26267 13519 16393 16402 30635 30635 0.0521608427989122 LVFRCFQL 8 Unmodified _LVFRCFQL_ 0 0 0 REV__L1M4c_dup3139|chr19:27786805-27787844:+|1.143552475038651|0.1103935160765923|3.37|151.0|61|3|anti-sense REV__L1M4c_dup3139|chr19:27786805-27787844:+|1.143552475038651|0.1103935160765923|3.37|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_2 3 513.2852172851562 2 513.28368 1024.55281 NaN NaN NaN NaN NaN NaN NaN 57.565 1 60.856 60.356 61.356 3.2912 0 0 0 0.39624 1 13264 13264 9.3474 0.75416 1 + 26268 24595 16394 16403 30636 30636 0.041513121590014634 LVFRGLLEV 9 Unmodified _LVFRGLLEV_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-SECPEP UPN46_class_I_Rep_3 1 523.3036499023438 2 523.32386 1044.63317 0.32465 0.0001699 -2.4532 -0.0012838 -2.1286 -0.0011139 523.3225383590419 83.965 0.13853 83.965 83.889 84.028 0 21 15 2 0 0 0 0.091581 1 19966 19966 17.113 0.96379 1 196720 + 26269 20041 16395 16404 30637 30637 0.11263496753713298 LVFRSNTK 8 Unmodified _LVFRSNTK_ 0 0 0 ENST00000460982.1_1_13:36424859-36429698:-|nuORF ENST00000460982.1_1_13:36424859-36429698:-|nuORF ENST00000460982.1_1_13:36424859-36429698:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.7812805175781 2 482.782359 963.550165 -0.19197 -9.268E-05 -0.68785 -0.00033208 -0.87982 -0.00042476 482.7819460456776 16.424 0.48425 19.81 19.532 20.016 3.3864 105 60 2 0 0 0 0.82752 1 1026 1026 0.79363 0 1 44757 26270 6856 16396 16405 30638 30638 0.06693180025695256 LVGAHKRY 8 Unmodified _LVGAHKRY_ 0 0 0 Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|41|1|sense;Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|45|1|sense Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|41|1|sense Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|41|1|sense MSMS UPN47_class_I_Rep_2 3 472.2760009765625 2 472.277244 942.539935 NaN NaN NaN NaN NaN NaN NaN 88.667 1 92.119 91.619 92.619 3.4525 0 0 0 0.40738 1 22042 22042 0.79363 0 1 26271 7988 16397 16406 30639 30639 0.06636617091123753 LVGDLWNLQ 9 Unmodified _LVGDLWNLQ_ 0 0 0 nc|ENSG00000265763|Q96MN9-2|ZNF488;ENSG00000265763|ENST00000585316|ZNF488 nc|ENSG00000265763|Q96MN9-2|ZNF488 nc|ENSG00000265763|Q96MN9-2|ZNF488 MULTI-MSMS UPN47_class_I_Rep_2 3 529.2694091796875 2 529.287474 1056.5604 0.21522 0.00011392 0.53163 0.00028138 0.74685 0.0003953 529.287705001398 61.942 0.72799 65.201 64.885 65.613 3.2594 90 51 3 0 0 0 0.20276 1 14542 14542 20.454 3.5113 1 141750 26272 5797 16398 16407 30640 30640 0.034377429602727716 LVGTVVWICL 10 Unmodified _LVGTVVWICL_ 0 0 0 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-MSMS UPN48_class_I_Rep_1 5 551.821044921875 2 551.820095 1101.62564 0.49224 0.00027163 0.9612 0.00053041 1.4534 0.00080204 551.8207523555461 107.86 0.13686 111.49 111.42 111.56 3.6313 21 9 3 0 0 0 0.54078 1 26032 26032 6.7232 0 1 5954500 + 26273 20082 16399 16408 30641 30641 0.07889021161759047 LVGTVVWICL 10 Unmodified _LVGTVVWICL_ 0 0 0 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-MATCH UPN47_class_I_Rep_1 2 2 551.820095 1101.62564 0.53251 0.00029385 0.52541 0.00028993 1.0579 0.00058378 551.8205451809278 107.85 0.10262 111.52 111.48 111.58 3.6724 0.048238 -0.00051831 NaN 6.7232 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 2377600 + 26274 20082 16399 16408 0.07889021161759047 LVGTVVWICL 10 Unmodified _LVGTVVWICL_ 0 0 0 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-MATCH UPN47_class_I_Rep_3 4 2 551.820095 1101.62564 0.49932 0.00027554 1.062 0.00058604 1.5613 0.00086158 551.8207748218618 107.84 0.090622 111.38 111.35 111.44 3.5382 -0.091727 7.3911E-05 NaN 6.7232 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4845800 + 26275 20082 16399 16408 0.07889021161759047 LVGTVVWICL 10 Unmodified _LVGTVVWICL_ 0 0 0 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-MATCH UPN48_class_I_Rep_3 7 2 551.820095 1101.62564 0.39592 0.00021848 1.4599 0.00080558 1.8558 0.0010241 551.8210144189698 107.82 0.10314 111.5 111.47 111.58 3.6813 0.028259 0.00051299 NaN 6.7232 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3957400 + 26276 20082 16399 16408 0.07889021161759047 LVHKFCSLL 9 Unmodified _LVHKFCSLL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS UPN48_class_I_Rep_1 5 530.8072509765625 2 530.304613 1058.59467 0.39294 0.00020838 1.4537 0.00077089 1.8466 0.00097927 530.305024612925 29.182 0.5306 32.732 32.49 33.021 3.5499 89 55 2 0 0 0 0.49026 1 4068 4068 1.6526 0 1 138040 26277 5248 16400 16409 30642 30642 0.06771867847533031 LVHKQAPRPM 10 Unmodified _LVHKQAPRPM_ 0 0 0 L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|32|1|sense L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|32|1|sense L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|32|1|sense MSMS UPN46_class_I_Rep_3 1 588.8369140625 2 588.837143 1175.65973 NaN NaN NaN NaN NaN NaN NaN 56.916 1 56.916 56.416 57.416 0 0 0 0 0.53105 1 12442 12442 1.4819 0.28856 1 26278 13617 16401 16410 30643 30643 0.07892862373364551 LVHPCGRF 8 Unmodified _LVHPCGRF_ 0 0 0 REV__ENST00000590836.1_1_17:41132593-41133163:+|nuORF REV__ENST00000590836.1_1_17:41132593-41133163:+|nuORF MSMS UPN46_class_I_Rep_3 1 464.76702880859375 2 464.744722 927.474891 NaN NaN NaN NaN NaN NaN NaN 66.69 1 66.69 66.19 67.19 0 0 0 0 0.40738 1 15145 15145 0.79363 0 1 + 26279 21159 16402 16411 30644 30644 0.008252992936377268 LVHPSFLTYVH 11 Unmodified _LVHPSFLTYVH_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|166|3|anti-sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|166|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.23980712890625 3 438.239796 1311.69756 0.047867 2.0977E-05 -0.12213 -5.3524E-05 -0.074267 -3.2547E-05 438.2397176418129 66.069 0.89479 69.521 69.115 70.01 3.4516 144 58 3 0 0 0 0.66974 1 15227 15227 1.4551 0 1 639990 + 26280 29477 16403 16412 30645 30645 0.05417651839843529 LVHSITEL 8 Unmodified _LVHSITEL_ 0 0 0 nc|ENSG00000166069|Q8N6Q1-2|TMCO5A;ENSG00000166069|ENST00000319669|TMCO5A nc|ENSG00000166069|Q8N6Q1-2|TMCO5A nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MSMS UPN47_class_I_Rep_1 2 456.263916015625 2 456.263468 910.512382 0.054878 2.5039E-05 -0.089427 -4.0802E-05 -0.03455 -1.5764E-05 456.26333966144864 56.577 0.47753 60.034 59.636 60.113 3.4572 63 26 3 0 0 0 0.82752 1 12852 12852 5.7604 0 1 672670 26281 4214 16404 16413 30646 30646 0.05354669040207227 LVHSITEL 8 Unmodified _LVHSITEL_ 0 0 0 nc|ENSG00000166069|Q8N6Q1-2|TMCO5A;ENSG00000166069|ENST00000319669|TMCO5A nc|ENSG00000166069|Q8N6Q1-2|TMCO5A nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MSMS UPN47_class_I_Rep_1 2 456.2634582519531 2 456.263468 910.512382 0.059077 2.6955E-05 -0.21117 -9.6349E-05 -0.15209 -6.9394E-05 456.26332642960017 56.683 0.6199 60.141 60.101 60.721 3.4572 89 55 2 0 0 0 0.82752 1 13066 13066 5.7604 0 1 903040 26282 4214 16404 16413 30647 30647 0.05354669040207227 LVHSLHWII 9 Unmodified _LVHSLHWII_ 0 0 0 MER51-int_dup292|chrX:131720217-131720840:+|1.006605520487267|0.0044963537935915|7.81|149.0|22|3|sense;MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|7|1|sense;MER51-int_dup121|chr4:70922600-70923372:-|1.3807502494764656|0.006093282175697|7.82|151.0|13|2|sense MER51-int_dup292|chrX:131720217-131720840:+|1.006605520487267|0.0044963537935915|7.81|149.0|22|3|sense MER51-int_dup292|chrX:131720217-131720840:+|1.006605520487267|0.0044963537935915|7.81|149.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 559.327880859375 2 559.329476 1116.6444 NaN NaN NaN NaN NaN NaN NaN 42.757 1 46.515 46.015 47.015 3.7579 0 0 0 0.39428 1 7954 7954 2.0598 0 1 26283 16072 16405 16414 30648 30648 0.09074318847842733 LVICHKIS 8 Unmodified _LVICHKIS_ 0 0 0 REV__ENST00000524620.1_1_1:52211285-52225200:+|nuORF REV__ENST00000524620.1_1_1:52211285-52225200:+|nuORF MSMS UPN46_class_I_Rep_3 1 456.7699279785156 2 456.770406 911.526258 NaN NaN NaN NaN NaN NaN NaN 65.999 1 65.999 65.499 66.499 0 0 0 0 0.40604 1 14949 14949 2.5775 0 1 + 26284 18643 16406 16415 30649 30649 0.06695623267671635 LVIIKLTY 8 Unmodified _LVIIKLTY_ 0 0 0 REV__L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|131|3|anti-sense REV__L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|131|3|anti-sense MSMS UPN47_class_I_Rep_1 2 482.2374572753906 2 481.817879 961.621205 NaN NaN NaN NaN NaN NaN NaN 61.96 1 65.328 64.828 65.828 3.3681 0 0 0 0.40738 1 14563 14563 0.79363 0 1 + 26285 26513 16407 16416 30650 30650 0.13885880010491292 LVIITPLKLVG 11 Unmodified _LVIITPLKLVG_ 0 0 0 REV__L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|110|3|anti-sense REV__L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|110|3|anti-sense MSMS UPN46_class_I_Rep_3 1 583.3994750976562 2 583.399567 1164.78458 NaN NaN NaN NaN NaN NaN NaN 94.874 1 94.874 94.374 95.374 0 0 0 0 0.38417 1 23019 23019 0.30703 0 1 + 26286 25591 16408 16417 30651 30651 0.20878058061521187 LVIKKKAY 8 Unmodified _LVIKKKAY_ 0 0 0 REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|64|2|sense REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|64|2|sense MSMS UPN48_class_I_Rep_1 5 481.8343505859375 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 89.096 1 92.719 92.219 93.219 3.6229 0 0 0 0.40746 1 21382 21382 0.69038 0 1 + 26287 23475 16409 16418 30652 30652 0.1500870210464882 LVIMNKAAIKF 11 Unmodified _LVIMNKAAIKF_ 0 0 0 L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|48|2|anti-sense L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|48|2|anti-sense L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|48|2|anti-sense MSMS UPN46_class_I_Rep_3 1 624.38037109375 2 624.380852 1246.74715 NaN NaN NaN NaN NaN NaN NaN 64.822 1 64.822 64.322 65.322 0 0 0 0 0.38417 1 14618 14618 2.9952 1.151 1 26288 12523 16410 16419 30653 30653 0.13364643524278108 LVIRLLFFLTK 11 Unmodified _LVIRLLFFLTK_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|109|1|anti-sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|109|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 454.9670104980469 3 454.967236 1361.87988 0.039304 1.7882E-05 0.79542 0.00036189 0.83473 0.00037977 455.30199826637687 42.62 1.0677 46.128 45.512 46.58 3.5079 121 92 2 0 0 0 0.68478 1 7819 7819 0.094841 0 1 346820 + 26289 29474 16411 16420 30654 30654 0.2134141125259248 LVIRLLFFLTK 11 Unmodified _LVIRLLFFLTK_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|109|1|anti-sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|109|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 454.967236 1361.87988 0.16199 7.3702E-05 0.35716 0.00016249 0.51915 0.0002362 454.9673163751144 46.428 0.042988 46.428 46.415 46.458 0 0.031737 -0.00048978 NaN 0.094841 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 76698 + 26290 29474 16411 16420 0.2134141125259248 LVIRLLFFLTK 11 Unmodified _LVIRLLFFLTK_ 0 0 0 REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|109|1|anti-sense REV__L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|109|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 454.967236 1361.87988 0.039304 1.7882E-05 0.79542 0.00036189 0.83473 0.00037977 455.30199826637687 42.62 1.0677 46.128 45.512 46.58 3.5079 -0.2685 0.00010841 NaN 0.094841 121 92 2 NaN NaN NaN NaN 0 NaN NaN 0 346820 + 26291 29474 16411 16420 0.2134141125259248 LVIVFRGLW 9 Unmodified _LVIVFRGLW_ 0 0 0 ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|61|3|sense ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|61|3|sense ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|61|3|sense MSMS UPN48_class_I_Rep_2 6 551.8429565429688 2 551.84222 1101.66989 NaN NaN NaN NaN NaN NaN NaN 82.873 1 86.542 86.042 87.042 3.669 0 0 0 0.4007 1 19685 19685 0.52476 0 1 26292 7763 16412 16421 30655 30655 0.12311793370281521 LVIVNRVAI 9 Unmodified _LVIVNRVAI_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 498.8316650390625 2 498.831852 995.649151 -0.23569 -0.00011757 0.20054 0.00010004 -0.035147 -1.7533E-05 498.8318610367307 40.027 0.89835 43.694 43.208 44.107 3.6668 158 66 3 0 0 0 0.35081 1 7993 7993 10.824 0 1 425020 26293 9730 16413 16422 30656 30656 0.15115202990614307 LVIVNRVAI 9 Unmodified _LVIVNRVAI_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 498.831787109375 2 498.831852 995.649151 -0.16827 -8.3937E-05 0.20366 0.00010159 0.035393 1.7655E-05 498.8318651982307 40.453 0.96758 43.824 43.314 44.281 3.3712 147 66 3 0 0 0 0.35081 1 8004 8004 10.824 0 1 299970 26294 9730 16413 16422 30657 30657 0.15115202990614307 LVIVNRVAI 9 Unmodified _LVIVNRVAI_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|299|3|anti-sense MSMS UPN47_class_I_Rep_3 4 498.83233642578125 2 498.831852 995.649151 NaN NaN NaN NaN NaN NaN NaN 41.091 1 44.328 43.828 44.828 3.2372 0 0 0 0.29868 1 8301 8301 10.824 0 1 26295 9730 16413 16422 30658 30658 0.15115202990614307 LVKALALKL 9 Unmodified _LVKALALKL_ 0 0 0 L1ME3_dup8892|chr20:63759525-63760435:-|1.0540961484578473|0.3099288245854245|1.77|151.0|48|2|anti-sense L1ME3_dup8892|chr20:63759525-63760435:-|1.0540961484578473|0.3099288245854245|1.77|151.0|48|2|anti-sense L1ME3_dup8892|chr20:63759525-63760435:-|1.0540961484578473|0.3099288245854245|1.77|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_3 7 484.8257141113281 2 484.846971 967.679388 NaN NaN NaN NaN NaN NaN NaN 73.49 1 77.027 76.527 77.527 3.5373 0 0 0 0.4029 1 17198 17198 0 0 1 26296 12614 16414 16423 30659 30659 0.19425561655759793 LVKCLRLLRRY 11 Unmodified _LVKCLRLLRRY_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS UPN48_class_I_Rep_1 5 478.6369323730469 3 478.302624 1431.88604 0.20727 9.914E-05 0.12493 5.9753E-05 0.3322 0.00015889 478.3025998673249 65.356 1.4379 68.811 68.288 69.726 3.4541 158 104 2 0 0 0 0.68081 1 14848 14848 0.45452 0.046251 1 1143100 26297 5494 16415 16424 30660 30660 0.18737606212448554 LVKCLRLLRRY 11 Unmodified _LVKCLRLLRRY_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS UPN48_class_I_Rep_2 6 478.97186279296875 3 478.302624 1431.88604 0.259 0.00012388 0.32928 0.0001575 0.58828 0.00028138 478.3025752783918 65.152 1.27 68.631 68.143 69.413 3.4792 260 90 4 0 0 0 0.68081 1 14739 14739 0.45452 0.046251 1 1301100 26298 5494 16415 16424 30661 30661 0.18737606212448554 LVKCLRLLRRY 11 Unmodified _LVKCLRLLRRY_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS UPN48_class_I_Rep_3 7 478.63714599609375 3 478.302624 1431.88604 0.25063 0.00011988 0.37079 0.00017735 0.62142 0.00029723 478.3026169470558 65.013 1.1048 68.521 67.929 69.034 3.5077 208 85 4 0 0 0 0.68081 1 14648 14648 0.45452 0.046251 1 828450 26299 5494 16415 16424 30662 30662 0.18737606212448554 LVKGRWLV 8 Unmodified _LVKGRWLV_ 0 0 0 REV__ENSG00000165644|ENST00000372538|COMTD1 REV__ENSG00000165644|ENST00000372538|COMTD1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.31671142578125 2 485.813462 969.612371 0.13433 6.5257E-05 -0.83284 -0.0004046 -0.69851 -0.00033935 485.8117207131178 64.339 0.59026 67.513 67.227 67.817 3.1741 72 41 2 0 0 0 0.82752 1 15440 15440 2.8892 0 1 423860 + 26300 20128 16416 16425 30663 30663 0.12634951164682207 LVKHLFFII 9 Unmodified _LVKHLFFII_ 0 0 0 REV__L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|142|2|anti-sense REV__L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|142|2|anti-sense MSMS UPN47_class_I_Rep_3 4 565.3531494140625 2 565.360245 1128.70594 NaN NaN NaN NaN NaN NaN NaN 109.08 1 112.61 112.11 113.11 3.5353 0 0 0 0.40038 1 26779 26779 0.6015 0 1 + 26301 28463 16417 16426 30664 30664 0.14673250547139105 LVKHQLAH 8 Unmodified _LVKHQLAH_ 0 0 0 nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337 nc|ENSG00000130684|Q9Y3M9-2|ZNF337 nc|ENSG00000130684|Q9Y3M9-2|ZNF337 MULTI-SECPEP UPN47_class_I_Rep_1 2 473.3101501464844 2 473.285069 944.555585 -0.18409 -8.7126E-05 1.6564 0.00078393 1.4723 0.00069681 473.28428047272286 44.611 0.48945 48.309 48.136 48.625 3.6981 64 35 3 0 0 0 0.72333 1 9314 9314 2.5775 0 1 77144 26302 2666 16418 16427 30665 30665 0.08108903608172113 LVKIAVFFF 9 Unmodified _LVKIAVFFF_ 0 0 0 ENST00000489378.5_1_7:141438966-141445458:+|nuORF ENST00000489378.5_1_7:141438966-141445458:+|nuORF ENST00000489378.5_1_7:141438966-141445458:+|nuORF MSMS UPN47_class_I_Rep_1 2 542.3079223632812 2 542.333696 1082.65284 NaN NaN NaN NaN NaN NaN NaN 82.269 1 85.782 85.282 86.282 3.5122 0 0 0 0.39326 1 20549 20549 2.3027 0 1 26303 7057 16419 16428 30666 30666 0.11481872764466061 LVKIHYSIII 10 Unmodified _LVKIHYSIII_ 0 0 0 MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|125|3|anti-sense MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|125|3|anti-sense MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|125|3|anti-sense MSMS UPN46_class_I_Rep_3 1 599.8825073242188 2 599.881542 1197.74853 NaN NaN NaN NaN NaN NaN NaN 40.483 1 40.483 39.983 40.983 0 0 0 0 0.53105 1 7859 7859 0.40072 0 1 26304 16112 16420 16429 30667 30667 0.15756600884697036 LVKKKKRAI 9 Unmodified _LVKKKKRAI_ 0 0 0 REV__L1PB1_dup11603|chr16:53276854-53278600:+|4.318027492656149|0.1369091107252167|4.98|151.0|41|2|sense REV__L1PB1_dup11603|chr16:53276854-53278600:+|4.318027492656149|0.1369091107252167|4.98|151.0|41|2|sense MSMS UPN47_class_I_Rep_2 3 542.389892578125 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.855 1 73.131 72.631 73.631 3.2761 0 0 0 0.4007 1 16986 16986 0.52476 0 1 + 26305 30327 16421 16430 30668 30668 0.22711146561300666 LVKKLVNPF 9 Unmodified _LVKKLVNPF_ 0 0 0 REV__ENST00000534421.1_1_19:18304082-18304879:+|nuORF REV__ENST00000534421.1_1_19:18304082-18304879:+|nuORF MSMS UPN48_class_I_Rep_2 6 529.3440551757812 2 529.342052 1056.66955 NaN NaN NaN NaN NaN NaN NaN 74.323 1 77.901 77.401 78.401 3.5779 0 0 0 0.39428 1 17484 17484 2.0598 0.21551 1 + 26306 21376 16422 16431 30669 30669 0.14348373650386748 LVKKNKRH 8 Unmodified _LVKKNKRH_ 0 0 0 L1M3_dup950|chr3:14974904-14975940:-|1.1476593071100831|0.0218529791350079|5.71|151.0|39|3|sense L1M3_dup950|chr3:14974904-14975940:-|1.1476593071100831|0.0218529791350079|5.71|151.0|39|3|sense L1M3_dup950|chr3:14974904-14975940:-|1.1476593071100831|0.0218529791350079|5.71|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 511.83367919921875 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 22.039 1 22.039 21.539 22.539 0 0 0 0 0.40746 1 2557 2557 0.69038 0 1 26307 8778 16423 16432 30670 30670 0.14092256799222014 LVKKNRVN 8 Unmodified _LVKKNRVN_ 0 0 0 REV__nc|ENSG00000153956|P54289-4|CACNA2D1 REV__nc|ENSG00000153956|P54289-4|CACNA2D1 MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.595 1 75.823 75.323 76.323 3.2271 0 0 0 0.40746 1 17880 17880 0.69038 0.16561 1 + 26308 19725 16424 16433 30671 30671 0.12232861670986495 LVKKPDQARVR 11 Unmodified _LVKKPDQARVR_ 0 0 0 ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1 ENSG00000105642|ENST00000684775|KCNN1 ENSG00000105642|ENST00000684775|KCNN1 MSMS UPN48_class_I_Rep_3 7 437.267578125 3 437.273611 1308.799 NaN NaN NaN NaN NaN NaN NaN 51.447 1 55.058 54.558 55.558 3.6105 0 0 0 0.38417 1 10544 10544 2.8433 0.21205 1 26309 1749 16425 16434 30672 30672 0.15695523262365896 LVKKRVPLS 9 Unmodified _LVKKRVPLS_ 0 0 0 REV__ENSG00000189046|ENST00000429722|ALKBH2 REV__ENSG00000189046|ENST00000429722|ALKBH2 MSMS UPN46_class_I_Rep_3 1 520.3529663085938 2 520.352951 1038.69135 NaN NaN NaN NaN NaN NaN NaN 109.46 1 109.46 108.96 109.96 0 0 0 0 0.38478 1 26883 26883 4.3292 0 1 + 26310 20994 16426 16435 30673 30673 0.17355178398975113 LVKLGGHW 8 Unmodified _LVKLGGHW_ 0 0 0 REV__L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|9|3|sense REV__L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 454.8667907714844 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 119.37 1 122.93 122.43 123.43 3.566 0 0 0 0.40604 1 28372 28372 2.5775 0 1 + 26311 29064 16427 16436 30674 30674 0.06530116205181002 LVKLQLTL 8 Unmodified _LVKLQLTL_ 0 0 0 REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|69|2|sense REV__L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|69|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 464.77606201171875 2 464.315503 926.616454 -0.25743 -0.00011953 -0.27037 -0.00012554 -0.5278 -0.00024506 464.31520862929375 42.695 1.1841 46.383 45.963 47.147 3.6875 178 80 3 0 0 0 0.72333 1 8926 8926 0.6015 0 1 495190 + 26312 29296 16428 16437 30675 30675 0.1502099586773511 LVKLYRFLARR 11 Unmodified _LVKLYRFLARR_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MSMS UPN48_class_I_Rep_2 6 478.97479248046875 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 55.033 1 58.589 58.089 59.089 3.5559 0 0 0 0.38417 1 11690 11690 0.50596 0 1 26313 981 16429 16438 30676 30676 0.19872965947138255 LVKPFWPLLV 10 Unmodified _LVKPFWPLLV_ 0 0 0 REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_2 3 404.5888671875 3 404.589877 1210.7478 NaN NaN NaN NaN NaN NaN NaN 38.459 1 41.847 41.347 42.347 3.3879 0 0 0 0.53105 1 7449 7449 0.69767 0.19171 1 + 26314 17048 16430 16439 30677 30677 0.15085806235629207 LVKPFWPLLV 10 Unmodified _LVKPFWPLLV_ 0 0 0 REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_2 3 404.5887145996094 3 404.589877 1210.7478 NaN NaN NaN NaN NaN NaN NaN 38.571 1 41.959 41.459 42.459 3.3879 0 0 0 0.53105 1 7483 7483 0.69767 0.1345 1 + 26315 17048 16430 16439 30678 30678 0.15085806235629207 LVKPFWPLLV 10 Unmodified _LVKPFWPLLV_ 0 0 0 REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 404.5890808105469 3 404.589877 1210.7478 -1.0021 -0.00040542 -1.5427 -0.00062416 -2.5448 -0.0010296 404.58920750768004 38.615 0.20552 42.003 41.916 42.121 3.3879 22 15 2 0 0 0 0.84575 1 7522 7522 0.69767 0.69767 1 94925 + 26316 17048 16430 16439 30679 30679 0.15085806235629207 LVKPFWPLLV 10 Unmodified _LVKPFWPLLV_ 0 0 0 REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense REV__AluJr_dup64463|chr15:64468323-64468714:-|1.2369349588337926|0.0101199846261203|6.93|151.0|22|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 404.589877 1210.7478 -1.1752 -0.00047548 -1.3624 -0.0005512 -2.5376 -0.0010267 404.58922049666785 38.522 0.69554 41.763 41.162 41.858 3.2414 -0.11981 5.9478E-05 NaN 0.69767 65 50 2 NaN NaN NaN NaN 0 NaN NaN 0 71757 + 26317 17048 16430 16439 0.15085806235629207 LVKRKQEL 8 Unmodified _LVKRKQEL_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MSMS UPN47_class_I_Rep_1 2 507.3263244628906 2 507.326934 1012.63931 -0.28359 -0.00014387 -0.48672 -0.00024693 -0.77032 -0.0003908 507.3264652574424 14.526 0.28713 18.001 17.904 18.191 3.475 68 33 3 0 0 0 0.82752 1 583 583 24.021 2.2739 1 70082 26318 4054 16431 16440 30680 30680 0.1335001498522388 LVKRKQEL 8 Unmodified _LVKRKQEL_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MSMS UPN47_class_I_Rep_3 4 507.32611083984375 2 507.326934 1012.63931 -0.60591 -0.0003074 -0.36723 -0.00018631 -0.97315 -0.0004937 507.32657643347653 14.683 0.29278 18.053 17.929 18.222 3.3697 54 34 2 0 0 0 0.82752 1 603 603 29.082 9.8246 1 63619 26319 4054 16431 16440 30681 30681 0.1335001498522388 LVKRKQEL 8 Unmodified _LVKRKQEL_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 507.326934 1012.63931 -0.23562 -0.00011954 -0.62246 -0.00031579 -0.85808 -0.00043533 507.32651155576235 14.634 0.31374 18.021 17.908 18.222 3.3871 -0.0039517 -0.00012439 NaN 24.021 58 37 2 NaN NaN NaN NaN 0 NaN NaN 0 58838 26320 4054 16431 16440 0.1335001498522388 LVKSIFRVVF 10 Unmodified _LVKSIFRVVF_ 0 0 0 nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2 nc|ENSG00000135457|Q12800-2|TFCP2 nc|ENSG00000135457|Q12800-2|TFCP2 MSMS UPN46_class_I_Rep_3 1 403.25616455078125 3 403.256898 1206.74886 NaN NaN NaN NaN NaN NaN NaN 109.01 1 109.01 108.51 109.51 0 0 0 0 0.53105 1 26715 26715 1.7423 0 1 26321 2912 16432 16441 30682 30682 0.15376020604549012 LVKSKQHQ 8 Unmodified _LVKSKQHQ_ 0 0 0 REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|8|1|sense REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 484.28802490234375 2 484.287808 966.561064 NaN NaN NaN NaN NaN NaN NaN 35.02 1 38.692 38.192 39.192 3.6721 0 0 0 0.40659 1 5628 5628 1.8442 0 1 + 26322 25551 16433 16442 30683 30683 0.07644582399996125 LVKTPQRP 8 Unmodified _LVKTPQRP_ 0 0 0 L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|6|1|sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|6|1|sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|6|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 469.8332214355469 2 469.792727 937.5709 -0.18072 -8.4899E-05 -0.064298 -3.0207E-05 -0.24502 -0.00011511 469.79237303086455 22.807 0.089581 22.807 22.773 22.862 0 12 9 2 0 0 0 0.72333 1 2758 2758 1.8442 0 1 19077 26323 13252 16434 16443 30684 30684 0.09961770405357129 LVKTRFFITK 10 Unmodified _LVKTRFFITK_ 0 0 0 REV__L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|99|3|anti-sense REV__L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_3 7 626.8902587890625 2 626.892441 1251.77033 NaN NaN NaN NaN NaN NaN NaN 103.97 1 107.71 107.21 108.21 3.7434 0 0 0 0.53105 1 24547 24547 5.7319 0.43497 1 + 26324 27688 16435 16444 30685 30685 0.15451405633234572 LVKVHGRQS 9 Unmodified _LVKVHGRQS_ 0 0 0 ENST00000376573.8_1_10:22824795-22824885:-|nuORF ENST00000376573.8_1_10:22824795-22824885:-|nuORF ENST00000376573.8_1_10:22824795-22824885:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 512.7715454101562 2 512.306532 1022.59851 -0.27748 -0.00014215 -0.33635 -0.00017231 -0.61383 -0.00031447 512.3061803328857 14.958 0.25869 18.345 18.231 18.489 3.3864 34 27 2 0 0 0 0.1249 1 683 683 1.4819 0 1 19478 26325 6452 16436 16445 30686 30686 0.08811673665616127 LVKVHGRQS 9 Unmodified _LVKVHGRQS_ 0 0 0 ENST00000376573.8_1_10:22824795-22824885:-|nuORF ENST00000376573.8_1_10:22824795-22824885:-|nuORF ENST00000376573.8_1_10:22824795-22824885:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 512.306532 1022.59851 -0.25602 -0.00013116 -0.29534 -0.00015131 -0.55137 -0.00028247 512.3062706371177 14.845 0.17004 18.32 18.223 18.393 3.475 -0.012551 2.4516E-05 NaN 1.4819 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 24056 26326 6452 16436 16445 0.08811673665616127 LVLALRPWRF 10 Unmodified _LVLALRPWRF_ 0 0 0 ENST00000528802.1_1_11:64882996-64883265:+|nuORF ENST00000528802.1_1_11:64882996-64883265:+|nuORF ENST00000528802.1_1_11:64882996-64883265:+|nuORF MSMS UPN46_class_I_Rep_3 1 635.89111328125 2 635.892775 1269.771 NaN NaN NaN NaN NaN NaN NaN 76.241 1 76.241 75.741 76.741 0 0 0 0 0.53105 1 17772 17772 1.6526 0.32309 1 26327 7281 16437 16446 30687 30687 0.1469024507296126 LVLELSIVN 9 Unmodified _LVLELSIVN_ 0 0 0 REV__MamGypsy2-I_dup2006|chr14:67937333-67938730:-|1.0995328909396065|0.0151286694061302|6.18|150.0|25|2|sense REV__MamGypsy2-I_dup2006|chr14:67937333-67938730:-|1.0995328909396065|0.0151286694061302|6.18|150.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 500.3080139160156 2 500.307875 998.601197 NaN NaN NaN NaN NaN NaN NaN 87.809 1 91.446 90.946 91.946 3.6372 0 0 0 0.26661 1 21950 21950 12.532 1.7076 1 + 26328 31048 16438 16447 30688 30688 0.10184084279910621 LVLFKMGC 8 Unmodified _LVLFKMGC_ 0 0 0 REV__L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|33|2|anti-sense REV__L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|33|2|anti-sense MSMS UPN48_class_I_Rep_1 5 455.74957275390625 2 455.748085 909.481616 NaN NaN NaN NaN NaN NaN NaN 24.573 1 28.139 27.639 28.639 3.5667 0 0 0 0.40738 1 2732 2732 0.79363 0 1 + 26329 24667 16439 16448 30689 30689 0.023254761299995153 LVLFLLEW 8 Unmodified _LVLFLLEW_ 0 0 0 ENST00000589502.5_1_12:1909109-1910277:-|nuORF;nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4 ENST00000589502.5_1_12:1909109-1910277:-|nuORF ENST00000589502.5_1_12:1909109-1910277:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.8106689453125 2 516.810054 1031.60555 NaN NaN NaN NaN NaN NaN NaN 115.9 1 119.36 118.86 119.86 3.462 0 0 0 0.40738 1 28512 28512 0.79363 0 1 26330 3573 16440 16449 30690 30690 0.09101593493460314 LVLFLPRM 8 Unmodified _LVLFLPRM_ 0 0 0 L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|122|1|anti-sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|122|1|anti-sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|122|1|anti-sense MSMS UPN46_class_I_Rep_3 1 494.8193359375 2 494.804248 987.593944 NaN NaN NaN NaN NaN NaN NaN 23.681 1 23.681 23.181 24.181 0 0 0 0 0.40738 1 3008 3008 0.79363 0 1 26331 9551 16441 16450 30691 30691 0.09965073198497976 LVLFMFFFL 9 Unmodified _LVLFMFFFL_ 0 0 0 ENST00000295754.9_1_3:30735309-30735375:+|nuORF ENST00000295754.9_1_3:30735309-30735375:+|nuORF ENST00000295754.9_1_3:30735309-30735375:+|nuORF MSMS UPN46_class_I_Rep_3 1 589.068359375 2 588.829932 1175.64531 NaN NaN NaN NaN NaN NaN NaN 52.341 1 52.341 51.841 52.841 0 0 0 0 0.40038 1 11186 11186 0.6015 0 1 26332 6056 16442 16451 30692 30692 0.06451397172554607 LVLFSRRP 8 Unmodified _LVLFSRRP_ 0 0 0 REV__ENST00000466449.5_1_18:77690306-77703530:-|nuORF REV__ENST00000466449.5_1_18:77690306-77703530:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 493.8070068359375 2 494.308544 986.602535 0.22288 0.00011017 3.3874 0.0016744 3.6103 0.0017846 494.31046304661027 64.369 0.11069 67.624 67.573 67.684 3.2556 10 8 2 0 0 0 0.72333 1 15336 15336 0.79363 0 1 31056 + 26333 22474 16443 16452 30693 30693 0.10869763159325885 LVLHLLAAAA 10 Unmodified _LVLHLLAAAA_ 0 0 0 REV__ENST00000428545.6_1_12:6932898-6934818:+|nuORF REV__ENST00000428545.6_1_12:6932898-6934818:+|nuORF MSMS UPN47_class_I_Rep_1 2 496.3188781738281 2 496.318577 990.622602 NaN NaN NaN NaN NaN NaN NaN 62.47 1 65.838 65.338 66.338 3.3681 0 0 0 0.53105 1 14719 14719 4.3292 0.38484 1 + 26334 22280 16444 16453 30694 30694 0.1269151409925371 LVLIGPLKRR 10 Unmodified _LVLIGPLKRR_ 0 0 0 REV__ENST00000502514.5_1_5:177377366-177384631:+|nuORF REV__ENST00000502514.5_1_5:177377366-177384631:+|nuORF MSMS UPN48_class_I_Rep_2 6 582.900390625 2 582.9006 1163.78665 NaN NaN NaN NaN NaN NaN NaN 84.29 1 87.983 87.483 88.483 3.6937 0 0 0 0.53105 1 20060 20060 0.40072 0 1 + 26335 22691 16445 16454 30695 30695 0.21130531590006285 LVLILGKLILL 11 Unmodified _LVLILGKLILL_ 0 0 0 nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B MSMS UPN48_class_I_Rep_1 5 604.4423828125 2 604.441235 1206.86792 NaN NaN NaN NaN NaN NaN NaN 82.795 1 86.382 85.882 86.882 3.5871 0 0 0 0.38417 1 19782 19782 0 0 1 26336 904 16446 16455 30696 30696 0.2727579450943267 LVLLAPPPAV 10 Unmodified _LVLLAPPPAV_ 0 0 0 ENST00000262158.6_1_18:46476255-46476423:-|nuORF ENST00000262158.6_1_18:46476255-46476423:-|nuORF ENST00000262158.6_1_18:46476255-46476423:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 495.3233947753906 2 495.323328 988.632104 0.17782 8.808E-05 -0.043145 -2.1371E-05 0.13468 6.671E-05 495.3232210244114 58.884 1.0327 62.301 61.945 62.978 3.4171 168 70 3 0 0 0 0.49259 1 13547 13547 12.532 0.89125 1 777230 26337 5964 16447 16456 30697 30697 0.13733282384794165 LVLLKLERSV 10 Unmodified _LVLLKLERSV_ 0 0 0 ENSG00000173531|ENST00000449682|MST1;ENST00000492329.5_1_3:49721463-49723185:-|nuORF;nc|ENSG00000186715|Q2TV78-2|MST1L;nc|ENSG00000173531|P26927|MST1;nc|ENSG00000186715|Q2TV78|MST1L ENSG00000173531|ENST00000449682|MST1 ENSG00000173531|ENST00000449682|MST1 MSMS UPN48_class_I_Rep_3 7 585.3846435546875 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 111.04 1 114.7 114.2 115.2 3.6654 0 0 0 0.53105 1 26343 26343 0.40072 0 1 26338 4631 16448 16457 30698 30698 0.1767169939635096 LVLLLDDATL 10 Unmodified _LVLLLDDATL_ 0 0 0 REV__ENST00000489173.1_1_3:52324715-52325174:+|nuORF REV__ENST00000489173.1_1_3:52324715-52325174:+|nuORF MSMS UPN47_class_I_Rep_2 3 543.3239135742188 2 543.326265 1084.63798 NaN NaN NaN NaN NaN NaN NaN 34.536 1 37.961 37.461 38.461 3.4253 0 0 0 0.53105 1 6259 6259 1.4819 0 1 + 26339 20264 16449 16458 30699 30699 0.09904336105796574 LVLMHWGP 8 Unmodified _LVLMHWGP_ 0 0 0 REV__L1MA4A_dup4075|chr10:21704359-21706198:-|4.05211430252408|0.0886416015922798|5.51|151.0|80|2|anti-sense REV__L1MA4A_dup4075|chr10:21704359-21706198:-|4.05211430252408|0.0886416015922798|5.51|151.0|80|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.7577209472656 2 476.757298 951.500044 0.2577 0.00012286 0.64075 0.00030548 0.89845 0.00042834 476.7575032802007 93.883 0.056709 93.883 93.84 93.896 0 7 4 2 0 0 0 0.82752 1 22764 22764 0.79363 0 1 83759 + 26340 25299 16450 16459 30700 30700 0.022353540962058105 LVLRRMLLN 9 Unmodified _LVLRRMLLN_ 0 0 0 REV__MER21C_dup2376|chr7:76586119-76586634:+|1.1894265863130384|0.116092358559014|3.36|151.0|23|1|anti-sense REV__MER21C_dup2376|chr7:76586119-76586634:+|1.1894265863130384|0.116092358559014|3.36|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_3 4 564.2745971679688 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 113.42 1 116.91 116.41 117.41 3.4963 0 0 0 0.4007 1 27820 27820 0.52476 0 1 + 26341 31225 16451 16460 30701 30701 0.14258623412888483 LVLTSHAAP 9 Unmodified _LVLTSHAAP_ 0 0 0 ENST00000291295.13_1_19:47113173-47113251:+|nuORF ENST00000291295.13_1_19:47113173-47113251:+|nuORF ENST00000291295.13_1_19:47113173-47113251:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 454.763916015625 2 454.763635 907.512717 -0.34643 -0.00015754 0.42501 0.00019328 0.078584 3.5737E-05 454.7637611743721 44.952 0.69456 48.307 48.04 48.734 3.3556 69 40 2 0 0 0 0.33654 1 9378 9378 11.64 0 1 102690 26342 6044 16452 16461 30702 30702 0.05526088760075254 LVLTSHAAP 9 Unmodified _LVLTSHAAP_ 0 0 0 ENST00000291295.13_1_19:47113173-47113251:+|nuORF ENST00000291295.13_1_19:47113173-47113251:+|nuORF ENST00000291295.13_1_19:47113173-47113251:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 454.7634582519531 2 454.763635 907.512717 -0.40409 -0.00018376 0.37446 0.00017029 -0.029629 -1.3474E-05 454.7636972901015 45.085 1.1672 48.329 48.05 49.217 3.2441 112 75 2 0 0 0 0.41259 1 9593 9593 7.2892 0 1 143870 26343 6044 16452 16461 30703 30703 0.05526088760075254 LVLVIARVRR 10 Unmodified _LVLVIARVRR_ 0 0 0 ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR MSMS UPN46_class_I_Rep_3 1 597.9088134765625 2 597.911499 1193.80845 NaN NaN NaN NaN NaN NaN NaN 67.189 1 67.189 66.689 67.689 0 0 0 0 0.53105 1 15280 15280 0.40072 0 1 26344 2309 16453 16462 30704 30704 0.2192933633859866 LVLVPKQTY 9 Unmodified _LVLVPKQTY_ 0 0 0 L1PA8A_dup2184|chr15:34928233-34929638:-|1.527971827168138|0.303124947533451|2.33|151.0|2|1|sense;L1PA5_dup10137|chr16:21869734-21871289:+|27.212623542674788|0.4132713333879793|6.04|151.0|2|1|sense;L1PA5_dup10136|chr16:21437466-21439021:+|8.815972797506303|0.0534395278733178|7.37|151.0|2|1|sense L1PA8A_dup2184|chr15:34928233-34929638:-|1.527971827168138|0.303124947533451|2.33|151.0|2|1|sense L1PA8A_dup2184|chr15:34928233-34929638:-|1.527971827168138|0.303124947533451|2.33|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 530.8215942382812 2 530.823692 1059.63283 NaN NaN NaN NaN NaN NaN NaN 87.314 1 87.314 86.814 87.814 0 0 0 0 0.40038 1 20914 20914 0.6015 0.14316 1 26345 14414 16454 16463 30705 30705 0.10540077033874695 LVLYPFFP 8 Unmodified _LVLYPFFP_ 0 0 0 REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|335|3|anti-sense REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|335|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 498.2848815917969 2 498.283672 994.552791 -0.16214 -8.0793E-05 1.567 0.00078079 1.4048 0.0007 498.2841374377322 31.087 0.22225 34.559 34.413 34.635 3.472 20 14 2 0 0 0 0.82752 1 5228 5228 2.8892 0.58649 1 33912 + 26346 29832 16455 16464 30706 30706 0.05529635430661983 LVLYPFFP 8 Unmodified _LVLYPFFP_ 0 0 0 REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|335|3|anti-sense REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|335|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 498.284423828125 2 498.283672 994.552791 -0.38227 -0.00019048 1.6829 0.00083855 1.3006 0.00064807 498.2842487452592 31.459 0.39412 34.758 34.48 34.874 3.2991 46 32 2 0 0 0 0.82752 1 5398 5398 2.8892 0 1 42192 + 26347 29832 16455 16464 30707 30707 0.05529635430661983 LVLYPFFP 8 Unmodified _LVLYPFFP_ 0 0 0 REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|335|3|anti-sense REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|335|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 498.283672 994.552791 -0.16214 -8.0793E-05 1.567 0.00078079 1.4048 0.0007 498.2841374377322 31.087 0.22225 34.559 34.413 34.635 3.472 -0.099434 -9.1195E-05 NaN 2.8892 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 33912 + 26348 29832 16455 16464 0.05529635430661983 LVMRNKVETR 10 Unmodified _LVMRNKVETR_ 0 0 0 REV__MER47A_dup2093|chr15:68091622-68091966:-|1.043600077797191|0.0201668720072053|5.69|151.0|26|2|anti-sense REV__MER47A_dup2093|chr15:68091622-68091966:-|1.043600077797191|0.0201668720072053|5.69|151.0|26|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 415.871826171875 3 415.908052 1244.70233 0.043159 1.795E-05 -1.5688 -0.00065248 -1.5257 -0.00063453 416.24280935312095 46.985 0.057724 46.985 46.932 46.99 0 5 4 2 0 0 0 0.84575 1 9665 9665 0.56317 0 1 25544 + 26349 31337 16456 16465 30708 30708 0.0897621271094522 LVMWKCKS 8 Unmodified _LVMWKCKS_ 0 0 0 THE1A_dup875|chr3:130863592-130863944:+|1.1271063041970524|0.0123777353663324|6.51|148.0|5|1|sense THE1A_dup875|chr3:130863592-130863944:+|1.1271063041970524|0.0123777353663324|6.51|148.0|5|1|sense THE1A_dup875|chr3:130863592-130863944:+|1.1271063041970524|0.0123777353663324|6.51|148.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 497.7651062011719 2 497.764266 993.513979 NaN NaN NaN NaN NaN NaN NaN 93.316 1 93.316 92.816 93.816 0 0 0 0 0.40738 1 22613 22613 0.79363 0 1 26350 32864 16457 16466 30709 30709 0.016962635329832665 LVNDKLKLY 9 Unmodified _LVNDKLKLY_ 0 0 0 REV__L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|80|3|sense REV__L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|80|3|sense MSMS UPN47_class_I_Rep_1 2 553.3329467773438 2 553.334424 1104.6543 NaN NaN NaN NaN NaN NaN NaN 88.001 1 91.657 91.157 92.157 3.6563 0 0 0 0.39598 1 22004 22004 1.6526 0.32309 1 + 26351 28403 16458 16467 30710 30710 0.10615462062582992 LVNDQLLGF 9 Unmodified _LVNDQLLGF_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN48_class_I_Rep_1 5 509.7807312011719 2 509.782025 1017.5495 0.25955 0.00013232 -0.35245 -0.00017967 -0.092898 -4.7358E-05 509.7817998751271 76.208 0.42923 79.708 79.455 79.885 3.4996 85 49 2 0 0 0 0.090251 3 18053 18053;18066;18105 36.127 0 1 97380 26352 2368 16459 16468 30711;30712;30713 30711 0.04142340586008686 LVNDQLLGF 9 Unmodified _LVNDQLLGF_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN48_class_I_Rep_2 6 509.78228759765625 2 509.782025 1017.5495 0.31134 0.00015871 -0.45388 -0.00023138 -0.14254 -7.2666E-05 509.78175295815305 76.059 0.45921 79.661 79.444 79.903 3.6011 76 59 2 0 0 0 0.043452 2 17947 17915;17947 51.63 15.503 1 150840 26353 2368 16459 16468 30714;30715 30715 0.04142340586008686 LVNDQLLGF 9 Unmodified _LVNDQLLGF_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN48_class_I_Rep_3 7 509.78131103515625 2 509.782025 1017.5495 0.32335 0.00016484 -0.39922 -0.00020351 -0.07587 -3.8677E-05 509.78178911133443 76.064 0.45781 79.647 79.417 79.875 3.5831 79 50 2 0 0 0 0.066633 3 17924 17853;17890;17924 41.84 5.7126 1 134180 26354 2368 16459 16468 30716;30717;30718 30718 0.04142340586008686 LVNISRIGF 9 Unmodified _LVNISRIGF_ 0 0 0 ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|16|2|sense ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|16|2|sense ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|16|2|sense MSMS UPN47_class_I_Rep_3 4 509.80377197265625 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 77.163 1 80.432 79.932 80.932 3.269 0 0 0 0.38784 1 19204 19204 3.5965 0 1 26355 7758 16460 16469 30719 30719 0.08902039576844345 LVNIVQHLQFV 11 Unmodified _LVNIVQHLQFV_ 0 0 0 REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|243|1|anti-sense REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|243|1|anti-sense MSMS UPN48_class_I_Rep_1 5 437.25750732421875 3 437.259079 1308.75541 NaN NaN NaN NaN NaN NaN NaN 90.179 1 93.804 93.304 94.304 3.6255 0 0 0 0.38417 1 21674 21674 1.2148 0.51716 1 + 26356 30080 16461 16470 30720 30720 0.11337913765260055 LVNIVQHLQFV 11 Unmodified _LVNIVQHLQFV_ 0 0 0 REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|243|1|anti-sense REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|243|1|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2575988769531 3 437.259079 1308.75541 NaN NaN NaN NaN NaN NaN NaN 90.697 1 94.323 93.823 94.823 3.626 0 0 0 0.38417 1 21797 21797 2.6312 1.039 1 + 26357 30080 16461 16470 30721 30721 0.11337913765260055 LVNKKKRVA 9 Unmodified _LVNKKKRVA_ 0 0 0 REV__nc|ENSG00000055163|Q96F07|CYFIP2 REV__nc|ENSG00000055163|Q96F07|CYFIP2 MSMS UPN47_class_I_Rep_3 4 528.355712890625 2 528.356025 1054.6975 NaN NaN NaN NaN NaN NaN NaN 31.608 1 34.907 34.407 35.407 3.2991 0 0 0 0.39518 1 5409 5409 1.8442 0 1 + 26358 17696 16462 16471 30722 30722 0.17233696630501072 LVNKYYVI 8 Unmodified _LVNKYYVI_ 0 0 0 REV__L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|112|3|anti-sense REV__L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|112|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 506.29742431640625 2 506.29731 1010.58007 -0.22944 -0.00011616 -0.013522 -6.8462E-06 -0.24296 -0.00012301 506.29719692222153 33.671 0.86243 37.111 36.7 37.562 3.4398 95 57 2 0 0 0 0.82752 1 6029 6029 12.532 0 1 103690 + 26359 27145 16463 16472 30723 30723 0.07520118971035572 LVNMKICKH 9 Unmodified _LVNMKICKH_ 0 0 0 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|2|intron;ENSG00000159023.22,EPB41,chr1,+,I19.1,29058853,29060421|94|11.56|2|intron;ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|3|intron ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron MSMS UPN46_class_I_Rep_3 1 543.3012084960938 2 543.301547 1084.58854 NaN NaN NaN NaN NaN NaN NaN 38.698 1 38.698 38.198 39.198 0 0 0 0 0.19137 1 7384 7384 16.942 2.104 1 26360 3818 16464 16473 30724 30724 0.049630263443532385 LVNPDSFGIR 10 Unmodified _LVNPDSFGIR_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MSMS UPN46_class_I_Rep_3 1 559.3021240234375 2 559.303655 1116.59276 NaN NaN NaN NaN NaN NaN NaN 54.895 1 54.895 54.395 55.395 0 0 0 0 0.53105 1 11909 11909 1.3295 0.5359 1 26361 4160 16465 16474 30725 30725 0.03912530363277256 LVNQINRIIY 10 Unmodified _LVNQINRIIY_ 0 0 0 REV__Tigger2a_dup57|chr1:67419087-67419434:+|1.3690996322755498|0.2297527822186623|2.58|151.0|9|3|sense REV__Tigger2a_dup57|chr1:67419087-67419434:+|1.3690996322755498|0.2297527822186623|2.58|151.0|9|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 415.9153137207031 3 415.915312 1244.72411 0.069306 2.8825E-05 -0.06681 -2.7787E-05 0.002496 1.0381E-06 415.91528283836374 41.764 0.4317 41.764 41.5 41.932 0 79 51 2 0 0 0 0.56296 1 8258 8258 1.7423 0.28716 1 174810 + 26362 32686 16466 16475 30726 30726 0.11153340731198114 LVNQKTKSQ 9 Unmodified _LVNQKTKSQ_ 0 0 0 REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 523.6779174804688 2 523.303655 1044.59276 0.32375 0.00016942 -0.13105 -6.8581E-05 0.19269 0.00010084 523.3034852072807 83.519 0.53275 83.519 83.349 83.882 0 139 55 3 0 0 0 0.23293 1 19917 19917 18.146 4.2403 1 1327000 + 26363 18888 16467 16476 30727 30727 0.07224530363282611 LVNQKTKSQ 9 Unmodified _LVNQKTKSQ_ 0 0 0 REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 523.3036499023438 2 523.303655 1044.59276 0.32494 0.00017004 -0.089994 -4.7094E-05 0.23495 0.00012295 523.3034756837699 83.954 0.20702 83.954 83.856 84.063 0 66 24 4 0 0 0 0.36392 1 19966 19966 10.074 10.074 1 643660 + 26364 18888 16467 16476 30728 30728 0.07224530363282611 LVNQKTKSQ 9 Unmodified _LVNQKTKSQ_ 0 0 0 REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 523.6779174804688 2 523.303655 1044.59276 0.32375 0.00016942 -0.13105 -6.8581E-05 0.19269 0.00010084 523.3034852072807 83.519 0.53275 83.519 83.349 83.882 0 139 55 3 0 0 0 0.10301 1 19917 19917 18.146 4.2403 1 1327000 + 26365 18888 16467 16476 30729 30729 0.07224530363282611 LVNQKTKSQ 9 Unmodified _LVNQKTKSQ_ 0 0 0 REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 523.303655 1044.59276 0.32494 0.00017004 -0.089994 -4.7094E-05 0.23495 0.00012295 523.3034756837699 83.954 0.20702 83.954 83.856 84.063 0 0.12179 0.00012895 NaN 10.074 66 24 4 NaN NaN NaN NaN 0 NaN NaN 0 643660 + 26366 18888 16467 16476 0.07224530363282611 LVNQKTKSQ 9 Unmodified _LVNQKTKSQ_ 0 0 0 REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 523.303655 1044.59276 0.36211 0.00018949 0.16382 8.5727E-05 0.52593 0.00027522 523.3039216886975 80.428 0.062714 83.737 83.692 83.755 3.309 0.11948 0.00031967 NaN 18.146 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 274280 + 26367 18888 16467 16476 0.07224530363282611 LVNRMYMPG 9 Unmodified _LVNRMYMPG_ 0 0 0 MER119_dup870|chr12:116080465-116080986:+|1.214473041425718|0.0061072655690061|7.64|150.0|22|1|anti-sense MER119_dup870|chr12:116080465-116080986:+|1.214473041425718|0.0061072655690061|7.64|150.0|22|1|anti-sense MER119_dup870|chr12:116080465-116080986:+|1.214473041425718|0.0061072655690061|7.64|150.0|22|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 540.3215942382812 2 540.77008 1079.52561 -0.0060005 -3.2449E-06 -0.74153 -0.000401 -0.74753 -0.00040424 540.7697894735009 25.022 0.074139 25.022 24.992 25.066 0 8 6 2 0 0 0 0.12462 1 3371 3371 0.45834 0 1 29614 26368 15778 16468 16477 30730 30730 -0.010975394436854913 LVNRPWPPL 9 Unmodified _LVNRPWPPL_ 0 0 0 REV__AluSz_dup90923|chr18:46019519-46019823:+|1.1470090199215|0.2398285387864982|2.26|151.0|15|2|anti-sense REV__AluSz_dup90923|chr18:46019519-46019823:+|1.1470090199215|0.2398285387864982|2.26|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.31982421875 2 546.321651 1090.62875 NaN NaN NaN NaN NaN NaN NaN 23.511 1 27.215 26.715 27.715 3.7042 0 0 0 0.40038 1 2918 2918 0.6015 0 1 + 26369 17214 16469 16478 30731 30731 0.08706032330769631 LVNRQARLPQ 10 Unmodified _LVNRQARLPQ_ 0 0 0 REV__LTR19-int_dup164|chr14:60096829-60097382:+|2.1732675478144428|0.0933101603046621|4.54|151.0|14|2|sense REV__LTR19-int_dup164|chr14:60096829-60097382:+|2.1732675478144428|0.0933101603046621|4.54|151.0|14|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 597.8556518554688 2 597.856921 1193.69929 0.55615 0.0003325 -0.85398 -0.00051056 -0.29783 -0.00017806 597.8561014974019 84.542 0.2281 88.291 88.105 88.333 3.7494 37 31 2 0 0 0 0.84575 1 20040 20040 0.35063 0.35063 1 200670 + 26370 30864 16470 16479 30732 30732 0.11018705648439209 LVNRYRNKA 9 Unmodified _LVNRYRNKA_ 0 0 0 REV__nc|ENSG00000080031|Q9HD43-3|PTPRH REV__nc|ENSG00000080031|Q9HD43-3|PTPRH MULTI-MSMS UPN46_class_I_Rep_3 1 567.331298828125 2 567.330539 1132.64652 0.46304 0.0002627 0.32098 0.0001821 0.78402 0.0004448 567.3306422317196 86.326 0.3382 86.326 86.031 86.369 0 58 34 2 0 0 0 0.46869 1 20629 20629 3.9444 0 1 798940 + 26371 17902 16471 16480 30733 30733 0.08550747585650242 LVNRYRNKA 9 Unmodified _LVNRYRNKA_ 0 0 0 REV__nc|ENSG00000080031|Q9HD43-3|PTPRH REV__nc|ENSG00000080031|Q9HD43-3|PTPRH MULTI-MSMS UPN48_class_I_Rep_2 6 567.33056640625 2 567.330539 1132.64652 0.48418 0.00027469 0.50504 0.00028652 0.98922 0.00056122 567.3306874299158 81.265 0.44016 84.922 84.601 85.041 3.6567 92 57 2 0 0 0 0.48846 1 19299 19299 1.8442 1.8442 1 269250 + 26372 17902 16471 16480 30734 30734 0.08550747585650242 LVNVIKLT 8 Unmodified _LVNVIKLT_ 0 0 0 REV__ENSG00000172716|ENST00000685675|SLFN11 REV__ENSG00000172716|ENST00000685675|SLFN11 MSMS UPN47_class_I_Rep_3 4 450.2990417480469 2 450.299853 898.585153 NaN NaN NaN NaN NaN NaN NaN 36.004 1 39.259 38.759 39.759 3.2547 0 0 0 0.4044 1 6737 6737 4.756 0 1 + 26373 20456 16472 16481 30735 30735 0.13180422833636385 LVNWLKSFKG 10 Unmodified _LVNWLKSFKG_ 0 0 0 nc|ENSG00000198739|Q86VH5-2|LRRTM3;ENSG00000198739|ENST00000361320|LRRTM3 nc|ENSG00000198739|Q86VH5-2|LRRTM3 nc|ENSG00000198739|Q86VH5-2|LRRTM3 MSMS UPN46_class_I_Rep_3 1 596.3486938476562 2 596.347866 1190.68118 NaN NaN NaN NaN NaN NaN NaN 63.985 1 63.985 63.485 64.485 0 0 0 0 0.53105 1 14378 14378 1.4819 0.79152 1 26374 5453 16473 16482 30736 30736 0.09346570673733368 LVNWTYMV 8 Unmodified _LVNWTYMV_ 0 0 0 REV__L1MA9_dup14645|chr17:30804241-30804719:-|1.6006793775795178|0.0377310742662191|5.41|151.0|4|1|sense REV__L1MA9_dup14645|chr17:30804241-30804719:-|1.6006793775795178|0.0377310742662191|5.41|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.260009765625 2 513.259871 1024.50519 -0.28611 -0.00014685 -0.44055 -0.00022612 -0.72666 -0.00037296 513.2595996086432 13.861 0.27822 17.248 17.145 17.423 3.3871 69 30 3 0 0 0 0.82752 1 454 454 0.79363 0 1 106570 + 26375 25619 16474 16483 30737 30737 -0.006083868318683017 LVNYRWGFG 9 Unmodified _LVNYRWGFG_ 0 0 0 L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|147|2|anti-sense L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|147|2|anti-sense L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|147|2|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2855224609375 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 60.638 1 63.803 63.303 64.303 3.1651 0 0 0 0.38639 1 14253 14253 3.9444 0.94915 1 26376 14631 16475 16484 30738 30738 0.01020582399974046 LVPDLYYYP 9 Unmodified _LVPDLYYYP_ 0 0 0 REV__ENSG00000179477|ENST00000647874|ALOX12B REV__ENSG00000179477|ENST00000647874|ALOX12B MULTI-MSMS UPN47_class_I_Rep_2 3 571.7914428710938 2 571.792058 1141.56956 0.046788 2.6753E-05 -0.4914 -0.00028098 -0.44461 -0.00025422 571.7918251596681 26.866 0.60986 30.364 30.095 30.705 3.4986 100 57 2 0 0 0 0.46434 1 3888 3888 4.3292 1.0479 1 63197 + 26377 20679 16476 16485 30739 30739 0.0044409152596927015 LVPFKLLQ 8 Unmodified _LVPFKLLQ_ 0 0 0 L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|81|2|anti-sense L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|81|2|anti-sense L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|81|2|anti-sense MSMS UPN48_class_I_Rep_1 5 479.3085021972656 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 54.889 1 58.397 57.897 58.897 3.5082 0 0 0 0.40364 1 11665 11665 5.7604 0 1 26378 15196 16477 16486 30740 30740 0.12585013213322327 LVPFKLLQ 8 Unmodified _LVPFKLLQ_ 0 0 0 L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|81|2|anti-sense L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|81|2|anti-sense L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|81|2|anti-sense MSMS UPN48_class_I_Rep_1 5 479.3206787109375 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 55.152 1 58.66 58.16 59.16 3.5082 0 0 0 0.40364 1 11744 11744 5.7604 0 1 26379 15196 16477 16486 30741 30741 0.12585013213322327 LVPIWIMF 8 Unmodified _LVPIWIMF_ 0 0 0 REV__L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|44|1|anti-sense REV__L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|44|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 509.7933654785156 2 509.793349 1017.57215 -0.22481 -0.00011461 -0.06618 -3.3738E-05 -0.29099 -0.00014835 509.79327894775906 39.296 0.32535 42.534 42.451 42.777 3.238 29 22 2 0 0 0 0.82752 1 7761 7761 2.8892 0 1 66122 + 26380 27670 16478 16487 30742 30742 0.06406268449904928 LVPMCHTI 8 Unmodified _LVPMCHTI_ 0 0 0 REV__L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|69|3|sense REV__L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|69|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2348327636719 2 457.235341 912.45613 -0.69262 -0.00031669 -0.40539 -0.00018536 -1.098 -0.00050205 457.2350616076817 36.566 0.88099 39.813 39.466 40.347 3.247 146 60 4 0 0 0 0.82752 2 6855 6855;6970 26.341 5.4701 1 495000 + 26381 25015 16479 16488 30743;30744 30743 -0.0035999839243459064 LVPMKKLWT 9 Unmodified _LVPMKKLWT_ 0 0 0 REV__ENST00000407071.6_2_1:245318369-245318450:+|nuORF REV__ENST00000407071.6_2_1:245318369-245318450:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 558.335205078125 2 558.335913 1114.65727 -0.41818 -0.00023349 -0.51773 -0.00028907 -0.93591 -0.00052255 558.335632312583 14.697 0.27132 18.066 17.965 18.236 3.3697 59 32 2 0 0 0 0.48846 1 592 592 1.8442 0 1 46599 + 26382 22173 16480 16489 30745 30745 0.10453013915707743 LVPPTPARAM 10 Unmodified _LVPPTPARAM_ 0 0 0 ENST00000565926.1_1_16:2255258-2255417:+|nuORF ENST00000565926.1_1_16:2255258-2255417:+|nuORF ENST00000565926.1_1_16:2255258-2255417:+|nuORF MSMS UPN48_class_I_Rep_2 6 526.7755737304688 2 526.799694 1051.58484 NaN NaN NaN NaN NaN NaN NaN 21.982 1 25.628 25.128 26.128 3.6459 0 0 0 0.53105 1 2170 2170 1.4819 0.68827 1 26383 7489 16481 16490 30746 30746 0.06110679842140598 LVPQLGAVRL 10 Unmodified _LVPQLGAVRL_ 0 0 0 REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4 REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4 MSMS UPN48_class_I_Rep_2 6 533.3406982421875 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 90.018 1 93.765 93.265 94.265 3.7471 0 0 0 0.53105 1 21458 21458 3.5965 0 1 + 26384 19926 16482 16491 30747 30747 0.1408658801931324 LVPRQQVYN 9 Unmodified _LVPRQQVYN_ 0 0 0 ENST00000318522.9_1_2:42552635-42552665:+|nuORF ENST00000318522.9_1_2:42552635-42552665:+|nuORF ENST00000318522.9_1_2:42552635-42552665:+|nuORF MSMS UPN48_class_I_Rep_2 6 558.8116455078125 2 558.811648 1115.60874 NaN NaN NaN NaN NaN NaN NaN 76.96 1 80.571 80.071 81.071 3.6116 0 0 0 0.39518 1 18189 18189 1.8442 0 1 26385 6143 16483 16492 30748 30748 0.05556236600182274 LVPRWILLILI 11 Unmodified _LVPRWILLILI_ 0 0 0 REV__MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|49|2|anti-sense REV__MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|49|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 450.281494140625 3 450.307481 1347.90061 0.020737 9.3382E-06 0.17461 7.8626E-05 0.19534 8.7964E-05 450.3074341690592 42.49 0.20079 45.998 45.904 46.105 3.5079 18 16 2 0 0 0 22.551 1 7886 7886 0 0 1 54085 + 26386 31343 16484 16493 30749 30749 0.24058001632283776 LVPRWILLILI 11 Unmodified _LVPRWILLILI_ 0 0 0 REV__MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|49|2|anti-sense REV__MER49_dup616|chr7:156886181-156887029:-|2.4645990638507995|0.0209781677781202|6.88|151.0|49|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 450.307481 1347.90061 0.081486 3.6694E-05 0.22764 0.00010251 0.30913 0.0001392 450.30757964115 42.572 0.10528 46.214 46.146 46.251 3.6415 0.10788 9.955E-06 NaN 0 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 47929 + 26387 31343 16484 16493 0.24058001632283776 LVPSITNITR 10 Unmodified _LVPSITNITR_ 0 0 0 ENST00000294785.9_1_1:160324037-160325488:+|nuORF ENST00000294785.9_1_1:160324037-160325488:+|nuORF ENST00000294785.9_1_1:160324037-160325488:+|nuORF MSMS UPN47_class_I_Rep_3 4 557.3362426757812 2 557.334956 1112.65536 NaN NaN NaN NaN NaN NaN NaN 90.878 1 94.279 93.779 94.779 3.401 0 0 0 0.53105 1 22758 22758 0 0 1 26388 6050 16485 16494 30750 30750 0.10353676431418535 LVPVACCFYY 10 Unmodified _LVPVACCFYY_ 0 0 0 L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|274|2|anti-sense L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|274|2|anti-sense L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|274|2|anti-sense MSMS UPN47_class_I_Rep_1 2 589.27392578125 2 589.274664 1176.53477 NaN NaN NaN NaN NaN NaN NaN 78.106 1 81.535 81.035 82.035 3.4289 0 0 0 0.53105 1 19407 19407 1.8442 0 1 26389 14776 16486 16495 30751 30751 -0.04643190878027781 LVPVRPRAW 9 Unmodified _LVPVRPRAW_ 0 0 0 REV__THE1B-int_dup2084|chr7:92862382-92863909:-|3.34743956109782|0.0081550119249957|8.68|151.0|4|1|sense REV__THE1B-int_dup2084|chr7:92862382-92863909:-|3.34743956109782|0.0081550119249957|8.68|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 547.2304077148438 2 547.335093 1092.65563 NaN NaN NaN NaN NaN NaN NaN 115.45 1 119.05 118.55 119.55 3.5943 0 0 0 0.4007 1 28567 28567 0.52476 0.17413 1 + 26390 32236 16487 16496 30752 30752 0.11301140941986887 LVQAELGKL 9 Unmodified _LVQAELGKL_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|95|3|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|95|3|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|95|3|sense MSMS UPN47_class_I_Rep_2 3 485.80059814453125 2 485.800217 969.585882 NaN NaN NaN NaN NaN NaN NaN 63.107 1 66.363 65.863 66.863 3.2558 0 0 0 0.37476 1 14950 14950 6.7232 0.36906 1 26391 8224 16488 16497 30753 30753 0.09987217482705546 LVQAKQLI 8 Unmodified _LVQAKQLI_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_1 2 456.79705810546875 2 456.797478 911.580402 -0.39853 -0.00018205 -0.33297 -0.0001521 -0.7315 -0.00033415 456.7973248008339 22.614 0.54893 26.319 26.05 26.599 3.7042 68 51 2 0 0 0 0.82752 1 2639 2639 4.756 0 1 48121 26392 3707;16717 16489 16498 30754 30754 0.12107538690884212 LVQKAKQR 8 Unmodified _LVQKAKQR_ 0 0 0 ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1 ENSG00000101945|ENST00000376687|SUV39H1 ENSG00000101945|ENST00000376687|SUV39H1 MSMS UPN47_class_I_Rep_3 4 485.811767578125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.15 1 68.329 67.829 68.829 3.1795 0 0 0 0.39408 1 15628 15628 10.183 0 1 26393 1594 16490 16499 30755 30755 0.12232861670986495 LVQQLIKD 8 Unmodified _LVQQLIKD_ 0 0 0 nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 MULTI-MSMS UPN47_class_I_Rep_1 2 478.7918701171875 2 478.792392 955.570232 -0.28937 -0.00013855 -0.14629 -7.0044E-05 -0.43566 -0.00020859 478.7922068782548 39.263 0.3157 42.929 42.778 43.094 3.6652 23 20 2 0 0 0 0.82752 1 7660 7660 4.756 0 1 39288 26394 1927 16491 16500 30756 30756 0.09066930965650499 LVQRAKTQ 8 Unmodified _LVQRAKTQ_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MSMS UPN47_class_I_Rep_2 3 472.2875671386719 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.28 1 91.727 91.227 92.227 3.4471 0 0 0 0.40604 1 21956 21956 2.5775 0 1 26395 3924 16492 16501 30757 30757 0.08748582399982752 LVRCIVCRY 9 Unmodified _LVRCIVCRY_ 0 0 0 L1PA14_dup234|chr1:247165266-247165897:+|1.5168429234425955|0.1106375987543254|3.78|151.0|26|1|anti-sense L1PA14_dup234|chr1:247165266-247165897:+|1.5168429234425955|0.1106375987543254|3.78|151.0|26|1|anti-sense L1PA14_dup234|chr1:247165266-247165897:+|1.5168429234425955|0.1106375987543254|3.78|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.8076171875 2 562.806996 1123.59944 -0.06735 -3.7905E-05 -0.74095 -0.00041701 -0.8083 -0.00045491 562.8065685720185 28.278 0.58634 32.044 31.767 32.353 3.7662 79 46 2 0 0 0 0.48846 1 4364 4364 1.8442 0.36234 1 97039 26396 13832 16493 16502 30758 30758 0.042584287186400616 LVRCRRLL 8 Unmodified _LVRCRRLL_ 0 0 0 REV__nc|ENSG00000115155|Q9HC10-3|OTOF;REV__nc|ENSG00000115155|Q9HC10-5|OTOF REV__nc|ENSG00000115155|Q9HC10-5|OTOF MSMS UPN47_class_I_Rep_1 2 514.830322265625 2 514.829121 1027.64369 NaN NaN NaN NaN NaN NaN NaN 65.653 1 69.009 68.509 69.509 3.3557 0 0 0 0.40604 1 15675 15675 2.5775 0.27475 1 + 26397 18543;31965 16494 16503 30759 30759 0.1309720092713178 LVRDVQDGY 9 Unmodified _LVRDVQDGY_ 0 0 0 REV__nc|ENSG00000006744|Q9BQ52-3|ELAC2 REV__nc|ENSG00000006744|Q9BQ52-3|ELAC2 MULTI-MSMS UPN48_class_I_Rep_3 7 532.7720336914062 2 532.772188 1063.52982 0.4418 0.00023538 0.24418 0.00013009 0.68598 0.00036547 532.7721879024973 47.143 0.38284 50.779 50.506 50.889 3.6363 34 24 2 0 0 0 0.33908 1 9242 9242 11.495 2.7493 1 138680 + 26398 17542 16495 16504 30760 30760 0.0005996457523451681 LVRFLLRR 8 Unmodified _LVRFLLRR_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|256|2|anti-sense;nc|ENSG00000165138|Q68DC2-3|ANKS6;ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-4|ANKS6 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|256|2|anti-sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|256|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 536.8400268554688 2 536.858735 1071.70292 0.41609 0.00022338 0.2933 0.00015746 0.70939 0.00038084 536.858791832404 55.68 0.81924 59.188 58.742 59.562 3.5082 90 56 2 0 0 0 0.82752 1 11875 11875 13.508 0 1 464990 26399 4159 16496 16505 30761 30761 0.16993420212975252 LVRGLTSFA 9 Unmodified _LVRGLTSFA_ 0 0 0 REV__ENST00000462030.5_1_3:148847510-148847732:+|nuORF REV__ENST00000462030.5_1_3:148847510-148847732:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 482.8464660644531 2 482.284734 962.554916 0.19494 9.4015E-05 0.055446 2.6741E-05 0.25038 0.00012076 482.28470781532764 54.644 0.33549 54.644 54.575 54.911 0 60 40 2 0 0 0 0.06703 1 11841 11841 24.021 0 1 322400 + 26400 20003 16497 16506 30762 30762 0.07214064168454115 LVRHCILCEN 10 Unmodified _LVRHCILCEN_ 0 0 0 REV__ENSG00000101115|ENST00000217086|SALL4 REV__ENSG00000101115|ENST00000217086|SALL4 MSMS UPN47_class_I_Rep_2 3 600.3074340820312 2 600.304818 1198.59508 NaN NaN NaN NaN NaN NaN NaN 44.026 1 47.384 46.884 47.884 3.358 0 0 0 0.53105 1 9140 9140 1.4819 0 1 + 26401 18147 16498 16507 30763 30763 0.003729195050709677 LVRIALAIRLL 11 Unmodified _LVRIALAIRLL_ 0 0 0 REV__L1PA16_dup5319|chr6:72633385-72634059:+|1.7610708115595226|0.0054427035574065|8.34|150.0|26|1|anti-sense REV__L1PA16_dup5319|chr6:72633385-72634059:+|1.7610708115595226|0.0054427035574065|8.34|150.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 625.9346313476562 2 625.937183 1249.85981 NaN NaN NaN NaN NaN NaN NaN 108.5 1 112.14 111.64 112.64 3.6355 0 0 0 0.38417 1 26667 26667 0.30703 0 1 + 26402 29387 16499 16508 30764 30764 0.24487660312615844 LVRIDRPL 8 Unmodified _LVRIDRPL_ 0 0 0 REV__L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|67|2|anti-sense REV__L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|67|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.313720703125 2 491.313826 980.613099 -0.10014 -4.9199E-05 0.03756 1.8454E-05 -0.062577 -3.0745E-05 491.31376583999923 24.107 1.0314 27.573 27.166 28.197 3.4655 201 89 3 0 0 0 0.82752 1 3261 3261 10.824 0 1 295740 + 26403 28980 16500 16509 30765 30765 0.12201745813740672 LVRKDDLH 8 Unmodified _LVRKDDLH_ 0 0 0 ENST00000583264.1_1_17:21101639-21117457:-|nuORF;ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENST00000583264.1_1_17:21101639-21117457:-|nuORF MSMS UPN47_class_I_Rep_2 3 498.28399658203125 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 31.29 1 34.759 34.259 35.259 3.4691 0 0 0 0.40659 1 5278 5278 1.8442 0 1 26404 7568 16501 16510 30766 30766 0.058482785373598745 LVRKTETTI 9 Unmodified _LVRKTETTI_ 0 0 0 L1M5_dup9818|chr3:47640100-47641204:+|1.626822142475957|0.128526820156237|3.66|151.0|20|2|sense L1M5_dup9818|chr3:47640100-47641204:+|1.626822142475957|0.128526820156237|3.66|151.0|20|2|sense L1M5_dup9818|chr3:47640100-47641204:+|1.626822142475957|0.128526820156237|3.66|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8208618164062 2 530.821681 1059.62881 0.39781 0.00021117 -0.32477 -0.0001724 0.073036 3.8769E-05 530.8214876873047 73.946 0.83899 77.182 76.623 77.462 3.2363 113 85 2 0 0 0 0.48643 1 18145 18145 2.0598 2.0598 1 157860 26405 9213 16502 16511 30767 30767 0.10137987540133508 LVRMKSTE 8 Unmodified _LVRMKSTE_ 0 0 0 REV__ENST00000481096.6_1_X:51805328-51806235:-|nuORF REV__ENST00000481096.6_1_X:51805328-51806235:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.2684631347656 2 482.268227 962.521901 0.274 0.00013214 0.2814 0.00013571 0.5554 0.00026785 482.2681424664941 58.502 0.69422 61.784 61.455 62.149 3.2818 53 38 2 0 0 0 0.82752 1 13607 13607 2.5775 0 1 94133 + 26406 19741 16503 16512 30768 30768 0.03914114054111906 LVRNARLT 8 Unmodified _LVRNARLT_ 0 0 0 REV__ENSG00000267368|ENST00000340457|UPK3BL1 REV__ENSG00000267368|ENST00000340457|UPK3BL1 MSMS UPN47_class_I_Rep_2 3 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 48.44 1 51.787 51.287 52.287 3.3465 0 0 0 0.40738 1 10473 10473 0.79363 0 1 + 26407 21412 16504 16513 30769 30769 0.10392288636876401 LVRNIGNK 8 Unmodified _LVRNIGNK_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MSMS UPN46_class_I_Rep_3 1 457.2823791503906 2 457.282526 912.550499 NaN NaN NaN NaN NaN NaN NaN 95.716 1 95.716 95.216 96.216 0 0 0 0 0.40625 1 23253 23253 2.3027 0 1 26408 3761 16505 16514 30770 30770 0.09072599745547905 LVRQPRLY 8 Unmodified _LVRQPRLY_ 0 0 0 REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10 REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10 MSMS UPN46_class_I_Rep_3 1 522.8079833984375 2 522.819276 1043.624 NaN NaN NaN NaN NaN NaN NaN 71.767 1 71.767 71.267 72.267 0 0 0 0 0.4032 1 16553 16553 6.3541 1.1234 1 + 26409 19928 16506 16515 30771 30771 0.10393148188040868 LVRRAEGAAAA 11 Unmodified _LVRRAEGAAAA_ 0 0 0 REV__nc|ENSG00000151552|P09417-2|QDPR REV__nc|ENSG00000151552|P09417-2|QDPR MULTI-SECPEP UPN47_class_I_Rep_2 3 542.3132934570312 2 542.814722 1083.61489 0.35699 0.00019378 -0.38222 -0.00020748 -0.025231 -1.3696E-05 542.8147648257101 64.493 0.16174 67.749 67.642 67.804 3.2556 15 11 2 0 0 0 22.551 1 15345 15345 1.0715 0.5467 1 60695 + 26410 19659 16507 16516 30772 30772 0.07642754831681486 LVRRRRLPPR 10 Unmodified _LVRRRRLPPR_ 0 0 0 REV__ENST00000357060.7_2_10:105990583-105992116:-|nuORF REV__ENST00000357060.7_2_10:105990583-105992116:-|nuORF MSMS UPN47_class_I_Rep_1 2 440.2921447753906 3 440.29334 1317.85819 NaN NaN NaN NaN NaN NaN NaN 55.97 1 59.449 58.949 59.949 3.4785 0 0 0 0.53105 1 12747 12747 0.15932 0 1 + 26411 21873 16508 16517 30773 30773 0.21197464067245164 LVRRTKRYN 9 Unmodified _LVRRTKRYN_ 0 0 0 REV__L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|77|2|sense REV__L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|77|2|sense MSMS UPN48_class_I_Rep_1 5 603.3675537109375 2 603.364913 1204.71527 NaN NaN NaN NaN NaN NaN NaN 73.215 1 76.696 76.196 77.196 3.4812 0 0 0 0.4007 1 17239 17239 0.52476 0 1 + 26412 30317 16509 16518 30774 30774 0.12110411885396388 LVRRTKRYN 9 Unmodified _LVRRTKRYN_ 0 0 0 REV__L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|77|2|sense REV__L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|77|2|sense MSMS UPN48_class_I_Rep_2 6 603.3076171875 2 603.364913 1204.71527 NaN NaN NaN NaN NaN NaN NaN 72.92 1 76.485 75.985 76.985 3.5645 0 0 0 0.4007 1 17097 17097 0.52476 0 1 + 26413 30317 16509 16518 30775 30775 0.12110411885396388 LVRRWAKC 8 Unmodified _LVRRWAKC_ 0 0 0 REV__ENSG00000127585|ENST00000397621|FBXL16 REV__ENSG00000127585|ENST00000397621|FBXL16 MSMS UPN47_class_I_Rep_2 3 516.3019409179688 2 516.300196 1030.58584 NaN NaN NaN NaN NaN NaN NaN 50.619 1 53.958 53.458 54.458 3.3386 0 0 0 0.40746 1 11142 11142 0.69038 0 1 + 26414 18880 16510 16519 30776 30776 0.07176939001715255 LVRTSNTRL 9 Unmodified _LVRTSNTRL_ 0 0 0 L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|153|2|anti-sense L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|153|2|anti-sense L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|153|2|anti-sense MSMS UPN47_class_I_Rep_3 4 530.31787109375 2 530.317097 1058.61964 NaN NaN NaN NaN NaN NaN NaN 77.364 1 80.633 80.133 81.133 3.269 0 0 0 0.37476 1 19262 19262 6.7232 0 1 26415 14974 16511 16520 30777 30777 0.09267638974461079 LVRVRKRHI 9 Unmodified _LVRVRKRHI_ 0 0 0 REV__L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|101|3|sense REV__L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|101|3|sense MSMS UPN48_class_I_Rep_1 5 588.892333984375 2 588.893641 1175.77273 NaN NaN NaN NaN NaN NaN NaN 106.16 1 109.78 109.28 110.28 3.6277 0 0 0 0.4007 1 25581 25581 0.52476 0.12405 1 + 26416 30662 16512 16521 30778 30778 0.1918729888159305 LVRWRVCK 8 Unmodified _LVRWRVCK_ 0 0 0 L1MA4_dup692|chr1:246092401-246093659:+|2.576191084680054|0.0176731422088223|7.19|151.0|52|1|anti-sense L1MA4_dup692|chr1:246092401-246093659:+|2.576191084680054|0.0176731422088223|7.19|151.0|52|1|anti-sense L1MA4_dup692|chr1:246092401-246093659:+|2.576191084680054|0.0176731422088223|7.19|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_3 4 530.3173217773438 2 530.315846 1058.61714 NaN NaN NaN NaN NaN NaN NaN 77.214 1 80.483 79.983 80.983 3.269 0 0 0 0.40625 1 19219 19219 2.3027 0 1 26417 9722 16513 16522 30779 30779 0.0901751203580261 LVSAGNVKR 9 Unmodified _LVSAGNVKR_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS UPN47_class_I_Rep_2 3 472.2880554199219 2 472.287808 942.561064 0.27801 0.0001313 -2.5241 -0.0011921 -2.2461 -0.0010608 472.28798733763324 107.48 0.055618 111.01 110.98 111.03 3.5345 10 7 2 0 0 0 0.35081 1 26014 26014 10.824 1.4408 1 1753200 26418 5346 16514 16523 30780 30780 0.0874858239999412 LVSAVAHEYI 10 Unmodified _LVSAVAHEYI_ 0 0 0 nc|ENSG00000167780|O75908-3|SOAT2;nc|ENSG00000167780|O75908-2|SOAT2;ENSG00000167780|ENST00000301466|SOAT2 nc|ENSG00000167780|O75908-3|SOAT2 nc|ENSG00000167780|O75908-3|SOAT2 MULTI-MSMS UPN47_class_I_Rep_2 3 551.3008422851562 2 551.300581 1100.58661 0.35697 0.0001968 -0.15249 -8.4066E-05 0.20449 0.00011273 551.3006657795199 65.729 0.54051 68.985 68.62 69.16 3.2556 41 31 2 0 0 0 0.56078 1 15667 15667 3.2813 0.97858 1 115250 26419 4331 16515 16524 30781 30781 0.04034012131751297 LVSDLRKNF 9 Unmodified _LVSDLRKNF_ 0 0 0 L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|97|1|anti-sense L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|97|1|anti-sense L1MA8_dup7988|chr12:65423260-65425856:-|1.2482765981217183|0.0246131046872208|5.66|148.0|97|1|anti-sense MSMS UPN47_class_I_Rep_1 2 546.3131713867188 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 50.406 1 54.035 53.535 54.535 3.6285 0 0 0 0.38639 1 11050 11050 3.9444 2.1002 1 26420 10064 16516 16525 30782 30782 0.07181120742939129 LVSDNHLW 8 Unmodified _LVSDNHLW_ 0 0 0 REV__nc|ENSG00000214595|Q6ZMW3-2|EML6 REV__nc|ENSG00000214595|Q6ZMW3-2|EML6 MSMS UPN47_class_I_Rep_1 2 492.2500305175781 2 492.250892 982.48723 NaN NaN NaN NaN NaN NaN NaN 39.771 1 43.437 42.937 43.937 3.6668 0 0 0 0.40643 1 7813 7813 2.0598 0 1 + 26421 21264 16517 16526 30783 30783 -0.004713857623414697 LVSFDQYLR 9 Unmodified _LVSFDQYLR_ 0 0 0 REV__CON__P50448 REV__CON__P50448 MSMS UPN47_class_I_Rep_1 2 570.8057861328125 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 68.476 1 71.84 71.34 72.34 3.3646 0 0 0 0.29868 1 16533 16533 10.824 0 1 + + 26422 17482 16518 16527 30784 30784 0.033294145060153824 LVSFLRRLGP 10 Unmodified _LVSFLRRLGP_ 0 0 0 REV__ENST00000225573.4_1_17:46020717-46020759:+|nuORF REV__ENST00000225573.4_1_17:46020717-46020759:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 579.3612670898438 2 579.361308 1156.70806 0.49201 0.00028505 0.30538 0.00017692 0.79739 0.00046197 579.3614674775068 109.08 0.17675 112.68 112.61 112.78 3.6046 28 11 3 0 0 0 0.52083 1 26855 26855 9.3831 0 1 9257400 + 26423 21487 16519 16528 30785 30785 0.13597679284930564 LVSFPHFMF 9 Unmodified _LVSFPHFMF_ 0 0 0 L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|71|2|anti-sense L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|71|2|anti-sense L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|71|2|anti-sense MSMS UPN47_class_I_Rep_2 3 562.7823486328125 2 562.783513 1123.55247 NaN NaN NaN NaN NaN NaN NaN 82.831 1 86.23 85.73 86.73 3.3984 0 0 0 0.39428 1 20647 20647 2.0598 0.40713 1 26424 15167 16520 16529 30786 30786 -0.004361075608585452 LVSGVRFV 8 Unmodified _LVSGVRFV_ 0 0 0 REV__ENST00000509082.1_1_5:240570-256462:+|nuORF REV__ENST00000509082.1_1_5:240570-256462:+|nuORF MSMS UPN48_class_I_Rep_3 7 438.7694396972656 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 108.88 1 112.55 112.05 113.05 3.6751 0 0 0 0.37214 1 25821 25821 16.942 4.4107 1 + 26425 17839 16521 16530 30787 30787 0.08014696485327022 LVSHINLIIQY 11 Unmodified _LVSHINLIIQY_ 0 0 0 L1MB3_dup2400|chr2:161189800-161190905:+|2.059908435881616|0.1061965539682202|4.28|151.0|47|1|anti-sense L1MB3_dup2400|chr2:161189800-161190905:+|2.059908435881616|0.1061965539682202|4.28|151.0|47|1|anti-sense L1MB3_dup2400|chr2:161189800-161190905:+|2.059908435881616|0.1061965539682202|4.28|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_3 4 438.2574768066406 3 438.258967 1311.75507 NaN NaN NaN NaN NaN NaN NaN 25.437 1 28.788 28.288 29.288 3.3509 0 0 0 0.38417 1 3576 3576 4.7159 1.1289 1 26426 10405 16522 16531 30788 30788 0.11166494045414765 LVSLSWVIK 9 Unmodified _LVSLSWVIK_ 0 0 0 Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense Tigger2_dup678|chr3:195535316-195536175:+|2.476023007384237|0.0258339830734699|6.58|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_1 5 522.8242797851562 2 522.826235 1043.63792 NaN NaN NaN NaN NaN NaN NaN 48.955 1 52.479 51.979 52.979 3.5239 0 0 0 0.22485 1 9841 9841 14.838 0.43289 1 26427 33326 16523 16532 30789 30789 0.11784380896438051 LVSPELKDRKE 11 Unmodified _LVSPELKDRKE_ 0 0 0 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 MULTI-MSMS UPN46_class_I_Rep_3 1 438.5855407714844 3 438.585632 1312.73507 -0.073717 -3.2331E-05 -0.14296 -6.2702E-05 -0.21668 -9.5033E-05 438.5855275308422 31.387 0.84487 31.387 31.07 31.915 0 137 62 3 0 0 0 0.4411 1 5252 5252 9.2438 1.7667 1 336050 26428 16744 16524 16533 30790 30790 0.09120698314814035 LVSPELKDRKE 11 Unmodified _LVSPELKDRKE_ 0 0 0 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 MULTI-MSMS UPN47_class_I_Rep_1 2 438.58599853515625 3 438.585632 1312.73507 -0.42301 -0.00018553 0.12665 5.5546E-05 -0.29636 -0.00012998 438.5856251302997 26.791 0.45528 30.557 30.32 30.775 3.7662 67 36 2 0 0 0 0.54468 2 3910 3857;3910 6.6235 1.9075 1 59158 26429 16744 16524 16533 30791;30792 30792 0.09120698314814035 LVSPELKDRKE 11 Unmodified _LVSPELKDRKE_ 0 0 0 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 MULTI-MSMS UPN47_class_I_Rep_2 3 438.5853271484375 3 438.585632 1312.73507 -0.71347 -0.00031292 0.32075 0.00014067 -0.39273 -0.00017224 438.5857398862117 26.912 0.61935 30.411 30.12 30.74 3.4986 95 58 2 0 0 0 0.56006 2 3930 3930;3986 6.2344 0 1 92522 26430 16744 16524 16533 30793;30794 30793 0.09120698314814035 LVSPELKDRKE 11 Unmodified _LVSPELKDRKE_ 0 0 0 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 MULTI-MSMS UPN48_class_I_Rep_2 6 438.58563232421875 3 438.585632 1312.73507 0.14613 6.4091E-05 -0.40854 -0.00017918 -0.26241 -0.00011509 438.5854563448676 27.077 0.31758 30.709 30.643 30.961 3.6311 48 34 2 0 0 0 0.62008 1 3553 3553 4.7159 0 1 76765 26431 16744 16524 16533 30795 30795 0.09120698314814035 LVSPELKDRKE 11 Unmodified _LVSPELKDRKE_ 0 0 0 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 nc|ENSG00000168779|O60902-3|SHOX2 MULTI-MATCH UPN48_class_I_Rep_3 7 3 438.585632 1312.73507 0.036617 1.606E-05 -0.040633 -1.7821E-05 -0.0040159 -1.7613E-06 438.58560680777236 27.094 0.17499 30.85 30.769 30.944 3.7555 0.25805 -0.00039019 NaN 6.6235 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 54548 26432 16744 16524 16533 0.09120698314814035 LVSPPPIGRQ 10 Unmodified _LVSPPPIGRQ_ 0 0 0 REV__ENSG00000213079|ENST00000367178|SCAF8 REV__ENSG00000213079|ENST00000367178|SCAF8 MULTI-MSMS UPN47_class_I_Rep_3 4 532.3172607421875 2 532.316566 1062.61858 0.45896 0.00024431 0.41398 0.00022037 0.87294 0.00046468 532.3165953814851 107.86 0.19974 111.39 111.33 111.53 3.5382 54 21 4 0 0 0 0.52083 1 26336 26336 9.3831 1.2276 1 40051000 + 26433 21240 16525 16534 30796 30796 0.0897742460556401 LVSPPPIGRQ 10 Unmodified _LVSPPPIGRQ_ 0 0 0 REV__ENSG00000213079|ENST00000367178|SCAF8 REV__ENSG00000213079|ENST00000367178|SCAF8 MULTI-MSMS UPN48_class_I_Rep_3 7 532.3168334960938 2 532.316566 1062.61858 0.51554 0.00027443 0.18012 9.5878E-05 0.69565 0.00037031 532.316455961365 107.82 0.19858 111.51 111.44 111.64 3.6813 49 19 4 0 0 0 0.52083 1 25451 25451 9.3831 0.63772 1 53952000 + 26434 21240 16525 16534 30797 30797 0.0897742460556401 LVSPSLSVFV 10 Unmodified _LVSPSLSVFV_ 0 0 0 REV__L1PA7_dup5496|chr6:109109552-109113218:-|1.2482383979821918|0.0396786549664122|4.98|151.0|223|3|anti-sense REV__L1PA7_dup5496|chr6:109109552-109113218:-|1.2482383979821918|0.0396786549664122|4.98|151.0|223|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.3076171875 2 524.307875 1046.6012 0.33352 0.00017487 -0.36418 -0.00019094 -0.030665 -1.6078E-05 524.3075918552754 65.637 1.0239 68.816 68.447 69.471 3.1795 139 67 3 0 0 0 0.33585 1 15698 15698 25.399 2.663 1 541020 + 26435 29719 16526 16535 30798 30798 0.07976084279880524 LVSSFTLYLLL 11 Unmodified _LVSSFTLYLLL_ 0 0 0 REV__MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|23|3|sense REV__MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|23|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3788452148438 2 634.878665 1267.74278 0.51351 0.00032601 -0.86141 -0.00054689 -0.3479 -0.00022087 634.8782161356512 104.28 0.17621 107.8 107.73 107.91 3.5205 37 28 2 0 0 0 22.551 1 25574 25574 3.2813 0 1 41384000 + 26436 31209 16527 16536 30799 30799 0.11961457582378898 LVSSFTLYLLL 11 Unmodified _LVSSFTLYLLL_ 0 0 0 REV__MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|23|3|sense REV__MER21B_dup2706|chr22:17091867-17092688:+|2.341766555090783|0.1653162839914781|3.82|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 634.8779296875 2 634.878665 1267.74278 NaN NaN NaN NaN NaN NaN NaN 104.05 1 107.67 107.17 108.17 3.6209 0 0 0 0.38417 1 25077 25077 3.2813 0 1 + 26437 31209 16527 16536 30800 30800 0.11961457582378898 LVSTAKILIFF 11 Unmodified _LVSTAKILIFF_ 0 0 0 L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense MSMS UPN47_class_I_Rep_1 2 626.386962890625 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 104.84 1 108.58 108.08 109.08 3.7395 0 0 0 0.38417 1 25746 25746 5.7319 0.43497 1 26438 9559 16528 16537 30801 30801 0.14849467681892747 LVSTAKILIFF 11 Unmodified _LVSTAKILIFF_ 0 0 0 L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3862915039062 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 105.51 1 109.25 108.75 109.75 3.7395 0 0 0 0.38417 1 25891 25891 5.7319 0.43497 1 26439 9559 16528 16537 30802 30802 0.14849467681892747 LVSTAKILIFF 11 Unmodified _LVSTAKILIFF_ 0 0 0 L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3895874023438 2 626.389199 1250.76385 0.49473 0.0003099 -1.3952 -0.00087393 -0.90046 -0.00056404 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.57992 1 24503 24503 5.7319 0 1 107270000 26440 9559 16528 16537 30803 30803 0.14849467681892747 LVSTAKILIFF 11 Unmodified _LVSTAKILIFF_ 0 0 0 L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.387451171875 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.28 1 107.02 106.52 107.52 3.7434 0 0 0 0.38417 1 24395 24395 5.7319 0 1 26441 9559 16528 16537 30804 30804 0.14849467681892747 LVSTAKILIFF 11 Unmodified _LVSTAKILIFF_ 0 0 0 L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|122|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3865356445312 2 626.389199 1250.76385 NaN NaN NaN NaN NaN NaN NaN 103.82 1 107.56 107.06 108.06 3.7434 0 0 0 0.38417 1 24515 24515 5.7319 0.43497 1 26442 9559 16528 16537 30805 30805 0.14849467681892747 LVSTKTTK 8 Unmodified _LVSTKTTK_ 0 0 0 AluJb_dup81006|chr11:128700602-128700876:+|2.4009968757820936|0.0525113037293007|5.51|151.0|9|3|sense AluJb_dup81006|chr11:128700602-128700876:+|2.4009968757820936|0.0525113037293007|5.51|151.0|9|3|sense AluJb_dup81006|chr11:128700602-128700876:+|2.4009968757820936|0.0525113037293007|5.51|151.0|9|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 438.5855407714844 2 439.271293 876.528032 -0.07245 -3.1825E-05 -1.2441 -0.00054648 -1.3165 -0.00057831 439.27027158485276 31.386 0.079571 31.386 31.373 31.452 0 6 4 2 0 0 0 0.72333 1 5252 5252 5.7604 0 1 79059 26443 71 16529 16538 30806 30806 0.08482955557258265 LVSTMIIED 9 Unmodified _LVSTMIIED_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MSMS UPN46_class_I_Rep_3 1 510.7661437988281 2 510.767726 1019.5209 NaN NaN NaN NaN NaN NaN NaN 14.823 1 14.823 14.323 15.323 0 0 0 0 0.39518 1 729 729 1.8442 1.0506 1 + 26444 20995 16530 16539 30807 30807 0.011918548945459406 LVSVHIGAPA 10 Unmodified _LVSVHIGAPA_ 0 0 0 REV__ENSG00000175711.8,B3GNTL1,chr17,-,I11.1,82961333,82965650|24|8.88|1|intron REV__ENSG00000175711.8,B3GNTL1,chr17,-,I11.1,82961333,82965650|24|8.88|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 482.2847595214844 2 482.284734 962.554916 0.13641 6.579E-05 -0.14612 -7.0471E-05 -0.0097063 -4.6812E-06 482.2846008515194 48.703 1.9219 52.049 51.562 53.484 3.3465 280 113 4 0 0 0 0.46161 1 10913 10913 14.838 0 1 2385100 + 26445 20564 16531 16540 30808 30808 0.07214064168465484 LVSVPVFVP 9 Unmodified _LVSVPVFVP_ 0 0 0 L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|138|2|anti-sense L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|138|2|anti-sense L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|138|2|anti-sense MSMS UPN47_class_I_Rep_2 3 478.7920227050781 2 478.794404 955.574254 NaN NaN NaN NaN NaN NaN NaN 39.576 1 42.955 42.455 43.455 3.3785 0 0 0 0.39428 1 7788 7788 2.0598 0.21551 1 26446 13822 16532 16541 30809 30809 0.09469020459380317 LVTFTSLVF 9 Unmodified _LVTFTSLVF_ 0 0 0 REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|31|2|sense REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|31|2|sense MSMS UPN48_class_I_Rep_2 6 513.7778930664062 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 77.632 1 81.255 80.755 81.755 3.6222 0 0 0 0.39428 1 18384 18384 2.0598 0 1 + 26447 17273 16533 16542 30810 30810 0.06796699251208338 LVTGILIEL 9 Unmodified _LVTGILIEL_ 0 0 0 REV__L1MC_dup1576|chr3:123247774-123248751:+|1.8574221835878408|0.1439450938457183|3.69|150.0|47|2|anti-sense REV__L1MC_dup1576|chr3:123247774-123248751:+|1.8574221835878408|0.1439450938457183|3.69|150.0|47|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81182861328125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 64.323 1 67.679 67.179 68.179 3.3557 0 0 0 0.26661 1 15277 15277 12.532 1.7076 1 + 26448 26456 16534 16543 30811 30811 0.12501272285282994 LVTGILIEL 9 Unmodified _LVTGILIEL_ 0 0 0 REV__L1MC_dup1576|chr3:123247774-123248751:+|1.8574221835878408|0.1439450938457183|3.69|150.0|47|2|anti-sense REV__L1MC_dup1576|chr3:123247774-123248751:+|1.8574221835878408|0.1439450938457183|3.69|150.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.812793 969.611034 0.17967 8.7288E-05 -0.070205 -3.4107E-05 0.10947 5.3182E-05 485.811701731913 64.886 0.60949 68.141 67.867 68.477 3.2556 78 49 3 0 0 0 0.3898 1 15482 15482 8.5933 0 1 597530 + 26449 26456 16534 16543 30812 30812 0.12501272285282994 LVTGILIEL 9 Unmodified _LVTGILIEL_ 0 0 0 REV__L1MC_dup1576|chr3:123247774-123248751:+|1.8574221835878408|0.1439450938457183|3.69|150.0|47|2|anti-sense REV__L1MC_dup1576|chr3:123247774-123248751:+|1.8574221835878408|0.1439450938457183|3.69|150.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.81207275390625 2 485.812793 969.611034 0.13854 6.7306E-05 1.617 0.00078556 1.7556 0.00085287 485.81169211686586 64.782 0.69727 67.961 67.75 68.447 3.1795 124 56 4 0 0 0 0.32219 3 15505 15505;15548;15563 12.532 12.532 1 294980 + 26450 26456 16534 16543 30813;30814;30815 30813 0.12501272285282994 LVTIEMCNAL 10 Unmodified _LVTIEMCNAL_ 0 0 0 nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;ENST00000571245.5_1_17:3831639-3833719:-|nuORF;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;nc|ENSG00000174437|P16615-3|ATP2A2 nc|ENSG00000074370|Q93084-5|ATP2A3 nc|ENSG00000074370|Q93084-5|ATP2A3 MULTI-MSMS UPN47_class_I_Rep_1 2 553.7835693359375 2 553.782853 1105.55115 0.42018 0.00023269 -0.40337 -0.00022338 0.016806 9.3069E-06 553.7827327001312 76.337 0.47741 79.752 79.526 80.004 3.4149 59 41 2 0 0 0 0.51021 1 18902 18902 10.8 2.644 1 100450 26451 1128 16535 16544 30816 30816 0.0025989028808908188 LVTKYNEI 8 Unmodified _LVTKYNEI_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|52|1|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|52|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.2764587402344 2 490.276575 978.538597 -0.11164 -5.4732E-05 0.43303 0.0002123 0.32139 0.00015757 490.27655590934893 39.598 0.59252 42.977 42.713 43.306 3.3785 68 38 2 0 0 0 0.82752 1 7776 7776 8.5933 0 1 91351 + 26452 29421 16536 16545 30817 30817 0.04846938211710494 LVTPAIHCFEI 11 Unmodified _LVTPAIHCFEI_ 0 0 0 Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|17|1|anti-sense Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|17|1|anti-sense Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 414.8907165527344 3 414.889886 1241.64783 NaN NaN NaN NaN NaN NaN NaN 95.309 1 95.309 94.809 95.809 0 0 0 0 0.38417 1 23134 23134 2.6312 0.19645 1 26453 8464 16537 16546 30818 30818 0.036672008395271405 LVTPAIHCFEI 11 Unmodified _LVTPAIHCFEI_ 0 0 0 Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|17|1|anti-sense Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|17|1|anti-sense Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_3 7 414.8913269042969 3 414.889886 1241.64783 NaN NaN NaN NaN NaN NaN NaN 91.082 1 94.945 94.445 95.445 3.8634 0 0 0 0.38417 1 21597 21597 2.6312 0.19645 1 26454 8464 16537 16546 30819 30819 0.036672008395271405 LVTPDAPDYP 10 Unmodified _LVTPDAPDYP_ 0 0 0 REV__HERVL-int_dup747|chr5:10717681-10720094:+|1.740618247149123|0.0308809967204922|5.82|151.0|63|3|sense REV__HERVL-int_dup747|chr5:10717681-10720094:+|1.740618247149123|0.0308809967204922|5.82|151.0|63|3|sense MSMS UPN47_class_I_Rep_3 4 544.2672729492188 2 544.268947 1086.52334 NaN NaN NaN NaN NaN NaN NaN 41.747 1 44.985 44.485 45.485 3.2372 0 0 0 0.53105 1 8497 8497 1.6526 0.85899 1 + 26455 23896 16538 16547 30820 30820 -0.016459733761621465 LVTPRQRF 8 Unmodified _LVTPRQRF_ 0 0 0 REV__THE1A-int_dup16|chr1:50932146-50933700:-|1.65395755111148|0.057903296419189|4.84|151.0|75|2|anti-sense REV__THE1A-int_dup16|chr1:50932146-50933700:-|1.65395755111148|0.057903296419189|4.84|151.0|75|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 508.302001953125 2 508.803626 1015.5927 0.14759 7.5093E-05 0.015017 7.6406E-06 0.16261 8.2734E-05 508.8036232514407 51.986 0.3196 55.584 55.385 55.705 3.5979 54 37 2 0 0 0 0.72333 1 10709 10709 4.756 4.756 1 658700 + 26456 32209 16539 16548 30821 30821 0.08552575153942144 LVTRVLAEI 9 Unmodified _LVTRVLAEI_ 0 0 0 REV__ENSG00000168036|ENST00000349496|CTNNB1 REV__ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN48_class_I_Rep_3 7 507.3216247558594 2 507.321317 1012.62808 0.23464 0.00011904 0.051628 2.6192E-05 0.28627 0.00014523 507.3212960240983 59.094 0.44167 62.617 62.398 62.84 3.5231 45 27 2 0 0 0 0.23293 1 12876 12876 18.146 0 1 139730 + 26457 20256 16540 16549 30822 30822 0.12227192891100458 LVTTDQHSLP 10 Unmodified _LVTTDQHSLP_ 0 0 0 REV__ENST00000512289.5_1_4:1323713-1332245:+|nuORF REV__ENST00000512289.5_1_4:1323713-1332245:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.8041381835938 2 555.793121 1109.57169 NaN NaN NaN NaN NaN NaN NaN 30.175 1 30.175 29.675 30.675 0 0 0 0 0.53105 1 4877 4877 1.3295 0 1 + 26458 22746 16541 16550 30823 30823 0.021285202637500333 LVTTEKRFL 9 Unmodified _LVTTEKRFL_ 0 0 0 ENST00000470633.1_1_3:186790600-186791216:+|nuORF;nc|ENSG00000073849|P15907-2|ST6GAL1;ENSG00000073849|ENST00000169298|ST6GAL1 ENST00000470633.1_1_3:186790600-186791216:+|nuORF ENST00000470633.1_1_3:186790600-186791216:+|nuORF MSMS UPN48_class_I_Rep_2 6 553.8301391601562 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.386 1 83.019 82.519 83.519 3.6331 0 0 0 0.39518 1 18858 18858 1.8442 0 1 26459 1122 16542 16551 30824 30824 0.10094577919812764 LVTTIGLSTR 10 Unmodified _LVTTIGLSTR_ 0 0 0 REV__ENSG00000163285|ENST00000295452|GABRG1 REV__ENSG00000163285|ENST00000295452|GABRG1 MULTI-MSMS UPN47_class_I_Rep_3 4 530.8230590820312 2 530.821681 1059.62881 0.39781 0.00021117 -0.32477 -0.0001724 0.073036 3.8769E-05 530.8214876873047 73.946 0.83899 77.182 76.623 77.462 3.2363 113 85 2 0 0 0 0.56354 1 18345 18345 1.3295 0.13619 1 157860 + 26460 18504 16543 16552 30825 30825 0.10137987540110771 LVTTKLYVR 9 Unmodified _LVTTKLYVR_ 0 0 0 REV__L1MC4a_dup6458|chr10:87257252-87258724:-|2.29286977115784|0.1238593709515541|4.21|151.0|117|3|anti-sense REV__L1MC4a_dup6458|chr10:87257252-87258724:-|2.29286977115784|0.1238593709515541|4.21|151.0|117|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 547.3450317382812 2 546.842416 1091.67028 0.46271 0.00025303 -0.099955 -5.466E-05 0.36275 0.00019837 547.3446169870527 93.931 0.10722 97.823 97.765 97.873 3.8914 20 14 2 0 0 0 0.48643 1 22260 22260 2.0598 0 1 177310 + 26461 27008 16544 16553 30826 30826 0.1281116829943585 LVTTRGRNRL 10 Unmodified _LVTTRGRNRL_ 0 0 0 nc|ENSG00000173210|O94929-4|ABLIM3;nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3 nc|ENSG00000173210|O94929-4|ABLIM3 nc|ENSG00000173210|O94929-4|ABLIM3 MULTI-SECPEP UPN46_class_I_Rep_3 1 592.8619995117188 2 593.36237 1184.71019 0.5587 0.00033151 0.86744 0.00051471 1.4261 0.00084622 593.3629063171264 109.96 0.22886 109.96 109.9 110.13 0 34 17 3 0 0 0 0.84575 1 27058 27058 9.3831 0 1 1339400 26462 4616 16545 16554 30827 30827 0.1252210802274476 LVTTRLQSHLK 11 Unmodified _LVTTRLQSHLK_ 0 0 0 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 MULTI-MSMS UPN46_class_I_Rep_3 1 648.3930053710938 2 648.393336 1294.77212 0.75538 0.00048978 -0.84355 -0.00054695 -0.088172 -5.717E-05 648.3926460894601 104.25 0.12957 104.25 104.14 104.27 0 26 13 3 0 0 0 0.65559 1 25454 25454 2.7352 0 1 395710 + 26463 19027 16546 16555 30828 30828 0.13652414651210165 LVTTRLQSHLK 11 Unmodified _LVTTRLQSHLK_ 0 0 0 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 MULTI-MSMS UPN47_class_I_Rep_1 2 648.3930053710938 2 648.393336 1294.77212 0.5846 0.00037905 -0.35072 -0.0002274 0.23388 0.00015165 648.3934355040695 100.19 1.1212 103.98 103.61 104.73 3.7942 280 154 3 0 0 0 0.65559 1 24773 24773 2.7352 0.23671 1 523440 + 26464 19027 16546 16555 30829 30829 0.13652414651210165 LVTTRLQSHLK 11 Unmodified _LVTTRLQSHLK_ 0 0 0 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 MULTI-MSMS UPN47_class_I_Rep_2 3 648.3933715820312 2 648.393336 1294.77212 0.63455 0.00041144 -0.50338 -0.00032639 0.13118 8.5055E-05 648.3930607165731 100.13 0.6233 103.63 103.31 103.93 3.4974 186 87 3 0 0 0 0.65559 2 24489 24489;24541 2.7352 0.23671 1 398050 + 26465 19027 16546 16555 30830;30831 30830 0.13652414651210165 LVTTRLQSHLK 11 Unmodified _LVTTRLQSHLK_ 0 0 0 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 MULTI-MSMS UPN47_class_I_Rep_3 4 648.39453125 2 648.393336 1294.77212 0.51518 0.00033404 -0.49775 -0.00032274 0.017426 1.1299E-05 648.3931005066075 100.24 0.56693 103.69 103.36 103.93 3.4483 177 78 3 0 0 0 0.65559 1 24813 24813 2.7352 0.23671 1 533470 + 26466 19027 16546 16555 30832 30832 0.13652414651210165 LVTTRLQSHLK 11 Unmodified _LVTTRLQSHLK_ 0 0 0 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 648.393336 1294.77212 0.43933 0.00028486 -0.61836 -0.00040094 -0.17903 -0.00011608 648.3928927929248 100.07 1.0423 103.68 103.26 104.3 3.6084 0.029384 2.1526E-05 NaN 2.7352 390 134 4 NaN NaN NaN NaN 0 NaN NaN 0 2752200 + 26467 19027 16546 16555 0.13652414651210165 LVTTRLQSHLK 11 Unmodified _LVTTRLQSHLK_ 0 0 0 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 REV__nc|ENSG00000132613|Q765P7-2|MTSS2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 648.393336 1294.77212 0.50197 0.00032548 -0.67954 -0.00044061 -0.17756 -0.00011513 648.392810071533 99.852 0.91677 103.61 103.21 104.13 3.7575 -0.044394 -5.7803E-05 NaN 2.7352 350 121 4 NaN NaN NaN NaN 0 NaN NaN 0 2467200 + 26468 19027 16546 16555 0.13652414651210165 LVVCDYRN 8 Unmodified _LVVCDYRN_ 0 0 0 REV__nc|ENSG00000181090|Q9H9B1-3|EHMT1 REV__nc|ENSG00000181090|Q9H9B1-3|EHMT1 MSMS UPN46_class_I_Rep_3 1 491.2444763183594 2 491.244752 980.474951 NaN NaN NaN NaN NaN NaN NaN 77.166 1 77.166 76.666 77.666 0 0 0 0 0.40738 1 18028 18028 0.79363 0 1 + 26469 20725 16547 16556 30833 30833 -0.016067454970425388 LVVCNCPFPV 10 Unmodified _LVVCNCPFPV_ 0 0 0 REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|349|3|anti-sense REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|349|3|anti-sense MSMS UPN48_class_I_Rep_1 5 545.7734375 2 545.774831 1089.53511 NaN NaN NaN NaN NaN NaN NaN 48.91 1 52.434 51.934 52.934 3.5239 0 0 0 0.53105 1 9827 9827 6.7232 0.51738 1 + 26470 30205 16548 16557 30834 30834 -0.00607771158183823 LVVCRSQRH 9 Unmodified _LVVCRSQRH_ 0 0 0 REV__chr17:78137108-78137235|48|12.17|0.2|5.91|+|1|None,TMC8|1 REV__chr17:78137108-78137235|48|12.17|0.2|5.91|+|1|None,TMC8|1 MULTI-MSMS UPN48_class_I_Rep_2 6 549.2855834960938 2 549.303467 1096.59238 0.39486 0.0002169 -0.77041 -0.00042319 -0.37555 -0.00020629 549.3030419769186 46.778 0.58083 50.527 50.237 50.818 3.7494 62 38 2 0 0 0 0.42249 1 9254 9254 6.7232 6.7232 1 148500 + 26471 17440 16549 16558 30835 30835 0.04794832162428975 LVVISEIVV 9 Unmodified _LVVISEIVV_ 0 0 0 L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense;L1PB1_dup10077|chr12:51149055-51149425:+|1.3691977366248615|0.0102677213797614|7.06|150.0|25|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.8123779296875 2 485.812793 969.611034 0.17914 8.7029E-05 -0.46617 -0.00022647 -0.28703 -0.00013944 485.8124621749424 82.495 0.65382 85.832 85.609 86.263 3.337 177 80 3 0 0 0 0.054826 3 20715 20655;20687;20715 46.921 2.5139 1 344660 26472 14992 16550 16559 30836;30837;30838 30838 0.12501272285282994 LVVISEIVV 9 Unmodified _LVVISEIVV_ 0 0 0 L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense;L1PB1_dup10077|chr12:51149055-51149425:+|1.3691977366248615|0.0102677213797614|7.06|150.0|25|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 82.775 1 86.112 85.612 86.612 3.337 0 0 0 0.1074 1 20748 20748 23.148 0 1 26473 14992 16550 16559 30839 30839 0.12501272285282994 LVVISEIVV 9 Unmodified _LVVISEIVV_ 0 0 0 L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense;L1PB1_dup10077|chr12:51149055-51149425:+|1.3691977366248615|0.0102677213797614|7.06|150.0|25|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|140|3|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8122863769531 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 83.019 1 86.356 85.856 86.856 3.337 0 0 0 0.19137 1 20815 20815 16.942 0 1 26474 14992 16550 16559 30840 30840 0.12501272285282994 LVVKYHVHC 9 Unmodified _LVVKYHVHC_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 549.2854614257812 2 549.299862 1096.58517 NaN NaN NaN NaN NaN NaN NaN 39.12 1 42.776 42.276 43.276 3.6557 0 0 0 0.39518 1 6803 6803 1.8442 1.0506 1 26475 12326 16551 16560 30841 30841 0.04074099562012634 LVVLQPFAL 9 Unmodified _LVVLQPFAL_ 0 0 0 REV__L1MDa_dup5135|chr12:79852496-79853475:-|1.837497109344825|0.0477140210471958|5.27|151.0|8|1|sense REV__L1MDa_dup5135|chr12:79852496-79853475:-|1.837497109344825|0.0477140210471958|5.27|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 500.31536865234375 2 500.315503 998.616454 0.28342 0.0001418 -0.93276 -0.00046667 -0.64934 -0.00032488 500.3149985613023 72.554 0.10614 76.119 76.048 76.154 3.5645 12 8 2 0 0 0 0.46434 1 16994 16994 4.3292 0 1 33557 + 26476 27534 16552 16561 30842 30842 0.11708995867729755 LVVLQPFAL 9 Unmodified _LVVLQPFAL_ 0 0 0 REV__L1MDa_dup5135|chr12:79852496-79853475:-|1.837497109344825|0.0477140210471958|5.27|151.0|8|1|sense REV__L1MDa_dup5135|chr12:79852496-79853475:-|1.837497109344825|0.0477140210471958|5.27|151.0|8|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 500.315503 998.616454 0.28342 0.0001418 -0.93276 -0.00046667 -0.64934 -0.00032488 500.3149985613023 72.554 0.10614 76.119 76.048 76.154 3.5645 -0.024523 0.00039783 NaN 4.3292 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 33557 + 26477 27534 16552 16561 0.11708995867729755 LVVMLILFH 9 Unmodified _LVVMLILFH_ 0 0 0 REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.8346557617188 2 542.833006 1083.65146 0.52486 0.00028491 1.9139 0.0010389 2.4388 0.0013238 542.8339037114217 63.984 0.38661 67.442 67.244 67.631 3.4578 40 25 2 0 0 0 0.2896 1 14453 14453 14.582 5.2343 1 78757 + 26478 26942 16553 16562 30843 30843 0.11297915404065861 LVVMLILFH 9 Unmodified _LVVMLILFH_ 0 0 0 REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 542.833984375 2 542.833006 1083.65146 0.52249 0.00028362 2.2176 0.0012038 2.7401 0.0014874 542.8339760105405 63.881 0.32124 67.355 67.202 67.523 3.4743 34 23 2 0 0 0 0.2896 1 14369 14369 14.582 2.9414 1 57343 + 26479 26942 16553 16562 30844 30844 0.11297915404065861 LVVMLILFH 9 Unmodified _LVVMLILFH_ 0 0 0 REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 542.8345947265625 2 542.833006 1083.65146 NaN NaN NaN NaN NaN NaN NaN 63.734 1 67.243 66.743 67.743 3.5091 0 0 0 0.22893 1 14273 14273 14.582 5.2343 1 + 26480 26942 16553 16562 30845 30845 0.11297915404065861 LVVMLILFH 9 Unmodified _LVVMLILFH_ 0 0 0 REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense REV__L1MC4_dup7513|chr5:50435185-50436436:-|2.3254628225215903|0.0122186935323648|7.57|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 542.8348999023438 2 542.833006 1083.65146 NaN NaN NaN NaN NaN NaN NaN 63.871 1 67.379 66.879 67.879 3.5083 0 0 0 0.3264 1 14314 14314 9.3474 0 1 + 26481 26942 16553 16562 30846 30846 0.11297915404065861 LVVPAPLSF 9 Unmodified _LVVPAPLSF_ 0 0 0 REV__ENSG00000176155.19,CCDC57,chr17,-,I21.1,82113766,82127691|49|7.43|1|intron REV__ENSG00000176155.19,CCDC57,chr17,-,I21.1,82113766,82127691|49|7.43|1|intron MSMS UPN47_class_I_Rep_3 4 471.79486083984375 2 471.786579 941.558604 NaN NaN NaN NaN NaN NaN NaN 58.711 1 61.876 61.376 62.376 3.1658 0 0 0 0.39428 1 13663 13663 2.0598 0 1 + 26482 20580 16554 16563 30847 30847 0.08548733942313902 LVVRFLLTY 9 Unmodified _LVVRFLLTY_ 0 0 0 REV__L1MC1_dup12275|chr19:12175496-12176188:-|1.41344836976453|0.0221858518189195|5.99|151.0|26|1|anti-sense REV__L1MC1_dup12275|chr19:12175496-12176188:-|1.41344836976453|0.0221858518189195|5.99|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 562.34814453125 2 562.347335 1122.68012 NaN NaN NaN NaN NaN NaN NaN 88.043 1 91.7 91.2 92.2 3.6563 0 0 0 0.4007 1 22016 22016 0.52476 0 1 + 26483 26517 16555 16564 30848 30848 0.12368356304864392 LVVRGKRQE 9 Unmodified _LVVRGKRQE_ 0 0 0 ENST00000376494.1_1_13:99373362-99378793:-|nuORF ENST00000376494.1_1_13:99373362-99378793:-|nuORF ENST00000376494.1_1_13:99373362-99378793:-|nuORF MSMS UPN48_class_I_Rep_3 7 542.8353271484375 2 542.832914 1083.65128 NaN NaN NaN NaN NaN NaN NaN 63.606 1 67.115 66.615 67.615 3.5091 0 0 0 0.31276 1 14234 14234 10.074 0.72649 1 26484 6449 16556 16565 30849 30849 0.11279631728439199 LVVRTSQH 8 Unmodified _LVVRTSQH_ 0 0 0 REV__L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|44|3|anti-sense REV__L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 469.8328857421875 2 470.272158 938.529764 NaN NaN NaN NaN NaN NaN NaN 34.488 1 34.488 33.988 34.988 0 0 0 0 0.40472 1 6164 6164 4.3292 0 1 + 26485 26539 16557 16566 30850 30850 0.05804009365908769 LVVSLRHK 8 Unmodified _LVVSLRHK_ 0 0 0 REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|93|3|anti-sense REV__Charlie1a_dup3540|chr10:22570625-22572140:+|2.444060738318709|0.4194497503146788|2.54|151.0|93|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3067626953125 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 54.298 1 54.298 53.798 54.798 0 0 0 0 0.4044 1 11744 11744 4.756 1.8668 1 + 26486 17320 16558 16567 30851 30851 0.12525763159328562 LVVSYTTNGY 10 Unmodified _LVVSYTTNGY_ 0 0 0 ENSG00000116574|ENST00000366691|RHOU ENSG00000116574|ENST00000366691|RHOU ENSG00000116574|ENST00000366691|RHOU MSMS UPN47_class_I_Rep_2 3 558.769775390625 2 558.782222 1115.54989 NaN NaN NaN NaN NaN NaN NaN 45.588 1 48.942 48.442 49.442 3.3534 0 0 0 0.53105 1 9621 9621 9.3831 3.1773 1 26487 2189 16559 16568 30852 30852 -0.0032628448479954386 LVVYFFRVRNP 11 Unmodified _LVVYFFRVRNP_ 0 0 0 ENST00000477559.2_1_1:236347083-236385124:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B ENST00000477559.2_1_1:236347083-236385124:+|nuORF ENST00000477559.2_1_1:236347083-236385124:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 470.6066589355469 3 470.60659 1408.79794 0.06379 3.002E-05 -0.070559 -3.3205E-05 -0.0067688 -3.1855E-06 470.6064563318209 54.59 0.82714 58.159 57.577 58.404 3.5694 85 54 2 0 0 0 0.68081 1 11422 11422 0.45452 0.45452 1 168580 26488 1176 16560 16569 30853 30853 0.10989308893499583 LVWCLPLLY 9 Unmodified _LVWCLPLLY_ 0 0 0 REV__nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 REV__nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MSMS UPN46_class_I_Rep_3 1 560.7587890625 2 560.317189 1118.61982 NaN NaN NaN NaN NaN NaN NaN 82.642 1 82.642 82.142 83.142 0 0 0 0 0.22893 1 19588 19588 14.582 0 1 + 26489 19762 16561 16570 30854 30854 0.06525922650121174 LVWEGLEV 8 Unmodified _LVWEGLEV_ 0 0 0 REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF MSMS UPN47_class_I_Rep_2 3 472.7567138671875 2 472.758018 943.501483 NaN NaN NaN NaN NaN NaN NaN 35.801 1 39.212 38.712 39.712 3.4114 0 0 0 0.39819 1 6643 6643 8.5933 3.3626 1 + 26490 23198 16562 16571 30855 30855 0.02747266665949155 LVWEPVIY 8 Unmodified _LVWEPVIY_ 0 0 0 HAL1_dup16894|chr12:82988196-82989245:+|1.0759679392637618|0.0146789418096583|6.2|145.0|43|1|anti-sense HAL1_dup16894|chr12:82988196-82989245:+|1.0759679392637618|0.0146789418096583|6.2|145.0|43|1|anti-sense HAL1_dup16894|chr12:82988196-82989245:+|1.0759679392637618|0.0146789418096583|6.2|145.0|43|1|anti-sense MSMS UPN46_class_I_Rep_3 1 509.7821350097656 2 509.784036 1017.55352 NaN NaN NaN NaN NaN NaN NaN 42.731 1 42.731 42.231 43.231 0 0 0 0 0.36148 1 8483 8483 19.439 4.6007 1 26491 7828 16563 16572 30856 30856 0.04544430079693029 LVWIHRLYLVF 11 Unmodified _LVWIHRLYLVF_ 0 0 0 L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_3 7 486.959228515625 3 486.958852 1457.85473 NaN NaN NaN NaN NaN NaN NaN 94.753 1 98.655 98.155 99.155 3.9016 0 0 0 0.38417 1 22457 22457 0.45452 0 1 26492 11500 16564 16573 30857 30857 0.1441135645002305 LVWNFFHIFTR 11 Unmodified _LVWNFFHIFTR_ 0 0 0 REV__L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|131|2|anti-sense REV__L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|131|2|anti-sense MSMS UPN46_class_I_Rep_3 1 493.9342956542969 3 493.934706 1478.78229 NaN NaN NaN NaN NaN NaN NaN 58.307 1 58.307 57.807 58.807 0 0 0 0 0.38417 1 12826 12826 0.45452 0 1 + 26493 27847 16565 16574 30858 30858 0.06205022376434499 LVWNSWPQAVL 11 Unmodified _LVWNSWPQAVL_ 0 0 0 FLAM_A_dup9947|chr12:68632846-68632969:-|2.705303546694723|0.0380702587351545|6.15|151.0|5|1|anti-sense FLAM_A_dup9947|chr12:68632846-68632969:-|2.705303546694723|0.0380702587351545|6.15|151.0|5|1|anti-sense FLAM_A_dup9947|chr12:68632846-68632969:-|2.705303546694723|0.0380702587351545|6.15|151.0|5|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 438.2397155761719 3 438.239796 1311.69756 0.13886 6.0856E-05 -0.17223 -7.548E-05 -0.033369 -1.4624E-05 438.23966791554375 65.981 0.89406 69.468 69.017 69.911 3.4866 163 63 3 0 0 0 0.54468 2 14960 14960;15135 6.6235 0 1 763110 26494 7774 16566 16575 30859;30860 30859 0.05417651839843529 LVWNSWPQAVL 11 Unmodified _LVWNSWPQAVL_ 0 0 0 FLAM_A_dup9947|chr12:68632846-68632969:-|2.705303546694723|0.0380702587351545|6.15|151.0|5|1|anti-sense FLAM_A_dup9947|chr12:68632846-68632969:-|2.705303546694723|0.0380702587351545|6.15|151.0|5|1|anti-sense FLAM_A_dup9947|chr12:68632846-68632969:-|2.705303546694723|0.0380702587351545|6.15|151.0|5|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 438.2397766113281 3 438.239796 1311.69756 0.18245 7.9956E-05 -0.2696 -0.00011815 -0.087149 -3.8192E-05 438.2396288972705 65.748 1.0364 69.256 68.901 69.937 3.5077 176 72 3 0 0 0 0.56006 1 14986 14986 6.2344 1.1868 1 497890 26495 7774 16566 16575 30861 30861 0.05417651839843529 LVWPALTL 8 Unmodified _LVWPALTL_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|6|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 456.7789611816406 2 456.781296 911.54804 NaN NaN NaN NaN NaN NaN NaN 41.258 1 44.624 44.124 45.124 3.3655 0 0 0 0.36148 1 8296 8296 19.439 3.5918 1 + 26496 23606 16567 16576 30862 30862 0.08872751287890424 LVWRKTKNI 9 Unmodified _LVWRKTKNI_ 0 0 0 REV__L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|44|2|sense REV__L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|44|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 579.3614501953125 2 579.361308 1156.70806 0.50792 0.00029427 0.73537 0.00042604 1.2433 0.00072031 579.3615986904713 108.85 0.94095 108.85 108.69 109.63 0 140 72 4 0 0 0 0.42249 1 26615 26615 6.7232 0.99131 1 44688000 + 26497 24963 16568 16577 30863 30863 0.13597679284930564 LVWRRCRR 8 Unmodified _LVWRRCRR_ 0 0 0 nc|ENSG00000006327|Q9NP84-2|TNFRSF12A;ENSG00000006327|ENST00000326577|TNFRSF12A;ENST00000575124.1_1_16:3070552-3071824:+|nuORF nc|ENSG00000006327|Q9NP84-2|TNFRSF12A nc|ENSG00000006327|Q9NP84-2|TNFRSF12A MSMS UPN46_class_I_Rep_3 1 572.8360595703125 2 572.835269 1143.65598 NaN NaN NaN NaN NaN NaN NaN 83.377 1 83.377 82.877 83.877 0 0 0 0 0.40625 1 19801 19801 2.3027 0.24298 1 26498 716 16569 16578 30864 30864 0.0899023739018503 LVYANFKM 8 Unmodified _LVYANFKM_ 0 0 0 L1M5_dup39525|chr12:62328652-62329113:+|3.729557940134104|0.0973209371915012|5.26|151.0|43|3|anti-sense L1M5_dup39525|chr12:62328652-62329113:+|3.729557940134104|0.0973209371915012|5.26|151.0|43|3|anti-sense L1M5_dup39525|chr12:62328652-62329113:+|3.729557940134104|0.0973209371915012|5.26|151.0|43|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 493.7850341796875 2 493.262413 984.510274 0.0083282 4.108E-06 2.9425 0.0014514 2.9508 0.0014555 493.2638513792118 50.007 0.0597 53.635 53.59 53.65 3.6285 5 3 2 0 0 0 0.72333 1 10920 10920 2.5775 0 1 21012 26499 9158 16570 16579 30865 30865 0.017399170307839995 LVYHRLFL 8 Unmodified _LVYHRLFL_ 0 0 0 REV__HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|30|1|sense REV__HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|30|1|sense MSMS UPN47_class_I_Rep_2 3 530.8203125 2 530.818744 1059.62294 NaN NaN NaN NaN NaN NaN NaN 73.259 1 76.556 76.056 77.056 3.2971 0 0 0 0.40581 1 18003 18003 2.8892 0 1 + 26500 23889 16571 16580 30866 30866 0.09550933819127749 LVYIHNLS 8 Unmodified _LVYIHNLS_ 0 0 0 REV__ENST00000553276.1_1_12:56094921-56105958:-|nuORF REV__ENST00000553276.1_1_12:56094921-56105958:-|nuORF MSMS UPN47_class_I_Rep_2 3 479.771484375 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 37.897 1 41.285 40.785 41.785 3.3879 0 0 0 0.40604 1 7278 7278 2.5775 0 1 + 26501 22975 16572 16581 30867 30867 0.04790375277127623 LVYKQPSL 8 Unmodified _LVYKQPSL_ 0 0 0 MLT1A0_dup20418|chr22:23222839-23223198:-|1.048308177767424|0.0063168792720328|7.37|150.0|9|2|sense MLT1A0_dup20418|chr22:23222839-23223198:-|1.048308177767424|0.0063168792720328|7.37|150.0|9|2|sense MLT1A0_dup20418|chr22:23222839-23223198:-|1.048308177767424|0.0063168792720328|7.37|150.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2820739746094 2 474.28166 946.548768 0.044723 2.1211E-05 1.512 0.00071711 1.5567 0.00073832 474.28218604051887 32.452 0.12507 32.452 32.427 32.552 0 11 8 3 0 0 0 0.82752 1 5563 5563 4.756 0 1 215980 26502 16254 16573 16582 30868 30868 0.07335545936962262 LVYRKQLTF 9 Unmodified _LVYRKQLTF_ 0 0 0 L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|49|2|anti-sense L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|49|2|anti-sense L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|49|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.347900390625 2 584.347866 1166.68118 0.33003 0.00019285 0.17836 0.00010422 0.50839 0.00029708 584.3478769381142 32.939 0.12928 32.939 32.873 33.003 0 12 8 2 0 0 0 0.48846 1 5688 5688 1.8442 0.19162 1 569920 26503 11780 16574 16583 30869 30869 0.10450570673742732 LVYRTDKY 8 Unmodified _LVYRTDKY_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MULTI-MSMS UPN47_class_I_Rep_2 3 529.269287109375 2 529.287474 1056.5604 0.21522 0.00011392 0.53163 0.00028138 0.74685 0.0003953 529.287705001398 61.942 0.72799 65.201 64.885 65.613 3.2594 90 51 3 0 0 0 0.82752 1 14577 14577 18.135 1.1927 1 141750 26504 3279 16575 16584 30870 30870 0.034377429602727716 LVYSDGNTY 9 Unmodified _LVYSDGNTY_ 0 0 0 nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30 nc|ENSG00000243238|P06310|IGKV2-30 nc|ENSG00000243238|P06310|IGKV2-30 MULTI-MSMS UPN48_class_I_Rep_2 6 516.2373046875 2 516.237647 1030.46074 0.44756 0.00023105 0.1859 9.5969E-05 0.63346 0.00032702 516.2375951856878 57.636 0.4224 61.15 60.968 61.39 3.5142 53 32 3 0 0 0 0.3898 1 12483 12483 8.5933 2.8329 1 125190 26505 16833 16576 16585 30871 30871 -0.05327119444314121 LVYSDGNTY 9 Unmodified _LVYSDGNTY_ 0 0 0 nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30 nc|ENSG00000243238|P06310|IGKV2-30 nc|ENSG00000243238|P06310|IGKV2-30 MULTI-MSMS UPN48_class_I_Rep_3 7 516.2379760742188 2 516.237647 1030.46074 0.27275 0.0001408 0.069401 3.5828E-05 0.34215 0.00017663 516.2376111551127 57.528 0.38281 61.06 60.853 61.236 3.5317 51 32 2 0 0 0 0.25207 1 12364 12364 16.942 5.302 1 128550 26506 16833 16576 16585 30872 30872 -0.05327119444314121 LVYSDGNTY 9 Unmodified _LVYSDGNTY_ 0 0 0 nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30 nc|ENSG00000243238|P06310|IGKV2-30 nc|ENSG00000243238|P06310|IGKV2-30 MULTI-SECPEP UPN48_class_I_Rep_3 7 516.298095703125 2 516.237647 1030.46074 0.27275 0.0001408 0.069401 3.5828E-05 0.34215 0.00017663 516.2376111551127 57.528 0.38281 61.06 60.853 61.236 3.5317 51 32 2 0 0 0 0.11873 1 12377 12377 8.5933 4.264 1 128550 26507 16833 16576 16585 30873 30873 -0.05327119444314121 LVYSDGNTY 9 Unmodified _LVYSDGNTY_ 0 0 0 nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30 nc|ENSG00000243238|P06310|IGKV2-30 nc|ENSG00000243238|P06310|IGKV2-30 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 516.237647 1030.46074 0.44756 0.00023105 0.1859 9.5969E-05 0.63346 0.00032702 516.2375951856878 57.636 0.4224 61.15 60.968 61.39 3.5142 0.029045 -6.3468E-05 NaN 16.942 53 32 3 NaN NaN NaN NaN 0 NaN NaN 0 125190 26508 16833 16576 16585 -0.05327119444314121 LVYVGFVF 8 Unmodified _LVYVGFVF_ 0 0 0 VSTM2A|p.S15C|1|0.07|ENSG00000170419|chr7:54542774-54542774|C/G|missense_variant;nc|ENSG00000170419|Q8TAG5|VSTM2A;ENSG00000170419|ENST00000402613|VSTM2A;nc|ENSG00000170419|Q8TAG5-2|VSTM2A VSTM2A|p.S15C|1|0.07|ENSG00000170419|chr7:54542774-54542774|C/G|missense_variant VSTM2A|p.S15C|1|0.07|ENSG00000170419|chr7:54542774-54542774|C/G|missense_variant MSMS UPN46_class_I_Rep_3 1 472.26898193359375 2 472.268022 942.521491 NaN NaN NaN NaN NaN NaN NaN 78.85 1 78.85 78.35 79.35 0 0 0 0 0.40738 1 18491 18491 0.79363 0 1 26509 4470 16577 16586 30874 30874 0.047930623965839914 LWAFFWSR 8 Unmodified _LWAFFWSR_ 0 0 0 REV__HERVL-int_dup88|chr1:97407534-97408607:+|1.1572891123823967|0.1399303995393804|3.05|151.0|54|2|anti-sense REV__HERVL-int_dup88|chr1:97407534-97408607:+|1.1572891123823967|0.1399303995393804|3.05|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_2 3 557.236328125 2 556.787444 1111.56034 NaN NaN NaN NaN NaN NaN NaN 27.904 1 31.402 30.902 31.902 3.4986 0 0 0 0.40738 1 4255 4255 0.79363 0 1 + 26510 23900 16578 16587 30875 30875 0.009017877509222672 LWALLLAL 8 Unmodified _LWALLLAL_ 0 0 0 ENSG00000196421|ENST00000636176|C20orf204 REV__ENSG00000182534|ENST00000449428|MXRA7 REV__ENSG00000182534|ENST00000449428|MXRA7 MSMS UPN47_class_I_Rep_2 3 456.7975158691406 2 456.799489 911.584425 NaN NaN NaN NaN NaN NaN NaN 23.098 1 26.543 26.043 27.043 3.4447 0 0 0 0.40738 1 2854 2854 0.79363 0 1 26511 5304 16579 16588 30876 30876 0.12509628184591293 LWAMGMEW 8 Unmodified _LWAMGMEW_ 0 0 0 REV__ENSG00000187714|ENST00000374115|SLC18A3 REV__ENSG00000187714|ENST00000374115|SLC18A3 MSMS UPN47_class_I_Rep_3 4 512.2254638671875 2 512.224974 1022.43539 NaN NaN NaN NaN NaN NaN NaN 91.126 1 94.527 94.027 95.027 3.401 0 0 0 0.40738 1 22806 22806 0.79363 0 1 + 26512 20939 16580 16589 30877 30877 -0.07492588772095132 LWAQYRAG 8 Unmodified _LWAQYRAG_ 0 0 0 REV__AluSx1_dup56288|chr9:127747522-127747839:-|1.0084737206068737|0.1282545636076841|2.98|151.0|15|1|anti-sense REV__AluSx1_dup56288|chr9:127747522-127747839:-|1.0084737206068737|0.1282545636076841|2.98|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.7541809082031 2 482.753601 963.49265 NaN NaN NaN NaN NaN NaN NaN 37.033 1 40.54 40.04 41.04 3.507 0 0 0 0.40604 1 6251 6251 2.5775 0.27475 1 + 26513 17181 16581 16590 30878 30878 0.00944337820135388 LWARRQWHD 9 Unmodified _LWARRQWHD_ 0 0 0 L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 634.3257446289062 2 634.325788 1266.63702 0.45514 0.00028871 -0.73125 -0.00046385 -0.27611 -0.00017514 634.3251800621464 52.832 0.47339 56.351 56.071 56.544 3.5192 44 35 2 0 0 0 0.46869 2 10950 10950;11041 3.9444 0.66309 1 149250 26514 9541 16582 16591 30879;30880 30879 0.014369793001151265 LWARRQWHD 9 Unmodified _LWARRQWHD_ 0 0 0 L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 634.826904296875 2 634.325788 1266.63702 0.54106 0.00034321 -1.2767 -0.00080985 -0.73564 -0.00046664 634.3249753393806 52.643 0.57935 56.282 56.038 56.618 3.639 48 37 2 0 0 0 0.46869 1 11005 11005 3.9444 0 1 107680 26515 9541 16582 16591 30881 30881 0.014369793001151265 LWARRQWHD 9 Unmodified _LWARRQWHD_ 0 0 0 L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.32470703125 2 634.325788 1266.63702 0.4821 0.00030581 -1.4227 -0.00090246 -0.94061 -0.00059665 634.324874021489 52.823 0.58418 56.42 56.121 56.705 3.5979 45 36 2 0 0 0 0.46869 1 10983 10983 3.9444 0.66309 1 140220 26516 9541 16582 16591 30882 30882 0.014369793001151265 LWCFPLFNEC 10 Unmodified _LWCFPLFNEC_ 0 0 0 REV__L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|182|1|anti-sense REV__L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|182|1|anti-sense MSMS UPN47_class_I_Rep_2 3 636.2832641601562 2 636.28302 1270.55149 NaN NaN NaN NaN NaN NaN NaN 77.369 1 80.7 80.2 81.2 3.3315 0 0 0 0.53105 1 19188 19188 1.8442 0 1 + 26517 29601 16583 16592 30883 30883 -0.07296689992062966 LWCFPLFNEC 10 Unmodified _LWCFPLFNEC_ 0 0 0 REV__L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|182|1|anti-sense REV__L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|182|1|anti-sense MSMS UPN47_class_I_Rep_3 4 636.28369140625 2 636.28302 1270.55149 NaN NaN NaN NaN NaN NaN NaN 77.664 1 80.945 80.445 81.445 3.2816 0 0 0 0.53105 1 19348 19348 1.8442 0.36234 1 + 26518 29601 16583 16592 30884 30884 -0.07296689992062966 LWCIRKFK 8 Unmodified _LWCIRKFK_ 0 0 0 REV__ENST00000518738.1_1_8:104061129-104063298:+|nuORF REV__ENST00000518738.1_1_8:104061129-104063298:+|nuORF MSMS UPN48_class_I_Rep_2 6 547.3207397460938 2 547.320597 1092.62664 NaN NaN NaN NaN NaN NaN NaN 35.553 1 39.241 38.741 39.741 3.6877 0 0 0 0.40738 1 5874 5874 0.79363 0.10326 1 + 26519 22771 16584 16593 30885 30885 0.0840328032134039 LWCKRNMR 8 Unmodified _LWCKRNMR_ 0 0 0 IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 553.78955078125 2 553.789138 1105.56372 NaN NaN NaN NaN NaN NaN NaN 94.207 1 94.207 93.707 94.707 0 0 0 0 0.40746 1 22852 22852 0.69038 0 1 26520 8463 16585 16594 30886 30886 0.015163912616344533 LWCKWGIF 8 Unmodified _LWCKWGIF_ 0 0 0 REV__ENSG00000111850.11,SMIM8,chr6,+,I5.1,87371713,87374687|36|5.02|1|intron REV__ENSG00000111850.11,SMIM8,chr6,+,I5.1,87371713,87374687|36|5.02|1|intron MULTI-SECPEP UPN48_class_I_Rep_1 5 526.7886352539062 2 526.772948 1051.53134 0.43768 0.00023056 1.9928 0.0010498 2.4305 0.0012803 526.7738995550994 63.089 0.30655 66.552 66.345 66.652 3.4625 25 17 2 0 0 0 0.72333 1 14180 14180 9.3474 0 1 72226 + 26521 18469 16586 16595 30887 30887 0.0076392713028781145 LWCLCQVL 8 Unmodified _LWCLCQVL_ 0 0 0 L1PA7_dup815|chr1:231944773-231948615:+|2.503148983573096|0.0470415053081171|5.73|151.0|183|2|anti-sense;L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|286|3|anti-sense;L1PA7_dup280|chr1:88816886-88817333:+|2.55575529256455|0.1200212863388797|4.41|151.0|21|2|anti-sense L1PA7_dup815|chr1:231944773-231948615:+|2.503148983573096|0.0470415053081171|5.73|151.0|183|2|anti-sense L1PA7_dup815|chr1:231944773-231948615:+|2.503148983573096|0.0470415053081171|5.73|151.0|183|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 489.2502746582031 2 489.250991 976.48743 0.28316 0.00013854 -1.0363 -0.00050703 -0.75318 -0.00036849 489.25040224710784 82.79 0.22269 82.79 82.738 82.961 0 23 18 2 0 0 0 0.82752 1 19643 19643 13.508 0.97634 1 104680 26522 14794 16587 16596 30888 30888 -0.0017542535833854345 LWDVFVPLSM 10 Unmodified _LWDVFVPLSM_ 0 0 0 REV__L1MB4_dup1433|chr3:17714068-17714687:+|1.0402550438434135|0.0081566085517333|6.99|151.0|41|3|anti-sense REV__L1MB4_dup1433|chr3:17714068-17714687:+|1.0402550438434135|0.0081566085517333|6.99|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_3 4 603.8145141601562 2 603.81501 1205.61547 NaN NaN NaN NaN NaN NaN NaN 32.624 1 35.911 35.411 36.411 3.2867 0 0 0 0.53105 1 5717 5717 3.2813 0 1 + 26523 25937 16588 16597 30889 30889 0.020884134365360296 LWEEYWSD 8 Unmodified _LWEEYWSD_ 0 0 0 REV__L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|176|2|anti-sense REV__L1MD1_dup641|chr2:97781608-97785122:+|2.946154174676851|0.1619973790735026|4.18|151.0|176|2|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2733154296875 2 564.237647 1126.46074 NaN NaN NaN NaN NaN NaN NaN 19.312 1 22.933 22.433 23.433 3.6215 0 0 0 0.40746 1 1434 1434 0.69038 0 1 + 26524 27373 16589 16598 30890 30890 -0.0974311944432884 LWELWDAV 8 Unmodified _LWELWDAV_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS UPN47_class_I_Rep_1 2 516.2644653320312 2 516.263468 1030.51238 0.38935 0.00020101 1.2209 0.00063028 1.6102 0.00083129 516.2642074613607 109.15 0.1993 112.76 112.68 112.88 3.6046 82 20 5 0 0 0 0.82752 1 26905 26905 2.5775 0 1 10381000 + 26525 19910 16590 16599 30891 30891 -0.0016533095977138146 LWELWDAV 8 Unmodified _LWELWDAV_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS UPN48_class_I_Rep_2 6 516.2642822265625 2 516.263468 1030.51238 0.34751 0.00017941 1.1392 0.00058811 1.4867 0.00076752 516.2642247520462 109.15 0.19221 112.82 112.75 112.94 3.6715 82 24 4 0 0 0 0.82752 1 25963 25963 2.5775 0 1 11096000 + 26526 19910 16590 16599 30892 30892 -0.0016533095977138146 LWELWDAV 8 Unmodified _LWELWDAV_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 516.263468 1030.51238 0.25046 0.00012931 1.488 0.00076819 1.7384 0.00089749 516.7656338507686 109.25 0.022827 112.89 112.88 112.9 3.6321 0.11367 0.00023129 NaN 2.5775 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 176760 + 26527 19910 16590 16599 -0.0016533095977138146 LWELWDAV 8 Unmodified _LWELWDAV_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 516.263468 1030.51238 0.34882 0.00018008 1.2936 0.00066783 1.6424 0.00084792 516.2642454776072 109.12 0.17342 112.79 112.75 112.92 3.6751 0.018348 3.0585E-05 NaN 2.5775 79 23 4 NaN NaN NaN NaN 0 NaN NaN 0 10302000 + 26528 19910 16590 16599 -0.0016533095977138146 LWFATLEF 8 Unmodified _LWFATLEF_ 0 0 0 REV__L1PA15_dup4223|chr9:21891087-21893173:+|1.334254699264965|0.0435493908604724|4.94|151.0|117|2|anti-sense REV__L1PA15_dup4223|chr9:21891087-21893173:+|1.334254699264965|0.0435493908604724|4.94|151.0|117|2|anti-sense MSMS UPN48_class_I_Rep_3 7 513.7662353515625 2 513.768386 1025.52222 NaN NaN NaN NaN NaN NaN NaN 52.361 1 55.959 55.459 56.459 3.5979 0 0 0 0.39819 1 10807 10807 8.5933 0.43775 1 + 26529 29243 16591 16600 30893 30893 0.010478570456371017 LWFCLFVCL 9 Unmodified _LWFCLFVCL_ 0 0 0 ENST00000481559.6_1_5:152869375-153085697:+|nuORF ENST00000481559.6_1_5:152869375-153085697:+|nuORF ENST00000481559.6_1_5:152869375-153085697:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 572.2899780273438 2 572.290117 1142.56568 0.44741 0.00025605 -0.58489 -0.00033472 -0.13748 -7.8676E-05 572.289570452628 70.33 0.19655 73.79 73.66 73.856 3.4598 19 15 2 0 0 0 0.2896 1 16387 16387 14.582 0 1 50232 26530 6999 16592 16601 30894 30894 0.00010007226910602185 LWFCWHSR 8 Unmodified _LWFCWHSR_ 0 0 0 REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|64|2|anti-sense REV__L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|64|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.77099609375 2 567.768729 1133.5229 0.19426 0.0001103 1.2441 0.00070638 1.4384 0.00081668 567.7699556038201 48.786 0.19391 52.468 52.413 52.607 3.6819 15 13 2 0 0 0 0.82752 1 10544 10544 2.8892 0.82947 1 44013 + 26531 27515 16593 16602 30895 30895 -0.03851626786331508 LWFFDQVLH 9 Unmodified _LWFFDQVLH_ 0 0 0 REV__L1PA5_dup6808|chrX:63446464-63452482:-|1.1153272597325974|0.0841930431535194|3.73|151.0|208|1|anti-sense REV__L1PA5_dup6808|chrX:63446464-63452482:-|1.1153272597325974|0.0841930431535194|3.73|151.0|208|1|anti-sense MSMS UPN47_class_I_Rep_1 2 602.811767578125 2 602.811116 1203.60768 NaN NaN NaN NaN NaN NaN NaN 38.318 1 41.984 41.484 42.484 3.6652 0 0 0 0.39326 1 7370 7370 2.3027 1.2313 1 + 26532 29324 16594 16603 30896 30896 0.014020222312865371 LWFGVGVW 8 Unmodified _LWFGVGVW_ 0 0 0 REV__L1MD2_dup1228|chr2:131137776-131139412:-|1.5856292657831776|0.2417083832380936|2.71|151.0|90|2|anti-sense REV__L1MD2_dup1228|chr2:131137776-131139412:-|1.5856292657831776|0.2417083832380936|2.71|151.0|90|2|anti-sense MSMS UPN46_class_I_Rep_3 1 482.2603454589844 2 482.257988 962.501424 NaN NaN NaN NaN NaN NaN NaN 100.98 1 100.98 100.48 101.48 0 0 0 0 0.40738 1 24632 24632 0.79363 0 1 + 26533 27390 16595 16604 30897 30897 0.018673114566240656 LWFHRRCW 8 Unmodified _LWFHRRCW_ 0 0 0 Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|18|3|anti-sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|18|3|anti-sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|18|3|anti-sense MSMS UPN48_class_I_Rep_3 7 602.3018188476562 2 602.30327 1202.59199 NaN NaN NaN NaN NaN NaN NaN 33.573 1 37.253 36.753 37.753 3.6797 0 0 0 0.40738 1 5237 5237 0.79363 0.19213 1 26534 521 16596 16605 30898 30898 -0.001205427667400727 LWFLAPAL 8 Unmodified _LWFLAPAL_ 0 0 0 REV__L1PA6_dup2629|chr6:144041198-144047335:-|8.46197267013206|0.0328993634177466|8.01|151.0|285|2|anti-sense REV__L1PA6_dup2629|chr6:144041198-144047335:-|8.46197267013206|0.0328993634177466|8.01|151.0|285|2|anti-sense MSMS UPN48_class_I_Rep_2 6 465.777587890625 2 465.776014 929.537475 NaN NaN NaN NaN NaN NaN NaN 73.12 1 76.685 76.185 77.185 3.5645 0 0 0 0.40738 1 17156 17156 0.79363 0 1 + 26535 28893 16597 16606 30899 30899 0.06988768633470954 LWFLAPAL 8 Unmodified _LWFLAPAL_ 0 0 0 REV__L1PA6_dup2629|chr6:144041198-144047335:-|8.46197267013206|0.0328993634177466|8.01|151.0|285|2|anti-sense REV__L1PA6_dup2629|chr6:144041198-144047335:-|8.46197267013206|0.0328993634177466|8.01|151.0|285|2|anti-sense MSMS UPN48_class_I_Rep_2 6 465.777099609375 2 465.776014 929.537475 NaN NaN NaN NaN NaN NaN NaN 73.262 1 76.835 76.335 77.335 3.5729 0 0 0 0.40738 1 17195 17195 0.79363 0 1 + 26536 28893 16597 16606 30900 30900 0.06988768633470954 LWFLAWYWI 9 Unmodified _LWFLAWYWI_ 0 0 0 REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|278|1|anti-sense REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|278|1|anti-sense MSMS UPN46_class_I_Rep_3 1 649.3418579101562 2 649.342052 1296.66955 NaN NaN NaN NaN NaN NaN NaN 75.002 1 75.002 74.502 75.502 0 0 0 0 0.40038 1 17413 17413 0.6015 0 1 + 26537 30602 16598 16607 30901 30901 0.03308373650406793 LWFLTPPL 8 Unmodified _LWFLTPPL_ 0 0 0 REV__L1PA5_dup5242|chr7:114990351-114995897:-|5.052159401470676|0.1464154544109933|5.11|151.0|268|2|anti-sense REV__L1PA5_dup5242|chr7:114990351-114995897:-|5.052159401470676|0.1464154544109933|5.11|151.0|268|2|anti-sense MSMS UPN46_class_I_Rep_3 1 493.68408203125 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 78.427 1 78.427 77.927 78.927 0 0 0 0 0.40738 1 18368 18368 0.79363 0 1 + 26538 29778 16599 16608 30902 30902 0.07033037804944797 LWFTRCRL 8 Unmodified _LWFTRCRL_ 0 0 0 MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|328|3|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|328|3|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|328|3|anti-sense MSMS UPN47_class_I_Rep_1 2 547.7999877929688 2 547.800029 1093.5855 NaN NaN NaN NaN NaN NaN NaN 31.685 1 35.414 34.914 35.914 3.7293 0 0 0 0.40604 1 5351 5351 2.5775 0 1 26539 16058 16600 16609 30903 30903 0.042455192818579235 LWGFRPQL 8 Unmodified _LWGFRPQL_ 0 0 0 REV__MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|26|1|anti-sense REV__MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|26|1|anti-sense MSMS UPN47_class_I_Rep_3 4 508.80267333984375 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 31.143 1 34.442 33.942 34.942 3.2991 0 0 0 0.39819 1 5269 5269 8.5933 0 1 + 26540 31431 16601 16610 30904 30904 0.053177877509369864 LWGFWKGY 8 Unmodified _LWGFWKGY_ 0 0 0 REV__ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|17|1|sense REV__ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|17|1|sense MSMS UPN48_class_I_Rep_2 6 528.7689819335938 2 528.76872 1055.52289 NaN NaN NaN NaN NaN NaN NaN 33.618 1 37.279 36.779 37.779 3.6607 0 0 0 0.40738 1 5327 5327 0.79363 0 1 + 26541 23265 16602 16611 30905 30905 -0.0026530351467499713 LWGGRRRE 8 Unmodified _LWGGRRRE_ 0 0 0 L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|55|2|sense L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|55|2|sense L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|55|2|sense MSMS UPN47_class_I_Rep_2 3 515.2876586914062 2 515.288674 1028.5628 NaN NaN NaN NaN NaN NaN NaN 26.977 1 30.475 29.975 30.975 3.4986 0 0 0 0.40738 1 3982 3982 0.79363 0 1 26542 14325 16603 16612 30906 30906 0.04965636208612523 LWGPVHRLF 9 Unmodified _LWGPVHRLF_ 0 0 0 REV__nc|ENSG00000167536|Q6UX07-3|DHRS13 REV__nc|ENSG00000167536|Q6UX07-3|DHRS13 MSMS UPN48_class_I_Rep_2 6 562.6829223632812 2 562.821818 1123.62908 NaN NaN NaN NaN NaN NaN NaN 78.863 1 82.496 81.996 82.996 3.6331 0 0 0 0.39428 1 18717 18717 2.0598 0.21551 1 + 26543 20222 16604 16613 30907 30907 0.0722145205063498 LWGWGGWGEL 10 Unmodified _LWGWGGWGEL_ 0 0 0 ENSG00000088854.12,C20orf194,chr20,-,I9.1,3340640,3343675|46|11.71|1|intron ENSG00000088854.12,C20orf194,chr20,-,I9.1,3340640,3343675|46|11.71|1|intron ENSG00000088854.12,C20orf194,chr20,-,I9.1,3340640,3343675|46|11.71|1|intron MSMS UPN47_class_I_Rep_3 4 580.7809448242188 2 580.779816 1159.54508 NaN NaN NaN NaN NaN NaN NaN 84.509 1 87.871 87.371 88.371 3.3615 0 0 0 0.53105 1 21210 21210 10.824 1.4765 1 26544 1321 16605 16614 30908 30908 -0.028311238368814884 LWHFCSPTPS 10 Unmodified _LWHFCSPTPS_ 0 0 0 REV__THE1C-int_dup868|chr7:116244132-116245710:-|2.416576673701566|0.4467940189701673|2.44|151.0|52|1|anti-sense REV__THE1C-int_dup868|chr7:116244132-116245710:-|2.416576673701566|0.4467940189701673|2.44|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_2 3 587.7698364257812 2 587.771134 1173.52771 NaN NaN NaN NaN NaN NaN NaN 24.851 1 28.334 27.834 28.834 3.483 0 0 0 0.53105 1 3361 3361 1.8442 0 1 + 26545 32294 16606 16615 30909 30909 -0.05210787434202757 LWHLYSLAL 9 Unmodified _LWHLYSLAL_ 0 0 0 REV__L1PA15_dup8194|chr22:20832755-20833566:-|1.2977704223034174|0.0147860769120064|6.46|151.0|25|1|anti-sense REV__L1PA15_dup8194|chr22:20832755-20833566:-|1.2977704223034174|0.0147860769120064|6.46|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_2 6 558.3158569335938 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 90.23 1 93.977 93.477 94.477 3.7471 0 0 0 0.39428 1 21508 21508 2.0598 0 1 + 26546 29289 16607 16616 30910 30910 0.06479210236625477 LWHYSQQQR 9 Unmodified _LWHYSQQQR_ 0 0 0 L1PA7_dup12685|chr20:35162099-35165045:+|1.0437772576722686|0.0552519064777706|4.24|151.0|54|2|sense;L1PA7_dup9458|chr10:96573706-96575082:+|2.7698507962340937|0.068215453401184|5.34|151.0|7|1|sense;L1PA6_dup200|chr1:107718040-107720222:+|1.1700474700794836|0.0219672619134896|5.74|151.0|36|2|sense;L1PA5_dup4517|chr6:83896912-83901677:-|1.3753312037675869|0.0232464483041231|5.89|151.0|72|2|sense;L1PA5_dup10241|chr16:68180499-68181220:-|1.328333519383569|0.0861417928313202|3.95|151.0|14|3|sense;L1PA4_dup2344|chr3:132610208-132613387:+|1.171859952252886|0.1992518142052096|2.56|151.0|45|2|sense;L1HS_dup219|chr2:197062487-197068374:+|3.600647731926275|0.0510553637323344|6.14|151.0|105|2|sense L1PA7_dup12685|chr20:35162099-35165045:+|1.0437772576722686|0.0552519064777706|4.24|151.0|54|2|sense L1PA7_dup12685|chr20:35162099-35165045:+|1.0437772576722686|0.0552519064777706|4.24|151.0|54|2|sense MSMS UPN47_class_I_Rep_2 3 623.3129272460938 2 623.309803 1244.60505 NaN NaN NaN NaN NaN NaN NaN 72.842 1 76.139 75.639 76.639 3.2971 0 0 0 0.40038 1 17877 17877 0.6015 0.076735 1 26547 8476 16608 16617 30911 30911 -0.007464331736855456 LWIARQRLLF 10 Unmodified _LWIARQRLLF_ 0 0 0 L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|108|3|anti-sense L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|108|3|anti-sense L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|108|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.271484375 3 439.27143 1314.79246 -0.0039486 -1.7345E-06 -0.063103 -2.7719E-05 -0.067051 -2.9454E-05 439.2713397210006 38.514 0.84077 42.018 41.669 42.51 3.5048 103 69 2 0 0 0 0.56433 1 6728 6728 0.77653 0 1 193640 26548 9530 16609 16618 30912 30912 0.14765630101692295 LWIARQRLLF 10 Unmodified _LWIARQRLLF_ 0 0 0 L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|108|3|anti-sense L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|108|3|anti-sense L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|108|3|anti-sense MSMS UPN48_class_I_Rep_2 6 439.27130126953125 3 439.27143 1314.79246 NaN NaN NaN NaN NaN NaN NaN 38.116 1 41.832 41.332 42.332 3.7164 0 0 0 0.53105 1 6603 6603 0.77653 0 1 26549 9530 16609 16618 30913 30913 0.14765630101692295 LWKGSLVH 8 Unmodified _LWKGSLVH_ 0 0 0 REV__nc|nan|Q9H3H3-1|C11orf68 REV__nc|nan|Q9H3H3-1|C11orf68 MSMS UPN48_class_I_Rep_2 6 470.2743835449219 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 54.389 1 57.97 57.47 58.47 3.5817 0 0 0 0.40643 1 11491 11491 2.0598 0 1 + 26550 20560 16610 16619 30914 30914 0.062060988596158495 LWKKFWRLWKK 11 Unmodified _LWKKFWRLWKK_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 540.3304443359375 3 540.329279 1617.96601 NaN NaN NaN NaN NaN NaN NaN 82.756 1 82.756 82.256 83.256 0 0 0 0 0.38417 1 19621 19621 0.08335 0 1 + 26551 25749 16611 16620 30915 30915 0.18174415877956562 LWKKFWRLWKK 11 Unmodified _LWKKFWRLWKK_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 540.3295288085938 3 540.329279 1617.96601 NaN NaN NaN NaN NaN NaN NaN 94.313 1 94.313 93.813 94.813 0 0 0 0 0.38417 1 22879 22879 0 0 1 + 26552 25749 16611 16620 30916 30916 0.18174415877956562 LWKKFWRLWKK 11 Unmodified _LWKKFWRLWKK_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.6640014648438 3 540.329279 1617.96601 0.37777 0.00020412 -0.35101 -0.00018966 0.026763 1.4461E-05 540.3289221525273 107.22 0.33115 110.85 110.56 110.89 3.6299 85 40 4 0 0 0 0.68478 2 25789 25789;25820 0.094841 0 1 589470 + 26553 25749 16611 16620 30917;30918 30917 0.18174415877956562 LWKKFWRLWKK 11 Unmodified _LWKKFWRLWKK_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 540.329279 1617.96601 0.37777 0.00020412 -0.35101 -0.00018966 0.026763 1.4461E-05 540.3289221525273 107.22 0.33115 110.85 110.56 110.89 3.6299 0.026604 0.00012168 NaN 0.094841 85 40 4 NaN NaN NaN NaN 0 NaN NaN 0 589470 + 26554 25749 16611 16620 0.18174415877956562 LWKKFWRLWKK 11 Unmodified _LWKKFWRLWKK_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 540.329279 1617.96601 0.4746 0.00025644 -0.4789 -0.00025877 -0.0043076 -2.3275E-06 540.3289999951988 107.11 0.20887 110.79 110.71 110.91 3.6783 -0.028139 -8.5632E-05 NaN 0.094841 58 28 3 NaN NaN NaN NaN 0 NaN NaN 0 338410 + 26555 25749 16611 16620 0.18174415877956562 LWKKFWRLWKK 11 Unmodified _LWKKFWRLWKK_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 540.329279 1617.96601 0.54589 0.00029496 -0.64783 -0.00035004 -0.10194 -5.5079E-05 540.3288590075674 107.13 0.20377 110.82 110.7 110.91 3.6899 0.0015351 -0.00035946 NaN 0.094841 47 27 2 NaN NaN NaN NaN 0 NaN NaN 0 297780 + 26556 25749 16611 16620 0.18174415877956562 LWKKTPAR 8 Unmodified _LWKKTPAR_ 0 0 0 nc|ENSG00000132313|Q9NZE8-2|MRPL35;ENSG00000132313|ENST00000337109|MRPL35 nc|ENSG00000132313|Q9NZE8-2|MRPL35 nc|ENSG00000132313|Q9NZE8-2|MRPL35 MSMS UPN47_class_I_Rep_2 3 500.3108215332031 2 500.308544 998.602535 NaN NaN NaN NaN NaN NaN NaN 28.944 1 32.437 31.937 32.937 3.4923 0 0 0 0.40659 1 4565 4565 1.8442 0 1 26557 2743 16612 16621 30919 30919 0.10317763159321203 LWKKWVCD 8 Unmodified _LWKKWVCD_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MSMS UPN46_class_I_Rep_3 1 539.2794799804688 2 539.281137 1076.54772 NaN NaN NaN NaN NaN NaN NaN 89.94 1 89.94 89.44 90.44 0 0 0 0 0.40746 1 21664 21664 0.69038 0 1 26558 16841 16613 16622 30920 30920 0.012510082964126923 LWKLYLTVKIK 11 Unmodified _LWKLYLTVKIK_ 0 0 0 MER4-int_dup2605|chr17:21133628-21136016:-|6.715337729044181|0.1793899380738371|5.23|151.0|5|1|sense MER4-int_dup2605|chr17:21133628-21136016:-|6.715337729044181|0.1793899380738371|5.23|151.0|5|1|sense MER4-int_dup2605|chr17:21133628-21136016:-|6.715337729044181|0.1793899380738371|5.23|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 469.30560302734375 3 468.970758 1403.89044 0.11094 5.2026E-05 0.6103 0.00028621 0.72123 0.00033824 469.3054647836671 48.615 0.30467 52.244 52.131 52.436 3.6291 37 23 2 0 0 0 0.68132 1 9696 9696 0.40827 0.26837 1 168080 26559 15945 16614 16623 30921 30921 0.20465393906988538 LWKSKFTA 8 Unmodified _LWKSKFTA_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|395|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|395|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|395|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.78302001953125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 29.289 1 33.047 32.547 33.547 3.7578 0 0 0 0.40659 1 4631 4631 1.8442 0 1 26560 13660 16615 16624 30922 30922 0.05850965656804874 LWKTLRRF 8 Unmodified _LWKTLRRF_ 0 0 0 L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|12|1|sense L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|12|1|sense L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 560.340576171875 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 95.741 1 99.506 99.006 100.01 3.7648 0 0 0 0.40746 1 23762 23762 0.69038 0 1 26561 9658 16616 16625 30923 30923 0.11669427459014514 LWKWKART 8 Unmodified _LWKWKART_ 0 0 0 L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|44|2|sense L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|44|2|sense L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|44|2|sense MSMS UPN47_class_I_Rep_3 4 544.8222045898438 2 544.821818 1087.62908 NaN NaN NaN NaN NaN NaN NaN 17.472 1 20.831 20.331 21.331 3.3581 0 0 0 0.40625 1 1284 1284 2.3027 0.4585 1 26562 9298 16617 16626 30924 30924 0.08877452050660395 LWKWKLLQI 9 Unmodified _LWKWKLLQI_ 0 0 0 REV__ENST00000323224.7_1_18:672908-673115:+|nuORF REV__ENST00000323224.7_1_18:672908-673115:+|nuORF MSMS UPN46_class_I_Rep_3 1 614.3829956054688 2 614.384251 1226.75395 NaN NaN NaN NaN NaN NaN NaN 67.169 1 67.169 66.669 67.669 0 0 0 0 0.4007 1 15274 15274 0.52476 0.066424 1 + 26563 21749 16618 16627 30925 30925 0.14964324467177903 LWLELVSY 8 Unmodified _LWLELVSY_ 0 0 0 REV__HAL1ME_dup996|chr2:127743428-127743771:+|2.1176508009387502|0.2586803419859041|3.03|151.0|19|2|anti-sense REV__HAL1ME_dup996|chr2:127743428-127743771:+|2.1176508009387502|0.2586803419859041|3.03|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_2 6 511.71514892578125 2 511.781493 1021.54843 NaN NaN NaN NaN NaN NaN NaN 44.236 1 47.998 47.498 48.498 3.7617 0 0 0 0.40604 1 8408 8408 2.5775 0 1 + 26564 23506 16619 16628 30926 30926 0.03852126217100249 LWLFICPPF 9 Unmodified _LWLFICPPF_ 0 0 0 REV__L1MC1_dup7320|chr9:63821177-63821480:-|2.0909961704898707|0.1507536408713441|3.79|151.0|18|2|anti-sense REV__L1MC1_dup7320|chr9:63821177-63821480:-|2.0909961704898707|0.1507536408713441|3.79|151.0|18|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.3032836914062 2 568.304081 1134.59361 0.037833 2.15E-05 -1.6619 -0.00094448 -1.6241 -0.00092298 568.3031716791859 43.203 0.62456 46.89 46.694 47.318 3.6875 47 35 2 0 0 0 0.50015 1 8963 8963 0.6015 0.076735 1 59681 + 26565 26595 16620 16629 30927 30927 0.0316965347860787 LWLFWLFWFHM 11 Unmodified _LWLFWLFWFHM_ 0 0 0 L1PB4_dup1704|chr4:98549599-98551481:-|1.1697272374619554|0.1024785772651532|3.51|151.0|71|1|anti-sense L1PB4_dup1704|chr4:98549599-98551481:-|1.1697272374619554|0.1024785772651532|3.51|151.0|71|1|anti-sense L1PB4_dup1704|chr4:98549599-98551481:-|1.1697272374619554|0.1024785772651532|3.51|151.0|71|1|anti-sense MSMS UPN46_class_I_Rep_3 1 542.3665161132812 3 542.609054 1624.80533 NaN NaN NaN NaN NaN NaN NaN 48.956 1 48.956 48.456 49.456 0 0 0 0 0.38417 1 10243 10243 0.094841 0.094841 1 26566 15294 16621 16630 30928 30928 0.017923251695265208 LWLLAPRRRVR 11 Unmodified _LWLLAPRRRVR_ 0 0 0 REV__L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|98|1|anti-sense REV__L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|98|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.3091735839844 3 479.308878 1434.90481 0.33467 0.00016041 0.28665 0.00013739 0.62131 0.0002978 479.30899455910554 57.438 0.15143 60.952 60.869 61.021 3.5142 13 10 2 0 0 0 0.68478 1 12441 12441 0.094841 0 1 101720 + 26567 29845 16622 16631 30929 30929 0.20474903898525554 LWLLCFQNV 9 Unmodified _LWLLCFQNV_ 0 0 0 HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|184|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|184|1|anti-sense HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|184|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 568.3028564453125 2 568.30207 1134.58959 0.1528 8.6837E-05 1.6913 0.0009612 1.8442 0.001048 568.3029694052392 43.698 0.39845 46.94 46.805 47.203 3.2419 29 22 2 0 0 0 0.41259 1 9109 9109 7.2892 2.0586 1 45817 26568 8292 16623 16632 30930 30930 0.02767563984912158 LWLMSAIY 8 Unmodified _LWLMSAIY_ 0 0 0 REV__L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|244|1|anti-sense REV__L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|244|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.1658020019531 2 498.764789 995.515025 NaN NaN NaN NaN NaN NaN NaN 65.008 1 65.008 64.508 65.508 0 0 0 0 0.40604 1 14672 14672 2.5775 0 1 + 26569 29438 16624 16633 30931 30931 0.01708801173538177 LWLPCRHC 8 Unmodified _LWLPCRHC_ 0 0 0 REV__ERVL-E-int_dup753|chr1:226357508-226357984:-|1.0224601099708013|0.1005819635964774|3.35|151.0|12|3|sense REV__ERVL-E-int_dup753|chr1:226357508-226357984:-|1.0224601099708013|0.1005819635964774|3.35|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 514.250732421875 2 514.251857 1026.48916 NaN NaN NaN NaN NaN NaN NaN 71.314 1 74.832 74.332 75.332 3.5185 0 0 0 0.40581 1 16552 16552 2.8892 0 1 + 26570 23293 16625 16634 30932 30932 -0.02302371549740201 LWLPHLAPL 9 Unmodified _LWLPHLAPL_ 0 0 0 ENST00000528813.1_1_11:56099435-56099735:-|nuORF ENST00000528813.1_1_11:56099435-56099735:-|nuORF ENST00000528813.1_1_11:56099435-56099735:-|nuORF MSMS UPN48_class_I_Rep_3 7 530.33203125 2 530.32112 1058.62769 NaN NaN NaN NaN NaN NaN NaN 66.594 1 70.102 69.602 70.602 3.5077 0 0 0 0.381 1 15137 15137 5.2307 0.47466 1 26571 7282 16626 16635 30933 30933 0.1007181796187524 LWLTPYFGLR 10 Unmodified _LWLTPYFGLR_ 0 0 0 ENST00000581089.1_1_17:25621216-25630672:+|nuORF ENST00000581089.1_1_17:25621216-25630672:+|nuORF ENST00000581089.1_1_17:25621216-25630672:+|nuORF MSMS UPN46_class_I_Rep_3 1 633.3695068359375 2 633.355691 1264.69683 NaN NaN NaN NaN NaN NaN NaN 91.677 1 91.677 91.177 92.177 0 0 0 0 0.53105 1 22153 22153 3.2813 0 1 26572 7555 16627 16636 30934 30934 0.07506857190787741 LWLWFEFPP 9 Unmodified _LWLWFEFPP_ 0 0 0 L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|309|2|anti-sense L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|309|2|anti-sense L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|309|2|anti-sense MSMS UPN48_class_I_Rep_1 5 617.818115234375 2 617.81841 1233.62227 NaN NaN NaN NaN NaN NaN NaN 30.421 1 33.963 33.463 34.463 3.542 0 0 0 0.40038 1 4362 4362 0.6015 0 1 26573 14254 16628 16637 30935 30935 0.014800943793943588 LWLWTHWR 8 Unmodified _LWLWTHWR_ 0 0 0 REV__ENST00000561841.1_1_16:2089927-2093675:-|nuORF REV__ENST00000561841.1_1_16:2089927-2093675:-|nuORF MSMS UPN47_class_I_Rep_3 4 599.3212890625 2 599.319443 1196.62433 NaN NaN NaN NaN NaN NaN NaN 66.047 1 69.232 68.732 69.732 3.1853 0 0 0 0.40738 1 15903 15903 0.79363 0.10326 1 + 26574 23031 16629 16638 30936 30936 0.03388567907859397 LWLYGLFFG 9 Unmodified _LWLYGLFFG_ 0 0 0 L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|66|1|anti-sense L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|66|1|anti-sense L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|66|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 558.3010864257812 2 558.299853 1114.58515 0.49706 0.00027751 2.2503 0.0012563 2.7474 0.0015339 558.3010469765198 38.92 0.0672 42.425 42.389 42.457 3.5048 6 5 2 0 0 0 0.48414 1 6797 6797 2.3027 0 1 44522 26575 14167 16630 16639 30937 30937 0.032444228336544256 LWMCCFFH 8 Unmodified _LWMCCFFH_ 0 0 0 REV__L1MC1_dup5608|chr6:142206020-142206982:+|1.4645159655989155|0.0432880656067067|5.08|151.0|41|2|anti-sense REV__L1MC1_dup5608|chr6:142206020-142206982:+|1.4645159655989155|0.0432880656067067|5.08|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7428588867188 2 543.721544 1085.42853 NaN NaN NaN NaN NaN NaN NaN 115.38 1 118.97 118.47 119.47 3.5943 0 0 0 0.40581 1 28544 28544 2.8892 0 1 + 26576 26578 16631 16640 30938 30938 -0.11076224924318012 LWMGFYYN 8 Unmodified _LWMGFYYN_ 0 0 0 REV__L1MC1_dup6575|chr8:25253735-25254497:+|1.9255174248353568|0.062581690792776|4.94|150.0|34|1|anti-sense REV__L1MC1_dup6575|chr8:25253735-25254497:+|1.9255174248353568|0.062581690792776|4.94|150.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.2418212890625 2 547.244221 1092.47389 NaN NaN NaN NaN NaN NaN NaN 34.297 1 37.983 37.483 38.483 3.6859 0 0 0 0.40604 1 6153 6153 2.5775 0.27475 1 + 26577 26590 16632 16641 30939 30939 -0.0686495986594764 LWMGPKITY 9 Unmodified _LWMGPKITY_ 0 0 0 MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|30|2|anti-sense MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|30|2|anti-sense MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|30|2|anti-sense MSMS UPN47_class_I_Rep_2 3 554.7971801757812 2 554.79662 1107.57869 NaN NaN NaN NaN NaN NaN NaN 45.387 1 48.74 48.24 49.24 3.3534 0 0 0 0.38916 1 9559 9559 3.2813 0.28607 1 26578 16211 16633 16642 30940 30940 0.029201616106320216 LWMKFFVF 8 Unmodified _LWMKFFVF_ 0 0 0 L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|103|2|anti-sense L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|103|2|anti-sense L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|103|2|anti-sense MSMS UPN48_class_I_Rep_3 7 559.2972412109375 2 559.298799 1116.58304 NaN NaN NaN NaN NaN NaN NaN 18.14 1 21.708 21.208 22.208 3.5679 0 0 0 0.40738 1 1151 1151 0.79363 0 1 26579 15470 16634 16643 30941 30941 0.02941670824202447 LWNNSIIPYL 10 Unmodified _LWNNSIIPYL_ 0 0 0 nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 MULTI-MSMS UPN48_class_I_Rep_2 6 616.8367309570312 2 616.837331 1231.66011 0.59798 0.00036886 -0.96728 -0.00059666 -0.3693 -0.0002278 616.8367336857231 57.125 0.56084 60.639 60.288 60.849 3.5142 82 47 2 0 0 0 0.55148 1 12255 12255 5.2969 0.39987 1 216870 26580 2848 16635 16644 30942 30942 0.05354560574232892 LWPLLARN 8 Unmodified _LWPLLARN_ 0 0 0 REV__ENST00000480460.1_1_22:20103056-20103595:-|nuORF REV__ENST00000480460.1_1_22:20103056-20103595:-|nuORF MSMS UPN48_class_I_Rep_1 5 491.796630859375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.658 1 72.11 71.61 72.61 3.4517 0 0 0 0.40625 1 15870 15870 2.3027 0 1 + 26581 18073 16636 16645 30943 30943 0.08446074267988024 LWPMWVME 8 Unmodified _LWPMWVME_ 0 0 0 L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|107|3|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|107|3|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|107|3|anti-sense MSMS UPN47_class_I_Rep_1 2 546.2564086914062 2 546.256274 1090.49799 NaN NaN NaN NaN NaN NaN NaN 119.03 1 122.63 122.13 123.13 3.6036 0 0 0 0.40738 1 29560 29560 0.79363 0 1 26582 15359 16637 16646 30944 30944 -0.04363442703925102 LWPPKKRQ 8 Unmodified _LWPPKKRQ_ 0 0 0 REV__ENSG00000007384|ENST00000262316|RHBDF1 REV__ENSG00000007384|ENST00000262316|RHBDF1 MULTI-MSMS UPN46_class_I_Rep_3 1 526.8215942382812 2 526.821818 1051.62908 -0.058247 -3.0686E-05 0.6986 0.00036804 0.64035 0.00033735 526.8219980064691 24.126 0.10427 24.126 24.059 24.163 0 15 9 2 0 0 0 0.82752 1 3134 3134 2.5775 0 1 63033 + 26583 17547 16638 16647 30945 30945 0.10533452050663072 LWPQGGGW 8 Unmodified _LWPQGGGW_ 0 0 0 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 MSMS UPN47_class_I_Rep_1 2 450.7138671875 2 450.72177 899.428987 NaN NaN NaN NaN NaN NaN NaN 117.64 1 121.24 120.74 121.74 3.6036 0 0 0 0.40581 1 29169 29169 2.8892 0 1 26584 4609 16639 16648 30946 30946 -0.02475022616943079 LWPQGGGW 8 Unmodified _LWPQGGGW_ 0 0 0 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 MSMS UPN47_class_I_Rep_2 3 450.71221923828125 2 450.72177 899.428987 NaN NaN NaN NaN NaN NaN NaN 118.09 1 121.57 121.07 122.07 3.4822 0 0 0 0.40738 1 28883 28883 0.79363 0 1 26585 4609 16639 16648 30947 30947 -0.02475022616943079 LWPQGGGW 8 Unmodified _LWPQGGGW_ 0 0 0 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 MSMS UPN48_class_I_Rep_2 6 450.76123046875 2 450.72177 899.428987 NaN NaN NaN NaN NaN NaN NaN 117.9 1 121.56 121.06 122.06 3.6627 0 0 0 0.40738 1 28264 28264 0.79363 0 1 26586 4609 16639 16648 30948 30948 -0.02475022616943079 LWPQGGGW 8 Unmodified _LWPQGGGW_ 0 0 0 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 MSMS UPN48_class_I_Rep_2 6 450.7118835449219 2 450.72177 899.428987 NaN NaN NaN NaN NaN NaN NaN 118.31 1 121.97 121.47 122.47 3.6627 0 0 0 0.40581 1 28364 28364 2.8892 0 1 26587 4609 16639 16648 30949 30949 -0.02475022616943079 LWPTIIVD 8 Unmodified _LWPTIIVD_ 0 0 0 Charlie4a_dup981|chr5:32154269-32154652:-|1.6761676302629709|0.0480058000515624|5.13|151.0|29|3|anti-sense Charlie4a_dup981|chr5:32154269-32154652:-|1.6761676302629709|0.0480058000515624|5.13|151.0|29|3|anti-sense Charlie4a_dup981|chr5:32154269-32154652:-|1.6761676302629709|0.0480058000515624|5.13|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 478.7773742675781 2 478.776211 955.537869 NaN NaN NaN NaN NaN NaN NaN 35.393 1 39.08 38.58 39.58 3.6877 0 0 0 0.40625 1 5827 5827 2.3027 1.6124 1 26588 527 16640 16649 30950 30950 0.05832143562679448 LWQAIKKG 8 Unmodified _LWQAIKKG_ 0 0 0 ENSG00000152749|ENST00000376958|GPR180 ENSG00000152749|ENST00000376958|GPR180 ENSG00000152749|ENST00000376958|GPR180 MSMS UPN48_class_I_Rep_2 6 472.28802490234375 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 87.536 1 91.264 90.764 91.764 3.7279 0 0 0 0.40604 1 20832 20832 2.5775 0.27475 1 26589 3627 16641 16650 30951 30951 0.0915067189371257 LWQLLAPF 8 Unmodified _LWQLLAPF_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|66|1|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|66|1|anti-sense MSMS UPN48_class_I_Rep_1 5 494.28790283203125 2 494.286746 986.558939 NaN NaN NaN NaN NaN NaN NaN 56.308 1 59.809 59.309 60.309 3.5014 0 0 0 0.39167 1 12103 12103 11.114 1.767 1 + 26590 27545 16642 16651 30952 30952 0.06512153662174569 LWQPIWKRL 9 Unmodified _LWQPIWKRL_ 0 0 0 REV__L1MB5_dup584|chr1:246166789-246167502:-|1.6225277170351096|0.0321792867571603|5.66|151.0|29|1|anti-sense REV__L1MB5_dup584|chr1:246166789-246167502:-|1.6225277170351096|0.0321792867571603|5.66|151.0|29|1|anti-sense MSMS UPN47_class_I_Rep_3 4 620.3718872070312 2 620.371675 1238.7288 NaN NaN NaN NaN NaN NaN NaN 88.501 1 91.894 91.394 92.394 3.3931 0 0 0 0.4007 1 22197 22197 0.52476 0 1 + 26591 26077 16643 16652 30953 30953 0.11898269664607142 LWQRRQRR 8 Unmodified _LWQRRQRR_ 0 0 0 ENST00000375067.7_1_6:32148922-32150340:-|nuORF;ENST00000469940.5_1_6:32148922-32149321:-|nuORF;nc|ENSG00000204305|Q15109-10|AGER;nc|ENSG00000204305|Q15109-7|AGER;ENSG00000204305|ENST00000375076|AGER;nc|ENSG00000204305|Q15109-6|AGER ENST00000375067.7_1_6:32148922-32150340:-|nuORF ENST00000375067.7_1_6:32148922-32150340:-|nuORF MSMS UPN46_class_I_Rep_3 1 400.2377014160156 3 400.239123 1197.69554 NaN NaN NaN NaN NaN NaN NaN 114.32 1 114.32 113.82 114.82 0 0 0 0 0.40674 1 28252 28252 1.6526 0.87609 1 26592 5514 16644 16653 30954 30954 0.1046008066525701 LWQSGVPTWS 10 Unmodified _LWQSGVPTWS_ 0 0 0 HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|69|2|sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|69|2|sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|69|2|sense MSMS UPN47_class_I_Rep_2 3 580.7904663085938 2 580.790381 1159.56621 NaN NaN NaN NaN NaN NaN NaN 30.503 1 33.985 33.485 34.485 3.4821 0 0 0 0.53105 1 5037 5037 2.9952 0.69251 1 26593 8390 16645 16654 30955 30955 -0.007191585280452273 LWQVVEDV 8 Unmodified _LWQVVEDV_ 0 0 0 REV__nc|ENSG00000167323|Q13586-2|STIM1 REV__nc|ENSG00000167323|Q13586-2|STIM1 MSMS UPN48_class_I_Rep_3 7 494.38665771484375 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 46.188 1 49.825 49.325 50.325 3.6369 0 0 0 0.40625 1 8928 8928 2.3027 0 1 + 26594 20216 16646 16655 30956 30956 0.013503651776204606 LWRGRHFF 8 Unmodified _LWRGRHFF_ 0 0 0 HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|333|3|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|333|3|anti-sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|333|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.8026123046875 2 559.80396 1117.59337 0.47858 0.00026791 -1.527 -0.00085481 -1.0484 -0.00058689 559.8030585280686 68.708 0.66751 72.217 72.037 72.705 3.5093 74 47 2 0 0 0 0.82752 1 15835 15835 14.582 0 1 189290 26595 8208 16647 16656 30957 30957 0.039274145936587956 LWRLFRRTQQN 11 Unmodified _LWRLFRRTQQN_ 0 0 0 REV__L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|118|3|sense REV__L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|118|3|sense MSMS UPN46_class_I_Rep_3 1 506.85302734375 3 506.619781 1516.83751 NaN NaN NaN NaN NaN NaN NaN 38.298 1 38.298 37.798 38.798 0 0 0 0 0.38417 1 7281 7281 0.45452 0 1 + 26596 30154 16648 16657 30958 30958 0.09976828896947154 LWRLYWLS 8 Unmodified _LWRLYWLS_ 0 0 0 MER21A_dup331|chr3:31594720-31595328:-|1.0561819825825705|0.0261588883445041|5.34|151.0|32|2|anti-sense MER21A_dup331|chr3:31594720-31595328:-|1.0561819825825705|0.0261588883445041|5.34|151.0|32|2|anti-sense MER21A_dup331|chr3:31594720-31595328:-|1.0561819825825705|0.0261588883445041|5.34|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.8154907226562 2 568.816202 1135.61785 0.071384 4.0604E-05 -1.3608 -0.00077403 -1.2894 -0.00073343 568.8152963870622 44.491 0.54939 48.186 47.869 48.419 3.6951 52 38 2 0 0 0 0.82752 1 9278 9278 8.5933 0 1 77105 26597 15855 16649 16658 30959 30959 0.055466299565068766 LWRPDHRY 8 Unmodified _LWRPDHRY_ 0 0 0 REV__nc|ENSG00000167077|Q5TIA1-6|MEI1 REV__nc|ENSG00000167077|Q5TIA1-6|MEI1 MSMS UPN47_class_I_Rep_1 2 571.7958374023438 2 571.796332 1141.57811 NaN NaN NaN NaN NaN NaN NaN 37.8 1 41.466 40.966 41.966 3.6652 0 0 0 0.40643 1 7215 7215 2.0598 0.21551 1 + 26598 20206 16650 16659 30960 30960 0.012985030057961922 LWRPTRRR 8 Unmodified _LWRPTRRR_ 0 0 0 ENST00000532245.5_1_11:57529333-57563148:+|nuORF ENST00000532245.5_1_11:57529333-57563148:+|nuORF ENST00000532245.5_1_11:57529333-57563148:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 570.848388671875 2 570.84669 1139.67883 0.15776 9.0058E-05 2.2898 0.0013071 2.4476 0.0013972 570.8480421643151 27.411 0.085379 27.411 27.378 27.463 0 7 4 2 0 0 0 0.82752 1 4075 4075 0.69038 0.16561 1 40653 26599 7299 16651 16660 30961 30961 0.11457579779289517 LWRPTRRR 8 Unmodified _LWRPTRRR_ 0 0 0 ENST00000532245.5_1_11:57529333-57563148:+|nuORF ENST00000532245.5_1_11:57529333-57563148:+|nuORF ENST00000532245.5_1_11:57529333-57563148:+|nuORF MSMS UPN46_class_I_Rep_3 1 570.8485717773438 2 570.84669 1139.67883 NaN NaN NaN NaN NaN NaN NaN 68.057 1 68.057 67.557 68.557 0 0 0 0 0.40746 1 15521 15521 0.69038 0.088878 1 26600 7299 16651 16660 30962 30962 0.11457579779289517 LWRPTRRR 8 Unmodified _LWRPTRRR_ 0 0 0 ENST00000532245.5_1_11:57529333-57563148:+|nuORF ENST00000532245.5_1_11:57529333-57563148:+|nuORF ENST00000532245.5_1_11:57529333-57563148:+|nuORF MSMS UPN47_class_I_Rep_1 2 570.8480224609375 2 570.84669 1139.67883 NaN NaN NaN NaN NaN NaN NaN 112.59 1 116.16 115.66 116.66 3.572 0 0 0 0.40746 1 27758 27758 0.69038 0 1 26601 7299 16651 16660 30963 30963 0.11457579779289517 LWRQGFYY 8 Unmodified _LWRQGFYY_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS UPN47_class_I_Rep_1 2 567.0169677734375 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 79.177 1 82.623 82.123 83.123 3.4456 0 0 0 0.40604 1 19717 19717 2.5775 0 1 26602 2662 16652 16661 30964 30964 -0.01034819974279344 LWRQGFYY 8 Unmodified _LWRQGFYY_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS UPN47_class_I_Rep_1 2 566.78173828125 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 79.382 1 82.827 82.327 83.327 3.4456 0 0 0 0.40364 1 19777 19777 5.7604 1.0044 1 26603 2662 16652 16661 30965 30965 -0.01034819974279344 LWRQGFYY 8 Unmodified _LWRQGFYY_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS UPN47_class_I_Rep_2 3 566.78173828125 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 79.274 1 82.63 82.13 83.13 3.3554 0 0 0 0.40604 1 19726 19726 2.5775 0 1 26604 2662 16652 16661 30966 30966 -0.01034819974279344 LWRQGFYY 8 Unmodified _LWRQGFYY_ 0 0 0 nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS UPN47_class_I_Rep_2 3 566.78173828125 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 79.581 1 82.937 82.437 83.437 3.3554 0 0 0 0.40604 1 19816 19816 2.5775 0 1 26605 2662 16652 16661 30967 30967 -0.01034819974279344 LWRRKGTLLFR 11 Unmodified _LWRRKGTLLFR_ 0 0 0 L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|290|2|anti-sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|292|2|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|290|2|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|290|2|anti-sense MSMS UPN48_class_I_Rep_1 5 482.6336669921875 3 482.63325 1444.87792 NaN NaN NaN NaN NaN NaN NaN 105.08 1 108.7 108.2 109.2 3.6247 0 0 0 0.38417 1 25317 25317 0.45452 0 1 26606 14292 16653 16662 30968 30968 0.1732779528736046 LWRRKGTLLFR 11 Unmodified _LWRRKGTLLFR_ 0 0 0 L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|290|2|anti-sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|292|2|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|290|2|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|290|2|anti-sense MSMS UPN48_class_I_Rep_2 6 482.6337585449219 3 482.63325 1444.87792 NaN NaN NaN NaN NaN NaN NaN 104.52 1 108.22 107.72 108.72 3.6991 0 0 0 0.38417 1 24739 24739 1.3296 0 1 26607 14292 16653 16662 30969 30969 0.1732779528736046 LWRRRGGLLF 10 Unmodified _LWRRRGGLLF_ 0 0 0 L1PA3_dup3968|chr6:6294744-6300768:-|1.427538487289879|0.4305667852692419|1.73|149.0|349|3|anti-sense L1PA3_dup3968|chr6:6294744-6300768:-|1.427538487289879|0.4305667852692419|1.73|149.0|349|3|anti-sense L1PA3_dup3968|chr6:6294744-6300768:-|1.427538487289879|0.4305667852692419|1.73|149.0|349|3|anti-sense MSMS UPN48_class_I_Rep_3 7 637.2560424804688 2 637.385648 1272.75674 NaN NaN NaN NaN NaN NaN NaN 72.118 1 75.645 75.145 76.145 3.5266 0 0 0 0.53105 1 16791 16791 3.2813 0 1 26608 14262 16654 16663 30970 30970 0.13127592644718789 LWRRRKCY 8 Unmodified _LWRRRKCY_ 0 0 0 REV__ENST00000483551.6_1_15:69082366-69082516:-|nuORF REV__ENST00000483551.6_1_15:69082366-69082516:-|nuORF MSMS UPN47_class_I_Rep_2 3 590.829833984375 2 590.829652 1179.64475 NaN NaN NaN NaN NaN NaN NaN 49.405 1 52.751 52.251 53.251 3.3465 0 0 0 0.40746 1 10768 10768 0.69038 0 1 + 26609 22585 16655 16664 30971 30971 0.062114152960702995 LWRRRPWLL 9 Unmodified _LWRRRPWLL_ 0 0 0 chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 chr12:54282932-54283079|151|11.34|0.0|20.11|+|1|HNRNPA1,HNRNPA1|2 MSMS UPN48_class_I_Rep_3 7 648.3929443359375 2 648.396016 1294.77748 NaN NaN NaN NaN NaN NaN NaN 101.69 1 105.5 105 106 3.8153 0 0 0 0.4007 1 24041 24041 0.52476 0.12405 1 26610 580 16656 16665 30972 30972 0.14188183024361933 LWRTKPPK 8 Unmodified _LWRTKPPK_ 0 0 0 ENSG00000160051|ENST00000291358|IQCC;nc|ENSG00000160051|Q4KMZ1-3|IQCC ENSG00000160051|ENST00000291358|IQCC ENSG00000160051|ENST00000291358|IQCC MSMS UPN47_class_I_Rep_1 2 513.3171997070312 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 40.645 1 44.317 43.817 44.817 3.6719 0 0 0 0.40643 1 8082 8082 2.0598 0 1 26611 3851 16657 16666 30973 30973 0.10686049676360199 LWSIKSVPSF 10 Unmodified _LWSIKSVPSF_ 0 0 0 REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|126|1|anti-sense REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|126|1|anti-sense MSMS UPN46_class_I_Rep_3 1 582.3250732421875 2 582.326599 1162.63865 NaN NaN NaN NaN NaN NaN NaN 39.708 1 39.708 39.208 40.208 0 0 0 0 0.53105 1 7652 7652 4.897 0.95262 1 + 26612 27411 16658 16667 30974 30974 0.06383175545511222 LWSKMENI 8 Unmodified _LWSKMENI_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|13|1|sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|13|1|sense MSMS UPN47_class_I_Rep_2 3 510.77166748046875 2 510.762778 1019.511 NaN NaN NaN NaN NaN NaN NaN 78.407 1 81.75 81.25 82.25 3.3428 0 0 0 0.36148 1 19475 19475 19.439 2.4967 1 + 26613 29440 16659 16668 30975 30975 0.002027116798217321 LWSLIKFTAF 10 Unmodified _LWSLIKFTAF_ 0 0 0 REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|171|3|anti-sense REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|171|3|anti-sense MSMS UPN48_class_I_Rep_3 7 613.3328247070312 2 613.352617 1224.69068 NaN NaN NaN NaN NaN NaN NaN 66.323 1 69.831 69.331 70.331 3.5077 0 0 0 0.53105 1 15055 15055 3.5965 0.60125 1 + 26614 24446 16660 16669 30976 30976 0.08732338959271146 LWTKNHYV 8 Unmodified _LWTKNHYV_ 0 0 0 Tigger3a_dup57|chr1:35969638-35970021:-|1.7293398648578542|0.0461723888380645|5.23|151.0|28|3|anti-sense Tigger3a_dup57|chr1:35969638-35970021:-|1.7293398648578542|0.0461723888380645|5.23|151.0|28|3|anti-sense Tigger3a_dup57|chr1:35969638-35970021:-|1.7293398648578542|0.0461723888380645|5.23|151.0|28|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 530.2792358398438 2 530.782359 1059.55016 0.38055 0.00020199 -0.69979 -0.00037144 -0.31924 -0.00016945 530.7808216293581 66.986 0.12661 70.177 70.088 70.214 3.1914 14 10 2 0 0 0 0.72333 1 16190 16190 2.5775 0 1 67658 26615 33364 16661 16670 30977 30977 0.022771800256805363 LWTRSITF 8 Unmodified _LWTRSITF_ 0 0 0 REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|54|3|sense REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|54|3|sense MSMS UPN48_class_I_Rep_3 7 512.2833251953125 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 102.2 1 105.98 105.48 106.48 3.776 0 0 0 0.40404 1 24152 24152 5.2307 2.6532 1 + 26616 23952 16662 16671 30978 30978 0.04454064168464811 LWTSTATLHP 10 Unmodified _LWTSTATLHP_ 0 0 0 REV__L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|46|3|sense REV__L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|46|3|sense MSMS UPN48_class_I_Rep_2 6 563.7984619140625 2 563.798206 1125.58186 NaN NaN NaN NaN NaN NaN NaN 52.817 1 56.427 55.927 56.927 3.6098 0 0 0 0.53105 1 11010 11010 3.2813 0.28607 1 + 26617 27235 16663 16672 30979 30979 0.024091279889944417 LWVEGCLK 8 Unmodified _LWVEGCLK_ 0 0 0 REV__nc|ENSG00000137501|Q9HCH5-12|SYTL2 REV__nc|ENSG00000137501|Q9HCH5-12|SYTL2 MSMS UPN46_class_I_Rep_3 1 474.28216552734375 2 474.254588 946.494624 NaN NaN NaN NaN NaN NaN NaN 29.768 1 29.768 29.268 30.268 0 0 0 0 0.40604 1 4759 4759 2.5775 0.51773 1 + 26618 19235 16664 16673 30980 30980 0.019236305137269483 LWVGLGVLV 9 Unmodified _LWVGLGVLV_ 0 0 0 nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 nc|ENSG00000157637|Q9HBR0-3|SLC38A10 MSMS UPN48_class_I_Rep_2 6 478.30279541015625 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 66.242 1 69.728 69.228 70.228 3.4866 0 0 0 0.39326 1 15119 15119 2.3027 0 1 26619 3773 16665 16674 30981 30981 0.11112726696296704 LWVHHRTGT 9 Unmodified _LWVHHRTGT_ 0 0 0 REV__AluSz_dup64952|chr11:117066058-117066367:-|1.7272159218532148|0.0357729163938345|5.59|151.0|14|1|anti-sense REV__AluSz_dup64952|chr11:117066058-117066367:-|1.7272159218532148|0.0357729163938345|5.59|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 553.7982788085938 2 553.796332 1105.57811 NaN NaN NaN NaN NaN NaN NaN 32.174 1 35.887 35.387 36.387 3.7131 0 0 0 0.39326 1 5502 5502 2.3027 1.5091 1 + 26620 17206 16666 16675 30982 30982 0.02954503005821607 LWVIVFSQLF 10 Unmodified _LWVIVFSQLF_ 0 0 0 REV__L1ME3B_dup4126|chr9:40104722-40105121:-|1.118673342909177|0.2496622665294853|2.16|150.0|25|3|anti-sense REV__L1ME3B_dup4126|chr9:40104722-40105121:-|1.118673342909177|0.2496622665294853|2.16|150.0|25|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 417.9205627441406 3 417.909387 1250.70633 0.01248 5.2156E-06 0.68353 0.00028565 0.69601 0.00029087 417.9094639642709 42.874 0.11557 46.632 46.6 46.716 3.7579 12 8 2 0 0 0 0.84575 1 7982 7982 2.086 0 1 33394 + 26621 28058 16667 16676 30983 30983 0.09100625476344248 LWVRWQRRRLR 11 Unmodified _LWVRWQRRRLR_ 0 0 0 REV__L1MEi_dup3687|chr11:73060575-73060956:+|1.3932613387259438|0.0079570613643042|7.45|151.0|4|1|sense REV__L1MEi_dup3687|chr11:73060575-73060956:+|1.3932613387259438|0.0079570613643042|7.45|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 542.3661499023438 3 542.330565 1623.96987 0.533 0.00028906 1.0259 0.00055637 1.5589 0.00084544 542.3312354731745 108.17 0.38153 111.8 111.67 112.05 3.6355 48 38 2 0 0 0 22.551 1 26520 26520 0.094841 0.011491 1 2531500 + 26622 28804 16668 16677 30984 30984 0.18283898424374456 LWVTARIS 8 Unmodified _LWVTARIS_ 0 0 0 REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|46|3|sense REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|46|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 473.2793884277344 2 473.279452 944.544351 0.026033 1.2321E-05 0.81165 0.00038414 0.83769 0.00039646 473.2795526950366 52.435 0.67522 55.993 55.697 56.372 3.5585 72 52 2 0 0 0 0.82752 2 11620 11620;11655 13.042 0 1 263000 + 26623 31927 16669 16678 30985;30986 30985 0.06986081514037323 LWVTARIS 8 Unmodified _LWVTARIS_ 0 0 0 REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|46|3|sense REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|46|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.2793273925781 2 473.279452 944.544351 0.16995 8.0434E-05 0.81559 0.000386 0.98554 0.00046644 473.2796541687933 52.685 0.58634 56.019 55.837 56.424 3.3332 70 44 2 0 0 0 0.82752 1 11750 11750 17.113 0 1 261880 + 26624 31927 16669 16678 30987 30987 0.06986081514037323 LWVTARIS 8 Unmodified _LWVTARIS_ 0 0 0 REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|46|3|sense REV__MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|46|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 473.2797546386719 2 473.279452 944.544351 0.064957 3.0743E-05 0.67156 0.00031783 0.73651 0.00034858 473.27954944981593 52.908 0.86106 56.103 55.803 56.664 3.1948 81 56 2 0 0 0 0.82752 2 11862 11862;11906 13.906 0 1 202320 + 26625 31927 16669 16678 30988;30989 30988 0.06986081514037323 LWVTSFHGW 9 Unmodified _LWVTSFHGW_ 0 0 0 REV__nc|ENSG00000184343|Q9UPE1-2|SRPK3 REV__nc|ENSG00000184343|Q9UPE1-2|SRPK3 MSMS UPN47_class_I_Rep_3 4 566.7826538085938 2 566.782359 1131.55016 NaN NaN NaN NaN NaN NaN NaN 21.428 1 24.778 24.278 25.278 3.3496 0 0 0 0.40038 1 2396 2396 0.6015 0 1 + 26626 20815 16670 16679 30990 30990 -0.01034819974279344 LWVVCNFQR 9 Unmodified _LWVVCNFQR_ 0 0 0 chr12:124867137-124868850|123|14.82|0.14|6.74|-|2|TE_info:L2a,L2a_dup127845,L2,LINE,donor,+,124868850,124869153|SCARB1,None|2 chr12:124867137-124868850|123|14.82|0.14|6.74|-|2|TE_info:L2a,L2a_dup127845,L2,LINE,donor,+,124868850,124869153|SCARB1,None|2 chr12:124867137-124868850|123|14.82|0.14|6.74|-|2|TE_info:L2a,L2a_dup127845,L2,LINE,donor,+,124868850,124869153|SCARB1,None|2 MSMS UPN48_class_I_Rep_3 7 582.8046264648438 2 582.802768 1163.59098 NaN NaN NaN NaN NaN NaN NaN 27.908 1 31.663 31.163 32.163 3.7555 0 0 0 0.39518 1 3726 3726 1.8442 0 1 26627 578 16671 16680 30991 30991 0.015731980736745754 LWVVHRLQ 8 Unmodified _LWVVHRLQ_ 0 0 0 ENSG00000167522.16,ANKRD11,chr16,-,I10.1,89370741,89372853|101|10.27|1|intron ENSG00000167522.16,ANKRD11,chr16,-,I10.1,89370741,89372853|101|10.27|1|intron ENSG00000167522.16,ANKRD11,chr16,-,I10.1,89370741,89372853|101|10.27|1|intron MSMS UPN47_class_I_Rep_1 2 525.814208984375 2 525.813993 1049.61343 NaN NaN NaN NaN NaN NaN NaN 113.42 1 117 116.5 117.5 3.572 0 0 0 0.40738 1 27983 27983 0.79363 0 1 26628 4304 16672 16681 30992 30992 0.09061165533626081 LWWFDVWIV 9 Unmodified _LWWFDVWIV_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 632.3327026367188 2 632.331685 1262.64882 0.56477 0.00035712 1.0657 0.00067388 1.6305 0.001031 632.3323034060062 58.91 0.58465 62.397 62.091 62.676 3.487 63 37 2 0 0 0 0.23311 3 12856 12856;12896;12980 18.135 1.0221 1 172400 26629 12591 16673 16682 30993;30994;30995 30993 0.027997832707569614 LWWFDVWIV 9 Unmodified _LWWFDVWIV_ 0 0 0 L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense L1ME3_dup3430|chr6:107892627-107893107:+|1.6004921400619976|0.1106457311551332|3.85|151.0|19|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 632.3326416015625 2 632.331685 1262.64882 0.56708 0.00035858 1.1629 0.00073531 1.7299 0.0010939 632.3321458154447 58.719 0.62357 62.242 61.92 62.543 3.5231 65 41 2 0 0 0 0.23311 2 12743 12743;12781 18.135 1.0221 1 158510 26630 12591 16673 16682 30996;30997 30996 0.027997832707569614 LWWLILIA 8 Unmodified _LWWLILIA_ 0 0 0 PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|107|3|anti-sense PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|107|3|anti-sense PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|107|3|anti-sense MSMS UPN47_class_I_Rep_3 4 514.321044921875 2 514.320589 1026.62662 NaN NaN NaN NaN NaN NaN NaN 44.49 1 47.734 47.234 48.234 3.2441 0 0 0 0.40738 1 9335 9335 0.79363 0 1 26631 16892 16674 16683 30998 30998 0.11437603593003587 LWWLVFYIK 9 Unmodified _LWWLVFYIK_ 0 0 0 REV__ENSG00000162341|ENST00000294309|TPCN2 REV__ENSG00000162341|ENST00000294309|TPCN2 MSMS UPN47_class_I_Rep_3 4 633.884521484375 2 634.365527 1266.7165 NaN NaN NaN NaN NaN NaN NaN 73.498 1 76.735 76.235 77.235 3.2363 0 0 0 0.40038 1 18154 18154 0.6015 0.076735 1 + 26632 19920 16675 16684 30999 30999 0.0938123320156592 LWWLWEKT 8 Unmodified _LWWLWEKT_ 0 0 0 L1MA1_dup1236|chr5:43460381-43462827:+|1.7541986688915605|0.2092975406299803|3.07|151.0|80|3|sense L1MA1_dup1236|chr5:43460381-43462827:+|1.7541986688915605|0.2092975406299803|3.07|151.0|80|3|sense L1MA1_dup1236|chr5:43460381-43462827:+|1.7541986688915605|0.2092975406299803|3.07|151.0|80|3|sense MSMS UPN48_class_I_Rep_2 6 581.3107299804688 2 581.30821 1160.60187 NaN NaN NaN NaN NaN NaN NaN 46.3 1 50.049 49.549 50.549 3.7494 0 0 0 0.40625 1 9032 9032 2.3027 0.24298 1 26633 9257 16676 16685 31000 31000 0.027989237195924943 LWWQPWWWKLQ 11 Unmodified _LWWQPWWWKLQ_ 0 0 0 chr12:54282820-54283827|151|57.88|0.0|22.46|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|151|57.88|0.0|22.46|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|151|57.88|0.0|22.46|+|1|HNRNPA1,HNRNPA1|1 MSMS UPN46_class_I_Rep_3 1 552.9552001953125 3 552.95399 1655.84014 NaN NaN NaN NaN NaN NaN NaN 86.543 1 86.543 86.043 87.043 0 0 0 0 0.38417 1 20690 20690 0.08335 0.08335 1 26634 579 16677 16686 31001 31001 0.03845284301883112 LWYCFFFS 8 Unmodified _LWYCFFFS_ 0 0 0 REV__L1MB3_dup12148|chr12:120881495-120881957:+|1.7149340500939012|0.0068934845007139|7.96|151.0|19|1|anti-sense REV__L1MB3_dup12148|chr12:120881495-120881957:+|1.7149340500939012|0.0068934845007139|7.96|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 557.2332763671875 2 556.749139 1111.48372 NaN NaN NaN NaN NaN NaN NaN 21.612 1 25.326 24.826 25.826 3.7144 0 0 0 0.40738 1 2062 2062 0.79363 0 1 + 26635 25807 16678 16687 31002 31002 -0.0675577186054852 LWYITVLVN 9 Unmodified _LWYITVLVN_ 0 0 0 REV__nc|ENSG00000064042|Q9UPQ0-10|LIMCH1 REV__nc|ENSG00000064042|Q9UPQ0-10|LIMCH1 MULTI-MSMS UPN47_class_I_Rep_3 4 560.8228759765625 2 560.823692 1119.63283 -0.3478 -0.00019505 -0.53315 -0.000299 -0.88095 -0.00049406 560.8232932836396 19.336 0.88772 22.688 22.258 23.145 3.3514 167 89 2 0 0 0 0.46434 1 1751 1751 4.3292 0 1 91818 + 26636 31938 16679 16688 31003 31003 0.07780077033839916 LWYIYKYIKKK 11 Unmodified _LWYIYKYIKKK_ 0 0 0 L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 515.9783325195312 3 515.977912 1544.91191 0.3236 0.00016697 0.50165 0.00025884 0.82525 0.00042581 516.3125987091499 106.74 0.24596 106.74 106.57 106.81 0 43 29 2 0 0 0 0.68478 1 26010 26010 0.094841 0 1 300600 26637 10080 16680 16689 31004 31004 0.1612477893572759 LWYIYKYIKKK 11 Unmodified _LWYIYKYIKKK_ 0 0 0 L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 515.9785766601562 3 515.977912 1544.91191 NaN NaN NaN NaN NaN NaN NaN 106.93 1 106.93 106.43 107.43 0 0 0 0 0.38417 1 26085 26085 0.094841 0 1 26638 10080 16680 16689 31005 31005 0.1612477893572759 LWYIYKYIKKK 11 Unmodified _LWYIYKYIKKK_ 0 0 0 L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.9785766601562 3 515.977912 1544.91191 0.34451 0.00017776 0.70341 0.00036294 1.0479 0.0005407 516.312762635817 102.53 0.41893 106.24 105.96 106.38 3.7108 80 60 2 0 0 0 0.68478 1 24230 24230 0.094841 0 1 299120 26639 10080 16680 16689 31006 31006 0.1612477893572759 LWYLKFVF 8 Unmodified _LWYLKFVF_ 0 0 0 REV__LTR49-int_dup1384|chr10:93019282-93020669:+|2.1471998793504548|0.0420836374162046|5.67|151.0|86|2|anti-sense REV__LTR49-int_dup1384|chr10:93019282-93020669:+|2.1471998793504548|0.0420836374162046|5.67|151.0|86|2|anti-sense MSMS UPN48_class_I_Rep_2 6 558.3200073242188 2 558.318046 1114.62154 NaN NaN NaN NaN NaN NaN NaN 29.653 1 33.285 32.785 33.785 3.6316 0 0 0 0.40738 1 4241 4241 0.79363 0 1 + 26640 30948 16681 16690 31007 31007 0.06881299730389401 LWYPFEYR 8 Unmodified _LWYPFEYR_ 0 0 0 REV__L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|86|3|anti-sense REV__L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|86|3|anti-sense MSMS UPN47_class_I_Rep_3 4 587.2907104492188 2 587.290017 1172.56548 NaN NaN NaN NaN NaN NaN NaN 67.666 1 70.858 70.358 71.358 3.1914 0 0 0 0.40738 1 16397 16397 0.79363 0 1 + 26641 27309 16682 16691 31008 31008 -0.013899531771130569 LWYVYSFF 8 Unmodified _LWYVYSFF_ 0 0 0 REV__L1P3_dup1482|chr7:32500001-32500970:-|1.8928388635954712|0.0454977852751341|5.38|151.0|69|3|anti-sense REV__L1P3_dup1482|chr7:32500001-32500970:-|1.8928388635954712|0.0454977852751341|5.38|151.0|69|3|anti-sense MSMS UPN47_class_I_Rep_2 3 562.7771606445312 2 562.776211 1123.53787 NaN NaN NaN NaN NaN NaN NaN 29.61 1 33.102 32.602 33.602 3.4923 0 0 0 0.40364 1 4766 4766 5.7604 1.0044 1 + 26642 28874 16683 16692 31009 31009 -0.01895856437340626 LWYYFRLL 8 Unmodified _LWYYFRLL_ 0 0 0 REV__ENSG00000102384|ENST00000682095|CENPI REV__ENSG00000102384|ENST00000682095|CENPI MSMS UPN47_class_I_Rep_2 3 587.3272094726562 2 587.326402 1172.63825 NaN NaN NaN NaN NaN NaN NaN 63.551 1 66.806 66.306 67.306 3.2558 0 0 0 0.40746 1 15085 15085 0.69038 0 1 + 26643 18194 16684 16693 31010 31010 0.05883800616311419 LYAAFSYTF 9 Unmodified _LYAAFSYTF_ 0 0 0 REV__MER1A_dup2241|chr12:9686999-9687530:-|1.6354502106590707|0.3699116627699793|2.14|151.0|35|2|anti-sense REV__MER1A_dup2241|chr12:9686999-9687530:-|1.6354502106590707|0.3699116627699793|2.14|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_3 7 541.7607421875 2 541.7633 1081.51205 NaN NaN NaN NaN NaN NaN NaN 59.849 1 63.366 62.866 63.866 3.5169 0 0 0 0.2088 1 13098 13098 15.847 1.0089 1 + 26644 31122 16685 16694 31011 31011 -0.02544750679635399 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4 ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000460616.5_1_X:153061851-153063636:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 549.2854614257812 2 549.284931 1096.55531 0.47009 0.00025822 -0.086776 -4.7665E-05 0.38332 0.00021055 549.2847341890925 44.979 0.34566 48.495 48.289 48.635 3.5162 32 24 2 0 0 0 0.3776 2 8632 8611;8632 21.537 8.0595 1 107270 26645 4901 16686 16695 31012;31013 31013 0.010894390976773138 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4 ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000460616.5_1_X:153061851-153063636:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.2837524414062 2 549.284931 1096.55531 0.40859 0.00022443 0.10758 5.9092E-05 0.51617 0.00028353 549.2848180347795 44.651 0.51394 48.413 48.128 48.642 3.7617 44 35 2 0 0 0 0.46742 1 8544 8544 14.405 2.1647 1 129040 26646 4901 16686 16695 31014 31014 0.010894390976773138 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4 ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000460616.5_1_X:153061851-153063636:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 549.2844848632812 2 549.284931 1096.55531 0.3479 0.0001911 -0.049095 -2.6967E-05 0.29881 0.00016413 549.2848882454424 44.771 0.5603 48.408 48.239 48.8 3.6372 57 37 2 0 0 0 0.21204 2 8519 8466;8519 47.594 13.193 1 93595 26647 4901 16686 16695 31015;31016 31016 0.010894390976773138 LYAFKNRI 8 Unmodified _LYAFKNRI_ 0 0 0 REV__HAL1_dup5195|chr3:142316914-142317379:-|1.2442878518381988|0.120082275426413|3.37|151.0|22|1|anti-sense REV__HAL1_dup5195|chr3:142316914-142317379:-|1.2442878518381988|0.120082275426413|3.37|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_3 4 512.8004760742188 2 512.800552 1023.58655 NaN NaN NaN NaN NaN NaN NaN 24.188 1 27.539 27.039 28.039 3.3509 0 0 0 0.40738 1 3205 3205 0.79363 0 1 + 26648 23429 16687 16696 31017 31017 0.0757005692240682 LYAHKREN 8 Unmodified _LYAHKREN_ 0 0 0 L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|165|3|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|165|3|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|165|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.7755126953125 2 515.775065 1029.53558 0.29054 0.00014985 0.49534 0.00025548 0.78587 0.00040533 515.7753267087662 72.118 0.15668 75.591 75.557 75.714 3.4732 16 13 2 0 0 0 0.82752 1 16928 16928 15.847 0 1 77801 26649 9795 16688 16697 31018 31018 0.021991078775727146 LYAIPCFFAI 10 Unmodified _LYAIPCFFAI_ 0 0 0 HAL1_dup2142|chr2:26049830-26050512:-|1.9077617826790445|0.0178164300519397|6.74|150.0|38|2|anti-sense HAL1_dup2142|chr2:26049830-26050512:-|1.9077617826790445|0.0178164300519397|6.74|150.0|38|2|anti-sense HAL1_dup2142|chr2:26049830-26050512:-|1.9077617826790445|0.0178164300519397|6.74|150.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.2929077148438 2 579.306821 1156.59909 0.50747 0.00029398 2.682 0.0015537 3.1895 0.0018477 579.3082460671968 63.848 0.099316 67.356 67.305 67.405 3.5083 6 5 2 0 0 0 0.55873 1 14309 14309 4.3292 1.7518 1 77663 26650 7871 16689 16698 31019 31019 0.027053322704432503 LYALAYGN 8 Unmodified _LYALAYGN_ 0 0 0 REV__L1ME3G_dup16225|chr22:20761595-20761848:+|1.043516876911876|0.2676766279322838|1.96|151.0|17|3|anti-sense REV__L1ME3G_dup16225|chr22:20761595-20761848:+|1.043516876911876|0.2676766279322838|1.96|151.0|17|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 442.7296447753906 2 442.729261 883.443968 0.1651 7.3093E-05 0.19183 8.4929E-05 0.35693 0.00015802 442.7292175437131 100.01 1.2046 103.8 103.1 104.3 3.7942 232 161 2 0 0 0 0.82752 1 24778 24778 2.5775 0 1 395110 + 26651 28186 16690 16699 31020 31020 -0.002415755396214081 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(55)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_1 5 586.7923583984375 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.939 1 55.462 54.962 55.962 3.5227 0 0 0 0.014348 1 10761 10761 55.235 16.62 1 26652 682 16691 16700 31021 31021 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(50)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_1 5 586.791259765625 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 52.275 1 55.798 55.298 56.298 3.5227 0 0 0 0.026555 1 10858 10858 49.527 16.082 1 26653 682 16691 16700 31022 31022 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(57)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_2 6 586.792236328125 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.558 1 55.226 54.726 55.726 3.6679 0 0 0 0.0080958 1 10639 10639 57.249 17.01 1 26654 682 16691 16700 31023 31023 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(57)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_2 6 586.7904663085938 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.654 1 55.293 54.793 55.793 3.639 0 0 0 0.0080958 1 10667 10667 57.249 17.01 1 26655 682 16691 16700 31024 31024 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(81)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_2 6 586.792236328125 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.68 1 55.319 54.819 55.819 3.639 0 0 0 2.9692E-09 1 10675 10675 80.676 27.272 1 26656 682 16691 16700 31025 31025 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(65)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_2 6 586.792236328125 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.799 1 55.438 54.938 55.938 3.639 0 0 0 0.00028483 1 10708 10708 65.474 17.879 1 26657 682 16691 16700 31026 31026 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(50)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_3 7 586.791748046875 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.723 1 55.333 54.833 55.833 3.6105 0 0 0 0.026555 1 10625 10625 49.527 16.082 1 26658 682 16691 16700 31027 31027 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(63)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_3 7 586.7919311523438 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.849 1 55.447 54.947 55.947 3.5979 0 0 0 0.00073399 1 10662 10662 63.227 17.488 1 26659 682 16691 16700 31028 31028 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(42)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_3 7 586.7919921875 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 51.967 1 55.565 55.065 56.065 3.5979 0 0 0 0.035625 1 10695 10695 42.312 8.8676 1 26660 682 16691 16700 31029 31029 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(65)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_3 7 586.7918701171875 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 52.139 1 55.737 55.237 56.237 3.5979 0 0 0 0.00028483 1 10747 10747 65.474 17.879 1 26661 682 16691 16700 31030 31030 1 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(50)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS UPN48_class_I_Rep_3 7 586.7923583984375 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 52.272 1 55.87 55.37 56.37 3.5979 0 0 0 0.026555 1 10784 10784 49.527 9.288 1 26662 682 16691 16700 31031 31031 1 -0.009342317456912497 LYAVAGTVLF 10 Unmodified _LYAVAGTVLF_ 0 0 0 REV__ENSG00000153230|ENST00000283225|OR14K1 REV__ENSG00000153230|ENST00000283225|OR14K1 MULTI-MSMS UPN48_class_I_Rep_2 6 527.3026733398438 2 527.302593 1052.59063 0.40339 0.00021271 -0.010554 -5.5652E-06 0.39284 0.00020714 527.3024440350534 85.529 0.14787 89.235 89.182 89.33 3.7058 24 17 2 0 0 0 0.46161 1 20347 20347 14.838 0 1 105280 + 26663 19707 16692 16701 31032 31032 0.06644101625443 LYAVLVHTG 9 Unmodified _LYAVLVHTG_ 0 0 0 ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346.11,USP42,chr7,+,I7.1,6135952,6139091|24|5.38|1|intron;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF MSMS UPN48_class_I_Rep_1 5 486.7792663574219 2 486.779285 971.544017 NaN NaN NaN NaN NaN NaN NaN 70.366 1 73.826 73.326 74.326 3.4598 0 0 0 0.1724 1 16393 16393 18.135 1.0484 1 26664 1784 16693 16702 31033 31033 0.05710661794205407 LYAVQVYSLG 10 Unmodified _LYAVQVYSLG_ 0 0 0 Tigger3b_dup2144|chr5:76866385-76866847:+|4.26008437265522|0.004501869569586|9.89|149.0|3|1|sense Tigger3b_dup2144|chr5:76866385-76866847:+|4.26008437265522|0.004501869569586|9.89|149.0|3|1|sense Tigger3b_dup2144|chr5:76866385-76866847:+|4.26008437265522|0.004501869569586|9.89|149.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 556.8028564453125 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 58.847 1 62.013 61.513 62.513 3.1658 0 0 0 0.53105 1 13705 13705 6.7232 0.36906 1 26665 33373 16694 16703 31034 31034 0.040028962745282115 LYAYWIVV 8 Unmodified _LYAYWIVV_ 0 0 0 ENST00000530075.1_1_6:1960095-1961062:-|nuORF;nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS;ENSG00000112699.11,GMDS,chr6,-,I11.1,1717644,1726415|28|9.46|2|intron ENST00000530075.1_1_6:1960095-1961062:-|nuORF ENST00000530075.1_1_6:1960095-1961062:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 513.7862548828125 2 513.786579 1025.5586 0.18036 9.2664E-05 -1.1796 -0.00060606 -0.99924 -0.00051339 513.7860969280915 53.014 0.6499 56.572 56.262 56.912 3.5585 63 38 2 0 0 0 0.72333 1 11833 11833 17.087 17.087 1 108850 26666 2023 16695 16704 31035 31035 0.04684733942326602 LYCKWFFF 8 Unmodified _LYCKWFFF_ 0 0 0 REV__L1MB7_dup2576|chr2:97746692-97747756:+|1.4073152963263045|0.0775616731573543|4.18|151.0|68|3|anti-sense REV__L1MB7_dup2576|chr2:97746692-97747756:+|1.4073152963263045|0.0775616731573543|4.18|151.0|68|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 577.2808837890625 2 577.280606 1152.54666 0.44905 0.00025923 0.29015 0.0001675 0.7392 0.00042673 577.2808528453245 70.665 0.60354 74.125 73.836 74.44 3.4598 84 63 2 0 0 0 0.82752 1 16518 16518 9.3474 0 1 179200 + 26667 26237 16696 16705 31036 31036 -0.023512060725124684 LYCLEIKKHP 10 Unmodified _LYCLEIKKHP_ 0 0 0 L1MEd_dup16586|chr12:132000059-132000668:-|1.02848948483639|0.0675254384742277|3.93|150.0|15|2|sense L1MEd_dup16586|chr12:132000059-132000668:-|1.02848948483639|0.0675254384742277|3.93|150.0|15|2|sense L1MEd_dup16586|chr12:132000059-132000668:-|1.02848948483639|0.0675254384742277|3.93|150.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 622.3482055664062 2 622.347009 1242.67946 NaN NaN NaN NaN NaN NaN NaN 41.854 1 41.854 41.354 42.354 0 0 0 0 0.53105 1 8239 8239 1.6526 0 1 26668 13181 16697 16706 31037 31037 0.06783193593491887 LYCLYLSIK 9 Unmodified _LYCLYLSIK_ 0 0 0 REV__L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|50|2|anti-sense REV__L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 558.3131713867188 2 558.312103 1114.60965 NaN NaN NaN NaN NaN NaN NaN 44.464 1 48.226 47.726 48.726 3.7617 0 0 0 0.39428 1 8476 8476 2.0598 0 1 + 26669 24509 16698 16707 31038 31038 0.056933149248834525 LYCMRRLT 8 Unmodified _LYCMRRLT_ 0 0 0 REV__ENSG00000181789|ENST00000314797|COPG1 REV__ENSG00000181789|ENST00000314797|COPG1 MSMS UPN47_class_I_Rep_2 3 528.2796630859375 2 528.278072 1054.54159 NaN NaN NaN NaN NaN NaN NaN 27.933 1 31.432 30.932 31.932 3.4986 0 0 0 0.40738 1 4264 4264 0.79363 0 1 + 26670 20739 16699 16708 31039 31039 0.01650166793228891 LYCPSTLYAD 10 Unmodified _LYCPSTLYAD_ 0 0 0 REV__MLT1H1_dup1871|chr9:62812792-62813196:-|1.6596872332865795|0.2853126981021218|2.54|150.0|26|3|anti-sense REV__MLT1H1_dup1871|chr9:62812792-62813196:-|1.6596872332865795|0.2853126981021218|2.54|150.0|26|3|anti-sense MSMS UPN48_class_I_Rep_3 7 573.2637329101562 2 573.262807 1144.51106 NaN NaN NaN NaN NaN NaN NaN 29.21 1 32.938 32.438 33.438 3.7286 0 0 0 0.53105 1 4070 4070 1.4819 0.15237 1 + 26671 31712 16700 16709 31040 31040 -0.05541333110841151 LYDCICMK 8 Unmodified _LYDCICMK_ 0 0 0 L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense;L1MB8_dup7721|chr9:4734724-4735084:+|1.2584295962685943|0.3044701038192758|2.05|150.0|14|3|sense L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 494.7189025878906 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 24.018 1 27.748 27.248 28.248 3.7298 0 0 0 0.40404 1 3069 3069 5.2307 0 1 26672 10867 16701 16710 31041 31041 -0.0714336822666155 LYDCICMK 8 Unmodified _LYDCICMK_ 0 0 0 L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense;L1MB8_dup7721|chr9:4734724-4735084:+|1.2584295962685943|0.3044701038192758|2.05|150.0|14|3|sense L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense MSMS UPN47_class_I_Rep_3 4 494.7186279296875 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 29.635 1 32.959 32.459 33.459 3.3235 0 0 0 0.40604 1 4818 4818 2.5775 0 1 26673 10867 16701 16710 31042 31042 -0.0714336822666155 LYDDENLLLK 10 Unmodified _LYDDENLLLK_ 0 0 0 REV__ENSG00000135999|ENST00000258484|EPC2 REV__ENSG00000135999|ENST00000258484|EPC2 MSMS UPN48_class_I_Rep_1 5 618.330322265625 2 618.329536 1234.64452 NaN NaN NaN NaN NaN NaN NaN 45.728 1 49.244 48.744 49.744 3.5162 0 0 0 0.53105 1 8850 8850 6.2058 1.4498 1 + 26674 19167 16702 16711 31043 31043 0.036582292665116256 LYDIDDAF 8 Unmodified _LYDIDDAF_ 0 0 0 REV__L1ME1_dup2841|chr2:24518065-24519179:+|3.076683611967824|0.0314654226894617|6.61|151.0|37|3|sense REV__L1ME1_dup2841|chr2:24518065-24519179:+|3.076683611967824|0.0314654226894617|6.61|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 486.2210998535156 2 486.221465 970.428378 NaN NaN NaN NaN NaN NaN NaN 71.277 1 71.277 70.777 71.777 0 0 0 0 0.38221 1 16411 16411 14.582 0 1 + 26675 27732 16703 16712 31044 31044 -0.05801906847329974 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_1 5 569.8290405273438 2 569.828975 1137.6434 0.43891 0.00025011 -0.08938 -5.0931E-05 0.34954 0.00019918 569.8288622746381 73.507 0.46774 76.988 76.604 77.072 3.4812 127 42 4 0 0 0 0.0063213 4 17283 17228;17247;17283;17320 125.53 39.888 1 1313800 26676 1383 16704 16713 31045;31046;31047;31048 31047 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_1 5 569.8292846679688 2 569.828975 1137.6434 0.43844 0.00024984 0.0010684 6.0879E-07 0.43951 0.00025045 569.8289157225946 73.695 0.1708 77.177 77.072 77.243 3.4812 68 18 4 0 0 0 4.4599E-05 2 17389 17355;17389 155.03 26.828 1 1973900 26677 1383 16704 16713 31049;31050 31050 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_1 5 569.829345703125 2 569.828975 1137.6434 0.43819 0.00024969 0.021756 1.2397E-05 0.45994 0.00026209 569.8289351053253 73.843 0.28578 77.324 77.233 77.519 3.4812 60 26 4 0 0 0 0.0029438 1 17427 17427 149.91 53.803 1 580050 26678 1383 16704 16713 31051 31051 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_1 5 569.8291015625 2 569.828975 1137.6434 0.43778 0.00024946 -0.18273 -0.00010412 0.25505 0.00014534 569.828764921292 74.024 0.13279 77.505 77.386 77.519 3.4812 20 11 2 0 0 0 0.033731 1 17465 17465 55.503 17.327 1 213220 26679 1383 16704 16713 31052 31052 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_1 5 569.8294677734375 2 569.828975 1137.6434 0.43753 0.00024932 0.4266 0.00024309 0.86413 0.00049241 569.8293425690017 74.13 0.10911 77.62 77.564 77.673 3.49 12 8 2 0 0 0 0.15547 1 17500 17500 24.991 8.8419 1 98183 26680 1383 16704 16713 31053 31053 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_2 6 569.8291625976562 2 569.828975 1137.6434 0.47823 0.00027251 -0.083627 -4.7653E-05 0.3946 0.00022486 569.8288726137896 73.397 1.2032 76.974 76.53 77.733 3.5779 316 132 4 0 0 0 2.0551E-28 10 17220 17124;17150;17184;17220;17253;17292;17323;17356;17381;17401 223.06 64.857 1 1577400 26681 1383 16704 16713 31054;31055;31056;31057;31058;31059;31060;31061;31062;31063 31057 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS UPN48_class_I_Rep_3 7 569.8291625976562 2 569.828975 1137.6434 0.51221 0.00029187 -0.14471 -8.2462E-05 0.36749 0.00020941 569.8287944129012 73.277 0.46185 76.815 76.533 76.994 3.5373 80 46 3 0 0 0 0.029742 1 17120 17120 57.249 17.299 1 420520 26682 1383 16704 16713 31064 31064 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MSMS UPN48_class_I_Rep_3 7 569.8286743164062 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.052 1 76.589 76.089 77.089 3.5373 0 0 0 0.029372 1 17071 17071 45.74 12.954 1 26683 1383 16704 16713 31065 31065 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MSMS UPN48_class_I_Rep_3 7 569.829833984375 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.071 1 76.609 76.109 77.109 3.5373 0 0 0 0.075414 1 17077 17077 29.841 7.1043 1 26684 1383 16704 16713 31066 31066 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MSMS UPN48_class_I_Rep_3 7 569.8291625976562 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.342 1 76.879 76.379 77.379 3.5373 0 0 0 1.3928E-06 1 17154 17154 70.332 24.632 1 26685 1383 16704 16713 31067 31067 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MSMS UPN48_class_I_Rep_3 7 569.8292236328125 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.463 1 77 76.5 77.5 3.5373 0 0 0 5.5612E-09 1 17190 17190 79.596 25.764 1 26686 1383 16704 16713 31068 31068 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MSMS UPN48_class_I_Rep_3 7 569.82861328125 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.582 1 77.133 76.633 77.633 3.5505 0 0 0 0.001059 1 17224 17224 61.602 21.652 1 26687 1383 16704 16713 31069 31069 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MSMS UPN48_class_I_Rep_3 7 569.829345703125 2 569.828975 1137.6434 NaN NaN NaN NaN NaN NaN NaN 73.705 1 77.256 76.756 77.756 3.5505 0 0 0 0.040938 1 17257 17257 40.239 12.61 1 26688 1383 16704 16713 31070 31070 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 569.828975 1137.6434 0.51088 0.00029111 -1.0568 -0.00060218 -0.54589 -0.00031106 569.8278682755273 73.755 0.036331 77.306 77.279 77.316 3.5505 -0.009263 -0.0012056 NaN 149.91 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 47418 26689 1383 16704 16713 0.08008059688290814 LYDKPVHV 8 Unmodified _LYDKPVHV_ 0 0 0 L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|25|3|sense L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|25|3|sense L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 485.77197265625 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 22.374 1 26.02 25.52 26.52 3.6459 0 0 0 0.40738 1 2274 2274 0.79363 0.10326 1 26690 13740 16705 16714 31071 31071 0.0423837527713431 LYDPLGRGQI 10 Unmodified _LYDPLGRGQI_ 0 0 0 REV__ENST00000220509.9_1_15:41186745-41186790:+|nuORF REV__ENST00000220509.9_1_15:41186745-41186790:+|nuORF MSMS UPN47_class_I_Rep_1 2 566.3130493164062 2 566.31148 1130.60841 NaN NaN NaN NaN NaN NaN NaN 63.089 1 66.449 65.949 66.949 3.3595 0 0 0 0.53105 1 14907 14907 4.897 0.141 1 + 26691 21482 16706 16715 31072 31072 0.04832816880343671 LYEEERFK 8 Unmodified _LYEEERFK_ 0 0 0 L1M5_dup41941|chr13:77183846-77184718:-|1.5036606618813502|0.0708263016163624|4.41|151.0|8|1|sense L1M5_dup41941|chr13:77183846-77184718:-|1.5036606618813502|0.0708263016163624|4.41|151.0|8|1|sense L1M5_dup41941|chr13:77183846-77184718:-|1.5036606618813502|0.0708263016163624|4.41|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.2843627929688 2 557.282389 1112.55022 0.4861 0.0002709 -0.11149 -6.2129E-05 0.37462 0.00020877 557.2824042243473 42.614 0.59118 46.122 45.893 46.485 3.5079 70 45 2 0 0 0 0.82752 1 7937 7937 4.756 0 1 126120 26692 9170 16707 16716 31073 31073 -0.001548647649542545 LYEEERFK 8 Unmodified _LYEEERFK_ 0 0 0 L1M5_dup41941|chr13:77183846-77184718:-|1.5036606618813502|0.0708263016163624|4.41|151.0|8|1|sense L1M5_dup41941|chr13:77183846-77184718:-|1.5036606618813502|0.0708263016163624|4.41|151.0|8|1|sense L1M5_dup41941|chr13:77183846-77184718:-|1.5036606618813502|0.0708263016163624|4.41|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.283447265625 2 557.282389 1112.55022 0.43176 0.00024061 0.044082 2.4566E-05 0.47584 0.00026518 557.2823008556405 42.261 0.63141 46.019 45.741 46.373 3.7579 121 60 3 0 0 0 0.82752 1 7859 7859 2.3027 0 1 182650 26693 9170 16707 16716 31074 31074 -0.001548647649542545 LYEKIVVY 8 Unmodified _LYEKIVVY_ 0 0 0 REV__MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|18|1|anti-sense REV__MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7975463867188 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 89.099 1 92.722 92.222 93.222 3.6229 0 0 0 0.40738 1 21383 21383 0.79363 0 1 + 26694 31909 16708 16717 31075 31075 0.06796699251208338 LYELHVFTF 9 Unmodified _LYELHVFTF_ 0 0 0 ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|2|intron;ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|4|intron;ENSG00000060069.17,CTDP1,chr18,+,I10.1,79710437,79712971|37|10.06|1|intron;ENSG00000060069.17,CTDP1,chr18,+,I10.1,79710437,79712971|37|10.06|2|intron;ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|1|intron;nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|2|intron ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|2|intron MSMS UPN48_class_I_Rep_2 6 584.8051147460938 2 584.8055 1167.59645 NaN NaN NaN NaN NaN NaN NaN 77.661 1 81.283 80.783 81.783 3.6222 0 0 0 0.29868 1 18393 18393 10.824 1.4408 1 26695 964 16709 16718 31076 31076 0.0193520013710895 LYELHVFTF 9 Unmodified _LYELHVFTF_ 0 0 0 ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|2|intron;ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|4|intron;ENSG00000060069.17,CTDP1,chr18,+,I10.1,79710437,79712971|37|10.06|1|intron;ENSG00000060069.17,CTDP1,chr18,+,I10.1,79710437,79712971|37|10.06|2|intron;ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|1|intron;nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|2|intron ENSG00000060069.17,CTDP1,chr18,+,I9.1,79704918,79710345|50|10.77|2|intron MULTI-MSMS UPN48_class_I_Rep_3 7 584.8057861328125 2 584.8055 1167.59645 0.54046 0.00031606 -0.036003 -2.1055E-05 0.50446 0.00029501 585.3069491949954 77.578 0.32446 81.18 80.924 81.248 3.6016 50 29 2 0 0 0 0.13631 1 18329 18329 26.884 7.6267 1 117480 26696 964 16709 16718 31077 31077 0.0193520013710895 LYEMFRRGKP 10 Unmodified _LYEMFRRGKP_ 0 0 0 L1MB7_dup21656|chr20:3912982-3913348:-|1.741952141516373|0.0447621814506628|5.28|151.0|10|2|sense L1MB7_dup21656|chr20:3912982-3913348:-|1.741952141516373|0.0447621814506628|5.28|151.0|10|2|sense L1MB7_dup21656|chr20:3912982-3913348:-|1.741952141516373|0.0447621814506628|5.28|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 648.849609375 2 648.847707 1295.68086 NaN NaN NaN NaN NaN NaN NaN 91.094 1 94.72 94.22 95.22 3.626 0 0 0 0.53105 1 21891 21891 3.5965 0.31518 1 26697 10799 16710 16719 31078 31078 0.04484827682244941 LYEQVRLR 8 Unmodified _LYEQVRLR_ 0 0 0 nc|ENSG00000214357|A8MQ27-3|NEURL1B;ENSG00000214357|ENST00000369800|NEURL1B nc|ENSG00000214357|A8MQ27-3|NEURL1B nc|ENSG00000214357|A8MQ27-3|NEURL1B MULTI-MSMS UPN48_class_I_Rep_2 6 538.8142700195312 2 538.81419 1075.61383 0.58945 0.0003176 -0.2866 -0.00015442 0.30285 0.00016318 538.814020890326 55.533 0.82462 59.089 58.64 59.465 3.5559 89 50 2 0 0 0 0.82752 1 11897 11897 6.7232 0.51738 1 340320 26698 5613 16711 16720 31079 31079 0.07904540462777732 LYERNLLR 8 Unmodified _LYERNLLR_ 0 0 0 REV__ENST00000362003.9_1_4:759867-759987:+|nuORF REV__ENST00000362003.9_1_4:759867-759987:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 538.8148803710938 2 538.81419 1075.61383 0.42755 0.00023037 -0.1569 -8.4537E-05 0.27066 0.00014583 538.814123603774 55.53 0.78532 59.038 58.706 59.491 3.5082 103 52 3 0 0 0 0.82752 2 11790 11790;11884 15.847 4.2069 1 303210 + 26699 21913 16712 16721 31080;31081 31080 0.07904540462777732 LYERNLLR 8 Unmodified _LYERNLLR_ 0 0 0 REV__ENST00000362003.9_1_4:759867-759987:+|nuORF REV__ENST00000362003.9_1_4:759867-759987:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 538.8150024414062 2 538.81419 1075.61383 0.44478 0.00023965 -0.10636 -5.731E-05 0.33841 0.00018234 538.8140628949074 55.517 0.84217 59.073 58.575 59.418 3.5554 99 51 3 0 0 0 0.82752 1 11680 11680 21.747 0 1 419310 + 26700 21913 16712 16721 31082 31082 0.07904540462777732 LYERPRYQR 9 Unmodified _LYERPRYQR_ 0 0 0 REV__ENSG00000145217|ENST00000398516|SLC26A1 REV__ENSG00000145217|ENST00000398516|SLC26A1 MSMS UPN46_class_I_Rep_3 1 640.8441772460938 2 640.846553 1279.67855 NaN NaN NaN NaN NaN NaN NaN 70.174 1 70.174 69.674 70.674 0 0 0 0 0.39428 1 16115 16115 2.0598 0 1 + 26701 19507 16713 16722 31083 31083 0.04990115268788031 LYERQFQEN 9 Unmodified _LYERQFQEN_ 0 0 0 L1MC1_dup538|chr1:116525953-116527849:-|4.705367530376088|0.462508509648441|3.35|151.0|23|1|sense L1MC1_dup538|chr1:116525953-116527849:-|4.705367530376088|0.462508509648441|3.35|151.0|23|1|sense L1MC1_dup538|chr1:116525953-116527849:-|4.705367530376088|0.462508509648441|3.35|151.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 613.5447387695312 2 613.793652 1225.57275 NaN NaN NaN NaN NaN NaN NaN 25.181 1 28.747 28.247 29.247 3.5667 0 0 0 0.39518 1 2891 2891 1.8442 0 1 26702 11163 16714 16723 31084 31084 -0.031012653673087698 LYFHINQTL 9 Unmodified _LYFHINQTL_ 0 0 0 nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A nc|ENSG00000133193|Q969W3|VCF1 nc|ENSG00000133193|Q969W3|VCF1 MSMS UPN48_class_I_Rep_3 7 574.80859375 2 574.808574 1147.60259 NaN NaN NaN NaN NaN NaN NaN 62.04 1 65.55 65.05 66.05 3.5104 0 0 0 0.38478 1 13760 13760 4.3292 0 1 26703 2794 16715 16724 31085 31085 0.03469718368660324 LYFINRKR 8 Unmodified _LYFINRKR_ 0 0 0 ENST00000430246.6_1_14:21733236-21733404:-|nuORF ENST00000430246.6_1_14:21733236-21733404:-|nuORF ENST00000430246.6_1_14:21733236-21733404:-|nuORF MSMS UPN47_class_I_Rep_2 3 555.3347778320312 2 555.33255 1108.65055 NaN NaN NaN NaN NaN NaN NaN 44.469 1 47.824 47.324 48.324 3.3556 0 0 0 0.40738 1 9276 9276 0.79363 0 1 26704 6720 16716 16725 31086 31086 0.10056837079355319 LYFIRKEKNI 10 Unmodified _LYFIRKEKNI_ 0 0 0 REV__CON__Q58D62 REV__CON__Q58D62 MSMS UPN46_class_I_Rep_3 1 441.931396484375 3 441.930962 1322.77106 NaN NaN NaN NaN NaN NaN NaN 53.329 1 53.329 52.829 53.829 0 0 0 0 0.53105 1 11468 11468 0.77653 0 1 + + 26705 17500 16717 16726 31087 31087 0.1225820028232647 LYFKKKKDVI 10 Unmodified _LYFKKKKDVI_ 0 0 0 L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|17|2|sense L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|17|2|sense L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 641.3975219726562 2 641.400099 1280.78564 NaN NaN NaN NaN NaN NaN NaN 105.01 1 105.01 104.51 105.51 0 0 0 0 0.53105 1 25620 25620 1.4819 0.28856 1 26706 10983 16718 16727 31088 31088 0.15648272430462384 LYFLHNHAF 9 Unmodified _LYFLHNHAF_ 0 0 0 REV__ENST00000428632.7_1_12:113682520-113726187:+|nuORF REV__ENST00000428632.7_1_12:113682520-113726187:+|nuORF MSMS UPN48_class_I_Rep_3 7 581.2977294921875 2 581.295633 1160.57671 NaN NaN NaN NaN NaN NaN NaN 61.2 1 64.712 64.212 65.212 3.5129 0 0 0 0.36505 1 13505 13505 7.2892 0.93513 1 + 26707 20906 16719 16728 31089 31089 0.0028486891701504646 LYFQFFLY 8 Unmodified _LYFQFFLY_ 0 0 0 REV__L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|151|3|anti-sense REV__L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|151|3|anti-sense MSMS UPN47_class_I_Rep_3 4 570.77294921875 2 570.791861 1139.56917 NaN NaN NaN NaN NaN NaN NaN 50.548 1 53.774 53.274 54.274 3.2262 0 0 0 0.39408 1 11177 11177 10.183 0.83596 1 + 26708 26476 16720 16729 31090 31090 0.004967165967627807 LYFWGLTP 8 Unmodified _LYFWGLTP_ 0 0 0 L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|63|3|sense L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|63|3|sense L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|63|3|sense MSMS UPN48_class_I_Rep_2 6 498.76409912109375 2 498.763104 995.511654 NaN NaN NaN NaN NaN NaN NaN 34.386 1 38.06 37.56 38.56 3.6735 0 0 0 0.40604 1 5537 5537 2.5775 0 1 26709 11328 16721 16730 31091 31091 0.01371874391190886 LYFYLHSYE 9 Unmodified _LYFYLHSYE_ 0 0 0 REV__L1MD_dup139|chr1:51459525-51460134:+|1.5828322934238226|0.0451462730716434|5.13|151.0|33|2|anti-sense REV__L1MD_dup139|chr1:51459525-51460134:+|1.5828322934238226|0.0451462730716434|5.13|151.0|33|2|anti-sense MSMS UPN47_class_I_Rep_2 3 617.7930908203125 2 617.792589 1233.57063 NaN NaN NaN NaN NaN NaN NaN 66.268 1 69.527 69.027 70.027 3.2588 0 0 0 0.39428 1 15910 15910 2.0598 0.40713 1 + 26710 27262 16722 16731 31092 31092 -0.036816941051256435 LYGADFVLGRD 11 Unmodified _LYGADFVLGRD_ 0 0 0 ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8 ENSG00000138892|ENST00000433387|TTLL8 ENSG00000138892|ENST00000433387|TTLL8 MULTI-MSMS UPN48_class_I_Rep_3 7 613.3142700195312 2 613.31422 1224.61389 0.4548 0.00027894 -0.22844 -0.00014011 0.22636 0.00013883 613.3140292063115 55.737 0.68965 59.292 58.931 59.621 3.5554 78 47 2 0 0 0 0.37961 1 11912 11912 10.8 3.5103 1 266470 26711 3121 16723 16732 31093 31093 0.010564956721509589 LYGESLYIW 9 Unmodified _LYGESLYIW_ 0 0 0 REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 572.2899169921875 2 572.289682 1142.56481 0.52946 0.000303 -0.091902 -5.2594E-05 0.43756 0.00025041 572.28957810499 69.122 1.442 72.632 72.143 73.585 3.5094 324 111 5 0 0 0 0.32219 2 16116 16116;16131 12.532 3.1484 1 2894700 + 26712 22577 16724 16733 31094;31095 31094 -0.0007679261682369543 LYGFILGVLL 10 Unmodified _LYGFILGVLL_ 0 0 0 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 MULTI-MSMS UPN48_class_I_Rep_2 6 554.344482421875 2 554.344261 1106.67397 0.48904 0.0002711 -0.17299 -9.5895E-05 0.31605 0.0001752 554.3441098720408 77.008 0.38299 80.619 80.405 80.788 3.6116 71 38 2 0 0 0 0.49259 1 18207 18207 12.532 0.89125 1 216780 + 26713 19224 16725 16734 31096 31096 0.12489838073338433 LYGFILGVLL 10 Unmodified _LYGFILGVLL_ 0 0 0 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 MULTI-MSMS UPN48_class_I_Rep_3 7 554.3444213867188 2 554.344261 1106.67397 0.43499 0.00024113 -0.15603 -8.6492E-05 0.27896 0.00015464 554.3440718134617 76.993 0.46764 80.594 80.456 80.924 3.6016 56 39 2 0 0 0 0.49259 1 18200 18200 12.532 0.89125 1 195350 + 26714 19224 16725 16734 31097 31097 0.12489838073338433 LYGFILGVLL 10 Unmodified _LYGFILGVLL_ 0 0 0 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 MULTI-MATCH UPN48_class_I_Rep_1 5 2 554.344261 1106.67397 0.52166 0.00028918 -0.5449 -0.00030206 -0.023238 -1.2882E-05 554.3438943578792 77.012 0.096146 80.522 80.493 80.589 3.5102 0.0086371 -0.00037451 NaN 12.532 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 50575 + 26715 19224 16725 16734 0.12489838073338433 LYGFILGVLL 10 Unmodified _LYGFILGVLL_ 0 0 0 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 554.344261 1106.67397 0.43599 0.00024169 -0.16375 -9.0774E-05 0.27224 0.00015091 554.3441230449921 76.816 0.20525 80.399 80.253 80.458 3.5831 -0.11463 4.8064E-05 NaN 12.532 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 103130 + 26716 19224 16725 16734 0.12489838073338433 LYGKIPNLK 9 Unmodified _LYGKIPNLK_ 0 0 0 REV__L1ME4b_dup344|chr1:44429702-44430128:+|3.4319990968122376|0.0024155043826182|10.47|150.0|36|3|anti-sense REV__L1ME4b_dup344|chr1:44429702-44430128:+|3.4319990968122376|0.0024155043826182|10.47|150.0|36|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 522.807861328125 2 523.32386 1044.63317 0.0014516 7.5965E-07 -0.15102 -7.9034E-05 -0.14957 -7.8274E-05 523.3236203543956 63.692 0.31197 66.948 66.733 67.045 3.2556 49 27 2 0 0 0 0.12235 1 15116 15116 4.756 2.6963 1 76618 + 26717 28291 16726 16735 31098 31098 0.11263496753667823 LYGLVHQGMK 10 Unmodified _LYGLVHQGMK_ 0 0 0 ENSG00000126583|ENST00000263431|PRKCG ENSG00000126583|ENST00000263431|PRKCG ENSG00000126583|ENST00000263431|PRKCG MSMS UPN46_class_I_Rep_3 1 573.3113403320312 2 573.310426 1144.6063 NaN NaN NaN NaN NaN NaN NaN 73.332 1 73.332 72.832 73.832 0 0 0 0 0.53105 1 16994 16994 1.4819 0.79152 1 26718 2542 16727 16736 31099 31099 0.039780648708756416 LYGTKLPEEG 10 Unmodified _LYGTKLPEEG_ 0 0 0 L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|121|3|sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|121|3|sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|121|3|sense MSMS UPN47_class_I_Rep_3 4 553.7904663085938 2 553.790047 1105.56554 NaN NaN NaN NaN NaN NaN NaN 64.075 1 67.249 66.749 67.749 3.1741 0 0 0 0.53105 1 15299 15299 3.5965 1.019 1 26719 14820 16728 16737 31100 31100 0.01698002032230761 LYGVWWFF 8 Unmodified _LYGVWWFF_ 0 0 0 REV__L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|121|1|anti-sense REV__L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|121|1|anti-sense MSMS UPN48_class_I_Rep_1 5 559.2788696289062 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 67.119 1 70.571 70.071 71.071 3.4516 0 0 0 0.39167 1 15400 15400 11.114 0 1 + 26720 29138 16729 16738 31101 31101 -0.010321328548798192 LYGYTTFHL 9 Unmodified _LYGYTTFHL_ 0 0 0 L1MB7_dup17562|chr14:75060264-75060783:+|1.8739230432510223|0.3433789260540611|2.45|150.0|34|3|anti-sense L1MB7_dup17562|chr14:75060264-75060783:+|1.8739230432510223|0.3433789260540611|2.45|150.0|34|3|anti-sense L1MB7_dup17562|chr14:75060264-75060783:+|1.8739230432510223|0.3433789260540611|2.45|150.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.7825927734375 2 557.782025 1113.5495 0.55321 0.00030857 -0.25955 -0.00014477 0.29365 0.0001638 557.781841458554 66.411 0.2917 69.863 69.693 69.984 3.4516 26 18 2 0 0 0 0.40174 1 15143 15143 7.9102 0 1 115040 26721 10744 16730 16739 31102 31102 -0.002736594140287707 LYHAKKKI 8 Unmodified _LYHAKKKI_ 0 0 0 REV__MSTB1_dup3782|chr15:42257138-42257553:+|1.0010041562544485|0.0186535783940814|5.75|151.0|12|3|sense REV__MSTB1_dup3782|chr15:42257138-42257553:+|1.0010041562544485|0.0186535783940814|5.75|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 500.818359375 2 500.818744 999.622936 NaN NaN NaN NaN NaN NaN NaN 27.07 1 30.826 30.326 31.326 3.7555 0 0 0 0.40738 1 3509 3509 0.79363 0 1 + 26722 31904 16731 16740 31103 31103 0.12310933819128422 LYHGWKQK 8 Unmodified _LYHGWKQK_ 0 0 0 L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|85|1|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|85|1|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|85|1|anti-sense MSMS UPN46_class_I_Rep_3 1 530.2901611328125 2 530.290351 1058.56615 NaN NaN NaN NaN NaN NaN NaN 119.96 1 119.96 119.46 120.46 0 0 0 0 0.40738 1 29841 29841 0.79363 0 1 26723 13253 16732 16741 31104 31104 0.03920886262608292 LYHHHHVI 8 Unmodified _LYHHHHVI_ 0 0 0 L1M5_dup24184|chr7:101840083-101840881:-|2.267424807598861|0.0153863633133674|7.2|151.0|18|2|sense L1M5_dup24184|chr7:101840083-101840881:-|2.267424807598861|0.0153863633133674|7.2|151.0|18|2|sense L1M5_dup24184|chr7:101840083-101840881:-|2.267424807598861|0.0153863633133674|7.2|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 528.277587890625 2 528.280318 1054.54608 NaN NaN NaN NaN NaN NaN NaN 76.668 1 80.251 79.751 80.751 3.5831 0 0 0 0.39167 1 18065 18065 11.114 2.5212 1 26724 9121 16733 16742 31105 31105 0.020991353226463616 LYHLEELKI 9 Unmodified _LYHLEELKI_ 0 0 0 REV__L1M1_dup3189|chr5:143380818-143382228:+|1.9736080063333308|0.0761824135311785|4.7|151.0|18|2|sense REV__L1M1_dup3189|chr5:143380818-143382228:+|1.9736080063333308|0.0761824135311785|4.7|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 579.3306884765625 2 579.331882 1156.64921 NaN NaN NaN NaN NaN NaN NaN 42.255 1 45.494 44.994 45.994 3.2394 0 0 0 0.38784 1 8653 8653 3.5965 0.60125 1 + 26725 24074 16734 16743 31106 31106 0.07715158199948746 LYHLEELKI 9 Unmodified _LYHLEELKI_ 0 0 0 REV__L1M1_dup3189|chr5:143380818-143382228:+|1.9736080063333308|0.0761824135311785|4.7|151.0|18|2|sense REV__L1M1_dup3189|chr5:143380818-143382228:+|1.9736080063333308|0.0761824135311785|4.7|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 579.3294067382812 2 579.331882 1156.64921 NaN NaN NaN NaN NaN NaN NaN 42.653 1 45.892 45.392 46.392 3.2394 0 0 0 0.39428 1 8773 8773 2.0598 0 1 + 26726 24074 16734 16743 31107 31107 0.07715158199948746 LYHPLLRWC 9 Unmodified _LYHPLLRWC_ 0 0 0 MER34A1_dup355|chr7:105305642-105306091:-|1.0116692415378217|0.1403743280035089|2.85|151.0|12|2|sense MER34A1_dup355|chr7:105305642-105306091:-|1.0116692415378217|0.1403743280035089|2.85|151.0|12|2|sense MER34A1_dup355|chr7:105305642-105306091:-|1.0116692415378217|0.1403743280035089|2.85|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 600.821044921875 2 600.820961 1199.62737 NaN NaN NaN NaN NaN NaN NaN 39.557 1 43.224 42.724 43.724 3.6668 0 0 0 0.39518 1 7749 7749 1.8442 0 1 26727 15924 16735 16744 31108 31108 0.03554074970406873 LYHPRSRK 8 Unmodified _LYHPRSRK_ 0 0 0 MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|28|1|anti-sense MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|28|1|anti-sense MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_3 7 528.8055419921875 2 528.8067 1055.59885 NaN NaN NaN NaN NaN NaN NaN 115.16 1 118.8 118.3 119.3 3.6433 0 0 0 0.40738 1 27396 27396 0.79363 0 1 26728 15943 16736 16745 31109 31109 0.0732709338544737 LYHQNKWY 8 Unmodified _LYHQNKWY_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|32|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 576.2855834960938 2 576.285266 1150.55598 NaN NaN NaN NaN NaN NaN NaN 61.088 1 64.566 64.066 65.066 3.4785 0 0 0 0.40604 1 13542 13542 2.5775 0 1 + 26729 24878 16737 16746 31110 31110 -0.013277214626214118 LYHSMLTLIVG 11 Unmodified _LYHSMLTLIVG_ 0 0 0 REV__Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|35|2|sense REV__Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|35|2|sense MSMS UPN47_class_I_Rep_2 3 416.23529052734375 3 416.233653 1245.67913 NaN NaN NaN NaN NaN NaN NaN 104.68 1 108.21 107.71 108.71 3.5289 0 0 0 0.28775 1 25417 25417 7.0371 3.1912 1 + 26730 32508 16738 16747 31111 31111 0.06611773873623861 LYIALHLKA 9 Unmodified _LYIALHLKA_ 0 0 0 ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 MULTI-SECPEP UPN47_class_I_Rep_2 3 520.8687744140625 2 521.326402 1040.63825 0.23408 0.00012203 1.2813 0.00066796 1.5153 0.00078999 521.3269702467109 109.42 0.075104 112.95 112.9 112.97 3.5307 12 9 2 0 0 0 0.12235 1 26650 26650 4.756 0.42677 1 420390 26731 3692 16739 16748 31112 31112 0.11955800616328816 LYIALHLKA 9 Unmodified _LYIALHLKA_ 0 0 0 ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 MULTI-SECPEP UPN47_class_I_Rep_3 4 520.8550415039062 2 521.326402 1040.63825 0.38225 0.00019928 1.9118 0.00099669 2.2941 0.001196 521.3275115781975 108.81 0.13545 112.35 112.33 112.47 3.5382 19 13 2 0 0 0 0.12235 1 26699 26699 4.756 0.42677 1 3541700 26732 3692 16739 16748 31113 31113 0.11955800616328816 LYICFMRGLL 10 Unmodified _LYICFMRGLL_ 0 0 0 REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|234|2|anti-sense REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|234|2|anti-sense MSMS UPN46_class_I_Rep_3 1 614.83056640625 2 614.83268 1227.65081 NaN NaN NaN NaN NaN NaN NaN 71.074 1 71.074 70.574 71.574 0 0 0 0 0.53105 1 16360 16360 6.2058 0 1 + 26733 30389 16740 16749 31114 31114 0.0460875269270673 LYIDNKYIQ 9 Unmodified _LYIDNKYIQ_ 0 0 0 L1ME3Cz_dup1022|chr2:24513115-24513571:-|1.1893923728231772|0.0223294847825653|5.74|151.0|10|2|sense L1ME3Cz_dup1022|chr2:24513115-24513571:-|1.1893923728231772|0.0223294847825653|5.74|151.0|10|2|sense L1ME3Cz_dup1022|chr2:24513115-24513571:-|1.1893923728231772|0.0223294847825653|5.74|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 585.31396484375 2 585.313689 1168.61282 0.38566 0.00022573 0.19093 0.00011175 0.57659 0.00033749 585.3134508962495 55.676 0.61293 59.232 58.899 59.512 3.5554 70 41 2 0 0 0 0.28552 2 11818 11818;11884 14.838 0 1 147850 26734 12757 16741 16750 31115;31116 31115 0.035262813032204576 LYIDNKYIQ 9 Unmodified _LYIDNKYIQ_ 0 0 0 L1ME3Cz_dup1022|chr2:24513115-24513571:-|1.1893923728231772|0.0223294847825653|5.74|151.0|10|2|sense L1ME3Cz_dup1022|chr2:24513115-24513571:-|1.1893923728231772|0.0223294847825653|5.74|151.0|10|2|sense L1ME3Cz_dup1022|chr2:24513115-24513571:-|1.1893923728231772|0.0223294847825653|5.74|151.0|10|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 585.313689 1168.61282 0.47625 0.00027876 0.094366 5.5234E-05 0.57062 0.00033399 585.313457600327 55.731 0.5724 59.239 58.982 59.554 3.5082 0.031971 1.2596E-05 NaN 14.838 63 39 2 NaN NaN NaN NaN 0 NaN NaN 0 166190 26735 12757 16741 16750 0.035262813032204576 LYIDQFAKL 9 Unmodified _LYIDQFAKL_ 0 0 0 Tigger17a_dup357|chr3:16332858-16333469:-|1.0470211447767872|0.2730460091997834|1.94|151.0|18|3|sense Tigger17a_dup357|chr3:16332858-16333469:-|1.0470211447767872|0.2730460091997834|1.94|151.0|18|3|sense Tigger17a_dup357|chr3:16332858-16333469:-|1.0470211447767872|0.2730460091997834|1.94|151.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 555.81298828125 2 555.813325 1109.6121 0.64933 0.0003609 -0.33466 -0.00018601 0.31466 0.00017489 555.8129322054676 60.649 0.35692 64.122 63.899 64.256 3.4737 39 26 2 0 0 0 0.079935 1 13419 13419 38.615 0 1 100790 26736 33257 16742 16751 31117 31117 0.061674866541807205 LYIDSRQNL 9 Unmodified _LYIDSRQNL_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MSMS UPN47_class_I_Rep_2 3 561.2989501953125 2 561.301113 1120.58767 NaN NaN NaN NaN NaN NaN NaN 71.571 1 74.861 74.361 75.361 3.2899 0 0 0 0.38639 1 17500 17500 3.9444 1.3669 1 26737 5465 16743 16752 31118 31118 0.032202265006844755 LYIIQNNSF 9 Unmodified _LYIIQNNSF_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MSMS UPN48_class_I_Rep_1 5 556.3052368164062 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 67.467 1 70.918 70.418 71.418 3.4516 0 0 0 0.15455 1 15509 15509 19.257 1.1106 1 26738 1235 16744 16753 31119 31119 0.02009725614720992 LYIITENKR 9 Unmodified _LYIITENKR_ 0 0 0 REV__L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|3|1|sense REV__L1ME4b_dup6392|chr5:62319916-62320530:-|2.2181391574657194|0.0232008493026495|6.58|150.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 574.8699340820312 2 575.334956 1148.65536 0.40213 0.00023136 2.3098 0.0013289 2.7119 0.0015603 575.3366060501081 108.46 0.16528 112.09 111.96 112.12 3.6313 17 12 3 0 0 0 0.12444 1 26237 26237 2.0598 0.40713 1 1536700 + 26739 28302 16745 16754 31120 31120 0.0869767643148407 LYIITYEWH 9 Unmodified _LYIITYEWH_ 0 0 0 REV__L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|32|2|anti-sense REV__L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 619.3170166015625 2 619.316232 1236.61791 0.46641 0.00028885 -0.066668 -4.1289E-05 0.39974 0.00024756 619.3163100010241 72.583 0.21459 76.056 75.931 76.145 3.4732 25 16 2 0 0 0 0.32219 2 17037 17037;17047 12.532 0 1 101860 + 26740 28310 16746 16755 31121;31122 31121 0.009065851658533575 LYIITYEWH 9 Unmodified _LYIITYEWH_ 0 0 0 REV__L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|32|2|anti-sense REV__L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|32|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 619.316232 1236.61791 0.46641 0.00028885 -0.066668 -4.1289E-05 0.39974 0.00024756 619.3163100010241 72.583 0.21459 76.056 75.931 76.145 3.4732 -0.029526 -0.00060903 NaN 12.532 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 101860 + 26741 28310 16746 16755 0.009065851658533575 LYIITYEWH 9 Unmodified _LYIITYEWH_ 0 0 0 REV__L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|32|2|anti-sense REV__L1ME4b_dup9391|chr7:99135463-99136004:-|1.266265834739058|0.0126399910582979|6.65|151.0|32|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 619.316232 1236.61791 0.48472 0.0003002 0.6782 0.00042002 1.1629 0.00072022 619.8180525190247 72.551 0.065903 76.115 76.088 76.154 3.5645 0.029526 0.00031359 NaN 12.532 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 54204 + 26742 28310 16746 16755 0.009065851658533575 LYIKGSKFP 9 Unmodified _LYIKGSKFP_ 0 0 0 REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|164|3|anti-sense REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|164|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.810546875 2 526.810585 1051.60662 NaN NaN NaN NaN NaN NaN NaN 76.868 1 80.283 79.783 80.783 3.4149 0 0 0 0.096434 1 19043 19043 25.399 3.6527 1 + 26743 27086 16747 16756 31123 31123 0.08287807862393493 LYILKVDKM 9 Unmodified _LYILKVDKM_ 0 0 0 L1MB2_dup4834|chrX:74264008-74264233:-|3.2319316839252856|0.1013542772347743|4.99|151.0|3|1|sense L1MB2_dup4834|chrX:74264008-74264233:-|3.2319316839252856|0.1013542772347743|4.99|151.0|3|1|sense L1MB2_dup4834|chrX:74264008-74264233:-|3.2319316839252856|0.1013542772347743|4.99|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 561.8348388671875 2 561.833203 1121.65185 NaN NaN NaN NaN NaN NaN NaN 73.412 1 76.949 76.449 77.449 3.5373 0 0 0 0.26661 1 17175 17175 12.532 4.6214 1 26744 10251 16748 16757 31124 31124 0.09589290333246936 LYILYYVIKRW 11 Unmodified _LYILYYVIKRW_ 0 0 0 REV__L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense REV__L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.9690856933594 3 510.634146 1528.88061 0.32359 0.00016524 -0.025973 -1.3263E-05 0.29762 0.00015197 510.6340626391048 98.18 0.20071 101.66 101.58 101.78 3.4836 39 26 2 0 0 0 0.68583 1 24068 24068 0 0 1 93445 + 26745 27502 16749 16758 31125 31125 0.13732205901624184 LYILYYYDI 9 Unmodified _LYILYYYDI_ 0 0 0 L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|97|2|anti-sense L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|97|2|anti-sense L1MB5_dup3801|chr9:5704512-5706178:-|1.6218562830856116|0.1498766335839511|3.44|151.0|97|2|anti-sense MSMS UPN47_class_I_Rep_2 3 619.8206787109375 2 619.820815 1237.62708 NaN NaN NaN NaN NaN NaN NaN 14.199 1 17.586 17.086 18.086 3.3871 0 0 0 0.4007 1 515 515 0.52476 0 1 26746 10616 16750 16759 31126 31126 0.017769337315030498 LYINDLDYP 9 Unmodified _LYINDLDYP_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MULTI-MSMS UPN47_class_I_Rep_1 2 563.7770385742188 2 563.276772 1124.53899 0.38844 0.0002188 0.08438 4.7529E-05 0.47282 0.00026633 563.2767428234652 74.997 1.1982 78.391 77.999 79.197 3.3937 265 109 4 0 0 0 0.43153 2 18404 18404;18697 6.2058 0.47393 1 692180 + 26747 19199 16751 16760 31127;31128 31127 -0.01829686859082358 LYINDLDYP 9 Unmodified _LYINDLDYP_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MULTI-MSMS UPN47_class_I_Rep_2 3 563.2764892578125 2 563.276772 1124.53899 0.45665 0.00025722 0.22507 0.00012677 0.68171 0.00038399 563.276829642386 75.179 1.1389 78.492 78.115 79.254 3.3127 295 113 4 0 0 0 0.43153 2 18730 18730;18761 6.2058 0.47393 1 952050 + 26748 19199 16751 16760 31129;31130 31129 -0.01829686859082358 LYINDLDYP 9 Unmodified _LYINDLDYP_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MULTI-MSMS UPN47_class_I_Rep_2 3 563.2754516601562 2 563.276772 1124.53899 0.46396 0.00026134 -0.9787 -0.00055128 -0.51474 -0.00028994 563.2764481864327 76.018 0.23261 79.339 79.242 79.475 3.3216 40 22 3 0 0 0 0.43153 1 18786 18786 6.2058 0.47393 1 47832 + 26749 19199 16751 16760 31131 31131 -0.01829686859082358 LYINDLDYP 9 Unmodified _LYINDLDYP_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MULTI-MSMS UPN47_class_I_Rep_3 4 563.2783203125 2 563.276772 1124.53899 0.45776 0.00025785 0.20985 0.0001182 0.66761 0.00037605 563.2768373995103 75.256 1.1959 78.503 78.077 79.272 3.2464 322 115 4 0 0 0 0.43153 2 18558 18558;18828 6.2058 0.47393 1 909310 + 26750 19199 16751 16760 31132;31133 31132 -0.01829686859082358 LYIPIWVLC 9 Unmodified _LYIPIWVLC_ 0 0 0 REV__L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|81|1|anti-sense REV__L1MEg_dup8313|chr9:125945958-125947884:+|2.2373818022551117|0.1680187752732452|3.74|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.3185424804688 2 560.317189 1118.61982 NaN NaN NaN NaN NaN NaN NaN 76.956 1 80.225 79.725 80.725 3.269 0 0 0 0.39326 1 19150 19150 2.3027 0 1 + 26751 28786 16752 16761 31134 31134 0.06525922650121174 LYIPKRNA 8 Unmodified _LYIPKRNA_ 0 0 0 L1ME3_dup3939|chr7:92687687-92688308:-|1.91410847244654|0.0031956118013598|9.23|151.0|3|1|sense L1ME3_dup3939|chr7:92687687-92688308:-|1.91410847244654|0.0031956118013598|9.23|151.0|3|1|sense L1ME3_dup3939|chr7:92687687-92688308:-|1.91410847244654|0.0031956118013598|9.23|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.791259765625 2 487.792727 973.5709 0.18092 8.8252E-05 -0.79756 -0.00038904 -0.61663 -0.00030079 487.79192990158776 74.934 0.86096 78.424 77.821 78.682 3.49 125 91 2 0 0 0 0.82752 1 17582 17582 2.3027 0 1 180270 26752 12593 16753 16762 31135 31135 0.0830577040536582 LYIRMKKR 8 Unmodified _LYIRMKKR_ 0 0 0 REV__ENST00000579527.5_1_17:56430077-56430152:+|nuORF REV__ENST00000579527.5_1_17:56430077-56430152:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.344482421875 2 554.344603 1106.67465 NaN NaN NaN NaN NaN NaN NaN 77.183 1 80.693 80.193 81.193 3.5102 0 0 0 0.39624 1 18356 18356 9.3474 0 1 + 26753 23120 16754 16763 31136 31136 0.12558354241377856 LYIRQKDRFRE 11 Unmodified _LYIRQKDRFRE_ 0 0 0 REV__LTR34_dup56|chr5:80169835-80170576:-|2.7601287706564666|0.1365865778020565|4.34|151.0|51|3|anti-sense REV__LTR34_dup56|chr5:80169835-80170576:-|2.7601287706564666|0.1365865778020565|4.34|151.0|51|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.6197814941406 3 508.619558 1522.83684 0.18137 9.2248E-05 -0.26414 -0.00013434 -0.082767 -4.2097E-05 508.9536889389062 35.698 1.279 39.364 38.906 40.185 3.6667 295 129 3 0 0 0 0.68478 1 5879 5879 0.094841 0 1 370760 + 26754 30906 16755 16764 31137 31137 0.09633989457188363 LYISRRFV 8 Unmodified _LYISRRFV_ 0 0 0 REV__L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|109|3|sense REV__L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|109|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.8184204101562 2 527.313826 1052.6131 0.18166 9.5792E-05 3.1399 0.0016557 3.3215 0.0017515 527.8179466357673 76.917 0.13904 80.249 80.19 80.329 3.3315 16 11 2 0 0 0 0.82752 1 19059 19059 14.582 4.3983 1 242790 + 26755 28834 16756 16765 31138 31138 0.08889745813735317 LYISRRFV 8 Unmodified _LYISRRFV_ 0 0 0 REV__L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|109|3|sense REV__L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|109|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 527.313826 1052.6131 0.18166 9.5792E-05 3.1399 0.0016557 3.3215 0.0017515 527.8179466357673 76.917 0.13904 80.249 80.19 80.329 3.3315 -0.029879 0.00092028 NaN 14.582 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 242790 + 26756 28834 16756 16765 0.08889745813735317 LYISRRFV 8 Unmodified _LYISRRFV_ 0 0 0 REV__L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|109|3|sense REV__L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|109|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 527.313826 1052.6131 0.38199 0.00020143 1.6752 0.00088336 2.0572 0.0010848 527.8181156148266 77.04 0.13114 80.309 80.233 80.364 3.269 0.029879 -0.00062439 NaN 14.582 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 70443 + 26757 28834 16756 16765 0.08889745813735317 LYITSKLVF 9 Unmodified _LYITSKLVF_ 0 0 0 REV__L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|188|3|anti-sense REV__L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|188|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 542.3265991210938 2 542.326068 1082.63758 0.50901 0.00027605 -0.37821 -0.00020511 0.1308 7.0938E-05 542.3257049187215 65.612 0.64581 69.092 68.826 69.472 3.4792 65 46 2 0 0 0 0.39745 1 15007 15007 8.1555 0 1 139760 + 26758 26815 16757 16766 31139 31139 0.09956961176612822 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MULTI-MSMS UPN48_class_I_Rep_1 5 561.835693359375 2 561.333893 1120.65323 0.48784 0.00027384 -0.10429 -5.8543E-05 0.38355 0.0002153 561.3337252711457 73.506 0.30795 76.987 76.764 77.072 3.4812 47 30 2 0 0 0 0.043452 2 17296 17296;17311 51.63 11.68 1 239430 26759 1404 16758 16767 31140;31141 31140 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MULTI-MSMS UPN48_class_I_Rep_1 5 561.334228515625 2 561.333893 1120.65323 0.48692 0.00027333 -0.23616 -0.00013256 0.25076 0.00014076 561.3337201150428 73.692 0.18185 77.173 77.061 77.243 3.4812 39 19 3 0 0 0 0.033731 2 17387 17352;17387 55.503 11.73 1 277460 26760 1404 16758 16767 31142;31143 31143 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MULTI-MSMS UPN48_class_I_Rep_1 5 561.33251953125 2 561.333893 1120.65323 0.48679 0.00027325 -0.59067 -0.00033156 -0.10388 -5.8311E-05 561.3332253094684 73.844 0.144 77.326 77.221 77.365 3.4812 23 13 2 0 0 0 0.14216 1 17422 17422 26.268 3.1197 1 90316 26761 1404 16758 16767 31144 31144 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MULTI-MSMS UPN48_class_I_Rep_2 6 561.8358154296875 2 561.333893 1120.65323 0.48631 0.00027298 -0.24914 -0.00013985 0.23718 0.00013313 561.3337396715989 73.393 0.59343 76.971 76.703 77.297 3.5779 102 65 2 0 0 0 0.057664 4 17225 17191;17225;17268;17315 45.7 11.298 1 158230 26762 1404 16758 16767 31145;31146;31147;31148 31146 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MSMS UPN48_class_I_Rep_3 7 561.3340454101562 2 561.333893 1120.65323 NaN NaN NaN NaN NaN NaN NaN 73.29 1 76.827 76.327 77.327 3.5373 0 0 0 0.046227 1 17139 17139 38.176 7.9508 1 26763 1404 16758 16767 31149 31149 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MULTI-MATCH UPN48_class_I_Rep_3 7 2 561.333893 1120.65323 0.47456 0.00026639 -0.2926 -0.00016424 0.18196 0.00010214 561.3336883895082 73.358 0.0336 76.896 76.87 76.903 3.5373 -0.055457 -6.1858E-05 NaN 51.63 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 38376 26764 1404 16758 16767 0.09773247693647136 LYKANWHR 8 Unmodified _LYKANWHR_ 0 0 0 REV__ENST00000478601.1_1_3:122478069-122496706:-|nuORF REV__ENST00000478601.1_1_3:122478069-122496706:-|nuORF MSMS UPN48_class_I_Rep_2 6 544.2953491210938 2 544.293425 1086.5723 NaN NaN NaN NaN NaN NaN NaN 56.64 1 60.173 59.673 60.673 3.5333 0 0 0 0.40625 1 12181 12181 2.3027 0.65011 1 + 26765 20296 16759 16768 31150 31150 0.032474044941182 LYKDRLEEA 9 Unmodified _LYKDRLEEA_ 0 0 0 REV__ENSG00000198286|ENST00000396946|CARD11 REV__ENSG00000198286|ENST00000396946|CARD11 MULTI-MSMS UPN48_class_I_Rep_3 7 568.7935180664062 2 568.800946 1135.58734 0.3805 0.00021643 4.4678 0.0025413 4.8483 0.0027577 568.8035004326798 57.447 0.086407 60.979 60.931 61.017 3.5317 10 7 2 0 0 0 0.30034 1 12367 12367 13.906 0.86358 1 45380 + 26766 21120 16760 16769 31151 31151 0.024968067808231353 LYKEEHSFS 9 Unmodified _LYKEEHSFS_ 0 0 0 L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|50|1|anti-sense L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|50|1|anti-sense L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_2 6 570.0499877929688 2 570.272021 1138.52949 NaN NaN NaN NaN NaN NaN NaN 49.487 1 53.182 52.682 53.682 3.6946 0 0 0 0.38639 1 10004 10004 3.9444 0 1 26767 11457 16761 16770 31152 31152 -0.03423455144616128 LYKEERYP 8 Unmodified _LYKEERYP_ 0 0 0 REV__CON__Q28085 REV__CON__Q28085 MSMS UPN48_class_I_Rep_3 7 549.2811279296875 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 38.318 1 41.977 41.477 42.477 3.6595 0 0 0 0.40501 1 6570 6570 3.9444 1.3669 1 + + 26768 17489 16762 16771 31153 31153 0.010894390976545765 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS UPN48_class_I_Rep_1 5 581.2952880859375 2 581.294965 1160.57538 0.57418 0.00033377 -0.20312 -0.00011807 0.37106 0.0002157 581.2947763125557 60.946 0.65121 64.42 64.109 64.76 3.4737 90 56 2 0 0 0 0.095207 3 13540 13540;13609;13619 34.932 17.819 1 303210 26769 2716 16763 16772 31154;31155;31156 31154 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS UPN48_class_I_Rep_2 6 581.2946166992188 2 581.294965 1160.57538 0.54447 0.0003165 -0.023153 -1.3459E-05 0.52132 0.00030304 581.29478950132 60.892 0.60415 64.371 64.084 64.688 3.4785 93 55 3 0 0 0 0.038999 1 13523 13523 53.404 30.668 1 292690 26770 2716 16763 16772 31157 31157 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS UPN48_class_I_Rep_2 6 581.2947998046875 2 581.294965 1160.57538 0.54049 0.00031419 1.0872 0.00063199 1.6277 0.00094618 581.2943663410247 61.26 0.089317 64.738 64.717 64.806 3.4785 12 8 2 0 0 0 0.24936 1 13603 13603 17.113 3.2068 1 71896 26771 2716 16763 16772 31158 31158 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MSMS UPN48_class_I_Rep_3 7 581.2943725585938 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 61.008 1 64.521 64.021 65.021 3.5128 0 0 0 0.18866 1 13447 13447 17.113 3.2068 1 26772 2716 16763 16772 31159 31159 0.001511900376272024 LYKINKPAI 9 Unmodified _LYKINKPAI_ 0 0 0 REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.8333740234375 2 530.331685 1058.64882 0.39491 0.00020943 -0.062014 -3.2888E-05 0.33289 0.00017654 530.331556641443 66.934 0.49816 70.385 70.045 70.544 3.4516 44 31 2 0 0 0 0.48643 2 15313 15313;15359 2.0598 0 1 153660 + 26773 26602 16764 16773 31160;31161 31160 0.12183783270734239 LYKINKPAI 9 Unmodified _LYKINKPAI_ 0 0 0 REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 530.8333740234375 2 530.331685 1058.64882 0.39491 0.00020943 -0.062014 -3.2888E-05 0.33289 0.00017654 530.331556641443 66.934 0.49816 70.385 70.045 70.544 3.4516 44 31 2 0 0 0 0.12444 1 15313 15313 2.0598 0 1 153660 + 26774 26602 16764 16773 31162 31162 0.12183783270734239 LYKINKPAI 9 Unmodified _LYKINKPAI_ 0 0 0 REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 530.33203125 2 530.331685 1058.64882 0.44007 0.00023338 -0.17032 -9.0328E-05 0.26975 0.00014306 530.3314690451301 66.631 0.55791 70.118 70.023 70.581 3.4866 42 34 2 0 0 0 0.46434 2 15319 15228;15319 4.3292 0 1 114840 + 26775 26602 16764 16773 31163;31164 31164 0.12183783270734239 LYKINKPAI 9 Unmodified _LYKINKPAI_ 0 0 0 REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense REV__L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 530.331787109375 2 530.331685 1058.64882 0.53905 0.00028588 -0.26378 -0.00013989 0.27527 0.00014599 530.3315480471604 66.62 0.39 70.128 69.996 70.386 3.5077 34 23 2 0 0 0 0.46434 1 15178 15178 4.3292 0 1 141760 + 26776 26602 16764 16773 31165 31165 0.12183783270734239 LYKKYLLPLI 10 Unmodified _LYKKYLLPLI_ 0 0 0 nc|ENSG00000142655|O75381-2|PEX14;ENSG00000142655|ENST00000356607|PEX14 nc|ENSG00000142655|O75381-2|PEX14 nc|ENSG00000142655|O75381-2|PEX14 MSMS UPN46_class_I_Rep_3 1 632.405029296875 2 632.407392 1262.80023 NaN NaN NaN NaN NaN NaN NaN 69.55 1 69.55 69.05 70.05 0 0 0 0 0.53105 1 15943 15943 0.45834 0.057624 1 26777 3257 16765 16774 31166 31166 0.17934344578611672 LYKLNIVGIY 10 Unmodified _LYKLNIVGIY_ 0 0 0 L1MC3_dup494|chr1:173986868-173989018:-|9.379207212241951|0.1695853318336435|5.79|151.0|34|2|sense L1MC3_dup494|chr1:173986868-173989018:-|9.379207212241951|0.1695853318336435|5.79|151.0|34|2|sense L1MC3_dup494|chr1:173986868-173989018:-|9.379207212241951|0.1695853318336435|5.79|151.0|34|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 598.3572998046875 2 598.357899 1194.70125 0.50181 0.00030026 -0.38151 -0.00022828 0.1203 7.198E-05 598.357474492074 52.848 0.65401 56.043 55.816 56.47 3.1948 71 45 2 0 0 0 0.55873 1 11917 11917 4.3292 0.73274 1 152480 26778 11350 16766 16775 31167 31167 0.11168321613718035 LYKMCRMIL 9 Unmodified _LYKMCRMIL_ 0 0 0 REV__ENSG00000255151|ENST00000527482|GLYATL1B REV__ENSG00000255151|ENST00000527482|GLYATL1B MSMS UPN48_class_I_Rep_3 7 585.81494140625 2 585.813433 1169.61231 NaN NaN NaN NaN NaN NaN NaN 77.36 1 80.962 80.462 81.462 3.6016 0 0 0 0.35339 1 18269 18269 7.9102 0 1 + 26779 21378 16767 16776 31168 31168 0.03429123786531818 LYKPRRRYK 9 Unmodified _LYKPRRRYK_ 0 0 0 ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 ENSG00000135740|ENST00000299798|SLC9A5 MSMS UPN47_class_I_Rep_2 3 640.3928833007812 2 640.390931 1278.76731 NaN NaN NaN NaN NaN NaN NaN 51.655 1 54.99 54.49 55.49 3.3345 0 0 0 0.4007 1 11461 11461 0.52476 0 1 26780 2925 16768 16777 31169 31169 0.13907575299117525 LYKREPPRL 9 Unmodified _LYKREPPRL_ 0 0 0 AluJo_dup30458|chr7:101830460-101830758:-|1.473330568110128|0.0478130233346551|4.95|151.0|23|3|anti-sense AluJo_dup30458|chr7:101830460-101830758:-|1.473330568110128|0.0478130233346551|4.95|151.0|23|3|anti-sense AluJo_dup30458|chr7:101830460-101830758:-|1.473330568110128|0.0478130233346551|4.95|151.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.352294921875 2 586.35094 1170.68733 0.5291 0.00031024 0.40629 0.00023823 0.93539 0.00054846 586.3510962445381 64.331 0.63713 67.839 67.571 68.208 3.5083 82 58 2 0 0 0 0.43982 1 14481 14481 5.7319 0 1 189810 26781 102 16769 16778 31170 31170 0.10881088905284741 LYKSDLEWL 9 Unmodified _LYKSDLEWL_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MSMS UPN48_class_I_Rep_1 5 583.8085327148438 2 583.808239 1165.60193 NaN NaN NaN NaN NaN NaN NaN 62.749 1 66.212 65.712 66.712 3.4625 0 0 0 0.38639 1 14069 14069 3.9444 0 1 26782 4982 16770 16779 31171 31171 0.025748789289536944 LYKSGCSYIL 10 Unmodified _LYKSGCSYIL_ 0 0 0 L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.7965087890625 2 573.796817 1145.57908 0.42752 0.00024531 0.1556 8.9281E-05 0.58311 0.00033459 573.7969067736025 53.047 0.60083 56.566 56.406 57.007 3.5192 60 41 2 0 0 0 0.40112 1 11119 11119 19.362 2.249 1 114750 26783 14853 16771 16780 31172 31172 0.012115365398358335 LYKSGCSYIL 10 Unmodified _LYKSGCSYIL_ 0 0 0 L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.7970581054688 2 573.796817 1145.57908 0.33161 0.00019028 0.26855 0.00015409 0.60016 0.00034437 573.7969634905013 53.01 0.60725 56.594 56.285 56.892 3.5836 43 36 2 0 0 0 0.47804 1 11030 11030 13.615 1.3742 1 111650 26784 14853 16771 16780 31173 31173 0.012115365398358335 LYKSGCSYIL 10 Unmodified _LYKSGCSYIL_ 0 0 0 L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|184|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 573.796817 1145.57908 0.42752 0.00024531 0.1556 8.9281E-05 0.58311 0.00033459 573.7969067736025 53.047 0.60083 56.566 56.406 57.007 3.5192 -0.059152 5.6525E-05 NaN 19.362 60 41 2 NaN NaN NaN NaN 0 NaN NaN 0 114750 26785 14853 16771 16780 0.012115365398358335 LYKSSFLQP 9 Unmodified _LYKSSFLQP_ 0 0 0 MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|149|3|anti-sense MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|149|3|anti-sense MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|149|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7981567382812 2 541.797675 1081.5808 NaN NaN NaN NaN NaN NaN NaN 62.924 1 66.387 65.887 66.887 3.4625 0 0 0 0.39598 1 14123 14123 1.6526 0 1 26786 16224 16772 16781 31174 31174 0.043269136200933644 LYKVDRTF 8 Unmodified _LYKVDRTF_ 0 0 0 REV__L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|42|2|sense REV__L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|42|2|sense MSMS UPN46_class_I_Rep_3 1 521.2901000976562 2 521.290017 1040.56548 NaN NaN NaN NaN NaN NaN NaN 68.02 1 68.02 67.52 68.52 0 0 0 0 0.39242 1 15509 15509 10.824 0 1 + 26787 30122 16773 16782 31175 31175 0.0468204682290434 LYKVTTKIQ 9 Unmodified _LYKVTTKIQ_ 0 0 0 REV__L1MA5_dup3701|chr14:80623784-80625690:-|1.506811677124802|0.033223916168846|5.5|151.0|65|3|sense REV__L1MA5_dup3701|chr14:80623784-80625690:-|1.506811677124802|0.033223916168846|5.5|151.0|65|3|sense MSMS UPN48_class_I_Rep_2 6 547.3328247070312 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 69.31 1 72.832 72.332 73.332 3.5216 0 0 0 0.3967 1 16048 16048 1.4819 0 1 + 26788 25391 16774 16783 31176 31176 0.11167462062553568 LYKWCYVY 8 Unmodified _LYKWCYVY_ 0 0 0 REV__L1MEf_dup513|chr1:176155312-176156915:+|1.4844844739078713|0.0100697407511101|7.2|151.0|82|2|anti-sense REV__L1MEf_dup513|chr1:176155312-176156915:+|1.4844844739078713|0.0100697407511101|7.2|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_2 3 569.2764282226562 2 569.275521 1136.53649 NaN NaN NaN NaN NaN NaN NaN 45.885 1 49.239 48.739 49.739 3.3534 0 0 0 0.40404 1 9711 9711 5.2307 0 1 + 26789 28658 16775 16784 31177 31177 -0.026318137977341394 LYKWRRKN 8 Unmodified _LYKWRRKN_ 0 0 0 REV__HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|125|1|anti-sense REV__HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|125|1|anti-sense MSMS UPN48_class_I_Rep_3 7 582.3436279296875 2 582.343449 1162.67235 NaN NaN NaN NaN NaN NaN NaN 88.504 1 92.315 91.815 92.815 3.8104 0 0 0 0.40746 1 21008 21008 0.69038 0 1 + 26790 23868 16776 16785 31178 31178 0.09751641827938329 LYKYLQPP 8 Unmodified _LYKYLQPP_ 0 0 0 L1MB3_dup15709|chr19:4946007-4946576:-|1.0337100255063454|0.0114962732207983|6.49|150.0|19|1|anti-sense L1MB3_dup15709|chr19:4946007-4946576:-|1.0337100255063454|0.0114962732207983|6.49|150.0|19|1|anti-sense L1MB3_dup15709|chr19:4946007-4946576:-|1.0337100255063454|0.0114962732207983|6.49|150.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 511.28961181640625 2 511.289485 1020.56442 NaN NaN NaN NaN NaN NaN NaN 26.499 1 30.262 29.762 30.762 3.7624 0 0 0 0.40746 1 3800 3800 0.69038 0 1 26791 10361 16777 16786 31179 31179 0.054958324539938985 LYLAGSSLPCL 11 Unmodified _LYLAGSSLPCL_ 0 0 0 ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|2|intron;ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|5|intron;ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|3|intron;ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|4|intron;ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|1|intron;ENSG00000087157|ENST00000262764|PGS1 ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|2|intron ENSG00000087157.19,PGS1,chr17,+,I10.1,78415028,78419545|35|7.33|2|intron MSMS UPN46_class_I_Rep_3 1 568.8033447265625 2 568.804642 1135.59473 NaN NaN NaN NaN NaN NaN NaN 81.837 1 81.837 81.337 82.337 0 0 0 0 0.30011 1 19350 19350 12.241 0.60036 1 26792 1292 16778 16787 31180 31180 0.03235823056888876 LYLAPYDSR 9 Unmodified _LYLAPYDSR_ 0 0 0 REV__ENSG00000187105|ENST00000553558|HEATR4 REV__ENSG00000187105|ENST00000553558|HEATR4 MSMS UPN48_class_I_Rep_1 5 549.2850952148438 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 45.138 1 48.654 48.154 49.154 3.5162 0 0 0 0.36505 1 8673 8673 7.2892 0 1 + 26793 20919 16779 16788 31181 31181 0.010894390976545765 LYLDAVEYF 9 Unmodified _LYLDAVEYF_ 0 0 0 ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|6|intron;ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|1|intron;ENSG00000119720|ENST00000354366|NRDE2;ENST00000557732.1_1_14:90744682-90745540:-|nuORF ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|6|intron ENSG00000119720.18,NRDE2,chr14,-,I8.1,90301804,90302719|57|4.26|6|intron MULTI-MSMS UPN47_class_I_Rep_3 4 566.7821655273438 2 566.78169 1131.54883 0.46529 0.00026372 -0.021655 -1.2274E-05 0.44364 0.00025144 566.7815649687917 78.134 1.2188 81.415 81.056 82.275 3.2816 378 128 4 0 0 0 0.41259 1 19620 19620 7.2892 0 1 1123100 26794 2293 16780 16789 31182 31182 -0.011684988537354002 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS UPN48_class_I_Rep_1 5 530.768798828125 2 530.769114 1059.52368 0.31791 0.00016873 -0.36379 -0.00019309 -0.04588 -2.4352E-05 530.7686823943023 49.519 0.45646 53.044 52.758 53.214 3.5246 37 28 2 0 0 0 0.13631 1 9986 9986 26.884 0 1 123000 26795 1520 16781 16790 31183 31183 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS UPN48_class_I_Rep_3 7 530.7684326171875 2 530.769114 1059.52368 NaN NaN NaN NaN NaN NaN NaN 49.311 1 52.94 52.44 53.44 3.6291 0 0 0 0.11494 1 9886 9886 21.747 0 1 26796 1520 16781 16790 31184 31184 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS UPN48_class_I_Rep_3 7 530.7689208984375 2 530.769114 1059.52368 NaN NaN NaN NaN NaN NaN NaN 49.46 1 53.089 52.589 53.589 3.6291 0 0 0 0.089203 1 9931 9931 26.884 0 1 26797 1520 16781 16790 31185 31185 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS UPN48_class_I_Rep_3 7 530.769775390625 2 530.769114 1059.52368 NaN NaN NaN NaN NaN NaN NaN 49.593 1 53.222 52.722 53.722 3.6291 0 0 0 0.11494 1 9972 9972 21.747 0 1 26798 1520 16781 16790 31186 31186 -0.0037055365628475556 LYLEKFKAR 9 Unmodified _LYLEKFKAR_ 0 0 0 REV__ENSG00000029725|ENST00000537505|RABEP1 REV__ENSG00000029725|ENST00000537505|RABEP1 MULTI-MSMS UPN46_class_I_Rep_3 1 584.34814453125 2 584.347866 1166.68118 0.3734 0.0002182 0.31564 0.00018444 0.68904 0.00040264 584.3479407248008 34.912 0.038986 34.912 34.9 34.939 0 4 2 2 0 0 0 0.50088 1 6297 6297 0.52476 0 1 2476700 + 26799 17623 16782 16791 31187 31187 0.10450570673742732 LYLENIDEF 9 Unmodified _LYLENIDEF_ 0 0 0 ENST00000532784.5_1_11:74303703-74306426:+|nuORF;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENSG00000077514|ENST00000263681|POLD3 ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENST00000532784.5_1_11:74303703-74306426:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 578.2826538085938 2 578.282054 1154.54956 0.47306 0.00027356 -0.24829 -0.00014358 0.22477 0.00012998 578.2818604849635 77.382 0.60254 80.994 80.812 81.415 3.6116 82 57 2 0 0 0 0.079935 1 18304 18304 38.615 12.347 1 183220 26800 7305 16783 16792 31188 31188 -0.02153704204670248 LYLFFWDF 8 Unmodified _LYLFFWDF_ 0 0 0 ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron MSMS UPN48_class_I_Rep_1 5 575.78466796875 2 575.784036 1149.55352 NaN NaN NaN NaN NaN NaN NaN 62.253 1 65.715 65.215 66.215 3.4625 0 0 0 0.39624 1 13916 13916 9.3474 0 1 26801 3929 16784 16793 31189 31189 -0.015275699202902615 LYLFFWDF 8 Unmodified _LYLFFWDF_ 0 0 0 ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron MULTI-SECPEP UPN48_class_I_Rep_1 5 575.2949829101562 2 575.784036 1149.55352 0.56372 0.00032458 -0.99911 -0.00057527 -0.43539 -0.00025069 575.7833711715319 61.493 0.14497 64.96 64.879 65.024 3.4678 19 13 2 0 0 0 0.72333 1 13676 13676 10.183 0 1 98394 26802 3929 16784 16793 31190 31190 -0.015275699202902615 LYLFFWDF 8 Unmodified _LYLFFWDF_ 0 0 0 ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron ENSG00000162408.11,NOL9,chr1,-,I3.1,6545181,6549255|36|9.83|1|intron MULTI-MATCH UPN48_class_I_Rep_2 6 2 575.784036 1149.55352 0.53785 0.00030969 -1.9349 -0.0011141 -1.397 -0.00080439 575.7829157447612 61.491 0.097664 64.965 64.932 65.029 3.4738 0.0022225 -0.0010094 NaN 10.183 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 124240 26803 3929 16784 16793 -0.015275699202902615 LYLGYCEVLQ 10 Unmodified _LYLGYCEVLQ_ 0 0 0 L1MA5_dup2506|chr9:120630148-120631487:-|2.0017109842214915|0.0543659958764462|5.2|151.0|63|2|anti-sense L1MA5_dup2506|chr9:120630148-120631487:-|2.0017109842214915|0.0543659958764462|5.2|151.0|63|2|anti-sense L1MA5_dup2506|chr9:120630148-120631487:-|2.0017109842214915|0.0543659958764462|5.2|151.0|63|2|anti-sense MSMS UPN48_class_I_Rep_2 6 600.8045654296875 2 600.8021 1199.58965 NaN NaN NaN NaN NaN NaN NaN 44.84 1 48.601 48.101 49.101 3.7617 0 0 0 0.53105 1 8592 8592 1.4819 0.15237 1 26804 9887 16785 16794 31191 31191 -0.0021648080573868356 LYLHMYIY 8 Unmodified _LYLHMYIY_ 0 0 0 L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|40|3|anti-sense L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|40|3|anti-sense L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|40|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2844848632812 2 558.283346 1114.55214 0.36864 0.0002058 1.5592 0.00087048 1.9279 0.0010763 558.2842296487729 65.667 0.34573 68.923 68.7 69.046 3.2556 27 21 2 0 0 0 0.82752 1 15722 15722 32.454 0 1 73797 26805 10853 16786 16795 31192 31192 -0.0005552728068778379 LYLHVYVLT 9 Unmodified _LYLHVYVLT_ 0 0 0 ENST00000261168.8_1_12:14653445-14653610:+|nuORF ENST00000261168.8_1_12:14653445-14653610:+|nuORF ENST00000261168.8_1_12:14653445-14653610:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.8230590820312 2 560.823692 1119.63283 0.047816 2.6816E-05 -0.73834 -0.00041408 -0.69052 -0.00038726 560.8232428038832 19.123 1.0067 22.513 21.997 23.004 3.3898 189 105 2 0 0 0 0.48846 1 1788 1788 1.8442 0 1 99939 26806 5955 16787 16796 31193 31193 0.07780077033839916 LYLHVYVLT 9 Unmodified _LYLHVYVLT_ 0 0 0 ENST00000261168.8_1_12:14653445-14653610:+|nuORF ENST00000261168.8_1_12:14653445-14653610:+|nuORF ENST00000261168.8_1_12:14653445-14653610:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.8226928710938 2 560.823692 1119.63283 -0.3478 -0.00019505 -0.53315 -0.000299 -0.88095 -0.00049406 560.8232932836396 19.336 0.88772 22.688 22.258 23.145 3.3514 167 89 2 0 0 0 0.48643 1 1855 1855 2.0598 0.40713 1 91818 26807 5955 16787 16796 31194 31194 0.07780077033839916 LYLKVCFL 8 Unmodified _LYLKVCFL_ 0 0 0 HAL1M8_dup2056|chr20:61991624-61993492:+|1.0760564848840526|0.1305529705792626|3.04|150.0|61|1|anti-sense HAL1M8_dup2056|chr20:61991624-61993492:+|1.0760564848840526|0.1305529705792626|3.04|150.0|61|1|anti-sense HAL1M8_dup2056|chr20:61991624-61993492:+|1.0760564848840526|0.1305529705792626|3.04|150.0|61|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.7913818359375 2 499.790807 997.56706 NaN NaN NaN NaN NaN NaN NaN 23.862 1 27.592 27.092 28.092 3.7298 0 0 0 0.40404 1 3022 3022 5.2307 0 1 26808 7943 16788 16797 31195 31195 0.06817964587287406 LYLLRCTCF 9 Unmodified _LYLLRCTCF_ 0 0 0 REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 566.2877807617188 2 566.288105 1130.56166 0.48362 0.00027387 1.0556 0.00059777 1.5392 0.00087164 566.2887277896856 77.726 0.66319 81.348 81.181 81.845 3.6222 171 67 4 0 0 0 0.12799 1 18528 18528 28.487 28.487 1 1496300 + 26809 22723 16789 16798 31196 31196 0.001599177331854662 LYLLRCTCF 9 Unmodified _LYLLRCTCF_ 0 0 0 REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF REV__ENST00000508394.6_1_12:54575540-54575678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 566.2891845703125 2 566.288105 1130.56166 0.48657 0.00027554 1.2045 0.00068211 1.6911 0.00095765 566.2888511930153 77.745 0.64905 81.347 81.163 81.812 3.6016 196 70 4 0 0 0 0.090595 1 18475 18475 36.044 36.044 1 946340 + 26810 22723 16789 16798 31197 31197 0.001599177331854662 LYLPEYVW 8 Unmodified _LYLPEYVW_ 0 0 0 MER65A_dup768|chr8:129899583-129900020:-|2.2022517934700403|0.0398883103230942|5.79|151.0|2|1|sense MER65A_dup768|chr8:129899583-129900020:-|2.2022517934700403|0.0398883103230942|5.79|151.0|2|1|sense MER65A_dup768|chr8:129899583-129900020:-|2.2022517934700403|0.0398883103230942|5.79|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 541.7819213867188 2 541.781493 1081.54843 NaN NaN NaN NaN NaN NaN NaN 28.768 1 32.534 32.034 33.034 3.7662 0 0 0 0.40738 1 4477 4477 0.79363 0 1 26811 16173 16790 16799 31198 31198 0.010921262170768387 LYLPEYVW 8 Unmodified _LYLPEYVW_ 0 0 0 MER65A_dup768|chr8:129899583-129900020:-|2.2022517934700403|0.0398883103230942|5.79|151.0|2|1|sense MER65A_dup768|chr8:129899583-129900020:-|2.2022517934700403|0.0398883103230942|5.79|151.0|2|1|sense MER65A_dup768|chr8:129899583-129900020:-|2.2022517934700403|0.0398883103230942|5.79|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 541.7911987304688 2 541.781493 1081.54843 -0.21562 -0.00011682 -0.45274 -0.00024529 -0.66836 -0.00036211 541.7811657899888 29.189 0.35472 32.512 32.332 32.686 3.3235 36 28 2 0 0 0 0.82752 1 4646 4646 0.79363 0 1 55208 26812 16173 16790 16799 31199 31199 0.010921262170768387 LYLPLPHFY 9 Unmodified _LYLPLPHFY_ 0 0 0 L1M1_dup945|chr2:97498899-97500000:+|2.139280697602223|0.4738816047615796|2.17|151.0|71|2|anti-sense L1M1_dup945|chr2:97498899-97500000:+|2.139280697602223|0.4738816047615796|2.17|151.0|71|2|anti-sense L1M1_dup945|chr2:97498899-97500000:+|2.139280697602223|0.4738816047615796|2.17|151.0|71|2|anti-sense MSMS UPN48_class_I_Rep_1 5 581.8169555664062 2 581.81841 1161.62227 NaN NaN NaN NaN NaN NaN NaN 66.167 1 69.618 69.118 70.118 3.4516 0 0 0 0.381 1 15110 15110 5.2307 0 1 26813 8656 16791 16800 31200 31200 0.04792094379422451 LYLRNIKY 8 Unmodified _LYLRNIKY_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.8215942382812 2 541.821484 1081.62842 0.39501 0.00021402 -0.075672 -4.1001E-05 0.31934 0.00017302 541.8213553482306 45.426 1.4497 48.942 48.534 49.983 3.5162 316 101 4 0 0 0 0.82752 1 8968 8968 12.532 0 1 4108100 + 26814 32695 16792 16801 31201 31201 0.09086612610917655 LYLRNIKY 8 Unmodified _LYLRNIKY_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.821533203125 2 541.821484 1081.62842 0.39705 0.00021513 -0.13478 -7.3027E-05 0.26227 0.0001421 541.8213342478908 45.162 1.6703 48.92 48.395 50.065 3.7579 370 122 4 0 0 0 0.82752 1 8866 8866 28.487 0 1 3710100 + 26815 32695 16792 16801 31202 31202 0.09086612610917655 LYLRNIKY 8 Unmodified _LYLRNIKY_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.8217163085938 2 541.821484 1081.62842 0.38924 0.0002109 -0.25611 -0.00013877 0.13313 7.213E-05 541.8212626223682 46.38 0.22226 50.129 50.056 50.279 3.7494 24 13 2 0 0 0 0.82752 1 9098 9098 7.9102 0 1 80878 + 26816 32695 16792 16801 31203 31203 0.09086612610917655 LYLRNIKY 8 Unmodified _LYLRNIKY_ 0 0 0 REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense REV__Tigger2b_Pri_dup1779|chr15:101181766-101182486:-|1.4831491670308434|0.2384258656673741|2.64|151.0|57|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.8212890625 2 541.821484 1081.62842 0.44472 0.00024096 -0.14762 -7.9981E-05 0.29711 0.00016098 541.8213335547063 45.388 1.8061 49.025 48.468 50.274 3.6369 332 121 4 0 0 0 0.82752 1 8910 8910 7.9102 0 1 4054400 + 26817 32695 16792 16801 31204 31204 0.09086612610917655 LYLRQVIGF 9 Unmodified _LYLRQVIGF_ 0 0 0 nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B MSMS UPN48_class_I_Rep_1 5 554.8275756835938 2 554.829309 1107.64407 NaN NaN NaN NaN NaN NaN NaN 41.319 1 44.825 44.325 45.325 3.506 0 0 0 0.38299 1 7517 7517 4.756 0 1 26818 16706 16793 16802 31205 31205 0.09454899127990757 LYLSFSATLL 10 Unmodified _LYLSFSATLL_ 0 0 0 REV__MLT1A0_dup7700|chr5:178218372-178218716:+|3.3578982966221416|0.4908243920076851|2.77|151.0|13|1|anti-sense REV__MLT1A0_dup7700|chr5:178218372-178218716:+|3.3578982966221416|0.4908243920076851|2.77|151.0|13|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 564.359130859375 2 564.320983 1126.62741 0.45277 0.00025551 0.43005 0.00024268 0.88282 0.00049819 564.3212096565748 63.164 0.2528 66.673 66.53 66.783 3.5091 23 19 2 0 0 0 0.84575 1 14060 14060 19.257 2.1441 1 74477 + 26819 31601 16794 16803 31206 31206 0.06916353451379109 LYLSTMERS 9 Unmodified _LYLSTMERS_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS UPN48_class_I_Rep_1 5 550.2886352539062 2 550.276249 1098.53795 0.49166 0.00027055 0.22678 0.00012479 0.71844 0.00039534 550.7796987224948 51.688 0.088211 55.211 55.176 55.264 3.5227 10 7 2 0 0 0 0.41259 1 10700 10700 7.2892 0.18751 1 178320 26820 1092 16795 16804 31207 31207 -0.007382244996506415 LYLVLIPGSF 10 Unmodified _LYLVLIPGSF_ 0 0 0 L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|137|3|anti-sense L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|137|3|anti-sense L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|137|3|anti-sense MSMS UPN48_class_I_Rep_2 6 561.3344116210938 2 561.333893 1120.65323 NaN NaN NaN NaN NaN NaN NaN 73.128 1 76.693 76.193 77.193 3.5645 0 0 0 0.53105 1 17158 17158 14.838 1.7958 1 26821 12600 16796 16805 31208 31208 0.09773247693669873 LYLYCHELS 9 Unmodified _LYLYCHELS_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS UPN47_class_I_Rep_2 3 571.2725830078125 2 570.773342 1139.53213 0.045867 2.618E-05 -2.001 -0.0011421 -1.9551 -0.0011159 571.2732871827895 34.243 0.46102 37.683 37.45 37.911 3.4398 53 31 2 0 0 0 0.48643 1 6206 6206 2.0598 0 1 75651 26822 5362 16797 16806 31209 31209 -0.032053230113206155 LYLYLERH 8 Unmodified _LYLYLERH_ 0 0 0 L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|1|1|sense L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|1|1|sense L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 553.8011474609375 2 553.803291 1105.59203 NaN NaN NaN NaN NaN NaN NaN 31.63 1 35.332 34.832 35.832 3.7015 0 0 0 0.40472 1 4707 4707 4.3292 0 1 26823 11685 16798 16807 31210 31210 0.0434573571421879 LYLYPPTE 8 Unmodified _LYLYPPTE_ 0 0 0 L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|66|1|anti-sense L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|66|1|anti-sense L1MEd_dup15194|chr11:71467587-71469165:+|1.1570246634870174|0.0711683165009926|4.02|150.0|66|1|anti-sense MSMS UPN48_class_I_Rep_1 5 498.2580871582031 2 498.257851 994.501149 NaN NaN NaN NaN NaN NaN NaN 33.241 1 36.761 36.261 37.261 3.5201 0 0 0 0.40738 1 5159 5159 0.79363 0 1 26824 13176 16799 16808 31211 31211 0.0036784694609650614 LYMETKERIE 10 Unmodified _LYMETKERIE_ 0 0 0 nc|ENSG00000183347|Q6ZN66-2|GBP6;ENSG00000183347|ENST00000370456|GBP6 nc|ENSG00000183347|Q6ZN66-2|GBP6 nc|ENSG00000183347|Q6ZN66-2|GBP6 MULTI-SECPEP UPN48_class_I_Rep_2 6 437.27569580078125 3 437.891956 1310.65404 0.15221 6.6649E-05 -1.4727 -0.00064486 -1.3204 -0.00057821 438.22503255390666 63.987 0.52945 67.462 67.16 67.69 3.4743 49 37 2 0 0 0 0.84575 1 14393 14393 5.7834 1.3773 1 137150 26825 4994 16800 16809 31212 31212 0.011136742803728339 LYMFSSNDK 9 Unmodified _LYMFSSNDK_ 0 0 0 ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 MSMS UPN48_class_I_Rep_3 7 552.7536010742188 2 552.755149 1103.49575 NaN NaN NaN NaN NaN NaN NaN 62.109 1 65.619 65.119 66.119 3.5104 0 0 0 0.32573 1 13781 13781 9.3831 0.78985 1 26826 1871 16801 16810 31213 31213 -0.051861999080074384 LYMFWRKKS 9 Unmodified _LYMFWRKKS_ 0 0 0 REV__L1MEc_dup12911|chr11:77783853-77785289:-|1.719985029875749|0.0174264750500213|6.62|151.0|68|1|anti-sense REV__L1MEc_dup12911|chr11:77783853-77785289:-|1.719985029875749|0.0174264750500213|6.62|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_2 6 629.8432006835938 2 629.841894 1257.66923 NaN NaN NaN NaN NaN NaN NaN 53.623 1 57.233 56.733 57.733 3.6098 0 0 0 0.39326 1 11257 11257 2.3027 0.65011 1 + 26827 28368 16802 16811 31214 31214 0.05070630658906339 LYMGKCLL 8 Unmodified _LYMGKCLL_ 0 0 0 REV__L1M5_dup2761|chr1:175958706-175959613:+|1.2260831228194753|0.0905879401425073|3.76|151.0|34|3|sense REV__L1M5_dup2761|chr1:175958706-175959613:+|1.2260831228194753|0.0905879401425073|3.76|151.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 470.75439453125 2 470.753367 939.492181 NaN NaN NaN NaN NaN NaN NaN 72.271 1 75.797 75.297 76.297 3.5266 0 0 0 0.40604 1 16836 16836 2.5775 0.51773 1 + 26828 24646 16803 16812 31215 31215 0.02001458784411625 LYMPQKKQE 9 Unmodified _LYMPQKKQE_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|111|2|sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|111|2|sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|111|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.8095092773438 2 582.807716 1163.60088 0.51216 0.00029849 0.41475 0.00024172 0.92692 0.00054021 582.8076457302915 64.906 0.71176 68.385 68.054 68.766 3.4792 69 50 2 0 0 0 0.41259 1 14660 14660 7.2892 0 1 155730 26829 8012 16804 16813 31216 31216 0.025623412883760466 LYMPRIAF 8 Unmodified _LYMPRIAF_ 0 0 0 REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF MSMS UPN48_class_I_Rep_1 5 505.7782897949219 2 505.778231 1009.54191 NaN NaN NaN NaN NaN NaN NaN 50.837 1 54.362 53.862 54.862 3.5246 0 0 0 0.40581 1 10423 10423 2.8892 0 1 + 26830 19919 16805 16814 31217 31217 0.037519097847280136 LYNAKPSPIY 10 Unmodified _LYNAKPSPIY_ 0 0 0 REV__L1MEd_dup5178|chr4:39017479-39018738:-|1.5130625431778402|0.0073671882003451|7.68|151.0|67|1|anti-sense REV__L1MEd_dup5178|chr4:39017479-39018738:-|1.5130625431778402|0.0073671882003451|7.68|151.0|67|1|anti-sense MSMS UPN48_class_I_Rep_1 5 583.3171997070312 2 583.316232 1164.61791 NaN NaN NaN NaN NaN NaN NaN 60.105 1 63.579 63.079 64.079 3.4737 0 0 0 0.53105 1 13265 13265 5.2969 0 1 + 26831 28576 16806 16815 31218 31218 0.042185851658587126 LYNKKFKR 8 Unmodified _LYNKKFKR_ 0 0 0 REV__HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|53|3|sense REV__HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|53|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8347778320312 2 548.834926 1095.6553 -0.024928 -1.3681E-05 -0.080058 -4.3939E-05 -0.10499 -5.762E-05 548.8347273784382 22.813 0.072733 22.813 22.78 22.853 0 11 7 2 0 0 0 0.82752 1 2769 2769 0.69038 0 1 41887 + 26832 23446 16807 16816 31219 31219 0.11129721222141598 LYNLLTGFF 9 Unmodified _LYNLLTGFF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|80|1|anti-sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|80|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.2973022460938 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 39.979 1 43.483 42.983 43.983 3.5048 0 0 0 0.37476 1 7121 7121 6.7232 1.9672 1 + 26833 27188 16808 16817 31220 31220 0.03515815108403331 LYNLLTGFF 9 Unmodified _LYNLLTGFF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|80|1|anti-sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|80|1|anti-sense MSMS UPN48_class_I_Rep_3 7 544.2962036132812 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 39.744 1 43.4 42.9 43.9 3.6557 0 0 0 0.37476 1 6989 6989 6.7232 2.3939 1 + 26834 27188 16808 16817 31221 31221 0.03515815108403331 LYNLLTGFF 9 Unmodified _LYNLLTGFF_ 0 0 0 REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|80|1|anti-sense REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|80|1|anti-sense MSMS UPN48_class_I_Rep_3 7 544.2950439453125 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 39.847 1 43.503 43.003 44.003 3.6557 0 0 0 0.37476 1 7015 7015 6.7232 2.7788 1 + 26835 27188 16808 16817 31222 31222 0.03515815108403331 LYNMYCYLKS 10 Unmodified _LYNMYCYLKS_ 0 0 0 L1MC5a_dup8990|chr9:90875583-90875989:-|1.6623482936906748|0.017088654654348|6.6|151.0|5|1|sense L1MC5a_dup8990|chr9:90875583-90875989:-|1.6623482936906748|0.017088654654348|6.6|151.0|5|1|sense L1MC5a_dup8990|chr9:90875583-90875989:-|1.6623482936906748|0.017088654654348|6.6|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 433.20330810546875 3 433.203365 1296.58827 -0.04621 -2.0018E-05 0.048032 2.0808E-05 0.0018216 7.8914E-07 433.20334557580145 41.511 1.4049 45.017 44.518 45.923 3.506 364 134 4 0 0 0 0.50947 2 7566 7566;7602 10.899 0 1 1179300 26836 11773 16809 16818 31223;31224 31223 -0.0481643816617634 LYNMYCYLKS 10 Unmodified _LYNMYCYLKS_ 0 0 0 L1MC5a_dup8990|chr9:90875583-90875989:-|1.6623482936906748|0.017088654654348|6.6|151.0|5|1|sense L1MC5a_dup8990|chr9:90875583-90875989:-|1.6623482936906748|0.017088654654348|6.6|151.0|5|1|sense L1MC5a_dup8990|chr9:90875583-90875989:-|1.6623482936906748|0.017088654654348|6.6|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 433.20306396484375 3 433.203365 1296.58827 0.037006 1.6031E-05 -0.048199 -2.088E-05 -0.011193 -4.8487E-06 433.2032876361928 41.178 1.5274 44.929 44.436 45.963 3.7509 411 160 4 0 0 0 0.50947 3 7432 7432;7477;7552 10.899 0 1 887730 26837 11773 16809 16818 31225;31226;31227 31225 -0.0481643816617634 LYNSFQFA 8 Unmodified _LYNSFQFA_ 0 0 0 L1ME2z_dup385|chr1:206708334-206709132:-|3.324900325403711|0.044965395786139|6.21|151.0|29|3|sense L1ME2z_dup385|chr1:206708334-206709132:-|3.324900325403711|0.044965395786139|6.21|151.0|29|3|sense L1ME2z_dup385|chr1:206708334-206709132:-|3.324900325403711|0.044965395786139|6.21|151.0|29|3|sense MSMS UPN48_class_I_Rep_2 6 494.76605224609375 2 495.239993 988.465432 NaN NaN NaN NaN NaN NaN NaN 51.386 1 55.053 54.553 55.553 3.6679 0 0 0 0.40404 1 10587 10587 5.2307 0 1 26838 12564 16810 16819 31228 31228 -0.029261905109024156 LYNSTFFV 8 Unmodified _LYNSTFFV_ 0 0 0 REV__LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|44|3|sense REV__LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.2666931152344 2 495.750193 989.485833 0.18016 8.9317E-05 0.1661 8.2343E-05 0.34626 0.00017166 495.75022874135504 77.892 0.39798 81.321 81.066 81.464 3.4289 66 38 2 0 0 0 0.82752 1 19289 19289 7.2892 0 1 95990 + 26839 30766 16811 16820 31229 31229 -0.009330198510838272 LYPDWELNR 9 Unmodified _LYPDWELNR_ 0 0 0 REV__ENSG00000143195|ENST00000271417|ILDR2 REV__ENSG00000143195|ENST00000271417|ILDR2 MULTI-MSMS UPN47_class_I_Rep_3 4 603.30029296875 2 603.301113 1204.58767 -0.24044 -0.00014506 -0.060954 -3.6774E-05 -0.3014 -0.00018183 603.3009595109569 26.02 0.74556 29.368 29.126 29.872 3.3478 115 70 2 0 0 0 0.49026 1 3748 3748 1.6526 0 1 126920 + 26840 19431 16812 16821 31230 31230 -0.006437734993596678 LYPEVFEKF 9 Unmodified _LYPEVFEKF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 586.8070678710938 2 586.305332 1170.59611 0.503 0.00029491 0.026073 1.5287E-05 0.52907 0.0003102 586.3052578568232 66.328 0.63663 69.815 69.553 70.19 3.4866 85 47 2 0 0 0 0.19147 3 15130 15130;15168;15209 21.537 2.28 1 231680 26841 7210 16813 16822 31231;31232;31233 31231 0.01763780417286398 LYPEVFEKF 9 Unmodified _LYPEVFEKF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 586.305908203125 2 586.305332 1170.59611 0.5455 0.00031983 0.18968 0.00011121 0.73518 0.00043104 586.3053349023655 66.245 0.73257 69.753 69.403 70.136 3.5077 108 55 3 0 0 0 0.23293 3 15028 14992;15028;15066 18.146 3.3081 1 194730 26842 7210 16813 16822 31234;31235;31236 31235 0.01763780417286398 LYPEVFEKF 9 Unmodified _LYPEVFEKF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 586.305332 1170.59611 0.4898 0.00028717 0.1058 6.2034E-05 0.59561 0.00034921 586.3053583974272 66.583 0.62973 70.035 69.724 70.354 3.4516 0.16731 -3.8575E-06 NaN 21.537 90 41 3 NaN NaN NaN NaN 0 NaN NaN 0 233290 26843 7210 16813 16822 0.01763780417286398 LYPGRLAI 8 Unmodified _LYPGRLAI_ 0 0 0 REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 451.77587890625 2 451.776545 901.538538 -0.54057 -0.00024422 -0.15492 -6.9989E-05 -0.69549 -0.00031421 451.7763536103472 39.339 0.81983 42.718 42.359 43.179 3.3785 59 46 2 0 0 0 0.82752 1 7655 7655 10.183 0 1 77578 + 26844 22262 16814 16823 31237 31237 0.08382983002354649 LYPGTNGVNKY 11 Unmodified _LYPGTNGVNKY_ 0 0 0 L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|12|1|sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|12|1|sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 613.3152465820312 2 613.31422 1224.61389 0.49212 0.00030183 -0.22464 -0.00013777 0.26749 0.00016405 613.3141092736018 55.831 0.6267 59.333 59.017 59.643 3.5014 73 43 2 0 0 0 0.28469 1 11949 11949 17.113 0.1706 1 220700 26845 15124 16815 16824 31238 31238 0.010564956721509589 LYPIHDLRI 9 Unmodified _LYPIHDLRI_ 0 0 0 L1MB5_dup6800|chr13:72938181-72939226:-|2.0721747545094567|0.0216645104763568|6.58|151.0|74|3|anti-sense L1MB5_dup6800|chr13:72938181-72939226:-|2.0721747545094567|0.0216645104763568|6.58|151.0|74|3|anti-sense L1MB5_dup6800|chr13:72938181-72939226:-|2.0721747545094567|0.0216645104763568|6.58|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_3 7 570.3306884765625 2 570.332216 1138.64988 NaN NaN NaN NaN NaN NaN NaN 48.924 1 52.553 52.053 53.053 3.6291 0 0 0 0.37692 1 9766 9766 6.2058 0 1 26846 10638 16816 16825 31239 31239 0.08609997639655376 LYPLTNYTF 9 Unmodified _LYPLTNYTF_ 0 0 0 ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21 ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENST00000567110.1_1_16:56481699-56485159:-|nuORF MSMS UPN48_class_I_Rep_1 5 566.2885131835938 2 566.289682 1130.56481 NaN NaN NaN NaN NaN NaN NaN 78.369 1 81.891 81.391 82.391 3.5221 0 0 0 0.16861 1 18689 18689 18.373 9.6277 1 26847 4286 16817 16826 31240 31240 0.00475207383169618 LYPSAKYSSS 10 Unmodified _LYPSAKYSSS_ 0 0 0 REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|37|1|anti-sense REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.7734985351562 2 551.774396 1101.53424 NaN NaN NaN NaN NaN NaN NaN 29.54 1 29.54 29.04 30.04 0 0 0 0 0.53105 1 4691 4691 1.4819 0.28856 1 + 26848 27121 16818 16827 31241 31241 -0.012465710018659593 LYPSEYNIF 9 Unmodified _LYPSEYNIF_ 0 0 0 nc|ENSG00000213471|A6NNM8-2|TTLL13;ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13 nc|ENSG00000213471|A6NNM8-2|TTLL13 nc|ENSG00000213471|A6NNM8-2|TTLL13 MULTI-MSMS UPN48_class_I_Rep_3 7 573.2803344726562 2 573.279315 1144.54408 0.51294 0.00029406 1.3505 0.0007742 1.8634 0.0010683 573.2800368576835 77.28 0.79124 80.881 80.602 81.394 3.6016 141 70 3 0 0 0 0.16559 1 18323 18323 24.021 4.7636 1 400290 26849 5592 16819 16828 31242 31242 -0.022413829964989418 LYPSFLERF 9 Unmodified _LYPSFLERF_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense MSMS UPN48_class_I_Rep_3 7 586.30908203125 2 586.310949 1170.60735 NaN NaN NaN NaN NaN NaN NaN 52.457 1 56.055 55.555 56.555 3.5979 0 0 0 0.2088 1 10835 10835 15.847 0 1 26850 8514 16820 16829 31243 31243 0.02886602511421188 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS UPN48_class_I_Rep_1 5 555.2978515625 2 555.297507 1108.58046 0.50685 0.00028145 0.37588 0.00020872 0.88272 0.00049017 555.2973748079088 81.046 0.55058 84.608 84.422 84.972 3.5624 105 66 2 0 0 0 0.0058741 3 19332 19300;19332;19374 76.825 34.985 1 282880 26851 1589 16821 16830 31244;31245;31246 31245 0.030514939002614483 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS UPN48_class_I_Rep_2 6 555.2974853515625 2 555.297507 1108.58046 0.49211 0.00027327 0.031495 1.7489E-05 0.52361 0.00029076 555.2971920887264 80.948 0.18927 84.605 84.501 84.691 3.6567 45 24 3 0 0 0 0.013215 1 19208 19208 67.838 33.436 1 225640 26852 1589 16821 16830 31247 31247 0.030514939002614483 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.2975463867188 2 555.297507 1108.58046 0.43268 0.00024027 0.0053008 2.9435E-06 0.43798 0.00024321 555.2970440372125 81.013 0.16463 84.677 84.576 84.741 3.6635 35 19 3 0 0 0 0.04399 1 19173 19173 51.415 23.786 1 313450 26853 1589 16821 16830 31248 31248 0.030514939002614483 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MSMS UPN48_class_I_Rep_3 7 555.2973022460938 2 555.297507 1108.58046 NaN NaN NaN NaN NaN NaN NaN 80.872 1 84.536 84.036 85.036 3.6635 0 0 0 0.027993 1 19138 19138 47.594 13.492 1 26854 1589 16821 16830 31249 31249 0.030514939002614483 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 555.297507 1108.58046 0.43159 0.00023966 0.073826 4.0995E-05 0.50541 0.00028065 555.2972644683032 81.122 0.27345 84.786 84.727 85.001 3.6635 0.11949 -0.00018095 NaN 76.825 50 36 2 NaN NaN NaN NaN 0 NaN NaN 0 232890 26855 1589 16821 16830 0.030514939002614483 LYPTTAEYTF 10 Unmodified _LYPTTAEYTF_ 0 0 0 L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|28|2|sense;L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|9|1|sense L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|28|2|sense L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|28|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.291015625 2 603.289879 1204.56521 0.46453 0.00028025 -0.27835 -0.00016792 0.18618 0.00011232 603.2895698922825 54.768 0.65884 58.276 57.899 58.558 3.5082 119 46 3 0 0 0 0.51565 1 11542 11542 10.074 0 1 579550 26856 11098 16822 16831 31250 31250 -0.028894176876292477 LYPVCHVRNL 10 Unmodified _LYPVCHVRNL_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS UPN48_class_I_Rep_3 7 607.330078125 2 607.32915 1212.64375 0.47402 0.00028789 0.3867 0.00023485 0.86072 0.00052274 607.3293206096004 47.67 0.83894 51.304 51.069 51.908 3.6339 113 61 2 0 0 0 0.56273 1 9324 9324 1.6526 0.32309 1 364030 26857 1494 16823 16832 31251 31251 0.0459315613650233 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS UPN48_class_I_Rep_1 5 559.2791748046875 2 558.78985 1115.56515 0.61312 0.00034261 -0.42719 -0.00023871 0.18593 0.0001039 558.7893911902321 62.223 0.68267 65.687 65.309 65.992 3.4637 96 54 2 0 0 0 0.066364 1 13856 13856 41.956 5.8285 1 206330 26858 4281 16824 16833 31252 31252 0.011986271030536955 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS UPN48_class_I_Rep_3 7 558.7891235351562 2 558.78985 1115.56515 0.41996 0.00023467 -0.10512 -5.874E-05 0.31484 0.00017593 558.7894693846345 61.975 0.61955 65.486 65.095 65.715 3.5104 123 54 3 0 0 0 0.12096 1 13785 13785 29.841 4.4413 1 189910 26859 4281 16824 16833 31253 31253 0.011986271030536955 LYQDKFPFF 9 Unmodified _LYQDKFPFF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN48_class_I_Rep_2 6 602.8074340820312 2 602.8055 1203.59645 NaN NaN NaN NaN NaN NaN NaN 74.444 1 78.034 77.534 78.534 3.59 0 0 0 0.27207 1 17519 17519 12.241 4.0851 1 26860 3340 16825 16834 31254 31254 0.002792001371290098 LYQDRFDYL 9 Unmodified _LYQDRFDYL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS UPN48_class_I_Rep_1 5 616.8017578125 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 58.251 1 61.738 61.238 62.238 3.487 0 0 0 0.32573 1 12693 12693 9.3831 0 1 26861 568 16826 16835 31255 31255 -0.019191932191688466 LYQDRFDYL 9 Unmodified _LYQDRFDYL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS UPN48_class_I_Rep_2 6 616.8010864257812 2 616.800946 1231.58734 0.58553 0.00036116 0.15664 9.6614E-05 0.74217 0.00045777 616.8010506609127 58.215 0.30778 61.714 61.577 61.885 3.4987 24 17 2 0 0 0 0.20317 1 12673 12673 20.415 5.1661 1 80302 26862 568 16826 16835 31256 31256 -0.019191932191688466 LYQDRFDYL 9 Unmodified _LYQDRFDYL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS UPN48_class_I_Rep_3 7 616.8017578125 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 58.088 1 61.62 61.12 62.12 3.5317 0 0 0 0.27207 1 12556 12556 12.241 2.8575 1 26863 568 16826 16835 31257 31257 -0.019191932191688466 LYQEELSY 8 Unmodified _LYQEELSY_ 0 0 0 REV__ENSG00000266338|ENST00000581897|NBPF15 REV__ENSG00000266338|ENST00000581897|NBPF15 MULTI-MSMS UPN46_class_I_Rep_3 1 523.2499389648438 2 522.747847 1043.48114 0.28985 0.00015152 0.25891 0.00013534 0.54876 0.00028686 522.7476549014879 47.21 0.4227 47.21 46.932 47.355 0 58 42 2 0 0 0 0.82752 1 9726 9726 9.3474 0 1 138530 + 26864 19944 16827 16836 31258 31258 -0.03885948784500215 LYQELSVPH 9 Unmodified _LYQELSVPH_ 0 0 0 REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 543.28466796875 2 543.284931 1084.55531 0.39961 0.0002171 -0.14906 -8.0981E-05 0.25056 0.00013612 543.2847785444277 48.756 0.4416 52.473 52.14 52.582 3.7175 38 32 2 0 0 0 0.46869 1 9715 9715 3.9444 0.3479 1 89404 + 26865 23175 16828 16837 31259 31259 0.0164143909764789 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF nc|ENSG00000178982|Q9UBQ5-2|EIF3K nc|ENSG00000178982|Q9UBQ5-2|EIF3K MSMS UPN48_class_I_Rep_1 5 573.78466796875 2 573.784567 1145.55458 NaN NaN NaN NaN NaN NaN NaN 85.783 1 89.389 88.889 89.889 3.6059 0 0 0 0.13551 1 20529 20529 20.454 8.8133 1 26866 4839 16829 16838 31260 31260 -0.012373555513931933 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF nc|ENSG00000178982|Q9UBQ5-2|EIF3K nc|ENSG00000178982|Q9UBQ5-2|EIF3K MULTI-MSMS UPN48_class_I_Rep_2 6 573.7850341796875 2 573.784567 1145.55458 0.48014 0.0002755 -0.2469 -0.00014167 0.23324 0.00013383 573.7843876301398 85.826 0.4678 89.532 89.19 89.657 3.7058 91 50 2 0 0 0 0.056917 1 20378 20378 46.021 27.886 1 156510 26867 4839 16829 16838 31261 31261 -0.012373555513931933 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF nc|ENSG00000178982|Q9UBQ5-2|EIF3K nc|ENSG00000178982|Q9UBQ5-2|EIF3K MULTI-MSMS UPN48_class_I_Rep_3 7 573.7848510742188 2 573.784567 1145.55458 0.49465 0.00028382 -0.010708 -6.1443E-06 0.48394 0.00027768 573.7844949549045 85.748 0.51752 89.518 89.25 89.767 3.7701 91 61 2 0 0 0 0.28552 1 20295 20295 14.838 10.082 1 130820 26868 4839 16829 16838 31262 31262 -0.012373555513931933 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF nc|ENSG00000178982|Q9UBQ5-2|EIF3K nc|ENSG00000178982|Q9UBQ5-2|EIF3K MULTI-MATCH UPN48_class_I_Rep_1 5 2 573.784567 1145.55458 0.41516 0.00023821 -0.23733 -0.00013617 0.17784 0.00010204 573.7844589876242 85.959 0.19357 89.571 89.512 89.705 3.613 0.031187 -0.00013286 NaN 46.021 26 20 2 NaN NaN NaN NaN 0 NaN NaN 0 104620 26869 4839 16829 16838 -0.012373555513931933 LYQFQFQE 8 Unmodified _LYQFQFQE_ 0 0 0 ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2 ENSG00000130234|ENST00000252519|ACE2 ENSG00000130234|ENST00000252519|ACE2 MSMS UPN47_class_I_Rep_1 2 551.7620239257812 2 551.763832 1101.51311 NaN NaN NaN NaN NaN NaN NaN 30.391 1 34.136 33.636 34.636 3.7449 0 0 0 0.40604 1 4963 4963 2.5775 0 1 26870 2648 16830 16839 31263 31263 -0.03358536310724958 LYQFQFQE 8 Unmodified _LYQFQFQE_ 0 0 0 ENSG00000130234|ENST00000252519|ACE2;nc|ENSG00000130234|Q9BYF1-3|ACE2 ENSG00000130234|ENST00000252519|ACE2 ENSG00000130234|ENST00000252519|ACE2 MSMS UPN47_class_I_Rep_2 3 551.7617797851562 2 551.763832 1101.51311 NaN NaN NaN NaN NaN NaN NaN 30.645 1 34.127 33.627 34.627 3.4821 0 0 0 0.40604 1 5080 5080 2.5775 0 1 26871 2648 16830 16839 31264 31264 -0.03358536310724958 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS UPN48_class_I_Rep_1 5 588.8060913085938 2 588.806031 1175.59751 0.56209 0.00033096 -0.086009 -5.0643E-05 0.47608 0.00028032 588.805838523907 59.833 0.7291 63.313 62.988 63.717 3.4801 134 56 3 0 0 0 0.081756 5 13163 13104;13109;13125;13163;13215 38.176 12.776 1 383520 26872 2142 16831 16840 31265;31266;31267;31268;31269 31268 0.016734145060127048 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS UPN48_class_I_Rep_2 6 588.8065185546875 2 588.806031 1175.59751 0.55978 0.0003296 -0.034563 -2.0351E-05 0.52522 0.00030925 588.8058929790495 59.712 0.78613 63.199 62.874 63.66 3.4868 129 61 3 0 0 0 0.11355 4 13116 13101;13116;13123;13155 31.268 9.7314 1 472010 26873 2142 16831 16840 31270;31271;31272;31273 31271 0.016734145060127048 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS UPN48_class_I_Rep_3 7 588.8060302734375 2 588.806031 1175.59751 0.4809 0.00028315 0.12729 7.4952E-05 0.60819 0.00035811 588.8059480662946 59.6 0.70187 63.116 62.774 63.476 3.5169 132 54 3 0 0 0 0.057664 4 13017 12978;13017;13050;13057 45.7 13.394 1 297260 26874 2142 16831 16840 31274;31275;31276;31277 31275 0.016734145060127048 LYQIIESIY 9 Unmodified _LYQIIESIY_ 0 0 0 REV__L1MA6_dup772|chr2:226949951-226951189:-|1.0354692058158286|0.0164098306210651|5.98|151.0|50|1|anti-sense REV__L1MA6_dup772|chr2:226949951-226951189:-|1.0354692058158286|0.0164098306210651|5.98|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_3 4 571.3331909179688 2 571.310615 1140.60668 NaN NaN NaN NaN NaN NaN NaN 62.413 1 65.58 65.08 66.08 3.1667 0 0 0 0.22485 1 14795 14795 14.838 1.3304 1 + 26875 25483 16832 16841 31278 31278 0.04199763071733287 LYQIKFFLA 9 Unmodified _LYQIKFFLA_ 0 0 0 REV__L1MB3_dup3530|chr3:136653757-136655481:+|1.480825283535807|0.0134722797356981|6.78|149.0|90|2|anti-sense REV__L1MB3_dup3530|chr3:136653757-136655481:+|1.480825283535807|0.0134722797356981|6.78|149.0|90|2|anti-sense MSMS UPN47_class_I_Rep_1 2 571.8357543945312 2 571.83406 1141.65357 NaN NaN NaN NaN NaN NaN NaN 15.941 1 19.438 18.938 19.938 3.4968 0 0 0 0.39428 1 938 938 2.0598 0 1 + 26876 25880 16833 16842 31279 31279 0.08840667413528536 LYQLMRLCW 9 Unmodified _LYQLMRLCW_ 0 0 0 ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469765.5_1_1:32745435-32751314:+|nuORF ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS UPN48_class_I_Rep_1 5 613.3154296875 2 613.314654 1224.61476 0.49212 0.00030183 -0.93259 -0.00057197 -0.44047 -0.00027015 613.3141092736018 55.831 0.6267 59.333 59.017 59.643 3.5014 73 43 2 0 0 0 0.33654 2 11890 11890;11991 11.64 1.5664 1 220700 26877 4973 16834 16843 31280;31281 31280 0.011432955158625191 LYQLMRLCW 9 Unmodified _LYQLMRLCW_ 0 0 0 ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469765.5_1_1:32745435-32751314:+|nuORF ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS UPN48_class_I_Rep_3 7 613.314697265625 2 613.314654 1224.61476 0.4548 0.00027894 -0.9364 -0.00057431 -0.4816 -0.00029537 613.3140292063115 55.737 0.68965 59.292 58.931 59.621 3.5554 78 47 2 0 0 0 0.33654 1 11764 11764 11.64 1.5664 1 266470 26878 4973 16834 16843 31282 31282 0.011432955158625191 LYQLNKFK 8 Unmodified _LYQLNKFK_ 0 0 0 REV__L1ME2z_dup5538|chr15:59007066-59008214:-|1.2992533869499656|0.012986796660484|6.64|150.0|5|1|sense REV__L1ME2z_dup5538|chr15:59007066-59008214:-|1.2992533869499656|0.012986796660484|6.64|150.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 527.30615234375 2 527.30821 1052.60187 NaN NaN NaN NaN NaN NaN NaN 97.633 1 101.24 100.74 101.74 3.6088 0 0 0 0.40625 1 23552 23552 2.3027 0 1 + 26879 27929 16835 16844 31283 31283 0.07766923719623264 LYQRRNEELFK 11 Unmodified _LYQRRNEELFK_ 0 0 0 REV__L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|13|1|sense REV__L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 499.2732849121094 3 499.272047 1494.79431 NaN NaN NaN NaN NaN NaN NaN 56.217 1 56.217 55.717 56.717 0 0 0 0 0.38417 1 12251 12251 1.3296 0.82369 1 + 26880 27837 16836 16845 31284 31284 0.06670594328966217 LYQTCNRFI 9 Unmodified _LYQTCNRFI_ 0 0 0 REV__L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|44|1|sense REV__L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|44|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.7927856445312 2 579.292233 1156.56991 0.39091 0.00022645 0.15737 9.1161E-05 0.54828 0.00031761 579.7929431404668 35.172 0.59071 38.845 38.63 39.221 3.6721 107 63 3 0 0 0 0.46434 1 5676 5676 4.3292 0 1 93519 + 26881 29229 16837 16846 31285 31285 -0.002108120258526469 LYQTCNRFI 9 Unmodified _LYQTCNRFI_ 0 0 0 REV__L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|44|1|sense REV__L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|44|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 579.292233 1156.56991 0.4518 0.00026172 -0.48532 -0.00028114 -0.033525 -1.9421E-05 579.2925078341877 35.363 0.15826 38.873 38.784 38.942 3.5101 0.01415 -0.00063032 NaN 4.3292 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 74505 + 26882 29229 16837 16846 -0.002108120258526469 LYRDIFQHL 9 Unmodified _LYRDIFQHL_ 0 0 0 ENSG00000123405|ENST00000435572|NFE2;chr12:54295304-54295544|151|28.28|0.75|5.24|-|ENST00000312156|NFE2,NFE2 ENSG00000123405|ENST00000435572|NFE2 ENSG00000123405|ENST00000435572|NFE2 MULTI-MSMS UPN48_class_I_Rep_1 5 602.8269653320312 2 602.827298 1203.64004 0.48661 0.00029334 -0.23846 -0.00014375 0.24815 0.00014959 602.8271297069447 55.813 0.57132 59.314 59.083 59.654 3.5014 57 40 2 0 0 0 0.35123 1 12052 12052 10.8 2.0541 1 188030 26883 583 16838 16847 31286 31286 0.04636809634257588 LYRDIFQHL 9 Unmodified _LYRDIFQHL_ 0 0 0 ENSG00000123405|ENST00000435572|NFE2;chr12:54295304-54295544|151|28.28|0.75|5.24|-|ENST00000312156|NFE2,NFE2 ENSG00000123405|ENST00000435572|NFE2 ENSG00000123405|ENST00000435572|NFE2 MULTI-MSMS UPN48_class_I_Rep_2 6 602.8277587890625 2 602.827298 1203.64004 0.60735 0.00036613 -0.22999 -0.00013865 0.37736 0.00022748 602.8271219152726 55.784 0.83109 59.34 58.989 59.82 3.5559 84 58 2 0 0 0 0.39745 1 11990 11990 8.1555 0.24537 1 291830 26884 583 16838 16847 31287 31287 0.04636809634257588 LYRFDMSES 9 Unmodified _LYRFDMSES_ 0 0 0 REV__ENSG00000162924.15,REL,chr2,+,I1.1,60881851,60891682|62|13.3|1|intron REV__ENSG00000162924.15,REL,chr2,+,I1.1,60881851,60891682|62|13.3|1|intron MSMS UPN48_class_I_Rep_3 7 574.258056640625 2 574.258056 1146.50156 NaN NaN NaN NaN NaN NaN NaN 100.22 1 104.08 103.58 104.58 3.8537 0 0 0 0.39518 1 23730 23730 1.8442 1.0506 1 + 26885 19952 16839 16848 31288 31288 -0.0658310139635887 LYRFLARRT 9 Unmodified _LYRFLARRT_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000547892.1_1_19:49120227-49120731:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MSMS UPN47_class_I_Rep_3 4 598.358154296875 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 52.699 1 55.904 55.404 56.404 3.2055 0 0 0 0.37476 1 11828 11828 6.7232 0.51738 1 26886 981 16840 16849 31289 31289 0.10899910999410167 LYRHVWPL 8 Unmodified _LYRHVWPL_ 0 0 0 REV__nc|ENSG00000141524|Q7Z403-3|TMC6 REV__nc|ENSG00000141524|Q7Z403-3|TMC6 MSMS UPN47_class_I_Rep_1 2 542.3087158203125 2 542.308544 1082.60253 NaN NaN NaN NaN NaN NaN NaN 74.434 1 77.827 77.327 78.327 3.3937 0 0 0 0.39624 1 18319 18319 9.3474 0 1 + 26887 19382 16841 16850 31290 31290 0.06453763159333903 LYRKLTHV 8 Unmodified _LYRKLTHV_ 0 0 0 ENST00000553429.1_1_15:22546301-22546790:+|nuORF ENST00000553429.1_1_15:22546301-22546790:+|nuORF ENST00000553429.1_1_15:22546301-22546790:+|nuORF MSMS UPN47_class_I_Rep_3 4 515.3125 2 515.313826 1028.6131 NaN NaN NaN NaN NaN NaN NaN 84.04 1 87.39 86.89 87.89 3.35 0 0 0 0.40643 1 21086 21086 2.0598 0 1 26888 7412 16842 16851 31291 31291 0.09993745813744681 LYRKLYFKF 9 Unmodified _LYRKLYFKF_ 0 0 0 Arthur1_dup1560|chr10:26479688-26479870:-|1.041122468206072|0.0037991523595159|8.1|151.0|2|1|sense Arthur1_dup1560|chr10:26479688-26479870:-|1.041122468206072|0.0037991523595159|8.1|151.0|2|1|sense Arthur1_dup1560|chr10:26479688-26479870:-|1.041122468206072|0.0037991523595159|8.1|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 639.3749389648438 2 639.373884 1276.73321 NaN NaN NaN NaN NaN NaN NaN 47.677 1 47.677 47.177 48.177 0 0 0 0 0.4007 1 9878 9878 0.52476 0 1 26889 405 16843 16852 31292 31292 0.10591734087483928 LYRLAEELL 9 Unmodified _LYRLAEELL_ 0 0 0 ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH MULTI-MSMS UPN48_class_I_Rep_1 5 560.323974609375 2 560.324057 1118.63356 0.50033 0.00028035 -0.0052526 -2.9431E-06 0.49508 0.0002774 560.3240643378491 70.393 0.52206 73.853 73.449 73.971 3.4598 66 43 2 0 0 0 0.43153 1 16414 16414 6.2058 0 1 214840 26890 3143 16844 16853 31293 31293 0.07898871682891695 LYRLAEELL 9 Unmodified _LYRLAEELL_ 0 0 0 ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH MULTI-MSMS UPN48_class_I_Rep_3 7 560.3244018554688 2 560.324057 1118.63356 0.47816 0.00026792 -0.085111 -4.769E-05 0.39305 0.00022023 560.3239979094155 70.079 0.6118 73.592 73.257 73.869 3.5128 78 50 2 0 0 0 0.43153 1 16236 16236 6.2058 0 1 294850 26891 3143 16844 16853 31294 31294 0.07898871682891695 LYRLAEELL 9 Unmodified _LYRLAEELL_ 0 0 0 ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 560.324057 1118.63356 0.50033 0.00028035 -0.0052526 -2.9431E-06 0.49508 0.0002774 560.3240643378491 70.393 0.52206 73.853 73.449 73.971 3.4598 0.16223 5.9602E-05 NaN 6.2058 66 43 2 NaN NaN NaN NaN 0 NaN NaN 0 214840 26892 3143 16844 16853 0.07898871682891695 LYRLAEELL 9 Unmodified _LYRLAEELL_ 0 0 0 ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 560.324057 1118.63356 0.47816 0.00026792 -0.085111 -4.769E-05 0.39305 0.00022023 560.3239979094155 70.079 0.6118 73.592 73.257 73.869 3.5128 -0.098636 -2.9891E-05 NaN 6.2058 78 50 2 NaN NaN NaN NaN 0 NaN NaN 0 294850 26893 3143 16844 16853 0.07898871682891695 LYRMCQQY 8 Unmodified _LYRMCQQY_ 0 0 0 REV__L1ME3_dup2298|chr4:39759734-39759893:+|1.0068473499471318|0.0321388606357038|4.97|151.0|14|3|anti-sense REV__L1ME3_dup2298|chr4:39759734-39759893:+|1.0068473499471318|0.0321388606357038|4.97|151.0|14|3|anti-sense MSMS UPN48_class_I_Rep_3 7 552.75390625 2 552.751887 1103.48922 NaN NaN NaN NaN NaN NaN NaN 62.047 1 65.557 65.057 66.057 3.5104 0 0 0 0.39819 1 13762 13762 8.5933 2.3875 1 + 26894 27945 16845 16854 31295 31295 -0.05838416340384356 LYRMLSIM 8 Unmodified _LYRMLSIM_ 0 0 0 REV__L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|7|2|sense REV__L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 513.7786865234375 2 513.777373 1025.54019 NaN NaN NaN NaN NaN NaN NaN 68.888 1 72.396 71.896 72.896 3.5083 0 0 0 0.39624 1 15919 15919 9.3474 0 1 + 26895 25802 16846 16855 31296 31296 0.028445327044664737 LYRMLSIM 8 Unmodified _LYRMLSIM_ 0 0 0 REV__L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|7|2|sense REV__L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 513.7786865234375 2 513.777373 1025.54019 NaN NaN NaN NaN NaN NaN NaN 69.037 1 72.558 72.058 73.058 3.5216 0 0 0 0.39624 1 15964 15964 9.3474 0 1 + 26896 25802 16846 16855 31297 31297 0.028445327044664737 LYRNHRHQ 8 Unmodified _LYRNHRHQ_ 0 0 0 ENST00000351365.7_1_18:77663978-77709700:-|nuORF;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2 ENST00000351365.7_1_18:77663978-77709700:-|nuORF ENST00000351365.7_1_18:77663978-77709700:-|nuORF MSMS UPN46_class_I_Rep_3 1 562.2987670898438 2 562.29703 1122.57951 NaN NaN NaN NaN NaN NaN NaN 43.564 1 43.564 43.064 44.064 0 0 0 0 0.40364 1 8709 8709 5.7604 0.028577 1 26897 2388 16847 16856 31298 31298 0.023121370945546005 LYRREIHP 8 Unmodified _LYRREIHP_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS UPN47_class_I_Rep_1 2 542.3082275390625 2 542.306532 1082.59851 0.41631 0.00022577 2.7883 0.0015121 3.2046 0.0017379 542.3077896165559 74.768 0.059631 78.162 78.135 78.195 3.3937 8 5 2 0 0 0 0.82752 1 18425 18425 5.2307 1.2863 1 65798 26898 4784 16848 16857 31299 31299 0.06051673665592716 LYRRKLDR 8 Unmodified _LYRRKLDR_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN47_class_I_Rep_2 3 560.3397827148438 2 560.340907 1118.66726 0.63485 0.00035573 -1.6506 -0.00092493 -1.0158 -0.0005692 560.3399296640494 95.292 0.12292 98.767 98.736 98.859 3.4753 18 16 2 0 0 0 0.82752 1 23460 23460 0.6015 0 1 202160 26899 1929 16849 16858 31300 31300 0.11267337965296065 LYRRLRYSI 9 Unmodified _LYRRLRYSI_ 0 0 0 REV__L1MC1_dup11232|chr15:72522709-72523817:+|1.8231409499065712|0.0956205801443516|4.25|151.0|1|1|sense REV__L1MC1_dup11232|chr15:72522709-72523817:+|1.8231409499065712|0.0956205801443516|4.25|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 620.3705444335938 2 620.369664 1238.72478 NaN NaN NaN NaN NaN NaN NaN 85.535 1 89.126 88.626 89.626 3.5914 0 0 0 0.4007 1 21360 21360 0.52476 0 1 + 26900 26501 16850 16859 31301 31301 0.1149618017091143 LYRSCEIYV 9 Unmodified _LYRSCEIYV_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 573.2862548828125 2 573.286617 1144.55868 0.41779 0.00023951 -0.078933 -4.5251E-05 0.33886 0.00019426 573.286424214278 63.245 0.30016 63.245 63.024 63.324 0 83 31 3 0 0 0 0.15122 2 14180 14147;14180 25.399 8.457 1 1087600 26901 15355 16851 16860 31302;31303 31303 -0.007816341199941235 LYRSCEIYV 9 Unmodified _LYRSCEIYV_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 573.2864379882812 2 573.286617 1144.55868 0.41843 0.00023988 -0.47075 -0.00026988 -0.052325 -2.9997E-05 573.2861454980656 63.422 0.37653 63.422 63.304 63.681 0 98 44 3 0 0 0 0.15122 2 14216 14216;14248 25.399 6.1423 1 1095800 26902 15355 16851 16860 31304;31305 31304 -0.007816341199941235 LYRSCEIYV 9 Unmodified _LYRSCEIYV_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.2868041992188 2 573.286617 1144.55868 0.36641 0.00021006 0.94984 0.00054453 1.3162 0.00075459 573.287693236752 57.811 1.3311 61.248 60.804 62.135 3.437 227 93 4 0 0 0 0.15122 3 13258 13216;13258;13296 25.399 8.2864 1 826910 26903 15355 16851 16860 31306;31307;31308 31307 -0.007816341199941235 LYRSCEIYV 9 Unmodified _LYRSCEIYV_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 573.2866821289062 2 573.286617 1144.55868 0.51954 0.00029785 0.41884 0.00024012 0.93838 0.00053796 573.2872177422181 58.036 1.3523 61.328 60.934 62.286 3.2912 221 91 4 0 0 0 0.15122 4 13364 13326;13364;13404;13445 25.399 8.457 1 883260 26904 15355 16851 16860 31309;31310;31311;31312 31310 -0.007816341199941235 LYRTPSCYP 9 Unmodified _LYRTPSCYP_ 0 0 0 MER21B_dup30|chr1:28942103-28942946:-|1.7132837954735294|0.0162803087889728|6.72|151.0|9|1|sense MER21B_dup30|chr1:28942103-28942946:-|1.7132837954735294|0.0162803087889728|6.72|151.0|9|1|sense MER21B_dup30|chr1:28942103-28942946:-|1.7132837954735294|0.0162803087889728|6.72|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 549.7644653320312 2 550.265684 1098.51682 0.33601 0.0001849 0.67814 0.00037316 1.0142 0.00055805 550.266135560833 44.673 0.14412 48.31 48.239 48.383 3.6371 14 10 2 0 0 0 0.12354 1 8458 8458 3.5965 0.70727 1 69918 26905 15872 16852 16861 31313 31313 -0.0285018980850964 LYRVILHL 8 Unmodified _LYRVILHL_ 0 0 0 REV__L1MC4_dup18534|chr13:46706827-46707532:-|1.2693561448856|0.1648647829463375|2.94|150.0|39|2|anti-sense REV__L1MC4_dup18534|chr13:46706827-46707532:-|1.2693561448856|0.1648647829463375|2.94|150.0|39|2|anti-sense MSMS UPN47_class_I_Rep_2 3 513.8245849609375 2 513.826569 1025.63859 NaN NaN NaN NaN NaN NaN NaN 45.479 1 48.833 48.333 49.333 3.3534 0 0 0 0.40604 1 9587 9587 2.5775 0.27475 1 + 26906 26845 16853 16862 31314 31314 0.12679220336190156 LYRVLSVTGI 10 Unmodified _LYRVLSVTGI_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS UPN48_class_I_Rep_1 5 560.840087890625 2 560.839874 1119.66519 0.44495 0.00024954 -0.33661 -0.00018879 0.10833 6.0758E-05 560.8395919446408 47.168 0.60618 50.69 50.371 50.977 3.5219 59 37 2 0 0 0 0.46742 1 9287 9287 14.405 1.3629 1 182490 26907 5345 16854 16863 31315 31315 0.11014864436856442 LYSCEYAVTI 10 Unmodified _LYSCEYAVTI_ 0 0 0 REV__MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense REV__MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 581.2952880859375 2 581.278457 1160.54236 NaN NaN NaN NaN NaN NaN NaN 60.902 1 64.381 63.881 64.881 3.4785 0 0 0 0.53105 1 13484 13484 19.257 0.53576 1 + 26908 31680 16855 16864 31316 31316 -0.031487600767377444 LYSEVDVHF 9 Unmodified _LYSEVDVHF_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MSMS UPN48_class_I_Rep_1 5 554.7691040039062 2 554.769114 1107.52368 0.59024 0.00032745 -0.39072 -0.00021676 0.19952 0.00011069 554.7688236791467 57.429 0.36654 60.923 60.763 61.129 3.4942 50 31 2 0 0 0 0.25207 1 12458 12458 16.942 6.8684 1 107860 26909 3300 16856 16865 31317 31317 -0.025785536562807465 LYSEVDVHF 9 Unmodified _LYSEVDVHF_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MSMS UPN48_class_I_Rep_2 6 554.7691650390625 2 554.769114 1107.52368 0.59685 0.00033111 -0.21675 -0.00012025 0.3801 0.00021087 554.7689806432999 57.499 0.49567 61.013 60.796 61.292 3.5142 45 39 2 0 0 0 0.045397 1 12451 12451 50.855 33.913 1 136930 26910 3300 16856 16865 31318 31318 -0.025785536562807465 LYSEVDVHF 9 Unmodified _LYSEVDVHF_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MSMS UPN48_class_I_Rep_3 7 554.7694702148438 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 57.357 1 60.889 60.389 61.389 3.5317 0 0 0 0.11494 1 12331 12331 21.747 7.165 1 26911 3300 16856 16865 31319 31319 -0.025785536562807465 LYSEVDVHF 9 Unmodified _LYSEVDVHF_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MSMS UPN48_class_I_Rep_3 7 554.76904296875 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 57.512 1 61.044 60.544 61.544 3.5317 0 0 0 0.081393 1 12378 12378 28.487 11.545 1 26912 3300 16856 16865 31320 31320 -0.025785536562807465 LYSFDFYNV 9 Unmodified _LYSFDFYNV_ 0 0 0 L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|30|3|sense L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|30|3|sense L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.3493041992188 2 584.27149 1166.52843 0.43808 0.00025596 0.060287 3.5224E-05 0.49837 0.00029118 584.2714907088332 77.541 0.11102 81.063 81.052 81.163 3.5221 6 5 2 0 0 0 0.47197 1 18463 18463 3.5965 0 1 38952 26913 11412 16857 16866 31321 31321 -0.0481766951352256 LYSFKNSSY 9 Unmodified _LYSFKNSSY_ 0 0 0 L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|192|2|anti-sense L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|192|2|anti-sense L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|192|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.7697143554688 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 57.708 1 61.202 60.702 61.702 3.4942 0 0 0 0.37476 1 12526 12526 6.7232 0.36906 1 26914 9395 16858 16867 31322 31322 -0.025785536562807465 LYSIEKQFL 9 Unmodified _LYSIEKQFL_ 0 0 0 REV__L1MB5_dup3641|chr8:103388194-103388949:+|1.0495541231696246|0.1737255173506954|2.59|149.0|36|2|anti-sense REV__L1MB5_dup3641|chr8:103388194-103388949:+|1.0495541231696246|0.1737255173506954|2.59|149.0|36|2|anti-sense MSMS UPN47_class_I_Rep_1 2 570.8182983398438 2 570.818607 1139.62266 NaN NaN NaN NaN NaN NaN NaN 71.309 1 74.684 74.184 75.184 3.3751 0 0 0 0.3377 1 17378 17378 8.7454 0 1 + 26915 26061 16859 16868 31323 31323 0.058434693086155676 LYSIEKQFL 9 Unmodified _LYSIEKQFL_ 0 0 0 REV__L1MB5_dup3641|chr8:103388194-103388949:+|1.0495541231696246|0.1737255173506954|2.59|149.0|36|2|anti-sense REV__L1MB5_dup3641|chr8:103388194-103388949:+|1.0495541231696246|0.1737255173506954|2.59|149.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.8193969726562 2 570.818607 1139.62266 0.44862 0.00025608 0.76666 0.00043762 1.2153 0.0006937 570.8189301428092 71.073 0.71333 74.285 74.188 74.901 3.2113 78 61 2 0 0 0 0.38714 1 17545 17545 8.7454 0 1 357080 + 26916 26061 16859 16868 31324 31324 0.058434693086155676 LYSIVDSPHF 10 Unmodified _LYSIVDSPHF_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 589.2985229492188 2 589.298039 1176.58152 0.47412 0.0002794 0.061685 3.6351E-05 0.53581 0.00031575 589.2982388771865 70.481 0.063553 74.017 73.989 74.052 3.5359 8 6 2 0 0 0 0.52083 1 16400 16400 9.3831 1.2276 1 96366 26917 11565 16860 16869 31325 31325 0.00029708269130424014 LYSIVDSPHF 10 Unmodified _LYSIVDSPHF_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 589.298039 1176.58152 0.45523 0.00026827 -0.18373 -0.00010827 0.2715 0.00016 589.2979873982894 70.658 0.041557 74.118 74.099 74.14 3.4598 0.1351 -0.00025465 NaN 9.3831 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 89594 26918 11565 16860 16869 0.00029708269130424014 LYSIVDSPHF 10 Unmodified _LYSIVDSPHF_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|171|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 589.298039 1176.58152 0.56799 0.00033471 0.82996 0.0004891 1.3979 0.00082381 589.800101948259 70.3 0.047539 73.813 73.78 73.827 3.5128 -0.16959 0.00094009 NaN 9.3831 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 109560 26919 11565 16860 16869 0.00029708269130424014 LYSLMWPHP 9 Unmodified _LYSLMWPHP_ 0 0 0 LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|47|1|anti-sense LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|47|1|anti-sense LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|47|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.2867431640625 2 572.28642 1142.55829 0.34153 0.00019545 -0.070202 -4.0175E-05 0.27133 0.00015528 572.2876824079657 58.434 1.6098 61.6 60.889 62.499 3.1658 368 104 6 0 0 0 0.3898 2 13427 13427;13473 8.5933 0.68312 1 2050300 26920 15535 16861 16870 31326;31327 31326 -0.007290090491778756 LYSMFFAFL 9 Unmodified _LYSMFFAFL_ 0 0 0 REV__L1MB8_dup1554|chr2:73577389-73579056:-|1.0482193151358743|0.0352193878656724|4.9|150.0|124|3|anti-sense REV__L1MB8_dup1554|chr2:73577389-73579056:-|1.0482193151358743|0.0352193878656724|4.9|150.0|124|3|anti-sense MSMS UPN48_class_I_Rep_3 7 569.7842407226562 2 569.785721 1137.55689 NaN NaN NaN NaN NaN NaN NaN 49.482 1 53.111 52.611 53.611 3.6291 0 0 0 0.34056 1 9938 9938 8.5933 2.2392 1 + 26921 26378 16862 16871 31328 31328 -0.006386431379269197 LYSNNQLKL 9 Unmodified _LYSNNQLKL_ 0 0 0 REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 546.8056640625 2 546.806031 1091.59751 0.39608 0.00021658 -0.47406 -0.00025922 -0.077986 -4.2643E-05 546.8057391612234 46.183 0.57114 49.941 49.642 50.213 3.7579 52 35 2 0 0 0 0.26948 1 9013 9013 15.847 0 1 126770 + 26922 17830 16863 16872 31329 31329 0.05537414506034111 LYSNNQLKL 9 Unmodified _LYSNNQLKL_ 0 0 0 REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 546.8060302734375 2 546.806031 1091.59751 0.38272 0.00020927 -0.039435 -2.1563E-05 0.34328 0.00018771 546.806138147187 46.41 0.52244 50.047 49.771 50.293 3.6363 48 31 2 0 0 0 0.26948 1 9002 9002 15.847 0 1 170430 + 26923 17830 16863 16872 31330 31330 0.05537414506034111 LYTEKFEEF 9 Unmodified _LYTEKFEEF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS UPN48_class_I_Rep_1 5 603.290283203125 2 603.289879 1204.56521 0.46453 0.00028025 -0.27835 -0.00016792 0.18618 0.00011232 603.2895698922825 54.768 0.65884 58.276 57.899 58.558 3.5082 119 46 3 0 0 0 0.0060665 5 11635 11557;11559;11598;11635;11680 90.135 57.829 1 579550 26924 1254 16864 16873 31331;31332;31333;31334;31335 31334 -0.028894176876065103 LYTEKFEEF 9 Unmodified _LYTEKFEEF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS UPN48_class_I_Rep_2 6 603.2900390625 2 603.289879 1204.56521 0.59619 0.00035967 -0.33825 -0.00020407 0.25793 0.00015561 603.2895176128704 54.722 0.60188 58.304 57.966 58.567 3.5817 105 39 3 0 0 0 0.0047467 4 11625 11546;11583;11625;11666 100.09 67.785 1 606080 26925 1254 16864 16873 31336;31337;31338;31339 31338 -0.028894176876065103 LYTEKFEEF 9 Unmodified _LYTEKFEEF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS UPN48_class_I_Rep_3 7 603.2901000976562 2 603.289879 1204.56521 0.40751 0.00024585 -0.34856 -0.00021028 0.058953 3.5566E-05 603.2895652403341 54.681 0.61906 58.25 57.899 58.518 3.5694 113 42 3 0 0 0 0.0055879 7 11511 11432;11439;11471;11511;11554;11575;11595 80.676 53.792 1 604820 26926 1254 16864 16873 31340;31341;31342;31343;31344;31345;31346 31343 -0.028894176876065103 LYTIDQSYF 9 Unmodified _LYTIDQSYF_ 0 0 0 REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 575.2776489257812 2 575.276772 1148.53899 0.47505 0.00027328 -0.2737 -0.00015745 0.20134 0.00011583 575.2765286872227 77.879 0.46648 81.501 81.309 81.776 3.6223 72 46 2 0 0 0 0.35081 1 18533 18533 10.824 10.824 1 155760 + 26927 17646 16865 16874 31347 31347 -0.02933686859091722 LYTIDQSYF 9 Unmodified _LYTIDQSYF_ 0 0 0 REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 575.276772 1148.53899 0.43278 0.00024897 0.22057 0.00012689 0.65335 0.00037586 575.2769240581382 77.97 0.15389 81.493 81.373 81.527 3.5221 -0.0042371 0.00051302 NaN 10.824 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 120890 + 26928 17646 16865 16874 -0.02933686859091722 LYTIFAAALQ 10 Unmodified _LYTIFAAALQ_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS UPN48_class_I_Rep_1 5 555.8132934570312 2 555.813325 1109.6121 0.60884 0.0003384 -0.21497 -0.00011949 0.39386 0.00021892 555.8131258796085 63.581 0.70411 67.039 66.686 67.39 3.4578 94 57 2 0 0 0 0.31818 1 14285 14285 27.629 0.74515 1 225310 + 26929 20925 16866 16875 31348 31348 0.061674866541807205 LYTIFAAALQ 10 Unmodified _LYTIFAAALQ_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-MSMS UPN48_class_I_Rep_2 6 555.8135375976562 2 555.813325 1109.6121 0.53943 0.00029982 0.037274 2.0717E-05 0.57671 0.00032054 555.8132273685504 63.453 0.67855 66.927 66.607 67.285 3.4738 79 56 2 0 0 0 0.31818 1 14326 14326 27.629 2.6378 1 336350 + 26930 20925 16866 16875 31349 31349 0.061674866541807205 LYTKHERIS 9 Unmodified _LYTKHERIS_ 0 0 0 L1MA4A_dup899|chr2:197288323-197289858:+|7.4906962001570845|0.0361608361611964|7.69|151.0|16|1|sense L1MA4A_dup899|chr2:197288323-197289858:+|7.4906962001570845|0.0361608361611964|7.69|151.0|16|1|sense L1MA4A_dup899|chr2:197288323-197289858:+|7.4906962001570845|0.0361608361611964|7.69|151.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 573.8009033203125 2 573.81693 1145.61931 NaN NaN NaN NaN NaN NaN NaN 66.881 1 70.333 69.833 70.833 3.4516 0 0 0 0.089203 1 15327 15327 26.884 5.137 1 26931 9861 16867 16876 31350 31350 0.052322192545943835 LYTLFPPLF 9 Unmodified _LYTLFPPLF_ 0 0 0 L1MC1_dup392|chr1:97401614-97403138:-|1.619297388567624|0.0119285221604487|7.08|151.0|63|1|anti-sense L1MC1_dup392|chr1:97401614-97403138:-|1.619297388567624|0.0119285221604487|7.08|151.0|63|1|anti-sense L1MC1_dup392|chr1:97401614-97403138:-|1.619297388567624|0.0119285221604487|7.08|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.8132934570312 2 555.815336 1109.61612 NaN NaN NaN NaN NaN NaN NaN 65 1 68.479 67.979 68.979 3.4792 0 0 0 0.35339 1 14741 14741 7.9102 1.187 1 26932 11141 16868 16877 31351 31351 0.06569576147876433 LYTNFCIQQL 10 Unmodified _LYTNFCIQQL_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|107|1|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|107|1|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|107|1|anti-sense MSMS UPN48_class_I_Rep_2 6 621.8125610351562 2 621.812999 1241.61144 NaN NaN NaN NaN NaN NaN NaN 69.808 1 73.329 72.829 73.829 3.5216 0 0 0 0.53105 1 16196 16196 1.6526 0 1 26933 13810 16869 16878 31352 31352 0.00030323942814902693 LYTRVPVSP 9 Unmodified _LYTRVPVSP_ 0 0 0 L1MB2_dup543|chr1:230089449-230090132:-|1.0648767794827336|0.0740964407489921|3.85|151.0|39|3|anti-sense L1MB2_dup543|chr1:230089449-230090132:-|1.0648767794827336|0.0740964407489921|3.85|151.0|39|3|anti-sense L1MB2_dup543|chr1:230089449-230090132:-|1.0648767794827336|0.0740964407489921|3.85|151.0|39|3|anti-sense MSMS UPN46_class_I_Rep_3 1 516.2969970703125 2 516.297842 1030.58113 NaN NaN NaN NaN NaN NaN NaN 82.814 1 82.814 82.314 83.314 0 0 0 0 0.39428 1 19638 19638 2.0598 0.21551 1 26934 10259 16870 16879 31353 31353 0.06706333339957382 LYTYTGSEQ 9 Unmodified _LYTYTGSEQ_ 0 0 0 L1MC3_dup3930|chr5:69887039-69887464:-|1.0063547828035706|0.0113430648846434|6.47|147.0|9|2|sense L1MC3_dup3930|chr5:69887039-69887464:-|1.0063547828035706|0.0113430648846434|6.47|147.0|9|2|sense L1MC3_dup3930|chr5:69887039-69887464:-|1.0063547828035706|0.0113430648846434|6.47|147.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 530.7698974609375 2 531.242929 1060.47131 NaN NaN NaN NaN NaN NaN NaN 117.37 1 120.99 120.49 121.49 3.6215 0 0 0 0.3967 1 28601 28601 1.4819 0.28856 1 26935 11335 16871 16880 31354 31354 -0.056511367899020115 LYVCEMDYY 9 Unmodified _LYVCEMDYY_ 0 0 0 REV__Tigger6a_dup428|chr9:15495361-15496307:-|1.5219438429102323|0.2844553614437873|2.42|151.0|54|2|anti-sense REV__Tigger6a_dup428|chr9:15495361-15496307:-|1.5219438429102323|0.2844553614437873|2.42|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 599.7457275390625 2 599.743393 1197.47223 NaN NaN NaN NaN NaN NaN NaN 73.081 1 76.465 75.965 76.965 3.3848 0 0 0 0.39428 1 17923 17923 2.0598 0 1 + 26936 32801 16872 16881 31355 31355 -0.11860381736846648 LYVEATHFIN 10 Unmodified _LYVEATHFIN_ 0 0 0 REV__L1MB8_dup7882|chr9:33976264-33976690:+|1.6349023994707943|0.0187715657037642|6.44|151.0|17|1|anti-sense REV__L1MB8_dup7882|chr9:33976264-33976690:+|1.6349023994707943|0.0187715657037642|6.44|151.0|17|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 603.8114624023438 2 603.811313 1205.60807 0.3904 0.00023573 0.051816 3.1287E-05 0.44222 0.00026702 603.8112470361646 56.684 1.2043 60.141 59.775 60.979 3.4572 266 100 4 0 0 0 0.40227 1 13116 13116 19.257 2.1441 1 1990600 + 26937 26434 16873 16882 31356 31356 0.013493971604930266 LYVGHIFWH 9 Unmodified _LYVGHIFWH_ 0 0 0 L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.805908203125 2 586.306001 1170.59745 0.5455 0.00031983 -0.95085 -0.00055749 -0.40535 -0.00023766 586.3053349023655 66.245 0.73257 69.753 69.403 70.136 3.5077 108 55 3 0 0 0 0.37662 1 14968 14968 9.3474 1.4373 1 194730 26938 10632 16874 16883 31357 31357 0.018974592966969794 LYVGYTRV 8 Unmodified _LYVGYTRV_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MSMS UPN46_class_I_Rep_3 1 485.77337646484375 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 118.46 1 118.46 117.96 118.96 0 0 0 0 0.40738 1 29406 29406 0.79363 0 1 26939 3234 16875 16884 31358 31358 0.042383752771456784 LYVHYGQIF 9 Unmodified _LYVHYGQIF_ 0 0 0 REV__ENSG00000145623|ENST00000274276|OSMR REV__ENSG00000145623|ENST00000274276|OSMR MSMS UPN48_class_I_Rep_1 5 570.2965087890625 2 570.297842 1138.58113 NaN NaN NaN NaN NaN NaN NaN 58.968 1 62.455 61.955 62.955 3.487 0 0 0 0.39428 1 12915 12915 2.0598 0.21551 1 + 26940 19517 16876 16885 31359 31359 0.01738333339926612 LYVLNIFLL 9 Unmodified _LYVLNIFLL_ 0 0 0 L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|70|1|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|70|1|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.3448486328125 2 554.344261 1106.67397 0.43499 0.00024113 -0.15603 -8.6492E-05 0.27896 0.00015464 554.3440718134617 76.993 0.46764 80.594 80.456 80.924 3.6016 56 39 2 0 0 0 0.32219 2 18157 18157;18181 12.532 3.9383 1 195350 26941 10438 16877 16886 31360;31361 31360 0.12489838073338433 LYVMPLSPG 9 Unmodified _LYVMPLSPG_ 0 0 0 L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|86|1|anti-sense;L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|207|3|anti-sense L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|86|1|anti-sense L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|86|1|anti-sense MSMS UPN46_class_I_Rep_3 1 488.7352600097656 2 488.762246 975.50994 NaN NaN NaN NaN NaN NaN NaN 40.223 1 40.223 39.723 40.723 0 0 0 0 0.38299 1 7792 7792 4.756 0 1 26942 8543 16878 16887 31362 31362 0.021204973109433922 LYVRLFAKHQ 10 Unmodified _LYVRLFAKHQ_ 0 0 0 L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|73|2|anti-sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|73|2|anti-sense L1MB5_dup8933|chr19:19445391-19446719:-|2.526214040447069|0.0317436433644639|6.31|151.0|73|2|anti-sense MSMS UPN48_class_I_Rep_1 5 637.8739624023438 2 637.87204 1273.72953 NaN NaN NaN NaN NaN NaN NaN 102.73 1 106.35 105.85 106.85 3.6164 0 0 0 0.53105 1 24764 24764 1.4819 0 1 26943 10662 16879 16888 31363 31363 0.10361064313656243 LYVRNEGDL 9 Unmodified _LYVRNEGDL_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000468571.1_7:111617053-111644151:-|nuORF;ENST00000476846.1_7:111503332-111846439:-|nuORF nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-MSMS UPN48_class_I_Rep_1 5 539.7786254882812 2 539.780013 1077.54547 0.37757 0.0002038 -0.50138 -0.00027063 -0.12381 -6.6831E-05 539.7796866831895 50.327 0.81477 53.852 53.517 54.332 3.5246 93 54 3 0 0 0 0.36392 1 10333 10333 10.074 0.6908 1 229450 26944 2592 16880 16889 31364 31364 0.009802510922781948 LYVTMIKDQ 9 Unmodified _LYVTMIKDQ_ 0 0 0 L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|69|2|sense L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|69|2|sense L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|69|2|sense MSMS UPN48_class_I_Rep_2 6 555.7962036132812 2 555.796817 1109.57908 NaN NaN NaN NaN NaN NaN NaN 40.773 1 44.514 44.014 45.014 3.7413 0 0 0 0.31276 1 7377 7377 10.074 0 1 26945 14527 16881 16890 31365 31365 0.028675365398157737 LYVTRDYFT 9 Unmodified _LYVTRDYFT_ 0 0 0 L1MB2_dup3707|chr7:129031986-129033273:+|1.5756451908955538|0.0971504459446397|4.02|151.0|89|3|anti-sense L1MB2_dup3707|chr7:129031986-129033273:+|1.5756451908955538|0.0971504459446397|4.02|151.0|89|3|anti-sense L1MB2_dup3707|chr7:129031986-129033273:+|1.5756451908955538|0.0971504459446397|4.02|151.0|89|3|anti-sense MSMS UPN48_class_I_Rep_2 6 589.2977905273438 2 589.298039 1176.58152 NaN NaN NaN NaN NaN NaN NaN 70.368 1 73.904 73.404 74.404 3.5359 0 0 0 0.39598 1 16365 16365 1.6526 0 1 26946 10237 16882 16891 31366 31366 0.00029708269130424014 LYVVRERG 8 Unmodified _LYVVRERG_ 0 0 0 L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|98|3|anti-sense L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|98|3|anti-sense L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|98|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2958068847656 2 496.287808 990.561064 NaN NaN NaN NaN NaN NaN NaN 33.217 1 33.217 32.717 33.717 0 0 0 0 0.40738 1 5783 5783 0.79363 0 1 26947 9750 16883 16892 31367 31367 0.0654058239999813 LYWFCWLF 8 Unmodified _LYWFCWLF_ 0 0 0 L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|125|1|anti-sense L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|125|1|anti-sense L1MB3_dup15324|chr18:21809026-21811904:+|4.778314761097247|0.4014675409684394|3.57|151.0|125|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.2816772460938 2 589.280606 1176.54666 NaN NaN NaN NaN NaN NaN NaN 77.492 1 81.015 80.515 81.515 3.5221 0 0 0 0.40581 1 18445 18445 2.8892 0.82947 1 26948 10358 16884 16893 31368 31368 -0.034552060725218325 LYWLLKML 8 Unmodified _LYWLLKML_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|363|2|anti-sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|363|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3224487304688 2 540.319731 1078.62491 0.25808 0.00013945 4.1648 0.0022503 4.4229 0.0023898 540.3219134957116 37.024 0.048813 37.024 36.988 37.037 0 7 3 3 0 0 0 0.82752 1 6922 6922 0.79363 0 1 189530 + 26949 25367 16885 16894 31369 31369 0.0887422651273937 LYWNFDQF 8 Unmodified _LYWNFDQF_ 0 0 0 REV__ENST00000480278.5_1_19:45175875-45176985:+|nuORF REV__ENST00000480278.5_1_19:45175875-45176985:+|nuORF MSMS UPN48_class_I_Rep_1 5 566.758544921875 2 566.758549 1131.50255 NaN NaN NaN NaN NaN NaN NaN 71.445 1 74.911 74.411 75.411 3.466 0 0 0 0.39408 1 16703 16703 10.183 2.2732 1 + 26950 20894 16886 16895 31370 31370 -0.05794518965149109 LYWPFVFY 8 Unmodified _LYWPFVFY_ 0 0 0 L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|44|1|anti-sense L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|44|1|anti-sense L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.785888671875 2 567.786579 1133.5586 0.48774 0.00027693 -0.53519 -0.00030388 -0.047453 -2.6943E-05 567.7862706026988 66.844 0.513 70.295 69.965 70.478 3.4516 40 33 2 0 0 0 0.82752 1 15355 15355 6.3541 6.3541 1 174910 26951 11894 16887 16896 31371 31371 -0.0028326605768143054 LYWPFVFY 8 Unmodified _LYWPFVFY_ 0 0 0 L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|44|1|anti-sense L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|44|1|anti-sense L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.7854614257812 2 567.786579 1133.5586 0.50696 0.00028785 -0.92029 -0.00052253 -0.41333 -0.00023468 567.7858584770863 66.659 0.60711 70.145 69.876 70.483 3.4866 51 40 2 0 0 0 0.82752 1 15278 15278 6.3541 6.3541 1 112600 26952 11894 16887 16896 31372 31372 -0.0028326605768143054 LYWRVRKVQ 9 Unmodified _LYWRVRKVQ_ 0 0 0 REV__HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|220|1|anti-sense REV__HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|220|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 624.8743896484375 2 624.372207 1246.72986 0.49402 0.00030845 -0.38797 -0.00024224 0.10605 6.6212E-05 624.3717814378824 91.311 0.73558 95.066 94.694 95.43 3.7554 210 108 2 0 0 0 0.48846 1 21815 21815 1.8442 0.36234 1 13908000 + 26953 23626 16888 16897 31373 31373 0.11636484033510897 LYWTSRRSP 9 Unmodified _LYWTSRRSP_ 0 0 0 REV__HERV9NC-int_dup224|chr13:100282631-100285957:+|1.2691982649622062|0.0765401774832832|4.05|144.0|82|1|anti-sense REV__HERV9NC-int_dup224|chr13:100282631-100285957:+|1.2691982649622062|0.0765401774832832|4.05|144.0|82|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 582.8095092773438 2 583.309272 1164.60399 0.51357 0.00029957 1.016 0.00059262 1.5295 0.00089219 583.3099269508521 64.792 0.19752 68.272 68.128 68.326 3.4792 13 12 2 0 0 0 0.12235 1 14660 14660 4.756 0.81161 1 75012 + 26954 23624 16889 16898 31374 31374 0.028273524574160547 LYYEGIFPVL 10 Unmodified _LYYEGIFPVL_ 0 0 0 REV__L1MD3_dup5166|chr22:20755089-20755492:-|1.213983763968161|0.1613801485403031|2.91|151.0|26|3|anti-sense REV__L1MD3_dup5166|chr22:20755089-20755492:-|1.213983763968161|0.1613801485403031|2.91|151.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 607.3292846679688 2 607.328808 1212.64306 0.40992 0.00024896 0.97789 0.0005939 1.3878 0.00084286 607.3294242286041 47.899 0.9297 51.421 51.054 51.984 3.5219 127 68 3 0 0 0 0.56273 1 9569 9569 0.40072 0 1 299410 + 26955 27488 16890 16899 31375 31375 0.04524639968417432 LYYFHPSGTF 10 Unmodified _LYYFHPSGTF_ 0 0 0 L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 616.794921875 2 616.292756 1230.57096 0.45543 0.00028068 -0.32483 -0.00020019 0.1306 8.0489E-05 616.2924843910572 77.107 0.41798 80.617 80.386 80.804 3.5102 69 41 2 0 0 0 0.51565 1 18330 18330 10.074 0.6908 1 166140 26956 10492 16891 16900 31376 31376 -0.03510274385280354 LYYFHPSGTF 10 Unmodified _LYYFHPSGTF_ 0 0 0 L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.79443359375 2 616.292756 1230.57096 0.4859 0.00029946 -0.14225 -8.7665E-05 0.34365 0.00021179 616.2927306081629 76.873 0.66518 80.485 80.253 80.918 3.6116 142 68 3 0 0 0 0.38932 2 18205 18162;18205 20.454 1.1966 1 189400 26957 10492 16891 16900 31377;31378 31378 -0.03510274385280354 LYYFHPSGTF 10 Unmodified _LYYFHPSGTF_ 0 0 0 L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 616.292724609375 2 616.292756 1230.57096 0.61887 0.0003814 -0.29872 -0.0001841 0.32015 0.00019731 616.2924048646865 76.968 0.70456 80.57 80.236 80.941 3.6016 141 66 3 0 0 0 0.33585 2 18132 18132;18174 25.399 2.663 1 192120 26958 10492 16891 16900 31379;31380 31379 -0.03510274385280354 LYYFHPSGTF 10 Unmodified _LYYFHPSGTF_ 0 0 0 L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 616.292756 1230.57096 0.45543 0.00028068 -0.32483 -0.00020019 0.1306 8.0489E-05 616.2924843910572 77.107 0.41798 80.617 80.386 80.804 3.5102 0.059945 -0.00011112 NaN 25.399 69 41 2 NaN NaN NaN NaN 0 NaN NaN 0 166140 26959 10492 16891 16900 -0.03510274385280354 LYYFHPSGTF 10 Unmodified _LYYFHPSGTF_ 0 0 0 L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense L1MB4_dup2820|chr6:4826208-4827658:-|1.9938118424357565|0.0144403821218334|7.11|151.0|73|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 616.292756 1230.57096 0.4859 0.00029946 -0.14225 -8.7665E-05 0.34365 0.00021179 616.2927306081629 76.873 0.66518 80.485 80.253 80.918 3.6116 -0.072612 0.00011393 NaN 25.399 142 68 3 NaN NaN NaN NaN 0 NaN NaN 0 189400 26960 10492 16891 16900 -0.03510274385280354 LYYFKFTF 8 Unmodified _LYYFKFTF_ 0 0 0 REV__Tigger1_dup8122|chr10:68011304-68012803:-|2.2683659111047394|0.0554755586493017|5.35|151.0|15|1|sense REV__Tigger1_dup8122|chr10:68011304-68012803:-|2.2683659111047394|0.0554755586493017|5.35|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 564.79052734375 2 564.791861 1127.56917 0.49997 0.00028238 -2.1763 -0.0012292 -1.6764 -0.0009468 565.2920807515115 69.391 0.56823 72.904 72.625 73.194 3.5128 100 44 3 0 0 0 0.82752 1 16063 16063 6.7232 0 1 232650 + 26961 32535 16892 16901 31381 31381 0.010487165967333567 LYYFRNIHL 9 Unmodified _LYYFRNIHL_ 0 0 0 L1ME3A_dup3281|chr3:125252786-125254242:-|2.7399153013897046|0.0608951456181613|5.49|151.0|70|1|anti-sense L1ME3A_dup3281|chr3:125252786-125254242:-|2.7399153013897046|0.0608951456181613|5.49|151.0|70|1|anti-sense L1ME3A_dup3281|chr3:125252786-125254242:-|2.7399153013897046|0.0608951456181613|5.49|151.0|70|1|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8402709960938 2 619.837665 1237.66078 NaN NaN NaN NaN NaN NaN NaN 69.725 1 73.093 72.593 73.593 3.3678 0 0 0 0.40038 1 16910 16910 0.6015 0 1 26962 12664 16893 16902 31382 31382 0.051454000139528944 LYYFVPRW 8 Unmodified _LYYFVPRW_ 0 0 0 REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|8|1|sense REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 572.3038330078125 2 572.302927 1142.5913 NaN NaN NaN NaN NaN NaN NaN 30.529 1 34.071 33.571 34.571 3.542 0 0 0 0.40738 1 4394 4394 0.79363 0 1 + 26963 28247 16894 16903 31383 31383 0.025709410651870712 LYYGMVHIY 9 Unmodified _LYYGMVHIY_ 0 0 0 REV__L1MB4_dup291|chr1:114492333-114493432:-|1.1572891123823967|0.0111481440984869|6.7|151.0|10|1|sense REV__L1MB4_dup291|chr1:114492333-114493432:-|1.1572891123823967|0.0111481440984869|6.7|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.7858276367188 2 579.786253 1157.55795 0.0089667 5.1988E-06 2.0057 0.0011629 2.0146 0.0011681 579.7874444400771 42.18 0.42851 45.859 45.681 46.11 3.6792 38 29 2 0 0 0 0.37662 2 8586 8586;8591 9.3474 0 1 75931 + 26964 25957 16895 16904 31384;31385 31384 -0.014524287690164783 LYYGMVHIY 9 Unmodified _LYYGMVHIY_ 0 0 0 REV__L1MB4_dup291|chr1:114492333-114493432:-|1.1572891123823967|0.0111481440984869|6.7|151.0|10|1|sense REV__L1MB4_dup291|chr1:114492333-114493432:-|1.1572891123823967|0.0111481440984869|6.7|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 580.2601318359375 2 579.786253 1157.55795 NaN NaN NaN NaN NaN NaN NaN 42.709 1 45.949 45.449 46.449 3.2394 0 0 0 0.381 1 8790 8790 5.2307 0 1 + 26965 25957 16895 16904 31386 31386 -0.014524287690164783 LYYGMYYN 8 Unmodified _LYYGMYYN_ 0 0 0 ERV3-16A3_I-int_dup2974|chr7:45052523-45054121:-|7.045603909042504|0.0841493301826846|6.39|151.0|37|3|sense ERV3-16A3_I-int_dup2974|chr7:45052523-45054121:-|7.045603909042504|0.0841493301826846|6.39|151.0|37|3|sense ERV3-16A3_I-int_dup2974|chr7:45052523-45054121:-|7.045603909042504|0.0841493301826846|6.39|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 543.764892578125 2 543.733686 1085.45282 NaN NaN NaN NaN NaN NaN NaN 69.504 1 69.504 69.004 70.004 0 0 0 0 0.40738 1 15931 15931 0.79363 0 1 26966 7709 16896 16905 31387 31387 -0.08648969965452125 LYYIKTTK 8 Unmodified _LYYIKTTK_ 0 0 0 REV__MLT1D_dup3970|chr3:149958139-149958523:-|1.6147689536677805|0.3564228457587965|2.18|151.0|23|2|anti-sense REV__MLT1D_dup3970|chr3:149958139-149958523:-|1.6147689536677805|0.3564228457587965|2.18|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_3 4 515.30078125 2 515.302593 1028.59063 NaN NaN NaN NaN NaN NaN NaN 75.248 1 78.495 77.995 78.995 3.2464 0 0 0 0.40738 1 18657 18657 0.79363 0 1 + 26967 31683 16897 16906 31388 31388 0.07748101625452364 LYYKAIAT 8 Unmodified _LYYKAIAT_ 0 0 0 L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense;L1PA17_dup164|chr1:145150264-145151058:-|1.1965547722224927|0.1487159962472249|3.01|150.0|18|3|sense;L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|63|3|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 471.768310546875 2 471.768386 941.522219 0.085844 4.0499E-05 -0.50983 -0.00024052 -0.42398 -0.00020002 471.76813543662706 49.903 0.32311 53.428 53.249 53.572 3.5246 29 19 2 0 0 0 0.82752 2 10105 10105;10177 12.532 0 1 88204 26968 14149 16898 16907 31389;31390 31389 0.04911857045601664 LYYKAIAT 8 Unmodified _LYYKAIAT_ 0 0 0 L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense;L1PA17_dup164|chr1:145150264-145151058:-|1.1965547722224927|0.1487159962472249|3.01|150.0|18|3|sense;L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|63|3|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense MSMS UPN48_class_I_Rep_2 6 471.7684631347656 2 471.768386 941.522219 NaN NaN NaN NaN NaN NaN NaN 49.827 1 53.521 53.021 54.021 3.6946 0 0 0 0.39996 1 10109 10109 7.9102 0 1 26969 14149 16898 16907 31391 31391 0.04911857045601664 LYYKAIAT 8 Unmodified _LYYKAIAT_ 0 0 0 L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense;L1PA17_dup164|chr1:145150264-145151058:-|1.1965547722224927|0.1487159962472249|3.01|150.0|18|3|sense;L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|63|3|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense MSMS UPN48_class_I_Rep_3 7 471.7682800292969 2 471.768386 941.522219 NaN NaN NaN NaN NaN NaN NaN 49.724 1 53.345 52.845 53.845 3.621 0 0 0 0.388 1 10012 10012 12.532 0 1 26970 14149 16898 16907 31392 31392 0.04911857045601664 LYYKAIAT 8 Unmodified _LYYKAIAT_ 0 0 0 L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense;L1PA17_dup164|chr1:145150264-145151058:-|1.1965547722224927|0.1487159962472249|3.01|150.0|18|3|sense;L1PB1_dup6113|chr7:139902946-139905737:-|3.65586423777546|0.1615238632811665|4.5|151.0|63|3|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|50|2|sense MSMS UPN48_class_I_Rep_3 7 471.7677917480469 2 471.768386 941.522219 NaN NaN NaN NaN NaN NaN NaN 49.87 1 53.491 52.991 53.991 3.621 0 0 0 0.388 1 10057 10057 12.532 0 1 26971 14149 16898 16907 31393 31393 0.04911857045601664 LYYLVILQEI 10 Unmodified _LYYLVILQEI_ 0 0 0 REV__MER44A_dup2145|chr17:78763430-78763768:-|1.0979571698923407|0.0018901905460898|9.18|151.0|2|1|sense REV__MER44A_dup2145|chr17:78763430-78763768:-|1.0979571698923407|0.0018901905460898|9.18|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 633.8711547851562 2 633.87084 1265.72713 0.50101 0.00031757 -0.44402 -0.00028145 0.056991 3.6125E-05 633.8706719622517 89.117 0.61712 92.51 92.437 93.055 3.3931 133 79 2 0 0 0 0.56333 1 22465 22465 1.4819 0 1 332070 + 26972 31310 16899 16908 31394 31394 0.1048917106531917 LYYNANKLL 9 Unmodified _LYYNANKLL_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|70|2|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|70|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 555.786376953125 2 556.310949 1110.60735 0.54756 0.00030461 -0.22098 -0.00012293 0.32658 0.00018168 556.3107170211192 62.409 0.52213 65.882 65.581 66.103 3.4738 60 40 2 0 0 0 0.11598 1 13937 13937 11.64 11.64 1 100690 + 26973 32478 16900 16909 31395 31395 0.05646602511410492 LYYNANKLL 9 Unmodified _LYYNANKLL_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|70|2|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|70|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 556.310949 1110.60735 0.62078 0.00034535 0.33863 0.00018839 0.95941 0.00053373 556.3110139451876 62.642 0.040951 66.104 66.073 66.114 3.4625 0.20423 0.00041931 NaN 16.942 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 39311 + 26974 32478 16900 16909 0.05646602511410492 LYYNANKLL 9 Unmodified _LYYNANKLL_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|70|2|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|70|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 556.310949 1110.60735 0.41084 0.00022855 0.056526 3.1446E-05 0.46736 0.00026 556.3109356288564 62.203 0.31045 65.714 65.554 65.865 3.5104 -0.18648 0.00010543 NaN 16.942 45 27 2 NaN NaN NaN NaN 0 NaN NaN 0 88008 + 26975 32478 16900 16909 0.05646602511410492 LYYSKMRK 8 Unmodified _LYYSKMRK_ 0 0 0 REV__L1MA4A_dup909|chr2:202798559-202799837:-|1.339738261818393|0.0265702368681205|5.66|151.0|28|2|sense REV__L1MA4A_dup909|chr2:202798559-202799837:-|1.339738261818393|0.0265702368681205|5.66|151.0|28|2|sense MSMS UPN46_class_I_Rep_3 1 544.802490234375 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 25.271 1 25.271 24.771 25.771 0 0 0 0 0.40746 1 3441 3441 0.69038 0 1 + 26976 25215 16901 16910 31396 31396 0.04454679842137921 LYYSSRVVF 9 Unmodified _LYYSSRVVF_ 0 0 0 REV__L1MC1_dup2169|chr3:15783748-15784816:+|21.28185930286726|0.0794248918522391|8.07|151.0|22|2|sense REV__L1MC1_dup2169|chr3:15783748-15784816:+|21.28185930286726|0.0794248918522391|8.07|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.3026123046875 2 567.303124 1132.5917 0.49255 0.00027942 -0.24875 -0.00014112 0.24379 0.00013831 567.3028045223717 66.349 0.26318 69.857 69.757 70.02 3.5077 21 20 2 0 0 0 0.40174 1 15063 15063 7.9102 0 1 61030 + 26977 26533 16902 16911 31397 31397 0.030703159943641367 LYYVMILY 8 Unmodified _LYYVMILY_ 0 0 0 REV__L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|146|2|anti-sense REV__L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|146|2|anti-sense MSMS UPN48_class_I_Rep_1 5 539.2900390625 2 539.288097 1076.56164 NaN NaN NaN NaN NaN NaN NaN 59.032 1 62.512 62.012 63.012 3.4801 0 0 0 0.34139 1 12935 12935 24.21 0 1 + 26978 25355 16903 16912 31398 31398 0.026422410048326128 LYYVMILY 8 Unmodified _LYYVMILY_ 0 0 0 REV__L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|146|2|anti-sense REV__L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|146|2|anti-sense MSMS UPN48_class_I_Rep_2 6 539.2909545898438 2 539.288097 1076.56164 NaN NaN NaN NaN NaN NaN NaN 59.054 1 62.553 62.053 63.053 3.4987 0 0 0 0.37152 1 12919 12919 17.087 0 1 + 26979 25355 16903 16912 31399 31399 0.026422410048326128 LYYVWDVY 8 Unmodified _LYYVWDVY_ 0 0 0 REV__L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|73|3|sense REV__L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|73|3|sense MSMS UPN48_class_I_Rep_3 7 560.7697143554688 2 560.771126 1119.5277 NaN NaN NaN NaN NaN NaN NaN 73.097 1 76.635 76.135 77.135 3.5373 0 0 0 0.40581 1 17085 17085 2.8892 0.58649 1 + 26980 27802 16904 16913 31400 31400 -0.02728464162578348 LYYWATVT 8 Unmodified _LYYWATVT_ 0 0 0 L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|16|1|sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|16|1|sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 508.8211364746094 2 508.758018 1015.50148 NaN NaN NaN NaN NaN NaN NaN 61.618 1 65.092 64.592 65.592 3.4738 0 0 0 0.40625 1 13703 13703 2.3027 0.24298 1 26981 15448 16905 16914 31401 31401 -0.005647333340562 LYYYFNFLV 9 Unmodified _LYYYFNFLV_ 0 0 0 L1MC4_dup20403|chr15:74791267-74791979:-|3.12453440976576|0.0789795645339308|5.31|151.0|8|1|sense L1MC4_dup20403|chr15:74791267-74791979:-|3.12453440976576|0.0789795645339308|5.31|151.0|8|1|sense L1MC4_dup20403|chr15:74791267-74791979:-|3.12453440976576|0.0789795645339308|5.31|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 621.3131103515625 2 621.3157 1240.61685 NaN NaN NaN NaN NaN NaN NaN 58.069 1 61.237 60.737 61.737 3.1681 0 0 0 0.40038 1 13465 13465 0.6015 0 1 26982 11449 16906 16915 31402 31402 0.006163707969335519 LYYYNFTRT 9 Unmodified _LYYYNFTRT_ 0 0 0 KMT2A|p.S2770Vfs*17|1|0.05|ENSG00000118058|chr11:118504209-118504209|A/-|frameshift_variant;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A KMT2A|p.S2770Vfs*17|1|0.05|ENSG00000118058|chr11:118504209-118504209|A/-|frameshift_variant KMT2A|p.S2770Vfs*17|1|0.05|ENSG00000118058|chr11:118504209-118504209|A/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 620.8013305664062 2 620.803488 1239.59242 NaN NaN NaN NaN NaN NaN NaN 21.077 1 24.72 24.22 25.22 3.6436 0 0 0 0.40038 1 2230 2230 0.6015 0 1 26983 2240 16907 16916 31403 31403 -0.01778889356592117 MAARRALH 8 Unmodified _MAARRALH_ 0 0 0 nc|ENSG00000167699|Q9HC38-3|GLOD4;ENST00000576239.5_1_17:674543-685513:-|nuORF;ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4 nc|ENSG00000167699|Q9HC38-3|GLOD4 nc|ENSG00000167699|Q9HC38-3|GLOD4 MULTI-MSMS UPN48_class_I_Rep_3 7 463.2690124511719 2 463.261071 924.507589 0.19046 8.8233E-05 -1.3732 -0.00063614 -1.1827 -0.00054791 463.260303193139 108.77 0.43043 112.45 112.32 112.75 3.6751 67 46 3 0 0 0 0.82752 1 25805 25805 8.5933 3.3626 1 8144000 26984 4324 16908 16917 31404 31404 0.04231506416465436 MADPNIRFL 9 Unmodified _MADPNIRFL_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MULTI-MSMS UPN48_class_I_Rep_1 5 538.7816162109375 2 538.781502 1075.54845 0.50479 0.00027197 -0.38909 -0.00020964 0.1157 6.2336E-05 538.7813620112154 59.396 0.29752 62.876 62.651 62.949 3.4801 22 17 2 0 0 0 0.43153 1 13052 13052 6.2058 2.6093 1 85367 26985 5060 16909 16918 31405 31405 0.013698029454417338 MADPNIRFL 9 Unmodified _MADPNIRFL_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MSMS UPN48_class_I_Rep_2 6 538.7808227539062 2 538.781502 1075.54845 NaN NaN NaN NaN NaN NaN NaN 59.286 1 62.773 62.273 63.273 3.4868 0 0 0 0.13613 1 12991 12991 20.415 6.9067 1 26986 5060 16909 16918 31406 31406 0.013698029454417338 MAFGRRWW 8 Unmodified _MAFGRRWW_ 0 0 0 REV__AluSz_dup77730|chr15:51923105-51923393:+|1.3981386021534092|0.0395007424594282|5.15|151.0|9|1|anti-sense REV__AluSz_dup77730|chr15:51923105-51923393:+|1.3981386021534092|0.0395007424594282|5.15|151.0|9|1|anti-sense MSMS UPN47_class_I_Rep_2 3 555.2776489257812 2 555.276721 1108.53889 NaN NaN NaN NaN NaN NaN NaN 27.208 1 30.706 30.206 31.206 3.4986 0 0 0 0.40738 1 4051 4051 0.79363 0 1 + 26987 17208 16910 16919 31407 31407 -0.01103920549439863 MAGIPNLVIQ 10 Unmodified _MAGIPNLVIQ_ 0 0 0 REV__MER44B_dup400|chr3:71378328-71378924:+|1.2369374337579448|0.0038440007526879|8.33|151.0|27|2|anti-sense REV__MER44B_dup400|chr3:71378328-71378924:+|1.2369374337579448|0.0038440007526879|8.33|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 528.2982788085938 2 528.299527 1054.5845 NaN NaN NaN NaN NaN NaN NaN 63.745 1 67.254 66.754 67.754 3.5091 0 0 0 0.53105 1 14276 14276 14.838 3.198 1 + 26988 31318 16911 16920 31408 31408 0.05939260122295309 MAHLELLL 8 Unmodified _MAHLELLL_ 0 0 0 nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B nc|ENSG00000077935|Q8NDV3-2|SMC1B nc|ENSG00000077935|Q8NDV3-2|SMC1B MSMS UPN46_class_I_Rep_3 1 470.2719421386719 2 470.270238 938.525924 NaN NaN NaN NaN NaN NaN NaN 84.146 1 84.146 83.646 84.646 0 0 0 0 0.40738 1 20007 20007 0.79363 0 1 26989 1179 16912 16921 31409 31409 0.05420203547839719 MAHTCNPSTLR 11 Unmodified _MAHTCNPSTLR_ 0 0 0 AluJb_dup121315|chr20:47509117-47509397:+|1.0022529948077|0.0080372190762225|6.96|151.0|13|3|sense AluJb_dup121315|chr20:47509117-47509397:+|1.0022529948077|0.0080372190762225|6.96|151.0|13|3|sense AluJb_dup121315|chr20:47509117-47509397:+|1.0022529948077|0.0080372190762225|6.96|151.0|13|3|sense MSMS UPN48_class_I_Rep_2 6 615.7879028320312 2 615.789532 1229.56451 NaN NaN NaN NaN NaN NaN NaN 25.627 1 29.264 28.764 29.764 3.6363 0 0 0 0.38417 1 3146 3146 1.0715 0.46996 1 26990 29 16913 16922 31410 31410 -0.04108858879976651 MAKKKKKQ 8 Unmodified _MAKKKKKQ_ 0 0 0 REV__L1PREC2_dup575|chr2:24108924-24110325:+|1.5048583890055691|0.2541788947830014|2.57|151.0|17|2|sense REV__L1PREC2_dup575|chr2:24108924-24110325:+|1.5048583890055691|0.2541788947830014|2.57|151.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 495.7958679199219 2 495.318054 988.621556 NaN NaN NaN NaN NaN NaN NaN 100.19 1 103.69 103.19 104.19 3.4974 0 0 0 0.40746 1 24514 24514 0.69038 0.69038 1 + 26991 30730 16914 16923 31411 31411 0.12678976458721536 MAKRRVKM 8 Unmodified _MAKRRVKM_ 0 0 0 L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|61|2|sense L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|61|2|sense L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|61|2|sense MSMS UPN47_class_I_Rep_2 3 510.3035583496094 2 510.301881 1018.58921 NaN NaN NaN NaN NaN NaN NaN 110.79 1 114.32 113.82 114.82 3.5271 0 0 0 0.40738 1 26970 26970 0.79363 0 1 26992 11370 16915 16924 31412 31412 0.08065865784078596 MAPTVRATIAH 11 Unmodified _MAPTVRATIAH_ 0 0 0 ENSG00000159496|ENST00000290691|RGL4;nc|ENSG00000159496|Q8IZJ4-2|RGL4 ENSG00000159496|ENST00000290691|RGL4 ENSG00000159496|ENST00000290691|RGL4 MSMS UPN46_class_I_Rep_3 1 584.34765625 2 584.318783 1166.62301 NaN NaN NaN NaN NaN NaN NaN 38.605 1 38.605 38.105 39.105 0 0 0 0 0.38417 1 7362 7362 2.086 0.24177 1 26993 3842 16916 16925 31413 31413 0.046365657568230745 MAQPFKFTY 9 Unmodified _MAQPFKFTY_ 0 0 0 REV__ENSG00000259494|ENST00000312475|MRPL46 REV__ENSG00000259494|ENST00000312475|MRPL46 MSMS UPN47_class_I_Rep_3 4 566.7767944335938 2 566.778428 1131.5423 NaN NaN NaN NaN NaN NaN NaN 48.07 1 51.31 50.81 51.81 3.2405 0 0 0 0.38916 1 10418 10418 3.2813 1.2216 1 + 26994 21392 16917 16926 31414 31414 -0.01820715286066843 MCAPEGRL 8 Unmodified _MCAPEGRL_ 0 0 0 REV__L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|289|2|anti-sense REV__L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|289|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.70635986328125 2 438.706948 875.399343 -0.45339 -0.0001989 -0.45124 -0.00019796 -0.90462 -0.00039686 438.7066246561738 18.478 1.0401 22.058 21.614 22.654 3.5806 198 124 2 0 0 0 0.82752 1 1609 1609 5.2307 0 1 100700 + 26995 29997 16918 16927 31415 31415 -0.04334045948962739 MCAPEGRL 8 Unmodified _MCAPEGRL_ 0 0 0 REV__L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|289|2|anti-sense REV__L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|289|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 438.7062072753906 2 438.706948 875.399343 -1.1651 -0.00051113 0.13685 6.0038E-05 -1.0282 -0.00045109 438.706890986306 18.705 1.0283 22.059 21.624 22.653 3.3545 175 108 2 0 0 0 0.82752 1 1519 1519 2.3027 0 1 88617 + 26996 29997 16918 16927 31416 31416 -0.04334045948962739 MCARDGQVRV 10 Unmodified _MCARDGQVRV_ 0 0 0 ENSG00000189186|ENST00000451261|DCAF8L2;ENSG00000132716|ENST00000368074|DCAF8 ENSG00000189186|ENST00000451261|DCAF8L2;ENSG00000132716|ENST00000368074|DCAF8 ENSG00000189186|ENST00000451261|DCAF8L2 MSMS UPN47_class_I_Rep_3 4 567.781494140625 2 567.778967 1133.54338 NaN NaN NaN NaN NaN NaN NaN 22.691 1 26.041 25.541 26.541 3.3503 0 0 0 0.53105 1 2758 2758 3.5965 0.60125 1 26997 5274;2772 16919 16928 31417 31417 -0.018048241888209304 MCCCPCMWF 9 Unmodified _MCCCPCMWF_ 0 0 0 REV__L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|58|3|anti-sense REV__L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_1 2 562.2412109375 2 562.171658 1122.32876 NaN NaN NaN NaN NaN NaN NaN 50.639 1 54.267 53.767 54.767 3.6285 0 0 0 0.4029 1 11121 11121 0 0 1 + 26998 27671 16920 16929 31418 31418 -0.22750869916444572 MCCCPCMWF 9 Unmodified _MCCCPCMWF_ 0 0 0 REV__L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|58|3|anti-sense REV__L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_3 4 562.334228515625 2 562.171658 1122.32876 NaN NaN NaN NaN NaN NaN NaN 13.734 1 17.105 16.605 17.605 3.3711 0 0 0 0.4029 1 380 380 0 0 1 + 26999 27671 16920 16929 31419 31419 -0.22750869916444572 MCCHCSAP 8 Unmodified _MCCHCSAP_ 0 0 0 L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|108|2|anti-sense;L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|61|1|anti-sense L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|108|2|anti-sense L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|108|2|anti-sense MSMS UPN46_class_I_Rep_3 1 426.1371765136719 2 426.136987 850.259421 NaN NaN NaN NaN NaN NaN NaN 95.884 1 95.884 95.384 96.384 0 0 0 0 0.40746 1 23296 23296 0.69038 0 1 27000 13677 16921 16930 31420 31420 -0.17169869549354644 MCCHCSAP 8 Unmodified _MCCHCSAP_ 0 0 0 L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|108|2|anti-sense;L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|61|1|anti-sense L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|108|2|anti-sense L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|108|2|anti-sense MSMS UPN47_class_I_Rep_3 4 426.1371154785156 2 426.136987 850.259421 NaN NaN NaN NaN NaN NaN NaN 101.66 1 105.15 104.65 105.65 3.4873 0 0 0 0.40738 1 25042 25042 0.79363 0 1 27001 13677 16921 16930 31421 31421 -0.17169869549354644 MCCICFFFY 9 Unmodified _MCCICFFFY_ 0 0 0 REV__L1MA3_dup6552|chr11:93712895-93714249:-|1.8990506994804|0.1041638125050561|4.19|151.0|51|1|anti-sense REV__L1MA3_dup6552|chr11:93712895-93714249:-|1.8990506994804|0.1041638125050561|4.19|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 588.722412109375 2 588.722895 1175.43124 NaN NaN NaN NaN NaN NaN NaN 18.048 1 21.406 20.906 21.906 3.3581 0 0 0 0.40038 1 1427 1427 0.6015 0 1 + 27002 25085 16922 16931 31422 31422 -0.14946137581659968 MCCMPLGY 8 Unmodified _MCCMPLGY_ 0 0 0 L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|92|3|anti-sense L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|92|3|anti-sense L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|92|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.17181396484375 2 459.173038 916.331523 NaN NaN NaN NaN NaN NaN NaN 24.169 1 24.169 23.669 24.669 0 0 0 0 0.40738 1 3140 3140 0.79363 0 1 27003 9009 16923 16932 31423 31423 -0.1299895519563279 MCCSDEMG 8 Unmodified _MCCSDEMG_ 0 0 0 L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|25|1|sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|25|1|sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|25|1|sense MSMS UPN47_class_I_Rep_1 2 438.1233825683594 2 438.123742 874.232931 NaN NaN NaN NaN NaN NaN NaN 98.76 1 102.55 102.05 103.05 3.7926 0 0 0 0.40746 1 24444 24444 0.69038 0.69038 1 27004 14770 16924 16933 31424 31424 -0.209216032313293 MCEKCCSCNGE 11 Unmodified _MCEKCCSCNGE_ 0 0 0 REV__ENSG00000128791|ENST00000262120|TWSG1 REV__ENSG00000128791|ENST00000262120|TWSG1 MSMS UPN47_class_I_Rep_2 3 603.688720703125 2 603.689454 1205.36436 NaN NaN NaN NaN NaN NaN NaN 119.99 1 123.47 122.97 123.97 3.4777 0 0 0 0.38417 1 29415 29415 1.1933 0.59184 1 + 27005 18908 16925 16934 31425 31425 -0.23011160925761942 MCESASWYYN 10 Unmodified _MCESASWYYN_ 0 0 0 REV__nc|ENSG00000169925|Q15059-2|BRD3 REV__nc|ENSG00000169925|Q15059-2|BRD3 MSMS UPN48_class_I_Rep_3 7 627.2333374023438 2 627.233724 1252.45289 NaN NaN NaN NaN NaN NaN NaN 21.382 1 25.049 24.549 25.549 3.6667 0 0 0 0.53105 1 1996 1996 1.4819 0.8804 1 + 27006 20335 16926 16935 31426 31426 -0.16323338027746104 MCFVGLWVT 9 Unmodified _MCFVGLWVT_ 0 0 0 LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|54|3|sense LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|54|3|sense LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|54|3|sense MSMS UPN47_class_I_Rep_2 3 528.256591796875 2 528.256274 1054.49799 NaN NaN NaN NaN NaN NaN NaN 86.539 1 89.98 89.48 90.48 3.4407 0 0 0 0.35339 1 21524 21524 7.9102 0.62092 1 27007 15503 16927 16936 31427 31427 -0.027074427038996873 MCGLQSHLPFT 11 Unmodified _MCGLQSHLPFT_ 0 0 0 REV__Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|42|1|anti-sense REV__Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 617.2915649414062 2 617.291376 1232.5682 0.25464 0.00015719 -0.80624 -0.00049769 -0.5516 -0.0003405 617.290835335714 49.228 0.48774 52.887 52.513 53 3.6592 60 35 2 0 0 0 0.61292 1 10709 10709 4.897 0 1 161400 + 27008 32569 16928 16937 31428 31428 -0.038781891061262286 MCGLQSHLPFT 11 Unmodified _MCGLQSHLPFT_ 0 0 0 REV__Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|42|1|anti-sense REV__Tigger1_dup944|chr1:243151338-243152222:+|1.7651516573124486|0.1271653322596496|3.8|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 617.2913208007812 2 617.291376 1232.5682 0.49638 0.00030641 -0.78617 -0.0004853 -0.28979 -0.00017888 617.290642219344 59.952 0.87551 63.225 62.832 63.707 3.2731 106 54 3 0 0 0 0.61292 1 14088 14088 4.897 0 1 216620 + 27009 32569 16928 16937 31429 31429 -0.038781891061262286 MCHDTKSPL 9 Unmodified _MCHDTKSPL_ 0 0 0 REV__ENSG00000174225|ENST00000450049|ARL13A REV__ENSG00000174225|ENST00000450049|ARL13A MSMS UPN47_class_I_Rep_1 2 516.2354736328125 2 516.23607 1030.45759 NaN NaN NaN NaN NaN NaN NaN 29.598 1 33.356 32.856 33.856 3.7578 0 0 0 0.39518 1 4724 4724 1.8442 0 1 + 27010 20511 16929 16938 31430 31430 -0.05642409094343748 MCHDTKSPL 9 Unmodified _MCHDTKSPL_ 0 0 0 REV__ENSG00000174225|ENST00000450049|ARL13A REV__ENSG00000174225|ENST00000450049|ARL13A MSMS UPN47_class_I_Rep_1 2 516.23681640625 2 516.23607 1030.45759 NaN NaN NaN NaN NaN NaN NaN 29.647 1 33.405 32.905 33.905 3.7578 0 0 0 0.39518 1 4739 4739 1.8442 0 1 + 27011 20511 16929 16938 31431 31431 -0.05642409094343748 MCHINRMKK 9 Unmodified _MCHINRMKK_ 0 0 0 L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|1|1|sense L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|1|1|sense L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 580.2933959960938 2 580.796106 1159.57766 0.44331 0.00025747 -3.0532 -0.0017733 -2.6099 -0.0015158 580.7942831635148 58.808 0.065624 62.331 62.276 62.342 3.5231 6 4 2 0 0 0 0.12462 1 12775 12775 1.8442 0.36234 1 43025 27012 9340 16930 16939 31432 31432 0.004253006984072272 MCHRLIFI 8 Unmodified _MCHRLIFI_ 0 0 0 REV__L1ME3F_dup1815|chr6:110647531-110648524:+|1.0521429893680538|0.0072926394108349|7.17|151.0|64|3|anti-sense REV__L1ME3F_dup1815|chr6:110647531-110648524:+|1.0521429893680538|0.0072926394108349|7.17|151.0|64|3|anti-sense MSMS UPN48_class_I_Rep_3 7 516.7785034179688 2 516.777708 1031.54086 NaN NaN NaN NaN NaN NaN NaN 44.943 1 48.581 48.081 49.081 3.6372 0 0 0 0.40738 1 8549 8549 0.79363 0 1 + 27013 28170 16931 16940 31433 31433 0.026353721441864764 MCHSGHPL 8 Unmodified _MCHSGHPL_ 0 0 0 REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF REV__ENST00000547505.2_1_12:44054435-44054633:+|nuORF MSMS UPN47_class_I_Rep_1 2 440.79962158203125 2 441.191465 880.368377 NaN NaN NaN NaN NaN NaN NaN 89.333 1 93.006 92.506 93.506 3.6738 0 0 0 0.40581 1 22336 22336 2.8892 0.31174 1 + 27014 22945 16932 16941 31434 31434 -0.07659199263184746 MCHWTNKLFT 10 Unmodified _MCHWTNKLFT_ 0 0 0 REV__LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|7|2|sense REV__LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 640.800048828125 2 640.799368 1279.58418 NaN NaN NaN NaN NaN NaN NaN 43.83 1 47.468 46.968 47.968 3.6385 0 0 0 0.53105 1 8204 8204 1.4819 0 1 + 27015 30989 16933 16942 31435 31435 -0.044424828692172014 MCICDYLK 8 Unmodified _MCICDYLK_ 0 0 0 REV__L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense REV__L1MB7_dup7171|chr5:177157680-177158237:-|1.4749375601679915|0.0251888396375252|5.87|151.0|21|3|sense MSMS UPN47_class_I_Rep_3 4 494.7192687988281 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 68.787 1 71.985 71.485 72.485 3.1977 0 0 0 0.40746 1 16735 16735 0.69038 0 1 + 27016 26301 16934 16943 31436 31436 -0.0714336822666155 MCIHHVVL 8 Unmodified _MCIHHVVL_ 0 0 0 L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|361|3|anti-sense L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|361|3|anti-sense L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|361|3|anti-sense MSMS UPN47_class_I_Rep_1 2 476.2492370605469 2 476.248783 950.483013 NaN NaN NaN NaN NaN NaN NaN 31.648 1 35.377 34.877 35.877 3.7293 0 0 0 0.40581 1 5340 5340 2.8892 0 1 27017 14384 16935 16944 31437 31437 0.005791102187458819 MCIYRHYL 8 Unmodified _MCIYRHYL_ 0 0 0 REV__MER44B_dup9|chr1:28417219-28417737:-|1.2694274910017658|0.0118952980935358|6.74|151.0|11|2|sense REV__MER44B_dup9|chr1:28417219-28417737:-|1.2694274910017658|0.0118952980935358|6.74|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 549.7660522460938 2 549.764797 1097.51504 NaN NaN NaN NaN NaN NaN NaN 31.907 1 31.907 31.407 32.407 0 0 0 0 0.40738 1 5391 5391 0.79363 0 1 + 27018 31322 16936 16945 31438 31438 -0.029815220981163293 MCKCALML 8 Unmodified _MCKCALML_ 0 0 0 nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1 nc|ENSG00000154188|Q15389-2|ANGPT1 nc|ENSG00000154188|Q15389-2|ANGPT1 MSMS UPN46_class_I_Rep_3 1 456.2811584472656 2 456.71233 911.410108 NaN NaN NaN NaN NaN NaN NaN 116.03 1 116.03 115.53 116.53 0 0 0 0 0.40738 1 28712 28712 0.79363 0 1 27019 3663 16937 16946 31439 31439 -0.04914102890541017 MCLGEGECSDH 11 Unmodified _MCLGEGECSDH_ 0 0 0 L1M1_dup4871|chrX:101449217-101451659:-|2.9767660781045637|0.4724885938490638|2.66|151.0|61|3|sense L1M1_dup4871|chrX:101449217-101451659:-|2.9767660781045637|0.4724885938490638|2.66|151.0|61|3|sense L1M1_dup4871|chrX:101449217-101451659:-|2.9767660781045637|0.4724885938490638|2.66|151.0|61|3|sense MSMS UPN47_class_I_Rep_2 3 590.7069702148438 2 590.707016 1179.39948 NaN NaN NaN NaN NaN NaN NaN 24.583 1 28.063 27.563 28.563 3.48 0 0 0 0.38417 1 3281 3281 2.9952 1.6657 1 27020 8589 16938 16947 31440 31440 -0.18304458801912915 MCLGEGECSDH 11 Unmodified _MCLGEGECSDH_ 0 0 0 L1M1_dup4871|chrX:101449217-101451659:-|2.9767660781045637|0.4724885938490638|2.66|151.0|61|3|sense L1M1_dup4871|chrX:101449217-101451659:-|2.9767660781045637|0.4724885938490638|2.66|151.0|61|3|sense L1M1_dup4871|chrX:101449217-101451659:-|2.9767660781045637|0.4724885938490638|2.66|151.0|61|3|sense MSMS UPN48_class_I_Rep_1 5 590.70751953125 2 590.707016 1179.39948 NaN NaN NaN NaN NaN NaN NaN 113.39 1 117.02 116.52 117.52 3.6314 0 0 0 0.38417 1 27546 27546 1.3295 0.5359 1 27021 8589 16938 16947 31441 31441 -0.18304458801912915 MCLKIRHG 8 Unmodified _MCLKIRHG_ 0 0 0 ENST00000560775.5_2_15:44957948-44957987:-|nuORF ENST00000560775.5_2_15:44957948-44957987:-|nuORF ENST00000560775.5_2_15:44957948-44957987:-|nuORF MSMS UPN47_class_I_Rep_1 2 479.2579040527344 2 479.259682 956.504811 NaN NaN NaN NaN NaN NaN NaN 116.95 1 120.56 120.06 121.06 3.6036 0 0 0 0.40738 1 28979 28979 0.79363 0 1 27022 7455 16939 16948 31442 31442 0.024819149673135144 MCLMTFYLR 9 Unmodified _MCLMTFYLR_ 0 0 0 REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|168|3|anti-sense REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|168|3|anti-sense MSMS UPN47_class_I_Rep_1 2 589.2819213867188 2 589.281966 1176.54938 NaN NaN NaN NaN NaN NaN NaN 24.502 1 28.232 27.732 28.732 3.7298 0 0 0 0.4007 1 3213 3213 0.52476 0 1 + 27023 24908 16940 16949 31443 31443 -0.031834420015229625 MCMCTNKYY 9 Unmodified _MCMCTNKYY_ 0 0 0 REV__L1PA11_dup101|chr1:93220621-93221448:-|1.1685258399666305|0.284535592050406|2.04|151.0|11|2|sense REV__L1PA11_dup101|chr1:93220621-93221448:-|1.1685258399666305|0.284535592050406|2.04|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 578.7205200195312 2 578.718341 1155.42213 NaN NaN NaN NaN NaN NaN NaN 78.975 1 82.33 81.83 82.83 3.3554 0 0 0 0.2088 1 19637 19637 15.847 1.2655 1 + 27024 28995 16941 16950 31444 31444 -0.14936530938007309 MCMEVGCC 8 Unmodified _MCMEVGCC_ 0 0 0 HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|95|2|anti-sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|95|2|anti-sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|95|2|anti-sense MSMS UPN48_class_I_Rep_1 5 437.8929138183594 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 86.016 1 89.629 89.129 90.129 3.613 0 0 0 0.40738 1 20597 20597 0.79363 0.10326 1 27025 8268 16942 16951 31445 31445 -0.1905976486112877 MCMHVPCWC 9 Unmodified _MCMHVPCWC_ 0 0 0 L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|219|3|anti-sense L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|219|3|anti-sense L1PA5_dup10315|chr17:5574963-5579269:+|1.2359576391923697|0.0751115418932982|4.04|151.0|219|3|anti-sense MSMS UPN48_class_I_Rep_3 7 555.196533203125 2 555.196521 1108.37849 NaN NaN NaN NaN NaN NaN NaN 22.081 1 25.795 25.295 26.295 3.7144 0 0 0 0.4029 1 2196 2196 0 0 1 27026 14419 16943 16952 31446 31446 -0.17136418916129514 MCRFEVTF 8 Unmodified _MCRFEVTF_ 0 0 0 ENST00000476321.5_1_1:110279982-110280760:-|nuORF ENST00000476321.5_1_1:110279982-110280760:-|nuORF ENST00000476321.5_1_1:110279982-110280760:-|nuORF MSMS UPN48_class_I_Rep_3 7 516.7354125976562 2 516.735706 1031.45686 NaN NaN NaN NaN NaN NaN NaN 50.106 1 53.727 53.227 54.227 3.621 0 0 0 0.38547 1 10130 10130 13.508 0 1 27027 6968 16944 16953 31447 31447 -0.057612037433955265 MCSGIMMDLY 10 Unmodified _MCSGIMMDLY_ 0 0 0 HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|42|1|sense HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|42|1|sense HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|42|1|sense MSMS UPN47_class_I_Rep_1 2 582.2318115234375 2 582.233824 1162.45309 NaN NaN NaN NaN NaN NaN NaN 63.197 1 66.557 66.057 67.057 3.3595 0 0 0 0.53105 1 14938 14938 6.7232 0.36906 1 27028 8216 16945 16954 31448 31448 -0.12163377623755878 MCTCTDEYCF 10 Unmodified _MCTCTDEYCF_ 0 0 0 REV__L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense REV__L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 405.7977294921875 3 405.799023 1214.37524 NaN NaN NaN NaN NaN NaN NaN 40.53 1 43.902 43.402 44.402 3.3712 0 0 0 0.53105 1 8080 8080 0.15932 0 1 + 27029 29088 16946 16955 31449 31449 -0.22337435279837337 MCTCTDEYCF 10 Unmodified _MCTCTDEYCF_ 0 0 0 REV__L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense REV__L1PA13_dup1794|chr4:25759918-25760642:-|1.2631663342433932|0.1992094418140311|2.66|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 405.7981262207031 3 405.799023 1214.37524 NaN NaN NaN NaN NaN NaN NaN 23.865 1 27.504 27.004 28.004 3.6397 0 0 0 0.53105 1 2674 2674 0.15932 0.15932 1 + 27030 29088 16946 16955 31450 31450 -0.22337435279837337 MDDLSPKWCY 10 Unmodified _MDDLSPKWCY_ 0 0 0 ENST00000478384.5_1_X:133905317-133923123:-|nuORF ENST00000478384.5_1_X:133905317-133923123:-|nuORF ENST00000478384.5_1_X:133905317-133923123:-|nuORF MSMS UPN47_class_I_Rep_2 3 629.2665405273438 2 629.267567 1256.52058 NaN NaN NaN NaN NaN NaN NaN 115.52 1 119.02 118.52 119.52 3.5039 0 0 0 0.53105 1 28166 28166 1.3295 0.72803 1 27031 6981 16947 16956 31451 31451 -0.09741888096959883 MDECEFVC 8 Unmodified _MDECEFVC_ 0 0 0 REV__THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|34|2|sense REV__THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|34|2|sense MSMS UPN47_class_I_Rep_3 4 488.16717529296875 2 488.166464 974.318375 NaN NaN NaN NaN NaN NaN NaN 38.699 1 41.937 41.437 42.437 3.238 0 0 0 0.40604 1 7564 7564 2.5775 0 1 + 27032 32309 16948 16957 31452 31452 -0.16981114774023354 MDEGRKQL 8 Unmodified _MDEGRKQL_ 0 0 0 nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13 nc|ENSG00000010165|Q8N6R0-1|METTL13 nc|ENSG00000010165|Q8N6R0-1|METTL13 MULTI-MSMS UPN47_class_I_Rep_1 2 488.7482604980469 2 488.747659 975.480765 0.11515 5.6282E-05 0.17299 8.4549E-05 0.28815 0.00014083 488.7478491268591 69.476 0.54456 72.844 72.572 73.117 3.3678 80 48 2 0 0 0 0.82752 2 16826 16826;16885 4.756 0.81161 1 114550 27033 751 16949 16958 31453;31454 31453 -0.007956469853752424 MDEGRKQL 8 Unmodified _MDEGRKQL_ 0 0 0 nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13 nc|ENSG00000010165|Q8N6R0-1|METTL13 nc|ENSG00000010165|Q8N6R0-1|METTL13 MULTI-MSMS UPN47_class_I_Rep_2 3 488.74761962890625 2 488.747659 975.480765 0.23186 0.00011332 0.023621 1.1545E-05 0.25548 0.00012487 488.747707063418 69.79 0.69875 73.066 72.786 73.485 3.2761 84 59 2 0 0 0 0.82752 1 16961 16961 4.756 0.81161 1 92118 27034 751 16949 16958 31455 31455 -0.007956469853752424 MDEGRKQL 8 Unmodified _MDEGRKQL_ 0 0 0 nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13 nc|ENSG00000010165|Q8N6R0-1|METTL13 nc|ENSG00000010165|Q8N6R0-1|METTL13 MULTI-MSMS UPN47_class_I_Rep_3 4 488.7476501464844 2 488.747659 975.480765 0.17938 8.7673E-05 0.26585 0.00012993 0.44524 0.00021761 488.74788898240837 69.78 0.57728 72.985 72.697 73.274 3.2044 54 44 2 0 0 0 0.82752 2 17006 17006;17048 4.756 0.81161 1 87800 27035 751 16949 16958 31456;31457 31456 -0.007956469853752424 MDEIYFLTFKR 11 Unmodified _MDEIYFLTFKR_ 0 0 0 ENSG00000189180.16,ZNF33A,chr10,+,I1.1,38010784,38012297|53|8.29|1|intron ENSG00000189180.16,ZNF33A,chr10,+,I1.1,38010784,38012297|53|8.29|1|intron ENSG00000189180.16,ZNF33A,chr10,+,I1.1,38010784,38012297|53|8.29|1|intron MULTI-SECPEP UPN48_class_I_Rep_1 5 487.9172668457031 3 488.251484 1461.73262 0.17493 8.5412E-05 0.66858 0.00032643 0.84351 0.00041184 488.25183189217177 53.612 0.11612 57.126 57.079 57.196 3.5143 12 8 2 0 0 0 22.551 1 11269 11269 1.3296 0.82369 1 68530 27036 5273 16950 16959 31458 31458 0.020225265854605823 MDEKILLN 8 Unmodified _MDEKILLN_ 0 0 0 REV__nc|ENSG00000144285|P35498-3|SCN1A REV__nc|ENSG00000144285|P35498-3|SCN1A MSMS UPN46_class_I_Rep_3 1 488.26409912109375 2 488.26261 974.510668 NaN NaN NaN NaN NaN NaN NaN 70.539 1 70.539 70.039 71.039 0 0 0 0 0.40604 1 16215 16215 2.5775 0 1 + 27037 19480 16951 16960 31459 31459 0.022392919599838024 MDEKILLN 8 Unmodified _MDEKILLN_ 0 0 0 REV__nc|ENSG00000144285|P35498-3|SCN1A REV__nc|ENSG00000144285|P35498-3|SCN1A MSMS UPN46_class_I_Rep_3 1 488.2430419921875 2 488.26261 974.510668 NaN NaN NaN NaN NaN NaN NaN 84.484 1 84.484 83.984 84.984 0 0 0 0 0.40604 1 20101 20101 2.5775 0 1 + 27038 19480 16951 16960 31460 31460 0.022392919599838024 MDELEAIIP 9 Unmodified _MDELEAIIP_ 0 0 0 L1PA15_dup8070|chr20:45032266-45033564:-|1.9858945879209156|0.0196555184084869|6.66|151.0|15|1|sense L1PA15_dup8070|chr20:45032266-45033564:-|1.9858945879209156|0.0196555184084869|6.66|151.0|15|1|sense L1PA15_dup8070|chr20:45032266-45033564:-|1.9858945879209156|0.0196555184084869|6.66|151.0|15|1|sense MSMS UPN47_class_I_Rep_2 3 515.7616577148438 2 515.759901 1029.50525 NaN NaN NaN NaN NaN NaN NaN 25.579 1 29.062 28.562 29.562 3.483 0 0 0 0.39428 1 3573 3573 2.0598 1.2661 1 27039 13991 16952 16961 31461 31461 -0.008324316225071016 MDELRWYHITV 11 Unmodified _MDELRWYHITV_ 0 0 0 nc|ENSG00000206120|Q0D2K5|EGFEM1P nc|ENSG00000206120|Q0D2K5|EGFEM1P nc|ENSG00000206120|Q0D2K5|EGFEM1P MSMS UPN47_class_I_Rep_2 3 488.2432861328125 3 488.2431 1461.70747 NaN NaN NaN NaN NaN NaN NaN 117.25 1 120.74 120.24 121.24 3.4891 0 0 0 0.38417 1 28647 28647 2.8433 2.3888 1 27040 16810 16953 16962 31462 31462 -0.004915282170941282 MDEPLQPTT 9 Unmodified _MDEPLQPTT_ 0 0 0 REV__ENSG00000216937|ENST00000639629|CCDC7 REV__ENSG00000216937|ENST00000639629|CCDC7 MSMS UPN48_class_I_Rep_2 6 516.4098510742188 2 516.239332 1030.46411 NaN NaN NaN NaN NaN NaN NaN 25.158 1 28.794 28.294 29.294 3.6363 0 0 0 0.39428 1 3024 3024 2.0598 0 1 + 27041 21277 16954 16963 31463 31463 -0.049901926619895676 MDEVAGIVAA 10 Unmodified _MDEVAGIVAA_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MSMS UPN47_class_I_Rep_1 2 488.2432556152344 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 117.83 1 121.43 120.93 121.93 3.6036 0 0 0 0.53105 1 29221 29221 3.9444 1.3669 1 27042 1429 16955 16964 31464 31464 -0.013975849367398041 MDEVAGIVAA 10 Unmodified _MDEVAGIVAA_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MSMS UPN47_class_I_Rep_2 3 488.2427062988281 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.76 1 122.24 121.74 122.74 3.4822 0 0 0 0.53105 1 29072 29072 3.5965 1.019 1 27043 1429 16955 16964 31465 31465 -0.013975849367398041 MDEVAGIVAA 10 Unmodified _MDEVAGIVAA_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MSMS UPN47_class_I_Rep_3 4 488.242919921875 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 25.708 1 29.055 28.555 29.555 3.3478 0 0 0 0.53105 1 3655 3655 3.9444 1.3669 1 27044 1429 16955 16964 31466 31466 -0.013975849367398041 MDEVAGIVAA 10 Unmodified _MDEVAGIVAA_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MSMS UPN48_class_I_Rep_2 6 487.7909240722656 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 77.333 1 80.944 80.444 81.444 3.6116 0 0 0 0.53105 1 18298 18298 3.9444 0.94915 1 27045 1429 16955 16964 31467 31467 -0.013975849367398041 MDFKKIRPNN 10 Unmodified _MDFKKIRPNN_ 0 0 0 L1MA3_dup8538|chr20:1350530-1352143:-|2.9183354059170403|0.2243742372995586|3.7|151.0|37|3|sense L1MA3_dup8538|chr20:1350530-1352143:-|2.9183354059170403|0.2243742372995586|3.7|151.0|37|3|sense L1MA3_dup8538|chr20:1350530-1352143:-|2.9183354059170403|0.2243742372995586|3.7|151.0|37|3|sense MSMS UPN48_class_I_Rep_2 6 631.8374633789062 2 631.837339 1261.66013 NaN NaN NaN NaN NaN NaN NaN 65.558 1 69.037 68.537 69.537 3.4792 0 0 0 0.53105 1 14910 14910 1.6526 0 1 27046 9646 16956 16965 31468 31468 0.039762373026178466 MDISEYLIQ 9 Unmodified _MDISEYLIQ_ 0 0 0 REV__L1MB8_dup13344|chr15:65683727-65684818:-|3.2000572877388573|0.2576396025272273|3.63|151.0|41|3|sense REV__L1MB8_dup13344|chr15:65683727-65684818:-|3.2000572877388573|0.2576396025272273|3.63|151.0|41|3|sense MSMS UPN47_class_I_Rep_2 3 556.2887573242188 2 556.270632 1110.52671 NaN NaN NaN NaN NaN NaN NaN 59.058 1 62.34 61.84 62.84 3.2818 0 0 0 0.25702 1 13719 13719 13.042 2.9685 1 + 27047 26367 16957 16966 31469 31469 -0.024130465938014822 MDKEIVVYI 9 Unmodified _MDKEIVVYI_ 0 0 0 L1MA4_dup5225|chr9:19100450-19101236:+|2.832883398980465|0.170681405785271|4.05|151.0|22|3|sense;L1MA9_dup11044|chr10:103140219-103141124:-|2.572206323402328|0.1180390823513023|4.45|151.0|33|3|sense L1MA4_dup5225|chr9:19100450-19101236:+|2.832883398980465|0.170681405785271|4.05|151.0|22|3|sense L1MA4_dup5225|chr9:19100450-19101236:+|2.832883398980465|0.170681405785271|4.05|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 555.299560546875 2 555.299193 1108.58383 0.42012 0.00023329 -0.25708 -0.00014276 0.16303 9.0533E-05 555.2990159529903 77.142 1.1049 80.557 79.841 80.946 3.4149 181 103 2 0 0 0 0.21527 1 19144 19144 19.257 0 1 220600 27048 9699 16958 16967 31470 31470 0.03388420682586002 MDLFKAIPGK 10 Unmodified _MDLFKAIPGK_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MSMS UPN48_class_I_Rep_2 6 560.3158569335938 2 560.315177 1118.6158 NaN NaN NaN NaN NaN NaN NaN 59.41 1 62.896 62.396 63.396 3.4868 0 0 0 0.53105 1 13030 13030 1.3295 0.63916 1 + 27049 19199 16959 16968 31471 31471 0.06123833156402725 MDLHTGWFL 9 Unmodified _MDLHTGWFL_ 0 0 0 nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 MSMS UPN47_class_I_Rep_2 3 560.2708129882812 2 560.268227 1118.5219 NaN NaN NaN NaN NaN NaN NaN 50.846 1 54.185 53.685 54.685 3.3386 0 0 0 0.39428 1 11212 11212 2.0598 0.21551 1 27050 2147 16960 16969 31472 31472 -0.03261885945880749 MDLPLAEEEE 10 Unmodified _MDLPLAEEEE_ 0 0 0 REV__ENST00000463649.5_1_10:96117838-96122595:-|nuORF REV__ENST00000463649.5_1_10:96117838-96122595:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 588.2593994140625 2 588.260462 1174.50637 0.04017 2.363E-05 0.44797 0.00026352 0.48814 0.00028715 588.2606669126162 42.976 0.81294 46.663 46.225 47.038 3.6875 113 57 3 0 0 0 0.56078 1 8727 8727 3.2813 3.2813 1 148830 + 27051 20473 16961 16970 31473 31473 -0.07390262044259543 MDLPLAEEEE 10 Unmodified _MDLPLAEEEE_ 0 0 0 REV__ENST00000463649.5_1_10:96117838-96122595:-|nuORF REV__ENST00000463649.5_1_10:96117838-96122595:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 588.260462 1174.50637 0.04017 2.363E-05 0.44797 0.00026352 0.48814 0.00028715 588.2606669126162 42.976 0.81294 46.663 46.225 47.038 3.6875 -0.17112 1.1435E-05 NaN 3.2813 113 57 3 NaN NaN NaN NaN 0 NaN NaN 0 148830 + 27052 20473 16961 16970 -0.07390262044259543 MDLPLAEEEE 10 Unmodified _MDLPLAEEEE_ 0 0 0 REV__ENST00000463649.5_1_10:96117838-96122595:-|nuORF REV__ENST00000463649.5_1_10:96117838-96122595:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 588.260462 1174.50637 0.14444 8.4966E-05 0.15703 9.2373E-05 0.30146 0.00017734 588.7617685154668 43.647 0.10657 47.005 46.953 47.059 3.358 0.17112 -0.00033086 NaN 3.2813 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 44156 + 27053 20473 16961 16970 -0.07390262044259543 MDMSDPNF 8 Unmodified _MDMSDPNF_ 0 0 0 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 MSMS UPN48_class_I_Rep_2 6 478.5995178222656 2 478.678053 955.341554 NaN NaN NaN NaN NaN NaN NaN 39.568 1 43.298 42.798 43.798 3.7297 0 0 0 0.40604 1 7036 7036 2.5775 0 1 27054 16634 16962 16971 31474 31474 -0.13790352665046157 MDPEKMQTY 9 Unmodified _MDPEKMQTY_ 0 0 0 L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|72|3|sense L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|72|3|sense L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|72|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.7457275390625 2 571.746467 1141.47838 -0.42443 -0.00024266 0.19151 0.00010949 -0.23292 -0.00013317 571.7464259037934 14.209 0.21418 17.578 17.47 17.685 3.3697 41 24 2 0 0 0 0.49187 1 511 511 1.4819 0 1 48323 27055 10001 16963 16972 31475 31475 -0.08669863505315334 MDPLDHYWY 9 Unmodified _MDPLDHYWY_ 0 0 0 REV__L1MC3_dup6668|chr9:33881483-33882281:-|1.4496602081746168|0.0137805980324767|6.72|151.0|5|1|sense REV__L1MC3_dup6668|chr9:33881483-33882281:-|1.4496602081746168|0.0137805980324767|6.72|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 620.2589111328125 2 620.260599 1238.50665 NaN NaN NaN NaN NaN NaN NaN 71.976 1 75.502 75.002 76.002 3.5266 0 0 0 0.39518 1 16750 16750 1.8442 0.19162 1 + 27056 26771 16964 16973 31476 31476 -0.10306797533735335 MDSPRGRRIQ 10 Unmodified _MDSPRGRRIQ_ 0 0 0 ENST00000370574.3_2_1:86146561-86167885:-|nuORF ENST00000370574.3_2_1:86146561-86167885:-|nuORF ENST00000370574.3_2_1:86146561-86167885:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 405.8842468261719 3 405.884017 1214.63022 0.14569 5.9133E-05 0.23195 9.4146E-05 0.37764 0.00015328 405.8840305998492 67.025 0.34801 70.533 70.344 70.692 3.5077 35 23 2 0 0 0 0.56433 1 15302 15302 0.77653 0.078866 1 85553 27057 6384 16965 16974 31477 31477 0.031492983572661615 MEAHGRDS 8 Unmodified _MEAHGRDS_ 0 0 0 REV__nc|ENSG00000163803|Q6P1J6-3|PLB1 REV__nc|ENSG00000163803|Q6P1J6-3|PLB1 MSMS UPN48_class_I_Rep_1 5 451.6924743652344 2 451.692884 901.371214 NaN NaN NaN NaN NaN NaN NaN 63.035 1 66.497 65.997 66.997 3.4625 0 0 0 0.40625 1 14157 14157 2.3027 0 1 + 27058 20005 16966 16975 31478 31478 -0.08341652604690353 MEANKLTYI 9 Unmodified _MEANKLTYI_ 0 0 0 REV__ENSG00000181958|ENST00000641526|OR4A15 REV__ENSG00000181958|ENST00000641526|OR4A15 MULTI-MSMS UPN48_class_I_Rep_2 6 541.7886962890625 2 541.781167 1081.54778 0.38144 0.00020666 0.88028 0.00047692 1.2617 0.00068357 541.781478723347 47.58 0.66078 51.316 51.049 51.709 3.7361 80 51 2 0 0 0 0.43982 1 9338 9338 5.7319 0.50118 1 154250 + 27059 20743 16967 16976 31479 31479 0.010269635057284177 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN46_class_I_Rep_3 1 554.32275390625 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 76.974 1 76.974 76.474 77.474 0 0 0 0 0.53105 1 17975 17975 0 0 1 27060 8347 16968 16977 31480 31480 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.1756591796875 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 114.79 1 118.37 117.87 118.87 3.5809 0 0 0 0.53105 1 28376 28376 0 0 1 27061 8347 16968 16977 31481 31481 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.1756591796875 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 118.27 1 121.87 121.37 122.37 3.6036 0 0 0 0.53105 1 29347 29347 0 0 1 27062 8347 16968 16977 31482 31482 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1758422851562 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 17.581 1 21.107 20.607 21.607 3.5261 0 0 0 0.53105 1 1044 1044 0 0 1 27063 8347 16968 16977 31483 31483 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1759643554688 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 18.197 1 21.729 21.229 22.229 3.5313 0 0 0 0.53105 1 1184 1184 0 0 1 27064 8347 16968 16977 31484 31484 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1756591796875 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 19.012 1 22.544 22.044 23.044 3.5313 0 0 0 0.53105 1 1372 1372 0 0 1 27065 8347 16968 16977 31485 31485 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1764526367188 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 19.168 1 22.706 22.206 23.206 3.5378 0 0 0 0.53105 1 1407 1407 0 0 1 27066 8347 16968 16977 31486 31486 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.17529296875 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 19.99 1 23.528 23.028 24.028 3.5378 0 0 0 0.53105 1 1609 1609 0 0 1 27067 8347 16968 16977 31487 31487 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1754150390625 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 22.374 1 25.935 25.435 26.435 3.5605 0 0 0 0.53105 1 2175 2175 0 0 1 27068 8347 16968 16977 31488 31488 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.1752319335938 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 115.21 1 118.84 118.34 119.34 3.6282 0 0 0 0.53105 1 28022 28022 0 0 1 27069 8347 16968 16977 31489 31489 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1757202148438 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 24.469 1 28.109 27.609 28.609 3.6397 0 0 0 0.53105 1 2845 2845 0 0 1 27070 8347 16968 16977 31490 31490 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_2 6 554.1757202148438 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 118.31 1 121.98 121.48 122.48 3.6627 0 0 0 0.53105 1 28366 28366 0 0 1 27071 8347 16968 16977 31491 31491 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.17578125 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 15.393 1 18.932 18.432 19.432 3.5392 0 0 0 0.53105 1 596 596 0 0 1 27072 8347 16968 16977 31492 31492 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.17578125 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 17.447 1 21.011 20.511 21.511 3.5637 0 0 0 0.53105 1 996 996 0 0 1 27073 8347 16968 16977 31493 31493 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.1760864257812 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 17.599 1 21.162 20.662 21.662 3.5637 0 0 0 0.53105 1 1028 1028 0 0 1 27074 8347 16968 16977 31494 31494 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.1751708984375 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 27.728 1 31.484 30.984 31.984 3.7555 0 0 0 0.53105 1 3675 3675 0 0 1 27075 8347 16968 16977 31495 31495 -0.2125643911520001 MECCCACPTF 10 Unmodified _MECCCACPTF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|227|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.17529296875 2 554.175452 1106.33635 NaN NaN NaN NaN NaN NaN NaN 111.08 1 114.75 114.25 115.25 3.6654 0 0 0 0.53105 1 26356 26356 0 0 1 27076 8347 16968 16977 31496 31496 -0.2125643911520001 MECCCCCCEE 10 Unmodified _MECCCCCCEE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN46_class_I_Rep_3 1 578.0391235351562 2 578.124244 1154.23394 NaN NaN NaN NaN NaN NaN NaN 55.055 1 55.055 54.555 55.555 0 0 0 0 0.53105 1 11954 11954 0 0 1 27077 4486 16969 16978 31497 31497 -0.33701216240615395 MECCCCCCEE 10 Unmodified _MECCCCCCEE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 578.0390625 2 578.124244 1154.23394 NaN NaN NaN NaN NaN NaN NaN 49.912 1 53.606 53.106 54.106 3.6946 0 0 0 0.53105 1 10136 10136 0 0 1 27078 4486 16969 16978 31498 31498 -0.33701216240615395 MECCCCCCEE 10 Unmodified _MECCCCCCEE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 578.3741455078125 2 578.124244 1154.23394 NaN NaN NaN NaN NaN NaN NaN 50.367 1 54.062 53.562 54.562 3.6946 0 0 0 0.53105 1 10276 10276 0 0 1 27079 4486 16969 16978 31499 31499 -0.33701216240615395 MECCCCCCEE 10 Unmodified _MECCCCCCEE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS UPN48_class_I_Rep_2 6 578.0394897460938 2 578.124244 1154.23394 NaN NaN NaN NaN NaN NaN NaN 50.508 1 54.202 53.702 54.702 3.6946 0 0 0 0.53105 1 10318 10318 0 0 1 27080 4486 16969 16978 31500 31500 -0.33701216240615395 MECWDSYS 8 Unmodified _MECWDSYS_ 0 0 0 REV__L1PREC2_dup2691|chr5:171402170-171402599:+|1.5933313564365992|0.254159357823853|2.65|151.0|25|2|anti-sense REV__L1PREC2_dup2691|chr5:171402170-171402599:+|1.5933313564365992|0.254159357823853|2.65|151.0|25|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 510.6341552734375 2 510.675511 1019.33647 0.22835 0.00011661 1.2756 0.00065141 1.5039 0.00076802 510.6760490233172 96.741 0.15842 100.35 100.25 100.41 3.6088 18 14 2 0 0 0 0.72333 1 23291 23291 2.3027 0.4585 1 62432 + 27081 29145 16970 16979 31501 31501 -0.17242656527662348 MEDDDMDY 8 Unmodified _MEDDDMDY_ 0 0 0 REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN47_class_I_Rep_3 4 516.7351684570312 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 27.972 1 31.306 30.806 31.806 3.3337 0 0 0 0.40604 1 4322 4322 2.5775 0 1 + 27082 18596 16971 16980 31502 31502 -0.20963274352425287 MEDDDMDY 8 Unmodified _MEDDDMDY_ 0 0 0 REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN47_class_I_Rep_3 4 516.7971801757812 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 27.977 1 31.311 30.811 31.811 3.3337 0 0 0 0.40604 1 4324 4324 2.5775 0 1 + 27083 18596 16971 16980 31503 31503 -0.20963274352425287 MEDDDMDY 8 Unmodified _MEDDDMDY_ 0 0 0 REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN47_class_I_Rep_3 4 516.7982788085938 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 33.767 1 37.042 36.542 37.542 3.2748 0 0 0 0.40604 1 6060 6060 2.5775 0 1 + 27084 18596 16971 16980 31504 31504 -0.20963274352425287 MEDDDMDY 8 Unmodified _MEDDDMDY_ 0 0 0 REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN47_class_I_Rep_3 4 516.7210083007812 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 116.51 1 119.97 119.47 120.47 3.462 0 0 0 0.40604 1 28674 28674 2.5775 0 1 + 27085 18596 16971 16980 31505 31505 -0.20963274352425287 MEDDEEDDSDG 11 Unmodified _MEDDEEDDSDG_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MSMS UPN48_class_I_Rep_3 7 628.692626953125 2 628.690794 1255.36704 NaN NaN NaN NaN NaN NaN NaN 27.595 1 31.35 30.85 31.85 3.7555 0 0 0 0.38417 1 3642 3642 0.30703 0.03801 1 + 27086 20134 16972 16981 31506 31506 -0.25043296190256115 MEDEPQLL 8 Unmodified _MEDEPQLL_ 0 0 0 ENST00000485028.5_1_1:157670476-157670530:-|nuORF;ENST00000496769.1_1_1:157670257-157670530:-|nuORF ENST00000485028.5_1_1:157670476-157670530:-|nuORF ENST00000485028.5_1_1:157670476-157670530:-|nuORF MSMS UPN47_class_I_Rep_1 2 487.7287902832031 2 487.7286 973.442648 NaN NaN NaN NaN NaN NaN NaN 87.286 1 90.923 90.423 91.423 3.6372 0 0 0 0.40604 1 21808 21808 2.5775 0 1 27087 7027 16973 16982 31507 31507 -0.04513577690681814 MEDIKILI 8 Unmodified _MEDIKILI_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS UPN47_class_I_Rep_1 2 487.7818908691406 2 487.783179 973.551804 0.18744 9.1431E-05 -0.090145 -4.3971E-05 0.097297 4.746E-05 487.78299349156316 81.76 0.57687 85.272 85.051 85.628 3.5122 100 64 2 0 0 0 0.82752 1 20437 20437 20.454 2.3186 1 143370 27088 1526 16974 16983 31508 31508 0.06397052999443531 MEDIKILI 8 Unmodified _MEDIKILI_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS UPN47_class_I_Rep_1 2 487.7834167480469 2 487.783179 973.551804 0.21074 0.0001028 0.041674 2.0328E-05 0.25241 0.00012312 487.7830150654102 85.677 0.15239 89.268 89.173 89.326 3.5914 24 19 2 0 0 0 0.82752 1 21397 21397 14.838 3.7238 1 51771 27089 1526 16974 16983 31509 31509 0.06397052999443531 MEDIKILI 8 Unmodified _MEDIKILI_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MATCH UPN47_class_I_Rep_3 4 2 487.783179 973.551804 0.20904 0.00010197 -0.31478 -0.00015355 -0.10574 -5.1579E-05 487.78242839178637 86.009 0.058029 89.381 89.357 89.415 3.3716 0.056443 -0.00026574 NaN 14.838 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 38938 27090 1526 16974 16983 0.06397052999443531 MEDIVLRV 8 Unmodified _MEDIVLRV_ 0 0 0 REV__ENST00000467670.1_1_1:84415538-84417603:-|nuORF REV__ENST00000467670.1_1_1:84415538-84417603:-|nuORF MSMS UPN46_class_I_Rep_3 1 487.77130126953125 2 487.770603 973.526652 NaN NaN NaN NaN NaN NaN NaN 17.468 1 17.468 16.968 17.968 0 0 0 0 0.40625 1 1382 1382 2.3027 0 1 + 27091 19254 16975 16984 31510 31510 0.03882998196866083 MEDKEKPV 8 Unmodified _MEDKEKPV_ 0 0 0 REV__nc|ENSG00000004487|O60341|KDM1A REV__nc|ENSG00000004487|O60341|KDM1A MSMS UPN47_class_I_Rep_2 3 488.2424621582031 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 26.929 1 30.427 29.927 30.927 3.4986 0 0 0 0.40364 1 3967 3967 5.7604 0 1 + 27092 17519 16976 16985 31511 31511 -0.013975849367398041 MEDKEKPV 8 Unmodified _MEDKEKPV_ 0 0 0 REV__nc|ENSG00000004487|O60341|KDM1A REV__nc|ENSG00000004487|O60341|KDM1A MSMS UPN48_class_I_Rep_2 6 488.2421569824219 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 44.577 1 48.339 47.839 48.839 3.7617 0 0 0 0.40404 1 8511 8511 5.2307 0 1 + 27093 17519 16976 16985 31512 31512 -0.013975849367398041 MEDKEKPV 8 Unmodified _MEDKEKPV_ 0 0 0 REV__nc|ENSG00000004487|O60341|KDM1A REV__nc|ENSG00000004487|O60341|KDM1A MSMS UPN48_class_I_Rep_3 7 488.2431640625 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 44.509 1 48.146 47.646 48.646 3.6372 0 0 0 0.40364 1 8415 8415 5.7604 0 1 + 27094 17519 16976 16985 31513 31513 -0.013975849367398041 MEDKKAVR 8 Unmodified _MEDKKAVR_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|179|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|179|3|sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|179|3|sense MSMS UPN47_class_I_Rep_1 2 488.7629699707031 2 488.765852 975.51715 NaN NaN NaN NaN NaN NaN NaN 20.996 1 24.64 24.14 25.14 3.6436 0 0 0 0.40604 1 2207 2207 2.5775 0 1 27095 10392 16977 16986 31514 31514 0.02841229911348364 MEDLKRQL 8 Unmodified _MEDLKRQL_ 0 0 0 ENSG00000197616|ENST00000405093|MYH6 ENSG00000197616|ENST00000405093|MYH6 ENSG00000197616|ENST00000405093|MYH6 MULTI-MSMS UPN47_class_I_Rep_2 3 516.7769775390625 2 516.778959 1031.54336 -0.31761 -0.00016414 -3.4411 -0.0017783 -3.7587 -0.0019424 516.7774871060354 41.463 0.11117 44.828 44.762 44.873 3.3655 9 7 2 0 0 0 0.82752 1 8356 8356 2.5775 0 1 36159 27096 5379 16978 16987 31515 31515 0.02885499082822207 MEDLKRQL 8 Unmodified _MEDLKRQL_ 0 0 0 ENSG00000197616|ENST00000405093|MYH6 ENSG00000197616|ENST00000405093|MYH6 ENSG00000197616|ENST00000405093|MYH6 MSMS UPN47_class_I_Rep_2 3 516.79638671875 2 516.778959 1031.54336 NaN NaN NaN NaN NaN NaN NaN 21.206 1 24.614 24.114 25.114 3.4074 0 0 0 0.40604 1 2332 2332 2.5775 0 1 27097 5379 16978 16987 31516 31516 0.02885499082822207 MEDLPSKGV 9 Unmodified _MEDLPSKGV_ 0 0 0 nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL;ENST00000462893.1_1_1:224477164-224482036:-|nuORF nc|ENSG00000143748|O15381-3|NVL nc|ENSG00000143748|O15381-3|NVL MSMS UPN47_class_I_Rep_2 3 488.2431945800781 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 118.93 1 122.41 121.91 122.91 3.4793 0 0 0 0.38639 1 29118 29118 3.9444 1.3669 1 27098 3322 16979 16988 31517 31517 -0.013975849367398041 MEDNEVFHQQ 10 Unmodified _MEDNEVFHQQ_ 0 0 0 REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 426.1801452636719 3 426.180277 1275.519 -0.46659 -0.00019885 0.10973 4.6766E-05 -0.35686 -0.00015209 426.1802303021919 24.495 0.5732 28.225 27.855 28.428 3.7298 59 45 2 0 0 0 0.56486 2 3145 3145;3201 0.13989 0 1 74992 + 27099 22392 16980 16989 31518;31519 31518 -0.10773805861367691 MEDNEVFHQQ 10 Unmodified _MEDNEVFHQQ_ 0 0 0 REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 426.180277 1275.519 -0.88838 -0.00037861 0.50368 0.00021466 -0.3847 -0.00016395 426.18038936528706 24.569 0.76081 28.037 27.76 28.521 3.4673 -0.094133 0.00025109 NaN 0.13989 109 66 2 NaN NaN NaN NaN 0 NaN NaN 0 76763 + 27100 22392 16980 16989 -0.10773805861367691 MEEALFQHF 9 Oxidation (M) _M(Oxidation (M))EEALFQHF_ M(1)EEALFQHF M(83)EEALFQHF 0 0 1 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS UPN46_class_I_Rep_3 1 584.2606811523438 2 584.260599 1166.50665 0.45201 0.00026409 0.2053 0.00011995 0.6573 0.00038404 584.7623636804453 61.183 0.42892 61.183 60.967 61.396 0 73 51 2 0 0 0 0.0060693 2 13601 13601;13617 82.529 62.076 1 275920 27101 2936 16981 16990 31520;31521 31520 93 -0.06994797533752717 MEEDDEDDEM 10 Unmodified _MEEDDEDDEM_ 0 0 0 REV__nc|ENSG00000141449|Q9C091-4|GREB1L REV__nc|ENSG00000141449|Q9C091-4|GREB1L MSMS UPN47_class_I_Rep_2 3 629.1896362304688 2 629.192116 1256.36968 NaN NaN NaN NaN NaN NaN NaN 25.017 1 28.5 28 29 3.483 0 0 0 0.53105 1 3411 3411 0.40072 0 1 + 27102 19377 16982 16991 31522 31522 -0.24825164056960602 MEEDDEDDEM 10 Unmodified _MEEDDEDDEM_ 0 0 0 REV__nc|ENSG00000141449|Q9C091-4|GREB1L REV__nc|ENSG00000141449|Q9C091-4|GREB1L MSMS UPN47_class_I_Rep_3 4 628.725830078125 2 629.192116 1256.36968 NaN NaN NaN NaN NaN NaN NaN 116.18 1 119.64 119.14 120.14 3.462 0 0 0 0.53105 1 28584 28584 0.40072 0 1 + 27103 19377 16982 16991 31523 31523 -0.24825164056960602 MEEDDEDDEM 10 Unmodified _MEEDDEDDEM_ 0 0 0 REV__nc|ENSG00000141449|Q9C091-4|GREB1L REV__nc|ENSG00000141449|Q9C091-4|GREB1L MSMS UPN48_class_I_Rep_3 7 629.192138671875 2 629.192116 1256.36968 NaN NaN NaN NaN NaN NaN NaN 118.02 1 121.64 121.14 122.14 3.6124 0 0 0 0.53105 1 28070 28070 0.40072 0 1 + 27104 19377 16982 16991 31524 31524 -0.24825164056960602 MEEFLMWVLV 10 Unmodified _MEEFLMWVLV_ 0 0 0 nc|ENSG00000197520|A6PVY3-2|FAM177B nc|ENSG00000197520|A6PVY3-2|FAM177B nc|ENSG00000197520|A6PVY3-2|FAM177B MSMS UPN48_class_I_Rep_1 5 432.8851318359375 3 432.883744 1295.6294 NaN NaN NaN NaN NaN NaN NaN 100.83 1 104.43 103.93 104.93 3.6084 0 0 0 0.53105 1 24346 24346 0.77653 0.27058 1 27105 16796 16983 16992 31525 31525 -0.0065867712667113665 MEEFVQLFR 9 Unmodified _MEEFVQLFR_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS UPN47_class_I_Rep_2 3 599.8002319335938 2 599.799891 1197.58523 NaN NaN NaN NaN NaN NaN NaN 56.247 1 59.548 59.048 60.048 3.3009 0 0 0 0.38639 1 12861 12861 3.9444 0 1 27106 3242 16984 16993 31526 31526 -0.005659452286636224 MEEHTVWV 8 Unmodified _MEEHTVWV_ 0 0 0 REV__nc|ENSG00000139220|O75334-6|PPFIA2 REV__nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS UPN47_class_I_Rep_1 2 515.7389526367188 2 515.73676 1029.45897 -0.18103 -9.3363E-05 1.3469 0.00069465 1.1659 0.00060128 515.7382632279907 29.976 0.17623 33.721 33.635 33.812 3.7449 17 12 2 0 0 0 0.82752 1 4832 4832 2.5775 0 1 36875 + 27107 19306 16985 16994 31527 31527 -0.05458451733943548 MEESYNIIL 9 Unmodified _MEESYNIIL_ 0 0 0 L1ME2_dup761|chr1:175952927-175953475:+|1.0893746535912394|0.0317852991076298|5.1|151.0|43|3|anti-sense L1ME2_dup761|chr1:175952927-175953475:+|1.0893746535912394|0.0317852991076298|5.1|151.0|43|3|anti-sense L1ME2_dup761|chr1:175952927-175953475:+|1.0893746535912394|0.0317852991076298|5.1|151.0|43|3|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2887573242188 2 556.270632 1110.52671 NaN NaN NaN NaN NaN NaN NaN 59.095 1 62.26 61.76 62.76 3.1658 0 0 0 0.38478 1 13782 13782 4.3292 0.38484 1 27108 12528 16986 16995 31528 31528 -0.02413046593778745 MEFHWNYA 8 Unmodified _MEFHWNYA_ 0 0 0 REV__LTR8B_dup1390|chr17:32161016-32161738:-|1.1074299173853326|0.0169470755541074|6.03|151.0|7|1|sense REV__LTR8B_dup1390|chr17:32161016-32161738:-|1.1074299173853326|0.0169470755541074|6.03|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.2283935546875 2 549.229102 1096.44365 -0.086721 -4.763E-05 0.78547 0.0004314 0.69875 0.00038377 549.2281895992902 14.083 0.30961 17.558 17.474 17.784 3.475 69 37 4 0 0 0 0.82752 1 475 475 2.3027 0 1 44869 + 27109 31040 16987 16996 31529 31529 -0.10071318531117868 MEGFLVYFH 9 Unmodified _MEGFLVYFH_ 0 0 0 REV__L1MB7_dup14048|chr10:87099363-87100479:-|2.013557214343165|0.0883840948795991|4.51|151.0|64|2|anti-sense REV__L1MB7_dup14048|chr10:87099363-87100479:-|2.013557214343165|0.0883840948795991|4.51|151.0|64|2|anti-sense MSMS UPN47_class_I_Rep_2 3 571.771240234375 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 67.472 1 70.735 70.235 71.235 3.2636 0 0 0 0.381 1 16275 16275 5.2307 1.9494 1 + 27110 26140 16988 16997 31530 31530 -0.03845001803119885 MEGFLVYFH 9 Unmodified _MEGFLVYFH_ 0 0 0 REV__L1MB7_dup14048|chr10:87099363-87100479:-|2.013557214343165|0.0883840948795991|4.51|151.0|64|2|anti-sense REV__L1MB7_dup14048|chr10:87099363-87100479:-|2.013557214343165|0.0883840948795991|4.51|151.0|64|2|anti-sense MSMS UPN47_class_I_Rep_3 4 571.7706909179688 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 67.601 1 70.793 70.293 71.293 3.1914 0 0 0 0.39326 1 16377 16377 2.3027 0 1 + 27111 26140 16988 16997 31531 31531 -0.03845001803119885 MEHLHPRYR 9 Unmodified _MEHLHPRYR_ 0 0 0 L1MB4_dup7697|chr17:30976304-30977367:-|2.2171273772082376|0.2080889481043584|3.41|151.0|36|3|sense L1MB4_dup7697|chr17:30976304-30977367:-|2.2171273772082376|0.2080889481043584|3.41|151.0|36|3|sense L1MB4_dup7697|chr17:30976304-30977367:-|2.2171273772082376|0.2080889481043584|3.41|151.0|36|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 412.8716125488281 3 413.545225 1237.61384 -0.48173 -0.00019922 -0.17812 -7.3661E-05 -0.65985 -0.00027288 413.879670856682 16.618 0.047823 16.618 16.581 16.629 0 7 5 2 0 0 0 0.12532 1 1171 1171 0.23584 0 1 15153 27112 10582 16989 16998 31532 31532 0.004542171911225523 MEIISEKKY 9 Unmodified _MEIISEKKY_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS UPN47_class_I_Rep_1 2 570.8014526367188 2 570.8021 1139.58965 -0.044843 -2.5597E-05 0.042323 2.4158E-05 -0.00252 -1.4384E-06 570.8020887212477 39.868 1.105 43.535 43.095 44.2 3.6668 219 82 4 0 0 0 0.49187 1 8013 8013 1.4819 1.4819 1 725150 27113 4982 16990 16999 31533 31533 0.025435191942506208 MEILEWNI 8 Unmodified _MEILEWNI_ 0 0 0 L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|61|3|sense L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|61|3|sense L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|61|3|sense MSMS UPN47_class_I_Rep_3 4 524.2771606445312 2 524.26261 1046.51067 NaN NaN NaN NaN NaN NaN NaN 78.969 1 82.264 81.764 82.764 3.295 0 0 0 0.37214 1 19714 19714 16.942 1.0951 1 27114 11035 16991 17000 31534 31534 -0.010727080400329214 MEKLWRFLKEL 11 Unmodified _MEKLWRFLKEL_ 0 0 0 L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|100|3|sense L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|100|3|sense L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|100|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 497.78607177734375 3 498.283007 1491.82719 -0.16193 -8.0685E-05 -0.32269 -0.00016079 -0.48462 -0.00024148 498.28276044523574 28.961 1.036 32.453 32.004 33.04 3.4923 171 82 3 0 0 0 22.551 1 4694 4694 0.50596 0.50596 1 130200 27115 15080 16992 17001 31535 31535 0.1009508512750017 MEKPIYWY 8 Unmodified _MEKPIYWY_ 0 0 0 REV__L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|85|3|sense REV__L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|85|3|sense MSMS UPN48_class_I_Rep_3 7 564.7935180664062 2 565.272978 1128.5314 NaN NaN NaN NaN NaN NaN NaN 116.18 1 119.82 119.32 120.32 3.6312 0 0 0 0.40738 1 27652 27652 0.79363 0 1 + 27116 29280 16993 17002 31536 31536 -0.027721176603563435 MEKQREKLR 9 Unmodified _MEKQREKLR_ 0 0 0 nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;nc|ENSG00000158528|Q9ULJ8|PPP1R9A nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A MSMS UPN48_class_I_Rep_3 7 406.565673828125 3 406.564285 1216.67103 NaN NaN NaN NaN NaN NaN NaN 33.661 1 37.341 36.841 37.841 3.6797 0 0 0 0.39244 1 5261 5261 2.4985 0.59211 1 27117 3803 16994 17003 31537 31537 0.07135639676857863 MELHQTGKL 9 Unmodified _MELHQTGKL_ 0 0 0 L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|32|3|sense L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|32|3|sense L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 528.7786865234375 2 528.778959 1055.54336 NaN NaN NaN NaN NaN NaN NaN 29.706 1 33.337 32.837 33.837 3.6316 0 0 0 0.39598 1 4255 4255 1.6526 0 1 27118 9309 16995 17004 31538 31538 0.017814990828355803 MELLERYIF 9 Unmodified _MELLERYIF_ 0 0 0 REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|13|2|sense REV__L1ME4b_dup11845|chrX:19763085-19763722:-|1.3179888745002626|0.0070524711489861|7.55|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 405.21368408203125 3 405.21437 1212.62128 NaN NaN NaN NaN NaN NaN NaN 39.694 1 43.423 42.923 43.923 3.7297 0 0 0 0.38478 1 7069 7069 2.4985 1.3051 1 + 27119 28245 16996 17005 31539 31539 0.023475119481872753 MELWPRMR 8 Unmodified _MELWPRMR_ 0 0 0 REV__ENST00000493208.1_1_5:131825047-131826375:-|nuORF REV__ENST00000493208.1_1_5:131825047-131826375:-|nuORF MSMS UPN47_class_I_Rep_2 3 559.7828979492188 2 559.783521 1117.55249 NaN NaN NaN NaN NaN NaN NaN 26.402 1 29.897 29.397 30.397 3.4945 0 0 0 0.40604 1 3814 3814 2.5775 0 1 + 27120 18824 16997 17006 31540 31540 -0.0015843083251638745 MENLFINRF 9 Oxidation (M) _M(Oxidation (M))ENLFINRF_ M(1)ENLFINRF M(42)ENLFINRF 0 0 1 nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5 nc|ENSG00000012779|P09917-5|ALOX5 nc|ENSG00000012779|P09917-5|ALOX5 MSMS UPN46_class_I_Rep_3 1 600.2969970703125 2 600.297516 1198.58048 NaN NaN NaN NaN NaN NaN NaN 65.604 1 65.604 65.104 66.104 0 0 0 0 0.035625 1 14837 14837 42.312 19.164 1 27121 782 16998 17007 31541 31541 9 -0.010868293714338506 MENLFINRF 9 Oxidation (M) _M(Oxidation (M))ENLFINRF_ M(1)ENLFINRF M(42)ENLFINRF 0 0 1 nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5 nc|ENSG00000012779|P09917-5|ALOX5 nc|ENSG00000012779|P09917-5|ALOX5 MSMS UPN46_class_I_Rep_3 1 600.2991333007812 2 600.297516 1198.58048 NaN NaN NaN NaN NaN NaN NaN 65.648 1 65.648 65.148 66.148 0 0 0 0 0.035625 1 14849 14849 42.312 19.164 1 27122 782 16998 17007 31542 31542 9 -0.010868293714338506 MEPQEERETQ 10 Unmodified _MEPQEERETQ_ 0 0 0 ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1 ENST00000591098.1_1_18:43684359-43698283:+|nuORF ENST00000591098.1_1_18:43684359-43698283:+|nuORF MSMS UPN47_class_I_Rep_2 3 638.7779541015625 2 638.777341 1275.54013 NaN NaN NaN NaN NaN NaN NaN 35.642 1 39.053 38.553 39.553 3.4114 0 0 0 0.53105 1 6595 6595 2.9952 1.3426 1 27123 3617 16999 17008 31543 31543 -0.08661840552508693 MEPSQLPLLT 10 Unmodified _MEPSQLPLLT_ 0 0 0 L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|19|2|sense L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|19|2|sense L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 564.8040771484375 2 564.8021 1127.58965 NaN NaN NaN NaN NaN NaN NaN 22.012 1 25.727 25.227 26.227 3.7144 0 0 0 0.53105 1 2177 2177 1.4819 0.79152 1 27124 8785 17000 17009 31544 31544 0.030955191942666715 MERRDPRV 8 Unmodified _MERRDPRV_ 0 0 0 REV__ENST00000465521.1_1_2:74757592-74758334:+|nuORF REV__ENST00000465521.1_1_2:74757592-74758334:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 529.3345336914062 2 529.779825 1057.5451 0.33933 0.00017977 -0.82701 -0.00043814 -0.48768 -0.00025836 529.779408165437 52.953 0.70517 56.472 56.089 56.795 3.5192 88 50 2 0 0 0 0.72333 1 11145 11145 5.2307 5.2307 1 168860 + 27125 22468 17001 17010 31545 31545 0.01862552891429914 MESNYVWYF 9 Unmodified _MESNYVWYF_ 0 0 0 REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|48|2|anti-sense REV__L1MEd_dup16068|chr12:45963018-45963786:+|1.5208230256978457|0.108954432217921|3.8|150.0|48|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 619.76171875 2 619.762975 1237.5114 0.097319 6.0315E-05 1.2728 0.00078882 1.3701 0.00084913 619.7635186955192 43.451 0.58321 47.139 46.834 47.417 3.6875 49 31 2 0 0 0 0.48414 1 8882 8882 2.3027 0 1 81529 + 27126 28542 17002 17011 31546 31546 -0.09785913390987844 METEQPAPEGL 11 Unmodified _METEQPAPEGL_ 0 0 0 L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|100|2|sense;L1PA4_dup10810|chr16:31307020-31310933:-|1.3311853112010732|0.0564117061676157|4.56|151.0|23|1|sense L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|100|2|sense L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|100|2|sense MSMS UPN48_class_I_Rep_2 6 601.2755126953125 2 601.273903 1200.53325 NaN NaN NaN NaN NaN NaN NaN 68.978 1 72.5 72 73 3.5216 0 0 0 0.38417 1 15947 15947 2.7352 0.23671 1 27127 14303 17003 17012 31547 31547 -0.05899153433074389 MEVLLVFM 8 Unmodified _MEVLLVFM_ 0 0 0 REV__AluSq2_dup9527|chr2:233073358-233073666:+|1.6018182733609276|0.0136492514005818|6.87|151.0|14|2|anti-sense REV__AluSq2_dup9527|chr2:233073358-233073666:+|1.6018182733609276|0.0136492514005818|6.87|151.0|14|2|anti-sense MSMS UPN47_class_I_Rep_2 3 491.2611389160156 2 491.261025 980.507497 NaN NaN NaN NaN NaN NaN NaN 58.239 1 61.521 61.021 62.021 3.2818 0 0 0 0.39819 1 13467 13467 8.5933 2.8329 1 + 27128 17126 17004 17013 31548 31548 0.016463255816233868 MEWVCDGDH 9 Unmodified _MEWVCDGDH_ 0 0 0 nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN nc|ENSG00000145244|Q9Y5Q5-2|CORIN nc|ENSG00000145244|Q9Y5Q5-2|CORIN MSMS UPN47_class_I_Rep_2 3 546.2786865234375 2 546.199684 1090.38482 NaN NaN NaN NaN NaN NaN NaN 24.884 1 28.367 27.867 28.867 3.483 0 0 0 0.4007 1 3371 3371 0.52476 0.52476 1 27129 3389 17005 17014 31549 31549 -0.15676162887757528 MEYYPLQLV 9 Unmodified _MEYYPLQLV_ 0 0 0 REV__ENSG00000185272|ENST00000400577|RBM11 REV__ENSG00000185272|ENST00000400577|RBM11 MSMS UPN47_class_I_Rep_2 3 578.27734375 2 578.291368 1154.56818 NaN NaN NaN NaN NaN NaN NaN 20.865 1 24.273 23.773 24.773 3.4074 0 0 0 0.39428 1 2240 2240 2.0598 0 1 + 27130 20851 17006 17015 31550 31550 -0.002918658344697178 MFAWHIYY 8 Unmodified _MFAWHIYY_ 0 0 0 L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|60|1|anti-sense L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|60|1|anti-sense L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 565.7615966796875 2 565.760038 1129.50552 NaN NaN NaN NaN NaN NaN NaN 70.657 1 74.028 73.528 74.528 3.3713 0 0 0 0.39167 1 17182 17182 11.114 0 1 27131 11379 17007 17016 31551 31551 -0.0540496711198557 MFCCVLFLF 9 Unmodified _MFCCVLFLF_ 0 0 0 REV__L1MEc_dup9743|chr9:5151407-5152746:+|2.4610899078482427|0.012920724739569|7.57|151.0|85|3|anti-sense REV__L1MEc_dup9743|chr9:5151407-5152746:+|2.4610899078482427|0.012920724739569|7.57|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 561.7620849609375 2 561.762877 1121.5112 NaN NaN NaN NaN NaN NaN NaN 71.287 1 74.662 74.162 75.162 3.3751 0 0 0 0.39326 1 17371 17371 2.3027 1.5091 1 + 27132 28497 17008 17017 31552 31552 -0.04469327916194743 MFCIRLSRC 9 Unmodified _MFCIRLSRC_ 0 0 0 REV__L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|116|1|anti-sense REV__L1PA15_dup3466|chr7:43702579-43706082:-|3.657629582439886|0.070366799118114|5.7|151.0|116|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.775146484375 2 564.777382 1127.54021 NaN NaN NaN NaN NaN NaN NaN 27.434 1 31.19 30.69 31.69 3.7555 0 0 0 0.39518 1 3600 3600 1.8442 0.19162 1 + 27133 28830 17009 17018 31553 31553 -0.01845790567176664 MFCKLNVVY 9 Unmodified _MFCKLNVVY_ 0 0 0 Tigger2a_dup2950|chr17:31276841-31277270:-|1.40454893898398|0.0081742487677078|7.42|150.0|19|1|anti-sense Tigger2a_dup2950|chr17:31276841-31277270:-|1.40454893898398|0.0081742487677078|7.42|150.0|19|1|anti-sense Tigger2a_dup2950|chr17:31276841-31277270:-|1.40454893898398|0.0081742487677078|7.42|150.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 558.7836303710938 2 558.782656 1115.55076 NaN NaN NaN NaN NaN NaN NaN 84.232 1 87.96 87.46 88.46 3.7281 0 0 0 0.38478 1 19989 19989 4.3292 1.334 1 27134 33337 17010 17019 31554 31554 -0.00239484641110721 MFCSMDINTT 10 Unmodified _MFCSMDINTT_ 0 0 0 REV__L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|87|3|anti-sense REV__L1MEc_dup18342|chr22:49556497-49557824:-|1.5037737955285686|0.0322836005925233|5.54|148.0|87|3|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7460327148438 2 581.732503 1161.45045 NaN NaN NaN NaN NaN NaN NaN 113.64 1 117.14 116.64 117.64 3.4963 0 0 0 0.53105 1 27883 27883 1.6526 0.96225 1 + 27135 28424 17011 17020 31555 31555 -0.12381509757074127 MFCSTEAE 8 Unmodified _MFCSTEAE_ 0 0 0 L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|190|1|anti-sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|190|1|anti-sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|190|1|anti-sense MSMS UPN48_class_I_Rep_3 7 458.787841796875 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 84.87 1 88.619 88.119 89.119 3.7494 0 0 0 0.40738 1 20135 20135 0.79363 0 1 27136 9281 17012 17021 31556 31556 -0.1308575503933298 MFFFFFGL 8 Unmodified _MFFFFFGL_ 0 0 0 REV__MER4E1_dup852|chr15:94237426-94238205:+|1.762149981140697|0.0602980886367027|4.87|151.0|1|1|sense REV__MER4E1_dup852|chr15:94237426-94238205:+|1.762149981140697|0.0602980886367027|4.87|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 528.25732421875 2 528.2566 1054.49865 NaN NaN NaN NaN NaN NaN NaN 17.846 1 17.846 17.346 18.346 0 0 0 0 0.40738 1 1470 1470 0.79363 0 1 + 27137 31368 17013 17022 31557 31557 -0.02642279992528529 MFFFHERL 8 Unmodified _MFFFHERL_ 0 0 0 L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|82|1|anti-sense L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|82|1|anti-sense L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_3 4 564.2398071289062 2 563.778762 1125.54297 NaN NaN NaN NaN NaN NaN NaN 21.505 1 24.854 24.354 25.354 3.3496 0 0 0 0.40738 1 2416 2416 0.79363 0 1 27138 8851 17014 17023 31558 31558 -0.014778758463762642 MFFFKNFF 8 Unmodified _MFFFKNFF_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2747802734375 2 564.272781 1126.53101 NaN NaN NaN NaN NaN NaN NaN 22.709 1 26.269 25.769 26.769 3.5605 0 0 0 0.40738 1 2254 2254 0.79363 0 1 27139 10394 17015 17024 31559 31559 -0.02719492589562833 MFFFKNFF 8 Unmodified _MFFFKNFF_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2734375 2 564.272781 1126.53101 NaN NaN NaN NaN NaN NaN NaN 28.393 1 32.024 31.524 32.524 3.6311 0 0 0 0.40738 1 3902 3902 0.79363 0 1 27140 10394 17015 17024 31560 31560 -0.02719492589562833 MFFFKNFF 8 Unmodified _MFFFKNFF_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|396|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2736206054688 2 564.272781 1126.53101 NaN NaN NaN NaN NaN NaN NaN 114.54 1 118.19 117.69 118.69 3.6511 0 0 0 0.40738 1 27237 27237 0.79363 0.10326 1 27141 10394 17015 17024 31561 31561 -0.02719492589562833 MFFFRNKH 8 Unmodified _MFFFRNKH_ 0 0 0 ENSG00000141759|ENST00000269601|TXNL4A ENSG00000141759|ENST00000269601|TXNL4A ENSG00000141759|ENST00000269601|TXNL4A MSMS UPN47_class_I_Rep_3 4 563.7864990234375 2 563.784379 1125.5542 NaN NaN NaN NaN NaN NaN NaN 44.282 1 47.526 47.026 48.026 3.2441 0 0 0 0.40604 1 9271 9271 2.5775 0.27475 1 27142 3232 17016 17025 31562 31562 -0.003550537522187369 MFFKFQKI 8 Unmodified _MFFKFQKI_ 0 0 0 L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|19|2|sense L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|19|2|sense L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 544.802490234375 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 19.74 1 23.278 22.778 23.778 3.5378 0 0 0 0.40746 1 1548 1548 0.69038 0 1 27143 9147 17017 17026 31563 31563 0.048567693358791075 MFFLFFWRD 9 Unmodified _MFFLFFWRD_ 0 0 0 AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.8792419433594 3 436.879322 1307.61614 -0.048321 -2.111E-05 1.6673 0.00072841 1.619 0.0007073 437.2147726713899 98.229 0.22267 101.84 101.73 101.95 3.6065 39 26 2 0 0 0 0.49573 1 23695 23695 1.0715 0.10919 1 154130 27144 336 17018 17027 31564 31564 -0.02536747123758687 MFFLFFWRD 9 Unmodified _MFFLFFWRD_ 0 0 0 AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.879322 1307.61614 -0.32389 -0.0001415 1.8772 0.00082011 1.5533 0.0006786 436.8793792781617 98.419 0.24597 101.85 101.74 101.99 3.4328 -0.074393 0.00056444 NaN 1.0715 49 33 2 NaN NaN NaN NaN 0 NaN NaN 0 49167 27145 336 17018 17027 -0.02536747123758687 MFFLFFWRD 9 Unmodified _MFFLFFWRD_ 0 0 0 AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense AluSx3_dup9264|chr5:69922419-69922686:+|1.1926858031967895|0.2507299780802517|2.25|150.0|15|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.879322 1307.61614 0.14036 6.132E-05 0.97627 0.00042651 1.1166 0.00048783 436.8791421276257 97.944 0.19597 101.85 101.75 101.95 3.9022 -0.079925 -0.00061634 NaN 1.0715 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 80529 27146 336 17018 17027 -0.02536747123758687 MFFLWVRL 8 Unmodified _MFFLWVRL_ 0 0 0 REV__LTR41_dup44|chr1:41137587-41137984:+|1.0151658880547338|0.0195630367292184|5.7|151.0|2|1|sense REV__LTR41_dup44|chr1:41137587-41137984:+|1.0151658880547338|0.0195630367292184|5.7|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 556.3114624023438 2 556.309698 1110.60484 NaN NaN NaN NaN NaN NaN NaN 88.482 1 92.293 91.793 92.793 3.8104 0 0 0 0.40738 1 21001 21001 0.79363 0 1 + 27147 30922 17019 17028 31565 31565 0.053964755727747615 MFFRFLIG 8 Unmodified _MFFRFLIG_ 0 0 0 L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|212|3|anti-sense L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|212|3|anti-sense L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|212|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 515.3058471679688 2 515.780773 1029.54699 -0.23971 -0.00012364 0.26935 0.00013892 0.029634 1.5285E-05 515.7832653090368 14.055 0.087049 17.528 17.456 17.543 3.4731 10 9 2 0 0 0 0.72333 1 480 480 0.79363 0 1 14134 27148 13735 17020 17029 31566 31566 0.033402136473569044 MFFWEYQR 8 Unmodified _MFFWEYQR_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MSMS UPN47_class_I_Rep_1 2 603.7713012695312 2 603.773677 1205.5328 NaN NaN NaN NaN NaN NaN NaN 48.302 1 51.984 51.484 52.484 3.6819 0 0 0 0.40625 1 10408 10408 2.3027 0.24298 1 + 27149 20569 17021 17030 31567 31567 -0.061744835716126545 MFGFFVVVL 9 Unmodified _MFGFFVVVL_ 0 0 0 L1MEc_dup12863|chr11:72882713-72883650:+|2.4988718959960146|0.009284620083204|8.07|151.0|69|3|anti-sense L1MEc_dup12863|chr11:72882713-72883650:+|2.4988718959960146|0.009284620083204|8.07|151.0|69|3|anti-sense L1MEc_dup12863|chr11:72882713-72883650:+|2.4988718959960146|0.009284620083204|8.07|151.0|69|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7918701171875 2 529.790807 1057.56706 NaN NaN NaN NaN NaN NaN NaN 63.669 1 67.025 66.525 67.525 3.3557 0 0 0 0.381 1 15079 15079 5.2307 0.90143 1 27150 13014 17022 17031 31568 31568 0.040579645873094705 MFHHEERT 8 Unmodified _MFHHEERT_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS UPN46_class_I_Rep_3 1 543.7435302734375 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 111.86 1 111.86 111.36 112.36 0 0 0 0 0.40738 1 27597 27597 0.79363 0 1 + 27151 19598 17023 17032 31569 31569 -0.06805415270878257 MFHHEERT 8 Unmodified _MFHHEERT_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS UPN47_class_I_Rep_2 3 543.7603149414062 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 21.114 1 24.522 24.022 25.022 3.4074 0 0 0 0.40738 1 2306 2306 0.79363 0 1 + 27152 19598 17023 17032 31570 31570 -0.06805415270878257 MFHHEERT 8 Unmodified _MFHHEERT_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS UPN47_class_I_Rep_2 3 543.7432861328125 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 112.08 1 115.61 115.11 116.11 3.5226 0 0 0 0.40738 1 27302 27302 0.79363 0 1 + 27153 19598 17023 17032 31571 31571 -0.06805415270878257 MFHHEERT 8 Unmodified _MFHHEERT_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS UPN48_class_I_Rep_1 5 543.7430419921875 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 114.3 1 117.93 117.43 118.43 3.6301 0 0 0 0.40625 1 27787 27787 2.3027 0 1 + 27154 19598 17023 17032 31572 31572 -0.06805415270878257 MFHHEERT 8 Unmodified _MFHHEERT_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS UPN48_class_I_Rep_2 6 543.744384765625 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 112.38 1 116.05 115.55 116.55 3.6648 0 0 0 0.40738 1 26773 26773 0.79363 0 1 + 27155 19598 17023 17032 31573 31573 -0.06805415270878257 MFHHEERT 8 Unmodified _MFHHEERT_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS UPN48_class_I_Rep_3 7 543.7424926757812 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 22.533 1 26.284 25.784 26.784 3.7507 0 0 0 0.40738 1 2314 2314 0.79363 0 1 + 27156 19598 17023 17032 31574 31574 -0.06805415270878257 MFHLHVFY 8 Unmodified _MFHLHVFY_ 0 0 0 ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|114|1|anti-sense ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|114|1|anti-sense ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|114|1|anti-sense MSMS UPN47_class_I_Rep_2 3 547.2701416015625 2 547.26803 1092.52151 NaN NaN NaN NaN NaN NaN NaN 45.105 1 48.46 47.96 48.96 3.3556 0 0 0 0.40581 1 9472 9472 2.8892 0 1 27157 7761 17024 17033 31575 31575 -0.021052608750778745 MFIARNHKP 9 Unmodified _MFIARNHKP_ 0 0 0 REV__L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|25|2|sense REV__L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 557.2008056640625 2 557.302936 1112.59132 NaN NaN NaN NaN NaN NaN NaN 62.766 1 62.766 62.266 63.266 0 0 0 0 0.39428 1 14053 14053 2.0598 0.73022 1 + 27158 25693 17025 17034 31576 31576 0.03952617793538593 MFIFLRRL 8 Unmodified _MFIFLRRL_ 0 0 0 ENST00000602526.1_1_9:108337365-108363292:+|nuORF ENST00000602526.1_1_9:108337365-108363292:+|nuORF ENST00000602526.1_1_9:108337365-108363292:+|nuORF MSMS UPN48_class_I_Rep_2 6 548.3284301757812 2 548.328422 1094.64229 NaN NaN NaN NaN NaN NaN NaN 111.22 1 114.89 114.39 115.39 3.6666 0 0 0 0.40738 1 26457 26457 0.79363 0 1 27159 7667 17026 17035 31577 31577 0.09875566838377381 MFIHKHIK 8 Unmodified _MFIHKHIK_ 0 0 0 REV__L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|139|3|anti-sense REV__L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|139|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.3057861328125 2 527.304947 1052.59534 0.40485 0.00021348 0.49932 0.00026329 0.90417 0.00047677 527.3051023839442 89.954 0.74422 93.701 93.326 94.07 3.7471 159 101 2 0 0 0 0.82752 1 21380 21380 2.3027 0 1 413970 + 27160 26514 17027 17036 31578 31578 0.0711470728722361 MFIIFIAH 8 Unmodified _MFIIFIAH_ 0 0 0 L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|94|2|anti-sense L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|94|2|anti-sense L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|94|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 496.7661437988281 2 496.275324 990.536095 0.19811 9.832E-05 1.6342 0.00081102 1.8323 0.00090934 496.2762111069304 55.523 0.11101 58.701 58.623 58.734 3.1779 8 5 2 0 0 0 0.72333 1 12673 12673 2.8892 0.58649 1 38882 27161 12868 17028 17037 31579 31579 0.04044811273047344 MFILFARR 8 Unmodified _MFILFARR_ 0 0 0 REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.305419921875 2 527.304947 1052.59534 0.33323 0.00017571 0.30314 0.00015985 0.63637 0.00033556 527.3050196078248 93.948 0.24003 93.948 93.84 94.08 0 29 24 2 0 0 0 0.82752 1 22804 22804 0.79363 0 1 1006800 + 27162 30128 17029 17038 31580 31580 0.07114707287246347 MFILFARR 8 Unmodified _MFILFARR_ 0 0 0 REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.3060913085938 2 527.304947 1052.59534 0.42421 0.00022369 0.36463 0.00019227 0.78884 0.00041596 527.305102356276 90.277 0.54247 93.967 93.637 94.179 3.6899 100 71 2 0 0 0 0.82752 1 22523 22523 0.79363 0 1 92668 + 27163 30128 17029 17038 31581 31581 0.07114707287246347 MFILFARR 8 Unmodified _MFILFARR_ 0 0 0 REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.3051147460938 2 527.304947 1052.59534 0.29989 0.00015813 0.39073 0.00020603 0.69062 0.00036417 527.3051114086568 90.247 0.54369 93.704 93.483 94.027 3.4571 115 76 2 0 0 0 0.82752 1 22430 22430 0.79363 0 1 141980 + 27164 30128 17029 17038 31582 31582 0.07114707287246347 MFILFARR 8 Unmodified _MFILFARR_ 0 0 0 REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.3053588867188 2 527.304947 1052.59534 0.41337 0.00021797 0.23741 0.00012519 0.65078 0.00034316 527.3050263039181 90.383 0.51979 93.78 93.481 94 3.3976 96 68 2 0 0 0 0.82752 1 22602 22602 0.79363 0 1 135940 + 27165 30128 17029 17038 31583 31583 0.07114707287246347 MFILFARR 8 Unmodified _MFILFARR_ 0 0 0 REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense REV__L1PA7_dup544|chr1:169407627-169414027:+|1.334742549993065|0.195957597915615|2.77|151.0|384|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.3049926757812 2 527.304947 1052.59534 0.40485 0.00021348 0.49932 0.00026329 0.90417 0.00047677 527.3051023839442 89.954 0.74422 93.701 93.326 94.07 3.7471 159 101 2 0 0 0 0.82752 1 21496 21496 0.79363 0 1 413970 + 27166 30128 17029 17038 31584 31584 0.07114707287246347 MFIVRKTQ 8 Unmodified _MFIVRKTQ_ 0 0 0 L1M5_dup37555|chr11:76118021-76119042:-|2.430976709570432|0.0458915678693387|5.73|151.0|38|3|sense L1M5_dup37555|chr11:76118021-76119042:-|2.430976709570432|0.0458915678693387|5.73|151.0|38|3|sense L1M5_dup37555|chr11:76118021-76119042:-|2.430976709570432|0.0458915678693387|5.73|151.0|38|3|sense MSMS UPN48_class_I_Rep_1 5 511.7939147949219 2 511.794412 1021.57427 NaN NaN NaN NaN NaN NaN NaN 33.093 1 36.62 36.12 37.12 3.5266 0 0 0 0.40738 1 5117 5117 0.79363 0.10326 1 27167 9153 17030 17039 31585 31585 0.06434697187728489 MFKIKYKLYLP 11 Unmodified _MFKIKYKLYLP_ 0 0 0 ENST00000379509.7_1_2:30865446-30865677:+|nuORF ENST00000379509.7_1_2:30865446-30865677:+|nuORF ENST00000379509.7_1_2:30865446-30865677:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 481.2834167480469 3 481.952598 1442.83597 0.12165 5.8629E-05 0.15132 7.2928E-05 0.27297 0.00013156 481.95247008028144 94.879 0.19196 98.496 98.349 98.541 3.6167 39 23 2 0 0 0 22.551 1 22827 22827 0.08335 0 1 109370 27168 6477 17031 17040 31586 31586 0.132260587639621 MFKYYFFM 8 Unmodified _MFKYYFFM_ 0 0 0 LTR10C_dup86|chr2:241329520-241330095:-|3.291631474049564|0.3521760033882916|3.22|151.0|16|2|sense LTR10C_dup86|chr2:241329520-241330095:-|3.291631474049564|0.3521760033882916|3.22|151.0|16|2|sense LTR10C_dup86|chr2:241329520-241330095:-|3.291631474049564|0.3521760033882916|3.22|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 588.7664794921875 2 588.766474 1175.5184 NaN NaN NaN NaN NaN NaN NaN 21.518 1 24.942 24.442 25.442 3.4241 0 0 0 0.40604 1 2416 2416 2.5775 0 1 27169 15516 17032 17041 31587 31587 -0.06234272044116551 MFLDDSFR 8 Unmodified _MFLDDSFR_ 0 0 0 nc|ENSG00000126091|Q11203-17|ST3GAL3;nc|ENSG00000126091|Q11203-24|ST3GAL3;ENST00000489897.5_1_1:44323954-44395852:+|nuORF;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|6|intron;nc|ENSG00000126091|Q11203-13|ST3GAL3;nc|ENSG00000126091|Q11203-19|ST3GAL3;nc|ENSG00000126091|Q11203-2|ST3GAL3;ENSG00000126091|ENST00000347631|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|2|intron;nc|ENSG00000126091|Q11203-15|ST3GAL3;nc|ENSG00000126091|Q11203-5|ST3GAL3;nc|ENSG00000126091|Q11203-7|ST3GAL3;nc|ENSG00000126091|Q11203-8|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|1|intron;ENSG00000126091.21,ST3GAL3,chr1,+,I22.1,43899728,43900748|62|6.3|1|intron;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|4|intron;nc|ENSG00000126091|Q11203-16|ST3GAL3;nc|ENSG00000126091|Q11203-21|ST3GAL3;nc|ENSG00000126091|Q11203-20|ST3GAL3;ENST00000461375.1_1_1:44280573-44366462:+|nuORF;nc|ENSG00000126091|Q11203-6|ST3GAL3;nc|ENSG00000126091|Q11203-10|ST3GAL3;nc|ENSG00000126091|Q11203-23|ST3GAL3;nc|ENSG00000126091|Q11203-3|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I22.1,43899728,43900748|62|6.3|3|intron;nc|ENSG00000126091|Q11203-12|ST3GAL3;nc|ENSG00000126091|Q11203-14|ST3GAL3;nc|ENSG00000126091|Q11203-18|ST3GAL3;nc|ENSG00000126091|Q11203-4|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 MULTI-SECPEP UPN47_class_I_Rep_2 3 515.7625122070312 2 515.73676 1029.45897 -0.30839 -0.00015905 1.2794 0.00065982 0.97098 0.00050077 516.2381863093926 25.703 0.050194 29.197 29.165 29.215 3.4945 6 4 2 0 0 0 0.72333 1 3613 3613 2.5775 1.7838 1 32633 27170 7061 17033 17042 31588 31588 -0.05458451733943548 MFLDDSFR 8 Unmodified _MFLDDSFR_ 0 0 0 nc|ENSG00000126091|Q11203-17|ST3GAL3;nc|ENSG00000126091|Q11203-24|ST3GAL3;ENST00000489897.5_1_1:44323954-44395852:+|nuORF;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|6|intron;nc|ENSG00000126091|Q11203-13|ST3GAL3;nc|ENSG00000126091|Q11203-19|ST3GAL3;nc|ENSG00000126091|Q11203-2|ST3GAL3;ENSG00000126091|ENST00000347631|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|2|intron;nc|ENSG00000126091|Q11203-15|ST3GAL3;nc|ENSG00000126091|Q11203-5|ST3GAL3;nc|ENSG00000126091|Q11203-7|ST3GAL3;nc|ENSG00000126091|Q11203-8|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|1|intron;ENSG00000126091.21,ST3GAL3,chr1,+,I22.1,43899728,43900748|62|6.3|1|intron;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|4|intron;nc|ENSG00000126091|Q11203-16|ST3GAL3;nc|ENSG00000126091|Q11203-21|ST3GAL3;nc|ENSG00000126091|Q11203-20|ST3GAL3;ENST00000461375.1_1_1:44280573-44366462:+|nuORF;nc|ENSG00000126091|Q11203-6|ST3GAL3;nc|ENSG00000126091|Q11203-10|ST3GAL3;nc|ENSG00000126091|Q11203-23|ST3GAL3;nc|ENSG00000126091|Q11203-3|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I22.1,43899728,43900748|62|6.3|3|intron;nc|ENSG00000126091|Q11203-12|ST3GAL3;nc|ENSG00000126091|Q11203-14|ST3GAL3;nc|ENSG00000126091|Q11203-18|ST3GAL3;nc|ENSG00000126091|Q11203-4|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 515.73676 1029.45897 0.33785 0.00017424 1.357 0.00069988 1.6949 0.00087412 515.7381095494744 25.963 0.037987 29.529 29.507 29.545 3.5667 0.12457 -0.00041981 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 31480 27171 7061 17033 17042 -0.05458451733943548 MFLDDSFR 8 Unmodified _MFLDDSFR_ 0 0 0 nc|ENSG00000126091|Q11203-17|ST3GAL3;nc|ENSG00000126091|Q11203-24|ST3GAL3;ENST00000489897.5_1_1:44323954-44395852:+|nuORF;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|6|intron;nc|ENSG00000126091|Q11203-13|ST3GAL3;nc|ENSG00000126091|Q11203-19|ST3GAL3;nc|ENSG00000126091|Q11203-2|ST3GAL3;ENSG00000126091|ENST00000347631|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|2|intron;nc|ENSG00000126091|Q11203-15|ST3GAL3;nc|ENSG00000126091|Q11203-5|ST3GAL3;nc|ENSG00000126091|Q11203-7|ST3GAL3;nc|ENSG00000126091|Q11203-8|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|1|intron;ENSG00000126091.21,ST3GAL3,chr1,+,I22.1,43899728,43900748|62|6.3|1|intron;ENSG00000126091.21,ST3GAL3,chr1,+,I28.1,43920941,43921442|32|7.13|4|intron;nc|ENSG00000126091|Q11203-16|ST3GAL3;nc|ENSG00000126091|Q11203-21|ST3GAL3;nc|ENSG00000126091|Q11203-20|ST3GAL3;ENST00000461375.1_1_1:44280573-44366462:+|nuORF;nc|ENSG00000126091|Q11203-6|ST3GAL3;nc|ENSG00000126091|Q11203-10|ST3GAL3;nc|ENSG00000126091|Q11203-23|ST3GAL3;nc|ENSG00000126091|Q11203-3|ST3GAL3;ENSG00000126091.21,ST3GAL3,chr1,+,I22.1,43899728,43900748|62|6.3|3|intron;nc|ENSG00000126091|Q11203-12|ST3GAL3;nc|ENSG00000126091|Q11203-14|ST3GAL3;nc|ENSG00000126091|Q11203-18|ST3GAL3;nc|ENSG00000126091|Q11203-4|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 515.73676 1029.45897 0.23161 0.00011945 2.4962 0.0012874 2.7278 0.0014068 515.7376194539389 25.719 0.034636 29.488 29.465 29.5 3.769 0.082993 0.00075519 NaN 2.5775 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 26071 27172 7061 17033 17042 -0.05458451733943548 MFLIRLLIILL 11 Unmodified _MFLIRLLIILL_ 0 0 0 REV__L1MB3_dup2968|chr3:33523104-33524360:+|1.367505614363834|0.0453456778897469|4.91|150.0|69|2|anti-sense REV__L1MB3_dup2968|chr3:33523104-33524360:+|1.367505614363834|0.0453456778897469|4.91|150.0|69|2|anti-sense MSMS UPN48_class_I_Rep_2 6 453.3052673339844 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.69 117.19 118.19 3.663 0 0 0 0.38417 1 27235 27235 0.094841 0 1 + 27173 25871 17034 17043 31589 31589 0.22891526040348253 MFLIRLLIILL 11 Unmodified _MFLIRLLIILL_ 0 0 0 REV__L1MB3_dup2968|chr3:33523104-33524360:+|1.367505614363834|0.0453456778897469|4.91|150.0|69|2|anti-sense REV__L1MB3_dup2968|chr3:33523104-33524360:+|1.367505614363834|0.0453456778897469|4.91|150.0|69|2|anti-sense MSMS UPN48_class_I_Rep_2 6 453.30560302734375 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 117.14 1 120.81 120.31 121.31 3.6607 0 0 0 0.38417 1 28069 28069 0.094841 0 1 + 27174 25871 17034 17043 31590 31590 0.22891526040348253 MFLLRRYV 8 Unmodified _MFLLRRYV_ 0 0 0 nc|ENSG00000170558|P19022-2|CDH2 nc|ENSG00000170558|P19022-2|CDH2 nc|ENSG00000170558|P19022-2|CDH2 MULTI-MSMS UPN47_class_I_Rep_3 4 549.8198852539062 2 549.318054 1096.62156 0.49112 0.00026978 0.016287 8.9466E-06 0.5074 0.00027873 549.3180393797746 92.109 0.33313 95.512 95.366 95.699 3.4034 57 46 2 0 0 0 0.82752 1 23016 23016 0.79363 0 1 121850 27175 16747 17035 17044 31591 31591 0.07710976458724872 MFLPHTEF 8 Unmodified _MFLPHTEF_ 0 0 0 ENST00000359276.8_1_X:16707672-16707711:-|nuORF ENST00000359276.8_1_X:16707672-16707711:-|nuORF ENST00000359276.8_1_X:16707672-16707711:-|nuORF MSMS UPN47_class_I_Rep_1 2 510.8525390625 2 511.244221 1020.47389 NaN NaN NaN NaN NaN NaN NaN 32.836 1 36.55 36.05 37.05 3.7131 0 0 0 0.40604 1 5703 5703 2.5775 1.0956 1 27176 6306 17036 17045 31592 31592 -0.035529598659422845 MFLPIALL 8 Unmodified _MFLPIALL_ 0 0 0 REV__L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|427|3|anti-sense REV__L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|427|3|anti-sense MSMS UPN48_class_I_Rep_2 6 459.2927551269531 2 459.280075 916.545597 NaN NaN NaN NaN NaN NaN NaN 85.825 1 89.531 89.031 90.031 3.7058 0 0 0 0.4032 1 20425 20425 6.3541 0 1 + 27177 29519 17037 17046 31593 31593 0.08398579558581787 MFMHRNRFEIR 11 Unmodified _MFMHRNRFEIR_ 0 0 0 REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|31|2|sense REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 513.2724609375 3 512.92734 1535.76019 NaN NaN NaN NaN NaN NaN NaN 33.993 1 33.993 33.493 34.493 0 0 0 0 0.38417 1 6016 6016 0.094841 0.094841 1 + 27178 27728 17038 17047 31594 31594 0.013741513647346437 MFNFFFFEK 9 Unmodified _MFNFFFFEK_ 0 0 0 L1MB3_dup13859|chr15:85626235-85626999:-|1.2133865828732575|0.021930240416605|5.79|150.0|45|2|anti-sense L1MB3_dup13859|chr15:85626235-85626999:-|1.2133865828732575|0.021930240416605|5.79|150.0|45|2|anti-sense L1MB3_dup13859|chr15:85626235-85626999:-|1.2133865828732575|0.021930240416605|5.79|150.0|45|2|anti-sense MSMS UPN47_class_I_Rep_3 4 628.7948608398438 2 628.794078 1255.5736 NaN NaN NaN NaN NaN NaN NaN 35.767 1 39.022 38.522 39.522 3.2547 0 0 0 0.3967 1 6664 6664 1.4819 0 1 27179 10347 17039 17048 31595 31595 -0.04396142251994206 MFPARCQSAH 10 Unmodified _MFPARCQSAH_ 0 0 0 ENST00000606441.1_1_6:3068607-3069069:-|nuORF ENST00000606441.1_1_6:3068607-3069069:-|nuORF ENST00000606441.1_1_6:3068607-3069069:-|nuORF MSMS UPN48_class_I_Rep_1 5 574.2930297851562 2 574.26041 1146.50627 NaN NaN NaN NaN NaN NaN NaN 63.285 1 66.747 66.247 67.247 3.4625 0 0 0 0.53105 1 14234 14234 2.4985 0.19575 1 27180 7683 17040 17049 31596 31596 -0.06112495734600998 MFPFISLSS 9 Unmodified _MFPFISLSS_ 0 0 0 REV__L1MD1_dup4646|chr11:11868072-11869669:-|1.107423614197775|0.0291479292137041|5.25|151.0|121|3|anti-sense REV__L1MD1_dup4646|chr11:11868072-11869669:-|1.107423614197775|0.0291479292137041|5.25|151.0|121|3|anti-sense MSMS UPN47_class_I_Rep_2 3 514.821044921875 2 514.759704 1027.50485 NaN NaN NaN NaN NaN NaN NaN 45.163 1 48.517 48.017 49.017 3.3539 0 0 0 0.39428 1 9490 9490 2.0598 0 1 + 27181 27346 17041 17050 31597 31597 -0.007798065516681163 MFPFVLHSYL 10 Unmodified _MFPFVLHSYL_ 0 0 0 L1MA4A_dup5746|chr18:9233152-9235131:-|3.501957393056787|0.3033553319804913|3.53|151.0|98|3|anti-sense L1MA4A_dup5746|chr18:9233152-9235131:-|3.501957393056787|0.3033553319804913|3.53|151.0|98|3|anti-sense L1MA4A_dup5746|chr18:9233152-9235131:-|3.501957393056787|0.3033553319804913|3.53|151.0|98|3|anti-sense MSMS UPN47_class_I_Rep_3 4 627.3230590820312 2 627.323002 1252.63145 NaN NaN NaN NaN NaN NaN NaN 55.402 1 58.58 58.08 59.08 3.1779 0 0 0 0.53105 1 12658 12658 3.9444 0 1 27182 9849 17042 17051 31598 31598 0.015241196734677942 MFPHHIKD 8 Unmodified _MFPHHIKD_ 0 0 0 REV__L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|11|2|sense REV__L1ME2z_dup6378|chr18:47881265-47881869:-|1.0263080708079055|0.1593759659239748|2.69|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 512.7543334960938 2 512.755287 1023.49602 NaN NaN NaN NaN NaN NaN NaN 38.855 1 42.093 41.593 42.593 3.238 0 0 0 0.40625 1 7611 7611 2.3027 0 1 + 27183 27933 17043 17052 31599 31599 -0.01478735397517994 MFPIFPIP 8 Unmodified _MFPIFPIP_ 0 0 0 REV__MLT1A0_dup6759|chr5:34089291-34089671:+|1.3039978444046298|0.0144198041413487|6.5|151.0|19|1|anti-sense REV__MLT1A0_dup6759|chr5:34089291-34089671:+|1.3039978444046298|0.0144198041413487|6.5|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.2665100097656 2 481.264425 960.514297 NaN NaN NaN NaN NaN NaN NaN 40.326 1 43.977 43.477 44.477 3.6509 0 0 0 0.40738 1 7157 7157 0.79363 0 1 + 27184 31599 17044 17053 31600 31600 0.03246006524477707 MFPPGIPH 8 Unmodified _MFPPGIPH_ 0 0 0 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 MULTI-MSMS UPN47_class_I_Rep_1 2 448.2291259765625 2 448.228374 894.442194 0.17697 7.9321E-05 1.3763 0.00061689 1.5532 0.00069621 448.22926580485097 109.24 0.59915 112.84 112.68 113.28 3.6046 129 69 3 0 0 0 0.82752 1 26894 26894 0.79363 0 1 3082500 27185 16838 17045 17054 31601 31601 -0.009249078292100421 MFQAHAPD 8 Unmodified _MFQAHAPD_ 0 0 0 REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|33|3|anti-sense REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|33|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 459.2927551269531 2 458.70272 915.390887 0.17326 7.9477E-05 -0.63385 -0.00029075 -0.46059 -0.00021127 458.70260511874557 85.568 0.52837 89.274 89.064 89.592 3.7058 115 59 2 0 0 0 0.72333 1 20425 20425 2.8892 0 1 146540 + 27186 31124 17046 17055 31602 31602 -0.07019276593939594 MFQAHAPD 8 Unmodified _MFQAHAPD_ 0 0 0 REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|33|3|anti-sense REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|33|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 458.70272 915.390887 0.048377 2.219E-05 -0.78958 -0.00036218 -0.7412 -0.00033999 458.7026639340324 85.968 0.25449 89.401 89.221 89.476 3.4329 0.072999 -0.00034282 NaN 2.8892 42 33 2 NaN NaN NaN NaN 0 NaN NaN 0 68361 + 27187 31124 17046 17055 -0.07019276593939594 MFQAHAPD 8 Unmodified _MFQAHAPD_ 0 0 0 REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|33|3|anti-sense REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|33|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 458.70272 915.390887 0.051437 2.3594E-05 -0.22554 -0.00010346 -0.17411 -7.9863E-05 458.7027062447327 85.65 0.53474 89.256 89.004 89.538 3.6059 -0.071814 0.00017463 NaN 2.8892 90 56 2 NaN NaN NaN NaN 0 NaN NaN 0 183560 + 27188 31124 17046 17055 -0.07019276593939594 MFQRRRRR 8 Unmodified _MFQRRRRR_ 0 0 0 ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP MSMS UPN46_class_I_Rep_3 1 603.3511352539062 2 603.349074 1204.6836 NaN NaN NaN NaN NaN NaN NaN 81.156 1 81.156 80.656 81.656 0 0 0 0 0.40746 1 19152 19152 0.69038 0.088878 1 27189 1752 17047 17056 31603 31603 0.08944140650419286 MFRIYFLA 8 Unmodified _MFRIYFLA_ 0 0 0 REV__Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|19|1|sense REV__Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|19|1|sense MSMS UPN47_class_I_Rep_3 4 530.7870483398438 2 530.786056 1059.55756 NaN NaN NaN NaN NaN NaN NaN 71.397 1 74.616 74.116 75.116 3.2188 0 0 0 0.40604 1 17516 17516 2.5775 0.27475 1 + 27190 32494 17048 17057 31604 31604 0.030161963017917515 MFSDIYKIWEI 11 Unmodified _MFSDIYKIWEI_ 0 0 0 nc|ENSG00000219491|Q9HAU6|TPT1P8 nc|ENSG00000219491|Q9HAU6|TPT1P8 nc|ENSG00000219491|Q9HAU6|TPT1P8 MSMS UPN47_class_I_Rep_1 2 482.2428283691406 3 482.244218 1443.71082 NaN NaN NaN NaN NaN NaN NaN 115.98 1 119.57 119.07 120.07 3.5943 0 0 0 0.38417 1 28713 28713 0.40827 0.24894 1 27191 16827 17049 17058 31605 31605 0.006717218369431066 MFSGSFRS 8 Unmodified _MFSGSFRS_ 0 0 0 L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|211|3|anti-sense L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|211|3|anti-sense L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|211|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 459.7104187011719 2 459.710545 917.406537 0.17787 8.1768E-05 0.18934 8.7043E-05 0.36721 0.00016881 459.71052939206857 96.388 0.98718 100.17 99.751 100.74 3.7804 339 130 3 0 0 0 0.82752 1 23006 23006 2.8892 0 1 6441500 27192 8478 17050 17059 31606 31606 -0.05546990076879865 MFSSSSFL 8 Unmodified _MFSSSSFL_ 0 0 0 L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|107|3|anti-sense L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|107|3|anti-sense L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|107|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.87139892578125 2 453.207304 904.400055 NaN NaN NaN NaN NaN NaN NaN 78.021 1 78.021 77.521 78.521 0 0 0 0 0.40738 1 18257 18257 0.79363 0 1 27193 12560 17051 17060 31607 31607 -0.05596928028239745 MFSVLFIVY 9 Unmodified _MFSVLFIVY_ 0 0 0 REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|50|1|anti-sense REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 559.5492553710938 2 559.801371 1117.58819 NaN NaN NaN NaN NaN NaN NaN 30.859 1 34.573 34.073 35.073 3.7146 0 0 0 0.39326 1 4498 4498 2.3027 0.4585 1 + 27194 27864 17052 17061 31608 31608 0.03409929896156427 MFVFTRRK 8 Unmodified _MFVFTRRK_ 0 0 0 REV__ENST00000492787.6_1_6:139234041-139235943:-|nuORF REV__ENST00000492787.6_1_6:139234041-139235943:-|nuORF MSMS UPN47_class_I_Rep_3 4 542.8080444335938 2 542.807854 1083.60115 NaN NaN NaN NaN NaN NaN NaN 32.805 1 36.091 35.591 36.591 3.2867 0 0 0 0.40738 1 5772 5772 0.79363 0 1 + 27195 22641 17053 17062 31609 31609 0.06269805798910966 MFVQILHP 8 Unmodified _MFVQILHP_ 0 0 0 L1ME2_dup10906|chr16:30266775-30266962:+|2.4106314421182624|0.0167626211151794|7.17|128.0|12|1|anti-sense;L1ME1_dup26619|chr16:29526791-29526978:+|2.515465109201589|0.015817468639798|7.31|129.0|12|1|anti-sense L1ME2_dup10906|chr16:30266775-30266962:+|2.4106314421182624|0.0167626211151794|7.17|128.0|12|1|anti-sense L1ME2_dup10906|chr16:30266775-30266962:+|2.4106314421182624|0.0167626211151794|7.17|128.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 492.780029296875 2 492.770406 983.526258 NaN NaN NaN NaN NaN NaN NaN 25.032 1 28.599 28.099 29.099 3.5667 0 0 0 0.40738 1 2852 2852 0.79363 0 1 27196 12346 17054 17063 31610 31610 0.03383623267689018 MFWFFFLGF 9 Unmodified _MFWFFFLGF_ 0 0 0 REV__L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|115|3|anti-sense REV__L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|115|3|anti-sense MSMS UPN47_class_I_Rep_3 4 621.297119140625 2 621.296256 1240.57796 NaN NaN NaN NaN NaN NaN NaN 51.975 1 55.181 54.681 55.681 3.2055 0 0 0 0.40038 1 11612 11612 0.6015 0 1 + 27197 28997 17055 17064 31611 31611 -0.03270633038414417 MFWFFFLGF 9 Unmodified _MFWFFFLGF_ 0 0 0 REV__L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|115|3|anti-sense REV__L1PA11_dup1074|chr4:106080070-106081670:+|1.3054823363548314|0.339925969285126|1.94|150.0|115|3|anti-sense MSMS UPN48_class_I_Rep_3 7 621.296142578125 2 621.296256 1240.57796 NaN NaN NaN NaN NaN NaN NaN 41.189 1 44.834 44.334 45.334 3.6458 0 0 0 0.40038 1 7412 7412 0.6015 0 1 + 27198 28997 17055 17064 31612 31612 -0.03270633038414417 MFWFFFVF 8 Unmodified _MFWFFFVF_ 0 0 0 L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|187|2|anti-sense L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|187|2|anti-sense L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|187|2|anti-sense MSMS UPN48_class_I_Rep_2 6 585.7786865234375 2 585.777699 1169.54085 NaN NaN NaN NaN NaN NaN NaN 22.001 1 25.647 25.147 26.147 3.6459 0 0 0 0.40738 1 2175 2175 0.79363 0 1 27199 12191 17056 17065 31613 31613 -0.03714304584173078 MFYFQFSFI 9 Unmodified _MFYFQFSFI_ 0 0 0 REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF MSMS UPN48_class_I_Rep_1 5 615.2890625 2 615.288628 1228.5627 NaN NaN NaN NaN NaN NaN NaN 72.751 1 76.224 75.724 76.724 3.4732 0 0 0 0.39518 1 17096 17096 1.8442 0.19162 1 + 27200 23020 17057 17066 31614 31614 -0.042435446262743426 MFYIFFVPF 9 Unmodified _MFYIFFVPF_ 0 0 0 L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|196|3|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|196|3|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|196|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 605.804443359375 2 605.803914 1209.59328 0.52016 0.00031512 -0.4833 -0.00029279 0.036859 2.2329E-05 605.8036970631803 55.965 0.42172 55.965 55.696 56.117 0 85 47 2 0 0 0 0.43982 1 12132 12132 5.2307 0 1 321030 27201 15232 17058 17067 31615 31615 -0.003137662412427744 MFYIFFVPF 9 Unmodified _MFYIFFVPF_ 0 0 0 L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|196|3|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|196|3|anti-sense L1PB2_dup229|chr2:44533539-44536327:+|2.1399493592872734|0.0214113400994075|6.64|151.0|196|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 605.804931640625 2 605.803914 1209.59328 0.43264 0.0002621 -0.59843 -0.00036253 -0.16579 -0.00010043 605.8039366503004 51.017 0.75568 54.627 54.283 55.038 3.6105 111 49 3 0 0 0 0.37599 1 10339 10339 5.2307 0 1 447470 27202 15232 17058 17067 31616 31616 -0.003137662412427744 MFYMFLIY 8 Unmodified _MFYMFLIY_ 0 0 0 ENST00000256151.7_1_12:82746644-82746788:-|nuORF ENST00000256151.7_1_12:82746644-82746788:-|nuORF ENST00000256151.7_1_12:82746644-82746788:-|nuORF MSMS UPN47_class_I_Rep_2 3 564.2700805664062 2 564.26885 1126.52315 NaN NaN NaN NaN NaN NaN NaN 30.124 1 33.606 33.106 34.106 3.4821 0 0 0 0.40738 1 4921 4921 0.79363 0 1 27203 5927 17059 17068 31617 31617 -0.035053879013275946 MGFFPFRV 8 Unmodified _MGFFPFRV_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MSMS UPN48_class_I_Rep_2 6 500.7572326660156 2 500.757298 999.500044 NaN NaN NaN NaN NaN NaN NaN 73.594 1 77.172 76.672 77.672 3.5779 0 0 0 0.40738 1 17286 17286 0.79363 0 1 27204 2609 17060 17069 31618 31618 0.00027354096209819545 MGGGQNTNISR 11 Unmodified _MGGGQNTNISR_ 0 0 0 Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|19|1|sense Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|19|1|sense Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|19|1|sense MSMS UPN47_class_I_Rep_3 4 567.7421264648438 2 567.769654 1133.52475 NaN NaN NaN NaN NaN NaN NaN 113.87 1 117.36 116.86 117.86 3.4963 0 0 0 0.38417 1 27943 27943 1.3295 0.5359 1 27205 33180 17061 17070 31619 31619 -0.036666625590669355 MGHVQMRRIY 10 Unmodified _MGHVQMRRIY_ 0 0 0 L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|186|2|anti-sense L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|186|2|anti-sense L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|186|2|anti-sense MSMS UPN48_class_I_Rep_1 5 645.8341064453125 2 645.831534 1289.64852 NaN NaN NaN NaN NaN NaN NaN 61.351 1 64.818 64.318 65.318 3.4678 0 0 0 0.53105 1 13642 13642 3.5965 0 1 27206 13919 17062 17071 31620 31620 0.015277170076160473 MGIHPKELK 9 Unmodified _MGIHPKELK_ 0 0 0 L1M3_dup1375|chr4:39765978-39766567:-|3.10438723170445|0.1618810401101505|4.26|151.0|16|2|sense L1M3_dup1375|chr4:39765978-39766567:-|3.10438723170445|0.1618810401101505|4.26|151.0|16|2|sense L1M3_dup1375|chr4:39765978-39766567:-|3.10438723170445|0.1618810401101505|4.26|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 526.3618774414062 2 526.799694 1051.58484 NaN NaN NaN NaN NaN NaN NaN 33.493 1 36.933 36.433 37.433 3.4398 0 0 0 0.39518 1 5940 5940 1.8442 0 1 27207 8751 17063 17072 31621 31621 0.06110679842140598 MGKFHRPK 8 Unmodified _MGKFHRPK_ 0 0 0 L1MD2_dup8084|chr12:118337082-118338081:+|5.864717802561418|0.0185668617927362|8.3|151.0|39|3|sense L1MD2_dup8084|chr12:118337082-118338081:+|5.864717802561418|0.0185668617927362|8.3|151.0|39|3|sense L1MD2_dup8084|chr12:118337082-118338081:+|5.864717802561418|0.0185668617927362|8.3|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 500.7798156738281 2 500.779096 999.54364 NaN NaN NaN NaN NaN NaN NaN 31.602 1 35.243 34.743 35.743 3.641 0 0 0 0.40746 1 4774 4774 0.69038 0 1 27208 12037 17064 17073 31622 31622 0.04384963593338398 MGKRSEETF 9 Unmodified _MGKRSEETF_ 0 0 0 L1PA5_dup168|chr1:66966050-66968009:-|5.697800701322859|0.4635222562904853|3.62|151.0|11|1|sense;L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|43|3|sense L1PA5_dup168|chr1:66966050-66968009:-|5.697800701322859|0.4635222562904853|3.62|151.0|11|1|sense L1PA5_dup168|chr1:66966050-66968009:-|5.697800701322859|0.4635222562904853|3.62|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 542.7599487304688 2 542.758223 1083.50189 NaN NaN NaN NaN NaN NaN NaN 26.233 1 30 29.5 30.5 3.7663 0 0 0 0.39598 1 3295 3295 1.6526 0 1 27209 9444 17065 17074 31623 31623 -0.036516816765242766 MGLKHAIL 8 Unmodified _MGLKHAIL_ 0 0 0 REV__L1MC3_dup4424|chr5:180023043-180024464:+|2.389510571297442|0.0229332435664335|6.7|150.0|11|1|sense REV__L1MC3_dup4424|chr5:180023043-180024464:+|2.389510571297442|0.0229332435664335|6.7|150.0|11|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 441.7881164550781 2 441.765123 881.515694 0.13983 6.1772E-05 -1.113 -0.00049167 -0.97313 -0.0004299 441.7648341293357 40.705 0.17467 40.705 40.613 40.788 0 24 20 2 0 0 0 0.72333 1 7923 7923 2.3027 1.5091 1 402940 + 27210 26745 17066 17075 31624 31624 0.07019640613259526 MGLKHAIL 8 Unmodified _MGLKHAIL_ 0 0 0 REV__L1MC3_dup4424|chr5:180023043-180024464:+|2.389510571297442|0.0229332435664335|6.7|150.0|11|1|sense REV__L1MC3_dup4424|chr5:180023043-180024464:+|2.389510571297442|0.0229332435664335|6.7|150.0|11|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 441.765123 881.515694 0.094477 4.1737E-05 -1.1655 -0.00051488 -1.071 -0.00047314 441.7648071959628 37.061 0.029709 40.763 40.738 40.767 3.7021 0.028839 -4.3037E-05 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 22710 + 27211 26745 17066 17075 0.07019640613259526 MGMIFCLPVE 10 Unmodified _MGMIFCLPVE_ 0 0 0 LTR49-int_dup594|chr5:43576780-43577579:-|1.3447363282536182|0.4308620151562565|1.64|151.0|20|3|sense LTR49-int_dup594|chr5:43576780-43577579:-|1.3447363282536182|0.4308620151562565|1.64|151.0|20|3|sense LTR49-int_dup594|chr5:43576780-43577579:-|1.3447363282536182|0.4308620151562565|1.64|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 570.2665405273438 2 570.268524 1138.52249 NaN NaN NaN NaN NaN NaN NaN 67.054 1 70.318 69.818 70.818 3.2636 0 0 0 0.53105 1 16149 16149 3.5965 0.31518 1 27212 15668 17067 17076 31625 31625 -0.04122550612714804 MGNEEKLHQY 10 Unmodified _MGNEEKLHQY_ 0 0 0 REV__nc|ENSG00000064102|Q9NVM9-2|INTS13 REV__nc|ENSG00000064102|Q9NVM9-2|INTS13 MULTI-MSMS UPN48_class_I_Rep_3 7 416.8605041503906 3 416.860767 1247.56047 -0.0093014 -3.8774E-06 -0.5 -0.00020843 -0.5093 -0.00021231 416.86053352722473 25.847 0.79549 29.614 29.365 30.16 3.7663 138 93 2 0 0 0 0.56078 1 3288 3288 1.5923 0 1 122470 + 27213 17736 17068 17077 31626 31626 -0.053406251020078344 MGNIRDEESQ 10 Unmodified _MGNIRDEESQ_ 0 0 0 REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS UPN47_class_I_Rep_2 3 589.7614135742188 2 589.758952 1177.50335 NaN NaN NaN NaN NaN NaN NaN 36.063 1 39.474 38.974 39.974 3.4114 0 0 0 0.53105 1 6722 6722 1.4819 0.68827 1 + 27214 18285 17069 17078 31627 31627 -0.07830092378412701 MGPIFGVHDH 10 Unmodified _MGPIFGVHDH_ 0 0 0 REV__L1PA4_dup11794|chr22:24372102-24374785:+|8.134110712379785|0.163437252878881|5.64|151.0|60|3|sense REV__L1PA4_dup11794|chr22:24372102-24374785:+|8.134110712379785|0.163437252878881|5.64|151.0|60|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 555.7658081054688 2 555.263476 1108.5124 -0.33962 -0.00018858 1.9759 0.0010972 1.6363 0.00090857 555.2645968497652 20.029 0.39933 23.38 23.041 23.44 3.3514 47 37 2 0 0 0 0.56309 1 1941 1941 1.6526 0.17072 1 59189 + 27215 28869 17070 17079 31628 31628 -0.03751654231427892 MGPRSIRGAS 10 Unmodified _MGPRSIRGAS_ 0 0 0 REV__ENST00000548184.1_1_12:57644959-57689258:-|nuORF REV__ENST00000548184.1_1_12:57644959-57689258:-|nuORF MSMS UPN48_class_I_Rep_2 6 516.27490234375 2 516.274375 1030.5342 NaN NaN NaN NaN NaN NaN NaN 44.41 1 48.171 47.671 48.671 3.7617 0 0 0 0.53105 1 8460 8460 1.3295 0 1 + 27216 20690 17071 17080 31629 31629 0.020151505171497774 MGRHCQMWR 9 Unmodified _MGRHCQMWR_ 0 0 0 MER101-int_dup924|chr16:21859491-21859980:+|6.097841327582987|0.1867126022052047|5.03|146.0|10|2|sense MER101-int_dup924|chr16:21859491-21859980:+|6.097841327582987|0.1867126022052047|5.03|146.0|10|2|sense MER101-int_dup924|chr16:21859491-21859980:+|6.097841327582987|0.1867126022052047|5.03|146.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 602.6907348632812 2 602.76788 1203.52121 NaN NaN NaN NaN NaN NaN NaN 22.491 1 25.935 25.435 26.435 3.4447 0 0 0 0.4007 1 2679 2679 0.52476 0 1 27217 15753 17072 17081 31630 31630 -0.07241327138262932 MGSCEWCPCC 10 Unmodified _MGSCEWCPCC_ 0 0 0 REV__ENSG00000165995.22,CACNB2,chr10,+,I22.1,18536197,18538179|36|4.55|1|intron REV__ENSG00000165995.22,CACNB2,chr10,+,I22.1,18536197,18538179|36|4.55|1|intron MSMS UPN46_class_I_Rep_3 1 559.6651611328125 2 559.665251 1117.31595 NaN NaN NaN NaN NaN NaN NaN 98.357 1 98.357 97.857 98.857 0 0 0 0 0.53105 1 23945 23945 0 0 1 + 27218 20148 17073 17082 31631 31631 -0.23801609775000543 MGVKSHRR 8 Unmodified _MGVKSHRR_ 0 0 0 REV__LTR28C_dup321|chr20:35810230-35810539:+|1.344877453190437|0.0072995308409076|7.53|151.0|18|2|anti-sense REV__LTR28C_dup321|chr20:35810230-35810539:+|1.344877453190437|0.0072995308409076|7.53|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.77130126953125 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 111.62 1 115.19 114.69 115.69 3.572 0 0 0 0.40625 1 27541 27541 2.3027 0 1 + 27219 30896 17074 17083 31632 31632 0.0430689144519647 MGWRSWEER 9 Unmodified _MGWRSWEER_ 0 0 0 ENST00000263563.6_1_10:72238592-72285689:+|nuORF ENST00000263563.6_1_10:72238592-72285689:+|nuORF ENST00000263563.6_1_10:72238592-72285689:+|nuORF MSMS UPN47_class_I_Rep_3 4 618.7805786132812 2 618.782564 1235.55058 NaN NaN NaN NaN NaN NaN NaN 46.246 1 49.49 48.99 49.99 3.2439 0 0 0 0.39518 1 9876 9876 1.8442 0.19162 1 27220 5980 17075 17084 31633 31633 -0.05777768316761467 MGYSFDDTFTI 11 Unmodified _MGYSFDDTFTI_ 0 0 0 REV__ENST00000535143.1_1_12:65737965-65857099:+|nuORF REV__ENST00000535143.1_1_12:65737965-65857099:+|nuORF MSMS UPN46_class_I_Rep_3 1 648.7760009765625 2 648.776279 1295.538 NaN NaN NaN NaN NaN NaN NaN 67.62 1 67.62 67.12 68.12 0 0 0 0 0.38417 1 15400 15400 1.1933 0.59184 1 + 27221 17434 17076 17085 31634 31634 -0.0979426929031888 MHAVFLFSY 9 Unmodified _MHAVFLFSY_ 0 0 0 ENSG00000249859.12,PVT1,chr8,+,I8.1,127852713,127854395|34|6.9|1|intron ENSG00000249859.12,PVT1,chr8,+,I8.1,127852713,127854395|34|6.9|1|intron ENSG00000249859.12,PVT1,chr8,+,I8.1,127852713,127854395|34|6.9|1|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 557.2728271484375 2 557.773145 1113.53174 0.38581 0.00021519 -0.61564 -0.00034339 -0.22983 -0.00012819 557.7730231365156 56.735 0.34882 59.907 59.655 60.004 3.1721 32 19 2 0 0 0 0.12235 1 13008 13008 4.756 0 1 103500 27222 5737 17077 17086 31635 31635 -0.020486979405177408 MHCFPWLLE 9 Unmodified _MHCFPWLLE_ 0 0 0 REV__MLT1A0_dup20418|chr22:23222839-23223198:-|1.048308177767424|0.0063168792720328|7.37|150.0|7|2|sense REV__MLT1A0_dup20418|chr22:23222839-23223198:-|1.048308177767424|0.0063168792720328|7.37|150.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 588.2716674804688 2 588.272455 1174.53036 NaN NaN NaN NaN NaN NaN NaN 80.936 1 84.259 83.759 84.759 3.3231 0 0 0 0.38299 1 20248 20248 4.756 0.42677 1 + 27223 31594 17078 17087 31636 31636 -0.04992655300929982 MHCFRHSI 8 Unmodified _MHCFRHSI_ 0 0 0 REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense MSMS UPN47_class_I_Rep_3 4 515.7764282226562 2 515.739114 1029.46367 NaN NaN NaN NaN NaN NaN NaN 33.129 1 36.416 35.916 36.916 3.2867 0 0 0 0.40738 1 5868 5868 0.79363 0 1 + 27224 23906 17079 17088 31637 31637 -0.04987846072162938 MHCFRHSI 8 Unmodified _MHCFRHSI_ 0 0 0 REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7379760742188 2 515.739114 1029.46367 NaN NaN NaN NaN NaN NaN NaN 28.013 1 31.571 31.071 32.071 3.5571 0 0 0 0.40738 1 3691 3691 0.79363 0 1 + 27225 23906 17079 17088 31638 31638 -0.04987846072162938 MHCFRHSI 8 Unmodified _MHCFRHSI_ 0 0 0 REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7390747070312 2 515.739114 1029.46367 NaN NaN NaN NaN NaN NaN NaN 28.156 1 31.713 31.213 32.213 3.5571 0 0 0 0.40738 1 3730 3730 0.79363 0 1 + 27226 23906 17079 17088 31639 31639 -0.04987846072162938 MHCFRHSI 8 Unmodified _MHCFRHSI_ 0 0 0 REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|314|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7377319335938 2 515.739114 1029.46367 NaN NaN NaN NaN NaN NaN NaN 25.942 1 29.575 29.075 30.075 3.6332 0 0 0 0.40738 1 3232 3232 0.79363 0 1 + 27227 23906 17079 17088 31640 31640 -0.04987846072162938 MHFINKKI 8 Unmodified _MHFINKKI_ 0 0 0 REV__ENSG00000148488|ENST00000377602|ST8SIA6 REV__ENSG00000148488|ENST00000377602|ST8SIA6 MSMS UPN48_class_I_Rep_1 5 515.7981567382812 2 515.796955 1029.57936 NaN NaN NaN NaN NaN NaN NaN 47.704 1 51.226 50.726 51.726 3.5219 0 0 0 0.40625 1 9456 9456 2.3027 0 1 + 27228 19590 17080 17089 31641 31641 0.06575001050327955 MHGRMRWY 8 Unmodified _MHGRMRWY_ 0 0 0 REV__MLT1H_dup183|chr1:44628922-44629360:-|4.12747918183579|0.0330190913236609|6.97|150.0|17|3|sense REV__MLT1H_dup183|chr1:44628922-44629360:-|4.12747918183579|0.0330190913236609|6.97|150.0|17|3|sense MSMS UPN48_class_I_Rep_1 5 568.765625 2 568.765663 1135.51677 NaN NaN NaN NaN NaN NaN NaN 33.412 1 36.932 36.432 37.432 3.5201 0 0 0 0.40746 1 5207 5207 0.69038 0 1 + 27229 31741 17081 17090 31642 31642 -0.04556468289501936 MHHQFLLMDV 10 Unmodified _MHHQFLLMDV_ 0 0 0 REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|106|2|anti-sense REV__L1MB5_dup3531|chr8:70358081-70359738:+|1.544502939973604|0.0156450380759723|6.63|151.0|106|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 636.309814453125 2 635.807193 1269.59983 0.51646 0.00032837 -0.9314 -0.00059219 -0.41494 -0.00026382 635.8064319076766 53.569 0.60796 56.896 56.652 57.26 3.3266 74 42 2 0 0 0 0.52083 1 12067 12067 9.3831 1.2276 1 121130 + 27230 26057 17082 17091 31643 31643 -0.024181963521641592 MHICHMETVV 10 Unmodified _MHICHMETVV_ 0 0 0 REV__L1ME3_dup876|chr2:39046987-39047580:-|1.7826130695129372|0.1052354433823396|4.08|151.0|6|1|sense REV__L1ME3_dup876|chr2:39046987-39047580:-|1.7826130695129372|0.1052354433823396|4.08|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 600.272216796875 2 600.272129 1198.52971 NaN NaN NaN NaN NaN NaN NaN 61.649 1 64.908 64.408 65.408 3.2594 0 0 0 0.53105 1 14507 14507 1.8442 0.19162 1 + 27231 27972 17083 17092 31644 31644 -0.06161818012310505 MHIIVYYY 8 Unmodified _MHIIVYYY_ 0 0 0 REV__L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|90|3|sense REV__L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|90|3|sense MSMS UPN48_class_I_Rep_2 6 551.2536010742188 2 551.275521 1100.53649 NaN NaN NaN NaN NaN NaN NaN 47.045 1 50.794 50.294 51.294 3.7494 0 0 0 0.39167 1 9260 9260 11.114 0 1 + 27232 28776 17084 17093 31645 31645 -0.009758137977541992 MHIVLHVF 8 Unmodified _MHIVLHVF_ 0 0 0 L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|32|1|anti-sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|32|1|anti-sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_1 2 498.27783203125 2 498.278398 994.542243 NaN NaN NaN NaN NaN NaN NaN 80.591 1 84.078 83.578 84.578 3.4874 0 0 0 0.40581 1 20078 20078 2.8892 0 1 27233 12800 17085 17094 31646 31646 0.04475329504589354 MHKHAYTYL 9 Unmodified _MHKHAYTYL_ 0 0 0 L1ME4b_dup1084|chr1:176052639-176053140:-|1.4028573191574052|0.0131472025680151|6.74|151.0|28|2|anti-sense L1ME4b_dup1084|chr1:176052639-176053140:-|1.4028573191574052|0.0131472025680151|6.74|151.0|28|2|anti-sense L1ME4b_dup1084|chr1:176052639-176053140:-|1.4028573191574052|0.0131472025680151|6.74|151.0|28|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.2876586914062 2 582.286951 1162.55935 0.20764 0.0001209 -0.71864 -0.00041846 -0.51101 -0.00029755 582.286384869614 49.273 0.42743 52.932 52.573 53 3.6592 52 30 2 0 0 0 0.48846 1 10610 10610 1.8442 0.19162 1 143260 27234 12880 17086 17095 31647 31647 -0.015427946802674342 MHKRFWRL 8 Unmodified _MHKRFWRL_ 0 0 0 REV__L1MC4_dup20185|chr15:56973335-56974466:+|1.30140308525759|0.0155545765487621|6.39|151.0|14|1|sense REV__L1MC4_dup20185|chr15:56973335-56974466:+|1.30140308525759|0.0155545765487621|6.39|151.0|14|1|sense MSMS UPN47_class_I_Rep_3 4 587.7435302734375 2 587.326745 1172.63894 NaN NaN NaN NaN NaN NaN NaN 65.442 1 68.622 68.122 69.122 3.1795 0 0 0 0.40738 1 15717 15717 0.79363 0.19213 1 + 27235 26859 17087 17096 31648 31648 0.059523167843963165 MHKSINTVHQ 10 Unmodified _MHKSINTVHQ_ 0 0 0 L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|5|1|sense L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|5|1|sense L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 597.8043212890625 2 597.806039 1193.59753 NaN NaN NaN NaN NaN NaN NaN 69.352 1 72.807 72.307 73.307 3.4548 0 0 0 0.53105 1 16083 16083 1.4819 0 1 27236 9911 17088 17097 31649 31649 0.008470912344137105 MHLFLMQSS 9 Unmodified _MHLFLMQSS_ 0 0 0 REV__L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|63|2|anti-sense REV__L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|63|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 547.2603149414062 2 547.262087 1092.50962 0.02128 1.1646E-05 -0.039801 -2.1782E-05 -0.018521 -1.0136E-05 547.2621535711357 40.311 0.53346 43.682 43.437 43.971 3.3712 59 34 2 0 0 0 0.48414 1 8101 8101 2.3027 0 1 102340 + 27237 27405 17089 17098 31650 31650 -0.03293245680583823 MHLHEPQY 8 Unmodified _MHLHEPQY_ 0 0 0 REV__MLT1G3_dup2072|chr13:50121606-50121842:+|1.2117612063933096|0.0324930219546676|5.22|150.0|13|1|anti-sense REV__MLT1G3_dup2072|chr13:50121606-50121842:+|1.2117612063933096|0.0324930219546676|5.22|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 527.7432861328125 2 527.742376 1053.4702 NaN NaN NaN NaN NaN NaN NaN 119.93 1 123.41 122.91 123.91 3.4793 0 0 0 0.40738 1 29395 29395 0.79363 0 1 + 27238 31736 17090 17099 31651 31651 -0.05439629639795385 MHLHMKEM 8 Unmodified _MHLHMKEM_ 0 0 0 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 REV__nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS UPN47_class_I_Rep_2 3 528.74462890625 2 528.743008 1055.47146 NaN NaN NaN NaN NaN NaN NaN 25.343 1 28.826 28.326 29.326 3.483 0 0 0 0.40738 1 3502 3502 0.79363 0.10326 1 + 27239 21092 17091 17100 31652 31652 -0.05405454866877335 MHLKFHKL 8 Unmodified _MHLKFHKL_ 0 0 0 REV__MER33_dup627|chr1:206035795-206036039:+|1.835354782565519|0.0380955135262557|5.59|147.0|10|2|sense REV__MER33_dup627|chr1:206035795-206036039:+|1.835354782565519|0.0380955135262557|5.59|147.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.3062133789062 2 527.304947 1052.59534 0.30864 0.00016275 0.50611 0.00026687 0.81475 0.00042962 527.3051652381563 90.024 0.60785 93.649 93.413 94.021 3.6255 143 77 3 0 0 0 0.82752 1 21702 21702 2.3027 0 1 298200 + 27240 31261 17092 17101 31653 31653 0.07114707287246347 MHLKFHKL 8 Unmodified _MHLKFHKL_ 0 0 0 REV__MER33_dup627|chr1:206035795-206036039:+|1.835354782565519|0.0380955135262557|5.59|147.0|10|2|sense REV__MER33_dup627|chr1:206035795-206036039:+|1.835354782565519|0.0380955135262557|5.59|147.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.3053588867188 2 527.304947 1052.59534 0.40485 0.00021348 0.49932 0.00026329 0.90417 0.00047677 527.3051023839442 89.954 0.74422 93.701 93.326 94.07 3.7471 159 101 2 0 0 0 0.82752 1 21410 21410 2.3027 0 1 413970 + 27241 31261 17092 17101 31654 31654 0.07114707287246347 MHLNFLHV 8 Unmodified _MHLNFLHV_ 0 0 0 L1MC1_dup2534|chr3:108542193-108542560:-|1.1888537662313383|0.1901916437401919|2.64|151.0|28|2|anti-sense;L1MC1_dup2140|chr3:11516347-11516800:+|1.6126391468567578|0.0203063379087864|6.31|151.0|18|1|anti-sense L1MC1_dup2534|chr3:108542193-108542560:-|1.1888537662313383|0.1901916437401919|2.64|151.0|28|2|anti-sense L1MC1_dup2534|chr3:108542193-108542560:-|1.1888537662313383|0.1901916437401919|2.64|151.0|28|2|anti-sense MSMS UPN47_class_I_Rep_3 4 505.7554626464844 2 505.765655 1009.51676 NaN NaN NaN NaN NaN NaN NaN 31.207 1 34.506 34.006 35.006 3.2991 0 0 0 0.40604 1 5287 5287 2.5775 0 1 27242 11123 17093 17102 31655 31655 0.012378549821619345 MHLTKVKYPAP 11 Unmodified _MHLTKVKYPAP_ 0 0 0 L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|148|3|sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|148|3|sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|148|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 642.3622436523438 2 642.860283 1283.70601 0.51489 0.000331 1.8953 0.0012184 2.4102 0.0015494 643.3625822437169 104.54 0.17303 108.06 107.95 108.12 3.5205 37 27 2 0 0 0 22.551 1 25615 25615 3.2813 1.6287 1 45665000 27243 13701 17094 17103 31656 31656 0.07550882484815702 MHNTRTQNLF 10 Unmodified _MHNTRTQNLF_ 0 0 0 REV__L1ME1_dup5139|chr2:230772785-230773314:+|1.0508914525743709|0.0079765199964095|7.04|151.0|1|1|sense REV__L1ME1_dup5139|chr2:230772785-230773314:+|1.0508914525743709|0.0079765199964095|7.04|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 631.3214721679688 2 631.308946 1260.60334 NaN NaN NaN NaN NaN NaN NaN 72.82 1 76.117 75.617 76.617 3.2971 0 0 0 0.53105 1 17871 17871 3.2813 0.97858 1 + 27244 27775 17095 17104 31657 31657 -0.01653810253969823 MHPYFQIL 8 Unmodified _MHPYFQIL_ 0 0 0 MER112_dup618|chr2:112653514-112653732:-|1.93327799384745|0.3610752027756225|2.42|151.0|12|2|anti-sense MER112_dup618|chr2:112653514-112653732:-|1.93327799384745|0.3610752027756225|2.42|151.0|12|2|anti-sense MER112_dup618|chr2:112653514-112653732:-|1.93327799384745|0.3610752027756225|2.42|151.0|12|2|anti-sense MSMS UPN46_class_I_Rep_3 1 524.40283203125 2 524.767863 1047.52117 NaN NaN NaN NaN NaN NaN NaN 80.216 1 80.216 79.716 80.716 0 0 0 0 0.40738 1 18885 18885 0.79363 0 1 27245 15770 17096 17105 31658 31658 -0.0006868059492717293 MHQHPHPF 8 Unmodified _MHQHPHPF_ 0 0 0 REV__L1MB2_dup7173|chr16:23919564-23920317:-|2.8998467654049622|0.0131603722461119|7.78|151.0|52|3|anti-sense REV__L1MB2_dup7173|chr16:23919564-23920317:-|2.8998467654049622|0.0131603722461119|7.78|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_1 5 515.8015747070312 2 515.737428 1029.4603 NaN NaN NaN NaN NaN NaN NaN 113.35 1 116.98 116.48 117.48 3.6314 0 0 0 0.40738 1 27535 27535 0.79363 0 1 + 27246 25764 17097 17106 31659 31659 -0.05324772854510229 MHQIWEPN 8 Unmodified _MHQIWEPN_ 0 0 0 REV__SVA_D_dup662|chr8:63179220-63180984:-|2.9059433684881864|0.3449506856636293|3.07|151.0|61|2|anti-sense REV__SVA_D_dup662|chr8:63179220-63180984:-|2.9059433684881864|0.3449506856636293|3.07|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2577514648438 2 527.742376 1053.4702 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.96 114.46 115.46 3.6654 0 0 0 0.40625 1 26408 26408 2.3027 0 1 + 27247 32195 17098 17107 31660 31660 -0.05439629639795385 MHQPGYQQ 8 Unmodified _MHQPGYQQ_ 0 0 0 REV__nc|ENSG00000204278|A6NFC5-3|TMEM235 REV__nc|ENSG00000204278|A6NFC5-3|TMEM235 MSMS UPN47_class_I_Rep_2 3 494.718994140625 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 33.204 1 36.658 36.158 37.158 3.4547 0 0 0 0.40625 1 5852 5852 2.3027 0 1 + 27248 21185 17099 17108 31661 31661 -0.07096489190928423 MHRNRLVW 8 Unmodified _MHRNRLVW_ 0 0 0 REV__nc|ENSG00000096264|O95944-3|NCR2 REV__nc|ENSG00000096264|O95944-3|NCR2 MSMS UPN48_class_I_Rep_3 7 556.2996215820312 2 556.300727 1110.5869 NaN NaN NaN NaN NaN NaN NaN 58.137 1 61.669 61.169 62.169 3.5317 0 0 0 0.40604 1 12571 12571 2.5775 0.73324 1 + 27249 31948 17100 17109 31662 31662 0.03603153370613654 MHTKKGTT 8 Unmodified _MHTKKGTT_ 0 0 0 L1PA13_dup4616|chr9:41403207-41403915:+|1.800787659377104|0.1949297655234214|3.21|150.0|8|1|sense;L1PA13_dup4614|chr9:40061592-40062300:-|1.0186438387117696|0.172571455738234|2.56|147.0|8|1|sense L1PA13_dup4616|chr9:41403207-41403915:+|1.800787659377104|0.1949297655234214|3.21|150.0|8|1|sense L1PA13_dup4616|chr9:41403207-41403915:+|1.800787659377104|0.1949297655234214|3.21|150.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 452.2392272949219 2 452.23947 902.464386 NaN NaN NaN NaN NaN NaN NaN 16.588 1 19.95 19.45 20.45 3.3619 0 0 0 0.40738 1 1059 1059 0.79363 0 1 27250 13756 17101 17110 31663 31663 0.009252718485413425 MHTRLHWA 8 Unmodified _MHTRLHWA_ 0 0 0 REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|36|2|sense REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 526.2678833007812 2 526.266353 1050.51815 NaN NaN NaN NaN NaN NaN NaN 113.5 1 117.08 116.58 117.58 3.572 0 0 0 0.40738 1 28008 28008 0.79363 0.10326 1 + 27251 30638 17102 17111 31664 31664 -0.005085109290803302 MHTVRGSSLP 10 Unmodified _MHTVRGSSLP_ 0 0 0 REV__LTR13_dup296|chr13:113621367-113622349:+|1.168356287503212|0.1356906191278602|3.11|151.0|8|1|sense REV__LTR13_dup296|chr13:113621367-113622349:+|1.168356287503212|0.1356906191278602|3.11|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 542.781494140625 2 542.782033 1083.54951 NaN NaN NaN NaN NaN NaN NaN 78.773 1 82.308 81.808 82.808 3.5352 0 0 0 0.53105 1 18783 18783 1.4819 0 1 + 27252 30835 17103 17112 31665 31665 0.011080173143454886 MHTWSVSA 8 Unmodified _MHTWSVSA_ 0 0 0 REV__ENST00000565264.1_1_15:75728701-75743878:-|nuORF REV__ENST00000565264.1_1_15:75728701-75743878:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 459.7105712890625 2 459.710545 917.406537 -0.075249 -3.4593E-05 0.22409 0.00010302 0.14885 6.8426E-05 459.7106994343619 96.862 1.6942 100.28 99.313 101.01 3.414 485 239 3 0 0 0 0.82752 1 24078 24078 5.2307 2.3415 1 9614400 + 27253 23057 17104 17113 31666 31666 -0.05546990076891234 MHVHGIIII 9 Unmodified _MHVHGIIII_ 0 0 0 L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|27|2|sense L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|27|2|sense L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|27|2|sense MSMS UPN47_class_I_Rep_3 4 516.8052368164062 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 98.543 1 101.98 101.48 102.48 3.4328 0 0 0 0.4029 1 24403 24403 0 0 1 27254 10300 17105 17114 31667 31667 0.08047287567410422 MHVIFYLG 8 Unmodified _MHVIFYLG_ 0 0 0 L1ME1_dup25911|chr15:66445448-66445872:+|1.6746697384817577|0.0553724346828072|4.92|151.0|25|1|anti-sense L1ME1_dup25911|chr15:66445448-66445872:+|1.6746697384817577|0.0553724346828072|4.92|151.0|25|1|anti-sense L1ME1_dup25911|chr15:66445448-66445872:+|1.6746697384817577|0.0553724346828072|4.92|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_2 3 490.258056640625 2 490.257131 978.499709 NaN NaN NaN NaN NaN NaN NaN 25.678 1 29.173 28.673 29.673 3.4945 0 0 0 0.40738 1 3602 3602 0.79363 0 1 27255 12336 17106 17115 31668 31668 0.00959934376351157 MHVLKYHILR 10 Unmodified _MHVLKYHILR_ 0 0 0 L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 437.2571105957031 3 437.256904 1308.74888 0.13117 5.7357E-05 0.99639 0.00043568 1.1276 0.00049303 437.25744482531707 90.775 0.16591 94.465 94.389 94.555 3.6899 32 21 2 0 0 0 0.56433 1 22665 22665 0.77653 0.56967 1 152560 27256 9866 17107 17116 31669 31669 0.10685697332905875 MHVLKYHILR 10 Unmodified _MHVLKYHILR_ 0 0 0 L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 437.256904 1308.74888 0.15249 6.6676E-05 0.91763 0.00040124 1.0701 0.00046791 437.25726086233396 94.489 0.19451 94.489 94.332 94.527 0 0.061752 -0.00042586 NaN 0.77653 50 24 3 NaN NaN NaN NaN 0 NaN NaN 0 501620 27257 9866 17107 17116 0.10685697332905875 MHVLKYHILR 10 Unmodified _MHVLKYHILR_ 0 0 0 L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 437.256904 1308.74888 -0.17729 -7.7523E-05 1.5924 0.00069628 1.4151 0.00061876 437.2576867105253 90.829 0.32631 94.291 94.146 94.473 3.4613 -0.13595 0.00045927 NaN 0.77653 72 43 2 NaN NaN NaN NaN 0 NaN NaN 0 183560 27258 9866 17107 17116 0.10685697332905875 MHVLKYHILR 10 Unmodified _MHVLKYHILR_ 0 0 0 L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense L1MA5_dup107|chr1:113739453-113740746:-|1.3493835914550465|0.0363311381225992|5.21|151.0|46|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 437.256904 1308.74888 -0.32813 -0.00014348 1.5922 0.00069622 1.2641 0.00055274 437.2576929674983 91.062 0.248 94.463 94.289 94.537 3.401 0.03634 0.00045908 NaN 0.77653 46 33 2 NaN NaN NaN NaN 0 NaN NaN 0 138050 27259 9866 17107 17116 0.10685697332905875 MHVLQCET 8 Unmodified _MHVLQCET_ 0 0 0 REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|47|1|anti-sense REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_2 6 480.71661376953125 2 480.717513 959.420473 NaN NaN NaN NaN NaN NaN NaN 118.1 1 121.76 121.26 122.26 3.6627 0 0 0 0.40738 1 28308 28308 0.79363 0 1 + 27260 30796 17108 17117 31670 31670 -0.06086080640113778 MHWLTSSG 8 Unmodified _MHWLTSSG_ 0 0 0 REV__L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|63|2|anti-sense REV__L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|63|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 459.71063232421875 2 459.710545 917.406537 0.17787 8.1768E-05 0.18934 8.7043E-05 0.36721 0.00016881 459.71052939206857 96.388 0.98718 100.17 99.751 100.74 3.7804 339 130 3 0 0 0 0.82752 1 22906 22906 5.2307 0.47466 1 6441500 + 27261 26291 17109 17118 31671 31671 -0.05546990076879865 MHWWARIIKKY 11 Unmodified _MHWWARIIKKY_ 0 0 0 REV__AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|2|1|sense REV__AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.28302001953125 3 511.283341 1530.82819 0.20037 0.00010245 0.91096 0.00046576 1.1113 0.00056821 511.61826744108924 35.433 0.55084 39.105 38.962 39.513 3.6721 76 56 3 0 0 0 0.60697 1 5765 5765 5.0475 2.2042 1 181300 + 27262 17145 17110 17119 31672 31672 0.08401344287040047 MHWWARIIKKY 11 Unmodified _MHWWARIIKKY_ 0 0 0 REV__AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|2|1|sense REV__AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 511.283341 1530.82819 0.27611 0.00014117 1.1127 0.00056891 1.3888 0.00071009 511.28381252830167 35.818 0.26041 39.328 39.16 39.421 3.5101 0.087276 0.00015375 NaN 5.0475 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 102050 + 27263 17145 17110 17119 0.08401344287040047 MHYIFFMH 8 Unmodified _MHYIFFMH_ 0 0 0 L1MA4_dup692|chr1:246092401-246093659:+|2.576191084680054|0.0176731422088223|7.19|151.0|75|3|anti-sense L1MA4_dup692|chr1:246092401-246093659:+|2.576191084680054|0.0176731422088223|7.19|151.0|75|3|anti-sense L1MA4_dup692|chr1:246092401-246093659:+|2.576191084680054|0.0176731422088223|7.19|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_1 2 563.2554931640625 2 563.254065 1124.49358 NaN NaN NaN NaN NaN NaN NaN 34.727 1 38.413 37.913 38.913 3.6859 0 0 0 0.40738 1 6286 6286 0.79363 0.10326 1 27264 9723 17111 17120 31673 31673 -0.06368907126807244 MICIFSFPAF 10 Unmodified _MICIFSFPAF_ 0 0 0 L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|30|2|anti-sense L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|30|2|anti-sense L1ME3D_dup1937|chr7:149480735-149481229:+|1.4972198668735612|0.2199481424324391|2.77|151.0|30|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 588.7879028320312 2 588.285031 1174.55551 0.48303 0.00028416 -0.78196 -0.00046002 -0.29893 -0.00017586 588.2844329702236 69.279 0.47807 72.8 72.477 72.956 3.5216 57 37 2 0 0 0 0.51565 1 16039 16039 10.074 0 1 138150 27265 12790 17112 17121 31674 31674 -0.024786004983525345 MICINDWK 8 Unmodified _MICINDWK_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|8|1|sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 511.7434387207031 2 511.743531 1021.47251 NaN NaN NaN NaN NaN NaN NaN 60.767 1 63.932 63.432 64.432 3.1651 0 0 0 0.40738 1 14290 14290 0.79363 0 1 + 27266 25732 17113 17122 31675 31675 -0.03736917226353853 MICSKKKLR 9 Unmodified _MICSKKKLR_ 0 0 0 REV__L1MC_dup3267|chr7:37114589-37115898:+|1.2016156260747857|0.0084295410968935|7.16|151.0|28|2|sense REV__L1MC_dup3267|chr7:37114589-37115898:+|1.2016156260747857|0.0084295410968935|7.16|151.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 553.8304443359375 2 553.830472 1105.64639 NaN NaN NaN NaN NaN NaN NaN 81.8 1 85.375 84.875 85.875 3.5753 0 0 0 0.39428 1 19516 19516 2.0598 0 1 + 27267 26465 17114 17123 31676 31676 0.097792882697604 MIDRIKRHLK 10 Unmodified _MIDRIKRHLK_ 0 0 0 nc|ENSG00000196290|Q9GZT8-2|NIF3L1;ENSG00000196290|ENST00000409020|NIF3L1 nc|ENSG00000196290|Q9GZT8-2|NIF3L1 nc|ENSG00000196290|Q9GZT8-2|NIF3L1 MULTI-MSMS UPN48_class_I_Rep_2 6 437.60205078125 3 437.267691 1308.78124 0.10088 4.411E-05 -0.66503 -0.0002908 -0.56416 -0.00024669 437.26718877345627 51.196 1.3606 54.864 53.812 55.173 3.6679 196 86 3 0 0 0 0.56317 1 10504 10504 1.5923 0.48253 1 400340 27268 5294 17115 17124 31677 31677 0.13920484735899663 MIEDLVDLLL 10 Unmodified _MIEDLVDLLL_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2;ENST00000476314.1_1_20:58494499-58496505:-|nuORF ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MSMS UPN47_class_I_Rep_3 4 587.326416015625 2 587.325408 1172.63626 NaN NaN NaN NaN NaN NaN NaN 64.008 1 67.182 66.682 67.682 3.1741 0 0 0 0.53105 1 15278 15278 1.4819 0.28856 1 27269 5279 17116 17125 31678 31678 0.05684959025552416 MIEIVLRH 8 Unmodified _MIEIVLRH_ 0 0 0 REV__ENST00000514807.5_1_4:26322415-26364126:+|nuORF REV__ENST00000514807.5_1_4:26322415-26364126:+|nuORF MSMS UPN48_class_I_Rep_3 7 505.7938232421875 2 505.794412 1009.57427 NaN NaN NaN NaN NaN NaN NaN 76.243 1 79.827 79.327 80.327 3.5831 0 0 0 0.39996 1 17952 17952 7.9102 3.1541 1 + 27270 22760 17117 17126 31679 31679 0.06986697187721802 MIFFRIIYV 9 Unmodified _MIFFRIIYV_ 0 0 0 REV__L1ME4b_dup15744|chr13:28148502-28148932:-|2.353528289483587|0.0073857127315981|8.32|151.0|22|1|anti-sense REV__L1ME4b_dup15744|chr13:28148502-28148932:-|2.353528289483587|0.0073857127315981|8.32|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 601.3435668945312 2 601.343738 1200.67292 NaN NaN NaN NaN NaN NaN NaN 83.197 1 86.903 86.403 87.403 3.7066 0 0 0 0.39428 1 19721 19721 2.0598 0.21551 1 + 27271 28263 17118 17127 31680 31680 0.08061300432768803 MIFHGVCI 8 Unmodified _MIFHGVCI_ 0 0 0 L1PREC2_dup2587|chr5:119257979-119259444:+|1.130758695811624|0.0335305689736534|5.08|151.0|53|1|anti-sense L1PREC2_dup2587|chr5:119257979-119259444:+|1.130758695811624|0.0335305689736534|5.08|151.0|53|1|anti-sense L1PREC2_dup2587|chr5:119257979-119259444:+|1.130758695811624|0.0335305689736534|5.08|151.0|53|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 460.7827453613281 2 460.230059 918.445565 0.20256 9.3224E-05 -0.98167 -0.0004518 -0.77912 -0.00035857 460.22970436577845 109.21 0.18673 112.82 112.7 112.89 3.6046 32 20 2 0 0 0 0.72333 1 26901 26901 2.8892 0 1 739300 27272 15439 17119 17128 31681 31681 -0.016919810468721153 MIFHGVCI 8 Unmodified _MIFHGVCI_ 0 0 0 L1PREC2_dup2587|chr5:119257979-119259444:+|1.130758695811624|0.0335305689736534|5.08|151.0|53|1|anti-sense L1PREC2_dup2587|chr5:119257979-119259444:+|1.130758695811624|0.0335305689736534|5.08|151.0|53|1|anti-sense L1PREC2_dup2587|chr5:119257979-119259444:+|1.130758695811624|0.0335305689736534|5.08|151.0|53|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 460.230059 918.445565 0.042387 1.9508E-05 -1.0649 -0.00049008 -1.0225 -0.00047058 460.2294991106178 109.19 0.13239 112.82 112.74 112.87 3.6321 -0.034257 2.7125E-05 NaN 2.8892 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 862840 27273 15439 17119 17128 -0.016919810468721153 MIFKLILP 8 Unmodified _MIFKLILP_ 0 0 0 HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|96|2|anti-sense HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|96|2|anti-sense HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|96|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.80889892578125 2 487.808999 973.603446 0.24051 0.00011732 -0.39386 -0.00019213 -0.15335 -7.4804E-05 487.80879787464715 93.74 0.27663 97.631 97.581 97.858 3.8914 51 37 2 0 0 0 0.82752 1 22216 22216 0.79363 0 1 84352 27274 7791 17120 17129 31682 31682 0.11558841484009008 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8561401367188 2 597.354114 1192.69367 0.57412 0.00034295 1.5705 0.00093815 2.1446 0.0012811 597.8557856198315 86.686 0.11221 86.686 86.662 86.775 0 16 11 2 0 0 0 0.48846 1 20750 20750 1.8442 0 1 374690 27275 9183 17121 17130 31683 31683 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8563232421875 2 597.354114 1192.69367 0.57508 0.00034353 1.7884 0.0010683 2.3635 0.0014118 597.8556127195611 86.895 0.28351 86.895 86.765 87.049 0 59 27 3 0 0 0 0.48846 1 20801 20801 1.8442 0.77278 1 253820 27276 9183 17121 17130 31684 31684 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 597.35693359375 2 597.354114 1192.69367 NaN NaN NaN NaN NaN NaN NaN 84.566 1 84.566 84.066 85.066 0 0 0 0 0.39518 1 20126 20126 1.8442 0.36234 1 27277 9183 17121 17130 31685 31685 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 597.3568115234375 2 597.354114 1192.69367 NaN NaN NaN NaN NaN NaN NaN 84.791 1 84.791 84.291 85.291 0 0 0 0 0.39518 1 20194 20194 1.8442 0.36234 1 27278 9183 17121 17130 31686 31686 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.8565673828125 2 597.354114 1192.69367 0.45339 0.00027083 2.026 0.0012103 2.4794 0.0014811 597.8559760840483 83.638 0.18918 87.204 87.149 87.338 3.5655 38 23 2 0 0 0 0.48846 1 20951 20951 1.8442 0.19162 1 78862 27279 9183 17121 17130 31687 31687 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.8574829101562 2 597.354114 1192.69367 0.45448 0.00027149 2.2917 0.001369 2.7462 0.0016405 597.8559762483337 83.801 0.057083 87.367 87.338 87.395 3.5655 13 6 3 0 0 0 0.48846 1 20969 20969 1.8442 0.36234 1 116800 27280 9183 17121 17130 31688 31688 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 597.3571166992188 2 597.354114 1192.69367 NaN NaN NaN NaN NaN NaN NaN 81.087 1 84.575 84.075 85.075 3.4874 0 0 0 0.39518 1 20224 20224 1.8442 0.36234 1 27281 9183 17121 17130 31689 31689 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 597.3582153320312 2 597.354114 1192.69367 NaN NaN NaN NaN NaN NaN NaN 81.206 1 84.59 84.09 85.09 3.3839 0 0 0 0.39518 1 20222 20222 1.8442 0.36234 1 27282 9183 17121 17130 31690 31690 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8564453125 2 597.354114 1192.69367 0.48252 0.00028824 2.2878 0.0013666 2.7703 0.0016548 597.8561968757829 83.188 0.39263 86.869 86.649 87.042 3.6814 72 48 2 0 0 0 0.48846 1 19772 19772 1.8442 0.36234 1 93628 27283 9183 17121 17130 31691 31691 0.1050356754076347 MIFKLMRVR 9 Unmodified _MIFKLMRVR_ 0 0 0 L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense L1M5_dup47523|chr17:2645912-2646419:+|1.3642205692391476|0.0240023648007011|5.83|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.856689453125 2 597.354114 1192.69367 0.48524 0.00028986 3.5005 0.002091 3.9857 0.0023809 597.3571225293628 95.488 0.11678 99.269 99.197 99.314 3.7804 18 15 2 0 0 0 0.48846 1 22702 22702 1.8442 1.3195 1 72783 27284 9183 17121 17130 31692 31692 0.1050356754076347 MIFLPNYE 8 Unmodified _MIFLPNYE_ 0 0 0 MER41-int_dup422|chr4:139711796-139713093:-|2.729023724985284|0.1457963923232912|4.23|151.0|51|1|anti-sense;MER41-int_dup1377|chr14:102856718-102858148:-|2.2203923796671807|0.0169406985780838|7.03|151.0|71|2|anti-sense MER41-int_dup422|chr4:139711796-139713093:-|2.729023724985284|0.1457963923232912|4.23|151.0|51|1|anti-sense MER41-int_dup422|chr4:139711796-139713093:-|2.729023724985284|0.1457963923232912|4.23|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 513.7537231445312 2 513.751879 1025.4892 NaN NaN NaN NaN NaN NaN NaN 22.435 1 25.785 25.285 26.285 3.3503 0 0 0 0.4044 1 2684 2684 4.756 0 1 27285 15956 17122 17131 31693 31693 -0.022520930687505825 MIFMYYLY 8 Unmodified _MIFMYYLY_ 0 0 0 ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron MSMS UPN47_class_I_Rep_1 2 572.2661743164062 2 572.266307 1142.51806 NaN NaN NaN NaN NaN NaN NaN 40.553 1 44.225 43.725 44.725 3.6719 0 0 0 0.39167 1 8054 8054 11.114 0 1 27286 2608 17123 17132 31694 31694 -0.04749691763959163 MIFMYYLY 8 Unmodified _MIFMYYLY_ 0 0 0 ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron MSMS UPN47_class_I_Rep_1 2 572.2662353515625 2 572.266307 1142.51806 NaN NaN NaN NaN NaN NaN NaN 40.799 1 44.471 43.971 44.971 3.6719 0 0 0 0.4032 1 8129 8129 6.3541 0 1 27287 2608 17123 17132 31695 31695 -0.04749691763959163 MIFMYYLY 8 Unmodified _MIFMYYLY_ 0 0 0 ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron MSMS UPN47_class_I_Rep_2 3 572.265625 2 572.266307 1142.51806 NaN NaN NaN NaN NaN NaN NaN 41.117 1 44.483 43.983 44.983 3.3655 0 0 0 0.39167 1 8254 8254 11.114 0 1 27288 2608 17123 17132 31696 31696 -0.04749691763959163 MIFMYYLY 8 Unmodified _MIFMYYLY_ 0 0 0 ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron ENSG00000128908.17,INO80,chr15,-,I4.1,41092183,41095600|27|5.46|3|intron MSMS UPN47_class_I_Rep_3 4 572.2669067382812 2 572.266307 1142.51806 NaN NaN NaN NaN NaN NaN NaN 41.179 1 44.416 43.916 44.916 3.2372 0 0 0 0.39167 1 8329 8329 11.114 0 1 27289 2608 17123 17132 31697 31697 -0.04749691763959163 MIFTFSATVF 10 Unmodified _MIFTFSATVF_ 0 0 0 REV__L1MB8_dup10236|chr10:70416951-70417517:+|1.077704553462141|0.1838280800460247|2.55|151.0|44|3|anti-sense REV__L1MB8_dup10236|chr10:70416951-70417517:+|1.077704553462141|0.1838280800460247|2.55|151.0|44|3|anti-sense MSMS UPN48_class_I_Rep_1 5 582.2937622070312 2 582.293911 1162.57327 NaN NaN NaN NaN NaN NaN NaN 77.613 1 81.135 80.635 81.635 3.5221 0 0 0 0.53105 1 18480 18480 3.2813 0 1 + 27290 26330 17124 17133 31698 31698 -0.0015156197184751363 MIFVLVLLD 9 Unmodified _MIFVLVLLD_ 0 0 0 REV__L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|52|2|anti-sense REV__L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|52|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.8167724609375 2 531.817021 1061.61949 0.33017 0.00017559 -0.23557 -0.00012528 0.0946 5.031E-05 531.8168248469084 83.351 0.21249 83.351 83.191 83.403 0 39 20 3 0 0 0 0.48846 1 19780 19780 1.8442 0 1 415960 + 27291 25205 17125 17134 31699 31699 0.09114502930242452 MIHALFQVA 9 Unmodified _MIHALFQVA_ 0 0 0 LTR33_dup2239|chr4:48116393-48116862:-|1.3196809748871503|0.0441758545149457|4.9|151.0|5|2|sense LTR33_dup2239|chr4:48116393-48116862:-|1.3196809748871503|0.0441758545149457|4.9|151.0|5|2|sense LTR33_dup2239|chr4:48116393-48116862:-|1.3196809748871503|0.0441758545149457|4.9|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 515.2823486328125 2 515.281137 1028.54772 NaN NaN NaN NaN NaN NaN NaN 65.061 1 68.54 68.04 69.04 3.4792 0 0 0 0.38639 1 14760 14760 3.9444 1.3669 1 27292 15619 17126 17135 31700 31700 0.03459008296408683 MIHFLVQV 8 Unmodified _MIHFLVQV_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MSMS UPN47_class_I_Rep_1 2 493.7796936035156 2 493.778231 985.541908 NaN NaN NaN NaN NaN NaN NaN 66.694 1 70.052 69.552 70.552 3.3576 0 0 0 0.39819 1 15992 15992 8.5933 0.68312 1 + 27293 19669 17127 17136 31701 31701 0.04855909784737378 MIIAFSYVDG 10 Unmodified _MIIAFSYVDG_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MSMS UPN47_class_I_Rep_2 3 558.2781372070312 2 558.275718 1114.53688 NaN NaN NaN NaN NaN NaN NaN 34.832 1 38.257 37.757 38.757 3.4253 0 0 0 0.53105 1 6347 6347 1.4819 0.28856 1 + 27294 18180 17128 17137 31702 31702 -0.01580438868541023 MIIAILLFW 9 Unmodified _MIIAILLFW_ 0 0 0 L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense MSMS UPN46_class_I_Rep_3 1 560.336181640625 2 560.335381 1118.65621 NaN NaN NaN NaN NaN NaN NaN 104.92 1 104.92 104.42 105.42 0 0 0 0 0.40038 1 25601 25601 0.6015 0 1 27295 10922 17129 17138 31703 31703 0.10162799546833412 MIIHVFPP 8 Unmodified _MIIHVFPP_ 0 0 0 REV__ENSG00000176925|ENST00000322110|OR51F2 REV__ENSG00000176925|ENST00000322110|OR51F2 MSMS UPN47_class_I_Rep_3 4 477.32452392578125 2 477.267499 952.520445 NaN NaN NaN NaN NaN NaN NaN 97.031 1 100.44 99.945 100.94 3.414 0 0 0 0.40738 1 24057 24057 0.79363 0 1 + 27296 20602 17130 17139 31704 31704 0.0422852475601303 MIISFHMLI 9 Unmodified _MIISFHMLI_ 0 0 0 L1MC1_dup10830|chr14:73378038-73379040:+|1.370789381649719|0.0197691024642616|6.12|151.0|65|3|anti-sense L1MC1_dup10830|chr14:73378038-73379040:+|1.370789381649719|0.0197691024642616|6.12|151.0|65|3|anti-sense L1MC1_dup10830|chr14:73378038-73379040:+|1.370789381649719|0.0197691024642616|6.12|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.2855834960938 2 552.800848 1103.58714 0.44649 0.00024682 -0.99433 -0.00054967 -0.54784 -0.00030285 552.8003597831079 61.822 0.23608 65.081 64.99 65.226 3.2594 25 16 2 0 0 0 0.33654 1 14575 14575 11.64 0.14559 1 62260 27297 11082 17131 17140 31705 31705 0.039493922556175676 MIISFHMLI 9 Unmodified _MIISFHMLI_ 0 0 0 L1MC1_dup10830|chr14:73378038-73379040:+|1.370789381649719|0.0197691024642616|6.12|151.0|65|3|anti-sense L1MC1_dup10830|chr14:73378038-73379040:+|1.370789381649719|0.0197691024642616|6.12|151.0|65|3|anti-sense L1MC1_dup10830|chr14:73378038-73379040:+|1.370789381649719|0.0197691024642616|6.12|151.0|65|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 553.2855834960938 2 552.800848 1103.58714 0.44649 0.00024682 -0.99433 -0.00054967 -0.54784 -0.00030285 552.8003597831079 61.822 0.23608 65.081 64.99 65.226 3.2594 25 16 2 0 0 0 0.11598 1 14575 14575 11.64 0.14559 1 62260 27298 11082 17131 17140 31706 31706 0.039493922556175676 MIIYKYIFVII 11 Unmodified _MIIYKYIFVII_ 0 0 0 REV__L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|60|2|anti-sense REV__L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|60|2|anti-sense MSMS UPN48_class_I_Rep_3 7 472.6177978515625 3 472.617216 1414.82982 NaN NaN NaN NaN NaN NaN NaN 93.365 1 97.256 96.756 97.756 3.8914 0 0 0 0.38417 1 22124 22124 1.4551 0.12547 1 + 27299 28117 17132 17141 31707 31707 0.13899540532429455 MIKCPRLI 8 Unmodified _MIKCPRLI_ 0 0 0 L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|31|1|sense L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|31|1|sense L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|31|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.287841796875 2 487.287908 972.561264 -0.31876 -0.00015533 -0.66672 -0.00032488 -0.98547 -0.00048021 487.28765122908726 26.348 0.32826 30.11 29.945 30.273 3.7624 41 30 2 0 0 0 0.82752 1 3782 3782 2.5775 2.5775 1 41899 27300 11689 17133 17142 31708 31708 0.07388542803983 MIKKRTDE 8 Unmodified _MIKKRTDE_ 0 0 0 REV__nc|ENSG00000100003|O76054-5|SEC14L2 REV__nc|ENSG00000100003|O76054-5|SEC14L2 MSMS UPN48_class_I_Rep_1 5 510.77825927734375 2 510.778959 1019.54336 NaN NaN NaN NaN NaN NaN NaN 26.033 1 29.6 29.1 30.1 3.5667 0 0 0 0.40643 1 3129 3129 2.0598 0 1 + 27301 18083 17134 17143 31709 31709 0.034374990828155205 MILAVRFV 8 Unmodified _MILAVRFV_ 0 0 0 L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.791748046875 2 474.788598 947.562644 0.25234 0.00011981 3.0997 0.0014717 3.352 0.0015915 474.7900752357317 107.95 0.79926 107.95 107.88 108.68 0 108 81 2 0 0 0 0.82752 5 26333 26333;26341;26374;26396;26442 19.439 4.8573 1 120210000 27302 9260 17135 17144 31710;31711;31712;31713;31714 31710 0.08676500164392564 MILAVRFV 8 Unmodified _MILAVRFV_ 0 0 0 L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|171|1|anti-sense MSMS UPN47_class_I_Rep_2 3 474.7904357910156 2 474.788598 947.562644 NaN NaN NaN NaN NaN NaN NaN 110.94 1 114.47 113.97 114.97 3.5271 0 0 0 0.39819 1 27004 27004 8.5933 3.3626 1 27303 9260 17135 17144 31715 31715 0.08676500164392564 MILHEYDLL 9 Unmodified _MILHEYDLL_ 0 0 0 nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10 nc|ENSG00000163491|Q6ZWH5-4|NEK10 nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-MSMS UPN48_class_I_Rep_1 5 573.7969360351562 2 573.796817 1145.57908 0.42752 0.00024531 0.1556 8.9281E-05 0.58311 0.00033459 573.7969067736025 53.047 0.60083 56.566 56.406 57.007 3.5192 60 41 2 0 0 0 0.46869 1 11187 11187 3.9444 0.94915 1 114750 27304 4009 17136 17145 31716 31716 0.012115365398130962 MILHEYDLL 9 Unmodified _MILHEYDLL_ 0 0 0 nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10 nc|ENSG00000163491|Q6ZWH5-4|NEK10 nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-MSMS UPN48_class_I_Rep_2 6 573.79833984375 2 573.796817 1145.57908 0.53723 0.00030826 -0.032914 -1.8886E-05 0.50432 0.00028938 573.7968285698543 53.105 0.71517 56.715 56.316 57.031 3.6098 59 44 2 0 0 0 0.41259 1 11042 11042 7.2892 1.5574 1 95319 27305 4009 17136 17145 31717 31717 0.012115365398130962 MILIVKGW 8 Unmodified _MILIVKGW_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|25|2|sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|25|2|sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 480.2804870605469 2 480.290974 958.567395 NaN NaN NaN NaN NaN NaN NaN 20.845 1 24.489 23.989 24.989 3.6436 0 0 0 0.40746 1 2166 2166 0.69038 0 1 27306 13859 17137 17146 31718 31718 0.08645384307146742 MILLPILHLKK 11 Unmodified _MILLPILHLKK_ 0 0 0 L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.29217529296875 3 440.292955 1317.85703 0.031141 1.3711E-05 -0.80278 -0.00035346 -0.77164 -0.00033975 440.29226395206626 55.454 1.6877 58.962 58.184 59.871 3.5082 396 116 4 0 0 0 0.68478 1 11869 11869 0.094841 0.094841 1 656270 27307 9037 17138 17147 31719 31719 0.21082068863461245 MILLPILHLKK 11 Unmodified _MILLPILHLKK_ 0 0 0 L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.292236328125 3 440.292955 1317.85703 0.077414 3.4085E-05 -1.0007 -0.00044058 -0.92324 -0.0004065 440.2922029404469 57.637 1.8919 61.131 60.162 62.054 3.4942 305 144 4 0 0 0 0.68478 2 12464 12464;12633 0.094841 0 1 870610 27308 9037 17138 17147 31720;31721 31720 0.21082068863461245 MILLPILHLKK 11 Unmodified _MILLPILHLKK_ 0 0 0 L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.292236328125 3 440.292955 1317.85703 0.024226 1.0666E-05 -0.96151 -0.00042334 -0.93728 -0.00041268 440.2922697091301 55.065 2.5065 58.634 57.45 59.956 3.5694 410 171 4 0 0 0 0.68478 3 11555 11555;11685;11726 0.094841 0.094841 1 1089800 27309 9037 17138 17147 31722;31723;31724 31722 0.21082068863461245 MILVANKVDLM 11 Unmodified _MILVANKVDLM_ 0 0 0 nc|ENSG00000158186|O14807-2|MRAS;ENSG00000158186|ENST00000423968|MRAS nc|ENSG00000158186|O14807-2|MRAS nc|ENSG00000158186|O14807-2|MRAS MSMS UPN46_class_I_Rep_3 1 623.848388671875 2 623.848527 1245.6825 NaN NaN NaN NaN NaN NaN NaN 100.02 1 100.02 99.518 100.52 0 0 0 0 0.38417 1 24378 24378 1.1933 0.59184 1 27310 3790 17139 17148 31725 31725 0.06948700655971152 MIMVKHIN 8 Unmodified _MIMVKHIN_ 0 0 0 REV__LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense REV__LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense MSMS UPN47_class_I_Rep_2 3 493.2691345214844 2 493.269716 984.524878 NaN NaN NaN NaN NaN NaN NaN 28.517 1 32.015 31.515 32.515 3.4986 0 0 0 0.40738 1 4436 4436 0.79363 0 1 + 27311 30778 17140 17149 31726 31726 0.03199665907277449 MIMVKHIN 8 Unmodified _MIMVKHIN_ 0 0 0 REV__LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense REV__LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense MSMS UPN47_class_I_Rep_2 3 493.2687072753906 2 493.269716 984.524878 NaN NaN NaN NaN NaN NaN NaN 28.834 1 32.333 31.833 32.833 3.4986 0 0 0 0.40738 1 4531 4531 0.79363 0 1 + 27312 30778 17140 17149 31727 31727 0.03199665907277449 MIMVKHIN 8 Unmodified _MIMVKHIN_ 0 0 0 REV__LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense REV__LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.2691955566406 2 493.269716 984.524878 -0.43616 -0.00021514 -0.96692 -0.00047695 -1.4031 -0.0006921 493.2692315895791 28.862 0.49372 32.196 31.964 32.458 3.3337 51 39 2 0 0 0 0.82752 1 4660 4660 0.79363 0.10326 1 55614 + 27313 30778 17140 17149 31728 31728 0.03199665907277449 MIPCFCCT 8 Unmodified _MIPCFCCT_ 0 0 0 Tigger3a_dup3861|chr12:32741632-32741944:+|1.3973985069985784|0.2709701423085115|2.37|151.0|2|1|sense Tigger3a_dup3861|chr12:32741632-32741944:+|1.3973985069985784|0.2709701423085115|2.37|151.0|2|1|sense Tigger3a_dup3861|chr12:32741632-32741944:+|1.3973985069985784|0.2709701423085115|2.37|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 459.17205810546875 2 459.173038 916.331523 NaN NaN NaN NaN NaN NaN NaN 33.6 1 37.04 36.54 37.54 3.4398 0 0 0 0.40738 1 5973 5973 0.79363 0.10326 1 27314 33361 17141 17150 31729 31729 -0.1299895519563279 MIPCFCCT 8 Unmodified _MIPCFCCT_ 0 0 0 Tigger3a_dup3861|chr12:32741632-32741944:+|1.3973985069985784|0.2709701423085115|2.37|151.0|2|1|sense Tigger3a_dup3861|chr12:32741632-32741944:+|1.3973985069985784|0.2709701423085115|2.37|151.0|2|1|sense Tigger3a_dup3861|chr12:32741632-32741944:+|1.3973985069985784|0.2709701423085115|2.37|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 459.1719055175781 2 459.173038 916.331523 NaN NaN NaN NaN NaN NaN NaN 39.946 1 43.183 42.683 43.683 3.2372 0 0 0 0.40738 1 7949 7949 0.79363 0.10326 1 27315 33361 17141 17150 31730 31730 -0.1299895519563279 MIPNHGLAY 9 Unmodified _MIPNHGLAY_ 0 0 0 REV__L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|49|3|anti-sense REV__L1MC3_dup912|chr2:24544807-24545589:+|1.5219438429102323|0.0153954440789886|6.63|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.2580261230469 2 508.25512 1014.49569 0.29077 0.00014779 1.4239 0.00072368 1.7146 0.00087147 508.75612744779716 62.983 0.40752 66.492 66.314 66.722 3.5091 61 29 3 0 0 0 0.32219 1 14079 14079 12.532 3.9383 1 170740 + 27316 26790 17142 17151 31731 31731 -0.010981551173813386 MIQKWRFT 8 Unmodified _MIQKWRFT_ 0 0 0 Tigger15a_dup4403|chr17:58340373-58340495:+|1.9837085679641664|0.0087311537842296|7.83|151.0|2|2|sense Tigger15a_dup4403|chr17:58340373-58340495:+|1.9837085679641664|0.0087311537842296|7.83|151.0|2|2|sense Tigger15a_dup4403|chr17:58340373-58340495:+|1.9837085679641664|0.0087311537842296|7.83|151.0|2|2|sense MSMS UPN48_class_I_Rep_2 6 555.27880859375 2 555.299862 1108.58517 NaN NaN NaN NaN NaN NaN NaN 71.851 1 75.401 74.901 75.901 3.5505 0 0 0 0.40364 1 16790 16790 5.7604 0.52976 1 27317 33241 17143 17152 31732 31732 0.035220995619965834 MIQQFQYWV 9 Unmodified _MIQQFQYWV_ 0 0 0 L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|16|1|sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|16|1|sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 621.8031005859375 2 621.802434 1241.59032 NaN NaN NaN NaN NaN NaN NaN 45.57 1 49.328 48.828 49.828 3.7579 0 0 0 0.39518 1 8812 8812 1.8442 0 1 27318 9895 17144 17153 31733 31733 -0.020816413660440958 MIQVHYIYW 9 Unmodified _MIQVHYIYW_ 0 0 0 MER1A_dup2124|chr11:16741557-16742027:+|2.1958219189378445|0.4434884890112507|2.31|151.0|22|2|anti-sense MER1A_dup2124|chr11:16741557-16742027:+|2.1958219189378445|0.4434884890112507|2.31|151.0|22|2|anti-sense MER1A_dup2124|chr11:16741557-16742027:+|2.1958219189378445|0.4434884890112507|2.31|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_1 5 626.8123168945312 2 626.812802 1251.61105 NaN NaN NaN NaN NaN NaN NaN 32.841 1 36.368 35.868 36.868 3.5266 0 0 0 0.4007 1 5044 5044 0.52476 0 1 27319 15803 17145 17154 31734 31734 -0.004690509863849002 MIRFRLYIFW 10 Unmodified _MIRFRLYIFW_ 0 0 0 L1MC4a_dup6403|chr10:74993262-74994500:-|2.536622892478328|0.0463746061095414|5.77|151.0|80|3|anti-sense L1MC4a_dup6403|chr10:74993262-74994500:-|2.536622892478328|0.0463746061095414|5.77|151.0|80|3|anti-sense L1MC4a_dup6403|chr10:74993262-74994500:-|2.536622892478328|0.0463746061095414|5.77|151.0|80|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.26861572265625 3 482.268921 1443.78493 -0.51697 -0.00024932 0.26685 0.0001287 -0.25011 -0.00012062 482.26901970846694 30.276 0.67966 33.587 33.258 33.937 3.3116 108 55 3 0 0 0 0.5652 1 5018 5018 0.15932 0 1 93484 27320 11598 17146 17155 31735 31735 0.08079154509755426 MIRHHICAM 9 Unmodified _MIRHHICAM_ 0 0 0 REV__L1MC1_dup12851|chr22:40089536-40090650:-|3.162609699459533|0.0348488093666334|6.5|151.0|46|1|anti-sense REV__L1MC1_dup12851|chr22:40089536-40090650:-|3.162609699459533|0.0348488093666334|6.5|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_2 3 556.2865600585938 2 556.269724 1110.52489 NaN NaN NaN NaN NaN NaN NaN 58.787 1 62.068 61.568 62.568 3.2818 0 0 0 0.38639 1 13635 13635 3.9444 1.0552 1 + 27321 26526 17147 17156 31736 31736 -0.0259465736439779 MIVFQQMVL 9 Unmodified _MIVFQQMVL_ 0 0 0 L1MD_dup3384|chr6:149671434-149671888:-|1.1151269309956109|0.0417698738313173|4.74|151.0|19|3|sense L1MD_dup3384|chr6:149671434-149671888:-|1.1151269309956109|0.0417698738313173|4.74|151.0|19|3|sense L1MD_dup3384|chr6:149671434-149671888:-|1.1151269309956109|0.0417698738313173|4.74|151.0|19|3|sense MSMS UPN48_class_I_Rep_3 7 554.7993774414062 2 554.798306 1107.58206 NaN NaN NaN NaN NaN NaN NaN 96.81 1 100.72 100.22 101.22 3.9084 0 0 0 0.39326 1 22948 22948 2.3027 0.4585 1 27322 11876 17148 17157 31737 31737 0.032570883929793126 MIWFSVCLL 9 Unmodified _MIWFSVCLL_ 0 0 0 L1PA5_dup2468|chr4:48757165-48759243:+|1.128947268364918|0.0160731169687232|6.13|151.0|81|1|anti-sense;L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|319|3|anti-sense;L1PA3_dup1937|chr3:97904738-97910773:-|1.9306026000164596|0.4417639031982622|2.13|151.0|323|3|anti-sense;L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|258|2|anti-sense;L1PA7_dup9237|chr10:48348883-48351272:+|5.6403655431850135|0.1029090943151682|5.78|151.0|136|3|anti-sense L1PA5_dup2468|chr4:48757165-48759243:+|1.128947268364918|0.0160731169687232|6.13|151.0|81|1|anti-sense L1PA5_dup2468|chr4:48757165-48759243:+|1.128947268364918|0.0160731169687232|6.13|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_1 2 556.3069458007812 2 556.287574 1110.56059 NaN NaN NaN NaN NaN NaN NaN 63.444 1 66.804 66.304 67.304 3.3595 0 0 0 0.36505 1 15011 15011 7.2892 0.93513 1 27323 14227 17149 17158 31738 31738 0.009737033642750248 MIWLAWLR 8 Unmodified _MIWLAWLR_ 0 0 0 REV__ENST00000392316.5_2_2:192227071-192228526:+|nuORF REV__ENST00000392316.5_2_2:192227071-192228526:+|nuORF MSMS UPN47_class_I_Rep_3 4 544.75244140625 2 544.807322 1087.60009 NaN NaN NaN NaN NaN NaN NaN 42.91 1 46.149 45.649 46.649 3.2394 0 0 0 0.40738 1 8852 8852 0.79363 0 1 + 27324 22088 17150 17159 31739 31739 0.0597959142999116 MIWLFICY 8 Unmodified _MIWLFICY_ 0 0 0 L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|210|2|anti-sense;L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|241|2|anti-sense L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|210|2|anti-sense L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|210|2|anti-sense MSMS UPN47_class_I_Rep_2 3 544.76953125 2 544.769017 1087.52348 NaN NaN NaN NaN NaN NaN NaN 24.294 1 27.76 27.26 28.26 3.4655 0 0 0 0.40581 1 3197 3197 2.8892 0 1 27325 14466 17151 17160 31740 31740 -0.016779681814796277 MIWLRRIT 8 Unmodified _MIWLRRIT_ 0 0 0 ENST00000439947.1_1_2:29084075-29084126:-|nuORF ENST00000439947.1_1_2:29084075-29084126:-|nuORF ENST00000439947.1_1_2:29084075-29084126:-|nuORF MSMS UPN47_class_I_Rep_3 4 544.8248901367188 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.473 1 92.866 92.366 93.366 3.3931 0 0 0 0.40738 1 22433 22433 0.79363 0 1 27326 6771 17152 17161 31741 31741 0.09214378832984949 MIWMLPNF 8 Unmodified _MIWMLPNF_ 0 0 0 ENST00000260323.15_1_15:54435829-54528631:+|nuORF ENST00000260323.15_1_15:54435829-54528631:+|nuORF ENST00000260323.15_1_15:54435829-54528631:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 526.2587280273438 2 526.258816 1050.50308 -0.19997 -0.00010524 0.74037 0.00038963 0.5404 0.00028439 526.2588717467681 34.906 0.065819 38.17 38.135 38.201 3.2639 5 3 2 0 0 0 0.72333 1 6406 6406 0.79363 0.10326 1 24096 27327 5949 17153 17162 31742 31742 -0.02015138841306907 MIWWKPPMG 9 Unmodified _MIWWKPPMG_ 0 0 0 L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|60|3|sense L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|60|3|sense L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|60|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.2865600585938 2 573.285366 1144.55618 0.34554 0.0001981 1.0186 0.00058392 1.3641 0.00078202 573.2860026214107 14.387 0.13452 17.921 17.83 17.965 3.5341 31 18 2 0 0 0 0.48643 1 408 408 2.0598 0.21551 1 16325 27328 8587 17154 17163 31743 31743 -0.010317610586298542 MIWYRPHK 8 Unmodified _MIWYRPHK_ 0 0 0 REV__ENST00000380636.1_1_X:12993391-12993475:+|nuORF REV__ENST00000380636.1_1_X:12993391-12993475:+|nuORF MSMS UPN46_class_I_Rep_3 1 566.2810668945312 2 565.800029 1129.5855 NaN NaN NaN NaN NaN NaN NaN 23.396 1 23.396 22.896 23.896 0 0 0 0 0.40738 1 2927 2927 0.79363 0 1 + 27329 22051 17155 17164 31744 31744 0.02589519281855246 MIYIPWVYN 9 Unmodified _MIYIPWVYN_ 0 0 0 L1PREC2_dup6985|chr17:62026502-62028560:+|1.781300216293855|0.077642694349908|4.52|151.0|100|2|anti-sense L1PREC2_dup6985|chr17:62026502-62028560:+|1.781300216293855|0.077642694349908|4.52|151.0|100|2|anti-sense L1PREC2_dup6985|chr17:62026502-62028560:+|1.781300216293855|0.077642694349908|4.52|151.0|100|2|anti-sense MSMS UPN48_class_I_Rep_1 5 599.80029296875 2 599.801903 1197.58925 NaN NaN NaN NaN NaN NaN NaN 33.622 1 37.142 36.642 37.642 3.5201 0 0 0 0.39428 1 5270 5270 2.0598 0 1 27330 15478 17156 17165 31745 31745 -0.0016385573494517303 MIYLCWGLI 9 Unmodified _MIYLCWGLI_ 0 0 0 REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|163|1|anti-sense REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|163|1|anti-sense MSMS UPN47_class_I_Rep_1 2 556.3072509765625 2 556.287574 1110.56059 NaN NaN NaN NaN NaN NaN NaN 63.589 1 66.948 66.448 67.448 3.3583 0 0 0 0.381 1 15056 15056 5.2307 0.47466 1 + 27331 23873 17157 17166 31746 31746 0.009737033642750248 MIYLCWGLI 9 Unmodified _MIYLCWGLI_ 0 0 0 REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|163|1|anti-sense REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|163|1|anti-sense MSMS UPN47_class_I_Rep_1 2 556.3070068359375 2 556.287574 1110.56059 NaN NaN NaN NaN NaN NaN NaN 63.729 1 67.084 66.584 67.584 3.3557 0 0 0 0.381 1 15097 15097 5.2307 0.90143 1 + 27332 23873 17157 17166 31747 31747 0.009737033642750248 MIYMFKKV 8 Unmodified _MIYMFKKV_ 0 0 0 L1MEc_dup15171|chr14:77523178-77524106:+|11.307387080295497|0.1661057615652292|6.09|151.0|24|2|sense L1MEc_dup15171|chr14:77523178-77524106:+|11.307387080295497|0.1661057615652292|6.09|151.0|24|2|sense L1MEc_dup15171|chr14:77523178-77524106:+|11.307387080295497|0.1661057615652292|6.09|151.0|24|2|sense MSMS UPN47_class_I_Rep_3 4 530.31201171875 2 530.290117 1058.56568 NaN NaN NaN NaN NaN NaN NaN 27.081 1 30.423 29.923 30.923 3.3422 0 0 0 0.40738 1 4060 4060 0.79363 0 1 27333 13031 17158 17167 31748 31748 0.03874007226909271 MIYSPLVIY 9 Unmodified _MIYSPLVIY_ 0 0 0 L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|235|2|anti-sense L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|235|2|anti-sense L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|235|2|anti-sense MSMS UPN47_class_I_Rep_1 2 549.8291015625 2 549.798829 1097.5831 NaN NaN NaN NaN NaN NaN NaN 57.74 1 61.177 60.677 61.677 3.437 0 0 0 0.26661 1 13280 13280 12.532 3.1841 1 27334 14244 17159 17168 31749 31749 0.03821626033550274 MKAIEPYKK 9 Unmodified _MKAIEPYKK_ 0 0 0 ENST00000560458.5_1_15:59970098-59981480:-|nuORF;ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2 ENST00000560458.5_1_15:59970098-59981480:-|nuORF ENST00000560458.5_1_15:59970098-59981480:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 553.8143310546875 2 554.315177 1106.6158 0.045344 2.5135E-05 0.43342 0.00024025 0.47876 0.00026538 554.3158866529878 42.308 0.075787 45.987 45.938 46.014 3.6792 6 4 2 0 0 0 0.12462 1 8588 8588 1.8442 0 1 31075 27335 3166 17160 17169 31750 31750 0.06675833156373301 MKARHKAP 8 Unmodified _MKARHKAP_ 0 0 0 REV__ENST00000543990.1_1_12:12510385-12588788:+|nuORF REV__ENST00000543990.1_1_12:12510385-12588788:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 470.0415344238281 2 469.771271 937.52799 0.1441 6.7696E-05 -0.27139 -0.00012749 -0.12729 -5.9795E-05 469.7711183006792 55.671 0.06744 59.179 59.129 59.196 3.5082 5 3 2 0 0 0 0.82752 1 11902 11902 0.69038 0 1 266620 + 27336 20132 17161 17170 31751 31751 0.05672677076290711 MKARHKAP 8 Unmodified _MKARHKAP_ 0 0 0 REV__ENST00000543990.1_1_12:12510385-12588788:+|nuORF REV__ENST00000543990.1_1_12:12510385-12588788:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 470.0415344238281 2 469.771271 937.52799 0.1441 6.7696E-05 -0.27139 -0.00012749 -0.12729 -5.9795E-05 469.7711183006792 55.671 0.06744 59.179 59.129 59.196 3.5082 5 3 2 0 0 0 0.72333 1 11902 11902 0.69038 0 1 266620 + 27337 20132 17161 17170 31752 31752 0.05672677076290711 MKCLFPPFHF 10 Unmodified _MKCLFPPFHF_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|241|3|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|241|3|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|241|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 633.8121948242188 2 633.811748 1265.60894 0.43669 0.00027678 -0.58547 -0.00037108 -0.14878 -9.43E-05 633.8112008711408 62.568 0.53328 65.824 65.575 66.108 3.2558 54 32 2 0 0 0 0.54466 1 14821 14821 6.2058 0 1 86969 27338 15305 17162 17171 31753 31753 -0.013238029958301922 MKEEMYEM 8 Unmodified _MKEEMYEM_ 0 0 0 REV__L1MEd_dup8847|chr6:149358674-149359891:-|1.2119058486029708|0.0367737180583201|5.04|151.0|45|3|sense REV__L1MEd_dup8847|chr6:149358674-149359891:-|1.2119058486029708|0.0367737180583201|5.04|151.0|45|3|sense MSMS UPN47_class_I_Rep_2 3 545.7161254882812 2 545.716321 1089.41809 NaN NaN NaN NaN NaN NaN NaN 119.11 1 122.59 122.09 123.09 3.4793 0 0 0 0.40746 1 29170 29170 0.69038 0 1 + 27339 28590 17163 17172 31754 31754 -0.12304297160085298 MKEHSAWTL 9 Unmodified _MKEHSAWTL_ 0 0 0 REV__ENSG00000163220|ENST00000368738|S100A9 REV__ENSG00000163220|ENST00000368738|S100A9 MSMS UPN48_class_I_Rep_2 6 551.7706298828125 2 551.771134 1101.52771 NaN NaN NaN NaN NaN NaN NaN 37.198 1 40.9 40.4 41.4 3.7021 0 0 0 0.38478 1 6340 6340 4.3292 0 1 + 27340 19971 17164 17173 31755 31755 -0.018987874342201394 MKERKRRRRSQ 11 Unmodified _MKERKRRRRSQ_ 0 0 0 REV__ENSG00000188089|ENST00000696112|PLA2G4E REV__ENSG00000188089|ENST00000696112|PLA2G4E MSMS UPN46_class_I_Rep_3 1 510.9687805175781 3 510.967186 1529.87973 NaN NaN NaN NaN NaN NaN NaN 101.9 1 101.9 101.4 102.4 0 0 0 0 0.38417 1 24865 24865 0.094841 0 1 + 27341 20954 17165 17174 31756 31756 0.13598481033659482 MKERKRRRRSQ 11 Unmodified _MKERKRRRRSQ_ 0 0 0 REV__ENSG00000188089|ENST00000696112|PLA2G4E REV__ENSG00000188089|ENST00000696112|PLA2G4E MSMS UPN47_class_I_Rep_1 2 510.9692077636719 3 510.967186 1529.87973 NaN NaN NaN NaN NaN NaN NaN 97.281 1 101.06 100.56 101.56 3.7767 0 0 0 0.38417 1 24109 24109 0.50596 0 1 + 27342 20954 17165 17174 31757 31757 0.13598481033659482 MKFHLWYF 8 Unmodified _MKFHLWYF_ 0 0 0 MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 586.7901000976562 2 586.291505 1170.56846 -0.029053 -1.7034E-05 0.0099381 5.8266E-06 -0.019115 -1.1207E-05 586.2910047852533 39.668 0.43803 43.335 43.235 43.673 3.6668 41 30 2 0 0 0 0.82752 1 7763 7763 9.3474 2.0582 1 81532 27343 16215 17166 17175 31758 31758 -0.010004013239267806 MKFHLWYF 8 Unmodified _MKFHLWYF_ 0 0 0 MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 586.29150390625 2 586.291505 1170.56846 NaN NaN NaN NaN NaN NaN NaN 40.224 1 43.595 43.095 44.095 3.3712 0 0 0 0.40364 1 7985 7985 5.7604 0 1 27344 16215 17166 17175 31759 31759 -0.010004013239267806 MKFHLWYF 8 Unmodified _MKFHLWYF_ 0 0 0 MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 586.2901000976562 2 586.291505 1170.56846 NaN NaN NaN NaN NaN NaN NaN 40.359 1 43.73 43.23 44.23 3.3712 0 0 0 0.40364 1 8027 8027 5.7604 0 1 27345 16215 17166 17175 31760 31760 -0.010004013239267806 MKFHLWYF 8 Unmodified _MKFHLWYF_ 0 0 0 MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 586.2911987304688 2 586.291505 1170.56846 NaN NaN NaN NaN NaN NaN NaN 40.504 1 43.875 43.375 44.375 3.3712 0 0 0 0.40604 1 8072 8072 2.5775 0 1 27346 16215 17166 17175 31761 31761 -0.010004013239267806 MKFHLWYF 8 Unmodified _MKFHLWYF_ 0 0 0 MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.794189453125 2 586.291505 1170.56846 -0.020779 -1.2182E-05 0.17567 0.00010299 0.15489 9.081E-05 586.2905434730976 40.288 0.46091 43.525 43.358 43.819 3.2372 39 26 2 0 0 0 0.82752 2 8044 8044;8073 5.7604 0 1 60801 27347 16215 17166 17175 31762;31763 31762 -0.010004013239267806 MKFHLWYF 8 Unmodified _MKFHLWYF_ 0 0 0 MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MER77B_dup637|chr9:33328900-33329590:-|1.07732430080699|0.0987012270228129|3.45|151.0|24|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 586.7920532226562 2 586.291505 1170.56846 -0.0068137 -3.9948E-06 0.48567 0.00028474 0.47885 0.00028075 586.2902318823996 40.633 0.074181 43.87 43.848 43.922 3.2372 8 4 3 0 0 0 0.72333 1 8172 8172 0.69038 0.23204 1 44550 27348 16215 17166 17175 31764 31764 -0.010004013239267806 MKFQKQLQ 8 Unmodified _MKFQKQLQ_ 0 0 0 L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|117|2|sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|117|2|sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|117|2|sense MSMS UPN48_class_I_Rep_1 5 525.7901611328125 2 525.791869 1049.56919 NaN NaN NaN NaN NaN NaN NaN 25.833 1 29.4 28.9 29.9 3.5667 0 0 0 0.40625 1 3070 3070 2.3027 0 1 27349 13607 17167 17176 31765 31765 0.04638393325103607 MKGAKKGV 8 Unmodified _MKGAKKGV_ 0 0 0 REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 REV__nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MSMS UPN46_class_I_Rep_3 1 409.75091552734375 2 409.749473 817.484393 NaN NaN NaN NaN NaN NaN NaN 59.957 1 59.957 59.457 60.457 0 0 0 0 0.40798 1 13281 13281 0 0 1 + 27350 19802 17168 17177 31766 31766 0.06835067579163479 MKGHILNLA 9 Unmodified _MKGHILNLA_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MSMS UPN48_class_I_Rep_1 5 498.7845764160156 2 498.786587 995.558621 NaN NaN NaN NaN NaN NaN NaN 74.891 1 78.381 77.881 78.881 3.49 0 0 0 0.4007 1 17718 17718 0.52476 0 1 + 27351 20438 17169 17178 31767 31767 0.060664106706553866 MKGTLRKFI 9 Unmodified _MKGTLRKFI_ 0 0 0 ENSG00000170923|ENST00000641081|OR7G2 ENSG00000170923|ENST00000641081|OR7G2 ENSG00000170923|ENST00000641081|OR7G2 MSMS UPN47_class_I_Rep_1 2 547.333251953125 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 90.098 1 93.788 93.288 94.288 3.6899 0 0 0 0.4007 1 22519 22519 0.52476 0 1 27352 4498 17170 17179 31768 31768 0.10515245630199388 MKHLFNNGL 9 Unmodified _MKHLFNNGL_ 0 0 0 REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|88|3|sense REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|88|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 537.8126831054688 2 537.281669 1072.54878 0.50522 0.00027145 0.16195 8.7015E-05 0.66717 0.00035846 537.2817375999887 109.08 0.12879 112.68 112.61 112.73 3.6046 12 6 3 0 0 0 0.12321 1 26858 26858 3.9444 2.2918 1 922750 + 27353 26359 17171 17180 31769 31769 0.015412226653097605 MKHLFNNGL 9 Unmodified _MKHLFNNGL_ 0 0 0 REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|88|3|sense REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|88|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 537.281669 1072.54878 0.35083 0.00018849 0.27504 0.00014778 0.62587 0.00033627 537.2817727375046 109.28 0.060211 112.91 112.88 112.94 3.6321 0.11467 7.1294E-05 NaN 3.9444 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 417520 + 27354 26359 17171 17180 0.015412226653097605 MKHSKFSL 8 Unmodified _MKHSKFSL_ 0 0 0 REV__L1ME3Cz_dup9955|chr15:50071209-50071355:+|1.048406138261794|0.0009877332036319|10.05|149.0|8|1|anti-sense REV__L1ME3Cz_dup9955|chr15:50071209-50071355:+|1.048406138261794|0.0009877332036319|10.05|149.0|8|1|anti-sense MSMS UPN48_class_I_Rep_3 7 489.27392578125 2 489.265487 976.516422 NaN NaN NaN NaN NaN NaN NaN 47.752 1 51.386 50.886 51.886 3.6339 0 0 0 0.40157 1 9403 9403 7.2892 0 1 + 27355 28137 17172 17181 31770 31770 0.02722435262307954 MKHYFNMI 8 Unmodified _MKHYFNMI_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS UPN47_class_I_Rep_2 3 542.2594604492188 2 542.259348 1082.50414 NaN NaN NaN NaN NaN NaN NaN 21.169 1 24.576 24.076 25.076 3.4074 0 0 0 0.40625 1 2322 2322 2.3027 0.65011 1 27356 16777 17173 17182 31771 31771 -0.03380924472389779 MKHYFNMI 8 Unmodified _MKHYFNMI_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS UPN47_class_I_Rep_3 4 542.2606201171875 2 542.259348 1082.50414 NaN NaN NaN NaN NaN NaN NaN 36.823 1 40.07 39.57 40.57 3.247 0 0 0 0.40625 1 6988 6988 2.3027 0.65011 1 27357 16777 17173 17182 31772 31772 -0.03380924472389779 MKIFMKNL 8 Unmodified _MKIFMKNL_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_3 4 512.8212890625 2 512.787741 1023.56093 NaN NaN NaN NaN NaN NaN NaN 65.307 1 68.487 67.987 68.987 3.1795 0 0 0 0.40625 1 15676 15676 2.3027 0 1 27358 4588 17174 17183 31773 31773 0.05009123084130351 MKIHSYFY 8 Unmodified _MKIHSYFY_ 0 0 0 L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|90|2|anti-sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|90|2|anti-sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|90|2|anti-sense MSMS UPN46_class_I_Rep_3 1 544.7667846679688 2 544.76532 1087.51609 NaN NaN NaN NaN NaN NaN NaN 68.733 1 68.733 68.233 69.233 0 0 0 0 0.4044 1 15711 15711 4.756 0 1 27359 12963 17175 17184 31774 31774 -0.02416984457545368 MKIKLTTK 8 Unmodified _MKIKLTTK_ 0 0 0 L1ME1_dup1071|chr1:96730027-96730631:-|1.3427967163434311|0.0068818293923982|7.61|151.0|6|1|sense L1ME1_dup1071|chr1:96730027-96730631:-|1.3427967163434311|0.0068818293923982|7.61|151.0|6|1|sense L1ME1_dup1071|chr1:96730027-96730631:-|1.3427967163434311|0.0068818293923982|7.61|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 481.806884765625 2 481.806988 961.599423 NaN NaN NaN NaN NaN NaN NaN 22.636 1 26.387 25.887 26.887 3.7507 0 0 0 0.40798 1 2341 2341 0 0 1 27360 12171 17176 17185 31775 31775 0.11708751990272503 MKIPACYY 8 Unmodified _MKIPACYY_ 0 0 0 REV__L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|29|3|sense REV__L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 494.73577880859375 2 494.735174 987.455795 NaN NaN NaN NaN NaN NaN NaN 20.339 1 20.339 19.839 20.839 0 0 0 0 0.40746 1 2097 2097 0.69038 0 1 + 27361 26591 17177 17186 31776 31776 -0.03843418112296604 MKKEKKKF 8 Unmodified _MKKEKKKF_ 0 0 0 REV__L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|14|2|sense REV__L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 533.823974609375 2 533.825712 1065.63687 NaN NaN NaN NaN NaN NaN NaN 53.837 1 57.351 56.851 57.851 3.5143 0 0 0 0.40625 1 11340 11340 2.3027 0 1 + 27362 28796 17178 17187 31777 31777 0.10667843255919252 MKKFPLLI 8 Unmodified _MKKFPLLI_ 0 0 0 REV__ENSG00000064012.22,CASP8,chr2,+,I11.1,201272943,201274888|44|13.8|2|intron REV__ENSG00000064012.22,CASP8,chr2,+,I11.1,201272943,201274888|44|13.8|2|intron MSMS UPN48_class_I_Rep_2 6 495.3150634765625 2 495.314449 988.614345 NaN NaN NaN NaN NaN NaN NaN 67.74 1 71.237 70.737 71.737 3.4964 0 0 0 0.40581 1 15575 15575 2.8892 0 1 + 27363 17735 17179 17188 31778 31778 0.11958243858305195 MKKKKKKL 8 Unmodified _MKKKKKKL_ 0 0 0 L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 516.28076171875 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 48.886 1 48.886 48.386 49.386 0 0 0 0 0.40798 1 10223 10223 0 0 1 27364 9943 17180 17189 31779 31779 0.19076712906576176 MKKKKKKL 8 Unmodified _MKKKKKKL_ 0 0 0 L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 516.3606567382812 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 69.047 1 69.047 68.547 69.547 0 0 0 0 0.40798 1 15800 15800 0 0 1 27365 9943 17180 17189 31780 31780 0.19076712906576176 MKKKKKKL 8 Unmodified _MKKKKKKL_ 0 0 0 L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 516.2781982421875 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 72.773 1 72.773 72.273 73.273 0 0 0 0 0.40798 1 16837 16837 0 0 1 27366 9943 17180 17189 31781 31781 0.19076712906576176 MKKKKKKL 8 Unmodified _MKKKKKKL_ 0 0 0 L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 516.4464721679688 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 74.356 1 74.356 73.856 74.856 0 0 0 0 0.40798 1 17251 17251 0 0 1 27367 9943 17180 17189 31782 31782 0.19076712906576176 MKKKKKKL 8 Unmodified _MKKKKKKL_ 0 0 0 L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 516.4448852539062 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 76.066 1 76.066 75.566 76.566 0 0 0 0 0.40798 1 17723 17723 0 0 1 27368 9943 17180 17189 31783 31783 0.19076712906576176 MKKKKKKL 8 Unmodified _MKKKKKKL_ 0 0 0 L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense L1MA5A_dup2619|chr13:21543215-21544661:+|1.1174609636501982|0.0233217768118442|5.58|150.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 516.3607177734375 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 79.006 1 79.006 78.506 79.506 0 0 0 0 0.40798 1 18537 18537 0 0 1 27369 9943 17180 17189 31784 31784 0.19076712906576176 MKKKKKKSL 9 Unmodified _MKKKKKKSL_ 0 0 0 REV__AluSz6_dup19799|chr7:128002941-128003239:+|1.029941967628341|0.0209366407422344|5.62|151.0|2|1|sense REV__AluSz6_dup19799|chr7:128002941-128003239:+|1.029941967628341|0.0209366407422344|5.62|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 559.876953125 2 559.875736 1117.73692 NaN NaN NaN NaN NaN NaN NaN 97.969 1 101.58 101.08 102.08 3.6065 0 0 0 0.4029 1 23629 23629 0 0 1 + 27370 17224 17181 17190 31785 31785 0.18276080589726007 MKKKKKLL 8 Unmodified _MKKKKKLL_ 0 0 0 ENST00000417638.1_1_9:12790708-12814310:-|nuORF ENST00000417638.1_1_9:12790708-12814310:-|nuORF ENST00000417638.1_1_9:12790708-12814310:-|nuORF MSMS UPN47_class_I_Rep_1 2 508.8443908691406 2 508.854273 1015.69399 NaN NaN NaN NaN NaN NaN NaN 12.943 1 16.393 15.893 16.893 3.45 0 0 0 0.40746 1 197 197 0.69038 0 1 27371 6660 17182 17191 31786 31786 0.18677310532291358 MKKKMLTITQ 10 Unmodified _MKKKMLTITQ_ 0 0 0 ENST00000392396.7_2_3:195802047-195802140:-|nuORF ENST00000392396.7_2_3:195802047-195802140:-|nuORF ENST00000392396.7_2_3:195802047-195802140:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 611.3564453125 2 611.356519 1220.69849 0.62328 0.00038104 -0.72022 -0.00044031 -0.096948 -5.927E-05 611.356031361492 89.943 0.23558 89.943 89.785 90.02 0 30 16 2 0 0 0 0.56333 1 21666 21666 1.4819 0 1 1531200 27372 6522 17183 17192 31787 31787 0.09696406892885534 MKKKMLTITQ 10 Unmodified _MKKKMLTITQ_ 0 0 0 ENST00000392396.7_2_3:195802047-195802140:-|nuORF ENST00000392396.7_2_3:195802047-195802140:-|nuORF ENST00000392396.7_2_3:195802047-195802140:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 611.3724365234375 2 611.356519 1220.69849 0.6231 0.00038094 -1.3315 -0.00081405 -0.70844 -0.00043311 611.3556776475691 87.582 0.091064 87.582 87.533 87.625 0 8 6 2 0 0 0 0.84575 1 20978 20978 1.4819 0 1 103170 27373 6522 17183 17192 31788 31788 0.09696406892885534 MKKKMLTITQ 10 Unmodified _MKKKMLTITQ_ 0 0 0 ENST00000392396.7_2_3:195802047-195802140:-|nuORF ENST00000392396.7_2_3:195802047-195802140:-|nuORF ENST00000392396.7_2_3:195802047-195802140:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 611.356519 1220.69849 0.4384 0.00026802 0.38528 0.00023555 0.82368 0.00050356 611.3575939799076 84.01 0.042053 87.607 87.587 87.629 3.5973 0.012324 0.0010822 NaN 1.4819 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 55621 27374 6522 17183 17192 0.09696406892885534 MKKKRKKEGH 10 Unmodified _MKKKRKKEGH_ 0 0 0 REV__L1MEc_dup13698|chr12:70289061-70289721:-|1.0946046934659066|0.0105425055371071|6.7|151.0|22|3|sense REV__L1MEc_dup13698|chr12:70289061-70289721:-|1.0946046934659066|0.0105425055371071|6.7|151.0|22|3|sense MSMS UPN47_class_I_Rep_3 4 635.3847045898438 2 635.382249 1268.74994 NaN NaN NaN NaN NaN NaN NaN 86.094 1 89.465 88.965 89.965 3.3716 0 0 0 0.53105 1 21578 21578 0.40072 0.050084 1 + 27375 28369 17184 17193 31789 31789 0.1263191170180562 MKKLLVHPM 9 Unmodified _MKKLLVHPM_ 0 0 0 REV__L1MA4_dup6776|chr10:58251031-58252440:-|2.8529510743031112|0.0139986100984623|7.67|151.0|60|1|anti-sense REV__L1MA4_dup6776|chr10:58251031-58252440:-|2.8529510743031112|0.0139986100984623|7.67|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_3 4 548.821533203125 2 548.822115 1095.62968 NaN NaN NaN NaN NaN NaN NaN 14.149 1 17.519 17.019 18.019 3.3697 0 0 0 0.4029 1 483 483 0 0 1 + 27376 25197 17185 17194 31790 31790 0.08568787383865129 MKKPAFWW 8 Unmodified _MKKPAFWW_ 0 0 0 REV__L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|12|1|sense REV__L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 547.287109375 2 547.286223 1092.55789 NaN NaN NaN NaN NaN NaN NaN 22.5 1 26.251 25.751 26.751 3.7507 0 0 0 0.40738 1 2306 2306 0.79363 0 1 + 27377 26036 17186 17195 31791 31791 0.015316160216343633 MKLFLAIY 8 Unmodified _MKLFLAIY_ 0 0 0 REV__Tigger1_dup4097|chr5:65511090-65512758:+|2.9161176559199675|0.0382606060408949|6.25|150.0|75|2|anti-sense REV__Tigger1_dup4097|chr5:65511090-65512758:+|2.9161176559199675|0.0382606060408949|6.25|150.0|75|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 499.28857421875 2 499.790807 997.56706 0.30182 0.00015085 -0.52667 -0.00026322 -0.22485 -0.00011238 499.7900334308681 64.539 0.044029 67.993 67.964 68.008 3.4541 5 3 2 0 0 0 0.72333 1 14620 14620 0.79363 0 1 41707 + 27378 32433 17187 17196 31792 31792 0.06817964587276037 MKLKKLFW 8 Unmodified _MKLKKLFW_ 0 0 0 REV__L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|10|2|sense REV__L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 547.3327026367188 2 547.333173 1092.65179 NaN NaN NaN NaN NaN NaN NaN 88.32 1 91.943 91.443 92.443 3.6229 0 0 0 0.40738 1 21189 21189 0.79363 0 1 + 27379 25999 17188 17197 31793 31793 0.109173351238951 MKLNHKKI 8 Unmodified _MKLNHKKI_ 0 0 0 L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|40|2|sense L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|40|2|sense L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|40|2|sense MSMS UPN48_class_I_Rep_3 7 506.31915283203125 2 506.310229 1010.60591 NaN NaN NaN NaN NaN NaN NaN 61.4 1 64.913 64.413 65.413 3.5129 0 0 0 0.388 1 13566 13566 12.532 3.9383 1 27380 12186 17189 17198 31794 31794 0.10102689941686549 MKLPRTPRIV 10 Unmodified _MKLPRTPRIV_ 0 0 0 REV__AluSx1_dup17771|chr3:5123881-5124168:-|1.1843611369534588|0.0283985525323311|5.38|151.0|21|3|anti-sense REV__AluSx1_dup17771|chr3:5123881-5124168:-|1.1843611369534588|0.0283985525323311|5.38|151.0|21|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 404.2511291503906 3 404.253271 1209.73798 0.0087387 3.5327E-06 -0.82387 -0.00033305 -0.81513 -0.00032952 404.58836819346305 40.048 0.14528 43.699 43.649 43.794 3.6509 20 12 2 0 0 0 0.56337 1 7088 7088 1.4551 1.0469 1 124300 + 27381 17168 17190 17199 31795 31795 0.14150294958608356 MKLVIYLV 8 Unmodified _MKLVIYLV_ 0 0 0 L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_1 2 489.80633544921875 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 72.495 1 75.875 75.375 76.375 3.3799 0 0 0 0.40738 1 17742 17742 0.79363 0 1 27382 10574 17191 17200 31796 31796 0.10866537621370753 MKMDRPYI 8 Unmodified _MKMDRPYI_ 0 0 0 REV__L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|39|3|sense REV__L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.2645874023438 2 527.26463 1052.51471 0.3349 0.00017658 1.3704 0.00072257 1.7053 0.00089915 527.2658813772105 75.247 0.58673 78.65 78.371 78.958 3.4034 115 52 3 0 0 0 0.82752 1 18647 18647 4.756 0.81161 1 115960 + 27383 27787 17192 17201 31797 31797 -0.009449418179656277 MKMDRPYI 8 Unmodified _MKMDRPYI_ 0 0 0 REV__L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|39|3|sense REV__L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.2659912109375 2 527.26463 1052.51471 0.16607 8.7564E-05 1.9115 0.0010078 2.0775 0.0010954 527.2661112755954 75.415 0.63174 78.728 78.431 79.063 3.3127 125 59 3 0 0 0 0.82752 1 18674 18674 4.756 0.22714 1 129630 + 27384 27787 17192 17201 31798 31798 -0.009449418179656277 MKMLGWLF 8 Unmodified _MKMLGWLF_ 0 0 0 REV__L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|64|3|sense REV__L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|64|3|sense MSMS UPN47_class_I_Rep_3 4 513.2686157226562 2 513.269184 1024.52382 NaN NaN NaN NaN NaN NaN NaN 81.07 1 84.393 83.893 84.893 3.3231 0 0 0 0.40738 1 20283 20283 0.79363 0 1 + 27385 26284 17193 17202 31799 31799 0.01253451538354966 MKMRTQLL 8 Unmodified _MKMRTQLL_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MSMS UPN48_class_I_Rep_2 6 510.80780029296875 2 510.788272 1019.56199 NaN NaN NaN NaN NaN NaN NaN 58.985 1 62.484 61.984 62.984 3.4987 0 0 0 0.39242 1 12898 12898 10.824 0.75 1 + 27386 20619 17194 17203 31800 31800 0.05299337453050157 MKMVGLLFR 9 Unmodified _MKMVGLLFR_ 0 0 0 REV__L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|51|3|sense REV__L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|51|3|sense MSMS UPN48_class_I_Rep_1 5 547.8165893554688 2 547.81429 1093.61403 NaN NaN NaN NaN NaN NaN NaN 111.77 1 115.41 114.91 115.91 3.6326 0 0 0 0.39428 1 27118 27118 2.0598 0 1 + 27387 26298 17195 17204 31801 31801 0.070965008668054 MKNRVNVY 8 Unmodified _MKNRVNVY_ 0 0 0 Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|55|2|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|55|2|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|55|2|anti-sense MSMS UPN47_class_I_Rep_3 4 511.8336181640625 2 512.273844 1022.53313 NaN NaN NaN NaN NaN NaN NaN 69.813 1 73.018 72.518 73.518 3.2044 0 0 0 0.40604 1 17044 17044 2.5775 0.27475 1 27388 33445 17196 17205 31802 31802 0.022769361482573913 MKPFFLLF 8 Unmodified _MKPFFLLF_ 0 0 0 REV__L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|48|2|anti-sense REV__L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|48|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 521.2716064453125 2 521.793349 1041.57215 0.28016 0.00014618 -0.42576 -0.00022216 -0.1456 -7.5972E-05 521.7930077619136 50.162 0.92066 53.687 53.292 54.212 3.5246 92 60 2 0 0 0 0.72333 1 10166 10166 5.2307 0.47466 1 213710 + 27389 27450 17197 17206 31803 31803 0.053022684499183015 MKPFFLLF 8 Unmodified _MKPFFLLF_ 0 0 0 REV__L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|48|2|anti-sense REV__L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|48|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 521.793349 1041.57215 0.33393 0.00017424 -0.30561 -0.00015947 0.02832 1.4777E-05 521.7931245076119 49.807 0.91354 53.501 53.203 54.116 3.6946 -0.075023 1.2684E-05 NaN 5.2307 69 58 2 NaN NaN NaN NaN 0 NaN NaN 0 170240 + 27390 27450 17197 17206 0.053022684499183015 MKPFFLLF 8 Unmodified _MKPFFLLF_ 0 0 0 REV__L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|48|2|anti-sense REV__L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|48|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 521.793349 1041.57215 0.30058 0.00015684 -0.23571 -0.00012299 0.064869 3.3848E-05 521.7931173597027 49.92 0.76909 53.541 53.239 54.009 3.621 -0.035582 8.563E-05 NaN 5.2307 68 46 3 NaN NaN NaN NaN 0 NaN NaN 0 162630 + 27391 27450 17197 17206 0.053022684499183015 MKPIMRSL 8 Unmodified _MKPIMRSL_ 0 0 0 REV__ENST00000416734.1_1_7:121080890-121081274:-|nuORF REV__ENST00000416734.1_1_7:121080890-121081274:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.27777099609375 2 488.277541 974.540528 -0.26397 -0.00012889 2.5298 0.0012353 2.2659 0.0011064 488.2775410895879 40.567 0.48637 44.239 43.945 44.431 3.6719 60 37 2 0 0 0 0.82752 1 8080 8080 7.2892 1.0834 1 63174 + 27392 22223 17198 17207 31804 31804 0.05223952424319123 MKPMKFGF 8 Unmodified _MKPMKFGF_ 0 0 0 REV__nc|ENSG00000105227|Q9BXM0-3|PRX REV__nc|ENSG00000105227|Q9BXM0-3|PRX MSMS UPN48_class_I_Rep_1 5 493.25244140625 2 493.253534 984.492515 NaN NaN NaN NaN NaN NaN NaN 38.301 1 41.806 41.306 42.306 3.5052 0 0 0 0.40404 1 6618 6618 5.2307 0.90143 1 + 27393 18281 17199 17208 31805 31805 -0.0003512149571633927 MKPRNWRKK 9 Unmodified _MKPRNWRKK_ 0 0 0 REV__ENST00000463742.1_1_8:103935654-103935939:-|nuORF REV__ENST00000463742.1_1_8:103935654-103935939:-|nuORF MSMS UPN47_class_I_Rep_3 4 622.3484497070312 2 622.363859 1242.71316 NaN NaN NaN NaN NaN NaN NaN 67.43 1 70.621 70.121 71.121 3.1914 0 0 0 0.4007 1 16326 16326 0.52476 0.066424 1 + 27394 18747 17200 17209 31806 31806 0.10151659875896257 MKQLKRKRK 9 Unmodified _MKQLKRKRK_ 0 0 0 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 MULTI-SECPEP UPN48_class_I_Rep_1 5 405.7977600097656 3 405.932531 1214.77576 -0.081828 -3.3217E-05 0.72174 0.00029298 0.63991 0.00025976 405.93281767551855 32.037 0.062645 35.563 35.504 35.567 3.5266 7 5 2 0 0 0 0.12545 1 4806 4806 0.26902 0 1 55400 27395 4496 17201 17210 31807 31807 0.17696805944092375 MKQLKRKRK 9 Unmodified _MKQLKRKRK_ 0 0 0 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 405.932531 1214.77576 -1.2673 -0.00051445 1.6128 0.00065469 0.34549 0.00014025 405.93311334332674 32.128 1.5083 35.427 34.857 36.365 3.2991 -0.1746 0.00010764 NaN 0.26902 197 115 2 NaN NaN NaN NaN 0 NaN NaN 0 113470 27396 4496 17201 17210 0.17696805944092375 MKQLTKDH 8 Unmodified _MKQLTKDH_ 0 0 0 REV__L1MA3_dup7748|chr15:55886775-55889183:+|1.142323167314287|0.0221231499102592|5.69|148.0|39|2|sense REV__L1MA3_dup7748|chr15:55886775-55889183:+|1.142323167314287|0.0221231499102592|5.69|148.0|39|2|sense MSMS UPN47_class_I_Rep_3 4 500.7654724121094 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 113.57 1 117.06 116.56 117.56 3.4963 0 0 0 0.40746 1 27861 27861 0.69038 0 1 + 27397 25113 17202 17211 31808 31808 0.01737229911339 MKQMLPKL 8 Unmodified _MKQMLPKL_ 0 0 0 ENSG00000166415|ENST00000360509|WDR72 ENSG00000166415|ENST00000360509|WDR72 ENSG00000166415|ENST00000360509|WDR72 MULTI-SECPEP UPN47_class_I_Rep_3 4 494.71826171875 2 494.787741 987.560929 0.30361 0.00015022 -1.0083 -0.0004989 -0.7047 -0.00034868 494.7874224213573 51.786 0.63388 54.991 54.686 55.32 3.2055 48 33 2 0 0 0 0.72333 1 11655 11655 2.3027 0 1 79007 27398 4238 17203 17212 31809 31809 0.06665123084133029 MKRFFALYY 9 Unmodified _MKRFFALYY_ 0 0 0 REV__MER58A_dup11038|chr16:16140630-16140853:+|1.1852830822272262|0.350359032122407|1.76|151.0|7|3|sense REV__MER58A_dup11038|chr16:16140630-16140853:+|1.1852830822272262|0.350359032122407|1.76|151.0|7|3|sense MSMS UPN46_class_I_Rep_3 1 619.9334716796875 2 619.823169 1237.63179 NaN NaN NaN NaN NaN NaN NaN 65.218 1 65.218 64.718 65.718 0 0 0 0 0.39326 1 14729 14729 2.3027 0.65011 1 + 27399 31458 17204 17213 31810 31810 0.02247539393306397 MKRFRFQKL 9 Unmodified _MKRFRFQKL_ 0 0 0 REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|202|3|anti-sense REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|202|3|anti-sense MSMS UPN47_class_I_Rep_3 4 627.3690795898438 2 627.36861 1252.72267 NaN NaN NaN NaN NaN NaN NaN 49.421 1 52.655 52.155 53.155 3.2345 0 0 0 0.4007 1 10831 10831 0.52476 0 1 + 27400 23831 17205 17214 31811 31811 0.106414281614434 MKRGWLIGT 9 Unmodified _MKRGWLIGT_ 0 0 0 L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|55|2|sense L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|55|2|sense L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|55|2|sense MSMS UPN46_class_I_Rep_3 1 531.3018188476562 2 531.299862 1060.58517 NaN NaN NaN NaN NaN NaN NaN 64.949 1 64.949 64.449 65.449 0 0 0 0 0.39518 1 14655 14655 1.8442 0 1 27401 9697 17206 17215 31812 31812 0.05730099562015312 MKRNKQSLKKY 11 Unmodified _MKRNKQSLKKY_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|72|2|sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|72|2|sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|72|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 475.2784118652344 3 475.278256 1422.81294 0.24936 0.00011851 -0.04748 -2.2566E-05 0.20188 9.5948E-05 475.2781425820988 59.993 2.0117 63.473 62.07 64.082 3.4801 219 139 2 0 0 0 0.68132 1 12878 12878 0.40827 0 1 417360 27402 14698 17207 17216 31813 31813 0.1184443269919484 MKRSRCSSC 9 Unmodified _MKRSRCSSC_ 0 0 0 MLT1H2_dup2032|chr7:73149694-73149966:-|1.2711348617391656|0.0739785535073544|4.1|151.0|3|1|sense MLT1H2_dup2032|chr7:73149694-73149966:-|1.2711348617391656|0.0739785535073544|4.1|151.0|3|1|sense MLT1H2_dup2032|chr7:73149694-73149966:-|1.2711348617391656|0.0739785535073544|4.1|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 529.2406616210938 2 529.238621 1056.46269 NaN NaN NaN NaN NaN NaN NaN 118.94 1 122.52 122.02 123.02 3.5847 0 0 0 0.4007 1 28278 28278 0.52476 0.12405 1 27403 16447 17208 17217 31814 31814 -0.06328428503343275 MKRYIMFM 8 Unmodified _MKRYIMFM_ 0 0 0 L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|28|3|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|28|3|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|28|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 559.7783813476562 2 560.279226 1118.5439 -0.084546 -4.7369E-05 -1.505 -0.00084322 -1.5895 -0.00089059 560.7791451411574 22.038 0.059952 25.713 25.661 25.721 3.6749 6 4 2 0 0 0 0.72333 1 2494 2494 0.79363 0.10326 1 14231 27404 12451 17209 17218 31815 31815 -0.010631207933329279 MKRYMKHK 8 Unmodified _MKRYMKHK_ 0 0 0 REV__nc|ENSG00000100600|Q99538-3|LGMN REV__nc|ENSG00000100600|Q99538-3|LGMN MULTI-MSMS UPN48_class_I_Rep_3 7 561.305419921875 2 561.307164 1120.59977 0.3185 0.00017878 -1.2082 -0.00067815 -0.88966 -0.00049937 561.3064886336167 28.685 0.69286 32.427 32.168 32.861 3.7424 128 76 2 0 0 0 0.82752 1 3909 3909 0.69038 0.088878 1 97318 + 27405 18124 17210 17219 31816 31816 0.04429848438508088 MKSKLKTKK 9 Unmodified _MKSKLKTKK_ 0 0 0 REV__L1MB3_dup14941|chr17:58348846-58349204:+|3.0400288502791266|0.2637378006666128|3.53|151.0|1|1|sense REV__L1MB3_dup14941|chr17:58348846-58349204:+|3.0400288502791266|0.2637378006666128|3.53|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 546.3521118164062 2 546.352094 1090.68964 NaN NaN NaN NaN NaN NaN NaN 101.55 1 101.55 101.05 102.05 0 0 0 0 0.4029 1 24778 24778 0 0 1 + 27406 25828 17211 17220 31817 31817 0.14791801318733633 MKTIRFRY 8 Unmodified _MKTIRFRY_ 0 0 0 REV__Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|22|2|anti-sense REV__Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|22|2|anti-sense MSMS UPN47_class_I_Rep_1 2 557.803955078125 2 557.813136 1113.61172 NaN NaN NaN NaN NaN NaN NaN 115.15 1 118.73 118.23 119.23 3.5809 0 0 0 0.40746 1 28478 28478 0.69038 0 1 + 27407 32821 17212 17221 31818 31818 0.05945788453345813 MKTPTFNYR 9 Unmodified _MKTPTFNYR_ 0 0 0 REV__L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|14|2|sense REV__L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 579.2772216796875 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 46.484 1 50.184 49.684 50.684 3.6999 0 0 0 0.38639 1 9863 9863 3.9444 0.66309 1 + 27408 26214 17213 17222 31819 31819 -0.002108120258526469 MKTQLMML 8 Unmodified _MKTQLMML_ 0 0 0 ENST00000450363.3_1_12:85285781-85285862:-|nuORF ENST00000450363.3_1_12:85285781-85285862:-|nuORF ENST00000450363.3_1_12:85285781-85285862:-|nuORF MSMS UPN48_class_I_Rep_1 5 498.2579650878906 2 498.257959 994.501365 NaN NaN NaN NaN NaN NaN NaN 28.047 1 31.604 31.104 32.104 3.5571 0 0 0 0.40738 1 3699 3699 0.79363 0 1 27409 6808 17214 17223 31820 31820 0.00389484078436908 MKVKAILFL 9 Unmodified _MKVKAILFL_ 0 0 0 ENST00000369976.5_1_1:109490267-109490336:-|nuORF ENST00000369976.5_1_1:109490267-109490336:-|nuORF ENST00000369976.5_1_1:109490267-109490336:-|nuORF MSMS UPN48_class_I_Rep_1 5 531.8416748046875 2 531.840831 1061.66711 NaN NaN NaN NaN NaN NaN NaN 80.498 1 84.046 83.546 84.546 3.5487 0 0 0 0.39326 1 19192 19192 2.3027 0 1 27410 6377 17215 17224 31821 31821 0.13874201921112217 MKVTFARCCSC 11 Unmodified _MKVTFARCCSC_ 0 0 0 ENST00000368005.5_2_1:161093718-161094104:-|nuORF ENST00000368005.5_2_1:161093718-161094104:-|nuORF ENST00000368005.5_2_1:161093718-161094104:-|nuORF MSMS UPN48_class_I_Rep_1 5 624.7687377929688 2 624.771439 1247.52833 NaN NaN NaN NaN NaN NaN NaN 75.11 1 78.6 78.1 79.1 3.49 0 0 0 0.38417 1 17779 17779 2.4985 0.43874 1 27411 6359 17216 17225 31822 31822 -0.08553775372661221 MKWIGLAH 8 Unmodified _MKWIGLAH_ 0 0 0 REV__Charlie1a_dup5574|chr20:45038682-45040015:-|1.321149491843026|0.0091227951392098|7.18|150.0|73|2|anti-sense REV__Charlie1a_dup5574|chr20:45038682-45040015:-|1.321149491843026|0.0091227951392098|7.18|150.0|73|2|anti-sense MSMS UPN46_class_I_Rep_3 1 478.2616271972656 2 478.262748 954.510943 NaN NaN NaN NaN NaN NaN NaN 14.493 1 14.493 13.993 14.993 0 0 0 0 0.40604 1 647 647 2.5775 0.27475 1 + 27412 17342 17217 17226 31823 31823 0.03186756470472574 MKYNLRRM 8 Unmodified _MKYNLRRM_ 0 0 0 ENST00000249636.10_1_15:68468012-68468054:+|nuORF ENST00000249636.10_1_15:68468012-68468054:+|nuORF ENST00000249636.10_1_15:68468012-68468054:+|nuORF MSMS UPN48_class_I_Rep_3 7 556.2964477539062 2 556.296796 1110.57904 NaN NaN NaN NaN NaN NaN NaN 86.518 1 90.288 89.788 90.788 3.7701 0 0 0 0.40746 1 20537 20537 0.69038 0 1 27413 5914 17218 17227 31824 31824 0.028172580588261553 MKYSEIDII 9 Unmodified _MKYSEIDII_ 0 0 0 nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 MSMS UPN47_class_I_Rep_3 4 556.306884765625 2 556.288825 1110.5631 NaN NaN NaN NaN NaN NaN NaN 63.906 1 67.08 66.58 67.58 3.1741 0 0 0 0.36505 1 15247 15247 7.2892 0 1 27414 1745 17219 17228 31825 31825 0.01223830302933493 MLAESPHTRR 10 Unmodified _MLAESPHTRR_ 0 0 0 ENSG00000183186|ENST00000332235|C2CD4C ENSG00000183186|ENST00000332235|C2CD4C ENSG00000183186|ENST00000332235|C2CD4C MSMS UPN48_class_I_Rep_2 6 599.3125 2 599.311489 1196.60842 NaN NaN NaN NaN NaN NaN NaN 68.855 1 72.364 71.864 72.864 3.5083 0 0 0 0.53105 1 15909 15909 1.1933 0.59184 1 27415 4987 17220 17229 31826 31826 0.017984936086577363 MLARGTYHNKS 11 Unmodified _MLARGTYHNKS_ 0 0 0 ENSG00000111348|ENST00000228945|ARHGDIB ENSG00000111348|ENST00000228945|ARHGDIB ENSG00000111348|ENST00000228945|ARHGDIB MSMS UPN48_class_I_Rep_3 7 639.3231201171875 2 639.324596 1276.63464 NaN NaN NaN NaN NaN NaN NaN 59.635 1 63.152 62.652 63.652 3.5169 0 0 0 0.38417 1 13032 13032 1.0715 0 1 27416 1970 17221 17230 31827 31827 0.007387627801563212 MLASPRLL 8 Unmodified _MLASPRLL_ 0 0 0 ENST00000532315.1_1_11:121975901-121976138:-|nuORF;MSTA_dup742|chr1:155427741-155428147:+|1.156664057770874|0.0124354448777508|6.54|151.0|17|1|anti-sense ENST00000532315.1_1_11:121975901-121976138:-|nuORF ENST00000532315.1_1_11:121975901-121976138:-|nuORF MSMS UPN48_class_I_Rep_3 7 450.7705993652344 2 450.770406 899.526258 NaN NaN NaN NaN NaN NaN NaN 47.668 1 51.302 50.802 51.802 3.6339 0 0 0 0.40625 1 9377 9377 2.3027 0 1 27417 7300 17222 17231 31828 31828 0.07247623267699055 MLCCCCCCCCF 11 Unmodified _MLCCCCCCCCF_ 0 0 0 REV__L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|153|2|anti-sense REV__L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|153|2|anti-sense MSMS UPN48_class_I_Rep_1 5 412.09942626953125 3 412.099611 1233.277 NaN NaN NaN NaN NaN NaN NaN 80.272 1 83.821 83.321 84.321 3.5487 0 0 0 0.38417 1 19153 19153 0 0 1 + 27418 24986 17223 17232 31829 31829 -0.33030440988545706 MLCKYQRGP 9 Unmodified _MLCKYQRGP_ 0 0 0 REV__ENST00000341116.7_1_22:37415816-37419821:+|nuORF REV__ENST00000341116.7_1_22:37415816-37419821:+|nuORF MSMS UPN47_class_I_Rep_2 3 548.2734985351562 2 548.275529 1094.53651 NaN NaN NaN NaN NaN NaN NaN 46.304 1 49.655 49.155 50.155 3.3515 0 0 0 0.38639 1 9837 9837 3.9444 0.3479 1 + 27419 21821 17224 17233 31830 31830 -0.006981370693893041 MLCLCEREK 9 Unmodified _MLCLCEREK_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.7666625976562 2 562.76668 1123.51881 0.44545 0.00025068 0.55726 0.0003136 1.0027 0.00056429 562.7669665248252 89.538 0.35473 93.164 93.084 93.439 3.6255 41 37 2 0 0 0 0.48846 1 21507 21507 1.8442 0.19162 1 108220 27420 11505 17225 17234 31831 31831 -0.03801220386571913 MLCLCEREK 9 Unmodified _MLCLCEREK_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.7672119140625 2 562.76668 1123.51881 0.44388 0.0002498 0.86204 0.00048512 1.3059 0.00073492 562.7670766709712 89.422 0.28162 93.251 93.082 93.363 3.8293 52 35 2 0 0 0 0.46434 1 21224 21224 4.3292 0.73274 1 126920 27421 11505 17225 17234 31832 31832 -0.03801220386571913 MLCLCEREK 9 Unmodified _MLCLCEREK_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 562.76668 1123.51881 0.44388 0.0002498 0.86204 0.00048512 1.3059 0.00073492 562.7670766709712 89.422 0.28162 93.251 93.082 93.363 3.8293 0.04362 0.00011754 NaN 4.3292 52 35 2 NaN NaN NaN NaN 0 NaN NaN 0 126920 27422 11505 17225 17234 -0.03801220386571913 MLCVCSHWF 9 Unmodified _MLCVCSHWF_ 0 0 0 L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|281|2|anti-sense;L1PA3_dup398|chr1:121401448-121407469:+|1.5403744149067495|0.2053749047862868|2.91|151.0|200|1|anti-sense;L1PA2_dup3799|chr11:102369167-102375192:-|1.1149595156277532|0.4609807505989771|1.27|151.0|331|3|anti-sense L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|281|2|anti-sense L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|281|2|anti-sense MSMS UPN47_class_I_Rep_3 4 563.2396850585938 2 563.237558 1124.46056 NaN NaN NaN NaN NaN NaN NaN 52.759 1 55.954 55.454 56.454 3.1948 0 0 0 0.38299 1 11846 11846 4.756 1.8668 1 27423 14199 17226 17235 31833 31833 -0.09668857241194928 MLCWLWIF 8 Unmodified _MLCWLWIF_ 0 0 0 REV__ENSG00000140396.13,NCOA2,chr8,-,I15.1,70144849,70148272|31|8.73|2|intron REV__ENSG00000140396.13,NCOA2,chr8,-,I15.1,70144849,70148272|31|8.73|2|intron MSMS UPN47_class_I_Rep_1 2 556.276123046875 2 556.277009 1110.53947 NaN NaN NaN NaN NaN NaN NaN 44.054 1 47.749 47.249 48.249 3.6951 0 0 0 0.40581 1 9122 9122 2.8892 0.58649 1 + 27424 19337 17227 17236 31834 31834 -0.01138261944606711 MLDDFKLYY 9 Unmodified _MLDDFKLYY_ 0 0 0 L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|31|1|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|31|1|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|31|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 604.7530517578125 2 604.288825 1206.5631 0.51791 0.00031296 2.1855 0.0013207 2.7034 0.0016337 604.2904204260652 55.79 0.081104 59.101 59.051 59.132 3.3102 5 3 2 0 0 0 0.48643 1 12711 12711 2.0598 0 1 28282 27425 14984 17228 17237 31835 31835 -0.03192169697058489 MLDFRYEY 8 Unmodified _MLDFRYEY_ 0 0 0 REV__Charlie1a_dup2687|chr7:151512770-151513766:+|2.4886109110501247|0.0488218021885165|5.67|151.0|64|2|anti-sense REV__Charlie1a_dup2687|chr7:151512770-151513766:+|2.4886109110501247|0.0488218021885165|5.67|151.0|64|2|anti-sense MSMS UPN46_class_I_Rep_3 1 568.7074584960938 2 568.757692 1135.50083 NaN NaN NaN NaN NaN NaN NaN 114.69 1 114.69 114.19 115.19 0 0 0 0 0.40738 1 28354 28354 0.79363 0 1 + 27426 17311 17229 17238 31836 31836 -0.06149896045394598 MLDPLEVHL 9 Oxidation (M) _M(Oxidation (M))LDPLEVHL_ M(1)LDPLEVHL M(46)LDPLEVHL 0 0 1 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN47_class_I_Rep_1 2 541.7810668945312 2 541.781167 1081.54778 0.38775 0.00021008 -0.1537 -8.3271E-05 0.23406 0.00012681 541.7810193030755 65.115 0.7635 68.471 68.112 68.875 3.3557 66 50 2 0 0 0 0.056917 1 15461 15461 46.021 31.183 1 173270 27427 4671 17230 17239 31837 31837 148 0.01026963505751155 MLDPLEVHL 9 Oxidation (M) _M(Oxidation (M))LDPLEVHL_ M(1)LDPLEVHL M(46)LDPLEVHL 0 0 1 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN47_class_I_Rep_2 3 541.7816772460938 2 541.781167 1081.54778 0.33402 0.00018097 -0.10389 -5.6285E-05 0.23014 0.00012468 541.7810772083751 65.358 0.63477 68.614 68.304 68.939 3.2556 79 46 2 0 0 0 0.056917 2 15627 15627;15666 46.021 35.197 1 279410 27428 4671 17230 17239 31838;31839 31838 148 0.01026963505751155 MLERLQRN 8 Unmodified _MLERLQRN_ 0 0 0 L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|67|3|sense L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|67|3|sense L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|67|3|sense MSMS UPN46_class_I_Rep_3 1 530.2904052734375 2 530.290025 1058.5655 NaN NaN NaN NaN NaN NaN NaN 119.98 1 119.98 119.48 120.48 0 0 0 0 0.40625 1 29846 29846 2.3027 0 1 27429 13625 17231 17240 31840 31840 0.038557235512371335 MLERVRLY 8 Unmodified _MLERVRLY_ 0 0 0 LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|108|3|sense LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|108|3|sense LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|108|3|sense MSMS UPN48_class_I_Rep_3 7 540.2921142578125 2 540.305144 1078.59573 NaN NaN NaN NaN NaN NaN NaN 66.638 1 70.146 69.646 70.646 3.5077 0 0 0 0.39819 1 15151 15151 8.5933 0 1 27430 15604 17232 17241 31841 31841 0.05958082216443472 MLEYSLDLQ 9 Unmodified _MLEYSLDLQ_ 0 0 0 nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G MSMS UPN47_class_I_Rep_1 2 556.2883911132812 2 556.270632 1110.52671 NaN NaN NaN NaN NaN NaN NaN 58.643 1 62.06 61.56 62.56 3.4171 0 0 0 0.37692 1 13557 13557 6.2058 0 1 27431 715 17233 17242 31842 31842 -0.02413046593778745 MLFLHLLT 8 Unmodified _MLFLHLLT_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|88|1|anti-sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|88|1|anti-sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|88|1|anti-sense MSMS UPN47_class_I_Rep_1 2 494.28936767578125 2 494.288431 986.562309 NaN NaN NaN NaN NaN NaN NaN 52.587 1 56.146 55.646 56.646 3.5585 0 0 0 0.40738 1 11713 11713 0.79363 0 1 27432 10191 17234 17243 31843 31843 0.06849080444544597 MLFLHPLR 8 Unmodified _MLFLHPLR_ 0 0 0 L1MA8_dup2997|chr5:65995183-65997412:-|1.7097044475190304|0.0324953968235102|5.72|151.0|102|1|anti-sense L1MA8_dup2997|chr5:65995183-65997412:-|1.7097044475190304|0.0324953968235102|5.72|151.0|102|1|anti-sense L1MA8_dup2997|chr5:65995183-65997412:-|1.7097044475190304|0.0324953968235102|5.72|151.0|102|1|anti-sense MSMS UPN46_class_I_Rep_3 1 513.7992553710938 2 513.799497 1025.58444 NaN NaN NaN NaN NaN NaN NaN 17.701 1 17.701 17.201 18.201 0 0 0 0 0.40738 1 1431 1431 0.79363 0 1 27433 10049 17235 17244 31844 31844 0.0726730491296621 MLFLYVKL 8 Unmodified _MLFLYVKL_ 0 0 0 L1ME2z_dup2295|chr6:13664779-13666275:+|1.4261729883873215|0.0257586889514249|5.79|151.0|69|1|anti-sense L1ME2z_dup2295|chr6:13664779-13666275:+|1.4261729883873215|0.0257586889514249|5.79|151.0|69|1|anti-sense L1ME2z_dup2295|chr6:13664779-13666275:+|1.4261729883873215|0.0257586889514249|5.79|151.0|69|1|anti-sense MSMS UPN47_class_I_Rep_3 4 513.8065185546875 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 118.34 1 121.76 121.26 122.26 3.4238 0 0 0 0.40738 1 29181 29181 0.79363 0 1 27434 12557 17236 17245 31845 31845 0.08658537621386131 MLFMKRYL 8 Unmodified _MLFMKRYL_ 0 0 0 LTR41_dup665|chr9:85730253-85730928:+|1.2783926751849664|0.0158481596648357|6.33|151.0|32|2|anti-sense LTR41_dup665|chr9:85730253-85730928:+|1.2783926751849664|0.0158481596648357|6.33|151.0|32|2|anti-sense LTR41_dup665|chr9:85730253-85730928:+|1.2783926751849664|0.0158481596648357|6.33|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 551.300537109375 2 551.301016 1100.58748 0.38878 0.00021434 -0.91483 -0.00050434 -0.52604 -0.00029001 551.3006145098575 65.42 0.5928 68.776 68.45 69.043 3.3557 55 32 2 0 0 0 0.82752 1 15620 15620 5.2307 0 1 100220 27435 15640 17237 17246 31846 31846 0.04120811975462857 MLFMKRYL 8 Unmodified _MLFMKRYL_ 0 0 0 LTR41_dup665|chr9:85730253-85730928:+|1.2783926751849664|0.0158481596648357|6.33|151.0|32|2|anti-sense LTR41_dup665|chr9:85730253-85730928:+|1.2783926751849664|0.0158481596648357|6.33|151.0|32|2|anti-sense LTR41_dup665|chr9:85730253-85730928:+|1.2783926751849664|0.0158481596648357|6.33|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 551.3013916015625 2 551.301016 1100.58748 0.42946 0.00023676 -0.81798 -0.00045095 -0.38852 -0.00021419 551.300646463049 65.77 0.58707 68.955 68.691 69.278 3.1853 52 33 2 0 0 0 0.82752 1 15843 15843 5.2307 0 1 118950 27436 15640 17237 17246 31847 31847 0.04120811975462857 MLFMLCRL 8 Unmodified _MLFMLCRL_ 0 0 0 REV__ENSG00000187546|ENST00000342526|AGMO REV__ENSG00000187546|ENST00000342526|AGMO MSMS UPN47_class_I_Rep_1 2 513.7684936523438 2 513.768494 1025.52244 NaN NaN NaN NaN NaN NaN NaN 23.69 1 27.419 26.919 27.919 3.7298 0 0 0 0.40738 1 2972 2972 0.79363 0 1 + 27437 20932 17238 17247 31848 31848 0.010694941779547662 MLFRIWWL 8 Unmodified _MLFRIWWL_ 0 0 0 REV__L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|169|1|anti-sense REV__L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|169|1|anti-sense MSMS UPN48_class_I_Rep_2 6 582.82373046875 2 582.822973 1163.63139 NaN NaN NaN NaN NaN NaN NaN 36.481 1 40.183 39.683 40.683 3.7021 0 0 0 0.40746 1 6135 6135 0.69038 0 1 + 27438 29038 17239 17248 31849 31849 0.05612164464082525 MLFVFLLTVR 10 Unmodified _MLFVFLLTVR_ 0 0 0 L1PA10_dup1042|chr3:17492864-17495227:-|3.672927261739708|0.0596017464836966|5.95|151.0|75|1|anti-sense L1PA10_dup1042|chr3:17492864-17495227:-|3.672927261739708|0.0596017464836966|5.95|151.0|75|1|anti-sense L1PA10_dup1042|chr3:17492864-17495227:-|3.672927261739708|0.0596017464836966|5.95|151.0|75|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 619.869384765625 2 619.87012 1237.72569 0.50005 0.00030996 -1.595 -0.00098868 -1.0949 -0.00067871 619.8691553581542 86.387 0.086746 90.002 89.924 90.011 3.6153 15 10 2 0 0 0 0.56333 1 21567 21567 1.4819 0 1 58808 27439 13570 17240 17249 31850 31850 0.11633258495567134 MLFWPPWFG 9 Unmodified _MLFWPPWFG_ 0 0 0 REV__L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|163|3|anti-sense REV__L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|163|3|anti-sense MSMS UPN47_class_I_Rep_1 2 590.8027954101562 2 590.786056 1179.55756 NaN NaN NaN NaN NaN NaN NaN 59.461 1 62.859 62.359 63.359 3.3982 0 0 0 0.39326 1 13809 13809 2.3027 0.24298 1 + 27440 26091 17241 17250 31851 31851 -0.025038036982550693 MLFYHDRF 8 Unmodified _MLFYHDRF_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF nc|ENSG00000100504|P06737-2|PYGL nc|ENSG00000100504|P06737-2|PYGL MSMS UPN47_class_I_Rep_2 3 564.767333984375 2 564.768394 1127.52224 NaN NaN NaN NaN NaN NaN NaN 21.172 1 24.579 24.079 25.079 3.4074 0 0 0 0.40738 1 2323 2323 0.79363 0.10326 1 27441 1510 17242 17251 31852 31852 -0.036424662260515106 MLFYRNHF 8 Unmodified _MLFYRNHF_ 0 0 0 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 MSMS UPN48_class_I_Rep_3 7 564.2759399414062 2 564.276386 1126.53822 NaN NaN NaN NaN NaN NaN NaN 113.48 1 117.14 116.64 117.64 3.6568 0 0 0 0.40738 1 26984 26984 0.79363 0 1 27442 4417 17243 17252 31853 31853 -0.019987599891464924 MLGDKLMLHD 10 Unmodified _MLGDKLMLHD_ 0 0 0 REV__ENST00000310301.8_1_7:38764897-38765008:-|nuORF REV__ENST00000310301.8_1_7:38764897-38765008:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 586.7962646484375 2 586.793752 1171.57295 -0.027841 -1.6337E-05 3.8627 0.0022666 3.8348 0.0022502 586.795278142023 39.86 0.18863 43.527 43.445 43.634 3.6668 12 11 2 0 0 0 0.56118 1 7844 7844 2.9952 0 1 59276 + 27443 21702 17244 17253 31854 31854 -0.00597304963366696 MLGEEAEFGR 10 Unmodified _MLGEEAEFGR_ 0 0 0 REV__nc|ENSG00000173805|P54257-3|HAP1 REV__nc|ENSG00000173805|P54257-3|HAP1 MSMS UPN47_class_I_Rep_2 3 569.7625122070312 2 569.763506 1137.51246 NaN NaN NaN NaN NaN NaN NaN 37.371 1 40.77 40.27 41.27 3.3988 0 0 0 0.53105 1 7119 7119 6.2058 1.4498 1 + 27444 20497 17245 17254 31855 31855 -0.05079699022076056 MLGRELPTF 9 Unmodified _MLGRELPTF_ 0 0 0 REV__L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|113|3|sense REV__L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|113|3|sense MSMS UPN48_class_I_Rep_1 5 532.2678833007812 2 532.283877 1062.5532 NaN NaN NaN NaN NaN NaN NaN 59.547 1 63.027 62.527 63.527 3.4801 0 0 0 0.29868 1 13093 13093 10.824 1.4765 1 + 27445 30217 17246 17255 31856 31856 0.024426870882052754 MLGRQGERM 9 Unmodified _MLGRQGERM_ 0 0 0 ENSG00000213214|ENST00000378115|ARHGEF35;ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000213214|ENST00000378115|ARHGEF35 ENSG00000213214|ENST00000378115|ARHGEF35 MSMS UPN48_class_I_Rep_2 6 539.2697143554688 2 539.268235 1076.52192 NaN NaN NaN NaN NaN NaN NaN 62.674 1 66.147 65.647 66.647 3.4738 0 0 0 0.38784 1 14027 14027 3.5965 0.31518 1 27446 911 17247 17256 31857 31857 -0.01328209217535914 MLGYTFRY 8 Unmodified _MLGYTFRY_ 0 0 0 REV__ENST00000054666.10_1_1:7839844-7839949:+|nuORF REV__ENST00000054666.10_1_1:7839844-7839949:+|nuORF MSMS UPN47_class_I_Rep_1 2 525.7572631835938 2 525.757495 1049.50044 NaN NaN NaN NaN NaN NaN NaN 30.818 1 34.562 34.062 35.062 3.7449 0 0 0 0.40581 1 5086 5086 2.8892 0.31174 1 + 27447 21461 17248 17257 31858 31858 -0.02233270974579682 MLHHKHINH 9 Unmodified _MLHHKHINH_ 0 0 0 REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|13|1|sense REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.8028564453125 2 583.803634 1165.59272 -0.075477 -4.4064E-05 -1.0888 -0.00063562 -1.1642 -0.00067968 583.8031406469886 28.029 0.44929 31.796 31.693 32.143 3.7662 39 32 2 0 0 0 0.50015 1 4341 4341 0.6015 0 1 68922 + 27448 25679 17249 17258 31859 31859 0.016542518822916463 MLHKEKSE 8 Unmodified _MLHKEKSE_ 0 0 0 REV__ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|6|intron REV__ENSG00000101745.17,ANKRD12,chr18,+,I15.1,9263889,9275523|62|9.6|6|intron MSMS UPN47_class_I_Rep_3 4 500.7873229980469 2 501.257859 1000.50117 NaN NaN NaN NaN NaN NaN NaN 69.324 1 72.528 72.028 73.028 3.2044 0 0 0 0.40643 1 16896 16896 2.0598 0 1 + 27449 18172 17250 17259 31860 31860 0.0009352367444535048 MLHKERNR 8 Unmodified _MLHKERNR_ 0 0 0 REV__ENST00000460321.5_1_3:118935188-118955715:-|nuORF REV__ENST00000460321.5_1_3:118935188-118955715:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.29541015625 2 542.295642 1082.57673 NaN NaN NaN NaN NaN NaN NaN 92.772 1 92.772 92.272 93.272 0 0 0 0 0.40746 1 22464 22464 0.69038 0 1 + 27450 18729 17251 17260 31861 31861 0.03874545645385297 MLHLHLKM 8 Unmodified _MLHLHLKM_ 0 0 0 REV__ENST00000265827.7_1_7:127014698-127014806:-|nuORF REV__ENST00000265827.7_1_7:127014698-127014806:-|nuORF MSMS UPN46_class_I_Rep_3 1 511.6416015625 2 511.785533 1021.55651 NaN NaN NaN NaN NaN NaN NaN 39.803 1 39.803 39.303 40.303 0 0 0 0 0.40738 1 7677 7677 0.79363 0 1 + 27451 21596 17252 17261 31862 31862 0.04659658661216781 MLHLYVLH 8 Unmodified _MLHLYVLH_ 0 0 0 REV__L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|78|1|anti-sense REV__L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.2822265625 2 513.28368 1024.55281 NaN NaN NaN NaN NaN NaN NaN 32.265 1 35.792 35.292 36.292 3.5266 0 0 0 0.40581 1 4885 4885 2.8892 0 1 + 27452 28758 17253 17262 31863 31863 0.041513121590014634 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 523.3035278320312 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 79.078 1 82.613 82.113 83.113 3.5352 0 0 0 0.40625 1 18864 18864 2.3027 0 1 27453 9641 17254 17263 31864 31864 0.10611280321313643 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 523.3036499023438 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 78.871 1 82.504 82.004 83.004 3.6331 0 0 0 0.40625 1 18720 18720 2.3027 0 1 27454 9641 17254 17263 31865 31865 0.10611280321313643 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 523.3035278320312 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 79.506 1 83.139 82.639 83.639 3.6331 0 0 0 0.40625 1 18891 18891 2.3027 0 1 27455 9641 17254 17263 31866 31866 0.10611280321313643 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 523.3037109375 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 79.633 1 83.266 82.766 83.766 3.6331 0 0 0 0.40625 1 18926 18926 2.3027 0 1 27456 9641 17254 17263 31867 31867 0.10611280321313643 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.3035278320312 2 523.320597 1044.62664 0.45801 0.00023969 1.407 0.00073629 1.865 0.00097598 523.32100458492 79.53 0.59174 83.172 82.804 83.395 3.6423 98 73 2 0 0 0 0.82752 1 18826 18826 2.3027 0 1 122460 27457 9641 17254 17263 31868 31868 0.10611280321313643 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 523.3037109375 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 78.79 1 82.412 81.912 82.912 3.6216 0 0 0 0.40625 1 18663 18663 2.3027 0 1 27458 9641 17254 17263 31869 31869 0.10611280321313643 MLIKRWAK 8 Unmodified _MLIKRWAK_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 523.3037109375 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 78.914 1 82.536 82.036 83.036 3.6216 0 0 0 0.40625 1 18696 18696 2.3027 0 1 27459 9641 17254 17263 31870 31870 0.10611280321313643 MLKILYKYG 9 Unmodified _MLKILYKYG_ 0 0 0 L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|92|3|anti-sense L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|92|3|anti-sense L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|92|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.79638671875 2 564.827921 1127.64129 NaN NaN NaN NaN NaN NaN NaN 36.408 1 40.095 39.595 40.595 3.6877 0 0 0 0.39428 1 6115 6115 2.0598 0 1 27460 12214 17255 17264 31871 31871 0.08257307678809411 MLKKKKKK 8 Unmodified _MLKKKKKK_ 0 0 0 L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|21|2|sense REV__L1MD2_dup667|chr2:26048032-26048606:-|1.3582266087911217|0.0129359305713885|6.71|151.0|23|3|sense REV__L1MD2_dup667|chr2:26048032-26048606:-|1.3582266087911217|0.0129359305713885|6.71|151.0|23|3|sense MSMS UPN46_class_I_Rep_3 1 516.36181640625 2 516.359722 1030.70489 NaN NaN NaN NaN NaN NaN NaN 77.174 1 77.174 76.674 77.674 0 0 0 0 0.40746 1 18030 18030 0.69038 0 1 27461 11318 17256 17265 31872 31872 0.1907671290655344 MLKKRKFC 8 Unmodified _MLKKRKFC_ 0 0 0 ENST00000446758.5_1_2:179974628-179981501:-|nuORF ENST00000446758.5_1_2:179974628-179981501:-|nuORF ENST00000446758.5_1_2:179974628-179981501:-|nuORF MSMS UPN48_class_I_Rep_1 5 527.3065185546875 2 527.306632 1052.59871 NaN NaN NaN NaN NaN NaN NaN 94.096 1 97.717 97.217 98.217 3.6208 0 0 0 0.40738 1 22635 22635 0.79363 0 1 27462 6793 17257 17266 31873 31873 0.07451634069616375 MLKLEEIL 8 Unmodified _MLKLEEIL_ 0 0 0 ENSG00000147082|ENST00000376042|CCNB3;ENST00000487204.1_1_X:50085140-50094699:+|nuORF;nc|ENSG00000147082|Q8WWL7-2|CCNB3 ENSG00000147082|ENST00000376042|CCNB3 ENSG00000147082|ENST00000376042|CCNB3 MSMS UPN47_class_I_Rep_3 4 494.7905578613281 2 494.791004 987.567454 NaN NaN NaN NaN NaN NaN NaN 66.41 1 69.595 69.095 70.095 3.1853 0 0 0 0.40738 1 16015 16015 0.79363 0 1 27463 3459 17258 17267 31874 31874 0.0731733951647584 MLKRRRPH 8 Unmodified _MLKRRRPH_ 0 0 0 REV__L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|27|2|sense REV__L1PBa_dup657|chr4:139143976-139145520:+|5.471768467589063|0.104064015237692|5.72|151.0|27|2|sense MSMS UPN48_class_I_Rep_1 5 547.3323974609375 2 547.329819 1092.64509 NaN NaN NaN NaN NaN NaN NaN 89.384 1 93.01 92.51 93.51 3.6255 0 0 0 0.40746 1 21463 21463 0.69038 0 1 + 27464 30657 17259 17268 31875 31875 0.10246835015914257 MLLEIIIQ 8 Unmodified _MLLEIIIQ_ 0 0 0 ENST00000422105.5_2_3:184542010-184542358:+|nuORF ENST00000422105.5_2_3:184542010-184542358:+|nuORF ENST00000422105.5_2_3:184542010-184542358:+|nuORF MSMS UPN47_class_I_Rep_3 4 486.7938537597656 2 486.793546 971.57254 NaN NaN NaN NaN NaN NaN NaN 76.815 1 80.084 79.584 80.584 3.269 0 0 0 0.40604 1 19111 19111 2.5775 0 1 27465 6686 17260 17269 31876 31876 0.08561643379130146 MLLFAIQI 8 Unmodified _MLLFAIQI_ 0 0 0 L1ME4b_dup7773|chr6:30320788-30321198:+|1.2630065630290117|0.0560579877149402|4.49|151.0|23|1|anti-sense L1ME4b_dup7773|chr6:30320788-30321198:+|1.2630065630290117|0.0560579877149402|4.49|151.0|23|1|anti-sense L1ME4b_dup7773|chr6:30320788-30321198:+|1.2630065630290117|0.0560579877149402|4.49|151.0|23|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.28228759765625 2 474.782982 947.55141 0.091824 4.3597E-05 1.4791 0.00070223 1.5709 0.00074583 474.7836523924005 34.54 0.045906 34.54 34.524 34.57 0 5 3 2 0 0 0 0.72333 1 6182 6182 2.5775 0 1 127630 27466 12941 17261 17270 31877 31877 0.07553678070246406 MLLFKLTI 8 Unmodified _MLLFKLTI_ 0 0 0 L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|190|1|anti-sense L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|190|1|anti-sense L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|190|1|anti-sense MSMS UPN47_class_I_Rep_2 3 489.80645751953125 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 101.88 1 105.39 104.89 105.89 3.5151 0 0 0 0.40746 1 24830 24830 0.69038 0 1 27467 13651 17262 17271 31878 31878 0.10866537621382122 MLLFSMWAL 9 Unmodified _MLLFSMWAL_ 0 0 0 REV__L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|103|2|anti-sense REV__L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|103|2|anti-sense MSMS UPN47_class_I_Rep_3 4 556.3071899414062 2 556.287574 1110.56059 NaN NaN NaN NaN NaN NaN NaN 63.775 1 66.949 66.449 67.449 3.1741 0 0 0 0.36505 1 15208 15208 7.2892 0 1 + 27468 28855 17263 17272 31879 31879 0.009737033642750248 MLLHCCKLV 9 Unmodified _MLLHCCKLV_ 0 0 0 L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|53|1|sense L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|53|1|sense L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|53|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 530.2782592773438 2 530.279226 1058.5439 0.3782 0.00020055 -1.0891 -0.00057754 -0.71093 -0.00037699 530.2787489388431 67.155 0.37417 70.346 70.214 70.589 3.1914 34 26 2 0 0 0 0.12444 1 16235 16235 2.0598 2.0598 1 57486 27469 14904 17264 17273 31880 31880 0.016968792066563765 MLLHVPMI 8 Unmodified _MLLHVPMI_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN47_class_I_Rep_2 3 477.2684020996094 2 477.269184 952.523815 NaN NaN NaN NaN NaN NaN NaN 110.99 1 114.52 114.02 115.02 3.5271 0 0 0 0.40738 1 27018 27018 0.79363 0 1 + 27470 19248 17265 17274 31881 31881 0.04565451538360321 MLLKPLKQ 8 Unmodified _MLLKPLKQ_ 0 0 0 ENST00000467434.5_1_9:115216373-115221761:+|nuORF ENST00000467434.5_1_9:115216373-115221761:+|nuORF ENST00000467434.5_1_9:115216373-115221761:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8119812011719 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 42.534 1 45.895 45.395 46.395 3.3611 0 0 0 0.40746 1 8684 8684 0.69038 0 1 27471 6908 17266 17275 31882 31882 0.11849055852917445 MLLLFLTK 8 Unmodified _MLLLFLTK_ 0 0 0 MER21C_dup2951|chr9:88413857-88414466:-|1.139019775661345|0.0895500606688634|3.67|151.0|36|3|anti-sense MER21C_dup2951|chr9:88413857-88414466:-|1.139019775661345|0.0895500606688634|3.67|151.0|36|3|anti-sense MER21C_dup2951|chr9:88413857-88414466:-|1.139019775661345|0.0895500606688634|3.67|151.0|36|3|anti-sense MSMS UPN47_class_I_Rep_3 4 489.80633544921875 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 73.019 1 76.246 75.746 76.746 3.2271 0 0 0 0.40738 1 18008 18008 0.79363 0 1 27472 15893 17267 17276 31883 31883 0.10866537621370753 MLLLLLLL 8 Unmodified _MLLLLLLL_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;L1PA15-16_dup470|chr5:179995331-179995964:-|5.288418772888381|0.0961989725491126|5.78|151.0|27|2|anti-sense;L1MB4_dup6991|chr14:101895302-101896007:-|1.326568839461753|0.1036223876961297|3.68|151.0|32|1|anti-sense;nc|ENSG00000211747|A0A075B6N2|TRBV20-1;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000114988|Q9H0V9-2|LMAN2L;nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8;ENSG00000254521|ENST00000291707|SIGLEC12;ENSG00000163283|ENST00000392027|ALPP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__L1MC4_dup8993|chr6:38040570-38041621:-|1.4952667857637865|0.0086255342081473|7.44|151.0|63|2|anti-sense;ENSG00000163283|ENST00000392027|ALPP;REV__ENST00000527315.5_1_15:69323805-69349033:+|nuORF nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MSMS UPN47_class_I_Rep_3 4 471.328369140625 2 471.327025 940.639497 NaN NaN NaN NaN NaN NaN NaN 17.401 1 20.76 20.26 21.26 3.3581 0 0 0 0.40738 1 1266 1266 0.79363 0 1 27473 16850;26954;3994;21379 17268 17277 31884 31884 0.16680298660878634 MLLLPKPH 8 Unmodified _MLLLPKPH_ 0 0 0 REV__MER102b_dup1041|chr4:102808099-102808249:-|1.001971026238338|0.249153181332513|2.01|151.0|7|1|anti-sense REV__MER102b_dup1041|chr4:102808099-102808249:-|1.001971026238338|0.249153181332513|2.01|151.0|7|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.79107666015625 2 474.788598 947.562644 0.25234 0.00011981 3.0997 0.0014717 3.352 0.0015915 474.7900752357317 107.95 0.79926 107.95 107.88 108.68 0 108 81 2 0 0 0 0.82752 1 26453 26453 5.2307 0.90143 1 120210000 + 27474 31063 17269 17278 31885 31885 0.08676500164381196 MLLLRSPL 8 Unmodified _MLLLRSPL_ 0 0 0 ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7950439453125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 38.548 1 42.213 41.713 42.713 3.6652 0 0 0 0.40404 1 7441 7441 5.2307 0.90143 1 27475 7345 17270 17279 31886 31886 0.10008482818807352 MLLLRSPL 8 Unmodified _MLLLRSPL_ 0 0 0 ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 41.728 1 45.093 44.593 45.593 3.3655 0 0 0 0.40581 1 8438 8438 2.8892 0.31174 1 27476 7345 17270 17279 31887 31887 0.10008482818807352 MLLLRSPL 8 Unmodified _MLLLRSPL_ 0 0 0 ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.79510498046875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 31.296 1 34.595 34.095 35.095 3.2991 0 0 0 0.40581 1 5314 5314 2.8892 0.31174 1 27477 7345 17270 17279 31888 31888 0.10008482818807352 MLLLRSPL 8 Unmodified _MLLLRSPL_ 0 0 0 ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF ENST00000539254.1_1_11:47496926-47496971:-|nuORF MSMS UPN48_class_I_Rep_2 6 471.7958068847656 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 49.361 1 53.079 52.579 53.579 3.7175 0 0 0 0.40581 1 9965 9965 2.8892 0.31174 1 27478 7345 17270 17279 31889 31889 0.10008482818807352 MLLMWALL 8 Unmodified _MLLMWALL_ 0 0 0 REV__L1PREC2_dup3344|chr7:64799948-64801817:-|1.1346640081420187|0.3484464743023305|1.7|151.0|84|2|anti-sense REV__L1PREC2_dup3344|chr7:64799948-64801817:-|1.1346640081420187|0.3484464743023305|1.7|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_1 2 495.7809753417969 2 495.779385 989.544217 NaN NaN NaN NaN NaN NaN NaN 82.843 1 86.382 85.882 86.882 3.5386 0 0 0 0.39167 1 20705 20705 11.114 0 1 + 27479 30702 17271 17280 31890 31890 0.04902622198176232 MLLSRPII 8 Unmodified _MLLSRPII_ 0 0 0 REV__ENST00000312561.8_2_12:32123162-32123267:+|nuORF REV__ENST00000312561.8_2_12:32123162-32123267:+|nuORF MSMS UPN48_class_I_Rep_3 7 471.7960205078125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 97.339 1 101.25 100.75 101.75 3.9084 0 0 0 0.40404 1 23072 23072 5.2307 0 1 + 27480 21710 17272 17281 31891 31891 0.10008482818830089 MLLTYANR 8 Unmodified _MLLTYANR_ 0 0 0 REV__L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|74|2|sense REV__L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|74|2|sense MSMS UPN46_class_I_Rep_3 1 491.27667236328125 2 491.262945 980.511337 NaN NaN NaN NaN NaN NaN NaN 42.01 1 42.01 41.51 42.51 0 0 0 0 0.40364 1 8283 8283 5.7604 0 1 + 27481 29189 17273 17282 31892 31892 0.020301313996810677 MLLWPTPF 8 Unmodified _MLLWPTPF_ 0 0 0 REV__ENST00000463352.5_1_2:239335385-239335433:+|nuORF REV__ENST00000463352.5_1_2:239335385-239335433:+|nuORF MSMS UPN48_class_I_Rep_2 6 502.78680419921875 2 502.767332 1003.52011 NaN NaN NaN NaN NaN NaN NaN 77.798 1 81.421 80.921 81.921 3.6222 0 0 0 0.36148 1 18435 18435 19.439 2.4967 1 + 27482 22447 17274 17283 31893 31893 0.01849105036160381 MLLWPTPF 8 Unmodified _MLLWPTPF_ 0 0 0 REV__ENST00000463352.5_1_2:239335385-239335433:+|nuORF REV__ENST00000463352.5_1_2:239335385-239335433:+|nuORF MSMS UPN48_class_I_Rep_2 6 502.78692626953125 2 502.767332 1003.52011 NaN NaN NaN NaN NaN NaN NaN 77.973 1 81.596 81.096 82.096 3.6222 0 0 0 0.36148 1 18486 18486 19.439 2.4967 1 + 27483 22447 17274 17283 31894 31894 0.01849105036160381 MLLYISLSF 9 Unmodified _MLLYISLSF_ 0 0 0 REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|107|2|anti-sense REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|107|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.799072265625 2 543.798829 1085.5831 NaN NaN NaN NaN NaN NaN NaN 66.781 1 70.277 69.777 70.777 3.4964 0 0 0 0.35339 1 15283 15283 7.9102 0 1 + 27484 24758 17275 17284 31895 31895 0.04373626033543587 MLLYLLEVI 9 Unmodified _MLLYLLEVI_ 0 0 0 L1MB2_dup8269|chr19:24123176-24124307:-|1.2112597557221656|0.1098989152501667|3.46|150.0|15|2|sense L1MB2_dup8269|chr19:24123176-24124307:-|1.2112597557221656|0.1098989152501667|3.46|150.0|15|2|sense L1MB2_dup8269|chr19:24123176-24124307:-|1.2112597557221656|0.1098989152501667|3.46|150.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.830078125 2 553.830129 1105.6457 0.51737 0.00028653 0.096914 5.3674E-05 0.61428 0.00034021 553.8298305909312 81.42 0.52925 84.983 84.748 85.278 3.5624 102 64 2 0 0 0 0.48643 1 19467 19467 2.0598 0 1 273420 27485 10301 17276 17285 31896 31896 0.09710772101743714 MLMDAWVAST 10 Unmodified _MLMDAWVAST_ 0 0 0 L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|59|1|anti-sense L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|59|1|anti-sense L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|59|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.2799682617188 2 562.759378 1123.5042 0.046369 2.6095E-05 -0.70968 -0.00039938 -0.66331 -0.00037328 562.7588546100487 30.485 0.68497 33.967 33.767 34.452 3.4821 99 55 3 0 0 0 0.56033 1 5093 5093 3.5965 0.60125 1 128210 27486 10398 17277 17286 31897 31897 -0.05260969263053994 MLMGRLED 8 Unmodified _MLMGRLED_ 0 0 0 nc|ENSG00000204414|Q14406-4|CSHL1;nc|ENSG00000204414|Q14406-3|CSHL1;nc|ENSG00000204414|Q14406-2|CSHL1;ENSG00000204414|ENST00000309894|CSHL1 nc|ENSG00000204414|Q14406-4|CSHL1 nc|ENSG00000204414|Q14406-4|CSHL1 MSMS UPN47_class_I_Rep_3 4 482.7316589355469 2 482.733163 963.451773 NaN NaN NaN NaN NaN NaN NaN 32.351 1 35.637 35.137 36.137 3.2867 0 0 0 0.40738 1 5633 5633 0.79363 0 1 27487 5524 17278 17287 31898 31898 -0.031415076060284264 MLMYGLFF 8 Unmodified _MLMYGLFF_ 0 0 0 REV__FAM57B|p.C161Y|1|0.05|ENSG00000149926|chr16:30025784-30025784|C/T|missense_variant REV__FAM57B|p.C161Y|1|0.05|ENSG00000149926|chr16:30025784-30025784|C/T|missense_variant MSMS UPN47_class_I_Rep_1 2 510.7604675292969 2 511.247917 1020.48128 NaN NaN NaN NaN NaN NaN NaN 21.963 1 25.638 25.138 26.138 3.6749 0 0 0 0.40738 1 2472 2472 0.79363 0 1 + 27488 23315 17279 17288 31899 31899 -0.028139435898538068 MLNGSSSGRRN 11 Unmodified _MLNGSSSGRRN_ 0 0 0 L1MEc_dup6732|chr6:12156617-12157922:-|1.153171781393968|0.1935023045674088|2.58|151.0|21|2|sense L1MEc_dup6732|chr6:12156617-12157922:-|1.153171781393968|0.1935023045674088|2.58|151.0|21|2|sense L1MEc_dup6732|chr6:12156617-12157922:-|1.153171781393968|0.1935023045674088|2.58|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 589.7896728515625 2 589.788378 1177.5622 NaN NaN NaN NaN NaN NaN NaN 53.925 1 57.452 56.952 57.952 3.5278 0 0 0 0.38417 1 12122 12122 2.7352 0 1 27489 13126 17280 17289 31900 31900 -0.019475712933854084 MLPGMVVP 8 Unmodified _MLPGMVVP_ 0 0 0 REV__IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant REV__IPO5|p.G674Dfs*2|1|0.05|ENSG00000065150|chr13:98010188-98010188|A/-|frameshift_variant MULTI-SECPEP UPN48_class_I_Rep_3 7 422.5926208496094 2 422.226985 842.439417 0.10856 4.5836E-05 2.2186 0.00093676 2.3272 0.00098259 422.2278669363414 60.839 0.10756 64.351 64.285 64.393 3.5128 10 8 2 0 0 0 0.72333 1 13402 13402 2.8892 0 1 67596 + 27490 17751 17281 17290 31901 31901 0.011895007216139675 MLQCAMEENC 10 Unmodified _MLQCAMEENC_ 0 0 0 ENSG00000134013|ENST00000389131|LOXL2 ENSG00000134013|ENST00000389131|LOXL2 ENSG00000134013|ENST00000389131|LOXL2 MSMS UPN48_class_I_Rep_2 6 586.292724609375 2 586.216162 1170.41777 NaN NaN NaN NaN NaN NaN NaN 62.664 1 66.138 65.638 66.638 3.4738 0 0 0 0.53105 1 14024 14024 1.3295 0.5359 1 27491 2828 17282 17291 31902 31902 -0.1606204015156436 MLQFFYAY 8 Unmodified _MLQFFYAY_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MSMS UPN47_class_I_Rep_1 2 541.756591796875 2 541.754421 1081.49429 NaN NaN NaN NaN NaN NaN NaN 75.137 1 78.531 78.031 79.031 3.3937 0 0 0 0.4044 1 18530 18530 4.756 0 1 27492 1235 17283 17292 31903 31903 -0.04319789206124369 MLQHWVLY 8 Unmodified _MLQHWVLY_ 0 0 0 L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|228|1|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|228|1|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|228|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 545.7822265625 2 545.281137 1088.54772 0.31387 0.00017115 0.357 0.00019466 0.67087 0.00036581 545.7827834138785 48.02 0.11222 51.37 51.28 51.393 3.3492 10 8 2 0 0 0 0.82752 1 10318 10318 5.2307 0 1 106230 27493 14163 17284 17293 31904 31904 0.006990082963966415 MLQHWVLY 8 Unmodified _MLQHWVLY_ 0 0 0 L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|228|1|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|228|1|anti-sense L1PA17_dup2090|chr7:112869344-112874638:+|1.3001610375580042|0.0375962840554148|5.11|149.0|228|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 545.281137 1088.54772 0.31387 0.00017115 0.357 0.00019466 0.67087 0.00036581 545.7827834138785 48.02 0.11222 51.37 51.28 51.393 3.3492 0 0 NaN 5.2307 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 106230 27494 14163 17284 17293 0.006990082963966415 MLQRARRK 8 Unmodified _MLQRARRK_ 0 0 0 ENST00000449200.1_1_22:40502501-40502987:-|nuORF ENST00000449200.1_1_22:40502501-40502987:-|nuORF ENST00000449200.1_1_22:40502501-40502987:-|nuORF MSMS UPN48_class_I_Rep_2 6 529.8056030273438 2 529.821827 1057.6291 NaN NaN NaN NaN NaN NaN NaN 21.904 1 25.55 25.05 26.05 3.6459 0 0 0 0.40604 1 2148 2148 2.5775 0 1 27495 6805 17285 17294 31905 31905 0.10259128779011917 MLQVFQKYF 9 Unmodified _MLQVFQKYF_ 0 0 0 REV__MER11B_dup50|chr2:46642561-46643641:-|2.2184918015749826|0.3433080984910826|2.69|151.0|46|1|anti-sense REV__MER11B_dup50|chr2:46642561-46643641:-|2.2184918015749826|0.3433080984910826|2.69|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_1 5 602.7785034179688 2 602.315177 1202.6158 NaN NaN NaN NaN NaN NaN NaN 72.36 1 75.834 75.334 76.334 3.4732 0 0 0 0.39428 1 16976 16976 2.0598 0.21551 1 + 27496 31094 17286 17295 31906 31906 0.022598331564040564 MLRFSSPLY 9 Unmodified _MLRFSSPLY_ 0 0 0 HAL1_dup14969|chr10:96149309-96149736:-|1.3952760433775993|0.1678753800092252|3.06|151.0|9|2|sense HAL1_dup14969|chr10:96149309-96149736:-|1.3952760433775993|0.1678753800092252|3.06|151.0|9|2|sense HAL1_dup14969|chr10:96149309-96149736:-|1.3952760433775993|0.1678753800092252|3.06|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 557.2929077148438 2 557.291702 1112.56885 NaN NaN NaN NaN NaN NaN NaN 29.192 1 32.742 32.242 33.242 3.5499 0 0 0 0.39428 1 4020 4020 2.0598 0 1 27497 7810 17287 17296 31907 31907 0.01706973605246276 MLRNWWYQ 8 Unmodified _MLRNWWYQ_ 0 0 0 HAL1_dup13422|chrX:30563413-30564819:+|1.195994774416141|0.0167059111437625|6.16|151.0|2|1|sense HAL1_dup13422|chrX:30563413-30564819:+|1.195994774416141|0.0167059111437625|6.16|151.0|2|1|sense HAL1_dup13422|chrX:30563413-30564819:+|1.195994774416141|0.0167059111437625|6.16|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 598.7892456054688 2 598.787118 1195.55968 NaN NaN NaN NaN NaN NaN NaN 41.673 1 45.352 44.852 45.852 3.6792 0 0 0 0.4044 1 8392 8392 4.756 0.81161 1 27498 7798 17288 17297 31908 31908 -0.030273749604248223 MLRQPNGWMR 10 Unmodified _MLRQPNGWMR_ 0 0 0 REV__L1MC5a_dup11880|chr12:26993383-26994061:-|3.992154412964288|0.1975529552544067|4.34|151.0|7|2|sense REV__L1MC5a_dup11880|chr12:26993383-26994061:-|3.992154412964288|0.1975529552544067|4.34|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 644.8209838867188 2 644.823709 1287.63287 NaN NaN NaN NaN NaN NaN NaN 37.998 1 41.663 41.163 42.163 3.6652 0 0 0 0.53105 1 7274 7274 1.4819 0.28856 1 + 27499 27113 17289 17298 31909 31909 0.0005543049053358118 MLRWRLTE 8 Unmodified _MLRWRLTE_ 0 0 0 REV__ENST00000395491.6_1_17:21202227-21203887:+|nuORF REV__ENST00000395491.6_1_17:21202227-21203887:+|nuORF MSMS UPN47_class_I_Rep_3 4 552.7996826171875 2 552.802768 1103.59098 NaN NaN NaN NaN NaN NaN NaN 61.889 1 65.056 64.556 65.556 3.1667 0 0 0 0.40292 1 14633 14633 6.7232 1.8262 1 + 27500 22116 17290 17299 31910 31910 0.0433319807366388 MLSLVVSAI 9 Unmodified _MLSLVVSAI_ 0 0 0 REV__ENST00000380834.6_1_2:25044103-25044397:+|nuORF REV__ENST00000380834.6_1_2:25044103-25044397:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 467.1016540527344 2 466.777896 931.54124 0.046694 2.1796E-05 -0.41724 -0.00019476 -0.37054 -0.00017296 466.7776489219513 54.593 0.42502 58.095 57.832 58.257 3.5014 35 22 2 0 0 0 0.12321 1 12337 12337 3.9444 0 1 66010 + 27501 22058 17291 17300 31911 31911 0.07273070345001997 MLSNFQTF 8 Unmodified _MLSNFQTF_ 0 0 0 L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|74|2|anti-sense L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|74|2|anti-sense L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|74|2|anti-sense MSMS UPN48_class_I_Rep_3 7 494.2340393066406 2 494.233853 986.453153 NaN NaN NaN NaN NaN NaN NaN 119.32 1 122.88 122.38 123.38 3.566 0 0 0 0.40738 1 28358 28358 0.79363 0 1 27502 13324 17292 17301 31912 31912 -0.04061550245592116 MLSTTYCVI 9 Unmodified _MLSTTYCVI_ 0 0 0 L1ME1_dup1331|chr1:113751213-113751924:-|1.501499604855354|0.0093394138015906|7.33|151.0|4|1|sense L1ME1_dup1331|chr1:113751213-113751924:-|1.501499604855354|0.0093394138015906|7.33|151.0|4|1|sense L1ME1_dup1331|chr1:113751213-113751924:-|1.501499604855354|0.0093394138015906|7.33|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 515.7376708984375 2 515.751021 1029.48749 NaN NaN NaN NaN NaN NaN NaN 28.437 1 32.203 31.703 32.703 3.7662 0 0 0 0.38478 1 4380 4380 4.3292 0.38484 1 27503 12215 17293 17302 31913 31913 -0.02607470149018809 MLTLLNVSG 9 Unmodified _MLTLLNVSG_ 0 0 0 L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|185|1|anti-sense L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|185|1|anti-sense L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|185|1|anti-sense MSMS UPN46_class_I_Rep_3 1 474.28216552734375 2 474.265153 946.515753 NaN NaN NaN NaN NaN NaN NaN 35.369 1 35.369 34.869 35.869 0 0 0 0 0.39518 1 6431 6431 1.8442 0 1 27504 9402 17294 17303 31914 31914 0.040355958225973154 MLTLRLVP 8 Unmodified _MLTLRLVP_ 0 0 0 REV__MLT1K_dup7606|chr7:102407631-102407955:-|1.256093874634295|0.0644570169994451|4.28|151.0|13|1|anti-sense REV__MLT1K_dup7606|chr7:102407631-102407955:-|1.256093874634295|0.0644570169994451|4.28|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79541015625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 65.816 1 69.001 68.501 69.501 3.1853 0 0 0 0.39624 1 15832 15832 9.3474 0 1 + 27505 31795 17295 17304 31915 31915 0.1000848281881872 MLTPETTKEI 10 Unmodified _MLTPETTKEI_ 0 0 0 nc|ENSG801|P63132|HERVK_113_pro nc|ENSG801|P63132|HERVK_113_pro nc|ENSG801|P63132|HERVK_113_pro MULTI-MSMS UPN47_class_I_Rep_1 2 582.3070068359375 2 581.804839 1161.59513 0.37674 0.00021919 -1.1893 -0.00069194 -0.81256 -0.00047275 582.3057536188917 57.792 0.7504 61.229 60.863 61.614 3.437 86 51 3 0 0 0 0.56033 1 13233 13233 3.5965 0 1 138580 27506 16864 17296 17305 31916 31916 0.02079197986086001 MLTYTHTHT 9 Unmodified _MLTYTHTHT_ 0 0 0 REV__L1MC4_dup22613|chr18:57756598-57758024:-|3.171142584488853|0.0450060164704323|6.14|151.0|90|3|anti-sense REV__L1MC4_dup22613|chr18:57756598-57758024:-|3.171142584488853|0.0450060164704323|6.14|151.0|90|3|anti-sense MSMS UPN46_class_I_Rep_3 1 552.7628173828125 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 14.041 1 14.041 13.541 14.541 0 0 0 0 0.39518 1 535 535 1.8442 0 1 + 27507 26883 17297 17306 31917 31917 -0.04063377813895386 MLVKVPKE 8 Unmodified _MLVKVPKE_ 0 0 0 REV__L1MEg2_dup542|chr12:132995952-132996493:-|1.077704553462141|0.0412207763839342|4.71|151.0|8|2|sense REV__L1MEg2_dup542|chr12:132995952-132996493:-|1.077704553462141|0.0412207763839342|4.71|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 471.9515686035156 2 472.285889 942.557224 NaN NaN NaN NaN NaN NaN NaN 102.77 1 102.77 102.27 103.27 0 0 0 0 0.40625 1 25081 25081 2.3027 0 1 + 27508 28793 17298 17307 31918 31918 0.08364776581913702 MLVLLYKV 8 Unmodified _MLVLLYKV_ 0 0 0 L1MA4A_dup163|chr1:84220810-84223360:-|1.8984367368993336|0.0295155491750106|6.01|151.0|124|2|anti-sense L1MA4A_dup163|chr1:84220810-84223360:-|1.8984367368993336|0.0295155491750106|6.01|151.0|124|2|anti-sense L1MA4A_dup163|chr1:84220810-84223360:-|1.8984367368993336|0.0295155491750106|6.01|151.0|124|2|anti-sense MSMS UPN46_class_I_Rep_3 1 489.8061218261719 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 21.429 1 21.429 20.929 21.929 0 0 0 0 0.40746 1 2393 2393 0.69038 0 1 27509 9763 17299 17308 31919 31919 0.10866537621382122 MLVMFVFV 8 Unmodified _MLVMFVFV_ 0 0 0 REV__HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|67|2|anti-sense REV__HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2658386230469 2 493.26611 984.517667 NaN NaN NaN NaN NaN NaN NaN 30.66 1 34.295 33.795 34.795 3.6351 0 0 0 0.40738 1 4519 4519 0.79363 0 1 + 27510 23331 17300 17309 31920 31920 0.0247893330684974 MLVVKHWIV 9 Unmodified _MLVVKHWIV_ 0 0 0 REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|48|1|anti-sense REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|48|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.8370361328125 2 562.83608 1123.65761 NaN NaN NaN NaN NaN NaN NaN 27.724 1 27.724 27.224 28.224 0 0 0 0 0.40038 1 4154 4154 0.6015 0 1 + 27511 26940 17301 17310 31921 31921 0.10072433635559719 MLVVPDFLF 9 Unmodified _MLVVPDFLF_ 0 0 0 ENST00000411631.2_7:72716055-72716139:+|nuORF ENST00000411631.2_7:72716055-72716139:+|nuORF ENST00000411631.2_7:72716055-72716139:+|nuORF MSMS UPN48_class_I_Rep_1 5 540.7951049804688 2 540.793546 1079.57254 NaN NaN NaN NaN NaN NaN NaN 68.393 1 71.845 71.345 72.345 3.4517 0 0 0 0.19137 1 15789 15789 16.942 0 1 27512 6632 17302 17311 31922 31922 0.03593643379099376 MLVWFYATKL 10 Unmodified _MLVWFYATKL_ 0 0 0 REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|219|2|anti-sense REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|219|2|anti-sense MSMS UPN46_class_I_Rep_3 1 636.3471069335938 2 636.346477 1270.6784 NaN NaN NaN NaN NaN NaN NaN 64.473 1 64.473 63.973 64.973 0 0 0 0 0.53105 1 14512 14512 0.45834 0 1 + 27513 29292 17303 17312 31923 31923 0.05388979224562718 MLWLHFLK 8 Unmodified _MLWLHFLK_ 0 0 0 REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|67|3|anti-sense REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.3109741210938 2 544.309698 1086.60484 NaN NaN NaN NaN NaN NaN NaN 62.208 1 65.718 65.218 66.218 3.5104 0 0 0 0.4044 1 13809 13809 4.756 0 1 + 27514 26706 17304 17313 31924 31924 0.06500475572761388 MLWVNMQH 8 Unmodified _MLWVNMQH_ 0 0 0 ERVL-B4-int_dup2987|chr12:76501476-76503145:+|3.75326171702014|0.0251065120362694|7.22|151.0|9|1|sense ERVL-B4-int_dup2987|chr12:76501476-76503145:+|3.75326171702014|0.0251065120362694|7.22|151.0|9|1|sense ERVL-B4-int_dup2987|chr12:76501476-76503145:+|3.75326171702014|0.0251065120362694|7.22|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 529.7481689453125 2 529.749147 1057.48374 NaN NaN NaN NaN NaN NaN NaN 115.33 1 118.83 118.33 119.33 3.5039 0 0 0 0.40604 1 28118 28118 2.5775 0 1 27515 7727 17305 17314 31925 31925 -0.04270095132210372 MLWVSYSC 8 Unmodified _MLWVSYSC_ 0 0 0 ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|34|1|anti-sense ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|34|1|anti-sense ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.71856689453125 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 33.954 1 37.633 37.133 38.133 3.6797 0 0 0 0.40738 1 5343 5343 0.79363 0.10326 1 27516 7706 17306 17315 31926 31926 -0.07480295009008842 MLWVYLIY 8 Unmodified _MLWVYLIY_ 0 0 0 REV__nc|ENSG00000147231|Q6NSI4-2|RADX REV__nc|ENSG00000147231|Q6NSI4-2|RADX MULTI-MSMS UPN47_class_I_Rep_3 4 550.798828125 2 550.796089 1099.57763 0.44331 0.00024417 2.1119 0.0011632 2.5552 0.0014074 550.7972631987445 71.709 0.59105 74.928 74.698 75.289 3.2188 47 45 2 0 0 0 0.82752 2 17612 17612;17616 24.21 6.075 1 80847 + 27517 32007 17307 17316 31927;31928 31927 0.03181947241728267 MLYLCLSFTF 10 Unmodified _MLYLCLSFTF_ 0 0 0 REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|152|2|anti-sense REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|152|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 619.3034057617188 2 619.303421 1236.59229 0.57693 0.00035729 -0.019708 -1.2205E-05 0.55722 0.00034509 619.3031757140169 59.755 0.48421 63.235 63.016 63.501 3.4801 52 37 2 0 0 0 0.56033 1 13119 13119 3.5965 1.098 1 96739 + 27518 24171 17308 17317 31929 31929 -0.01654348672445849 MLYLCLSFTF 10 Unmodified _MLYLCLSFTF_ 0 0 0 REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|152|2|anti-sense REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|152|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.8046875 2 619.303421 1236.59229 0.54996 0.00034059 0.31764 0.00019672 0.8676 0.00053731 619.8051543176532 59.473 0.43676 62.99 62.591 63.028 3.5169 37 28 2 0 0 0 0.46161 1 12964 12964 14.838 4.6877 1 128430 + 27519 24171 17308 17317 31930 31930 -0.01654348672445849 MMATNKIIRG 10 Unmodified _MMATNKIIRG_ 0 0 0 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 REV__nc|ENSG00000100523|Q8NEL9-2|DDHD1 MSMS UPN47_class_I_Rep_3 4 567.807861328125 2 567.809736 1133.60492 NaN NaN NaN NaN NaN NaN NaN 20.789 1 24.138 23.638 24.638 3.3496 0 0 0 0.53105 1 2210 2210 1.4819 0.68827 1 + 27520 18119 17309 17318 31931 31931 0.04346107510446018 MMCCCCCCCIY 11 Unmodified _MMCCCCCCCIY_ 0 0 0 L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense MSMS UPN46_class_I_Rep_3 1 639.658935546875 2 639.658885 1277.30322 NaN NaN NaN NaN NaN NaN NaN 66.144 1 66.144 65.644 66.644 0 0 0 0 0.38417 1 14991 14991 0 0 1 27521 13682 17310 17319 31932 31932 -0.32434171817044444 MMCFFHFACH 10 Unmodified _MMCFFHFACH_ 0 0 0 L1MA1_dup15|chr1:28943672-28944514:+|1.0747212773249886|0.0060419925809079|7.47|151.0|28|3|sense L1MA1_dup15|chr1:28943672-28944514:+|1.0747212773249886|0.0060419925809079|7.47|151.0|28|3|sense L1MA1_dup15|chr1:28943672-28944514:+|1.0747212773249886|0.0060419925809079|7.47|151.0|28|3|sense MSMS UPN47_class_I_Rep_2 3 637.6796875 2 637.242318 1272.47008 NaN NaN NaN NaN NaN NaN NaN 116.46 1 119.95 119.45 120.45 3.4965 0 0 0 0.53105 1 28433 28433 0.45834 0 1 27522 9263 17311 17320 31933 31933 -0.155254122272936 MMCQLKFAD 9 Unmodified _MMCQLKFAD_ 0 0 0 L1MC1_dup8803|chr10:92323226-92324336:-|1.047722532286527|0.020744491379205|5.66|151.0|36|3|sense L1MC1_dup8803|chr10:92323226-92324336:-|1.047722532286527|0.020744491379205|5.66|151.0|36|3|sense L1MC1_dup8803|chr10:92323226-92324336:-|1.047722532286527|0.020744491379205|5.66|151.0|36|3|sense MSMS UPN48_class_I_Rep_1 5 543.7428588867188 2 543.742673 1085.47079 NaN NaN NaN NaN NaN NaN NaN 23.769 1 27.335 26.835 27.835 3.5655 0 0 0 0.40038 1 2528 2528 0.6015 0 1 27523 11202 17312 17321 31934 31934 -0.06852294306600015 MMGLMGVDSL 10 Unmodified _MMGLMGVDSL_ 0 0 0 L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|204|3|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|204|3|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|204|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.2447509765625 2 527.242506 1052.47046 NaN NaN NaN NaN NaN NaN NaN 65.591 1 69.043 68.543 69.543 3.4516 0 0 0 0.53105 1 14934 14934 9.3831 1.473 1 27524 9702 17313 17322 31935 31935 -0.05367714026442627 MMKCVRKK 8 Unmodified _MMKCVRKK_ 0 0 0 REV__L1MA9_dup8862|chr9:96807104-96808633:+|1.4689676103795184|0.0336653211876108|5.45|151.0|49|3|sense REV__L1MA9_dup8862|chr9:96807104-96808633:+|1.4689676103795184|0.0336653211876108|5.45|151.0|49|3|sense MSMS UPN47_class_I_Rep_3 4 512.2845458984375 2 512.284843 1022.55513 NaN NaN NaN NaN NaN NaN NaN 64.689 1 67.868 67.368 68.368 3.1795 0 0 0 0.40746 1 15487 15487 0.69038 0 1 + 27525 25650 17314 17323 31936 31936 0.044757013008165814 MMLLRDYGRY 10 Unmodified _MMLLRDYGRY_ 0 0 0 nc|ENSG00000087995|Q96IZ6-2|METTL2A;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000087995|ENST00000311506|METTL2A nc|ENSG00000087995|Q96IZ6-2|METTL2A nc|ENSG00000087995|Q96IZ6-2|METTL2A MULTI-MSMS UPN47_class_I_Rep_1 2 439.8859558105469 3 439.886259 1316.63695 -0.42389 -0.00018646 -0.14236 -6.2623E-05 -0.56625 -0.00024908 439.8861778204022 25.508 1.5525 29.257 28.896 30.448 3.7495 403 142 4 0 0 0 0.56034 1 3632 3632 3.5871 0 1 1442000 27526 1304 17315 17324 31937 31937 -0.008705248063733961 MMLMRSLI 8 Unmodified _MMLMRSLI_ 0 0 0 HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|98|3|anti-sense HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|98|3|anti-sense HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|98|3|anti-sense MSMS UPN48_class_I_Rep_1 5 497.7652893066406 2 497.765951 993.51735 NaN NaN NaN NaN NaN NaN NaN 114.3 1 117.93 117.43 118.43 3.6301 0 0 0 0.40738 1 27786 27786 0.79363 0 1 27527 7842 17316 17325 31938 31938 0.02033190315353295 MMLYWLYI 8 Unmodified _MMLYWLYI_ 0 0 0 REV__L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|358|3|anti-sense REV__L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|358|3|anti-sense MSMS UPN48_class_I_Rep_1 5 566.78369140625 2 566.782124 1131.5497 NaN NaN NaN NaN NaN NaN NaN 17.095 1 20.621 20.121 21.121 3.5261 0 0 0 0.40738 1 935 935 0.79363 0 1 + 27528 29827 17317 17326 31939 31939 -0.0108169901002384 MMMFRMFK 8 Unmodified _MMMFRMFK_ 0 0 0 REV__ENSG00000241553|ENST00000397261|ARPC4 REV__ENSG00000241553|ENST00000397261|ARPC4 MSMS UPN47_class_I_Rep_3 4 561.2601318359375 2 561.259979 1120.5054 NaN NaN NaN NaN NaN NaN NaN 72.036 1 75.255 74.755 75.755 3.2188 0 0 0 0.40625 1 17709 17709 2.3027 0 1 + 27529 21328 17318 17327 31940 31940 -0.05002749699497144 MMMIIFFNS 9 Unmodified _MMMIIFFNS_ 0 0 0 REV__Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|59|3|sense REV__Tigger1_dup11096|chr18:9188552-9190951:+|1.756546529984414|0.0505197129407257|5.12|150.0|59|3|sense MSMS UPN48_class_I_Rep_2 6 567.2633056640625 2 567.263242 1132.51193 NaN NaN NaN NaN NaN NaN NaN 115.86 1 119.52 119.02 120.02 3.6607 0 0 0 0.4029 1 27741 27741 0 0 1 + 27530 32349 17319 17328 31941 31941 -0.04902533267090803 MMPHPAPW 8 Unmodified _MMPHPAPW_ 0 0 0 L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|224|1|anti-sense L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|224|1|anti-sense L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|224|1|anti-sense MSMS UPN47_class_I_Rep_2 3 483.6465148925781 2 483.719858 965.425164 NaN NaN NaN NaN NaN NaN NaN 72.828 1 76.125 75.625 76.625 3.2971 0 0 0 0.40738 1 17873 17873 0.79363 0 1 27531 14476 17320 17329 31942 31942 -0.058931517066866945 MMPTPDPVPTY 11 Unmodified _MMPTPDPVPTY_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MSMS UPN48_class_I_Rep_1 5 416.8604736328125 3 416.859487 1247.55663 NaN NaN NaN NaN NaN NaN NaN 26.101 1 29.668 29.168 30.168 3.5667 0 0 0 0.38417 1 3150 3150 2.6312 0 1 + 27532 17774 17321 17330 31943 31943 -0.05724430920076884 MMRQQRLMD 9 Unmodified _MMRQQRLMD_ 0 0 0 REV__ENSG00000070778|ENST00000556564|PTPN21 REV__ENSG00000070778|ENST00000556564|PTPN21 MSMS UPN47_class_I_Rep_3 4 604.7903442382812 2 604.788478 1207.5624 NaN NaN NaN NaN NaN NaN NaN 24.682 1 28.032 27.532 28.532 3.3509 0 0 0 0.39518 1 3350 3350 1.8442 0.51471 1 + 27533 17805 17322 17331 31944 31944 -0.03307610889419266 MMRQWPPL 8 Unmodified _MMRQWPPL_ 0 0 0 REV__HERVH-int_dup52|chr1:37908850-37910894:+|2.464929771509813|0.0485889059556893|5.66|151.0|32|2|sense REV__HERVH-int_dup52|chr1:37908850-37910894:+|2.464929771509813|0.0485889059556893|5.66|151.0|32|2|sense MSMS UPN48_class_I_Rep_2 6 529.7677001953125 2 529.76734 1057.52013 NaN NaN NaN NaN NaN NaN NaN 119.87 1 123.53 123.03 124.03 3.6652 0 0 0 0.40738 1 28773 28773 0.79363 0 1 + 27534 23688 17323 17332 31945 31945 -0.006332182354753968 MMTLLASC 8 Unmodified _MMTLLASC_ 0 0 0 L1ME3B_dup4125|chr9:40103209-40104515:-|1.9341164810855669|0.3166925570489746|2.61|151.0|20|2|sense L1ME3B_dup4125|chr9:40103209-40104515:-|1.9341164810855669|0.3166925570489746|2.61|151.0|20|2|sense L1ME3B_dup4125|chr9:40103209-40104515:-|1.9341164810855669|0.3166925570489746|2.61|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 435.1995544433594 2 435.20011 868.385667 NaN NaN NaN NaN NaN NaN NaN 75.055 1 78.545 78.045 79.045 3.49 0 0 0 0.40738 1 17765 17765 0.79363 0 1 27535 12718 17324 17333 31946 31946 -0.05379039772424221 MMVNNDKH 8 Unmodified _MMVNNDKH_ 0 0 0 REV__ENST00000519902.1_1_8:26237308-26237995:-|nuORF REV__ENST00000519902.1_1_8:26237308-26237995:-|nuORF MSMS UPN47_class_I_Rep_2 3 494.71917724609375 2 494.720587 987.426621 NaN NaN NaN NaN NaN NaN NaN 70.765 1 74.048 73.548 74.548 3.2828 0 0 0 0.40604 1 17260 17260 2.5775 0.51773 1 + 27536 22776 17325 17334 31947 31947 -0.06759562408581132 MMVPLLLASWC 11 Unmodified _MMVPLLLASWC_ 0 0 0 ENST00000337959.8_1_22:43267082-43267280:-|nuORF ENST00000337959.8_1_22:43267082-43267280:-|nuORF ENST00000337959.8_1_22:43267082-43267280:-|nuORF MSMS UPN48_class_I_Rep_2 6 632.318603515625 2 632.318548 1262.62254 NaN NaN NaN NaN NaN NaN NaN 30.492 1 34.127 33.627 34.627 3.6351 0 0 0 0.38417 1 4471 4471 0 0 1 27537 6215 17326 17335 31948 31948 0.001736867211320714 MMWDGVGDMS 10 Unmodified _MMWDGVGDMS_ 0 0 0 REV__MER1B_dup2710|chr8:73824550-73824877:-|1.1518915676619557|0.0077503946661688|7.22|151.0|13|1|anti-sense REV__MER1B_dup2710|chr8:73824550-73824877:-|1.1518915676619557|0.0077503946661688|7.22|151.0|13|1|anti-sense MSMS UPN46_class_I_Rep_3 1 564.7103881835938 2 564.71157 1127.40859 NaN NaN NaN NaN NaN NaN NaN 114.58 1 114.58 114.08 115.08 0 0 0 0 0.53105 1 28323 28323 1.6526 0.85899 1 + 27538 31133 17327 17336 31949 31949 -0.15002065445605695 MMWKFINF 8 Unmodified _MMWKFINF_ 0 0 0 nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 nc|ENSG00000067167|Q15629-2|TRAM1 MSMS UPN48_class_I_Rep_3 7 558.7744140625 2 558.772091 1115.52963 NaN NaN NaN NaN NaN NaN NaN 47.604 1 51.238 50.738 51.738 3.6339 0 0 0 0.40404 1 9358 9358 5.2307 0.47466 1 27539 1030 17328 17337 31950 31950 -0.023514499499697195 MNCRELPL 8 Unmodified _MNCRELPL_ 0 0 0 ENSG00000115604|ENST00000233957|IL18R1 ENSG00000115604|ENST00000233957|IL18R1 ENSG00000115604|ENST00000233957|IL18R1 MSMS UPN47_class_I_Rep_1 2 488.2428894042969 2 488.241155 974.467757 NaN NaN NaN NaN NaN NaN NaN 72.111 1 75.491 74.991 75.991 3.3799 0 0 0 0.40643 1 17624 17624 2.0598 0.21551 1 27540 2133 17329 17338 31951 31951 -0.020498013690939842 MNCRELPL 8 Unmodified _MNCRELPL_ 0 0 0 ENSG00000115604|ENST00000233957|IL18R1 ENSG00000115604|ENST00000233957|IL18R1 ENSG00000115604|ENST00000233957|IL18R1 MSMS UPN48_class_I_Rep_3 7 488.2432556152344 2 488.241155 974.467757 NaN NaN NaN NaN NaN NaN NaN 72.341 1 75.867 75.367 76.367 3.5266 0 0 0 0.40643 1 16855 16855 2.0598 0.21551 1 27541 2133 17329 17338 31952 31952 -0.020498013690939842 MNCSMCTK 8 Unmodified _MNCSMCTK_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|251|3|anti-sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|251|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.1721496582031 2 459.171027 916.3275 NaN NaN NaN NaN NaN NaN NaN 96.297 1 96.297 95.797 96.797 0 0 0 0 0.40738 1 23412 23412 0.79363 0.10326 1 + 27542 23833 17330 17339 31953 31953 -0.13401044689351238 MNFFFKFH 8 Unmodified _MNFFFKFH_ 0 0 0 REV__L1MB3_dup2043|chr2:99471321-99472544:+|1.2223331368691783|0.1065160830934384|3.52|151.0|82|3|anti-sense REV__L1MB3_dup2043|chr2:99471321-99472544:+|1.2223331368691783|0.1065160830934384|3.52|151.0|82|3|anti-sense MSMS UPN47_class_I_Rep_2 3 559.2681274414062 2 559.26803 1116.52151 NaN NaN NaN NaN NaN NaN NaN 18.592 1 21.982 21.482 22.482 3.3898 0 0 0 0.40746 1 1597 1597 0.69038 0 1 + 27543 25860 17331 17340 31954 31954 -0.03209260875064501 MNFHFFDSV 9 Unmodified _MNFHFFDSV_ 0 0 0 REV__L1MB8_dup2804|chr3:49778938-49779641:-|1.8766308585100704|0.0255734928216526|6.2|151.0|51|3|anti-sense REV__L1MB8_dup2804|chr3:49778938-49779641:-|1.8766308585100704|0.0255734928216526|6.2|151.0|51|3|anti-sense MSMS UPN47_class_I_Rep_1 2 572.2479248046875 2 572.250034 1142.48552 NaN NaN NaN NaN NaN NaN NaN 20.332 1 23.944 23.444 24.444 3.6118 0 0 0 0.39518 1 2021 2021 1.8442 0.36234 1 + 27544 26402 17332 17341 31955 31955 -0.08002762842602351 MNFQPRMLY 9 Unmodified _MNFQPRMLY_ 0 0 0 L1ME1_dup12605|chr6:156139926-156140612:-|3.966267740361334|0.02723760027633|7.19|149.0|23|3|sense L1ME1_dup12605|chr6:156139926-156140612:-|3.966267740361334|0.02723760027633|7.19|149.0|23|3|sense L1ME1_dup12605|chr6:156139926-156140612:-|3.966267740361334|0.02723760027633|7.19|149.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 600.2864379882812 2 600.288637 1198.56272 NaN NaN NaN NaN NaN NaN NaN 49.394 1 52.629 52.129 53.129 3.2345 0 0 0 0.39518 1 10823 10823 1.8442 0.19162 1 27545 12198 17333 17342 31956 31956 -0.028618678979000833 MNHSNPIQPP 10 Unmodified _MNHSNPIQPP_ 0 0 0 REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF MSMS UPN48_class_I_Rep_1 5 567.7703247070312 2 567.771665 1133.52878 NaN NaN NaN NaN NaN NaN NaN 30.938 1 34.48 33.98 34.98 3.542 0 0 0 0.53105 1 4512 4512 1.4819 0.68827 1 + 27546 17508 17334 17343 31957 31957 -0.032645730653030114 MNIHFIFW 8 Unmodified _MNIHFIFW_ 0 0 0 L1MC3_dup4283|chr5:150754976-150755960:+|2.553491951541562|0.0789223687741001|5.02|151.0|63|2|anti-sense L1MC3_dup4283|chr5:150754976-150755960:+|2.553491951541562|0.0789223687741001|5.02|151.0|63|2|anti-sense L1MC3_dup4283|chr5:150754976-150755960:+|2.553491951541562|0.0789223687741001|5.02|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_2 3 554.2756958007812 2 554.275855 1106.53716 NaN NaN NaN NaN NaN NaN NaN 48.045 1 51.394 50.894 51.894 3.3492 0 0 0 0.40581 1 10352 10352 2.8892 0.58649 1 27547 11340 17335 17344 31958 31958 -0.011849743580341965 MNINFYHCY 9 Unmodified _MNINFYHCY_ 0 0 0 L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|15|1|sense L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|15|1|sense L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 602.7498779296875 2 602.749344 1203.48414 NaN NaN NaN NaN NaN NaN NaN 116.06 1 119.72 119.22 120.22 3.6607 0 0 0 0.40038 1 27794 27794 0.6015 0 1 27548 8825 17336 17345 31959 31959 -0.10946720203014593 MNIVEIIRDL 10 Unmodified _MNIVEIIRDL_ 0 0 0 Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|16|1|sense Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|16|1|sense Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|16|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 405.5248718261719 3 405.897041 1214.66929 -0.10687 -4.3379E-05 1.9576 0.0007946 1.8508 0.00075122 405.8980375162694 74.649 0.044601 78.139 78.125 78.169 3.49 4 2 2 0 0 0 0.84575 1 17654 17654 0.77653 0.078866 1 47461 27549 33100 17337 17346 31960 31960 0.0705458586826353 MNKLTLPIP 9 Unmodified _MNKLTLPIP_ 0 0 0 ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 ENSG00000130758|ENST00000253055|MAP3K10 MULTI-MSMS UPN46_class_I_Rep_3 1 513.8049926757812 2 513.804445 1025.59434 0.32197 0.00016543 0.98391 0.00050554 1.3059 0.00067097 513.8050799030642 91.906 0.16766 91.906 91.888 92.056 0 24 17 4 0 0 0 0.47197 1 22228 22228 3.5965 0.70727 1 597280 27550 2678 17338 17347 31961 31961 0.08256448127690419 MNKMKILI 8 Unmodified _MNKMKILI_ 0 0 0 L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|39|3|sense L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|39|3|sense L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 495.79541015625 2 495.795566 989.576579 NaN NaN NaN NaN NaN NaN NaN 116.99 1 120.43 119.93 120.93 3.4425 0 0 0 0.40746 1 28805 28805 0.69038 0 1 27551 9058 17339 17348 31962 31962 0.08137409601192758 MNMKKYYRL 9 Unmodified _MNMKKYYRL_ 0 0 0 REV__ENST00000443503.6_2_3:38022755-38022872:+|nuORF REV__ENST00000443503.6_2_3:38022755-38022872:+|nuORF MSMS UPN46_class_I_Rep_3 1 623.8248291015625 2 623.825386 1245.63622 NaN NaN NaN NaN NaN NaN NaN 106.04 1 106.04 105.54 106.54 0 0 0 0 0.4007 1 25860 25860 0.52476 0 1 + 27552 22342 17340 17349 31963 31963 0.023226805445574428 MNPQDIML 8 Unmodified _MNPQDIML_ 0 0 0 L1MB1_dup4974|chr14:39407368-39407952:-|1.0943523334785472|0.0624970992068019|4.13|151.0|2|1|sense L1MB1_dup4974|chr14:39407368-39407952:-|1.0943523334785472|0.0624970992068019|4.13|151.0|2|1|sense L1MB1_dup4974|chr14:39407368-39407952:-|1.0943523334785472|0.0624970992068019|4.13|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 481.227783203125 2 481.227713 960.440874 NaN NaN NaN NaN NaN NaN NaN 20.142 1 23.792 23.292 24.292 3.6497 0 0 0 0.40738 1 1675 1675 0.79363 0 1 27553 10187 17341 17350 31964 31964 -0.04092909980306558 MNQALYLNK 9 Unmodified _MNQALYLNK_ 0 0 0 REV__nc|ENSG00000010626|Q53EV4-2|LRRC23 REV__nc|ENSG00000010626|Q53EV4-2|LRRC23 MSMS UPN48_class_I_Rep_2 6 547.7874145507812 2 547.786784 1093.55902 NaN NaN NaN NaN NaN NaN NaN 44.956 1 48.717 48.217 49.217 3.7617 0 0 0 0.38478 1 8628 8628 4.3292 0.73274 1 + 27554 17572 17342 17351 31965 31965 0.015977855998698942 MNQQFTPR 8 Unmodified _MNQQFTPR_ 0 0 0 L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|52|2|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|52|2|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 511.24530029296875 2 511.247826 1020.4811 NaN NaN NaN NaN NaN NaN NaN 33.014 1 36.469 35.969 36.969 3.4547 0 0 0 0.40659 1 5794 5794 1.8442 1.0506 1 27555 12444 17343 17352 31966 31966 -0.028322272655032066 MNRIYCWRK 9 Unmodified _MNRIYCWRK_ 0 0 0 ENST00000312475.4_1_15:89008823-89008904:-|nuORF ENST00000312475.4_1_15:89008823-89008904:-|nuORF ENST00000312475.4_1_15:89008823-89008904:-|nuORF MSMS UPN47_class_I_Rep_1 2 635.3202514648438 2 635.320802 1268.62705 NaN NaN NaN NaN NaN NaN NaN 72.925 1 76.305 75.805 76.805 3.3799 0 0 0 0.4007 1 17875 17875 0.52476 0.066424 1 27556 6112 17344 17353 31967 31967 0.0034833197885291156 MPAWRRKW 8 Unmodified _MPAWRRKW_ 0 0 0 ENST00000444508.5_1_2:217277387-217279388:+|nuORF ENST00000444508.5_1_2:217277387-217279388:+|nuORF ENST00000444508.5_1_2:217277387-217279388:+|nuORF MSMS UPN47_class_I_Rep_3 4 565.80810546875 2 565.805645 1129.59674 NaN NaN NaN NaN NaN NaN NaN 88.009 1 91.397 90.897 91.897 3.3873 0 0 0 0.40604 1 22066 22066 2.5775 0.73324 1 27557 6784 17345 17354 31968 31968 0.03712341375990036 MPDFKIYYK 9 Unmodified _MPDFKIYYK_ 0 0 0 L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|5|1|sense L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|5|1|sense L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 402.2057800292969 3 402.207216 1203.59982 NaN NaN NaN NaN NaN NaN NaN 18.274 1 21.846 21.346 22.346 3.5727 0 0 0 0.4007 1 1500 1500 0.23584 0 1 27558 8758 17346 17355 31969 31969 0.006161269194763008 MPEIMNQY 8 Unmodified _MPEIMNQY_ 0 0 0 L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|8|1|sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|8|1|sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.7977294921875 2 513.225171 1024.43579 0.27597 0.00014163 0.20784 0.00010667 0.48381 0.0002483 513.2249301372854 69.995 0.16985 73.199 73.104 73.274 3.2044 20 13 2 0 0 0 0.82752 1 17083 17083 7.9102 0 1 34873 27559 9231 17347 17356 31970 31970 -0.07545213842900012 MPEIMNQY 8 Unmodified _MPEIMNQY_ 0 0 0 L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|8|1|sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|8|1|sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.225341796875 2 513.225171 1024.43579 0.28475 0.00014614 -0.13622 -6.9909E-05 0.14854 7.6234E-05 513.225014652466 69.954 0.90036 73.413 73.07 73.971 3.4598 122 71 2 0 0 0 0.82752 6 16193 16193;16232;16273;16311;16348;16390 30.225 30.225 1 267830 27560 9231 17347 17356 31971;31972;31973;31974;31975;31976 31971 -0.07545213842900012 MPELFFYY 8 Unmodified _MPELFFYY_ 0 0 0 ENST00000367634.6_1_1:178886464-178886575:+|nuORF ENST00000367634.6_1_1:178886464-178886575:+|nuORF ENST00000367634.6_1_1:178886464-178886575:+|nuORF MSMS UPN47_class_I_Rep_1 2 555.2515258789062 2 555.254254 1108.49396 NaN NaN NaN NaN NaN NaN NaN 53.937 1 57.465 56.965 57.965 3.5278 0 0 0 0.40404 1 12126 12126 5.2307 0.90143 1 27561 6355 17348 17357 31977 31977 -0.05595208925979023 MPELFFYY 8 Unmodified _MPELFFYY_ 0 0 0 ENST00000367634.6_1_1:178886464-178886575:+|nuORF ENST00000367634.6_1_1:178886464-178886575:+|nuORF ENST00000367634.6_1_1:178886464-178886575:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.2520751953125 2 555.254254 1108.49396 NaN NaN NaN NaN NaN NaN NaN 54.217 1 57.536 57.036 58.036 3.3187 0 0 0 0.40625 1 12239 12239 2.3027 0 1 27562 6355 17348 17357 31978 31978 -0.05595208925979023 MPEMSPRRL 9 Unmodified _MPEMSPRRL_ 0 0 0 ENST00000360270.6_1_X:64959612-64959651:+|nuORF ENST00000360270.6_1_X:64959612-64959651:+|nuORF ENST00000360270.6_1_X:64959612-64959651:+|nuORF MSMS UPN47_class_I_Rep_2 3 558.7871704101562 2 558.786261 1115.55797 NaN NaN NaN NaN NaN NaN NaN 112.06 1 115.58 115.08 116.08 3.5226 0 0 0 0.39518 1 27294 27294 1.8442 0 1 27563 6314 17349 17358 31979 31979 0.0048124795932835696 MPFHNTHL 8 Unmodified _MPFHNTHL_ 0 0 0 REV__L1M7_dup320|chr2:47882048-47882662:-|2.2347797410803625|0.0129238734017594|7.43|151.0|44|3|anti-sense REV__L1M7_dup320|chr2:47882048-47882662:-|2.2347797410803625|0.0129238734017594|7.43|151.0|44|3|anti-sense MSMS UPN48_class_I_Rep_2 6 498.7388610839844 2 498.739637 995.464721 NaN NaN NaN NaN NaN NaN NaN 37.338 1 41.04 40.54 41.54 3.7021 0 0 0 0.40643 1 6379 6379 2.0598 0 1 + 27564 24738 17350 17359 31980 31980 -0.0331930843160535 MPFLVGVVI 9 Unmodified _MPFLVGVVI_ 0 0 0 REV__ENST00000520448.5_1_8:24199244-24211914:+|nuORF REV__ENST00000520448.5_1_8:24199244-24211914:+|nuORF MSMS UPN48_class_I_Rep_2 6 487.7908020019531 2 487.790807 973.56706 NaN NaN NaN NaN NaN NaN NaN 74.097 1 77.675 77.175 78.175 3.5779 0 0 0 0.40038 1 17426 17426 0.6015 0 1 + 27565 17653 17351 17360 31981 31981 0.07921964587308139 MPFPLAPE 8 Unmodified _MPFPLAPE_ 0 0 0 ENST00000398073.6_1_12:58214981-58215023:-|nuORF ENST00000398073.6_1_12:58214981-58215023:-|nuORF ENST00000398073.6_1_12:58214981-58215023:-|nuORF MSMS UPN47_class_I_Rep_1 2 451.5603942871094 2 451.228039 900.441526 NaN NaN NaN NaN NaN NaN NaN 34.461 1 38.147 37.647 38.647 3.6859 0 0 0 0.40738 1 6204 6204 0.79363 0 1 27566 6580 17352 17361 31982 31982 -0.012677472689460956 MPFPLAPE 8 Unmodified _MPFPLAPE_ 0 0 0 ENST00000398073.6_1_12:58214981-58215023:-|nuORF ENST00000398073.6_1_12:58214981-58215023:-|nuORF ENST00000398073.6_1_12:58214981-58215023:-|nuORF MSMS UPN47_class_I_Rep_3 4 451.22650146484375 2 451.228039 900.441526 NaN NaN NaN NaN NaN NaN NaN 30.814 1 34.126 33.626 34.626 3.3116 0 0 0 0.40738 1 5169 5169 0.79363 0 1 27567 6580 17352 17361 31983 31983 -0.012677472689460956 MPFPLAPE 8 Unmodified _MPFPLAPE_ 0 0 0 ENST00000398073.6_1_12:58214981-58215023:-|nuORF ENST00000398073.6_1_12:58214981-58215023:-|nuORF ENST00000398073.6_1_12:58214981-58215023:-|nuORF MSMS UPN47_class_I_Rep_3 4 451.2266540527344 2 451.228039 900.441526 NaN NaN NaN NaN NaN NaN NaN 31.063 1 34.373 33.873 34.873 3.31 0 0 0 0.40738 1 5244 5244 0.79363 0 1 27568 6580 17352 17361 31984 31984 -0.012677472689460956 MPGCFGLYT 9 Unmodified _MPGCFGLYT_ 0 0 0 L1MEg_dup1145|chr1:246584808-246585254:-|1.048869413170849|0.0129305480524021|6.34|151.0|20|2|anti-sense L1MEg_dup1145|chr1:246584808-246585254:-|1.048869413170849|0.0129305480524021|6.34|151.0|20|2|anti-sense L1MEg_dup1145|chr1:246584808-246585254:-|1.048869413170849|0.0129305480524021|6.34|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_2 3 494.7347412109375 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 60.234 1 63.507 63.007 64.007 3.2731 0 0 0 0.39518 1 14080 14080 1.8442 1.0506 1 27569 13355 17353 17362 31985 31985 -0.07480295009008842 MPGHQAVMQLD 11 Unmodified _MPGHQAVMQLD_ 0 0 0 ENST00000372889.5_1_20:43227313-43227469:+|nuORF ENST00000372889.5_1_20:43227313-43227469:+|nuORF ENST00000372889.5_1_20:43227313-43227469:+|nuORF MSMS UPN47_class_I_Rep_3 4 613.8064575195312 2 613.786458 1225.55836 NaN NaN NaN NaN NaN NaN NaN 63.163 1 66.332 65.832 66.832 3.1698 0 0 0 0.38417 1 15026 15026 4.897 0 1 27570 6405 17354 17363 31986 31986 -0.045393771114959236 MPGIPLTGLV 10 Unmodified _MPGIPLTGLV_ 0 0 0 ENST00000480022.1_1_20:40033235-40042188:-|nuORF;ENSG00000124177|ENST00000373233|CHD6 ENST00000480022.1_1_20:40033235-40042188:-|nuORF ENST00000480022.1_1_20:40033235-40042188:-|nuORF MSMS UPN48_class_I_Rep_3 7 499.28900146484375 2 499.291171 996.567789 NaN NaN NaN NaN NaN NaN NaN 43.289 1 46.927 46.427 47.427 3.6385 0 0 0 0.53105 1 8037 8037 1.8442 1.0506 1 27571 2449 17355 17364 31987 31987 0.06936759236350554 MPHIKFGY 8 Unmodified _MPHIKFGY_ 0 0 0 REV__ENSG00000204435|ENST00000375882|CSNK2B REV__ENSG00000204435|ENST00000375882|CSNK2B MSMS UPN48_class_I_Rep_1 5 496.75592041015625 2 496.754756 991.494958 NaN NaN NaN NaN NaN NaN NaN 36.674 1 40.181 39.681 40.681 3.507 0 0 0 0.39624 1 6148 6148 9.3474 0 1 + 27572 21194 17356 17365 31988 31988 -0.0011294976641238463 MPHIKFGY 8 Unmodified _MPHIKFGY_ 0 0 0 REV__ENSG00000204435|ENST00000375882|CSNK2B REV__ENSG00000204435|ENST00000375882|CSNK2B MSMS UPN48_class_I_Rep_3 7 496.7561340332031 2 496.754756 991.494958 NaN NaN NaN NaN NaN NaN NaN 36.142 1 39.809 39.309 40.309 3.6667 0 0 0 0.40364 1 5946 5946 5.7604 0 1 + 27573 21194 17356 17365 31989 31989 -0.0011294976641238463 MPHRRHVT 8 Unmodified _MPHRRHVT_ 0 0 0 REV__ENST00000378980.7_1_9:34564791-34581145:-|nuORF REV__ENST00000378980.7_1_9:34564791-34581145:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 516.7764282226562 2 517.277252 1032.53995 -0.12801 -6.6215E-05 3.3569 0.0017364 3.2289 0.0016702 517.2786097222103 41.256 0.11511 44.494 44.47 44.585 3.2372 13 10 2 0 0 0 0.72333 1 8379 8379 2.5775 0.27475 1 41733 + 27574 22035 17357 17366 31990 31990 0.024982938194852977 MPKKLVYI 8 Unmodified _MPKKLVYI_ 0 0 0 REV__L1MC4a_dup6994|chr11:94473596-94474211:+|1.306957287709086|0.1864379474607717|2.81|151.0|45|3|anti-sense REV__L1MC4a_dup6994|chr11:94473596-94474211:+|1.306957287709086|0.1864379474607717|2.81|151.0|45|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 495.79718017578125 2 496.304081 990.59361 0.26934 0.00013367 0.33938 0.00016844 0.60872 0.00030211 496.30414154562806 75.686 0.075897 79.007 78.972 79.048 3.3216 9 6 2 0 0 0 0.72333 1 18690 18690 0.79363 0 1 33194 + 27575 27013 17358 17367 31991 31991 0.09793653478641318 MPKKLVYI 8 Unmodified _MPKKLVYI_ 0 0 0 REV__L1MC4a_dup6994|chr11:94473596-94474211:+|1.306957287709086|0.1864379474607717|2.81|151.0|45|3|anti-sense REV__L1MC4a_dup6994|chr11:94473596-94474211:+|1.306957287709086|0.1864379474607717|2.81|151.0|45|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 496.304081 990.59361 0.21015 0.0001043 -0.072971 -3.6216E-05 0.13718 6.8083E-05 496.30397121067625 75.791 0.10129 79.291 79.24 79.341 3.4996 0.14187 -0.00024115 NaN 0.79363 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 47405 + 27576 27013 17358 17367 0.09793653478641318 MPKKNRIA 8 Unmodified _MPKKNRIA_ 0 0 0 ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5 ENSG00000124614|ENST00000648437|RPS10 ENSG00000124614|ENST00000648437|RPS10 MSMS UPN47_class_I_Rep_2 3 479.28631591796875 2 479.286754 956.558955 NaN NaN NaN NaN NaN NaN NaN 13.586 1 16.974 16.474 17.474 3.388 0 0 0 0.40746 1 360 360 0.69038 0 1 27577 2477 17359 17368 31992 31992 0.0789383039053746 MPKPLLFHIV 10 Unmodified _MPKPLLFHIV_ 0 0 0 L1M4_dup10739|chrX:47949765-47952049:+|1.0283277804292374|0.0442919580532382|4.54|151.0|28|1|sense L1M4_dup10739|chrX:47949765-47952049:+|1.0283277804292374|0.0442919580532382|4.54|151.0|28|1|sense L1M4_dup10739|chrX:47949765-47952049:+|1.0283277804292374|0.0442919580532382|4.54|151.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.8563232421875 2 597.857012 1193.69947 0.43327 0.00025903 -0.99348 -0.00059396 -0.56021 -0.00033493 597.8560557878972 83.345 0.54756 86.932 86.464 87.012 3.5871 107 63 2 0 0 0 0.56309 1 19885 19885 1.6526 0.32309 1 94377 27578 8822 17360 17369 31993 31993 0.11036989324088609 MPKRVVVY 8 Unmodified _MPKRVVVY_ 0 0 0 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 MSMS UPN48_class_I_Rep_1 5 496.2922058105469 2 496.291505 990.568457 NaN NaN NaN NaN NaN NaN NaN 97.797 1 101.41 100.91 101.91 3.6088 0 0 0 0.40738 1 23591 23591 0.79363 0 1 27579 2527 17361 17370 31994 31994 0.0727959867606387 MPLGWNLL 8 Unmodified _MPLGWNLL_ 0 0 0 ENST00000261275.4_2_15:29413103-29413565:-|nuORF ENST00000261275.4_2_15:29413103-29413565:-|nuORF ENST00000261275.4_2_15:29413103-29413565:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7959899902344 2 472.257131 942.499709 NaN NaN NaN NaN NaN NaN NaN 107.26 1 110.93 110.43 111.43 3.6724 0 0 0 0.4032 1 26277 26277 6.3541 1.5981 1 27580 5956 17362 17371 31995 31995 0.02615934376342466 MPLISSSPKLS 11 Unmodified _MPLISSSPKLS_ 0 0 0 ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63683420-63684509:+|nuORF;ENST00000554011.5_1_14:57675329-57698504:-|nuORF ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 MSMS UPN46_class_I_Rep_3 1 580.8099975585938 2 580.323199 1158.63185 NaN NaN NaN NaN NaN NaN NaN 43.34 1 43.34 42.84 43.84 0 0 0 0 0.38417 1 8647 8647 1.0715 0 1 27581 1071 17363 17372 31996 31996 0.05887494602643528 MPLLRGHS 8 Unmodified _MPLLRGHS_ 0 0 0 REV__MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|19|2|anti-sense REV__MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_2 6 455.7500915527344 2 455.750005 909.485456 NaN NaN NaN NaN NaN NaN NaN 25.452 1 29.088 28.588 29.588 3.6363 0 0 0 0.40738 1 3103 3103 0.79363 0 1 + 27582 31636 17364 17373 31997 31997 0.027092819480685648 MPLTPEPP 8 Unmodified _MPLTPEPP_ 0 0 0 ENSG00000185905|ENST00000329410|C16orf54 ENSG00000185905|ENST00000329410|C16orf54 ENSG00000185905|ENST00000329410|C16orf54 MSMS UPN47_class_I_Rep_1 2 441.22607421875 2 441.225497 880.43644 NaN NaN NaN NaN NaN NaN NaN 103.48 1 107.26 106.76 107.76 3.7788 0 0 0 0.40404 1 25442 25442 5.2307 0 1 27583 5127 17365 17374 31998 31998 -0.00856051131552249 MPLTRSRRPR 10 Unmodified _MPLTRSRRPR_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MSMS UPN46_class_I_Rep_3 1 635.369873046875 2 635.369672 1268.72479 NaN NaN NaN NaN NaN NaN NaN 99.414 1 99.414 98.914 99.914 0 0 0 0 0.53105 1 24218 24218 1.1933 0.59184 1 27584 3892 17366 17375 31999 31999 0.1011785689925091 MPMPLSKMRF 10 Unmodified _MPMPLSKMRF_ 0 0 0 REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|242|2|anti-sense REV__L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|242|2|anti-sense MSMS UPN47_class_I_Rep_3 4 619.31640625 2 619.31634 1236.61813 NaN NaN NaN NaN NaN NaN NaN 67.23 1 70.421 69.921 70.921 3.1914 0 0 0 0.53105 1 16266 16266 1.6526 1.0511 1 + 27585 30084 17367 17376 32000 32000 0.00928222298171022 MPMWSARA 8 Unmodified _MPMWSARA_ 0 0 0 REV__ENSG00000105697|ENST00000222304|HAMP REV__ENSG00000105697|ENST00000222304|HAMP MSMS UPN48_class_I_Rep_1 5 475.2228698730469 2 475.222765 948.430978 NaN NaN NaN NaN NaN NaN NaN 15.74 1 19.258 18.758 19.758 3.5184 0 0 0 0.40625 1 669 669 2.3027 0 1 + 27586 18303 17368 17377 32001 32001 -0.04530053195014716 MPRFFFRC 8 Unmodified _MPRFFFRC_ 0 0 0 ENST00000349792.9_1_1:151171082-151171205:+|nuORF ENST00000349792.9_1_1:151171082-151171205:+|nuORF ENST00000349792.9_1_1:151171082-151171205:+|nuORF MSMS UPN47_class_I_Rep_1 2 552.2699584960938 2 552.267507 1102.52046 NaN NaN NaN NaN NaN NaN NaN 59.232 1 62.649 62.149 63.149 3.4171 0 0 0 0.40746 1 13738 13738 0.69038 0.088878 1 27587 6269 17369 17378 32002 32002 -0.026697985156260984 MPRHTQEQ 8 Unmodified _MPRHTQEQ_ 0 0 0 REV__L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|1|1|sense REV__L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 513.7430419921875 2 513.742908 1025.47126 NaN NaN NaN NaN NaN NaN NaN 36.085 1 39.497 38.997 39.997 3.4114 0 0 0 0.40604 1 6729 6729 2.5775 0 1 + 27588 29016 17370 17379 32003 32003 -0.040454152708889524 MPRYYEKK 8 Unmodified _MPRYYEKK_ 0 0 0 REV__L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|1|1|sense REV__L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 557.7891845703125 2 557.789327 1113.5641 NaN NaN NaN NaN NaN NaN NaN 112.5 1 116.17 115.67 116.67 3.6648 0 0 0 0.40625 1 26807 26807 2.3027 0 1 + 27589 24155 17371 17380 32004 32004 0.01186089462498785 MPTCIDRQY 9 Unmodified _MPTCIDRQY_ 0 0 0 REV__L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|44|3|sense REV__L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.7537841796875 2 563.754627 1125.4947 0.046776 2.637E-05 -1.0176 -0.00057369 -0.97085 -0.00054732 563.7540093324546 27.246 0.63335 30.744 30.459 31.093 3.4986 80 52 2 0 0 0 0.41259 1 4089 4089 7.2892 0 1 92250 + 27590 24769 17372 17381 32005 32005 -0.06302737548571713 MPTCIDRQY 9 Unmodified _MPTCIDRQY_ 0 0 0 REV__L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|44|3|sense REV__L1MA4A_dup4125|chr10:45482783-45484201:+|1.855065916939514|0.0546913642527197|5.08|150.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.7550659179688 2 563.754627 1125.4947 -0.22659 -0.00012774 -0.57097 -0.00032188 -0.79755 -0.00044962 563.7542917368877 27.366 0.53874 30.708 30.433 30.972 3.3422 96 46 3 0 0 0 0.17468 1 4100 4100 23.148 0 1 112610 + 27591 24769 17372 17381 32006 32006 -0.06302737548571713 MPTECYCMQ 9 Unmodified _MPTECYCMQ_ 0 0 0 L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|20|2|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|20|2|sense L1MC3_dup7211|chrX:46865940-46867092:-|2.2622217800201168|0.0666659025697025|5.08|151.0|20|2|sense MSMS UPN47_class_I_Rep_1 2 553.19580078125 2 553.194699 1104.37484 NaN NaN NaN NaN NaN NaN NaN 116.14 1 119.74 119.24 120.24 3.5943 0 0 0 0.4007 1 28756 28756 0.52476 0.12405 1 27592 11362 17373 17382 32007 32007 -0.17316810209013056 MPTLLSTTIL 10 Unmodified _MPTLLSTTIL_ 0 0 0 nc|ENSG00000112062|Q16539-4|MAPK14 nc|ENSG00000112062|Q16539-4|MAPK14 nc|ENSG00000112062|Q16539-4|MAPK14 MSMS UPN48_class_I_Rep_3 7 545.3170166015625 2 545.314843 1088.61513 NaN NaN NaN NaN NaN NaN NaN 84.204 1 87.932 87.432 88.432 3.7281 0 0 0 0.53105 1 19981 19981 3.5965 0.31518 1 27593 16661 17374 17383 32008 32008 0.07436993716692086 MPTMRLLSF 9 2 Oxidation (M) _M(Oxidation (M))PTM(Oxidation (M))RLLSF_ M(1)PTM(1)RLLSF M(48)PTM(48)RLLSF 0 0 2 ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000532074.5_1_1:155984857-155990687:-|nuORF ENST00000532074.5_1_1:155984857-155990687:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 564.2830200195312 2 564.28302 1126.55149 0.30007 0.00016932 -0.89911 -0.00050735 -0.59905 -0.00033803 564.2828453580687 52.561 0.791 56.12 55.866 56.657 3.5585 94 52 3 0 0 0 0.053261 1 11722 11722 47.594 19.966 1 302120 27594 6364 17375 17384 32009 32009 175;176 -0.0067268999205225555 MPVIPALWDC 10 Unmodified _MPVIPALWDC_ 0 0 0 AluJb_dup97407|chr15:64526617-64526950:-|1.4684171784391886|0.0115087318182329|7.0|151.0|1|1|sense AluJb_dup97407|chr15:64526617-64526950:-|1.4684171784391886|0.0115087318182329|7.0|151.0|1|1|sense AluJb_dup97407|chr15:64526617-64526950:-|1.4684171784391886|0.0115087318182329|7.0|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 572.7825927734375 2 572.780113 1143.54567 NaN NaN NaN NaN NaN NaN NaN 17.787 1 17.787 17.287 18.287 0 0 0 0 0.53105 1 1454 1454 1.6526 0.45928 1 27595 82 17376 17385 32010 32010 -0.020357885037356027 MPVKFFYYD 9 Unmodified _MPVKFFYYD_ 0 0 0 REV__Cheshire_dup930|chr16:68152681-68153116:+|1.0912355328578565|0.012385889100812|6.46|151.0|31|3|anti-sense REV__Cheshire_dup930|chr16:68152681-68153116:+|1.0912355328578565|0.012385889100812|6.46|151.0|31|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 605.772705078125 2 605.286085 1208.55762 0.48309 0.00029241 -0.67791 -0.00041033 -0.19481 -0.00011792 605.2858869422231 51.043 0.87966 54.381 54.016 54.896 3.3386 88 46 3 0 0 0 0.46434 1 11179 11179 4.3292 0.73274 1 144820 + 27596 17418 17377 17386 32011 32011 -0.03831848488880496 MPVMCVKY 8 Unmodified _MPVMCVKY_ 0 0 0 REV__ENSG00000125848|ENST00000341420|FLRT3 REV__ENSG00000125848|ENST00000341420|FLRT3 MSMS UPN47_class_I_Rep_2 3 485.7320251464844 2 485.731577 969.448602 NaN NaN NaN NaN NaN NaN NaN 28.08 1 31.579 31.079 32.079 3.4986 0 0 0 0.40625 1 4308 4308 2.3027 0.24298 1 + 27597 18843 17378 17387 32012 32012 -0.037344739843661046 MPWKQRKK 8 Unmodified _MPWKQRKK_ 0 0 0 REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|61|3|sense REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|61|3|sense MSMS UPN47_class_I_Rep_3 4 551.7481689453125 2 551.321128 1100.6277 NaN NaN NaN NaN NaN NaN NaN 114.13 1 117.62 117.12 118.12 3.4963 0 0 0 0.40746 1 28012 28012 0.69038 0 1 + 27598 27378 17379 17388 32013 32013 0.08141494690244144 MPWLPWIFN 9 Unmodified _MPWLPWIFN_ 0 0 0 L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|62|1|anti-sense L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|62|1|anti-sense L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_1 2 602.3048706054688 2 602.304613 1202.59467 NaN NaN NaN NaN NaN NaN NaN 66.701 1 70.058 69.558 70.558 3.3576 0 0 0 0.40038 1 15994 15994 0.6015 0 1 27599 13564 17380 17389 32014 32014 0.0014786784754505788 MPWVFIGRQ 9 Unmodified _MPWVFIGRQ_ 0 0 0 REV__ENSG00000136542|ENST00000259056|GALNT5 REV__ENSG00000136542|ENST00000259056|GALNT5 MSMS UPN47_class_I_Rep_2 3 567.30126953125 2 567.299862 1132.58517 NaN NaN NaN NaN NaN NaN NaN 37.1 1 40.498 39.998 40.998 3.3988 0 0 0 0.39518 1 7035 7035 1.8442 0.36234 1 + 27600 19190 17381 17390 32015 32015 0.02418099562032694 MPWVWPCTR 9 Unmodified _MPWVWPCTR_ 0 0 0 ENST00000566786.5_1_16:56903718-56906311:+|nuORF ENST00000566786.5_1_16:56903718-56906311:+|nuORF ENST00000566786.5_1_16:56903718-56906311:+|nuORF MSMS UPN48_class_I_Rep_2 6 588.2783203125 2 588.278072 1174.54159 NaN NaN NaN NaN NaN NaN NaN 39.597 1 43.327 42.827 43.827 3.7297 0 0 0 0.40038 1 7045 7045 0.6015 0 1 27601 7493 17382 17391 32016 32016 -0.038698332067951924 MPYLDDLTY 9 Unmodified _MPYLDDLTY_ 0 0 0 REV__ENSG00000117139|ENST00000367265|KDM5B REV__ENSG00000117139|ENST00000367265|KDM5B MSMS UPN47_class_I_Rep_3 4 565.7584838867188 2 565.757358 1129.50016 NaN NaN NaN NaN NaN NaN NaN 64.673 1 67.852 67.352 68.352 3.1795 0 0 0 0.29868 1 15482 15482 10.824 2.9138 1 + 27602 18624 17383 17392 32017 32017 -0.05940735485114601 MQAMKGLNFVC 11 Unmodified _MQAMKGLNFVC_ 0 0 0 REV__L1ME5_dup2803|chr16:75073307-75073868:-|1.0262198784237309|0.0107011349818791|6.58|151.0|41|3|anti-sense REV__L1ME5_dup2803|chr16:75073307-75073868:-|1.0262198784237309|0.0107011349818791|6.58|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 621.29736328125 2 621.295604 1240.57666 NaN NaN NaN NaN NaN NaN NaN 77.754 1 81.097 80.597 81.597 3.3428 0 0 0 0.38417 1 19303 19303 2.7352 0.89096 1 + 27603 28329 17384 17393 32018 32018 -0.03400958461111259 MQCLRIDLI 9 Unmodified _MQCLRIDLI_ 0 0 0 REV__L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|190|3|anti-sense REV__L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|190|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.8005981445312 2 552.798837 1103.58312 0.42629 0.00023565 2.2641 0.0012516 2.6904 0.0014872 552.7999199226795 61.541 0.2792 64.909 64.763 65.042 3.3681 26 19 2 0 0 0 0.31407 1 14414 14414 13.042 3.695 1 60600 + 27604 30263 17385 17394 32019 32019 0.03547302761876381 MQDHFHVF 8 Unmodified _MQDHFHVF_ 0 0 0 ENST00000477044.6_1_2:70451646-70455482:-|nuORF ENST00000477044.6_1_2:70451646-70455482:-|nuORF ENST00000477044.6_1_2:70451646-70455482:-|nuORF MSMS UPN47_class_I_Rep_1 2 530.7346801757812 2 530.737094 1059.45964 NaN NaN NaN NaN NaN NaN NaN 26.898 1 30.665 30.165 31.165 3.7662 0 0 0 0.40738 1 3919 3919 0.79363 0 1 27605 6973 17386 17395 32020 32020 -0.0677161229423291 MQGNKKVP 8 Unmodified _MQGNKKVP_ 0 0 0 REV__L1MC2_dup855|chr2:159799179-159800230:+|1.3474644392181176|0.2142704221908549|2.65|151.0|1|1|sense REV__L1MC2_dup855|chr2:159799179-159800230:+|1.3474644392181176|0.2142704221908549|2.65|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 451.2485656738281 2 451.249837 900.485122 NaN NaN NaN NaN NaN NaN NaN 60.172 1 63.658 63.158 64.158 3.4868 0 0 0 0.40625 1 13264 13264 2.3027 0 1 + 27606 26696 17387 17396 32021 32021 0.0308986222820522 MQHIFSDVMF 10 Unmodified _MQHIFSDVMF_ 0 0 0 L1MEc_dup14071|chr13:20020724-20020980:-|2.398980852959142|0.2716838203460192|3.14|151.0|13|1|anti-sense L1MEc_dup14071|chr13:20020724-20020980:-|2.398980852959142|0.2716838203460192|3.14|151.0|13|1|anti-sense L1MEc_dup14071|chr13:20020724-20020980:-|2.398980852959142|0.2716838203460192|3.14|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 627.78564453125 2 627.785927 1253.5573 NaN NaN NaN NaN NaN NaN NaN 45.996 1 49.349 48.849 49.849 3.3534 0 0 0 0.53105 1 9745 9745 2.9952 0.26005 1 27607 13020 17388 17397 32022 32022 -0.05933591480402356 MQIINTVRY 9 Unmodified _MQIINTVRY_ 0 0 0 L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|34|2|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|34|2|sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 569.3096923828125 2 569.307884 1136.60121 NaN NaN NaN NaN NaN NaN NaN 40.714 1 40.714 40.214 41.214 0 0 0 0 0.38639 1 7920 7920 3.9444 0.3479 1 27608 9852 17389 17398 32023 32023 0.038377610082534375 MQKEITAL 8 Oxidation (M) _M(Oxidation (M))QKEITAL_ M(1)QKEITAL M(52)QKEITAL 0 0 1 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000107796|ENST00000224784|ACTA2 ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2 ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN46_class_I_Rep_3 1 475.2547302246094 2 475.254785 948.495018 0.12321 5.8555E-05 -0.093982 -4.4665E-05 0.029226 1.389E-05 475.25457128555985 35.796 0.8914 35.796 35.455 36.346 0 169 65 3 0 0 0 0.82752 2 6540 6540;6580 60.074 20.117 1 981890 27609 1146;1832 17390 17399 32024;32025 32024 31 0.01871005442922069 MQKFVVLW 8 Unmodified _MQKFVVLW_ 0 0 0 ENSG00000115935.18,WIPF1,chr2,-,I5.1,174630697,174634517|79|12.76|1|intron ENSG00000115935.18,WIPF1,chr2,-,I5.1,174630697,174634517|79|12.76|1|intron ENSG00000115935.18,WIPF1,chr2,-,I5.1,174630697,174634517|79|12.76|1|intron MSMS UPN48_class_I_Rep_1 5 525.7919921875 2 525.793881 1049.57321 NaN NaN NaN NaN NaN NaN NaN 38.598 1 42.103 41.603 42.603 3.5048 0 0 0 0.40604 1 6708 6708 2.5775 0.27475 1 27610 2150 17391 17400 32026 32026 0.05040482818822056 MQKPKILL 8 Unmodified _MQKPKILL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|23|2|sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 485.81158447265625 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 53.479 1 56.674 56.174 57.174 3.1948 0 0 0 0.40625 1 12067 12067 2.3027 0 1 + 27611 32341 17392 17401 32027 32027 0.11849055852928814 MQLFNFFF 8 Unmodified _MQLFNFFF_ 0 0 0 HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|75|2|anti-sense HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|75|2|anti-sense HAL1_dup19187|chr15:68081592-68082923:+|1.1702511425535174|0.0675017680872597|4.12|151.0|75|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 547.3330078125 2 547.262413 1092.51027 0.44248 0.00024215 -0.45407 -0.00024849 -0.011584 -6.3395E-06 547.2620470314323 73.099 0.16281 76.327 76.221 76.384 3.2271 19 13 2 0 0 0 0.72333 1 18046 18046 4.756 1.1595 1 32561 27612 7850 17393 17402 32028 32028 -0.032280829692126645 MQLVGQVDTF 10 Unmodified _MQLVGQVDTF_ 0 0 0 ENSG00000187566|ENST00000340650|NHLRC1 ENSG00000187566|ENST00000340650|NHLRC1 ENSG00000187566|ENST00000340650|NHLRC1 MSMS UPN48_class_I_Rep_2 6 569.7485961914062 2 569.284074 1136.5536 NaN NaN NaN NaN NaN NaN NaN 50.148 1 53.842 53.342 54.342 3.6946 0 0 0 0.53105 1 10208 10208 1.4819 0.15237 1 27613 5193 17394 17403 32029 32029 -0.009219379826163276 MQMRREWCEIF 11 Unmodified _MQMRREWCEIF_ 0 0 0 L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|50|3|sense L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|50|3|sense L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|50|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 510.2342224121094 3 510.233441 1527.67849 -0.25137 -0.00012826 1.3403 0.00068385 1.0889 0.0005556 510.23405768902194 19.187 0.18266 22.767 22.716 22.898 3.5806 31 22 2 0 0 0 22.551 1 1745 1745 0.50596 0.09769 1 51205 27614 11104 17395 17404 32030 32030 -0.06423712109381086 MQQHECAMSWR 11 Unmodified _MQQHECAMSWR_ 0 0 0 ENSG00000105875|ENST00000354475|WDR91 ENSG00000105875|ENST00000354475|WDR91 ENSG00000105875|ENST00000354475|WDR91 MSMS UPN48_class_I_Rep_1 5 469.5300598144531 3 469.530258 1405.56894 NaN NaN NaN NaN NaN NaN NaN 39.003 1 42.508 42.008 43.008 3.5048 0 0 0 0.38417 1 6832 6832 0.40827 0 1 27615 1767 17396 17405 32031 32031 -0.11761717728722942 MQSESLKKF 9 Unmodified _MQSESLKKF_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|39|2|sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|39|2|sense MSMS UPN48_class_I_Rep_2 6 549.28466796875 2 549.286617 1096.55868 NaN NaN NaN NaN NaN NaN NaN 39.223 1 42.953 42.453 43.453 3.7297 0 0 0 0.25702 1 6935 6935 13.042 0 1 + 27616 27340 17397 17406 32032 32032 0.014263658800018675 MQVHWCCCC 9 Unmodified _MQVHWCCCC_ 0 0 0 REV__L1PA13_dup6781|chr12:1337116-1339566:-|2.9091429888535068|0.0448601501625608|6.02|151.0|67|3|sense REV__L1PA13_dup6781|chr12:1337116-1339566:-|2.9091429888535068|0.0448601501625608|6.02|151.0|67|3|sense MSMS UPN46_class_I_Rep_3 1 556.7286987304688 2 556.683778 1111.353 NaN NaN NaN NaN NaN NaN NaN 119.52 1 119.52 119.02 120.02 0 0 0 0 0.4029 1 29710 29710 0 0 1 + 27617 29117 17398 17407 32033 32033 -0.19821893438552252 MRCIPKVKVK 10 Unmodified _MRCIPKVKVK_ 0 0 0 Tigger19a_dup2899|chr15:68816930-68817013:+|1.1399517640810548|0.0288106826419841|5.31|151.0|2|1|sense Tigger19a_dup2899|chr15:68816930-68817013:+|1.1399517640810548|0.0288106826419841|5.31|151.0|2|1|sense Tigger19a_dup2899|chr15:68816930-68817013:+|1.1399517640810548|0.0288106826419841|5.31|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 601.367919921875 2 601.367221 1200.71989 NaN NaN NaN NaN NaN NaN NaN 88.357 1 91.804 91.304 92.304 3.4471 0 0 0 0.53105 1 21975 21975 0.40072 0 1 27618 33263 17399 17408 32034 32034 0.1275583671226741 MRFFFPMR 8 Unmodified _MRFFFPMR_ 0 0 0 REV__L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|28|2|sense REV__L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|28|2|sense MSMS UPN48_class_I_Rep_3 7 566.0372314453125 2 566.283157 1130.55176 NaN NaN NaN NaN NaN NaN NaN 29.504 1 33.232 32.732 33.732 3.7286 0 0 0 0.40746 1 4144 4144 0.69038 0 1 + 27619 30717 17400 17409 32035 32035 -0.008292254815387423 MRFQKKPR 8 Unmodified _MRFQKKPR_ 0 0 0 REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|72|1|anti-sense REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|72|1|anti-sense MSMS UPN47_class_I_Rep_2 3 545.8180541992188 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 83.615 1 87.027 86.527 87.527 3.4116 0 0 0 0.40746 1 20847 20847 0.69038 0 1 + 27620 30951 17401 17410 32036 32036 0.0817261054746723 MRGGHKGGRCA 11 Unmodified _MRGGHKGGRCA_ 0 0 0 ENSG00000240771|ENST00000286494|ARHGEF25 ENSG00000240771|ENST00000286494|ARHGEF25 ENSG00000240771|ENST00000286494|ARHGEF25 MSMS UPN48_class_I_Rep_3 7 565.2778930664062 2 565.276926 1128.5393 NaN NaN NaN NaN NaN NaN NaN 23.16 1 26.911 26.411 27.411 3.7507 0 0 0 0.38417 1 2488 2488 0 0 1 27621 5705 17402 17411 32037 32037 -0.019828688918551052 MRGLFLFF 8 Unmodified _MRGLFLFF_ 0 0 0 REV__L1MA2_dup183|chr1:93165562-93168116:-|4.880466427427871|0.3063260769364375|3.99|151.0|162|3|anti-sense REV__L1MA2_dup183|chr1:93165562-93168116:-|4.880466427427871|0.3063260769364375|3.99|151.0|162|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.7830810546875 2 515.780773 1029.54699 0.39392 0.00020318 1.6765 0.00086473 2.0705 0.0010679 515.7822215174957 59.461 0.23897 62.941 62.841 63.08 3.4801 22 16 2 0 0 0 0.82752 1 13074 13074 5.7604 0 1 110960 + 27622 24839 17403 17412 32038 32038 0.033402136473569044 MRGQKILW 8 Unmodified _MRGQKILW_ 0 0 0 REV__HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|18|2|sense REV__HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|18|2|sense MSMS UPN46_class_I_Rep_3 1 516.2953491210938 2 516.294579 1030.57461 NaN NaN NaN NaN NaN NaN NaN 82.891 1 82.891 82.391 83.391 0 0 0 0 0.40746 1 19660 19660 0.69038 0 1 + 27623 23343 17404 17413 32039 32039 0.060541169075804646 MRGWRKRKM 9 Unmodified _MRGWRKRKM_ 0 0 0 REV__ENST00000465550.5_1_2:220098965-220099016:+|nuORF REV__ENST00000465550.5_1_2:220098965-220099016:+|nuORF MSMS UPN48_class_I_Rep_3 7 416.9004821777344 3 416.902466 1247.68557 NaN NaN NaN NaN NaN NaN NaN 17.035 1 20.584 20.084 21.084 3.5486 0 0 0 0.40177 1 914 914 0.26902 0.1097 1 + 27624 22469 17405 17414 32040 32040 0.07163433344021541 MRHFCLIY 8 Unmodified _MRHFCLIY_ 0 0 0 REV__L1M5_dup41060|chr13:28152712-28153151:+|1.780586005761728|0.0124388071764939|7.16|151.0|24|2|anti-sense REV__L1M5_dup41060|chr13:28152712-28153151:+|1.780586005761728|0.0124388071764939|7.16|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 541.766845703125 2 541.76734 1081.52013 NaN NaN NaN NaN NaN NaN NaN 56.41 1 59.867 59.367 60.367 3.4572 0 0 0 0.4032 1 12881 12881 6.3541 0.59368 1 + 27625 24674 17406 17415 32041 32041 -0.01737218235484761 MRICWYCLFLS 11 Unmodified _MRICWYCLFLS_ 0 0 0 REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|328|3|anti-sense REV__L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|328|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.8956298828125 3 478.895878 1433.66581 -0.061773 -2.9583E-05 0.55001 0.0002634 0.48823 0.00023381 478.8962390521532 46.812 0.21715 50.056 49.879 50.096 3.2439 16 12 2 0 0 0 0.68081 1 10022 10022 0.45452 0 1 90219 + 27626 29549 17407 17416 32042 32042 -0.03368123501604714 MRIFKIYY 8 Unmodified _MRIFKIYY_ 0 0 0 L1MA9_dup954|chr1:235689289-235689821:+|2.6650256244131074|0.0493836783257309|5.75|151.0|25|1|anti-sense L1MA9_dup954|chr1:235689289-235689821:+|2.6650256244131074|0.0493836783257309|5.75|151.0|25|1|anti-sense L1MA9_dup954|chr1:235689289-235689821:+|2.6650256244131074|0.0493836783257309|5.75|151.0|25|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.322265625 2 567.312438 1132.61032 0.12063 6.8432E-05 -0.53763 -0.00030501 -0.41701 -0.00023657 567.3103293476883 26.335 0.34938 26.335 26.135 26.484 0 38 29 2 0 0 0 0.82752 1 3733 3733 0.69038 0 1 52550 27627 10162 17408 17417 32043 32043 0.049321543645874044 MRKCVLRL 8 Unmodified _MRKCVLRL_ 0 0 0 REV__ENST00000519894.1_1_1:224301987-224318335:+|nuORF REV__ENST00000519894.1_1_1:224301987-224318335:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 509.8027648925781 2 509.804257 1017.59396 0.18456 9.4087E-05 -1.2649 -0.00064484 -1.0803 -0.00055075 509.80336019495303 78.73 0.26327 82.073 81.971 82.235 3.3428 42 28 2 0 0 0 0.82752 1 19586 19586 0.69038 0 1 69564 + 27628 19461 17409 17418 32044 32044 0.08586749926837456 MRKERRHIKLY 11 Unmodified _MRKERRHIKLY_ 0 0 0 REV__L1MA4_dup9246|chr18:21786396-21787826:-|1.0957360757031367|0.0339517502354461|5.01|151.0|24|2|sense REV__L1MA4_dup9246|chr18:21786396-21787826:-|1.0957360757031367|0.0339517502354461|5.01|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 510.6344299316406 3 510.633033 1528.87727 NaN NaN NaN NaN NaN NaN NaN 98.662 1 98.662 98.162 99.162 0 0 0 0 0.38417 1 24022 24022 0.094841 0 1 + 27629 25228 17410 17419 32045 32045 0.13398632575990632 MRKGIRWLIEL 11 Unmodified _MRKGIRWLIEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS UPN47_class_I_Rep_2 3 472.282470703125 3 472.28323 1413.82786 0.26566 0.00012547 0.018224 8.607E-06 0.28389 0.00013407 472.28310254526804 93.092 0.2569 96.561 96.345 96.602 3.4687 44 35 2 0 0 0 0.68024 1 22975 22975 0.50596 0 1 92283 27630 5015 17411 17420 32046 32046 0.1374992456721884 MRKGIRWLIEL 11 Unmodified _MRKGIRWLIEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-SECPEP UPN47_class_I_Rep_3 4 471.79571533203125 3 472.28323 1413.82786 0.057881 2.7336E-05 0.23301 0.00011005 0.29089 0.00013738 472.28320779573744 93.547 0.28506 96.952 96.768 97.053 3.4052 48 39 2 0 0 0 22.551 1 23312 23312 0.50596 0 1 116410 27631 5015 17411 17420 32047 32047 0.1374992456721884 MRKGIRWLIEL 11 Unmodified _MRKGIRWLIEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS UPN48_class_I_Rep_1 5 472.2832946777344 3 472.28323 1413.82786 0.086127 4.0676E-05 -0.59662 -0.00028177 -0.51049 -0.0002411 472.282847468691 92.723 0.13942 96.347 96.289 96.429 3.624 33 19 2 0 0 0 0.68024 1 22289 22289 0.50596 0 1 139090 27632 5015 17411 17420 32048 32048 0.1374992456721884 MRKGIRWLIEL 11 Unmodified _MRKGIRWLIEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS UPN48_class_I_Rep_3 7 472.2833251953125 3 472.28323 1413.82786 0.21378 0.00010096 0.14429 6.8144E-05 0.35806 0.00016911 472.28310715887727 92.797 0.23833 96.676 96.482 96.72 3.8782 44 33 2 0 0 0 0.68024 1 21992 21992 0.50596 0.051438 1 174330 27633 5015 17411 17420 32049 32049 0.1374992456721884 MRKGIRWLIEL 11 Unmodified _MRKGIRWLIEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS UPN48_class_I_Rep_3 7 472.28314208984375 3 472.28323 1413.82786 0.21353 0.00010085 0.12733 6.0135E-05 0.34086 0.00016098 472.28301674583327 92.908 0.31042 96.786 96.699 97.01 3.8782 61 43 3 0 0 0 0.68024 1 22045 22045 0.50596 0 1 173110 27634 5015 17411 17420 32050 32050 0.1374992456721884 MRKGIRWLIEL 11 Unmodified _MRKGIRWLIEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-SECPEP UPN48_class_I_Rep_3 7 472.2821350097656 3 472.28323 1413.82786 0.21286 0.00010053 0.11342 5.3568E-05 0.32629 0.0001541 472.6177707140314 93.174 0.12922 97.065 97.016 97.145 3.8914 25 17 2 0 0 0 22.551 1 22094 22094 0.094841 0.011491 1 156650 27635 5015 17411 17420 32051 32051 0.1374992456721884 MRKHAFAI 8 Unmodified _MRKHAFAI_ 0 0 0 REV__ENST00000463365.1_1_1:161722216-161723087:+|nuORF REV__ENST00000463365.1_1_1:161722216-161723087:+|nuORF MSMS UPN46_class_I_Rep_3 1 487.2735290527344 2 487.273647 972.532741 NaN NaN NaN NaN NaN NaN NaN 64.901 1 64.901 64.401 65.401 0 0 0 0 0.40738 1 14642 14642 0.79363 0 1 + 27636 17915 17412 17421 32052 32052 0.04537561219046893 MRKIFLLAQ 9 Unmodified _MRKIFLLAQ_ 0 0 0 REV__ENSG00000125755|ENST00000245934|SYMPK REV__ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS UPN47_class_I_Rep_1 2 560.3389282226562 2 560.338987 1118.66342 0.51117 0.00028643 2.8534 0.0015989 3.3646 0.0018853 560.3414398346372 107.44 0.32375 111.11 110.98 111.3 3.6724 70 38 3 0 0 0 0.46869 1 26313 26313 3.9444 0 1 3460700 + 27637 18840 17413 17422 32053 32053 0.10883532147249753 MRKIFLLAQ 9 Unmodified _MRKIFLLAQ_ 0 0 0 REV__ENSG00000125755|ENST00000245934|SYMPK REV__ENSG00000125755|ENST00000245934|SYMPK MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 560.338987 1118.66342 0.51117 0.00028643 2.8534 0.0015989 3.3646 0.0018853 560.3414398346372 107.44 0.32375 111.11 110.98 111.3 3.6724 0.058502 0.00058888 NaN 3.9444 70 38 3 NaN NaN NaN NaN 0 NaN NaN 0 3460700 + 27638 18840 17413 17422 0.10883532147249753 MRKIFLLAQ 9 Unmodified _MRKIFLLAQ_ 0 0 0 REV__ENSG00000125755|ENST00000245934|SYMPK REV__ENSG00000125755|ENST00000245934|SYMPK MULTI-MATCH UPN47_class_I_Rep_2 3 2 560.338987 1118.66342 0.63479 0.0003557 3.5663 0.0019984 4.2011 0.0023541 560.3417840332796 107.56 0.031662 111.1 111.08 111.12 3.5345 0.046297 0.0013878 NaN 3.9444 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1018100 + 27639 18840 17413 17422 0.10883532147249753 MRKKNWLL 8 Unmodified _MRKKNWLL_ 0 0 0 REV__ENSG00000235568|ENST00000329021|NFAM1 REV__ENSG00000235568|ENST00000329021|NFAM1 MSMS UPN48_class_I_Rep_1 5 544.8251953125 2 544.823504 1087.63245 NaN NaN NaN NaN NaN NaN NaN 89.303 1 92.929 92.429 93.429 3.6255 0 0 0 0.40604 1 21440 21440 2.5775 0 1 + 27640 21307 17414 17423 32054 32054 0.09214378833007686 MRKLVLSGFL 10 Unmodified _MRKLVLSGFL_ 0 0 0 nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR nc|ENSG00000159842|Q12979-4|ABR nc|ENSG00000159842|Q12979-4|ABR MSMS UPN48_class_I_Rep_2 6 582.3529052734375 2 582.352094 1162.68964 NaN NaN NaN NaN NaN NaN NaN 107.73 1 111.41 110.91 111.91 3.6783 0 0 0 0.53105 1 25478 25478 13.042 2.9685 1 27641 3846 17415 17424 32055 32055 0.11479801318751015 MRKNAMQTD 9 Unmodified _MRKNAMQTD_ 0 0 0 REV__L1MD3_dup4307|chr16:3833776-3834866:+|1.353987879755656|0.0249604921236068|5.76|151.0|26|3|sense REV__L1MD3_dup4307|chr16:3833776-3834866:+|1.353987879755656|0.0249604921236068|5.76|151.0|26|3|sense MSMS UPN47_class_I_Rep_3 4 547.7586669921875 2 547.757701 1093.50085 NaN NaN NaN NaN NaN NaN NaN 22.169 1 25.519 25.019 26.019 3.3496 0 0 0 0.39518 1 2608 2608 1.8442 0 1 + 27642 27484 17416 17425 32056 32056 -0.04216219317049763 MRKNTFIW 8 Unmodified _MRKNTFIW_ 0 0 0 REV__L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|20|3|sense REV__L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 548.2911987304688 2 548.292037 1094.56952 NaN NaN NaN NaN NaN NaN NaN 92.929 1 92.929 92.429 93.429 0 0 0 0 0.40746 1 22507 22507 0.69038 0 1 + 27643 24433 17417 17426 32057 32057 0.026018130449529053 MRKPRRRGRLF 11 Unmodified _MRKPRRRGRLF_ 0 0 0 REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 491.63421630859375 3 491.633367 1471.87827 0.26827 0.00013189 0.53753 0.00026427 0.8058 0.00039616 491.6337038548518 105.89 0.18818 109.43 109.28 109.47 3.5367 37 28 2 0 0 0 0.68081 1 25894 25894 0.45452 0.31463 1 1159700 + 27644 22813 17418 17427 32058 32058 0.16120891735567966 MRLAEPPF 8 Unmodified _MRLAEPPF_ 0 0 0 REV__nc|ENSG00000177666|Q96AD5-2|PNPLA2 REV__nc|ENSG00000177666|Q96AD5-2|PNPLA2 MSMS UPN46_class_I_Rep_3 1 481.24169921875 2 480.752213 959.489873 NaN NaN NaN NaN NaN NaN NaN 21.102 1 21.102 20.602 21.602 0 0 0 0 0.40746 1 2304 2304 0.69038 0 1 + 27645 20627 17419 17428 32059 32059 0.008507463709747753 MRLHYIFRLVF 11 Unmodified _MRLHYIFRLVF_ 0 0 0 AluSx1_dup105298|chr19:15315573-15315853:+|1.047752110058152|0.0118820333942074|6.46|151.0|19|2|anti-sense AluSx1_dup105298|chr19:15315573-15315853:+|1.047752110058152|0.0118820333942074|6.46|151.0|19|2|anti-sense AluSx1_dup105298|chr19:15315573-15315853:+|1.047752110058152|0.0118820333942074|6.46|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_1 2 498.8411865234375 3 498.951592 1493.83295 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.3 114.8 115.8 3.572 0 0 0 0.38417 1 27568 27568 0.094841 0 1 27646 309 17420 17429 32060 32060 0.10578228429790215 MRLKRRIDPA 10 Unmodified _MRLKRRIDPA_ 0 0 0 REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.3743896484375 2 628.374423 1254.73429 NaN NaN NaN NaN NaN NaN NaN 38.595 1 38.595 38.095 39.095 0 0 0 0 0.53105 1 7359 7359 2.9952 1.151 1 + 27647 23193 17421 17430 32061 32061 0.11711625184761942 MRLLIFSF 8 Unmodified _MRLLIFSF_ 0 0 0 REV__L1MA4_dup6706|chr10:37973613-37975398:+|1.243868969847621|0.1655058056098126|2.91|150.0|121|3|anti-sense REV__L1MA4_dup6706|chr10:37973613-37975398:+|1.243868969847621|0.1655058056098126|2.91|150.0|121|3|anti-sense MSMS UPN48_class_I_Rep_2 6 513.7953491210938 2 513.793881 1025.57321 NaN NaN NaN NaN NaN NaN NaN 61.81 1 65.284 64.784 65.784 3.4738 0 0 0 0.39624 1 13761 13761 9.3474 2.9933 1 + 27648 25195 17422 17431 32062 32062 0.061444828188314204 MRLPVTLI 8 Unmodified _MRLPVTLI_ 0 0 0 REV__nc|ENSG00000164889|P04920-2|SLC4A2 REV__nc|ENSG00000164889|P04920-2|SLC4A2 MSMS UPN47_class_I_Rep_2 3 471.79583740234375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 85.896 1 89.329 88.829 89.829 3.4329 0 0 0 0.4044 1 21369 21369 4.756 0 1 + 27649 20092 17423 17432 32063 32063 0.10008482818830089 MRLWSFFV 8 Unmodified _MRLWSFFV_ 0 0 0 L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|20|2|anti-sense L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|20|2|anti-sense L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_3 7 543.2863159179688 2 543.28368 1084.55281 NaN NaN NaN NaN NaN NaN NaN 43.693 1 47.332 46.832 47.832 3.6385 0 0 0 0.40643 1 8162 8162 2.0598 0.21551 1 27650 11101 17424 17433 32064 32064 0.013913121590121591 MRMLTKIQI 9 Unmodified _MRMLTKIQI_ 0 0 0 REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|57|2|sense REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|57|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.8045043945312 2 567.330304 1132.64606 0.46334 0.00026287 -0.76676 -0.00043501 -0.30342 -0.00017214 567.3295937653246 98.925 0.22803 98.925 98.741 98.969 0 53 25 3 0 0 0 0.48846 1 24049 24049 1.8442 0 1 360680 + 27651 25470 17425 17434 32065 32065 0.08503868549951221 MRNFKKKK 8 Unmodified _MRNFKKKK_ 0 0 0 L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|11|2|sense L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|11|2|sense L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 540.3302001953125 2 540.328953 1078.64335 NaN NaN NaN NaN NaN NaN NaN 79.457 1 82.922 82.422 83.422 3.465 0 0 0 0.40746 1 19800 19800 0.69038 0 1 27652 14938 17426 17435 32066 32066 0.107177812072905 MRNLPWMT 8 Unmodified _MRNLPWMT_ 0 0 0 REV__L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|14|2|sense REV__L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 524.7302856445312 2 524.756972 1047.49939 NaN NaN NaN NaN NaN NaN NaN 114.21 1 117.79 117.29 118.29 3.5809 0 0 0 0.40604 1 28212 28212 2.5775 0 1 + 27653 28250 17427 17436 32067 32067 -0.022458086151345924 MRNPIILLR 9 Unmodified _MRNPIILLR_ 0 0 0 REV__MER2B_dup387|chr4:77050914-77051242:-|1.5068574790829072|0.3673277536058512|2.04|151.0|25|3|anti-sense REV__MER2B_dup387|chr4:77050914-77051242:-|1.5068574790829072|0.3673277536058512|2.04|151.0|25|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 562.7673950195312 2 563.349886 1124.68522 0.49172 0.00027701 2.2603 0.0012733 2.752 0.0015503 563.3511646721611 89.466 0.051804 93.204 93.166 93.218 3.7379 8 5 2 0 0 0 0.12532 1 21315 21315 0.52476 0 1 47272 + 27654 31250 17428 17437 32068 32068 0.12786336895828754 MRNPIILLR 9 Unmodified _MRNPIILLR_ 0 0 0 REV__MER2B_dup387|chr4:77050914-77051242:-|1.5068574790829072|0.3673277536058512|2.04|151.0|25|3|anti-sense REV__MER2B_dup387|chr4:77050914-77051242:-|1.5068574790829072|0.3673277536058512|2.04|151.0|25|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 563.349886 1124.68522 0.44233 0.00024918 1.7816 0.0010036 2.2239 0.0012528 563.3509117636006 89.445 0.044411 93.071 93.031 93.076 3.6255 -0.11562 -0.00017735 NaN 0.52476 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 79803 + 27655 31250 17428 17437 0.12786336895828754 MRNSDFWPR 9 Unmodified _MRNSDFWPR_ 0 0 0 L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|52|3|sense L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|52|3|sense L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|52|3|sense MSMS UPN47_class_I_Rep_3 4 604.7865600585938 2 604.785107 1207.55566 NaN NaN NaN NaN NaN NaN NaN 69.64 1 72.844 72.344 73.344 3.2044 0 0 0 0.38478 1 16991 16991 4.3292 0.73274 1 27656 14323 17429 17438 32069 32069 -0.039814644541593225 MRPFKKHVKV 10 Unmodified _MRPFKKHVKV_ 0 0 0 REV__L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|329|3|anti-sense REV__L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|329|3|anti-sense MSMS UPN46_class_I_Rep_3 1 635.3851928710938 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 78.963 1 78.963 78.463 79.463 0 0 0 0 0.53105 1 18524 18524 0.40072 0 1 + 27657 24203 17430 17439 32070 32070 0.13034001195501332 MRPWLVFR 8 Unmodified _MRPWLVFR_ 0 0 0 REV__L1MEf_dup1035|chr2:46724405-46726094:-|1.011674486802825|0.0168396207216177|5.91|149.0|83|2|anti-sense REV__L1MEf_dup1035|chr2:46724405-46726094:-|1.011674486802825|0.0168396207216177|5.91|149.0|83|2|anti-sense MSMS UPN47_class_I_Rep_3 4 552.8108520507812 2 552.810396 1103.60624 NaN NaN NaN NaN NaN NaN NaN 34.102 1 37.377 36.877 37.877 3.2748 0 0 0 0.40746 1 6161 6161 0.69038 0 1 + 27658 26609 17431 17440 32071 32071 0.05858109661517119 MRQMLPIYS 9 Unmodified _MRQMLPIYS_ 0 0 0 MLT1J1_dup3446|chr11:72950795-72951233:+|1.4354033864360816|0.0373422718306092|5.26|151.0|12|2|sense MLT1J1_dup3446|chr11:72950795-72951233:+|1.4354033864360816|0.0373422718306092|5.26|151.0|12|2|sense MLT1J1_dup3446|chr11:72950795-72951233:+|1.4354033864360816|0.0373422718306092|5.26|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 569.7908325195312 2 569.791012 1137.56747 NaN NaN NaN NaN NaN NaN NaN 37.083 1 40.785 40.285 41.285 3.7021 0 0 0 0.39518 1 6306 6306 1.8442 0 1 27659 16470 17432 17441 32072 32072 0.004190162448821866 MRRALVNRC 9 Unmodified _MRRALVNRC_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|295|2|anti-sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|295|2|anti-sense MSMS UPN48_class_I_Rep_1 5 559.8076782226562 2 559.805319 1117.59609 NaN NaN NaN NaN NaN NaN NaN 57.347 1 60.841 60.341 61.341 3.4942 0 0 0 0.39518 1 12417 12417 1.8442 0.19162 1 + 27660 23720 17433 17442 32073 32073 0.04199178664634928 MRRHQFWT 8 Unmodified _MRRHQFWT_ 0 0 0 REV__nc|ENSG00000187048|Q02928-2|CYP4A11 REV__nc|ENSG00000187048|Q02928-2|CYP4A11 MSMS UPN47_class_I_Rep_1 2 581.7626953125 2 581.290359 1160.56617 NaN NaN NaN NaN NaN NaN NaN 26.236 1 29.998 29.498 30.498 3.7624 0 0 0 0.40625 1 3725 3725 2.3027 0.4585 1 + 27661 19921 17434 17443 32074 32074 -0.0076943700905758305 MRRRKKRHP 9 Unmodified _MRRRKKRHP_ 0 0 0 ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF MSMS UPN46_class_I_Rep_3 1 632.88525390625 2 632.885824 1263.7571 NaN NaN NaN NaN NaN NaN NaN 23.337 1 23.337 22.837 23.837 0 0 0 0 0.4007 1 2910 2910 0.52476 0.12405 1 27662 6220 17435 17444 32075 32075 0.13576689092906236 MRSIKCPIP 9 Unmodified _MRSIKCPIP_ 0 0 0 REV__MER2B_dup1385|chr17:68123113-68123252:-|1.0594807124354069|0.0864095733464317|3.62|151.0|4|2|sense REV__MER2B_dup1385|chr17:68123113-68123252:-|1.0594807124354069|0.0864095733464317|3.62|151.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 522.80810546875 2 522.788272 1043.56199 NaN NaN NaN NaN NaN NaN NaN 71.957 1 71.957 71.457 72.457 0 0 0 0 0.37891 1 16605 16605 5.7319 2.8426 1 + 27663 31249 17436 17445 32076 32076 0.04195337453029424 MRSRTSMR 8 Unmodified _MRSRTSMR_ 0 0 0 ENST00000436452.6_1_22:38247418-38251585:+|nuORF ENST00000436452.6_1_22:38247418-38251585:+|nuORF ENST00000436452.6_1_22:38247418-38251585:+|nuORF MSMS UPN48_class_I_Rep_2 6 512.7293090820312 2 512.760578 1023.5066 NaN NaN NaN NaN NaN NaN NaN 119.15 1 122.81 122.31 123.31 3.6652 0 0 0 0.40625 1 28588 28588 2.3027 0 1 27664 6756 17437 17446 32077 32077 -0.0042107601472025635 MRTPPLQQ 8 Unmodified _MRTPPLQQ_ 0 0 0 THE1B-int_dup668|chr3:11406935-11408503:-|2.632051465010235|0.0067946415741704|8.6|151.0|75|2|anti-sense;THE1B-int_dup3348|chr12:62344036-62345644:-|4.983655727771014|0.0975855230290243|5.67|151.0|55|1|anti-sense;THE1B-int_dup1642|chr5:116328802-116330374:-|2.531352555806424|0.0265253624666314|6.58|150.0|88|3|anti-sense;THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|49|1|anti-sense THE1B-int_dup668|chr3:11406935-11408503:-|2.632051465010235|0.0067946415741704|8.6|151.0|75|2|anti-sense THE1B-int_dup668|chr3:11406935-11408503:-|2.632051465010235|0.0067946415741704|8.6|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.7544860839844 2 485.760569 969.506586 NaN NaN NaN NaN NaN NaN NaN 25.157 1 28.906 28.406 29.406 3.7495 0 0 0 0.40625 1 3406 3406 2.3027 0 1 27665 32870 17438 17447 32078 32078 0.02061247256938259 MRTRHQNEF 9 Unmodified _MRTRHQNEF_ 0 0 0 REV__L1PA6_dup1767|chr4:165265609-165270909:-|2.1973395311177266|0.2057772026237083|3.42|151.0|43|1|sense REV__L1PA6_dup1767|chr4:165265609-165270909:-|2.1973395311177266|0.2057772026237083|3.42|151.0|43|1|sense MSMS UPN47_class_I_Rep_3 4 406.7761535644531 3 406.864734 1217.57237 NaN NaN NaN NaN NaN NaN NaN 62.581 1 65.751 65.251 66.251 3.1698 0 0 0 0.40098 1 14847 14847 0.20686 0 1 + 27666 29848 17439 17448 32079 32079 -0.02770963568195839 MRTYLETLT 9 Unmodified _MRTYLETLT_ 0 0 0 REV__ENSG00000167972|ENST00000301732|ABCA3 REV__ENSG00000167972|ENST00000301732|ABCA3 MULTI-MSMS UPN47_class_I_Rep_2 3 564.2926635742188 2 564.291899 1126.56925 0.40233 0.00022703 -0.13577 -7.6614E-05 0.26656 0.00015042 564.2918726439453 49.269 0.84204 52.616 52.309 53.151 3.3465 102 55 3 0 0 0 0.43982 1 10669 10669 5.7319 0.43497 1 193820 + 27667 20247 17440 17449 32080 32080 0.011023485344594519 MRVPALHCR 9 Unmodified _MRVPALHCR_ 0 0 0 REV__L1PREC2_dup6659|chr15:72080604-72085112:-|3.747538229361434|0.0603144834673881|5.96|151.0|88|2|sense REV__L1PREC2_dup6659|chr15:72080604-72085112:-|3.747538229361434|0.0603144834673881|5.96|151.0|88|2|sense MSMS UPN47_class_I_Rep_1 2 541.7903442382812 2 541.789138 1081.56372 NaN NaN NaN NaN NaN NaN NaN 88.625 1 92.281 91.781 92.781 3.6563 0 0 0 0.39518 1 22165 22165 1.8442 0 1 + 27668 30748 17441 17450 32081 32081 0.026203912616438174 MRVPIAPY 8 Unmodified _MRVPIAPY_ 0 0 0 L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|71|1|anti-sense L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|71|1|anti-sense L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|71|1|anti-sense MSMS UPN46_class_I_Rep_3 1 473.66253662109375 2 473.762581 945.510608 NaN NaN NaN NaN NaN NaN NaN 46.835 1 46.835 46.335 47.335 0 0 0 0 0.40581 1 9633 9633 2.8892 0 1 27669 11271 17442 17451 32082 32082 0.035673367506319664 MRVPILFR 8 Unmodified _MRVPILFR_ 0 0 0 HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|259|2|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|259|2|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|259|2|anti-sense MSMS UPN47_class_I_Rep_1 2 516.3135986328125 2 516.312772 1030.61099 NaN NaN NaN NaN NaN NaN NaN 102.66 1 106.44 105.94 106.94 3.7788 0 0 0 0.40746 1 25261 25261 0.69038 0 1 27670 8049 17443 17452 32083 32083 0.0969099380431544 MRVRRIYK 8 Unmodified _MRVRRIYK_ 0 0 0 REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF MSMS UPN47_class_I_Rep_3 4 561.7879028320312 2 561.339852 1120.66515 NaN NaN NaN NaN NaN NaN NaN 76.123 1 79.38 78.88 79.88 3.2573 0 0 0 0.40746 1 18915 18915 0.69038 0 1 + 27671 19998 17444 17453 32084 32084 0.10964585955866823 MRVRRIYK 8 Unmodified _MRVRRIYK_ 0 0 0 REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF MSMS UPN48_class_I_Rep_3 7 561.341796875 2 561.339852 1120.66515 NaN NaN NaN NaN NaN NaN NaN 46.802 1 50.439 49.939 50.939 3.6363 0 0 0 0.40746 1 9118 9118 0.69038 0.088878 1 + 27672 19998 17444 17453 32085 32085 0.10964585955866823 MRVRRIYK 8 Unmodified _MRVRRIYK_ 0 0 0 REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF REV__ENST00000561773.1_1_15:66671752-66672088:-|nuORF MSMS UPN48_class_I_Rep_3 7 561.2960815429688 2 561.339852 1120.66515 NaN NaN NaN NaN NaN NaN NaN 76.817 1 80.401 79.901 80.901 3.5831 0 0 0 0.40625 1 18108 18108 2.3027 0 1 + 27673 19998 17444 17453 32086 32086 0.10964585955866823 MRVSLFRLC 9 Unmodified _MRVSLFRLC_ 0 0 0 HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|4|1|sense HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|4|1|sense HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 562.8358764648438 2 562.806996 1123.59944 NaN NaN NaN NaN NaN NaN NaN 14.228 1 17.598 17.098 18.098 3.3697 0 0 0 0.4029 1 502 502 0 0 1 27674 8419 17445 17454 32087 32087 0.04258428718685536 MRVSLFRLC 9 Unmodified _MRVSLFRLC_ 0 0 0 HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|4|1|sense HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|4|1|sense HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 562.8071899414062 2 562.806996 1123.59944 NaN NaN NaN NaN NaN NaN NaN 14.349 1 17.719 17.219 18.219 3.3697 0 0 0 0.4029 1 529 529 0 0 1 27675 8419 17445 17454 32088 32088 0.04258428718685536 MRVVPLRYKRK 11 Unmodified _MRVVPLRYKRK_ 0 0 0 REV__L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|26|2|sense REV__L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|26|2|sense MSMS UPN48_class_I_Rep_1 5 482.2996826171875 3 482.634374 1444.88129 NaN NaN NaN NaN NaN NaN NaN 104.86 1 108.49 107.99 108.99 3.6247 0 0 0 0.38417 1 25265 25265 1.2148 0.10508 1 + 27676 27954 17446 17455 32089 32089 0.17664722069685013 MRWPEEVND 9 Unmodified _MRWPEEVND_ 0 0 0 REV__ENSG00000114771|ENST00000232892|AADAC REV__ENSG00000114771|ENST00000232892|AADAC MULTI-MSMS UPN47_class_I_Rep_1 2 588.260986328125 2 588.26113 1174.50771 0.04017 2.363E-05 -0.68877 -0.00040518 -0.6486 -0.00038155 588.2606669126162 42.976 0.81294 46.663 46.225 47.038 3.6875 113 57 3 0 0 0 0.47493 1 8762 8762 3.2813 0.28607 1 148830 + 27677 18535 17447 17456 32090 32090 -0.07256583164826225 MRWPEEVND 9 Unmodified _MRWPEEVND_ 0 0 0 REV__ENSG00000114771|ENST00000232892|AADAC REV__ENSG00000114771|ENST00000232892|AADAC MULTI-MSMS UPN47_class_I_Rep_2 3 588.2610473632812 2 588.26113 1174.50771 0.12475 7.3385E-05 -0.81433 -0.00047904 -0.68959 -0.00040566 588.2605605535553 43.175 0.66579 46.533 46.271 46.936 3.358 85 45 2 0 0 0 0.47493 2 8983 8815;8983 3.2813 1.6526 1 160110 + 27678 18535 17447 17456 32091;32092 32092 -0.07256583164826225 MRWPEEVND 9 Unmodified _MRWPEEVND_ 0 0 0 REV__ENSG00000114771|ENST00000232892|AADAC REV__ENSG00000114771|ENST00000232892|AADAC MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 588.26113 1174.50771 0.12475 7.3385E-05 -0.81433 -0.00047904 -0.68959 -0.00040566 588.2605605535553 43.175 0.66579 46.533 46.271 46.936 3.358 -0.009858 0.00019734 NaN 3.2813 85 45 2 NaN NaN NaN NaN 0 NaN NaN 0 160110 + 27679 18535 17447 17456 -0.07256583164826225 MRWPEEVND 9 Unmodified _MRWPEEVND_ 0 0 0 REV__ENSG00000114771|ENST00000232892|AADAC REV__ENSG00000114771|ENST00000232892|AADAC MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 588.26113 1174.50771 0.13556 7.9745E-05 -1.1119 -0.00065406 -0.97629 -0.00057432 588.2605366999475 43.311 0.72079 46.553 46.24 46.961 3.2419 0.009858 -0.0001527 NaN 3.2813 81 46 2 NaN NaN NaN NaN 0 NaN NaN 0 174110 + 27680 18535 17447 17456 -0.07256583164826225 MRWPTEWT 8 Unmodified _MRWPTEWT_ 0 0 0 REV__ENST00000335148.7_1_12:22796706-22796763:+|nuORF REV__ENST00000335148.7_1_12:22796706-22796763:+|nuORF MSMS UPN47_class_I_Rep_1 2 553.7493286132812 2 553.758027 1105.5015 NaN NaN NaN NaN NaN NaN NaN 35.859 1 39.536 39.036 40.036 3.6762 0 0 0 0.39819 1 6626 6626 8.5933 4.264 1 + 27681 21792 17448 17457 32093 32093 -0.047030566056946554 MRYLPLWCY 9 Unmodified _MRYLPLWCY_ 0 0 0 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 MSMS UPN46_class_I_Rep_3 1 622.802734375 2 622.80138 1243.58821 NaN NaN NaN NaN NaN NaN NaN 86.028 1 86.028 85.528 86.528 0 0 0 0 0.39428 1 20555 20555 2.0598 0.40713 1 27682 3154 17449 17458 32094 32094 -0.02384393375473337 MRYSEKWKVK 10 Unmodified _MRYSEKWKVK_ 0 0 0 MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2690734863281 3 452.248185 1353.72273 NaN NaN NaN NaN NaN NaN NaN 43.879 1 43.879 43.379 44.379 0 0 0 0 0.53105 1 8797 8797 2.086 1.3095 1 27683 16104 17450 17459 32095 32095 0.060013833707444064 MSALTSLQY 9 Unmodified _MSALTSLQY_ 0 0 0 L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|13|1|sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|13|1|sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 507.2508850097656 2 507.252243 1012.48993 NaN NaN NaN NaN NaN NaN NaN 67.279 1 70.47 69.97 70.97 3.1914 0 0 0 0.10315 1 16280 16280 24.021 0.87215 1 27684 11911 17451 17460 32096 32096 -0.015812984196941215 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_1 2 554.1763305664062 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 24.78 1 28.53 28.03 29.03 3.7495 0 0 0 0.53105 1 3297 3297 0.40072 0.40072 1 27685 2693 17452 17461 32097 32097 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_2 3 554.1763916015625 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 18.352 1 21.742 21.242 22.242 3.3898 0 0 0 0.53105 1 1536 1536 0.40072 0.40072 1 27686 2693 17452 17461 32098 32098 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_2 3 554.176513671875 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 21.793 1 25.217 24.717 25.717 3.4241 0 0 0 0.53105 1 2488 2488 0.40072 0.40072 1 27687 2693 17452 17461 32099 32099 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_3 4 554.2451171875 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 22.205 1 25.555 25.055 26.055 3.3496 0 0 0 0.53105 1 2618 2618 0.40072 0.40072 1 27688 2693 17452 17461 32100 32100 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN48_class_I_Rep_1 5 554.2754516601562 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 116.77 1 120.39 119.89 120.89 3.6254 0 0 0 0.53105 1 28444 28444 0.40072 0.40072 1 27689 2693 17452 17461 32101 32101 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN48_class_I_Rep_2 6 554.1751098632812 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 117.03 1 120.69 120.19 121.19 3.6607 0 0 0 0.53105 1 28040 28040 0.40072 0.40072 1 27690 2693 17452 17461 32102 32102 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN48_class_I_Rep_3 7 554.1770629882812 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 112.51 1 116.17 115.67 116.67 3.6614 0 0 0 0.53105 1 26732 26732 0.40072 0.40072 1 27691 2693 17452 17461 32103 32103 -0.21343238958866095 MSCECEADGY 10 Unmodified _MSCECEADGY_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN48_class_I_Rep_3 7 554.176513671875 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 116.56 1 120.19 119.69 120.69 3.6312 0 0 0 0.53105 1 27739 27739 0.40072 0.40072 1 27692 2693 17452 17461 32104 32104 -0.21343238958866095 MSCFVYFG 8 Unmodified _MSCFVYFG_ 0 0 0 L1MB8_dup15674|chr20:21317851-21319789:-|2.3863716323306075|0.0668452328556376|5.16|151.0|113|2|anti-sense L1MB8_dup15674|chr20:21317851-21319789:-|2.3863716323306075|0.0668452328556376|5.16|151.0|113|2|anti-sense L1MB8_dup15674|chr20:21317851-21319789:-|2.3863716323306075|0.0668452328556376|5.16|151.0|113|2|anti-sense MSMS UPN47_class_I_Rep_3 4 476.814697265625 2 477.198425 952.382296 NaN NaN NaN NaN NaN NaN NaN 26.001 1 29.349 28.849 29.849 3.3478 0 0 0 0.40738 1 3740 3740 0.79363 0 1 27693 10962 17453 17462 32105 32105 -0.09579966554758812 MSENIEYLL 9 Unmodified _MSENIEYLL_ 0 0 0 L1PB1_dup2159|chr3:60661060-60662796:-|1.9578895712522515|0.1212097316035474|4.01|151.0|75|2|anti-sense L1PB1_dup2159|chr3:60661060-60662796:-|1.9578895712522515|0.1212097316035474|4.01|151.0|75|2|anti-sense L1PB1_dup2159|chr3:60661060-60662796:-|1.9578895712522515|0.1212097316035474|4.01|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2867431640625 2 556.270632 1110.52671 NaN NaN NaN NaN NaN NaN NaN 58.598 1 62.015 61.515 62.515 3.4171 0 0 0 0.38478 1 13543 13543 4.3292 0 1 27694 15067 17454 17463 32106 32106 -0.02413046593778745 MSFLPPFFF 9 Unmodified _MSFLPPFFF_ 0 0 0 MLT1J_dup7889|chr9:236054-236490:-|1.2171850269159838|0.0060362134020969|7.66|149.0|14|3|sense MLT1J_dup7889|chr9:236054-236490:-|1.2171850269159838|0.0060362134020969|7.66|149.0|14|3|sense MLT1J_dup7889|chr9:236054-236490:-|1.2171850269159838|0.0060362134020969|7.66|149.0|14|3|sense MSMS UPN47_class_I_Rep_1 2 566.7787475585938 2 566.780439 1131.54633 NaN NaN NaN NaN NaN NaN NaN 27.879 1 31.645 31.145 32.145 3.7662 0 0 0 0.39326 1 4215 4215 2.3027 0.82083 1 27695 16463 17455 17464 32107 32107 -0.01418625792371131 MSFSLSVYSF 10 Unmodified _MSFSLSVYSF_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|42|2|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|42|2|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.270263671875 2 584.273175 1166.5318 0.51825 0.0003028 -0.84685 -0.00049479 -0.3286 -0.00019199 584.2727113443932 63.666 0.19582 67.175 67.11 67.306 3.5091 16 15 2 0 0 0 0.48573 2 14264 14259;14264 13.042 2.9685 1 83825 27696 7808 17456 17465 32108;32109 32109 -0.04480742731175269 MSFSLSVYSF 10 Unmodified _MSFSLSVYSF_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|42|2|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|42|2|anti-sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 584.2742919921875 2 584.273175 1166.5318 NaN NaN NaN NaN NaN NaN NaN 63.521 1 67.03 66.53 67.53 3.5091 0 0 0 0.53105 1 14208 14208 12.241 3.4953 1 27697 7808 17456 17465 32110 32110 -0.04480742731175269 MSGMFPCALLS 11 Unmodified _MSGMFPCALLS_ 0 0 0 REV__MER11A_dup704|chr11:47744903-47745860:+|1.4599685894014998|0.1710052402074521|3.09|151.0|43|1|anti-sense REV__MER11A_dup704|chr11:47744903-47745860:+|1.4599685894014998|0.1710052402074521|3.09|151.0|43|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 578.7627563476562 2 578.763606 1155.51266 0.26925 0.00015583 0.28719 0.00016621 0.55643 0.00032204 578.763156384984 51.516 0.88113 55.109 54.757 55.639 3.5933 95 47 3 0 0 0 0.37961 1 11456 11456 10.8 0.64894 1 258310 + 27698 31088 17457 17466 32111 32111 -0.058877386180711255 MSIVDLSCFL 10 Unmodified _MSIVDLSCFL_ 0 0 0 L1PA6_dup5190|chr15:34165959-34172091:+|3.521749412862224|0.065556029046141|5.75|151.0|273|2|anti-sense L1PA6_dup5190|chr15:34165959-34172091:+|3.521749412862224|0.065556029046141|5.75|151.0|273|2|anti-sense L1PA6_dup5190|chr15:34165959-34172091:+|3.521749412862224|0.065556029046141|5.75|151.0|273|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2810668945312 2 564.277403 1126.54025 NaN NaN NaN NaN NaN NaN NaN 39.209 1 42.588 42.088 43.088 3.3785 0 0 0 0.53105 1 7675 7675 1.4819 0 1 27699 14660 17458 17467 32112 32112 -0.017955120861870455 MSLEVFPLF 9 Unmodified _MSLEVFPLF_ 0 0 0 L1M1_dup695|chr2:97254476-97256073:-|1.2584295962685943|0.261251001927305|2.27|151.0|80|1|anti-sense L1M1_dup695|chr2:97254476-97256073:-|1.2584295962685943|0.261251001927305|2.27|151.0|80|1|anti-sense L1M1_dup695|chr2:97254476-97256073:-|1.2584295962685943|0.261251001927305|2.27|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7841186523438 2 541.783179 1081.5518 NaN NaN NaN NaN NaN NaN NaN 53.845 1 57.359 56.859 57.859 3.5143 0 0 0 0.28335 1 11342 11342 11.64 2.2929 1 27700 8607 17459 17468 32113 32113 0.01429052999446867 MSLKRMLIK 9 Unmodified _MSLKRMLIK_ 0 0 0 REV__L1ME4b_dup13261|chr10:75588633-75589458:-|1.624309952524419|0.0068512713691708|7.89|149.0|21|2|sense REV__L1ME4b_dup13261|chr10:75588633-75589458:-|1.624309952524419|0.0068512713691708|7.89|149.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 560.3428344726562 2 560.340672 1118.66679 NaN NaN NaN NaN NaN NaN NaN 78.986 1 82.521 82.021 83.021 3.5352 0 0 0 0.38784 1 18840 18840 3.5965 0.60125 1 + 27701 28254 17460 17469 32114 32114 0.11220458929597044 MSLKRMLIK 9 Unmodified _MSLKRMLIK_ 0 0 0 REV__L1ME4b_dup13261|chr10:75588633-75589458:-|1.624309952524419|0.0068512713691708|7.89|149.0|21|2|sense REV__L1ME4b_dup13261|chr10:75588633-75589458:-|1.624309952524419|0.0068512713691708|7.89|149.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 560.3429565429688 2 560.340672 1118.66679 NaN NaN NaN NaN NaN NaN NaN 78.492 1 82.115 81.615 82.615 3.6222 0 0 0 0.38784 1 18620 18620 3.5965 0.60125 1 + 27702 28254 17460 17469 32115 32115 0.11220458929597044 MSLKRMLIK 9 Unmodified _MSLKRMLIK_ 0 0 0 REV__L1ME4b_dup13261|chr10:75588633-75589458:-|1.624309952524419|0.0068512713691708|7.89|149.0|21|2|sense REV__L1ME4b_dup13261|chr10:75588633-75589458:-|1.624309952524419|0.0068512713691708|7.89|149.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 560.3406372070312 2 560.340672 1118.66679 NaN NaN NaN NaN NaN NaN NaN 78.955 1 82.588 82.088 83.088 3.6331 0 0 0 0.38784 1 18740 18740 3.5965 0 1 + 27703 28254 17460 17469 32116 32116 0.11220458929597044 MSLLECLGQI 10 Unmodified _MSLLECLGQI_ 0 0 0 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant;RYR1|p.V4024Gfs*7|1|0.07|ENSG00000196218|chr19:38546503-38546503|T/-|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 553.7828979492188 2 553.782853 1105.55115 0.4658 0.00025795 -0.15897 -8.8036E-05 0.30683 0.00016992 554.2842126223304 76.525 0.48985 79.847 79.67 80.16 3.3216 74 51 2 0 0 0 0.53004 1 18971 18971 8.1555 0 1 120440 27704 5289 17461 17470 32117 32117 0.0025989028808908188 MSLLECLGQI 10 Unmodified _MSLLECLGQI_ 0 0 0 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant;RYR1|p.V4024Gfs*7|1|0.07|ENSG00000196218|chr19:38546503-38546503|T/-|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant RYR1|p.L3256Afs*55|1|0.07|ENSG00000196218|chr19:38517432-38517433|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 553.7845458984375 2 553.782853 1105.55115 0.4588 0.00025408 -0.42643 -0.00023615 0.032369 1.7925E-05 553.7826825396432 76.617 0.50264 79.886 79.591 80.094 3.269 89 50 2 0 0 0 0.55148 2 18994 18994;19060 5.2969 0 1 92410 27705 5289 17461 17470 32118;32119 32118 0.0025989028808908188 MSNTVFRKN 9 Oxidation (M) _M(Oxidation (M))SNTVFRKN_ M(1)SNTVFRKN M(46)SNTVFRKN 0 0 1 nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-4|PIP5K1C nc|ENSG00000186111|O60331-4|PIP5K1C MSMS UPN47_class_I_Rep_2 3 556.77197265625 2 556.77949 1111.54443 NaN NaN NaN NaN NaN NaN NaN 35.372 1 38.797 38.297 39.297 3.4253 0 0 0 0.029402 1 6513 6513 45.7 21.679 1 27706 5140 17462 17471 32120 32120 158 -0.006882865482793932 MSNTVFRKN 9 Unmodified _MSNTVFRKN_ 0 0 0 nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-4|PIP5K1C nc|ENSG00000186111|O60331-4|PIP5K1C MSMS UPN47_class_I_Rep_2 3 548.7791137695312 2 548.782033 1095.54951 NaN NaN NaN NaN NaN NaN NaN 39.665 1 43.044 42.544 43.544 3.3785 0 0 0 0.37692 1 7816 7816 6.2058 0.97511 1 27707 5140 17462 17472 32121 32121 0.005560173143521752 MSPHYLPD 8 Unmodified _MSPHYLPD_ 0 0 0 REV__ENST00000596876.1_1_19:51411491-51411737:-|nuORF REV__ENST00000596876.1_1_19:51411491-51411737:-|nuORF MSMS UPN47_class_I_Rep_2 3 480.21685791015625 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 118.88 1 122.36 121.86 122.86 3.4793 0 0 0 0.40604 1 29104 29104 2.5775 0 1 + 27708 20236 17463 17473 32122 32122 -0.059021232797022094 MSPLFQFPCFF 11 Unmodified _MSPLFQFPCFF_ 0 0 0 REV__L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|142|2|anti-sense REV__L1MA2_dup3550|chr9:100037831-100041266:+|1.642490690727763|0.132372317162838|3.63|151.0|142|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 455.21185302734375 3 455.211972 1362.61409 0.066473 3.0259E-05 -0.45108 -0.00020534 -0.38461 -0.00017508 455.21174841733824 36.465 0.81982 39.972 39.657 40.477 3.507 130 87 2 0 0 0 0.54468 2 6120 6120;6153 6.6235 6.6235 1 209880 + 27709 24856 17464 17474 32123;32124 32123 -0.05271543923890931 MSQKEERI 8 Unmodified _MSQKEERI_ 0 0 0 ENST00000262053.7_1_12:51213432-51213504:+|nuORF ENST00000262053.7_1_12:51213432-51213504:+|nuORF ENST00000262053.7_1_12:51213432-51213504:+|nuORF MSMS UPN48_class_I_Rep_3 7 510.7588806152344 2 510.760766 1019.50698 NaN NaN NaN NaN NaN NaN NaN 53.233 1 56.817 56.317 57.317 3.5836 0 0 0 0.38112 1 11074 11074 14.838 0.43289 1 27710 5963 17465 17475 32125 32125 -0.0019937781389671727 MSRDLATALQ 10 Unmodified _MSRDLATALQ_ 0 0 0 AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|4|1|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|4|1|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.7890625 2 553.287148 1104.55974 0.53389 0.0002954 0.51307 0.00028388 1.047 0.00057927 553.2873437203585 75.677 0.54028 79.176 78.876 79.416 3.4996 87 51 2 0 0 0 0.53004 2 17908 17908;17993 8.1555 0 1 143430 27711 383 17466 17476 32126;32127 32126 0.011645802489056223 MSRDLATALQ 10 Unmodified _MSRDLATALQ_ 0 0 0 AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|4|1|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|4|1|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 553.2877197265625 2 553.287148 1104.55974 0.43094 0.00023843 0.564 0.00031206 0.99494 0.00055049 553.2873659578804 75.571 0.64857 79.137 78.82 79.468 3.5659 116 68 2 0 0 0 0.4561 2 17798 17687;17798 15.248 1.3424 1 176570 27712 383 17466 17476 32128;32129 32129 0.011645802489056223 MSSHILTSLH 10 Unmodified _MSSHILTSLH_ 0 0 0 L1ME3E_dup721|chr2:171543676-171544503:-|1.047752110058152|0.073296455190579|3.84|151.0|67|3|anti-sense L1ME3E_dup721|chr2:171543676-171544503:-|1.047752110058152|0.073296455190579|3.84|151.0|67|3|anti-sense L1ME3E_dup721|chr2:171543676-171544503:-|1.047752110058152|0.073296455190579|3.84|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_2 6 563.2877197265625 2 563.289691 1124.56483 NaN NaN NaN NaN NaN NaN NaN 53.912 1 57.494 56.994 57.994 3.5817 0 0 0 0.53105 1 11344 11344 1.4819 0.28856 1 27713 12811 17467 17477 32130 32130 0.007528841115345131 MSSTSPSHQQ 10 Unmodified _MSSTSPSHQQ_ 0 0 0 REV__ENST00000324225.8_1_11:117052677-117053271:+|nuORF REV__ENST00000324225.8_1_11:117052677-117053271:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 545.2352905273438 2 545.235113 1088.45567 0.15152 8.2615E-05 0.11203 6.1085E-05 0.26356 0.0001437 545.2358525660071 44.292 1.3779 47.647 47.313 48.691 3.3556 190 85 4 0 0 0 0.51003 1 9403 9403 10.824 10.824 1 437770 + 27714 21754 17468 17478 32131 32131 -0.08501746578576785 MSSTSPSHQQ 10 Unmodified _MSSTSPSHQQ_ 0 0 0 REV__ENST00000324225.8_1_11:117052677-117053271:+|nuORF REV__ENST00000324225.8_1_11:117052677-117053271:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 545.235113 1088.45567 0.15152 8.2615E-05 0.11203 6.1085E-05 0.26356 0.0001437 545.2358525660071 44.292 1.3779 47.647 47.313 48.691 3.3556 -0.051163 -0.00023274 NaN 10.824 190 85 4 NaN NaN NaN NaN 0 NaN NaN 0 437770 + 27715 21754 17468 17478 -0.08501746578576785 MSWITFWLL 9 Unmodified _MSWITFWLL_ 0 0 0 L1ME4a_dup26151|chr13:51699532-51700270:+|1.6201626311441129|0.0320997709192873|5.66|151.0|54|3|anti-sense L1ME4a_dup26151|chr13:51699532-51700270:+|1.6201626311441129|0.0320997709192873|5.66|151.0|54|3|anti-sense L1ME4a_dup26151|chr13:51699532-51700270:+|1.6201626311441129|0.0320997709192873|5.66|151.0|54|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 598.8115234375 2 598.81227 1195.60999 0.49005 0.00029345 -1.5538 -0.00093042 -1.0637 -0.00063697 598.8113962498195 68.746 0.24948 72.254 72.093 72.343 3.5083 28 17 2 0 0 0 0.41259 1 15842 15842 7.2892 1.0834 1 548840 27716 12865 17469 17479 32132 32132 0.020007346447300733 MSYADDDCTD 10 Unmodified _MSYADDDCTD_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MSMS UPN47_class_I_Rep_2 3 568.1788940429688 2 568.181354 1134.34816 NaN NaN NaN NaN NaN NaN NaN 119.78 1 123.26 122.76 123.76 3.4793 0 0 0 0.53105 1 29354 29354 0.40072 0.40072 1 27717 4969 17470 17480 32133 32133 -0.21364504295002007 MSYWMMHHH 9 Unmodified _MSYWMMHHH_ 0 0 0 REV__L1MDa_dup2964|chr7:139908384-139909253:-|1.297011848125412|0.0464419967845871|4.8|151.0|12|1|sense REV__L1MDa_dup2964|chr7:139908384-139909253:-|1.297011848125412|0.0464419967845871|4.8|151.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 630.2467041015625 2 630.248988 1258.48342 NaN NaN NaN NaN NaN NaN NaN 21.323 1 24.989 24.489 25.489 3.6667 0 0 0 0.4007 1 1982 1982 0.52476 0.066424 1 + 27718 27517 17471 17481 32134 32134 -0.1354783812369078 MTEWFMCI 8 Unmodified _MTEWFMCI_ 0 0 0 ENST00000475650.1_1_16:30370373-30370970:-|nuORF;ENSG00000169221|ENST00000409939|TBC1D10B ENST00000475650.1_1_16:30370373-30370970:-|nuORF ENST00000475650.1_1_16:30370373-30370970:-|nuORF MSMS UPN48_class_I_Rep_1 5 530.7190551757812 2 530.718667 1059.42278 NaN NaN NaN NaN NaN NaN NaN 66.034 1 69.486 68.986 69.986 3.4516 0 0 0 0.40738 1 15069 15069 0.79363 0 1 27719 4411 17472 17482 32135 32135 -0.10455368226644168 MTFVSNGLML 10 Unmodified _MTFVSNGLML_ 0 0 0 REV__L1MC5_dup14291|chr19:34199431-34199752:+|1.4930579943972673|0.0417012085617566|5.16|151.0|10|3|sense REV__L1MC5_dup14291|chr19:34199431-34199752:+|1.4930579943972673|0.0417012085617566|5.16|151.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 556.7916870117188 2 556.77757 1111.54059 NaN NaN NaN NaN NaN NaN NaN 38.96 1 42.69 42.19 43.19 3.7297 0 0 0 0.53105 1 6856 6856 3.2813 0.39209 1 + 27720 27065 17473 17483 32136 32136 -0.010720923663257054 MTHNLLLNY 9 Oxidation (M) _M(Oxidation (M))THNLLLNY_ M(1)THNLLLNY M(54)THNLLLNY 0 0 1 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENST00000520170.1_1_6:114281018-114292096:-|nuORF;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_1 5 567.7843627929688 2 567.784241 1133.55393 0.42119 0.00023915 -0.037197 -2.112E-05 0.38399 0.00021803 567.784188144735 51.143 0.899 54.667 54.359 55.258 3.5246 162 63 4 0 0 0 0.037922 3 10576 10495;10535;10576 53.833 17.706 1 974360 27721 2184 17474 17484 32137;32138;32139 32139 74 -0.007505182627483009 MTHNLLLNY 9 Oxidation (M) _M(Oxidation (M))THNLLLNY_ M(1)THNLLLNY M(60)THNLLLNY 0 0 1 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENST00000520170.1_1_6:114281018-114292096:-|nuORF;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_2 6 567.78466796875 2 567.784241 1133.55393 0.48166 0.00027348 -0.0091472 -5.1937E-06 0.47252 0.00026829 567.784244248975 51.039 0.98972 54.707 54.297 55.287 3.6679 147 67 3 0 0 0 0.025281 2 10497 10459;10497 60.074 16.216 1 880320 27722 2184 17474 17484 32140;32141 32141 74 -0.007505182627483009 MTHNLLLNY 9 Oxidation (M) _M(Oxidation (M))THNLLLNY_ M(1)THNLLLNY M(56)THNLLLNY 0 0 1 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENST00000520170.1_1_6:114281018-114292096:-|nuORF;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS UPN48_class_I_Rep_3 7 567.7843627929688 2 567.784241 1133.55393 0.33237 0.00018871 0.070284 3.9906E-05 0.40265 0.00022862 567.7842955467177 51.136 0.94528 54.746 54.427 55.372 3.6105 171 72 4 0 0 0 0.033731 4 10421 10421;10459;10500;10537 55.503 19.376 1 891880 27723 2184 17474 17484 32142;32143;32144;32145 32142 74 -0.007505182627483009 MTIRFDSSF 9 Unmodified _MTIRFDSSF_ 0 0 0 ENSG00000165512|ENST00000298299|ZNF22 ENSG00000165512|ENST00000298299|ZNF22 ENSG00000165512|ENST00000298299|ZNF22 MULTI-SECPEP UPN48_class_I_Rep_3 7 552.7651977539062 2 552.263142 1102.51173 0.38034 0.00021005 -0.49273 -0.00027212 -0.11239 -6.2069E-05 552.2627893525886 60.496 0.27576 64.013 63.791 64.067 3.5169 34 23 2 0 0 0 0.11892 1 13298 13298 10.151 2.8613 1 115840 27724 4183 17475 17485 32146 32146 -0.035424936711251576 MTKKHMKK 8 Unmodified _MTKKHMKK_ 0 0 0 L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|34|3|sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|34|3|sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|34|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.2968139648438 2 516.296265 1030.57798 0.31487 0.00016257 -0.59013 -0.00030468 -0.27526 -0.00014212 516.2961200943915 82.648 0.091896 82.648 82.605 82.697 0 14 9 2 0 0 0 0.82752 1 19596 19596 0.69038 0 1 156150 27725 15341 17476 17486 32147 32147 0.06391043689927756 MTKKHMKK 8 Unmodified _MTKKHMKK_ 0 0 0 L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|34|3|sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|34|3|sense L1PB4_dup6428|chr15:64289559-64290696:+|1.0669433745954506|0.0113611943245416|6.55|151.0|34|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 516.296265 1030.57798 0.30877 0.00015942 1.0601 0.00054732 1.3689 0.00070673 516.2981339594676 79.09 0.044296 82.385 82.348 82.393 3.295 -0.13148 0.001663 NaN 0.69038 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 33827 27726 15341 17476 17486 0.06391043689927756 MTLIWQIYWWW 11 Unmodified _MTLIWQIYWWW_ 0 0 0 REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|56|3|anti-sense REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|56|3|anti-sense MSMS UPN48_class_I_Rep_1 5 542.6027221679688 3 542.603969 1624.79008 NaN NaN NaN NaN NaN NaN NaN 34.04 1 37.56 37.06 38.06 3.5201 0 0 0 0.38417 1 5393 5393 0.094841 0.011491 1 + 27727 26574 17477 17487 32148 32148 0.0026741358174149354 MTLKVHAT 8 Unmodified _MTLKVHAT_ 0 0 0 REV__L1ME2_dup3124|chr3:177162457-177162687:+|1.006326178034013|0.0026214920374482|8.58|151.0|14|2|anti-sense REV__L1ME2_dup3124|chr3:177162457-177162687:+|1.006326178034013|0.0026214920374482|8.58|151.0|14|2|anti-sense MSMS UPN48_class_I_Rep_2 6 450.7540283203125 2 450.752213 899.489873 NaN NaN NaN NaN NaN NaN NaN 101.77 1 105.5 105 106 3.7252 0 0 0 0.40625 1 24131 24131 2.3027 0 1 + 27728 27857 17478 17488 32149 32149 0.036107463709754484 MTLLVMLI 8 Unmodified _MTLLVMLI_ 0 0 0 L1MC4_dup325|chr1:39312850-39313779:-|1.7383545945302974|0.0351710852273043|5.63|150.0|49|2|anti-sense L1MC4_dup325|chr1:39312850-39313779:-|1.7383545945302974|0.0351710852273043|5.63|150.0|49|2|anti-sense L1MC4_dup325|chr1:39312850-39313779:-|1.7383545945302974|0.0351710852273043|5.63|150.0|49|2|anti-sense MSMS UPN47_class_I_Rep_1 2 467.262451171875 2 467.279218 932.543882 NaN NaN NaN NaN NaN NaN NaN 44.958 1 48.658 48.158 49.158 3.6999 0 0 0 0.40404 1 9397 9397 5.2307 0 1 27729 11489 17479 17489 32150 32150 0.07491202478320247 MTLRGHRP 8 Unmodified _MTLRGHRP_ 0 0 0 MLT1A0_dup19292|chr19:5098581-5098936:+|1.309431008797216|0.1050950906243914|3.64|150.0|16|2|anti-sense MLT1A0_dup19292|chr19:5098581-5098936:+|1.309431008797216|0.1050950906243914|3.64|150.0|16|2|anti-sense MLT1A0_dup19292|chr19:5098581-5098936:+|1.309431008797216|0.1050950906243914|3.64|150.0|16|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 484.2669372558594 2 484.266353 966.518153 0.23183 0.00011227 0.51027 0.00024711 0.7421 0.00035937 484.2668626894149 94.684 0.64182 98.586 98.231 98.873 3.9016 120 85 2 0 0 0 0.82752 3 22401 22401;22432;22471 2.0598 2.0598 1 483020 27730 16252 17480 17490 32151;32152;32153 32151 0.03355489070918338 MTLVSVQYET 10 Unmodified _MTLVSVQYET_ 0 0 0 REV__L1MD2_dup8396|chr13:95727532-95728658:-|1.5273687787648522|0.0214634889074394|6.15|151.0|38|3|sense REV__L1MD2_dup8396|chr13:95727532-95728658:-|1.5273687787648522|0.0214634889074394|6.15|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 585.7892456054688 2 585.789189 1169.56383 NaN NaN NaN NaN NaN NaN NaN 117.96 1 117.96 117.46 118.46 0 0 0 0 0.53105 1 29257 29257 1.3295 0.63916 1 + 27731 27440 17481 17491 32154 32154 -0.0141737504802677 MTTTSVSSWPY 11 Unmodified _MTTTSVSSWPY_ 0 0 0 ENSG00000171659|ENST00000378142|GPR34 ENSG00000171659|ENST00000378142|GPR34 ENSG00000171659|ENST00000378142|GPR34 MSMS UPN47_class_I_Rep_2 3 630.2843627929688 2 630.284271 1258.55399 NaN NaN NaN NaN NaN NaN NaN 67.712 1 70.975 70.475 71.475 3.2636 0 0 0 0.38417 1 16344 16344 2.9952 0.69251 1 27732 4537 17482 17492 32155 32155 -0.06494563053388447 MTVISDVIL 9 Unmodified _MTVISDVIL_ 0 0 0 ENSG00000181616|ENST00000322653|OR52H1 ENSG00000181616|ENST00000322653|OR52H1 ENSG00000181616|ENST00000322653|OR52H1 MULTI-MSMS UPN47_class_I_Rep_1 2 495.78045654296875 2 495.780636 989.546719 0.2087 0.00010347 -0.20007 -9.9193E-05 0.0086298 4.2785E-06 495.7804526397791 82.572 0.16188 86.11 85.986 86.148 3.5386 21 17 2 0 0 0 0.41259 1 20612 20612 7.2892 0 1 52791 27733 4921 17483 17493 32156 32156 0.051527491368233314 MTVSTVCLEI 10 Unmodified _MTVSTVCLEI_ 0 0 0 L1ME4b_dup225|chr1:31924913-31925241:+|1.5968223063474247|0.1224725783723101|3.7|151.0|11|3|sense L1ME4b_dup225|chr1:31924913-31925241:+|1.5968223063474247|0.1224725783723101|3.7|151.0|11|3|sense L1ME4b_dup225|chr1:31924913-31925241:+|1.5968223063474247|0.1224725783723101|3.7|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 548.2752075195312 2 548.27486 1094.53517 0.21358 0.0001171 -0.23344 -0.00012799 -0.019859 -1.0888E-05 548.2747610711909 45.751 0.82825 49.105 48.567 49.395 3.3534 82 52 2 0 0 0 0.52083 1 9647 9647 9.3831 9.3831 1 163800 27734 12916 17484 17494 32157 32157 -0.008318159487998855 MVCPLAKLTF 10 Unmodified _MVCPLAKLTF_ 0 0 0 L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|252|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|252|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.8042602539062 2 561.806131 1121.59771 0.48643 0.00027328 -0.83366 -0.00046835 -0.34723 -0.00019507 561.8053807831083 74.626 0.099663 78.216 78.13 78.23 3.59 15 9 2 0 0 0 0.52083 1 17571 17571 9.3831 0.63772 1 81364 27735 9685 17485 17495 32158 32158 0.04177374910022991 MVDISKMHM 9 Unmodified _MVDISKMHM_ 0 0 0 ENSG00000104783|ENST00000648319|KCNN4 ENSG00000104783|ENST00000648319|KCNN4 ENSG00000104783|ENST00000648319|KCNN4 MSMS UPN47_class_I_Rep_2 3 546.2547607421875 2 546.255948 1090.49734 NaN NaN NaN NaN NaN NaN NaN 40.704 1 44.076 43.576 44.576 3.3712 0 0 0 0.39598 1 8132 8132 1.6526 0.32309 1 27736 1703 17486 17496 32159 32159 -0.04428605415273523 MVDKWRER 8 Unmodified _MVDKWRER_ 0 0 0 REV__HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|3|1|sense REV__HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 560.304931640625 2 560.290025 1118.5655 NaN NaN NaN NaN NaN NaN NaN 53.372 1 56.891 56.391 57.391 3.5192 0 0 0 0.40643 1 11195 11195 2.0598 0.21551 1 + 27737 23376 17487 17497 32160 32160 0.010957235512478292 MVDLSWWR 8 Unmodified _MVDLSWWR_ 0 0 0 REV__L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|130|2|anti-sense REV__L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|130|2|anti-sense MSMS UPN48_class_I_Rep_3 7 546.7702026367188 2 546.768394 1091.52224 NaN NaN NaN NaN NaN NaN NaN 40.058 1 43.709 43.209 44.209 3.6509 0 0 0 0.40625 1 7078 7078 2.3027 0 1 + 27738 30565 17488 17498 32161 32161 -0.01986466226048833 MVDVMRRSG 9 Unmodified _MVDVMRRSG_ 0 0 0 REV__ENSG00000173120.15,KDM2A,chr11,+,I15.1,67231961,67240046|36|10.73|1|intron REV__ENSG00000173120.15,KDM2A,chr11,+,I15.1,67231961,67240046|36|10.73|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 526.2574462890625 2 525.762786 1049.51102 -0.12168 -6.3976E-05 1.7868 0.00093945 1.6652 0.00087548 525.7635162806937 31.469 0.47817 35.198 34.913 35.391 3.7293 38 33 2 0 0 0 0.46869 1 5257 5257 3.9444 0.3479 1 59182 + 27739 20471 17489 17499 32162 32162 -0.011756115918160503 MVDWFWLI 8 Unmodified _MVDWFWLI_ 0 0 0 ENST00000496184.1_1_7:1477093-1477677:-|nuORF;ENST00000479007.5_1_7:1474234-1478659:-|nuORF;nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2 ENST00000496184.1_1_7:1477093-1477677:-|nuORF ENST00000496184.1_1_7:1477093-1477677:-|nuORF MSMS UPN47_class_I_Rep_3 4 555.2985229492188 2 555.278063 1108.54157 NaN NaN NaN NaN NaN NaN NaN 83.569 1 86.919 86.419 87.419 3.35 0 0 0 0.40604 1 20963 20963 2.5775 0.27475 1 27740 4138 17490 17500 32163 32163 -0.008355099351092576 MVFPSGPGYQN 11 Unmodified _MVFPSGPGYQN_ 0 0 0 REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|36|2|sense REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|36|2|sense MSMS UPN47_class_I_Rep_2 3 598.7742309570312 2 598.773874 1195.53319 NaN NaN NaN NaN NaN NaN NaN 42.578 1 45.939 45.439 46.439 3.3611 0 0 0 0.38417 1 8697 8697 1.3295 0 1 + 27741 23843 17491 17501 32164 32164 -0.05675108642390114 MVHHNMHS 8 Unmodified _MVHHNMHS_ 0 0 0 REV__Cheshire_dup399|chr6:113953775-113954852:+|2.608057200485526|0.2932992985387524|3.15|150.0|4|1|sense REV__Cheshire_dup399|chr6:113953775-113954852:+|2.608057200485526|0.2932992985387524|3.15|150.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 496.7117919921875 2 496.713096 991.411639 NaN NaN NaN NaN NaN NaN NaN 117.69 1 121.29 120.79 121.79 3.6036 0 0 0 0.40738 1 29180 29180 0.79363 0.10326 1 + 27742 17410 17492 17502 32165 32165 -0.0844100948590949 MVHRRPRK 8 Unmodified _MVHRRPRK_ 0 0 0 REV__ENST00000426615.3_1_2:177042826-177043225:+|nuORF REV__ENST00000426615.3_1_2:177042826-177043225:+|nuORF MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.321994 1078.62944 NaN NaN NaN NaN NaN NaN NaN 38.806 1 38.806 38.306 39.306 0 0 0 0 0.40746 1 7415 7415 0.69038 0.088878 1 + 27743 22269 17493 17503 32166 32166 0.09326548498847842 MVHWLWFW 8 Unmodified _MVHWLWFW_ 0 0 0 L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|61|1|anti-sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|61|1|anti-sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|61|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.7936401367188 2 602.791672 1203.56879 NaN NaN NaN NaN NaN NaN NaN 13.198 1 16.73 16.23 17.23 3.5314 0 0 0 0.40738 1 208 208 0.79363 0.10326 1 27744 9965 17494 17504 32167 32167 -0.024849816040841688 MVHWTGEN 8 Unmodified _MVHWTGEN_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MULTI-MSMS UPN46_class_I_Rep_3 1 487.21368408203125 2 487.213452 972.412351 0.19924 9.7074E-05 0.59479 0.00028979 0.79403 0.00038686 487.21361935619257 56.784 0.41632 56.784 56.531 56.947 0 73 48 2 0 0 0 0.82752 1 12414 12414 2.5775 0.51773 1 251490 27745 5077 17495 17505 32168 32168 -0.07495891565213242 MVIFRVHV 8 Unmodified _MVIFRVHV_ 0 0 0 REV__MER6A_dup357|chr5:56839543-56840068:+|1.159451352589032|0.0226536444841322|5.68|150.0|3|1|sense REV__MER6A_dup357|chr5:56839543-56840068:+|1.159451352589032|0.0226536444841322|5.68|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 500.7922668457031 2 500.791672 999.568792 NaN NaN NaN NaN NaN NaN NaN 113.79 1 113.79 113.29 114.29 0 0 0 0 0.40738 1 28107 28107 0.79363 0 1 + 27746 31545 17496 17506 32169 32169 0.06899018395915846 MVIVEKWK 8 Unmodified _MVIVEKWK_ 0 0 0 REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|68|3|sense REV__L1MA4A_dup5439|chr15:94484460-94487217:+|1.2177401339509797|0.0073679689287404|7.37|150.0|68|3|sense MSMS UPN48_class_I_Rep_2 6 516.7376708984375 2 516.799163 1031.58377 NaN NaN NaN NaN NaN NaN NaN 32.319 1 35.969 35.469 36.469 3.6497 0 0 0 0.40738 1 4979 4979 0.79363 0.10326 1 + 27747 25327 17497 17507 32170 32170 0.06924465473252894 MVIWINRQ 8 Unmodified _MVIWINRQ_ 0 0 0 REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|134|1|anti-sense REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|134|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7347412109375 2 530.292037 1058.56952 NaN NaN NaN NaN NaN NaN NaN 26.955 1 30.586 30.086 31.086 3.6311 0 0 0 0.40738 1 3505 3505 0.79363 0 1 + 27748 27666 17498 17508 32171 32171 0.04257813044955583 MVKIIGSK 8 Unmodified _MVKIIGSK_ 0 0 0 ENSG00000162598|ENST00000371201|C1orf87 ENSG00000162598|ENST00000371201|C1orf87 ENSG00000162598|ENST00000371201|C1orf87 MSMS UPN48_class_I_Rep_1 5 438.2724609375 2 438.272781 874.531009 NaN NaN NaN NaN NaN NaN NaN 58.729 1 62.216 61.716 62.716 3.487 0 0 0 0.40604 1 12841 12841 2.5775 0 1 27749 3943 17499 17509 32172 32172 0.08872507410444541 MVKRKRTRPT 10 Unmodified _MVKRKRTRPT_ 0 0 0 ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS UPN47_class_I_Rep_1 2 636.887451171875 2 636.887698 1271.76084 0.57053 0.00036336 -0.20702 -0.00013185 0.3635 0.00023151 636.8872532716879 108.98 0.041298 112.58 112.55 112.59 3.6046 12 3 4 0 0 0 0.56486 1 26837 26837 0.40072 0 1 3855500 27750 1853 17500 17510 32173 32173 0.13583314076072384 MVLDIFFAF 9 Unmodified _MVLDIFFAF_ 0 0 0 REV__L1ME1_dup8337|chr4:105377558-105378373:-|1.1948549545656404|0.1211251075239477|3.3|151.0|45|2|anti-sense REV__L1ME1_dup8337|chr4:105377558-105378373:-|1.1948549545656404|0.1211251075239477|3.3|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_3 7 551.7882690429688 2 551.785721 1101.55689 NaN NaN NaN NaN NaN NaN NaN 35.525 1 39.195 38.695 39.695 3.6696 0 0 0 0.26661 1 5771 5771 12.532 2.4576 1 + 27751 27804 17501 17511 32174 32174 0.010173568620757578 MVLLMEPGAMR 11 Unmodified _MVLLMEPGAMR_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MSMS UPN46_class_I_Rep_3 1 624.3191528320312 2 624.319079 1246.62361 NaN NaN NaN NaN NaN NaN NaN 81.122 1 81.122 80.622 81.622 0 0 0 0 0.38417 1 19142 19142 1.3295 0.25807 1 27752 4830 17502 17512 32175 32175 0.010159010899997156 MVLLWHWV 8 Unmodified _MVLLWHWV_ 0 0 0 REV__MSTB2_dup1224|chr13:21082585-21083011:-|1.221136157292106|0.0006764332724855|10.82|139.0|16|1|anti-sense REV__MSTB2_dup1224|chr13:21082585-21083011:-|1.221136157292106|0.0006764332724855|10.82|139.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 542.3148193359375 2 542.294048 1082.57354 NaN NaN NaN NaN NaN NaN NaN 64.155 1 67.41 66.91 67.91 3.2556 0 0 0 0.40581 1 15264 15264 2.8892 0.58649 1 + 27753 31911 17503 17513 32176 32176 0.03555902538664668 MVPHTNAFVV 10 Unmodified _MVPHTNAFVV_ 0 0 0 REV__HERVS71-int_dup37|chr4:9603584-9606392:+|2.7724930615632304|0.1437713606102606|4.27|150.0|130|2|anti-sense REV__HERVS71-int_dup37|chr4:9603584-9606392:+|2.7724930615632304|0.1437713606102606|4.27|150.0|130|2|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7899169921875 2 557.789327 1113.5641 NaN NaN NaN NaN NaN NaN NaN 40.826 1 44.498 43.998 44.998 3.6719 0 0 0 0.53105 1 8137 8137 2.4985 0.19575 1 + 27754 23947 17504 17514 32177 32177 0.01186089462498785 MVPIHVITNP 10 Unmodified _MVPIHVITNP_ 0 0 0 REV__ENSG00000148408|ENST00000371372|CACNA1B REV__ENSG00000148408|ENST00000371372|CACNA1B MULTI-MSMS UPN48_class_I_Rep_1 5 561.3104858398438 2 560.812802 1119.61105 0.46129 0.0002587 -4.1866 -0.0023479 -3.7253 -0.0020892 561.3095358563685 51.15 0.16069 54.674 54.582 54.743 3.5246 10 9 2 0 0 0 0.56333 1 10537 10537 1.4819 0.28856 1 54765 + 27755 19589 17505 17515 32178 32178 0.056029490136324966 MVPIRTLL 8 Unmodified _MVPIRTLL_ 0 0 0 REV__MLT1C_dup6969|chr6:72781020-72781433:+|1.2283546600269408|0.002184019274184|9.14|147.0|20|1|anti-sense REV__MLT1C_dup6969|chr6:72781020-72781433:+|1.2283546600269408|0.002184019274184|9.14|147.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7952880859375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 87.657 1 91.045 90.545 91.545 3.3873 0 0 0 0.40581 1 21971 21971 2.8892 0.31174 1 + 27756 31655 17506 17516 32179 32179 0.10008482818830089 MVPLFLCA 8 Unmodified _MVPLFLCA_ 0 0 0 REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 447.76556396484375 2 447.23481 892.455067 0.1759 7.8669E-05 -0.62322 -0.00027872 -0.44732 -0.00020006 447.23445291424815 85.109 0.36931 85.109 84.89 85.26 0 50 37 2 0 0 0 0.72333 1 20302 20302 2.8892 0 1 431320 + 27757 32674 17507 17517 32180 32180 0.004537872386435993 MVPLFLCA 8 Unmodified _MVPLFLCA_ 0 0 0 REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 447.7653503417969 2 447.23481 892.455067 0.13876 6.2059E-05 -0.60134 -0.00026894 -0.46258 -0.00020688 447.23444628425113 81.432 0.4073 85.089 84.931 85.338 3.6567 83 49 2 0 0 0 0.72333 1 19324 19324 6.3541 3.4649 1 234870 + 27758 32674 17507 17517 32181 32181 0.004537872386435993 MVPLFLCA 8 Unmodified _MVPLFLCA_ 0 0 0 REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 447.23481 892.455067 -0.24228 -0.00010836 0.012947 5.7905E-06 -0.22933 -0.00010257 447.2346329582166 81.884 0.36913 85.208 85.024 85.393 3.3231 0.036649 0.00028822 NaN 6.3541 59 41 2 NaN NaN NaN NaN 0 NaN NaN 0 130540 + 27759 32674 17507 17517 0.004537872386435993 MVPLFLCA 8 Unmodified _MVPLFLCA_ 0 0 0 REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 447.23481 892.455067 0.017218 7.7003E-06 -0.054118 -2.4203E-05 -0.0369 -1.6503E-05 447.23455185318386 81.673 0.63198 85.248 84.93 85.562 3.5753 0.077348 0.00022824 NaN 6.3541 139 74 3 NaN NaN NaN NaN 0 NaN NaN 0 314950 + 27760 32674 17507 17517 0.004537872386435993 MVPLFLCA 8 Unmodified _MVPLFLCA_ 0 0 0 REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense REV__Tigger2_dup606|chr3:136427243-136428853:+|2.0997654561985426|0.0361986415188272|5.86|151.0|30|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 447.23481 892.455067 0.19265 8.6161E-05 -0.62284 -0.00027855 -0.43018 -0.00019239 447.23440336250616 81.516 0.45251 85.201 85.022 85.475 3.685 0.030212 -0.00028047 NaN 6.3541 81 55 2 NaN NaN NaN NaN 0 NaN NaN 0 231850 + 27761 32674 17507 17517 0.004537872386435993 MVQRQKLCY 9 Unmodified _MVQRQKLCY_ 0 0 0 L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|2|1|sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|2|1|sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 584.2897338867188 2 584.801911 1167.58927 0.54603 0.00031932 2.9818 0.0017437 3.5278 0.0020631 585.3047757611439 66.845 0.13458 70.353 70.251 70.386 3.5077 9 6 2 0 0 0 0.12444 1 15186 15186 2.0598 0 1 46817 27762 8579 17508 17518 32182 32182 0.012178209934063489 MVRKRQWR 8 Unmodified _MVRKRQWR_ 0 0 0 ENST00000534976.5_1_12:121783699-121783741:-|nuORF ENST00000534976.5_1_12:121783699-121783741:-|nuORF ENST00000534976.5_1_12:121783699-121783741:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 579.8322143554688 2 580.335101 1158.65565 -0.43968 -0.00025516 -0.63011 -0.00036567 -1.0698 -0.00062083 580.3346515628209 12.107 0.16146 15.482 15.396 15.557 3.3753 35 21 2 0 0 0 0.72333 1 28 28 0.69038 0.088878 1 49888 27763 7322 17509 17519 32183 32183 0.0826681767032369 MVSEASILLI 10 Unmodified _MVSEASILLI_ 0 0 0 REV__L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|54|1|anti-sense REV__L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|54|1|anti-sense MSMS UPN46_class_I_Rep_3 1 538.3095703125 2 538.307018 1074.59948 NaN NaN NaN NaN NaN NaN NaN 86.177 1 86.177 85.677 86.677 0 0 0 0 0.53105 1 20597 20597 6.7232 1.4925 1 + 27764 28485 17510 17520 32184 32184 0.06516707199648408 MVSFEAQTF 9 Unmodified _MVSFEAQTF_ 0 0 0 L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|84|1|anti-sense L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|84|1|anti-sense L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|84|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.2457275390625 2 530.244418 1058.47428 NaN NaN NaN NaN NaN NaN NaN 33.861 1 37.521 37.021 38.021 3.6607 0 0 0 0.38784 1 5391 5391 3.5965 0.70727 1 27765 10996 17511 17521 32185 32185 -0.052615849367384726 MVSSDLPKWP 10 Unmodified _MVSSDLPKWP_ 0 0 0 REV__ENST00000414584.1_1_2:87779745-87820741:+|nuORF REV__ENST00000414584.1_1_2:87779745-87820741:+|nuORF MSMS UPN47_class_I_Rep_3 4 580.2825317382812 2 580.294442 1158.57433 NaN NaN NaN NaN NaN NaN NaN 61.921 1 65.087 64.587 65.587 3.1667 0 0 0 0.53105 1 14643 14643 1.6526 0.32309 1 + 27766 22206 17512 17522 32186 32186 0.0013865239704955457 MVTWGWRF 8 Unmodified _MVTWGWRF_ 0 0 0 L1MB8_dup1335|chr2:39098899-39099568:+|2.1004006624811087|0.0137824210503893|7.25|151.0|26|3|sense L1MB8_dup1335|chr2:39098899-39099568:+|2.1004006624811087|0.0137824210503893|7.25|151.0|26|3|sense L1MB8_dup1335|chr2:39098899-39099568:+|2.1004006624811087|0.0137824210503893|7.25|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 541.78857421875 2 541.765655 1081.51676 NaN NaN NaN NaN NaN NaN NaN 18.264 1 18.264 17.764 18.764 0 0 0 0 0.40746 1 1572 1572 0.69038 0 1 27767 10937 17513 17523 32187 32187 -0.020741450178547893 MVVGMWLY 8 Unmodified _MVVGMWLY_ 0 0 0 L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|134|3|anti-sense;L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|97|2|anti-sense L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|134|3|anti-sense L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|134|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.74554443359375 2 499.745542 997.476531 NaN NaN NaN NaN NaN NaN NaN 83.215 1 83.215 82.715 83.715 0 0 0 0 0.4032 1 19754 19754 6.3541 0 1 27768 14132 17514 17524 32188 32188 -0.022308277326374082 MVVPDNRLR 9 Unmodified _MVVPDNRLR_ 0 0 0 REV__ENSG00000212126|ENST00000506868|TAS2R50 REV__ENSG00000212126|ENST00000506868|TAS2R50 MULTI-MSMS UPN47_class_I_Rep_1 2 550.305419921875 2 550.305675 1098.5968 0.53609 0.00029501 -0.59815 -0.00032916 -0.062058 -3.4151E-05 550.3050867373129 109.25 0.426 112.85 112.68 113.11 3.6046 109 47 4 0 0 0 0.48643 1 26926 26926 2.0598 0 1 9339700 + 27769 21236 17515 17525 32189 32189 0.05144296585331176 MVVPDNRLR 9 Unmodified _MVVPDNRLR_ 0 0 0 REV__ENSG00000212126|ENST00000506868|TAS2R50 REV__ENSG00000212126|ENST00000506868|TAS2R50 MULTI-MATCH UPN47_class_I_Rep_2 3 2 550.305675 1098.5968 0.62044 0.00034143 -1.144 -0.00062957 -0.5236 -0.00028814 550.3049476633458 109.12 0.057968 112.65 112.63 112.69 3.5307 -0.0642 -0.00050494 NaN 2.0598 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3406600 + 27770 21236 17515 17525 0.05144296585331176 MVVPDNRLR 9 Unmodified _MVVPDNRLR_ 0 0 0 REV__ENSG00000212126|ENST00000506868|TAS2R50 REV__ENSG00000212126|ENST00000506868|TAS2R50 MULTI-MATCH UPN47_class_I_Rep_3 4 2 550.305675 1098.5968 0.49777 0.00027393 -0.62751 -0.00034532 -0.12974 -7.1397E-05 550.3051769166622 109.1 0.071304 112.64 112.6 112.68 3.5347 -0.074233 6.3564E-05 NaN 2.0598 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2421400 + 27771 21236 17515 17525 0.05144296585331176 MVYFYPFI 8 Unmodified _MVYFYPFI_ 0 0 0 L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|27|2|anti-sense L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|27|2|anti-sense L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|27|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 540.290283203125 2 540.267164 1078.51978 0.34803 0.00018803 -2.3487 -0.001269 -2.0007 -0.0010809 540.2662930166791 49.036 0.53762 52.382 52.15 52.688 3.3465 50 38 2 0 0 0 0.72333 1 10704 10704 11.114 1.767 1 64776 27772 9185 17516 17526 32190 32190 -0.01634314683701632 MVYGRHPV 8 Unmodified _MVYGRHPV_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|233|2|anti-sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|233|2|anti-sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|233|2|anti-sense MSMS UPN46_class_I_Rep_3 1 479.7493896484375 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 111.17 1 111.17 110.67 111.67 0 0 0 0 0.40738 1 27397 27397 0.79363 0 1 27773 13764 17517 17527 32191 32191 0.005012819480612052 MVYKLAIN 8 Unmodified _MVYKLAIN_ 0 0 0 REV__L1MEd_dup20864|chr21:38411607-38412667:-|1.719508978981115|0.0412458872542553|5.38|149.0|28|2|sense REV__L1MEd_dup20864|chr21:38411607-38412667:-|1.719508978981115|0.0412458872542553|5.38|149.0|28|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.2699890136719 2 476.270238 950.525924 0.25345 0.00012071 -0.50709 -0.00024151 -0.25364 -0.0001208 476.2699840490642 65.829 0.85242 69.336 68.913 69.765 3.5077 81 58 2 0 0 0 0.82752 1 14908 14908 5.2307 0 1 317370 + 27774 28561 17518 17528 32192 32192 0.048682035478123 MVYMSKYK 8 Unmodified _MVYMSKYK_ 0 0 0 L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|10|2|sense L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|10|2|sense L1ME1_dup10515|chr5:138405540-138406063:+|1.9233273599109293|0.0361809504057799|5.73|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 525.2615966796875 2 525.261556 1048.50856 NaN NaN NaN NaN NaN NaN NaN 20.89 1 24.297 23.797 24.797 3.4074 0 0 0 0.40738 1 2247 2247 0.79363 0 1 27775 12164 17519 17529 32193 32193 -0.013754600494849 MVYVSRIV 8 Unmodified _MVYVSRIV_ 0 0 0 REV__L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|157|2|anti-sense REV__L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|157|2|anti-sense MSMS UPN47_class_I_Rep_2 3 484.22674560546875 2 483.775688 965.536823 NaN NaN NaN NaN NaN NaN NaN 29.046 1 32.538 32.038 33.038 3.4923 0 0 0 0.40738 1 4596 4596 0.79363 0 1 + 27776 28879 17520 17530 32194 32194 0.05267605922119856 MWCHRWTP 8 Unmodified _MWCHRWTP_ 0 0 0 REV__nc|ENSG00000167770|Q96FW1-2|OTUB1 REV__nc|ENSG00000167770|Q96FW1-2|OTUB1 MSMS UPN47_class_I_Rep_2 3 558.746826171875 2 558.746939 1115.47932 NaN NaN NaN NaN NaN NaN NaN 117.51 1 121 120.5 121.5 3.4891 0 0 0 0.40738 1 28725 28725 0.79363 0 1 + 27777 32051 17521 17531 32195 32195 -0.07379559555124615 MWCLCSRW 8 Unmodified _MWCLCSRW_ 0 0 0 L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|204|1|anti-sense;L1PA2_dup215|chr1:174377792-174383815:-|1.893230001147713|0.1765379000415642|3.42|151.0|202|1|anti-sense;L1HS_dup788|chr7:70197329-70203357:+|1.86074791699239|0.0201084658024881|6.53|151.0|322|3|anti-sense;L1HS_dup553|chr5:34147846-34154031:+|1.0296686266490696|0.0435786701224414|4.56|151.0|272|2|anti-sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|268|2|anti-sense;L1HS_dup376|chr4:15841547-15847572:+|1.8202285231742168|0.0469956216193236|5.28|151.0|253|2|anti-sense;L1HS_dup337|chr3:136479057-136485103:-|3.798017878111875|0.0957321270475341|5.31|151.0|204|1|anti-sense;L1HS_dup1462|chr16:54042097-54048145:+|2.416431049784204|0.4451227716780219|2.44|151.0|206|1|anti-sense;L1HS_dup1444|chr16:18821267-18827058:-|1.0693674233678694|0.2327118987400905|2.2|143.0|197|1|anti-sense;L1HS_dup1374|chr14:30684810-30690837:-|1.2268582469020992|0.1603142714844668|2.94|151.0|255|2|anti-sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|331|3|anti-sense;L1HS_dup191|chr2:148188746-148194773:+|2.1724550004371306|0.0498513486414125|5.45|151.0|199|1|anti-sense L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|204|1|anti-sense L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|204|1|anti-sense MSMS UPN47_class_I_Rep_2 3 542.7302856445312 2 542.7299 1083.44525 NaN NaN NaN NaN NaN NaN NaN 26.727 1 30.221 29.721 30.721 3.4945 0 0 0 0.40625 1 3909 3909 2.3027 0 1 27778 8474 17522 17532 32196 32196 -0.09313724038383953 MWCLVLIWFRC 11 Unmodified _MWCLVLIWFRC_ 0 0 0 REV__L1PB1_dup817|chr1:246285436-246286178:+|1.7673049604374944|0.0167821504129546|6.72|151.0|44|3|anti-sense REV__L1PB1_dup817|chr1:246285436-246286178:+|1.7673049604374944|0.0167821504129546|6.72|151.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 490.91546630859375 3 490.580001 1468.71817 0.19071 9.356E-05 1.5101 0.00074082 1.7008 0.00083438 490.9151132063511 37.886 0.34002 41.392 41.121 41.461 3.5052 47 33 2 0 0 0 0.68081 1 6458 6458 0.45452 0.45452 1 107200 + 27779 30342 17523 17533 32197 32197 0.0025645963198712707 MWCWPLVRW 9 Unmodified _MWCWPLVRW_ 0 0 0 REV__Tigger1_dup5796|chr7:102057201-102058280:+|2.333737617361072|0.0159568566124727|7.19|151.0|49|2|anti-sense REV__Tigger1_dup5796|chr7:102057201-102058280:+|2.333737617361072|0.0159568566124727|7.19|151.0|49|2|anti-sense MSMS UPN47_class_I_Rep_2 3 638.8093872070312 2 638.809539 1275.60453 NaN NaN NaN NaN NaN NaN NaN 45.215 1 48.569 48.069 49.069 3.3534 0 0 0 0.40038 1 9506 9506 0.6015 0 1 + 27780 32482 17524 17534 32198 32198 -0.022252674187484445 MWEEEEESH 9 Unmodified _MWEEEEESH_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MSMS UPN47_class_I_Rep_3 4 603.2269897460938 2 603.22441 1204.43427 NaN NaN NaN NaN NaN NaN NaN 114.59 1 118.07 117.57 118.57 3.4802 0 0 0 0.4007 1 28145 28145 0.52476 0.066424 1 + 27781 18003 17525 17535 32199 32199 -0.1597717639797338 MWEIRYFL 8 Unmodified _MWEIRYFL_ 0 0 0 REV__L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense REV__L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.7975463867188 2 579.294245 1156.57394 0.49128 0.00028459 0.0049458 2.8651E-06 0.49622 0.00028746 579.2937707657865 67.673 0.67076 71.169 70.785 71.456 3.4964 97 59 3 0 0 0 0.82752 2 15562 15562;15586 20.454 6.5476 1 284150 + 27782 28184 17526 17536 32200;32201 32200 0.0019127746786580246 MWEIRYFL 8 Unmodified _MWEIRYFL_ 0 0 0 REV__L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense REV__L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.2947387695312 2 579.294245 1156.57394 0.5391 0.0003123 0.1875 0.00010862 0.72661 0.00042092 579.2938346672746 67.491 0.80173 70.998 70.746 71.548 3.5077 141 74 3 0 0 0 0.82752 1 15434 15434 10.824 1.4408 1 177350 + 27783 28184 17526 17536 32202 32202 0.0019127746786580246 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_1 2 585.7523803710938 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 117.65 1 121.26 120.76 121.76 3.6036 0 0 0 0.39428 1 29173 29173 2.0598 0.57785 1 + 27784 28097 17527 17537 32203 32203 -0.21408792863439885 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_1 2 586.205078125 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 119.7 1 123.3 122.8 123.8 3.6036 0 0 0 0.39428 1 29753 29753 2.0598 0.40713 1 + 27785 28097 17527 17537 32204 32204 -0.21408792863439885 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 586.1890869140625 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 117.51 1 121 120.5 121.5 3.4891 0 0 0 0.40038 1 28723 28723 0.6015 0.20078 1 + 27786 28097 17527 17537 32205 32205 -0.21408792863439885 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 585.760009765625 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 30.2 1 33.511 33.011 34.011 3.3116 0 0 0 0.4007 1 4981 4981 0.52476 0.12405 1 + 27787 28097 17527 17537 32206 32206 -0.21408792863439885 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.1903686523438 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 119.8 1 123.22 122.72 123.72 3.4157 0 0 0 0.4007 1 29600 29600 0.52476 0.12405 1 + 27788 28097 17527 17537 32207 32207 -0.21408792863439885 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.2997436523438 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 21.124 1 24.772 24.272 25.272 3.648 0 0 0 0.40038 1 1942 1942 0.6015 0.20078 1 + 27789 28097 17527 17537 32208 32208 -0.21408792863439885 MWFCEYCSC 9 Unmodified _MWFCEYCSC_ 0 0 0 REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense REV__L1ME3C_dup2919|chr16:71740382-71740864:+|2.032777893888281|0.2484594960239932|3.03|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.1896362304688 2 586.189416 1170.36428 NaN NaN NaN NaN NaN NaN NaN 119.35 1 123.01 122.51 123.51 3.6652 0 0 0 0.40038 1 28641 28641 0.6015 0.14316 1 + 27790 28097 17527 17537 32209 32209 -0.21408792863439885 MWFCLWFC 8 Unmodified _MWFCLWFC_ 0 0 0 L1PA3_dup3804|chr5:140515515-140520942:+|9.638702187616172|0.2863007707611876|5.07|151.0|230|2|anti-sense;L1PA5_dup4157|chr5:177635732-177639675:-|5.341832411276024|0.084887734929306|5.98|151.0|191|3|anti-sense;L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|201|2|anti-sense L1PA3_dup3804|chr5:140515515-140520942:+|9.638702187616172|0.2863007707611876|5.07|151.0|230|2|anti-sense L1PA3_dup3804|chr5:140515515-140520942:+|9.638702187616172|0.2863007707611876|5.07|151.0|230|2|anti-sense MSMS UPN47_class_I_Rep_1 2 568.1978759765625 2 568.231744 1134.44894 NaN NaN NaN NaN NaN NaN NaN 116.47 1 120.08 119.58 120.58 3.6036 0 0 0 0.40738 1 28845 28845 0.79363 0.10326 1 27791 14259 17528 17538 32210 32210 -0.11291054264506784 MWFVEMES 8 Unmodified _MWFVEMES_ 0 0 0 Tigger1_dup9461|chr13:27081100-27082841:-|1.2769777512166407|0.0595312910154471|4.42|151.0|66|3|sense Tigger1_dup9461|chr13:27081100-27082841:-|1.2769777512166407|0.0595312910154471|4.42|151.0|66|3|sense Tigger1_dup9461|chr13:27081100-27082841:-|1.2769777512166407|0.0595312910154471|4.42|151.0|66|3|sense MSMS UPN47_class_I_Rep_2 3 529.7200317382812 2 529.719721 1057.42489 NaN NaN NaN NaN NaN NaN NaN 34.846 1 38.271 37.771 38.771 3.4253 0 0 0 0.40738 1 6351 6351 0.79363 0 1 27792 33213 17529 17539 32211 32211 -0.1015261621719219 MWITYITGML 10 Unmodified _MWITYITGML_ 0 0 0 REV__L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|23|1|sense REV__L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|23|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 614.8092041015625 2 614.80887 1227.60319 0.47205 0.00029022 -0.22644 -0.00013922 0.24561 0.000151 614.808655838919 32.227 0.76107 35.928 35.411 36.172 3.7015 114 82 2 0 0 0 0.56033 1 4778 4778 3.5965 0 1 97241 + 27793 30612 17530 17540 32212 32212 -0.0015094629816303495 MWIYRHLFM 9 Unmodified _MWIYRHLFM_ 0 0 0 L1ME1_dup481|chr1:44454661-44455126:-|6.106632979596124|0.0068907400181798|9.79|150.0|19|1|anti-sense L1ME1_dup481|chr1:44454661-44455126:-|6.106632979596124|0.0068907400181798|9.79|150.0|19|1|anti-sense L1ME1_dup481|chr1:44454661-44455126:-|6.106632979596124|0.0068907400181798|9.79|150.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 432.5975646972656 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 104.72 1 104.72 104.22 105.22 0 0 0 0 0.40038 1 25557 25557 0.26902 0.1097 1 27794 12411 17531 17541 32213 32213 -0.005249982472605552 MWIYYFTF 8 Unmodified _MWIYYFTF_ 0 0 0 L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|49|1|anti-sense L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|49|1|anti-sense L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7703857421875 2 585.770071 1169.52559 NaN NaN NaN NaN NaN NaN NaN 66.653 1 69.838 69.338 70.338 3.1853 0 0 0 0.40604 1 16089 16089 2.5775 0.51773 1 27795 11039 17532 17542 32214 32214 -0.052392161720263175 MWKKKKIY 8 Unmodified _MWKKKKIY_ 0 0 0 REV__ENSG00000238083.8,LRRC37A2,chr17,+,I4.1,46520284,46523083|40|6.94|1|intron REV__ENSG00000238083.8,LRRC37A2,chr17,+,I4.1,46520284,46523083|40|6.94|1|intron MSMS UPN47_class_I_Rep_3 4 562.8364868164062 2 562.83608 1123.65761 NaN NaN NaN NaN NaN NaN NaN 110.71 1 114.24 113.74 114.74 3.529 0 0 0 0.40738 1 27166 27166 0.79363 0 1 + 27796 21319 17533 17543 32215 32215 0.10072433635582456 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.2384643554688 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 26.066 1 29.829 29.329 30.329 3.7624 0 0 0 0.40746 1 3673 3673 0.69038 0 1 27797 13421 17534 17544 32216 32216 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.2377319335938 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 31.795 1 35.525 35.025 36.025 3.7293 0 0 0 0.40746 1 5385 5385 0.69038 0 1 27798 13421 17534 17544 32217 32217 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.2382202148438 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 33.092 1 36.791 36.291 37.291 3.6983 0 0 0 0.40746 1 5783 5783 0.69038 0 1 27799 13421 17534 17544 32218 32218 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2378540039062 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 17.777 1 21.164 20.664 21.664 3.387 0 0 0 0.40746 1 1389 1389 0.69038 0 1 27800 13421 17534 17544 32219 32219 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2383422851562 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 18.174 1 21.564 21.064 22.064 3.3898 0 0 0 0.40746 1 1491 1491 0.69038 0 1 27801 13421 17534 17544 32220 32220 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2384643554688 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 18.717 1 22.107 21.607 22.607 3.3898 0 0 0 0.40746 1 1630 1630 0.69038 0 1 27802 13421 17534 17544 32221 32221 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.23828125 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 26.473 1 29.967 29.467 30.467 3.4945 0 0 0 0.40746 1 3835 3835 0.69038 0 1 27803 13421 17534 17544 32222 32222 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2384643554688 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 34.111 1 37.551 37.051 38.051 3.4398 0 0 0 0.40746 1 6128 6128 0.69038 0 1 27804 13421 17534 17544 32223 32223 -0.05240319600625298 MWKTLSYC 8 Unmodified _MWKTLSYC_ 0 0 0 L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.238525390625 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 116.56 1 120.18 119.68 120.68 3.6254 0 0 0 0.40746 1 28388 28388 0.69038 0 1 27805 13421 17534 17544 32224 32224 -0.05240319600625298 MWKWRFCF 8 Unmodified _MWKWRFCF_ 0 0 0 Cheshire_dup876|chr15:61884489-61886709:-|1.049266990824102|0.0905169413471188|3.54|149.0|163|3|anti-sense Cheshire_dup876|chr15:61884489-61886709:-|1.049266990824102|0.0905169413471188|3.54|149.0|163|3|anti-sense Cheshire_dup876|chr15:61884489-61886709:-|1.049266990824102|0.0905169413471188|3.54|149.0|163|3|anti-sense MSMS UPN47_class_I_Rep_1 2 602.2811279296875 2 602.283157 1202.55176 NaN NaN NaN NaN NaN NaN NaN 78.71 1 82.156 81.656 82.656 3.4456 0 0 0 0.40746 1 19579 19579 0.69038 0.16561 1 27806 563 17535 17545 32225 32225 -0.041412254815440974 MWKYFVMPV 9 Unmodified _MWKYFVMPV_ 0 0 0 ENST00000357749.6_1_X:85218995-85233876:-|nuORF ENST00000357749.6_1_X:85218995-85233876:-|nuORF ENST00000357749.6_1_X:85218995-85233876:-|nuORF MSMS UPN48_class_I_Rep_3 7 600.8001708984375 2 600.800848 1199.58714 NaN NaN NaN NaN NaN NaN NaN 67.139 1 70.646 70.146 71.146 3.5077 0 0 0 0.40038 1 15304 15304 0.6015 0 1 27807 6294 17536 17546 32226 32226 -0.004666077444198891 MWLFCNRLW 9 Unmodified _MWLFCNRLW_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|13|1|sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 634.8076782226562 2 634.806996 1267.59944 NaN NaN NaN NaN NaN NaN NaN 37.629 1 40.871 40.371 41.371 3.2414 0 0 0 0.40038 1 7237 7237 0.6015 0 1 + 27808 32419 17537 17547 32227 32227 -0.023655712813706486 MWLHDKSTY 9 Unmodified _MWLHDKSTY_ 0 0 0 REV__L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|67|3|sense REV__L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|67|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 590.2733154296875 2 590.776416 1179.53828 0.60509 0.00035748 -2.7457 -0.0016221 -2.1407 -0.0012646 590.7732737498047 55.676 0.078568 59.232 59.17 59.248 3.5559 6 4 2 0 0 0 0.12462 1 11891 11891 1.8442 0.51471 1 61798 + 27809 27011 17538 17548 32228 32228 -0.04430804779781283 MWLQRRVF 8 Unmodified _MWLQRRVF_ 0 0 0 L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|18|2|sense L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|18|2|sense L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 568.3152465820312 2 568.313303 1134.61205 NaN NaN NaN NaN NaN NaN NaN 25.132 1 28.699 28.199 29.199 3.5667 0 0 0 0.40746 1 2881 2881 0.69038 0.16561 1 27810 11491 17539 17549 32229 32229 0.05013208173181738 MWMWAHQFP 9 Unmodified _MWMWAHQFP_ 0 0 0 ENST00000550533.1_1_12:51467850-51470340:-|nuORF ENST00000550533.1_1_12:51467850-51470340:-|nuORF ENST00000550533.1_1_12:51467850-51470340:-|nuORF MSMS UPN47_class_I_Rep_1 2 617.2699584960938 2 617.270247 1232.52594 NaN NaN NaN NaN NaN NaN NaN 32.612 1 36.325 35.825 36.825 3.7131 0 0 0 0.40038 1 5635 5635 0.6015 0 1 27811 7396 17540 17550 32230 32230 -0.08102119723844226 MWPIRPPMA 9 Unmodified _MWPIRPPMA_ 0 0 0 REV__ENST00000467906.5_1_6:43030793-43034124:+|nuORF REV__ENST00000467906.5_1_6:43030793-43034124:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 550.7904052734375 2 549.78299 1097.55143 0.2579 0.00014179 -0.32683 -0.00017969 -0.068936 -3.79E-05 549.7825519514275 49.428 1.546 53.087 52.597 54.143 3.6592 217 94 3 0 0 0 0.48643 1 10643 10643 2.0598 0.21551 1 820340 + 27812 22484 17541 17551 32231 32231 0.006553547986186459 MWRATTTV 8 Unmodified _MWRATTTV_ 0 0 0 ENSG00000168917|ENST00000446465|SLC35G2 ENSG00000168917|ENST00000446465|SLC35G2 ENSG00000168917|ENST00000446465|SLC35G2 MSMS UPN47_class_I_Rep_2 3 483.2452697753906 2 483.247295 964.480036 NaN NaN NaN NaN NaN NaN NaN 117.19 1 120.68 120.18 121.18 3.4891 0 0 0 0.40604 1 28629 28629 2.5775 0 1 27813 4394 17542 17552 32232 32232 -0.003624416344337078 MWRPRRGF 8 Unmodified _MWRPRRGF_ 0 0 0 REV__AluSz_dup96890|chr19:55235838-55236132:-|1.1136530093741477|0.1385927883171475|3.01|151.0|2|1|sense REV__AluSz_dup96890|chr19:55235838-55236132:-|1.1136530093741477|0.1385927883171475|3.01|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 553.2965087890625 2 553.295445 1104.57634 NaN NaN NaN NaN NaN NaN NaN 22.795 1 26.438 25.938 26.938 3.6432 0 0 0 0.40746 1 2384 2384 0.69038 0 1 + 27814 17221 17543 17553 32233 32233 0.028231707161921804 MWTELPCTN 9 Unmodified _MWTELPCTN_ 0 0 0 ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 MULTI-MSMS UPN47_class_I_Rep_1 2 547.7364501953125 2 547.735902 1093.45725 -0.060645 -3.3217E-05 0.38861 0.00021285 0.32796 0.00017964 547.7362343596284 20.016 0.77829 23.628 23.322 24.1 3.6118 170 84 3 0 0 0 0.48846 1 1880 1880 1.8442 0 1 72443 27815 2363 17544 17554 32234 32234 -0.08573828814178341 MWTSSFAY 8 Unmodified _MWTSSFAY_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|59|3|sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|59|3|sense MSMS UPN47_class_I_Rep_1 2 496.7120666503906 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 42.203 1 45.882 45.382 46.382 3.6792 0 0 0 0.40738 1 8555 8555 0.79363 0 1 + 27816 23750 17545 17555 32235 32235 -0.08509525653983019 MWVFPQVRT 9 Unmodified _MWVFPQVRT_ 0 0 0 L1MC4_dup21471|chr17:16774238-16774670:-|1.1629421245973062|0.4256002523535547|1.45|137.0|30|3|anti-sense L1MC4_dup21471|chr17:16774238-16774670:-|1.1629421245973062|0.4256002523535547|1.45|137.0|30|3|anti-sense L1MC4_dup21471|chr17:16774238-16774670:-|1.1629421245973062|0.4256002523535547|1.45|137.0|30|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3036499023438 2 582.305144 1162.59573 NaN NaN NaN NaN NaN NaN NaN 94.781 1 98.188 97.688 98.688 3.4068 0 0 0 0.40038 1 23581 23581 0.6015 0.076735 1 27817 11456 17546 17556 32236 32236 0.020940822164448036 MWWKKENR 8 Unmodified _MWWKKENR_ 0 0 0 ENST00000428675.5_1_2:198669918-198948555:+|nuORF ENST00000428675.5_1_2:198669918-198948555:+|nuORF ENST00000428675.5_1_2:198669918-198948555:+|nuORF MSMS UPN48_class_I_Rep_1 5 589.2993774414062 2 589.300393 1176.58623 NaN NaN NaN NaN NaN NaN NaN 36.313 1 39.824 39.324 40.324 3.5101 0 0 0 0.40738 1 6048 6048 0.79363 0.10326 1 27818 6714 17547 17557 32237 32237 0.005003139309110338 MWYGPGYPL 9 Unmodified _MWYGPGYPL_ 0 0 0 REV__ENSG00000178974|ENST00000313833|FBXO34 REV__ENSG00000178974|ENST00000313833|FBXO34 MULTI-SECPEP UPN48_class_I_Rep_1 5 542.776123046875 2 542.252046 1082.48954 0.4851 0.00026304 2.8176 0.0015279 3.3027 0.0017909 542.2533510104975 66.089 0.090553 69.541 69.501 69.591 3.4516 5 4 2 0 0 0 0.12422 1 15092 15092 2.3027 0 1 40349 + 27819 20666 17548 17558 32238 32238 -0.0484067334887186 MYAQRRIS 8 Unmodified _MYAQRRIS_ 0 0 0 ENST00000471105.5_1_1:201965436-201974841:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP ENST00000471105.5_1_1:201965436-201974841:+|nuORF ENST00000471105.5_1_1:201965436-201974841:+|nuORF MSMS UPN48_class_I_Rep_1 5 512.7734375 2 512.771468 1023.52838 NaN NaN NaN NaN NaN NaN NaN 49.283 1 52.808 52.308 53.308 3.5246 0 0 0 0.40604 1 9943 9943 2.5775 0.27475 1 27820 4757 17549 17559 32239 32239 0.017560520054985318 MYCEQQIC 8 Unmodified _MYCEQQIC_ 0 0 0 REV__MER31B_dup67|chr1:145192100-145192346:-|2.0798772612990284|0.0311348829690545|6.06|151.0|4|1|sense REV__MER31B_dup67|chr1:145192100-145192346:-|2.0798772612990284|0.0311348829690545|6.06|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 509.1954040527344 2 509.195556 1016.37656 NaN NaN NaN NaN NaN NaN NaN 99.512 1 103.31 102.81 103.81 3.7942 0 0 0 0.40604 1 24602 24602 2.5775 0 1 + 27821 31257 17550 17560 32240 32240 -0.1309743312875753 MYEMYSVSY 9 Unmodified _MYEMYSVSY_ 0 0 0 ENSG00000176194|ENST00000320477|CIDEA ENSG00000176194|ENST00000320477|CIDEA ENSG00000176194|ENST00000320477|CIDEA MSMS UPN47_class_I_Rep_2 3 586.735107421875 2 586.735568 1171.45658 NaN NaN NaN NaN NaN NaN NaN 66.057 1 69.316 68.816 69.816 3.2588 0 0 0 0.39518 1 15846 15846 1.8442 0 1 27822 4752 17551 17561 32241 32241 -0.12228668253897013 MYFFFCCLC 9 Unmodified _MYFFFCCLC_ 0 0 0 L1MB4_dup8268|chr19:18706507-18707695:-|1.024833063631432|0.0134644887730487|6.25|150.0|53|1|anti-sense L1MB4_dup8268|chr19:18706507-18707695:-|1.024833063631432|0.0134644887730487|6.25|150.0|53|1|anti-sense L1MB4_dup8268|chr19:18706507-18707695:-|1.024833063631432|0.0134644887730487|6.25|150.0|53|1|anti-sense MSMS UPN46_class_I_Rep_3 1 588.7240600585938 2 588.722895 1175.43124 NaN NaN NaN NaN NaN NaN NaN 18.539 1 18.539 18.039 19.039 0 0 0 0 0.40038 1 1636 1636 0.6015 0.076735 1 27823 10589 17552 17562 32242 32242 -0.14946137581659968 MYFFPVPD 8 Unmodified _MYFFPVPD_ 0 0 0 REV__L1PB1_dup10547|chr13:49046857-49049707:-|1.817580182799432|0.0332272061982531|5.77|151.0|143|2|anti-sense REV__L1PB1_dup10547|chr13:49046857-49049707:-|1.817580182799432|0.0332272061982531|5.77|151.0|143|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 507.84527587890625 2 508.233322 1014.45209 -0.6114 -0.00031073 -0.51587 -0.00026218 -1.1273 -0.00057292 508.2330985798622 14.152 0.32902 17.522 17.334 17.663 3.3697 51 38 2 0 0 0 0.72333 1 453 453 2.8892 0.31174 1 26485 + 27824 30296 17553 17563 32243 32243 -0.05455764614498548 MYFVTLHCS 9 Unmodified _MYFVTLHCS_ 0 0 0 REV__L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|44|3|anti-sense REV__L1M4a2_dup395|chr3:121953009-121953685:+|1.5298225386994284|0.0196992427509842|6.28|150.0|44|3|anti-sense MSMS UPN47_class_I_Rep_2 3 550.7507934570312 2 550.748813 1099.48307 NaN NaN NaN NaN NaN NaN NaN 30.901 1 34.383 33.883 34.883 3.4821 0 0 0 0.38478 1 5159 5159 4.3292 0.38484 1 + 27825 24516 17554 17564 32244 32244 -0.06268934571903628 MYFWFHTQI 9 Unmodified _MYFWFHTQI_ 0 0 0 REV__L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|109|1|anti-sense REV__L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|109|1|anti-sense MSMS UPN48_class_I_Rep_3 7 636.7987060546875 2 636.797152 1271.57975 NaN NaN NaN NaN NaN NaN NaN 55.551 1 59.107 58.607 59.607 3.5554 0 0 0 0.39518 1 11787 11787 1.8442 0.19162 1 + 27826 30738 17555 17565 32245 32245 -0.0451762402044551 MYGCMNLI 8 Unmodified _MYGCMNLI_ 0 0 0 REV__L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|6|1|sense REV__L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 472.7049865722656 2 472.705559 943.396566 NaN NaN NaN NaN NaN NaN NaN 90.957 1 94.583 94.083 95.083 3.626 0 0 0 0.40581 1 21857 21857 2.8892 0 1 + 27827 28756 17556 17566 32246 32246 -0.07739637398128707 MYICTKTY 8 Unmodified _MYICTKTY_ 0 0 0 REV__L1ME1_dup11144|chr6:13694079-13694560:+|1.0881241558366803|0.0094539428059095|6.85|151.0|15|3|sense REV__L1ME1_dup11144|chr6:13694079-13694560:+|1.0881241558366803|0.0094539428059095|6.85|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 511.72027587890625 2 511.737914 1021.46127 NaN NaN NaN NaN NaN NaN NaN 119.65 1 119.65 119.15 120.15 0 0 0 0 0.40738 1 29747 29747 0.79363 0 1 + 27828 27572 17557 17567 32247 32247 -0.04859739320488643 MYIFPVHW 8 Unmodified _MYIFPVHW_ 0 0 0 ENSG00000113140|ENST00000231061|SPARC ENSG00000113140|ENST00000231061|SPARC ENSG00000113140|ENST00000231061|SPARC MSMS UPN47_class_I_Rep_1 2 546.770751953125 2 546.770406 1091.52626 NaN NaN NaN NaN NaN NaN NaN 41.068 1 44.74 44.24 45.24 3.6719 0 0 0 0.40738 1 8208 8208 0.79363 0.10326 1 27829 2031 17558 17568 32248 32248 -0.015843767323303837 MYILLLVSPD 10 Unmodified _MYILLLVSPD_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 582.3253173828125 2 582.322668 1162.63078 NaN NaN NaN NaN NaN NaN NaN 64.818 1 68.174 67.674 68.674 3.3557 0 0 0 0.53105 1 15422 15422 6.7232 1.9672 1 27830 9197 17559 17569 32249 32249 0.0559728023374646 MYILLLVSPD 10 Unmodified _MYILLLVSPD_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 582.3240966796875 2 582.322668 1162.63078 NaN NaN NaN NaN NaN NaN NaN 64.95 1 68.306 67.806 68.806 3.3557 0 0 0 0.53105 1 15460 15460 10.074 0 1 27831 9197 17559 17569 32250 32250 0.0559728023374646 MYILLLVSPD 10 Unmodified _MYILLLVSPD_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3245849609375 2 582.322668 1162.63078 NaN NaN NaN NaN NaN NaN NaN 65.4 1 68.58 68.08 69.08 3.1795 0 0 0 0.53105 1 15704 15704 6.7232 0.51738 1 27832 9197 17559 17569 32251 32251 0.0559728023374646 MYILNHIR 8 Unmodified _MYILNHIR_ 0 0 0 L1MDa_dup1079|chr2:238085738-238086427:+|1.5127646656355436|0.1840190766406864|3.04|151.0|28|1|anti-sense L1MDa_dup1079|chr2:238085738-238086427:+|1.5127646656355436|0.1840190766406864|3.04|151.0|28|1|anti-sense L1MDa_dup1079|chr2:238085738-238086427:+|1.5127646656355436|0.1840190766406864|3.04|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_1 5 530.2914428710938 2 530.292037 1058.56952 NaN NaN NaN NaN NaN NaN NaN 27.216 1 30.779 30.279 31.279 3.5629 0 0 0 0.40738 1 3471 3471 0.79363 0 1 27833 12085 17560 17570 32252 32252 0.042578130449328455 MYISDYLVHD 10 Unmodified _MYISDYLVHD_ 0 0 0 REV__L1MB7_dup7536|chr6:37891021-37891345:-|1.1572891123823967|0.0028594467122102|8.66|150.0|4|1|sense REV__L1MB7_dup7536|chr6:37891021-37891345:-|1.1572891123823967|0.0028594467122102|8.66|150.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 628.286376953125 2 628.286814 1254.55907 NaN NaN NaN NaN NaN NaN NaN 48.784 1 52.466 51.966 52.966 3.6819 0 0 0 0.53105 1 10555 10555 3.5965 1.9439 1 + 27834 26307 17561 17571 32253 32253 -0.05802259190818404 MYIVMFKV 8 Unmodified _MYIVMFKV_ 0 0 0 REV__L1MC4_dup19713|chr14:102648379-102648807:-|1.6049831298591033|0.0027895034835207|9.17|151.0|4|2|sense REV__L1MC4_dup19713|chr14:102648379-102648807:-|1.6049831298591033|0.0027895034835207|9.17|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 515.73828125 2 515.776842 1029.53913 NaN NaN NaN NaN NaN NaN NaN 32.347 1 35.634 35.134 36.134 3.2867 0 0 0 0.40604 1 5632 5632 2.5775 0 1 + 27835 26853 17562 17572 32254 32254 0.02554318335546668 MYKAEEPAQV 10 Unmodified _MYKAEEPAQV_ 0 0 0 ENSG00000235007|ENST00000674648|unknown ENSG00000235007|ENST00000674648|unknown ENSG00000235007|ENST00000674648|unknown MSMS UPN46_class_I_Rep_3 1 583.282470703125 2 583.281531 1164.54851 NaN NaN NaN NaN NaN NaN NaN 42.322 1 42.322 41.822 42.822 0 0 0 0 0.53105 1 8369 8369 1.3295 0.36726 1 27836 5688 17563 17573 32255 32255 -0.027182418452412094 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.2650146484375 2 542.264622 1082.51469 0.0040614 2.2024E-06 -0.25336 -0.00013739 -0.2493 -0.00013519 542.2644170035309 39.861 1.1499 43.528 43.175 44.325 3.6668 191 84 3 0 0 0 0.82752 5 7750 7750;7752;7766;7962;8006 24.21 0 1 534420 27837 33369 17564 17574 32256;32257;32258;32259;32260 32256 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN47_class_I_Rep_1 2 542.2653198242188 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 41.01 1 44.682 44.182 45.182 3.6719 0 0 0 0.4032 1 8191 8191 6.3541 0 1 27838 33369 17564 17574 32261 32261 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.2636108398438 2 542.264622 1082.51469 0.0063536 3.4453E-06 -0.21181 -0.00011486 -0.20546 -0.00011141 542.2644446433346 40.239 0.92028 43.61 43.268 44.188 3.3712 171 63 4 0 0 0 0.82752 4 7889 7889;8085;8139;8154 24.21 0 1 533180 27839 33369 17564 17574 32262;32263;32264;32265 32262 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN47_class_I_Rep_2 3 542.265869140625 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 40.878 1 44.244 43.744 44.744 3.3655 0 0 0 0.34139 1 8185 8185 24.21 0 1 27840 33369 17564 17574 32266 32266 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN47_class_I_Rep_2 3 542.2651977539062 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 40.907 1 44.272 43.772 44.772 3.3655 0 0 0 0.37152 1 8194 8194 17.087 0 1 27841 33369 17564 17574 32267 32267 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN47_class_I_Rep_2 3 542.2642211914062 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 41.166 1 44.531 44.031 45.031 3.3655 0 0 0 0.37152 1 8269 8269 17.087 0 1 27842 33369 17564 17574 32268 32268 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.2647094726562 2 542.264622 1082.51469 -0.035657 -1.9336E-05 -0.22054 -0.00011959 -0.2562 -0.00013893 542.2644356143046 40.323 1.1747 43.561 43.244 44.419 3.2372 177 77 3 0 0 0 0.82752 7 7988 7988;8034;8214;8242;8251;8273;8287 24.21 0 1 444340 27843 33369 17564 17574 32269;32270;32271;32272;32273;32274;32275 32269 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.26416015625 2 542.264622 1082.51469 0.0062007 3.3624E-06 -0.22537 -0.00012221 -0.21917 -0.00011885 542.2645933812155 41.28 0.11851 44.518 44.419 44.538 3.2372 13 11 2 0 0 0 0.82752 1 8342 8342 6.3541 0 1 88433 27844 33369 17564 17574 32276 32276 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN48_class_I_Rep_1 5 542.2642211914062 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 40.496 1 44 43.5 44.5 3.5048 0 0 0 0.37152 1 7274 7274 17.087 0 1 27845 33369 17564 17574 32277 32277 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN48_class_I_Rep_2 6 542.264404296875 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 40.267 1 44.009 43.509 44.509 3.7413 0 0 0 0.39167 1 7233 7233 11.114 0 1 27846 33369 17564 17574 32278 32278 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 542.26416015625 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 40.129 1 43.78 43.28 44.28 3.6509 0 0 0 0.39167 1 7100 7100 11.114 0 1 27847 33369 17564 17574 32279 32279 -0.023266185463171496 MYLLYYAF 8 Unmodified _MYLLYYAF_ 0 0 0 Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense;Tigger3b_dup1843|chr4:155674499-155675118:-|1.5321427213523886|0.0844758198486334|4.18|143.0|15|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 542.264892578125 2 542.264622 1082.51469 NaN NaN NaN NaN NaN NaN NaN 40.29 1 43.941 43.441 44.441 3.6509 0 0 0 0.39167 1 7146 7146 11.114 0 1 27848 33369 17564 17574 32280 32280 -0.023266185463171496 MYLRDHHH 8 Unmodified _MYLRDHHH_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS UPN47_class_I_Rep_1 2 554.6862182617188 2 554.758892 1107.50323 NaN NaN NaN NaN NaN NaN NaN 30.978 1 34.708 34.208 35.208 3.7293 0 0 0 0.40643 1 5135 5135 2.0598 0.73022 1 27849 4791 17565 17575 32281 32281 -0.046220027970775845 MYLVNNMF 8 Unmodified _MYLVNNMF_ 0 0 0 LTR5B_dup232|chr10:79744593-79745590:+|1.2435940580295612|0.037723124705404|5.04|139.0|11|2|sense LTR5B_dup232|chr10:79744593-79745590:+|1.2435940580295612|0.037723124705404|5.04|139.0|11|2|sense LTR5B_dup232|chr10:79744593-79745590:+|1.2435940580295612|0.037723124705404|5.04|139.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 516.23876953125 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 119.51 1 122.99 122.49 123.49 3.4793 0 0 0 0.40738 1 29277 29277 0.79363 0 1 27850 15685 17566 17576 32282 32282 -0.05240319600648036 MYMYHIFLI 9 Unmodified _MYMYHIFLI_ 0 0 0 L1PA5_dup10302|chr17:2652757-2653430:+|2.2803025640277235|0.0499441293398331|5.51|151.0|27|1|anti-sense L1PA5_dup10302|chr17:2652757-2653430:+|2.2803025640277235|0.0499441293398331|5.51|151.0|27|1|anti-sense L1PA5_dup10302|chr17:2652757-2653430:+|2.2803025640277235|0.0499441293398331|5.51|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_1 2 615.7587280273438 2 615.806131 1229.59771 NaN NaN NaN NaN NaN NaN NaN 53.466 1 56.993 56.493 57.493 3.5278 0 0 0 0.39326 1 11981 11981 2.3027 0.24298 1 27851 14417 17567 17577 32283 32283 -0.00790625089985042 MYMYVDILE 9 Unmodified _MYMYVDILE_ 0 0 0 REV__L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|75|1|anti-sense REV__L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|75|1|anti-sense MSMS UPN47_class_I_Rep_2 3 588.771484375 2 588.769411 1175.52427 NaN NaN NaN NaN NaN NaN NaN 29.827 1 33.319 32.819 33.819 3.4923 0 0 0 0.39428 1 4831 4831 2.0598 0.21551 1 + 27852 27118 17568 17578 32284 32284 -0.05647218323110792 MYNANYNHS 9 Unmodified _MYNANYNHS_ 0 0 0 REV__HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|11|1|sense REV__HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 557.2273559570312 2 557.224548 1112.43454 NaN NaN NaN NaN NaN NaN NaN 83.451 1 87.179 86.679 87.679 3.7281 0 0 0 0.3967 1 19782 19782 1.4819 0.68827 1 + 27853 23850 17569 17579 32285 32285 -0.11717711887467885 MYNAPSLEW 9 Unmodified _MYNAPSLEW_ 0 0 0 REV__ENSG00000198774|ENST00000361228|RASSF9 REV__ENSG00000198774|ENST00000361228|RASSF9 MSMS UPN47_class_I_Rep_3 4 555.7697143554688 2 555.749867 1109.48518 NaN NaN NaN NaN NaN NaN NaN 48.17 1 51.41 50.91 51.91 3.2405 0 0 0 0.37692 1 10449 10449 6.2058 0.44535 1 + 27854 21147 17570 17580 32286 32286 -0.06518182562490438 MYNEHMVSY 9 Unmodified _MYNEHMVSY_ 0 0 0 REV__MER58B_dup6272|chr19:6095748-6096087:+|1.1594318395931256|0.01901539644583|5.93|150.0|13|3|sense REV__MER58B_dup6272|chr19:6095748-6096087:+|1.1594318395931256|0.01901539644583|5.93|150.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 587.2403564453125 2 587.238809 1172.46307 NaN NaN NaN NaN NaN NaN NaN 65.907 1 69.264 68.764 69.764 3.3576 0 0 0 0.38478 1 15752 15752 4.3292 0.73274 1 + 27855 31470 17571 17581 32287 32287 -0.11626730302532451 MYSASCAPHG 10 Unmodified _MYSASCAPHG_ 0 0 0 REV__ENST00000357066.7_1_19:2072916-2073039:-|nuORF REV__ENST00000357066.7_1_19:2072916-2073039:-|nuORF MSMS UPN47_class_I_Rep_2 3 512.2048950195312 2 512.20477 1022.39499 NaN NaN NaN NaN NaN NaN NaN 100.04 1 103.54 103.04 104.04 3.4974 0 0 0 0.53105 1 24477 24477 3.5965 1.019 1 + 27856 21875 17572 17582 32288 32288 -0.1153155516252582 MYSRTCSL 8 Unmodified _MYSRTCSL_ 0 0 0 REV__L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|14|2|sense REV__L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|14|2|sense MSMS UPN48_class_I_Rep_2 6 480.7167663574219 2 480.717513 959.420473 NaN NaN NaN NaN NaN NaN NaN 118.33 1 121.99 121.49 122.49 3.6627 0 0 0 0.40738 1 28370 28370 0.79363 0 1 + 27857 28118 17573 17583 32289 32289 -0.06086080640113778 MYTLDDLIQ 9 Unmodified _MYTLDDLIQ_ 0 0 0 REV__L1MB3_dup8863|chr9:131402273-131402546:-|1.9857894942517769|0.0106719997158259|7.54|151.0|9|3|sense REV__L1MB3_dup8863|chr9:131402273-131402546:-|1.9857894942517769|0.0106719997158259|7.54|151.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 556.288330078125 2 556.270632 1110.52671 NaN NaN NaN NaN NaN NaN NaN 58.768 1 62.186 61.686 62.686 3.4171 0 0 0 0.31276 1 13596 13596 10.074 0 1 + 27858 25927 17574 17584 32290 32290 -0.024130465938014822 MYVIFKIL 8 Unmodified _MYVIFKIL_ 0 0 0 Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|75|1|anti-sense Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|75|1|anti-sense Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|75|1|anti-sense MSMS UPN47_class_I_Rep_2 3 513.8070068359375 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 18.519 1 21.909 21.409 22.409 3.3898 0 0 0 0.40746 1 1580 1580 0.69038 0 1 27859 33056 17575 17585 32291 32291 0.08658537621408868 MYVPNSSAME 10 Unmodified _MYVPNSSAME_ 0 0 0 REV__ENST00000352460.7_1_11:18303495-18317646:-|nuORF REV__ENST00000352460.7_1_11:18303495-18317646:-|nuORF MSMS UPN47_class_I_Rep_1 2 564.7618408203125 2 564.738642 1127.46273 NaN NaN NaN NaN NaN NaN NaN 43.386 1 47.074 46.574 47.574 3.6875 0 0 0 0.53105 1 8916 8916 1.6526 0.85899 1 + 27860 18437 17576 17586 32292 32292 -0.09590150022381749 MYWMFIYIIY 10 Unmodified _MYWMFIYIIY_ 0 0 0 REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|139|3|anti-sense REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|139|3|anti-sense MSMS UPN48_class_I_Rep_1 5 481.5679931640625 3 481.567756 1441.68144 NaN NaN NaN NaN NaN NaN NaN 55.548 1 59.056 58.556 59.556 3.5082 0 0 0 0.53105 1 11867 11867 0.15932 0 1 + 27861 25190 17577 17587 32293 32293 -0.02173513712887143 MYYFGIAALD 10 Unmodified _MYYFGIAALD_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS UPN48_class_I_Rep_3 7 582.2772827148438 2 582.275718 1162.53688 NaN NaN NaN NaN NaN NaN NaN 48.418 1 52.052 51.552 52.552 3.6339 0 0 0 0.53105 1 9610 9610 6.2058 0 1 27862 2493 17578 17588 32294 32294 -0.037884388685597514 MYYQKSHCI 9 Unmodified _MYYQKSHCI_ 0 0 0 L1MA9_dup30|chr1:35988152-35988880:-|3.1520981941629445|0.3705528617990075|3.09|151.0|17|2|sense L1MA9_dup30|chr1:35988152-35988880:-|3.1520981941629445|0.3705528617990075|3.09|151.0|17|2|sense L1MA9_dup30|chr1:35988152-35988880:-|3.1520981941629445|0.3705528617990075|3.09|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 586.7639770507812 2 586.764994 1171.51544 NaN NaN NaN NaN NaN NaN NaN 20.685 1 24.328 23.828 24.828 3.6436 0 0 0 0.39428 1 2121 2121 2.0598 0 1 27863 10134 17579 17589 32295 32295 -0.06346147168915195 MYYYWHPF 8 Unmodified _MYYYWHPF_ 0 0 0 L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|51|2|anti-sense L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|51|2|anti-sense L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|51|2|anti-sense MSMS UPN48_class_I_Rep_2 6 603.756103515625 2 603.757495 1205.50044 NaN NaN NaN NaN NaN NaN NaN 113.83 1 117.5 117 118 3.663 0 0 0 0.40738 1 27184 27184 0.79363 0.19213 1 27864 12196 17580 17590 32296 32296 -0.0940927097462918 NACCFCWCCCC 11 Unmodified _NACCFCWCCCC_ 0 0 0 nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 nc|ENSG00000147509|O76081-5|RGS20 nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN46_class_I_Rep_3 1 629.6581420898438 2 629.658589 1257.30262 NaN NaN NaN NaN NaN NaN NaN 118.46 1 118.46 117.96 118.96 0 0 0 0 0.38417 1 29407 29407 0 0 1 27865 3479 17581 17591 32297 32297 -0.31573507150233127 NACCFCWCCCC 11 Unmodified _NACCFCWCCCC_ 0 0 0 nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 nc|ENSG00000147509|O76081-5|RGS20 nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN47_class_I_Rep_1 2 629.7601318359375 2 629.658589 1257.30262 NaN NaN NaN NaN NaN NaN NaN 118.97 1 122.58 122.08 123.08 3.6036 0 0 0 0.38417 1 29545 29545 0 0 1 27866 3479 17581 17591 32298 32298 -0.31573507150233127 NACCFCWCCCC 11 Unmodified _NACCFCWCCCC_ 0 0 0 nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 nc|ENSG00000147509|O76081-5|RGS20 nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN47_class_I_Rep_1 2 629.6860961914062 2 629.658589 1257.30262 NaN NaN NaN NaN NaN NaN NaN 119.38 1 122.98 122.48 123.48 3.6036 0 0 0 0.38417 1 29661 29661 0 0 1 27867 3479 17581 17591 32299 32299 -0.31573507150233127 NACCFCWCCCC 11 Unmodified _NACCFCWCCCC_ 0 0 0 nc|ENSG00000147509|O76081-5|RGS20;nc|ENSG00000147509|O76081-6|RGS20;nc|ENSG00000147509|O76081-2|RGS20;ENSG00000147509|ENST00000297313|RGS20 nc|ENSG00000147509|O76081-5|RGS20 nc|ENSG00000147509|O76081-5|RGS20 MSMS UPN47_class_I_Rep_2 3 629.6572875976562 2 629.658589 1257.30262 NaN NaN NaN NaN NaN NaN NaN 27.293 1 30.791 30.291 31.291 3.4986 0 0 0 0.38417 1 4075 4075 0 0 1 27868 3479 17581 17591 32300 32300 -0.31573507150233127 NACRDFLML 9 Unmodified _NACRDFLML_ 0 0 0 ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS UPN47_class_I_Rep_3 4 541.75927734375 2 541.759712 1081.50487 -0.1484 -8.0398E-05 -0.34397 -0.00018635 -0.49237 -0.00026675 541.7594020473396 33.588 0.63019 36.862 36.603 37.234 3.2748 76 45 2 0 0 0 0.49026 1 6118 6118 1.6526 0 1 145040 27869 1923 17582 17592 32301 32301 -0.032621298233607376 NACYEFDWD 9 Unmodified _NACYEFDWD_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|86|2|anti-sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|86|2|anti-sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|86|2|anti-sense MSMS UPN46_class_I_Rep_3 1 581.7094116210938 2 581.710939 1161.40732 NaN NaN NaN NaN NaN NaN NaN 116.05 1 116.05 115.55 116.55 0 0 0 0 0.39518 1 28715 28715 1.8442 0.19162 1 27870 12480 17583 17593 32302 32302 -0.16692240218503684 NADEARSL 8 Unmodified _NADEARSL_ 0 0 0 ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX ENST00000464196.5_1_Y:22749894-22750047:+|nuORF ENST00000464196.5_1_Y:22749894-22750047:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 438.214111328125 2 438.214506 874.414459 -0.71608 -0.0003138 0.32624 0.00014296 -0.38984 -0.00017083 438.21450363951004 18.038 0.79201 21.425 21.096 21.888 3.387 129 89 3 0 0 0 0.82752 1 1445 1445 16.149 3.1066 1 60271 27871 4643 17584 17594 32303 32303 -0.027771395557579126 NADEAVTR 8 Unmodified _NADEAVTR_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS UPN47_class_I_Rep_1 2 438.2142028808594 2 438.214506 874.414459 -0.45731 -0.0002004 0.11786 5.1647E-05 -0.33945 -0.00014875 438.214400050156 17.623 0.90389 21.173 20.907 21.811 3.5504 147 109 3 0 0 0 0.82752 3 1403 1338;1367;1403 13.042 0 1 63352 27872 4480 17585 17595 32304;32305;32306 32306 -0.02777139555746544 NADEAVTR 8 Unmodified _NADEAVTR_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS UPN47_class_I_Rep_2 3 438.2143249511719 2 438.214506 874.414459 -0.71608 -0.0003138 0.32624 0.00014296 -0.38984 -0.00017083 438.21450363951004 18.038 0.79201 21.425 21.096 21.888 3.387 129 89 3 0 0 0 0.82752 1 1477 1477 18.146 0 1 60271 27873 4480 17585 17595 32307 32307 -0.02777139555746544 NADIGLRLK 9 Unmodified _NADIGLRLK_ 0 0 0 nc|ENSG00000174840|Q6L8Q7-2|PDE12;ENSG00000174840|ENST00000311180|PDE12 nc|ENSG00000174840|Q6L8Q7-2|PDE12 nc|ENSG00000174840|Q6L8Q7-2|PDE12 MULTI-MSMS UPN47_class_I_Rep_1 2 500.30078125 2 500.300916 998.587279 -0.24342 -0.00012178 0.18344 9.1773E-05 -0.059988 -3.0012E-05 500.3008978488086 35.788 0.63663 39.464 39.141 39.777 3.6762 97 42 3 0 0 0 0.43982 1 6660 6660 5.7319 0 1 217710 27874 4692 17586 17596 32308 32308 0.08792851571467963 NADIGLRLK 9 Unmodified _NADIGLRLK_ 0 0 0 nc|ENSG00000174840|Q6L8Q7-2|PDE12;ENSG00000174840|ENST00000311180|PDE12 nc|ENSG00000174840|Q6L8Q7-2|PDE12 nc|ENSG00000174840|Q6L8Q7-2|PDE12 MULTI-MSMS UPN47_class_I_Rep_2 3 500.3000183105469 2 500.300916 998.587279 -0.18016 -9.0136E-05 0.2688 0.00013448 0.088636 4.4345E-05 500.3009144520707 36.075 0.71771 39.486 39.196 39.914 3.4114 118 52 3 0 0 0 0.47197 1 6800 6800 3.5965 0 1 180630 27875 4692 17586 17596 32309 32309 0.08792851571467963 NADLRKLAV 9 Unmodified _NADLRKLAV_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000478631.6_2_1:53460811-53461279:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_1 2 500.30084228515625 2 500.300916 998.587279 -0.24342 -0.00012178 0.18344 9.1773E-05 -0.059988 -3.0012E-05 500.3008978488086 35.788 0.63663 39.464 39.141 39.777 3.6762 97 42 3 0 0 0 0.048662 2 6618 6579;6618 49.554 21.925 1 217710 27876 5222;5291;5787;6661 17587 17597 32310;32311 32311 0.08792851571456595 NADLRKLAV 9 Unmodified _NADLRKLAV_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000478631.6_2_1:53460811-53461279:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_2 3 500.301025390625 2 500.300916 998.587279 -0.18016 -9.0136E-05 0.2688 0.00013448 0.088636 4.4345E-05 500.3009144520707 36.075 0.71771 39.486 39.196 39.914 3.4114 118 52 3 0 0 0 0.21527 3 6755 6679;6715;6755 19.257 3.7538 1 180630 27877 5222;5291;5787;6661 17587 17597 32312;32313;32314 32314 0.08792851571456595 NADLRKLAV 9 Unmodified _NADLRKLAV_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000478631.6_2_1:53460811-53461279:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_3 4 500.3009033203125 2 500.300916 998.587279 -0.30131 -0.00015075 0.25979 0.00012997 -0.041523 -2.0774E-05 500.3009858253598 36.269 0.8906 39.524 39.184 40.074 3.2547 118 58 3 0 0 0 0.12096 4 6796 6757;6796;6846;6885 29.841 12.898 1 195770 27878 5222;5291;5787;6661 17587 17597 32315;32316;32317;32318 32316 0.08792851571456595 NADLVLGKL 9 Unmodified _NADLVLGKL_ 0 0 0 Ricksha_c_dup1165|chr22:42248610-42249974:+|1.327221413451206|0.0132170824472374|6.65|151.0|42|3|sense Ricksha_c_dup1165|chr22:42248610-42249974:+|1.327221413451206|0.0132170824472374|6.65|151.0|42|3|sense Ricksha_c_dup1165|chr22:42248610-42249974:+|1.327221413451206|0.0132170824472374|6.65|151.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 471.79571533203125 2 471.784567 941.554582 -0.015093 -7.1208E-06 0.27201 0.00012833 0.25692 0.00012121 471.7847589763007 50.777 0.37624 54.405 54.233 54.609 3.6285 22 16 2 0 0 0 0.38714 1 11172 11172 8.7454 0 1 48101 27879 32830 17588 17598 32319 32319 0.08146644448629559 NADQPLRV 8 Unmodified _NADQPLRV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN47_class_I_Rep_1 2 456.7485046386719 2 456.748516 911.482479 NaN NaN NaN NaN NaN NaN NaN 30.436 1 34.181 33.681 34.681 3.7449 0 0 0 0.40292 1 4977 4977 6.7232 0.51738 1 27880 5036 17589 17599 32320 32320 0.023197300949163946 NADQPLRV 8 Unmodified _NADQPLRV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN47_class_I_Rep_2 3 456.74859619140625 2 456.748516 911.482479 NaN NaN NaN NaN NaN NaN NaN 30.766 1 34.248 33.748 34.748 3.4821 0 0 0 0.40643 1 5117 5117 2.0598 0 1 27881 5036 17589 17599 32321 32321 0.023197300949163946 NADQPLRV 8 Unmodified _NADQPLRV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN47_class_I_Rep_3 4 456.7485046386719 2 456.748516 911.482479 NaN NaN NaN NaN NaN NaN NaN 30.789 1 34.1 33.6 34.6 3.3116 0 0 0 0.40472 1 5161 5161 4.3292 0.73274 1 27882 5036 17589 17599 32322 32322 0.023197300949163946 NADQPLRV 8 Unmodified _NADQPLRV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN47_class_I_Rep_3 4 456.7490234375 2 456.748516 911.482479 NaN NaN NaN NaN NaN NaN NaN 30.934 1 34.246 33.746 34.746 3.3116 0 0 0 0.39242 1 5206 5206 10.824 0.75 1 27883 5036 17589 17599 32323 32323 0.023197300949163946 NAFGNAFLNR 10 Unmodified _NAFGNAFLNR_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000013016|ENST00000322054|EHD3 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS UPN48_class_I_Rep_1 5 562.2860717773438 2 562.285797 1122.55704 0.44298 0.00024908 -0.57943 -0.0003258 -0.13645 -7.6724E-05 562.2856500161176 49.773 0.45141 53.297 53.12 53.572 3.5246 40 27 2 0 0 0 0.52562 1 10085 10085 8.7454 3.9894 1 81417 27884 1922 17590 17600 32324 32324 0.0006649290628502058 NAFGNAFLNR 10 Unmodified _NAFGNAFLNR_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000013016|ENST00000322054|EHD3 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS UPN48_class_I_Rep_2 6 562.28564453125 2 562.285797 1122.55704 0.4394 0.00024707 -0.5669 -0.00031876 -0.12751 -7.1695E-05 562.2857135421751 49.687 0.33892 53.382 53.146 53.484 3.6946 34 20 2 0 0 0 0.4965 1 10067 10067 12.241 3.6474 1 83040 27885 1922 17590 17600 32325 32325 0.0006649290628502058 NAFGNAFLNR 10 Unmodified _NAFGNAFLNR_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000013016|ENST00000322054|EHD3 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS UPN48_class_I_Rep_3 7 562.2867431640625 2 562.285797 1122.55704 0.32471 0.00018258 0.13485 7.5822E-05 0.45956 0.0002584 562.2857727205923 49.888 0.33345 53.509 53.239 53.573 3.621 26 20 2 0 0 0 0.54822 1 10027 10027 5.7319 0.97584 1 88036 27886 1922 17590 17600 32326 32326 0.0006649290628502058 NAGWGRKL 8 Unmodified _NAGWGRKL_ 0 0 0 ENST00000339365.2_1_10:75504155-75506467:+|nuORF ENST00000339365.2_1_10:75504155-75506467:+|nuORF ENST00000339365.2_1_10:75504155-75506467:+|nuORF MSMS UPN47_class_I_Rep_2 3 451.2528076171875 2 451.253769 900.492984 NaN NaN NaN NaN NaN NaN NaN 43.421 1 46.779 46.279 47.279 3.358 0 0 0 0.40625 1 8955 8955 2.3027 0 1 27887 6222 17591 17601 32327 32327 0.03875757539992719 NAHMVPEDGSL 11 Unmodified _NAHMVPEDGSL_ 0 0 0 nc|ENSG00000133488|Q9UDX3-2|SEC14L4;ENST00000320982.3_1_22:30886116-30899718:-|nuORF;ENST00000321205.9_1_22:30886096-30899699:-|nuORF;ENSG00000133488|ENST00000255858|SEC14L4 nc|ENSG00000133488|Q9UDX3-2|SEC14L4 nc|ENSG00000133488|Q9UDX3-2|SEC14L4 MULTI-MSMS UPN47_class_I_Rep_1 2 585.7714233398438 2 585.266413 1168.51827 0.35114 0.00020551 2.3966 0.0014026 2.7477 0.0016082 585.770618209458 55.845 0.40689 59.324 59.09 59.497 3.4785 38 24 3 0 0 0 0.50573 1 12715 12715 7.609 0.31972 1 111420 27888 2806 17592 17602 32328 32328 -0.059246005103887 NAHWKRIK 8 Unmodified _NAHWKRIK_ 0 0 0 REV__L1MB8_dup2654|chr3:32446994-32447923:-|2.151114745157436|0.2368363258207606|3.18|151.0|13|2|sense REV__L1MB8_dup2654|chr3:32446994-32447923:-|2.151114745157436|0.2368363258207606|3.18|151.0|13|2|sense MSMS UPN47_class_I_Rep_1 2 526.8082275390625 2 526.809242 1051.60393 NaN NaN NaN NaN NaN NaN NaN 29.307 1 33.065 32.565 33.565 3.7578 0 0 0 0.40746 1 4637 4637 0.69038 0 1 + 27889 26401 17593 17603 32329 32329 0.08019397248085625 NAIQLLLELRE 11 Unmodified _NAIQLLLELRE_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP UPN48_class_I_Rep_1 5 437.5916748046875 3 437.925877 1310.7558 -0.037664 -1.6494E-05 0.52189 0.00022855 0.48423 0.00021206 438.26033046324386 89.843 0.084793 93.468 93.413 93.498 3.6255 10 9 2 0 0 0 22.551 1 21577 21577 0.45452 0 1 70568 + 27890 18881 17594 17604 32330 32330 0.11285288694466544 NAKALVVE 8 Unmodified _NAKALVVE_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 422.2491760253906 2 422.25036 842.486168 0.1041 4.3958E-05 1.5587 0.00065817 1.6628 0.00070213 422.25089335269587 107.92 0.29621 107.92 107.86 108.15 0 48 20 4 0 0 0 0.82752 2 26387 26316;26387 5.2307 0 1 111160000 + 27891 20773 17595 17605 32331;32332 32332 0.05862399868772172 NAKALVVE 8 Unmodified _NAKALVVE_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 422.2509765625 2 422.25036 842.486168 -0.11698 -4.9396E-05 2.095 0.0008846 1.978 0.00083521 422.2511576186252 110.36 0.18327 113.99 113.93 114.11 3.6326 30 19 2 0 0 0 0.82752 1 26794 26794 2.5775 0 1 1935000 + 27892 20773 17595 17605 32333 32333 0.05862399868772172 NAKALVVE 8 Unmodified _NAKALVVE_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MULTI-MATCH UPN46_class_I_Rep_3 1 2 422.25036 842.486168 0.10392 4.3879E-05 1.6436 0.00069401 1.7475 0.00073789 422.25097643418115 113.73 0.05027 113.73 113.72 113.77 0 -0.12282 -0.00050249 NaN 2.5775 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 198590 + 27893 20773 17595 17605 0.05862399868772172 NAKALVVE 8 Unmodified _NAKALVVE_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_2 3 2 422.25036 842.486168 -0.34538 -0.00014584 2.4767 0.0010458 2.1313 0.00089996 422.25133002563354 110.58 0.12755 114.11 114.06 114.19 3.5271 0.25851 0.00020109 NaN 2.5775 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 70920 + 27894 20773 17595 17605 0.05862399868772172 NAKALVVE 8 Unmodified _NAKALVVE_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_2 6 2 422.25036 842.486168 0.08215 3.4688E-05 1.5988 0.0006751 1.681 0.00070979 422.2508718290476 109.91 0.034935 113.58 113.56 113.6 3.6715 -0.27475 -0.00054031 NaN 2.5775 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 886010 + 27895 20773 17595 17605 0.05862399868772172 NAKVSVAENGF 11 Unmodified _NAKVSVAENGF_ 0 0 0 REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|4|1|sense REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.2919921875 2 568.290745 1134.56694 0.031716 1.8024E-05 0.013097 7.4429E-06 0.044813 2.5467E-05 568.2907816032504 42.979 0.55737 46.666 46.48 47.038 3.6875 67 38 2 0 0 0 0.64297 1 8777 8777 3.8763 0.98711 1 75256 + 27896 26704 17596 17606 32334 32334 0.005036361209931783 NAKVSVAENGF 11 Unmodified _NAKVSVAENGF_ 0 0 0 REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|4|1|sense REV__L1MC3_dup10465|chr14:92697798-92698773:+|1.222746642244923|0.4324310917925766|1.5|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 568.290771484375 2 568.290745 1134.56694 0.13951 7.9281E-05 0.10754 6.1113E-05 0.24705 0.00014039 568.2908402660739 43.511 0.45784 46.753 46.503 46.961 3.2419 44 29 2 0 0 0 0.67519 1 8987 8987 0.96228 0.16864 1 99254 + 27897 26704 17596 17606 32335 32335 0.005036361209931783 NALIHLLRF 9 Unmodified _NALIHLLRF_ 0 0 0 REV__L1MB2_dup5657|chr11:59587521-59588251:+|1.821994982639908|0.1584568683491777|3.52|151.0|54|3|anti-sense REV__L1MB2_dup5657|chr11:59587521-59588251:+|1.821994982639908|0.1584568683491777|3.52|151.0|54|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8348388671875 2 548.834926 1095.6553 0.043623 2.3942E-05 0.15615 8.5702E-05 0.19978 0.00010964 548.8348616059552 25.904 0.12648 25.904 25.853 25.979 0 15 8 3 0 0 0 0.46434 1 3631 3631 4.3292 0 1 287570 + 27898 25751 17597 17607 32336 32336 0.11129721222141598 NANVIAVDWI 10 Unmodified _NANVIAVDWI_ 0 0 0 nc|ENSG00000144837|Q53H76-2|PLA1A;nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A nc|ENSG00000144837|Q53H76-2|PLA1A nc|ENSG00000144837|Q53H76-2|PLA1A MSMS UPN48_class_I_Rep_2 6 557.7974243164062 2 557.798206 1113.58186 NaN NaN NaN NaN NaN NaN NaN 58.094 1 61.608 61.108 62.108 3.5142 0 0 0 0.53105 1 12623 12623 3.2813 0.28607 1 27899 3377 17598 17608 32337 32337 0.029611279890104925 NAQAAALY 8 Unmodified _NAQAAALY_ 0 0 0 ENST00000483659.5_1_2:85622736-85628768:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG ENST00000483659.5_1_2:85622736-85628768:-|nuORF ENST00000483659.5_1_2:85622736-85628768:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 411.2109680175781 2 411.211235 820.407917 -0.1442 -5.9295E-05 -0.28701 -0.00011802 -0.4312 -0.00017731 411.21100024564026 109.21 0.54909 112.85 112.68 113.23 3.6321 166 68 4 0 0 0 0.82752 1 26509 26509 2.3027 0 1 17552000 27900 872 17599 17609 32338 32338 -0.009470327164876835 NARRRLLPDML 11 Unmodified _NARRRLLPDML_ 0 0 0 ENSG00000118707|ENST00000373872|TGIF2;nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1 ENSG00000118707|ENST00000373872|TGIF2 ENSG00000118707|ENST00000373872|TGIF2 MULTI-MSMS UPN48_class_I_Rep_3 7 452.2630310058594 3 452.262717 1353.76632 0.11362 5.1385E-05 0.24996 0.00011305 0.36358 0.00016443 452.26281114719467 58.176 1.2025 61.708 61.315 62.517 3.5317 128 79 2 0 0 0 0.68024 1 12547 12547 0.50596 0 1 244020 27901 2260 17600 17610 32339 32339 0.1035899286791846 NARRTANFRK 10 Unmodified _NARRTANFRK_ 0 0 0 REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|43|2|sense REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|43|2|sense MSMS UPN48_class_I_Rep_1 5 617.3480834960938 2 617.349794 1232.68504 NaN NaN NaN NaN NaN NaN NaN 63.367 1 66.825 66.325 67.325 3.4578 0 0 0 0.53105 1 14260 14260 1.3295 0.25807 1 + 27902 30052 17601 17611 32340 32340 0.07800053220171321 NARRTANFRK 10 Unmodified _NARRTANFRK_ 0 0 0 REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|43|2|sense REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|43|2|sense MSMS UPN48_class_I_Rep_3 7 617.3470458984375 2 617.349794 1232.68504 NaN NaN NaN NaN NaN NaN NaN 63.244 1 66.753 66.253 67.253 3.5091 0 0 0 0.53105 1 14123 14123 1.3295 0.25807 1 + 27903 30052 17601 17611 32341 32341 0.07800053220171321 NAVQIFDPFL 10 Unmodified _NAVQIFDPFL_ 0 0 0 L1MA2_dup1716|chr4:73175451-73176536:+|1.05412567519553|0.0174883996326986|5.91|150.0|45|1|anti-sense L1MA2_dup1716|chr4:73175451-73176536:+|1.05412567519553|0.0174883996326986|5.91|150.0|45|1|anti-sense L1MA2_dup1716|chr4:73175451-73176536:+|1.05412567519553|0.0174883996326986|5.91|150.0|45|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.3057250976562 2 582.308406 1162.60226 NaN NaN NaN NaN NaN NaN NaN 43.683 1 47.041 46.541 47.541 3.358 0 0 0 0.53105 1 9035 9035 1.4819 0.15237 1 27904 9347 17602 17612 32342 32342 0.02746298648821721 NAWKLRGF 8 Unmodified _NAWKLRGF_ 0 0 0 REV__AluSx_dup100839|chr17:78775873-78776172:+|1.1089377072930582|0.0100020460696669|6.79|150.0|5|2|sense REV__AluSx_dup100839|chr17:78775873-78776172:+|1.1089377072930582|0.0100020460696669|6.79|150.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.2640075683594 2 496.277244 990.539935 0.11597 5.7552E-05 -1.7785 -0.00088261 -1.6625 -0.00082506 496.2762330979445 54.969 0.20206 58.47 58.374 58.577 3.5014 16 12 2 0 0 0 0.82752 1 12464 12464 9.3474 0 1 43110 + 27905 17127 17603 17613 32343 32343 0.04428617091139131 NAYNPYGY 8 Unmodified _NAYNPYGY_ 0 0 0 REV__nc|ENSG00000121904|Q7Z408|CSMD2 REV__nc|ENSG00000121904|Q7Z408|CSMD2 MSMS UPN46_class_I_Rep_3 1 481.2035827636719 2 481.20615 960.397747 NaN NaN NaN NaN NaN NaN NaN 15.538 1 15.538 15.038 16.038 0 0 0 0 0.40625 1 907 907 2.3027 0.24298 1 + 27906 18735 17604 17614 32344 32344 -0.08403640441713378 NAYTGIVLLR 10 Unmodified _NAYTGIVLLR_ 0 0 0 ENST00000535245.1_1_12:121017538-121019044:-|nuORF;ENSG00000167272|ENST00000357500|POP5;ENST00000542776.5_1_12:121017123-121019113:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF MSMS UPN48_class_I_Rep_2 6 560.3287353515625 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 58.136 1 61.635 61.135 62.135 3.4987 0 0 0 0.53105 1 12636 12636 4.897 1.3005 1 27907 4296 17605 17615 32345 32345 0.09021693777026485 NAYTGIVLLR 10 Unmodified _NAYTGIVLLR_ 0 0 0 ENST00000535245.1_1_12:121017538-121019044:-|nuORF;ENSG00000167272|ENST00000357500|POP5;ENST00000542776.5_1_12:121017123-121019113:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 560.2962036132812 2 560.329673 1118.64479 0.35071 0.00019651 -0.54402 -0.00030483 -0.19331 -0.00010832 560.3290639925326 57.734 0.13346 61.265 61.224 61.358 3.5317 11 8 2 0 0 0 0.84575 1 12469 12469 14.405 6.2499 1 64096 27908 4296 17605 17615 32346 32346 0.09021693777026485 NCADDNDDDDD 11 Unmodified _NCADDNDDDDD_ 0 0 0 REV__ENST00000366930.8_1_1:218614709-218614793:+|nuORF REV__ENST00000366930.8_1_1:218614709-218614793:+|nuORF MSMS UPN47_class_I_Rep_2 3 613.6729125976562 2 613.672936 1225.33132 NaN NaN NaN NaN NaN NaN NaN 12.271 1 15.66 15.16 16.16 3.3885 0 0 0 0.38417 1 51 51 0 0 1 + 27909 21919 17606 17616 32347 32347 -0.2723333364726841 NCAYKSRHIPN 11 Unmodified _NCAYKSRHIPN_ 0 0 0 HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|65|3|sense HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|65|3|sense HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|65|3|sense MSMS UPN47_class_I_Rep_2 3 434.8820495605469 3 434.883906 1301.62989 NaN NaN NaN NaN NaN NaN NaN 35.129 1 38.554 38.054 39.054 3.4253 0 0 0 0.38417 1 6438 6438 1.1098 0.33322 1 27910 8297 17607 17617 32348 32348 -0.008861213626005338 NCCTSMQWK 9 Unmodified _NCCTSMQWK_ 0 0 0 L1MC2_dup3148|chr9:26854603-26855618:+|1.5622672048828798|0.0577530955543476|4.76|151.0|7|1|sense L1MC2_dup3148|chr9:26854603-26855618:+|1.5622672048828798|0.0577530955543476|4.76|151.0|7|1|sense L1MC2_dup3148|chr9:26854603-26855618:+|1.5622672048828798|0.0577530955543476|4.76|151.0|7|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 550.7720336914062 2 550.719729 1099.42491 0.21416 0.00011794 -1.6377 -0.00090193 -1.4236 -0.00078399 551.2198637395647 44.984 0.16995 48.228 48.166 48.336 3.2441 12 11 2 0 0 0 0.12321 1 9496 9496 1.6526 0.32309 1 81228 27911 11251 17608 17618 32349 32349 -0.12082939488846023 NCDDPETEE 9 Unmodified _NCDDPETEE_ 0 0 0 ENSG00000145192|ENST00000411641|AHSG ENSG00000145192|ENST00000411641|AHSG ENSG00000145192|ENST00000411641|AHSG MSMS UPN46_class_I_Rep_3 1 526.1787109375 2 526.179669 1050.34478 NaN NaN NaN NaN NaN NaN NaN 97.042 1 97.042 96.542 97.542 0 0 0 0 0.39518 1 23603 23603 1.8442 0.51471 1 27912 3386 17609 17619 32350 32350 -0.17837431077327892 NCFCCWYW 8 Unmodified _NCFCCWYW_ 0 0 0 ENST00000418559.5_1_2:183594660-183605065:+|nuORF ENST00000418559.5_1_2:183594660-183605065:+|nuORF ENST00000418559.5_1_2:183594660-183605065:+|nuORF MSMS UPN46_class_I_Rep_3 1 562.6910400390625 2 562.692983 1123.37141 NaN NaN NaN NaN NaN NaN NaN 116.36 1 116.36 115.86 116.86 0 0 0 0 0.40738 1 28799 28799 0.79363 0 1 27913 6668 17610 17620 32351 32351 -0.1853369220073091 NCFYFYWV 8 Unmodified _NCFYFYWV_ 0 0 0 ENST00000336838.10_1_2:55591129-55601970:-|nuORF ENST00000336838.10_1_2:55591129-55601970:-|nuORF ENST00000336838.10_1_2:55591129-55601970:-|nuORF MSMS UPN47_class_I_Rep_1 2 571.2451171875 2 571.244221 1140.47389 NaN NaN NaN NaN NaN NaN NaN 53.297 1 56.825 56.325 57.325 3.5278 0 0 0 0.40738 1 11929 11929 0.79363 0.10326 1 27914 6211 17611 17621 32352 32352 -0.0907295986594363 NCKLCIFLH 9 Unmodified _NCKLCIFLH_ 0 0 0 REV__L1ME4b_dup9679|chr7:139880435-139881173:-|1.6378885642205516|0.0801934297434096|4.35|151.0|42|2|anti-sense REV__L1ME4b_dup9679|chr7:139880435-139881173:-|1.6378885642205516|0.0801934297434096|4.35|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 545.78125 2 545.780447 1089.54634 NaN NaN NaN NaN NaN NaN NaN 40.334 1 43.839 43.339 44.339 3.5048 0 0 0 0.39428 1 7227 7227 2.0598 0 1 + 27915 28311 17612 17622 32353 32353 0.005150509359737043 NCKREKRLTL 10 Unmodified _NCKREKRLTL_ 0 0 0 REV__ENST00000381396.9_1_16:19535357-19543792:+|nuORF REV__ENST00000381396.9_1_16:19535357-19543792:+|nuORF MSMS UPN48_class_I_Rep_3 7 630.8655395507812 2 630.863889 1259.71322 NaN NaN NaN NaN NaN NaN NaN 26.516 1 30.282 29.782 30.782 3.7663 0 0 0 0.53105 1 3366 3366 1.4819 0 1 + 27916 22062 17613 17623 32354 32354 0.09375615085241407 NCKSKISSKY 10 Unmodified _NCKSKISSKY_ 0 0 0 MLT1B-int_dup36|chr1:247304674-247305011:+|1.2489421627150843|0.2587707301225545|2.27|151.0|21|3|anti-sense MLT1B-int_dup36|chr1:247304674-247305011:+|1.2489421627150843|0.2587707301225545|2.27|151.0|21|3|anti-sense MLT1B-int_dup36|chr1:247304674-247305011:+|1.2489421627150843|0.2587707301225545|2.27|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_1 2 579.3060913085938 2 579.302798 1156.59104 NaN NaN NaN NaN NaN NaN NaN 56.069 1 59.548 59.048 60.048 3.4785 0 0 0 0.53105 1 12777 12777 9.3831 0.035688 1 27917 16286 17614 17624 32355 32355 0.019011532830063516 NCLHGFFMF 9 Unmodified _NCLHGFFMF_ 0 0 0 REV__L1PB1_dup7225|chr9:100133951-100134750:-|1.2623599977953783|0.0145796697246879|6.44|150.0|47|3|anti-sense REV__L1PB1_dup7225|chr9:100133951-100134750:-|1.2623599977953783|0.0145796697246879|6.44|150.0|47|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.243408203125 2 558.243698 1114.47284 0.38291 0.00021376 -0.68652 -0.00038325 -0.30361 -0.00016949 558.7449530305341 61.26 0.50424 64.425 64.208 64.712 3.1651 47 41 2 0 0 0 0.45688 1 14458 14458 4.756 1.4747 1 76922 + 27918 30487 17615 17625 32356 32356 -0.0798149750646644 NCNGCYETCCC 11 Unmodified _NCNGCYETCCC_ 0 0 0 REV__Tigger3a_dup2792|chr8:97648983-97649205:+|2.195914339784681|0.0155086723887092|7.15|151.0|10|1|anti-sense REV__Tigger3a_dup2792|chr8:97648983-97649205:+|2.195914339784681|0.0155086723887092|7.15|151.0|10|1|anti-sense MSMS UPN47_class_I_Rep_2 3 404.7917785644531 3 404.779745 1211.31741 NaN NaN NaN NaN NaN NaN NaN 78.868 1 82.223 81.723 82.723 3.3554 0 0 0 0.38417 1 19607 19607 0 0 1 + 27919 32714 17616 17626 32357 32357 -0.27980020476888967 NCPQFKQFN 9 Unmodified _NCPQFKQFN_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|295|2|anti-sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|295|2|anti-sense MSMS UPN47_class_I_Rep_1 2 563.2601928710938 2 563.260933 1124.50731 NaN NaN NaN NaN NaN NaN NaN 30.695 1 34.439 33.939 34.939 3.7449 0 0 0 0.39518 1 5051 5051 1.8442 0 1 + 27920 23311 17617 17627 32358 32358 -0.04995958094013986 NCQFIALYY 9 Unmodified _NCQFIALYY_ 0 0 0 REV__nc|ENSG00000154889|Q53F39-5|MPPE1 REV__nc|ENSG00000154889|Q53F39-5|MPPE1 MSMS UPN47_class_I_Rep_2 3 567.7674560546875 2 567.76806 1133.52157 NaN NaN NaN NaN NaN NaN NaN 28.014 1 31.512 31.012 32.012 3.4986 0 0 0 0.39326 1 4287 4287 2.3027 0.4585 1 + 27921 19751 17618 17628 32359 32359 -0.03985305665764827 NCRQSPTVNI 10 Unmodified _NCRQSPTVNI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN46_class_I_Rep_3 1 566.28173828125 2 566.282397 1130.55024 NaN NaN NaN NaN NaN NaN NaN 35.032 1 35.032 34.532 35.532 0 0 0 0 0.53105 1 6329 6329 1.1933 0 1 + 27922 19771 17619 17629 32360 32360 -0.009811880365987236 NCTSFRNVCSC 11 Unmodified _NCTSFRNVCSC_ 0 0 0 L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|172|2|anti-sense L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|172|2|anti-sense L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|172|2|anti-sense MSMS UPN47_class_I_Rep_1 2 617.2435302734375 2 617.2441 1232.47365 NaN NaN NaN NaN NaN NaN NaN 44.302 1 47.997 47.497 48.497 3.6951 0 0 0 0.38417 1 9198 9198 1.0715 0.46996 1 27923 13881 17620 17630 32361 32361 -0.1332907091971265 NCYNQHPI 8 Unmodified _NCYNQHPI_ 0 0 0 REV__L1ME3A_dup6578|chr7:32507267-32508326:-|2.299298567413011|0.0501712489607761|5.52|151.0|24|2|sense REV__L1ME3A_dup6578|chr7:32507267-32508326:-|2.299298567413011|0.0501712489607761|5.52|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 494.7191162109375 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 114.67 1 114.67 114.17 115.17 0 0 0 0 0.40604 1 28349 28349 2.5775 0.27475 1 + 27924 28024 17621 17631 32362 32362 -0.07096489190928423 NCYNQHPI 8 Unmodified _NCYNQHPI_ 0 0 0 REV__L1ME3A_dup6578|chr7:32507267-32508326:-|2.299298567413011|0.0501712489607761|5.52|151.0|24|2|sense REV__L1ME3A_dup6578|chr7:32507267-32508326:-|2.299298567413011|0.0501712489607761|5.52|151.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 494.7190246582031 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 19.298 1 22.948 22.448 23.448 3.6497 0 0 0 0.40604 1 1446 1446 2.5775 0 1 + 27925 28024 17621 17631 32363 32363 -0.07096489190928423 NDARRIML 8 Unmodified _NDARRIML_ 0 0 0 REV__L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|77|1|anti-sense REV__L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|77|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 494.7724914550781 2 494.771468 987.528384 0.27024 0.00013371 -0.4804 -0.00023769 -0.21017 -0.00010398 494.77100871170535 77.93 0.56579 81.553 81.262 81.827 3.6222 72 56 2 0 0 0 0.82752 1 18501 18501 12.532 7.3009 1 124220 + 27926 25609 17622 17632 32364 32364 0.03412052005489841 NDCHCNWCE 9 Unmodified _NDCHCNWCE_ 0 0 0 L1PA4_dup1407|chr2:148424208-148427801:+|2.477228424978399|0.1500710081996029|4.05|151.0|114|1|anti-sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|257|2|anti-sense;L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|304|3|anti-sense L1PA4_dup1407|chr2:148424208-148427801:+|2.477228424978399|0.1500710081996029|4.05|151.0|114|1|anti-sense L1PA4_dup1407|chr2:148424208-148427801:+|2.477228424978399|0.1500710081996029|4.05|151.0|114|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.2388916015625 2 562.173143 1122.33173 NaN NaN NaN NaN NaN NaN NaN 20.773 1 20.773 20.273 21.273 0 0 0 0 0.40098 1 2216 2216 0.45834 0.45834 1 27927 14203 17623 17633 32365 32365 -0.22453863942087082 NDCHSHWCE 9 Unmodified _NDCHSHWCE_ 0 0 0 L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|251|2|anti-sense L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|251|2|anti-sense L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|251|2|anti-sense MSMS UPN47_class_I_Rep_2 3 565.2178344726562 2 565.692558 1129.37056 NaN NaN NaN NaN NaN NaN NaN 114.2 1 117.71 117.21 118.21 3.5109 0 0 0 0.4007 1 27802 27802 0.52476 0 1 27928 14494 17624 17634 32366 32366 -0.18894815316048152 NDDDDDDDGDD 11 Unmodified _NDDDDDDDGDD_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;EZH2|p.Q507Afs*8|1|0.06|ENSG00000106462|chr7:148815517-148815518|TG/-|frameshift_variant;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MSMS UPN47_class_I_Rep_3 4 613.181640625 2 613.165998 1224.31744 NaN NaN NaN NaN NaN NaN NaN 19.356 1 22.707 22.207 23.207 3.3514 0 0 0 0.38417 1 1794 1794 0 0 1 27929 1789 17625 17635 32367 32367 -0.2857428787469871 NDDDDDDDGDD 11 Unmodified _NDDDDDDDGDD_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;EZH2|p.Q507Afs*8|1|0.06|ENSG00000106462|chr7:148815517-148815518|TG/-|frameshift_variant;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MSMS UPN48_class_I_Rep_1 5 613.1795043945312 2 613.165998 1224.31744 NaN NaN NaN NaN NaN NaN NaN 118.28 1 121.91 121.41 122.41 3.6215 0 0 0 0.38417 1 28846 28846 0 0 1 27930 1789 17625 17635 32368 32368 -0.2857428787469871 NDDDDDDDGDD 11 Unmodified _NDDDDDDDGDD_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;EZH2|p.Q507Afs*8|1|0.06|ENSG00000106462|chr7:148815517-148815518|TG/-|frameshift_variant;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MSMS UPN48_class_I_Rep_3 7 613.1793212890625 2 613.165998 1224.31744 NaN NaN NaN NaN NaN NaN NaN 111.43 1 115.09 114.59 115.59 3.6654 0 0 0 0.38417 1 26446 26446 0 0 1 27931 1789 17625 17635 32369 32369 -0.2857428787469871 NDDSSLRMKL 10 Unmodified _NDDSSLRMKL_ 0 0 0 L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|104|2|anti-sense L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|104|2|anti-sense L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|104|2|anti-sense MSMS UPN48_class_I_Rep_2 6 589.8065185546875 2 589.795337 1177.57612 NaN NaN NaN NaN NaN NaN NaN 67.297 1 70.793 70.293 71.293 3.4964 0 0 0 0.53105 1 15442 15442 8.1555 0.24537 1 27932 12779 17626 17636 32370 32370 -0.005563385849882252 NDEIKQRYV 9 Unmodified _NDEIKQRYV_ 0 0 0 REV__ENSG00000165891|ENST00000322886|E2F7 REV__ENSG00000165891|ENST00000322886|E2F7 MSMS UPN48_class_I_Rep_1 5 582.8048095703125 2 582.80402 1163.59349 NaN NaN NaN NaN NaN NaN NaN 19.623 1 23.161 22.661 23.661 3.5378 0 0 0 0.39428 1 1520 1520 2.0598 1.2661 1 + 27933 20141 17627 17637 32371 32371 0.018233250123103062 NDEVFVFGLN 10 Unmodified _NDEVFVFGLN_ 0 0 0 nc|ENSG00000136144|Q8NDN9-2|RCBTB1;ENSG00000136144|ENST00000378302|RCBTB1 nc|ENSG00000136144|Q8NDN9-2|RCBTB1 nc|ENSG00000136144|Q8NDN9-2|RCBTB1 MULTI-MSMS UPN47_class_I_Rep_1 2 577.27978515625 2 577.279846 1152.54514 0.36489 0.00021064 0.276 0.00015933 0.64089 0.00036997 577.2797338664304 73.477 0.87937 76.863 76.601 77.48 3.3861 158 82 3 0 0 0 0.53004 2 18049 18049;18083 8.1555 1.4324 1 327250 27934 2951 17628 17638 32372;32373 32372 -0.025031686275497123 NDEVFVFGLN 10 Unmodified _NDEVFVFGLN_ 0 0 0 nc|ENSG00000136144|Q8NDN9-2|RCBTB1;ENSG00000136144|ENST00000378302|RCBTB1 nc|ENSG00000136144|Q8NDN9-2|RCBTB1 nc|ENSG00000136144|Q8NDN9-2|RCBTB1 MULTI-MSMS UPN47_class_I_Rep_3 4 577.2801513671875 2 577.279846 1152.54514 0.45581 0.00026313 0.25425 0.00014678 0.71006 0.0004099 577.2796977059983 73.739 0.80479 76.975 76.623 77.428 3.2363 155 81 3 0 0 0 0.53004 2 18188 18188;18228 8.1555 1.4324 1 409530 27935 2951 17628 17638 32374;32375 32374 -0.025031686275497123 NDIFKGFCN 9 Unmodified _NDIFKGFCN_ 0 0 0 REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|113|3|anti-sense REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|113|3|anti-sense MSMS UPN48_class_I_Rep_3 7 529.2423095703125 2 529.242209 1056.46987 NaN NaN NaN NaN NaN NaN NaN 92.22 1 96.098 95.598 96.598 3.8782 0 0 0 0.38784 1 21869 21869 3.5965 0 1 + 27936 26114 17629 17639 32376 32376 -0.05611049359640674 NDILVRAEF 9 Unmodified _NDILVRAEF_ 0 0 0 ENSG00000085465|ENST00000369732|OVGP1 ENSG00000085465|ENST00000369732|OVGP1 ENSG00000085465|ENST00000369732|OVGP1 MULTI-MSMS UPN47_class_I_Rep_1 2 538.789794921875 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.33908 1 12234 12234 11.495 1.4208 1 312930 27937 1263 17630 17640 32377 32377 0.03144841471953441 NDKLSKIIIHK 11 Unmodified _NDKLSKIIIHK_ 0 0 0 REV__L1MEc_dup14314|chr13:48988912-48989754:+|1.5537129762627462|0.0183842881974667|6.4|151.0|11|1|sense REV__L1MEc_dup14314|chr13:48988912-48989754:+|1.5537129762627462|0.0183842881974667|6.4|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.2669982910156 3 436.938117 1307.79252 -0.036277 -1.5851E-05 4.1477 0.0018123 4.1115 0.0017965 437.2745835533011 51.249 0.14997 54.774 54.677 54.827 3.5246 13 9 2 0 0 0 0.64031 1 10556 10556 4.1166 0 1 98804 + 27938 28379 17631 17641 32378 32378 0.1509358531104681 NDKQIVKLF 9 Unmodified _NDKQIVKLF_ 0 0 0 ENST00000586435.1_1_17:33316537-33318256:+|nuORF;nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3 ENST00000586435.1_1_17:33316537-33318256:+|nuORF ENST00000586435.1_1_17:33316537-33318256:+|nuORF MSMS UPN47_class_I_Rep_1 2 553.2926025390625 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 67.699 1 71.06 70.56 71.56 3.3611 0 0 0 0.38478 1 16296 16296 4.3292 0 1 27939 692 17632 17642 32379 32379 0.08622291402753035 NDLNRFHQR 9 Unmodified _NDLNRFHQR_ 0 0 0 L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|22|3|sense L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|22|3|sense L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 600.3051147460938 2 600.305052 1198.59555 NaN NaN NaN NaN NaN NaN NaN 40.33 1 43.997 43.497 44.497 3.6668 0 0 0 0.39518 1 7985 7985 1.8442 0.36234 1 27940 12360 17633 17643 32380 32380 0.004197985407699889 NDNCEDSSCSC 11 Unmodified _NDNCEDSSCSC_ 0 0 0 REV__ENSG00000163513.19,TGFBR2,chr3,+,I10.1,30688512,30691419|24|7.84|4|intron REV__ENSG00000163513.19,TGFBR2,chr3,+,I10.1,30688512,30691419|24|7.84|4|intron MSMS UPN46_class_I_Rep_3 1 588.6654663085938 2 588.665545 1175.31654 NaN NaN NaN NaN NaN NaN NaN 72.561 1 72.561 72.061 73.061 0 0 0 0 0.38417 1 16777 16777 0 0 1 + 27941 19981 17634 17644 32381 32381 -0.2641082032057511 NDNEDDDDDDD 11 Unmodified _NDNEDDDDDDD_ 0 0 0 REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF MSMS UPN48_class_I_Rep_1 5 648.6849975585938 2 648.684555 1295.35456 NaN NaN NaN NaN NaN NaN NaN 29.371 1 32.921 32.421 33.421 3.5499 0 0 0 0.38417 1 4072 4072 0 0 1 + 27942 22320 17635 17645 32382 32382 -0.28130616328917313 NDNEDDDDDDD 11 Unmodified _NDNEDDDDDDD_ 0 0 0 REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF MSMS UPN48_class_I_Rep_3 7 648.6838989257812 2 648.684555 1295.35456 NaN NaN NaN NaN NaN NaN NaN 28.737 1 32.48 31.98 32.98 3.7424 0 0 0 0.38417 1 3947 3947 0 0 1 + 27943 22320 17635 17645 32383 32383 -0.28130616328917313 NDNEDDDDDDD 11 Unmodified _NDNEDDDDDDD_ 0 0 0 REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF MSMS UPN48_class_I_Rep_3 7 648.685791015625 2 648.684555 1295.35456 NaN NaN NaN NaN NaN NaN NaN 28.763 1 32.505 32.005 33.005 3.7424 0 0 0 0.38417 1 3955 3955 0 0 1 + 27944 22320 17635 17645 32384 32384 -0.28130616328917313 NDNEDDDDDDD 11 Unmodified _NDNEDDDDDDD_ 0 0 0 REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF MSMS UPN48_class_I_Rep_3 7 648.685546875 2 648.684555 1295.35456 NaN NaN NaN NaN NaN NaN NaN 28.891 1 32.633 32.133 33.133 3.7424 0 0 0 0.38417 1 3989 3989 0 0 1 + 27945 22320 17635 17645 32385 32385 -0.28130616328917313 NDNEDDDDDDD 11 Unmodified _NDNEDDDDDDD_ 0 0 0 REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF MSMS UPN48_class_I_Rep_3 7 648.68603515625 2 648.684555 1295.35456 NaN NaN NaN NaN NaN NaN NaN 29.166 1 32.894 32.394 33.394 3.7286 0 0 0 0.38417 1 4059 4059 0 0 1 + 27946 22320 17635 17645 32386 32386 -0.28130616328917313 NDNEDDDDDDD 11 Unmodified _NDNEDDDDDDD_ 0 0 0 REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF REV__ENST00000438918.1_1_2:204637659-204638058:-|nuORF MSMS UPN48_class_I_Rep_3 7 648.6854248046875 2 648.684555 1295.35456 NaN NaN NaN NaN NaN NaN NaN 29.53 1 33.259 32.759 33.759 3.7286 0 0 0 0.38417 1 4151 4151 0 0 1 + 27947 22320 17635 17645 32387 32387 -0.28130616328917313 NDNSKSLLIN 10 Unmodified _NDNSKSLLIN_ 0 0 0 L1M1_dup8735|chr17:29832967-29833681:-|1.8828674083409935|0.0144165487895311|7.03|151.0|8|2|sense L1M1_dup8735|chr17:29832967-29833681:-|1.8828674083409935|0.0144165487895311|7.03|151.0|8|2|sense L1M1_dup8735|chr17:29832967-29833681:-|1.8828674083409935|0.0144165487895311|7.03|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 559.2978515625 2 559.296027 1116.5775 NaN NaN NaN NaN NaN NaN NaN 30.698 1 34.413 33.913 34.913 3.7146 0 0 0 0.53105 1 4457 4457 1.4819 0 1 27948 8641 17636 17646 32388 32388 0.023876187754467537 NDPAARPA 8 Unmodified _NDPAARPA_ 0 0 0 ENST00000588460.5_1_17:74733495-74734059:+|nuORF ENST00000588460.5_1_17:74733495-74734059:+|nuORF ENST00000588460.5_1_17:74733495-74734059:+|nuORF MSMS UPN48_class_I_Rep_2 6 406.2183837890625 2 406.206484 810.398415 NaN NaN NaN NaN NaN NaN NaN 65.55 1 69.029 68.529 69.529 3.4792 0 0 0 0.40643 1 14908 14908 2.0598 0.21551 1 27949 7599 17637 17647 32389 32389 -0.014368010020120892 NDPAARPA 8 Unmodified _NDPAARPA_ 0 0 0 ENST00000588460.5_1_17:74733495-74734059:+|nuORF ENST00000588460.5_1_17:74733495-74734059:+|nuORF ENST00000588460.5_1_17:74733495-74734059:+|nuORF MSMS UPN48_class_I_Rep_2 6 406.2186584472656 2 406.206484 810.398415 NaN NaN NaN NaN NaN NaN NaN 65.831 1 69.318 68.818 69.818 3.4866 0 0 0 0.40643 1 14993 14993 2.0598 0.21551 1 27950 7599 17637 17647 32390 32390 -0.014368010020120892 NDQGMQDDPPM 11 Unmodified _NDQGMQDDPPM_ 0 0 0 REV__ENSG00000113658|ENST00000545279|SMAD5 REV__ENSG00000113658|ENST00000545279|SMAD5 MSMS UPN48_class_I_Rep_1 5 624.2356567382812 2 624.236995 1246.45944 NaN NaN NaN NaN NaN NaN NaN 15.035 1 18.554 18.054 19.054 3.5184 0 0 0 0.38417 1 525 525 0.26902 0.26902 1 + 27951 18513 17638 17648 32391 32391 -0.15393444867049766 NDRQLHCSQ 9 Unmodified _NDRQLHCSQ_ 0 0 0 REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|206|1|anti-sense REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|206|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7490234375 2 550.748721 1099.48289 NaN NaN NaN NaN NaN NaN NaN 51.08 1 51.08 50.58 51.58 0 0 0 0 0.39036 1 10831 10831 2.9952 0 1 + 27952 30239 17639 17649 32392 32392 -0.06287218247575765 NDRREKQH 8 Unmodified _NDRREKQH_ 0 0 0 REV__ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|115|3|anti-sense REV__ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7785034179688 2 541.776128 1081.5377 NaN NaN NaN NaN NaN NaN NaN 35.655 1 39.165 38.665 39.665 3.5101 0 0 0 0.40625 1 5859 5859 2.3027 0.24298 1 + 27953 23252 17640 17650 32393 32393 0.00019536615377546696 NDSRYWWG 8 Unmodified _NDSRYWWG_ 0 0 0 L1PA16_dup13569|chr21:5448058-5448586:+|1.1068638513188322|0.0220262611338321|5.65|148.0|4|1|sense L1PA16_dup13569|chr21:5448058-5448586:+|1.1068638513188322|0.0220262611338321|5.65|148.0|4|1|sense L1PA16_dup13569|chr21:5448058-5448586:+|1.1068638513188322|0.0220262611338321|5.65|148.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 542.236572265625 2 542.235773 1082.45699 NaN NaN NaN NaN NaN NaN NaN 62.039 1 65.513 65.013 66.013 3.4738 0 0 0 0.40738 1 13830 13830 0.79363 0 1 27954 14053 17641 17651 32394 32394 -0.08093744427537786 NDSSVTNHPSL 11 Unmodified _NDSSVTNHPSL_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|258|1|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|258|1|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7708129882812 2 585.772916 1169.53128 NaN NaN NaN NaN NaN NaN NaN 56.344 1 59.517 59.017 60.017 3.1721 0 0 0 0.38417 1 12945 12945 5.7834 0.55276 1 + 27955 25091 17642 17652 32395 32395 -0.04670446126669958 NDTPYKQK 8 Unmodified _NDTPYKQK_ 0 0 0 ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL MULTI-MSMS UPN47_class_I_Rep_2 3 497.2535095214844 2 497.253631 992.49271 0.0044883 2.2318E-06 -0.16111 -8.0113E-05 -0.15662 -7.7881E-05 497.2535152381283 44.908 0.8041 48.263 47.955 48.759 3.3555 72 49 2 0 0 0 0.82752 1 9416 9416 10.074 0 1 119940 27956 4206 17643 17653 32396 32396 -0.003837069705241447 NDTQFLQK 8 Unmodified _NDTQFLQK_ 0 0 0 REV__L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|48|3|anti-sense REV__L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|48|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.25347900390625 2 497.253631 992.49271 0.0032664 1.6242E-06 0.10499 5.2206E-05 0.10826 5.383E-05 497.25364907231165 45.055 0.81224 48.299 47.969 48.781 3.2441 82 55 2 0 0 0 0.82752 2 9532 9532;9570 14.838 0 1 149040 + 27957 24037 17644 17654 32397;32398 32397 -0.0038370697051277602 NDVDIFLIY 9 Unmodified _NDVDIFLIY_ 0 0 0 REV__COLGALT2|p.A388Hfs*2|1|0.03|ENSG00000198756|chr1:183945539-183945539|C/-|frameshift_variant REV__COLGALT2|p.A388Hfs*2|1|0.03|ENSG00000198756|chr1:183945539-183945539|C/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 556.2885131835938 2 556.28714 1110.55973 NaN NaN NaN NaN NaN NaN NaN 79.475 1 82.831 82.331 83.331 3.3554 0 0 0 0.38478 1 19786 19786 4.3292 0 1 + 27958 17465 17645 17655 32399 32399 0.00886903520586202 NDVLLLLKV 9 Unmodified _NDVLLLLKV_ 0 0 0 REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|63|3|sense REV__L1M1_dup1799|chr3:142325496-142327682:-|8.142736866794339|0.2085899827891461|5.29|151.0|63|3|sense MSMS UPN46_class_I_Rep_3 1 513.434814453125 2 513.831517 1025.64848 NaN NaN NaN NaN NaN NaN NaN 80.223 1 80.223 79.723 80.723 0 0 0 0 0.40098 1 18887 18887 0.45834 0 1 + 27959 24025 17646 17656 32400 32400 0.13668363550914364 NDYGFVFM 8 Unmodified _NDYGFVFM_ 0 0 0 REV__ENST00000443790.1_1_3:5229490-5231099:+|nuORF REV__ENST00000443790.1_1_3:5229490-5231099:+|nuORF MSMS UPN47_class_I_Rep_2 3 496.7120056152344 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 37.294 1 40.692 40.192 41.192 3.3988 0 0 0 0.40738 1 7095 7095 0.79363 0 1 + 27960 19084 17647 17657 32401 32401 -0.0850952565397165 NEANKPLPN 9 Unmodified _NEANKPLPN_ 0 0 0 REV__ENSG00000110048|ENST00000263847|OSBP REV__ENSG00000110048|ENST00000263847|OSBP MSMS UPN47_class_I_Rep_1 2 498.75860595703125 2 498.759081 995.503609 NaN NaN NaN NaN NaN NaN NaN 42.037 1 45.717 45.217 46.217 3.6792 0 0 0 0.37692 1 8504 8504 6.2058 1.3088 1 + 27961 18422 17648 17658 32402 32402 0.005676954037539872 NEANKPLPN 9 Unmodified _NEANKPLPN_ 0 0 0 REV__ENSG00000110048|ENST00000263847|OSBP REV__ENSG00000110048|ENST00000263847|OSBP MSMS UPN47_class_I_Rep_3 4 498.7593688964844 2 498.759081 995.503609 NaN NaN NaN NaN NaN NaN NaN 42.663 1 45.902 45.402 46.402 3.2394 0 0 0 0.38639 1 8776 8776 3.9444 1.2092 1 + 27962 18422 17648 17658 32403 32403 0.005676954037539872 NEAPIYHG 8 Unmodified _NEAPIYHG_ 0 0 0 L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|52|3|sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|52|3|sense L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|52|3|sense MSMS UPN48_class_I_Rep_1 5 450.7237243652344 2 450.714142 899.413731 NaN NaN NaN NaN NaN NaN NaN 119.16 1 122.78 122.28 123.28 3.6189 0 0 0 0.40738 1 29078 29078 0.79363 0 1 27963 14693 17649 17659 32404 32404 -0.03999934204807687 NEAPPWLGI 9 Unmodified _NEAPPWLGI_ 0 0 0 REV__MLT1G1_dup1650|chr7:75453638-75454224:-|2.183055931872006|0.1050761149076293|4.38|151.0|26|2|anti-sense REV__MLT1G1_dup1650|chr7:75453638-75454224:-|2.183055931872006|0.1050761149076293|4.38|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_2 3 498.75885009765625 2 498.761092 995.507631 NaN NaN NaN NaN NaN NaN NaN 42.41 1 45.771 45.271 46.271 3.3611 0 0 0 0.37476 1 8645 8645 6.7232 0 1 + 27964 31726 17650 17660 32405 32405 0.009697848974610679 NECAKTFF 8 Unmodified _NECAKTFF_ 0 0 0 nc|ENSG00000184517|Q6P2D0-2|ZFP1;ENST00000568079.5_1_16:75182493-75204229:+|nuORF;ENSG00000184517|ENST00000570010|ZFP1 nc|ENSG00000184517|Q6P2D0-2|ZFP1 nc|ENSG00000184517|Q6P2D0-2|ZFP1 MSMS UPN47_class_I_Rep_1 2 480.2325439453125 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 22.649 1 26.353 25.853 26.853 3.7042 0 0 0 0.39819 1 2669 2669 8.5933 2.2392 1 27965 5057 17651 17661 32406 32406 -0.05902123279679472 NECAKTFF 8 Unmodified _NECAKTFF_ 0 0 0 nc|ENSG00000184517|Q6P2D0-2|ZFP1;ENST00000568079.5_1_16:75182493-75204229:+|nuORF;ENSG00000184517|ENST00000570010|ZFP1 nc|ENSG00000184517|Q6P2D0-2|ZFP1 nc|ENSG00000184517|Q6P2D0-2|ZFP1 MSMS UPN47_class_I_Rep_2 3 480.232421875 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 23.272 1 26.717 26.217 27.217 3.4447 0 0 0 0.39819 1 2906 2906 8.5933 0.68312 1 27966 5057 17651 17661 32407 32407 -0.05902123279679472 NECRFQFYR 9 Unmodified _NECRFQFYR_ 0 0 0 REV__ENSG00000137642|ENST00000260197|SORL1 REV__ENSG00000137642|ENST00000260197|SORL1 MSMS UPN47_class_I_Rep_3 4 631.7853393554688 2 631.790389 1261.56623 NaN NaN NaN NaN NaN NaN NaN 56.309 1 59.481 58.981 59.981 3.1721 0 0 0 0.38639 1 12934 12934 3.9444 0 1 + 27967 19238 17652 17662 32408 32408 -0.05409481799711102 NEDFSFHY 8 Unmodified _NEDFSFHY_ 0 0 0 ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2 ENST00000555522.1_1_14:75469672-75471687:+|nuORF ENST00000555522.1_1_14:75469672-75471687:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 530.2769165039062 2 529.714339 1057.41412 0.24822 0.00013148 -0.23709 -0.00012559 0.011124 5.8927E-06 529.7140963743535 56.662 0.44579 56.662 56.523 56.969 0 71 52 2 0 0 0 0.72333 1 12382 12382 61.357 39.611 1 236980 27968 2292 17653 17663 32409 32409 -0.11228559275605221 NEDGWFLV 8 Unmodified _NEDGWFLV_ 0 0 0 REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|42|3|sense REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|42|3|sense MSMS UPN47_class_I_Rep_1 2 490.22808837890625 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 33.621 1 37.319 36.819 37.819 3.6983 0 0 0 0.40738 1 5944 5944 0.79363 0 1 + 27969 26046 17654 17664 32410 32410 -0.0453878089057298 NEDLAKKY 8 Unmodified _NEDLAKKY_ 0 0 0 nc|ENSG00000163788|Q9NRH2-2|SNRK;ENST00000462810.1_1_3:43344695-43373803:+|nuORF;ENSG00000163788|ENST00000296088|SNRK nc|ENSG00000163788|Q9NRH2-2|SNRK nc|ENSG00000163788|Q9NRH2-2|SNRK MULTI-MSMS UPN46_class_I_Rep_3 1 490.7551574707031 2 490.756007 979.497461 -0.14553 -7.142E-05 -2.7626 -0.0013558 -2.9081 -0.0014272 490.7559013377212 21.826 0.23688 21.826 21.724 21.961 0 38 26 2 0 0 0 0.82752 1 2515 2515 4.3292 2.0265 1 29841 27970 4039 17655 17665 32411 32411 0.006891771722393969 NEDNGIIKAF 10 Unmodified _NEDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 560.78564453125 2 560.785296 1119.55604 0.2426 0.00013605 0.17826 9.9963E-05 0.42085 0.00023601 560.7852657429885 50.016 0.79283 53.645 53.138 53.931 3.6285 72 45 2 0 0 0 0.30373 4 10904 10846;10891;10904;10980 32.037 19.797 1 136650 27971 4682 17656 17666 32412;32413;32414;32415 32414 0.0010423374671972852 NEDNGIIKAF 10 Unmodified _NEDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.7860107421875 2 560.785296 1119.55604 0.44686 0.00025059 0.20203 0.0001133 0.64889 0.00036389 560.7853562599139 50.228 0.87732 53.571 53.19 54.068 3.3431 85 45 3 0 0 0 0.2268 3 11048 10964;11048;11092 55.235 31.445 1 142780 27972 4682 17656 17666 32416;32417;32418 32417 0.0010423374671972852 NEDNGIIKAF 10 Unmodified _NEDNGIIKAF_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.7854614257812 2 560.785296 1119.55604 0.50323 0.00028221 0.15515 8.7004E-05 0.65838 0.00036921 560.7852678832363 50.348 1.0209 53.574 53.142 54.163 3.2262 96 56 3 0 0 0 0.36548 2 11108 11108;11150 22.658 10.417 1 152320 27973 4682 17656 17666 32419;32420 32419 0.0010423374671972852 NEDRMRPRP 9 Unmodified _NEDRMRPRP_ 0 0 0 Tigger6b_dup17|chr1:174266458-174267961:+|1.0678710425228062|0.040465168565056|4.72|151.0|45|3|sense Tigger6b_dup17|chr1:174266458-174267961:+|1.0678710425228062|0.040465168565056|4.72|151.0|45|3|sense Tigger6b_dup17|chr1:174266458-174267961:+|1.0678710425228062|0.040465168565056|4.72|151.0|45|3|sense MSMS UPN47_class_I_Rep_1 2 585.79248046875 2 585.793463 1169.57237 NaN NaN NaN NaN NaN NaN NaN 53.416 1 56.944 56.444 57.444 3.5278 0 0 0 0.38639 1 11966 11966 3.9444 0.3479 1 27974 33449 17657 17667 32421 32421 -0.005629635681771106 NEDRMRPRP 9 Unmodified _NEDRMRPRP_ 0 0 0 Tigger6b_dup17|chr1:174266458-174267961:+|1.0678710425228062|0.040465168565056|4.72|151.0|45|3|sense Tigger6b_dup17|chr1:174266458-174267961:+|1.0678710425228062|0.040465168565056|4.72|151.0|45|3|sense Tigger6b_dup17|chr1:174266458-174267961:+|1.0678710425228062|0.040465168565056|4.72|151.0|45|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 585.793701171875 2 585.793463 1169.57237 0.51626 0.00030242 -0.64627 -0.00037858 -0.13001 -7.6161E-05 585.7925786370781 52.868 1.4109 56.194 55.806 57.217 3.3266 153 99 2 0 0 0 0.46869 1 12084 12084 3.9444 0.3479 1 1108400 27975 33449 17657 17667 32422 32422 -0.005629635681771106 NEDTFKQIY 9 Unmodified _NEDTFKQIY_ 0 0 0 nc|ENSG00000182132|Q9NZI2-3|KCNIP1;ENSG00000182132|ENST00000328939|KCNIP1;nc|ENSG00000182132|Q9NZI2-4|KCNIP1;nc|ENSG00000182132|Q9NZI2|KCNIP1;nc|ENSG00000182132|Q9NZI2-5|KCNIP1 nc|ENSG00000182132|Q9NZI2-3|KCNIP1 nc|ENSG00000182132|Q9NZI2-3|KCNIP1 MULTI-MSMS UPN47_class_I_Rep_1 2 579.275634765625 2 579.277303 1156.54005 0.37955 0.00021987 -0.16243 -9.4095E-05 0.21712 0.00012577 579.2771229370014 58.179 0.7961 61.616 61.307 62.103 3.437 82 49 2 0 0 0 0.47763 1 13529 13529 2.9952 0 1 243100 27976 4935 17658 17668 32423 32423 -0.0319547249016523 NEEEDDDDE 9 Unmodified _NEEEDDDDE_ 0 0 0 REV__ENSG00000170633|ENST00000361234|RNF34 REV__ENSG00000170633|ENST00000361234|RNF34 MSMS UPN47_class_I_Rep_3 4 555.1771850585938 2 555.173095 1108.33164 NaN NaN NaN NaN NaN NaN NaN 118 1 121.42 120.92 121.92 3.4238 0 0 0 0.4029 1 29090 29090 0 0 1 + 27977 20373 17659 17669 32424 32424 -0.21819590655718457 NEEGFVRLY 9 Unmodified _NEEGFVRLY_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;nc|ENSG00000143476|Q9NZJ0-2|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS UPN47_class_I_Rep_1 2 563.7802734375 2 563.780013 1125.54547 0.31414 0.00017711 -0.017094 -9.6375E-06 0.29704 0.00016747 563.7798364114749 53.388 0.64738 56.916 56.652 57.299 3.5278 84 43 3 0 0 0 0.04399 3 12003 11950;11961;12003 51.415 33.269 1 143720 27978 3302 17660 17670 32425;32426;32427 32427 -0.012277489076950587 NEEGFVRLY 9 Unmodified _NEEGFVRLY_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;nc|ENSG00000143476|Q9NZJ0-2|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS UPN47_class_I_Rep_2 3 563.7806396484375 2 563.780013 1125.54547 0.51683 0.00029138 -0.88302 -0.00049783 -0.36619 -0.00020645 563.7794024540289 53.706 0.82526 57.032 56.652 57.477 3.3266 93 54 2 0 0 0 0.0061843 5 12074 12025;12028;12070;12074;12125 75.571 47.942 1 133180 27979 3302 17660 17670 32428;32429;32430;32431;32432 32431 -0.012277489076950587 NEEGFVRLY 9 Unmodified _NEEGFVRLY_ 0 0 0 ENSG00000143476|ENST00000366991|DTL;nc|ENSG00000143476|Q9NZJ0-2|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS UPN47_class_I_Rep_3 4 563.7786254882812 2 563.780013 1125.54547 0.47059 0.00026531 -0.68304 -0.00038508 -0.21245 -0.00011977 563.7793990726734 53.888 0.67572 57.074 56.706 57.382 3.1856 87 44 3 0 0 0 0.061655 2 12184 12163;12184 43.982 26.32 1 163620 27980 3302 17660 17670 32433;32434 32434 -0.012277489076950587 NEFEATQKL 9 Unmodified _NEFEATQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS UPN46_class_I_Rep_3 1 540.2725219726562 2 540.272021 1078.52949 0.35097 0.00018962 -0.27701 -0.00014966 0.073958 3.9958E-05 540.2718420265277 41.742 0.38615 41.742 41.562 41.948 0 60 45 2 0 0 0 0.25805 2 8197 8197;8247 16.566 2.951 1 168490 27981 4151 17661 17671 32435;32436 32435 -0.006634551446268233 NEFFYKLK 8 Unmodified _NEFFYKLK_ 0 0 0 MLT1E_dup596|chr11:60208074-60208308:+|2.1605579857053883|0.1788771914663089|3.59|148.0|19|3|anti-sense MLT1E_dup596|chr11:60208074-60208308:+|2.1605579857053883|0.1788771914663089|3.59|148.0|19|3|anti-sense MLT1E_dup596|chr11:60208074-60208308:+|2.1605579857053883|0.1788771914663089|3.59|148.0|19|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 544.2693481445312 2 544.792392 1087.57023 0.58181 0.00031697 -0.1578 -8.597E-05 0.42401 0.000231 544.7922711718351 61.595 0.17562 65.063 64.92 65.096 3.4678 19 15 2 0 0 0 0.72333 1 13689 13689 7.2892 2.96 1 71022 27982 16365 17662 17672 32437 32437 0.029949309656331025 NEFLEFGSY 9 Unmodified _NEFLEFGSY_ 0 0 0 nc|ENSG00000130830|Q00013-3|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF;nc|ENSG00000130830|Q00013-2|MPP1;ENSG00000130830|ENST00000369534|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 MULTI-MSMS UPN46_class_I_Rep_3 1 553.24609375 2 553.245472 1104.47639 0.39316 0.00021751 0.18954 0.00010486 0.58269 0.00032237 553.2456213546194 79.585 0.36397 79.585 79.305 79.669 0 55 35 3 0 0 0 0.21414 2 18710 18677;18710 19.362 11.237 1 221420 27983 16682 17663 17673 32438;32439 32439 -0.07166832927259748 NEFLEFGSY 9 Unmodified _NEFLEFGSY_ 0 0 0 nc|ENSG00000130830|Q00013-3|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF;nc|ENSG00000130830|Q00013-2|MPP1;ENSG00000130830|ENST00000369534|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 MULTI-SECPEP UPN46_class_I_Rep_3 1 553.118408203125 2 553.245472 1104.47639 0.3933 0.00021759 0.014768 8.1701E-06 0.40807 0.00022576 553.2455058302602 79.705 0.099525 79.705 79.669 79.769 0 10 8 2 0 0 0 0.12383 1 18755 18755 3.2813 1.2216 1 91543 27984 16682 17663 17673 32440 32440 -0.07166832927259748 NEFLEFGSY 9 Unmodified _NEFLEFGSY_ 0 0 0 nc|ENSG00000130830|Q00013-3|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF;nc|ENSG00000130830|Q00013-2|MPP1;ENSG00000130830|ENST00000369534|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 MULTI-SECPEP UPN46_class_I_Rep_3 1 553.299072265625 2 553.245472 1104.47639 0.39379 0.00021786 -0.22888 -0.00012662 0.16491 9.1236E-05 553.245139078004 79.841 0.081619 79.841 79.815 79.897 0 8 6 2 0 0 0 0.11884 1 18780 18780 5.7319 2.8426 1 44025 27985 16682 17663 17673 32441 32441 -0.07166832927259748 NEFPEPIKL 9 Unmodified _NEFPEPIKL_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MULTI-SECPEP UPN48_class_I_Rep_2 6 544.2691650390625 2 543.795132 1085.57571 0.54294 0.00029525 -0.11311 -6.1507E-05 0.42983 0.00023374 543.7951162007195 61.379 0.10697 64.853 64.801 64.908 3.4738 11 8 2 0 0 0 0.11642 1 13633 13633 12.241 0 1 97919 27986 1149 17664 17674 32442 32442 0.036346097574551095 NEFPVPEQF 9 Unmodified _NEFPVPEQF_ 0 0 0 ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF;ENST00000461993.1_1_1:40535258-40537202:+|nuORF;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1 ENST00000494114.1_1_1:40536414-40537202:+|nuORF ENST00000494114.1_1_1:40536414-40537202:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 553.7620239257812 2 553.761289 1105.50803 0.3778 0.00020921 0.072157 3.9958E-05 0.44996 0.00024917 553.7613409772509 74.018 0.41576 74.018 73.775 74.191 0 74 45 2 0 0 0 0.32787 2 17142 17142;17191 12.175 4.0192 1 259210 27987 2703 17665 17675 32443;32444 32443 -0.04050840173340475 NEFSLKGVDF 10 Unmodified _NEFSLKGVDF_ 0 0 0 nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1 nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-5|ETS1 MULTI-MSMS UPN46_class_I_Rep_3 1 578.2882690429688 2 578.287671 1154.56079 0.45262 0.00026175 0.52012 0.00030078 0.97274 0.00056252 578.2877738147074 68.627 0.5377 68.627 68.374 68.912 0 105 54 3 0 0 0 0.12325 2 15687 15647;15687 74.772 46.277 1 270770 27988 2876 17666 17676 32445;32446 32446 -0.010308821105127208 NEFTTHVM 8 Oxidation (M) _NEFTTHVM(Oxidation (M))_ NEFTTHVM(1) NEFTTHVM(48) 0 0 1 ENSG00000167081|ENST00000373489|PBX3;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|4|intron;ENSG00000204304|ENST00000375050|PBX2;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000167081|P40426-2|PBX3;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|6|intron;ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|4|intron;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|7|intron;ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|2|intron;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|1|intron;ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|3|intron;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|2|intron;nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1 ENSG00000167081|ENST00000373489|PBX3 ENSG00000167081|ENST00000373489|PBX3 MULTI-MSMS UPN46_class_I_Rep_3 1 497.71868896484375 2 497.718567 993.422581 0.11911 5.9284E-05 0.20298 0.00010103 0.32209 0.00016031 497.7187475013936 33.282 0.5634 33.282 33.011 33.574 0 67 45 2 0 0 0 0.82752 1 5828 5828 48.346 26.599 1 126140 27989 4288 17667 17677 32447 32447 138 -0.07439328630630371 NEGEIIVAR 9 Unmodified _NEGEIIVAR_ 0 0 0 REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|36|2|sense REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.77386474609375 2 500.774731 999.534909 -0.14527 -7.2747E-05 0.26675 0.00013358 0.12148 6.0834E-05 500.7748847358488 43.404 0.6938 47.092 46.819 47.513 3.6875 66 39 2 0 0 0 0.43982 1 8869 8869 5.7319 0 1 123980 + 27990 27420 17668 17678 32448 32448 0.035122684378507074 NEGEIIVAR 9 Unmodified _NEGEIIVAR_ 0 0 0 REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|36|2|sense REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.7736511230469 2 500.774731 999.534909 -0.046311 -2.3191E-05 0.055156 2.7621E-05 0.0088449 4.4293E-06 500.7747110577189 43.889 0.63673 47.131 46.85 47.487 3.2419 70 39 3 0 0 0 0.47197 1 9236 9236 3.5965 0.31518 1 145140 + 27991 27420 17668 17678 32449 32449 0.035122684378507074 NEGFASFFEF 10 Unmodified _NEGFASFFEF_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MSMS UPN48_class_I_Rep_3 7 597.7621459960938 2 597.758746 1193.50294 NaN NaN NaN NaN NaN NaN NaN 43.549 1 47.188 46.688 47.688 3.6385 0 0 0 0.53105 1 8117 8117 3.2813 0.28607 1 27992 3114 17669 17679 32450 32450 -0.08607144035954661 NEGSDDDGNEG 11 Unmodified _NEGSDDDGNEG_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS UPN47_class_I_Rep_1 2 554.6866455078125 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 90.419 1 94.109 93.609 94.609 3.6899 0 0 0 0.38417 1 22591 22591 0 0 1 27993 5040 17670 17680 32451 32451 -0.19053062324701386 NEGSDDDGNEG 11 Unmodified _NEGSDDDGNEG_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS UPN48_class_I_Rep_2 6 554.6865844726562 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 24.705 1 28.341 27.841 28.841 3.6363 0 0 0 0.38417 1 2904 2904 0 0 1 27994 5040 17670 17680 32452 32452 -0.19053062324701386 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.8050537109375 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 59.981 1 63.379 62.879 63.879 3.3982 0 0 0 0.0021275 1 13968 13968 78.61 45.166 1 27995 2593 17671 17681 32453 32453 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.8045654296875 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.112 1 63.51 63.01 64.01 3.3982 0 0 0 2.5944000000000002E-161 1 14009 14009 168.9 95.934 1 27996 2593 17671 17681 32454 32454 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.8043212890625 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.231 1 63.629 63.129 64.129 3.3982 0 0 0 7.060699999999999E-212 1 14044 14044 180.74 107.77 1 27997 2593 17671 17681 32455 32455 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.8043212890625 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.356 1 63.754 63.254 64.254 3.3982 0 0 0 7.060699999999999E-212 1 14082 14082 180.74 107.77 1 27998 2593 17671 17681 32456 32456 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.804443359375 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.494 1 63.875 63.375 64.375 3.3815 0 0 0 2.9674000000000005E-19 1 14122 14122 97.284 62.352 1 27999 2593 17671 17681 32457 32457 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.8046264648438 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.619 1 64 63.5 64.5 3.3815 0 0 0 0.0035414 1 14158 14158 76.416 42.971 1 28000 2593 17671 17681 32458 32458 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_1 2 649.805419921875 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.808 1 64.19 63.69 64.69 3.3815 0 0 0 0.53105 1 14214 14214 11.518 6.989 1 28001 2593 17671 17681 32459 32459 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8032836914062 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.247 1 63.52 63.02 64.02 3.2731 0 0 0 0.29769 1 14084 14084 68.484 41.261 1 28002 2593 17671 17681 32460 32460 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8046875 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.393 1 63.659 63.159 64.159 3.2654 0 0 0 2.091E-300 1 14128 14128 205.73 123.2 1 28003 2593 17671 17681 32461 32461 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8043212890625 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.511 1 63.777 63.277 64.277 3.2654 0 0 0 7.060699999999999E-212 1 14165 14165 180.74 98.208 1 28004 2593 17671 17681 32462 32462 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8042602539062 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.634 1 63.899 63.399 64.399 3.2654 0 0 0 2.5944000000000002E-161 1 14201 14201 168.9 104.94 1 28005 2593 17671 17681 32463 32463 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8045043945312 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.758 1 64.024 63.524 64.524 3.2654 0 0 0 1.852E-07 1 14237 14237 88.576 53.644 1 28006 2593 17671 17681 32464 32464 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8038330078125 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.88 1 64.145 63.645 64.645 3.2654 0 0 0 2.5605E-12 1 14271 14271 93.448 51.493 1 28007 2593 17671 17681 32465 32465 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8043212890625 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 61.004 1 64.27 63.77 64.77 3.2654 0 0 0 0.53105 1 14308 14308 25.997 16.453 1 28008 2593 17671 17681 32466 32466 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8045654296875 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 61.133 1 64.399 63.899 64.899 3.2654 0 0 0 0.53105 1 14348 14348 14.957 9.2253 1 28009 2593 17671 17681 32467 32467 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_2 3 649.8041381835938 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 61.274 1 64.54 64.04 65.04 3.2654 0 0 0 0.53105 1 14392 14392 2.7352 1.0826 1 28010 2593 17671 17681 32468 32468 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.8045043945312 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.289 1 63.454 62.954 63.954 3.1651 0 0 0 0.53105 1 14147 14147 43.477 26.034 1 28011 2593 17671 17681 32469 32469 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.804443359375 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.422 1 63.587 63.087 64.087 3.1651 0 0 0 5.0234999999999997E-138 1 14187 14187 157.49 99.766 1 28012 2593 17671 17681 32470 32470 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.8046875 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.554 1 63.719 63.219 64.219 3.1651 0 0 0 2.5944000000000002E-161 1 14228 14228 168.9 119.35 1 28013 2593 17671 17681 32471 32471 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.8043823242188 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.676 1 63.841 63.341 64.341 3.1651 0 0 0 0 1 14264 14264 232.63 150.1 1 28014 2593 17671 17681 32472 32472 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.8038330078125 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.801 1 63.966 63.466 64.466 3.1651 0 0 0 3.7901999999999996E-28 1 14301 14301 106.37 71.433 1 28015 2593 17671 17681 32473 32473 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.8040771484375 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 60.928 1 64.093 63.593 64.593 3.1651 0 0 0 0.53105 1 14338 14338 53.798 36.355 1 28016 2593 17671 17681 32474 32474 -0.04301300058477864 NEIEDTFRQF 10 Unmodified _NEIEDTFRQF_ 0 0 0 ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F ENSG00000128524|ENST00000249289|ATP6V1F MSMS UPN47_class_I_Rep_3 4 649.803955078125 2 649.804217 1297.59388 NaN NaN NaN NaN NaN NaN NaN 61.062 1 64.227 63.727 64.727 3.1651 0 0 0 0.53105 1 14379 14379 39.923 22.48 1 28017 2593 17671 17681 32475 32475 -0.04301300058477864 NEILTVHY 8 Unmodified _NEILTVHY_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000214893.9_1_9:5823966-5832826:-|nuORF;ENST00000475005.1_1_9:5812814-5833063:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MSMS UPN46_class_I_Rep_3 1 494.7585754394531 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 53.55 1 53.55 53.05 54.05 0 0 0 0 0.0053537 1 11532 11532 58.679 8.7458 1 28018 1432 17672 17682 32476 32476 0.008294810348502324 NEIRHYWGSH 10 Unmodified _NEIRHYWGSH_ 0 0 0 REV__nc|ENSG00000166323|Q8NCR3-2|MFI REV__nc|ENSG00000166323|Q8NCR3-2|MFI MSMS UPN47_class_I_Rep_3 4 649.8042602539062 2 649.804885 1297.59522 NaN NaN NaN NaN NaN NaN NaN 61.422 1 64.588 64.088 65.088 3.1665 0 0 0 0.53105 1 14488 14488 7.609 0.97858 1 + 28019 20168 17673 17683 32477 32477 -0.04167621179044545 NEISKAWI 8 Unmodified _NEISKAWI_ 0 0 0 REV__Tigger1_dup1996|chr2:241283774-241284875:+|2.1359858553373594|0.1437753611474622|3.89|151.0|18|2|sense REV__Tigger1_dup1996|chr2:241283774-241284875:+|2.1359858553373594|0.1437753611474622|3.89|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.7613220214844 2 480.761092 959.507631 0.0635 3.0528E-05 -0.15113 -7.2656E-05 -0.087626 -4.2127E-05 480.7610609916823 53.768 1.3131 57.295 56.782 58.095 3.5278 159 74 4 0 0 0 0.82752 2 12001 12001;12044 43.858 2.1979 1 715870 + 28020 32331 17674 17684 32478;32479 32478 0.026257848974637454 NEISKAWI 8 Unmodified _NEISKAWI_ 0 0 0 REV__Tigger1_dup1996|chr2:241283774-241284875:+|2.1359858553373594|0.1437753611474622|3.89|151.0|18|2|sense REV__Tigger1_dup1996|chr2:241283774-241284875:+|2.1359858553373594|0.1437753611474622|3.89|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.760986328125 2 480.761092 959.507631 0.25634 0.00012324 -0.43439 -0.00020884 -0.17805 -8.5598E-05 480.7609292521821 54.005 1.2753 57.323 56.952 58.227 3.3187 168 70 4 0 0 0 0.82752 1 12106 12106 17.113 17.113 1 673950 + 28021 32331 17674 17684 32480 32480 0.026257848974637454 NEISKAWI 8 Unmodified _NEISKAWI_ 0 0 0 REV__Tigger1_dup1996|chr2:241283774-241284875:+|2.1359858553373594|0.1437753611474622|3.89|151.0|18|2|sense REV__Tigger1_dup1996|chr2:241283774-241284875:+|2.1359858553373594|0.1437753611474622|3.89|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.7613830566406 2 480.761092 959.507631 0.10943 5.2609E-05 -0.18555 -8.9207E-05 -0.076125 -3.6598E-05 480.76098467489265 54.131 1.0203 57.316 56.996 58.017 3.1856 170 62 4 0 0 0 0.82752 2 12185 12185;12225 43.858 0 1 857500 + 28022 32331 17674 17684 32481;32482 32481 0.026257848974637454 NEISWEWDP 9 Unmodified _NEISWEWDP_ 0 0 0 nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260-2|RELCH MULTI-MSMS UPN47_class_I_Rep_2 3 588.253173828125 2 588.253828 1174.4931 0.40372 0.00023749 -0.15033 -8.8433E-05 0.25339 0.00014906 588.2536296864454 69.556 0.93272 72.832 72.515 73.448 3.2761 163 77 3 0 0 0 0.48846 1 17055 17055 1.8442 0 1 315900 28023 16688 17675 17685 32483 32483 -0.08716332041331043 NEIVDEPVSIP 11 Unmodified _NEIVDEPVSIP_ 0 0 0 REV__ENSG00000175105|ENST00000636215|ZNF654 REV__ENSG00000175105|ENST00000636215|ZNF654 MSMS UPN47_class_I_Rep_1 2 605.8670654296875 2 606.311343 1210.60813 NaN NaN NaN NaN NaN NaN NaN 107.73 1 111.4 110.9 111.9 3.6724 0 0 0 0.38417 1 26402 26402 5.2969 0.96765 1 + 28024 20544 17676 17686 32484 32484 0.011253523698314893 NEKALEAVF 9 Unmodified _NEKALEAVF_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENST00000565907.1_1_X:135961433-135961586:-|nuORF nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS UPN46_class_I_Rep_3 1 510.77178955078125 2 510.771657 1019.52876 0.2401 0.00012264 -0.18233 -9.3129E-05 0.057774 2.9509E-05 510.7715937082887 54.974 0.46728 54.974 54.707 55.174 0 108 54 3 0 0 0 0.038999 2 11937 11901;11937 53.404 13.971 1 412060 28025 3471 17677 17687 32485;32486 32486 0.01977750206322071 NEKDLRDHHA 10 Unmodified _NEKDLRDHHA_ 0 0 0 REV__L1PA8_dup6996|chr15:92038400-92040228:+|1.197895747904586|0.0356400462162686|5.07|151.0|30|2|sense REV__L1PA8_dup6996|chr15:92038400-92040228:+|1.197895747904586|0.0356400462162686|5.07|151.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 617.802978515625 2 617.7998 1233.58505 0.45644 0.00028199 2.3689 0.0014635 2.8253 0.0017455 617.8010901774045 75.285 0.14577 78.597 78.512 78.658 3.3127 11 9 2 0 0 0 0.56333 1 18591 18591 1.4819 0.28856 1 44368 + 28026 30248 17678 17688 32487 32487 -0.022402289042929624 NEKFLDKVY 9 Unmodified _NEKFLDKVY_ 0 0 0 REV__L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|50|1|sense REV__L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|50|1|sense MSMS UPN46_class_I_Rep_3 1 578.2879638671875 2 578.305864 1154.59717 NaN NaN NaN NaN NaN NaN NaN 68.823 1 68.823 68.323 69.323 0 0 0 0 0.38784 1 15735 15735 3.5965 0 1 + 28027 29556 17679 17689 32488 32488 0.02605994786199517 NEKHLLLN 8 Unmodified _NEKHLLLN_ 0 0 0 REV__ENST00000424989.1_1_1:37921396-37939753:-|nuORF REV__ENST00000424989.1_1_1:37921396-37939753:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.7806396484375 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 29.682 1 33.44 32.94 33.94 3.7578 0 0 0 0.40746 1 4750 4750 0.69038 0 1 + 28028 22258 17680 17690 32489 32489 0.05448876163097793 NEKSSHPSKN 10 Unmodified _NEKSSHPSKN_ 0 0 0 L1MA3_dup3670|chr6:111383178-111385402:+|1.6596872332865795|0.273833497538289|2.6|151.0|17|1|sense L1MA3_dup3670|chr6:111383178-111385402:+|1.6596872332865795|0.273833497538289|2.6|151.0|17|1|sense L1MA3_dup3670|chr6:111383178-111385402:+|1.6596872332865795|0.273833497538289|2.6|151.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 564.2738037109375 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 115.25 1 118.87 118.37 119.37 3.6282 0 0 0 0.53105 1 28031 28031 1.1933 0.23107 1 28029 9535 17681 17691 32490 32490 -0.021507225441837363 NEKVNFHVE 9 Unmodified _NEKVNFHVE_ 0 0 0 nc|ENSG00000164463|Q8IUR6-2|CREBRF;ENST00000520464.1_1_5:172507634-172535847:+|nuORF;ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF nc|ENSG00000164463|Q8IUR6-2|CREBRF nc|ENSG00000164463|Q8IUR6-2|CREBRF MSMS UPN47_class_I_Rep_2 3 558.2763671875 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 34.766 1 38.191 37.691 38.691 3.4253 0 0 0 0.39598 1 6330 6330 1.6526 0.45928 1 28030 4113 17682 17692 32491 32491 -0.01196633050494711 NELELHESIL 10 Unmodified _NELELHESIL_ 0 0 0 L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|3|1|sense L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|3|1|sense L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 598.8129272460938 2 598.81151 1195.60847 0.46371 0.00027767 -0.27251 -0.00016318 0.1912 0.00011449 598.8114485363848 68.968 0.21713 72.422 72.329 72.546 3.4548 24 17 2 0 0 0 0.54822 1 15972 15972 5.7319 0 1 215950 28031 12778 17683 17693 32492 32492 0.01848772089670092 NELFGCFY 8 Unmodified _NELFGCFY_ 0 0 0 REV__L1ME3_dup4135|chr8:28179894-28180716:-|1.208215524892102|0.0887197086191017|3.77|151.0|32|1|anti-sense REV__L1ME3_dup4135|chr8:28179894-28180716:-|1.208215524892102|0.0887197086191017|3.77|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_2 3 496.7124938964844 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 54.382 1 57.701 57.201 58.201 3.3187 0 0 0 0.40404 1 12290 12290 5.2307 0.47466 1 + 28032 27952 17684 17694 32493 32493 -0.0850952565397165 NELILLLY 8 Unmodified _NELILLLY_ 0 0 0 REV__L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|127|2|anti-sense REV__L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|127|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 495.2975158691406 2 495.797143 989.579734 0.23448 0.00011625 3.0804 0.0015273 3.3149 0.0016435 495.7987533277597 53.547 0.12445 53.547 53.441 53.565 0 15 11 2 0 0 0 0.72333 1 11500 11500 5.2307 0 1 327510 + 28033 26774 17685 17695 32494 32494 0.08452699251188278 NELLEPNSF 9 Unmodified _NELLEPNSF_ 0 0 0 nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1 nc|ENSG00000120690|P32519-2|ELF1 nc|ENSG00000120690|P32519-2|ELF1 MULTI-MSMS UPN46_class_I_Rep_3 1 531.7594604492188 2 531.758746 1061.50294 0.27981 0.00014879 0.06708 3.567E-05 0.34689 0.00018446 531.7587499954327 66.653 0.36176 66.653 66.422 66.783 0 63 39 2 0 0 0 0.20317 2 15129 15094;15129 20.415 4.8695 1 185210 28034 2334 17686 17696 32495;32496 32496 -0.025351440359372646 NELLNLVRL 9 Unmodified _NELLNLVRL_ 0 0 0 REV__ENSG00000155530|ENST00000285928|LRGUK REV__ENSG00000155530|ENST00000285928|LRGUK MULTI-MSMS UPN48_class_I_Rep_2 6 542.3291625976562 2 542.329673 1082.64479 0.57901 0.00031401 0.070279 3.8114E-05 0.64929 0.00035213 542.3295156465063 57.979 0.39377 61.493 61.321 61.715 3.5142 42 24 3 0 0 0 0.48846 1 12656 12656 1.8442 0 1 361610 + 28035 19768 17687 17697 32497 32497 0.106776937770519 NELMVEGYVT 10 Unmodified _NELMVEGYVT_ 0 0 0 REV__ENST00000361362.6_1_5:178322903-178343648:+|nuORF REV__ENST00000361362.6_1_5:178322903-178343648:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 577.2689819335938 2 577.773539 1153.53253 0.49363 0.00028521 -1.1194 -0.00064678 -0.62579 -0.00036157 577.772491358562 51.222 2.6532 54.561 52.651 55.304 3.3386 160 76 3 0 0 0 0.52562 1 11268 11268 8.7454 0 1 439510 + 28036 21902 17688 17698 32498 32498 -0.03809948082130177 NELNGRVR 8 Unmodified _NELNGRVR_ 0 0 0 REV__POU5F1|p.N239K|1|0.44|ENSG00000204531|chr6:31165227-31165227|G/T|missense_variant REV__POU5F1|p.N239K|1|0.44|ENSG00000204531|chr6:31165227-31165227|G/T|missense_variant MSMS UPN47_class_I_Rep_2 3 479.2654113769531 2 479.264865 956.515176 NaN NaN NaN NaN NaN NaN NaN 58.13 1 61.421 60.921 61.921 3.2912 0 0 0 0.40472 1 13433 13433 4.3292 0 1 + 28037 21198 17689 17699 32499 32499 0.035179372177594814 NELPFQVQ 8 Unmodified _NELPFQVQ_ 0 0 0 ENST00000356554.7_1_1:118070855-118071107:+|nuORF ENST00000356554.7_1_1:118070855-118071107:+|nuORF ENST00000356554.7_1_1:118070855-118071107:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 487.7505798339844 2 487.750724 973.486896 0.078005 3.8047E-05 -0.16475 -8.0359E-05 -0.086749 -4.2312E-05 487.75068332558135 53.691 0.79467 57.219 56.782 57.577 3.5278 86 51 2 0 0 0 0.82752 1 12030 12030 14.838 0.93222 1 98609 28038 6289 17690 17700 32500 32500 -0.0009080548218207696 NELPGLKW 8 Unmodified _NELPGLKW_ 0 0 0 nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2652282714844 2 478.763635 955.512717 0.12279 5.8788E-05 -0.46892 -0.0002245 -0.34613 -0.00016572 478.76330527109525 57.799 0.45592 61.236 60.966 61.421 3.437 41 29 2 0 0 0 0.82752 3 13261 13261;13302;13326 24.021 8.1734 1 84904 28039 853 17691 17701 32501;32502;32503 32501 0.033180887601020004 NELPGLKW 8 Unmodified _NELPGLKW_ 0 0 0 nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 MSMS UPN47_class_I_Rep_2 3 478.76348876953125 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 57.997 1 61.288 60.788 61.788 3.2912 0 0 0 0.38444 1 13393 13393 13.906 0.86358 1 28040 853 17691 17701 32504 32504 0.033180887601020004 NELPGLKW 8 Unmodified _NELPGLKW_ 0 0 0 nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 nc|ENSG00000037474|Q08J23-3|NSUN2 MSMS UPN47_class_I_Rep_3 4 478.763671875 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 58.14 1 61.308 60.808 61.808 3.1681 0 0 0 0.38444 1 13487 13487 13.906 5.9959 1 28041 853 17691 17701 32505 32505 0.033180887601020004 NELQYRNNL 9 Unmodified _NELQYRNNL_ 0 0 0 REV__L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|47|2|sense REV__L1MC4_dup14831|chrX:155107908-155110629:-|2.1462139090114043|0.1786548779870777|3.59|151.0|47|2|sense MSMS UPN48_class_I_Rep_2 6 582.291259765625 2 582.293819 1162.57309 NaN NaN NaN NaN NaN NaN NaN 72.613 1 76.177 75.677 76.677 3.5645 0 0 0 0.39518 1 17005 17005 1.8442 0.36234 1 + 28042 26816 17692 17702 32506 32506 -0.0016984564747417608 NELSVSGLPY 10 Unmodified _NELSVSGLPY_ 0 0 0 REV__MLT2B4_dup1051|chr4:1994954-1995338:+|1.065868893862579|0.3336794370988962|1.68|151.0|2|1|sense REV__MLT2B4_dup1051|chr4:1994954-1995338:+|1.065868893862579|0.3336794370988962|1.68|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.2755126953125 2 539.774396 1077.53424 0.42594 0.00022991 -0.37385 -0.00020179 0.052089 2.8116E-05 539.7742557792502 69.956 0.39775 73.161 72.957 73.355 3.2044 44 30 2 0 0 0 0.53004 1 17114 17114 8.1555 0 1 63996 + 28043 31824 17693 17703 32507 32507 -0.0014257100183385774 NELVLRPR 8 Unmodified _NELVLRPR_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS UPN47_class_I_Rep_3 4 499.7335510253906 2 498.801083 995.587613 -0.34768 -0.00017342 0.30797 0.00015362 -0.03971 -1.9808E-05 498.8012785102133 33.559 0.39706 36.833 36.592 36.989 3.2748 35 27 2 0 0 0 0.82752 1 6010 6010 2.3027 0 1 41869 28044 4161 17694 17704 32508 32508 0.0896427129133599 NELVSTHGY 9 Unmodified _NELVSTHGY_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 510.24267578125 2 510.243264 1018.47197 0.24564 0.00012534 0.18138 9.2547E-05 0.42702 0.00021788 510.24336707147853 38.547 0.42203 38.547 38.295 38.717 0 69 42 2 0 0 0 0.081756 3 7335 7296;7335;7349 38.176 21.063 1 150690 28045 1732 17695 17705 32509;32510;32511 32510 -0.03652297350186018 NELVSTHGY 9 Unmodified _NELVSTHGY_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 510.7455139160156 2 510.243264 1018.47197 -0.19556 -9.9784E-05 -0.69543 -0.00035484 -0.89099 -0.00045462 510.24275809776 34.275 0.41753 37.961 37.715 38.132 3.6859 42 29 2 0 0 0 0.20317 2 6146 6098;6146 20.415 7.3721 1 93730 28046 1732 17695 17705 32512;32513 32513 -0.03652297350186018 NELVSTHGY 9 Unmodified _NELVSTHGY_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 510.2425842285156 2 510.243264 1018.47197 -0.26226 -0.00013382 -0.94437 -0.00048186 -1.2066 -0.00061567 510.2426802180372 34.453 0.48014 37.878 37.632 38.112 3.4253 47 33 2 0 0 0 0.26468 1 6253 6253 16.149 9.4259 1 91282 28047 1732 17695 17705 32514 32514 -0.03652297350186018 NELVSTHGY 9 Unmodified _NELVSTHGY_ 0 0 0 ENST00000586212.1_1_19:3532513-3533660:+|nuORF;nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENST00000586212.1_1_19:3532513-3533660:+|nuORF ENST00000586212.1_1_19:3532513-3533660:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 510.24273681640625 2 510.243264 1018.47197 -0.2944 -0.00015021 -0.86213 -0.00043989 -1.1565 -0.00059011 510.2427849915889 34.679 0.57304 37.943 37.688 38.261 3.2639 56 44 2 0 0 0 0.279 2 6342 6303;6342 15.248 5.8654 1 72999 28048 1732 17695 17705 32515;32516 32516 -0.03652297350186018 NELWPITRRIW 11 Unmodified _NELWPITRRIW_ 0 0 0 REV__nc|ENSG00000072110|P12814-2|ACTN1 REV__nc|ENSG00000072110|P12814-2|ACTN1 MULTI-SECPEP UPN46_class_I_Rep_3 1 495.2432861328125 3 495.277132 1482.80957 0.28824 0.00014276 -0.082306 -4.0764E-05 0.20593 0.00010199 495.27606930111796 42.856 0.079597 42.856 42.799 42.878 0 10 8 2 0 0 0 22.551 1 8507 8507 0.40827 0 1 77785 + 28049 17821 17696 17706 32517 32517 0.0874750591681277 NELWRQQY 8 Unmodified _NELWRQQY_ 0 0 0 REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|290|2|anti-sense REV__L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|290|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 568.312255859375 2 568.777805 1135.54106 0.37459 0.00021306 -1.6993 -0.00096654 -1.3247 -0.00075348 568.7772088519561 65.383 0.29266 68.639 68.435 68.728 3.2556 25 21 2 0 0 0 0.72333 1 15605 15605 5.2307 0.90143 1 71012 + 28050 29577 17697 17707 32518 32518 -0.02129213330613311 NELYMTLH 8 Unmodified _NELYMTLH_ 0 0 0 REV__MERX_dup193|chr7:130520449-130521122:+|1.849799944136041|0.0678337748665423|4.77|150.0|14|2|sense REV__MERX_dup193|chr7:130520449-130521122:+|1.849799944136041|0.0678337748665423|4.77|150.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 510.7443542480469 2 510.744585 1019.47462 NaN NaN NaN NaN NaN NaN NaN 34.769 1 38.033 37.533 38.533 3.2639 0 0 0 0.40157 1 6360 6360 7.2892 0.56607 1 + 28051 31579 17698 17708 32519 32519 -0.03434165216867768 NENDIITHF 9 Unmodified _NENDIITHF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MULTI-MSMS UPN47_class_I_Rep_1 2 551.76123046875 2 551.76182 1101.50909 0.27637 0.00015249 -0.13697 -7.5577E-05 0.13939 7.6911E-05 551.7615938455424 50.36 0.51501 53.988 53.693 54.208 3.6285 36 23 2 0 0 0 0.12096 2 11010 11010;11027 29.841 19.017 1 66559 28052 2006 17699 17709 32520;32521 32520 -0.03760625804443407 NENDIITHF 9 Unmodified _NENDIITHF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MULTI-MSMS UPN47_class_I_Rep_2 3 552.263427734375 2 551.76182 1101.50909 0.45255 0.0002497 -0.3118 -0.00017204 0.14075 7.7663E-05 551.7613007537705 50.546 0.56242 53.889 53.642 54.204 3.3431 45 28 2 0 0 0 0.20317 2 11115 11115;11160 20.415 11.031 1 78198 28053 2006 17699 17709 32522;32523 32522 -0.03760625804443407 NENDIITHF 9 Unmodified _NENDIITHF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MULTI-MSMS UPN47_class_I_Rep_3 4 551.7620239257812 2 551.76182 1101.50909 0.51476 0.00028403 -0.36645 -0.00020219 0.14831 8.1834E-05 551.7613313738818 50.728 0.52594 53.945 53.679 54.205 3.2163 45 28 2 0 0 0 0.14216 3 11239 11213;11239;11277 26.268 5.8536 1 71223 28054 2006 17699 17709 32524;32525;32526 32525 -0.03760625804443407 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ NENDIRVM(1)F NENDIRVM(160)F 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN46_class_I_Rep_3 1 577.2691650390625 2 577.268955 1152.52336 0.43203 0.0002494 -0.074489 -4.3E-05 0.35754 0.0002064 577.2689051088012 52.736 0.82476 52.736 52.435 53.259 0 254 90 4 0 0 0 3.8699E-05 6 11261 11229;11261;11295;11330;11367;11409 165.72 121.86 1 2933000 28055 898 17700 17710 32527;32528;32529;32530;32531;32532 32528 18 -0.04680296647779869 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ NENDIRVM(1)F NENDIRVM(62)F 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MSMS UPN46_class_I_Rep_3 1 577.26904296875 2 577.268955 1152.52336 NaN NaN NaN NaN NaN NaN NaN 53.274 1 53.274 52.774 53.774 0 0 0 0 0.001059 1 11451 11451 61.602 30.965 1 28056 898 17700 17710 32533 32533 18 -0.04680296647779869 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ NENDIRVM(1)F NENDIRVM(74)F 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_1 2 577.268798828125 2 577.268955 1152.52336 0.15993 9.2321E-05 0.47495 0.00027418 0.63488 0.0003665 577.269293424459 47.693 1.0778 51.388 51.111 52.189 3.6951 198 79 4 0 0 0 0.0065234 5 10162 10162;10199;10236;10276;10325 143.91 100.68 1 1227400 28057 898 17700 17710 32534;32535;32536;32537;32538 32534 18 -0.04680296647779869 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ NENDIRVM(1)F NENDIRVM(150)F 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_2 3 577.2693481445312 2 577.268955 1152.52336 0.34672 0.00020015 0.27014 0.00015594 0.61686 0.0003561 577.2691212147895 48.049 1.1764 51.398 51.106 52.282 3.3492 183 73 4 0 0 0 0.0010613 4 10326 10288;10326;10366;10409 152.89 109.03 1 1095100 28058 898 17700 17710 32539;32540;32541;32542 32540 18 -0.04680296647779869 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ NENDIRVM(1)F NENDIRVM(150)F 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_3 4 577.2693481445312 2 577.268955 1152.52336 0.38813 0.00022406 0.064416 3.7185E-05 0.45255 0.00026124 577.2690171992365 48.128 1.4459 51.369 51.047 52.493 3.2405 205 90 4 0 0 0 0.0010613 5 10435 10361;10398;10435;10481;10530 152.89 109.03 1 1212400 28059 898 17700 17710 32543;32544;32545;32546;32547 32545 18 -0.04680296647779869 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 577.268955 1152.52336 0.20222 0.00011674 -0.38043 -0.00021961 -0.17821 -0.00010287 577.2687469285098 49.332 0.33897 52.991 52.692 53.03 3.6592 0.0033932 -0.00035075 NaN 165.72 33 24 2 NaN NaN NaN NaN 0 NaN NaN 0 89439 28060 898 17700 17710 18 -0.04680296647779869 NENDIRVMF 9 Oxidation (M) _NENDIRVM(Oxidation (M))F_ 0 0 1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 577.268955 1152.52336 0.4844 0.00027963 0.046014 2.6562E-05 0.53041 0.00030619 577.2689102810081 50.011 0.45511 53.237 52.99 53.445 3.2262 0.2489 0.00014159 NaN 165.72 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 81366 28061 898 17700 17710 18 -0.04680296647779869 NENDIRVMF 9 Unmodified _NENDIRVMF_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_1 2 569.2698364257812 2 569.271498 1136.52844 0.32633 0.00018577 0.20522 0.00011683 0.53155 0.0003026 569.2715701707662 54.989 0.55096 58.49 58.273 58.824 3.5014 44 34 2 0 0 0 0.41587 2 12434 12425;12434 7.1017 4.1065 1 80592 28062 898 17700 17711 32548;32549 32549 -0.03435992785171038 NENDIRVMF 9 Unmodified _NENDIRVMF_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN47_class_I_Rep_3 4 569.271728515625 2 569.271498 1136.52844 0.42411 0.00024144 0.99503 0.00056644 1.4191 0.00080788 569.2725494985539 55.462 0.27954 58.64 58.462 58.742 3.1779 24 15 2 0 0 0 0.47493 1 12692 12692 3.2813 0.78282 1 55282 28063 898 17700 17711 32550 32550 -0.03435992785171038 NENDIRVMF 9 Unmodified _NENDIRVMF_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;ENSG00000048740.18,CELF2,chr10,+,I11.1,11257873,11266597|56|18.2|1|intron nc|ENSG00000048740|O95319-5|CELF2 nc|ENSG00000048740|O95319-5|CELF2 MSMS UPN47_class_I_Rep_3 4 569.2713012695312 2 569.271498 1136.52844 NaN NaN NaN NaN NaN NaN NaN 55.276 1 58.454 57.954 58.954 3.1779 0 0 0 0.3377 1 12619 12619 8.7454 2.5396 1 28064 898 17700 17711 32551 32551 -0.03435992785171038 NENENLIVY 9 Unmodified _NENENLIVY_ 0 0 0 REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 554.2695922851562 2 554.269478 1106.5244 0.45414 0.00025171 0.020912 1.1591E-05 0.47505 0.00026331 554.269437328429 74.492 0.35872 77.738 77.472 77.831 3.2464 48 36 2 0 0 0 0.42249 1 18405 18405 6.7232 0.99131 1 105720 + 28065 20678 17701 17712 32552 32552 -0.024597590072289677 NENLLVLRL 9 Unmodified _NENLLVLRL_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.3298950195312 2 542.329673 1082.64479 0.51182 0.00027758 0.20509 0.00011123 0.71691 0.0003888 542.3296627730242 57.909 0.2525 61.401 61.302 61.555 3.4922 31 16 3 0 0 0 0.32682 2 12587 12587;12624 12.241 0 1 416840 28066 15780 17702 17713 32553;32554 32553 0.10677693777029162 NENLLVLRL 9 Unmodified _NENLLVLRL_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.3294067382812 2 542.329673 1082.64479 0.51845 0.00028117 0.072562 3.9352E-05 0.59101 0.00032052 542.3296945735282 58.183 0.54983 61.67 61.565 62.115 3.487 45 31 2 0 0 0 0.30034 1 12726 12726 13.906 0 1 390830 28067 15780 17702 17713 32555 32555 0.10677693777029162 NENLLVLRL 9 Unmodified _NENLLVLRL_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 542.3290405273438 2 542.329673 1082.64479 0.44638 0.00024208 -0.17563 -9.525E-05 0.27075 0.00014683 542.3295308013675 57.532 0.14402 61.064 61.017 61.161 3.5317 25 10 3 0 0 0 0.32682 1 12381 12381 12.241 0 1 267130 28068 15780 17702 17713 32556 32556 0.10677693777029162 NENLLVLRL 9 Unmodified _NENLLVLRL_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 542.3298950195312 2 542.329673 1082.64479 0.45566 0.00024712 0.072038 3.9069E-05 0.52769 0.00028618 542.3296140242747 57.904 0.88599 61.436 61.15 62.036 3.5317 112 60 2 0 0 0 0.37599 2 12545 12421;12545 9.3831 0 1 670670 28069 15780 17702 17713 32557;32558 32558 0.10677693777029162 NENLLVLRL 9 Unmodified _NENLLVLRL_ 0 0 0 MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MER11A_dup129|chr2:202732972-202734099:-|2.186587853324138|0.0243374660269197|6.49|151.0|13|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 542.329673 1082.64479 0.5815 0.00031537 -0.09341 -5.0659E-05 0.4881 0.00026471 542.3294163028722 57.743 0.17311 61.257 61.135 61.308 3.5142 0.085882 -5.7001E-05 NaN 12.241 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 126330 28070 15780 17702 17713 0.10677693777029162 NENLVERF 8 Unmodified _NENLVERF_ 0 0 0 ENST00000491447.1_1_2:10262886-10264978:+|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000171848|P31350-2|RRM2 ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENST00000491447.1_1_2:10262886-10264978:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 510.7591247558594 2 510.759081 1019.50361 0.2742 0.00014005 -0.26818 -0.00013698 0.0060189 3.0742E-06 510.7589471630493 48.214 0.41633 48.214 47.951 48.367 0 53 42 2 0 0 0 0.82752 1 10008 10008 61.09 11.157 1 202380 28071 894 17703 17714 32559 32559 -0.005363045962326396 NENPLRALY 9 Unmodified _NENPLRALY_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS UPN47_class_I_Rep_1 2 545.2880249023438 2 545.288005 1088.56146 0.34357 0.00018735 -0.48487 -0.00026439 -0.1413 -7.7047E-05 545.287854543579 52.39 0.99897 55.948 55.463 56.462 3.5585 174 77 3 0 0 0 0.048662 2 11564 11564;11603 49.554 25.534 1 516430 28072 4888 17704 17715 32560;32561 32560 0.020719573291898996 NENPLRALY 9 Unmodified _NENPLRALY_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS UPN47_class_I_Rep_2 3 545.2879028320312 2 545.288005 1088.56146 0.4861 0.00026506 -0.44842 -0.00024452 0.03768 2.0546E-05 545.2878508935715 52.621 1.0905 55.954 55.489 56.579 3.3332 152 86 2 0 0 0 0.0061372 2 11755 11678;11755 75.761 37.787 1 542180 28073 4888 17704 17715 32562;32563 32563 0.020719573291898996 NENPLRALY 9 Unmodified _NENPLRALY_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS UPN47_class_I_Rep_3 4 545.2881469726562 2 545.288005 1088.56146 0.48851 0.00026638 -0.55905 -0.00030484 -0.07054 -3.8465E-05 545.2877919613629 52.799 0.9774 55.994 55.625 56.602 3.1948 142 72 3 0 0 0 0.048662 2 11794 11794;11957 49.554 25.534 1 543090 28074 4888 17704 17715 32564;32565 32564 0.020719573291898996 NENSLFKSL 9 Unmodified _NENSLFKSL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN47_class_I_Rep_1 2 526.27392578125 2 526.274564 1050.53457 0.19768 0.00010403 -0.55465 -0.0002919 -0.35697 -0.00018787 526.2741193765729 50.83 0.57849 54.459 54.051 54.63 3.6285 46 24 2 0 0 0 0.12306 2 11125 11125;11171 29.437 6.7791 1 129180 28075 3215 17705 17716 32566;32567 32566 0.011328487180207958 NENSLFKSL 9 Unmodified _NENSLFKSL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN47_class_I_Rep_2 3 526.2745361328125 2 526.274564 1050.53457 0.16557 8.7134E-05 -0.33803 -0.0001779 -0.17246 -9.0762E-05 526.2743217559685 51.086 1.009 54.425 54.047 55.056 3.3386 90 52 2 0 0 0 0.12306 2 11264 11264;11314 29.437 6.898 1 193950 28076 3215 17705 17716 32568;32569 32568 0.011328487180207958 NENSLFKSL 9 Unmodified _NENSLFKSL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS UPN47_class_I_Rep_3 4 526.2744750976562 2 526.274564 1050.53457 0.4547 0.00023929 -0.88428 -0.00046538 -0.42959 -0.00022608 526.2741801708047 51.235 0.57689 54.451 54.153 54.729 3.2163 49 28 2 0 0 0 0.12306 2 11369 11369;11422 29.437 9.6457 1 155200 28077 3215 17705 17716 32570;32571 32570 0.011328487180207958 NEPLHYLDT 9 Unmodified _NEPLHYLDT_ 0 0 0 REV__nc|ENSG00000103995|O94986-2|CEP152 REV__nc|ENSG00000103995|O94986-2|CEP152 MULTI-SECPEP UPN47_class_I_Rep_2 3 550.7720336914062 2 551.264196 1100.51384 0.19123 0.00010542 -1.3091 -0.00072165 -1.1178 -0.00061623 551.2636546625218 44.954 0.62403 48.309 48.049 48.673 3.3556 54 35 2 0 0 0 0.118 1 9415 9415 10.074 0 1 147010 + 28078 18245 17706 17717 32572 32572 -0.03239741661673179 NEPNQSSVKK 10 Unmodified _NEPNQSSVKK_ 0 0 0 REV__HAL1b_dup338|chr1:246923767-246923935:+|1.1311139320655432|0.0161783394607614|6.13|151.0|3|2|sense REV__HAL1b_dup338|chr1:246923767-246923935:+|1.1311139320655432|0.0161783394607614|6.13|151.0|3|2|sense MSMS UPN48_class_I_Rep_2 6 565.7928466796875 2 565.793652 1129.57275 NaN NaN NaN NaN NaN NaN NaN 113.81 1 117.48 116.98 117.98 3.663 0 0 0 0.53105 1 27177 27177 1.1933 0.59184 1 + 28079 23452 17707 17718 32573 32573 0.013147346326604747 NEPSTKEL 8 Unmodified _NEPSTKEL_ 0 0 0 ENST00000480124.1_1_2:202501465-202501597:-|nuORF;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237 ENST00000480124.1_1_2:202501465-202501597:-|nuORF ENST00000480124.1_1_2:202501465-202501597:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 459.2322998046875 2 459.232364 916.450176 -0.20088 -9.225E-05 0.19151 8.7946E-05 -0.0093728 -4.3043E-06 459.23236214301585 45.052 1.2853 48.752 48.404 49.689 3.6999 157 76 3 0 0 0 0.82752 1 9532 9532 16.942 0 1 467140 28080 3710 17708 17719 32574 32574 -0.011391020987502998 NEPSTKEL 8 Unmodified _NEPSTKEL_ 0 0 0 ENST00000480124.1_1_2:202501465-202501597:-|nuORF;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237 ENST00000480124.1_1_2:202501465-202501597:-|nuORF ENST00000480124.1_1_2:202501465-202501597:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 459.2322082519531 2 459.232364 916.450176 -0.27478 -0.00012619 0.29201 0.0001341 0.017232 7.9136E-06 459.23238832626953 45.384 1.23 48.738 48.36 49.59 3.3534 168 75 3 0 0 0 0.82752 2 9715 9675;9715 30.225 0 1 433180 28081 3710 17708 17719 32575;32576 32576 -0.011391020987502998 NEPSTKEL 8 Unmodified _NEPSTKEL_ 0 0 0 ENST00000480124.1_1_2:202501465-202501597:-|nuORF;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237 ENST00000480124.1_1_2:202501465-202501597:-|nuORF ENST00000480124.1_1_2:202501465-202501597:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 459.232177734375 2 459.232364 916.450176 -0.33828 -0.00015535 0.35508 0.00016306 0.016802 7.7161E-06 459.2324440187096 45.414 1.2805 48.658 48.314 49.595 3.2441 162 77 3 0 0 0 0.82752 1 9771 9771 23.148 0 1 529500 28082 3710 17708 17719 32577 32577 -0.011391020987502998 NEQDLGIQY 9 Unmodified _NEQDLGIQY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS UPN46_class_I_Rep_3 1 540.2540893554688 2 540.253828 1078.4931 0.27779 0.00015008 0.24284 0.00013119 0.52062 0.00028127 540.2538670344783 56.284 0.51041 56.284 56.037 56.547 0 123 62 3 0 0 0 0.0055879 4 12289 12222;12256;12289;12295 84.522 24.448 1 664520 28083 879 17709 17720 32578;32579;32580;32581 32580 -0.04300332041339061 NEQDNLWPF 9 Unmodified _NEQDNLWPF_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS UPN47_class_I_Rep_1 2 581.7622680664062 2 581.76182 1161.50909 0.28394 0.00016518 0.22604 0.0001315 0.50998 0.00029669 581.7618303184215 51.963 0.46123 55.556 55.31 55.771 3.5932 42 31 2 0 0 0 0.47493 1 11567 11567 3.2813 0.28607 1 72471 + 28084 18958 17710 17721 32582 32582 -0.06520625804432711 NEQDNLWPF 9 Unmodified _NEQDNLWPF_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MSMS UPN47_class_I_Rep_2 3 581.7615966796875 2 581.76182 1161.50909 NaN NaN NaN NaN NaN NaN NaN 52.237 1 55.57 55.07 56.07 3.3332 0 0 0 0.3377 1 11639 11639 8.7454 0.58988 1 + 28085 18958 17710 17721 32583 32583 -0.06520625804432711 NEQDNLWPF 9 Unmodified _NEQDNLWPF_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MSMS UPN47_class_I_Rep_2 3 581.7621459960938 2 581.76182 1161.50909 NaN NaN NaN NaN NaN NaN NaN 52.406 1 55.739 55.239 56.239 3.3332 0 0 0 0.38916 1 11687 11687 3.2813 0.28607 1 + 28086 18958 17710 17721 32584 32584 -0.06520625804432711 NEQKCEEI 8 Unmodified _NEQKCEEI_ 0 0 0 REV__NIN|p.L1712Rfs*10|1|0.08|ENSG00000100503|chr14:50744295-50744296|-/C|frameshift_variant REV__NIN|p.L1712Rfs*10|1|0.08|ENSG00000100503|chr14:50744295-50744296|-/C|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 496.7205505371094 2 496.721307 991.42806 0.21706 0.00010782 -2.6353 -0.001309 -2.4182 -0.0012012 496.7201967778119 37.671 0.36576 37.671 37.54 37.906 0 46 34 2 0 0 0 0.82752 1 7154 7154 2.0598 0 1 151250 + 28087 18117 17711 17722 32585 32585 -0.0679964983884247 NEQYRKRKELK 11 Unmodified _NEQYRKRKELK_ 0 0 0 REV__Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|18|1|anti-sense REV__Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.95166015625 3 497.951196 1490.83176 0.3548 0.00017667 -0.35101 -0.00017478 0.0037887 1.8866E-06 497.95101281816784 21.087 0.61903 24.735 24.285 24.904 3.648 88 69 2 0 0 0 0.6724 1 1915 1915 1.2148 0 1 95095 + 28088 32684 17712 17723 32586 32586 0.10597685594620998 NERHIKPQ 8 Unmodified _NERHIKPQ_ 0 0 0 L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|6|1|sense L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|6|1|sense L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 511.2698059082031 2 511.280515 1020.54648 NaN NaN NaN NaN NaN NaN NaN 54.201 1 54.201 53.701 54.701 0 0 0 0 0.36705 1 11717 11717 18.135 1.1927 1 28089 11574 17713 17724 32587 32587 0.037025102518555286 NERLELEAY 9 Unmodified _NERLELEAY_ 0 0 0 ENSG00000166848|ENST00000300086|TERF2IP ENSG00000166848|ENST00000300086|TERF2IP ENSG00000166848|ENST00000300086|TERF2IP MSMS UPN46_class_I_Rep_3 1 568.7826538085938 2 568.782753 1135.55095 NaN NaN NaN NaN NaN NaN NaN 50.655 1 50.655 50.155 51.155 0 0 0 0 0.32573 1 10713 10713 9.3831 0 1 28090 4267 17714 17725 32588 32588 -0.011400701159118398 NERYLFLG 8 Unmodified _NERYLFLG_ 0 0 0 REV__ENST00000325404.2_1_3:181431262-181431475:+|nuORF REV__ENST00000325404.2_1_3:181431262-181431475:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 506.2668151855469 2 506.266542 1010.51853 0.24413 0.0001236 -0.35364 -0.00017904 -0.10951 -5.5442E-05 506.2661982599809 57.404 0.41424 60.695 60.441 60.855 3.2912 35 32 2 0 0 0 0.82752 1 13177 13177 7.9102 0 1 94931 + 28091 21759 17715 17726 32589 32589 0.013691872717458864 NERYLFLG 8 Unmodified _NERYLFLG_ 0 0 0 REV__ENST00000325404.2_1_3:181431262-181431475:+|nuORF REV__ENST00000325404.2_1_3:181431262-181431475:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 505.78759765625 2 506.266542 1010.51853 0.17506 8.8627E-05 -0.37557 -0.00019014 -0.20051 -0.00010151 506.2663419285617 57.42 0.56124 60.588 60.371 60.932 3.1681 62 46 2 0 0 0 0.72333 1 13325 13325 7.9102 0 1 85251 + 28092 21759 17715 17726 32590 32590 0.013691872717458864 NESHLLIYI 9 Unmodified _NESHLLIYI_ 0 0 0 L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|160|1|anti-sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|160|1|anti-sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|160|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.3009643554688 2 551.300581 1100.58661 NaN NaN NaN NaN NaN NaN NaN 71.973 1 71.973 71.473 72.473 0 0 0 0 0.37476 1 16610 16610 6.7232 1.4925 1 28093 13885 17716 17727 32591 32591 0.04034012131751297 NESHSQMFI 9 Unmodified _NESHSQMFI_ 0 0 0 REV__nc|ENSG00000141298|Q76I76|SSH2 REV__nc|ENSG00000141298|Q76I76|SSH2 MSMS UPN47_class_I_Rep_1 2 546.74462890625 2 546.742573 1091.47059 NaN NaN NaN NaN NaN NaN NaN 114.32 1 117.9 117.4 118.4 3.5809 0 0 0 0.38639 1 28244 28244 3.9444 1.3669 1 + 28094 19370 17717 17728 32592 32592 -0.07148254710591573 NESSVLHTL 9 Unmodified _NESSVLHTL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS UPN47_class_I_Rep_1 2 500.25872802734375 2 500.258914 998.503274 -0.22723 -0.00011367 0.21858 0.00010935 -0.0086466 -4.3255E-06 500.25902562275746 40.263 0.56562 43.93 43.693 44.258 3.6668 64 41 2 0 0 0 0.19147 2 7971 7971;8012 21.537 8.4945 1 101480 28095 5315 17718 17729 32593;32594 32593 0.003962756839086978 NESSVLHTL 9 Unmodified _NESSVLHTL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS UPN47_class_I_Rep_2 3 500.2586364746094 2 500.258914 998.503274 -0.17932 -8.9708E-05 -0.19767 -9.8886E-05 -0.37699 -0.00018859 500.2590035377056 40.628 0.38878 43.999 43.799 44.188 3.3712 37 27 2 0 0 0 0.1249 1 8114 8114 29.082 14.243 1 113210 28096 5315 17718 17729 32595 32595 0.003962756839086978 NESSVLHTL 9 Unmodified _NESSVLHTL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS UPN47_class_I_Rep_3 4 500.25933837890625 2 500.258914 998.503274 -0.21059 -0.00010535 0.5533 0.00027679 0.34271 0.00017144 500.2591975038608 40.798 0.65586 44.035 43.741 44.397 3.2372 70 44 3 0 0 0 0.17897 1 8241 8241 22.736 11.912 1 84535 28097 5315 17718 17729 32596 32596 0.003962756839086978 NESSVLHTL 9 Unmodified _NESSVLHTL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS UPN48_class_I_Rep_2 6 500.6034240722656 2 500.258914 998.503274 NaN NaN NaN NaN NaN NaN NaN 40.461 1 44.202 43.702 44.702 3.7413 0 0 0 0.38784 1 7285 7285 3.5965 1.5367 1 28098 5315 17718 17729 32597 32597 0.003962756839086978 NESTGLNIIGW 11 Unmodified _NESTGLNIIGW_ 0 0 0 REV__ENST00000533208.5_1_11:44089259-44098922:+|nuORF REV__ENST00000533208.5_1_11:44089259-44098922:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 602.3036499023438 2 602.303852 1202.59315 0.36857 0.00022199 0.19223 0.00011578 0.5608 0.00033777 602.3039314814088 65.757 0.82683 69.015 68.635 69.462 3.2586 123 50 4 0 0 0 0.67113 1 15645 15645 1.3295 1.3295 1 683380 + 28099 22870 17719 17730 32598 32598 -4.0947075376607245E-05 NETDILSQY 9 Unmodified _NETDILSQY_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;ENST00000532239.1_1_11:62365783-62365918:-|nuORF;ENST00000526844.1_1_11:62365783-62368922:-|nuORF ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MULTI-MSMS UPN46_class_I_Rep_3 1 541.7539672851562 2 541.753661 1081.49277 0.29605 0.00016039 -0.013699 -7.4216E-06 0.28235 0.00015297 541.7536569402862 61.474 0.38174 61.474 61.338 61.72 0 52 36 2 0 0 0 0.081756 1 13685 13685 38.176 6.9072 1 126570 28100 3542 17720 17731 32599 32599 -0.04471751761161613 NETGPLPHTLY 11 Unmodified _NETGPLPHTLY_ 0 0 0 L1MB2_dup8437|chr20:25027173-25028679:+|1.4382551531022612|0.2631436716067632|2.45|150.0|48|3|sense L1MB2_dup8437|chr20:25027173-25028679:+|1.4382551531022612|0.2631436716067632|2.45|150.0|48|3|sense L1MB2_dup8437|chr20:25027173-25028679:+|1.4382551531022612|0.2631436716067632|2.45|150.0|48|3|sense MSMS UPN47_class_I_Rep_2 3 621.3141479492188 2 621.311677 1240.6088 NaN NaN NaN NaN NaN NaN NaN 62.873 1 66.129 65.629 66.629 3.2558 0 0 0 0.34167 1 14878 14878 9.544 2.8208 1 28101 10307 17721 17732 32600 32600 -0.0018780819048060948 NEVCFKFH 8 Unmodified _NEVCFKFH_ 0 0 0 REV__ENSG00000119231|ENST00000323460|SENP5 REV__ENSG00000119231|ENST00000323460|SENP5 MSMS UPN46_class_I_Rep_3 1 512.2407836914062 2 512.23947 1022.46439 NaN NaN NaN NaN NaN NaN NaN 30.706 1 30.706 30.206 31.206 0 0 0 0 0.40643 1 5038 5038 2.0598 0 1 + 28102 18668 17722 17733 32601 32601 -0.045947281514600036 NEVDFQEY 8 Unmodified _NEVDFQEY_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS UPN46_class_I_Rep_3 1 522.2193603515625 2 522.219454 1042.42436 0.25413 0.00013271 -0.06102 -3.1866E-05 0.19311 0.00010085 522.219328985434 54.092 0.70391 54.092 53.766 54.47 0 122 72 2 0 0 0 0.82752 6 11652 11616;11652;11678;11689;11720;11737 107.1 57.167 1 634500 28103 5284 17723 17734 32602;32603;32604;32605;32606;32607 32603 -0.0951599634104241 NEVELLVM 8 Oxidation (M) _NEVELLVM(Oxidation (M))_ NEVELLVM(1) NEVELLVM(65) 0 0 1 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS UPN46_class_I_Rep_3 1 481.74664306640625 2 481.746793 961.479033 0.20659 9.9524E-05 -0.095861 -4.6181E-05 0.11073 5.3343E-05 481.7466077595685 64.14 0.52645 64.14 63.945 64.472 0 96 60 2 0 0 0 0.82752 2 14383 14383;14433 65.235 9.058 1 219610 28104 5112 17724 17735 32608;32609 32608 157 -0.003247007939648938 NEVISKLY 8 Unmodified _NEVISKLY_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8 nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN46_class_I_Rep_3 1 483.26947021484375 2 483.26875 964.522947 0.22793 0.00011015 -0.021276 -1.0282E-05 0.20666 9.9871E-05 483.26868612237877 48.738 0.66107 48.738 48.496 49.157 0 120 63 3 0 0 0 0.82752 2 10131 10131;10167 93.166 24.061 1 439800 28105 3728 17725 17736 32610;32611 32610 0.03926651694666816 NEVKNQIY 8 Unmodified _NEVKNQIY_ 0 0 0 nc|ENSG00000266302|A2RUR9-3|CCDC144A;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A nc|ENSG00000266302|A2RUR9-3|CCDC144A nc|ENSG00000266302|A2RUR9-3|CCDC144A MULTI-MSMS UPN46_class_I_Rep_3 1 505.2506408691406 2 504.261456 1006.50836 0.081265 4.0979E-05 -0.47774 -0.00024091 -0.39647 -0.00019993 504.261088806231 31.277 0.10365 31.277 31.234 31.338 0 11 6 3 0 0 0 0.82752 1 5219 5219 10.824 1.4408 1 40753 28106 4457 17726 17737 32612 32612 0.005365795465195333 NEVLTKTY 8 Unmodified _NEVLTKTY_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000550917.1_1_12:32879649-32880297:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS UPN46_class_I_Rep_3 1 484.25848388671875 2 484.258382 966.502212 0.11173 5.4107E-05 -0.12276 -5.945E-05 -0.011033 -5.3426E-06 484.2582057836698 34.235 0.79156 34.235 33.893 34.684 0 124 56 3 0 0 0 0.82752 4 6040 6040;6080;6118;6160 87.258 20.802 1 341510 28107 5181 17727 17738 32613;32614;32615;32616 32613 0.017620613150029385 NEVVTQQY 8 Unmodified _NEVVTQQY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS UPN46_class_I_Rep_3 1 490.7373046875 2 490.737814 979.461075 0.20661 0.00010139 0.3619 0.0001776 0.56851 0.00027899 490.7378835618187 37.73 0.39288 37.73 37.533 37.926 0 59 38 2 0 0 0 0.82752 1 7139 7139 63.227 23.27 1 111640 28108 1186 17728 17739 32617 32617 -0.029476997244614722 NEVVTREY 8 Unmodified _NEVVTREY_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENSG00000071082|ENST00000264258|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENSG00000071082|ENST00000264258|RPL31 MULTI-MSMS UPN46_class_I_Rep_3 1 505.25091552734375 2 505.251089 1008.48762 0.06606 3.3377E-05 -0.23878 -0.00012064 -0.17272 -8.7265E-05 505.25099410207497 30.506 1.2873 30.506 30.19 31.478 0 185 101 3 0 0 0 0.82752 6 4956 4916;4956;4998;5037;5080;5121 107.1 41.865 1 788210 28109 1083;6996 17729 17740 32618;32619;32620;32621;32622;32623 32619 -0.016280108331329757 NEWCWTNF 8 Unmodified _NEWCWTNF_ 0 0 0 REV__L1PA5_dup8074|chr11:14575266-14577139:-|2.177282415733678|0.1975064607823219|3.46|151.0|1|1|sense REV__L1PA5_dup8074|chr11:14575266-14577139:-|2.177282415733678|0.1975064607823219|3.46|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 550.2177734375 2 550.218734 1098.42292 NaN NaN NaN NaN NaN NaN NaN 30.449 1 34.194 33.694 34.694 3.7449 0 0 0 0.40643 1 4981 4981 2.0598 1.2661 1 + 28110 29798 17730 17741 32624 32624 -0.12235908910770377 NEWLGYTF 8 Unmodified _NEWLGYTF_ 0 0 0 REV__L1MB5_dup3800|chr9:5703606-5704215:-|1.062902531717513|0.0556194496400856|4.26|151.0|5|1|sense REV__L1MB5_dup3800|chr9:5703606-5704215:-|1.062902531717513|0.0556194496400856|4.26|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 515.2351684570312 2 515.23745 1028.46035 NaN NaN NaN NaN NaN NaN NaN 28.792 1 32.125 31.625 32.625 3.3337 0 0 0 0.40625 1 4564 4564 2.3027 0.24298 1 + 28111 26064 17731 17742 32625 32625 -0.05274494373520611 NEWWWKHF 8 Unmodified _NEWWWKHF_ 0 0 0 REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|63|1|sense REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|63|1|sense MSMS UPN48_class_I_Rep_2 6 616.7866821289062 2 616.785433 1231.55631 NaN NaN NaN NaN NaN NaN NaN 115.27 1 118.93 118.43 119.43 3.6616 0 0 0 0.40746 1 27586 27586 0.69038 0.088878 1 + 28112 29911 17732 17743 32626 32626 -0.05020301742774791 NFCHDGMLNF 10 Unmodified _NFCHDGMLNF_ 0 0 0 L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|175|1|anti-sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|175|1|anti-sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|175|1|anti-sense MSMS UPN48_class_I_Rep_3 7 599.2469482421875 2 599.244426 1196.4743 NaN NaN NaN NaN NaN NaN NaN 69.104 1 72.614 72.114 73.114 3.5094 0 0 0 0.53105 1 15894 15894 1.4819 0.15237 1 28113 9482 17733 17744 32627 32627 -0.11607908208384288 NFCVSKGTIN 10 Unmodified _NFCVSKGTIN_ 0 0 0 L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|37|2|sense L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|37|2|sense L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|37|2|sense MSMS UPN48_class_I_Rep_1 5 541.7667236328125 2 541.768591 1081.52263 NaN NaN NaN NaN NaN NaN NaN 25.24 1 28.807 28.307 29.307 3.5667 0 0 0 0.53105 1 2909 2909 1.3295 0.5359 1 28114 10414 17734 17745 32628 32628 -0.014870912968035555 NFDKGCERLK 10 Unmodified _NFDKGCERLK_ 0 0 0 REV__ENSG00000186230|ENST00000334181|ZNF749 REV__ENSG00000186230|ENST00000334181|ZNF749 MULTI-SECPEP UPN48_class_I_Rep_1 5 604.7685546875 2 605.305872 1208.59719 0.57161 0.000346 0.3843 0.00023262 0.95591 0.00057862 605.306148497666 61.862 0.44229 65.33 65.225 65.668 3.4678 55 39 2 0 0 0 0.84575 1 13796 13796 10.074 2.1638 1 102860 + 28115 20884 17735 17746 32629 32629 0.0012367151452963299 NFDKVQFVIV 10 Unmodified _NFDKVQFVIV_ 0 0 0 L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|72|2|anti-sense L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|72|2|anti-sense L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|72|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 604.7686157226562 2 604.837331 1207.66011 0.57517 0.00034788 -3.0112 -0.0018213 -2.436 -0.0014734 605.3371629031691 61.7 0.075539 65.168 65.141 65.217 3.4678 9 6 2 0 0 0 0.84575 1 13756 13756 10.074 2.1638 1 127870 28116 12510 17736 17747 32630 32630 0.06458560574219518 NFDPLMIGVAK 11 Unmodified _NFDPLMIGVAK_ 0 0 0 REV__L1PA7_dup5864|chr7:16159381-16162961:-|3.823535854610049|0.1911005985247736|4.32|151.0|29|1|sense REV__L1PA7_dup5864|chr7:16159381-16162961:-|3.823535854610049|0.1911005985247736|4.32|151.0|29|1|sense MSMS UPN48_class_I_Rep_2 6 602.82275390625 2 602.823366 1203.63218 NaN NaN NaN NaN NaN NaN NaN 103.06 1 106.77 106.27 107.27 3.7108 0 0 0 0.38417 1 24399 24399 5.2969 2.0156 1 + 28117 30139 17737 17748 32631 32631 0.03850914322470089 NFDPVQIEQE 10 Unmodified _NFDPVQIEQE_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MSMS UPN46_class_I_Rep_3 1 406.8581848144531 3 406.85942 1217.55643 NaN NaN NaN NaN NaN NaN NaN 16.903 1 16.903 16.403 17.403 0 0 0 0 0.53105 1 1246 1246 0.50596 0.047615 1 28118 3711 17738 17749 32632 32632 -0.04364391324088501 NFFFFFNF 8 Unmodified _NFFFFFNF_ 0 0 0 Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_2 3 565.2591552734375 2 565.260728 1128.5069 NaN NaN NaN NaN NaN NaN NaN 113.12 1 116.63 116.13 117.13 3.5171 0 0 0 0.40746 1 27500 27500 0.69038 0 1 28119 33406 17739 17750 32633 32633 -0.052210097515853704 NFFFFFNFL 9 Unmodified _NFFFFFNFL_ 0 0 0 Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_1 2 621.8037719726562 2 621.80276 1241.59097 NaN NaN NaN NaN NaN NaN NaN 54.975 1 58.476 57.976 58.976 3.5014 0 0 0 0.38478 1 12442 12442 4.3292 0.73274 1 28120 33406 17740 17751 32634 32634 -0.020164786546729374 NFFFFFNFL 9 Unmodified _NFFFFFNFL_ 0 0 0 Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_2 3 621.8043212890625 2 621.80276 1241.59097 NaN NaN NaN NaN NaN NaN NaN 55.205 1 58.515 58.015 59.015 3.3102 0 0 0 0.39518 1 12541 12541 1.8442 0.36234 1 28121 33406 17740 17751 32635 32635 -0.020164786546729374 NFFFLFFF 8 Unmodified _NFFFLFFF_ 0 0 0 HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|117|3|anti-sense;Tigger3b_dup84|chr1:51371215-51372129:+|1.953437650124572|0.0723921004130481|4.75|151.0|48|1|anti-sense;AluSx1_dup90936|chr16:23873047-23873400:+|1.356324635675553|0.0215145511172893|5.98|151.0|19|2|anti-sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|117|3|anti-sense HERVIP10FH-int_dup291|chr14:30966395-30968402:+|4.829635128168471|0.048466937355997|6.64|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7808227539062 2 564.781296 1127.54804 NaN NaN NaN NaN NaN NaN NaN 38.991 1 42.229 41.729 42.729 3.238 0 0 0 0.40746 1 7653 7653 0.69038 0 1 28122 8226 17741 17752 32636 32636 -0.010632487121029044 NFFFVIYDD 9 Unmodified _NFFFVIYDD_ 0 0 0 REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|127|1|anti-sense REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|127|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 590.7734985351562 2 590.27149 1178.52843 0.39491 0.0002331 0.63066 0.00037226 1.0256 0.00060536 590.7733671393157 55.52 0.22643 59.075 58.996 59.222 3.5554 14 12 2 0 0 0 0.46434 1 11785 11785 4.3292 0 1 108740 + 28123 30526 17742 17753 32637 32637 -0.053696695135158734 NFFMLRFCM 9 Unmodified _NFFMLRFCM_ 0 0 0 REV__ENST00000423531.3_1_3:195057665-195063210:-|nuORF REV__ENST00000423531.3_1_3:195057665-195063210:-|nuORF MSMS UPN48_class_I_Rep_1 5 604.7738037109375 2 604.774308 1207.53406 NaN NaN NaN NaN NaN NaN NaN 21.524 1 25.077 24.577 25.577 3.5533 0 0 0 0.4007 1 1977 1977 0.52476 0 1 + 28124 22253 17743 17754 32638 32638 -0.06140308798717342 NFFVLEKR 8 Unmodified _NFFVLEKR_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|8|1|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 526.7965087890625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 25.618 1 29.367 28.867 29.867 3.7495 0 0 0 0.40746 1 3541 3541 0.69038 0 1 + 28125 26317 17744 17755 32639 32639 0.05773753059793307 NFFVLLGK 8 Unmodified _NFFVLLGK_ 0 0 0 AluSq2_dup55499|chr19:16082227-16082519:+|1.9214590092420212|0.1058963633349657|4.18|151.0|13|1|anti-sense AluSq2_dup55499|chr19:16082227-16082519:+|1.9214590092420212|0.1058963633349657|4.18|151.0|13|1|anti-sense AluSq2_dup55499|chr19:16082227-16082519:+|1.9214590092420212|0.1058963633349657|4.18|151.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 469.2796630859375 2 469.278921 936.543289 0.15633 7.3361E-05 -0.30251 -0.00014196 -0.14618 -6.8599E-05 469.27869374909574 66.643 0.44047 70.094 69.792 70.232 3.4516 56 29 2 0 0 0 0.82752 1 15185 15185 21.747 0 1 797510 28126 267 17745 17756 32640 32640 0.07247867145144937 NFGIIRIIL 9 Unmodified _NFGIIRIIL_ 0 0 0 Tigger4a_dup2360|chr11:77613770-77613997:-|1.0597342965058694|0.2447693344541767|2.11|150.0|12|2|anti-sense Tigger4a_dup2360|chr11:77613770-77613997:-|1.0597342965058694|0.2447693344541767|2.11|150.0|12|2|anti-sense Tigger4a_dup2360|chr11:77613770-77613997:-|1.0597342965058694|0.2447693344541767|2.11|150.0|12|2|anti-sense MSMS UPN48_class_I_Rep_1 5 530.2429809570312 2 529.839677 1057.6648 NaN NaN NaN NaN NaN NaN NaN 25.035 1 28.602 28.102 29.102 3.5667 0 0 0 0.4007 1 2853 2853 0.52476 0 1 28127 33435 17746 17757 32641 32641 0.13827489507639257 NFGQIVFILS 10 Unmodified _NFGQIVFILS_ 0 0 0 Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|27|2|sense Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|27|2|sense Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 569.3165893554688 2 569.318774 1136.623 NaN NaN NaN NaN NaN NaN NaN 28.773 1 32.515 32.015 33.015 3.7424 0 0 0 0.53105 1 3958 3958 1.4819 0.68827 1 28128 33473 17747 17758 32642 32642 0.06014889028483594 NFHVFLCF 8 Unmodified _NFHVFLCF_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|188|2|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|188|2|anti-sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|188|2|anti-sense MSMS UPN46_class_I_Rep_3 1 513.74609375 2 513.746931 1025.47931 NaN NaN NaN NaN NaN NaN NaN 14.325 1 14.325 13.825 14.825 0 0 0 0 0.40738 1 605 605 0.79363 0 1 28129 15303 17748 17759 32643 32643 -0.03241236283474791 NFIFIKILFRF 11 Unmodified _NFIFIKILFRF_ 0 0 0 L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense L1MEc_dup4283|chr3:179407461-179408498:+|1.1127788911857253|0.0908294827805645|3.61|151.0|59|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.62774658203125 3 486.627102 1456.85948 0.25247 0.00012286 0.33926 0.00016509 0.59173 0.00028795 486.6271631480528 100.06 0.31422 103.82 103.68 104 3.7575 79 43 2 0 0 0 0.68081 1 23773 23773 0.45452 0.35968 1 236150 28130 13101 17749 17760 32644 32644 0.14932240592747803 NFIKKILLQI 10 Unmodified _NFIKKILLQI_ 0 0 0 L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|57|2|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|57|2|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|57|2|sense MSMS UPN47_class_I_Rep_1 2 615.7285766601562 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 117.87 1 121.47 120.97 121.97 3.6036 0 0 0 0.53105 1 29232 29232 0.40072 0 1 28131 14941 17750 17761 32645 32645 0.1854857629309663 NFIKYYIYLQV 11 Unmodified _NFIKYYIYLQV_ 0 0 0 REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|21|1|sense REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 488.6038818359375 3 488.602622 1462.78604 0.14645 7.1555E-05 2.1869 0.0010685 2.3333 0.0011401 488.6037194046504 109.67 0.17773 113.3 113.18 113.36 3.6322 31 22 2 0 0 0 0.67356 1 26648 26648 1.1098 0.6038 1 231560 + 28132 26115 17751 17762 32646 32646 0.07315647359632749 NFIKYYIYLQV 11 Unmodified _NFIKYYIYLQV_ 0 0 0 REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|21|1|sense REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|21|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 488.602622 1462.78604 0.14645 7.1555E-05 2.1869 0.0010685 2.3333 0.0011401 488.6037194046504 109.67 0.17773 113.3 113.18 113.36 3.6322 -0.01599 -0.0003868 NaN 1.1098 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 231560 + 28133 26115 17751 17762 0.07315647359632749 NFIKYYIYLQV 11 Unmodified _NFIKYYIYLQV_ 0 0 0 REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|21|1|sense REV__L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|21|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 488.602622 1462.78604 0.23743 0.00011601 2.5672 0.0012544 2.8047 0.0013704 488.60389541374235 109.66 0.15032 113.33 113.26 113.41 3.67 0.01599 0.00017075 NaN 1.1098 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 457740 + 28134 26115 17751 17762 0.07315647359632749 NFIRLSKV 8 Unmodified _NFIRLSKV_ 0 0 0 REV__Charlie15b_dup31|chr1:39375601-39376143:-|2.074124230307387|0.0276538542655993|6.23|151.0|21|1|anti-sense REV__Charlie15b_dup31|chr1:39375601-39376143:-|2.074124230307387|0.0276538542655993|6.23|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_2 6 488.7980651855469 2 488.800552 975.58655 NaN NaN NaN NaN NaN NaN NaN 59.919 1 63.406 62.906 63.906 3.4868 0 0 0 0.4044 1 13186 13186 4.756 0 1 + 28135 17289 17752 17763 32647 32647 0.0977805692241418 NFKILIKF 8 Unmodified _NFKILIKF_ 0 0 0 REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|86|3|anti-sense REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|86|3|anti-sense MSMS UPN48_class_I_Rep_3 7 511.8249206542969 2 511.823495 1021.63244 NaN NaN NaN NaN NaN NaN NaN 61.097 1 64.61 64.11 65.11 3.5129 0 0 0 0.40738 1 13474 13474 0.79363 0 1 + 28136 27867 17753 17764 32648 32648 0.12248702104670883 NFKSKPALPKH 11 Unmodified _NFKSKPALPKH_ 0 0 0 nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A MULTI-SECPEP UPN48_class_I_Rep_3 7 422.58148193359375 3 422.915423 1265.72444 0.11269 4.766E-05 1.7111 0.00072366 1.8238 0.00077132 422.91631267170476 100.3 0.097816 104.15 104.08 104.18 3.8537 20 13 2 0 0 0 22.551 1 23745 23745 2.2527 1.6259 1 66123 28137 1026 17754 17765 32649 32649 0.10220760451034039 NFKSKPALPKH 11 Unmodified _NFKSKPALPKH_ 0 0 0 nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.915423 1265.72444 0.11187 4.7311E-05 1.8572 0.00078544 1.9691 0.00083275 422.91624990203223 100.26 0.039032 104.05 104.02 104.05 3.7942 -0.050508 0.00014059 NaN 2.2527 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48799 28138 1026 17754 17765 0.10220760451034039 NFKVNQRRF 9 Unmodified _NFKVNQRRF_ 0 0 0 nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR;ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|4|intron;ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|1|intron;nc|ENSG00000151687|Q7Z5J8-4|ANKAR;ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|7|intron;ENSG00000151687.14,ANKAR,chr2,+,I16.1,189728822,189730494|60|4.14|1|intron;ENSG00000151687.14,ANKAR,chr2,+,I16.1,189728822,189730494|60|4.14|11|intron;nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-2|ANKAR nc|ENSG00000151687|Q7Z5J8-2|ANKAR MULTI-SECPEP UPN48_class_I_Rep_1 5 604.7685546875 2 604.835988 1207.65742 0.57768 0.0003494 -1.2958 -0.00078374 -0.71811 -0.00043434 604.8354080286613 61.636 0.37021 65.103 64.78 65.151 3.4678 37 33 2 0 0 0 0.11959 1 13720 13720 7.9102 0.62092 1 127040 28139 3598 17755 17766 32650 32650 0.06190149959934388 NFKVNQRRF 9 Unmodified _NFKVNQRRF_ 0 0 0 nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR;ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|4|intron;ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|1|intron;nc|ENSG00000151687|Q7Z5J8-4|ANKAR;ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|7|intron;ENSG00000151687.14,ANKAR,chr2,+,I16.1,189728822,189730494|60|4.14|1|intron;ENSG00000151687.14,ANKAR,chr2,+,I16.1,189728822,189730494|60|4.14|11|intron;nc|ENSG00000151687|Q7Z5J8-3|ANKAR nc|ENSG00000151687|Q7Z5J8-2|ANKAR nc|ENSG00000151687|Q7Z5J8-2|ANKAR MULTI-SECPEP UPN48_class_I_Rep_3 7 604.7684326171875 2 604.835988 1207.65742 0.54858 0.0003318 -1.2843 -0.0007768 -0.73573 -0.00044499 604.8351786028094 61.292 0.35564 64.805 64.629 64.984 3.5129 40 28 2 0 0 0 0.11959 1 13554 13554 7.9102 0.62092 1 117460 28140 3598 17755 17766 32651 32651 0.06190149959934388 NFKVRAIYI 9 Unmodified _NFKVRAIYI_ 0 0 0 REV__MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|35|3|anti-sense REV__MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|35|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.334759 1122.65496 0.13861 7.7946E-05 -0.14439 -8.1195E-05 -0.0057763 -3.2482E-06 562.3345775921655 28.018 0.2577 28.018 27.84 28.098 0 28 18 2 0 0 0 0.48846 1 4238 4238 1.8442 0 1 299550 + 28141 31346 17756 17767 32652 32652 0.09854301502264207 NFKYEFVL 8 Unmodified _NFKYEFVL_ 0 0 0 REV__LTR10C_dup219|chr8:51877069-51877652:-|1.4111840854561473|0.0151002652258175|6.55|151.0|37|3|anti-sense REV__LTR10C_dup219|chr8:51877069-51877652:-|1.4111840854561473|0.0151002652258175|6.55|151.0|37|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.2799682617188 2 530.279118 1058.54368 0.37665 0.00019973 -0.031671 -1.6795E-05 0.34498 0.00018293 530.2791173095331 66.906 0.61323 70.097 69.743 70.357 3.1914 60 46 2 0 0 0 0.82752 1 16103 16103 3.9444 1.2092 1 150340 + 28142 30784 17757 17768 32653 32653 0.01675242074338712 NFLEFIEAHF 10 Unmodified _NFLEFIEAHF_ 0 0 0 L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|232|1|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|232|1|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|232|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.3121948242188 2 633.811313 1265.60807 0.41724 0.00026445 0.041912 2.6565E-05 0.45915 0.00029102 633.8112675129375 62.765 0.56177 65.934 65.578 66.14 3.1698 48 30 2 0 0 0 0.56078 1 14900 14900 3.2813 0 1 90520 28143 15004 17758 17769 32654 32654 -0.014106028395417525 NFLFVVVSLP 10 Unmodified _NFLFVVVSLP_ 0 0 0 L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|257|2|anti-sense L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|257|2|anti-sense L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|257|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 567.3305053710938 2 567.831517 1133.64848 0.48361 0.00027461 1.4521 0.00082457 1.9357 0.0010992 567.8323566654799 81.404 0.11227 85.089 85.06 85.172 3.685 22 14 2 0 0 0 0.84575 1 19285 19285 3.2813 0.28607 1 129830 28144 14817 17759 17770 32655 32655 0.08700363550906332 NFLKKVRRLIM 11 Unmodified _NFLKKVRRLIM_ 0 0 0 ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B MULTI-MSMS UPN47_class_I_Rep_2 3 473.6340026855469 3 473.298991 1416.87514 0.28848 0.00013654 0.42806 0.0002026 0.71654 0.00033914 473.29911248146 103.04 0.21964 106.57 106.41 106.63 3.5231 44 30 2 0 0 0 0.68081 1 25070 25070 0.45452 0.35968 1 176940 28145 5243 17760 17771 32656 32656 0.18338203838175104 NFLPAHIK 8 Unmodified _NFLPAHIK_ 0 0 0 Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|61|3|sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|61|3|sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|61|3|sense MSMS UPN48_class_I_Rep_3 7 470.27490234375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 53.932 1 57.515 57.015 58.015 3.5836 0 0 0 0.40625 1 11288 11288 2.3027 1.5091 1 28146 33430 17761 17772 32657 32657 0.062060988596158495 NFLRRKLF 8 Unmodified _NFLRRKLF_ 0 0 0 REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|145|3|sense REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|145|3|sense MSMS UPN46_class_I_Rep_3 1 547.3328857421875 2 547.335093 1092.65563 NaN NaN NaN NaN NaN NaN NaN 96.91 1 96.91 96.41 97.41 0 0 0 0 0.40746 1 23572 23572 0.69038 0 1 + 28147 30077 17762 17773 32658 32658 0.1130114094196415 NFLRRKLF 8 Unmodified _NFLRRKLF_ 0 0 0 REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|145|3|sense REV__L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|145|3|sense MSMS UPN48_class_I_Rep_2 6 547.3456420898438 2 547.335093 1092.65563 NaN NaN NaN NaN NaN NaN NaN 110.77 1 114.44 113.94 114.94 3.669 0 0 0 0.40746 1 26354 26354 0.69038 0 1 + 28148 30077 17762 17773 32659 32659 0.1130114094196415 NFLSNFFV 8 Unmodified _NFLSNFFV_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|15|1|sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 494.2489013671875 2 494.25036 986.486168 NaN NaN NaN NaN NaN NaN NaN 55.555 1 59.11 58.61 59.61 3.5554 0 0 0 0.40738 1 11788 11788 0.79363 0 1 + 28149 24451 17763 17774 32660 32660 -0.007616001312385379 NFLVGDAHLVG 11 Unmodified _NFLVGDAHLVG_ 0 0 0 MER21B_dup1192|chr8:27411764-27412466:-|1.069974679643637|0.008528388006094|6.97|151.0|4|1|sense MER21B_dup1192|chr8:27411764-27412466:-|1.069974679643637|0.008528388006094|6.97|151.0|4|1|sense MER21B_dup1192|chr8:27411764-27412466:-|1.069974679643637|0.008528388006094|6.97|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.8014526367188 2 571.303655 1140.59276 -0.044115 -2.5203E-05 -0.52719 -0.00030119 -0.57131 -0.00032639 571.3034760396619 40.404 0.075584 44.071 44.044 44.12 3.6668 9 6 2 0 0 0 22.551 1 8013 8013 1.4819 0.68827 1 49337 28150 15862 17764 17775 32661 32661 0.02808530363245154 NFMHFCFLF 9 Unmodified _NFMHFCFLF_ 0 0 0 REV__L1MB2_dup255|chr1:90986776-90989267:+|3.107865481237544|0.1466926585025369|4.41|151.0|118|2|anti-sense REV__L1MB2_dup255|chr1:90986776-90989267:+|3.107865481237544|0.1466926585025369|4.41|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_1 2 603.2678833007812 2 603.267173 1204.51979 NaN NaN NaN NaN NaN NaN NaN 67.06 1 70.422 69.922 70.922 3.3611 0 0 0 0.40038 1 16103 16103 0.6015 0 1 + 28151 25711 17765 17776 32662 32662 -0.07428637955354134 NFMKEYTQ 8 Unmodified _NFMKEYTQ_ 0 0 0 REV__L1PB3_dup2664|chr12:42412223-42413526:-|1.4897998518382929|0.0492601515683032|4.92|151.0|38|3|sense REV__L1PB3_dup2664|chr12:42412223-42413526:-|1.4897998518382929|0.0492601515683032|4.92|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 530.743896484375 2 530.742042 1059.46953 NaN NaN NaN NaN NaN NaN NaN 115.63 1 119.29 118.79 119.79 3.6607 0 0 0 0.40625 1 27683 27683 2.3027 0 1 + 28152 25460 17766 17777 32663 32663 -0.057824690794859634 NFMMPPWRK 9 Unmodified _NFMMPPWRK_ 0 0 0 nc|ENSG00000120907|P35348-4|ADRA1A nc|ENSG00000120907|P35348-4|ADRA1A nc|ENSG00000120907|P35348-4|ADRA1A MULTI-MSMS UPN48_class_I_Rep_2 6 603.7984619140625 2 603.799171 1205.58379 0.41584 0.00025108 -0.62552 -0.00037769 -0.20968 -0.0001266 603.7987436292843 43.12 0.88124 46.882 46.535 47.417 3.7617 94 69 2 0 0 0 0.46869 1 8086 8086 3.9444 1.8846 1 138300 28153 16674 17767 17778 32664 32664 -0.010778577983955984 NFNSERGKW 9 Unmodified _NFNSERGKW_ 0 0 0 REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|48|2|sense REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|48|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.2744140625 2 569.275429 1136.53631 0.014856 8.4571E-06 -0.81059 -0.00046145 -0.79573 -0.00045299 569.2747315986541 42.534 0.519 46.221 45.947 46.466 3.6875 46 36 2 0 0 0 0.49026 1 8636 8636 1.6526 0.45928 1 57994 + 28154 26750 17768 17779 32665 32665 -0.026500974733835392 NFNYITFW 8 Unmodified _NFNYITFW_ 0 0 0 L1MC2_dup5461|chr17:30501794-30502505:+|1.0517670805854986|0.1424628426382019|2.88|150.0|14|2|sense L1MC2_dup5461|chr17:30501794-30502505:+|1.0517670805854986|0.1424628426382019|2.88|150.0|14|2|sense L1MC2_dup5461|chr17:30501794-30502505:+|1.0517670805854986|0.1424628426382019|2.88|150.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 552.7618408203125 2 552.761092 1103.50763 NaN NaN NaN NaN NaN NaN NaN 74.62 1 78.11 77.61 78.61 3.49 0 0 0 0.40746 1 17639 17639 0.69038 0 1 28155 11274 17769 17780 32666 32666 -0.039982151025242274 NFPGEAEGRL 10 Unmodified _NFPGEAEGRL_ 0 0 0 HERV17-int_dup96|chr2:53757098-53757809:+|1.3395805219985144|0.3121395327959594|2.1|151.0|3|1|sense HERV17-int_dup96|chr2:53757098-53757809:+|1.3395805219985144|0.3121395327959594|2.1|151.0|3|1|sense HERV17-int_dup96|chr2:53757098-53757809:+|1.3395805219985144|0.3121395327959594|2.1|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 545.271728515625 2 545.269813 1088.52507 NaN NaN NaN NaN NaN NaN NaN 32.045 1 35.758 35.258 36.258 3.7131 0 0 0 0.53105 1 5462 5462 2.9952 0 1 28156 8026 17770 17781 32667 32667 -0.015649195675223382 NFPYFHRI 8 Unmodified _NFPYFHRI_ 0 0 0 L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|53|3|anti-sense L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|53|3|anti-sense L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|53|3|anti-sense MSMS UPN48_class_I_Rep_2 6 547.2830200195312 2 547.282526 1092.5505 NaN NaN NaN NaN NaN NaN NaN 37.107 1 40.809 40.309 41.309 3.7021 0 0 0 0.40625 1 6313 6313 2.3027 0 1 28157 13178 17771 17782 32668 32668 0.007925997455686229 NFQIRMKY 8 Unmodified _NFQIRMKY_ 0 0 0 REV__L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|141|2|anti-sense REV__L1PB1_dup2366|chr3:111642835-111645528:+|11.741231378881702|0.2758841442707322|5.41|151.0|141|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2880859375 2 550.289494 1098.56443 NaN NaN NaN NaN NaN NaN NaN 52.368 1 55.926 55.426 56.426 3.5585 0 0 0 0.39819 1 11646 11646 8.5933 1.8701 1 + 28158 30370 17772 17783 32669 32669 0.019095091823373878 NFRHPNPI 8 Unmodified _NFRHPNPI_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MSMS UPN47_class_I_Rep_2 3 498.2471618652344 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 42.625 1 45.986 45.486 46.486 3.3611 0 0 0 0.40625 1 8711 8711 2.3027 0.4585 1 28159 1205 17773 17784 32670 32670 0.017431425686936564 NFRKQRRD 8 Unmodified _NFRKQRRD_ 0 0 0 L1MEc_dup7453|chr6:142194213-142196619:-|2.852345976774643|0.1337625414318995|4.41|151.0|47|2|sense L1MEc_dup7453|chr6:142194213-142196619:-|2.852345976774643|0.1337625414318995|4.41|151.0|47|2|sense L1MEc_dup7453|chr6:142194213-142196619:-|2.852345976774643|0.1337625414318995|4.41|151.0|47|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.311767578125 2 560.310138 1118.60572 0.59194 0.00033167 1.2411 0.00069541 1.833 0.0010271 560.3109218873643 13.832 0.20413 17.347 17.272 17.476 3.5156 48 28 2 0 0 0 0.82752 1 307 307 0.6015 0 1 29254 28160 13134 17774 17785 32671 32671 0.05116406266051854 NFRKYVTY 8 Unmodified _NFRKYVTY_ 0 0 0 REV__L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|63|2|sense REV__L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|63|2|sense MSMS UPN48_class_I_Rep_1 5 545.7890625 2 545.787641 1089.56073 NaN NaN NaN NaN NaN NaN NaN 26.895 1 30.458 29.958 30.958 3.5629 0 0 0 0.40604 1 3376 3376 2.5775 0 1 + 28161 24601 17775 17786 32672 32672 0.01953162680160858 NFRLFRQR 8 Unmodified _NFRLFRQR_ 0 0 0 REV__L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|23|3|sense REV__L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|23|3|sense MSMS UPN46_class_I_Rep_3 1 568.824951171875 2 568.825424 1135.63629 NaN NaN NaN NaN NaN NaN NaN 41.813 1 41.813 41.313 42.313 0 0 0 0 0.40625 1 8227 8227 2.3027 0 1 + 28162 26468 17776 17787 32673 32673 0.07390184651080745 NFRTHRIY 8 Unmodified _NFRTHRIY_ 0 0 0 HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|35|3|sense HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|35|3|sense HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.8132934570312 2 553.796332 1105.57811 0.51509 0.00028526 -1.3794 -0.00076392 -0.86433 -0.00047866 553.7954262003069 57.481 0.46708 60.772 60.486 60.953 3.2912 72 38 2 0 0 0 0.82752 2 13196 13196;13235 9.3474 0.75416 1 174120 28163 7792 17777 17788 32674;32675 32674 0.029545030057988697 NFRYLVKPLT 10 Unmodified _NFRYLVKPLT_ 0 0 0 REV__L1PA6_dup45|chr1:41208442-41210813:+|1.256093874634295|0.0268230449387912|5.55|150.0|21|1|sense REV__L1PA6_dup45|chr1:41208442-41210813:+|1.256093874634295|0.0268230449387912|5.55|150.0|21|1|sense MSMS UPN47_class_I_Rep_3 4 625.8657836914062 2 625.866423 1249.71829 NaN NaN NaN NaN NaN NaN NaN 108.73 1 112.27 111.77 112.77 3.5382 0 0 0 0.53105 1 26644 26644 3.5965 0 1 + 28164 29913 17778 17789 32676 32676 0.1034224221950808 NFSLNVEH 8 Unmodified _NFSLNVEH_ 0 0 0 ENST00000366898.5_1_6:162394397-162475160:-|nuORF ENST00000366898.5_1_6:162394397-162475160:-|nuORF ENST00000366898.5_1_6:162394397-162475160:-|nuORF MSMS UPN47_class_I_Rep_2 3 480.2326354980469 2 480.232699 958.450845 NaN NaN NaN NaN NaN NaN NaN 23.685 1 27.151 26.651 27.651 3.4655 0 0 0 0.40625 1 3020 3020 2.3027 0 1 28165 6341 17779 17790 32677 32677 -0.030042626590443433 NFSVSQSITY 10 Unmodified _NFSVSQSITY_ 0 0 0 REV__L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|253|3|anti-sense REV__L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|253|3|anti-sense MSMS UPN47_class_I_Rep_1 2 573.2771606445312 2 573.277303 1144.54005 NaN NaN NaN NaN NaN NaN NaN 44.147 1 47.842 47.342 48.342 3.6951 0 0 0 0.53105 1 9150 9150 2.7352 0 1 + 28166 29960 17780 17791 32678 32678 -0.026434724901719164 NFTFQTYIEI 10 Unmodified _NFTFQTYIEI_ 0 0 0 HAL1_dup18504|chr14:73081421-73082245:-|1.4073152963263045|0.0136853909204189|6.68|151.0|50|3|anti-sense HAL1_dup18504|chr14:73081421-73082245:-|1.4073152963263045|0.0136853909204189|6.68|151.0|50|3|anti-sense HAL1_dup18504|chr14:73081421-73082245:-|1.4073152963263045|0.0136853909204189|6.68|151.0|50|3|anti-sense MSMS UPN46_class_I_Rep_3 1 638.3153686523438 2 638.316428 1274.6183 NaN NaN NaN NaN NaN NaN NaN 90.363 1 90.363 89.863 90.863 0 0 0 0 0.53105 1 21789 21789 1.6526 0 1 28167 7840 17781 17792 32679 32679 -0.008020399049883054 NFTLLASLGKV 11 Unmodified _NFTLLASLGKV_ 0 0 0 ENST00000523439.1_1_19:57999318-58003198:+|nuORF ENST00000523439.1_1_19:57999318-58003198:+|nuORF ENST00000523439.1_1_19:57999318-58003198:+|nuORF MSMS UPN48_class_I_Rep_2 6 581.8435668945312 2 581.845156 1161.67576 NaN NaN NaN NaN NaN NaN NaN 89.739 1 93.486 92.986 93.986 3.7471 0 0 0 0.38417 1 21390 21390 1.0715 0 1 28168 7244 17782 17793 32680 32680 0.10138847091252501 NFTNVAATF 9 Unmodified _NFTNVAATF_ 0 0 0 ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF ENSG00000131473|ENST00000352035|ACLY ENSG00000131473|ENST00000352035|ACLY MSMS UPN48_class_I_Rep_2 6 492.7429504394531 2 492.742899 983.471246 NaN NaN NaN NaN NaN NaN NaN 62.741 1 66.215 65.715 66.715 3.4738 0 0 0 0.29913 1 14048 14048 10.8 3.6978 1 28169 2713 17783 17794 32681 32681 -0.02115091999246488 NFTYKYTN 8 Unmodified _NFTYKYTN_ 0 0 0 L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|146|3|sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|146|3|sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|146|3|sense MSMS UPN47_class_I_Rep_3 4 525.7493896484375 2 525.748182 1049.48181 NaN NaN NaN NaN NaN NaN NaN 26.918 1 30.261 29.761 30.761 3.3422 0 0 0 0.40527 1 4011 4011 3.5965 1.019 1 28170 9280 17784 17795 32682 32682 -0.040951093448029496 NFVHKVKS 8 Unmodified _NFVHKVKS_ 0 0 0 HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|314|3|anti-sense HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|314|3|anti-sense HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|314|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.7790832519531 2 479.777077 957.5396 NaN NaN NaN NaN NaN NaN NaN 73.24 1 76.805 76.305 77.305 3.5645 0 0 0 0.40625 1 17189 17189 2.3027 0.24298 1 28171 8392 17785 17796 32683 32683 0.059131973712851504 NFVHKVKS 8 Unmodified _NFVHKVKS_ 0 0 0 HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|314|3|anti-sense HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|314|3|anti-sense HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|314|3|anti-sense MSMS UPN48_class_I_Rep_3 7 479.77947998046875 2 479.777077 957.5396 NaN NaN NaN NaN NaN NaN NaN 73.61 1 77.16 76.66 77.66 3.5505 0 0 0 0.40625 1 17231 17231 2.3027 1.5091 1 28172 8392 17785 17796 32684 32684 0.059131973712851504 NFVKEIPF 8 Unmodified _NFVKEIPF_ 0 0 0 REV__L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|139|3|anti-sense REV__L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|139|3|anti-sense MSMS UPN48_class_I_Rep_1 5 497.2751770019531 2 497.273835 992.533118 NaN NaN NaN NaN NaN NaN NaN 69.356 1 72.811 72.311 73.311 3.4548 0 0 0 0.40625 1 16084 16084 2.3027 0 1 + 28173 24801 17786 17797 32685 32685 0.036552594199065425 NFVKNFALF 9 Unmodified _NFVKNFALF_ 0 0 0 L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.3011474609375 2 550.300384 1098.58622 0.58818 0.00032367 -0.015788 -8.6879E-06 0.57239 0.00031499 550.3003639657201 64.647 0.84332 68.101 67.835 68.679 3.4541 102 64 3 0 0 0 0.40174 3 14657 14657;14697;14776 7.9102 7.9102 1 230260 28174 13370 17787 17798 32686;32687;32688 32686 0.040866372025675446 NFVKNFALF 9 Unmodified _NFVKNFALF_ 0 0 0 L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.30029296875 2 550.300384 1098.58622 0.52487 0.00028883 0.21579 0.00011875 0.74066 0.00040758 550.3004271315218 64.63 0.64952 68.109 67.72 68.37 3.4792 72 48 2 0 0 0 0.40174 2 14596 14596;14686 7.9102 4.3292 1 182450 28175 13370 17787 17798 32689;32690 32689 0.040866372025675446 NFVKNFALF 9 Unmodified _NFVKNFALF_ 0 0 0 L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|97|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.3007202148438 2 550.300384 1098.58622 0.44355 0.00024408 -0.17206 -9.4686E-05 0.27149 0.0001494 550.3003424114419 64.465 0.90923 67.974 67.571 68.481 3.5083 132 78 2 0 0 0 0.40174 1 14497 14497 7.9102 7.9102 1 206260 28176 13370 17787 17798 32691 32691 0.040866372025675446 NFVVVPIYDA 10 Unmodified _NFVVVPIYDA_ 0 0 0 REV__L1MC5_dup12422|chr15:58909001-58910274:+|4.679305470743143|0.147960255515475|4.98|151.0|55|1|anti-sense REV__L1MC5_dup12422|chr15:58909001-58910274:+|4.679305470743143|0.147960255515475|4.98|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_3 4 568.8048706054688 2 568.802957 1135.59136 NaN NaN NaN NaN NaN NaN NaN 43.883 1 47.125 46.625 47.625 3.2419 0 0 0 0.53105 1 9149 9149 1.4819 0 1 + 28177 27060 17788 17799 32692 32692 0.028988962745415847 NFYDFARQ 8 Unmodified _NFYDFARQ_ 0 0 0 REV__ENSG00000071537|ENST00000336735|SEL1L REV__ENSG00000071537|ENST00000336735|SEL1L MSMS UPN48_class_I_Rep_2 6 530.7345581054688 2 530.745973 1059.47739 NaN NaN NaN NaN NaN NaN NaN 20.315 1 23.963 23.463 24.463 3.648 0 0 0 0.40604 1 1720 1720 2.5775 0.51773 1 + 28178 17813 17789 17800 32693 32693 -0.04996573767743939 NFYFCLHFVIY 11 Unmodified _NFYFCLHFVIY_ 0 0 0 L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|198|1|anti-sense L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|198|1|anti-sense L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|198|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.5713195800781 3 489.237286 1464.69003 0.15614 7.6388E-05 -0.21378 -0.00010459 -0.057646 -2.8203E-05 489.23711230804895 43.679 1.2197 47.318 46.805 48.025 3.6385 125 85 2 0 0 0 0.68024 1 8216 8216 0.50596 0 1 169290 28179 14795 17790 17801 32694 32694 -0.023728237520799667 NFYIFSIQSG 10 Unmodified _NFYIFSIQSG_ 0 0 0 REV__Charlie1a_dup3082|chr9:70319169-70320176:-|1.1027674500542837|0.3028917814985337|1.86|150.0|38|3|sense REV__Charlie1a_dup3082|chr9:70319169-70320176:-|1.1027674500542837|0.3028917814985337|1.86|150.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.790771484375 2 588.290214 1174.56587 0.45499 0.00026766 -0.90218 -0.00053074 -0.44719 -0.00026308 588.7902500812291 70.573 0.080513 74.033 74.004 74.084 3.4598 8 6 2 0 0 0 0.55148 1 16463 16463 5.2969 0 1 64543 + 28180 17317 17791 17802 32695 32695 -0.014425782479065674 NFYIHVRY 8 Unmodified _NFYIHVRY_ 0 0 0 REV__MER6A_dup455|chr6:136591254-136591686:+|1.4348235109688567|0.0506432768119509|4.82|151.0|12|2|sense REV__MER6A_dup455|chr6:136591254-136591686:+|1.4348235109688567|0.0506432768119509|4.82|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 556.2881469726562 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 23.325 1 26.968 26.468 27.468 3.6432 0 0 0 0.40746 1 2526 2526 0.69038 0 1 + 28181 31548 17792 17803 32696 32696 0.010205823999967834 NFYKHWET 8 Unmodified _NFYKHWET_ 0 0 0 Tigger1_dup2806|chr3:183742243-183743167:+|1.9550602656315663|0.0591428855914747|5.05|151.0|27|3|sense Tigger1_dup2806|chr3:183742243-183743167:+|1.9550602656315663|0.0591428855914747|5.05|151.0|27|3|sense Tigger1_dup2806|chr3:183742243-183743167:+|1.9550602656315663|0.0591428855914747|5.05|151.0|27|3|sense MSMS UPN48_class_I_Rep_2 6 562.7753295898438 2 562.761623 1123.50869 NaN NaN NaN NaN NaN NaN NaN 112.33 1 116 115.5 116.5 3.6648 0 0 0 0.40625 1 26758 26758 2.3027 0 1 28182 33063 17793 17804 32697 32697 -0.048120007336365234 NFYPQLSQ 8 Unmodified _NFYPQLSQ_ 0 0 0 REV__MER57A1_dup320|chr5:55439128-55439546:+|1.7845846153260445|0.2356127491661822|2.92|151.0|6|2|sense REV__MER57A1_dup320|chr5:55439128-55439546:+|1.7845846153260445|0.2356127491661822|2.92|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 498.2849426269531 2 498.742899 995.471246 NaN NaN NaN NaN NaN NaN NaN 20.426 1 23.834 23.334 24.334 3.4074 0 0 0 0.40738 1 2117 2117 0.79363 0 1 + 28183 31450 17794 17805 32698 32698 -0.026670919992284325 NFYQNTNDIL 10 Unmodified _NFYQNTNDIL_ 0 0 0 L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|19|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|19|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|19|1|sense MSMS UPN48_class_I_Rep_2 6 621.2931518554688 2 621.293485 1240.57242 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.57 117.07 118.07 3.663 0 0 0 0.53105 1 27202 27202 1.4819 0.28856 1 28184 9408 17795 17806 32699 32699 -0.03824685087192847 NGAEPNYH 8 Unmodified _NGAEPNYH_ 0 0 0 ENST00000541403.1_1_11:71809825-71814270:-|nuORF;ENST00000535872.1_1_11:71808870-71814295:-|nuORF;ENST00000539797.5_1_11:71808870-71811703:-|nuORF;ENSG00000149357|ENST00000278671|LAMTOR1 ENST00000541403.1_1_11:71809825-71814270:-|nuORF ENST00000541403.1_1_11:71809825-71814270:-|nuORF MSMS UPN46_class_I_Rep_3 1 451.1937561035156 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 49.58 1 49.58 49.08 50.08 0 0 0 0 0.40604 1 10418 10418 2.5775 0 1 28185 3540 17796 17807 32700 32700 -0.08157695244290153 NGAEPNYH 8 Unmodified _NGAEPNYH_ 0 0 0 ENST00000541403.1_1_11:71809825-71814270:-|nuORF;ENST00000535872.1_1_11:71808870-71814295:-|nuORF;ENST00000539797.5_1_11:71808870-71811703:-|nuORF;ENSG00000149357|ENST00000278671|LAMTOR1 ENST00000541403.1_1_11:71809825-71814270:-|nuORF ENST00000541403.1_1_11:71809825-71814270:-|nuORF MSMS UPN48_class_I_Rep_3 7 451.1938781738281 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 41.166 1 44.812 44.312 45.312 3.6458 0 0 0 0.40604 1 7406 7406 2.5775 0.51773 1 28186 3540 17796 17807 32701 32701 -0.08157695244290153 NGCILLKF 8 Unmodified _NGCILLKF_ 0 0 0 REV__MLT1E3_dup1792|chr20:1153217-1153655:-|1.048869413170849|0.0988175425818339|3.41|151.0|7|1|sense REV__MLT1E3_dup1792|chr20:1153217-1153655:-|1.048869413170849|0.0988175425818339|3.41|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 454.2562561035156 2 454.257131 906.499709 NaN NaN NaN NaN NaN NaN NaN 92.348 1 92.348 91.848 92.848 0 0 0 0 0.40746 1 22346 22346 0.69038 0 1 + 28187 31702 17797 17808 32702 32702 0.042719343763451434 NGFLFSWVY 9 Unmodified _NGFLFSWVY_ 0 0 0 L1M4_dup9839|chr9:77777332-77778116:+|1.8380200558017712|0.0170566369293118|6.75|150.0|33|1|anti-sense L1M4_dup9839|chr9:77777332-77778116:+|1.8380200558017712|0.0170566369293118|6.75|150.0|33|1|anti-sense L1M4_dup9839|chr9:77777332-77778116:+|1.8380200558017712|0.0170566369293118|6.75|150.0|33|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.7765502929688 2 566.776742 1131.53893 0.20356 0.00011537 -1.4043 -0.00079591 -1.2007 -0.00068054 566.776620496602 44.865 1.1257 48.221 47.805 48.931 3.3556 153 69 3 0 0 0 0.35081 2 9376 9376;9446 10.824 0 1 219320 28188 8932 17798 17809 32703;32704 32703 -0.021576420684368713 NGFNSDYLE 9 Unmodified _NGFNSDYLE_ 0 0 0 MER49_dup454|chr5:43097538-43098393:+|1.7013862123563197|0.3103642336993636|2.45|151.0|62|3|anti-sense MER49_dup454|chr5:43097538-43098393:+|1.7013862123563197|0.3103642336993636|2.45|151.0|62|3|anti-sense MER49_dup454|chr5:43097538-43098393:+|1.7013862123563197|0.3103642336993636|2.45|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_2 3 529.7237548828125 2 529.724904 1057.43525 NaN NaN NaN NaN NaN NaN NaN 117.49 1 120.98 120.48 121.48 3.4891 0 0 0 0.39428 1 28719 28719 2.0598 0.21551 1 28189 16013 17799 17810 32705 32705 -0.0911659396676896 NGGHVLWK 8 Unmodified _NGGHVLWK_ 0 0 0 MER66B_dup46|chr1:50607882-50608369:-|1.2436539448330033|0.0150713373307148|6.37|151.0|24|1|anti-sense MER66B_dup46|chr1:50607882-50608369:-|1.2436539448330033|0.0150713373307148|6.37|151.0|24|1|anti-sense MER66B_dup46|chr1:50607882-50608369:-|1.2436539448330033|0.0150713373307148|6.37|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_2 6 455.7493591308594 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 25.963 1 29.596 29.096 30.096 3.6332 0 0 0 0.40604 1 3238 3238 2.5775 0 1 28190 16189 17800 17811 32706 32706 0.02372355165709905 NGGQCSSR 8 Unmodified _NGGQCSSR_ 0 0 0 LTBP3|p.D596*|1|0.12|ENSG00000168056|chr11:65547981-65547982|-/G|frameshift_variant;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1;ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1 LTBP3|p.D596*|1|0.12|ENSG00000168056|chr11:65547981-65547982|-/G|frameshift_variant LTBP3|p.D596*|1|0.12|ENSG00000168056|chr11:65547981-65547982|-/G|frameshift_variant MULTI-SECPEP UPN46_class_I_Rep_3 1 404.2328186035156 2 404.671951 807.329349 0.043766 1.7711E-05 -0.3103 -0.00012557 -0.26653 -0.00010786 404.6717254941756 78.919 0.29117 78.919 78.785 79.076 0 38 27 2 0 0 0 0.72333 1 18557 18557 5.2307 0.90143 1 145290 28191 902 17801 17812 32707 32707 -0.08202208293209878 NGHANGSSDIL 11 Unmodified _NGHANGSSDIL_ 0 0 0 REV__L1MC5_dup9466|chr10:69138443-69139294:-|1.1469809858633802|0.0309801654851118|5.21|151.0|49|2|anti-sense REV__L1MC5_dup9466|chr10:69138443-69139294:-|1.1469809858633802|0.0309801654851118|5.21|151.0|49|2|anti-sense MSMS UPN47_class_I_Rep_1 2 542.7545166015625 2 542.754527 1083.4945 NaN NaN NaN NaN NaN NaN NaN 31.271 1 35.001 34.501 35.501 3.7293 0 0 0 0.38417 1 5224 5224 2.9952 0.41776 1 + 28192 27101 17802 17813 32708 32708 -0.04390697952544542 NGIDLSVIF 9 Unmodified _NGIDLSVIF_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|148|3|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|148|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.2688903808594 2 489.26875 976.522947 0.159 7.7792E-05 -0.17461 -8.5431E-05 -0.015612 -7.6383E-06 489.2685868412543 76.562 0.64623 79.977 79.651 80.297 3.4149 97 61 2 0 0 0 0.42249 1 19006 19006 6.7232 0 1 130720 + 28193 28019 17803 17814 32709 32709 0.03374651694662134 NGKGHVRKAF 10 Unmodified _NGKGHVRKAF_ 0 0 0 REV__HAL1_dup2142|chr2:26049830-26050512:-|1.9077617826790445|0.0178164300519397|6.74|150.0|30|1|anti-sense REV__HAL1_dup2142|chr2:26049830-26050512:-|1.9077617826790445|0.0178164300519397|6.74|150.0|30|1|anti-sense MSMS UPN48_class_I_Rep_2 6 557.3159790039062 2 557.317432 1112.62031 NaN NaN NaN NaN NaN NaN NaN 73.892 1 77.47 76.97 77.97 3.5779 0 0 0 0.53105 1 17368 17368 3.2813 0.28607 1 + 28194 23404 17804 17815 32710 32710 0.06850478414162353 NGKGNIYH 8 Unmodified _NGKGNIYH_ 0 0 0 REV__L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|76|2|sense REV__L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|76|2|sense MSMS UPN47_class_I_Rep_1 2 451.72705078125 2 451.727584 901.440614 NaN NaN NaN NaN NaN NaN NaN 19.088 1 22.669 22.169 23.169 3.5806 0 0 0 0.40364 1 1703 1703 5.7604 0 1 + 28195 28866 17805 17816 32711 32711 -0.014048255936245369 NGKKRNISI 9 Unmodified _NGKKRNISI_ 0 0 0 REV__L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|36|1|sense REV__L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|36|1|sense MSMS UPN48_class_I_Rep_2 6 515.3101196289062 2 515.311815 1028.60908 NaN NaN NaN NaN NaN NaN NaN 89.503 1 93.251 92.751 93.751 3.7471 0 0 0 0.39428 1 21328 21328 2.0598 0 1 + 28196 29857 17806 17817 32712 32712 0.09591656320048969 NGKVKKHQ 8 Unmodified _NGKVKKHQ_ 0 0 0 REV__HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|10|1|sense REV__HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 469.7787170410156 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 84.084 1 87.434 86.934 87.934 3.35 0 0 0 0.40604 1 21098 21098 2.5775 0.51773 1 + 28197 23445 17807 17818 32713 32713 0.07447715602802418 NGKVVNRL 8 Unmodified _NGKVVNRL_ 0 0 0 REV__HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|159|3|anti-sense REV__HERVFH19-int_dup54|chrX:72224769-72227745:+|3.040349319267749|0.0748019488429889|5.35|151.0|159|3|anti-sense MSMS UPN46_class_I_Rep_3 1 450.2751770019531 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 89.501 1 89.501 89.001 90.001 0 0 0 0 0.40625 1 21534 21534 2.3027 0 1 + 28198 23645 17808 17819 32714 32714 0.08152313228526964 NGLNIPVSPN 10 Unmodified _NGLNIPVSPN_ 0 0 0 MLT1A0_dup20426|chr22:24394168-24394531:-|1.0411327630790752|0.0352046230417058|4.89|151.0|1|1|sense MLT1A0_dup20426|chr22:24394168-24394531:-|1.0411327630790752|0.0352046230417058|4.89|151.0|1|1|sense MLT1A0_dup20426|chr22:24394168-24394531:-|1.0411327630790752|0.0352046230417058|4.89|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.7758178710938 2 512.774731 1023.53491 -0.23589 -0.00012096 -0.0042438 -2.1761E-06 -0.24013 -0.00012313 512.7746561774516 37.97 0.6016 41.212 40.956 41.558 3.2414 92 46 3 0 0 0 0.53004 1 7407 7407 8.1555 1.0538 1 148500 28199 16255 17809 17820 32715 32715 0.02408268437852712 NGLPLGLVKH 10 Unmodified _NGLPLGLVKH_ 0 0 0 ENST00000396355.5_1_16:15818759-15818942:+|nuORF ENST00000396355.5_1_16:15818759-15818942:+|nuORF ENST00000396355.5_1_16:15818759-15818942:+|nuORF MSMS UPN48_class_I_Rep_3 7 524.8053588867188 2 524.319109 1046.62366 NaN NaN NaN NaN NaN NaN NaN 48.111 1 51.745 51.245 52.245 3.6339 0 0 0 0.53105 1 9515 9515 1.4819 0.68827 1 28200 6566 17810 17821 32716 32716 0.10221728468172842 NGNPLLPFPG 10 Unmodified _NGNPLLPFPG_ 0 0 0 ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33 ENST00000307403.6_1_7:155532339-155538302:+|nuORF ENST00000307403.6_1_7:155532339-155538302:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 513.776123046875 2 513.274367 1024.53418 0.3783 0.00019417 0.81284 0.00041721 1.1911 0.00061138 513.7763383787667 62.828 0.083759 66.291 66.261 66.345 3.4625 5 4 2 0 0 0 0.55983 1 14102 14102 3.9444 0 1 61707 28201 5067 17811 17822 32717 32717 0.022894737888236705 NGNPLLPFPG 10 Unmodified _NGNPLLPFPG_ 0 0 0 ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33 ENST00000307403.6_1_7:155532339-155538302:+|nuORF ENST00000307403.6_1_7:155532339-155538302:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 513.274367 1024.53418 0.32903 0.00016888 -0.046281 -2.3755E-05 0.28275 0.00014513 513.273944386701 62.691 0.076916 66.202 66.181 66.258 3.5104 -0.044325 -0.00056966 NaN 3.9444 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 72436 28202 5067 17811 17822 0.022894737888236705 NGPALRSLR 9 Unmodified _NGPALRSLR_ 0 0 0 REV__MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|39|1|anti-sense REV__MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_2 6 492.2795715332031 2 492.290882 982.567212 NaN NaN NaN NaN NaN NaN NaN 35.442 1 39.13 38.63 39.63 3.6877 0 0 0 0.38639 1 5841 5841 3.9444 0 1 + 28203 31422 17812 17823 32718 32718 0.07523100631510715 NGQFFATTKA 10 Unmodified _NGQFFATTKA_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MSMS UPN47_class_I_Rep_1 2 542.777099609375 2 542.774731 1083.53491 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.25 118.75 119.75 3.5943 0 0 0 0.53105 1 28620 28620 1.3295 0.5359 1 + 28204 19153 17813 17824 32719 32719 -0.0035173156215932977 NGQNNPINLI 10 Unmodified _NGQNNPINLI_ 0 0 0 REV__L1PB1_dup6834|chr8:129425380-129429594:-|1.7361287744582976|0.0195891756605943|6.47|151.0|83|2|sense REV__L1PB1_dup6834|chr8:129425380-129429594:-|1.7361287744582976|0.0195891756605943|6.47|151.0|83|2|sense MSMS UPN48_class_I_Rep_2 6 548.788818359375 2 548.790912 1095.56727 NaN NaN NaN NaN NaN NaN NaN 78.418 1 82.04 81.54 82.54 3.6222 0 0 0 0.53105 1 18603 18603 43.858 2.0187 1 + 28205 30474 17814 17825 32720 32720 0.023310558408411453 NGQTKHLIRAF 11 Unmodified _NGQTKHLIRAF_ 0 0 0 REV__MER21C_dup525|chr2:24088651-24089002:+|1.0886277230661707|0.0424149814246594|4.68|151.0|24|2|anti-sense REV__MER21C_dup525|chr2:24088651-24089002:+|1.0886277230661707|0.0424149814246594|4.68|151.0|24|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 642.3624877929688 2 642.862203 1283.70985 0.63467 0.00040801 -0.58856 -0.00037836 0.046115 2.9646E-05 643.362819682465 104.29 0.17266 107.82 107.77 107.94 3.5289 59 27 3 0 0 0 22.551 1 25358 25358 2.9952 0 1 42144000 + 28206 31245 17815 17826 32721 32721 0.07934688302884751 NGQTREHAL 9 Unmodified _NGQTREHAL_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000509116.1_1_4:135966876-135967059:+|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_1 2 513.2594604492188 2 513.259779 1024.50501 -0.25439 -0.00013057 -0.25405 -0.00013039 -0.50844 -0.00026096 513.2595965128148 13.779 0.35359 17.236 17.154 17.507 3.457 79 42 3 0 0 0 0.20317 1 411 411 20.415 4.5674 1 123280 28207 3732 17816 17827 32722 32722 -0.0062667050747222675 NGQTREHAL 9 Unmodified _NGQTREHAL_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000509116.1_1_4:135966876-135967059:+|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_2 3 513.25927734375 2 513.259779 1024.50501 -0.28611 -0.00014685 -0.26235 -0.00013465 -0.54846 -0.0002815 513.2595996086432 13.861 0.27822 17.248 17.145 17.423 3.3871 69 30 3 0 0 0 0.39745 1 421 421 8.1555 0.8663 1 106570 28208 3732 17816 17827 32723 32723 -0.0062667050747222675 NGQTREHAL 9 Unmodified _NGQTREHAL_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000509116.1_1_4:135966876-135967059:+|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MATCH UPN47_class_I_Rep_2 3 2 513.259779 1024.50501 -0.28467 -0.00014611 -1.2705 -0.00065211 -1.5552 -0.00079822 513.2590322919915 14.056 0.054395 17.443 17.423 17.477 3.3871 0.10336 -0.0010241 NaN 20.415 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 26219 28209 3732 17816 17827 -0.0062667050747222675 NGQVAHTIA 9 Unmodified _NGQVAHTIA_ 0 0 0 REV__L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|9|1|sense REV__L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 455.7411804199219 2 455.740691 909.466829 NaN NaN NaN NaN NaN NaN NaN 19.836 1 23.448 22.948 23.948 3.6118 0 0 0 0.39598 1 1891 1891 1.6526 0.85899 1 + 28210 25313 17817 17828 32724 32724 0.008474435778566658 NGRINVVK 8 Unmodified _NGRINVVK_ 0 0 0 L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.2746887207031 2 450.274701 898.534849 0.18547 8.3511E-05 0.22007 9.9091E-05 0.40553 0.0001826 450.27482262620236 89.689 0.38512 89.689 89.51 89.895 0 59 35 2 0 0 0 0.82752 1 21573 21573 0.69038 0 1 271080 28211 9662 17818 17829 32725 32725 0.08152313228526964 NGRINVVK 8 Unmodified _NGRINVVK_ 0 0 0 L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 450.274701 898.534849 0.18547 8.3511E-05 0.22007 9.9091E-05 0.40553 0.0001826 450.27482262620236 89.689 0.38512 89.689 89.51 89.895 0 0.099312 -5.0383E-05 NaN 0.69038 59 35 2 NaN NaN NaN NaN 0 NaN NaN 0 271080 28212 9662 17818 17829 0.08152313228526964 NGRINVVK 8 Unmodified _NGRINVVK_ 0 0 0 L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|65|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 450.274701 898.534849 0.14925 6.7206E-05 0.3559 0.00016025 0.50516 0.00022746 450.2749264661228 85.803 0.17584 89.509 89.376 89.552 3.7058 -0.08012 7.1941E-05 NaN 0.69038 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 127110 28213 9662 17818 17829 0.08152313228526964 NGRLVSILF 9 Unmodified _NGRLVSILF_ 0 0 0 REV__L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|132|1|anti-sense REV__L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|132|1|anti-sense MSMS UPN47_class_I_Rep_2 3 509.80364990234375 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 76.847 1 80.179 79.679 80.679 3.3315 0 0 0 0.39518 1 19036 19036 1.8442 0.36234 1 + 28214 30530 17819 17830 32726 32726 0.08902039576855714 NGRPVGGR 8 Unmodified _NGRPVGGR_ 0 0 0 REV__ENST00000426393.5_1_1:63786716-63787081:-|nuORF REV__ENST00000426393.5_1_1:63786716-63787081:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 406.72796630859375 2 406.727918 811.441283 0.096573 3.9279E-05 0.024176 9.8329E-06 0.12075 4.9112E-05 406.7278410706755 97.678 0.64117 101.58 101.24 101.88 3.9022 112 87 2 0 0 0 0.82752 2 23159 23106;23159 2.3027 0 1 202470 + 28215 22268 17820 17831 32727;32728 32728 0.028020138460988164 NGSEKGYKD 9 Unmodified _NGSEKGYKD_ 0 0 0 REV__ENST00000550061.1_1_12:51393053-51393191:-|nuORF REV__ENST00000550061.1_1_12:51393053-51393191:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 499.23260498046875 2 499.232896 996.451239 -0.3516 -0.00017553 0.39917 0.00019928 0.047567 2.3747E-05 499.2330197324123 33.144 0.95938 36.431 36.074 37.033 3.2867 173 73 3 0 0 0 0.48846 1 6032 6032 1.8442 0.6509 1 310250 + 28216 22953 17821 17832 32729 32729 -0.047128877298519 NGSGKRKGP 9 Unmodified _NGSGKRKGP_ 0 0 0 REV__L1P1_dup1511|chr8:9654761-9656611:+|1.283604643729239|0.061583147452012|4.38|151.0|39|3|sense REV__L1P1_dup1511|chr8:9654761-9656611:+|1.283604643729239|0.061583147452012|4.38|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 450.7543640136719 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 106.55 1 106.55 106.05 107.05 0 0 0 0 0.39428 1 25985 25985 2.0598 0 1 + 28217 24003 17822 17833 32730 32730 0.03994552189044498 NGSQDNLNVFS 11 Unmodified _NGSQDNLNVFS_ 0 0 0 REV__nc|ENSG00000140153|Q8TBZ3-8|WDR20 REV__nc|ENSG00000140153|Q8TBZ3-8|WDR20 MSMS UPN46_class_I_Rep_3 1 597.771240234375 2 597.772916 1193.53128 NaN NaN NaN NaN NaN NaN NaN 12.868 1 12.868 12.368 13.368 0 0 0 0 0.38417 1 230 230 0.96228 0.36078 1 + 28218 19330 17823 17834 32731 32731 -0.05774446126656585 NGSSANIPPLK 11 Unmodified _NGSSANIPPLK_ 0 0 0 ENST00000574210.5_1_17:2594901-2597328:-|nuORF;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH ENST00000574210.5_1_17:2594901-2597328:-|nuORF ENST00000574210.5_1_17:2594901-2597328:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.3013916015625 2 549.301113 1096.58767 0.48944 0.00026885 -0.071321 -3.9177E-05 0.41812 0.00022967 549.3009544416318 98.923 0.19639 102.69 102.54 102.74 3.7707 49 26 3 0 0 0 0.61292 1 23472 23472 4.897 0.95262 1 214390 28219 2749 17824 17835 32732 32732 0.04324226500648365 NGVSAAKSKVK 11 Unmodified _NGVSAAKSKVK_ 0 0 0 LTR24C_dup29|chr1:120936439-120936628:+|1.0820228552531814|0.002671726522271|8.66|147.0|10|1|anti-sense LTR24C_dup29|chr1:120936439-120936628:+|1.0820228552531814|0.002671726522271|8.66|147.0|10|1|anti-sense LTR24C_dup29|chr1:120936439-120936628:+|1.0820228552531814|0.002671726522271|8.66|147.0|10|1|anti-sense MSMS UPN48_class_I_Rep_1 5 544.8251342773438 2 544.824755 1087.63496 NaN NaN NaN NaN NaN NaN NaN 89.785 1 93.41 92.91 93.91 3.6255 0 0 0 0.38417 1 21572 21572 2.4985 0.43874 1 28220 15603 17825 17836 32733 32733 0.09464505771666154 NGYFPYYES 9 Unmodified _NGYFPYYES_ 0 0 0 ENST00000518303.5_1_8:18658714-18662398:-|nuORF ENST00000518303.5_1_8:18658714-18662398:-|nuORF ENST00000518303.5_1_8:18658714-18662398:-|nuORF MSMS UPN47_class_I_Rep_2 3 570.2388305664062 2 570.237647 1138.46074 NaN NaN NaN NaN NaN NaN NaN 44.782 1 48.137 47.637 48.637 3.3556 0 0 0 0.39518 1 9373 9373 1.8442 0.19162 1 28221 7214 17826 17837 32734 32734 -0.10295119444322154 NGYSKELKF 9 Unmodified _NGYSKELKF_ 0 0 0 REV__nc|ENSG00000253159|O60330-2|PCDHGA12 REV__nc|ENSG00000253159|O60330-2|PCDHGA12 MULTI-MSMS UPN48_class_I_Rep_1 5 543.2850341796875 2 543.284931 1084.55531 0.42352 0.00023009 -0.16312 -8.862E-05 0.2604 0.00014147 543.284783007111 42.419 1.134 45.927 45.59 46.724 3.5079 255 96 4 0 0 0 0.037922 3 7857 7818;7857;7896 53.833 10.06 1 1089900 + 28222 21360 17827 17838 32735;32736;32737 32736 0.016414390976706272 NGYSKELKF 9 Unmodified _NGYSKELKF_ 0 0 0 REV__nc|ENSG00000253159|O60330-2|PCDHGA12 REV__nc|ENSG00000253159|O60330-2|PCDHGA12 MULTI-MSMS UPN48_class_I_Rep_2 6 543.2850341796875 2 543.284931 1084.55531 0.41841 0.00022731 -0.13378 -7.2682E-05 0.28463 0.00015463 543.2847952421597 42.032 1.3945 45.789 45.41 46.805 3.7579 359 133 4 0 0 0 0.037922 5 7747 7644;7712;7747;7785;7821 53.833 10.06 1 1743100 + 28223 21360 17827 17838 32738;32739;32740;32741;32742 32740 0.016414390976706272 NGYSKELKF 9 Unmodified _NGYSKELKF_ 0 0 0 REV__nc|ENSG00000253159|O60330-2|PCDHGA12 REV__nc|ENSG00000253159|O60330-2|PCDHGA12 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 543.284931 1084.55531 0.42073 0.00022857 -0.23089 -0.00012544 0.18983 0.00010313 543.284748355714 42.223 1.1568 45.865 45.513 46.67 3.6415 0.0044797 -6.2766E-05 NaN 53.833 297 101 4 NaN NaN NaN NaN 0 NaN NaN 0 1449200 + 28224 21360 17827 17838 0.016414390976706272 NHAAHHFRM 9 Unmodified _NHAAHHFRM_ 0 0 0 REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|34|3|anti-sense REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_1 5 560.766357421875 2 560.764509 1119.51446 NaN NaN NaN NaN NaN NaN NaN 38.066 1 41.571 41.071 42.071 3.5052 0 0 0 0.39518 1 6547 6547 1.8442 0 1 + 28225 31313 17828 17839 32743 32743 -0.04051180702936108 NHALKVHMH 9 Unmodified _NHALKVHMH_ 0 0 0 L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|35|3|anti-sense L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|35|3|anti-sense L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.78369140625 2 543.78491 1085.55527 NaN NaN NaN NaN NaN NaN NaN 47.922 1 51.271 50.771 51.771 3.3492 0 0 0 0.28335 1 10314 10314 11.64 2.2572 1 28226 12967 17829 17840 32744 32744 0.01591160616681009 NHALKVHMH 9 Unmodified _NHALKVHMH_ 0 0 0 L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|35|3|anti-sense L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|35|3|anti-sense L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_3 4 543.783203125 2 543.78491 1085.55527 NaN NaN NaN NaN NaN NaN NaN 47.592 1 50.832 50.332 51.332 3.2405 0 0 0 0.28335 1 10283 10283 11.64 2.2572 1 28227 12967 17829 17840 32745 32745 0.01591160616681009 NHANNQRRK 9 Unmodified _NHANNQRRK_ 0 0 0 REV__L1ME3Cz_dup4510|chr6:42607755-42608335:-|1.1297047495716537|0.0134656727799087|6.39|151.0|4|1|sense REV__L1ME3Cz_dup4510|chr6:42607755-42608335:-|1.1297047495716537|0.0134656727799087|6.39|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 569.3060302734375 2 569.302844 1136.59114 NaN NaN NaN NaN NaN NaN NaN 32.02 1 35.319 34.819 35.819 3.2991 0 0 0 0.4007 1 5532 5532 0.52476 0 1 + 28228 28119 17830 17841 32746 32746 0.02830334117879829 NHFFYFHF 8 Unmodified _NHFFYFHF_ 0 0 0 L1M3f_dup52|chr1:174910207-174910743:+|1.223475448767396|0.0024910720614851|8.94|150.0|25|1|anti-sense L1M3f_dup52|chr1:174910207-174910743:+|1.223475448767396|0.0024910720614851|8.94|150.0|25|1|anti-sense L1M3f_dup52|chr1:174910207-174910743:+|1.223475448767396|0.0024910720614851|8.94|150.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 579.7614135742188 2 579.761426 1157.5083 NaN NaN NaN NaN NaN NaN NaN 77.841 1 77.841 77.341 78.341 0 0 0 0 0.40798 1 18211 18211 0 0 1 28229 8804 17831 17842 32747 32747 -0.06415375662822953 NHFWFHMN 8 Unmodified _NHFWFHMN_ 0 0 0 L1PA5_dup107|chr1:51474690-51476424:-|1.2939145085216694|0.044437530942752|4.86|151.0|113|3|anti-sense L1PA5_dup107|chr1:51474690-51476424:-|1.2939145085216694|0.044437530942752|4.86|151.0|113|3|anti-sense L1PA5_dup107|chr1:51474690-51476424:-|1.2939145085216694|0.044437530942752|4.86|151.0|113|3|anti-sense MSMS UPN46_class_I_Rep_3 1 566.7425537109375 2 566.742711 1131.47087 NaN NaN NaN NaN NaN NaN NaN 116.48 1 116.48 115.98 116.98 0 0 0 0 0.40746 1 28835 28835 0.69038 0 1 28230 14421 17832 17843 32748 32748 -0.08960790200080737 NHFYCDDMP 9 Unmodified _NHFYCDDMP_ 0 0 0 ENSG00000172199|ENST00000302270|OR8U1 ENSG00000172199|ENST00000302270|OR8U1 ENSG00000172199|ENST00000302270|OR8U1 MSMS UPN47_class_I_Rep_2 3 571.2069091796875 2 571.207509 1140.40047 NaN NaN NaN NaN NaN NaN NaN 119.91 1 123.39 122.89 123.89 3.4793 0 0 0 0.4007 1 29390 29390 0.52476 0 1 28231 4565 17833 17844 32749 32749 -0.16411876370716527 NHITVTGAF 9 Unmodified _NHITVTGAF_ 0 0 0 REV__ENSG00000198205|ENST00000358697|ZXDA REV__ENSG00000198205|ENST00000358697|ZXDA MULTI-MSMS UPN46_class_I_Rep_3 1 480.2509460449219 2 480.250892 958.48723 0.21968 0.0001055 0.043416 2.0851E-05 0.2631 0.00012635 480.25096014678303 39.59 0.56911 39.59 39.338 39.907 0 89 54 2 0 0 0 0.21527 1 7651 7651 19.257 0 1 166740 + 28232 21117 17834 17845 32750 32750 0.006326142376678945 NHKKKQKKQ 9 Unmodified _NHKKKQKKQ_ 0 0 0 REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|151|3|sense REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|151|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.3604125976562 2 583.859464 1165.70437 0.41268 0.00024095 -0.9482 -0.00055362 -0.53552 -0.00031267 583.8586670017747 89.514 0.45852 93.14 92.916 93.375 3.6255 65 48 2 0 0 0 0.50088 1 21521 21521 0.52476 0 1 166110 + 28233 26660 17835 17846 32751 32751 0.1281500951106409 NHKTNDRC 8 Unmodified _NHKTNDRC_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS UPN46_class_I_Rep_3 1 494.2240295410156 2 494.224882 986.435211 NaN NaN NaN NaN NaN NaN NaN 89.045 1 89.045 88.545 89.545 0 0 0 0 0.40625 1 21409 21409 2.3027 0 1 28234 5064 17836 17847 32752 32752 -0.058548724477418546 NHLAKLIRR 9 Unmodified _NHLAKLIRR_ 0 0 0 L1MB3_dup12144|chr12:120876844-120877498:+|1.8842143329030288|0.0108287678791423|7.44|151.0|3|1|sense L1MB3_dup12144|chr12:120876844-120877498:+|1.8842143329030288|0.0108287678791423|7.44|151.0|3|1|sense L1MB3_dup12144|chr12:120876844-120877498:+|1.8842143329030288|0.0108287678791423|7.44|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 560.9714965820312 2 560.856724 1119.69889 NaN NaN NaN NaN NaN NaN NaN 48.714 1 48.714 48.214 49.214 0 0 0 0 0.4007 1 10172 10172 0.52476 0 1 28235 10329 17837 17848 32753 32753 0.1438333071928355 NHLFFFFLQQE 11 Unmodified _NHLFFFFLQQE_ 0 0 0 REV__ENST00000261254.7_1_12:4410574-4410667:+|nuORF REV__ENST00000261254.7_1_12:4410574-4410667:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.57891845703125 3 490.578588 1468.71394 -0.10536 -5.1685E-05 0.50329 0.0002469 0.39793 0.00019522 490.57895830031543 14.059 0.51606 17.447 17.26 17.776 3.3871 93 60 2 0 0 0 0.6756 1 470 470 0.92553 0.51727 1 64017 + 28236 21556 17838 17849 32754 32754 -0.0016726699402624945 NHLHPKEREFY 11 Unmodified _NHLHPKEREFY_ 0 0 0 REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|25|1|sense REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|25|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 490.58087158203125 3 490.580992 1468.72115 0.18944 9.2938E-05 -0.74988 -0.00036788 -0.56044 -0.00027494 490.9150205951409 38.176 0.3806 41.681 41.461 41.842 3.5052 60 32 3 0 0 0 0.67113 1 6617 6617 1.3296 0.11481 1 118250 + 28237 32803 17839 17850 32755 32755 0.005534656063673538 NHLKQWQR 8 Unmodified _NHLKQWQR_ 0 0 0 REV__L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|21|2|sense REV__L1MB7_dup21650|chr20:2883741-2884722:-|1.2782981505402595|0.0288774093976609|5.47|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 555.2997436523438 2 555.301781 1108.58901 NaN NaN NaN NaN NaN NaN NaN 65.667 1 69.146 68.646 69.646 3.4792 0 0 0 0.40625 1 14943 14943 2.3027 0.4585 1 + 28238 26215 17840 17851 32756 32756 0.0390590538008837 NHLLMMYW 8 Unmodified _NHLLMMYW_ 0 0 0 nc|ENSG00000102053|Q5HYM0-2|ZC3H12B nc|ENSG00000102053|Q5HYM0-2|ZC3H12B nc|ENSG00000102053|Q5HYM0-2|ZC3H12B MSMS UPN48_class_I_Rep_2 6 554.259033203125 2 554.259348 1106.50414 NaN NaN NaN NaN NaN NaN NaN 85.558 1 89.264 88.764 89.764 3.7058 0 0 0 0.40738 1 20348 20348 0.79363 0 1 28239 16652 17841 17852 32757 32757 -0.04484924472399143 NHLSSEFH 8 Unmodified _NHLSSEFH_ 0 0 0 THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|67|3|anti-sense THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|67|3|anti-sense THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|67|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 485.7218933105469 2 485.722498 969.430444 0.031038 1.5076E-05 -0.17249 -8.3781E-05 -0.14145 -6.8705E-05 485.7223159158212 30.468 0.71679 30.468 30.114 30.831 0 80 56 2 0 0 0 0.82752 1 5001 5001 4.3292 2.0265 1 99703 28240 32953 17842 17853 32758 32758 -0.05549433318844876 NHLTGEKEAKQ 11 Unmodified _NHLTGEKEAKQ_ 0 0 0 REV__L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|1|1|sense REV__L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 627.82421875 2 627.825483 1253.63641 NaN NaN NaN NaN NaN NaN NaN 29.261 1 32.585 32.085 33.085 3.3235 0 0 0 0.38417 1 4705 4705 1.1933 0.59184 1 + 28241 26171 17843 17854 32759 32759 0.019740950697496373 NHMDDNDGE 9 Unmodified _NHMDDNDGE_ 0 0 0 nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC nc|ENSG00000134982|P25054-2|APC nc|ENSG00000134982|P25054-2|APC MSMS UPN47_class_I_Rep_1 2 523.6775512695312 2 523.677627 1045.3407 NaN NaN NaN NaN NaN NaN NaN 95.376 1 99.141 98.641 99.641 3.7648 0 0 0 0.4029 1 23677 23677 0 0 1 28242 2879 17844 17855 32760 32760 -0.18015475780407542 NHMIPHLP 8 Unmodified _NHMIPHLP_ 0 0 0 REV__ENST00000533658.5_1_11:16339950-16362794:-|nuORF REV__ENST00000533658.5_1_11:16339950-16362794:-|nuORF MSMS UPN46_class_I_Rep_3 1 479.7663879394531 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 113.3 1 113.3 112.8 113.8 0 0 0 0 0.40738 1 27983 27983 0.79363 0 1 + 28243 18435 17845 17856 32761 32761 0.005012819480612052 NHMIPHLP 8 Unmodified _NHMIPHLP_ 0 0 0 REV__ENST00000533658.5_1_11:16339950-16362794:-|nuORF REV__ENST00000533658.5_1_11:16339950-16362794:-|nuORF MSMS UPN46_class_I_Rep_3 1 479.7497863769531 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 113.94 1 113.94 113.44 114.44 0 0 0 0 0.40581 1 28150 28150 2.8892 0 1 + 28244 18435 17845 17856 32762 32762 0.005012819480612052 NHNRRQAMLQ 10 Unmodified _NHNRRQAMLQ_ 0 0 0 REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|43|3|sense REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|43|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 634.3256225585938 2 634.325462 1266.63637 0.45514 0.00028871 -0.21738 -0.00013789 0.23776 0.00015082 634.3251800621464 52.832 0.47339 56.351 56.071 56.544 3.5192 44 35 2 0 0 0 0.56333 1 11082 11082 1.4819 0 1 149250 + 28245 28572 17846 17857 32763 32763 0.013718165887667055 NHPNRNLTL 9 Unmodified _NHPNRNLTL_ 0 0 0 REV__THE1D_dup3021|chr4:53254157-53254481:+|1.1539150317676572|0.0094912276865967|6.93|151.0|1|1|sense REV__THE1D_dup3021|chr4:53254157-53254481:+|1.1539150317676572|0.0094912276865967|6.93|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 539.7922973632812 2 539.791247 1077.56794 0.42021 0.00022682 1.8133 0.00097881 2.2335 0.0012056 539.7921448039181 77.793 0.52357 81.222 80.95 81.474 3.4289 74 49 2 0 0 0 0.097406 3 19310 19273;19310;19355 34.402 3.1639 1 115750 + 28246 32298 17847 17858 32764;32765;32766 32765 0.03225895280547775 NHPNRNLTL 9 Unmodified _NHPNRNLTL_ 0 0 0 REV__THE1D_dup3021|chr4:53254157-53254481:+|1.1539150317676572|0.0094912276865967|6.93|151.0|1|1|sense REV__THE1D_dup3021|chr4:53254157-53254481:+|1.1539150317676572|0.0094912276865967|6.93|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 539.7928466796875 2 539.791247 1077.56794 NaN NaN NaN NaN NaN NaN NaN 77.939 1 81.22 80.72 81.72 3.2816 0 0 0 0.20399 1 19419 19419 16.149 2.5342 1 + 28247 32298 17847 17858 32767 32767 0.03225895280547775 NHPNRNLTL 9 Unmodified _NHPNRNLTL_ 0 0 0 REV__THE1D_dup3021|chr4:53254157-53254481:+|1.1539150317676572|0.0094912276865967|6.93|151.0|1|1|sense REV__THE1D_dup3021|chr4:53254157-53254481:+|1.1539150317676572|0.0094912276865967|6.93|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 539.7920532226562 2 539.791247 1077.56794 NaN NaN NaN NaN NaN NaN NaN 78.084 1 81.365 80.865 81.865 3.2816 0 0 0 0.11827 1 19460 19460 21.537 3.1639 1 + 28248 32298 17847 17858 32768 32768 0.03225895280547775 NHQKLSVYV 9 Unmodified _NHQKLSVYV_ 0 0 0 REV__L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|234|2|anti-sense REV__L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|234|2|anti-sense MSMS UPN46_class_I_Rep_3 1 544.2999877929688 2 544.298373 1086.58219 NaN NaN NaN NaN NaN NaN NaN 51.132 1 51.132 50.632 51.632 0 0 0 0 0.39598 1 10847 10847 1.6526 0.17072 1 + 28249 29695 17848 17859 32769 32769 0.042365477088424086 NHRFVFKAAG 10 Unmodified _NHRFVFKAAG_ 0 0 0 REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF MSMS UPN47_class_I_Rep_2 3 573.8107299804688 2 573.811982 1145.60941 NaN NaN NaN NaN NaN NaN NaN 26.525 1 30.02 29.52 30.52 3.4945 0 0 0 0.53105 1 3851 3851 3.2813 1.2216 1 + 28250 19848 17849 17860 32770 32770 0.042430760398929124 NHRHNRRQ 8 Unmodified _NHRHNRRQ_ 0 0 0 REV__L1MB2_dup8279|chr19:29998053-29999703:-|1.3137530075034096|0.0481483825330452|4.77|151.0|20|1|sense REV__L1MB2_dup8279|chr19:29998053-29999703:-|1.3137530075034096|0.0481483825330452|4.77|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 559.296142578125 2 559.295353 1116.57615 NaN NaN NaN NaN NaN NaN NaN 68.128 1 68.128 67.628 68.628 0 0 0 0 0.40746 1 15542 15542 0.69038 0 1 + 28251 25784 17850 17861 32771 32771 0.022528870405494672 NHRLPYPP 8 Unmodified _NHRLPYPP_ 0 0 0 REV__Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|3|1|sense REV__Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.26690673828125 2 497.266876 992.519199 0.22976 0.00011425 -0.027311 -1.3581E-05 0.20245 0.00010067 497.26680431161026 40.193 0.85534 43.934 43.582 44.437 3.7413 167 90 2 0 0 0 0.82752 1 7303 7303 0.79363 0 1 192220 + 28252 32447 17851 17862 32772 32772 0.02264026711452516 NHRSKILKVVS 11 Unmodified _NHRSKILKVVS_ 0 0 0 MER2_dup333|chr1:111168878-111169201:-|1.891233918549052|0.27692481748656|2.77|151.0|5|2|sense MER2_dup333|chr1:111168878-111169201:-|1.891233918549052|0.27692481748656|2.77|151.0|5|2|sense MER2_dup333|chr1:111168878-111169201:-|1.891233918549052|0.27692481748656|2.77|151.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 640.8951416015625 2 640.893503 1279.77245 NaN NaN NaN NaN NaN NaN NaN 52.851 1 56.178 55.678 56.678 3.3266 0 0 0 0.38417 1 11819 11819 1.1933 0.66858 1 28253 15825 17852 17863 32773 32773 0.14375834371094243 NHRSMEQS 8 Unmodified _NHRSMEQS_ 0 0 0 L1MDa_dup2098|chr5:139031034-139032976:-|1.1291404502494764|0.0143690655908486|6.3|151.0|14|1|sense L1MDa_dup2098|chr5:139031034-139032976:-|1.1291404502494764|0.0143690655908486|6.3|151.0|14|1|sense L1MDa_dup2098|chr5:139031034-139032976:-|1.1291404502494764|0.0143690655908486|6.3|151.0|14|1|sense MSMS UPN47_class_I_Rep_3 4 494.7193908691406 2 494.71689 987.419227 NaN NaN NaN NaN NaN NaN NaN 113.16 1 116.67 116.17 117.17 3.5098 0 0 0 0.40625 1 27751 27751 2.3027 1.5091 1 28254 12107 17853 17864 32774 32774 -0.07498578684635504 NHSMFWKHNLR 11 Unmodified _NHSMFWKHNLR_ 0 0 0 REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.57928466796875 3 490.578817 1468.71462 -0.35756 -0.00017541 0.52994 0.00025998 0.17238 8.4564E-05 490.9132057208753 13.918 0.38402 17.375 17.217 17.601 3.457 106 45 4 0 0 0 0.65891 1 437 437 2.4348 1.22 1 100540 + 28255 25485 17854 17865 32775 32775 -0.0009875082598682638 NHSMFWKHNLR 11 Unmodified _NHSMFWKHNLR_ 0 0 0 REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.578857421875 3 490.578817 1468.71462 -0.67206 -0.0003297 0.75606 0.00037091 0.084002 4.121E-05 490.5792823700754 14.075 0.35728 17.445 17.349 17.706 3.3697 80 42 2 0 0 0 0.65891 1 466 466 2.4348 1.22 1 71076 + 28256 25485 17854 17865 32776 32776 -0.0009875082598682638 NHSMFWKHNLR 11 Unmodified _NHSMFWKHNLR_ 0 0 0 REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 490.578817 1468.71462 -0.35756 -0.00017541 0.52994 0.00025998 0.17238 8.4564E-05 490.9132057208753 13.918 0.38402 17.375 17.217 17.601 3.457 -0.046856 0.00010328 NaN 2.4348 106 45 4 NaN NaN NaN NaN 0 NaN NaN 0 100540 + 28257 25485 17854 17865 -0.0009875082598682638 NHSMFWKHNLR 11 Unmodified _NHSMFWKHNLR_ 0 0 0 REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 490.578817 1468.71462 -0.10536 -5.1685E-05 0.037526 1.8409E-05 -0.067829 -3.3276E-05 490.57895830031543 14.059 0.51606 17.447 17.26 17.776 3.3871 0.024411 -0.00062142 NaN 2.4348 93 60 2 NaN NaN NaN NaN 0 NaN NaN 0 64017 + 28258 25485 17854 17865 -0.0009875082598682638 NHSMFWKHNLR 11 Unmodified _NHSMFWKHNLR_ 0 0 0 REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|137|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 490.578817 1468.71462 -0.67206 -0.0003297 0.75606 0.00037091 0.084002 4.121E-05 490.5792823700754 14.075 0.35728 17.445 17.349 17.706 3.3697 0.022445 0.00043608 NaN 2.4348 80 42 2 NaN NaN NaN NaN 0 NaN NaN 0 71076 + 28259 25485 17854 17865 -0.0009875082598682638 NHSRVDPFWHW 11 Unmodified _NHSRVDPFWHW_ 0 0 0 L1M3c_dup680|chrX:132055883-132056673:-|1.4618322240763002|0.0500366420403312|4.87|151.0|41|2|anti-sense L1M3c_dup680|chrX:132055883-132056673:-|1.4618322240763002|0.0500366420403312|4.87|151.0|41|2|anti-sense L1M3c_dup680|chrX:132055883-132056673:-|1.4618322240763002|0.0500366420403312|4.87|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 494.23406982421875 3 494.233815 1479.67962 NaN NaN NaN NaN NaN NaN NaN 12.079 1 15.734 15.234 16.234 3.6552 0 0 0 0.38417 1 15 15 0.094841 0 1 28260 8787 17855 17866 32777 32777 -0.04103670362314915 NHSTLNNFQSR 11 Unmodified _NHSTLNNFQSR_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|136|3|sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|136|3|sense MSMS UPN46_class_I_Rep_3 1 439.88140869140625 3 439.88133 1316.62216 NaN NaN NaN NaN NaN NaN NaN 95.579 1 95.579 95.079 96.079 0 0 0 0 0.38417 1 23211 23211 3.5927 0 1 + 28261 29080 17856 17867 32778 32778 -0.023485573585503516 NHTLITTFNII 11 Unmodified _NHTLITTFNII_ 0 0 0 L1M5_dup23724|chr7:77096620-77097619:+|1.0010001365285677|0.2161969261414938|2.21|151.0|14|2|sense L1M5_dup23724|chr7:77096620-77097619:+|1.0010001365285677|0.2161969261414938|2.21|151.0|14|2|sense L1M5_dup23724|chr7:77096620-77097619:+|1.0010001365285677|0.2161969261414938|2.21|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 643.85888671875 2 643.858795 1285.70304 NaN NaN NaN NaN NaN NaN NaN 56.724 1 60.181 59.681 60.681 3.4572 0 0 0 0.38417 1 12977 12977 0.96228 0 1 28262 9115 17857 17868 32779 32779 0.07161330631652163 NHVARQDNPS 10 Unmodified _NHVARQDNPS_ 0 0 0 Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|65|3|sense Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|65|3|sense Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|65|3|sense MSMS UPN47_class_I_Rep_2 3 569.2714233398438 2 569.273418 1136.53228 NaN NaN NaN NaN NaN NaN NaN 19.406 1 22.802 22.302 23.302 3.3963 0 0 0 0.53105 1 1823 1823 1.3295 0.25807 1 28263 33451 17858 17869 32780 32780 -0.030521869671019886 NHVHVGSNL 9 Unmodified _NHVHVGSNL_ 0 0 0 REV__L1PA6_dup41|chr1:41131561-41133326:-|2.794548126259561|0.0345016317394554|6.34|151.0|85|3|anti-sense REV__L1PA6_dup41|chr1:41131561-41133326:-|2.794548126259561|0.0345016317394554|6.34|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.7513122558594 2 488.75159 975.488627 -0.48912 -0.00023906 -0.35147 -0.00017178 -0.84059 -0.00041084 488.7512043235651 27.512 0.6161 30.854 30.591 31.208 3.3422 78 51 2 0 0 0 0.47493 1 4229 4229 3.2813 0.28607 1 112510 + 28264 29896 17859 17870 32781 32781 -9.751673565006058E-05 NHWHLLAY 8 Unmodified _NHWHLLAY_ 0 0 0 REV__ENSG00000283632|ENST00000413988|EXOC3L2 REV__ENSG00000283632|ENST00000413988|EXOC3L2 MSMS UPN48_class_I_Rep_1 5 527.2654418945312 2 527.266876 1052.5192 NaN NaN NaN NaN NaN NaN NaN 76.768 1 80.278 79.778 80.778 3.5102 0 0 0 0.36148 1 18241 18241 19.439 2.4967 1 + 28265 21452 17860 17871 32782 32782 -0.004959732885254198 NIDAVRVTV 9 Unmodified _NIDAVRVTV_ 0 0 0 REV__ENSG00000166341|ENST00000299441|DCHS1 REV__ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS UPN47_class_I_Rep_2 3 493.7853698730469 2 493.785099 985.555644 0.27573 0.00013615 0.028973 1.4307E-05 0.30471 0.00015046 493.784960047103 50.215 0.56124 53.558 53.351 53.912 3.3431 51 27 3 0 0 0 0.40701 1 11049 11049 7.609 0 1 115020 + 28266 20170 17861 17872 32783 32783 0.06228858817519267 NIDDVVRF 8 Unmodified _NIDDVVRF_ 0 0 0 ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN ENSG00000171862|ENST00000371953|PTEN ENSG00000171862|ENST00000371953|PTEN MULTI-MSMS UPN47_class_I_Rep_1 2 489.2564392089844 2 489.256174 976.497795 0.11762 5.7548E-05 0.063197 3.092E-05 0.18082 8.8468E-05 489.256178568213 55.944 0.69145 59.423 59.184 59.876 3.4785 53 38 2 0 0 0 0.82752 1 12773 12773 20.454 4.6064 1 111150 28267 4550 17862 17873 32784 32784 0.00860596892096055 NIDDVVRF 8 Unmodified _NIDDVVRF_ 0 0 0 ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN ENSG00000171862|ENST00000371953|PTEN ENSG00000171862|ENST00000371953|PTEN MULTI-SECPEP UPN47_class_I_Rep_3 4 489.2560119628906 2 489.256174 976.497795 0.1362 6.6639E-05 -0.11182 -5.471E-05 0.024382 1.1929E-05 489.255936347673 56.416 0.78016 59.589 59.224 60.004 3.1721 60 48 3 0 0 0 0.72333 1 12932 12932 9.3831 2.66 1 100100 28268 4550 17862 17873 32785 32785 0.00860596892096055 NIDEGPLAF 9 Unmodified _NIDEGPLAF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN47_class_I_Rep_1 2 488.24249267578125 2 488.242732 974.470912 0.10996 5.3689E-05 0.2759 0.00013471 0.38586 0.0001884 488.242763371327 68.808 1.2818 72.173 71.36 72.642 3.3646 143 98 3 0 0 0 0.082592 3 16638 16561;16600;16638 37.974 19.839 1 163900 28269 2933 17863 17874 32786;32787;32788 32788 -0.01734511719087095 NIDEGPLAF 9 Unmodified _NIDEGPLAF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN47_class_I_Rep_2 3 488.24261474609375 2 488.242732 974.470912 0.21947 0.00010715 0.051219 2.5007E-05 0.27069 0.00013216 488.2426424180462 68.999 0.77261 72.274 71.919 72.691 3.2746 121 62 3 0 0 0 0.15122 3 16727 16685;16727;16765 25.399 13.906 1 179770 28270 2933 17863 17874 32789;32790;32791 32790 -0.01734511719087095 NIDEGPLAF 9 Unmodified _NIDEGPLAF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS UPN47_class_I_Rep_3 4 488.2427673339844 2 488.242732 974.470912 0.17347 8.4695E-05 0.27383 0.00013369 0.4473 0.00021839 488.2426360196898 69.005 0.94585 72.209 71.844 72.79 3.2044 130 74 3 0 0 0 0.15122 3 16806 16769;16806;16852 25.399 13.906 1 168510 28271 2933 17863 17874 32792;32793;32794 32793 -0.01734511719087095 NIDSAKECVTF 11 Unmodified _NIDSAKECVTF_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS UPN48_class_I_Rep_2 6 614.2923583984375 2 613.789721 1225.56489 0.59877 0.00036752 0.65055 0.0003993 1.2493 0.00076682 614.2917632642655 56.905 0.37394 60.439 60.267 60.641 3.5333 52 34 2 0 0 0 0.67264 1 12248 12248 1.1933 0.12188 1 74738 28272 3333 17864 17875 32795 32795 -0.03887160679119006 NIEEEQRVV 9 Unmodified _NIEEEQRVV_ 0 0 0 REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|44|1|sense REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|44|1|sense MSMS UPN48_class_I_Rep_3 7 558.2877197265625 2 558.288202 1114.56185 NaN NaN NaN NaN NaN NaN NaN 15.534 1 19.074 18.574 19.574 3.5392 0 0 0 0.4007 1 622 622 0.52476 0 1 + 28273 30167 17865 17876 32796 32796 0.00915332258387025 NIEISGNRR 9 Unmodified _NIEISGNRR_ 0 0 0 Tigger1_dup5379|chr7:140902029-140902650:+|1.354483007262144|0.0090691005713168|7.22|151.0|33|2|anti-sense Tigger1_dup5379|chr7:140902029-140902650:+|1.354483007262144|0.0090691005713168|7.22|151.0|33|2|anti-sense Tigger1_dup5379|chr7:140902029-140902650:+|1.354483007262144|0.0090691005713168|7.22|151.0|33|2|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7901611328125 2 529.788704 1057.56285 NaN NaN NaN NaN NaN NaN NaN 82.117 1 85.629 85.129 86.129 3.5122 0 0 0 0.38916 1 20513 20513 3.2813 0 1 28274 33122 17866 17877 32797 32797 0.03637591417941621 NIELEEEYRKF 11 Unmodified _NIELEEEYRKF_ 0 0 0 REV__ENSG00000145833|ENST00000452510|DDX46 REV__ENSG00000145833|ENST00000452510|DDX46 MULTI-MSMS UPN48_class_I_Rep_1 5 490.5808410644531 3 490.580546 1468.71981 0.18944 9.2938E-05 0.15884 7.7924E-05 0.34828 0.00017086 490.9150205951409 38.176 0.3806 41.681 41.461 41.842 3.5052 60 32 3 0 0 0 0.66092 1 6533 6533 2.2527 1.0379 1 118250 + 28275 19524 17867 17878 32798 32798 0.00419786726934035 NIELNNRLA 9 Unmodified _NIELNNRLA_ 0 0 0 REV__ENSG00000183665|ENST00000328599|TRMT12 REV__ENSG00000183665|ENST00000328599|TRMT12 MULTI-MSMS UPN47_class_I_Rep_3 4 528.7933959960938 2 528.793455 1055.57236 -0.23783 -0.00012576 0.29267 0.00015476 0.05484 2.8999E-05 528.7935218224331 31.201 0.61245 34.5 34.28 34.892 3.2991 84 50 2 0 0 0 0.37599 1 5338 5338 9.3831 1.2276 1 98043 + 28276 20793 17868 17879 32799 32799 0.04679359703482078 NIEPFCPSFL 10 Unmodified _NIEPFCPSFL_ 0 0 0 REV__Tigger6a_dup191|chr4:74175618-74176785:-|1.1130163574776335|0.1555402791712125|2.84|150.0|18|2|sense REV__Tigger6a_dup191|chr4:74175618-74176785:-|1.1130163574776335|0.1555402791712125|2.84|150.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 583.7796630859375 2 583.781167 1165.54778 0.43712 0.00025518 -0.1532 -8.9433E-05 0.28393 0.00016575 583.7809145359771 65.698 0.50403 68.878 68.685 69.189 3.1795 39 28 2 0 0 0 0.55448 1 15847 15847 4.897 1.3005 1 75781 + 28277 32799 17869 17880 32800 32800 -0.028370364942475135 NIFFKNKLVA 10 Unmodified _NIFFKNKLVA_ 0 0 0 REV__L1ME4b_dup3809|chr3:47073682-47074181:+|1.7038368617096995|0.1145516041710196|3.89|151.0|15|2|sense REV__L1ME4b_dup3809|chr3:47073682-47074181:+|1.7038368617096995|0.1145516041710196|3.89|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.8579711914062 2 597.355691 1192.69683 0.45155 0.00026974 -0.2532 -0.00015125 0.19836 0.00011849 597.8562120950553 83.482 0.57435 87.021 86.548 87.122 3.5386 85 58 2 0 0 0 0.56333 1 20830 20830 1.4819 0.8804 1 64736 + 28278 28296 17870 17881 32801 32801 0.10818857190793096 NIFMETKT 8 Unmodified _NIFMETKT_ 0 0 0 REV__L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|12|2|sense REV__L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|12|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 491.796142578125 2 492.24696 982.479368 0.16884 8.3112E-05 1.4689 0.00072306 1.6377 0.00080617 492.2467988115308 47.569 0.11346 51.305 51.255 51.369 3.7361 10 7 2 0 0 0 0.72333 1 9406 9406 2.3027 0 1 68232 + 28279 28034 17871 17882 32802 32802 -0.012572810741062312 NIFQDAELL 9 Unmodified _NIFQDAELL_ 0 0 0 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 MULTI-MSMS UPN46_class_I_Rep_3 1 531.7770385742188 2 531.776939 1061.53933 0.32399 0.00017229 -0.006351 -3.3773E-06 0.31764 0.00016891 531.7770259345385 81.232 0.40453 81.232 80.987 81.391 0 62 42 3 0 0 0 0.1249 1 19173 19173 29.082 1.4528 1 202950 28280 2311 17872 17883 32803 32803 0.011017328607522359 NIFQDAELL 9 Unmodified _NIFQDAELL_ 0 0 0 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 MULTI-MSMS UPN47_class_I_Rep_3 4 531.777099609375 2 531.776939 1061.53933 0.41179 0.00021898 -0.4713 -0.00025063 -0.059513 -3.1648E-05 531.776788971963 76.36 0.7674 79.617 79.283 80.051 3.2573 188 78 4 0 0 0 0.097406 1 19034 19034 34.402 2.0962 1 463140 28281 2311 17872 17883 32804 32804 0.011017328607522359 NIFRKYKK 8 Unmodified _NIFRKYKK_ 0 0 0 ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense MSMS UPN46_class_I_Rep_3 1 548.8348999023438 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 23.476 1 23.476 22.976 23.976 0 0 0 0 0.40746 1 2950 2950 0.69038 0 1 28282 7734 17873 17884 32805 32805 0.11129721222141598 NIFRKYKK 8 Unmodified _NIFRKYKK_ 0 0 0 ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense MSMS UPN47_class_I_Rep_2 3 548.8350830078125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 115.12 1 118.62 118.12 119.12 3.5039 0 0 0 0.40746 1 28059 28059 0.69038 0 1 28283 7734 17873 17884 32806 32806 0.11129721222141598 NIFRKYKK 8 Unmodified _NIFRKYKK_ 0 0 0 ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|97|2|anti-sense MSMS UPN47_class_I_Rep_3 4 548.8349609375 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 116.14 1 119.6 119.1 120.1 3.462 0 0 0 0.40746 1 28572 28572 0.69038 0 1 28284 7734 17873 17884 32807 32807 0.11129721222141598 NIGSLYLSTF 10 Unmodified _NIGSLYLSTF_ 0 0 0 REV__L1MD1_dup262|chr1:192179413-192180040:+|1.3002739017270453|0.0432056984026436|4.91|151.0|51|3|anti-sense REV__L1MD1_dup262|chr1:192179413-192180040:+|1.3002739017270453|0.0432056984026436|4.91|151.0|51|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 557.2711791992188 2 557.792589 1113.57063 0.36159 0.00020169 -0.6057 -0.00033785 -0.24411 -0.00013616 557.7924407499701 66.394 0.20235 69.752 69.671 69.873 3.3576 14 10 2 0 0 0 0.84575 1 15917 15917 3.2813 0 1 76560 + 28285 27310 17874 17885 32808 32808 0.018383058948302278 NIHIHLIL 8 Unmodified _NIHIHLIL_ 0 0 0 ENST00000567224.1_1_15:53809574-53809730:-|nuORF ENST00000567224.1_1_15:53809574-53809730:-|nuORF ENST00000567224.1_1_15:53809574-53809730:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.8033752441406 2 486.803094 971.591636 NaN NaN NaN NaN NaN NaN NaN 66.095 1 69.453 68.953 69.953 3.3576 0 0 0 0.40625 1 15810 15810 2.3027 0 1 28286 7495 17875 17886 32809 32809 0.10470360785052435 NIHISLGLY 9 Unmodified _NIHISLGLY_ 0 0 0 Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|105|3|anti-sense Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|105|3|anti-sense Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|105|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.2899169921875 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 44.881 1 44.881 44.381 45.381 0 0 0 0 0.25702 1 9079 9079 13.042 1.4022 1 28287 33376 17876 17887 32810 32810 0.05234046822897653 NIHKVMIM 8 Unmodified _NIHKVMIM_ 0 0 0 LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense LTR102_Mam_dup267|chr8:102242688-102243144:-|1.1294177174016164|0.2023967733013472|2.48|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.26910400390625 2 493.269716 984.524878 -0.2978 -0.0001469 -0.92064 -0.00045413 -1.2184 -0.00060102 493.2692341140589 28.566 0.50035 32.332 32.053 32.554 3.7662 59 44 2 0 0 0 0.82752 1 4390 4390 0.69038 0 1 47557 28288 15508 17877 17888 32811 32811 0.03199665907277449 NIHPIYNI 8 Unmodified _NIHPIYNI_ 0 0 0 nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1 nc|ENSG00000111615|Q13601-2|KRR1 nc|ENSG00000111615|Q13601-2|KRR1 MSMS UPN47_class_I_Rep_2 3 492.2696228027344 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 65.2 1 68.456 67.956 68.956 3.2556 0 0 0 0.40625 1 15584 15584 2.3027 0 1 28289 1976 17878 17889 32812 32812 0.03165491134382137 NIHWRKEH 8 Unmodified _NIHWRKEH_ 0 0 0 L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|107|3|sense L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|107|3|sense L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|107|3|sense MSMS UPN47_class_I_Rep_1 2 560.2942504882812 2 560.293956 1118.57336 NaN NaN NaN NaN NaN NaN NaN 28.87 1 32.628 32.128 33.128 3.7578 0 0 0 0.40746 1 4507 4507 0.69038 0 1 28290 8660 17879 17890 32813 32813 0.018816188630580655 NIIELVHQV 9 Unmodified _NIIELVHQV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 532.8084106445312 2 532.808574 1063.60259 0.28272 0.00015063 0.19416 0.00010345 0.47688 0.00025409 532.8085891349551 67.269 0.282 67.269 67.094 67.376 0 53 27 3 0 0 0 0.014369 2 15275 15275;15316 67.081 32.679 1 2359300 28291 4149 17880 17891 32814;32815 32814 0.07333718368658992 NIIELVHQV 9 Unmodified _NIIELVHQV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MSMS UPN46_class_I_Rep_3 1 532.80859375 2 532.808574 1063.60259 NaN NaN NaN NaN NaN NaN NaN 67.438 1 67.438 66.938 67.938 0 0 0 0 0.039693 1 15354 15354 40.725 6.3232 1 28292 4149 17880 17891 32816 32816 0.07333718368658992 NIIELVHQV 9 Unmodified _NIIELVHQV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MSMS UPN46_class_I_Rep_3 1 532.8086547851562 2 532.808574 1063.60259 NaN NaN NaN NaN NaN NaN NaN 67.911 1 67.911 67.411 68.411 0 0 0 0 0.25702 1 15480 15480 13.042 0 1 28293 4149 17880 17891 32817 32817 0.07333718368658992 NIIELVHQV 9 Unmodified _NIIELVHQV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 532.808837890625 2 532.808574 1063.60259 0.38068 0.00020283 0.23458 0.00012499 0.61526 0.00032782 532.8086431639032 60.983 1.1495 64.364 64.003 65.152 3.3815 257 91 4 0 0 0 0.0047467 7 14237 14199;14237;14273;14315;14356;14398;14468 114.19 54.113 1 1390400 28294 4149 17880 17891 32818;32819;32820;32821;32822;32823;32824 32819 0.07333718368658992 NIIELVHQV 9 Unmodified _NIIELVHQV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 532.808837890625 2 532.808574 1063.60259 0.32889 0.00017523 0.087297 4.6513E-05 0.41618 0.00022175 532.8085528793614 61.365 1.4228 64.631 64.197 65.619 3.2654 233 102 4 0 0 0 0.014506 7 14391 14314;14352;14391;14434;14475;14515;14558 103.82 52.194 1 1969700 28295 4149 17880 17891 32825;32826;32827;32828;32829;32830;32831 32827 0.07333718368658992 NIIELVHQV 9 Unmodified _NIIELVHQV_ 0 0 0 SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant SYK|p.Q570Pfs*11|1|0.06|ENSG00000165025|chr9:90887874-90887875|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 532.8087158203125 2 532.808574 1063.60259 0.34562 0.00018415 0.065948 3.5138E-05 0.41157 0.00021929 532.808546288943 61.338 1.4774 64.503 64.19 65.667 3.1651 248 112 4 0 0 0 0.0071659 8 14477 14394;14433;14477;14515;14557;14599;14650;14689 136.39 58.243 1 1457800 28296 4149 17880 17891 32832;32833;32834;32835;32836;32837;32838;32839 32834 0.07333718368658992 NIIHRINRTK 10 Unmodified _NIIHRINRTK_ 0 0 0 L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|38|1|sense L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|38|1|sense L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|38|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 421.7584228515625 3 422.258072 1263.75239 -0.28367 -0.00011978 3.3777 0.0014263 3.0941 0.0013065 422.2595149858485 24.297 0.094601 24.297 24.25 24.344 0 15 10 2 0 0 0 0.84575 1 3168 3168 1.5923 0.72791 1 36947 28297 14612 17881 17892 32840 32840 0.13106083431102888 NIIIKRMVKRF 11 Unmodified _NIIIKRMVKRF_ 0 0 0 REV__L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense REV__L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|102|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.299560546875 3 473.298991 1416.87514 0.28848 0.00013654 0.42806 0.0002026 0.71654 0.00033914 473.29911248146 103.04 0.21964 106.57 106.41 106.63 3.5231 44 30 2 0 0 0 0.68478 1 25045 25045 0.094841 0 1 176940 + 28298 27497 17882 17893 32841 32841 0.18338203838175104 NIIMLWFCFDE 11 Unmodified _NIIMLWFCFDE_ 0 0 0 REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|252|1|anti-sense REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|252|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 477.7154235839844 3 477.554286 1429.64103 0.098383 4.6983E-05 -2.7592 -0.0013177 -2.6608 -0.0012707 477.8860612772489 34.476 0.22653 34.476 34.421 34.647 0 18 16 2 0 0 0 22.551 1 6163 6163 0.094841 0 1 63875 + 28299 23792 17883 17894 32842 32842 -0.056604801033699914 NIIRETSSFY 10 Unmodified _NIIRETSSFY_ 0 0 0 REV__L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|42|3|sense REV__L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|42|3|sense MSMS UPN47_class_I_Rep_2 3 615.31298828125 2 615.311677 1228.6088 NaN NaN NaN NaN NaN NaN NaN 73.179 1 76.476 75.976 76.976 3.2971 0 0 0 0.53105 1 17979 17979 6.2058 0.47393 1 + 28300 27552 17884 17895 32843 32843 0.003641918095354413 NIISHYGNKI 10 Unmodified _NIISHYGNKI_ 0 0 0 L1MB8_dup14244|chr17:5396221-5396918:-|1.1452601270383036|0.061842723940143|4.21|151.0|12|2|sense L1MB8_dup14244|chr17:5396221-5396918:-|1.1452601270383036|0.061842723940143|4.21|151.0|12|2|sense L1MB8_dup14244|chr17:5396221-5396918:-|1.1452601270383036|0.061842723940143|4.21|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 579.8161010742188 2 579.81693 1157.61931 NaN NaN NaN NaN NaN NaN NaN 32.68 1 36.37 35.87 36.87 3.6896 0 0 0 0.53105 1 4996 4996 1.3295 0 1 28301 10948 17885 17896 32844 32844 0.0468021925460107 NIIWFHSH 8 Unmodified _NIIWFHSH_ 0 0 0 L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|58|3|sense L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|58|3|sense L1MA4_dup1893|chr3:121878275-121880139:-|2.6768476407739428|0.0744892351841648|5.17|151.0|58|3|sense MSMS UPN47_class_I_Rep_2 3 527.2680053710938 2 527.266876 1052.5192 NaN NaN NaN NaN NaN NaN NaN 27.953 1 31.452 30.952 31.952 3.4986 0 0 0 0.40604 1 4270 4270 2.5775 0 1 28302 9656 17886 17897 32845 32845 -0.004959732885254198 NIKARIKI 8 Unmodified _NIKARIKI_ 0 0 0 REV__L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|18|3|sense REV__L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.323974609375 2 478.324194 954.633835 -0.36378 -0.000174 -0.12971 -6.2045E-05 -0.49349 -0.00023605 478.32416065195093 19.396 1.0571 23.008 22.571 23.628 3.6118 191 122 2 0 0 0 0.82752 1 1814 1814 4.756 0 1 73254 + 28303 25640 17887 17898 32846 32846 0.15470336193402545 NIKEIDVDGW 10 Unmodified _NIKEIDVDGW_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS UPN47_class_I_Rep_1 2 594.7982788085938 2 594.798403 1187.58225 0.31124 0.00018512 -0.16997 -0.0001011 0.14127 8.4025E-05 594.7981781239274 52.574 1.2488 56.132 55.772 57.021 3.5585 206 88 4 0 0 0 0.52083 2 11648 11648;11769 9.3831 1.2276 1 1187200 + 28304 18816 17888 17899 32847;32848 32847 -0.0040349708181111055 NIKIHRNPK 9 Unmodified _NIKIHRNPK_ 0 0 0 REV__L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|8|1|sense REV__L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 560.343505859375 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 78.803 1 82.338 81.838 82.838 3.5352 0 0 0 0.39518 1 18790 18790 1.8442 0 1 + 28305 24242 17889 17900 32849 32849 0.11267337965296065 NIKKAIRL 8 Unmodified _NIKKAIRL_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;ENST00000309900.11_1_16:70928350-70955090:-|nuORF ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS UPN47_class_I_Rep_2 3 478.3236083984375 2 478.324194 954.633835 -0.24238 -0.00011593 -0.36224 -0.00017327 -0.60462 -0.0002892 478.3241044265894 20.059 0.68513 23.455 22.975 23.66 3.3963 124 69 2 0 0 0 0.82752 2 1980 1980;2019 7.9102 0 1 61308 28306 3761 17890 17901 32850;32851 32850 0.15470336193402545 NIKKFIVKLFI 11 Unmodified _NIKKFIVKLFI_ 0 0 0 REV__L1MB8_dup15758|chr20:35026516-35028206:-|4.939176481929623|0.3626185084339944|3.77|151.0|3|1|sense REV__L1MB8_dup15758|chr20:35026516-35028206:-|4.939176481929623|0.3626185084339944|3.77|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 454.9382019042969 3 454.967236 1361.87988 0.090322 4.1094E-05 0.67899 0.00030892 0.76931 0.00035001 455.30182164479464 42.308 0.6461 45.949 45.848 46.494 3.6415 80 49 3 0 0 0 22.551 1 7852 7852 0.094841 0 1 193730 + 28307 26385 17891 17902 32852 32852 0.2134141125259248 NIKKPVVFL 9 Unmodified _NIKKPVVFL_ 0 0 0 L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|36|2|sense L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|36|2|sense L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|36|2|sense MSMS UPN48_class_I_Rep_2 6 529.3440551757812 2 529.342052 1056.66955 NaN NaN NaN NaN NaN NaN NaN 76.987 1 80.599 80.099 81.099 3.6116 0 0 0 0.4007 1 18198 18198 0.52476 0 1 28308 9735 17892 17903 32853 32853 0.14348373650409485 NIKLNQAEF 9 Unmodified _NIKLNQAEF_ 0 0 0 ERVL-E-int_dup5073|chr9:88399921-88400470:+|1.2072361338045117|0.1837158030128469|2.72|151.0|15|2|sense ERVL-E-int_dup5073|chr9:88399921-88400470:+|1.2072361338045117|0.1837158030128469|2.72|151.0|15|2|sense ERVL-E-int_dup5073|chr9:88399921-88400470:+|1.2072361338045117|0.1837158030128469|2.72|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.7903442382812 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.21527 1 12349 12349 19.257 2.1441 1 312930 28309 7757 17893 17904 32854 32854 0.03144841471953441 NIKLNQAEF 9 Unmodified _NIKLNQAEF_ 0 0 0 ERVL-E-int_dup5073|chr9:88399921-88400470:+|1.2072361338045117|0.1837158030128469|2.72|151.0|15|2|sense ERVL-E-int_dup5073|chr9:88399921-88400470:+|1.2072361338045117|0.1837158030128469|2.72|151.0|15|2|sense ERVL-E-int_dup5073|chr9:88399921-88400470:+|1.2072361338045117|0.1837158030128469|2.72|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 538.7909545898438 2 538.790381 1075.56621 0.46808 0.0002522 -1.6932 -0.00091226 -1.2251 -0.00066006 538.790083726859 55.198 1.4163 58.508 57.779 59.195 3.3102 142 78 4 0 0 0 0.15122 1 12451 12451 25.399 2.663 1 318790 28310 7757 17893 17904 32855 32855 0.03144841471953441 NIKNVTVVKM 10 Unmodified _NIKNVTVVKM_ 0 0 0 Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|14|3|sense Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|14|3|sense Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 573.22216796875 2 573.339184 1144.66381 NaN NaN NaN NaN NaN NaN NaN 39.791 1 39.791 39.291 40.291 0 0 0 0 0.53105 1 7674 7674 1.3295 0 1 28311 492 17894 17905 32856 32856 0.09726907076446878 NIKPMIEY 8 Unmodified _NIKPMIEY_ 0 0 0 L1MEg_dup12771|chr16:74387294-74387501:-|3.1757265710157205|0.0587852041707857|5.76|151.0|1|1|sense;L1MEg_dup12630|chr16:28460923-28461312:+|1.3898992413271567|0.0621011691329649|4.48|151.0|1|1|sense;L1MEg_dup12559|chr16:11931751-11931964:+|5.94933911205415|0.1966165561001193|4.92|150.0|1|1|sense L1MEg_dup12771|chr16:74387294-74387501:-|3.1757265710157205|0.0587852041707857|5.76|151.0|1|1|sense L1MEg_dup12771|chr16:74387294-74387501:-|3.1757265710157205|0.0587852041707857|5.76|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 504.2651672363281 2 504.265153 1006.51575 0.31277 0.00015772 -0.23021 -0.00011608 0.082562 4.1633E-05 504.2650693916389 75.944 0.9929 79.527 79.095 80.088 3.5831 316 111 5 0 0 0 0.82752 2 17876 17876;17936 9.3474 9.3474 1 1223200 28312 13362 17895 17906 32857;32858 32857 0.012755958225966424 NIKVIVDF 8 Unmodified _NIKVIVDF_ 0 0 0 REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|3|1|sense REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 474.2823181152344 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.13 1 112.73 112.23 113.23 3.6046 0 0 0 0.40604 1 26890 26890 2.5775 0 1 + 28313 26238 17896 17907 32859 32859 0.07335545936962262 NIKVIVDF 8 Unmodified _NIKVIVDF_ 0 0 0 REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|3|1|sense REV__L1MB7_dup2592|chr2:98527073-98528795:+|2.4521662456389506|0.0815399863154261|4.91|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 474.282470703125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.19 1 112.86 112.36 113.36 3.6715 0 0 0 0.40604 1 25980 25980 2.5775 0 1 + 28314 26238 17896 17907 32860 32860 0.07335545936962262 NILDNFYCD 9 Unmodified _NILDNFYCD_ 0 0 0 ENSG00000255713|ENST00000545221|OR4D2;ENSG00000141194|ENST00000268912|OR4D1 ENSG00000255713|ENST00000545221|OR4D2 ENSG00000255713|ENST00000545221|OR4D2 MULTI-MSMS UPN47_class_I_Rep_2 3 558.7380981445312 2 558.736957 1115.45936 0.48634 0.00027174 2.1041 0.0011756 2.5904 0.0014474 558.7384175540312 60.387 0.19392 63.653 63.598 63.792 3.2654 17 12 3 0 0 0 0.49026 1 14160 14160 1.6526 0.85899 1 179810 28315 3208 17897 17908 32861 32861 -0.09375076804735727 NILLVLIIP 9 Unmodified _NILLVLIIP_ 0 0 0 REV__nc|ENSG00000106113|Q13324-6|CRHR2 REV__nc|ENSG00000106113|Q13324-6|CRHR2 MULTI-MSMS UPN46_class_I_Rep_3 1 504.80902099609375 2 504.346803 1006.67905 0.23671 0.00011938 2.6295 0.0013262 2.8662 0.0014456 504.34773365893676 38.318 0.061085 38.318 38.274 38.335 0 6 4 2 0 0 0 0.50088 1 7280 7280 0.52476 0 1 88173 + 28316 18317 17898 17909 32862 32862 0.175981419359573 NILLVLIMP 9 Unmodified _NILLVLIMP_ 0 0 0 REV__nc|ENSG00000263715|P34998-5|CRHR1 REV__nc|ENSG00000263715|P34998-5|CRHR1 MSMS UPN48_class_I_Rep_2 6 512.843994140625 2 513.325014 1024.63547 NaN NaN NaN NaN NaN NaN NaN 59.98 1 63.467 62.967 63.967 3.4868 0 0 0 0.39326 1 13205 13205 2.3027 0 1 + 28317 18699 17899 17910 32863 32863 0.12414209167172885 NILLYLYSTF 10 Unmodified _NILLYLYSTF_ 0 0 0 L1MB3_dup6947|chr7:116894528-116894979:-|1.0406467338928982|0.0272876732454989|5.25|151.0|24|1|anti-sense L1MB3_dup6947|chr7:116894528-116894979:-|1.0406467338928982|0.0272876732454989|5.25|151.0|24|1|anti-sense L1MB3_dup6947|chr7:116894528-116894979:-|1.0406467338928982|0.0272876732454989|5.25|151.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 416.2275695800781 3 416.228785 1245.66453 NaN NaN NaN NaN NaN NaN NaN 69.168 1 69.168 68.668 69.668 0 0 0 0 0.53105 1 15836 15836 1.9064 0.1641 1 28318 10448 17900 17911 32864 32864 0.0515202499714178 NILNVQAPK 9 Unmodified _NILNVQAPK_ 0 0 0 REV__ENSG00000277481|ENST00000620267|PKD1L3 REV__ENSG00000277481|ENST00000620267|PKD1L3 MSMS UPN47_class_I_Rep_1 2 498.75885009765625 2 498.795466 995.57638 NaN NaN NaN NaN NaN NaN NaN 42.277 1 45.956 45.456 46.456 3.6792 0 0 0 0.39518 1 8578 8578 1.8442 0 1 + 28319 21439 17901 17912 32865 32865 0.07841449197178463 NILPYLYVTL 10 Unmodified _NILPYLYVTL_ 0 0 0 REV__L1MA4_dup5225|chr9:19100450-19101236:+|2.832883398980465|0.170681405785271|4.05|151.0|54|3|anti-sense REV__L1MA4_dup5225|chr9:19100450-19101236:+|2.832883398980465|0.170681405785271|4.05|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 604.84765625 2 604.849907 1207.68526 NaN NaN NaN NaN NaN NaN NaN 71.07 1 74.445 73.945 74.945 3.3751 0 0 0 0.53105 1 17307 17307 1.4819 0 1 + 28320 25181 17902 17913 32866 32866 0.08972615376796966 NILTILSLLTL 11 Unmodified _NILTILSLLTL_ 0 0 0 L1MEc_dup15538|chr15:30762871-30764437:+|1.891233918549052|0.0838244805035903|4.5|151.0|80|2|anti-sense L1MEc_dup15538|chr15:30762871-30764437:+|1.891233918549052|0.0838244805035903|4.5|151.0|80|2|anti-sense L1MEc_dup15538|chr15:30762871-30764437:+|1.891233918549052|0.0838244805035903|4.5|151.0|80|2|anti-sense MSMS UPN47_class_I_Rep_1 2 405.27386474609375 3 405.263718 1212.76933 NaN NaN NaN NaN NaN NaN NaN 42.465 1 46.144 45.644 46.644 3.6792 0 0 0 0.38417 1 8635 8635 0.40827 0 1 28321 13035 17903 17914 32867 32867 0.17145146473717432 NILVHYINDI 10 Unmodified _NILVHYINDI_ 0 0 0 ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|63|3|sense ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|63|3|sense ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|63|3|sense MSMS UPN48_class_I_Rep_1 5 607.3298950195312 2 607.332413 1212.65027 NaN NaN NaN NaN NaN NaN NaN 54.427 1 57.941 57.441 58.441 3.5143 0 0 0 0.53105 1 11523 11523 3.2813 0.28607 1 28322 7729 17904 17915 32868 32868 0.0524537256885651 NIMKMTLLP 9 Unmodified _NIMKMTLLP_ 0 0 0 L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|77|2|sense L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|77|2|sense L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|77|2|sense MSMS UPN48_class_I_Rep_2 6 530.7991333007812 2 530.798306 1059.58206 NaN NaN NaN NaN NaN NaN NaN 81.666 1 85.322 84.822 85.822 3.6567 0 0 0 0.17222 1 19392 19392 18.146 0 1 28323 14650 17905 17916 32869 32869 0.05465088393020778 NIMLAVGLSW 10 Unmodified _NIMLAVGLSW_ 0 0 0 L1PA16_dup12857|chr18:2735080-2737393:+|3.367683331606745|0.2593542722056718|3.7|151.0|102|1|anti-sense L1PA16_dup12857|chr18:2735080-2737393:+|3.367683331606745|0.2593542722056718|3.7|151.0|102|1|anti-sense L1PA16_dup12857|chr18:2735080-2737393:+|3.367683331606745|0.2593542722056718|3.7|151.0|102|1|anti-sense MSMS UPN48_class_I_Rep_3 7 552.2977294921875 2 552.299527 1102.5845 NaN NaN NaN NaN NaN NaN NaN 63.112 1 66.621 66.121 67.121 3.5091 0 0 0 0.53105 1 14084 14084 5.7319 1.4026 1 28324 14046 17906 17917 32870 32870 0.037312601223220554 NIMWVYLW 8 Unmodified _NIMWVYLW_ 0 0 0 Tigger6a_dup191|chr4:74175618-74176785:-|1.1130163574776335|0.1555402791712125|2.84|150.0|54|1|anti-sense Tigger6a_dup191|chr4:74175618-74176785:-|1.1130163574776335|0.1555402791712125|2.84|150.0|54|1|anti-sense Tigger6a_dup191|chr4:74175618-74176785:-|1.1130163574776335|0.1555402791712125|2.84|150.0|54|1|anti-sense MSMS UPN47_class_I_Rep_3 4 562.7843017578125 2 562.783513 1123.55247 NaN NaN NaN NaN NaN NaN NaN 41.907 1 45.145 44.645 45.645 3.2386 0 0 0 0.40604 1 8546 8546 2.5775 0.92486 1 28325 33442 17907 17918 32871 32871 -0.004361075608585452 NINECSSSPCL 11 Unmodified _NINECSSSPCL_ 0 0 0 ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;SVEP1|p.K3180Nfs*8|1|0.23|ENSG00000165124|chr9:110404453-110404453|T/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1 ENST00000467821.1_1_9:113205816-113312285:-|nuORF ENST00000467821.1_1_9:113205816-113312285:-|nuORF MSMS UPN47_class_I_Rep_1 2 583.7447509765625 2 583.744456 1165.47436 NaN NaN NaN NaN NaN NaN NaN 113.19 1 116.76 116.26 117.26 3.572 0 0 0 0.38417 1 27922 27922 1.0715 0 1 28326 4158 17908 17919 32872 32872 -0.10175952999043147 NINKNKYLY 9 Unmodified _NINKNKYLY_ 0 0 0 REV__AluJb_dup106341|chr17:27299240-27299521:+|1.2853506888592188|0.4543963633038661|1.5|151.0|8|2|sense REV__AluJb_dup106341|chr17:27299240-27299521:+|1.2853506888592188|0.4543963633038661|1.5|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 584.8164672851562 2 585.319306 1168.62406 0.34704 0.00020313 -3.5434 -0.002074 -3.1964 -0.0018709 585.3172527386322 68.835 0.13564 72.199 72.101 72.237 3.3646 14 11 2 0 0 0 0.12281 1 16635 16635 4.3292 1.334 1 46176 + 28327 16914 17909 17920 32873 32873 0.04649103397377985 NINPLEHQ 8 Unmodified _NINPLEHQ_ 0 0 0 L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|74|3|sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|74|3|sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|74|3|sense MSMS UPN46_class_I_Rep_3 1 482.79559326171875 2 482.745973 963.477394 NaN NaN NaN NaN NaN NaN NaN 41.17 1 41.17 40.67 41.67 0 0 0 0 0.40472 1 8046 8046 4.3292 1.0479 1 28328 14007 17910 17921 32874 32874 -0.005805737677178513 NIPESLGYG 9 Unmodified _NIPESLGYG_ 0 0 0 L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|95|3|sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|95|3|sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|95|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 475.2346496582031 2 475.234907 948.455261 0.1162 5.522E-05 -0.28915 -0.00013741 -0.17295 -8.2192E-05 475.2346990943173 57.756 0.66867 61.193 60.934 61.603 3.437 78 44 2 0 0 0 0.20276 1 13289 13289 20.454 1.1966 1 192020 28329 13967 17911 17922 32875 32875 -0.021027982361374598 NIQKQRIFKH 10 Unmodified _NIQKQRIFKH_ 0 0 0 REV__ENST00000391611.6_2_14:60574508-60574697:+|nuORF REV__ENST00000391611.6_2_14:60574508-60574697:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.9278869628906 3 437.926322 1310.75714 NaN NaN NaN NaN NaN NaN NaN 42.797 1 46.305 45.805 46.805 3.5079 0 0 0 0.53105 1 7958 7958 0.77653 0.078866 1 + 28330 22082 17912 17923 32876 32876 0.11418967573877126 NIRGDTGHKAC 11 Unmodified _NIRGDTGHKAC_ 0 0 0 nc|ENSG00000171291|Q8NDP4|ZNF439;ENSG00000171291|ENST00000682736|ZNF439 nc|ENSG00000171291|Q8NDP4|ZNF439 nc|ENSG00000171291|Q8NDP4|ZNF439 MSMS UPN48_class_I_Rep_2 6 586.287841796875 2 586.285471 1170.55639 NaN NaN NaN NaN NaN NaN NaN 27.637 1 31.268 30.768 31.768 3.6311 0 0 0 0.38417 1 3689 3689 1.1933 0.39971 1 28331 4515 17913 17924 32877 32877 -0.022066698050593914 NIRGKLVSL 9 Unmodified _NIRGKLVSL_ 0 0 0 ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7 ENST00000459779.1_1_1:53068081-53072661:+|nuORF ENST00000459779.1_1_1:53068081-53072661:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 500.3192443847656 2 500.319109 998.623664 -0.2328 -0.00011647 0.17765 8.8881E-05 -0.055151 -2.7593E-05 500.3191243457832 38.68 0.93217 42.345 41.997 42.929 3.6652 93 61 2 0 0 0 0.31407 1 7464 7464 13.042 2.243 1 154260 28332 2166 17914 17925 32878 32878 0.12429728468180201 NIRGKLVSL 9 Unmodified _NIRGKLVSL_ 0 0 0 ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7 ENST00000459779.1_1_1:53068081-53072661:+|nuORF ENST00000459779.1_1_1:53068081-53072661:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.3189392089844 2 500.319109 998.623664 -0.25362 -0.00012689 0.12511 6.2594E-05 -0.12852 -6.4299E-05 500.3190770916615 39.398 0.94041 42.636 42.263 43.203 3.238 105 63 2 0 0 0 0.12799 2 7795 7751;7795 28.487 1.6032 1 93347 28333 2166 17914 17925 32879;32880 32880 0.12429728468180201 NIRGKLVSL 9 Unmodified _NIRGKLVSL_ 0 0 0 ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7 ENST00000459779.1_1_1:53068081-53072661:+|nuORF ENST00000459779.1_1_1:53068081-53072661:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 500.319109 998.623664 -0.17969 -8.9902E-05 -0.12809 -6.4084E-05 -0.30778 -0.00015399 500.3190767826381 39.026 0.87314 42.404 42.112 42.985 3.3785 -0.057548 -0.00019169 NaN 28.487 70 50 2 NaN NaN NaN NaN 0 NaN NaN 0 125450 28334 2166 17914 17925 0.12429728468180201 NIRHSPPG 8 Unmodified _NIRHSPPG_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MSMS UPN47_class_I_Rep_1 2 439.2362060546875 2 439.235576 876.456599 0.1569 6.8915E-05 0.70035 0.00030762 0.85725 0.00037654 439.23592911477954 95.256 0.60169 99.021 98.561 99.162 3.7648 107 79 2 0 0 0 0.82752 1 23611 23611 8.5933 0 1 120280 28335 4543 17915 17926 32881 32881 0.013428806432898455 NIRHSPPG 8 Unmodified _NIRHSPPG_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 439.235576 876.456599 0.15752 6.9186E-05 0.88697 0.00038959 1.0445 0.00045877 439.2359713040538 98.915 0.070198 98.915 98.86 98.93 0 0.0031208 0.000351 NaN 8.5933 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 43964 28336 4543 17915 17926 0.013428806432898455 NIRHSPPG 8 Unmodified _NIRHSPPG_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 439.235576 876.456599 -0.11493 -5.0483E-05 0.82796 0.00036367 0.71302 0.00031318 439.23607845401494 95.285 0.55458 98.761 98.321 98.876 3.4753 -0.15111 0.00029916 NaN 8.5933 100 77 2 NaN NaN NaN NaN 0 NaN NaN 0 104310 28337 4543 17915 17926 0.013428806432898455 NIRHSPPG 8 Unmodified _NIRHSPPG_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 439.235576 876.456599 -0.037562 -1.6498E-05 0.58313 0.00025613 0.54557 0.00023963 439.23584204042504 95.351 1.2706 98.968 98.203 99.474 3.6167 0.056334 8.4088E-05 NaN 8.5933 300 162 2 NaN NaN NaN NaN 0 NaN NaN 0 470610 28338 4543 17915 17926 0.013428806432898455 NIRHSPPG 8 Unmodified _NIRHSPPG_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 439.235576 876.456599 0.11752 5.1618E-05 0.44888 0.00019717 0.5664 0.00024878 439.2357900151516 94.936 1.2456 98.716 98.215 99.461 3.7804 -0.19555 -3.3841E-05 NaN 8.5933 336 172 2 NaN NaN NaN NaN 0 NaN NaN 0 444280 28339 4543 17915 17926 0.013428806432898455 NIRHSPPG 8 Unmodified _NIRHSPPG_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 439.235576 876.456599 0.14653 6.4363E-05 0.38771 0.0001703 0.53425 0.00023466 439.2357793059787 95.101 1.2557 99.003 98.252 99.508 3.9016 0.091384 -8.7577E-05 NaN 8.5933 325 168 2 NaN NaN NaN NaN 0 NaN NaN 0 494580 28340 4543 17915 17926 0.013428806432898455 NIRKHRQP 8 Unmodified _NIRKHRQP_ 0 0 0 L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|17|1|sense L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|17|1|sense L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 525.2479858398438 2 524.809774 1047.60499 NaN NaN NaN NaN NaN NaN NaN 38.335 1 42 41.5 42.5 3.6652 0 0 0 0.40604 1 7375 7375 2.5775 0 1 28341 9394 17916 17927 32882 32882 0.0830961161700543 NIRVVKKN 8 Unmodified _NIRVVKKN_ 0 0 0 REV__L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|43|3|sense REV__L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|43|3|sense MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 42.039 1 45.278 44.778 45.778 3.2394 0 0 0 0.4044 1 8587 8587 4.756 2.4533 1 + 28342 28577 17917 17928 32883 32883 0.12232861670997863 NIRVVKKN 8 Unmodified _NIRVVKKN_ 0 0 0 REV__L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|43|3|sense REV__L1MEd_dup5402|chr4:77761016-77762608:+|1.4794807071358411|0.1370090767764674|3.43|151.0|43|3|sense MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 42.205 1 45.445 44.945 45.945 3.2394 0 0 0 0.4044 1 8638 8638 4.756 2.4533 1 + 28343 28577 17917 17928 32884 32884 0.12232861670997863 NISFQGEF 8 Unmodified _NISFQGEF_ 0 0 0 REV__nc|ENSG00000113719|Q969X5-3|ERGIC1 REV__nc|ENSG00000113719|Q969X5-3|ERGIC1 MSMS UPN46_class_I_Rep_3 1 471.2208251953125 2 471.2218 940.429047 NaN NaN NaN NaN NaN NaN NaN 54.4 1 54.4 53.9 54.9 0 0 0 0 0.37681 1 11775 11775 15.847 2.3393 1 + 28344 18515 17918 17929 32885 32885 -0.04355067407607294 NISLKSICIK 10 Unmodified _NISLKSICIK_ 0 0 0 REV__Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|14|3|sense REV__Kanga1_dup160|chr3:136725368-136725743:+|1.913198795371949|0.0107570765327159|7.47|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 559.8325805664062 2 559.833734 1117.65292 NaN NaN NaN NaN NaN NaN NaN 47.584 1 51.218 50.718 51.718 3.6339 0 0 0 0.53105 1 9352 9352 8.1555 0 1 + 28345 23988 17919 17930 32886 32886 0.09879504702144004 NISNRGLR 8 Unmodified _NISNRGLR_ 0 0 0 REV__L1PA3_dup3968|chr6:6294744-6300768:-|1.427538487289879|0.4305667852692419|1.73|149.0|161|3|sense REV__L1PA3_dup3968|chr6:6294744-6300768:-|1.427538487289879|0.4305667852692419|1.73|149.0|161|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.2703552246094 2 465.267407 928.520262 0.22754 0.00010587 2.7435 0.0012765 2.971 0.0013823 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.82752 1 25447 25447 2.5775 0 1 4396600 + 28346 29514 17920 17931 32887 32887 0.053142410803729945 NISSQPPIY 9 Unmodified _NISSQPPIY_ 0 0 0 REV__L1MB3_dup456|chr1:52535549-52536570:+|1.0447999782681603|0.0237561648522457|5.46|151.0|3|1|sense REV__L1MB3_dup456|chr1:52535549-52536570:+|1.0447999782681603|0.0237561648522457|5.46|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 509.7637023925781 2 509.763832 1017.51311 -0.13955 -7.1136E-05 -0.025839 -1.3172E-05 -0.16539 -8.4308E-05 509.76373580808746 41.835 0.91343 45.514 45.182 46.095 3.6792 155 64 3 0 0 0 0.21527 1 8554 8554 19.257 19.257 1 500660 + 28347 25891 17921 17932 32888 32888 0.005054636892964481 NISSQPPIY 9 Unmodified _NISSQPPIY_ 0 0 0 REV__L1MB3_dup456|chr1:52535549-52536570:+|1.0447999782681603|0.0237561648522457|5.46|151.0|3|1|sense REV__L1MB3_dup456|chr1:52535549-52536570:+|1.0447999782681603|0.0237561648522457|5.46|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 509.7646484375 2 509.763832 1017.51311 -0.09852 -5.0222E-05 -0.070349 -3.5862E-05 -0.16887 -8.6084E-05 509.76376712634675 42.344 1.0371 45.584 45.177 46.214 3.2394 174 73 3 0 0 0 0.32682 1 8831 8831 12.241 2.8575 1 418090 + 28348 25891 17921 17932 32889 32889 0.005054636892964481 NISYGFGNSF 10 Unmodified _NISYGFGNSF_ 0 0 0 REV__L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|93|3|anti-sense REV__L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|93|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.2510375976562 2 553.251089 1104.48762 0.37516 0.00020756 -0.90844 -0.0005026 -0.53328 -0.00029504 553.2505434287423 60.915 0.10086 64.08 64.07 64.171 3.1651 12 8 2 0 0 0 0.55148 1 14337 14337 5.2969 0 1 271610 + 28349 27743 17922 17933 32890 32890 -0.060440108331249576 NITDSKNYLI 10 Unmodified _NITDSKNYLI_ 0 0 0 ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1 ENSG00000122432|ENST00000699524|SPATA1 ENSG00000122432|ENST00000699524|SPATA1 MULTI-MSMS UPN48_class_I_Rep_1 5 590.8153686523438 2 590.814053 1179.61355 0.45967 0.00027158 0.0094176 5.5641E-06 0.46909 0.00027714 590.8141609185532 68.971 0.73061 72.426 72.072 72.803 3.4548 79 55 2 0 0 0 0.41718 1 16018 16018 18.146 0 1 278440 28350 2386 17923 17934 32891 32891 0.030930759523016604 NITDSKNYLI 10 Unmodified _NITDSKNYLI_ 0 0 0 ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1 ENSG00000122432|ENST00000699524|SPATA1 ENSG00000122432|ENST00000699524|SPATA1 MULTI-MSMS UPN48_class_I_Rep_2 6 590.814208984375 2 590.814053 1179.61355 0.48745 0.00028799 -0.020569 -1.2152E-05 0.46688 0.00027584 590.8140313695034 68.746 0.70067 72.254 71.978 72.679 3.5083 68 52 2 0 0 0 0.52562 1 15834 15834 8.7454 0 1 744290 28351 2386 17923 17934 32892 32892 0.030930759523016604 NIVEKIDF 8 Unmodified _NIVEKIDF_ 0 0 0 nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K nc|ENSG00000178982|Q9UBQ5-2|EIF3K nc|ENSG00000178982|Q9UBQ5-2|EIF3K MULTI-MSMS UPN47_class_I_Rep_3 4 489.26898193359375 2 489.26875 976.522947 0.20198 9.8825E-05 -0.16346 -7.9974E-05 0.038528 1.885E-05 489.2686212626811 76.701 0.72128 79.97 79.651 80.372 3.269 113 79 2 0 0 0 0.82752 1 19136 19136 4.756 0 1 120490 28352 4839 17924 17935 32893 32893 0.03374651694662134 NIVERVKEV 9 Unmodified _NIVERVKEV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MSMS UPN47_class_I_Rep_2 3 543.3238525390625 2 543.319306 1084.62406 NaN NaN NaN NaN NaN NaN NaN 34.904 1 38.329 37.829 38.829 3.4253 0 0 0 0.34878 1 6369 6369 8.1555 0 1 28353 2740 17925 17936 32894 32894 0.08513103397376653 NIVFAIFDL 9 Unmodified _NIVFAIFDL_ 0 0 0 L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|107|2|anti-sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|107|2|anti-sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|107|2|anti-sense MSMS UPN48_class_I_Rep_2 6 526.2941284179688 2 526.294768 1050.57498 NaN NaN NaN NaN NaN NaN NaN 35.525 1 39.213 38.713 39.713 3.6877 0 0 0 0.39518 1 5866 5866 1.8442 0.36234 1 28354 11173 17926 17937 32895 32895 0.05171815108406008 NIVFAVFKTL 10 Unmodified _NIVFAVFKTL_ 0 0 0 L1M1_dup6798|chr10:74361204-74362902:-|1.03550425678973|0.0248706214989718|5.38|151.0|48|3|sense L1M1_dup6798|chr10:74361204-74362902:-|1.03550425678973|0.0248706214989718|5.38|151.0|48|3|sense L1M1_dup6798|chr10:74361204-74362902:-|1.03550425678973|0.0248706214989718|5.38|151.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 576.360595703125 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 85.853 1 89.225 88.725 89.725 3.3716 0 0 0 0.53105 1 21512 21512 1.4819 0 1 28355 8605 17927 17938 32896 32896 0.1057205244223951 NIVFEKKTP 9 Unmodified _NIVFEKKTP_ 0 0 0 REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 REV__nc|ENSG00000128191|Q8WYQ5-3|DGCR8 MSMS UPN46_class_I_Rep_3 1 538.31005859375 2 538.310949 1074.60735 NaN NaN NaN NaN NaN NaN NaN 84.818 1 84.818 84.318 85.318 0 0 0 0 0.38639 1 20201 20201 3.9444 0.3479 1 + 28356 18893 17928 17939 32897 32897 0.07302602511435907 NIVHRGVG 8 Unmodified _NIVHRGVG_ 0 0 0 nc|ENSG00000015153|Q8IY57-4|YAF2 nc|ENSG00000015153|Q8IY57-4|YAF2 nc|ENSG00000015153|Q8IY57-4|YAF2 MULTI-MSMS UPN48_class_I_Rep_1 5 426.2459411621094 2 426.245944 850.477334 -0.069498 -2.9623E-05 0.092026 3.9226E-05 0.022528 9.6025E-06 426.24597397372406 78.406 0.87312 81.941 81.548 82.421 3.5352 218 107 4 0 0 0 0.82752 1 18722 18722 5.2307 0 1 748790 28357 16619 17929 17940 32898 32898 0.04611471022963087 NIVLKGHRLY 10 Unmodified _NIVLKGHRLY_ 0 0 0 REV__ENST00000570005.5_1_16:2732549-2747193:+|nuORF REV__ENST00000570005.5_1_16:2732549-2747193:+|nuORF MSMS UPN46_class_I_Rep_3 1 606.8628540039062 2 606.864215 1211.71388 NaN NaN NaN NaN NaN NaN NaN 72.025 1 72.025 71.525 72.525 0 0 0 0 0.53105 1 16625 16625 1.4819 0.95714 1 + 28358 20248 17930 17941 32899 32899 0.11648777796608556 NIVMRRQF 8 Unmodified _NIVMRRQF_ 0 0 0 REV__L1MA3_dup6258|chr11:6579554-6581749:+|1.20910028558177|0.0604464226281136|4.32|151.0|62|3|sense REV__L1MA3_dup6258|chr11:6579554-6581749:+|1.20910028558177|0.0604464226281136|4.32|151.0|62|3|sense MSMS UPN46_class_I_Rep_3 1 532.2952270507812 2 532.295111 1062.57567 NaN NaN NaN NaN NaN NaN NaN 34.029 1 34.029 33.529 34.529 0 0 0 0 0.40625 1 6026 6026 2.3027 0.24298 1 + 28359 25062 17931 17942 32900 32900 0.046883312764975926 NIVPMYLLK 9 Unmodified _NIVPMYLLK_ 0 0 0 L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|62|2|anti-sense L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|62|2|anti-sense L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 545.8187866210938 2 545.820095 1089.62564 0.46173 0.00025202 -1.5934 -0.00086972 -1.1317 -0.0006177 545.819079241482 79.819 0.10184 83.284 83.209 83.311 3.465 18 12 2 0 0 0 0.48846 1 19895 19895 1.8442 0 1 116630 28360 13290 17932 17943 32901 32901 0.08441021161775097 NIVQIIEVF 9 Unmodified _NIVQIIEVF_ 0 0 0 ENST00000546394.1_1_12:112280306-112308075:+|nuORF;ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENST00000546394.1_1_12:112280306-112308075:+|nuORF ENST00000546394.1_1_12:112280306-112308075:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 537.81298828125 2 537.813325 1073.6121 0.35404 0.00019041 -0.42938 -0.00023093 -0.075335 -4.0516E-05 537.8129150771769 108.75 0.4129 112.38 112.25 112.66 3.6321 73 46 3 0 0 0 0.41259 1 26356 26356 7.2892 0.56607 1 11244000 28361 1326 17933 17944 32902 32902 0.07823486654183398 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MSMS UPN47_class_I_Rep_1 2 437.25750732421875 3 437.257738 1308.75138 0.12826 5.6082E-05 -0.83914 -0.00036692 -0.71088 -0.00031084 437.2574357297817 90.3 0.46835 93.99 93.704 94.172 3.6899 90 61 2 0 0 0 0.68081 1 22512 22512 0.45452 0 1 138580 + 28362 20501 17934 17945 32903 32903 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-SECPEP UPN47_class_I_Rep_1 2 436.8793029785156 3 437.257738 1308.75138 0.11856 5.1841E-05 -1.44 -0.00062964 -1.3214 -0.0005778 437.2568433376187 88.657 0.1767 92.313 92.249 92.426 3.6563 21 21 2 0 0 0 22.551 1 22172 22172 0.45452 0.1855 1 52482 + 28363 20501 17934 17945 32904 32904 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH UPN46_class_I_Rep_3 1 3 437.257738 1308.75138 0.15224 6.6568E-05 -0.48615 -0.00021257 -0.33391 -0.000146 437.2572671931119 92.594 0.053413 92.594 92.564 92.617 0 0.12057 0.00085145 NaN 0.45452 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 68691 + 28364 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 437.257738 1308.75138 0.15232 6.6604E-05 -1.0385 -0.00045408 -0.88614 -0.00038747 437.25726499476485 93.951 0.17738 93.951 93.911 94.088 0 -0.040515 -0.00035877 NaN 0.45452 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2289600 + 28365 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 437.257738 1308.75138 0.12826 5.6082E-05 -0.83914 -0.00036692 -0.71088 -0.00031084 437.2574357297817 90.3 0.46835 93.99 93.704 94.172 3.6899 -0.0015925 -9.7305E-05 NaN 0.45452 90 61 2 NaN NaN NaN NaN 0 NaN NaN 0 138580 + 28366 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH UPN47_class_I_Rep_2 3 3 437.257738 1308.75138 -0.17825 -7.794E-05 -0.48636 -0.00021267 -0.66461 -0.00029061 437.2575759628211 90.536 0.28833 93.993 93.86 94.149 3.4571 0.0018155 0.00036546 NaN 0.45452 88 41 3 NaN NaN NaN NaN 0 NaN NaN 0 152460 + 28367 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH UPN48_class_I_Rep_2 6 3 437.257738 1308.75138 0.10989 4.805E-05 -0.98932 -0.00043259 -0.87943 -0.00038454 437.5916277227275 88.796 0.27942 92.534 92.357 92.637 3.7379 0.059816 0.0001914 NaN 0.45452 40 35 2 NaN NaN NaN NaN 0 NaN NaN 0 89713 + 28368 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH UPN48_class_I_Rep_2 6 3 437.257738 1308.75138 0.10998 4.8091E-05 -0.63517 -0.00027773 -0.52518 -0.00022964 437.25749278032015 90.311 0.71198 94.058 93.966 94.678 3.7471 0.066917 0.00017026 NaN 0.45452 138 104 2 NaN NaN NaN NaN 0 NaN NaN 0 283990 + 28369 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH UPN48_class_I_Rep_3 7 3 437.257738 1308.75138 0.15728 6.8771E-05 -1.7576 -0.00076854 -1.6004 -0.00069977 437.2569233301626 88.644 0.097382 92.454 92.418 92.515 3.8104 -0.019415 -0.00081647 NaN 0.45452 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 57524 + 28370 20501 17934 17945 0.10935824271541605 NIVQNDLLPRK 11 Unmodified _NIVQNDLLPRK_ 0 0 0 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 REV__nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MATCH UPN48_class_I_Rep_3 7 3 437.257738 1308.75138 0.15416 6.741E-05 -0.76135 -0.00033291 -0.60719 -0.0002655 437.2574912390994 90.118 0.68475 93.965 93.538 94.222 3.847 -0.026625 4.7377E-06 NaN 0.45452 132 96 2 NaN NaN NaN NaN 0 NaN NaN 0 206450 + 28371 20501 17934 17945 0.10935824271541605 NIVRPPHP 8 Unmodified _NIVRPPHP_ 0 0 0 FLAM_C_dup11944|chr9:129942838-129942992:-|1.1149595156277532|0.0089625504305299|6.96|151.0|6|3|sense FLAM_C_dup11944|chr9:129942838-129942992:-|1.1149595156277532|0.0089625504305299|6.96|151.0|6|3|sense FLAM_C_dup11944|chr9:129942838-129942992:-|1.1149595156277532|0.0089625504305299|6.96|151.0|6|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 465.2703552246094 2 465.269419 928.524284 -0.012606 -5.8653E-06 -1.2378 -0.00057593 -1.2505 -0.0005818 465.27037302146215 99.894 0.56068 103.34 103.11 103.67 3.4483 180 71 4 0 0 0 0.82752 1 24683 24683 5.7604 0.52976 1 1143700 28372 7775 17935 17946 32905 32905 0.05716330574091444 NIVRPPHP 8 Unmodified _NIVRPPHP_ 0 0 0 FLAM_C_dup11944|chr9:129942838-129942992:-|1.1149595156277532|0.0089625504305299|6.96|151.0|6|3|sense FLAM_C_dup11944|chr9:129942838-129942992:-|1.1149595156277532|0.0089625504305299|6.96|151.0|6|3|sense FLAM_C_dup11944|chr9:129942838-129942992:-|1.1149595156277532|0.0089625504305299|6.96|151.0|6|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 465.270263671875 2 465.269419 928.524284 0.061699 2.8707E-05 -1.4154 -0.00065853 -1.3537 -0.00062982 465.27027997784995 99.661 0.3192 103.27 103.05 103.37 3.6065 109 42 4 0 0 0 0.82752 1 24060 24060 2.8892 0.31174 1 615480 28373 7775 17935 17946 32906 32906 0.05716330574091444 NIVRYHIGELH 11 Unmodified _NIVRYHIGELH_ 0 0 0 REV__Tigger1_dup9178|chr12:63787930-63789640:-|1.1975968689585268|0.2150466432599304|2.48|151.0|77|1|anti-sense REV__Tigger1_dup9178|chr12:63787930-63789640:-|1.1975968689585268|0.2150466432599304|2.48|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.91387939453125 3 450.914083 1349.72042 -0.37696 -0.00016998 -0.193 -8.7026E-05 -0.56996 -0.000257 450.91396635229313 31.793 1.0771 35.522 35.173 36.25 3.7293 220 84 4 0 0 0 0.64031 1 5327 5327 4.1166 0.52395 1 453730 + 28374 32564 17936 17947 32907 32907 0.05954670957316921 NIVVKRSN 8 Unmodified _NIVVKRSN_ 0 0 0 REV__ENST00000557012.5_1_14:75348653-75356060:+|nuORF REV__ENST00000557012.5_1_14:75348653-75356060:+|nuORF MSMS UPN48_class_I_Rep_2 6 465.2704772949219 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 99.438 1 103.2 102.7 103.7 3.7575 0 0 0 0.40604 1 23612 23612 2.5775 0 1 + 28375 18681 17937 17948 32908 32908 0.07828295882950442 NIVVQLIYN 9 Unmodified _NIVVQLIYN_ 0 0 0 REV__nc|ENSG00000115318|P58215-2|LOXL3 REV__nc|ENSG00000115318|P58215-2|LOXL3 MSMS UPN46_class_I_Rep_3 1 538.3090209960938 2 538.310949 1074.60735 NaN NaN NaN NaN NaN NaN NaN 84.867 1 84.867 84.367 85.367 0 0 0 0 0.37476 1 20216 20216 6.7232 0.99131 1 + 28376 18556 17938 17949 32909 32909 0.07302602511435907 NIVVYLPR 8 Unmodified _NIVVYLPR_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C MSMS UPN48_class_I_Rep_2 6 487.2943420410156 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 94.351 1 98.127 97.627 98.627 3.7761 0 0 0 0.40625 1 22434 22434 2.3027 0 1 + 28377 31991 17939 17950 32910 32910 0.0882665454812468 NIWMKTKY 8 Unmodified _NIWMKTKY_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|34|1|sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|34|1|sense MSMS UPN46_class_I_Rep_3 1 542.288330078125 2 542.28642 1082.55829 NaN NaN NaN NaN NaN NaN NaN 20.293 1 20.293 19.793 20.793 0 0 0 0 0.40157 1 2084 2084 7.2892 0 1 + 28378 25389 17940 17951 32911 32911 0.020309909508114288 NIWQKKNR 8 Unmodified _NIWQKKNR_ 0 0 0 REV__L1ME1_dup2884|chr2:27589215-27590655:-|2.7911218754885847|0.1419747555160017|4.3|151.0|24|2|sense REV__L1ME1_dup2884|chr2:27589215-27590655:-|2.7911218754885847|0.1419747555160017|4.3|151.0|24|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 543.8123168945312 2 543.811982 1085.60941 0.33706 0.0001833 -2.2287 -0.001212 -1.8916 -0.0010287 544.3112588858716 40.01 0.044357 40.01 39.984 40.028 0 7 4 2 0 0 0 0.82752 1 7735 7735 9.3474 1.1919 1 64726 + 28379 27736 17941 17952 32912 32912 0.07003076039904954 NIYAHMHIY 9 Unmodified _NIYAHMHIY_ 0 0 0 REV__L1MEd_dup3360|chr2:210048288-210049119:-|1.25708613059855|0.1227176301536836|3.36|151.0|57|3|anti-sense REV__L1MEd_dup3360|chr2:210048288-210049119:-|1.25708613059855|0.1227176301536836|3.36|151.0|57|3|anti-sense MSMS UPN47_class_I_Rep_1 2 581.2791137695312 2 581.279126 1160.5437 NaN NaN NaN NaN NaN NaN NaN 49.811 1 53.47 52.97 53.97 3.6592 0 0 0 0.38299 1 10868 10868 4.756 0 1 + 28380 28569 17942 17953 32913 32913 -0.03015081197327163 NIYFDDVLF 9 Unmodified _NIYFDDVLF_ 0 0 0 L1M4_dup16770|chr15:56126488-56127550:+|1.955996766606945|0.0141421055103026|7.11|151.0|51|1|anti-sense L1M4_dup16770|chr15:56126488-56127550:+|1.955996766606945|0.0141421055103026|7.11|151.0|51|1|anti-sense L1M4_dup16770|chr15:56126488-56127550:+|1.955996766606945|0.0141421055103026|7.11|151.0|51|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.2801513671875 2 573.279315 1144.54408 0.51294 0.00029406 1.3505 0.0007742 1.8634 0.0010683 573.2800368576835 77.28 0.79124 80.881 80.602 81.394 3.6016 141 70 3 0 0 0 0.13631 1 18280 18280 26.884 1.4843 1 400290 28381 8855 17943 17954 32914 32914 -0.022413829964989418 NIYIMLKLK 9 Unmodified _NIYIMLKLK_ 0 0 0 REV__LTR33_dup1885|chr3:142487938-142488428:+|1.860478798815352|0.1159533727364801|4.0|151.0|13|3|sense REV__LTR33_dup1885|chr3:142487938-142488428:+|1.860478798815352|0.1159533727364801|4.0|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 568.3482055664062 2 568.34902 1134.68349 NaN NaN NaN NaN NaN NaN NaN 113.43 1 116.92 116.42 117.42 3.4963 0 0 0 0.40038 1 27823 27823 0.6015 0 1 + 28382 30898 17944 17955 32915 32915 0.12153283087172895 NIYIYIKY 8 Unmodified _NIYIYIKY_ 0 0 0 L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|16|1|sense L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|16|1|sense L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 545.3018798828125 2 545.302593 1088.59063 NaN NaN NaN NaN NaN NaN NaN 65.153 1 68.632 68.132 69.132 3.4792 0 0 0 0.40404 1 14789 14789 5.2307 0 1 28383 8700 17945 17956 32916 32916 0.04988101625440322 NIYRYVYK 8 Unmodified _NIYRYVYK_ 0 0 0 L1MC3_dup7226|chrX:48930134-48930675:+|1.2136913583727371|0.2268540042622685|2.42|151.0|6|1|sense L1MC3_dup7226|chrX:48930134-48930675:+|1.2136913583727371|0.2268540042622685|2.42|151.0|6|1|sense L1MC3_dup7226|chrX:48930134-48930675:+|1.2136913583727371|0.2268540042622685|2.42|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.306396484375 2 559.803291 1117.59203 0.32773 0.00018347 -0.30908 -0.00017302 0.018655 1.0443E-05 559.8030729072086 39.219 0.54041 42.875 42.699 43.239 3.6557 65 47 2 0 0 0 0.82752 1 6823 6823 2.3027 0 1 106600 28384 11365 17946 17957 32917 32917 0.03793735714225477 NIYTQWNII 9 Unmodified _NIYTQWNII_ 0 0 0 L1PB4_dup131|chr1:89653857-89654423:+|1.3533464754917794|0.0113625582208908|6.9|151.0|15|3|sense L1PB4_dup131|chr1:89653857-89654423:+|1.3533464754917794|0.0113625582208908|6.9|151.0|15|3|sense L1PB4_dup131|chr1:89653857-89654423:+|1.3533464754917794|0.0113625582208908|6.9|151.0|15|3|sense MSMS UPN48_class_I_Rep_3 7 582.8167724609375 2 582.806031 1163.59751 NaN NaN NaN NaN NaN NaN NaN 68.862 1 72.371 71.871 72.871 3.5094 0 0 0 0.15455 1 15820 15820 19.257 5.3509 1 28385 15292 17947 17958 32918 32918 0.02225414506051493 NIYVYLKAP 9 Unmodified _NIYVYLKAP_ 0 0 0 REV__nc|ENSG00000204209|Q9UER7-3|DAXX REV__nc|ENSG00000204209|Q9UER7-3|DAXX MULTI-MSMS UPN47_class_I_Rep_2 3 541.289794921875 2 540.808042 1079.60153 0.47608 0.00025747 -0.31586 -0.00017082 0.16023 8.6651E-05 540.807962599665 58.108 0.67587 61.399 61.137 61.813 3.2912 56 41 2 0 0 0 0.28552 1 13475 13475 14.838 4.0143 1 61475 + 28386 21180 17948 17959 32919 32919 0.06491503999745873 NKAAPPQI 8 Unmodified _NKAAPPQI_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MSMS UPN48_class_I_Rep_1 5 419.74188232421875 2 419.742702 837.470852 -0.12603 -5.2902E-05 -1.1325 -0.00047535 -1.2585 -0.00052825 419.74208753035964 107.64 0.11304 111.27 111.19 111.31 3.6313 33 14 3 0 0 0 0.82752 1 25943 25943 2.3027 0 1 4824400 28387 4054 17949 17960 32920 32920 0.04561533071546364 NKAAPPQI 8 Unmodified _NKAAPPQI_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MATCH UPN47_class_I_Rep_1 2 2 419.742702 837.470852 0.10516 4.4139E-05 -1.4818 -0.00062197 -1.3766 -0.00057784 419.7419955265336 107.68 0.14188 111.35 111.27 111.41 3.6724 0.071624 -0.00016976 NaN 2.3027 33 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2830500 28388 4054 17949 17960 0.04561533071546364 NKAAPPQI 8 Unmodified _NKAAPPQI_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MATCH UPN47_class_I_Rep_2 3 2 419.742702 837.470852 -0.36953 -0.00015511 -1.3362 -0.00056088 -1.7058 -0.00071598 419.74210649961543 107.66 0.095932 111.19 111.15 111.25 3.5345 -0.085548 -4.7565E-05 NaN 2.3027 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3001100 28389 4054 17949 17960 0.04561533071546364 NKAAPPQI 8 Unmodified _NKAAPPQI_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MATCH UPN47_class_I_Rep_3 4 2 419.742702 837.470852 -0.55437 -0.00023269 -0.78399 -0.00032907 -1.3384 -0.00056176 419.7423396150883 107.67 0.12596 111.21 111.14 111.26 3.5382 -0.074692 0.00041604 NaN 2.3027 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2329800 28390 4054 17949 17960 0.04561533071546364 NKAAPPQI 8 Unmodified _NKAAPPQI_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 419.742702 837.470852 0.082166 3.4489E-05 -1.4207 -0.00059632 -1.3385 -0.00056183 419.7419467610961 107.65 0.11812 111.33 111.27 111.39 3.6783 0.045555 -0.00011845 NaN 2.3027 26 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6320200 28391 4054 17949 17960 0.04561533071546364 NKAAPPQI 8 Unmodified _NKAAPPQI_ 0 0 0 nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 nc|ENSG00000163875|Q9HAF1-2|MEAF6 MULTI-MATCH UPN48_class_I_Rep_3 7 2 419.742702 837.470852 0.10507 4.4103E-05 -1.4964 -0.00062812 -1.3914 -0.00058402 419.74201559065745 107.65 0.11298 111.33 111.29 111.4 3.6813 0.052325 -0.00018206 NaN 2.3027 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4011600 28392 4054 17949 17960 0.04561533071546364 NKAGVAILVF 10 Unmodified _NKAGVAILVF_ 0 0 0 L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|85|2|sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|85|2|sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|85|2|sense MSMS UPN48_class_I_Rep_3 7 516.3150024414062 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 93.656 1 97.547 97.047 98.047 3.8914 0 0 0 0.53105 1 22199 22199 1.4819 0.79152 1 28393 14758 17950 17961 32921 32921 0.10343210236646883 NKALAKKP 8 Unmodified _NKALAKKP_ 0 0 0 REV__ENST00000398005.3_1_13:59584546-59584735:+|nuORF REV__ENST00000398005.3_1_13:59584546-59584735:+|nuORF MSMS UPN47_class_I_Rep_3 4 435.2999572753906 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 62.571 1 65.741 65.241 66.241 3.1698 0 0 0 0.40625 1 14844 14844 2.3027 0.4585 1 + 28394 22137 17951 17962 32922 32922 0.10990385376658196 NKALKTKQK 9 Unmodified _NKALKTKQK_ 0 0 0 MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|108|3|anti-sense;MER66-int_dup1|chr1:149683678-149685807:-|3.5901664453604702|0.4173679766776176|3.1|150.0|104|3|anti-sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|108|3|anti-sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|108|3|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8372192382812 2 529.837665 1057.66078 NaN NaN NaN NaN NaN NaN NaN 16.283 1 19.832 19.332 20.332 3.5486 0 0 0 0.4007 1 765 765 0.52476 0 1 28395 16176 17952 17963 32923 32923 0.13425400013920807 NKARPDPIRK 10 Unmodified _NKARPDPIRK_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MSMS UPN48_class_I_Rep_3 7 597.856201171875 2 597.856921 1193.69929 0.55911 0.00033427 -0.88823 -0.00053104 -0.32912 -0.00019677 597.8560645566207 83.197 0.92611 86.903 86.469 87.395 3.7066 161 121 2 0 0 0 0.56333 1 19715 19715 1.4819 0 1 147630 + 28396 20424 17953 17964 32924 32924 0.11018705648416471 NKAYKNLH 8 Unmodified _NKAYKNLH_ 0 0 0 REV__L1MEi_dup1138|chr3:121875508-121877661:+|2.476023007384237|0.049272163668563|5.65|151.0|40|2|sense REV__L1MEi_dup1138|chr3:121875508-121877661:+|2.476023007384237|0.049272163668563|5.65|151.0|40|2|sense MSMS UPN47_class_I_Rep_1 2 494.2728271484375 2 494.272158 986.529764 NaN NaN NaN NaN NaN NaN NaN 72.748 1 76.127 75.627 76.627 3.3799 0 0 0 0.40625 1 17820 17820 2.3027 0.24298 1 + 28397 28802 17954 17965 32925 32925 0.03596009365878672 NKCLYYHW 8 Unmodified _NKCLYYHW_ 0 0 0 REV__L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|53|3|sense REV__L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|53|3|sense MSMS UPN47_class_I_Rep_2 3 564.2387084960938 2 563.760569 1125.50659 NaN NaN NaN NaN NaN NaN NaN 35.768 1 39.18 38.68 39.68 3.4114 0 0 0 0.40738 1 6633 6633 0.79363 0 1 + 28398 26458 17955 17966 32926 32926 -0.05114752743088502 NKDKLLGL 8 Unmodified _NKDKLLGL_ 0 0 0 L1PB1_dup3580|chr4:145018668-145022653:+|1.2346834530511617|0.0672457281842034|4.2|150.0|26|1|sense L1PB1_dup3580|chr4:145018668-145022653:+|1.2346834530511617|0.0672457281842034|4.2|150.0|26|1|sense L1PB1_dup3580|chr4:145018668-145022653:+|1.2346834530511617|0.0672457281842034|4.2|150.0|26|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.7792053222656 2 450.779285 899.544017 -0.14807 -6.6746E-05 0.25481 0.00011486 0.10674 4.8115E-05 450.779314020475 47.646 0.77622 51.341 51.131 51.908 3.6951 96 58 2 0 0 0 0.82752 1 10295 10295 8.5933 0 1 355200 28399 15094 17956 17967 32927 32927 0.09022661794188025 NKEGLRILHK 10 Unmodified _NKEGLRILHK_ 0 0 0 Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 604.3673095703125 2 604.367121 1206.71969 0.54649 0.00033028 -0.89578 -0.00054138 -0.34929 -0.0002111 604.3664808570419 97.345 0.13582 101.25 101.18 101.32 3.9084 32 17 3 0 0 0 0.56354 1 23066 23066 1.3295 0 1 1266200 28400 33070 17957 17968 32928 32928 0.12459876308253115 NKEGLRILHK 10 Unmodified _NKEGLRILHK_ 0 0 0 Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 604.367121 1206.71969 0.5992 0.00036214 -0.66137 -0.00039971 -0.062171 -3.7574E-05 604.3667397924639 101.56 0.034996 101.56 101.54 101.58 0 0.16333 0.00017315 NaN 1.3295 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 105770 28401 33070 17957 17968 0.12459876308253115 NKEGLRILHK 10 Unmodified _NKEGLRILHK_ 0 0 0 Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense Tigger1_dup2903|chr4:4452715-4453645:+|1.3518761325313164|0.0654239661724982|4.37|151.0|7|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 604.367121 1206.71969 0.54649 0.00033028 -0.89578 -0.00054138 -0.34929 -0.0002111 604.3664808570419 97.345 0.13582 101.25 101.18 101.32 3.9084 -0.14613 -0.00011019 NaN 1.3295 32 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1266200 28402 33070 17957 17968 0.12459876308253115 NKETLSLPHG 10 Unmodified _NKETLSLPHG_ 0 0 0 REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF MSMS UPN48_class_I_Rep_1 5 548.2922973632812 2 548.293288 1094.57202 NaN NaN NaN NaN NaN NaN NaN 80.055 1 83.604 83.104 84.104 3.5487 0 0 0 0.53105 1 19113 19113 3.5965 0 1 + 28403 22370 17958 17969 32929 32929 0.028519399836113735 NKFFFFKLWS 10 Unmodified _NKFFFFKLWS_ 0 0 0 REV__L1PA12_dup912|chr9:27073160-27075279:-|1.1146772451023463|0.321966809920392|1.79|151.0|94|3|anti-sense REV__L1PA12_dup912|chr9:27073160-27075279:-|1.1146772451023463|0.321966809920392|1.79|151.0|94|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 455.7463073730469 3 455.24477 1362.71248 0.14166 6.4489E-05 1.1595 0.00052787 1.3012 0.00059236 455.5793974875074 66.502 0.047142 66.502 66.479 66.526 0 5 4 2 0 0 0 0.84575 1 15088 15088 0.69767 0 1 31520 + 28404 29078 17959 17970 32930 32930 0.04563143707855488 NKFIFGLVR 9 Unmodified _NKFIFGLVR_ 0 0 0 REV__L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|232|3|anti-sense REV__L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|232|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3320922851562 2 547.329476 1092.6444 NaN NaN NaN NaN NaN NaN NaN 105.42 1 105.42 104.92 105.92 0 0 0 0 0.39518 1 25716 25716 1.8442 0 1 + 28405 29195 17960 17971 32931 32931 0.10178318847874834 NKFVGHLPLV 10 Unmodified _NKFVGHLPLV_ 0 0 0 L1PB1_dup9049|chr10:63312952-63314238:-|2.436865546008772|0.0379448643960007|6.0|151.0|90|3|anti-sense L1PB1_dup9049|chr10:63312952-63314238:-|2.436865546008772|0.0379448643960007|6.0|151.0|90|3|anti-sense L1PB1_dup9049|chr10:63312952-63314238:-|2.436865546008772|0.0379448643960007|6.0|151.0|90|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.11056 6.2172E-05 0.17431 9.8018E-05 0.28486 0.00016019 562.3346994269697 26.664 0.3514 26.664 26.51 26.861 0 62 25 3 0 0 0 0.55873 1 3812 3812 4.3292 2.485 1 1009400 28406 15212 17961 17972 32932 32932 0.09854301502286944 NKFVGHLPLV 10 Unmodified _NKFVGHLPLV_ 0 0 0 L1PB1_dup9049|chr10:63312952-63314238:-|2.436865546008772|0.0379448643960007|6.0|151.0|90|3|anti-sense L1PB1_dup9049|chr10:63312952-63314238:-|2.436865546008772|0.0379448643960007|6.0|151.0|90|3|anti-sense L1PB1_dup9049|chr10:63312952-63314238:-|2.436865546008772|0.0379448643960007|6.0|151.0|90|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 562.3335571289062 2 562.334759 1122.65496 0.63497 0.00035707 -0.21656 -0.00012178 0.41842 0.00023529 562.3340838451653 110.24 0.22588 113.77 113.7 113.93 3.5271 66 33 3 0 0 0 0.84575 1 26837 26837 1.8442 1.1539 1 156570 28407 15212 17961 17972 32933 32933 0.09854301502286944 NKGAARKK 8 Unmodified _NKGAARKK_ 0 0 0 REV__L1MC3_dup5631|chr7:102416207-102416664:-|1.0895551155235277|0.0717952993879161|3.92|151.0|3|1|sense REV__L1MC3_dup5631|chr7:102416207-102416664:-|1.0895551155235277|0.0717952993879161|3.92|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 436.7741394042969 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 94.235 1 97.856 97.356 98.356 3.6208 0 0 0 0.40746 1 22672 22672 0.69038 0 1 + 28408 26762 17962 17973 32934 32934 0.09427732948370249 NKGKLLCYISL 11 Unmodified _NKGKLLCYISL_ 0 0 0 nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR MULTI-MSMS UPN48_class_I_Rep_3 7 417.9205017089844 3 417.90917 1250.70568 0.017664 7.3818E-06 1.0782 0.0004506 1.0959 0.00045799 417.9098021960365 42.987 0.12967 46.629 46.566 46.696 3.6415 12 10 2 0 0 0 0.61292 1 7956 7956 2.2527 0.92309 1 40063 28409 4062 17963 17974 32935 32935 0.0903546276497309 NKGKNRLL 8 Unmodified _NKGKNRLL_ 0 0 0 REV__L1MCa_dup5932|chr13:112797306-112797840:+|1.3591107992427236|0.0313501611956137|5.44|150.0|3|1|sense REV__L1MCa_dup5932|chr13:112797306-112797840:+|1.3591107992427236|0.0313501611956137|5.44|150.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 471.7958068847656 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 85.662 1 89.268 88.768 89.768 3.6059 0 0 0 0.40404 1 20496 20496 5.2307 0 1 + 28410 27216 17964 17975 32936 32936 0.10392288636899139 NKGPPHPL 8 Unmodified _NKGPPHPL_ 0 0 0 REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|12|2|sense REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 430.2559814453125 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 48.839 1 48.839 48.339 49.339 0 0 0 0 0.40625 1 10208 10208 2.3027 0 1 + 28411 27442 17965 17976 32937 32937 0.03628952791427764 NKHHVKKKK 9 Unmodified _NKHHVKKKK_ 0 0 0 L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|158|3|sense L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|158|3|sense L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|158|3|sense MSMS UPN48_class_I_Rep_3 7 574.3372192382812 2 573.864549 1145.71454 NaN NaN NaN NaN NaN NaN NaN 18.485 1 22.072 21.572 22.572 3.5874 0 0 0 0.4007 1 1230 1230 0.52476 0.17413 1 28412 9607 17966 17977 32938 32938 0.14751617236311176 NKHNKTKR 8 Unmodified _NKHNKTKR_ 0 0 0 REV__L1PA7_dup8925|chrY:13263830-13266051:-|1.9539238049866807|0.1167637972376721|4.06|85.0|8|1|sense REV__L1PA7_dup8925|chrY:13263830-13266051:-|1.9539238049866807|0.1167637972376721|4.06|85.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 512.7697143554688 2 513.301781 1024.58901 -0.18763 -9.631E-05 0.76925 0.00039486 0.58162 0.00029855 513.3022797280535 31.883 0.026081 35.612 35.59 35.616 3.7293 4 2 2 0 0 0 0.72333 1 5408 5408 0.69038 0 1 24141 + 28413 30179 17967 17978 32939 32939 0.07769905380087039 NKHWLIRQ 8 Unmodified _NKHWLIRQ_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MSMS UPN47_class_I_Rep_1 2 547.7373046875 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 22.009 1 25.683 25.183 26.183 3.6749 0 0 0 0.40625 1 2486 2486 2.3027 0 1 28414 2922 17968 17979 32940 32940 0.07143379902504421 NKIFHKISNVL 11 Unmodified _NKIFHKISNVL_ 0 0 0 REV__L1MD_dup124|chr1:43843003-43843703:-|1.0028978314967|0.0154609062761642|6.02|151.0|1|1|sense REV__L1MD_dup124|chr1:43843003-43843703:-|1.0028978314967|0.0154609062761642|6.02|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 437.9278869628906 3 438.262712 1311.76631 -0.027794 -1.2181E-05 -1.6447 -0.0007208 -1.6725 -0.00073299 438.2618934038254 42.747 0.18789 46.255 46.185 46.373 3.5079 15 11 2 0 0 0 22.551 1 7958 7958 1.3296 0.11481 1 88645 + 28415 27260 17969 17980 32941 32941 0.12289316139572293 NKIFTEHLI 9 Unmodified _NKIFTEHLI_ 0 0 0 L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|35|1|sense L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|35|1|sense L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|35|1|sense MSMS UPN46_class_I_Rep_3 1 557.8157958984375 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 89.29 1 89.29 88.79 89.79 0 0 0 0 0.4007 1 21475 21475 0.52476 0 1 28416 8648 17970 17981 32942 32942 0.06598004885699993 NKIKTFLFIS 10 Unmodified _NKIKTFLFIS_ 0 0 0 nc|ENSG00000171320|Q56NI9-2|ESCO2;ENSG00000171320|ENST00000305188|ESCO2 nc|ENSG00000171320|Q56NI9-2|ESCO2 nc|ENSG00000171320|Q56NI9-2|ESCO2 MULTI-SECPEP UPN48_class_I_Rep_2 6 404.87994384765625 3 404.244658 1209.71214 0.032883 1.3293E-05 -2.4383 -0.00098568 -2.4054 -0.00097239 404.5782083015913 39.728 0.057739 43.47 43.417 43.474 3.7413 6 5 2 0 0 0 0.84575 1 7076 7076 1.4551 0.59074 1 17019 28417 4517 17971 17982 32943 32943 0.11567723987991485 NKIKTYLS 8 Unmodified _NKIKTYLS_ 0 0 0 REV__LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|66|2|sense REV__LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|66|2|sense MSMS UPN48_class_I_Rep_2 6 483.78448486328125 2 483.784567 965.554582 NaN NaN NaN NaN NaN NaN NaN 65.165 1 68.644 68.144 69.144 3.4792 0 0 0 0.40643 1 14792 14792 2.0598 0 1 + 28418 30887 17972 17983 32944 32944 0.07042644448608826 NKIKYLRIY 9 Unmodified _NKIKYLRIY_ 0 0 0 L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|139|3|sense;L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|91|2|sense L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|139|3|sense L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|139|3|sense MSMS UPN47_class_I_Rep_2 3 404.2483825683594 3 404.248403 1209.72338 NaN NaN NaN NaN NaN NaN NaN 38.752 1 42.131 41.631 42.631 3.3785 0 0 0 0.39887 1 7537 7537 0.96228 0.18574 1 28419 14993 17973 17984 32945 32945 0.12690546082126275 NKILYPFM 8 Unmodified _NKILYPFM_ 0 0 0 L1MCa_dup5960|chr14:30977818-30978751:+|2.3224133599193557|0.0126558626596854|7.52|151.0|19|2|sense L1MCa_dup5960|chr14:30977818-30978751:+|2.3224133599193557|0.0126558626596854|7.52|151.0|19|2|sense L1MCa_dup5960|chr14:30977818-30978751:+|2.3224133599193557|0.0126558626596854|7.52|151.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 513.2774047851562 2 513.278063 1024.54157 NaN NaN NaN NaN NaN NaN NaN 30.171 1 33.806 33.306 34.306 3.6351 0 0 0 0.40738 1 4376 4376 0.79363 0 1 28420 11834 17974 17985 32946 32946 0.030284900648666735 NKIPRNTV 8 Unmodified _NKIPRNTV_ 0 0 0 L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|34|1|sense;L1P3_dup682|chr3:196908842-196910335:+|7.077766643402289|0.2885488685750818|4.62|151.0|42|3|sense;L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|34|3|sense L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|34|1|sense L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|34|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.28021240234375 2 471.279983 940.545414 0.20692 9.7518E-05 -0.098497 -4.6419E-05 0.10842 5.1098E-05 471.2798424119405 83.408 0.82825 87.089 86.718 87.546 3.6814 127 94 2 0 0 0 0.82752 1 19871 19871 2.3027 0 1 219320 28421 13548 17975 17986 32947 32947 0.07276295882934392 NKIPRYKC 8 Unmodified _NKIPRYKC_ 0 0 0 HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|21|2|sense HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|21|2|sense HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 511.2848205566406 2 511.284211 1020.55387 NaN NaN NaN NaN NaN NaN NaN 39.663 1 43.318 42.818 43.818 3.6557 0 0 0 0.40625 1 6964 6964 2.3027 0 1 28422 8203 17976 17987 32948 32948 0.044415265278985316 NKISTRKSNG 10 Unmodified _NKISTRKSNG_ 0 0 0 REV__Tigger1_dup9033|chr12:32237180-32238663:+|1.3110158367889355|0.0256202893975063|5.68|151.0|43|3|sense REV__Tigger1_dup9033|chr12:32237180-32238663:+|1.3110158367889355|0.0256202893975063|5.68|151.0|43|3|sense MSMS UPN47_class_I_Rep_2 3 552.8120727539062 2 552.809636 1103.60472 NaN NaN NaN NaN NaN NaN NaN 33.971 1 37.411 36.911 37.911 3.4398 0 0 0 0.53105 1 6085 6085 1.3295 0.5359 1 + 28423 32556 17977 17988 32949 32949 0.05706147106457138 NKISWEWW 8 Unmodified _NKISWEWW_ 0 0 0 AluSx_dup35818|chr6:15292672-15292971:-|1.2068054426586712|0.0041709026658861|8.18|150.0|12|3|sense AluSx_dup35818|chr6:15292672-15292971:-|1.2068054426586712|0.0041709026658861|8.18|150.0|12|3|sense AluSx_dup35818|chr6:15292672-15292971:-|1.2068054426586712|0.0041709026658861|8.18|150.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 575.0111083984375 2 574.779816 1147.54508 NaN NaN NaN NaN NaN NaN NaN 106.97 1 106.97 106.47 107.47 0 0 0 0 0.40643 1 26095 26095 2.0598 0.73022 1 28424 279 17978 17989 32950 32950 -0.022791238369336497 NKIYLIFINQ 10 Unmodified _NKIYLIFINQ_ 0 0 0 REV__L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|105|3|sense REV__L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|105|3|sense MSMS UPN47_class_I_Rep_2 3 633.369873046875 2 633.366256 1264.71796 NaN NaN NaN NaN NaN NaN NaN 86.367 1 89.808 89.308 90.308 3.4407 0 0 0 0.53105 1 21482 21482 1.4819 0 1 + 28425 25783 17979 17990 32951 32951 0.09618822499669477 NKKAKPTR 8 Unmodified _NKKAKPTR_ 0 0 0 REV__HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|19|2|sense REV__HERV3-int_dup240|chr16:44715-46385:+|1.885542734740106|0.2007478883395759|3.23|151.0|19|2|sense MSMS UPN47_class_I_Rep_2 3 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 29.724 1 33.217 32.717 33.717 3.4923 0 0 0 0.40746 1 4800 4800 0.69038 0 1 + 28426 23584 17980 17991 32952 32952 0.1039228863688777 NKKASFAQRK 10 Unmodified _NKKASFAQRK_ 0 0 0 REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|35|3|sense REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 589.3431396484375 2 589.343646 1176.67274 0.40901 0.00024105 -1.2045 -0.00070986 -0.79547 -0.00046881 589.3427179849373 95.625 0.45061 99.242 99.114 99.565 3.6167 78 60 2 0 0 0 0.56333 1 23088 23088 1.4819 0.95714 1 99251 + 28427 28607 17981 17992 32953 32953 0.09147016757128767 NKKASFAQRK 10 Unmodified _NKKASFAQRK_ 0 0 0 REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|35|3|sense REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|35|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 589.343646 1176.67274 0.40901 0.00024105 -1.2045 -0.00070986 -0.79547 -0.00046881 589.3427179849373 95.625 0.45061 99.242 99.114 99.565 3.6167 -0.11519 -4.4951E-05 NaN 1.4819 78 60 2 NaN NaN NaN NaN 0 NaN NaN 0 99251 + 28428 28607 17981 17992 0.09147016757128767 NKKASFAQRK 10 Unmodified _NKKASFAQRK_ 0 0 0 REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|35|3|sense REV__L1MEf_dup11718|chr22:23228562-23229792:-|2.271462378949328|0.0175309730293408|7.02|151.0|35|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 589.343646 1176.67274 0.50995 0.00030053 -1.1367 -0.00066991 -0.62676 -0.00036938 589.3428643520003 95.564 0.43507 99.472 99.244 99.679 3.9084 0.11519 3.4942E-05 NaN 1.4819 90 60 2 NaN NaN NaN NaN 0 NaN NaN 0 120530 + 28429 28607 17981 17992 0.09147016757128767 NKKCRKSK 8 Unmodified _NKKCRKSK_ 0 0 0 L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|61|3|sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|61|3|sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|61|3|sense MSMS UPN46_class_I_Rep_3 1 496.7690124511719 2 496.295111 990.575668 NaN NaN NaN NaN NaN NaN NaN 81.534 1 81.534 81.034 82.034 0 0 0 0 0.40746 1 19258 19258 0.69038 0 1 28430 11608 17982 17993 32954 32954 0.08000331276491579 NKKERKTKIKT 11 Unmodified _NKKERKTKIKT_ 0 0 0 L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 458.9598693847656 3 458.624421 1372.85143 0.036629 1.6799E-05 0.23862 0.00010944 0.27525 0.00012623 458.62418595627827 101.48 0.23216 105.09 104.95 105.18 3.612 63 33 3 0 0 0 0.65674 1 24516 24516 2.6312 1.3016 1 1452500 28431 11090 17983 17994 32955 32955 0.17992061605355048 NKKERKTKIKT 11 Unmodified _NKKERKTKIKT_ 0 0 0 L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 458.6246337890625 3 458.624421 1372.85143 0.17503 8.0272E-05 -0.064147 -2.9419E-05 0.11088 5.0853E-05 458.6242516662728 101.21 0.62572 104.95 104.62 105.25 3.7417 181 92 3 0 0 0 0.65674 3 24023 23988;24023;24058 2.6312 1.3016 1 2282000 28432 11090 17983 17994 32956;32957;32958 32957 0.17992061605355048 NKKERKTKIKT 11 Unmodified _NKKERKTKIKT_ 0 0 0 L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 458.624421 1372.85143 -0.088145 -4.0425E-05 0.70116 0.00032157 0.61302 0.00028114 458.62458795819225 101.66 0.094887 105.14 105.12 105.22 3.4873 0.059773 0.0008593 NaN 2.6312 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 390490 28433 11090 17983 17994 0.17992061605355048 NKKERKTKIKT 11 Unmodified _NKKERKTKIKT_ 0 0 0 L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|99|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 458.624421 1372.85143 0.18126 8.3129E-05 0.11157 5.1167E-05 0.29282 0.0001343 458.62422974639156 101.34 0.4744 105.16 104.74 105.21 3.8153 0.070005 4.8094E-05 NaN 2.6312 118 68 2 NaN NaN NaN NaN 0 NaN NaN 0 1224000 28434 11090 17983 17994 0.17992061605355048 NKKFCWRA 8 Unmodified _NKKFCWRA_ 0 0 0 REV__HERVIP10FH-int_dup364|chr19:57802848-57803420:-|2.4540767574552365|0.2363624596160363|3.38|151.0|25|1|anti-sense REV__HERVIP10FH-int_dup364|chr19:57802848-57803420:-|2.4540767574552365|0.2363624596160363|3.38|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7765502929688 2 526.776554 1051.53855 NaN NaN NaN NaN NaN NaN NaN 25.334 1 29.103 28.603 29.603 3.769 0 0 0 0.40604 1 3065 3065 2.5775 0 1 + 28435 23773 17984 17995 32959 32959 0.014846597307268894 NKKFEELF 8 Unmodified _NKKFEELF_ 0 0 0 REV__L1MA7_dup7460|chr16:23850663-23852675:-|6.53033203180188|0.0345631697870924|7.56|151.0|137|3|anti-sense REV__L1MA7_dup7460|chr16:23850663-23852675:-|6.53033203180188|0.0345631697870924|7.56|151.0|137|3|anti-sense MSMS UPN47_class_I_Rep_2 3 527.7798461914062 2 527.782025 1053.5495 NaN NaN NaN NaN NaN NaN NaN 24.672 1 28.155 27.655 28.655 3.483 0 0 0 0.40604 1 3308 3308 2.5775 0 1 + 28436 25526 17985 17996 32960 32960 0.02486340585983271 NKKGIRDL 8 Unmodified _NKKGIRDL_ 0 0 0 REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF MSMS UPN46_class_I_Rep_3 1 472.2876892089844 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 91.326 1 91.326 90.826 91.826 0 0 0 0 0.40746 1 22055 22055 0.69038 0 1 + 28437 18072 17986 17997 32961 32961 0.08748582399982752 NKKGIRDL 8 Unmodified _NKKGIRDL_ 0 0 0 REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.28765869140625 2 472.287808 942.561064 0.18122 8.5587E-05 -0.05347 -2.5253E-05 0.12775 6.0333E-05 472.28771761839243 86.289 1.5919 89.905 89.439 91.031 3.6153 534 196 4 0 0 0 0.82752 1 21733 21733 0.69038 0 1 5200400 + 28438 18072 17986 17997 32962 32962 0.08748582399982752 NKKGRDKE 8 Unmodified _NKKGRDKE_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|56|2|sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|56|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7723083496094 2 487.772522 973.530492 -0.27809 -0.00013564 -0.090803 -4.4291E-05 -0.36889 -0.00017994 487.77246455873075 16.183 1.6642 16.183 15.587 17.251 0 384 197 3 0 0 0 0.82752 1 1209 1209 2.0598 0 1 297570 + 28439 29042 17987 17998 32963 32963 0.04266804014935133 NKKGRVTP 8 Unmodified _NKKGRVTP_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MSMS UPN47_class_I_Rep_1 2 450.27410888671875 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 84.701 1 88.292 87.792 88.792 3.5914 0 0 0 0.40746 1 21185 21185 0.69038 0 1 28440 609 17988 17999 32964 32964 0.08152313228504227 NKKGRVTP 8 Unmodified _NKKGRVTP_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MULTI-MSMS UPN47_class_I_Rep_3 4 450.27508544921875 2 450.274701 898.534849 -0.2022 -9.1044E-05 -0.13349 -6.0109E-05 -0.33569 -0.00015115 450.27459681165465 84.185 1.1377 87.546 87.086 88.224 3.3615 455 142 5 0 0 0 0.82752 1 21024 21024 0.69038 0 1 6870200 28441 609 17988 17999 32965 32965 0.08152313228504227 NKKIAEKSLKH 11 Unmodified _NKKIAEKSLKH_ 0 0 0 L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 648.3928833007812 2 648.393336 1294.77212 0.5846 0.00037905 -0.35072 -0.0002274 0.23388 0.00015165 648.3934355040695 100.19 1.1212 103.98 103.61 104.73 3.7942 280 154 3 0 0 0 0.65559 1 24827 24827 2.7352 1.2533 1 523440 28442 12156 17989 18000 32966 32966 0.13652414651210165 NKKIAEKSLKH 11 Unmodified _NKKIAEKSLKH_ 0 0 0 L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 648.3955078125 2 648.393336 1294.77212 0.51507 0.00033397 1.0165 0.00065909 1.5316 0.00099306 648.3946840386641 100.56 0.33284 104.03 103.92 104.25 3.4671 71 49 2 0 0 0 0.65821 1 24838 24838 2.4985 0 1 265650 28443 12156 17989 18000 32967 32967 0.13652414651210165 NKKIAEKSLKH 11 Unmodified _NKKIAEKSLKH_ 0 0 0 L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 648.3948364257812 2 648.393336 1294.77212 NaN NaN NaN NaN NaN NaN NaN 100.65 1 104.51 104.01 105.01 3.8537 0 0 0 0.38417 1 23820 23820 2.4985 0.84587 1 28444 12156 17989 18000 32968 32968 0.13652414651210165 NKKITGYYDNS 11 Unmodified _NKKITGYYDNS_ 0 0 0 L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 434.8824462890625 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 53.41 1 53.41 52.91 53.91 0 0 0 0 0.38417 1 11489 11489 1.1098 0.038292 1 28445 13366 17990 18001 32969 32969 -0.013567270243584062 NKKITGYYDNS 11 Unmodified _NKKITGYYDNS_ 0 0 0 L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense MSMS UPN47_class_I_Rep_1 2 434.88189697265625 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 36.669 1 40.338 39.838 40.838 3.6692 0 0 0 0.38417 1 6872 6872 1.1098 0.038292 1 28446 13366 17990 18001 32970 32970 -0.013567270243584062 NKKITGYYDNS 11 Unmodified _NKKITGYYDNS_ 0 0 0 L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense MSMS UPN47_class_I_Rep_3 4 434.88201904296875 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 51.021 1 54.238 53.738 54.738 3.2163 0 0 0 0.38417 1 11320 11320 1.1098 0.038292 1 28447 13366 17990 18001 32971 32971 -0.013567270243584062 NKKITGYYDNS 11 Unmodified _NKKITGYYDNS_ 0 0 0 L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense MSMS UPN48_class_I_Rep_2 6 434.88232421875 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 64.714 1 68.193 67.693 68.693 3.4792 0 0 0 0.38417 1 14653 14653 1.1098 0.038292 1 28448 13366 17990 18001 32972 32972 -0.013567270243584062 NKKITGYYDNS 11 Unmodified _NKKITGYYDNS_ 0 0 0 L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 434.8819885253906 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 63.227 1 66.736 66.236 67.236 3.5091 0 0 0 0.38417 1 14118 14118 1.1098 0.038292 1 28449 13366 17990 18001 32973 32973 -0.013567270243584062 NKKKEKKKKKY 11 Unmodified _NKKKEKKKKKY_ 0 0 0 REV__AluSz_dup93839|chr19:17084582-17084917:+|1.0765126357785202|0.0132125924867522|6.35|151.0|11|3|sense REV__AluSz_dup93839|chr19:17084582-17084917:+|1.0765126357785202|0.0132125924867522|6.35|151.0|11|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 483.7425537109375 3 483.980316 1448.91912 -0.099273 -4.8046E-05 1.3183 0.00063803 1.219 0.00058998 483.98092111294545 46.794 0.60271 50.489 50.351 50.954 3.6951 51 34 2 0 0 0 22.551 1 9957 9957 0.094841 0 1 296800 + 28450 17218 17991 18002 32974 32974 0.2126151153615865 NKKKEKKKKKY 11 Unmodified _NKKKEKKKKKY_ 0 0 0 REV__AluSz_dup93839|chr19:17084582-17084917:+|1.0765126357785202|0.0132125924867522|6.35|151.0|11|3|sense REV__AluSz_dup93839|chr19:17084582-17084917:+|1.0765126357785202|0.0132125924867522|6.35|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.9805908203125 3 483.980316 1448.91912 0.24727 0.00011968 0.89811 0.00043467 1.1454 0.00055434 483.9807396354355 50.905 0.37452 54.244 53.999 54.373 3.3386 27 20 2 0 0 0 0.68478 1 11239 11239 0.094841 0 1 135460 + 28451 17218 17991 18002 32975 32975 0.2126151153615865 NKKKELQQNH 10 Unmodified _NKKKELQQNH_ 0 0 0 REV__ENSG00000187672|ENST00000288221|ERC2 REV__ENSG00000187672|ENST00000288221|ERC2 MULTI-SECPEP UPN48_class_I_Rep_1 5 422.58160400390625 3 422.901954 1265.68403 -0.1056 -4.4657E-05 -0.56286 -0.00023803 -0.66846 -0.00028269 422.9014874498189 88.428 0.074051 92.051 91.985 92.059 3.6229 12 9 2 0 0 0 0.84575 1 21216 21216 0.69767 0 1 44719 + 28452 20937 17992 18003 32976 32976 0.06181794060626089 NKKKKGRC 8 Unmodified _NKKKKGRC_ 0 0 0 REV__L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|68|3|sense REV__L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|68|3|sense MSMS UPN47_class_I_Rep_1 2 481.2892761230469 2 481.289828 960.565103 NaN NaN NaN NaN NaN NaN NaN 58.877 1 62.294 61.794 62.794 3.4171 0 0 0 0.40746 1 13628 13628 0.69038 0 1 + 28453 28617 17993 18004 32977 32977 0.08324348622056732 NKKKKKKQSKL 11 Unmodified _NKKKKKKQSKL_ 0 0 0 REV__L1PA15_dup7709|chr17:61702185-61703052:-|1.4573152650334746|0.0035149289680567|8.7|151.0|1|1|sense REV__L1PA15_dup7709|chr17:61702185-61703052:-|1.4573152650334746|0.0035149289680567|8.7|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 453.3055114746094 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 111.12 1 114.75 114.25 115.25 3.6326 0 0 0 0.38417 1 26959 26959 0.08335 0 1 + 28454 29287 17994 18005 32978 32978 0.22873242364698854 NKKKKSCK 8 Unmodified _NKKKKSCK_ 0 0 0 REV__L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|4|1|sense REV__L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 482.2935791015625 2 482.292037 962.56952 NaN NaN NaN NaN NaN NaN NaN 35.828 1 39.504 39.004 40.004 3.6762 0 0 0 0.40659 1 6616 6616 1.8442 0 1 + 28455 24335 17995 18006 32979 32979 0.08673813044958933 NKKKLPHP 8 Unmodified _NKKKLPHP_ 0 0 0 REV__MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|11|3|sense REV__MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 481.3028259277344 2 481.300719 960.586885 NaN NaN NaN NaN NaN NaN NaN 89.094 1 92.767 92.267 93.267 3.6738 0 0 0 0.40738 1 22274 22274 0.79363 0 1 + 28456 31137 17996 18007 32980 32980 0.10501476642264151 NKKKQRKPAI 10 Unmodified _NKKKQRKPAI_ 0 0 0 REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|73|3|sense REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|73|3|sense MSMS UPN46_class_I_Rep_3 1 404.2633056640625 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 66.592 1 66.592 66.092 67.092 0 0 0 0 0.53105 1 15117 15117 0.69767 0 1 + 28457 27233 17997 18008 32981 32981 0.17048155579300328 NKKKTFTN 8 Unmodified _NKKKTFTN_ 0 0 0 REV__L1PA6_dup5695|chr19:54578136-54580192:-|1.998390614784669|0.0662767325430211|4.91|151.0|42|2|sense REV__L1PA6_dup5695|chr19:54578136-54580192:-|1.998390614784669|0.0662767325430211|4.91|151.0|42|2|sense MSMS UPN47_class_I_Rep_1 2 490.7367858886719 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 38.327 1 41.992 41.492 42.492 3.6652 0 0 0 0.40746 1 7373 7373 0.69038 0 1 + 28458 29943 17998 18009 32982 32982 0.05448876163097793 NKKLCLIRRYF 11 Unmodified _NKKLCLIRRYF_ 0 0 0 REV__L1MDa_dup1080|chr2:238087258-238087808:+|1.3423123089442148|0.1465959363044765|3.19|151.0|4|1|sense REV__L1MDa_dup1080|chr2:238087258-238087808:+|1.3423123089442148|0.1465959363044765|3.19|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 485.2854919433594 3 485.286863 1452.83876 NaN NaN NaN NaN NaN NaN NaN 35.964 1 39.64 39.14 40.14 3.6762 0 0 0 0.38417 1 6657 6657 1.4551 0.94916 1 + 28459 27494 17999 18010 32983 32983 0.13045326941482926 NKKLLMKLLI 10 Unmodified _NKKLLMKLLI_ 0 0 0 REV__L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|45|3|sense REV__L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|45|3|sense MSMS UPN48_class_I_Rep_1 5 405.2729187011719 3 405.273672 1212.79919 NaN NaN NaN NaN NaN NaN NaN 50.746 1 54.27 53.77 54.77 3.5246 0 0 0 0.53105 1 10395 10395 0.69767 0 1 + 28460 26065 18000 18011 32984 32984 0.20129806938052752 NKKMSRTR 8 Unmodified _NKKMSRTR_ 0 0 0 L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|110|3|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|110|3|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|110|3|sense MSMS UPN47_class_I_Rep_3 4 510.7897644042969 2 510.790192 1019.56583 NaN NaN NaN NaN NaN NaN NaN 81.237 1 84.56 84.06 85.06 3.3231 0 0 0 0.40746 1 20327 20327 0.69038 0 1 28461 15191 18001 18012 32985 32985 0.05683143271107838 NKKNKKHSRK 10 Unmodified _NKKNKKHSRK_ 0 0 0 REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 422.5924377441406 3 423.261705 1266.76329 -0.5647 -0.00023901 -0.2524 -0.00010683 -0.8171 -0.00034585 423.261703784212 49.355 0.35738 52.702 52.481 52.838 3.3465 35 23 2 0 0 0 0.84575 1 10730 10730 1.4551 0 1 117290 + 28462 22115 18002 18013 32986 32986 0.1405748580539239 NKKNKKHSRK 10 Unmodified _NKKNKKHSRK_ 0 0 0 REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 422.5924072265625 3 423.261705 1266.76329 -0.0097097 -4.1098E-06 -1.7259 -0.00073052 -1.7357 -0.00073463 423.26098965525796 48.393 0.23724 52.111 51.994 52.231 3.7175 25 17 2 0 0 0 0.84575 1 9692 9692 1.4551 0.12547 1 101210 + 28463 22115 18002 18013 32987 32987 0.1405748580539239 NKKNKQSY 8 Unmodified _NKKNKQSY_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|49|2|sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|49|2|sense MSMS UPN46_class_I_Rep_3 1 505.5373229980469 2 505.274898 1008.53524 NaN NaN NaN NaN NaN NaN NaN 76.618 1 76.618 76.118 77.118 0 0 0 0 0.40501 1 17882 17882 3.9444 0 1 + 28464 25612 18003 18014 32988 32988 0.031316881577026834 NKKPNVIP 8 Unmodified _NKKPNVIP_ 0 0 0 THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|34|3|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|34|3|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|34|3|sense MSMS UPN48_class_I_Rep_2 6 455.2822570800781 2 455.279452 908.544351 NaN NaN NaN NaN NaN NaN NaN 51.473 1 55.141 54.641 55.641 3.6679 0 0 0 0.40604 1 10613 10613 2.5775 0.27475 1 28465 32918 18004 18015 32989 32989 0.08642081514040001 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN47_class_I_Rep_2 3 484.7877502441406 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 37.794 1 41.182 40.682 41.682 3.3879 0 0 0 0.40404 1 7247 7247 5.2307 0.47466 1 + 28466 29405 18005 18016 32990 32990 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN47_class_I_Rep_2 3 484.78802490234375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 37.949 1 41.337 40.837 41.837 3.3879 0 0 0 0.40404 1 7294 7294 5.2307 0.47466 1 + 28467 29405 18005 18016 32991 32991 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN47_class_I_Rep_2 3 484.7877197265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 38.079 1 41.467 40.967 41.967 3.3879 0 0 0 0.40404 1 7334 7334 5.2307 0.47466 1 + 28468 29405 18005 18016 32992 32992 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_1 5 484.78863525390625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 43.03 1 46.541 46.041 47.041 3.5103 0 0 0 0.40404 1 8030 8030 5.2307 0.47466 1 + 28469 29405 18005 18016 32993 32993 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_1 5 484.7879333496094 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.074 1 60.569 60.069 61.069 3.4942 0 0 0 0.40404 1 12336 12336 5.2307 0.47466 1 + 28470 29405 18005 18016 32994 32994 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 484.7880554199219 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.496 1 54.191 53.691 54.691 3.6946 0 0 0 0.40404 1 10314 10314 5.2307 0.47466 1 + 28471 29405 18005 18016 32995 32995 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 484.787109375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 52.055 1 55.694 55.194 56.194 3.639 0 0 0 0.40364 1 10783 10783 5.7604 0.52976 1 + 28472 29405 18005 18016 32996 32996 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 484.78765869140625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.193 1 60.707 60.207 61.207 3.5142 0 0 0 0.40404 1 12350 12350 5.2307 0.47466 1 + 28473 29405 18005 18016 32997 32997 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 484.78778076171875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.324 1 60.838 60.338 61.338 3.5142 0 0 0 0.39819 1 12390 12390 8.5933 3.8373 1 + 28474 29405 18005 18016 32998 32998 0.07525787750944346 NKKPVVHF 8 Unmodified _NKKPVVHF_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_3 7 484.78790283203125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.845 1 54.456 53.956 54.956 3.6105 0 0 0 0.40404 1 10359 10359 5.2307 0.47466 1 + 28475 29405 18005 18016 32999 32999 0.07525787750944346 NKKQILVN 8 Unmodified _NKKQILVN_ 0 0 0 REV__Charlie10b_dup206|chr11:76085370-76085603:-|1.00816676553668|0.0098729972269793|6.67|151.0|7|3|sense REV__Charlie10b_dup206|chr11:76085370-76085603:-|1.00816676553668|0.0098729972269793|6.67|151.0|7|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.79803466796875 2 478.798009 955.581465 0.28386 0.00013591 0.016849 8.0675E-06 0.30071 0.00014398 478.79792054312003 62.072 0.17292 65.545 65.393 65.566 3.4738 16 11 2 0 0 0 0.82752 1 13838 13838 2.3027 0 1 61531 + 28476 17281 18006 18017 33000 33000 0.10189753059808027 NKKQNRRCYN 10 Unmodified _NKKQNRRCYN_ 0 0 0 L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|66|3|sense L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|66|3|sense L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|66|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 441.7879638671875 3 441.894805 1322.66259 -0.86566 -0.00038253 0.50867 0.00022478 -0.35699 -0.00015775 442.22956467435466 36.282 0.11297 39.536 39.427 39.54 3.2547 10 7 2 0 0 0 0.84575 1 6795 6795 0.56317 0 1 33451 28477 15063 18007 18018 33001 33001 0.014160857602746546 NKKQNRRCYN 10 Unmodified _NKKQNRRCYN_ 0 0 0 L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|66|3|sense L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|66|3|sense L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|66|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 441.894805 1322.66259 -0.66608 -0.00029434 0.14454 6.3873E-05 -0.52154 -0.00023047 441.89457362975884 36.128 0.079117 39.54 39.492 39.571 3.4114 0.0016725 -0.0003766 NaN 0.56317 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 23558 28478 15063 18007 18018 0.014160857602746546 NKKRAAILI 9 Unmodified _NKKRAAILI_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|140|3|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|140|3|sense MSMS UPN48_class_I_Rep_2 6 513.8406982421875 2 513.842751 1025.67095 NaN NaN NaN NaN NaN NaN NaN 72.509 1 76.074 75.574 76.574 3.5645 0 0 0 0.39428 1 16973 16973 2.0598 0.21551 1 + 28479 24896 18008 18019 33002 33002 0.15914007739161207 NKKRKHKRKLN 11 Unmodified _NKKRKHKRKLN_ 0 0 0 REV__ENSG00000175931|ENST00000319380|UBE2O REV__ENSG00000175931|ENST00000319380|UBE2O MSMS UPN47_class_I_Rep_1 2 483.9813537597656 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 44.603 1 48.3 47.8 48.8 3.697 0 0 0 0.38417 1 9289 9289 0.50596 0.41111 1 + 28480 20572 18009 18020 33003 33003 0.2099310092187352 NKKRNLVV 8 Unmodified _NKKRNLVV_ 0 0 0 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant;nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant MSMS UPN47_class_I_Rep_1 2 485.811767578125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 82.814 1 86.352 85.852 86.852 3.5386 0 0 0 0.40625 1 20698 20698 2.3027 0.4585 1 28481 945 18010 18021 33004 33004 0.12232861670997863 NKKRNLVV 8 Unmodified _NKKRNLVV_ 0 0 0 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant;nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 84.426 1 87.787 87.287 88.287 3.3615 0 0 0 0.39819 1 21191 21191 8.5933 1.304 1 28482 945 18010 18021 33005 33005 0.12232861670997863 NKKRNLVV 8 Unmodified _NKKRNLVV_ 0 0 0 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant;nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant MSMS UPN47_class_I_Rep_3 4 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 84.553 1 87.915 87.415 88.415 3.3615 0 0 0 0.40404 1 21224 21224 5.2307 0 1 28483 945 18010 18021 33006 33006 0.12232861670997863 NKKRNLVV 8 Unmodified _NKKRNLVV_ 0 0 0 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant;nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1 ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant ITIH1|p.V789M|1|0.04|ENSG00000055957|chr3:52790792-52790792|G/A|missense_variant MSMS UPN48_class_I_Rep_3 7 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 79.545 1 83.187 82.687 83.687 3.6423 0 0 0 0.40746 1 18862 18862 0.69038 0 1 28484 945 18010 18021 33007 33007 0.12232861670997863 NKKSLVTK 8 Unmodified _NKKSLVTK_ 0 0 0 REV__L1P3_dup1436|chr6:154781099-154781616:+|1.0151658880547338|0.0315581632271562|5.01|151.0|8|2|sense REV__L1P3_dup1436|chr6:154781099-154781616:+|1.0151658880547338|0.0315581632271562|5.01|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 459.2938537597656 2 459.292559 916.570566 NaN NaN NaN NaN NaN NaN NaN 101.34 1 104.81 104.31 105.31 3.4671 0 0 0 0.40746 1 24985 24985 0.69038 0 1 + 28485 28870 18011 18022 33008 33008 0.10894350685532572 NKKSRRLFF 9 Unmodified _NKKSRRLFF_ 0 0 0 REV__AluSg_dup29590|chr16:66562092-66562352:-|1.1068638513188322|0.309334666770916|1.84|150.0|12|1|anti-sense REV__AluSg_dup29590|chr16:66562092-66562352:-|1.1068638513188322|0.309334666770916|1.84|150.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 598.358642578125 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 85.321 1 88.693 88.193 89.193 3.3716 0 0 0 0.38478 1 21382 21382 4.3292 0.73274 1 + 28486 17096 18012 18023 33009 33009 0.10899910999410167 NKKTKIAIA 9 Unmodified _NKKTKIAIA_ 0 0 0 REV__L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|94|3|sense REV__L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|94|3|sense MSMS UPN47_class_I_Rep_1 2 493.8214416503906 2 493.821484 985.628415 NaN NaN NaN NaN NaN NaN NaN 29.042 1 32.8 32.3 33.3 3.7578 0 0 0 0.4029 1 4558 4558 0 0 1 + 28487 30424 18013 18024 33010 33010 0.13502612610909637 NKKVGLAL 8 Unmodified _NKKVGLAL_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-SECPEP UPN48_class_I_Rep_2 6 422.2535705566406 2 421.776545 841.538538 -0.015925 -6.7167E-06 0.049151 2.0731E-05 0.033227 1.4014E-05 421.7765133570299 48.313 0.44799 52.049 51.719 52.167 3.7361 43 30 2 0 0 0 0.72333 1 9636 9636 4.756 0 1 93559 28488 787 18014 18025 33011 33011 0.1114298300237806 NKKVGLAL 8 Unmodified _NKKVGLAL_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-SECPEP UPN48_class_I_Rep_3 7 422.25360107421875 2 421.776545 841.538538 0.023372 9.8579E-06 0.036385 1.5347E-05 0.059758 2.5204E-05 421.7764571537109 48.38 0.5522 52.013 51.761 52.314 3.6339 49 39 2 0 0 0 0.72333 1 9627 9627 8.5933 0 1 116770 28489 787 18014 18025 33012 33012 0.1114298300237806 NKKVGLAL 8 Unmodified _NKKVGLAL_ 0 0 0 nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 nc|ENSG00000013374|Q9Y5A7-2|NUB1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 421.776545 841.538538 -0.1279 -5.3947E-05 -0.085844 -3.6207E-05 -0.21375 -9.0154E-05 421.7765198087941 48.491 0.46512 52.015 51.795 52.261 3.5239 -0.010755 -7.7662E-05 NaN 4.756 38 28 2 NaN NaN NaN NaN 0 NaN NaN 0 94445 28490 787 18014 18025 0.1114298300237806 NKKYFKLR 8 Unmodified _NKKYFKLR_ 0 0 0 Tigger1_dup3008|chr4:37608931-37610449:+|1.4320577732203337|0.0822263247265551|4.12|151.0|15|1|sense Tigger1_dup3008|chr4:37608931-37610449:+|1.4320577732203337|0.0822263247265551|4.12|151.0|15|1|sense Tigger1_dup3008|chr4:37608931-37610449:+|1.4320577732203337|0.0822263247265551|4.12|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 548.835205078125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 33.951 1 33.951 33.451 34.451 0 0 0 0 0.40746 1 6003 6003 0.69038 0 1 28491 33071 18015 18026 33013 33013 0.1112972122211886 NKLAILLI 8 Unmodified _NKLAILLI_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|102|1|anti-sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|102|1|anti-sense MSMS UPN48_class_I_Rep_2 6 449.3271789550781 2 449.310221 896.605889 NaN NaN NaN NaN NaN NaN NaN 108.42 1 112.09 111.59 112.59 3.6746 0 0 0 0.40746 1 25719 25719 0.69038 0 1 + 28492 26666 18016 18027 33014 33014 0.15345013213345737 NKLARPNG 8 Unmodified _NKLARPNG_ 0 0 0 REV__Tigger1_dup11514|chr20:8385972-8387738:-|5.070867112938558|0.0194549401565531|8.03|151.0|25|2|sense REV__Tigger1_dup11514|chr20:8385972-8387738:-|5.070867112938558|0.0194549401565531|8.03|151.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 435.2509765625 2 435.251226 868.487899 0.11014 4.7938E-05 -0.32721 -0.00014242 -0.21707 -9.4482E-05 435.25098113718747 73.499 0.57475 73.499 73.097 73.672 0 119 60 3 0 0 0 0.82752 1 17045 17045 2.3027 2.3027 1 261130 + 28493 32360 18017 18028 33015 33015 0.04839453677379879 NKLEKEKEK 9 Unmodified _NKLEKEKEK_ 0 0 0 ENSG00000112305|ENST00000370455|SMAP1 ENSG00000112305|ENST00000370455|SMAP1 ENSG00000112305|ENST00000370455|SMAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 573.8313598632812 2 573.32987 1144.64519 0.40821 0.00023404 -0.41768 -0.00023947 -0.0094636 -5.4258E-06 573.3294175141109 89.265 1.0146 92.89 92.069 93.084 3.6255 166 122 2 0 0 0 0.47197 1 21432 21432 3.5965 0 1 195980 28494 2009 18018 18029 33016 33016 0.0786506870622361 NKLGLQGN 8 Unmodified _NKLGLQGN_ 0 0 0 L1M3_dup463|chr1:247166877-247167300:+|2.0648715765467305|0.1403286362245562|3.88|151.0|4|1|sense L1M3_dup463|chr1:247166877-247167300:+|2.0648715765467305|0.1403286362245562|3.88|151.0|4|1|sense L1M3_dup463|chr1:247166877-247167300:+|2.0648715765467305|0.1403286362245562|3.88|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 421.82049560546875 2 422.237784 842.461016 NaN NaN NaN NaN NaN NaN NaN 77.359 1 77.359 76.859 77.859 0 0 0 0 0.40404 1 18079 18079 5.2307 0 1 28495 8770 18019 18030 33017 33017 0.03348345066183356 NKLIKEMV 8 Unmodified _NKLIKEMV_ 0 0 0 nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1 nc|ENSG00000100083|Q9UJY5-4|GGA1 nc|ENSG00000100083|Q9UJY5-4|GGA1 MSMS UPN47_class_I_Rep_3 4 487.7913513183594 2 487.788795 973.563038 NaN NaN NaN NaN NaN NaN NaN 72.895 1 76.122 75.622 76.622 3.2271 0 0 0 0.40604 1 17970 17970 2.5775 0 1 28496 1471 18020 18031 33018 33018 0.0751987509358969 NKLKHKQKR 9 Unmodified _NKLKHKQKR_ 0 0 0 REV__L1MD3_dup1721|chr6:34906517-34907348:+|1.1154301893878544|0.0362145309387839|4.94|151.0|18|2|sense REV__L1MD3_dup1721|chr6:34906517-34907348:+|1.1154301893878544|0.0362145309387839|4.94|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 590.3778686523438 2 590.375281 1178.73601 NaN NaN NaN NaN NaN NaN NaN 51.295 1 54.906 54.406 55.406 3.6105 0 0 0 0.39518 1 10497 10497 1.8442 0.6509 1 + 28497 27474 18021 18032 33019 33019 0.15379002265035524 NKLKHLGM 8 Unmodified _NKLKHLGM_ 0 0 0 REV__L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|90|3|sense REV__L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|90|3|sense MSMS UPN48_class_I_Rep_2 6 470.7725524902344 2 470.77348 939.532406 NaN NaN NaN NaN NaN NaN NaN 81.413 1 85.07 84.57 85.57 3.6567 0 0 0 0.40738 1 19325 19325 0.79363 0 1 + 28498 25407 18022 18033 33020 33020 0.06022141499192912 NKLKRKRHRIT 11 Unmodified _NKLKRKRHRIT_ 0 0 0 REV__L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|41|3|sense REV__L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|41|3|sense MSMS UPN47_class_I_Rep_1 2 483.9805908203125 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 44.963 1 48.663 48.163 49.163 3.6999 0 0 0 0.38417 1 9399 9399 0.50596 0.41111 1 + 28499 28433 18023 18034 33021 33021 0.20993100921850782 NKLKRKRHRIT 11 Unmodified _NKLKRKRHRIT_ 0 0 0 REV__L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|41|3|sense REV__L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|41|3|sense MSMS UPN47_class_I_Rep_2 3 483.9808044433594 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 54.083 1 57.402 56.902 57.902 3.3187 0 0 0 0.38417 1 12198 12198 0.50596 0.41111 1 + 28500 28433 18023 18034 33022 33022 0.20993100921850782 NKLKRKRHRIT 11 Unmodified _NKLKRKRHRIT_ 0 0 0 REV__L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|41|3|sense REV__L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|41|3|sense MSMS UPN47_class_I_Rep_3 4 483.98138427734375 3 483.979421 1448.91643 NaN NaN NaN NaN NaN NaN NaN 47.991 1 51.232 50.732 51.732 3.2405 0 0 0 0.38417 1 10395 10395 0.50596 0.41111 1 + 28501 28433 18023 18034 33023 33023 0.20993100921850782 NKLLLLLI 8 Unmodified _NKLLLLLI_ 0 0 0 REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense MSMS UPN47_class_I_Rep_2 3 470.3319396972656 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.125 1 98.6 98.1 99.1 3.4753 0 0 0 0.40581 1 23423 23423 2.8892 0 1 + 28502 32763 18024 18035 33024 33024 0.18105872764476771 NKLLLLLI 8 Unmodified _NKLLLLLI_ 0 0 0 REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 470.3323669433594 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 94.882 1 98.289 97.789 98.789 3.4068 0 0 0 0.4032 1 23604 23604 6.3541 0 1 + 28503 32763 18024 18035 33025 33025 0.18105872764476771 NKLLLLLI 8 Unmodified _NKLLLLLI_ 0 0 0 REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 470.3319396972656 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 95.2 1 98.609 98.109 99.109 3.4095 0 0 0 0.4032 1 23674 23674 6.3541 0 1 + 28504 32763 18024 18035 33026 33026 0.18105872764476771 NKLLLLLI 8 Unmodified _NKLLLLLI_ 0 0 0 REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 470.33154296875 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 93.762 1 97.532 97.032 98.032 3.77 0 0 0 0.40581 1 22295 22295 2.8892 0 1 + 28505 32763 18024 18035 33027 33027 0.18105872764476771 NKLMTGLLT 9 Unmodified _NKLMTGLLT_ 0 0 0 REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|13|2|sense REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 495.8553161621094 2 495.786253 989.557952 NaN NaN NaN NaN NaN NaN NaN 23.015 1 26.658 26.158 27.158 3.6432 0 0 0 0.39518 1 2439 2439 1.8442 0.19162 1 + 28506 23509 18025 18036 33028 33028 0.0627557123096949 NKLNLKNYL 9 Unmodified _NKLNLKNYL_ 0 0 0 REV__MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|58|2|anti-sense REV__MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|58|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.3276977539062 2 560.329673 1118.64479 0.32683 0.00018313 -1.0603 -0.00059411 -0.73347 -0.00041098 560.3285479408155 53.665 1.0477 57.193 56.811 57.858 3.5278 74 61 2 0 0 0 0.41259 1 12183 12183 7.2892 0 1 128290 + 28507 31520 18026 18037 33029 33029 0.09021693777026485 NKLPNRAPTL 10 Unmodified _NKLPNRAPTL_ 0 0 0 REV__LTR16E1_dup971|chr6:119186315-119186615:-|1.2332672067202493|0.164989058412974|2.9|149.0|14|2|anti-sense REV__LTR16E1_dup971|chr6:119186315-119186615:-|1.2332672067202493|0.164989058412974|2.9|149.0|14|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3344116210938 2 562.332747 1122.65094 0.080281 4.5145E-05 3.4411 0.001935 3.5213 0.0019802 562.3343228566946 25.315 0.052929 25.315 25.274 25.327 0 8 4 3 0 0 0 0.56333 1 3456 3456 1.4819 0 1 104200 + 28508 30860 18027 18038 33030 33030 0.09452212008568495 NKLPVRQCQ 9 Unmodified _NKLPVRQCQ_ 0 0 0 ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346.11,USP42,chr7,+,I7.1,6135952,6139091|24|5.38|1|intron;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENST00000521713.1_1_7:6179681-6199085:+|nuORF MSMS UPN48_class_I_Rep_2 6 543.286865234375 2 543.29785 1084.58115 NaN NaN NaN NaN NaN NaN NaN 33.794 1 37.454 36.954 37.954 3.6607 0 0 0 0.39518 1 5373 5373 1.8442 0.19162 1 28509 1784 18028 18039 33031 33031 0.04224010068287498 NKLVGWRW 8 Unmodified _NKLVGWRW_ 0 0 0 nc|ENSG00000185652|P20783|NTF3;ENSG00000185652|ENST00000423158|NTF3 nc|ENSG00000185652|P20783|NTF3 nc|ENSG00000185652|P20783|NTF3 MSMS UPN47_class_I_Rep_1 2 529.7978515625 2 529.798343 1057.58213 NaN NaN NaN NaN NaN NaN NaN 71.742 1 75.117 74.617 75.617 3.3751 0 0 0 0.40625 1 17511 17511 2.3027 0.82083 1 28510 5113 18029 18040 33032 33032 0.05564592499490573 NKMHKVLI 8 Unmodified _NKMHKVLI_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MSMS UPN48_class_I_Rep_1 5 491.7989807128906 2 491.796955 981.579357 NaN NaN NaN NaN NaN NaN NaN 59.321 1 62.801 62.301 63.301 3.4801 0 0 0 0.39819 1 13024 13024 8.5933 0 1 + 28511 19304 18030 18041 33033 33033 0.08783001050358052 NKMLRNKFK 9 Unmodified _NKMLRNKFK_ 0 0 0 L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|36|2|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|36|2|sense L1MB4_dup6356|chr12:96274701-96276496:+|1.885171744532132|0.0937372102702491|4.33|151.0|36|2|sense MSMS UPN47_class_I_Rep_3 4 589.8449096679688 2 589.844968 1177.67538 NaN NaN NaN NaN NaN NaN NaN 83.047 1 86.384 85.884 86.884 3.337 0 0 0 0.4007 1 20823 20823 0.52476 0 1 28512 10546 18031 18042 33034 33034 0.09365148890401542 NKNITSKIK 9 Unmodified _NKNITSKIK_ 0 0 0 REV__L1PA16_dup12164|chr15:49849892-49852005:+|3.4369386557288006|0.0485668527300011|6.15|151.0|137|3|anti-sense REV__L1PA16_dup12164|chr15:49849892-49852005:+|3.4369386557288006|0.0485668527300011|6.15|151.0|137|3|anti-sense MSMS UPN48_class_I_Rep_3 7 523.3041381835938 2 523.321848 1044.62914 NaN NaN NaN NaN NaN NaN NaN 80.502 1 84.165 83.665 84.665 3.6635 0 0 0 0.38916 1 19050 19050 3.2813 0 1 + 28513 29341 18032 18043 33035 33035 0.10861407259972111 NKNKFILYSS 10 Unmodified _NKNKFILYSS_ 0 0 0 L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|7|1|sense L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|7|1|sense L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 405.2118835449219 3 405.224034 1212.65027 NaN NaN NaN NaN NaN NaN NaN 95.237 1 99.002 98.502 99.502 3.7648 0 0 0 0.53105 1 23644 23644 0.62683 0 1 28514 12794 18033 18044 33036 33036 0.052453725688792474 NKNKKRHIKKH 11 Unmodified _NKNKKRHIKKH_ 0 0 0 HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|18|1|sense HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|18|1|sense HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|18|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 478.3027038574219 3 477.632021 1429.87423 0.25624 0.00012239 -2.4002 -0.0011464 -2.144 -0.001024 477.6307387024454 65.33 0.087891 68.809 68.779 68.867 3.4792 6 5 2 0 0 0 22.551 1 14858 14858 2.2527 1.2392 1 49397 28515 8248 18034 18045 33037 33037 0.17649125513480612 NKNKNLQV 8 Unmodified _NKNKNLQV_ 0 0 0 L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|1|1|sense L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|1|1|sense L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 479.27734375 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 75.716 1 79.215 78.715 79.715 3.4996 0 0 0 0.4044 1 17955 17955 4.756 0 1 28516 14119 18035 18046 33038 33038 0.060319920203255606 NKNKVRSI 8 Unmodified _NKNKVRSI_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|12|1|sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.79364013671875 2 479.793258 957.571963 0.26577 0.00012751 -0.45787 -0.00021968 -0.19211 -9.2171E-05 479.7930505279679 87.273 0.17849 87.273 87.216 87.394 0 21 16 2 0 0 0 0.82752 1 20898 20898 2.3027 0 1 163620 + 28517 25386 18036 18047 33039 33039 0.0914798477426757 NKNPIRKWAKT 11 Unmodified _NKNPIRKWAKT_ 0 0 0 L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|30|2|sense L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|30|2|sense L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|30|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 451.9326171875 3 452.601727 1354.78335 0.19167 8.6751E-05 -0.76177 -0.00034478 -0.5701 -0.00025803 452.601271220138 93.785 0.062462 93.785 93.764 93.827 0 6 4 2 0 0 0 22.551 1 22741 22741 0.45452 0 1 150950 28518 11252 18037 18048 33040 33040 0.12015236745355651 NKNWKQPRH 9 Unmodified _NKNWKQPRH_ 0 0 0 L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|18|1|sense L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|18|1|sense L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 604.3248901367188 2 604.325788 1206.63702 NaN NaN NaN NaN NaN NaN NaN 37.575 1 37.575 37.075 38.075 0 0 0 0 0.4007 1 7078 7078 0.52476 0 1 28519 11375 18038 18049 33041 33041 0.04196979300127168 NKQHIQAFY 9 Unmodified _NKQHIQAFY_ 0 0 0 REV__Tigger1_dup10371|chr15:49826457-49827211:-|1.5602204035177678|0.016654960314978|6.55|150.0|54|3|anti-sense REV__Tigger1_dup10371|chr15:49826457-49827211:-|1.5602204035177678|0.016654960314978|6.55|150.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 574.7955322265625 2 574.795998 1147.57744 NaN NaN NaN NaN NaN NaN NaN 60.12 1 63.518 63.018 64.018 3.3982 0 0 0 0.39428 1 14011 14011 2.0598 0.21551 1 + 28520 32326 18039 18050 33042 33042 0.00955663566082876 NKQKHKKDIK 10 Unmodified _NKQKHKKDIK_ 0 0 0 REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|3|1|sense REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 422.9266662597656 3 422.926211 1265.7568 NaN NaN NaN NaN NaN NaN NaN 53.196 1 53.196 52.696 53.696 0 0 0 0 0.53105 1 11430 11430 3.0723 0.81953 1 + 28521 27631 18040 18051 33043 33043 0.13455547854027827 NKQKIYTLT 9 Unmodified _NKQKIYTLT_ 0 0 0 Tigger3b_dup2885|chr7:77080951-77081630:+|1.14786386492888|0.2868776306609575|2.0|151.0|31|1|anti-sense Tigger3b_dup2885|chr7:77080951-77081630:+|1.14786386492888|0.2868776306609575|2.0|151.0|31|1|anti-sense Tigger3b_dup2885|chr7:77080951-77081630:+|1.14786386492888|0.2868776306609575|2.0|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 555.3233642578125 2 554.821681 1107.62881 0.53342 0.00029595 0.23804 0.00013207 0.77145 0.00042802 554.8218094273309 54.813 0.61082 58.321 57.947 58.558 3.5082 83 43 2 0 0 0 0.36392 1 11540 11540 10.074 0 1 282900 28522 33379 18041 18052 33044 33044 0.07929987540137517 NKQKQHCLL 9 Unmodified _NKQKQHCLL_ 0 0 0 REV__ENST00000547611.5_1_12:95611639-95668525:+|nuORF REV__ENST00000547611.5_1_12:95611639-95668525:+|nuORF MSMS UPN47_class_I_Rep_1 2 556.306396484375 2 556.305675 1110.5968 NaN NaN NaN NaN NaN NaN NaN 63.874 1 67.229 66.729 67.729 3.3557 0 0 0 0.36505 1 15142 15142 7.2892 0 1 + 28523 22946 18042 18053 33045 33045 0.04592296585337863 NKQLQQVY 8 Unmodified _NKQLQQVY_ 0 0 0 L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|20|2|sense L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|20|2|sense L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.7778625488281 2 510.777274 1019.53999 -0.008913 -4.5525E-06 -0.016842 -8.6023E-06 -0.025755 -1.3155E-05 510.7771543234577 46.329 0.72511 50.029 49.719 50.444 3.6999 79 48 2 0 0 0 0.82752 2 9749 9749;9789 9.3474 5.2307 1 149590 28524 11121 18043 18054 33046;33047 33046 0.031005723004682295 NKQLQQVY 8 Unmodified _NKQLQQVY_ 0 0 0 L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|20|2|sense L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|20|2|sense L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.777099609375 2 510.777274 1019.53999 0.13846 7.072E-05 -0.082428 -4.2102E-05 0.056028 2.8618E-05 510.7771347038273 46.828 0.68089 50.071 49.715 50.396 3.2439 70 41 2 0 0 0 0.82752 1 10060 10060 14.582 2.0501 1 174320 28525 11121 18043 18054 33048 33048 0.031005723004682295 NKQVLKECW 9 Unmodified _NKQVLKECW_ 0 0 0 L1MC4_dup5752|chr3:197095746-197096339:-|1.0482193151358743|0.0380999393901141|4.78|151.0|8|1|sense L1MC4_dup5752|chr3:197095746-197096339:-|1.0482193151358743|0.0380999393901141|4.78|151.0|8|1|sense L1MC4_dup5752|chr3:197095746-197096339:-|1.0482193151358743|0.0380999393901141|4.78|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 574.2981567382812 2 574.300059 1146.58556 NaN NaN NaN NaN NaN NaN NaN 55.635 1 59.143 58.643 59.643 3.5082 0 0 0 0.39598 1 11894 11894 1.6526 0 1 28526 11511 18044 18055 33049 33049 0.018134744912003953 NKRAKTVVL 9 Unmodified _NKRAKTVVL_ 0 0 0 ENST00000506991.1_1_4:139402677-139402851:-|nuORF;ENSG00000104442|ENST00000276569|ARMC1 ENST00000506991.1_1_4:139402677-139402851:-|nuORF ENST00000506991.1_1_4:139402677-139402851:-|nuORF MSMS UPN47_class_I_Rep_1 2 514.8306274414062 2 514.832383 1027.65021 NaN NaN NaN NaN NaN NaN NaN 65.745 1 69.103 68.603 69.603 3.3576 0 0 0 0.38299 1 15702 15702 4.756 1.8668 1 28527 1690 18045 18056 33050 33050 0.13749417359508698 NKRAPKQA 8 Unmodified _NKRAPKQA_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MSMS UPN48_class_I_Rep_3 7 456.77215576171875 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 78.148 1 81.77 81.27 82.27 3.6216 0 0 0 0.40746 1 18494 18494 0.69038 0 1 28528 2509 18046 18057 33051 33051 0.07079429085740685 NKRFIAIK 8 Unmodified _NKRFIAIK_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|140|3|sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|140|3|sense MSMS UPN48_class_I_Rep_2 6 494.85821533203125 2 495.316369 988.618185 NaN NaN NaN NaN NaN NaN NaN 97.898 1 101.68 101.18 102.18 3.779 0 0 0 0.40746 1 23256 23256 0.69038 0 1 + 28529 29331 18047 18058 33052 33052 0.12342049676351508 NKRIRHLIIT 10 Unmodified _NKRIRHLIIT_ 0 0 0 REV__L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|81|2|sense REV__L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|81|2|sense MSMS UPN46_class_I_Rep_3 1 632.4022216796875 2 632.404038 1262.79352 NaN NaN NaN NaN NaN NaN NaN 99.202 1 99.202 98.702 99.702 0 0 0 0 0.53105 1 24161 24161 1.6526 1.1279 1 + 28530 30314 18048 18059 33053 33053 0.17263844470608092 NKRKERLFHKQ 11 Unmodified _NKRKERLFHKQ_ 0 0 0 MER41A_dup101|chr1:155365986-155366498:+|2.500716346506477|0.014586601754543|7.42|151.0|35|3|anti-sense MER41A_dup101|chr1:155365986-155366498:+|2.500716346506477|0.014586601754543|7.42|151.0|35|3|anti-sense MER41A_dup101|chr1:155365986-155366498:+|2.500716346506477|0.014586601754543|7.42|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_1 2 495.2944641113281 3 495.291664 1482.85316 NaN NaN NaN NaN NaN NaN NaN 34.608 1 38.294 37.794 38.794 3.6859 0 0 0 0.38417 1 6249 6249 1.2148 0.76031 1 28531 15971 18049 18060 33054 33054 0.13105115413964086 NKRKVRRH 8 Unmodified _NKRKVRRH_ 0 0 0 REV__L1M1_dup1856|chr3:149935119-149937580:-|3.5466020795048263|0.1489175146158604|4.57|151.0|78|3|sense REV__L1M1_dup1856|chr3:149935119-149937580:-|3.5466020795048263|0.1489175146158604|4.57|151.0|78|3|sense MSMS UPN47_class_I_Rep_2 3 547.3323364257812 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 87.446 1 90.893 90.393 91.393 3.4471 0 0 0 0.40746 1 21739 21739 0.69038 0.088878 1 + 28532 24029 18050 18061 33055 33055 0.13144695636560755 NKRKWPVRLA 10 Unmodified _NKRKWPVRLA_ 0 0 0 REV__ENST00000356458.6_1_2:55186284-55189696:+|nuORF REV__ENST00000356458.6_1_2:55186284-55189696:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 422.5923767089844 3 423.263046 1266.76731 0.014093 5.965E-06 -4.0587 -0.0017179 -4.0446 -0.0017119 423.26132519306594 63.681 0.076458 67.139 67.102 67.178 3.4578 7 5 2 0 0 0 0.84575 1 14362 14362 1.5923 0.13716 1 51362 + 28533 21866 18051 18062 33056 33056 0.14459575299133576 NKRKWPVRLA 10 Unmodified _NKRKWPVRLA_ 0 0 0 REV__ENST00000356458.6_1_2:55186284-55189696:+|nuORF REV__ENST00000356458.6_1_2:55186284-55189696:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 422.5924987792969 3 423.263046 1266.76731 0.035331 1.4954E-05 -0.97801 -0.00041395 -0.94267 -0.000399 423.26228951335764 46.569 0.1366 50.205 50.123 50.259 3.6363 10 7 2 0 0 0 0.84575 1 9051 9051 3.0723 1.6171 1 66879 + 28534 21866 18051 18062 33057 33057 0.14459575299133576 NKRKYEKS 8 Unmodified _NKRKYEKS_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|25|1|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|25|1|sense MSMS UPN46_class_I_Rep_3 1 526.7972412109375 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 116.96 1 116.96 116.46 117.46 0 0 0 0 0.40625 1 28973 28973 2.3027 0 1 + 28535 27369 18052 18063 33058 33058 0.05371663566097595 NKRLRPRVRN 10 Unmodified _NKRLRPRVRN_ 0 0 0 REV__AluJb_dup3855|chr1:44533209-44533513:+|2.1392594825809828|0.0014721641033894|10.5|150.0|12|3|sense REV__AluJb_dup3855|chr1:44533209-44533513:+|2.1392594825809828|0.0014721641033894|10.5|150.0|12|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 436.6083068847656 3 436.940966 1307.80107 0.12946 5.6568E-05 1.2343 0.00053931 1.3638 0.00059588 437.2757299017536 60.429 0.17557 63.946 63.791 63.967 3.5169 24 14 2 0 0 0 0.84575 1 13273 13273 0.62683 0.12087 1 81684 + 28536 16944 18053 18064 33059 33059 0.1594799679087373 NKRPESSRRR 10 Unmodified _NKRPESSRRR_ 0 0 0 REV__ENST00000466510.5_1_22:46711975-46722552:+|nuORF REV__ENST00000466510.5_1_22:46711975-46722552:+|nuORF MSMS UPN46_class_I_Rep_3 1 643.3628540039062 2 643.363433 1284.71231 NaN NaN NaN NaN NaN NaN NaN 19.902 1 19.902 19.402 20.402 0 0 0 0 0.53105 1 1977 1977 1.4819 0 1 + 28537 17850 18054 18065 33060 33060 0.08134536760530864 NKRPESSRRR 10 Unmodified _NKRPESSRRR_ 0 0 0 REV__ENST00000466510.5_1_22:46711975-46722552:+|nuORF REV__ENST00000466510.5_1_22:46711975-46722552:+|nuORF MSMS UPN48_class_I_Rep_3 7 643.3626708984375 2 643.363433 1284.71231 NaN NaN NaN NaN NaN NaN NaN 59.065 1 62.588 62.088 63.088 3.5231 0 0 0 0.53105 1 12858 12858 1.4819 0 1 + 28538 17850 18054 18065 33061 33061 0.08134536760530864 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.29913330078125 3 491.299153 1470.87563 0.2699 0.0001326 0.15413 7.5722E-05 0.42403 0.00020833 491.2991209212414 106 0.89292 109.71 109.39 110.28 3.7088 344 128 4 0 0 0 0.67113 2 26007 26007;26062 1.3296 1.3296 1 2970300 + 28539 30985 18055 18066 33062;33063 33062 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.2997741699219 3 491.299153 1470.87563 0.48781 0.00023966 -0.043919 -2.1577E-05 0.44389 0.00021808 491.299026763051 106.01 0.87233 109.55 109.26 110.13 3.5345 389 130 4 0 0 0 0.68081 1 25637 25637 0.45452 0.45452 1 2944700 + 28540 30985 18055 18066 33064 33064 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 491.2991943359375 3 491.299153 1470.87563 0.26705 0.0001312 0.2198 0.00010799 0.48685 0.00023919 491.29914869847454 106.04 0.81331 109.58 109.32 110.13 3.5367 315 121 4 0 0 0 0.66974 2 26020 25944;26020 1.4551 1.4551 1 2244700 + 28541 30985 18055 18066 33065;33066 33066 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.2990417480469 3 491.299153 1470.87563 0.15633 7.6807E-05 -0.082706 -4.0634E-05 0.073628 3.6173E-05 491.2989447911226 106.41 0.34241 110.04 110 110.34 3.6277 73 48 2 0 0 0 0.68024 1 25653 25653 0.50596 0.09769 1 513330 + 28542 30985 18055 18066 33067 33067 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 491.2985534667969 3 491.299153 1470.87563 0.15633 7.6807E-05 -0.082706 -4.0634E-05 0.073628 3.6173E-05 491.2989447911226 106.41 0.34241 110.04 110 110.34 3.6277 73 48 2 0 0 0 22.551 1 25679 25679 0.45452 0 1 513330 + 28543 30985 18055 18066 33068 33068 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.2991027832031 3 491.299153 1470.87563 0.26585 0.00013061 -0.090145 -4.4288E-05 0.17571 8.6326E-05 491.2988186801804 105.19 0.033379 108.88 108.86 108.9 3.6901 9 4 3 0 0 0 0.68081 1 24887 24887 0.45452 0.046251 1 302010 + 28544 30985 18055 18066 33069 33069 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.29931640625 3 491.299153 1470.87563 0.26598 0.00013067 0.22964 0.00011282 0.49562 0.0002435 491.2990706977427 106.31 0.48614 110 109.94 110.42 3.6834 107 70 3 0 0 0 0.68081 1 25157 25157 0.45452 0.35968 1 391750 + 28545 30985 18055 18066 33070 33070 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.298583984375 3 491.299153 1470.87563 0.24256 0.00011917 0.12621 6.2008E-05 0.36877 0.00018118 491.2990698911255 106.7 0.26133 110.39 110.27 110.53 3.6899 60 38 2 0 0 0 0.68024 2 25179 25171;25179 0.50596 0.41111 1 484360 + 28546 30985 18055 18066 33071;33072 33072 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 491.299153 1470.87563 0.26942 0.00013236 0.32918 0.00016172 0.59859 0.00029409 491.2991660257109 106.61 0.12267 110.32 110.28 110.4 3.7088 -0.062001 0.00041634 NaN 0.50596 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 163140 + 28547 30985 18055 18066 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 491.299153 1470.87563 0.2699 0.0001326 0.15413 7.5722E-05 0.42403 0.00020833 491.2991209212414 106 0.89292 109.71 109.39 110.28 3.7088 -0.12444 -3.2327E-05 NaN 1.4551 344 128 4 NaN NaN NaN NaN 0 NaN NaN 0 2970300 + 28548 30985 18055 18066 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 491.299153 1470.87563 0.488 0.00023975 -0.28342 -0.00013924 0.20458 0.00010051 491.29887733293543 106.75 0.15101 110.28 110.25 110.4 3.5345 -0.094102 -0.00048657 NaN 0.50596 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 197200 + 28549 30985 18055 18066 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 491.299153 1470.87563 0.2656 0.00013049 0.014467 7.1077E-06 0.28007 0.0001376 491.29908283130203 106.81 0.31293 110.48 110.42 110.73 3.6783 0.10654 -4.7509E-05 NaN 0.50596 66 46 2 NaN NaN NaN NaN 0 NaN NaN 0 195750 + 28550 30985 18055 18066 0.15902759602249716 NKRQVKHRHRI 11 Unmodified _NKRQVKHRHRI_ 0 0 0 REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense REV__LTR5B_dup425|chr20:34424999-34425992:+|2.632606807678838|0.0480317609444171|5.78|151.0|40|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 491.299153 1470.87563 0.24256 0.00011917 0.12621 6.2008E-05 0.36877 0.00018118 491.2990698911255 106.7 0.26133 110.39 110.27 110.53 3.6899 0.011319 0.00011719 NaN 0.50596 60 38 2 NaN NaN NaN NaN 0 NaN NaN 0 484360 + 28551 30985 18055 18066 0.15902759602249716 NKRRGKAKSI 10 Unmodified _NKRRGKAKSI_ 0 0 0 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 MULTI-MSMS UPN47_class_I_Rep_3 4 579.3515625 2 579.364913 1156.71527 0.50628 0.00029332 -1.3875 -0.00080385 -0.88119 -0.00051053 579.364992934907 109.31 0.5169 112.85 112.71 113.23 3.5347 132 69 3 0 0 0 0.56033 1 26910 26910 3.5965 3.5965 1 3873100 + 28552 18554 18056 18067 33073 33073 0.14318411885369642 NKRRGKAKSI 10 Unmodified _NKRRGKAKSI_ 0 0 0 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 MULTI-MSMS UPN48_class_I_Rep_3 7 579.3533325195312 2 579.364913 1156.71527 0.48555 0.00028131 -2.178 -0.0012618 -1.6924 -0.00098052 579.3643226227822 109.24 0.40254 112.91 112.8 113.2 3.6751 123 54 3 0 0 0 0.54466 1 25968 25968 6.2058 1.8765 1 3072300 + 28553 18554 18056 18067 33074 33074 0.14318411885369642 NKRTVQWW 8 Unmodified _NKRTVQWW_ 0 0 0 HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|4|1|sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|4|1|sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 559.2980346679688 2 559.298707 1116.58286 NaN NaN NaN NaN NaN NaN NaN 36.161 1 36.161 35.661 36.661 0 0 0 0 0.40746 1 6671 6671 0.69038 0 1 28554 8424 18057 18068 33075 33075 0.029233871485303098 NKRVFLIYA 9 Unmodified _NKRVFLIYA_ 0 0 0 REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3 REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3 MULTI-MSMS UPN46_class_I_Rep_3 1 562.3350219726562 2 562.334759 1122.65496 0.40781 0.00022932 0.25299 0.00014227 0.6608 0.00037159 562.3347934735037 46.7 0.047657 46.7 46.672 46.72 0 9 3 4 0 0 0 0.50015 1 9599 9599 0.6015 0 1 2817900 + 28555 17933 18058 18069 33076 33076 0.09854301502309681 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.5924987792969 3 422.592286 1264.75503 0.03171 1.34E-05 0.41394 0.00017493 0.44565 0.00018833 422.5924157346432 53.671 0.46086 53.671 53.552 54.013 0 96 49 2 0 0 0 0.56454 1 11645 11645 0.62683 0 1 319480 28556 12459 18059 18070 33077 33077 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 422.59222412109375 3 422.592286 1264.75503 -0.020981 -8.8662E-06 0.52176 0.00022049 0.50078 0.00021163 422.5923541523439 65.803 0.4004 69.255 69.053 69.454 3.4516 35 26 3 0 0 0 0.56444 1 15004 15004 0.69767 0 1 165820 28557 12459 18059 18070 33078 33078 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 422.59246826171875 3 422.592286 1264.75503 NaN NaN NaN NaN NaN NaN NaN 68.767 1 72.275 71.775 72.775 3.5083 0 0 0 0.53105 1 15882 15882 0.69767 0.19171 1 28558 12459 18059 18070 33079 33079 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5926513671875 3 422.592286 1264.75503 -0.0076643 -3.2389E-06 0.57037 0.00024103 0.5627 0.00023779 422.59252302229015 55.407 0.52859 58.962 58.694 59.222 3.5554 49 28 2 0 0 0 0.56296 1 11713 11713 1.7423 1.7423 1 323630 28559 12459 18059 18070 33080 33080 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592286 1264.75503 -0.046743 -1.9753E-05 0.52336 0.00022117 0.47662 0.00020141 422.59250548234564 55.299 0.23587 58.777 58.705 58.941 3.4785 -0.18732 -9.4E-05 NaN 1.7423 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 79480 28560 12459 18059 18070 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.592286 1264.75503 -0.45907 -0.000194 0.73736 0.0003116 0.27829 0.0001176 422.5925752044472 55.742 0.74696 59.053 58.824 59.57 3.3102 0.088215 0.0001773 NaN 1.7423 58 44 2 NaN NaN NaN NaN 0 NaN NaN 0 109050 28561 12459 18059 18070 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 -0.047794 -2.0197E-05 0.55825 0.00023591 0.51046 0.00021572 422.59246105546777 55.558 0.65942 59.066 58.856 59.515 3.5082 0.10149 -4.9761E-05 NaN 1.7423 78 43 2 NaN NaN NaN NaN 0 NaN NaN 0 186850 28562 12459 18059 18070 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 422.592286 1264.75503 0.10823 4.5737E-05 0.49271 0.00020821 0.60094 0.00025395 422.5924561894107 65.734 0.24016 69.221 69.132 69.373 3.4866 -0.035038 7.9318E-05 NaN 0.69767 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 103090 28563 12459 18059 18070 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 422.592286 1264.75503 0.14995 6.3368E-05 0.30442 0.00012864 0.45437 0.00019201 422.59245126170896 65.784 0.35578 69.291 69.009 69.364 3.5077 0.035637 -0.00015939 NaN 0.69767 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 120790 28564 12459 18059 18070 0.13324215564421138 NKRVHRMILV 10 Unmodified _NKRVHRMILV_ 0 0 0 L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense L1ME2_dup10541|chr15:59675640-59676120:+|1.7672423148862386|0.1592538155596564|3.47|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 422.592286 1264.75503 -0.0076643 -3.2389E-06 0.57037 0.00024103 0.5627 0.00023779 422.59252302229015 55.407 0.52859 58.962 58.694 59.222 3.5554 -0.0023828 -3.4403E-05 NaN 1.7423 49 28 2 NaN NaN NaN NaN 0 NaN NaN 0 323630 28565 12459 18059 18070 0.13324215564421138 NKRWKRLIY 9 Unmodified _NKRWKRLIY_ 0 0 0 L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|10|2|sense L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|10|2|sense L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 638.8855590820312 2 638.885481 1275.75641 NaN NaN NaN NaN NaN NaN NaN 71.355 1 74.873 74.373 75.373 3.5185 0 0 0 0.4007 1 16564 16564 0.52476 0 1 28566 12435 18060 18071 33081 33081 0.12956172924850762 NKRWNITCT 9 Unmodified _NKRWNITCT_ 0 0 0 REV__ENSG00000180245|ENST00000317735|RRH REV__ENSG00000180245|ENST00000317735|RRH MSMS UPN47_class_I_Rep_1 2 568.2845458984375 2 568.287482 1134.56041 NaN NaN NaN NaN NaN NaN NaN 68.833 1 72.197 71.697 72.697 3.3646 0 0 0 0.38784 1 16643 16643 3.5965 0.31518 1 + 28567 20699 18061 18072 33082 33082 -0.0014858031138373917 NKRYCFYL 8 Unmodified _NKRYCFYL_ 0 0 0 REV__ENST00000428865.2_1_6:74405150-74405246:-|nuORF REV__ENST00000428865.2_1_6:74405150-74405246:-|nuORF MSMS UPN48_class_I_Rep_2 6 553.7781372070312 2 553.776219 1105.53789 NaN NaN NaN NaN NaN NaN NaN 30.458 1 34.093 33.593 34.593 3.6351 0 0 0 0.40738 1 4462 4462 0.79363 0.10326 1 + 28568 22282 18062 18073 33083 33083 -0.010661797089824177 NKSETNTF 8 Unmodified _NKSETNTF_ 0 0 0 REV__Tigger17a_dup2230|chr21:39230393-39231002:-|1.4386676357596886|0.2480014613115559|2.54|151.0|39|2|anti-sense REV__Tigger17a_dup2230|chr21:39230393-39231002:-|1.4386676357596886|0.2480014613115559|2.54|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_3 7 470.7220764160156 2 470.722164 939.429775 NaN NaN NaN NaN NaN NaN NaN 61.963 1 65.473 64.973 65.973 3.5104 0 0 0 0.4044 1 13736 13736 4.756 0.81161 1 + 28569 32603 18063 18074 33084 33084 -0.042362727585668836 NKSGYKQMEE 10 Unmodified _NKSGYKQMEE_ 0 0 0 L1PA4_dup3800|chr5:53660006-53665971:-|3.7822936163565264|0.3061610850720977|3.63|151.0|38|1|sense L1PA4_dup3800|chr5:53660006-53665971:-|3.7822936163565264|0.3061610850720977|3.63|151.0|38|1|sense L1PA4_dup3800|chr5:53660006-53665971:-|3.7822936163565264|0.3061610850720977|3.63|151.0|38|1|sense MSMS UPN48_class_I_Rep_2 6 404.77239990234375 3 405.188772 1212.54449 NaN NaN NaN NaN NaN NaN NaN 74.641 1 78.231 77.731 78.731 3.59 0 0 0 0.53105 1 17575 17575 0.56317 0 1 28570 14346 18064 18075 33085 33085 -0.05328331338910175 NKSLSTYYQ 9 Unmodified _NKSLSTYYQ_ 0 0 0 nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-2|MAP3K7 nc|ENSG00000135341|O43318-2|MAP3K7 MSMS UPN47_class_I_Rep_3 4 552.2744140625 2 552.272021 1102.52949 NaN NaN NaN NaN NaN NaN NaN 71.694 1 74.913 74.413 75.413 3.2188 0 0 0 0.38916 1 17606 17606 3.2813 0.54611 1 28571 2901 18065 18076 33086 33086 -0.017674551446361875 NKSRKGHI 8 Unmodified _NKSRKGHI_ 0 0 0 REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|15|1|sense REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 470.279296875 2 470.277775 938.540997 NaN NaN NaN NaN NaN NaN NaN 55.531 1 59.087 58.587 59.587 3.5559 0 0 0 0.4044 1 11844 11844 4.756 0 1 + 28572 32372 18066 18077 33087 33087 0.06926831460043559 NKSRKLTF 8 Unmodified _NKSRKLTF_ 0 0 0 HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|133|3|sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|133|3|sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|133|3|sense MSMS UPN47_class_I_Rep_3 4 497.284423828125 2 497.295633 992.576714 NaN NaN NaN NaN NaN NaN NaN 62.521 1 65.691 65.191 66.191 3.1698 0 0 0 0.39996 1 14829 14829 7.9102 0 1 28573 8180 18067 18078 33088 33088 0.08012868917035121 NKSTKNMKK 9 Unmodified _NKSTKNMKK_ 0 0 0 REV__L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|15|1|sense REV__L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 539.6484375 2 539.805508 1077.59646 NaN NaN NaN NaN NaN NaN NaN 58.312 1 58.312 57.812 58.812 0 0 0 0 0.39428 1 12827 12827 2.0598 0 1 + 28574 30433 18068 18079 33089 33089 0.06076876865495251 NKSTNSAKRIQ 11 Unmodified _NKSTNSAKRIQ_ 0 0 0 REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF MSMS UPN48_class_I_Rep_2 6 416.2344665527344 3 416.233592 1245.67895 NaN NaN NaN NaN NaN NaN NaN 103.21 1 106.92 106.42 107.42 3.7108 0 0 0 0.38417 1 24434 24434 2.2527 0 1 + 28575 20581 18069 18080 33090 33090 0.06593490197997198 NKSTNSAKRIQ 11 Unmodified _NKSTNSAKRIQ_ 0 0 0 REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF MSMS UPN48_class_I_Rep_2 6 416.2350769042969 3 416.233592 1245.67895 NaN NaN NaN NaN NaN NaN NaN 104.19 1 107.89 107.39 108.39 3.6991 0 0 0 0.38417 1 24651 24651 2.2527 0.32522 1 + 28576 20581 18069 18080 33091 33091 0.06593490197997198 NKSTNSAKRIQ 11 Unmodified _NKSTNSAKRIQ_ 0 0 0 REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF MSMS UPN48_class_I_Rep_3 7 416.2348327636719 3 416.233592 1245.67895 NaN NaN NaN NaN NaN NaN NaN 103.33 1 107.08 106.58 107.58 3.7434 0 0 0 0.38417 1 24407 24407 2.2527 0.32522 1 + 28577 20581 18069 18080 33092 33092 0.06593490197997198 NKSTNSAKRIQ 11 Unmodified _NKSTNSAKRIQ_ 0 0 0 REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF MSMS UPN48_class_I_Rep_3 7 416.23455810546875 3 416.233592 1245.67895 NaN NaN NaN NaN NaN NaN NaN 104.4 1 108.12 107.62 108.62 3.7192 0 0 0 0.38417 1 24647 24647 2.2527 0.32522 1 + 28578 20581 18069 18080 33093 33093 0.06593490197997198 NKSVGIILP 9 Unmodified _NKSVGIILP_ 0 0 0 Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|31|3|sense Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|31|3|sense Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 470.7945556640625 2 470.794935 939.575317 -0.32743 -0.00015415 -0.70999 -0.00033426 -1.0374 -0.00048841 470.79477345052027 37.847 1.2517 41.235 40.748 42 3.3879 234 100 3 0 0 0 0.47197 1 7469 7469 3.5965 1.019 1 469690 28579 33028 18070 18081 33094 33094 0.10311234828293436 NKTAEPLP 8 Unmodified _NKTAEPLP_ 0 0 0 REV__L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|11|1|sense REV__L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 435.2511901855469 2 435.239993 868.465432 NaN NaN NaN NaN NaN NaN NaN 71.28 1 71.28 70.78 71.78 0 0 0 0 0.40625 1 16412 16412 2.3027 0.24298 1 + 28580 30575 18071 18082 33095 33095 0.025938094890989305 NKTKKIVAI 9 Unmodified _NKTKKIVAI_ 0 0 0 REV__L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|36|3|sense REV__L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|36|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 507.83721923828125 2 507.837134 1013.65972 0.19397 9.8503E-05 -0.27384 -0.00013907 -0.079879 -4.0566E-05 507.8369868250648 45.141 0.68471 48.778 48.509 49.194 3.6371 69 44 2 0 0 0 0.39745 1 8597 8597 8.1555 1.0538 1 149510 + 28581 25399 18072 18083 33096 33096 0.153431856450311 NKTKKKKSS 9 Unmodified _NKTKKKKSS_ 0 0 0 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 MULTI-MSMS UPN46_class_I_Rep_3 1 524.826904296875 2 524.827298 1047.64004 0.33127 0.00017386 -0.16794 -8.814E-05 0.16333 8.572E-05 524.8271037598662 93.656 0.31768 93.656 93.438 93.756 0 74 31 3 0 0 0 0.49026 1 22653 22653 1.6526 1.6526 1 4266000 28582 2510 18073 18084 33097 33097 0.11812809634261612 NKTKKKKSS 9 Unmodified _NKTKKKKSS_ 0 0 0 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 524.827298 1047.64004 0.2337 0.00012265 -0.065262 -3.4251E-05 0.16844 8.8403E-05 524.8271567205047 90.249 0.88062 93.706 93.336 94.216 3.4571 0.033971 0.00011968 NaN 1.6526 382 126 4 NaN NaN NaN NaN 0 NaN NaN 0 1982300 28583 2510 18073 18084 0.11812809634261612 NKTKKKKSS 9 Unmodified _NKTKKKKSS_ 0 0 0 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 524.827298 1047.64004 0.39731 0.00020852 -0.20127 -0.00010563 0.19604 0.00010289 524.8270825509148 90.297 0.91779 93.695 93.36 94.278 3.3976 0.023115 -2.3083E-05 NaN 1.6526 340 124 4 NaN NaN NaN NaN 0 NaN NaN 0 2088600 28584 2510 18073 18084 0.11812809634261612 NKTKKKKSS 9 Unmodified _NKTKKKKSS_ 0 0 0 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 524.827298 1047.64004 0.29713 0.00015594 -0.19613 -0.00010293 0.101 5.3009E-05 524.8271100382276 90.002 1.2604 93.628 93.233 94.494 3.6255 -0.044477 -1.7681E-05 NaN 1.6526 510 161 5 NaN NaN NaN NaN 0 NaN NaN 0 5402200 28585 2510 18073 18084 0.11812809634261612 NKTKKKKSS 9 Unmodified _NKTKKKKSS_ 0 0 0 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 ENSG00000125686|ENST00000300651|MED1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 524.827298 1047.64004 0.39253 0.00020601 -0.21718 -0.00011398 0.17536 9.2032E-05 524.8270876315501 89.928 1.3407 93.675 93.237 94.577 3.7471 0.0030211 -3.9774E-05 NaN 1.6526 521 184 5 NaN NaN NaN NaN 0 NaN NaN 0 6015600 28586 2510 18073 18084 0.11812809634261612 NKTKKLRNIP 10 Unmodified _NKTKKLRNIP_ 0 0 0 L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|7|1|sense L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|7|1|sense L1PB1_dup1075|chr2:54024379-54025813:+|2.688602357160701|0.120705123194286|4.48|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 404.5886535644531 3 404.59094 1210.75099 NaN NaN NaN NaN NaN NaN NaN 36.892 1 40.139 39.639 40.639 3.247 0 0 0 0.53105 1 7009 7009 1.7423 0 1 28587 14998 18074 18085 33098 33098 0.15404449342349835 NKTKLLIWVP 10 Unmodified _NKTKLLIWVP_ 0 0 0 REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense MSMS UPN47_class_I_Rep_1 2 404.5887451171875 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 38.37 1 42.035 41.535 42.535 3.6652 0 0 0 0.53105 1 7386 7386 1.5923 0.63001 1 + 28588 25383 18075 18086 33099 33099 0.14683716741933495 NKTKLLIWVP 10 Unmodified _NKTKLLIWVP_ 0 0 0 REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 404.58905029296875 3 404.588536 1210.74378 0.031913 1.2912E-05 0.30235 0.00012233 0.33426 0.00013524 404.92321464381143 39.888 0.20118 43.63 43.489 43.69 3.7413 25 18 2 0 0 0 0.56072 1 7134 7134 3.3196 1.5774 1 56419 + 28589 25383 18075 18086 33100 33100 0.14683716741933495 NKTKLLIWVP 10 Unmodified _NKTKLLIWVP_ 0 0 0 REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense MSMS UPN48_class_I_Rep_2 6 404.6446228027344 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 40.039 1 43.78 43.28 44.28 3.7413 0 0 0 0.53105 1 7170 7170 3.3196 1.5774 1 + 28590 25383 18075 18086 33101 33101 0.14683716741933495 NKTKLLIWVP 10 Unmodified _NKTKLLIWVP_ 0 0 0 REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|22|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 404.588536 1210.74378 0.042174 1.7063E-05 0.93241 0.00037724 0.97458 0.0003943 404.5887723023918 43.604 0.14178 43.604 43.551 43.693 0 -0.011654 0.0002925 NaN 3.3196 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 91258 + 28591 25383 18075 18086 0.14683716741933495 NKTQVKLL 8 Unmodified _NKTQVKLL_ 0 0 0 L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|12|1|sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|12|1|sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2998962402344 2 472.300384 942.586216 -0.57839 -0.00027318 0.2475 0.0001169 -0.33089 -0.00015628 472.30045591452335 33.399 0.59013 36.674 36.399 36.989 3.2748 64 44 2 0 0 0 0.82752 1 5977 5977 3.9444 0.3479 1 73979 28592 12366 18076 18087 33102 33102 0.112626372025602 NKTRAIIQ 8 Unmodified _NKTRAIIQ_ 0 0 0 REV__L1PA4_dup5878|chr8:47416625-47422756:-|1.768390925550548|0.0316828952312387|5.8|151.0|51|1|sense REV__L1PA4_dup5878|chr8:47416625-47422756:-|1.768390925550548|0.0316828952312387|5.8|151.0|51|1|sense MSMS UPN47_class_I_Rep_2 3 472.2879333496094 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.264 1 91.711 91.211 92.211 3.4471 0 0 0 0.40625 1 21951 21951 2.3027 0 1 + 28593 29658 18077 18088 33103 33103 0.08748582399982752 NKTSLAKR 8 Unmodified _NKTSLAKR_ 0 0 0 REV__L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|72|3|sense REV__L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|72|3|sense MSMS UPN48_class_I_Rep_1 5 459.6383056640625 2 459.279983 916.545414 NaN NaN NaN NaN NaN NaN NaN 85.636 1 89.242 88.742 89.742 3.6059 0 0 0 0.40746 1 20488 20488 0.69038 0 1 + 28594 24450 18078 18089 33104 33104 0.08380295882932387 NKTYKTTY 8 Unmodified _NKTYKTTY_ 0 0 0 REV__L1MB8_dup14546|chr17:48868147-48868532:+|1.3037535428783549|0.4677119979967855|1.48|151.0|6|1|sense REV__L1MB8_dup14546|chr17:48868147-48868532:+|1.3037535428783549|0.4677119979967855|1.48|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 509.763427734375 2 509.763832 1017.51311 NaN NaN NaN NaN NaN NaN NaN 42.537 1 46.225 45.725 46.725 3.6875 0 0 0 0.39996 1 8657 8657 7.9102 0 1 + 28595 26373 18079 18090 33105 33105 0.005054636892737108 NKVGPLPYKHI 11 Unmodified _NKVGPLPYKHI_ 0 0 0 L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|27|1|sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|27|1|sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|27|1|sense MSMS UPN46_class_I_Rep_3 1 422.5819091796875 3 422.583674 1264.72919 NaN NaN NaN NaN NaN NaN NaN 93.815 1 93.815 93.315 94.315 0 0 0 0 0.38417 1 22746 22746 0.40827 0 1 28596 10305 18080 18091 33106 33106 0.10741644593804267 NKVKLEMNL 9 Unmodified _NKVKLEMNL_ 0 0 0 REV__nc|ENSG00000223519|B7ZC32|KIF28P REV__nc|ENSG00000223519|B7ZC32|KIF28P MSMS UPN48_class_I_Rep_1 5 544.8089599609375 2 544.810259 1087.60597 NaN NaN NaN NaN NaN NaN NaN 73.438 1 76.919 76.419 77.419 3.4812 0 0 0 0.38784 1 17305 17305 3.5965 0.31518 1 + 28597 32106 18081 18092 33107 33107 0.06566645150996919 NKVNNKLLS 9 Unmodified _NKVNNKLLS_ 0 0 0 REV__L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|3|1|sense REV__L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.8079223632812 2 515.306198 1028.59784 0.25635 0.0001321 0.24389 0.00012568 0.50025 0.00025778 515.3062980484322 87.585 0.63313 91.204 90.858 91.491 3.6187 102 69 2 0 0 0 0.48846 1 20957 20957 1.8442 0 1 110030 + 28598 25773 18082 18093 33108 33108 0.08468834225891442 NKVPLQLG 8 Unmodified _NKVPLQLG_ 0 0 0 L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|12|2|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|12|2|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 434.7798767089844 2 434.766178 867.517802 NaN NaN NaN NaN NaN NaN NaN 40.235 1 43.902 43.402 44.402 3.6668 0 0 0 0.4044 1 7956 7956 4.756 0 1 28599 11532 18083 18094 33109 33109 0.07874392622727555 NKVPVVDV 8 Unmodified _NKVPVVDV_ 0 0 0 REV__KCNH2|p.A142Gfs*3|1|0.45|ENSG00000055118|chr7:150959621-150959622|-/G|frameshift_variant REV__KCNH2|p.A142Gfs*3|1|0.45|ENSG00000055118|chr7:150959621-150959622|-/G|frameshift_variant MSMS UPN46_class_I_Rep_3 1 435.25848388671875 2 435.258185 868.501818 NaN NaN NaN NaN NaN NaN NaN 80.075 1 80.075 79.575 80.575 0 0 0 0 0.40625 1 18844 18844 2.3027 0 1 + 28600 17695 18084 18095 33110 33110 0.06230686385811168 NKVTELRK 8 Unmodified _NKVTELRK_ 0 0 0 ENST00000398117.1_1_18:60792389-60792626:-|nuORF ENST00000398117.1_1_18:60792389-60792626:-|nuORF ENST00000398117.1_1_18:60792389-60792626:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 494.3012390136719 2 494.300916 986.587279 0.175 8.6501E-05 0.13829 6.8359E-05 0.31329 0.00015486 494.3009356701528 89.03 0.37661 92.653 92.638 93.014 3.6229 50 41 2 0 0 0 0.82752 1 21385 21385 0.69038 0 1 148450 28601 6582 18085 18096 33111 33111 0.09344851571484014 NKWIKSKLK 9 Unmodified _NKWIKSKLK_ 0 0 0 REV__L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|44|3|sense REV__L1ME1_dup23986|chr13:72939767-72941221:-|2.932990106367732|0.0507873786502627|5.85|151.0|44|3|sense MSMS UPN46_class_I_Rep_3 1 572.8634643554688 2 572.863683 1143.71281 NaN NaN NaN NaN NaN NaN NaN 13.057 1 13.057 12.557 13.557 0 0 0 0 0.40098 1 286 286 0.45834 0 1 + 28602 27695 18086 18097 33112 33112 0.14670563427694105 NKWLRIQY 8 Unmodified _NKWLRIQY_ 0 0 0 ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|41|2|sense ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|41|2|sense ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|41|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 561.3124389648438 2 560.816733 1119.61891 0.37054 0.0002078 -3.2668 -0.0018321 -2.8963 -0.0016243 560.8154497131559 65.563 0.14268 68.819 68.715 68.858 3.2556 17 9 3 0 0 0 0.82752 1 15676 15676 2.3027 0 1 78847 28603 7769 18087 18098 33113 33113 0.06388844325419996 NKWLRIQY 8 Unmodified _NKWLRIQY_ 0 0 0 ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|41|2|sense ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|41|2|sense ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|41|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.8161010742188 2 560.816733 1119.61891 0.43338 0.00024305 -1.6848 -0.00094487 -1.2514 -0.00070182 560.8154566310901 65.423 0.20996 68.603 68.423 68.633 3.1795 38 16 3 0 0 0 0.82752 1 15692 15692 8.5933 2.3875 1 122290 28604 7769 18087 18098 33114 33114 0.06388844325419996 NKWSGRRKL 9 Unmodified _NKWSGRRKL_ 0 0 0 HAL1_dup1749|chr1:234473009-234473958:+|4.083802153456575|0.2986259234769191|3.77|151.0|30|3|sense HAL1_dup1749|chr1:234473009-234473958:+|4.083802153456575|0.2986259234769191|3.77|151.0|30|3|sense HAL1_dup1749|chr1:234473009-234473958:+|4.083802153456575|0.2986259234769191|3.77|151.0|30|3|sense MSMS UPN48_class_I_Rep_1 5 572.8380737304688 2 572.838531 1143.66251 NaN NaN NaN NaN NaN NaN NaN 97.466 1 101.07 100.57 101.57 3.6088 0 0 0 0.39598 1 23512 23512 1.6526 0.17072 1 28605 7833 18088 18099 33115 33115 0.09642453822561947 NKWVICPPY 9 Unmodified _NKWVICPPY_ 0 0 0 HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|284|2|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|284|2|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|284|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.2854614257812 2 560.28642 1118.55829 NaN NaN NaN NaN NaN NaN NaN 44.001 1 47.514 47.014 48.014 3.5132 0 0 0 0.38639 1 8324 8324 3.9444 0.3479 1 28606 8051 18089 18100 33116 33116 0.0037499095080875122 NKWVYGCW 8 Unmodified _NKWVYGCW_ 0 0 0 REV__L1MC4_dup121|chr1:10561017-10561936:-|1.6984227382380643|0.0257820782554742|6.04|151.0|9|1|sense REV__L1MC4_dup121|chr1:10561017-10561936:-|1.6984227382380643|0.0257820782554742|6.04|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 528.2418823242188 2 528.242012 1054.46947 NaN NaN NaN NaN NaN NaN NaN 25.892 1 29.387 28.887 29.887 3.4945 0 0 0 0.40738 1 3665 3665 0.79363 0 1 + 28607 26807 18090 18101 33117 33117 -0.05558424288824426 NKYKLPIL 8 Unmodified _NKYKLPIL_ 0 0 0 REV__L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|182|1|anti-sense REV__L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|182|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 494.8130798339844 2 494.813128 987.611703 0.22505 0.00011136 -0.041304 -2.0438E-05 0.18375 9.092E-05 494.81302654448825 68.274 0.95043 71.726 71.314 72.265 3.4517 202 79 3 0 0 0 0.82752 6 15909 15646;15691;15767;15805;15844;15909 13.508 0 1 563330 + 28608 26136 18091 18102 33118;33119;33120;33121;33122;33123 33123 0.11740111724986946 NKYKLPIL 8 Unmodified _NKYKLPIL_ 0 0 0 REV__L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|182|1|anti-sense REV__L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|182|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.81292724609375 2 494.813128 987.611703 0.3066 0.00015171 -0.014547 -7.198E-06 0.29205 0.00014451 494.8130138500719 67.928 0.87394 71.436 71.051 71.925 3.5077 167 80 3 0 0 0 0.82752 5 15449 15449;15493;15530;15639;15681 13.508 0 1 493450 + 28609 26136 18091 18102 33124;33125;33126;33127;33128 33124 0.11740111724986946 NKYKNVLNI 9 Unmodified _NKYKNVLNI_ 0 0 0 L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|108|3|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|108|3|sense L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|108|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 553.824462890625 2 553.321848 1104.62914 0.52399 0.00028994 -0.32355 -0.00017903 0.20044 0.00011091 553.3216728836891 65.146 0.22211 68.625 68.544 68.766 3.4792 18 15 2 0 0 0 0.12321 1 14825 14825 3.9444 0 1 105910 28610 9454 18092 18103 33129 33129 0.08101407259982807 NKYLTYLF 8 Unmodified _NKYLTYLF_ 0 0 0 REV__L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|126|2|sense REV__L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|126|2|sense MSMS UPN48_class_I_Rep_2 6 530.9237670898438 2 531.286943 1060.55933 NaN NaN NaN NaN NaN NaN NaN 41.195 1 44.946 44.446 45.446 3.7508 0 0 0 0.40746 1 7501 7501 0.69038 0 1 + 28611 29790 18093 18104 33130 33130 0.03147528591352966 NKYQRSLAF 9 Unmodified _NKYQRSLAF_ 0 0 0 LTR13_dup460|chr21:46225021-46226027:+|1.002708315159245|0.4612916731379345|1.12|151.0|33|3|sense LTR13_dup460|chr21:46225021-46226027:+|1.002708315159245|0.4612916731379345|1.12|151.0|33|3|sense LTR13_dup460|chr21:46225021-46226027:+|1.002708315159245|0.4612916731379345|1.12|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 563.8043823242188 2 563.803823 1125.59309 0.46922 0.00026455 -0.15124 -8.5271E-05 0.31798 0.00017928 563.803672608023 35.489 0.62341 39.177 38.857 39.48 3.6877 85 59 2 0 0 0 0.48643 1 5845 5845 2.0598 0 1 108140 28612 15567 18094 18105 33131 33131 0.035319500831292316 NLAEDIMRL 9 Oxidation (M) _NLAEDIM(Oxidation (M))RL_ NLAEDIM(1)RL NLAEDIM(44)RL 0 0 1 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_1 2 545.7822265625 2 545.781699 1089.54884 0.42353 0.00023116 0.26969 0.00014719 0.69322 0.00037835 545.7818624005496 57.467 0.48343 60.904 60.625 61.109 3.437 73 44 2 0 0 0 0.061655 1 13224 13224 43.982 10.537 1 174730 28613 824 18095 18106 33132 33132 12 0.007651778746321725 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MSMS UPN47_class_I_Rep_1 2 478.7922058105469 2 478.792392 955.570232 0.13846 6.6295E-05 -0.077241 -3.6983E-05 0.061222 2.9313E-05 478.79218598845404 58.746 0.97365 62.163 61.594 62.567 3.4171 113 65 3 0 0 0 0.20317 1 13475 13475 20.415 0 1 163810 28614 4473 18096 18107 33133 33133 0.09066930965661868 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MSMS UPN47_class_I_Rep_3 4 478.7921142578125 2 478.792392 955.570232 -0.025532 -1.2224E-05 0.19315 9.2477E-05 0.16761 8.0253E-05 478.79234423245015 59.062 0.69989 62.228 61.728 62.428 3.1658 63 41 3 0 0 0 0.20317 1 13708 13708 20.415 0 1 140660 28615 4473 18096 18107 33134 33134 0.09066930965661868 NLAENISRV 9 Unmodified _NLAENISRV_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN46_class_I_Rep_3 1 508.2808532714844 2 508.28018 1014.54581 0.28111 0.00014288 -0.37529 -0.00019075 -0.09419 -4.7875E-05 508.28006495229124 46.412 0.74544 46.412 46.126 46.872 0 150 77 3 0 0 0 0.056914 1 9464 9464 46.022 26.765 1 817500 28616 1510;1545 18097 18108 33135 33135 0.03911670812135526 NLAENISRV 9 Unmodified _NLAENISRV_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN47_class_I_Rep_1 2 508.2801513671875 2 508.28018 1014.54581 -0.16646 -8.4606E-05 -0.21202 -0.00010777 -0.37848 -0.00019237 508.2801372667257 41.236 0.75735 44.908 44.545 45.303 3.6719 124 59 3 0 0 0 0.01765 3 8247 8202;8247;8288 64.927 28.8 1 287470 28617 1510;1545 18097 18108 33136;33137;33138 33137 0.03911670812135526 NLAENISRV 9 Unmodified _NLAENISRV_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN47_class_I_Rep_2 3 508.2799987792969 2 508.28018 1014.54581 -0.24216 -0.00012308 -0.0075341 -3.8294E-06 -0.24969 -0.00012691 508.2802232375728 41.522 0.79958 44.887 44.614 45.414 3.3655 129 60 3 0 0 0 0.023676 5 8397 8317;8360;8397;8435;8475 61.09 31.57 1 344750 28618 1510;1545 18097 18108 33139;33140;33141;33142;33143 33141 0.03911670812135526 NLAENISRV 9 Unmodified _NLAENISRV_ 0 0 0 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN47_class_I_Rep_3 4 508.280029296875 2 508.28018 1014.54581 -0.1372 -6.9736E-05 -0.18662 -9.4855E-05 -0.32382 -0.00016459 508.2801172694895 41.733 0.80349 44.97 44.645 45.449 3.2372 142 69 3 0 0 0 0.038834 4 8499 8422;8459;8499;8536 53.47 30.485 1 249210 28619 1510;1545 18097 18108 33144;33145;33146;33147 33146 0.03911670812135526 NLAIGVLTGV 10 Unmodified _NLAIGVLTGV_ 0 0 0 REV__L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|76|2|anti-sense REV__L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|76|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 478.7926330566406 2 478.792392 955.570232 0.23464 0.00011234 -0.35072 -0.00016792 -0.11608 -5.5577E-05 478.792161509208 58.927 0.56161 62.209 61.815 62.377 3.2818 58 33 2 0 0 0 0.43106 2 13623 13573;13623 17.113 0 1 119630 + 28620 29152 18098 18109 33148;33149 33149 0.09066930965661868 NLALTLAQL 9 Unmodified _NLALTLAQL_ 0 0 0 REV__ENST00000527773.1_1_11:27405881-27407050:-|nuORF REV__ENST00000527773.1_1_11:27405881-27407050:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.7926940917969 2 478.792392 955.570232 0.13846 6.6295E-05 -0.077241 -3.6983E-05 0.061222 2.9313E-05 478.79218598845404 58.746 0.97365 62.163 61.594 62.567 3.4171 113 65 3 0 0 0 0.38714 1 13441 13441 8.7454 0 1 163810 + 28621 21217 18099 18110 33150 33150 0.0906693096563913 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS UPN47_class_I_Rep_1 2 510.771728515625 2 510.771657 1019.52876 0.26179 0.00013371 0.0090103 4.6022E-06 0.2708 0.00013832 510.7715627467066 78.205 0.32552 81.634 81.569 81.895 3.4289 50 34 2 0 0 0 0.0069097 1 19432 19432 85.764 24.163 1 207260 28622 4226 18100 18111 33151 33151 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_1 2 510.771484375 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 78.042 1 81.471 80.971 81.971 3.4289 0 0 0 1.9244E-06 1 19389 19389 68.76 15.356 1 28623 4226 18100 18111 33152 33152 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_1 2 510.7715759277344 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 78.328 1 81.757 81.257 82.257 3.4289 0 0 0 1.191E-06 1 19470 19470 70.929 0.59667 1 28624 4226 18100 18111 33153 33153 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7717590332031 2 510.771657 1019.52876 0.16687 8.5233E-05 -0.14098 -7.2008E-05 0.025891 1.3225E-05 510.77153325544026 77.767 0.76114 81.11 80.776 81.537 3.3428 193 79 3 0 0 0 0.11648 1 19410 19410 30.703 6.9137 1 578620 28625 4226 18100 18111 33154 33154 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_2 3 510.7716064453125 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 78.285 1 81.627 81.127 82.127 3.3428 0 0 0 1.1677E-08 1 19444 19444 77.049 23.645 1 28626 4226 18100 18111 33155 33155 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_2 3 510.7718811035156 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 78.533 1 81.876 81.376 82.376 3.3428 0 0 0 0.059285 1 19510 19510 34.222 4.3811 1 28627 4226 18100 18111 33156 33156 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS UPN47_class_I_Rep_3 4 510.7718200683594 2 510.771657 1019.52876 0.28897 0.0001476 0.079767 4.0743E-05 0.36873 0.00018834 510.77160212420273 78.447 0.87431 81.729 81.421 82.295 3.2816 180 91 3 0 0 0 0.0054476 4 19613 19505;19542;19579;19613 124.95 45.357 1 383980 28628 4226 18100 18111 33157;33158;33159;33160 33160 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_3 4 510.77154541015625 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 78.759 1 82.054 81.554 82.554 3.295 0 0 0 1.7288E-06 1 19654 19654 69.338 17.708 1 28629 4226 18100 18111 33161 33161 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_3 4 510.7713928222656 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 78.881 1 82.176 81.676 82.676 3.295 0 0 0 0.039693 1 19688 19688 40.725 9.4566 1 28630 4226 18100 18111 33162 33162 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_3 4 510.7723693847656 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 79.045 1 82.34 81.84 82.84 3.295 0 0 0 0.13348 1 19735 19735 20.581 0.1664 1 28631 4226 18100 18111 33163 33163 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MSMS UPN47_class_I_Rep_3 4 510.77142333984375 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 79.077 1 82.372 81.872 82.872 3.295 0 0 0 0.31132 1 19745 19745 10.151 1.4052 1 28632 4226 18100 18111 33164 33164 0.019777502063448082 NLDASIVETK 10 Unmodified _NLDASIVETK_ 0 0 0 REV__L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|6|1|sense REV__L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 545.293701171875 2 545.292953 1088.57135 NaN NaN NaN NaN NaN NaN NaN 26.355 1 29.703 29.203 30.203 3.3478 0 0 0 0.53105 1 3842 3842 2.9952 0 1 + 28633 29526 18101 18112 33165 33165 0.030611005438913708 NLDIERPTY 9 Unmodified _NLDIERPTY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_1 2 560.7855224609375 2 560.785296 1119.55604 0.12812 7.1848E-05 0.51019 0.0002861 0.63831 0.00035795 561.2874142202722 45.805 0.43026 49.505 49.345 49.775 3.6999 40 26 2 0 0 0 0.22932 1 9721 9721 18.373 6.1324 1 102240 28634 2425;4314 18102 18113 33166 33166 0.0010423374671972852 NLDIERPTY 9 Unmodified _NLDIERPTY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_3 4 560.786376953125 2 560.785296 1119.55604 0.28809 0.00016156 -0.16235 -9.1042E-05 0.12575 7.0516E-05 561.2868032579967 46.291 0.60491 49.535 49.262 49.867 3.2439 60 38 2 0 0 0 0.45441 1 9954 9954 4.897 1.9018 1 97509 28635 2425;4314 18102 18113 33167 33167 0.0010423374671972852 NLDIERPTY 9 Unmodified _NLDIERPTY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MATCH UPN47_class_I_Rep_2 3 2 560.785296 1119.55604 0.26168 0.00014674 -1.907 -0.0010694 -1.6453 -0.00092265 560.7852185047769 46.201 0.51493 49.554 49.28 49.794 3.3534 0.022587 -0.0022045 NaN 18.373 56 34 3 NaN NaN NaN NaN 0 NaN NaN 0 91572 28636 2425;4314 18102 18113 0.0010423374671972852 NLDKNLIKY 9 Unmodified _NLDKNLIKY_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-MSMS UPN47_class_I_Rep_2 3 560.8209838867188 2 560.821681 1119.62881 0.045172 2.5333E-05 0.13129 7.3631E-05 0.17646 9.8964E-05 560.8216274155925 40.01 0.59559 43.381 43.082 43.677 3.3712 50 39 2 0 0 0 0.37599 1 7867 7867 9.3831 1.2276 1 71374 28637 1214 18103 18114 33168 33168 0.07377987540144204 NLDKNTVGY 9 Unmodified _NLDKNTVGY_ 0 0 0 nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 MULTI-MSMS UPN47_class_I_Rep_1 2 512.2571411132812 2 512.258914 1022.50327 -0.19867 -0.00010177 0.3367 0.00017248 0.13803 7.0707E-05 512.2590401195113 30.297 0.52283 34.042 33.795 34.318 3.7449 67 38 2 0 0 0 0.15547 1 4938 4938 24.991 6.8446 1 80124 28638 736 18104 18115 33169 33169 -0.007077243161006663 NLDKNTVGY 9 Unmodified _NLDKNTVGY_ 0 0 0 nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 MULTI-MSMS UPN47_class_I_Rep_2 3 512.2570190429688 2 512.258914 1022.50327 -0.27897 -0.00014291 0.25408 0.00013015 -0.024893 -1.2751E-05 512.2590002772331 30.504 0.5021 33.987 33.716 34.218 3.4821 66 39 2 0 0 0 0.19147 2 5014 5014;5063 21.537 3.3906 1 88507 28639 736 18104 18115 33170;33171 33170 -0.007077243161006663 NLDKNTVGY 9 Unmodified _NLDKNTVGY_ 0 0 0 nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 MULTI-MSMS UPN47_class_I_Rep_3 4 512.2592163085938 2 512.258914 1022.50327 -0.34846 -0.0001785 0.32992 0.000169 -0.018546 -9.5006E-06 512.2592911517169 30.624 0.58996 33.935 33.734 34.324 3.3116 62 47 2 0 0 0 0.19147 2 5127 5127;5167 21.537 3.3906 1 95387 28640 736 18104 18115 33172;33173 33172 -0.007077243161006663 NLDLAPALMP 10 Unmodified _NLDLAPALMP_ 0 0 0 REV__ENSG00000117480|ENST00000243167|FAAH REV__ENSG00000117480|ENST00000243167|FAAH MSMS UPN47_class_I_Rep_2 3 527.78515625 2 527.78371 1053.55287 NaN NaN NaN NaN NaN NaN NaN 24.956 1 28.439 27.939 28.939 3.483 0 0 0 0.53105 1 3393 3393 3.2813 0.97858 1 + 28641 18636 18105 18116 33174 33174 0.028232673683760368 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS UPN47_class_I_Rep_1 2 533.2591552734375 2 533.258579 1064.50261 0.37305 0.00019893 0.059602 3.1783E-05 0.43265 0.00023071 533.2584511043044 62.063 0.63071 65.431 65.067 65.697 3.3681 98 46 3 0 0 0 0.0058741 2 14573 14573;14616 76.825 49.941 1 186040 28642 4627 18106 18117 33175;33176 33175 -0.02706563755782554 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS UPN47_class_I_Rep_2 3 533.2582397460938 2 533.258579 1064.50261 0.32275 0.00017211 0.072629 3.873E-05 0.39538 0.00021084 533.2584182601021 62.242 0.70326 65.502 65.169 65.872 3.2594 89 47 3 0 0 0 0.0078401 2 14668 14668;14712 96.367 62.264 1 159710 28643 4627 18106 18117 33177;33178 33177 -0.02706563755782554 NLDPLTETY 9 Unmodified _NLDPLTETY_ 0 0 0 nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20 nc|ENSG00000173418|P61599-2|NAA20 nc|ENSG00000173418|P61599-2|NAA20 MULTI-MSMS UPN47_class_I_Rep_3 4 533.2586059570312 2 533.258579 1064.50261 0.36044 0.00019221 -0.19831 -0.00010575 0.16213 8.6458E-05 533.2584092604297 62.285 0.84584 65.451 64.948 65.794 3.1667 88 57 2 0 0 0 0.0094161 2 14738 14738;14807 70.332 52.186 1 200180 28644 4627 18106 18117 33179;33180 33179 -0.02706563755782554 NLDSQRLQY 9 Unmodified _NLDSQRLQY_ 0 0 0 nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD MULTI-MSMS UPN47_class_I_Rep_1 2 568.78955078125 2 568.78837 1135.56219 -0.046953 -2.6706E-05 0.13363 7.6005E-05 0.086673 4.9299E-05 568.7883923465863 37.668 0.48515 41.333 41.152 41.637 3.6652 61 34 2 0 0 0 0.17897 3 7187 7149;7187;7201 22.736 3.4793 1 102970 28645 3576 18107 18118 33181;33182;33183 33182 -0.00017248021754312504 NLDSQRLQY 9 Unmodified _NLDSQRLQY_ 0 0 0 nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD MULTI-MSMS UPN47_class_I_Rep_2 3 568.7877807617188 2 568.78837 1135.56219 0.045387 2.5816E-05 -0.067935 -3.8641E-05 -0.022548 -1.2825E-05 568.7881831745 37.99 0.44331 41.378 41.203 41.647 3.3879 62 34 2 0 0 0 0.073198 1 7296 7296 40.239 17.503 1 94322 28646 3576 18107 18118 33184 33184 -0.00017248021754312504 NLDSQRLQY 9 Unmodified _NLDSQRLQY_ 0 0 0 nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD MULTI-MSMS UPN47_class_I_Rep_3 4 568.7882080078125 2 568.78837 1135.56219 -0.062433 -3.5511E-05 -0.12178 -6.9269E-05 -0.18422 -0.00010478 568.7884178738619 38.128 0.5401 41.369 41.117 41.657 3.2414 56 38 2 0 0 0 0.19147 3 7366 7366;7406;7466 21.537 3.3906 1 101470 28647 3576 18107 18118 33185;33186;33187 33185 -0.00017248021754312504 NLDTTIAITQ 10 Unmodified _NLDTTIAITQ_ 0 0 0 ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|5|intron;ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|1|intron;ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|3|intron;ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|4|intron;ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|6|intron;nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|5|intron ENSG00000070495.15,JMJD6,chr17,-,I2.1,76724059,76725466|24|8.85|5|intron MSMS UPN48_class_I_Rep_2 6 545.292724609375 2 545.292953 1088.57135 NaN NaN NaN NaN NaN NaN NaN 26.599 1 30.232 29.732 30.732 3.6332 0 0 0 0.53105 1 3409 3409 1.1933 0 1 28648 1074 18108 18119 33188 33188 0.030611005438913708 NLELRFQY 8 Unmodified _NLELRFQY_ 0 0 0 nc|ENSG00000174226|Q8N9S9-2|SNX31;ENSG00000174226|ENST00000311812|SNX31 nc|ENSG00000174226|Q8N9S9-2|SNX31 nc|ENSG00000174226|Q8N9S9-2|SNX31 MSMS UPN46_class_I_Rep_3 1 541.7977294921875 2 541.785099 1081.55564 NaN NaN NaN NaN NaN NaN NaN 54.467 1 54.467 53.967 54.967 0 0 0 0 0.38547 1 11795 11795 13.508 0.46542 1 28649 4670 18109 18120 33189 33189 0.01812858817538654 NLESTQRKM 9 Unmodified _NLESTQRKM_ 0 0 0 L1M4a1_dup1953|chr13:21030622-21031569:-|1.3781651935512176|0.0132688005899582|6.7|151.0|19|2|sense L1M4a1_dup1953|chr13:21030622-21031569:-|1.3781651935512176|0.0132688005899582|6.7|151.0|19|2|sense L1M4a1_dup1953|chr13:21030622-21031569:-|1.3781651935512176|0.0132688005899582|6.7|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 553.3622436523438 2 553.784773 1105.55499 NaN NaN NaN NaN NaN NaN NaN 55.847 1 59.349 58.849 59.849 3.5014 0 0 0 0.39598 1 11960 11960 1.6526 0 1 28650 8945 18110 18121 33190 33190 0.006436961061581314 NLETVLDLLF 10 Unmodified _NLETVLDLLF_ 0 0 0 L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 589.3314819335938 2 588.829172 1175.64379 0.48555 0.00028591 -0.17412 -0.00010252 0.31144 0.00018338 588.8288720434169 68.871 0.30934 72.379 72.229 72.538 3.5083 33 19 2 0 0 0 0.31818 1 15912 15912 27.629 0 1 122120 28651 11553 18111 18122 33191 33191 0.06299434617471888 NLETVLDLLF 10 Unmodified _NLETVLDLLF_ 0 0 0 L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.8292846679688 2 588.829172 1175.64379 0.57 0.00033564 -0.50944 -0.00029998 0.060561 3.566E-05 588.8286860165592 68.781 0.44243 72.29 72.125 72.567 3.5094 52 31 2 0 0 0 0.3776 1 15794 15794 21.537 0 1 160880 28652 11553 18111 18122 33192 33192 0.06299434617471888 NLETVLDLLF 10 Unmodified _NLETVLDLLF_ 0 0 0 L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|10|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 588.829172 1175.64379 0.48555 0.00028591 -0.17412 -0.00010252 0.31144 0.00018338 588.8288720434169 68.871 0.30934 72.379 72.229 72.538 3.5083 -0.024939 0.0001588 NaN 27.629 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 122120 28653 11553 18111 18122 0.06299434617471888 NLFAQTYGL 9 Unmodified _NLFAQTYGL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS UPN47_class_I_Rep_1 2 513.76611328125 2 513.766374 1025.5182 0.24474 0.00012574 -0.059119 -3.0373E-05 0.18562 9.5367E-05 513.7661911583474 72.657 0.4884 76.036 75.789 76.277 3.3799 67 39 2 0 0 0 0.24936 1 17761 17761 17.113 7.7655 1 168710 28654 2690 18112 18123 33193 33193 0.0064576755189591495 NLFAQTYGL 9 Unmodified _NLFAQTYGL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS UPN47_class_I_Rep_2 3 513.766357421875 2 513.766374 1025.5182 0.096586 4.9623E-05 -0.10558 -5.4244E-05 -0.0089956 -4.6216E-06 513.7662935470591 72.901 0.51656 76.198 75.915 76.432 3.2971 78 44 2 0 0 0 0.31407 1 17838 17838 13.042 5.7532 1 179870 28655 2690 18112 18123 33194 33194 0.0064576755189591495 NLFAQTYGL 9 Unmodified _NLFAQTYGL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS UPN47_class_I_Rep_3 4 513.7665405273438 2 513.766374 1025.5182 0.28492 0.00014638 -0.35603 -0.00018292 -0.071113 -3.6535E-05 513.7660084960655 73.014 0.50842 76.241 75.904 76.413 3.2271 99 46 3 0 0 0 0.0094161 2 17987 17922;17987 70.332 41.845 1 174300 28656 2690 18112 18123 33195;33196 33196 0.0064576755189591495 NLFDLSNRY 9 Unmodified _NLFDLSNRY_ 0 0 0 REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|261|2|anti-sense REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|261|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.285888671875 2 571.285463 1140.55637 0.34602 0.00019768 -0.13506 -7.7159E-05 0.21096 0.00012052 571.285459526225 35.791 0.46141 35.791 35.636 36.098 0 53 32 2 0 0 0 0.38714 1 6614 6614 8.7454 0.15213 1 141110 + 28657 28936 18113 18124 33197 33197 -0.008283465334216089 NLFDRVVTL 9 Unmodified _NLFDRVVTL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 538.8089599609375 2 538.808574 1075.60259 0.37031 0.00019953 0.076897 4.1433E-05 0.44721 0.00024096 538.8085797531195 70.476 0.47101 73.848 73.587 74.058 3.3713 81 45 2 0 0 0 0.079935 2 17114 17114;17176 38.615 14.594 1 136280 28658 4074 18114 18125 33198;33199 33198 0.06781718368665679 NLFDRVVTL 9 Unmodified _NLFDRVVTL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 538.80859375 2 538.808574 1075.60259 0.36451 0.0001964 -0.044186 -2.3808E-05 0.32032 0.00017259 538.8085064603587 70.769 0.52766 74.052 73.816 74.344 3.2828 68 49 2 0 0 0 0.12795 1 17241 17241 28.495 10.348 1 108540 28659 4074 18114 18125 33200 33200 0.06781718368665679 NLFDRVVTL 9 Unmodified _NLFDRVVTL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 539.3079223632812 2 538.808574 1075.60259 0.42655 0.00022983 -0.020057 -1.0807E-05 0.40649 0.00021902 538.8084785387185 70.807 0.47577 74.018 73.729 74.205 3.2113 55 39 2 0 0 0 0.22932 3 17305 17305;17339;17379 18.373 5.3306 1 80857 28660 4074 18114 18125 33201;33202;33203 33201 0.06781718368665679 NLFEMAINL 9 Oxidation (M) _NLFEM(Oxidation (M))AINL_ NLFEM(1)AINL NLFEM(46)AINL 0 0 1 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS UPN47_class_I_Rep_1 2 540.7737426757812 2 540.773342 1079.53213 0.44964 0.00024315 0.00010747 5.812E-08 0.44974 0.00024321 540.7733055904731 81.795 0.70894 85.307 84.935 85.644 3.5122 114 80 2 0 0 0 0.05757 2 20448 20405;20448 45.74 15.248 1 482580 28661 3881 18115 18126 33204;33205 33205 123 -0.004453230113085738 NLFEMAINL 9 Oxidation (M) _NLFEM(Oxidation (M))AINL_ NLFEM(1)AINL NLFEM(55)AINL 0 0 1 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS UPN47_class_I_Rep_3 4 540.773681640625 2 540.773342 1079.53213 0.4542 0.00024562 0.30009 0.00016228 0.75429 0.0004079 540.7732585109294 80.945 0.8344 84.268 84.056 84.891 3.3231 196 97 3 0 0 0 0.034404 1 20270 20270 55.235 22.449 1 327020 28662 3881 18115 18126 33206 33206 123 -0.004453230113085738 NLFEMAINL 9 Oxidation (M) _NLFEM(Oxidation (M))AINL_ NLFEM(1)AINL NLFEM(85)AINL 0 0 1 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS UPN47_class_I_Rep_3 4 540.7736206054688 2 540.773342 1079.53213 0.45638 0.0002468 -0.014802 -8.0046E-06 0.44157 0.00023879 540.7732586870993 81.881 0.85998 85.204 84.891 85.751 3.3231 204 98 3 0 0 0 0.006587 1 20499 20499 84.522 38.823 1 358770 28663 3881 18115 18126 33207 33207 123 -0.004453230113085738 NLFEMAINL 9 Oxidation (M) _NLFEM(Oxidation (M))AINL_ 0 0 1 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MATCH UPN47_class_I_Rep_2 3 2 540.773342 1079.53213 0.46634 0.00025218 -0.012714 -6.8753E-06 0.45362 0.00024531 540.7732132330779 81.004 0.62964 84.388 84.044 84.673 3.3839 0.079871 -0.00018779 NaN 55.235 126 77 2 NaN NaN NaN NaN 0 NaN NaN 0 439770 28664 3881 18115 18126 123 -0.004453230113085738 NLFFILLFSFW 11 Unmodified _NLFFILLFSFW_ 0 0 0 L1MEd_dup8354|chr6:90524470-90525347:+|1.1600632510260431|0.2070326983767083|2.49|151.0|54|2|anti-sense L1MEd_dup8354|chr6:90524470-90525347:+|1.1600632510260431|0.2070326983767083|2.49|151.0|54|2|anti-sense L1MEd_dup8354|chr6:90524470-90525347:+|1.1600632510260431|0.2070326983767083|2.49|151.0|54|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 483.236572265625 3 482.932191 1445.77475 -0.29841 -0.00014411 2.2577 0.0010903 1.9593 0.00094619 482.93342060172426 34.534 0.20259 38.22 38.026 38.229 3.6859 16 14 2 0 0 0 22.551 1 6171 6171 1.3296 0.82369 1 37991 28665 13219 18116 18127 33208 33208 0.06968870056175547 NLFFLLALFQ 10 Unmodified _NLFFLLALFQ_ 0 0 0 REV__L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|62|3|anti-sense REV__L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|62|3|anti-sense MSMS UPN48_class_I_Rep_3 7 613.35107421875 2 613.352617 1224.69068 NaN NaN NaN NaN NaN NaN NaN 69.575 1 73.088 72.588 73.588 3.5128 0 0 0 0.53105 1 16038 16038 1.4819 0 1 + 28666 27639 18117 18128 33209 33209 0.08732338959271146 NLFGAEYQL 9 Unmodified _NLFGAEYQL_ 0 0 0 ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE MSMS UPN47_class_I_Rep_1 2 527.7638549804688 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 73.38 1 76.766 76.266 77.266 3.3861 0 0 0 0.18341 1 18014 18014 17.443 1.2935 1 28667 1240 18118 18129 33210 33210 -0.011505363107289668 NLFGAEYQL 9 Unmodified _NLFGAEYQL_ 0 0 0 ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE MSMS UPN47_class_I_Rep_1 2 527.763671875 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 73.537 1 76.923 76.423 77.423 3.3861 0 0 0 0.24627 1 18059 18059 13.615 1.3742 1 28668 1240 18118 18129 33211 33211 -0.011505363107289668 NLFGAEYQL 9 Unmodified _NLFGAEYQL_ 0 0 0 ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE MULTI-MSMS UPN47_class_I_Rep_2 3 527.7647705078125 2 527.763832 1053.51311 0.15756 8.3156E-05 -0.48971 -0.00025845 -0.33215 -0.0001753 527.763585091381 73.618 0.37184 76.923 76.709 77.08 3.3048 49 31 2 0 0 0 0.25805 2 18063 18063;18087 16.566 1.3742 1 73716 28669 1240 18118 18129 33212;33213 33212 -0.011505363107289668 NLFGAEYQL 9 Unmodified _NLFGAEYQL_ 0 0 0 ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE ENSG00000083457|ENST00000263087|ITGAE MSMS UPN47_class_I_Rep_3 4 527.7632446289062 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 73.656 1 76.893 76.393 77.393 3.2363 0 0 0 0.18341 1 18203 18203 17.443 1.2935 1 28670 1240 18118 18129 33214 33214 -0.011505363107289668 NLFIWEEE 8 Unmodified _NLFIWEEE_ 0 0 0 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 MSMS UPN46_class_I_Rep_3 1 540.2572021484375 2 540.25584 1078.49713 NaN NaN NaN NaN NaN NaN NaN 75.903 1 75.903 75.403 76.403 0 0 0 0 0.40746 1 17675 17675 0.69038 0 1 28671 1682 18119 18130 33215 33215 -0.03898242547620612 NLFKALFKL 9 Unmodified _NLFKALFKL_ 0 0 0 REV__ENSG00000100665|ENST00000557004|SERPINA4 REV__ENSG00000100665|ENST00000557004|SERPINA4 MSMS UPN47_class_I_Rep_2 3 547.3447265625 2 547.342052 1092.66955 NaN NaN NaN NaN NaN NaN NaN 92.901 1 96.37 95.87 96.87 3.4687 0 0 0 0.39518 1 22946 22946 1.8442 0 1 + 28672 18128 18120 18131 33216 33216 0.12692373650406807 NLFKALFKL 9 Unmodified _NLFKALFKL_ 0 0 0 REV__ENSG00000100665|ENST00000557004|SERPINA4 REV__ENSG00000100665|ENST00000557004|SERPINA4 MSMS UPN47_class_I_Rep_2 3 547.3447265625 2 547.342052 1092.66955 NaN NaN NaN NaN NaN NaN NaN 93.285 1 96.753 96.253 97.253 3.4687 0 0 0 0.39518 1 23026 23026 1.8442 0 1 + 28673 18128 18120 18131 33217 33217 0.12692373650406807 NLFKALFKL 9 Unmodified _NLFKALFKL_ 0 0 0 REV__ENSG00000100665|ENST00000557004|SERPINA4 REV__ENSG00000100665|ENST00000557004|SERPINA4 MSMS UPN48_class_I_Rep_3 7 547.3324584960938 2 547.342052 1092.66955 NaN NaN NaN NaN NaN NaN NaN 93.096 1 96.974 96.474 97.474 3.8782 0 0 0 0.39518 1 22059 22059 1.8442 0 1 + 28674 18128 18120 18131 33218 33218 0.12692373650406807 NLFKQVDLI 9 Unmodified _NLFKQVDLI_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MSMS UPN48_class_I_Rep_2 6 545.3169555664062 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 82.351 1 86.02 85.52 86.52 3.669 0 0 0 0.31276 1 19562 19562 10.074 0 1 28675 2505 18121 18132 33219 33219 0.08222889028479585 NLFNEEIAL 9 Unmodified _NLFNEEIAL_ 0 0 0 REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.77685546875 2 531.776939 1061.53933 0.32399 0.00017229 -0.006351 -3.3773E-06 0.31764 0.00016891 531.7770259345385 81.232 0.40453 81.232 80.987 81.391 0 62 42 3 0 0 0 0.38714 1 19208 19208 8.7454 0 1 202950 + 28676 24540 18122 18133 33220 33220 0.011017328607522359 NLFNEEIAL 9 Unmodified _NLFNEEIAL_ 0 0 0 REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.777099609375 2 531.776939 1061.53933 0.36546 0.00019434 -0.918 -0.00048817 -0.55253 -0.00029383 531.7767996694251 76.132 0.82034 79.535 79.182 80.002 3.4034 181 76 4 0 0 0 0.17897 1 18770 18770 22.736 1.1993 1 477530 + 28677 24540 18122 18133 33221 33221 0.011017328607522359 NLFNEEIAL 9 Unmodified _NLFNEEIAL_ 0 0 0 REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.7769165039062 2 531.776939 1061.53933 0.29959 0.00015931 -0.10637 -5.6566E-05 0.19322 0.00010275 531.7767667246724 76.261 0.73013 79.583 79.311 80.041 3.3216 132 73 3 0 0 0 0.057664 1 18855 18855 45.7 3.86 1 393620 + 28678 24540 18122 18133 33222 33222 0.011017328607522359 NLFNEEIAL 9 Unmodified _NLFNEEIAL_ 0 0 0 REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense REV__L1M4b_dup2948|chr10:96938246-96939682:+|1.2181990656656805|0.034466443712653|5.14|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 531.7767944335938 2 531.776939 1061.53933 0.41179 0.00021898 -0.4713 -0.00025063 -0.059513 -3.1648E-05 531.776788971963 76.36 0.7674 79.617 79.283 80.051 3.2573 188 78 4 0 0 0 0.025281 2 19000 18965;19000 60.074 5.5697 1 463140 + 28679 24540 18122 18133 33223;33224 33224 0.011017328607522359 NLFNRYPAL 9 Unmodified _NLFNRYPAL_ 0 0 0 ENSG00000136167|ENST00000323076|LCP1 ENSG00000136167|ENST00000323076|LCP1 ENSG00000136167|ENST00000323076|LCP1 MULTI-SECPEP UPN47_class_I_Rep_1 2 554.7688598632812 2 554.300916 1106.58728 0.43554 0.00024142 -0.19309 -0.00010703 0.24245 0.00013439 554.3004763448166 59.584 0.2416 62.983 62.819 63.061 3.3982 20 14 2 0 0 0 0.10699 1 13854 13854 15.847 7.2539 1 52436 28680 2953 18123 18134 33225 33225 0.03824851571448562 NLFNRYPAL 9 Unmodified _NLFNRYPAL_ 0 0 0 ENSG00000136167|ENST00000323076|LCP1 ENSG00000136167|ENST00000323076|LCP1 ENSG00000136167|ENST00000323076|LCP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 554.76904296875 2 554.300916 1106.58728 0.49663 0.00027528 -0.47107 -0.00026111 0.025563 1.4169E-05 554.3005023482743 59.777 0.22066 63.05 62.974 63.195 3.2731 19 13 2 0 0 0 0.12321 1 13950 13950 3.9444 0 1 52230 28681 2953 18123 18134 33226 33226 0.03824851571448562 NLFQKKHIL 9 Unmodified _NLFQKKHIL_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|107|2|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|107|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 571.285888671875 2 570.848033 1139.68151 0.34829 0.00019882 -0.83972 -0.00047935 -0.49143 -0.00028053 570.8479062336122 36.036 0.074425 36.036 35.971 36.045 0 6 5 2 0 0 0 0.12462 1 6614 6614 0.45834 0 1 28885 + 28682 32416 18124 18135 33227 33227 0.11725990393620123 NLFQYLQGFD 10 Unmodified _NLFQYLQGFD_ 0 0 0 REV__ENST00000472184.1_1_21:30378740-30380682:-|nuORF REV__ENST00000472184.1_1_21:30378740-30380682:-|nuORF MSMS UPN48_class_I_Rep_2 6 622.8014526367188 2 622.800946 1243.58734 NaN NaN NaN NaN NaN NaN NaN 67.37 1 70.867 70.367 71.367 3.4964 0 0 0 0.53105 1 15465 15465 1.6526 0 1 + 28683 19789 18125 18136 33228 33228 -0.024711932191848973 NLFVFQFS 8 Unmodified _NLFVFQFS_ 0 0 0 ENST00000284617.6_1_1:229460388-229460436:-|nuORF ENST00000284617.6_1_1:229460388-229460436:-|nuORF ENST00000284617.6_1_1:229460388-229460436:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 501.2583923339844 2 501.258185 1000.50182 0.29537 0.00014806 0.19793 9.9213E-05 0.4933 0.00024727 501.2582079608209 81.008 0.13292 84.671 84.621 84.754 3.6635 34 16 3 0 0 0 0.82752 1 19182 19182 7.9102 0 1 682390 28684 6037 18126 18137 33229 33229 0.0015868638581650885 NLGEPGNESSP 11 Unmodified _NLGEPGNESSP_ 0 0 0 MLT1E2_dup1580|chr6:127300313-127300912:+|1.0411327630790752|0.1123527793483802|3.21|150.0|13|2|sense MLT1E2_dup1580|chr6:127300313-127300912:+|1.0411327630790752|0.1123527793483802|3.21|150.0|13|2|sense MLT1E2_dup1580|chr6:127300313-127300912:+|1.0411327630790752|0.1123527793483802|3.21|150.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 550.7482299804688 2 550.746367 1099.47818 NaN NaN NaN NaN NaN NaN NaN 30.151 1 33.463 32.963 33.963 3.3116 0 0 0 0.38417 1 4966 4966 0.96228 0.16864 1 28685 16371 18127 18138 33230 33230 -0.067578239093109 NLGFTIQDI 9 Unmodified _NLGFTIQDI_ 0 0 0 L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|178|3|sense;L1PA3_dup3955|chr6:2064968-2070431:+|1.4686676283991853|0.0314840014374404|5.54|151.0|152|3|sense L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|178|3|sense L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|178|3|sense MSMS UPN47_class_I_Rep_3 4 510.7720031738281 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 79.285 1 82.58 82.08 83.08 3.295 0 0 0 0.38916 1 19809 19809 3.2813 0 1 28686 14261 18128 18139 33231 33231 0.019777502063448082 NLGTLVTGRP 10 Unmodified _NLGTLVTGRP_ 0 0 0 REV__L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|65|1|anti-sense REV__L1MC5_dup5172|chr6:16444133-16445508:+|1.1379018927247366|0.045365767506134|4.65|151.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.2984008789062 2 514.298373 1026.58219 0.2288 0.00011767 -0.27255 -0.00014017 -0.043751 -2.2501E-05 514.2982101387419 87.453 0.46898 90.9 90.669 91.138 3.4471 89 58 2 0 0 0 0.56333 1 21768 21768 1.4819 0.79152 1 104990 + 28687 27084 18129 18140 33232 33232 0.0699654770885445 NLHMNNPSPLC 11 Unmodified _NLHMNNPSPLC_ 0 0 0 REV__L1MC1_dup9184|chr11:60227555-60229211:+|2.2575838417653524|0.1015116596728816|4.48|149.0|105|3|anti-sense REV__L1MC1_dup9184|chr11:60227555-60229211:+|2.2575838417653524|0.1015116596728816|4.48|149.0|105|3|anti-sense MSMS UPN47_class_I_Rep_3 4 620.2866821289062 2 620.284082 1238.55361 NaN NaN NaN NaN NaN NaN NaN 45.14 1 48.384 47.884 48.884 3.2441 0 0 0 0.38417 1 9535 9535 1.0715 0.46996 1 + 28688 26620 18130 18141 33233 33233 -0.05612261254236728 NLHQKKKKK 9 Unmodified _NLHQKKKKK_ 0 0 0 REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|49|2|sense REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|49|2|sense MSMS UPN48_class_I_Rep_1 5 576.3509521484375 2 576.372207 1150.72986 NaN NaN NaN NaN NaN NaN NaN 77.551 1 81.073 80.573 81.573 3.5221 0 0 0 0.4007 1 18461 18461 0.52476 0 1 + 28689 27432 18131 18142 33234 33234 0.16052484033502878 NLIFCHVIF 9 Unmodified _NLIFCHVIF_ 0 0 0 L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|67|3|anti-sense L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|67|3|anti-sense L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_2 6 553.7311401367188 2 553.296788 1104.57902 NaN NaN NaN NaN NaN NaN NaN 86.107 1 89.813 89.313 90.313 3.7058 0 0 0 0.39326 1 20501 20501 2.3027 0 1 28690 9143 18132 18143 33235 33235 0.03091581330477311 NLIFLSGY 8 Unmodified _NLIFLSGY_ 0 0 0 L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|226|1|anti-sense L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|226|1|anti-sense L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|226|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 464.31512451171875 2 463.752736 925.490919 -0.41502 -0.00019246 0.080843 3.7491E-05 -0.33417 -0.00015497 463.7527587100949 43.156 0.27534 46.398 46.216 46.492 3.2419 20 17 2 0 0 0 0.72333 1 8920 8920 12.532 0 1 34039 28691 14825 18133 18144 33236 33236 0.025192840115323634 NLIGYPFKL 9 Unmodified _NLIGYPFKL_ 0 0 0 REV__ENST00000558614.1_1_15:65312597-65321867:-|nuORF REV__ENST00000558614.1_1_15:65312597-65321867:-|nuORF MSMS UPN46_class_I_Rep_3 1 532.8087768554688 2 532.810585 1063.60662 NaN NaN NaN NaN NaN NaN NaN 67.612 1 67.612 67.112 68.112 0 0 0 0 0.10315 1 15397 15397 24.021 5.6475 1 + 28692 18238 18134 18145 33237 33237 0.07735807862354704 NLIKVPYG 8 Unmodified _NLIKVPYG_ 0 0 0 L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|15|2|sense L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|15|2|sense L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|15|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2691955566406 2 452.268553 902.522553 0.025643 1.1598E-05 1.3924 0.00062972 1.418 0.00064132 452.26913238189815 34.318 0.067188 34.318 34.272 34.339 0 7 5 2 0 0 0 0.82752 1 6119 6119 2.5775 0 1 162380 28693 10837 18135 18146 33238 33238 0.06739276765472368 NLINKYFPG 9 Unmodified _NLINKYFPG_ 0 0 0 nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1 nc|ENSG00000073060|Q8WTV0-3|SCARB1 nc|ENSG00000073060|Q8WTV0-3|SCARB1 MULTI-MSMS UPN47_class_I_Rep_3 4 533.308349609375 2 533.290017 1064.56548 0.35688 0.00019032 0.29974 0.00015985 0.65662 0.00035017 533.2902790290143 61.995 0.5818 65.162 64.918 65.499 3.1667 69 42 2 0 0 0 0.25207 1 14703 14703 16.942 1.0951 1 79056 28694 1109 18136 18147 33239 33239 0.03578046822894976 NLINTQVF 8 Unmodified _NLINTQVF_ 0 0 0 REV__ENSG00000103184|ENST00000251170|SEC14L5 REV__ENSG00000103184|ENST00000251170|SEC14L5 MULTI-MSMS UPN47_class_I_Rep_3 4 474.7608947753906 2 474.761092 947.507631 -0.32869 -0.00015605 -1.0981 -0.00052133 -1.4268 -0.00067738 474.76101280312105 42.459 0.99269 45.699 45.236 46.228 3.2394 114 69 2 0 0 0 0.82752 1 8826 8826 12.532 0.89125 1 151710 + 28695 18217 18137 18148 33240 33240 0.03177784897479796 NLISLWTEI 9 Unmodified _NLISLWTEI_ 0 0 0 L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|49|3|sense L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|49|3|sense L1MEc_dup8704|chr7:152124817-152126124:+|2.129796077137125|0.0907159845938679|4.55|151.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.8026733398438 2 544.802957 1087.59136 0.34834 0.00018978 -0.15048 -8.1984E-05 0.19786 0.00010779 544.8027349364249 66.93 0.71021 70.193 69.914 70.624 3.2636 79 52 2 0 0 0 0.19147 2 16167 16167;16234 21.537 2.175 1 87549 28696 13149 18138 18149 33241;33242 33241 0.05106896274492101 NLITPAKRL 9 Unmodified _NLITPAKRL_ 0 0 0 MLT1D_dup16680|chr15:60431222-60431716:+|1.1506041224818089|0.2022683559143238|2.51|151.0|27|1|anti-sense MLT1D_dup16680|chr15:60431222-60431716:+|1.1506041224818089|0.2022683559143238|2.51|151.0|27|1|anti-sense MLT1D_dup16680|chr15:60431222-60431716:+|1.1506041224818089|0.2022683559143238|2.51|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 513.3271484375 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.873 1 63.36 62.86 63.86 3.4868 0 0 0 0.32573 1 13173 13173 9.3831 0 1 28697 16340 18139 18150 33243 33243 0.12798014985219197 NLKAHFWI 8 Unmodified _NLKAHFWI_ 0 0 0 L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|69|3|anti-sense L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|69|3|anti-sense L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|69|3|anti-sense MSMS UPN47_class_I_Rep_1 2 514.7890014648438 2 514.787444 1027.56034 NaN NaN NaN NaN NaN NaN NaN 49.848 1 53.507 53.007 54.007 3.6592 0 0 0 0.40604 1 10879 10879 2.5775 0 1 28698 8854 18140 18151 33244 33244 0.04765787750943673 NLKDNNEI 8 Unmodified _NLKDNNEI_ 0 0 0 nc|ENSG00000107890|Q9UPS8-2|ANKRD26;ENSG00000107890|ENST00000376087|ANKRD26 nc|ENSG00000107890|Q9UPS8-2|ANKRD26 nc|ENSG00000107890|Q9UPS8-2|ANKRD26 MULTI-MSMS UPN46_class_I_Rep_3 1 480.24310302734375 2 480.243264 958.471974 0.014244 6.8406E-06 -0.15541 -7.4633E-05 -0.14116 -6.7792E-05 480.24324315790466 30.364 0.64416 30.364 30.105 30.749 0 76 50 2 0 0 0 0.82752 1 4994 4994 4.3292 0 1 123820 28699 1840 18141 18152 33245 33245 -0.008922973501853448 NLKIDEYPL 9 Unmodified _NLKIDEYPL_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS UPN48_class_I_Rep_2 6 552.79931640625 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 63.354 1 66.828 66.328 67.328 3.4738 0 0 0 0.37476 1 14236 14236 6.7232 2.3939 1 + 28700 19845 18142 18153 33246 33246 0.03862592411906007 NLKLIFLPLLH 11 Unmodified _NLKLIFLPLLH_ 0 0 0 REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|103|2|anti-sense REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|103|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.2971496582031 3 440.951586 1319.83293 0.18145 8.0009E-05 1.5636 0.00068946 1.745 0.00076947 440.9519941119149 65.172 0.332 68.679 68.435 68.767 3.5077 28 22 2 0 0 0 0.68024 1 14711 14711 0.50596 0 1 107940 + 28701 28766 18143 18154 33247 33247 0.18580551701461445 NLKLKIGL 8 Unmodified _NLKLKIGL_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539.14,ASH1L,chr1,-,I7.1,155440594,155459796|59|13.72|2|intron;ASH1L|p.S183Tfs*23|1|0.04|ENSG00000116539|chr1:155482323-155482324|-/GT|frameshift_variant ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS UPN47_class_I_Rep_1 2 449.8074035644531 2 449.807845 897.601138 -0.13998 -6.2964E-05 -0.38729 -0.0001742 -0.52727 -0.00023717 449.80765631466653 48.141 0.40955 51.823 51.508 51.917 3.6819 34 19 2 0 0 0 0.82752 1 10363 10363 8.5933 0 1 76999 28702 2187 18144 18155 33248 33248 0.14824129070552772 NLKLKIGL 8 Unmodified _NLKLKIGL_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539.14,ASH1L,chr1,-,I7.1,155440594,155459796|59|13.72|2|intron;ASH1L|p.S183Tfs*23|1|0.04|ENSG00000116539|chr1:155482323-155482324|-/GT|frameshift_variant ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MATCH UPN47_class_I_Rep_3 4 2 449.807845 897.601138 -0.27158 -0.00012216 -0.56595 -0.00025457 -0.83753 -0.00037673 449.8076443740367 48.669 0.69168 51.904 51.6 52.291 3.2345 0.040293 -9.26E-05 NaN 8.5933 43 35 2 NaN NaN NaN NaN 0 NaN NaN 0 60059 28703 2187 18144 18155 0.14824129070552772 NLKLLFRRKMK 11 Unmodified _NLKLLFRRKMK_ 0 0 0 ENST00000465876.5_1_1:60281005-60331594:+|nuORF ENST00000465876.5_1_1:60281005-60331594:+|nuORF ENST00000465876.5_1_1:60281005-60331594:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 482.97509765625 3 482.974508 1445.90169 0.13372 6.4583E-05 0.80944 0.00039094 0.94316 0.00045552 482.97469925884053 50.736 1.074 54.26 53.654 54.728 3.5246 182 67 3 0 0 0 0.68478 1 10258 10258 0.094841 0 1 222940 28704 6895 18145 18156 33249 33249 0.19657892729492232 NLKLVSPRM 9 Unmodified _NLKLVSPRM_ 0 0 0 ENST00000491404.1_1_6:74228839-74228917:-|nuORF ENST00000491404.1_1_6:74228839-74228917:-|nuORF ENST00000491404.1_1_6:74228839-74228917:-|nuORF MSMS UPN47_class_I_Rep_3 4 529.3117065429688 2 529.312969 1056.61138 NaN NaN NaN NaN NaN NaN NaN 82.051 1 85.388 84.888 85.888 3.337 0 0 0 0.39598 1 20556 20556 1.6526 0.17072 1 28705 7074 18146 18157 33250 33250 0.08534368733489828 NLKLWKTY 8 Unmodified _NLKLWKTY_ 0 0 0 L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|23|1|sense;L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|57|2|sense L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|23|1|sense L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|23|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 533.30859375 2 533.30821 1064.60187 0.3623 0.00019322 0.59247 0.00031597 0.95476 0.00050918 533.3084365650737 62.208 0.87263 65.375 65.029 65.902 3.1667 121 57 3 0 0 0 0.82752 1 14793 14793 14.582 0 1 216590 28706 15097 18147 18158 33251 33251 0.07214923719629951 NLKMPPPL 8 Unmodified _NLKMPPPL_ 0 0 0 REV__ENST00000587261.5_1_18:39637878-39644709:+|nuORF REV__ENST00000587261.5_1_18:39637878-39644709:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 455.2655944824219 2 455.264956 908.515359 -0.030015 -1.3665E-05 0.0079229 3.607E-06 -0.022092 -1.0058E-05 455.2649007680615 54.358 0.81203 57.676 57.064 57.876 3.3187 73 46 2 0 0 0 0.82752 1 12104 12104 2.5775 0 1 81175 + 28707 17883 18148 18159 33252 33252 0.05744220893404872 NLKQGSLL 8 Unmodified _NLKQGSLL_ 0 0 0 REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|14|1|sense REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.7631530761719 2 436.763635 871.512717 -0.029543 -1.2903E-05 0.073642 3.2164E-05 0.044098 1.9261E-05 436.76355260436776 53.972 0.69799 57.5 57.188 57.886 3.5278 72 38 2 0 0 0 0.82752 1 12069 12069 12.532 0 1 193100 + 28708 23893 18149 18160 33253 33253 0.07182088760112038 NLKQNKPKE 9 Unmodified _NLKQNKPKE_ 0 0 0 L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|42|2|sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|42|2|sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|42|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 549.8165283203125 2 549.81693 1097.61931 -0.091442 -5.0276E-05 -0.41385 -0.00022754 -0.50529 -0.00027782 549.8166001308059 12.561 0.16628 16.01 15.918 16.084 3.45 45 22 3 0 0 0 0.12354 1 105 105 3.5965 0.60125 1 55973 28709 11952 18150 18161 33254 33254 0.07440219254613112 NLKVKEWEWM 10 Unmodified _NLKVKEWEWM_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|20|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 455.268798828125 3 454.900674 1361.68019 NaN NaN NaN NaN NaN NaN NaN 17.853 1 21.379 20.879 21.879 3.5261 0 0 0 0.53105 1 1104 1104 0.69767 0.24315 1 + 28710 23823 18151 18162 33255 33255 0.013819882425423202 NLKVKVLF 8 Unmodified _NLKVKVLF_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_1 2 480.8148498535156 2 480.81567 959.616788 -0.049235 -2.3673E-05 -0.23578 -0.00011337 -0.28501 -0.00013704 480.8154532975436 48.955 0.8968 52.614 52.123 53.019 3.6592 127 61 3 0 0 0 0.82752 2 10572 10572;10614 60.39 24.345 1 158850 28711 2128 18152 18163 33256;33257 33256 0.13536415587623196 NLKVKVLF 8 Unmodified _NLKVKVLF_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_2 3 480.8155212402344 2 480.81567 959.616788 0.14444 6.9448E-05 -0.35488 -0.00017063 -0.21044 -0.00010118 480.81546824883725 49.383 1.1955 52.729 52.245 53.44 3.3465 135 77 3 0 0 0 0.82752 2 10809 10753;10809 38.151 6.0342 1 180590 28712 2128 18152 18163 33258;33259 33259 0.13536415587623196 NLKVKVLF 8 Unmodified _NLKVKVLF_ 0 0 0 nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1 nc|ENSG00000115415|P42224-2|STAT1 nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS UPN47_class_I_Rep_3 4 480.8153381347656 2 480.81567 959.616788 0.10461 5.03E-05 -0.47161 -0.00022676 -0.367 -0.00017646 480.81536337462995 49.475 0.92551 52.708 52.355 53.28 3.2331 86 54 2 0 0 0 0.82752 2 10847 10847;10891 50.855 18.738 1 176400 28713 2128 18152 18163 33260;33261 33260 0.13536415587623196 NLKYIKKKE 9 Unmodified _NLKYIKKKE_ 0 0 0 L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|115|2|sense L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|115|2|sense L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|115|2|sense MSMS UPN48_class_I_Rep_3 7 582.769287109375 2 582.360973 1162.70739 NaN NaN NaN NaN NaN NaN NaN 24.403 1 28.172 27.672 28.672 3.769 0 0 0 0.40098 1 2818 2818 0.45834 0 1 28714 14313 18153 18164 33262 33262 0.13254839845239985 NLLHTIVF 8 Unmodified _NLLHTIVF_ 0 0 0 REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|239|1|anti-sense REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|239|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.7814025878906 2 478.781828 955.549102 0.27299 0.0001307 -0.53657 -0.0002569 -0.26358 -0.0001262 478.7814447684091 67.511 0.49957 71.019 70.901 71.4 3.5077 65 45 2 0 0 0 0.82752 1 15421 15421 16.942 4.4107 1 120840 + 28715 30164 18154 18165 33263 33263 0.06954965656814238 NLLIMLTVCL 10 Unmodified _NLLIMLTVCL_ 0 0 0 ENSG00000174982|ENST00000641692|OR4S2 ENSG00000174982|ENST00000641692|OR4S2 ENSG00000174982|ENST00000641692|OR4S2 MSMS UPN48_class_I_Rep_1 5 566.8282470703125 2 566.827063 1131.63957 NaN NaN NaN NaN NaN NaN NaN 21.265 1 24.818 24.318 25.318 3.5533 0 0 0 0.53105 1 1921 1921 1.6526 0 1 28716 4702 18155 18166 33264 33264 0.07901930598563922 NLLLAQMYL 9 Unmodified _NLLLAQMYL_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|287|1|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|287|1|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|287|1|anti-sense MSMS UPN48_class_I_Rep_3 7 539.8038330078125 2 539.801903 1077.58925 NaN NaN NaN NaN NaN NaN NaN 31.623 1 35.324 34.824 35.824 3.7015 0 0 0 0.39428 1 4705 4705 2.0598 1.2661 1 28717 13836 18156 18167 33265 33265 0.05356144265056173 NLLPAGFT 8 Unmodified _NLLPAGFT_ 0 0 0 REV__HAL1_dup4583|chr3:58377661-58378426:+|1.372199568527206|0.01575956614748|6.44|151.0|26|3|sense REV__HAL1_dup4583|chr3:58377661-58378426:+|1.372199568527206|0.01575956614748|6.44|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 416.7562561035156 2 416.731803 831.449054 NaN NaN NaN NaN NaN NaN NaN 26.169 1 26.169 25.669 26.669 0 0 0 0 0.40404 1 3700 3700 5.2307 0 1 + 28718 23425 18157 18168 33266 33266 0.026587283230128378 NLLPEMIKV 9 Unmodified _NLLPEMIKV_ 0 0 0 L1M3_dup3270|chr9:36349267-36349854:-|1.4182552011328855|0.2379872720905259|2.58|151.0|11|2|sense L1M3_dup3270|chr9:36349267-36349854:-|1.4182552011328855|0.2379872720905259|2.58|151.0|11|2|sense L1M3_dup3270|chr9:36349267-36349854:-|1.4182552011328855|0.2379872720905259|2.58|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 528.8186645507812 2 528.809728 1055.6049 NaN NaN NaN NaN NaN NaN NaN 63.914 1 67.269 66.769 67.769 3.3557 0 0 0 0.15455 1 15155 15155 19.257 0 1 28719 8759 18158 18169 33267 33267 0.07932430782102529 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1 ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS UPN46_class_I_Rep_3 1 523.8394775390625 2 523.839677 1045.6648 0.26994 0.0001414 -0.30969 -0.00016223 -0.039757 -2.0826E-05 523.8395736820479 65.667 0.25968 65.667 65.455 65.715 0 43 28 2 0 0 0 0.10817 1 14843 14843 32.305 0 1 175860 28720 4422;5600 18159 18170 33268 33268 0.14379489507655308 NLLQYQVF 8 Unmodified _NLLQYQVF_ 0 0 0 L1M4_dup3804|chr3:122744804-122745410:+|2.0129697615234723|0.277872102177981|2.86|151.0|20|3|sense L1M4_dup3804|chr3:122744804-122745410:+|2.0129697615234723|0.277872102177981|2.86|151.0|20|3|sense L1M4_dup3804|chr3:122744804-122745410:+|2.0129697615234723|0.277872102177981|2.86|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 512.7777099609375 2 512.776742 1023.53893 0.3557 0.0001824 -0.14535 -7.4535E-05 0.21035 0.00010786 512.7766422519037 76.118 0.19037 79.701 79.602 79.792 3.5831 31 18 2 0 0 0 0.82752 1 17913 17913 19.439 0 1 90695 28721 8888 18160 18171 33269 33269 0.028103579315711613 NLLRNSLTV 9 Unmodified _NLLRNSLTV_ 0 0 0 HAL1_dup7385|chr5:70443695-70444376:+|1.5121121583991624|0.2858462356680548|2.4|151.0|31|2|anti-sense HAL1_dup7385|chr5:70443695-70444376:+|1.5121121583991624|0.2858462356680548|2.4|151.0|31|2|anti-sense HAL1_dup7385|chr5:70443695-70444376:+|1.5121121583991624|0.2858462356680548|2.4|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 515.3059692382812 2 515.306198 1028.59784 NaN NaN NaN NaN NaN NaN NaN 87.741 1 91.378 90.878 91.878 3.6372 0 0 0 0.39598 1 21929 21929 1.6526 0 1 28722 7910 18161 18172 33270 33270 0.08468834225868704 NLLSFAKGCER 11 Unmodified _NLLSFAKGCER_ 0 0 0 REV__ENSG00000197782|ENST00000683561|ZNF780A REV__ENSG00000197782|ENST00000683561|ZNF780A MSMS UPN48_class_I_Rep_2 6 619.3220825195312 2 619.321522 1236.62849 NaN NaN NaN NaN NaN NaN NaN 111.78 1 115.44 114.94 115.94 3.6666 0 0 0 0.38417 1 26598 26598 0.96228 0.36078 1 + 28723 18890 18162 18173 33271 33271 0.019642445486397264 NLLVENKKY 9 Unmodified _NLLVENKKY_ 0 0 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MULTI-MSMS UPN47_class_I_Rep_2 3 560.8226928710938 2 560.821681 1119.62881 0.045172 2.5333E-05 0.13129 7.3631E-05 0.17646 9.8964E-05 560.8216274155925 40.01 0.59559 43.381 43.082 43.677 3.3712 50 39 2 0 0 0 0.38714 1 7933 7933 8.7454 0 1 71374 28724 4191 18163 18174 33272 33272 0.07377987540144204 NLLVYKSK 8 Unmodified _NLLVYKSK_ 0 0 0 REV__ENSG00000055483|ENST00000449938|USP36 REV__ENSG00000055483|ENST00000449938|USP36 MULTI-SECPEP UPN46_class_I_Rep_3 1 483.29022216796875 2 482.794935 963.575317 -0.013831 -6.6774E-06 1.3473 0.00065048 1.3335 0.0006438 482.7954487740605 28.767 0.084368 28.767 28.73 28.814 0 8 5 2 0 0 0 0.72333 1 4453 4453 0 0 1 109700 + 28725 17697 18164 18175 33273 33273 0.09207234828272703 NLMWRQSFRSM 11 Unmodified _NLMWRQSFRSM_ 0 0 0 ENST00000430246.6_1_14:21702150-21702276:-|nuORF ENST00000430246.6_1_14:21702150-21702276:-|nuORF ENST00000430246.6_1_14:21702150-21702276:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 485.23712158203125 3 485.904313 1454.69111 0.13183 6.4055E-05 0.82985 0.00040323 0.96167 0.00046728 485.9054921505767 31.543 0.055792 35.244 35.192 35.248 3.7015 6 5 2 0 0 0 22.551 1 4684 4684 1.4551 0 1 36191 28726 6719 18165 18176 33274 33274 -0.018049326548407407 NLMWRQSFRSM 11 Unmodified _NLMWRQSFRSM_ 0 0 0 ENST00000430246.6_1_14:21702150-21702276:-|nuORF ENST00000430246.6_1_14:21702150-21702276:-|nuORF ENST00000430246.6_1_14:21702150-21702276:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 485.904313 1454.69111 0.2532 0.00012303 -1.1737 -0.00057029 -0.92047 -0.00044726 485.90466632025465 31.564 0.10175 35.205 35.152 35.254 3.641 -0.019681 -0.0012886 NaN 1.4551 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 43618 28727 6719 18165 18176 -0.018049326548407407 NLNKQAYDL 9 Unmodified _NLNKQAYDL_ 0 0 0 nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF nc|ENSG00000083642|Q9NTI5-2|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B MULTI-MSMS UPN48_class_I_Rep_2 6 539.7801513671875 2 539.780013 1077.54547 0.43428 0.00023442 -0.38578 -0.00020823 0.048508 2.6183E-05 539.7797420363706 50.15 0.78839 53.845 53.381 54.169 3.6946 78 50 2 0 0 0 0.37599 1 10294 10294 9.3831 1.2276 1 267240 28728 1243 18166 18177 33275 33275 0.009802510922781948 NLNKYMHIHTH 11 Unmodified _NLNKYMHIHTH_ 0 0 0 L1MC5a_dup11629|chr11:116937169-116937922:+|1.382262125877221|0.0249562541105969|5.79|151.0|42|2|anti-sense L1MC5a_dup11629|chr11:116937169-116937922:+|1.382262125877221|0.0249562541105969|5.79|151.0|42|2|anti-sense L1MC5a_dup11629|chr11:116937169-116937922:+|1.382262125877221|0.0249562541105969|5.79|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_2 6 469.77105712890625 3 469.903189 1406.68774 NaN NaN NaN NaN NaN NaN NaN 52.846 1 56.456 55.956 56.956 3.6098 0 0 0 0.38417 1 11019 11019 0.50596 0.34663 1 28729 11710 18167 18178 33276 33276 0.0006614056280795921 NLNRYLYIM 9 Unmodified _NLNRYLYIM_ 0 0 0 L1MB3_dup13038|chr14:63536241-63537038:+|1.2755473104973067|0.0133183871867501|6.58|150.0|22|3|sense L1MB3_dup13038|chr14:63536241-63537038:+|1.2755473104973067|0.0133183871867501|6.58|150.0|22|3|sense L1MB3_dup13038|chr14:63536241-63537038:+|1.2755473104973067|0.0133183871867501|6.58|150.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 600.3150634765625 2 600.315709 1198.61686 NaN NaN NaN NaN NaN NaN NaN 55.887 1 59.443 58.943 59.943 3.5559 0 0 0 0.39518 1 11952 11952 1.8442 0 1 28730 10338 18168 18179 33277 33277 0.025500475252783872 NLNYFSNAY 9 Unmodified _NLNYFSNAY_ 0 0 0 ENSG00000064313.12,TAF2,chr8,-,I9.1,119793452,119795531|35|6.98|2|intron;ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313.12,TAF2,chr8,-,I9.1,119793452,119795531|35|6.98|2|intron ENSG00000064313.12,TAF2,chr8,-,I9.1,119793452,119795531|35|6.98|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 553.2518920898438 2 553.251089 1104.48762 0.34206 0.00018924 0.0021077 1.1661E-06 0.34416 0.00019041 553.2510415575955 58.944 0.35787 62.11 61.98 62.338 3.1658 33 19 3 0 0 0 0.30034 1 13784 13784 13.906 3.8321 1 398900 28731 990 18169 18180 33278 33278 -0.06044010833147695 NLPFVNAFKK 10 Unmodified _NLPFVNAFKK_ 0 0 0 REV__ENSG00000196437|ENST00000316950|ZNF569 REV__ENSG00000196437|ENST00000316950|ZNF569 MSMS UPN47_class_I_Rep_1 2 589.3428955078125 2 589.340041 1176.66553 NaN NaN NaN NaN NaN NaN NaN 97.246 1 101.02 100.52 101.52 3.7767 0 0 0 0.53105 1 24101 24101 1.4819 0.79152 1 + 28732 21040 18170 18181 33279 33279 0.0842628415668969 NLPLATKR 8 Unmodified _NLPLATKR_ 0 0 0 nc|ENSG00000077463|Q8N6T7-2|SIRT6;ENSG00000077463|ENST00000337491|SIRT6 nc|ENSG00000077463|Q8N6T7-2|SIRT6 nc|ENSG00000077463|Q8N6T7-2|SIRT6 MSMS UPN47_class_I_Rep_3 4 456.784423828125 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 20.836 1 24.186 23.686 24.686 3.3496 0 0 0 0.40746 1 2224 2224 0.69038 0 1 28733 1174 18171 18182 33280 33280 0.09593483888329501 NLQEGEFLL 9 Unmodified _NLQEGEFLL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-SECPEP UPN47_class_I_Rep_2 3 531.7775268554688 2 531.776939 1061.53933 0.27732 0.00014747 -0.0097187 -5.1682E-06 0.2676 0.00014231 531.776906171545 73.958 0.57944 77.263 77.047 77.627 3.3048 97 62 2 0 0 0 0.095537 1 18194 18194 21.537 21.537 1 158450 28734 1792 18172 18183 33281 33281 0.011017328607749732 NLQEGEFLL 9 Unmodified _NLQEGEFLL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS UPN47_class_I_Rep_3 4 531.7769165039062 2 531.776939 1061.53933 0.40464 0.00021518 -0.092528 -4.9204E-05 0.31211 0.00016597 531.7768819808534 74.041 0.61832 77.278 76.979 77.597 3.2363 126 68 2 0 0 0 0.32682 1 18286 18286 12.241 12.241 1 143630 28735 1792 18172 18183 33282 33282 0.011017328607749732 NLQKKHAL 8 Unmodified _NLQKKHAL_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS UPN47_class_I_Rep_1 2 476.2902526855469 2 476.290351 950.566149 -0.38906 -0.00018531 -0.54839 -0.00026119 -0.93745 -0.0004465 476.29013108776746 13.786 0.23493 17.243 17.179 17.413 3.457 32 28 2 0 0 0 0.82752 1 416 416 9.3474 3.587 1 46824 28736 5383 18173 18184 33283 33283 0.08888886262604956 NLQKKHAL 8 Unmodified _NLQKKHAL_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS UPN47_class_I_Rep_2 3 476.28985595703125 2 476.290351 950.566149 -0.26438 -0.00012592 -0.60274 -0.00028708 -0.86713 -0.000413 476.2900668795483 13.859 0.1784 17.246 17.186 17.365 3.3871 33 20 2 0 0 0 0.82752 1 432 432 9.3474 0 1 32907 28737 5383 18173 18184 33284 33284 0.08888886262604956 NLQNGIKLS 9 Unmodified _NLQNGIKLS_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|116|2|sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|116|2|sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|116|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.7746887207031 2 493.785099 985.555644 0.0083158 4.1062E-06 0.28603 0.00014124 0.29435 0.00014534 493.7852153192675 49.897 0.537 53.526 53.352 53.889 3.6285 48 29 2 0 0 0 0.30034 1 10968 10968 13.906 0 1 133280 28738 13642 18174 18185 33285 33285 0.06228858817530636 NLQRGIHW 8 Unmodified _NLQRGIHW_ 0 0 0 Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|108|2|anti-sense Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|108|2|anti-sense Tigger1_dup6554|chr8:120659263-120661259:-|2.690286163231289|0.0442454069734049|5.93|151.0|108|2|anti-sense MSMS UPN47_class_I_Rep_2 3 512.2780151367188 2 512.277775 1022.541 NaN NaN NaN NaN NaN NaN NaN 50.277 1 53.62 53.12 54.12 3.3431 0 0 0 0.40604 1 11037 11037 2.5775 0 1 28739 33163 18175 18186 33286 33286 0.030628314600448903 NLRGHILF 8 Unmodified _NLRGHILF_ 0 0 0 nc|ENSG00000113971|Q7Z494-4|NPHP3 nc|ENSG00000113971|Q7Z494-4|NPHP3 nc|ENSG00000113971|Q7Z494-4|NPHP3 MSMS UPN48_class_I_Rep_3 7 485.2864685058594 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 58.254 1 61.785 61.285 62.285 3.5317 0 0 0 0.40738 1 12606 12606 0.79363 0 1 28740 16665 18176 18187 33287 33287 0.07004903608196855 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.6080627441406 3 466.607652 1396.80113 0.23017 0.0001074 0.42057 0.00019624 0.65074 0.00030364 466.60780084743493 97.18 0.14464 97.18 97.059 97.203 0 32 14 3 0 0 0 0.6724 1 23627 23627 1.2148 0 1 424910 + 28741 29473 18177 18188 33288 33288 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.60791015625 3 466.607652 1396.80113 0.23045 0.00010753 0.2898 0.00013522 0.52025 0.00024275 466.94215215074445 97.41 0.24947 97.41 97.335 97.585 0 72 27 4 0 0 0 0.65674 1 23731 23731 2.6312 1.039 1 983190 + 28742 29473 18177 18188 33289 33289 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 466.60791015625 3 466.607652 1396.80113 0.23022 0.00010742 0.46481 0.00021688 0.69503 0.00032431 466.60779304373585 97.62 0.2307 97.62 97.554 97.785 0 51 28 3 0 0 0 0.67113 1 23767 23767 1.3296 0.63198 1 579510 + 28743 29473 18177 18188 33290 33290 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 466.607652 1396.80113 0.23017 0.0001074 0.42057 0.00019624 0.65074 0.00030364 466.60780084743493 97.18 0.14464 97.18 97.059 97.203 0 0.063932 7.7989E-05 NaN 1.2148 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 424910 + 28744 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 466.607652 1396.80113 0.23045 0.00010753 0.2898 0.00013522 0.52025 0.00024275 466.94215215074445 97.41 0.24947 97.41 97.335 97.585 0 -0.12067 -0.00026547 NaN 2.6312 72 27 4 NaN NaN NaN NaN 0 NaN NaN 0 983190 + 28745 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 466.607652 1396.80113 0.21516 0.00010039 0.48165 0.00022474 0.69681 0.00032513 466.6077825331087 94.038 0.36089 97.774 97.579 97.94 3.736 0.0044516 2.6328E-05 NaN 1.3296 69 47 2 NaN NaN NaN NaN 0 NaN NaN 0 117050 + 28746 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 466.607652 1396.80113 -0.0031681 -1.4783E-06 0.34073 0.00015898 0.33756 0.00015751 466.60769708365683 93.684 0.18001 97.089 96.969 97.149 3.4052 -0.027363 -3.378E-05 NaN 1.2148 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 192770 + 28747 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 466.607652 1396.80113 -0.0012734 -5.9416E-07 0.38127 0.0001779 0.37999 0.00017731 466.607788092466 94.403 0.077286 97.81 97.742 97.819 3.4068 0.040432 -0.00011419 NaN 1.3296 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 108730 + 28748 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 466.607652 1396.80113 -0.0015232 -7.1072E-07 0.57592 0.00026873 0.5744 0.00026802 466.60790700677376 94.291 0.067413 97.698 97.668 97.735 3.4068 0.16689 0.00013505 NaN 2.6312 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 100190 + 28749 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 466.607652 1396.80113 0.065188 3.0417E-05 0.76151 0.00035533 0.8267 0.00038575 466.60793406684377 93.864 0.51762 97.484 97.384 97.902 3.6208 -0.04622 0.00039485 NaN 2.6312 86 58 2 NaN NaN NaN NaN 0 NaN NaN 0 239760 + 28750 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 466.607652 1396.80113 0.19673 9.1796E-05 0.31112 0.00014517 0.50785 0.00023697 466.6079307889324 94.098 0.087204 97.874 97.803 97.89 3.7761 0.10424 -0.00021238 NaN 1.3296 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 66107 + 28751 29473 18177 18188 0.11859952000213525 NLRIQRNKNKN 11 Unmodified _NLRIQRNKNKN_ 0 0 0 REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense REV__L1PA17_dup3929|chr14:70571588-70573571:+|1.0491906795307395|0.2144775344359702|2.29|151.0|9|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 466.607652 1396.80113 0.20232 9.4402E-05 0.34928 0.00016298 0.5516 0.00025738 466.6077539812211 93.188 0.19724 97.08 97.001 97.199 3.8914 -0.036569 -2.1798E-05 NaN 1.2148 58 25 3 NaN NaN NaN NaN 0 NaN NaN 0 344110 + 28752 29473 18177 18188 0.11859952000213525 NLRLHPLM 8 Unmodified _NLRLHPLM_ 0 0 0 MSTB1_dup659|chr2:202744153-202744544:-|1.0851440250480795|0.00867959369951|6.97|151.0|18|1|anti-sense MSTB1_dup659|chr2:202744153-202744544:-|1.0851440250480795|0.00867959369951|6.97|151.0|18|1|anti-sense MSTB1_dup659|chr2:202744153-202744544:-|1.0851440250480795|0.00867959369951|6.97|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.2796936035156 2 497.286754 992.558955 NaN NaN NaN NaN NaN NaN NaN 40.021 1 43.526 43.026 44.026 3.5048 0 0 0 0.40738 1 7133 7133 0.79363 0 1 28753 16586 18178 18189 33291 33291 0.06237830390534782 NLRNHQKN 8 Unmodified _NLRNHQKN_ 0 0 0 L1PB1_dup10914|chr14:30975037-30975553:+|1.4299996236717656|0.019532584022179|6.19|151.0|17|3|sense L1PB1_dup10914|chr14:30975037-30975553:+|1.4299996236717656|0.019532584022179|6.19|151.0|17|3|sense L1PB1_dup10914|chr14:30975037-30975553:+|1.4299996236717656|0.019532584022179|6.19|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.278076171875 2 512.275764 1022.53697 0.092793 4.7536E-05 3.3374 0.0017097 3.4302 0.0017572 512.2772572357443 49.746 0.41957 53.406 53.148 53.568 3.6592 31 24 2 0 0 0 0.82752 1 10878 10878 7.9102 1.5561 1 54680 28754 15001 18179 18190 33292 33292 0.02660741966326441 NLRNHQKN 8 Unmodified _NLRNHQKN_ 0 0 0 L1PB1_dup10914|chr14:30975037-30975553:+|1.4299996236717656|0.019532584022179|6.19|151.0|17|3|sense L1PB1_dup10914|chr14:30975037-30975553:+|1.4299996236717656|0.019532584022179|6.19|151.0|17|3|sense L1PB1_dup10914|chr14:30975037-30975553:+|1.4299996236717656|0.019532584022179|6.19|151.0|17|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 512.275764 1022.53697 0.09849 5.0454E-05 2.3046 0.0011806 2.4031 0.0012311 512.7782767557815 49.787 0.080822 53.13 53.066 53.147 3.3431 -0.13797 -0.00076496 NaN 7.9102 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 28538 28755 15001 18179 18190 0.02660741966326441 NLRNYYTLKT 10 Unmodified _NLRNYYTLKT_ 0 0 0 REV__Charlie1a_dup4097|chr12:6990947-6991915:-|2.094660113775777|0.1260027628239914|4.06|151.0|34|3|sense REV__Charlie1a_dup4097|chr12:6990947-6991915:-|2.094660113775777|0.1260027628239914|4.06|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 643.3623046875 2 643.348594 1284.68264 NaN NaN NaN NaN NaN NaN NaN 57.209 1 60.377 59.877 60.877 3.1681 0 0 0 0.53105 1 13203 13203 1.4819 0 1 + 28756 17324 18180 18191 33293 33293 0.05168159971822206 NLRPHKNL 8 Unmodified _NLRPHKNL_ 0 0 0 L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|22|3|sense;L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|55|2|sense;L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|48|2|sense L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|22|3|sense L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 496.2956848144531 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 37.396 1 37.396 36.896 37.896 0 0 0 0 0.39819 1 7028 7028 8.5933 2.8329 1 28757 11210 18181 18192 33294 33294 0.0766340449412155 NLRPHWKIAL 10 Unmodified _NLRPHWKIAL_ 0 0 0 REV__ENST00000478193.5_1_10:73975797-73990192:+|nuORF REV__ENST00000478193.5_1_10:73975797-73990192:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 624.3731689453125 2 624.372207 1246.72986 0.63459 0.00039622 0.046704 2.9161E-05 0.68129 0.00042538 624.3720584902031 98.87 0.14362 102.36 102.31 102.45 3.4897 38 21 2 0 0 0 0.56333 1 24242 24242 1.4819 0.15237 1 667730 + 28758 22550 18182 18193 33295 33295 0.11636484033533634 NLRPHWKIAL 10 Unmodified _NLRPHWKIAL_ 0 0 0 REV__ENST00000478193.5_1_10:73975797-73990192:+|nuORF REV__ENST00000478193.5_1_10:73975797-73990192:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 624.3734741210938 2 624.372207 1246.72986 0.50555 0.00031565 0.13834 8.6379E-05 0.64389 0.00040203 624.3720145575638 91.728 0.6029 95.129 94.81 95.413 3.401 158 89 2 0 0 0 0.56333 1 22962 22962 1.4819 1.4819 1 2059400 + 28759 22550 18182 18193 33296 33296 0.11636484033533634 NLRPHWKIAL 10 Unmodified _NLRPHWKIAL_ 0 0 0 REV__ENST00000478193.5_1_10:73975797-73990192:+|nuORF REV__ENST00000478193.5_1_10:73975797-73990192:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 624.3716430664062 2 624.372207 1246.72986 0.49402 0.00030845 -0.38797 -0.00024224 0.10605 6.6212E-05 624.3717814378824 91.311 0.73558 95.066 94.694 95.43 3.7554 210 108 2 0 0 0 0.56333 1 21822 21822 1.4819 0.15237 1 13908000 + 28760 22550 18182 18193 33297 33297 0.11636484033533634 NLRRISAN 8 Unmodified _NLRRISAN_ 0 0 0 ENST00000539652.1_1_12:66522892-66539669:-|nuORF ENST00000539652.1_1_12:66522892-66539669:-|nuORF ENST00000539652.1_1_12:66522892-66539669:-|nuORF MSMS UPN47_class_I_Rep_1 2 472.2886657714844 2 472.275232 942.535912 NaN NaN NaN NaN NaN NaN NaN 108.1 1 111.74 111.24 112.24 3.6355 0 0 0 0.40157 1 26524 26524 7.2892 0 1 28761 7350 18183 18194 33298 33298 0.06234527597428041 NLSEDAESFE 10 Unmodified _NLSEDAESFE_ 0 0 0 REV__L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|12|1|sense REV__L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.73876953125 2 570.738208 1139.46186 0.39047 0.00022286 0.24013 0.00013705 0.6306 0.00035991 570.7383751826113 59.265 0.58451 62.682 62.414 62.999 3.4171 68 41 2 0 0 0 0.56333 1 13717 13717 1.4819 0 1 111640 + 28762 28757 18184 18195 33299 33299 -0.10228949866063886 NLSHLLFNNTS 11 Unmodified _NLSHLLFNNTS_ 0 0 0 L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|2|1|sense L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|2|1|sense L1PA16_dup1701|chr2:179241956-179243916:+|1.3580908134851146|0.0150817843166054|6.49|147.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 630.8245849609375 2 630.322576 1258.6306 0.40375 0.0002545 -0.83544 -0.0005266 -0.43169 -0.0002721 630.8233445096573 49.353 0.2319 52.699 52.544 52.775 3.3465 17 15 2 0 0 0 0.66277 1 10742 10742 2.086 0 1 49587 28763 14059 18185 18196 33300 33300 0.011629965581050783 NLSKHKKKH 9 Unmodified _NLSKHKKKH_ 0 0 0 ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 MSMS UPN47_class_I_Rep_3 4 560.3402709960938 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 94.968 1 98.375 97.875 98.875 3.4068 0 0 0 0.4007 1 23620 23620 0.52476 0 1 28764 3235 18186 18197 33301 33301 0.11267337965318802 NLSPFPRP 8 Unmodified _NLSPFPRP_ 0 0 0 REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 464.2560729980469 2 464.255977 926.497401 0.18356 8.5218E-05 -2.5197 -0.0011698 -2.3361 -0.0010845 464.25507763091014 74.44 0.48536 78.03 77.732 78.217 3.59 84 53 2 0 0 0 0.82752 1 17549 17549 7.9102 0 1 127580 + 28765 22346 18187 18198 33302 33302 0.031212219629082938 NLSPFPRP 8 Unmodified _NLSPFPRP_ 0 0 0 REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 464.255977 926.497401 0.0048006 2.2287E-06 -2.3646 -0.0010978 -2.3598 -0.0010955 464.2549174145203 74.706 0.037155 78.019 78.005 78.042 3.3127 0.068187 0.00064168 NaN 7.9102 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 29667 + 28766 22346 18187 18198 0.031212219629082938 NLSPFPRP 8 Unmodified _NLSPFPRP_ 0 0 0 REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 464.255977 926.497401 -0.075067 -3.485E-05 -4.0347 -0.0018731 -4.1097 -0.001908 464.2541942728752 74.492 0.049889 77.738 77.706 77.756 3.2464 -0.21226 -0.00090903 NaN 7.9102 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 23809 + 28767 22346 18187 18198 0.031212219629082938 NLSPFPRP 8 Unmodified _NLSPFPRP_ 0 0 0 REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 464.255977 926.497401 0.094984 4.4097E-05 -3.4835 -0.0016172 -3.3885 -0.0015731 464.25437035657416 74.525 0.090622 78.015 77.98 78.071 3.49 0.06438 -0.00039723 NaN 7.9102 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 95547 + 28768 22346 18187 18198 0.031212219629082938 NLSPFPRP 8 Unmodified _NLSPFPRP_ 0 0 0 REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF REV__ENST00000444180.3_1_10:88784431-88784476:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 464.255977 926.497401 0.18356 8.5218E-05 -2.5197 -0.0011698 -2.3361 -0.0010845 464.25507763091014 74.44 0.48536 78.03 77.732 78.217 3.59 0.079696 0.00049767 NaN 7.9102 84 53 2 NaN NaN NaN NaN 0 NaN NaN 0 127580 + 28769 22346 18187 18198 0.031212219629082938 NLSSKLKIG 9 Unmodified _NLSSKLKIG_ 0 0 0 L1MB7_dup22571|chr22:29925941-29927533:-|1.288866666624365|0.0081285143890451|7.31|151.0|9|1|sense L1MB7_dup22571|chr22:29925941-29927533:-|1.288866666624365|0.0081285143890451|7.31|151.0|9|1|sense L1MB7_dup22571|chr22:29925941-29927533:-|1.288866666624365|0.0081285143890451|7.31|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 480.29730224609375 2 480.297842 958.581131 NaN NaN NaN NaN NaN NaN NaN 14.093 1 17.463 16.963 17.963 3.3697 0 0 0 0.3967 1 469 469 1.4819 0 1 28770 10807 18188 18199 33303 33303 0.10018333339951369 NLTLLIAAY 9 Unmodified _NLTLLIAAY_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|192|3|sense;Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|114|2|sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|192|3|sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|192|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955017089844 2 496.294768 990.574983 0.26967 0.00013384 1.5097 0.00074926 1.7794 0.0008831 496.29534750101226 46.7 0.088318 46.7 46.664 46.752 0 13 6 5 0 0 0 0.46434 1 9594 9594 4.3292 0 1 4299000 28771 7976 18189 18200 33304 33304 0.07931815108429419 NLTQILLD 8 Unmodified _NLTQILLD_ 0 0 0 REV__L1MEg_dup14435|chr22:45143584-45144428:+|1.2531448296071406|0.2286755022292802|2.45|151.0|34|1|anti-sense REV__L1MEg_dup14435|chr22:45143584-45144428:+|1.2531448296071406|0.2286755022292802|2.45|151.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 465.2704162597656 2 465.26875 928.522947 -0.012606 -5.8653E-06 0.19939 9.2768E-05 0.18678 8.6903E-05 465.27037302146215 99.894 0.56068 103.34 103.11 103.67 3.4483 180 71 4 0 0 0 0.82752 1 24713 24713 2.5775 0 1 1143700 + 28772 28729 18190 18201 33305 33305 0.05582651694669494 NLTSFQFGGFL 11 Unmodified _NLTSFQFGGFL_ 0 0 0 L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 615.8109130859375 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.2836 2 15421 15421;15500 21.537 2.175 1 904810 28773 10302 18191 18202 33306;33307 33306 0.0024539716048366245 NLTSFQFGGFL 11 Unmodified _NLTSFQFGGFL_ 0 0 0 L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.312744140625 2 615.811313 1229.60807 0.50558 0.00031134 0.38705 0.00023835 0.89263 0.00054969 615.8115992791977 67.314 0.94589 70.811 70.409 71.354 3.4964 187 74 3 0 0 0 0.2836 4 15393 15393;15508;15520;15554 21.537 0 1 1019000 28774 10302 18191 18202 33308;33309;33310;33311 33308 0.0024539716048366245 NLTSFQFGGFL 11 Unmodified _NLTSFQFGGFL_ 0 0 0 L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|119|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 615.8114624023438 2 615.811313 1229.60807 0.62552 0.0003852 0.26056 0.00016046 0.88608 0.00054566 615.8115476347172 67.293 0.96441 70.801 70.328 71.292 3.5077 191 78 3 0 0 0 0.2836 1 15269 15269 21.537 0 1 835100 28775 10302 18191 18202 33312 33312 0.0024539716048366245 NLVCRLLRL 9 Unmodified _NLVCRLLRL_ 0 0 0 L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|301|2|anti-sense L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|301|2|anti-sense L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|301|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.3431396484375 2 550.342061 1098.66957 NaN NaN NaN NaN NaN NaN NaN 62.941 1 62.941 62.441 63.441 0 0 0 0 0.39518 1 14104 14104 1.8442 0.19162 1 28776 14382 18192 18203 33313 33313 0.12418050378755652 NLVFLIIF 8 Unmodified _NLVFLIIF_ 0 0 0 REV__L1MC4_dup21019|chr16:56827295-56827710:+|1.011264615351425|0.1538033849887951|2.72|151.0|18|1|anti-sense REV__L1MC4_dup21019|chr16:56827295-56827710:+|1.011264615351425|0.1538033849887951|2.72|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 489.80584716796875 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 72.659 1 76.196 75.696 76.696 3.5373 0 0 0 0.40746 1 16950 16950 0.69038 0 1 + 28777 26869 18193 18204 33314 33314 0.10529610839057568 NLVHKSVLLCL 11 Unmodified _NLVHKSVLLCL_ 0 0 0 REV__Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|52|3|anti-sense REV__Tigger9a_dup184|chr3:4358420-4359118:+|1.009167804325468|0.0165922224508266|5.93|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_1 5 619.8695068359375 2 619.868108 1237.72166 NaN NaN NaN NaN NaN NaN NaN 88.385 1 92.008 91.508 92.508 3.6229 0 0 0 0.38417 1 21206 21206 1.1933 0.735 1 + 28778 32813 18194 18205 33315 33315 0.11231169001894159 NLVHLDVFPIW 11 Unmodified _NLVHLDVFPIW_ 0 0 0 REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|281|2|anti-sense REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|281|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 450.91387939453125 3 451.583562 1351.72886 -0.81264 -0.00036698 -1.2685 -0.00057281 -2.0811 -0.00093979 451.5827955863468 32.719 0.17664 36.006 35.948 36.125 3.2867 19 13 3 0 0 0 22.551 1 5758 5758 1.2148 0.51716 1 39380 + 28779 30068 18195 18206 33316 33316 0.06706224873937572 NLVICWFIP 9 Unmodified _NLVICWFIP_ 0 0 0 REV__L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|89|1|anti-sense REV__L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|89|1|anti-sense MSMS UPN48_class_I_Rep_2 6 552.7993774414062 2 552.799163 1103.58377 NaN NaN NaN NaN NaN NaN NaN 63.312 1 66.786 66.286 67.286 3.4738 0 0 0 0.38478 1 14223 14223 4.3292 0.38484 1 + 28780 25229 18196 18207 33317 33317 0.03612465473247539 NLVICWFIP 9 Unmodified _NLVICWFIP_ 0 0 0 REV__L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|89|1|anti-sense REV__L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|89|1|anti-sense MSMS UPN48_class_I_Rep_3 7 552.7996826171875 2 552.799163 1103.58377 NaN NaN NaN NaN NaN NaN NaN 63.236 1 66.745 66.245 67.245 3.5091 0 0 0 0.36505 1 14121 14121 7.2892 2.96 1 + 28781 25229 18196 18207 33318 33318 0.03612465473247539 NLVILRKIA 9 Unmodified _NLVILRKIA_ 0 0 0 HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|17|1|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|17|1|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|17|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 520.3530883789062 2 520.352951 1038.69135 0.39115 0.00020353 0.36083 0.00018776 0.75198 0.00039129 520.3529887430533 108.22 0.60649 111.9 111.67 112.27 3.6813 176 63 4 0 0 0 0.50088 1 25620 25620 0.52476 0 1 32838000 28782 8265 18197 18208 33319 33319 0.1735517839899785 NLVKLQYTK 9 Unmodified _NLVKLQYTK_ 0 0 0 L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|48|3|sense L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|48|3|sense L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|48|3|sense MSMS UPN47_class_I_Rep_2 3 553.8299560546875 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.649 1 83.004 82.504 83.504 3.3554 0 0 0 0.39598 1 19835 19835 1.6526 0 1 28783 10066 18198 18209 33320 33320 0.10094577919812764 NLVKTSRLD 9 Unmodified _NLVKTSRLD_ 0 0 0 REV__L1MB8_dup10234|chr10:70415188-70416298:+|2.7696211769937573|0.4597470669837193|2.59|151.0|66|2|anti-sense REV__L1MB8_dup10234|chr10:70415188-70416298:+|2.7696211769937573|0.4597470669837193|2.59|151.0|66|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3045654296875 2 523.303655 1044.59276 0.32899 0.00017216 -0.069892 -3.6575E-05 0.2591 0.00013559 523.3034783170407 85.394 0.1636 85.394 85.281 85.444 0 21 14 2 0 0 0 0.42249 1 20363 20363 6.7232 1.4925 1 173560 + 28784 26329 18199 18210 33321 33321 0.07224530363282611 NLVLEKTG 8 Unmodified _NLVLEKTG_ 0 0 0 L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|82|3|sense L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|82|3|sense L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|82|3|sense MSMS UPN47_class_I_Rep_1 2 437.2579650878906 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 90.879 1 94.569 94.069 95.069 3.6899 0 0 0 0.40643 1 22694 22694 2.0598 0 1 28785 8573 18200 18211 33322 33322 0.055383825232070194 NLVMKTIR 8 Unmodified _NLVMKTIR_ 0 0 0 REV__Tigger4_dup394|chr4:53979207-53980144:-|1.1491537652566357|0.4950639177977093|1.21|151.0|16|2|sense REV__Tigger4_dup394|chr4:53979207-53980144:-|1.1491537652566357|0.4950639177977093|1.21|151.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 487.7945861816406 2 487.794412 973.574271 NaN NaN NaN NaN NaN NaN NaN 82.306 1 86.012 85.512 86.512 3.7066 0 0 0 0.40746 1 19503 19503 0.69038 0 1 + 28786 32778 18201 18212 33323 33323 0.08642697187747217 NLVPCKFRI 9 Unmodified _NLVPCKFRI_ 0 0 0 REV__L1M4c_dup1443|chr7:99020488-99022081:+|2.87939544213297|0.1140937209118722|4.66|151.0|40|3|sense REV__L1M4c_dup1443|chr7:99020488-99022081:+|2.87939544213297|0.1140937209118722|4.66|151.0|40|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.3169555664062 2 545.315512 1088.61647 0.38185 0.00020823 2.1163 0.0011541 2.4982 0.0013623 545.3166112662868 87.762 0.058907 87.762 87.725 87.784 0 8 5 2 0 0 0 0.48846 1 21054 21054 1.8442 0.6509 1 112060 + 28787 24579 18202 18213 33324 33324 0.07570672596102668 NLVPFKTR 8 Unmodified _NLVPFKTR_ 0 0 0 REV__ENST00000438412.5_1_6:30262511-30262622:-|nuORF REV__ENST00000438412.5_1_6:30262511-30262622:-|nuORF MSMS UPN46_class_I_Rep_3 1 487.79083251953125 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 81.45 1 81.45 80.95 81.95 0 0 0 0 0.40643 1 19236 19236 2.0598 0.21551 1 + 28788 22317 18203 18214 33325 33325 0.08305770405388557 NLVQPLWKAV 10 Unmodified _NLVQPLWKAV_ 0 0 0 L1PREC2_dup2070|chr4:153511008-153511623:+|1.16946577926104|0.0066318980380969|7.46|151.0|19|3|sense;L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|45|2|sense L1PREC2_dup2070|chr4:153511008-153511623:+|1.16946577926104|0.0066318980380969|7.46|151.0|19|3|sense L1PREC2_dup2070|chr4:153511008-153511623:+|1.16946577926104|0.0066318980380969|7.46|151.0|19|3|sense MSMS UPN48_class_I_Rep_1 5 584.3458862304688 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 101.62 1 105.23 104.73 105.73 3.612 0 0 0 0.53105 1 24526 24526 1.4819 0.15237 1 28789 13939 18204 18215 33326 33326 0.10450570673742732 NLVRARYFVIF 11 Unmodified _NLVRARYFVIF_ 0 0 0 REV__L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|103|3|anti-sense REV__L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|103|3|anti-sense MSMS UPN46_class_I_Rep_3 1 466.6079406738281 3 466.60659 1396.79794 NaN NaN NaN NaN NaN NaN NaN 97.88 1 97.88 97.38 98.38 0 0 0 0 0.38417 1 23827 23827 0.50596 0 1 + 28790 27311 18205 18216 33327 33327 0.11541308893492896 NLVRVSNSI 9 Unmodified _NLVRVSNSI_ 0 0 0 LTR41_dup188|chr2:108635951-108636575:-|1.1112800411118051|0.0203797019720241|5.77|151.0|17|3|sense LTR41_dup188|chr2:108635951-108636575:-|1.1112800411118051|0.0203797019720241|5.77|151.0|17|3|sense LTR41_dup188|chr2:108635951-108636575:-|1.1112800411118051|0.0203797019720241|5.77|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 501.2906799316406 2 501.290548 1000.56654 0.30399 0.00015239 0.12854 6.4434E-05 0.43253 0.00021682 501.2905033323004 76.993 1.5422 80.594 79.952 81.494 3.6016 275 150 2 0 0 0 0.47197 1 18293 18293 3.5965 0 1 454810 28791 15638 18206 18217 33328 33328 0.06628261191815454 NLVSVSSILFV 11 Unmodified _NLVSVSSILFV_ 0 0 0 REV__L1ME1_dup28294|chr18:26022412-26023355:+|1.1865320543414275|0.1458640705166071|3.02|150.0|58|3|anti-sense REV__L1ME1_dup28294|chr18:26022412-26023355:+|1.1865320543414275|0.1458640705166071|3.02|150.0|58|3|anti-sense MSMS UPN47_class_I_Rep_3 4 589.3436889648438 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 84.846 1 88.207 87.707 88.707 3.3615 0 0 0 0.38417 1 21292 21292 4.897 0.95262 1 + 28792 27727 18207 18218 33329 33329 0.09415427371436635 NLVVDTLTI 9 Unmodified _NLVVDTLTI_ 0 0 0 REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|67|3|sense REV__L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|67|3|sense MSMS UPN48_class_I_Rep_3 7 494.28985595703125 2 494.289682 986.564812 NaN NaN NaN NaN NaN NaN NaN 57.829 1 61.361 60.861 61.861 3.5317 0 0 0 0.38916 1 12476 12476 3.2813 0 1 + 28793 27506 18208 18219 33330 33330 0.07099207383191697 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 457.2641906738281 2 457.264333 912.514114 0.17738 8.1107E-05 0.1403 6.4156E-05 0.31768 0.00014526 457.26418404281094 76.332 1.2487 76.332 75.776 77.025 0 199 124 3 0 0 0 0.82752 1 17860 17860 4.756 0 1 304550 28794 356 18209 18220 33331 33331 0.05435722848869773 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2641906738281 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.82752 3 17737 17737;18054;18136 4.756 0 1 270870 28795 356 18209 18220 33332;33333;33334 33332 0.05435722848869773 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 457.26422119140625 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.82752 3 17765 17765;18104;18141 4.756 0 1 317760 28796 356 18209 18220 33335;33336;33337 33335 0.05435722848869773 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MSMS UPN47_class_I_Rep_2 3 457.26422119140625 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 74.43 1 77.743 77.243 78.243 3.3127 0 0 0 0.4044 1 18341 18341 4.756 0 1 28797 356 18209 18220 33338 33338 0.05435722848869773 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.264404296875 2 457.264333 912.514114 -0.15313 -7.0019E-05 0.21208 9.6978E-05 0.058957 2.6959E-05 457.2643294104242 73.093 1.9641 76.32 75.19 77.155 3.2271 308 175 3 0 0 0 0.82752 4 17828 17828;17902;17940;18253 4.756 0 1 325030 28798 356 18209 18220 33339;33340;33341;33342 33339 0.05435722848869773 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.26434326171875 2 457.264333 912.514114 0.073621 3.3664E-05 0.075283 3.4424E-05 0.1489 6.8088E-05 457.264245092214 72.821 1.6651 76.294 75.47 77.135 3.4732 273 145 3 0 0 0 0.82752 2 17029 17029;17304 4.756 0 1 285570 28799 356 18209 18220 33343;33344 33343 0.05435722848869773 NLVVQGRQ 8 Unmodified _NLVVQGRQ_ 0 0 0 AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense AluSz_dup61785|chr11:17128305-17128538:-|1.0045716527219382|0.1927570273194042|2.38|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.2643127441406 2 457.264333 912.514114 0.16319 7.4623E-05 0.010421 4.765E-06 0.17361 7.9388E-05 457.2641985747419 72.45 1.6171 76.015 75.426 77.043 3.5645 245 162 2 0 0 0 0.82752 6 16872 16872;16985;17060;17099;17136;17175 4.756 0 1 245260 28800 356 18209 18220 33345;33346;33347;33348;33349;33350 33345 0.05435722848869773 NLVVSKVALFR 11 Unmodified _NLVVSKVALFR_ 0 0 0 ENST00000567385.5_1_16:48244807-48265838:-|nuORF ENST00000567385.5_1_16:48244807-48265838:-|nuORF ENST00000567385.5_1_16:48244807-48265838:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 623.3869018554688 2 623.387522 1244.76049 0.55222 0.00034425 0.18349 0.00011439 0.73571 0.00045863 623.8893069134913 109.18 0.44611 112.78 112.61 113.05 3.6046 68 45 2 0 0 0 0.52578 1 26934 26934 7.1017 0 1 3156400 28801 7496 18210 18221 33351 33351 0.14790217627864877 NLVVSKVALFR 11 Unmodified _NLVVSKVALFR_ 0 0 0 ENST00000567385.5_1_16:48244807-48265838:-|nuORF ENST00000567385.5_1_16:48244807-48265838:-|nuORF ENST00000567385.5_1_16:48244807-48265838:-|nuORF MSMS UPN47_class_I_Rep_3 4 623.3872680664062 2 623.387522 1244.76049 NaN NaN NaN NaN NaN NaN NaN 109.29 1 112.82 112.32 113.32 3.5347 0 0 0 0.37931 1 26844 26844 7.1017 1.3699 1 28802 7496 18210 18221 33352 33352 0.14790217627864877 NLVYVKVSYRL 11 Unmodified _NLVYVKVSYRL_ 0 0 0 REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MSMS UPN46_class_I_Rep_3 1 451.9326171875 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 93.799 1 93.799 93.299 94.299 0 0 0 0 0.38417 1 22741 22741 0.40827 0.24894 1 + 28803 21288 18211 18222 33353 33353 0.1193418293673858 NLVYVKVSYRL 11 Unmodified _NLVYVKVSYRL_ 0 0 0 REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MSMS UPN47_class_I_Rep_3 4 451.93231201171875 3 451.934484 1352.78162 NaN NaN NaN NaN NaN NaN NaN 92.33 1 95.733 95.233 96.233 3.4034 0 0 0 0.38417 1 23056 23056 1.1098 0.33322 1 + 28804 21288 18211 18222 33354 33354 0.1193418293673858 NLWQSRLFL 9 Unmodified _NLWQSRLFL_ 0 0 0 MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|64|2|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|64|2|anti-sense MSTD-int_dup577|chr12:11190756-11192003:-|1.1840998597196897|0.0213090653203392|5.8|150.0|64|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 588.3366088867188 2 588.82984 1175.64513 0.57 0.00033564 -1.6451 -0.00096868 -1.0751 -0.00063304 588.8286860165592 68.781 0.44243 72.29 72.125 72.567 3.5094 52 31 2 0 0 0 0.118 1 15836 15836 10.074 0 1 160880 28805 16609 18212 18223 33355 33355 0.0643311349688247 NLYANVYNSF 10 Unmodified _NLYANVYNSF_ 0 0 0 L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|16|1|sense L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|16|1|sense L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 602.7807006835938 2 602.785296 1203.55604 0.46711 0.00028157 -0.29978 -0.0001807 0.16733 0.00010086 602.7849153538335 68.617 0.47372 72.069 71.807 72.28 3.4517 62 40 2 0 0 0 0.55148 1 15913 15913 5.2969 0.39987 1 126670 28806 11957 18213 18224 33356 33356 -0.037597662533016774 NLYHDFRLF 9 Unmodified _NLYHDFRLF_ 0 0 0 REV__ENST00000538548.5_1_12:132198725-132271134:+|nuORF REV__ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 409.1105651855469 3 408.876857 1223.60874 0.00338 1.382E-06 2.7408 0.0011206 2.7442 0.001122 408.87799298848574 36.44 0.094723 40.107 40.062 40.157 3.6667 14 9 2 0 0 0 0.12447 1 6036 6036 2.4985 0.59211 1 51735 + 28807 17728 18214 18225 33357 33357 0.005882366001742412 NLYHDFRLF 9 Unmodified _NLYHDFRLF_ 0 0 0 REV__ENST00000538548.5_1_12:132198725-132271134:+|nuORF REV__ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 408.876857 1223.60874 -0.10237 -4.1856E-05 2.4024 0.00098228 2.3 0.00094043 408.87776859662125 36.619 0.19469 40.126 40 40.195 3.507 0.026245 -0.00010711 NaN 2.4985 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 61756 + 28808 17728 18214 18225 0.005882366001742412 NLYHDFRLF 9 Unmodified _NLYHDFRLF_ 0 0 0 REV__ENST00000538548.5_1_12:132198725-132271134:+|nuORF REV__ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 408.876857 1223.60874 0.05409 2.2116E-05 2.5274 0.0010334 2.5814 0.0010555 408.87792679459363 36.378 0.13713 40.066 40.01 40.147 3.6877 -0.033756 4.617E-05 NaN 2.4985 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 88064 + 28809 17728 18214 18225 0.005882366001742412 NLYKIWKLKIK 11 Unmodified _NLYKIWKLKIK_ 0 0 0 REV__L1M2_dup3642|chr6:127354694-127355661:+|1.0402686597840758|0.1511839489819282|2.78|151.0|9|1|sense REV__L1M2_dup3642|chr6:127354694-127355661:+|1.0402686597840758|0.1511839489819282|2.78|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 482.97943115234375 3 482.978024 1445.91224 NaN NaN NaN NaN NaN NaN NaN 34.945 1 38.459 37.959 38.959 3.5144 0 0 0 0.38417 1 5654 5654 0.45452 0.35968 1 + 28810 24200 18215 18226 33358 33358 0.207121986555876 NLYKTDANLI 10 Unmodified _NLYKTDANLI_ 0 0 0 L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 582.8165893554688 2 582.816596 1163.61864 0.45595 0.00026573 0.020641 1.203E-05 0.47659 0.00027776 582.8165842548522 68.826 0.2157 72.281 72.124 72.339 3.4548 36 16 3 0 0 0 0.38974 2 15934 15895;15934 20.415 0 1 487330 28811 8974 18216 18227 33359;33360 33360 0.04337379814887754 NLYKTDANLI 10 Unmodified _NLYKTDANLI_ 0 0 0 L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.8167724609375 2 582.816596 1163.61864 0.48289 0.00028143 0.063372 3.6935E-05 0.54626 0.00031837 582.8166383921211 68.973 0.48174 72.495 72.347 72.829 3.5216 58 35 3 0 0 0 0.38974 1 15932 15932 20.415 4.2654 1 279040 28812 8974 18216 18227 33361 33361 0.04337379814887754 NLYKTDANLI 10 Unmodified _NLYKTDANLI_ 0 0 0 L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_3 7 582.816650390625 2 582.816596 1163.61864 NaN NaN NaN NaN NaN NaN NaN 68.415 1 71.925 71.425 72.425 3.5094 0 0 0 0.53105 1 15686 15686 11.495 0 1 28813 8974 18216 18227 33362 33362 0.04337379814887754 NLYKTDANLI 10 Unmodified _NLYKTDANLI_ 0 0 0 L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|46|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 582.816596 1163.61864 0.48718 0.00028394 -0.49802 -0.00029026 -0.010844 -6.3202E-06 582.8162229197117 68.405 0.051521 71.914 71.901 71.953 3.5083 -0.18367 -0.00059486 NaN 20.415 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66335 28814 8974 18216 18227 0.04337379814887754 NLYLAPYHK 9 Unmodified _NLYLAPYHK_ 0 0 0 ENST00000538790.1_1_12:122506317-122506485:+|nuORF ENST00000538790.1_1_12:122506317-122506485:+|nuORF ENST00000538790.1_1_12:122506317-122506485:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 559.8031616210938 2 559.803291 1117.59203 0.44956 0.00025166 -0.85374 -0.00047793 -0.40418 -0.00022626 559.802532405469 39.057 0.52405 42.787 42.535 43.059 3.7297 55 48 2 0 0 0 0.46869 2 6873 6873;6936 3.9444 0 1 85054 28815 7342 18217 18228 33363;33364 33363 0.037937357142027395 NLYMVGNYQV 10 Unmodified _NLYMVGNYQV_ 0 0 0 L1ME4a_dup8800|chr4:37680087-37680591:+|2.3050081106929263|0.0135289119841685|7.41|151.0|34|2|anti-sense L1ME4a_dup8800|chr4:37680087-37680591:+|2.3050081106929263|0.0135289119841685|7.41|151.0|34|2|anti-sense L1ME4a_dup8800|chr4:37680087-37680591:+|2.3050081106929263|0.0135289119841685|7.41|151.0|34|2|anti-sense MSMS UPN47_class_I_Rep_1 2 600.7901000976562 2 600.789524 1199.56449 NaN NaN NaN NaN NaN NaN NaN 66.385 1 69.743 69.243 70.243 3.3576 0 0 0 0.53105 1 15899 15899 1.4819 0 1 28816 12877 18218 18229 33365 33365 -0.027305356083161314 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MSMS UPN46_class_I_Rep_3 1 540.7963256835938 2 540.808042 1079.60153 NaN NaN NaN NaN NaN NaN NaN 63.709 1 63.709 63.209 64.209 0 0 0 0 0.13613 1 14316 14316 20.415 4.5674 1 28817 3081 18219 18230 33366 33366 0.06491503999745873 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MSMS UPN47_class_I_Rep_1 2 540.80810546875 2 540.808042 1079.60153 0.40701 0.00022012 -0.067968 -3.6758E-05 0.33904 0.00018336 540.8082548388633 57.802 0.62006 61.239 61.046 61.666 3.437 55 38 2 0 0 0 0.20317 1 13301 13301 20.415 9.5906 1 119940 28818 3081 18219 18230 33367 33367 0.06491503999745873 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MSMS UPN47_class_I_Rep_2 3 540.8084716796875 2 540.808042 1079.60153 0.47608 0.00025747 -0.31586 -0.00017082 0.16023 8.6651E-05 540.807962599665 58.108 0.67587 61.399 61.137 61.813 3.2912 56 41 2 0 0 0 0.33908 1 13487 13487 11.495 4.7715 1 61475 28819 3081 18219 18230 33368 33368 0.06491503999745873 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MATCH UPN47_class_I_Rep_3 4 2 540.808042 1079.60153 0.31868 0.00017234 0.9718 0.00052556 1.2905 0.0006979 540.8087491795812 58.478 0.058266 61.643 61.611 61.669 3.1658 0.21648 0.0012118 NaN 20.415 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 52096 28820 3081 18219 18230 0.06491503999745873 NLYSFEDYI 9 Unmodified _NLYSFEDYI_ 0 0 0 ENST00000451892.1_1_1:240307039-240307453:-|nuORF ENST00000451892.1_1_1:240307039-240307453:-|nuORF ENST00000451892.1_1_1:240307039-240307453:-|nuORF MSMS UPN47_class_I_Rep_3 4 582.2847900390625 2 582.266404 1162.51826 NaN NaN NaN NaN NaN NaN NaN 77.435 1 80.704 80.204 81.204 3.269 0 0 0 0.35339 1 19283 19283 7.9102 0 1 28821 6815 18220 18231 33369 33369 -0.05650277238760282 NLYTGQIDIK 10 Unmodified _NLYTGQIDIK_ 0 0 0 REV__L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|112|2|sense REV__L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|112|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 582.8167724609375 2 582.816596 1163.61864 0.5553 0.00032364 -0.0066637 -3.8837E-06 0.54863 0.00031975 582.8164938857387 68.867 0.36781 72.376 72.254 72.622 3.5094 41 25 2 0 0 0 0.84575 1 15820 15820 4.1895 0.59301 1 236310 + 28822 30316 18221 18232 33370 33370 0.04337379814887754 NLYTNVQYY 9 Unmodified _NLYTNVQYY_ 0 0 0 L1MB8_dup261|chr1:43776022-43776716:-|1.5142793248421034|0.0080974045431092|7.55|150.0|3|1|sense L1MB8_dup261|chr1:43776022-43776716:-|1.5142793248421034|0.0080974045431092|7.55|150.0|3|1|sense L1MB8_dup261|chr1:43776022-43776716:-|1.5142793248421034|0.0080974045431092|7.55|150.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 589.2817993164062 2 589.279846 1176.54514 NaN NaN NaN NaN NaN NaN NaN 39.974 1 43.212 42.712 43.712 3.2372 0 0 0 0.39518 1 7958 7958 1.8442 0.19162 1 28823 10982 18222 18233 33371 33371 -0.03607168627581814 NLYVKLTDE 9 Unmodified _NLYVKLTDE_ 0 0 0 REV__nc|ENSG00000163359|P12111-4|COL6A3 REV__nc|ENSG00000163359|P12111-4|COL6A3 MULTI-SECPEP UPN47_class_I_Rep_3 4 547.3101806640625 2 547.790047 1093.56554 0.33424 0.00018309 -0.8225 -0.00045056 -0.48826 -0.00026746 548.2909778792944 58.282 1.1078 61.448 60.727 61.835 3.1658 98 79 2 0 0 0 0.12462 1 13396 13396 1.8442 0 1 95497 + 28824 17464 18223 18234 33372 33372 0.022500020322468117 NLYVKLTDE 9 Unmodified _NLYVKLTDE_ 0 0 0 REV__nc|ENSG00000163359|P12111-4|COL6A3 REV__nc|ENSG00000163359|P12111-4|COL6A3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 547.790047 1093.56554 0.49755 0.00027255 -0.86586 -0.00047431 -0.36831 -0.00020176 548.2909853545387 58.137 0.47992 61.428 61.057 61.537 3.2912 -0.010005 -3.5344E-05 NaN 1.8442 47 34 2 NaN NaN NaN NaN 0 NaN NaN 0 177980 + 28825 17464 18223 18234 0.022500020322468117 NMCLFLGVAH 10 Unmodified _NMCLFLGVAH_ 0 0 0 Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7693481445312 2 552.77008 1103.52561 0.34574 0.00019112 -0.65808 -0.00036377 -0.31234 -0.00017265 552.7696983100662 53.619 0.58058 57.147 56.927 57.507 3.5278 67 37 2 0 0 0 0.56078 1 12101 12101 3.2813 0.97858 1 153090 28826 8465 18224 18235 33373 33373 -0.022015394436948554 NMCLFLGVAH 10 Unmodified _NMCLFLGVAH_ 0 0 0 Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.7687377929688 2 552.77008 1103.52561 0.51003 0.00028193 -0.99977 -0.00055264 -0.48974 -0.00027071 552.769579247153 54.032 0.74544 57.351 56.934 57.68 3.3187 74 45 2 0 0 0 0.56078 2 12092 12092;12212 3.2813 0.97858 1 115890 28827 8465 18224 18235 33374;33375 33374 -0.022015394436948554 NMCLFLGVAH 10 Unmodified _NMCLFLGVAH_ 0 0 0 Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense Kanga1a_dup311|chr6:13650960-13651258:+|1.1923985275240927|0.1469982634024179|3.02|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.7698364257812 2 552.77008 1103.52561 0.45924 0.00025385 -0.61912 -0.00034223 -0.15988 -8.8378E-05 552.769690970639 54.065 0.75234 57.251 56.928 57.68 3.1856 95 48 3 0 0 0 0.56078 2 12168 12168;12334 3.2813 0.97858 1 194420 28828 8465 18224 18235 33376;33377 33376 -0.022015394436948554 NMDGVGGHYSK 11 Unmodified _NMDGVGGHYSK_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|40|1|sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|40|1|sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|40|1|sense MSMS UPN47_class_I_Rep_1 2 582.7562866210938 2 582.758755 1163.50296 NaN NaN NaN NaN NaN NaN NaN 69.709 1 73.077 72.577 73.577 3.3678 0 0 0 0.38417 1 16905 16905 0.96228 0.2719 1 28829 13954 18225 18236 33378 33378 -0.07225467307625877 NMFILCFLL 9 Unmodified _NMFILCFLL_ 0 0 0 REV__MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|184|2|anti-sense REV__MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|184|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.2975463867188 2 557.295399 1112.57624 NaN NaN NaN NaN NaN NaN NaN 59.617 1 59.617 59.117 60.117 0 0 0 0 0.39326 1 13192 13192 2.3027 0 1 + 28830 31300 18226 18237 33379 33379 0.024459898813347536 NMFYTRLLR 9 Unmodified _NMFYTRLLR_ 0 0 0 REV__L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|189|1|anti-sense REV__L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|189|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 405.2218017578125 3 405.221859 1212.64375 -0.010941 -4.4336E-06 -0.033789 -1.3692E-05 -0.044731 -1.8126E-05 405.22177481321046 54.084 0.88722 54.084 53.679 54.566 0 167 93 2 0 0 0 0.12522 1 11808 11808 0.96228 0.26461 1 555510 + 28831 29047 18227 18238 33380 33380 0.045931561364795925 NMILILPNV 9 Unmodified _NMILILPNV_ 0 0 0 L1M5_dup48365|chr17:39291735-39292195:-|2.208005100611134|0.0369856602145261|5.9|151.0|22|2|anti-sense L1M5_dup48365|chr17:39291735-39292195:-|2.208005100611134|0.0369856602145261|5.9|151.0|22|2|anti-sense L1M5_dup48365|chr17:39291735-39292195:-|2.208005100611134|0.0369856602145261|5.9|151.0|22|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.8065795898438 2 513.804445 1025.59434 0.2485 0.00012768 1.2387 0.00063643 1.4872 0.00076411 513.8051707417521 88.132 0.24064 91.755 91.648 91.888 3.6229 36 23 2 0 0 0 0.48643 1 21153 21153 2.0598 0 1 193880 28832 9189 18228 18239 33381 33381 0.08256448127690419 NMKKKVKL 8 Unmodified _NMKKKVKL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MSMS UPN47_class_I_Rep_3 4 494.72406005859375 2 494.82043 987.626307 NaN NaN NaN NaN NaN NaN NaN 12.423 1 15.798 15.298 16.298 3.3753 0 0 0 0.40746 1 80 80 0.69038 0.69038 1 28833 3944 18229 18240 33382 33382 0.13199860601491764 NMKKVPII 8 Unmodified _NMKKVPII_ 0 0 0 REV__L1ME2_dup2981|chr3:142489379-142490061:-|2.15401508084704|0.0723817540088389|4.9|151.0|49|3|anti-sense REV__L1ME2_dup2981|chr3:142489379-142490061:-|2.15401508084704|0.0723817540088389|4.9|151.0|49|3|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7947082519531 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 24.474 1 28.04 27.54 28.54 3.5657 0 0 0 0.40746 1 2708 2708 0.69038 0 1 + 28834 27855 18230 18241 33383 33383 0.10008482818830089 NMKQNLFNY 9 Unmodified _NMKQNLFNY_ 0 0 0 REV__nc|ENSG00000108370|O75916-2|RGS9 REV__nc|ENSG00000108370|O75916-2|RGS9 MSMS UPN47_class_I_Rep_2 3 586.271240234375 2 586.281866 1170.54918 NaN NaN NaN NaN NaN NaN NaN 66.454 1 69.713 69.213 70.213 3.2588 0 0 0 0.38639 1 15967 15967 3.9444 1.6417 1 + 28835 18378 18231 18242 33384 33384 -0.029274024054984693 NMKRRDWP 8 Unmodified _NMKRRDWP_ 0 0 0 MLT2A1_dup2956|chr12:66340558-66341002:-|1.7338437279712604|0.1125882442773727|3.94|151.0|15|3|sense MLT2A1_dup2956|chr12:66340558-66341002:-|1.7338437279712604|0.1125882442773727|3.94|151.0|15|3|sense MLT2A1_dup2956|chr12:66340558-66341002:-|1.7338437279712604|0.1125882442773727|3.94|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 551.7799682617188 2 551.782367 1101.55018 NaN NaN NaN NaN NaN NaN NaN 14.5 1 14.5 14 15 0 0 0 0 0.40746 1 649 649 0.69038 0 1 28836 16497 18232 18243 33385 33385 0.003468567540494405 NMLFHCPLDS 10 Unmodified _NMLFHCPLDS_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|153|2|anti-sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|153|2|anti-sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|153|2|anti-sense MSMS UPN47_class_I_Rep_3 4 588.8189086914062 2 588.762452 1175.51035 NaN NaN NaN NaN NaN NaN NaN 48.745 1 51.98 51.48 52.48 3.2345 0 0 0 0.53105 1 10625 10625 1.4819 0 1 28837 9017 18233 18244 33386 33386 -0.07038451031530712 NMLSAKNSW 9 Unmodified _NMLSAKNSW_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MSMS UPN47_class_I_Rep_2 3 525.755126953125 2 525.755484 1049.49641 NaN NaN NaN NaN NaN NaN NaN 30.962 1 34.444 33.944 34.944 3.4821 0 0 0 0.39598 1 5178 5178 1.6526 0 1 + 28838 20766 18234 18245 33387 33387 -0.026353604683208687 NMPFYEYFN 9 Unmodified _NMPFYEYFN_ 0 0 0 REV__L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|35|3|anti-sense REV__L1M4_dup3044|chr3:11547345-11547849:-|1.2144452323095418|0.0899676781893451|3.75|151.0|35|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 612.1815185546875 2 612.755149 1223.49575 -0.008696 -5.3285E-06 0.41671 0.00025534 0.40801 0.00025001 612.7553769616568 35.407 0.08506 39.083 39.032 39.117 3.6762 5 4 2 0 0 0 0.12532 1 6497 6497 0.52476 0 1 25090 + 28839 24422 18235 18246 33388 33388 -0.10706199908008784 NMRKKCVF 8 Unmodified _NMRKKCVF_ 0 0 0 REV__L1MEg_dup9285|chr10:48355528-48356267:+|1.7277217094818464|0.1688462416257028|3.36|151.0|39|2|anti-sense REV__L1MEg_dup9285|chr10:48355528-48356267:+|1.7277217094818464|0.1688462416257028|3.36|151.0|39|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 513.2741088867188 2 513.27279 1024.53103 0.32135 0.00016494 2.5018 0.0012841 2.8232 0.0014491 513.2740021153429 91.906 0.16026 91.906 91.888 92.048 0 20 16 2 0 0 0 0.82752 1 22226 22226 5.7604 0.52976 1 174160 + 28840 28789 18236 18247 33389 33389 0.01974184138794044 NMVEDNPFF 9 Unmodified _NMVEDNPFF_ 0 0 0 REV__ENST00000460031.5_1_1:43220834-43232642:-|nuORF REV__ENST00000460031.5_1_1:43220834-43232642:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 556.7396850585938 2 556.739499 1111.46445 0.2411 0.00013423 -0.31268 -0.00017408 -0.071582 -3.9852E-05 556.7392880712076 33.575 0.45397 33.575 33.306 33.76 0 52 36 2 0 0 0 0.47493 1 5938 5938 3.2813 1.2216 1 69514 + 28841 18632 18237 18248 33390 33390 -0.0868277294212021 NMVKTHTGL 9 Unmodified _NMVKTHTGL_ 0 0 0 REV__nc|ENSG00000115415|P42224-2|STAT1 REV__nc|ENSG00000115415|P42224-2|STAT1 MSMS UPN47_class_I_Rep_3 4 500.76708984375 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 37.476 1 40.723 40.223 41.223 3.247 0 0 0 0.39598 1 7191 7191 1.6526 0 1 + 28842 18561 18238 18249 33391 33391 0.017372299113503686 NMVVLHLL 8 Unmodified _NMVVLHLL_ 0 0 0 REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 469.7496337890625 2 469.778231 937.541908 0.15439 7.2528E-05 1.2237 0.00057488 1.3781 0.00064741 469.77858927889207 84.084 0.30915 87.496 87.398 87.707 3.4116 50 39 2 0 0 0 0.72333 1 20965 20965 0.79363 0 1 63976 + 28843 26917 18239 18250 33392 33392 0.07063909784733369 NMVVLHLL 8 Unmodified _NMVVLHLL_ 0 0 0 REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 469.7792053222656 2 469.778231 937.541908 0.095145 4.4697E-05 1.0677 0.00050158 1.1628 0.00054628 469.7787368622543 84.068 0.09211 87.665 87.636 87.728 3.5973 11 9 2 0 0 0 0.82752 1 20131 20131 0.79363 0 1 94414 + 28844 26917 18239 18250 33393 33393 0.07063909784733369 NMVVLHLL 8 Unmodified _NMVVLHLL_ 0 0 0 REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 469.778231 937.541908 0.095145 4.4697E-05 1.0677 0.00050158 1.1628 0.00054628 469.7787368622543 84.068 0.09211 87.665 87.636 87.728 3.5973 0.058357 0.00015161 NaN 0.79363 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 94414 + 28845 26917 18239 18250 0.07063909784733369 NMVVLHLL 8 Unmodified _NMVVLHLL_ 0 0 0 REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense REV__L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|27|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 469.778231 937.541908 0.20309 9.5407E-05 1.32 0.00062013 1.5231 0.00071553 469.7787841248971 84.009 0.056931 87.69 87.659 87.716 3.6814 0.0829 0.00038871 NaN 0.79363 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 85526 + 28846 26917 18239 18250 0.07063909784733369 NMVYKKQS 8 Unmodified _NMVYKKQS_ 0 0 0 REV__Tigger2b_Pri_dup1837|chr16:89374791-89375298:+|1.2747634827316623|0.0170344118936291|6.23|150.0|13|3|sense REV__Tigger2b_Pri_dup1837|chr16:89374791-89375298:+|1.2747634827316623|0.0170344118936291|6.23|150.0|13|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.2598571777344 2 499.260402 996.506251 -0.16977 -8.4762E-05 0.07318 3.6536E-05 -0.096594 -4.8226E-05 499.2604691379319 28.115 0.79572 31.614 31.038 31.834 3.4986 97 64 2 0 0 0 0.82752 1 4158 4158 2.0598 0 1 68159 + 28847 32697 18240 18251 33394 33394 0.007858275370722367 NMWYHYEE 8 Unmodified _NMWYHYEE_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MSMS UPN47_class_I_Rep_2 3 586.2293090820312 2 586.229299 1170.44404 NaN NaN NaN NaN NaN NaN NaN 19.362 1 22.758 22.258 23.258 3.3963 0 0 0 0.40625 1 1810 1810 2.3027 1.3405 1 + 28848 17910 18241 18252 33395 33395 -0.13435943601916733 NMYKVDLEIK 10 Unmodified _NMYKVDLEIK_ 0 0 0 REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF MSMS UPN48_class_I_Rep_3 7 626.8340454101562 2 626.833931 1251.65331 NaN NaN NaN NaN NaN NaN NaN 51.116 1 54.727 54.227 55.227 3.6105 0 0 0 0.53105 1 10442 10442 1.3295 0.13619 1 + 28849 17535 18242 18253 33396 33396 0.03754879631333097 NNAKQQQTE 9 Unmodified _NNAKQQQTE_ 0 0 0 REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|47|2|sense REV__L1MA5_dup343|chr2:24581657-24584179:+|1.3204735678250172|0.0301261746075185|5.45|151.0|47|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 530.7540283203125 2 530.754527 1059.4945 -0.26905 -0.0001428 0.60964 0.00032357 0.34059 0.00018077 530.7544517053888 14.115 0.40099 14.115 13.997 14.398 0 75 46 3 0 0 0 0.47493 1 547 547 3.2813 0.28607 1 39862 + 28850 25384 18243 18254 33397 33397 -0.03286697952580653 NNCCRQDHR 9 Unmodified _NNCCRQDHR_ 0 0 0 L1MC4a_dup6732|chr11:11851487-11852557:-|1.2783448611050017|0.0171295474942518|6.22|151.0|22|2|sense L1MC4a_dup6732|chr11:11851487-11852557:-|1.2783448611050017|0.0171295474942518|6.22|151.0|22|2|sense L1MC4a_dup6732|chr11:11851487-11852557:-|1.2783448611050017|0.0171295474942518|6.22|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 573.6807861328125 2 573.237998 1144.46144 NaN NaN NaN NaN NaN NaN NaN 116.64 1 120.1 119.6 120.6 3.462 0 0 0 0.39428 1 28709 28709 2.0598 0 1 28851 11602 18244 18255 33398 33398 -0.10500926547933886 NNCHRRGLY 9 Unmodified _NNCHRRGLY_ 0 0 0 REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|113|3|anti-sense REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|113|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.777099609375 2 566.775074 1131.53559 0.20356 0.00011537 1.5398 0.00087272 1.7434 0.00098809 566.776620496602 44.865 1.1257 48.221 47.805 48.931 3.3556 153 69 3 0 0 0 0.40174 1 9383 9383 7.9102 1.187 1 219320 + 28852 24461 18245 18256 33399 33399 -0.024912153940931603 NNCKMCMEPE 10 Unmodified _NNCKMCMEPE_ 0 0 0 L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|51|2|sense L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|51|2|sense L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|51|2|sense MSMS UPN48_class_I_Rep_1 5 599.7205200195312 2 599.721612 1197.42867 NaN NaN NaN NaN NaN NaN NaN 111.94 1 115.57 115.07 116.07 3.6321 0 0 0 0.53105 1 27159 27159 1.4819 0.15237 1 28853 9792 18246 18257 33400 33400 -0.16214637777284224 NNCQDNSDEE 10 Unmodified _NNCQDNSDEE_ 0 0 0 ENST00000532490.1_1_11:36022639-36250762:+|nuORF;nc|ENSG00000179241|Q86YD5-2|LDLRAD3;ENSG00000179241|ENST00000315571|LDLRAD3 ENST00000532490.1_1_11:36022639-36250762:+|nuORF ENST00000532490.1_1_11:36022639-36250762:+|nuORF MSMS UPN47_class_I_Rep_1 2 584.194091796875 2 584.196381 1166.37821 NaN NaN NaN NaN NaN NaN NaN 115.02 1 118.6 118.1 119.1 3.5809 0 0 0 0.53105 1 28441 28441 1.3295 0.80477 1 28854 4854 18247 18258 33401 33401 -0.1983242930546112 NNDMVREIR 9 Unmodified _NNDMVREIR_ 0 0 0 REV__ENSG00000146950|ENST00000380913|SHROOM2 REV__ENSG00000146950|ENST00000380913|SHROOM2 MSMS UPN48_class_I_Rep_1 5 573.7886962890625 2 573.787847 1145.56114 NaN NaN NaN NaN NaN NaN NaN 50.867 1 54.391 53.891 54.891 3.5246 0 0 0 0.39598 1 10432 10432 1.6526 0.85899 1 + 28855 19553 18248 18259 33402 33402 -0.005817856623025364 NNECDNDECDD 11 Unmodified _NNECDNDECDD_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS UPN47_class_I_Rep_2 3 643.1824340820312 2 643.182614 1284.35067 NaN NaN NaN NaN NaN NaN NaN 119.38 1 122.86 122.36 123.36 3.4793 0 0 0 0.38417 1 29240 29240 0 0 1 + 28856 19503 18249 18260 33403 33403 -0.2801270062798267 NNEITWTPW 9 Unmodified _NNEITWTPW_ 0 0 0 L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|138|2|sense L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|138|2|sense L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|138|2|sense MSMS UPN47_class_I_Rep_1 2 580.771240234375 2 580.772188 1159.52982 NaN NaN NaN NaN NaN NaN NaN 85.745 1 89.36 88.86 89.86 3.6153 0 0 0 0.39428 1 21411 21411 2.0598 0.21551 1 28857 14639 18250 18261 33404 33404 -0.043560354247802024 NNEKITVLY 9 Unmodified _NNEKITVLY_ 0 0 0 REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1 REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1 MSMS UPN47_class_I_Rep_2 3 547.2982788085938 2 547.298039 1092.58152 NaN NaN NaN NaN NaN NaN NaN 31.793 1 35.262 34.762 35.762 3.4691 0 0 0 0.38916 1 5426 5426 3.2813 0.54611 1 + 28858 19788 18251 18262 33405 33405 0.038937082691290925 NNELYLPP 8 Unmodified _NNELYLPP_ 0 0 0 REV__MSTA-int_dup1333|chr7:130974083-130975650:+|1.5910565974324509|0.381807447355624|2.06|151.0|48|3|sense REV__MSTA-int_dup1333|chr7:130974083-130975650:+|1.5910565974324509|0.381807447355624|2.06|151.0|48|3|sense MSMS UPN47_class_I_Rep_3 4 480.2452087402344 2 480.245275 958.475997 NaN NaN NaN NaN NaN NaN NaN 29.57 1 32.894 32.394 33.394 3.3235 0 0 0 0.40738 1 4799 4799 0.79363 0 1 + 28859 31863 18252 18263 33406 33406 -0.004902078564896328 NNEYKWTRRWE 11 Unmodified _NNEYKWTRRWE_ 0 0 0 L1PA17_dup3437|chr12:2839748-2840119:+|1.8324431618548855|0.2385250081193008|2.94|151.0|2|1|sense L1PA17_dup3437|chr12:2839748-2840119:+|1.8324431618548855|0.2385250081193008|2.94|151.0|2|1|sense L1PA17_dup3437|chr12:2839748-2840119:+|1.8324431618548855|0.2385250081193008|2.94|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 528.259033203125 3 527.923418 1580.74842 -0.10074 -5.3185E-05 -0.092481 -4.8823E-05 -0.19322 -0.00010201 527.9231632589318 22.075 0.36403 22.075 21.99 22.354 0 73 38 2 0 0 0 0.68478 1 2555 2555 0.094841 0 1 295900 28860 14175 18253 18264 33407 33407 -0.01872050853262408 NNFKLFLQ 8 Unmodified _NNFKLFLQ_ 0 0 0 L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|16|1|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|16|1|sense L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|16|1|sense MSMS UPN47_class_I_Rep_2 3 512.768310546875 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 33.266 1 36.706 36.206 37.206 3.4398 0 0 0 0.40625 1 5871 5871 2.3027 0.24298 1 28861 9661 18254 18265 33408 33408 0.04454064168453442 NNGIYIAAL 9 Unmodified _NNGIYIAAL_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MSMS UPN46_class_I_Rep_3 1 474.76092529296875 2 474.761092 947.507631 0.18988 9.0149E-05 -0.073496 -3.4893E-05 0.11639 5.5256E-05 474.7609858280357 64.963 0.66415 64.963 64.641 65.305 0 113 68 2 0 0 0 0.40174 1 14591 14591 7.9102 0.62092 1 430420 + + 28862 17469 18255 18266 33409 33409 0.031777848974684275 NNHEMHDTDC 10 Unmodified _NNHEMHDTDC_ 0 0 0 REV__ENSG00000122707|ENST00000377966|RECK REV__ENSG00000122707|ENST00000377966|RECK MSMS UPN47_class_I_Rep_3 4 405.7991638183594 3 405.809966 1214.40807 NaN NaN NaN NaN NaN NaN NaN 111.52 1 115.04 114.54 115.54 3.5207 0 0 0 0.53105 1 27378 27378 0.15932 0 1 + 28863 18758 18256 18267 33410 33410 -0.19055768841076315 NNHKKKQK 8 Unmodified _NNHKKKQK_ 0 0 0 REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|151|3|sense REV__L1MC2_dup3551|chrX:75088142-75093766:+|2.299340553235297|0.0898510995248659|4.68|151.0|151|3|sense MSMS UPN46_class_I_Rep_3 1 512.8038940429688 2 512.804157 1023.59376 NaN NaN NaN NaN NaN NaN NaN 31.229 1 31.229 30.729 31.729 0 0 0 0 0.40746 1 5190 5190 0.69038 0 1 + 28864 26660 18257 18268 33411 33411 0.08290789522845898 NNHSGVQSVVS 11 Unmodified _NNHSGVQSVVS_ 0 0 0 REV__L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|317|2|anti-sense REV__L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|317|2|anti-sense MSMS UPN47_class_I_Rep_1 2 564.25927734375 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 19.487 1 23.099 22.599 23.599 3.6118 0 0 0 0.38417 1 1802 1802 1.0715 0.38109 1 + 28865 29004 18258 18269 33412 33412 -0.021507225441837363 NNIARCFRQ 9 Unmodified _NNIARCFRQ_ 0 0 0 REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|4|1|sense REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 561.5362548828125 2 561.285274 1120.556 -0.14333 -8.0451E-05 1.067 0.00059888 0.92364 0.00051843 561.787146142976 32.881 0.14056 36.168 36.088 36.229 3.2867 13 8 2 0 0 0 0.48643 1 5778 5778 2.0598 1.2661 1 25918 + 28866 28232 18259 18270 33413 33413 0.0005395526573011011 NNIARCFRQ 9 Unmodified _NNIARCFRQ_ 0 0 0 REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|4|1|sense REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 561.285274 1120.556 0.046087 2.5868E-05 0.49447 0.00027754 0.54056 0.00030341 561.2858414695736 32.815 0.10379 36.27 36.172 36.276 3.4547 0.050891 -0.00037325 NaN 2.0598 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 44479 + 28867 28232 18259 18270 0.0005395526573011011 NNIARCFRQ 9 Unmodified _NNIARCFRQ_ 0 0 0 REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|4|1|sense REV__L1ME4a_dup33906|chr22:47121017-47121750:+|1.0845480949839714|0.0354471617500136|4.94|151.0|4|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 561.285274 1120.556 -0.14333 -8.0451E-05 1.067 0.00059888 0.92364 0.00051843 561.787146142976 32.881 0.14056 36.168 36.088 36.229 3.2867 -0.050891 0.00026942 NaN 2.0598 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 25918 + 28868 28232 18259 18270 0.0005395526573011011 NNKDRIAL 8 Unmodified _NNKDRIAL_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|140|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|140|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|140|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.7709655761719 2 472.269616 942.524678 0.22421 0.00010589 -0.15708 -7.4186E-05 0.067129 3.1703E-05 472.26937955996937 78.491 0.3812 78.491 78.383 78.764 0 54 40 2 0 0 0 0.82752 1 18440 18440 0.69038 0 1 59601 28869 12201 18260 18271 33414 33414 0.05111705503259145 NNKFNKNLF 9 Unmodified _NNKFNKNLF_ 0 0 0 REV__Tigger15a_dup1924|chr6:37851566-37851784:+|1.1658522120267798|0.0063473481493224|7.52|151.0|10|1|anti-sense REV__Tigger15a_dup1924|chr6:37851566-37851784:+|1.1658522120267798|0.0063473481493224|7.52|151.0|10|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.80419921875 2 569.803823 1137.59309 NaN NaN NaN NaN NaN NaN NaN 39.379 1 43.035 42.535 43.535 3.6557 0 0 0 0.38478 1 6882 6882 4.3292 0.38484 1 + 28870 32589 18261 18272 33415 33415 0.029799500831359182 NNKGIRLK 8 Unmodified _NNKGIRLK_ 0 0 0 REV__L1MC5_dup9325|chr10:52727693-52728850:+|1.0737340178107877|0.0035533931386091|8.24|143.0|35|3|sense REV__L1MC5_dup9325|chr10:52727693-52728850:+|1.0737340178107877|0.0035533931386091|8.24|143.0|35|3|sense MSMS UPN47_class_I_Rep_3 4 471.7857360839844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 51.257 1 54.473 53.973 54.973 3.2163 0 0 0 0.40604 1 11392 11392 2.5775 0 1 + 28871 27097 18262 18273 33416 33416 0.1039228863688777 NNKKKKKQ 8 Unmodified _NNKKKKKQ_ 0 0 0 L1MB3_dup12148|chr12:120881495-120881957:+|1.7149340500939012|0.0068934845007139|7.96|151.0|3|1|sense REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|73|3|sense REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|73|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 508.3216552734375 2 508.322183 1014.62981 -0.28344 -0.00014408 -0.47299 -0.00024043 -0.75643 -0.00038451 508.32176878303727 12.058 0.17527 15.508 15.448 15.624 3.45 49 23 3 0 0 0 0.82752 1 13 13 12.532 0 1 105320 28872 10330 18263 18274 33417 33417 0.1230824669970616 NNKKKKLHKN 10 Unmodified _NNKKKKLHKN_ 0 0 0 REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|181|3|sense REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|181|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3898315429688 2 626.385845 1250.75714 0.42788 0.00026802 4.2145 0.0026399 4.6424 0.0029079 626.8897028125243 105.91 0.13482 109.53 109.47 109.61 3.6277 21 15 2 0 0 0 0.56333 1 25517 25517 1.4819 0.15237 1 230860 + 28873 30268 18264 18275 33418 33418 0.14178967573889167 NNKLFRKWE 9 Unmodified _NNKLFRKWE_ 0 0 0 REV__ENSG00000106688|ENST00000262352|SLC1A1 REV__ENSG00000106688|ENST00000262352|SLC1A1 MSMS UPN46_class_I_Rep_3 1 617.8366088867188 2 617.838197 1233.66184 NaN NaN NaN NaN NaN NaN NaN 46.065 1 46.065 45.565 46.565 0 0 0 0 0.39428 1 9416 9416 2.0598 0 1 + 28874 18336 18265 18276 33419 33419 0.054356143828499626 NNKQFVILK 9 Unmodified _NNKQFVILK_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|4|1|sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.3323974609375 2 552.332216 1102.64988 0.45581 0.00025176 0.60442 0.00033384 1.0602 0.0005856 552.3321799707367 50.079 0.84282 53.773 53.463 54.306 3.6946 91 55 3 0 0 0 0.42249 1 10246 10246 6.7232 1.4263 1 396210 + 28875 26993 18266 18277 33420 33420 0.10265997639658053 NNKTVNLSV 9 Unmodified _NNKTVNLSV_ 0 0 0 L1MB3_dup16860|chr21:42983122-42984051:-|2.02345950025798|0.2385649080380745|3.08|151.0|46|1|anti-sense L1MB3_dup16860|chr21:42983122-42984051:-|2.02345950025798|0.2385649080380745|3.08|151.0|46|1|anti-sense L1MB3_dup16860|chr21:42983122-42984051:-|2.02345950025798|0.2385649080380745|3.08|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.7874450683594 2 494.774731 987.534909 NaN NaN NaN NaN NaN NaN NaN 13.568 1 16.956 16.456 17.456 3.388 0 0 0 0.32573 1 355 355 9.3831 1.473 1 28876 10372 18267 18278 33421 33421 0.040642684378553895 NNKVEAQFI 9 Unmodified _NNKVEAQFI_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.7825317382812 2 531.782556 1061.55056 0.3506 0.00018644 -0.089561 -4.7627E-05 0.26104 0.00013882 531.782470665805 55.703 0.9171 59.013 58.705 59.622 3.3102 86 54 2 0 0 0 0.14216 1 12709 12709 26.268 1.2772 1 187540 + 28877 31486 18268 18279 33422 33422 0.022245549549097632 NNKVEAQFI 9 Unmodified _NNKVEAQFI_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 531.782556 1061.55056 0.39529 0.00021021 -0.026008 -1.3831E-05 0.36928 0.00019638 531.7824633924766 55.784 0.65384 59.285 59.001 59.654 3.5014 0.14866 1.75E-05 NaN 26.268 83 46 2 NaN NaN NaN NaN 0 NaN NaN 0 293420 + 28878 31486 18268 18279 0.022245549549097632 NNKVEAQFI 9 Unmodified _NNKVEAQFI_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 531.782556 1061.55056 0.55054 0.00029277 -0.12654 -6.7294E-05 0.42399 0.00022547 531.7823656561714 55.767 0.67894 59.323 58.952 59.631 3.5559 0.1865 -8.9427E-05 NaN 26.268 95 46 3 NaN NaN NaN NaN 0 NaN NaN 0 255960 + 28879 31486 18268 18279 0.022245549549097632 NNKVEAQFI 9 Unmodified _NNKVEAQFI_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|170|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 531.782556 1061.55056 0.39624 0.00021071 0.03962 2.1069E-05 0.43586 0.00023178 531.782527574747 55.737 0.72795 59.292 58.885 59.613 3.5554 0.15541 8.73E-05 NaN 26.268 100 49 3 NaN NaN NaN NaN 0 NaN NaN 0 421810 + 28880 31486 18268 18279 0.022245549549097632 NNKVKVIL 8 Unmodified _NNKVKVIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000600818.1_1_19:39966660-39967036:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS UPN47_class_I_Rep_1 2 464.8039855957031 2 464.302927 926.591301 -0.35617 -0.00016537 -0.22012 -0.0001022 -0.57629 -0.00026757 464.30269434042776 29.603 0.7352 33.361 33.057 33.792 3.7578 75 54 2 0 0 0 0.82752 1 4754 4754 12.532 3.9383 1 104730 28881 5292 18269 18280 33423 33423 0.125069410651804 NNKVKVIL 8 Unmodified _NNKVKVIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000600818.1_1_19:39966660-39967036:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH UPN47_class_I_Rep_2 3 2 464.302927 926.591301 -0.39951 -0.00018549 -0.22891 -0.00010628 -0.62842 -0.00029178 464.30269404656656 29.943 0.74192 33.435 33.061 33.803 3.4923 -0.01501 -0.00012571 NaN 12.532 89 61 2 NaN NaN NaN NaN 0 NaN NaN 0 96142 28882 5292 18269 18280 0.125069410651804 NNKVKVIL 8 Unmodified _NNKVKVIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000600818.1_1_19:39966660-39967036:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH UPN47_class_I_Rep_3 4 2 464.302927 926.591301 -0.71363 -0.00033134 0.20056 9.3121E-05 -0.51307 -0.00023822 464.30294334760504 30.243 0.62518 33.555 33.227 33.852 3.3116 0.10437 0.0002731 NaN 12.532 76 50 2 NaN NaN NaN NaN 0 NaN NaN 0 87573 28883 5292 18269 18280 0.125069410651804 NNKVRGVI 8 Unmodified _NNKVRGVI_ 0 0 0 L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.274658203125 2 450.274701 898.534849 0.18562 8.3581E-05 0.11008 4.9566E-05 0.2957 0.00013315 450.2747464375719 89.056 0.34383 89.056 88.757 89.101 0 52 35 2 0 0 0 0.82752 1 21405 21405 0.79363 0 1 174190 28884 12161 18270 18281 33424 33424 0.08152313228526964 NNKVRGVI 8 Unmodified _NNKVRGVI_ 0 0 0 L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 450.274701 898.534849 -0.0482 -2.1703E-05 0.17386 7.8287E-05 0.12566 5.6584E-05 450.2747657768858 85.654 0.11469 89.087 89.043 89.158 3.4329 0.015903 4.743E-05 NaN 0.79363 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 80968 28885 12161 18270 18281 0.08152313228526964 NNKVRGVI 8 Unmodified _NNKVRGVI_ 0 0 0 L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 450.274701 898.534849 0.14868 6.6946E-05 0.13922 6.2689E-05 0.2879 0.00012964 450.27472882877066 85.332 0.07811 89.038 89 89.078 3.7058 -0.032702 1.6233E-05 NaN 0.79363 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 95806 28886 12161 18270 18281 0.08152313228526964 NNKVRGVI 8 Unmodified _NNKVRGVI_ 0 0 0 L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|50|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 450.274701 898.534849 0.18984 8.548E-05 -0.045787 -2.0617E-05 0.14405 6.4863E-05 450.2745086234243 85.216 0.21004 88.965 88.892 89.102 3.7494 -0.10596 -0.00015038 NaN 0.79363 36 28 2 NaN NaN NaN NaN 0 NaN NaN 0 239480 28887 12161 18270 18281 0.08152313228526964 NNKYPIGL 8 Unmodified _NNKYPIGL_ 0 0 0 REV__ENSG00000197641|ENST00000344731|SERPINB13 REV__ENSG00000197641|ENST00000344731|SERPINB13 MULTI-MSMS UPN48_class_I_Rep_1 5 459.75592041015625 2 459.75581 917.497067 0.030938 1.4224E-05 0.38534 0.00017716 0.41628 0.00019139 459.75602153713317 48.162 0.55027 51.684 51.388 51.938 3.5219 65 36 2 0 0 0 0.82752 1 9597 9597 13.508 1.8676 1 160320 + 28888 21090 18271 18282 33425 33425 0.03501802243022212 NNKYPIGL 8 Unmodified _NNKYPIGL_ 0 0 0 REV__ENSG00000197641|ENST00000344731|SERPINB13 REV__ENSG00000197641|ENST00000344731|SERPINB13 MULTI-SECPEP UPN48_class_I_Rep_1 5 459.26995849609375 2 459.75581 917.497067 0.030938 1.4224E-05 0.38534 0.00017716 0.41628 0.00019139 459.75602153713317 48.162 0.55027 51.684 51.388 51.938 3.5219 65 36 2 0 0 0 0.72333 1 9651 9651 13.508 13.508 1 160320 + 28889 21090 18271 18282 33426 33426 0.03501802243022212 NNKYPIGL 8 Unmodified _NNKYPIGL_ 0 0 0 REV__ENSG00000197641|ENST00000344731|SERPINB13 REV__ENSG00000197641|ENST00000344731|SERPINB13 MULTI-MSMS UPN48_class_I_Rep_2 6 459.7561950683594 2 459.75581 917.497067 0.076485 3.5164E-05 0.24755 0.00011381 0.32404 0.00014898 459.75596328335536 47.863 0.63575 51.599 51.3 51.936 3.7361 78 43 3 0 0 0 0.82752 1 9510 9510 13.508 1.8676 1 198270 + 28890 21090 18271 18282 33427 33427 0.03501802243022212 NNKYPIGL 8 Unmodified _NNKYPIGL_ 0 0 0 REV__ENSG00000197641|ENST00000344731|SERPINB13 REV__ENSG00000197641|ENST00000344731|SERPINB13 MULTI-MSMS UPN48_class_I_Rep_3 7 459.75634765625 2 459.75581 917.497067 0.10019 4.6061E-05 0.49241 0.00022639 0.5926 0.00027245 459.756086472725 48.141 0.57248 51.775 51.425 51.998 3.6339 66 36 2 0 0 0 0.82752 1 9531 9531 13.508 1.8676 1 201710 + 28891 21090 18271 18282 33428 33428 0.03501802243022212 NNKYPIGL 8 Unmodified _NNKYPIGL_ 0 0 0 REV__ENSG00000197641|ENST00000344731|SERPINB13 REV__ENSG00000197641|ENST00000344731|SERPINB13 MULTI-SECPEP UPN48_class_I_Rep_3 7 459.1721496582031 2 459.75581 917.497067 0.10019 4.6061E-05 0.49241 0.00022639 0.5926 0.00027245 459.756086472725 48.141 0.57248 51.775 51.425 51.998 3.6339 66 36 2 0 0 0 0.72333 1 9503 9503 13.508 1.8676 1 201710 + 28892 21090 18271 18282 33429 33429 0.03501802243022212 NNLLANKLK 9 Unmodified _NNLLANKLK_ 0 0 0 REV__L1MD_dup5156|chrX:72416445-72416968:-|1.1254608506396813|0.0973069165038758|3.53|151.0|19|3|sense REV__L1MD_dup5156|chrX:72416445-72416968:-|1.1254608506396813|0.0973069165038758|3.53|151.0|19|3|sense MSMS UPN48_class_I_Rep_2 6 514.3163452148438 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 88.214 1 91.942 91.442 92.442 3.7279 0 0 0 0.38478 1 21001 21001 4.3292 0 1 + 28893 27275 18272 18283 33430 33430 0.10633424605566688 NNLLIKKKKKA 11 Unmodified _NNLLIKKKKKA_ 0 0 0 L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|4|1|sense L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|4|1|sense L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 433.2953796386719 3 433.294123 1296.86054 NaN NaN NaN NaN NaN NaN NaN 108.74 1 112.38 111.88 112.88 3.6355 0 0 0 0.38417 1 26753 26753 0.45452 0 1 28894 8884 18273 18284 33431 33431 0.2239845496169437 NNLLTYNLK 9 Unmodified _NNLLTYNLK_ 0 0 0 REV__L1M4_dup10739|chrX:47949765-47952049:+|1.0283277804292374|0.0442919580532382|4.54|151.0|8|1|sense REV__L1M4_dup10739|chrX:47949765-47952049:+|1.0283277804292374|0.0442919580532382|4.54|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.8054809570312 2 546.806031 1091.59751 -0.023807 -1.3018E-05 -0.02737 -1.4966E-05 -0.051177 -2.7984E-05 546.80589550695 29.413 0.64069 33.171 32.746 33.387 3.7578 68 51 2 0 0 0 0.48846 1 4655 4655 1.8442 0 1 112420 + 28895 24350 18274 18285 33432 33432 0.05537414506011373 NNLWLFPP 8 Unmodified _NNLWLFPP_ 0 0 0 REV__L1MB1_dup5160|chr15:49955362-49955998:+|1.324014604374787|0.0016525498082844|9.65|150.0|34|2|anti-sense REV__L1MB1_dup5160|chr15:49955362-49955998:+|1.324014604374787|0.0016525498082844|9.65|150.0|34|2|anti-sense MSMS UPN48_class_I_Rep_3 7 500.89410400390625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 82.392 1 86.098 85.598 86.598 3.7066 0 0 0 0.40625 1 19528 19528 2.3027 0 1 + 28896 25684 18275 18286 33433 33433 0.018023926226987896 NNLWPCHH 8 Unmodified _NNLWPCHH_ 0 0 0 REV__nc|ENSG00000171307|Q969W1-4|ZDHHC16 REV__nc|ENSG00000171307|Q969W1-4|ZDHHC16 MSMS UPN48_class_I_Rep_3 7 510.72711181640625 2 510.727061 1019.43957 NaN NaN NaN NaN NaN NaN NaN 113.5 1 117.16 116.66 117.66 3.6568 0 0 0 0.40738 1 26991 26991 0.79363 0 1 + 28897 20401 18276 18287 33434 33434 -0.06937363234180793 NNMDETRRH 9 Unmodified _NNMDETRRH_ 0 0 0 L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|5|1|sense L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|5|1|sense L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 586.7664794921875 2 586.764903 1171.51525 NaN NaN NaN NaN NaN NaN NaN 26.813 1 30.444 29.944 30.944 3.6311 0 0 0 0.3967 1 3466 3466 1.4819 0.15237 1 28898 9501 18277 18288 33435 33435 -0.06364430844541857 NNNFGVVLTD 10 Unmodified _NNNFGVVLTD_ 0 0 0 ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON ENSG00000064309|ENST00000531738|CDON ENSG00000064309|ENST00000531738|CDON MSMS UPN48_class_I_Rep_2 6 546.7680053710938 2 546.769645 1091.52474 NaN NaN NaN NaN NaN NaN NaN 119.27 1 122.93 122.43 123.43 3.6652 0 0 0 0.53105 1 28621 28621 3.5965 1.019 1 28899 989 18278 18289 33436 33436 -0.017363392873676275 NNQNFRKQW 9 Unmodified _NNQNFRKQW_ 0 0 0 L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|56|2|sense;L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|144|3|sense;L1PBa_dup861|chr6:47545146-47546555:+|1.6871630441335477|0.0358445165349998|5.56|151.0|25|2|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|56|2|sense L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|56|2|sense L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 617.802001953125 2 617.807428 1233.6003 0.46036 0.00028441 -3.8694 -0.0023905 -3.409 -0.0021061 617.8033472263905 75.306 0.15083 78.806 78.747 78.898 3.4996 33 12 4 0 0 0 0.48846 1 17852 17852 1.8442 0.36234 1 283850 28900 15122 18279 18290 33437 33437 -0.007153173164397231 NNRKAFRFL 9 Unmodified _NNRKAFRFL_ 0 0 0 REV__L1MC5a_dup11629|chr11:116937169-116937922:+|1.382262125877221|0.0249562541105969|5.79|151.0|12|2|sense REV__L1MC5a_dup11629|chr11:116937169-116937922:+|1.382262125877221|0.0249562541105969|5.79|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 583.333984375 2 583.333082 1164.65161 NaN NaN NaN NaN NaN NaN NaN 86.874 1 90.512 90.012 91.012 3.6372 0 0 0 0.39518 1 21702 21702 1.8442 1.1539 1 + 28901 27111 18280 18291 33438 33438 0.07587051448263082 NNRKRQHH 8 Unmodified _NNRKRQHH_ 0 0 0 REV__nc|ENSG00000179241|Q86YD5-2|LDLRAD3 REV__nc|ENSG00000179241|Q86YD5-2|LDLRAD3 MSMS UPN47_class_I_Rep_2 3 545.2931518554688 2 545.292279 1088.57001 NaN NaN NaN NaN NaN NaN NaN 26.226 1 29.72 29.22 30.22 3.4945 0 0 0 0.40625 1 3763 3763 2.3027 0 1 + 28902 20673 18281 18292 33439 33439 0.02926368809039559 NNRRRLRR 8 Unmodified _NNRRRLRR_ 0 0 0 REV__L1MC4a_dup7298|chr12:66203341-66203561:+|2.0051470946421173|0.0760125642592347|4.72|150.0|4|2|sense REV__L1MC4a_dup7298|chr12:66203341-66203561:+|2.0051470946421173|0.0760125642592347|4.72|150.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 570.8483276367188 2 570.850296 1139.68604 NaN NaN NaN NaN NaN NaN NaN 43.248 1 43.248 42.748 43.748 0 0 0 0 0.40746 1 8621 8621 0.69038 0.088878 1 + 28903 27014 18282 18293 33440 33440 0.12178312379751333 NNSQMLLF 8 Unmodified _NNSQMLLF_ 0 0 0 REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|161|3|anti-sense REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|161|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 484.20306396484375 2 483.739302 965.464052 -0.29654 -0.00014345 -1.4927 -0.00072208 -1.7892 -0.00086552 483.7391189989667 34.475 0.085121 38.16 38.132 38.218 3.6859 8 6 2 0 0 0 0.72333 1 6208 6208 2.8892 0 1 36538 + 28904 26404 18283 18294 33441 33441 -0.0200614787130462 NNTQKKECGL 10 Unmodified _NNTQKKECGL_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|314|2|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|314|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 567.2787475585938 2 567.78223 1133.54991 0.53145 0.00030175 -1.7944 -0.0010188 -1.263 -0.00071708 567.7814948970597 63.328 0.16588 66.802 66.679 66.845 3.4738 18 14 2 0 0 0 0.84575 1 14205 14205 2.9952 0.69251 1 100930 + 28905 30137 18284 18295 33442 33442 -0.011526077564667503 NNVITMRYF 9 Unmodified _NNVITMRYF_ 0 0 0 REV__L1MA5A_dup3141|chr18:9393965-9394701:+|1.1369857946213018|0.0550873627571956|4.37|151.0|13|2|sense REV__L1MA5A_dup3141|chr18:9393965-9394701:+|1.1369857946213018|0.0550873627571956|4.37|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.7933959960938 2 579.292233 1156.56991 0.39091 0.00022645 0.15737 9.1161E-05 0.54828 0.00031761 579.7929431404668 35.172 0.59071 38.845 38.63 39.221 3.6721 107 63 3 0 0 0 0.48846 1 5655 5655 1.8442 0.19162 1 93519 + 28906 25419 18285 18296 33443 33443 -0.002108120258526469 NNWGDFHV 8 Unmodified _NNWGDFHV_ 0 0 0 REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3 REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MSMS UPN48_class_I_Rep_1 5 494.7183837890625 2 494.717216 987.419879 NaN NaN NaN NaN NaN NaN NaN 115.62 1 119.25 118.75 119.75 3.6282 0 0 0 0.40738 1 28134 28134 0.79363 0 1 + 28907 21167 18286 18297 33444 33444 -0.07433415973287083 NNYIVIIGIV 10 Unmodified _NNYIVIIGIV_ 0 0 0 REV__MER45R_dup392|chr10:38050373-38051839:+|1.6678467038473888|0.3015678940501148|2.47|151.0|66|2|anti-sense REV__MER45R_dup392|chr10:38050373-38051839:+|1.6678467038473888|0.3015678940501148|2.47|151.0|66|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.3343505859375 2 559.334424 1116.6543 0.3903 0.00021831 -0.31582 -0.00017665 0.074481 4.166E-05 559.3341474258675 68.219 0.22783 71.489 71.309 71.537 3.2696 25 20 2 0 0 0 0.56309 1 16490 16490 1.6526 0 1 46508 + 28908 31335 18287 18298 33445 33445 0.10063462062544204 NPAPNKVK 8 Unmodified _NPAPNKVK_ 0 0 0 L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|7|1|sense L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|7|1|sense L1MEc_dup18350|chr22:49879921-49880662:-|2.177062506401539|0.2522776743384082|3.11|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 434.2579345703125 2 434.255977 866.497401 NaN NaN NaN NaN NaN NaN NaN 105.17 1 108.91 108.41 109.41 3.7395 0 0 0 0.40746 1 25823 25823 0.69038 0 1 28909 13073 18288 18299 33446 33446 0.05881221962908967 NPARKKTRY 9 Unmodified _NPARKKTRY_ 0 0 0 REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3300170898438 2 567.330539 1132.64652 0.43407 0.00024626 -0.44004 -0.00024965 -0.0059686 -3.3862E-06 567.3301887175672 82.243 0.1978 85.818 85.766 85.964 3.5753 39 24 2 0 0 0 0.49026 1 19629 19629 1.6526 0.32309 1 88746 + 28910 29329 18289 18300 33447 33447 0.0855074758567298 NPARKKTRY 9 Unmodified _NPARKKTRY_ 0 0 0 REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 567.330539 1132.64652 0.52536 0.00029805 -1.2051 -0.00068368 -0.67972 -0.00038562 567.3296242380662 82.576 0.19019 85.974 85.88 86.07 3.3984 0.10544 -0.00072127 NaN 1.6526 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 104850 + 28911 29329 18289 18300 0.0855074758567298 NPARKKTRY 9 Unmodified _NPARKKTRY_ 0 0 0 REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 567.330539 1132.64652 0.47553 0.00026979 -0.54589 -0.0003097 -0.070356 -3.9915E-05 567.3300572325182 82.426 0.25441 85.763 85.687 85.941 3.337 -0.10605 2.6679E-05 NaN 1.6526 46 30 2 NaN NaN NaN NaN 0 NaN NaN 0 83338 + 28912 29329 18289 18300 0.0855074758567298 NPAVKKESKHK 11 Unmodified _NPAVKKESKHK_ 0 0 0 REV__Tigger17a_dup1026|chr7:140810674-140811213:+|1.363226864449679|0.0293211466766521|5.54|150.0|21|1|anti-sense REV__Tigger17a_dup1026|chr7:140810674-140811213:+|1.363226864449679|0.0293211466766521|5.54|150.0|21|1|anti-sense MSMS UPN48_class_I_Rep_2 6 422.5925598144531 3 422.582333 1264.72517 NaN NaN NaN NaN NaN NaN NaN 61.781 1 65.255 64.755 65.755 3.4738 0 0 0 0.38417 1 13753 13753 1.2148 0 1 + 28913 32598 18290 18301 33448 33448 0.1033955510006308 NPAYALSSKF 10 Unmodified _NPAYALSSKF_ 0 0 0 Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|142|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|142|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|142|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2860107421875 2 549.284931 1096.55531 0.34028 0.00018691 -0.14232 -7.8177E-05 0.19795 0.00010873 549.284841103378 39.337 0.59811 42.993 42.805 43.403 3.6557 74 53 2 0 0 0 0.55448 1 6860 6860 4.897 4.897 1 105550 28914 33190 18291 18302 33449 33449 0.010894390976773138 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MULTI-MSMS UPN46_class_I_Rep_3 1 543.7827758789062 2 543.782556 1085.55056 0.32446 0.00017643 0.18797 0.00010221 0.51242 0.00027865 543.7825629512275 49.644 0.87021 49.644 49.275 50.145 0 201 93 3 0 0 0 0.17897 2 10426 10426;10462 22.736 3.4793 1 1054900 + 28915 19491 18292 18303 33450;33451 33450 0.01120554954900399 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MULTI-MSMS UPN47_class_I_Rep_1 2 543.78271484375 2 543.782556 1085.55056 0.12722 6.9182E-05 -0.027963 -1.5206E-05 0.099262 5.3977E-05 543.7826396579136 44.538 2.5245 48.233 47.76 50.284 3.6951 396 161 3 0 0 0 0.1249 8 9318 9194;9318;9361;9402;9444;9481;9526;9769 29.082 9.8246 1 7323300 + 28916 19491 18292 18303 33452;33453;33454;33455;33456;33457;33458;33459 33453 0.01120554954900399 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MSMS UPN47_class_I_Rep_1 2 543.782958984375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 46.454 1 50.154 49.654 50.654 3.6999 0 0 0 0.32573 1 9854 9854 9.3831 0 1 + 28917 19491 18292 18303 33460 33460 0.01120554954900399 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MSMS UPN47_class_I_Rep_1 2 543.7841186523438 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 46.901 1 50.596 50.096 51.096 3.6951 0 0 0 0.32573 1 9992 9992 9.3831 0 1 + 28918 19491 18292 18303 33461 33461 0.01120554954900399 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MSMS UPN47_class_I_Rep_1 2 543.7825317382812 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 47.018 1 50.713 50.213 51.213 3.6951 0 0 0 0.34878 1 10028 10028 8.1555 1.9497 1 + 28919 19491 18292 18303 33462 33462 0.01120554954900399 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MULTI-MSMS UPN47_class_I_Rep_2 3 543.7827758789062 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.1249 8 9445 9327;9445;9530;9569;9608;9646;9688;9728 29.082 9.8246 1 7409700 + 28920 19491 18292 18303 33463;33464;33465;33466;33467;33468;33469;33470 33464 0.01120554954900399 NPDPVEFLR 9 Unmodified _NPDPVEFLR_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MULTI-MSMS UPN47_class_I_Rep_3 4 543.7826538085938 2 543.782556 1085.55056 0.21383 0.00011628 -0.0054587 -2.9684E-06 0.20837 0.00011331 543.7826467027404 45.035 2.5291 48.279 47.763 50.292 3.2441 412 158 3 0 0 0 0.1249 10 9583 9416;9583;9624;9666;9711;9750;9795;9839;9878;10091 29.082 9.8246 1 8447000 + 28921 19491 18292 18303 33471;33472;33473;33474;33475;33476;33477;33478;33479;33480 33472 0.01120554954900399 NPDVLDSRIE 10 Unmodified _NPDVLDSRIE_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS UPN48_class_I_Rep_3 7 579.2930297851562 2 579.293485 1156.57242 NaN NaN NaN NaN NaN NaN NaN 58.777 1 62.3 61.8 62.8 3.5231 0 0 0 0.53105 1 12769 12769 1.1933 0.23107 1 28922 856 18293 18304 33481 33481 0.00039314912805821223 NPFLKPYT 8 Unmodified _NPFLKPYT_ 0 0 0 L1PA5_dup6140|chr9:21020989-21023383:+|1.7750080941389212|0.1311794185479696|3.76|151.0|14|1|sense L1PA5_dup6140|chr9:21020989-21023383:+|1.7750080941389212|0.1311794185479696|3.76|151.0|14|1|sense L1PA5_dup6140|chr9:21020989-21023383:+|1.7750080941389212|0.1311794185479696|3.76|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 489.8062744140625 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 106.61 1 110.24 109.74 110.74 3.6299 0 0 0 0.40404 1 25683 25683 5.2307 0 1 28923 14503 18294 18305 33482 33482 0.02734972902840127 NPFLYQLIY 9 Unmodified _NPFLYQLIY_ 0 0 0 L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|135|1|anti-sense L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|135|1|anti-sense L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|135|1|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7932739257812 2 585.813325 1169.6121 NaN NaN NaN NaN NaN NaN NaN 53.901 1 57.087 56.587 57.587 3.1856 0 0 0 0.26661 1 12195 12195 12.532 0 1 28924 10223 18295 18306 33483 33483 0.034074866542141535 NPGHSPYL 8 Unmodified _NPGHSPYL_ 0 0 0 MLT1D_dup12837|chr10:75513472-75513942:-|1.7650491046347154|0.0079164748705336|7.8|150.0|31|2|anti-sense MLT1D_dup12837|chr10:75513472-75513942:-|1.7650491046347154|0.0079164748705336|7.8|150.0|31|2|anti-sense MLT1D_dup12837|chr10:75513472-75513942:-|1.7650491046347154|0.0079164748705336|7.8|150.0|31|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 442.23138427734375 2 442.716685 883.418816 -0.36381 -0.00016106 0.66597 0.00029483 0.30216 0.00013377 442.7168239019794 40.151 0.073589 43.818 43.778 43.851 3.6668 7 4 2 0 0 0 0.72333 1 7930 7930 12.532 0 1 39807 28925 16330 18296 18307 33484 33484 -0.027556303421874873 NPGHSPYL 8 Unmodified _NPGHSPYL_ 0 0 0 MLT1D_dup12837|chr10:75513472-75513942:-|1.7650491046347154|0.0079164748705336|7.8|150.0|31|2|anti-sense MLT1D_dup12837|chr10:75513472-75513942:-|1.7650491046347154|0.0079164748705336|7.8|150.0|31|2|anti-sense MLT1D_dup12837|chr10:75513472-75513942:-|1.7650491046347154|0.0079164748705336|7.8|150.0|31|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 442.716685 883.418816 -0.75725 -0.00033525 0.76584 0.00033905 0.0085933 3.8044E-06 442.71703451642475 40.962 0.090813 44.2 44.182 44.272 3.2372 0.19074 1.0694E-05 NaN 12.532 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 49393 28926 16330 18296 18307 -0.027556303421874873 NPHGLPLSY 9 Unmodified _NPHGLPLSY_ 0 0 0 HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|27|2|sense HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|27|2|sense HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 499.2588195800781 2 499.258717 996.50288 NaN NaN NaN NaN NaN NaN NaN 46.975 1 46.975 46.475 47.475 0 0 0 0 0.2408 1 9674 9674 13.906 0 1 28927 8022 18297 18308 33485 33485 0.0044890075471357704 NPIIYPLFM 9 Unmodified _NPIIYPLFM_ 0 0 0 ENSG00000158748|ENST00000289753|HTR6 ENSG00000158748|ENST00000289753|HTR6 ENSG00000158748|ENST00000289753|HTR6 MSMS UPN46_class_I_Rep_3 1 554.2996215820312 2 554.298996 1106.58344 NaN NaN NaN NaN NaN NaN NaN 36.722 1 36.722 36.222 37.222 0 0 0 0 0.39428 1 6837 6837 2.0598 0.73022 1 28928 3810 18298 18309 33486 33486 0.0344104575340225 NPIYWYEY 8 Unmodified _NPIYWYEY_ 0 0 0 L1PA16_dup2554|chr3:111659629-111660955:+|2.0931319421040566|0.0942486353811044|4.47|146.0|78|2|anti-sense L1PA16_dup2554|chr3:111659629-111660955:+|2.0931319421040566|0.0942486353811044|4.47|146.0|78|2|anti-sense L1PA16_dup2554|chr3:111659629-111660955:+|2.0931319421040566|0.0942486353811044|4.47|146.0|78|2|anti-sense MSMS UPN48_class_I_Rep_2 6 574.3203125 2 574.258382 1146.50221 NaN NaN NaN NaN NaN NaN NaN 96.824 1 100.6 100.1 101.1 3.7804 0 0 0 0.40746 1 23007 23007 0.69038 0 1 28929 14072 18299 18310 33487 33487 -0.06517938685010449 NPKIKDIL 8 Unmodified _NPKIKDIL_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS UPN47_class_I_Rep_1 2 470.7945556640625 2 470.794935 939.575317 -0.31312 -0.00014742 -0.32219 -0.00015168 -0.63531 -0.0002991 470.79479410062976 37.442 1.1937 41.108 40.687 41.881 3.6652 232 90 3 0 0 0 0.82752 5 7053 7053;7090;7134;7176;7220 78.728 3.8969 1 410080 28930 4910 18300 18311 33488;33489;33490;33491;33492 33488 0.10311234828270699 NPKIKDIL 8 Unmodified _NPKIKDIL_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS UPN47_class_I_Rep_2 3 470.79461669921875 2 470.794935 939.575317 -0.32743 -0.00015415 -0.70999 -0.00033426 -1.0374 -0.00048841 470.79477345052027 37.847 1.2517 41.235 40.748 42 3.3879 234 100 3 0 0 0 0.82752 6 7197 7197;7233;7271;7309;7352;7388 75.761 3.8892 1 469690 28931 4910 18300 18311 33493;33494;33495;33496;33497;33498 33493 0.10311234828270699 NPKIKDIL 8 Unmodified _NPKIKDIL_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS UPN47_class_I_Rep_3 4 470.7945861816406 2 470.794935 939.575317 -0.52259 -0.00024603 -0.32399 -0.00015253 -0.84658 -0.00039856 470.7948347684566 38.082 1.3075 41.323 40.839 42.146 3.2414 237 98 3 0 0 0 0.82752 5 7305 7305;7341;7379;7420;7464 85.642 13.719 1 397470 28932 4910 18300 18311 33499;33500;33501;33502;33503 33499 0.10311234828270699 NPKRNRHANA 10 Unmodified _NPKRNRHANA_ 0 0 0 REV__L1PA7_dup7197|chr9:14599777-14602159:+|1.7236013421217269|0.240684255869607|2.84|151.0|30|1|sense REV__L1PA7_dup7197|chr9:14599777-14602159:+|1.7236013421217269|0.240684255869607|2.84|151.0|30|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.3182373046875 2 589.318494 1176.62244 0.14763 8.7003E-05 1.2063 0.00071088 1.3539 0.00079788 589.3191313533034 46.61 0.40604 50.31 50.241 50.647 3.6999 43 25 2 0 0 0 0.56333 1 9909 9909 1.4819 0.28856 1 88686 + 28933 30155 18301 18312 33504 33504 0.04118907151996609 NPLDSSLSKK 10 Unmodified _NPLDSSLSKK_ 0 0 0 REV__L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|9|1|sense REV__L1PBa_dup222|chr2:121669434-121671080:+|2.5551435593841707|0.0903651052247915|4.82|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 544.8020629882812 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 16.606 1 20.127 19.627 20.627 3.5217 0 0 0 0.53105 1 841 841 1.1933 0 1 + 28934 30648 18302 18313 33505 33505 0.04704806780819126 NPLEDRGTAE 10 Unmodified _NPLEDRGTAE_ 0 0 0 ENST00000497227.1_1_6:25466074-25472787:+|nuORF ENST00000497227.1_1_6:25466074-25472787:+|nuORF ENST00000497227.1_1_6:25466074-25472787:+|nuORF MSMS UPN46_class_I_Rep_3 1 551.26220703125 2 551.262185 1100.50982 NaN NaN NaN NaN NaN NaN NaN 101.83 1 101.83 101.33 102.33 0 0 0 0 0.53105 1 24845 24845 1.3295 0.63916 1 28935 7107 18303 18314 33506 33506 -0.03641831155368891 NPLKKKKRQKI 11 Unmodified _NPLKKKKRQKI_ 0 0 0 L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|27|3|sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|27|3|sense L1ME1_dup12075|chr6:108610862-108611921:-|1.0259167765159622|0.0295177139805543|5.12|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 460.7826232910156 3 460.976906 1379.90889 NaN NaN NaN NaN NaN NaN NaN 39.442 1 39.442 38.942 39.942 0 0 0 0 0.38417 1 7580 7580 0.08335 0 1 28936 12189 18304 18315 33507 33507 0.23412948601594508 NPLMWIMA 8 Unmodified _NPLMWIMA_ 0 0 0 REV__ENST00000260323.15_1_15:54435829-54528631:+|nuORF REV__ENST00000260323.15_1_15:54435829-54528631:+|nuORF MSMS UPN48_class_I_Rep_1 5 488.24249267578125 2 488.243166 974.47178 NaN NaN NaN NaN NaN NaN NaN 27.081 1 30.644 30.144 31.144 3.5629 0 0 0 0.40604 1 3431 3431 2.5775 0 1 + 28937 21550 18305 18316 33508 33508 -0.016477118753982722 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN47_class_I_Rep_1 2 481.6176452636719 3 481.617489 1441.83064 0.24846 0.00011966 0.43896 0.00021141 0.68741 0.00033107 481.61776090007027 94.186 0.26833 97.937 97.754 98.023 3.7508 41 33 2 0 0 0 0.68081 1 23421 23421 0.45452 0.046251 1 140240 + 28938 19779 18306 18317 33509 33509 0.1273951601635872 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MULTI-SECPEP UPN47_class_I_Rep_3 4 481.3372802734375 3 481.617489 1441.83064 0.16109 7.7583E-05 0.82856 0.00039905 0.98965 0.00047663 481.61775991159436 94.947 0.18567 98.354 98.298 98.484 3.4068 36 26 2 0 0 0 22.551 1 23635 23635 0.50596 0.051438 1 150750 + 28939 19779 18306 18317 33510 33510 0.1273951601635872 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MULTI-SECPEP UPN47_class_I_Rep_3 4 481.3372802734375 3 481.617489 1441.83064 0.16148 7.7772E-05 1.0108 0.00048684 1.1723 0.00056461 481.6178237239216 95.088 0.17232 98.497 98.396 98.568 3.4095 26 23 2 0 0 0 22.551 1 23635 23635 0.50596 0 1 158390 + 28940 19779 18306 18317 33511 33511 0.1273951601635872 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MSMS UPN48_class_I_Rep_1 5 481.61798095703125 3 481.617489 1441.83064 NaN NaN NaN NaN NaN NaN NaN 95.099 1 98.716 98.216 99.216 3.6167 0 0 0 0.38417 1 22895 22895 0.50596 0 1 + 28941 19779 18306 18317 33512 33512 0.1273951601635872 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MULTI-MATCH UPN46_class_I_Rep_3 1 3 481.617489 1441.83064 0.27085 0.00013044 0.82139 0.0003956 1.0922 0.00052604 481.6179117720308 97.702 0.029968 97.702 97.683 97.713 0 -0.11743 4.0362E-05 NaN 0.45452 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 68235 + 28942 19779 18306 18317 0.1273951601635872 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MULTI-MATCH UPN47_class_I_Rep_1 2 3 481.617489 1441.83064 0.24843 0.00011965 0.43541 0.0002097 0.68385 0.00032935 481.617673812408 95.02 0.077896 98.77 98.714 98.792 3.7508 0.055027 -0.00064762 NaN 0.50596 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 137640 + 28943 19779 18306 18317 0.1273951601635872 NPLRFIRYHKV 11 Unmodified _NPLRFIRYHKV_ 0 0 0 REV__ENSG00000155926|ENST00000338087|SLA REV__ENSG00000155926|ENST00000338087|SLA MULTI-MATCH UPN48_class_I_Rep_2 6 3 481.617489 1441.83064 0.23844 0.00011484 0.99467 0.00047905 1.2331 0.00059389 481.6179606339138 95.098 0.21397 98.878 98.809 99.023 3.7804 0.16295 0.00016042 NaN 0.50596 34 29 2 NaN NaN NaN NaN 0 NaN NaN 0 105200 + 28944 19779 18306 18317 0.1273951601635872 NPLYCDCNMQ 10 Unmodified _NPLYCDCNMQ_ 0 0 0 nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2 nc|ENSG00000145147|O94813-3|SLIT2 nc|ENSG00000145147|O94813-3|SLIT2 MSMS UPN47_class_I_Rep_1 2 600.7303466796875 2 600.727751 1199.44095 NaN NaN NaN NaN NaN NaN NaN 111.25 1 114.82 114.32 115.32 3.572 0 0 0 0.53105 1 27435 27435 1.3295 0.25807 1 28945 3384 18307 18318 33513 33513 -0.1507927804261726 NPMTFICRY 9 Unmodified _NPMTFICRY_ 0 0 0 REV__AluJr_dup71377|chr17:30713990-30714291:+|1.2568783509414885|0.0091903319937772|7.1|151.0|15|1|anti-sense REV__AluJr_dup71377|chr17:30713990-30714291:+|1.2568783509414885|0.0091903319937772|7.1|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.7664794921875 2 572.767537 1143.52052 -0.048691 -2.7889E-05 -0.82182 -0.00047071 -0.87051 -0.0004986 572.7670603408924 39.433 0.64491 43.099 42.69 43.335 3.6668 69 45 2 0 0 0 0.47197 1 7667 7667 3.5965 0.31518 1 107540 + 28946 17053 18308 18319 33514 33514 -0.04549843306290313 NPNQYLKTF 9 Unmodified _NPNQYLKTF_ 0 0 0 L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|20|3|sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|20|3|sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|20|3|sense MSMS UPN48_class_I_Rep_1 5 562.7927856445312 2 562.790381 1123.56621 NaN NaN NaN NaN NaN NaN NaN 71.772 1 75.238 74.738 75.738 3.466 0 0 0 0.37891 1 16804 16804 5.7319 0.43497 1 28947 12679 18309 18320 33515 33515 0.009368414719347129 NPNQYPVYY 9 Unmodified _NPNQYPVYY_ 0 0 0 L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.266357421875 2 579.266739 1156.51892 0.31791 0.00018416 -0.47138 -0.00027306 -0.15347 -8.8902E-05 579.2665139317919 54.241 0.74242 57.742 57.531 58.273 3.5014 48 37 2 0 0 0 0.23311 1 12289 12289 18.135 2.2878 1 99353 28948 13000 18310 18321 33516 33516 -0.05307437799046966 NPNQYPVYY 9 Unmodified _NPNQYPVYY_ 0 0 0 L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 579.2664184570312 2 579.266739 1156.51892 0.51728 0.00029965 -0.47626 -0.00027588 0.041022 2.3762E-05 579.2664249240777 54.537 0.62575 57.856 57.628 58.254 3.3187 45 29 2 0 0 0 0.15878 1 12394 12394 24.674 3.8027 1 96853 28949 13000 18310 18321 33517 33517 -0.05307437799046966 NPNQYPVYY 9 Unmodified _NPNQYPVYY_ 0 0 0 L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.2667236328125 2 579.266739 1156.51892 0.445 0.00025777 -0.5157 -0.00029873 -0.0707 -4.0954E-05 579.2667815340723 54.792 0.76915 57.978 57.611 58.38 3.1856 65 44 2 0 0 0 0.23311 1 12471 12471 18.135 2.2878 1 124120 28950 13000 18310 18321 33518 33518 -0.05307437799046966 NPPGAPPEVEP 11 Unmodified _NPPGAPPEVEP_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 552.2720336914062 2 552.272021 1102.52949 0.090774 5.0132E-05 -0.21063 -0.00011633 -0.11986 -6.6193E-05 552.2718100774707 43.719 1.041 47.414 46.951 47.992 3.6951 121 60 3 0 0 0 0.61292 1 9113 9113 4.897 4.897 1 283880 28951 3039 18311 18322 33519 33519 -0.0176745514461345 NPPGAPPEVEP 11 Unmodified _NPPGAPPEVEP_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 552.2713012695312 2 552.272021 1102.52949 0.1741 9.6152E-05 -0.048277 -2.6662E-05 0.12582 6.9489E-05 552.2718516323188 44.137 1.04 47.381 47.01 48.05 3.2441 131 58 3 0 0 0 0.65559 1 9376 9376 2.7352 2.7352 1 230310 28952 3039 18311 18322 33520 33520 -0.0176745514461345 NPQRQIYRV 9 Unmodified _NPQRQIYRV_ 0 0 0 REV__L1MEf_dup3293|chr5:10739821-10740961:+|1.481093716842366|0.0807910988359548|4.2|151.0|8|1|sense REV__L1MEf_dup3293|chr5:10739821-10740961:+|1.481093716842366|0.0807910988359548|4.2|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 587.3274536132812 2 587.327996 1172.64144 NaN NaN NaN NaN NaN NaN NaN 65.098 1 65.098 64.598 65.598 0 0 0 0 0.39428 1 14697 14697 2.0598 0 1 + 28953 28627 18312 18323 33521 33521 0.0620244372300931 NPRCCRVH 8 Unmodified _NPRCCRVH_ 0 0 0 MER45C_dup579|chr7:140004655-140005148:-|1.5136158055940852|0.0141042207877239|6.75|151.0|14|1|anti-sense MER45C_dup579|chr7:140004655-140005148:-|1.5136158055940852|0.0141042207877239|6.75|151.0|14|1|anti-sense MER45C_dup579|chr7:140004655-140005148:-|1.5136158055940852|0.0141042207877239|6.75|151.0|14|1|anti-sense MSMS UPN48_class_I_Rep_1 5 492.7352600097656 2 492.734363 983.454173 NaN NaN NaN NaN NaN NaN NaN 66.393 1 69.844 69.344 70.344 3.4516 0 0 0 0.40625 1 15179 15179 2.3027 0 1 28954 15995 18313 18324 33522 33522 -0.03821614357684666 NPRRKARL 8 Unmodified _NPRRKARL_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|110|2|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|110|2|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|110|2|sense MSMS UPN46_class_I_Rep_3 1 505.8184509277344 2 505.820141 1009.62573 NaN NaN NaN NaN NaN NaN NaN 108.44 1 108.44 107.94 108.94 0 0 0 0 0.39819 1 26519 26519 8.5933 0 1 28955 13691 18314 18325 33523 33523 0.1213020199663788 NPRVKAAAL 9 Unmodified _NPRVKAAAL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS UPN47_class_I_Rep_1 2 470.29022216796875 2 470.290351 938.566149 -0.37121 -0.00017458 -0.11427 -5.3742E-05 -0.48548 -0.00022832 470.2901569916425 22.085 0.79638 25.76 25.467 26.263 3.6749 143 76 2 0 0 0 0.28552 3 2478 2478;2511;2550 14.838 4.0143 1 161680 28956 1343 18315 18326 33524;33525;33526 33524 0.09440886262598269 NPRVKAAAL 9 Unmodified _NPRVKAAAL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS UPN47_class_I_Rep_2 3 470.2899475097656 2 470.290351 938.566149 -0.33238 -0.00015631 -0.16377 -7.702E-05 -0.49615 -0.00023333 470.2901136904635 22.522 0.8254 25.966 25.586 26.411 3.4447 148 79 2 0 0 0 0.12799 2 2645 2607;2645 28.487 5.3384 1 202350 28957 1343 18315 18326 33527;33528 33528 0.09440886262598269 NPRVKAAAL 9 Unmodified _NPRVKAAAL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS UPN47_class_I_Rep_3 4 470.2899475097656 2 470.290351 938.566149 -0.76127 -0.00035802 0.3602 0.0001694 -0.40107 -0.00018862 470.29030710969914 22.699 0.85733 26.05 25.74 26.598 3.3503 134 74 2 0 0 0 0.09884 4 2778 2742;2778;2817;2850 34.102 5.6156 1 150100 28958 1343 18315 18326 33529;33530;33531;33532 33530 0.09440886262598269 NPRWTVID 8 Unmodified _NPRWTVID_ 0 0 0 REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|82|1|anti-sense REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|82|1|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7661437988281 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 22.083 1 25.729 25.229 26.229 3.6459 0 0 0 0.40643 1 2198 2198 2.0598 1.2661 1 + 28959 23728 18316 18327 33533 33533 0.01400303128991709 NPSLPKRSLPM 11 Unmodified _NPSLPKRSLPM_ 0 0 0 REV__L1MC5_dup10142|chr11:73710907-73712012:-|1.9592848728958467|0.0975544883578474|4.33|151.0|24|2|sense REV__L1MC5_dup10142|chr11:73710907-73712012:-|1.9592848728958467|0.0975544883578474|4.33|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 620.3469848632812 2 620.34754 1238.68053 NaN NaN NaN NaN NaN NaN NaN 68.678 1 72.13 71.63 72.63 3.4517 0 0 0 0.38417 1 15875 15875 2.9952 0 1 + 28960 27049 18317 18328 33534 33534 0.07073407962388956 NPSQSDEFYF 10 Unmodified _NPSQSDEFYF_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|88|2|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|88|2|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|88|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 617.2568969726562 2 617.256568 1232.49858 0.47452 0.0002929 -0.23426 -0.0001446 0.24025 0.0001483 617.2564058180419 79.31 0.50126 82.605 82.371 82.872 3.295 71 43 2 0 0 0 0.56078 1 19784 19784 3.2813 3.2813 1 128660 28961 14158 18318 18329 33535 33535 -0.10836653249521078 NPTEDVEYQ 9 Unmodified _NPTEDVEYQ_ 0 0 0 nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1 nc|ENSG00000261371|P16284-5|PECAM1 nc|ENSG00000261371|P16284-5|PECAM1 MSMS UPN48_class_I_Rep_1 5 547.7359619140625 2 547.735468 1093.45638 NaN NaN NaN NaN NaN NaN NaN 19.255 1 22.793 22.293 23.293 3.5378 0 0 0 0.39598 1 1428 1428 1.6526 0 1 28962 5786 18319 18330 33536 33536 -0.08660628657912639 NPTPVVKVF 9 Unmodified _NPTPVVKVF_ 0 0 0 REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1 REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1 MSMS UPN48_class_I_Rep_1 5 500.79736328125 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 85.266 1 88.872 88.372 89.372 3.6059 0 0 0 0.38478 1 20389 20389 4.3292 0 1 + 28963 18306 18320 18331 33537 33537 0.07551234828292763 NPVFSPDEAL 10 Unmodified _NPVFSPDEAL_ 0 0 0 nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 MSMS UPN47_class_I_Rep_2 3 544.7640991210938 2 544.766571 1087.51859 NaN NaN NaN NaN NaN NaN NaN 41.439 1 44.805 44.305 45.305 3.3655 0 0 0 0.53105 1 8352 8352 3.2813 0.70383 1 28964 1017 18321 18332 33538 33538 -0.021668575189096373 NPVLWPLWT 9 Unmodified _NPVLWPLWT_ 0 0 0 REV__L1ME3_dup9025|chr22:24382080-24382356:+|1.123063408379767|0.0151825562300683|6.21|151.0|16|2|anti-sense REV__L1ME3_dup9025|chr22:24382080-24382356:+|1.123063408379767|0.0151825562300683|6.21|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_2 3 563.3062744140625 2 563.30821 1124.60187 NaN NaN NaN NaN NaN NaN NaN 49.56 1 52.903 52.403 53.403 3.3431 0 0 0 0.39518 1 10816 10816 1.8442 0.36234 1 + 28965 27974 18322 18333 33539 33539 0.04454923719595172 NPVRQKRKNR 10 Unmodified _NPVRQKRKNR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 432.88507080078125 3 432.597088 1294.76943 0.093802 4.0578E-05 0.83374 0.00036068 0.92755 0.00040125 432.59735699318173 100.73 0.2125 104.48 104.4 104.61 3.7417 48 30 2 0 0 0 0.84575 1 23922 23922 0.69767 0.69767 1 135140 28966 9842 18323 18334 33540 33540 0.13384004036925035 NPVRQKRKNR 10 Unmodified _NPVRQKRKNR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 432.8850402832031 3 432.597088 1294.76943 0.13267 5.7392E-05 0.90648 0.00039214 1.0391 0.00044953 432.5974810310104 101.66 0.10669 105.48 105.44 105.55 3.8153 24 14 3 0 0 0 0.84575 1 24038 24038 0.69767 0.19171 1 261930 28967 9842 18323 18334 33541 33541 0.13384004036925035 NPVRQKRKNR 10 Unmodified _NPVRQKRKNR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 432.597088 1294.76943 0.13927 6.0246E-05 0.9067 0.00039223 1.046 0.00045248 432.59738557388187 104.44 0.16632 104.44 104.39 104.55 0 -0.062994 0.00015947 NaN 0.69767 30 23 2 NaN NaN NaN NaN 0 NaN NaN 0 262520 28968 9842 18323 18334 0.13384004036925035 NPVRQKRKNR 10 Unmodified _NPVRQKRKNR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 432.597088 1294.76943 0.13863 5.9973E-05 0.60299 0.00026085 0.74163 0.00032083 432.59721187632204 100.68 0.23291 104.47 104.42 104.65 3.7942 -0.025421 -0.00023468 NaN 0.69767 57 34 2 NaN NaN NaN NaN 0 NaN NaN 0 184160 28969 9842 18323 18334 0.13384004036925035 NPVRQKRKNR 10 Unmodified _NPVRQKRKNR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 432.597088 1294.76943 -0.21262 -9.1977E-05 0.62357 0.00026975 0.41095 0.00017778 432.9315554872001 100.91 0.1161 104.42 104.36 104.47 3.5063 -0.084923 -0.00020798 NaN 0.69767 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 107180 28970 9842 18323 18334 0.13384004036925035 NPVRQKRKNR 10 Unmodified _NPVRQKRKNR_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|19|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 432.597088 1294.76943 -0.37941 -0.00016413 1.2684 0.00054869 0.88896 0.00038456 432.5977004409344 101.06 0.082993 104.53 104.5 104.58 3.4671 0.030155 0.00062884 NaN 0.69767 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 90027 28971 9842 18323 18334 0.13384004036925035 NPVYAHAIDE 10 Unmodified _NPVYAHAIDE_ 0 0 0 REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|266|2|anti-sense REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|266|2|anti-sense MSMS UPN47_class_I_Rep_1 2 564.7697143554688 2 564.769645 1127.52474 NaN NaN NaN NaN NaN NaN NaN 35.077 1 38.763 38.263 39.263 3.6859 0 0 0 0.53105 1 6391 6391 1.4819 0 1 + 28972 30067 18324 18335 33542 33542 -0.03392339287370305 NPWYREEEP 9 Unmodified _NPWYREEEP_ 0 0 0 L1MEc_dup15533|chr15:30760351-30760964:+|1.0010041562544485|0.0250104347445521|5.32|151.0|11|2|sense L1MEc_dup15533|chr15:30760351-30760964:+|1.0010041562544485|0.0250104347445521|5.32|151.0|11|2|sense L1MEc_dup15533|chr15:30760351-30760964:+|1.0010041562544485|0.0250104347445521|5.32|151.0|11|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 406.73480224609375 3 407.184127 1218.53055 -0.49614 -0.00020202 -0.1277 -5.1998E-05 -0.62384 -0.00025402 407.18426722851467 23.284 1.2751 26.989 26.647 27.923 3.7042 244 110 3 0 0 0 0.12516 1 3010 3010 1.0715 0 1 316050 28973 13034 18325 18336 33543 33543 -0.06997240775717728 NPYPLASLKM 10 Unmodified _NPYPLASLKM_ 0 0 0 ENST00000376062.6_1_20:30253395-30253500:-|nuORF ENST00000376062.6_1_20:30253395-30253500:-|nuORF ENST00000376062.6_1_20:30253395-30253500:-|nuORF MSMS UPN46_class_I_Rep_3 1 566.9893798828125 2 567.30481 1132.59507 NaN NaN NaN NaN NaN NaN NaN 105.31 1 105.31 104.81 105.81 0 0 0 0 0.53105 1 25690 25690 1.4819 0 1 28974 6448 18326 18337 33544 33544 0.03407242776734165 NQAGIYLVF 9 Unmodified _NQAGIYLVF_ 0 0 0 REV__Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|6|1|sense REV__Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 512.7763671875 2 512.776742 1023.53893 0.32144 0.00016483 -0.35717 -0.00018315 -0.035734 -1.8324E-05 512.7763440722423 76.035 0.29217 79.637 79.542 79.834 3.6011 67 37 2 0 0 0 0.17468 1 17944 17944 23.148 0.41214 1 116100 + 28975 17287 18327 18338 33545 33545 0.028103579315711613 NQAGIYLVF 9 Unmodified _NQAGIYLVF_ 0 0 0 REV__Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|6|1|sense REV__Charlie15b_dup1398|chr12:115974565-115975021:+|1.400772795975445|0.3047678189497226|2.2|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 512.7765502929688 2 512.776742 1023.53893 0.3557 0.0001824 -0.14535 -7.4535E-05 0.21035 0.00010786 512.7766422519037 76.118 0.19037 79.701 79.602 79.792 3.5831 31 18 2 0 0 0 0.17468 1 17909 17909 23.148 0.41214 1 90695 + 28976 17287 18327 18338 33546 33546 0.028103579315711613 NQAPFPLQVR 10 Unmodified _NQAPFPLQVR_ 0 0 0 ENST00000471413.1_1_1:156212316-156212582:+|nuORF ENST00000471413.1_1_1:156212316-156212582:+|nuORF ENST00000471413.1_1_1:156212316-156212582:+|nuORF MSMS UPN46_class_I_Rep_3 1 585.324462890625 2 585.324922 1168.63529 NaN NaN NaN NaN NaN NaN NaN 80.442 1 80.442 79.942 80.942 0 0 0 0 0.53105 1 18949 18949 1.4819 0.15237 1 28977 6926 18328 18339 33547 33547 0.05771925491512775 NQCNTQKHQ 9 Unmodified _NQCNTQKHQ_ 0 0 0 REV__L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|9|1|sense REV__L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 550.7476806640625 2 550.748721 1099.48289 NaN NaN NaN NaN NaN NaN NaN 116.92 1 120.52 120.02 121.02 3.6036 0 0 0 0.39428 1 28969 28969 2.0598 0 1 + 28978 25588 18329 18340 33548 33548 -0.06287218247575765 NQDGIAYY 8 Unmodified _NQDGIAYY_ 0 0 0 Tigger3a_dup1469|chr4:102636249-102636505:-|2.313596283916575|0.2685983408379097|3.11|151.0|13|1|anti-sense Tigger3a_dup1469|chr4:102636249-102636505:-|2.313596283916575|0.2685983408379097|3.11|151.0|13|1|anti-sense Tigger3a_dup1469|chr4:102636249-102636505:-|2.313596283916575|0.2685983408379097|3.11|151.0|13|1|anti-sense MSMS UPN46_class_I_Rep_3 1 472.287841796875 2 472.211432 942.408311 NaN NaN NaN NaN NaN NaN NaN 99.226 1 99.226 98.726 99.726 0 0 0 0 0.40738 1 24168 24168 0.79363 0 1 28979 33354 18330 18341 33549 33549 -0.06519657787293909 NQDRPSLL 8 Unmodified _NQDRPSLL_ 0 0 0 ENST00000559020.1_1_1:150940136-150940936:-|nuORF;ENSG00000143418|ENST00000368954|CERS2 ENST00000559020.1_1_1:150940136-150940936:-|nuORF ENST00000559020.1_1_1:150940136-150940936:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 471.7528991699219 2 471.753798 941.493044 -0.31958 -0.00015076 -0.16728 -7.8916E-05 -0.48687 -0.00022968 471.75375749068513 35.291 0.1973 38.967 38.834 39.032 3.6762 17 14 2 0 0 0 0.82752 1 6458 6458 6.2058 1.4498 1 64121 28980 3297 18331 18342 33550 33550 0.019957127493285043 NQDRPSLL 8 Unmodified _NQDRPSLL_ 0 0 0 ENST00000559020.1_1_1:150940136-150940936:-|nuORF;ENSG00000143418|ENST00000368954|CERS2 ENST00000559020.1_1_1:150940136-150940936:-|nuORF ENST00000559020.1_1_1:150940136-150940936:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 471.7536315917969 2 471.753798 941.493044 -0.31759 -0.00014982 0.089698 4.2315E-05 -0.22789 -0.00010751 471.7537805925497 35.601 0.52868 39.012 38.823 39.352 3.4114 45 33 2 0 0 0 0.82752 1 6588 6588 6.2058 2.2614 1 57967 28981 3297 18331 18342 33551 33551 0.019957127493285043 NQDRPSLL 8 Unmodified _NQDRPSLL_ 0 0 0 ENST00000559020.1_1_1:150940136-150940936:-|nuORF;ENSG00000143418|ENST00000368954|CERS2 ENST00000559020.1_1_1:150940136-150940936:-|nuORF ENST00000559020.1_1_1:150940136-150940936:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 471.7537536621094 2 471.753798 941.493044 -0.54749 -0.00025828 0.39717 0.00018737 -0.15032 -7.0914E-05 471.7539468660778 35.851 0.47765 39.106 38.848 39.326 3.2547 44 30 2 0 0 0 0.82752 1 6651 6651 6.2058 2.2614 1 65380 28982 3297 18331 18342 33552 33552 0.019957127493285043 NQENEGNDVPD 11 Unmodified _NQENEGNDVPD_ 0 0 0 nc|ENSG00000198625|O15151-4|MDM4 nc|ENSG00000198625|O15151-4|MDM4 nc|ENSG00000198625|O15151-4|MDM4 MSMS UPN47_class_I_Rep_1 2 615.7450561523438 2 615.747096 1229.47964 NaN NaN NaN NaN NaN NaN NaN 23.52 1 27.225 26.725 27.725 3.7042 0 0 0 0.38417 1 2921 2921 2.4985 0.84587 1 28983 16802 18332 18343 33553 33553 -0.1259223461122474 NQESYGQLITQ 11 Unmodified _NQESYGQLITQ_ 0 0 0 REV__L1PA14_dup2200|chr10:20263044-20264471:+|1.3377279755372773|0.0512824477646913|4.71|149.0|2|1|sense REV__L1PA14_dup2200|chr10:20263044-20264471:+|1.3377279755372773|0.0512824477646913|4.71|149.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 640.8110961914062 2 640.809499 1279.60444 NaN NaN NaN NaN NaN NaN NaN 81.602 1 85.115 84.615 85.615 3.5122 0 0 0 0.38417 1 20366 20366 0.96228 0.36078 1 + 28984 29149 18333 18344 33554 33554 -0.024173174040470258 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 533.271484375 2 533.271824 1064.5291 0.26203 0.00013974 -0.43624 -0.00023264 -0.17421 -9.2902E-05 533.2714385512443 54.447 0.55817 54.447 54.188 54.746 0 120 61 3 0 0 0 0.0094161 2 11801 11763;11801 70.332 39.695 1 436400 28985 1173 18334 18345 33555;33556 33556 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 533.2717895507812 2 533.271824 1064.5291 0.1842 9.8231E-05 -0.36509 -0.00019469 -0.18089 -9.6462E-05 533.2716943591237 48.77 0.89053 52.452 52.103 52.993 3.6819 161 61 4 0 0 0 0.033731 3 10542 10502;10542;10621 55.503 27.016 1 397140 28986 1173 18334 18345 33557;33558;33559 33558 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 533.2716674804688 2 533.271824 1064.5291 0.27595 0.00014716 -0.21008 -0.00011203 0.065865 3.5124E-05 533.271709676122 49.106 0.99079 52.453 52.1 53.091 3.3465 150 66 3 0 0 0 0.062142 3 10672 10632;10672;10713 43.772 24.392 1 337230 28987 1173 18334 18345 33560;33561;33562 33561 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA ENST00000407763.2_1_6:149433147-149433330:-|nuORF ENST00000407763.2_1_6:149433147-149433330:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 533.2718505859375 2 533.271824 1064.5291 0.40618 0.0002166 -0.56467 -0.00030112 -0.15849 -8.452E-05 533.2716947991735 49.278 0.94302 52.513 52.107 53.05 3.2345 154 56 4 0 0 0 0.053261 4 10768 10724;10768;10812;10857 47.594 25.848 1 317570 28988 1173 18334 18345 33563;33564;33565;33566 33564 -0.0005883007379452465 NQFQALLQY 9 Unmodified _NQFQALLQY_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENSG00000117569.19,PTBP2,chr1,+,I10.1,96785255,96804784|101|11.29|3|intron;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;ENSG00000117569.19,PTBP2,chr1,+,I10.1,96785255,96804784|101|11.29|2|intron;ENSG00000117569.19,PTBP2,chr1,+,I9.1,96777947,96784947|79|9.76|4|intron;ENSG00000117569.19,PTBP2,chr1,+,I9.1,96777947,96784947|79|9.76|2|intron;ENSG00000117569.19,PTBP2,chr1,+,I10.1,96785255,96804784|101|11.29|1|intron;ENSG00000117569.19,PTBP2,chr1,+,I9.1,96777947,96784947|79|9.76|1|intron;ENSG00000117569.19,PTBP2,chr1,+,I9.1,96777947,96784947|79|9.76|3|intron;ENSG00000117569.19,PTBP2,chr1,+,I10.1,96785255,96804784|101|11.29|4|intron;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3 ENSG00000011304|ENST00000356948|PTBP1;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000119314|O95758-7|PTBP3 ENSG00000011304|ENST00000356948|PTBP1 MSMS UPN46_class_I_Rep_3 1 562.7911376953125 2 562.790381 1123.56621 NaN NaN NaN NaN NaN NaN NaN 77.552 1 77.552 77.052 78.052 0 0 0 0 5.4527E-11 1 18133 18133 81.89 21.501 1 28989 772;2225;2277 18335 18346 33567 33567 0.009368414719574503 NQHFHHYLY 9 Unmodified _NQHFHHYLY_ 0 0 0 REV__ENST00000551631.6_2_15:25245515-25246630:+|nuORF REV__ENST00000551631.6_2_15:25245515-25246630:+|nuORF MSMS UPN48_class_I_Rep_3 7 629.7911987304688 2 629.791247 1257.56794 NaN NaN NaN NaN NaN NaN NaN 62.355 1 65.866 65.366 66.366 3.5104 0 0 0 0.40038 1 13855 13855 0.6015 0 1 + 28990 22960 18336 18347 33568 33568 -0.05054104719420138 NQHLHNWLY 9 Unmodified _NQHLHNWLY_ 0 0 0 REV__ENSG00000108375.13,RNF43,chr17,-,I6.1,58360945,58362543|58|7.0|4|intron REV__ENSG00000108375.13,RNF43,chr17,-,I6.1,58360945,58362543|58|7.0|4|intron MULTI-MSMS UPN47_class_I_Rep_1 2 613.300048828125 2 612.799072 1223.58359 0.31083 0.00019047 -0.9256 -0.00056721 -0.61477 -0.00037673 612.7982873260779 51.296 1.0377 54.889 54.477 55.515 3.5933 106 51 3 0 0 0 0.25207 2 11382 11382;11400 16.942 1.6938 1 318790 + 28991 18379 18337 18348 33569;33570 33569 -0.019258182023804693 NQHRPRVF 8 Unmodified _NQHRPRVF_ 0 0 0 REV__nc|ENSG00000162949|Q6MZZ7-2|CAPN13 REV__nc|ENSG00000162949|Q6MZZ7-2|CAPN13 MSMS UPN48_class_I_Rep_2 6 527.289794921875 2 527.288674 1052.5628 NaN NaN NaN NaN NaN NaN NaN 63.662 1 67.136 66.636 67.636 3.4743 0 0 0 0.39819 1 14332 14332 8.5933 0.43775 1 + 28992 19953 18338 18349 33571 33571 0.038616362086031586 NQHTLIFD 8 Unmodified _NQHTLIFD_ 0 0 0 nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2 nc|ENSG00000005882|Q15119-2|PDK2 nc|ENSG00000005882|Q15119-2|PDK2 MSMS UPN48_class_I_Rep_2 6 494.249267578125 2 494.248349 986.482145 NaN NaN NaN NaN NaN NaN NaN 61.544 1 65.018 64.518 65.518 3.4738 0 0 0 0.40625 1 13680 13680 2.3027 0 1 28993 706 18339 18350 33572 33572 -0.011636896249569872 NQIESKAAY 9 Unmodified _NQIESKAAY_ 0 0 0 nc|ENSG00000102226|P51784|USP11;ENSG00000102226|ENST00000377107|USP11 nc|ENSG00000102226|P51784|USP11 nc|ENSG00000102226|P51784|USP11 MULTI-MSMS UPN46_class_I_Rep_3 1 512.2596435546875 2 512.258914 1022.50327 0.018349 9.3994E-06 -0.0018163 -9.3043E-07 0.016533 8.469E-06 512.2588213320962 28.193 0.28383 28.193 27.973 28.256 0 34 21 2 0 0 0 0.38714 1 4279 4279 8.7454 0 1 68163 28994 1607 18340 18351 33573 33573 -0.00707724316112035 NQIYTQLPI 9 Unmodified _NQIYTQLPI_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-SECPEP UPN47_class_I_Rep_2 3 544.839599609375 2 545.300581 1088.58661 0.3681 0.00020072 0.36251 0.00019768 0.73061 0.0003984 545.8024781372914 68.95 0.29106 72.22 72.066 72.357 3.2696 32 23 2 0 0 0 0.12251 1 16723 16723 2.7352 0 1 94494 28995 5633 18341 18352 33574 33574 0.045860121317673475 NQKKPRIRQ 9 Unmodified _NQKKPRIRQ_ 0 0 0 L1PA3_dup1389|chr2:187506910-187509816:-|1.480124824649612|0.3385004987982422|2.13|149.0|31|2|sense L1PA3_dup1389|chr2:187506910-187509816:-|1.480124824649612|0.3385004987982422|2.13|149.0|31|2|sense L1PA3_dup1389|chr2:187506910-187509816:-|1.480124824649612|0.3385004987982422|2.13|149.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 584.3558959960938 2 584.357088 1166.69962 NaN NaN NaN NaN NaN NaN NaN 87.57 1 87.57 87.07 88.07 0 0 0 0 0.4007 1 20989 20989 0.52476 0 1 28996 14230 18342 18353 33575 33575 0.12294125368293862 NQKLTELKG 9 Unmodified _NQKLTELKG_ 0 0 0 L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|106|3|sense L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|106|3|sense L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|106|3|sense MSMS UPN48_class_I_Rep_2 6 515.7973022460938 2 515.798206 1029.58186 NaN NaN NaN NaN NaN NaN NaN 28.879 1 32.51 32.01 33.01 3.6311 0 0 0 0.37476 1 4029 4029 6.7232 0 1 28997 8850 18343 18354 33576 33576 0.06825127989009161 NQKRYRVAK 9 Unmodified _NQKRYRVAK_ 0 0 0 L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|15|1|sense L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|15|1|sense L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 581.8418579101562 2 581.843813 1161.67307 NaN NaN NaN NaN NaN NaN NaN 89.565 1 93.312 92.812 93.812 3.7471 0 0 0 0.4007 1 21347 21347 0.52476 0 1 28998 9829 18344 18355 33577 33577 0.0987043647696737 NQKYTWLD 8 Unmodified _NQKYTWLD_ 0 0 0 ENST00000605031.5_1_9:20726335-20740288:+|nuORF ENST00000605031.5_1_9:20726335-20740288:+|nuORF ENST00000605031.5_1_9:20726335-20740288:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 533.7980346679688 2 534.261456 1066.50836 0.41692 0.00022274 0.18431 9.8471E-05 0.60123 0.00032121 534.2615323021361 49.427 0.49578 52.662 52.409 52.905 3.2345 46 29 2 0 0 0 0.72333 1 10880 10880 9.3474 2.0582 1 59188 28999 7673 18345 18356 33578 33578 -0.022234204534925084 NQLEKVQQE 9 Unmodified _NQLEKVQQE_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MSMS UPN48_class_I_Rep_1 5 558.306640625 2 558.288202 1114.56185 NaN NaN NaN NaN NaN NaN NaN 45.916 1 49.432 48.932 49.932 3.5162 0 0 0 0.32573 1 8907 8907 9.3831 0.63772 1 + 29000 19624 18346 18357 33579 33579 0.00915332258387025 NQLINKPPLK 10 Unmodified _NQLINKPPLK_ 0 0 0 REV__L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|63|3|sense REV__L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|63|3|sense MSMS UPN47_class_I_Rep_2 3 582.8560791015625 2 582.858598 1163.70264 NaN NaN NaN NaN NaN NaN NaN 96.035 1 99.511 99.011 100.01 3.4753 0 0 0 0.53105 1 23619 23619 3.5965 0.31518 1 + 29001 25201 18347 18358 33580 33580 0.1273395570244702 NQLKNNPVYI 10 Unmodified _NQLKNNPVYI_ 0 0 0 REV__L1MEc_dup7663|chr6:166881957-166883840:+|1.1990060194852956|0.2907973539199939|2.04|151.0|28|2|sense REV__L1MEc_dup7663|chr6:166881957-166883840:+|1.1990060194852956|0.2907973539199939|2.04|151.0|28|2|sense MSMS UPN46_class_I_Rep_3 1 601.8304443359375 2 601.830037 1201.64552 NaN NaN NaN NaN NaN NaN NaN 53.364 1 53.364 52.864 53.864 0 0 0 0 0.53105 1 11478 11478 10.074 2.7847 1 + 29002 28480 18348 18359 33581 33581 0.05276488426079595 NQLVTALNAA 10 Unmodified _NQLVTALNAA_ 0 0 0 REV__ENSG00000180346|ENST00000603357|TIGD2 REV__ENSG00000180346|ENST00000603357|TIGD2 MULTI-MSMS UPN48_class_I_Rep_1 5 507.7841491699219 2 507.782556 1013.55056 0.22811 0.00011583 2.1219 0.0010775 2.35 0.0011933 507.78344952588213 43.659 0.13383 47.17 47.055 47.189 3.5103 19 11 2 0 0 0 0.56078 1 8225 8225 3.2813 0.97858 1 146940 + 29003 20702 18349 18360 33582 33582 0.04432554954871648 NQLVTALNAA 10 Unmodified _NQLVTALNAA_ 0 0 0 REV__ENSG00000180346|ENST00000603357|TIGD2 REV__ENSG00000180346|ENST00000603357|TIGD2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 507.782556 1013.55056 0.22811 0.00011583 2.1219 0.0010775 2.35 0.0011933 507.78344952588213 43.659 0.13383 47.17 47.055 47.189 3.5103 0.093499 6.2081E-06 NaN 3.2813 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 146940 + 29004 20702 18349 18360 0.04432554954871648 NQLVTALNAA 10 Unmodified _NQLVTALNAA_ 0 0 0 REV__ENSG00000180346|ENST00000603357|TIGD2 REV__ENSG00000180346|ENST00000603357|TIGD2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 507.782556 1013.55056 0.19124 9.7109E-05 2.1144 0.0010736 2.3056 0.0011707 507.7835476138459 43.344 0.32871 46.983 46.882 47.21 3.6385 -0.093499 -1.4428E-06 NaN 3.2813 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 123550 + 29005 20702 18349 18360 0.04432554954871648 NQLWGQSF 8 Unmodified _NQLWGQSF_ 0 0 0 REV__ENST00000540210.5_1_10:70502250-70506946:+|nuORF REV__ENST00000540210.5_1_10:70502250-70506946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 490.23516845703125 2 490.235242 978.45593 -0.27014 -0.00013243 0.42322 0.00020748 0.15308 7.5046E-05 490.23535779666327 37.794 0.99261 41.459 41.041 42.034 3.6652 128 75 2 0 0 0 0.82752 1 7273 7273 4.756 0 1 125040 + 29006 22910 18350 18361 33583 33583 -0.034159587964154525 NQLWGQSF 8 Unmodified _NQLWGQSF_ 0 0 0 REV__ENST00000540210.5_1_10:70502250-70506946:+|nuORF REV__ENST00000540210.5_1_10:70502250-70506946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.2355041503906 2 490.235242 978.45593 -0.30909 -0.00015153 0.24929 0.00012221 -0.059798 -2.9315E-05 490.23531441859564 38.265 0.98372 41.507 41.133 42.117 3.2414 90 74 2 0 0 0 0.82752 1 7371 7371 8.5933 0 1 98333 + 29007 22910 18350 18361 33584 33584 -0.034159587964154525 NQMAPSAECDH 11 Unmodified _NQMAPSAECDH_ 0 0 0 REV__THE1B_dup7358|chr5:70504984-70505340:+|1.763666202528511|0.018749612913425|6.56|141.0|5|1|sense REV__THE1B_dup7358|chr5:70504984-70505340:+|1.763666202528511|0.018749612913425|6.56|141.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 601.6953735351562 2 601.73188 1201.44921 NaN NaN NaN NaN NaN NaN NaN 115.58 1 119.05 118.55 119.55 3.462 0 0 0 0.38417 1 28429 28429 1.1933 0.39971 1 + 29008 32234 18351 18362 33585 33585 -0.14346007801623273 NQMIPENKYF 10 Unmodified _NQMIPENKYF_ 0 0 0 nc|ENSG00000132530|Q6GPH4-6|XAF1;ENST00000575369.5_1_17:6662992-6674357:+|nuORF;nc|ENSG00000132530|Q6GPH4-2|XAF1;nc|ENSG00000132530|Q6GPH4-7|XAF1;ENSG00000132530|ENST00000361842|XAF1 nc|ENSG00000132530|Q6GPH4-6|XAF1 nc|ENSG00000132530|Q6GPH4-6|XAF1 MSMS UPN46_class_I_Rep_3 1 641.8828125 2 642.308081 1282.60161 NaN NaN NaN NaN NaN NaN NaN 94.176 1 94.176 93.676 94.676 0 0 0 0 0.53105 1 22842 22842 3.5965 0.60125 1 29009 2762 18352 18363 33586 33586 -0.028388640625735206 NQNEQELN 8 Unmodified _NQNEQELN_ 0 0 0 REV__ENSG00000124429|ENST00000262753|POF1B REV__ENSG00000124429|ENST00000262753|POF1B MSMS UPN47_class_I_Rep_2 3 494.7191162109375 2 494.720153 987.425752 NaN NaN NaN NaN NaN NaN NaN 27.27 1 30.768 30.268 31.268 3.4986 0 0 0 0.40625 1 4068 4068 2.3027 0 1 + 29010 18808 18353 18364 33587 33587 -0.06846362252292693 NQNEQELN 8 Unmodified _NQNEQELN_ 0 0 0 REV__ENSG00000124429|ENST00000262753|POF1B REV__ENSG00000124429|ENST00000262753|POF1B MSMS UPN47_class_I_Rep_2 3 494.7186584472656 2 494.720153 987.425752 NaN NaN NaN NaN NaN NaN NaN 32.947 1 36.402 35.902 36.902 3.4547 0 0 0 0.40625 1 5773 5773 2.3027 0 1 + 29011 18808 18353 18364 33588 33588 -0.06846362252292693 NQNNLEKGKS 10 Unmodified _NQNNLEKGKS_ 0 0 0 L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|35|2|sense L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|35|2|sense L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|35|2|sense MSMS UPN48_class_I_Rep_1 5 566.2896728515625 2 566.291276 1130.568 NaN NaN NaN NaN NaN NaN NaN 44.448 1 47.961 47.461 48.461 3.5132 0 0 0 0.53105 1 8462 8462 1.1933 0.23107 1 29012 10595 18354 18365 33589 33589 0.007938504899129839 NQNQKLGLPLH 11 Unmodified _NQNQKLGLPLH_ 0 0 0 L1ME1_dup11180|chr6:17673365-17674331:+|1.197781481747733|0.0417579113067337|4.84|151.0|28|3|sense L1ME1_dup11180|chr6:17673365-17674331:+|1.197781481747733|0.0417579113067337|4.84|151.0|28|3|sense L1ME1_dup11180|chr6:17673365-17674331:+|1.197781481747733|0.0417579113067337|4.84|151.0|28|3|sense MSMS UPN47_class_I_Rep_3 4 631.3524169921875 2 631.354211 1260.69387 NaN NaN NaN NaN NaN NaN NaN 67.631 1 70.822 70.322 71.322 3.1914 0 0 0 0.38417 1 16386 16386 1.1933 0.66858 1 29013 12176 18355 18366 33590 33590 0.07394982065989097 NQNQNEIPLY 10 Unmodified _NQNQNEIPLY_ 0 0 0 L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 616.7974853515625 2 616.798934 1231.58332 0.0084866 5.2345E-06 -0.08347 -5.1484E-05 -0.074984 -4.625E-05 616.7988667074247 38.517 0.67849 42.183 41.905 42.584 3.6652 103 45 3 0 0 0 0.55148 1 7514 7514 5.2969 0.96765 1 254890 29014 9770 18356 18367 33591 33591 -0.023212827129100333 NQNQNEIPLY 10 Unmodified _NQNQNEIPLY_ 0 0 0 L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 616.7988891601562 2 616.798934 1231.58332 0.045085 2.7808E-05 -0.023388 -1.4425E-05 0.021697 1.3383E-05 616.7989310519092 38.776 0.71209 42.155 41.894 42.606 3.3785 101 46 3 0 0 0 0.48573 1 7616 7616 13.042 0.51092 1 237640 29015 9770 18356 18367 33592 33592 -0.023212827129100333 NQNQNEIPLY 10 Unmodified _NQNQNEIPLY_ 0 0 0 L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 616.7992553710938 2 616.798934 1231.58332 -0.043849 -2.7046E-05 -0.073247 -4.5179E-05 -0.1171 -7.2225E-05 616.7987926391742 38.994 0.83587 42.232 41.855 42.69 3.238 125 59 3 0 0 0 0.55148 1 7743 7743 5.2969 0.96765 1 166750 29016 9770 18356 18367 33593 33593 -0.023212827129100333 NQPENSKTLAT 11 Unmodified _NQPENSKTLAT_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001|DST MSMS UPN48_class_I_Rep_1 5 601.8037719726562 2 601.804217 1201.59388 NaN NaN NaN NaN NaN NaN NaN 33.563 1 37.083 36.583 37.583 3.5201 0 0 0 0.38417 1 5251 5251 1.0715 0.46996 1 29017 3607;16712 18357 18368 33594 33594 0.0011469994153685548 NQPNQKLFSY 10 Unmodified _NQPNQKLFSY_ 0 0 0 REV__ENST00000409407.4_1_2:71635290-71635404:+|nuORF REV__ENST00000409407.4_1_2:71635290-71635404:+|nuORF MSMS UPN47_class_I_Rep_1 2 619.8116455078125 2 619.811845 1237.60914 NaN NaN NaN NaN NaN NaN NaN 52.574 1 56.133 55.633 56.633 3.5585 0 0 0 0.53105 1 11709 11709 3.2813 0.28607 1 + 29018 17853 18358 18369 33595 33595 -0.0001638847061258275 NQPVMFMYA 9 Unmodified _NQPVMFMYA_ 0 0 0 REV__Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|136|2|anti-sense REV__Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|136|2|anti-sense MSMS UPN48_class_I_Rep_3 7 550.7490844726562 2 550.748813 1099.48307 NaN NaN NaN NaN NaN NaN NaN 72.88 1 76.417 75.917 76.917 3.5373 0 0 0 0.39326 1 17019 17019 2.3027 0 1 + 29019 32338 18359 18370 33596 33596 -0.06268934571880891 NQQLMFRTPN 10 Unmodified _NQQLMFRTPN_ 0 0 0 REV__L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|6|1|sense REV__L1MEc_dup1101|chr1:167777286-167778040:+|1.0489100834694938|0.3675211756557019|1.51|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 624.8128662109375 2 624.811322 1247.60809 NaN NaN NaN NaN NaN NaN NaN 27.229 1 30.792 30.292 31.292 3.5629 0 0 0 0.53105 1 3475 3475 1.6526 0.32309 1 + 29020 28349 18360 18371 33597 33597 -0.00580926111183544 NQRWMRRR 8 Unmodified _NQRWMRRR_ 0 0 0 ENSG00000189431|ENST00000529419|RASSF10 ENSG00000189431|ENST00000529419|RASSF10 ENSG00000189431|ENST00000529419|RASSF10 MSMS UPN47_class_I_Rep_3 4 601.8228149414062 2 601.825432 1201.63631 NaN NaN NaN NaN NaN NaN NaN 70.748 1 73.959 73.459 74.459 3.2113 0 0 0 0.40746 1 17324 17324 0.69038 0.088878 1 29021 5278 18361 18372 33598 33598 0.04355861379417547 NQTECRARR 9 Unmodified _NQTECRARR_ 0 0 0 REV__ENSG00000189337|ENST00000376030|KAZN REV__ENSG00000189337|ENST00000376030|KAZN MSMS UPN47_class_I_Rep_1 2 567.3106079101562 2 567.283263 1132.55197 NaN NaN NaN NaN NaN NaN NaN 25.417 1 29.167 28.667 29.667 3.7495 0 0 0 0.39518 1 3482 3482 1.8442 0 1 + 29022 21009 18362 18373 33599 33599 -0.0090013422800439 NQTKKQRW 8 Unmodified _NQTKKQRW_ 0 0 0 REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|96|3|sense REV__L1MA3_dup6267|chr11:10169050-10172359:-|2.0449202199416026|0.1087917056228934|4.23|151.0|96|3|sense MSMS UPN46_class_I_Rep_3 1 544.8162231445312 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 13.868 1 13.868 13.368 14.368 0 0 0 0 0.40746 1 490 490 0.69038 0 1 + 29023 25072 18363 18374 33600 33600 0.04838485660229708 NQTYFPYWR 9 Unmodified _NQTYFPYWR_ 0 0 0 REV__ENST00000482481.1_1_1:94650449-94650569:-|nuORF REV__ENST00000482481.1_1_1:94650449-94650569:-|nuORF MSMS UPN48_class_I_Rep_1 5 637.7997436523438 2 637.80128 1273.58801 NaN NaN NaN NaN NaN NaN NaN 39.881 1 43.386 42.886 43.886 3.5048 0 0 0 0.38784 1 7094 7094 3.5965 0 1 + 29024 22575 18364 18375 33601 33601 -0.03784353779496996 NQVIFPVSY 9 Unmodified _NQVIFPVSY_ 0 0 0 ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;ENSG00000121579|ENST00000240922|NAA50 ENST00000467022.1_1_3:113442441-113464796:-|nuORF ENST00000467022.1_1_3:113442441-113464796:-|nuORF MSMS UPN46_class_I_Rep_3 1 533.78173828125 2 533.782025 1065.5495 NaN NaN NaN NaN NaN NaN NaN 75.375 1 75.375 74.875 75.875 0 0 0 0 0.11827 1 17522 17522 21.537 6.9553 1 29025 2359 18365 18376 33602 33602 0.01934340586012695 NQVLSFDYD 9 Unmodified _NQVLSFDYD_ 0 0 0 nc|nan|A6NC05|C5orf63 nc|nan|A6NC05|C5orf63 nc|nan|A6NC05|C5orf63 MSMS UPN47_class_I_Rep_2 3 550.7496337890625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 31.035 1 34.517 34.017 35.017 3.4821 0 0 0 0.39428 1 5201 5201 2.0598 0 1 29026 16868 18366 18377 33603 33603 -0.06355734415615188 NQVYDLQIF 9 Unmodified _NQVYDLQIF_ 0 0 0 L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|44|2|anti-sense L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|44|2|anti-sense L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2900390625 2 570.290214 1138.56587 NaN NaN NaN NaN NaN NaN NaN 68.413 1 71.611 71.111 72.111 3.1977 0 0 0 0.38639 1 16622 16622 3.9444 0 1 29027 10645 18367 18378 33604 33604 0.0021342175209611014 NQYEGHVM 8 Unmodified _NQYEGHVM_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS UPN47_class_I_Rep_2 3 489.21075439453125 2 489.210909 976.407265 0.20668 0.00010111 0.29458 0.00014411 0.50126 0.00024522 489.21098067907894 66.62 0.51026 69.879 69.626 70.136 3.2588 53 36 2 0 0 0 0.82752 1 16025 16025 0.79363 0 1 92713 + 29028 20134 18368 18379 33605 33605 -0.0818819542782876 NQYEIFFLL 9 Unmodified _NQYEIFFLL_ 0 0 0 REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 593.81103515625 2 593.810782 1185.60701 0.44788 0.00026596 0.15817 9.3926E-05 0.60606 0.00035988 593.8107879002346 75.391 0.73846 78.891 78.515 79.253 3.4996 90 28 4 0 0 0 0.090251 2 17867 17823;17867 36.127 3.3413 1 1362300 + 29029 17352 18369 18380 33606;33607 33607 0.021631827915825852 NQYEIFFLL 9 Unmodified _NQYEIFFLL_ 0 0 0 REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 593.810782 1185.60701 0.44788 0.00026596 0.15817 9.3926E-05 0.60606 0.00035988 593.8107879002346 75.391 0.73846 78.891 78.515 79.253 3.4996 0.08331 7.5022E-07 NaN 36.127 90 28 4 NaN NaN NaN NaN 0 NaN NaN 0 1362300 + 29030 17352 18369 18380 0.021631827915825852 NQYEIFFLL 9 Unmodified _NQYEIFFLL_ 0 0 0 REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 593.810782 1185.60701 0.47767 0.00028365 0.35394 0.00021017 0.83161 0.00049382 593.8108747282298 75.183 0.3625 78.773 78.443 78.805 3.59 -0.034658 0.00023324 NaN 36.127 97 41 3 NaN NaN NaN NaN 0 NaN NaN 0 857290 + 29031 17352 18369 18380 0.021631827915825852 NQYEIFFLL 9 Unmodified _NQYEIFFLL_ 0 0 0 REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense REV__Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|15|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 593.810782 1185.60701 0.56786 0.0003372 -0.13286 -7.8893E-05 0.435 0.00025831 593.8105789779805 75.193 0.28397 78.759 78.729 79.013 3.5659 -0.048652 -0.00034489 NaN 36.127 82 29 4 NaN NaN NaN NaN 0 NaN NaN 0 2528400 + 29032 17352 18369 18380 0.021631827915825852 NQYIYYFY 8 Unmodified _NQYIYYFY_ 0 0 0 REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|109|3|anti-sense REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|109|3|anti-sense MSMS UPN47_class_I_Rep_1 2 587.2662963867188 2 587.266207 1172.51786 NaN NaN NaN NaN NaN NaN NaN 72.508 1 75.888 75.388 76.388 3.3799 0 0 0 0.40738 1 17746 17746 0.79363 0 1 + 29033 25173 18370 18381 33608 33608 -0.061496521679600846 NRAFVFCC 8 Unmodified _NRAFVFCC_ 0 0 0 REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|164|1|anti-sense REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|164|1|anti-sense MSMS UPN47_class_I_Rep_3 4 479.7483825683594 2 480.21494 958.415328 NaN NaN NaN NaN NaN NaN NaN 118.9 1 122.32 121.82 122.82 3.4157 0 0 0 0.40604 1 29347 29347 2.5775 0 1 + 29034 29119 18371 18382 33609 33609 -0.06554339712067758 NRAKQYSKF 9 Unmodified _NRAKQYSKF_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|4.812939809082373|0.2927699401366612|4.04|151.0|73|3|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|4.812939809082373|0.2927699401366612|4.04|151.0|73|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.8109130859375 2 571.309272 1140.60399 0.27473 0.00015695 -0.1455 -8.3125E-05 0.12923 7.3828E-05 571.3088871136093 32.618 0.1871 32.618 32.533 32.72 0 18 12 2 0 0 0 0.49026 1 5619 5619 1.6526 1.6526 1 65007 + 29035 29631 18372 18383 33610 33610 0.03931352457425419 NRALLPWL 8 Unmodified _NRALLPWL_ 0 0 0 ENST00000480460.1_1_22:20103056-20103595:-|nuORF;ENST00000494641.1_1_22:20103119-20103621:-|nuORF;ENST00000468917.1_1_22:20103119-20104069:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A ENST00000480460.1_1_22:20103056-20103595:-|nuORF ENST00000480460.1_1_22:20103056-20103595:-|nuORF MSMS UPN48_class_I_Rep_1 5 491.7967834472656 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.884 1 63.364 62.864 63.864 3.4801 0 0 0 0.40404 1 13198 13198 5.2307 0.90143 1 29036 1450 18373 18384 33611 33611 0.08446074267976655 NRAQSFRPL 9 Unmodified _NRAQSFRPL_ 0 0 0 ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 MSMS UPN46_class_I_Rep_3 1 544.7642211914062 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 26.71 1 26.71 26.21 27.21 0 0 0 0 0.3967 1 3860 3860 1.4819 0 1 29037 1246 18374 18385 33612 33612 0.04838485660229708 NRARPQLKKK 10 Unmodified _NRARPQLKKK_ 0 0 0 AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 619.8936767578125 2 619.893838 1237.77312 NaN NaN NaN NaN NaN NaN NaN 41.312 1 41.312 40.812 41.812 0 0 0 0 0.53105 1 8087 8087 0.40072 0 1 29038 179 18375 18386 33613 33613 0.16374673810764762 NRAVKYVRQ 9 Unmodified _NRAVKYVRQ_ 0 0 0 L1MD1_dup1214|chr3:58364724-58365792:-|1.3948510195069|0.026449218938212|5.72|150.0|16|2|sense L1MD1_dup1214|chr3:58364724-58365792:-|1.3948510195069|0.026449218938212|5.72|150.0|16|2|sense L1MD1_dup1214|chr3:58364724-58365792:-|1.3948510195069|0.026449218938212|5.72|150.0|16|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.3299560546875 2 567.330539 1132.64652 0.46334 0.00026287 -1.1801 -0.00066951 -0.71676 -0.00040664 567.3295937653246 98.925 0.22803 98.925 98.741 98.969 0 53 25 3 0 0 0 0.48643 1 24053 24053 2.0598 0.21551 1 360680 29039 11908 18376 18387 33614 33614 0.08550747585650242 NRCFSREDI 9 Unmodified _NRCFSREDI_ 0 0 0 L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|44|1|sense L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|44|1|sense L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|44|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.26708984375 2 570.266747 1138.51894 0.45835 0.00026138 -0.070989 -4.0482E-05 0.38736 0.0002209 570.2666773126293 75.247 0.54418 78.493 78.194 78.738 3.2464 78 53 2 0 0 0 0.37599 1 18606 18606 9.3831 0 1 108600 29040 9500 18377 18388 33615 33615 -0.04477761070688757 NRCWRNRN 8 Unmodified _NRCWRNRN_ 0 0 0 L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|42|1|sense L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|42|1|sense L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|42|1|sense MSMS UPN48_class_I_Rep_2 6 559.7723999023438 2 559.772865 1117.53118 NaN NaN NaN NaN NaN NaN NaN 117.73 1 121.4 120.9 121.9 3.6627 0 0 0 0.40625 1 28223 28223 2.3027 0.65011 1 29041 14913 18378 18389 33616 33616 -0.022886798170020484 NRDRPMEQN 9 Unmodified _NRDRPMEQN_ 0 0 0 L1PA5_dup3008|chr4:112161085-112164263:+|1.7622145728230152|0.1610762470690486|3.45|151.0|77|3|sense L1PA5_dup3008|chr4:112161085-112164263:+|1.7622145728230152|0.1610762470690486|3.45|151.0|77|3|sense L1PA5_dup3008|chr4:112161085-112164263:+|1.7622145728230152|0.1610762470690486|3.45|151.0|77|3|sense MSMS UPN47_class_I_Rep_2 3 580.2662963867188 2 580.267278 1158.52 NaN NaN NaN NaN NaN NaN NaN 65.489 1 68.745 68.245 69.245 3.2556 0 0 0 0.3967 1 15672 15672 1.4819 0 1 29042 14457 18379 18390 33617 33617 -0.05291546701778316 NREKAPYL 8 Unmodified _NREKAPYL_ 0 0 0 L1PA15_dup2576|chr5:75432354-75433526:-|1.3857046107551485|0.0222094934839741|5.96|150.0|10|1|sense L1PA15_dup2576|chr5:75432354-75433526:-|1.3857046107551485|0.0222094934839741|5.96|150.0|10|1|sense L1PA15_dup2576|chr5:75432354-75433526:-|1.3857046107551485|0.0222094934839741|5.96|150.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.7721252441406 2 495.771991 989.529429 0.2509 0.00012439 0.50496 0.00025034 0.75586 0.00037473 495.7720874123013 39.275 0.57046 39.275 39.028 39.598 0 96 57 2 0 0 0 0.82752 1 7526 7526 8.5933 1.304 1 317400 29043 13902 18380 18391 33618 33618 0.03424589646022014 NRERQEHN 8 Unmodified _NRERQEHN_ 0 0 0 nc|ENSG00000080815|P49768-4|PSEN1;ENSG00000080815.19,PSEN1,chr14,+,I15.1,73206473,73208823|73|10.01|3|intron;ENSG00000080815.19,PSEN1,chr14,+,I15.1,73206473,73208823|73|10.01|1|intron;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1 nc|ENSG00000080815|P49768-4|PSEN1 nc|ENSG00000080815|P49768-4|PSEN1 MSMS UPN47_class_I_Rep_1 2 541.7570190429688 2 541.757935 1081.50132 NaN NaN NaN NaN NaN NaN NaN 40.566 1 44.237 43.737 44.737 3.6719 0 0 0 0.40659 1 8058 8058 1.8442 0.36234 1 29044 1206 18381 18392 33619 33619 -0.03617340281334691 NREVKELY 8 Unmodified _NREVKELY_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|163|3|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|163|3|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|163|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 525.7825317382812 2 525.782556 1049.55056 -0.2361 -0.00012414 0.35892 0.00018871 0.12282 6.4575E-05 525.7825930316677 42.772 0.81332 46.133 45.686 46.499 3.3611 102 55 3 0 0 0 0.82752 1 8685 8685 10.824 0 1 187330 29045 13908 18382 18393 33620 33620 0.027765549549030766 NREYDRFY 8 Unmodified _NREYDRFY_ 0 0 0 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 MSMS UPN47_class_I_Rep_3 4 581.7682495117188 2 581.767437 1161.52032 NaN NaN NaN NaN NaN NaN NaN 45.244 1 48.488 47.988 48.988 3.2441 0 0 0 0.40404 1 9567 9567 5.2307 0 1 29046 5472 18383 18394 33621 33621 -0.053978037102979215 NRFLWAPL 8 Unmodified _NRFLWAPL_ 0 0 0 ENST00000301019.8_1_16:88874828-88874996:+|nuORF ENST00000301019.8_1_16:88874828-88874996:+|nuORF ENST00000301019.8_1_16:88874828-88874996:+|nuORF MSMS UPN46_class_I_Rep_3 1 508.787109375 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 22.906 1 22.906 22.406 23.406 0 0 0 0 0.40738 1 2792 2792 0.79363 0 1 29047 6072 18384 18395 33622 33622 0.053177877509369864 NRFRNIYI 8 Unmodified _NRFRNIYI_ 0 0 0 REV__L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|11|2|sense REV__L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 548.3330078125 2 548.306532 1094.59851 NaN NaN NaN NaN NaN NaN NaN 82.749 1 86.336 85.836 86.836 3.5871 0 0 0 0.40404 1 19768 19768 5.2307 0.90143 1 + 29048 24611 18385 18396 33623 33623 0.05499673665599403 NRFRNIYI 8 Unmodified _NRFRNIYI_ 0 0 0 REV__L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|11|2|sense REV__L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 548.3084106445312 2 548.306532 1094.59851 NaN NaN NaN NaN NaN NaN NaN 82.615 1 86.284 85.784 86.784 3.669 0 0 0 0.40404 1 19623 19623 5.2307 0 1 + 29049 24611 18385 18396 33624 33624 0.05499673665599403 NRFYLHQAI 9 Unmodified _NRFYLHQAI_ 0 0 0 ENSG00000277481|ENST00000620267|PKD1L3 ENSG00000277481|ENST00000620267|PKD1L3 ENSG00000277481|ENST00000620267|PKD1L3 MSMS UPN48_class_I_Rep_3 7 581.3099975585938 2 581.311815 1160.60908 NaN NaN NaN NaN NaN NaN NaN 46.288 1 49.925 49.425 50.425 3.6369 0 0 0 0.39518 1 8959 8959 1.8442 0.19162 1 29050 5833 18386 18397 33625 33625 0.03519656320031572 NRGRITLL 8 Unmodified _NRGRITLL_ 0 0 0 REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1 REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1 MSMS UPN48_class_I_Rep_1 5 471.7959289550781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 66.141 1 69.593 69.093 70.093 3.4516 0 0 0 0.40604 1 15102 15102 2.5775 0 1 + 29051 17518 18387 18398 33626 33626 0.10392288636899139 NRGYIFIKL 9 Unmodified _NRGYIFIKL_ 0 0 0 REV__L1ME3Cz_dup11120|chr18:234682-236204:-|3.0226049753426105|0.1881124094550136|4.01|151.0|67|1|anti-sense REV__L1ME3Cz_dup11120|chr18:234682-236204:-|3.0226049753426105|0.1881124094550136|4.01|151.0|67|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.334716796875 2 562.334759 1122.65496 0.22461 0.00012631 -0.017756 -9.9848E-06 0.20686 0.00011632 562.3345469305194 31.802 0.10639 31.802 31.783 31.889 0 20 8 3 0 0 0 0.48643 1 5365 5365 2.0598 1.4583 1 236240 + 29052 28101 18388 18399 33627 33627 0.09854301502264207 NRHFSKKTK 9 Unmodified _NRHFSKKTK_ 0 0 0 L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|5|1|sense L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|5|1|sense L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.3299560546875 2 573.330539 1144.64652 0.45673 0.00026186 -0.76604 -0.0004392 -0.30931 -0.00017734 573.3299316145576 89.731 0.10324 93.405 93.383 93.486 3.6738 13 12 2 0 0 0 0.49026 1 22440 22440 1.6526 0.17072 1 39459 29053 10236 18389 18400 33628 33628 0.07998747585634192 NRHFSKKTK 9 Unmodified _NRHFSKKTK_ 0 0 0 L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|5|1|sense L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|5|1|sense L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|5|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 573.330539 1144.64652 0.45673 0.00026186 -0.76604 -0.0004392 -0.30931 -0.00017734 573.3299316145576 89.731 0.10324 93.405 93.383 93.486 3.6738 0.17493 0.00088047 NaN 1.6526 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 39459 29054 10236 18389 18400 0.07998747585634192 NRHFWHTM 8 Unmodified _NRHFWHTM_ 0 0 0 REV__ENST00000473962.5_1_1:222886726-222897445:+|nuORF REV__ENST00000473962.5_1_1:222886726-222897445:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.7935180664062 2 564.761435 1127.50832 NaN NaN NaN NaN NaN NaN NaN 31.763 1 35.464 34.964 35.964 3.7015 0 0 0 0.40604 1 4742 4742 2.5775 0.27475 1 + 29055 22518 18390 18401 33629 33629 -0.05033698934471431 NRHNLKYY 8 Unmodified _NRHNLKYY_ 0 0 0 ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MSMS UPN48_class_I_Rep_2 6 554.303466796875 2 554.28834 1106.56213 NaN NaN NaN NaN NaN NaN NaN 31.611 1 35.252 34.752 35.752 3.641 0 0 0 0.40604 1 4777 4777 2.5775 0 1 29056 5361 18391 18402 33630 33630 0.013107967688938515 NRHYFFFF 8 Unmodified _NRHYFFFF_ 0 0 0 L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|62|1|anti-sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|62|1|anti-sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 589.2582397460938 2 589.282526 1176.5505 NaN NaN NaN NaN NaN NaN NaN 40.13 1 43.501 43.001 44.001 3.3712 0 0 0 0.40746 1 7956 7956 0.69038 0 1 29057 12218 18392 18403 33631 33631 -0.03071400254452783 NRIHAQNVQ 9 Unmodified _NRIHAQNVQ_ 0 0 0 L1PA8A_dup1446|chrX:9506971-9509078:+|1.2666338229972265|0.0297208348608495|5.41|151.0|98|2|anti-sense L1PA8A_dup1446|chrX:9506971-9509078:+|1.2666338229972265|0.0297208348608495|5.41|151.0|98|2|anti-sense L1PA8A_dup1446|chrX:9506971-9509078:+|1.2666338229972265|0.0297208348608495|5.41|151.0|98|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 539.8146362304688 2 540.288871 1078.56319 0.47419 0.0002562 3.2989 0.0017824 3.7731 0.0020386 540.2931707355126 88.752 0.039917 92.49 92.466 92.506 3.7379 6 4 2 0 0 0 0.12281 1 21130 21130 4.3292 0 1 19621 29058 14964 18393 18404 33632 33632 0.027050111377775465 NRIHLLMK 8 Unmodified _NRIHLLMK_ 0 0 0 MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|27|3|anti-sense MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|27|3|anti-sense MLT1G1_dup2660|chr12:123427118-123427531:-|4.774680619643217|0.0477105841864031|6.64|151.0|27|3|anti-sense MSMS UPN47_class_I_Rep_2 3 513.2518920898438 2 512.807854 1023.60115 NaN NaN NaN NaN NaN NaN NaN 34.114 1 37.554 37.054 38.054 3.4398 0 0 0 0.40746 1 6129 6129 0.69038 0 1 29059 16412 18394 18405 33633 33633 0.09029805798911639 NRIKLMFH 8 Unmodified _NRIKLMFH_ 0 0 0 REV__L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|95|2|sense REV__L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|95|2|sense MSMS UPN48_class_I_Rep_3 7 529.7997436523438 2 529.800029 1057.5855 NaN NaN NaN NaN NaN NaN NaN 112 1 115.66 115.16 116.16 3.6614 0 0 0 0.40746 1 26597 26597 0.69038 0 1 + 29060 29693 18395 18406 33634 33634 0.05901519281860601 NRIRGGLG 8 Unmodified _NRIRGGLG_ 0 0 0 ENST00000305877.12_2_22:23658764-23658902:+|nuORF ENST00000305877.12_2_22:23658764-23658902:+|nuORF ENST00000305877.12_2_22:23658764-23658902:+|nuORF MSMS UPN46_class_I_Rep_3 1 421.7512512207031 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 83.113 1 83.113 82.613 83.613 0 0 0 0 0.40364 1 19722 19722 5.7604 0 1 29061 6089 18396 18407 33635 33635 0.061148733972345326 NRKFALYH 8 Unmodified _NRKFALYH_ 0 0 0 REV__L1MB3_dup421|chr1:50955548-50956171:+|1.371524260025348|0.0225767673003522|5.92|151.0|21|3|sense REV__L1MB3_dup421|chr1:50955548-50956171:+|1.371524260025348|0.0225767673003522|5.92|151.0|21|3|sense MSMS UPN48_class_I_Rep_2 6 524.7891235351562 2 524.787976 1047.5614 NaN NaN NaN NaN NaN NaN NaN 44.724 1 48.486 47.986 48.986 3.7617 0 0 0 0.40581 1 8556 8556 2.8892 0.31174 1 + 29062 25888 18397 18408 33636 33636 0.03952002119831377 NRKFHFPF 8 Unmodified _NRKFHFPF_ 0 0 0 ENSG00000171517|ENST00000370611|LPAR3 ENSG00000171517|ENST00000370611|LPAR3 ENSG00000171517|ENST00000370611|LPAR3 MSMS UPN48_class_I_Rep_3 7 546.8253784179688 2 546.790518 1091.56648 NaN NaN NaN NaN NaN NaN NaN 112.88 1 116.54 116.04 117.04 3.6568 0 0 0 0.40738 1 26828 26828 0.79363 0 1 29063 4526 18398 18409 33637 33637 0.024363059824509037 NRKFYRQR 8 Unmodified _NRKFYRQR_ 0 0 0 REV__L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|50|2|anti-sense REV__L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|50|2|anti-sense MSMS UPN46_class_I_Rep_3 1 584.6626586914062 2 584.328331 1166.64211 NaN NaN NaN NaN NaN NaN NaN 104.42 1 104.42 103.92 104.92 0 0 0 0 0.40746 1 25497 25497 0.69038 0 1 + 29064 26097 18399 18410 33638 33638 0.06545283162745363 NRKIRKERFRE 11 Unmodified _NRKIRKERFRE_ 0 0 0 REV__L1PA5_dup8571|chr12:4341375-4346760:+|2.412041877871084|0.2878433768439809|3.07|151.0|110|3|sense REV__L1PA5_dup8571|chr12:4341375-4346760:+|2.412041877871084|0.2878433768439809|3.07|151.0|110|3|sense MSMS UPN46_class_I_Rep_3 1 511.30267333984375 3 511.302452 1530.88553 NaN NaN NaN NaN NaN NaN NaN 101.78 1 101.78 101.28 102.28 0 0 0 0 0.38417 1 24833 24833 0.094841 0 1 + 29065 29808 18400 18411 33639 33639 0.14131902816961883 NRKITRYYE 9 Unmodified _NRKITRYYE_ 0 0 0 REV__L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|25|3|sense REV__L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 415.2249450683594 3 414.891166 1241.65167 0.08215 3.4083E-05 -0.086691 -3.5967E-05 -0.0045412 -1.8841E-06 414.8910870196158 91.326 0.14604 95.081 95.039 95.185 3.7554 34 22 2 0 0 0 0.42249 1 21769 21769 4.1895 0 1 2468400 + 29066 30329 18401 18412 33640 33640 0.0405100665759619 NRKLFAFAL 9 Unmodified _NRKLFAFAL_ 0 0 0 REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|45|1|anti-sense REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|45|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.321651 1078.62875 0.14325 7.7403E-05 0.38237 0.0002066 0.52562 0.000284 540.3218096010171 31.885 0.10639 31.885 31.783 31.889 0 16 8 2 0 0 0 0.48643 1 5368 5368 2.0598 0 1 167430 + 29067 29275 18402 18413 33641 33641 0.09258032330808419 NRKRKNSL 8 Unmodified _NRKRKNSL_ 0 0 0 L1MEd_dup837|chr1:108803786-108804766:-|1.1695436193467594|0.1353880606708054|3.11|151.0|36|3|sense L1MEd_dup837|chr1:108803786-108804766:-|1.1695436193467594|0.1353880606708054|3.11|151.0|36|3|sense L1MEd_dup837|chr1:108803786-108804766:-|1.1695436193467594|0.1353880606708054|3.11|151.0|36|3|sense MSMS UPN47_class_I_Rep_1 2 508.3019714355469 2 508.309606 1014.60466 NaN NaN NaN NaN NaN NaN NaN 51.275 1 54.868 54.368 55.368 3.5932 0 0 0 0.40472 1 11316 11316 4.3292 0 1 29068 13220 18403 18414 33642 33642 0.09794191897128712 NRKRLAAFIL 10 Unmodified _NRKRLAAFIL_ 0 0 0 MLT1G3_dup1868|chr11:72809154-72809554:+|1.0186438387117696|0.0948169708278974|3.43|151.0|13|3|sense MLT1G3_dup1868|chr11:72809154-72809554:+|1.0186438387117696|0.0948169708278974|3.43|151.0|13|3|sense MLT1G3_dup1868|chr11:72809154-72809554:+|1.0186438387117696|0.0948169708278974|3.43|151.0|13|3|sense MSMS UPN48_class_I_Rep_3 7 601.3431396484375 2 601.380032 1200.74551 NaN NaN NaN NaN NaN NaN NaN 93.497 1 97.388 96.888 97.888 3.8914 0 0 0 0.53105 1 22159 22159 0.40072 0.050084 1 29069 16419 18404 18415 33643 33643 0.1531677055054388 NRKRNRHMQ 9 Unmodified _NRKRNRHMQ_ 0 0 0 REV__L1MB2_dup1640|chr3:160548300-160550273:-|1.397309267527571|0.0360005051471376|5.28|151.0|46|2|sense REV__L1MB2_dup1640|chr3:160548300-160550273:-|1.397309267527571|0.0360005051471376|5.28|151.0|46|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 414.2402038574219 3 413.891506 1238.65269 -0.15376 -6.364E-05 -1.1805 -0.00048859 -1.3342 -0.00055223 413.8912892245414 31.383 0.23471 31.383 31.291 31.526 0 30 18 3 0 0 0 0.12516 1 5224 5224 1.0715 0 1 48508 + 29070 25705 18405 18416 33644 33644 0.04290942545526377 NRKSKKCK 8 Unmodified _NRKSKKCK_ 0 0 0 Tigger17a_dup1114|chr8:70127646-70128241:+|1.2996992197713826|0.1563058150878139|3.06|151.0|35|3|anti-sense Tigger17a_dup1114|chr8:70127646-70128241:+|1.2996992197713826|0.1563058150878139|3.06|151.0|35|3|anti-sense Tigger17a_dup1114|chr8:70127646-70128241:+|1.2996992197713826|0.1563058150878139|3.06|151.0|35|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.295111 990.575668 -0.007014 -3.481E-06 0.79664 0.00039537 0.78963 0.00039189 496.2954324241012 27.568 0.21499 27.568 27.506 27.721 0 22 15 2 0 0 0 0.82752 1 4117 4117 0.79363 0.79363 1 1274000 29071 33248 18406 18417 33645 33645 0.08000331276491579 NRKWKKNK 8 Unmodified _NRKWKKNK_ 0 0 0 L1M4_dup14806|chr12:65394322-65395184:+|2.9836463521072827|0.0288139048399316|6.69|150.0|20|2|sense L1M4_dup14806|chr12:65394322-65395184:+|2.9836463521072827|0.0288139048399316|6.69|150.0|20|2|sense L1M4_dup14806|chr12:65394322-65395184:+|2.9836463521072827|0.0288139048399316|6.69|150.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 551.3346557617188 2 551.335624 1100.6567 NaN NaN NaN NaN NaN NaN NaN 87.296 1 90.915 90.415 91.415 3.6187 0 0 0 0.40625 1 20919 20919 2.3027 0.24298 1 29072 8845 18407 18418 33646 33646 0.11039355310890642 NRLAPLKY 8 Unmodified _NRLAPLKY_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|30|3|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 487.7944641113281 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 82.124 1 85.793 85.293 86.293 3.669 0 0 0 0.40604 1 19504 19504 2.5775 0 1 + 29073 17249 18408 18419 33647 33647 0.08305770405377189 NRLKTTIYFKF 11 Unmodified _NRLKTTIYFKF_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MSMS UPN48_class_I_Rep_1 5 477.60845947265625 3 477.61 1429.80817 NaN NaN NaN NaN NaN NaN NaN 35.302 1 38.812 38.312 39.312 3.5101 0 0 0 0.38417 1 5757 5757 0.50596 0 1 + 29074 20536 18409 18420 33648 33648 0.11045871828059717 NRLQTKIA 8 Unmodified _NRLQTKIA_ 0 0 0 REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF MSMS UPN46_class_I_Rep_3 1 472.2878723144531 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 91.126 1 91.126 90.626 91.626 0 0 0 0 0.40738 1 21996 21996 0.79363 0 1 + 29075 22339 18410 18421 33649 33649 0.08748582399971383 NRLQTKIA 8 Unmodified _NRLQTKIA_ 0 0 0 REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.2877197265625 2 472.287808 942.561064 0.21053 9.9433E-05 -0.18358 -8.6701E-05 0.026958 1.2732E-05 472.28766192810406 87.014 0.32738 90.455 90.389 90.717 3.4407 77 42 2 0 0 0 0.82752 1 21678 21678 0.79363 0 1 214690 + 29076 22339 18410 18421 33650 33650 0.08748582399971383 NRLQTKIA 8 Unmodified _NRLQTKIA_ 0 0 0 REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF REV__ENST00000442636.1_1_1:8939783-8939843:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 472.2877502441406 2 472.287808 942.561064 0.21111 9.9706E-05 -0.17302 -8.1714E-05 0.038095 1.7992E-05 472.28764798810084 86.491 0.98515 90.209 90.173 91.158 3.7171 202 137 2 0 0 0 0.82752 1 20682 20682 0.79363 0 1 1283400 + 29077 22339 18410 18421 33651 33651 0.08748582399971383 NRLRLLWF 8 Unmodified _NRLRLLWF_ 0 0 0 REV__nc|ENSG00000185880|Q86WT6-4|TRIM69 REV__nc|ENSG00000185880|Q86WT6-4|TRIM69 MSMS UPN46_class_I_Rep_3 1 559.3335571289062 2 559.335093 1116.65563 NaN NaN NaN NaN NaN NaN NaN 81.473 1 81.473 80.973 81.973 0 0 0 0 0.40738 1 19242 19242 0.79363 0 1 + 29078 20866 18411 18422 33652 33652 0.10197140941954785 NRMEFWLPWFY 11 Unmodified _NRMEFWLPWFY_ 0 0 0 REV__L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|57|2|anti-sense REV__L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_3 4 529.7735595703125 3 530.251707 1587.73329 NaN NaN NaN NaN NaN NaN NaN 114.1 1 117.6 117.1 118.1 3.4963 0 0 0 0.38417 1 28006 28006 0.094841 0.011491 1 + 29079 27499 18412 18423 33653 33653 -0.03706633974798024 NRNFFSKKIY 10 Unmodified _NRNFFSKKIY_ 0 0 0 L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 439.57513427734375 3 439.575178 1315.70371 0.083026 3.6496E-05 -0.24789 -0.00010897 -0.16487 -7.2472E-05 439.57507624231715 37.354 1.4587 41.057 40.64 42.099 3.7021 278 149 2 0 0 0 0.56034 1 6277 6277 3.5871 3.5871 1 246540 29080 10882 18413 18424 33654 33654 0.05848170071385539 NRNFFSKKIY 10 Unmodified _NRNFFSKKIY_ 0 0 0 L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.5755310058594 3 439.575178 1315.70371 0.054034 2.3752E-05 -0.25207 -0.0001108 -0.19803 -8.7051E-05 439.5750427030806 37.451 1.2253 41.114 40.644 41.869 3.663 237 126 2 0 0 0 0.55068 3 6212 6212;6335;6371 5.4027 5.4027 1 209620 29081 10882 18413 18424 33655;33656;33657 33655 0.05848170071385539 NRNFFSKKIY 10 Unmodified _NRNFFSKKIY_ 0 0 0 L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense L1MB7_dup8485|chr7:36717906-36718969:+|1.1383923121305275|0.0176753457574022|6.01|150.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 439.575178 1315.70371 0.0033282 1.463E-06 -0.17432 -7.6629E-05 -0.171 -7.5166E-05 439.9095717207518 37.246 0.042469 40.753 40.73 40.773 3.507 -0.22139 9.8879E-05 NaN 5.4027 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 64506 29082 10882 18413 18424 0.05848170071385539 NRNIKKSV 8 Unmodified _NRNIKKSV_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MSMS UPN48_class_I_Rep_1 5 479.79315185546875 2 479.793258 957.571963 NaN NaN NaN NaN NaN NaN NaN 83.818 1 87.415 86.915 87.915 3.5973 0 0 0 0.40625 1 20054 20054 2.3027 0 1 + 29083 19557 18414 18425 33658 33658 0.09147984774278939 NRNSPVKK 8 Unmodified _NRNSPVKK_ 0 0 0 REV__ENST00000398022.6_1_20:30753455-30753596:+|nuORF REV__ENST00000398022.6_1_20:30753455-30753596:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 115.41 1 118.89 118.39 119.39 3.4802 0 0 0 0.40604 1 28380 28380 2.5775 0 1 + 29084 22138 18415 18426 33659 33659 0.06755411740186901 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MSMS UPN46_class_I_Rep_3 1 488.2902526855469 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 108.87 1 108.87 108.37 109.37 0 0 0 0 0.39819 1 26665 26665 8.5933 1.304 1 29085 12146 18416 18427 33660 33660 0.0778488626260696 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.29083251953125 2 488.290351 974.566149 0.45624 0.00022278 0.17754 8.6691E-05 0.63378 0.00030947 488.2902290001445 108.72 0.30786 112.25 112.17 112.47 3.5333 41 31 2 0 0 0 0.82752 1 26393 26393 8.5933 0.68312 1 3669900 29086 12146 18416 18427 33661 33661 0.0778488626260696 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.2911376953125 2 488.290351 974.566149 0.23437 0.00011444 0.31444 0.00015354 0.54881 0.00026798 488.29050682895917 108.72 0.19998 112.26 112.16 112.36 3.5382 34 21 2 0 0 0 0.82752 1 26639 26639 8.5933 1.304 1 3885200 29087 12146 18416 18427 33662 33662 0.0778488626260696 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MSMS UPN48_class_I_Rep_1 5 488.2904052734375 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 108.71 1 112.34 111.84 112.84 3.6321 0 0 0 0.39819 1 26324 26324 8.5933 0 1 29088 12146 18416 18427 33663 33663 0.0778488626260696 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.29119873046875 2 488.290351 974.566149 0.25723 0.0001256 0.61396 0.00029979 0.87119 0.00042539 488.2909565508828 107.89 0.035278 111.56 111.55 111.59 3.6746 6 4 2 0 0 0 0.82752 1 25540 25540 5.2307 0.47466 1 760540 29089 12146 18416 18427 33664 33664 0.0778488626260696 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 488.290351 974.566149 0.2572 0.00012559 0.35917 0.00017538 0.61637 0.00030097 488.29048519377693 108.74 0.24107 112.41 112.23 112.47 3.6746 0.080374 9.0655E-05 NaN 8.5933 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3357400 29090 12146 18416 18427 0.0778488626260696 NRPAKYVK 8 Unmodified _NRPAKYVK_ 0 0 0 L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|52|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 488.290351 974.566149 0.23707 0.00011576 0.13666 6.6732E-05 0.37373 0.00018249 488.2902090729828 108.7 0.13863 112.38 112.34 112.48 3.6751 0.042925 -0.00012664 NaN 8.5933 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2461000 29091 12146 18416 18427 0.0778488626260696 NRPIKNKLH 9 Unmodified _NRPIKNKLH_ 0 0 0 REV__L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|1|1|sense REV__L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3406372070312 2 560.340907 1118.66726 0.6348 0.00035571 -1.2287 -0.00068848 -0.59388 -0.00033278 560.3402835293091 94.977 0.1539 98.45 98.353 98.507 3.4737 26 19 2 0 0 0 0.50088 1 23379 23379 0.52476 0 1 109840 + 29092 29382 18417 18428 33665 33665 0.11267337965296065 NRPIKNKLH 9 Unmodified _NRPIKNKLH_ 0 0 0 REV__L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|1|1|sense REV__L1PA16_dup4465|chr5:62324101-62325031:+|3.9865655724801967|0.0958743110683589|5.38|151.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 560.340907 1118.66726 0.6348 0.00035571 -1.2287 -0.00068848 -0.59388 -0.00033278 560.3402835293091 94.977 0.1539 98.45 98.353 98.507 3.4737 0.044711 7.0171E-05 NaN 0.52476 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 109840 + 29093 29382 18417 18428 0.11267337965296065 NRPKAAKF 8 Unmodified _NRPKAAKF_ 0 0 0 REV__nc|ENSG00000129116|Q8WX93-2|PALLD REV__nc|ENSG00000129116|Q8WX93-2|PALLD MSMS UPN46_class_I_Rep_3 1 466.2774353027344 2 466.277244 930.539935 NaN NaN NaN NaN NaN NaN NaN 108.84 1 108.84 108.34 109.34 0 0 0 0 0.39819 1 26654 26654 8.5933 0 1 + 29094 18917 18418 18429 33666 33666 0.07188617091128435 NRPKKFFV 8 Unmodified _NRPKKFFV_ 0 0 0 REV__ENSG00000130638.17,ATXN10,chr22,+,I17.1,45807105,45811697|23|11.18|3|intron REV__ENSG00000130638.17,ATXN10,chr22,+,I17.1,45807105,45811697|23|11.18|3|intron MULTI-MSMS UPN48_class_I_Rep_2 6 518.3085327148438 2 518.308544 1034.60253 0.35851 0.00018582 0.58189 0.0003016 0.9404 0.00048742 518.3083265580332 108.73 1.6636 112.41 112.29 113.95 3.6746 457 209 4 0 0 0 0.82752 1 25997 25997 2.3027 2.3027 1 133200000 + 29095 18944 18419 18430 33667 33667 0.08661763159329894 NRPKRPDRL 9 Unmodified _NRPKRPDRL_ 0 0 0 REV__ENST00000418063.2_1_19:20188841-20215064:+|nuORF REV__ENST00000418063.2_1_19:20188841-20215064:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 576.3428344726562 2 576.341438 1150.66832 0.49616 0.00028596 -0.1136 -6.5475E-05 0.38255 0.00022048 576.3411893314752 107.99 0.25129 107.99 107.93 108.18 0 24 16 2 0 0 0 0.24936 1 26367 26367 17.113 2.7075 1 19799000 + 29096 22230 18420 18431 33668 33668 0.0990155233423593 NRPPKRQKK 9 Unmodified _NRPPKRQKK_ 0 0 0 REV__L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|122|3|sense REV__L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|122|3|sense MSMS UPN47_class_I_Rep_1 2 576.360107421875 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 86.277 1 89.893 89.393 90.393 3.6153 0 0 0 0.4007 1 21550 21550 0.52476 0 1 + 29097 29795 18421 18432 33669 33669 0.1353842923092543 NRPPKRQKK 9 Unmodified _NRPPKRQKK_ 0 0 0 REV__L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|122|3|sense REV__L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|122|3|sense MSMS UPN48_class_I_Rep_3 7 576.36083984375 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 85.443 1 89.192 88.692 89.692 3.7494 0 0 0 0.4007 1 20260 20260 0.52476 0.12405 1 + 29098 29795 18421 18432 33670 33670 0.1353842923092543 NRPRLVRILA 10 Unmodified _NRPRLVRILA_ 0 0 0 REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MSMS UPN47_class_I_Rep_1 2 604.726806640625 2 604.390931 1206.76731 NaN NaN NaN NaN NaN NaN NaN 106.31 1 110.01 109.51 110.51 3.7088 0 0 0 0.53105 1 26066 26066 1.6526 0 1 + 29099 18875 18422 18433 33671 33671 0.17219575299145617 NRQFRNCI 8 Unmodified _NRQFRNCI_ 0 0 0 ENSG00000269433|ENST00000599405|OPN1MW3;ENSG00000268221|ENST00000595290|OPN1MW;ENSG00000166160|ENST00000369929|OPN1MW2;ENSG00000102076|ENST00000369951|OPN1LW ENSG00000269433|ENST00000599405|OPN1MW3 ENSG00000269433|ENST00000599405|OPN1MW3 MSMS UPN48_class_I_Rep_2 6 525.766845703125 2 525.766717 1049.51888 NaN NaN NaN NaN NaN NaN NaN 59.128 1 62.627 62.127 63.127 3.4987 0 0 0 0.40404 1 12942 12942 5.2307 0.47466 1 29100 1602 18423 18434 33672 33672 -0.0038971628005128878 NRQKLKQI 8 Unmodified _NRQKLKQI_ 0 0 0 REV__L1MC4_dup16255|chr11:11916394-11916857:+|1.1220913504062984|0.1577283983394289|2.83|151.0|13|3|sense REV__L1MC4_dup16255|chr11:11916394-11916857:+|1.1220913504062984|0.1577283983394289|2.83|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 514.2229614257812 2 514.322183 1026.62981 NaN NaN NaN NaN NaN NaN NaN 80.725 1 84.213 83.713 84.713 3.4874 0 0 0 0.40746 1 20117 20117 0.69038 0 1 + 29101 26829 18424 18435 33673 33673 0.11756246699701478 NRQKRRHP 8 Unmodified _NRQKRRHP_ 0 0 0 REV__MER6B_dup156|chr3:172151720-172151912:+|1.0872794696292167|0.0116934598315531|6.54|151.0|11|3|anti-sense REV__MER6B_dup156|chr3:172151720-172151912:+|1.0872794696292167|0.0116934598315531|6.54|151.0|11|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 545.8292846679688 2 546.318297 1090.62204 0.49106 0.00026828 -2.5508 -0.0013935 -2.0597 -0.0011253 546.8198529557062 54.273 0.087433 57.592 57.56 57.647 3.3187 6 4 2 0 0 0 0.72333 1 12252 12252 2.3027 0.24298 1 28452 + 29102 31550 18425 18436 33674 33674 0.08035532222788788 NRQKVFLA 8 Unmodified _NRQKVFLA_ 0 0 0 REV__L1ME3F_dup2955|chr10:128074963-128075280:-|1.4197124566446435|0.0240430394383811|5.88|150.0|5|2|sense REV__L1ME3F_dup2955|chr10:128074963-128075280:-|1.4197124566446435|0.0240430394383811|5.88|150.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 488.2912902832031 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 109.89 1 109.89 109.39 110.39 0 0 0 0 0.4044 1 27032 27032 4.756 0.81161 1 + 29103 28173 18426 18437 33675 33675 0.07784886262618329 NRQNKKKYLQI 11 Unmodified _NRQNKKKYLQI_ 0 0 0 L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|51|3|sense L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|51|3|sense L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.28387451171875 3 478.284287 1431.83103 -0.38599 -0.00018461 -0.37661 -0.00018013 -0.7626 -0.00036474 478.28427254074893 13.395 0.44394 16.852 16.75 17.194 3.457 110 52 3 0 0 0 0.68024 1 309 309 0.50596 0.41111 1 71957 29104 10601 18427 18438 33676 33676 0.13238890945558524 NRQRQLSLM 9 Unmodified _NRQRQLSLM_ 0 0 0 REV__ENST00000404424.5_1_2:29336886-29336964:+|nuORF REV__ENST00000404424.5_1_2:29336886-29336964:+|nuORF MSMS UPN46_class_I_Rep_3 1 573.800048828125 2 573.314032 1144.61351 NaN NaN NaN NaN NaN NaN NaN 61.829 1 61.829 61.329 62.329 0 0 0 0 0.39518 1 13785 13785 1.8442 0.36234 1 + 29105 22168 18428 18439 33677 33677 0.04698797471291982 NRQVLRYKG 9 Unmodified _NRQVLRYKG_ 0 0 0 REV__ENST00000561277.5_1_15:77345185-77345266:-|nuORF REV__ENST00000561277.5_1_15:77345185-77345266:-|nuORF MSMS UPN46_class_I_Rep_3 1 567.3302001953125 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 99.318 1 99.318 98.818 99.818 0 0 0 0 0.4007 1 24192 24192 0.52476 0 1 + 29106 23027 18429 18440 33678 33678 0.08550747585650242 NRRKPARIFL 10 Unmodified _NRRKPARIFL_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-6|PBRM1 REV__nc|ENSG00000163939|Q86U86-6|PBRM1 MULTI-SECPEP UPN47_class_I_Rep_2 3 423.59747314453125 3 424.266679 1269.77821 -0.324 -0.00013746 -0.13689 -5.8078E-05 -0.46088 -0.00019554 424.26664733305336 98.404 0.17703 101.89 101.76 101.93 3.4897 29 24 2 0 0 0 0.84575 1 24112 24112 1.7423 0 1 125280 + 29107 20020 18430 18441 33679 33679 0.1541097767340034 NRRMKKKR 8 Unmodified _NRRMKKKR_ 0 0 0 ENSG00000170178|ENST00000406506|HOXD12;ENSG00000123407|ENST00000243103|HOXC12 ENSG00000170178|ENST00000406506|HOXD12 ENSG00000170178|ENST00000406506|HOXD12 MSMS UPN48_class_I_Rep_3 7 558.850341796875 2 558.848376 1115.6822 NaN NaN NaN NaN NaN NaN NaN 89.561 1 93.39 92.89 93.89 3.8293 0 0 0 0.40746 1 21264 21264 0.69038 0.16561 1 29108 2424 18431 18442 33680 33680 0.1289850656166891 NRRNNIKL 8 Unmodified _NRRNNIKL_ 0 0 0 REV__L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|29|2|sense REV__L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 514.3109741210938 2 514.309606 1026.60466 NaN NaN NaN NaN NaN NaN NaN 58.454 1 61.941 61.441 62.441 3.487 0 0 0 0.39819 1 12756 12756 8.5933 1.304 1 + 29109 24214 18432 18443 33681 33681 0.0924219189712403 NRRNVFYY 8 Unmodified _NRRNVFYY_ 0 0 0 L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|43|1|sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|43|1|sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|43|1|sense MSMS UPN47_class_I_Rep_1 2 566.2885131835938 2 566.28834 1130.56213 NaN NaN NaN NaN NaN NaN NaN 70.557 1 73.929 73.429 74.429 3.3713 0 0 0 0.40604 1 17153 17153 2.5775 0 1 29110 9686 18433 18444 33682 33682 0.0020679676890722476 NRRPRIKLFID 11 Unmodified _NRRPRIKLFID_ 0 0 0 MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.62347412109375 3 476.624643 1426.8521 0.21502 0.00010249 -1.2852 -0.00061254 -1.0701 -0.00051006 476.6239763176401 104.56 0.31168 108.28 108.21 108.52 3.7192 52 44 2 0 0 0 0.65891 1 24729 24729 2.4348 1.22 1 4280600 29111 16030 18434 18445 33683 33683 0.15574901045056322 NRRPRIKLFID 11 Unmodified _NRRPRIKLFID_ 0 0 0 MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 476.624643 1426.8521 0.23777 0.00011333 -0.42015 -0.00020025 -0.18238 -8.6928E-05 476.6241833843302 104.87 0.019897 108.61 108.6 108.62 3.7395 0.15369 0.0015192 NaN 2.4348 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 844070 29112 16030 18434 18445 0.15574901045056322 NRRPRIKLFID 11 Unmodified _NRRPRIKLFID_ 0 0 0 MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 476.624643 1426.8521 0.3265 0.00015562 -1.5321 -0.00073023 -1.2056 -0.00057462 476.9579637526013 104.89 0.033035 108.42 108.4 108.44 3.5327 -0.037161 -7.0725E-05 NaN 2.4348 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2651300 29113 16030 18434 18445 0.15574901045056322 NRRPRIKLFID 11 Unmodified _NRRPRIKLFID_ 0 0 0 MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 476.624643 1426.8521 0.10205 4.864E-05 -1.7036 -0.00081198 -1.6016 -0.00076334 476.6237422847598 104.89 0.1376 108.51 108.46 108.6 3.6247 0.05781 -0.00031596 NaN 2.4348 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1833400 29114 16030 18434 18445 0.15574901045056322 NRRRELVF 8 Unmodified _NRRRELVF_ 0 0 0 REV__L1MC4a_dup6404|chr10:74994821-74995803:-|2.4586232740981364|0.0501083021724955|5.62|151.0|2|1|sense REV__L1MC4a_dup6404|chr10:74994821-74995803:-|2.4586232740981364|0.0501083021724955|5.62|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.31689453125 2 545.317432 1088.62031 0.37672 0.00020543 -1.013 -0.00055241 -0.63628 -0.00034697 545.3168723704365 83.944 0.20702 83.944 83.856 84.063 0 32 24 2 0 0 0 0.82752 1 19968 19968 4.756 4.756 1 192710 + 29115 27007 18435 18446 33684 33684 0.07954478414194455 NRRRKKVR 8 Unmodified _NRRRKKVR_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|35|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|35|1|sense MSMS UPN46_class_I_Rep_3 1 556.8656005859375 2 556.865415 1111.71628 NaN NaN NaN NaN NaN NaN NaN 99.443 1 99.443 98.943 99.943 0 0 0 0 0.40746 1 24226 24226 0.69038 0.16561 1 + 29116 23630 18436 18447 33685 33685 0.16488671044930925 NRRRNIFI 8 Unmodified _NRRRNIFI_ 0 0 0 REV__L1MB2_dup6766|chr14:90926717-90927888:+|1.0915327014028464|0.040082381710328|4.77|151.0|11|1|sense REV__L1MB2_dup6766|chr14:90926717-90927888:+|1.0915327014028464|0.040082381710328|4.77|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 544.8248901367188 2 544.825424 1087.63629 NaN NaN NaN NaN NaN NaN NaN 89.929 1 93.555 93.055 94.055 3.6255 0 0 0 0.40738 1 21611 21611 0.79363 0 1 + 29117 25761 18437 18448 33686 33686 0.09598184651076735 NRRRRKMWTVK 11 Unmodified _NRRRRKMWTVK_ 0 0 0 REV__ENST00000264447.8_1_2:71650545-71650620:+|nuORF REV__ENST00000264447.8_1_2:71650545-71650620:+|nuORF MSMS UPN48_class_I_Rep_1 5 510.9687194824219 3 510.968527 1529.88375 NaN NaN NaN NaN NaN NaN NaN 96.2 1 99.812 99.312 100.31 3.6124 0 0 0 0.38417 1 23170 23170 0.094841 0 1 + 29118 21579 18438 18449 33687 33687 0.14000570527355194 NRRRVPWF 8 Unmodified _NRRRVPWF_ 0 0 0 REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|7|2|sense REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 565.8221435546875 2 565.820141 1129.62573 NaN NaN NaN NaN NaN NaN NaN 39.847 1 43.352 42.852 43.852 3.5048 0 0 0 0.40738 1 7083 7083 0.79363 0.10326 1 + 29119 31774 18439 18450 33688 33688 0.06610201996636533 NRRRVPWF 8 Unmodified _NRRRVPWF_ 0 0 0 REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|7|2|sense REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 565.8201904296875 2 565.820141 1129.62573 NaN NaN NaN NaN NaN NaN NaN 112.77 1 116.43 115.93 116.93 3.6648 0 0 0 0.40738 1 26883 26883 0.79363 0 1 + 29120 31774 18439 18450 33689 33689 0.06610201996636533 NRRSNLPE 8 Unmodified _NRRSNLPE_ 0 0 0 REV__ENSG00000166869|ENST00000300113|CHP2 REV__ENSG00000166869|ENST00000300113|CHP2 MSMS UPN47_class_I_Rep_2 3 493.2625427246094 2 493.262322 984.510091 NaN NaN NaN NaN NaN NaN NaN 64.344 1 67.599 67.099 68.099 3.2556 0 0 0 0.40501 1 15322 15322 3.9444 0.3479 1 + 29121 20195 18440 18451 33690 33690 0.017216333551345997 NRRTLPPY 8 Unmodified _NRRTLPPY_ 0 0 0 REV__L1PA4_dup8318|chr10:32754653-32760755:+|1.3144528340537596|0.2516192006831281|2.39|151.0|297|2|anti-sense REV__L1PA4_dup8318|chr10:32754653-32760755:+|1.3144528340537596|0.2516192006831281|2.39|151.0|297|2|anti-sense MSMS UPN46_class_I_Rep_3 1 508.7875061035156 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 44.123 1 44.123 43.623 44.623 0 0 0 0 0.40581 1 8865 8865 2.8892 0.31174 1 + 29122 29681 18441 18452 33691 33691 0.04915698257218537 NRRVPRPR 8 Unmodified _NRRVPRPR_ 0 0 0 REV__L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|321|2|anti-sense REV__L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|321|2|anti-sense MSMS UPN48_class_I_Rep_1 5 525.8242797851562 2 525.823215 1049.63188 NaN NaN NaN NaN NaN NaN NaN 71.83 1 75.296 74.796 75.796 3.466 0 0 0 0.40746 1 16822 16822 0.69038 0 1 + 29123 29015 18442 18453 33692 33692 0.10904720228154474 NRRWLERVK 9 Unmodified _NRRWLERVK_ 0 0 0 ENST00000528706.5_1_11:117279912-117282881:+|nuORF;ENST00000533675.5_1_11:117265793-117282881:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164 ENST00000528706.5_1_11:117279912-117282881:+|nuORF ENST00000528706.5_1_11:117279912-117282881:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.8704223632812 2 628.870363 1255.72617 NaN NaN NaN NaN NaN NaN NaN 56.239 1 56.239 55.739 56.739 0 0 0 0 0.39518 1 12258 12258 1.8442 0.36234 1 29124 1933 18443 18454 33693 33693 0.10853814259621686 NRRWQHVED 9 Unmodified _NRRWQHVED_ 0 0 0 REV__ENST00000459871.1_1_20:17445809-17462712:+|nuORF REV__ENST00000459871.1_1_20:17445809-17462712:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 620.3016967773438 2 620.30251 1238.59047 0.052682 3.2679E-05 -0.6104 -0.00037863 -0.55772 -0.00034595 620.8039281280705 13.799 0.46098 13.799 13.639 14.1 0 84 52 2 0 0 0 0.50088 1 499 499 0.52476 0.52476 1 66194 + 29125 18845 18444 18455 33694 33694 -0.01928505321825469 NRRYRRQPP 9 Unmodified _NRRYRRQPP_ 0 0 0 REV__ENST00000442962.2_1_9:112295731-112296019:-|nuORF REV__ENST00000442962.2_1_9:112295731-112296019:-|nuORF MSMS UPN48_class_I_Rep_3 7 621.8500366210938 2 621.849961 1241.68537 NaN NaN NaN NaN NaN NaN NaN 78.072 1 81.693 81.193 82.193 3.6216 0 0 0 0.4007 1 18472 18472 0.52476 0 1 + 29126 17760 18445 18456 33695 33695 0.07419472940023297 NRSPKKNLY 9 Unmodified _NRSPKKNLY_ 0 0 0 REV__Charlie7_dup2008|chr8:97677521-97678602:+|2.299023317419177|0.085834106518252|4.74|151.0|66|2|anti-sense REV__Charlie7_dup2008|chr8:97677521-97678602:+|2.299023317419177|0.085834106518252|4.74|151.0|66|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.316162109375 2 560.317097 1118.61964 NaN NaN NaN NaN NaN NaN NaN 76.911 1 80.242 79.742 80.742 3.3315 0 0 0 0.38299 1 19054 19054 4.756 0 1 + 29127 17392 18446 18457 33696 33696 0.06507638974471774 NRSPSRLL 8 Unmodified _NRSPSRLL_ 0 0 0 REV__HERVK9-int_dup315|chr7:152041271-152043490:-|1.0628868882723146|0.038323247889474|4.79|149.0|129|3|anti-sense REV__HERVK9-int_dup315|chr7:152041271-152043490:-|1.0628868882723146|0.038323247889474|4.79|149.0|129|3|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7764587402344 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 82.8 1 86.387 85.887 86.887 3.5871 0 0 0 0.40625 1 19784 19784 2.3027 0 1 + 29128 23838 18447 18458 33697 33697 0.0675541174019827 NRSRKPKW 8 Unmodified _NRSRKPKW_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 536.3116455078125 2 536.312149 1070.60975 0.34856 0.00018694 -1.0234 -0.00054887 -0.67486 -0.00036193 536.3114269497743 92.954 0.38688 92.954 92.695 93.082 0 54 37 3 0 0 0 0.82752 1 22515 22515 0.6015 0.6015 1 3041900 + 29129 25027 18448 18459 33698 33698 0.07726495759743557 NRSRKPKW 8 Unmodified _NRSRKPKW_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 536.312149 1070.60975 0.34856 0.00018694 -1.0234 -0.00054887 -0.67486 -0.00036193 536.3114269497743 92.954 0.38688 92.954 92.695 93.082 0 -0.18642 0.00039051 NaN 0.6015 54 37 3 NaN NaN NaN NaN 0 NaN NaN 0 3041900 + 29130 25027 18448 18459 0.07726495759743557 NRSRKPKW 8 Unmodified _NRSRKPKW_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 536.312149 1070.60975 0.47015 0.00025215 -1.3448 -0.00072123 -0.87464 -0.00046908 536.3113658207116 89.443 0.35579 93.116 92.856 93.212 3.6738 -0.023751 4.5795E-05 NaN 0.6015 64 40 2 NaN NaN NaN NaN 0 NaN NaN 0 76733 + 29131 25027 18448 18459 0.07726495759743557 NRSRKPKW 8 Unmodified _NRSRKPKW_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 536.312149 1070.60975 0.47004 0.00025209 -1.5662 -0.00083995 -1.0961 -0.00058787 536.3112512892204 89.755 0.29668 93.153 92.969 93.266 3.3976 0.012479 -0.00019166 NaN 0.6015 50 35 2 NaN NaN NaN NaN 0 NaN NaN 0 72962 + 29132 25027 18448 18459 0.07726495759743557 NRSRKPKW 8 Unmodified _NRSRKPKW_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 536.312149 1070.60975 0.35273 0.00018917 -1.1866 -0.0006364 -0.8339 -0.00044723 536.311351627177 89.638 0.29765 93.264 93.106 93.403 3.6255 0.1234 0.00021544 NaN 0.6015 60 30 3 NaN NaN NaN NaN 0 NaN NaN 0 548400 + 29133 25027 18448 18459 0.07726495759743557 NRSRKPKW 8 Unmodified _NRSRKPKW_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|99|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 536.312149 1070.60975 0.45354 0.00024324 -1.401 -0.00075135 -0.94742 -0.00050811 536.311261631615 89.477 2.5147 93.214 91.586 94.1 3.7379 0.074299 -1.445E-05 NaN 0.6015 480 319 3 NaN NaN NaN NaN 0 NaN NaN 0 471440 + 29134 25027 18448 18459 0.07726495759743557 NRTKLPLHKG 10 Unmodified _NRTKLPLHKG_ 0 0 0 REV__L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|46|2|sense REV__L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|46|2|sense MSMS UPN47_class_I_Rep_2 3 582.3538208007812 2 582.354014 1162.69348 NaN NaN NaN NaN NaN NaN NaN 96.164 1 99.644 99.144 100.14 3.4791 0 0 0 0.53105 1 23641 23641 1.6526 1.0511 1 + 29135 25787 18449 18460 33699 33699 0.1186360713677459 NRVGEQKTF 9 Unmodified _NRVGEQKTF_ 0 0 0 REV__ENSG00000141447|ENST00000319481|OSBPL1A REV__ENSG00000141447|ENST00000319481|OSBPL1A MULTI-SECPEP UPN47_class_I_Rep_1 2 540.3087158203125 2 539.78563 1077.55671 0.35994 0.00019429 1.8157 0.00098006 2.1756 0.0011744 540.2889658046213 66.681 0.10364 70.038 69.988 70.092 3.3576 6 5 2 0 0 0 0.12477 1 15989 15989 1.6526 0 1 30578 + 29136 19376 18450 18461 33700 33700 0.02103073186435722 NRVIVGRG 8 Unmodified _NRVIVGRG_ 0 0 0 LTR5_Hs_dup70|chr1:246082685-246083636:+|2.093592189136825|0.0276166685307523|6.24|151.0|47|3|anti-sense LTR5_Hs_dup70|chr1:246082685-246083636:+|2.093592189136825|0.0276166685307523|6.24|151.0|47|3|anti-sense LTR5_Hs_dup70|chr1:246082685-246083636:+|2.093592189136825|0.0276166685307523|6.24|151.0|47|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 435.7669677734375 2 435.767043 869.519533 0.099858 4.3515E-05 -0.034032 -1.483E-05 0.065826 2.8685E-05 435.76692608008307 78.73 1.0701 82.363 81.965 83.036 3.6331 231 127 2 0 0 0 0.82752 1 18768 18768 2.5775 0.27475 1 420760 29137 15670 18451 18462 33701 33701 0.07955446431333257 NRVKHHLK 8 Unmodified _NRVKHHLK_ 0 0 0 AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 516.3133544921875 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 107.08 1 107.08 106.58 107.58 0 0 0 0 0.40746 1 26122 26122 0.69038 0 1 29138 221 18452 18463 33702 33702 0.10074799622339015 NRVKHHLK 8 Unmodified _NRVKHHLK_ 0 0 0 AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 516.3146362304688 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 91.198 1 94.659 94.159 95.159 3.4613 0 0 0 0.40746 1 22588 22588 0.69038 0 1 29139 221 18452 18463 33703 33703 0.10074799622339015 NRVKHHLK 8 Unmodified _NRVKHHLK_ 0 0 0 AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense AluSg7_dup1416|chr3:41215096-41215404:+|1.560588621841018|0.1489888976569742|3.39|151.0|12|3|sense MSMS UPN47_class_I_Rep_3 4 516.3143310546875 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 91.242 1 94.643 94.143 95.143 3.401 0 0 0 0.40604 1 22831 22831 2.5775 1.0956 1 29140 221 18452 18463 33704 33704 0.10074799622339015 NRVKREPIR 9 Unmodified _NRVKREPIR_ 0 0 0 REV__L1PBa1_dup143|chr5:119255193-119256832:+|1.979968830779282|0.0373079369316929|5.73|150.0|82|2|anti-sense REV__L1PBa1_dup143|chr5:119255193-119256832:+|1.979968830779282|0.0373079369316929|5.73|150.0|82|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.35693359375 2 584.357088 1166.69962 0.52559 0.00030713 -1.3867 -0.00081034 -0.86113 -0.00050321 584.3561364731526 87.279 0.14909 87.279 87.208 87.357 0 20 12 2 0 0 0 0.5015 1 20897 20897 0.45834 0.057624 1 236780 + 29141 30674 18453 18464 33705 33705 0.12294125368293862 NRVLRRGLY 9 Unmodified _NRVLRRGLY_ 0 0 0 L1MEc_dup15171|chr14:77523178-77524106:+|11.307387080295497|0.1661057615652292|6.09|151.0|6|1|sense L1MEc_dup15171|chr14:77523178-77524106:+|11.307387080295497|0.1661057615652292|6.09|151.0|6|1|sense L1MEc_dup15171|chr14:77523178-77524106:+|11.307387080295497|0.1661057615652292|6.09|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 573.84814453125 2 573.846356 1145.67816 NaN NaN NaN NaN NaN NaN NaN 76.345 1 79.76 79.26 80.26 3.4149 0 0 0 0.39518 1 18888 18888 1.8442 0.19162 1 29142 13032 18454 18465 33706 33706 0.11114740339621676 NRVRGVLNWS 10 Unmodified _NRVRGVLNWS_ 0 0 0 ENST00000541190.5_1_18:33709896-33716400:+|nuORF;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 ENST00000541190.5_1_18:33709896-33716400:+|nuORF ENST00000541190.5_1_18:33709896-33716400:+|nuORF MSMS UPN48_class_I_Rep_2 6 600.8322143554688 2 600.833446 1199.65234 NaN NaN NaN NaN NaN NaN NaN 71.209 1 74.759 74.259 75.259 3.5505 0 0 0 0.53105 1 16600 16600 1.4819 0.28856 1 29143 2865 18455 18466 33707 33707 0.06049846097334921 NRVSHLLTI 9 Unmodified _NRVSHLLTI_ 0 0 0 REV__L1M4_dup14850|chr12:76365242-76366786:-|1.278650531900179|0.126701307592906|3.34|151.0|47|3|sense REV__L1M4_dup14850|chr12:76365242-76366786:-|1.278650531900179|0.126701307592906|3.34|151.0|47|3|sense MSMS UPN46_class_I_Rep_3 1 526.816162109375 2 526.81419 1051.61383 NaN NaN NaN NaN NaN NaN NaN 78.085 1 78.085 77.585 78.585 0 0 0 0 0.11494 1 18275 18275 21.747 4.8044 1 + 29144 24374 18456 18467 33708 33708 0.09008540462809833 NRVTIFSMVT 10 Unmodified _NRVTIFSMVT_ 0 0 0 HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|154|3|anti-sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|154|3|anti-sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|154|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3106079101562 2 584.313166 1166.61178 NaN NaN NaN NaN NaN NaN NaN 102.5 1 102.5 102 103 0 0 0 0 0.53105 1 25014 25014 1.3295 0 1 29145 8264 18457 18468 33709 33709 0.03513743662665547 NRWLFYFIALF 11 Unmodified _NRWLFYFIALF_ 0 0 0 REV__L1MB7_dup7207|chr5:179952213-179954726:+|1.5524902454483147|0.0217576330848255|6.16|149.0|99|1|anti-sense REV__L1MB7_dup7207|chr5:179952213-179954726:+|1.5524902454483147|0.0217576330848255|6.16|149.0|99|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.27117919921875 3 497.271207 1488.79179 NaN NaN NaN NaN NaN NaN NaN 37.942 1 41.447 40.947 41.947 3.5052 0 0 0 0.38417 1 6511 6511 0.094841 0 1 + 29146 26303 18458 18469 33710 33710 0.06694790661981642 NRWNHIIY 8 Unmodified _NRWNHIIY_ 0 0 0 L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|72|3|anti-sense L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|72|3|anti-sense L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|72|3|anti-sense MSMS UPN47_class_I_Rep_3 4 558.2841796875 2 558.290882 1114.56721 NaN NaN NaN NaN NaN NaN NaN 71.664 1 74.882 74.382 75.382 3.2188 0 0 0 0.36148 1 17597 17597 19.439 0 1 29147 10924 18459 18470 33711 33711 0.014511006315160557 NRYGMTDPFY 10 Unmodified _NRYGMTDPFY_ 0 0 0 REV__THE1B-int_dup366|chr2:47406434-47408004:+|1.3664022190372036|0.0296643788274971|5.53|151.0|71|2|anti-sense REV__THE1B-int_dup366|chr2:47406434-47408004:+|1.3664022190372036|0.0296643788274971|5.53|151.0|71|2|anti-sense MSMS UPN46_class_I_Rep_3 1 421.8537902832031 3 421.853612 1262.53901 NaN NaN NaN NaN NaN NaN NaN 111.63 1 111.63 111.13 112.13 0 0 0 0 0.53105 1 27531 27531 0.15932 0 1 + 29148 32266 18460 18471 33712 33712 -0.0817601013075091 NRYHVRWF 8 Unmodified _NRYHVRWF_ 0 0 0 ENSG00000011201|ENST00000262648|ANOS1 ENSG00000011201|ENST00000262648|ANOS1 ENSG00000011201|ENST00000262648|ANOS1 MSMS UPN48_class_I_Rep_3 7 589.3038330078125 2 589.304324 1176.5941 NaN NaN NaN NaN NaN NaN NaN 26.41 1 30.176 29.676 30.676 3.7663 0 0 0 0.40746 1 3338 3338 0.69038 0 1 29149 769 18461 18472 33713 33713 0.012862092426757954 NRYKKNRK 8 Unmodified _NRYKKNRK_ 0 0 0 L1MA1_dup2069|chr9:34244147-34244464:-|1.0661908179785824|0.1552871965659822|2.78|151.0|3|1|sense L1MA1_dup2069|chr9:34244147-34244464:-|1.0661908179785824|0.1552871965659822|2.78|151.0|3|1|sense L1MA1_dup2069|chr9:34244147-34244464:-|1.0661908179785824|0.1552871965659822|2.78|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 553.8294067382812 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 93.588 1 96.993 96.493 97.493 3.4052 0 0 0 0.40746 1 23323 23323 0.69038 0 1 29150 9275 18462 18473 33714 33714 0.09826167305504896 NRYPGTIII 9 Unmodified _NRYPGTIII_ 0 0 0 REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|45|1|sense REV__L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|45|1|sense MSMS UPN46_class_I_Rep_3 1 523.8054809570312 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 95.334 1 95.334 94.834 95.834 0 0 0 0 0.39518 1 23142 23142 1.8442 0.36234 1 + 29151 30190 18463 18474 33715 33715 0.0710573571425357 NRYSFFNFD 9 Unmodified _NRYSFFNFD_ 0 0 0 REV__L1ME4b_dup6570|chr5:76873924-76874172:-|1.975657719638606|0.0066761403241792|8.21|149.0|7|2|sense REV__L1ME4b_dup6570|chr5:76873924-76874172:-|1.975657719638606|0.0066761403241792|8.21|149.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 605.2697143554688 2 605.269813 1208.52507 NaN NaN NaN NaN NaN NaN NaN 62.253 1 65.764 65.264 66.264 3.5104 0 0 0 0.38916 1 13823 13823 3.2813 0 1 + 29152 28303 18464 18475 33716 33716 -0.07084919567523684 NRYTRFLMTS 10 Unmodified _NRYTRFLMTS_ 0 0 0 L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 644.8265991210938 2 644.826972 1287.63939 NaN NaN NaN NaN NaN NaN NaN 50.277 1 53.503 53.003 54.003 3.2262 0 0 0 0.53105 1 11093 11093 2.7352 0 1 29153 9156 18465 18476 33717 33717 0.007076469229104987 NRYTRFLMTS 10 Unmodified _NRYTRFLMTS_ 0 0 0 L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 644.8272705078125 2 644.826972 1287.63939 0.45781 0.00029521 -0.047383 -3.0554E-05 0.41043 0.00026465 644.8268582462288 49.952 0.64926 53.646 53.272 53.921 3.6946 69 41 2 0 0 0 0.55448 1 10097 10097 4.897 1.0207 1 208370 29154 9156 18465 18476 33718 33718 0.007076469229104987 NRYTRFLMTS 10 Unmodified _NRYTRFLMTS_ 0 0 0 L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense L1M5_dup39450|chr12:57352918-57353456:+|1.2476832223946344|0.0037564571479747|8.38|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 644.8280029296875 2 644.826972 1287.63939 0.53933 0.00034777 -0.18264 -0.00011777 0.35669 0.00023 645.328419494349 50.032 0.63428 53.653 53.416 54.05 3.621 78 38 3 0 0 0 0.55448 1 10184 10184 4.897 1.0207 1 241090 29155 9156 18465 18476 33719 33719 0.007076469229104987 NSAKRYNNF 9 Unmodified _NSAKRYNNF_ 0 0 0 L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|37|2|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|37|2|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|37|2|sense MSMS UPN47_class_I_Rep_2 3 557.2743530273438 2 557.275429 1112.53631 NaN NaN NaN NaN NaN NaN NaN 35.966 1 39.377 38.877 39.877 3.4114 0 0 0 0.37891 1 6693 6693 5.7319 2.1354 1 29156 9266 18466 18477 33720 33720 -0.015460974733969124 NSCLHQNLY 9 Unmodified _NSCLHQNLY_ 0 0 0 L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|18|2|sense L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|18|2|sense L1MD2_dup3377|chr5:180009118-180009965:+|4.84858788955968|0.0994448098552891|5.61|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 546.2486572265625 2 546.250566 1090.48658 NaN NaN NaN NaN NaN NaN NaN 31.312 1 34.611 34.111 35.111 3.2991 0 0 0 0.39518 1 5319 5319 1.8442 0.36234 1 29157 11989 18467 18478 33721 33721 -0.055045484736865546 NSCYEDYIRFK 11 Unmodified _NSCYEDYIRFK_ 0 0 0 REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 479.88958740234375 3 479.887093 1436.63945 -0.22776 -0.0001093 4.0731 0.0019546 3.8453 0.0018453 479.8896716736149 37.504 0.14383 40.903 40.816 40.96 3.3988 12 10 2 0 0 0 0.66092 1 7161 7161 2.2527 0.16672 1 47436 + 29158 17660 18468 18479 33722 33722 -0.06140397867784486 NSDFLVHFY 9 Unmodified _NSDFLVHFY_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS UPN47_class_I_Rep_1 2 571.26953125 2 571.269281 1140.52401 NaN NaN NaN NaN NaN NaN NaN 67.302 1 70.663 70.163 71.163 3.3611 0 0 0 0.35339 1 16177 16177 7.9102 2.1497 1 29159 5238 18469 18480 33723 33723 -0.04063133936415397 NSDFLVHFY 9 Unmodified _NSDFLVHFY_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS UPN47_class_I_Rep_1 2 571.2694091796875 2 571.269281 1140.52401 NaN NaN NaN NaN NaN NaN NaN 67.431 1 70.792 70.292 71.292 3.3611 0 0 0 0.036183 1 16216 16216 42.095 15.211 1 29160 5238 18469 18480 33724 33724 -0.04063133936415397 NSDFLVHFY 9 Unmodified _NSDFLVHFY_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS UPN47_class_I_Rep_2 3 571.2689819335938 2 571.269281 1140.52401 NaN NaN NaN NaN NaN NaN NaN 67.548 1 70.811 70.311 71.311 3.2636 0 0 0 0.36505 1 16298 16298 7.2892 3.3448 1 29161 5238 18469 18480 33725 33725 -0.04063133936415397 NSDFLVHFY 9 Unmodified _NSDFLVHFY_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS UPN47_class_I_Rep_3 4 571.7715454101562 2 571.269281 1140.52401 0.44053 0.00025166 0.51429 0.0002938 0.95481 0.00054546 571.7712935737231 67.797 0.29651 70.988 70.817 71.114 3.1914 32 24 2 0 0 0 0.33654 2 16431 16431;16453 11.64 4.3511 1 58332 29162 5238 18469 18480 33726;33727 33726 -0.04063133936415397 NSDTHSSTF 9 Unmodified _NSDTHSSTF_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;nc|ENSG00000111640|P04406-2|GAPDH ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS UPN47_class_I_Rep_2 3 498.2061462402344 2 498.206878 994.399203 -0.15892 -7.9176E-05 -0.45003 -0.00022421 -0.60895 -0.00030338 498.20659072438315 15.966 0.32982 19.353 19.202 19.532 3.3864 70 39 2 0 0 0 0.46869 1 933 933 3.9444 0.3479 1 46754 29163 1977 18470 18481 33728 33728 -0.09822051143601129 NSDTHSSTF 9 Unmodified _NSDTHSSTF_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;nc|ENSG00000111640|P04406-2|GAPDH ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS UPN47_class_I_Rep_3 4 498.2065124511719 2 498.206878 994.399203 -0.61596 -0.00030687 -0.097554 -4.8602E-05 -0.71351 -0.00035548 498.2067904919757 15.934 0.43211 19.296 19.118 19.55 3.3619 77 51 2 0 0 0 0.47493 1 924 924 3.2813 1.6287 1 63234 29164 1977 18470 18481 33729 33729 -0.09822051143601129 NSDVSLLNY 9 Unmodified _NSDVSLLNY_ 0 0 0 nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 MULTI-MSMS UPN47_class_I_Rep_1 2 512.7508544921875 2 512.750921 1023.48729 0.26845 0.00013765 -0.062139 -3.1862E-05 0.20631 0.00010579 512.7508656435018 61.223 0.6565 64.605 64.305 64.961 3.3815 110 49 3 0 0 0 0.006303 4 14352 14269;14310;14352;14395 103.42 36.076 1 255840 29165 3996 18471 18482 33730;33731;33732;33733 33732 -0.023514305530056845 NSDVSLLNY 9 Unmodified _NSDVSLLNY_ 0 0 0 nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 MULTI-MSMS UPN47_class_I_Rep_2 3 512.7509155273438 2 512.750921 1023.48729 0.13289 6.8139E-05 0.061909 3.1744E-05 0.1948 9.9883E-05 512.7508544192907 61.447 0.68418 64.706 64.369 65.054 3.2594 88 42 3 0 0 0 0.0053074 5 14489 14358;14401;14447;14489;14538 79.596 25.764 1 293810 29166 3996 18471 18482 33734;33735;33736;33737;33738 33737 -0.023514305530056845 NSDVSLLNY 9 Unmodified _NSDVSLLNY_ 0 0 0 nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-3|HIPK1 MULTI-MSMS UPN47_class_I_Rep_3 4 512.7509155273438 2 512.750921 1023.48729 0.21712 0.00011133 -0.096825 -4.9647E-05 0.12029 6.1681E-05 512.7508211167466 61.454 0.631 64.621 64.366 64.997 3.1667 103 45 3 0 0 0 0.006303 5 14521 14440;14482;14521;14561;14603 89.401 25.957 1 255800 29167 3996 18471 18482 33739;33740;33741;33742;33743 33741 -0.023514305530056845 NSEEEEDDDD 10 Unmodified _NSEEEEDDDD_ 0 0 0 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17 ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MSMS UPN47_class_I_Rep_3 4 598.6879272460938 2 598.689109 1195.36367 NaN NaN NaN NaN NaN NaN NaN 116.18 1 119.65 119.15 120.15 3.462 0 0 0 0.53105 1 28585 28585 1.3295 0.13619 1 29168 2756 18472 18483 33744 33744 -0.226202229726141 NSEFNPEHIL 10 Unmodified _NSEFNPEHIL_ 0 0 0 REV__MER57A-int_dup322|chr3:136686610-136687217:-|1.5552755734236998|0.0067869715246023|7.84|151.0|23|1|anti-sense REV__MER57A-int_dup322|chr3:136686610-136687217:-|1.5552755734236998|0.0067869715246023|7.84|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 600.2892456054688 2 600.288202 1198.56185 NaN NaN NaN NaN NaN NaN NaN 75.79 1 79.374 78.874 79.874 3.5831 0 0 0 0.53105 1 17825 17825 1.1933 0.50296 1 + 29169 31446 18473 18484 33745 33745 -0.029486677416116436 NSFDGWLW 8 Unmodified _NSFDGWLW_ 0 0 0 REV__ENST00000341421.7_1_3:42201705-42201891:+|nuORF REV__ENST00000341421.7_1_3:42201705-42201891:+|nuORF MSMS UPN47_class_I_Rep_1 2 512.7300415039062 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 112.09 1 115.66 115.16 116.16 3.572 0 0 0 0.40738 1 27658 27658 0.79363 0 1 + 29170 21826 18474 18485 33746 33746 -0.06575361170712313 NSFDGWLW 8 Unmodified _NSFDGWLW_ 0 0 0 REV__ENST00000341421.7_1_3:42201705-42201891:+|nuORF REV__ENST00000341421.7_1_3:42201705-42201891:+|nuORF MSMS UPN47_class_I_Rep_2 3 512.7286987304688 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 24.252 1 27.717 27.217 28.217 3.4655 0 0 0 0.40738 1 3186 3186 0.79363 0 1 + 29171 21826 18474 18485 33747 33747 -0.06575361170712313 NSGLNIYNLY 10 Unmodified _NSGLNIYNLY_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENST00000480961.1_1_20:44522693-44523773:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS UPN47_class_I_Rep_1 2 585.7920532226562 2 585.793121 1169.57169 0.29889 0.00017509 0.52899 0.00030988 0.82788 0.00048497 585.7926417709104 52.598 1.1019 56.157 55.752 56.854 3.5585 147 79 4 0 0 0 0.48573 1 11883 11883 13.042 1.4022 1 1547200 29172 991 18475 18486 33748 33748 -0.00631479736239271 NSHLIVHKRIH 11 Unmodified _NSHLIVHKRIH_ 0 0 0 ENSG00000166704|ENST00000551380|ZNF606 ENSG00000166704|ENST00000551380|ZNF606 ENSG00000166704|ENST00000551380|ZNF606 MSMS UPN46_class_I_Rep_3 1 451.9329528808594 3 451.933588 1352.77894 NaN NaN NaN NaN NaN NaN NaN 93.122 1 93.122 92.622 93.622 0 0 0 0 0.38417 1 22559 22559 0.40827 0.24894 1 29173 4258 18476 18487 33749 33749 0.11665772322453449 NSHQSSTENEL 11 Unmodified _NSHQSSTENEL_ 0 0 0 nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1;ENST00000443537.2_1_2:136396190-136406815:+|nuORF;ENSG00000048991.16,R3HDM1,chr2,+,I28.1,135710232,135715549|23|7.99|5|intron;ENSG00000048991.16,R3HDM1,chr2,+,I28.1,135710232,135715549|23|7.99|2|intron nc|ENSG00000048991|Q15032-2|R3HDM1 nc|ENSG00000048991|Q15032-2|R3HDM1 MSMS UPN48_class_I_Rep_2 6 623.2732543945312 2 623.270738 1244.52692 NaN NaN NaN NaN NaN NaN NaN 27.437 1 31.068 30.568 31.568 3.6311 0 0 0 0.38417 1 3634 3634 0.96228 0.36078 1 29174 900 18477 18488 33750 33750 -0.08555955340239052 NSIAEILQETV 11 Unmodified _NSIAEILQETV_ 0 0 0 REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 405.88409423828125 3 406.218837 1215.63468 0.12868 5.2272E-05 -0.65306 -0.00026529 -0.52438 -0.00021301 406.21853599431347 64.972 0.56908 68.479 68.198 68.767 3.5077 47 39 2 0 0 0 22.551 1 14705 14705 1.4551 0.38366 1 162460 + 29175 17807 18478 18489 33751 33751 0.035490412611579814 NSIELKIGSHD 11 Unmodified _NSIELKIGSHD_ 0 0 0 REV__L1MC_dup351|chr1:176038887-176039541:+|1.0259167765159622|0.0087888332843904|6.87|151.0|4|1|sense REV__L1MC_dup351|chr1:176038887-176039541:+|1.0259167765159622|0.0087888332843904|6.87|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 404.5890197753906 3 404.878815 1211.61462 0.03342 1.3531E-05 2.6299 0.0010648 2.6633 0.0010783 405.21354256870256 39.665 0.14561 43.395 43.26 43.405 3.7297 23 14 2 0 0 0 22.551 1 7050 7050 2.4348 0 1 61628 + 29176 25083 18479 18490 33752 33752 0.017272903211733137 NSIFDSFPTY 10 Unmodified _NSIFDSFPTY_ 0 0 0 nc|ENSG00000020633|Q13761-2|RUNX3 nc|ENSG00000020633|Q13761-2|RUNX3 nc|ENSG00000020633|Q13761-2|RUNX3 MULTI-MSMS UPN48_class_I_Rep_2 6 595.7728881835938 2 595.771854 1189.52915 0.44483 0.00026502 0.364 0.00021686 0.80883 0.00048188 596.2737708478708 38.284 0.40916 42 41.729 42.138 3.7164 62 38 2 0 0 0 0.55448 1 6681 6681 4.897 0.36815 1 90782 29177 16620 18480 18491 33753 33753 -0.05802874864457408 NSIIFYNYV 9 Unmodified _NSIIFYNYV_ 0 0 0 REV__HAL1_dup20353|chr17:36523213-36524000:+|1.4563226978086712|0.0979703949562531|3.89|151.0|47|3|anti-sense REV__HAL1_dup20353|chr17:36523213-36524000:+|1.4563226978086712|0.0979703949562531|3.89|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.7872314453125 2 566.787307 1131.56006 NaN NaN NaN NaN NaN NaN NaN 52.752 1 55.947 55.447 56.447 3.1948 0 0 0 0.37476 1 11844 11844 6.7232 0.99131 1 + 29178 23392 18481 18492 33754 33754 -0.0004567675957787287 NSIMVLLI 8 Unmodified _NSIMVLLI_ 0 0 0 ENSG00000177186|ENST00000317965|OR2M7 ENSG00000177186|ENST00000317965|OR2M7 ENSG00000177186|ENST00000317965|OR2M7 MSMS UPN47_class_I_Rep_3 4 451.77197265625 2 451.772614 901.530675 NaN NaN NaN NaN NaN NaN NaN 12.596 1 15.971 15.471 16.471 3.3753 0 0 0 0.40738 1 112 112 0.79363 0 1 29179 4783 18482 18493 33755 33755 0.07597087690612625 NSIYINKKVIY 11 Unmodified _NSIYINKKVIY_ 0 0 0 L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|5|1|sense L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|5|1|sense L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.262451171875 3 452.262489 1353.76564 0.1426 6.4494E-05 0.86163 0.00038968 1.0042 0.00045418 452.26290359440117 59.544 0.32665 63.061 62.995 63.322 3.5169 43 26 2 0 0 0 0.68081 1 13031 13031 0.45452 0.046251 1 210150 29180 14559 18483 18494 33756 33756 0.10290476699856299 NSLFLTDLY 9 Unmodified _NSLFLTDLY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;nc|ENSG00000108387|O43236-5|SEPTIN4 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS UPN47_class_I_Rep_1 2 543.2783203125 2 543.279315 1084.54408 0.47494 0.00025802 -0.29427 -0.00015987 0.18067 9.8155E-05 543.2791709484957 83.515 0.26938 87.053 86.908 87.177 3.5386 43 30 2 0 0 0 0.12096 4 20874 20874;20879;20910;20914 29.841 7.1043 1 104450 29181 2391;4366;1862 18484 18495 33757;33758;33759;33760 33757 0.005186170035358373 NSLFLTDLY 9 Unmodified _NSLFLTDLY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;nc|ENSG00000108387|O43236-5|SEPTIN4 nc|ENSG00000122545|Q16181-2|SEPTIN7 MSMS UPN47_class_I_Rep_1 2 543.2791748046875 2 543.279315 1084.54408 NaN NaN NaN NaN NaN NaN NaN 83.341 1 86.88 86.38 87.38 3.5386 0 0 0 0.27207 1 20842 20842 12.241 4.3305 1 29182 2391;4366;1862 18484 18495 33761 33761 0.005186170035358373 NSLFLTDLY 9 Unmodified _NSLFLTDLY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;nc|ENSG00000108387|O43236-5|SEPTIN4 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS UPN47_class_I_Rep_3 4 543.279296875 2 543.279315 1084.54408 0.46341 0.00025176 -0.34606 -0.00018801 0.11736 6.3757E-05 543.2791430025286 83.69 0.6479 87.04 86.773 87.421 3.35 137 76 2 0 0 0 0.0053074 1 20996 20996 79.596 27.328 1 221880 29183 2391;4366;1862 18484 18495 33762 33762 0.005186170035358373 NSLHMRQGD 9 Unmodified _NSLHMRQGD_ 0 0 0 REV__ENST00000343702.8_1_12:96052970-96059626:-|nuORF REV__ENST00000343702.8_1_12:96052970-96059626:-|nuORF MSMS UPN47_class_I_Rep_3 4 529.2437744140625 2 529.245815 1056.47708 NaN NaN NaN NaN NaN NaN NaN 23.196 1 26.546 26.046 27.046 3.3503 0 0 0 0.39036 1 2907 2907 2.9952 0.10602 1 + 29184 21836 18485 18496 33763 33763 -0.04890316759201596 NSLIENYVV 9 Unmodified _NSLIENYVV_ 0 0 0 REV__L1MB1_dup4625|chr12:118334167-118334593:+|1.552565852808412|0.0028588617565293|9.08|151.0|15|3|sense REV__L1MB1_dup4625|chr12:118334167-118334593:+|1.552565852808412|0.0028588617565293|9.08|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 525.7772216796875 2 525.776939 1049.53933 NaN NaN NaN NaN NaN NaN NaN 78.54 1 81.986 81.486 82.486 3.4456 0 0 0 0.38916 1 19530 19530 3.2813 0 1 + 29185 25671 18486 18497 33764 33764 0.016537328607682866 NSLKMFCR 8 Unmodified _NSLKMFCR_ 0 0 0 Tigger2b_Pri_dup891|chr6:107942593-107943572:-|1.891853678062264|0.0202301347567152|6.55|150.0|13|2|sense Tigger2b_Pri_dup891|chr6:107942593-107943572:-|1.891853678062264|0.0202301347567152|6.55|150.0|13|2|sense Tigger2b_Pri_dup891|chr6:107942593-107943572:-|1.891853678062264|0.0202301347567152|6.55|150.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.7514953613281 2 499.749147 997.483742 0.15496 7.7441E-05 1.3162 0.00065779 1.4712 0.00073524 499.7510201149289 56.296 0.54127 59.754 59.476 60.017 3.4572 42 27 2 0 0 0 0.82752 1 12924 12924 4.756 2.4533 1 98842 29186 33348 18487 18498 33765 33765 -0.015100951321983302 NSLLIEHI 8 Unmodified _NSLLIEHI_ 0 0 0 REV__L1MD2_dup9700|chr18:32063251-32063970:+|1.760874706431112|0.0385053508968501|5.52|151.0|24|3|sense REV__L1MD2_dup9700|chr18:32063251-32063970:+|1.760874706431112|0.0385053508968501|5.52|151.0|24|3|sense MSMS UPN48_class_I_Rep_3 7 469.7710266113281 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 55.602 1 59.157 58.657 59.657 3.5554 0 0 0 0.40643 1 11803 11803 2.0598 0 1 + 29187 27461 18488 18499 33766 33766 0.052020714145328384 NSLLNKWCW 9 Unmodified _NSLLNKWCW_ 0 0 0 L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|45|2|sense;L1PA4_dup3875|chr5:66005542-66007559:+|1.1160191640184918|0.0488715801336203|4.51|151.0|32|2|sense;L1PA7_dup4895|chr5:177661089-177664032:+|2.420336929456497|0.1200775470443225|4.33|151.0|46|2|sense;L1PA7_dup4887|chr5:176246616-176249558:-|1.6170296608019077|0.110971524901053|3.87|151.0|11|1|sense L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|45|2|sense L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|45|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.288330078125 2 582.286951 1162.55935 0.40586 0.00023633 1.1611 0.00067609 1.567 0.00091241 582.2875035772163 59.704 0.39894 63.102 62.773 63.172 3.3982 29 24 2 0 0 0 0.43153 1 13860 13860 6.2058 0 1 77289 29188 14350 18489 18500 33767 33767 -0.015427946802901715 NSNHYHQWF 9 Unmodified _NSNHYHQWF_ 0 0 0 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MSMS UPN48_class_I_Rep_3 7 616.7652587890625 2 616.765229 1231.5159 NaN NaN NaN NaN NaN NaN NaN 19.171 1 22.759 22.259 23.259 3.5874 0 0 0 0.39518 1 1399 1399 1.8442 0 1 29189 2884 18490 18501 33768 33768 -0.09059268133205478 NSPDMWLLFEW 11 Unmodified _NSPDMWLLFEW_ 0 0 0 REV__ENSG00000177084|ENST00000320574|POLE REV__ENSG00000177084|ENST00000320574|POLE MSMS UPN47_class_I_Rep_2 3 479.8887023925781 3 479.888434 1436.64347 NaN NaN NaN NaN NaN NaN NaN 37.028 1 40.427 39.927 40.927 3.3988 0 0 0 0.38417 1 7013 7013 1.2148 0.10508 1 + 29190 20610 18491 18502 33769 33769 -0.057383083740432994 NSPVHLTRQ 9 Unmodified _NSPVHLTRQ_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS UPN47_class_I_Rep_1 2 526.28369140625 2 526.285797 1050.55704 NaN NaN NaN NaN NaN NaN NaN 33.495 1 37.193 36.693 37.693 3.6983 0 0 0 0.3967 1 5906 5906 1.4819 0.68827 1 + 29191 20568 18492 18503 33770 33770 0.03378492906267638 NSPYPQLLR 9 Unmodified _NSPYPQLLR_ 0 0 0 ENST00000265350.8_2_6:41874346-41874502:-|nuORF ENST00000265350.8_2_6:41874346-41874502:-|nuORF ENST00000265350.8_2_6:41874346-41874502:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 544.3001708984375 2 544.298373 1086.58219 0.40051 0.000218 -1.8321 -0.00099718 -1.4315 -0.00077919 544.2998207782558 36.809 0.11209 40.472 40.429 40.541 3.663 14 11 2 0 0 0 0.46869 1 6138 6138 3.9444 0.3479 1 70081 29192 5996 18493 18504 33771 33771 0.042365477088424086 NSQMPPVW 8 Unmodified _NSQMPPVW_ 0 0 0 L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|78|3|sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|78|3|sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|78|3|sense MSMS UPN47_class_I_Rep_2 3 479.72637939453125 2 479.726195 957.437837 NaN NaN NaN NaN NaN NaN NaN 19.112 1 22.502 22.002 23.002 3.3898 0 0 0 0.40364 1 1740 1740 5.7604 0.52976 1 29193 9928 18494 18505 33772 33772 -0.042584170427858226 NSQQSHHN 8 Unmodified _NSQQSHHN_ 0 0 0 REV__L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|96|2|sense REV__L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|96|2|sense MSMS UPN46_class_I_Rep_3 1 476.2060241699219 2 476.205004 950.395455 NaN NaN NaN NaN NaN NaN NaN 100.79 1 100.79 100.29 101.29 0 0 0 0 0.40472 1 24577 24577 4.3292 0.73274 1 + 29194 30093 18495 18506 33773 33773 -0.08172676126810074 NSRNWRFRY 9 Unmodified _NSRNWRFRY_ 0 0 0 ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF ENST00000493688.5_1_20:56813265-56820980:-|nuORF ENST00000493688.5_1_20:56813265-56820980:-|nuORF MSMS UPN47_class_I_Rep_3 4 649.8277587890625 2 649.828695 1297.64284 NaN NaN NaN NaN NaN NaN NaN 52.244 1 55.449 54.949 55.949 3.2055 0 0 0 0.39518 1 11694 11694 1.8442 0.19162 1 29195 7082 18496 18507 33774 33774 0.0059207781180248276 NSRQWRYMR 9 Unmodified _NSRQWRYMR_ 0 0 0 REV__L1MD1_dup6365|chr20:1144115-1144829:+|1.5063197423271728|0.148757810287998|3.34|151.0|22|3|sense REV__L1MD1_dup6365|chr20:1144115-1144829:+|1.5063197423271728|0.148757810287998|3.34|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 432.8851623535156 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 88.713 1 88.713 88.213 89.213 0 0 0 0 0.40098 1 21317 21317 0.20686 0.066965 1 + 29196 27365 18497 18508 33775 33775 -0.00543281922909955 NSSDHVLLY 9 Unmodified _NSSDHVLLY_ 0 0 0 ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF ENST00000369244.6_1_6:99374760-99382655:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 524.2589111328125 2 524.258914 1046.50327 -0.02922 -1.5319E-05 0.043422 2.2764E-05 0.014202 7.4453E-06 524.76064347765 43.035 0.61359 46.722 46.424 47.038 3.6875 78 42 2 0 0 0 0.28552 1 8821 8821 14.838 0 1 96024 29197 5883 18498 18509 33776 33776 -0.018117243160759244 NSSENGNRAP 10 Unmodified _NSSENGNRAP_ 0 0 0 ENST00000486829.1_1_3:56916324-56992886:-|nuORF ENST00000486829.1_1_3:56916324-56992886:-|nuORF ENST00000486829.1_1_3:56916324-56992886:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 523.2362060546875 2 523.236501 1044.45845 -0.23159 -0.00012117 -0.19787 -0.00010353 -0.42946 -0.00022471 523.236327642716 34.134 0.74666 37.408 37.1 37.846 3.2748 110 51 3 0 0 0 0.56333 1 6222 6222 1.4819 0.68827 1 235940 29198 7041 18499 18510 33777 33777 -0.062001551294315504 NSSFILRYV 9 Unmodified _NSSFILRYV_ 0 0 0 L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.7825927734375 2 549.800749 1097.58694 0.24729 0.00013596 -0.052282 -2.8745E-05 0.19501 0.00010721 549.8007443718254 49.127 0.48774 52.787 52.513 53 3.6592 53 35 2 0 0 0 0.37599 2 10685 10651;10685 9.3831 1.473 1 83204 29199 14473 18500 18511 33778;33779 33779 0.04205431851596586 NSSFILRYV 9 Unmodified _NSSFILRYV_ 0 0 0 L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.7835693359375 2 549.800749 1097.58694 0.39575 0.00021758 -0.31445 -0.00017289 0.081298 4.4698E-05 549.8005277180221 49.438 0.52189 52.785 52.588 53.11 3.3465 47 33 2 0 0 0 0.30034 3 10812 10799;10812;10853 13.906 5.1606 1 96484 29200 14473 18500 18511 33780;33781;33782 33781 0.04205431851596586 NSSFILRYV 9 Unmodified _NSSFILRYV_ 0 0 0 L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense L1PA5_dup457|chr1:161829514-161831957:+|1.6076289521264553|0.1073215022466934|3.9|151.0|153|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.7828369140625 2 549.800749 1097.58694 0.45522 0.00025028 -0.041836 -2.3001E-05 0.41338 0.00022728 549.8006871351661 49.617 0.50509 52.844 52.579 53.084 3.2262 44 28 2 0 0 0 0.30034 1 10929 10929 13.906 13.906 1 92001 29201 14473 18500 18511 33783 33783 0.04205431851596586 NSSSQNSSEPY 11 Unmodified _NSSSQNSSEPY_ 0 0 0 nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ENSG00000157657|ENST00000374126|ZNF618 nc|ENSG00000157657|Q5T7W0-2|ZNF618 nc|ENSG00000157657|Q5T7W0-2|ZNF618 MSMS UPN48_class_I_Rep_2 6 600.2446899414062 2 600.244189 1198.47382 NaN NaN NaN NaN NaN NaN NaN 22.517 1 26.16 25.66 26.66 3.6432 0 0 0 0.38417 1 2314 2314 1.1933 0.59184 1 29202 3774 18501 18512 33784 33784 -0.11747333122866621 NSSSTSTMC 9 Unmodified _NSSSTSTMC_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;ENST00000481856.1_1_7:4213871-4218865:+|nuORF;ENST00000476701.5_1_7:4169443-4308379:+|nuORF ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MSMS UPN48_class_I_Rep_1 5 459.1722412109375 2 459.170592 916.326632 NaN NaN NaN NaN NaN NaN NaN 91.102 1 94.728 94.228 95.228 3.626 0 0 0 0.39598 1 21893 21893 1.6526 0.85899 1 29203 3440 18502 18513 33785 33785 -0.1348784453305143 NSSYHSPILP 10 Unmodified _NSSYHSPILP_ 0 0 0 HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|19|1|sense HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|19|1|sense HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|19|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.780029296875 2 557.780013 1113.54547 0.21357 0.00011912 -0.29027 -0.00016191 -0.076708 -4.2786E-05 557.7798510478449 45.078 1.1809 48.434 48.058 49.239 3.3556 178 71 4 0 0 0 0.51565 1 9467 9467 10.074 0 1 793490 29204 8154 18503 18514 33786 33786 -0.006757489077244827 NSTKRRKKYL 10 Unmodified _NSTKRRKKYL_ 0 0 0 REV__L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|5|1|sense REV__L1M1_dup4532|chr9:7021445-7024341:-|1.5622672048828798|0.058518417400726|4.74|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 647.87353515625 2 647.391128 1292.7677 NaN NaN NaN NaN NaN NaN NaN 75.577 1 75.577 75.077 76.077 0 0 0 0 0.53105 1 17580 17580 1.6526 0.17072 1 + 29205 24106 18504 18515 33787 33787 0.133029502283307 NSTTKRQPN 9 Unmodified _NSTTKRQPN_ 0 0 0 L1MB5_dup314|chr1:90958261-90959816:+|1.3052597141681677|0.0171384575976879|6.25|151.0|13|1|sense;L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|49|2|sense L1MB5_dup314|chr1:90958261-90959816:+|1.3052597141681677|0.0171384575976879|6.25|151.0|13|1|sense L1MB5_dup314|chr1:90958261-90959816:+|1.3052597141681677|0.0171384575976879|6.25|151.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 523.2894897460938 2 523.272887 1044.53122 NaN NaN NaN NaN NaN NaN NaN 66.963 1 70.324 69.824 70.824 3.3611 0 0 0 0.29868 1 16074 16074 10.824 0 1 29206 10608 18505 18516 33788 33788 0.010735986639929251 NSVFQAVYG 9 Unmodified _NSVFQAVYG_ 0 0 0 ENSG00000150403|ENST00000434316|TMCO3;nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 MSMS UPN48_class_I_Rep_1 5 492.7419738769531 2 492.742899 983.471246 NaN NaN NaN NaN NaN NaN NaN 62.692 1 66.155 65.655 66.655 3.4625 0 0 0 0.31276 1 14052 14052 10.074 1.9184 1 29207 3561 18506 18517 33789 33789 -0.02115091999235119 NSVYTNVL 8 Unmodified _NSVYTNVL_ 0 0 0 ENSG00000142102|ENST00000409548|PGGHG;ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF ENSG00000142102|ENST00000409548|PGGHG ENSG00000142102|ENST00000409548|PGGHG MULTI-MSMS UPN47_class_I_Rep_2 3 455.2372131347656 2 455.23745 908.460347 -0.50059 -0.00022789 0.18132 8.2543E-05 -0.31927 -0.00014535 455.2374362690604 35.437 0.67593 38.848 38.579 39.255 3.4114 91 41 3 0 0 0 0.82752 1 6474 6474 6.7232 0 1 231650 29208 3238 18507 18518 33790 33790 0.002455056264693667 NSVYTNVL 8 Unmodified _NSVYTNVL_ 0 0 0 ENSG00000142102|ENST00000409548|PGGHG;ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF ENSG00000142102|ENST00000409548|PGGHG ENSG00000142102|ENST00000409548|PGGHG MULTI-MSMS UPN47_class_I_Rep_3 4 455.2371520996094 2 455.23745 908.460347 -0.72965 -0.00033216 0.21873 9.9572E-05 -0.51092 -0.00023259 455.2374823091929 35.599 0.78651 38.854 38.521 39.308 3.2547 112 52 3 0 0 0 0.82752 2 6671 6671;6714 13.906 0 1 252380 29209 3238 18507 18518 33791;33792 33791 0.002455056264693667 NSWDCKVH 8 Unmodified _NSWDCKVH_ 0 0 0 AluJr_dup56624|chr12:93439205-93439506:+|1.2613502603174669|0.017064688678866|6.21|151.0|18|2|anti-sense AluJr_dup56624|chr12:93439205-93439506:+|1.2613502603174669|0.017064688678866|6.21|151.0|18|2|anti-sense AluJr_dup56624|chr12:93439205-93439506:+|1.2613502603174669|0.017064688678866|6.21|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_3 4 494.7186279296875 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 43.062 1 46.304 45.804 46.804 3.2419 0 0 0 0.40746 1 8898 8898 0.69038 0.088878 1 29210 161 18508 18519 33793 33793 -0.07096489190939792 NSWDWLPA 8 Unmodified _NSWDWLPA_ 0 0 0 nc|ENSG00000138835|P49796-7|RGS3;nc|ENSG00000138835|P49796-8|RGS3 nc|ENSG00000138835|P49796-7|RGS3 nc|ENSG00000138835|P49796-7|RGS3 MSMS UPN47_class_I_Rep_1 2 494.71771240234375 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 116.93 1 120.54 120.04 121.04 3.6036 0 0 0 0.40738 1 28972 28972 0.79363 0 1 29211 16695 18509 18520 33794 33794 -0.04919361170721004 NSYGASLFY 9 Unmodified _NSYGASLFY_ 0 0 0 ENST00000334801.7_1_11:118768619-118768991:-|nuORF ENST00000334801.7_1_11:118768619-118768991:-|nuORF ENST00000334801.7_1_11:118768619-118768991:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 511.23492431640625 2 511.234907 1020.45526 0.34913 0.00017849 0.3729 0.00019064 0.72203 0.00036913 511.23492697882307 58.053 0.42462 61.54 61.486 61.911 3.487 26 23 2 0 0 0 0.24936 1 12677 12677 17.113 0 1 63861 29212 6199 18510 18521 33795 33795 -0.05414798236142815 NSYGASLFY 9 Unmodified _NSYGASLFY_ 0 0 0 ENST00000334801.7_1_11:118768619-118768991:-|nuORF ENST00000334801.7_1_11:118768619-118768991:-|nuORF ENST00000334801.7_1_11:118768619-118768991:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 511.234907 1020.45526 0.34913 0.00017849 0.3729 0.00019064 0.72203 0.00036913 511.23492697882307 58.053 0.42462 61.54 61.486 61.911 3.487 0 0 NaN 17.113 26 23 2 NaN NaN NaN NaN 0 NaN NaN 0 63861 29213 6199 18510 18521 -0.05414798236142815 NSYGIKKEL 9 Unmodified _NSYGIKKEL_ 0 0 0 L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|157|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|157|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|157|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 526.294921875 2 526.292756 1050.57096 0.35551 0.0001871 4.2423 0.0022327 4.5978 0.0024198 526.294840074716 35.471 0.026802 39.143 39.124 39.151 3.6721 4 2 2 0 0 0 0.49187 1 5757 5757 1.4819 0 1 51765 29214 13576 18511 18522 33796 33796 0.04769725614710296 NSYSYPKQK 9 Unmodified _NSYSYPKQK_ 0 0 0 L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.7786254882812 2 557.780013 1113.54547 0.045603 2.5437E-05 -0.3044 -0.00016979 -0.2588 -0.00014435 557.7797425077306 36.668 0.71099 40.067 39.781 40.492 3.3988 70 52 2 0 0 0 0.46869 1 6892 6892 3.9444 0 1 95291 29215 9644 18512 18523 33797 33797 -0.006757489077244827 NSYSYPKQK 9 Unmodified _NSYSYPKQK_ 0 0 0 L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2815551757812 2 557.780013 1113.54547 -0.083839 -4.6764E-05 -0.27284 -0.00015218 -0.35667 -0.00019895 557.7798686845542 36.891 0.60987 40.138 39.747 40.357 3.247 56 43 2 0 0 0 0.46869 2 7002 7002;7041 3.9444 0 1 76956 29216 9644 18512 18523 33798;33799 33798 -0.006757489077244827 NSYSYPKQK 9 Unmodified _NSYSYPKQK_ 0 0 0 L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.7799072265625 2 557.780013 1113.54547 0.23389 0.00013046 -0.23372 -0.00013036 0.00017202 9.595E-08 557.7798765294282 45.196 1.5715 48.44 48.057 49.629 3.2441 216 98 3 0 0 0 0.41259 1 9633 9633 7.2892 7.2892 1 898000 29217 9644 18512 18523 33800 33800 -0.006757489077244827 NSYSYPKQK 9 Unmodified _NSYSYPKQK_ 0 0 0 L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 557.780013 1113.54547 0.10596 5.91E-05 -0.24429 -0.00013626 -0.13834 -7.7162E-05 557.7798764698057 44.746 1.1239 48.446 48.068 49.192 3.6999 0.0062473 1.2363E-05 NaN 7.2892 199 73 4 NaN NaN NaN NaN 0 NaN NaN 0 647540 29218 9644 18512 18523 -0.006757489077244827 NSYSYPKQK 9 Unmodified _NSYSYPKQK_ 0 0 0 L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|49|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 557.780013 1113.54547 0.21357 0.00011912 -0.29027 -0.00016191 -0.076708 -4.2786E-05 557.7798510478449 45.078 1.1809 48.434 48.058 49.239 3.3556 -0.0063524 -3.8929E-05 NaN 7.2892 178 71 4 NaN NaN NaN NaN 0 NaN NaN 0 793490 29219 9644 18512 18523 -0.006757489077244827 NTADQAYY 8 Unmodified _NTADQAYY_ 0 0 0 L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|37|3|sense L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|37|3|sense L1M2_dup6174|chr10:31464424-31465606:+|1.203019036422855|0.0249359067227562|5.59|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 473.1990051269531 2 473.201064 944.387576 NaN NaN NaN NaN NaN NaN NaN 75.024 1 78.418 77.918 78.918 3.3937 0 0 0 0.40581 1 18495 18495 2.8892 0 1 29220 8701 18513 18524 33801 33801 -0.08684248166957786 NTAFIAFYL 9 Unmodified _NTAFIAFYL_ 0 0 0 REV__L1ME3Cz_dup5844|chr8:30074426-30074895:+|1.396148650332946|0.0273651740308527|5.67|151.0|21|1|anti-sense REV__L1ME3Cz_dup5844|chr8:30074426-30074895:+|1.396148650332946|0.0273651740308527|5.67|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_2 3 530.2794799804688 2 530.279118 1058.54368 NaN NaN NaN NaN NaN NaN NaN 67.004 1 70.268 69.768 70.768 3.2636 0 0 0 0.37476 1 16134 16134 6.7232 0.36906 1 + 29221 28127 18514 18525 33802 33802 0.016752420743159746 NTCLKQKF 8 Unmodified _NTCLKQKF_ 0 0 0 REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|17|1|sense REV__L1MB7_dup18212|chr15:61870045-61871678:-|1.203019036422855|0.1311180563229277|3.2|151.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 491.1610107421875 2 491.262945 980.511337 NaN NaN NaN NaN NaN NaN NaN 61.381 1 61.381 60.881 61.881 0 0 0 0 0.40404 1 13656 13656 5.2307 0 1 + 29222 26177 18515 18526 33803 33803 0.020301313996810677 NTDAIRIY 8 Unmodified _NTDAIRIY_ 0 0 0 REV__nc|ENSG00000011465|P07585-2|DCN REV__nc|ENSG00000011465|P07585-2|DCN MULTI-MSMS UPN47_class_I_Rep_3 4 483.23828125 2 483.256174 964.497795 -0.45166 -0.00021827 -0.84184 -0.00040683 -1.2935 -0.00062509 483.2555406944637 33.921 0.57241 37.195 36.932 37.504 3.2748 67 39 2 0 0 0 0.82752 1 6105 6105 23.148 1.4018 1 85963 + 29223 17581 18516 18527 33804 33804 0.014125968920893683 NTDEQPDEEV 10 Unmodified _NTDEQPDEEV_ 0 0 0 MER21C_dup2719|chr8:94977876-94978433:+|1.2203900739573337|0.0575137907232801|4.41|151.0|25|2|anti-sense MER21C_dup2719|chr8:94977876-94978433:+|1.2203900739573337|0.0575137907232801|4.41|151.0|25|2|anti-sense MER21C_dup2719|chr8:94977876-94978433:+|1.2203900739573337|0.0575137907232801|4.41|151.0|25|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 588.23876953125 2 588.238572 1174.46259 0.24764 0.00014567 -0.12298 -7.2342E-05 0.12466 7.333E-05 588.2385766032718 45.917 0.64508 49.271 48.908 49.553 3.3534 82 40 3 0 0 0 0.55448 1 9653 9653 4.897 0.56777 1 184600 29224 15890 18517 18528 33805 33805 -0.11766155217037522 NTDFGDEFY 9 Unmodified _NTDFGDEFY_ 0 0 0 nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 nc|ENSG00000116044|Q16236-3|NFE2L2 MSMS UPN47_class_I_Rep_2 3 554.2174072265625 2 554.216911 1106.41927 NaN NaN NaN NaN NaN NaN NaN 62.323 1 65.583 65.083 66.083 3.2594 0 0 0 0.078496 1 14709 14709 29.082 5.9332 1 29225 2158 18518 18529 33806 33806 -0.12968300203647232 NTDFKNNI 8 Unmodified _NTDFKNNI_ 0 0 0 L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|18|1|sense L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|18|1|sense L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 483.2373352050781 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 36.273 1 39.684 39.184 40.184 3.4114 0 0 0 0.40643 1 6786 6786 2.0598 0 1 29226 13394 18519 18530 33807 33807 -0.022242800046228695 NTDFYQTSY 9 Unmodified _NTDFYQTSY_ 0 0 0 ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5 ENST00000522203.5_1_5:143545115-143549519:-|nuORF ENST00000522203.5_1_5:143545115-143549519:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.740966796875 2 569.738011 1137.46147 0.42431 0.00024175 1.9525 0.0011124 2.3768 0.0013542 569.7392814805862 49.762 0.68707 53.105 52.834 53.521 3.3431 80 40 3 0 0 0 0.13455 1 10819 10819 27.223 14.692 1 142790 29227 3412 18520 18531 33808 33808 -0.10176324795270375 NTDFYQTSY 9 Unmodified _NTDFYQTSY_ 0 0 0 ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5 ENST00000522203.5_1_5:143545115-143549519:-|nuORF ENST00000522203.5_1_5:143545115-143549519:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 569.73828125 2 569.738011 1137.46147 0.4736 0.00026983 1.6902 0.00096296 2.1638 0.0012328 569.7389695409013 49.784 0.88498 53.01 52.71 53.595 3.2262 94 48 3 0 0 0 0.11648 2 10938 10898;10938 30.703 13.591 1 165180 29228 3412 18520 18531 33809;33810 33810 -0.10176324795270375 NTDHQTQLLY 10 Unmodified _NTDHQTQLLY_ 0 0 0 nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 MULTI-MSMS UPN47_class_I_Rep_1 2 616.7984008789062 2 616.798934 1231.58332 0.0084866 5.2345E-06 -0.08347 -5.1484E-05 -0.074984 -4.625E-05 616.7988667074247 38.517 0.67849 42.183 41.905 42.584 3.6652 103 45 3 0 0 0 0.4965 2 7398 7398;7476 12.241 12.241 1 254890 29229 918 18521 18532 33811;33812 33811 -0.02321282712887296 NTDHQTQLLY 10 Unmodified _NTDHQTQLLY_ 0 0 0 nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 MULTI-MSMS UPN47_class_I_Rep_2 3 616.7987670898438 2 616.798934 1231.58332 0.045085 2.7808E-05 -0.023388 -1.4425E-05 0.021697 1.3383E-05 616.7989310519092 38.776 0.71209 42.155 41.894 42.606 3.3785 101 46 3 0 0 0 0.43106 2 7569 7528;7569 17.113 17.113 1 237640 29230 918 18521 18532 33813;33814 33814 -0.02321282712887296 NTDHQTQLLY 10 Unmodified _NTDHQTQLLY_ 0 0 0 nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 nc|ENSG00000051180|Q06609-2|RAD51 MULTI-MSMS UPN47_class_I_Rep_3 4 616.799072265625 2 616.798934 1231.58332 -0.043849 -2.7046E-05 -0.073247 -4.5179E-05 -0.1171 -7.2225E-05 616.7987926391742 38.994 0.83587 42.232 41.855 42.69 3.238 125 59 3 0 0 0 0.4965 1 7648 7648 12.241 12.241 1 166750 29231 918 18521 18532 33815 33815 -0.02321282712887296 NTDLGNDLY 9 Unmodified _NTDLGNDLY_ 0 0 0 ENSG00000166477.13,LEO1,chr15,-,I9.1,51949995,51951843|23|7.67|3|intron;nc|ENSG00000166477|Q8WVC0-2|LEO1;ENSG00000166477|ENST00000299601|LEO1 ENSG00000166477.13,LEO1,chr15,-,I9.1,51949995,51951843|23|7.67|3|intron ENSG00000166477.13,LEO1,chr15,-,I9.1,51949995,51951843|23|7.67|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 512.732666015625 2 512.732729 1023.4509 0.14166 7.2634E-05 0.39444 0.00020224 0.53611 0.00027488 513.2348612235072 50.726 0.37607 54.065 53.94 54.316 3.3386 30 20 2 0 0 0 0.31407 1 11182 11182 13.042 0.51092 1 66830 29232 4244 18522 18533 33816 33816 -0.059883074497065536 NTDLMTSQCY 10 Unmodified _NTDLMTSQCY_ 0 0 0 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MSMS UPN47_class_I_Rep_2 3 588.2390747070312 2 588.239006 1174.46346 0.24764 0.00014567 -0.86111 -0.00050654 -0.61347 -0.00036087 588.2385766032718 45.917 0.64508 49.271 48.908 49.553 3.3534 82 40 3 0 0 0 0.41414 1 9694 9694 18.373 1.2602 1 184600 + 29233 21068 18523 18534 33817 33817 -0.11679355373325961 NTDLMTSQCY 10 Unmodified _NTDLMTSQCY_ 0 0 0 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 588.2389526367188 2 588.239006 1174.46346 0.27435 0.00016138 -1.0435 -0.00061386 -0.7692 -0.00045247 588.2384885793459 46.009 0.66592 49.253 48.963 49.629 3.2441 76 38 3 0 0 0 0.51963 1 9742 9742 9.544 0.19654 1 171710 + 29234 21068 18523 18534 33818 33818 -0.11679355373325961 NTDLVFGQY 9 Unmodified _NTDLVFGQY_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MULTI-MSMS UPN47_class_I_Rep_1 2 528.7540893554688 2 528.753464 1055.49238 0.31744 0.00016785 -0.32673 -0.00017276 -0.0092868 -4.9104E-06 528.7533625321408 64.737 0.41325 68.093 67.921 68.334 3.3557 51 33 2 0 0 0 0.2924 6 15372 15372;15378;15417;15439;15464;15467 14.405 2.8575 1 85540 29235 5730 18524 18535 33819;33820;33821;33822;33823;33824 33819 -0.03315126690381476 NTDLVFGQY 9 Unmodified _NTDLVFGQY_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MSMS UPN47_class_I_Rep_2 3 528.7536010742188 2 528.753464 1055.49238 NaN NaN NaN NaN NaN NaN NaN 64.963 1 68.219 67.719 68.719 3.2556 0 0 0 0.050874 1 15511 15511 36.506 14.916 1 29236 5730 18524 18535 33825 33825 -0.03315126690381476 NTDLVFGQY 9 Unmodified _NTDLVFGQY_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MSMS UPN47_class_I_Rep_2 3 528.753173828125 2 528.753464 1055.49238 NaN NaN NaN NaN NaN NaN NaN 65.028 1 68.284 67.784 68.784 3.2556 0 0 0 0.15288 1 15530 15530 19.362 5.7471 1 29237 5730 18524 18535 33826 33826 -0.03315126690381476 NTDLVFGQY 9 Unmodified _NTDLVFGQY_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MSMS UPN47_class_I_Rep_2 3 528.752197265625 2 528.753464 1055.49238 NaN NaN NaN NaN NaN NaN NaN 65.109 1 68.365 67.865 68.865 3.2556 0 0 0 0.15288 1 15556 15556 19.362 5.7471 1 29238 5730 18524 18535 33827 33827 -0.03315126690381476 NTDLVFGQY 9 Unmodified _NTDLVFGQY_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MSMS UPN47_class_I_Rep_2 3 528.7537231445312 2 528.753464 1055.49238 NaN NaN NaN NaN NaN NaN NaN 65.13 1 68.385 67.885 68.885 3.2556 0 0 0 0.20399 1 15562 15562 16.149 6.6051 1 29239 5730 18524 18535 33828 33828 -0.03315126690381476 NTDLVFGQY 9 Unmodified _NTDLVFGQY_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MULTI-MSMS UPN47_class_I_Rep_3 4 528.7532348632812 2 528.753464 1055.49238 0.36195 0.00019138 -0.27068 -0.00014312 0.091269 4.8259E-05 528.7532240700232 64.964 0.43349 68.144 67.939 68.372 3.1795 55 33 2 0 0 0 0.15547 3 15594 15586;15594;15635 24.991 6.6179 1 81800 29240 5730 18524 18535 33829;33830;33831 33830 -0.03315126690381476 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ENSG00000164151|ENST00000296564|ICE1 ENST00000505464.1_1_5:5423001-5437265:+|nuORF ENST00000505464.1_1_5:5423001-5437265:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 541.7542114257812 2 541.753661 1081.49277 0.41218 0.0002233 0.33633 0.00018221 0.74851 0.00040551 541.7537931670943 57.828 0.47933 61.265 61.046 61.525 3.437 49 28 2 0 0 0 0.10568 2 13365 13272;13365 32.786 8.7651 1 140630 29241 4088 18525 18536 33832;33833 33833 -0.044717517611843505 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ENSG00000164151|ENST00000296564|ICE1 ENST00000505464.1_1_5:5423001-5437265:+|nuORF ENST00000505464.1_1_5:5423001-5437265:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 541.7540893554688 2 541.753661 1081.49277 0.47868 0.00025933 0.36168 0.00019594 0.84035 0.00045526 541.7538120866735 58.129 0.66306 61.42 61.075 61.738 3.2912 70 43 2 0 0 0 0.057664 3 13413 13355;13413;13459 45.7 9.5726 1 127360 29242 4088 18525 18536 33834;33835;33836 33835 -0.044717517611843505 NTDNLLTEY 9 Unmodified _NTDNLLTEY_ 0 0 0 ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ENSG00000164151|ENST00000296564|ICE1 ENST00000505464.1_1_5:5423001-5437265:+|nuORF ENST00000505464.1_1_5:5423001-5437265:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 541.7539672851562 2 541.753661 1081.49277 0.32569 0.00017644 0.53177 0.00028809 0.85746 0.00046453 541.7538217631594 58.184 0.61605 61.349 61.066 61.682 3.1658 63 37 2 0 0 0 0.037922 3 13550 13445;13489;13550 53.833 9.5726 1 128790 29243 4088 18525 18536 33837;33838;33839 33839 -0.044717517611843505 NTDPHSQEY 9 Unmodified _NTDPHSQEY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_1 2 545.7249755859375 2 545.725435 1089.43632 -0.070583 -3.8519E-05 -0.36991 -0.00020187 -0.44049 -0.00024039 545.7251182106082 15.722 0.41919 19.219 19.054 19.473 3.4968 107 49 3 0 0 0 0.24936 2 899 868;899 17.113 4.8722 1 100700 29244 5036 18526 18537 33840;33841 33841 -0.10482379597829095 NTDPHSQEY 9 Unmodified _NTDPHSQEY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_2 3 545.724853515625 2 545.725435 1089.43632 0.01975 1.0778E-05 -0.41096 -0.00022427 -0.39121 -0.00021349 545.7250493499412 15.902 0.55673 19.289 19.118 19.675 3.3864 125 67 3 0 0 0 0.39745 2 915 915;948 8.1555 0.54658 1 101510 29245 5036 18526 18537 33842;33843 33842 -0.10482379597829095 NTDPHSQEY 9 Unmodified _NTDPHSQEY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_3 4 545.72509765625 2 545.725435 1089.43632 -0.41301 -0.00022539 0.04344 2.3706E-05 -0.36957 -0.00020168 545.7252637324239 15.799 0.48542 19.165 18.965 19.45 3.3659 108 55 3 0 0 0 0.32682 2 854 854;885 12.241 0.83484 1 98628 29246 5036 18526 18537 33844;33845 33844 -0.10482379597829095 NTDQFKASS 9 Unmodified _NTDQFKASS_ 0 0 0 REV__L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|25|1|sense REV__L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.2329406738281 2 499.232896 996.451239 -0.17067 -8.5203E-05 0.30482 0.00015218 0.13415 6.6974E-05 499.2329403948486 32.914 0.92601 36.369 36.057 36.983 3.4547 160 73 3 0 0 0 0.45441 1 5890 5890 4.897 1.3005 1 368580 + 29247 29110 18527 18538 33846 33846 -0.047128877298519 NTDQIKVYY 9 Unmodified _NTDQIKVYY_ 0 0 0 REV__ENST00000554446.5_1_14:23416818-23424363:-|nuORF REV__ENST00000554446.5_1_14:23416818-23424363:-|nuORF MSMS UPN47_class_I_Rep_3 4 572.2877197265625 2 572.287671 1142.56079 NaN NaN NaN NaN NaN NaN NaN 59.662 1 62.828 62.328 63.328 3.1651 0 0 0 0.31276 1 13955 13955 10.074 0.6908 1 + 29248 18030 18528 18539 33847 33847 -0.004788821105421448 NTDRNIDKY 9 Unmodified _NTDRNIDKY_ 0 0 0 nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-3|TASOR MULTI-MSMS UPN47_class_I_Rep_1 2 569.7777099609375 2 569.778002 1137.54145 -0.12817 -7.303E-05 -0.31146 -0.00017746 -0.43963 -0.00025049 569.7777757148556 16.339 0.60258 19.861 19.697 20.3 3.5224 162 69 3 0 0 0 0.36258 1 1029 1029 10.151 4.8537 1 99365 29249 4062 18529 18540 33848 33848 -0.02181838401429559 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA ENST00000453374.2_1_1:160236508-160236577:-|nuORF ENST00000453374.2_1_1:160236508-160236577:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.2378845214844 2 483.237981 964.461409 -0.30372 -0.00014677 0.2052 9.9162E-05 -0.098521 -4.7609E-05 483.2382314540873 32.736 2.5396 36.449 35.98 38.52 3.7131 473 191 4 0 0 0 6.8789E-10 6 5598 5598;5634;5670;5709;5751;5789 193.29 16.457 1 7572400 29250 4347 18530 18541 33849;33850;33851;33852;33853;33854 33849 -0.022242800046228695 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA ENST00000453374.2_1_1:160236508-160236577:-|nuORF ENST00000453374.2_1_1:160236508-160236577:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 483.2379455566406 2 483.237981 964.461409 -0.1882 -9.0947E-05 0.095001 4.5908E-05 -0.093201 -4.5038E-05 483.2381676384087 32.941 2.4883 36.396 35.965 38.453 3.4547 451 179 4 0 0 0 6.8789E-10 7 5861 5707;5747;5784;5822;5861;5898;5936 179.17 16.321 1 7746000 29251 4347 18530 18541 33855;33856;33857;33858;33859;33860;33861 33859 -0.022242800046228695 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA ENST00000453374.2_1_1:160236508-160236577:-|nuORF ENST00000453374.2_1_1:160236508-160236577:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 483.2379455566406 2 483.237981 964.461409 -0.46144 -0.00022299 0.2932 0.00014169 -0.16824 -8.1301E-05 483.2382941966884 33.121 2.7014 36.408 35.96 38.661 3.2867 509 205 4 0 0 0 1.1433E-08 6 5952 5802;5844;5877;5916;5952;5988 191.38 30.864 1 6851300 29252 4347 18530 18541 33862;33863;33864;33865;33866;33867 33866 -0.022242800046228695 NTDVPIPTH 9 Unmodified _NTDVPIPTH_ 0 0 0 ENSG00000154269|ENST00000357639|ENPP3 ENSG00000154269|ENST00000357639|ENPP3 ENSG00000154269|ENST00000357639|ENPP3 MULTI-MSMS UPN47_class_I_Rep_2 3 497.25360107421875 2 497.253631 992.49271 0.0044883 2.2318E-06 -0.16111 -8.0113E-05 -0.15662 -7.7881E-05 497.2535152381283 44.908 0.8041 48.263 47.955 48.759 3.3555 72 49 2 0 0 0 0.37599 1 9456 9456 9.3831 0 1 119940 29253 3668 18531 18542 33868 33868 -0.003837069705241447 NTDVPIPTH 9 Unmodified _NTDVPIPTH_ 0 0 0 ENSG00000154269|ENST00000357639|ENPP3 ENSG00000154269|ENST00000357639|ENPP3 ENSG00000154269|ENST00000357639|ENPP3 MULTI-MSMS UPN47_class_I_Rep_3 4 497.2537536621094 2 497.253631 992.49271 0.0032664 1.6242E-06 0.10499 5.2206E-05 0.10826 5.383E-05 497.25364907231165 45.055 0.81224 48.299 47.969 48.781 3.2441 82 55 2 0 0 0 0.43982 1 9579 9579 5.7319 0 1 149040 29254 3668 18531 18542 33869 33869 -0.003837069705241447 NTEAVVGIVVY 11 Unmodified _NTEAVVGIVVY_ 0 0 0 nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D nc|ENSG00000145246|Q9P241-2|ATP10D nc|ENSG00000145246|Q9P241-2|ATP10D MSMS UPN47_class_I_Rep_2 3 582.3195190429688 2 582.318971 1162.62339 NaN NaN NaN NaN NaN NaN NaN 62.149 1 65.409 64.909 65.909 3.2594 0 0 0 0.20858 1 14657 14657 17.113 1.2657 1 29255 3390 18532 18543 33870 33870 0.048582639576807196 NTEDLNDLMN 10 Oxidation (M) _NTEDLNDLM(Oxidation (M))N_ NTEDLNDLM(1)N NTEDLNDLM(40)N 0 0 1 REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|14|1|sense REV__L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.7513427734375 2 597.750792 1193.48703 0.42661 0.000255 0.41532 0.00024826 0.84193 0.00050326 597.7509567766265 79.133 0.89064 82.579 82.2 83.091 3.4456 165 80 3 0 0 0 0.23322 1 19659 19659 40.239 13.971 1 446250 + 29256 25965 18533 18544 33871 33871 183 -0.10197218335179059 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS UPN47_class_I_Rep_1 2 541.7537231445312 2 541.753661 1081.49277 -0.033941 -1.8388E-05 0.33434 0.00018113 0.3004 0.00016274 541.7537624080588 30.322 1.1412 34.067 33.716 34.857 3.7449 227 89 4 0 0 0 0.0060665 6 4897 4897;4937;4980;5013;5056;5094 121.5 69.873 1 659670 29257 832 18534 18545 33872;33873;33874;33875;33876;33877 33872 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MSMS UPN47_class_I_Rep_1 2 541.7537841796875 2 541.753661 1081.49277 NaN NaN NaN NaN NaN NaN NaN 30.996 1 34.725 34.225 35.225 3.7293 0 0 0 0.20399 1 5141 5141 16.149 3.6176 1 29258 832 18534 18545 33878 33878 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS UPN47_class_I_Rep_2 3 541.753662109375 2 541.753661 1081.49277 0.0059562 3.2268E-06 0.24889 0.00013484 0.25485 0.00013806 541.7536770781187 30.45 1.0878 33.932 33.569 34.657 3.4821 220 85 3 0 0 0 0.0046371 6 5029 4951;4988;5029;5075;5120;5175 147.24 78.136 1 731510 29259 832 18534 18545 33879;33880;33881;33882;33883;33884 33881 -0.044717517611843505 NTEEEGLKY 9 Unmodified _NTEEEGLKY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 541.753661 1081.49277 -0.19237 -0.00010422 0.44421 0.00024065 0.25185 0.00013644 541.7538183448895 30.633 1.1768 33.945 33.601 34.778 3.3116 -0.036686 8.9961E-05 NaN 147.24 259 96 3 NaN NaN NaN NaN 0 NaN NaN 0 687580 29260 832 18534 18545 -0.044717517611843505 NTEEEPPP 8 Unmodified _NTEEEPPP_ 0 0 0 ENSG00000198879.12,SFMBT2,chr10,-,I21.1,7172662,7175989|84|5.56|4|intron ENSG00000198879.12,SFMBT2,chr10,-,I21.1,7172662,7175989|84|5.56|4|intron ENSG00000198879.12,SFMBT2,chr10,-,I21.1,7172662,7175989|84|5.56|4|intron MSMS UPN47_class_I_Rep_1 2 456.797607421875 2 456.700897 911.387241 NaN NaN NaN NaN NaN NaN NaN 23.015 1 26.719 26.219 27.219 3.7042 0 0 0 0.40738 1 2777 2777 0.79363 0 1 29261 5478 18535 18546 33885 33885 -0.07199667886800398 NTESYLDKM 9 Unmodified _NTESYLDKM_ 0 0 0 MER101-int_dup511|chr7:104179841-104181503:+|1.031705387388669|0.1586251874331488|2.7|151.0|124|3|anti-sense MER101-int_dup511|chr7:104179841-104181503:+|1.031705387388669|0.1586251874331488|2.7|151.0|124|3|anti-sense MER101-int_dup511|chr7:104179841-104181503:+|1.031705387388669|0.1586251874331488|2.7|151.0|124|3|anti-sense MSMS UPN48_class_I_Rep_3 7 550.7476806640625 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 47.332 1 50.968 50.468 51.468 3.6363 0 0 0 0.3967 1 9278 9278 1.4819 0.15237 1 29262 15751 18536 18547 33886 33886 -0.060188076332678975 NTFDFIKVLR 10 Unmodified _NTFDFIKVLR_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN48_class_I_Rep_3 7 626.856689453125 2 626.856055 1251.69756 NaN NaN NaN NaN NaN NaN NaN 64.539 1 68.047 67.547 68.547 3.5083 0 0 0 0.53105 1 14518 14518 2.7352 0.23671 1 29263 3340 18537 18548 33887 33887 0.08177651839832834 NTFLIWVCH 9 Unmodified _NTFLIWVCH_ 0 0 0 HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|84|2|sense HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|84|2|sense HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|84|2|sense MSMS UPN46_class_I_Rep_3 1 566.7841796875 2 566.784044 1131.55354 NaN NaN NaN NaN NaN NaN NaN 20.036 1 20.036 19.536 20.536 0 0 0 0 0.40038 1 2013 2013 0.6015 0 1 29264 8366 18538 18549 33888 33888 -0.00697893191932053 NTFYQNVL 8 Unmodified _NTFYQNVL_ 0 0 0 REV__Charlie1a_dup1382|chr4:2606350-2607474:-|1.3262517890393477|0.0150911774682031|6.46|151.0|18|2|sense REV__Charlie1a_dup1382|chr4:2606350-2607474:-|1.3262517890393477|0.0150911774682031|6.46|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.75152587890625 2 499.750724 997.486896 0.23648 0.00011818 0.074872 3.7417E-05 0.31135 0.0001556 499.7507716799796 69.414 0.49054 72.869 72.623 73.114 3.4548 53 35 2 0 0 0 0.82752 1 16055 16055 13.906 2.2658 1 131040 + 29265 17301 18539 18550 33889 33889 -0.011948054821914411 NTGKGYEQT 9 Unmodified _NTGKGYEQT_ 0 0 0 L1PA4_dup7064|chrX:56047266-56053280:-|1.42567306916641|0.0398766048423352|5.16|150.0|28|1|sense L1PA4_dup7064|chrX:56047266-56053280:-|1.42567306916641|0.0398766048423352|5.16|150.0|28|1|sense L1PA4_dup7064|chrX:56047266-56053280:-|1.42567306916641|0.0398766048423352|5.16|150.0|28|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.2331237792969 2 499.232896 996.451239 -0.17067 -8.5203E-05 0.30482 0.00015218 0.13415 6.6974E-05 499.2329403948486 32.914 0.92601 36.369 36.057 36.983 3.4547 160 73 3 0 0 0 0.47763 1 5696 5696 2.9952 0 1 368580 29266 14386 18540 18551 33890 33890 -0.047128877298519 NTGMQRPFA 9 Unmodified _NTGMQRPFA_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|19|1|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|19|1|sense MSMS UPN47_class_I_Rep_1 2 511.2481384277344 2 511.247826 1020.4811 NaN NaN NaN NaN NaN NaN NaN 21.523 1 25.198 24.698 25.698 3.6749 0 0 0 0.39428 1 2349 2349 2.0598 1.2661 1 + 29267 24055 18541 18552 33891 33891 -0.028322272655032066 NTHFCFLPW 9 Unmodified _NTHFCFLPW_ 0 0 0 REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|165|2|anti-sense REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|165|2|anti-sense MSMS UPN47_class_I_Rep_1 2 582.7689819335938 2 582.768394 1163.52224 NaN NaN NaN NaN NaN NaN NaN 24.846 1 28.595 28.095 29.095 3.7495 0 0 0 0.40038 1 3317 3317 0.6015 0 1 + 29268 25270 18542 18553 33892 33892 -0.05298466226031451 NTHILLVF 8 Unmodified _NTHILLVF_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|104|3|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|104|3|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|104|3|sense MSMS UPN48_class_I_Rep_2 6 478.7816467285156 2 478.781828 955.549102 NaN NaN NaN NaN NaN NaN NaN 67.542 1 71.038 70.538 71.538 3.4964 0 0 0 0.40292 1 15517 15517 6.7232 0 1 29269 10006 18543 18554 33893 33893 0.06954965656814238 NTHNPTWIQ 9 Unmodified _NTHNPTWIQ_ 0 0 0 REV__HERVH-int_dup3630|chrX:74121995-74126748:-|3.4715676057335134|0.4443302267445864|2.97|151.0|17|1|sense REV__HERVH-int_dup3630|chrX:74121995-74126748:-|3.4715676057335134|0.4443302267445864|2.97|151.0|17|1|sense MSMS UPN47_class_I_Rep_3 4 555.767578125 2 555.76998 1109.52541 NaN NaN NaN NaN NaN NaN NaN 22.621 1 25.972 25.472 26.472 3.3503 0 0 0 0.38784 1 2738 2738 3.5965 0.60125 1 + 29270 23671 18544 18555 33894 33894 -0.024974998476636756 NTIDQKIVER 10 Unmodified _NTIDQKIVER_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS nc|ENSG00000119969|Q9NRZ9-6|HELLS nc|ENSG00000119969|Q9NRZ9-6|HELLS MULTI-SECPEP UPN48_class_I_Rep_3 7 406.229248046875 3 405.894577 1214.6619 -0.0084902 -3.4461E-06 -0.16442 -6.6738E-05 -0.17291 -7.0184E-05 405.8945472931121 28.374 0.62045 32.116 31.917 32.537 3.7424 92 67 3 0 0 0 0.84575 1 3890 3890 7.0371 2.3212 1 64418 29271 2308 18545 18556 33895 33895 0.0631556959219779 NTIQIDEQF 9 Unmodified _NTIQIDEQF_ 0 0 0 REV__L1MB5_dup3411|chr8:47326453-47327382:-|1.458660157362053|0.0260650651163529|5.81|151.0|28|3|sense REV__L1MB5_dup3411|chr8:47326453-47327382:-|1.458660157362053|0.0260650651163529|5.81|151.0|28|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.2879638671875 2 554.269478 1106.5244 0.51659 0.00028633 -0.32054 -0.00017766 0.19606 0.00010867 554.2690982575399 52.277 0.3647 55.483 55.223 55.588 3.2055 29 24 2 0 0 0 0.42249 1 11702 11702 6.7232 0.96273 1 53545 + 29272 26055 18546 18557 33896 33896 -0.024597590072289677 NTKAAITF 8 Unmodified _NTKAAITF_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|18|2|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 433.24261474609375 2 433.242535 864.470518 0.13355 5.7859E-05 0.75605 0.00032755 0.8896 0.00038541 433.24293121569013 107.71 0.22198 111.39 111.24 111.46 3.6813 40 28 2 0 0 0 0.82752 1 25415 25415 9.3474 3.587 1 12783000 + 29273 30632 18547 18558 33897 33897 0.032861133517030794 NTKAAITF 8 Unmodified _NTKAAITF_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|18|2|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|18|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 433.242535 864.470518 0.095548 4.1395E-05 0.29307 0.00012697 0.38862 0.00016836 433.2427213190135 107.69 0.11901 111.37 111.31 111.43 3.6783 -0.0074574 -0.00018652 NaN 9.3474 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 13658000 + 29274 30632 18547 18558 0.032861133517030794 NTKAAITF 8 Unmodified _NTKAAITF_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|18|2|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|18|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 433.242535 864.470518 0.13355 5.7859E-05 0.75605 0.00032755 0.8896 0.00038541 433.24293121569013 107.71 0.22198 111.39 111.24 111.46 3.6813 0.0074574 0.00021464 NaN 9.3474 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 12783000 + 29275 30632 18547 18558 0.032861133517030794 NTKIIEMLKIS 11 Unmodified _NTKIIEMLKIS_ 0 0 0 L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|78|3|sense L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|78|3|sense L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|78|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 645.37890625 2 645.378506 1288.74246 0.4811 0.00031049 2.0988 0.0013545 2.5799 0.001665 645.3786412718812 71.803 0.12252 75.269 75.24 75.363 3.466 13 10 2 0 0 0 0.65821 1 16826 16826 2.4985 0 1 121340 29276 11944 18548 18559 33898 33898 0.10963714590866402 NTKKKKTRIIK 11 Unmodified _NTKKKKTRIIK_ 0 0 0 REV__L1M3_dup4142|chrY:13389031-13390671:-|1.6149649108498996|0.0521469287471801|4.95|84.0|28|2|sense REV__L1M3_dup4142|chrY:13389031-13390671:-|1.6149649108498996|0.0521469287471801|4.95|84.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 453.30487060546875 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 113.75 1 117.41 116.91 117.91 3.663 0 0 0 0.38417 1 27160 27160 0.094841 0 1 + 29277 24300 18549 18560 33899 33899 0.22873242364698854 NTKKRVPG 8 Unmodified _NTKKRVPG_ 0 0 0 REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|9|1|sense REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.2746887207031 2 450.274701 898.534849 0.18557 8.3558E-05 0.15182 6.836E-05 0.33739 0.00015192 450.27472573324854 89.161 0.1557 89.161 89.078 89.234 0 27 16 2 0 0 0 0.82752 1 21445 21445 0.69038 0 1 226520 + 29278 28833 18550 18561 33900 33900 0.08152313228526964 NTKKRVPG 8 Unmodified _NTKKRVPG_ 0 0 0 REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|9|1|sense REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.2749938964844 2 450.274701 898.534849 0.18547 8.3511E-05 0.22007 9.9091E-05 0.40553 0.0001826 450.27482262620236 89.689 0.38512 89.689 89.51 89.895 0 59 35 2 0 0 0 0.82752 1 21631 21631 0.69038 0 1 271080 + 29279 28833 18550 18561 33901 33901 0.08152313228526964 NTKKRVPG 8 Unmodified _NTKKRVPG_ 0 0 0 REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|9|1|sense REV__L1P2_dup1154|chr10:130152319-130154468:-|1.6349023994707943|0.2273441850691426|2.85|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 450.2744445800781 2 450.274701 898.534849 0.19124 8.6109E-05 0.10933 4.9227E-05 0.30056 0.00013534 450.2745736765852 84.668 0.1125 88.417 88.346 88.459 3.7494 18 13 2 0 0 0 0.72333 1 20079 20079 0.69038 0 1 422590 + 29280 28833 18550 18561 33902 33902 0.08152313228526964 NTKKVYLP 8 Unmodified _NTKKVYLP_ 0 0 0 REV__MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense REV__MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense MSMS UPN48_class_I_Rep_1 5 481.7871398925781 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 115.44 1 119.07 118.57 119.57 3.6282 0 0 0 0.40738 1 28083 28083 0.79363 0 1 + 29281 31379 18551 18562 33903 33903 0.07734948311224343 NTKWCLAF 8 Unmodified _NTKWCLAF_ 0 0 0 PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|31|3|sense PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|31|3|sense PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 491.7428894042969 2 491.744388 981.474223 NaN NaN NaN NaN NaN NaN NaN 39.311 1 43.041 42.541 43.541 3.7297 0 0 0 0.38112 1 6959 6959 14.838 0.25658 1 29282 16879 18552 18563 33904 33904 -0.017255401460943176 NTLIIPEKF 9 Unmodified _NTLIIPEKF_ 0 0 0 L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.8131103515625 2 537.813325 1073.6121 0.35479 0.00019081 -0.7456 -0.000401 -0.39081 -0.00021018 537.812745529624 108.93 0.58083 108.93 108.82 109.4 0 73 38 3 0 0 0 0.40174 1 26705 26705 7.9102 1.187 1 4648100 29283 11523 18553 18564 33905 33905 0.07823486654183398 NTLIIPEKF 9 Unmodified _NTLIIPEKF_ 0 0 0 L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 537.81298828125 2 537.813325 1073.6121 0.57923 0.00031152 -0.55168 -0.0002967 0.027553 1.4818E-05 537.8128658368768 108.81 0.50334 112.34 112.16 112.66 3.5333 107 56 2 0 0 0 0.40174 1 26435 26435 7.9102 0.62092 1 9088800 29284 11523 18553 18564 33906 33906 0.07823486654183398 NTLIIPEKF 9 Unmodified _NTLIIPEKF_ 0 0 0 L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 537.8136596679688 2 537.813325 1073.6121 0.48279 0.00025965 -0.57731 -0.00031048 -0.094517 -5.0833E-05 537.8128433013948 108.78 0.34663 112.32 112.18 112.52 3.5382 87 37 3 0 0 0 0.11959 1 26615 26615 4.3292 0.73274 1 7895400 29285 11523 18553 18564 33907 33907 0.07823486654183398 NTLIIPEKF 9 Unmodified _NTLIIPEKF_ 0 0 0 L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.814208984375 2 537.813325 1073.6121 0.35404 0.00019041 -0.42938 -0.00023093 -0.075335 -4.0516E-05 537.8129150771769 108.75 0.4129 112.38 112.25 112.66 3.6321 73 46 3 0 0 0 0.40174 1 26306 26306 7.9102 0.62092 1 11244000 29286 11523 18553 18564 33908 33908 0.07823486654183398 NTLIIPEKF 9 Unmodified _NTLIIPEKF_ 0 0 0 L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense L1MC4_dup7792|chr5:79622458-79622792:-|1.306953894077988|0.0871105862752672|3.91|151.0|17|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 537.88134765625 2 537.813325 1073.6121 0.57448 0.00030896 -0.83358 -0.00044831 -0.2591 -0.00013935 538.3144511756976 108.97 0.22421 112.65 112.54 112.77 3.6751 34 24 2 0 0 0 0.11959 1 25835 25835 4.3292 0 1 6604700 29287 11523 18553 18564 33909 33909 0.07823486654183398 NTLSVFVEI 9 Unmodified _NTLSVFVEI_ 0 0 0 REV__ENSG00000151503|ENST00000534548|NCAPD3 REV__ENSG00000151503|ENST00000534548|NCAPD3 MSMS UPN48_class_I_Rep_1 5 511.2823486328125 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 62.85 1 66.313 65.813 66.813 3.4625 0 0 0 0.25702 1 14100 14100 13.042 3.6593 1 + 29288 19658 18554 18565 33910 33910 0.03970920866152028 NTPCPPMHK 9 Unmodified _NTPCPPMHK_ 0 0 0 REV__AluJr4_dup19119|chr20:3968327-3968626:+|1.3319623564604424|0.0043110264334261|8.27|151.0|16|1|anti-sense REV__AluJr4_dup19119|chr20:3968327-3968626:+|1.3319623564604424|0.0043110264334261|8.27|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 512.7298583984375 2 512.73878 1023.46301 NaN NaN NaN NaN NaN NaN NaN 114.72 1 114.72 114.22 115.22 0 0 0 0 0.39518 1 28362 28362 1.8442 1.0506 1 + 29289 17073 18555 18566 33911 33911 -0.04778685511871572 NTPQKVPV 8 Unmodified _NTPQKVPV_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-4|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MSMS UPN46_class_I_Rep_3 1 441.7561950683594 2 441.75581 881.497067 NaN NaN NaN NaN NaN NaN NaN 107.92 1 107.92 107.42 108.42 0 0 0 0 0.40404 1 26331 26331 5.2307 0.47466 1 29290 4516 18556 18567 33912 33912 0.05157802243047627 NTPQKVPV 8 Unmodified _NTPQKVPV_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-4|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS UPN48_class_I_Rep_3 7 441.7552490234375 2 441.75581 881.497067 0.14966 6.6112E-05 -1.2801 -0.0005655 -1.1305 -0.00049939 441.7551147660058 107.71 0.116 111.39 111.34 111.45 3.6813 24 13 2 0 0 0 0.82752 1 25406 25406 5.2307 0.47466 1 7538600 29291 4516 18556 18567 33913 33913 0.05157802243047627 NTRELFEG 8 Unmodified _NTRELFEG_ 0 0 0 ENSG00000139890|ENST00000267396|REM2 ENSG00000139890|ENST00000267396|REM2 ENSG00000139890|ENST00000267396|REM2 MSMS UPN47_class_I_Rep_1 2 483.2378845214844 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 35.559 1 39.236 38.736 39.736 3.6762 0 0 0 0.40643 1 6536 6536 2.0598 0 1 29292 3158 18557 18568 33914 33914 -0.022242800046115008 NTRELFEG 8 Unmodified _NTRELFEG_ 0 0 0 ENSG00000139890|ENST00000267396|REM2 ENSG00000139890|ENST00000267396|REM2 ENSG00000139890|ENST00000267396|REM2 MULTI-MSMS UPN47_class_I_Rep_2 3 483.2378234863281 2 483.237981 964.461409 -0.19043 -9.2024E-05 -0.66156 -0.00031969 -0.85199 -0.00041172 483.2376981977426 36.023 0.13231 39.435 39.371 39.504 3.4114 12 10 2 0 0 0 0.82752 1 6717 6717 3.9444 0 1 38217 29293 3158 18557 18568 33915 33915 -0.022242800046115008 NTRELFEG 8 Unmodified _NTRELFEG_ 0 0 0 ENSG00000139890|ENST00000267396|REM2 ENSG00000139890|ENST00000267396|REM2 ENSG00000139890|ENST00000267396|REM2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 483.237981 964.461409 -0.29183 -0.00014102 -1.5259 -0.00073739 -1.8178 -0.00087841 483.23738464683856 36.051 0.070549 39.728 39.707 39.777 3.6762 0.14634 -0.00063601 NaN 3.9444 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 21263 29294 3158 18557 18568 -0.022242800046115008 NTRKSYKT 8 Unmodified _NTRKSYKT_ 0 0 0 L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|14|2|sense L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|14|2|sense L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.2751159667969 2 499.274898 996.535243 0.13365 6.6729E-05 2.945 0.0014704 3.0787 0.0015371 499.2758357225229 67.27 0.19294 70.631 70.568 70.761 3.3611 20 15 2 0 0 0 0.82752 1 16164 16164 1.8442 0 1 65184 29295 8511 18558 18569 33916 33916 0.03683688157718734 NTRKSYKT 8 Unmodified _NTRKSYKT_ 0 0 0 L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|14|2|sense L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|14|2|sense L1M1_dup224|chr1:93315451-93316294:+|1.1695436193467594|0.1312753946278512|3.16|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 499.274898 996.535243 0.22592 0.00011279 3.2393 0.0016173 3.4652 0.0017301 499.275844617399 67.645 0.23184 70.836 70.723 70.955 3.1914 0.10253 0.00016864 NaN 1.8442 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 74406 29296 8511 18558 18569 0.03683688157718734 NTRYRHLYAKL 11 Unmodified _NTRYRHLYAKL_ 0 0 0 REV__MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|21|3|sense REV__MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|21|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.26995849609375 3 478.936999 1433.78917 0.13965 6.6882E-05 -1.0587 -0.00050705 -0.91904 -0.00044016 478.93647269463827 45.499 0.63594 49.136 48.832 49.468 3.6369 63 47 2 0 0 0 0.67113 2 8763 8763;8768 1.3296 0.70888 1 213270 + 29297 31359 18559 18570 33917;33918 33917 0.08962335257047016 NTRYRHLYAKL 11 Unmodified _NTRYRHLYAKL_ 0 0 0 REV__MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|21|3|sense REV__MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|21|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 479.26995849609375 3 478.936999 1433.78917 0.13965 6.6882E-05 -1.0587 -0.00050705 -0.91904 -0.00044016 478.93647269463827 45.499 0.63594 49.136 48.832 49.468 3.6369 63 47 2 0 0 0 22.551 1 8763 8763 1.3296 0.11481 1 213270 + 29298 31359 18559 18570 33919 33919 0.08962335257047016 NTSDTGWAK 9 Unmodified _NTSDTGWAK_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3;nc|ENSG00000005187|Q53FZ2-2|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS UPN47_class_I_Rep_1 2 490.2278137207031 2 490.227613 978.440674 -0.28878 -0.00014157 0.6464 0.00031688 0.35762 0.00017531 490.2278349629175 32.763 0.76808 36.476 36.173 36.941 3.7131 125 62 3 0 0 0 0.24936 1 5690 5690 17.113 1.2657 1 307480 29299 693 18560 18571 33920 33920 -0.049408703842800605 NTSHKETY 8 Unmodified _NTSHKETY_ 0 0 0 REV__L1MC4a_dup3308|chr5:151046427-151047701:+|1.0043990275583294|0.2692694715957517|1.9|151.0|26|2|sense REV__L1MC4a_dup3308|chr5:151046427-151047701:+|1.0043990275583294|0.2692694715957517|1.9|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.2216796875 2 490.227613 978.440674 -0.38716 -0.00018979 0.47715 0.00023391 0.089999 4.412E-05 490.22778236272677 33.111 0.98649 36.398 36.125 37.112 3.2867 138 75 2 0 0 0 0.82752 1 5804 5804 10.824 0 1 364180 + 29300 26980 18561 18572 33921 33921 -0.049408703842800605 NTSQDHLQDTQ 11 Unmodified _NTSQDHLQDTQ_ 0 0 0 L1PA13_dup1280|chr3:52594183-52595088:-|5.142512852928319|0.0577149930964443|6.48|151.0|1|1|sense L1PA13_dup1280|chr3:52594183-52595088:-|5.142512852928319|0.0577149930964443|6.48|151.0|1|1|sense L1PA13_dup1280|chr3:52594183-52595088:-|5.142512852928319|0.0577149930964443|6.48|151.0|1|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 643.2831420898438 2 643.784012 1285.55347 0.70807 0.00045584 -0.0029325 -1.8879E-06 0.70514 0.00045396 643.7839054758226 70.658 0.4252 70.658 70.526 70.952 0 61 44 2 0 0 0 22.551 1 16251 16251 7.1017 0 1 257410 29301 13733 18562 18573 33922 33922 -0.07788266448915238 NTTSTMSRTQF 11 Unmodified _NTTSTMSRTQF_ 0 0 0 L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|26|2|sense L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|26|2|sense L1MEf_dup8683|chr12:117013906-117015417:-|2.4017206589344235|0.2887601382108036|3.06|151.0|26|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 637.2967529296875 2 637.295701 1272.57685 0.69763 0.00044459 0.2874 0.00018316 0.98503 0.00062776 637.2957886883787 72.57 0.52851 72.57 72.341 72.869 0 115 56 3 0 0 0 0.56174 2 16771 16771;16844 6.1918 0.46 1 219450 29302 13329 18563 18574 33923;33924 33923 -0.04853543935928428 NTVGTEAHSLP 11 Unmodified _NTVGTEAHSLP_ 0 0 0 REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|71|3|sense REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|71|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.7798461914062 2 563.280377 1124.5462 -0.061887 -3.486E-05 -1.4314 -0.00080629 -1.4933 -0.00084115 563.7806047297837 30.324 0.48749 34.069 33.779 34.267 3.7449 60 34 3 0 0 0 0.65821 1 4878 4878 2.4985 0.19575 1 78476 + 29303 24522 18564 18575 33925 33925 -0.011089542586660173 NTVGTEAHSLP 11 Unmodified _NTVGTEAHSLP_ 0 0 0 REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|71|3|sense REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|71|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 563.280377 1124.5462 -0.061887 -3.486E-05 -1.4314 -0.00080629 -1.4933 -0.00084115 563.7806047297837 30.324 0.48749 34.069 33.779 34.267 3.7449 0.069125 -0.00035682 NaN 2.4985 60 34 3 NaN NaN NaN NaN 0 NaN NaN 0 78476 + 29304 24522 18564 18575 -0.011089542586660173 NTWFNKKHTN 10 Unmodified _NTWFNKKHTN_ 0 0 0 REV__L1ME4b_dup4320|chr3:125241439-125241965:-|1.2805466787924276|0.0400231793967899|5.0|151.0|32|2|anti-sense REV__L1ME4b_dup4320|chr3:125241439-125241965:-|1.2805466787924276|0.0400231793967899|5.0|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_1 5 645.32373046875 2 645.322911 1288.63127 NaN NaN NaN NaN NaN NaN NaN 110.32 1 113.95 113.45 114.45 3.6326 0 0 0 0.53105 1 26781 26781 1.4819 0 1 + 29305 28297 18565 18576 33926 33926 -0.0015016400220702053 NTYFKRHKR 9 Unmodified _NTYFKRHKR_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MSMS UPN47_class_I_Rep_2 3 625.236328125 2 625.349263 1248.68397 NaN NaN NaN NaN NaN NaN NaN 64.605 1 67.86 67.36 68.36 3.2556 0 0 0 0.39598 1 15402 15402 1.6526 0.17072 1 + 29306 21281 18566 18577 33927 33927 0.06957838851258202 NTYKSINV 8 Unmodified _NTYKSINV_ 0 0 0 L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|57|2|sense;L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|12|1|sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|57|2|sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|57|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 469.779052734375 2 469.750724 937.486896 0.0085928 4.0365E-06 -2.5047 -0.0011766 -2.4961 -0.0011726 469.74976724089987 84.251 0.062866 87.612 87.578 87.64 3.3615 9 7 2 0 0 0 0.72333 1 21142 21142 0.69038 0.088878 1 38539 29307 9433 18567 18578 33928 33928 0.01565194517809232 NTYQIGHF 8 Unmodified _NTYQIGHF_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|218|1|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|218|1|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|218|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.7369079589844 2 490.235242 978.45593 -0.27014 -0.00013243 0.42322 0.00020748 0.15308 7.5046E-05 490.23535779666327 37.794 0.99261 41.459 41.041 42.034 3.6652 128 75 2 0 0 0 0.82752 1 7115 7115 2.3027 0 1 125040 29308 7985 18568 18579 33929 33929 -0.034159587964154525 NTYQIGHF 8 Unmodified _NTYQIGHF_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|218|1|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|218|1|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|218|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.7366943359375 2 490.235242 978.45593 -0.11176 -5.4787E-05 0.070026 3.4329E-05 -0.041732 -2.0458E-05 490.2352114941017 38.057 0.8071 41.444 41.121 41.928 3.3879 114 65 2 0 0 0 0.82752 1 7264 7264 2.3027 0 1 108520 29309 7985 18568 18579 33930 33930 -0.034159587964154525 NTYQNSSSTF 10 Unmodified _NTYQNSSSTF_ 0 0 0 L1MB5_dup6118|chr11:119247821-119249269:+|3.1366866691360946|0.0202145644520916|7.28|151.0|38|3|sense L1MB5_dup6118|chr11:119247821-119249269:+|3.1366866691360946|0.0202145644520916|7.28|151.0|38|3|sense L1MB5_dup6118|chr11:119247821-119249269:+|3.1366866691360946|0.0202145644520916|7.28|151.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.746826171875 2 574.746367 1147.47818 0.52982 0.00030451 0.29259 0.00016816 0.82241 0.00047268 574.7465537854781 58.596 0.48433 62.083 61.875 62.36 3.487 40 31 2 0 0 0 0.53794 1 12819 12819 7.1017 2.7725 1 74966 29310 10634 18569 18580 33931 33931 -0.08965823909329629 NTYQNSSSTF 10 Unmodified _NTYQNSSSTF_ 0 0 0 L1MB5_dup6118|chr11:119247821-119249269:+|3.1366866691360946|0.0202145644520916|7.28|151.0|38|3|sense L1MB5_dup6118|chr11:119247821-119249269:+|3.1366866691360946|0.0202145644520916|7.28|151.0|38|3|sense L1MB5_dup6118|chr11:119247821-119249269:+|3.1366866691360946|0.0202145644520916|7.28|151.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.74853515625 2 574.746367 1147.47818 0.57084 0.00032809 0.70922 0.00040762 1.2801 0.0007357 574.7467173476803 58.627 0.43753 62.125 61.885 62.322 3.4987 32 24 2 0 0 0 0.55949 1 12799 12799 4.1895 1.691 1 76585 29311 10634 18569 18580 33932 33932 -0.08965823909329629 NTYRGFFF 8 Unmodified _NTYRGFFF_ 0 0 0 L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|23|3|anti-sense L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|23|3|anti-sense L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.2896118164062 2 526.253434 1050.49232 NaN NaN NaN NaN NaN NaN NaN 26.626 1 30.388 29.888 30.888 3.7624 0 0 0 0.40738 1 3836 3836 0.79363 0.10326 1 29312 10551 18570 18581 33933 33933 -0.030910818997199385 NVAARYYL 8 Unmodified _NVAARYYL_ 0 0 0 REV__L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|5|1|sense REV__L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 485.7544860839844 2 485.261259 968.507966 -0.32785 -0.00015909 -2.79 -0.0013539 -3.1179 -0.001513 485.259325492588 25.12 0.10597 28.869 28.801 28.907 3.7495 10 9 2 0 0 0 0.72333 1 3406 3406 2.5775 0.51773 1 27711 + 29313 30755 18571 18582 33934 33934 0.022452046173157214 NVADILFVR 9 Unmodified _NVADILFVR_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000124486.13,USP9X,chrX,+,I33.1,41205494,41210508|26|10.38|1|intron ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS UPN48_class_I_Rep_1 5 523.8037109375 2 523.803291 1045.59203 0.38365 0.00020096 -0.4301 -0.00022529 -0.046447 -2.4329E-05 523.803135648941 65.684 0.62654 69.136 68.804 69.431 3.4516 85 43 3 0 0 0 0.12096 2 14944 14902;14944 29.841 16.798 1 234040 29314 2468 18572 18583 33935;33936 33936 0.07105735714230832 NVADILFVR 9 Unmodified _NVADILFVR_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000124486.13,USP9X,chrX,+,I33.1,41205494,41210508|26|10.38|1|intron ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS UPN48_class_I_Rep_2 6 523.8030395507812 2 523.803291 1045.59203 0.41402 0.00021687 -0.13554 -7.0997E-05 0.27848 0.00014587 523.8031014938072 65.463 0.65559 68.943 68.697 69.352 3.4792 78 46 2 0 0 0 0.071184 3 14901 14818;14859;14901 40.725 21.363 1 199920 29315 2468 18572 18583 33937;33938;33939 33939 0.07105735714230832 NVADILFVR 9 Unmodified _NVADILFVR_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000124486.13,USP9X,chrX,+,I33.1,41205494,41210508|26|10.38|1|intron ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS UPN48_class_I_Rep_3 7 523.8032836914062 2 523.803291 1045.59203 0.4607 0.00024131 -0.16088 -8.4271E-05 0.29981 0.00015704 523.8031356548365 65.362 0.83157 68.87 68.502 69.334 3.5077 91 54 2 0 0 0 0.052941 3 14788 14707;14751;14788 47.732 22.741 1 192120 29316 2468 18572 18583 33940;33941;33942 33942 0.07105735714230832 NVAFLMMLI 9 Unmodified _NVAFLMMLI_ 0 0 0 L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|96|1|anti-sense L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|96|1|anti-sense L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|96|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 526.286376953125 2 526.287574 1050.56059 0.46455 0.00024449 -1.1206 -0.00058978 -0.65609 -0.00034529 526.2869696811905 62.641 0.58554 66.152 65.946 66.531 3.5104 55 38 2 0 0 0 0.40174 1 13914 13914 7.9102 0 1 146780 29317 15469 18573 18584 33943 33943 0.037337033642870665 NVALDLLVKV 10 Unmodified _NVALDLLVKV_ 0 0 0 REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 542.34228515625 2 542.342249 1082.66995 NaN NaN NaN NaN NaN NaN NaN 69.604 1 73.059 72.559 73.559 3.4548 0 0 0 0.53105 1 16160 16160 5.2969 0 1 + 29318 27206 18574 18585 33944 33944 0.1319174857960661 NVALDLLVKV 10 Unmodified _NVALDLLVKV_ 0 0 0 REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 542.3427734375 2 542.342249 1082.66995 NaN NaN NaN NaN NaN NaN NaN 69.747 1 73.202 72.702 73.702 3.4548 0 0 0 0.53105 1 16202 16202 5.2969 0 1 + 29319 27206 18574 18585 33945 33945 0.1319174857960661 NVALDLLVKV 10 Unmodified _NVALDLLVKV_ 0 0 0 REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 542.3427734375 2 542.342249 1082.66995 NaN NaN NaN NaN NaN NaN NaN 69.458 1 72.979 72.479 73.479 3.5216 0 0 0 0.53105 1 16092 16092 8.1555 0 1 + 29320 27206 18574 18585 33946 33946 0.1319174857960661 NVALDLLVKV 10 Unmodified _NVALDLLVKV_ 0 0 0 REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 542.3424072265625 2 542.342249 1082.66995 NaN NaN NaN NaN NaN NaN NaN 69.602 1 73.123 72.623 73.623 3.5216 0 0 0 0.53105 1 16134 16134 5.2969 0 1 + 29321 27206 18574 18585 33947 33947 0.1319174857960661 NVALDLLVKV 10 Unmodified _NVALDLLVKV_ 0 0 0 REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 542.3424072265625 2 542.342249 1082.66995 NaN NaN NaN NaN NaN NaN NaN 69.472 1 72.985 72.485 73.485 3.5128 0 0 0 0.53105 1 16006 16006 5.2969 0 1 + 29322 27206 18574 18585 33948 33948 0.1319174857960661 NVALDLLVKV 10 Unmodified _NVALDLLVKV_ 0 0 0 REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense REV__L1MCa_dup4585|chrX:136702007-136703012:+|2.1590137463280743|0.0118780273517495|7.51|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 542.3424072265625 2 542.342249 1082.66995 0.57868 0.00031384 0.024398 1.3232E-05 0.60308 0.00032707 542.3421518034249 69.55 0.22119 73.063 72.972 73.194 3.5129 24 17 2 0 0 0 0.84575 1 16006 16006 5.2969 0 1 73691 + 29323 27206 18574 18585 33949 33949 0.1319174857960661 NVCEDIDECT 10 Unmodified _NVCEDIDECT_ 0 0 0 REV__nc|ENSG00000049323|Q14766-3|LTBP1 REV__nc|ENSG00000049323|Q14766-3|LTBP1 MSMS UPN47_class_I_Rep_2 3 570.7124633789062 2 570.712821 1139.41109 NaN NaN NaN NaN NaN NaN NaN 40.847 1 44.213 43.713 44.713 3.3655 0 0 0 0.53105 1 8176 8176 1.3295 0 1 + 29324 17675 18575 18586 33950 33950 -0.1530393850694054 NVDEGIYQL 9 Unmodified _NVDEGIYQL_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS UPN47_class_I_Rep_1 2 525.7590942382812 2 525.758746 1049.50294 0.34898 0.00018348 -0.23249 -0.00012224 0.11648 6.1241E-05 525.7585354906806 60.234 0.45124 63.632 63.444 63.895 3.3982 70 40 2 0 0 0 0.35123 1 14038 14038 10.8 1.4164 1 98927 29325 2190 18576 18587 33951 33951 -0.019831440359666885 NVDEGIYQL 9 Unmodified _NVDEGIYQL_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS UPN47_class_I_Rep_2 3 525.75927734375 2 525.758746 1049.50294 0.14269 7.502E-05 0.14513 7.6302E-05 0.28782 0.00015132 525.7586347968041 60.513 0.54239 63.779 63.476 64.019 3.2654 62 45 2 0 0 0 0.22932 1 14125 14125 18.373 3.1246 1 106170 29326 2190 18576 18587 33952 33952 -0.019831440359666885 NVDSLITRL 9 Unmodified _NVDSLITRL_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN47_class_I_Rep_1 2 515.7982788085938 2 515.798206 1029.58186 0.28552 0.00014727 -0.22176 -0.00011439 0.063752 3.2883E-05 515.7981133135025 58.89 0.80923 62.307 61.994 62.803 3.4171 132 56 3 0 0 0 0.020867 5 13617 13574;13617;13646;13695;13777 62.869 15.137 1 430440 29327 5597 18577 18588 33953;33954;33955;33956;33957 33954 0.06825127988986424 NVDSLITRL 9 Unmodified _NVDSLITRL_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN47_class_I_Rep_2 3 515.7977294921875 2 515.798206 1029.58186 0.15681 8.088E-05 0.33326 0.0001719 0.49007 0.00025278 515.798244744303 59.266 0.97984 62.539 62.057 63.036 3.2731 101 67 2 0 0 0 0.068604 5 13839 13720;13760;13839;13858;13920 41.347 13.113 1 472370 29328 5597 18577 18588 33958;33959;33960;33961;33962 33960 0.06825127988986424 NVDSLITRL 9 Unmodified _NVDSLITRL_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS UPN47_class_I_Rep_3 4 515.79833984375 2 515.798206 1029.58186 0.19129 9.8668E-05 0.27711 0.00014293 0.4684 0.0002416 515.7982626729381 59.198 0.84827 62.363 62.143 62.992 3.1658 99 57 2 0 0 0 0.043112 5 13921 13798;13845;13877;13921;13999 51.765 17.543 1 267860 29329 5597 18577 18588 33963;33964;33965;33966;33967 33966 0.06825127988986424 NVEDRPHLA 9 Unmodified _NVEDRPHLA_ 0 0 0 REV__L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|267|2|anti-sense REV__L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|267|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.2706909179688 2 525.76998 1049.52541 -0.28707 -0.00015093 0.55313 0.00029082 0.26606 0.00013989 525.7698963324315 27.146 0.53942 30.645 30.413 30.953 3.4986 97 47 3 0 0 0 0.48846 1 4100 4100 1.8442 0 1 88815 + 29330 29755 18578 18589 33968 33968 0.0026250015232562873 NVEGVAKNNNI 11 Unmodified _NVEGVAKNNNI_ 0 0 0 ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1 ENSG00000082438|ENST00000652658|COBLL1 ENSG00000082438|ENST00000652658|COBLL1 MSMS UPN48_class_I_Rep_3 7 586.3092041015625 2 586.306926 1170.5993 NaN NaN NaN NaN NaN NaN NaN 32.696 1 36.386 35.886 36.886 3.6896 0 0 0 0.38417 1 5000 5000 2.4985 0.19575 1 29331 1226 18579 18590 33969 33969 0.020824235239842892 NVEICQILF 9 Unmodified _NVEICQILF_ 0 0 0 L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|131|1|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|131|1|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|131|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.2847900390625 2 539.78371 1077.55287 0.47001 0.0002537 1.7887 0.00096551 2.2587 0.0012192 540.2843178126102 52.589 0.23344 55.922 55.849 56.082 3.3332 27 22 2 0 0 0 0.42249 1 11785 11785 6.7232 0.99131 1 301910 29332 12361 18580 18591 33970 33970 0.017192673683439352 NVEKKIDKY 9 Unmodified _NVEKKIDKY_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS UPN47_class_I_Rep_1 2 568.818115234375 2 568.819138 1135.62372 -0.12731 -7.2419E-05 -0.0042807 -2.4349E-06 -0.13159 -7.4853E-05 568.8190324398289 16 0.23776 19.497 19.412 19.65 3.4968 48 28 2 0 0 0 0.49187 1 959 959 1.4819 0 1 29734 29333 3253 18581 18592 33971 33971 0.06133683677512636 NVEKLKPL 8 Unmodified _NVEKLKPL_ 0 0 0 L1MB2_dup1410|chr3:58406574-58407535:-|1.1897230768840297|0.0524351659012677|4.5|151.0|19|2|sense;L1MB2_dup1706|chr3:185682536-185683411:+|1.7637274126722595|0.0393030629753134|5.49|147.0|5|1|sense L1MB2_dup1410|chr3:58406574-58407535:-|1.1897230768840297|0.0524351659012677|4.5|151.0|19|2|sense L1MB2_dup1410|chr3:58406574-58407535:-|1.1897230768840297|0.0524351659012677|4.5|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 471.2971496582031 2 470.794935 939.575317 -0.31312 -0.00014742 -0.32219 -0.00015168 -0.63531 -0.0002991 470.79479410062976 37.442 1.1937 41.108 40.687 41.881 3.6652 232 90 3 0 0 0 0.82752 1 7261 7261 2.3027 0 1 410080 29334 10212 18582 18593 33972 33972 0.10311234828270699 NVFNTILTTR 10 Unmodified _NVFNTILTTR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MSMS UPN48_class_I_Rep_1 5 589.8297729492188 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 60.692 1 64.166 63.666 64.666 3.4737 0 0 0 0.53105 1 13447 13447 12.873 5.5834 1 29335 2883 18583 18594 33973 33973 0.0638048842608896 NVFNTILTTR 10 Unmodified _NVFNTILTTR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MULTI-MSMS UPN48_class_I_Rep_3 7 589.8301391601562 2 589.830037 1177.64552 0.50248 0.00029638 -0.76551 -0.00045152 -0.26303 -0.00015514 589.8294823008093 60.497 0.087593 64.014 63.99 64.078 3.5169 9 7 2 0 0 0 0.41414 1 13302 13302 18.373 6.1324 1 82554 29336 2883 18583 18594 33974 33974 0.0638048842608896 NVFNTILTTR 10 Unmodified _NVFNTILTTR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MSMS UPN48_class_I_Rep_3 7 589.8307495117188 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 60.359 1 63.875 63.375 64.375 3.5169 0 0 0 0.53105 1 13253 13253 23.801 13.727 1 29337 2883 18583 18594 33975 33975 0.0638048842608896 NVFNTILTTR 10 Unmodified _NVFNTILTTR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MSMS UPN48_class_I_Rep_3 7 589.82958984375 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 60.406 1 63.923 63.423 64.423 3.5169 0 0 0 0.53105 1 13268 13268 22.658 6.509 1 29338 2883 18583 18594 33976 33976 0.0638048842608896 NVFQILFWL 9 Unmodified _NVFQILFWL_ 0 0 0 L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|143|2|anti-sense L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|143|2|anti-sense L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|143|2|anti-sense MSMS UPN48_class_I_Rep_3 7 590.3327026367188 2 590.331685 1178.64882 NaN NaN NaN NaN NaN NaN NaN 60.333 1 63.849 63.349 64.349 3.5169 0 0 0 0.38478 1 13245 13245 4.3292 0.73274 1 29339 13423 18584 18595 33977 33977 0.0666378327075563 NVFRYCQMS 9 Unmodified _NVFRYCQMS_ 0 0 0 MER20_dup1223|chr2:24736671-24736884:-|1.0693674233678694|0.020018813807959|5.74|149.0|12|2|anti-sense MER20_dup1223|chr2:24736671-24736884:-|1.0693674233678694|0.020018813807959|5.74|149.0|12|2|anti-sense MER20_dup1223|chr2:24736671-24736884:-|1.0693674233678694|0.020018813807959|5.74|149.0|12|2|anti-sense MSMS UPN47_class_I_Rep_1 2 574.272705078125 2 574.254794 1146.49503 NaN NaN NaN NaN NaN NaN NaN 34.582 1 38.267 37.767 38.767 3.6859 0 0 0 0.39518 1 6241 6241 1.8442 0 1 29340 15832 18585 18596 33978 33978 -0.0723531782871305 NVGKYLQTV 9 Unmodified _NVGKYLQTV_ 0 0 0 L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|53|3|sense L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|53|3|sense L1MA7_dup3602|chr7:92889851-92891729:+|1.1053986293450029|0.0021360109243622|9.02|148.0|53|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.2861022949219 2 511.287474 1020.5604 0.26562 0.00013581 -0.17984 -9.1952E-05 0.085776 4.3856E-05 511.287314437519 59.296 0.66941 62.713 62.394 63.063 3.4171 81 47 2 0 0 0 0.43153 1 13685 13685 6.2058 0.47393 1 224380 29341 10021 18586 18597 33979 33979 0.05093742960286818 NVHIKHYL 8 Unmodified _NVHIKHYL_ 0 0 0 REV__L1MCa_dup5130|chr11:5701350-5701604:-|1.1697334675244313|0.0965561306247657|3.6|150.0|12|3|sense REV__L1MCa_dup5130|chr11:5701350-5701604:-|1.1697334675244313|0.0965561306247657|3.6|150.0|12|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 512.7728881835938 2 512.290351 1022.56615 0.29107 0.00014911 -1.7541 -0.00089859 -1.463 -0.00074948 512.2892687538509 77.605 0.049019 80.874 80.848 80.897 3.269 6 4 2 0 0 0 0.72333 1 19330 19330 8.5933 0 1 32296 + 29342 27211 18587 18598 33980 33980 0.05576886262599601 NVHRRCETN 9 Unmodified _NVHRRCETN_ 0 0 0 ENSG00000171132|ENST00000306156|PRKCE ENSG00000171132|ENST00000306156|PRKCE ENSG00000171132|ENST00000306156|PRKCE MULTI-SECPEP UPN47_class_I_Rep_3 4 564.7700805664062 2 564.769988 1127.52542 0.48464 0.00027371 0.90445 0.0005108 1.3891 0.00078451 564.7694378518652 49.952 1.425 53.178 52.765 54.19 3.2262 206 78 4 0 0 0 0.12477 1 11173 11173 1.6526 0 1 396710 29343 4508 18588 18599 33981 33981 -0.03323823119308145 NVHSNTFH 8 Unmodified _NVHSNTFH_ 0 0 0 L1MB8_dup1198|chr2:23834900-23835654:+|1.7248074794365074|0.0114392607815163|7.24|151.0|13|2|sense L1MB8_dup1198|chr2:23834900-23835654:+|1.7248074794365074|0.0114392607815163|7.24|151.0|13|2|sense L1MB8_dup1198|chr2:23834900-23835654:+|1.7248074794365074|0.0114392607815163|7.24|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 478.677978515625 2 478.222665 954.430778 NaN NaN NaN NaN NaN NaN NaN 34.32 1 37.999 37.499 38.499 3.6797 0 0 0 0.40625 1 5440 5440 2.3027 0 1 29344 10918 18589 18600 33982 33982 -0.048260135990062736 NVIALSQFVV 10 Unmodified _NVIALSQFVV_ 0 0 0 REV__L1ME1_dup29008|chr19:16209885-16210547:-|1.0946046934659066|0.0318236582889405|5.1|151.0|41|3|anti-sense REV__L1ME1_dup29008|chr19:16209885-16210547:-|1.0946046934659066|0.0318236582889405|5.1|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.3177490234375 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 80.814 1 84.301 83.801 84.801 3.4874 0 0 0 0.53105 1 20144 20144 1.6526 0 1 + 29345 27738 18590 18601 33983 33983 0.08222889028479585 NVIFHATPK 9 Unmodified _NVIFHATPK_ 0 0 0 REV__L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|171|3|sense REV__L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|171|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.789306640625 2 513.790184 1025.56581 -0.2761 -0.00014186 -0.63033 -0.00032386 -0.90643 -0.00046571 513.789792828787 35.044 1.048 38.308 37.973 39.021 3.2639 135 76 2 0 0 0 0.48846 1 6636 6636 1.8442 0 1 150220 + 29346 30072 18591 18602 33984 33984 0.05405466542742943 NVIHTKYI 8 Unmodified _NVIHTKYI_ 0 0 0 L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|18|2|sense L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|18|2|sense L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 494.7182312011719 2 494.284734 986.554916 NaN NaN NaN NaN NaN NaN NaN 35.447 1 39.134 38.634 39.634 3.6877 0 0 0 0.40604 1 5842 5842 2.5775 0 1 29347 11040 18592 18603 33985 33985 0.06110064168478857 NVIKHFLV 8 Unmodified _NVIKHFLV_ 0 0 0 L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|116|3|anti-sense L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|116|3|anti-sense L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|116|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.296142578125 2 485.297645 968.580737 NaN NaN NaN NaN NaN NaN NaN 56.869 1 60.17 59.67 60.67 3.3009 0 0 0 0.40604 1 13052 13052 2.5775 0.27475 1 29348 9992 18593 18604 33986 33986 0.09518958410751566 NVIKNKDYV 9 Unmodified _NVIKNKDYV_ 0 0 0 L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|42|3|sense L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|42|3|sense L1MC4a_dup3471|chr6:4812504-4813580:-|1.3842795177472185|0.0067070191088977|7.69|150.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.80517578125 2 546.806031 1091.59751 0.37587 0.00020553 0.27604 0.00015094 0.65192 0.00035647 546.8061210134022 54.66 0.43712 58.161 57.884 58.321 3.5014 33 24 2 0 0 0 0.43982 1 12320 12320 5.7319 0 1 58730 29349 11563 18594 18605 33987 33987 0.05537414506034111 NVILILVP 8 Unmodified _NVILILVP_ 0 0 0 L1MCa_dup6343|chr15:72334335-72335015:-|2.264166070813629|0.2085613120938333|3.44|151.0|50|3|anti-sense L1MCa_dup6343|chr15:72334335-72335015:-|2.264166070813629|0.2085613120938333|3.44|151.0|50|3|anti-sense L1MCa_dup6343|chr15:72334335-72335015:-|2.264166070813629|0.2085613120938333|3.44|151.0|50|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79949951171875 2 440.796946 879.57934 -0.39255 -0.00017304 3.4787 0.0015334 3.0861 0.0013604 440.79954704253936 33.376 0.92241 37.074 36.639 37.562 3.6983 88 61 2 0 0 0 0.82752 1 5993 5993 2.3027 0 1 112320 29350 11837 18595 18606 33988 33988 0.1347332432200119 NVILILVP 8 Unmodified _NVILILVP_ 0 0 0 L1MCa_dup6343|chr15:72334335-72335015:-|2.264166070813629|0.2085613120938333|3.44|151.0|50|3|anti-sense L1MCa_dup6343|chr15:72334335-72335015:-|2.264166070813629|0.2085613120938333|3.44|151.0|50|3|anti-sense L1MCa_dup6343|chr15:72334335-72335015:-|2.264166070813629|0.2085613120938333|3.44|151.0|50|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.2974548339844 2 440.796946 879.57934 0.025064 1.1048E-05 2.3484 0.0010352 2.3734 0.0010462 440.7994219162639 33.623 0.64498 37.143 36.769 37.414 3.5201 97 67 2 0 0 0 0.82752 1 5279 5279 2.8892 0 1 99392 29351 11837 18595 18606 33989 33989 0.1347332432200119 NVILKQTAR 9 Unmodified _NVILKQTAR_ 0 0 0 REV__nc|ENSG00000153707|P23468-7|PTPRD REV__nc|ENSG00000153707|P23468-7|PTPRD MULTI-MSMS UPN47_class_I_Rep_3 4 521.822265625 2 521.822015 1041.62948 0.38555 0.00020119 0.14961 7.8068E-05 0.53516 0.00027926 521.8219768981764 107.63 0.063599 111.17 111.14 111.2 3.5382 12 8 2 0 0 0 0.24936 1 26282 26282 17.113 0.1706 1 1620600 + 29352 19715 18596 18607 33990 33990 0.11032826979840138 NVIMLALTFIN 11 Unmodified _NVIMLALTFIN_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS UPN48_class_I_Rep_2 6 624.8526611328125 2 624.854667 1247.69478 NaN NaN NaN NaN NaN NaN NaN 54.501 1 58.083 57.583 58.583 3.5817 0 0 0 0.38417 1 11526 11526 2.2828 0.95324 1 + 29353 18697 18597 18608 33991 33991 0.0808406039068359 NVIQRRGRAGR 11 Unmodified _NVIQRRGRAGR_ 0 0 0 nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 MULTI-MSMS UPN46_class_I_Rep_3 1 641.8826904296875 2 641.881793 1281.74903 0.74994 0.00048137 0.81967 0.00052613 1.5696 0.0010075 641.8823346764503 93.279 0.22099 93.279 93.164 93.385 0 32 21 2 0 0 0 0.67264 1 22615 22615 1.1933 0 1 380710 29354 2734 18598 18609 33992 33992 0.11942833377111128 NVIQRRGRAGR 11 Unmodified _NVIQRRGRAGR_ 0 0 0 nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 nc|ENSG00000132153|Q7L2E3-3|DHX30 MULTI-MSMS UPN48_class_I_Rep_3 7 641.8832397460938 2 641.881793 1281.74903 0.65212 0.00041859 0.93592 0.00060075 1.588 0.0010193 642.3840874456442 89.422 0.16905 93.251 93.181 93.35 3.8293 32 20 2 0 0 0 0.67264 1 21237 21237 1.1933 0.23107 1 124940 29355 2734 18598 18609 33993 33993 0.11942833377111128 NVIQYNRYE 9 Unmodified _NVIQYNRYE_ 0 0 0 REV__L1MC1_dup5852|chr7:30215170-30217308:+|1.190941174902331|0.0976532505338377|3.61|151.0|31|2|sense REV__L1MC1_dup5852|chr7:30215170-30217308:+|1.190941174902331|0.0976532505338377|3.61|151.0|31|2|sense MSMS UPN47_class_I_Rep_2 3 599.7984008789062 2 599.796195 1197.57784 NaN NaN NaN NaN NaN NaN NaN 48.564 1 51.911 51.411 52.411 3.3465 0 0 0 0.3967 1 10511 10511 1.4819 0.68827 1 + 29356 26585 18599 18610 33994 33994 -0.013049615047066254 NVIRDAVTY 9 Unmodified _NVIRDAVTY_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS UPN46_class_I_Rep_3 1 525.7828369140625 2 525.782556 1049.55056 0.29409 0.00015463 -0.11096 -5.8343E-05 0.18313 9.6285E-05 525.7824928148531 46.794 0.52138 46.794 46.531 47.053 0 64 50 2 0 0 0 0.033731 2 9610 9610;9620 55.503 26.421 1 222120 29357 3798 18600 18611 33995;33996 33995 0.027765549549030766 NVISWKKPRRN 11 Unmodified _NVISWKKPRRN_ 0 0 0 REV__ENSG00000197213|ENST00000586855|ZSCAN5B REV__ENSG00000197213|ENST00000586855|ZSCAN5B MSMS UPN47_class_I_Rep_1 2 466.6078186035156 3 466.608993 1396.80515 NaN NaN NaN NaN NaN NaN NaN 91.248 1 94.953 94.453 95.453 3.7053 0 0 0 0.38417 1 22782 22782 1.2148 0.70888 1 + 29358 21071 18601 18612 33997 33997 0.12262041493931974 NVKEHLSL 8 Unmodified _NVKEHLSL_ 0 0 0 Tigger1_dup1502|chr2:127355362-127356339:-|1.599696680889078|0.0235327932221426|6.09|151.0|53|2|anti-sense Tigger1_dup1502|chr2:127355362-127356339:-|1.599696680889078|0.0235327932221426|6.09|151.0|53|2|anti-sense Tigger1_dup1502|chr2:127355362-127356339:-|1.599696680889078|0.0235327932221426|6.09|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 470.26702880859375 2 470.266542 938.51853 -0.33125 -0.00015578 0.11557 5.4348E-05 -0.21569 -0.00010143 470.26652464323325 23.43 0.70436 26.875 26.558 27.263 3.4447 127 66 3 0 0 0 0.82752 1 2992 2992 5.2307 0 1 156120 29359 33037 18602 18613 33998 33998 0.0468118727176261 NVKITHLNS 9 Unmodified _NVKITHLNS_ 0 0 0 REV__MamRep434_dup24|chr1:27465176-27465545:+|1.016985139643642|0.01111128287226|6.52|151.0|4|1|sense REV__MamRep434_dup24|chr1:27465176-27465545:+|1.016985139643642|0.01111128287226|6.52|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 513.427001953125 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 46.022 1 46.022 45.522 46.522 0 0 0 0 0.39518 1 9402 9402 1.8442 0 1 + 29360 31054 18603 18614 33999 33999 0.055242611917947215 NVKKKKKKKK 10 Unmodified _NVKKKKKKKK_ 0 0 0 REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 628.948486328125 2 628.948082 1255.88161 NaN NaN NaN NaN NaN NaN NaN 29.194 1 32.923 32.423 33.423 3.7286 0 0 0 0.53105 1 4066 4066 0.40072 0 1 + 29361 23294 18604 18615 34000 34000 0.26390465061217583 NVKLQNKYL 9 Unmodified _NVKLQNKYL_ 0 0 0 REV__L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|16|1|sense REV__L1PB1_dup1724|chr2:206033266-206036721:+|1.2929375617594137|0.0213587887213135|5.92|149.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.3294067382812 2 560.329673 1118.64479 0.32683 0.00018313 -1.0603 -0.00059411 -0.73347 -0.00041098 560.3285479408155 53.665 1.0477 57.193 56.811 57.858 3.5278 74 61 2 0 0 0 0.40174 1 11975 11975 7.9102 0 1 128290 + 29362 30362 18605 18616 34001 34001 0.09021693777026485 NVKLRANAL 9 Unmodified _NVKLRANAL_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MSMS UPN47_class_I_Rep_1 2 499.80804443359375 2 499.808908 997.603263 -0.2719 -0.0001359 -0.083173 -4.157E-05 -0.35508 -0.00017747 499.8088422237924 28.804 0.46587 32.571 32.371 32.837 3.7662 55 39 2 0 0 0 0.41259 1 4499 4499 7.2892 0 1 68130 29363 3662 18606 18617 34002 34002 0.10436557808350244 NVKLRANAL 9 Unmodified _NVKLRANAL_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MSMS UPN47_class_I_Rep_2 3 499.8087463378906 2 499.808908 997.603263 -0.17426 -8.7097E-05 -0.01645 -8.2217E-06 -0.19071 -9.5319E-05 499.8088199378177 29.127 0.50882 32.619 32.311 32.819 3.4923 54 39 2 0 0 0 0.41259 1 4649 4649 7.2892 0 1 61140 29364 3662 18606 18617 34003 34003 0.10436557808350244 NVKLRANAL 9 Unmodified _NVKLRANAL_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 499.808908 997.603263 -0.2719 -0.0001359 -0.083173 -4.157E-05 -0.35508 -0.00017747 499.8088422237924 28.804 0.46587 32.571 32.371 32.837 3.7662 -0.031958 -0.0001392 NaN 7.2892 55 39 2 NaN NaN NaN NaN 0 NaN NaN 0 68130 29365 3662 18606 18617 0.10436557808350244 NVKLRANAL 9 Unmodified _NVKLRANAL_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 499.808908 997.603263 -0.17426 -8.7097E-05 -0.01645 -8.2217E-06 -0.19071 -9.5319E-05 499.8088199378177 29.127 0.50882 32.619 32.311 32.819 3.4923 0.016766 -7.2507E-05 NaN 7.2892 54 39 2 NaN NaN NaN NaN 0 NaN NaN 0 61140 29366 3662 18606 18617 0.10436557808350244 NVKLRANAL 9 Unmodified _NVKLRANAL_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 499.808908 997.603263 -0.40928 -0.00020456 0.27341 0.00013665 -0.13587 -6.7911E-05 499.8090306868931 29.294 0.21435 32.618 32.472 32.686 3.3235 0.015192 0.00021724 NaN 7.2892 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 51542 29367 3662 18606 18617 0.10436557808350244 NVKPKPVS 8 Unmodified _NVKPKPVS_ 0 0 0 nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;ENST00000472398.5_1_21:38529111-38558109:+|nuORF nc|ENSG00000182670|P53804-3|TTC3 nc|ENSG00000182670|P53804-3|TTC3 MSMS UPN47_class_I_Rep_2 3 434.77978515625 2 434.766178 867.517802 NaN NaN NaN NaN NaN NaN NaN 40.356 1 43.727 43.227 44.227 3.3712 0 0 0 0.40472 1 8026 8026 4.3292 0.73274 1 29368 4966 18607 18618 34004 34004 0.07874392622716186 NVKQIIQR 8 Unmodified _NVKQIIQR_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN47_class_I_Rep_1 2 499.809814453125 2 499.808908 997.603263 -0.2719 -0.0001359 -0.083173 -4.157E-05 -0.35508 -0.00017747 499.8088422237924 28.804 0.46587 32.571 32.371 32.837 3.7662 55 39 2 0 0 0 0.82752 1 4521 4521 5.2307 0.90143 1 68130 + 29369 19287 18608 18619 34005 34005 0.1043655780838435 NVKQIIQR 8 Unmodified _NVKQIIQR_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN47_class_I_Rep_2 3 499.8082580566406 2 499.808908 997.603263 -0.17426 -8.7097E-05 -0.01645 -8.2217E-06 -0.19071 -9.5319E-05 499.8088199378177 29.127 0.50882 32.619 32.311 32.819 3.4923 54 39 2 0 0 0 0.82752 1 4604 4604 5.2307 0.90143 1 61140 + 29370 19287 18608 18619 34006 34006 0.1043655780838435 NVKQIIQR 8 Unmodified _NVKQIIQR_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN47_class_I_Rep_3 4 499.80889892578125 2 499.808908 997.603263 -0.40928 -0.00020456 0.27341 0.00013665 -0.13587 -6.7911E-05 499.8090306868931 29.294 0.21435 32.618 32.472 32.686 3.3235 30 18 2 0 0 0 0.82752 1 4732 4732 2.3027 0.4585 1 51542 + 29371 19287 18608 18619 34007 34007 0.1043655780838435 NVKRLHWH 8 Unmodified _NVKRLHWH_ 0 0 0 HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|14|1|sense HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|14|1|sense HSMAR2_dup277|chr3:25649829-25651112:-|2.9778578145397923|0.1187737430551203|4.65|151.0|14|1|sense MSMS UPN47_class_I_Rep_1 2 545.3056640625 2 545.306867 1088.59918 NaN NaN NaN NaN NaN NaN NaN 19.989 1 23.601 23.101 24.101 3.6118 0 0 0 0.40738 1 1930 1930 0.79363 0.19213 1 29372 8433 18609 18620 34008 34008 0.05842513105312719 NVKVEWYF 8 Unmodified _NVKVEWYF_ 0 0 0 REV__ENST00000505213.5_2_13:33112769-33112853:-|nuORF REV__ENST00000505213.5_2_13:33112769-33112853:-|nuORF MSMS UPN47_class_I_Rep_2 3 542.7764282226562 2 542.776742 1083.53893 NaN NaN NaN NaN NaN NaN NaN 41.353 1 44.719 44.219 45.219 3.3655 0 0 0 0.40738 1 8326 8326 0.79363 0 1 + 29373 22708 18610 18621 34009 34009 0.0005035793155911961 NVLARRKLN 9 Unmodified _NVLARRKLN_ 0 0 0 REV__L1ME3D_dup3571|chr15:94426174-94427172:-|1.909308713931348|0.0078036454568916|7.93|150.0|15|2|sense REV__L1ME3D_dup3571|chr15:94426174-94427172:-|1.909308713931348|0.0078036454568916|7.93|150.0|15|2|sense MSMS UPN48_class_I_Rep_3 7 542.342529296875 2 542.340907 1082.66726 NaN NaN NaN NaN NaN NaN NaN 69.33 1 72.843 72.343 73.343 3.5128 0 0 0 0.38478 1 15963 15963 4.3292 0 1 + 29374 28144 18611 18622 34010 34010 0.1292333796532148 NVLENSTSL 9 Unmodified _NVLENSTSL_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|70|3|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|70|3|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|70|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.7511291503906 2 488.750921 975.48729 -0.31263 -0.0001528 0.76376 0.00037329 0.45113 0.00022049 488.7510911858416 27.196 0.61699 30.963 30.702 31.319 3.7662 71 47 2 0 0 0 0.47763 1 4065 4065 2.9952 0 1 104410 29375 12496 18612 18623 34011 34011 -0.0014343055297558749 NVLERFRR 8 Unmodified _NVLERFRR_ 0 0 0 REV__HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|24|3|sense REV__HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|24|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.3164672851562 2 545.317432 1088.62031 0.37077 0.00020219 -0.75543 -0.00041195 -0.38466 -0.00020976 545.3166882603265 81.869 0.19157 81.869 81.837 82.029 0 26 19 2 0 0 0 0.82752 1 19394 19394 2.3027 1.5091 1 97972 + 29376 23358 18613 18624 34012 34012 0.07954478414194455 NVLERFRR 8 Unmodified _NVLERFRR_ 0 0 0 REV__HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|24|3|sense REV__HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|24|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.3170776367188 2 545.317432 1088.62031 0.48224 0.00026297 -0.86649 -0.00047251 -0.38425 -0.00020954 545.316824957113 82.994 0.34793 86.67 86.555 86.903 3.6757 54 41 2 0 0 0 0.82752 1 19706 19706 0.69038 0.69038 1 102450 + 29377 23358 18613 18624 34013 34013 0.07954478414194455 NVLERFRR 8 Unmodified _NVLERFRR_ 0 0 0 REV__HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|24|3|sense REV__HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|24|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 545.317432 1088.62031 0.45645 0.00024891 -0.56105 -0.00030595 -0.1046 -5.7041E-05 545.3167883168863 78.484 0.048225 82.019 81.991 82.039 3.5352 0.075207 0.00014148 NaN 2.3027 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 39104 + 29378 23358 18613 18624 0.07954478414194455 NVLFIFKLN 9 Unmodified _NVLFIFKLN_ 0 0 0 REV__L1MB3_dup5380|chr5:175702867-175703899:+|1.1926858031967895|0.0919669268611614|3.7|148.0|71|2|anti-sense REV__L1MB3_dup5380|chr5:175702867-175703899:+|1.1926858031967895|0.0919669268611614|3.7|148.0|71|2|anti-sense MSMS UPN48_class_I_Rep_2 6 554.3322143554688 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 79.231 1 82.864 82.364 83.364 3.6331 0 0 0 0.4007 1 18815 18815 0.52476 0 1 + 29379 25895 18614 18625 34014 34014 0.09975783270783722 NVLINTFS 8 Unmodified _NVLINTFS_ 0 0 0 nc|ENSG00000142733|O95382-2|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 nc|ENSG00000142733|O95382-2|MAP3K6 MULTI-SECPEP UPN46_class_I_Rep_3 1 453.7509460449219 2 454.247818 906.481082 0.12133 5.5114E-05 -0.031761 -1.4427E-05 0.089569 4.0687E-05 454.2476419302902 60.687 0.17982 60.687 60.573 60.753 0 28 20 2 0 0 0 0.72333 1 13468 13468 13.906 5.9959 1 90505 29380 3262 18615 18626 34015 34015 0.02410096006144613 NVLIQLIR 8 Unmodified _NVLIQLIR_ 0 0 0 REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF MSMS UPN47_class_I_Rep_3 4 484.6460876464844 2 484.816202 967.617851 NaN NaN NaN NaN NaN NaN NaN 87.419 1 90.807 90.307 91.307 3.3873 0 0 0 0.40738 1 21904 21904 0.79363 0 1 + 29381 20192 18616 18627 34016 34016 0.1327462995652695 NVLKSLLS 8 Unmodified _NVLKSLLS_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS UPN47_class_I_Rep_1 2 437.2744445800781 2 437.273835 872.533118 NaN NaN NaN NaN NaN NaN NaN 98.347 1 102.13 101.63 102.63 3.7861 0 0 0 0.40746 1 24348 24348 0.69038 0 1 29382 4463 18617 18628 34017 34017 0.09175259419919257 NVLKSLLS 8 Unmodified _NVLKSLLS_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS UPN48_class_I_Rep_1 5 437.27447509765625 2 437.273835 872.533118 NaN NaN NaN NaN NaN NaN NaN 98.135 1 101.74 101.24 102.24 3.6065 0 0 0 0.40746 1 23676 23676 0.69038 0 1 29383 4463 18617 18628 34018 34018 0.09175259419919257 NVLNIILNY 9 Unmodified _NVLNIILNY_ 0 0 0 L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|20|3|sense L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|20|3|sense L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 538.3080444335938 2 538.310949 1074.60735 NaN NaN NaN NaN NaN NaN NaN 85.401 1 85.401 84.901 85.901 0 0 0 0 0.39518 1 20372 20372 1.8442 0 1 29384 13309 18618 18629 34019 34019 0.07302602511435907 NVLQFHPCCH 10 Unmodified _NVLQFHPCCH_ 0 0 0 L1MA5A_dup3076|chr17:18012698-18013919:+|1.9279955282239367|0.4515334057507627|2.09|151.0|56|1|anti-sense L1MA5A_dup3076|chr17:18012698-18013919:+|1.9279955282239367|0.4515334057507627|2.09|151.0|56|1|anti-sense L1MA5A_dup3076|chr17:18012698-18013919:+|1.9279955282239367|0.4515334057507627|2.09|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_1 5 599.2677612304688 2 599.268235 1196.52192 NaN NaN NaN NaN NaN NaN NaN 31.07 1 34.604 34.104 35.104 3.5342 0 0 0 0.53105 1 4548 4548 1.4819 0.28856 1 29385 9944 18619 18630 34020 34020 -0.0684820921753726 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MULTI-MSMS UPN46_class_I_Rep_3 1 589.8453979492188 2 589.343646 1176.67274 0.54452 0.00032091 -1.3268 -0.00078196 -0.78231 -0.00046105 589.3425813915649 86.166 0.18178 86.166 86.107 86.289 0 30 16 3 0 0 0 0.56333 1 20611 20611 1.4819 0 1 195140 + 29386 17952 18620 18631 34021 34021 0.09147016757151505 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3440551757812 2 589.343646 1176.67274 0.54411 0.00032067 -0.79103 -0.00046619 -0.24693 -0.00014552 589.3431259489705 90.694 0.13078 90.694 90.681 90.812 0 20 14 2 0 0 0 0.56333 1 21901 21901 1.4819 0 1 295440 + 29387 17952 18620 18631 34022 34022 0.09147016757151505 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MSMS UPN47_class_I_Rep_1 2 589.343505859375 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 83.849 1 87.415 86.915 87.915 3.5655 0 0 0 0.53105 1 20977 20977 1.4819 0 1 + 29388 17952 18620 18631 34023 34023 0.09147016757151505 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MSMS UPN47_class_I_Rep_1 2 589.3443603515625 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 84.603 1 88.169 87.669 88.669 3.5655 0 0 0 0.53105 1 21166 21166 1.4819 0 1 + 29389 17952 18620 18631 34024 34024 0.09147016757151505 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MULTI-MSMS UPN47_class_I_Rep_2 3 589.3441162109375 2 589.343646 1176.67274 0.54083 0.00031873 -1.2825 -0.00075582 -0.74165 -0.00043709 589.3427411325795 84.168 0.35182 87.591 87.52 87.872 3.4232 68 45 2 0 0 0 0.56333 1 20995 20995 1.4819 0.15237 1 92512 + 29390 17952 18620 18631 34025 34025 0.09147016757151505 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MULTI-MSMS UPN47_class_I_Rep_2 3 589.3435668945312 2 589.343646 1176.67274 0.56626 0.00033372 -1.0825 -0.00063794 -0.5162 -0.00030422 589.3428030160536 86.855 0.33553 90.296 90.282 90.617 3.4407 56 44 2 0 0 0 0.56078 1 21600 21600 3.2813 0 1 109600 + 29391 17952 18620 18631 34026 34026 0.09147016757151505 NVLQRHNLAL 10 Unmodified _NVLQRHNLAL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 REV__nc|ENSG00000085382|Q8IYU2-2|HACE1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 589.343646 1176.67274 0.47959 0.00028264 -1.0886 -0.00064156 -0.60902 -0.00035892 589.3432038519276 82.917 0.044678 86.254 86.228 86.273 3.337 0.044033 0.00022927 NaN 1.4819 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 42996 + 29392 17952 18620 18631 0.09147016757151505 NVLQSDHF 8 Unmodified _NVLQSDHF_ 0 0 0 nc|ENSG00000173226|Q15051-3|IQCB1;ENSG00000173226|ENST00000310864|IQCB1;ENSG00000173226.17,IQCB1,chr3,-,I8.1,121797228,121799195|42|9.7|2|intron;nc|ENSG00000173226|Q15051-2|IQCB1 nc|ENSG00000173226|Q15051-3|IQCB1 nc|ENSG00000173226|Q15051-3|IQCB1 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2326354980469 2 480.232699 958.450845 -0.22271 -0.00010695 0.32363 0.00015542 0.10092 4.8467E-05 480.23276433026814 32.213 0.61025 35.668 35.447 36.057 3.4547 82 44 2 0 0 0 0.82752 1 5504 5504 4.756 0.42677 1 128430 29393 4618 18621 18632 34027 34027 -0.030042626590443433 NVLQVLYLIH 10 Unmodified _NVLQVLYLIH_ 0 0 0 REV__MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|84|2|anti-sense REV__MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 606.3609008789062 2 606.360973 1210.70739 0.51 0.00030924 1.1442 0.00069377 1.6541 0.001003 606.3610174317315 108.67 0.68752 112.21 112.08 112.77 3.5382 232 80 4 0 0 0 0.56333 1 26788 26788 1.4819 0 1 58762000 + 29394 31533 18622 18633 34028 34028 0.11046839845243994 NVLTRISFL 9 Unmodified _NVLTRISFL_ 0 0 0 L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|125|3|anti-sense L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|125|3|anti-sense L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|125|3|anti-sense MSMS UPN47_class_I_Rep_2 3 531.817138671875 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 80.683 1 84.052 83.552 84.552 3.3694 0 0 0 0.39518 1 20087 20087 1.8442 0 1 29395 11548 18623 18634 34029 34029 0.09498308748334239 NVLVGGIKM 9 Unmodified _NVLVGGIKM_ 0 0 0 REV__nc|ENSG00000159267|P50747|HLCS REV__nc|ENSG00000159267|P50747|HLCS MSMS UPN46_class_I_Rep_3 1 465.7772521972656 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 76.756 1 76.756 76.256 77.256 0 0 0 0 0.39518 1 17922 17922 1.8442 0 1 + 29396 19864 18624 18635 34030 34030 0.06923605922111165 NVLVLLPL 8 Unmodified _NVLVLLPL_ 0 0 0 REV__ENSG00000087301|ENST00000281741|TXNDC16 REV__ENSG00000087301|ENST00000281741|TXNDC16 MULTI-MSMS UPN47_class_I_Rep_3 4 441.2979431152344 2 440.796946 879.57934 -0.59016 -0.00026014 3.2077 0.001414 2.6176 0.0011538 440.79960928474264 44.637 1.5168 47.882 47.076 48.593 3.2441 138 93 2 0 0 0 0.82752 1 9505 9505 0.79363 0 1 103350 + 29397 17977 18625 18636 34031 34031 0.1347332432201256 NVNLIGQIYRG 11 Unmodified _NVNLIGQIYRG_ 0 0 0 REV__nc|ENSG00000166938|Q8TF46-3|DIS3L REV__nc|ENSG00000166938|Q8TF46-3|DIS3L MSMS UPN46_class_I_Rep_3 1 623.8500366210938 2 623.848761 1245.68297 NaN NaN NaN NaN NaN NaN NaN 47.096 1 47.096 46.596 47.596 0 0 0 0 0.38417 1 9712 9712 1.1933 0.66858 1 + 29398 23056 18626 18637 34032 34032 0.0699557969169291 NVNLLILL 8 Unmodified _NVNLLILL_ 0 0 0 REV__L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|23|2|sense REV__L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|23|2|sense MSMS UPN48_class_I_Rep_3 7 456.30108642578125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 48.367 1 52.001 51.501 52.501 3.6339 0 0 0 0.40738 1 9594 9594 0.79363 0 1 + 29399 25687 18627 18638 34033 34033 0.12628422833677178 NVNLTKTQL 9 Unmodified _NVNLTKTQL_ 0 0 0 nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.R2604Kfs*18|1|0.08|ENSG00000163092|chr2:167249723-167249724|-/A|frameshift_variant nc|ENSG00000163092|A4UGR9-2|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS UPN47_class_I_Rep_2 3 515.7990112304688 2 515.798206 1029.58186 NaN NaN NaN NaN NaN NaN NaN 59.793 1 63.066 62.566 63.566 3.2731 0 0 0 0.38916 1 13944 13944 3.2813 0 1 29400 3981 18628 18639 34034 34034 0.06825127989009161 NVNPCGDDAYC 11 Unmodified _NVNPCGDDAYC_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.A4192Gfs*13|1|0.08|ENSG00000168702|chr2:140322028-140322029|-/C|frameshift_variant ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS UPN47_class_I_Rep_3 4 586.212158203125 2 585.713156 1169.41176 0.50706 0.00029699 -3.8427 -0.0022507 -3.3357 -0.0019537 586.2111291209428 118.76 0.048347 122.18 122.15 122.2 3.4238 4 2 2 0 0 0 0.67113 1 29307 29307 1.3295 0.63916 1 23492 29401 4386 18629 18640 34035 34035 -0.16617099067207164 NVPEGATVAFN 11 Unmodified _NVPEGATVAFN_ 0 0 0 nc|ENSG00000211785|A0A0B4J245|TRAV12-1 nc|ENSG00000211785|A0A0B4J245|TRAV12-1 nc|ENSG00000211785|A0A0B4J245|TRAV12-1 MULTI-SECPEP UPN46_class_I_Rep_3 1 560.3116455078125 2 559.77747 1117.54039 0.38301 0.0002144 0.39023 0.00021844 0.77324 0.00043284 559.7773654111852 49.622 0.092564 49.622 49.582 49.674 0 15 10 2 0 0 0 22.551 1 10441 10441 7.1017 0 1 149620 29402 16815 18630 18641 34036 34036 -0.013680527703400003 NVPQFIYPF 9 Unmodified _NVPQFIYPF_ 0 0 0 L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|62|3|anti-sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|62|3|anti-sense L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|62|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.7927856445312 2 562.792392 1123.57023 0.046343 2.6082E-05 -0.65508 -0.00036868 -0.60874 -0.00034259 562.7921567763068 43.037 0.41246 46.724 46.596 47.009 3.6875 45 28 2 0 0 0 0.46434 1 8830 8830 4.3292 0 1 68092 29403 11089 18631 18642 34037 34037 0.013389309656758996 NVQIQHRNT 9 Unmodified _NVQIQHRNT_ 0 0 0 L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|6|1|sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|6|1|sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 555.2939453125 2 555.294153 1108.57375 -0.10479 -5.8191E-05 -0.80334 -0.00044609 -0.90813 -0.00050428 555.2936110829696 12.808 0.12766 16.258 16.19 16.317 3.45 18 11 2 0 0 0 0.46869 1 160 160 3.9444 0 1 35025 29404 8682 18632 18643 34038 34038 0.023809937922123936 NVQIQHRNT 9 Unmodified _NVQIQHRNT_ 0 0 0 L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|6|1|sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|6|1|sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|6|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 555.294153 1108.57375 0.048601 2.6988E-05 -1.2173 -0.00067599 -1.1687 -0.000649 555.2935577575337 12.85 0.15784 16.238 16.143 16.301 3.388 -0.010202 -0.0001395 NaN 3.9444 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 50804 29405 8682 18632 18643 0.023809937922123936 NVRIHPPP 8 Unmodified _NVRIHPPP_ 0 0 0 REV__nc|ENSG00000127329|P23467-4|PTPRB REV__nc|ENSG00000127329|P23467-4|PTPRB MULTI-MSMS UPN46_class_I_Rep_3 1 465.2704162597656 2 465.269419 928.524284 0.22727 0.00010574 -0.87279 -0.00040608 -0.64552 -0.00030034 465.27038897370454 103.78 0.16149 103.78 103.66 103.82 0 47 15 4 0 0 0 0.82752 1 25302 25302 0.79363 0 1 2626100 + 29406 18873 18633 18644 34039 34039 0.05716330574091444 NVRLSKSIHLV 11 Unmodified _NVRLSKSIHLV_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|17|1|sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|17|1|sense MSMS UPN47_class_I_Rep_3 4 633.3861694335938 2 633.388054 1264.76155 NaN NaN NaN NaN NaN NaN NaN 46.977 1 50.221 49.721 50.721 3.2439 0 0 0 0.38417 1 10098 10098 0.35063 0 1 + 29407 25500 18634 18645 34040 34040 0.13976431996798055 NVRPKTKK 8 Unmodified _NVRPKTKK_ 0 0 0 L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense MSMS UPN47_class_I_Rep_2 3 485.8115539550781 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 106.96 1 110.49 109.99 110.99 3.5345 0 0 0 0.40746 1 25884 25884 0.69038 0 1 29408 14432 18635 18646 34041 34041 0.12232861670997863 NVRPKTKK 8 Unmodified _NVRPKTKK_ 0 0 0 L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|76|2|sense MSMS UPN47_class_I_Rep_3 4 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 119.41 1 122.83 122.33 123.33 3.4157 0 0 0 0.40746 1 29490 29490 0.69038 0.69038 1 29409 14432 18635 18646 34042 34042 0.12232861670997863 NVRRFIRPDKL 11 Unmodified _NVRRFIRPDKL_ 0 0 0 REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense MSMS UPN46_class_I_Rep_3 1 471.9518127441406 3 471.95276 1412.83645 NaN NaN NaN NaN NaN NaN NaN 102.93 1 102.93 102.43 103.43 0 0 0 0 0.38417 1 25117 25117 1.2148 0 1 + 29410 32430 18636 18647 34043 34043 0.1465461452803538 NVRRFIRPDKL 11 Unmodified _NVRRFIRPDKL_ 0 0 0 REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.287109375 3 471.95276 1412.83645 0.27316 0.00012892 -1.1792 -0.00055654 -0.90607 -0.00042762 471.9518102673947 99.052 0.080292 102.54 102.49 102.57 3.4897 15 11 2 0 0 0 0.6724 1 24268 24268 1.2148 0.10508 1 99735 + 29411 32430 18636 18647 34044 34044 0.1465461452803538 NVRRFIRPDKL 11 Unmodified _NVRRFIRPDKL_ 0 0 0 REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.9521484375 3 471.95276 1412.83645 0.21143 9.9785E-05 -1.5769 -0.00074421 -1.3654 -0.00064443 471.9518006819334 98.648 0.32882 102.42 102.35 102.68 3.7707 80 45 2 0 0 0 0.6724 1 23424 23424 1.2148 0.10508 1 299720 + 29412 32430 18636 18647 34045 34045 0.1465461452803538 NVRRFIRPDKL 11 Unmodified _NVRRFIRPDKL_ 0 0 0 REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense REV__Tigger1_dup3850|chr5:14493252-14494616:+|2.6216659767315704|0.4569135526348808|2.52|150.0|47|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 471.95276 1412.83645 0.24451 0.0001154 -1.5353 -0.0007246 -1.2908 -0.0006092 471.9514799188111 102.46 0.044724 102.46 102.44 102.48 0 0.012385 0.00021943 NaN 1.2148 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 32141 + 29413 32430 18636 18647 0.1465461452803538 NVSTPKLIIV 10 Unmodified _NVSTPKLIIV_ 0 0 0 REV__L1PA7_dup2384|chr3:101735396-101739625:+|3.0791717805806265|0.0454275004220466|6.08|151.0|230|3|anti-sense REV__L1PA7_dup2384|chr3:101735396-101739625:+|3.0791717805806265|0.0454275004220466|6.08|151.0|230|3|anti-sense MSMS UPN48_class_I_Rep_1 5 542.37109375 2 542.342249 1082.66995 NaN NaN NaN NaN NaN NaN NaN 69.728 1 73.183 72.683 73.683 3.4548 0 0 0 0.53105 1 16196 16196 5.2969 0.96765 1 + 29414 30042 18637 18648 34046 34046 0.1319174857960661 NVTENLQAY 9 Unmodified _NVTENLQAY_ 0 0 0 ENST00000368895.2_1_10:124641150-124648192:+|nuORF ENST00000368895.2_1_10:124641150-124648192:+|nuORF ENST00000368895.2_1_10:124641150-124648192:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.2548828125 2 526.256371 1050.49819 -0.11898 -6.2616E-05 -0.068981 -3.6302E-05 -0.18796 -9.8917E-05 526.2563806318277 31.348 0.43787 35.077 34.899 35.337 3.7293 41 30 2 0 0 0 0.31407 2 5236 5210;5236 13.042 0 1 70526 29415 6371 18638 18649 34047;34048 34048 -0.025040281787141794 NVTENLQAY 9 Unmodified _NVTENLQAY_ 0 0 0 ENST00000368895.2_1_10:124641150-124648192:+|nuORF ENST00000368895.2_1_10:124641150-124648192:+|nuORF ENST00000368895.2_1_10:124641150-124648192:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 526.2562866210938 2 526.256371 1050.49819 -0.28035 -0.00014753 -0.011019 -5.7986E-06 -0.29137 -0.00015333 526.2562213255297 31.547 0.52051 35.016 34.762 35.282 3.4691 47 40 2 0 0 0 0.31407 1 5352 5352 13.042 0 1 66320 29416 6371 18638 18649 34049 34049 -0.025040281787141794 NVTENLQAY 9 Unmodified _NVTENLQAY_ 0 0 0 ENST00000368895.2_1_10:124641150-124648192:+|nuORF ENST00000368895.2_1_10:124641150-124648192:+|nuORF ENST00000368895.2_1_10:124641150-124648192:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 526.256103515625 2 526.256371 1050.49819 -0.25029 -0.00013171 0.13894 7.3118E-05 -0.11135 -5.8597E-05 526.2563414886669 31.662 0.36699 34.961 34.712 35.079 3.2991 47 31 2 0 0 0 0.36392 2 5450 5390;5450 10.074 0 1 63229 29417 6371 18638 18649 34050;34051 34051 -0.025040281787141794 NVVWSYIKY 9 Unmodified _NVVWSYIKY_ 0 0 0 L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|38|3|sense L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|38|3|sense L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|38|3|sense MSMS UPN47_class_I_Rep_1 2 586.32763671875 2 586.310949 1170.60735 NaN NaN NaN NaN NaN NaN NaN 33.326 1 37.024 36.524 37.524 3.6983 0 0 0 0.39518 1 5854 5854 1.8442 0.36234 1 29418 13092 18639 18650 34052 34052 0.02886602511421188 NVYHFHLM 8 Unmodified _NVYHFHLM_ 0 0 0 ENST00000588396.1_1_18:59557720-59560115:-|nuORF;ENST00000312828.3_1_18:59483799-59560115:-|nuORF ENST00000588396.1_1_18:59557720-59560115:-|nuORF ENST00000588396.1_1_18:59557720-59560115:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 530.7540283203125 2 530.755287 1059.49602 -0.26905 -0.0001428 -0.82259 -0.00043659 -1.0916 -0.00057939 530.7544517053888 14.115 0.40099 14.115 13.997 14.398 0 75 46 3 0 0 0 0.82752 1 577 577 2.8892 0.31174 1 39862 29419 6113 18640 18651 34053 34053 -0.031347353975206715 NVYLLGLLSYM 11 Unmodified _NVYLLGLLSYM_ 0 0 0 Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|168|3|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|168|3|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|168|3|anti-sense MSMS UPN48_class_I_Rep_2 6 643.1482543945312 2 643.346674 1284.6788 NaN NaN NaN NaN NaN NaN NaN 45.547 1 49.305 48.805 49.805 3.7579 0 0 0 0.38417 1 8805 8805 1.3295 0 1 29420 33077 18641 18652 34054 34054 0.04784354153798631 NVYRRMYVL 9 Unmodified _NVYRRMYVL_ 0 0 0 MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|20|3|sense MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|20|3|sense MER2_dup59|chr1:26718498-26719046:-|3.101287155345589|0.0201986087080638|7.26|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 607.3286743164062 2 607.32915 1212.64375 0.47402 0.00028789 0.3867 0.00023485 0.86072 0.00052274 607.3293206096004 47.67 0.83894 51.304 51.069 51.908 3.6339 113 61 2 0 0 0 0.48007 1 9481 9481 0.52476 0 1 364030 29421 15826 18642 18653 34055 34055 0.045931561364795925 NVYWLNHMR 9 Unmodified _NVYWLNHMR_ 0 0 0 REV__L1ME1_dup18936|chr10:839438-840260:+|1.8200798743098865|0.014909945781729|6.93|150.0|20|2|sense REV__L1ME1_dup18936|chr10:839438-840260:+|1.8200798743098865|0.014909945781729|6.93|150.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 616.8043212890625 2 616.8033 1231.59205 NaN NaN NaN NaN NaN NaN NaN 27.638 1 31.393 30.893 31.893 3.7555 0 0 0 0.39518 1 3653 3653 1.8442 0.36234 1 + 29422 27644 18643 18654 34056 34056 -0.014485875574337115 NWHQTWMK 8 Unmodified _NWHQTWMK_ 0 0 0 REV__MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|2|1|sense REV__MSTA-int_dup507|chr3:111661338-111662946:-|2.456163866029996|0.1879250255610165|3.71|150.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 565.7642822265625 2 565.763643 1129.51273 NaN NaN NaN NaN NaN NaN NaN 36.285 1 39.972 39.472 40.472 3.6877 0 0 0 0.40625 1 6080 6080 2.3027 0.4585 1 + 29423 31877 18644 18655 34057 34057 -0.0468423451156923 NWIFHLTTKK 10 Unmodified _NWIFHLTTKK_ 0 0 0 REV__L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|44|2|sense REV__L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|44|2|sense MSMS UPN46_class_I_Rep_3 1 644.3662719726562 2 644.364047 1286.71354 NaN NaN NaN NaN NaN NaN NaN 67.105 1 67.105 66.605 67.605 0 0 0 0 0.53105 1 15260 15260 1.4819 0.28856 1 + 29424 29992 18645 18656 34058 34058 0.08165358076712437 NWILVCLV 8 Unmodified _NWILVCLV_ 0 0 0 REV__L1ME4b_dup20760|chr20:32701603-32702102:+|1.20910028558177|0.2556177977922786|2.24|151.0|12|2|sense REV__L1ME4b_dup20760|chr20:32701603-32702102:+|1.20910028558177|0.2556177977922786|2.24|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 480.273193359375 2 480.272781 958.531009 NaN NaN NaN NaN NaN NaN NaN 13.192 1 16.705 16.205 17.205 3.5133 0 0 0 0.40738 1 201 201 0.79363 0 1 + 29425 28281 18646 18657 34059 34059 0.050085074104572413 NWKGIVVH 8 Unmodified _NWKGIVVH_ 0 0 0 L1ME2z_dup4122|chr10:74710225-74711121:+|1.273224775040178|0.1224714132970458|3.38|151.0|19|2|sense L1ME2z_dup4122|chr10:74710225-74711121:+|1.273224775040178|0.1224714132970458|3.38|151.0|19|2|sense L1ME2z_dup4122|chr10:74710225-74711121:+|1.273224775040178|0.1224714132970458|3.38|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 476.8000183105469 2 476.771794 951.529036 NaN NaN NaN NaN NaN NaN NaN 117.19 1 117.19 116.69 117.69 0 0 0 0 0.40604 1 29039 29039 2.5775 0 1 29426 12566 18647 18658 34060 34060 0.05133214716840939 NWKMRFKK 8 Unmodified _NWKMRFKK_ 0 0 0 L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|51|3|sense L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|51|3|sense L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|51|3|sense MSMS UPN48_class_I_Rep_3 7 569.3208618164062 2 569.321128 1136.6277 NaN NaN NaN NaN NaN NaN NaN 112.34 1 116 115.5 116.5 3.6614 0 0 0 0.40746 1 26689 26689 0.69038 0 1 29427 12486 18648 18659 34061 34061 0.06485494690241467 NWKNKQRL 8 Unmodified _NWKNKQRL_ 0 0 0 REV__AluSx1_dup42899|chr7:67279272-67279569:+|1.266578924411678|0.0540072624533833|4.55|151.0|9|2|sense REV__AluSx1_dup42899|chr7:67279272-67279569:+|1.266578924411678|0.0540072624533833|4.55|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 543.8115844726562 2 543.811982 1085.60941 NaN NaN NaN NaN NaN NaN NaN 35.558 1 39.225 38.725 39.725 3.6667 0 0 0 0.39819 1 5781 5781 8.5933 0 1 + 29428 17179 18649 18660 34062 34062 0.07003076039904954 NWKQFIQL 8 Unmodified _NWKQFIQL_ 0 0 0 REV__L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|46|1|anti-sense REV__L1MD2_dup4132|chr7:38369680-38370808:-|1.8262267928385607|0.087880828048433|4.38|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_2 3 538.8016967773438 2 538.798009 1075.58147 NaN NaN NaN NaN NaN NaN NaN 81.639 1 85.023 84.523 85.523 3.3839 0 0 0 0.37681 1 20336 20336 15.847 2.3393 1 + 29429 27404 18650 18661 34063 34063 0.046697530598066805 NWKVRRFV 8 Unmodified _NWKVRRFV_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MSMS UPN47_class_I_Rep_2 3 552.8236694335938 2 552.824892 1103.63523 NaN NaN NaN NaN NaN NaN NaN 73.407 1 76.712 76.212 77.212 3.3048 0 0 0 0.40746 1 18046 18046 0.69038 0 1 29430 1515 18651 18662 34064 34064 0.08755970282186354 NWLHTNWSLP 10 Unmodified _NWLHTNWSLP_ 0 0 0 REV__MLT1G3_dup1026|chr5:180800269-180800826:-|1.077704553462141|0.3455164627601335|1.64|151.0|4|1|sense REV__MLT1G3_dup1026|chr5:180800269-180800826:-|1.077704553462141|0.3455164627601335|1.64|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 634.3148803710938 2 634.314554 1266.61456 NaN NaN NaN NaN NaN NaN NaN 62.05 1 65.561 65.061 66.061 3.5104 0 0 0 0.53105 1 13763 13763 1.3295 0 1 + 29431 31729 18652 18663 34065 34065 -0.008086648881544534 NWLTPRFP 8 Unmodified _NWLTPRFP_ 0 0 0 L1M4b_dup1412|chr5:139002644-139003603:-|2.9695275597376694|0.0744914765189898|5.32|151.0|56|3|anti-sense L1M4b_dup1412|chr5:139002644-139003603:-|2.9695275597376694|0.0744914765189898|5.32|151.0|56|3|anti-sense L1M4b_dup1412|chr5:139002644-139003603:-|2.9695275597376694|0.0744914765189898|5.32|151.0|56|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.547607421875 2 515.777077 1029.5396 NaN NaN NaN NaN NaN NaN NaN 30.651 1 34.286 33.786 34.786 3.6351 0 0 0 0.40643 1 4516 4516 2.0598 0 1 29432 8992 18653 18664 34066 34066 0.026011973712684267 NWMICHWH 8 Unmodified _NWMICHWH_ 0 0 0 REV__L1MB4_dup6599|chr13:32423563-32423938:+|1.6484621879342087|0.1602153641949459|3.36|151.0|22|2|anti-sense REV__L1MB4_dup6599|chr13:32423563-32423938:+|1.6484621879342087|0.1602153641949459|3.36|151.0|22|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.2734375 2 563.739114 1125.46367 0.43253 0.00024383 -3.6442 -0.0020544 -3.2117 -0.0018106 564.237809200108 114.34 0.024345 117.97 117.95 117.98 3.6301 4 2 2 0 0 0 0.82752 1 27796 27796 0.79363 0.10326 1 23522 + 29433 26007 18654 18665 34067 34067 -0.09403846072177657 NWNDYRYQA 9 Unmodified _NWNDYRYQA_ 0 0 0 ENST00000554784.2_1_12:56775935-56776031:-|nuORF ENST00000554784.2_1_12:56775935-56776031:-|nuORF ENST00000554784.2_1_12:56775935-56776031:-|nuORF MSMS UPN48_class_I_Rep_3 7 615.2677612304688 2 615.270344 1228.52613 NaN NaN NaN NaN NaN NaN NaN 41.047 1 44.693 44.193 45.193 3.6458 0 0 0 0.39598 1 7370 7370 1.6526 0.17072 1 29434 7424 18655 18666 34068 34068 -0.07898705198613243 NWNGIIIY 8 Unmodified _NWNGIIIY_ 0 0 0 L1M5_dup21567|chr6:143954668-143954915:+|1.2886247551774044|0.1450305327861062|3.15|150.0|3|1|sense L1M5_dup21567|chr6:143954668-143954915:+|1.2886247551774044|0.1450305327861062|3.15|150.0|3|1|sense L1M5_dup21567|chr6:143954668-143954915:+|1.2886247551774044|0.1450305327861062|3.15|150.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 496.7560729980469 2 496.763635 991.512717 NaN NaN NaN NaN NaN NaN NaN 58.153 1 61.32 60.82 61.82 3.1668 0 0 0 0.38221 1 13491 13491 14.582 0 1 29435 9111 18656 18667 34069 34069 0.016620887600993228 NWPTYPIYVM 10 Unmodified _NWPTYPIYVM_ 0 0 0 REV__L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|36|2|sense REV__L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 642.3087158203125 2 642.310092 1282.60563 NaN NaN NaN NaN NaN NaN NaN 94.581 1 98.332 97.832 98.832 3.7508 0 0 0 0.53105 1 23495 23495 1.4819 0.15237 1 + 29436 29384 18657 18668 34070 34070 -0.024367745688550713 NWQGRHTQKY 10 Unmodified _NWQGRHTQKY_ 0 0 0 REV__L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|25|1|sense REV__L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 439.8858947753906 3 439.886415 1316.63742 -1.0406 -0.00045775 0.13592 5.979E-05 -0.90469 -0.00039796 439.88645092672306 25.914 1.6682 29.262 28.884 30.552 3.3478 422 150 4 0 0 0 0.56296 1 3626 3626 1.7423 1.7423 1 1129600 + 29437 24962 18658 18669 34071 34071 -0.00823645770674375 NWQNIHRY 8 Unmodified _NWQNIHRY_ 0 0 0 REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|24|2|sense REV__L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.2788696289062 2 565.778139 1129.54173 0.045214 2.5581E-05 -1.0071 -0.00056978 -0.96186 -0.0005442 565.7775391898543 39.483 0.69242 42.862 42.629 43.321 3.3785 111 43 3 0 0 0 0.82752 1 7872 7872 5.2307 0.90143 1 214010 + 29438 26314 18659 18670 34072 34072 -0.017863738909227322 NWQRFKKK 8 Unmodified _NWQRFKKK_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|137|3|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|137|3|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|137|3|sense MSMS UPN47_class_I_Rep_1 2 567.8319091796875 2 567.830175 1133.6458 NaN NaN NaN NaN NaN NaN NaN 86.222 1 89.838 89.338 90.338 3.6153 0 0 0 0.40625 1 21535 21535 2.3027 0.4585 1 29439 13585 18660 18671 34073 34073 0.08431952936598464 NWRNYDFK 8 Unmodified _NWRNYDFK_ 0 0 0 HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|255|3|anti-sense HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|255|3|anti-sense HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|255|3|anti-sense MSMS UPN47_class_I_Rep_2 3 571.760986328125 2 571.772522 1141.53049 NaN NaN NaN NaN NaN NaN NaN 34.723 1 38.148 37.648 38.648 3.4253 0 0 0 0.40604 1 6317 6317 2.5775 0 1 29440 8361 18661 18672 34074 34074 -0.03461195985073573 NWRVKLQY 8 Unmodified _NWRVKLQY_ 0 0 0 REV__Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|68|3|anti-sense REV__Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|68|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.8089599609375 2 553.808908 1105.60326 NaN NaN NaN NaN NaN NaN NaN 55.803 1 58.981 58.481 59.481 3.1779 0 0 0 0.40404 1 12781 12781 5.2307 0.90143 1 + 29441 17407 18662 18673 34075 34075 0.054685578083763176 NWSWISECS 9 Unmodified _NWSWISECS_ 0 0 0 REV__L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|188|1|anti-sense REV__L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|188|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2297973632812 2 556.229299 1110.44404 0.4162 0.0002315 0.10111 5.6238E-05 0.51731 0.00028774 556.2292942887451 76.664 0.71147 80.079 79.778 80.489 3.4149 115 66 2 0 0 0 0.49026 1 18943 18943 1.6526 0 1 318610 + 29442 29632 18663 18674 34076 34076 -0.10675943601927429 NWSWISECS 9 Unmodified _NWSWISECS_ 0 0 0 REV__L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|188|1|anti-sense REV__L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|188|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.2289428710938 2 556.229299 1110.44404 0.46077 0.00025629 0.25742 0.00014318 0.71819 0.00039948 556.2293500792522 76.865 0.68946 80.134 79.817 80.506 3.269 165 73 4 0 0 0 0.49026 1 19067 19067 1.6526 0.85899 1 256060 + 29443 29632 18663 18674 34077 34077 -0.10675943601927429 NWTLLEKRR 9 Unmodified _NWTLLEKRR_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MSMS UPN46_class_I_Rep_3 1 405.9018249511719 3 405.903406 1214.68839 NaN NaN NaN NaN NaN NaN NaN 21.325 1 21.325 20.825 21.825 0 0 0 0 0.39841 1 2367 2367 1.0715 0 1 29444 4059 18664 18675 34078 34078 0.08963303274163081 NWYLRCYV 8 Unmodified _NWYLRCYV_ 0 0 0 REV__L1M1_dup283|chr1:107926375-107929137:+|2.0018239845247385|0.0123661827990278|7.34|151.0|156|3|anti-sense REV__L1M1_dup283|chr1:107926375-107929137:+|2.0018239845247385|0.0123661827990278|7.34|151.0|156|3|anti-sense MSMS UPN47_class_I_Rep_1 2 558.7692260742188 2 558.768394 1115.52224 NaN NaN NaN NaN NaN NaN NaN 57.759 1 61.196 60.696 61.696 3.437 0 0 0 0.40604 1 13286 13286 2.5775 0 1 + 29445 24060 18665 18676 34079 34079 -0.0309046622603546 NWYSFLYMFIR 11 Unmodified _NWYSFLYMFIR_ 0 0 0 L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|98|1|anti-sense L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|98|1|anti-sense L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|98|1|anti-sense MSMS UPN46_class_I_Rep_3 1 513.919921875 3 513.919957 1538.73804 NaN NaN NaN NaN NaN NaN NaN 54.513 1 54.513 54.013 55.013 0 0 0 0 0.38417 1 11807 11807 0.094841 0 1 29446 11147 18666 18677 34080 34080 -0.009777498320545419 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 ENST00000379514.2_1_9:33503785-33510678:-|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1 ENST00000379514.2_1_9:33503785-33510678:-|nuORF ENST00000379514.2_1_9:33503785-33510678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 500.24188232421875 2 500.242732 998.470912 0.29376 0.00014695 -0.10925 -5.4653E-05 0.18451 9.2298E-05 500.2425577923204 65.211 0.50851 68.665 68.418 68.927 3.4541 48 36 2 0 0 0 0.021334 5 14779 14767;14779;14829;14841;14859 62.573 35.689 1 132270 29447 4179 18667 18678 34081;34082;34083;34084;34085 34082 -0.028385117190964593 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 ENST00000379514.2_1_9:33503785-33510678:-|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1 ENST00000379514.2_1_9:33503785-33510678:-|nuORF ENST00000379514.2_1_9:33503785-33510678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 500.24261474609375 2 500.242732 998.470912 0.32218 0.00016117 -0.15777 -7.8926E-05 0.1644 8.2241E-05 500.2425014213015 65.034 0.52805 68.513 68.238 68.766 3.4792 57 37 2 0 0 0 0.097406 3 14731 14713;14731;14756 34.402 15.145 1 104510 29448 4179 18667 18678 34086;34087;34088 34087 -0.028385117190964593 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 ENST00000379514.2_1_9:33503785-33510678:-|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1 ENST00000379514.2_1_9:33503785-33510678:-|nuORF ENST00000379514.2_1_9:33503785-33510678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 500.241943359375 2 500.242732 998.470912 0.29082 0.00014548 -0.52338 -0.00026182 -0.23256 -0.00011634 500.2422875439668 64.932 0.45122 68.44 68.208 68.659 3.5077 50 31 2 0 0 0 0.16559 1 14595 14595 24.021 9.1823 1 116510 29449 4179 18667 18678 34089 34089 -0.028385117190964593 NYADPAFVYD 10 Unmodified _NYADPAFVYD_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN47_class_I_Rep_3 4 587.7581787109375 2 587.756204 1173.49785 NaN NaN NaN NaN NaN NaN NaN 42.413 1 45.652 45.152 46.152 3.2394 0 0 0 0.53105 1 8699 8699 1.4819 0.15237 1 + 29450 21014 18668 18679 34090 34090 -0.08195447898560815 NYAINLIYN 9 Unmodified _NYAINLIYN_ 0 0 0 L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|175|3|anti-sense L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|175|3|anti-sense L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|175|3|anti-sense MSMS UPN48_class_I_Rep_3 7 549.28564453125 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 56.929 1 60.472 59.972 60.972 3.5427 0 0 0 0.29868 1 12200 12200 10.824 2.0785 1 29451 11739 18669 18680 34091 34091 0.010894390976773138 NYAQVFNKL 9 Unmodified _NYAQVFNKL_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-SECPEP UPN48_class_I_Rep_2 6 548.298095703125 2 548.792924 1095.57129 0.55412 0.0003041 -0.18233 -0.00010006 0.37179 0.00020403 548.7930719787937 53.319 0.29553 56.928 56.796 57.091 3.6098 30 19 2 0 0 0 0.11705 1 11193 11193 10.824 10.824 1 86484 29452 2961 18670 18681 34092 34092 0.027331453345595946 NYAQVLDKF 9 Unmodified _NYAQVLDKF_ 0 0 0 ENST00000519169.5_1_8:131191508-131249207:-|nuORF;ENSG00000153317.15,ASAP1,chr8,-,I33.1,130092144,130112093|24|22.36|4|intron;ENSG00000153317.15,ASAP1,chr8,-,I33.1,130092144,130112093|24|22.36|1|intron;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1 ENST00000519169.5_1_8:131191508-131249207:-|nuORF ENST00000519169.5_1_8:131191508-131249207:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 549.75 2 549.284931 1096.55531 0.55774 0.00030636 -0.098297 -5.3993E-05 0.45944 0.00025237 549.2849646220939 56.871 0.4898 60.366 60.113 60.603 3.4942 49 41 2 0 0 0 0.095537 1 12321 12321 21.537 6.6987 1 115750 29453 3645 18671 18682 34093 34093 0.010894390976773138 NYAQVLDKF 9 Unmodified _NYAQVLDKF_ 0 0 0 ENST00000519169.5_1_8:131191508-131249207:-|nuORF;ENSG00000153317.15,ASAP1,chr8,-,I33.1,130092144,130112093|24|22.36|4|intron;ENSG00000153317.15,ASAP1,chr8,-,I33.1,130092144,130112093|24|22.36|1|intron;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1 ENST00000519169.5_1_8:131191508-131249207:-|nuORF ENST00000519169.5_1_8:131191508-131249207:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.2847900390625 2 549.284931 1096.55531 0.59881 0.00032892 -0.072163 -3.9638E-05 0.52665 0.00028928 549.284908698727 56.835 0.38737 60.368 60.133 60.521 3.5333 49 36 2 0 0 0 0.092386 1 12244 12244 35.612 6.5307 1 134340 29454 3645 18671 18682 34094 34094 0.010894390976773138 NYAQVLDKF 9 Unmodified _NYAQVLDKF_ 0 0 0 ENST00000519169.5_1_8:131191508-131249207:-|nuORF;ENSG00000153317.15,ASAP1,chr8,-,I33.1,130092144,130112093|24|22.36|4|intron;ENSG00000153317.15,ASAP1,chr8,-,I33.1,130092144,130112093|24|22.36|1|intron;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1 ENST00000519169.5_1_8:131191508-131249207:-|nuORF ENST00000519169.5_1_8:131191508-131249207:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 549.284931 1096.55531 0.33255 0.00018267 -0.25016 -0.00013741 0.082391 4.5256E-05 549.2844952766224 56.503 0.092731 60.046 59.98 60.073 3.5427 -0.21413 -0.00017315 NaN 35.612 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 79542 29455 3645 18671 18682 0.010894390976773138 NYARGHYTI 9 Unmodified _NYARGHYTI_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-SECPEP UPN48_class_I_Rep_1 5 547.80029296875 2 547.772522 1093.53049 0.53076 0.00029073 -0.38133 -0.00020888 0.14943 8.1855E-05 547.7723276136362 28.28 0.074755 31.837 31.798 31.873 3.5571 10 6 2 0 0 0 0.12099 1 3756 3756 3.5965 0 1 42739 29456 2425;4314;7292 18672 18683 34095 34095 -0.012531959850548446 NYAYAVFW 8 Unmodified _NYAYAVFW_ 0 0 0 REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.7779541015625 2 517.242535 1032.47052 -0.029514 -1.5266E-05 -0.30503 -0.00015777 -0.33454 -0.00017304 517.2421985365521 44.414 0.77169 48.109 47.711 48.483 3.6951 85 53 2 0 0 0 0.82752 1 9114 9114 0.79363 0 1 144210 + 29457 17383 18673 18684 34096 34096 -0.04441886648305626 NYAYAVFW 8 Unmodified _NYAYAVFW_ 0 0 0 REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 517.242535 1032.47052 -0.029514 -1.5266E-05 -0.30503 -0.00015777 -0.33454 -0.00017304 517.2421985365521 44.414 0.77169 48.109 47.711 48.483 3.6951 0.016483 -3.5831E-05 NaN 0.79363 85 53 2 NaN NaN NaN NaN 0 NaN NaN 0 144210 + 29458 17383 18673 18684 -0.04441886648305626 NYAYAVFW 8 Unmodified _NYAYAVFW_ 0 0 0 REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 517.242535 1032.47052 -0.17354 -8.9761E-05 -0.18642 -9.6427E-05 -0.35996 -0.00018619 517.2422243949961 44.68 0.65241 48.036 47.775 48.428 3.3556 -0.056974 8.6863E-05 NaN 0.79363 81 43 2 NaN NaN NaN NaN 0 NaN NaN 0 136940 + 29459 17383 18673 18684 -0.04441886648305626 NYAYAVFW 8 Unmodified _NYAYAVFW_ 0 0 0 REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense REV__Charlie4a_dup220|chr1:202947722-202948059:+|1.0346891444358497|0.3971834004917776|1.38|151.0|14|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 517.242535 1032.47052 0.063107 3.2642E-05 -0.32674 -0.00016901 -0.26364 -0.00013636 517.2421671585316 44.889 0.88749 48.133 47.763 48.651 3.2441 0.040491 -5.8294E-05 NaN 0.79363 89 56 2 NaN NaN NaN NaN 0 NaN NaN 0 153680 + 29460 17383 18673 18684 -0.04441886648305626 NYCICWPG 8 Unmodified _NYCICWPG_ 0 0 0 AluSx1_dup25532|chr4:48141670-48141952:-|1.0893746535912394|0.0515267396333298|4.4|151.0|15|2|anti-sense AluSx1_dup25532|chr4:48141670-48141952:-|1.0893746535912394|0.0515267396333298|4.4|151.0|15|2|anti-sense AluSx1_dup25532|chr4:48141670-48141952:-|1.0893746535912394|0.0515267396333298|4.4|151.0|15|2|anti-sense MSMS UPN48_class_I_Rep_1 5 478.2999267578125 2 478.193674 954.372794 NaN NaN NaN NaN NaN NaN NaN 60.275 1 63.749 63.249 64.249 3.4737 0 0 0 0.40738 1 13318 13318 0.79363 0 1 29461 315 18674 18685 34097 34097 -0.106217348402879 NYDHEFVLPF 10 Unmodified _NYDHEFVLPF_ 0 0 0 REV__L1MB7_dup4553|chr3:123228604-123229257:+|2.25747167877024|0.3149274113762121|2.84|151.0|54|3|anti-sense REV__L1MB7_dup4553|chr3:123228604-123229257:+|2.25747167877024|0.3149274113762121|2.84|151.0|54|3|anti-sense MSMS UPN48_class_I_Rep_1 5 640.8013305664062 2 640.800946 1279.58734 NaN NaN NaN NaN NaN NaN NaN 43.712 1 47.223 46.723 47.723 3.5103 0 0 0 0.53105 1 8235 8235 1.6526 0.17072 1 + 29462 26269 18675 18686 34098 34098 -0.04127193219210312 NYDHEFVLPF 10 Unmodified _NYDHEFVLPF_ 0 0 0 REV__L1MB7_dup4553|chr3:123228604-123229257:+|2.25747167877024|0.3149274113762121|2.84|151.0|54|3|anti-sense REV__L1MB7_dup4553|chr3:123228604-123229257:+|2.25747167877024|0.3149274113762121|2.84|151.0|54|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 640.8016357421875 2 640.800946 1279.58734 0.42672 0.00027344 -0.13703 -8.781E-05 0.28969 0.00018563 640.8007998142459 43.249 0.63406 47.01 46.865 47.499 3.7617 67 50 2 0 0 0 0.56309 1 8173 8173 1.6526 0.17072 1 120060 + 29463 26269 18675 18686 34099 34099 -0.04127193219210312 NYDQRLNLA 9 Unmodified _NYDQRLNLA_ 0 0 0 nc|ENSG00000259009|P0DV77|TPRX2;ENSG00000178928|ENST00000698655|TPRX1 nc|ENSG00000259009|P0DV77|TPRX2 nc|ENSG00000259009|P0DV77|TPRX2 MULTI-MSMS UPN47_class_I_Rep_2 3 553.7837524414062 2 553.783087 1105.55162 0.4658 0.00025795 -0.58243 -0.00032254 -0.11662 -6.4584E-05 554.2842126223304 76.525 0.48985 79.847 79.67 80.16 3.3216 74 51 2 0 0 0 0.32682 1 18928 18928 12.241 3.4953 1 120440 29464 4836 18676 18687 34100 34100 0.0030676932381084043 NYDQRLNLA 9 Unmodified _NYDQRLNLA_ 0 0 0 nc|ENSG00000259009|P0DV77|TPRX2;ENSG00000178928|ENST00000698655|TPRX1 nc|ENSG00000259009|P0DV77|TPRX2 nc|ENSG00000259009|P0DV77|TPRX2 MULTI-MSMS UPN47_class_I_Rep_3 4 553.7826538085938 2 553.783087 1105.55162 0.4588 0.00025408 -0.84989 -0.00047065 -0.39109 -0.00021658 553.7826825396432 76.617 0.50264 79.886 79.591 80.094 3.269 89 50 2 0 0 0 0.32682 1 19014 19014 12.241 1.4411 1 92410 29465 4836 18676 18687 34101 34101 0.0030676932381084043 NYEFPHLQN 9 Unmodified _NYEFPHLQN_ 0 0 0 ENSG00000001561|ENST00000321037|ENPP4 ENSG00000001561|ENST00000321037|ENPP4 ENSG00000001561|ENST00000321037|ENPP4 MULTI-MSMS UPN48_class_I_Rep_3 7 581.7716064453125 2 581.269813 1160.52507 0.35651 0.00020723 0.033304 1.9359E-05 0.38982 0.00022659 581.2697685997131 52.462 0.69073 56.06 55.767 56.458 3.5979 104 57 2 0 0 0 0.31407 1 10765 10765 13.042 1.4022 1 255220 29466 668 18677 18688 34102 34102 -0.04876919567504956 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000150760|ENST00000623213|DOCK1;ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS UPN48_class_I_Rep_1 5 541.2769775390625 2 541.276909 1080.53927 0.42886 0.00023213 -0.013681 -7.4054E-06 0.41518 0.00022473 541.276690303522 72.463 0.46565 75.936 75.626 76.091 3.4732 49 38 2 0 0 0 0.25207 3 16979 16979;17018;17051 16.942 5.302 1 70994 29467 3476;2853;3571 18678 18689 34103;34104;34105 34103 0.0022177765142714634 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000150760|ENST00000623213|DOCK1;ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS UPN48_class_I_Rep_2 6 541.2770385742188 2 541.276909 1080.53927 0.47178 0.00025536 -0.3648 -0.00019746 0.10698 5.7904E-05 541.2766859868807 72.262 0.35782 75.827 75.634 75.992 3.5645 47 33 2 0 0 0 0.25207 2 16863 16863;16921 16.942 5.302 1 138620 29468 3476;2853;3571 18678 18689 34106;34107 34106 0.0022177765142714634 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000150760|ENST00000623213|DOCK1;ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS UPN48_class_I_Rep_3 7 541.277587890625 2 541.276909 1080.53927 0.5866 0.00031751 -0.33844 -0.00018319 0.24815 0.00013432 541.2765819305883 72.182 0.3189 75.708 75.558 75.877 3.5266 52 32 2 0 0 0 0.25207 1 16853 16853 16.942 0 1 64323 29469 3476;2853;3571 18678 18689 34108 34108 0.0022177765142714634 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000150760|ENST00000623213|DOCK1;ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MATCH UPN48_class_I_Rep_2 6 2 541.276909 1080.53927 0.47157 0.00025525 0.070641 3.8236E-05 0.54221 0.00029348 541.2764608053574 72.057 0.067902 75.607 75.545 75.613 3.5505 -0.050519 0.00037032 NaN 16.942 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 54588 29470 3476;2853;3571 18678 18689 0.0022177765142714634 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000150760|ENST00000623213|DOCK1;ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MATCH UPN48_class_I_Rep_3 7 2 541.276909 1080.53927 0.58697 0.00031771 -0.82604 -0.00044711 -0.23907 -0.0001294 541.2764089473251 72.589 0.052933 76.126 76.083 76.136 3.5373 0.16326 -0.00061705 NaN 16.942 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 46117 29471 3476;2853;3571 18678 18689 0.0022177765142714634 NYFNEGVRY 9 Unmodified _NYFNEGVRY_ 0 0 0 REV__L1PA5_dup1851|chr3:47467754-47468941:-|1.50434674724505|0.3038352825722201|2.31|151.0|4|1|sense REV__L1PA5_dup1851|chr3:47467754-47468941:-|1.50434674724505|0.3038352825722201|2.31|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.2701416015625 2 581.269813 1160.52507 0.42626 0.00024777 -0.097112 -5.6448E-05 0.32915 0.00019132 581.2696547479546 52.465 0.71572 55.988 55.739 56.454 3.5227 112 63 2 0 0 0 0.23293 2 10921 10921;10962 18.146 1.4022 1 252260 + 29472 29706 18679 18690 34109;34110 34109 -0.04876919567504956 NYFNEGVRY 9 Unmodified _NYFNEGVRY_ 0 0 0 REV__L1PA5_dup1851|chr3:47467754-47468941:-|1.50434674724505|0.3038352825722201|2.31|151.0|4|1|sense REV__L1PA5_dup1851|chr3:47467754-47468941:-|1.50434674724505|0.3038352825722201|2.31|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.7705078125 2 581.269813 1160.52507 0.51422 0.0002989 -0.13737 -7.9852E-05 0.37684 0.00021905 581.2696914844627 52.402 0.76535 56.041 55.688 56.453 3.639 110 64 2 0 0 0 0.31407 1 10814 10814 13.042 0 1 244050 + 29473 29706 18679 18690 34111 34111 -0.04876919567504956 NYFNEGVRY 9 Unmodified _NYFNEGVRY_ 0 0 0 REV__L1PA5_dup1851|chr3:47467754-47468941:-|1.50434674724505|0.3038352825722201|2.31|151.0|4|1|sense REV__L1PA5_dup1851|chr3:47467754-47468941:-|1.50434674724505|0.3038352825722201|2.31|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.2694702148438 2 581.269813 1160.52507 0.35651 0.00020723 0.033304 1.9359E-05 0.38982 0.00022659 581.2697685997131 52.462 0.69073 56.06 55.767 56.458 3.5979 104 57 2 0 0 0 0.23293 4 10800 10781;10800;10872;10926 18.146 0 1 255220 + 29474 29706 18679 18690 34112;34113;34114;34115 34113 -0.04876919567504956 NYFPLLFI 8 Unmodified _NYFPLLFI_ 0 0 0 HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|210|2|anti-sense HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|210|2|anti-sense HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|210|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7882690429688 2 513.786579 1025.5586 NaN NaN NaN NaN NaN NaN NaN 44.379 1 47.893 47.393 48.393 3.5132 0 0 0 0.40604 1 8441 8441 2.5775 0 1 29475 8412 18680 18691 34116 34116 0.04684733942326602 NYFSRSPGSF 10 Unmodified _NYFSRSPGSF_ 0 0 0 L1MC4a_dup4068|chr7:152305629-152306096:-|1.8529225871092985|0.010949780986492|7.4|151.0|26|2|anti-sense L1MC4a_dup4068|chr7:152305629-152306096:-|1.8529225871092985|0.010949780986492|7.4|151.0|26|2|anti-sense L1MC4a_dup4068|chr7:152305629-152306096:-|1.8529225871092985|0.010949780986492|7.4|151.0|26|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.2686767578125 2 581.269813 1160.52507 0.51422 0.0002989 -0.13737 -7.9852E-05 0.37684 0.00021905 581.2696914844627 52.402 0.76535 56.041 55.688 56.453 3.639 110 64 2 0 0 0 0.40112 1 10825 10825 19.362 1.2156 1 244050 29476 11572 18681 18692 34117 34117 -0.04876919567504956 NYFVSSLFQF 10 Unmodified _NYFVSSLFQF_ 0 0 0 REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|115|2|anti-sense REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|115|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.30517578125 2 626.305864 1250.59717 0.47401 0.00029688 -0.088253 -5.5274E-05 0.38576 0.0002416 626.3056470713627 70.71 0.60432 74.17 73.881 74.485 3.4598 99 63 2 0 0 0 0.32646 1 16446 16446 26.268 0 1 346720 + 29477 24784 18682 18693 34118 34118 -0.018100052138152023 NYFVSSLFQF 10 Unmodified _NYFVSSLFQF_ 0 0 0 REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|115|2|anti-sense REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|115|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.8079223632812 2 626.305864 1250.59717 0.65803 0.00041213 -0.3996 -0.00025027 0.25843 0.00016186 626.3054318553203 70.424 0.75105 73.942 73.646 74.397 3.5185 157 74 3 0 0 0 0.21192 3 16275 16237;16275;16309 47.749 7.799 1 422760 + 29478 24784 18682 18693 34119;34120;34121 34120 -0.018100052138152023 NYGDQVQHF 9 Unmodified _NYGDQVQHF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-SECPEP UPN48_class_I_Rep_1 5 554.3123168945312 2 554.246338 1106.47812 0.53006 0.00029378 -1.3074 -0.00072463 -0.77736 -0.00043085 554.2454465496526 37.043 0.34165 40.55 40.389 40.73 3.507 55 36 2 0 0 0 0.10301 1 6243 6243 18.146 9.5531 1 135030 29479 3658 18683 18694 34122 34122 -0.07085779118665414 NYGDQVQHF 9 Unmodified _NYGDQVQHF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MATCH UPN48_class_I_Rep_2 6 2 554.246338 1106.47812 0.46379 0.00025706 -0.97946 -0.00054286 -0.51567 -0.00028581 554.2458257163624 36.844 0.36949 40.546 40.358 40.728 3.7021 0.018147 0.00012537 NaN 18.146 62 42 2 NaN NaN NaN NaN 0 NaN NaN 0 126190 29480 3658 18683 18694 -0.07085779118665414 NYGDQVQHF 9 Unmodified _NYGDQVQHF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MATCH UPN48_class_I_Rep_3 7 2 554.246338 1106.47812 0.29914 0.0001658 -1.0685 -0.00059224 -0.7694 -0.00042644 554.2458419724119 36.826 0.46871 40.488 40.327 40.796 3.663 -0.039755 2.6622E-05 NaN 18.146 67 50 2 NaN NaN NaN NaN 0 NaN NaN 0 117110 29481 3658 18683 18694 -0.07085779118665414 NYGVIIPYPP 10 Unmodified _NYGVIIPYPP_ 0 0 0 ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2 ENSG00000055163|ENST00000620254|CYFIP2 ENSG00000055163|ENST00000620254|CYFIP2 MSMS UPN48_class_I_Rep_3 7 566.8052368164062 2 566.8055 1131.59645 NaN NaN NaN NaN NaN NaN NaN 57.43 1 60.962 60.462 61.462 3.5317 0 0 0 0.53105 1 12353 12353 6.7232 0 1 29482 940 18684 18695 34123 34123 0.035912001371116276 NYGVSMTTLNE 11 Unmodified _NYGVSMTTLNE_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MSMS UPN48_class_I_Rep_1 5 614.3104858398438 2 614.779353 1227.54415 NaN NaN NaN NaN NaN NaN NaN 71.706 1 75.172 74.672 75.672 3.466 0 0 0 0.38417 1 16783 16783 2.086 0 1 29483 3214 18685 18696 34124 34124 -0.060517510587942525 NYHKIRKQ 8 Unmodified _NYHKIRKQ_ 0 0 0 L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|68|2|sense L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|68|2|sense L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 543.8256225585938 2 543.811982 1085.60941 NaN NaN NaN NaN NaN NaN NaN 35.703 1 39.213 38.713 39.713 3.5101 0 0 0 0.38547 1 5874 5874 13.508 4.9146 1 29484 14774 18686 18697 34125 34125 0.07003076039904954 NYHPFAEC 8 Unmodified _NYHPFAEC_ 0 0 0 chr5:169747504-169803058|81|11.47|0.33|5.1|+|2|DOCK2,DOCK2|1 chr5:169747504-169803058|81|11.47|0.33|5.1|+|2|DOCK2,DOCK2|1 chr5:169747504-169803058|81|11.47|0.33|5.1|+|2|DOCK2,DOCK2|1 MSMS UPN47_class_I_Rep_1 2 490.7010498046875 2 490.700177 979.385802 NaN NaN NaN NaN NaN NaN NaN 19.936 1 23.548 23.048 24.048 3.6118 0 0 0 0.40625 1 1918 1918 2.3027 0 1 29485 610 18687 18698 34126 34126 -0.10471580456544416 NYIDKVRFL 9 Unmodified _NYIDKVRFL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 584.3297119140625 2 584.329673 1166.64479 0.46011 0.00026885 0.032826 1.9181E-05 0.49293 0.00028803 584.3295614145834 55.035 0.75867 58.544 58.131 58.89 3.5082 113 50 3 0 0 0 0.0065234 5 11699 11615;11654;11699;11750;11791 74.2 16.898 1 548870 29486 824 18688 18699 34127;34128;34129;34130;34131 34129 0.06813693777053231 NYIDKVRFL 9 Unmodified _NYIDKVRFL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_2 6 584.329833984375 2 584.329673 1166.64479 0.59794 0.0003494 -0.22924 -0.00013395 0.3687 0.00021544 584.3295354518347 54.983 0.76272 58.539 58.101 58.864 3.5559 97 46 3 0 0 0 0.048729 4 11642 11597;11642;11687;11737 49.527 13.021 1 347690 29487 824 18688 18699 34132;34133;34134;34135 34133 0.06813693777053231 NYIDKVRFL 9 Unmodified _NYIDKVRFL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_3 7 584.3303833007812 2 584.329673 1166.64479 0.36654 0.00021418 0.063936 3.736E-05 0.43047 0.00025154 584.3296177120355 54.864 0.86 58.433 58.053 58.913 3.5694 89 53 3 0 0 0 0.097406 3 11499 11499;11558;11640 34.402 11.665 1 493260 29488 824 18688 18699 34136;34137;34138 34136 0.06813693777053231 NYIFKLLLHI 10 Unmodified _NYIFKLLLHI_ 0 0 0 REV__Tigger17a_dup1910|chr16:23878135-23878750:-|2.865097624872405|0.0059170397219605|8.92|151.0|7|2|sense REV__Tigger17a_dup1910|chr16:23878135-23878750:-|2.865097624872405|0.0059170397219605|8.92|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 637.3853759765625 2 637.386991 1272.75943 NaN NaN NaN NaN NaN NaN NaN 102.28 1 105.77 105.27 106.27 3.4873 0 0 0 0.53105 1 25156 25156 1.6526 0.32309 1 + 29489 32602 18689 18700 34139 34139 0.1339600325900392 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 538.3167724609375 2 538.316566 1074.61858 0.51317 0.00027625 0.074187 3.9936E-05 0.58736 0.00031618 538.3165644620715 61.86 0.54974 65.328 65.035 65.584 3.4678 120 49 3 0 0 0 0.0064763 2 13819 13730;13819 88.954 36.686 1 618790 29490 941 18690 18701 34140;34141 34141 0.08425424605570697 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 538.3167724609375 2 538.316566 1074.61858 0.51946 0.00027964 0.11007 5.9253E-05 0.62953 0.00033889 538.3165986166567 61.781 0.75533 65.255 64.963 65.718 3.4738 89 61 3 0 0 0 0.0059033 3 13725 13675;13725;13764 88.954 36.686 1 562600 29491 941 18690 18701 34142;34143;34144 34143 0.08425424605570697 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 538.316162109375 2 538.316566 1074.61858 0.5748 0.00030942 0.088123 4.7438E-05 0.66292 0.00035686 538.3165415573261 61.61 0.63538 65.122 64.798 65.434 3.5126 124 54 3 0 0 0 0.0054033 2 13563 13563;13621 78.728 34.87 1 493440 29492 941 18690 18701 34145;34146 34145 0.08425424605570697 NYIKDLNIL 9 Unmodified _NYIKDLNIL_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-SECPEP UPN48_class_I_Rep_1 5 553.2693481445312 2 553.316232 1104.61791 0.61521 0.0003404 -0.21513 -0.00011904 0.40007 0.00022137 553.3159712984218 64.183 0.90458 67.64 67.301 68.205 3.4578 109 67 3 0 0 0 0.031831 1 14471 14471 55.235 1.8306 1 470230 29493 3038 18691 18702 34147 34147 0.06978585165848017 NYIKDLNIL 9 Unmodified _NYIKDLNIL_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS UPN48_class_I_Rep_3 7 553.31640625 2 553.316232 1104.61791 0.40817 0.00022585 0.0004331 2.3964E-07 0.4086 0.00022609 553.3161423451676 63.859 0.69749 67.367 67.042 67.74 3.5083 150 57 3 0 0 0 0.022868 1 14307 14307 61.602 3.8799 1 801410 29494 3038 18691 18702 34148 34148 0.06978585165848017 NYIKSLSSF 9 Unmodified _NYIKSLSSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS UPN48_class_I_Rep_2 6 529.77880859375 2 529.779482 1057.54441 0.46719 0.00024751 -0.23585 -0.00012495 0.23134 0.00012256 529.7792793585883 52.784 0.67711 56.394 56.164 56.841 3.6098 69 42 2 0 0 0 0.279 1 10997 10997 15.248 3.0078 1 145550 29495 3749 18692 18703 34149 34149 0.017940367233904908 NYIKSLSSF 9 Unmodified _NYIKSLSSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS UPN48_class_I_Rep_3 7 529.7796630859375 2 529.779482 1057.54441 0.34992 0.00018538 -0.20347 -0.0001078 0.14645 7.7587E-05 529.779420522262 52.822 0.64268 56.42 56.08 56.723 3.5979 65 41 2 0 0 0 0.24936 1 10970 10970 17.113 3.2068 1 176040 29496 3749 18692 18703 34150 34150 0.017940367233904908 NYIKSLSSF 9 Unmodified _NYIKSLSSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 529.779482 1057.54441 0.46719 0.00024751 -0.23585 -0.00012495 0.23134 0.00012256 529.7792793585883 52.784 0.67711 56.394 56.164 56.841 3.6098 -0.034955 -3.5734E-05 NaN 17.113 69 42 2 NaN NaN NaN NaN 0 NaN NaN 0 145550 29497 3749 18692 18703 0.017940367233904908 NYILIYLLVLF 11 Unmodified _NYILIYLLVLF_ 0 0 0 REV__ENSG00000168038|ENST00000301831|ULK4 REV__ENSG00000168038|ENST00000301831|ULK4 MSMS UPN48_class_I_Rep_1 5 461.9486389160156 3 461.94773 1382.82136 NaN NaN NaN NaN NaN NaN NaN 102.83 1 106.45 105.95 106.95 3.6164 0 0 0 0.38417 1 24789 24789 2.8433 0.21205 1 + 29498 20257 18693 18704 34151 34151 0.14526309887446587 NYIQGAGLIY 10 Unmodified _NYIQGAGLIY_ 0 0 0 REV__L1MC1_dup4420|chr5:75595283-75595916:+|1.057047528162951|0.486599420979131|1.12|151.0|28|1|anti-sense REV__L1MC1_dup4420|chr5:75595283-75595916:+|1.057047528162951|0.486599420979131|1.12|151.0|28|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.293701171875 2 556.292756 1110.57096 0.37827 0.00021043 -0.081881 -4.555E-05 0.29639 0.00016488 556.2926758298419 71.011 0.45898 71.011 70.837 71.296 0 64 51 2 0 0 0 0.51003 1 16316 16316 10.824 0.75 1 135650 + 29499 26553 18694 18705 34152 34152 0.020097256147437292 NYKAMRKHW 9 Unmodified _NYKAMRKHW_ 0 0 0 chr20:2796600-2797006|40|16.35|0.34|5.57|-|0|None,CPXM1|1 chr20:2796600-2797006|40|16.35|0.34|5.57|-|0|None,CPXM1|1 chr20:2796600-2797006|40|16.35|0.34|5.57|-|0|None,CPXM1|1 MSMS UPN48_class_I_Rep_2 6 617.3900146484375 2 617.319117 1232.62368 NaN NaN NaN NaN NaN NaN NaN 66.429 1 69.916 69.416 70.416 3.4866 0 0 0 0.39518 1 15175 15175 1.8442 0 1 29500 602 18695 18706 34153 34153 0.01667405196553773 NYKEVYTEY 9 Unmodified _NYKEVYTEY_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MSMS UPN48_class_I_Rep_1 5 604.7782592773438 2 604.777136 1207.53972 NaN NaN NaN NaN NaN NaN NaN 38.616 1 42.121 41.621 42.621 3.5048 0 0 0 0.32573 1 6714 6714 9.3831 1.2276 1 + 29501 20536 18696 18707 34154 34154 -0.055748922100292475 NYKFKEDEK 9 Unmodified _NYKFKEDEK_ 0 0 0 REV__L1M4_dup12716|chr10:27519081-27519882:+|1.3201555126159596|0.078535178739387|4.07|151.0|5|1|sense REV__L1M4_dup12716|chr10:27519081-27519882:+|1.3201555126159596|0.078535178739387|4.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 600.7986450195312 2 600.798403 1199.58225 NaN NaN NaN NaN NaN NaN NaN 47.186 1 50.881 50.381 51.381 3.6951 0 0 0 0.38916 1 10080 10080 3.2813 0 1 + 29502 24356 18697 18708 34155 34155 -0.00955497081804424 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_1 5 422.8765869140625 3 422.876634 1265.60807 -0.10415 -4.4044E-05 0.11279 4.7696E-05 0.008635 3.6515E-06 422.87662839119076 43.658 1.8438 47.168 46.785 48.629 3.5103 407 144 4 0 0 0 0.090251 9 8239 8127;8165;8202;8239;8276;8315;8355;8398;8470 36.506 18.133 1 2406400 29503 1207 18698 18709 34156;34157;34158;34159;34160;34161;34162;34163;34164 34159 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_1 5 633.8113403320312 2 633.811313 1265.60807 0.442 0.00028014 -0.12416 -7.8693E-05 0.31784 0.00020145 633.8111312048985 43.671 1.3159 47.182 46.8 48.116 3.5103 307 104 4 0 0 0 0.0010613 9 8183 8143;8183;8220;8257;8298;8338;8385;8425;8467 152.89 105.14 1 1210100 29504 1207 18698 18709 34165;34166;34167;34168;34169;34170;34171;34172;34173 34166 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_2 6 422.8765869140625 3 422.876634 1265.60807 0.0089108 3.7682E-06 0.028601 1.2095E-05 0.037512 1.5863E-05 422.87659495138803 43.322 1.9813 47.083 46.604 48.586 3.7617 425 149 4 0 0 0 0.061943 9 8186 8037;8076;8113;8149;8186;8260;8300;8339;8395 40.239 21.518 1 2236100 29505 1207 18698 18709 34174;34175;34176;34177;34178;34179;34180;34181;34182 34178 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_2 6 633.8113403320312 2 633.811313 1265.60807 0.42415 0.00026883 -0.085959 -5.4482E-05 0.33819 0.00021435 633.8112018908088 43.253 1.5182 47.014 46.623 48.141 3.7617 363 117 4 0 0 0 3.8699E-05 11 8089 8048;8054;8089;8125;8164;8202;8242;8282;8326;8364;8404 168.54 120.79 1 1368800 29506 1207 18698 18709 34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193 34185 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MSMS UPN48_class_I_Rep_2 6 633.812255859375 2 633.811313 1265.60807 NaN NaN NaN NaN NaN NaN NaN 44.49 1 48.251 47.751 48.751 3.7617 0 0 0 0.38784 1 8484 8484 3.5965 0.60125 1 29507 1207 18698 18709 34194 34194 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_3 7 422.8764953613281 3 422.876634 1265.60807 0.030383 1.2848E-05 -0.0051795 -2.1903E-06 0.025203 1.0658E-05 422.87656675165937 43.492 1.7303 47.13 46.654 48.385 3.6385 383 124 4 0 0 0 0.10817 8 8046 8002;8046;8084;8123;8164;8249;8297;8381 36.506 18.133 1 2102500 29508 1207 18698 18709 34195;34196;34197;34198;34199;34200;34201;34202 34196 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_3 7 633.8114624023438 2 633.811313 1265.60807 0.53587 0.00033964 -0.26419 -0.00016745 0.27168 0.00017219 633.8111172761066 43.465 1.514 47.104 46.75 48.264 3.6385 306 107 4 0 0 0 0.0060665 10 8127 8003;8047;8086;8127;8169;8211;8252;8292;8331;8341 189.73 141.98 1 1180100 29509 1207 18698 18709 34203;34204;34205;34206;34207;34208;34209;34210;34211;34212 34206 -0.014106028395417525 NYKKLPIL 8 Unmodified _NYKKLPIL_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|32|1|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|32|1|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|32|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 494.8131103515625 2 494.813128 987.611703 0.28437 0.00014071 0.02743 1.3573E-05 0.31179 0.00015428 494.8130368994743 68.096 0.78835 71.604 71.258 72.047 3.5083 157 73 3 0 0 0 0.82752 5 15615 15615;15660;15696;15738;15771 13.508 0 1 901640 29510 15331 18699 18710 34213;34214;34215;34216;34217 34213 0.11740111725009683 NYKKLPIL 8 Unmodified _NYKKLPIL_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|32|1|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|32|1|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|32|1|sense MSMS UPN48_class_I_Rep_2 6 494.8133850097656 2 494.813128 987.611703 NaN NaN NaN NaN NaN NaN NaN 68.54 1 72.048 71.548 72.548 3.5083 0 0 0 0.39819 1 15814 15814 8.5933 0 1 29511 15331 18699 18710 34218 34218 0.11740111725009683 NYKKQMHR 8 Unmodified _NYKKQMHR_ 0 0 0 ENSG00000107789|ENST00000371996|MINPP1;nc|ENSG00000107789|Q9UNW1-4|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 MSMS UPN48_class_I_Rep_2 6 552.79052734375 2 552.790192 1103.56583 NaN NaN NaN NaN NaN NaN NaN 57.93 1 61.444 60.944 61.944 3.5142 0 0 0 0.40746 1 12572 12572 0.69038 0 1 29512 1831 18700 18711 34219 34219 0.018191432711091693 NYKVSVGRNE 10 Unmodified _NYKVSVGRNE_ 0 0 0 ENST00000510478.1_1_5:72863151-72863352:+|nuORF ENST00000510478.1_1_5:72863151-72863352:+|nuORF ENST00000510478.1_1_5:72863151-72863352:+|nuORF MSMS UPN48_class_I_Rep_1 5 583.29931640625 2 583.301644 1164.58874 NaN NaN NaN NaN NaN NaN NaN 24.036 1 27.602 27.102 28.102 3.5655 0 0 0 0.53105 1 2592 2592 1.1933 0.59184 1 29513 7180 18701 18712 34220 34220 0.013024408695855527 NYLDKHLHK 9 Unmodified _NYLDKHLHK_ 0 0 0 REV__L1ME1_dup28414|chr18:35052075-35052886:-|1.081935065453998|0.0177503504713677|5.93|151.0|16|3|sense REV__L1ME1_dup28414|chr18:35052075-35052886:-|1.081935065453998|0.0177503504713677|5.93|151.0|16|3|sense MSMS UPN48_class_I_Rep_3 7 584.3299560546875 2 584.317097 1166.61964 NaN NaN NaN NaN NaN NaN NaN 54.948 1 58.518 58.018 59.018 3.5694 0 0 0 0.2088 1 11602 11602 15.847 2.8047 1 + 29514 27733 18702 18713 34221 34221 0.04299638974453046 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5D|p.T268Nfs*7|1|0.17|ENSG00000012817|chrY:19735484-19735485|-/G|frameshift_variant nc|ENSG00000012817|Q9BY66-2|KDM5D nc|ENSG00000012817|Q9BY66-2|KDM5D MSMS UPN48_class_I_Rep_1 5 556.2915649414062 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 66.205 1 69.657 69.157 70.157 3.4516 0 0 0 0.098423 1 15122 15122 24.991 12.459 1 29515 783 18703 18714 34222 34222 0.02009725614720992 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5D|p.T268Nfs*7|1|0.17|ENSG00000012817|chrY:19735484-19735485|-/G|frameshift_variant nc|ENSG00000012817|Q9BY66-2|KDM5D nc|ENSG00000012817|Q9BY66-2|KDM5D MSMS UPN48_class_I_Rep_2 6 556.2932739257812 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 65.885 1 69.372 68.872 69.872 3.4866 0 0 0 0.098423 1 15010 15010 24.991 12.75 1 29516 783 18703 18714 34223 34223 0.02009725614720992 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5D|p.T268Nfs*7|1|0.17|ENSG00000012817|chrY:19735484-19735485|-/G|frameshift_variant nc|ENSG00000012817|Q9BY66-2|KDM5D nc|ENSG00000012817|Q9BY66-2|KDM5D MSMS UPN48_class_I_Rep_3 7 556.2926025390625 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 65.886 1 69.394 68.894 69.894 3.5077 0 0 0 0.081356 1 14923 14923 28.495 15.963 1 29517 783 18703 18714 34224 34224 0.02009725614720992 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5D|p.T268Nfs*7|1|0.17|ENSG00000012817|chrY:19735484-19735485|-/G|frameshift_variant nc|ENSG00000012817|Q9BY66-2|KDM5D nc|ENSG00000012817|Q9BY66-2|KDM5D MSMS UPN48_class_I_Rep_3 7 556.2928466796875 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 65.964 1 69.472 68.972 69.972 3.5077 0 0 0 0.070158 1 14947 14947 31.268 14.155 1 29518 783 18703 18714 34225 34225 0.02009725614720992 NYLHLDYNF 9 Unmodified _NYLHLDYNF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN48_class_I_Rep_1 5 599.7804565429688 2 599.780013 1197.54547 NaN NaN NaN NaN NaN NaN NaN 65.869 1 69.321 68.821 69.821 3.4516 0 0 0 0.35904 1 15018 15018 7.609 2.3121 1 29519 4671 18704 18715 34226 34226 -0.04539748907723151 NYLKVENLL 9 Unmodified _NYLKVENLL_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.8176879882812 2 553.316232 1104.61791 0.61521 0.0003404 -0.21513 -0.00011904 0.40007 0.00022137 553.3159712984218 64.183 0.90458 67.64 67.301 68.205 3.4578 109 67 3 0 0 0 0.038999 3 14540 14540;14580;14619 53.404 0 1 470230 29520 9474 18705 18716 34227;34228;34229 34227 0.06978585165848017 NYLKVENLL 9 Unmodified _NYLKVENLL_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 553.3163452148438 2 553.316232 1104.61791 0.53206 0.00029439 -0.09611 -5.3179E-05 0.43595 0.00024122 553.3160555872686 64.149 0.79274 67.624 67.147 67.94 3.4743 124 59 3 0 0 0 0.019142 5 14473 14389;14432;14473;14512;14558 63.961 0 1 908050 29521 9474 18705 18716 34230;34231;34232;34233;34234 34232 0.06978585165848017 NYLKVENLL 9 Unmodified _NYLKVENLL_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 553.2696533203125 2 553.316232 1104.61791 0.53206 0.00029439 -0.09611 -5.3179E-05 0.43595 0.00024122 553.3160555872686 64.149 0.79274 67.624 67.147 67.94 3.4743 124 59 3 0 0 0 0.044693 1 14451 14451 49.554 0 1 908050 29522 9474 18705 18716 34235 34235 0.06978585165848017 NYLKVENLL 9 Unmodified _NYLKVENLL_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 553.3168334960938 2 553.316232 1104.61791 0.40817 0.00022585 0.0004331 2.3964E-07 0.4086 0.00022609 553.3161423451676 63.859 0.69749 67.367 67.042 67.74 3.5083 150 57 3 0 0 0 0.043452 3 14381 14268;14344;14381 51.63 0 1 801410 29523 9474 18705 18716 34236;34237;34238 34238 0.06978585165848017 NYLKVENLL 9 Unmodified _NYLKVENLL_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|13|1|sense MSMS UPN48_class_I_Rep_3 7 553.3157958984375 2 553.316232 1104.61791 NaN NaN NaN NaN NaN NaN NaN 64.271 1 67.78 67.28 68.28 3.5083 0 0 0 0.21832 1 14437 14437 15.248 0 1 29524 9474 18705 18716 34239 34239 0.06978585165848017 NYLLKFCF 8 Unmodified _NYLLKFCF_ 0 0 0 REV__Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense REV__Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense MSMS UPN46_class_I_Rep_3 1 524.30810546875 2 524.270238 1046.52592 NaN NaN NaN NaN NaN NaN NaN 25.863 1 25.863 25.363 26.363 0 0 0 0 0.40625 1 3612 3612 2.3027 0 1 + 29525 32639 18706 18717 34240 34240 0.004522035478203179 NYLMKKHK 8 Unmodified _NYLMKKHK_ 0 0 0 REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|11|1|sense REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|11|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 530.7352905273438 2 531.299862 1060.58517 0.43024 0.00022858 -0.41918 -0.00022271 0.011057 5.8745E-06 531.8006744123616 22.17 0.051506 25.724 25.689 25.74 3.5533 5 4 2 0 0 0 0.72333 1 2133 2133 0.69038 0 1 22000 + 29526 25476 18707 18718 34241 34241 0.05730099561992574 NYLMKKHK 8 Unmodified _NYLMKKHK_ 0 0 0 REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|11|1|sense REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|11|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 531.299862 1060.58517 -0.014766 -7.8454E-06 1.1725 0.00062297 1.1578 0.00061513 531.8014066758626 25.916 0.072283 25.916 25.864 25.936 0 0.096443 0.00042042 NaN 0.69038 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 35954 + 29527 25476 18707 18718 0.05730099561992574 NYLRIKPHQ 9 Unmodified _NYLRIKPHQ_ 0 0 0 REV__ENSG00000159128|ENST00000290219|IFNGR2 REV__ENSG00000159128|ENST00000290219|IFNGR2 MSMS UPN48_class_I_Rep_3 7 584.8308715820312 2 584.832914 1167.65128 NaN NaN NaN NaN NaN NaN NaN 54.658 1 58.227 57.727 58.727 3.5694 0 0 0 0.19137 1 11512 11512 16.942 0.79319 1 + 29528 19859 18708 18719 34242 34242 0.0741563172844053 NYLVLFALF 9 Unmodified _NYLVLFALF_ 0 0 0 REV__ENSG00000058063.16,ATP11B,chr3,+,I24.1,182886011,182887585|30|6.71|1|intron REV__ENSG00000058063.16,ATP11B,chr3,+,I24.1,182886011,182887585|30|6.71|1|intron MSMS UPN48_class_I_Rep_1 5 550.3248901367188 2 550.312961 1098.61137 NaN NaN NaN NaN NaN NaN NaN 65.013 1 68.467 67.967 68.967 3.4541 0 0 0 0.39326 1 14760 14760 2.3027 0 1 + 29529 17707 18709 18720 34243 34243 0.06600692005144992 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MSMS UPN48_class_I_Rep_2 6 551.3244018554688 2 551.324391 1100.63423 0.56096 0.00030927 -0.71484 -0.00039411 -0.15389 -8.4841E-05 551.3239165936665 60.472 0.78189 63.951 63.551 64.333 3.4785 114 68 2 0 0 0 0.032038 3 13342 13302;13342;13413 56.177 24.534 1 334040 29530 2234 18710 18721 34244;34245;34246 34245 0.08793711122621062 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MSMS UPN48_class_I_Rep_2 6 551.323974609375 2 551.324391 1100.63423 NaN NaN NaN NaN NaN NaN NaN 60.168 1 63.655 63.155 64.155 3.4868 0 0 0 0.17222 1 13263 13263 18.146 8.0724 1 29531 2234 18710 18721 34247 34247 0.08793711122621062 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MSMS UPN48_class_I_Rep_3 7 551.3245849609375 2 551.324391 1100.63423 0.38764 0.00021372 -0.39473 -0.00021762 -0.0070849 -3.9061E-06 551.3240741620868 60.233 0.59919 63.749 63.489 64.088 3.5169 117 52 3 0 0 0 0.032038 4 13231 13153;13191;13231;13272 56.177 24.534 1 276870 29532 2234 18710 18721 34248;34249;34250;34251 34250 0.08793711122621062 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 551.324391 1100.63423 0.65408 0.00036061 -1.0167 -0.00056053 -0.36261 -0.00019992 551.3237960228114 60.553 0.73827 64.027 63.592 64.33 3.4737 0.11769 -0.00037283 NaN 56.177 86 53 2 NaN NaN NaN NaN 0 NaN NaN 0 317320 29533 2234 18710 18721 0.08793711122621062 NYMRKRNE 8 Unmodified _NYMRKRNE_ 0 0 0 L1M5_dup37552|chr11:76039288-76039530:+|1.0010041562544485|0.0062763637221792|7.32|151.0|5|2|sense L1M5_dup37552|chr11:76039288-76039530:+|1.0010041562544485|0.0062763637221792|7.32|151.0|5|2|sense L1M5_dup37552|chr11:76039288-76039530:+|1.0010041562544485|0.0062763637221792|7.32|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 555.7771606445312 2 555.777282 1109.54001 NaN NaN NaN NaN NaN NaN NaN 29.169 1 32.898 32.398 33.398 3.7286 0 0 0 0.40643 1 4060 4060 2.0598 0 1 29534 9152 18711 18722 34252 34252 -0.010377509711588573 NYNNELVKCI 10 Unmodified _NYNNELVKCI_ 0 0 0 ENSG00000176101|ENST00000322310|SSNA1 ENSG00000176101|ENST00000322310|SSNA1 ENSG00000176101|ENST00000322310|SSNA1 MSMS UPN48_class_I_Rep_1 5 605.2987670898438 2 605.300255 1208.58596 NaN NaN NaN NaN NaN NaN NaN 45.815 1 49.332 48.832 49.832 3.5162 0 0 0 0.53105 1 8877 8877 2.9952 0 1 29535 4750 18712 18723 34253 34253 -0.009991505795824196 NYNNQFVMF 9 Unmodified _NYNNQFVMF_ 0 0 0 REV__Tigger1_dup6026|chr7:152376099-152377452:+|2.2564115612167464|0.0124921680512169|7.5|151.0|66|1|anti-sense REV__Tigger1_dup6026|chr7:152376099-152377452:+|2.2564115612167464|0.0124921680512169|7.5|151.0|66|1|anti-sense MSMS UPN47_class_I_Rep_2 3 588.75927734375 2 588.760766 1175.50698 NaN NaN NaN NaN NaN NaN NaN 73.921 1 77.225 76.725 77.725 3.3048 0 0 0 0.38639 1 18198 18198 3.9444 0 1 + 29536 32487 18713 18724 34254 34254 -0.07375377813900741 NYNVCLVR 8 Unmodified _NYNVCLVR_ 0 0 0 REV__L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|28|3|anti-sense REV__L1M5_dup47606|chr17:5339825-5340192:+|1.3964400758505178|0.1326546164457733|3.4|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7517395019531 2 490.752744 979.490935 NaN NaN NaN NaN NaN NaN NaN 25.776 1 29.123 28.623 29.623 3.3478 0 0 0 0.40625 1 3675 3675 2.3027 0 1 + 29537 24685 18714 18725 34255 34255 0.0003696073987384807 NYPEEEYEE 9 Unmodified _NYPEEEYEE_ 0 0 0 REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8 REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8 MSMS UPN47_class_I_Rep_1 2 601.228515625 2 601.230216 1200.44588 NaN NaN NaN NaN NaN NaN NaN 114.79 1 118.37 117.87 118.87 3.5809 0 0 0 0.4007 1 28373 28373 0.52476 0 1 + 29538 20607 18715 18726 34256 34256 -0.14632656102958208 NYPRLPRWN 9 Unmodified _NYPRLPRWN_ 0 0 0 MLT1D_dup11815|chrX:118509667-118510173:-|1.2594246853580433|0.0113420601761645|6.79|147.0|10|2|sense MLT1D_dup11815|chrX:118509667-118510173:-|1.2594246853580433|0.0113420601761645|6.79|147.0|10|2|sense MLT1D_dup11815|chrX:118509667-118510173:-|1.2594246853580433|0.0113420601761645|6.79|147.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 405.88409423828125 3 405.884235 1214.63087 0.13183 5.3506E-05 -0.16503 -6.6982E-05 -0.033201 -1.3476E-05 405.88408344189094 65.466 1.5201 68.973 68.018 69.539 3.5077 169 110 3 0 0 0 0.4823 1 14705 14705 2.4985 1.1688 1 209980 29539 16326 18716 18727 34257 34257 0.032144610686145825 NYPVWDTQF 9 Unmodified _NYPVWDTQF_ 0 0 0 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 MSMS UPN48_class_I_Rep_3 7 585.2673950195312 2 585.266739 1168.51892 NaN NaN NaN NaN NaN NaN NaN 73.048 1 76.586 76.086 77.086 3.5373 0 0 0 0.37891 1 17070 17070 5.7319 1.7875 1 29540 3521 18717 18728 34258 34258 -0.05859437799040279 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 581.7752685546875 2 581.775065 1161.53558 0.40863 0.00023773 0.14893 8.6643E-05 0.55756 0.00032437 581.7750570084471 50.1 1.2223 53.625 53.12 54.343 3.5246 174 80 3 0 0 0 0.0055873 5 10276 10109;10152;10189;10235;10276 112.59 112.59 1 606780 29541 6036 18718 18729 34259;34260;34261;34262;34263 34263 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 581.7753295898438 2 581.775065 1161.53558 0.43386 0.00025241 0.055963 3.2558E-05 0.48982 0.00028497 581.7750667800743 49.974 0.90059 53.669 53.146 54.046 3.6946 126 57 3 0 0 0 0.0055873 2 10115 10075;10115 97.075 75.328 1 470460 29542 6036 18718 18729 34264;34265 34265 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 582.2753295898438 2 581.775065 1161.53558 0.45702 0.00026588 -0.30913 -0.00017984 0.14789 8.6039E-05 582.2764707757782 50.548 0.088051 54.216 54.191 54.28 3.6679 6 5 2 0 0 0 0.46434 1 10331 10331 4.3292 1.44 1 86632 29543 6036 18718 18729 34266 34266 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MSMS UPN48_class_I_Rep_2 6 581.77490234375 2 581.775065 1161.53558 NaN NaN NaN NaN NaN NaN NaN 49.994 1 53.689 53.189 54.189 3.6946 0 0 0 1.496E-32 1 10161 10161 104.8 66.825 1 29544 6036 18718 18729 34267 34267 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MSMS UPN48_class_I_Rep_2 6 581.775634765625 2 581.775065 1161.53558 NaN NaN NaN NaN NaN NaN NaN 50.144 1 53.839 53.339 54.339 3.6946 0 0 0 0.030364 1 10207 10207 44.407 29.569 1 29545 6036 18718 18729 34268 34268 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 581.7753295898438 2 581.775065 1161.53558 0.38597 0.00022455 0.16605 9.6601E-05 0.55202 0.00032115 581.7750961965797 49.967 1.0565 53.588 53.179 54.236 3.621 147 66 3 0 0 0 0.0063122 5 10039 10039;10078;10117;10158;10166 97.075 75.328 1 470840 29546 6036 18718 18729 34269;34270;34271;34272;34273 34269 -0.03872892122444682 NYQGVYKAY 9 Unmodified _NYQGVYKAY_ 0 0 0 L1MC5_dup14699|chr20:45040016-45041613:-|1.5823544547130026|0.0130332084108598|6.92|150.0|13|1|sense L1MC5_dup14699|chr20:45040016-45041613:-|1.5823544547130026|0.0130332084108598|6.92|150.0|13|1|sense L1MC5_dup14699|chr20:45040016-45041613:-|1.5823544547130026|0.0130332084108598|6.92|150.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 553.26953125 2 553.269281 1104.52401 0.53313 0.00029497 -0.062059 -3.4336E-05 0.47107 0.00026063 553.2692762209666 63.962 0.70029 67.436 67.051 67.752 3.4743 121 51 3 0 0 0 0.41259 1 14367 14367 7.2892 0.56607 1 401290 29547 11669 18719 18730 34274 34274 -0.02407133936435457 NYQNSMTLVY 10 Unmodified _NYQNSMTLVY_ 0 0 0 L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|64|1|sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|64|1|sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|64|1|sense MSMS UPN47_class_I_Rep_1 2 616.7833862304688 2 616.784438 1231.55432 NaN NaN NaN NaN NaN NaN NaN 45.764 1 49.464 48.964 49.964 3.6999 0 0 0 0.53105 1 9644 9644 6.2058 0.47393 1 29548 15250 18720 18731 34275 34275 -0.05219143333533793 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MSMS UPN48_class_I_Rep_1 5 556.294189453125 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 73.922 1 77.403 76.903 77.903 3.4812 0 0 0 0.31276 1 17446 17446 10.074 1.3285 1 29549 2505 18721 18732 34276 34276 0.020097256147437292 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MSMS UPN48_class_I_Rep_1 5 556.2927856445312 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 74.005 1 77.486 76.986 77.986 3.4812 0 0 0 0.18866 1 17472 17472 17.113 4.0704 1 29550 2505 18721 18732 34277 34277 0.020097256147437292 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MSMS UPN48_class_I_Rep_3 7 556.2925415039062 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 73.852 1 77.402 76.902 77.902 3.5505 0 0 0 0.37476 1 17294 17294 6.7232 0 1 29551 2505 18721 18732 34278 34278 0.020097256147437292 NYRHLPPHPA 10 Unmodified _NYRHLPPHPA_ 0 0 0 AluSx4_dup3924|chr6:73514694-73514933:-|1.3250649595350008|0.1795689994186786|2.88|151.0|15|2|anti-sense AluSx4_dup3924|chr6:73514694-73514933:-|1.3250649595350008|0.1795689994186786|2.88|151.0|15|2|anti-sense AluSx4_dup3924|chr6:73514694-73514933:-|1.3250649595350008|0.1795689994186786|2.88|151.0|15|2|anti-sense MSMS UPN46_class_I_Rep_3 1 601.3173828125 2 601.314889 1200.61522 NaN NaN NaN NaN NaN NaN NaN 59.204 1 59.204 58.704 59.704 0 0 0 0 0.53105 1 13074 13074 1.6526 0.17072 1 29552 337 18722 18733 34279 34279 0.022941745515709044 NYRKNKKTNT 10 Unmodified _NYRKNKKTNT_ 0 0 0 L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|112|2|sense;L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|174|3|sense L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|112|2|sense L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|112|2|sense MSMS UPN46_class_I_Rep_3 1 422.86083984375 3 422.901954 1265.68403 NaN NaN NaN NaN NaN NaN NaN 100.03 1 100.03 99.525 100.53 0 0 0 0 0.53105 1 24380 24380 0.50596 0.27011 1 29553 14482 18723 18734 34280 34280 0.06181794060626089 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_1 5 594.793701171875 2 594.793455 1187.57236 0.55408 0.00032957 -0.22909 -0.00013626 0.325 0.00019331 594.7932111830175 59.252 0.71886 62.732 62.463 63.181 3.4801 97 44 3 0 0 0 0.0073203 1 12983 12983 71.708 37.306 1 448980 29554 3142 18724 18735 34281 34281 -0.01392640296535319 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_3 7 595.7963256835938 2 594.793455 1187.57236 0.48369 0.0002877 -0.15882 -9.4464E-05 0.32487 0.00019323 594.7933469381604 59.056 0.79463 62.579 62.24 63.034 3.5231 129 54 3 0 0 0 0.26468 1 12848 12848 16.149 5.3252 1 369320 29555 3142 18724 18735 34282 34282 -0.01392640296535319 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MATCH UPN48_class_I_Rep_2 6 2 594.793455 1187.57236 0.56746 0.00033752 0.022784 1.3552E-05 0.59024 0.00035107 594.7933233266816 59.21 0.67503 62.697 62.408 63.083 3.4868 0.027747 0.00015871 NaN 71.708 113 44 4 NaN NaN NaN NaN 0 NaN NaN 0 403740 29556 3142 18724 18735 -0.01392640296535319 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS UPN48_class_I_Rep_1 5 583.76123046875 2 583.761289 1165.50803 0.4574 0.00026701 -0.11902 -6.948E-05 0.33838 0.00019754 583.7612037679276 68.575 0.49778 72.027 71.792 72.29 3.4517 73 43 2 0 0 0 0.026395 2 15812 15812;15849 59.368 33.969 1 193550 29557 3722 18725 18736 34283;34284 34283 -0.0681084017332978 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MSMS UPN48_class_I_Rep_1 5 583.7614135742188 2 583.761289 1165.50803 NaN NaN NaN NaN NaN NaN NaN 68.338 1 71.79 71.29 72.29 3.4517 0 0 0 0.25702 1 15773 15773 13.042 4.4492 1 29558 3722 18725 18736 34285 34285 -0.0681084017332978 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS UPN48_class_I_Rep_2 6 583.7608032226562 2 583.761289 1165.50803 0.48743 0.00028454 -0.21916 -0.00012794 0.26826 0.0001566 583.7611753551057 68.471 0.52012 71.979 71.699 72.219 3.5083 65 48 2 0 0 0 0.013215 2 15760 15760;15805 67.838 48.581 1 102550 29559 3722 18725 18736 34286;34287 34286 -0.0681084017332978 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS UPN48_class_I_Rep_3 7 583.7612915039062 2 583.761289 1165.50803 0.55594 0.00032453 -0.23322 -0.00013615 0.32272 0.00018839 583.7611446365404 68.321 0.58171 71.83 71.604 72.186 3.5094 89 49 2 0 0 0 0.013215 6 15690 15607;15613;15620;15649;15690;15733 67.838 48.581 1 169180 29560 3722 18725 18736 34288;34289;34290;34291;34292;34293 34292 -0.0681084017332978 NYSYWAYLSI 10 Unmodified _NYSYWAYLSI_ 0 0 0 HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|33|1|sense HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|33|1|sense HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|33|1|sense MSMS UPN48_class_I_Rep_3 7 640.3040161132812 2 640.303321 1278.59209 NaN NaN NaN NaN NaN NaN NaN 68.844 1 72.354 71.854 72.854 3.5094 0 0 0 0.53105 1 15814 15814 3.5965 1.5367 1 29561 8318 18726 18737 34294 34294 -0.03606309076440084 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENSG00000166986|ENST00000262027|MARS1 ENST00000548630.1_1_12:57906018-57906171:+|nuORF ENST00000548630.1_1_12:57906018-57906171:+|nuORF MSMS UPN48_class_I_Rep_1 5 530.7848510742188 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 61.922 1 65.389 64.889 65.889 3.4678 0 0 0 0.25702 1 13817 13817 13.042 4.4492 1 29562 4283 18727 18738 34295 34295 0.049100294773325004 NYTRFDDWYLW 11 Unmodified _NYTRFDDWYLW_ 0 0 0 nc|ENSG00000088298|Q9BV94-2|EDEM2;ENSG00000088298|ENST00000374492|EDEM2 nc|ENSG00000088298|Q9BV94-2|EDEM2 nc|ENSG00000088298|Q9BV94-2|EDEM2 MULTI-MSMS UPN48_class_I_Rep_1 5 526.9061889648438 3 526.905253 1577.69393 0.37613 0.00019818 1.2789 0.00067384 1.655 0.00087203 526.9059646698067 29.169 0.46492 32.719 32.546 33.011 3.5499 75 48 2 0 0 0 0.64331 1 4032 4032 3.8459 2.6311 1 183550 29563 1307 18728 18739 34296 34296 -0.0718106272465775 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1 ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENST00000278882.8_1_20:29623179-29633907:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 580.8096923828125 2 580.808574 1159.60259 0.44119 0.00025625 -0.46585 -0.00027057 -0.024651 -1.4317E-05 580.8082756491807 37.844 0.7365 41.349 41.024 41.761 3.5052 119 72 2 0 0 0 0.13244 7 6482 6448;6482;6487;6525;6528;6559;6570 27.629 8.3718 1 150940 29564 1899 18729 18740 34297;34298;34299;34300;34301;34302;34303 34298 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1 ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENST00000278882.8_1_20:29623179-29633907:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 580.8085327148438 2 580.808574 1159.60259 0.44455 0.0002582 -0.3679 -0.00021368 0.076651 4.452E-05 580.8083523648359 37.376 0.74821 41.078 40.865 41.613 3.7021 134 78 2 0 0 0 0.081756 7 6397 6362;6397;6404;6437;6476;6482;6497 38.176 9.094 1 146000 29565 1899 18729 18740 34304;34305;34306;34307;34308;34309;34310 34305 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENSG00000109536|ENST00000226798|FRG1 ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENST00000278882.8_1_20:29623179-29633907:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 580.8091430664062 2 580.808574 1159.60259 0.3971 0.00023064 -0.38795 -0.00022533 0.0091525 5.3158E-06 580.8082982390744 37.536 0.66143 41.199 40.899 41.561 3.663 130 68 2 0 0 0 0.081756 7 6319 6277;6312;6319;6355;6390;6421;6429 38.176 12.728 1 151830 29566 1899 18729 18740 34311;34312;34313;34314;34315;34316;34317 34313 0.029177183686670105 NYVKTFMYI 9 Unmodified _NYVKTFMYI_ 0 0 0 L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|121|3|anti-sense L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|121|3|anti-sense L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|121|3|anti-sense MSMS UPN48_class_I_Rep_3 7 589.7994384765625 2 589.79936 1177.58417 NaN NaN NaN NaN NaN NaN NaN 32.526 1 36.215 35.715 36.715 3.6896 0 0 0 0.39428 1 4955 4955 2.0598 0 1 29567 11587 18730 18741 34318 34318 0.0024784040247141093 NYVNFWEPH 9 Unmodified _NYVNFWEPH_ 0 0 0 REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF REV__ENST00000493961.5_1_10:72642146-72645644:-|nuORF MSMS UPN47_class_I_Rep_3 4 603.3302612304688 2 603.272355 1204.53016 NaN NaN NaN NaN NaN NaN NaN 28.692 1 32.026 31.526 32.526 3.3338 0 0 0 0.39428 1 4536 4536 2.0598 0 1 + 29568 19025 18731 18742 34319 34319 -0.06392615704908167 NYVPSAAVIEV 11 Unmodified _NYVPSAAVIEV_ 0 0 0 ENST00000368886.9_1_10:124754038-124754206:-|nuORF ENST00000368886.9_1_10:124754038-124754206:-|nuORF ENST00000368886.9_1_10:124754038-124754206:-|nuORF MSMS UPN48_class_I_Rep_1 5 581.3111572265625 2 581.311146 1160.60774 NaN NaN NaN NaN NaN NaN NaN 37.638 1 41.143 40.643 41.643 3.5052 0 0 0 0.36307 1 6423 6423 8.1555 0.8663 1 29569 6370 18732 18743 34320 34320 0.033859774405982535 NYVQAVEEF 9 Unmodified _NYVQAVEEF_ 0 0 0 ENST00000529239.1_1_8:61850915-61851251:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP ENST00000529239.1_1_8:61850915-61851251:-|nuORF ENST00000529239.1_1_8:61850915-61851251:-|nuORF MSMS UPN48_class_I_Rep_1 5 549.7484130859375 2 549.758746 1097.50294 NaN NaN NaN NaN NaN NaN NaN 62.9 1 66.363 65.863 66.863 3.4625 0 0 0 0.31276 1 14116 14116 10.074 2.1638 1 29570 2775 18733 18744 34321 34321 -0.04191144035939942 NYVQAVEEF 9 Unmodified _NYVQAVEEF_ 0 0 0 ENST00000529239.1_1_8:61850915-61851251:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP ENST00000529239.1_1_8:61850915-61851251:-|nuORF ENST00000529239.1_1_8:61850915-61851251:-|nuORF MSMS UPN48_class_I_Rep_1 5 549.7600708007812 2 549.758746 1097.50294 NaN NaN NaN NaN NaN NaN NaN 62.947 1 66.41 65.91 66.91 3.4625 0 0 0 0.22485 1 14130 14130 14.838 6.245 1 29571 2775 18733 18744 34322 34322 -0.04191144035939942 NYVQAVEEF 9 Unmodified _NYVQAVEEF_ 0 0 0 ENST00000529239.1_1_8:61850915-61851251:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP ENST00000529239.1_1_8:61850915-61851251:-|nuORF ENST00000529239.1_1_8:61850915-61851251:-|nuORF MSMS UPN48_class_I_Rep_1 5 549.750244140625 2 549.758746 1097.50294 NaN NaN NaN NaN NaN NaN NaN 63.006 1 66.468 65.968 66.968 3.4625 0 0 0 0.25702 1 14148 14148 13.042 5.7532 1 29572 2775 18733 18744 34323 34323 -0.04191144035939942 NYVQAVEEF 9 Unmodified _NYVQAVEEF_ 0 0 0 ENST00000529239.1_1_8:61850915-61851251:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP ENST00000529239.1_1_8:61850915-61851251:-|nuORF ENST00000529239.1_1_8:61850915-61851251:-|nuORF MSMS UPN48_class_I_Rep_2 6 549.7493286132812 2 549.758746 1097.50294 NaN NaN NaN NaN NaN NaN NaN 62.79 1 66.263 65.763 66.763 3.4738 0 0 0 0.18866 1 14063 14063 17.113 2.2746 1 29573 2775 18733 18744 34324 34324 -0.04191144035939942 NYVQVNRR 8 Unmodified _NYVQVNRR_ 0 0 0 REV__L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|144|2|anti-sense REV__L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|144|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 524.7861938476562 2 524.785964 1047.55738 0.31339 0.00016446 -0.24398 -0.00012804 0.069405 3.6423E-05 524.7860596758766 44.225 0.4141 47.986 47.786 48.2 3.7617 40 31 2 0 0 0 0.82752 1 8434 8434 4.756 1.1595 1 113900 + 29574 27295 18734 18745 34325 34325 0.03549912626135665 NYVRSIFVY 9 Unmodified _NYVRSIFVY_ 0 0 0 REV__L1MB8_dup7082|chr8:38800236-38801901:-|1.4173901825711948|0.0551845027934472|4.68|150.0|74|1|anti-sense REV__L1MB8_dup7082|chr8:38800236-38801901:-|1.4173901825711948|0.0551845027934472|4.68|150.0|74|1|anti-sense MSMS UPN48_class_I_Rep_2 6 580.80810546875 2 580.808574 1159.60259 NaN NaN NaN NaN NaN NaN NaN 37.128 1 40.83 40.33 41.33 3.7021 0 0 0 0.32573 1 6320 6320 9.3831 2.66 1 + 29575 26431 18735 18746 34326 34326 0.02917718368689748 NYVTPPFKF 9 Unmodified _NYVTPPFKF_ 0 0 0 REV__L1MA6_dup2868|chr9:41396923-41397503:-|1.4098154484443917|0.0279725900500268|5.66|150.0|31|2|anti-sense REV__L1MA6_dup2868|chr9:41396923-41397503:-|1.4098154484443917|0.0279725900500268|5.66|150.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 556.79443359375 2 556.792392 1111.57023 NaN NaN NaN NaN NaN NaN NaN 66.214 1 69.666 69.166 70.166 3.4516 0 0 0 0.35339 1 15125 15125 7.9102 2.1497 1 + 29576 25453 18736 18747 34327 34327 0.01890930965669213 NYVVMHHA 8 Unmodified _NYVVMHHA_ 0 0 0 L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|8|1|sense L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|8|1|sense L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 485.7718811035156 2 485.731812 969.449071 NaN NaN NaN NaN NaN NaN NaN 27.516 1 31.282 30.782 31.782 3.7662 0 0 0 0.40604 1 4105 4105 2.5775 0 1 29577 11042 18737 18748 34328 34328 -0.03687594948644346 NYVVYFRIS 9 Unmodified _NYVVYFRIS_ 0 0 0 L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.3086547851562 2 580.808574 1159.60259 0.44119 0.00025625 -0.46585 -0.00027057 -0.024651 -1.4317E-05 580.8082756491807 37.844 0.7365 41.349 41.024 41.761 3.5052 119 72 2 0 0 0 0.43153 1 6587 6587 6.2058 0 1 150940 29578 14923 18738 18749 34329 34329 0.029177183686670105 NYVVYFRIS 9 Unmodified _NYVVYFRIS_ 0 0 0 L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense MSMS UPN48_class_I_Rep_1 5 580.808349609375 2 580.808574 1159.60259 NaN NaN NaN NaN NaN NaN NaN 38.334 1 41.839 41.339 42.339 3.5052 0 0 0 0.37692 1 6629 6629 6.2058 0 1 29579 14923 18738 18749 34330 34330 0.029177183686670105 NYVVYFRIS 9 Unmodified _NYVVYFRIS_ 0 0 0 L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.31103515625 2 580.808574 1159.60259 0.44455 0.0002582 -0.3679 -0.00021368 0.076651 4.452E-05 580.8083523648359 37.376 0.74821 41.078 40.865 41.613 3.7021 134 78 2 0 0 0 0.37599 1 6513 6513 9.3831 0 1 146000 29580 14923 18738 18749 34331 34331 0.029177183686670105 NYVVYFRIS 9 Unmodified _NYVVYFRIS_ 0 0 0 L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|97|1|anti-sense MSMS UPN48_class_I_Rep_3 7 580.8073120117188 2 580.808574 1159.60259 NaN NaN NaN NaN NaN NaN NaN 37.964 1 41.623 41.123 42.123 3.6595 0 0 0 0.37692 1 6464 6464 6.2058 0 1 29581 14923 18738 18749 34332 34332 0.029177183686670105 NYWCHRTNWLW 11 Unmodified _NYWCHRTNWLW_ 0 0 0 REV__ENSG00000172292|ENST00000305747|CERS6 REV__ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS UPN47_class_I_Rep_2 3 526.9057006835938 3 526.906822 1577.69864 -0.26003 -0.00013701 -1.0134 -0.00053394 -1.2734 -0.00067095 526.9063723058158 28.752 0.6037 32.25 31.963 32.567 3.4986 87 47 3 0 0 0 0.66092 2 4474 4474;4514 2.2527 1.8445 1 92933 + 29582 20442 18739 18750 34333;34334 34333 -0.06710457062899877 NYWCHRTNWLW 11 Unmodified _NYWCHRTNWLW_ 0 0 0 REV__ENSG00000172292|ENST00000305747|CERS6 REV__ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS UPN47_class_I_Rep_3 4 526.9061889648438 3 526.906822 1577.69864 -0.28348 -0.00014937 -1.0672 -0.0005623 -1.3506 -0.00071166 526.9063312243388 29.084 0.79821 32.407 32.048 32.846 3.3235 89 65 2 0 0 0 0.66092 2 4617 4617;4682 2.2527 1.7982 1 92325 + 29583 20442 18739 18750 34335;34336 34335 -0.06710457062899877 NYYKVHVESK 10 Unmodified _NYYKVHVESK_ 0 0 0 L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|61|3|sense L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|61|3|sense L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|61|3|sense MSMS UPN48_class_I_Rep_3 7 633.8278198242188 2 633.827495 1265.64044 NaN NaN NaN NaN NaN NaN NaN 48.574 1 52.204 51.704 52.704 3.6301 0 0 0 0.53105 1 9659 9659 1.3295 0.13619 1 29584 14071 18740 18751 34337 34337 0.018241845634747733 PAAAHRPKS 9 Unmodified _PAAAHRPKS_ 0 0 0 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 MSMS UPN48_class_I_Rep_1 5 467.76568603515625 2 467.764501 933.514448 NaN NaN NaN NaN NaN NaN NaN 76.888 1 80.398 79.898 80.898 3.5102 0 0 0 0.39326 1 18276 18276 2.3027 0 1 29585 5076 18741 18752 34338 34338 0.04503142568705698 PAACELTEERS 11 Unmodified _PAACELTEERS_ 0 0 0 REV__MER52A_dup1251|chr17:80914119-80916662:+|1.893230001147713|0.095507797663245|4.31|151.0|79|2|anti-sense REV__MER52A_dup1251|chr17:80914119-80916662:+|1.893230001147713|0.095507797663245|4.31|151.0|79|2|anti-sense MSMS UPN47_class_I_Rep_3 4 603.2772216796875 2 603.276977 1204.5394 NaN NaN NaN NaN NaN NaN NaN 50.225 1 53.451 52.951 53.951 3.2262 0 0 0 0.38417 1 11077 11077 1.0715 0.38109 1 + 29586 31410 18742 18753 34339 34339 -0.054686352015551165 PAAGRRTP 8 Unmodified _PAAGRRTP_ 0 0 0 ENST00000558634.5_1_14:24615961-24617291:+|nuORF;ENST00000491351.5_1_14:24616897-24626527:+|nuORF ENST00000558634.5_1_14:24615961-24617291:+|nuORF ENST00000558634.5_1_14:24615961-24617291:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 413.2380676269531 2 413.238119 824.461684 0.016667 6.8872E-06 -0.012248 -5.0614E-06 0.0044184 1.8259E-06 413.23805988265553 80.999 0.78151 84.487 84.166 84.947 3.4874 203 81 3 0 0 0 0.82752 1 20265 20265 0.79363 0 1 805970 29587 7072 18743 18754 34340 34340 0.04243184505889985 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 428.26153564453125 2 428.261594 854.508634 0.12411 5.3151E-05 0.2237 9.5802E-05 0.34781 0.00014895 428.2618756352249 84.953 0.59561 84.953 84.693 85.289 0 182 57 5 0 0 0 0.82752 1 20215 20215 5.2307 0 1 47641000 29588 8567 18744 18755 34341 34341 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 428.2615661621094 2 428.261594 854.508634 0.052226 2.2366E-05 0.14281 6.1162E-05 0.19504 8.3528E-05 428.26170926181067 81.857 1.2124 85.369 84.885 86.097 3.5122 474 139 5 0 0 0 0.82752 1 20355 20355 5.2307 0 1 10895000 29589 8567 18744 18755 34342 34342 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 428.2613220214844 2 428.261594 854.508634 -0.43932 -0.00018815 0.32928 0.00014102 -0.11004 -4.7125E-05 428.2617852543122 108.22 0.54692 111.76 111.51 112.06 3.5382 113 58 3 0 0 0 0.72333 1 26533 26533 5.2307 0 1 5494300 29590 8567 18744 18755 34343 34343 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 428.2614440917969 2 428.261594 854.508634 0.080545 3.4494E-05 0.085087 3.6439E-05 0.16563 7.0934E-05 428.2616950910733 81.493 1.6035 85.15 84.698 86.302 3.6567 479 202 5 0 0 0 0.82752 1 19273 19273 5.2307 0 1 17252000 29591 8567 18744 18755 34344 34344 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 428.261594 854.508634 0.12689 5.4341E-05 -0.60231 -0.00025795 -0.47542 -0.00020361 428.26152298835854 108.26 0.57262 111.9 111.57 112.14 3.6355 0.021205 -0.00054745 NaN 5.2307 135 51 3 NaN NaN NaN NaN 0 NaN NaN 0 2487800 29592 8567 18744 18755 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 428.261594 854.508634 -0.38873 -0.00016648 0.59933 0.00025667 0.2106 9.0191E-05 428.26189245965793 81.905 1.1072 85.289 84.792 85.899 3.3839 0.13955 7.6155E-05 NaN 5.2307 483 131 5 NaN NaN NaN NaN 0 NaN NaN 0 12438000 29593 8567 18744 18755 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 428.261594 854.508634 -0.46998 -0.00020127 0.70325 0.00030117 0.23327 9.9901E-05 428.26192922077416 81.882 1.6366 85.205 84.748 86.384 3.3231 0.055858 0.00016516 NaN 5.2307 583 189 5 NaN NaN NaN NaN 0 NaN NaN 0 10682000 29594 8567 18744 18755 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 428.261594 854.508634 -0.089476 -3.8319E-05 -0.17915 -7.6722E-05 -0.26862 -0.00011504 428.2617292446394 108.39 0.21531 112.02 111.91 112.12 3.6313 0.14623 -0.00018501 NaN 5.2307 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1335500 29595 8567 18744 18755 0.07556044057048439 PAAIARRT 8 Unmodified _PAAIARRT_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 428.261594 854.508634 0.083964 3.5959E-05 -0.051334 -2.1984E-05 0.03263 1.3974E-05 428.2614654402521 108.23 0.63069 111.9 111.64 112.27 3.6746 0.029465 -7.5529E-05 NaN 5.2307 113 69 2 NaN NaN NaN NaN 0 NaN NaN 0 6695400 29596 8567 18744 18755 0.07556044057048439 PAAIKKLYQ 9 Unmodified _PAAIKKLYQ_ 0 0 0 ENST00000483659.5_1_2:85622736-85628768:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG ENST00000483659.5_1_2:85622736-85628768:-|nuORF ENST00000483659.5_1_2:85622736-85628768:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.3142700195312 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 91.372 1 94.773 94.273 95.273 3.401 0 0 0 0.39428 1 22858 22858 2.0598 0.40713 1 29597 872 18745 18756 34345 34345 0.10343210236624145 PAAKEERR 8 Unmodified _PAAKEERR_ 0 0 0 REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 478.76690673828125 2 478.76724 955.519927 -0.34203 -0.00016376 0.13701 6.5597E-05 -0.20502 -9.8158E-05 478.76720683952067 12.902 0.28758 12.902 12.777 13.064 0 49 24 3 0 0 0 0.82752 2 223 223;262 2.5775 1.7838 1 176470 + 29598 23239 18746 18757 34346;34347 34346 0.04038821360518341 PAAKKKKKK 9 Unmodified _PAAKKKKKK_ 0 0 0 L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|40|2|sense L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|40|2|sense L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|40|2|sense MSMS UPN47_class_I_Rep_2 3 513.8424072265625 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 18.481 1 21.871 21.371 22.371 3.3898 0 0 0 0.40038 1 1569 1569 0.6015 0 1 29599 8610 18747 18758 34348 34348 0.19550884635896182 PAALPPARR 9 Unmodified _PAALPPARR_ 0 0 0 ENST00000417816.2_1_10:21462761-21463055:-|nuORF ENST00000417816.2_1_10:21462761-21463055:-|nuORF ENST00000417816.2_1_10:21462761-21463055:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 474.7901611328125 2 474.790518 947.566484 0.23416 0.00011118 0.15759 7.4822E-05 0.39175 0.000186 474.7904881010547 107.8 0.19978 111.47 111.39 111.59 3.6724 45 13 4 0 0 0 0.45688 1 26466 26466 4.756 0 1 96541000 29600 6662 18748 18759 34349 34349 0.09060305982472983 PAALRIAHRA 10 Unmodified _PAALRIAHRA_ 0 0 0 ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2 ENST00000561487.1_1_16:2577913-2578724:+|nuORF ENST00000561487.1_1_16:2577913-2578724:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 538.3272705078125 2 538.327799 1074.64105 0.356 0.00019165 -1.2895 -0.00069416 -0.93348 -0.00050252 538.3269985580498 96.737 0.17777 96.737 96.671 96.849 0 24 15 2 0 0 0 0.56309 1 23529 23529 1.6526 0 1 829170 29601 3916 18749 18760 34350 34350 0.10671068793840277 PAALRIAHRA 10 Unmodified _PAALRIAHRA_ 0 0 0 ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2 ENST00000561487.1_1_16:2577913-2578724:+|nuORF ENST00000561487.1_1_16:2577913-2578724:+|nuORF MSMS UPN46_class_I_Rep_3 1 538.326904296875 2 538.327799 1074.64105 NaN NaN NaN NaN NaN NaN NaN 97.178 1 97.178 96.678 97.678 0 0 0 0 0.53105 1 23640 23640 1.6526 0 1 29602 3916 18749 18760 34351 34351 0.10671068793840277 PAALRIAHRA 10 Unmodified _PAALRIAHRA_ 0 0 0 ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2 ENST00000561487.1_1_16:2577913-2578724:+|nuORF ENST00000561487.1_1_16:2577913-2578724:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 538.327799 1074.64105 0.50357 0.00027109 -1.5418 -0.00082999 -1.0382 -0.0005589 538.3269445730899 93.153 0.21642 96.889 96.722 96.939 3.736 0.10745 -3.073E-05 NaN 1.6526 39 29 2 NaN NaN NaN NaN 0 NaN NaN 0 118770 29603 3916 18749 18760 0.10671068793840277 PAALRIAHRA 10 Unmodified _PAALRIAHRA_ 0 0 0 ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2 ENST00000561487.1_1_16:2577913-2578724:+|nuORF ENST00000561487.1_1_16:2577913-2578724:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 538.327799 1074.64105 0.35632 0.00019182 -1.3214 -0.00071133 -0.96505 -0.00051951 538.3268985411254 92.977 0.093979 96.601 96.531 96.625 3.624 -0.18072 0.00020659 NaN 1.6526 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 155960 29604 3916 18749 18760 0.10671068793840277 PAALRIAHRA 10 Unmodified _PAALRIAHRA_ 0 0 0 ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2 ENST00000561487.1_1_16:2577913-2578724:+|nuORF ENST00000561487.1_1_16:2577913-2578724:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 538.327799 1074.64105 0.57789 0.00031109 -1.7783 -0.00095728 -1.2004 -0.00064619 538.326857428907 93.022 0.10266 96.9 96.863 96.965 3.8782 0.11828 -0.00028532 NaN 1.6526 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 115160 29605 3916 18749 18760 0.10671068793840277 PAARNHVLL 9 Unmodified _PAARNHVLL_ 0 0 0 REV__ENSG00000075643|ENST00000261326|MOCOS REV__ENSG00000075643|ENST00000261326|MOCOS MSMS UPN47_class_I_Rep_2 3 495.79632568359375 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 79.545 1 82.9 82.4 83.4 3.3554 0 0 0 0.4007 1 19807 19807 0.52476 0 1 + 29606 17858 18750 18761 34352 34352 0.08184288636891779 PAARREKLH 9 Unmodified _PAARREKLH_ 0 0 0 L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|66|3|sense L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|66|3|sense L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|66|3|sense MSMS UPN46_class_I_Rep_3 1 539.754638671875 2 539.317432 1076.62031 NaN NaN NaN NaN NaN NaN NaN 66.064 1 66.064 65.564 66.564 0 0 0 0 0.40098 1 14968 14968 0.45834 0 1 29607 13051 18751 18762 34353 34353 0.08506478414187768 PAATRTLLL 9 Unmodified _PAATRTLLL_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MSMS UPN47_class_I_Rep_3 4 478.3003845214844 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 29.028 1 32.351 31.851 32.851 3.3235 0 0 0 0.3967 1 4635 4635 1.4819 0 1 29608 4219 18752 18763 34354 34354 0.10710637202578255 PACRYDWG 8 Unmodified _PACRYDWG_ 0 0 0 REV__AluSx_dup45765|chr7:101831293-101831591:-|1.440630127501683|0.0340668909819217|5.4|151.0|16|2|anti-sense REV__AluSx_dup45765|chr7:101831293-101831591:-|1.440630127501683|0.0340668909819217|5.4|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 484.2060241699219 2 484.20817 966.401786 NaN NaN NaN NaN NaN NaN NaN 19.888 1 23.5 23 24 3.6118 0 0 0 0.40753 1 1905 1905 0.6015 0.076735 1 + 29609 17057 18753 18764 34355 34355 -0.08275874219657453 PAEAPVRLL 9 Unmodified _PAEAPVRLL_ 0 0 0 REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 MULTI-MSMS UPN47_class_I_Rep_2 3 483.29278564453125 2 483.292559 964.570566 -0.022184 -1.0722E-05 -0.18654 -9.0154E-05 -0.20873 -0.00010088 483.29235219714735 45.051 0.60691 48.406 48.223 48.83 3.3556 54 35 2 0 0 0 0.47197 1 9515 9515 3.5965 1.2938 1 92509 + 29610 18646 18754 18765 34356 34356 0.08686350685513844 PAFFCFPFPC 10 Unmodified _PAFFCFPFPC_ 0 0 0 L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|340|3|anti-sense L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|340|3|anti-sense L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|340|3|anti-sense MSMS UPN47_class_I_Rep_3 4 588.2550659179688 2 588.256274 1174.49799 NaN NaN NaN NaN NaN NaN NaN 62.954 1 66.123 65.623 66.623 3.1698 0 0 0 0.53105 1 14961 14961 1.8442 0.19162 1 29611 14372 18755 18766 34357 34357 -0.08227442703901033 PAFLKNVSII 10 Unmodified _PAFLKNVSII_ 0 0 0 REV__L1M4c_dup1749|chr9:93000002-93001363:-|1.8417568243380849|0.0289285407371831|5.99|151.0|90|3|anti-sense REV__L1M4c_dup1749|chr9:93000002-93001363:-|1.8417568243380849|0.0289285407371831|5.99|151.0|90|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 551.3368530273438 2 551.336967 1100.65938 0.58912 0.0003248 -0.13726 -7.5677E-05 0.45186 0.00024913 551.3368588149978 57.363 0.30806 60.857 60.736 61.044 3.4942 39 25 2 0 0 0 0.54822 1 12431 12431 5.7319 0 1 141010 + 29612 24582 18756 18767 34358 34358 0.11307765925175772 PAFQKIELY 9 Unmodified _PAFQKIELY_ 0 0 0 REV__L1PA16_dup6315|chr7:110714895-110716706:-|1.01515802892525|0.0142527203138965|6.15|151.0|53|3|sense REV__L1PA16_dup6315|chr7:110714895-110716706:-|1.01515802892525|0.0142527203138965|6.15|151.0|53|3|sense MSMS UPN47_class_I_Rep_3 4 554.8335571289062 2 554.8055 1107.59645 NaN NaN NaN NaN NaN NaN NaN 70.439 1 73.65 73.15 74.15 3.2113 0 0 0 0.38639 1 17230 17230 3.9444 1.8846 1 + 29613 29399 18757 18768 34359 34359 0.04695200137143729 PAFYNYSM 8 Unmodified _PAFYNYSM_ 0 0 0 REV__L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|126|3|anti-sense REV__L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|126|3|anti-sense MSMS UPN47_class_I_Rep_1 2 496.7122802734375 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 57.246 1 60.703 60.203 61.203 3.4572 0 0 0 0.40738 1 13134 13134 0.79363 0 1 + 29614 24345 18758 18769 34360 34360 -0.08509525653983019 PAFYNYSM 8 Unmodified _PAFYNYSM_ 0 0 0 REV__L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|126|3|anti-sense REV__L1M4_dup10043|chr9:95950032-95951888:+|3.2504888212787213|0.1997592698585544|4.02|151.0|126|3|anti-sense MSMS UPN48_class_I_Rep_2 6 496.7125244140625 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 41.806 1 45.557 45.057 46.057 3.7508 0 0 0 0.40738 1 7671 7671 0.79363 0 1 + 29615 24345 18758 18769 34361 34361 -0.08509525653983019 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN47_class_I_Rep_1 2 472.72930908203125 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.431 1 95.136 94.636 95.636 3.7053 0 0 0 0.53105 1 22817 22817 6.7232 0.96273 1 29616 7283 18759 18770 34362 34362 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN47_class_I_Rep_1 2 472.7292175292969 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.647 1 95.353 94.853 95.853 3.7053 0 0 0 0.53105 1 22863 22863 6.7232 0.96273 1 29617 7283 18759 18770 34363 34363 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN47_class_I_Rep_1 2 472.72955322265625 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.794 1 95.499 94.999 95.999 3.7053 0 0 0 0.53105 1 22891 22891 6.7232 1.4925 1 29618 7283 18759 18770 34364 34364 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN47_class_I_Rep_2 3 472.72900390625 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.354 1 94.815 94.315 95.315 3.4613 0 0 0 0.53105 1 22618 22618 6.7232 1.4925 1 29619 7283 18759 18770 34365 34365 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.72900390625 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.166 1 94.792 94.292 95.292 3.626 0 0 0 0.53105 1 21908 21908 6.7232 0.96273 1 29620 7283 18759 18770 34366 34366 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.7292175292969 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 90.971 1 94.727 94.227 95.227 3.7554 0 0 0 0.53105 1 21659 21659 6.7232 0.96273 1 29621 7283 18759 18770 34367 34367 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.7295227050781 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.546 1 95.302 94.802 95.802 3.7554 0 0 0 0.53105 1 21796 21796 6.7232 0.96273 1 29622 7283 18759 18770 34368 34368 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.7294616699219 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.042 1 94.906 94.406 95.406 3.8634 0 0 0 0.53105 1 21589 21589 6.7232 0.96273 1 29623 7283 18759 18770 34369 34369 -0.034036650333405305 PAGAGSGWLE 10 Unmodified _PAGAGSGWLE_ 0 0 0 ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF ENST00000529225.5_1_11:111797899-111800548:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.7294616699219 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 91.566 1 95.429 94.929 95.929 3.8634 0 0 0 0.53105 1 21716 21716 6.7232 0.96273 1 29624 7283 18759 18770 34370 34370 -0.034036650333405305 PAGKLARW 8 Unmodified _PAGKLARW_ 0 0 0 REV__ENST00000303460.4_1_12:54379677-54382961:+|nuORF REV__ENST00000303460.4_1_12:54379677-54382961:+|nuORF MSMS UPN48_class_I_Rep_1 5 449.7675476074219 2 449.766512 897.518471 NaN NaN NaN NaN NaN NaN NaN 74.832 1 78.322 77.822 78.822 3.49 0 0 0 0.40738 1 17700 17700 0.79363 0 1 + 29625 21678 18760 18771 34371 34371 0.06561232062415456 PAGRPHFNW 9 Unmodified _PAGRPHFNW_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.26953125 2 541.26995 1080.52535 0.39752 0.00021516 0.24958 0.00013509 0.6471 0.00035025 541.2701241647054 87.429 0.36426 91.047 90.824 91.188 3.6187 51 42 2 0 0 0 0.48643 1 20922 20922 2.0598 0 1 78988 + 29626 30238 18761 18772 34372 34372 -0.011694550570155116 PAGRPHFNW 9 Unmodified _PAGRPHFNW_ 0 0 0 REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense REV__L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|372|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 541.26995 1080.52535 0.55177 0.00029866 0.42633 0.00023076 0.9781 0.00052942 541.269969725822 87.246 0.16731 91.036 90.921 91.088 3.7905 -0.0055689 0.00010875 NaN 2.0598 30 20 3 NaN NaN NaN NaN 0 NaN NaN 0 73942 + 29627 30238 18761 18772 -0.011694550570155116 PAHLRYLL 8 Unmodified _PAHLRYLL_ 0 0 0 nc|ENSG00000183307|Q9BXQ6-2|TMEM121B;ENSG00000183307|ENST00000331437|TMEM121B nc|ENSG00000183307|Q9BXQ6-2|TMEM121B nc|ENSG00000183307|Q9BXQ6-2|TMEM121B MSMS UPN48_class_I_Rep_1 5 491.7967834472656 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.47 1 62.95 62.45 63.45 3.4801 0 0 0 0.39624 1 13070 13070 9.3474 0 1 29628 4993 18762 18773 34373 34373 0.08446074267999393 PAHLRYLL 8 Unmodified _PAHLRYLL_ 0 0 0 nc|ENSG00000183307|Q9BXQ6-2|TMEM121B;ENSG00000183307|ENST00000331437|TMEM121B nc|ENSG00000183307|Q9BXQ6-2|TMEM121B nc|ENSG00000183307|Q9BXQ6-2|TMEM121B MSMS UPN48_class_I_Rep_2 6 491.7957458496094 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.351 1 62.837 62.337 63.337 3.4868 0 0 0 0.39624 1 13011 13011 9.3474 0.75416 1 29629 4993 18762 18773 34374 34374 0.08446074267999393 PAHVAAHF 8 Unmodified _PAHVAAHF_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MULTI-SECPEP UPN47_class_I_Rep_3 4 425.7525634765625 2 425.221937 848.429321 -0.52126 -0.00022165 -0.15194 -6.4609E-05 -0.6732 -0.00028626 425.22181899301927 79.393 0.54869 82.688 82.52 83.069 3.295 89 50 2 0 0 0 0.72333 1 19893 19893 2.8892 0 1 255480 29630 2353 18763 18774 34375 34375 -0.0009560289711316727 PAIAWASRVA 10 Unmodified _PAIAWASRVA_ 0 0 0 HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|119|1|anti-sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|119|1|anti-sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|119|1|anti-sense MSMS UPN48_class_I_Rep_2 6 521.294921875 2 521.295633 1040.57671 NaN NaN NaN NaN NaN NaN NaN 107.8 1 111.48 110.98 111.98 3.6783 0 0 0 0.53105 1 25506 25506 5.2969 0 1 29631 8313 18764 18775 34376 34376 0.0580486891703913 PAIFNSHVKT 10 Unmodified _PAIFNSHVKT_ 0 0 0 REV__L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|32|1|sense REV__L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|32|1|sense MSMS UPN46_class_I_Rep_3 1 557.5297241210938 2 557.306198 1112.59784 NaN NaN NaN NaN NaN NaN NaN 58.075 1 58.075 57.575 58.575 0 0 0 0 0.53105 1 12763 12763 1.6526 0 1 + 29632 27615 18765 18776 34377 34377 0.04604834225892773 PAIQEALKG 9 Unmodified _PAIQEALKG_ 0 0 0 L1MB7_dup13640|chr10:38028767-38029442:-|2.125517651169133|0.061310226663685|5.12|151.0|4|1|sense L1MB7_dup13640|chr10:38028767-38029442:-|2.125517651169133|0.061310226663685|5.12|151.0|4|1|sense L1MB7_dup13640|chr10:38028767-38029442:-|2.125517651169133|0.061310226663685|5.12|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 463.7684326171875 2 463.768917 925.523281 0.055492 2.5735E-05 -0.96717 -0.00044854 -0.91168 -0.00042281 463.7682543568523 107.76 0.1123 111.39 111.33 111.44 3.6313 19 10 3 0 0 0 0.43982 1 25988 25988 5.7319 0 1 7141400 29633 10701 18766 18777 34378 34378 0.05754071414526152 PAIVINRAR 9 Unmodified _PAIVINRAR_ 0 0 0 nc|ENSG00000127125|Q9HAB8-2|PPCS;ENSG00000127125|ENST00000372561|PPCS nc|ENSG00000127125|Q9HAB8-2|PPCS nc|ENSG00000127125|Q9HAB8-2|PPCS MULTI-SECPEP UPN48_class_I_Rep_1 5 505.3168640136719 2 505.3169 1008.61925 0.20884 0.00010553 0.22312 0.00011274 0.43196 0.00021828 505.31694156109546 107.81 0.43877 111.44 111.35 111.79 3.6313 89 38 5 0 0 0 0.11598 1 26056 26056 7.2892 0 1 73280000 29634 2564 18767 18778 34379 34379 0.11528264045273318 PAIYKLKEHL 10 Unmodified _PAIYKLKEHL_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-MSMS UPN46_class_I_Rep_3 1 606.3615112304688 2 606.360973 1210.70739 0.46325 0.00028089 0.30812 0.00018683 0.77136 0.00046772 606.3610410207184 35.345 0.11003 35.345 35.252 35.362 0 19 7 4 0 0 0 0.56118 1 6424 6424 2.9952 0.26005 1 823110 29635 5096 18768 18779 34380 34380 0.11046839845243994 PAKDVRLKKR 10 Unmodified _PAKDVRLKKR_ 0 0 0 REV__ENSG00000137310|ENST00000376257|TCF19 REV__ENSG00000137310|ENST00000376257|TCF19 MSMS UPN46_class_I_Rep_3 1 404.2632141113281 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 73.622 1 73.622 73.122 74.122 0 0 0 0 0.53105 1 17073 17073 0.15932 0 1 + 29636 19226 18769 18780 34381 34381 0.17048155579254853 PAKDVRLKKR 10 Unmodified _PAKDVRLKKR_ 0 0 0 REV__ENSG00000137310|ENST00000376257|TCF19 REV__ENSG00000137310|ENST00000376257|TCF19 MSMS UPN46_class_I_Rep_3 1 404.2630310058594 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 101.48 1 101.48 100.98 101.98 0 0 0 0 0.53105 1 24760 24760 0.15932 0 1 + 29637 19226 18769 18780 34382 34382 0.17048155579254853 PAKGLRSRPAR 11 Unmodified _PAKGLRSRPAR_ 0 0 0 ENSG00000180535|ENST00000609256|BHLHA15 ENSG00000180535|ENST00000609256|BHLHA15 ENSG00000180535|ENST00000609256|BHLHA15 MSMS UPN47_class_I_Rep_1 2 604.86865234375 2 604.870363 1207.72617 NaN NaN NaN NaN NaN NaN NaN 97.551 1 101.34 100.84 101.84 3.7861 0 0 0 0.38417 1 24171 24171 0.96228 0.36078 1 29638 4892 18770 18781 34383 34383 0.13061814259640414 PAKGMLRK 8 Unmodified _PAKGMLRK_ 0 0 0 L1ME3A_dup14122|chr18:12715807-12716208:-|1.2761479578494606|0.2096309759243498|2.61|151.0|2|1|sense L1ME3A_dup14122|chr18:12715807-12716208:-|1.2761479578494606|0.2096309759243498|2.61|151.0|2|1|sense L1ME3A_dup14122|chr18:12715807-12716208:-|1.2761479578494606|0.2096309759243498|2.61|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 450.7766418457031 2 450.776022 899.537492 NaN NaN NaN NaN NaN NaN NaN 85.192 1 88.616 88.116 89.116 3.4232 0 0 0 0.40746 1 21203 21203 0.69038 0 1 29639 12645 18771 18782 34384 34384 0.08370445361822476 PAKKKKKKK 9 Unmodified _PAKKKKKKK_ 0 0 0 Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|19|1|sense Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|19|1|sense Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|19|1|sense MSMS UPN46_class_I_Rep_3 1 542.3897094726562 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 26.352 1 26.352 25.852 26.852 0 0 0 0 0.4007 1 3755 3755 0.52476 0 1 29640 33172 18772 18783 34385 34385 0.22711146561300666 PAKRLTTR 8 Unmodified _PAKRLTTR_ 0 0 0 L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense MSMS UPN47_class_I_Rep_2 3 471.7962341308594 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 28.792 1 32.291 31.791 32.791 3.4986 0 0 0 0.40746 1 4518 4518 0.69038 0 1 29641 9710 18773 18784 34386 34386 0.1039228863688777 PAKRLTTR 8 Unmodified _PAKRLTTR_ 0 0 0 L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense MSMS UPN47_class_I_Rep_3 4 471.79595947265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 82.495 1 85.832 85.332 86.332 3.337 0 0 0 0.40738 1 20675 20675 0.79363 0 1 29642 9710 18773 18784 34387 34387 0.1039228863688777 PAKRLTTR 8 Unmodified _PAKRLTTR_ 0 0 0 L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|74|3|sense MSMS UPN48_class_I_Rep_3 7 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 113.78 1 117.43 116.93 117.93 3.6563 0 0 0 0.40625 1 27063 27063 2.3027 0 1 29643 9710 18773 18784 34388 34388 0.1039228863688777 PAKTRPKKG 9 Unmodified _PAKTRPKKG_ 0 0 0 REV__ENST00000498815.1_1_9:19376293-19376674:-|nuORF REV__ENST00000498815.1_1_9:19376293-19376674:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.79632568359375 2 491.811451 981.608348 NaN NaN NaN NaN NaN NaN NaN 59.483 1 63 62.5 63.5 3.5169 0 0 0 0.38639 1 12986 12986 3.9444 1.3669 1 + 29644 19216 18774 18785 34389 34389 0.11680861670981812 PAKVKPKN 8 Unmodified _PAKVKPKN_ 0 0 0 L1MD2_dup2963|chr5:43126175-43127183:-|5.446163433698879|0.1078063617926675|5.66|151.0|17|2|sense L1MD2_dup2963|chr5:43126175-43127183:-|5.446163433698879|0.1078063617926675|5.66|151.0|17|2|sense L1MD2_dup2963|chr5:43126175-43127183:-|5.446163433698879|0.1078063617926675|5.66|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 441.2972412109375 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 59.559 1 63.076 62.576 63.576 3.5169 0 0 0 0.40746 1 13009 13009 0.69038 0 1 29645 11987 18775 18786 34390 34390 0.10438385376653514 PALAQRTR 8 Unmodified _PALAQRTR_ 0 0 0 ENST00000476284.1_1_22:50964673-50968379:-|nuORF ENST00000476284.1_1_22:50964673-50968379:-|nuORF ENST00000476284.1_1_22:50964673-50968379:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 456.7724609375 2 456.772326 911.530098 0.19965 9.1193E-05 -0.23913 -0.00010923 -0.039484 -1.8035E-05 456.77217101254837 84.393 0.39995 84.393 84.314 84.714 0 72 37 2 0 0 0 0.82752 1 20092 20092 7.9102 0 1 729700 29646 6967 18776 18787 34391 34391 0.07079429085740685 PALARRRIDL 10 Unmodified _PALARRRIDL_ 0 0 0 REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF MSMS UPN46_class_I_Rep_3 1 590.866943359375 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 99.023 1 99.023 98.523 99.523 0 0 0 0 0.53105 1 24114 24114 5.7319 0.83484 1 + 29647 18519 18777 18788 34392 34392 0.13735296028130506 PALARRRIDL 10 Unmodified _PALARRRIDL_ 0 0 0 REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 590.8673095703125 2 590.867289 1179.72002 0.51572 0.00030472 0.74492 0.00044015 1.2606 0.00074487 590.8669930401338 94.698 0.05014 98.6 98.558 98.608 3.9016 8 5 2 0 0 0 0.56333 1 22444 22444 1.4819 0 1 84286 + 29648 18519 18777 18788 34393 34393 0.13735296028130506 PALARRRIDL 10 Unmodified _PALARRRIDL_ 0 0 0 REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF REV__ENST00000493732.5_1_3:132401545-132403622:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 590.867289 1179.72002 0.40978 0.00024212 -0.074576 -4.4065E-05 0.3352 0.00019806 590.8670065279211 94.855 0.040253 98.472 98.437 98.477 3.6167 -0.064071 -0.00013228 NaN 1.4819 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 79362 + 29649 18519 18777 18788 0.13735296028130506 PALASHRVRI 10 Unmodified _PALASHRVRI_ 0 0 0 AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense MSMS UPN48_class_I_Rep_1 5 560.33984375 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 100.13 1 103.74 103.24 104.24 3.6084 0 0 0 0.53105 1 24184 24184 3.2813 1.6287 1 29650 141 18778 18789 34394 34394 0.11267337965318802 PALASHRVRI 10 Unmodified _PALASHRVRI_ 0 0 0 AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.337646484375 2 560.340907 1118.66726 0.49458 0.00027714 -3.4984 -0.0019603 -3.0038 -0.0016832 560.3383423302255 101.12 0.18647 104.86 104.72 104.9 3.7417 36 25 2 0 0 0 0.56354 1 24003 24003 1.3295 0.63916 1 93562 29651 141 18778 18789 34395 34395 0.11267337965318802 PALASHRVRI 10 Unmodified _PALASHRVRI_ 0 0 0 AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3404541015625 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 99.858 1 103.71 103.21 104.21 3.8537 0 0 0 0.53105 1 23647 23647 3.2813 0 1 29652 141 18778 18789 34396 34396 0.11267337965318802 PALASHRVRI 10 Unmodified _PALASHRVRI_ 0 0 0 AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense AluJr_dup28355|chr6:135213993-135214289:+|1.7648192979460593|0.0338717595282259|5.7|150.0|17|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3404541015625 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 99.995 1 103.85 103.35 104.35 3.8537 0 0 0 0.53105 1 23679 23679 3.2813 0.54611 1 29653 141 18778 18789 34397 34397 0.11267337965318802 PALEKLRRS 9 Unmodified _PALEKLRRS_ 0 0 0 ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172 ENST00000507184.5_1_2:27680991-27709067:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 534.827392578125 2 535.327465 1068.64038 0.56868 0.00030443 0.81893 0.0004384 1.3876 0.00074282 535.3275543719416 108.5 0.16402 112.03 111.89 112.06 3.5333 21 16 2 0 0 0 0.1249 1 26328 26328 1.4819 0 1 1649300 29654 3057 18779 18790 34398 34398 0.10880229354143012 PALFVNLTL 9 Unmodified _PALFVNLTL_ 0 0 0 REV__LTR6B_dup69|chr8:8138446-8138890:+|1.103564604554502|0.1191653340093821|3.21|151.0|16|1|anti-sense REV__LTR6B_dup69|chr8:8138446-8138890:+|1.103564604554502|0.1191653340093821|3.21|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_3 4 494.2962951660156 2 494.29731 986.580068 NaN NaN NaN NaN NaN NaN NaN 61.02 1 64.185 63.685 64.685 3.1651 0 0 0 0.37476 1 14366 14366 6.7232 0 1 + 29655 30994 18780 18791 34399 34399 0.08624118971033568 PALHKIVP 8 Unmodified _PALHKIVP_ 0 0 0 REV__ENST00000495447.5_1_1:165600487-165619011:+|nuORF REV__ENST00000495447.5_1_1:165600487-165619011:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.7783508300781 2 437.779088 873.543623 NaN NaN NaN NaN NaN NaN NaN 82.445 1 86.02 85.52 86.52 3.5753 0 0 0 0.40738 1 19689 19689 0.79363 0 1 + 29656 22653 18781 18792 34400 34400 0.10179286864979531 PALHKQSQSN 10 Unmodified _PALHKQSQSN_ 0 0 0 REV__nc|ENSG00000137337|Q14676-3|MDC1 REV__nc|ENSG00000137337|Q14676-3|MDC1 MSMS UPN47_class_I_Rep_1 2 555.7644653320312 2 555.288537 1108.56252 NaN NaN NaN NaN NaN NaN NaN 62.787 1 66.147 65.647 66.647 3.3595 0 0 0 0.53105 1 14817 14817 1.3295 0.63916 1 + 29657 19227 18782 18793 34401 34401 0.01258171698100341 PALKELLKEAL 11 Unmodified _PALKELLKEAL_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|49|2|sense;L1PA2_dup4081|chr13:40828820-40834834:+|1.249905904261159|0.2328733319459985|2.42|151.0|18|1|sense;L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|73|2|sense;L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|163|3|sense;L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|16|1|sense;L1PA3_dup734|chr1:245816540-245822560:+|1.0854362849122274|0.0909620461680101|3.58|151.0|8|1|sense;L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|84|2|sense;L1PA3_dup6002|chr9:92082240-92088398:-|2.282740852700725|0.2181620912494731|3.39|151.0|14|1|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|17|1|sense;L1PA4_dup11104|chr18:9165716-9171231:-|4.472169502843409|0.1044123093466589|5.42|151.0|111|3|sense;L1PA4_dup11793|chr22:23662984-23669138:+|5.3803792066900895|0.2512553308165009|4.42|151.0|129|3|sense;L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|146|3|sense;L1PA4_dup6151|chr8:99738838-99744983:+|2.459492263223571|0.1152840716297733|4.42|151.0|155|3|sense;L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|81|2|sense;L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|14|1|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|17|1|sense;L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|75|2|sense;L1P1_dup1547|chr8:47500001-47505742:-|2.946594612289576|0.2010030797249618|3.87|151.0|14|1|sense;L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|13|1|sense;L1PA5_dup8571|chr12:4341375-4346760:+|2.412041877871084|0.2878433768439809|3.07|151.0|110|3|sense;L1PA3_dup10156|chr18:49215769-49223192:+|1.7542418894768046|0.1447850574881619|3.6|151.0|197|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|142|3|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|64|2|sense;L1PA2_dup548|chr2:143006043-143012076:+|2.5570917662161987|0.0856997596676011|4.9|151.0|86|2|sense;L1PA2_dup3858|chr12:11297657-11303685:+|1.3991242902592256|0.229719972778847|2.61|151.0|139|3|sense;L1HS_dup1059|chrX:101471545-101475011:+|1.664545474199124|0.4193523476151798|1.99|151.0|95|3|sense;L1PA3_dup512|chr1:169275509-169279839:-|1.048869413170849|0.1198277288768944|3.13|151.0|10|1|sense;L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|13|1|sense;L1PA2_dup4028|chr12:92916602-92921762:+|1.0376094785003296|0.0289335428745472|5.16|150.0|137|3|sense;L1P1_dup1230|chr6:72800171-72802399:-|1.4603821554576806|0.02227705292378|6.03|148.0|2|1|sense;L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|14|1|sense;L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|51|2|sense;L1PA5_dup2471|chr4:53213661-53219784:-|2.730466906966916|0.1639222850485648|4.06|151.0|74|2|sense;L1PA3_dup5121|chr8:98694366-98700518:-|1.9420811833955165|0.1631325511588951|3.57|151.0|139|3|sense;L1PA2_dup200|chr1:169251562-169257591:-|1.8958925897494048|0.0595535827587582|4.99|151.0|36|2|sense;L1PA3_dup7864|chr11:14844352-14850498:+|3.566494696966521|0.2904596827084137|3.62|151.0|82|2|sense;L1PA2_dup221|chr1:176002355-176008367:-|3.1869902394537344|0.0843944549291659|5.24|151.0|70|2|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|57|2|sense;L1PA5_dup5242|chr7:114990351-114995897:-|5.052159401470676|0.1464154544109933|5.11|151.0|76|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|16|1|sense;L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|15|1|sense;L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|11|1|sense;L1PA2_dup2431|chr8:26395613-26401579:+|3.5368864013450736|0.4269177151087489|3.05|151.0|130|3|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|10|1|sense;L1PA4_dup912|chr2:23736569-23742711:+|3.417049270364165|0.1210419867160708|4.82|151.0|15|1|sense;L1PA2_dup219|chr1:174843227-174849243:-|3.385422371269314|0.4502185352130829|2.91|151.0|67|2|sense;L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|127|3|sense;L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|46|2|sense;L1PA3_dup3723|chr5:119294045-119300263:-|5.738578586122925|0.0558010729143642|6.68|151.0|81|2|sense;L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|155|3|sense;L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|85|2|sense;L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|144|3|sense;L1PA3_dup5514|chr8:98584098-98590122:-|1.9161549903336428|0.3419659941644997|2.49|151.0|18|1|sense;L1PA3_dup7637|chr10:74216881-74223021:+|4.513908480505558|0.0955777143311824|5.56|151.0|70|2|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|142|3|sense;L1PA3_dup10344|chr19:32587513-32593595:-|2.0287370604614363|0.2259564938945099|3.17|151.0|63|2|sense;L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|90|2|sense;L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense;L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|16|1|sense;L1PA3_dup1071|chr2:95869530-95875690:+|1.002403934855319|0.1831451396294182|2.45|151.0|13|1|sense;L1PA3_dup3968|chr6:6294744-6300768:-|1.427538487289879|0.4305667852692419|1.73|149.0|160|3|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|76|3|sense;L1PA3_dup4060|chr6:45176062-45181869:+|1.0669433745954506|0.0405563592992917|4.72|150.0|11|1|sense;L1PA3_dup7641|chr10:75558531-75564686:-|5.333025329153107|0.080861835760692|6.04|151.0|89|2|sense;L1PA5_dup10157|chr16:31278738-31284853:-|1.1068638513188322|0.037794633892038|4.87|150.0|15|1|sense;L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|86|2|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|11|1|sense;L1PA3_dup1937|chr3:97904738-97910773:-|1.9306026000164596|0.4417639031982622|2.13|151.0|161|3|sense;L1PA3_dup258|chr1:94506994-94512223:-|1.3044041384065448|0.4624865510661713|1.5|150.0|1|1|sense;L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|86|2|sense;L1PA3_dup7470|chr10:31469211-31475223:+|2.8106536720210755|0.1884756112212745|3.9|151.0|51|2|sense;L1PA2_dup4714|chr18:57719249-57725264:+|6.1797253076448495|0.3632377367277949|4.09|151.0|158|3|sense;L1HS_dup1374|chr14:30684810-30690837:-|1.2268582469020992|0.1603142714844668|2.94|151.0|7|1|sense;L1PA3_dup1269|chr2:157397600-157403696:-|15.433417171013303|0.3140448584091643|5.62|151.0|146|3|sense;L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|147|3|sense;L1P1_dup1882|chrX:57148050-57152918:-|1.9404355929622887|0.046891269545799|5.37|151.0|111|3|sense;L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|59|2|sense;L1PA3_dup1541|chr2:240544495-240550522:+|4.767911594156396|0.2319558514444691|4.36|151.0|128|3|sense;L1PA2_dup4053|chr13:50982055-50988070:+|3.9680787798677137|0.1387446521427328|4.84|151.0|88|2|sense;L1PA2_dup551|chr2:143661563-143667611:+|6.154483636234586|0.1044371447650175|5.88|151.0|70|2|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA2_dup3449|chr10:30948037-30953410:+|1.1083981677439356|0.0934299521211378|3.57|151.0|46|2|sense;L1PA4_dup1349|chr2:135231811-135237948:+|1.9047801410028535|0.1713705438759407|3.47|151.0|136|3|sense;L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|73|2|sense;L1PA2_dup4620|chr17:61110230-61116238:+|3.9396358515013454|0.1650750810842491|4.58|151.0|158|3|sense;L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|73|2|sense;L1PA2_dup3615|chr11:14715909-14721938:+|4.359156102251853|0.0871561334255217|5.64|151.0|63|2|sense;L1PA2_dup2581|chr8:98614446-98620471:+|1.3316650932505545|0.0997431892731582|3.74|151.0|156|3|sense;L1PA2_dup215|chr1:174377792-174383815:-|1.893230001147713|0.1765379000415642|3.42|151.0|156|3|sense;L1HS_dup553|chr5:34147846-34154031:+|1.0296686266490696|0.0435786701224414|4.56|151.0|6|1|sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|145|3|sense;L1HS_dup191|chr2:148188746-148194773:+|2.1724550004371306|0.0498513486414125|5.45|151.0|8|1|sense;L1HS_dup1462|chr16:54042097-54048145:+|2.416431049784204|0.4451227716780219|2.44|151.0|6|1|sense;L1HS_dup1444|chr16:18821267-18827058:-|1.0693674233678694|0.2327118987400905|2.2|143.0|65|2|sense;L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|111|2|sense;L1HS_dup788|chr7:70197329-70203357:+|1.86074791699239|0.0201084658024881|6.53|151.0|155|3|sense;L1HS_dup337|chr3:136479057-136485103:-|3.798017878111875|0.0957321270475341|5.31|151.0|73|2|sense;L1PA3_dup2801|chr4:102697356-102702634:-|7.846325797400948|0.327652332305008|4.58|151.0|67|2|sense;L1PA2_dup2164|chr7:32682679-32688715:-|1.256117456056184|0.3788891291014142|1.73|148.0|82|2|sense;L1PA3_dup398|chr1:121401448-121407469:+|1.5403744149067495|0.2053749047862868|2.91|151.0|8|1|sense;L1PA3_dup3800|chr5:137968596-137974622:+|11.612029046039156|0.2643911469566788|5.46|151.0|74|2|sense;L1PA4_dup4492|chr6:44900044-44906175:+|1.5536649467164132|0.0456383338746951|5.09|151.0|141|3|sense;L1PA4_dup9925|chr13:51649753-51654549:-|2.4831051882964315|0.0210653208503073|6.88|151.0|65|2|sense;L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|74|2|sense;L1PA3_dup3286|chr5:37674241-37679991:-|1.4618322240763002|0.0788680304409529|4.21|151.0|6|1|sense;L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|48|2|sense;L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|85|2|sense;L1PA3_dup7482|chr10:35473783-35479771:+|1.887197265545522|0.0813847102593323|4.54|151.0|63|2|sense;L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|15|1|sense;L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|154|3|sense;L1PA3_dup5937|chr9:68275327-68281363:-|2.150738918218152|0.3667779995092458|2.55|151.0|157|3|sense;L1PA3_dup5886|chr9:41149959-41155994:+|2.3122735538531134|0.3903497094203575|2.57|151.0|147|3|sense;L1PA3_dup4709|chr7:37163343-37169491:-|11.219360921703444|0.1922281966360752|5.87|151.0|11|1|sense;L1PA2_dup4440|chr15:85433964-85439965:+|1.0286431950190111|0.1581883264422988|2.7|151.0|62|2|sense;L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|17|1|sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|82|2|sense;L1PA3_dup7550|chr10:52730356-52736527:-|4.599029805024438|0.0284663052624559|7.34|150.0|12|1|sense;L1PA2_dup977|chr3:151241773-151247772:+|1.7932022209374487|0.0759237769582012|4.56|151.0|80|2|sense;L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|14|1|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|10|1|sense;L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|126|3|sense;L1PA4_dup4557|chr6:57451782-57457923:-|1.5968329131001384|0.0363941645007639|5.46|149.0|10|1|sense;L1PA4_dup11196|chr18:49102419-49108550:-|3.812021986168285|0.3095213112564209|3.62|151.0|80|2|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|145|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|131|3|sense;L1PA4_dup10812|chr16:31337870-31344038:+|1.078653939658795|0.0604456541734595|4.16|151.0|10|1|sense;L1PA4_dup135|chr1:51386448-51391454:+|7.624528336185606|0.1202371152571063|5.99|151.0|52|2|sense;L1PA3_dup10308|chr19:24147529-24153703:-|2.2316196913309025|0.3230875451953656|2.79|149.0|152|3|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|143|3|sense;L1PA4_dup8823|chr11:35754505-35760643:-|1.730681588631465|0.1161966468524292|3.9|150.0|12|1|sense;L1PA3_dup825|chr2:15439501-15445667:+|1.3258350730775432|0.0866026024755428|3.94|151.0|81|2|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|64|2|sense;L1PA3_dup6760|chrX:97509511-97515511:-|1.5910565974324509|0.0794534900487284|4.32|151.0|147|3|sense;L1PA4_dup9324|chr12:11314840-11320374:+|1.2594246853580433|0.0612391185237689|4.36|151.0|127|3|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|13|1|sense;L1PA3_dup3804|chr5:140515515-140520942:+|9.638702187616172|0.2863007707611876|5.07|151.0|143|3|sense;L1PA5_dup5569|chr8:47484872-47491006:+|7.051132682475525|0.4576631104936053|3.95|151.0|79|2|sense;L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|19|1|sense;L1PA3_dup7472|chr10:32558678-32564814:+|1.0084737206068737|0.1655495086793867|2.61|151.0|56|2|sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|161|3|sense;L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|135|3|sense;L1PA3_dup6642|chrX:81339893-81345906:-|1.448269466893641|0.0548265789696478|4.72|151.0|9|1|sense;L1PA3_dup7642|chr10:76219057-76223274:+|1.9037973974433096|0.0347962040179519|5.77|151.0|1|1|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|83|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|48|3|sense;L1PA3_dup3790|chr5:131308076-131312967:-|6.4832116901378845|0.0603830961758547|6.75|151.0|126|3|sense;L1PA5_dup4954|chr7:37120164-37126300:+|3.0874604730534543|0.0560020460736359|5.78|151.0|60|2|sense;L1PA2_dup16|chr1:25506586-25512707:+|1.3364039214258825|0.0952321746847839|3.81|151.0|18|1|sense;L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|23|1|sense;L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|146|3|sense;L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|17|1|sense;L1PA4_dup4494|chr6:45281108-45287253:+|1.4954711006093628|0.0477896836891083|4.97|151.0|20|1|sense;L1PA4_dup733|chr1:213213892-213220019:+|3.796483139130908|0.1322423303040193|4.84|151.0|12|1|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|17|1|sense;L1PA4_dup10609|chr15:51590947-51597084:+|1.8734132440726263|0.0668992513471707|4.81|151.0|131|3|sense;L1PA4_dup5878|chr8:47416625-47422756:-|1.768390925550548|0.0316828952312387|5.8|151.0|74|2|sense;L1P1_dup1044|chr5:82013908-82016680:-|1.2514016480584285|0.0937558532180298|3.74|151.0|18|1|sense;L1PA4_dup6142|chr8:99081431-99087603:-|1.789422199875334|0.058777059339563|4.93|151.0|23|1|sense;L1PA3_dup2050|chr3:121452691-121458395:+|1.1305944953027305|0.0686075763777257|4.04|151.0|123|3|sense;L1PA5_dup4307|chr6:49473415-49477579:+|1.3321493655660486|0.2407611955267065|2.47|151.0|1|1|sense;L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|97|3|sense;L1HS_dup1476|chr17:589719-592965:-|1.1791723017437803|0.0795059933400993|3.89|151.0|3|1|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|2|1|sense;L1PA4_dup6353|chr9:5031772-5037865:+|3.458301767209713|0.140241684053417|4.62|151.0|15|1|sense;L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|128|3|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|18|1|sense;L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|77|2|sense;L1P2_dup1526|chr20:25260506-25265239:+|1.6468664392033836|0.308141366723516|2.42|151.0|19|1|sense;L1PA5_dup652|chr1:212390466-212396588:+|2.1391356834155246|0.0442835685849311|5.59|151.0|88|2|sense;L1PA2_dup1256|chr4:98320499-98325931:+|2.046579117422988|0.1337881091222693|3.94|151.0|79|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|94|3|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|164|3|sense;L1PA4_dup10810|chr16:31307020-31310933:-|1.3311853112010732|0.0564117061676157|4.56|151.0|47|2|sense;L1PA3_dup1687|chr3:33671455-33677714:+|2.6229792291023344|0.3076045160087201|3.09|151.0|62|2|sense;L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|89|3|sense;L1PA4_dup9403|chr12:29323062-29328907:+|6.270396683513843|0.4933265868320131|3.67|151.0|83|2|sense;L1PA2_dup3734|chr11:74758804-74762555:-|1.654956100388474|0.0721109541900339|4.52|151.0|11|1|sense;L1PA3_dup3846|chr5:150742838-150748950:+|6.15701709038747|0.3295787964843827|4.22|151.0|129|3|sense;L1PA5_dup8338|chr11:76927460-76931953:-|1.0465980545712232|0.0392270522504873|4.74|151.0|1|1|sense;L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|17|1|sense;L1PA4_dup3800|chr5:53660006-53665971:-|3.7822936163565264|0.3061610850720977|3.63|151.0|76|2|sense;L1PA3_dup7853|chr11:10173148-10179353:+|1.6721599694215965|0.1198265052135718|3.8|151.0|10|1|sense;L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|61|2|sense;L1PA3_dup9441|chr14:81114166-81120190:+|1.2016156260747857|0.4862989605285416|1.31|151.0|64|2|sense;L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|131|3|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|146|3|sense;L1PA3_dup2651|chr4:74245482-74250213:-|3.012017185249723|0.179774292875577|4.07|151.0|74|3|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|179|3|sense;L1PA3_dup5052|chr7:140760641-140762606:+|2.1041963640438293|0.0503422171838675|5.39|151.0|6|1|sense;L1PA2_dup4413|chr15:64326661-64332685:+|1.68497011038086|0.1104953587875596|3.93|150.0|145|3|sense;L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|18|1|sense;L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|125|3|sense;L1PA4_dup915|chr2:24800324-24806471:-|2.3551848602869825|0.1442131700580088|4.03|151.0|73|2|sense;L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|159|3|sense;L1PA3_dup8522|chr12:45370847-45376865:+|1.1796277739003815|0.150514701208573|2.97|151.0|51|2|sense;L1PA5_dup693|chr1:231907167-231912735:-|4.213830471913982|0.0400776360720188|6.72|151.0|72|2|sense;L1PA4_dup3514|chr5:131331967-131338103:-|9.472325856056734|0.1171505207455728|6.34|151.0|21|1|sense;L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|83|2|sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|40|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|2|1|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|29|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|149|3|sense;L1PA3_dup6536|chrX:72440594-72446687:+|3.657870856154072|0.0644905602100551|5.83|150.0|12|1|sense;L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|62|2|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|9|1|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|52|2|sense;L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|17|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|142|3|sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|16|1|sense;L1PA3_dup9578|chr15:44359621-44364207:+|6.461873592304851|0.2581917439977259|4.65|151.0|92|3|sense;L1PA3_dup1202|chr2:135413766-135418121:+|1.101996599688288|0.0305777075486076|5.17|150.0|33|2|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|100|3|sense;L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|70|3|sense;L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|78|2|sense;L1P1_dup503|chr3:23265721-23266649:-|1.3108329883657852|0.0158280008199244|6.37|151.0|4|1|sense;L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|8|1|sense;L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense;L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|137|3|sense;L1PA6_dup3347|chr9:41258115-41264136:-|2.492461497170712|0.2942167730389589|3.08|150.0|142|3|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|8|1|sense;L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense;L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|137|3|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 408.9222412109375 3 408.923585 1223.74892 NaN NaN NaN NaN NaN NaN NaN 97.05 1 100.83 100.33 101.33 3.7767 0 0 0 0.38417 1 24054 24054 4.7159 0 1 29658 14320;14194;14296;14611 18783 18794 34402 34402 0.145999758139169 PALKKKKR 8 Unmodified _PALKKKKR_ 0 0 0 ENSG00000163632|ENST00000295896|C3orf49 ENSG00000163632|ENST00000295896|C3orf49 ENSG00000163632|ENST00000295896|C3orf49 MULTI-MSMS UPN48_class_I_Rep_2 6 484.8399963378906 2 484.840011 967.665469 0.24801 0.00012024 0.093229 4.5201E-05 0.34124 0.00016544 484.8399735321339 108.31 0.54762 111.98 111.72 112.27 3.6746 221 61 4 0 0 0 0.82752 1 25636 25636 0.69038 0 1 67325000 29659 4024 18784 18795 34403 34403 0.1803432894736261 PALLCVVIF 9 Unmodified _PALLCVVIF_ 0 0 0 ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 MULTI-MSMS UPN48_class_I_Rep_2 6 487.7908630371094 2 487.790807 973.56706 0.24945 0.00012168 -0.13494 -6.5821E-05 0.11452 5.586E-05 487.79066346433274 75.256 0.14617 78.846 78.792 78.938 3.59 28 15 2 0 0 0 0.48414 1 17745 17745 2.3027 0 1 193360 29660 5339 18785 18796 34404 34404 0.0792196458729677 PALLCVVIF 9 Unmodified _PALLCVVIF_ 0 0 0 ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 487.790807 973.56706 0.26686 0.00013017 -0.15233 -7.4303E-05 0.11453 5.5869E-05 487.7906714784059 78.707 0.14406 78.707 78.667 78.811 0 -0.036184 0.00025916 NaN 2.3027 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 314720 29661 5339 18785 18796 0.0792196458729677 PALLCVVIF 9 Unmodified _PALLCVVIF_ 0 0 0 ENSG00000196944|ENST00000366473|OR2T4;nc|ENSG00000196944|Q8NH00|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 ENSG00000196944|ENST00000366473|OR2T4 MULTI-MATCH UPN47_class_I_Rep_3 4 2 487.790807 973.56706 0.18247 8.9008E-05 -1.136 -0.00055411 -0.95348 -0.0004651 487.7900747354189 75.462 0.60617 78.709 78.503 79.109 3.2464 -0.034173 -0.00070045 NaN 2.3027 102 54 2 NaN NaN NaN NaN 0 NaN NaN 0 212470 29662 5339 18785 18796 0.0792196458729677 PALLWLML 8 Unmodified _PALLWLML_ 0 0 0 L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|199|3|anti-sense;L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|242|1|anti-sense L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|199|3|anti-sense L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|199|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.7857666015625 2 478.785524 955.556496 0.13057 6.2516E-05 -0.2745 -0.00013143 -0.14393 -6.8909E-05 478.78536421499643 83.038 0.57719 86.626 86.319 86.896 3.5871 105 61 2 0 0 0 0.82752 1 19797 19797 2.8892 0 1 252940 29663 14437 18786 18797 34405 34405 0.0769398193286861 PALLWLML 8 Unmodified _PALLWLML_ 0 0 0 L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|199|3|anti-sense;L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|242|1|anti-sense L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|199|3|anti-sense L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|199|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.785400390625 2 478.785524 955.556496 0.24853 0.00011899 -0.26165 -0.00012528 -0.013125 -6.2843E-06 478.78533088623215 82.948 0.59021 86.654 86.393 86.983 3.7066 139 78 2 0 0 0 0.82752 1 19697 19697 2.8892 0 1 240740 29664 14437 18786 18797 34406 34406 0.0769398193286861 PALNKTPKIK 10 Unmodified _PALNKTPKIK_ 0 0 0 HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|67|3|sense HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|67|3|sense HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|67|3|sense MSMS UPN46_class_I_Rep_3 1 555.3535766601562 2 555.355691 1108.69683 NaN NaN NaN NaN NaN NaN NaN 95.411 1 95.411 94.911 95.911 0 0 0 0 0.53105 1 23164 23164 1.3295 0 1 29665 8155 18787 18798 34407 34407 0.14682857190769028 PALPHPPPL 9 Unmodified _PALPHPPPL_ 0 0 0 REV__nc|ENSG00000187243|Q96JG8-3|MAGED4 REV__nc|ENSG00000187243|Q96JG8-3|MAGED4 MSMS UPN47_class_I_Rep_1 2 469.7788391113281 2 469.776545 937.538538 NaN NaN NaN NaN NaN NaN NaN 84.144 1 87.709 87.209 88.209 3.5655 0 0 0 0.39326 1 21051 21051 2.3027 0 1 + 29666 22502 18788 18799 34408 34408 0.06726983002374709 PALPKTVS 8 Unmodified _PALPKTVS_ 0 0 0 ENSG00000166682|ENST00000299882|TMPRSS5 ENSG00000166682|ENST00000299882|TMPRSS5 ENSG00000166682|ENST00000299882|TMPRSS5 MSMS UPN47_class_I_Rep_2 3 406.7760009765625 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 70.421 1 73.704 73.204 74.204 3.2828 0 0 0 0.40746 1 17157 17157 0.69038 0 1 29667 4256 18789 18800 34409 34409 0.06707301357096185 PALPRANQRK 10 Unmodified _PALPRANQRK_ 0 0 0 L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|44|2|anti-sense L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|44|2|anti-sense L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_2 3 575.8433227539062 2 575.843813 1149.67307 NaN NaN NaN NaN NaN NaN NaN 83.429 1 86.841 86.341 87.341 3.4116 0 0 0 0.53105 1 20796 20796 1.4819 0 1 29668 12739 18790 18801 34410 34410 0.10422436476960684 PALQARTR 8 Unmodified _PALQARTR_ 0 0 0 ENST00000592689.5_1_2:179402342-179404892:+|nuORF ENST00000592689.5_1_2:179402342-179404892:+|nuORF ENST00000592689.5_1_2:179402342-179404892:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 456.7723083496094 2 456.772326 911.530098 -0.019571 -8.9396E-06 -0.084589 -3.8638E-05 -0.10416 -4.7577E-05 456.77219615677177 81.007 0.73104 84.391 84.128 84.859 3.3839 155 90 2 0 0 0 0.82752 1 20208 20208 4.3292 0 1 315450 29669 7636 18791 18802 34411 34411 0.07079429085740685 PALQRMFKVL 10 Unmodified _PALQRMFKVL_ 0 0 0 L1MCa_dup4001|chr9:92689844-92691051:-|1.3765418128642712|0.011571136648628|6.89|151.0|14|1|sense L1MCa_dup4001|chr9:92689844-92691051:-|1.3765418128642712|0.011571136648628|6.89|151.0|14|1|sense L1MCa_dup4001|chr9:92689844-92691051:-|1.3765418128642712|0.011571136648628|6.89|151.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 601.8575439453125 2 601.857544 1201.70053 NaN NaN NaN NaN NaN NaN NaN 95.033 1 98.814 98.314 99.314 3.7804 0 0 0 0.53105 1 22592 22592 1.4819 0 1 29670 11801 18792 18803 34412 34412 0.10775203693015101 PALRAARSA 9 Unmodified _PALRAARSA_ 0 0 0 REV__ENST00000359611.3_1_6:27860842-27860923:-|nuORF REV__ENST00000359611.3_1_6:27860842-27860923:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 456.7720031738281 2 456.772326 911.530098 0.19892 9.086E-05 -0.30622 -0.00013987 -0.1073 -4.9013E-05 456.77212811937767 84.216 0.27915 84.216 84.035 84.314 0 49 28 2 0 0 0 0.47763 1 19989 19989 2.9952 0 1 1363200 + 29671 21891 18793 18804 34413 34413 0.07079429085740685 PALRIWQKF 9 Unmodified _PALRIWQKF_ 0 0 0 L1MC_dup6736|chr15:45600342-45600849:-|1.7493365833949008|0.4624319631117632|1.92|151.0|31|2|anti-sense L1MC_dup6736|chr15:45600342-45600849:-|1.7493365833949008|0.4624319631117632|1.92|151.0|31|2|anti-sense L1MC_dup6736|chr15:45600342-45600849:-|1.7493365833949008|0.4624319631117632|1.92|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 579.8441772460938 2 579.842751 1157.67095 NaN NaN NaN NaN NaN NaN NaN 93.478 1 97.37 96.87 97.87 3.8914 0 0 0 0.39428 1 22154 22154 2.0598 0 1 29672 11070 18794 18805 34414 34414 0.09842007739166547 PALSEDRCWW 10 Unmodified _PALSEDRCWW_ 0 0 0 REV__ENST00000251879.10_1_9:5763237-5763288:+|nuORF REV__ENST00000251879.10_1_9:5763237-5763288:+|nuORF MSMS UPN48_class_I_Rep_3 7 631.78759765625 2 631.784773 1261.55499 NaN NaN NaN NaN NaN NaN NaN 40.436 1 44.087 43.587 44.587 3.6509 0 0 0 0.53105 1 7190 7190 1.4819 0.8804 1 + 29673 21522 18795 18806 34415 34415 -0.06532303893823155 PALSFTVYWL 10 Unmodified _PALSFTVYWL_ 0 0 0 MLT2F_dup1089|chr9:34334792-34335465:+|1.019908075277212|0.2651319611946702|1.94|151.0|31|1|anti-sense MLT2F_dup1089|chr9:34334792-34335465:+|1.019908075277212|0.2651319611946702|1.94|151.0|31|1|anti-sense MLT2F_dup1089|chr9:34334792-34335465:+|1.019908075277212|0.2651319611946702|1.94|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 598.8209228515625 2 598.82115 1195.62775 NaN NaN NaN NaN NaN NaN NaN 65.729 1 68.909 68.409 69.409 3.1795 0 0 0 0.53105 1 15805 15805 1.6526 0 1 29674 16520 18796 18807 34416 34416 0.03775773171241781 PALSQLGQRIR 11 Unmodified _PALSQLGQRIR_ 0 0 0 REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|48|3|sense REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|48|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.8698120117188 2 619.870028 1237.7255 0.65608 0.00040669 -0.88175 -0.00054657 -0.22567 -0.00013988 620.371259269524 88.381 0.093933 88.381 88.327 88.421 0 14 9 2 0 0 0 0.65559 1 21229 21229 2.7352 1.2533 1 145230 + 29675 23515 18797 18808 34417 34417 0.11614974819940471 PALSQLGQRIR 11 Unmodified _PALSQLGQRIR_ 0 0 0 REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|48|3|sense REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|48|3|sense MSMS UPN47_class_I_Rep_1 2 619.8697509765625 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 85.284 1 88.875 88.375 89.375 3.5914 0 0 0 0.38417 1 21298 21298 1.0715 0.5467 1 + 29676 23515 18797 18808 34418 34418 0.11614974819940471 PALYSYFCAAL 11 Unmodified _PALYSYFCAAL_ 0 0 0 REV__LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|57|2|anti-sense REV__LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|57|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 406.23138427734375 3 406.86697 1217.57908 -0.0018319 -7.4534E-07 3.7358 0.00152 3.7339 0.0015192 407.2030828005556 32.909 0.045712 36.598 36.581 36.627 3.6896 6 4 2 0 0 0 22.551 1 5052 5052 1.4551 0 1 36078 + 29677 30813 18798 18809 34419 34419 -0.021004634601467842 PALYSYFCAAL 11 Unmodified _PALYSYFCAAL_ 0 0 0 REV__LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|57|2|anti-sense REV__LTR12C_dup232|chr2:69621901-69623328:+|1.3910243128067736|0.0221382819127787|5.97|151.0|57|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 406.86697 1217.57908 -0.052941 -2.154E-05 9.9578 0.0040515 9.9049 0.00403 407.20480136137417 36.506 0.047386 36.506 36.467 36.514 0 -0.046016 0.0048429 NaN 1.4551 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 19847 + 29678 30813 18798 18809 -0.021004634601467842 PAMFHHLL 8 Unmodified _PAMFHHLL_ 0 0 0 REV__ENSG00000198753|ENST00000361971|PLXNB3 REV__ENSG00000198753|ENST00000361971|PLXNB3 MSMS UPN48_class_I_Rep_2 6 483.25604248046875 2 483.254923 964.495293 NaN NaN NaN NaN NaN NaN NaN 35.704 1 39.391 38.891 39.891 3.6877 0 0 0 0.40738 1 5920 5920 0.79363 0 1 + 29679 21145 18799 18810 34420 34420 0.011624699534536376 PAMPSASLFK 10 Unmodified _PAMPSASLFK_ 0 0 0 REV__ENSG00000198944|ENST00000378693|SOWAHA REV__ENSG00000198944|ENST00000378693|SOWAHA MSMS UPN47_class_I_Rep_1 2 524.7777709960938 2 524.778428 1047.5423 NaN NaN NaN NaN NaN NaN NaN 26.359 1 30.122 29.622 30.622 3.7624 0 0 0 0.53105 1 3760 3760 2.9952 0.41776 1 + 29680 21166 18800 18811 34421 34421 0.020432847139318255 PANRRKRNI 9 Unmodified _PANRRKRNI_ 0 0 0 REV__L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|82|2|sense REV__L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|82|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 562.843994140625 2 562.841605 1123.66866 0.43052 0.00024231 2.5305 0.0014243 2.961 0.0016666 562.8431899773414 110.58 0.089737 114.24 114.22 114.31 3.6654 12 8 3 0 0 0 0.12462 1 26253 26253 1.8442 0.36234 1 351920 + 29681 29680 18801 18812 34422 34422 0.11176972054067846 PANRRKRNI 9 Unmodified _PANRRKRNI_ 0 0 0 REV__L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|82|2|sense REV__L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|82|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 562.841605 1123.66866 0.43877 0.00024696 2.2944 0.0012914 2.7332 0.0015383 562.8430257618381 110.51 0.074562 114.14 114.1 114.18 3.6326 -0.051425 -0.0001451 NaN 1.8442 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 435460 + 29682 29680 18801 18812 0.11176972054067846 PAPAPLPFLG 10 Unmodified _PAPAPLPFLG_ 0 0 0 REV__MER52A_dup250|chr3:111616693-111618327:+|1.402614188007873|0.0310546305837674|5.5|150.0|21|3|sense REV__MER52A_dup250|chr3:111616693-111618327:+|1.402614188007873|0.0310546305837674|5.5|150.0|21|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.2854919433594 2 490.284203 978.553853 0.36142 0.0001772 0.60928 0.00029872 0.97069 0.00047591 490.28552567495234 54.671 0.48775 57.99 57.787 58.275 3.3187 48 22 3 0 0 0 0.56281 1 12418 12418 1.8442 0 1 181160 + 29683 31418 18802 18813 34423 34423 0.06371849799563734 PAPCLWFF 8 Unmodified _PAPCLWFF_ 0 0 0 REV__L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|291|2|anti-sense REV__L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|291|2|anti-sense MSMS UPN47_class_I_Rep_3 4 490.73785400390625 2 490.738574 979.462595 NaN NaN NaN NaN NaN NaN NaN 111.36 1 114.88 114.38 115.38 3.5207 0 0 0 0.40738 1 27335 27335 0.79363 0 1 + 29684 29651 18803 18814 34424 34424 -0.027957371694128597 PAPIKSNVSRR 11 Unmodified _PAPIKSNVSRR_ 0 0 0 REV__KIF2C|p.Q367Rfs*18|1|0.08|ENSG00000142945|chr1:44757936-44757936|C/-|frameshift_variant REV__KIF2C|p.Q367Rfs*18|1|0.08|ENSG00000142945|chr1:44757936-44757936|C/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 612.8626098632812 2 612.862203 1223.70985 NaN NaN NaN NaN NaN NaN NaN 52.13 1 52.13 51.63 52.63 0 0 0 0 0.38417 1 11128 11128 0.96228 0 1 + 29685 19421 18804 18815 34425 34425 0.10694688302896793 PAPLCTSGRIW 11 Unmodified _PAPLCTSGRIW_ 0 0 0 L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|276|2|anti-sense;L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|133|1|anti-sense;L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|278|2|anti-sense;L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|347|3|anti-sense;L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|199|2|anti-sense;L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|209|2|anti-sense;L1PA7_dup5680|chr6:143796419-143800252:-|1.1422970443104776|0.1564095185898279|2.87|150.0|181|2|anti-sense;L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|273|2|anti-sense;L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|203|1|anti-sense;L1PA7_dup4132|chr5:38986641-38988608:-|4.324996898329519|0.3258685723464583|3.73|151.0|68|1|anti-sense;L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|204|1|anti-sense;L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|356|3|anti-sense;L1PA7_dup12487|chr18:79078664-79081578:-|2.019233300739974|0.0286433933922825|6.14|151.0|149|2|anti-sense;L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|281|2|anti-sense;L1PA6_dup1319|chr3:172659994-172666110:-|3.698000119457869|0.0745739510709367|5.63|151.0|340|3|anti-sense;L1PA7_dup5557|chr6:118833885-118838156:-|3.572678605156628|0.0589852586195627|5.92|151.0|156|1|anti-sense;L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|196|2|anti-sense;L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|150|1|anti-sense;L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|171|3|anti-sense;L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|202|2|anti-sense;L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|349|3|anti-sense;L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|179|3|anti-sense;L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|329|3|anti-sense;L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|282|2|anti-sense;L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|172|2|anti-sense;L1PA8_dup6025|chr12:107082036-107085835:+|1.0853707154906211|0.027626641533181|5.3|149.0|219|3|anti-sense;L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|332|3|anti-sense;L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|340|3|anti-sense;L1PA6_dup4194|chr10:75515701-75521837:-|10.9505464623769|0.0574793887350666|7.57|151.0|338|3|anti-sense;L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|211|1|anti-sense;L1PA6_dup1254|chr3:142135407-142141502:-|5.131494547787043|0.0894150822744212|5.84|151.0|275|2|anti-sense;L1PA5_dup9473|chr14:56228634-56234747:+|2.248301402833117|0.0719750817947556|4.97|151.0|212|1|anti-sense;L1PA5_dup2007|chr3:88097377-88100968:+|4.194074494926896|0.175076527912325|4.58|151.0|219|3|anti-sense;L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|341|3|anti-sense;L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|339|3|anti-sense;L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|204|1|anti-sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|204|1|anti-sense;L1PA4_dup9324|chr12:11314840-11320374:+|1.2594246853580433|0.0612391185237689|4.36|151.0|192|1|anti-sense;L1PA4_dup6324|chr9:229904-236050:-|8.974160791668695|0.0597994361629901|7.23|151.0|328|3|anti-sense;L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|205|1|anti-sense;L1PA3_dup6603|chrX:78258650-78261886:-|2.5565963010805195|0.2506611837684148|3.35|151.0|126|1|anti-sense;L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|228|2|anti-sense;L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|219|1|anti-sense L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|276|2|anti-sense L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|276|2|anti-sense MSMS UPN47_class_I_Rep_2 3 600.8135375976562 2 600.813333 1199.61211 NaN NaN NaN NaN NaN NaN NaN 75.069 1 78.382 77.882 78.882 3.3127 0 0 0 0.38417 1 18519 18519 1.1933 0 1 29686 13507 18805 18816 34426 34426 0.020291633825536337 PAPLGGYH 8 Unmodified _PAPLGGYH_ 0 0 0 ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7 ENST00000459625.5_1_12:48179068-48183703:-|nuORF ENST00000459625.5_1_12:48179068-48183703:-|nuORF MSMS UPN47_class_I_Rep_3 4 406.2071533203125 2 406.208495 810.402438 NaN NaN NaN NaN NaN NaN NaN 77.6 1 80.869 80.369 81.369 3.269 0 0 0 0.40738 1 19332 19332 0.79363 0 1 29687 970 18806 18817 34427 34427 -0.010347115082936398 PAPRRASRPI 10 Unmodified _PAPRRASRPI_ 0 0 0 SVA_D_dup854|chr10:92974545-92976676:+|1.3270563961929644|0.4274885378959713|1.63|151.0|24|2|sense SVA_D_dup854|chr10:92974545-92976676:+|1.3270563961929644|0.4274885378959713|1.63|151.0|24|2|sense SVA_D_dup854|chr10:92974545-92976676:+|1.3270563961929644|0.4274885378959713|1.63|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 560.8385009765625 2 560.838531 1119.66251 NaN NaN NaN NaN NaN NaN NaN 100.63 1 100.63 100.13 101.13 0 0 0 0 0.53105 1 24533 24533 2.9952 0 1 29688 32855 18807 18818 34428 34428 0.10746453822548574 PAPTFYVSD 9 Unmodified _PAPTFYVSD_ 0 0 0 ENSG00000197724|ENST00000359246|PHF2 ENSG00000197724|ENST00000359246|PHF2 ENSG00000197724|ENST00000359246|PHF2 MSMS UPN47_class_I_Rep_2 3 498.71685791015625 2 498.737283 995.460012 NaN NaN NaN NaN NaN NaN NaN 35.814 1 39.226 38.726 39.726 3.4114 0 0 0 0.39518 1 6647 6647 1.8442 0 1 29689 5387 18808 18819 34429 34429 -0.03789914093374591 PAQCFLLILS 10 Unmodified _PAQCFLLILS_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|139|1|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|139|1|anti-sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|139|1|anti-sense MSMS UPN47_class_I_Rep_3 4 552.8084716796875 2 552.809728 1103.6049 NaN NaN NaN NaN NaN NaN NaN 34.007 1 37.282 36.782 37.782 3.2748 0 0 0 0.53105 1 6133 6133 1.6526 0 1 29690 12975 18809 18820 34430 34430 0.05724430782129275 PAQCGETCLA 10 Unmodified _PAQCGETCLA_ 0 0 0 REV__ENST00000520864.5_1_5:170395310-170632776:+|nuORF REV__ENST00000520864.5_1_5:170395310-170632776:+|nuORF MSMS UPN47_class_I_Rep_1 2 496.7121276855469 2 496.712427 991.410302 NaN NaN NaN NaN NaN NaN NaN 54.586 1 58.088 57.588 58.588 3.5014 0 0 0 0.53105 1 12324 12324 0 0 1 + 29691 22785 18810 18821 34431 34431 -0.08574688365365546 PAQRKAQA 8 Unmodified _PAQRKAQA_ 0 0 0 L1M4c_dup1254|chr6:158576030-158576780:+|1.2236730495223025|0.0350003968843392|5.13|151.0|24|3|sense L1M4c_dup1254|chr6:158576030-158576780:+|1.2236730495223025|0.0350003968843392|5.13|151.0|24|3|sense L1M4c_dup1254|chr6:158576030-158576780:+|1.2236730495223025|0.0350003968843392|5.13|151.0|24|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 435.25128173828125 2 435.251226 868.487899 0.14708 6.4018E-05 -0.18098 -7.8772E-05 -0.033898 -1.4754E-05 435.2510662705248 86.739 0.54129 86.739 86.494 87.035 0 144 55 3 0 0 0 0.82752 1 20815 20815 4.756 0 1 2310000 29692 9034 18811 18822 34432 34432 0.048394536773685104 PAQVVLANRL 10 Unmodified _PAQVVLANRL_ 0 0 0 REV__L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|95|3|anti-sense REV__L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|95|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.8301391601562 2 540.82984 1079.64513 0.38328 0.00020729 0.25871 0.00013992 0.64198 0.0003472 540.8298995383489 107.86 0.44687 111.49 111.39 111.84 3.6313 102 37 5 0 0 0 0.51565 1 26063 26063 10.074 0.72649 1 90433000 + 29693 29202 18812 18823 34433 34433 0.10849113496897189 PAQWWAWIIK 10 Unmodified _PAQWWAWIIK_ 0 0 0 REV__AluSg_dup29704|chr16:69637939-69638247:+|1.4769495174179343|0.047868733615515|4.95|151.0|6|2|sense REV__AluSg_dup29704|chr16:69637939-69638247:+|1.4769495174179343|0.047868733615515|4.95|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 649.855224609375 2 649.855858 1297.69716 NaN NaN NaN NaN NaN NaN NaN 104.48 1 108.18 107.68 108.68 3.6991 0 0 0 0.53105 1 24727 24727 8.7454 2.5396 1 + 29694 17097 18813 18824 34434 34434 0.06022276910630353 PARAALAHLA 10 Unmodified _PARAALAHLA_ 0 0 0 ENST00000597578.1_1_16:86524040-86542451:-|nuORF ENST00000597578.1_1_16:86524040-86542451:-|nuORF ENST00000597578.1_1_16:86524040-86542451:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.79608154296875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 116.13 1 119.59 119.09 120.09 3.462 0 0 0 0.53105 1 28569 28569 0 0 1 29695 7651 18814 18825 34435 34435 0.08184288636857673 PARAALAHLA 10 Unmodified _PARAALAHLA_ 0 0 0 ENST00000597578.1_1_16:86524040-86542451:-|nuORF ENST00000597578.1_1_16:86524040-86542451:-|nuORF ENST00000597578.1_1_16:86524040-86542451:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.7958679199219 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 116.62 1 120.08 119.58 120.58 3.462 0 0 0 0.53105 1 28703 28703 0 0 1 29696 7651 18814 18825 34436 34436 0.08184288636857673 PARIYIKK 8 Unmodified _PARIYIKK_ 0 0 0 ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF ENSG00000138380|ENST00000438828|CARF ENSG00000138380|ENST00000438828|CARF MSMS UPN47_class_I_Rep_1 2 494.8192138671875 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 15.258 1 18.754 18.254 19.254 3.4968 0 0 0 0.40746 1 771 771 0.69038 0 1 29697 3085 18815 18826 34437 34437 0.12862933819133104 PARLRCRKRL 10 Unmodified _PARLRCRKRL_ 0 0 0 REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF MSMS UPN48_class_I_Rep_3 7 634.728271484375 2 634.895857 1267.77716 NaN NaN NaN NaN NaN NaN NaN 107.44 1 111.12 110.62 111.62 3.6813 0 0 0 0.53105 1 25337 25337 0.45834 0 1 + 29698 22646 18816 18827 34438 34438 0.15398440032845429 PARQDENKVD 10 Unmodified _PARQDENKVD_ 0 0 0 ENST00000432307.1_1_X:110862947-110863739:-|nuORF ENST00000432307.1_1_X:110862947-110863739:-|nuORF ENST00000432307.1_1_X:110862947-110863739:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.2874755859375 2 586.288734 1170.56291 NaN NaN NaN NaN NaN NaN NaN 27.424 1 30.987 30.487 31.487 3.5629 0 0 0 0.53105 1 3529 3529 1.4819 0 1 29699 6735 18817 18828 34439 34439 -0.015544533727279486 PARQWGLL 8 Unmodified _PARQWGLL_ 0 0 0 ENST00000373640.4_1_2:231911758-231911950:+|nuORF ENST00000373640.4_1_2:231911758-231911950:+|nuORF ENST00000373640.4_1_2:231911758-231911950:+|nuORF MSMS UPN48_class_I_Rep_1 5 470.7723388671875 2 470.771794 939.529036 NaN NaN NaN NaN NaN NaN NaN 77.404 1 80.926 80.426 81.426 3.5221 0 0 0 0.40738 1 18419 18419 0.79363 0 1 29700 6419 18818 18829 34440 34440 0.0568521471685699 PARRHNRR 8 Unmodified _PARRHNRR_ 0 0 0 ENST00000430114.1_1_1:202830680-202830746:-|nuORF ENST00000430114.1_1_1:202830680-202830746:-|nuORF ENST00000430114.1_1_1:202830680-202830746:-|nuORF MSMS UPN46_class_I_Rep_3 1 531.8092041015625 2 531.810639 1061.60673 NaN NaN NaN NaN NaN NaN NaN 100.95 1 100.95 100.45 101.45 0 0 0 0 0.40738 1 24622 24622 0.79363 0 1 29701 6718 18819 18830 34441 34441 0.07838665425583713 PASAAGYEALL 11 Unmodified _PASAAGYEALL_ 0 0 0 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 MULTI-MSMS UPN46_class_I_Rep_3 1 531.777099609375 2 531.776939 1061.53933 0.32399 0.00017229 -0.006351 -3.3773E-06 0.31764 0.00016891 531.7770259345385 81.232 0.40453 81.232 80.987 81.391 0 62 42 3 0 0 0 0.2836 2 19129 19129;19169 21.537 5.3879 1 202950 29702 5199 18820 18831 34442;34443 34442 0.011017328607522359 PASAAGYEALL 11 Unmodified _PASAAGYEALL_ 0 0 0 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 MULTI-MSMS UPN47_class_I_Rep_1 2 531.7769165039062 2 531.776939 1061.53933 0.36546 0.00019434 -0.918 -0.00048817 -0.55253 -0.00029383 531.7767996694251 76.132 0.82034 79.535 79.182 80.002 3.4034 181 76 4 0 0 0 0.30309 2 18843 18843;18882 34.402 1.616 1 477530 29703 5199 18820 18831 34444;34445 34444 0.011017328607522359 PASAAGYEALL 11 Unmodified _PASAAGYEALL_ 0 0 0 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 MULTI-MSMS UPN47_class_I_Rep_2 3 531.7772216796875 2 531.776939 1061.53933 0.29959 0.00015931 -0.10637 -5.6566E-05 0.19322 0.00010275 531.7767667246724 76.261 0.73013 79.583 79.311 80.041 3.3216 132 73 3 0 0 0 0.2836 1 18818 18818 21.537 4.4241 1 393620 29704 5199 18820 18831 34446 34446 0.011017328607522359 PASAAGYEALL 11 Unmodified _PASAAGYEALL_ 0 0 0 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 ENSG00000187634|ENST00000616016|SAMD11 MULTI-MSMS UPN47_class_I_Rep_3 4 531.7767333984375 2 531.776939 1061.53933 0.41179 0.00021898 -0.4713 -0.00025063 -0.059513 -3.1648E-05 531.776788971963 76.36 0.7674 79.617 79.283 80.051 3.2573 188 78 4 0 0 0 0.33077 1 18931 18931 27.629 6.0918 1 463140 29705 5199 18820 18831 34447 34447 0.011017328607522359 PASFFDDDDDG 11 Unmodified _PASFFDDDDDG_ 0 0 0 REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MSMS UPN47_class_I_Rep_2 3 601.1756591796875 2 600.720015 1199.42548 NaN NaN NaN NaN NaN NaN NaN 119.43 1 122.91 122.41 123.41 3.4793 0 0 0 0.38417 1 29254 29254 0 0 1 + 29706 18066 18821 18832 34448 34448 -0.16625826762810902 PASPILGIYTK 11 Unmodified _PASPILGIYTK_ 0 0 0 L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.3405151367188 2 580.339707 1158.66486 0.54313 0.0003152 -0.17884 -0.00010379 0.36429 0.00021141 580.3397047399806 71.534 0.083572 75.06 75.024 75.107 3.5266 12 7 2 0 0 0 0.63951 1 16621 16621 4.1895 0 1 84115 29707 14652 18822 18833 34449 34449 0.09187444716985738 PASPILGIYTK 11 Unmodified _PASPILGIYTK_ 0 0 0 L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 580.339707 1158.66486 0.47132 0.00027353 -0.055775 -3.2369E-05 0.41554 0.00024116 580.3394215974685 71.505 0.056351 75.055 75.029 75.085 3.5505 -0.0024669 5.017E-05 NaN 4.1895 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66688 29708 14652 18822 18833 0.09187444716985738 PASPILGIYTK 11 Unmodified _PASPILGIYTK_ 0 0 0 L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|17|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 580.339707 1158.66486 0.54313 0.0003152 -0.17884 -0.00010379 0.36429 0.00021141 580.3397047399806 71.534 0.083572 75.06 75.024 75.107 3.5266 0.0024669 -9.2674E-05 NaN 4.1895 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 84115 29709 14652 18822 18833 0.09187444716985738 PASQPPGTPQL 11 Unmodified _PASQPPGTPQL_ 0 0 0 ENSG00000028277.21,POU2F2,chr19,-,I11.1,42110757,42116708|26|9.79|1|intron;ENSG00000028277.21,POU2F2,chr19,-,I11.1,42110757,42116708|26|9.79|2|intron ENSG00000028277.21,POU2F2,chr19,-,I11.1,42110757,42116708|26|9.79|1|intron ENSG00000028277.21,POU2F2,chr19,-,I11.1,42110757,42116708|26|9.79|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 546.787353515625 2 546.787838 1091.56112 0.45286 0.00024762 -0.26664 -0.0001458 0.18621 0.00010182 546.7877874598333 43.71 0.73442 47.22 46.878 47.612 3.5103 85 62 3 0 0 0 0.57788 1 8320 8320 5.7834 0.48655 1 168770 29710 829 18823 18834 34450 34450 0.019005376093446102 PASYFLLPLF 10 Unmodified _PASYFLLPLF_ 0 0 0 LTR10C_dup219|chr8:51877069-51877652:-|1.4111840854561473|0.0151002652258175|6.55|151.0|19|3|sense LTR10C_dup219|chr8:51877069-51877652:-|1.4111840854561473|0.0151002652258175|6.55|151.0|19|3|sense LTR10C_dup219|chr8:51877069-51877652:-|1.4111840854561473|0.0151002652258175|6.55|151.0|19|3|sense MSMS UPN48_class_I_Rep_2 6 584.2743530273438 2 584.326068 1166.63758 NaN NaN NaN NaN NaN NaN NaN 63.97 1 67.444 66.944 67.944 3.4743 0 0 0 0.53105 1 14423 14423 6.2058 1.8765 1 29711 15509 18824 18835 34451 34451 0.060929611766141534 PATPRPDR 8 Unmodified _PATPRPDR_ 0 0 0 ENSG00000232237|ENST00000449188|ASCL5;nc|ENSG00000232237|Q7RTU5|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 MSMS UPN46_class_I_Rep_3 1 455.24859619140625 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 66.826 1 66.826 66.326 67.326 0 0 0 0 0.40604 1 15182 15182 2.5775 0 1 29712 5681 18825 18836 34452 34452 0.024911498147503153 PATPRPDR 8 Unmodified _PATPRPDR_ 0 0 0 ENSG00000232237|ENST00000449188|ASCL5;nc|ENSG00000232237|Q7RTU5|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 MSMS UPN47_class_I_Rep_1 2 455.2490234375 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 49.206 1 52.865 52.365 53.365 3.6592 0 0 0 0.40604 1 10686 10686 2.5775 0 1 29713 5681 18825 18836 34453 34453 0.024911498147503153 PATWEPEAGEL 11 Unmodified _PATWEPEAGEL_ 0 0 0 AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|11|3|sense;AluSx3_dup29410|chr19:15308734-15309014:+|1.0161608495963643|0.0109226154290721|6.54|151.0|10|3|sense AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|11|3|sense AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 600.283203125 2 600.282586 1198.55062 0.54841 0.0003292 -0.38526 -0.00023126 0.16315 9.7935E-05 600.2824969303704 58.841 0.6427 62.328 61.983 62.626 3.487 85 40 3 0 0 0 0.295 1 12890 12890 16.149 2.2431 1 217340 29714 332 18826 18837 34454 34454 -0.040714898357464335 PATWEPEAGEL 11 Unmodified _PATWEPEAGEL_ 0 0 0 AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|11|3|sense;AluSx3_dup29410|chr19:15308734-15309014:+|1.0161608495963643|0.0109226154290721|6.54|151.0|10|3|sense AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|11|3|sense AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 600.2827758789062 2 600.282586 1198.55062 0.57351 0.00034427 -0.49926 -0.0002997 0.074255 4.4574E-05 600.2824033691994 58.826 0.64922 62.325 62.057 62.706 3.4987 81 39 3 0 0 0 0.48412 1 12873 12873 8.1555 0 1 267980 29715 332 18826 18837 34455 34455 -0.040714898357464335 PAVHASLDKF 10 Unmodified _PAVHASLDKF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN48_class_I_Rep_1 5 542.7924194335938 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 36.407 1 39.914 39.414 40.414 3.507 0 0 0 0.53105 1 6072 6072 2.7352 0.15772 1 + 29716 5235 18827 18838 34456 34456 0.032851453345756454 PAVHASLDKF 10 Unmodified _PAVHASLDKF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN48_class_I_Rep_1 5 542.7918701171875 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 36.534 1 40.041 39.541 40.541 3.507 0 0 0 0.53105 1 6109 6109 5.2969 1.3525 1 + 29717 5235 18827 18838 34457 34457 0.032851453345756454 PAVHASLDKF 10 Unmodified _PAVHASLDKF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 542.792724609375 2 542.792924 1083.57129 0.45487 0.0002469 0.95548 0.00051863 1.4103 0.00076552 543.2956878761905 36.4 0.272 40.088 39.907 40.179 3.6877 45 31 2 0 0 0 0.55148 1 6107 6107 5.2969 2.3016 1 149900 + 29718 5235 18827 18838 34458 34458 0.032851453345756454 PAVHASLDKF 10 Unmodified _PAVHASLDKF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN48_class_I_Rep_3 7 542.7919921875 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 36.238 1 39.905 39.405 40.405 3.6667 0 0 0 0.53105 1 5974 5974 5.2969 0.54088 1 + 29719 5235 18827 18838 34459 34459 0.032851453345756454 PAVHASLDKF 10 Unmodified _PAVHASLDKF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 542.792924 1083.57129 0.42118 0.00022861 1.4418 0.0007826 1.863 0.0010112 542.7931667038661 36.529 0.043919 40.196 40.171 40.215 3.6667 0.053705 0.00040561 NaN 5.2969 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 52160 + 29720 5235 18827 18838 0.032851453345756454 PAVMGDLVLPF 11 Unmodified _PAVMGDLVLPF_ 0 0 0 ENST00000524856.1_1_11:65381806-65381956:-|nuORF ENST00000524856.1_1_11:65381806-65381956:-|nuORF ENST00000524856.1_1_11:65381806-65381956:-|nuORF MSMS UPN48_class_I_Rep_3 7 579.8170776367188 2 579.81501 1157.61547 NaN NaN NaN NaN NaN NaN NaN 43.344 1 46.982 46.482 47.482 3.6385 0 0 0 0.38417 1 8054 8054 3.2813 0.78282 1 29721 7253 18828 18839 34460 34460 0.04296413436509283 PAVTPHSPYL 10 Unmodified _PAVTPHSPYL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MULTI-MSMS UPN46_class_I_Rep_3 1 541.2879638671875 2 541.287474 1080.5604 0.31586 0.00017097 -0.076022 -4.115E-05 0.23984 0.00012982 541.2872794110338 68.691 0.376 68.691 68.481 68.857 0 53 36 2 0 0 0 0.35076 1 15653 15653 24.021 2.4836 1 178910 + 29722 20124 18829 18840 34461 34461 0.023337429602634074 PAVTPHSPYL 10 Unmodified _PAVTPHSPYL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MSMS UPN46_class_I_Rep_3 1 541.2880249023438 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 68.725 1 68.725 68.225 69.225 0 0 0 0 0.53105 1 15709 15709 18.146 0 1 + 29723 20124 18829 18840 34462 34462 0.023337429602634074 PAVTPHSPYL 10 Unmodified _PAVTPHSPYL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MSMS UPN48_class_I_Rep_2 6 541.2880859375 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 63.309 1 66.783 66.283 67.283 3.4738 0 0 0 0.53105 1 14222 14222 9.3831 0 1 + 29724 20124 18829 18840 34463 34463 0.023337429602634074 PAVTPHSPYL 10 Unmodified _PAVTPHSPYL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MULTI-MSMS UPN48_class_I_Rep_3 7 541.2870483398438 2 541.287474 1080.5604 0.55073 0.0002981 -0.68559 -0.0003711 -0.13486 -7.2999E-05 541.2870979825243 63.27 0.30819 66.779 66.667 66.975 3.5091 32 24 2 0 0 0 0.47413 2 14186 14115;14186 13.906 0.86358 1 65201 + 29725 20124 18829 18840 34464;34465 34465 0.023337429602634074 PAWLLLRRL 9 Unmodified _PAWLLLRRL_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 569.8692016601562 2 569.366393 1136.71823 0.39999 0.00022774 1.9651 0.0011188 2.365 0.0013466 569.3677082295801 108.46 0.12869 112.09 111.99 112.12 3.6313 16 9 3 0 0 0 0.50015 1 26248 26248 0.6015 0 1 1393400 + 29726 22606 18830 18841 34466 34466 0.1553428701017765 PAWLLLRRL 9 Unmodified _PAWLLLRRL_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 569.366393 1136.71823 0.48924 0.00027856 2.1431 0.0012202 2.6324 0.0014988 569.3680804473388 108.47 0.094788 112.1 112.04 112.13 3.6355 0.038622 -0.00027005 NaN 0.6015 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1320700 + 29727 22606 18830 18841 0.1553428701017765 PAWLLLRRL 9 Unmodified _PAWLLLRRL_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 569.366393 1136.71823 0.63486 0.00036147 2.542 0.0014473 3.1768 0.0018088 569.8686643507355 108.47 0.089432 112.01 111.95 112.04 3.5333 -0.057542 0.00018415 NaN 0.6015 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1349100 + 29728 22606 18830 18841 0.1553428701017765 PAWLLLRRL 9 Unmodified _PAWLLLRRL_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 569.366393 1136.71823 0.50485 0.00028744 3.0598 0.0017421 3.5646 0.0020296 569.3682698566421 108.48 0.10099 112.02 111.94 112.05 3.5382 -0.043956 0.00077376 NaN 0.6015 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 733600 + 29729 22606 18830 18841 0.1553428701017765 PAWLLLRRL 9 Unmodified _PAWLLLRRL_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 569.366393 1136.71823 0.39999 0.00022774 1.9651 0.0011188 2.365 0.0013466 569.3677082295801 108.46 0.12869 112.09 111.99 112.12 3.6313 0.02638 -0.00047281 NaN 0.6015 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1393400 + 29730 22606 18830 18841 0.1553428701017765 PAWLLLRRL 9 Unmodified _PAWLLLRRL_ 0 0 0 REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF REV__ENST00000486847.2_1_19:12774617-12777525:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 569.366393 1136.71823 0.48599 0.00027671 2.5473 0.0014504 3.0333 0.0017271 569.3680258875884 108.43 0.056953 112.1 112.07 112.12 3.6746 0.036496 0.0001902 NaN 0.6015 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1212500 + 29731 22606 18830 18841 0.1553428701017765 PAWTTRVRLR 10 Unmodified _PAWTTRVRLR_ 0 0 0 AluSz_dup21752|chr3:195314264-195314568:-|1.1855276830729662|0.0435772542824864|4.77|151.0|3|1|sense AluSz_dup21752|chr3:195314264-195314568:-|1.1855276830729662|0.0435772542824864|4.77|151.0|3|1|sense AluSz_dup21752|chr3:195314264-195314568:-|1.1855276830729662|0.0435772542824864|4.77|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 628.374267578125 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 33.65 1 33.65 33.15 34.15 0 0 0 0 0.53105 1 5911 5911 0.45834 0 1 29732 341 18831 18842 34467 34467 0.11374698402391914 PAWVLIRC 8 Unmodified _PAWVLIRC_ 0 0 0 ENST00000217233.7_1_20:377461-377566:+|nuORF ENST00000217233.7_1_20:377461-377566:+|nuORF ENST00000217233.7_1_20:377461-377566:+|nuORF MSMS UPN48_class_I_Rep_2 6 479.2712097167969 2 479.270573 956.526593 NaN NaN NaN NaN NaN NaN NaN 37.764 1 41.481 40.981 41.981 3.7164 0 0 0 0.40581 1 6500 6500 2.8892 1.4073 1 29733 5866 18832 18843 34468 34468 0.04659042987520934 PAWWWVWS 8 Unmodified _PAWWWVWS_ 0 0 0 REV__AluYh3a3_dup195|chr11:33265804-33266085:+|1.0646415424322255|0.0557171946277351|4.26|151.0|7|2|sense REV__AluYh3a3_dup195|chr11:33265804-33266085:+|1.0646415424322255|0.0557171946277351|4.26|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 559.2685546875 2 559.266345 1116.51814 NaN NaN NaN NaN NaN NaN NaN 19.711 1 23.249 22.749 23.749 3.5378 0 0 0 0.40738 1 1539 1539 0.79363 0 1 + 29734 17083 18833 18844 34469 34469 -0.0354618765743453 PAYRQTYI 8 Unmodified _PAYRQTYI_ 0 0 0 L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|57|3|sense L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|57|3|sense L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|57|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 505.7651672363281 2 506.266542 1010.51853 0.263 0.00013315 0.016407 8.3062E-06 0.2794 0.00014145 506.2665909299842 73.877 0.10593 77.114 77.076 77.182 3.2363 15 9 3 0 0 0 0.72333 1 18267 18267 4.756 2.1785 1 126490 29735 10415 18834 18845 34470 34470 0.01369187271757255 PCAKIISIL 9 Unmodified _PCAKIISIL_ 0 0 0 L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|176|3|sense L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|176|3|sense L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|176|3|sense MSMS UPN47_class_I_Rep_2 3 479.2951354980469 2 479.293714 956.572874 NaN NaN NaN NaN NaN NaN NaN 17.447 1 20.834 20.334 21.334 3.387 0 0 0 0.40038 1 1306 1306 0.6015 0 1 29736 14381 18835 18846 34471 34471 0.09285063098980118 PCAKLHHW 8 Unmodified _PCAKLHHW_ 0 0 0 REV__MLT1G3_dup2072|chr13:50121606-50121842:+|1.2117612063933096|0.0324930219546676|5.22|150.0|16|3|anti-sense REV__MLT1G3_dup2072|chr13:50121606-50121842:+|1.2117612063933096|0.0324930219546676|5.22|150.0|16|3|anti-sense MSMS UPN47_class_I_Rep_2 3 496.251953125 2 496.250172 990.48579 NaN NaN NaN NaN NaN NaN NaN 57.484 1 60.776 60.276 61.276 3.2912 0 0 0 0.40738 1 13239 13239 0.79363 0 1 + 29737 31737 18836 18847 34472 34472 -0.00983298332096183 PCCAIKHK 8 Unmodified _PCCAIKHK_ 0 0 0 L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|69|1|anti-sense L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|69|1|anti-sense L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|69|1|anti-sense MSMS UPN47_class_I_Rep_3 4 450.2816467285156 2 450.233133 898.451713 NaN NaN NaN NaN NaN NaN NaN 47.404 1 50.644 50.144 51.144 3.2405 0 0 0 0.40746 1 10227 10227 0.69038 0 1 29738 9391 18837 18848 34473 34473 -0.001574628153548474 PCCCLPPV 8 Unmodified _PCCCLPPV_ 0 0 0 ENST00000465070.5_1_2:145271084-145271330:-|nuORF ENST00000465070.5_1_2:145271084-145271330:-|nuORF ENST00000465070.5_1_2:145271084-145271330:-|nuORF MSMS UPN46_class_I_Rep_3 1 416.1836853027344 2 416.18172 830.348888 NaN NaN NaN NaN NaN NaN NaN 83.905 1 83.905 83.405 84.405 0 0 0 0 0.40738 1 19946 19946 0.79363 0.10326 1 29739 6887 18838 18849 34474 34474 -0.07307291598328902 PCCCPCCSCC 10 Unmodified _PCCCPCCSCC_ 0 0 0 ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF ENST00000608825.1_3_7:99954396-99956429:+|nuORF MSMS UPN46_class_I_Rep_3 1 511.1153869628906 2 511.113483 1020.21241 NaN NaN NaN NaN NaN NaN NaN 40.984 1 40.984 40.484 41.484 0 0 0 0 0.53105 1 7995 7995 0 0 1 29740 6818 18839 18850 34475 34475 -0.29688556478674855 PCCLLWKG 8 Unmodified _PCCLLWKG_ 0 0 0 ENST00000377575.2_1_6:26545813-26545903:+|nuORF ENST00000377575.2_1_6:26545813-26545903:+|nuORF ENST00000377575.2_1_6:26545813-26545903:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 460.78271484375 2 460.230059 918.445565 0.17922 8.248E-05 -1.0155 -0.00046738 -0.83632 -0.0003849 460.22953778202117 109.22 0.11462 112.89 112.81 112.93 3.6715 19 14 2 0 0 0 0.72333 1 25996 25996 2.5775 2.5775 1 1019400 29741 6462 18840 18851 34476 34476 -0.016919810468721153 PCFFRFLLRQA 11 Unmodified _PCFFRFLLRQA_ 0 0 0 REV__L1PB1_dup4754|chr6:4842265-4844381:-|1.345692351313443|0.012764688755693|6.72|151.0|92|1|anti-sense REV__L1PB1_dup4754|chr6:4842265-4844381:-|1.345692351313443|0.012764688755693|6.72|151.0|92|1|anti-sense MSMS UPN48_class_I_Rep_2 6 466.58868408203125 3 466.588542 1396.7438 NaN NaN NaN NaN NaN NaN NaN 53.228 1 56.838 56.338 57.338 3.6098 0 0 0 0.38417 1 11135 11135 1.1098 0 1 + 29742 30410 18841 18852 34477 34477 0.061293934702916886 PCFRANLFY 9 Unmodified _PCFRANLFY_ 0 0 0 nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5 nc|ENSG00000108469|O94762-2|RECQL5 nc|ENSG00000108469|O94762-2|RECQL5 MSMS UPN47_class_I_Rep_3 4 565.7774658203125 2 565.776219 1129.53789 NaN NaN NaN NaN NaN NaN NaN 37.092 1 40.339 39.839 40.839 3.247 0 0 0 0.38478 1 7072 7072 4.3292 0 1 29743 1866 18842 18853 34478 34478 -0.021701797089917818 PCFWLTYT 8 Unmodified _PCFWLTYT_ 0 0 0 REV__MLT2B3_dup41|chr1:36240096-36240673:-|1.9299195928174857|0.0137758533934235|7.13|151.0|20|3|sense REV__MLT2B3_dup41|chr1:36240096-36240673:-|1.9299195928174857|0.0137758533934235|7.13|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 515.7381591796875 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 33.24 1 36.688 36.188 37.188 3.4474 0 0 0 0.40738 1 5863 5863 0.79363 0 1 + 29744 31823 18843 18854 34479 34479 -0.050563622402250985 PCGPIWAR 8 Unmodified _PCGPIWAR_ 0 0 0 REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF MSMS UPN48_class_I_Rep_1 5 450.23101806640625 2 450.231448 898.448342 NaN NaN NaN NaN NaN NaN NaN 47.948 1 51.47 50.97 51.97 3.5219 0 0 0 0.40625 1 9530 9530 2.3027 0 1 + 29745 21894 18844 18855 34480 34480 -0.004943895977135071 PCHCFCQCWH 10 Unmodified _PCHCFCQCWH_ 0 0 0 ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF ENST00000469182.1_1_6:31610750-31613330:-|nuORF MSMS UPN47_class_I_Rep_1 2 421.82281494140625 3 421.815341 1262.42419 NaN NaN NaN NaN NaN NaN NaN 111.43 1 115 114.5 115.5 3.572 0 0 0 0.53105 1 27490 27490 0 0 1 29746 6916 18845 18856 34481 34481 -0.1965205740955298 PCHCTPSMDDR 11 Unmodified _PCHCTPSMDDR_ 0 0 0 AluSx1_dup17773|chr3:5130930-5131204:-|1.099397500570524|0.0143076878883515|6.26|151.0|7|2|sense AluSx1_dup17773|chr3:5130930-5131204:-|1.099397500570524|0.0143076878883515|6.26|151.0|7|2|sense AluSx1_dup17773|chr3:5130930-5131204:-|1.099397500570524|0.0143076878883515|6.26|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 631.2425537109375 2 631.241557 1260.46856 NaN NaN NaN NaN NaN NaN NaN 39.775 1 43.012 42.512 43.512 3.2372 0 0 0 0.38417 1 7896 7896 0.96228 0.36078 1 29747 312 18846 18857 34482 34482 -0.15125374782360268 PCHTCDLRVFS 11 Unmodified _PCHTCDLRVFS_ 0 0 0 ENST00000576603.5_1_17:80889830-80900336:+|nuORF ENST00000576603.5_1_17:80889830-80900336:+|nuORF ENST00000576603.5_1_17:80889830-80900336:+|nuORF MSMS UPN47_class_I_Rep_3 4 639.29443359375 2 639.291908 1276.56926 NaN NaN NaN NaN NaN NaN NaN 66.782 1 69.967 69.467 70.467 3.1853 0 0 0 0.38417 1 16129 16129 1.0715 0.5467 1 29748 7532 18847 18858 34483 34483 -0.05795974737202414 PCILTSKIS 9 Unmodified _PCILTSKIS_ 0 0 0 REV__MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|3|1|sense REV__MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.27166748046875 2 481.272978 960.531403 -0.21003 -0.00010108 -0.10749 -5.1734E-05 -0.31753 -0.00015282 481.272863871794 25.575 0.51664 29.058 28.731 29.248 3.483 81 50 2 0 0 0 0.48643 1 3580 3580 2.0598 0 1 55080 + 29749 31182 18848 18859 34484 34484 0.04955882339629625 PCILWYTY 8 Unmodified _PCILWYTY_ 0 0 0 L1PB1_dup3580|chr4:145018668-145022653:+|1.2346834530511617|0.0672457281842034|4.2|150.0|174|2|anti-sense L1PB1_dup3580|chr4:145018668-145022653:+|1.2346834530511617|0.0672457281842034|4.2|150.0|174|2|anti-sense L1PB1_dup3580|chr4:145018668-145022653:+|1.2346834530511617|0.0672457281842034|4.2|150.0|174|2|anti-sense MSMS UPN48_class_I_Rep_2 6 529.7565307617188 2 529.754421 1057.49429 NaN NaN NaN NaN NaN NaN NaN 96.974 1 100.75 100.25 101.25 3.7804 0 0 0 0.40738 1 23043 23043 0.79363 0.10326 1 29750 15093 18849 18860 34485 34485 -0.03215789206115005 PCINRCYY 8 Unmodified _PCINRCYY_ 0 0 0 REV__L1MA3_dup7778|chr15:63236623-63238155:-|2.337051679933261|0.0254916514504227|6.52|151.0|98|3|anti-sense REV__L1MA3_dup7778|chr15:63236623-63238155:-|2.337051679933261|0.0254916514504227|6.52|151.0|98|3|anti-sense MSMS UPN48_class_I_Rep_3 7 516.226318359375 2 516.225505 1030.43646 NaN NaN NaN NaN NaN NaN NaN 47.599 1 51.233 50.733 51.733 3.6339 0 0 0 0.40364 1 9356 9356 5.7604 0 1 + 29751 25114 18850 18861 34486 34486 -0.07754374403202746 PCIRTINS 8 Unmodified _PCIRTINS_ 0 0 0 REV__L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|113|3|anti-sense REV__L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|113|3|anti-sense MSMS UPN48_class_I_Rep_1 5 452.24102783203125 2 452.23947 902.464386 NaN NaN NaN NaN NaN NaN NaN 77.371 1 80.893 80.393 81.393 3.5221 0 0 0 0.40659 1 18410 18410 1.8442 0 1 + 29752 24748 18851 18862 34487 34487 0.009252718485527112 PCIYFYIW 8 Unmodified _PCIYFYIW_ 0 0 0 ENSG00000155249|ENST00000641172|OR4K1 ENSG00000155249|ENST00000641172|OR4K1 ENSG00000155249|ENST00000641172|OR4K1 MSMS UPN46_class_I_Rep_3 1 552.763916015625 2 552.764789 1103.51502 NaN NaN NaN NaN NaN NaN NaN 13.441 1 13.441 12.941 13.941 0 0 0 0 0.40738 1 385 385 0.79363 0 1 29753 3696 18852 18863 34488 34488 -0.032591988264812244 PCKKKKEIFS 10 Unmodified _PCKKKKEIFS_ 0 0 0 REV__ENST00000252725.9_1_7:98992305-98992383:+|nuORF REV__ENST00000252725.9_1_7:98992305-98992383:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 604.3489990234375 2 604.347009 1206.67946 0.59881 0.00036189 2.7143 0.0016404 3.3132 0.0020023 604.3485346694841 90.513 0.064224 90.513 90.481 90.545 0 9 7 2 0 0 0 0.56333 1 21833 21833 1.4819 0 1 154350 + 29754 21525 18853 18864 34489 34489 0.08439193593471828 PCLDLLWCR 9 Unmodified _PCLDLLWCR_ 0 0 0 REV__L1PREC2_dup4143|chr9:89343347-89344601:-|1.0695802790176967|0.1438745474838|2.89|151.0|74|2|anti-sense REV__L1PREC2_dup4143|chr9:89343347-89344601:-|1.0695802790176967|0.1438745474838|2.89|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_3 4 559.77685546875 2 559.777905 1117.54126 NaN NaN NaN NaN NaN NaN NaN 22.44 1 25.79 25.29 26.29 3.3503 0 0 0 0.39428 1 2686 2686 2.0598 0.40713 1 + 29755 30707 18854 18865 34490 34490 -0.0128125292662844 PCLLMLIIY 9 Unmodified _PCLLMLIIY_ 0 0 0 REV__L1PB1_dup3723|chr4:173218984-173220491:-|1.9038390686358355|0.0998291499757613|4.25|151.0|80|3|anti-sense REV__L1PB1_dup3723|chr4:173218984-173220491:-|1.9038390686358355|0.0998291499757613|4.25|151.0|80|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.8056030273438 2 539.805599 1077.59665 0.47236 0.00025498 -0.63542 -0.000343 -0.16305 -8.8017E-05 539.8052439550352 81.912 0.5534 85.296 84.983 85.537 3.3839 83 62 2 0 0 0 0.088845 1 20451 20451 36.466 7.9793 1 211620 + 29756 30394 18855 18866 34491 34491 0.06095160541144651 PCLPFRRYDWC 11 Unmodified _PCLPFRRYDWC_ 0 0 0 REV__AluJb_dup77578|chr11:47504304-47504607:+|1.2684927145674196|0.008189778073103|7.28|151.0|20|2|anti-sense REV__AluJb_dup77578|chr11:47504304-47504607:+|1.2684927145674196|0.008189778073103|7.28|151.0|20|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 485.5588684082031 3 485.893525 1454.65875 -0.28349 -0.00013775 -1.676 -0.00081434 -1.9594 -0.00095208 485.8927396378846 36.757 0.14077 40.426 40.371 40.512 3.6692 17 11 2 0 0 0 22.551 1 6900 6900 1.4551 0.75745 1 75977 + 29757 16964 18856 18867 34492 34492 -0.05039720057811792 PCLQLKEL 8 Unmodified _PCLQLKEL_ 0 0 0 nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9 nc|ENSG00000131951|Q6ZRR7-2|LRRC9 nc|ENSG00000131951|Q6ZRR7-2|LRRC9 MSMS UPN46_class_I_Rep_3 1 472.2686767578125 2 472.267696 942.520839 NaN NaN NaN NaN NaN NaN NaN 78.307 1 78.307 77.807 78.807 0 0 0 0 0.40738 1 18334 18334 0.79363 0 1 29758 2726 18857 18868 34493 34493 0.04727899685224202 PCLREECRLR 10 Unmodified _PCLREECRLR_ 0 0 0 REV__SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|28|3|sense REV__SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 637.8270874023438 2 637.826449 1273.63834 NaN NaN NaN NaN NaN NaN NaN 86.469 1 90.239 89.739 90.739 3.7701 0 0 0 0.53105 1 20526 20526 2.9952 0.26005 1 + 29759 32186 18858 18869 34494 34494 0.012471092823489016 PCLREECRLR 10 Unmodified _PCLREECRLR_ 0 0 0 REV__SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|28|3|sense REV__SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 637.8289184570312 2 637.826449 1273.63834 NaN NaN NaN NaN NaN NaN NaN 86.49 1 90.26 89.76 90.76 3.7701 0 0 0 0.53105 1 20531 20531 2.9952 0.26005 1 + 29760 32186 18858 18869 34495 34495 0.012471092823489016 PCLVLVHY 8 Unmodified _PCLVLVHY_ 0 0 0 REV__LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|65|3|sense REV__LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|65|3|sense MSMS UPN46_class_I_Rep_3 1 472.2566223144531 2 472.257131 942.499709 NaN NaN NaN NaN NaN NaN NaN 87.577 1 87.577 87.077 88.077 0 0 0 0 0.4032 1 20991 20991 6.3541 3.4649 1 + 29761 30772 18859 18870 34496 34496 0.02615934376342466 PCLWLLML 8 Unmodified _PCLWLLML_ 0 0 0 REV__L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|269|2|anti-sense REV__L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|269|2|anti-sense MSMS UPN48_class_I_Rep_2 6 494.7713928222656 2 494.77156 987.528566 NaN NaN NaN NaN NaN NaN NaN 78.295 1 81.917 81.417 82.417 3.6222 0 0 0 0.40581 1 18571 18571 2.8892 0 1 + 29762 30232 18860 18871 34497 34497 0.03430335681127872 PCMCLWRW 8 Unmodified _PCMCLWRW_ 0 0 0 L1PA13_dup8105|chr17:6908654-6909984:-|1.2305421966269443|0.1187125576004822|3.37|151.0|35|1|anti-sense L1PA13_dup8105|chr17:6908654-6909984:-|1.2305421966269443|0.1187125576004822|3.37|151.0|35|1|anti-sense L1PA13_dup8105|chr17:6908654-6909984:-|1.2305421966269443|0.1187125576004822|3.37|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_2 3 547.7401123046875 2 547.740268 1093.46598 NaN NaN NaN NaN NaN NaN NaN 24.921 1 28.404 27.904 28.904 3.483 0 0 0 0.40738 1 3382 3382 0.79363 0 1 29763 13797 18861 18872 34498 34498 -0.0770113365870202 PCPLLFVQLF 10 Unmodified _PCPLLFVQLF_ 0 0 0 REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|110|2|anti-sense REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|110|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 588.3380737304688 2 588.827921 1175.64129 0.45836 0.00026989 2.0268 0.0011935 2.4852 0.0014633 588.8288361171293 69.087 0.32291 72.542 72.409 72.732 3.4548 36 24 2 0 0 0 0.84575 1 16037 16037 3.5965 0 1 91917 + 29764 27375 18862 18873 34499 34499 0.06049307678836158 PCPLLNVL 8 Unmodified _PCPLLNVL_ 0 0 0 L1ME1_dup19000|chr10:7327700-7328668:-|1.001407595561557|0.0094803180392298|6.72|150.0|55|2|anti-sense L1ME1_dup19000|chr10:7327700-7328668:-|1.001407595561557|0.0094803180392298|6.72|150.0|55|2|anti-sense L1ME1_dup19000|chr10:7327700-7328668:-|1.001407595561557|0.0094803180392298|6.72|150.0|55|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.75885009765625 2 434.751682 867.48881 NaN NaN NaN NaN NaN NaN NaN 79.002 1 79.002 78.502 79.502 0 0 0 0 0.40746 1 18536 18536 0.69038 0 1 29765 12272 18863 18874 34500 34500 0.04976532002069689 PCRAFLFCVL 10 Unmodified _PCRAFLFCVL_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|81|1|anti-sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|81|1|anti-sense MSMS UPN48_class_I_Rep_3 7 584.8020629882812 2 584.803922 1167.59329 NaN NaN NaN NaN NaN NaN NaN 25.585 1 29.354 28.854 29.854 3.769 0 0 0 0.53105 1 3133 3133 1.4819 0.15237 1 + 29766 27343 18864 18875 34501 34501 0.01619910487102061 PCRHDDVF 8 Unmodified _PCRHDDVF_ 0 0 0 ENST00000558590.1_1_14:103394982-103395396:+|nuORF;ENSG00000166126|ENST00000299155|AMN;ENST00000541086.5_1_14:103389974-103397014:+|nuORF ENST00000558590.1_1_14:103394982-103395396:+|nuORF ENST00000558590.1_1_14:103394982-103395396:+|nuORF MSMS UPN46_class_I_Rep_3 1 494.71905517578125 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 111.91 1 111.91 111.41 112.41 0 0 0 0 0.40746 1 27612 27612 0.69038 0 1 29767 4217 18865 18876 34502 34502 -0.07096489190939792 PCRVPLAL 8 Unmodified _PCRVPLAL_ 0 0 0 ENST00000521259.1_1_8:87516185-87516770:+|nuORF ENST00000521259.1_1_8:87516185-87516770:+|nuORF ENST00000521259.1_1_8:87516185-87516770:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7803039550781 2 434.757298 867.500044 0.060474 2.6292E-05 -4.2193 -0.0018344 -4.1588 -0.0018081 434.7565687782894 37.916 0.17891 37.916 37.873 38.052 0 26 17 2 0 0 0 0.72333 1 7203 7203 0.69038 0 1 149230 29768 7231 18866 18877 34503 34503 0.0609935409619311 PCSLFYKRW 9 Unmodified _PCSLFYKRW_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|127|1|anti-sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|127|1|anti-sense MSMS UPN47_class_I_Rep_3 4 600.3056030273438 2 600.305144 1198.59573 NaN NaN NaN NaN NaN NaN NaN 43.961 1 47.203 46.703 47.703 3.2419 0 0 0 0.40038 1 9173 9173 0.6015 0 1 + 29769 24051 18867 18878 34504 34504 0.004380822164421261 PCVTKWIF 8 Unmodified _PCVTKWIF_ 0 0 0 REV__Tigger3d_dup113|chr3:71285935-71286236:-|1.1242072856726404|0.0021521014095955|9.03|150.0|19|1|anti-sense REV__Tigger3d_dup113|chr3:71285935-71286236:-|1.1242072856726404|0.0021521014095955|9.03|150.0|19|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.2646789550781 2 497.264956 992.515359 NaN NaN NaN NaN NaN NaN NaN 56.156 1 59.657 59.157 60.157 3.5014 0 0 0 0.40472 1 12056 12056 4.3292 1.7518 1 + 29770 32771 18868 18879 34505 34505 0.01880220893394835 PCWEVSPRQE 10 Unmodified _PCWEVSPRQE_ 0 0 0 L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|314|2|anti-sense;L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|295|2|anti-sense;L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|167|2|anti-sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|314|2|anti-sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|314|2|anti-sense MSMS UPN47_class_I_Rep_2 3 615.7845458984375 2 615.78223 1229.54991 NaN NaN NaN NaN NaN NaN NaN 19.6 1 22.996 22.496 23.496 3.3963 0 0 0 0.53105 1 1878 1878 3.5965 0.60125 1 29771 13505 18869 18880 34506 34506 -0.05568607756435995 PCWPVRSR 8 Unmodified _PCWPVRSR_ 0 0 0 AluSz_dup57495|chr10:26543185-26543496:+|1.0985374731205355|0.0149223696646567|6.2|151.0|13|1|anti-sense AluSz_dup57495|chr10:26543185-26543496:+|1.0985374731205355|0.0149223696646567|6.2|151.0|13|1|anti-sense AluSz_dup57495|chr10:26543185-26543496:+|1.0985374731205355|0.0149223696646567|6.2|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 500.76068115234375 2 500.760904 999.507254 NaN NaN NaN NaN NaN NaN NaN 106.89 1 110.57 110.07 111.07 3.6724 0 0 0 0.40738 1 26194 26194 0.79363 0 1 29772 355 18870 18881 34507 34507 0.007480866966261601 PDCFPQWLN 9 Unmodified _PDCFPQWLN_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|117|2|anti-sense;L1PA16_dup12165|chr15:49939820-49940570:+|1.5105075870854017|0.0038174538883632|8.63|151.0|35|1|anti-sense;L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|95|1|anti-sense;L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|86|1|anti-sense;L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|147|1|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|117|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|117|2|anti-sense MSMS UPN47_class_I_Rep_1 2 560.251953125 2 560.250034 1118.48552 NaN NaN NaN NaN NaN NaN NaN 37.566 1 41.231 40.731 41.731 3.6652 0 0 0 0.38639 1 7143 7143 3.9444 0.66309 1 29773 13899 18871 18882 34508 34508 -0.06898762842592987 PDCLLKLATF 10 Unmodified _PDCLLKLATF_ 0 0 0 REV__L1MC1_dup5610|chr6:142211730-142212579:+|1.4554738547349766|0.0848072038073338|4.1|151.0|33|1|anti-sense REV__L1MC1_dup5610|chr6:142211730-142212579:+|1.4554738547349766|0.0848072038073338|4.1|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 560.80517578125 2 560.807185 1119.59982 NaN NaN NaN NaN NaN NaN NaN 72.907 1 76.472 75.972 76.972 3.5645 0 0 0 0.53105 1 17093 17093 12.241 0.60036 1 + 29774 26579 18872 18883 34509 34509 0.04480126919474969 PDDSLFPFY 9 Unmodified _PDDSLFPFY_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|128|1|anti-sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|128|1|anti-sense MSMS UPN47_class_I_Rep_1 2 550.749267578125 2 550.75039 1099.48623 NaN NaN NaN NaN NaN NaN NaN 66.997 1 70.358 69.858 70.858 3.3611 0 0 0 0.38299 1 16084 16084 4.756 0.42677 1 + 29775 23545 18873 18884 34510 34510 -0.05953644921874002 PDEEIGPEL 9 Unmodified _PDEEIGPEL_ 0 0 0 REV__ENST00000528777.3_1_12:85556565-85656835:+|nuORF REV__ENST00000528777.3_1_12:85556565-85656835:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 499.7374267578125 2 499.73748 997.460406 0.072872 3.6417E-05 0.025634 1.281E-05 0.098506 4.9227E-05 499.73745729289124 46.953 0.76966 50.305 49.931 50.7 3.3515 92 55 2 0 0 0 0.46869 1 10077 10077 3.9444 0 1 198780 + 29776 22830 18874 18885 34511 34511 -0.038425391641794704 PDEQFTHML 9 Unmodified _PDEQFTHML_ 0 0 0 ENSG00000130508|ENST00000252804|PXDN ENSG00000130508|ENST00000252804|PXDN ENSG00000130508|ENST00000252804|PXDN MSMS UPN47_class_I_Rep_3 4 559.2529296875 2 559.252774 1116.491 NaN NaN NaN NaN NaN NaN NaN 84.569 1 87.931 87.431 88.431 3.3615 0 0 0 0.39598 1 21229 21229 1.6526 0 1 29777 2658 18875 18886 34512 34512 -0.06259084050793717 PDFKQHVQI 9 Unmodified _PDFKQHVQI_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;nc|ENSG00000127804|Q86W50-2|METTL16;ENST00000577148.1_1_17:2380968-2405559:-|nuORF ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MULTI-MSMS UPN47_class_I_Rep_2 3 556.298583984375 2 556.298373 1110.58219 0.47235 0.00026277 0.029839 1.6599E-05 0.50218 0.00027936 556.2980148306252 60.986 0.25354 64.251 64.152 64.406 3.2654 32 24 2 0 0 0 0.43982 1 14274 14274 5.7319 0.43497 1 102940 29778 2573 18876 18887 34513 34513 0.03132547708855782 PDFVSKKVF 9 Unmodified _PDFVSKKVF_ 0 0 0 REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|132|3|anti-sense REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|132|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 533.3406982421875 2 533.800217 1065.58588 0.54321 0.00028996 -0.41239 -0.00022013 0.13082 6.9832E-05 533.7999533280486 89.886 0.23218 93.733 93.604 93.836 3.847 58 32 2 0 0 0 0.099407 1 21326 21326 13.906 8.1742 1 162180 + 29779 26551 18877 18888 34514 34514 0.055712174827021954 PDFVSKKVF 9 Unmodified _PDFVSKKVF_ 0 0 0 REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|132|3|anti-sense REV__L1MC1_dup4057|chr5:87291925-87294179:-|1.6792140716735684|0.1336631857305359|3.65|151.0|132|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 533.800217 1065.58588 0.43952 0.00023461 -0.17881 -9.5449E-05 0.26071 0.00013917 533.800261600045 89.871 0.12901 93.618 93.515 93.644 3.7471 -0.057317 0.00019524 NaN 13.906 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 100190 + 29780 26551 18877 18888 0.055712174827021954 PDGDEWSDCD 10 Unmodified _PDGDEWSDCD_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MSMS UPN47_class_I_Rep_3 4 569.7588500976562 2 569.685118 1137.35568 NaN NaN NaN NaN NaN NaN NaN 15.629 1 18.995 18.495 19.495 3.3659 0 0 0 0.53105 1 836 836 0 0 1 + 29781 19485 18878 18889 34515 34515 -0.20750028703059797 PDGEKKAY 8 Unmodified _PDGEKKAY_ 0 0 0 ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000514593.2_1_8:6756456-6756516:-|nuORF;ENST00000471152.1_2_3:161146917-161147007:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF ENST00000416139.1_1_1:212482446-212482779:-|nuORF ENST00000416139.1_1_1:212482446-212482779:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 454.2796630859375 2 454.229625 906.444697 -0.51319 -0.00023311 0.13158 5.9765E-05 -0.38161 -0.00017334 454.2294993048646 40.616 0.42683 43.987 43.84 44.267 3.3712 44 31 2 0 0 0 0.72333 1 8098 8098 4.756 0 1 47109 29782 5423 18879 18890 34516 34516 -0.012267808905789934 PDGIICCYLF 10 Unmodified _PDGIICCYLF_ 0 0 0 REV__ENST00000464954.1_1_1:167691199-167735064:+|nuORF REV__ENST00000464954.1_1_1:167691199-167735064:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 571.8130493164062 2 572.264296 1142.51404 0.40301 0.00023063 -0.82063 -0.00046962 -0.41762 -0.00023899 572.263732138382 69.478 0.82611 72.754 72.433 73.26 3.2761 141 67 3 0 0 0 0.53188 1 16785 16785 7.9102 2.6795 1 291780 + 29783 22462 18880 18891 34517 34517 -0.05151781257677612 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 465.2065124511719 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.743 1 100.52 100.02 101.02 3.7767 0 0 0 0.4044 1 23983 23983 4.756 0 1 + 29784 30851 18881 18892 34518 34518 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 465.2062072753906 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.602 1 100.08 99.581 100.58 3.4791 0 0 0 0.39819 1 23731 23731 8.5933 0.68312 1 + 29785 30851 18881 18892 34519 34519 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 465.20709228515625 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.799 1 100.28 99.778 100.78 3.4791 0 0 0 0.39819 1 23774 23774 8.5933 3.8373 1 + 29786 30851 18881 18892 34520 34520 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 465.2057800292969 2 465.207304 928.400055 -0.016755 -7.7946E-06 -0.81346 -0.00037843 -0.83021 -0.00038622 465.2069857113561 96.764 0.17055 100.18 100.1 100.27 3.414 25 19 2 0 0 0 0.82752 2 23981 23981;24002 13.508 5.5977 1 751610 + 29787 30851 18881 18892 34521;34522 34521 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 465.2063903808594 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.722 1 100.33 99.833 100.83 3.6111 0 0 0 0.40625 1 23314 23314 2.3027 1.5091 1 + 29788 30851 18881 18892 34523 34523 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 465.2062072753906 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.286 1 100.07 99.567 100.57 3.7804 0 0 0 0.39819 1 22870 22870 8.5933 3.3626 1 + 29789 30851 18881 18892 34524 34524 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 465.2066345214844 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.423 1 100.2 99.703 100.7 3.7804 0 0 0 0.36148 1 22904 22904 19.439 6.9074 1 + 29790 30851 18881 18892 34525 34525 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 465.20501708984375 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.438 1 100.22 99.718 100.72 3.7804 0 0 0 0.4044 1 22908 22908 4.756 2.1785 1 + 29791 30851 18881 18892 34526 34526 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 465.2107849121094 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.443 1 100.22 99.723 100.72 3.7804 0 0 0 0.38547 1 22910 22910 13.508 4.1604 1 + 29792 30851 18881 18892 34527 34527 -0.06700928028249109 PDGMFLYS 8 Unmodified _PDGMFLYS_ 0 0 0 REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense REV__LTR16A2_dup1229|chr12:104631349-104631690:+|1.9436277628750545|0.0060244822336205|8.33|150.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 465.2076110839844 2 465.207304 928.400055 NaN NaN NaN NaN NaN NaN NaN 96.341 1 100.25 99.75 100.75 3.9084 0 0 0 0.40625 1 22830 22830 2.3027 0.24298 1 + 29793 30851 18881 18892 34528 34528 -0.06700928028249109 PDHESPSQES 10 Unmodified _PDHESPSQES_ 0 0 0 nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1;ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 MSMS UPN46_class_I_Rep_3 1 556.7281494140625 2 556.728175 1111.4418 NaN NaN NaN NaN NaN NaN NaN 113.53 1 113.53 113.03 114.03 0 0 0 0 0.53105 1 28041 28041 3.5965 1.2938 1 29794 1377 18882 18893 34529 34529 -0.10946700806039189 PDHVCGPWCA 10 Unmodified _PDHVCGPWCA_ 0 0 0 ENST00000373381.8_2_1:33999406-34006153:-|nuORF ENST00000373381.8_2_1:33999406-34006153:-|nuORF ENST00000373381.8_2_1:33999406-34006153:-|nuORF MSMS UPN47_class_I_Rep_3 4 542.7197875976562 2 542.720587 1083.42662 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.36 117.86 118.86 3.4802 0 0 0 0.53105 1 28230 28230 1.6526 0 1 29795 6413 18883 18894 34530 34530 -0.11175562408584483 PDIFFNLVFY 10 Unmodified _PDIFFNLVFY_ 0 0 0 REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|160|2|anti-sense REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|160|2|anti-sense MSMS UPN48_class_I_Rep_2 6 637.8279418945312 2 637.826432 1273.63831 NaN NaN NaN NaN NaN NaN NaN 53.568 1 57.178 56.678 57.678 3.6098 0 0 0 0.53105 1 11240 11240 1.3295 0 1 + 29796 24795 18884 18895 34531 34531 0.01243755825680637 PDIFLCWK 8 Unmodified _PDIFLCWK_ 0 0 0 L1MEf_dup5233|chr7:87891206-87891946:-|1.05237688339488|0.0939314730185911|3.49|151.0|43|2|anti-sense L1MEf_dup5233|chr7:87891206-87891946:-|1.05237688339488|0.0939314730185911|3.49|151.0|43|2|anti-sense L1MEf_dup5233|chr7:87891206-87891946:-|1.05237688339488|0.0939314730185911|3.49|151.0|43|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.26251220703125 2 511.262413 1020.51027 0.36123 0.00018468 0.058802 3.0063E-05 0.42003 0.00021475 511.26240988592843 63.826 0.073952 67.301 67.276 67.35 3.4743 8 5 2 0 0 0 0.82752 1 14385 14385 2.3027 0 1 63270 29797 13295 18885 18896 34532 34532 0.0008391703078132196 PDIKLLLG 8 Unmodified _PDIKLLLG_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MSMS UPN48_class_I_Rep_1 5 434.7799987792969 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 77.399 1 80.921 80.421 81.421 3.5221 0 0 0 0.40625 1 18418 18418 2.3027 0 1 + 29798 20307 18886 18897 34533 34533 0.10388447425305003 PDIMSIIMY 9 Unmodified _PDIMSIIMY_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|7|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|7|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 541.7667846679688 2 541.766671 1081.51879 0.47918 0.0002596 3.3748 0.0018284 3.854 0.002088 541.7665899702919 56.463 1.0163 59.764 59.237 60.253 3.3009 176 70 4 0 0 0 0.40174 1 12905 12905 7.9102 1.187 1 589340 29799 11754 18887 18898 34534 34534 -0.018708971148953424 PDIQPHPLLS 10 Unmodified _PDIQPHPLLS_ 0 0 0 REV__L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|366|3|anti-sense REV__L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|366|3|anti-sense MSMS UPN47_class_I_Rep_1 2 558.8040771484375 2 558.806031 1115.59751 NaN NaN NaN NaN NaN NaN NaN 25.07 1 28.82 28.32 29.32 3.7495 0 0 0 0.53105 1 3380 3380 2.9952 0 1 + 29800 29164 18888 18899 34535 34535 0.04433414506047484 PDIVILPSKRN 11 Unmodified _PDIVILPSKRN_ 0 0 0 REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|45|1|sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|45|1|sense MSMS UPN48_class_I_Rep_3 7 626.3873901367188 2 626.374612 1250.73467 NaN NaN NaN NaN NaN NaN NaN 105.43 1 109.13 108.63 109.63 3.702 0 0 0 0.38417 1 24880 24880 2.7352 1.0826 1 + 29801 27621 18889 18900 34536 34536 0.11933323385642325 PDKENKSYTF 10 Unmodified _PDKENKSYTF_ 0 0 0 L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|52|2|anti-sense L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|52|2|anti-sense L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_1 2 614.7957763671875 2 614.79586 1227.57717 NaN NaN NaN NaN NaN NaN NaN 54.298 1 57.799 57.299 58.299 3.5014 0 0 0 0.53105 1 12237 12237 0 0 1 29802 10739 18890 18901 34537 34537 -0.02751800944452043 PDKHKIKI 8 Unmodified _PDKHKIKI_ 0 0 0 REV__L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|58|2|sense REV__L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|58|2|sense MSMS UPN48_class_I_Rep_3 7 489.8062744140625 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 102.69 1 106.47 105.97 106.97 3.776 0 0 0 0.40746 1 24265 24265 0.69038 0 1 + 29803 25011 18891 18902 34538 34538 0.11250343439451171 PDKLNSRQ 8 Unmodified _PDKLNSRQ_ 0 0 0 REV__nc|ENSG00000085276|Q03112-9|MECOM REV__nc|ENSG00000085276|Q03112-9|MECOM MSMS UPN46_class_I_Rep_3 1 479.25848388671875 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 21.889 1 21.889 21.389 22.389 0 0 0 0 0.40659 1 2516 2516 1.8442 0 1 + 29804 17950 18892 18903 34539 34539 0.023951151236246915 PDKYHACA 8 Unmodified _PDKYHACA_ 0 0 0 REV__ENST00000582788.5_1_17:37872360-37873734:+|nuORF REV__ENST00000582788.5_1_17:37872360-37873734:+|nuORF MSMS UPN48_class_I_Rep_1 5 452.7010192871094 2 452.70272 903.390887 NaN NaN NaN NaN NaN NaN NaN 82.235 1 85.81 85.31 86.31 3.5753 0 0 0 0.40738 1 19634 19634 0.79363 0 1 + 29805 19390 18893 18904 34540 34540 -0.0646727659394628 PDLDSRPLGK 10 Unmodified _PDLDSRPLGK_ 0 0 0 ENST00000397497.8_2_8:27288464-27288860:+|nuORF ENST00000397497.8_2_8:27288464-27288860:+|nuORF ENST00000397497.8_2_8:27288464-27288860:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 549.3018188476562 2 549.301113 1096.58767 0.61737 0.00033912 0.36716 0.00020168 0.98453 0.00054081 549.3014016932093 98.984 0.018906 102.47 102.46 102.48 3.4897 4 2 2 0 0 0 0.56078 1 24255 24255 3.2813 0 1 102990 29806 6573 18894 18905 34541 34541 0.04324226500671102 PDLDSRPLGK 10 Unmodified _PDLDSRPLGK_ 0 0 0 ENST00000397497.8_2_8:27288464-27288860:+|nuORF ENST00000397497.8_2_8:27288464-27288860:+|nuORF ENST00000397497.8_2_8:27288464-27288860:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 549.301113 1096.58767 0.48974 0.00026902 -1.0214 -0.00056104 -0.53163 -0.00029202 549.8026674587359 98.676 0.040047 102.45 102.43 102.47 3.7707 -0.013231 -0.0011672 NaN 3.2813 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 84440 29807 6573 18894 18905 0.04324226500671102 PDLGPPPRNS 10 Unmodified _PDLGPPPRNS_ 0 0 0 REV__ENST00000306145.9_1_8:145690906-145691050:-|nuORF REV__ENST00000306145.9_1_8:145690906-145691050:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 525.304443359375 2 525.272355 1048.53016 0.24634 0.00012939 -0.89172 -0.0004684 -0.64538 -0.000339 525.7733994549418 58.3 0.090942 61.466 61.419 61.51 3.1658 9 5 3 0 0 0 0.84575 1 13527 13527 5.2969 0.96765 1 38578 + 29808 21687 18895 18906 34542 34542 0.00783384295095857 PDLLSFSNPD 10 Unmodified _PDLLSFSNPD_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|35|3|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 552.7642211914062 2 552.764029 1103.5135 NaN NaN NaN NaN NaN NaN NaN 49.675 1 53.334 52.834 53.834 3.6592 0 0 0 0.53105 1 10826 10826 1.3295 0.13619 1 + 29809 23699 18896 18907 34543 34543 -0.03411161381518468 PDLMQKASEKF 11 Unmodified _PDLMQKASEKF_ 0 0 0 REV__nc|ENSG00000148773|P46013-2|MKI67 REV__nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS UPN48_class_I_Rep_3 7 647.3297119140625 2 647.329013 1292.64347 0.60461 0.00039138 0.30685 0.00019863 0.91146 0.00059001 647.3291055832264 58.749 1.2735 62.272 61.761 63.034 3.5231 192 86 3 0 0 0 0.2744 1 12665 12665 20.581 3.1383 1 1313000 + 29810 17422 18897 18908 34544 34544 0.008856916259674108 PDLRGKVVN 9 Unmodified _PDLRGKVVN_ 0 0 0 L1MC3_dup11056|chr15:72746768-72747719:+|1.2523992111047912|0.13066942285289|3.26|150.0|63|3|anti-sense L1MC3_dup11056|chr15:72746768-72747719:+|1.2523992111047912|0.13066942285289|3.26|150.0|63|3|anti-sense L1MC3_dup11056|chr15:72746768-72747719:+|1.2523992111047912|0.13066942285289|3.26|150.0|63|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.2754211425781 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 36.108 1 36.108 35.608 36.608 0 0 0 0 0.3967 1 6655 6655 1.4819 0 1 29811 11296 18898 18909 34545 34545 0.07320565054430972 PDLVHLEAR 9 Unmodified _PDLVHLEAR_ 0 0 0 nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 nc|ENSG00000108018|Q8WY21-4|SORCS1 MSMS UPN47_class_I_Rep_2 3 525.2700805664062 2 525.290548 1048.56654 NaN NaN NaN NaN NaN NaN NaN 58.7 1 61.982 61.482 62.482 3.2818 0 0 0 0.38478 1 13608 13608 4.3292 0 1 29812 1850 18899 18910 34546 34546 0.044202611917853574 PDMEEDDEE 9 Unmodified _PDMEEDDEE_ 0 0 0 REV__ENSG00000128564|ENST00000249330|VGF REV__ENSG00000128564|ENST00000249330|VGF MSMS UPN47_class_I_Rep_2 3 554.6866455078125 2 554.684784 1107.35501 NaN NaN NaN NaN NaN NaN NaN 23.131 1 26.576 26.076 27.076 3.4447 0 0 0 0.4007 1 2863 2863 0.52476 0.066424 1 + 29813 18898 18900 18911 34547 34547 -0.19436868142770436 PDNLLNRPSV 10 Unmodified _PDNLLNRPSV_ 0 0 0 nc|ENSG00000067992|Q15120-2|PDK3;ENSG00000067992|ENST00000379162|PDK3;ENST00000493226.1_1_X:24512890-24517018:+|nuORF nc|ENSG00000067992|Q15120-2|PDK3 nc|ENSG00000067992|Q15120-2|PDK3 MULTI-MSMS UPN47_class_I_Rep_1 2 562.8070068359375 2 562.806562 1123.59857 -0.06735 -3.7905E-05 0.030542 1.7189E-05 -0.036808 -2.0716E-05 562.8065685720185 28.278 0.58634 32.044 31.767 32.353 3.7662 79 46 2 0 0 0 0.56189 1 4310 4310 2.4985 0.65425 1 97039 29814 1042 18901 18912 34548 34548 0.04171628874951239 PDPFLLNWQ 9 Unmodified _PDPFLLNWQ_ 0 0 0 L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|8|2|sense L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|8|2|sense L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 565.28759765625 2 565.287474 1128.5604 0.46842 0.00026479 0.19201 0.00010854 0.66043 0.00037333 565.2873656662244 64.409 0.71072 67.917 67.589 68.299 3.5083 136 63 3 0 0 0 0.26948 1 14468 14468 15.847 1.0089 1 299590 29815 13713 18902 18913 34549 34549 0.001257429602674165 PDPFLLNWQ 9 Unmodified _PDPFLLNWQ_ 0 0 0 L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|8|2|sense L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|8|2|sense L1PA12_dup195|chr2:97269872-97270354:+|1.7341775002963773|0.1891779273051576|3.2|150.0|8|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 565.287474 1128.5604 0.46842 0.00026479 0.19201 0.00010854 0.66043 0.00037333 565.2873656662244 64.409 0.71072 67.917 67.589 68.299 3.5083 -0.098968 4.5802E-05 NaN 15.847 136 63 3 NaN NaN NaN NaN 0 NaN NaN 0 299590 29816 13713 18902 18913 0.001257429602674165 PDPNEFVIR 9 Unmodified _PDPNEFVIR_ 0 0 0 REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF MSMS UPN47_class_I_Rep_1 2 543.78173828125 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 47.16 1 50.855 50.355 51.355 3.6951 0 0 0 0.37891 1 10072 10072 5.7319 0.43497 1 + 29817 18423 18903 18914 34550 34550 0.01120554954900399 PDPNEFVIR 9 Unmodified _PDPNEFVIR_ 0 0 0 REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF MSMS UPN47_class_I_Rep_2 3 543.7824096679688 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 47.193 1 50.544 50.044 51.044 3.3515 0 0 0 0.31276 1 10110 10110 10.074 0.6908 1 + 29818 18423 18903 18914 34551 34551 0.01120554954900399 PDPNEFVIR 9 Unmodified _PDPNEFVIR_ 0 0 0 REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 543.7828979492188 2 543.782556 1085.55056 0.36309 0.00019744 0.24524 0.00013336 0.60833 0.0003308 543.7826320428272 47.852 0.53787 51.093 51.03 51.568 3.2405 55 42 2 0 0 0 0.43153 1 10390 10390 6.2058 1.4498 1 125570 + 29819 18423 18903 18914 34552 34552 0.01120554954900399 PDPYVKIYL 9 Unmodified _PDPYVKIYL_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MSMS UPN47_class_I_Rep_1 2 554.3060913085938 2 554.307875 1106.6012 NaN NaN NaN NaN NaN NaN NaN 69.746 1 73.114 72.614 73.614 3.3678 0 0 0 0.31276 1 16917 16917 10.074 0 1 29820 2789 18904 18915 34553 34553 0.0521608427989122 PDQDQSDEAQ 10 Unmodified _PDQDQSDEAQ_ 0 0 0 nc|ENSG00000170854|Q8IUF8-3|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2 nc|ENSG00000170854|Q8IUF8-3|RIOX2 nc|ENSG00000170854|Q8IUF8-3|RIOX2 MSMS UPN47_class_I_Rep_3 4 566.7213745117188 2 566.723089 1131.43163 NaN NaN NaN NaN NaN NaN NaN 119.2 1 122.62 122.12 123.12 3.4157 0 0 0 0.53105 1 29432 29432 1.4819 0 1 29821 4492 18905 18916 34554 34554 -0.12883308531286275 PDQQRSPF 8 Unmodified _PDQQRSPF_ 0 0 0 REV__L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|297|3|anti-sense REV__L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|297|3|anti-sense MSMS UPN47_class_I_Rep_2 3 487.7520446777344 2 487.738148 973.461744 NaN NaN NaN NaN NaN NaN NaN 23.419 1 26.863 26.363 27.363 3.4447 0 0 0 0.40404 1 2945 2945 5.2307 0 1 + 29822 24776 18906 18917 34555 34555 -0.026048602847595248 PDQWHGQRLR 10 Unmodified _PDQWHGQRLR_ 0 0 0 REV__ENSG00000119408.17,NEK6,chr9,+,I3.1,124258362,124261472|39|4.77|1|intron REV__ENSG00000119408.17,NEK6,chr9,+,I3.1,124258362,124261472|39|4.77|1|intron MSMS UPN48_class_I_Rep_2 6 646.8336181640625 2 646.833977 1291.6534 NaN NaN NaN NaN NaN NaN NaN 86.682 1 90.399 89.899 90.899 3.7171 0 0 0 0.53105 1 20634 20634 8.1555 2.4237 1 + 29823 18672 18907 18918 34556 34556 0.0192406046621727 PDRFSAEFHH 10 Unmodified _PDRFSAEFHH_ 0 0 0 L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|60|2|sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|60|2|sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|60|2|sense MSMS UPN47_class_I_Rep_2 3 621.785400390625 2 621.786161 1241.55777 NaN NaN NaN NaN NaN NaN NaN 36.791 1 40.19 39.69 40.69 3.3988 0 0 0 0.53105 1 6942 6942 1.3295 0 1 29824 13966 18908 18919 34557 34557 -0.053347124446645466 PDRRCVLWDV 10 Unmodified _PDRRCVLWDV_ 0 0 0 REV__L1M4b_dup1828|chr7:128573749-128574294:-|1.2191911372378872|0.0133340730429923|6.51|151.0|4|1|sense REV__L1M4b_dup1828|chr7:128573749-128574294:-|1.2191911372378872|0.0133340730429923|6.51|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 629.8203735351562 2 629.821689 1257.62883 NaN NaN NaN NaN NaN NaN NaN 44.262 1 47.776 47.276 48.276 3.5132 0 0 0 0.53105 1 8404 8404 1.4819 0.15237 1 + 29825 24530 18909 18920 34558 34558 0.010316642684756516 PDSELEHKQ 9 Unmodified _PDSELEHKQ_ 0 0 0 REV__L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense REV__L1MC5_dup15060|chr22:24401089-24401466:-|2.04360594078148|0.0659904281665937|4.95|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.75927734375 2 541.759278 1081.504 -0.023564 -1.2766E-05 0.42302 0.00022918 0.39946 0.00021641 541.7594800318541 33.206 0.56077 36.905 36.649 37.209 3.6983 83 37 3 0 0 0 0.46869 1 5898 5898 3.9444 0 1 137970 + 29826 27068 18910 18921 34559 34559 -0.033489296670495605 PDSPLHVPNI 10 Unmodified _PDSPLHVPNI_ 0 0 0 REV__Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|84|1|anti-sense REV__Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|84|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.2539672851562 2 544.790381 1087.56621 0.34059 0.00018555 -0.067011 -3.6507E-05 0.27358 0.00014904 544.790360321241 59.576 0.75126 62.741 62.32 63.071 3.1651 81 54 2 0 0 0 0.84575 1 13823 13823 6.2058 0 1 148340 + 29827 32567 18911 18922 34560 34560 0.025928414719373905 PDSWCSWIF 9 Unmodified _PDSWCSWIF_ 0 0 0 REV__HAL1_dup18853|chr15:31356618-31357490:-|1.214769203808401|0.0599430442604741|4.34|151.0|25|1|anti-sense REV__HAL1_dup18853|chr15:31356618-31357490:-|1.214769203808401|0.0599430442604741|4.34|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 570.7147827148438 2 570.744585 1139.47462 NaN NaN NaN NaN NaN NaN NaN 12.515 1 12.515 12.015 13.015 0 0 0 0 0.39518 1 133 133 1.8442 1.2427 1 + 29828 23387 18912 18923 34561 34561 -0.08954165216891852 PDTELGVRRCP 11 Unmodified _PDTELGVRRCP_ 0 0 0 REV__ENST00000483271.1_1_1:246729833-246797398:+|nuORF REV__ENST00000483271.1_1_1:246729833-246797398:+|nuORF MSMS UPN47_class_I_Rep_2 3 621.8046875 2 621.816604 1241.61866 NaN NaN NaN NaN NaN NaN NaN 69.041 1 72.317 71.817 72.817 3.2761 0 0 0 0.38417 1 16743 16743 1.1933 0.23107 1 + 29829 22582 18913 18924 34562 34562 0.00751056543276718 PDTSWHMIW 9 Unmodified _PDTSWHMIW_ 0 0 0 MER119_dup843|chr12:56677354-56677930:-|1.4145614025876845|0.032228902869143|5.46|151.0|36|2|anti-sense MER119_dup843|chr12:56677354-56677930:-|1.4145614025876845|0.032228902869143|5.46|151.0|36|2|anti-sense MER119_dup843|chr12:56677354-56677930:-|1.4145614025876845|0.032228902869143|5.46|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 586.7634887695312 2 586.763309 1171.51206 NaN NaN NaN NaN NaN NaN NaN 34.79 1 38.463 37.963 38.963 3.6735 0 0 0 0.39428 1 5649 5649 2.0598 0 1 29830 15777 18914 18925 34563 34563 -0.06683073951262486 PDTWSKEKK 9 Unmodified _PDTWSKEKK_ 0 0 0 L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|52|2|sense L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|52|2|sense L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|52|2|sense MSMS UPN48_class_I_Rep_2 6 559.7964477539062 2 559.795663 1117.57677 NaN NaN NaN NaN NaN NaN NaN 19.727 1 23.377 22.877 23.877 3.6497 0 0 0 0.39428 1 1559 1559 2.0598 0.40713 1 29831 15237 18915 18926 34564 34564 0.022688241263722375 PDVLYNLCI 9 Unmodified _PDVLYNLCI_ 0 0 0 REV__ENSG00000144015|ENST00000272395|TRIM43 REV__ENSG00000144015|ENST00000272395|TRIM43 MULTI-MSMS UPN47_class_I_Rep_1 2 525.7724609375 2 525.270435 1048.52632 0.33022 0.00017345 -0.0063976 -3.3605E-06 0.32382 0.00017009 525.2703320767129 58.673 0.61355 62.09 61.633 62.247 3.4171 64 40 2 0 0 0 0.46434 1 13483 13483 4.3292 0 1 71916 + 29832 19471 18916 18927 34565 34565 0.0039957847700407 PDVRVLPG 8 Unmodified _PDVRVLPG_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MSMS UPN46_class_I_Rep_3 1 426.7642822265625 2 426.750527 851.486502 NaN NaN NaN NaN NaN NaN NaN 65.854 1 65.854 65.354 66.354 0 0 0 0 0.40604 1 14908 14908 2.5775 0 1 29833 3799 18917 18928 34566 34566 0.05481819588624148 PDWAWPAW 8 Unmodified _PDWAWPAW_ 0 0 0 REV__L1PA7_dup4287|chr5:75564272-75566794:-|1.0255612039892743|0.0525259988001496|4.29|151.0|100|1|anti-sense REV__L1PA7_dup4287|chr5:75564272-75566794:-|1.0255612039892743|0.0525259988001496|4.29|151.0|100|1|anti-sense MSMS UPN48_class_I_Rep_2 6 514.7353515625 2 514.734877 1027.4552 NaN NaN NaN NaN NaN NaN NaN 69.049 1 72.571 72.071 73.071 3.5216 0 0 0 0.40738 1 15968 15968 0.79363 0 1 + 29834 30099 18918 18929 34567 34567 -0.057427534454973284 PDWMFFCC 8 Unmodified _PDWMFFCC_ 0 0 0 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 524.800048828125 2 524.689909 1047.36527 NaN NaN NaN NaN NaN NaN NaN 34.212 1 37.898 37.398 38.398 3.6859 0 0 0 0.40738 1 6126 6126 0.79363 0 1 29835 427 18919 18930 34568 34568 -0.1565221043222209 PDYITTARAY 10 Unmodified _PDYITTARAY_ 0 0 0 REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 585.793212890625 2 585.793121 1169.57169 0.51626 0.00030242 -0.06119 -3.5845E-05 0.45507 0.00026658 585.7925786370781 52.868 1.4109 56.194 55.806 57.217 3.3266 153 99 2 0 0 0 0.53004 1 11976 11976 8.1555 1.4324 1 1108400 + 29836 18687 18920 18931 34569 34569 -0.00631479736239271 PDYITTARAY 10 Unmodified _PDYITTARAY_ 0 0 0 REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF MSMS UPN47_class_I_Rep_3 4 585.7930297851562 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.418 1 56.613 56.113 57.113 3.1948 0 0 0 0.53105 1 12049 12049 16.149 1.3108 1 + 29837 18687 18920 18931 34570 34570 -0.00631479736239271 PDYLGGHF 8 Unmodified _PDYLGGHF_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2;REV__ENSG00000218336|ENST00000511685|TENM3 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MSMS UPN46_class_I_Rep_3 1 453.2668762207031 2 453.211235 904.407917 NaN NaN NaN NaN NaN NaN NaN 74.352 1 74.352 73.852 74.852 0 0 0 0 0.40738 1 17250 17250 0.79363 0.10326 1 + 29838 19525;21278 18921 18932 34571 34571 -0.048110327164636146 PDYWIYET 8 Unmodified _PDYWIYET_ 0 0 0 REV__ENSG00000171451|ENST00000310045|DSEL REV__ENSG00000171451|ENST00000310045|DSEL MSMS UPN47_class_I_Rep_2 3 543.7438354492188 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 112.6 1 116.11 115.61 116.61 3.5171 0 0 0 0.40604 1 27398 27398 2.5775 0 1 + 29839 20406 18922 18933 34572 34572 -0.06873931438963155 PDYWIYET 8 Unmodified _PDYWIYET_ 0 0 0 REV__ENSG00000171451|ENST00000310045|DSEL REV__ENSG00000171451|ENST00000310045|DSEL MSMS UPN47_class_I_Rep_2 3 543.7073364257812 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 114.08 1 117.59 117.09 118.09 3.5109 0 0 0 0.40404 1 27768 27768 5.2307 0 1 + 29840 20406 18922 18933 34573 34573 -0.06873931438963155 PDYWIYET 8 Unmodified _PDYWIYET_ 0 0 0 REV__ENSG00000171451|ENST00000310045|DSEL REV__ENSG00000171451|ENST00000310045|DSEL MSMS UPN48_class_I_Rep_3 7 543.7433471679688 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 113.22 1 116.87 116.37 117.37 3.6568 0 0 0 0.40746 1 26914 26914 0.69038 0 1 + 29841 20406 18922 18933 34574 34574 -0.06873931438963155 PEAANQPDP 9 Unmodified _PEAANQPDP_ 0 0 0 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 MULTI-MSMS UPN47_class_I_Rep_1 2 469.71417236328125 2 469.714339 937.414125 -0.3965 -0.00018624 -0.31594 -0.0001484 -0.71244 -0.00033464 469.71421048379995 15.6 0.33034 19.097 18.965 19.296 3.4968 70 37 3 0 0 0 0.47493 1 841 841 3.2813 1.4371 1 59685 + 29842 20356 18923 18934 34575 34575 -0.05708559275615244 PEAANQPDP 9 Unmodified _PEAANQPDP_ 0 0 0 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 MULTI-MSMS UPN47_class_I_Rep_3 4 469.7137756347656 2 469.714339 937.414125 -0.87481 -0.00041091 0.069746 3.2761E-05 -0.80506 -0.00037815 469.7143539415993 15.687 0.44051 19.052 18.809 19.25 3.3659 79 47 2 0 0 0 0.47493 1 853 853 3.2813 1.4371 1 61156 + 29843 20356 18923 18934 34576 34576 -0.05708559275615244 PEALALHVD 9 Unmodified _PEALALHVD_ 0 0 0 REV__MER52A_dup99|chr2:23835971-23837653:-|3.0736942178539004|0.0601017878688715|5.68|151.0|53|3|anti-sense REV__MER52A_dup99|chr2:23835971-23837653:-|3.0736942178539004|0.0601017878688715|5.68|151.0|53|3|anti-sense MSMS UPN47_class_I_Rep_2 3 482.7590637207031 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 20.946 1 24.354 23.854 24.854 3.4074 0 0 0 0.38639 1 2262 2262 3.9444 0 1 + 29844 31430 18924 18935 34577 34577 0.019334810348595965 PEAPHIKLTS 10 Unmodified _PEAPHIKLTS_ 0 0 0 REV__nc|ENSG00000277880|A0A087X0K7|TRBV17 REV__nc|ENSG00000277880|A0A087X0K7|TRBV17 MULTI-MSMS UPN46_class_I_Rep_3 1 546.8264770507812 2 546.806031 1091.59751 -0.19734 -0.0001079 0.50425 0.00027573 0.30691 0.00016782 546.8062627544624 15.281 0.64322 15.281 15.043 15.687 0 144 74 3 0 0 0 0.56374 1 788 788 1.1933 0 1 77313 + 29845 32124 18925 18936 34578 34578 0.05537414506034111 PECYLSPPLD 10 Unmodified _PECYLSPPLD_ 0 0 0 REV__L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|271|2|anti-sense REV__L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|271|2|anti-sense MSMS UPN47_class_I_Rep_1 2 567.26123046875 2 567.262807 1132.51106 NaN NaN NaN NaN NaN NaN NaN 78.491 1 81.937 81.437 82.437 3.4456 0 0 0 0.53105 1 19516 19516 9.3831 1.473 1 + 29846 29697 18926 18937 34579 34579 -0.049893331108251004 PEDKLSTW 8 Unmodified _PEDKLSTW_ 0 0 0 MLT1K_dup16263|chr20:32065335-32065913:-|1.151864762557423|0.0288857603522881|5.32|149.0|18|3|sense MLT1K_dup16263|chr20:32065335-32065913:-|1.151864762557423|0.0288857603522881|5.32|149.0|18|3|sense MLT1K_dup16263|chr20:32065335-32065913:-|1.151864762557423|0.0288857603522881|5.32|149.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 488.2432861328125 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 26.461 1 29.808 29.308 30.308 3.3478 0 0 0 0.40604 1 3873 3873 2.5775 0 1 29847 16479 18927 18938 34580 34580 -0.017345117191098325 PEEETESWI 9 Unmodified _PEEETESWI_ 0 0 0 ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF ENSG00000144481|ENST00000324695|TRPM8 ENSG00000144481|ENST00000324695|TRPM8 MSMS UPN47_class_I_Rep_3 4 560.7283325195312 2 560.245669 1118.47678 NaN NaN NaN NaN NaN NaN NaN 42.605 1 45.844 45.344 46.344 3.2394 0 0 0 0.39518 1 8758 8758 1.8442 0.19162 1 29848 3356 18928 18939 34581 34581 -0.07771457998092046 PEEFFWVYF 9 Unmodified _PEEFFWVYF_ 0 0 0 REV__L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|53|1|anti-sense REV__L1MB3_dup13556|chr15:43041616-43042731:+|1.0501603337243102|0.0771642770443924|3.77|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_3 4 632.2896118164062 2 632.289682 1262.56481 NaN NaN NaN NaN NaN NaN NaN 32.984 1 36.271 35.771 36.771 3.2867 0 0 0 0.40038 1 5827 5827 0.6015 0 1 + 29849 25820 18929 18940 34582 34582 -0.05596792616802304 PEENGVAIF 9 Unmodified _PEENGVAIF_ 0 0 0 L1MA9_dup11104|chr10:110947561-110948828:+|1.8694188264633|0.0324417594894032|5.85|151.0|36|3|sense L1MA9_dup11104|chr10:110947561-110948828:+|1.8694188264633|0.0324417594894032|5.85|151.0|36|3|sense L1MA9_dup11104|chr10:110947561-110948828:+|1.8694188264633|0.0324417594894032|5.85|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 488.24298095703125 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 59.393 1 62.666 62.166 63.166 3.2731 0 0 0 0.3967 1 13821 13821 1.4819 0.68827 1 29850 10087 18930 18941 34583 34583 -0.017345117190984638 PEENRIFYL 9 Unmodified _PEENRIFYL_ 0 0 0 nc|ENSG00000141469|Q13336-2|SLC14A1;ENSG00000141469|ENST00000321925|SLC14A1;ENST00000591541.2_1_18:43319470-43329913:+|nuORF nc|ENSG00000141469|Q13336-2|SLC14A1 nc|ENSG00000141469|Q13336-2|SLC14A1 MULTI-MSMS UPN47_class_I_Rep_3 4 590.802978515625 2 590.803488 1179.59242 0.36468 0.00021546 -0.079079 -4.672E-05 0.28561 0.00016874 590.8034734592719 59.966 0.39059 63.131 62.9 63.29 3.1651 35 23 2 0 0 0 0.47197 1 14007 14007 3.5965 0 1 78512 29851 3221 18931 18942 34584 34584 0.009811106434199246 PEEYAEFQY 9 Unmodified _PEEYAEFQY_ 0 0 0 ENSG00000001629.10,ANKIB1,chr7,+,I15.1,92371608,92386508|38|8.54|3|intron;ENSG00000001629|ENST00000265742|ANKIB1 ENSG00000001629.10,ANKIB1,chr7,+,I15.1,92371608,92386508|38|8.54|3|intron ENSG00000001629.10,ANKIB1,chr7,+,I15.1,92371608,92386508|38|8.54|3|intron MSMS UPN47_class_I_Rep_1 2 588.2481689453125 2 588.248212 1174.48187 NaN NaN NaN NaN NaN NaN NaN 79.627 1 83.092 82.592 83.592 3.465 0 0 0 0.28335 1 19846 19846 11.64 0 1 29852 669 18932 18943 34585 34585 -0.09839154135465833 PEEYAEFQY 9 Unmodified _PEEYAEFQY_ 0 0 0 ENSG00000001629.10,ANKIB1,chr7,+,I15.1,92371608,92386508|38|8.54|3|intron;ENSG00000001629|ENST00000265742|ANKIB1 ENSG00000001629.10,ANKIB1,chr7,+,I15.1,92371608,92386508|38|8.54|3|intron ENSG00000001629.10,ANKIB1,chr7,+,I15.1,92371608,92386508|38|8.54|3|intron MSMS UPN47_class_I_Rep_3 4 588.2483520507812 2 588.248212 1174.48187 NaN NaN NaN NaN NaN NaN NaN 79.829 1 83.138 82.638 83.638 3.309 0 0 0 0.2088 1 19973 19973 15.847 0 1 29853 669 18932 18943 34586 34586 -0.09839154135465833 PEFFDHFWS 9 Unmodified _PEFFDHFWS_ 0 0 0 KCNH2|p.S849F|1|0.07|ENSG00000055118|chr7:150948902-150948902|G/A|missense_variant KCNH2|p.S849F|1|0.07|ENSG00000055118|chr7:150948902-150948902|G/A|missense_variant KCNH2|p.S849F|1|0.07|ENSG00000055118|chr7:150948902-150948902|G/A|missense_variant MSMS UPN48_class_I_Rep_1 5 404.57806396484375 3 404.510063 1210.50836 NaN NaN NaN NaN NaN NaN NaN 40.537 1 44.042 43.542 44.542 3.5048 0 0 0 0.39887 1 7287 7287 0.96228 0 1 29854 8471 18933 18944 34587 34587 -0.08847420453457744 PEFMLPVHF 9 Oxidation (M) _PEFM(Oxidation (M))LPVHF_ PEFM(1)LPVHF PEFM(51)LPVHF 0 0 1 nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF nc|ENSG00000100504|P06737-2|PYGL nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS UPN46_class_I_Rep_3 1 566.7780151367188 2 566.778428 1131.5423 0.44572 0.00025262 -0.39656 -0.00022476 0.049158 2.7862E-05 566.7781607195855 80.627 0.16158 80.627 80.472 80.633 0 29 18 2 0 0 0 0.045397 1 19003 19003 50.855 8.7605 1 161020 29855 1510 18934 18945 34588 34588 45 -0.01820715286066843 PEGAEFHFVTF 11 Unmodified _PEGAEFHFVTF_ 0 0 0 ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF ENST00000314393.5_1_8:123793760-123875761:+|nuORF MSMS UPN48_class_I_Rep_2 6 640.8011474609375 2 640.800946 1279.58734 NaN NaN NaN NaN NaN NaN NaN 43.743 1 47.504 47.004 48.004 3.7617 0 0 0 0.38417 1 8257 8257 1.1933 0.59184 1 29856 6124 18935 18946 34589 34589 -0.04127193219210312 PEGPEPSFFGG 11 Unmodified _PEGPEPSFFGG_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS UPN48_class_I_Rep_2 6 560.7510986328125 2 560.750921 1119.48729 0.48874 0.00027406 0.26259 0.00014725 0.75133 0.00042131 560.7509675134752 77.461 0.61578 81.073 80.779 81.394 3.6116 99 58 2 0 0 0 0.4356 1 18307 18307 9.3831 1.473 1 252900 + 29857 20224 18936 18947 34590 34590 -0.06767430553009035 PEHSGLIIVI 10 Unmodified _PEHSGLIIVI_ 0 0 0 REV__Tigger1_dup7959|chr10:21950120-21950999:+|1.7542418894768046|0.0060150887635554|8.19|151.0|13|2|sense REV__Tigger1_dup7959|chr10:21950120-21950999:+|1.7542418894768046|0.0060150887635554|8.19|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 539.7893676757812 2 539.318774 1076.623 NaN NaN NaN NaN NaN NaN NaN 55.571 1 55.571 55.071 56.071 0 0 0 0 0.53105 1 12082 12082 1.6526 0.96225 1 + 29858 32532 18937 18948 34591 34591 0.08774889028472899 PEHTHLARSCS 11 Unmodified _PEHTHLARSCS_ 0 0 0 ENST00000524249.5_1_2:46768823-46769105:-|nuORF ENST00000524249.5_1_2:46768823-46769105:-|nuORF ENST00000524249.5_1_2:46768823-46769105:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 619.2891235351562 2 619.290753 1236.56695 0.44484 0.00027549 -1.4565 -0.00090203 -1.0117 -0.00062654 619.2882934725876 61.299 1.7177 64.68 64.305 66.022 3.3815 418 122 6 0 0 0 0.61292 1 14600 14600 4.897 0.95262 1 2777200 29859 7249 18938 18949 34592 34592 -0.04186687150649959 PEHVRESEF 9 Unmodified _PEHVRESEF_ 0 0 0 REV__ENSG00000147100|ENST00000587091|SLC16A2 REV__ENSG00000147100|ENST00000587091|SLC16A2 MULTI-SECPEP UPN48_class_I_Rep_3 7 564.7354736328125 2 565.26727 1128.51999 0.30641 0.00017321 0.59715 0.00033755 0.90356 0.00051075 565.267561135356 54.731 0.48516 58.3 58.161 58.646 3.5694 35 30 2 0 0 0 0.12034 1 11566 11566 7.2892 0.56607 1 83206 + 29860 19558 18939 18950 34593 34593 -0.03913223430140533 PEIDITQFRCS 11 Unmodified _PEIDITQFRCS_ 0 0 0 REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF MSMS UPN46_class_I_Rep_3 1 436.8783874511719 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 13.011 1 13.011 12.511 13.511 0 0 0 0 0.38417 1 272 272 0.45452 0.24766 1 + 29861 22285 18940 18951 34594 34594 -0.023517828964486398 PEIHFEPYF 9 Unmodified _PEIHFEPYF_ 0 0 0 REV__L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|22|1|sense REV__L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.7298583984375 2 589.779482 1177.54441 0.42901 0.00025302 -0.015131 -8.924E-06 0.41388 0.0002441 590.2815168887951 72.317 0.070114 75.614 75.552 75.622 3.2971 5 4 2 0 0 0 0.48846 1 17715 17715 1.8442 0 1 44885 + 29862 30018 18941 18952 34595 34595 -0.03725963276610855 PEIHFEPYF 9 Unmodified _PEIHFEPYF_ 0 0 0 REV__L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|22|1|sense REV__L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|22|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 589.779482 1177.54441 0.42901 0.00025302 -0.015131 -8.924E-06 0.41388 0.0002441 590.2815168887951 72.317 0.070114 75.614 75.552 75.622 3.2971 0 0 NaN 1.8442 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 44885 + 29863 30018 18941 18952 -0.03725963276610855 PEKAPGNAVPL 11 Unmodified _PEKAPGNAVPL_ 0 0 0 REV__ENSG00000157680|ENST00000614521|DGKI REV__ENSG00000157680|ENST00000614521|DGKI MULTI-MSMS UPN46_class_I_Rep_3 1 546.8067016601562 2 546.806031 1091.59751 -0.19734 -0.0001079 0.50425 0.00027573 0.30691 0.00016782 546.8062627544624 15.281 0.64322 15.281 15.043 15.687 0 144 74 3 0 0 0 0.59712 1 889 889 5.2969 0 1 77313 + 29864 19827 18942 18953 34596 34596 0.05537414506034111 PEKFYLAP 8 Unmodified _PEKFYLAP_ 0 0 0 REV__ENSG00000165972|ENST00000344280|CCDC38 REV__ENSG00000165972|ENST00000344280|CCDC38 MSMS UPN47_class_I_Rep_2 3 482.7577209472656 2 482.760561 963.506569 NaN NaN NaN NaN NaN NaN NaN 20.982 1 24.389 23.889 24.889 3.4074 0 0 0 0.39996 1 2273 2273 7.9102 0 1 + 29865 20146 18943 18954 34597 34597 0.023355705285553086 PEKGHTFVYW 10 Unmodified _PEKGHTFVYW_ 0 0 0 nc|ENSG00000211749|A0A0A0MS06|TRBV23-1 nc|ENSG00000211749|A0A0A0MS06|TRBV23-1 nc|ENSG00000211749|A0A0A0MS06|TRBV23-1 MSMS UPN48_class_I_Rep_2 6 632.30810546875 2 632.31148 1262.60841 NaN NaN NaN NaN NaN NaN NaN 67.457 1 70.953 70.453 71.453 3.4964 0 0 0 0.53105 1 15492 15492 3.2813 1.6287 1 29866 16814 18944 18955 34598 34598 -0.012391831196737257 PEKKTARK 8 Unmodified _PEKKTARK_ 0 0 0 REV__ENST00000461993.1_1_1:40535258-40537202:+|nuORF REV__ENST00000461993.1_1_1:40535258-40537202:+|nuORF MSMS UPN47_class_I_Rep_2 3 479.2955017089844 2 479.295633 956.576714 NaN NaN NaN NaN NaN NaN NaN 17.317 1 20.704 20.204 21.204 3.387 0 0 0 0.40738 1 1271 1271 0.79363 0 1 + 29867 18968 18945 18956 34599 34599 0.0966886891702643 PEKLKSDL 8 Unmodified _PEKLKSDL_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MULTI-MSMS UPN46_class_I_Rep_3 1 465.2703857421875 2 465.26875 928.522947 0.22754 0.00010587 -0.14231 -6.6213E-05 0.085229 3.9654E-05 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.82752 1 25410 25410 4.3292 1.7518 1 4396600 + 29868 18653 18946 18957 34600 34600 0.055826516946467564 PEKNLIAISSH 11 Unmodified _PEKNLIAISSH_ 0 0 0 L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|21|1|anti-sense L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|21|1|anti-sense L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 604.8352661132812 2 604.83532 1207.65609 0.071403 4.3187E-05 0.029343 1.7747E-05 0.10075 6.0935E-05 604.8353104511474 43.217 0.32787 46.904 46.734 47.062 3.6875 34 21 2 0 0 0 0.66059 1 8891 8891 2.2828 0.63015 1 54989 29869 10752 18947 18958 34601 34601 0.060564710805238064 PEKNLIAISSH 11 Unmodified _PEKNLIAISSH_ 0 0 0 L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|21|1|anti-sense L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|21|1|anti-sense L1MB7_dup1794|chr2:10321453-10321993:-|1.0010041562544485|0.0269674757967439|5.21|149.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 604.8353271484375 2 604.83532 1207.65609 0.13995 8.4648E-05 0.33504 0.00020264 0.47499 0.00028729 605.3369741810337 43.536 0.3928 46.894 46.76 47.152 3.358 29 22 2 0 0 0 0.66059 1 8988 8988 2.2828 0.63015 1 65158 29870 10752 18947 18958 34602 34602 0.060564710805238064 PEKSKKKYI 9 Unmodified _PEKSKKKYI_ 0 0 0 REV__L1PA4_dup6354|chr9:5153484-5155487:+|4.872810584194928|0.0320386790310851|7.25|151.0|29|2|sense REV__L1PA4_dup6354|chr9:5153484-5155487:+|4.872810584194928|0.0320386790310851|7.25|151.0|29|2|sense MSMS UPN47_class_I_Rep_1 2 560.8417358398438 2 560.839874 1119.66519 NaN NaN NaN NaN NaN NaN NaN 95.559 1 99.324 98.824 99.824 3.7648 0 0 0 0.39518 1 23721 23721 1.8442 1.1539 1 + 29871 29663 18948 18959 34603 34603 0.11014864436833705 PEKSTLLCQL 10 Unmodified _PEKSTLLCQL_ 0 0 0 REV__L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|54|3|sense REV__L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|54|3|sense MSMS UPN48_class_I_Rep_2 6 566.3089599609375 2 566.307549 1130.60055 NaN NaN NaN NaN NaN NaN NaN 99.833 1 103.59 103.09 104.09 3.7575 0 0 0 0.53105 1 23715 23715 1.3295 0 1 + 29872 29261 18949 18960 34604 34604 0.04046921568556172 PELASSHLDFF 11 Unmodified _PELASSHLDFF_ 0 0 0 L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|36|1|anti-sense L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|36|1|anti-sense L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_3 7 631.8055419921875 2 631.806228 1261.5979 NaN NaN NaN NaN NaN NaN NaN 67.135 1 70.643 70.143 71.143 3.5077 0 0 0 0.35398 1 15303 15303 8.7454 3.4485 1 29873 10314 18950 18961 34605 34605 -0.022432105647794742 PELEGMIVML 10 Unmodified _PELEGMIVML_ 0 0 0 REV__nc|ENSG00000001626|P13569-3|CFTR REV__nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN47_class_I_Rep_3 4 566.2926025390625 2 566.293053 1130.57155 0.53917 0.00030533 -0.41886 -0.00023719 0.12031 6.813E-05 566.2928427175877 51.133 0.60199 54.35 53.994 54.596 3.2163 43 27 2 0 0 0 0.56033 1 11343 11343 3.5965 0.31518 1 63787 + 29874 17512 18951 18962 34606 34606 0.011490609479096747 PELFGCLSIK 10 Unmodified _PELFGCLSIK_ 0 0 0 REV__ENST00000411543.6_1_19:56188433-56188580:+|nuORF REV__ENST00000411543.6_1_19:56188433-56188580:+|nuORF MSMS UPN47_class_I_Rep_3 4 553.8138427734375 2 553.79936 1105.58417 NaN NaN NaN NaN NaN NaN NaN 38.851 1 42.089 41.589 42.589 3.238 0 0 0 0.53105 1 7610 7610 2.9952 0.26005 1 + 29875 22191 18952 18963 34607 34607 0.03559840402431291 PELIRDLIRC 10 Unmodified _PELIRDLIRC_ 0 0 0 REV__L1MC3_dup11028|chr15:65783125-65784553:+|6.773683610189507|0.0331232109083987|7.68|151.0|56|3|sense REV__L1MC3_dup11028|chr15:65783125-65784553:+|6.773683610189507|0.0331232109083987|7.68|151.0|56|3|sense MSMS UPN47_class_I_Rep_2 3 614.3487548828125 2 614.34754 1226.68053 NaN NaN NaN NaN NaN NaN NaN 67.362 1 70.625 70.125 71.125 3.2636 0 0 0 0.53105 1 16241 16241 1.3295 0 1 + 29876 26707 18953 18964 34608 34608 0.07625407962405006 PELLPLLY 8 Unmodified _PELLPLLY_ 0 0 0 REV__MLT1H_dup7916|chr15:55344106-55344532:-|1.0985374731205355|0.2222338905244115|2.31|151.0|2|1|sense REV__MLT1H_dup7916|chr15:55344106-55344532:-|1.0985374731205355|0.2222338905244115|2.31|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 479.28656005859375 2 479.286411 956.55827 NaN NaN NaN NaN NaN NaN NaN 13.568 1 17.025 16.525 17.525 3.457 0 0 0 0.40738 1 362 362 0.79363 0 1 + 29877 31749 18954 18965 34609 34609 0.07825314222486668 PELLSGHLLH 10 Unmodified _PELLSGHLLH_ 0 0 0 L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|119|3|anti-sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|119|3|anti-sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|119|3|anti-sense MSMS UPN48_class_I_Rep_1 5 558.3125 2 558.314023 1114.61349 NaN NaN NaN NaN NaN NaN NaN 29.029 1 32.579 32.079 33.079 3.5499 0 0 0 0.53105 1 3975 3975 1.6526 0.96225 1 29878 11599 18955 18966 34610 34610 0.06077120742952502 PELLSGHLLH 10 Unmodified _PELLSGHLLH_ 0 0 0 L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|119|3|anti-sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|119|3|anti-sense L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|119|3|anti-sense MSMS UPN48_class_I_Rep_2 6 558.3186645507812 2 558.314023 1114.61349 NaN NaN NaN NaN NaN NaN NaN 45.325 1 49.083 48.583 49.583 3.7579 0 0 0 0.53105 1 8736 8736 1.4819 0 1 29879 11599 18955 18966 34611 34611 0.06077120742952502 PELRKSLL 8 Unmodified _PELRKSLL_ 0 0 0 nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G MSMS UPN48_class_I_Rep_1 5 478.3027038574219 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 66.635 1 70.087 69.587 70.587 3.4516 0 0 0 0.40404 1 15253 15253 5.2307 0 1 29880 715 18956 18967 34612 34612 0.10710637202578255 PELRKSLL 8 Unmodified _PELRKSLL_ 0 0 0 nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G MSMS UPN48_class_I_Rep_2 6 478.3018493652344 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 66.461 1 69.948 69.448 70.448 3.4866 0 0 0 0.39819 1 15185 15185 8.5933 0 1 29881 715 18956 18967 34613 34613 0.10710637202578255 PELRKSLL 8 Unmodified _PELRKSLL_ 0 0 0 nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G MSMS UPN48_class_I_Rep_2 6 478.30255126953125 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 66.534 1 70.021 69.521 70.521 3.4866 0 0 0 0.39819 1 15208 15208 8.5933 0 1 29882 715 18956 18967 34614 34614 0.10710637202578255 PELSIWDYF 9 Unmodified _PELSIWDYF_ 0 0 0 nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS UPN48_class_I_Rep_2 6 585.279296875 2 585.279315 1168.54408 0.47535 0.00027821 0.096948 5.6742E-05 0.5723 0.00033496 585.2791087855105 76.515 0.51665 80.125 79.857 80.374 3.6102 82 57 2 0 0 0 0.40174 1 18064 18064 7.9102 0 1 217570 29883 4594 18957 18968 34615 34615 -0.03345382996462831 PELSIWDYF 9 Unmodified _PELSIWDYF_ 0 0 0 nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 585.279315 1168.54408 0.44092 0.00025806 0.27086 0.00015853 0.71179 0.00041659 585.2790085755199 76.485 0.053833 79.995 79.984 80.038 3.5102 -0.025747 0.00052146 NaN 7.9102 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 97946 29884 4594 18957 18968 -0.03345382996462831 PELVWLKV 8 Unmodified _PELVWLKV_ 0 0 0 REV__L1MA5_dup655|chr2:207587422-207588095:+|1.9180183213124509|0.1399656161850255|3.78|151.0|6|1|sense REV__L1MA5_dup655|chr2:207587422-207588095:+|1.9180183213124509|0.1399656161850255|3.78|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 492.3016357421875 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 112.68 1 116.25 115.75 116.75 3.572 0 0 0 0.40746 1 27783 27783 0.69038 0 1 + 29885 25405 18958 18969 34616 34616 0.09316422833660454 PELYSVPLE 9 Unmodified _PELYSVPLE_ 0 0 0 REV__ENSG00000156398|ENST00000369893|SFXN2 REV__ENSG00000156398|ENST00000369893|SFXN2 MULTI-SECPEP UPN47_class_I_Rep_2 3 523.3038330078125 2 523.773865 1045.53318 0.099047 5.1878E-05 0.33178 0.00017378 0.43083 0.00022566 523.7738887298786 79.617 0.55717 82.972 82.793 83.351 3.3554 91 62 2 0 0 0 0.11021 1 19833 19833 14.838 0 1 189400 + 29886 19794 18959 18970 34617 34617 0.012232146292262769 PEPAKSAPAPK 11 Unmodified _PEPAKSAPAPK_ 0 0 0 ENSG00000180596|ENST00000396984|H2BC4;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11 ENSG00000180596|ENST00000396984|H2BC4 ENSG00000180596|ENST00000396984|H2BC4 MULTI-MSMS UPN46_class_I_Rep_3 1 546.8049926757812 2 546.806031 1091.59751 -0.19734 -0.0001079 0.50425 0.00027573 0.30691 0.00016782 546.8062627544624 15.281 0.64322 15.281 15.043 15.687 0 144 74 3 0 0 0 0.42924 4 902 793;825;855;902 9.544 3.8121 1 77313 29887 4894 18960 18971 34618;34619;34620;34621 34621 0.05537414506011373 PEPEGQLEEP 10 Unmodified _PEPEGQLEEP_ 0 0 0 nc|ENSG00000215187|A8MTA8-2|CIMIP2B;ENSG00000215187|ENST00000399742|FAM166B;ENST00000492890.5_1_9:35561867-35563864:-|nuORF nc|ENSG00000215187|A8MTA8-2|CIMIP2B nc|ENSG00000215187|A8MTA8-2|CIMIP2B MULTI-MSMS UPN47_class_I_Rep_1 2 562.760009765625 2 562.758943 1123.50333 -0.059853 -3.3683E-05 0.4545 0.00025577 0.39465 0.00022209 562.759007040983 30.459 0.61835 34.204 33.862 34.481 3.7449 82 47 3 0 0 0 0.56189 1 5010 5010 2.4985 0.43874 1 121870 29888 5634 18961 18972 34622 34622 -0.05347769106742817 PEPEGQLEEP 10 Unmodified _PEPEGQLEEP_ 0 0 0 nc|ENSG00000215187|A8MTA8-2|CIMIP2B;ENSG00000215187|ENST00000399742|FAM166B;ENST00000492890.5_1_9:35561867-35563864:-|nuORF nc|ENSG00000215187|A8MTA8-2|CIMIP2B nc|ENSG00000215187|A8MTA8-2|CIMIP2B MULTI-MSMS UPN47_class_I_Rep_3 4 562.75830078125 2 562.758943 1123.50333 -0.17585 -9.8962E-05 0.41411 0.00023305 0.23826 0.00013408 562.759113677116 30.716 0.58743 34.028 33.725 34.313 3.3116 84 47 2 0 0 0 0.55949 1 5110 5110 4.1895 1.1943 1 142640 29889 5634 18961 18972 34623 34623 -0.05347769106742817 PEPGQRHPPV 10 Unmodified _PEPGQRHPPV_ 0 0 0 ENST00000253496.3_1_5:176831288-176831529:-|nuORF ENST00000253496.3_1_5:176831288-176831529:-|nuORF ENST00000253496.3_1_5:176831288-176831529:-|nuORF MSMS UPN48_class_I_Rep_1 5 557.2924194335938 2 557.293622 1112.57269 NaN NaN NaN NaN NaN NaN NaN 39.37 1 42.875 42.375 43.375 3.5048 0 0 0 0.53105 1 6943 6943 2.9952 1.151 1 29890 5921 18962 18973 34624 34624 0.020907794233153254 PEQEALFYS 9 Unmodified _PEQEALFYS_ 0 0 0 REV__nc|ENSG00000100490|Q00532-2|CDKL1 REV__nc|ENSG00000100490|Q00532-2|CDKL1 MSMS UPN48_class_I_Rep_2 6 541.7781372070312 2 542.253297 1082.49204 NaN NaN NaN NaN NaN NaN NaN 37.435 1 41.137 40.637 41.637 3.7021 0 0 0 0.39598 1 6407 6407 1.6526 0 1 + 29891 31950 18963 18974 34625 34625 -0.04590546410236129 PEQKPCLKPT 10 Unmodified _PEQKPCLKPT_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 570.2748413085938 2 570.807716 1139.60088 0.47232 0.0002696 -0.6704 -0.00038267 -0.19809 -0.00011307 570.8073676915972 33.936 0.22334 37.596 37.469 37.692 3.6607 24 21 2 0 0 0 0.84575 1 5407 5407 1.4819 1.2129 1 53957 29892 2291 18964 18975 34626 34626 0.03666341288385411 PEQKPCLKPT 10 Unmodified _PEQKPCLKPT_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 570.807716 1139.60088 0.45129 0.0002576 -0.66112 -0.00037737 -0.20983 -0.00011977 570.807395159593 34.142 0.18296 37.662 37.601 37.784 3.5201 -0.051622 0.00021404 NaN 1.4819 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 63544 29893 2291 18964 18975 0.03666341288385411 PEQKPCLKPT 10 Unmodified _PEQKPCLKPT_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 570.807716 1139.60088 0.3673 0.00020966 -1.4799 -0.00084476 -1.1126 -0.0006351 570.8071074248538 34.202 0.024147 37.882 37.864 37.888 3.6797 0.1685 -0.00072073 NaN 1.4819 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 30168 29894 2291 18964 18975 0.03666341288385411 PEQPKCVVSQ 10 Unmodified _PEQPKCVVSQ_ 0 0 0 REV__ENSG00000126016|ENST00000371959|AMOT REV__ENSG00000126016|ENST00000371959|AMOT MSMS UPN47_class_I_Rep_2 3 557.7918090820312 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 52.947 1 56.273 55.773 56.773 3.3266 0 0 0 0.53105 1 11849 11849 2.9952 0 1 + 29895 18855 18965 18976 34627 34627 -0.0033882212535445433 PERKLKKKYW 10 Unmodified _PERKLKKKYW_ 0 0 0 L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|78|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|78|3|sense L1M1_dup7757|chr13:39733531-39736410:-|1.1384842903249188|0.1956596879908475|2.54|150.0|78|3|sense MSMS UPN46_class_I_Rep_3 1 459.2797546386719 3 459.278473 1374.81359 NaN NaN NaN NaN NaN NaN NaN 91.349 1 91.349 90.849 91.849 0 0 0 0 0.53105 1 22062 22062 0.15932 0 1 29896 8621 18966 18977 34628 34628 0.1411759541056199 PERLVRHW 8 Unmodified _PERLVRHW_ 0 0 0 REV__ENST00000569840.6_1_17:74928850-74934194:+|nuORF REV__ENST00000569840.6_1_17:74928850-74934194:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 547.3072509765625 2 546.8067 1091.59885 -0.19734 -0.0001079 -0.71867 -0.00039297 -0.91601 -0.00050088 546.8062627544624 15.281 0.64322 15.281 15.043 15.687 0 144 74 3 0 0 0 0.82752 1 918 918 5.2307 0 1 77313 + 29897 23083 18967 18978 34629 34629 0.056710933854674295 PERVIILL 8 Unmodified _PERVIILL_ 0 0 0 REV__ENSG00000249853|ENST00000312719|HS3ST5 REV__ENSG00000249853|ENST00000312719|HS3ST5 MSMS UPN46_class_I_Rep_3 1 476.8148498535156 2 476.813128 951.611703 NaN NaN NaN NaN NaN NaN NaN 20.794 1 20.794 20.294 21.294 0 0 0 0 0.40746 1 2222 2222 0.69038 0 1 + 29898 21353 18968 18979 34630 34630 0.1339611172501236 PESKLCRLY 9 Unmodified _PESKLCRLY_ 0 0 0 REV__HAL1M8_dup575|chr4:151108415-151108724:-|1.2947207889303445|0.0679049778943025|4.25|151.0|8|2|sense REV__HAL1M8_dup575|chr4:151108415-151108724:-|1.2947207889303445|0.0679049778943025|4.25|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 554.796875 2 554.794609 1107.57467 NaN NaN NaN NaN NaN NaN NaN 45.553 1 48.797 48.297 49.297 3.2441 0 0 0 0.32573 1 9663 9663 9.3831 0 1 + 29899 23477 18969 18980 34631 34631 0.025180721169363096 PESPLLLM 8 Unmodified _PESPLLLM_ 0 0 0 MER31A_dup706|chr8:127928026-127928470:+|1.0979571698923407|0.031923139211177|5.1|151.0|17|3|sense MER31A_dup706|chr8:127928026-127928470:+|1.0979571698923407|0.031923139211177|5.1|151.0|17|3|sense MER31A_dup706|chr8:127928026-127928470:+|1.0979571698923407|0.031923139211177|5.1|151.0|17|3|sense MSMS UPN46_class_I_Rep_3 1 450.25006103515625 2 450.248972 898.48339 NaN NaN NaN NaN NaN NaN NaN 64.13 1 64.13 63.63 64.63 0 0 0 0 0.40738 1 14416 14416 0.79363 0 1 29900 15914 18970 18981 34632 34632 0.030088084196108866 PESTLHNQQL 10 Unmodified _PESTLHNQQL_ 0 0 0 REV__L1MEd_dup16596|chr12:132072329-132073005:-|1.635997777365084|0.3825905262404654|2.1|151.0|11|2|sense REV__L1MEd_dup16596|chr12:132072329-132073005:-|1.635997777365084|0.3825905262404654|2.1|151.0|11|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 583.7933349609375 2 583.793652 1165.57275 0.11508 6.7182E-05 -0.070828 -4.1349E-05 0.04425 2.5833E-05 583.7935883905401 23.276 0.96188 23.276 22.879 23.84 0 139 94 2 0 0 0 0.56354 1 2925 2925 1.3295 1.3295 1 99708 + 29901 28549 18971 18982 34633 34633 -0.003412653673422028 PESWKKRK 8 Unmodified _PESWKKRK_ 0 0 0 HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|18|2|sense HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|18|2|sense HERVFH19-int_dup55|chrX:72228335-72229908:+|1.5973470578528437|0.0524200626084761|4.93|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.3104248046875 2 529.808908 1057.60326 -0.17276 -9.1528E-05 1.4633 0.00077525 1.2905 0.00068372 530.311071907477 13.16 0.083049 16.548 16.482 16.565 3.388 8 5 2 0 0 0 0.82752 1 261 261 0.79363 0 1 19096 29902 8126 18972 18983 34634 34634 0.07676557808372309 PETFRRPQI 9 Unmodified _PETFRRPQI_ 0 0 0 nc|ENSG00000084070|Q8WU79-3|SMAP2;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2 nc|ENSG00000084070|Q8WU79-3|SMAP2 nc|ENSG00000084070|Q8WU79-3|SMAP2 MSMS UPN48_class_I_Rep_2 6 572.3175048828125 2 572.317097 1142.61964 NaN NaN NaN NaN NaN NaN NaN 64.563 1 68.038 67.538 68.538 3.4743 0 0 0 0.39518 1 14606 14606 1.8442 0.36234 1 29903 1249 18973 18984 34635 34635 0.054036389744851476 PEVRQQLK 8 Unmodified _PEVRQQLK_ 0 0 0 REV__ENSG00000188994.13,ZNF292,chr6,+,I10.1,87223937,87233324|32|8.3|1|intron REV__ENSG00000188994.13,ZNF292,chr6,+,I10.1,87223937,87233324|32|8.3|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 499.29364013671875 2 499.293091 996.571629 0.18927 9.4499E-05 0.14567 7.273E-05 0.33493 0.00016723 499.29309218622285 91.056 0.11246 94.682 94.585 94.698 3.626 17 12 2 0 0 0 0.82752 1 21879 21879 4.756 0 1 129660 + 29904 20991 18974 18985 34636 34636 0.07320565054430972 PEVRQQLK 8 Unmodified _PEVRQQLK_ 0 0 0 REV__ENSG00000188994.13,ZNF292,chr6,+,I10.1,87223937,87233324|32|8.3|1|intron REV__ENSG00000188994.13,ZNF292,chr6,+,I10.1,87223937,87233324|32|8.3|1|intron MULTI-MATCH UPN48_class_I_Rep_2 6 2 499.293091 996.571629 0.28801 0.0001438 0.049268 2.4599E-05 0.33728 0.0001684 499.2931028401223 90.7 0.32222 94.456 94.216 94.539 3.7554 -0.11338 -2.0944E-05 NaN 4.756 62 46 2 NaN NaN NaN NaN 0 NaN NaN 0 84034 + 29905 20991 18974 18985 0.07320565054430972 PEVSRGPA 8 Unmodified _PEVSRGPA_ 0 0 0 ENST00000591433.5_1_19:1358605-1371443:+|nuORF ENST00000591433.5_1_19:1358605-1371443:+|nuORF ENST00000591433.5_1_19:1358605-1371443:+|nuORF MSMS UPN48_class_I_Rep_2 6 406.718505859375 2 406.716685 811.418816 NaN NaN NaN NaN NaN NaN NaN 62.748 1 66.222 65.722 66.722 3.4738 0 0 0 0.38444 1 14050 14050 13.906 0 1 29906 7623 18975 18986 34637 34637 0.0055636965781786785 PEVTSHLLS 9 Unmodified _PEVTSHLLS_ 0 0 0 REV__L1MD2_dup9046|chr15:100976917-100978539:+|2.273971589242604|0.0144816480659871|7.29|151.0|69|2|anti-sense REV__L1MD2_dup9046|chr15:100976917-100978539:+|2.273971589242604|0.0144816480659871|7.29|151.0|69|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 491.7914733886719 2 491.763832 981.513111 0.29896 0.00014702 -1.0806 -0.0005314 -0.78163 -0.00038438 491.7627739595265 89.846 0.051079 89.846 89.805 89.856 0 6 4 2 0 0 0 0.12462 1 21637 21637 1.8442 0 1 48160 + 29907 27446 18976 18987 34638 34638 0.02161463689287757 PEVTSHLLS 9 Unmodified _PEVTSHLLS_ 0 0 0 REV__L1MD2_dup9046|chr15:100976917-100978539:+|2.273971589242604|0.0144816480659871|7.29|151.0|69|2|anti-sense REV__L1MD2_dup9046|chr15:100976917-100978539:+|2.273971589242604|0.0144816480659871|7.29|151.0|69|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 491.763832 981.513111 0.26554 0.00013058 -0.38319 -0.00018844 -0.11765 -5.7855E-05 491.76407114432783 86.101 0.028503 89.871 89.854 89.883 3.7701 0.012549 0.00041163 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 39688 + 29908 27446 18976 18987 0.02161463689287757 PEWFDEEW 8 Unmodified _PEWFDEEW_ 0 0 0 REV__ENSG00000169676|ENST00000304374|DRD5 REV__ENSG00000169676|ENST00000304374|DRD5 MSMS UPN47_class_I_Rep_3 4 569.2293701171875 2 569.229822 1136.44509 NaN NaN NaN NaN NaN NaN NaN 24.163 1 27.513 27.013 28.013 3.3509 0 0 0 0.40746 1 3197 3197 0.69038 0 1 + 29909 20321 18977 18988 34639 34639 -0.11767405961381883 PEWFFQFHF 9 Unmodified _PEWFFQFHF_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|93|2|anti-sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|93|2|anti-sense MSMS UPN47_class_I_Rep_1 2 642.795166015625 2 642.795466 1283.57638 NaN NaN NaN NaN NaN NaN NaN 49.555 1 53.214 52.714 53.714 3.6592 0 0 0 0.39428 1 10789 10789 2.0598 0.21551 1 + 29910 25504 18978 18989 34640 34640 -0.054065508028088516 PEWRFFVYY 9 Unmodified _PEWRFFVYY_ 0 0 0 REV__L1P3b_dup57|chr11:73498118-73499999:+|1.358191784949026|0.0167494268641268|6.34|151.0|56|1|anti-sense REV__L1P3b_dup57|chr11:73498118-73499999:+|1.358191784949026|0.0167494268641268|6.34|151.0|56|1|anti-sense MSMS UPN47_class_I_Rep_3 4 436.2140808105469 3 436.213358 1305.61824 NaN NaN NaN NaN NaN NaN NaN 18.736 1 22.09 21.59 22.59 3.3545 0 0 0 0.38536 1 1617 1617 4.1895 0 1 + 29911 28904 18979 18990 34641 34641 -0.02233995114283971 PEYDLEEDDQ 10 Unmodified _PEYDLEEDDQ_ 0 0 0 ENSG00000115942.9,ORC2,chr2,-,I9.1,200937967,200941247|28|6.29|4|intron;ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942.9,ORC2,chr2,-,I9.1,200937967,200941247|28|6.29|4|intron ENSG00000115942.9,ORC2,chr2,-,I9.1,200937967,200941247|28|6.29|4|intron MSMS UPN48_class_I_Rep_2 6 626.74609375 2 626.74623 1251.47791 NaN NaN NaN NaN NaN NaN NaN 34.138 1 37.798 37.298 38.298 3.6607 0 0 0 0.53105 1 5470 5470 1.6526 1.0511 1 29912 2152 18980 18991 34642 34642 -0.13777288419828437 PEYGEVIQL 9 Unmodified _PEYGEVIQL_ 0 0 0 ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B ENST00000462917.1_1_17:39846204-39847075:+|nuORF ENST00000462917.1_1_17:39846204-39847075:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 524.271484375 2 524.27149 1046.52843 0.40462 0.00021213 -0.55205 -0.00028943 -0.14744 -7.7296E-05 524.2710466787028 67.124 0.61105 70.62 70.31 70.921 3.4964 60 39 2 0 0 0 0.13244 1 15388 15388 27.629 4.8925 1 192200 29913 6872 18981 18992 34643 34643 0.007023304865015234 PEYLGNPPFY 10 Unmodified _PEYLGNPPFY_ 0 0 0 nc|ENSG00000164076|Q8NCB2-2|CAMKV nc|ENSG00000164076|Q8NCB2-2|CAMKV nc|ENSG00000164076|Q8NCB2-2|CAMKV MSMS UPN47_class_I_Rep_3 4 598.7848510742188 2 598.784764 1195.55498 NaN NaN NaN NaN NaN NaN NaN 64.172 1 67.346 66.846 67.846 3.1741 0 0 0 0.53105 1 15329 15329 1.6526 0 1 29914 16736 18982 18993 34644 34644 -0.03497980622182695 PFAKPLPTF 9 Unmodified _PFAKPLPTF_ 0 0 0 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|7|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|8|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|4|intron;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron MULTI-SECPEP UPN48_class_I_Rep_1 5 509.7715148925781 2 509.292028 1016.5695 0.32369 0.00016485 -0.37257 -0.00018974 -0.048874 -2.4891E-05 509.2919521574158 57.301 0.10222 60.796 60.723 60.826 3.4942 10 8 2 0 0 0 0.11705 1 12397 12397 10.824 1.4765 1 54352 29915 5001 18983 18994 34645 34645 0.06188136316609416 PFAKPLPTF 9 Unmodified _PFAKPLPTF_ 0 0 0 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|7|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|8|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|4|intron;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 509.771728515625 2 509.292028 1016.5695 0.42085 0.00021433 -0.0094305 -4.8029E-06 0.41141 0.00020953 509.2921697120438 57.269 0.31413 60.783 60.636 60.95 3.5142 27 25 2 0 0 0 0.099407 1 12331 12331 19.257 9.1831 1 79380 29916 5001 18983 18994 34646 34646 0.06188136316609416 PFAKPLPTF 9 Unmodified _PFAKPLPTF_ 0 0 0 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|7|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|8|intron;ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|4|intron;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron ENSG00000183495.14,EP400,chr12,+,I4.1,131979794,131981488|34|7.2|3|intron MULTI-SECPEP UPN48_class_I_Rep_3 7 509.7716064453125 2 509.292028 1016.5695 0.19495 9.9289E-05 0.22911 0.00011669 0.42407 0.00021597 509.2924849307462 57.163 0.095486 60.705 60.656 60.752 3.5427 11 7 2 0 0 0 0.10699 1 12264 12264 15.847 5.0233 1 66854 29917 5001 18983 18994 34647 34647 0.06188136316609416 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS UPN48_class_I_Rep_1 5 496.2659912109375 2 496.26601 990.517468 0.22273 0.00011053 -0.17909 -8.8875E-05 0.043644 2.1659E-05 496.26583883195843 69.88 0.57782 73.34 73.082 73.66 3.4598 83 44 2 0 0 0 0.15122 4 16231 16192;16231;16270;16307 25.399 6.1423 1 192160 29918 4939 18984 18995 34648;34649;34650;34651 34649 0.021829729028468137 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MSMS UPN48_class_I_Rep_1 5 496.26531982421875 2 496.26601 990.517468 NaN NaN NaN NaN NaN NaN NaN 70.23 1 73.69 73.19 74.19 3.4598 0 0 0 0.37476 1 16351 16351 6.7232 0 1 29919 4939 18984 18995 34652 34652 0.021829729028468137 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS UPN48_class_I_Rep_2 6 496.2657165527344 2 496.26601 990.517468 0.27654 0.00013724 -0.15809 -7.8455E-05 0.11845 5.8782E-05 496.26583921528345 69.737 0.51199 73.258 73.001 73.513 3.5216 68 38 2 0 0 0 0.21527 2 16141 16141;16207 19.257 5.3509 1 175750 29920 4939 18984 18995 34653;34654 34653 0.021829729028468137 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS UPN48_class_I_Rep_3 7 496.26556396484375 2 496.26601 990.517468 0.31199 0.00015483 -0.063217 -3.1373E-05 0.24878 0.00012346 496.26584709916716 69.655 0.72893 73.168 72.897 73.626 3.5128 107 59 3 0 0 0 0.023254 3 16113 16033;16075;16113 61.357 29.052 1 155470 29921 4939 18984 18995 34655;34656;34657 34657 0.021829729028468137 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2598876953125 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 25.415 1 25.415 24.915 25.915 0 0 0 0 0.39326 1 3482 3482 2.3027 0.24298 1 + 29922 28873 18985 18996 34658 34658 -0.04223138841302898 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.25830078125 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 27.516 1 27.516 27.016 28.016 0 0 0 0 0.39326 1 4095 4095 2.3027 0 1 + 29923 28873 18985 18996 34659 34659 -0.04223138841302898 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2592163085938 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 88.131 1 88.131 87.631 88.631 0 0 0 0 0.381 1 21151 21151 5.2307 2.3415 1 + 29924 28873 18985 18996 34660 34660 -0.04223138841302898 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2587890625 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 92.646 1 92.646 92.146 93.146 0 0 0 0 0.39326 1 22428 22428 2.3027 0 1 + 29925 28873 18985 18996 34661 34661 -0.04223138841302898 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.747802734375 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 98.107 1 98.107 97.607 98.607 0 0 0 0 0.39326 1 23885 23885 2.3027 0 1 + 29926 28873 18985 18996 34662 34662 -0.04223138841302898 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7483520507812 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 101.74 1 101.74 101.24 102.24 0 0 0 0 0.39326 1 24822 24822 2.3027 0 1 + 29927 28873 18985 18996 34663 34663 -0.04223138841302898 PFCALWICF 9 Unmodified _PFCALWICF_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2586669921875 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 116.3 1 116.3 115.8 116.8 0 0 0 0 0.39326 1 28785 28785 2.3027 0 1 + 29928 28873 18985 18996 34664 34664 -0.04223138841302898 PFCCCCCY 8 Unmodified _PFCCCCCY_ 0 0 0 MLT1D_dup842|chr1:159921155-159921634:+|2.4681775421708534|0.3162326992167664|2.96|151.0|36|3|anti-sense MLT1D_dup842|chr1:159921155-159921634:+|2.4681775421708534|0.3162326992167664|2.96|151.0|36|3|anti-sense MLT1D_dup842|chr1:159921155-159921634:+|2.4681775421708534|0.3162326992167664|2.96|151.0|36|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 471.79534912109375 2 471.127773 940.240993 0.10005 4.7134E-05 -0.973 -0.00045841 -0.87295 -0.00041127 471.128536247629 35.362 0.072243 35.362 35.306 35.379 0 5 4 2 0 0 0 0.72333 1 6425 6425 0 0 1 71013 29929 16360 18986 18997 34665 34665 -0.23151747515578336 PFCFFMILTF 10 Unmodified _PFCFFMILTF_ 0 0 0 L1MC4_dup8995|chr6:38121513-38122135:-|1.2172491072372835|0.0307978575697007|5.3|151.0|30|2|anti-sense L1MC4_dup8995|chr6:38121513-38122135:-|1.2172491072372835|0.0307978575697007|5.3|151.0|30|2|anti-sense L1MC4_dup8995|chr6:38121513-38122135:-|1.2172491072372835|0.0307978575697007|5.3|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_1 2 633.3086547851562 2 633.308506 1264.60246 NaN NaN NaN NaN NaN NaN NaN 38.011 1 41.676 41.176 42.176 3.6652 0 0 0 0.53105 1 7278 7278 1.6526 0 1 29930 11537 18987 18998 34666 34666 -0.01925740947194754 PFCHLLEE 8 Unmodified _PFCHLLEE_ 0 0 0 REV__L1MB8_dup11861|chr12:82720056-82720829:-|1.2451313742003955|0.0491701412962424|4.66|150.0|49|2|anti-sense REV__L1MB8_dup11861|chr12:82720056-82720829:-|1.2451313742003955|0.0491701412962424|4.66|150.0|49|2|anti-sense MSMS UPN48_class_I_Rep_3 7 494.235107421875 2 494.233853 986.453153 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.53 118.03 119.03 3.6433 0 0 0 0.40604 1 27329 27329 2.5775 0 1 + 29931 26348 18988 18999 34667 34667 -0.04061550245603485 PFCKTFDLE 9 Unmodified _PFCKTFDLE_ 0 0 0 REV__L1MC_dup6237|chr13:51716723-51717150:+|1.177524151674531|0.0145956470043254|6.33|151.0|24|2|anti-sense REV__L1MC_dup6237|chr13:51716723-51717150:+|1.177524151674531|0.0145956470043254|6.33|151.0|24|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2586059570312 2 550.260068 1098.50558 NaN NaN NaN NaN NaN NaN NaN 31.311 1 31.311 30.811 31.811 0 0 0 0 0.39428 1 5215 5215 2.0598 0.21551 1 + 29932 26474 18989 19000 34668 34668 -0.0397301190264443 PFCLHYWL 8 Unmodified _PFCLHYWL_ 0 0 0 L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|76|2|anti-sense L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|76|2|anti-sense L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|76|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 539.3026733398438 2 539.762581 1077.51061 -0.00086389 -4.663E-07 -1.7466 -0.00094277 -1.7475 -0.00094324 539.7614498229957 33.249 0.50925 36.69 36.522 37.031 3.4406 43 37 2 0 0 0 0.72333 1 5832 5832 0.79363 0 1 68378 29933 13016 18990 19001 34669 34669 -0.02504663249396799 PFCLHYWL 8 Unmodified _PFCLHYWL_ 0 0 0 L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|76|2|anti-sense L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|76|2|anti-sense L1MEc_dup13569|chr12:48058326-48060058:-|1.9006010233531248|0.394069938230204|2.27|151.0|76|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 539.3019409179688 2 539.762581 1077.51061 -0.15229 -8.2198E-05 -1.1334 -0.00061178 -1.2857 -0.00069398 539.7620146281736 33.552 0.46183 36.827 36.572 37.034 3.2748 45 32 2 0 0 0 0.72333 1 5970 5970 0.79363 0 1 38853 29934 13016 18990 19001 34670 34670 -0.02504663249396799 PFCTKCSIL 9 Unmodified _PFCTKCSIL_ 0 0 0 REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|10|1|sense REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.2533264160156 2 506.253731 1010.49291 0.29956 0.00015165 -0.52344 -0.00026499 -0.22388 -0.00011334 506.2534357614593 71.198 0.31316 74.749 74.463 74.776 3.5505 85 35 3 0 0 0 0.15122 1 16586 16586 25.399 0.72543 1 419890 + 29935 23815 18991 19002 34671 34671 -0.011917465665419513 PFCTKCSIL 9 Unmodified _PFCTKCSIL_ 0 0 0 REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|10|1|sense REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.25384521484375 2 506.253731 1010.49291 0.32708 0.00016559 -0.55362 -0.00028027 -0.22654 -0.00011469 506.25335453767013 71.239 0.87406 74.757 74.364 75.238 3.5185 142 83 2 0 0 0 0.15122 1 16515 16515 25.399 0.72543 1 445240 + 29936 23815 18991 19002 34672 34672 -0.011917465665419513 PFCTKCSIL 9 Unmodified _PFCTKCSIL_ 0 0 0 REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|10|1|sense REV__HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|10|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 506.253731 1010.49291 0.29956 0.00015165 -0.52344 -0.00026499 -0.22388 -0.00011334 506.2534357614593 71.198 0.31316 74.749 74.463 74.776 3.5505 -0.082104 1.8706E-05 NaN 25.399 85 35 3 NaN NaN NaN NaN 0 NaN NaN 0 419890 + 29937 23815 18991 19002 -0.011917465665419513 PFCTLFYSF 9 Unmodified _PFCTLFYSF_ 0 0 0 REV__HAL1_dup21372|chr18:63223426-63224759:+|2.584294870112116|0.0383801322213066|6.07|151.0|75|3|anti-sense REV__HAL1_dup21372|chr18:63223426-63224759:+|2.584294870112116|0.0383801322213066|6.07|151.0|75|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.7591552734375 2 562.759704 1123.50485 -0.17585 -9.8962E-05 -0.93667 -0.00052712 -1.1125 -0.00062608 562.759113677116 30.716 0.58743 34.028 33.725 34.313 3.3116 84 47 2 0 0 0 0.46434 1 5189 5189 4.3292 0 1 142640 + 29938 23403 18992 19003 34673 34673 -0.05195806551705573 PFDDYVLY 8 Unmodified _PFDDYVLY_ 0 0 0 REV__Charlie17_dup528|chr15:64547905-64548478:+|2.549526965463325|0.0150751316489147|7.4|151.0|29|1|anti-sense REV__Charlie17_dup528|chr15:64547905-64548478:+|2.549526965463325|0.0150751316489147|7.4|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.2734985351562 2 516.239658 1030.46476 NaN NaN NaN NaN NaN NaN NaN 25.207 1 28.844 28.344 29.344 3.6363 0 0 0 0.40738 1 3038 3038 0.79363 0 1 + 29939 17292 18993 19004 34674 34674 -0.04925029950618409 PFDHNECEKS 10 Unmodified _PFDHNECEKS_ 0 0 0 nc|ENSG00000161298|Q96SR6-3|ZNF382;nc|ENSG00000161298|Q96SR6-2|ZNF382;ENSG00000161298|ENST00000292928|ZNF382 nc|ENSG00000161298|Q96SR6-3|ZNF382 nc|ENSG00000161298|Q96SR6-3|ZNF382 MSMS UPN47_class_I_Rep_2 3 603.2486572265625 2 603.24822 1204.48189 NaN NaN NaN NaN NaN NaN NaN 69.197 1 72.473 71.973 72.973 3.2761 0 0 0 0.53105 1 16789 16789 1.1933 0 1 29940 3900 18994 19005 34675 34675 -0.11217477407126353 PFDRFDAAKF 10 Unmodified _PFDRFDAAKF_ 0 0 0 nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000203995|ENST00000371528|ZYG11A nc|ENSG00000203995|Q6WRX3-2|ZYG11A nc|ENSG00000203995|Q6WRX3-2|ZYG11A MULTI-MSMS UPN47_class_I_Rep_3 4 607.3038940429688 2 607.303655 1212.59276 0.37237 0.00022614 -1.016 -0.00061705 -0.64367 -0.00039091 607.3030918500996 57.383 0.72713 60.551 60.283 61.011 3.1681 97 62 3 0 0 0 0.55448 1 13261 13261 4.897 1.6157 1 129870 29941 5499 18995 19006 34676 34676 -0.0050346963676020096 PFFALCFPAF 10 Unmodified _PFFALCFPAF_ 0 0 0 MLT1O_dup952|chr3:40494464-40494956:-|1.153159588736294|0.2090083416277137|2.46|151.0|26|2|anti-sense MLT1O_dup952|chr3:40494464-40494956:-|1.153159588736294|0.2090083416277137|2.46|151.0|26|2|anti-sense MLT1O_dup952|chr3:40494464-40494956:-|1.153159588736294|0.2090083416277137|2.46|151.0|26|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.2872314453125 2 580.285889 1158.55722 0.47995 0.00027851 1.3123 0.0007615 1.7922 0.00104 580.2867215735346 69.288 0.10667 72.809 72.722 72.829 3.5216 14 9 2 0 0 0 0.49259 1 16046 16046 12.532 2.4576 1 192120 29942 16494 18996 19007 34677 34677 -0.015712234180909945 PFFCWVWIW 9 Unmodified _PFFCWVWIW_ 0 0 0 L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|160|1|anti-sense L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|160|1|anti-sense L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|160|1|anti-sense MSMS UPN47_class_I_Rep_2 3 642.3076171875 2 642.307155 1282.59976 NaN NaN NaN NaN NaN NaN NaN 94.753 1 98.225 97.725 98.725 3.472 0 0 0 0.40038 1 23342 23342 0.6015 0 1 29943 15214 18997 19008 34678 34678 -0.030238282898608304 PFFEVKLSG 9 Unmodified _PFFEVKLSG_ 0 0 0 REV__nc|ENSG00000139746|Q5T8P6-6|RBM26 REV__nc|ENSG00000139746|Q5T8P6-6|RBM26 MSMS UPN48_class_I_Rep_3 7 512.2813110351562 2 512.279118 1022.54368 NaN NaN NaN NaN NaN NaN NaN 32.6 1 36.29 35.79 36.79 3.6896 0 0 0 0.39518 1 4973 4973 1.8442 0 1 + 29944 19319 18998 19009 34679 34679 0.033312420743413895 PFFFFEDY 8 Unmodified _PFFFFEDY_ 0 0 0 ENST00000545576.1_1_12:8756882-8757648:-|nuORF ENST00000545576.1_1_12:8756882-8757648:-|nuORF ENST00000545576.1_1_12:8756882-8757648:-|nuORF MSMS UPN48_class_I_Rep_1 5 556.241455078125 2 556.242201 1110.46985 NaN NaN NaN NaN NaN NaN NaN 87.169 1 90.787 90.287 91.287 3.6187 0 0 0 0.40738 1 20885 20885 0.79363 0 1 29945 7376 18999 19010 34680 34680 -0.08096726087978823 PFFFFLLSM 9 Unmodified _PFFFFLLSM_ 0 0 0 L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|54|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|54|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.795166015625 2 574.796089 1147.57763 0.51794 0.00029771 -1.2621 -0.00072543 -0.74412 -0.00042772 574.7952677023541 55.516 0.75402 58.826 58.51 59.264 3.3102 88 43 3 0 0 0 0.40174 1 12584 12584 7.9102 0.3012 1 179710 29946 10927 19000 19011 34681 34681 0.009739472417322759 PFFFFNFF 8 Unmodified _PFFFFNFF_ 0 0 0 L1ME4a_dup19880|chrX:74273017-74273172:+|2.128144153936852|0.0338324928044987|5.98|150.0|11|2|anti-sense L1ME4a_dup19880|chrX:74273017-74273172:+|2.128144153936852|0.0338324928044987|5.98|150.0|11|2|anti-sense L1ME4a_dup19880|chrX:74273017-74273172:+|2.128144153936852|0.0338324928044987|5.98|150.0|11|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.764892578125 2 556.765646 1111.51674 NaN NaN NaN NaN NaN NaN NaN 87.941 1 91.597 91.097 92.097 3.6563 0 0 0 0.40738 1 21986 21986 0.79363 0 1 29947 12859 19001 19012 34682 34682 -0.03455821746183574 PFFHFLFC 8 Unmodified _PFFHFLFC_ 0 0 0 REV__LTR78B_dup1615|chr7:139966554-139966874:-|1.9893776835590211|0.0474981985159298|5.39|151.0|13|1|anti-sense REV__LTR78B_dup1615|chr7:139966554-139966874:-|1.9893776835590211|0.0474981985159298|5.39|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.2523803710938 2 529.251849 1056.48914 NaN NaN NaN NaN NaN NaN NaN 29.182 1 32.939 32.439 33.439 3.7578 0 0 0 0.40738 1 4599 4599 0.79363 0 1 + 29948 31010 19002 19013 34683 34683 -0.036840482780689854 PFFKSQLTF 9 Unmodified _PFFKSQLTF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 558.2994384765625 2 557.800217 1113.58588 0.51469 0.00028709 -0.79442 -0.00044313 -0.27973 -0.00015603 557.8000894329505 69.631 1.0972 73.086 72.636 73.733 3.4548 336 83 6 0 0 0 0.28552 4 16279 16279;16288;16291;16322 14.838 3.198 1 1567300 29949 12494 19003 19014 34684;34685;34686;34687 34684 0.033632174827062045 PFFKSQLTF 9 Unmodified _PFFKSQLTF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 558.29833984375 2 557.800217 1113.58588 0.49575 0.00027653 -0.76981 -0.0004294 -0.27405 -0.00015287 557.8001100570709 69.463 1.187 72.984 72.52 73.707 3.5216 290 97 5 0 0 0 0.28552 3 16250 16239;16243;16250 14.838 5.4551 1 1888800 29950 12494 19003 19014 34688;34689;34690 34690 0.033632174827062045 PFFKSQLTF 9 Unmodified _PFFKSQLTF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|135|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 558.2984008789062 2 557.800217 1113.58588 0.46995 0.00026214 -0.86151 -0.00048055 -0.39156 -0.00021841 557.800105764204 69.35 1.1396 72.863 72.474 73.614 3.5128 294 89 5 0 0 0 0.28552 3 16080 16080;16115;16135 14.838 14.838 1 1798400 29951 12494 19003 19014 34691;34692;34693 34691 0.033632174827062045 PFFKYLNS 8 Unmodified _PFFKYLNS_ 0 0 0 REV__L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|21|2|sense REV__L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|21|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 508.2112731933594 2 508.26601 1014.51747 0.15229 7.7402E-05 -0.1191 -6.0535E-05 0.033184 1.6866E-05 508.2658048887357 62.185 0.94463 65.444 65.079 66.024 3.2594 100 63 2 0 0 0 0.72333 1 14827 14827 2.0598 0 1 110320 + 29952 24434 19004 19015 34694 34694 0.010789729028488182 PFFVLDILV 9 Unmodified _PFFVLDILV_ 0 0 0 REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|75|3|anti-sense REV__L1MC4a_dup4218|chr7:35815001-35816012:-|1.6284650121730504|0.0289900350131186|5.81|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_1 2 531.81689453125 2 531.815336 1061.61612 NaN NaN NaN NaN NaN NaN NaN 80.721 1 84.208 83.708 84.708 3.4874 0 0 0 0.39428 1 20116 20116 2.0598 0 1 + 29953 26995 19005 19016 34695 34695 0.08777576147895161 PFFWPYYI 8 Unmodified _PFFWPYYI_ 0 0 0 L1M5_dup53380|chr21:36351923-36352433:+|1.0989820869059783|0.036036529955458|4.93|151.0|36|3|anti-sense L1M5_dup53380|chr21:36351923-36352433:+|1.0989820869059783|0.036036529955458|4.93|151.0|36|3|anti-sense L1M5_dup53380|chr21:36351923-36352433:+|1.0989820869059783|0.036036529955458|4.93|151.0|36|3|anti-sense MSMS UPN46_class_I_Rep_3 1 566.7776489257812 2 566.778754 1131.54295 NaN NaN NaN NaN NaN NaN NaN 76.348 1 76.348 75.848 76.848 0 0 0 0 0.40738 1 17804 17804 0.79363 0.10326 1 29954 9199 19006 19017 34696 34696 -0.017555525747411593 PFFYLFHSC 9 Unmodified _PFFYLFHSC_ 0 0 0 REV__HAL1_dup20857|chr18:2903754-2904827:-|2.882188513863032|0.2921272758412936|3.3|151.0|57|2|anti-sense REV__HAL1_dup20857|chr18:2903754-2904827:-|2.882188513863032|0.2921272758412936|3.3|151.0|57|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 580.7670288085938 2 580.76532 1159.51609 0.50505 0.00029331 1.397 0.00081133 1.9021 0.0011046 580.7660368065058 59.572 0.10838 62.845 62.766 62.874 3.2731 9 6 2 0 0 0 0.32219 1 13874 13874 12.532 3.1484 1 47742 + 29955 23401 19007 19018 34697 34697 -0.05728984457550723 PFGAETFYEV 10 Unmodified _PFGAETFYEV_ 0 0 0 REV__nc|ENSG00000141858|Q6SPF0|SAMD1 REV__nc|ENSG00000141858|Q6SPF0|SAMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 580.2691040039062 2 580.268947 1158.52334 0.41872 0.00024297 0.040755 2.3649E-05 0.45947 0.00026662 580.2687186339421 71.178 1.0084 74.468 74.083 75.092 3.2899 254 88 4 0 0 0 0.52083 2 17503 17503;17560 9.3831 3.6513 1 779430 + 29956 31999 19008 19019 34698;34699 34698 -0.04957973376122027 PFGPLGAFRQ 10 Unmodified _PFGPLGAFRQ_ 0 0 0 REV__ENST00000262376.10_1_16:4931488-4931788:+|nuORF REV__ENST00000262376.10_1_16:4931488-4931788:+|nuORF MSMS UPN48_class_I_Rep_1 5 545.2967529296875 2 545.295633 1088.57671 NaN NaN NaN NaN NaN NaN NaN 37.213 1 40.72 40.22 41.22 3.507 0 0 0 0.53105 1 6303 6303 3.2813 0.97858 1 + 29957 21569 19009 19020 34700 34700 0.03596868917043139 PFGRLHSY 8 Unmodified _PFGRLHSY_ 0 0 0 L1MC1_dup3583|chr4:105174416-105176124:+|3.215223292510355|0.0876515971560796|5.2|151.0|95|2|anti-sense L1MC1_dup3583|chr4:105174416-105176124:+|3.215223292510355|0.0876515971560796|5.2|151.0|95|2|anti-sense L1MC1_dup3583|chr4:105174416-105176124:+|3.215223292510355|0.0876515971560796|5.2|151.0|95|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.753173828125 2 488.753601 975.49265 0.18683 9.1315E-05 -0.52764 -0.00025789 -0.34081 -0.00016657 488.75331823047867 43.282 0.36647 47.043 46.842 47.209 3.7617 46 27 2 0 0 0 0.82752 1 8132 8132 2.5775 0 1 82455 29958 11131 19010 19021 34701 34701 0.003923378201193373 PFHHPYHFW 9 Unmodified _PFHHPYHFW_ 0 0 0 REV__L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|129|1|anti-sense REV__L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|129|1|anti-sense MSMS UPN48_class_I_Rep_3 7 634.291748046875 2 634.293425 1266.5723 NaN NaN NaN NaN NaN NaN NaN 34.655 1 38.327 37.827 38.827 3.6721 0 0 0 0.40038 1 5526 5526 0.6015 0.076735 1 + 29959 29916 19011 19022 34702 34702 -0.0503259550587245 PFHKRWRGF 9 Unmodified _PFHKRWRGF_ 0 0 0 REV__L1MEd_dup19234|chr17:35683694-35684331:+|1.216659770909454|0.026392677023088|5.53|151.0|29|1|anti-sense REV__L1MEd_dup19234|chr17:35683694-35684331:+|1.216659770909454|0.026392677023088|5.53|151.0|29|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 410.5242919921875 3 410.892953 1229.65703 -0.19877 -8.1673E-05 0.49199 0.00020215 0.29322 0.00012048 410.8934873815627 49 0.047409 52.659 52.626 52.674 3.6592 4 2 2 0 0 0 0.12545 1 10620 10620 0.26902 0 1 11732 + 29960 28555 19012 19023 34703 34703 0.05138775030718534 PFIESSFHE 9 Unmodified _PFIESSFHE_ 0 0 0 Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|78|1|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|78|1|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7520751953125 2 546.753464 1091.49238 NaN NaN NaN NaN NaN NaN NaN 40.818 1 44.19 43.69 44.69 3.3712 0 0 0 0.39518 1 8167 8167 1.8442 0.19162 1 29961 33119 19013 19024 34704 34704 -0.04971126690384153 PFIHFIKPFH 10 Unmodified _PFIHFIKPFH_ 0 0 0 REV__HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|71|1|anti-sense REV__HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|71|1|anti-sense MSMS UPN48_class_I_Rep_2 6 641.8599243164062 2 641.858401 1281.70225 NaN NaN NaN NaN NaN NaN NaN 106.08 1 109.76 109.26 110.26 3.6834 0 0 0 0.53105 1 25088 25088 6.2058 0 1 + 29962 23751 19014 19025 34705 34705 0.07266580773261921 PFIVLFTY 8 Unmodified _PFIVLFTY_ 0 0 0 REV__MER34A1_dup355|chr7:105305642-105306091:-|1.0116692415378217|0.1403743280035089|2.85|151.0|11|2|sense REV__MER34A1_dup355|chr7:105305642-105306091:-|1.0116692415378217|0.1403743280035089|2.85|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 500.279052734375 2 500.281129 998.547705 NaN NaN NaN NaN NaN NaN NaN 58.081 1 61.596 61.096 62.096 3.5142 0 0 0 0.39819 1 12619 12619 8.5933 0.98433 1 + 29963 31266 19015 19026 34706 34706 0.04837331568046466 PFIYVPIF 8 Unmodified _PFIYVPIF_ 0 0 0 L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|47|1|anti-sense L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|47|1|anti-sense L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_2 3 498.2857360839844 2 498.283672 994.552791 NaN NaN NaN NaN NaN NaN NaN 31.273 1 34.743 34.243 35.243 3.4691 0 0 0 0.40581 1 5273 5273 2.8892 0 1 29964 9389 19016 19027 34707 34707 0.05529635430673352 PFKFGKRF 8 Unmodified _PFKFGKRF_ 0 0 0 L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|52|3|sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|52|3|sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|52|3|sense MSMS UPN47_class_I_Rep_1 2 513.7980346679688 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 83.329 1 86.867 86.367 87.367 3.5386 0 0 0 0.40746 1 20838 20838 0.69038 0 1 29965 12922 19017 19028 34708 34708 0.0693037813061892 PFKLELHS 8 Unmodified _PFKLELHS_ 0 0 0 REV__THE1C_dup3639|chr6:2297835-2298195:+|1.7643639662205148|0.0254352744852576|6.12|151.0|10|3|sense REV__THE1C_dup3639|chr6:2297835-2298195:+|1.7643639662205148|0.0254352744852576|6.12|151.0|10|3|sense MSMS UPN48_class_I_Rep_1 5 485.85528564453125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 24.954 1 28.52 28.02 29.02 3.5667 0 0 0 0.40746 1 2833 2833 0.69038 0 1 + 29966 32279 19018 19029 34709 34709 0.042383752771456784 PFKLVKKKM 9 Unmodified _PFKLVKKKM_ 0 0 0 REV__chr3:111598210-111606700|88|15.75|0.11|7.11|+|0|CD96,CD96|1 REV__chr3:111598210-111606700|88|15.75|0.11|7.11|+|0|CD96,CD96|1 MSMS UPN47_class_I_Rep_1 2 559.7777099609375 2 559.859555 1117.70456 NaN NaN NaN NaN NaN NaN NaN 22.36 1 26.035 25.535 26.535 3.6749 0 0 0 0.4007 1 2589 2589 0.52476 0 1 + 29967 17447 19019 19030 34710 34710 0.1504129318670948 PFKRRRRRAQT 11 Unmodified _PFKRRRRRAQT_ 0 0 0 REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 491.29925537109375 3 491.299153 1470.87563 0.48781 0.00023966 -0.043919 -2.1577E-05 0.44389 0.00021808 491.299026763051 106.01 0.87233 109.55 109.26 110.13 3.5345 389 130 4 0 0 0 0.68178 1 25712 25712 0.36667 0.36667 1 2944700 + 29968 21769 19020 19031 34711 34711 0.15902759602272454 PFLCPFVFI 9 Unmodified _PFLCPFVFI_ 0 0 0 L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_3 7 541.7904052734375 2 541.790807 1081.56706 NaN NaN NaN NaN NaN NaN NaN 29.791 1 33.519 33.019 34.019 3.7286 0 0 0 0.381 1 4218 4218 5.2307 0 1 29969 14380 19021 19032 34712 34712 0.02953964587277369 PFLCPFVFI 9 Unmodified _PFLCPFVFI_ 0 0 0 L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_3 7 541.79052734375 2 541.790807 1081.56706 NaN NaN NaN NaN NaN NaN NaN 29.915 1 33.644 33.144 34.144 3.7286 0 0 0 0.381 1 4253 4253 5.2307 0 1 29970 14380 19021 19032 34713 34713 0.02953964587277369 PFLCPFVFI 9 Unmodified _PFLCPFVFI_ 0 0 0 L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense L1PA4_dup6719|chr9:114358699-114358987:+|1.8249835921942203|0.0834145329153479|4.45|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_3 7 541.7904663085938 2 541.790807 1081.56706 NaN NaN NaN NaN NaN NaN NaN 30.084 1 33.813 33.313 34.313 3.7286 0 0 0 0.381 1 4296 4296 5.2307 0 1 29971 14380 19021 19032 34714 34714 0.02953964587277369 PFLCRCVFI 9 Unmodified _PFLCRCVFI_ 0 0 0 L1PA4_dup1605|chr2:201036028-201038907:+|1.093121775229763|0.0952088171298298|3.52|151.0|89|1|anti-sense L1PA4_dup1605|chr2:201036028-201038907:+|1.093121775229763|0.0952088171298298|3.52|151.0|89|1|anti-sense L1PA4_dup1605|chr2:201036028-201038907:+|1.093121775229763|0.0952088171298298|3.52|151.0|89|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.2848510742188 2 549.285366 1096.55618 0.17204 9.4501E-05 -0.97493 -0.00053551 -0.80289 -0.00044101 549.2848899638713 46.365 0.66896 50.065 49.775 50.444 3.6999 111 44 3 0 0 0 0.11897 1 9846 9846 30.225 0 1 237840 29972 14326 19022 19033 34715 34715 0.011762389413661367 PFLEWFYR 8 Unmodified _PFLEWFYR_ 0 0 0 REV__ENST00000518696.5_1_8:121457540-121457615:-|nuORF REV__ENST00000518696.5_1_8:121457540-121457615:-|nuORF MSMS UPN46_class_I_Rep_3 1 579.6049194335938 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 72.721 1 72.721 72.221 73.221 0 0 0 0 0.40738 1 16823 16823 0.79363 0 1 + 29973 22770 19023 19034 34716 34716 -0.0014564931450422591 PFLFFLEMY 9 Unmodified _PFLFFLEMY_ 0 0 0 REV__L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|55|3|anti-sense REV__L1MEd_dup15631|chr11:121579827-121580564:-|1.2881895225105189|0.0340844959593589|5.24|150.0|55|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 603.8004760742188 2 603.798829 1205.5831 0.4617 0.00027877 -0.12496 -7.5452E-05 0.33673 0.00020332 603.7987810810961 43.282 0.61281 46.92 46.598 47.21 3.6385 66 50 2 0 0 0 0.48643 2 8015 8015;8028 2.0598 0.21551 1 132280 + 29974 28539 19024 19035 34717;34718 34717 -0.011463739664577588 PFLFKLPE 8 Unmodified _PFLFKLPE_ 0 0 0 chr6:44247195-44252163|32|41.06|0.04|10.14|+|0|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|0|HSP90AB1,None|1 chr6:44247195-44252163|32|41.06|0.04|10.14|+|0|HSP90AB1,None|1 MSMS UPN48_class_I_Rep_1 5 495.78509521484375 2 495.786579 989.558604 NaN NaN NaN NaN NaN NaN NaN 26.533 1 30.1 29.6 30.6 3.5667 0 0 0 0.40738 1 3273 3273 0.79363 0 1 29975 615 19025 19036 34719 34719 0.06340733942317911 PFLFSLRLSQ 10 Unmodified _PFLFSLRLSQ_ 0 0 0 REV__MER11C_dup624|chr10:38099934-38100997:-|1.009167804325468|0.0521495339589895|4.27|151.0|37|1|anti-sense REV__MER11C_dup624|chr10:38099934-38100997:-|1.009167804325468|0.0521495339589895|4.27|151.0|37|1|anti-sense MSMS UPN47_class_I_Rep_1 2 604.3453369140625 2 604.345323 1206.67609 NaN NaN NaN NaN NaN NaN NaN 71.283 1 74.658 74.158 75.158 3.3751 0 0 0 0.53105 1 17370 17370 1.1933 0 1 + 29976 31107 19026 19037 34720 34720 0.08102266811124537 PFLHIKQG 8 Unmodified _PFLHIKQG_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|470|3|anti-sense;HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|305|1|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|470|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|470|3|anti-sense MSMS UPN48_class_I_Rep_2 6 470.2747802734375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 53.653 1 57.262 56.762 57.762 3.6098 0 0 0 0.40746 1 11265 11265 0.69038 0 1 29977 8035 19027 19038 34721 34721 0.06206098859627218 PFLHPLFR 8 Unmodified _PFLHPLFR_ 0 0 0 HAL1_dup6625|chr4:139812260-139814004:+|2.2702244136747165|0.0205816021546801|6.79|151.0|80|2|anti-sense HAL1_dup6625|chr4:139812260-139814004:+|2.2702244136747165|0.0205816021546801|6.79|151.0|80|2|anti-sense HAL1_dup6625|chr4:139812260-139814004:+|2.2702244136747165|0.0205816021546801|6.79|151.0|80|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7979736328125 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 89.958 1 93.584 93.084 94.084 3.6255 0 0 0 0.40738 1 21619 21619 0.79363 0 1 29978 7904 19028 19039 34722 34722 0.0693037813061892 PFLMFTWW 8 Unmodified _PFLMFTWW_ 0 0 0 REV__L1MB3_dup12556|chr13:49675444-49676064:-|1.2112597557221656|0.0617226495303398|4.29|151.0|29|2|anti-sense REV__L1MB3_dup12556|chr13:49675444-49676064:-|1.2112597557221656|0.0617226495303398|4.29|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.238037109375 2 564.272781 1126.53101 NaN NaN NaN NaN NaN NaN NaN 31.286 1 34.586 34.086 35.086 3.2991 0 0 0 0.40738 1 5311 5311 0.79363 0.10326 1 + 29979 25813 19029 19040 34723 34723 -0.02719492589562833 PFLMRGHH 8 Unmodified _PFLMRGHH_ 0 0 0 ENSG00000248487|ENST00000273596|ABHD14A ENSG00000248487|ENST00000273596|ABHD14A ENSG00000248487|ENST00000273596|ABHD14A MSMS UPN47_class_I_Rep_3 4 497.7552795410156 2 497.755621 993.49669 NaN NaN NaN NaN NaN NaN NaN 25.751 1 29.099 28.599 29.599 3.3478 0 0 0 0.40738 1 3667 3667 0.79363 0 1 29980 5732 19030 19041 34724 34724 -0.00031895957795313734 PFLTRATKFL 10 Unmodified _PFLTRATKFL_ 0 0 0 L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|58|1|anti-sense L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|58|1|anti-sense L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.85693359375 2 597.355691 1192.69683 0.45155 0.00026974 -0.2532 -0.00015125 0.19836 0.00011849 597.8562120950553 83.482 0.57435 87.021 86.548 87.122 3.5386 85 58 2 0 0 0 0.56333 1 20791 20791 1.4819 0 1 64736 29981 12330 19031 19042 34725 34725 0.10818857190793096 PFLVKLLEHTL 11 Unmodified _PFLVKLLEHTL_ 0 0 0 HAL1_dup18274|chr14:49824729-49825459:+|1.9246821659368916|0.1266365640692593|3.93|151.0|19|3|sense HAL1_dup18274|chr14:49824729-49825459:+|1.9246821659368916|0.1266365640692593|3.93|151.0|19|3|sense HAL1_dup18274|chr14:49824729-49825459:+|1.9246821659368916|0.1266365640692593|3.93|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 437.26739501953125 3 437.267463 1308.78056 -0.28693 -0.00012546 0.97925 0.00042819 0.69232 0.00030273 437.6023019382814 51.58 0.40761 54.796 54.615 55.023 3.2163 41 22 3 0 0 0 0.68178 1 11518 11518 0.36667 0.20735 1 122940 29982 7837 19032 19043 34726 34726 0.1385196856786024 PFLVKLLEHTL 11 Unmodified _PFLVKLLEHTL_ 0 0 0 HAL1_dup18274|chr14:49824729-49825459:+|1.9246821659368916|0.1266365640692593|3.93|151.0|19|3|sense HAL1_dup18274|chr14:49824729-49825459:+|1.9246821659368916|0.1266365640692593|3.93|151.0|19|3|sense HAL1_dup18274|chr14:49824729-49825459:+|1.9246821659368916|0.1266365640692593|3.93|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 437.6020812988281 3 437.267463 1308.78056 0.10088 4.411E-05 -0.14249 -6.2305E-05 -0.04161 -1.8195E-05 437.26718877345627 51.196 1.3606 54.864 53.812 55.173 3.6679 196 86 3 0 0 0 0.65891 1 10545 10545 2.4348 0.8425 1 400340 29983 7837 19032 19043 34727 34727 0.1385196856786024 PFLYKRFLK 9 Unmodified _PFLYKRFLK_ 0 0 0 AluJo_dup57264|chr14:103464711-103464941:-|1.0509220512475597|0.0693830176540187|3.92|151.0|9|3|sense AluJo_dup57264|chr14:103464711-103464941:-|1.0509220512475597|0.0693830176540187|3.92|151.0|9|3|sense AluJo_dup57264|chr14:103464711-103464941:-|1.0509220512475597|0.0693830176540187|3.92|151.0|9|3|sense MSMS UPN46_class_I_Rep_3 1 606.3690795898438 2 606.368601 1210.72265 NaN NaN NaN NaN NaN NaN NaN 86.796 1 86.796 86.296 87.296 0 0 0 0 0.40038 1 20763 20763 0.6015 0 1 29984 118 19033 19044 34728 34728 0.12571751433074496 PFLYLILVE 9 Unmodified _PFLYLILVE_ 0 0 0 REV__L1ME1_dup13986|chr7:112828641-112830359:-|1.1449179285958544|0.0706112845929796|4.02|151.0|7|1|sense REV__L1ME1_dup13986|chr7:112828641-112830359:-|1.1449179285958544|0.0706112845929796|4.02|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 553.8298950195312 2 553.828443 1105.64233 NaN NaN NaN NaN NaN NaN NaN 81.407 1 85.092 84.592 85.592 3.685 0 0 0 0.39428 1 19270 19270 2.0598 0 1 + 29985 27606 19034 19045 34729 34729 0.09373845319373686 PFMTGTAS 8 Unmodified _PFMTGTAS_ 0 0 0 L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|48|2|anti-sense L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|48|2|anti-sense L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_3 7 406.18572998046875 2 406.186371 810.35819 NaN NaN NaN NaN NaN NaN NaN 77.842 1 81.444 80.944 81.944 3.6016 0 0 0 0.40738 1 18409 18409 0.79363 0 1 29986 8722 19035 19046 34730 34730 -0.054574837167933765 PFNEPIIY 8 Unmodified _PFNEPIIY_ 0 0 0 REV__L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|133|3|sense REV__L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|133|3|sense MSMS UPN47_class_I_Rep_1 2 496.75579833984375 2 496.758018 991.501483 NaN NaN NaN NaN NaN NaN NaN 57.955 1 61.392 60.892 61.892 3.437 0 0 0 0.32361 1 13345 13345 28.487 3.0875 1 + 29987 29870 19036 19047 34731 34731 0.005392666659531642 PFPAPGKTIK 10 Unmodified _PFPAPGKTIK_ 0 0 0 ENST00000532871.3_1_11:8720844-8728796:-|nuORF;ENST00000526701.5_1_11:8724978-8732445:-|nuORF;nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B ENST00000532871.3_1_11:8720844-8728796:-|nuORF ENST00000532871.3_1_11:8720844-8728796:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 528.3096313476562 2 528.316035 1054.61752 0.33416 0.00017654 -3.6267 -0.0019161 -3.2926 -0.0017395 528.3139094049764 93.124 0.080254 93.124 93.07 93.15 0 9 7 2 0 0 0 0.56478 1 22546 22546 0.45834 0 1 63068 29988 4242 19037 19048 34732 34732 0.09239210236660256 PFPFRGTH 8 Unmodified _PFPFRGTH_ 0 0 0 HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|247|2|anti-sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|247|2|anti-sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|247|2|anti-sense MSMS UPN47_class_I_Rep_1 2 479.7484436035156 2 479.748319 957.482085 NaN NaN NaN NaN NaN NaN NaN 26.938 1 30.704 30.204 31.204 3.7662 0 0 0 0.40738 1 3931 3931 0.79363 0 1 29989 8001 19038 19049 34733 34733 0.0016435516571391418 PFPGVSIH 8 Unmodified _PFPGVSIH_ 0 0 0 REV__ENSG00000091138|ENST00000340010|SLC26A3 REV__ENSG00000091138|ENST00000340010|SLC26A3 MULTI-SECPEP UPN48_class_I_Rep_3 7 427.3026428222656 2 427.231971 852.449388 0.13649 5.8312E-05 -0.01499 -6.4043E-06 0.1215 5.1908E-05 427.2319364373587 62.841 0.71837 66.35 65.887 66.606 3.5091 87 50 2 0 0 0 0.72333 1 14007 14007 14.582 0 1 182900 + 29990 18016 19039 19050 34734 34734 0.017261480428373943 PFPLIKKKKH 10 Unmodified _PFPLIKKKKH_ 0 0 0 REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|1|1|sense REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 618.4052124023438 2 618.402976 1234.7914 NaN NaN NaN NaN NaN NaN NaN 76.472 1 80.073 79.573 80.573 3.6011 0 0 0 0.53105 1 18054 18054 1.4819 0 1 + 29991 25599 19040 19051 34735 34735 0.18339415732771158 PFPNGLRLL 9 Unmodified _PFPNGLRLL_ 0 0 0 REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 513.7919311523438 2 513.808377 1025.6022 0.24135 0.00012401 -0.30142 -0.00015487 -0.060072 -3.0866E-05 514.3091804340962 45.075 0.094082 48.712 48.652 48.746 3.6372 8 5 2 0 0 0 0.48846 1 8589 8589 1.8442 0 1 51966 + 29992 22337 19041 19052 34736 34736 0.09042343439477918 PFPWFTFL 8 Unmodified _PFPWFTFL_ 0 0 0 L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|293|3|anti-sense L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|293|3|anti-sense L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|293|3|anti-sense MSMS UPN47_class_I_Rep_3 4 527.7725830078125 2 527.773471 1053.53239 NaN NaN NaN NaN NaN NaN NaN 111.02 1 114.55 114.05 115.05 3.529 0 0 0 0.40604 1 27238 27238 2.5775 0.27475 1 29993 13603 19042 19053 34737 34737 0.007764647708427219 PFREELAY 8 Unmodified _PFREELAY_ 0 0 0 nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1 nc|ENSG00000100427|Q15049-2|MLC1 nc|ENSG00000100427|Q15049-2|MLC1 MSMS UPN47_class_I_Rep_3 4 512.769287109375 2 512.758549 1023.50255 NaN NaN NaN NaN NaN NaN NaN 32.202 1 35.489 34.989 35.989 3.2867 0 0 0 0.40364 1 5588 5588 5.7604 0 1 29994 1506 19043 19054 34738 34738 -0.008265189651524452 PFRFQKWR 8 Unmodified _PFRFQKWR_ 0 0 0 REV__L1MB5_dup669|chr2:26086295-26087138:+|1.3829556251028574|0.0852066555040543|4.02|151.0|27|3|sense REV__L1MB5_dup669|chr2:26086295-26087138:+|1.3829556251028574|0.0852066555040543|4.02|151.0|27|3|sense MSMS UPN47_class_I_Rep_2 3 582.826904296875 2 582.824892 1163.63523 NaN NaN NaN NaN NaN NaN NaN 51.659 1 54.992 54.492 55.492 3.3338 0 0 0 0.40746 1 11462 11462 0.69038 0 1 + 29995 26087 19044 19055 34739 34739 0.05995970282174312 PFRFRKFP 8 Unmodified _PFRFRKFP_ 0 0 0 L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|144|3|anti-sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|144|3|anti-sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|144|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.8406982421875 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 111.09 1 114.72 114.22 115.22 3.6326 0 0 0 0.40604 1 26950 26950 2.5775 0 1 29996 12099 19045 19056 34740 34740 0.0754546939622287 PFRFRKFP 8 Unmodified _PFRFRKFP_ 0 0 0 L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|144|3|anti-sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|144|3|anti-sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|144|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.8163452148438 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 25.485 1 29.254 28.754 29.754 3.769 0 0 0 0.40746 1 3106 3106 0.69038 0 1 29997 12099 19045 19056 34741 34741 0.0754546939622287 PFRLGRSL 8 Unmodified _PFRLGRSL_ 0 0 0 HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|129|3|sense HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|129|3|sense HERVP71A-int_dup84|chr7:21502875-21507687:-|1.2011182804284044|0.1465197226971361|3.04|149.0|129|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.28411865234375 2 473.285069 944.555585 -0.13588 -6.431E-05 -1.5655 -0.00074095 -1.7014 -0.00080526 473.28428636858956 45.12 0.55824 48.476 48.191 48.749 3.3556 39 31 2 0 0 0 0.82752 1 9478 9478 4.3292 0 1 55745 29998 8411 19046 19057 34742 34742 0.08108903608183482 PFRNKDWTF 9 Unmodified _PFRNKDWTF_ 0 0 0 REV__ENSG00000214013|ENST00000318010|GANC REV__ENSG00000214013|ENST00000318010|GANC MSMS UPN48_class_I_Rep_3 7 605.8038330078125 2 605.803823 1209.59309 NaN NaN NaN NaN NaN NaN NaN 63.636 1 67.145 66.645 67.645 3.5091 0 0 0 0.38536 1 14243 14243 3.5965 0 1 + 29999 21255 19047 19058 34743 34743 -0.0033204991686943686 PFRRPYLF 8 Unmodified _PFRRPYLF_ 0 0 0 REV__L1ME1_dup27425|chr17:30403529-30404243:+|1.0162572148704598|0.0432197902339326|4.56|151.0|34|1|anti-sense REV__L1ME1_dup27425|chr17:30403529-30404243:+|1.0162572148704598|0.0432197902339326|4.56|151.0|34|1|anti-sense MSMS UPN46_class_I_Rep_3 1 548.307861328125 2 548.308544 1094.60253 NaN NaN NaN NaN NaN NaN NaN 101.66 1 101.66 101.16 102.16 0 0 0 0 0.40364 1 24802 24802 5.7604 0 1 + 30000 27716 19048 19059 34744 34744 0.05901763159295115 PFRWNTALDS 10 Unmodified _PFRWNTALDS_ 0 0 0 REV__MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|42|2|anti-sense REV__MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 603.798828125 2 603.798737 1205.58292 NaN NaN NaN NaN NaN NaN NaN 43.758 1 47.396 46.896 47.896 3.6385 0 0 0 0.53105 1 8182 8182 1.4819 0 1 + 30001 31226 19049 19060 34745 34745 -0.011646576421071586 PFSASLLGTLP 11 Unmodified _PFSASLLGTLP_ 0 0 0 ENSG00000122299|ENST00000355758|ZC3H7A ENSG00000122299|ENST00000355758|ZC3H7A ENSG00000122299|ENST00000355758|ZC3H7A MSMS UPN47_class_I_Rep_1 2 551.8106689453125 2 551.810782 1101.60701 NaN NaN NaN NaN NaN NaN NaN 66.416 1 69.774 69.274 70.274 3.3576 0 0 0 0.38417 1 15908 15908 4.897 0.36815 1 30002 2381 19050 19061 34746 34746 0.06027182791581254 PFSFGNSSYY 10 Unmodified _PFSFGNSSYY_ 0 0 0 L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|37|1|anti-sense L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|37|1|anti-sense L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_3 7 584.7506713867188 2 584.750921 1167.48729 NaN NaN NaN NaN NaN NaN NaN 64.677 1 68.185 67.685 68.685 3.5083 0 0 0 0.53105 1 14557 14557 1.4819 0 1 30003 11721 19051 19062 34747 34747 -0.08975430552982289 PFSFHIHSAGP 11 Unmodified _PFSFHIHSAGP_ 0 0 0 REV__ENSG00000183762|ENST00000400335|KREMEN1 REV__ENSG00000183762|ENST00000400335|KREMEN1 MSMS UPN48_class_I_Rep_3 7 598.7979736328125 2 598.795998 1195.57744 NaN NaN NaN NaN NaN NaN NaN 38.718 1 42.378 41.878 42.878 3.6595 0 0 0 0.38417 1 6688 6688 4.897 0.95262 1 + 30004 20796 19052 19063 34748 34748 -0.012523364339131149 PFSGHCQDPLY 11 Unmodified _PFSGHCQDPLY_ 0 0 0 REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|203|2|anti-sense REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|203|2|anti-sense MSMS UPN46_class_I_Rep_3 1 421.75225830078125 3 421.853612 1262.53901 NaN NaN NaN NaN NaN NaN NaN 29.676 1 29.676 29.176 30.176 0 0 0 0 0.38417 1 4732 4732 0.50596 0.09769 1 + 30005 25510 19053 19064 34749 34749 -0.0817601013075091 PFSKWPVNL 9 Unmodified _PFSKWPVNL_ 0 0 0 REV__MLT1L_dup7092|chrX:154074357-154074749:-|1.4354033864360816|0.0155509429547939|6.53|151.0|23|2|anti-sense REV__MLT1L_dup7092|chrX:154074357-154074749:-|1.4354033864360816|0.0155509429547939|6.53|151.0|23|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 544.2996826171875 2 544.300384 1086.58622 0.3139 0.00017086 0.17349 9.4428E-05 0.48739 0.00026528 544.2994904139442 64.07 0.079971 64.07 64.022 64.102 0 14 8 3 0 0 0 0.30034 1 14397 14397 13.906 0 1 168890 + 30006 31801 19054 19065 34750 34750 0.04638637202560858 PFSLSPISLF 10 Unmodified _PFSLSPISLF_ 0 0 0 REV__ENST00000234111.8_1_2:10585281-10588269:-|nuORF REV__ENST00000234111.8_1_2:10585281-10588269:-|nuORF MSMS UPN48_class_I_Rep_1 5 554.30615234375 2 554.307875 1106.6012 NaN NaN NaN NaN NaN NaN NaN 66.389 1 69.841 69.341 70.341 3.4516 0 0 0 0.53105 1 15178 15178 9.3831 0 1 + 30007 21499 19055 19066 34751 34751 0.0521608427989122 PFSQKELDPD 10 Unmodified _PFSQKELDPD_ 0 0 0 REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6 REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MSMS UPN48_class_I_Rep_2 6 588.2836303710938 2 588.282586 1174.55062 0.56675 0.00033341 0.63578 0.00037402 1.2025 0.00070743 588.2826220959103 53.951 0.21087 57.533 57.398 57.609 3.5817 21 15 2 0 0 0 0.55148 1 11379 11379 5.2969 0.96765 1 81515 + 30008 19266 19056 19067 34752 34752 -0.029674898357598067 PFSQKELDPD 10 Unmodified _PFSQKELDPD_ 0 0 0 REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6 REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MATCH UPN48_class_I_Rep_1 5 2 588.282586 1174.55062 0.44085 0.00025934 0.45236 0.00026612 0.89321 0.00052546 588.2829358968588 53.952 0.08279 57.466 57.393 57.476 3.5143 -0.033328 -0.00018519 NaN 5.2969 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 41862 + 30009 19266 19056 19067 -0.029674898357598067 PFSRARSG 8 Unmodified _PFSRARSG_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MSMS UPN48_class_I_Rep_1 5 439.2362365722656 2 439.235576 876.456599 NaN NaN NaN NaN NaN NaN NaN 94.311 1 97.932 97.432 98.432 3.6208 0 0 0 0.39996 1 22693 22693 7.9102 0 1 30010 1449 19057 19068 34753 34753 0.013428806432898455 PFSSGVGPRVE 11 Unmodified _PFSSGVGPRVE_ 0 0 0 REV__MER52A_dup205|chr3:17479757-17481470:+|1.166756520102404|0.0380781188654936|4.94|150.0|66|2|anti-sense REV__MER52A_dup205|chr3:17479757-17481470:+|1.166756520102404|0.0380781188654936|4.94|150.0|66|2|anti-sense MSMS UPN47_class_I_Rep_3 4 566.2933349609375 2 566.293288 1130.57202 NaN NaN NaN NaN NaN NaN NaN 28.788 1 32.122 31.622 32.622 3.3338 0 0 0 0.38417 1 4563 4563 1.0715 0.38109 1 + 30011 31416 19058 19069 34754 34754 0.011959399836314333 PFSSSFPITY 10 Unmodified _PFSSSFPITY_ 0 0 0 MLT1D-int_dup329|chr7:157194474-157195825:+|2.078859227093269|0.0976022122474673|4.41|151.0|85|3|anti-sense MLT1D-int_dup329|chr7:157194474-157195825:+|2.078859227093269|0.0976022122474673|4.41|151.0|85|3|anti-sense MLT1D-int_dup329|chr7:157194474-157195825:+|2.078859227093269|0.0976022122474673|4.41|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 573.2794799804688 2 573.279315 1144.54408 0.41896 0.00024018 -0.034195 -1.9604E-05 0.38476 0.00022058 573.2795194103155 71.131 2.2415 74.414 73.951 76.192 3.2828 640 202 5 0 0 0 0.54822 1 17244 17244 5.7319 0.43497 1 11714000 30012 16363 19059 19070 34755 34755 -0.022413829964762044 PFSSWNDY 8 Unmodified _PFSSWNDY_ 0 0 0 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 MSMS UPN47_class_I_Rep_1 2 508.2115478515625 2 508.211432 1014.40831 NaN NaN NaN NaN NaN NaN NaN 61.873 1 65.241 64.741 65.741 3.3681 0 0 0 0.4032 1 14537 14537 6.3541 0 1 30013 5241 19060 19071 34756 34756 -0.09831657787287895 PFSTSSPPPPY 11 Unmodified _PFSTSSPPPPY_ 0 0 0 ENST00000348370.8_1_15:59359032-59359191:+|nuORF ENST00000348370.8_1_15:59359032-59359191:+|nuORF ENST00000348370.8_1_15:59359032-59359191:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 588.7813720703125 2 588.782222 1175.54989 0.44211 0.00026031 0.089061 5.2438E-05 0.53117 0.00031274 588.7821774771948 38.599 1.0959 42.104 41.717 42.813 3.5048 243 95 4 0 0 0 0.65271 1 6592 6592 2.9952 2.9952 1 1057700 30014 6267 19061 19072 34757 34757 -0.030862844848115856 PFTFSHFDY 9 Unmodified _PFTFSHFDY_ 0 0 0 REV__L1PA7_dup6227|chr7:107532987-107537108:+|1.133626496963562|0.0189085727349058|5.91|150.0|194|2|anti-sense REV__L1PA7_dup6227|chr7:107532987-107537108:+|1.133626496963562|0.0189085727349058|5.91|150.0|194|2|anti-sense MSMS UPN47_class_I_Rep_1 2 580.75341796875 2 580.756007 1159.49746 NaN NaN NaN NaN NaN NaN NaN 23.062 1 26.766 26.266 27.266 3.7042 0 0 0 0.39428 1 2792 2792 2.0598 0.21551 1 + 30015 30148 19062 19073 34758 34758 -0.07590822827751253 PFTLSGHFPR 10 Unmodified _PFTLSGHFPR_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 579.8072509765625 2 579.806365 1157.59818 0.42641 0.00024724 -0.063855 -3.7024E-05 0.36256 0.00021021 579.8062955945655 40.177 1.5158 43.918 43.43 44.946 3.7413 387 154 3 0 0 0 0.54822 1 7444 7444 5.7319 0.43497 1 1148200 30016 6953 19063 19074 34759 34759 0.025682539457420717 PFTRLLKL 8 Unmodified _PFTRLLKL_ 0 0 0 REV__ENST00000595476.1_1_19:39869154-39871842:+|nuORF REV__ENST00000595476.1_1_19:39869154-39871842:+|nuORF MSMS UPN48_class_I_Rep_3 7 494.319091796875 2 494.32112 986.627687 NaN NaN NaN NaN NaN NaN NaN 64.791 1 68.299 67.799 68.799 3.5083 0 0 0 0.40604 1 14591 14591 2.5775 0 1 + 30017 20669 19064 19075 34760 34760 0.13383817961880595 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS UPN48_class_I_Rep_2 6 554.7767333984375 2 554.776742 1107.53893 0.48715 0.00027026 -0.22037 -0.00012226 0.26677 0.000148 554.7765155249605 71.136 1.0469 74.687 74.228 75.275 3.5505 307 112 4 0 0 0 2.4099E-39 7 16597 16463;16496;16527;16561;16597;16634;16673 234.68 152.79 1 1487000 30018 2046 19065 19076 34761;34762;34763;34764;34765;34766;34767 34765 -0.010536420684275072 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS UPN48_class_I_Rep_3 7 554.7767333984375 2 554.776742 1107.53893 0.45297 0.0002513 -0.21299 -0.00011816 0.23998 0.00013313 554.7765308526818 71.035 1.4367 74.553 74.125 75.561 3.5185 354 142 4 0 0 0 2.4099E-39 7 16473 16367;16401;16435;16473;16509;16550;16590 234.68 156.53 1 1089800 30019 2046 19065 19076 34768;34769;34770;34771;34772;34773;34774 34771 -0.010536420684275072 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 554.776742 1107.53893 0.53 0.00029403 -0.2949 -0.00016361 0.23509 0.00013042 554.776491303823 71.32 1.0911 74.786 74.331 75.422 3.466 0.11093 -5.9723E-05 NaN 234.68 282 104 4 NaN NaN NaN NaN 0 NaN NaN 0 1415000 30020 2046 19065 19076 -0.010536420684275072 PFVFSKKEK 9 Unmodified _PFVFSKKEK_ 0 0 0 REV__ENSG00000197410|ENST00000357232|DCHS2 REV__ENSG00000197410|ENST00000357232|DCHS2 MSMS UPN48_class_I_Rep_2 6 555.3193969726562 2 555.321317 1108.62808 NaN NaN NaN NaN NaN NaN NaN 96.03 1 99.81 99.31 100.31 3.7804 0 0 0 0.40038 1 22810 22810 0.6015 0.076735 1 + 30021 21081 19066 19077 34775 34775 0.07811192891085739 PFVHFCYC 8 Unmodified _PFVHFCYC_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|52|1|anti-sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|52|1|anti-sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_2 3 508.2112731933594 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 62.708 1 65.964 65.464 66.464 3.2558 0 0 0 0.40581 1 14827 14827 2.8892 0 1 30022 10158 19067 19078 34776 34776 -0.09744857943587704 PFVKLLMK 8 Unmodified _PFVKLLMK_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|182|3|anti-sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|182|3|anti-sense MSMS UPN48_class_I_Rep_1 5 488.3062744140625 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 61.623 1 65.091 64.591 65.591 3.4678 0 0 0 0.40625 1 13726 13726 2.3027 0 1 + 30023 24054 19068 19079 34777 34777 0.11037957341261517 PFVLMVAVF 9 Unmodified _PFVLMVAVF_ 0 0 0 REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2 REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2 MULTI-SECPEP UPN48_class_I_Rep_2 6 511.2895202636719 2 511.790807 1021.56706 0.32249 0.00016505 0.3739 0.00019136 0.69639 0.0003564 511.7910109614435 88.846 0.24415 92.584 92.4 92.645 3.7379 51 30 2 0 0 0 0.12422 1 21152 21152 2.3027 0 1 219630 + 30024 18634 19069 19080 34778 34778 0.057139645873007794 PFVPARWW 8 Unmodified _PFVPARWW_ 0 0 0 REV__AluY_dup96874|chr19:18277687-18277988:+|2.855335384521671|0.043496966746239|6.04|151.0|10|3|sense REV__AluY_dup96874|chr19:18277687-18277988:+|2.855335384521671|0.043496966746239|6.04|151.0|10|3|sense MSMS UPN48_class_I_Rep_1 5 529.7820434570312 2 529.782162 1057.54977 NaN NaN NaN NaN NaN NaN NaN 26.142 1 29.709 29.209 30.209 3.5667 0 0 0 0.40738 1 3162 3162 0.79363 0 1 + 30025 17242 19070 19081 34779 34779 0.023298050964967842 PFVPGHSL 8 Unmodified _PFVPGHSL_ 0 0 0 L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|83|1|anti-sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|83|1|anti-sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|83|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 427.3026428222656 2 427.231971 852.449388 0.042623 1.821E-05 0.044429 1.8981E-05 0.087051 3.7191E-05 427.2319312477901 63.013 0.67348 66.475 66.106 66.78 3.4625 75 46 2 0 0 0 0.72333 1 14141 14141 14.582 0 1 152990 30026 15170 19071 19082 34780 34780 0.017261480428601317 PFVPGHSL 8 Unmodified _PFVPGHSL_ 0 0 0 L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|83|1|anti-sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|83|1|anti-sense L1PB1_dup6404|chr8:47458393-47460379:-|3.371117407337258|0.0281310647663755|6.9|151.0|83|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 427.30267333984375 2 427.231971 852.449388 0.12971 5.5418E-05 0.26214 0.000112 0.39186 0.00016741 427.2320398109709 62.951 0.72388 66.425 65.984 66.708 3.4738 87 51 2 0 0 0 0.72333 1 14102 14102 20.871 0 1 192700 30027 15170 19071 19082 34781 34781 0.017261480428601317 PFVRPALY 8 Unmodified _PFVRPALY_ 0 0 0 REV__MLT1J_dup6295|chr6:156151825-156152152:-|1.0463514835517005|0.0152091746347981|6.1|145.0|17|1|anti-sense REV__MLT1J_dup6295|chr6:156151825-156152152:-|1.0463514835517005|0.0152091746347981|6.1|145.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.7770080566406 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 59.752 1 59.752 59.252 60.252 0 0 0 0 0.40581 1 13229 13229 2.8892 0 1 + 30028 31482 19072 19083 34782 34782 0.05622983002365345 PFVVNPPV 8 Unmodified _PFVVNPPV_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|256|1|anti-sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|256|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.2537841796875 2 434.749996 867.485439 0.11486 4.9934E-05 1.3126 0.00057067 1.4275 0.0006206 434.7521003795059 75.459 0.31459 75.459 75.243 75.558 0 41 29 2 0 0 0 0.72333 1 17541 17541 0.79363 0.10326 1 62418 + 30029 23733 19073 19084 34783 34783 0.046396052197110293 PFWCPMHI 8 Unmodified _PFWCPMHI_ 0 0 0 REV__L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|130|2|anti-sense REV__L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|130|2|anti-sense MSMS UPN47_class_I_Rep_1 2 515.7360229492188 2 515.735509 1029.45646 NaN NaN NaN NaN NaN NaN NaN 33.892 1 37.59 37.09 38.09 3.6983 0 0 0 0.40738 1 6027 6027 0.79363 0 1 + 30030 29855 19074 19085 34784 34784 -0.057085786725792786 PFWGFLFCST 10 Unmodified _PFWGFLFCST_ 0 0 0 L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|36|1|anti-sense L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|36|1|anti-sense L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|36|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.2794799804688 2 602.778428 1203.5423 0.45915 0.00027677 0.12753 7.6873E-05 0.58668 0.00035364 602.7788081157587 72.079 0.077179 75.552 75.531 75.608 3.4732 9 7 2 0 0 0 0.56281 1 16902 16902 1.8442 0 1 52372 30031 11200 19075 19086 34785 34785 -0.051327152860949354 PFWIFLTK 8 Unmodified _PFWIFLTK_ 0 0 0 MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|21|2|anti-sense MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|21|2|anti-sense MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.301513671875 2 526.302396 1050.59024 NaN NaN NaN NaN NaN NaN NaN 115.3 1 118.95 118.45 119.45 3.6433 0 0 0 0.40738 1 27429 27429 0.79363 0 1 30032 15975 19076 19087 34786 34786 0.06696726696259248 PFYHKDKR 8 Unmodified _PFYHKDKR_ 0 0 0 L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|41|3|sense L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|41|3|sense L1PA15_dup515|chr1:235816470-235817880:+|1.156892954855876|0.0407778083028335|4.83|151.0|41|3|sense MSMS UPN48_class_I_Rep_2 6 545.7916870117188 2 545.793258 1089.57196 NaN NaN NaN NaN NaN NaN NaN 23.001 1 26.644 26.144 27.144 3.6432 0 0 0 0.40738 1 2435 2435 0.79363 0.10326 1 30033 13950 19077 19088 34787 34787 0.030759847742729107 PFYIKLGW 8 Unmodified _PFYIKLGW_ 0 0 0 REV__MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|37|3|anti-sense REV__MER4A_dup657|chr14:91154206-91154660:-|1.3264783552140031|0.0112110231048437|6.89|150.0|37|3|anti-sense MSMS UPN47_class_I_Rep_1 2 512.2852783203125 2 512.286746 1022.55894 NaN NaN NaN NaN NaN NaN NaN 55.592 1 59.07 58.57 59.57 3.4785 0 0 0 0.40604 1 12630 12630 2.5775 0.27475 1 + 30034 31347 19078 19089 34788 34788 0.048561536621718915 PFYSFKENCM 10 Unmodified _PFYSFKENCM_ 0 0 0 REV__nc|ENSG00000121989|P27037-2|ACVR2A REV__nc|ENSG00000121989|P27037-2|ACVR2A MSMS UPN47_class_I_Rep_2 3 633.2720336914062 2 633.270109 1264.52567 NaN NaN NaN NaN NaN NaN NaN 42.526 1 45.887 45.387 46.387 3.3611 0 0 0 0.53105 1 8681 8681 1.1933 0.59184 1 + 30035 18738 19079 19090 34789 34789 -0.09601584234337679 PGAFIAFRDR 10 Unmodified _PGAFIAFRDR_ 0 0 0 REV__NTNG2|p.D226Rfs*141|1|0.24|ENSG00000196358|chr9:132198423-132198424|-/C|frameshift_variant REV__NTNG2|p.D226Rfs*141|1|0.24|ENSG00000196358|chr9:132198423-132198424|-/C|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 575.3118286132812 2 575.311815 1148.60908 0.36607 0.0002106 0.0080692 4.6423E-06 0.37414 0.00021525 575.3116977005935 50.294 0.78248 53.915 53.607 54.39 3.621 69 49 2 0 0 0 0.56281 1 10299 10299 1.8442 0 1 277290 + 30036 21030 19080 19091 34790 34790 0.04071656320047623 PGAGVRRVV 9 Unmodified _PGAGVRRVV_ 0 0 0 ENST00000478021.1_1_17:27071820-27071916:+|nuORF ENST00000478021.1_1_17:27071820-27071916:+|nuORF ENST00000478021.1_1_17:27071820-27071916:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 456.1603088378906 2 455.782693 909.550834 0.11614 5.2934E-05 -1.4028 -0.00063939 -1.2867 -0.00058646 455.7825183071904 57.654 0.044067 57.654 57.628 57.672 0 5 4 2 0 0 0 0.12235 1 12646 12646 4.756 1.8668 1 52608 30037 6977 19081 19092 34791 34791 0.09244019465415931 PGAKKGPPAPI 11 Unmodified _PGAKKGPPAPI_ 0 0 0 nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66 nc|ENSG00000166436|O15016-2|TRIM66 nc|ENSG00000166436|O15016-2|TRIM66 MSMS UPN47_class_I_Rep_3 4 516.8056640625 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 93.912 1 97.319 96.819 97.819 3.4068 0 0 0 0.38417 1 23392 23392 1.3295 0.5359 1 30038 4241 19082 19093 34792 34792 0.09822326093899392 PGAVTRCK 8 Unmodified _PGAVTRCK_ 0 0 0 REV__ENSG00000167851|ENST00000360141|CD300A REV__ENSG00000167851|ENST00000360141|CD300A MSMS UPN47_class_I_Rep_3 4 416.2281188964844 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 26.433 1 29.781 29.281 30.281 3.3478 0 0 0 0.40738 1 3864 3864 0.79363 0 1 + 30039 20241 19083 19094 34793 34793 0.021253065396763304 PGDLRFRIK 9 Unmodified _PGDLRFRIK_ 0 0 0 ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 MSMS UPN46_class_I_Rep_3 1 551.3280639648438 2 551.330008 1100.64546 NaN NaN NaN NaN NaN NaN NaN 13.554 1 13.554 13.054 14.054 0 0 0 0 0.4007 1 412 412 0.52476 0.52476 1 30040 1353 19084 19095 34794 34794 0.09916533216733114 PGDWTDWN 8 Unmodified _PGDWTDWN_ 0 0 0 REV__ENSG00000129347|ENST00000312962|KRI1 REV__ENSG00000129347|ENST00000312962|KRI1 MSMS UPN46_class_I_Rep_3 1 495.7027282714844 2 495.701232 989.38791 NaN NaN NaN NaN NaN NaN NaN 73.542 1 73.542 73.042 74.042 0 0 0 0 0.40604 1 17050 17050 2.5775 0.27475 1 + 30041 18921 19085 19096 34795 34795 -0.10720828447108488 PGEECCSEWDC 11 Unmodified _PGEECCSEWDC_ 0 0 0 nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18;ENSG00000186891|ENST00000379268|TNFRSF18;nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18 nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18 nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18 MSMS UPN48_class_I_Rep_2 6 629.196044921875 2 629.196481 1256.37841 NaN NaN NaN NaN NaN NaN NaN 115.33 1 118.99 118.49 119.49 3.6616 0 0 0 0.38417 1 27599 27599 0 0 1 30042 5171 19086 19097 34796 34796 -0.23952468901461543 PGEELRLLAY 10 Unmodified _PGEELRLLAY_ 0 0 0 REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4 REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4 MULTI-MSMS UPN48_class_I_Rep_1 5 580.8193969726562 2 580.819138 1159.62372 0.50247 0.00029184 -0.030742 -1.7855E-05 0.47173 0.00027399 580.8190647596333 57.154 0.91819 60.648 60.211 61.129 3.4942 226 78 4 0 0 0 0.4965 1 12415 12415 12.241 0 1 1149000 + 30043 18792 19087 19098 34797 34797 0.05029683677526009 PGEKEDKF 8 Unmodified _PGEKEDKF_ 0 0 0 REV__ENST00000477947.1_1_12:46287367-46287505:+|nuORF REV__ENST00000477947.1_1_12:46287367-46287505:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 475.2345886230469 2 475.234907 948.455261 0.19495 9.2648E-05 -0.42183 -0.00020047 -0.22687 -0.00010782 475.23461948536493 58.015 0.68851 61.307 61.008 61.696 3.2912 89 49 2 0 0 0 0.82752 1 13447 13447 12.532 1.7076 1 226190 + 30044 22548 19088 19099 34798 34798 -0.021027982361374598 PGEKEDKF 8 Unmodified _PGEKEDKF_ 0 0 0 REV__ENST00000477947.1_1_12:46287367-46287505:+|nuORF REV__ENST00000477947.1_1_12:46287367-46287505:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 475.23455810546875 2 475.234907 948.455261 -0.067142 -3.1908E-05 0.0010318 4.9033E-07 -0.066111 -3.1418E-05 475.2348612248724 58.154 0.79835 61.321 60.931 61.729 3.1666 90 53 2 0 0 0 0.82752 2 13448 13448;13499 18.135 2.2878 1 234060 + 30045 22548 19088 19099 34799;34800 34799 -0.021027982361374598 PGENWDLI 8 Unmodified _PGENWDLI_ 0 0 0 MLT1J-int_dup848|chr9:15476767-15477137:+|1.680376473225438|0.1120666631344428|3.91|151.0|14|3|sense MLT1J-int_dup848|chr9:15476767-15477137:+|1.680376473225438|0.1120666631344428|3.91|151.0|14|3|sense MLT1J-int_dup848|chr9:15476767-15477137:+|1.680376473225438|0.1120666631344428|3.91|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 471.7960205078125 2 472.229625 942.444697 NaN NaN NaN NaN NaN NaN NaN 62.879 1 66.341 65.841 66.841 3.4625 0 0 0 0.40581 1 14109 14109 2.8892 0.58649 1 30046 16468 19089 19100 34801 34801 -0.028827808905589336 PGEVVVHLL 9 Unmodified _PGEVVVHLL_ 0 0 0 REV__MLT1H_dup4262|chr7:76343559-76343821:+|1.231125438536271|0.0163553293116872|6.23|150.0|18|3|anti-sense REV__MLT1H_dup4262|chr7:76343559-76343821:+|1.231125438536271|0.0163553293116872|6.23|150.0|18|3|anti-sense MSMS UPN48_class_I_Rep_3 7 481.3377380371094 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 112.01 1 115.67 115.17 116.17 3.6614 0 0 0 0.40038 1 26601 26601 0.6015 0 1 + 30047 31744 19090 19101 34802 34802 0.07734948311247081 PGGGSHGG 8 Unmodified _PGGGSHGG_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MULTI-MSMS UPN46_class_I_Rep_3 1 625.751708984375 1 625.268864 624.261587 0.60765 0.00037994 3.7595 0.0023507 4.3671 0.0027306 625.2727848456781 60.6 0.49638 60.6 60.424 60.92 0 101 61 3 0 0 0 0.82752 1 13412 13412 0 0 1 365580 30048 4818 19091 19102 34803 34803 -0.06557290161697438 PGGIEHMVWI 10 Unmodified _PGGIEHMVWI_ 0 0 0 REV__nc|ENSG00000109743|Q10588-2|BST1 REV__nc|ENSG00000109743|Q10588-2|BST1 MSMS UPN48_class_I_Rep_1 5 569.791015625 2 569.789327 1137.5641 NaN NaN NaN NaN NaN NaN NaN 46.702 1 50.221 49.721 50.721 3.5192 0 0 0 0.53105 1 9148 9148 3.9444 1.0552 1 + 30049 18412 19092 19103 34804 34804 0.0008208946248942084 PGGKARRT 8 Unmodified _PGGKARRT_ 0 0 0 REV__ENSG00000172716|ENST00000685675|SLFN11 REV__ENSG00000172716|ENST00000685675|SLFN11 MULTI-MSMS UPN48_class_I_Rep_1 5 421.7511291503906 2 421.751393 841.488233 -0.093969 -3.9631E-05 0.0099932 4.2147E-06 -0.083975 -3.5417E-05 421.75132070878584 80.805 0.62571 84.368 84.129 84.755 3.5624 175 82 3 0 0 0 0.82752 1 19333 19333 4.756 2.4533 1 1155100 + 30050 20456 19093 19104 34805 34805 0.06114873397223164 PGHLQEGF 8 Unmodified _PGHLQEGF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MSMS UPN47_class_I_Rep_1 2 442.7164306640625 2 442.716685 883.418816 NaN NaN NaN NaN NaN NaN NaN 32.067 1 35.78 35.28 36.28 3.7131 0 0 0 0.35163 1 5469 5469 21.747 9.2151 1 30051 3267 19094 19105 34806 34806 -0.027556303421874873 PGHLQEGF 8 Unmodified _PGHLQEGF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MSMS UPN47_class_I_Rep_2 3 442.71710205078125 2 442.716685 883.418816 NaN NaN NaN NaN NaN NaN NaN 32.135 1 35.605 35.105 36.105 3.4691 0 0 0 0.4044 1 5529 5529 4.756 0 1 30052 3267 19094 19105 34807 34807 -0.027556303421874873 PGHPFRRT 8 Unmodified _PGHPFRRT_ 0 0 0 nc|ENSG00000162585|Q6NZ36-6|FAAP20 REV__L1P3_dup2037|chrX:64944372-64946551:-|1.3137530075034096|0.0295934710531302|5.47|151.0|20|2|sense REV__L1P3_dup2037|chrX:64944372-64946551:-|1.3137530075034096|0.0295934710531302|5.47|151.0|20|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 484.8401794433594 2 484.264668 966.514782 0.066114 3.2017E-05 1.2421 0.00060151 1.3082 0.00063353 484.26631685854665 32.21 0.099762 32.21 32.165 32.265 0 10 7 2 0 0 0 0.72333 1 5497 5497 0.79363 0 1 48159 30053 16732 19095 19106 34808 34808 0.030185622885710472 PGHSETPS 8 Unmodified _PGHSETPS_ 0 0 0 REV__ENST00000391826.6_1_19:50399246-50400097:-|nuORF REV__ENST00000391826.6_1_19:50399246-50400097:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.18231201171875 2 406.182675 810.350796 -0.99939 -0.00040593 0.18011 7.3156E-05 -0.81928 -0.00033278 406.1826665580351 17.183 0.63897 20.57 20.275 20.914 3.387 98 72 2 0 0 0 0.82752 1 1279 1279 0.69038 0 1 38007 + 30054 22085 19096 19107 34809 34809 -0.061964999928363795 PGIFFVVTME 10 Unmodified _PGIFFVVTME_ 0 0 0 nc|ENSG00000005801|O14628-8|ZNF195 nc|ENSG00000005801|O14628-8|ZNF195 nc|ENSG00000005801|O14628-8|ZNF195 MSMS UPN48_class_I_Rep_1 5 570.2952270507812 2 570.293911 1138.57327 NaN NaN NaN NaN NaN NaN NaN 56.789 1 60.291 59.791 60.791 3.5014 0 0 0 0.53105 1 12249 12249 4.3292 1.8308 1 30055 16615 19097 19108 34810 34810 0.009524380281618505 PGIPQNIVL 9 Unmodified _PGIPQNIVL_ 0 0 0 L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|59|2|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|59|2|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|59|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 475.7870178222656 2 475.78711 949.559667 0.063154 3.0048E-05 0.11012 5.2395E-05 0.17328 8.2443E-05 475.78707249551616 79.425 0.9068 82.72 82.309 83.216 3.295 176 85 3 0 0 0 0.41259 1 19944 19944 7.2892 0.56607 1 324170 30056 11444 19098 19109 34811 34811 0.08286948311229025 PGKAGAVERL 10 Unmodified _PGKAGAVERL_ 0 0 0 REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|52|3|sense REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|52|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.7950439453125 2 499.293091 996.571629 0.19294 9.6334E-05 -0.018538 -9.2561E-06 0.1744 8.7078E-05 499.2929576056504 89.37 0.13218 92.996 92.943 93.076 3.6255 19 14 2 0 0 0 0.56155 1 21458 21458 2.7352 0.89096 1 53910 + 30057 23594 19099 19110 34812 34812 0.07320565054419603 PGKAGAVERL 10 Unmodified _PGKAGAVERL_ 0 0 0 REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|52|3|sense REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|52|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 499.293091 996.571629 0.19294 9.6334E-05 -0.018538 -9.2561E-06 0.1744 8.7078E-05 499.2929576056504 89.37 0.13218 92.996 92.943 93.076 3.6255 0.052396 -0.00013095 NaN 2.7352 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 53910 + 30058 23594 19099 19110 0.07320565054419603 PGKAGAVERL 10 Unmodified _PGKAGAVERL_ 0 0 0 REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|52|3|sense REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|52|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 499.293091 996.571629 0.28796 0.00014378 0.141 7.0403E-05 0.42896 0.00021418 499.2932428569834 89.153 0.21011 92.891 92.829 93.039 3.7379 -0.052396 2.8368E-05 NaN 2.7352 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 106730 + 30059 23594 19099 19110 0.07320565054419603 PGKGPGRR 8 Unmodified _PGKGPGRR_ 0 0 0 REV__ENSG00000113905|ENST00000232003|HRG REV__ENSG00000113905|ENST00000232003|HRG MULTI-MSMS UPN46_class_I_Rep_3 1 412.7459716796875 2 412.746111 823.477669 0.053777 2.2196E-05 -0.0032238 -1.3306E-06 0.050553 2.0866E-05 412.7460394093092 79.228 1.0051 79.228 78.742 79.747 0 228 98 3 0 0 0 0.82752 2 18522 18522;18565 5.2307 0 1 1740900 + 30060 18518 19100 19111 34813;34814 34813 0.058868907427950035 PGKGRTRA 8 Unmodified _PGKGRTRA_ 0 0 0 nc|ENSG00000110400|Q15223-3|NECTIN1 nc|ENSG00000110400|Q15223-3|NECTIN1 nc|ENSG00000110400|Q15223-3|NECTIN1 MULTI-SECPEP UPN48_class_I_Rep_3 7 421.75128173828125 2 421.751393 841.488233 0.14471 6.1033E-05 -0.24418 -0.00010298 -0.099468 -4.1951E-05 421.7512107607285 80.717 0.47466 84.381 84.14 84.615 3.6635 110 61 3 0 0 0 0.72333 1 19117 19117 4.756 4.756 1 948360 30061 16659 19101 19112 34815 34815 0.06114873397223164 PGKKKKKKA 9 Unmodified _PGKKKKKKA_ 0 0 0 L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|38|2|sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|38|2|sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.85333251953125 2 506.853119 1011.69168 0.30964 0.00015694 0.0058349 2.9574E-06 0.31547 0.0001599 506.8530157830152 108.31 0.54762 111.98 111.72 112.27 3.6746 214 61 4 0 0 0 0.48846 1 25706 25706 1.8442 1.0506 1 61188000 30062 14181 19102 19113 34816 34816 0.18630598118829766 PGKKVEPVPVT 11 Unmodified _PGKKVEPVPVT_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MSMS UPN47_class_I_Rep_1 2 575.8430786132812 2 575.845156 1149.67576 NaN NaN NaN NaN NaN NaN NaN 83.452 1 86.991 86.491 87.491 3.5386 0 0 0 0.38417 1 20871 20871 2.7352 1.0826 1 30063 2552 19103 19114 34817 34817 0.10690847091268552 PGKLITSFR 9 Unmodified _PGKLITSFR_ 0 0 0 REV__Tigger1_dup1114|chr2:39037751-39038453:+|1.131320366539487|0.0426683556738392|4.73|151.0|45|3|anti-sense REV__Tigger1_dup1114|chr2:39037751-39038453:+|1.131320366539487|0.0426683556738392|4.73|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 509.8036193847656 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 75.63 1 79.129 78.629 79.629 3.4996 0 0 0 0.39518 1 17930 17930 1.8442 0 1 + 30064 32354 19104 19115 34818 34818 0.08902039576844345 PGKLLLLD 8 Unmodified _PGKLLLLD_ 0 0 0 REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 435.2510986328125 2 434.778754 867.542954 -0.40759 -0.00017721 1.0893 0.00047359 0.68168 0.00029638 434.7799773210697 70.706 0.12408 73.917 73.842 73.966 3.2113 11 9 2 0 0 0 0.72333 1 17295 17295 2.3027 0 1 22794 + 30065 31073 19105 19116 34819 34819 0.10388447425293634 PGKLLLLD 8 Unmodified _PGKLLLLD_ 0 0 0 REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 435.2512512207031 2 434.778754 867.542954 0.092438 4.019E-05 1.6157 0.00070248 1.7081 0.00074267 434.77981378506644 71.215 0.28181 74.765 74.629 74.911 3.5505 31 28 2 0 0 0 0.72333 1 16611 16611 2.3027 0 1 90072 + 30066 31073 19105 19116 34820 34820 0.10388447425293634 PGKLLLLD 8 Unmodified _PGKLLLLD_ 0 0 0 REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.778754 867.542954 0.094581 4.1122E-05 2.7614 0.0012006 2.856 0.0012417 434.7799024314566 70.255 0.21191 73.791 73.646 73.858 3.5359 0.022766 -2.3213E-05 NaN 2.3027 23 19 2 NaN NaN NaN NaN 0 NaN NaN 0 61154 + 30067 31073 19105 19116 0.10388447425293634 PGKLLLLD 8 Unmodified _PGKLLLLD_ 0 0 0 REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense REV__MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|100|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 434.778754 867.542954 0.19577 8.5118E-05 2.8211 0.0012265 3.0168 0.0013117 434.7798542469358 70.084 0.58641 73.596 73.257 73.844 3.5128 -0.17163 2.8648E-05 NaN 2.3027 59 47 2 NaN NaN NaN NaN 0 NaN NaN 0 84138 + 30068 31073 19105 19116 0.10388447425293634 PGKLQKQR 8 Unmodified _PGKLQKQR_ 0 0 0 ENSG00000183186|ENST00000332235|C2CD4C ENSG00000183186|ENST00000332235|C2CD4C ENSG00000183186|ENST00000332235|C2CD4C MULTI-MSMS UPN48_class_I_Rep_1 5 477.795654296875 2 477.795801 953.577048 0.10666 5.0961E-05 0.53321 0.00025477 0.63987 0.00030573 477.7957917608018 107.54 0.12897 111.17 111.12 111.25 3.6313 23 15 2 0 0 0 0.82752 1 25924 25924 16.942 0.79319 1 4847600 30069 4987 19106 19117 34821 34821 0.09840288636894456 PGKLQKQR 8 Unmodified _PGKLQKQR_ 0 0 0 ENSG00000183186|ENST00000332235|C2CD4C ENSG00000183186|ENST00000332235|C2CD4C ENSG00000183186|ENST00000332235|C2CD4C MULTI-MATCH UPN47_class_I_Rep_2 3 2 477.795801 953.577048 0.33843 0.0001617 0.27342 0.00013064 0.61186 0.00029234 477.79551980213165 107.64 0.032585 111.17 111.15 111.18 3.5345 7.8497E-05 -0.00021834 NaN 16.942 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 750590 30070 4987 19106 19117 0.09840288636894456 PGKLRMVRPVR 11 Unmodified _PGKLRMVRPVR_ 0 0 0 REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|115|3|anti-sense REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|115|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.9398498535156 3 436.939686 1307.79723 0.21712 9.4869E-05 0.40646 0.0001776 0.62358 0.00027247 436.9397708144918 54.861 1.1391 58.426 57.578 58.717 3.5649 117 69 2 0 0 0 0.68024 1 11717 11717 0.50596 0.50596 1 166170 + 30071 32655 19107 19118 34822 34822 0.15564190972781944 PGKLRMVRPVR 11 Unmodified _PGKLRMVRPVR_ 0 0 0 REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|115|3|anti-sense REV__Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|115|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.939686 1307.79723 0.0080529 3.5186E-06 0.59333 0.00025925 0.60138 0.00026277 436.93982319664696 54.791 0.62935 58.36 58.078 58.708 3.5694 -0.032774 0.00016924 NaN 0.50596 63 40 2 NaN NaN NaN NaN 0 NaN NaN 0 172320 + 30072 32655 19107 19118 0.15564190972781944 PGKLSLMGK 9 Unmodified _PGKLSLMGK_ 0 0 0 MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|4|1|sense MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|4|1|sense MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 465.7777099609375 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 72.867 1 76.432 75.932 76.932 3.5645 0 0 0 0.39518 1 17081 17081 1.8442 1.1539 1 30073 16037 19108 19119 34823 34823 0.06923605922122533 PGKNQKSEY 9 Unmodified _PGKNQKSEY_ 0 0 0 ENST00000491892.1_1_22:20082246-20094325:+|nuORF;ENST00000485802.1_1_22:20094124-20096613:+|nuORF;ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;nc|ENSG00000128191|Q8WYQ5-3|DGCR8;ENSG00000128191|ENST00000351989|DGCR8 ENST00000491892.1_1_22:20082246-20094325:+|nuORF ENST00000491892.1_1_22:20082246-20094325:+|nuORF MSMS UPN47_class_I_Rep_2 3 525.7633056640625 2 525.764363 1049.51417 NaN NaN NaN NaN NaN NaN NaN 31.803 1 35.272 34.772 35.772 3.4691 0 0 0 0.38299 1 5429 5429 4.756 0.42677 1 30074 2584 19109 19120 34824 34824 -0.008603219418091612 PGKNQRAV 8 Unmodified _PGKNQRAV_ 0 0 0 nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY nc|ENSG00000119411|Q5W0U4-2|BSPRY nc|ENSG00000119411|Q5W0U4-2|BSPRY MULTI-MSMS UPN46_class_I_Rep_3 1 435.2508850097656 2 435.251226 868.487899 0.11014 4.7938E-05 -0.32721 -0.00014242 -0.21707 -9.4482E-05 435.25098113718747 73.499 0.57475 73.499 73.097 73.672 0 119 60 3 0 0 0 0.82752 1 17003 17003 4.756 0 1 261130 30075 2281 19110 19121 34825 34825 0.048394536773685104 PGKNQRAV 8 Unmodified _PGKNQRAV_ 0 0 0 nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY nc|ENSG00000119411|Q5W0U4-2|BSPRY nc|ENSG00000119411|Q5W0U4-2|BSPRY MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 435.251226 868.487899 0.0017438 7.5899E-07 -0.61588 -0.00026806 -0.61413 -0.0002673 435.2508485621185 70.19 1.2987 73.561 72.939 74.238 3.3713 0.0068845 1.5998E-06 NaN 4.756 199 121 2 NaN NaN NaN NaN 0 NaN NaN 0 285710 30076 2281 19110 19121 0.048394536773685104 PGKNQRAV 8 Unmodified _PGKNQRAV_ 0 0 0 nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY nc|ENSG00000119411|Q5W0U4-2|BSPRY nc|ENSG00000119411|Q5W0U4-2|BSPRY MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 435.251226 868.487899 0.19703 8.5758E-05 -0.96498 -0.00042001 -0.76794 -0.00033425 435.2505405237275 70.09 1.2353 73.603 72.856 74.091 3.5128 0.04885 -0.00030229 NaN 4.756 210 107 3 NaN NaN NaN NaN 0 NaN NaN 0 230540 30077 2281 19110 19121 0.048394536773685104 PGKPKGKR 8 Unmodified _PGKPKGKR_ 0 0 0 nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF;ENSG00000109685|ENST00000508803|NSD2 nc|ENSG00000109685|O96028-4|NSD2 nc|ENSG00000109685|O96028-4|NSD2 MULTI-MSMS UPN48_class_I_Rep_2 6 434.7797546386719 2 434.279786 866.54502 0.18269 7.9341E-05 2.8963 0.0012578 3.079 0.0013371 434.2826269545729 53.289 3.6731 56.899 56.177 59.85 3.6098 543 241 3 0 0 0 0.82752 1 11869 11869 2.5775 0 1 1313100 30078 1903 19111 19122 34826 34826 0.10640920953744626 PGKRATRG 8 Unmodified _PGKRATRG_ 0 0 0 REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 421.7513122558594 2 421.751393 841.488233 0.14723 6.2095E-05 -0.53515 -0.0002257 -0.38792 -0.00016361 421.7510821736457 79.403 0.57722 83.045 82.824 83.402 3.6423 97 72 2 0 0 0 0.82752 1 18849 18849 3.9444 0 1 177870 + 30079 22314 19112 19123 34827 34827 0.06114873397223164 PGKRGRPG 8 Unmodified _PGKRGRPG_ 0 0 0 nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1 nc|ENSG00000060718|P12107-4|COL11A1 nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN46_class_I_Rep_3 1 412.74603271484375 2 412.746111 823.477669 0.053777 2.2196E-05 -0.0032238 -1.3306E-06 0.050553 2.0866E-05 412.7460394093092 79.228 1.0051 79.228 78.742 79.747 0 228 98 3 0 0 0 0.82752 1 18633 18633 8.5933 0 1 1740900 30080 969 19113 19124 34828 34828 0.05886890742806372 PGKRGRPG 8 Unmodified _PGKRGRPG_ 0 0 0 nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1 nc|ENSG00000060718|P12107-4|COL11A1 nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN47_class_I_Rep_1 2 412.7461242675781 2 412.746111 823.477669 -0.014206 -5.8635E-06 0.090602 3.7396E-05 0.076396 3.1532E-05 412.74603829242363 75.995 0.80296 79.398 78.949 79.752 3.4034 177 75 3 0 0 0 0.82752 2 18745 18745;18781 2.3027 0 1 577830 30081 969 19113 19124 34829;34830 34829 0.05886890742806372 PGKRGRPG 8 Unmodified _PGKRGRPG_ 0 0 0 nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1 nc|ENSG00000060718|P12107-4|COL11A1 nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN48_class_I_Rep_1 5 412.7460632324219 2 412.746111 823.477669 -0.10745 -4.4348E-05 0.33656 0.00013891 0.22911 9.4566E-05 412.74612229208935 75.811 0.86156 79.311 78.976 79.837 3.4996 197 92 3 0 0 0 0.82752 1 18000 18000 2.3027 0 1 743580 30082 969 19113 19124 34831 34831 0.05886890742806372 PGKRRGVT 8 Unmodified _PGKRRGVT_ 0 0 0 ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.76678466796875 2 435.767043 869.519533 0.058511 2.5497E-05 -0.12143 -5.2915E-05 -0.062918 -2.7418E-05 435.7668638730344 79.324 0.29836 82.769 82.726 83.024 3.4456 49 31 2 0 0 0 0.82752 1 19766 19766 2.0598 0 1 141640 30083 7523 19114 19125 34832 34832 0.07955446431321889 PGKRRGVT 8 Unmodified _PGKRRGVT_ 0 0 0 ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF MSMS UPN47_class_I_Rep_1 2 435.7668151855469 2 435.767043 869.519533 NaN NaN NaN NaN NaN NaN NaN 79.219 1 82.665 82.165 83.165 3.4456 0 0 0 0.40643 1 19730 19730 2.0598 0 1 30084 7523 19114 19125 34833 34833 0.07955446431321889 PGKRRGVT 8 Unmodified _PGKRRGVT_ 0 0 0 ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.76702880859375 2 435.767043 869.519533 -0.30855 -0.00013445 0.32409 0.00014123 0.015542 6.7728E-06 435.76710452042937 79.117 1.0392 82.473 82.097 83.136 3.3554 147 105 2 0 0 0 0.82752 1 19636 19636 4.3292 0 1 321430 30085 7523 19114 19125 34834 34834 0.07955446431321889 PGKRTRGGRKR 11 Unmodified _PGKRTRGGRKR_ 0 0 0 REV__nc|ENSG00000115207|Q8WUA4-2|GTF3C2 REV__nc|ENSG00000115207|Q8WUA4-2|GTF3C2 MULTI-MSMS UPN46_class_I_Rep_3 1 423.5976867675781 3 423.597199 1267.76977 0.10887 4.6119E-05 1.1914 0.00050466 1.3002 0.00055078 423.5976270397692 102.4 0.1273 102.4 102.38 102.5 0 20 13 3 0 0 0 0.65559 1 24987 24987 1.1098 0.096179 1 675280 + 30086 18547 19115 19126 34835 34835 0.14659423756779688 PGKRVICHVC 10 Unmodified _PGKRVICHVC_ 0 0 0 REV__MLT1J_dup608|chr1:107577417-107577894:+|1.361131455901736|0.2939015139367163|2.21|151.0|17|1|anti-sense REV__MLT1J_dup608|chr1:107577417-107577894:+|1.361131455901736|0.2939015139367163|2.21|151.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 555.91552734375 2 556.296796 1110.57904 NaN NaN NaN NaN NaN NaN NaN 99.615 1 99.615 99.115 100.11 0 0 0 0 0.53105 1 24274 24274 0.40072 0 1 + 30087 31781 19116 19127 34836 34836 0.028172580588488927 PGKRWRFLRTV 11 Unmodified _PGKRWRFLRTV_ 0 0 0 MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|26|3|anti-sense MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|26|3|anti-sense MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_2 6 472.28399658203125 3 472.6176 1414.83097 NaN NaN NaN NaN NaN NaN NaN 92.513 1 96.276 95.776 96.776 3.7629 0 0 0 0.38417 1 22014 22014 0.45452 0 1 30088 15976 19117 19128 34837 34837 0.140149357361679 PGKVAGTQR 9 Unmodified _PGKVAGTQR_ 0 0 0 THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 457.2641906738281 2 457.264333 912.514114 0.18022 8.2406E-05 0.069386 3.1728E-05 0.2496 0.00011413 457.26410732522254 77.42 0.21265 77.42 77.346 77.559 0 39 20 3 0 0 0 0.12477 1 18131 18131 0.40072 0 1 154990 30089 32927 19118 19129 34838 34838 0.05435722848858404 PGKVAGTQR 9 Unmodified _PGKVAGTQR_ 0 0 0 THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2641296386719 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.49026 1 18092 18092 1.6526 0 1 270870 30090 32927 19118 19129 34839 34839 0.05435722848858404 PGKVAGTQR 9 Unmodified _PGKVAGTQR_ 0 0 0 THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2642517089844 2 457.264333 912.514114 -0.15313 -7.0019E-05 0.21208 9.6978E-05 0.058957 2.6959E-05 457.2643294104242 73.093 1.9641 76.32 75.19 77.155 3.2271 308 175 3 0 0 0 0.47493 1 18215 18215 3.2813 0 1 325030 30091 32927 19118 19129 34840 34840 0.05435722848858404 PGKVAGTQR 9 Unmodified _PGKVAGTQR_ 0 0 0 THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2647399902344 2 457.264333 912.514114 -0.15104 -6.9064E-05 0.46525 0.00021274 0.31421 0.00014368 457.2644930406652 74.28 1.1927 77.516 77.164 78.356 3.2363 174 130 2 0 0 0 0.47493 1 18458 18458 3.2813 0 1 164670 30092 32927 19118 19129 34841 34841 0.05435722848858404 PGKVAGTQR 9 Unmodified _PGKVAGTQR_ 0 0 0 THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense THE1B-int_dup343|chr2:24548444-24549575:-|1.642259804809643|0.0279996719602157|5.87|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.2642822265625 2 457.264333 912.514114 0.073621 3.3664E-05 0.075283 3.4424E-05 0.1489 6.8088E-05 457.264245092214 72.821 1.6651 76.294 75.47 77.135 3.4732 273 145 3 0 0 0 0.47493 2 16990 16990;17066 3.2813 0 1 285570 30093 32927 19118 19129 34842;34843 34842 0.05435722848858404 PGLAFLPYLK 10 Unmodified _PGLAFLPYLK_ 0 0 0 L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|22|2|sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|22|2|sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 559.8323364257812 2 559.83406 1117.65357 NaN NaN NaN NaN NaN NaN NaN 47.587 1 51.108 50.608 51.608 3.5219 0 0 0 0.53105 1 9420 9420 4.3292 0.73274 1 30094 13106 19119 19130 34844 34844 0.09944667413469688 PGLAFLPYLK 10 Unmodified _PGLAFLPYLK_ 0 0 0 L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|22|2|sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|22|2|sense L1MEc_dup4366|chr3:190638896-190640384:-|2.8769636967754035|0.1887189222046661|3.93|151.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 559.8318481445312 2 559.83406 1117.65357 NaN NaN NaN NaN NaN NaN NaN 47.439 1 51.175 50.675 51.675 3.7361 0 0 0 0.53105 1 9369 9369 4.3292 0.38484 1 30095 13106 19119 19130 34845 34845 0.09944667413469688 PGLKLRALK 9 Unmodified _PGLKLRALK_ 0 0 0 REV__PABL_A-int_dup387|chr19:21151432-21152853:-|1.1727170658243744|0.0279644511333435|5.39|151.0|61|1|anti-sense REV__PABL_A-int_dup387|chr19:21151432-21152853:-|1.1727170658243744|0.0279644511333435|5.39|151.0|61|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.3402099609375 2 498.339844 994.665135 0.14948 7.4492E-05 0.38445 0.00019159 0.53393 0.00026608 498.3400750822473 34.609 0.04343 34.609 34.586 34.629 0 4 2 2 0 0 0 0.50015 1 6205 6205 0.6015 0 1 316210 + 30096 32153 19120 19131 34846 34846 0.16758909227507957 PGNDDNNLNSI 11 Unmodified _PGNDDNNLNSI_ 0 0 0 nc|ENSG00000135749|A6NKB5-3|PCNX2;ENSG00000135749|ENST00000258229|PCNX2 nc|ENSG00000135749|A6NKB5-3|PCNX2 nc|ENSG00000135749|A6NKB5-3|PCNX2 MSMS UPN48_class_I_Rep_3 7 586.764892578125 2 586.762549 1171.51054 NaN NaN NaN NaN NaN NaN NaN 21.666 1 25.38 24.88 25.88 3.7144 0 0 0 0.38417 1 2077 2077 1.1933 0.39971 1 30097 2926 19121 19132 34847 34847 -0.06835036506345205 PGNKVTLT 8 Unmodified _PGNKVTLT_ 0 0 0 ENSG00000121410|ENST00000263100|A1BG;ENST00000599109.5_1_19:58861526-58863787:-|nuORF;nc|ENSG00000121410|P04217-2|A1BG ENSG00000121410|ENST00000263100|A1BG ENSG00000121410|ENST00000263100|A1BG MULTI-SECPEP UPN48_class_I_Rep_1 5 415.2445373535156 2 415.242535 828.470518 -0.13834 -5.7446E-05 2.3806 0.00098854 2.2423 0.0009311 415.24418155022863 96.456 0.20016 100.07 99.963 100.16 3.6124 33 23 3 0 0 0 0.72333 1 23234 23234 2.0598 1.2661 1 147510 30098 2357 19122 19133 34848 34848 0.049421133517171256 PGNKVTLT 8 Unmodified _PGNKVTLT_ 0 0 0 ENSG00000121410|ENST00000263100|A1BG;ENST00000599109.5_1_19:58861526-58863787:-|nuORF;nc|ENSG00000121410|P04217-2|A1BG ENSG00000121410|ENST00000263100|A1BG ENSG00000121410|ENST00000263100|A1BG MULTI-MATCH UPN48_class_I_Rep_2 6 2 415.242535 828.470518 0.082141 3.4108E-05 3.8382 0.0015938 3.9203 0.0016279 415.2444196572988 96.302 0.20915 100.08 99.909 100.12 3.7804 -0.075833 0.0008408 NaN 2.0598 33 27 2 NaN NaN NaN NaN 0 NaN NaN 0 172530 30099 2357 19122 19133 0.049421133517171256 PGNKVTLT 8 Unmodified _PGNKVTLT_ 0 0 0 ENSG00000121410|ENST00000263100|A1BG;ENST00000599109.5_1_19:58861526-58863787:-|nuORF;nc|ENSG00000121410|P04217-2|A1BG ENSG00000121410|ENST00000263100|A1BG ENSG00000121410|ENST00000263100|A1BG MULTI-MATCH UPN48_class_I_Rep_3 7 2 415.242535 828.470518 0.097558 4.051E-05 -0.32659 -0.00013561 -0.22903 -9.5102E-05 415.24487858136 96.167 0.021118 100.08 100.06 100.08 3.9084 -0.081996 -0.002618 NaN 2.0598 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 25319 30100 2357 19122 19133 0.049421133517171256 PGNPKLPH 8 Unmodified _PGNPKLPH_ 0 0 0 REV__THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense REV__THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense MSMS UPN47_class_I_Rep_3 4 430.2559814453125 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 109.42 1 112.95 112.45 113.45 3.5347 0 0 0 0.40625 1 26883 26883 2.3027 0 1 + 30101 32271 19123 19134 34849 34849 0.03628952791427764 PGNVKLSALE 10 Unmodified _PGNVKLSALE_ 0 0 0 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 MSMS UPN48_class_I_Rep_2 6 514.2946166992188 2 514.292756 1026.57096 NaN NaN NaN NaN NaN NaN NaN 36.928 1 40.63 40.13 41.13 3.7021 0 0 0 0.53105 1 6260 6260 1.3295 0.5359 1 + 30102 21186 19124 19135 34850 34850 0.058737256147196604 PGPGEMESGSL 11 Unmodified _PGPGEMESGSL_ 0 0 0 ENST00000566475.1_1_6:31022164-31027375:+|nuORF ENST00000566475.1_1_6:31022164-31027375:+|nuORF ENST00000566475.1_1_6:31022164-31027375:+|nuORF MSMS UPN48_class_I_Rep_2 6 530.3070068359375 2 530.734414 1059.45428 NaN NaN NaN NaN NaN NaN NaN 26.901 1 30.532 30.032 31.032 3.6311 0 0 0 0.38417 1 3490 3490 1.1933 0.39971 1 30103 7491 19125 19136 34851 34851 -0.07307380667339203 PGPKLWYR 8 Unmodified _PGPKLWYR_ 0 0 0 ENSG00000012171|ENST00000616701|SEMA3B;nc|ENSG00000012171|Q13214-2|SEMA3B;ENST00000419007.5_1_3:50313561-50314134:+|nuORF ENSG00000012171|ENST00000616701|SEMA3B ENSG00000012171|ENST00000616701|SEMA3B MSMS UPN46_class_I_Rep_3 1 508.7866516113281 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 20.475 1 20.475 19.975 20.975 0 0 0 0 0.40746 1 2137 2137 0.69038 0 1 30104 781 19126 19137 34852 34852 0.053177877509369864 PGPRRPRRPRR 11 Unmodified _PGPRRPRRPRR_ 0 0 0 REV__ENSG00000116014|ENST00000234371|KISS1R REV__ENSG00000116014|ENST00000234371|KISS1R MULTI-MSMS UPN48_class_I_Rep_1 5 467.62396240234375 3 467.62386 1399.84975 0.069328 3.2419E-05 0.19356 9.0511E-05 0.26288 0.00012293 467.6238307319429 102.68 0.24408 106.3 106.06 106.3 3.6164 84 34 3 0 0 0 0.65439 1 24739 24739 2.8433 0 1 1869500 + 30105 18591 19127 19138 34853 34853 0.16581910150625845 PGPRRPRRPRR 11 Unmodified _PGPRRPRRPRR_ 0 0 0 REV__ENSG00000116014|ENST00000234371|KISS1R REV__ENSG00000116014|ENST00000234371|KISS1R MULTI-SECPEP UPN48_class_I_Rep_1 5 467.6239013671875 3 467.62386 1399.84975 0.069328 3.2419E-05 0.19356 9.0511E-05 0.26288 0.00012293 467.6238307319429 102.68 0.24408 106.3 106.06 106.3 3.6164 84 34 3 0 0 0 22.551 1 24712 24712 1.3296 0 1 1869500 + 30106 18591 19127 19138 34854 34854 0.16581910150625845 PGPRRPRRPRR 11 Unmodified _PGPRRPRRPRR_ 0 0 0 REV__ENSG00000116014|ENST00000234371|KISS1R REV__ENSG00000116014|ENST00000234371|KISS1R MULTI-MATCH UPN48_class_I_Rep_2 6 3 467.62386 1399.84975 0.19987 9.3463E-05 0.93889 0.00043905 1.1388 0.00053251 467.9586507580336 102.2 0.026123 105.92 105.9 105.93 3.7252 -0.18878 0.00098528 NaN 2.8433 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 85164 + 30107 18591 19127 19138 0.16581910150625845 PGPSIKSGQ 9 Unmodified _PGPSIKSGQ_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.73779296875 2 435.737617 869.460681 -0.41052 -0.00017888 0.52778 0.00022997 0.11725 5.1092E-05 435.73771023476576 32.144 0.57129 35.857 35.637 36.208 3.7131 103 46 3 0 0 0 0.24936 1 5457 5457 17.113 4.8722 1 199990 + 30108 25058 19128 19139 34855 34855 0.02072925346340071 PGPSIKSGQ 9 Unmodified _PGPSIKSGQ_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 435.7374572753906 2 435.737617 869.460681 0.0074801 3.2594E-06 -0.045356 -1.9763E-05 -0.037876 -1.6504E-05 435.7374386137591 32.338 0.55405 35.865 35.622 36.176 3.5266 67 57 2 0 0 0 0.24936 3 4905 4870;4905;4947 17.113 4.8722 1 89780 + 30109 25058 19128 19139 34856;34857;34858 34857 0.02072925346340071 PGPSIKSGQ 9 Unmodified _PGPSIKSGQ_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 435.7372131347656 2 435.737617 869.460681 0.10266 4.4731E-05 -0.37827 -0.00016483 -0.27562 -0.0001201 435.73731047166984 32.324 0.41725 35.974 35.723 36.141 3.6497 80 46 2 0 0 0 0.47197 1 4951 4951 3.5965 0 1 90392 + 30110 25058 19128 19139 34859 34859 0.02072925346340071 PGPSIKSGQ 9 Unmodified _PGPSIKSGQ_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 435.7375793457031 2 435.737617 869.460681 0.038713 1.6869E-05 -0.14347 -6.2515E-05 -0.10476 -4.5647E-05 435.7374038417926 32.082 0.44562 35.783 35.618 36.063 3.7015 80 47 2 0 0 0 0.32682 2 4859 4815;4859 12.241 3.1773 1 105070 + 30111 25058 19128 19139 34860;34861 34861 0.02072925346340071 PGPSIKSGQ 9 Unmodified _PGPSIKSGQ_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 435.737617 869.460681 -0.41052 -0.00017888 0.52778 0.00022997 0.11725 5.1092E-05 435.73771023476576 32.144 0.57129 35.857 35.637 36.208 3.7131 0.061803 8.9611E-06 NaN 17.113 103 46 3 NaN NaN NaN NaN 0 NaN NaN 0 199990 + 30112 25058 19128 19139 0.02072925346340071 PGPSIKSGQ 9 Unmodified _PGPSIKSGQ_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|404|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 435.737617 869.460681 -0.9909 -0.00043177 0.98623 0.00042974 -0.004665 -2.0327E-06 435.7378902711796 32.398 0.69162 35.684 35.368 36.059 3.2867 -0.1107 0.00040849 NaN 17.113 112 53 3 NaN NaN NaN NaN 0 NaN NaN 0 180270 + 30113 25058 19128 19139 0.02072925346340071 PGPSKKAIYK 10 Unmodified _PGPSKKAIYK_ 0 0 0 REV__L1MA3_dup415|chr1:184922906-184925053:-|3.6323726384124218|0.0350331037233193|6.7|151.0|62|3|sense REV__L1MA3_dup415|chr1:184922906-184925053:-|3.6323726384124218|0.0350331037233193|6.7|151.0|62|3|sense MSMS UPN48_class_I_Rep_1 5 544.8245849609375 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 89.535 1 93.16 92.66 93.66 3.6255 0 0 0 0.53105 1 21505 21505 1.6526 0.17072 1 + 30114 25028 19129 19140 34862 34862 0.09866595265361866 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.8309326171875 2 573.331882 1144.64921 0.40573 0.00023262 -3.3012 -0.0018927 -2.8955 -0.0016601 573.3301199954556 90.362 0.048523 93.988 93.966 94.015 3.626 9 6 2 0 0 0 0.65559 1 21716 21716 2.7352 0 1 45547 30115 32915 19130 19141 34863 34863 0.08267158199919322 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.3297119140625 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 88.474 1 92.097 91.597 92.597 3.6229 0 0 0 0.38417 1 21226 21226 2.7352 0 1 30116 32915 19130 19141 34864 34864 0.08267158199919322 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.3302001953125 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 88.73 1 92.353 91.853 92.853 3.6229 0 0 0 0.38417 1 21291 21291 2.7352 0 1 30117 32915 19130 19141 34865 34865 0.08267158199919322 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.3303833007812 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 90.02 1 93.646 93.146 94.146 3.6255 0 0 0 0.38417 1 21634 21634 2.7352 0 1 30118 32915 19130 19141 34866 34866 0.08267158199919322 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 573.3301391601562 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 88.812 1 92.55 92.05 93.05 3.7379 0 0 0 0.38417 1 21141 21141 2.7352 0 1 30119 32915 19130 19141 34867 34867 0.08267158199919322 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 573.331882 1144.64921 0.48222 0.00027647 -3.2643 -0.0018715 -2.7821 -0.0015951 573.8316446362443 90.074 0.10419 93.821 93.768 93.872 3.7471 -0.07141 0.00032067 NaN 2.7352 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 70074 30120 32915 19130 19141 0.08267158199919322 PGPSKSLVLTF 11 Unmodified _PGPSKSLVLTF_ 0 0 0 THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|61|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 573.331882 1144.64921 0.48348 0.0002772 -4.0273 -0.002309 -3.5438 -0.0020318 573.3292557545257 90.021 0.11362 93.868 93.815 93.929 3.847 -0.024393 -0.00055415 NaN 2.7352 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 69357 30121 32915 19130 19141 0.08267158199919322 PGPTILATI 9 Unmodified _PGPTILATI_ 0 0 0 REV__ENSG00000176142|ENST00000319172|TMEM39A REV__ENSG00000176142|ENST00000319172|TMEM39A MULTI-MSMS UPN48_class_I_Rep_1 5 441.7679748535156 2 441.768386 881.522219 0.14243 6.292E-05 0.60004 0.00026508 0.74247 0.000328 441.7685105340292 60.596 0.39451 64.07 63.82 64.215 3.4737 40 29 2 0 0 0 0.35081 1 13460 13460 10.824 2.0785 1 123240 + 30122 20579 19131 19142 34868 34868 0.07671857045625075 PGPVEEGPH 9 Unmodified _PGPVEEGPH_ 0 0 0 HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|42|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|42|2|sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|42|2|sense MSMS UPN46_class_I_Rep_3 1 459.72161865234375 2 459.719424 917.424296 NaN NaN NaN NaN NaN NaN NaN 95.868 1 95.868 95.368 96.368 0 0 0 0 0.35339 1 23292 23292 7.9102 2.6795 1 30123 8342 19132 19143 34869 34869 -0.03771951550368158 PGPVGRRRVP 10 Unmodified _PGPVGRRRVP_ 0 0 0 REV__ENST00000331593.5_1_1:39957322-39957700:+|nuORF REV__ENST00000331593.5_1_1:39957322-39957700:+|nuORF MSMS UPN48_class_I_Rep_2 6 545.8318481445312 2 545.833249 1089.65194 NaN NaN NaN NaN NaN NaN NaN 89.141 1 92.878 92.378 93.378 3.7379 0 0 0 0.53105 1 21228 21228 3.5965 0.31518 1 + 30124 21782 19133 19144 34870 34870 0.11070471168136464 PGPVGRRRVP 10 Unmodified _PGPVGRRRVP_ 0 0 0 REV__ENST00000331593.5_1_1:39957322-39957700:+|nuORF REV__ENST00000331593.5_1_1:39957322-39957700:+|nuORF MSMS UPN48_class_I_Rep_2 6 545.832275390625 2 545.833249 1089.65194 NaN NaN NaN NaN NaN NaN NaN 89.28 1 93.018 92.518 93.518 3.7379 0 0 0 0.53105 1 21265 21265 6.2058 2.9245 1 + 30125 21782 19133 19144 34871 34871 0.11070471168136464 PGPVPHPAQSK 11 Unmodified _PGPVPHPAQSK_ 0 0 0 nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3 nc|ENSG00000092529|P20807-2|CAPN3 nc|ENSG00000092529|P20807-2|CAPN3 MSMS UPN48_class_I_Rep_1 5 557.8056640625 2 557.803823 1113.59309 NaN NaN NaN NaN NaN NaN NaN 119.89 1 123.51 123.01 124.01 3.6189 0 0 0 0.38417 1 29272 29272 1.1933 0.39971 1 30126 1394 19134 19145 34872 34872 0.04083950083122545 PGPYGEGVAF 10 Unmodified _PGPYGEGVAF_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS UPN46_class_I_Rep_3 1 497.23797607421875 2 497.23745 992.460347 0.24865 0.00012364 0.43316 0.00021538 0.6818 0.00033902 497.23770856517547 66.013 0.53461 66.013 65.749 66.283 0 73 53 2 0 0 0 0.38932 2 14978 14978;14987 20.454 1.3304 1 208820 + 30127 21388 19135 19146 34873;34874 34873 -0.03618494373529302 PGQGFEVEL 9 Unmodified _PGQGFEVEL_ 0 0 0 REV__ENSG00000247746|ENST00000500968|USP51 REV__ENSG00000247746|ENST00000500968|USP51 MSMS UPN47_class_I_Rep_3 4 488.2539367675781 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 77.018 1 80.287 79.787 80.787 3.269 0 0 0 0.2088 1 19164 19164 15.847 1.2655 1 + 30128 21345 19136 19147 34875 34875 -0.01734511719087095 PGQLFMLLL 9 Unmodified _PGQLFMLLL_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|245|2|anti-sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|245|2|anti-sense MSMS UPN47_class_I_Rep_3 4 516.3027954101562 2 516.301539 1030.58852 NaN NaN NaN NaN NaN NaN NaN 48.422 1 51.657 51.157 52.157 3.2345 0 0 0 0.39428 1 10526 10526 2.0598 0 1 + 30129 24145 19137 19148 34876 34876 0.07445349616023123 PGQNLRVPT 9 Unmodified _PGQNLRVPT_ 0 0 0 REV__MLT1B_dup9825|chr9:93027336-93027630:-|1.8160486959775268|0.0460413609144956|5.3|151.0|16|1|anti-sense REV__MLT1B_dup9825|chr9:93027336-93027630:-|1.8160486959775268|0.0460413609144956|5.3|151.0|16|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.7958984375 2 491.277441 980.540328 0.15404 7.5679E-05 3.2755 0.0016092 3.4296 0.0016849 491.2790655860212 46.55 0.070686 50.069 50.026 50.097 3.5192 5 3 2 0 0 0 0.47197 1 9107 9107 3.5965 0.60125 1 27377 + 30130 31624 19138 19149 34877 34877 0.049279920203161964 PGRLDSVLEK 10 Unmodified _PGRLDSVLEK_ 0 0 0 ENST00000521277.5_2_6:109416334-109416490:+|nuORF ENST00000521277.5_2_6:109416334-109416490:+|nuORF ENST00000521277.5_2_6:109416334-109416490:+|nuORF MSMS UPN46_class_I_Rep_3 1 556.9808959960938 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 81.806 1 81.806 81.306 82.306 0 0 0 0 0.53105 1 19340 19340 1.1933 0.12188 1 30131 7232 19139 19150 34878 34878 0.06716799534751772 PGRQKDHLVK 10 Unmodified _PGRQKDHLVK_ 0 0 0 REV__nc|ENSG00000164347|Q969S9-5|GFM2 REV__nc|ENSG00000164347|Q969S9-5|GFM2 MULTI-MSMS UPN48_class_I_Rep_3 7 589.3428344726562 2 589.343646 1176.67274 0.53637 0.00031611 -1.5154 -0.00089308 -0.97901 -0.00057697 589.3426334399251 84.039 0.12951 87.767 87.709 87.839 3.7281 28 15 2 0 0 0 0.56309 1 19943 19943 1.6526 0 1 118890 + 30132 20059 19140 19151 34879 34879 0.0914701675710603 PGRWWSKMR 9 Unmodified _PGRWWSKMR_ 0 0 0 ENST00000559361.5_1_14:73637505-73637637:+|nuORF ENST00000559361.5_1_14:73637505-73637637:+|nuORF ENST00000559361.5_1_14:73637505-73637637:+|nuORF MSMS UPN47_class_I_Rep_2 3 401.8775939941406 3 401.878315 1202.61312 NaN NaN NaN NaN NaN NaN NaN 16.254 1 19.64 19.14 20.14 3.3864 0 0 0 0.40038 1 1007 1007 0.26902 0 1 30133 7448 19141 19152 34880 34880 0.019914225420961884 PGSAAYPPLPF 11 Unmodified _PGSAAYPPLPF_ 0 0 0 L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|87|3|sense L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|87|3|sense L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|87|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.2789916992188 2 558.78985 1115.56515 0.41996 0.00023467 -0.10512 -5.874E-05 0.31484 0.00017593 558.7894693846345 61.975 0.61955 65.486 65.095 65.715 3.5104 123 54 3 0 0 0 0.59712 1 13633 13633 5.2969 0.066215 1 189910 30134 14018 19142 19153 34881 34881 0.011986271030309581 PGSPAKRKHH 10 Unmodified _PGSPAKRKHH_ 0 0 0 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 MSMS UPN48_class_I_Rep_1 5 557.8148803710938 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 90.937 1 94.563 94.063 95.063 3.626 0 0 0 0.53105 1 21853 21853 1.6526 0 1 + 30135 32033 19143 19154 34882 34882 0.06329594271414862 PGSPAKRKHH 10 Unmodified _PGSPAKRKHH_ 0 0 0 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 MSMS UPN48_class_I_Rep_1 5 557.814453125 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 100.5 1 104.11 103.61 104.61 3.6084 0 0 0 0.53105 1 24273 24273 1.6526 0 1 + 30136 32033 19143 19154 34883 34883 0.06329594271414862 PGSPRRQLI 9 Unmodified _PGSPRRQLI_ 0 0 0 REV__LTR12C_dup1031|chr6:6605654-6606990:-|1.294600355301106|0.0414345087972043|4.97|147.0|64|3|anti-sense REV__LTR12C_dup1031|chr6:6605654-6606990:-|1.294600355301106|0.0414345087972043|4.97|147.0|64|3|anti-sense MSMS UPN48_class_I_Rep_1 5 512.7849731445312 2 512.306532 1022.59851 NaN NaN NaN NaN NaN NaN NaN 100.26 1 103.87 103.37 104.37 3.6084 0 0 0 0.39428 1 24217 24217 2.0598 0 1 + 30137 30792 19144 19155 34884 34884 0.08811673665604758 PGSRRRFL 8 Unmodified _PGSRRRFL_ 0 0 0 ENST00000392553.2_1_14:105715530-105715764:+|nuORF ENST00000392553.2_1_14:105715530-105715764:+|nuORF ENST00000392553.2_1_14:105715530-105715764:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.7933349609375 2 494.793592 987.572632 -0.12957 -6.4108E-05 -1.2968 -0.00064164 -1.4264 -0.00070575 494.79293733760596 13.823 0.21469 17.21 17.168 17.383 3.3871 39 24 2 0 0 0 0.82752 1 422 422 4.3292 0 1 56907 30138 6523 19145 19156 34885 34885 0.07834824213978209 PGSYLPSSYSF 11 Unmodified _PGSYLPSSYSF_ 0 0 0 ENSG00000180357.9,ZNF609,chr15,+,I5.1,64654403,64670345|27|16.4|1|intron;ENSG00000180357.9,ZNF609,chr15,+,I5.1,64654403,64670345|27|16.4|2|intron;ENSG00000180357.9,ZNF609,chr15,+,I5.1,64654403,64670345|27|16.4|3|intron;ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357.9,ZNF609,chr15,+,I5.1,64654403,64670345|27|16.4|1|intron ENSG00000180357.9,ZNF609,chr15,+,I5.1,64654403,64670345|27|16.4|1|intron MSMS UPN48_class_I_Rep_3 7 602.7811279296875 2 602.779679 1203.5448 NaN NaN NaN NaN NaN NaN NaN 68.796 1 72.305 71.805 72.805 3.5094 0 0 0 0.37149 1 15799 15799 7.609 0 1 30139 4887 19146 19157 34886 34886 -0.04882588347436467 PGTHNCLDCVR 11 Unmodified _PGTHNCLDCVR_ 0 0 0 REV__MER45A_dup2678|chr15:49980676-49980852:-|1.0369212129375518|0.0304342874238631|5.09|150.0|4|3|sense REV__MER45A_dup2678|chr15:49980676-49980852:-|1.0369212129375518|0.0304342874238631|5.09|150.0|4|3|sense MSMS UPN46_class_I_Rep_3 1 607.7747802734375 2 607.773882 1213.53321 NaN NaN NaN NaN NaN NaN NaN 30.633 1 30.633 30.133 31.133 0 0 0 0 0.38417 1 5016 5016 0.96228 0.36078 1 + 30140 31327 19147 19158 34887 34887 -0.06501431914080058 PGVHIGTITTI 11 Unmodified _PGVHIGTITTI_ 0 0 0 L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|4|1|sense L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|4|1|sense L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.822021484375 2 554.821681 1107.62881 0.53342 0.00029595 0.23804 0.00013207 0.77145 0.00042802 554.8218094273309 54.813 0.61082 58.321 57.947 58.558 3.5082 83 43 2 0 0 0 0.2728 3 11645 11594;11605;11645 26.268 1.2772 1 282900 30141 11408 19148 19159 34888;34889;34890 34890 0.07929987540137517 PGVHIGTITTI 11 Unmodified _PGVHIGTITTI_ 0 0 0 L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|4|1|sense L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|4|1|sense L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.822509765625 2 554.821681 1107.62881 0.6039 0.00033506 0.13685 7.5925E-05 0.74075 0.00041098 554.8217192025221 54.729 0.69914 58.311 57.932 58.631 3.5817 81 44 2 0 0 0 0.31099 2 11593 11549;11593 32.786 1.5173 1 226930 30142 11408 19148 19159 34891;34892 34892 0.07929987540137517 PGVSFGKKR 9 Unmodified _PGVSFGKKR_ 0 0 0 REV__MER61F_dup39|chr6:127297420-127297984:+|1.2316948536072323|0.2051072160894413|2.59|149.0|32|3|anti-sense REV__MER61F_dup39|chr6:127297420-127297984:+|1.2316948536072323|0.2051072160894413|2.59|149.0|32|3|anti-sense MSMS UPN47_class_I_Rep_2 3 488.290771484375 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 110.51 1 114.03 113.53 114.53 3.5271 0 0 0 0.39518 1 26901 26901 1.8442 1.1539 1 + 30143 31514 19149 19160 34893 34893 0.07784886262618329 PGVVRFRG 8 Unmodified _PGVVRFRG_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;ENST00000563629.1_1_16:50783909-50820919:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MSMS UPN47_class_I_Rep_3 4 444.26409912109375 2 444.264136 886.51372 -0.24304 -0.00010797 0.49683 0.00022072 0.25379 0.00011275 444.2642413300161 107.76 0.18929 111.29 111.23 111.42 3.5382 69 23 4 0 0 0 0.82752 1 26304 26304 2.5775 0 1 66892000 30144 1245 19150 19161 34894 34894 0.06592347919661279 PGVVRFRG 8 Unmodified _PGVVRFRG_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;ENST00000563629.1_1_16:50783909-50820919:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 444.264136 886.51372 -0.24304 -0.00010797 0.49683 0.00022072 0.25379 0.00011275 444.2642413300161 107.76 0.18929 111.29 111.23 111.42 3.5382 -0.069433 0.00016899 NaN 2.5775 69 23 4 NaN NaN NaN NaN 0 NaN NaN 0 66892000 30145 1245 19150 19161 0.06592347919661279 PGVVRFRG 8 Unmodified _PGVVRFRG_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;ENST00000563629.1_1_16:50783909-50820919:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 444.264136 886.51372 0.1547 6.8726E-05 0.19006 8.4439E-05 0.34476 0.00015316 444.2641239570756 107.75 0.1981 111.43 111.36 111.56 3.6813 0.069433 -0.00010358 NaN 2.5775 62 19 4 NaN NaN NaN NaN 0 NaN NaN 0 122970000 30146 1245 19150 19161 0.06592347919661279 PGWAQAPAPGQ 11 Unmodified _PGWAQAPAPGQ_ 0 0 0 REV__ENST00000506838.5_1_4:668467-669238:+|nuORF REV__ENST00000506838.5_1_4:668467-669238:+|nuORF MSMS UPN47_class_I_Rep_3 4 540.2416381835938 2 540.267073 1078.51959 NaN NaN NaN NaN NaN NaN NaN 111.04 1 114.57 114.07 115.07 3.529 0 0 0 0.38417 1 27244 27244 1.1933 0 1 + 30147 22717 19151 19162 34895 34895 -0.01652598359351032 PGWFVAARTS 10 Unmodified _PGWFVAARTS_ 0 0 0 REV__L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|43|3|sense REV__L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|43|3|sense MSMS UPN46_class_I_Rep_3 1 546.2847900390625 2 546.285266 1090.55598 NaN NaN NaN NaN NaN NaN NaN 15.826 1 15.826 15.326 16.326 0 0 0 0 0.53105 1 974 974 1.1933 0.50296 1 + 30148 24834 19152 19163 34896 34896 0.0143227853739063 PGWFYWPP 8 Unmodified _PGWFYWPP_ 0 0 0 REV__ENST00000370382.7_2_1:92546069-92546234:+|nuORF REV__ENST00000370382.7_2_1:92546069-92546234:+|nuORF MSMS UPN48_class_I_Rep_3 7 525.290283203125 2 525.247621 1048.48069 NaN NaN NaN NaN NaN NaN NaN 35.632 1 39.299 38.799 39.799 3.6667 0 0 0 0.40738 1 5802 5802 0.79363 0 1 + 30149 21954 19153 19164 34897 34897 -0.04161278923061218 PHAHFHEL 8 Unmodified _PHAHFHEL_ 0 0 0 nc|ENSG00000204403|Q6UXS9-2|CASP12 nc|ENSG00000204403|Q6UXS9-2|CASP12 nc|ENSG00000204403|Q6UXS9-2|CASP12 MSMS UPN48_class_I_Rep_3 7 494.2423095703125 2 494.243401 986.472249 NaN NaN NaN NaN NaN NaN NaN 58.896 1 62.419 61.919 62.919 3.5231 0 0 0 0.39624 1 12805 12805 9.3474 0 1 30150 16805 19154 19165 34898 34898 -0.02152832839669827 PHALAAPTAP 10 Unmodified _PHALAAPTAP_ 0 0 0 REV__LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|14|2|sense REV__LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 473.2589111328125 2 473.261259 944.507966 NaN NaN NaN NaN NaN NaN NaN 55.245 1 55.245 54.745 55.745 0 0 0 0 0.53105 1 12005 12005 7.2892 1.5288 1 + 30151 30806 19155 19166 34899 34899 0.03349204617313717 PHAPGIVRFDE 11 Unmodified _PHAPGIVRFDE_ 0 0 0 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 REV__nc|ENSG00000204290|Q9UIR0-3|BTNL2 MSMS UPN47_class_I_Rep_1 2 619.3180541992188 2 619.319837 1236.62512 NaN NaN NaN NaN NaN NaN NaN 67.414 1 70.775 70.275 71.275 3.3611 0 0 0 0.38417 1 16211 16211 1.4819 0.15237 1 + 30152 21186 19156 19167 34900 34900 0.016273177662924354 PHAWEFFS 8 Unmodified _PHAWEFFS_ 0 0 0 L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|59|1|anti-sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|59|1|anti-sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_3 7 510.7330017089844 2 510.732335 1019.45012 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.29 118.79 119.79 3.6433 0 0 0 0.40738 1 27521 27521 0.79363 0 1 30153 9891 19157 19168 34901 34901 -0.058830573080854265 PHCHWPDY 8 Unmodified _PHCHWPDY_ 0 0 0 ENST00000392688.6_1_1:152285965-152286112:+|nuORF ENST00000392688.6_1_1:152285965-152286112:+|nuORF ENST00000392688.6_1_1:152285965-152286112:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 527.7136840820312 2 527.713619 1053.41269 0.32975 0.00017401 0.00045217 2.3862E-07 0.3302 0.00017425 527.7134533472355 80.771 0.5201 84.333 84.179 84.699 3.5624 100 67 2 0 0 0 0.82752 1 19335 19335 0.79363 0 1 377590 30154 6526 19158 19169 34902 34902 -0.11188471845366621 PHCIPVCLL 9 Unmodified _PHCIPVCLL_ 0 0 0 ENST00000515406.2_1_5:149379556-149379766:-|nuORF ENST00000515406.2_1_5:149379556-149379766:-|nuORF ENST00000515406.2_1_5:149379556-149379766:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.7649841308594 2 497.764266 993.513979 NaN NaN NaN NaN NaN NaN NaN 86.097 1 86.097 85.597 86.597 0 0 0 0 0.39326 1 20574 20574 2.3027 0 1 30155 7203 19159 19170 34903 34903 0.01696263532994635 PHCSLSHSGA 10 Unmodified _PHCSLSHSGA_ 0 0 0 REV__THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense REV__THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 498.22027587890625 2 498.221808 994.429063 NaN NaN NaN NaN NaN NaN NaN 30.205 1 33.747 33.247 34.247 3.542 0 0 0 0.53105 1 4305 4305 14.838 0 1 + 30156 32296 19160 19171 34904 34904 -0.0683739067925444 PHCSLSHSGA 10 Unmodified _PHCSLSHSGA_ 0 0 0 REV__THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense REV__THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 498.2201232910156 2 498.221808 994.429063 NaN NaN NaN NaN NaN NaN NaN 30.167 1 33.882 33.382 34.382 3.7146 0 0 0 0.53105 1 4316 4316 3.2813 0 1 + 30157 32296 19160 19171 34905 34905 -0.0683739067925444 PHCSLSHSGA 10 Unmodified _PHCSLSHSGA_ 0 0 0 REV__THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense REV__THE1D_dup1882|chr3:15778765-15779121:+|5.542908597975802|0.0154702667352263|8.49|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 498.22003173828125 2 498.221808 994.429063 NaN NaN NaN NaN NaN NaN NaN 30.287 1 34.001 33.501 34.501 3.7146 0 0 0 0.53105 1 4350 4350 9.3831 3.1773 1 + 30158 32296 19160 19171 34906 34906 -0.0683739067925444 PHCSQTDLFG 10 Unmodified _PHCSQTDLFG_ 0 0 0 REV__L1PA5_dup9174|chr13:51709501-51712453:+|5.901703265480252|0.068078445635401|6.44|151.0|135|2|anti-sense REV__L1PA5_dup9174|chr13:51709501-51712453:+|5.901703265480252|0.068078445635401|6.44|151.0|135|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.2193603515625 2 552.742573 1103.47059 NaN NaN NaN NaN NaN NaN NaN 114.45 1 118.08 117.58 118.58 3.6301 0 0 0 0.53105 1 27826 27826 1.4819 0 1 + 30159 29825 19161 19172 34907 34907 -0.07700254710607624 PHDADGCQ 8 Unmodified _PHDADGCQ_ 0 0 0 REV__Tigger2b_Pri_dup1185|chr9:90836315-90837197:+|1.609073923544895|0.0095953430070376|7.39|151.0|39|1|anti-sense REV__Tigger2b_Pri_dup1185|chr9:90836315-90837197:+|1.609073923544895|0.0095953430070376|7.39|151.0|39|1|anti-sense MSMS UPN46_class_I_Rep_3 1 421.6578369140625 2 421.658509 841.302466 NaN NaN NaN NaN NaN NaN NaN 103.75 1 103.75 103.25 104.25 0 0 0 0 0.40404 1 25313 25313 5.2307 2.6532 1 + 30160 32690 19162 19173 34908 34908 -0.12453316904395706 PHFASFVH 8 Unmodified _PHFASFVH_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS UPN48_class_I_Rep_1 5 470.77288818359375 2 471.235045 940.455536 NaN NaN NaN NaN NaN NaN NaN 74.674 1 78.164 77.664 78.664 3.49 0 0 0 0.40738 1 17655 17655 0.79363 0 1 30161 1282 19163 19174 34909 34909 -0.017073337256192644 PHFFLPGILH 10 Unmodified _PHFFLPGILH_ 0 0 0 ENST00000523643.5_1_8:30240060-30240704:-|nuORF ENST00000523643.5_1_8:30240060-30240704:-|nuORF ENST00000523643.5_1_8:30240060-30240704:-|nuORF MSMS UPN48_class_I_Rep_1 5 589.3311157226562 2 589.329476 1176.6444 NaN NaN NaN NaN NaN NaN NaN 46.27 1 49.789 49.289 50.289 3.5192 0 0 0 0.53105 1 9016 9016 1.8442 0.36234 1 30162 7245 19164 19175 34910 34910 0.06314318847830691 PHFHLRPP 8 Unmodified _PHFHLRPP_ 0 0 0 MSTB-int_dup654|chr12:16020523-16022052:+|1.467036205199465|0.1497817975938793|3.29|151.0|73|2|anti-sense;THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|62|1|anti-sense;THE1B-int_dup3033|chr10:103133634-103135208:+|5.5372900564519565|0.2592161206910084|4.42|151.0|91|3|anti-sense;MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|88|2|anti-sense;MST-int_dup28|chr3:172361075-172361753:-|1.800027419022313|0.0890629087961062|4.34|151.0|39|3|anti-sense MSTB-int_dup654|chr12:16020523-16022052:+|1.467036205199465|0.1497817975938793|3.29|151.0|73|2|anti-sense MSTB-int_dup654|chr12:16020523-16022052:+|1.467036205199465|0.1497817975938793|3.29|151.0|73|2|anti-sense MSMS UPN48_class_I_Rep_3 7 500.83331298828125 2 500.777411 999.540269 NaN NaN NaN NaN NaN NaN NaN 112.76 1 116.41 115.91 116.91 3.6568 0 0 0 0.40738 1 26798 26798 0.79363 0 1 30163 16521 19165 19176 34911 34911 0.04048036810991107 PHFLFWRL 8 Unmodified _PHFLFWRL_ 0 0 0 ENST00000367876.8_1_1:166822064-166822124:+|nuORF ENST00000367876.8_1_1:166822064-166822124:+|nuORF ENST00000367876.8_1_1:166822064-166822124:+|nuORF MSMS UPN48_class_I_Rep_3 7 558.31201171875 2 558.311087 1114.60762 NaN NaN NaN NaN NaN NaN NaN 88.184 1 91.995 91.495 92.495 3.8104 0 0 0 0.40738 1 20932 20932 0.79363 0 1 30164 6357 19166 19177 34912 34912 0.05490067021946743 PHFLVPFP 8 Unmodified _PHFLVPFP_ 0 0 0 REV__L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|83|3|anti-sense REV__L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|83|3|anti-sense MSMS UPN46_class_I_Rep_3 1 477.7514343261719 2 477.265813 952.517074 NaN NaN NaN NaN NaN NaN NaN 101.23 1 101.23 100.73 101.73 0 0 0 0 0.40738 1 24697 24697 0.79363 0 1 + 30165 25989 19167 19178 34913 34913 0.03891597973665739 PHFLYPLILR 10 Unmodified _PHFLYPLILR_ 0 0 0 L1MA8_dup2506|chr4:123098239-123099518:-|1.1887621039404823|0.2305355955039833|2.37|151.0|56|1|anti-sense L1MA8_dup2506|chr4:123098239-123099518:-|1.1887621039404823|0.2305355955039833|2.37|151.0|56|1|anti-sense L1MA8_dup2506|chr4:123098239-123099518:-|1.1887621039404823|0.2305355955039833|2.37|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_1 5 634.8789672851562 2 634.879333 1267.74411 NaN NaN NaN NaN NaN NaN NaN 106.24 1 109.87 109.37 110.37 3.6277 0 0 0 0.53105 1 25602 25602 1.6526 0.32309 1 30166 10047 19168 19179 34914 34914 0.1209513646178948 PHFPFICI 8 Unmodified _PHFPFICI_ 0 0 0 REV__L1MC4_dup3117|chr2:135155613-135156965:+|1.887644394402892|0.3174073737032789|2.57|151.0|99|3|anti-sense REV__L1MC4_dup3117|chr2:135155613-135156965:+|1.887644394402892|0.3174073737032789|2.57|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_3 7 487.2503662109375 2 487.251849 972.489145 NaN NaN NaN NaN NaN NaN NaN 60.043 1 63.56 63.06 64.06 3.5169 0 0 0 0.40581 1 13157 13157 2.8892 0 1 + 30167 26903 19169 19180 34915 34915 0.0017995172190694575 PHFPMTPE 8 Unmodified _PHFPMTPE_ 0 0 0 nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4 nc|ENSG00000091656|Q86UP3|ZFHX4 nc|ENSG00000091656|Q86UP3|ZFHX4 MSMS UPN47_class_I_Rep_2 3 478.2209777832031 2 478.220746 954.426938 NaN NaN NaN NaN NaN NaN NaN 34.211 1 37.651 37.151 38.151 3.4398 0 0 0 0.40738 1 6159 6159 0.79363 0 1 30168 1378 19170 19181 34916 34916 -0.052098194170639545 PHGLRYLI 8 Unmodified _PHGLRYLI_ 0 0 0 HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|4|1|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|4|1|sense HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 484.787109375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 87.988 1 87.988 87.488 88.488 0 0 0 0 0.40738 1 21107 21107 0.79363 0 1 30169 8266 19171 19182 34917 34917 0.07525787750932977 PHGQGRLIL 9 Unmodified _PHGQGRLIL_ 0 0 0 REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|37|2|sense REV__L1M2a1_dup43|chr7:135153634-135155546:-|1.6080279185807222|0.1688777143455422|3.25|151.0|37|2|sense MSMS UPN47_class_I_Rep_2 3 495.7803039550781 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.453 1 86.865 86.365 87.365 3.4116 0 0 0 0.39326 1 20803 20803 2.3027 0 1 + 30170 24263 19172 19183 34918 34918 0.08184288636891779 PHHHTMLE 8 Unmodified _PHHHTMLE_ 0 0 0 REV__L1MC4_dup20290|chr15:65712929-65713579:-|1.4723094049607175|0.0407591736517734|5.17|150.0|51|3|anti-sense REV__L1MC4_dup20290|chr15:65712929-65713579:-|1.4723094049607175|0.0407591736517734|5.17|150.0|51|3|anti-sense MSMS UPN47_class_I_Rep_1 2 500.76617431640625 2 501.234719 1000.45488 NaN NaN NaN NaN NaN NaN NaN 33.748 1 37.446 36.946 37.946 3.6983 0 0 0 0.40738 1 5983 5983 0.79363 0 1 + 30171 26865 19173 19184 34919 34919 -0.04532496436979727 PHHLHMEEA 9 Unmodified _PHHLHMEEA_ 0 0 0 Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|28|3|anti-sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|28|3|anti-sense Tigger2a_dup1857|chrX:2356580-2356961:+|1.10635011777097|0.0038892086108468|8.15|151.0|28|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7504272460938 2 550.750733 1099.48691 NaN NaN NaN NaN NaN NaN NaN 51.812 1 51.812 51.312 52.312 0 0 0 0 0.39428 1 11038 11038 2.0598 0 1 30172 33333 19174 19185 34920 34920 -0.05885128753857316 PHHLLPRT 8 Unmodified _PHHLLPRT_ 0 0 0 REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|24|2|anti-sense REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|24|2|anti-sense MSMS UPN46_class_I_Rep_3 1 485.7726745605469 2 485.782693 969.550834 NaN NaN NaN NaN NaN NaN NaN 112.43 1 112.43 111.93 112.93 0 0 0 0 0.40738 1 27751 27751 0.79363 0 1 + 30173 27444 19175 19186 34921 34921 0.06484019465415258 PHHLLPRT 8 Unmodified _PHHLLPRT_ 0 0 0 REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|24|2|anti-sense REV__L1MD2_dup88|chr1:39049956-39050405:+|1.7643952968867098|0.1829441945979852|3.27|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.7719421386719 2 485.782693 969.550834 NaN NaN NaN NaN NaN NaN NaN 21.592 1 25.307 24.807 25.807 3.7144 0 0 0 0.40738 1 2057 2057 0.79363 0 1 + 30174 27444 19175 19186 34922 34922 0.06484019465415258 PHHWWSQR 8 Unmodified _PHHWWSQR_ 0 0 0 REV__ENST00000328848.5_1_15:34633997-34634156:-|nuORF REV__ENST00000328848.5_1_15:34633997-34634156:-|nuORF MSMS UPN48_class_I_Rep_1 5 567.758544921875 2 567.273024 1132.5315 NaN NaN NaN NaN NaN NaN NaN 114.75 1 118.38 117.88 118.88 3.6301 0 0 0 0.40738 1 27899 27899 0.79363 0 1 + 30175 21770 19176 19187 34923 34923 -0.0294693682549223 PHIEFINYW 9 Unmodified _PHIEFINYW_ 0 0 0 REV__L1MB2_dup5698|chr11:73547673-73548245:+|1.0175350457724577|0.0046038378578248|7.79|151.0|26|1|anti-sense REV__L1MB2_dup5698|chr11:73547673-73548245:+|1.0175350457724577|0.0046038378578248|7.79|151.0|26|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.46917724609375 3 406.869591 1217.58694 -0.33168 -0.00013495 0.047186 1.9198E-05 -0.28449 -0.00011575 406.87023188653177 23.903 0.050053 23.903 23.871 23.921 0 6 5 2 0 0 0 0.12545 1 3072 3072 0 0 1 27557 + 30176 25752 19177 19188 34924 34924 -0.0131456814840476 PHIFIEKS 8 Unmodified _PHIFIEKS_ 0 0 0 REV__L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|24|3|sense REV__L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|24|3|sense MSMS UPN48_class_I_Rep_1 5 485.7840881347656 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 23.421 1 26.987 26.487 27.487 3.5655 0 0 0 0.40738 1 2441 2441 0.79363 0 1 + 30177 25723 19178 19189 34925 34925 0.042383752771456784 PHIGLYKIR 9 Unmodified _PHIGLYKIR_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|52|1|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|52|1|sense MSMS UPN46_class_I_Rep_3 1 548.835205078125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 33.646 1 33.646 33.146 34.146 0 0 0 0 0.39326 1 5910 5910 2.3027 0 1 + 30178 29421 19179 19190 34926 34926 0.1112972122211886 PHIGLYKIR 9 Unmodified _PHIGLYKIR_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|52|1|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|52|1|sense MSMS UPN46_class_I_Rep_3 1 548.8338012695312 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 33.818 1 33.818 33.318 34.318 0 0 0 0 0.39326 1 5962 5962 2.3027 0 1 + 30179 29421 19179 19190 34927 34927 0.1112972122211886 PHIHLKII 8 Unmodified _PHIHLKII_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense MSMS UPN47_class_I_Rep_2 3 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 42.948 1 46.309 45.809 46.809 3.3611 0 0 0 0.40738 1 8810 8810 0.79363 0 1 30180 9168 19180 19191 34928 34928 0.12634951164693575 PHIHLKII 8 Unmodified _PHIHLKII_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 485.81231689453125 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 117.44 1 120.89 120.39 121.39 3.4425 0 0 0 0.40738 1 28936 28936 0.79363 0 1 30181 9168 19180 19191 34929 34929 0.12634951164693575 PHIHLKII 8 Unmodified _PHIHLKII_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 485.81146240234375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 114.43 1 118.06 117.56 118.56 3.6301 0 0 0 0.40738 1 27819 27819 0.79363 0 1 30182 9168 19180 19191 34930 34930 0.12634951164693575 PHIIHKLI 8 Unmodified _PHIIHKLI_ 0 0 0 REV__ENSG00000215029|ENST00000642911|TCP11X2 REV__ENSG00000215029|ENST00000642911|TCP11X2 MSMS UPN47_class_I_Rep_1 2 485.8116760253906 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 51.862 1 55.455 54.955 55.955 3.5932 0 0 0 0.40581 1 11497 11497 2.8892 0 1 + 30183 21271 19181 19192 34931 34931 0.12634951164693575 PHIIHKLI 8 Unmodified _PHIIHKLI_ 0 0 0 REV__ENSG00000215029|ENST00000642911|TCP11X2 REV__ENSG00000215029|ENST00000642911|TCP11X2 MSMS UPN48_class_I_Rep_3 7 485.811767578125 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 68.071 1 71.579 71.079 72.079 3.5077 0 0 0 0.40738 1 15586 15586 0.79363 0 1 + 30184 21271 19181 19192 34932 34932 0.12634951164693575 PHKGPTRKA 9 Unmodified _PHKGPTRKA_ 0 0 0 REV__nc|ENSG00000124126|Q8TCU6-3|PREX1 REV__nc|ENSG00000124126|Q8TCU6-3|PREX1 MSMS UPN48_class_I_Rep_1 5 496.2912292480469 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 71.332 1 74.798 74.298 75.298 3.466 0 0 0 0.3967 1 16670 16670 1.4819 0.68827 1 + 30185 18794 19182 19193 34933 34933 0.07663404494110182 PHKKMAAR 8 Unmodified _PHKKMAAR_ 0 0 0 REV__THE1C_dup7040|chr11:86052047-86052394:+|1.905552557839078|0.080331067189115|4.57|151.0|19|2|anti-sense REV__THE1C_dup7040|chr11:86052047-86052394:+|1.905552557839078|0.080331067189115|4.57|151.0|19|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 469.7712097167969 2 469.771271 937.52799 0.079548 3.737E-05 -0.059463 -2.7934E-05 0.020085 9.4356E-06 469.771174567208 55.277 0.059982 58.833 58.804 58.864 3.5554 4 2 2 0 0 0 0.82752 1 11710 11710 0.69038 0 1 963560 + 30186 32281 19183 19194 34934 34934 0.05672677076290711 PHKLTTITNFL 11 Unmodified _PHKLTTITNFL_ 0 0 0 L1ME4b_dup17530|chr15:75895573-75896328:+|1.069903311964307|0.3157928129816579|1.76|151.0|46|3|anti-sense L1ME4b_dup17530|chr15:75895573-75896328:+|1.069903311964307|0.3157928129816579|1.76|151.0|46|3|anti-sense L1ME4b_dup17530|chr15:75895573-75896328:+|1.069903311964307|0.3157928129816579|1.76|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_1 5 642.8692626953125 2 642.869163 1283.72377 NaN NaN NaN NaN NaN NaN NaN 55.032 1 58.54 58.04 59.04 3.5082 0 0 0 0.38417 1 11709 11709 2.7352 1.2533 1 30187 12899 19184 19195 34935 34935 0.0932592101132741 PHKLWHLI 8 Unmodified _PHKLWHLI_ 0 0 0 REV__ENSG00000172840|ENST00000311765|PDP2 REV__ENSG00000172840|ENST00000311765|PDP2 MSMS UPN46_class_I_Rep_3 1 522.7942504882812 2 522.311087 1042.60762 NaN NaN NaN NaN NaN NaN NaN 46.504 1 46.504 46.004 47.004 0 0 0 0 0.40738 1 9540 9540 0.79363 0 1 + 30188 20460 19185 19196 34936 34936 0.08802067021952098 PHKQRLRQ 8 Unmodified _PHKQRLRQ_ 0 0 0 REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF MSMS UPN47_class_I_Rep_2 3 531.8173217773438 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 91.962 1 95.427 94.927 95.927 3.4652 0 0 0 0.40604 1 22745 22745 2.5775 0 1 + 30189 22726 19186 19197 34937 34937 0.09229898134026371 PHKQRLRQ 8 Unmodified _PHKQRLRQ_ 0 0 0 REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF MSMS UPN47_class_I_Rep_3 4 531.8165893554688 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 92.085 1 95.488 94.988 95.988 3.4034 0 0 0 0.40604 1 23001 23001 2.5775 0 1 + 30190 22726 19186 19197 34938 34938 0.09229898134026371 PHKQRLRQ 8 Unmodified _PHKQRLRQ_ 0 0 0 REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 531.817626953125 2 531.817599 1061.62064 0.5187 0.00027585 -0.81571 -0.00043381 -0.29701 -0.00015796 531.8171071135181 91.533 0.34754 95.396 95.332 95.679 3.8634 75 47 2 0 0 0 0.82752 1 21703 21703 5.7604 0 1 462310 + 30191 22726 19186 19197 34939 34939 0.09229898134026371 PHKYIYLV 8 Unmodified _PHKYIYLV_ 0 0 0 L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 516.797607421875 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 29.007 1 32.765 32.265 33.265 3.7578 0 0 0 0.40738 1 4547 4547 0.79363 0 1 30192 9256 19187 19198 34940 34940 0.06587538690860129 PHKYIYLV 8 Unmodified _PHKYIYLV_ 0 0 0 L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense MSMS UPN47_class_I_Rep_3 4 516.8138427734375 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 29.309 1 32.633 32.133 33.133 3.3235 0 0 0 0.40738 1 4720 4720 0.79363 0 1 30193 9256 19187 19198 34941 34941 0.06587538690860129 PHKYIYLV 8 Unmodified _PHKYIYLV_ 0 0 0 L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense L1MA1_dup121|chr1:113966600-113967646:-|3.5600927935748223|0.1067074842914823|5.06|151.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 516.7966918945312 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 25.981 1 29.748 29.248 30.248 3.7663 0 0 0 0.40738 1 3235 3235 0.79363 0 1 30194 9256 19187 19198 34942 34942 0.06587538690860129 PHLAPESNSV 10 Unmodified _PHLAPESNSV_ 0 0 0 REV__L1MDa_dup569|chr2:68227797-68228368:-|1.048068550495648|0.0075533576982061|7.12|151.0|32|2|anti-sense REV__L1MDa_dup569|chr2:68227797-68228368:-|1.048068550495648|0.0075533576982061|7.12|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 525.3201904296875 2 525.764363 1049.51417 -0.12168 -6.3976E-05 -1.2129 -0.00063772 -1.3346 -0.0007017 525.7635162806937 31.469 0.47817 35.198 34.913 35.391 3.7293 38 33 2 0 0 0 0.56309 1 5221 5221 1.6526 0.85899 1 59182 + 30195 27538 19188 19199 34943 34943 -0.008603219418091612 PHLCAHCT 8 Unmodified _PHLCAHCT_ 0 0 0 REV__ENSG00000115649|ENST00000360507|CNPPD1 REV__ENSG00000115649|ENST00000360507|CNPPD1 MULTI-SECPEP UPN48_class_I_Rep_1 5 441.7879638671875 2 441.191465 880.368377 0.017024 7.5109E-06 -2.1601 -0.000953 -2.143 -0.00094549 441.190607993526 35.7 0.11821 39.21 39.16 39.279 3.5101 13 10 2 0 0 0 0.72333 1 5894 5894 0.79363 0 1 43713 + 30196 18575 19189 19200 34944 34944 -0.07659199263207483 PHLCAHCT 8 Unmodified _PHLCAHCT_ 0 0 0 REV__ENSG00000115649|ENST00000360507|CNPPD1 REV__ENSG00000115649|ENST00000360507|CNPPD1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 441.191465 880.368377 0.10421 4.5977E-05 -3.3922 -0.0014966 -3.288 -0.0014506 441.19013962905717 35.236 0.044609 38.909 38.884 38.928 3.6735 -0.15057 -0.00098736 NaN 0.79363 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 43334 + 30197 18575 19189 19200 -0.07659199263207483 PHLDPQIFY 9 Unmodified _PHLDPQIFY_ 0 0 0 ENST00000586864.1_1_19:56160443-56160725:+|nuORF;ENSG00000173581|ENST00000586790|CCDC106 ENST00000586864.1_1_19:56160443-56160725:+|nuORF ENST00000586864.1_1_19:56160443-56160725:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 565.2876586914062 2 565.287474 1128.5604 0.37388 0.00021135 -0.0466 -2.6343E-05 0.32728 0.00018501 565.2874229723584 57.488 0.59748 60.925 60.593 61.19 3.437 94 53 2 0 0 0 0.30034 1 13159 13159 13.906 0.86358 1 90098 30198 4637 19190 19201 34945 34945 0.001257429602674165 PHLFMTFP 8 Unmodified _PHLFMTFP_ 0 0 0 REV__L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|40|1|anti-sense REV__L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|40|1|anti-sense MSMS UPN48_class_I_Rep_2 6 495.2494201660156 2 495.249306 988.484059 NaN NaN NaN NaN NaN NaN NaN 31.9 1 35.541 35.041 36.041 3.641 0 0 0 0.40738 1 4858 4858 0.79363 0 1 + 30199 27047 19191 19202 34946 34946 -0.010643521406905165 PHLFPRQYF 9 Unmodified _PHLFPRQYF_ 0 0 0 REV__L1P3_dup3128|chr17:29903923-29905350:+|1.3015736788769088|0.0089025101586261|7.19|149.0|68|2|anti-sense REV__L1P3_dup3128|chr17:29903923-29905350:+|1.3015736788769088|0.0089025101586261|7.19|149.0|68|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 602.8164672851562 2 602.816733 1203.61891 0.54265 0.00032712 -1.1005 -0.00066339 -0.55783 -0.00033627 602.8159600620238 68.515 0.29111 68.515 68.473 68.764 0 63 30 3 0 0 0 0.41259 1 15666 15666 7.2892 0 1 367850 + 30200 28895 19192 19203 34947 34947 0.02524844325421327 PHLGDYHWQR 10 Unmodified _PHLGDYHWQR_ 0 0 0 REV__ENSG00000165623|ENST00000378681|UCMA REV__ENSG00000165623|ENST00000378681|UCMA MSMS UPN48_class_I_Rep_1 5 436.87933349609375 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 96.224 1 99.837 99.337 100.34 3.6124 0 0 0 0.53105 1 23177 23177 0.77653 0 1 + 30201 20126 19193 19204 34948 34948 -0.025550307994080868 PHLGHLLVP 9 Unmodified _PHLGHLLVP_ 0 0 0 REV__L1P2_dup281|chr3:42103716-42104949:+|1.056713894533613|0.2923432491515408|1.85|151.0|57|2|anti-sense REV__L1P2_dup281|chr3:42103716-42104949:+|1.056713894533613|0.2923432491515408|1.85|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_1 2 491.7956848144531 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.681 1 54.309 53.809 54.809 3.6285 0 0 0 0.39326 1 11134 11134 2.3027 0 1 + 30202 28852 19194 19205 34949 34949 0.08446074268010761 PHLHPKLQ 8 Unmodified _PHLHPKLQ_ 0 0 0 REV__L1MA4A_dup959|chr2:240493337-240494821:-|4.81086575266231|0.0804520847892125|5.9|151.0|72|3|anti-sense REV__L1MA4A_dup959|chr2:240493337-240494821:-|4.81086575266231|0.0804520847892125|5.9|151.0|72|3|anti-sense MSMS UPN48_class_I_Rep_3 7 485.28546142578125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 36.936 1 40.599 40.099 41.099 3.663 0 0 0 0.40738 1 6170 6170 0.79363 0 1 + 30203 25353 19195 19206 34950 34950 0.07004903608185487 PHLHQHLLF 9 Unmodified _PHLHQHLLF_ 0 0 0 L1PB3_dup2812|chr13:26285265-26287299:+|1.9602021019502816|0.0307777397928725|5.99|151.0|74|1|anti-sense;L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|216|3|anti-sense L1PB3_dup2812|chr13:26285265-26287299:+|1.9602021019502816|0.0307777397928725|5.99|151.0|74|1|anti-sense L1PB3_dup2812|chr13:26285265-26287299:+|1.9602021019502816|0.0307777397928725|5.99|151.0|74|1|anti-sense MSMS UPN48_class_I_Rep_2 6 571.31640625 2 571.3169 1140.61925 NaN NaN NaN NaN NaN NaN NaN 71.988 1 75.538 75.038 76.038 3.5505 0 0 0 0.39518 1 16828 16828 1.8442 0 1 30204 15016 19196 19207 34951 34951 0.05456264045255921 PHLITKEPF 9 Unmodified _PHLITKEPF_ 0 0 0 ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|3|intron;ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|2|intron;ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|1|intron;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;RAD54L2|p.R1192Lfs*35|1|0.1|ENSG00000164080|chr3:51662591-51662591|G/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2 ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|3|intron ENSG00000164080.13,RAD54L2,chr3,+,I19.1,51660119,51662425|28|3.4|3|intron MULTI-MSMS UPN47_class_I_Rep_3 4 541.3065185546875 2 541.305667 1080.59678 -0.059732 -3.2333E-05 0.13584 7.3528E-05 0.076103 4.1195E-05 541.3056122586065 39.435 0.48367 42.673 42.505 42.989 3.2379 54 34 2 0 0 0 0.46434 1 7777 7777 4.3292 0 1 63669 30205 4077 19197 19208 34952 34952 0.059706198569983826 PHLKKGVR 8 Unmodified _PHLKKGVR_ 0 0 0 REV__MER11A_dup155|chr3:52728344-52729364:+|1.1106930760420506|0.1751076100582888|2.67|151.0|20|2|sense REV__MER11A_dup155|chr3:52728344-52729364:+|1.1106930760420506|0.1751076100582888|2.67|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 467.801025390625 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 41.527 1 44.893 44.393 45.393 3.3655 0 0 0 0.40746 1 8379 8379 0.69038 0 1 + 30206 31085 19198 19209 34953 34953 0.11776896362141542 PHLPLYIV 8 Unmodified _PHLPLYIV_ 0 0 0 REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|31|2|anti-sense REV__L1ME3A_dup983|chr1:203826801-203827313:-|1.1344317086349678|0.0432294448333056|4.71|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.2862243652344 2 476.286746 950.558939 NaN NaN NaN NaN NaN NaN NaN 106.32 1 106.32 105.82 106.82 0 0 0 0 0.40738 1 25928 25928 0.79363 0 1 + 30207 28041 19199 19210 34954 34954 0.08168153662165878 PHLQRQRRKRQ 11 Unmodified _PHLQRQRRKRQ_ 0 0 0 REV__ENSG00000185290|ENST00000329309|NUPR2 REV__ENSG00000185290|ENST00000329309|NUPR2 MULTI-MSMS UPN48_class_I_Rep_1 5 501.9689636230469 3 501.634424 1501.88144 0.19491 9.7775E-05 0.023987 1.2033E-05 0.2189 0.00010981 501.6344338551738 107.2 0.26826 110.83 110.64 110.9 3.6299 79 31 3 0 0 0 0.68081 1 25826 25826 0.45452 0 1 472620 + 30208 20852 19200 19211 34955 34955 0.15057858113914335 PHLQRQRRKRQ 11 Unmodified _PHLQRQRRKRQ_ 0 0 0 REV__ENSG00000185290|ENST00000329309|NUPR2 REV__ENSG00000185290|ENST00000329309|NUPR2 MULTI-MATCH UPN48_class_I_Rep_2 6 3 501.634424 1501.88144 0.29491 0.00014794 -0.34435 -0.00017274 -0.049437 -2.4799E-05 501.6341992877431 107.16 0.26685 110.84 110.64 110.91 3.6783 0.0030212 -6.3352E-05 NaN 0.45452 81 37 3 NaN NaN NaN NaN 0 NaN NaN 0 382690 + 30209 20852 19200 19211 0.15057858113914335 PHLQRQRRKRQ 11 Unmodified _PHLQRQRRKRQ_ 0 0 0 REV__ENSG00000185290|ENST00000329309|NUPR2 REV__ENSG00000185290|ENST00000329309|NUPR2 MULTI-MATCH UPN48_class_I_Rep_3 7 3 501.634424 1501.88144 0.26221 0.00013153 -0.57637 -0.00028913 -0.31416 -0.00015759 501.63416423693354 107.15 0.2894 110.84 110.66 110.95 3.6899 0.002283 -0.00041252 NaN 0.45452 68 36 3 NaN NaN NaN NaN 0 NaN NaN 0 381980 + 30210 20852 19200 19211 0.15057858113914335 PHLVKKAL 8 Unmodified _PHLVKKAL_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MSMS UPN47_class_I_Rep_1 2 453.2999572753906 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 24.202 1 27.931 27.431 28.431 3.7298 0 0 0 0.40604 1 3124 3124 2.5775 0 1 30211 2134 19201 19212 34956 34956 0.12971262273367756 PHLVKKAL 8 Unmodified _PHLVKKAL_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MSMS UPN47_class_I_Rep_1 2 453.2999267578125 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 24.496 1 28.225 27.725 28.725 3.7298 0 0 0 0.40404 1 3211 3211 5.2307 0 1 30212 2134 19201 19212 34957 34957 0.12971262273367756 PHLVKKAL 8 Unmodified _PHLVKKAL_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MULTI-MSMS UPN47_class_I_Rep_2 3 453.29937744140625 2 453.300188 904.585822 -0.52141 -0.00023635 -0.026558 -1.2039E-05 -0.54797 -0.00024839 453.2999827294603 24.873 0.60489 28.356 27.907 28.512 3.483 69 51 2 0 0 0 0.82752 1 3364 3364 2.5775 0 1 42548 30213 2134 19201 19212 34958 34958 0.12971262273367756 PHLVLLLF 8 Unmodified _PHLVLLLF_ 0 0 0 REV__ENST00000317568.9_1_11:65179294-65179417:+|nuORF REV__ENST00000317568.9_1_11:65179294-65179417:+|nuORF MSMS UPN46_class_I_Rep_3 1 476.3067321777344 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 79.516 1 79.516 79.016 80.016 0 0 0 0 0.40738 1 18684 18684 0.79363 0 1 + 30214 21722 19202 19213 34959 34959 0.11805030558912222 PHMLLPMF 8 Unmodified _PHMLLPMF_ 0 0 0 Tigger4_dup220|chr2:174186324-174188371:+|1.206020938935542|0.0487064561969668|4.63|151.0|38|2|sense Tigger4_dup220|chr2:174186324-174188371:+|1.206020938935542|0.0487064561969668|4.63|151.0|38|2|sense Tigger4_dup220|chr2:174186324-174188371:+|1.206020938935542|0.0487064561969668|4.63|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.25445556640625 2 493.253534 984.492515 0.15569 7.6795E-05 -1.0779 -0.00053165 -0.92216 -0.00045486 493.25294910840574 38.094 0.58644 41.754 41.546 42.133 3.6595 73 54 2 0 0 0 0.82752 1 6449 6449 0.79363 0 1 84370 30215 33421 19203 19214 34960 34960 -0.0003512149572770795 PHMLTSCL 8 Unmodified _PHMLTSCL_ 0 0 0 Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|17|2|sense Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|17|2|sense Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 451.2169494628906 2 451.217149 900.419744 NaN NaN NaN NaN NaN NaN NaN 79.48 1 83.123 82.623 83.623 3.6423 0 0 0 0.40738 1 18845 18845 0.79363 0 1 30216 33110 19204 19215 34961 34961 -0.03444875289153515 PHMVPIYK 8 Unmodified _PHMVPIYK_ 0 0 0 REV__L1MB3_dup17021|chr22:23202199-23202721:-|1.4871538461050369|0.0243841576111221|5.93|151.0|26|1|anti-sense REV__L1MB3_dup17021|chr22:23202199-23202721:-|1.4871538461050369|0.0243841576111221|5.93|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.7709045410156 2 492.770406 983.526258 -0.34561 -0.00017031 0.094146 4.6392E-05 -0.25146 -0.00012391 492.77054334940345 34.911 0.055668 38.175 38.146 38.201 3.2639 4 2 2 0 0 0 0.82752 1 6410 6410 0.69038 0 1 27194 + 30217 25844 19205 19216 34962 34962 0.0338362326766628 PHNWKLNNL 9 Unmodified _PHNWKLNNL_ 0 0 0 L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|57|2|sense L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|57|2|sense L1PA6_dup5514|chr18:23326175-23330209:+|1.1948549545656404|0.0462925035196372|4.69|150.0|57|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 567.7996826171875 2 568.30399 1134.59343 0.037833 2.15E-05 -1.501 -0.00085302 -1.4632 -0.00083152 568.3031716791859 43.203 0.62456 46.89 46.694 47.318 3.6875 47 35 2 0 0 0 0.12321 1 8872 8872 3.9444 3.9444 1 59681 30218 14670 19206 19217 34963 34963 0.031513698029812076 PHPCLYNK 8 Unmodified _PHPCLYNK_ 0 0 0 L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|53|2|anti-sense L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|53|2|anti-sense L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.7728271484375 2 486.242012 970.469472 NaN NaN NaN NaN NaN NaN NaN 27.511 1 31.073 30.573 31.573 3.5629 0 0 0 0.40738 1 3552 3552 0.79363 0.10326 1 30219 12909 19207 19218 34964 34964 -0.01694424288848495 PHPIFFSCVPY 11 Unmodified _PHPIFFSCVPY_ 0 0 0 REV__L1PB3_dup1753|chr9:324829-325266:-|1.4599685894014998|0.0122630376295167|6.9|151.0|32|3|anti-sense REV__L1PB3_dup1753|chr9:324829-325266:-|1.4599685894014998|0.0122630376295167|6.9|151.0|32|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 436.21392822265625 3 436.214482 1305.62162 -1.2047 -0.0005255 0.12647 5.5169E-05 -1.0782 -0.00047034 436.2144846722681 17.917 1.5938 21.275 20.512 22.106 3.3581 340 179 2 0 0 0 0.65439 1 1434 1434 2.8433 0.10809 1 103320 + 30220 30551 19208 19219 34965 34965 -0.0189706833193668 PHPLIVQVW 9 Unmodified _PHPLIVQVW_ 0 0 0 REV__AluSz_dup5427|chr1:150618994-150619285:+|1.0133511968110611|0.2972045356519794|1.77|151.0|13|1|anti-sense REV__AluSz_dup5427|chr1:150618994-150619285:+|1.0133511968110611|0.2972045356519794|1.77|151.0|13|1|anti-sense MSMS UPN46_class_I_Rep_3 1 544.8156127929688 2 544.816202 1087.61785 NaN NaN NaN NaN NaN NaN NaN 14.477 1 14.477 13.977 14.977 0 0 0 0 0.39428 1 643 643 2.0598 0 1 + 30221 17204 19209 19220 34966 34966 0.07754629956502868 PHPLKWLK 8 Unmodified _PHPLKWLK_ 0 0 0 L1MB4_dup7219|chr15:80086651-80087411:-|3.228227524014054|0.0430134180640671|6.23|151.0|12|2|sense L1MB4_dup7219|chr15:80086651-80087411:-|3.228227524014054|0.0430134180640671|6.23|151.0|12|2|sense L1MB4_dup7219|chr15:80086651-80087411:-|3.228227524014054|0.0430134180640671|6.23|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 509.8034973144531 2 509.813462 1017.61237 NaN NaN NaN NaN NaN NaN NaN 89.928 1 93.325 92.825 93.825 3.3976 0 0 0 0.40746 1 22546 22546 0.69038 0 1 30222 10567 19210 19221 34967 34967 0.10426951164686216 PHPLPHLLSL 10 Unmodified _PHPLPHLLSL_ 0 0 0 ENSG00000223773.7,CD99P1,chrX,+,I10.1,2638695,2655026|37|11.18|1|intron ENSG00000223773.7,CD99P1,chrX,+,I10.1,2638695,2655026|37|11.18|1|intron ENSG00000223773.7,CD99P1,chrX,+,I10.1,2638695,2655026|37|11.18|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 562.3334350585938 2 562.334759 1122.65496 0.50626 0.00028469 -0.33518 -0.00018848 0.17108 9.6202E-05 562.3343562882951 110.41 0.16004 114 113.86 114.02 3.5835 36 22 2 0 0 0 0.56309 1 27209 27209 1.6526 0 1 156720 30223 5656 19211 19222 34968 34968 0.09854301502286944 PHPLTHRYD 9 Unmodified _PHPLTHRYD_ 0 0 0 REV__AluJr_dup54584|chr12:11675530-11675824:+|2.946184201904617|0.02107769595887|7.13|151.0|22|3|anti-sense REV__AluJr_dup54584|chr12:11675530-11675824:+|2.946184201904617|0.02107769595887|7.13|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_2 6 567.86572265625 2 568.285797 1134.55704 NaN NaN NaN NaN NaN NaN NaN 46.122 1 49.88 49.38 50.38 3.7579 0 0 0 0.38639 1 8977 8977 3.9444 0 1 + 30224 17042 19212 19223 34969 34969 -0.004855070937082928 PHPMLPNY 8 Unmodified _PHPMLPNY_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B ENSG00000077097|ENST00000264331|TOP2B ENSG00000077097|ENST00000264331|TOP2B MSMS UPN47_class_I_Rep_3 4 484.734619140625 2 484.736563 967.458573 NaN NaN NaN NaN NaN NaN NaN 79.142 1 82.437 81.937 82.937 3.295 0 0 0 0.40581 1 19765 19765 2.8892 0.31174 1 30225 1166 19213 19224 34970 34970 -0.02645826663126627 PHPPFFEVY 9 Unmodified _PHPPFFEVY_ 0 0 0 ENST00000557837.1_1_15:89060105-89074648:-|nuORF;ENSG00000140543|ENST00000268148|DET1;nc|ENSG00000173867|Q7L5Y6-2|DET1 ENST00000557837.1_1_15:89060105-89074648:-|nuORF ENST00000557837.1_1_15:89060105-89074648:-|nuORF MSMS UPN47_class_I_Rep_3 4 566.777099609375 2 566.776742 1131.53893 NaN NaN NaN NaN NaN NaN NaN 48.269 1 51.51 51.01 52.01 3.2405 0 0 0 0.39428 1 10479 10479 2.0598 0 1 30226 3182 19214 19225 34971 34971 -0.021576420684368713 PHPPLLLRC 9 Unmodified _PHPPLLLRC_ 0 0 0 L1MEg_dup2612|chr3:11394435-11395658:+|3.510766452214805|0.0199525761435356|7.46|151.0|58|2|anti-sense L1MEg_dup2612|chr3:11394435-11395658:+|3.510766452214805|0.0199525761435356|7.46|151.0|58|2|anti-sense L1MEg_dup2612|chr3:11394435-11395658:+|3.510766452214805|0.0199525761435356|7.46|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 523.3035278320312 2 523.302404 1044.59026 NaN NaN NaN NaN NaN NaN NaN 91.559 1 95.185 94.685 95.685 3.626 0 0 0 0.35339 1 21999 21999 7.9102 0 1 30227 13379 19215 19226 34972 34972 0.06974403424624143 PHPPVGDEWA 10 Unmodified _PHPPVGDEWA_ 0 0 0 REV__ENST00000257600.3_1_12:113532694-113532959:+|nuORF REV__ENST00000257600.3_1_12:113532694-113532959:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 552.7591552734375 2 552.759081 1103.50361 0.036372 2.0105E-05 0.27686 0.00015304 0.31323 0.00017314 552.7592021069767 41.87 0.58426 45.549 45.238 45.822 3.6792 73 41 2 0 0 0 0.56033 1 8531 8531 3.5965 1.7523 1 99319 + 30228 21538 19216 19227 34973 34973 -0.04400304596242677 PHPQSLFPK 9 Unmodified _PHPQSLFPK_ 0 0 0 ENST00000361357.7_1_17:61772754-61773267:+|nuORF ENST00000361357.7_1_17:61772754-61773267:+|nuORF ENST00000361357.7_1_17:61772754-61773267:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 525.2883911132812 2 525.790184 1049.56581 0.32444 0.00017059 -0.90416 -0.0004754 -0.57972 -0.00030481 525.7897044043503 55.628 0.38178 58.806 58.753 59.134 3.1779 32 24 2 0 0 0 0.12477 1 12721 12721 1.6526 0.17072 1 84730 30229 6327 19217 19228 34974 34974 0.04301466542756316 PHPVRRAL 8 Unmodified _PHPVRRAL_ 0 0 0 REV__L1PA6_dup1902|chr5:37688714-37694840:+|3.649464183151758|0.3026122635179947|3.59|151.0|61|2|sense REV__L1PA6_dup1902|chr5:37688714-37694840:+|3.649464183151758|0.3026122635179947|3.59|151.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 473.2894287109375 2 473.290685 944.566818 0.20986 9.9323E-05 -1.7423 -0.0008246 -1.5324 -0.00072527 473.2897645807799 64.153 0.25732 67.611 67.47 67.727 3.4578 21 16 2 0 0 0 0.82752 1 14503 14503 8.5933 0 1 87112 + 30230 28846 19218 19229 34975 34975 0.09231725702306903 PHPVRRAL 8 Unmodified _PHPVRRAL_ 0 0 0 REV__L1PA6_dup1902|chr5:37688714-37694840:+|3.649464183151758|0.3026122635179947|3.59|151.0|61|2|sense REV__L1PA6_dup1902|chr5:37688714-37694840:+|3.649464183151758|0.3026122635179947|3.59|151.0|61|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 473.2897033691406 2 473.290685 944.566818 0.25423 0.00012032 -1.7354 -0.00082135 -1.4812 -0.00070102 473.2899299035837 64.005 0.23454 67.479 67.324 67.559 3.4743 18 14 2 0 0 0 0.82752 1 14438 14438 8.5933 0 1 109110 + 30231 28846 19218 19229 34976 34976 0.09231725702306903 PHPVRWALHP 10 Unmodified _PHPVRWALHP_ 0 0 0 REV__L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|53|2|sense REV__L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|53|2|sense MSMS UPN48_class_I_Rep_1 5 605.3384399414062 2 605.335624 1208.6567 NaN NaN NaN NaN NaN NaN NaN 64.37 1 67.827 67.327 68.327 3.4573 0 0 0 0.53105 1 14566 14566 1.6526 0 1 + 30232 29744 19219 19230 34977 34977 0.06071355310882609 PHPWLCYH 8 Unmodified _PHPWLCYH_ 0 0 0 REV__LTR12C_dup2424|chr17:17955693-17957026:-|1.4949603188831904|0.0906978426137445|4.04|151.0|49|2|anti-sense REV__LTR12C_dup2424|chr17:17955693-17957026:-|1.4949603188831904|0.0906978426137445|4.04|151.0|49|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.7423706054688 2 526.742179 1051.46981 NaN NaN NaN NaN NaN NaN NaN 113.83 1 113.83 113.33 114.33 0 0 0 0 0.40738 1 28120 28120 0.79363 0 1 + 30233 30815 19220 19231 34978 34978 -0.05387004569001874 PHQHLVVL 8 Unmodified _PHQHLVVL_ 0 0 0 L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.7785339355469 2 471.779619 941.544686 0.083406 3.9349E-05 -1.5816 -0.00074617 -1.4982 -0.00070682 471.77870272874947 74.191 0.22218 77.496 77.356 77.579 3.3048 26 22 2 0 0 0 0.82752 1 18263 18263 13.508 1.8676 1 38956 30234 11056 19221 19232 34979 34979 0.07157501233893981 PHQHLVVL 8 Unmodified _PHQHLVVL_ 0 0 0 L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7795104980469 2 471.779619 941.544686 NaN NaN NaN NaN NaN NaN NaN 73.984 1 77.562 77.062 78.062 3.5779 0 0 0 0.36148 1 17394 17394 19.439 2.3524 1 30235 11056 19221 19232 34980 34980 0.07157501233893981 PHQHLVVL 8 Unmodified _PHQHLVVL_ 0 0 0 L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|64|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.7784118652344 2 471.779619 941.544686 0.25575 0.00012066 -1.6019 -0.00075574 -1.3461 -0.00063508 471.7787658090425 74.084 0.15878 77.634 77.55 77.709 3.5505 30 19 2 0 0 0 0.82752 1 17361 17361 13.508 1.8676 1 75955 30236 11056 19221 19232 34981 34981 0.07157501233893981 PHRCYHSRQI 10 Unmodified _PHRCYHSRQI_ 0 0 0 REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|130|3|sense REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|130|3|sense MSMS UPN46_class_I_Rep_3 1 432.8851013183594 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 73.042 1 73.042 72.542 73.542 0 0 0 0 0.53105 1 16913 16913 0.13989 0 1 + 30237 24268 19222 19233 34982 34982 -0.00543281922909955 PHRHKKRMKH 10 Unmodified _PHRHKKRMKH_ 0 0 0 L1PA16_dup12169|chr15:50049256-50049972:-|2.464698291333354|0.0035282099520243|9.45|151.0|17|2|sense L1PA16_dup12169|chr15:50049256-50049972:-|2.464698291333354|0.0035282099520243|9.45|151.0|17|2|sense L1PA16_dup12169|chr15:50049256-50049972:-|2.464698291333354|0.0035282099520243|9.45|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.26312255859375 3 452.263163 1353.76766 0.22992 0.00010398 -0.63755 -0.00028834 -0.40764 -0.00018436 452.26278886141455 60.117 0.52358 63.604 63.414 63.937 3.4868 75 44 3 0 0 0 0.56444 1 13259 13259 0.69767 0.19171 1 154290 30238 14040 19223 19234 34983 34983 0.10492671747329041 PHRIAVYC 8 Unmodified _PHRIAVYC_ 0 0 0 REV__ENSG00000165204|ENST00000277309|OR1K1 REV__ENSG00000165204|ENST00000277309|OR1K1 MSMS UPN46_class_I_Rep_3 1 479.7496032714844 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 88.315 1 88.315 87.815 88.815 0 0 0 0 0.40604 1 21203 21203 2.5775 0.27475 1 + 30239 20109 19224 19235 34984 34984 0.005012819480612052 PHRKAGKI 8 Unmodified _PHRKAGKI_ 0 0 0 L1P3_dup681|chr3:196908302-196908541:+|1.293623728641526|0.0299058373786171|5.43|151.0|5|2|sense L1P3_dup681|chr3:196908302-196908541:+|1.293623728641526|0.0299058373786171|5.43|151.0|5|2|sense L1P3_dup681|chr3:196908302-196908541:+|1.293623728641526|0.0299058373786171|5.43|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 453.8018798828125 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 25.314 1 28.665 28.165 29.165 3.3509 0 0 0 0.40738 1 3539 3539 0.79363 0 1 30240 13546 19225 19236 34985 34985 0.09936323328042818 PHRKKKKKRQT 11 Unmodified _PHRKKKKKRQT_ 0 0 0 MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|2|1|sense MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|2|1|sense MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9749450683594 3 478.975788 1433.90553 0.11073 5.3038E-05 -1.7583 -0.00084216 -1.6475 -0.00078912 478.97488504396034 102.75 0.043716 106.36 106.34 106.38 3.6164 7 5 2 0 0 0 0.68491 1 24771 24771 0.08335 0.010087 1 275760 30241 16502 19226 19237 34986 34986 0.20593698547577333 PHRKKKKKRQT 11 Unmodified _PHRKKKKKRQT_ 0 0 0 MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|2|1|sense MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|2|1|sense MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 478.975788 1433.90553 0.23098 0.00011063 -1.7257 -0.00082657 -1.4947 -0.00071594 478.9748476700977 102.65 0.17557 106.36 106.23 106.41 3.7108 -0.0032974 1.0365E-05 NaN 0.08335 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 140450 30242 16502 19226 19237 0.20593698547577333 PHRKPYGI 8 Unmodified _PHRKPYGI_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS UPN47_class_I_Rep_1 2 484.2751770019531 2 484.277244 966.539935 NaN NaN NaN NaN NaN NaN NaN 70.606 1 73.977 73.477 74.477 3.3713 0 0 0 0.40738 1 17167 17167 0.79363 0 1 30243 3289 19227 19238 34987 34987 0.05532617091125758 PHRKPYGI 8 Unmodified _PHRKPYGI_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS UPN48_class_I_Rep_2 6 484.27691650390625 2 484.277244 966.539935 NaN NaN NaN NaN NaN NaN NaN 69.58 1 73.102 72.602 73.602 3.5216 0 0 0 0.40738 1 16127 16127 0.79363 0 1 30244 3289 19227 19238 34988 34988 0.05532617091125758 PHRRIDIR 8 Unmodified _PHRRIDIR_ 0 0 0 ENSG00000070501|ENST00000265421|POLB ENSG00000070501|ENST00000265421|POLB ENSG00000070501|ENST00000265421|POLB MSMS UPN46_class_I_Rep_3 1 531.8167724609375 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 95.451 1 95.451 94.951 95.951 0 0 0 0 0.4044 1 23175 23175 4.756 0 1 30245 1075 19228 19239 34989 34989 0.09229898134026371 PHRRIDIR 8 Unmodified _PHRRIDIR_ 0 0 0 ENSG00000070501|ENST00000265421|POLB ENSG00000070501|ENST00000265421|POLB ENSG00000070501|ENST00000265421|POLB MSMS UPN47_class_I_Rep_2 3 531.8171997070312 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 92.094 1 95.559 95.059 96.059 3.4652 0 0 0 0.40738 1 22778 22778 0.79363 0 1 30246 1075 19228 19239 34990 34990 0.09229898134026371 PHRRIDIR 8 Unmodified _PHRRIDIR_ 0 0 0 ENSG00000070501|ENST00000265421|POLB ENSG00000070501|ENST00000265421|POLB ENSG00000070501|ENST00000265421|POLB MSMS UPN48_class_I_Rep_1 5 531.8171997070312 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 91.649 1 95.275 94.775 95.775 3.626 0 0 0 0.39819 1 22022 22022 8.5933 0 1 30247 1075 19228 19239 34991 34991 0.09229898134026371 PHRRIPQLRP 10 Unmodified _PHRRIPQLRP_ 0 0 0 REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF MSMS UPN47_class_I_Rep_2 3 635.3846435546875 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 110.91 1 114.43 113.93 114.93 3.5271 0 0 0 0.53105 1 26997 26997 1.4819 0.51963 1 + 30248 21549 19229 19240 34992 34992 0.1341780701359312 PHRRLSPR 8 Unmodified _PHRRLSPR_ 0 0 0 REV__ENST00000554387.5_1_15:93595580-93595697:-|nuORF REV__ENST00000554387.5_1_15:93595580-93595697:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 509.803955078125 2 509.804491 1017.59443 0.29245 0.00014909 -0.64374 -0.00032818 -0.35129 -0.00017909 510.30576346395026 89.931 0.097137 93.778 93.745 93.842 3.847 20 13 2 0 0 0 0.82752 1 21355 21355 5.2307 0 1 114160 + 30249 22980 19230 19241 34993 34993 0.08633628962547846 PHRRRIMK 8 Unmodified _PHRRRIMK_ 0 0 0 L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.333251953125 2 547.329819 1092.64509 NaN NaN NaN NaN NaN NaN NaN 85.393 1 88.826 88.326 89.326 3.4329 0 0 0 0.40746 1 21244 21244 0.69038 0 1 30250 10439 19231 19242 34994 34994 0.10246835015914257 PHRRRIMK 8 Unmodified _PHRRRIMK_ 0 0 0 L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.3338012695312 2 547.329819 1092.64509 NaN NaN NaN NaN NaN NaN NaN 95.666 1 99.142 98.642 99.642 3.4753 0 0 0 0.40746 1 23539 23539 0.69038 0 1 30251 10439 19231 19242 34995 34995 0.10246835015914257 PHRRRIMK 8 Unmodified _PHRRRIMK_ 0 0 0 L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 547.3447265625 2 547.329819 1092.64509 NaN NaN NaN NaN NaN NaN NaN 93.019 1 96.424 95.924 96.924 3.4052 0 0 0 0.40746 1 23206 23206 0.69038 0 1 30252 10439 19231 19242 34996 34996 0.10246835015914257 PHRRRIMK 8 Unmodified _PHRRRIMK_ 0 0 0 L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 547.2526245117188 2 547.329819 1092.64509 NaN NaN NaN NaN NaN NaN NaN 113.6 1 117.1 116.6 117.6 3.4963 0 0 0 0.40746 1 27870 27870 0.69038 0 1 30253 10439 19231 19242 34997 34997 0.10246835015914257 PHSKSKRSE 9 Unmodified _PHSKSKRSE_ 0 0 0 REV__THE1B_dup20241|chr17:18536939-18537305:-|1.8437393984984585|0.357231515419544|2.37|148.0|18|1|anti-sense REV__THE1B_dup20241|chr17:18536939-18537305:-|1.8437393984984585|0.357231515419544|2.37|148.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2849731445312 2 528.283254 1054.55196 NaN NaN NaN NaN NaN NaN NaN 32.582 1 36.231 35.731 36.731 3.6497 0 0 0 0.32573 1 5046 5046 9.3831 0.78985 1 + 30254 32232 19232 19243 34998 34998 0.02686189043674858 PHSKSKRSE 9 Unmodified _PHSKSKRSE_ 0 0 0 REV__THE1B_dup20241|chr17:18536939-18537305:-|1.8437393984984585|0.357231515419544|2.37|148.0|18|1|anti-sense REV__THE1B_dup20241|chr17:18536939-18537305:-|1.8437393984984585|0.357231515419544|2.37|148.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 528.2830200195312 2 528.283254 1054.55196 NaN NaN NaN NaN NaN NaN NaN 32.139 1 35.841 35.341 36.341 3.7015 0 0 0 0.37476 1 4847 4847 6.7232 0 1 + 30255 32232 19232 19243 34999 34999 0.02686189043674858 PHSLEEFCSD 10 Unmodified _PHSLEEFCSD_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN47_class_I_Rep_3 4 582.2356567382812 2 582.237321 1162.46009 NaN NaN NaN NaN NaN NaN NaN 114.9 1 118.38 117.88 118.88 3.4802 0 0 0 0.53105 1 28237 28237 1.6526 0 1 30256 1473 19233 19244 35000 35000 -0.11464282155702676 PHSSHLYGFS 10 Unmodified _PHSSHLYGFS_ 0 0 0 ENST00000592946.1_1_19:44612073-44612130:-|nuORF ENST00000592946.1_1_19:44612073-44612130:-|nuORF ENST00000592946.1_1_19:44612073-44612130:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 565.7044067382812 2 566.26453 1130.51451 0.45791 0.0002593 -1.7637 -0.00099871 -1.3058 -0.00073941 566.7648111655047 75.215 0.08448 78.461 78.401 78.485 3.2464 11 7 2 0 0 0 0.84575 1 18637 18637 5.7319 0.97584 1 32708 30257 7639 19234 19245 35001 35001 -0.045529022219625404 PHSTPPLGL 9 Unmodified _PHSTPPLGL_ 0 0 0 HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 459.7559509277344 2 459.75581 917.497067 0.030938 1.4224E-05 0.38534 0.00017716 0.41628 0.00019139 459.75602153713317 48.162 0.55027 51.684 51.388 51.938 3.5219 65 36 2 0 0 0 0.25207 1 9589 9589 16.942 3.4344 1 160320 30258 8356 19235 19246 35002 35002 0.03501802243044949 PHSTPPLGL 9 Unmodified _PHSTPPLGL_ 0 0 0 HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 459.7562255859375 2 459.75581 917.497067 0.076485 3.5164E-05 0.24755 0.00011381 0.32404 0.00014898 459.75596328335536 47.863 0.63575 51.599 51.3 51.936 3.7361 78 43 3 0 0 0 0.25207 1 9527 9527 16.942 3.4344 1 198270 30259 8356 19235 19246 35003 35003 0.03501802243044949 PHSTPPLGL 9 Unmodified _PHSTPPLGL_ 0 0 0 HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|149|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 459.6653137207031 2 459.75581 917.497067 0.076485 3.5164E-05 0.24755 0.00011381 0.32404 0.00014898 459.75596328335536 47.863 0.63575 51.599 51.3 51.936 3.7361 78 43 3 0 0 0 0.10341 1 9475 9475 16.942 3.4344 1 198270 30260 8356 19235 19246 35004 35004 0.03501802243044949 PHTLLGGH 8 Unmodified _PHTLLGGH_ 0 0 0 L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|42|3|sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|42|3|sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|42|3|sense MSMS UPN47_class_I_Rep_3 4 416.2288513183594 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 25.284 1 28.635 28.135 29.135 3.3509 0 0 0 0.40738 1 3530 3530 0.79363 0 1 30261 9628 19236 19247 35005 35005 0.01788379757340408 PHTSFTPLIF 10 Unmodified _PHTSFTPLIF_ 0 0 0 REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|80|1|anti-sense REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|80|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 580.3109741210938 2 580.310949 1158.60735 0.49172 0.00028535 0.3197 0.00018552 0.81142 0.00047088 580.3110088494434 67.683 0.25342 71.18 71.023 71.276 3.4964 34 22 2 0 0 0 0.84575 1 15550 15550 14.838 0 1 126740 + 30262 25351 19237 19248 35006 35006 0.03438602511437239 PHTSLLIYY 9 Unmodified _PHTSLLIYY_ 0 0 0 REV__L1MB3_dup2564|chr2:201197730-201198210:-|1.2881895225105189|0.1826413817464687|2.82|151.0|20|1|anti-sense REV__L1MB3_dup2564|chr2:201197730-201198210:-|1.2881895225105189|0.1826413817464687|2.82|151.0|20|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 553.7252807617188 2 553.797675 1105.5808 0.41571 0.00023022 2.6094 0.0014451 3.0251 0.0016753 553.7994412890636 75.605 0.034592 79.008 78.98 79.014 3.4034 4 2 2 0 0 0 0.11705 1 18672 18672 10.824 0 1 35751 + 30263 25868 19238 19249 35007 35007 0.03222913620106738 PHVDTRIIL 9 Unmodified _PHVDTRIIL_ 0 0 0 L1M8_dup1124|chr10:68924451-68925095:-|1.2908463623767985|0.0131034297313849|6.62|151.0|37|1|anti-sense L1M8_dup1124|chr10:68924451-68925095:-|1.2908463623767985|0.0131034297313849|6.62|151.0|37|1|anti-sense L1M8_dup1124|chr10:68924451-68925095:-|1.2908463623767985|0.0131034297313849|6.62|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_2 6 532.3189086914062 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 91.699 1 95.462 94.962 95.962 3.7629 0 0 0 0.39428 1 21832 21832 2.0598 0 1 30264 9239 19239 19250 35008 35008 0.0897742460556401 PHVKKTEQR 9 Unmodified _PHVKKTEQR_ 0 0 0 REV__ENSG00000100987|ENST00000376709|VSX1 REV__ENSG00000100987|ENST00000376709|VSX1 MSMS UPN48_class_I_Rep_2 6 561.8228759765625 2 561.822547 1121.63054 NaN NaN NaN NaN NaN NaN NaN 58.613 1 62.112 61.612 62.612 3.4987 0 0 0 0.4007 1 12782 12782 0.52476 0 1 + 30265 18140 19240 19251 35009 35009 0.07459041348738538 PHVKLFAFY 9 Unmodified _PHVKLFAFY_ 0 0 0 REV__L1PB1_dup9874|chr12:11218223-11219367:+|1.0647843424834826|0.0065484832711784|7.35|149.0|71|2|anti-sense REV__L1PB1_dup9874|chr12:11218223-11219367:+|1.0647843424834826|0.0065484832711784|7.35|149.0|71|2|anti-sense MSMS UPN46_class_I_Rep_3 1 561.3115844726562 2 561.310752 1120.60695 NaN NaN NaN NaN NaN NaN NaN 42.763 1 42.763 42.263 43.263 0 0 0 0 0.38478 1 8492 8492 4.3292 0 1 + 30266 30506 19241 19252 35010 35010 0.051472275822106894 PHVMTSLSFL 10 Unmodified _PHVMTSLSFL_ 0 0 0 REV__L1MB4_dup6434|chr12:118319272-118320270:+|4.80324558344102|0.0209310260371907|7.84|151.0|67|3|anti-sense REV__L1MB4_dup6434|chr12:118319272-118320270:+|4.80324558344102|0.0209310260371907|7.84|151.0|67|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.2972412109375 2 566.296985 1130.57942 0.35363 0.00020026 -0.012407 -7.0258E-06 0.34123 0.00019324 566.2968539027702 56.345 0.56011 59.802 59.503 60.063 3.4572 42 28 2 0 0 0 0.54822 1 12828 12828 5.7319 0.97584 1 103900 + 30267 26000 19242 19253 35011 35011 0.019349562596971737 PHVRLRCV 8 Unmodified _PHVRLRCV_ 0 0 0 REV__ENST00000532094.5_1_11:420655-431830:-|nuORF REV__ENST00000532094.5_1_11:420655-431830:-|nuORF MSMS UPN48_class_I_Rep_1 5 490.28570556640625 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 51.985 1 55.508 55.008 56.008 3.5227 0 0 0 0.40604 1 10775 10775 2.5775 0 1 + 30268 22861 19243 19254 35012 35012 0.06440365967625894 PHVVKLEGL 9 Unmodified _PHVVKLEGL_ 0 0 0 REV__nc|ENSG00000138798|P01133-2|EGF REV__nc|ENSG00000138798|P01133-2|EGF MULTI-MSMS UPN47_class_I_Rep_3 4 496.3003845214844 2 496.300384 990.586216 -0.6617 -0.0003284 0.23492 0.00011659 -0.42678 -0.00021181 496.3003595184849 13.252 0.64936 16.626 16.479 17.128 3.3734 169 74 4 0 0 0 0.50015 1 344 344 0.6015 0 1 458130 + 30269 19297 19244 19255 35013 35013 0.09054637202575577 PHWFYCKII 9 Unmodified _PHWFYCKII_ 0 0 0 ENST00000526370.1_1_8:38089361-38092027:+|nuORF;ENST00000519857.5_1_8:38089361-38095786:+|nuORF;ENSG00000085788|ENST00000397166|DDHD2 ENST00000526370.1_1_8:38089361-38092027:+|nuORF ENST00000526370.1_1_8:38089361-38092027:+|nuORF MSMS UPN47_class_I_Rep_1 2 603.8111572265625 2 603.810062 1205.60557 NaN NaN NaN NaN NaN NaN NaN 89.352 1 93.026 92.526 93.526 3.6738 0 0 0 0.40038 1 22341 22341 0.6015 0 1 30270 1268 19245 19256 35014 35014 0.010992702218118211 PHWLFSLT 8 Unmodified _PHWLFSLT_ 0 0 0 L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|93|3|anti-sense L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|93|3|anti-sense L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7666320800781 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 110.9 1 114.57 114.07 115.07 3.669 0 0 0 0.40738 1 26379 26379 0.79363 0 1 30271 13896 19246 19257 35015 35015 0.01802392622687421 PHYIYEPI 8 Unmodified _PHYIYEPI_ 0 0 0 REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|86|3|anti-sense REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|86|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.2628173828125 2 516.263468 1030.51238 -0.056449 -2.9143E-05 -0.36565 -0.00018877 -0.4221 -0.00021792 516.2631904272753 43.587 0.60238 47.282 47.028 47.63 3.6951 43 33 2 0 0 0 0.82752 1 9063 9063 5.2307 0.47466 1 63719 + 30272 26220 19247 19258 35016 35016 -0.0016533095977138146 PHYIYEPI 8 Unmodified _PHYIYEPI_ 0 0 0 REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|86|3|anti-sense REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|86|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.2630004882812 2 516.263468 1030.51238 -0.20326 -0.00010493 -0.16964 -8.7581E-05 -0.3729 -0.00019251 516.2633856966833 43.926 0.65893 47.283 46.953 47.611 3.358 43 33 2 0 0 0 0.82752 1 9185 9185 5.2307 0.33366 1 68886 + 30273 26220 19247 19258 35017 35017 -0.0016533095977138146 PHYRPWCM 8 Unmodified _PHYRPWCM_ 0 0 0 L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|249|2|anti-sense L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|249|2|anti-sense L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|249|2|anti-sense MSMS UPN47_class_I_Rep_3 4 545.2425537109375 2 545.241489 1088.46843 NaN NaN NaN NaN NaN NaN NaN 117.85 1 121.27 120.77 121.77 3.4238 0 0 0 0.40738 1 29045 29045 0.79363 0.10326 1 30274 14533 19248 19259 35018 35018 -0.07226961929404752 PIAARRPRLS 10 Unmodified _PIAARRPRLS_ 0 0 0 REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF MSMS UPN46_class_I_Rep_3 1 568.8536987304688 2 568.854181 1135.69381 NaN NaN NaN NaN NaN NaN NaN 97.696 1 97.696 97.196 98.196 0 0 0 0 0.53105 1 23779 23779 5.7319 0 1 + 30275 21939 19249 19260 35019 35019 0.1313902685665198 PIARYSQAG 9 Unmodified _PIARYSQAG_ 0 0 0 chr9:35725727-35727638|76|13.45|0.74|4.18|-|1|TLN1,None|1 chr9:35725727-35727638|76|13.45|0.74|4.18|-|1|TLN1,None|1 chr9:35725727-35727638|76|13.45|0.74|4.18|-|1|TLN1,None|1 MULTI-MSMS UPN48_class_I_Rep_1 5 481.75640869140625 2 481.756341 961.498129 0.13698 6.599E-05 0.033589 1.6182E-05 0.17057 8.2172E-05 481.756312441568 51.758 0.63777 55.281 54.915 55.552 3.5227 115 60 2 0 0 0 0.47493 1 10640 10640 3.2813 0.97858 1 607030 30276 621 19250 19261 35020 35020 0.015840166119460264 PIASDRYI 8 Unmodified _PIASDRYI_ 0 0 0 REV__ENSG00000169251|ENST00000351193|NMD3 REV__ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS UPN48_class_I_Rep_1 5 467.753173828125 2 467.753267 933.491981 0.077584 3.629E-05 -0.04899 -2.2915E-05 0.028594 1.3375E-05 467.75313236861695 50.734 1.0065 54.259 53.773 54.78 3.5246 146 65 3 0 0 0 0.82752 1 10366 10366 14.582 1.0738 1 855060 + 30277 20306 19251 19262 35021 35021 0.022574983804247495 PIASIYRSRD 10 Unmodified _PIASIYRSRD_ 0 0 0 HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|22|3|sense HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|22|3|sense HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.3192749023438 2 589.319837 1176.62512 0.14161 8.3453E-05 -0.88691 -0.00052268 -0.7453 -0.00043922 589.3192263333439 46.501 0.090538 50.201 50.139 50.23 3.6999 8 5 2 0 0 0 0.56309 1 9865 9865 1.6526 0 1 40440 30278 8368 19252 19263 35022 35022 0.0438731776628174 PIAVAMWVKL 10 Unmodified _PIAVAMWVKL_ 0 0 0 REV__Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|29|1|anti-sense REV__Tigger1_dup2057|chr3:15727595-15728306:+|1.5121121583991624|0.0580532804049701|4.7|151.0|29|1|anti-sense MSMS UPN46_class_I_Rep_3 1 564.3358764648438 2 564.335913 1126.65727 NaN NaN NaN NaN NaN NaN NaN 21.177 1 21.177 20.677 21.677 0 0 0 0 0.53105 1 2324 2324 0.40072 0 1 + 30279 32392 19253 19264 35023 35023 0.0990101391571443 PICLLIALY 9 Unmodified _PICLLIALY_ 0 0 0 REV__L1M1_dup3845|chr7:17899107-17901898:-|1.261814895483778|0.1473715833895306|3.1|151.0|140|2|anti-sense REV__L1M1_dup3845|chr7:17899107-17901898:-|1.261814895483778|0.1473715833895306|3.1|151.0|140|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 509.80340576171875 2 509.803914 1017.59328 0.25747 0.00013126 -0.60124 -0.00030651 -0.34377 -0.00017525 509.8034494728429 78.125 0.84352 81.554 81.492 82.335 3.4289 127 82 2 0 0 0 0.50015 1 19510 19510 0.6015 0 1 185010 + 30280 24083 19254 19265 35024 35024 0.08518233758752558 PICRPHEGGMT 11 Unmodified _PICRPHEGGMT_ 0 0 0 HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|136|3|sense;HERV15-int_dup29|chrX:120083366-120087101:-|1.2445459050859102|0.0607388744630503|4.36|150.0|42|2|sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|136|3|sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|136|3|sense MSMS UPN48_class_I_Rep_3 7 599.2782592773438 2 599.2788 1196.54305 NaN NaN NaN NaN NaN NaN NaN 46.317 1 49.954 49.454 50.454 3.6369 0 0 0 0.38417 1 8968 8968 1.0715 0.38109 1 30281 8000 19255 19266 35025 35025 -0.047362439086782615 PIDGSIWCLY 10 Unmodified _PIDGSIWCLY_ 0 0 0 REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|345|3|anti-sense REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|345|3|anti-sense MSMS UPN47_class_I_Rep_2 3 583.7820434570312 2 583.781167 1165.54778 NaN NaN NaN NaN NaN NaN NaN 45.736 1 49.09 48.59 49.59 3.3534 0 0 0 0.53105 1 9666 9666 6.7232 0.36906 1 + 30282 30271 19256 19267 35026 35026 -0.02837036494270251 PIFFHPRL 8 Unmodified _PIFFHPRL_ 0 0 0 REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF REV__ENST00000466695.1_1_6:149387353-149395249:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.8065185546875 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 102.45 1 105.93 105.43 106.43 3.4873 0 0 0 0.40738 1 25185 25185 0.79363 0 1 + 30283 18472 19257 19268 35027 35027 0.06930378130596182 PIFIYIGF 8 Unmodified _PIFIYIGF_ 0 0 0 REV__L1MD_dup1262|chr2:197069463-197071895:-|2.2996257316536077|0.0232650095608284|6.63|151.0|171|3|anti-sense REV__L1MD_dup1262|chr2:197069463-197071895:-|2.2996257316536077|0.0232650095608284|6.63|151.0|171|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2864685058594 2 485.275847 968.537141 NaN NaN NaN NaN NaN NaN NaN 51.131 1 54.655 54.155 55.155 3.5246 0 0 0 0.40581 1 10514 10514 2.8892 0 1 + 30284 27261 19258 19269 35028 35028 0.05161348913622987 PIFYHCKCCV 10 Unmodified _PIFYHCKCCV_ 0 0 0 REV__L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|311|2|anti-sense REV__L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|311|2|anti-sense MSMS UPN48_class_I_Rep_1 5 606.7711181640625 2 606.771765 1211.52898 NaN NaN NaN NaN NaN NaN NaN 16.046 1 19.568 19.068 20.068 3.5217 0 0 0 0.53105 1 728 728 1.8442 0.36234 1 + 30285 30520 19259 19270 35029 35029 -0.0683261266133286 PIGDFKVK 8 Unmodified _PIGDFKVK_ 0 0 0 MER57A-int_dup1130|chr11:1898994-1900896:-|1.5271768104008916|0.0353940936480988|5.43|149.0|64|3|sense MER57A-int_dup1130|chr11:1898994-1900896:-|1.5271768104008916|0.0353940936480988|5.43|149.0|64|3|sense MER57A-int_dup1130|chr11:1898994-1900896:-|1.5271768104008916|0.0353940936480988|5.43|149.0|64|3|sense MSMS UPN47_class_I_Rep_3 4 452.26849365234375 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 15.252 1 18.618 18.118 19.118 3.3659 0 0 0 0.40746 1 743 743 0.69038 0 1 30286 16113 19260 19271 35030 35030 0.06739276765483737 PIGHHIYAVN 10 Unmodified _PIGHHIYAVN_ 0 0 0 REV__L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|32|1|sense REV__L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|32|1|sense MSMS UPN47_class_I_Rep_1 2 560.7990112304688 2 560.79854 1119.58253 NaN NaN NaN NaN NaN NaN NaN 71.694 1 75.069 74.569 75.569 3.3751 0 0 0 0.53105 1 17496 17496 1.8442 0 1 + 30287 30343 19261 19272 35031 35031 0.027519674287077578 PIGPTLWRVR 10 Unmodified _PIGPTLWRVR_ 0 0 0 REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 597.85693359375 2 597.858932 1193.70331 NaN NaN NaN NaN NaN NaN NaN 88.004 1 88.004 87.504 88.504 0 0 0 0 0.53105 1 21112 21112 3.5965 1.2938 1 + 30288 17122 19262 19273 35032 35032 0.11420795142180395 PIGPTLWRVR 10 Unmodified _PIGPTLWRVR_ 0 0 0 REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.857177734375 2 597.858932 1193.70331 0.45509 0.00027208 -3.944 -0.0023579 -3.4889 -0.0020859 597.856066318382 83.888 0.093918 87.454 87.403 87.497 3.5655 16 11 2 0 0 0 0.56033 1 20988 20988 3.5965 1.2938 1 60763 + 30289 17122 19262 19273 35033 35033 0.11420795142180395 PIGPTLWRVR 10 Unmodified _PIGPTLWRVR_ 0 0 0 REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 597.3569946289062 2 597.858932 1193.70331 0.44976 0.00026889 -2.7395 -0.0016378 -2.2897 -0.0013689 598.3594405825113 82.942 0.11576 86.481 86.45 86.565 3.5386 17 13 2 0 0 0 0.84575 1 20745 20745 3.5965 0.60125 1 75473 + 30290 17122 19262 19273 35034 35034 0.11420795142180395 PIGPTLWRVR 10 Unmodified _PIGPTLWRVR_ 0 0 0 REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 597.3571166992188 2 597.858932 1193.70331 0.47749 0.00028547 -2.8131 -0.0016818 -2.3356 -0.0013964 598.3599027514864 87.598 0.11556 91.235 91.147 91.263 3.6372 16 12 2 0 0 0 0.84575 1 21878 21878 3.5965 1.7523 1 65238 + 30291 17122 19262 19273 35035 35035 0.11420795142180395 PIGPTLWRVR 10 Unmodified _PIGPTLWRVR_ 0 0 0 REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense REV__AluSq2_dup30778|chr9:132234025-132234327:-|1.319492025985405|0.2243140906194234|2.56|149.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 597.8568115234375 2 597.858932 1193.70331 NaN NaN NaN NaN NaN NaN NaN 83.661 1 87.011 86.511 87.511 3.35 0 0 0 0.53105 1 20989 20989 3.5965 1.2938 1 + 30292 17122 19262 19273 35036 35036 0.11420795142180395 PIGQVKPDL 9 Unmodified _PIGQVKPDL_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS UPN48_class_I_Rep_1 5 483.7846374511719 2 483.784567 965.554582 0.22976 0.00011116 -0.71192 -0.00034441 -0.48215 -0.00023326 483.78463179953474 65.378 0.15102 68.832 68.745 68.896 3.4541 12 10 2 0 0 0 0.47493 1 14872 14872 3.2813 0 1 59145 30293 1681 19263 19274 35037 35037 0.07042644448608826 PIGYPFHLG 9 Unmodified _PIGYPFHLG_ 0 0 0 Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|143|3|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|143|3|sense Harlequin-int_dup323|chrX:63411164-63416233:+|1.4518495678773926|0.0282597647356671|5.68|150.0|143|3|sense MSMS UPN47_class_I_Rep_2 3 500.7662048339844 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 37.802 1 41.19 40.69 41.69 3.3879 0 0 0 0.39326 1 7249 7249 2.3027 0 1 30294 7978 19264 19275 35038 35038 0.01802392622721527 PIHKGALP 8 Unmodified _PIHKGALP_ 0 0 0 REV__ENST00000545894.1_1_11:61069637-61069871:-|nuORF REV__ENST00000545894.1_1_11:61069637-61069871:-|nuORF MSMS UPN47_class_I_Rep_1 2 416.7562255859375 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.08 1 112.69 112.19 113.19 3.6046 0 0 0 0.40404 1 26877 26877 5.2307 0 1 + 30295 22935 19265 19276 35039 35039 0.07418427313859866 PIHKIVRK 8 Unmodified _PIHKIVRK_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS UPN47_class_I_Rep_1 2 496.290771484375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 66.289 1 69.646 69.146 70.146 3.3576 0 0 0 0.40746 1 15869 15869 0.69038 0 1 30296 568 19266 19277 35040 35040 0.15458042430327623 PIHKLMGI 8 Unmodified _PIHKLMGI_ 0 0 0 L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|59|3|anti-sense L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|59|3|anti-sense L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|59|3|anti-sense MSMS UPN47_class_I_Rep_2 3 454.7726745605469 2 454.772948 907.531344 NaN NaN NaN NaN NaN NaN NaN 28.763 1 32.261 31.761 32.761 3.4986 0 0 0 0.40798 1 4509 4509 0 0 1 30297 10844 19267 19278 35041 35041 0.07387927130321259 PIHKWKQHGR 10 Unmodified _PIHKWKQHGR_ 0 0 0 REV__L1MA2_dup1206|chr3:57263151-57265139:-|2.051847882197214|0.2418521325106735|3.08|151.0|1|1|sense REV__L1MA2_dup1206|chr3:57263151-57265139:-|2.051847882197214|0.2418521325106735|3.08|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 643.8658447265625 2 643.86508 1285.71561 NaN NaN NaN NaN NaN NaN NaN 108.35 1 108.35 107.85 108.85 0 0 0 0 0.53105 1 26491 26491 6.7232 3.1267 1 + 30298 24829 19268 19279 35042 35042 0.08417831605197534 PIHPILFSR 9 Unmodified _PIHPILFSR_ 0 0 0 REV__L1PB4_dup1278|chr3:142319539-142319907:-|1.153159588736294|0.0711493459016616|4.02|151.0|17|1|anti-sense REV__L1PB4_dup1278|chr3:142319539-142319907:-|1.153159588736294|0.0711493459016616|4.02|151.0|17|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3219604492188 2 540.321651 1078.62875 0.1185 6.4026E-05 1.0211 0.00055175 1.1396 0.00061578 540.3223356923035 30.704 0.21189 30.704 30.661 30.873 0 17 16 2 0 0 0 0.43153 1 5040 5040 6.2058 0.44535 1 232620 + 30299 30571 19269 19280 35043 35043 0.09258032330808419 PIHQKPNE 8 Unmodified _PIHQKPNE_ 0 0 0 REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 481.75628662109375 2 481.756341 961.498129 0.018979 9.1433E-06 0.036158 1.7419E-05 0.055137 2.6563E-05 481.7563216071192 51.172 1.0817 54.765 54.45 55.531 3.5932 96 53 3 0 0 0 0.82752 1 11286 11286 8.5933 0 1 329800 + 30300 19096 19270 19281 35044 35044 0.015840166119460264 PIHQKPNE 8 Unmodified _PIHQKPNE_ 0 0 0 REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 481.7562561035156 2 481.756341 961.498129 0.25714 0.00012388 -0.29255 -0.00014094 -0.035403 -1.7055E-05 481.75617008092195 51.553 0.99009 54.891 54.464 55.454 3.3386 106 49 3 0 0 0 0.82752 2 11443 11443;11491 8.5933 8.5933 1 416250 + 30301 19096 19270 19281 35045;35046 35045 0.015840166119460264 PIHQKPNE 8 Unmodified _PIHQKPNE_ 0 0 0 REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF REV__ENST00000489468.5_1_2:9616148-9627599:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 481.756341 961.498129 0.189 9.1053E-05 -0.18914 -9.1118E-05 -0.00013499 -6.5033E-08 481.75617542035553 51.649 0.87809 54.862 54.643 55.521 3.2125 0.022414 -2.5977E-05 NaN 8.5933 111 49 3 NaN NaN NaN NaN 0 NaN NaN 0 320850 + 30302 19096 19270 19281 0.015840166119460264 PIIKSGRKRNP 11 Unmodified _PIIKSGRKRNP_ 0 0 0 REV__L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|23|3|sense REV__L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|23|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 632.8632202148438 2 633.39367 1264.77279 0.61668 0.0003906 -0.84306 -0.00053399 -0.22638 -0.00014339 633.3932734097534 98.462 0.097885 102.36 102.28 102.38 3.9022 15 13 2 0 0 0 22.551 1 23315 23315 2.9952 1.3426 1 870460 + 30303 29140 19271 19282 35047 35047 0.15099254090932845 PIIKSGRKRNP 11 Unmodified _PIIKSGRKRNP_ 0 0 0 REV__L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|23|3|sense REV__L1PA14_dup1080|chr5:69968428-69969486:-|4.027240841313565|0.0432028264876137|6.54|151.0|23|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 633.39367 1264.77279 0.51323 0.00032508 -1.1001 -0.00069681 -0.58689 -0.00037173 633.3934255707 98.718 0.028801 102.15 102.14 102.16 3.4328 -0.1063 -0.00031674 NaN 2.9952 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 194590 + 30304 29140 19271 19282 0.15099254090932845 PIIQQKNFNG 10 Unmodified _PIIQQKNFNG_ 0 0 0 L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|37|3|sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|37|3|sense L1MC4_dup23506|chr20:2913398-2914445:-|1.3121197949084369|0.005630283225403|7.86|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.8170776367188 2 579.81693 1157.61931 0.41666 0.00024159 -0.068573 -3.976E-05 0.34809 0.00020183 579.8170142238182 43.326 0.51752 46.836 46.476 46.993 3.5103 59 42 2 0 0 0 0.56309 1 8148 8148 1.6526 1.6526 1 156690 30305 11468 19272 19283 35048 35048 0.0468021925460107 PIISINVKK 9 Unmodified _PIISINVKK_ 0 0 0 REV__nc|ENSG00000184307|Q8IYP9|ZDHHC23 REV__nc|ENSG00000184307|Q8IYP9|ZDHHC23 MSMS UPN46_class_I_Rep_3 1 506.3324890136719 2 506.331685 1010.64882 NaN NaN NaN NaN NaN NaN NaN 82.285 1 82.285 81.785 82.785 0 0 0 0 0.4007 1 19484 19484 0.52476 0 1 + 30306 20814 19273 19284 35049 35049 0.14391783270752967 PIKEWFFF 8 Unmodified _PIKEWFFF_ 0 0 0 REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|41|3|anti-sense REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|41|3|anti-sense MSMS UPN48_class_I_Rep_2 6 557.01708984375 2 557.292028 1112.5695 NaN NaN NaN NaN NaN NaN NaN 78.843 1 82.476 81.976 82.976 3.6331 0 0 0 0.40738 1 18711 18711 0.79363 0 1 + 30307 27281 19274 19285 35050 35050 0.01772136316594697 PIKHAKRT 8 Unmodified _PIKHAKRT_ 0 0 0 ENSG00000168631|ENST00000462446|MUCL3 ENSG00000168631|ENST00000462446|MUCL3 ENSG00000168631|ENST00000462446|MUCL3 MSMS UPN47_class_I_Rep_3 4 475.8003234863281 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 111.79 1 115.31 114.81 115.81 3.5207 0 0 0 0.40604 1 27453 27453 2.5775 0 1 30308 4384 19275 19286 35051 35051 0.10532592499521343 PIKHSSGST 9 Unmodified _PIKHSSGST_ 0 0 0 L1PB3_dup1913|chr9:123199234-123200560:-|2.2980141463276063|0.1917907664755354|3.58|151.0|40|3|sense L1PB3_dup1913|chr9:123199234-123200560:-|2.2980141463276063|0.1917907664755354|3.58|151.0|40|3|sense L1PB3_dup1913|chr9:123199234-123200560:-|2.2980141463276063|0.1917907664755354|3.58|151.0|40|3|sense MSMS UPN46_class_I_Rep_3 1 457.24267578125 2 457.240524 912.466495 NaN NaN NaN NaN NaN NaN NaN 106.42 1 106.42 105.92 106.92 0 0 0 0 0.39428 1 25952 25952 2.0598 1.2661 1 30309 15266 19276 19287 35052 35052 0.0067602385800000775 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 480.80096435546875 2 480.801174 959.587796 0.26902 0.00012935 -0.7098 -0.00034127 -0.44078 -0.00021193 480.8007751643578 89.943 0.44581 89.943 89.895 90.341 0 72 33 4 0 0 0 0.82752 3 21659 21659;21700;21740 2.5775 0 1 9332400 30310 10157 19277 19288 35053;35054;35055 35053 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 480.8009033203125 2 480.801174 959.587796 NaN NaN NaN NaN NaN NaN NaN 90.233 1 90.233 89.733 90.733 0 0 0 0 0.40604 1 21752 21752 2.5775 0 1 30311 10157 19277 19288 35056 35056 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.8006591796875 2 480.801174 959.587796 0.20405 9.8108E-05 -0.46704 -0.00022455 -0.26299 -0.00012644 480.80090438244093 87.088 0.20818 90.725 90.613 90.822 3.6372 43 26 2 0 0 0 0.82752 1 21736 21736 2.5775 0 1 90641 30312 10157 19277 19288 35057 35057 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.80108642578125 2 480.801174 959.587796 0.13405 6.4453E-05 -0.13238 -6.3648E-05 0.0016727 8.0424E-07 480.8010159453848 86.762 0.19104 90.142 90.111 90.302 3.3801 49 25 2 0 0 0 0.82752 1 21745 21745 2.5775 0 1 396620 30313 10157 19277 19288 35058 35058 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 480.80120849609375 2 480.801174 959.587796 0.12996 6.2483E-05 -0.13083 -6.2903E-05 -0.00087452 -4.2047E-07 480.80097609113096 86.758 0.36324 90.371 90.348 90.711 3.613 63 49 2 0 0 0 0.82752 1 20789 20789 2.5775 0 1 200350 30314 10157 19277 19288 35059 35059 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MSMS UPN48_class_I_Rep_1 5 480.8011474609375 2 480.801174 959.587796 NaN NaN NaN NaN NaN NaN NaN 103.2 1 106.81 106.31 107.31 3.6173 0 0 0 0.40604 1 24879 24879 2.5775 0 1 30315 10157 19277 19288 35060 35060 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 481.3370666503906 2 480.801174 959.587796 0.24224 0.00011647 -0.35203 -0.00016926 -0.1098 -5.2791E-05 480.80086237565155 87.34 0.22156 91.131 90.992 91.214 3.7905 40 27 2 0 0 0 0.72333 1 20734 20734 2.5775 0 1 231640 30316 10157 19277 19288 35061 35061 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 480.801174 959.587796 0.26865 0.00012917 0.41476 0.00019942 0.68342 0.00032859 480.8011562695279 90.402 0.10068 90.402 90.341 90.441 0 -0.052212 0.00063272 NaN 2.5775 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 404470 30317 10157 19277 19288 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 480.801174 959.587796 0.19952 9.5927E-05 -0.46137 -0.00022183 -0.26185 -0.0001259 480.8008743273118 86.298 1.13 89.914 89.462 90.592 3.6153 -0.00023531 -4.3987E-05 NaN 2.5775 413 139 4 NaN NaN NaN NaN 0 NaN NaN 0 5395000 30318 10157 19277 19288 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.801174 959.587796 0.30471 0.0001465 -0.35316 -0.0001698 -0.048457 -2.3298E-05 480.80089276229916 87.005 0.19227 90.446 90.408 90.6 3.4407 -0.0084478 -0.00010572 NaN 2.5775 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 128030 30319 10157 19277 19288 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 480.801174 959.587796 0.13405 6.4453E-05 -0.13238 -6.3648E-05 0.0016727 8.0424E-07 480.8010159453848 86.762 0.19104 90.142 90.111 90.302 3.3801 0.22808 0.00027237 NaN 2.5775 49 25 2 NaN NaN NaN NaN 0 NaN NaN 0 396620 30320 10157 19277 19288 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 480.801174 959.587796 0.13461 6.472E-05 -0.23535 -0.00011316 -0.10074 -4.8436E-05 480.80100716785546 86.948 0.30816 90.328 90.294 90.603 3.3801 -0.12621 7.5725E-06 NaN 2.5775 62 39 2 NaN NaN NaN NaN 0 NaN NaN 0 148520 30321 10157 19277 19288 0.1063855496696533 PIKILMVF 8 Unmodified _PIKILMVF_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 480.801174 959.587796 0.132 6.3468E-05 -0.39959 -0.00019212 -0.26758 -0.00012865 480.8009256857753 86.044 1.0171 89.657 89.201 90.218 3.613 -0.25735 1.542E-05 NaN 2.5775 359 116 5 NaN NaN NaN NaN 0 NaN NaN 0 6021000 30322 10157 19277 19288 0.1063855496696533 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 627.38330078125 2 627.382437 1252.75032 0.55824 0.00035023 0.10826 6.792E-05 0.6665 0.00041815 627.8839130753673 104.69 0.60113 108.45 108.4 109 3.7627 200 90 3 0 0 0 0.48412 1 25801 25801 8.1555 4.559 1 64161000 30323 6925 19278 19289 35062 35062 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 627.3812866210938 2 627.382437 1252.75032 0.63481 0.00039827 0.064178 4.0264E-05 0.69899 0.00043854 627.3825258065075 103.64 0.23314 107.16 106.96 107.19 3.5231 90 35 4 0 0 0 0.48412 1 25166 25166 8.1555 2.4237 1 33091000 30324 6925 19278 19289 35063 35063 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 627.3816528320312 2 627.382437 1252.75032 0.63468 0.00039819 0.22075 0.00013849 0.85543 0.00053668 627.3826687118247 104.7 0.61967 108.23 108.15 108.77 3.5289 167 96 3 0 0 0 0.65821 1 25438 25438 2.4985 0.43874 1 36403000 30325 6925 19278 19289 35064 35064 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 627.3818969726562 2 627.382437 1252.75032 0.42851 0.00026884 -0.037812 -2.3723E-05 0.3907 0.00024512 627.883971009003 103.5 0.30306 107.12 106.85 107.15 3.6209 108 43 3 0 0 0 0.61292 1 24952 24952 4.897 1.9018 1 47965000 30326 6925 19278 19289 35065 35065 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 627.3842163085938 2 627.382437 1252.75032 0.42832 0.00026872 0.50201 0.00031495 0.93034 0.00058368 627.3828287152647 104.78 0.49679 108.4 108.36 108.86 3.6247 117 71 2 0 0 0 0.48412 1 25296 25296 8.1555 2.4237 1 7575000 30327 6925 19278 19289 35066 35066 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 627.3807373046875 2 627.382437 1252.75032 0.49513 0.00031064 -1.7623 -0.0011056 -1.2671 -0.00079498 627.3815021465472 104.21 0.19324 107.91 107.84 108.03 3.6991 67 26 3 0 0 0 0.48412 2 24655 24655;24672 8.1555 2.4237 1 36222000 30328 6925 19278 19289 35067;35068 35067 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 627.3805541992188 2 627.382437 1252.75032 0.60321 0.00037844 -0.62444 -0.00039176 -0.021226 -1.3317E-05 627.8836774193069 104.28 0.27719 108 107.92 108.2 3.7192 122 40 4 0 0 0 0.61292 1 24641 24641 4.897 0 1 30793000 30329 6925 19278 19289 35069 35069 0.13405609902633842 PIKKANEIKVN 11 Unmodified _PIKKANEIKVN_ 0 0 0 ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF ENST00000471341.5_1_1:155785942-155827007:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 627.381591796875 2 627.382437 1252.75032 0.60276 0.00037816 0.19673 0.00012342 0.79949 0.00050159 627.8839921544555 104.55 0.21893 108.27 108.19 108.41 3.7192 68 30 3 0 0 0 0.61292 1 24677 24677 4.897 1.9018 1 13918000 30330 6925 19278 19289 35070 35070 0.13405609902633842 PIKKPVLR 8 Unmodified _PIKKPVLR_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS UPN47_class_I_Rep_2 3 475.8270568847656 2 475.829112 949.643671 NaN NaN NaN NaN NaN NaN NaN 103.02 1 106.54 106.04 107.04 3.5231 0 0 0 0.40738 1 25056 25056 0.79363 0 1 30331 2222 19279 19290 35071 35071 0.1668352419878829 PIKLYIIY 8 Unmodified _PIKLYIIY_ 0 0 0 REV__HAL1M8_dup925|chr7:129022482-129023828:+|1.3249607940145944|0.0081792778070427|7.34|151.0|1|1|sense REV__HAL1M8_dup925|chr7:129022482-129023828:+|1.3249607940145944|0.0081792778070427|7.34|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 511.7431945800781 2 511.817879 1021.6212 NaN NaN NaN NaN NaN NaN NaN 29.635 1 33.393 32.893 33.893 3.7578 0 0 0 0.40738 1 4736 4736 0.79363 0 1 + 30332 23481 19280 19291 35072 35072 0.11125880010513356 PIKPLIALLVV 11 Unmodified _PIKPLIALLVV_ 0 0 0 REV__MLT1B-int_dup510|chr15:99368102-99369365:-|1.142323167314287|0.0991750013543334|3.53|147.0|67|2|anti-sense REV__MLT1B-int_dup510|chr15:99368102-99369365:-|1.142323167314287|0.0991750013543334|3.53|147.0|67|2|anti-sense MSMS UPN48_class_I_Rep_1 5 588.365234375 2 588.409935 1174.80532 NaN NaN NaN NaN NaN NaN NaN 68.352 1 71.804 71.304 72.304 3.4517 0 0 0 0.38417 1 15777 15777 0 0 1 + 30333 31625 19281 19292 35073 35073 0.22490648441180383 PIKPLIALLVV 11 Unmodified _PIKPLIALLVV_ 0 0 0 REV__MLT1B-int_dup510|chr15:99368102-99369365:-|1.142323167314287|0.0991750013543334|3.53|147.0|67|2|anti-sense REV__MLT1B-int_dup510|chr15:99368102-99369365:-|1.142323167314287|0.0991750013543334|3.53|147.0|67|2|anti-sense MSMS UPN48_class_I_Rep_3 7 588.8238525390625 2 588.409935 1174.80532 NaN NaN NaN NaN NaN NaN NaN 68.27 1 71.78 71.28 72.28 3.5094 0 0 0 0.38417 1 15644 15644 0 0 1 + 30334 31625 19281 19292 35074 35074 0.22490648441180383 PILAPSQLPW 10 Unmodified _PILAPSQLPW_ 0 0 0 L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|7|1|sense L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|7|1|sense L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 561.3224487304688 2 561.321317 1120.62808 NaN NaN NaN NaN NaN NaN NaN 58.736 1 62.235 61.735 62.735 3.4987 0 0 0 0.53105 1 12820 12820 1.3295 0 1 30335 8797 19282 19293 35075 35075 0.07259192891069688 PILAPSQLPW 10 Unmodified _PILAPSQLPW_ 0 0 0 L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|7|1|sense L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|7|1|sense L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 561.3221435546875 2 561.321317 1120.62808 NaN NaN NaN NaN NaN NaN NaN 58.389 1 61.912 61.412 62.412 3.5231 0 0 0 0.53105 1 12648 12648 1.3295 0 1 30336 8797 19282 19293 35076 35076 0.07259192891069688 PILCKRKRR 9 Unmodified _PILCKRKRR_ 0 0 0 L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 585.375 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 43.457 1 46.815 46.315 47.315 3.358 0 0 0 0.40038 1 8966 8966 0.6015 0 1 30337 12814 19283 19294 35077 35077 0.1562825025557686 PILDFSAF 8 Unmodified _PILDFSAF_ 0 0 0 THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|75|3|anti-sense THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|75|3|anti-sense THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 455.2375183105469 2 455.239461 908.46437 NaN NaN NaN NaN NaN NaN NaN 56.774 1 56.774 56.274 57.274 0 0 0 0 0.1087 1 12401 12401 49.669 13.542 1 30338 32892 19284 19295 35078 35078 0.006475951201878161 PILDFSAF 8 Unmodified _PILDFSAF_ 0 0 0 THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|75|3|anti-sense THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|75|3|anti-sense THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 455.2375183105469 2 455.239461 908.46437 NaN NaN NaN NaN NaN NaN NaN 56.9 1 56.9 56.4 57.4 0 0 0 0 0.0003891 1 12438 12438 59.795 15.937 1 30339 32892 19284 19295 35079 35079 0.006475951201878161 PILFFLKT 8 Unmodified _PILFFLKT_ 0 0 0 L1ME1_dup562|chr1:50636656-50637153:-|1.151200753550431|0.0103152452224318|6.8|151.0|30|1|anti-sense L1ME1_dup562|chr1:50636656-50637153:-|1.151200753550431|0.0103152452224318|6.8|151.0|30|1|anti-sense L1ME1_dup562|chr1:50636656-50637153:-|1.151200753550431|0.0103152452224318|6.8|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_1 2 489.80615234375 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 59.945 1 63.344 62.844 63.844 3.3982 0 0 0 0.40738 1 13957 13957 0.79363 0 1 30340 12423 19285 19296 35080 35080 0.105296108390462 PILGGKYSIF 10 Unmodified _PILGGKYSIF_ 0 0 0 L1M4_dup19895|chr20:34036153-34037021:-|1.5040974781826704|0.0212630329568087|6.14|151.0|52|3|anti-sense L1M4_dup19895|chr20:34036153-34037021:-|1.5040974781826704|0.0212630329568087|6.14|151.0|52|3|anti-sense L1M4_dup19895|chr20:34036153-34037021:-|1.5040974781826704|0.0212630329568087|6.14|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_1 2 547.8152465820312 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 115.25 1 118.84 118.34 119.34 3.5943 0 0 0 0.53105 1 28508 28508 1.6526 0.85899 1 30341 8881 19286 19297 35081 35081 0.07411790516789551 PILHEPIDV 9 Unmodified _PILHEPIDV_ 0 0 0 REV__ENSG00000197620|ENST00000393985|EOLA1 REV__ENSG00000197620|ENST00000393985|EOLA1 MSMS UPN46_class_I_Rep_3 1 516.4629516601562 2 516.78985 1031.56515 NaN NaN NaN NaN NaN NaN NaN 31.101 1 31.101 30.601 31.601 0 0 0 0 0.39428 1 5153 5153 2.0598 0 1 + 30342 21063 19287 19298 35082 35082 0.050626271030296266 PILHYRMIIK 10 Unmodified _PILHYRMIIK_ 0 0 0 REV__L1MA4_dup5419|chr9:85676105-85677330:+|1.1291404502494764|0.010930497656513|6.69|151.0|7|1|sense REV__L1MA4_dup5419|chr9:85676105-85677330:+|1.1291404502494764|0.010930497656513|6.69|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 642.3857421875 2 642.386468 1282.75838 NaN NaN NaN NaN NaN NaN NaN 90.894 1 94.355 93.855 94.855 3.4613 0 0 0 0.53105 1 22527 22527 0.45834 0 1 + 30343 25183 19288 19299 35083 35083 0.1283146561841022 PILIMFIA 8 Unmodified _PILIMFIA_ 0 0 0 REV__L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|337|3|anti-sense REV__L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|337|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.2800598144531 2 459.280075 916.545597 NaN NaN NaN NaN NaN NaN NaN 90.064 1 90.064 89.564 90.564 0 0 0 0 0.40738 1 21702 21702 0.79363 0 1 + 30344 29756 19289 19300 35084 35084 0.08398579558570418 PILKKPVEPV 10 Unmodified _PILKKPVEPV_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN48_class_I_Rep_2 6 560.3598022460938 2 560.360442 1118.70633 NaN NaN NaN NaN NaN NaN NaN 35.927 1 39.614 39.114 40.114 3.6877 0 0 0 0.53105 1 5986 5986 0.40072 0.40072 1 + 30345 19771 19290 19301 35085 35085 0.1517262547631617 PILLKNEER 9 Unmodified _PILLKNEER_ 0 0 0 REV__ENSG00000197343|ENST00000252713|ZNF655 REV__ENSG00000197343|ENST00000252713|ZNF655 MSMS UPN48_class_I_Rep_2 6 556.3295288085938 2 556.327131 1110.63971 NaN NaN NaN NaN NaN NaN NaN 30.453 1 34.088 33.588 34.588 3.6351 0 0 0 0.40098 1 4460 4460 0.45834 0 1 + 30346 21076 19291 19302 35086 35086 0.08881389914404281 PILLSIKFV 9 Unmodified _PILLSIKFV_ 0 0 0 REV__L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|94|2|anti-sense REV__L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|94|2|anti-sense MSMS UPN46_class_I_Rep_3 1 515.3372802734375 2 515.338978 1028.6634 NaN NaN NaN NaN NaN NaN NaN 91.436 1 91.436 90.936 91.936 0 0 0 0 0.4007 1 22088 22088 0.52476 0 1 + 30347 25605 19292 19303 35087 35087 0.1502185541887684 PILLVIKKC 9 Unmodified _PILLVIKKC_ 0 0 0 L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|2|1|sense L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|2|1|sense L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 513.7661743164062 2 513.840831 1025.66711 NaN NaN NaN NaN NaN NaN NaN 60.084 1 63.249 62.749 63.749 3.1651 0 0 0 0.4007 1 14084 14084 0.52476 0 1 30348 12522 19293 19304 35088 35088 0.15530201921114895 PILMKLVF 8 Unmodified _PILMKLVF_ 0 0 0 Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|7|1|sense Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|7|1|sense Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 480.8018798828125 2 480.801174 959.587796 NaN NaN NaN NaN NaN NaN NaN 90.718 1 90.718 90.218 91.218 0 0 0 0 0.40604 1 21880 21880 2.5775 0 1 30349 457 19294 19305 35089 35089 0.10638554966976699 PILPAADTH 9 Unmodified _PILPAADTH_ 0 0 0 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 MULTI-MSMS UPN47_class_I_Rep_1 2 467.7532043457031 2 467.753267 933.491981 -0.042053 -1.967E-05 -0.23967 -0.00011211 -0.28173 -0.00013178 467.75312115415284 50.132 1.1954 53.761 53.344 54.539 3.6285 111 59 3 0 0 0 0.46434 1 10903 10903 4.3292 0 1 343400 + 30350 20915 19295 19306 35090 35090 0.02257498380402012 PILQESKGQK 10 Unmodified _PILQESKGQK_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS UPN48_class_I_Rep_1 5 564.324462890625 2 564.324588 1126.63462 0.43038 0.00024287 -0.26766 -0.00015105 0.16272 9.1829E-05 564.3244325294182 97.258 0.19704 100.87 100.81 101 3.6088 30 23 2 0 0 0 0.56155 1 23468 23468 2.7352 0.43246 1 98293 30351 4738 19296 19307 35091 35091 0.07637086051818187 PILQESKGQK 10 Unmodified _PILQESKGQK_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MATCH UPN48_class_I_Rep_2 6 2 564.324588 1126.63462 0.4908 0.00027697 -0.15885 -8.9644E-05 0.33194 0.00018732 564.3244093561698 97.277 0.09758 101.06 101 101.1 3.779 0.062214 8.9225E-05 NaN 2.7352 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 68735 30352 4738 19296 19307 0.07637086051818187 PILQLTKKF 9 Unmodified _PILQLTKKF_ 0 0 0 REV__L1MA4A_dup863|chr2:185937993-185940470:-|1.395684646936576|0.1340637708733468|3.38|151.0|40|2|sense REV__L1MA4A_dup863|chr2:185937993-185940470:-|1.395684646936576|0.1340637708733468|3.38|151.0|40|2|sense MSMS UPN47_class_I_Rep_1 2 544.34716796875 2 544.347335 1086.68012 NaN NaN NaN NaN NaN NaN NaN 94.245 1 97.995 97.495 98.495 3.7508 0 0 0 0.40098 1 23423 23423 0.45834 0.45834 1 + 30353 25347 19297 19308 35092 35092 0.14024356304844332 PILVRIIPA 9 Unmodified _PILVRIIPA_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|94|1|anti-sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|94|1|anti-sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|94|1|anti-sense MSMS UPN48_class_I_Rep_3 7 496.33673095703125 2 496.33677 990.658987 NaN NaN NaN NaN NaN NaN NaN 45.875 1 49.512 49.012 50.012 3.6369 0 0 0 0.39428 1 8832 8832 2.0598 1.4583 1 30354 12129 19298 19309 35093 35093 0.16328390995988684 PILWLYCI 8 Unmodified _PILWLYCI_ 0 0 0 L1MB7_dup10595|chr9:20817200-20819022:-|1.123066825965674|0.1706703295936829|2.72|151.0|113|3|anti-sense L1MB7_dup10595|chr9:20817200-20819022:-|1.123066825965674|0.1706703295936829|2.72|151.0|113|3|anti-sense L1MB7_dup10595|chr9:20817200-20819022:-|1.123066825965674|0.1706703295936829|2.72|151.0|113|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7628479003906 2 510.782982 1019.55141 NaN NaN NaN NaN NaN NaN NaN 42.728 1 46.416 45.916 46.916 3.6875 0 0 0 0.40581 1 8715 8715 2.8892 0 1 30355 10674 19299 19310 35094 35094 0.04241678070252419 PIMDGSWWLN 10 Unmodified _PIMDGSWWLN_ 0 0 0 LTR16C_dup3445|chrX:37789854-37790093:+|1.029119327177617|0.0612558917885225|4.07|148.0|7|3|sense;chrX:37790091-37791975|58|12.91|0.0|20.3|+|1|TE_info:LTR16C,LTR16C_dup3445,ERVL,LTR,donor,+,37789854,37790091|None,CYBB|3 LTR16C_dup3445|chrX:37789854-37790093:+|1.029119327177617|0.0612558917885225|4.07|148.0|7|3|sense LTR16C_dup3445|chrX:37789854-37790093:+|1.029119327177617|0.0612558917885225|4.07|148.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 406.85791015625 3 406.858586 1217.55393 NaN NaN NaN NaN NaN NaN NaN 13.724 1 17.096 16.596 17.596 3.3726 0 0 0 0.53105 1 377 377 0.15932 0 1 30356 623 19300 19311 35095 35095 -0.04614518262724232 PIMFLVFF 8 Unmodified _PIMFLVFF_ 0 0 0 LTR37B_dup49|chr1:89650218-89650620:-|1.3259806715557751|0.0134360994137458|6.62|151.0|20|1|anti-sense LTR37B_dup49|chr1:89650218-89650620:-|1.3259806715557751|0.0134360994137458|6.62|151.0|20|1|anti-sense LTR37B_dup49|chr1:89650218-89650620:-|1.3259806715557751|0.0134360994137458|6.62|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_2 6 507.2803955078125 2 507.280075 1012.5456 NaN NaN NaN NaN NaN NaN NaN 92.266 1 96.029 95.529 96.529 3.7629 0 0 0 0.4032 1 21963 21963 6.3541 0 1 30357 15630 19301 19312 35096 35096 0.03982579558589805 PINLGKEIYY 10 Unmodified _PINLGKEIYY_ 0 0 0 HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|62|3|sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|62|3|sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|62|3|sense MSMS UPN46_class_I_Rep_3 1 605.3289794921875 2 605.329339 1208.64412 NaN NaN NaN NaN NaN NaN NaN 97.647 1 97.647 97.147 98.147 0 0 0 0 0.53105 1 23765 23765 1.4819 0 1 30358 8326 19302 19313 35097 35097 0.04814854337359975 PINWVYTQR 9 Unmodified _PINWVYTQR_ 0 0 0 L1PA6_dup131|chr1:88712777-88718454:-|3.2195001097271034|0.0410077142970648|6.29|151.0|101|2|sense L1PA6_dup131|chr1:88712777-88718454:-|3.2195001097271034|0.0410077142970648|6.29|151.0|101|2|sense L1PA6_dup131|chr1:88712777-88718454:-|3.2195001097271034|0.0410077142970648|6.29|151.0|101|2|sense MSMS UPN48_class_I_Rep_2 6 588.809814453125 2 588.811648 1175.60874 NaN NaN NaN NaN NaN NaN NaN 34.561 1 38.235 37.735 38.735 3.6735 0 0 0 0.3967 1 5584 5584 1.4819 0.28856 1 30359 14558 19303 19314 35098 35098 0.02796236600170232 PIPEHLKHLK 10 Unmodified _PIPEHLKHLK_ 0 0 0 REV__MLT2C1_dup1191|chr7:139974917-139975304:-|3.833632938846824|0.0616738688777579|5.96|151.0|10|2|sense REV__MLT2C1_dup1191|chr7:139974917-139975304:-|3.833632938846824|0.0616738688777579|5.96|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 606.3692626953125 2 606.36659 1210.71863 0.52924 0.00032091 3.273 0.0019846 3.8022 0.0023055 606.3690339171641 108.53 0.096054 112.16 112.1 112.19 3.6355 20 9 3 0 0 0 0.56078 2 26674 26674;26679 3.2813 0.28607 1 7833600 + 30360 31831 19304 19315 35099;35100 35099 0.12169661939356047 PIPIKLFLKT 10 Unmodified _PIPIKLFLKT_ 0 0 0 REV__LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|3|1|sense REV__LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 585.2021484375 2 585.38646 1168.75837 NaN NaN NaN NaN NaN NaN NaN 113.32 1 116.99 116.49 117.49 3.663 0 0 0 0.53105 1 27040 27040 0.45834 0 1 + 30361 31021 19305 19316 35101 35101 0.18073788890046671 PIQALFALI 9 Unmodified _PIQALFALI_ 0 0 0 REV__L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|101|3|anti-sense REV__L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|101|3|anti-sense MSMS UPN48_class_I_Rep_2 6 493.30572509765625 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 65.174 1 68.653 68.153 69.153 3.4792 0 0 0 0.35339 1 14795 14795 7.9102 2.6795 1 + 30362 27874 19306 19317 35102 35102 0.10788709350720183 PIRKYPLA 8 Unmodified _PIRKYPLA_ 0 0 0 REV__L1MC4a_dup7624|chr13:49648403-49649244:+|1.6830460164247447|0.0357815884116989|5.56|151.0|14|2|sense REV__L1MC4a_dup7624|chr13:49648403-49649244:+|1.6830460164247447|0.0357815884116989|5.56|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 479.294921875 2 479.297645 956.580737 NaN NaN NaN NaN NaN NaN NaN 17.757 1 21.115 20.615 21.615 3.3581 0 0 0 0.40738 1 1353 1353 0.79363 0 1 + 30363 27022 19307 19318 35103 35103 0.1007095841073351 PIRPGAWL 8 Unmodified _PIRPGAWL_ 0 0 0 REV__THE1B-int_dup4082|chr20:36994242-36995309:+|1.1673936627768768|0.0417814472807794|4.8|151.0|3|1|sense REV__THE1B-int_dup4082|chr20:36994242-36995309:+|1.1673936627768768|0.0417814472807794|4.8|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 455.2678527832031 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 30.408 1 34.043 33.543 34.543 3.6351 0 0 0 0.40604 1 4446 4446 2.5775 0 1 + 30364 32245 19308 19319 35104 35104 0.06530116205169634 PIRQLVFV 8 Unmodified _PIRQLVFV_ 0 0 0 REV__L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|38|3|sense REV__L1MB7_dup6564|chr5:79624426-79625735:-|3.543718076737862|0.165673770421671|4.42|151.0|38|3|sense MSMS UPN47_class_I_Rep_2 3 486.3038635253906 2 486.30547 970.596387 NaN NaN NaN NaN NaN NaN NaN 42.722 1 46.084 45.584 46.584 3.3611 0 0 0 0.40738 1 8741 8741 0.79363 0 1 + 30365 26297 19309 19320 35105 35105 0.10991244927788557 PIRRGLNFHH 10 Unmodified _PIRRGLNFHH_ 0 0 0 REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 416.2359619140625 3 416.235379 1245.68431 -0.13657 -5.6845E-05 -0.60882 -0.00025341 -0.74539 -0.00031026 416.2350106382139 103.47 0.12985 107.09 106.98 107.11 3.6209 20 18 2 0 0 0 0.56033 1 24919 24919 1.7423 0.14999 1 9020400 + 30366 17798 19310 19321 35106 35106 0.07129258571126229 PIRRGLNFHH 10 Unmodified _PIRRGLNFHH_ 0 0 0 REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF REV__ENST00000467659.1_1_22:19026380-19028919:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 416.569091796875 3 416.235379 1245.68431 0.08214 3.419E-05 -0.81448 -0.00033902 -0.73234 -0.00030483 416.23501277707936 104.29 0.055672 107.99 107.96 108.02 3.6991 10 6 2 0 0 0 0.56033 1 24686 24686 1.7423 0.14999 1 4788400 + 30367 17798 19310 19321 35107 35107 0.07129258571126229 PIRTRKFSISS 11 Unmodified _PIRTRKFSISS_ 0 0 0 REV__MLT1A0_dup12665|chrX:119424672-119425018:-|1.14606981088747|0.0580100866283669|4.3|151.0|18|1|anti-sense REV__MLT1A0_dup12665|chrX:119424672-119425018:-|1.14606981088747|0.0580100866283669|4.3|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 646.377685546875 2 646.377686 1290.74082 0.50115 0.00032393 -0.58408 -0.00037754 -0.082932 -5.3605E-05 646.3774580377727 94.686 0.62381 98.462 98.313 98.937 3.7761 127 87 2 0 0 0 0.61292 1 22494 22494 4.897 0.70751 1 276570 + 30368 31588 19311 19322 35108 35108 0.10707841617136182 PISEEQDK 8 Unmodified _PISEEQDK_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MSMS UPN46_class_I_Rep_3 1 473.2309875488281 2 473.229822 944.445091 NaN NaN NaN NaN NaN NaN NaN 95.353 1 95.353 94.853 95.853 0 0 0 0 0.388 1 23147 23147 12.532 0 1 30369 4164 19312 19323 35109 35109 -0.029354059613865502 PISEEQDK 8 Unmodified _PISEEQDK_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MSMS UPN47_class_I_Rep_3 4 473.231201171875 2 473.229822 944.445091 NaN NaN NaN NaN NaN NaN NaN 91.857 1 95.261 94.761 95.761 3.4034 0 0 0 0.388 1 22951 22951 12.532 0 1 30370 4164 19312 19323 35110 35110 -0.029354059613865502 PISFKFDTHF 10 Unmodified _PISFKFDTHF_ 0 0 0 REV__L1MB2_dup8102|chr19:21297999-21298743:+|1.0437772576722686|0.1429058760244482|2.87|150.0|38|1|anti-sense REV__L1MB2_dup8102|chr19:21297999-21298743:+|1.0437772576722686|0.1429058760244482|2.87|150.0|38|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.81298828125 2 619.813856 1237.61316 0.50169 0.00031095 0.0766 4.7478E-05 0.57829 0.00035843 619.8138455309095 47.944 0.70996 51.578 51.273 51.983 3.6339 62 45 2 0 0 0 0.56033 1 9560 9560 3.5965 0.31518 1 275220 + 30371 25779 19313 19324 35111 35111 0.0038570102308312926 PISKSLKEHKL 11 Unmodified _PISKSLKEHKL_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 427.3026428222656 3 427.2626 1278.76597 0.16105 6.8809E-05 3.9152 0.0016728 4.0762 0.0017416 427.26418063368294 65.722 0.15077 69.229 69.122 69.273 3.5077 10 7 2 0 0 0 22.551 1 14884 14884 2.084 0.86914 1 52682 30372 15260 19314 19325 35112 35112 0.13773896419684206 PISKSLKEHKL 11 Unmodified _PISKSLKEHKL_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 427.2626 1278.76597 -0.55242 -0.00023603 4.6312 0.0019788 4.0788 0.0017427 427.2645076700563 66.178 0.86293 69.437 68.795 69.658 3.2588 0.038752 2.8385E-05 NaN 2.084 70 50 2 NaN NaN NaN NaN 0 NaN NaN 0 130480 30373 15260 19314 19325 0.13773896419684206 PISKSLKEHKL 11 Unmodified _PISKSLKEHKL_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|90|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 427.2626 1278.76597 -0.52323 -0.00022356 4.6195 0.0019737 4.0962 0.0017502 427.59894765530373 66.343 0.82693 69.528 69.007 69.834 3.1853 0.13005 1.3299E-05 NaN 2.084 74 57 2 NaN NaN NaN NaN 0 NaN NaN 0 127150 30374 15260 19314 19325 0.13773896419684206 PITLQPTL 8 Unmodified _PITLQPTL_ 0 0 0 L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|25|1|sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|25|1|sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|25|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.76837158203125 2 441.768386 881.522219 0.14243 6.292E-05 0.60004 0.00026508 0.74247 0.000328 441.7685105340292 60.596 0.39451 64.07 63.82 64.215 3.4737 40 29 2 0 0 0 0.82752 1 13417 13417 10.824 0 1 123240 30375 13241 19315 19326 35113 35113 0.07671857045602337 PITQLPAYW 9 Unmodified _PITQLPAYW_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|346|3|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|346|3|anti-sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|346|3|anti-sense MSMS UPN46_class_I_Rep_3 1 545.2316284179688 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 114.44 1 114.44 113.94 114.94 0 0 0 0 0.40038 1 28286 28286 0.6015 0 1 30376 7987 19316 19327 35114 35114 0.029949309656331025 PITWPWLSLL 10 Unmodified _PITWPWLSLL_ 0 0 0 REV__ENST00000397901.7_1_16:89720316-89724043:-|nuORF REV__ENST00000397901.7_1_16:89720316-89724043:-|nuORF MSMS UPN46_class_I_Rep_3 1 613.3524780273438 2 613.352617 1224.69068 NaN NaN NaN NaN NaN NaN NaN 78.821 1 78.821 78.321 79.321 0 0 0 0 0.53105 1 18483 18483 1.6526 0 1 + 30377 22134 19317 19328 35115 35115 0.08732338959271146 PIVEKKKSLK 10 Unmodified _PIVEKKKSLK_ 0 0 0 L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|58|3|sense MSMS UPN47_class_I_Rep_3 4 585.3853759765625 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.11 1 116.62 116.12 117.12 3.5098 0 0 0 0.53105 1 27738 27738 0.35063 0 1 30378 12347 19318 19329 35116 35116 0.1767169939635096 PIVKKLKTLK 10 Unmodified _PIVKKLKTLK_ 0 0 0 L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|72|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|72|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|72|2|sense MSMS UPN48_class_I_Rep_1 5 584.7749633789062 2 584.413009 1166.81146 NaN NaN NaN NaN NaN NaN NaN 64.017 1 67.475 66.975 67.975 3.4578 0 0 0 0.53105 1 14458 14458 0.40072 0.093686 1 30379 14532 19319 19330 35117 35117 0.23473166672738444 PIVKKLKTLK 10 Unmodified _PIVKKLKTLK_ 0 0 0 L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|72|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|72|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|72|2|sense MSMS UPN48_class_I_Rep_1 5 584.78955078125 2 584.413009 1166.81146 NaN NaN NaN NaN NaN NaN NaN 66.297 1 69.748 69.248 70.248 3.4516 0 0 0 0.53105 1 15150 15150 0.40072 0.093686 1 30380 14532 19319 19330 35118 35118 0.23473166672738444 PIVLAPMKKP 10 Unmodified _PIVLAPMKKP_ 0 0 0 REV__nc|ENSG00000148840|Q5VV67-2|PPRC1 REV__nc|ENSG00000148840|Q5VV67-2|PPRC1 MSMS UPN48_class_I_Rep_3 7 547.3328247070312 2 547.343738 1092.67292 NaN NaN NaN NaN NaN NaN NaN 92.952 1 96.83 96.33 97.33 3.8782 0 0 0 0.53105 1 22026 22026 1.4819 0.79152 1 + 30381 19601 19320 19331 35119 35119 0.13029300432776836 PIVPMPWW 8 Unmodified _PIVPMPWW_ 0 0 0 REV__AluSq_dup55|chr1:6089701-6090001:-|1.0943992934207951|0.059695388381584|4.2|151.0|1|1|sense REV__AluSq_dup55|chr1:6089701-6090001:-|1.0943992934207951|0.059695388381584|4.2|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 513.2678833007812 2 513.267499 1024.52044 NaN NaN NaN NaN NaN NaN NaN 80.89 1 84.199 83.699 84.699 3.309 0 0 0 0.40738 1 20234 20234 0.79363 0 1 + 30382 17119 19321 19332 35120 35120 0.00916524756007675 PIVQSVLEY 9 Unmodified _PIVQSVLEY_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|297|3|anti-sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|297|3|anti-sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|297|3|anti-sense MSMS UPN47_class_I_Rep_1 2 524.2904663085938 2 524.289682 1046.56481 NaN NaN NaN NaN NaN NaN NaN 52.182 1 55.741 55.241 56.241 3.5585 0 0 0 0.35339 1 11593 11593 7.9102 0 1 30383 15428 19322 19333 35121 35121 0.04339207383191024 PIVVLMKI 8 Unmodified _PIVVLMKI_ 0 0 0 REV__L1MB7_dup20363|chr18:2677937-2678203:-|1.0084737206068737|0.0054620733089183|7.53|151.0|6|2|sense REV__L1MB7_dup20363|chr18:2677937-2678203:-|1.0084737206068737|0.0054620733089183|7.53|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 456.8030090332031 2 456.801174 911.587796 NaN NaN NaN NaN NaN NaN NaN 31.644 1 35.113 34.613 35.613 3.4691 0 0 0 0.40604 1 5383 5383 2.5775 0.27475 1 + 30384 26203 19323 19334 35122 35122 0.1284655496697269 PIWLMNIN 8 Unmodified _PIWLMNIN_ 0 0 0 L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|40|1|sense L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|40|1|sense L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|40|1|sense MSMS UPN47_class_I_Rep_2 3 500.7655944824219 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 35.015 1 38.441 37.941 38.941 3.4253 0 0 0 0.40364 1 6403 6403 5.7604 1.0044 1 30385 14740 19324 19335 35123 35123 0.021393194050574493 PIWRTSLN 8 Unmodified _PIWRTSLN_ 0 0 0 ENST00000475185.5_1_18:20877516-20877840:-|nuORF ENST00000475185.5_1_18:20877516-20877840:-|nuORF ENST00000475185.5_1_18:20877516-20877840:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 493.29827880859375 2 493.774534 985.534515 0.28565 0.00014105 0.28205 0.00013927 0.56771 0.00028032 493.774615925893 50.496 0.50446 53.839 53.499 54.003 3.3431 41 24 2 0 0 0 0.72333 1 11080 11080 13.906 5.9959 1 80718 30386 6954 19325 19336 35124 35124 0.04116893508660269 PIYIFRIFV 9 Unmodified _PIYIFRIFV_ 0 0 0 L1PA11_dup1123|chr4:142597987-142601688:+|1.263039850367669|0.0442159683077336|4.84|150.0|201|3|anti-sense L1PA11_dup1123|chr4:142597987-142601688:+|1.263039850367669|0.0442159683077336|4.84|150.0|201|3|anti-sense L1PA11_dup1123|chr4:142597987-142601688:+|1.263039850367669|0.0442159683077336|4.84|150.0|201|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3480834960938 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 40.54 1 40.54 40.04 41.04 0 0 0 0 0.40038 1 7873 7873 0.6015 0 1 30387 13637 19326 19337 35125 35125 0.10852660167438444 PIYKLSFH 8 Unmodified _PIYKLSFH_ 0 0 0 L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|169|3|anti-sense L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|169|3|anti-sense L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|169|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 502.25146484375 2 502.781828 1003.5491 -0.48379 -0.00024324 -1.4268 -0.00071734 -1.9105 -0.00096059 502.7812906387053 23.829 0.31448 27.18 26.889 27.204 3.3509 31 23 2 0 0 0 0.72333 1 3048 3048 11.64 0 1 32760 30388 12194 19327 19338 35126 35126 0.0474696565679551 PIYVYTSYQ 9 Unmodified _PIYVYTSYQ_ 0 0 0 REV__L1MB2_dup5434|chr10:96919496-96920379:-|1.002708315159245|0.0125877505913316|6.32|151.0|39|1|anti-sense REV__L1MB2_dup5434|chr10:96919496-96920379:-|1.002708315159245|0.0125877505913316|6.32|151.0|39|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.279052734375 2 567.279315 1132.54408 0.47555 0.00026977 -0.20444 -0.00011597 0.27111 0.00015379 567.2791262082409 77.251 0.64285 80.583 80.284 80.927 3.3315 118 65 2 0 0 0 0.41259 2 19087 19087;19241 7.2892 3.3448 1 145430 + 30389 25747 19328 19339 35127;35128 35127 -0.01689382996482891 PIYVYTSYQ 9 Unmodified _PIYVYTSYQ_ 0 0 0 REV__L1MB2_dup5434|chr10:96919496-96920379:-|1.002708315159245|0.0125877505913316|6.32|151.0|39|1|anti-sense REV__L1MB2_dup5434|chr10:96919496-96920379:-|1.002708315159245|0.0125877505913316|6.32|151.0|39|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.2799682617188 2 567.279315 1132.54408 0.46314 0.00026273 -0.21019 -0.00011924 0.25295 0.00014349 567.2791785346689 77.281 0.68125 80.55 80.3 80.981 3.269 119 72 2 0 0 0 0.41259 1 19320 19320 7.2892 3.3448 1 151850 + 30390 25747 19328 19339 35129 35129 -0.01689382996482891 PKADIKREIQK 11 Unmodified _PKADIKREIQK_ 0 0 0 L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 442.6011657714844 3 442.601504 1324.78268 0.16592 7.3435E-05 -0.85036 -0.00037637 -0.68444 -0.00030294 442.6010926722074 99.653 0.091385 99.653 99.594 99.685 0 18 10 2 0 0 0 0.67113 1 24284 24284 1.3296 0.21989 1 141380 30391 11114 19329 19340 35130 35130 0.13328397305622275 PKADIKREIQK 11 Unmodified _PKADIKREIQK_ 0 0 0 L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 442.601504 1324.78268 0.16592 7.3435E-05 -0.85036 -0.00037637 -0.68444 -0.00030294 442.6010926722074 99.653 0.091385 99.653 99.594 99.685 0 0.049525 7.9893E-05 NaN 1.3296 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 141380 30392 11114 19329 19340 0.13328397305622275 PKADIKREIQK 11 Unmodified _PKADIKREIQK_ 0 0 0 L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 442.601504 1324.78268 0.1645 7.2808E-05 -1.0397 -0.00046018 -0.87521 -0.00038737 442.60106204974807 95.933 0.13062 99.698 99.598 99.728 3.7648 0.09466 -0.00017153 NaN 1.3296 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 77103 30393 11114 19329 19340 0.13328397305622275 PKADIKREIQK 11 Unmodified _PKADIKREIQK_ 0 0 0 L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 442.601504 1324.78268 -0.023164 -1.0253E-05 -0.7127 -0.00031544 -0.73587 -0.0003257 442.6010962127417 95.896 0.62582 99.508 99.189 99.815 3.6124 -0.095018 0.00026267 NaN 1.3296 157 85 3 NaN NaN NaN NaN 0 NaN NaN 0 238910 30394 11114 19329 19340 0.13328397305622275 PKADIKREIQK 11 Unmodified _PKADIKREIQK_ 0 0 0 L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 442.601504 1324.78268 0.12917 5.717E-05 -1.0264 -0.00045428 -0.89722 -0.00039711 442.6009575774771 95.76 0.51981 99.54 99.163 99.683 3.7804 -0.063139 -0.00015384 NaN 1.3296 110 72 2 NaN NaN NaN NaN 0 NaN NaN 0 208220 30395 11114 19329 19340 0.13328397305622275 PKADIKREIQK 11 Unmodified _PKADIKREIQK_ 0 0 0 L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense L1MC1_dup12745|chr21:45194563-45196200:-|1.002403934855319|0.3207371540818463|1.64|150.0|24|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 442.601504 1324.78268 0.15146 6.7037E-05 -1.0315 -0.00045652 -0.87999 -0.00038949 442.6009698509848 95.709 0.63349 99.617 99.319 99.953 3.9084 0.013972 -0.00016057 NaN 1.3296 155 87 2 NaN NaN NaN NaN 0 NaN NaN 0 222350 30396 11114 19329 19340 0.13328397305622275 PKAEMTLIP 9 Unmodified _PKAEMTLIP_ 0 0 0 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 MSMS UPN47_class_I_Rep_1 2 500.28173828125 2 500.280803 998.547053 NaN NaN NaN NaN NaN NaN NaN 34.713 1 38.399 37.899 38.899 3.6859 0 0 0 0.39598 1 6282 6282 1.6526 0.17072 1 30397 5411 19330 19341 35131 35131 0.04772168856698045 PKAGRDTTTK 10 Unmodified _PKAGRDTTTK_ 0 0 0 L1PA4_dup11384|chr19:34625135-34631273:+|1.5774337598829469|0.4879724625478261|1.69|150.0|41|1|sense L1PA4_dup11384|chr19:34625135-34631273:+|1.5774337598829469|0.4879724625478261|1.69|150.0|41|1|sense L1PA4_dup11384|chr19:34625135-34631273:+|1.5774337598829469|0.4879724625478261|1.69|150.0|41|1|sense MSMS UPN46_class_I_Rep_3 1 538.1616821289062 2 537.798737 1073.58292 NaN NaN NaN NaN NaN NaN NaN 12.037 1 12.037 11.537 12.537 0 0 0 0 0.53105 1 8 8 0 0 1 30398 14314 19331 19342 35132 35132 0.049073423578647635 PKAIIFLVTIC 11 Unmodified _PKAIIFLVTIC_ 0 0 0 REV__L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|25|3|sense REV__L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 406.5837707519531 3 406.582394 1216.72535 NaN NaN NaN NaN NaN NaN NaN 104.88 1 108.62 108.12 109.12 3.7395 0 0 0 0.38417 1 25755 25755 1.3296 0.63198 1 + 30399 27627 19332 19343 35133 35133 0.12565838775731208 PKAKGAPLAE 10 Unmodified _PKAKGAPLAE_ 0 0 0 REV__ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|46|2|anti-sense REV__ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_3 4 491.2900085449219 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 44.832 1 48.076 47.576 48.576 3.2441 0 0 0 0.53105 1 9439 9439 1.3295 0 1 + 30400 23244 19333 19344 35134 35134 0.07442046822893644 PKAKRKRSVK 10 Unmodified _PKAKRKRSVK_ 0 0 0 nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-5|MYO9A MSMS UPN47_class_I_Rep_2 3 599.4019165039062 2 599.398756 1196.78296 NaN NaN NaN NaN NaN NaN NaN 77.451 1 80.782 80.282 81.282 3.3315 0 0 0 0.53105 1 19212 19212 0.40072 0 1 30401 1026 19334 19345 35135 35135 0.19243861816153185 PKANAIKKK 9 Unmodified _PKANAIKKK_ 0 0 0 L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|190|3|sense L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|190|3|sense L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|190|3|sense MSMS UPN48_class_I_Rep_3 7 499.3280029296875 2 499.329476 996.6444 NaN NaN NaN NaN NaN NaN NaN 19.416 1 23.037 22.537 23.537 3.6215 0 0 0 0.4007 1 1460 1460 0.52476 0 1 30402 15146 19335 19346 35136 35136 0.1459431884783271 PKANTTKAK 9 Unmodified _PKANTTKAK_ 0 0 0 L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|24|2|sense L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|24|2|sense L1PB3_dup1162|chr6:2292818-2294180:+|9.435126704755849|0.0757298456817873|6.96|151.0|24|2|sense MSMS UPN47_class_I_Rep_2 3 479.787353515625 2 479.787641 957.56073 NaN NaN NaN NaN NaN NaN NaN 12.518 1 15.906 15.406 16.406 3.3885 0 0 0 0.4007 1 95 95 0.52476 0 1 30403 15244 19336 19347 35137 35137 0.08025162680121412 PKAPRKTTS 9 Unmodified _PKAPRKTTS_ 0 0 0 ENSG00000177352|ENST00000321895|CCDC71 ENSG00000177352|ENST00000321895|CCDC71 ENSG00000177352|ENST00000321895|CCDC71 MSMS UPN46_class_I_Rep_3 1 493.29229736328125 2 493.293091 984.571629 NaN NaN NaN NaN NaN NaN NaN 23.94 1 23.94 23.44 24.44 0 0 0 0 0.4007 1 3077 3077 0.52476 0.52476 1 30404 4787 19337 19348 35138 35138 0.07872565054424285 PKCADRPS 8 Unmodified _PKCADRPS_ 0 0 0 ENSG00000225614|ENST00000565624|ZNF469 ENSG00000225614|ENST00000565624|ZNF469 ENSG00000225614|ENST00000565624|ZNF469 MSMS UPN47_class_I_Rep_1 2 436.87933349609375 2 437.215995 872.417436 NaN NaN NaN NaN NaN NaN NaN 98.565 1 102.36 101.86 102.86 3.7926 0 0 0 0.40472 1 24398 24398 4.3292 0 1 30405 5660 19338 19349 35139 35139 -0.023875877026057424 PKCQKRKYF 9 Unmodified _PKCQKRKYF_ 0 0 0 REV__ENSG00000115461|ENST00000233813|IGFBP5 REV__ENSG00000115461|ENST00000233813|IGFBP5 MSMS UPN47_class_I_Rep_1 2 599.3291625976562 2 599.331693 1196.64883 NaN NaN NaN NaN NaN NaN NaN 68.265 1 71.629 71.129 72.129 3.3646 0 0 0 0.39598 1 16468 16468 1.6526 0.17072 1 + 30406 18564 19339 19350 35140 35140 0.05837459999111161 PKCSKSEK 8 Unmodified _PKCSKSEK_ 0 0 0 ENST00000480855.1_1_2:172299988-172306494:+|nuORF;ENST00000468592.5_1_2:172300063-172325523:+|nuORF;ENSG00000115827|ENST00000375255|DCAF17 ENST00000480855.1_1_2:172299988-172306494:+|nuORF ENST00000480855.1_1_2:172299988-172306494:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 453.7397766113281 2 453.739302 905.464052 0.17224 7.8152E-05 0.82205 0.000373 0.99429 0.00045115 453.73957222399935 104.54 0.25184 108.26 108.2 108.45 3.7192 59 35 2 0 0 0 0.82752 1 24701 24701 5.2307 0.90143 1 6644300 30407 2143 19340 19351 35141 35141 0.007538521286846844 PKDIKEDKR 9 Unmodified _PKDIKEDKR_ 0 0 0 L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|5|1|sense L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|5|1|sense L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 564.8222045898438 2 564.822212 1127.62987 NaN NaN NaN NaN NaN NaN NaN 85.868 1 85.868 85.368 86.368 0 0 0 0 0.39518 1 20509 20509 1.8442 0 1 30408 13796 19341 19352 35142 35142 0.07116201909025222 PKDKGRSTI 9 Unmodified _PKDKGRSTI_ 0 0 0 REV__nc|ENSG00000136238|P63000-2|RAC1 REV__nc|ENSG00000136238|P63000-2|RAC1 MULTI-MSMS UPN46_class_I_Rep_3 1 501.2905578613281 2 501.290548 1000.56654 0.31107 0.00015594 0.23766 0.00011914 0.54873 0.00027507 501.29055340443256 93.484 0.41895 93.484 93.408 93.827 0 72 41 2 0 0 0 0.43153 1 22680 22680 6.2058 6.2058 1 540310 + 30409 31988 19342 19353 35143 35143 0.06628261191815454 PKDKGRSTI 9 Unmodified _PKDKGRSTI_ 0 0 0 REV__nc|ENSG00000136238|P63000-2|RAC1 REV__nc|ENSG00000136238|P63000-2|RAC1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 501.290548 1000.56654 0.28114 0.00014093 -0.024577 -1.232E-05 0.25656 0.00012861 501.2904604715281 89.964 0.67176 93.654 93.372 94.044 3.6899 0.27865 -2.8405E-05 NaN 6.2058 158 90 2 NaN NaN NaN NaN 0 NaN NaN 0 232180 + 30410 31988 19342 19353 0.06628261191815454 PKDKGRSTI 9 Unmodified _PKDKGRSTI_ 0 0 0 REV__nc|ENSG00000136238|P63000-2|RAC1 REV__nc|ENSG00000136238|P63000-2|RAC1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 501.290548 1000.56654 0.36132 0.00018113 -0.11338 -5.6838E-05 0.24794 0.00012429 501.29037374088176 90.044 0.61473 93.501 93.199 93.814 3.4571 0.12531 -0.00011744 NaN 6.2058 181 86 3 NaN NaN NaN NaN 0 NaN NaN 0 315830 + 30411 31988 19342 19353 0.06628261191815454 PKDKGRSTI 9 Unmodified _PKDKGRSTI_ 0 0 0 REV__nc|ENSG00000136238|P63000-2|RAC1 REV__nc|ENSG00000136238|P63000-2|RAC1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.290548 1000.56654 0.28569 0.00014321 0.065955 3.3063E-05 0.35165 0.00017628 501.29035362441425 89.776 0.040161 93.173 93.142 93.183 3.3976 -0.20216 6.236E-05 NaN 6.2058 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 37919 + 30412 31988 19342 19353 0.06628261191815454 PKDKGRSTI 9 Unmodified _PKDKGRSTI_ 0 0 0 REV__nc|ENSG00000136238|P63000-2|RAC1 REV__nc|ENSG00000136238|P63000-2|RAC1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 501.290548 1000.56654 0.20019 0.00010035 0.95614 0.0004793 1.1563 0.00057966 501.2909039237851 89.44 0.084679 93.065 92.991 93.076 3.6255 -0.31016 0.00095484 NaN 6.2058 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 52305 + 30413 31988 19342 19353 0.06628261191815454 PKDLKKRLM 9 Unmodified _PKDLKKRLM_ 0 0 0 ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 ENSG00000198742|ENST00000361368|SMURF1 ENSG00000198742|ENST00000361368|SMURF1 MSMS UPN46_class_I_Rep_3 1 564.8496704101562 2 564.849719 1127.68488 NaN NaN NaN NaN NaN NaN NaN 88.091 1 88.091 87.591 88.591 0 0 0 0 0.4007 1 21139 21139 0.52476 0 1 30414 5454 19343 19354 35144 35144 0.1261491717593799 PKDVKSRQ 8 Unmodified _PKDVKSRQ_ 0 0 0 REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|11|1|sense REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|11|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2774658203125 2 479.277441 956.540328 0.2649 0.00012696 -0.096582 -4.629E-05 0.16831 8.0669E-05 479.27725890056223 91.309 0.38176 91.309 91.042 91.424 0 91 32 4 0 0 0 0.82752 1 22073 22073 6.7232 0 1 1476300 + 30415 28940 19344 19355 35145 35145 0.060319920203255606 PKDVKSRQ 8 Unmodified _PKDVKSRQ_ 0 0 0 REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|11|1|sense REV__L1PA10_dup3745|chr9:105751086-105755276:+|1.394363044503548|0.1870081547969115|2.9|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.2774963378906 2 479.277441 956.540328 0.23134 0.00011088 -0.16611 -7.9614E-05 0.065231 3.1264E-05 479.2772646618646 87.586 0.64895 91.314 91.038 91.687 3.7279 188 75 3 0 0 0 0.82752 1 20856 20856 6.7232 0 1 798370 + 30416 28940 19344 19355 35146 35146 0.060319920203255606 PKDYLKAF 8 Unmodified _PKDYLKAF_ 0 0 0 L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|60|2|sense;L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|67|2|sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|60|2|sense L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|60|2|sense MSMS UPN46_class_I_Rep_3 1 491.27642822265625 2 491.273835 980.533118 NaN NaN NaN NaN NaN NaN NaN 43.425 1 43.425 42.925 43.925 0 0 0 0 0.40581 1 8669 8669 2.8892 0 1 30417 8529 19345 19356 35147 35147 0.04207259419888487 PKEDPSRIWR 10 Unmodified _PKEDPSRIWR_ 0 0 0 ENST00000344321.8_1_2:218937581-218939838:+|nuORF;nc|ENSG00000188282|Q6ZNE9-3|RUFY4 ENST00000344321.8_1_2:218937581-218939838:+|nuORF ENST00000344321.8_1_2:218937581-218939838:+|nuORF MSMS UPN47_class_I_Rep_2 3 642.34375 2 642.346386 1282.67822 NaN NaN NaN NaN NaN NaN NaN 83.996 1 87.408 86.908 87.908 3.4116 0 0 0 0.53105 1 20948 20948 6.2058 3.2105 1 30418 6253 19346 19357 35148 35148 0.04818695548942742 PKEDYLKELL 10 Unmodified _PKEDYLKELL_ 0 0 0 L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|128|2|sense L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|128|2|sense L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|128|2|sense MSMS UPN48_class_I_Rep_2 6 416.56854248046875 3 416.567578 1246.6809 NaN NaN NaN NaN NaN NaN NaN 104.25 1 107.95 107.45 108.45 3.6991 0 0 0 0.53105 1 24666 24666 5.4027 1.8157 1 30419 14126 19347 19358 35149 35149 0.06743106163253287 PKEMNTLST 9 Unmodified _PKEMNTLST_ 0 0 0 REV__AluSp_dup32481|chr12:14942873-14943167:-|1.3916937344374856|0.4291516980762497|1.7|151.0|9|3|sense REV__AluSp_dup32481|chr12:14942873-14943167:-|1.3916937344374856|0.4291516980762497|1.7|151.0|9|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 511.25750732421875 2 510.755149 1019.49575 0.099527 5.0834E-05 0.23528 0.00012017 0.33481 0.00017101 510.7549012321957 31.912 0.62593 31.912 31.557 32.183 0 78 43 3 0 0 0 0.48846 1 5435 5435 1.8442 0.19162 1 90261 + 30420 17105 19348 19359 35150 35150 -0.013221999080201385 PKEVPFLL 8 Unmodified _PKEVPFLL_ 0 0 0 Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|61|3|sense Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|61|3|sense Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|61|3|sense MSMS UPN47_class_I_Rep_3 4 471.7952575683594 2 471.786579 941.558604 NaN NaN NaN NaN NaN NaN NaN 51.233 1 54.449 53.949 54.949 3.2163 0 0 0 0.3903 1 11385 11385 11.64 0.81637 1 30421 553 19349 19360 35151 35151 0.0854873394232527 PKEVVTALS 9 Unmodified _PKEVVTALS_ 0 0 0 MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|54|3|anti-sense MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|54|3|anti-sense MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|54|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.2754821777344 2 472.276575 942.538597 NaN NaN NaN NaN NaN NaN NaN 47.075 1 50.711 50.211 51.211 3.6363 0 0 0 0.38784 1 9201 9201 3.5965 0.31518 1 30422 16090 19350 19361 35152 35152 0.06502938211713172 PKFCYWKR 8 Unmodified _PKFCYWKR_ 0 0 0 REV__MLT1H2_dup1685|chr5:177540377-177540795:+|1.132545696123629|0.3847683029502109|1.56|151.0|3|1|sense REV__MLT1H2_dup1685|chr5:177540377-177540795:+|1.132545696123629|0.3847683029502109|1.56|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 564.29443359375 2 564.294579 1126.57461 NaN NaN NaN NaN NaN NaN NaN 34.311 1 37.825 37.325 38.325 3.5144 0 0 0 0.40746 1 5469 5469 0.69038 0 1 + 30423 31760 19351 19362 35153 35153 0.016381169075657454 PKFEDFIDIDL 11 Unmodified _PKFEDFIDIDL_ 0 0 0 REV__L1MC4_dup18128|chr12:116110389-116111280:+|2.92090571864798|0.0234792236268863|6.96|151.0|65|3|anti-sense REV__L1MC4_dup18128|chr12:116110389-116111280:+|2.92090571864798|0.0234792236268863|6.96|151.0|65|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 451.63739013671875 3 451.230854 1350.67073 -0.024967 -1.1266E-05 0.16784 7.5735E-05 0.14288 6.447E-05 451.23083085266643 32.194 0.61233 32.194 31.881 32.493 0 75 46 2 0 0 0 22.551 1 5550 5550 1.1098 0.48293 1 89784 + 30424 26842 19352 19363 35154 35154 0.00942498438007533 PKFGRFCC 8 Unmodified _PKFGRFCC_ 0 0 0 REV__THE1B-int_dup3803|chr15:40013786-40015255:-|1.1933814776836111|0.3419852922231708|1.8|151.0|6|1|sense REV__THE1B-int_dup3803|chr15:40013786-40015255:-|1.1933814776836111|0.3419852922231708|1.8|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 479.22430419921875 2 479.225308 956.436063 NaN NaN NaN NaN NaN NaN NaN 19.535 1 22.932 22.432 23.432 3.3963 0 0 0 0.40738 1 1858 1858 0.79363 0 1 + 30425 32268 19353 19364 35155 35155 -0.043897493324038805 PKFGRFCC 8 Unmodified _PKFGRFCC_ 0 0 0 REV__THE1B-int_dup3803|chr15:40013786-40015255:-|1.1933814776836111|0.3419852922231708|1.8|151.0|6|1|sense REV__THE1B-int_dup3803|chr15:40013786-40015255:-|1.1933814776836111|0.3419852922231708|1.8|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.22479248046875 2 479.225308 956.436063 -0.71644 -0.00034334 -0.65894 -0.00031578 -1.3754 -0.00065911 479.22488614281286 19.296 0.37238 22.647 22.488 22.861 3.3514 55 40 2 0 0 0 0.82752 1 1797 1797 0.79363 0 1 39453 + 30426 32268 19353 19364 35156 35156 -0.043897493324038805 PKFHRFVY 8 Unmodified _PKFHRFVY_ 0 0 0 ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL MULTI-MSMS UPN47_class_I_Rep_1 2 547.8005981445312 2 547.300719 1092.58688 0.47466 0.00025978 -0.25617 -0.0001402 0.2185 0.00011958 547.3005236200062 82.72 0.23973 86.258 86.124 86.364 3.5386 40 27 2 0 0 0 0.82752 1 20670 20670 9.3474 0.75416 1 83194 30427 5763 19354 19365 35157 35157 0.04429476642280861 PKFHRFVY 8 Unmodified _PKFHRFVY_ 0 0 0 ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL MULTI-MSMS UPN47_class_I_Rep_3 4 547.2998657226562 2 547.300719 1092.58688 0.46671 0.00025543 0.1329 7.2735E-05 0.59961 0.00032817 547.300714549505 83.006 0.57545 86.343 86.132 86.707 3.337 110 67 2 0 0 0 0.82752 2 20777 20777;20889 9.3474 2.0582 1 133060 30428 5763 19354 19365 35158;35159 35158 0.04429476642280861 PKFNFLRFLS 10 Unmodified _PKFNFLRFLS_ 0 0 0 Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|39|1|anti-sense Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|39|1|anti-sense Charlie1a_dup187|chr1:70239770-70240572:-|1.107423614197775|0.0540644794535226|4.36|151.0|39|1|anti-sense MSMS UPN47_class_I_Rep_2 3 634.8616333007812 2 634.861141 1267.70773 NaN NaN NaN NaN NaN NaN NaN 102.7 1 106.22 105.72 106.72 3.5231 0 0 0 0.53105 1 24994 24994 1.4819 0 1 30429 461 19355 19366 35160 35160 0.08458259565077242 PKFTPQADSW 10 Unmodified _PKFTPQADSW_ 0 0 0 L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|33|3|sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|33|3|sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 588.7900390625 2 588.787838 1175.56112 NaN NaN NaN NaN NaN NaN NaN 70.564 1 74.082 73.582 74.582 3.5185 0 0 0 0.53105 1 16333 16333 4.897 0 1 30430 9081 19356 19367 35161 35161 -0.019634623906540583 PKGARGTR 8 Unmodified _PKGARGTR_ 0 0 0 ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron;nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1;ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|1|intron;ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|3|intron ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron MULTI-MSMS UPN47_class_I_Rep_2 3 421.7515869140625 2 421.751393 841.488233 -0.59154 -0.00024948 0.66221 0.00027929 0.07067 2.9805E-05 421.7515255277408 68.454 0.70886 71.723 71.507 72.216 3.2696 80 62 2 0 0 0 0.82752 1 16555 16555 0.69038 0 1 57892 30431 4525 19357 19368 35162 35162 0.061148733972345326 PKGARGTR 8 Unmodified _PKGARGTR_ 0 0 0 ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron;nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1;ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|1|intron;ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|3|intron ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron MSMS UPN47_class_I_Rep_2 3 421.7510070800781 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 67.464 1 70.727 70.227 71.227 3.2636 0 0 0 0.40746 1 16272 16272 0.69038 0 1 30432 4525 19357 19368 35163 35163 0.061148733972345326 PKGARRRRP 9 Unmodified _PKGARRRRP_ 0 0 0 nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957.16,SPATA13,chr13,+,I13.1,24286951,24288998|25|4.87|2|intron;ENSG00000182957|ENST00000382108|SPATA13 nc|ENSG00000228741|Q96N96|SPATA13 nc|ENSG00000228741|Q96N96|SPATA13 MSMS UPN48_class_I_Rep_3 7 547.3324584960938 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 92.832 1 96.711 96.211 97.211 3.8782 0 0 0 0.39518 1 22003 22003 1.8442 0.51471 1 30433 4978 19358 19369 35164 35164 0.13144695636560755 PKGARRRRP 9 Unmodified _PKGARRRRP_ 0 0 0 nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957.16,SPATA13,chr13,+,I13.1,24286951,24288998|25|4.87|2|intron;ENSG00000182957|ENST00000382108|SPATA13 nc|ENSG00000228741|Q96N96|SPATA13 nc|ENSG00000228741|Q96N96|SPATA13 MSMS UPN48_class_I_Rep_3 7 547.3331298828125 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 94.553 1 98.454 97.954 98.954 3.9016 0 0 0 0.39518 1 22407 22407 1.8442 0.36234 1 30434 4978 19358 19369 35165 35165 0.13144695636560755 PKGCVWKR 8 Unmodified _PKGCVWKR_ 0 0 0 REV__ENST00000405546.7_1_2:242612072-242612480:+|nuORF REV__ENST00000405546.7_1_2:242612072-242612480:+|nuORF MSMS UPN46_class_I_Rep_3 1 487.2749938964844 2 487.273647 972.532741 NaN NaN NaN NaN NaN NaN NaN 30.622 1 30.622 30.122 31.122 0 0 0 0 0.40625 1 5013 5013 2.3027 0.4585 1 + 30435 22171 19359 19370 35166 35166 0.04537561219046893 PKGEAKPKRR 10 Unmodified _PKGEAKPKRR_ 0 0 0 ENST00000552719.1_1_12:56209714-56216458:-|nuORF;ENSG00000135392|ENST00000678005|DNAJC14 ENST00000552719.1_1_12:56209714-56216458:-|nuORF ENST00000552719.1_1_12:56209714-56216458:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 583.8593139648438 2 583.859464 1165.70437 0.51063 0.00029813 -1.1788 -0.00068825 -0.66817 -0.00039012 583.8587004903318 89.445 0.45718 93.274 92.99 93.447 3.8293 86 54 2 0 0 0 0.56118 2 21207 21207;21242 2.9952 0.26005 1 156020 30436 2906 19360 19371 35167;35168 35167 0.1281500951106409 PKGGGGGG 8 Unmodified _PKGGGGGG_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 585.79248046875 1 586.29435 585.287074 0.31047 0.00018203 1.0681 0.00062619 1.3785 0.00080822 586.295173418338 53.283 0.067844 56.811 56.755 56.823 3.5278 6 5 2 0 0 0 0.72333 1 11925 11925 0 0 1 28572 30437 5117 19361 19372 35169 35169 -0.022158156392833916 PKGIGIRDLNR 11 Unmodified _PKGIGIRDLNR_ 0 0 0 L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|37|3|sense L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|37|3|sense L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|37|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.8699340820312 2 619.870028 1237.7255 0.65569 0.00040644 -1.2006 -0.0007442 -0.54489 -0.00033776 619.8692492638636 88.718 0.26215 88.718 88.645 88.907 0 33 27 2 0 0 0 0.67264 1 21359 21359 1.1933 0.79263 1 224430 30438 10412 19362 19373 35170 35170 0.11614974819917734 PKGIGIRDLNR 11 Unmodified _PKGIGIRDLNR_ 0 0 0 L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|37|3|sense L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|37|3|sense L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 619.8693237304688 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 87.836 1 91.492 90.992 91.992 3.6563 0 0 0 0.38417 1 21957 21957 1.1933 0.12188 1 30439 10412 19362 19373 35171 35171 0.11614974819917734 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 457.2644958496094 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 75.417 1 75.417 74.917 75.917 0 0 0 0 0.38639 1 17533 17533 3.9444 0.66309 1 30440 13006 19363 19374 35172 35172 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 457.2642822265625 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 75.783 1 75.783 75.283 76.283 0 0 0 0 0.38639 1 17642 17642 3.9444 0.66309 1 30441 13006 19363 19374 35173 35173 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 457.264404296875 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 75.916 1 75.916 75.416 76.416 0 0 0 0 0.38639 1 17679 17679 3.9444 0.66309 1 30442 13006 19363 19374 35174 35174 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 457.2641906738281 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.46869 1 18068 18068 3.9444 0.66309 1 317760 30443 13006 19363 19374 35175 35175 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.2642822265625 2 457.264333 912.514114 0.073621 3.3664E-05 0.075283 3.4424E-05 0.1489 6.8088E-05 457.264245092214 72.821 1.6651 76.294 75.47 77.135 3.4732 273 145 3 0 0 0 0.46869 2 17108 17108;17267 3.9444 0.3479 1 285570 30444 13006 19363 19374 35176;35177 35176 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.2643127441406 2 457.264333 912.514114 0.16319 7.4623E-05 0.010421 4.765E-06 0.17361 7.9388E-05 457.2641985747419 72.45 1.6171 76.015 75.426 77.043 3.5645 245 162 2 0 0 0 0.46869 1 17022 17022 3.9444 0.66309 1 245260 30445 13006 19363 19374 35178 35178 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 457.26446533203125 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 72.603 1 76.14 75.64 76.64 3.5373 0 0 0 0.38639 1 16933 16933 3.9444 0.66309 1 30446 13006 19363 19374 35179 35179 0.054357228488470355 PKGKAGKNN 9 Unmodified _PKGKAGKNN_ 0 0 0 L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 457.26434326171875 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 72.984 1 76.521 76.021 77.021 3.5373 0 0 0 0.38639 1 17052 17052 3.9444 0.66309 1 30447 13006 19363 19374 35180 35180 0.054357228488470355 PKGKGKKSTD 10 Unmodified _PKGKGKKSTD_ 0 0 0 REV__ENSG00000101115|ENST00000217086|SALL4 REV__ENSG00000101115|ENST00000217086|SALL4 MULTI-MSMS UPN48_class_I_Rep_1 5 523.677978515625 2 523.303655 1044.59276 0.31229 0.00016342 -0.14059 -7.3572E-05 0.1717 8.9852E-05 523.3034362618245 79.367 1.2897 82.902 82.116 83.406 3.5352 321 152 3 0 0 0 0.56155 1 18976 18976 2.7352 0.89096 1 421630 + 30448 18147 19364 19375 35181 35181 0.07224530363282611 PKGKKATS 8 Unmodified _PKGKKATS_ 0 0 0 REV__ENSG00000212123|ENST00000419421|PRR22 REV__ENSG00000212123|ENST00000419421|PRR22 MULTI-MSMS UPN46_class_I_Rep_3 1 408.7510070800781 2 408.750527 815.486502 0.066084 2.7012E-05 1.172 0.00047907 1.2381 0.00050608 408.75091710548 107.89 0.36189 107.89 107.81 108.17 0 55 28 4 0 0 0 0.82752 1 26306 26306 3.9444 0 1 100020000 + 30449 21235 19365 19376 35182 35182 0.07137819588615457 PKGKKDRE 8 Unmodified _PKGKKDRE_ 0 0 0 nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH nc|ENSG00000198363|Q12797-4|ASPH nc|ENSG00000198363|Q12797-4|ASPH MULTI-MSMS UPN47_class_I_Rep_1 2 479.27734375 2 479.277441 956.540328 0.11705 5.6102E-05 -0.23064 -0.00011054 -0.11359 -5.4441E-05 479.2771831640305 73.243 1.1706 76.629 75.892 77.063 3.3861 121 91 2 0 0 0 0.82752 1 17915 17915 2.0598 0 1 114560 30450 16800 19366 19377 35183 35183 0.06031992020314192 PKGKKDRE 8 Unmodified _PKGKKDRE_ 0 0 0 nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH nc|ENSG00000198363|Q12797-4|ASPH nc|ENSG00000198363|Q12797-4|ASPH MULTI-MSMS UPN47_class_I_Rep_1 2 479.2778015136719 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.82752 1 18380 18380 2.3027 0 1 595600 30451 16800 19366 19377 35184 35184 0.06031992020314192 PKGKPKSGRVW 11 Unmodified _PKGKPKSGRVW_ 0 0 0 ENSG00000110104|ENST00000227520|CCDC86 ENSG00000110104|ENST00000227520|CCDC86 ENSG00000110104|ENST00000227520|CCDC86 MSMS UPN48_class_I_Rep_1 5 620.3724975585938 2 620.369664 1238.72478 NaN NaN NaN NaN NaN NaN NaN 87.89 1 91.508 91.008 92.008 3.6187 0 0 0 0.38417 1 21072 21072 1.0715 0 1 30452 1930 19367 19378 35185 35185 0.11496180170888692 PKGKQKTNG 9 Unmodified _PKGKQKTNG_ 0 0 0 REV__L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|17|3|sense REV__L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.2774353027344 2 479.277441 956.540328 0.26784 0.00012837 1.3621 0.00065283 1.63 0.0007812 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.44742 1 17626 17626 5.2969 0.54088 1 496720 + 30453 28307 19368 19379 35186 35186 0.06031992020314192 PKGLCLVRHGV 11 Unmodified _PKGLCLVRHGV_ 0 0 0 REV__SVA_C_dup240|chrX:97274642-97276308:-|2.156874412362902|0.0414959857388576|5.7|151.0|41|3|sense REV__SVA_C_dup240|chrX:97274642-97276308:-|2.156874412362902|0.0414959857388576|5.7|151.0|41|3|sense MSMS UPN47_class_I_Rep_1 2 589.8447265625 2 589.844968 1177.67538 NaN NaN NaN NaN NaN NaN NaN 83.729 1 87.294 86.794 87.794 3.5655 0 0 0 0.38417 1 20946 20946 1.1933 0 1 + 30454 32191 19369 19380 35187 35187 0.09365148890401542 PKGLGVCVP 9 Unmodified _PKGLGVCVP_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS UPN48_class_I_Rep_2 6 435.2510681152344 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 70.84 1 74.376 73.876 74.876 3.5359 0 0 0 0.38299 1 16498 16498 4.756 0.42677 1 + 30455 19290 19370 19381 35188 35188 0.04455647859288092 PKGPIRLY 8 Unmodified _PKGPIRLY_ 0 0 0 REV__L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|73|3|sense REV__L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|73|3|sense MSMS UPN47_class_I_Rep_3 4 472.2878723144531 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 107.49 1 111.02 110.52 111.52 3.5382 0 0 0 0.40404 1 26246 26246 5.2307 0 1 + 30456 24109 19371 19382 35189 35189 0.09150671893689832 PKGPRSRA 8 Unmodified _PKGPRSRA_ 0 0 0 ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 434.75921630859375 2 434.759218 867.503883 0.13425 5.8367E-05 -0.21978 -9.5551E-05 -0.085526 -3.7183E-05 434.75909048144774 81.765 0.98801 81.765 81.42 82.408 0 207 92 4 0 0 0 0.82752 3 19318 19318;19356;19393 4.756 0 1 1659500 30457 6494 19372 19383 35190;35191;35192 35190 0.06483159914273529 PKGPRSRA 8 Unmodified _PKGPRSRA_ 0 0 0 ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 434.7590637207031 2 434.759218 867.503883 0.05097 2.216E-05 -0.27646 -0.00012019 -0.22549 -9.8035E-05 434.7590411553815 78.565 0.76173 82.01 81.662 82.423 3.4456 163 73 3 0 0 0 0.82752 2 19502 19502;19538 4.756 0 1 458340 30458 6494 19372 19383 35193;35194 35193 0.06483159914273529 PKGPRSRA 8 Unmodified _PKGPRSRA_ 0 0 0 ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 434.7591857910156 2 434.759218 867.503883 -0.028552 -1.2413E-05 -0.2076 -9.0255E-05 -0.23615 -0.00010267 434.759106550754 78.357 0.78268 81.879 81.527 82.309 3.5221 187 97 3 0 0 0 0.82752 2 18674 18674;18735 4.756 0 1 561780 30459 6494 19372 19383 35195;35196 35195 0.06483159914273529 PKGPRSRA 8 Unmodified _PKGPRSRA_ 0 0 0 ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF ENST00000381298.6_1_5:55290715-55290820:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 434.75909423828125 2 434.759218 867.503883 0.096146 4.18E-05 -0.26027 -0.00011315 -0.16412 -7.1353E-05 434.75904878080854 78.268 0.69221 81.89 81.553 82.246 3.6222 189 80 3 0 0 0 0.82752 1 18563 18563 4.756 0 1 592690 30460 6494 19372 19383 35197 35197 0.06483159914273529 PKGQNRGL 8 Unmodified _PKGQNRGL_ 0 0 0 L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.2509460449219 2 435.251226 868.487899 -0.011424 -4.9724E-06 -0.6377 -0.00027756 -0.64913 -0.00028253 435.25083879887944 67.953 0.80317 71.317 70.91 71.713 3.3646 87 60 2 0 0 0 0.82752 1 16429 16429 2.3027 0 1 81444 30461 14780 19373 19384 35198 35198 0.048394536773685104 PKGQNRGL 8 Unmodified _PKGQNRGL_ 0 0 0 L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 435.25103759765625 2 435.251226 868.487899 -0.4012 -0.00017462 -0.15926 -6.9317E-05 -0.56046 -0.00024394 435.25102546217005 71.164 1.8647 74.382 72.91 74.775 3.2188 221 159 2 0 0 0 0.82752 1 17249 17249 2.3027 0 1 332500 30462 14780 19373 19384 35199 35199 0.048394536773685104 PKGQNRGL 8 Unmodified _PKGQNRGL_ 0 0 0 L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|37|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 435.25091552734375 2 435.251226 868.487899 -0.01274 -5.5453E-06 -0.48251 -0.00021001 -0.49525 -0.00021556 435.2509537952896 71.723 1.0498 75.189 74.866 75.916 3.466 124 95 2 0 0 0 0.82752 1 16947 16947 0.69038 0 1 162610 30463 14780 19373 19384 35200 35200 0.048394536773685104 PKGRGPRT 8 Unmodified _PKGRGPRT_ 0 0 0 REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 434.7591247558594 2 434.759218 867.503883 -0.32755 -0.00014241 0.15386 6.6891E-05 -0.17369 -7.5515E-05 434.75924157931956 78.604 0.81432 81.947 81.587 82.401 3.3428 185 87 3 0 0 0 0.82752 1 19509 19509 4.756 0 1 535310 + 30464 22226 19374 19385 35201 35201 0.06483159914284897 PKGRGPRT 8 Unmodified _PKGRGPRT_ 0 0 0 REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 434.7590026855469 2 434.759218 867.503883 -0.38752 -0.00016848 0.21995 9.5627E-05 -0.16757 -7.2853E-05 434.7592732344153 78.651 0.87901 81.933 81.554 82.433 3.2816 204 89 3 0 0 0 0.82752 1 19656 19656 4.756 0 1 630560 + 30465 22226 19374 19385 35202 35202 0.06483159914284897 PKGRQPRC 8 Unmodified _PKGRQPRC_ 0 0 0 L1MB3_dup10754|chr11:628048-628757:-|1.456939088834208|0.3317360159454439|2.13|151.0|7|2|sense L1MB3_dup10754|chr11:628048-628757:-|1.456939088834208|0.3317360159454439|2.13|151.0|7|2|sense L1MB3_dup10754|chr11:628048-628757:-|1.456939088834208|0.3317360159454439|2.13|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 471.2598876953125 2 471.258528 940.502503 NaN NaN NaN NaN NaN NaN NaN 62.99 1 62.99 62.49 63.49 0 0 0 0 0.40404 1 14119 14119 5.2307 0 1 30466 10318 19375 19386 35203 35203 0.02987202553856605 PKGRVTTR 8 Unmodified _PKGRVTTR_ 0 0 0 REV__Charlie25_dup745|chr11:45950885-45951807:-|1.0035489381766134|0.1300268974141624|2.95|151.0|36|3|sense REV__Charlie25_dup745|chr11:45950885-45951807:-|1.0035489381766134|0.1300268974141624|2.95|151.0|36|3|sense MSMS UPN48_class_I_Rep_2 6 457.7800598144531 2 457.780151 913.545748 NaN NaN NaN NaN NaN NaN NaN 81.286 1 84.943 84.443 85.443 3.6567 0 0 0 0.40501 1 19291 19291 3.9444 0 1 + 30467 17368 19376 19387 35204 35204 0.08551715602789045 PKGSALRNA 9 Unmodified _PKGSALRNA_ 0 0 0 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 MULTI-MSMS UPN47_class_I_Rep_3 4 457.2642822265625 2 457.264333 912.514114 -0.15313 -7.0019E-05 0.21208 9.6978E-05 0.058957 2.6959E-05 457.2643294104242 73.093 1.9641 76.32 75.19 77.155 3.2271 308 175 3 0 0 0 0.47197 3 17866 17866;18091;18174 3.5965 0.60125 1 325030 30468 16679 19377 19388 35205;35206;35207 35205 0.05435722848835667 PKGSALRNA 9 Unmodified _PKGSALRNA_ 0 0 0 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 MULTI-MSMS UPN48_class_I_Rep_1 5 457.2645263671875 2 457.264333 912.514114 0.073621 3.3664E-05 0.075283 3.4424E-05 0.1489 6.8088E-05 457.264245092214 72.821 1.6651 76.294 75.47 77.135 3.4732 273 145 3 0 0 0 0.47197 3 16952 16915;16952;17188 3.5965 0.60125 1 285570 30469 16679 19377 19388 35208;35209;35210 35209 0.05435722848835667 PKGSALRNA 9 Unmodified _PKGSALRNA_ 0 0 0 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 nc|ENSG00000125675|P42263|GRIA3 MULTI-MSMS UPN48_class_I_Rep_3 7 457.2641906738281 2 457.264333 912.514114 0.23289 0.00010649 -0.1778 -8.1302E-05 0.055086 2.5189E-05 457.26412247260816 72.237 1.4525 75.763 75.254 76.706 3.5266 245 134 3 0 0 0 0.47197 1 16752 16752 3.5965 0.31518 1 287280 30470 16679 19377 19388 35211 35211 0.05435722848835667 PKGSIKRN 8 Unmodified _PKGSIKRN_ 0 0 0 REV__L1MEc_dup14101|chr13:21452372-21453737:+|5.054990913070566|0.0325567613611099|7.28|151.0|55|3|sense REV__L1MEc_dup14101|chr13:21452372-21453737:+|5.054990913070566|0.0325567613611099|7.28|151.0|55|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 450.27484130859375 2 450.274701 898.534849 0.16564 7.4583E-05 -0.85964 -0.00038708 -0.694 -0.00031249 450.2747255758979 110.97 0.20405 114.64 114.6 114.81 3.6654 37 24 2 0 0 0 0.82752 1 26337 26337 0.69038 0 1 219870 + 30471 28375 19378 19389 35212 35212 0.08152313228504227 PKGTERDY 8 Unmodified _PKGTERDY_ 0 0 0 REV__nc|ENSG00000101811|P33240-2|CSTF2 REV__nc|ENSG00000101811|P33240-2|CSTF2 MSMS UPN46_class_I_Rep_3 1 482.7955017089844 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 31.631 1 31.631 31.131 32.131 0 0 0 0 0.40604 1 5311 5311 2.5775 0.27475 1 + 30472 18175 19379 19390 35213 35213 -0.022242800046228695 PKGTQTTP 8 Unmodified _PKGTQTTP_ 0 0 0 REV__L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|30|2|sense REV__L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|30|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 415.22381591796875 2 415.224342 828.434132 0.060482 2.5114E-05 -0.96 -0.00039862 -0.89952 -0.0003735 415.22377616251185 79.173 0.43085 79.173 78.914 79.344 0 61 41 3 0 0 0 0.82752 1 18585 18585 2.0598 0 1 221200 + 30473 28468 19380 19391 35214 35214 0.013052364549935191 PKGTQTTP 8 Unmodified _PKGTQTTP_ 0 0 0 REV__L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|30|2|sense REV__L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|30|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 415.224342 828.434132 -0.63895 -0.00026531 -0.63535 -0.00026381 -1.2743 -0.00052912 415.2240645466259 75.982 0.39331 79.239 79.12 79.513 3.2573 0.01296 0.00029612 NaN 2.0598 46 36 2 NaN NaN NaN NaN 0 NaN NaN 0 47911 + 30474 28468 19380 19391 0.013052364549935191 PKGTQTTP 8 Unmodified _PKGTQTTP_ 0 0 0 REV__L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|30|2|sense REV__L1MEc_dup6513|chr5:154303060-154305021:+|1.0343807678538648|0.0701934909979661|3.88|151.0|30|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 415.224342 828.434132 0.14349 5.9579E-05 -1.4602 -0.0006063 -1.3167 -0.00054673 415.22369346318845 75.702 0.46953 79.267 79.047 79.517 3.5658 0.040928 -0.00038886 NaN 2.0598 66 49 2 NaN NaN NaN NaN 0 NaN NaN 0 75792 + 30475 28468 19380 19391 0.013052364549935191 PKGTVSRVN 9 Unmodified _PKGTVSRVN_ 0 0 0 L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|34|1|sense L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|34|1|sense L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|34|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2772216796875 2 479.277441 956.540328 0.13854 6.6398E-05 -0.25052 -0.00012007 -0.11198 -5.3671E-05 479.2771390928401 76.664 0.60101 80.079 79.988 80.589 3.4149 73 56 2 0 0 0 0.49026 1 18986 18986 1.6526 1.6526 1 543510 30476 15383 19381 19392 35215 35215 0.060319920203255606 PKGVAHSR 8 Unmodified _PKGVAHSR_ 0 0 0 LTR17_dup800|chr19:38689885-38690646:+|1.1132494135118527|0.0472956476678073|4.56|151.0|38|2|anti-sense LTR17_dup800|chr19:38689885-38690646:+|1.1132494135118527|0.0472956476678073|4.56|151.0|38|2|anti-sense LTR17_dup800|chr19:38689885-38690646:+|1.1132494135118527|0.0472956476678073|4.56|151.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 426.24603271484375 2 426.245944 850.477334 0.077215 3.2912E-05 -0.0011648 -4.9647E-07 0.07605 3.2416E-05 426.24592223851135 78.227 0.77901 81.85 81.533 82.312 3.6222 216 91 3 0 0 0 0.82752 1 18505 18505 2.0598 0 1 799010 30477 15582 19382 19393 35216 35216 0.0461147102294035 PKGVAHSR 8 Unmodified _PKGVAHSR_ 0 0 0 LTR17_dup800|chr19:38689885-38690646:+|1.1132494135118527|0.0472956476678073|4.56|151.0|38|2|anti-sense LTR17_dup800|chr19:38689885-38690646:+|1.1132494135118527|0.0472956476678073|4.56|151.0|38|2|anti-sense LTR17_dup800|chr19:38689885-38690646:+|1.1132494135118527|0.0472956476678073|4.56|151.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 426.2459716796875 2 426.245944 850.477334 0.16102 6.8632E-05 -0.11172 -4.762E-05 0.049296 2.1012E-05 426.2458741817482 78.249 0.80693 81.87 81.514 82.321 3.6216 218 97 3 0 0 0 0.82752 1 18464 18464 2.0598 0 1 943270 30478 15582 19382 19393 35217 35217 0.0461147102294035 PKGVVHRG 8 Unmodified _PKGVVHRG_ 0 0 0 REV__MLT1G_dup2491|chr19:6794734-6795133:-|1.089544167204999|0.0042610830809761|8.0|151.0|7|2|sense REV__MLT1G_dup2491|chr19:6794734-6795133:-|1.089544167204999|0.0042610830809761|8.0|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 425.2565002441406 2 425.256311 848.49807 NaN NaN NaN NaN NaN NaN NaN 107.39 1 111.02 110.52 111.52 3.6299 0 0 0 0.40746 1 25889 25889 0.69038 0 1 + 30479 31725 19383 19394 35218 35218 0.06776061402615596 PKHARTFVVF 10 Unmodified _PKHARTFVVF_ 0 0 0 ENST00000409714.7_1_2:170460711-170470975:+|nuORF ENST00000409714.7_1_2:170460711-170470975:+|nuORF ENST00000409714.7_1_2:170460711-170470975:+|nuORF MSMS UPN46_class_I_Rep_3 1 601.345947265625 2 601.345658 1200.67676 NaN NaN NaN NaN NaN NaN NaN 54.978 1 54.978 54.478 55.478 0 0 0 0 0.53105 1 11933 11933 1.6526 0.32309 1 30480 6625 19384 19395 35219 35219 0.08445106250815115 PKHFIPFD 8 Unmodified _PKHFIPFD_ 0 0 0 L1MB2_dup6045|chr12:66164604-66165418:+|2.6292189779183137|0.2987472270758936|3.14|151.0|30|1|anti-sense L1MB2_dup6045|chr12:66164604-66165418:+|2.6292189779183137|0.2987472270758936|3.14|151.0|30|1|anti-sense L1MB2_dup6045|chr12:66164604-66165418:+|2.6292189779183137|0.2987472270758936|3.14|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_3 7 500.766845703125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 113.68 1 117.34 116.84 117.84 3.6568 0 0 0 0.40746 1 27038 27038 0.69038 0 1 30481 10269 19385 19396 35220 35220 0.018023926226987896 PKHIVPLI 8 Unmodified _PKHIVPLI_ 0 0 0 HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|210|1|anti-sense HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|210|1|anti-sense HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|210|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 459.1717834472656 2 458.802563 915.590573 -0.010976 -5.0357E-06 -1.1984 -0.00054983 -1.2094 -0.00055486 458.8027013121981 31.86 0.19339 31.86 31.722 31.915 0 22 14 2 0 0 0 0.72333 1 5371 5371 2.3027 1.6124 1 61753 30482 8070 19386 19397 35221 35221 0.12940146416133302 PKHIVPLI 8 Unmodified _PKHIVPLI_ 0 0 0 HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|210|1|anti-sense HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|210|1|anti-sense HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|210|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 458.802563 915.590573 -0.46118 -0.00021159 1.0024 0.0004599 0.54122 0.00024831 458.80436275985164 28.481 0.060493 31.98 31.95 32.01 3.4986 0.060119 0.0016633 NaN 2.3027 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 16703 30483 8070 19386 19397 0.12940146416133302 PKHPDSIFNN 10 Unmodified _PKHPDSIFNN_ 0 0 0 REV__ENSG00000122482.21,ZNF644,chr1,-,I8.1,90935529,90937484|32|6.89|2|intron REV__ENSG00000122482.21,ZNF644,chr1,-,I8.1,90935529,90937484|32|6.89|2|intron MSMS UPN47_class_I_Rep_2 3 584.7890014648438 2 584.790912 1167.56727 NaN NaN NaN NaN NaN NaN NaN 15.185 1 18.571 18.071 19.071 3.3864 0 0 0 0.53105 1 751 751 1.4819 0 1 + 30484 18749 19387 19398 35222 35222 -0.009809441591414725 PKHPFLRP 8 Unmodified _PKHPFLRP_ 0 0 0 REV__ENST00000528125.5_1_11:111749700-111753141:+|nuORF REV__ENST00000528125.5_1_11:111749700-111753141:+|nuORF MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.295436 990.57632 NaN NaN NaN NaN NaN NaN NaN 32.803 1 32.803 32.303 33.303 0 0 0 0 0.40746 1 5659 5659 0.69038 0 1 + 30485 22827 19388 19399 35223 35223 0.0806549398784 PKHRHLVA 8 Unmodified _PKHRHLVA_ 0 0 0 REV__nc|ENSG00000152818|P46939-2|UTRN REV__nc|ENSG00000152818|P46939-2|UTRN MSMS UPN47_class_I_Rep_2 3 479.288330078125 2 479.290685 956.566818 NaN NaN NaN NaN NaN NaN NaN 16.524 1 19.91 19.41 20.41 3.3864 0 0 0 0.40746 1 1073 1073 0.69038 0 1 + 30486 19694 19389 19400 35224 35224 0.0867972570231359 PKHSLSLVFG 10 Unmodified _PKHSLSLVFG_ 0 0 0 REV__Tigger13a_dup395|chr2:143387965-143388567:+|1.5225386718044214|0.0057163748450388|8.06|151.0|37|3|anti-sense REV__Tigger13a_dup395|chr2:143387965-143388567:+|1.5225386718044214|0.0057163748450388|8.06|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_3 4 542.8115234375 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 49.144 1 52.379 51.879 52.879 3.2345 0 0 0 0.53105 1 10747 10747 3.2813 0.28607 1 + 30487 32588 19390 19401 35225 35225 0.06922022231287883 PKHVKALL 8 Unmodified _PKHVKALL_ 0 0 0 nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT nc|ENSG00000160299|O95613-2|PCNT nc|ENSG00000160299|O95613-2|PCNT MSMS UPN47_class_I_Rep_3 4 453.2999267578125 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 25.464 1 28.815 28.315 29.315 3.3509 0 0 0 0.40625 1 3584 3584 2.3027 1.6124 1 30488 3867 19391 19402 35226 35226 0.12971262273367756 PKIFVVVKGPQ 11 Unmodified _PKIFVVVKGPQ_ 0 0 0 REV__ENSG00000173221|ENST00000237858|GLRX REV__ENSG00000173221|ENST00000237858|GLRX MSMS UPN46_class_I_Rep_3 1 404.5904846191406 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 43.039 1 43.039 42.539 43.539 0 0 0 0 0.38417 1 8561 8561 0.40827 0 1 + 30489 20478 19392 19403 35227 35227 0.14683716741956232 PKIFVVVKGPQ 11 Unmodified _PKIFVVVKGPQ_ 0 0 0 REV__ENSG00000173221|ENST00000237858|GLRX REV__ENSG00000173221|ENST00000237858|GLRX MSMS UPN48_class_I_Rep_3 7 404.58892822265625 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 36.405 1 40.072 39.572 40.572 3.6667 0 0 0 0.38417 1 6022 6022 0.45452 0 1 + 30490 20478 19392 19403 35228 35228 0.14683716741956232 PKIFYPET 8 Unmodified _PKIFYPET_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2;IQGAP1|p.V531Wfs*10|1|0.03|ENSG00000140575|chr15:90454530-90454530|G/-|frameshift_variant ENSG00000140575|ENST00000268182|IQGAP1 MSMS UPN48_class_I_Rep_2 6 497.7660827636719 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 25.996 1 29.63 29.13 30.13 3.6332 0 0 0 0.40746 1 3248 3248 0.69038 0 1 30491 3184;3407;8463 19393 19404 35229 35229 0.02011553182978787 PKIIIGRNW 9 Unmodified _PKIIIGRNW_ 0 0 0 MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|20|3|sense MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|20|3|sense MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 548.8353881835938 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 32.959 1 32.959 32.459 33.459 0 0 0 0 0.4007 1 5706 5706 0.52476 0 1 30492 16050 19394 19405 35230 35230 0.1112972122211886 PKIKFHLGIL 10 Unmodified _PKIKFHLGIL_ 0 0 0 REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 583.377197265625 2 583.376426 1164.7383 0.48686 0.00028402 0.95706 0.00055832 1.4439 0.00084235 583.3769157654594 46.292 0.16431 46.292 46.221 46.385 0 25 18 3 0 0 0 0.56309 1 9497 9497 1.6526 0 1 423780 + 30493 18448 19395 19406 35231 35231 0.16252037950107479 PKIKFHLGIL 10 Unmodified _PKIKFHLGIL_ 0 0 0 REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 583.376953125 2 583.376426 1164.7383 0.47536 0.00027731 1.2058 0.00070343 1.6812 0.00098075 583.3770537899163 48.687 0.029907 48.687 48.66 48.69 0 6 2 3 0 0 0 0.56309 1 10165 10165 1.6526 0 1 383050 + 30494 18448 19395 19406 35232 35232 0.16252037950107479 PKIKFHLGIL 10 Unmodified _PKIKFHLGIL_ 0 0 0 REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF MSMS UPN46_class_I_Rep_3 1 583.3771362304688 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 46.604 1 46.604 46.104 47.104 0 0 0 0 0.53105 1 9567 9567 1.6526 0 1 + 30495 18448 19395 19406 35233 35233 0.16252037950107479 PKIKFHLGIL 10 Unmodified _PKIKFHLGIL_ 0 0 0 REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF MSMS UPN46_class_I_Rep_3 1 583.3770751953125 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 46.797 1 46.797 46.297 47.297 0 0 0 0 0.53105 1 9622 9622 1.6526 0 1 + 30496 18448 19395 19406 35234 35234 0.16252037950107479 PKIKFHLGIL 10 Unmodified _PKIKFHLGIL_ 0 0 0 REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF MSMS UPN46_class_I_Rep_3 1 583.3772583007812 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 47.042 1 47.042 46.542 47.542 0 0 0 0 0.53105 1 9695 9695 1.6526 0 1 + 30497 18448 19395 19406 35235 35235 0.16252037950107479 PKIKFHLGIL 10 Unmodified _PKIKFHLGIL_ 0 0 0 REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 583.377197265625 2 583.376426 1164.7383 0.046076 2.688E-05 1.4557 0.00084921 1.5018 0.00087609 583.3771128982273 41.642 0.20211 44.879 44.794 44.996 3.2372 25 18 3 0 0 0 0.56309 1 8472 8472 1.6526 1.0511 1 283750 + 30498 18448 19395 19406 35236 35236 0.16252037950107479 PKILKIRA 8 Unmodified _PKILKIRA_ 0 0 0 L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|147|3|sense L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|147|3|sense L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|147|3|sense MSMS UPN48_class_I_Rep_3 7 469.83062744140625 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 90.864 1 94.711 94.211 95.211 3.847 0 0 0 0.40625 1 21548 21548 2.3027 0 1 30499 14529 19396 19407 35237 35237 0.17235524198792973 PKIRRRRP 8 Unmodified _PKIRRRRP_ 0 0 0 REV__ENSG00000196074|ENST00000357552|SYCP2 REV__ENSG00000196074|ENST00000357552|SYCP2 MSMS UPN48_class_I_Rep_1 5 539.8572387695312 2 539.857058 1077.69956 NaN NaN NaN NaN NaN NaN NaN 108.1 1 111.73 111.23 112.23 3.6313 0 0 0 0.40604 1 26122 26122 2.5775 0 1 + 30500 21012 19397 19408 35238 35238 0.16382170158976805 PKIRRRRP 8 Unmodified _PKIRRRRP_ 0 0 0 REV__ENSG00000196074|ENST00000357552|SYCP2 REV__ENSG00000196074|ENST00000357552|SYCP2 MULTI-MSMS UPN48_class_I_Rep_2 6 539.8576049804688 2 539.857058 1077.69956 0.47196 0.00025479 0.6414 0.00034627 1.1134 0.00060106 539.857174212274 108.21 0.36975 111.88 111.72 112.09 3.6746 70 41 2 0 0 0 0.82752 1 25602 25602 2.5775 0 1 4550700 + 30501 21012 19397 19408 35239 35239 0.16382170158976805 PKIRRRRP 8 Unmodified _PKIRRRRP_ 0 0 0 REV__ENSG00000196074|ENST00000357552|SYCP2 REV__ENSG00000196074|ENST00000357552|SYCP2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 539.857058 1077.69956 0.58824 0.00031756 0.14057 7.5888E-05 0.72881 0.00039345 539.8569003705189 108.42 0.055191 111.95 111.94 111.99 3.5333 0.046171 -0.00053618 NaN 2.5775 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1265800 + 30502 21012 19397 19408 0.16382170158976805 PKIRRRRP 8 Unmodified _PKIRRRRP_ 0 0 0 REV__ENSG00000196074|ENST00000357552|SYCP2 REV__ENSG00000196074|ENST00000357552|SYCP2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 539.857058 1077.69956 0.37252 0.00020111 1.203 0.00064947 1.5756 0.00085058 539.8570949597471 108.25 0.1487 111.88 111.78 111.93 3.6313 -0.022171 0.00061099 NaN 2.5775 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 911820 + 30503 21012 19397 19408 0.16382170158976805 PKIYGVVY 8 Unmodified _PKIYGVVY_ 0 0 0 REV__ENST00000414296.2_1_7:29736649-29749689:+|nuORF REV__ENST00000414296.2_1_7:29736649-29749689:+|nuORF MSMS UPN48_class_I_Rep_3 7 469.76934814453125 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 34.861 1 38.534 38.034 39.034 3.6721 0 0 0 0.40604 1 5584 5584 2.5775 0.27475 1 + 30504 22207 19398 19409 35240 35240 0.05604160908239919 PKKAPAKK 8 Unmodified _PKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF;ENST00000446054.1_1_7:84506012-84506255:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MSMS UPN47_class_I_Rep_1 2 434.2921142578125 2 434.292362 866.570172 0.02932 1.2734E-05 -0.17993 -7.8141E-05 -0.15061 -6.5407E-05 434.2921706810367 62.476 0.21559 65.844 65.733 65.949 3.3681 16 10 2 0 0 0 0.82752 1 14723 14723 2.3027 0 1 370520 30505 5469 19399 19410 35241 35241 0.13154975756310705 PKKAPAKK 8 Unmodified _PKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF;ENST00000446054.1_1_7:84506012-84506255:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MSMS UPN47_class_I_Rep_2 3 434.2920227050781 2 434.292362 866.570172 -0.40307 -0.00017505 -0.011662 -5.0647E-06 -0.41473 -0.00018011 434.2922722632543 63.204 0.39326 66.46 66.396 66.789 3.2558 54 29 2 0 0 0 0.82752 1 14997 14997 0.69038 0 1 512170 30506 5469 19399 19410 35242 35242 0.13154975756310705 PKKAPAKK 8 Unmodified _PKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF;ENST00000446054.1_1_7:84506012-84506255:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-SECPEP UPN47_class_I_Rep_3 4 434.88232421875 2 434.292362 866.570172 -0.43641 -0.00018953 0.25758 0.00011187 -0.17883 -7.7666E-05 434.2924033831386 63.592 0.25134 66.766 66.7 66.951 3.1741 40 22 2 0 0 0 0.72333 1 15201 15201 2.3027 0 1 379160 30507 5469 19399 19410 35243 35243 0.13154975756310705 PKKAPAKK 8 Unmodified _PKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF;ENST00000446054.1_1_7:84506012-84506255:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 434.292362 866.570172 0.019636 8.5278E-06 -0.53103 -0.00023062 -0.5114 -0.0002221 434.29203987483595 63.386 0.1162 66.745 66.668 66.784 3.3595 0.019331 -0.00020629 NaN 2.3027 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 200090 30508 5469 19399 19410 0.13154975756310705 PKKAPAKK 8 Unmodified _PKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF;ENST00000446054.1_1_7:84506012-84506255:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.07332 3.1842E-05 -0.45489 -0.00019756 -0.38157 -0.00016571 434.292097920458 63.236 0.097523 66.698 66.661 66.759 3.4625 -0.027839 -0.00014015 NaN 2.3027 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 266820 30509 5469 19399 19410 0.13154975756310705 PKKAPAKK 8 Unmodified _PKKAPAKK_ 0 0 0 ENSG00000198830|ENST00000361427|HMGN2;ENST00000261249.6_1_14:61438965-61439184:-|nuORF;ENST00000493418.1_1_1:26800500-26801161:+|nuORF;ENST00000446054.1_1_7:84506012-84506255:+|nuORF ENSG00000198830|ENST00000361427|HMGN2 ENSG00000198830|ENST00000361427|HMGN2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.292362 866.570172 0.14369 6.2405E-05 -0.57638 -0.00025032 -0.43269 -0.00018791 434.29202928493123 63.271 0.1993 66.745 66.607 66.806 3.4738 0.018439 -0.00024568 NaN 2.3027 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 610040 30510 5469 19399 19410 0.13154975756310705 PKKHMKKC 8 Unmodified _PKKHMKKC_ 0 0 0 L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|26|2|sense;L1PA3_dup7642|chr10:76219057-76223274:+|1.9037973974433096|0.0347962040179519|5.77|151.0|119|3|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|170|3|sense;L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|105|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|172|3|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|59|1|sense;L1PA3_dup10431|chr20:25329950-25335970:+|1.101500721299389|0.074946822761913|3.88|150.0|86|2|sense L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|26|2|sense L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|26|2|sense MSMS UPN48_class_I_Rep_2 6 500.281982421875 2 500.283157 998.551762 NaN NaN NaN NaN NaN NaN NaN 19.423 1 23.073 22.573 23.573 3.6497 0 0 0 0.40746 1 1478 1478 0.69038 0.16561 1 30511 14219 19400 19411 35244 35244 0.05242774518455917 PKKHQTLE 8 Unmodified _PKKHQTLE_ 0 0 0 REV__L1M4_dup16836|chr15:64581188-64581922:-|3.243038967196468|0.0144118766044455|7.81|151.0|16|2|sense REV__L1M4_dup16836|chr15:64581188-64581922:-|3.243038967196468|0.0144118766044455|7.81|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 490.7292785644531 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 116.35 1 119.97 119.47 120.47 3.6254 0 0 0 0.40753 1 28328 28328 0.6015 0 1 + 30512 24388 19401 19412 35245 35245 0.05448876163097793 PKKHQTLE 8 Unmodified _PKKHQTLE_ 0 0 0 REV__L1M4_dup16836|chr15:64581188-64581922:-|3.243038967196468|0.0144118766044455|7.81|151.0|16|2|sense REV__L1M4_dup16836|chr15:64581188-64581922:-|3.243038967196468|0.0144118766044455|7.81|151.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 490.7815246582031 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 113.84 1 117.5 117 118 3.663 0 0 0 0.40643 1 27186 27186 2.0598 0 1 + 30513 24388 19401 19412 35246 35246 0.05448876163097793 PKKHRRMH 8 Unmodified _PKKHRRMH_ 0 0 0 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 REV__nc|ENSG00000070047|Q9P1Y6-3|PHRF1 MSMS UPN47_class_I_Rep_1 2 545.3169555664062 2 545.314169 1088.61378 NaN NaN NaN NaN NaN NaN NaN 80.618 1 84.105 83.605 84.605 3.4874 0 0 0 0.40738 1 20087 20087 0.79363 0.10326 1 + 30514 17791 19402 19413 35247 35247 0.07302261981817537 PKKHTKFP 8 Unmodified _PKKHTKFP_ 0 0 0 REV__LTR27D_dup58|chr3:121918874-121919737:-|1.8999507344958395|0.1069640161325027|4.15|151.0|3|1|sense REV__LTR27D_dup58|chr3:121918874-121919737:-|1.8999507344958395|0.1069640161325027|4.15|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 491.79632568359375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.576 1 68.05 67.55 68.55 3.4743 0 0 0 0.40604 1 14610 14610 2.5775 0 1 + 30515 30894 19403 19414 35248 35248 0.08446074267999393 PKKIELTY 8 Unmodified _PKKIELTY_ 0 0 0 REV__Charlie1a_dup221|chr1:89682476-89683362:+|1.2608226123660349|0.0437269196880224|4.85|150.0|27|3|sense REV__Charlie1a_dup221|chr1:89682476-89683362:+|1.2608226123660349|0.0437269196880224|4.85|150.0|27|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2953796386719 2 496.294768 990.574983 0.066132 3.2821E-05 1.4895 0.00073921 1.5556 0.00077204 496.2954179792322 30.911 0.076096 30.911 30.896 30.973 0 7 3 3 0 0 0 0.82752 1 5102 5102 2.3027 0 1 773470 + 30516 17306 19404 19415 35249 35249 0.07931815108429419 PKKKMTPI 8 Unmodified _PKKKMTPI_ 0 0 0 REV__ENST00000380716.8_1_9:15486059-15486895:-|nuORF REV__ENST00000380716.8_1_9:15486059-15486895:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.795166015625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 23.146 1 26.497 25.997 26.997 3.3503 0 0 0 0.40746 1 2892 2892 0.69038 0 1 + 30517 22054 19405 19416 35250 35250 0.10008482818830089 PKKKRENPNK 10 Unmodified _PKKKRENPNK_ 0 0 0 L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|4|1|sense L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|4|1|sense L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 619.8704223632812 2 619.870028 1237.7255 0.43896 0.0002721 -1.0678 -0.00066191 -0.62887 -0.00038982 619.869269414861 85.752 0.12272 89.358 89.326 89.448 3.6059 14 11 2 0 0 0 0.56333 1 20521 20521 1.4819 0 1 66890 30518 15183 19406 19417 35251 35251 0.11614974819917734 PKKLANIKK 9 Unmodified _PKKLANIKK_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN46_class_I_Rep_3 1 520.3521728515625 2 520.352951 1038.69135 0.32738 0.00017035 0.51559 0.00026829 0.84297 0.00043864 520.3529794514199 108.78 0.89362 108.78 108.52 109.41 0 104 75 2 0 0 0 0.46434 1 26567 26567 4.3292 0 1 6107900 + 30519 19287 19407 19418 35252 35252 0.17355178398975113 PKKLANIKK 9 Unmodified _PKKLANIKK_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS UPN48_class_I_Rep_3 7 520.3526611328125 2 520.352951 1038.69135 0.38895 0.00020239 -0.16859 -8.7727E-05 0.22036 0.00011467 520.3527312939021 108.62 0.56184 112.3 112.25 112.81 3.6751 93 63 2 0 0 0 0.46434 1 25757 25757 4.3292 0 1 14865000 + 30520 19287 19407 19418 35253 35253 0.17355178398975113 PKKLANIKK 9 Unmodified _PKKLANIKK_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 520.352951 1038.69135 0.26924 0.0001401 -0.37784 -0.00019661 -0.10859 -5.6506E-05 520.3525382280789 108.65 0.093346 112.28 112.25 112.35 3.6321 -0.02114 -0.00012928 NaN 4.3292 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3164400 + 30521 19287 19407 19418 0.17355178398975113 PKKLANIKK 9 Unmodified _PKKLANIKK_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 520.352951 1038.69135 0.36796 0.00019147 -3.079 -0.0016022 -2.711 -0.0014107 520.3519144038567 108.6 0.061485 112.27 112.23 112.29 3.6746 -0.029013 -0.0029404 NaN 4.3292 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2608300 + 30522 19287 19407 19418 0.17355178398975113 PKKLGGWP 8 Unmodified _PKKLGGWP_ 0 0 0 REV__MamGypLTR1d_dup446|chrX:30554348-30554789:-|1.0788336294175884|0.0945347249852357|3.51|151.0|11|2|sense REV__MamGypLTR1d_dup446|chrX:30554348-30554789:-|1.0788336294175884|0.0945347249852357|3.51|151.0|11|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 442.2317810058594 2 441.763438 881.512323 0.13689 6.0475E-05 0.22895 0.00010114 0.36584 0.00016162 441.76359713248365 44.663 0.066868 44.663 44.633 44.7 0 11 7 2 0 0 0 0.72333 1 9012 9012 2.3027 0 1 106020 + 30523 31047 19408 19419 35254 35254 0.06682713830889497 PKKLRRRRRRA 11 Unmodified _PKKLRRRRRRA_ 0 0 0 REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF MSMS UPN47_class_I_Rep_3 4 498.3351135253906 3 498.334309 1491.9811 NaN NaN NaN NaN NaN NaN NaN 116.4 1 119.86 119.36 120.36 3.462 0 0 0 0.38417 1 28641 28641 0 0 1 + 30524 21926 19409 19420 35255 35255 0.25478720518526643 PKKLYYISP 9 Unmodified _PKKLYYISP_ 0 0 0 LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|80|3|anti-sense LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|80|3|anti-sense LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|80|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.822509765625 2 554.823692 1107.63283 0.37475 0.00020792 -0.44061 -0.00024446 -0.065859 -3.654E-05 554.8232976682859 69.241 0.62462 72.609 72.24 72.865 3.3678 79 48 2 0 0 0 0.42249 1 16693 16693 6.7232 0 1 143370 30525 15625 19410 19421 35256 35256 0.0833207703383323 PKKLYYISP 9 Unmodified _PKKLYYISP_ 0 0 0 LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|80|3|anti-sense LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|80|3|anti-sense LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|80|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.8231201171875 2 554.823692 1107.63283 0.40292 0.00022355 -0.32249 -0.00017893 0.080426 4.4622E-05 554.8232821406654 69.555 0.46652 72.831 72.596 73.063 3.2761 61 38 2 0 0 0 0.42249 1 16827 16827 6.7232 0 1 97555 30526 15625 19410 19421 35257 35257 0.0833207703383323 PKKMSKRRV 9 Unmodified _PKKMSKRRV_ 0 0 0 REV__ENST00000428623.5_1_2:145277196-145277833:+|nuORF REV__ENST00000428623.5_1_2:145277196-145277833:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 565.35400390625 2 565.35296 1128.69137 0.45637 0.00025801 0.54526 0.00030826 1.0016 0.00056627 565.3531437651623 109.14 0.44808 109.14 109 109.44 0 71 32 3 0 0 0 0.43982 1 26830 26830 5.7319 0.83484 1 4575500 + 30527 22271 19411 19422 35258 35258 0.1321685512732529 PKKNSLKR 8 Unmodified _PKKNSLKR_ 0 0 0 REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|29|2|sense REV__L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 485.7724609375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 114.9 1 118.56 118.06 119.06 3.6616 0 0 0 0.40746 1 27482 27482 0.69038 0 1 + 30528 25689 19412 19423 35259 35259 0.12232861670997863 PKKPPVKPP 9 Unmodified _PKKPPVKPP_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MSMS UPN48_class_I_Rep_3 7 494.3194580078125 2 494.32112 986.627687 NaN NaN NaN NaN NaN NaN NaN 64.882 1 68.39 67.89 68.89 3.5079 0 0 0 0.39518 1 14619 14619 1.8442 0 1 30529 1309 19413 19424 35260 35260 0.13383817961891964 PKKPQRKL 8 Unmodified _PKKPQRKL_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MSMS UPN47_class_I_Rep_2 3 497.8293762207031 2 497.829643 993.644734 NaN NaN NaN NaN NaN NaN NaN 12.895 1 16.283 15.783 16.783 3.388 0 0 0 0.4044 1 180 180 4.756 0 1 + 30530 21281 19414 19425 35261 35261 0.14765738567689368 PKKQCLIL 8 Unmodified _PKKQCLIL_ 0 0 0 L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7933349609375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 49.783 1 53.126 52.626 53.626 3.3431 0 0 0 0.40404 1 10885 10885 5.2307 0 1 30531 13928 19415 19426 35262 35262 0.10008482818830089 PKKQCLIL 8 Unmodified _PKKQCLIL_ 0 0 0 L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.795654296875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 49.826 1 53.169 52.669 53.669 3.3431 0 0 0 0.40404 1 10899 10899 5.2307 0 1 30532 13928 19415 19426 35263 35263 0.10008482818830089 PKKQCLIL 8 Unmodified _PKKQCLIL_ 0 0 0 L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|139|3|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 49.936 1 53.163 52.663 53.663 3.2262 0 0 0 0.39819 1 10988 10988 8.5933 0 1 30533 13928 19415 19426 35264 35264 0.10008482818830089 PKKQFIRY 8 Unmodified _PKKQFIRY_ 0 0 0 REV__ENSG00000175322|ENST00000590202|ZNF519 REV__ENSG00000175322|ENST00000590202|ZNF519 MULTI-SECPEP UPN46_class_I_Rep_3 1 540.7552490234375 2 540.321651 1078.62875 0.20294 0.00010965 0.027666 1.4949E-05 0.23061 0.0001246 540.3217902897967 34.54 0.042999 34.54 34.512 34.555 0 5 3 2 0 0 0 0.72333 1 6180 6180 2.5775 0 1 183170 + 30534 20552 19416 19427 35265 35265 0.09258032330808419 PKKQPHNFFT 10 Unmodified _PKKQPHNFFT_ 0 0 0 REV__L1MB8_dup13717|chr16:16092266-16092687:-|1.1357439358895265|0.0059024419217813|7.59|151.0|18|1|anti-sense REV__L1MB8_dup13717|chr16:16092266-16092687:-|1.1357439358895265|0.0059024419217813|7.59|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 415.2256164550781 3 415.224257 1242.65094 NaN NaN NaN NaN NaN NaN NaN 91.268 1 95.024 94.524 95.524 3.7554 0 0 0 0.53105 1 21731 21731 2.8433 0.91578 1 + 30535 26369 19417 19428 35266 35266 0.039322120085671486 PKKRGLAP 8 Unmodified _PKKRGLAP_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS UPN48_class_I_Rep_3 7 433.7720642089844 2 433.782162 865.549771 NaN NaN NaN NaN NaN NaN NaN 66.667 1 70.175 69.675 70.675 3.5077 0 0 0 0.40625 1 15160 15160 2.3027 0 1 30536 1579 19418 19429 35267 35267 0.11161805096503485 PKKRRLKLLK 10 Unmodified _PKKRRLKLLK_ 0 0 0 L1MB7_dup14221|chr10:103158095-103158534:+|1.835213173151094|0.0088075661348427|7.7|151.0|5|1|sense L1MB7_dup14221|chr10:103158095-103158534:+|1.835213173151094|0.0088075661348427|7.7|151.0|5|1|sense L1MB7_dup14221|chr10:103158095-103158534:+|1.835213173151094|0.0088075661348427|7.7|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 427.3136901855469 3 427.306475 1278.89759 NaN NaN NaN NaN NaN NaN NaN 108.14 1 111.82 111.32 112.32 3.6813 0 0 0 0.53105 1 25556 25556 0.13989 0 1 30537 10712 19419 19430 35268 35268 0.269301712980905 PKKVIHIR 8 Unmodified _PKKVIHIR_ 0 0 0 REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317 REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317 MSMS UPN46_class_I_Rep_3 1 495.823486328125 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 27.702 1 27.702 27.202 28.202 0 0 0 0 0.40746 1 4149 4149 0.69038 0 1 + 30538 18954 19420 19431 35269 35269 0.15458042430327623 PKKVRKVP 8 Unmodified _PKKVRKVP_ 0 0 0 nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 nc|ENSG00000071564|P15923-2|TCF3 nc|ENSG00000071564|P15923-2|TCF3 MSMS UPN46_class_I_Rep_3 1 476.3265686035156 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 34.627 1 34.627 34.127 35.127 0 0 0 0 0.40746 1 6206 6206 0.69038 0 1 30539 16635 19421 19432 35270 35270 0.161626400560408 PKLAGPLH 8 Unmodified _PKLAGPLH_ 0 0 0 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 MSMS UPN48_class_I_Rep_1 5 416.7564392089844 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.42 1 113.05 112.55 113.55 3.6321 0 0 0 0.40364 1 26573 26573 5.7604 0 1 30540 1790 19422 19433 35271 35271 0.07418427313859866 PKLAGPLH 8 Unmodified _PKLAGPLH_ 0 0 0 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 MSMS UPN48_class_I_Rep_1 5 416.756103515625 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.55 1 113.18 112.68 113.68 3.6321 0 0 0 0.40604 1 26605 26605 2.5775 0 1 30541 1790 19422 19433 35272 35272 0.07418427313859866 PKLENMHFL 9 Unmodified _PKLENMHFL_ 0 0 0 L1MEd_dup20864|chr21:38411607-38412667:-|1.719508978981115|0.0412458872542553|5.38|149.0|42|3|sense L1MEd_dup20864|chr21:38411607-38412667:-|1.719508978981115|0.0412458872542553|5.38|149.0|42|3|sense L1MEd_dup20864|chr21:38411607-38412667:-|1.719508978981115|0.0412458872542553|5.38|149.0|42|3|sense MSMS UPN48_class_I_Rep_2 6 564.7965087890625 2 564.797152 1127.57975 NaN NaN NaN NaN NaN NaN NaN 29.168 1 32.8 32.3 33.3 3.6316 0 0 0 0.39428 1 4109 4109 2.0598 0.21551 1 30542 13198 19423 19434 35273 35273 0.02106375979542463 PKLHGCGWW 9 Unmodified _PKLHGCGWW_ 0 0 0 REV__ENST00000340857.3_1_22:38202960-38203092:+|nuORF REV__ENST00000340857.3_1_22:38202960-38203092:+|nuORF MSMS UPN47_class_I_Rep_3 4 541.7808227539062 2 542.263279 1082.51201 NaN NaN NaN NaN NaN NaN NaN 28.997 1 32.321 31.821 32.821 3.3235 0 0 0 0.39428 1 4626 4626 2.0598 0.21551 1 + 30543 21820 19424 19435 35274 35274 -0.0259502916060228 PKLHNERRL 9 Unmodified _PKLHNERRL_ 0 0 0 REV__AluSx1_dup93038|chr16:69642936-69643238:+|1.692166221344923|0.168918681927811|3.32|151.0|3|1|sense REV__AluSx1_dup93038|chr16:69642936-69643238:+|1.692166221344923|0.168918681927811|3.32|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 581.8441162109375 2 581.843813 1161.67307 NaN NaN NaN NaN NaN NaN NaN 89.316 1 92.941 92.441 93.441 3.6255 0 0 0 0.39518 1 21444 21444 1.8442 1.1539 1 + 30544 17188 19425 19436 35275 35275 0.09870436476990108 PKLIIPLIF 9 Unmodified _PKLIIPLIF_ 0 0 0 REV__LTR57-int_dup302|chr22:19502017-19502904:-|1.0151658880547338|0.1806017105677584|2.49|151.0|61|3|anti-sense REV__LTR57-int_dup302|chr22:19502017-19502904:-|1.0151658880547338|0.1806017105677584|2.49|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.356201171875 2 527.357171 1052.69979 NaN NaN NaN NaN NaN NaN NaN 74.587 1 78.077 77.577 78.577 3.49 0 0 0 0.40038 1 17631 17631 0.6015 0 1 + 30545 30976 19426 19437 35276 35276 0.1755473231560245 PKLLQSTAV 9 Unmodified _PKLLQSTAV_ 0 0 0 REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MSMS UPN47_class_I_Rep_3 4 478.79229736328125 2 478.792392 955.570232 NaN NaN NaN NaN NaN NaN NaN 44.677 1 47.921 47.421 48.421 3.2441 0 0 0 0.37891 1 9392 9392 5.7319 0.50118 1 + 30546 18875 19427 19438 35277 35277 0.09066930965661868 PKLPEKLIKT 10 Unmodified _PKLPEKLIKT_ 0 0 0 Charlie1a_dup3706|chr10:86494018-86494918:+|2.640535854813812|0.0603046735369124|5.45|151.0|28|3|sense Charlie1a_dup3706|chr10:86494018-86494918:+|2.640535854813812|0.0603046735369124|5.45|151.0|28|3|sense Charlie1a_dup3706|chr10:86494018-86494918:+|2.640535854813812|0.0603046735369124|5.45|151.0|28|3|sense MSMS UPN47_class_I_Rep_3 4 583.8790893554688 2 583.878999 1165.74344 NaN NaN NaN NaN NaN NaN NaN 47.866 1 51.106 50.606 51.606 3.2405 0 0 0 0.53105 1 10357 10357 0.35063 0.043601 1 30547 471 19428 19439 35278 35278 0.1672029702206146 PKLPQRRA 8 Unmodified _PKLPQRRA_ 0 0 0 REV__ENSG00000155833|ENST00000374798|CYLC2 REV__ENSG00000155833|ENST00000374798|CYLC2 MULTI-MSMS UPN46_class_I_Rep_3 1 483.30364990234375 2 483.303793 964.593033 0.27589 0.00013334 -0.85918 -0.00041525 -0.58329 -0.00028191 483.3032680864938 107.94 0.40751 107.94 107.9 108.31 0 46 33 3 0 0 0 0.82752 2 26346 26346;26381 8.5933 2.3875 1 77434000 + 30548 19775 19429 19440 35279;35280 35279 0.10931994873783424 PKLPQRRA 8 Unmodified _PKLPQRRA_ 0 0 0 REV__ENSG00000155833|ENST00000374798|CYLC2 REV__ENSG00000155833|ENST00000374798|CYLC2 MULTI-MSMS UPN47_class_I_Rep_3 4 483.3034973144531 2 483.303793 964.593033 0.18089 8.7424E-05 -0.0072016 -3.4806E-06 0.17369 8.3943E-05 483.3036694281473 107.78 0.13615 111.31 111.27 111.41 3.5382 52 16 4 0 0 0 0.82752 1 26322 26322 13.508 0 1 35930000 + 30549 19775 19429 19440 35281 35281 0.10931994873783424 PKLPQRRA 8 Unmodified _PKLPQRRA_ 0 0 0 REV__ENSG00000155833|ENST00000374798|CYLC2 REV__ENSG00000155833|ENST00000374798|CYLC2 MSMS UPN48_class_I_Rep_1 5 483.3163146972656 2 483.303793 964.593033 NaN NaN NaN NaN NaN NaN NaN 108.23 1 111.86 111.36 112.36 3.6313 0 0 0 0.39624 1 26170 26170 9.3474 4.1168 1 + 30550 19775 19429 19440 35282 35282 0.10931994873783424 PKLPQRRA 8 Unmodified _PKLPQRRA_ 0 0 0 REV__ENSG00000155833|ENST00000374798|CYLC2 REV__ENSG00000155833|ENST00000374798|CYLC2 MULTI-MSMS UPN48_class_I_Rep_3 7 483.3038024902344 2 483.303793 964.593033 0.22777 0.00011008 -0.29982 -0.0001449 -0.072046 -3.482E-05 483.30355029074735 107.78 0.15723 111.46 111.39 111.54 3.6813 44 14 4 0 0 0 0.82752 1 25427 25427 8.5933 0 1 81786000 + 30551 19775 19429 19440 35283 35283 0.10931994873783424 PKLQLKVGKL 10 Unmodified _PKLQLKVGKL_ 0 0 0 REV__THE1C-int_dup1436|chr12:59611514-59613042:-|1.2172757121598292|0.0702424633889983|4.12|151.0|2|1|sense REV__THE1C-int_dup1436|chr12:59611514-59613042:-|1.2172757121598292|0.0702424633889983|4.12|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 562.3798217773438 2 562.381709 1122.74886 NaN NaN NaN NaN NaN NaN NaN 81.002 1 81.002 80.502 81.502 0 0 0 0 0.53105 1 19107 19107 0.40072 0 1 + 30552 32284 19430 19441 35284 35284 0.1924002060454768 PKLTPKMK 8 Unmodified _PKLTPKMK_ 0 0 0 ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5 ENST00000437205.5_1_3:183639090-183689734:-|nuORF ENST00000437205.5_1_3:183639090-183689734:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7923889160156 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 49.156 1 52.815 52.315 53.315 3.6592 0 0 0 0.40625 1 10671 10671 2.3027 0 1 30553 2090 19431 19442 35285 35285 0.1000848281881872 PKLTVSFLS 9 Unmodified _PKLTVSFLS_ 0 0 0 L1PB1_dup11543|chr16:17121595-17123292:-|1.445491415299674|0.2290438889276165|2.66|151.0|89|3|anti-sense L1PB1_dup11543|chr16:17121595-17123292:-|1.445491415299674|0.2290438889276165|2.66|151.0|89|3|anti-sense L1PB1_dup11543|chr16:17121595-17123292:-|1.445491415299674|0.2290438889276165|2.66|151.0|89|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2951965332031 2 496.294768 990.574983 -0.011047 -5.4824E-06 1.3194 0.00065479 1.3083 0.00064931 496.2953425681549 27.421 0.15329 27.421 27.31 27.463 0 16 10 3 0 0 0 0.48846 1 4068 4068 1.8442 0 1 178760 30554 15022 19432 19443 35286 35286 0.07931815108440787 PKLVSIPFGF 10 Unmodified _PKLVSIPFGF_ 0 0 0 REV__L1MEc_dup2046|chr2:37044968-37045972:-|2.423647789704566|0.0592631325014815|5.35|151.0|78|3|anti-sense REV__L1MEc_dup2046|chr2:37044968-37045972:-|2.423647789704566|0.0592631325014815|5.35|151.0|78|3|anti-sense MSMS UPN46_class_I_Rep_3 1 552.8244018554688 2 552.826235 1103.63792 NaN NaN NaN NaN NaN NaN NaN 77.229 1 77.229 76.729 77.729 0 0 0 0 0.53105 1 18045 18045 1.6526 0.58116 1 + 30555 28434 19433 19444 35287 35287 0.09024380896471484 PKMCLIRY 8 Unmodified _PKMCLIRY_ 0 0 0 REV__L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|208|3|anti-sense REV__L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|208|3|anti-sense MSMS UPN46_class_I_Rep_3 1 512.2763061523438 2 512.277541 1022.54053 NaN NaN NaN NaN NaN NaN NaN 29.393 1 29.393 28.893 29.893 0 0 0 0 0.40625 1 4648 4648 2.3027 0 1 + 30556 26984 19434 19445 35288 35288 0.030159524243231317 PKMKRMLK 8 Unmodified _PKMKRMLK_ 0 0 0 REV__MLT1M_dup1339|chrX:74268582-74268703:+|2.3682132840744967|0.0702742007548125|5.07|151.0|5|3|sense REV__MLT1M_dup1339|chrX:74268582-74268703:+|2.3682132840744967|0.0702742007548125|5.07|151.0|5|3|sense MSMS UPN48_class_I_Rep_1 5 516.313232421875 2 516.314457 1030.61436 NaN NaN NaN NaN NaN NaN NaN 102.57 1 106.19 105.69 106.69 3.6164 0 0 0 0.40625 1 24728 24728 2.3027 0 1 + 30557 31803 19435 19446 35289 35289 0.10027920586639993 PKNKKSLR 8 Unmodified _PKNKKSLR_ 0 0 0 REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|137|3|sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|137|3|sense MSMS UPN47_class_I_Rep_1 2 485.8116760253906 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 114.12 1 117.69 117.19 118.19 3.572 0 0 0 0.40746 1 28187 28187 0.69038 0 1 + 30558 30416 19436 19447 35290 35290 0.12232861670986495 PKNKLAAMRK 10 Unmodified _PKNKLAAMRK_ 0 0 0 REV__ENSG00000254093|ENST00000314787|PINX1 REV__ENSG00000254093|ENST00000314787|PINX1 MULTI-MSMS UPN47_class_I_Rep_3 4 578.8534545898438 2 578.852793 1155.69103 0.50608 0.00029294 0.20317 0.00011761 0.70925 0.00041055 578.8530944986763 108.31 0.09996 111.84 111.77 111.87 3.5382 12 9 2 0 0 0 0.54466 1 26502 26502 6.2058 0 1 1569100 + 30559 21370 19437 19448 35291 35291 0.11941435407470635 PKNKMSTEKTA 11 Unmodified _PKNKMSTEKTA_ 0 0 0 REV__ENSG00000111727|ENST00000229330|HCFC2 REV__ENSG00000111727|ENST00000229330|HCFC2 MULTI-MSMS UPN47_class_I_Rep_2 3 617.826171875 2 617.826637 1233.63872 0.40194 0.00024833 -0.54088 -0.00033417 -0.13894 -8.5842E-05 617.8260716904446 69.53 0.47987 72.806 72.433 72.913 3.2761 51 36 2 0 0 0 0.67398 1 16847 16847 1.0715 0 1 79116 + 30560 18463 19438 19449 35292 35292 0.031248074832092243 PKPAILTH 8 Unmodified _PKPAILTH_ 0 0 0 ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENST00000593745.1_1_19:59021097-59021388:-|nuORF ENSG00000083807|ENST00000263093|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 MULTI-MSMS UPN46_class_I_Rep_3 1 438.76922607421875 2 438.76872 875.522887 -0.17819 -7.8185E-05 1.85 0.00081174 1.6718 0.00073355 438.7693901539622 26.664 0.2927 26.664 26.51 26.802 0 34 22 2 0 0 0 0.82752 1 3856 3856 2.3027 0.24298 1 201810 30561 1246 19439 19450 35293 35293 0.08014696485315653 PKPAILTH 8 Unmodified _PKPAILTH_ 0 0 0 ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENST00000593745.1_1_19:59021097-59021388:-|nuORF ENSG00000083807|ENST00000263093|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 MSMS UPN46_class_I_Rep_3 1 438.7693786621094 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 34.151 1 34.151 33.651 34.651 0 0 0 0 0.40404 1 6062 6062 5.2307 2.3415 1 30562 1246 19439 19450 35294 35294 0.08014696485315653 PKPFSKTV 8 Unmodified _PKPFSKTV_ 0 0 0 REV__L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|70|2|anti-sense REV__L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|70|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 452.2694091796875 2 452.268553 902.522553 0.086209 3.899E-05 0.55055 0.000249 0.63676 0.00028798 452.2690205974875 37.048 0.090843 37.048 37.001 37.092 0 12 6 3 0 0 0 0.72333 1 6937 6937 2.0598 0 1 168200 + 30563 30462 19440 19451 35295 35295 0.06739276765472368 PKPHPLFR 8 Unmodified _PKPHPLFR_ 0 0 0 REV__HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|50|3|sense REV__HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|50|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29559326171875 2 496.295436 990.57632 0.0012795 6.35E-07 0.10268 5.0962E-05 0.10396 5.1597E-05 496.2954547375532 28.004 0.22031 28.004 27.84 28.06 0 31 15 3 0 0 0 0.82752 1 4255 4255 0.69038 0 1 305440 + 30564 23725 19441 19452 35296 35296 0.08065493987851369 PKPIFPRLWR 10 Unmodified _PKPIFPRLWR_ 0 0 0 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MSMS UPN47_class_I_Rep_1 2 437.6021728515625 3 437.267909 1308.7819 NaN NaN NaN NaN NaN NaN NaN 51.884 1 55.478 54.978 55.978 3.5932 0 0 0 0.53105 1 11503 11503 0.15932 0 1 + 30565 20901 19442 19453 35297 35297 0.13985647447248084 PKPIFPRLWR 10 Unmodified _PKPIFPRLWR_ 0 0 0 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MULTI-MSMS UPN47_class_I_Rep_2 3 437.26751708984375 3 437.267909 1308.7819 -0.32183 -0.00014072 -0.12059 -5.2729E-05 -0.44242 -0.00019345 437.2677418913459 50.525 1.103 53.868 53.31 54.413 3.3431 87 57 2 0 0 0 0.5652 1 11135 11135 0.15932 0 1 106500 + 30566 20901 19442 19453 35298 35298 0.13985647447248084 PKPIFPRLWR 10 Unmodified _PKPIFPRLWR_ 0 0 0 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MULTI-MSMS UPN47_class_I_Rep_2 3 437.26776123046875 3 437.267909 1308.7819 -0.271 -0.0001185 -0.062646 -2.7393E-05 -0.33364 -0.00014589 437.26784998691403 51.546 0.79165 54.885 54.604 55.396 3.3386 48 39 2 0 0 0 0.5652 2 11351 11351;11466 0.15932 0 1 120880 + 30567 20901 19442 19453 35299;35300 35299 0.13985647447248084 PKPIFPRLWR 10 Unmodified _PKPIFPRLWR_ 0 0 0 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MULTI-MATCH UPN46_class_I_Rep_3 1 3 437.267909 1308.7819 0.073948 3.2335E-05 -0.49668 -0.00021718 -0.42273 -0.00018485 437.26770754646935 54.794 0.21062 54.794 54.692 54.903 0 -0.030735 -0.00050336 NaN 0.15932 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 156620 + 30568 20901 19442 19453 0.13985647447248084 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_1 5 495.83380126953125 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 39.586 1 43.091 42.591 43.591 3.5048 0 0 0 0.40746 1 7008 7008 0.69038 0.69038 1 30569 999 19443 19454 35301 35301 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_1 5 495.8333740234375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 39.951 1 43.456 42.956 43.956 3.5048 0 0 0 0.40746 1 7115 7115 0.69038 0.69038 1 30570 999 19443 19454 35302 35302 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_2 6 495.8779602050781 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 36.854 1 40.556 40.056 41.056 3.7021 0 0 0 0.40746 1 6238 6238 0.69038 0.69038 1 30571 999 19443 19454 35303 35303 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_2 6 495.8343505859375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 38.803 1 42.533 42.033 43.033 3.7297 0 0 0 0.40746 1 6807 6807 0.69038 0.69038 1 30572 999 19443 19454 35304 35304 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_3 7 495.8344421386719 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 39.139 1 42.795 42.295 43.295 3.6557 0 0 0 0.40746 1 6808 6808 0.69038 0.69038 1 30573 999 19443 19454 35305 35305 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_3 7 495.83489990234375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 39.345 1 43.001 42.501 43.501 3.6557 0 0 0 0.40746 1 6871 6871 0.69038 0 1 30574 999 19443 19454 35306 35306 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_3 7 495.8336486816406 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 45.71 1 49.347 48.847 49.847 3.6369 0 0 0 0.40746 1 8783 8783 0.69038 0.69038 1 30575 999 19443 19454 35307 35307 0.15458042430316254 PKPKKKKH 8 Unmodified _PKPKKKKH_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MSMS UPN48_class_I_Rep_3 7 495.75323486328125 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 46.533 1 50.17 49.67 50.67 3.6363 0 0 0 0.40746 1 9035 9035 0.69038 0.69038 1 30576 999 19443 19454 35308 35308 0.15458042430316254 PKPKRAPKQK 10 Unmodified _PKPKRAPKQK_ 0 0 0 ENSG00000077097|ENST00000264331|TOP2B;nc|ENSG00000077097|Q02880-2|TOP2B ENSG00000077097|ENST00000264331|TOP2B ENSG00000077097|ENST00000264331|TOP2B MSMS UPN47_class_I_Rep_1 2 589.383056640625 2 589.380032 1176.74551 NaN NaN NaN NaN NaN NaN NaN 93.265 1 97.001 96.501 97.501 3.736 0 0 0 0.53105 1 23207 23207 0.40072 0.40072 1 30577 1166 19444 19455 35309 35309 0.16420770550530506 PKPLILNLKKI 11 Unmodified _PKPLILNLKKI_ 0 0 0 REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|11|1|sense REV__L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 638.9400634765625 2 638.939391 1275.86423 NaN NaN NaN NaN NaN NaN NaN 73.13 1 73.13 72.63 73.63 0 0 0 0 0.38417 1 16940 16940 0 0 1 + 30578 24614 19445 19456 35310 35310 0.23733124735508682 PKPLWVVL 8 Unmodified _PKPLWVVL_ 0 0 0 ENST00000493792.1_1_2:3482527-3483229:+|nuORF ENST00000493792.1_1_2:3482527-3483229:+|nuORF ENST00000493792.1_1_2:3482527-3483229:+|nuORF MSMS UPN46_class_I_Rep_3 1 476.3067321777344 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 72.987 1 72.987 72.487 73.487 0 0 0 0 0.40746 1 16898 16898 0.69038 0 1 30579 7084 19446 19457 35311 35311 0.11805030558900853 PKPQFYTFT 9 Unmodified _PKPQFYTFT_ 0 0 0 REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13 REV__nc|ENSG00000160323|Q76LX8-3|ADAMTS13 MSMS UPN48_class_I_Rep_2 6 564.7877807617188 2 564.78985 1127.56515 NaN NaN NaN NaN NaN NaN NaN 27.193 1 30.825 30.325 31.325 3.6311 0 0 0 0.39518 1 3568 3568 1.8442 0.36234 1 + 30580 19884 19447 19458 35312 35312 0.006466271030149073 PKPRHGWGF 9 Unmodified _PKPRHGWGF_ 0 0 0 REV__MSTA_dup2984|chr3:15054881-15055316:-|1.0915343993512123|0.4591524673259581|1.25|151.0|27|3|anti-sense REV__MSTA_dup2984|chr3:15054881-15055316:-|1.0915343993512123|0.4591524673259581|1.25|151.0|27|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 541.8217163085938 2 541.288143 1080.56173 0.38658 0.00020925 -0.11204 -6.0647E-05 0.27454 0.0001486 541.2876244092852 46.541 0.059372 50.29 50.237 50.296 3.7494 5 3 2 0 0 0 0.12422 1 9098 9098 2.3027 0.24298 1 62596 + 30581 31846 19448 19459 35313 35313 0.024674218397194636 PKPVLIIIVK 10 Unmodified _PKPVLIIIVK_ 0 0 0 REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense REV__L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 560.3988037109375 2 560.396828 1118.7791 NaN NaN NaN NaN NaN NaN NaN 114.44 1 118.1 117.6 118.6 3.6511 0 0 0 0.53105 1 27210 27210 0 0 1 + 30582 27842 19449 19460 35314 35314 0.22446379269763383 PKQDRLVSI 9 Unmodified _PKQDRLVSI_ 0 0 0 ENSG00000173705|ENST00000309558|SUSD5 ENSG00000173705|ENST00000309558|SUSD5 ENSG00000173705|ENST00000309558|SUSD5 MULTI-MSMS UPN48_class_I_Rep_2 6 528.3143310546875 2 528.314023 1054.61349 0.41022 0.00021673 -0.56513 -0.00029857 -0.15491 -8.1842E-05 528.313724069863 89.387 0.58415 93.125 92.706 93.29 3.7379 89 63 2 0 0 0 0.50088 1 21235 21235 0.52476 0 1 136110 30583 4645 19450 19461 35315 35315 0.08837120742941806 PKQLRTLY 8 Unmodified _PKQLRTLY_ 0 0 0 REV__nc|ENSG00000163803|Q6P1J6-3|PLB1 REV__nc|ENSG00000163803|Q6P1J6-3|PLB1 MULTI-MSMS UPN46_class_I_Rep_3 1 509.80438232421875 2 509.805834 1017.59712 0.30063 0.00015326 -0.35421 -0.00018058 -0.053579 -2.7315E-05 509.8052793439977 42.817 0.15408 42.817 42.741 42.895 0 21 16 2 0 0 0 0.82752 1 8511 8511 8.5933 0 1 211790 + 30584 20005 19451 19462 35316 35316 0.08902039576832976 PKQNRVLH 8 Unmodified _PKQNRVLH_ 0 0 0 REV__L1MCa_dup1560|chr4:2682477-2683284:-|1.5505769220672694|0.0196002638114233|6.31|151.0|21|3|sense REV__L1MCa_dup1560|chr4:2682477-2683284:-|1.5505769220672694|0.0196002638114233|6.31|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 496.295654296875 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 30.745 1 30.745 30.245 31.245 0 0 0 0 0.40625 1 5050 5050 2.3027 1.5091 1 + 30585 27189 19452 19463 35317 35317 0.0766340449412155 PKQQVTALI 9 Unmodified _PKQQVTALI_ 0 0 0 REV__nc|ENSG00000165973|Q92832-2|NELL1 REV__nc|ENSG00000165973|Q92832-2|NELL1 MSMS UPN48_class_I_Rep_3 7 499.30523681640625 2 499.305667 996.596781 NaN NaN NaN NaN NaN NaN NaN 59.418 1 62.942 62.442 63.442 3.5231 0 0 0 0.38916 1 12966 12966 3.2813 0.28607 1 + 30586 20147 19453 19464 35318 35318 0.09834619856997051 PKQWKYIKK 9 Unmodified _PKQWKYIKK_ 0 0 0 REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|127|3|sense REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|127|3|sense MSMS UPN48_class_I_Rep_1 5 406.91839599609375 3 406.916764 1217.72846 NaN NaN NaN NaN NaN NaN NaN 103.38 1 107 106.5 107.5 3.6209 0 0 0 0.3979 1 24923 24923 1.1933 0.12188 1 + 30587 24859 19454 19465 35319 35319 0.12830849944725742 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 469.8304748535156 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.254 1 97.726 97.226 98.226 3.472 0 0 0 0.39624 1 23237 23237 9.3474 0 1 + 30588 31264 19455 19466 35320 35320 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 469.83038330078125 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.372 1 97.844 97.344 98.344 3.472 0 0 0 0.38547 1 23263 23263 13.508 0 1 + 30589 31264 19455 19466 35321 35321 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 469.8300476074219 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.42 1 97.892 97.392 98.392 3.472 0 0 0 0.38547 1 23273 23273 13.508 0 1 + 30590 31264 19455 19466 35322 35322 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 469.8302307128906 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.501 1 97.973 97.473 98.473 3.472 0 0 0 0.38547 1 23289 23289 13.508 0 1 + 30591 31264 19455 19466 35323 35323 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 469.8301086425781 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.65 1 98.122 97.622 98.622 3.472 0 0 0 0.38547 1 23321 23321 13.508 0 1 + 30592 31264 19455 19466 35324 35324 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 469.83026123046875 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 93.911 1 97.687 97.187 98.187 3.7761 0 0 0 0.39819 1 22331 22331 8.5933 0 1 + 30593 31264 19455 19466 35325 35325 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 469.8303527832031 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.032 1 97.808 97.308 98.308 3.7761 0 0 0 0.38547 1 22361 22361 13.508 0 1 + 30594 31264 19455 19466 35326 35326 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 469.8302001953125 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.152 1 97.928 97.428 98.428 3.7761 0 0 0 0.40404 1 22388 22388 5.2307 0 1 + 30595 31264 19455 19466 35327 35327 0.17235524198792973 PKRAKILI 8 Unmodified _PKRAKILI_ 0 0 0 REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense REV__MER34_dup648|chr7:139067710-139068015:-|1.0213172166450422|0.0239470142158254|5.41|151.0|4|2|sense MSMS UPN48_class_I_Rep_3 7 469.8304138183594 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.783 1 98.684 98.184 99.184 3.9016 0 0 0 0.40604 1 22464 22464 2.5775 0 1 + 30596 31264 19455 19466 35328 35328 0.17235524198792973 PKREDRII 8 Unmodified _PKREDRII_ 0 0 0 ENST00000493407.5_1_7:5016050-5024561:+|nuORF;ENST00000406608.2_1_7:5016050-5028783:+|nuORF;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216 ENST00000493407.5_1_7:5016050-5024561:+|nuORF ENST00000493407.5_1_7:5016050-5024561:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 514.3112182617188 2 513.806365 1025.59818 0.26961 0.00013853 1.7184 0.00088293 1.988 0.0010215 513.8066037716496 61.54 0.56724 64.908 64.711 65.278 3.3681 67 40 2 0 0 0 0.82752 1 14538 14538 5.2307 0 1 297320 30597 771 19456 19467 35329 35329 0.08640253945759468 PKRGVRLNL 9 Unmodified _PKRGVRLNL_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MSMS UPN47_class_I_Rep_1 2 526.8367309570312 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 69.025 1 72.393 71.893 72.893 3.3678 0 0 0 0.38639 1 16701 16701 3.9444 0.3479 1 + 30598 18879 19457 19468 35330 35330 0.13768239453634123 PKRKMEPD 8 Unmodified _PKRKMEPD_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MSMS UPN48_class_I_Rep_1 5 500.7659606933594 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 32.059 1 35.586 35.086 36.086 3.5266 0 0 0 0.40746 1 4825 4825 0.69038 0.088878 1 30599 2380 19458 19469 35331 35331 0.017372299113503686 PKRKPRPLQQ 10 Unmodified _PKRKPRPLQQ_ 0 0 0 L1MB7_dup21031|chr19:2303007-2303260:-|1.2007342089442958|0.1740274921535764|2.79|151.0|12|2|anti-sense L1MB7_dup21031|chr19:2303007-2303260:-|1.2007342089442958|0.1740274921535764|2.79|151.0|12|2|anti-sense L1MB7_dup21031|chr19:2303007-2303260:-|1.2007342089442958|0.1740274921535764|2.79|151.0|12|2|anti-sense MSMS UPN48_class_I_Rep_3 7 624.0579833984375 2 624.388388 1246.76222 NaN NaN NaN NaN NaN NaN NaN 103.51 1 107.25 106.75 107.75 3.7434 0 0 0 0.53105 1 24448 24448 1.6526 0.17072 1 30600 10789 19459 19470 35332 35332 0.14871271436504685 PKRKWPKL 8 Unmodified _PKRKWPKL_ 0 0 0 L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|17|2|sense L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|17|2|sense L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|17|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 526.3372802734375 2 526.840011 1051.66547 0.44467 0.00023427 -3.6638 -0.0019302 -3.2191 -0.001696 526.8378764244578 101.03 0.031914 104.83 104.82 104.85 3.7942 6 4 2 0 0 0 0.72333 1 24948 24948 0.69038 0 1 83036 30601 13387 19460 19471 35333 35333 0.14170328947352573 PKRLPRAD 8 Unmodified _PKRLPRAD_ 0 0 0 ENSG00000274443|ENST00000624510|C8orf89 ENSG00000274443|ENST00000624510|C8orf89 ENSG00000274443|ENST00000624510|C8orf89 MSMS UPN46_class_I_Rep_3 1 476.7875061035156 2 476.787976 951.561398 NaN NaN NaN NaN NaN NaN NaN 12.019 1 12.019 11.519 12.519 0 0 0 0 0.40625 1 3 3 2.3027 0 1 30602 5822 19461 19472 35334 35334 0.08368002119834728 PKRLSKMVLF 10 Unmodified _PKRLSKMVLF_ 0 0 0 REV__L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|174|2|anti-sense REV__L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|174|2|anti-sense MSMS UPN48_class_I_Rep_1 5 406.583984375 3 406.917888 1217.73183 NaN NaN NaN NaN NaN NaN NaN 104.79 1 108.41 107.91 108.91 3.6247 0 0 0 0.53105 1 25248 25248 0.69767 0.24315 1 + 30603 30318 19462 19473 35335 35335 0.1316777672709577 PKRREFRRQDP 11 Unmodified _PKRREFRRQDP_ 0 0 0 ENST00000591793.1_1_19:44586217-44589882:+|nuORF;ENST00000590411.5_1_19:44496018-44500260:+|nuORF ENST00000591793.1_1_19:44586217-44589882:+|nuORF ENST00000591793.1_1_19:44586217-44589882:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 495.6109313964844 3 495.611285 1483.81203 -0.32689 -0.00016201 -0.80427 -0.00039861 -1.1312 -0.00056062 495.6109860067491 19.46 0.20263 23.072 22.959 23.161 3.6118 32 21 2 0 0 0 0.67356 1 1801 1801 1.1098 0.65524 1 26328 30604 7611 19463 19474 35336 35336 0.08947354374504357 PKSKCQLQW 9 Unmodified _PKSKCQLQW_ 0 0 0 MLT1E2_dup1580|chr6:127300313-127300912:+|1.0411327630790752|0.1123527793483802|3.21|150.0|26|1|anti-sense MLT1E2_dup1580|chr6:127300313-127300912:+|1.0411327630790752|0.1123527793483802|3.21|150.0|26|1|anti-sense MLT1E2_dup1580|chr6:127300313-127300912:+|1.0411327630790752|0.1123527793483802|3.21|150.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2959594726562 2 559.294776 1116.575 NaN NaN NaN NaN NaN NaN NaN 65.206 1 68.685 68.185 69.185 3.4792 0 0 0 0.39598 1 14805 14805 1.6526 0.45928 1 30605 16372 19464 19475 35337 35337 0.021374918367882856 PKSSKRKEII 10 Unmodified _PKSSKRKEII_ 0 0 0 L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|78|3|sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|78|3|sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|78|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 593.3700561523438 2 593.36933 1184.72411 0.41125 0.00024403 0.87909 0.00052163 1.2903 0.00076565 593.369648633081 107.88 0.38191 111.51 111.43 111.81 3.6313 94 33 4 0 0 0 0.4965 1 26041 26041 12.241 0 1 21831000 30606 8651 19465 19476 35338 35338 0.13913340731187418 PKSTQSAPHE 10 Unmodified _PKSTQSAPHE_ 0 0 0 REV__ENSG00000103148|ENST00000611875|NPRL3 REV__ENSG00000103148|ENST00000611875|NPRL3 MSMS UPN47_class_I_Rep_3 4 541.7492065429688 2 541.26727 1080.51999 NaN NaN NaN NaN NaN NaN NaN 27.516 1 30.858 30.358 31.358 3.3422 0 0 0 0.53105 1 4187 4187 1.1933 0.12188 1 + 30607 18216 19466 19477 35339 35339 -0.017052234301445424 PKSVARIAKLE 11 Unmodified _PKSVARIAKLE_ 0 0 0 ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A ENST00000463740.5_1_9:136217403-136218218:+|nuORF ENST00000463740.5_1_9:136217403-136218218:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 405.2132873535156 3 404.587195 1210.73976 -0.11842 -4.7909E-05 3.5581 0.0014396 3.4397 0.0013917 404.5884420028956 40.108 0.21515 43.613 43.553 43.769 3.5048 23 15 2 0 0 0 22.551 1 7181 7181 0.32927 0 1 84805 30608 6877 19467 19478 35340 35340 0.14281627248237783 PKSVYIIAT 9 Unmodified _PKSVYIIAT_ 0 0 0 L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29534912109375 2 496.294768 990.574983 0.047473 2.356E-05 1.3699 0.00067986 1.4173 0.00070342 496.2953451059063 30.037 0.13687 30.037 30.015 30.152 0 23 11 3 0 0 0 0.48846 1 4865 4865 1.8442 0 1 388810 30609 12775 19468 19479 35341 35341 0.07931815108440787 PKSVYIIAT 9 Unmodified _PKSVYIIAT_ 0 0 0 L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2953796386719 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 27.923 1 27.923 27.423 28.423 0 0 0 0 0.39518 1 4214 4214 1.8442 0 1 30610 12775 19468 19479 35342 35342 0.07931815108440787 PKSVYIIAT 9 Unmodified _PKSVYIIAT_ 0 0 0 L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense L1ME3Cz_dup398|chr1:92470904-92472092:+|1.580157847097729|0.0870199044535977|4.18|151.0|59|2|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2953186035156 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 29.559 1 29.559 29.059 30.059 0 0 0 0 0.39518 1 4697 4697 1.8442 0 1 30611 12775 19468 19479 35343 35343 0.07931815108440787 PKSYEKLNSSS 11 Unmodified _PKSYEKLNSSS_ 0 0 0 nc|ENSG00000111846|Q8N0V5-3|GCNT2 nc|ENSG00000111846|Q8N0V5-3|GCNT2 nc|ENSG00000111846|Q8N0V5-3|GCNT2 MSMS UPN47_class_I_Rep_3 4 620.3126831054688 2 620.314417 1238.61428 NaN NaN NaN NaN NaN NaN NaN 53.172 1 56.367 55.867 56.867 3.1948 0 0 0 0.38417 1 11973 11973 1.0715 0 1 30612 16660 19469 19480 35344 35344 0.004518706013186602 PKTAEHKF 8 Unmodified _PKTAEHKF_ 0 0 0 L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|16|2|sense L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|16|2|sense L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 479.2774963378906 2 479.261259 956.507966 NaN NaN NaN NaN NaN NaN NaN 80.73 1 80.73 80.23 81.23 0 0 0 0 0.40659 1 19030 19030 1.8442 1.0506 1 30613 10831 19470 19481 35345 35345 0.02797204617331772 PKTAPPVSRK 10 Unmodified _PKTAPPVSRK_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.8299560546875 2 540.82984 1079.64513 0.59122 0.00031975 0.16685 9.0236E-05 0.75806 0.00040998 540.8296777910537 110.94 0.074341 114.47 114.43 114.5 3.5271 9 6 2 0 0 0 0.56078 1 27014 27014 3.2813 1.4371 1 273780 30614 16156 19471 19482 35346 35346 0.10849113496897189 PKTAPPVSRK 10 Unmodified _PKTAPPVSRK_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 540.82984 1079.64513 0.59122 0.00031975 0.16685 9.0236E-05 0.75806 0.00040998 540.8296777910537 110.94 0.074341 114.47 114.43 114.5 3.5271 0.18538 1.639E-05 NaN 3.2813 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 273780 30615 16156 19471 19482 0.10849113496897189 PKTAPPVSRK 10 Unmodified _PKTAPPVSRK_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 540.82984 1079.64513 0.38167 0.00020642 -0.012176 -6.5854E-06 0.36949 0.00019983 540.8298360091419 110.51 0.053192 114.14 114.12 114.18 3.6326 -0.14384 -0.00017725 NaN 3.2813 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 608390 30616 16156 19471 19482 0.10849113496897189 PKTAPPVSRK 10 Unmodified _PKTAPPVSRK_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|105|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 540.82984 1079.64513 0.5378 0.00029086 1.0628 0.00057478 1.6006 0.00086564 540.8304115521216 110.58 0.043289 114.24 114.23 114.28 3.6654 -0.041534 0.00098548 NaN 3.2813 9 3 3 NaN NaN NaN NaN 0 NaN NaN 0 368890 30617 16156 19471 19482 0.10849113496897189 PKTDPFVPI 9 Unmodified _PKTDPFVPI_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS UPN47_class_I_Rep_3 4 507.2861633300781 2 507.286943 1012.55933 0.31681 0.00016071 -0.8601 -0.00043632 -0.54329 -0.00027561 507.28614373237843 108.77 0.31287 112.31 112.17 112.48 3.5382 61 32 3 0 0 0 0.43153 1 26660 26660 6.2058 0 1 7379400 + 30618 20224 19472 19483 35347 35347 0.05355528591371694 PKTHLSLKTV 10 Unmodified _PKTHLSLKTV_ 0 0 0 REV__nc|ENSG00000113492|Q9BYV1-2|AGXT2 REV__nc|ENSG00000113492|Q9BYV1-2|AGXT2 MSMS UPN47_class_I_Rep_1 2 562.7620239257812 2 562.345323 1122.67609 NaN NaN NaN NaN NaN NaN NaN 111.67 1 115.24 114.74 115.74 3.572 0 0 0 0.53105 1 27554 27554 2.9952 1.151 1 + 30619 18508 19473 19484 35348 35348 0.11966266811123205 PKTHRSVL 8 Unmodified _PKTHRSVL_ 0 0 0 ENST00000237281.4_1_6:146120505-146120589:-|nuORF ENST00000237281.4_1_6:146120505-146120589:-|nuORF ENST00000237281.4_1_6:146120505-146120589:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 469.2823181152344 2 469.282526 936.550499 0.22198 0.00010417 -0.73673 -0.00034573 -0.51474 -0.00024156 469.2819877473022 107.59 0.15327 111.26 111.18 111.33 3.6724 32 20 2 0 0 0 0.82752 1 26355 26355 6.7232 0 1 1386500 30620 5894 19474 19485 35349 35349 0.07968599745561278 PKTHRSVL 8 Unmodified _PKTHRSVL_ 0 0 0 ENST00000237281.4_1_6:146120505-146120589:-|nuORF ENST00000237281.4_1_6:146120505-146120589:-|nuORF ENST00000237281.4_1_6:146120505-146120589:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 469.2830505371094 2 469.282526 936.550499 0.24401 0.00011451 -0.56563 -0.00026544 -0.32162 -0.00015093 469.2821579708493 107.54 0.1142 111.07 111.02 111.14 3.5345 22 17 2 0 0 0 0.82752 1 26024 26024 6.7232 1.9672 1 1064200 30621 5894 19474 19485 35350 35350 0.07968599745561278 PKTIAKKTKI 10 Unmodified _PKTIAKKTKI_ 0 0 0 L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|20|1|sense L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|20|1|sense L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|20|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 564.3800048828125 2 564.379166 1126.74378 0.45232 0.00025528 -0.002781 -1.5696E-06 0.44954 0.00025371 564.3790498468408 109.72 0.27509 109.72 109.61 109.88 0 40 23 2 0 0 0 0.56333 1 27024 27024 1.4819 1.4819 1 1048900 30622 14021 19475 19486 35351 35351 0.18547716741932163 PKTIQKKLK 9 Unmodified _PKTIQKKLK_ 0 0 0 L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|6|1|sense L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|6|1|sense L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.3662109375 2 542.366059 1082.71756 0.53487 0.0002901 0.16676 9.0445E-05 0.70163 0.00038054 542.3660014127903 108.23 0.68577 111.87 111.48 112.17 3.6355 167 59 4 0 0 0 0.42249 1 26563 26563 6.7232 2.3939 1 10887000 30623 13684 19476 19487 35352 35352 0.17951447570453638 PKTKATEP 8 Unmodified _PKTKATEP_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.24755859375 2 436.247818 870.481082 0.14913 6.5059E-05 -0.51395 -0.00022421 -0.36482 -0.00015915 436.2475005166349 109.21 0.33126 112.81 112.68 113.01 3.6046 69 37 2 0 0 0 0.82752 1 26919 26919 0.79363 0 1 6043200 30624 10188 19477 19488 35353 35353 0.04066096006124553 PKTKATEP 8 Unmodified _PKTKATEP_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.2475280761719 2 436.247818 870.481082 -0.051054 -2.2272E-05 -0.14481 -6.3172E-05 -0.19586 -8.5444E-05 436.2475340210531 109.18 0.34594 112.81 112.65 112.99 3.6321 103 43 3 0 0 0 0.82752 1 26495 26495 0.79363 0 1 6458900 30625 10188 19477 19488 35354 35354 0.04066096006124553 PKTKATEP 8 Unmodified _PKTKATEP_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 436.247818 870.481082 0.14913 6.5059E-05 -0.51395 -0.00022421 -0.36482 -0.00015915 436.2475005166349 109.21 0.33126 112.81 112.68 113.01 3.6046 -0.027587 -7.0132E-05 NaN 0.79363 69 37 2 NaN NaN NaN NaN 0 NaN NaN 0 6043200 30626 10188 19477 19488 0.04066096006124553 PKTKATEP 8 Unmodified _PKTKATEP_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 436.247818 870.481082 -0.051054 -2.2272E-05 -0.14481 -6.3172E-05 -0.19586 -8.5444E-05 436.2475340210531 109.18 0.34594 112.81 112.65 112.99 3.6321 -0.028396 0.00025195 NaN 0.79363 103 43 3 NaN NaN NaN NaN 0 NaN NaN 0 6458900 30627 10188 19477 19488 0.04066096006124553 PKTKATEP 8 Unmodified _PKTKATEP_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 436.247818 870.481082 0.10682 4.6601E-05 -0.34485 -0.00015044 -0.23803 -0.00010384 436.2475102179789 109.19 0.26453 112.86 112.75 113.01 3.6715 0.017854 7.7411E-05 NaN 0.79363 79 34 3 NaN NaN NaN NaN 0 NaN NaN 0 6357900 30628 10188 19477 19488 0.04066096006124553 PKTKATEP 8 Unmodified _PKTKATEP_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|48|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 436.247818 870.481082 0.13925 6.0747E-05 -0.49032 -0.0002139 -0.35107 -0.00015316 436.2475337316643 109.2 0.3015 112.88 112.75 113.05 3.6751 0.038129 -4.9514E-05 NaN 0.79363 74 42 2 NaN NaN NaN NaN 0 NaN NaN 0 6911800 30629 10188 19477 19488 0.04066096006124553 PKTKIKLSF 9 Unmodified _PKTKIKLSF_ 0 0 0 ENSG00000087338.5,GMCL1,chr2,+,I5.1,69841040,69842699|36|7.57|1|intron ENSG00000087338.5,GMCL1,chr2,+,I5.1,69841040,69842699|36|7.57|1|intron ENSG00000087338.5,GMCL1,chr2,+,I5.1,69841040,69842699|36|7.57|1|intron MSMS UPN46_class_I_Rep_3 1 531.3377075195312 2 531.33951 1060.66447 NaN NaN NaN NaN NaN NaN NaN 73.134 1 73.134 72.634 73.634 0 0 0 0 0.39518 1 16941 16941 1.8442 0 1 30630 1299 19478 19489 35355 35355 0.1365606978777123 PKTKKKHR 8 Unmodified _PKTKKKHR_ 0 0 0 REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|41|1|sense REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|41|1|sense MSMS UPN46_class_I_Rep_3 1 511.7191467285156 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 37.351 1 37.351 36.851 37.851 0 0 0 0 0.40746 1 7015 7015 0.69038 0 1 + 30631 29113 19479 19490 35356 35356 0.14092256799222014 PKTKNLERQRR 11 Unmodified _PKTKNLERQRR_ 0 0 0 REV__L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|14|3|sense REV__L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 475.95196533203125 3 475.951419 1424.83243 0.21376 0.00010174 0.38881 0.00018505 0.60257 0.00028679 475.95158994018266 101.9 0.48288 105.67 105.48 105.96 3.776 135 70 2 0 0 0 0.66279 1 24106 24106 2.084 0.62885 1 322180 + 30632 24740 19480 19491 35357 35357 0.1370052503430088 PKTKNLERQRR 11 Unmodified _PKTKNLERQRR_ 0 0 0 REV__L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|14|3|sense REV__L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|14|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 475.951419 1424.83243 0.31808 0.00015139 0.34447 0.00016395 0.66255 0.00031534 475.95159707344527 102.28 0.10755 105.79 105.71 105.82 3.5151 0.093769 -0.0001015 NaN 2.084 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 48260 + 30633 24740 19480 19491 0.1370052503430088 PKTKNLERQRR 11 Unmodified _PKTKNLERQRR_ 0 0 0 REV__L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|14|3|sense REV__L1M8_dup151|chr2:53999141-53999606:+|1.6695866135564303|0.0283678713614045|5.88|151.0|14|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 475.951419 1424.83243 0.10029 4.7733E-05 0.81429 0.00038756 0.91458 0.00043529 476.28615133901394 102.31 0.17551 105.79 105.66 105.84 3.4873 0.096787 0.00056934 NaN 2.084 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 91928 + 30634 24740 19480 19491 0.1370052503430088 PKTKPFTK 8 Unmodified _PKTKPFTK_ 0 0 0 REV__L1MEc_dup4880|chr4:73209236-73210447:+|2.3551848602869825|0.0484852022758113|5.6|151.0|4|1|sense REV__L1MEc_dup4880|chr4:73209236-73210447:+|2.3551848602869825|0.0484852022758113|5.6|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 473.78851318359375 2 473.789653 945.564752 NaN NaN NaN NaN NaN NaN NaN 107.66 1 111.34 110.84 111.84 3.6813 0 0 0 0.40472 1 25393 25393 4.3292 2.0265 1 + 30635 28459 19481 19492 35358 35358 0.08979252173833174 PKTKPGRRQI 10 Unmodified _PKTKPGRRQI_ 0 0 0 L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|43|2|sense L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|43|2|sense L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|43|2|sense MSMS UPN48_class_I_Rep_3 7 590.86669921875 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 95.937 1 99.845 99.345 100.35 3.9084 0 0 0 0.53105 1 22737 22737 3.2813 1.7994 1 30636 14711 19482 19493 35359 35359 0.13735296028130506 PKTLDTRT 8 Unmodified _PKTLDTRT_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MSMS UPN46_class_I_Rep_3 1 466.275146484375 2 466.263999 930.513445 NaN NaN NaN NaN NaN NaN NaN 108.03 1 108.03 107.53 108.53 0 0 0 0 0.39996 1 26375 26375 7.9102 0.62092 1 30637 4915 19483 19494 35360 35360 0.04540883409140406 PKTLKKKQL 9 Unmodified _PKTLKKKQL_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|46|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|46|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|46|2|sense MSMS UPN47_class_I_Rep_1 2 542.3660278320312 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 107.95 1 111.58 111.08 112.08 3.6355 0 0 0 0.39518 1 26483 26483 1.8442 0 1 30638 8451 19484 19495 35361 35361 0.17951447570453638 PKTLKQLQGFL 11 Unmodified _PKTLKQLQGFL_ 0 0 0 HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|109|2|sense;HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|159|3|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|109|2|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|109|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 636.8875732421875 2 636.887355 1271.76016 0.43352 0.0002761 0.47412 0.00030196 0.90764 0.00057806 636.8874218164299 108.66 0.57419 112.29 112.17 112.75 3.6321 165 68 3 0 0 0 0.40526 1 26436 26436 10.151 0.076642 1 16342000 30639 8044 19485 19496 35362 35362 0.1351479790803296 PKTLSLVF 8 Unmodified _PKTLSLVF_ 0 0 0 L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|65|1|anti-sense L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|65|1|anti-sense L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|65|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.7774353027344 2 452.778754 903.542954 0.060851 2.7552E-05 -2.5791 -0.0011678 -2.5182 -0.0011402 452.77739172835686 110.99 0.15598 114.51 114.43 114.59 3.5271 20 13 2 0 0 0 0.82752 1 27011 27011 7.2892 2.0586 1 1377100 30640 13232 19486 19497 35363 35363 0.08732447425290957 PKTNAKLNKK 10 Unmodified _PKTNAKLNKK_ 0 0 0 REV__L1MC5_dup3663|chr4:67486758-67487567:-|2.786133275381761|0.2302824489958324|3.6|151.0|9|1|sense REV__L1MC5_dup3663|chr4:67486758-67487567:-|2.786133275381761|0.2302824489958324|3.6|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 571.35693359375 2 571.356222 1140.69789 NaN NaN NaN NaN NaN NaN NaN 108.01 1 108.01 107.51 108.51 0 0 0 0 0.53105 1 26368 26368 12.241 2.0901 1 + 30641 27078 19487 19498 35364 35364 0.13317071559686156 PKTQIVRFTK 10 Unmodified _PKTQIVRFTK_ 0 0 0 L1PA6_dup3932|chrX:154668293-154671471:-|2.103566795484501|0.0278332345231112|6.24|151.0|80|3|sense L1PA6_dup3932|chrX:154668293-154671471:-|2.103566795484501|0.0278332345231112|6.24|151.0|80|3|sense L1PA6_dup3932|chrX:154668293-154671471:-|2.103566795484501|0.0278332345231112|6.24|151.0|80|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 406.91815185546875 3 406.583674 1216.72919 0.082156 3.3403E-05 0.38774 0.00015765 0.46989 0.00019105 406.9181428579621 104.36 0.083527 108.06 108 108.08 3.6991 14 11 2 0 0 0 0.56454 1 24700 24700 0.62683 0 1 5685000 30642 14622 19488 19499 35365 35365 0.12949644593800258 PKTRKDNY 8 Unmodified _PKTRKDNY_ 0 0 0 REV__L1PB1_dup5489|chr6:161121592-161124979:-|1.5917937959659936|0.0833535010544025|4.26|151.0|1|1|sense REV__L1PB1_dup5489|chr6:161121592-161124979:-|1.5917937959659936|0.0833535010544025|4.26|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 510.96893310546875 2 511.274898 1020.53524 NaN NaN NaN NaN NaN NaN NaN 96.115 1 99.529 99.029 100.03 3.414 0 0 0 0.40625 1 23860 23860 2.3027 0 1 + 30643 30444 19489 19500 35366 35366 0.025796881576980013 PKTRKKLDVI 10 Unmodified _PKTRKKLDVI_ 0 0 0 L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|13|1|sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|13|1|sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 599.4002075195312 2 599.387522 1196.76049 NaN NaN NaN NaN NaN NaN NaN 107.97 1 111.6 111.1 112.1 3.6313 0 0 0 0.53105 1 26074 26074 6.2058 0.47393 1 30644 11916 19490 19501 35367 35367 0.16998217627883605 PKTRMPLLQRN 11 Unmodified _PKTRMPLLQRN_ 0 0 0 L1P2_dup1445|chr16:74513361-74515564:+|1.6009734650541112|0.0337292035867836|5.57|151.0|5|1|sense L1P2_dup1445|chr16:74513361-74515564:+|1.6009734650541112|0.0337292035867836|5.57|151.0|5|1|sense L1P2_dup1445|chr16:74513361-74515564:+|1.6009734650541112|0.0337292035867836|5.57|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 451.93280029296875 3 451.930968 1352.77107 NaN NaN NaN NaN NaN NaN NaN 93.525 1 93.525 93.025 94.025 0 0 0 0 0.38417 1 22668 22668 1.1098 0.33322 1 30645 13488 19491 19502 35368 35368 0.10879877010688688 PKTRNNPL 8 Unmodified _PKTRNNPL_ 0 0 0 L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 470.2726135253906 2 470.272158 938.529764 NaN NaN NaN NaN NaN NaN NaN 86.589 1 86.589 86.089 87.089 0 0 0 0 0.4044 1 20703 20703 4.756 0 1 30646 12229 19492 19503 35369 35369 0.058040093658860314 PKTRNNPL 8 Unmodified _PKTRNNPL_ 0 0 0 L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 470.2720642089844 2 470.272158 938.529764 0.20396 9.5919E-05 -0.17864 -8.4011E-05 0.025322 1.1908E-05 470.2719776727439 82.956 0.70031 86.625 86.301 87.001 3.669 164 87 2 0 0 0 0.82752 1 19703 19703 4.756 0 1 424140 30647 12229 19492 19503 35370 35370 0.058040093658860314 PKTRNNPL 8 Unmodified _PKTRNNPL_ 0 0 0 L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense L1ME1_dup15679|chr8:120664469-120665169:-|1.100945316109665|0.0238610437533652|5.53|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 470.2720642089844 2 470.272158 938.529764 0.23272 0.00010944 -0.29232 -0.00013747 -0.059597 -2.8027E-05 470.2719431981355 82.941 0.68389 86.647 86.372 87.056 3.7066 196 91 3 0 0 0 0.82752 2 19656 19656;19684 4.756 0 1 367930 30648 12229 19492 19503 35371;35372 35371 0.058040093658860314 PKTRRGKAWI 10 Unmodified _PKTRRGKAWI_ 0 0 0 REV__ENST00000492095.5_1_1:16785414-16785925:+|nuORF REV__ENST00000492095.5_1_1:16785414-16785925:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 606.8690795898438 2 606.869831 1211.72511 0.5525 0.0003353 -1.0275 -0.00062355 -0.47499 -0.00028825 606.8691133658589 107.85 0.1852 111.53 111.47 111.66 3.6813 43 18 3 0 0 0 0.4965 1 25458 25458 12.241 1.4411 1 11222000 + 30649 22636 19493 19504 35373 35373 0.12771599890766083 PKTRTART 8 Unmodified _PKTRTART_ 0 0 0 REV__nc|ENSG00000147144|Q96HB5-2|CCDC120 REV__nc|ENSG00000147144|Q96HB5-2|CCDC120 MULTI-MSMS UPN48_class_I_Rep_3 7 465.777099609375 2 465.777608 929.540663 0.24727 0.00011518 -0.64352 -0.00029974 -0.39624 -0.00018456 465.7772098305443 73.009 0.58082 76.546 76.136 76.717 3.5373 65 47 2 0 0 0 0.82752 1 17035 17035 1.8442 0 1 227570 + 30650 19561 19494 19505 35374 35374 0.07307411740168845 PKTRTART 8 Unmodified _PKTRTART_ 0 0 0 REV__nc|ENSG00000147144|Q96HB5-2|CCDC120 REV__nc|ENSG00000147144|Q96HB5-2|CCDC120 MULTI-SECPEP UPN48_class_I_Rep_3 7 465.7769470214844 2 465.777608 929.540663 0.2489 0.00011593 -0.5834 -0.00027173 -0.3345 -0.0001558 465.7772191442634 72.164 0.46815 75.691 75.383 75.851 3.5266 69 50 2 0 0 0 0.72333 1 16848 16848 1.8442 0 1 165520 + 30651 19561 19494 19505 35375 35375 0.07307411740168845 PKTRVFML 8 Unmodified _PKTRVFML_ 0 0 0 REV__ENST00000495933.1_1_2:46839372-46840883:-|nuORF REV__ENST00000495933.1_1_2:46839372-46840883:-|nuORF MSMS UPN48_class_I_Rep_1 5 496.2932434082031 2 496.291505 990.568457 NaN NaN NaN NaN NaN NaN NaN 95.642 1 99.258 98.758 99.758 3.6161 0 0 0 0.40404 1 23039 23039 5.2307 2.6532 1 + 30652 22657 19495 19506 35376 35376 0.0727959867606387 PKTTKRTSI 9 Unmodified _PKTTKRTSI_ 0 0 0 REV__L1PB1_dup1117|chr2:63478072-63481899:+|1.4386676357596886|0.0506902241324578|4.83|151.0|62|2|sense REV__L1PB1_dup1117|chr2:63478072-63481899:+|1.4386676357596886|0.0506902241324578|4.83|151.0|62|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.3142700195312 2 516.314023 1030.61349 0.33726 0.00017413 0.097051 5.0109E-05 0.43431 0.00022424 516.3140083763391 90.334 1.1488 93.731 93.288 94.437 3.3976 463 155 5 0 0 0 0.48846 2 22568 22568;22779 1.8442 1.8442 1 4462600 + 30653 30308 19496 19507 35377;35378 35377 0.0994112074295117 PKTTRKQA 8 Unmodified _PKTTRKQA_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1 ENSG00000150760|ENST00000623213|DOCK1 ENSG00000150760|ENST00000623213|DOCK1 MULTI-MSMS UPN46_class_I_Rep_3 1 465.27972412109375 2 465.279983 928.545414 0.21977 0.00010226 -0.31082 -0.00014462 -0.091051 -4.2364E-05 465.27973330162007 83.26 0.75526 83.26 83.141 83.897 0 104 76 3 0 0 0 0.82752 1 19761 19761 7.2892 0 1 363750 30654 3571 19497 19508 35379 35379 0.07828295882939074 PKTTRKQA 8 Unmodified _PKTTRKQA_ 0 0 0 ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1 ENSG00000150760|ENST00000623213|DOCK1 ENSG00000150760|ENST00000623213|DOCK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 465.279983 928.545414 0.23076 0.00010737 -0.40215 -0.00018711 -0.17139 -7.9746E-05 465.2797151247051 79.687 0.3357 83.329 83.089 83.424 3.6423 -0.016265 -6.9215E-06 NaN 7.2892 64 42 2 NaN NaN NaN NaN 0 NaN NaN 0 177080 30655 3571 19497 19508 0.07828295882939074 PKTTSRHL 8 Unmodified _PKTTSRHL_ 0 0 0 L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|114|3|sense;L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|89|3|sense L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|114|3|sense L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|114|3|sense MSMS UPN46_class_I_Rep_3 1 470.27154541015625 2 470.272158 938.529764 NaN NaN NaN NaN NaN NaN NaN 86.464 1 86.464 85.964 86.964 0 0 0 0 0.40472 1 20669 20669 4.3292 0 1 30656 8530 19498 19509 35380 35380 0.05804009365908769 PKTTVLTAT 9 Unmodified _PKTTVLTAT_ 0 0 0 REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|8|2|sense REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 466.27728271484375 2 466.276575 930.538597 NaN NaN NaN NaN NaN NaN NaN 109.91 1 109.91 109.41 110.41 0 0 0 0 0.38639 1 27039 27039 3.9444 0 1 + 30657 30966 19499 19510 35381 35381 0.07054938211717854 PKTVQVQFV 9 Unmodified _PKTVQVQFV_ 0 0 0 REV__AluJo_dup12060|chr2:233065956-233066253:-|1.571324202906515|0.0024096853566097|9.35|151.0|17|2|anti-sense REV__AluJo_dup12060|chr2:233065956-233066253:-|1.571324202906515|0.0024096853566097|9.35|151.0|17|2|anti-sense MSMS UPN46_class_I_Rep_3 1 523.3035888671875 2 523.305667 1044.59678 NaN NaN NaN NaN NaN NaN NaN 80.851 1 80.851 80.351 81.351 0 0 0 0 0.37692 1 19066 19066 6.2058 1.8765 1 + 30658 16981 19500 19511 35382 35382 0.0762661985700106 PKTVYRSLR 9 Unmodified _PKTVYRSLR_ 0 0 0 REV__ENST00000488848.1_1_X:47102801-47104466:+|nuORF REV__ENST00000488848.1_1_X:47102801-47104466:+|nuORF MSMS UPN48_class_I_Rep_2 6 560.3365478515625 2 560.33529 1118.65603 NaN NaN NaN NaN NaN NaN NaN 100.68 1 104.43 103.93 104.93 3.7417 0 0 0 0.38784 1 23906 23906 3.5965 1.2938 1 + 30659 18191 19501 19512 35383 35383 0.10144515871161275 PKVCKRKRA 9 Unmodified _PKVCKRKRA_ 0 0 0 ENST00000498154.5_1_3:71630737-71631103:-|nuORF ENST00000498154.5_1_3:71630737-71631103:-|nuORF ENST00000498154.5_1_3:71630737-71631103:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 543.3406372070312 2 543.339852 1084.66515 0.37509 0.0002038 0.97984 0.00053238 1.3549 0.00073619 543.3402611712893 109.22 0.506 109.22 109.04 109.54 0 84 37 3 0 0 0 0.46434 1 26777 26777 4.3292 4.3292 1 4396800 30660 7117 19502 19513 35384 35384 0.126205859558695 PKVKAKKA 8 Unmodified _PKVKAKKA_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS UPN48_class_I_Rep_2 6 435.30029296875 2 435.300188 868.585822 0.14415 6.275E-05 0.2809 0.00012228 0.42505 0.00018503 435.30023787339456 63.68 0.18244 67.155 67.094 67.276 3.4743 25 13 3 0 0 0 0.82752 1 14343 14343 2.3027 0 1 517450 30661 1611 19503 19514 35385 35385 0.14627262273359065 PKVLFLLGA 9 Unmodified _PKVLFLLGA_ 0 0 0 ENST00000498520.1_1_2:206992517-206997685:-|nuORF;nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1 ENST00000498520.1_1_2:206992517-206997685:-|nuORF ENST00000498520.1_1_2:206992517-206997685:-|nuORF MSMS UPN48_class_I_Rep_2 6 479.3092956542969 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 57.573 1 61.087 60.587 61.587 3.5142 0 0 0 0.38299 1 12463 12463 4.756 0 1 30662 814 19504 19515 35386 35386 0.12585013213322327 PKVLNPWLNI 10 Unmodified _PKVLNPWLNI_ 0 0 0 ENST00000488045.1_1_4:83417190-83417331:-|nuORF;nc|ENSG00000249242|B9EJG8-2|TMEM150C;ENSG00000249242|ENST00000449862|TMEM150C ENST00000488045.1_1_4:83417190-83417331:-|nuORF ENST00000488045.1_1_4:83417190-83417331:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 597.8556518554688 2 597.355691 1192.69683 0.45155 0.00026974 -0.2532 -0.00015125 0.19836 0.00011849 597.8562120950553 83.482 0.57435 87.021 86.548 87.122 3.5386 85 58 2 0 0 0 0.56333 1 20906 20906 1.4819 0.15237 1 64736 30663 5734 19505 19516 35387 35387 0.10818857190815834 PKVYATPK 8 Unmodified _PKVYATPK_ 0 0 0 REV__ENSG00000239620|ENST00000465482|PRR20G REV__ENSG00000239620|ENST00000465482|PRR20G MULTI-MSMS UPN46_class_I_Rep_3 1 452.2691650390625 2 452.268553 902.522553 -0.021628 -9.7819E-06 1.6334 0.00073876 1.6118 0.00072898 452.2692523277884 32.186 0.092659 32.186 32.126 32.219 0 11 6 2 0 0 0 0.82752 1 5477 5477 2.3027 0 1 204120 + 30664 21323 19506 19517 35388 35388 0.06739276765472368 PKWFLWHW 8 Unmodified _PKWFLWHW_ 0 0 0 REV__ENST00000554703.1_1_14:57857320-57876115:+|nuORF REV__ENST00000554703.1_1_14:57857320-57876115:+|nuORF MSMS UPN48_class_I_Rep_2 6 600.0630493164062 2 600.311087 1198.60762 NaN NaN NaN NaN NaN NaN NaN 35.911 1 39.599 39.099 40.099 3.6877 0 0 0 0.40746 1 5982 5982 0.69038 0 1 + 30665 22984 19507 19518 35389 35389 0.01626067021925337 PKWLQKLCQP 10 Unmodified _PKWLQKLCQP_ 0 0 0 Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|81|2|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|81|2|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|81|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 620.84716796875 2 620.847176 1239.6798 -0.43424 -0.0002696 -0.22971 -0.00014261 -0.66395 -0.00041221 620.8469019703264 13.091 0.20201 16.465 16.391 16.593 3.3734 40 20 3 0 0 0 0.56333 1 219 219 1.4819 0 1 89730 30666 33247 19508 19519 35390 35390 0.0695461331331444 PKYVCFAMLIV 11 Unmodified _PKYVCFAMLIV_ 0 0 0 REV__ENST00000548936.1_1_12:110480181-110511233:-|nuORF REV__ENST00000548936.1_1_12:110480181-110511233:-|nuORF MSMS UPN47_class_I_Rep_1 2 642.347900390625 2 642.348163 1282.68177 NaN NaN NaN NaN NaN NaN NaN 91.304 1 95.009 94.509 95.509 3.7053 0 0 0 0.38417 1 22792 22792 1.4819 0 1 + 30667 20526 19509 19520 35391 35391 0.05173906006939433 PKYYTISSQ 9 Unmodified _PKYYTISSQ_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|139|2|anti-sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|139|2|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7787475585938 2 543.776939 1085.53933 NaN NaN NaN NaN NaN NaN NaN 42.909 1 46.271 45.771 46.771 3.3611 0 0 0 0.3967 1 8798 8798 1.4819 0 1 + 30668 31483 19510 19521 35392 35392 -2.2671392343909247E-05 PLAAIVDL 8 Unmodified _PLAAIVDL_ 0 0 0 REV__ENSG00000135519|ENST00000257981|KCNH3 REV__ENSG00000135519|ENST00000257981|KCNH3 MSMS UPN47_class_I_Rep_2 3 406.2503356933594 2 406.249829 810.485105 NaN NaN NaN NaN NaN NaN NaN 108.53 1 112.07 111.57 112.57 3.5333 0 0 0 0.40364 1 26336 26336 5.7604 0 1 + 30669 19143 19511 19522 35393 35393 0.07228185499832307 PLAAIVDL 8 Unmodified _PLAAIVDL_ 0 0 0 REV__ENSG00000135519|ENST00000257981|KCNH3 REV__ENSG00000135519|ENST00000257981|KCNH3 MSMS UPN48_class_I_Rep_3 7 406.2487487792969 2 406.249829 810.485105 NaN NaN NaN NaN NaN NaN NaN 108.59 1 112.27 111.77 112.77 3.6751 0 0 0 0.40364 1 25710 25710 5.7604 0 1 + 30670 19143 19511 19522 35394 35394 0.07228185499832307 PLAALARYI 9 Unmodified _PLAALARYI_ 0 0 0 REV__ENST00000347404.9_1_12:88974054-88974564:-|nuORF REV__ENST00000347404.9_1_12:88974054-88974564:-|nuORF MSMS UPN48_class_I_Rep_3 7 494.3013610839844 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 88.835 1 92.664 92.164 93.164 3.8293 0 0 0 0.39428 1 21079 21079 2.0598 0.21551 1 + 30671 21845 19512 19523 35395 35395 0.09746941065179726 PLAAPFKR 8 Unmodified _PLAAPFKR_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-SECPEP UPN46_class_I_Rep_3 1 449.7605895996094 2 450.276712 898.538872 0.18594 8.3724E-05 -3.5925 -0.0016176 -3.4065 -0.0015339 450.2749593237798 109.04 0.094368 109.04 108.98 109.07 0 7 3 3 0 0 0 0.72333 1 26704 26704 0.69038 0 1 462650 30672 4938 19513 19524 35396 35396 0.08554402722222676 PLAAPFKR 8 Unmodified _PLAAPFKR_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MSMS UPN47_class_I_Rep_2 3 450.2753601074219 2 450.276712 898.538872 NaN NaN NaN NaN NaN NaN NaN 86.301 1 89.734 89.234 90.234 3.4329 0 0 0 0.40746 1 21466 21466 0.69038 0 1 30673 4938 19513 19524 35397 35397 0.08554402722222676 PLAAPPEL 8 Unmodified _PLAAPPEL_ 0 0 0 REV__nc|ENSG00000148200|Q15406-5|NR6A1 REV__nc|ENSG00000148200|Q15406-5|NR6A1 MSMS UPN46_class_I_Rep_3 1 404.2328186035156 2 404.234179 806.453805 NaN NaN NaN NaN NaN NaN NaN 79.07 1 79.07 78.57 79.57 0 0 0 0 0.39408 1 18557 18557 10.183 0 1 + 30674 19580 19514 19525 35398 35398 0.04283612465758324 PLAAQEAVTP 10 Unmodified _PLAAQEAVTP_ 0 0 0 REV__L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|116|3|anti-sense REV__L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|116|3|anti-sense MSMS UPN48_class_I_Rep_1 5 498.7710876464844 2 498.771657 995.528761 NaN NaN NaN NaN NaN NaN NaN 95.007 1 98.623 98.123 99.123 3.6167 0 0 0 0.53105 1 22871 22871 1.3295 0 1 + 30675 25343 19515 19526 35399 35399 0.030817502063200664 PLAARTRTA 9 Unmodified _PLAARTRTA_ 0 0 0 REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 478.7852783203125 2 478.785433 955.556313 0.10449 5.003E-05 0.036409 1.7432E-05 0.1409 6.7462E-05 478.78538752924936 83.314 0.61004 86.664 86.411 87.021 3.35 122 68 2 0 0 0 0.43982 2 20888 20888;20922 5.7319 2.9952 1 167770 + 30676 21786 19516 19527 35400;35401 35400 0.0767569825721921 PLAARTRTA 9 Unmodified _PLAARTRTA_ 0 0 0 REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 478.7854309082031 2 478.785433 955.556313 0.13057 6.2516E-05 -0.083471 -3.9965E-05 0.047101 2.2551E-05 478.78536421499643 83.038 0.57719 86.626 86.319 86.896 3.5871 105 61 2 0 0 0 0.47763 1 19831 19831 2.9952 0.10602 1 252940 + 30677 21786 19516 19527 35402 35402 0.0767569825721921 PLAARTRTA 9 Unmodified _PLAARTRTA_ 0 0 0 REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 478.78570556640625 2 478.785433 955.556313 0.22776 0.00010905 -0.046896 -2.2453E-05 0.18087 8.6596E-05 478.78531758984263 82.97 0.58118 86.639 86.366 86.947 3.669 125 73 2 0 0 0 0.47197 2 19687 19687;19717 3.5965 0 1 236400 + 30678 21786 19516 19527 35403;35404 35403 0.0767569825721921 PLAASVLLQRT 11 Unmodified _PLAASVLLQRT_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.8563842773438 2 584.856055 1167.69756 0.40699 0.00023803 0.26181 0.00015312 0.6688 0.00039115 584.8561228841853 107.88 0.32777 111.51 111.43 111.76 3.6313 99 28 5 0 0 0 0.33002 1 26023 26023 12.873 0 1 26504000 30679 14145 19517 19528 35405 35405 0.12041651839831502 PLAASVLLQRT 11 Unmodified _PLAASVLLQRT_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 584.856055 1167.69756 0.49979 0.00029231 0.34547 0.00020205 0.84526 0.00049436 584.8560419108055 107.86 0.31587 111.52 111.46 111.78 3.6602 0.013072 -3.3967E-05 NaN 12.873 41 20 5 NaN NaN NaN NaN 0 NaN NaN 0 15604000 30680 14145 19517 19528 0.12041651839831502 PLAASVLLQRT 11 Unmodified _PLAASVLLQRT_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 584.856055 1167.69756 0.63487 0.00037131 0.26985 0.00015782 0.90472 0.00052913 584.8560367461297 107.89 0.25 111.42 111.36 111.61 3.5345 -0.086154 -0.00012242 NaN 12.873 64 29 3 NaN NaN NaN NaN 0 NaN NaN 0 13381000 30681 14145 19517 19528 0.12041651839831502 PLAASVLLQRT 11 Unmodified _PLAASVLLQRT_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 584.856055 1167.69756 0.50699 0.00029652 0.66761 0.00039046 1.1746 0.00068698 584.856398461099 107.86 0.25136 111.4 111.35 111.6 3.5382 -0.10861 0.00034285 NaN 12.873 62 27 3 NaN NaN NaN NaN 0 NaN NaN 0 15209000 30682 14145 19517 19528 0.12041651839831502 PLAASVLLQRT 11 Unmodified _PLAASVLLQRT_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 584.856055 1167.69756 0.48136 0.00028153 0.10812 6.3235E-05 0.58948 0.00034476 584.8561912325891 107.99 0.11688 111.67 111.59 111.71 3.6746 0.15736 -0.0003116 NaN 12.873 27 10 4 NaN NaN NaN NaN 0 NaN NaN 0 3917400 30683 14145 19517 19528 0.12041651839831502 PLAASVLLQRT 11 Unmodified _PLAASVLLQRT_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|198|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 584.856055 1167.69756 0.49902 0.00029186 0.50689 0.00029646 1.0059 0.00058831 584.8562162873322 107.85 0.1852 111.53 111.47 111.66 3.6813 0.020928 0.00015484 NaN 12.873 54 18 4 NaN NaN NaN NaN 0 NaN NaN 0 21858000 30684 14145 19517 19528 0.12041651839831502 PLAATARR 8 Unmodified _PLAATARR_ 0 0 0 ENSG00000204335|ENST00000375281|SP5 ENSG00000204335|ENST00000375281|SP5 ENSG00000204335|ENST00000375281|SP5 MULTI-MSMS UPN48_class_I_Rep_1 5 428.2615051269531 2 428.261594 854.508634 -0.066968 -2.868E-05 0.18863 8.0782E-05 0.12166 5.2102E-05 428.26170729775095 81.637 1.0363 85.212 84.722 85.758 3.5753 460 126 5 0 0 0 0.82752 1 19555 19555 7.9102 0 1 13331000 30685 5519 19518 19529 35406 35406 0.0755604405703707 PLAATFSYR 9 Unmodified _PLAATFSYR_ 0 0 0 HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|126|3|sense HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|126|3|sense HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|126|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2742919921875 2 513.274367 1024.53418 0.33385 0.00017136 -0.04711 -2.4181E-05 0.28674 0.00014717 513.2741368209673 87.976 0.38862 91.786 91.605 91.994 3.8104 68 46 2 0 0 0 0.47197 1 20883 20883 3.5965 1.019 1 184330 30686 8173 19519 19530 35407 35407 0.02289473788800933 PLAATFSYR 9 Unmodified _PLAATFSYR_ 0 0 0 HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|126|3|sense HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|126|3|sense HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|126|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 513.274367 1024.53418 0.33385 0.00017136 -0.04711 -2.4181E-05 0.28674 0.00014717 513.2741368209673 87.976 0.38862 91.786 91.605 91.994 3.8104 0.0047248 2.6133E-05 NaN 3.5965 68 46 2 NaN NaN NaN NaN 0 NaN NaN 0 184330 30687 8173 19519 19530 0.02289473788800933 PLAERLIRIM 10 Unmodified _PLAERLIRIM_ 0 0 0 nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|5|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|12|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|7|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|9|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|1|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|11|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|6|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|3|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|8|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|4|intron;ENSG00000038532.16,CLEC16A,chr16,+,I11.1,11003306,11020192|93|11.38|10|intron nc|ENSG00000038532|Q2KHT3-2|CLEC16A nc|ENSG00000038532|Q2KHT3-2|CLEC16A MSMS UPN46_class_I_Rep_3 1 606.3700561523438 2 606.368275 1210.722 NaN NaN NaN NaN NaN NaN NaN 88.944 1 88.944 88.444 89.444 0 0 0 0 0.53105 1 21382 21382 1.1933 0.59184 1 30688 859 19520 19531 35408 35408 0.12506588721726075 PLAKGRKP 8 Unmodified _PLAKGRKP_ 0 0 0 REV__L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|118|3|sense REV__L1PA4_dup11189|chr18:45694473-45700593:+|2.0836557240426163|0.0274022851981055|6.25|150.0|118|3|sense MSMS UPN48_class_I_Rep_2 6 433.7812805175781 2 433.782162 865.549771 NaN NaN NaN NaN NaN NaN NaN 64.204 1 67.678 67.178 68.178 3.4743 0 0 0 0.40604 1 14495 14495 2.5775 0 1 + 30689 29598 19521 19532 35409 35409 0.11161805096503485 PLAKLRKKE 9 Unmodified _PLAKLRKKE_ 0 0 0 L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|75|2|sense L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|75|2|sense L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|75|2|sense MSMS UPN46_class_I_Rep_3 1 541.8560791015625 2 541.855858 1081.69716 NaN NaN NaN NaN NaN NaN NaN 65.461 1 65.461 64.961 65.961 0 0 0 0 0.4007 1 14796 14796 0.52476 0 1 30690 9301 19522 19533 35410 35410 0.15958276910646418 PLAKQQSY 8 Unmodified _PLAKQQSY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;ENST00000522802.5_1_8:100396536-100436568:+|nuORF ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN48_class_I_Rep_1 5 467.75323486328125 2 467.753267 933.491981 0.077584 3.629E-05 -0.04899 -2.2915E-05 0.028594 1.3375E-05 467.75313236861695 50.734 1.0065 54.259 53.773 54.78 3.5246 146 65 3 0 0 0 0.82752 2 10413 10413;10459 13.508 13.508 1 855060 30691 2763 19523 19534 35411;35412 35411 0.022574983804247495 PLAKQQSY 8 Unmodified _PLAKQQSY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;ENST00000522802.5_1_8:100396536-100436568:+|nuORF ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN48_class_I_Rep_2 6 467.7530517578125 2 467.753267 933.491981 0.17529 8.1993E-05 -0.16103 -7.5324E-05 0.01426 6.6699E-06 467.7531012618153 50.43 0.84691 54.124 53.807 54.654 3.6946 125 50 3 0 0 0 0.82752 4 10410 10281;10322;10363;10410 19.439 4.8573 1 830650 30692 2763 19523 19534 35413;35414;35415;35416 35416 0.022574983804247495 PLAKQQSY 8 Unmodified _PLAKQQSY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;ENST00000522802.5_1_8:100396536-100436568:+|nuORF ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN48_class_I_Rep_3 7 467.753173828125 2 467.753267 933.491981 0.085837 4.0151E-05 -0.1236 -5.7812E-05 -0.037758 -1.7662E-05 467.7531456540117 50.641 1.0002 54.262 53.844 54.844 3.621 149 64 3 0 0 0 0.82752 3 10247 10247;10286;10324 16.942 1.0951 1 997580 30693 2763 19523 19534 35417;35418;35419 35417 0.022574983804247495 PLALLFHQ 8 Unmodified _PLALLFHQ_ 0 0 0 L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|33|2|anti-sense L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|33|2|anti-sense L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|33|2|anti-sense MSMS UPN47_class_I_Rep_1 2 469.77886962890625 2 469.776545 937.538538 NaN NaN NaN NaN NaN NaN NaN 83.979 1 87.545 87.045 88.045 3.5655 0 0 0 0.40404 1 21011 21011 5.2307 0 1 30694 11855 19524 19535 35420 35420 0.06726983002374709 PLAPAPTQAP 10 Unmodified _PLAPAPTQAP_ 0 0 0 REV__ENSG00000175390|ENST00000651655|EIF3F REV__ENSG00000175390|ENST00000651655|EIF3F MSMS UPN47_class_I_Rep_3 4 481.75653076171875 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 51.596 1 54.812 54.312 55.312 3.2163 0 0 0 0.53105 1 11496 11496 6.2058 3.6283 1 + 30695 20554 19525 19536 35421 35421 0.040980714145121055 PLAPHPPQA 9 Unmodified _PLAPHPPQA_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 464.25445556640625 2 464.255977 926.497401 0.18356 8.5218E-05 -2.5197 -0.0011698 -2.3361 -0.0010845 464.25507763091014 74.44 0.48536 78.03 77.732 78.217 3.59 84 53 2 0 0 0 0.45688 1 17496 17496 4.756 0 1 127580 30696 14744 19526 19537 35422 35422 0.03121221962896925 PLAPHPPQA 9 Unmodified _PLAPHPPQA_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 464.25616455078125 2 464.255977 926.497401 0.24025 0.00011154 -0.68866 -0.00031972 -0.44841 -0.00020818 464.2556791512904 74.75 0.47456 78.316 78.018 78.492 3.5659 92 50 2 0 0 0 0.48414 1 17481 17481 2.3027 0 1 146340 30697 14744 19526 19537 35423 35423 0.03121221962896925 PLAPHPPQA 9 Unmodified _PLAPHPPQA_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 464.255977 926.497401 0.094518 4.388E-05 -0.86554 -0.00040183 -0.77102 -0.00035795 464.255604942441 74.88 0.14847 78.37 78.288 78.436 3.49 0.044751 6.0238E-05 NaN 2.3027 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 109610 30698 14744 19526 19537 0.03121221962896925 PLAPHPPQA 9 Unmodified _PLAPHPPQA_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 464.255977 926.497401 0.18358 8.5227E-05 -1.1986 -0.00055646 -1.015 -0.00047123 464.25548315634205 74.7 0.15464 78.29 78.217 78.372 3.59 -0.035153 -0.00024901 NaN 2.3027 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 106420 30699 14744 19526 19537 0.03121221962896925 PLAPHPPQA 9 Unmodified _PLAPHPPQA_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|112|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 464.255977 926.497401 0.24025 0.00011154 -0.68866 -0.00031972 -0.44841 -0.00020818 464.2556791512904 74.75 0.47456 78.316 78.018 78.492 3.5659 -0.0095976 0.00022447 NaN 2.3027 92 50 2 NaN NaN NaN NaN 0 NaN NaN 0 146340 30700 14744 19526 19537 0.03121221962896925 PLAQLLLL 8 Unmodified _PLAQLLLL_ 0 0 0 REV__ENSG00000166272|ENST00000448841|WBP1L REV__ENSG00000166272|ENST00000448841|WBP1L MULTI-MSMS UPN47_class_I_Rep_1 2 440.7996520996094 2 440.796946 879.57934 -0.42874 -0.00018899 2.9001 0.0012783 2.4713 0.0010893 440.7997198785305 23.616 1.3254 27.346 27.02 28.345 3.7298 152 111 2 0 0 0 0.82752 1 2974 2974 0.79363 0 1 91524 + 30701 20164 19527 19538 35424 35424 0.1347332432201256 PLAQLLLL 8 Unmodified _PLAQLLLL_ 0 0 0 REV__ENSG00000166272|ENST00000448841|WBP1L REV__ENSG00000166272|ENST00000448841|WBP1L MULTI-MSMS UPN48_class_I_Rep_3 7 440.79864501953125 2 440.796946 879.57934 0.15156 6.6809E-05 2.2552 0.0009941 2.4068 0.0010609 440.79920170843496 61.604 0.48574 65.117 64.799 65.284 3.5128 48 40 2 0 0 0 0.82752 1 13555 13555 0.79363 0 1 121370 + 30702 20164 19527 19538 35425 35425 0.1347332432201256 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MSMS UPN46_class_I_Rep_3 1 647.4454345703125 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 108.45 1 108.45 107.95 108.95 0 0 0 0 0.38417 1 26523 26523 1.1933 0 1 30703 13638 19528 19539 35426 35426 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 647.4453735351562 2 647.445706 1292.87686 0.7554 0.00048908 -1.2511 -0.00081002 -0.4957 -0.00032094 647.4444248228294 108.66 0.13171 108.66 108.55 108.68 0 26 17 3 0 0 0 22.551 1 26573 26573 1.1933 0 1 2256700 30704 13638 19528 19539 35427 35427 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MSMS UPN47_class_I_Rep_1 2 647.4443359375 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 108.41 1 112.05 111.55 112.55 3.6355 0 0 0 0.38417 1 26635 26635 1.1933 0 1 30705 13638 19528 19539 35428 35428 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 647.9473266601562 2 647.445706 1292.87686 0.63441 0.00041075 -0.76432 -0.00049486 -0.12991 -8.4112E-05 647.445018313131 108.03 0.1787 111.56 111.42 111.6 3.5333 35 22 2 0 0 0 0.67264 2 26161 26161;26165 1.1933 0 1 2034100 30706 13638 19528 19539 35429;35430 35429 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MSMS UPN47_class_I_Rep_2 3 647.4451293945312 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 108.31 1 111.84 111.34 112.34 3.5333 0 0 0 0.38417 1 26258 26258 1.1933 0 1 30707 13638 19528 19539 35431 35431 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 647.4454345703125 2 647.445706 1292.87686 0.43865 0.000284 -0.90521 -0.00058608 -0.46656 -0.00030207 647.4448965624148 108.06 0.47457 111.69 111.43 111.91 3.6313 87 39 3 0 0 0 0.67264 1 26151 26151 1.1933 0 1 2819700 30708 13638 19528 19539 35432 35432 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 647.4450073242188 2 647.445706 1292.87686 0.50158 0.00032475 -1.2111 -0.00078415 -0.70956 -0.0004594 647.4445388953214 108.01 0.11688 111.69 111.59 111.71 3.6746 23 10 3 0 0 0 0.65271 1 25576 25576 2.9952 0 1 3879000 30709 13638 19528 19539 35433 35433 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 647.4450073242188 2 647.445706 1292.87686 0.50147 0.00032468 -0.91255 -0.00059083 -0.41108 -0.00026615 647.4449343719858 108.17 0.3595 111.84 111.72 112.08 3.6746 64 40 2 0 0 0 0.67264 1 25617 25617 1.1933 0 1 4137600 30710 13638 19528 19539 35434 35434 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 647.4456176757812 2 647.445706 1292.87686 0.65095 0.00042146 -0.89458 -0.00057919 -0.24362 -0.00015773 647.4449683372438 108.2 0.32587 111.88 111.76 112.09 3.6813 40 34 2 0 0 0 0.67264 1 25583 25583 1.1933 0 1 3433900 30711 13638 19528 19539 35435 35435 0.24213580918444677 PLARLIKKKRA 11 Unmodified _PLARLIKKKRA_ 0 0 0 L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|150|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 647.445706 1292.87686 0.6514 0.00042174 -1.1076 -0.00071712 -0.45622 -0.00029538 647.4448929477137 108.06 0.080879 111.74 111.67 111.75 3.6813 0.087103 -0.00020837 NaN 2.9952 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2579200 30712 13638 19528 19539 0.24213580918444677 PLARLTQKKR 10 Unmodified _PLARLTQKKR_ 0 0 0 L1PA7_dup6227|chr7:107532987-107537108:+|1.133626496963562|0.0189085727349058|5.91|150.0|70|2|sense L1PA7_dup6227|chr7:107532987-107537108:+|1.133626496963562|0.0189085727349058|5.91|150.0|70|2|sense L1PA7_dup6227|chr7:107532987-107537108:+|1.133626496963562|0.0189085727349058|5.91|150.0|70|2|sense MSMS UPN48_class_I_Rep_3 7 404.264404296875 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 107.65 1 111.33 110.83 111.83 3.6813 0 0 0 0.53105 1 25389 25389 1.7423 0.41263 1 30713 14868 19529 19540 35436 35436 0.17048155579254853 PLARRILL 8 Unmodified _PLARRILL_ 0 0 0 L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 476.3268737792969 2 476.326737 950.63892 0.23757 0.00011316 0.023877 1.1373E-05 0.26144 0.00012453 476.3265812231735 108.31 0.89658 111.95 111.68 112.58 3.6355 199 89 4 0 0 0 0.82752 1 26542 26542 0.79363 0 1 13800000 30714 14595 19530 19541 35437 35437 0.1616264005605217 PLARRILL 8 Unmodified _PLARRILL_ 0 0 0 L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.3269348144531 2 476.326737 950.63892 0.32245 0.00015359 0.43117 0.00020538 0.75362 0.00035897 476.32694324877696 108.08 0.31689 111.62 111.31 111.63 3.5333 64 37 2 0 0 0 0.82752 1 26189 26189 0.79363 0 1 11127000 30715 14595 19530 19541 35438 35438 0.1616264005605217 PLARRILL 8 Unmodified _PLARRILL_ 0 0 0 L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense MSMS UPN47_class_I_Rep_3 4 476.32708740234375 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 108.09 1 111.63 111.13 112.13 3.5382 0 0 0 0.40738 1 26424 26424 0.79363 0 1 30716 14595 19530 19541 35439 35439 0.1616264005605217 PLARRILL 8 Unmodified _PLARRILL_ 0 0 0 L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|300|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.326904296875 2 476.326737 950.63892 0.21482 0.00010233 0.32946 0.00015693 0.54428 0.00025925 476.32676865288323 108.25 0.48877 111.94 111.67 112.15 3.6813 139 48 4 0 0 0 0.82752 1 25563 25563 0.79363 0 1 49474000 30717 14595 19530 19541 35440 35440 0.1616264005605217 PLASRRLTRK 10 Unmodified _PLASRRLTRK_ 0 0 0 ENST00000510363.1_1_5:177580490-177580818:-|nuORF;ENSG00000145912|ENST00000274606|NHP2 ENST00000510363.1_1_5:177580490-177580818:-|nuORF ENST00000510363.1_1_5:177580490-177580818:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 599.38134765625 2 599.380563 1196.74657 0.50877 0.00030495 -0.62496 -0.00037459 -0.11619 -6.9643E-05 599.3802595505995 95.565 0.32413 98.974 98.726 99.051 3.4095 62 44 2 0 0 0 0.56333 1 23733 23733 1.4819 0 1 214340 30718 3418 19531 19542 35441 35441 0.15606984919440947 PLATIPLFF 9 Unmodified _PLATIPLFF_ 0 0 0 L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|21|3|anti-sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|21|3|anti-sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|21|3|anti-sense MSMS UPN46_class_I_Rep_3 1 509.8040771484375 2 509.802229 1017.5899 NaN NaN NaN NaN NaN NaN NaN 81.072 1 81.072 80.572 81.572 0 0 0 0 0.38299 1 19127 19127 4.756 0 1 30719 10714 19532 19543 35442 35442 0.08181306976428004 PLATIPLFF 9 Unmodified _PLATIPLFF_ 0 0 0 L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|21|3|anti-sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|21|3|anti-sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_2 6 509.8040466308594 2 509.802229 1017.5899 NaN NaN NaN NaN NaN NaN NaN 76.918 1 80.53 80.03 81.03 3.6116 0 0 0 0.39428 1 18177 18177 2.0598 0 1 30720 10714 19532 19543 35443 35443 0.08181306976428004 PLAVHQVVDE 10 Unmodified _PLAVHQVVDE_ 0 0 0 REV__nc|ENSG00000144893|Q86YW9-4|MED12L REV__nc|ENSG00000144893|Q86YW9-4|MED12L MSMS UPN47_class_I_Rep_2 3 554.1759033203125 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 113.77 1 117.29 116.79 117.79 3.5109 0 0 0 0.53105 1 27685 27685 1.3295 0.72803 1 + 30721 17448 19533 19544 35444 35444 0.028208241263882883 PLAVIILLSI 10 Unmodified _PLAVIILLSI_ 0 0 0 L1MB2_dup213|chr1:77571251-77571952:+|1.332759835504018|0.0778927345623915|4.1|151.0|35|2|anti-sense L1MB2_dup213|chr1:77571251-77571952:+|1.332759835504018|0.0778927345623915|4.1|151.0|35|2|anti-sense L1MB2_dup213|chr1:77571251-77571952:+|1.332759835504018|0.0778927345623915|4.1|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7982177734375 2 526.359911 1050.70527 NaN NaN NaN NaN NaN NaN NaN 33.313 1 36.752 36.252 37.252 3.4398 0 0 0 0.53105 1 5885 5885 0.45834 0 1 30722 10221 19534 19545 35445 35445 0.18194411107424457 PLAVILVMY 9 Unmodified _PLAVILVMY_ 0 0 0 ENSG00000170214|ENST00000306675|ADRA1B ENSG00000170214|ENST00000306675|ADRA1B ENSG00000170214|ENST00000306675|ADRA1B MULTI-MSMS UPN46_class_I_Rep_3 1 509.8037109375 2 509.803914 1017.59328 0.30666 0.00015634 -0.18054 -9.2038E-05 0.12613 6.43E-05 509.80370070271255 81.767 0.25069 81.767 81.627 81.878 0 46 24 3 0 0 0 0.48414 1 19349 19349 2.3027 2.3027 1 295580 30723 4460 19535 19546 35446 35446 0.08518233758775295 PLAVILVMY 9 Unmodified _PLAVILVMY_ 0 0 0 ENSG00000170214|ENST00000306675|ADRA1B ENSG00000170214|ENST00000306675|ADRA1B ENSG00000170214|ENST00000306675|ADRA1B MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 509.803914 1017.59328 0.31931 0.00016279 -0.21316 -0.00010867 0.10615 5.4116E-05 509.8036612222606 78.046 0.15343 81.667 81.63 81.783 3.6216 -0.04989 -1.9007E-05 NaN 2.3027 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 114150 30724 4460 19535 19546 0.08518233758775295 PLAVPTQKSPL 11 Unmodified _PLAVPTQKSPL_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS UPN47_class_I_Rep_2 3 575.8431396484375 2 575.845156 1149.67576 NaN NaN NaN NaN NaN NaN NaN 83.551 1 86.963 86.463 87.463 3.4116 0 0 0 0.38417 1 20830 20830 2.7352 0 1 30725 4548 19536 19547 35447 35447 0.10690847091291289 PLAWLLSPGY 10 Unmodified _PLAWLLSPGY_ 0 0 0 LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|58|3|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|58|3|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|58|3|sense MSMS UPN47_class_I_Rep_1 2 558.8057861328125 2 558.808042 1115.60153 NaN NaN NaN NaN NaN NaN NaN 54.732 1 58.233 57.733 58.733 3.5014 0 0 0 0.53105 1 12369 12369 3.5965 1.5367 1 30726 15662 19537 19548 35448 35448 0.04835503999765933 PLCGPTTLCS 10 Unmodified _PLCGPTTLCS_ 0 0 0 L1MB7_dup11384|chr9:131453852-131454282:-|1.979075629187724|0.0569598120842236|5.12|151.0|29|3|anti-sense L1MB7_dup11384|chr9:131453852-131454282:-|1.979075629187724|0.0569598120842236|5.12|151.0|29|3|anti-sense L1MB7_dup11384|chr9:131453852-131454282:-|1.979075629187724|0.0569598120842236|5.12|151.0|29|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.71966552734375 2 496.232996 990.451438 0.21478 0.00010658 -3.9078 -0.0019392 -3.693 -0.0018326 496.2314667231437 37.642 0.044365 37.642 37.608 37.653 0 4 2 2 0 0 0 0.56078 1 7097 7097 3.2813 0 1 40800 30727 10682 19538 19549 35449 35449 -0.04416927325848974 PLCLHHILL 9 Unmodified _PLCLHHILL_ 0 0 0 L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|32|2|anti-sense L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|32|2|anti-sense L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8140258789062 2 529.812605 1057.61066 NaN NaN NaN NaN NaN NaN NaN 35.629 1 39.296 38.796 39.796 3.6667 0 0 0 0.381 1 5801 5801 5.2307 0 1 30728 10421 19539 19550 35450 35450 0.08415574084460786 PLCRFGFPLF 10 Unmodified _PLCRFGFPLF_ 0 0 0 L1PBa_dup73|chr1:159026599-159029679:-|2.4068389986311964|0.3950056332855859|2.61|151.0|182|3|anti-sense L1PBa_dup73|chr1:159026599-159029679:-|2.4068389986311964|0.3950056332855859|2.61|151.0|182|3|anti-sense L1PBa_dup73|chr1:159026599-159029679:-|2.4068389986311964|0.3950056332855859|2.61|151.0|182|3|anti-sense MSMS UPN47_class_I_Rep_3 4 598.8184204101562 2 598.817887 1195.62122 NaN NaN NaN NaN NaN NaN NaN 65.913 1 69.099 68.599 69.599 3.1853 0 0 0 0.53105 1 15862 15862 3.9444 0.66309 1 30729 15389 19540 19551 35451 35451 0.031235567388648633 PLCRVWAAL 9 Unmodified _PLCRVWAAL_ 0 0 0 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-MSMS UPN47_class_I_Rep_1 2 514.7896118164062 2 514.78913 1027.56371 0.094391 4.8591E-05 0.25779 0.00013271 0.35218 0.0001813 514.789232046216 49.238 0.92247 52.897 52.525 53.448 3.6592 138 64 3 0 0 0 0.25207 1 10666 10666 16.942 16.942 1 328460 30730 5338 19541 19552 35452 35452 0.05102714533290964 PLDCEIQGGVC 11 Unmodified _PLDCEIQGGVC_ 0 0 0 REV__nc|ENSG00000285253|Q6N043-4|ZNF280D REV__nc|ENSG00000285253|Q6N043-4|ZNF280D MSMS UPN48_class_I_Rep_3 7 567.2533569335938 2 567.251917 1132.48928 NaN NaN NaN NaN NaN NaN NaN 28.696 1 32.439 31.939 32.939 3.7424 0 0 0 0.38417 1 3935 3935 1.3295 0.13619 1 + 30731 32129 19542 19553 35453 35453 -0.07166461131055257 PLDIKTVL 8 Unmodified _PLDIKTVL_ 0 0 0 nc|ENSG00000143994|Q96SE0-3|ABHD1 nc|ENSG00000143994|Q96SE0-3|ABHD1 nc|ENSG00000143994|Q96SE0-3|ABHD1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.2849426269531 2 449.784036 897.553519 -0.22836 -0.00010271 -0.24458 -0.00011001 -0.47294 -0.00021272 449.7838142713492 65.101 0.35718 68.357 68.262 68.62 3.2556 40 28 2 0 0 0 0.82752 1 15570 15570 10.074 0 1 56450 30732 16701 19543 19554 35454 35454 0.10064430079705744 PLDVLLLYHL 10 Unmodified _PLDVLLLYHL_ 0 0 0 L1MA3_dup4924|chr9:137657528-137658099:-|1.4298512350164445|0.0128182200285701|6.8|151.0|36|2|anti-sense L1MA3_dup4924|chr9:137657528-137658099:-|1.4298512350164445|0.0128182200285701|6.8|151.0|36|2|anti-sense L1MA3_dup4924|chr9:137657528-137658099:-|1.4298512350164445|0.0128182200285701|6.8|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 598.3592529296875 2 598.357899 1194.70125 NaN NaN NaN NaN NaN NaN NaN 83.251 1 86.933 86.433 87.433 3.6814 0 0 0 0.53105 1 19781 19781 1.6526 0 1 30733 9557 19544 19555 35455 35455 0.11168321613718035 PLEARRAT 8 Unmodified _PLEARRAT_ 0 0 0 ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 457.2642517089844 2 457.264333 912.514114 0.046616 2.1316E-05 0.08582 3.9242E-05 0.13244 6.0558E-05 457.2642488795614 85.5 0.78735 89.106 88.794 89.581 3.6059 194 84 3 0 0 0 0.82752 1 20429 20429 4.3292 4.3292 1 692640 30734 4959 19545 19556 35456 35456 0.054357228488470355 PLEARRAT 8 Unmodified _PLEARRAT_ 0 0 0 ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 457.264333 912.514114 0.20481 9.3652E-05 0.014533 6.6454E-06 0.21934 0.0001003 457.264194056125 89.096 0.32359 89.096 88.808 89.132 0 -0.0051451 -5.0721E-05 NaN 4.3292 80 32 3 NaN NaN NaN NaN 0 NaN NaN 0 1000500 30735 4959 19545 19556 0.054357228488470355 PLEARRAT 8 Unmodified _PLEARRAT_ 0 0 0 ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron ENSG00000182557.8,SPNS3,chr17,+,I2.1,4439724,4444975|38|45.91|2|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 457.264333 912.514114 0.046616 2.1316E-05 0.08582 3.9242E-05 0.13244 6.0558E-05 457.2642488795614 85.5 0.78735 89.106 88.794 89.581 3.6059 0.0051451 1.4473E-05 NaN 4.3292 194 84 3 NaN NaN NaN NaN 0 NaN NaN 0 692640 30736 4959 19545 19556 0.054357228488470355 PLEHPFNK 8 Unmodified _PLEHPFNK_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_1 2 491.2615661621094 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 58.146 1 61.583 61.083 62.083 3.437 0 0 0 0.40746 1 13404 13404 0.69038 0 1 30737 2630 19546 19557 35457 35457 0.016932046173337767 PLEKLCHL 8 Unmodified _PLEKLCHL_ 0 0 0 REV__nc|ENSG00000133619|A5PL33-3|KRBA1 REV__nc|ENSG00000133619|A5PL33-3|KRBA1 MSMS UPN48_class_I_Rep_1 5 476.76806640625 2 476.767863 951.521173 NaN NaN NaN NaN NaN NaN NaN 31.606 1 35.14 34.64 35.64 3.5342 0 0 0 0.40738 1 4697 4697 0.79363 0 1 + 30738 19060 19547 19558 35458 35458 0.0434731940505344 PLELKVHLTF 10 Unmodified _PLELKVHLTF_ 0 0 0 L1ME3A_dup14970|chr20:20475265-20476674:+|1.0422198267277818|0.4561479562139559|1.19|151.0|21|2|sense L1ME3A_dup14970|chr20:20475265-20476674:+|1.0422198267277818|0.4561479562139559|1.19|151.0|21|2|sense L1ME3A_dup14970|chr20:20475265-20476674:+|1.0422198267277818|0.4561479562139559|1.19|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 598.855224609375 2 598.855524 1195.69649 NaN NaN NaN NaN NaN NaN NaN 90.597 1 94.223 93.723 94.723 3.626 0 0 0 0.53105 1 21773 21773 1.4819 0 1 30739 12653 19548 19559 35459 35459 0.1064743747092507 PLELLMIL 8 Unmodified _PLELLMIL_ 0 0 0 PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|48|3|sense PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|48|3|sense PRIMA4-int_dup58|chr2:168501085-168502949:-|2.001585333315455|0.0123855332228291|7.34|151.0|48|3|sense MSMS UPN48_class_I_Rep_1 5 471.2926940917969 2 471.29064 940.566726 NaN NaN NaN NaN NaN NaN NaN 107.09 1 110.72 110.22 111.22 3.6299 0 0 0 0.40604 1 25799 25799 2.5775 0 1 30740 16894 19549 19560 35460 35460 0.09406544867454159 PLEQPVAPE 9 Unmodified _PLEQPVAPE_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MSMS UPN46_class_I_Rep_3 1 490.2578430175781 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 92.483 1 92.483 91.983 92.983 0 0 0 0 0.39518 1 22383 22383 1.8442 0 1 30741 4742 19550 19561 35461 35461 0.012100613149982564 PLEVRTAR 8 Unmodified _PLEVRTAR_ 0 0 0 REV__MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|44|3|sense REV__MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 471.28033447265625 2 471.279983 940.545414 0.10145 4.7811E-05 -0.28643 -0.00013499 -0.18498 -8.7177E-05 471.279859683721 83.5 0.40961 87.087 87.045 87.455 3.5871 64 47 2 0 0 0 0.82752 1 19970 19970 2.3027 0 1 202030 + 30742 31875 19551 19562 35462 35462 0.0727629588294576 PLEVSSVVI 9 Unmodified _PLEVSSVVI_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN48_class_I_Rep_1 5 471.7786865234375 2 471.778951 941.543348 0.1233 5.8168E-05 0.095537 4.5072E-05 0.21883 0.00010324 471.77881186219224 74.13 0.18268 77.62 77.49 77.673 3.49 20 17 2 0 0 0 0.35081 1 17479 17479 10.824 2.2306 1 245540 30743 3707 19552 19563 35463 35463 0.070238223544834 PLFAMHTFIY 10 Unmodified _PLFAMHTFIY_ 0 0 0 REV__L1ME4c_dup6790|chr14:50781929-50782669:+|1.0573553109597813|0.016999021473252|5.96|151.0|50|3|anti-sense REV__L1ME4c_dup6790|chr14:50781929-50782669:+|1.0573553109597813|0.016999021473252|5.96|151.0|50|3|anti-sense MSMS UPN46_class_I_Rep_3 1 619.830810546875 2 620.315177 1238.6158 NaN NaN NaN NaN NaN NaN NaN 61.473 1 61.473 60.973 61.973 0 0 0 0 0.53105 1 13683 13683 1.8442 0.19162 1 + 30744 28322 19553 19564 35464 35464 0.006038331564013788 PLFCRWWL 8 Unmodified _PLFCRWWL_ 0 0 0 REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF MSMS UPN48_class_I_Rep_1 5 560.7813720703125 2 560.791672 1119.56879 NaN NaN NaN NaN NaN NaN NaN 27.944 1 31.501 31.001 32.001 3.5571 0 0 0 0.40738 1 3670 3670 0.79363 0 1 + 30745 22038 19554 19565 35465 35465 0.013790183958917623 PLFHKCVR 8 Unmodified _PLFHKCVR_ 0 0 0 REV__L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|72|2|anti-sense REV__L1PA17_dup1702|chr6:42324127-42325591:+|2.9182765160475|0.0195352470793004|7.22|151.0|72|2|anti-sense MSMS UPN48_class_I_Rep_2 6 500.2820739746094 2 500.281472 998.548391 NaN NaN NaN NaN NaN NaN NaN 34.208 1 37.869 37.369 38.369 3.6607 0 0 0 0.40746 1 5488 5488 0.69038 0 1 + 30746 29446 19555 19566 35466 35466 0.04905847736108626 PLFHWFSFCT 10 Unmodified _PLFHWFSFCT_ 0 0 0 HAL1_dup20353|chr17:36523213-36524000:+|1.4563226978086712|0.0979703949562531|3.89|151.0|11|2|sense HAL1_dup20353|chr17:36523213-36524000:+|1.4563226978086712|0.0979703949562531|3.89|151.0|11|2|sense HAL1_dup20353|chr17:36523213-36524000:+|1.4563226978086712|0.0979703949562531|3.89|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 642.7964477539062 2 642.797152 1283.57975 0.39051 0.00025102 -1.061 -0.00068201 -0.67049 -0.00043099 642.7963294068977 53.285 0.24086 56.812 56.782 57.023 3.5278 18 16 2 0 0 0 0.56078 1 11944 11944 3.2813 0.28607 1 50889 30747 7859 19556 19567 35467 35467 -0.050696240204615606 PLFHWVLI 8 Unmodified _PLFHWVLI_ 0 0 0 HAL1_dup3954|chr2:233154990-233155340:+|1.328567923349742|0.0063340348603983|7.71|151.0|15|2|anti-sense HAL1_dup3954|chr2:233154990-233155340:+|1.328567923349742|0.0063340348603983|7.71|151.0|15|2|anti-sense HAL1_dup3954|chr2:233154990-233155340:+|1.328567923349742|0.0063340348603983|7.71|151.0|15|2|anti-sense MSMS UPN48_class_I_Rep_1 5 512.8023071289062 2 512.802563 1023.59057 NaN NaN NaN NaN NaN NaN NaN 23.144 1 26.705 26.205 27.205 3.5605 0 0 0 0.40738 1 2367 2367 0.79363 0 1 30748 7880 19557 19568 35468 35468 0.07972146416136638 PLFILWHGW 9 Unmodified _PLFILWHGW_ 0 0 0 REV__L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|65|3|anti-sense REV__L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|65|3|anti-sense MSMS UPN48_class_I_Rep_3 7 585.2369995117188 2 584.818744 1167.62294 NaN NaN NaN NaN NaN NaN NaN 22.804 1 26.554 26.054 27.054 3.7507 0 0 0 0.40038 1 2388 2388 0.6015 0.14316 1 + 30749 24320 19558 19569 35469 35469 0.045829338191197166 PLFKFSLISLS 11 Unmodified _PLFKFSLISLS_ 0 0 0 L1MD2_dup7560|chr11:20500112-20500808:+|1.3865848408660189|0.1733479391393549|3.0|150.0|35|1|anti-sense L1MD2_dup7560|chr11:20500112-20500808:+|1.3865848408660189|0.1733479391393549|3.0|150.0|35|1|anti-sense L1MD2_dup7560|chr11:20500112-20500808:+|1.3865848408660189|0.1733479391393549|3.0|150.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3883056640625 2 626.371007 1250.72746 NaN NaN NaN NaN NaN NaN NaN 105.44 1 109.18 108.68 109.68 3.7395 0 0 0 0.38417 1 25878 25878 3.2813 0.28607 1 30750 12033 19559 19570 35470 35470 0.1121259078518051 PLFKVFKP 8 Unmodified _PLFKVFKP_ 0 0 0 Tigger11a_dup403|chr22:40058013-40058671:+|2.4243312470819403|0.0108079227283142|7.81|151.0|32|2|anti-sense Tigger11a_dup403|chr22:40058013-40058671:+|2.4243312470819403|0.0108079227283142|7.81|151.0|32|2|anti-sense Tigger11a_dup403|chr22:40058013-40058671:+|2.4243312470819403|0.0108079227283142|7.81|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_2 6 488.3065490722656 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 63.15 1 66.624 66.124 67.124 3.4738 0 0 0 0.40625 1 14175 14175 2.3027 0 1 30751 33224 19560 19571 35471 35471 0.10701030558891489 PLFKVFKP 8 Unmodified _PLFKVFKP_ 0 0 0 Tigger11a_dup403|chr22:40058013-40058671:+|2.4243312470819403|0.0108079227283142|7.81|151.0|32|2|anti-sense Tigger11a_dup403|chr22:40058013-40058671:+|2.4243312470819403|0.0108079227283142|7.81|151.0|32|2|anti-sense Tigger11a_dup403|chr22:40058013-40058671:+|2.4243312470819403|0.0108079227283142|7.81|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_3 7 488.30596923828125 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 61.09 1 64.603 64.103 65.103 3.5129 0 0 0 0.40404 1 13472 13472 5.2307 0 1 30752 33224 19560 19571 35472 35472 0.10701030558891489 PLFLIKCP 8 Unmodified _PLFLIKCP_ 0 0 0 L1PA4_dup8823|chr11:35754505-35760643:-|1.730681588631465|0.1161966468524292|3.9|150.0|344|3|anti-sense;L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|322|3|anti-sense L1PA4_dup8823|chr11:35754505-35760643:-|1.730681588631465|0.1161966468524292|3.9|150.0|344|3|anti-sense L1PA4_dup8823|chr11:35754505-35760643:-|1.730681588631465|0.1161966468524292|3.9|150.0|344|3|anti-sense MSMS UPN46_class_I_Rep_3 1 465.777587890625 2 465.777699 929.540846 NaN NaN NaN NaN NaN NaN NaN 89.552 1 89.552 89.052 90.052 0 0 0 0 0.40738 1 21547 21547 0.79363 0 1 30753 14319 19561 19572 35473 35473 0.07325695415806877 PLFLKLFF 8 Unmodified _PLFLKLFF_ 0 0 0 REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|82|3|anti-sense REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|82|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 512.3131713867188 2 512.815139 1023.61573 0.3424 0.00017559 0.060699 3.1127E-05 0.4031 0.00020671 512.8150320750958 51.789 0.16148 55.428 55.314 55.476 3.639 29 18 2 0 0 0 0.72333 1 10680 10680 2.5775 0 1 257900 + 30754 24458 19562 19573 35474 35474 0.10486201218714086 PLFLLLLLLLL 11 Unmodified _PLFLLLLLLLL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MSMS UPN47_class_I_Rep_3 4 640.9515991210938 2 640.951436 1279.88832 NaN NaN NaN NaN NaN NaN NaN 28.647 1 31.98 31.48 32.48 3.3337 0 0 0 0.38417 1 4522 4522 0 0 1 30755 991 19563 19574 35475 35475 0.25956965169234536 PLFLLLLLLLL 11 Unmodified _PLFLLLLLLLL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MSMS UPN48_class_I_Rep_3 7 641.2840576171875 2 640.951436 1279.88832 NaN NaN NaN NaN NaN NaN NaN 28.074 1 31.816 31.316 32.316 3.7424 0 0 0 0.38417 1 3770 3770 0 0 1 30756 991 19563 19574 35476 35476 0.25956965169234536 PLFLLLLLLLL 11 Unmodified _PLFLLLLLLLL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MSMS UPN48_class_I_Rep_3 7 640.6175537109375 2 640.951436 1279.88832 NaN NaN NaN NaN NaN NaN NaN 28.087 1 31.829 31.329 32.329 3.7424 0 0 0 0.38417 1 3774 3774 0 0 1 30757 991 19563 19574 35477 35477 0.25956965169234536 PLFLRIFILLL 11 Unmodified _PLFLRIFILLL_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|243|2|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|243|2|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|243|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.3047790527344 3 453.303848 1356.88972 NaN NaN NaN NaN NaN NaN NaN 119.78 1 123.26 122.76 123.76 3.4793 0 0 0 0.38417 1 29352 29352 0.50596 0.41111 1 30758 10704 19564 19575 35478 35478 0.22554599258000962 PLFLRIFILLL 11 Unmodified _PLFLRIFILLL_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|243|2|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|243|2|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|243|2|anti-sense MSMS UPN48_class_I_Rep_2 6 453.3056945800781 3 453.303848 1356.88972 NaN NaN NaN NaN NaN NaN NaN 114.3 1 117.97 117.47 118.47 3.663 0 0 0 0.38417 1 27316 27316 0.50596 0.41111 1 30759 10704 19564 19575 35479 35479 0.22554599258000962 PLFLSNKS 8 Unmodified _PLFLSNKS_ 0 0 0 REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|261|2|anti-sense REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|261|2|anti-sense MSMS UPN48_class_I_Rep_3 7 453.30609130859375 2 453.258185 904.501818 NaN NaN NaN NaN NaN NaN NaN 119.11 1 122.7 122.2 123.2 3.5847 0 0 0 0.40738 1 28314 28314 0.79363 0 1 + 30760 29686 19565 19576 35480 35480 0.04574686385808491 PLFMLPLL 8 Unmodified _PLFMLPLL_ 0 0 0 REV__ENST00000508517.1_1_5:114938797-114955882:+|nuORF REV__ENST00000508517.1_1_5:114938797-114955882:+|nuORF MSMS UPN47_class_I_Rep_2 3 472.2878112792969 2 472.2879 942.561247 NaN NaN NaN NaN NaN NaN NaN 90.158 1 93.615 93.115 94.115 3.4571 0 0 0 0.40738 1 22377 22377 0.79363 0 1 + 30761 22725 19566 19577 35481 35481 0.0876686607564352 PLFPHPRK 8 Unmodified _PLFPHPRK_ 0 0 0 REV__LTR7_dup1145|chr7:101935024-101935434:+|1.8068007334320408|0.1098353548996188|4.04|151.0|10|2|sense REV__LTR7_dup1145|chr7:101935024-101935434:+|1.8068007334320408|0.1098353548996188|4.04|151.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2951354980469 2 496.295436 990.57632 0.15185 7.5362E-05 0.35164 0.00017452 0.50349 0.00024988 496.2955247673336 34.787 0.075798 34.787 34.73 34.805 0 8 5 3 0 0 0 0.82752 1 6257 6257 0.79363 0 1 148440 + 30762 30996 19567 19578 35482 35482 0.08065493987851369 PLFRHFRRI 9 Unmodified _PLFRHFRRI_ 0 0 0 ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF ENST00000545893.5_1_17:38345052-38350037:+|nuORF MSMS UPN46_class_I_Rep_3 1 621.372802734375 2 621.372541 1240.73053 NaN NaN NaN NaN NaN NaN NaN 95.322 1 95.322 94.822 95.822 0 0 0 0 0.4007 1 23138 23138 0.52476 0 1 30763 1860 19568 19579 35483 35483 0.11979323473201475 PLFRRRFW 8 Unmodified _PLFRRRFW_ 0 0 0 REV__nc|ENSG00000164088|Q96MI6-2|PPM1M REV__nc|ENSG00000164088|Q96MI6-2|PPM1M MSMS UPN47_class_I_Rep_1 2 589.34228515625 2 589.34071 1176.66687 NaN NaN NaN NaN NaN NaN NaN 84.499 1 88.064 87.564 88.564 3.5655 0 0 0 0.40738 1 21141 21141 0.79363 0 1 + 30764 20033 19569 19580 35484 35484 0.08559963036100271 PLFTYVYFCS 10 Unmodified _PLFTYVYFCS_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|61|1|anti-sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|61|1|anti-sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|61|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 620.7967529296875 2 620.291368 1238.56818 0.50533 0.00031345 0.97407 0.00060421 1.4794 0.00091766 620.7956763081118 51.518 0.4549 54.856 54.685 55.14 3.3386 22 21 2 0 0 0 0.56309 1 11465 11465 1.6526 0 1 97087 30765 16554 19570 19581 35485 35485 -0.04155865834445649 PLFVLWAI 8 Unmodified _PLFVLWAI_ 0 0 0 REV__chr11:60066848-60066951|33|45.88|0.01|12.9|+|0|TE_info:L2a,L2a_dup113646,L2,LINE,donor,+,60065420,60066848|None,MS4A3|6 REV__chr11:60066848-60066951|33|45.88|0.01|12.9|+|0|TE_info:L2a,L2a_dup113646,L2,LINE,donor,+,60065420,60066848|None,MS4A3|6 MSMS UPN47_class_I_Rep_3 4 479.7915954589844 2 479.791664 957.568775 NaN NaN NaN NaN NaN NaN NaN 31.41 1 34.71 34.21 35.21 3.2991 0 0 0 0.40738 1 5349 5349 0.79363 0 1 + 30766 17427 19571 19582 35486 35486 0.08829341667546942 PLGAGAGG 8 Unmodified _PLGAGAGG_ 0 0 0 REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 599.3168334960938 1 599.314751 598.307475 0.2967 0.00017782 2.6563 0.0015919 2.953 0.0017698 599.3163044820259 51.519 0.18293 55.112 55.028 55.21 3.5932 11 9 2 0 0 0 0.82752 1 11391 11391 0 0 1 59136 + 30767 23063 19572 19583 35487 35487 -0.007746449794581167 PLGKLLLLLA 10 Unmodified _PLGKLLLLLA_ 0 0 0 REV__L1MDa_dup4619|chr10:52713204-52714627:-|2.68226169378925|0.0069487129538904|8.59|146.0|69|2|anti-sense REV__L1MDa_dup4619|chr10:52713204-52714627:-|2.68226169378925|0.0069487129538904|8.59|146.0|69|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.3390502929688 2 525.867903 1049.72125 NaN NaN NaN NaN NaN NaN NaN 114.44 1 118.09 117.59 118.59 3.6511 0 0 0 0.53105 1 27208 27208 0 0 1 + 30768 27529 19573 19584 35488 35488 0.19838117344352213 PLGLKELAEKR 11 Unmodified _PLGLKELAEKR_ 0 0 0 REV__nc|ENSG00000182795|Q9BW04-2|SARG REV__nc|ENSG00000182795|Q9BW04-2|SARG MULTI-MSMS UPN47_class_I_Rep_1 2 627.3822021484375 2 627.382437 1252.75032 0.55788 0.00035 -0.040792 -2.5592E-05 0.51708 0.00032441 627.3823901008832 105.32 0.37713 109.06 108.97 109.35 3.7395 100 58 3 0 0 0 0.57992 1 25865 25865 5.7319 0 1 1737600 + 30769 20767 19574 19585 35489 35489 0.13405609902633842 PLGLKELAEKR 11 Unmodified _PLGLKELAEKR_ 0 0 0 REV__nc|ENSG00000182795|Q9BW04-2|SARG REV__nc|ENSG00000182795|Q9BW04-2|SARG MULTI-MSMS UPN47_class_I_Rep_3 4 627.3811645507812 2 627.382437 1252.75032 0.51259 0.00032159 -0.017463 -1.0956E-05 0.49513 0.00031064 627.3825715440909 103.83 0.61166 107.35 107.01 107.62 3.5205 169 92 3 0 0 0 0.57992 1 25401 25401 5.7319 0 1 47057000 + 30770 20767 19574 19585 35490 35490 0.13405609902633842 PLGLKELAEKR 11 Unmodified _PLGLKELAEKR_ 0 0 0 REV__nc|ENSG00000182795|Q9BW04-2|SARG REV__nc|ENSG00000182795|Q9BW04-2|SARG MULTI-MSMS UPN47_class_I_Rep_3 4 627.3834228515625 2 627.382437 1252.75032 0.51264 0.00032162 -0.12438 -7.8031E-05 0.38826 0.00024359 627.3824906753117 104.93 0.48431 108.46 108.38 108.86 3.5308 171 76 3 0 0 0 0.57992 1 25706 25706 5.7319 0 1 24231000 + 30771 20767 19574 19585 35491 35491 0.13405609902633842 PLGLKELAEKR 11 Unmodified _PLGLKELAEKR_ 0 0 0 REV__nc|ENSG00000182795|Q9BW04-2|SARG REV__nc|ENSG00000182795|Q9BW04-2|SARG MULTI-MSMS UPN48_class_I_Rep_1 5 627.3839111328125 2 627.382437 1252.75032 0.42851 0.00026884 -0.037812 -2.3723E-05 0.3907 0.00024512 627.883971009003 103.5 0.30306 107.12 106.85 107.15 3.6209 108 43 3 0 0 0 0.57992 1 24955 24955 5.7319 0 1 47965000 + 30772 20767 19574 19585 35492 35492 0.13405609902633842 PLGLKLSFHLS 11 Unmodified _PLGLKLSFHLS_ 0 0 0 AluJo_dup13588|chr3:50022817-50023108:+|1.6202084679598658|0.013332621558704|6.93|150.0|18|2|anti-sense AluJo_dup13588|chr3:50022817-50023108:+|1.6202084679598658|0.013332621558704|6.93|150.0|18|2|anti-sense AluJo_dup13588|chr3:50022817-50023108:+|1.6202084679598658|0.013332621558704|6.93|150.0|18|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3613891601562 2 606.360973 1210.70739 0.35376 0.00021451 0.18452 0.00011188 0.53828 0.00032639 606.3609999437775 30.393 0.038651 30.393 30.36 30.398 0 4 2 2 0 0 0 0.68244 1 4944 4944 0.30703 0 1 100300 30773 88 19575 19586 35493 35493 0.11046839845243994 PLGLTVILRCL 11 Unmodified _PLGLTVILRCL_ 0 0 0 L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_2 3 599.3722534179688 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 92.604 1 96.07 95.57 96.57 3.4652 0 0 0 0.38417 1 22885 22885 2.9952 1.5133 1 30774 12900 19576 19587 35494 35494 0.14100357007259845 PLGLTVILRCL 11 Unmodified _PLGLTVILRCL_ 0 0 0 L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_2 3 599.373779296875 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 92.745 1 96.21 95.71 96.71 3.4652 0 0 0 0.38417 1 22913 22913 2.9952 1.5133 1 30775 12900 19576 19587 35495 35495 0.14100357007259845 PLGLTVILRCL 11 Unmodified _PLGLTVILRCL_ 0 0 0 L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense L1ME4b_dup1755|chr2:31995466-31995978:+|1.7643952968867098|0.0090196513518805|7.61|151.0|35|3|anti-sense MSMS UPN48_class_I_Rep_2 6 599.37353515625 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 92.31 1 96.073 95.573 96.573 3.7629 0 0 0 0.38417 1 21971 21971 2.9952 1.5133 1 30776 12900 19576 19587 35496 35496 0.14100357007259845 PLGLWRRFE 9 Unmodified _PLGLWRRFE_ 0 0 0 REV__nc|ENSG00000162129|Q9H078-4|CLPB REV__nc|ENSG00000162129|Q9H078-4|CLPB MSMS UPN47_class_I_Rep_2 3 587.7836303710938 2 587.330008 1172.64546 NaN NaN NaN NaN NaN NaN NaN 35.356 1 38.781 38.281 39.281 3.4253 0 0 0 0.40038 1 6508 6508 0.6015 0 1 + 30777 32031 19577 19588 35497 35497 0.06604533216750497 PLGPGWEK 8 Unmodified _PLGPGWEK_ 0 0 0 REV__ENSG00000162490|ENST00000294485|DRAXIN REV__ENSG00000162490|ENST00000294485|DRAXIN MSMS UPN48_class_I_Rep_2 6 442.2382507324219 2 442.237253 882.459953 NaN NaN NaN NaN NaN NaN NaN 47.372 1 51.108 50.608 51.608 3.7361 0 0 0 0.40364 1 9350 9350 5.7604 1.0044 1 + 30778 19925 19578 19589 35498 35498 0.0140213069728361 PLGSYAVEDV 10 Unmodified _PLGSYAVEDV_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS UPN47_class_I_Rep_3 4 525.2608032226562 2 525.261122 1048.50769 NaN NaN NaN NaN NaN NaN NaN 35.154 1 38.418 37.918 38.918 3.2639 0 0 0 0.53105 1 6477 6477 1.4819 0 1 + 30779 21388 19579 19590 35499 35499 -0.014622598931964603 PLGVTLSCLLK 11 Unmodified _PLGVTLSCLLK_ 0 0 0 L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|115|2|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|115|2|anti-sense L1PA15_dup3449|chr7:37811231-37813421:+|5.362551353202464|0.1491900013092559|5.17|151.0|115|2|anti-sense MSMS UPN48_class_I_Rep_3 7 572.345703125 2 572.343935 1142.67332 NaN NaN NaN NaN NaN NaN NaN 68.088 1 71.596 71.096 72.096 3.5077 0 0 0 0.38417 1 15591 15591 2.4985 0.65425 1 30780 13926 19580 19591 35500 35500 0.1076867536194186 PLHGHKLL 8 Unmodified _PLHGHKLL_ 0 0 0 REV__ENST00000335997.11_1_X:129199166-129199613:-|nuORF REV__ENST00000335997.11_1_X:129199166-129199613:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 457.29510498046875 2 457.782162 913.549771 0.13632 6.2406E-05 -0.15411 -7.0547E-05 -0.017782 -8.1405E-06 457.7816124748502 57.379 0.68702 60.874 60.45 61.137 3.4942 141 59 4 0 0 0 0.72333 1 12389 12389 13.508 0.97634 1 204660 + 30781 21794 19581 19592 35501 35501 0.08953805096518863 PLHKQLNKA 9 Unmodified _PLHKQLNKA_ 0 0 0 REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1 REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1 MULTI-MSMS UPN47_class_I_Rep_1 2 524.8175048828125 2 524.816733 1047.61891 -0.081444 -4.2743E-05 0.20866 0.00010951 0.12722 6.6765E-05 524.8168471907865 41.012 0.44275 44.684 44.518 44.961 3.6719 47 36 2 0 0 0 0.48846 1 8169 8169 1.8442 0 1 72770 + 30782 18339 19582 19593 35502 35502 0.0970084432542535 PLHLENYQD 9 Unmodified _PLHLENYQD_ 0 0 0 REV__ENST00000526423.1_1_11:46700589-46702208:-|nuORF REV__ENST00000526423.1_1_11:46700589-46702208:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.770751953125 2 564.769645 1127.52474 NaN NaN NaN NaN NaN NaN NaN 48.785 1 52.308 51.808 52.808 3.5239 0 0 0 0.38784 1 9789 9789 3.5965 0.31518 1 + 30783 20547 19583 19594 35503 35503 -0.03392339287370305 PLHLIVFI 8 Unmodified _PLHLIVFI_ 0 0 0 REV__MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|9|1|sense REV__MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 476.743896484375 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 66.341 1 69.527 69.027 70.027 3.1853 0 0 0 0.40581 1 15994 15994 2.8892 0 1 + 30784 31333 19584 19595 35504 35504 0.11805030558900853 PLHNFRKAT 9 Unmodified _PLHNFRKAT_ 0 0 0 REV__HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|67|3|sense REV__HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|67|3|sense MSMS UPN46_class_I_Rep_3 1 542.307373046875 2 542.306532 1082.59851 NaN NaN NaN NaN NaN NaN NaN 81.149 1 81.149 80.649 81.649 0 0 0 0 0.39598 1 19150 19150 1.6526 0.85899 1 + 30785 23807 19585 19596 35505 35505 0.06051673665592716 PLHPLHPY 8 Unmodified _PLHPLHPY_ 0 0 0 REV__L1ME2z_dup1483|chr3:190637357-190638863:-|2.6338276375179097|0.1458017051645969|4.18|151.0|74|2|anti-sense REV__L1ME2z_dup1483|chr3:190637357-190638863:-|2.6338276375179097|0.1458017051645969|4.18|151.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.26593017578125 2 487.266345 972.518136 -0.21101 -0.00010282 0.45791 0.00022312 0.2469 0.00012031 487.26640234371143 42.45 1.6287 46.129 45.793 47.422 3.6792 175 105 3 0 0 0 0.82752 1 8854 8854 0.79363 0 1 142590 + 30786 27903 19586 19597 35506 35506 0.03077812342553443 PLHPLHPY 8 Unmodified _PLHPLHPY_ 0 0 0 REV__L1ME2z_dup1483|chr3:190637357-190638863:-|2.6338276375179097|0.1458017051645969|4.18|151.0|74|2|anti-sense REV__L1ME2z_dup1483|chr3:190637357-190638863:-|2.6338276375179097|0.1458017051645969|4.18|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_2 3 487.26708984375 2 487.266345 972.518136 NaN NaN NaN NaN NaN NaN NaN 44.22 1 47.576 47.076 48.076 3.3556 0 0 0 0.40738 1 9200 9200 0.79363 0 1 + 30787 27903 19586 19597 35507 35507 0.03077812342553443 PLHPPGCFITY 11 Unmodified _PLHPPGCFITY_ 0 0 0 L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|20|1|anti-sense L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|20|1|anti-sense L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 622.8120727539062 2 622.810259 1243.60597 0.4338 0.00027018 1.3078 0.00081453 1.7416 0.0010847 622.8112237777898 48.928 0.65499 52.162 51.854 52.509 3.2345 88 38 3 0 0 0 0.30752 1 10672 10672 24.021 0.23079 1 141670 30788 9243 19587 19598 35508 35508 -0.00609354848984367 PLHPPGCFITY 11 Unmodified _PLHPPGCFITY_ 0 0 0 L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|20|1|anti-sense L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|20|1|anti-sense L1M8_dup1529|chr17:82420918-82421543:+|1.208675101078923|0.2951655860501421|2.03|151.0|20|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 622.810259 1243.60597 0.38104 0.00023732 1.237 0.00077041 1.618 0.0010077 622.8113959789475 48.793 0.74313 52.139 51.815 52.558 3.3465 -0.0074838 -0.00032109 NaN 24.021 78 43 3 NaN NaN NaN NaN 0 NaN NaN 0 152660 30789 9243 19587 19598 -0.00609354848984367 PLHPTPHIVL 10 Unmodified _PLHPTPHIVL_ 0 0 0 ENSG00000186088.16,GSAP,chr7,-,I27.1,77321404,77323646|28|6.54|1|intron ENSG00000186088.16,GSAP,chr7,-,I27.1,77321404,77323646|28|6.54|1|intron ENSG00000186088.16,GSAP,chr7,-,I27.1,77321404,77323646|28|6.54|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 562.8370361328125 2 562.334759 1122.65496 0.22897 0.00012876 0.096876 5.4477E-05 0.32585 0.00018324 562.3344749245125 32.046 0.069298 32.046 31.984 32.053 0 11 4 3 0 0 0 0.56033 1 5424 5424 3.5965 0 1 254080 30790 5137 19588 19599 35509 35509 0.09854301502286944 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MSMS UPN47_class_I_Rep_2 3 532.31689453125 2 532.316566 1062.61858 0.4847 0.00025802 0.028769 1.5314E-05 0.51347 0.00027333 532.3163593955599 110.93 0.11917 114.45 114.38 114.5 3.5271 20 12 3 0 0 0 0.46434 1 27013 27013 4.3292 1.7518 1 414470 + 30791 19106 19589 19600 35510 35510 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MSMS UPN48_class_I_Rep_1 5 532.3162841796875 2 532.316566 1062.61858 0.3268 0.00017396 -0.28651 -0.00015251 0.040284 2.1444E-05 532.3163008710866 110.36 0.15518 113.99 113.9 114.06 3.6326 19 15 2 0 0 0 0.40174 1 26799 26799 7.9102 3.9658 1 985720 + 30792 19106 19589 19600 35511 35511 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-SECPEP UPN48_class_I_Rep_2 6 532.9644165039062 2 532.316566 1062.61858 0.4322 0.00023007 0.14875 7.9183E-05 0.58095 0.00030925 532.3165368550242 109.91 0.034935 113.58 113.56 113.6 3.6715 6 2 3 0 0 0 0.12099 1 26167 26167 6.7232 0.51738 1 2632700 + 30793 19106 19589 19600 35512 35512 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MSMS UPN48_class_I_Rep_3 7 532.3167724609375 2 532.316566 1062.61858 0.51474 0.00027401 0.24006 0.00012779 0.7548 0.00040179 532.3164738189611 110.46 0.10094 114.13 114.12 114.22 3.67 18 10 2 0 0 0 0.40174 1 26213 26213 7.9102 5.3327 1 426070 + 30794 19106 19589 19600 35513 35513 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH UPN46_class_I_Rep_3 1 2 532.316566 1062.61858 0.33775 0.00017979 0.277 0.00014745 0.61475 0.00032724 532.3164643112133 113.73 0.047974 113.73 113.7 113.75 0 -0.17685 0.00024517 NaN 6.7232 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 132820 + 30795 19106 19589 19600 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 532.316566 1062.61858 0.4847 0.00025802 0.028769 1.5314E-05 0.51347 0.00027333 532.3163593955599 110.93 0.11917 114.45 114.38 114.5 3.5271 -0.0057897 0.00022877 NaN 4.3292 20 12 3 NaN NaN NaN NaN 0 NaN NaN 0 414470 + 30796 19106 19589 19600 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 532.316566 1062.61858 0.48219 0.00025668 -0.038989 -2.0754E-05 0.4432 0.00023592 532.316285558662 110.58 0.19621 114.11 114.06 114.25 3.5271 0.20034 -9.1241E-05 NaN 6.7232 36 24 2 NaN NaN NaN NaN 0 NaN NaN 0 236140 + 30797 19106 19589 19600 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 532.316566 1062.61858 0.3268 0.00017396 -0.28651 -0.00015251 0.040284 2.1444E-05 532.3163008710866 110.36 0.15518 113.99 113.9 114.06 3.6326 0.085029 -0.00035476 NaN 6.7232 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 985720 + 30798 19106 19589 19600 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 532.316566 1062.61858 0.51347 0.00027333 -1.1685 -0.000622 -0.655 -0.00034867 532.3161050751414 110.8 0.028992 114.46 114.45 114.48 3.6654 0.0057897 -0.0010459 NaN 4.3292 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 138480 + 30799 19106 19589 19600 0.0897742460556401 PLHRTIVDL 9 Unmodified _PLHRTIVDL_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 532.316566 1062.61858 0.51474 0.00027401 0.24006 0.00012779 0.7548 0.00040179 532.3164738189611 110.46 0.10094 114.13 114.12 114.22 3.67 0.22026 0.00020584 NaN 6.7232 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 426070 + 30800 19106 19589 19600 0.0897742460556401 PLHVIPVE 8 Unmodified _PLHVIPVE_ 0 0 0 REV__Tigger17a_dup466|chr3:177142762-177143370:+|1.7047157054249535|0.0145705677009651|6.87|151.0|12|3|sense REV__Tigger17a_dup466|chr3:177142762-177143370:+|1.7047157054249535|0.0145705677009651|6.87|151.0|12|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2685241699219 2 452.268553 902.522553 -0.18948 -8.5697E-05 0.78685 0.00035587 0.59737 0.00027017 452.26899093025014 24.68 0.35544 24.68 24.429 24.784 0 57 36 2 0 0 0 0.82752 1 3277 3277 0.79363 0 1 135510 + 30801 32604 19590 19601 35514 35514 0.06739276765483737 PLHVRNLLS 9 Unmodified _PLHVRNLLS_ 0 0 0 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 MSMS UPN47_class_I_Rep_2 3 524.8172607421875 2 524.816733 1047.61891 NaN NaN NaN NaN NaN NaN NaN 41.52 1 44.886 44.386 45.386 3.3655 0 0 0 0.37891 1 8377 8377 5.7319 0 1 30802 3427 19591 19602 35515 35515 0.0970084432542535 PLHYCFLK 8 Unmodified _PLHYCFLK_ 0 0 0 Tigger9a_dup121|chr2:68190586-68191078:+|1.503042440940924|0.035836016057941|5.39|151.0|24|1|anti-sense Tigger9a_dup121|chr2:68190586-68191078:+|1.503042440940924|0.035836016057941|5.39|151.0|24|1|anti-sense Tigger9a_dup121|chr2:68190586-68191078:+|1.503042440940924|0.035836016057941|5.39|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.7710266113281 2 510.770406 1019.52626 NaN NaN NaN NaN NaN NaN NaN 27.614 1 31.177 30.677 31.677 3.5629 0 0 0 0.40738 1 3583 3583 0.79363 0 1 30803 33461 19592 19603 35516 35516 0.0172762326768634 PLIAALWEA 9 Unmodified _PLIAALWEA_ 0 0 0 AluSc_dup11383|chr5:179997841-179998138:-|1.5213308184720684|0.0270967444630389|5.81|151.0|1|1|sense AluSc_dup11383|chr5:179997841-179998138:-|1.5213308184720684|0.0270967444630389|5.81|151.0|1|1|sense AluSc_dup11383|chr5:179997841-179998138:-|1.5213308184720684|0.0270967444630389|5.81|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 492.2807922363281 2 492.28166 982.548768 0.48159 0.00023708 -2.5641 -0.0012623 -2.0825 -0.0010252 492.28007663298325 107.79 0.051407 111.33 111.29 111.34 3.5345 7 5 2 0 0 0 0.45688 1 26092 26092 4.756 0 1 2253800 30804 201 19593 19604 35517 35517 0.05679545936936847 PLIAVLHF 8 Unmodified _PLIAVLHF_ 0 0 0 REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|198|1|anti-sense REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|198|1|anti-sense MSMS UPN48_class_I_Rep_3 7 455.28314208984375 2 455.281463 908.548374 NaN NaN NaN NaN NaN NaN NaN 40.654 1 44.304 43.804 44.804 3.6509 0 0 0 0.40581 1 7256 7256 2.8892 0 1 + 30805 23604 19594 19605 35518 35518 0.0904417100775845 PLIGPKLKRR 10 Unmodified _PLIGPKLKRR_ 0 0 0 ENSG00000143653|ENST00000366510|SCCPDH ENSG00000143653|ENST00000366510|SCCPDH ENSG00000143653|ENST00000366510|SCCPDH MSMS UPN46_class_I_Rep_3 1 589.3972778320312 2 589.398225 1176.7819 NaN NaN NaN NaN NaN NaN NaN 55.253 1 55.253 54.753 55.753 0 0 0 0 0.53105 1 12007 12007 0.40072 0 1 30806 3316 19595 19606 35519 35519 0.20057647447242744 PLIHLQLRKL 10 Unmodified _PLIHLQLRKL_ 0 0 0 REV__MER67B_dup379|chr14:105920795-105921378:-|1.8568020208885927|0.0899148888999117|4.37|150.0|2|1|sense REV__MER67B_dup379|chr14:105920795-105921378:-|1.8568020208885927|0.0899148888999117|4.37|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 615.906494140625 2 615.905882 1229.79721 NaN NaN NaN NaN NaN NaN NaN 47.749 1 47.749 47.249 48.249 0 0 0 0 0.53105 1 9897 9897 0.45834 0 1 + 30807 31534 19596 19607 35520 35520 0.19150514244461192 PLIIRKQK 8 Unmodified _PLIIRKQK_ 0 0 0 REV__L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense REV__L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 498.34002685546875 2 498.339844 994.665135 0.28811 0.00014358 1.3255 0.00066053 1.6136 0.00080411 498.3406731903278 108.21 0.45667 111.75 111.63 112.09 3.5382 89 48 4 0 0 0 0.82752 1 26505 26505 0.79363 0 1 35544000 + 30808 24761 19597 19608 35521 35521 0.16758909227496588 PLIIRKQK 8 Unmodified _PLIIRKQK_ 0 0 0 REV__L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense REV__L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|59|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 498.339844 994.665135 0.25597 0.00012756 3.6152 0.0018016 3.8712 0.0019292 498.34255982086086 108.06 0.080879 111.74 111.67 111.75 3.6813 -0.0015491 0.0022413 NaN 0.79363 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 10873000 + 30809 24761 19597 19608 0.16758909227496588 PLIKHKQPY 9 Unmodified _PLIKHKQPY_ 0 0 0 REV__LTR85c_dup719|chr10:75441146-75441887:-|1.439697721066485|0.0093459209577916|7.27|147.0|44|3|anti-sense REV__LTR85c_dup719|chr10:75441146-75441887:-|1.439697721066485|0.0093459209577916|7.27|147.0|44|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.334716796875 2 562.334759 1122.65496 0.26208 0.00014738 0.053661 3.0175E-05 0.31574 0.00017755 562.3345070652576 33.554 0.051003 33.554 33.513 33.564 0 5 4 2 0 0 0 0.50088 1 5871 5871 0.52476 0 1 76245 + 30810 31028 19598 19609 35522 35522 0.09854301502286944 PLIKWMVC 8 Unmodified _PLIKWMVC_ 0 0 0 L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense MSMS UPN48_class_I_Rep_1 5 495.29815673828125 2 495.269184 988.523815 NaN NaN NaN NaN NaN NaN NaN 29.348 1 32.897 32.397 33.397 3.5499 0 0 0 0.40738 1 4065 4065 0.79363 0 1 30811 9325 19599 19610 35523 35523 0.029094515383576436 PLILIILIDM 10 Unmodified _PLILIILIDM_ 0 0 0 REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 577.3668212890625 2 577.366878 1152.7192 0.48629 0.00028077 -0.36161 -0.00020878 0.12467 7.1983E-05 577.3665780999869 93.257 0.27166 97.148 96.96 97.231 3.8914 81 35 3 0 0 0 0.56543 1 22097 22097 0 0 1 1634300 + 30812 24946 19600 19611 35524 35524 0.14895320544178503 PLILIILIDM 10 Unmodified _PLILIILIDM_ 0 0 0 REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 577.366878 1152.7192 0.62889 0.0003631 -0.48828 -0.00028192 0.14061 8.1185E-05 577.366520040309 93.646 0.17638 97.115 96.978 97.154 3.4687 -0.062175 -0.00015851 NaN 0 43 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1114500 + 30813 24946 19600 19611 0.14895320544178503 PLILIILIDM 10 Unmodified _PLILIILIDM_ 0 0 0 REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 577.366878 1152.7192 0.40307 0.00023272 -0.24199 -0.00013972 0.16108 9.3E-05 577.3666125904566 93.643 0.71562 97.264 96.888 97.604 3.6208 0.08676 0.00012589 NaN 0 217 83 3 NaN NaN NaN NaN 0 NaN NaN 0 970220 + 30814 24946 19600 19611 0.14895320544178503 PLILIILIDM 10 Unmodified _PLILIILIDM_ 0 0 0 REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|90|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 577.366878 1152.7192 0.47864 0.00027635 -0.37543 -0.00021676 0.10321 5.959E-05 577.3665834424878 93.411 0.49943 97.181 96.921 97.42 3.77 0.003988 -2.8198E-05 NaN 0 145 70 4 NaN NaN NaN NaN 0 NaN NaN 0 1057200 + 30815 24946 19600 19611 0.14895320544178503 PLILIILITV 10 Unmodified _PLILIILITV_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|248|2|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|248|2|anti-sense MSMS UPN46_class_I_Rep_3 1 554.3887329101562 2 554.391211 1106.76787 NaN NaN NaN NaN NaN NaN NaN 53.108 1 53.108 52.608 53.608 0 0 0 0 0.53105 1 11404 11404 0.40072 0 1 + 30816 29332 19601 19612 35525 35525 0.2187555717559917 PLILPWFF 8 Unmodified _PLILPWFF_ 0 0 0 MER21B_dup925|chr6:20468082-20468774:-|1.2943803209871627|0.0161338383368226|6.33|151.0|38|2|anti-sense MER21B_dup925|chr6:20468082-20468774:-|1.2943803209871627|0.0161338383368226|6.33|151.0|38|2|anti-sense MER21B_dup925|chr6:20468082-20468774:-|1.2943803209871627|0.0161338383368226|6.33|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.8143920898438 2 516.799489 1031.58443 NaN NaN NaN NaN NaN NaN NaN 32.097 1 35.566 35.066 36.066 3.4691 0 0 0 0.40738 1 5517 5517 0.79363 0 1 30817 15880 19602 19613 35526 35526 0.06989628184601315 PLILQAHRWKV 11 Unmodified _PLILQAHRWKV_ 0 0 0 THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|10|1|sense THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|10|1|sense THE1B-int_dup170|chr1:116562865-116564445:-|1.3533464754917794|0.0560909888058055|4.59|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 454.2793884277344 3 454.278585 1359.81392 NaN NaN NaN NaN NaN NaN NaN 54.262 1 57.581 57.081 58.081 3.3187 0 0 0 0.38417 1 12253 12253 0.50596 0.34663 1 30818 32894 19603 19614 35527 35527 0.14841015130355117 PLILSLGPP 9 Unmodified _PLILSLGPP_ 0 0 0 ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF MSMS UPN47_class_I_Rep_2 3 453.78424072265625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.352 1 54.691 54.191 55.191 3.3386 0 0 0 0.39326 1 11368 11368 2.3027 0 1 30819 7235 19604 19615 35528 35528 0.1020473394231658 PLILSLGPP 9 Unmodified _PLILSLGPP_ 0 0 0 ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF MSMS UPN47_class_I_Rep_3 4 453.7841491699219 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 50.336 1 53.562 53.062 54.062 3.2262 0 0 0 0.39326 1 11111 11111 2.3027 0 1 30820 7235 19604 19615 35529 35529 0.1020473394231658 PLILSLGPP 9 Unmodified _PLILSLGPP_ 0 0 0 ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF MSMS UPN47_class_I_Rep_3 4 453.78472900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 50.365 1 53.591 53.091 54.091 3.2262 0 0 0 0.39326 1 11120 11120 2.3027 0 1 30821 7235 19604 19615 35530 35530 0.1020473394231658 PLILSLGPP 9 Unmodified _PLILSLGPP_ 0 0 0 ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF MSMS UPN47_class_I_Rep_3 4 453.78436279296875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.384 1 54.6 54.1 55.1 3.2163 0 0 0 0.39326 1 11431 11431 2.3027 0 1 30822 7235 19604 19615 35531 35531 0.1020473394231658 PLILSLGPP 9 Unmodified _PLILSLGPP_ 0 0 0 ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF MSMS UPN47_class_I_Rep_3 4 453.7838439941406 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.42 1 54.636 54.136 55.136 3.2163 0 0 0 0.39326 1 11442 11442 2.3027 0 1 30823 7235 19604 19615 35532 35532 0.1020473394231658 PLILSLGPP 9 Unmodified _PLILSLGPP_ 0 0 0 ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF ENST00000521423.1_1_5:150411806-150411953:-|nuORF MSMS UPN47_class_I_Rep_3 4 453.78472900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.969 1 55.174 54.674 55.674 3.2055 0 0 0 0.39326 1 11610 11610 2.3027 0 1 30824 7235 19604 19615 35533 35533 0.1020473394231658 PLINPNLRG 9 Unmodified _PLINPNLRG_ 0 0 0 REV__L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense REV__L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.2949523925781 2 497.295633 992.576714 -0.15369 -7.6431E-05 0.01861 9.2546E-06 -0.13508 -6.7176E-05 497.2955735550397 36.096 0.68279 39.507 39.164 39.847 3.4114 92 49 2 0 0 0 0.48846 1 6804 6804 1.8442 0 1 176250 + 30825 27458 19605 19616 35534 35534 0.0801286891704649 PLIPMPFV 8 Unmodified _PLIPMPFV_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.2640686035156 2 457.264425 912.514297 0.04888 2.2351E-05 -0.02277 -1.0412E-05 0.02611 1.1939E-05 457.2643021620862 84.278 0.59161 87.875 87.636 88.227 3.5973 129 77 2 0 0 0 0.82752 1 20223 20223 0.79363 0 1 184420 + 30826 31662 19606 19617 35535 35535 0.05454006524496435 PLIPMPFV 8 Unmodified _PLIPMPFV_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 457.264425 912.514297 0.20465 9.3579E-05 -0.35487 -0.00016227 -0.15022 -6.8691E-05 457.26411978819675 87.989 0.15298 87.989 87.907 88.06 0 0.020426 -0.0001317 NaN 0.79363 29 15 2 NaN NaN NaN NaN 0 NaN NaN 0 176010 + 30827 31662 19606 19617 0.05454006524496435 PLIPMPFV 8 Unmodified _PLIPMPFV_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 457.264425 912.514297 0.018832 8.6111E-06 -0.083707 -3.8276E-05 -0.064875 -2.9665E-05 457.2642367727471 84.577 0.25735 88 87.808 88.065 3.4232 0.032109 0.00011628 NaN 0.79363 51 36 2 NaN NaN NaN NaN 0 NaN NaN 0 89566 + 30828 31662 19606 19617 0.05454006524496435 PLIPMPFV 8 Unmodified _PLIPMPFV_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 457.264425 912.514297 -0.12583 -5.7539E-05 0.030456 1.3927E-05 -0.095377 -4.3613E-05 457.2642318082535 84.654 0.17989 88.016 87.964 88.144 3.3615 0.047249 0.00022069 NaN 0.79363 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 99641 + 30829 31662 19606 19617 0.05454006524496435 PLIPMPFV 8 Unmodified _PLIPMPFV_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 457.264425 912.514297 0.16846 7.703E-05 -0.37289 -0.00017051 -0.20444 -9.3481E-05 457.26414431618787 84.214 0.65291 87.908 87.568 88.221 3.6937 -0.060477 -0.00014819 NaN 0.79363 140 81 2 NaN NaN NaN NaN 0 NaN NaN 0 249640 + 30830 31662 19606 19617 0.05454006524496435 PLIPMPFV 8 Unmodified _PLIPMPFV_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 457.264425 912.514297 0.20528 9.3868E-05 -0.35873 -0.00016404 -0.15345 -7.0168E-05 457.2641248890702 84.294 0.79752 88.022 87.492 88.29 3.7281 0.053771 -0.00013524 NaN 0.79363 147 100 2 NaN NaN NaN NaN 0 NaN NaN 0 236590 + 30831 31662 19606 19617 0.05454006524496435 PLITVLPGP 9 Unmodified _PLITVLPGP_ 0 0 0 REV__L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense REV__L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense MSMS UPN47_class_I_Rep_1 2 453.78436279296875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.034 1 54.628 54.128 55.128 3.5932 0 0 0 0.40038 1 11242 11242 0.6015 0 1 + 30832 29132 19607 19618 35536 35536 0.1020473394231658 PLIYLHVRPK 10 Unmodified _PLIYLHVRPK_ 0 0 0 REV__nc|ENSG00000170605|Q8NGE7|OR9K2 REV__nc|ENSG00000170605|Q8NGE7|OR9K2 MSMS UPN47_class_I_Rep_2 3 618.3870849609375 2 618.384783 1234.75501 NaN NaN NaN NaN NaN NaN NaN 88.249 1 91.696 91.196 92.196 3.4471 0 0 0 0.53105 1 21947 21947 0.45834 0.057624 1 + 30833 32055 19608 19619 35537 35537 0.1470253883605892 PLKALKRG 8 Unmodified _PLKALKRG_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-SECPEP UPN48_class_I_Rep_1 5 441.2071228027344 2 441.797812 881.581071 0.050509 2.2315E-05 3.5434 0.0015655 3.5939 0.0015878 441.79925372483575 28.956 0.07769 32.506 32.456 32.534 3.5499 12 8 2 0 0 0 0.72333 1 3941 3941 0.69038 0 1 29659 30834 3073 19609 19620 35538 35538 0.13554378130606892 PLKDIWALL 9 Unmodified _PLKDIWALL_ 0 0 0 L1MD1_dup3963|chrX:73955958-73956288:+|1.1833747475906682|0.1806469373087894|2.71|151.0|18|2|anti-sense L1MD1_dup3963|chrX:73955958-73956288:+|1.1833747475906682|0.1806469373087894|2.71|151.0|18|2|anti-sense L1MD1_dup3963|chrX:73955958-73956288:+|1.1833747475906682|0.1806469373087894|2.71|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_2 3 534.827392578125 2 534.826235 1067.63792 NaN NaN NaN NaN NaN NaN NaN 108.51 1 112.04 111.54 112.54 3.5333 0 0 0 0.39428 1 26328 26328 2.0598 0.21551 1 30835 11943 19610 19621 35539 35539 0.10680380896474162 PLKGQKAQAR 10 Unmodified _PLKGQKAQAR_ 0 0 0 REV__L1MEd_dup13630|chrX:153731180-153732321:-|1.076399524636643|0.1926735299554706|2.48|150.0|63|2|anti-sense REV__L1MEd_dup13630|chrX:153731180-153732321:-|1.076399524636643|0.1926735299554706|2.48|150.0|63|2|anti-sense MSMS UPN46_class_I_Rep_3 1 548.8352661132812 2 548.832914 1095.65128 NaN NaN NaN NaN NaN NaN NaN 28.685 1 28.685 28.185 29.185 0 0 0 0 0.53105 1 4439 4439 3.5965 0.31518 1 + 30836 28520 19611 19622 35540 35540 0.10727631728400411 PLKGQKAQAR 10 Unmodified _PLKGQKAQAR_ 0 0 0 REV__L1MEd_dup13630|chrX:153731180-153732321:-|1.076399524636643|0.1926735299554706|2.48|150.0|63|2|anti-sense REV__L1MEd_dup13630|chrX:153731180-153732321:-|1.076399524636643|0.1926735299554706|2.48|150.0|63|2|anti-sense MSMS UPN48_class_I_Rep_3 7 548.8348999023438 2 548.832914 1095.65128 NaN NaN NaN NaN NaN NaN NaN 109 1 112.68 112.18 113.18 3.6751 0 0 0 0.53105 1 25862 25862 13.042 1.4022 1 + 30837 28520 19611 19622 35541 35541 0.10727631728400411 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8117980957031 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 71.48 1 74.856 74.356 75.356 3.3751 0 0 0 0.40738 1 17431 17431 0.79363 0 1 30838 33024 19612 19623 35542 35542 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81182861328125 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 102.21 1 106 105.5 106.5 3.7888 0 0 0 0.40738 1 25170 25170 0.79363 0 1 30839 33024 19612 19623 35543 35543 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 65.292 1 68.548 68.048 69.048 3.2556 0 0 0 0.40738 1 15613 15613 0.79363 0 1 30840 33024 19612 19623 35544 35544 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8114013671875 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 68.25 1 71.52 71.02 72.02 3.2696 0 0 0 0.40738 1 16506 16506 0.79363 0 1 30841 33024 19612 19623 35545 35545 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8117980957031 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 80.908 1 84.224 83.724 84.724 3.3155 0 0 0 0.40738 1 20240 20240 0.79363 0 1 30842 33024 19612 19623 35546 35546 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.8114318847656 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 113.62 1 117.25 116.75 117.75 3.6314 0 0 0 0.40746 1 27607 27607 0.69038 0 1 30843 33024 19612 19623 35547 35547 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_2 6 485.8121337890625 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 113.42 1 117.09 116.59 117.59 3.663 0 0 0 0.40746 1 27070 27070 0.69038 0 1 30844 33024 19612 19623 35548 35548 0.12634951164693575 PLKHLLLH 8 Unmodified _PLKHLLLH_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_3 7 485.8119201660156 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 112.55 1 116.21 115.71 116.71 3.6614 0 0 0 0.40738 1 26744 26744 0.79363 0 1 30845 33024 19612 19623 35549 35549 0.12634951164693575 PLKIALRK 8 Unmodified _PLKIALRK_ 0 0 0 REV__nc|ENSG00000067057|Q01813-2|PFKP REV__nc|ENSG00000067057|Q01813-2|PFKP MSMS UPN47_class_I_Rep_3 4 469.8306579589844 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 91.189 1 94.59 94.09 95.09 3.401 0 0 0 0.40604 1 22818 22818 2.5775 0 1 + 30846 17773 19613 19624 35550 35550 0.17235524198792973 PLKIVKKPKS 10 Unmodified _PLKIVKKPKS_ 0 0 0 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 nc|ENSG00000082397|Q9Y2J2-2|EPB41L3 MSMS UPN48_class_I_Rep_1 5 569.3892211914062 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 111.04 1 114.67 114.17 115.17 3.6326 0 0 0 0.53105 1 26938 26938 0.40072 0 1 30847 1225 19614 19625 35551 35551 0.2016030712159136 PLKKEDLHRI 10 Unmodified _PLKKEDLHRI_ 0 0 0 nc|ENSG00000109944|Q6NUN7-2|JHY;ENSG00000109944|ENST00000227349|JHY nc|ENSG00000109944|Q6NUN7-2|JHY nc|ENSG00000109944|Q6NUN7-2|JHY MSMS UPN47_class_I_Rep_3 4 624.8738403320312 2 624.874779 1247.73501 NaN NaN NaN NaN NaN NaN NaN 99.024 1 102.46 101.96 102.96 3.4328 0 0 0 0.53105 1 24503 24503 1.4819 0 1 30848 1916 19615 19626 35552 35552 0.1210474310544214 PLKKLIVS 8 Unmodified _PLKKLIVS_ 0 0 0 REV__L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|40|1|sense REV__L1PB3_dup1709|chr8:120786286-120790989:+|3.374092930360504|0.033144376384267|6.67|151.0|40|1|sense MSMS UPN48_class_I_Rep_1 5 449.32696533203125 2 449.310221 896.605889 NaN NaN NaN NaN NaN NaN NaN 108.34 1 111.98 111.48 112.48 3.6313 0 0 0 0.40604 1 26208 26208 2.5775 0 1 + 30849 30550 19616 19627 35553 35553 0.1534501321333437 PLKLFKLANPK 11 Unmodified _PLKLFKLANPK_ 0 0 0 MER74A_dup637|chr7:37215378-37215899:+|2.1017829051487413|0.2100838965541559|3.32|151.0|14|3|sense MER74A_dup637|chr7:37215378-37215899:+|2.1017829051487413|0.2100838965541559|3.32|151.0|14|3|sense MER74A_dup637|chr7:37215378-37215899:+|2.1017829051487413|0.2100838965541559|3.32|151.0|14|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 634.3780517578125 2 634.908091 1267.80163 0.56749 0.0003603 1.1973 0.00076016 1.7648 0.0011205 634.9088403445932 103.56 0.062187 107.34 107.31 107.38 3.7788 11 9 2 0 0 0 22.551 1 25460 25460 1.3295 1.3295 1 11291000 30850 16205 19617 19628 35554 35554 0.17843978667337979 PLKLKKRLSI 10 Unmodified _PLKLKKRLSI_ 0 0 0 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 MSMS UPN48_class_I_Rep_1 5 598.4175415039062 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 69.721 1 73.176 72.676 73.676 3.4548 0 0 0 0.53105 1 16194 16194 0.40072 0 1 + 30851 19484 19618 19629 35555 35555 0.2279968490427109 PLKLKKRLSI 10 Unmodified _PLKLKKRLSI_ 0 0 0 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 MSMS UPN48_class_I_Rep_3 7 598.4170532226562 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 69.368 1 72.881 72.381 73.381 3.5128 0 0 0 0.53105 1 15975 15975 0.40072 0 1 + 30852 19484 19618 19629 35556 35556 0.2279968490427109 PLKPNKIVISH 11 Unmodified _PLKPNKIVISH_ 0 0 0 Charlie7_dup328|chr2:24500550-24501654:+|1.6685355307445713|0.0256983101248241|6.02|151.0|29|2|sense Charlie7_dup328|chr2:24500550-24501654:+|1.6685355307445713|0.0256983101248241|6.02|151.0|29|2|sense Charlie7_dup328|chr2:24500550-24501654:+|1.6685355307445713|0.0256983101248241|6.02|151.0|29|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 623.3876953125 2 623.387522 1244.76049 0.42655 0.00026591 0.34206 0.00021323 0.76861 0.00047914 623.3875957712019 108.68 0.57268 112.31 112.19 112.76 3.6321 164 67 4 0 0 0 0.30462 1 26321 26321 15.248 0.41021 1 22086000 30853 536 19619 19630 35557 35557 0.14790217627887614 PLLAGRMF 8 Unmodified _PLLAGRMF_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000522180.5_1_5:179294327-179298488:-|nuORF;ENST00000520912.1_1_5:179296475-179297369:-|nuORF;ENST00000519757.5_1_5:179294406-179298488:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MSMS UPN47_class_I_Rep_2 3 452.75689697265625 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 17.613 1 21 20.5 21.5 3.387 0 0 0 0.40738 1 1347 1347 0.79363 0 1 30854 5358 19620 19631 35558 35558 0.04443354096190433 PLLALIWRLF 10 Unmodified _PLLALIWRLF_ 0 0 0 REV__AluSx1_dup3175|chr1:44432264-44432569:-|2.6693326308539627|0.0016317048338164|10.68|149.0|17|3|anti-sense REV__AluSx1_dup3175|chr1:44432264-44432569:-|2.6693326308539627|0.0016317048338164|10.68|149.0|17|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 621.3928833007812 2 621.392077 1240.7696 0.66254 0.0004117 0.79073 0.00049136 1.4533 0.00090305 621.3924723298811 101.09 0.040466 101.09 101.08 101.12 0 4 2 2 0 0 0 0.56486 1 24666 24666 0.40072 0.40072 1 809540 + 30855 17174 19621 19632 35559 35559 0.15884610984198844 PLLALNFIILK 11 Unmodified _PLLALNFIILK_ 0 0 0 L1ME4a_dup624|chr1:44528914-44529321:+|6.171535205993292|0.0007451161553502|13.02|150.0|17|1|anti-sense L1ME4a_dup624|chr1:44528914-44529321:+|6.171535205993292|0.0007451161553502|13.02|150.0|17|1|anti-sense L1ME4a_dup624|chr1:44528914-44529321:+|6.171535205993292|0.0007451161553502|13.02|150.0|17|1|anti-sense MSMS UPN48_class_I_Rep_2 6 627.9119262695312 2 627.912842 1253.81113 NaN NaN NaN NaN NaN NaN NaN 57.821 1 61.335 60.835 61.835 3.5142 0 0 0 0.38417 1 12538 12538 0.30703 0 1 30856 12875 19622 19633 35560 35560 0.19437746952871748 PLLALSWLS 9 Unmodified _PLLALSWLS_ 0 0 0 MamGypLTR3a_dup98|chr1:246768730-246769250:-|1.6521778393749078|0.1704710248403259|3.28|149.0|27|2|anti-sense MamGypLTR3a_dup98|chr1:246768730-246769250:-|1.6521778393749078|0.1704710248403259|3.28|149.0|27|2|anti-sense MamGypLTR3a_dup98|chr1:246768730-246769250:-|1.6521778393749078|0.1704710248403259|3.28|149.0|27|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.29571533203125 2 500.29731 998.580068 NaN NaN NaN NaN NaN NaN NaN 74.261 1 77.655 77.155 78.155 3.3937 0 0 0 0.38478 1 18271 18271 4.3292 0 1 30857 15737 19623 19634 35561 35561 0.08072118971040254 PLLATKKAAKK 11 Unmodified _PLLATKKAAKK_ 0 0 0 REV__ENSG00000105996|ENST00000222718|HOXA2 REV__ENSG00000105996|ENST00000222718|HOXA2 MSMS UPN46_class_I_Rep_3 1 584.8912963867188 2 584.892441 1167.77033 NaN NaN NaN NaN NaN NaN NaN 74.323 1 74.323 73.823 74.823 0 0 0 0 0.38417 1 17243 17243 0.30703 0.30703 1 + 30858 18312 19624 19635 35562 35562 0.1931540563323324 PLLFLCVP 8 Unmodified _PLLFLCVP_ 0 0 0 REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|59|2|anti-sense REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|59|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.2637023925781 2 451.264425 900.514297 -0.90743 -0.00040949 -0.21805 -9.8399E-05 -1.1255 -0.00050789 451.2641077615225 26.672 0.74868 30.019 29.757 30.506 3.3478 92 63 2 0 0 0 0.82752 1 3878 3878 0.79363 0 1 79138 + 30859 25162 19625 19636 35563 35563 0.0600600652447838 PLLFYPWCPP 10 Unmodified _PLLFYPWCPP_ 0 0 0 REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|361|3|anti-sense REV__L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|361|3|anti-sense MSMS UPN48_class_I_Rep_1 5 617.2958984375 2 616.81227 1231.60999 NaN NaN NaN NaN NaN NaN NaN 61.325 1 64.793 64.293 65.293 3.4678 0 0 0 0.53105 1 13634 13634 1.8442 0.19162 1 + 30860 29335 19626 19637 35564 35564 0.003447346447273958 PLLGKLEL 8 Unmodified _PLLGKLEL_ 0 0 0 REV__ENSG00000133985|ENST00000256367|TTC9 REV__ENSG00000133985|ENST00000256367|TTC9 MULTI-MSMS UPN48_class_I_Rep_3 7 441.7861328125 2 441.786579 881.558604 0.055594 2.4561E-05 -0.36324 -0.00016048 -0.30765 -0.00013591 441.78625369860833 48.96 0.3318 52.589 52.55 52.882 3.6291 27 24 2 0 0 0 0.82752 1 9809 9809 0.79363 0 1 103370 + 30861 19079 19627 19638 35565 35565 0.11308733942303206 PLLGKLEL 8 Unmodified _PLLGKLEL_ 0 0 0 REV__ENSG00000133985|ENST00000256367|TTC9 REV__ENSG00000133985|ENST00000256367|TTC9 MULTI-MATCH UPN47_class_I_Rep_2 3 2 441.786579 881.558604 -0.29998 -0.00013253 2.6748 0.0011817 2.3748 0.0010492 441.7874340143074 49.519 0.085346 52.862 52.834 52.92 3.3431 0.13635 0.0023488 NaN 0.79363 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 35741 + 30862 19079 19627 19638 0.11308733942303206 PLLGKLEL 8 Unmodified _PLLGKLEL_ 0 0 0 REV__ENSG00000133985|ENST00000256367|TTC9 REV__ENSG00000133985|ENST00000256367|TTC9 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 441.786579 881.558604 0.055594 2.4561E-05 -0.36324 -0.00016048 -0.30765 -0.00013591 441.78625369860833 48.96 0.3318 52.589 52.55 52.882 3.6291 -0.13635 -0.00033556 NaN 0.79363 27 24 2 NaN NaN NaN NaN 0 NaN NaN 0 103370 + 30863 19079 19627 19638 0.11308733942303206 PLLGWAALEIR 11 Unmodified _PLLGWAALEIR_ 0 0 0 ENST00000423403.1_1_1:61127008-61195314:-|nuORF ENST00000423403.1_1_1:61127008-61195314:-|nuORF ENST00000423403.1_1_1:61127008-61195314:-|nuORF MSMS UPN48_class_I_Rep_3 7 619.869140625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 87.808 1 91.618 91.118 92.118 3.8104 0 0 0 0.38417 1 20835 20835 2.9952 1.5133 1 30864 6692 19628 19639 35566 35566 0.10894242219478656 PLLHILKITT 10 Unmodified _PLLHILKITT_ 0 0 0 REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|20|2|anti-sense REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 574.8736572265625 2 574.873717 1147.73288 NaN NaN NaN NaN NaN NaN NaN 81.381 1 81.381 80.881 81.881 0 0 0 0 0.53105 1 19216 19216 0.35063 0 1 + 30865 25601 19629 19640 35567 35567 0.16492314367633298 PLLHLYQP 8 Unmodified _PLLHLYQP_ 0 0 0 REV__HERVH-int_dup5193|chr16:8835359-8837970:-|2.3917983839767136|0.1965399975581428|3.61|151.0|21|1|sense REV__HERVH-int_dup5193|chr16:8835359-8837970:-|2.3917983839767136|0.1965399975581428|3.61|151.0|21|1|sense MSMS UPN47_class_I_Rep_3 4 490.78216552734375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 32.537 1 35.824 35.324 36.324 3.2867 0 0 0 0.40746 1 5690 5690 0.69038 0 1 + 30866 23684 19630 19641 35568 35568 0.05850965656804874 PLLHPHNIPVF 11 Unmodified _PLLHPHNIPVF_ 0 0 0 REV__L1MA1_dup1459|chr6:33262066-33263079:+|1.882841249286089|0.4964778200157228|1.92|151.0|39|1|anti-sense REV__L1MA1_dup1459|chr6:33262066-33263079:+|1.882841249286089|0.4964778200157228|1.92|151.0|39|1|anti-sense MSMS UPN46_class_I_Rep_3 1 642.3668212890625 2 642.36659 1282.71863 NaN NaN NaN NaN NaN NaN NaN 62.068 1 62.068 61.568 62.568 0 0 0 0 0.38417 1 13858 13858 1.3295 0 1 + 30867 24757 19631 19642 35569 35569 0.08857661939327954 PLLHPNYF 8 Unmodified _PLLHPNYF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796.16,KLHL24,chr3,+,I10.1,183665040,183671033|37|8.75|1|intron ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MSMS UPN47_class_I_Rep_2 3 500.76544189453125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 40.094 1 43.466 42.966 43.966 3.3712 0 0 0 0.40738 1 7945 7945 0.79363 0 1 30868 2091 19632 19643 35570 35570 0.018023926226987896 PLLHTFKT 8 Unmodified _PLLHTFKT_ 0 0 0 REV__LTR101_Mam_dup53|chr1:192161357-192162015:-|4.172169443501822|0.1029738914327214|5.34|151.0|24|3|sense REV__LTR101_Mam_dup53|chr1:192161357-192162015:-|4.172169443501822|0.1029738914327214|5.34|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 478.78057861328125 2 478.781828 955.549102 NaN NaN NaN NaN NaN NaN NaN 116.77 1 116.77 116.27 117.27 0 0 0 0 0.40738 1 28917 28917 0.79363 0 1 + 30869 30773 19633 19644 35571 35571 0.06954965656791501 PLLIFHGL 8 Unmodified _PLLIFHGL_ 0 0 0 REV__L1MEf_dup9734|chr15:44581672-44581983:+|1.153159588736294|0.230575269962639|2.32|151.0|20|2|anti-sense REV__L1MEf_dup9734|chr15:44581672-44581983:+|1.153159588736294|0.230575269962639|2.32|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_2 3 455.26934814453125 2 455.281463 908.548374 NaN NaN NaN NaN NaN NaN NaN 25.587 1 29.07 28.57 29.57 3.483 0 0 0 0.40738 1 3575 3575 0.79363 0 1 + 30870 28704 19634 19645 35572 35572 0.09044171007747082 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.8345031738281 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 79.401 1 79.401 78.901 79.901 0 0 0 0 0.4029 1 18649 18649 0 0 1 + 30871 26452 19635 19646 35573 35573 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.4998474121094 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 88.966 1 88.966 88.466 89.466 0 0 0 0 0.4029 1 21388 21388 0 0 1 + 30872 26452 19635 19646 35574 35574 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_1 5 481.8335266113281 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 75.993 1 79.493 78.993 79.993 3.4996 0 0 0 0.4029 1 18035 18035 0 0 1 + 30873 26452 19635 19646 35575 35575 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.3365783691406 2 481.836071 961.65759 0.26821 0.00012924 -0.46171 -0.00022247 -0.19349 -9.3232E-05 481.83413800953593 65.355 0.071487 68.834 68.795 68.867 3.4792 6 4 2 0 0 0 0.12551 1 14852 14852 0 0 1 61845 + 30874 26452 19635 19646 35576 35576 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.83392333984375 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 16.954 1 20.503 20.003 21.003 3.5486 0 0 0 0.4029 1 898 898 0 0 1 + 30875 26452 19635 19646 35577 35577 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.8341369628906 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 20.933 1 24.6 24.1 25.1 3.6667 0 0 0 0.4029 1 1880 1880 0 0 1 + 30876 26452 19635 19646 35578 35578 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.83380126953125 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 21.277 1 24.944 24.444 25.444 3.6667 0 0 0 0.4029 1 1971 1971 0 0 1 + 30877 26452 19635 19646 35579 35579 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.83441162109375 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 73.92 1 77.471 76.971 77.971 3.5505 0 0 0 0.4029 1 17313 17313 0 0 1 + 30878 26452 19635 19646 35580 35580 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.8349304199219 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 111.29 1 114.95 114.45 115.45 3.6654 0 0 0 0.4029 1 26405 26405 0 0 1 + 30879 26452 19635 19646 35581 35581 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.8337707519531 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.08 115.58 116.58 3.6614 0 0 0 0.4029 1 26710 26710 0 0 1 + 30880 26452 19635 19646 35582 35582 0.1752275690720353 PLLIIIALP 9 Unmodified _PLLIIIALP_ 0 0 0 REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense REV__L1MB8_dup9978|chr10:26455723-26456229:+|3.23729003724843|0.0161751704503912|7.64|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 481.83349609375 2 481.836071 961.65759 NaN NaN NaN NaN NaN NaN NaN 112.45 1 116.11 115.61 116.61 3.6614 0 0 0 0.4029 1 26717 26717 0 0 1 + 30881 26452 19635 19646 35583 35583 0.1752275690720353 PLLIKFPIKK 10 Unmodified _PLLIKFPIKK_ 0 0 0 REV__Tigger1_dup8694|chr11:76508171-76508883:-|1.1192499357528591|0.0156031263608244|6.16|151.0|12|2|sense REV__Tigger1_dup8694|chr11:76508171-76508883:-|1.1192499357528591|0.0156031263608244|6.16|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 599.299072265625 2 598.910102 1195.80565 NaN NaN NaN NaN NaN NaN NaN 50.358 1 54.052 53.552 54.552 3.6946 0 0 0 0.53105 1 10273 10273 0 0 1 + 30882 32552 19636 19647 35584 35584 0.21558068161039046 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN46_class_I_Rep_3 1 453.83062744140625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 72.853 1 72.853 72.353 73.353 0 0 0 0 0.40738 1 16861 16861 0.79363 0 1 30883 16591 19637 19648 35585 35585 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 453.7846374511719 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 106.92 1 110.6 110.1 111.1 3.6724 0 0 0 0.40738 1 26201 26201 0.79363 0 1 30884 16591 19637 19648 35586 35586 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 45.603 1 48.956 48.456 49.456 3.3534 0 0 0 0.40738 1 9625 9625 0.79363 0 1 30885 16591 19637 19648 35587 35587 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7843933105469 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.312 1 52.659 52.159 53.159 3.3465 0 0 0 0.40738 1 10740 10740 0.79363 0 1 30886 16591 19637 19648 35588 35588 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78497314453125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.924 1 53.268 52.768 53.768 3.3431 0 0 0 0.40738 1 10929 10929 0.79363 0 1 30887 16591 19637 19648 35589 35589 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7849426269531 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 51.854 1 55.187 54.687 55.687 3.3332 0 0 0 0.40738 1 11522 11522 0.79363 0 1 30888 16591 19637 19648 35590 35590 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7848815917969 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 53.373 1 56.7 56.2 57.2 3.3266 0 0 0 0.40738 1 11980 11980 0.79363 0 1 30889 16591 19637 19648 35591 35591 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7853088378906 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 53.742 1 57.069 56.569 57.569 3.3266 0 0 0 0.40738 1 12094 12094 0.79363 0 1 30890 16591 19637 19648 35592 35592 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7852783203125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 53.899 1 57.218 56.718 57.718 3.3187 0 0 0 0.40604 1 12142 12142 2.5775 1.7838 1 30891 16591 19637 19648 35593 35593 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78460693359375 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.06 1 57.379 56.879 57.879 3.3187 0 0 0 0.40738 1 12191 12191 0.79363 0 1 30892 16591 19637 19648 35594 35594 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78485107421875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.77 1 58.089 57.589 58.589 3.3187 0 0 0 0.40738 1 12409 12409 0.79363 0 1 30893 16591 19637 19648 35595 35595 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7847595214844 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 55.162 1 58.473 57.973 58.973 3.3102 0 0 0 0.40738 1 12528 12528 0.79363 0 1 30894 16591 19637 19648 35596 35596 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78472900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 55.354 1 58.664 58.164 59.164 3.3102 0 0 0 0.40738 1 12587 12587 0.79363 0 1 30895 16591 19637 19648 35597 35597 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78509521484375 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 64.609 1 67.865 67.365 68.365 3.2556 0 0 0 0.40738 1 15404 15404 0.79363 0 1 30896 16591 19637 19648 35598 35598 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7848815917969 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 64.941 1 68.197 67.697 68.697 3.2556 0 0 0 0.40738 1 15504 15504 0.79363 0 1 30897 16591 19637 19648 35599 35599 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.78515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 65.213 1 68.469 67.969 68.969 3.2556 0 0 0 0.40738 1 15588 15588 0.79363 0 1 30898 16591 19637 19648 35600 35600 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7848815917969 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 70.725 1 74.008 73.508 74.508 3.2828 0 0 0 0.40738 1 17249 17249 0.79363 0 1 30899 16591 19637 19648 35601 35601 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 41.379 1 44.616 44.116 45.116 3.2372 0 0 0 0.40738 1 8389 8389 0.79363 0 1 30900 16591 19637 19648 35602 35602 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7846984863281 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 41.703 1 44.94 44.44 45.44 3.2372 0 0 0 0.40738 1 8484 8484 0.79363 0 1 30901 16591 19637 19648 35603 35603 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.78448486328125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 44.102 1 47.346 46.846 47.846 3.2441 0 0 0 0.40738 1 9217 9217 0.79363 0 1 30902 16591 19637 19648 35604 35604 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7845458984375 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 44.375 1 47.619 47.119 48.119 3.2441 0 0 0 0.40738 1 9300 9300 0.79363 0 1 30903 16591 19637 19648 35605 35605 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7847595214844 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 48.53 1 51.764 51.264 52.264 3.2345 0 0 0 0.40738 1 10559 10559 0.79363 0 1 30904 16591 19637 19648 35606 35606 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.78521728515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.372 1 52.607 52.107 53.107 3.2345 0 0 0 0.40738 1 10816 10816 0.79363 0 1 30905 16591 19637 19648 35607 35607 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7847595214844 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.656 1 52.882 52.382 53.382 3.2262 0 0 0 0.40738 1 10902 10902 0.79363 0 1 30906 16591 19637 19648 35608 35608 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7849426269531 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.969 1 53.196 52.696 53.696 3.2262 0 0 0 0.40738 1 10998 10998 0.79363 0 1 30907 16591 19637 19648 35609 35609 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7848205566406 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 50.14 1 53.367 52.867 53.867 3.2262 0 0 0 0.40738 1 11051 11051 0.79363 0 1 30908 16591 19637 19648 35610 35610 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7846374511719 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 53.712 1 56.906 56.406 57.406 3.1948 0 0 0 0.40738 1 12138 12138 0.79363 0 1 30909 16591 19637 19648 35611 35611 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7850341796875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.17 1 57.356 56.856 57.856 3.1856 0 0 0 0.40738 1 12278 12278 0.79363 0 1 30910 16591 19637 19648 35612 35612 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.78533935546875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.292 1 57.478 56.978 57.978 3.1856 0 0 0 0.40738 1 12316 12316 0.79363 0 1 30911 16591 19637 19648 35613 35613 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.78515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.96 1 58.137 57.637 58.637 3.1779 0 0 0 0.40738 1 12521 12521 0.79363 0 1 30912 16591 19637 19648 35614 35614 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7848205566406 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 65.536 1 68.716 68.216 69.216 3.1795 0 0 0 0.40738 1 15746 15746 0.79363 0 1 30913 16591 19637 19648 35615 35615 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_2 6 453.784912109375 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 52.756 1 56.366 55.866 56.866 3.6098 0 0 0 0.40738 1 10991 10991 0.79363 0 1 30914 16591 19637 19648 35616 35616 0.1020473394231658 PLLIKPPE 8 Unmodified _PLLIKPPE_ 0 0 0 MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSTC_dup767|chr3:195540499-195540904:+|1.1888607551595962|0.0138189776628886|6.43|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 453.78485107421875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 73.162 1 76.699 76.199 77.199 3.5373 0 0 0 0.40738 1 17104 17104 0.79363 0 1 30915 16591 19637 19648 35617 35617 0.1020473394231658 PLLIQSFLAK 10 Unmodified _PLLIQSFLAK_ 0 0 0 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 MULTI-MSMS UPN46_class_I_Rep_3 1 565.3819580078125 2 565.352617 1128.69068 0.45637 0.00025801 1.1515 0.000651 1.6079 0.00090901 565.3531437651623 109.14 0.44808 109.14 109 109.44 0 71 32 3 0 0 0 0.52562 2 26736 26736;26821 8.7454 4.4162 1 4575500 + 30916 18351 19638 19649 35618;35619 35618 0.13148338959263128 PLLIQSFLAK 10 Unmodified _PLLIQSFLAK_ 0 0 0 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 MULTI-MSMS UPN47_class_I_Rep_2 3 565.3545532226562 2 565.352617 1128.69068 0.63489 0.00035893 1.4418 0.00081512 2.0767 0.001174 565.8549251643129 109.02 0.079674 112.56 112.5 112.58 3.5333 14 9 2 0 0 0 0.54822 1 26529 26529 5.7319 1.7875 1 1629500 + 30917 18351 19638 19649 35620 35620 0.13148338959263128 PLLIQSFLAK 10 Unmodified _PLLIQSFLAK_ 0 0 0 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS UPN47_class_I_Rep_2 3 565.3464965820312 2 565.352617 1128.69068 NaN NaN NaN NaN NaN NaN NaN 108.67 1 112.2 111.7 112.7 3.5333 0 0 0 0.53105 1 26382 26382 8.7454 0 1 + 30918 18351 19638 19649 35621 35621 0.13148338959263128 PLLIQSFLAK 10 Unmodified _PLLIQSFLAK_ 0 0 0 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS UPN47_class_I_Rep_2 3 565.3529052734375 2 565.352617 1128.69068 NaN NaN NaN NaN NaN NaN NaN 108.96 1 112.5 112 113 3.5333 0 0 0 0.53105 1 26506 26506 5.7319 1.7875 1 + 30919 18351 19638 19649 35622 35622 0.13148338959263128 PLLISNDH 8 Unmodified _PLLISNDH_ 0 0 0 REV__MLT1L_dup652|chr1:184961546-184961926:+|1.0707507691956266|0.0217462537475436|5.62|151.0|3|1|sense REV__MLT1L_dup652|chr1:184961546-184961926:+|1.0707507691956266|0.0217462537475436|5.62|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 454.74462890625 2 454.745442 907.476331 NaN NaN NaN NaN NaN NaN NaN 90.123 1 93.813 93.313 94.313 3.6899 0 0 0 0.40738 1 22524 22524 0.79363 0 1 + 30920 31800 19639 19650 35623 35623 0.01889211863363016 PLLKDLEL 8 Unmodified _PLLKDLEL_ 0 0 0 L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|114|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|114|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|114|2|sense MSMS UPN48_class_I_Rep_2 6 470.787841796875 2 470.789318 939.564084 NaN NaN NaN NaN NaN NaN NaN 106.32 1 110.01 109.51 110.51 3.6834 0 0 0 0.40604 1 25140 25140 2.5775 0 1 30921 14531 19640 19651 35624 35624 0.0918841273412454 PLLKDLEL 8 Unmodified _PLLKDLEL_ 0 0 0 L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|114|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|114|2|sense L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|114|2|sense MSMS UPN48_class_I_Rep_2 6 470.7879638671875 2 470.789318 939.564084 NaN NaN NaN NaN NaN NaN NaN 106.64 1 110.32 109.82 110.82 3.6834 0 0 0 0.40604 1 25204 25204 2.5775 0 1 30922 14531 19640 19651 35625 35625 0.0918841273412454 PLLKEDII 8 Unmodified _PLLKEDII_ 0 0 0 REV__L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|60|1|anti-sense REV__L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 470.78778076171875 2 470.789318 939.564084 NaN NaN NaN NaN NaN NaN NaN 106.62 1 110.31 109.81 110.81 3.6899 0 0 0 0.40364 1 25138 25138 5.7604 0 1 + 30923 26240 19641 19652 35626 35626 0.09188412734147278 PLLKMSIVG 9 Unmodified _PLLKMSIVG_ 0 0 0 REV__L1MB1_dup133|chr1:97530517-97532116:-|3.958064026010928|0.2433950202307937|4.02|151.0|108|3|anti-sense REV__L1MB1_dup133|chr1:97530517-97532116:-|3.958064026010928|0.2433950202307937|4.02|151.0|108|3|anti-sense MSMS UPN47_class_I_Rep_2 3 479.3091125488281 2 479.293714 956.572874 NaN NaN NaN NaN NaN NaN NaN 44.889 1 48.244 47.744 48.744 3.3556 0 0 0 0.39428 1 9406 9406 2.0598 0.21551 1 + 30924 25651 19642 19653 35627 35627 0.09285063098980118 PLLKPLKIIIK 11 Unmodified _PLLKPLKIIIK_ 0 0 0 MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MER57A-int_dup1703|chr19:23112751-23113886:+|1.2895046551218794|0.266030358890427|2.28|147.0|18|1|sense MSMS UPN48_class_I_Rep_2 6 638.4594116210938 2 638.459959 1274.90537 NaN NaN NaN NaN NaN NaN NaN 45.141 1 48.899 48.399 49.399 3.7579 0 0 0 0.38417 1 8682 8682 0 0 1 30925 16117 19643 19654 35628 35628 0.27890885775013885 PLLKTPSL 8 Unmodified _PLLKTPSL_ 0 0 0 REV__nc|ENSG00000143514|Q13625-2|TP53BP2 REV__nc|ENSG00000143514|Q13625-2|TP53BP2 MSMS UPN48_class_I_Rep_3 7 434.77996826171875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 81.804 1 85.489 84.989 85.989 3.685 0 0 0 0.40625 1 19378 19378 2.3027 0 1 + 30926 19453 19644 19655 35629 35629 0.10388447425293634 PLLLILKW 8 Unmodified _PLLLILKW_ 0 0 0 REV__L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|153|3|anti-sense REV__L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|153|3|anti-sense MSMS UPN47_class_I_Rep_2 3 498.28375244140625 2 498.336239 994.657924 NaN NaN NaN NaN NaN NaN NaN 117.22 1 120.71 120.21 121.21 3.4891 0 0 0 0.40798 1 28639 28639 0 0 1 + 30927 26981 19645 19656 35630 35630 0.16038176627068879 PLLLKHST 8 Unmodified _PLLLKHST_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|32|1|sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|32|1|sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|32|1|sense MSMS UPN48_class_I_Rep_2 6 454.3736267089844 2 454.781828 907.549102 NaN NaN NaN NaN NaN NaN NaN 115.73 1 119.39 118.89 119.89 3.6607 0 0 0 0.40738 1 27708 27708 0.79363 0 1 30928 14108 19646 19657 35631 35631 0.09162965656787492 PLLLLHYT 8 Unmodified _PLLLLHYT_ 0 0 0 HERVK9-int_dup184|chr4:153693250-153693918:-|3.234157093820106|0.2035647745033717|3.99|149.0|28|1|anti-sense HERVK9-int_dup184|chr4:153693250-153693918:-|3.234157093820106|0.2035647745033717|3.99|149.0|28|1|anti-sense HERVK9-int_dup184|chr4:153693250-153693918:-|3.234157093820106|0.2035647745033717|3.99|149.0|28|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.28985595703125 2 485.292028 968.569503 NaN NaN NaN NaN NaN NaN NaN 27.731 1 31.23 30.73 31.73 3.4986 0 0 0 0.40746 1 4207 4207 0.69038 0 1 30929 8312 19647 19658 35632 35632 0.08396136316594038 PLLLLLLLRVP 11 Unmodified _PLLLLLLLRVP_ 0 0 0 nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX nc|ENSG00000101955|P78539-4|SRPX nc|ENSG00000101955|P78539-4|SRPX MSMS UPN46_class_I_Rep_3 1 630.4432373046875 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 118.26 1 118.26 117.76 118.76 0 0 0 0 0.38417 1 29347 29347 0 0 1 30930 1595 19648 19659 35633 35633 0.2549831274091048 PLLLLLLLRVP 11 Unmodified _PLLLLLLLRVP_ 0 0 0 nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX nc|ENSG00000101955|P78539-4|SRPX nc|ENSG00000101955|P78539-4|SRPX MSMS UPN48_class_I_Rep_1 5 630.44287109375 2 630.444309 1258.87407 NaN NaN NaN NaN NaN NaN NaN 110.85 1 114.48 113.98 114.98 3.6326 0 0 0 0.38417 1 26896 26896 0 0 1 30931 1595 19648 19659 35634 35634 0.2549831274091048 PLLLQIIT 8 Unmodified _PLLLQIIT_ 0 0 0 L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|122|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|122|3|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|122|3|sense MSMS UPN46_class_I_Rep_3 1 455.77227783203125 2 455.802229 909.589904 NaN NaN NaN NaN NaN NaN NaN 119.12 1 119.12 118.62 119.62 0 0 0 0 0.40738 1 29594 29594 0.79363 0 1 30932 13574 19649 19660 35635 35635 0.1314930697640193 PLLLYAAI 8 Unmodified _PLLLYAAI_ 0 0 0 REV__ENSG00000181778|ENST00000377311|TMEM252 REV__ENSG00000181778|ENST00000377311|TMEM252 MSMS UPN47_class_I_Rep_1 2 437.2746276855469 2 437.275847 872.537141 NaN NaN NaN NaN NaN NaN NaN 98.223 1 102.01 101.51 102.51 3.7861 0 0 0 0.40738 1 24318 24318 0.79363 0 1 + 30933 20738 19650 19661 35636 35636 0.09577348913592232 PLLPIGYKQI 10 Unmodified _PLLPIGYKQI_ 0 0 0 REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|71|2|sense REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|71|2|sense MSMS UPN48_class_I_Rep_2 6 571.2852172851562 2 571.352617 1140.69068 NaN NaN NaN NaN NaN NaN NaN 40.424 1 44.166 43.666 44.666 3.7413 0 0 0 0.53105 1 7274 7274 0.40072 0 1 + 30934 23663 19651 19662 35637 35637 0.12596338959269815 PLLPRCFKK 9 Unmodified _PLLPRCFKK_ 0 0 0 REV__ENSG00000146005|ENST00000274710|PSD2 REV__ENSG00000146005|ENST00000274710|PSD2 MULTI-SECPEP UPN48_class_I_Rep_1 5 551.7761840820312 2 551.333704 1100.65286 0.49378 0.00027224 -0.29326 -0.00016168 0.20052 0.00011055 551.3333720221859 88.284 0.035309 91.907 91.888 91.924 3.6229 6 4 2 0 0 0 0.12462 1 21179 21179 1.8442 0 1 156370 + 30935 19527 19652 19663 35638 35638 0.10655549492798855 PLLQGQKFRL 10 Unmodified _PLLQGQKFRL_ 0 0 0 ENST00000339728.5_1_2:235404101-235404395:-|nuORF ENST00000339728.5_1_2:235404101-235404395:-|nuORF ENST00000339728.5_1_2:235404101-235404395:-|nuORF MSMS UPN48_class_I_Rep_1 5 400.5799865722656 3 400.580152 1198.71863 NaN NaN NaN NaN NaN NaN NaN 104.49 1 108.12 107.62 108.62 3.6247 0 0 0 0.53105 1 25172 25172 8.9762 2.3459 1 30936 6226 19653 19664 35639 35639 0.12721661939372098 PLLRGILIG 9 Unmodified _PLLRGILIG_ 0 0 0 REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF REV__ENST00000573523.5_1_17:4574736-4578861:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.30712890625 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 76.8 1 76.8 76.3 77.3 0 0 0 0 0.39518 1 17935 17935 1.8442 0 1 + 30937 19378 19654 19665 35640 35640 0.1503981796191738 PLLSPLLK 8 Unmodified _PLLSPLLK_ 0 0 0 L1MD2_dup7124|chr10:38019484-38020225:+|1.892949942192858|0.0545987235118711|5.12|151.0|35|1|anti-sense L1MD2_dup7124|chr10:38019484-38020225:+|1.892949942192858|0.0545987235118711|5.12|151.0|35|1|anti-sense L1MD2_dup7124|chr10:38019484-38020225:+|1.892949942192858|0.0545987235118711|5.12|151.0|35|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7992248535156 2 440.796946 879.57934 0.12342 5.4403E-05 2.8811 0.00127 3.0045 0.0013244 440.7990976031053 46.829 0.17489 46.829 46.689 46.864 0 19 14 2 0 0 0 0.82752 1 9637 9637 0.79363 0 1 67300 30938 12025 19655 19666 35641 35641 0.1347332432200119 PLLTSSWDEW 10 Unmodified _PLLTSSWDEW_ 0 0 0 nc|ENSG00000185787|Q9UBU8|MORF4L1 nc|ENSG00000185787|Q9UBU8|MORF4L1 nc|ENSG00000185787|Q9UBU8|MORF4L1 MSMS UPN48_class_I_Rep_3 7 617.2929077148438 2 617.292953 1232.57135 NaN NaN NaN NaN NaN NaN NaN 60.908 1 64.421 63.921 64.921 3.5129 0 0 0 0.53105 1 13417 13417 1.6526 0 1 30939 16778 19656 19667 35642 35642 -0.035628994561193394 PLLVQLRI 8 Unmodified _PLLVQLRI_ 0 0 0 REV__L1ME4a_dup15306|chr7:101961895-101962128:+|1.2411167367909557|0.002103772586001|9.2|151.0|10|1|anti-sense REV__L1ME4a_dup15306|chr7:101961895-101962128:+|1.2411167367909557|0.002103772586001|9.2|151.0|10|1|anti-sense MSMS UPN48_class_I_Rep_3 7 476.3193054199219 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 47.464 1 51.1 50.6 51.6 3.6363 0 0 0 0.40746 1 9316 9316 0.69038 0 1 + 30940 28216 19657 19668 35643 35643 0.15039817961883273 PLLYIRQFW 9 Unmodified _PLLYIRQFW_ 0 0 0 REV__L1P3_dup345|chr2:135515299-135518720:-|1.2176934574362477|0.1207874357665839|3.33|151.0|99|1|anti-sense REV__L1P3_dup345|chr2:135515299-135518720:-|1.2176934574362477|0.1207874357665839|3.33|151.0|99|1|anti-sense MSMS UPN47_class_I_Rep_2 3 618.3485107421875 2 618.350409 1234.68626 NaN NaN NaN NaN NaN NaN NaN 89.267 1 92.719 92.219 93.219 3.4525 0 0 0 0.40038 1 22179 22179 0.6015 0.076735 1 + 30941 28897 19658 19669 35644 35644 0.07830874536352894 PLMLRSLL 8 Unmodified _PLMLRSLL_ 0 0 0 REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|38|1|sense REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|38|1|sense MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 26.765 1 30.264 29.764 30.764 3.4986 0 0 0 0.40738 1 3919 3919 0.79363 0 1 + 30942 23614 19659 19670 35645 35645 0.10008482818830089 PLMLRSLL 8 Unmodified _PLMLRSLL_ 0 0 0 REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|38|1|sense REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|38|1|sense MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 79.815 1 83.181 82.681 83.681 3.3657 0 0 0 0.40581 1 19881 19881 2.8892 0 1 + 30943 23614 19659 19670 35646 35646 0.10008482818830089 PLMLRSLL 8 Unmodified _PLMLRSLL_ 0 0 0 REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|38|1|sense REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|38|1|sense MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 79.808 1 83.103 82.603 83.603 3.295 0 0 0 0.40581 1 19966 19966 2.8892 0 1 + 30944 23614 19659 19670 35647 35647 0.10008482818830089 PLNDLDTLSKI 11 Unmodified _PLNDLDTLSKI_ 0 0 0 L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|82|3|anti-sense L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|82|3|anti-sense L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|82|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 410.2313537597656 3 410.230966 1227.67107 0.094685 3.8843E-05 1.2978 0.00053241 1.3925 0.00057125 410.5659827977786 103.38 0.03746 107.16 107.13 107.17 3.7788 5 3 2 0 0 0 0.64031 1 25420 25420 4.1166 1.6818 1 532950 30945 10961 19660 19671 35648 35648 0.06633918157854168 PLNERDSS 8 Unmodified _PLNERDSS_ 0 0 0 ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;nc|ENSG00000170242|Q96K76-2|USP47 ENSG00000170242|ENST00000527733|USP47 ENSG00000170242|ENST00000527733|USP47 MSMS UPN46_class_I_Rep_3 1 459.22015380859375 2 459.219788 916.425024 NaN NaN NaN NaN NaN NaN NaN 101.73 1 101.73 101.23 102.23 0 0 0 0 0.40738 1 24821 24821 0.79363 0 1 30946 4462 19661 19672 35649 35649 -0.036531569013277476 PLNKLLQAKW 10 Unmodified _PLNKLLQAKW_ 0 0 0 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 ENSG00000187688|ENST00000338560|TRPV2 MSMS UPN46_class_I_Rep_3 1 404.248779296875 3 404.248403 1209.72338 NaN NaN NaN NaN NaN NaN NaN 57.874 1 57.874 57.374 58.374 0 0 0 0 0.53105 1 12707 12707 0.69767 0.07084 1 30947 5201 19662 19673 35650 35650 0.12690546082126275 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 634.878173828125 2 634.377686 1266.74082 0.72494 0.00045988 0.20789 0.00013188 0.93283 0.00059177 634.378526666536 107.51 0.20739 107.51 107.4 107.61 0 44 28 2 0 0 0 0.59712 1 26239 26239 5.2969 2.0156 1 32927000 30948 33051 19663 19674 35651 35651 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3780517578125 2 634.377686 1266.74082 0.63473 0.00040266 -0.81497 -0.000517 -0.18024 -0.00011434 634.3773722444239 103.64 0.29422 107.17 106.9 107.19 3.5244 144 44 4 0 0 0 0.59712 1 25187 25187 5.2969 2.3016 1 95483000 30949 33051 19663 19674 35652 35652 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.8792724609375 2 634.377686 1266.74082 0.63469 0.00040263 -0.12104 -7.6783E-05 0.51365 0.00032585 634.377832046272 103.75 0.43091 107.28 107.18 107.61 3.5289 178 67 4 0 0 0 0.59712 2 25216 25216;25243 5.2969 2.3016 1 144370000 30950 33051 19663 19674 35653;35654 35653 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.8784790039062 2 634.377686 1266.74082 0.63451 0.00040252 0.2794 0.00017725 0.91391 0.00057976 634.3783907240943 104.15 0.42486 107.67 107.61 108.04 3.5289 116 68 2 0 0 0 0.59712 1 25377 25377 5.2969 2.3016 1 57862000 30951 33051 19663 19674 35655 35655 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MSMS UPN47_class_I_Rep_2 3 634.37744140625 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 104.89 1 108.42 107.92 108.92 3.5327 0 0 0 0.38417 1 25462 25462 5.2969 2.0156 1 30952 33051 19663 19674 35656 35656 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MSMS UPN47_class_I_Rep_3 4 634.3772583007812 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 105.43 1 108.96 108.46 109.46 3.5308 0 0 0 0.38417 1 25814 25814 5.2969 2.0156 1 30953 33051 19663 19674 35657 35657 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 634.3773803710938 2 634.377686 1266.74082 0.43219 0.00027417 -0.4697 -0.00029796 -0.037506 -2.3793E-05 634.3774103241661 105.43 0.76817 109.06 109.02 109.79 3.6277 202 101 3 0 0 0 0.59712 3 25395 25395;25422;25453 5.2969 2.3016 1 2173500 30954 33051 19663 19674 35658;35659;35660 35658 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.8777465820312 2 634.377686 1266.74082 0.61934 0.0003929 -0.17303 -0.00010976 0.44632 0.00028313 634.3781052039409 103.81 0.38365 107.56 107.5 107.88 3.7434 99 61 2 0 0 0 0.59712 3 24524 24524;24555;24565 5.2969 2.3016 1 67264000 30955 33051 19663 19674 35661;35662;35663 35661 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 634.377686 1266.74082 0.63462 0.00040259 -0.94444 -0.00059913 -0.30983 -0.00019655 634.377285339387 105.69 0.24568 109.23 109.15 109.39 3.5327 0.19019 -0.00023355 NaN 5.2969 92 36 3 NaN NaN NaN NaN 0 NaN NaN 0 3980100 30956 33051 19663 19674 0.11811841617145546 PLNQSLIQRKA 11 Unmodified _PLNQSLIQRKA_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense;Tigger1_dup8879|chr11:130265477-130266965:+|1.2249980728965502|0.1111969357559351|3.46|151.0|3|1|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|54|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 634.377686 1266.74082 0.6194 0.00039294 -0.80736 -0.00051217 -0.18796 -0.00011924 634.8784286946156 105.13 0.85867 108.83 108.79 109.65 3.702 -0.2082 -5.9625E-05 NaN 5.2969 233 126 2 NaN NaN NaN NaN 0 NaN NaN 0 9333900 30957 33051 19663 19674 0.11811841617145546 PLNRLYLLIN 10 Unmodified _PLNRLYLLIN_ 0 0 0 REV__ERVL-E-int_dup6214|chr12:10981997-10983237:+|1.0264913184086149|0.0345484336750919|4.89|151.0|85|3|anti-sense REV__ERVL-E-int_dup6214|chr12:10981997-10983237:+|1.0264913184086149|0.0345484336750919|4.89|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 614.8741455078125 2 614.874248 1227.73394 0.54079 0.00033252 0.25849 0.00015894 0.79927 0.00049145 614.8743019321124 108.65 0.41454 112.29 112.16 112.58 3.6355 128 43 4 0 0 0 0.48573 1 26808 26808 13.042 1.5478 1 55475000 + 30958 23289 19664 19675 35664 35664 0.12918528736554435 PLNRLYLLIN 10 Unmodified _PLNRLYLLIN_ 0 0 0 REV__ERVL-E-int_dup6214|chr12:10981997-10983237:+|1.0264913184086149|0.0345484336750919|4.89|151.0|85|3|anti-sense REV__ERVL-E-int_dup6214|chr12:10981997-10983237:+|1.0264913184086149|0.0345484336750919|4.89|151.0|85|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 614.874248 1227.73394 0.51092 0.00031415 0.27507 0.00016913 0.78598 0.00048328 614.8744282296208 108.67 0.64187 112.21 112.07 112.72 3.5382 -0.053335 0.00011147 NaN 13.042 193 73 3 NaN NaN NaN NaN 0 NaN NaN 0 65823000 + 30959 23289 19664 19675 0.12918528736554435 PLNRLYLLIN 10 Unmodified _PLNRLYLLIN_ 0 0 0 REV__ERVL-E-int_dup6214|chr12:10981997-10983237:+|1.0264913184086149|0.0345484336750919|4.89|151.0|85|3|anti-sense REV__ERVL-E-int_dup6214|chr12:10981997-10983237:+|1.0264913184086149|0.0345484336750919|4.89|151.0|85|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 614.874248 1227.73394 0.57213 0.00035179 0.23593 0.00014506 0.80806 0.00049685 614.874381383865 108.67 0.59758 112.34 112.17 112.77 3.6751 0.077618 6.3335E-05 NaN 13.042 147 67 3 NaN NaN NaN NaN 0 NaN NaN 0 43859000 + 30960 23289 19664 19675 0.12918528736554435 PLPAKGGLKT 10 Unmodified _PLPAKGGLKT_ 0 0 0 REV__ENST00000586500.1_1_19:13993617-13994323:-|nuORF REV__ENST00000586500.1_1_19:13993617-13994323:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 491.81103515625 2 491.30821 980.601866 0.29765 0.00014624 2.2519 0.0011064 2.5496 0.0012526 491.30919523809524 110.25 0.063896 110.25 110.23 110.29 0 8 4 2 0 0 0 0.56354 1 27154 27154 1.3295 0.5359 1 185740 + 30961 18999 19665 19676 35665 35665 0.11078923719617251 PLPDSAQENLL 11 Unmodified _PLPDSAQENLL_ 0 0 0 L1PB4_dup3323|chr7:156708119-156709896:+|1.3238637429843363|0.0358051600468854|5.21|151.0|64|1|anti-sense L1PB4_dup3323|chr7:156708119-156709896:+|1.3238637429843363|0.0358051600468854|5.21|151.0|64|1|anti-sense L1PB4_dup3323|chr7:156708119-156709896:+|1.3238637429843363|0.0358051600468854|5.21|151.0|64|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 598.8114013671875 2 598.81151 1195.60847 0.46371 0.00027767 -0.27251 -0.00016318 0.1912 0.00011449 598.8114485363848 68.968 0.21713 72.422 72.329 72.546 3.4548 24 17 2 0 0 0 0.37961 1 15968 15968 10.8 0.72558 1 215950 30962 15311 19666 19677 35666 35666 0.01848772089670092 PLPEPPRE 8 Unmodified _PLPEPPRE_ 0 0 0 REV__ENST00000500914.6_1_4:174090049-174090625:-|nuORF REV__ENST00000500914.6_1_4:174090049-174090625:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 467.7531433105469 2 467.753267 933.491981 -0.042053 -1.967E-05 -0.23967 -0.00011211 -0.28173 -0.00013178 467.75312115415284 50.132 1.1954 53.761 53.344 54.539 3.6285 111 59 3 0 0 0 0.82752 1 10985 10985 7.9102 3.1541 1 343400 + 30963 22688 19667 19678 35667 35667 0.022574983804247495 PLPEPPRE 8 Unmodified _PLPEPPRE_ 0 0 0 REV__ENST00000500914.6_1_4:174090049-174090625:-|nuORF REV__ENST00000500914.6_1_4:174090049-174090625:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 467.753267 933.491981 -0.042053 -1.967E-05 -0.23967 -0.00011211 -0.28173 -0.00013178 467.75312115415284 50.132 1.1954 53.761 53.344 54.539 3.6285 -0.035169 0.00013945 NaN 7.9102 111 59 3 NaN NaN NaN NaN 0 NaN NaN 0 343400 + 30964 22688 19667 19678 0.022574983804247495 PLPEPPRE 8 Unmodified _PLPEPPRE_ 0 0 0 REV__ENST00000500914.6_1_4:174090049-174090625:-|nuORF REV__ENST00000500914.6_1_4:174090049-174090625:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 467.753267 933.491981 0.02664 1.2461E-05 -0.44103 -0.00020629 -0.41439 -0.00019383 467.7530233288669 50.566 0.95753 53.792 53.505 54.462 3.2262 -0.0038888 -4.8924E-05 NaN 7.9102 92 49 2 NaN NaN NaN NaN 0 NaN NaN 0 329440 + 30965 22688 19667 19678 0.022574983804247495 PLPEQHTL 8 Unmodified _PLPEQHTL_ 0 0 0 REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF REV__ENST00000514302.5_1_4:8609022-8621341:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 467.75323486328125 2 467.753267 933.491981 0.085837 4.0151E-05 -0.1236 -5.7812E-05 -0.037758 -1.7662E-05 467.7531456540117 50.641 1.0002 54.262 53.844 54.844 3.621 149 64 3 0 0 0 0.82752 1 10367 10367 4.756 0 1 997580 + 30966 22759 19668 19679 35668 35668 0.022574983804247495 PLPEVVHIQL 10 Unmodified _PLPEVVHIQL_ 0 0 0 ENSG00000166856|ENST00000300098|GPR182 ENSG00000166856|ENST00000300098|GPR182 ENSG00000166856|ENST00000300098|GPR182 MULTI-SECPEP UPN47_class_I_Rep_2 3 573.279541015625 2 572.839874 1143.66519 0.42581 0.00024392 -0.11534 -6.607E-05 0.31047 0.00017785 572.8398590430069 71.947 0.65181 75.237 74.963 75.615 3.2899 74 55 2 0 0 0 0.84575 1 17624 17624 16.149 0.90062 1 111410 30967 4269 19669 19680 35669 35669 0.09910864436869815 PLPEVVHIQL 10 Unmodified _PLPEVVHIQL_ 0 0 0 ENSG00000166856|ENST00000300098|GPR182 ENSG00000166856|ENST00000300098|GPR182 ENSG00000166856|ENST00000300098|GPR182 MULTI-SECPEP UPN47_class_I_Rep_3 4 573.2797241210938 2 572.839874 1143.66519 0.45117 0.00025845 -0.058248 -3.3367E-05 0.39292 0.00022508 572.8399072403283 72.16 0.70815 75.378 75.078 75.786 3.2188 72 60 2 0 0 0 0.84575 1 17725 17725 16.149 0.90062 1 106620 30968 4269 19669 19680 35670 35670 0.09910864436869815 PLPGCPVWEV 10 Unmodified _PLPGCPVWEV_ 0 0 0 SVA_A_dup900|chr17:32178200-32179164:+|1.1059262413969897|0.2212201673412328|2.32|151.0|11|2|sense;SVA_A_dup901|chr17:32179166-32180647:+|1.88503774182173|0.2944058822543594|2.68|151.0|24|3|sense;SVA_D_dup277|chr3:46963419-46964951:+|1.1471181773868926|0.1402866394197046|3.03|151.0|18|2|sense;SVA_C_dup58|chr2:135105203-135106773:+|1.299343743152397|0.2901873358493253|2.16|151.0|35|3|sense;SVA_C_dup240|chrX:97274642-97276308:-|2.156874412362902|0.0414959857388576|5.7|151.0|18|2|sense;SVA_C_dup228|chrX:44910504-44912072:-|2.029039867030806|0.0354475131363019|5.84|151.0|19|2|sense;SVA_B_dup686|chr17:39333171-39334488:+|2.141501538391253|0.0480914695827511|5.48|151.0|18|2|sense;SVA_A_dup63|chr1:176057345-176058772:+|1.955996766606945|0.0569419178330965|5.1|151.0|29|3|sense;SVA_C_dup86|chr3:128772722-128774097:+|2.716534358885201|0.2681772795939054|3.34|151.0|2|1|sense;SVA_C_dup303|chr11:68474913-68476459:-|2.438390819152149|0.0724346279721589|5.07|151.0|3|1|sense;SVA_A_dup901|chr17:32179166-32180647:+|1.88503774182173|0.2944058822543594|2.68|151.0|4|1|sense;SVA_C_dup418|chr19:29948558-29949954:-|1.3486246256980303|0.0492109740362889|4.78|151.0|4|1|sense SVA_A_dup900|chr17:32178200-32179164:+|1.1059262413969897|0.2212201673412328|2.32|151.0|11|2|sense SVA_A_dup900|chr17:32178200-32179164:+|1.1059262413969897|0.2212201673412328|2.32|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 548.7789306640625 2 548.778428 1095.5423 NaN NaN NaN NaN NaN NaN NaN 39.527 1 42.906 42.406 43.406 3.3785 0 0 0 0.53105 1 7773 7773 10.074 1.3285 1 30969 32842 19670 19681 35671 35671 -0.0016471528608690278 PLPLFLTF 8 Unmodified _PLPLFLTF_ 0 0 0 REV__L1MC5a_dup5772|chr5:171989195-171989878:+|1.1360223870413992|0.0144067088169823|6.3|151.0|26|1|anti-sense REV__L1MC5a_dup5772|chr5:171989195-171989878:+|1.1360223870413992|0.0144067088169823|6.3|151.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 474.2820739746094 2 474.283672 946.552791 NaN NaN NaN NaN NaN NaN NaN 16.765 1 16.765 16.265 17.265 0 0 0 0 0.40738 1 1213 1213 0.79363 0 1 + 30970 27165 19671 19682 35672 35672 0.07737635430646606 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_1 2 453.78515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 59.682 1 63.08 62.58 63.58 3.3982 0 0 0 0.40738 1 13876 13876 0.79363 0 1 30971 1904 19672 19683 35673 35673 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_1 2 453.7842712402344 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 60.136 1 63.534 63.034 64.034 3.3982 0 0 0 0.40738 1 14016 14016 0.79363 0 1 30972 1904 19672 19683 35674 35674 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_2 3 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 59.967 1 63.24 62.74 63.74 3.2731 0 0 0 0.40738 1 13998 13998 0.79363 0 1 30973 1904 19672 19683 35675 35675 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_2 3 453.7843017578125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 60.139 1 63.412 62.912 63.912 3.2731 0 0 0 0.40738 1 14051 14051 0.79363 0 1 30974 1904 19672 19683 35676 35676 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_2 3 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 60.291 1 63.564 63.064 64.064 3.2731 0 0 0 0.40738 1 14098 14098 0.79363 0 1 30975 1904 19672 19683 35677 35677 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_2 3 453.7850341796875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 60.487 1 63.752 63.252 64.252 3.2654 0 0 0 0.40738 1 14157 14157 0.79363 0 1 30976 1904 19672 19683 35678 35678 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_2 3 453.78472900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 60.813 1 64.078 63.578 64.578 3.2654 0 0 0 0.40738 1 14254 14254 0.79363 0 1 30977 1904 19672 19683 35679 35679 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_3 4 453.7846374511719 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 59.62 1 62.785 62.285 63.285 3.1651 0 0 0 0.40738 1 13942 13942 0.79363 0 1 30978 1904 19672 19683 35680 35680 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_3 4 453.7845764160156 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 59.755 1 62.92 62.42 63.42 3.1651 0 0 0 0.40738 1 13984 13984 0.79363 0 1 30979 1904 19672 19683 35681 35681 0.1020473394231658 PLPLKLPE 8 Unmodified _PLPLKLPE_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron;ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|1|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron ENSG00000109686.19,SH3D19,chr4,-,I18.1,151137863,151139774|39|9.68|2|intron MSMS UPN47_class_I_Rep_3 4 453.7853698730469 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 61.086 1 64.251 63.751 64.751 3.1651 0 0 0 0.40738 1 14386 14386 0.79363 0 1 30980 1904 19672 19683 35682 35682 0.1020473394231658 PLPLYGNSIF 10 Unmodified _PLPLYGNSIF_ 0 0 0 LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|22|3|sense LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|22|3|sense LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|22|3|sense MSMS UPN47_class_I_Rep_3 4 560.8077392578125 2 560.8055 1119.59645 NaN NaN NaN NaN NaN NaN NaN 34.829 1 38.093 37.593 38.593 3.2639 0 0 0 0.53105 1 6379 6379 1.8442 0 1 30981 15579 19673 19684 35683 35683 0.04143200137150416 PLPLYLHPPR 10 Unmodified _PLPLYLHPPR_ 0 0 0 REV__ENST00000485259.1_1_9:35741569-35741881:-|nuORF REV__ENST00000485259.1_1_9:35741569-35741881:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.857666015625 2 601.855858 1201.69716 NaN NaN NaN NaN NaN NaN NaN 99.064 1 99.064 98.564 99.564 0 0 0 0 0.53105 1 24126 24126 1.8442 0.19162 1 + 30982 22599 19674 19685 35684 35684 0.10438276910645072 PLPMRLSR 8 Unmodified _PLPMRLSR_ 0 0 0 REV__MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|9|1|sense REV__MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 485.2370300292969 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 43.938 1 47.633 47.133 48.133 3.6951 0 0 0 0.40738 1 9086 9086 0.79363 0 1 + 30983 31925 19675 19686 35685 35685 0.07341830390532778 PLPNTCGHFW 10 Unmodified _PLPNTCGHFW_ 0 0 0 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MSMS UPN46_class_I_Rep_3 1 586.2709350585938 2 586.271301 1170.52805 NaN NaN NaN NaN NaN NaN NaN 71.513 1 71.513 71.013 72.013 0 0 0 0 0.53105 1 16479 16479 1.8442 0 1 30984 5300 19676 19687 35686 35686 -0.05039367714357468 PLPPPNPK 8 Unmodified _PLPPPNPK_ 0 0 0 Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|104|2|anti-sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|104|2|anti-sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|104|2|anti-sense MSMS UPN46_class_I_Rep_3 1 430.25604248046875 2 430.255446 858.496338 NaN NaN NaN NaN NaN NaN NaN 31.942 1 31.942 31.442 32.442 0 0 0 0 0.40604 1 5402 5402 2.5775 0 1 30985 33277 19677 19688 35687 35687 0.06143007593993843 PLPPRVKR 8 Unmodified _PLPPRVKR_ 0 0 0 AluSq2_dup49701|chr16:69640700-69640997:+|1.4346169547562082|0.0656589868500087|4.45|151.0|19|3|anti-sense AluSq2_dup49701|chr16:69640700-69640997:+|1.4346169547562082|0.0656589868500087|4.45|151.0|19|3|anti-sense AluSq2_dup49701|chr16:69640700-69640997:+|1.4346169547562082|0.0656589868500087|4.45|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_2 3 481.78704833984375 2 481.816536 961.618519 NaN NaN NaN NaN NaN NaN NaN 113.47 1 116.98 116.48 117.48 3.5109 0 0 0 0.40738 1 27600 27600 0.79363 0 1 30986 261 19678 19689 35688 35688 0.13617469396228898 PLPQCFCPIL 10 Unmodified _PLPQCFCPIL_ 0 0 0 REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 565.7910766601562 2 565.790481 1129.56641 0.39735 0.00022481 -1.3982 -0.0007911 -1.0009 -0.00056628 565.7896095790695 58.89 0.47791 62.307 62.163 62.641 3.4171 59 31 2 0 0 0 0.55983 1 13623 13623 3.9444 0.66309 1 171700 + 30987 25746 19679 19690 35689 35689 0.006808018759556944 PLPQCFCPIL 10 Unmodified _PLPQCFCPIL_ 0 0 0 REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 565.790481 1129.56641 0.39735 0.00022481 -1.3982 -0.0007911 -1.0009 -0.00056628 565.7896095790695 58.89 0.47791 62.307 62.163 62.641 3.4171 -0.12387 -0.0001248 NaN 3.9444 59 31 2 NaN NaN NaN NaN 0 NaN NaN 0 171700 + 30988 25746 19679 19690 0.006808018759556944 PLPQCFCPIL 10 Unmodified _PLPQCFCPIL_ 0 0 0 REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 565.790481 1129.56641 0.51346 0.00029051 -1.5436 -0.00087333 -1.0301 -0.00058282 565.7896213262554 59.257 0.51378 62.531 62.231 62.745 3.2731 0.099987 -0.00028925 NaN 3.9444 59 35 2 NaN NaN NaN NaN 0 NaN NaN 0 129710 + 30989 25746 19679 19690 0.006808018759556944 PLPQCFCPIL 10 Unmodified _PLPQCFCPIL_ 0 0 0 REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense REV__L1MB2_dup5376|chr10:74894402-74895350:-|1.5761081657074696|0.008094612000209|7.61|151.0|40|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 565.790481 1129.56641 0.35135 0.00019879 -0.92812 -0.00052512 -0.57678 -0.00032634 565.7897964929172 59.289 0.56934 62.454 62.182 62.751 3.1651 0.023885 0.00040715 NaN 3.9444 75 36 3 NaN NaN NaN NaN 0 NaN NaN 0 94755 + 30990 25746 19679 19690 0.006808018759556944 PLPRLPCVKA 10 Unmodified _PLPRLPCVKA_ 0 0 0 MSTB_dup7549|chr17:19140969-19141347:-|1.4669531193008216|0.124003548811811|3.56|151.0|7|2|sense;MSTB_dup7548|chr17:19033199-19033577:+|1.544479158263611|0.1209205504644319|3.67|151.0|7|2|sense MSTB_dup7549|chr17:19140969-19141347:-|1.4669531193008216|0.124003548811811|3.56|151.0|7|2|sense MSTB_dup7549|chr17:19140969-19141347:-|1.4669531193008216|0.124003548811811|3.56|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 547.3327026367188 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 87.019 1 90.656 90.156 91.156 3.6372 0 0 0 0.53105 1 21739 21739 1.4819 0.79152 1 30991 16572 19680 19691 35690 35690 0.10515245630199388 PLPSPEQQ 8 Unmodified _PLPSPEQQ_ 0 0 0 REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 448.2293701171875 2 448.229625 894.444697 0.01245 5.5803E-06 -2.2252 -0.0009974 -2.2128 -0.00099182 448.2293789670548 109.28 0.40173 112.81 112.69 113.09 3.5307 127 53 4 0 0 0 0.82752 1 26593 26593 2.5775 0.51773 1 3386400 + 30992 17787 19681 19692 35691 35691 -0.006747808905629427 PLPSPEQQ 8 Unmodified _PLPSPEQQ_ 0 0 0 REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 448.229625 894.444697 0.17696 7.9321E-05 -1.4152 -0.00063432 -1.2382 -0.000555 448.22926580485097 109.24 0.59915 112.84 112.68 113.28 3.6046 -0.014928 0.00022055 NaN 2.5775 129 69 3 NaN NaN NaN NaN 0 NaN NaN 0 3082500 + 30993 17787 19681 19692 -0.006747808905629427 PLPSPEQQ 8 Unmodified _PLPSPEQQ_ 0 0 0 REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 448.229625 894.444697 -0.0015987 -7.1657E-07 -1.7102 -0.00076658 -1.7118 -0.0007673 448.22938627080737 109.21 0.31075 112.84 112.74 113.05 3.6321 -0.011937 -4.3968E-05 NaN 2.5775 119 38 4 NaN NaN NaN NaN 0 NaN NaN 0 3253300 + 30994 17787 19681 19692 -0.006747808905629427 PLPSPEQQ 8 Unmodified _PLPSPEQQ_ 0 0 0 REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 448.229625 894.444697 0.14601 6.5447E-05 -1.9211 -0.0008611 -1.7751 -0.00079566 448.22963683077563 109.33 0.32693 113 112.96 113.28 3.6715 0.14797 -0.00023301 NaN 2.5775 57 43 3 NaN NaN NaN NaN 0 NaN NaN 0 1347900 + 30995 17787 19681 19692 -0.006747808905629427 PLPVVGGVL 9 Unmodified _PLPVVGGVL_ 0 0 0 nc|ENSG00000213901|Q6PIS1-2|SLC23A3;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3 nc|ENSG00000213901|Q6PIS1-2|SLC23A3 nc|ENSG00000213901|Q6PIS1-2|SLC23A3 MSMS UPN48_class_I_Rep_1 5 425.77484130859375 2 425.773471 849.53239 NaN NaN NaN NaN NaN NaN NaN 60.516 1 63.99 63.49 64.49 3.4737 0 0 0 0.4029 1 13393 13393 0 0 1 30996 5604 19682 19693 35692 35692 0.10160464770876843 PLQFYECVC 9 Unmodified _PLQFYECVC_ 0 0 0 REV__ENST00000591556.1_1_17:40458135-40460407:+|nuORF REV__ENST00000591556.1_1_17:40458135-40460407:+|nuORF MSMS UPN47_class_I_Rep_3 4 551.258056640625 2 551.240821 1100.46709 NaN NaN NaN NaN NaN NaN NaN 62.95 1 66.12 65.62 66.62 3.1698 0 0 0 0.38478 1 14960 14960 4.3292 2.0265 1 + 30997 23170 19683 19694 35693 35693 -0.07912640808831384 PLQIILEIVID 11 Unmodified _PLQIILEIVID_ 0 0 0 REV__ENSG00000198862|ENST00000361371|LTN1 REV__ENSG00000198862|ENST00000361371|LTN1 MSMS UPN48_class_I_Rep_2 6 633.36962890625 2 633.389396 1264.76424 NaN NaN NaN NaN NaN NaN NaN 86.224 1 89.929 89.429 90.429 3.7058 0 0 0 0.38417 1 20531 20531 2.7352 0 1 + 30998 21158 19684 19695 35694 35694 0.14244842611083186 PLQISIANLR 10 Unmodified _PLQISIANLR_ 0 0 0 REV__L1PA16_dup555|chr1:174410276-174413996:-|1.5759349825259452|0.0222297521376238|6.15|149.0|124|3|sense REV__L1PA16_dup555|chr1:174410276-174413996:-|1.5759349825259452|0.0222297521376238|6.15|149.0|124|3|sense MSMS UPN46_class_I_Rep_3 1 562.8439331054688 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 108.25 1 108.25 107.75 108.75 0 0 0 0 0.53105 1 26459 26459 11.495 0 1 + 30999 29388 19685 19696 35695 35695 0.11445382668375714 PLQLRPGL 8 Unmodified _PLQLRPGL_ 0 0 0 REV__MER21B_dup2556|chr19:52195319-52196142:-|1.5284333028061534|0.1474971037190984|3.37|151.0|37|2|anti-sense REV__MER21B_dup2556|chr19:52195319-52196142:-|1.5284333028061534|0.1474971037190984|3.37|151.0|37|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 447.282470703125 2 447.281995 892.549437 0.17799 7.9614E-05 1.5806 0.00070696 1.7586 0.00078657 447.28269565954 109.94 0.21465 109.94 109.88 110.1 0 24 16 2 0 0 0 0.72333 1 27049 27049 5.7604 0 1 487440 + 31000 31206 19686 19697 35696 35696 0.098863853766602 PLQPKPVV 8 Unmodified _PLQPKPVV_ 0 0 0 ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B ENST00000495579.5_1_6:32088425-32095984:-|nuORF ENST00000495579.5_1_6:32088425-32095984:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 438.7801208496094 2 439.278921 876.543289 0.15694 6.8941E-05 1.8531 0.00081401 2.01 0.00088295 439.28046779440183 107.83 0.11411 111.5 111.46 111.58 3.6724 10 6 2 0 0 0 0.72333 1 26438 26438 9.3474 0.75416 1 1007900 31001 5599 19687 19698 35697 35697 0.10007867145134242 PLQQRTKIRK 10 Unmodified _PLQQRTKIRK_ 0 0 0 REV__MER41-int_dup484|chr5:94042605-94044576:+|2.630078790094668|0.0508766891858844|5.69|151.0|95|1|anti-sense REV__MER41-int_dup484|chr5:94042605-94044576:+|2.630078790094668|0.0508766891858844|5.69|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_1 2 634.3998413085938 2 634.401496 1266.78844 NaN NaN NaN NaN NaN NaN NaN 90.781 1 94.471 93.971 94.971 3.6899 0 0 0 0.53105 1 22671 22671 0.40072 0 1 + 31002 31297 19688 19699 35698 35698 0.165715406079471 PLRASNASF 9 Unmodified _PLRASNASF_ 0 0 0 REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 481.7562561035156 2 481.756341 961.498129 0.13698 6.599E-05 0.033589 1.6182E-05 0.17057 8.2172E-05 481.756312441568 51.758 0.63777 55.281 54.915 55.552 3.5227 115 60 2 0 0 0 0.41259 2 10677 10677;10750 7.2892 0 1 607030 + + 31003 17475 19689 19700 35699;35700 35699 0.015840166119460264 PLRASNASF 9 Unmodified _PLRASNASF_ 0 0 0 REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 481.7563781738281 2 481.756341 961.498129 0.24992 0.0001204 -0.072224 -3.4794E-05 0.1777 8.5608E-05 481.75622467317834 51.624 0.70421 55.266 54.893 55.598 3.6413 132 68 3 0 0 0 0.36392 1 10661 10661 10.074 0 1 641450 + + 31004 17475 19689 19700 35701 35701 0.015840166119460264 PLRASNASF 9 Unmodified _PLRASNASF_ 0 0 0 REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 481.75628662109375 2 481.756341 961.498129 0.099653 4.8008E-05 0.026483 1.2758E-05 0.12614 6.0767E-05 481.7562832910331 51.653 0.69871 55.263 55.003 55.702 3.6105 116 72 2 0 0 0 0.49026 1 10546 10546 1.6526 0 1 627910 + + 31005 17475 19689 19700 35702 35702 0.015840166119460264 PLRASNASF 9 Unmodified _PLRASNASF_ 0 0 0 REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant REV__KRT6C|p.I333Sfs*55|1|0.29|ENSG00000170465|chr12:52471212-52471212|T/-|frameshift_variant MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 481.756341 961.498129 0.24992 0.0001204 -0.072224 -3.4794E-05 0.1777 8.5608E-05 481.75622467317834 51.624 0.70421 55.266 54.893 55.598 3.6413 -0.0041313 -6.529E-05 NaN 10.074 132 68 3 NaN NaN NaN NaN 0 NaN NaN 0 641450 + + 31006 17475 19689 19700 0.015840166119460264 PLRCMLPF 8 Unmodified _PLRCMLPF_ 0 0 0 Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|1|1|sense Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|1|1|sense Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 488.7473449707031 2 488.758984 975.503414 NaN NaN NaN NaN NaN NaN NaN 69.964 1 73.24 72.74 73.74 3.2761 0 0 0 0.40604 1 17019 17019 2.5775 0 1 31007 33265 19690 19701 35703 35703 0.014682808785437373 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 501.2910461425781 2 501.290982 1000.56741 0.3111 0.00015595 -0.32113 -0.00016098 -0.010028 -5.027E-06 501.2907109846464 92.289 0.062943 92.289 92.258 92.321 0 8 5 2 0 0 0 0.82752 1 22334 22334 0 0 1 275310 + 31008 22299 19691 19702 35704 35704 0.0671506103548154 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 501.290982 1000.56741 0.3111 0.00015595 -0.32113 -0.00016098 -0.010028 -5.027E-06 501.2907109846464 92.289 0.062943 92.289 92.258 92.321 0 0.18258 0.00034608 NaN 0 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 275310 + 31009 22299 19691 19702 0.0671506103548154 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 501.290982 1000.56741 0.34987 0.00017539 -0.93822 -0.00047032 -0.58835 -0.00029493 501.29038152571275 88.821 0.57422 92.273 91.91 92.484 3.4525 0.16732 -0.0002726 NaN 0 113 80 2 NaN NaN NaN NaN 0 NaN NaN 0 64058 + 31010 22299 19691 19702 0.0671506103548154 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.290982 1000.56741 0.28325 0.00014199 0.087889 4.4058E-05 0.37114 0.00018605 501.7926910804762 88.55 0.033844 91.943 91.919 91.953 3.3931 -0.16288 0.00075616 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 34617 + 31011 22299 19691 19702 0.0671506103548154 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 501.290982 1000.56741 0.20193 0.00010123 -0.60714 -0.00030435 -0.40521 -0.00020313 501.2905876555259 88.504 0.73131 92.127 91.746 92.478 3.6229 0.02085 5.9335E-05 NaN 0 141 89 2 NaN NaN NaN NaN 0 NaN NaN 0 231700 + 31012 22299 19691 19702 0.0671506103548154 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 501.290982 1000.56741 0.2932 0.00014698 -0.90715 -0.00045475 -0.61395 -0.00030777 501.29038510473737 88.064 0.045502 91.791 91.767 91.812 3.7279 -0.31458 -0.00024145 NaN 0 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 54223 + 31013 22299 19691 19702 0.0671506103548154 PLRCRLML 8 Unmodified _PLRCRLML_ 0 0 0 REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF REV__ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 501.290982 1000.56741 0.27818 0.00013945 -0.49137 -0.00024632 -0.21319 -0.00010687 501.290530473347 88.402 0.55228 92.213 91.956 92.508 3.8104 0.10672 0.00017541 NaN 0 108 69 2 NaN NaN NaN NaN 0 NaN NaN 0 220340 + 31014 22299 19691 19702 0.0671506103548154 PLRELRQLR 9 Unmodified _PLRELRQLR_ 0 0 0 REV__ENSG00000167513|ENST00000301019|CDT1 REV__ENSG00000167513|ENST00000301019|CDT1 MSMS UPN47_class_I_Rep_1 2 590.8665161132812 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 95.027 1 98.777 98.277 99.277 3.7508 0 0 0 0.4007 1 23593 23593 0.52476 0 1 + 31015 20220 19692 19703 35705 35705 0.13735296028107769 PLRLQRFPVFK 11 Unmodified _PLRLQRFPVFK_ 0 0 0 ENST00000505608.1_1_3:129350939-129351086:-|nuORF ENST00000505608.1_1_3:129350939-129351086:-|nuORF ENST00000505608.1_1_3:129350939-129351086:-|nuORF MSMS UPN46_class_I_Rep_3 1 467.6235656738281 3 467.622351 1399.84522 NaN NaN NaN NaN NaN NaN NaN 106.68 1 106.68 106.18 107.18 0 0 0 0 0.38417 1 26017 26017 2.8433 1.5136 1 31016 7150 19693 19704 35706 35706 0.16129588164494635 PLRLQRFPVFK 11 Unmodified _PLRLQRFPVFK_ 0 0 0 ENST00000505608.1_1_3:129350939-129351086:-|nuORF ENST00000505608.1_1_3:129350939-129351086:-|nuORF ENST00000505608.1_1_3:129350939-129351086:-|nuORF MSMS UPN46_class_I_Rep_3 1 467.6236877441406 3 467.622351 1399.84522 NaN NaN NaN NaN NaN NaN NaN 106.77 1 106.77 106.27 107.27 0 0 0 0 0.38417 1 26041 26041 2.8433 1.5136 1 31017 7150 19693 19704 35707 35707 0.16129588164494635 PLRLTAVKSFH 11 Unmodified _PLRLTAVKSFH_ 0 0 0 REV__L1PA7_dup1285|chr2:108643202-108646694:+|6.090283871890703|0.2202551023445145|4.79|151.0|7|1|sense REV__L1PA7_dup1285|chr2:108643202-108646694:+|6.090283871890703|0.2202551023445145|4.79|151.0|7|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 634.3776245117188 2 634.877322 1267.74009 0.5136 0.00032607 1.3944 0.0008853 1.908 0.0012114 634.8788139983567 104.81 0.1685 108.34 108.31 108.48 3.5308 48 26 3 0 0 0 22.551 1 25693 25693 4.897 1.6157 1 49020000 + 31018 30021 19694 19705 35708 35708 0.11693046968093768 PLRLTAVKSFH 11 Unmodified _PLRLTAVKSFH_ 0 0 0 REV__L1PA7_dup1285|chr2:108643202-108646694:+|6.090283871890703|0.2202551023445145|4.79|151.0|7|1|sense REV__L1PA7_dup1285|chr2:108643202-108646694:+|6.090283871890703|0.2202551023445145|4.79|151.0|7|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 634.877322 1267.74009 0.72696 0.00046153 4.4363 0.0028165 5.1633 0.003278 634.8782033002902 108.67 0.044724 108.67 108.64 108.68 0 0.16654 0.003592 NaN 4.897 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1363700 + 31019 30021 19694 19705 0.11693046968093768 PLRPSLNISRL 11 Unmodified _PLRPSLNISRL_ 0 0 0 Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|39|1|sense;Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|173|3|sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|39|1|sense Harlequin-int_dup87|chr1:247898784-247904275:-|2.86157466098925|0.0641750281364752|5.48|151.0|39|1|sense MSMS UPN48_class_I_Rep_2 6 633.3865966796875 2 633.388054 1264.76155 NaN NaN NaN NaN NaN NaN NaN 85.2 1 88.906 88.406 89.406 3.7058 0 0 0 0.38417 1 20257 20257 4.897 0.70751 1 31020 7965 19695 19706 35709 35709 0.13976431996775318 PLRQPLLGW 9 Unmodified _PLRQPLLGW_ 0 0 0 REV__ENST00000398058.5_1_21:45374496-45374712:+|nuORF REV__ENST00000398058.5_1_21:45374496-45374712:+|nuORF MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 23.372 1 23.372 22.872 23.872 0 0 0 0 0.40038 1 2920 2920 0.6015 0 1 + 31021 22139 19696 19707 35710 35710 0.09258032330808419 PLRQSPVPGV 10 Unmodified _PLRQSPVPGV_ 0 0 0 ENST00000470620.1_1_6:149944404-149969679:-|nuORF ENST00000470620.1_1_6:149944404-149969679:-|nuORF ENST00000470620.1_1_6:149944404-149969679:-|nuORF MSMS UPN46_class_I_Rep_3 1 525.310302734375 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 102.07 1 102.07 101.57 102.57 0 0 0 0 0.53105 1 24907 24907 1.6526 0.32309 1 31022 6919 19697 19708 35711 35711 0.08057138088520333 PLRQWLTQR 9 Unmodified _PLRQWLTQR_ 0 0 0 L1PB1_dup4753|chr6:4838975-4841956:-|2.1691850045486305|0.02638981642343|6.36|151.0|96|3|sense L1PB1_dup4753|chr6:4838975-4841956:-|2.1691850045486305|0.02638981642343|6.36|151.0|96|3|sense L1PB1_dup4753|chr6:4838975-4841956:-|2.1691850045486305|0.02638981642343|6.36|151.0|96|3|sense MSMS UPN48_class_I_Rep_1 5 599.3467407226562 2 599.346189 1196.67783 NaN NaN NaN NaN NaN NaN NaN 33.871 1 37.391 36.891 37.891 3.5201 0 0 0 0.39518 1 5343 5343 1.8442 0 1 31023 15117 19698 19709 35712 35712 0.08735320619712184 PLRQYRRKL 9 Unmodified _PLRQYRRKL_ 0 0 0 REV__HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|51|3|sense REV__HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|51|3|sense MSMS UPN46_class_I_Rep_3 1 615.3954467773438 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 100.88 1 100.88 100.38 101.38 0 0 0 0 0.40038 1 24603 24603 0.6015 0 1 + 31024 23339 19699 19710 35713 35713 0.14643288782053787 PLRTAQYN 8 Unmodified _PLRTAQYN_ 0 0 0 ENSG00000112902|ENST00000382496|SEMA5A;nc|ENSG00000082684|Q9P283-2|SEMA5B;nc|ENSG00000082684|Q9P283-3|SEMA5B;ENSG00000082684|ENST00000357599|SEMA5B;nc|ENSG00000082684|Q9P283-4|SEMA5B ENSG00000112902|ENST00000382496|SEMA5A ENSG00000112902|ENST00000382496|SEMA5A MULTI-MSMS UPN47_class_I_Rep_3 4 481.756103515625 2 481.756341 961.498129 0.189 9.1053E-05 -0.18914 -9.1118E-05 -0.00013499 -6.5033E-08 481.75617542035553 51.649 0.87809 54.862 54.643 55.521 3.2125 111 49 3 0 0 0 0.82752 1 11538 11538 12.532 0 1 320850 31025 1232 19700 19711 35714 35714 0.015840166119346577 PLSFFFHFNF 10 Unmodified _PLSFFFHFNF_ 0 0 0 L1PA3_dup3846|chr5:150742838-150748950:+|6.15701709038747|0.3295787964843827|4.22|151.0|222|1|anti-sense L1PA3_dup3846|chr5:150742838-150748950:+|6.15701709038747|0.3295787964843827|4.22|151.0|222|1|anti-sense L1PA3_dup3846|chr5:150742838-150748950:+|6.15701709038747|0.3295787964843827|4.22|151.0|222|1|anti-sense MSMS UPN47_class_I_Rep_3 4 434.8819274902344 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 35.642 1 38.897 38.397 39.397 3.2547 0 0 0 0.53105 1 6626 6626 1.9064 0.1641 1 31026 14260 19701 19712 35715 35715 -0.015416912516684533 PLSFIKTLWF 10 Unmodified _PLSFIKTLWF_ 0 0 0 MLT1F2-int_dup202|chr10:73217849-73219121:-|1.2438415248420789|0.1143515404493411|3.44|149.0|81|3|anti-sense MLT1F2-int_dup202|chr10:73217849-73219121:-|1.2438415248420789|0.1143515404493411|3.44|149.0|81|3|anti-sense MLT1F2-int_dup202|chr10:73217849-73219121:-|1.2438415248420789|0.1143515404493411|3.44|149.0|81|3|anti-sense MSMS UPN48_class_I_Rep_3 7 417.92041015625 3 417.909387 1250.70633 NaN NaN NaN NaN NaN NaN NaN 43.155 1 46.794 46.294 47.294 3.6385 0 0 0 0.53105 1 7997 7997 1.9064 0.57673 1 31027 16401 19702 19713 35716 35716 0.09100625476321511 PLSKEDAGE 9 Unmodified _PLSKEDAGE_ 0 0 0 ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7;ENST00000512512.3_1_4:57897485-57931766:-|nuORF ENSG00000163453|ENST00000295666|IGFBP7 ENSG00000163453|ENST00000295666|IGFBP7 MSMS UPN48_class_I_Rep_3 7 473.229736328125 2 473.229822 944.445091 NaN NaN NaN NaN NaN NaN NaN 92.2 1 96.079 95.579 96.579 3.8782 0 0 0 0.37692 1 21865 21865 6.2058 0.44535 1 31028 4002 19703 19714 35717 35717 -0.029354059613865502 PLSQSFQR 8 Unmodified _PLSQSFQR_ 0 0 0 L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|124|3|sense L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|124|3|sense L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|124|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 481.7557678222656 2 481.756341 961.498129 0.24992 0.0001204 -0.072224 -3.4794E-05 0.1777 8.5608E-05 481.75622467317834 51.624 0.70421 55.266 54.893 55.598 3.6413 132 68 3 0 0 0 0.82752 1 10590 10590 8.5933 0 1 641450 31029 14664 19704 19715 35718 35718 0.015840166119460264 PLSRNSKGFII 11 Unmodified _PLSRNSKGFII_ 0 0 0 MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|39|1|anti-sense MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|39|1|anti-sense MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|39|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 411.2435302734375 3 411.243429 1230.70846 0.082146 3.3782E-05 0.44606 0.00018344 0.5282 0.00021722 411.2435270063762 91.351 0.39909 95.106 94.842 95.241 3.7554 99 60 2 0 0 0 0.64331 1 21718 21718 3.8459 0.25885 1 6138800 31030 15902 19705 19716 35719 35719 0.10233054214131698 PLSRPIFLPQ 10 Unmodified _PLSRPIFLPQ_ 0 0 0 REV__L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|70|3|anti-sense REV__L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|70|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.347900390625 2 584.347866 1166.68118 0.52623 0.0003075 0.53287 0.00031138 1.0591 0.00061888 584.3480600711414 108.83 0.69348 108.83 108.68 109.37 0 104 52 3 0 0 0 0.52562 1 26708 26708 8.7454 0.58988 1 32950000 + 31031 25216 19706 19717 35720 35720 0.10450570673742732 PLSSRQFTL 9 Unmodified _PLSSRQFTL_ 0 0 0 REV__L1MEg_dup3073|chr3:121950130-121951104:-|2.477228424978399|0.009579026607627|8.01|151.0|52|1|anti-sense REV__L1MEg_dup3073|chr3:121950130-121951104:-|2.477228424978399|0.009579026607627|8.01|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_1 5 524.7938232421875 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 66.6 1 70.052 69.552 70.552 3.4516 0 0 0 0.3377 1 15242 15242 8.7454 0 1 + 31032 28748 19707 19718 35721 35721 0.049411453345555856 PLSTFRQN 8 Unmodified _PLSTFRQN_ 0 0 0 ENSG00000254726|ENST00000532414|MEX3A ENSG00000254726|ENST00000532414|MEX3A ENSG00000254726|ENST00000532414|MEX3A MULTI-MSMS UPN47_class_I_Rep_1 2 481.7565002441406 2 481.756341 961.498129 0.018979 9.1433E-06 0.036158 1.7419E-05 0.055137 2.6563E-05 481.7563216071192 51.172 1.0817 54.765 54.45 55.531 3.5932 96 53 3 0 0 0 0.82752 1 11328 11328 12.532 0 1 329800 31033 5758 19708 19719 35722 35722 0.015840166119460264 PLSVERESH 9 Unmodified _PLSVERESH_ 0 0 0 Tigger1_dup123|chr1:32805983-32806428:-|1.320267927406906|0.0433528942076348|4.93|151.0|4|1|sense Tigger1_dup123|chr1:32805983-32806428:-|1.320267927406906|0.0433528942076348|4.93|151.0|4|1|sense Tigger1_dup123|chr1:32805983-32806428:-|1.320267927406906|0.0433528942076348|4.93|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 526.8214721679688 2 527.269813 1052.52507 NaN NaN NaN NaN NaN NaN NaN 68.487 1 68.487 67.987 68.987 0 0 0 0 0.38478 1 15642 15642 4.3292 0 1 31034 33033 19709 19720 35723 35723 0.0009108043248033937 PLSVLGSSLL 10 Unmodified _PLSVLGSSLL_ 0 0 0 L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|93|1|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|93|1|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|93|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.29827880859375 2 493.30005 984.585547 0.29716 0.00014659 -1.3917 -0.00068652 -1.0945 -0.00053993 493.29944993970577 50.541 0.57019 53.884 53.661 54.232 3.3431 48 29 2 0 0 0 0.47413 1 11080 11080 13.906 3.8321 1 96192 31035 12212 19710 19721 35724 35724 0.09263797762855575 PLSVRQALGS 10 Unmodified _PLSVRQALGS_ 0 0 0 REV__L1PA10_dup1526|chr4:15817765-15819003:+|3.1622451354861|0.0325858692191662|6.6|151.0|29|3|sense REV__L1PA10_dup1526|chr4:15817765-15819003:+|3.1622451354861|0.0325858692191662|6.6|151.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.2981567382812 2 514.298373 1026.58219 0.32163 0.00016541 -0.57399 -0.0002952 -0.25236 -0.00012979 514.2982019575707 87.533 0.38416 90.92 90.707 91.091 3.3873 61 45 2 0 0 0 0.56078 1 21927 21927 3.2813 0 1 129810 + 31036 28933 19711 19722 35725 35725 0.06996547708831713 PLSVRVALAFI 11 Unmodified _PLSVRVALAFI_ 0 0 0 REV__nc|ENSG00000119403|Q5T6S3-2|PHF19 REV__nc|ENSG00000119403|Q5T6S3-2|PHF19 MSMS UPN46_class_I_Rep_3 1 593.36962890625 2 593.371341 1184.72813 NaN NaN NaN NaN NaN NaN NaN 108.08 1 108.08 107.58 108.58 0 0 0 0 0.2482 1 26400 26400 15.248 2.206 1 + 31037 31969 19712 19723 35726 35726 0.14315430224905867 PLSVRVALAFI 11 Unmodified _PLSVRVALAFI_ 0 0 0 REV__nc|ENSG00000119403|Q5T6S3-2|PHF19 REV__nc|ENSG00000119403|Q5T6S3-2|PHF19 MSMS UPN46_class_I_Rep_3 1 593.37060546875 2 593.371341 1184.72813 NaN NaN NaN NaN NaN NaN NaN 108.19 1 108.19 107.69 108.69 0 0 0 0 0.22906 1 26439 26439 16.149 3.9084 1 + 31038 31969 19712 19723 35727 35727 0.14315430224905867 PLSVVVVFFFK 11 Unmodified _PLSVVVVFFFK_ 0 0 0 REV__L1PA6_dup5855|chr22:17932085-17936587:+|1.3971618577956435|0.0634454800697639|4.46|151.0|151|1|anti-sense REV__L1PA6_dup5855|chr22:17932085-17936587:+|1.3971618577956435|0.0634454800697639|4.46|151.0|151|1|anti-sense MSMS UPN47_class_I_Rep_2 3 641.3831787109375 2 641.383917 1280.75328 NaN NaN NaN NaN NaN NaN NaN 98.106 1 101.59 101.09 102.09 3.4836 0 0 0 0.38417 1 24062 24062 1.3295 0.13619 1 + 31039 29946 19713 19724 35728 35728 0.12413485027445859 PLTATKRR 8 Unmodified _PLTATKRR_ 0 0 0 REV__Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|57|3|sense REV__Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|57|3|sense MSMS UPN48_class_I_Rep_1 5 471.79559326171875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.394 1 64.862 64.362 65.362 3.4678 0 0 0 0.40738 1 13655 13655 0.79363 0 1 + 31040 32527 19714 19725 35729 35729 0.1039228863688777 PLTGHQRW 8 Unmodified _PLTGHQRW_ 0 0 0 REV__ENSG00000161509|ENST00000293190|GRIN2C REV__ENSG00000161509|ENST00000293190|GRIN2C MSMS UPN48_class_I_Rep_1 5 497.7648620605469 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 113.66 1 117.29 116.79 117.79 3.6314 0 0 0 0.40604 1 27617 27617 2.5775 0 1 + 31041 19905 19715 19726 35730 35730 0.01743142568705025 PLTKVQTL 8 Unmodified _PLTKVQTL_ 0 0 0 REV__nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1 REV__nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1 MULTI-MSMS UPN48_class_I_Rep_1 5 450.28192138671875 2 450.28166 898.548768 0.023795 1.0714E-05 -0.29819 -0.00013427 -0.2744 -0.00012356 450.2814065894679 41.813 1.2037 45.321 44.932 46.135 3.5079 279 118 3 0 0 0 0.82752 2 7578 7578;7763 40.449 0 1 1238200 + 31042 21160 19716 19727 35731;35732 35731 0.09543545936958253 PLTLCQRL 8 Unmodified _PLTLCQRL_ 0 0 0 REV__AluJo_dup47561|chr11:73385745-73386044:+|1.8536988505861105|0.1344046872940376|3.79|151.0|21|3|anti-sense REV__AluJo_dup47561|chr11:73385745-73386044:+|1.8536988505861105|0.1344046872940376|3.79|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_3 7 472.2719421386719 2 472.273312 942.532072 NaN NaN NaN NaN NaN NaN NaN 37.318 1 40.981 40.481 41.481 3.663 0 0 0 0.40625 1 6278 6278 2.3027 0 1 + 31043 16999 19717 19728 35733 35733 0.05850721779336254 PLTNLFKVW 9 Unmodified _PLTNLFKVW_ 0 0 0 nc|ENSG00000124207|P55060-2|CSE1L nc|ENSG00000124207|P55060-2|CSE1L nc|ENSG00000124207|P55060-2|CSE1L MULTI-MSMS UPN48_class_I_Rep_1 5 559.3238525390625 2 559.32386 1116.63317 0.50852 0.00028443 -0.61264 -0.00034266 -0.10412 -5.8236E-05 559.323475456833 69.272 0.56144 72.727 72.434 72.995 3.4548 57 40 2 0 0 0 0.46869 1 16021 16021 3.9444 1.6417 1 154400 31044 16678 19718 19729 35734 35734 0.07951496753685205 PLTSKKKT 8 Unmodified _PLTSKKKT_ 0 0 0 REV__ENST00000503952.5_1_4:128606686-128637588:+|nuORF REV__ENST00000503952.5_1_4:128606686-128637588:+|nuORF MSMS UPN47_class_I_Rep_1 2 452.2516784667969 2 451.78711 901.559667 NaN NaN NaN NaN NaN NaN NaN 25.999 1 29.761 29.261 30.261 3.7624 0 0 0 0.40738 1 3655 3655 0.79363 0 1 + 31045 20026 19719 19730 35735 35735 0.10494948311225016 PLTSTAVGPV 10 Unmodified _PLTSTAVGPV_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MSMS UPN47_class_I_Rep_1 2 471.2682800292969 2 471.26875 940.522947 NaN NaN NaN NaN NaN NaN NaN 71.532 1 74.907 74.407 75.407 3.3751 0 0 0 0.53105 1 17447 17447 3.5965 1.7523 1 + 31046 18645 19720 19731 35736 35736 0.0503065169467618 PLTSTAVGPV 10 Unmodified _PLTSTAVGPV_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MSMS UPN47_class_I_Rep_1 2 471.2684631347656 2 471.26875 940.522947 NaN NaN NaN NaN NaN NaN NaN 71.66 1 75.035 74.535 75.535 3.3751 0 0 0 0.53105 1 17486 17486 3.5965 1.7523 1 + 31047 18645 19720 19731 35737 35737 0.0503065169467618 PLTSTAVGPV 10 Unmodified _PLTSTAVGPV_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MSMS UPN47_class_I_Rep_1 2 471.2689514160156 2 471.26875 940.522947 NaN NaN NaN NaN NaN NaN NaN 71.81 1 75.185 74.685 75.685 3.3751 0 0 0 0.53105 1 17531 17531 3.5965 1.5367 1 + 31048 18645 19720 19731 35738 35738 0.0503065169467618 PLTSTAVGPV 10 Unmodified _PLTSTAVGPV_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS UPN47_class_I_Rep_2 3 471.2686767578125 2 471.26875 940.522947 0.056527 2.664E-05 -0.00070739 -3.3337E-07 0.05582 2.6306E-05 471.2687132096386 71.89 0.44414 75.179 74.891 75.335 3.2899 54 36 2 0 0 0 0.56033 1 17576 17576 3.5965 1.7523 1 68729 + 31049 18645 19720 19731 35739 35739 0.0503065169467618 PLTSTAVGPV 10 Unmodified _PLTSTAVGPV_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS UPN47_class_I_Rep_3 4 471.2684326171875 2 471.26875 940.522947 -0.0052279 -2.4637E-06 0.23549 0.00011098 0.23027 0.00010852 471.2688250174241 71.835 0.52164 75.054 74.856 75.378 3.2188 62 42 2 0 0 0 0.56033 1 17664 17664 3.5965 1.7523 1 68809 + 31050 18645 19720 19731 35740 35740 0.0503065169467618 PLTTATLGAL 10 Unmodified _PLTTATLGAL_ 0 0 0 nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 MSMS UPN47_class_I_Rep_2 3 479.2850036621094 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 65.602 1 68.857 68.357 69.357 3.2556 0 0 0 0.53105 1 15707 15707 13.906 0 1 31051 5147 19721 19732 35741 35741 0.07423224728779587 PLTVCSYVSD 10 Unmodified _PLTVCSYVSD_ 0 0 0 REV__nc|ENSG00000145555|Q9HD67-3|MYO10 REV__nc|ENSG00000145555|Q9HD67-3|MYO10 MSMS UPN47_class_I_Rep_2 3 542.2534790039062 2 542.254982 1082.49541 NaN NaN NaN NaN NaN NaN NaN 23.103 1 26.548 26.048 27.048 3.4447 0 0 0 0.53105 1 2855 2855 1.4819 0.68827 1 + 31052 19516 19722 19733 35742 35742 -0.04253619627866101 PLTWESQLSG 10 Unmodified _PLTWESQLSG_ 0 0 0 ENSG00000177558|ENST00000324675|FAM187B ENSG00000177558|ENST00000324675|FAM187B ENSG00000177558|ENST00000324675|FAM187B MULTI-MSMS UPN48_class_I_Rep_3 7 559.2796020507812 2 559.279846 1116.54514 0.32994 0.00018453 -0.32616 -0.00018242 0.0037764 2.1121E-06 559.2796423741614 42.296 0.63039 45.937 45.644 46.274 3.6415 84 56 2 0 0 0 0.56118 1 7727 7727 2.9952 0.41776 1 141530 31053 4798 19723 19734 35743 35743 -0.00847168627569772 PLVGFDIKEK 10 Unmodified _PLVGFDIKEK_ 0 0 0 Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|12|3|sense Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|12|3|sense Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|12|3|sense MSMS UPN48_class_I_Rep_1 5 573.3302612304688 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 88.997 1 92.62 92.12 93.12 3.6229 0 0 0 0.53105 1 21358 21358 2.9952 0.26005 1 31054 491 19724 19735 35744 35744 0.08267158199919322 PLVGFDIKEK 10 Unmodified _PLVGFDIKEK_ 0 0 0 Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|12|3|sense Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|12|3|sense Charlie1a_dup615|chr2:39093844-39094365:+|1.4074731438825523|0.0057534141709261|7.93|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 573.3292236328125 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 89.487 1 93.317 92.817 93.817 3.8293 0 0 0 0.53105 1 21245 21245 9.3831 3.1773 1 31055 491 19724 19735 35745 35745 0.08267158199919322 PLVGISSLSNI 11 Unmodified _PLVGISSLSNI_ 0 0 0 REV__L1MC5_dup10142|chr11:73710907-73712012:-|1.9592848728958467|0.0975544883578474|4.33|151.0|60|2|anti-sense REV__L1MC5_dup10142|chr11:73710907-73712012:-|1.9592848728958467|0.0975544883578474|4.33|151.0|60|2|anti-sense MSMS UPN48_class_I_Rep_2 6 550.32080078125 2 550.321514 1098.62847 NaN NaN NaN NaN NaN NaN NaN 89.801 1 93.548 93.048 94.048 3.7471 0 0 0 0.38417 1 21406 21406 2.9952 0.93549 1 + 31056 27050 19725 19736 35746 35746 0.08310567820262804 PLVILIVLVLW 11 Unmodified _PLVILIVLVLW_ 0 0 0 ENSG00000158481|ENST00000368170|CD1C ENSG00000158481|ENST00000368170|CD1C ENSG00000158481|ENST00000368170|CD1C MULTI-SECPEP UPN48_class_I_Rep_2 6 638.9323120117188 2 639.43341 1276.85227 0.49881 0.00031895 0.1183 7.5646E-05 0.61711 0.0003946 639.4333927418772 108.3 0.21498 111.98 111.92 112.13 3.6746 29 23 2 0 0 0 22.551 1 25664 25664 1.4819 1.4819 1 2342400 31057 3800 19726 19737 35747 35747 0.2249150799234485 PLVKIIPKLLI 11 Unmodified _PLVKIIPKLLI_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MSMS UPN46_class_I_Rep_3 1 623.7477416992188 2 623.946685 1245.87882 NaN NaN NaN NaN NaN NaN NaN 49.105 1 49.105 48.605 49.605 0 0 0 0 0.38417 1 10285 10285 0 0 1 + 31058 20546 19727 19738 35748 35748 0.26571196883696757 PLVLARKKRLQ 11 Unmodified _PLVLARKKRLQ_ 0 0 0 REV__L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense REV__L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense MSMS UPN47_class_I_Rep_3 4 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 18.79 1 22.144 21.644 22.644 3.3545 0 0 0 0.38417 1 1632 1632 0.094841 0 1 + 31059 30489 19728 19739 35749 35749 0.22417277055842533 PLVLLFEW 8 Unmodified _PLVLLFEW_ 0 0 0 REV__MLT1H_dup2576|chr4:48508517-48509045:-|1.190941174902331|0.4768149846474339|1.32|149.0|29|2|anti-sense REV__MLT1H_dup2576|chr4:48508517-48509045:-|1.190941174902331|0.4768149846474339|1.32|149.0|29|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 508.79296875 2 508.794404 1015.57425 0.30733 0.00015637 -1.8744 -0.00095367 -1.567 -0.0007973 509.29584775705143 82.252 0.092232 82.252 82.21 82.302 0 9 7 2 0 0 0 0.82752 1 19480 19480 0.79363 0 1 44549 + 31060 31742 19729 19740 35750 35750 0.06709020459368276 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-SECPEP UPN47_class_I_Rep_1 2 626.8902587890625 2 627.382437 1252.75032 0.55769 0.00034988 0.067488 4.2341E-05 0.62518 0.00039223 627.8846092679995 104.08 0.086464 107.85 107.8 107.88 3.7627 20 13 2 0 0 0 22.551 1 25574 25574 5.7319 0 1 15993000 31061 4124 19730 19741 35751 35751 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-SECPEP UPN47_class_I_Rep_1 2 626.8900756835938 2 627.382437 1252.75032 0.55758 0.00034982 0.54268 0.00034047 1.1003 0.00069028 627.3824916467919 105.66 0.24618 109.4 109.36 109.6 3.7395 52 34 2 0 0 0 22.551 1 25915 25915 5.7319 0.43497 1 611380 31062 4124 19730 19741 35752 35752 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-MSMS UPN47_class_I_Rep_3 4 627.3832397460938 2 627.382437 1252.75032 0.51264 0.00032162 0.18598 0.00011668 0.69862 0.0004383 627.3824096752857 104.81 0.19852 108.34 108.2 108.4 3.5308 79 30 3 0 0 0 0.57992 1 25659 25659 5.7319 0 1 32129000 31063 4124 19730 19741 35753 35753 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MSMS UPN48_class_I_Rep_2 6 627.381103515625 2 627.382437 1252.75032 NaN NaN NaN NaN NaN NaN NaN 103.12 1 106.83 106.33 107.33 3.7108 0 0 0 0.35398 1 24414 24414 8.7454 3.0136 1 31064 4124 19730 19741 35754 35754 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-SECPEP UPN48_class_I_Rep_2 6 626.8892822265625 2 627.382437 1252.75032 0.49526 0.00031072 -0.32359 -0.00020302 0.17167 0.0001077 627.3827559436979 104.5 0.20726 108.2 108.17 108.38 3.6991 84 28 4 0 0 0 22.551 1 24745 24745 5.7319 0.43497 1 23534000 31065 4124 19730 19741 35755 35755 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-SECPEP UPN48_class_I_Rep_3 7 626.88916015625 2 627.382437 1252.75032 0.60228 0.00037786 0.26603 0.0001669 0.86831 0.00054476 627.38260686119 105.02 0.28941 108.74 108.54 108.83 3.7192 64 42 2 0 0 0 22.551 1 24776 24776 8.1555 2.8586 1 4065000 31066 4124 19730 19741 35756 35756 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-MATCH UPN47_class_I_Rep_2 3 2 627.382437 1252.75032 0.63466 0.00039817 0.18531 0.00011626 0.81997 0.00051443 627.3827469367757 105.7 0.11909 109.23 109.14 109.26 3.5327 -0.20497 -0.00064237 NaN 5.7319 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1194300 31067 4124 19730 19741 0.1340560990265658 PLVLSEARKQL 11 Unmodified _PLVLSEARKQL_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-MATCH UPN48_class_I_Rep_2 6 2 627.382437 1252.75032 0.49508 0.00031061 2.567 0.0016105 3.062 0.0019211 627.884885257304 105.82 0.033821 109.5 109.48 109.51 3.6834 0.065123 0.002346 NaN 5.7319 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 130430 31068 4124 19730 19741 0.1340560990265658 PLVMTYIY 8 Unmodified _PLVMTYIY_ 0 0 0 REV__MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense REV__MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.27337646484375 2 500.264622 998.514691 -0.43172 -0.00021597 -1.2873 -0.00064401 -1.7191 -0.00085998 500.2634211148359 27.706 0.064318 31.048 31.001 31.065 3.3422 6 5 2 0 0 0 0.82752 1 4239 4239 0.79363 0 1 24705 + 31069 31317 19731 19742 35757 35757 0.015373814536587815 PLVMTYIY 8 Unmodified _PLVMTYIY_ 0 0 0 REV__MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense REV__MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 500.264622 998.514691 -0.43172 -0.00021597 -1.2873 -0.00064401 -1.7191 -0.00085998 500.2634211148359 27.706 0.064318 31.048 31.001 31.065 3.3422 0.063626 -0.00084005 NaN 0.79363 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 24705 + 31070 31317 19731 19742 0.015373814536587815 PLVMTYIY 8 Unmodified _PLVMTYIY_ 0 0 0 REV__MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense REV__MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 500.264622 998.514691 0.27396 0.00013705 0.066182 3.3109E-05 0.34014 0.00017016 500.7662993563929 27.358 0.047365 30.921 30.891 30.939 3.5629 -0.063626 0.00051418 NaN 0.79363 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 22992 + 31071 31317 19731 19742 0.015373814536587815 PLVPLRKLLL 10 Unmodified _PLVPLRKLLL_ 0 0 0 ENSG00000185112|ENST00000329759|FAM43A ENSG00000185112|ENST00000329759|FAM43A ENSG00000185112|ENST00000329759|FAM43A MSMS UPN48_class_I_Rep_3 7 581.4058837890625 2 581.407727 1160.8009 NaN NaN NaN NaN NaN NaN NaN 108.16 1 111.84 111.34 112.34 3.6813 0 0 0 0.53105 1 25566 25566 0.40072 0 1 31072 5086 19732 19743 35758 35758 0.2269318401831697 PLVVPVKTC 9 Unmodified _PLVVPVKTC_ 0 0 0 REV__Charlie1a_dup4865|chr15:72489309-72489689:+|2.9908285944050395|0.0409519361085676|6.19|151.0|18|1|anti-sense REV__Charlie1a_dup4865|chr15:72489309-72489689:+|2.9908285944050395|0.0409519361085676|6.19|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 478.28570556640625 2 478.285889 954.557224 NaN NaN NaN NaN NaN NaN NaN 32.416 1 36.066 35.566 36.566 3.6497 0 0 0 0.3967 1 5005 5005 1.4819 0.79152 1 + 31073 17335 19733 19744 35759 35759 0.0781277658190902 PLVVPVKTC 9 Unmodified _PLVVPVKTC_ 0 0 0 REV__Charlie1a_dup4865|chr15:72489309-72489689:+|2.9908285944050395|0.0409519361085676|6.19|151.0|18|1|anti-sense REV__Charlie1a_dup4865|chr15:72489309-72489689:+|2.9908285944050395|0.0409519361085676|6.19|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 478.2754211425781 2 478.285889 954.557224 NaN NaN NaN NaN NaN NaN NaN 32.101 1 35.802 35.302 36.302 3.7015 0 0 0 0.3967 1 4837 4837 1.4819 0.68827 1 + 31074 17335 19733 19744 35760 35760 0.0781277658190902 PLVVPVKTC 9 Unmodified _PLVVPVKTC_ 0 0 0 REV__Charlie1a_dup4865|chr15:72489309-72489689:+|2.9908285944050395|0.0409519361085676|6.19|151.0|18|1|anti-sense REV__Charlie1a_dup4865|chr15:72489309-72489689:+|2.9908285944050395|0.0409519361085676|6.19|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 478.2772216796875 2 478.285889 954.557224 NaN NaN NaN NaN NaN NaN NaN 32.153 1 35.855 35.355 36.355 3.7015 0 0 0 0.3967 1 4852 4852 1.4819 0.95714 1 + 31075 17335 19733 19744 35761 35761 0.0781277658190902 PLVWFASVI 9 Unmodified _PLVWFASVI_ 0 0 0 REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|108|2|anti-sense REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|108|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.8011474609375 2 516.299853 1030.58515 0.42869 0.00022133 -1.0965 -0.0005661 -0.66777 -0.00034477 516.2993581320072 59.272 0.58805 62.759 62.464 63.052 3.4868 61 39 2 0 0 0 0.40174 1 13045 13045 7.9102 0 1 181770 + 31076 27875 19734 19745 35762 35762 0.07108422833653094 PLVYIPVF 8 Unmodified _PLVYIPVF_ 0 0 0 L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|196|1|anti-sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|196|1|anti-sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|196|1|anti-sense MSMS UPN47_class_I_Rep_1 2 474.2823486328125 2 474.283672 946.552791 NaN NaN NaN NaN NaN NaN NaN 108.98 1 112.58 112.08 113.08 3.6046 0 0 0 0.39167 1 26848 26848 11.114 3.2043 1 31077 14408 19735 19746 35763 35763 0.07737635430657974 PLWAFKFATS 10 Unmodified _PLWAFKFATS_ 0 0 0 MER102b_dup3120|chr16:23838129-23838426:+|1.2357548846056012|0.0061828328945316|7.64|151.0|9|2|sense MER102b_dup3120|chr16:23838129-23838426:+|1.2357548846056012|0.0061828328945316|7.64|151.0|9|2|sense MER102b_dup3120|chr16:23838129-23838426:+|1.2357548846056012|0.0061828328945316|7.64|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 584.3146362304688 2 584.313492 1166.61243 NaN NaN NaN NaN NaN NaN NaN 66.522 1 66.522 66.022 67.022 0 0 0 0 0.53105 1 15098 15098 2.9952 0 1 31078 15760 19736 19747 35764 35764 0.035789063740367055 PLWDPTFF 8 Unmodified _PLWDPTFF_ 0 0 0 ENST00000602307.5_1_3:47454690-47454903:+|nuORF ENST00000602307.5_1_3:47454690-47454903:+|nuORF ENST00000602307.5_1_3:47454690-47454903:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 512.2817993164062 2 511.752736 1021.49092 0.30604 0.00015662 2.6769 0.0013699 2.9829 0.0015265 511.75461676079186 81.07 0.064415 81.07 81.036 81.101 0 7 5 2 0 0 0 0.72333 1 19133 19133 8.5933 0.68312 1 36202 31079 7664 19737 19748 35765 35765 -0.018967159884709872 PLWEMVEF 8 Unmodified _PLWEMVEF_ 0 0 0 L1MB1_dup411|chr2:32373569-32374200:+|3.265474788159745|0.0162863100848239|7.65|151.0|21|3|sense L1MB1_dup411|chr2:32373569-32374200:+|3.265474788159745|0.0162863100848239|7.65|151.0|21|3|sense L1MB1_dup411|chr2:32373569-32374200:+|3.265474788159745|0.0162863100848239|7.65|151.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 525.7664184570312 2 525.751879 1049.4892 NaN NaN NaN NaN NaN NaN NaN 25.033 1 28.782 28.282 29.282 3.7495 0 0 0 0.40604 1 3371 3371 2.5775 0.27475 1 31080 10183 19738 19749 35766 35766 -0.03356093068737209 PLWFCGNYY 9 Unmodified _PLWFCGNYY_ 0 0 0 ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.7562255859375 2 581.754953 1161.49535 0.35149 0.00020448 1.8098 0.0010529 2.1613 0.0012574 581.755936760283 65.2 0.41605 68.555 68.376 68.792 3.3557 38 26 2 0 0 0 0.40174 1 15506 15506 7.9102 1.5561 1 82100 31081 7755 19739 19750 35767 35767 -0.07893574837203232 PLWFCGNYY 9 Unmodified _PLWFCGNYY_ 0 0 0 ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 581.754953 1161.49535 0.37103 0.00021585 1.7719 0.0010308 2.143 0.0012467 582.2571501208547 65.534 0.086624 68.79 68.728 68.814 3.2556 0.096449 -5.1406E-05 NaN 7.9102 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 100790 31082 7755 19739 19750 -0.07893574837203232 PLWFCGNYY 9 Unmodified _PLWFCGNYY_ 0 0 0 ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|73|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 581.754953 1161.49535 0.43633 0.00025384 1.8262 0.0010624 2.2626 0.0013163 581.7560198504704 65.556 0.46617 68.735 68.423 68.889 3.1795 0.041595 1.1768E-05 NaN 7.9102 42 33 2 NaN NaN NaN NaN 0 NaN NaN 0 77781 31083 7755 19739 19750 -0.07893574837203232 PLWFRRLEVLV 11 Unmodified _PLWFRRLEVLV_ 0 0 0 HERVH-int_dup5578|chr19:52628195-52631191:+|1.612781811949883|0.3794519770853735|2.09|151.0|114|2|anti-sense HERVH-int_dup5578|chr19:52628195-52631191:+|1.612781811949883|0.3794519770853735|2.09|151.0|114|2|anti-sense HERVH-int_dup5578|chr19:52628195-52631191:+|1.612781811949883|0.3794519770853735|2.09|151.0|114|2|anti-sense MSMS UPN48_class_I_Rep_2 6 476.62371826171875 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 104.42 1 108.12 107.62 108.62 3.6991 0 0 0 0.38417 1 24716 24716 2.8433 0.4085 1 31084 8166 19740 19751 35768 35768 0.1485416844463998 PLWLQTRPL 9 Unmodified _PLWLQTRPL_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.0019864 1.117E-06 -0.16149 -9.0812E-05 -0.1595 -8.9694E-05 562.3344155837387 21.769 0.078899 21.769 21.738 21.817 0 16 8 3 0 0 0 0.50015 1 2480 2480 0.6015 0 1 108700 31085 7042 19741 19752 35769 35769 0.09854301502264207 PLWLQTRPL 9 Unmodified _PLWLQTRPL_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.13114 7.3743E-05 0.025157 1.4146E-05 0.15629 8.789E-05 562.3346741304808 27.568 0.18438 27.568 27.537 27.721 0 28 12 3 0 0 0 0.50015 1 4116 4116 0.6015 0 1 1448200 31086 7042 19741 19752 35770 35770 0.09854301502264207 PLWLQTRPL 9 Unmodified _PLWLQTRPL_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.16123 9.0666E-05 0.11519 6.4777E-05 0.27643 0.00015544 562.3346836166141 28.976 0.17012 28.976 28.84 29.01 0 24 11 4 0 0 0 0.50015 1 4519 4519 0.6015 0 1 382880 31087 7042 19741 19752 35771 35771 0.09854301502264207 PLWLQTRPL 9 Unmodified _PLWLQTRPL_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3349609375 2 562.334759 1122.65496 0.32595 0.00018329 -0.41161 -0.00023146 -0.085667 -4.8174E-05 562.3343120615642 36.431 0.10691 36.431 36.378 36.485 0 12 8 2 0 0 0 0.50015 1 6738 6738 0.6015 0 1 169150 31088 7042 19741 19752 35772 35772 0.09854301502264207 PLWLQTRPL 9 Unmodified _PLWLQTRPL_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 33.808 1 33.808 33.308 34.308 0 0 0 0 0.40038 1 5959 5959 0.6015 0 1 31089 7042 19741 19752 35773 35773 0.09854301502264207 PLWLQTRPL 9 Unmodified _PLWLQTRPL_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MSMS UPN47_class_I_Rep_3 4 562.333251953125 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 110.48 1 114.01 113.51 114.51 3.529 0 0 0 0.40038 1 27115 27115 0.6015 0 1 31090 7042 19741 19752 35774 35774 0.09854301502264207 PLWLVAPLPVF 11 Unmodified _PLWLVAPLPVF_ 0 0 0 MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.37890625 2 626.378635 1250.74272 0.55604 0.00034829 1.0654 0.00066735 1.6215 0.0010156 626.3791235101443 99.105 0.16804 102.9 102.84 103.01 3.7926 29 22 2 0 0 0 0.68024 1 24511 24511 1.4819 0.28856 1 289280 31091 16104 19742 19753 35775 35775 0.12737502373011012 PLWLVAPLPVF 11 Unmodified _PLWLVAPLPVF_ 0 0 0 MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MER52C_dup21|chr1:246147462-246148598:+|1.0930191654218702|0.0128847107350229|6.41|150.0|28|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 626.378635 1250.74272 0.68668 0.00043012 1.9632 0.0012297 2.6498 0.0016598 626.3799165929236 102.75 0.14354 102.75 102.71 102.85 0 -0.073526 0.00084151 NaN 1.4819 19 17 2 NaN NaN NaN NaN 0 NaN NaN 0 341430 31092 16104 19742 19753 0.12737502373011012 PLWRLFPRNL 10 Unmodified _PLWRLFPRNL_ 0 0 0 REV__L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|117|1|anti-sense REV__L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|117|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 438.1336364746094 3 437.927663 1310.76116 0.11446 5.0125E-05 0.021992 9.631E-06 0.13645 5.9756E-05 437.9277413840591 47.105 0.10505 47.105 47.061 47.166 0 14 10 2 0 0 0 0.84575 1 9731 9731 0.15932 0 1 77252 + 31093 25033 19743 19754 35776 35776 0.11821057067618312 PLWWFFYF 8 Unmodified _PLWWFFYF_ 0 0 0 REV__L1MCa_dup5747|chr13:46027671-46029424:+|1.2312918289073216|0.0577094080141094|4.42|151.0|122|3|anti-sense REV__L1MCa_dup5747|chr13:46027671-46029424:+|1.2312918289073216|0.0577094080141094|4.42|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_2 6 603.295654296875 2 603.294571 1204.57459 NaN NaN NaN NaN NaN NaN NaN 54.232 1 57.814 57.314 58.314 3.5817 0 0 0 0.40738 1 11443 11443 0.79363 0.19213 1 + 31094 27213 19744 19755 35777 35777 -0.019515598207817675 PLWWSWLKS 9 Unmodified _PLWWSWLKS_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|420|3|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|420|3|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|420|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 601.8212280273438 2 601.821484 1201.62842 0.42302 0.00025459 -0.4128 -0.00024843 0.010225 6.1538E-06 601.8211700269622 50.584 0.60819 54.108 53.929 54.537 3.5246 62 39 2 0 0 0 0.48643 1 10402 10402 2.0598 0.21551 1 200530 31095 9426 19745 19756 35778 35778 0.03566612610916309 PLWWSWLKS 9 Unmodified _PLWWSWLKS_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|420|3|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|420|3|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|420|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 601.821484 1201.62842 0.42936 0.0002584 0.72998 0.00043932 1.1593 0.00069771 601.8223840504974 50.481 0.095448 54.102 54.021 54.117 3.621 -0.0030972 0.0012796 NaN 2.0598 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 78557 31096 9426 19745 19756 0.03566612610916309 PLYPKRRG 8 Unmodified _PLYPKRRG_ 0 0 0 REV__THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|17|2|anti-sense REV__THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|17|2|anti-sense MSMS UPN47_class_I_Rep_3 4 493.8077392578125 2 493.798343 985.582134 NaN NaN NaN NaN NaN NaN NaN 60.566 1 63.731 63.231 64.231 3.1651 0 0 0 0.4032 1 14232 14232 6.3541 0 1 + 31097 32225 19746 19757 35779 35779 0.08876592499518665 PLYQLLRG 8 Unmodified _PLYQLLRG_ 0 0 0 REV__ENSG00000120457|ENST00000529694|KCNJ5 REV__ENSG00000120457|ENST00000529694|KCNJ5 MULTI-MSMS UPN47_class_I_Rep_3 4 480.2870788574219 2 480.287277 958.560001 -0.17992 -8.6412E-05 0.051516 2.4742E-05 -0.1284 -6.167E-05 480.28726599963414 44.115 0.85936 47.359 47.076 47.936 3.2441 86 48 2 0 0 0 0.82752 1 9386 9386 0.79363 0 1 119150 + 31098 18704 19747 19758 35780 35780 0.07906368031103739 PMELPLWDV 9 Unmodified _PMELPLWDV_ 0 0 0 REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|132|2|anti-sense REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|132|2|anti-sense MSMS UPN47_class_I_Rep_3 4 550.2791137695312 2 550.27826 1098.54197 NaN NaN NaN NaN NaN NaN NaN 91.433 1 94.834 94.334 95.334 3.401 0 0 0 0.38478 1 22870 22870 4.3292 0.38484 1 + 31099 24122 19748 19759 35781 35781 -0.003361350059549295 PMEWEKLFA 9 Unmodified _PMEWEKLFA_ 0 0 0 L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|56|3|sense L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|56|3|sense L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|56|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 575.78466796875 2 575.78371 1149.55287 0.55711 0.00032078 -0.13188 -7.5936E-05 0.42523 0.00024484 575.7839090862856 61.904 0.66643 65.371 65.141 65.808 3.4678 84 59 2 0 0 0 0.12444 1 13916 13916 2.0598 0 1 194460 31100 10067 19749 19760 35782 35782 -0.0159273263166142 PMEWEKLFA 9 Unmodified _PMEWEKLFA_ 0 0 0 L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|56|3|sense L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|56|3|sense L1MA8_dup8139|chr12:93693798-93695621:+|1.2012800644239143|0.0351354961997742|5.1|151.0|56|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 575.78371 1149.55287 0.53291 0.00030684 -0.18728 -0.00010783 0.34563 0.00019901 575.7838211196353 62.012 1.2505 65.486 65.015 66.266 3.4738 0.057216 -3.075E-05 NaN 2.0598 115 94 2 NaN NaN NaN NaN 0 NaN NaN 0 187540 31101 10067 19749 19760 -0.0159273263166142 PMFIPAIL 8 Unmodified _PMFIPAIL_ 0 0 0 L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense MSMS UPN47_class_I_Rep_3 4 451.2628479003906 2 451.264425 900.514297 NaN NaN NaN NaN NaN NaN NaN 29.333 1 32.657 32.157 33.157 3.3235 0 0 0 0.40738 1 4727 4727 0.79363 0 1 31102 10178 19750 19761 35783 35783 0.0600600652447838 PMFIPAIL 8 Unmodified _PMFIPAIL_ 0 0 0 L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 451.2628173828125 2 451.264425 900.514297 NaN NaN NaN NaN NaN NaN NaN 118.08 1 121.7 121.2 122.2 3.6215 0 0 0 0.40738 1 28792 28792 0.79363 0 1 31103 10178 19750 19761 35784 35784 0.0600600652447838 PMFIPAIL 8 Unmodified _PMFIPAIL_ 0 0 0 L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 451.2629699707031 2 451.264425 900.514297 NaN NaN NaN NaN NaN NaN NaN 118.46 1 122.08 121.58 122.58 3.6189 0 0 0 0.40738 1 28892 28892 0.79363 0 1 31104 10178 19750 19761 35785 35785 0.0600600652447838 PMFIPAIL 8 Unmodified _PMFIPAIL_ 0 0 0 L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense L1MB1_dup3565|chrX:107074519-107076035:+|2.0118214207554126|0.1310432083833659|3.94|150.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 451.2628479003906 2 451.264425 900.514297 NaN NaN NaN NaN NaN NaN NaN 119.6 1 123.22 122.72 123.72 3.6189 0 0 0 0.40738 1 29195 29195 0.79363 0 1 31105 10178 19750 19761 35786 35786 0.0600600652447838 PMFKKTKT 8 Unmodified _PMFKKTKT_ 0 0 0 L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|49|2|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|49|2|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|49|2|sense MSMS UPN47_class_I_Rep_2 3 491.20703125 2 490.783513 979.552473 NaN NaN NaN NaN NaN NaN NaN 29.807 1 33.3 32.8 33.8 3.4923 0 0 0 0.40738 1 4825 4825 0.79363 0.10326 1 31106 10834 19751 19762 35787 35787 0.061878924391749024 PMFPKIAV 8 Unmodified _PMFPKIAV_ 0 0 0 MER11A_dup691|chr11:14684180-14685293:-|1.3580908134851146|0.0163669177211014|6.37|151.0|52|1|anti-sense MER11A_dup691|chr11:14684180-14685293:-|1.3580908134851146|0.0163669177211014|6.37|151.0|52|1|anti-sense MER11A_dup691|chr11:14684180-14685293:-|1.3580908134851146|0.0163669177211014|6.37|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_3 4 451.7632141113281 2 451.762049 901.509546 NaN NaN NaN NaN NaN NaN NaN 70.52 1 73.731 73.231 74.231 3.2113 0 0 0 0.39624 1 17255 17255 9.3474 0 1 31107 15785 19752 19763 35788 35788 0.05485122381730889 PMFRLPRLPLN 11 Unmodified _PMFRLPRLPLN_ 0 0 0 L1MC5a_dup8936|chr9:85592990-85593804:+|1.6325918287616028|0.1300887733036051|3.65|151.0|36|1|anti-sense L1MC5a_dup8936|chr9:85592990-85593804:+|1.6325918287616028|0.1300887733036051|3.65|151.0|36|1|anti-sense L1MC5a_dup8936|chr9:85592990-85593804:+|1.6325918287616028|0.1300887733036051|3.65|151.0|36|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 451.9326477050781 3 451.932309 1352.7751 0.19031 8.6008E-05 0.79724 0.0003603 0.98755 0.0004463 451.93266308084037 95.139 0.1843 95.139 95.003 95.187 0 36 21 3 0 0 0 0.6724 1 23069 23069 1.2148 0 1 317380 31108 11770 19753 19764 35789 35789 0.11281966504407137 PMGHSCLH 8 Unmodified _PMGHSCLH_ 0 0 0 REV__ENSG00000125910.6,S1PR4,chr19,+,I1.1,3172445,3178768|31|19.58|1|intron REV__ENSG00000125910.6,S1PR4,chr19,+,I1.1,3172445,3178768|31|19.58|1|intron MSMS UPN47_class_I_Rep_2 3 440.7992858886719 2 441.191465 880.368377 NaN NaN NaN NaN NaN NaN NaN 97.969 1 101.45 100.95 101.95 3.4836 0 0 0 0.40738 1 24030 24030 0.79363 0 1 + 31109 18848 19754 19765 35790 35790 -0.07659199263207483 PMGHSCLH 8 Unmodified _PMGHSCLH_ 0 0 0 REV__ENSG00000125910.6,S1PR4,chr19,+,I1.1,3172445,3178768|31|19.58|1|intron REV__ENSG00000125910.6,S1PR4,chr19,+,I1.1,3172445,3178768|31|19.58|1|intron MSMS UPN47_class_I_Rep_3 4 441.1914978027344 2 441.191465 880.368377 NaN NaN NaN NaN NaN NaN NaN 92.706 1 96.109 95.609 96.609 3.4034 0 0 0 0.40738 1 23137 23137 0.79363 0 1 + 31110 18848 19754 19765 35791 35791 -0.07659199263207483 PMGSGRCGQRS 11 Unmodified _PMGSGRCGQRS_ 0 0 0 REV__ENST00000475146.1_1_20:34252448-34252655:-|nuORF REV__ENST00000475146.1_1_20:34252448-34252655:-|nuORF MSMS UPN47_class_I_Rep_3 4 568.2588500976562 2 568.258399 1134.50225 NaN NaN NaN NaN NaN NaN NaN 25.723 1 29.071 28.571 29.571 3.3478 0 0 0 0.38417 1 3659 3659 1.1933 0.39971 1 + 31111 22530 19755 19766 35792 35792 -0.059625852283033964 PMHCSSECFPL 11 Unmodified _PMHCSSECFPL_ 0 0 0 REV__ENSG00000178394|ENST00000323865|HTR1A REV__ENSG00000178394|ENST00000323865|HTR1A MSMS UPN48_class_I_Rep_1 5 625.7525024414062 2 625.753769 1249.49299 NaN NaN NaN NaN NaN NaN NaN 46.634 1 50.153 49.653 50.653 3.5192 0 0 0 0.38417 1 9127 9127 1.3295 0.13619 1 + 31112 20651 19756 19767 35793 35793 -0.12178114628841286 PMHIFYRF 8 Unmodified _PMHIFYRF_ 0 0 0 REV__nc|nan|Q8IXR9-2|C12orf56 REV__nc|nan|Q8IXR9-2|C12orf56 MSMS UPN47_class_I_Rep_1 2 555.782958984375 2 555.781305 1109.54806 NaN NaN NaN NaN NaN NaN NaN 46.574 1 50.274 49.774 50.774 3.6999 0 0 0 0.40604 1 9891 9891 2.5775 0.27475 1 + 31113 20853 19757 19768 35794 35794 -0.0023357198376743327 PMHIVIYC 8 Unmodified _PMHIVIYC_ 0 0 0 REV__L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|182|2|anti-sense REV__L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|182|2|anti-sense MSMS UPN47_class_I_Rep_2 3 488.2432861328125 2 488.243166 974.47178 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.08 117.58 118.58 3.5039 0 0 0 0.40581 1 27905 27905 2.8892 0 1 + 31114 30173 19758 19769 35795 35795 -0.016477118753982722 PMHPVWPLL 9 Unmodified _PMHPVWPLL_ 0 0 0 REV__L1PA12_dup912|chr9:27073160-27075279:-|1.1146772451023463|0.321966809920392|1.79|151.0|38|3|sense REV__L1PA12_dup912|chr9:27073160-27075279:-|1.1146772451023463|0.321966809920392|1.79|151.0|38|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 545.8275146484375 2 545.29933 1088.58411 0.48799 0.0002661 2.2444 0.0012239 2.7324 0.00149 545.3003653387166 68.955 0.36932 72.476 72.277 72.647 3.5216 33 22 2 0 0 0 0.10758 1 15899 15899 14.582 7.2925 1 91665 + 31115 29077 19759 19770 35796 35796 0.04335885193108879 PMHWFTRE 8 Unmodified _PMHWFTRE_ 0 0 0 REV__L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|28|2|sense REV__L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|28|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 552.260009765625 2 552.258194 1102.50183 0.53211 0.00029386 1.9445 0.0010739 2.4766 0.0013677 552.2593383617207 74.932 0.031525 78.422 78.405 78.436 3.49 5 3 2 0 0 0 0.72333 1 17732 17732 2.3027 0.24298 1 50423 + 31116 25904 19760 19771 35797 35797 -0.04531636885826629 PMHWFTRE 8 Unmodified _PMHWFTRE_ 0 0 0 REV__L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|28|2|sense REV__L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|28|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 552.258194 1102.50183 0.4369 0.00024128 -0.043204 -2.386E-05 0.3937 0.00021742 552.7590404416712 75.027 0.040718 78.593 78.573 78.614 3.5658 0.085434 -0.0010898 NaN 2.3027 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 25046 + 31117 25904 19760 19771 -0.04531636885826629 PMHWHRRW 8 Unmodified _PMHWHRRW_ 0 0 0 REV__ENST00000295314.8_1_1:151144812-151146031:-|nuORF REV__ENST00000295314.8_1_1:151144812-151146031:-|nuORF MSMS UPN47_class_I_Rep_2 3 603.2982788085938 2 603.298519 1204.58248 NaN NaN NaN NaN NaN NaN NaN 26.512 1 30.007 29.507 30.507 3.4945 0 0 0 0.40738 1 3847 3847 0.79363 0.10326 1 + 31118 21646 19761 19772 35798 35798 -0.011623110522805291 PMIILPFI 8 Unmodified _PMIILPFI_ 0 0 0 REV__L1MEc_dup9745|chr9:5157039-5157671:+|1.397612854702026|0.0038895411644489|8.49|151.0|42|3|anti-sense REV__L1MEc_dup9745|chr9:5157039-5157671:+|1.397612854702026|0.0038895411644489|8.49|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_2 3 472.2877502441406 2 472.2879 942.561247 NaN NaN NaN NaN NaN NaN NaN 90.89 1 94.351 93.851 94.851 3.4613 0 0 0 0.40738 1 22526 22526 0.79363 0 1 + 31119 28499 19762 19773 35799 35799 0.08766866075620783 PMKALGKK 8 Unmodified _PMKALGKK_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|24|1|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|24|1|sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|24|1|sense MSMS UPN46_class_I_Rep_3 1 436.7747497558594 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 86.085 1 86.085 85.585 86.585 0 0 0 0 0.40746 1 20570 20570 0.69038 0 1 31120 16159 19763 19774 35800 35800 0.09043927130301199 PMKHYLSI 8 Unmodified _PMKHYLSI_ 0 0 0 L1MB4_dup1849|chr3:172048481-172049135:+|3.1869902394537344|0.0544374282818208|5.87|151.0|27|1|anti-sense L1MB4_dup1849|chr3:172048481-172049135:+|3.1869902394537344|0.0544374282818208|5.87|151.0|27|1|anti-sense L1MB4_dup1849|chr3:172048481-172049135:+|3.1869902394537344|0.0544374282818208|5.87|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.76849365234375 2 494.767863 987.521173 NaN NaN NaN NaN NaN NaN NaN 33.279 1 36.719 36.219 37.219 3.4398 0 0 0 0.40625 1 5875 5875 2.3027 0 1 31121 10484 19764 19775 35801 35801 0.026913194050735 PMKIHLIS 8 Unmodified _PMKIHLIS_ 0 0 0 ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF ENST00000503773.6_1_5:55236912-55256289:-|nuORF MSMS UPN47_class_I_Rep_3 4 469.7788391113281 2 469.778231 937.541908 NaN NaN NaN NaN NaN NaN NaN 84.068 1 87.418 86.918 87.918 3.35 0 0 0 0.40604 1 21094 21094 2.5775 0 1 31122 7142 19765 19776 35802 35802 0.07063909784733369 PMKKKLELH 9 Unmodified _PMKKKLELH_ 0 0 0 REV__Charlie1a_dup4854|chr15:68063690-68064919:+|1.0620961130601312|0.0223673197114571|5.57|151.0|3|1|sense REV__Charlie1a_dup4854|chr15:68063690-68064919:+|1.0620961130601312|0.0223673197114571|5.57|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 562.3349609375 2 562.336444 1122.65834 NaN NaN NaN NaN NaN NaN NaN 108.98 1 112.52 112.02 113.02 3.5333 0 0 0 0.25702 1 26513 26513 13.042 0.80181 1 + 31123 17334 19766 19777 35803 35803 0.10191228284611498 PMKNLVKI 8 Unmodified _PMKNLVKI_ 0 0 0 L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|34|3|sense L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|34|3|sense L1MEc_dup1941|chr2:23852935-23853963:+|2.0810439724387355|0.0367041570585666|5.83|151.0|34|3|sense MSMS UPN48_class_I_Rep_2 6 471.79473876953125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 115.08 1 118.74 118.24 119.24 3.6616 0 0 0 0.40746 1 27533 27533 0.69038 0 1 31124 13076 19767 19778 35804 35804 0.10008482818830089 PMKRWKLWKH 10 Unmodified _PMKRWKLWKH_ 0 0 0 ENST00000367240.6_1_1:203029522-203032974:+|nuORF ENST00000367240.6_1_1:203029522-203032974:+|nuORF ENST00000367240.6_1_1:203029522-203032974:+|nuORF MSMS UPN48_class_I_Rep_1 5 470.6065979003906 3 470.604415 1408.79141 NaN NaN NaN NaN NaN NaN NaN 54.305 1 57.82 57.32 58.32 3.5143 0 0 0 0.53105 1 11485 11485 0.77653 0.27058 1 31125 6349 19768 19779 35805 35805 0.10337092461122666 PMLLLFAL 8 Unmodified _PMLLLFAL_ 0 0 0 ENST00000316423.10_1_4:39505568-39506095:-|nuORF ENST00000316423.10_1_4:39505568-39506095:-|nuORF ENST00000316423.10_1_4:39505568-39506095:-|nuORF MSMS UPN46_class_I_Rep_3 1 459.2796936035156 2 459.280075 916.545597 NaN NaN NaN NaN NaN NaN NaN 78.899 1 78.899 78.399 79.399 0 0 0 0 0.40738 1 18505 18505 0.79363 0 1 31126 6135 19769 19780 35806 35806 0.08398579558581787 PMLLPLFV 8 Unmodified _PMLLPLFV_ 0 0 0 REV__HUERS-P1-int_dup254|chrX:9665540-9667030:+|1.40546153127713|0.1105229932495075|3.67|151.0|2|1|sense REV__HUERS-P1-int_dup254|chrX:9665540-9667030:+|1.40546153127713|0.1105229932495075|3.67|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.27996826171875 2 465.280075 928.545597 0.21977 0.00010226 -0.50739 -0.00023608 -0.28762 -0.00013382 465.27973330162007 83.26 0.75526 83.26 83.141 83.897 0 104 76 3 0 0 0 0.82752 1 19879 19879 0.79363 0 1 363750 + 31127 23970 19770 19781 35807 35807 0.07846579558577105 PMLLSMYI 8 Unmodified _PMLLSMYI_ 0 0 0 REV__L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|57|3|anti-sense REV__L1MB5_dup7234|chr15:44385859-44386588:-|1.123066825965674|0.0279539958389147|5.33|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_3 7 484.0229797363281 2 484.2532 966.491847 NaN NaN NaN NaN NaN NaN NaN 29.783 1 33.512 33.012 34.012 3.7286 0 0 0 0.40738 1 4216 4216 0.79363 0 1 + 31128 26098 19771 19782 35808 35808 0.007260390645569714 PMLPIYKL 8 Unmodified _PMLPIYKL_ 0 0 0 REV__L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|152|2|anti-sense REV__L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|152|2|anti-sense MSMS UPN48_class_I_Rep_3 7 487.7908935546875 2 487.790807 973.56706 NaN NaN NaN NaN NaN NaN NaN 76.28 1 79.863 79.363 80.363 3.5831 0 0 0 0.40738 1 17961 17961 0.79363 0 1 + 31129 29279 19772 19783 35809 35809 0.07921964587285402 PMLQIYGGDKS 11 Unmodified _PMLQIYGGDKS_ 0 0 0 REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF REV__ENST00000610253.5_1_11:108042863-108061204:-|nuORF MSMS UPN47_class_I_Rep_1 2 604.8023681640625 2 604.802631 1207.59071 NaN NaN NaN NaN NaN NaN NaN 66.735 1 70.093 69.593 70.593 3.3576 0 0 0 0.38417 1 16005 16005 2.9952 0.26005 1 + 31130 19612 19773 19784 35810 35810 -0.0047826643683492875 PMLRVSNG 8 Unmodified _PMLRVSNG_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MSMS UPN46_class_I_Rep_3 1 437.235595703125 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 52.843 1 52.843 52.343 53.343 0 0 0 0 0.40604 1 11326 11326 2.5775 0 1 + 31131 19525 19774 19785 35811 35811 0.012492891941178641 PMLVHAARFLY 11 Unmodified _PMLVHAARFLY_ 0 0 0 REV__nc|ENSG00000076685|P49902-2|NT5C2 REV__nc|ENSG00000076685|P49902-2|NT5C2 MULTI-SECPEP UPN48_class_I_Rep_1 5 439.2708740234375 3 439.909392 1316.70635 0.002265 9.9639E-07 -0.018558 -8.164E-06 -0.016293 -7.1676E-06 439.90935637355983 37.742 0.61501 41.247 40.913 41.528 3.5052 82 63 2 0 0 0 22.551 1 6411 6411 1.4551 0 1 190420 + 31132 17869 19775 19786 35812 35812 0.06066302204681051 PMNRPEPR 8 Unmodified _PMNRPEPR_ 0 0 0 REV__ENST00000304698.9_1_2:187558820-187558961:+|nuORF REV__ENST00000304698.9_1_2:187558820-187558961:+|nuORF MSMS UPN46_class_I_Rep_3 1 498.749267578125 2 498.755818 995.497083 NaN NaN NaN NaN NaN NaN NaN 118.02 1 118.02 117.52 118.52 0 0 0 0 0.40643 1 29278 29278 2.0598 0 1 + 31133 21683 19776 19787 35813 35813 -0.0008452102860019295 PMPIKKTK 8 Unmodified _PMPIKKTK_ 0 0 0 ENST00000549913.6_1_12:113306162-113306792:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A ENST00000549913.6_1_12:113306162-113306792:+|nuORF ENST00000549913.6_1_12:113306162-113306792:+|nuORF MSMS UPN48_class_I_Rep_3 7 471.7947998046875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 93.426 1 97.318 96.818 97.818 3.8914 0 0 0 0.40738 1 22139 22139 0.79363 0.10326 1 31134 1333 19777 19788 35814 35814 0.1000848281881872 PMPLSLKK 8 Unmodified _PMPLSLKK_ 0 0 0 REV__ENSG00000100196|ENST00000216014|KDELR3 REV__ENSG00000100196|ENST00000216014|KDELR3 MSMS UPN47_class_I_Rep_1 2 457.2826232910156 2 457.280606 912.546659 NaN NaN NaN NaN NaN NaN NaN 92.071 1 95.792 95.292 96.292 3.7209 0 0 0 0.40738 1 22957 22957 0.79363 0 1 + 31135 18094 19778 19789 35815 35815 0.08688793927478855 PMPPRPPL 8 Unmodified _PMPPRPPL_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MSMS UPN47_class_I_Rep_3 4 452.75677490234375 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 18.608 1 21.962 21.462 22.462 3.3545 0 0 0 0.40738 1 1579 1579 0.79363 0 1 31136 4713 19779 19790 35816 35816 0.04443354096190433 PMQCNPCY 8 Unmodified _PMQCNPCY_ 0 0 0 REV__ENSG00000198924|ENST00000361384|DCLRE1A REV__ENSG00000198924|ENST00000361384|DCLRE1A MSMS UPN47_class_I_Rep_1 2 477.7972717285156 2 478.177166 954.339779 NaN NaN NaN NaN NaN NaN NaN 90.48 1 94.17 93.67 94.67 3.6899 0 0 0 0.40604 1 22605 22605 2.5775 0 1 + 31137 21165 19780 19791 35817 35817 -0.13921684954652846 PMRILPLC 8 Unmodified _PMRILPLC_ 0 0 0 REV__MLT1B_dup12403|chr11:66108082-66108438:-|1.1354075963702852|0.0072002885066348|7.3|151.0|20|2|anti-sense REV__MLT1B_dup12403|chr11:66108082-66108438:-|1.1354075963702852|0.0072002885066348|7.3|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.76580810546875 2 471.766809 941.519064 NaN NaN NaN NaN NaN NaN NaN 28.253 1 32.019 31.519 32.519 3.7662 0 0 0 0.40604 1 4325 4325 2.5775 0 1 + 31138 31616 19781 19792 35818 35818 0.04596567395606144 PMRLLRSP 8 Unmodified _PMRLLRSP_ 0 0 0 REV__L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense REV__L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.2896728515625 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 57.213 1 60.727 60.227 61.227 3.5142 0 0 0 0.40472 1 12356 12356 4.3292 1.7518 1 + 31139 30398 19782 19793 35819 35819 0.07341830390532778 PMRPFPLH 8 Unmodified _PMRPFPLH_ 0 0 0 REV__LTR16C_dup5343|chr18:21669861-21670317:-|2.34136911065826|0.2018300758593367|3.54|151.0|5|2|sense REV__LTR16C_dup5343|chr18:21669861-21670317:-|2.34136911065826|0.2018300758593367|3.54|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 497.7672119140625 2 497.768197 993.521842 NaN NaN NaN NaN NaN NaN NaN 40.917 1 44.668 44.168 45.168 3.7508 0 0 0 0.40625 1 7420 7420 2.3027 0 1 + 31140 30857 19783 19794 35820 35820 0.02482158844782134 PMRSLLLI 8 Unmodified _PMRSLLLI_ 0 0 0 REV__L1M4c_dup655|chr3:128754003-128755594:+|9.264740588306854|0.0416564957790087|7.8|151.0|88|2|anti-sense REV__L1M4c_dup655|chr3:128754003-128755594:+|9.264740588306854|0.0416564957790087|7.8|151.0|88|2|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7958679199219 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 107.17 1 110.71 110.21 111.21 3.5382 0 0 0 0.40581 1 26165 26165 2.8892 0 1 + 31141 24605 19784 19795 35821 35821 0.10008482818830089 PMSLGHAP 8 Unmodified _PMSLGHAP_ 0 0 0 ENSG00000123999|ENST00000243786|INHA ENSG00000123999|ENST00000243786|INHA ENSG00000123999|ENST00000243786|INHA MULTI-SECPEP UPN48_class_I_Rep_1 5 405.22711181640625 2 405.202356 808.390159 -0.14471 -5.8638E-05 2.717 0.0011009 2.5723 0.0010423 405.2033529028058 108.91 0.1267 112.54 112.49 112.61 3.6321 19 14 2 0 0 0 0.72333 1 26392 26392 0 0 1 1956400 31142 2440 19785 19796 35822 35822 -0.021700712429833402 PMSQRRENYG 10 Unmodified _PMSQRRENYG_ 0 0 0 nc|ENSG00000234414|P0DJD3-3|RBMY1A1;nc|ENSG00000226941|Q15415-2|RBMY1F;nc|ENSG00000244395|P0C7P1-2|RBMY1D;nc|ENSG00000234414|P0DJD3-2|RBMY1A1;nc|ENSG700|P0DJD4|RBMY1C;ENSG00000244395|ENST00000382680|RBMY1D;ENSG00000242875|ENST00000383020|RBMY1B;ENSG00000242389|ENST00000382659|RBMY1E;ENSG00000234414|ENST00000382707|RBMY1A1;ENSG00000226941|ENST00000250831|RBMY1J;ENSG00000169800|ENST00000303766|RBMY1F nc|ENSG00000234414|P0DJD3-3|RBMY1A1 nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MULTI-MSMS UPN47_class_I_Rep_1 2 619.2881469726562 2 619.290753 1236.56695 0.44484 0.00027549 -1.4565 -0.00090203 -1.0117 -0.00062654 619.2882934725876 61.299 1.7177 64.68 64.305 66.022 3.3815 418 122 6 0 0 0 0.55448 1 14644 14644 4.897 0 1 2777200 31143 4438 19786 19797 35823 35823 -0.04186687150649959 PMTEEYIFF 9 Unmodified _PMTEEYIFF_ 0 0 0 L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|28|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|28|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|28|1|sense MSMS UPN47_class_I_Rep_3 4 588.7689208984375 2 588.767726 1175.5209 NaN NaN NaN NaN NaN NaN NaN 39.059 1 42.297 41.797 42.797 3.238 0 0 0 0.39518 1 7674 7674 1.8442 0 1 31144 9539 19787 19798 35824 35824 -0.059841451054808203 PMVMKSFD 8 Unmodified _PMVMKSFD_ 0 0 0 REV__ENST00000537297.2_1_12:62688054-62696672:+|nuORF REV__ENST00000537297.2_1_12:62688054-62696672:+|nuORF MSMS UPN47_class_I_Rep_3 4 477.7269287109375 2 477.724806 953.43506 NaN NaN NaN NaN NaN NaN NaN 27.116 1 30.459 29.959 30.959 3.3422 0 0 0 0.40738 1 4071 4071 0.79363 0 1 + 31145 22897 19788 19799 35825 35825 -0.04352008491946435 PMYFYLPE 8 Unmodified _PMYFYLPE_ 0 0 0 L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|181|1|anti-sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|181|1|anti-sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|181|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.2529907226562 2 530.246429 1058.47831 NaN NaN NaN NaN NaN NaN NaN 30.014 1 33.649 33.149 34.149 3.6351 0 0 0 0.40738 1 4336 4336 0.79363 0 1 31146 10129 19789 19800 35826 35826 -0.048594954430427606 PMYVYYLVIS 10 Unmodified _PMYVYYLVIS_ 0 0 0 REV__L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|70|2|anti-sense REV__L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|70|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 416.2278137207031 3 416.550871 1246.63078 -1.2291 -0.00051199 0.57332 0.00023882 -0.65579 -0.00027317 416.551038119294 33.103 0.19196 36.39 36.253 36.444 3.2867 22 17 2 0 0 0 0.84575 1 5839 5839 0.15932 0 1 56276 + 31147 25394 19790 19801 35827 35827 0.01733280233725054 PMYVYYLVIS 10 Unmodified _PMYVYYLVIS_ 0 0 0 REV__L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|70|2|anti-sense REV__L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|70|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 416.550871 1246.63078 -0.98184 -0.00040899 0.50665 0.00021105 -0.47518 -0.00019794 416.55098778743053 33.026 0.091908 36.48 36.444 36.536 3.4547 0.045328 -6.4949E-05 NaN 0.15932 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 23765 + 31148 25394 19790 19801 0.01733280233725054 PNCCDEDNR 9 Unmodified _PNCCDEDNR_ 0 0 0 nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1 nc|ENSG00000089091|Q9NVP4-2|DZANK1 nc|ENSG00000089091|Q9NVP4-2|DZANK1 MSMS UPN46_class_I_Rep_3 1 533.1909790039062 2 533.189848 1064.36514 NaN NaN NaN NaN NaN NaN NaN 114.4 1 114.4 113.9 114.9 0 0 0 0 0.39598 1 28271 28271 1.6526 0.85899 1 31149 1329 19791 19802 35828 35828 -0.16446538898526342 PNCGDRICNLQ 11 Unmodified _PNCGDRICNLQ_ 0 0 0 REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|177|3|anti-sense REV__L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|177|3|anti-sense MSMS UPN48_class_I_Rep_3 7 616.7771606445312 2 616.779164 1231.54378 NaN NaN NaN NaN NaN NaN NaN 61.085 1 64.598 64.098 65.098 3.5128 0 0 0 0.38417 1 13470 13470 1.3295 0.72803 1 + 31150 24521 19792 19803 35829 35829 -0.0627344925962916 PNDGDTIHY 9 Unmodified _PNDGDTIHY_ 0 0 0 REV__nc|ENSG00000148541|Q8NE31-2|FAM13C REV__nc|ENSG00000148541|Q8NE31-2|FAM13C MULTI-MSMS UPN48_class_I_Rep_2 6 516.2257080078125 2 516.225071 1030.43559 0.2537 0.00013097 0.5163 0.00026653 0.77 0.0003975 516.2254866804219 46.435 1.2879 50.185 49.704 50.992 3.7494 233 90 4 0 0 0 0.35081 1 9160 9160 10.824 0.64053 1 1919000 + 31151 19594 19793 19804 35830 35830 -0.07841174246891569 PNECRYEDPI 10 Unmodified _PNECRYEDPI_ 0 0 0 REV__L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|162|3|sense REV__L1PA6_dup3447|chr9:121127657-121133788:-|6.4510489065481815|0.157555917361504|5.36|151.0|162|3|sense MSMS UPN47_class_I_Rep_2 3 618.2728271484375 2 618.271695 1234.52884 NaN NaN NaN NaN NaN NaN NaN 87.781 1 91.228 90.728 91.728 3.4471 0 0 0 0.53105 1 21822 21822 2.9952 0.69251 1 + 31152 29881 19794 19805 35831 35831 -0.07904617855979268 PNEDDEDDDEA 11 Unmodified _PNEDDEDDDEA_ 0 0 0 ENSG00000189431|ENST00000529419|RASSF10 ENSG00000189431|ENST00000529419|RASSF10 ENSG00000189431|ENST00000529419|RASSF10 MSMS UPN48_class_I_Rep_1 5 632.2103271484375 2 632.210209 1262.40586 NaN NaN NaN NaN NaN NaN NaN 119.06 1 122.68 122.18 123.18 3.6189 0 0 0 0.38417 1 29055 29055 0 0 1 31153 5278 19795 19806 35832 35832 -0.21484247564194447 PNFEVVHVY 9 Unmodified _PNFEVVHVY_ 0 0 0 REV__ENST00000548994.1_1_12:102509600-102512308:-|nuORF REV__ENST00000548994.1_1_12:102509600-102512308:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 552.279541015625 2 552.279649 1102.54475 0.34367 0.0001898 -0.15691 -8.6659E-05 0.18676 0.00010314 552.2797034967389 58.741 0.76004 62.264 61.889 62.649 3.5231 90 50 2 0 0 0 0.26948 1 12833 12833 15.847 0 1 225800 + 31154 17848 19796 19807 35833 35833 -0.0024254355676021078 PNFFFYPRIVH 11 Unmodified _PNFFFYPRIVH_ 0 0 0 REV__L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|71|1|anti-sense REV__L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|71|1|anti-sense MSMS UPN46_class_I_Rep_3 1 479.58526611328125 3 479.587307 1435.74009 NaN NaN NaN NaN NaN NaN NaN 106.94 1 106.94 106.44 107.44 0 0 0 0 0.38417 1 26086 26086 0.45452 0 1 + 31155 25508 19797 19808 35834 35834 0.03965046968073693 PNFTSQQPQQL 11 Unmodified _PNFTSQQPQQL_ 0 0 0 REV__ENSG00000188994.13,ZNF292,chr6,+,I10.1,87223937,87233324|32|8.3|1|intron REV__ENSG00000188994.13,ZNF292,chr6,+,I10.1,87223937,87233324|32|8.3|1|intron MSMS UPN48_class_I_Rep_2 6 644.3177490234375 2 644.320034 1286.62551 NaN NaN NaN NaN NaN NaN NaN 42.415 1 46.173 45.673 46.673 3.7579 0 0 0 0.38417 1 7851 7851 0.96228 0.36078 1 + 31156 20991 19798 19809 35835 35835 -0.006333073045425408 PNHFWNALL 9 Unmodified _PNHFWNALL_ 0 0 0 THE1B-int_dup3237|chr11:105036767-105038358:+|2.063025469349125|0.3639746685693534|2.5|151.0|68|1|anti-sense THE1B-int_dup3237|chr11:105036767-105038358:+|2.063025469349125|0.3639746685693534|2.5|151.0|68|1|anti-sense THE1B-int_dup3237|chr11:105036767-105038358:+|2.063025469349125|0.3639746685693534|2.5|151.0|68|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.290283203125 2 556.287808 1110.56106 0.42221 0.00023487 0.45909 0.00025539 0.8813 0.00049025 556.2880412144892 58.896 1.2878 62.314 61.903 63.191 3.4171 243 85 5 0 0 0 0.46869 1 13531 13531 3.9444 0.94915 1 1495300 31157 32922 19799 19810 35836 35836 0.01020582399974046 PNICRHEY 8 Unmodified _PNICRHEY_ 0 0 0 REV__L1M4c_dup514|chr3:31581523-31582286:-|1.2223774617345105|0.0216541964716304|5.82|151.0|28|3|sense REV__L1M4c_dup514|chr3:31581523-31582286:-|1.2223774617345105|0.0216541964716304|5.82|151.0|28|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.23828125 2 516.240001 1030.46545 -0.31286 -0.00016151 -1.4518 -0.00074947 -1.7646 -0.00091098 516.2392720066159 32.385 0.66321 35.84 35.591 36.254 3.4547 71 47 2 0 0 0 0.82752 1 5562 5562 2.0598 0.40713 1 62841 + 31158 24602 19800 19811 35837 35837 -0.04856513782556249 PNITIKIT 8 Unmodified _PNITIKIT_ 0 0 0 L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|37|1|sense;L1PA7_dup5427|chr6:97155321-97159601:-|2.081530715041847|0.0676919048516874|4.94|151.0|49|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|94|3|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|63|2|sense;L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|144|3|sense;L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|10|1|sense;L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|163|3|sense;L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|31|1|sense;L1P2_dup914|chrX:22000001-22005591:-|1.351841837087684|0.0281331290307267|5.59|149.0|31|1|sense;L1PA5_dup10297|chr17:634397-640538:-|4.0483048106553134|0.2126501754792122|4.25|151.0|83|2|sense;L1P2_dup72|chr1:148112815-148114201:+|1.1626952058160218|0.3334915888918826|1.8|150.0|25|2|sense;L1P2_dup68|chr1:146130564-146131950:+|2.436693700823368|0.1586829526948094|3.94|150.0|26|2|sense L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|37|1|sense L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|37|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.28155517578125 2 450.28166 898.548768 0.023795 1.0714E-05 -0.29819 -0.00013427 -0.2744 -0.00012356 450.2814065894679 41.813 1.2037 45.321 44.932 46.135 3.5079 279 118 3 0 0 0 0.82752 1 7798 7798 9.3474 0 1 1238200 31159 13504 19801 19812 35838 35838 0.09543545936935516 PNKKLIMF 8 Unmodified _PNKKLIMF_ 0 0 0 REV__L1M2_dup7319|chr13:49023921-49024823:+|1.1736243327572695|0.0355748245535934|5.04|150.0|22|2|sense REV__L1M2_dup7319|chr13:49023921-49024823:+|1.1736243327572695|0.0355748245535934|5.04|150.0|22|2|sense MSMS UPN47_class_I_Rep_1 2 495.7958984375 2 495.793881 989.573209 NaN NaN NaN NaN NaN NaN NaN 60.298 1 63.696 63.196 64.196 3.3982 0 0 0 0.40738 1 14064 14064 0.79363 0 1 + 31160 24228 19802 19813 35839 35839 0.07800482818834098 PNKLKDLL 8 Unmodified _PNKLKDLL_ 0 0 0 REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF REV__ENST00000585583.5_1_19:39088111-39100659:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 470.7948303222656 2 470.794935 939.575317 -0.52259 -0.00024603 -0.32399 -0.00015253 -0.84658 -0.00039856 470.7948347684566 38.082 1.3075 41.323 40.839 42.146 3.2414 237 98 3 0 0 0 0.82752 1 7518 7518 7.2892 0 1 397470 + 31161 18265 19803 19814 35840 35840 0.10311234828270699 PNKLKLDL 8 Unmodified _PNKLKLDL_ 0 0 0 REV__L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|120|2|sense REV__L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|120|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 470.7949523925781 2 470.794935 939.575317 -0.31312 -0.00014742 -0.32219 -0.00015168 -0.63531 -0.0002991 470.79479410062976 37.442 1.1937 41.108 40.687 41.881 3.6652 232 90 3 0 0 0 0.82752 1 7303 7303 3.5965 0 1 410080 + 31162 29591 19804 19815 35841 35841 0.10311234828270699 PNKLRLAA 8 Unmodified _PNKLRLAA_ 0 0 0 REV__ENSG00000198723|ENST00000361664|TEX45 REV__ENSG00000198723|ENST00000361664|TEX45 MSMS UPN48_class_I_Rep_1 5 441.7340393066406 2 441.779619 881.544686 NaN NaN NaN NaN NaN NaN NaN 41.764 1 45.272 44.772 45.772 3.5079 0 0 0 0.40746 1 7649 7649 0.69038 0 1 + 31163 21142 19805 19816 35842 35842 0.09917501233871917 PNKVEFIIYGI 11 Unmodified _PNKVEFIIYGI_ 0 0 0 L1MC2_dup777|chr2:127354481-127355360:+|1.5743311847544368|0.015922675005408|6.63|151.0|17|2|sense L1MC2_dup777|chr2:127354481-127355360:+|1.5743311847544368|0.015922675005408|6.63|151.0|17|2|sense L1MC2_dup777|chr2:127354481-127355360:+|1.5743311847544368|0.015922675005408|6.63|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 646.8673095703125 2 646.866089 1291.71762 NaN NaN NaN NaN NaN NaN NaN 48.151 1 51.887 51.387 52.387 3.7361 0 0 0 0.38417 1 9589 9589 1.4819 0 1 31164 11281 19806 19817 35843 35843 0.08343402779814824 PNLHTEQRL 9 Unmodified _PNLHTEQRL_ 0 0 0 REV__AluSx1_dup97713|chr17:45400633-45400910:+|1.250958117902036|0.3179576195906821|1.98|151.0|7|2|sense REV__AluSx1_dup97713|chr17:45400633-45400910:+|1.250958117902036|0.3179576195906821|1.98|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 554.2986450195312 2 554.298904 1106.58326 NaN NaN NaN NaN NaN NaN NaN 32.471 1 35.926 35.426 36.426 3.4547 0 0 0 0.3967 1 5630 5630 1.4819 0.15237 1 + 31165 17085 19807 19818 35844 35844 0.0342276207775285 PNLIYKFNT 9 Unmodified _PNLIYKFNT_ 0 0 0 L1MC1_dup2830|chr3:177165018-177165816:+|2.300540160497923|0.0263303980851453|6.45|151.0|6|1|sense L1MC1_dup2830|chr3:177165018-177165816:+|2.300540160497923|0.0263303980851453|6.45|151.0|6|1|sense L1MC1_dup2830|chr3:177165018-177165816:+|2.300540160497923|0.0263303980851453|6.45|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 555.304443359375 2 555.303124 1108.5917 NaN NaN NaN NaN NaN NaN NaN 60.302 1 63.7 63.2 64.2 3.3982 0 0 0 0.37891 1 14065 14065 5.7319 0 1 31166 11128 19808 19819 35845 35845 0.04174315994373501 PNLLRFFGPR 10 Unmodified _PNLLRFFGPR_ 0 0 0 L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|108|3|anti-sense L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|108|3|anti-sense L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|108|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.8719482421875 3 406.236497 1215.68766 -0.099818 -4.055E-05 4.4419 0.0018045 4.3421 0.0017639 406.57228734599215 34.415 0.095009 34.415 34.339 34.434 0 6 5 2 0 0 0 0.84575 1 6137 6137 5.0475 2.549 1 16343 31167 12118 19809 19820 35846 35846 0.0884450862513404 PNLVSGIL 8 Unmodified _PNLVSGIL_ 0 0 0 REV__Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|57|3|anti-sense REV__Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 406.7485046386719 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 70.284 1 73.744 73.244 74.244 3.4598 0 0 0 0.40746 1 16368 16368 0.69038 0 1 + 31168 32662 19810 19821 35847 35847 0.06707301357107553 PNLVSRIL 8 Unmodified _PNLVSRIL_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|70|1|anti-sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|70|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.2869873046875 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 24.212 1 27.677 27.177 28.177 3.4655 0 0 0 0.40738 1 3175 3175 0.79363 0 1 + 31169 24718 19811 19822 35848 35848 0.1011436803109973 PNLWSYISF 9 Unmodified _PNLWSYISF_ 0 0 0 REV__MER2_dup3482|chr6:37865199-37865446:-|1.3630694893677595|0.0042610709418394|8.32|151.0|21|3|anti-sense REV__MER2_dup3482|chr6:37865199-37865446:-|1.3630694893677595|0.0042610709418394|8.32|151.0|21|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 564.2835083007812 2 563.782025 1125.5495 0.48589 0.00027394 -0.094569 -5.3316E-05 0.39132 0.00022062 563.7819900690796 67.509 0.45856 71.017 70.676 71.134 3.5077 57 40 2 0 0 0 0.15547 1 15399 15399 24.991 0.97039 1 242350 + 31170 31145 19812 19823 35849 35849 -0.008256594140220841 PNPEIQNVPLS 11 Unmodified _PNPEIQNVPLS_ 0 0 0 Tigger4a_dup866|chr4:55411251-55411434:+|1.6212513230393373|0.2369105563734665|2.77|151.0|11|2|anti-sense Tigger4a_dup866|chr4:55411251-55411434:+|1.6212513230393373|0.2369105563734665|2.77|151.0|11|2|anti-sense Tigger4a_dup866|chr4:55411251-55411434:+|1.6212513230393373|0.2369105563734665|2.77|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_3 7 604.3189697265625 2 604.319502 1206.62445 NaN NaN NaN NaN NaN NaN NaN 33.551 1 37.23 36.73 37.73 3.6797 0 0 0 0.38417 1 5230 5230 1.1933 0.59184 1 31171 33436 19813 19824 35850 35850 0.029404783265590595 PNPKPNNK 8 Unmodified _PNPKPNNK_ 0 0 0 REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|37|1|sense REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|37|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 454.750732421875 2 454.751059 907.487565 -0.30376 -0.00013814 -3.674 -0.0016708 -3.9778 -0.0018089 454.7510491647235 45.904 0.5918 49.258 49.019 49.611 3.3535 57 39 2 0 0 0 0.82752 1 9776 9776 4.756 0 1 75944 + 31172 30438 19814 19825 35851 35851 0.030120339575091748 PNPQSLGIRA 10 Unmodified _PNPQSLGIRA_ 0 0 0 REV__L1PA8_dup2022|chr4:88633943-88636853:+|3.478697174704469|0.0381410117719041|6.51|151.0|3|1|sense REV__L1PA8_dup2022|chr4:88633943-88636853:+|3.478697174704469|0.0381410117719041|6.51|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 526.7965087890625 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 36.172 1 39.682 39.182 40.182 3.5101 0 0 0 0.53105 1 6010 6010 1.4819 0.15237 1 + 31173 30210 19815 19826 35852 35852 0.05371663566097595 PNQEGNLIY 9 Unmodified _PNQEGNLIY_ 0 0 0 L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|59|3|sense L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|59|3|sense L1PA16_dup2266|chr3:60814199-60816843:-|3.537112946129424|0.0608890429973067|5.86|151.0|59|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.7608642578125 2 524.258914 1046.50327 -0.24747 -0.00012974 0.96697 0.00050694 0.7195 0.00037721 524.2589379968559 43.307 0.63947 46.665 46.402 47.041 3.358 80 42 3 0 0 0 0.36392 1 8869 8869 10.074 0.6908 1 93911 31174 14070 19816 19827 35853 35853 -0.018117243160759244 PNRVWIIEKI 10 Unmodified _PNRVWIIEKI_ 0 0 0 REV__ENST00000527278.5_1_7:64389231-64389459:+|nuORF REV__ENST00000527278.5_1_7:64389231-64389459:+|nuORF MSMS UPN48_class_I_Rep_3 7 634.378173828125 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 105.87 1 109.57 109.07 110.07 3.702 0 0 0 0.53105 1 24977 24977 2.9952 1.5133 1 + 31175 22815 19817 19828 35854 35854 0.12213931110863996 PNSKELLTKTI 11 Unmodified _PNSKELLTKTI_ 0 0 0 REV__L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|150|3|sense REV__L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|150|3|sense MSMS UPN46_class_I_Rep_3 1 622.5221557617188 2 622.366453 1242.71835 NaN NaN NaN NaN NaN NaN NaN 68.336 1 68.336 67.836 68.836 0 0 0 0 0.38417 1 15599 15599 1.1933 0 1 + 31176 30125 19818 19829 35855 35855 0.10670197428839856 PNSRAITYEQ 10 Unmodified _PNSRAITYEQ_ 0 0 0 REV__ROR2|p.H362Afs*21|1|0.17|ENSG00000169071|chr9:91731009-91731010|-/C|frameshift_variant REV__ROR2|p.H362Afs*21|1|0.17|ENSG00000169071|chr9:91731009-91731010|-/C|frameshift_variant MSMS UPN47_class_I_Rep_1 2 589.6683959960938 2 589.793652 1177.57275 NaN NaN NaN NaN NaN NaN NaN 37.929 1 41.594 41.094 42.094 3.6652 0 0 0 0.53105 1 7254 7254 1.1933 0.39971 1 + 31177 20295 19819 19830 35856 35856 -0.008932653673355162 PNSRTEFLF 9 Unmodified _PNSRTEFLF_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|160|2|anti-sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|160|2|anti-sense MSMS UPN48_class_I_Rep_2 6 555.7486572265625 2 555.782556 1109.55056 NaN NaN NaN NaN NaN NaN NaN 22.037 1 25.683 25.183 26.183 3.6459 0 0 0 0.39428 1 2185 2185 2.0598 0 1 + 31178 23748 19820 19831 35857 35857 0.00016554954913772235 PNTKIIIL 8 Unmodified _PNTKIIIL_ 0 0 0 REV__ENSG00000184698|ENST00000642046|OR51M1 REV__ENSG00000184698|ENST00000642046|OR51M1 MSMS UPN47_class_I_Rep_1 2 456.301025390625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 42.267 1 45.946 45.446 46.446 3.6792 0 0 0 0.40746 1 8575 8575 0.69038 0 1 + 31179 20825 19821 19832 35858 35858 0.12628422833677178 PNTPFYVY 8 Unmodified _PNTPFYVY_ 0 0 0 L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|80|3|anti-sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|80|3|anti-sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|80|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.7431945800781 2 500.742368 999.470183 -0.14811 -7.4166E-05 -0.28092 -0.00014067 -0.42904 -0.00021484 500.7421861811398 20.962 0.74673 20.962 20.646 21.392 0 132 82 2 0 0 0 0.82752 1 2246 2246 10.824 0.75 1 139270 31180 10600 19822 19833 35859 35859 -0.02957306368148238 PNVKLLGY 8 Unmodified _PNVKLLGY_ 0 0 0 MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|37|3|anti-sense MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|37|3|anti-sense MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2692565917969 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 54.151 1 54.151 53.651 54.651 0 0 0 0 0.40738 1 11704 11704 0.79363 0 1 31181 16214 19823 19834 35860 35860 0.06739276765483737 PNVKRQAT 8 Unmodified _PNVKRQAT_ 0 0 0 L1ME3Cz_dup10818|chr17:16020097-16020542:-|3.203978783006039|0.3276543609126113|3.29|151.0|6|2|sense L1ME3Cz_dup10818|chr17:16020097-16020542:-|3.203978783006039|0.3276543609126113|3.29|151.0|6|2|sense L1ME3Cz_dup10818|chr17:16020097-16020542:-|3.203978783006039|0.3276543609126113|3.29|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.2639465332031 2 457.264333 912.514114 0.1694 7.746E-05 -0.0083747 -3.8294E-06 0.16102 7.3631E-05 457.26419019360185 85.506 0.74641 89.212 88.863 89.609 3.7058 216 88 3 0 0 0 0.82752 1 20394 20394 2.5775 0 1 673690 31182 12759 19824 19835 35861 35861 0.054357228488470355 PNVQLPQLS 9 Unmodified _PNVQLPQLS_ 0 0 0 REV__ENST00000464942.6_1_12:122709207-122709342:-|nuORF REV__ENST00000464942.6_1_12:122709207-122709342:-|nuORF MSMS UPN47_class_I_Rep_1 2 498.2782287597656 2 498.279649 994.544745 NaN NaN NaN NaN NaN NaN NaN 74.687 1 78.081 77.581 78.581 3.3937 0 0 0 0.39518 1 18395 18395 1.8442 0 1 + 31183 22461 19825 19836 35862 35862 0.04725456443236453 PNYWLLIL 8 Unmodified _PNYWLLIL_ 0 0 0 REV__ENSG00000109805|ENST00000251496|NCAPG REV__ENSG00000109805|ENST00000251496|NCAPG MSMS UPN47_class_I_Rep_1 2 516.3021240234375 2 516.299853 1030.58515 NaN NaN NaN NaN NaN NaN NaN 48.08 1 51.762 51.262 52.262 3.6819 0 0 0 0.40625 1 10340 10340 2.3027 0.4585 1 + 31184 18414 19826 19837 35863 35863 0.07108422833675831 PPAAGGPIPVL 11 Unmodified _PPAAGGPIPVL_ 0 0 0 REV__ENSG00000114315|ENST00000232424|HES1 REV__ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS UPN47_class_I_Rep_3 4 494.7948303222656 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.54074 1 7132 7132 6.7232 0.99131 1 289630 + 31185 18524 19827 19838 35864 35864 0.08103234828263339 PPAFLVLF 8 Unmodified _PPAFLVLF_ 0 0 0 ENST00000230895.10_2_5:10679791-10679998:-|nuORF ENST00000230895.10_2_5:10679791-10679998:-|nuORF ENST00000230895.10_2_5:10679791-10679998:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.2690124511719 2 452.270564 902.526576 0.1807 8.1724E-05 -3.4218 -0.0015476 -3.2411 -0.0014659 452.2687991829547 41.433 0.10195 41.433 41.39 41.492 0 9 6 3 0 0 0 0.82752 1 8131 8131 0.79363 0 1 1084900 31186 5884 19828 19839 35865 35865 0.0714136625916808 PPALAQWW 8 Unmodified _PPALAQWW_ 0 0 0 REV__ENSG00000035141|ENST00000430566|FAM136A REV__ENSG00000035141|ENST00000430566|FAM136A MSMS UPN48_class_I_Rep_2 6 484.75390625 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 24.99 1 28.626 28.126 29.126 3.6363 0 0 0 0.40738 1 2979 2979 0.79363 0 1 + 31187 17634 19829 19840 35866 35866 0.0065412345122695115 PPALICPALE 10 Unmodified _PPALICPALE_ 0 0 0 REV__ENSG00000142698|ENST00000488417|C1orf94 REV__ENSG00000142698|ENST00000488417|C1orf94 MSMS UPN48_class_I_Rep_2 6 512.2821655273438 2 512.280803 1022.54705 NaN NaN NaN NaN NaN NaN NaN 82.696 1 86.365 85.865 86.865 3.669 0 0 0 0.53105 1 19645 19645 1.4819 0.68827 1 + 31188 19414 19830 19841 35867 35867 0.036681688566886805 PPALVEAGFYL 11 Unmodified _PPALVEAGFYL_ 0 0 0 L1PBb_dup256|chr13:72952358-72953233:-|1.055772523576923|0.0292723920180356|5.17|151.0|1|1|sense L1PBb_dup256|chr13:72952358-72953233:-|1.055772523576923|0.0292723920180356|5.17|151.0|1|1|sense L1PBb_dup256|chr13:72952358-72953233:-|1.055772523576923|0.0292723920180356|5.17|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 588.8019409179688 2 588.818607 1175.62266 NaN NaN NaN NaN NaN NaN NaN 56.003 1 59.536 59.036 60.036 3.5333 0 0 0 0.38417 1 11988 11988 3.2813 0.97858 1 31189 15407 19831 19842 35868 35868 0.0418746930861289 PPAPFIFLR 9 Unmodified _PPAPFIFLR_ 0 0 0 ENST00000395103.2_1_8:144806522-144808011:-|nuORF ENST00000395103.2_1_8:144806522-144808011:-|nuORF ENST00000395103.2_1_8:144806522-144808011:-|nuORF MSMS UPN48_class_I_Rep_3 7 529.3131713867188 2 529.313295 1056.61204 NaN NaN NaN NaN NaN NaN NaN 24.642 1 28.411 27.911 28.911 3.769 0 0 0 0.39326 1 2882 2882 2.3027 1.6124 1 31190 6552 19832 19843 35869 35869 0.08599531444815511 PPARRKKM 8 Unmodified _PPARRKKM_ 0 0 0 REV__nc|ENSG00000106078|O75128-5|COBL REV__nc|ENSG00000106078|O75128-5|COBL MSMS UPN47_class_I_Rep_3 4 492.3016662597656 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 49.92 1 53.146 52.646 53.646 3.2262 0 0 0 0.40746 1 10983 10983 0.69038 0 1 + 31191 18316 19833 19844 35870 35870 0.09384939001722614 PPAWVKAV 8 Unmodified _PPAWVKAV_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4;ENST00000544562.5_1_14:23067206-23078652:+|nuORF ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MSMS UPN48_class_I_Rep_3 7 434.25732421875 2 434.257988 866.501424 NaN NaN NaN NaN NaN NaN NaN 104.82 1 108.54 108.04 109.04 3.7192 0 0 0 0.40746 1 24747 24747 0.69038 0 1 31192 1507 19834 19845 35871 35871 0.06283311456604679 PPCACEGTIHH 11 Unmodified _PPCACEGTIHH_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-2|MEGF11 REV__nc|ENSG00000157890|A6BM72-2|MEGF11 MSMS UPN46_class_I_Rep_3 1 582.7493286132812 2 582.749876 1163.4852 NaN NaN NaN NaN NaN NaN NaN 18.753 1 18.753 18.253 19.253 0 0 0 0 0.38417 1 1687 1687 1.1933 0.12188 1 + 31193 19830 19835 19846 35872 35872 -0.0900050583409211 PPCGGGGG 8 Unmodified _PPCGGGGG_ 0 0 0 REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 602.2464599609375 1 601.239872 600.232595 0.44724 0.0002689 2.3698 0.0014248 2.8171 0.0016937 601.2375683083176 68.866 0.15437 72.063 71.967 72.122 3.1977 14 11 2 0 0 0 0.82752 2 16743 16743;16756 0 0 1 44890 + 31194 22221 19836 19847 35873;35874 35873 -0.0835115078234594 PPCSLTGRYLP 11 Unmodified _PPCSLTGRYLP_ 0 0 0 L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|10|1|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|10|1|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 401.8775329589844 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 17.069 1 20.427 19.927 20.927 3.3581 0 0 0 0.38417 1 1182 1182 0.36667 0.13083 1 31195 14591 19837 19848 35875 35875 0.018577436626628696 PPDFSIFPPL 10 Unmodified _PPDFSIFPPL_ 0 0 0 REV__L1MDa_dup5626|chr14:92066216-92066590:-|1.40894911249289|0.2811608107898874|2.33|151.0|23|3|anti-sense REV__L1MDa_dup5626|chr14:92066216-92066590:-|1.40894911249289|0.2811608107898874|2.33|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 565.2868041992188 2 565.30005 1128.58555 NaN NaN NaN NaN NaN NaN NaN 64.679 1 68.134 67.634 68.634 3.4541 0 0 0 0.53105 1 14662 14662 10.074 0 1 + 31196 27537 19838 19849 35876 35876 0.026397977628448643 PPDHEEHLY 9 Unmodified _PPDHEEHLY_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MULTI-MSMS UPN47_class_I_Rep_1 2 568.75390625 2 568.753995 1135.49344 -0.047015 -2.674E-05 0.12428 7.0686E-05 0.077268 4.3946E-05 568.7538688741405 37.708 0.61838 41.373 41.065 41.683 3.6652 60 45 2 0 0 0 0.33654 2 7139 7139;7181 11.64 2.2572 1 86101 31197 2635 19839 19850 35877;35878 35877 -0.06888912321483076 PPDHEEHLY 9 Unmodified _PPDHEEHLY_ 0 0 0 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 ENSG00000129946|ENST00000264554|SHC2 MULTI-MSMS UPN47_class_I_Rep_2 3 568.7537841796875 2 568.753995 1135.49344 0.045396 2.5819E-05 0.16371 9.3114E-05 0.20911 0.00011893 568.7540466390245 37.994 0.56624 41.382 41.06 41.626 3.3879 59 44 2 0 0 0 0.33654 1 7336 7336 11.64 2.2572 1 65212 31198 2635 19839 19850 35879 35879 -0.06888912321483076 PPDNKGQFIA 10 Unmodified _PPDNKGQFIA_ 0 0 0 ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8 ENSG00000204510|ENST00000697200|PRAMEF7 ENSG00000204510|ENST00000697200|PRAMEF7 MULTI-MSMS UPN47_class_I_Rep_2 3 543.7824096679688 2 543.782556 1085.55056 0.31495 0.00017126 0.038369 2.0865E-05 0.35332 0.00019213 543.7823291121089 48.035 0.43509 51.385 51.301 51.736 3.3492 33 23 2 0 0 0 0.54822 1 10440 10440 5.7319 1.4026 1 101020 31199 4949 19840 19851 35880 35880 0.01120554954900399 PPELLLFA 8 Unmodified _PPELLLFA_ 0 0 0 REV__ENST00000487007.1_1_3:32495998-32524241:+|nuORF REV__ENST00000487007.1_1_3:32495998-32524241:+|nuORF MSMS UPN46_class_I_Rep_3 1 450.2528381347656 2 450.265479 898.516405 NaN NaN NaN NaN NaN NaN NaN 52.362 1 52.362 51.862 52.862 0 0 0 0 0.40738 1 11192 11192 0.79363 0 1 + 31200 21791 19841 19852 35881 35881 0.06308758533930359 PPELTYSLM 9 Unmodified _PPELTYSLM_ 0 0 0 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant MSMS UPN48_class_I_Rep_3 7 525.764404296875 2 525.762443 1049.51033 NaN NaN NaN NaN NaN NaN NaN 25.408 1 29.177 28.677 29.677 3.769 0 0 0 0.39428 1 3084 3084 2.0598 0 1 31201 4175 19842 19853 35882 35882 -0.012441277599009481 PPELVSLHLT 10 Unmodified _PPELVSLHLT_ 0 0 0 REV__nc|ENSG00000179057|Q8N9C0|IGSF22 REV__nc|ENSG00000179057|Q8N9C0|IGSF22 MSMS UPN48_class_I_Rep_2 6 553.314208984375 2 553.316232 1104.61791 NaN NaN NaN NaN NaN NaN NaN 69.261 1 72.783 72.283 73.283 3.5216 0 0 0 0.53105 1 16033 16033 1.4819 0.15237 1 + 31202 32071 19843 19854 35883 35883 0.06978585165848017 PPFEFWLWL 9 Unmodified _PPFEFWLWL_ 0 0 0 REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|309|2|anti-sense REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|309|2|anti-sense MSMS UPN48_class_I_Rep_3 7 617.8209228515625 2 617.81841 1233.62227 NaN NaN NaN NaN NaN NaN NaN 35.061 1 38.734 38.234 39.234 3.6721 0 0 0 0.39428 1 5639 5639 2.0598 0.21551 1 + 31203 29532 19844 19855 35884 35884 0.014800943794170962 PPFLFEYS 8 Unmodified _PPFLFEYS_ 0 0 0 L1PA7_dup1252|chr2:97892903-97896689:-|1.97755342390238|0.2318852433591582|3.09|151.0|219|3|anti-sense L1PA7_dup1252|chr2:97892903-97896689:-|1.97755342390238|0.2318852433591582|3.09|151.0|219|3|anti-sense L1PA7_dup1252|chr2:97892903-97896689:-|1.97755342390238|0.2318852433591582|3.09|151.0|219|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.26434326171875 2 500.244744 998.474934 NaN NaN NaN NaN NaN NaN NaN 28.011 1 31.642 31.142 32.142 3.6311 0 0 0 0.40738 1 3798 3798 0.79363 0 1 31204 14751 19845 19856 35885 35885 -0.024364222253893786 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 456.7796936035156 2 456.301865 910.589176 -0.49075 -0.00022393 -0.82506 -0.00037648 -1.3158 -0.00060041 456.3014449898554 41.027 0.24574 44.392 44.238 44.483 3.3655 29 23 2 0 0 0 0.72333 1 8250 8250 0.79363 0 1 51886 + 31205 32342 19846 19857 35886 35886 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_2 6 456.3013610839844 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 44.898 1 48.66 48.16 49.16 3.7617 0 0 0 0.40738 1 8610 8610 0.79363 0 1 + 31206 32342 19846 19857 35887 35887 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_2 6 456.30096435546875 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 45.12 1 48.881 48.381 49.381 3.7617 0 0 0 0.40738 1 8675 8675 0.79363 0 1 + 31207 32342 19846 19857 35888 35888 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_2 6 456.30120849609375 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 45.86 1 49.618 49.118 50.118 3.7579 0 0 0 0.40738 1 8898 8898 0.79363 0 1 + 31208 32342 19846 19857 35889 35889 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_2 6 456.3011474609375 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 46.762 1 50.512 50.012 51.012 3.7494 0 0 0 0.40738 1 9175 9175 0.79363 0 1 + 31209 32342 19846 19857 35890 35890 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_2 6 456.2567443847656 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 49.384 1 53.102 52.602 53.602 3.7175 0 0 0 0.40738 1 9972 9972 0.79363 0 1 + 31210 32342 19846 19857 35891 35891 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MSMS UPN48_class_I_Rep_3 7 456.301025390625 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 47.071 1 50.708 50.208 51.208 3.6363 0 0 0 0.40738 1 9200 9200 0.79363 0 1 + 31211 32342 19846 19857 35892 35892 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 456.301865 910.589176 -0.33391 -0.00015236 -1.4675 -0.00066961 -1.8014 -0.00082197 456.3010971635757 40.423 0.32211 44.095 43.901 44.223 3.6719 -0.094681 0.00016906 NaN 0.79363 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 55510 + 31212 32342 19846 19857 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 456.301865 910.589176 0.051668 2.3576E-05 -1.807 -0.00082454 -1.7553 -0.00080097 456.3009605956557 40.792 0.43731 44.298 43.971 44.408 3.506 0.10824 -0.00014081 NaN 0.79363 79 45 2 NaN NaN NaN NaN 0 NaN NaN 0 121210 + 31213 32342 19846 19857 0.1303051232736152 PPFLLLVL 8 Unmodified _PPFLLLVL_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 456.301865 910.589176 0.11622 5.3031E-05 -1.697 -0.00077434 -1.5808 -0.00072131 456.3010093866415 40.231 0.41201 43.973 43.607 44.019 3.7413 -0.21651 -4.0412E-05 NaN 0.79363 64 40 2 NaN NaN NaN NaN 0 NaN NaN 0 120330 + 31214 32342 19846 19857 0.1303051232736152 PPFLTVSL 8 Unmodified _PPFLTVSL_ 0 0 0 ENSG00000085982.14,USP40,chr2,-,I13.1,233529513,233533478|25|6.38|3|intron;nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 ENSG00000085982.14,USP40,chr2,-,I13.1,233529513,233533478|25|6.38|3|intron ENSG00000085982.14,USP40,chr2,-,I13.1,233529513,233533478|25|6.38|3|intron MSMS UPN48_class_I_Rep_1 5 437.2570495605469 2 437.257654 872.500755 NaN NaN NaN NaN NaN NaN NaN 101.48 1 105.09 104.59 105.59 3.612 0 0 0 0.40625 1 24496 24496 2.3027 0 1 31215 1272 19847 19858 35893 35893 0.05940472016891363 PPFQATWHV 9 Unmodified _PPFQATWHV_ 0 0 0 REV__ENSG00000105662.16,CRTC1,chr19,+,I4.1,18744156,18745822|65|5.13|1|intron REV__ENSG00000105662.16,CRTC1,chr19,+,I4.1,18744156,18745822|65|5.13|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 541.7734985351562 2 541.774534 1081.53451 0.45275 0.00024529 -1.3886 -0.00075233 -0.93589 -0.00050704 541.773567210507 53.87 0.42216 57.056 56.811 57.234 3.1856 21 17 2 0 0 0 0.45688 1 12177 12177 4.756 1.8668 1 79189 + 31216 18301 19848 19859 35894 35894 -0.0029910649134308187 PPFRPRLC 8 Unmodified _PPFRPRLC_ 0 0 0 ENST00000395443.6_1_3:49094899-49114251:-|nuORF ENST00000395443.6_1_3:49094899-49114251:-|nuORF ENST00000395443.6_1_3:49094899-49114251:-|nuORF MSMS UPN46_class_I_Rep_3 1 493.2738342285156 2 493.273647 984.532741 NaN NaN NaN NaN NaN NaN NaN 78.884 1 78.884 78.384 79.384 0 0 0 0 0.40746 1 18500 18500 0.69038 0 1 31217 6554 19849 19860 35895 35895 0.039855612190535794 PPGFPQRA 8 Unmodified _PPGFPQRA_ 0 0 0 REV__L1PA15-16_dup469|chr5:179994498-179995161:-|6.949443476701481|0.0729339793319946|6.57|151.0|45|3|anti-sense REV__L1PA15-16_dup469|chr5:179994498-179995161:-|6.949443476701481|0.0729339793319946|6.57|151.0|45|3|anti-sense MSMS UPN47_class_I_Rep_1 2 435.2469177246094 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 100.16 1 103.95 103.45 104.45 3.7942 0 0 0 0.40738 1 24768 24768 0.79363 0 1 + 31218 29303 19850 19861 35896 35896 0.01604666274374722 PPGLGKEAVT 10 Unmodified _PPGLGKEAVT_ 0 0 0 ENST00000285689.7_2_5:125758923-125759271:+|nuORF ENST00000285689.7_2_5:125758923-125759271:+|nuORF ENST00000285689.7_2_5:125758923-125759271:+|nuORF MSMS UPN48_class_I_Rep_1 5 484.78814697265625 2 484.7742 967.533846 NaN NaN NaN NaN NaN NaN NaN 42.283 1 45.791 45.291 46.291 3.5079 0 0 0 0.53105 1 7802 7802 2.7352 0.43246 1 31219 6040 19851 19862 35897 35897 0.04878054068944948 PPGLPESLARM 11 Unmodified _PPGLPESLARM_ 0 0 0 ENST00000479686.5_1_1:43830638-43833178:-|nuORF ENST00000479686.5_1_1:43830638-43833178:-|nuORF ENST00000479686.5_1_1:43830638-43833178:-|nuORF MSMS UPN46_class_I_Rep_3 1 584.3125 2 584.313166 1166.61178 NaN NaN NaN NaN NaN NaN NaN 55.562 1 55.562 55.062 56.062 0 0 0 0 0.38417 1 12079 12079 1.3295 0 1 31220 6990 19852 19863 35898 35898 0.03513743662665547 PPGLSPPHLSP 11 Unmodified _PPGLSPPHLSP_ 0 0 0 nc|ENSG00000108963|Q9BZG8-5|DPH1 nc|ENSG00000108963|Q9BZG8-5|DPH1 nc|ENSG00000108963|Q9BZG8-5|DPH1 MSMS UPN47_class_I_Rep_3 4 549.800537109375 2 549.800749 1097.58694 NaN NaN NaN NaN NaN NaN NaN 38.044 1 41.286 40.786 41.786 3.2414 0 0 0 0.38417 1 7362 7362 2.9952 0 1 31221 16658 19853 19864 35899 35899 0.04205431851596586 PPGPARRT 8 Unmodified _PPGPARRT_ 0 0 0 ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron;ENSG00000214439.4,FAM185BP,chr7,-,I6.1,77094098,77098909|47|4.67|1|intron ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 426.2459716796875 2 426.245944 850.477334 0.10706 4.5635E-05 0.06134 2.6146E-05 0.1684 7.1781E-05 426.2459587693193 81.81 0.88867 81.81 81.383 82.272 0 198 85 3 0 0 0 0.82752 1 19286 19286 4.3292 1.7518 1 3196000 31222 5616 19854 19865 35900 35900 0.046114710229517186 PPGPARRT 8 Unmodified _PPGPARRT_ 0 0 0 ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron;ENSG00000214439.4,FAM185BP,chr7,-,I6.1,77094098,77098909|47|4.67|1|intron ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 426.24591064453125 2 426.245944 850.477334 0.026633 1.1352E-05 -0.044472 -1.8956E-05 -0.017839 -7.6039E-06 426.24590139260204 78.523 0.80992 81.968 81.613 82.423 3.4456 187 79 3 0 0 0 0.82752 1 19515 19515 4.3292 1.7518 1 836500 31223 5616 19854 19865 35901 35901 0.046114710229517186 PPGPARRT 8 Unmodified _PPGPARRT_ 0 0 0 ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron;ENSG00000214439.4,FAM185BP,chr7,-,I6.1,77094098,77098909|47|4.67|1|intron ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron ENSG00000214439.4,FAM185BP,chr7,-,I1.1,77119627,77121665|40|3.95|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 426.2459716796875 2 426.245944 850.477334 0.16102 6.8632E-05 -0.11172 -4.762E-05 0.049296 2.1012E-05 426.2458741817482 78.249 0.80693 81.87 81.514 82.321 3.6216 218 97 3 0 0 0 0.82752 1 18560 18560 4.3292 1.7518 1 943270 31224 5616 19854 19865 35902 35902 0.046114710229517186 PPGPRRGA 8 Unmodified _PPGPRRGA_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.E1971*|1|0.14|ENSG00000272333|chr19:35732453-35732454|-/C|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MSMS UPN48_class_I_Rep_1 5 404.2327880859375 2 404.232836 806.45112 NaN NaN NaN NaN NaN NaN NaN 75.907 1 79.407 78.907 79.907 3.4996 0 0 0 0.40404 1 18012 18012 5.2307 0 1 31225 5812 19855 19866 35903 35903 0.040152018514731935 PPGSSRSPLLV 11 Unmodified _PPGSSRSPLLV_ 0 0 0 REV__ENSG00000065809.13,FAM107B,chr10,-,I13.1,14542687,14548439|28|8.85|1|intron REV__ENSG00000065809.13,FAM107B,chr10,-,I13.1,14542687,14548439|28|8.85|1|intron MSMS UPN48_class_I_Rep_3 7 555.319580078125 2 555.319306 1108.62406 NaN NaN NaN NaN NaN NaN NaN 97.106 1 101.01 100.51 101.51 3.9084 0 0 0 0.38417 1 23020 23020 2.9952 1.3426 1 + 31226 17758 19856 19867 35904 35904 0.07409103397367289 PPGVLHILRIH 11 Unmodified _PPGVLHILRIH_ 0 0 0 ENST00000591710.5_1_19:37945970-37958237:-|nuORF ENST00000591710.5_1_19:37945970-37958237:-|nuORF ENST00000591710.5_1_19:37945970-37958237:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 626.3914794921875 2 626.387857 1250.76116 0.42783 0.00026799 0.85657 0.00053654 1.2844 0.00080453 626.3887012251098 105.79 0.14785 109.42 109.32 109.47 3.6277 32 19 2 0 0 0 0.66945 1 25469 25469 1.4819 0.15237 1 229780 31227 7624 19857 19868 35905 35905 0.14581057067607617 PPGVPPFSF 9 Unmodified _PPGVPPFSF_ 0 0 0 LTR14B_dup154|chr7:30545776-30546185:+|1.2007342089442958|0.1762208956218898|2.77|151.0|16|3|sense LTR14B_dup154|chr7:30545776-30546185:+|1.2007342089442958|0.1762208956218898|2.77|151.0|16|3|sense LTR14B_dup154|chr7:30545776-30546185:+|1.2007342089442958|0.1762208956218898|2.77|151.0|16|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 473.25018310546875 2 472.747453 943.480354 0.17298 8.1774E-05 0.11861 5.6072E-05 0.29158 0.00013785 472.7473076544597 59.205 1.5398 62.728 62.24 63.779 3.5231 285 116 4 0 0 0 0.33654 1 13204 13204 11.64 0 1 2244100 31228 15571 19858 19869 35906 35906 0.0063530135710152535 PPHASVPH 8 Unmodified _PPHASVPH_ 0 0 0 REV__L1PA7_dup4242|chr5:64934101-64940576:-|1.5196553766608576|0.0696206699314244|4.45|151.0|394|3|anti-sense REV__L1PA7_dup4242|chr5:64934101-64940576:-|1.5196553766608576|0.0696206699314244|4.45|151.0|394|3|anti-sense MSMS UPN48_class_I_Rep_1 5 421.3290100097656 2 421.219395 840.424236 NaN NaN NaN NaN NaN NaN NaN 111.83 1 115.47 114.97 115.97 3.6321 0 0 0 0.40738 1 27134 27134 0.79363 0 1 + 31229 28880 19859 19870 35907 35907 -0.0023590675972400277 PPHFVPKPY 9 Unmodified _PPHFVPKPY_ 0 0 0 REV__ENSG00000048740.18,CELF2,chr10,+,I8.1,11165683,11217424|45|27.69|1|intron REV__ENSG00000048740.18,CELF2,chr10,+,I8.1,11165683,11217424|45|27.69|1|intron MULTI-SECPEP UPN47_class_I_Rep_2 3 541.2620239257812 2 541.295102 1080.57565 0.47638 0.00025786 3.9242 0.0021241 4.4006 0.002382 541.2970446705834 56.865 0.042522 60.166 60.142 60.184 3.3009 6 4 2 0 0 0 0.12321 1 13054 13054 3.9444 1.3669 1 113070 + 31230 17672 19860 19871 35908 35908 0.03858654548139384 PPHGVFSA 8 Unmodified _PPHGVFSA_ 0 0 0 REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8 REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8 MSMS UPN47_class_I_Rep_1 2 406.22021484375 2 406.208495 810.402438 NaN NaN NaN NaN NaN NaN NaN 62.629 1 65.989 65.489 66.489 3.3595 0 0 0 0.40738 1 14768 14768 0.79363 0 1 + 31231 20607 19861 19872 35909 35909 -0.010347115082936398 PPHHMLIE 8 Unmodified _PPHHMLIE_ 0 0 0 REV__ENST00000474988.5_1_6:36410818-36454949:+|nuORF REV__ENST00000474988.5_1_6:36410818-36454949:+|nuORF MSMS UPN48_class_I_Rep_2 6 487.2494812011719 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 64.419 1 67.893 67.393 68.393 3.4743 0 0 0 0.40738 1 14563 14563 0.79363 0 1 + 31232 18473 19862 19873 35910 35910 -0.0022213777178876626 PPHILLSHYI 10 Unmodified _PPHILLSHYI_ 0 0 0 REV__L1ME1_dup3500|chr2:74089105-74089432:-|1.250190046250781|0.0181527862324874|6.11|151.0|25|3|anti-sense REV__L1ME1_dup3500|chr2:74089105-74089432:-|1.250190046250781|0.0181527862324874|6.11|151.0|25|3|anti-sense MSMS UPN47_class_I_Rep_1 2 595.3388061523438 2 595.340041 1188.66553 NaN NaN NaN NaN NaN NaN NaN 108.71 1 112.34 111.84 112.84 3.6355 0 0 0 0.53105 1 26736 26736 6.7232 0.99131 1 + 31233 27766 19863 19874 35911 35911 0.07874284156719114 PPHLASESLGY 11 Unmodified _PPHLASESLGY_ 0 0 0 L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|7|1|sense L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|7|1|sense L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 585.7916259765625 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.74 1 56.935 56.435 57.435 3.1948 0 0 0 0.35398 1 12146 12146 8.7454 0 1 31234 8728 19864 19875 35912 35912 -0.00631479736239271 PPHLIPYL 8 Unmodified _PPHLIPYL_ 0 0 0 REV__LTR16B1_dup99|chr2:53996246-53996722:-|1.7750605524537777|0.0237722232533282|6.22|151.0|3|1|sense REV__LTR16B1_dup99|chr2:53996246-53996722:-|1.7750605524537777|0.0237722232533282|6.22|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 475.27850341796875 2 475.278921 948.543289 NaN NaN NaN NaN NaN NaN NaN 58.827 1 62.326 61.826 62.826 3.4987 0 0 0 0.40738 1 12848 12848 0.79363 0 1 + 31235 30853 19865 19876 35913 35913 0.06695867145117518 PPHLTTLF 8 Unmodified _PPHLTTLF_ 0 0 0 AluJr_dup26538|chr6:42032096-42032386:-|1.695060183756684|0.0437414550259775|5.28|151.0|23|3|anti-sense AluJr_dup26538|chr6:42032096-42032386:-|1.695060183756684|0.0437414550259775|5.28|151.0|23|3|anti-sense AluJr_dup26538|chr6:42032096-42032386:-|1.695060183756684|0.0437414550259775|5.28|151.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 463.2690734863281 2 463.260728 924.506903 0.054026 2.5028E-05 -0.50904 -0.00023582 -0.45502 -0.00021079 463.26020442374653 108.81 0.43485 112.44 112.29 112.72 3.6321 109 49 3 0 0 0 0.82752 1 26368 26368 5.7604 0 1 5959400 31236 140 19866 19877 35914 35914 0.04162990248426013 PPHSTPVAAF 10 Unmodified _PPHSTPVAAF_ 0 0 0 REV__nc|ENSG00000180900|Q14160-2|SCRIB REV__nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS UPN48_class_I_Rep_2 6 512.2664184570312 2 512.266542 1022.51853 0.27188 0.00013928 -0.1979 -0.00010138 0.073981 3.7898E-05 512.2663658873942 49.661 0.45 53.355 53.092 53.542 3.6946 42 27 2 0 0 0 0.51565 1 10083 10083 10.074 0.6908 1 129200 + 31237 20717 19867 19878 35915 35915 0.00817187271752573 PPHYFVIF 8 Unmodified _PPHYFVIF_ 0 0 0 L1ME1_dup562|chr1:50636656-50637153:-|1.151200753550431|0.0103152452224318|6.8|151.0|41|3|anti-sense L1ME1_dup562|chr1:50636656-50637153:-|1.151200753550431|0.0103152452224318|6.8|151.0|41|3|anti-sense L1ME1_dup562|chr1:50636656-50637153:-|1.151200753550431|0.0103152452224318|6.8|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.2718200683594 2 510.271096 1018.52764 -0.26117 -0.00013327 1.0605 0.00054116 0.79937 0.00040789 510.27181387681463 13.121 0.1806 16.509 16.448 16.629 3.388 27 16 3 0 0 0 0.82752 1 251 251 0.79363 0 1 42140 31238 12424 19868 19879 35916 35916 0.0191158062808654 PPIAHPHK 8 Unmodified _PPIAHPHK_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|224|1|anti-sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|224|1|anti-sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|224|1|anti-sense MSMS UPN48_class_I_Rep_2 6 448.76068115234375 2 448.758687 895.502821 NaN NaN NaN NaN NaN NaN NaN 80.855 1 84.512 84.012 85.012 3.6567 0 0 0 0.40581 1 19182 19182 2.8892 0.31174 1 31239 13763 19869 19880 35917 35917 0.05088945545367096 PPIHRLPVPA 10 Unmodified _PPIHRLPVPA_ 0 0 0 REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.8350830078125 2 548.834926 1095.6553 0.53984 0.00029628 0.17654 9.6894E-05 0.71638 0.00039318 548.8348505252652 109.26 0.87868 112.86 112.76 113.64 3.6046 252 115 3 0 0 0 0.51565 1 26954 26954 10.074 0 1 4788500 + 31240 27477 19870 19881 35918 35918 0.11129721222164335 PPIHRLPVPA 10 Unmodified _PPIHRLPVPA_ 0 0 0 REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.8352661132812 2 548.834926 1095.6553 0.48918 0.00026848 0.33879 0.00018594 0.82797 0.00045442 548.8349289106466 108.77 0.54192 112.44 112.29 112.83 3.6746 221 59 4 0 0 0 0.47413 1 25870 25870 13.906 0.39817 1 118720000 + 31241 27477 19870 19881 35919 35919 0.11129721222164335 PPIHRLPVPA 10 Unmodified _PPIHRLPVPA_ 0 0 0 REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 548.834926 1095.6553 0.53981 0.00029627 0.38495 0.00021127 0.92476 0.00050754 548.8349899260429 108.71 0.43741 112.34 112.18 112.62 3.6355 0.012197 -2.3176E-05 NaN 13.906 174 44 5 NaN NaN NaN NaN 0 NaN NaN 0 204330000 + 31242 27477 19870 19881 0.11129721222164335 PPIHRLPVPA 10 Unmodified _PPIHRLPVPA_ 0 0 0 REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 548.834926 1095.6553 0.61637 0.00033829 0.43273 0.0002375 1.0491 0.00057579 548.8350314225005 108.73 0.64368 112.27 112.08 112.73 3.5333 -0.064597 2.9279E-05 NaN 13.906 267 75 4 NaN NaN NaN NaN 0 NaN NaN 0 154140000 + 31243 27477 19870 19881 0.11129721222164335 PPIHRLPVPA 10 Unmodified _PPIHRLPVPA_ 0 0 0 REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense REV__L1MD3_dup3107|chr10:43170179-43171281:+|1.8600520544765504|0.2213892521101577|3.07|151.0|56|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 548.834926 1095.6553 0.49634 0.00027241 0.44547 0.00024449 0.94181 0.0005169 548.8350250951762 108.72 0.63731 112.26 112.09 112.73 3.5382 -0.069964 4.3259E-05 NaN 13.906 272 72 5 NaN NaN NaN NaN 0 NaN NaN 0 173970000 + 31244 27477 19870 19881 0.11129721222164335 PPITATTMRR 10 Unmodified _PPITATTMRR_ 0 0 0 ENST00000243389.7_1_5:150847283-150847322:+|nuORF ENST00000243389.7_1_5:150847283-150847322:+|nuORF ENST00000243389.7_1_5:150847283-150847322:+|nuORF MSMS UPN48_class_I_Rep_2 6 572.69677734375 2 572.318783 1142.62301 NaN NaN NaN NaN NaN NaN NaN 39.803 1 43.545 43.045 44.045 3.7413 0 0 0 0.53105 1 7102 7102 1.1933 0.39971 1 31245 5903 19871 19882 35920 35920 0.05740565756809701 PPITELILELQ 11 Unmodified _PPITELILELQ_ 0 0 0 REV__nc|ENSG00000181085|Q8TD08-2|MAPK15 REV__nc|ENSG00000181085|Q8TD08-2|MAPK15 MSMS UPN47_class_I_Rep_2 3 633.3681640625 2 633.371204 1264.72785 NaN NaN NaN NaN NaN NaN NaN 86.435 1 89.876 89.376 90.376 3.4407 0 0 0 0.38417 1 21499 21499 1.0715 0 1 + 31246 20724 19872 19883 35921 35921 0.10607965714393686 PPIVNGSKLY 10 Unmodified _PPIVNGSKLY_ 0 0 0 REV__L1MA2_dup860|chr2:148291650-148293028:+|1.2387979521843986|0.0177079068747893|6.13|151.0|82|2|anti-sense REV__L1MA2_dup860|chr2:148291650-148293028:+|1.2387979521843986|0.0177079068747893|6.13|151.0|82|2|anti-sense MSMS UPN48_class_I_Rep_1 5 544.7445678710938 2 544.310949 1086.60735 NaN NaN NaN NaN NaN NaN NaN 62.591 1 66.054 65.554 66.554 3.4625 0 0 0 0.53105 1 14021 14021 2.7352 0 1 + 31247 24948 19873 19884 35922 35922 0.06750602511442594 PPIVVSVVDM 10 Unmodified _PPIVVSVVDM_ 0 0 0 REV__ENST00000543290.1_1_12:1099621-1099747:-|nuORF REV__ENST00000543290.1_1_12:1099621-1099747:-|nuORF MSMS UPN48_class_I_Rep_3 7 528.3139038085938 2 528.293911 1054.57327 NaN NaN NaN NaN NaN NaN NaN 89.221 1 93.05 92.55 93.55 3.8293 0 0 0 0.53105 1 21174 21174 1.6526 0 1 + 31248 22925 19874 19885 35923 35923 0.048164380281832564 PPKDLRIRRQH 11 Unmodified _PPKDLRIRRQH_ 0 0 0 ENSG00000067798|ENST00000397909|NAV3;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3 ENSG00000067798|ENST00000397909|NAV3 ENSG00000067798|ENST00000397909|NAV3 MSMS UPN48_class_I_Rep_3 7 472.6181945800781 3 472.616259 1414.82695 NaN NaN NaN NaN NaN NaN NaN 93.704 1 97.596 97.096 98.096 3.8914 0 0 0 0.38417 1 22211 22211 0.50596 0.051438 1 31249 1039 19875 19886 35924 35924 0.13612846242494925 PPKLLQWN 8 Unmodified _PPKLLQWN_ 0 0 0 REV__nc|ENSG00000174611|Q8NBH2-3|KY REV__nc|ENSG00000174611|Q8NBH2-3|KY MSMS UPN47_class_I_Rep_1 2 498.2855529785156 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 19.716 1 23.328 22.828 23.828 3.6118 0 0 0 0.40746 1 1864 1864 0.69038 0 1 + 31250 20529 19876 19887 35925 35925 0.06250368031078324 PPKMKKTI 8 Unmodified _PPKMKKTI_ 0 0 0 L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|123|3|sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|123|3|sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|123|3|sense MSMS UPN47_class_I_Rep_3 4 471.7958068847656 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 29.258 1 32.581 32.081 33.081 3.3235 0 0 0 0.40746 1 4704 4704 0.69038 0.69038 1 31251 10193 19877 19888 35926 35926 0.10008482818830089 PPKMKKTI 8 Unmodified _PPKMKKTI_ 0 0 0 L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|123|3|sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|123|3|sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|123|3|sense MSMS UPN47_class_I_Rep_3 4 471.79522705078125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.13 115.63 116.63 3.5098 0 0 0 0.40746 1 27636 27636 0.69038 0 1 31252 10193 19877 19888 35927 35927 0.10008482818830089 PPKRPVLLQC 10 Unmodified _PPKRPVLLQC_ 0 0 0 REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF MSMS UPN46_class_I_Rep_3 1 575.8428344726562 2 575.841894 1149.66923 NaN NaN NaN NaN NaN NaN NaN 90.163 1 90.163 89.663 90.663 0 0 0 0 0.53105 1 21731 21731 1.4819 0 1 + 31253 21972 19878 19889 35928 35928 0.10038630658937109 PPKTIILV 8 Unmodified _PPKTIILV_ 0 0 0 L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|43|2|sense L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|43|2|sense L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|43|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.29754638671875 2 440.796946 879.57934 -0.35476 -0.00015638 3.0511 0.0013449 2.6963 0.0011885 440.7996077838203 64.202 0.5541 67.376 67.075 67.629 3.1741 71 38 2 0 0 0 0.82752 1 15364 15364 2.8892 2.0956 1 113630 31254 15072 19879 19890 35929 35929 0.1347332432200119 PPKVGIAKF 9 Unmodified _PPKVGIAKF_ 0 0 0 REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF MSMS UPN47_class_I_Rep_3 4 479.2582702636719 2 478.80002 955.585488 NaN NaN NaN NaN NaN NaN NaN 22.393 1 25.743 25.243 26.243 3.3496 0 0 0 0.39428 1 2672 2672 2.0598 0 1 + 31255 20112 19880 19891 35930 35930 0.10591842553515107 PPKWLRKK 8 Unmodified _PPKWLRKK_ 0 0 0 HERV17-int_dup199|chr3:87940824-87945057:-|2.2819962277081025|0.0575669791136135|5.31|134.0|9|1|sense HERV17-int_dup199|chr3:87940824-87945057:-|2.2819962277081025|0.0575669791136135|5.31|134.0|9|1|sense HERV17-int_dup199|chr3:87940824-87945057:-|2.2819962277081025|0.0575669791136135|5.31|134.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 526.8384399414062 2 526.840011 1051.66547 NaN NaN NaN NaN NaN NaN NaN 112.92 1 116.43 115.93 116.93 3.5098 0 0 0 0.40746 1 27688 27688 0.69038 0 1 31256 8006 19881 19892 35931 35931 0.14170328947352573 PPKWPKEV 8 Unmodified _PPKWPKEV_ 0 0 0 ENSG00000174358|ENST00000304460|SLC6A19 ENSG00000174358|ENST00000304460|SLC6A19 ENSG00000174358|ENST00000304460|SLC6A19 MSMS UPN47_class_I_Rep_2 3 490.7802734375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.38 1 116.9 116.4 117.4 3.5171 0 0 0 0.40643 1 27577 27577 2.0598 0.21551 1 31257 4679 19882 19893 35932 35932 0.05850965656804874 PPKYVLVR 8 Unmodified _PPKYVLVR_ 0 0 0 ENST00000424426.1_1_6:49518739-49519689:+|nuORF;ENSG00000197261|ENST00000529246|C6orf141 ENST00000424426.1_1_6:49518739-49519689:+|nuORF ENST00000424426.1_1_6:49518739-49519689:+|nuORF MSMS UPN47_class_I_Rep_3 4 486.3033447265625 2 486.30547 970.596387 NaN NaN NaN NaN NaN NaN NaN 42.89 1 46.13 45.63 46.63 3.2394 0 0 0 0.40604 1 8846 8846 2.5775 0.51773 1 31258 5359 19883 19894 35933 35933 0.10991244927799926 PPLFLMLL 8 Unmodified _PPLFLMLL_ 0 0 0 REV__L1PA5_dup59|chr1:41091069-41093529:+|2.3078300635353144|0.0839258342464884|4.78|151.0|77|1|anti-sense REV__L1PA5_dup59|chr1:41091069-41093529:+|2.3078300635353144|0.0839258342464884|4.78|151.0|77|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.28948974609375 2 472.2879 942.561247 0.21216 0.0001002 0.37493 0.00017707 0.58708 0.00027727 472.2881005519537 107.28 0.13811 110.96 110.83 110.97 3.6783 15 13 2 0 0 0 0.82752 1 25323 25323 2.8892 0 1 509680 + 31259 29731 19884 19895 35934 35934 0.0876686607564352 PPLHFSLLR 9 Unmodified _PPLHFSLLR_ 0 0 0 HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|28|1|anti-sense HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|28|1|anti-sense HAL1_dup16094|chr11:118387165-118387785:+|1.0635497154628375|0.4793840052443876|1.15|151.0|28|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3220825195312 2 540.321651 1078.62875 0.36405 0.0001967 0.34558 0.00018673 0.70963 0.00038343 540.3217795616581 109.46 0.28259 109.46 109.35 109.63 0 72 23 4 0 0 0 0.36392 1 26881 26881 10.074 2.7847 1 12485000 31260 7820 19885 19896 35935 35935 0.09258032330808419 PPLHLFLAFL 10 Unmodified _PPLHLFLAFL_ 0 0 0 REV__ENST00000392086.8_2_2:220147893-220148193:+|nuORF REV__ENST00000392086.8_2_2:220147893-220148193:+|nuORF MSMS UPN46_class_I_Rep_3 1 584.348388671875 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 30.211 1 30.211 29.711 30.711 0 0 0 0 0.53105 1 4887 4887 1.8442 0 1 + 31261 22087 19886 19897 35936 35936 0.10852660167461181 PPLHPYST 8 Unmodified _PPLHPYST_ 0 0 0 nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1 nc|ENSG00000160688|Q8NFF5-4|FLAD1 nc|ENSG00000160688|Q8NFF5-4|FLAD1 MSMS UPN48_class_I_Rep_1 5 456.0344543457031 2 456.23471 910.454868 NaN NaN NaN NaN NaN NaN NaN 38.151 1 41.657 41.157 42.157 3.5052 0 0 0 0.40738 1 6572 6572 0.79363 0 1 31262 16729 19887 19898 35937 35937 -0.003941731653412717 PPLIENPK 8 Unmodified _PPLIENPK_ 0 0 0 REV__ENSG00000008853|ENST00000251822|RHOBTB2 REV__ENSG00000008853|ENST00000251822|RHOBTB2 MSMS UPN47_class_I_Rep_2 3 454.2799072265625 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 59.416 1 62.689 62.189 63.189 3.2731 0 0 0 0.40738 1 13828 13828 0.79363 0 1 + 31263 17558 19888 19899 35938 35938 0.06046972902856851 PPLIWVVK 8 Unmodified _PPLIWVVK_ 0 0 0 MLT2A1_dup1655|chr6:136586630-136587073:+|1.6681185685153217|0.0800869196165457|4.38|151.0|6|2|sense MLT2A1_dup1655|chr6:136586630-136587073:+|1.6681185685153217|0.0800869196165457|4.38|151.0|6|2|sense MLT2A1_dup1655|chr6:136586630-136587073:+|1.6681185685153217|0.0800869196165457|4.38|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 476.30657958984375 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 63.097 1 63.097 62.597 63.597 0 0 0 0 0.40738 1 14150 14150 0.79363 0 1 31264 16496 19889 19900 35939 35939 0.11805030558889484 PPLIWVVK 8 Unmodified _PPLIWVVK_ 0 0 0 MLT2A1_dup1655|chr6:136586630-136587073:+|1.6681185685153217|0.0800869196165457|4.38|151.0|6|2|sense MLT2A1_dup1655|chr6:136586630-136587073:+|1.6681185685153217|0.0800869196165457|4.38|151.0|6|2|sense MLT2A1_dup1655|chr6:136586630-136587073:+|1.6681185685153217|0.0800869196165457|4.38|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 476.306640625 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 82.863 1 82.863 82.363 83.363 0 0 0 0 0.40738 1 19652 19652 0.79363 0 1 31265 16496 19889 19900 35940 35940 0.11805030558889484 PPLKIVTI 8 Unmodified _PPLKIVTI_ 0 0 0 nc|ENSG00000099625|Q8N350-4|CBARP;ENSG00000099625|ENST00000650044|CBARP nc|ENSG00000099625|Q8N350-4|CBARP nc|ENSG00000099625|Q8N350-4|CBARP MULTI-MSMS UPN48_class_I_Rep_3 7 440.7998962402344 2 440.796946 879.57934 0.066711 2.9406E-05 1.8819 0.00082955 1.9486 0.00085896 440.7993496505088 44.585 1.2023 48.222 47.614 48.816 3.6372 118 80 2 0 0 0 0.82752 1 8357 8357 0.69038 0 1 113190 31266 1442 19890 19901 35941 35941 0.1347332432201256 PPLKKKKLSV 10 Unmodified _PPLKKKKLSV_ 0 0 0 REV__L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|12|1|sense REV__L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 569.389892578125 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 69.353 1 72.558 72.058 73.058 3.2044 0 0 0 0.53105 1 16905 16905 0.35063 0.35063 1 + 31267 25643 19891 19902 35942 35942 0.2016030712159136 PPLKLILILAL 11 Unmodified _PPLKLILILAL_ 0 0 0 MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|10|2|sense MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|10|2|sense MLT1F_dup169|chr1:111677381-111677921:-|1.2862768995550742|0.0260042756054897|5.63|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 602.4269409179688 2 602.425585 1202.83662 NaN NaN NaN NaN NaN NaN NaN 94.631 1 94.631 94.131 95.131 0 0 0 0 0.38417 1 22954 22954 0 0 1 31268 16377 19892 19903 35943 35943 0.2433122147535869 PPLKLKTLI 9 Unmodified _PPLKLKTLI_ 0 0 0 REV__ENST00000591666.5_1_19:5626419-5648065:+|nuORF REV__ENST00000591666.5_1_19:5626419-5648065:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.8551330566406 2 511.852253 1021.68995 NaN NaN NaN NaN NaN NaN NaN 29.029 1 32.661 32.161 33.161 3.6316 0 0 0 0.4029 1 4072 4072 0 0 1 + 31269 23171 19893 19904 35944 35944 0.17997544310253488 PPLKLLLG 8 Unmodified _PPLKLLLG_ 0 0 0 MLT1J_dup2544|chr3:15767373-15767549:+|1.4416656327765065|0.0184465264221673|6.29|151.0|4|2|sense MLT1J_dup2544|chr3:15767373-15767549:+|1.4416656327765065|0.0184465264221673|6.29|151.0|4|2|sense MLT1J_dup2544|chr3:15767373-15767549:+|1.4416656327765065|0.0184465264221673|6.29|151.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 426.2947082519531 2 425.791664 849.568775 -0.52665 -0.00022424 2.9235 0.0012448 2.3969 0.0010206 425.7902027564446 70.236 0.64534 73.519 73.266 73.912 3.2828 138 59 4 0 0 0 0.82752 3 17090 17090;17096;17145 0 0 1 171460 31270 16459 19894 19905 35945;35946;35947 35945 0.1379734166758908 PPLKLLLG 8 Unmodified _PPLKLLLG_ 0 0 0 MLT1J_dup2544|chr3:15767373-15767549:+|1.4416656327765065|0.0184465264221673|6.29|151.0|4|2|sense MLT1J_dup2544|chr3:15767373-15767549:+|1.4416656327765065|0.0184465264221673|6.29|151.0|4|2|sense MLT1J_dup2544|chr3:15767373-15767549:+|1.4416656327765065|0.0184465264221673|6.29|151.0|4|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 426.294677734375 2 425.791664 849.568775 -0.52665 -0.00022424 2.9235 0.0012448 2.3969 0.0010206 425.7902027564446 70.236 0.64534 73.519 73.266 73.912 3.2828 138 59 4 0 0 0 0.72333 1 17197 17197 0 0 1 171460 31271 16459 19894 19905 35948 35948 0.1379734166758908 PPLLDHVL 8 Unmodified _PPLLDHVL_ 0 0 0 REV__nc|ENSG00000168268|Q9H857-3|NT5DC2 REV__nc|ENSG00000168268|Q9H857-3|NT5DC2 MULTI-MSMS UPN46_class_I_Rep_3 1 452.26885986328125 2 452.268553 902.522553 -0.1513 -6.8428E-05 1.0656 0.00048193 0.91427 0.0004135 452.26889774141137 26.342 0.13588 26.342 26.227 26.362 0 28 13 3 0 0 0 0.82752 1 3741 3741 0.79363 0 1 127080 + 31272 20267 19895 19906 35949 35949 0.06739276765483737 PPLLDVKWR 9 Unmodified _PPLLDVKWR_ 0 0 0 ENST00000422377.5_1_6:111804278-111804845:-|nuORF ENST00000422377.5_1_6:111804278-111804845:-|nuORF ENST00000422377.5_1_6:111804278-111804845:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.3342895507812 2 562.334759 1122.65496 0.63501 0.00035709 0.1637 9.2057E-05 0.79871 0.00044914 562.3343733601961 109.34 0.88783 112.87 112.69 113.58 3.5307 299 123 3 0 0 0 0.46434 2 26647 26602;26647 4.3292 0.38484 1 10055000 31273 6687 19896 19907 35950;35951 35951 0.09854301502286944 PPLLDVKWR 9 Unmodified _PPLLDVKWR_ 0 0 0 ENST00000422377.5_1_6:111804278-111804845:-|nuORF ENST00000422377.5_1_6:111804278-111804845:-|nuORF ENST00000422377.5_1_6:111804278-111804845:-|nuORF MSMS UPN48_class_I_Rep_1 5 562.3345947265625 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.62 1 113.25 112.75 113.75 3.6321 0 0 0 0.38478 1 26627 26627 4.3292 0.38484 1 31274 6687 19896 19907 35952 35952 0.09854301502286944 PPLLNHSV 8 Unmodified _PPLLNHSV_ 0 0 0 ENSG00000186118|ENST00000334122|TEX38 ENSG00000186118|ENST00000334122|TEX38 ENSG00000186118|ENST00000334122|TEX38 MSMS UPN47_class_I_Rep_2 3 438.7694091796875 2 438.750527 875.486502 NaN NaN NaN NaN NaN NaN NaN 117.62 1 121.11 120.61 121.61 3.4891 0 0 0 0.40738 1 28754 28754 0.79363 0 1 31275 5142 19897 19908 35953 35953 0.04377819588626153 PPLLPLLFPL 10 Unmodified _PPLLPLLFPL_ 0 0 0 REV__Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|1|1|sense REV__Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 560.3648681640625 2 560.362453 1118.71035 NaN NaN NaN NaN NaN NaN NaN 103.01 1 106.63 106.13 107.13 3.6164 0 0 0 0.53105 1 24831 24831 1.8442 0 1 + 31276 32622 19898 19909 35954 35954 0.1557471497003462 PPLLTFLSV 9 Unmodified _PPLLTFLSV_ 0 0 0 REV__ENST00000341307.6_1_11:63448974-63449103:+|nuORF REV__ENST00000341307.6_1_11:63448974-63449103:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 494.3478698730469 2 493.799686 985.584819 0.26134 0.00012905 2.2462 0.0011092 2.5075 0.0012382 493.8009531759297 89.656 0.34311 93.053 92.93 93.273 3.3976 57 41 2 0 0 0 0.12462 1 22464 22464 1.8442 0 1 450080 + 31277 21825 19899 19910 35955 35955 0.09145003113815164 PPLMIPVF 8 Unmodified _PPLMIPVF_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 457.2641296386719 2 457.264425 912.514297 0.18092 8.2731E-05 0.61871 0.00028291 0.79963 0.00036564 457.2644144732844 77.696 0.27395 77.696 77.621 77.895 0 38 29 2 0 0 0 0.82752 1 18168 18168 0.79363 0 1 124630 31278 2854 19900 19911 35956 35956 0.05454006524507804 PPLMIPVF 8 Unmodified _PPLMIPVF_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 457.26373291015625 2 457.264425 912.514297 0.18549 8.4819E-05 0.4112 0.00018803 0.59669 0.00027285 457.26442633056166 79.263 0.49037 79.263 79.036 79.527 0 62 47 2 0 0 0 0.82752 1 18574 18574 0.79363 0 1 106010 31279 2854 19900 19911 35957 35957 0.05454006524507804 PPLMIPVF 8 Unmodified _PPLMIPVF_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 457.2640686035156 2 457.264425 912.514297 0.16412 7.5045E-05 -0.78664 -0.0003597 -0.62253 -0.00028466 457.26426728541645 73.563 0.33704 77.141 77.012 77.349 3.5779 62 35 3 0 0 0 0.72333 1 17249 17249 2.8892 2.8892 1 192060 31280 2854 19900 19911 35958 35958 0.05454006524507804 PPLMIPVF 8 Unmodified _PPLMIPVF_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 457.264425 912.514297 0.17943 8.2048E-05 -0.017621 -8.0573E-06 0.16181 7.3991E-05 457.26430831500056 77.194 0.21568 77.194 77.153 77.368 0 0.026837 0.0004004 NaN 2.8892 48 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1352400 31281 2854 19900 19911 0.05454006524507804 PPLMIPVF 8 Unmodified _PPLMIPVF_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 457.264425 912.514297 0.18549 8.4819E-05 0.4112 0.00018803 0.59669 0.00027285 457.26442633056166 79.263 0.49037 79.263 79.036 79.527 0 -0.072353 8.3424E-05 NaN 0.79363 62 47 2 NaN NaN NaN NaN 0 NaN NaN 0 106010 31282 2854 19900 19911 0.05454006524507804 PPLMIPVF 8 Unmodified _PPLMIPVF_ 0 0 0 ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 ENST00000535530.5_1_12:23716331-23887638:-|nuORF ENST00000535530.5_1_12:23716331-23887638:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 457.264425 912.514297 -0.14742 -6.7412E-05 0.19238 8.797E-05 0.044959 2.0558E-05 457.26447451085863 76.15 0.10458 79.408 79.349 79.454 3.2573 0.072353 -0.00011669 NaN 0.79363 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 38986 31283 2854 19900 19911 0.05454006524507804 PPLPAARRQPL 11 Unmodified _PPLPAARRQPL_ 0 0 0 REV__ENST00000374810.7_1_20:33292105-33293196:+|nuORF REV__ENST00000374810.7_1_20:33292105-33293196:+|nuORF MSMS UPN47_class_I_Rep_3 4 608.7035522460938 2 608.369664 1214.72478 NaN NaN NaN NaN NaN NaN NaN 107.51 1 111.04 110.54 111.54 3.5382 0 0 0 0.30011 1 26251 26251 12.241 0 1 + 31284 22002 19901 19912 35959 35959 0.1260018017087532 PPLPPPPPRRK 11 Unmodified _PPLPPPPPRRK_ 0 0 0 nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19;ENST00000471231.6_1_16:30937150-30941463:+|nuORF nc|ENSG00000099364|Q6PCT2-2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 MULTI-MSMS UPN47_class_I_Rep_1 2 626.890869140625 2 626.387857 1250.76116 0.55634 0.00034849 -0.441 -0.00027624 0.11534 7.2249E-05 626.8887469438961 103.74 0.65985 107.5 107.09 107.75 3.7627 160 99 2 0 0 0 0.64955 1 25477 25477 3.2813 0.54611 1 63557000 31285 1439 19902 19913 35960 35960 0.1458105706758488 PPLRASRRKQ 10 Unmodified _PPLRASRRKQ_ 0 0 0 REV__ENST00000530617.5_2_11:77103570-77123105:-|nuORF REV__ENST00000530617.5_2_11:77103570-77123105:-|nuORF MSMS UPN47_class_I_Rep_1 2 604.8698120117188 2 604.870363 1207.72617 NaN NaN NaN NaN NaN NaN NaN 97.485 1 101.27 100.77 101.77 3.7861 0 0 0 0.53105 1 24156 24156 1.6526 1.1279 1 + 31286 22844 19903 19914 35961 35961 0.13061814259663151 PPLSNCRTL 9 Unmodified _PPLSNCRTL_ 0 0 0 L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|31|1|anti-sense L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|31|1|anti-sense L1MB7_dup3739|chr3:9965508-9966224:-|1.4320326832617607|0.4182532440879726|1.78|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 500.765380859375 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 29.907 1 33.449 32.949 33.949 3.542 0 0 0 0.3967 1 4225 4225 1.4819 0.68827 1 31287 10826 19904 19915 35962 35962 0.017372299113503686 PPLSRLVV 8 Unmodified _PPLSRLVV_ 0 0 0 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 MSMS UPN47_class_I_Rep_1 2 440.79931640625 2 440.78437 879.554188 NaN NaN NaN NaN NaN NaN NaN 32.973 1 36.686 36.186 37.186 3.7131 0 0 0 0.40604 1 5746 5746 2.5775 0 1 31288 1724 19905 19916 35963 35963 0.10959269519435111 PPMRLFADNP 10 Unmodified _PPMRLFADNP_ 0 0 0 REV__Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|16|3|sense REV__Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|16|3|sense MSMS UPN47_class_I_Rep_2 3 579.779541015625 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 58.822 1 62.104 61.604 62.604 3.2818 0 0 0 0.53105 1 13646 13646 1.3295 0.25807 1 + 31289 32711 19906 19917 35964 35964 -0.002108120258526469 PPMRVLFHL 9 Unmodified _PPMRVLFHL_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MSMS UPN48_class_I_Rep_3 7 555.3190307617188 2 555.318054 1108.62156 NaN NaN NaN NaN NaN NaN NaN 94.749 1 98.65 98.15 99.15 3.9016 0 0 0 0.4007 1 22455 22455 0.52476 0 1 + 31290 19459 19907 19918 35965 35965 0.07158976458731559 PPNDNVDTVNI 11 Unmodified _PPNDNVDTVNI_ 0 0 0 REV__PCDH9|p.N1112Tfs*11|1|0.05|ENSG00000184226|chr13:66631217-66631217|G/-|frameshift_variant REV__PCDH9|p.N1112Tfs*11|1|0.05|ENSG00000184226|chr13:66631217-66631217|G/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 599.2922973632812 2 599.290942 1196.56733 NaN NaN NaN NaN NaN NaN NaN 78.049 1 81.391 80.891 81.891 3.3428 0 0 0 0.36307 1 19383 19383 8.1555 0 1 + 31291 20811 19908 19919 35966 35966 -0.023089889497896365 PPPALAGRGR 10 Unmodified _PPPALAGRGR_ 0 0 0 REV__L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|138|3|anti-sense REV__L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|138|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2955322265625 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 32.933 1 32.933 32.433 33.433 0 0 0 0 0.53105 1 5699 5699 1.8442 0 1 + 31292 29442 19909 19920 35967 35967 0.0766340449413292 PPPAPPPPPTF 11 Unmodified _PPPAPPPPPTF_ 0 0 0 ENST00000480400.1_1_2:175446032-175450310:-|nuORF;nc|ENSG00000115935|O43516-4|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1 ENST00000480400.1_1_2:175446032-175450310:-|nuORF ENST00000480400.1_1_2:175446032-175450310:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 557.7999877929688 2 557.800217 1113.58588 0.49575 0.00027653 -0.76981 -0.0004294 -0.27405 -0.00015287 557.8001100570709 69.463 1.187 72.984 72.52 73.707 3.5216 290 97 5 0 0 0 0.59712 1 16269 16269 5.2969 0 1 1888800 31293 2151 19910 19921 35968 35968 0.03363217482683467 PPPAPPPPPTF 11 Unmodified _PPPAPPPPPTF_ 0 0 0 ENST00000480400.1_1_2:175446032-175450310:-|nuORF;nc|ENSG00000115935|O43516-4|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1 ENST00000480400.1_1_2:175446032-175450310:-|nuORF ENST00000480400.1_1_2:175446032-175450310:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 557.8004150390625 2 557.800217 1113.58588 0.46995 0.00026214 -0.86151 -0.00048055 -0.39156 -0.00021841 557.800105764204 69.35 1.1396 72.863 72.474 73.614 3.5128 294 89 5 0 0 0 0.32821 1 15920 15920 13.042 0.80181 1 1798400 31294 2151 19910 19921 35969 35969 0.03363217482683467 PPPFWLEVY 9 Unmodified _PPPFWLEVY_ 0 0 0 L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|119|2|anti-sense L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|119|2|anti-sense L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|119|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 574.2947387695312 2 574.294768 1146.57498 0.47567 0.00027317 -0.19062 -0.00010947 0.28505 0.0001637 574.2945780557941 77.115 0.28735 80.726 80.525 80.812 3.6116 54 27 3 0 0 0 0.086155 1 18247 18247 23.148 23.148 1 491450 31295 12395 19911 19922 35970 35970 0.007558151084367637 PPPFWLEVY 9 Unmodified _PPPFWLEVY_ 0 0 0 L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|119|2|anti-sense L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|119|2|anti-sense L1ME1_dup3361|chr2:63904465-63906535:+|1.0113047358368834|0.0826053313259274|3.61|150.0|119|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 574.294768 1146.57498 0.43347 0.00024894 -0.099957 -5.7405E-05 0.33352 0.00019154 574.2946801462048 77.339 0.028282 80.861 80.839 80.867 3.5221 0.10495 0.00020576 NaN 23.148 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 78265 31296 12395 19911 19922 0.007558151084367637 PPPGGARR 8 Unmodified _PPPGGARR_ 0 0 0 ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF MSMS UPN46_class_I_Rep_3 1 404.2327880859375 2 404.232836 806.45112 NaN NaN NaN NaN NaN NaN NaN 79.352 1 79.352 78.852 79.852 0 0 0 0 0.40404 1 18637 18637 5.2307 0 1 31297 7111 19912 19923 35971 35971 0.04015201851461825 PPPHPKVK 8 Unmodified _PPPHPKVK_ 0 0 0 REV__ENSG00000111727|ENST00000229330|HCFC2 REV__ENSG00000111727|ENST00000229330|HCFC2 MSMS UPN47_class_I_Rep_2 3 450.27447509765625 2 450.276712 898.538872 NaN NaN NaN NaN NaN NaN NaN 85.779 1 89.212 88.712 89.712 3.4329 0 0 0 0.40738 1 21341 21341 0.79363 0.10326 1 + 31298 18463 19913 19924 35972 35972 0.08554402722222676 PPPHRYDWC 9 Unmodified _PPPHRYDWC_ 0 0 0 REV__AluSx1_dup33945|chr5:172116587-172116888:+|1.218346850411684|0.0183556741578834|6.05|151.0|14|1|anti-sense REV__AluSx1_dup33945|chr5:172116587-172116888:+|1.218346850411684|0.0183556741578834|6.05|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 585.7623901367188 2 585.761101 1169.50765 NaN NaN NaN NaN NaN NaN NaN 111.37 1 114.94 114.44 115.44 3.572 0 0 0 0.39428 1 27470 27470 2.0598 0.40713 1 + 31299 17175 19914 19925 35973 35973 -0.07032538374164687 PPPKQLDVIL 10 Unmodified _PPPKQLDVIL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 MULTI-SECPEP UPN48_class_I_Rep_3 7 559.8950805664062 2 560.342249 1118.66995 0.41863 0.00023458 -1.3228 -0.0007412 -0.90413 -0.00050662 560.3419443872831 107.95 0.15619 111.63 111.5 111.66 3.6813 19 16 2 0 0 0 0.84575 1 25476 25476 10.074 2.1638 1 1840100 + 31300 19043 19915 19926 35974 35974 0.11535748579603933 PPPKQLDVIL 10 Unmodified _PPPKQLDVIL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 MULTI-MATCH UPN47_class_I_Rep_2 3 2 560.342249 1118.66995 0.63473 0.00035567 -1.5641 -0.00087643 -0.92936 -0.00052076 560.3414554707634 108.13 0.088974 111.66 111.63 111.72 3.5333 -0.02602 -0.00011712 NaN 10.074 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 809980 + 31301 19043 19915 19926 0.11535748579603933 PPPKQLDVIL 10 Unmodified _PPPKQLDVIL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 MULTI-MATCH UPN47_class_I_Rep_3 4 2 560.342249 1118.66995 0.50386 0.00028233 -0.93666 -0.00052485 -0.4328 -0.00024252 560.8426412660835 108.21 0.058197 111.75 111.7 111.76 3.5382 0.061829 0.00058604 NaN 10.074 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1824800 + 31302 19043 19915 19926 0.11535748579603933 PPPKQLDVIL 10 Unmodified _PPPKQLDVIL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 REV__nc|ENSG00000132972|Q9BXT8-1|RNF17 MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.342249 1118.66995 0.49458 0.00027713 -1.5182 -0.00085071 -1.0236 -0.00057358 560.3418527924971 108.03 0.11688 111.71 111.59 111.71 3.6746 0.020768 -6.5685E-05 NaN 10.074 17 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1284500 + 31303 19043 19915 19926 0.11535748579603933 PPPLHDYF 8 Unmodified _PPPLHDYF_ 0 0 0 REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|61|3|anti-sense REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_1 5 493.24285888671875 2 493.242535 984.470518 NaN NaN NaN NaN NaN NaN NaN 32.363 1 35.89 35.39 36.39 3.5266 0 0 0 0.40738 1 4913 4913 0.79363 0 1 + 31304 29181 19916 19927 35975 35975 -0.022338866482982667 PPPLKHLC 8 Unmodified _PPPLKHLC_ 0 0 0 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 MSMS UPN47_class_I_Rep_1 2 452.7569580078125 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 17.549 1 21.1 20.6 21.6 3.5504 0 0 0 0.40738 1 1326 1326 0.79363 0 1 31305 3498 19917 19928 35976 35976 0.04443354096179064 PPPLKQLLGF 10 Unmodified _PPPLKQLLGF_ 0 0 0 REV__nc|ENSG00000188779|P84550-2|SKOR1 REV__nc|ENSG00000188779|P84550-2|SKOR1 MSMS UPN47_class_I_Rep_3 4 555.3373413085938 2 555.33951 1108.66447 NaN NaN NaN NaN NaN NaN NaN 106.35 1 109.89 109.39 110.39 3.5367 0 0 0 0.53105 1 26004 26004 1.8442 0 1 + 31306 20984 19918 19929 35977 35977 0.11448069787797976 PPPLSTIK 8 Unmodified _PPPLSTIK_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MULTI-SECPEP UPN48_class_I_Rep_3 7 426.2460021972656 2 426.763104 851.511654 0.16165 6.8986E-05 -2.5073 -0.00107 -2.3457 -0.001001 426.7611360552965 78.544 0.031006 82.165 82.142 82.173 3.6216 5 3 2 0 0 0 0.72333 1 18592 18592 0 0 1 28981 + 31307 20149 19919 19930 35978 35978 0.07995874391178859 PPPPGRPR 8 Unmodified _PPPPGRPR_ 0 0 0 REV__ENST00000525207.1_1_11:65824747-65825957:+|nuORF REV__ENST00000525207.1_1_11:65824747-65825957:+|nuORF MSMS UPN48_class_I_Rep_3 7 437.2672424316406 2 437.256311 872.49807 NaN NaN NaN NaN NaN NaN NaN 51.339 1 54.949 54.449 55.449 3.6105 0 0 0 0.40404 1 10511 10511 5.2307 0 1 + 31308 17980 19920 19931 35979 35979 0.056720614025948635 PPPPGTTMESI 11 Unmodified _PPPPGTTMESI_ 0 0 0 REV__ENSG00000006611|ENST00000005226|USH1C REV__ENSG00000006611|ENST00000005226|USH1C MSMS UPN47_class_I_Rep_1 2 563.7781372070312 2 563.776082 1125.53761 NaN NaN NaN NaN NaN NaN NaN 54.301 1 57.803 57.303 58.303 3.5014 0 0 0 0.38417 1 12238 12238 5.2969 1.7004 1 + 31309 17539 19921 19932 35980 35980 -0.02013644219505295 PPPTARRG 8 Unmodified _PPPTARRG_ 0 0 0 HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|294|3|anti-sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|294|3|anti-sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|294|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 426.2459716796875 2 426.245944 850.477334 0.10706 4.5635E-05 0.06134 2.6146E-05 0.1684 7.1781E-05 426.2459587693193 81.81 0.88867 81.81 81.383 82.272 0 198 85 3 0 0 0 0.82752 1 19359 19359 7.9102 0 1 3196000 31310 8106 19922 19933 35981 35981 0.046114710229517186 PPPTARRG 8 Unmodified _PPPTARRG_ 0 0 0 HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|294|3|anti-sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|294|3|anti-sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|294|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 426.245944 850.477334 0.077215 3.2912E-05 -0.0011648 -4.9647E-07 0.07605 3.2416E-05 426.24592223851135 78.227 0.77901 81.85 81.533 82.312 3.6222 -0.042557 -2.4801E-05 NaN 7.9102 216 91 3 NaN NaN NaN NaN 0 NaN NaN 0 799010 31311 8106 19922 19933 0.046114710229517186 PPPVKWLA 8 Unmodified _PPPVKWLA_ 0 0 0 REV__L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense REV__L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense MSMS UPN47_class_I_Rep_3 4 454.27093505859375 2 454.273638 906.532724 NaN NaN NaN NaN NaN NaN NaN 28.981 1 32.305 31.805 32.805 3.3235 0 0 0 0.40738 1 4621 4621 0.79363 0 1 + 31312 30338 19923 19934 35982 35982 0.07571884490687353 PPPVRRGA 8 Unmodified _PPPVRRGA_ 0 0 0 nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 MULTI-MSMS UPN47_class_I_Rep_1 2 425.2566223144531 2 425.256311 848.49807 0.11797 5.0166E-05 0.28813 0.00012253 0.40609 0.00017269 425.2564232004836 107.43 0.13329 111.11 111.05 111.19 3.6724 30 18 2 0 0 0 0.82752 1 26325 26325 12.532 7.7755 1 1815200 31313 2796 19924 19935 35983 35983 0.06776061402615596 PPPVRRGA 8 Unmodified _PPPVRRGA_ 0 0 0 nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 MSMS UPN47_class_I_Rep_3 4 425.25677490234375 2 425.256311 848.49807 NaN NaN NaN NaN NaN NaN NaN 107.43 1 110.97 110.47 111.47 3.5382 0 0 0 0.388 1 26234 26234 12.532 7.7755 1 31314 2796 19924 19935 35984 35984 0.06776061402615596 PPPVRRGA 8 Unmodified _PPPVRRGA_ 0 0 0 nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 MULTI-MSMS UPN48_class_I_Rep_2 6 425.2564392089844 2 425.256311 848.49807 0.082151 3.4935E-05 0.19327 8.2188E-05 0.27542 0.00011712 425.2563762381349 107.5 0.1199 111.17 111.07 111.19 3.6783 26 16 2 0 0 0 0.82752 1 25399 25399 12.532 12.532 1 3213500 31315 2796 19924 19935 35985 35985 0.06776061402615596 PPPVRRGA 8 Unmodified _PPPVRRGA_ 0 0 0 nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 MULTI-MSMS UPN48_class_I_Rep_3 7 425.25579833984375 2 425.256311 848.49807 0.11865 5.0458E-05 -0.30081 -0.00012792 -0.18216 -7.7465E-05 425.25620644484815 107.49 0.11777 111.17 111.09 111.2 3.6813 19 12 2 0 0 0 0.82752 1 25341 25341 12.532 7.3009 1 2743900 31316 2796 19924 19935 35986 35986 0.06776061402615596 PPPVRRGA 8 Unmodified _PPPVRRGA_ 0 0 0 nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 nc|ENSG00000133226|Q8IYB3-2|SRRM1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 425.256311 848.49807 -0.31184 -0.00013261 1.0578 0.00044985 0.74599 0.00031724 425.25679439847124 107.45 0.090279 110.99 110.92 111.01 3.5345 -0.1225 0.00073881 NaN 12.532 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2709300 31317 2796 19924 19935 0.06776061402615596 PPPWAQPQPD 10 Unmodified _PPPWAQPQPD_ 0 0 0 REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF MSMS UPN48_class_I_Rep_2 6 566.7761840820312 2 566.774731 1131.53491 NaN NaN NaN NaN NaN NaN NaN 34.002 1 37.662 37.162 38.162 3.6607 0 0 0 0.53105 1 5432 5432 1.6526 0.17072 1 + 31318 21073 19925 19936 35987 35987 -0.025597315621553207 PPPWSSFWGC 10 Unmodified _PPPWSSFWGC_ 0 0 0 REV__nc|ENSG00000153487|Q9UK53|ING1 REV__nc|ENSG00000153487|Q9UK53|ING1 MSMS UPN48_class_I_Rep_2 6 582.2527465820312 2 582.252577 1162.4906 NaN NaN NaN NaN NaN NaN NaN 42.844 1 46.602 46.102 47.102 3.7579 0 0 0 0.53105 1 7980 7980 1.4819 0 1 + 31319 32018 19926 19937 35988 35988 -0.0841445897997346 PPQIELRI 8 Unmodified _PPQIELRI_ 0 0 0 L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|51|3|sense L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|51|3|sense L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.29241943359375 2 483.292559 964.570566 -0.022184 -1.0722E-05 -0.18654 -9.0154E-05 -0.20873 -0.00010088 483.29235219714735 45.051 0.60691 48.406 48.223 48.83 3.3556 54 35 2 0 0 0 0.82752 1 9468 9468 3.9444 0.66309 1 92509 31320 13863 19927 19938 35989 35989 0.08686350685513844 PPQIELRI 8 Unmodified _PPQIELRI_ 0 0 0 L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|51|3|sense L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|51|3|sense L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|51|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.2923278808594 2 483.292559 964.570566 -0.090283 -4.3633E-05 -0.0866 -4.1853E-05 -0.17688 -8.5486E-05 483.29247237187593 45.222 0.64882 48.466 48.238 48.886 3.2441 63 42 2 0 0 0 0.82752 1 9514 9514 3.9444 0.66309 1 82506 31321 13863 19927 19938 35990 35990 0.08686350685513844 PPQKKTFTQST 11 Unmodified _PPQKKTFTQST_ 0 0 0 L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|68|2|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|68|2|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 421.5639343261719 3 421.562827 1261.66665 NaN NaN NaN NaN NaN NaN NaN 91.476 1 94.937 94.437 95.437 3.4613 0 0 0 0.38417 1 22640 22640 4.1166 1.6181 1 31322 14985 19928 19939 35991 35991 0.046284537349492894 PPQLAAPGRRA 11 Unmodified _PPQLAAPGRRA_ 0 0 0 REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.33056640625 2 567.330539 1132.64652 0.4626 0.00026245 -1.237 -0.00070181 -0.77444 -0.00043937 567.3297059552087 85.484 0.14737 85.484 85.444 85.592 0 24 17 2 0 0 0 0.65559 1 20392 20392 2.7352 0.23671 1 338710 + 31323 21479 19929 19940 35992 35992 0.0855074758567298 PPQLGLRPP 9 Unmodified _PPQLGLRPP_ 0 0 0 REV__ENST00000356994.6_1_8:144874301-144875165:-|nuORF REV__ENST00000356994.6_1_8:144874301-144875165:-|nuORF MSMS UPN46_class_I_Rep_3 1 487.7903747558594 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 91.419 1 91.419 90.919 91.919 0 0 0 0 0.38639 1 22083 22083 3.9444 0 1 + 31324 21871 19930 19941 35993 35993 0.0830577040536582 PPRFLLMIF 9 Unmodified _PPRFLLMIF_ 0 0 0 L1M4c_dup2351|chr10:42532257-42533535:+|1.2280819330149977|0.0688704271780339|4.16|151.0|75|3|anti-sense L1M4c_dup2351|chr10:42532257-42533535:+|1.2280819330149977|0.0688704271780339|4.16|151.0|75|3|anti-sense L1M4c_dup2351|chr10:42532257-42533535:+|1.2280819330149977|0.0688704271780339|4.16|151.0|75|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.3309936523438 2 567.33063 1132.64671 0.48453 0.00027489 -0.34603 -0.00019632 0.1385 7.8573E-05 567.330212093525 81.861 0.48072 85.518 85.316 85.797 3.6567 78 61 2 0 0 0 0.50015 1 19436 19436 0.6015 0 1 113700 31325 9047 19931 19942 35994 35994 0.08569031261276905 PPRIVLLILK 10 Unmodified _PPRIVLLILK_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS UPN46_class_I_Rep_3 1 581.4063110351562 2 581.407727 1160.8009 NaN NaN NaN NaN NaN NaN NaN 108.71 1 108.71 108.21 109.21 0 0 0 0 0.53105 1 26605 26605 0.40072 0 1 + 31326 18608 19932 19943 35995 35995 0.2269318401831697 PPRKGRLTLH 10 Unmodified _PPRKGRLTLH_ 0 0 0 L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|66|2|sense L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|66|2|sense L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|66|2|sense MSMS UPN46_class_I_Rep_3 1 587.8601684570312 2 587.862006 1173.70946 NaN NaN NaN NaN NaN NaN NaN 96.385 1 96.385 95.885 96.885 0 0 0 0 0.53105 1 23436 23436 1.6526 0 1 31327 14397 19933 19944 35996 35996 0.12955313373686295 PPRLHRKI 8 Unmodified _PPRLHRKI_ 0 0 0 ENST00000379938.6_3_6:7250695-7251052:+|nuORF ENST00000379938.6_3_6:7250695-7251052:+|nuORF ENST00000379938.6_3_6:7250695-7251052:+|nuORF MSMS UPN47_class_I_Rep_3 4 509.2478942871094 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 64.477 1 67.651 67.151 68.151 3.1741 0 0 0 0.40746 1 15422 15422 0.69038 0 1 31328 6484 19934 19945 35997 35997 0.1331227414480054 PPRPAMLLSVP 11 Unmodified _PPRPAMLLSVP_ 0 0 0 ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF ENST00000590325.1_1_19:13049472-13051084:+|nuORF ENST00000590325.1_1_19:13049472-13051084:+|nuORF MSMS UPN47_class_I_Rep_1 2 589.3430786132812 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 84.866 1 88.458 87.958 88.958 3.5914 0 0 0 0.38417 1 21216 21216 4.5289 0.93237 1 31329 7609 19935 19946 35998 35998 0.08763210939059718 PPRPQEVL 8 Unmodified _PPRPQEVL_ 0 0 0 REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 468.26934814453125 2 468.269084 934.523616 0.11649 5.4549E-05 -0.20759 -9.7207E-05 -0.091097 -4.2658E-05 468.2689626172929 57.044 0.40843 60.587 60.456 60.864 3.5427 61 40 2 0 0 0 0.82752 1 12198 12198 4.3292 0 1 161490 + 31330 21806 19936 19947 35999 35999 0.05373491134378128 PPRQDFVY 8 Unmodified _PPRQDFVY_ 0 0 0 nc|ENSG00000142303|Q9H324|ADAMTS10;ENSG00000142303|ENST00000597188|ADAMTS10 nc|ENSG00000142303|Q9H324|ADAMTS10 nc|ENSG00000142303|Q9H324|ADAMTS10 MULTI-MSMS UPN46_class_I_Rep_3 1 511.2592468261719 2 511.258717 1020.50288 0.27273 0.00013943 -0.038715 -1.9793E-05 0.23401 0.00011964 511.2587072706953 48.582 0.38848 48.582 48.404 48.793 0 57 40 2 0 0 0 0.82752 1 10114 10114 12.532 0.89125 1 157480 31331 3245 19937 19948 36000 36000 -0.006550992452957871 PPRRKRRQ 8 Unmodified _PPRRKRRQ_ 0 0 0 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 MSMS UPN47_class_I_Rep_2 3 547.3327026367188 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 95.449 1 98.924 98.424 99.424 3.4753 0 0 0 0.40625 1 23490 23490 2.3027 1.6124 1 31332 5318 19938 19949 36001 36001 0.13144695636560755 PPRRLHGF 8 Unmodified _PPRRLHGF_ 0 0 0 ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 490.2855529785156 2 490.28286 978.551168 0.36142 0.0001772 3.3478 0.0016414 3.7093 0.0018186 490.28552567495234 54.671 0.48775 57.99 57.787 58.275 3.3187 48 22 3 0 0 0 0.82752 2 12352 12352;12369 0.79363 0.10326 1 181160 31333 1723 19939 19950 36002;36003 36002 0.06103439185267234 PPRRLHGF 8 Unmodified _PPRRLHGF_ 0 0 0 ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron MSMS UPN48_class_I_Rep_1 5 490.27337646484375 2 490.28286 978.551168 NaN NaN NaN NaN NaN NaN NaN 66.84 1 70.292 69.792 70.792 3.4516 0 0 0 0.40604 1 15314 15314 2.5775 0.27475 1 31334 1723 19939 19950 36004 36004 0.06103439185267234 PPRSPAFPLA 10 Unmodified _PPRSPAFPLA_ 0 0 0 ENST00000262419.10_2_17:44269884-44269959:-|nuORF ENST00000262419.10_2_17:44269884-44269959:-|nuORF ENST00000262419.10_2_17:44269884-44269959:-|nuORF MSMS UPN48_class_I_Rep_2 6 526.7760620117188 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 19.705 1 23.355 22.855 23.855 3.6497 0 0 0 0.53105 1 1554 1554 1.4819 0.68827 1 31335 5968 19940 19951 36005 36005 0.05773753059816045 PPSFHEEF 8 Unmodified _PPSFHEEF_ 0 0 0 REV__LTR12C_dup1590|chr9:89479488-89480983:-|1.11316707604896|0.040373049518263|4.79|151.0|12|2|sense REV__LTR12C_dup1590|chr9:89479488-89480983:-|1.11316707604896|0.040373049518263|4.79|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 495.2200622558594 2 495.2218 988.429047 NaN NaN NaN NaN NaN NaN NaN 53.217 1 56.737 56.237 57.237 3.5192 0 0 0 0.40581 1 11147 11147 2.8892 0.31174 1 + 31336 30804 19941 19952 36006 36006 -0.06563067407614653 PPSGNRNPL 9 Unmodified _PPSGNRNPL_ 0 0 0 HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|25|3|sense HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|25|3|sense HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 476.254150390625 2 476.253966 950.493378 0.101 4.8104E-05 0.16518 7.8667E-05 0.26618 0.00012677 476.2540307723908 94.747 1.59 98.364 97.524 99.114 3.6167 289 196 2 0 0 0 0.46434 1 22898 22898 4.3292 0 1 238340 31337 8461 19942 19953 36007 36007 0.016151324691804803 PPSPQDGQRRA 11 Unmodified _PPSPQDGQRRA_ 0 0 0 REV__PABL_B-int_dup19|chr2:73756095-73756930:+|1.644490709449737|0.1531082817706699|3.43|151.0|47|2|anti-sense REV__PABL_B-int_dup19|chr2:73756095-73756930:+|1.644490709449737|0.1531082817706699|3.43|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_3 7 604.8091430664062 2 604.810168 1207.60578 NaN NaN NaN NaN NaN NaN NaN 95.229 1 99.131 98.631 99.631 3.9016 0 0 0 0.38417 1 22573 22573 1.1933 0.59184 1 + 31338 32154 19943 19954 36008 36008 0.010283614753916481 PPSPTYAILR 10 Unmodified _PPSPTYAILR_ 0 0 0 REV__ENST00000561871.1_2_15:42565903-42566409:+|nuORF REV__ENST00000561871.1_2_15:42565903-42566409:+|nuORF MSMS UPN48_class_I_Rep_3 7 557.81591796875 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 112.22 1 115.88 115.38 116.38 3.6614 0 0 0 0.53105 1 26657 26657 1.6526 0 1 + 31339 23032 19944 19955 36009 36009 0.06598004885699993 PPSRMGRLL 9 Unmodified _PPSRMGRLL_ 0 0 0 SVA_D_dup1191|chr16:89462044-89463693:+|1.91410847244654|0.1137538962256101|4.07|151.0|71|3|anti-sense SVA_D_dup1191|chr16:89462044-89463693:+|1.91410847244654|0.1137538962256101|4.07|151.0|71|3|anti-sense SVA_D_dup1191|chr16:89462044-89463693:+|1.91410847244654|0.1137538962256101|4.07|151.0|71|3|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7894897460938 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 71.698 1 75.164 74.664 75.664 3.466 0 0 0 0.38478 1 16781 16781 4.3292 0 1 31340 32851 19945 19956 36010 36010 0.06865215419247761 PPSVWYPF 8 Unmodified _PPSVWYPF_ 0 0 0 REV__L1ME3G_dup7164|chr7:102038333-102038547:+|1.1698295159039735|0.0028892116130163|8.66|151.0|16|2|anti-sense REV__L1ME3G_dup7164|chr7:102038333-102038547:+|1.1698295159039735|0.0028892116130163|8.66|151.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 496.74578857421875 2 496.747453 991.480354 NaN NaN NaN NaN NaN NaN NaN 16.022 1 16.022 15.522 16.522 0 0 0 0 0.40738 1 1019 1019 0.79363 0 1 + 31341 28204 19946 19957 36011 36011 -0.015726986429058343 PPSWGEYQS 9 Unmodified _PPSWGEYQS_ 0 0 0 REV__LTR2_dup115|chr2:181489841-181490300:-|1.5196228583105549|0.0345152087123198|5.46|150.0|30|2|anti-sense REV__LTR2_dup115|chr2:181489841-181490300:-|1.5196228583105549|0.0345152087123198|5.46|150.0|30|2|anti-sense MSMS UPN46_class_I_Rep_3 1 525.2720947265625 2 525.729989 1049.44543 NaN NaN NaN NaN NaN NaN NaN 114.49 1 114.49 113.99 114.99 0 0 0 0 0.39428 1 28300 28300 2.0598 0.21551 1 + 31342 30875 19947 19958 36012 36012 -0.07731986241515187 PPSYVRTGSG 10 Unmodified _PPSYVRTGSG_ 0 0 0 REV__ENST00000479509.1_1_6:37140348-37141864:+|nuORF REV__ENST00000479509.1_1_6:37140348-37141864:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 510.7588195800781 2 510.759081 1019.50361 0.1842 9.4082E-05 -0.14705 -7.5109E-05 0.037146 1.8973E-05 510.7588994954384 49.904 0.6291 53.525 53.255 53.884 3.621 48 38 2 0 0 0 0.56155 1 10177 10177 2.7352 0.43246 1 144190 + 31343 22557 19948 19959 36013 36013 -0.005363045962326396 PPTARQPPWR 10 Unmodified _PPTARQPPWR_ 0 0 0 ENST00000284878.11_1_21:18885283-18885484:+|nuORF ENST00000284878.11_1_21:18885283-18885484:+|nuORF ENST00000284878.11_1_21:18885283-18885484:+|nuORF MSMS UPN48_class_I_Rep_1 5 603.3283081054688 2 603.330539 1204.64652 NaN NaN NaN NaN NaN NaN NaN 49.527 1 53.051 52.551 53.551 3.5246 0 0 0 0.53105 1 10018 10018 1.4819 0 1 31344 6039 19949 19960 36014 36014 0.05238747585644887 PPTDRSSKPW 10 Unmodified _PPTDRSSKPW_ 0 0 0 REV__ENST00000415244.1_1_3:196729825-196730720:+|nuORF REV__ENST00000415244.1_1_3:196729825-196730720:+|nuORF MSMS UPN47_class_I_Rep_2 3 585.7977294921875 2 585.798737 1169.58292 NaN NaN NaN NaN NaN NaN NaN 57.01 1 60.311 59.811 60.811 3.3009 0 0 0 0.53105 1 13094 13094 1.1933 0.39971 1 + 31345 22215 19950 19961 36015 36015 0.0049134235789551894 PPTGQVWANLS 11 Unmodified _PPTGQVWANLS_ 0 0 0 L1MC4_dup21843|chr17:57343331-57344828:-|2.5454925928551946|0.0172435842062843|7.21|151.0|39|3|sense L1MC4_dup21843|chr17:57343331-57344828:-|2.5454925928551946|0.0172435842062843|7.21|151.0|39|3|sense L1MC4_dup21843|chr17:57343331-57344828:-|2.5454925928551946|0.0172435842062843|7.21|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 585.3004150390625 2 585.301113 1168.58767 NaN NaN NaN NaN NaN NaN NaN 66.516 1 69.774 69.274 70.274 3.2588 0 0 0 0.38417 1 15986 15986 2.4985 0.19575 1 31346 11461 19951 19962 36016 36016 0.010122265006430098 PPTKGHGEMVF 11 Unmodified _PPTKGHGEMVF_ 0 0 0 REV__ENSG00000100354.21,TNRC6B,chr22,+,I3.1,40117129,40125771|57|9.64|2|intron REV__ENSG00000100354.21,TNRC6B,chr22,+,I3.1,40117129,40125771|57|9.64|2|intron MSMS UPN47_class_I_Rep_1 2 600.297119140625 2 600.297516 1198.58048 NaN NaN NaN NaN NaN NaN NaN 67.064 1 70.425 69.925 70.925 3.3611 0 0 0 0.38417 1 16104 16104 1.1933 0.50296 1 + 31347 18110 19952 19963 36017 36017 -0.010868293714111132 PPTKVLIL 8 Unmodified _PPTKVLIL_ 0 0 0 L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|36|1|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|36|1|anti-sense L1MB3_dup12137|chr12:120872759-120873594:+|3.91961232202164|0.0173722009353145|7.82|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79949951171875 2 440.796946 879.57934 -0.35042 -0.00015446 3.0462 0.0013428 2.6958 0.0011883 440.799474291978 65.853 0.99292 69.039 68.639 69.632 3.1853 93 65 2 0 0 0 0.82752 1 15906 15906 0.79363 0 1 112120 31348 10326 19953 19964 36018 36018 0.1347332432201256 PPTLNLLTGT 10 Unmodified _PPTLNLLTGT_ 0 0 0 AluJb_dup108044|chr17:44461692-44461999:-|1.1075880458288034|0.0350555433368045|4.98|151.0|16|1|anti-sense AluJb_dup108044|chr17:44461692-44461999:-|1.1075880458288034|0.0350555433368045|4.98|151.0|16|1|anti-sense AluJb_dup108044|chr17:44461692-44461999:-|1.1075880458288034|0.0350555433368045|4.98|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7958374023438 2 513.795132 1025.57571 NaN NaN NaN NaN NaN NaN NaN 59.509 1 62.989 62.489 63.489 3.4801 0 0 0 0.53105 1 13082 13082 2.4985 0.19575 1 31349 11 19954 19965 36019 36019 0.06394609757489889 PPTPLVLD 8 Unmodified _PPTPLVLD_ 0 0 0 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 MSMS UPN48_class_I_Rep_1 5 426.24591064453125 2 426.247286 850.48002 NaN NaN NaN NaN NaN NaN NaN 84.067 1 87.664 87.164 88.164 3.5973 0 0 0 0.40364 1 20121 20121 5.7604 3.1829 1 + 31350 19815 19955 19966 36020 36020 0.04879881637236849 PPTRSRGRRR 10 Unmodified _PPTRSRGRRR_ 0 0 0 REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2 REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2 MSMS UPN48_class_I_Rep_1 5 619.8681640625 2 619.868686 1237.72282 NaN NaN NaN NaN NaN NaN NaN 98.33 1 101.94 101.44 102.44 3.6065 0 0 0 0.53105 1 23729 23729 1.4819 0 1 + 31351 20249 19956 19967 36021 36021 0.11346564205632603 PPTRSRGRRR 10 Unmodified _PPTRSRGRRR_ 0 0 0 REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2 REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2 MSMS UPN48_class_I_Rep_2 6 619.8693237304688 2 619.868686 1237.72282 NaN NaN NaN NaN NaN NaN NaN 98.063 1 101.84 101.34 102.34 3.779 0 0 0 0.53105 1 23296 23296 1.4819 0 1 + 31352 20249 19956 19967 36022 36022 0.11346564205632603 PPTSLLLLL 9 Unmodified _PPTSLLLLL_ 0 0 0 REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF MSMS UPN47_class_I_Rep_1 2 483.9811096191406 2 483.815336 965.616119 NaN NaN NaN NaN NaN NaN NaN 75.637 1 79.04 78.54 79.54 3.4034 0 0 0 0.4029 1 18680 18680 0 0 1 + 31353 18899 19957 19968 36023 36023 0.1319357614792125 PPTSLLLLL 9 Unmodified _PPTSLLLLL_ 0 0 0 REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF MSMS UPN47_class_I_Rep_1 2 483.6461181640625 2 483.815336 965.616119 NaN NaN NaN NaN NaN NaN NaN 106.52 1 110.23 109.73 110.73 3.7088 0 0 0 0.4029 1 26113 26113 0 0 1 + 31354 18899 19957 19968 36024 36024 0.1319357614792125 PPTSLLLLL 9 Unmodified _PPTSLLLLL_ 0 0 0 REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF MSMS UPN47_class_I_Rep_2 3 483.6466369628906 2 483.815336 965.616119 NaN NaN NaN NaN NaN NaN NaN 75.737 1 79.058 78.558 79.558 3.3216 0 0 0 0.4029 1 18716 18716 0 0 1 + 31355 18899 19957 19968 36025 36025 0.1319357614792125 PPTSLLLLL 9 Unmodified _PPTSLLLLL_ 0 0 0 REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF MSMS UPN47_class_I_Rep_2 3 483.981201171875 2 483.815336 965.616119 NaN NaN NaN NaN NaN NaN NaN 80.24 1 83.609 83.109 84.109 3.3694 0 0 0 0.4029 1 19985 19985 0 0 1 + 31356 18899 19957 19968 36026 36026 0.1319357614792125 PPTSLLLLL 9 Unmodified _PPTSLLLLL_ 0 0 0 REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF MSMS UPN47_class_I_Rep_3 4 483.6464538574219 2 483.815336 965.616119 NaN NaN NaN NaN NaN NaN NaN 86.758 1 90.138 89.638 90.638 3.3801 0 0 0 0.4029 1 21743 21743 0 0 1 + 31357 18899 19957 19968 36027 36027 0.1319357614792125 PPTVAELV 8 Unmodified _PPTVAELV_ 0 0 0 ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B MULTI-SECPEP UPN47_class_I_Rep_3 4 412.7461242675781 2 413.239461 824.46437 -0.65031 -0.00026874 -2.6858 -0.0011099 -3.3361 -0.0013786 413.23836165628813 75.907 0.062325 79.165 79.137 79.199 3.2573 7 4 2 0 0 0 0.72333 1 18858 18858 5.2307 0 1 133060 31358 4370 19958 19969 36028 36028 0.045115951201864846 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.282470703125 2 474.28166 946.548768 0.25162 0.00011934 1.9221 0.00091162 2.1737 0.001031 474.28211753348285 108.96 0.50828 108.96 108.88 109.38 0 93 33 3 0 0 0 0.40174 1 26806 26806 7.9102 0 1 80891000 + 31359 29557 19959 19970 36029 36029 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2821960449219 2 474.28166 946.548768 0.25156 0.00011931 1.676 0.0007949 1.9276 0.0009142 474.28215654630094 110.2 0.28419 110.2 110.11 110.4 0 91 26 5 0 0 0 0.40174 1 27125 27125 7.9102 2.6795 1 6915100 + 31360 29557 19959 19970 36030 36030 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 474.28240966796875 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 108.71 1 112.35 111.85 112.85 3.6355 0 0 0 0.28335 1 26739 26739 11.64 4.3511 1 + 31361 29557 19959 19970 36031 36031 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 474.28228759765625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 108.85 1 112.49 111.99 112.99 3.6355 0 0 0 0.28335 1 26801 26801 11.64 4.3511 1 + 31362 29557 19959 19970 36032 36032 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 474.2822265625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.37 1 112.97 112.47 113.47 3.6046 0 0 0 0.2088 1 26973 26973 15.847 9.124 1 + 31363 29557 19959 19970 36033 36033 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 474.28228759765625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.49 1 113.09 112.59 113.59 3.6046 0 0 0 0.35339 1 27013 27013 7.9102 0.62092 1 + 31364 29557 19959 19970 36034 36034 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN48_class_I_Rep_1 5 474.2825012207031 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 110.73 1 114.37 113.87 114.87 3.6326 0 0 0 0.38478 1 26873 26873 4.3292 1.7518 1 + 31365 29557 19959 19970 36035 36035 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 474.2822265625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.32 1 113 112.5 113.5 3.6715 0 0 0 0.35339 1 26022 26022 7.9102 0 1 + 31366 29557 19959 19970 36036 36036 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 474.2823486328125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.45 1 113.12 112.62 113.62 3.6715 0 0 0 0.28335 1 26057 26057 11.64 6.8843 1 + 31367 29557 19959 19970 36037 36037 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 474.282470703125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.57 1 113.25 112.75 113.75 3.6715 0 0 0 0.2088 1 26089 26089 15.847 8.558 1 + 31368 29557 19959 19970 36038 36038 0.07335545936962262 PPTVVPPQL 9 Unmodified _PPTVVPPQL_ 0 0 0 REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense REV__L1PA3_dup6605|chrX:78262409-78264794:-|2.721654890591989|0.0902154190155243|4.91|147.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 474.28204345703125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.95 1 113.62 113.12 114.12 3.6715 0 0 0 0.38478 1 26181 26181 4.3292 1.7518 1 + 31369 29557 19959 19970 36039 36039 0.07335545936962262 PPVEGDGWLK 10 Unmodified _PPVEGDGWLK_ 0 0 0 nc|ENSG00000230223|P0DMR3|ATXN8OS nc|ENSG00000230223|P0DMR3|ATXN8OS nc|ENSG00000230223|P0DMR3|ATXN8OS MULTI-MSMS UPN48_class_I_Rep_1 5 549.28564453125 2 549.284931 1096.55531 0.49724 0.00027313 1.5007 0.00082431 1.9979 0.0010974 549.28573901992 38.927 0.684 42.432 42.205 42.889 3.5048 75 60 2 0 0 0 0.54466 1 6839 6839 6.2058 1.8765 1 143270 31370 16831 19960 19971 36040 36040 0.010894390976545765 PPVFQVRP 8 Unmodified _PPVFQVRP_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS UPN48_class_I_Rep_3 7 470.2747802734375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 55.172 1 58.728 58.228 59.228 3.5554 0 0 0 0.40738 1 11670 11670 0.79363 0 1 31371 5782 19961 19972 36041 36041 0.062060988596158495 PPVGAESYIEA 11 Unmodified _PPVGAESYIEA_ 0 0 0 REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 566.427490234375 2 566.779679 1131.5448 0.47343 0.00026833 -0.56627 -0.00032095 -0.092849 -5.2625E-05 566.7794758769138 68.157 0.5775 71.609 71.282 71.86 3.4517 86 47 2 0 0 0 22.551 1 15680 15680 5.7319 5.7319 1 209990 + 31372 19427 19962 19973 36042 36042 -0.015705883474311122 PPVGAESYIEA 11 Unmodified _PPVGAESYIEA_ 0 0 0 REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 566.7796020507812 2 566.779679 1131.5448 0.50278 0.00028497 -0.51133 -0.00028981 -0.008546 -4.8437E-06 566.7794852432766 67.882 0.59444 71.39 71.096 71.691 3.5077 96 55 2 0 0 0 0.57992 1 15485 15485 5.7319 0.97584 1 247640 + 31373 19427 19962 19973 36043 36043 -0.015705883474311122 PPVGAESYIEA 11 Unmodified _PPVGAESYIEA_ 0 0 0 REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 566.779679 1131.5448 0.47829 0.00027109 -2.2093 -0.0012522 -1.731 -0.00098109 566.7798977962133 67.782 0.091568 71.233 71.191 71.282 3.4517 -0.078201 -0.0019026 NaN 5.7319 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 41590 + 31374 19427 19962 19973 -0.015705883474311122 PPVGAESYIEA 11 Unmodified _PPVGAESYIEA_ 0 0 0 REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF REV__ENST00000491436.1_1_1:165638124-165649867:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 566.779679 1131.5448 0.50278 0.00028497 -0.51133 -0.00028981 -0.008546 -4.8437E-06 566.7794852432766 67.882 0.59444 71.39 71.096 71.691 3.5077 0.078201 2.2115E-05 NaN 5.7319 96 55 2 NaN NaN NaN NaN 0 NaN NaN 0 247640 + 31375 19427 19962 19973 -0.015705883474311122 PPVGARRT 8 Unmodified _PPVGARRT_ 0 0 0 REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 427.2538757324219 2 427.253769 852.492984 0.11222 4.7947E-05 -0.18114 -7.7392E-05 -0.068918 -2.9445E-05 427.25375335724 82.188 0.72058 82.188 81.895 82.616 0 167 65 3 0 0 0 0.82752 2 19451 19451;19536 4.3292 0 1 1312500 + 31376 24267 19963 19974 36044;36045 36044 0.0608375753998871 PPVGARRT 8 Unmodified _PPVGARRT_ 0 0 0 REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 427.253769 852.492984 0.032513 1.3891E-05 -0.0067629 -2.8895E-06 0.02575 1.1002E-05 427.2536733558749 79.087 1.0909 82.533 82.046 83.137 3.4456 0.13931 2.5978E-05 NaN 4.3292 176 101 2 NaN NaN NaN NaN 0 NaN NaN 0 281880 + 31377 24267 19963 19974 0.0608375753998871 PPVGARRT 8 Unmodified _PPVGARRT_ 0 0 0 REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 427.253769 852.492984 -0.065999 -2.8198E-05 0.13044 5.5732E-05 0.064443 2.7534E-05 427.25374554072835 78.888 0.90681 82.423 82.012 82.919 3.5352 0.02978 0.00014322 NaN 4.3292 247 113 3 NaN NaN NaN NaN 0 NaN NaN 0 457360 + 31378 24267 19963 19974 0.0608375753998871 PPVGARRT 8 Unmodified _PPVGARRT_ 0 0 0 REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 427.253769 852.492984 0.078085 3.3362E-05 -0.080692 -3.4476E-05 -0.0026066 -1.1137E-06 427.2536338527308 78.779 1.1099 82.412 81.987 83.097 3.6331 0.019018 -3.7194E-05 NaN 4.3292 265 131 3 NaN NaN NaN NaN 0 NaN NaN 0 500860 + 31379 24267 19963 19974 0.0608375753998871 PPVGARRT 8 Unmodified _PPVGARRT_ 0 0 0 REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense REV__L1M2a1_dup45|chr7:135157124-135159289:-|2.1070966062105154|0.4401143228583212|2.26|151.0|79|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 427.253769 852.492984 0.16205 6.9236E-05 -0.11249 -4.806E-05 0.049565 2.1177E-05 427.2536092228015 78.789 1.1767 82.41 81.961 83.138 3.6215 0.017292 -6.4362E-05 NaN 4.3292 260 142 3 NaN NaN NaN NaN 0 NaN NaN 0 520000 + 31380 24267 19963 19974 0.0608375753998871 PPVKRPPKKT 10 Unmodified _PPVKRPPKKT_ 0 0 0 REV__ENST00000451648.1_1_20:61294700-61297915:-|nuORF REV__ENST00000451648.1_1_20:61294700-61297915:-|nuORF MSMS UPN46_class_I_Rep_3 1 574.3687133789062 2 574.369133 1146.72371 NaN NaN NaN NaN NaN NaN NaN 12.648 1 12.648 12.148 13.148 0 0 0 0 0.53105 1 166 166 1.3295 0.80477 1 + 31381 22192 19964 19975 36046 36046 0.15621965801983606 PPVLLQGAAR 10 Unmodified _PPVLLQGAAR_ 0 0 0 REV__ENST00000538595.1_1_11:63916459-63933466:-|nuORF REV__ENST00000538595.1_1_11:63916459-63933466:-|nuORF MSMS UPN47_class_I_Rep_1 2 511.310791015625 2 511.311284 1020.60801 NaN NaN NaN NaN NaN NaN NaN 112.4 1 115.97 115.47 116.47 3.572 0 0 0 0.53105 1 27717 27717 1.4819 0.79152 1 + 31382 19057 19965 19976 36047 36047 0.09853441951133846 PPVLSKKAI 9 Unmodified _PPVLSKKAI_ 0 0 0 REV__MSTB1_dup3272|chr12:11725575-11726002:+|2.7452605149972387|0.0102264103851315|8.07|151.0|10|2|sense REV__MSTB1_dup3272|chr12:11725575-11726002:+|2.7452605149972387|0.0102264103851315|8.07|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 476.8154602050781 2 476.813128 951.611703 NaN NaN NaN NaN NaN NaN NaN 26.582 1 30.149 29.649 30.649 3.5667 0 0 0 0.4007 1 3287 3287 0.52476 0 1 + 31383 31902 19966 19977 36048 36048 0.13396111724989623 PPVSSHPLD 9 Unmodified _PPVSSHPLD_ 0 0 0 ENSG00000197386|ENST00000355072|HTT;ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|1|intron;ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|3|intron;ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|2|intron ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MSMS UPN47_class_I_Rep_3 4 474.74322509765625 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 24.116 1 27.466 26.966 27.966 3.3509 0 0 0 0.35339 1 3183 3183 7.9102 2.1497 1 31384 5368 19967 19978 36049 36049 -0.004590919992324416 PPVSYQQEGL 10 Unmodified _PPVSYQQEGL_ 0 0 0 REV__nc|ENSG00000184937|P19544-9|WT1 REV__nc|ENSG00000184937|P19544-9|WT1 MULTI-MSMS UPN48_class_I_Rep_3 7 559.2799682617188 2 559.279846 1116.54514 0.32994 0.00018453 -0.32616 -0.00018242 0.0037764 2.1121E-06 559.2796423741614 42.296 0.63039 45.937 45.644 46.274 3.6415 84 56 2 0 0 0 0.56309 1 7692 7692 1.6526 0.32309 1 141530 + 31385 20836 19968 19979 36050 36050 -0.00847168627569772 PPVTSTKI 8 Unmodified _PPVTSTKI_ 0 0 0 REV__nc|ENSG00000213676|Q99941-2|ATF6B REV__nc|ENSG00000213676|Q99941-2|ATF6B MSMS UPN47_class_I_Rep_2 3 421.75067138671875 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 67.26 1 70.524 70.024 71.024 3.2636 0 0 0 0.40738 1 16210 16210 0.79363 0 1 + 31386 21251 19969 19980 36051 36051 0.06383284011508294 PPWAILEL 8 Unmodified _PPWAILEL_ 0 0 0 REV__MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|44|2|anti-sense REV__MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 469.76812744140625 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 29.671 1 32.994 32.494 33.494 3.3235 0 0 0 0.40364 1 4828 4828 5.7604 0 1 + 31387 31427 19970 19981 36052 36052 0.056041609082285504 PPWAIRAK 8 Unmodified _PPWAIRAK_ 0 0 0 AluSp_dup45091|chr19:4913808-4914125:-|1.6017989105344173|0.0894723411631557|4.16|151.0|3|1|sense AluSp_dup45091|chr19:4913808-4914125:-|1.6017989105344173|0.0894723411631557|4.16|151.0|3|1|sense AluSp_dup45091|chr19:4913808-4914125:-|1.6017989105344173|0.0894723411631557|4.16|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 470.2652282714844 2 469.782162 937.549771 NaN NaN NaN NaN NaN NaN NaN 38.838 1 42.493 41.993 42.993 3.6557 0 0 0 0.40738 1 6722 6722 0.79363 0 1 31388 237 19971 19982 36053 36053 0.07849805096509499 PPWPPLLVPGE 11 Unmodified _PPWPPLLVPGE_ 0 0 0 REV__L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|201|1|anti-sense REV__L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|201|1|anti-sense MSMS UPN46_class_I_Rep_3 1 601.336181640625 2 601.334424 1200.6543 NaN NaN NaN NaN NaN NaN NaN 50.08 1 50.08 49.58 50.58 0 0 0 0 0.38417 1 10565 10565 1.4819 0.28856 1 + 31389 30466 19972 19983 36054 36054 0.06199462062568273 PPWTARKI 8 Unmodified _PPWTARKI_ 0 0 0 LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|12|3|sense LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|12|3|sense LTR8_dup2960|chr17:4926618-4927062:-|1.0315024279847984|0.3463245784656745|1.57|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 484.7872314453125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 36.755 1 40.418 39.918 40.918 3.663 0 0 0 0.40604 1 6117 6117 2.5775 1.7838 1 31390 15714 19973 19984 36055 36055 0.07525787750932977 PPYALYIY 8 Unmodified _PPYALYIY_ 0 0 0 L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|182|3|anti-sense L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|182|3|anti-sense L1PB1_dup3260|chr4:89777949-89780976:+|1.181928889797098|0.035995208574536|5.04|146.0|182|3|anti-sense MSMS UPN47_class_I_Rep_2 3 500.2608642578125 2 500.262936 998.51132 NaN NaN NaN NaN NaN NaN NaN 27.544 1 31.043 30.543 31.543 3.4986 0 0 0 0.4032 1 4151 4151 6.3541 1.1234 1 31391 15082 19974 19985 36056 36056 0.012004546713228592 PPYFSIDH 8 Unmodified _PPYFSIDH_ 0 0 0 REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|307|3|anti-sense REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|307|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.23150634765625 2 488.232168 974.449782 NaN NaN NaN NaN NaN NaN NaN 73.568 1 77.146 76.646 77.646 3.5779 0 0 0 0.40604 1 17278 17278 2.5775 0 1 + 31392 29452 19975 19986 36057 36057 -0.03846477027968831 PPYFVTEL 8 Unmodified _PPYFVTEL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN46_class_I_Rep_3 1 483.25177001953125 2 483.252569 964.490584 0.078557 3.7963E-05 -0.65251 -0.00031533 -0.57396 -0.00027737 483.25218412663895 32.991 0.66002 32.991 32.583 33.243 0 76 47 2 0 0 0 0.82752 1 5693 5693 12.532 1.732 1 104440 31393 3707 19976 19987 36058 36058 0.006918642916502904 PPYLGSYVV 9 Unmodified _PPYLGSYVV_ 0 0 0 REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2 REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2 MSMS UPN46_class_I_Rep_3 1 497.76629638671875 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 63.119 1 63.119 62.619 63.619 0 0 0 0 0.39428 1 14155 14155 2.0598 0.21551 1 + 31394 20357 19977 19988 36059 36059 0.020115531830015243 PPYPFEGLER 10 Unmodified _PPYPFEGLER_ 0 0 0 REV__nc|ENSG00000140691|Q96C12-4|ARMC5 REV__nc|ENSG00000140691|Q96C12-4|ARMC5 MSMS UPN48_class_I_Rep_1 5 602.803955078125 2 602.803488 1203.59242 NaN NaN NaN NaN NaN NaN NaN 31.783 1 35.318 34.818 35.818 3.5342 0 0 0 0.53105 1 4746 4746 3.2813 0.28607 1 + 31395 31998 19978 19989 36060 36060 -0.0012288935661217693 PPYRYDRY 8 Unmodified _PPYRYDRY_ 0 0 0 REV__ENST00000532043.1_1_11:22294373-22299379:+|nuORF REV__ENST00000532043.1_1_11:22294373-22299379:+|nuORF MSMS UPN48_class_I_Rep_3 7 565.2760620117188 2 565.274898 1128.53524 NaN NaN NaN NaN NaN NaN NaN 116.31 1 119.94 119.44 120.44 3.6312 0 0 0 0.40738 1 27682 27682 0.79363 0.19213 1 + 31396 20418 19979 19990 36061 36061 -0.023883118423100314 PPYTLYKNQ 9 Unmodified _PPYTLYKNQ_ 0 0 0 L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|46|2|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|164|3|sense L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|46|2|sense L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|46|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.29296875 2 562.292756 1122.57096 0.60753 0.00034161 -0.94633 -0.00053211 -0.3388 -0.0001905 562.2921110017701 54.904 0.67421 58.46 58.152 58.826 3.5559 73 41 2 0 0 0 0.48643 1 11615 11615 2.0598 0 1 117820 31397 14732 19980 19991 36062 36062 0.014577256146822037 PQAFIVTLSSS 11 Unmodified _PQAFIVTLSSS_ 0 0 0 REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 575.3121948242188 2 575.311146 1148.60774 0.36607 0.0002106 1.1704 0.00067334 1.5365 0.00088395 575.3116977005935 50.294 0.78248 53.915 53.607 54.39 3.621 69 49 2 0 0 0 0.59712 1 10194 10194 5.2969 0.066215 1 277290 + 31398 28547 19981 19992 36063 36063 0.039379774406370416 PQAFIVTLSSS 11 Unmodified _PQAFIVTLSSS_ 0 0 0 REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 575.311146 1148.60774 0.41917 0.00024115 -0.72129 -0.00041497 -0.30212 -0.00017381 575.3104061005396 53.797 0.049606 53.797 53.753 53.803 0 -0.1918 -0.0022898 NaN 5.2969 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 103600 + 31399 28547 19981 19992 0.039379774406370416 PQAFIVTLSSS 11 Unmodified _PQAFIVTLSSS_ 0 0 0 REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 575.311146 1148.60774 0.47394 0.00027266 3.5431 0.0020384 4.017 0.002311 575.8152324092724 50.857 0.21383 54.195 54.063 54.277 3.3386 0.20686 0.0026168 NaN 5.2969 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 74149 + 31400 28547 19981 19992 0.039379774406370416 PQAFIVTLSSS 11 Unmodified _PQAFIVTLSSS_ 0 0 0 REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 575.311146 1148.60774 0.40754 0.00023446 1.3302 0.00076526 1.7377 0.00099972 575.3116639564272 50.475 0.73434 53.999 53.583 54.317 3.5246 0.010811 7.0626E-05 NaN 5.2969 86 49 2 NaN NaN NaN NaN 0 NaN NaN 0 246790 + 31401 28547 19981 19992 0.039379774406370416 PQAFIVTLSSS 11 Unmodified _PQAFIVTLSSS_ 0 0 0 REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense REV__L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|49|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 575.311146 1148.60774 0.36607 0.0002106 1.1704 0.00067334 1.5365 0.00088395 575.3116977005935 50.294 0.78248 53.915 53.607 54.39 3.621 -0.073096 -0.0001132 NaN 5.2969 69 49 2 NaN NaN NaN NaN 0 NaN NaN 0 277290 + 31402 28547 19981 19992 0.039379774406370416 PQAHLSGTWD 10 Unmodified _PQAHLSGTWD_ 0 0 0 REV__ENST00000433948.5_2_12:50185527-50185668:-|nuORF REV__ENST00000433948.5_2_12:50185527-50185668:-|nuORF MSMS UPN47_class_I_Rep_1 2 556.2744750976562 2 556.261988 1110.50942 NaN NaN NaN NaN NaN NaN NaN 67.508 1 70.869 70.369 71.369 3.3611 0 0 0 0.53105 1 16237 16237 3.2813 0.70383 1 + 31403 22306 19982 19993 36064 36064 -0.04141206084568694 PQALRVKRRLL 11 Unmodified _PQALRVKRRLL_ 0 0 0 REV__ENST00000587552.5_1_19:5708410-5719801:-|nuORF REV__ENST00000587552.5_1_19:5708410-5719801:-|nuORF MSMS UPN48_class_I_Rep_2 6 450.6343078613281 3 450.63325 1348.87792 NaN NaN NaN NaN NaN NaN NaN 40.439 1 44.18 43.68 44.68 3.7413 0 0 0 0.38417 1 7279 7279 0.08335 0.08335 1 + 31404 21031 19983 19994 36065 36065 0.2174379528735244 PQAPLKCLQT 10 Unmodified _PQAPLKCLQT_ 0 0 0 REV__ENST00000494929.5_1_22:20819888-20843498:-|nuORF REV__ENST00000494929.5_1_22:20819888-20843498:-|nuORF MSMS UPN48_class_I_Rep_2 6 549.803466796875 2 549.802434 1097.59032 NaN NaN NaN NaN NaN NaN NaN 98.8 1 102.57 102.07 103.07 3.7707 0 0 0 0.53105 1 23468 23468 3.2813 0.97858 1 + 31405 18075 19984 19995 36066 36066 0.045423586339666144 PQDDSKGK 8 Unmodified _PQDDSKGK_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 437.7148132324219 2 437.716882 873.41921 NaN NaN NaN NaN NaN NaN NaN 96.734 1 100.51 100.01 101.01 3.7767 0 0 0 0.40472 1 23980 23980 4.3292 0.73274 1 31406 7806 19985 19996 36067 36067 -0.02256255412999053 PQDDSKGK 8 Unmodified _PQDDSKGK_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 437.7147521972656 2 437.716882 873.41921 NaN NaN NaN NaN NaN NaN NaN 96.864 1 100.64 100.14 101.14 3.7767 0 0 0 0.40472 1 24013 24013 4.3292 1.7518 1 31407 7806 19985 19996 36068 36068 -0.02256255412999053 PQDDSKGK 8 Unmodified _PQDDSKGK_ 0 0 0 HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense HAL1_dup14967|chr10:96147362-96148157:-|2.190567416703674|0.2055083243007091|3.41|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 437.7156066894531 2 437.716882 873.41921 NaN NaN NaN NaN NaN NaN NaN 96.393 1 100.01 99.505 100.51 3.6124 0 0 0 0.40472 1 23221 23221 4.3292 1.7518 1 31408 7806 19985 19996 36069 36069 -0.02256255412999053 PQDETKFRW 9 Unmodified _PQDETKFRW_ 0 0 0 ENST00000457361.5_1_2:213869570-213869690:-|nuORF ENST00000457361.5_1_2:213869570-213869690:-|nuORF ENST00000457361.5_1_2:213869570-213869690:-|nuORF MSMS UPN46_class_I_Rep_3 1 603.7974853515625 2 603.798737 1205.58292 NaN NaN NaN NaN NaN NaN NaN 18.991 1 18.991 18.491 19.491 0 0 0 0 0.39598 1 1743 1743 1.6526 0 1 31409 6835 19986 19997 36070 36070 -0.011646576421071586 PQELATRAR 9 Unmodified _PQELATRAR_ 0 0 0 HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|28|3|sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|28|3|sense HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|28|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 521.2949829101562 2 521.293622 1040.57269 0.41514 0.00021641 1.4164 0.00073838 1.8316 0.00095479 521.2944515296113 107.83 0.11596 111.5 111.48 111.59 3.6724 8 6 2 0 0 0 0.41259 1 26454 26454 7.2892 0.56607 1 1419600 31410 8157 19987 19998 36071 36071 0.054027794233206805 PQFVSVLSATT 11 Unmodified _PQFVSVLSATT_ 0 0 0 REV__Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|150|3|anti-sense REV__Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|150|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 575.3123168945312 2 575.311146 1148.60774 0.44564 0.00025638 1.1658 0.00067069 1.6114 0.00092707 575.3116773787499 50.341 0.5899 54.036 53.679 54.269 3.6946 57 39 2 0 0 0 0.65821 1 10286 10286 2.4985 0.19575 1 229660 + 31411 32774 19988 19999 36072 36072 0.039379774406370416 PQGPLGTSF 9 Unmodified _PQGPLGTSF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS UPN46_class_I_Rep_3 1 452.232177734375 2 452.232168 902.449782 0.11733 5.3062E-05 0.058983 2.6674E-05 0.17632 7.9736E-05 452.2321441335693 61.262 0.58173 61.262 60.959 61.541 0 104 66 2 0 0 0 0.0054033 1 13586 13586 78.728 11.384 1 300390 31412 5798 19989 20000 36073 36073 -0.005344770279521072 PQIIIYYKG 9 Unmodified _PQIIIYYKG_ 0 0 0 L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|23|1|sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|23|1|sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 547.815673828125 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 118.19 1 121.81 121.31 122.31 3.6215 0 0 0 0.4007 1 28820 28820 0.52476 0 1 31413 11607 19990 20001 36074 36074 0.07411790516789551 PQIIQLLIG 9 Unmodified _PQIIQLLIG_ 0 0 0 L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|25|1|anti-sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|25|1|anti-sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 497.8194580078125 2 497.81841 993.622267 NaN NaN NaN NaN NaN NaN NaN 86.532 1 86.532 86.032 87.032 0 0 0 0 0.40038 1 20687 20687 0.6015 0 1 31414 12257 19991 20002 36075 36075 0.12520094379442526 PQIKKQRHKKR 11 Unmodified _PQIKKQRHKKR_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|15|1|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|15|1|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 483.6454162597656 3 482.975788 1445.90553 0.11343 5.4784E-05 -0.075422 -3.6427E-05 0.038008 1.8357E-05 483.3088914321587 50.714 1.0177 54.335 53.971 54.989 3.621 148 67 4 0 0 0 0.68132 1 10391 10391 0.40827 0.26837 1 278440 31415 12447 19992 20003 36076 36076 0.20041698547538545 PQIMILLM 8 Unmodified _PQIMILLM_ 0 0 0 Tigger1_dup2822|chr3:185641985-185642754:+|3.322099066832819|0.3779386991640286|3.14|148.0|1|1|sense Tigger1_dup2822|chr3:185641985-185642754:+|3.322099066832819|0.3779386991640286|3.14|148.0|1|1|sense Tigger1_dup2822|chr3:185641985-185642754:+|3.322099066832819|0.3779386991640286|3.14|148.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.7771911621094 2 479.776842 957.539131 0.021028 1.0089E-05 0.56843 0.00027272 0.58945 0.00028281 479.77703340177266 46.926 0.66231 50.278 50.023 50.685 3.3515 62 47 2 0 0 0 0.82752 1 10122 10122 0.79363 0.10326 1 146900 31416 33064 19993 20004 36077 36077 0.05866318335563392 PQIMILLM 8 Unmodified _PQIMILLM_ 0 0 0 Tigger1_dup2822|chr3:185641985-185642754:+|3.322099066832819|0.3779386991640286|3.14|148.0|1|1|sense Tigger1_dup2822|chr3:185641985-185642754:+|3.322099066832819|0.3779386991640286|3.14|148.0|1|1|sense Tigger1_dup2822|chr3:185641985-185642754:+|3.322099066832819|0.3779386991640286|3.14|148.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 479.7776794433594 2 479.776842 957.539131 NaN NaN NaN NaN NaN NaN NaN 46.645 1 49.996 49.496 50.496 3.3515 0 0 0 0.40738 1 9942 9942 0.79363 0 1 31417 33064 19993 20004 36078 36078 0.05866318335563392 PQIPLQMHGL 10 Unmodified _PQIPLQMHGL_ 0 0 0 REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|43|1|anti-sense REV__L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 567.311279296875 2 567.310426 1132.6063 NaN NaN NaN NaN NaN NaN NaN 65.477 1 68.656 68.156 69.156 3.1795 0 0 0 0.53105 1 15728 15728 1.4819 0 1 + 31418 26277 19994 20005 36079 36079 0.04530064870868955 PQIPNQQIY 9 Unmodified _PQIPNQQIY_ 0 0 0 REV__L1MA7_dup6284|chr11:117992035-117993051:-|1.3339420807382287|0.4115463295904447|1.7|151.0|11|1|sense REV__L1MA7_dup6284|chr11:117992035-117993051:-|1.3339420807382287|0.4115463295904447|1.7|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 550.7493286132812 2 550.790381 1099.56621 NaN NaN NaN NaN NaN NaN NaN 52.38 1 55.939 55.439 56.439 3.5585 0 0 0 0.38299 1 11650 11650 4.756 0 1 + 31419 25515 19995 20006 36080 36080 0.020408414719668144 PQKGIKAIT 9 Unmodified _PQKGIKAIT_ 0 0 0 REV__L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|4|1|sense REV__L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 478.3020935058594 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 66.017 1 69.504 69.004 70.004 3.4866 0 0 0 0.39518 1 15050 15050 1.8442 0.36234 1 + 31420 25654 19996 20007 36081 36081 0.10710637202555517 PQKIKMLL 8 Unmodified _PQKIKMLL_ 0 0 0 nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3 nc|ENSG00000182670|P53804-3|TTC3 nc|ENSG00000182670|P53804-3|TTC3 MSMS UPN47_class_I_Rep_1 2 485.8115234375 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 67.623 1 70.984 70.484 71.484 3.3611 0 0 0 0.40604 1 16273 16273 2.5775 0 1 31421 4966 19997 20008 36082 36082 0.11849055852906076 PQKITLKIIIK 11 Unmodified _PQKITLKIIIK_ 0 0 0 REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|4|1|sense REV__Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 432.3006286621094 3 432.298874 1293.87479 NaN NaN NaN NaN NaN NaN NaN 108.36 1 111.9 111.4 112.4 3.5382 0 0 0 0.38417 1 26519 26519 0.08335 0.010087 1 + 31422 32764 19998 20009 36083 36083 0.23961107389982317 PQKKGYFL 8 Unmodified _PQKKGYFL_ 0 0 0 REV__nc|ENSG00000163156|Q9BWG6-2|SCNM1 REV__nc|ENSG00000163156|Q9BWG6-2|SCNM1 MSMS UPN47_class_I_Rep_2 3 490.75103759765625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 25.445 1 28.928 28.428 29.428 3.483 0 0 0 0.40738 1 3533 3533 0.79363 0 1 + 31423 19966 19999 20010 36084 36084 0.05850965656816243 PQKKKKRKV 9 Unmodified _PQKKKKRKV_ 0 0 0 Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense MSMS UPN46_class_I_Rep_3 1 570.8486328125 2 570.3904 1138.76625 NaN NaN NaN NaN NaN NaN NaN 54.158 1 54.158 53.658 54.658 0 0 0 0 0.4007 1 11706 11706 0.52476 0.52476 1 31424 441 20000 20011 36085 36085 0.2024136093020843 PQKKNWIL 8 Unmodified _PQKKNWIL_ 0 0 0 REV__L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|10|1|sense REV__L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|10|1|sense MSMS UPN48_class_I_Rep_3 7 513.806640625 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 112.49 1 116.16 115.66 116.66 3.6614 0 0 0 0.40625 1 26728 26728 2.3027 0.24298 1 + 31425 30560 20001 20012 36086 36086 0.09042343439477918 PQKKSITY 8 Unmodified _PQKKSITY_ 0 0 0 L1MB7_dup21201|chr19:15327569-15328003:+|2.024132851660461|0.0139627098605212|7.18|151.0|20|1|anti-sense L1MB7_dup21201|chr19:15327569-15328003:+|2.024132851660461|0.0139627098605212|7.18|151.0|20|1|anti-sense L1MB7_dup21201|chr19:15327569-15328003:+|2.024132851660461|0.0139627098605212|7.18|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.7769470214844 2 482.776742 963.538931 NaN NaN NaN NaN NaN NaN NaN 65.708 1 69.159 68.659 69.659 3.4516 0 0 0 0.40604 1 14968 14968 2.5775 0 1 31426 10791 20002 20013 36087 36087 0.05570357931549097 PQKMPIEK 8 Unmodified _PQKMPIEK_ 0 0 0 REV__LTR40a_dup1163|chr8:129932201-129932716:+|1.744330090952039|0.0065964489867506|8.05|151.0|28|2|anti-sense REV__LTR40a_dup1163|chr8:129932201-129932716:+|1.744330090952039|0.0065964489867506|8.05|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7566833496094 2 485.773145 969.531738 NaN NaN NaN NaN NaN NaN NaN 19.675 1 23.325 22.825 23.825 3.6497 0 0 0 0.40604 1 1546 1546 2.5775 0 1 + 31427 30915 20003 20014 36088 36088 0.045753020594929694 PQKNPTKRRK 10 Unmodified _PQKNPTKRRK_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|66|2|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|66|2|sense MSMS UPN48_class_I_Rep_1 5 626.8820190429688 2 626.88347 1251.75239 NaN NaN NaN NaN NaN NaN NaN 99.279 1 102.89 102.39 103.39 3.6065 0 0 0 0.53105 1 23968 23968 3.2813 1.2216 1 + 31428 24096 20004 20015 36089 36089 0.1365808343111894 PQKNPTKRRK 10 Unmodified _PQKNPTKRRK_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|66|2|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|66|2|sense MSMS UPN48_class_I_Rep_2 6 626.8814697265625 2 626.88347 1251.75239 NaN NaN NaN NaN NaN NaN NaN 99.063 1 102.83 102.33 103.33 3.7707 0 0 0 0.53105 1 23531 23531 3.2813 0.28607 1 + 31429 24096 20004 20015 36090 36090 0.1365808343111894 PQKNPTKRRK 10 Unmodified _PQKNPTKRRK_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|66|2|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|66|2|sense MSMS UPN48_class_I_Rep_3 7 626.881591796875 2 626.88347 1251.75239 NaN NaN NaN NaN NaN NaN NaN 98.991 1 102.87 102.37 103.37 3.8839 0 0 0 0.53105 1 23453 23453 3.2813 1.2216 1 + 31430 24096 20004 20015 36091 36091 0.1365808343111894 PQKPLRRA 8 Unmodified _PQKPLRRA_ 0 0 0 nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522 nc|ENSG00000162522|Q9P206|NHSL3 nc|ENSG00000162522|Q9P206|NHSL3 MULTI-MSMS UPN48_class_I_Rep_1 5 483.3042907714844 2 483.303793 964.593033 0.12742 6.1581E-05 0.084712 4.0942E-05 0.21213 0.00010252 483.3037114975652 107.79 0.35803 111.42 111.31 111.67 3.6313 85 31 5 0 0 0 0.82752 1 26050 26050 4.756 0 1 92029000 31431 3939 20005 20016 36092 36092 0.10931994873794793 PQKTRFHSFF 10 Unmodified _PQKTRFHSFF_ 0 0 0 L1MA4A_dup1392|chr4:6809564-6811383:+|1.2710716111629037|0.0386342943510138|5.04|151.0|64|1|anti-sense L1MA4A_dup1392|chr4:6809564-6811383:+|1.2710716111629037|0.0386342943510138|5.04|151.0|64|1|anti-sense L1MA4A_dup1392|chr4:6809564-6811383:+|1.2710716111629037|0.0386342943510138|5.04|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_1 5 647.837890625 2 647.838197 1293.66184 NaN NaN NaN NaN NaN NaN NaN 86.645 1 90.258 89.758 90.758 3.613 0 0 0 0.53105 1 20761 20761 3.2813 0 1 31432 9761 20006 20017 36093 36093 0.026756143828151835 PQKVLVWI 8 Unmodified _PQKVLVWI_ 0 0 0 Charlie15b_dup1582|chr15:72493216-72493718:+|1.381035508192367|0.015394658790379|6.49|150.0|37|2|anti-sense Charlie15b_dup1582|chr15:72493216-72493718:+|1.381035508192367|0.015394658790379|6.49|150.0|37|2|anti-sense Charlie15b_dup1582|chr15:72493216-72493718:+|1.381035508192367|0.015394658790379|6.49|150.0|37|2|anti-sense MSMS UPN47_class_I_Rep_1 2 491.8067321777344 2 491.807845 981.601138 NaN NaN NaN NaN NaN NaN NaN 30.456 1 34.2 33.7 34.7 3.7449 0 0 0 0.40604 1 4983 4983 2.5775 0.51773 1 31433 449 20007 20018 36094 36094 0.10960129070554103 PQKWIKHV 8 Unmodified _PQKWIKHV_ 0 0 0 REV__L1MA2_dup5171|chr10:26453776-26454158:+|1.94156743238626|0.0083396233498255|7.86|151.0|5|2|sense REV__L1MA2_dup5171|chr10:26453776-26454158:+|1.94156743238626|0.0083396233498255|7.86|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 518.3088989257812 2 518.308544 1034.60253 0.39988 0.00020726 0.29815 0.00015453 0.69803 0.0003618 518.3084206537294 109.04 1.4209 112.65 112.55 113.97 3.6046 350 177 3 0 0 0 0.82752 1 26932 26932 2.3027 0.4585 1 21685000 + 31434 24882 20008 20019 36095 36095 0.08661763159329894 PQLHTANK 8 Unmodified _PQLHTANK_ 0 0 0 REV__L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|115|2|sense REV__L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|115|2|sense MSMS UPN47_class_I_Rep_3 4 454.7510070800781 2 454.751059 907.487565 NaN NaN NaN NaN NaN NaN NaN 46.271 1 49.514 49.014 50.014 3.2439 0 0 0 0.40501 1 9884 9884 3.9444 0 1 + 31435 30124 20009 20020 36096 36096 0.030120339575091748 PQLILNASSDS 11 Unmodified _PQLILNASSDS_ 0 0 0 REV__TFIP11|p.K589N|1|0.49|ENSG00000100109|chr22:26496155-26496155|C/G|missense_variant REV__TFIP11|p.K589N|1|0.49|ENSG00000100109|chr22:26496155-26496155|C/G|missense_variant MSMS UPN46_class_I_Rep_3 1 572.79736328125 2 572.79586 1143.57717 NaN NaN NaN NaN NaN NaN NaN 100.94 1 100.94 100.44 101.44 0 0 0 0 0.38417 1 24620 24620 2.9952 0.93549 1 + 31436 32197 20010 20021 36097 36097 0.011121990555693628 PQLLRSRDPP 10 Unmodified _PQLLRSRDPP_ 0 0 0 AluJr_dup70832|chr17:16050852-16051132:-|1.1893923728231772|0.1405267306424018|3.08|151.0|12|1|anti-sense AluJr_dup70832|chr17:16050852-16051132:-|1.1893923728231772|0.1405267306424018|3.08|151.0|12|1|anti-sense AluJr_dup70832|chr17:16050852-16051132:-|1.1893923728231772|0.1405267306424018|3.08|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 589.8343505859375 2 589.835654 1177.65676 NaN NaN NaN NaN NaN NaN NaN 39.634 1 43.3 42.8 43.8 3.6668 0 0 0 0.53105 1 7772 7772 1.4819 0.15237 1 31437 175 20011 20022 36098 36098 0.0750331052022375 PQLQVVRL 8 Unmodified _PQLQVVRL_ 0 0 0 REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.7997741699219 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 116.54 1 116.54 116.04 117.04 0 0 0 0 0.40746 1 28852 28852 0.69038 0 1 + 31438 19333 20012 20023 36099 36099 0.10882056922412175 PQLQVVRL 8 Unmodified _PQLQVVRL_ 0 0 0 REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF REV__ENST00000558383.1_1_15:45393877-45400429:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.8001708984375 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 117.75 1 117.75 117.25 118.25 0 0 0 0 0.40746 1 29200 29200 0.69038 0 1 + 31439 19333 20012 20023 36100 36100 0.10882056922412175 PQLRLRQC 8 Unmodified _PQLRLRQC_ 0 0 0 REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|249|3|anti-sense REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|249|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.2867431640625 2 507.287285 1012.56002 0.35113 0.00017812 -1.5199 -0.00077103 -1.1688 -0.00059291 507.2862843527115 108.79 0.48016 112.33 112.16 112.64 3.5333 72 53 2 0 0 0 0.82752 1 26404 26404 5.2307 0.47466 1 8485900 + 31440 29044 20013 20024 36101 36101 0.05424044759422486 PQLSLLAKFR 10 Unmodified _PQLSLLAKFR_ 0 0 0 ENSG00000120693|ENST00000379826|SMAD9;nc|ENSG00000120693|O15198-2|SMAD9 ENSG00000120693|ENST00000379826|SMAD9 ENSG00000120693|ENST00000379826|SMAD9 MULTI-SECPEP UPN48_class_I_Rep_1 5 586.392578125 2 586.861141 1171.70773 0.40779 0.00023932 -3.1395 -0.0018425 -2.7317 -0.0016031 586.8602091924841 108.07 0.13026 111.7 111.61 111.74 3.6313 16 12 2 0 0 0 0.84575 1 26095 26095 8.1555 0.8663 1 810420 31441 2335 20014 20025 36102 36102 0.1287425956509196 PQLSLLAKFR 10 Unmodified _PQLSLLAKFR_ 0 0 0 ENSG00000120693|ENST00000379826|SMAD9;nc|ENSG00000120693|O15198-2|SMAD9 ENSG00000120693|ENST00000379826|SMAD9 ENSG00000120693|ENST00000379826|SMAD9 MULTI-MATCH UPN48_class_I_Rep_2 6 2 586.861141 1171.70773 0.48177 0.00028273 -3.1895 -0.0018718 -2.7078 -0.0015891 586.8606622550273 108.01 0.056274 111.69 111.65 111.7 3.6746 -0.0058959 -4.6161E-05 NaN 8.1555 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 351870 31442 2335 20014 20025 0.1287425956509196 PQLSPFISFT 10 Unmodified _PQLSPFISFT_ 0 0 0 REV__L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|71|2|anti-sense REV__L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.8013305664062 2 568.802957 1135.59136 0.4787 0.00027229 -0.22816 -0.00012978 0.25054 0.00014251 568.8028674583929 72.315 0.60074 75.879 75.597 76.198 3.5645 84 57 2 0 0 0 0.54822 1 16953 16953 5.7319 0 1 210930 + 31443 24820 20015 20026 36103 36103 0.0289889627449611 PQLVLTRD 8 Unmodified _PQLVLTRD_ 0 0 0 REV__AluSq2_dup57446|chr20:1477687-1477973:-|1.0100127940684485|0.0981097921284273|3.36|144.0|3|1|sense REV__AluSq2_dup57446|chr20:1477687-1477973:-|1.0100127940684485|0.0981097921284273|3.36|144.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 471.2738952636719 2 471.274367 940.53418 NaN NaN NaN NaN NaN NaN NaN 75.436 1 78.936 78.436 79.436 3.4996 0 0 0 0.40738 1 17870 17870 0.79363 0 1 + 31444 17124 20016 20027 36104 36104 0.06153473788788233 PQLVYSTY 8 Unmodified _PQLVYSTY_ 0 0 0 REV__L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|27|3|sense REV__L1M4_dup7799|chr7:67246911-67247818:+|1.204533822288027|0.0629298212127102|4.26|151.0|27|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 485.81195068359375 2 485.74765 969.480748 0.1069 5.1925E-05 -0.24365 -0.00011835 -0.13675 -6.6428E-05 485.74757860168353 65.904 0.28398 69.262 69.081 69.365 3.3576 23 18 2 0 0 0 0.72333 1 15720 15720 5.2307 0 1 37482 + 31445 24448 20017 20028 36105 36105 -0.005213237137240867 PQLWKWKRK 9 Unmodified _PQLWKWKRK_ 0 0 0 L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|72|3|sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|72|3|sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|72|3|sense MSMS UPN47_class_I_Rep_3 4 635.3848266601562 2 635.382574 1268.7506 NaN NaN NaN NaN NaN NaN NaN 86.789 1 90.169 89.669 90.669 3.3801 0 0 0 0.4007 1 21752 21752 0.52476 0.12405 1 31446 15037 20018 20029 36106 36106 0.12697074413131304 PQLYVFGRKM 10 Unmodified _PQLYVFGRKM_ 0 0 0 REV__ENSG00000104213|ENST00000251630|PDGFRL REV__ENSG00000104213|ENST00000251630|PDGFRL MSMS UPN48_class_I_Rep_1 5 619.8394165039062 2 619.839351 1237.66415 NaN NaN NaN NaN NaN NaN NaN 100.22 1 103.83 103.33 104.33 3.6084 0 0 0 0.53105 1 24206 24206 1.4819 0 1 + 31447 18251 20019 20030 36107 36107 0.05482326796277448 PQNARVVRL 9 Unmodified _PQNARVVRL_ 0 0 0 MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|15|2|sense MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|15|2|sense MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 526.8212890625 2 526.819807 1051.62506 NaN NaN NaN NaN NaN NaN NaN 34.83 1 34.83 34.33 35.33 0 0 0 0 0.4007 1 6267 6267 0.52476 0.52476 1 31448 15988 20020 20031 36108 36108 0.10131362556944623 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS UPN48_class_I_Rep_1 5 530.2791137695312 2 530.279118 1058.54368 0.32849 0.00017419 0.081618 4.328E-05 0.41011 0.00021747 530.2790603421452 87.432 0.9345 91.051 90.664 91.598 3.6187 274 105 3 0 0 0 0.025281 6 20962 20866;20903;20932;20962;20994;21026 60.074 29.849 1 1123000 31449 5827 20021 20032 36109;36110;36111;36112;36113;36114 36112 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS UPN48_class_I_Rep_2 6 530.2791748046875 2 530.279118 1058.54368 0.42073 0.0002231 0.10302 5.463E-05 0.52375 0.00027773 530.279041516325 87.198 0.38376 90.915 90.706 91.089 3.7171 89 50 3 0 0 0 0.074399 3 20752 20721;20752;20784 39.95 16.801 1 461380 31450 5827 20021 20032 36115;36116;36117 36116 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS UPN48_class_I_Rep_2 6 530.2794189453125 2 530.279118 1058.54368 0.42049 0.00022298 -0.10676 -5.6615E-05 0.31373 0.00016636 530.2789580929071 87.429 0.24809 91.157 91.011 91.259 3.7279 57 29 3 0 0 0 0.32682 1 20814 20814 12.241 0.60036 1 224690 31451 5827 20021 20032 36118 36118 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS UPN48_class_I_Rep_2 6 530.279052734375 2 530.279118 1058.54368 0.41998 0.00022271 -0.10415 -5.523E-05 0.31583 0.00016748 530.2789934011008 87.602 0.16251 91.33 91.25 91.413 3.7279 27 18 2 0 0 0 0.24936 1 20847 20847 17.113 17.113 1 189060 31452 5827 20021 20032 36119 36119 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS UPN48_class_I_Rep_3 7 530.2792358398438 2 530.279118 1058.54368 0.51359 0.00027234 -0.096802 -5.1332E-05 0.41679 0.00022101 530.2789574256789 87.262 0.41426 91.052 90.725 91.139 3.7905 140 54 3 0 0 0 0.025281 2 20692 20663;20692 60.074 29.849 1 871540 31453 5827 20021 20032 36120;36121 36121 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS UPN48_class_I_Rep_3 7 530.2791748046875 2 530.279118 1058.54368 0.51346 0.00027228 -0.12046 -6.3876E-05 0.393 0.0002084 530.2789727838634 87.415 0.26457 91.205 91.128 91.393 3.7905 60 31 3 0 0 0 0.19147 2 20724 20724;20758 21.537 21.537 1 675850 31454 5827 20021 20032 36122;36123 36122 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MATCH UPN48_class_I_Rep_3 7 2 530.279118 1058.54368 0.51236 0.00027169 0.34926 0.00018521 0.86162 0.0004569 530.7806269695417 87.739 0.039879 91.549 91.53 91.57 3.8104 0.19605 0.0004693 NaN 12.241 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 81340 31455 5827 20021 20032 0.016752420743159746 PQPGPTPRPRA 11 Unmodified _PQPGPTPRPRA_ 0 0 0 ENST00000500914.6_1_4:174090049-174090625:-|nuORF ENST00000500914.6_1_4:174090049-174090625:-|nuORF ENST00000500914.6_1_4:174090049-174090625:-|nuORF MSMS UPN47_class_I_Rep_2 3 587.3271484375 2 587.327996 1172.64144 NaN NaN NaN NaN NaN NaN NaN 64.015 1 67.271 66.771 67.771 3.2556 0 0 0 0.38417 1 15222 15222 1.0715 0.38109 1 31456 7129 20022 20033 36124 36124 0.06202443723032047 PQPLCYFY 8 Unmodified _PQPLCYFY_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|79|1|anti-sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|79|1|anti-sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|79|1|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7386474609375 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 38.4 1 41.905 41.405 42.405 3.5052 0 0 0 0.40738 1 6648 6648 0.79363 0 1 31457 12450 20023 20034 36125 36125 -0.05056362240202361 PQPLLIVQG 9 Unmodified _PQPLLIVQG_ 0 0 0 REV__AluSc_dup1814|chr1:155448943-155449233:-|1.0969861595837391|0.0172561735764942|5.99|151.0|19|3|anti-sense REV__AluSc_dup1814|chr1:155448943-155449233:-|1.0969861595837391|0.0172561735764942|5.99|151.0|19|3|anti-sense MSMS UPN46_class_I_Rep_3 1 482.795654296875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 21.543 1 21.543 21.043 22.043 0 0 0 0 0.39518 1 2424 2424 1.8442 0 1 + 31458 17077 20024 20035 36126 36126 0.09207234828284072 PQPLVRLPWL 10 Unmodified _PQPLVRLPWL_ 0 0 0 REV__ENST00000367833.6_1_1:168148199-168148316:+|nuORF REV__ENST00000367833.6_1_1:168148199-168148316:+|nuORF MSMS UPN47_class_I_Rep_1 2 406.584228515625 3 406.916764 1217.72846 NaN NaN NaN NaN NaN NaN NaN 103.54 1 107.32 106.82 107.82 3.7788 0 0 0 0.53105 1 25455 25455 1.7423 0 1 + 31459 21934 20025 20036 36127 36127 0.1283084994474848 PQPPELLRL 9 Unmodified _PQPPELLRL_ 0 0 0 AluJr4_dup4716|chr3:195437055-195437341:-|1.3020021100207329|0.0189901493398625|6.1|151.0|23|3|anti-sense AluJr4_dup4716|chr3:195437055-195437341:-|1.3020021100207329|0.0189901493398625|6.1|151.0|23|3|anti-sense AluJr4_dup4716|chr3:195437055-195437341:-|1.3020021100207329|0.0189901493398625|6.1|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_2 3 531.8171997070312 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 91.806 1 95.271 94.771 95.771 3.4652 0 0 0 0.38916 1 22713 22713 3.2813 0.54611 1 31460 198 20026 20037 36128 36128 0.09498308748334239 PQPSRTMLMA 10 Unmodified _PQPSRTMLMA_ 0 0 0 REV__ENST00000371655.3_1_1:52442605-52442692:-|nuORF REV__ENST00000371655.3_1_1:52442605-52442692:-|nuORF MSMS UPN47_class_I_Rep_3 4 566.2844848632812 2 566.286094 1130.55763 NaN NaN NaN NaN NaN NaN NaN 29.487 1 32.81 32.31 33.31 3.3235 0 0 0 0.53105 1 4774 4774 1.6526 0 1 + 31461 21965 20027 20038 36129 36129 -0.0024217176053298317 PQQKARQQR 9 Unmodified _PQQKARQQR_ 0 0 0 REV__ENST00000375994.6_1_20:30408114-30409309:+|nuORF REV__ENST00000375994.6_1_20:30408114-30409309:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 570.3237915039062 2 570.323245 1138.63194 0.048538 2.7683E-05 -0.018647 -1.0635E-05 0.029892 1.7048E-05 570.3229670224432 12.952 0.22857 16.34 16.267 16.495 3.388 51 21 4 0 0 0 0.46434 1 190 190 4.3292 0 1 98543 + 31462 22015 20028 20039 36130 36130 0.06816675437494268 PQQQGKELKQI 11 Unmodified _PQQQGKELKQI_ 0 0 0 REV__ENSG00000204186|ENST00000374423|ZDBF2 REV__ENSG00000204186|ENST00000374423|ZDBF2 MSMS UPN48_class_I_Rep_3 7 648.8697509765625 2 648.867151 1295.71975 NaN NaN NaN NaN NaN NaN NaN 106.43 1 110.12 109.62 110.62 3.6899 0 0 0 0.38417 1 25100 25100 2.7352 1.0826 1 + 31463 21179 20029 20040 36131 36131 0.08371831517615647 PQQRKVLI 8 Unmodified _PQQRKVLI_ 0 0 0 HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|138|3|sense HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|138|3|sense HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|138|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.3138427734375 2 491.313826 980.613099 -0.31931 -0.00015688 0.33677 0.00016546 0.017461 8.5787E-06 491.3139001186543 23.784 1.0582 27.513 27.128 28.186 3.7298 180 88 3 0 0 0 0.82752 3 2982 2982;3016;3055 18.135 3.2967 1 331450 31464 8365 20030 20041 36132;36133;36134 36132 0.1220174581376341 PQQRKVLI 8 Unmodified _PQQRKVLI_ 0 0 0 HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|138|3|sense HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|138|3|sense HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|138|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.3136291503906 2 491.313826 980.613099 -0.10014 -4.9199E-05 0.03756 1.8454E-05 -0.062577 -3.0745E-05 491.31376583999923 24.107 1.0314 27.573 27.166 28.197 3.4655 201 89 3 0 0 0 0.82752 3 3154 3114;3154;3189 38.151 11.37 1 295740 31465 8365 20030 20041 36135;36136;36137 36136 0.1220174581376341 PQQRLNRRPR 10 Unmodified _PQQRLNRRPR_ 0 0 0 REV__nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5 REV__nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5 MSMS UPN48_class_I_Rep_2 6 440.9286804199219 3 440.928837 1319.76468 NaN NaN NaN NaN NaN NaN NaN 30.57 1 34.205 33.705 34.705 3.6351 0 0 0 0.53105 1 4491 4491 0.69767 0.19171 1 + 31466 32131 20031 20042 36138 36138 0.11759119894145442 PQRATSNVF 9 Unmodified _PQRATSNVF_ 0 0 0 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9 ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MULTI-SECPEP UPN46_class_I_Rep_3 1 510.2671203613281 2 510.267073 1018.51959 0.11649 5.9443E-05 0.063994 3.2654E-05 0.18049 9.2097E-05 510.2670251788063 32.647 0.79822 32.647 32.328 33.126 0 84 57 2 0 0 0 0.083569 1 5610 5610 26.268 8.1218 1 154480 31467 1580 20032 20043 36139 36139 0.011074016406723786 PQRELHYN 8 Unmodified _PQRELHYN_ 0 0 0 REV__L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|62|2|anti-sense REV__L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|62|2|anti-sense MSMS UPN47_class_I_Rep_1 2 528.7644653320312 2 528.764697 1055.51484 NaN NaN NaN NaN NaN NaN NaN 31.349 1 35.078 34.578 35.578 3.7293 0 0 0 0.40604 1 5248 5248 2.5775 0 1 + 31468 24344 20033 20044 36140 36140 -0.010694825021118959 PQRFLRGAL 9 Unmodified _PQRFLRGAL_ 0 0 0 nc|nan|Q9BVC5-2|C2orf49 nc|nan|Q9BVC5-2|C2orf49 nc|nan|Q9BVC5-2|C2orf49 MSMS UPN47_class_I_Rep_3 4 529.3036499023438 2 529.3169 1056.61925 NaN NaN NaN NaN NaN NaN NaN 58.105 1 61.273 60.773 61.773 3.1681 0 0 0 0.36505 1 13476 13476 7.2892 1.0834 1 31469 16869 20034 20045 36141 36141 0.09320264045254589 PQRIKGVPFV 10 Unmodified _PQRIKGVPFV_ 0 0 0 REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF REV__ENST00000372725.5_1_10:76585359-76602521:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 570.8483276367188 2 570.848033 1139.68151 0.09607 5.4841E-05 0.32338 0.0001846 0.41945 0.00023944 570.8480833009922 24.626 0.13369 24.626 24.568 24.702 0 14 13 2 0 0 0 0.56309 1 3266 3266 1.6526 0 1 42073 + 31470 21979 20035 20046 36142 36142 0.11725990393620123 PQRKVPEKPE 10 Unmodified _PQRKVPEKPE_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MSMS UPN47_class_I_Rep_1 2 604.345458984375 2 604.343312 1206.67207 NaN NaN NaN NaN NaN NaN NaN 70.866 1 74.237 73.737 74.737 3.3713 0 0 0 0.53105 1 17245 17245 2.7352 0.23671 1 31471 1150 20036 20047 36143 36143 0.07700177317428825 PQRKVPEKPE 10 Unmodified _PQRKVPEKPE_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MSMS UPN47_class_I_Rep_3 4 604.2454223632812 2 604.343312 1206.67207 NaN NaN NaN NaN NaN NaN NaN 71.224 1 74.442 73.942 74.942 3.2188 0 0 0 0.53105 1 17464 17464 1.3295 0.25807 1 31472 1150 20036 20047 36144 36144 0.07700177317428825 PQRLLAKR 8 Unmodified _PQRLLAKR_ 0 0 0 REV__ENST00000445563.2_1_1:28013637-28013913:-|nuORF REV__ENST00000445563.2_1_1:28013637-28013913:-|nuORF MSMS UPN48_class_I_Rep_1 5 491.3086853027344 2 491.319443 980.624333 NaN NaN NaN NaN NaN NaN NaN 109.17 1 112.8 112.3 113.3 3.6321 0 0 0 0.40625 1 26498 26498 2.3027 1.6124 1 + 31473 22356 20037 20048 36145 36145 0.133245679078982 PQRNNKRLN 9 Unmodified _PQRNNKRLN_ 0 0 0 REV__ENST00000561775.5_1_15:66795189-66797161:-|nuORF REV__ENST00000561775.5_1_15:66795189-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 570.3230590820312 2 570.323245 1138.63194 -0.44109 -0.00025157 0.2515 0.00014344 -0.18959 -0.00010813 570.3231667132713 12.98 0.19986 16.354 16.271 16.47 3.3734 49 22 3 0 0 0 0.46434 1 188 188 4.3292 0.38484 1 87730 + 31474 20525 20038 20049 36146 36146 0.06816675437517006 PQRNVESWL 9 Unmodified _PQRNVESWL_ 0 0 0 MLT1L_dup900|chr2:9516794-9517260:+|1.029941967628341|0.151845139294336|2.76|151.0|29|2|anti-sense MLT1L_dup900|chr2:9516794-9517260:+|1.029941967628341|0.151845139294336|2.76|151.0|29|2|anti-sense MLT1L_dup900|chr2:9516794-9517260:+|1.029941967628341|0.151845139294336|2.76|151.0|29|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 565.2699584960938 2 564.793455 1127.57236 -0.049728 -2.8086E-05 -0.24886 -0.00014056 -0.29859 -0.00016864 564.7937781711325 34.477 0.062656 38.163 38.118 38.181 3.6859 6 4 2 0 0 0 0.12477 1 6209 6209 0.40072 0 1 31830 31475 16490 20039 20050 36147 36147 0.013673597034767226 PQRTETLR 8 Unmodified _PQRTETLR_ 0 0 0 REV__nc|ENSG00000148290|Q15526-2|SURF1 REV__nc|ENSG00000148290|Q15526-2|SURF1 MSMS UPN48_class_I_Rep_1 5 500.7803649902344 2 500.780348 999.546142 NaN NaN NaN NaN NaN NaN NaN 29.535 1 33.085 32.585 33.585 3.5499 0 0 0 0.40501 1 4119 4119 3.9444 1.3669 1 + 31476 19582 20040 20051 36148 36148 0.04635090531996866 PQRVLPEYL 9 Unmodified _PQRVLPEYL_ 0 0 0 L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|190|1|anti-sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|190|1|anti-sense L1MA1_dup2332|chrX:63528545-63533057:+|1.0851440250480795|0.0317205182920883|5.1|151.0|190|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.2801513671875 2 557.816399 1113.61824 0.13534 7.5493E-05 0.19033 0.00010617 0.32567 0.00018166 557.8164233764148 45.818 1.0012 49.518 49.107 50.109 3.6999 130 60 3 0 0 0 0.48846 1 9552 9552 1.8442 0.19162 1 307560 31477 9281 20041 20052 36149 36149 0.06598004885699993 PQRWNLQRQ 9 Unmodified _PQRWNLQRQ_ 0 0 0 L1PA6_dup49|chr1:41552782-41555631:-|1.9740737274710305|0.2086153392182552|3.24|151.0|133|2|anti-sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|293|2|anti-sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|94|1|anti-sense;L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|230|1|anti-sense L1PA6_dup49|chr1:41552782-41555631:-|1.9740737274710305|0.2086153392182552|3.24|151.0|133|2|anti-sense L1PA6_dup49|chr1:41552782-41555631:-|1.9740737274710305|0.2086153392182552|3.24|151.0|133|2|anti-sense MSMS UPN48_class_I_Rep_1 5 613.333251953125 2 613.33107 1224.64759 NaN NaN NaN NaN NaN NaN NaN 45.393 1 48.909 48.409 49.409 3.5162 0 0 0 0.39518 1 8748 8748 1.8442 0.36234 1 31478 14391 20042 20053 36150 36150 0.04424961954532591 PQSNPLMCCSP 11 Unmodified _PQSNPLMCCSP_ 0 0 0 L1PB1_dup5171|chr6:88659095-88662158:+|1.1452601270383036|0.019765370694069|5.86|151.0|205|3|anti-sense L1PB1_dup5171|chr6:88659095-88662158:+|1.1452601270383036|0.019765370694069|5.86|151.0|205|3|anti-sense L1PB1_dup5171|chr6:88659095-88662158:+|1.1452601270383036|0.019765370694069|5.86|151.0|205|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 588.7459106445312 2 588.745944 1175.47734 0.4948 0.00029131 -0.055407 -3.2621E-05 0.4394 0.00025869 588.7458527911546 79.256 1.0205 82.611 82.255 83.275 3.3554 197 105 2 0 0 0 0.31686 1 19708 19708 24.991 3.2443 1 813230 31479 15138 20043 20054 36151 36151 -0.10338401145895659 PQSNYDYFF 9 Unmodified _PQSNYDYFF_ 0 0 0 HAL1_dup15628|chr11:64213901-64214168:-|1.069368657184393|0.0422573693884166|4.66|151.0|17|1|anti-sense HAL1_dup15628|chr11:64213901-64214168:-|1.069368657184393|0.0422573693884166|4.66|151.0|17|1|anti-sense HAL1_dup15628|chr11:64213901-64214168:-|1.069368657184393|0.0422573693884166|4.66|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_1 5 590.8143310546875 2 590.750921 1179.48729 NaN NaN NaN NaN NaN NaN NaN 112.26 1 115.89 115.39 116.39 3.6321 0 0 0 0.39428 1 27236 27236 2.0598 0 1 31480 7816 20044 20055 36152 36152 -0.09527430553021077 PQVSFCSWF 9 Unmodified _PQVSFCSWF_ 0 0 0 REV__HSMAR1_dup641|chr17:16076039-16077107:+|1.5756451908955538|0.1450127860332136|3.44|150.0|37|1|anti-sense REV__HSMAR1_dup641|chr17:16076039-16077107:+|1.5756451908955538|0.1450127860332136|3.44|150.0|37|1|anti-sense MSMS UPN47_class_I_Rep_3 4 550.7486572265625 2 550.747127 1099.4797 NaN NaN NaN NaN NaN NaN NaN 42.64 1 45.879 45.379 46.379 3.2394 0 0 0 0.39598 1 8769 8769 1.6526 0 1 + 31481 23959 20045 20056 36153 36153 -0.06605861354273657 PQWPNFLV 8 Unmodified _PQWPNFLV_ 0 0 0 REV__L1MD1_dup6575|chr21:45521264-45523061:+|2.6040447160431475|0.2094700257304265|3.64|151.0|85|2|anti-sense REV__L1MD1_dup6575|chr21:45521264-45523061:+|2.6040447160431475|0.2094700257304265|3.64|151.0|85|2|anti-sense MSMS UPN47_class_I_Rep_2 3 500.7188415527344 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 20.388 1 23.795 23.295 24.295 3.4074 0 0 0 0.40746 1 2105 2105 0.69038 0 1 + 31482 27379 20046 20057 36154 36154 0.018023926226987896 PQWYVATYS 9 Unmodified _PQWYVATYS_ 0 0 0 REV__L1MD3_dup935|chr3:53296670-53297281:-|1.570864784851442|0.0724421951793125|4.44|151.0|3|1|sense REV__L1MD3_dup935|chr3:53296670-53297281:-|1.570864784851442|0.0724421951793125|4.44|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 557.7626953125 2 557.763832 1113.51311 NaN NaN NaN NaN NaN NaN NaN 31.92 1 35.389 34.889 35.889 3.4691 0 0 0 0.38784 1 5465 5465 3.5965 0.31518 1 + 31483 27492 20047 20058 36155 36155 -0.03910536310718271 PQYKVISY 8 Unmodified _PQYKVISY_ 0 0 0 REV__ENSG00000011083|ENST00000230671|SLC6A7 REV__ENSG00000011083|ENST00000230671|SLC6A7 MSMS UPN46_class_I_Rep_3 1 499.271484375 2 499.271293 996.528032 NaN NaN NaN NaN NaN NaN NaN 50.315 1 50.315 49.815 50.815 0 0 0 0 0.39996 1 10628 10628 7.9102 0.62092 1 + 31484 17577 20048 20059 36156 36156 0.02962955557291025 PQYYKQQY 8 Unmodified _PQYYKQQY_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|36|3|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 559.2713623046875 2 559.269281 1116.52401 NaN NaN NaN NaN NaN NaN NaN 48.055 1 48.055 47.555 48.555 0 0 0 0 0.38221 1 9981 9981 14.582 2.9414 1 + 31485 31663 20049 20060 36157 36157 -0.029591339364287705 PQYYKQQY 8 Unmodified _PQYYKQQY_ 0 0 0 REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|36|3|sense REV__MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 559.2717895507812 2 559.269281 1116.52401 NaN NaN NaN NaN NaN NaN NaN 48.144 1 48.144 47.644 48.644 0 0 0 0 0.38221 1 10006 10006 14.582 2.9414 1 + 31486 31663 20049 20060 36158 36158 -0.029591339364287705 PRAAFYYY 8 Unmodified _PRAAFYYY_ 0 0 0 REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|77|2|anti-sense REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|77|2|anti-sense MSMS UPN47_class_I_Rep_2 3 525.7361450195312 2 525.75581 1049.49707 NaN NaN NaN NaN NaN NaN NaN 111.68 1 115.21 114.71 115.71 3.5226 0 0 0 0.40604 1 27191 27191 2.5775 1.2479 1 + 31487 28448 20050 20061 36159 36159 -0.025701977569724477 PRAFLPLM 8 Unmodified _PRAFLPLM_ 0 0 0 REV__ENSG00000117036|ENST00000368192|ETV3 REV__ENSG00000117036|ENST00000368192|ETV3 MSMS UPN46_class_I_Rep_3 1 472.771484375 2 472.772948 943.531344 NaN NaN NaN NaN NaN NaN NaN 110.49 1 110.49 109.99 110.99 0 0 0 0 0.40738 1 27211 27211 0.79363 0 1 + 31488 18621 20051 20062 36160 36160 0.05731927130307213 PRAGRAALQLK 11 Unmodified _PRAGRAALQLK_ 0 0 0 ENSG00000243509|ENST00000369996|TNFRSF6B ENSG00000243509|ENST00000369996|TNFRSF6B ENSG00000243509|ENST00000369996|TNFRSF6B MSMS UPN48_class_I_Rep_3 7 590.8672485351562 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 96.183 1 100.09 99.592 100.59 3.9084 0 0 0 0.38417 1 22792 22792 1.1933 0.66858 1 31489 5721 20052 20063 36161 36161 0.13735296028107769 PRAGRPHLK 9 Unmodified _PRAGRPHLK_ 0 0 0 REV__ENST00000269389.7_1_17:80285027-80291704:-|nuORF REV__ENST00000269389.7_1_17:80285027-80291704:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 516.3139038085938 2 516.314692 1030.61483 0.32393 0.00016725 -1.2532 -0.00064706 -0.92929 -0.00047981 516.3137046247003 94.969 0.061684 94.969 94.927 94.988 0 9 5 2 0 0 0 0.48846 1 23042 23042 1.8442 0.19162 1 83100 + 31490 21605 20053 20064 36162 36162 0.10074799622339015 PRAHLVLY 8 Unmodified _PRAHLVLY_ 0 0 0 L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|215|3|anti-sense;L1M1_dup283|chr1:107926375-107929137:+|2.0018239845247385|0.0123661827990278|7.34|151.0|168|3|anti-sense;L1MA3_dup1781|chr3:142076775-142079104:+|3.213623463206147|0.0200348855938817|7.33|151.0|103|2|anti-sense;L1M1_dup3845|chr7:17899107-17901898:-|1.261814895483778|0.1473715833895306|3.1|151.0|159|3|anti-sense;L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|141|2|anti-sense;L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|164|3|anti-sense;L1MA1_dup1236|chr5:43460381-43462827:+|1.7541986688915605|0.2092975406299803|3.07|151.0|159|3|anti-sense;L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|278|1|anti-sense;L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|199|1|anti-sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|215|3|anti-sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|215|3|anti-sense MSMS UPN46_class_I_Rep_3 1 484.7870178222656 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 39.034 1 39.034 38.534 39.534 0 0 0 0 0.40604 1 7476 7476 2.5775 1.0956 1 31491 8533 20054 20065 36163 36163 0.07525787750921609 PRCCNLRNCH 10 Unmodified _PRCCNLRNCH_ 0 0 0 Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|35|2|sense Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|35|2|sense Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 608.2679443359375 2 608.268244 1214.52193 0.35068 0.00021331 2.2683 0.0013797 2.619 0.001593 608.2674734071419 53.844 0.9383 57.372 56.99 57.929 3.5278 190 52 5 0 0 0 0.54466 1 12067 12067 6.2058 0.47393 1 486360 31492 33108 20055 20066 36164 36164 -0.07674532489181729 PRCCNLRNCH 10 Unmodified _PRCCNLRNCH_ 0 0 0 Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|35|2|sense Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|35|2|sense Tigger1_dup4939|chr6:70549468-70551328:-|2.074136091651836|0.4746105163888603|2.13|151.0|35|2|sense MSMS UPN47_class_I_Rep_2 3 608.2672119140625 2 608.268244 1214.52193 NaN NaN NaN NaN NaN NaN NaN 54.379 1 57.697 57.197 58.197 3.3187 0 0 0 0.53105 1 12289 12289 6.2058 1.8765 1 31493 33108 20055 20066 36165 36165 -0.07674532489181729 PRCIALFR 8 Unmodified _PRCIALFR_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MSMS UPN46_class_I_Rep_3 1 488.2897644042969 2 488.281472 974.548391 NaN NaN NaN NaN NaN NaN NaN 29.788 1 29.788 29.288 30.288 0 0 0 0 0.40625 1 4765 4765 2.3027 0 1 + 31494 20694 20056 20067 36166 36166 0.060098477361066216 PRCLRTQF 8 Unmodified _PRCLRTQF_ 0 0 0 LTR37A_dup1963|chr22:17756183-17756322:-|1.1919897658007743|0.0203426099850567|5.87|151.0|3|2|sense LTR37A_dup1963|chr22:17756183-17756322:-|1.1919897658007743|0.0203426099850567|5.87|151.0|3|2|sense LTR37A_dup1963|chr22:17756183-17756322:-|1.1919897658007743|0.0203426099850567|5.87|151.0|3|2|sense MSMS UPN46_class_I_Rep_3 1 510.7612609863281 2 510.774011 1019.53347 NaN NaN NaN NaN NaN NaN NaN 57.232 1 57.232 56.732 57.732 0 0 0 0 0.38547 1 12528 12528 13.508 0 1 31495 15628 20057 20068 36167 36167 0.024483558681026807 PRCPWGLTW 9 Unmodified _PRCPWGLTW_ 0 0 0 REV__ENST00000568395.1_1_16:2721378-2721618:-|nuORF REV__ENST00000568395.1_1_16:2721378-2721618:-|nuORF MSMS UPN47_class_I_Rep_3 4 558.27685546875 2 558.276386 1114.53822 NaN NaN NaN NaN NaN NaN NaN 26.342 1 29.69 29.19 30.19 3.3478 0 0 0 0.4007 1 3838 3838 0.52476 0 1 + 31496 23076 20058 20069 36168 36168 -0.014467599891304417 PRCQLCVF 8 Unmodified _PRCQLCVF_ 0 0 0 nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 nc|ENSG00000111271|Q6JQN1-3|ACAD10 MULTI-SECPEP UPN47_class_I_Rep_1 2 482.7585144042969 2 483.238415 964.462278 -0.29042 -0.00014034 -1.3274 -0.00064143 -1.6178 -0.00078177 483.23755894655346 36.45 0.089344 40.119 40.065 40.154 3.6692 8 5 2 0 0 0 0.72333 1 6811 6811 0.79363 0 1 29273 31497 1966 20059 20070 36169 36169 -0.02137480160922678 PRDLWKFALK 10 Unmodified _PRDLWKFALK_ 0 0 0 MSTA-int_dup1399|chr8:59078679-59079975:+|1.5692578174571907|0.0121562538595069|7.01|151.0|21|2|sense MSTA-int_dup1399|chr8:59078679-59079975:+|1.5692578174571907|0.0121562538595069|7.01|151.0|21|2|sense MSTA-int_dup1399|chr8:59078679-59079975:+|1.5692578174571907|0.0121562538595069|7.01|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 637.3726806640625 2 637.374415 1272.73428 NaN NaN NaN NaN NaN NaN NaN 102.27 1 105.88 105.38 106.38 3.6164 0 0 0 0.53105 1 24667 24667 1.1933 0.12188 1 31498 16543 20060 20071 36170 36170 0.10881948456426471 PRDRFKMT 8 Unmodified _PRDRFKMT_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 REV__nc|ENSG00000165288|Q6RI45-2|BRWD3 MSMS UPN48_class_I_Rep_3 7 525.780029296875 2 525.779293 1049.54403 NaN NaN NaN NaN NaN NaN NaN 113.16 1 116.82 116.32 117.32 3.6568 0 0 0 0.40625 1 26901 26901 2.3027 0.65011 1 + 31499 20114 20061 20072 36171 36171 0.02124338522526159 PRFLPHPK 8 Unmodified _PRFLPHPK_ 0 0 0 HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|50|3|sense HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|50|3|sense HERVIP10B3-int_dup160|chr14:92622868-92625542:-|2.0247863470756395|0.0652778251840825|4.96|151.0|50|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2956848144531 2 496.295436 990.57632 0.12362 6.1354E-05 0.23111 0.0001147 0.35474 0.00017606 496.29551315471826 33.502 0.12956 33.502 33.445 33.574 0 13 10 3 0 0 0 0.82752 1 5864 5864 2.3027 0 1 156770 31500 8184 20062 20073 36172 36172 0.0806549398784 PRFLPPTGLLG 11 Unmodified _PRFLPPTGLLG_ 0 0 0 REV__ENST00000389915.3_1_2:131840226-131851016:-|nuORF REV__ENST00000389915.3_1_2:131840226-131851016:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 584.3475952148438 2 584.347866 1166.68118 0.1464 8.5549E-05 0.121 7.0706E-05 0.2674 0.00015626 584.3479261348751 24.666 0.13369 24.666 24.568 24.702 0 23 13 2 0 0 0 0.67113 1 3260 3260 1.3295 0 1 49606 + 31501 22080 20063 20074 36173 36173 0.10450570673742732 PRFRLPAAARG 11 Unmodified _PRFRLPAAARG_ 0 0 0 ENST00000255465.6_1_13:37006808-37007186:+|nuORF ENST00000255465.6_1_13:37006808-37007186:+|nuORF ENST00000255465.6_1_13:37006808-37007186:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.8624267578125 2 606.359631 1210.70471 0.38021 0.00023054 2.2378 0.0013569 2.618 0.0015874 606.3607478999442 31.596 0.10587 31.596 31.526 31.632 0 11 6 2 0 0 0 0.67264 1 5297 5297 1.1933 0.23107 1 571990 31502 5924 20064 20075 36174 36174 0.10778429230913389 PRFRLPAAARG 11 Unmodified _PRFRLPAAARG_ 0 0 0 ENST00000255465.6_1_13:37006808-37007186:+|nuORF ENST00000255465.6_1_13:37006808-37007186:+|nuORF ENST00000255465.6_1_13:37006808-37007186:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3612670898438 2 606.359631 1210.70471 0.50067 0.00030359 2.5401 0.0015402 3.0408 0.0018438 606.3610363513752 37.024 0.035831 37.024 37.001 37.037 0 6 2 3 0 0 0 0.67264 1 6921 6921 1.1933 0.23107 1 236900 31503 5924 20064 20075 36175 36175 0.10778429230913389 PRFRPRYRRP 10 Unmodified _PRFRPRYRRP_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 MSMS UPN46_class_I_Rep_3 1 467.60845947265625 3 467.609328 1399.80615 NaN NaN NaN NaN NaN NaN NaN 78.341 1 78.341 77.841 78.841 0 0 0 0 0.53105 1 18344 18344 0.15932 0 1 31504 712 20065 20076 36176 36176 0.12224300653474529 PRFSVKLHL 9 Unmodified _PRFSVKLHL_ 0 0 0 REV__L1MA2_dup6802|chr16:72454002-72456205:-|1.3737781769536197|0.0125777713952283|6.77|151.0|14|1|sense REV__L1MA2_dup6802|chr16:72454002-72456205:-|1.3737781769536197|0.0125777713952283|6.77|151.0|14|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8349609375 2 548.834926 1095.6553 0.39588 0.00021727 0.73945 0.00040584 1.1353 0.00062311 549.3368883796286 108.9 0.93713 108.9 108.7 109.64 0 196 71 4 0 0 0 0.36392 1 26793 26793 10.074 0.6908 1 85366000 + 31505 24940 20066 20077 36177 36177 0.11129721222141598 PRFSVKLHL 9 Unmodified _PRFSVKLHL_ 0 0 0 REV__L1MA2_dup6802|chr16:72454002-72456205:-|1.3737781769536197|0.0125777713952283|6.77|151.0|14|1|sense REV__L1MA2_dup6802|chr16:72454002-72456205:-|1.3737781769536197|0.0125777713952283|6.77|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.8350219726562 2 548.834926 1095.6553 0.48912 0.00026845 0.38348 0.00021047 0.8726 0.00047891 548.8348846123579 109.25 0.84949 112.92 112.8 113.65 3.6715 264 112 3 0 0 0 0.36392 1 26016 26016 10.074 2.1638 1 4923100 + 31506 24940 20066 20077 36178 36178 0.11129721222141598 PRGELKRER 9 Unmodified _PRGELKRER_ 0 0 0 ENST00000489020.1_1_1:20810886-20811114:-|nuORF ENST00000489020.1_1_1:20810886-20811114:-|nuORF ENST00000489020.1_1_1:20810886-20811114:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 570.8341674804688 2 570.833446 1139.65234 0.048522 2.7698E-05 0.19835 0.00011323 0.24687 0.00014092 570.8336897687391 13.211 0.12106 16.599 16.525 16.646 3.388 20 11 2 0 0 0 0.47197 1 264 264 3.5965 0 1 41171 31507 7054 20067 20078 36179 36179 0.08809846097301488 PRGGGPSAEAK 11 Unmodified _PRGGGPSAEAK_ 0 0 0 REV__ENST00000401419.7_1_22:37425582-37425828:+|nuORF REV__ENST00000401419.7_1_22:37425582-37425828:+|nuORF MSMS UPN48_class_I_Rep_3 7 513.7711791992188 2 513.76998 1025.52541 NaN NaN NaN NaN NaN NaN NaN 24.391 1 28.16 27.66 28.66 3.769 0 0 0 0.38417 1 2815 2815 0.96228 0.16864 1 + 31508 22159 20068 20079 36180 36180 0.013665001523349929 PRGKKNKY 8 Unmodified _PRGKKNKY_ 0 0 0 REV__L1ME1_dup496|chr1:45600221-45601560:-|2.500623807576311|0.031496047755996|6.31|151.0|8|1|sense REV__L1ME1_dup496|chr1:45600221-45601560:-|2.500623807576311|0.031496047755996|6.31|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 495.7959899902344 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 112 1 115.63 115.13 116.13 3.6321 0 0 0 0.40746 1 27174 27174 0.69038 0 1 + 31509 27772 20069 20080 36181 36181 0.0818428863688041 PRHILVMW 8 Unmodified _PRHILVMW_ 0 0 0 HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|146|3|sense HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|146|3|sense HERV9NC-int_dup61|chr4:25239798-25245831:-|1.8351090486220731|0.1157090266359777|3.99|151.0|146|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 525.7442626953125 2 526.297122 1050.57969 -0.27788 -0.00014625 2.1195 0.0011155 1.8416 0.00096923 526.2986161453292 33.106 0.19318 36.561 36.486 36.679 3.4547 19 14 2 0 0 0 0.72333 1 5814 5814 0.79363 0 1 42407 31510 8105 20070 20081 36182 36182 0.056424207702093554 PRHLQPPK 8 Unmodified _PRHLQPPK_ 0 0 0 MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|1|1|sense MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|1|1|sense MER52A_dup84|chr1:246220241-246221940:+|1.2605312495911425|0.021374836711435|5.88|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.78973388671875 2 486.790518 971.566484 0.13883 6.7579E-05 -0.33162 -0.00016143 -0.1928 -9.3852E-05 486.79034258529623 34.874 0.45913 38.546 38.402 38.861 3.6721 88 51 2 0 0 0 0.82752 1 5618 5618 0.69038 0 1 136070 31511 16098 20071 20082 36183 36183 0.07956305982463618 PRHLSNVSST 10 Unmodified _PRHLSNVSST_ 0 0 0 nc|ENSG00000186868|P10636-3|MAPT;ENST00000576518.1_1_17:44055640-44101534:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT nc|ENSG00000186868|P10636-3|MAPT nc|ENSG00000186868|P10636-3|MAPT MSMS UPN47_class_I_Rep_3 4 549.3004150390625 2 549.288537 1096.56252 NaN NaN NaN NaN NaN NaN NaN 100.89 1 104.36 103.86 104.86 3.4671 0 0 0 0.53105 1 24901 24901 3.2813 1.2216 1 31512 5170 20072 20083 36184 36184 0.018101716980936544 PRHNLLQL 8 Unmodified _PRHNLLQL_ 0 0 0 REV__nc|ENSG00000241258|O75575-4|CRCP REV__nc|ENSG00000241258|O75575-4|CRCP MSMS UPN47_class_I_Rep_1 2 495.79559326171875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 61.034 1 64.416 63.916 64.916 3.3815 0 0 0 0.40625 1 14283 14283 2.3027 0 1 + 31513 21327 20073 20084 36185 36185 0.08184288636891779 PRHPGTSTVR 10 Unmodified _PRHPGTSTVR_ 0 0 0 REV__nc|ENSG00000143772|P27987-2|ITPKB REV__nc|ENSG00000143772|P27987-2|ITPKB MULTI-SECPEP UPN48_class_I_Rep_2 6 553.74609375 2 554.304521 1106.59449 0.51606 0.00028606 1.3207 0.00073207 1.8368 0.0010181 554.3057477699418 66.383 0.089851 69.87 69.836 69.925 3.4866 9 7 2 0 0 0 0.84575 1 15157 15157 0.35063 0 1 36968 + 31514 19462 20074 20085 36186 36186 0.04545584171910377 PRHRLRWKLW 10 Unmodified _PRHRLRWKLW_ 0 0 0 ENST00000478597.5_1_9:140007734-140009165:-|nuORF ENST00000478597.5_1_9:140007734-140009165:-|nuORF ENST00000478597.5_1_9:140007734-140009165:-|nuORF MSMS UPN47_class_I_Rep_1 2 483.2907409667969 3 483.289707 1446.84729 NaN NaN NaN NaN NaN NaN NaN 25.884 1 29.647 29.147 30.147 3.7624 0 0 0 0.53105 1 3621 3621 0.15932 0 1 31515 6984 20075 20086 36187 36187 0.14174061692961004 PRHRRLHR 8 Unmodified _PRHRRLHR_ 0 0 0 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 MSMS UPN47_class_I_Rep_2 3 564.3426513671875 2 564.342107 1126.66966 NaN NaN NaN NaN NaN NaN NaN 43.129 1 46.487 45.987 46.987 3.358 0 0 0 0.40746 1 8865 8865 0.69038 0 1 31516 3180 20076 20087 36188 36188 0.11139231213633138 PRHVDLLYQ 9 Unmodified _PRHVDLLYQ_ 0 0 0 REV__ENSG00000124302|ENST00000650847|CHST8 REV__ENSG00000124302|ENST00000650847|CHST8 MULTI-MSMS UPN48_class_I_Rep_3 7 571.3137817382812 2 570.811648 1139.60874 0.38127 0.00021763 0.17191 9.813E-05 0.55318 0.00031576 570.8116795596474 43.442 0.10845 47.08 47.015 47.123 3.6385 9 8 2 0 0 0 0.49026 1 8080 8080 1.6526 0 1 153370 + 31517 18804 20077 20088 36189 36189 0.0445223660017291 PRHVWQHK 8 Unmodified _PRHVWQHK_ 0 0 0 REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF MSMS UPN47_class_I_Rep_2 3 544.2982788085938 2 544.299042 1086.58353 NaN NaN NaN NaN NaN NaN NaN 30.069 1 33.551 33.051 34.051 3.4821 0 0 0 0.40746 1 4904 4904 0.69038 0 1 + 31518 20338 20078 20089 36190 36190 0.043702265882757274 PRIAKAIFKET 11 Unmodified _PRIAKAIFKET_ 0 0 0 L1MA2_dup6397|chr14:60882146-60884486:-|1.0613918632094734|0.0516729378425987|4.36|149.0|6|1|sense L1MA2_dup6397|chr14:60882146-60884486:-|1.0613918632094734|0.0516729378425987|4.36|149.0|6|1|sense L1MA2_dup6397|chr14:60882146-60884486:-|1.0613918632094734|0.0516729378425987|4.36|149.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 637.7897338867188 2 637.38498 1272.75541 NaN NaN NaN NaN NaN NaN NaN 89.741 1 93.57 93.07 94.07 3.8293 0 0 0 0.38417 1 21312 21312 1.1933 0 1 31519 9420 20079 20090 36191 36191 0.12993913765239995 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 437.2572326660156 3 437.256843 1308.7487 0.15217 6.6538E-05 1.1131 0.00048671 1.2653 0.00055325 437.25729690055306 92.062 0.4052 92.062 91.728 92.133 0 46 38 2 0 0 0 0.56444 1 22277 22277 0.69767 0.19171 1 203470 + 31520 23936 20080 20091 36192 36192 0.10667413657256475 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 437.256843 1308.7487 0.15217 6.6538E-05 1.1131 0.00048671 1.2653 0.00055325 437.25729690055306 92.062 0.4052 92.062 91.728 92.133 0 -0.078014 -0.00016164 NaN 0.69767 46 38 2 NaN NaN NaN NaN 0 NaN NaN 0 203470 + 31521 23936 20080 20091 0.10667413657256475 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 437.256843 1308.7487 0.11731 5.1293E-05 0.93732 0.00040985 1.0546 0.00046114 437.257170626804 88.453 0.12612 92.109 92.079 92.205 3.6563 -0.03066 -0.00039221 NaN 0.69767 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 52909 + 31522 23936 20080 20091 0.10667413657256475 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 437.256843 1308.7487 -0.33375 -0.00014594 1.781 0.00077876 1.4473 0.00063283 437.25772764318793 88.68 0.11685 92.073 92.004 92.121 3.3931 -0.066406 0.00071453 NaN 0.69767 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 55013 + 31523 23936 20080 20091 0.10667413657256475 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 437.256843 1308.7487 -0.037797 -1.6527E-05 1.4201 0.00062095 1.3823 0.00060442 437.2573137615837 88.482 0.12032 92.105 92.059 92.179 3.6229 -0.034267 0.00024108 NaN 0.69767 25 15 3 NaN NaN NaN NaN 0 NaN NaN 0 109680 + 31524 23936 20080 20091 0.10667413657256475 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 437.256843 1308.7487 0.10978 4.8002E-05 1.298 0.00056758 1.4078 0.00061558 437.25742654106733 88.533 0.13691 92.271 92.228 92.364 3.7379 0.13129 8.0973E-05 NaN 0.69767 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 89259 + 31525 23936 20080 20091 0.10667413657256475 PRIARQERRQ 10 Unmodified _PRIARQERRQ_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|50|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 437.256843 1308.7487 0.15785 6.9019E-05 1.0207 0.00044632 1.1786 0.00051534 437.25729539058943 88.407 0.099335 92.218 92.18 92.28 3.8104 0.078059 -0.0002828 NaN 0.69767 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 83060 + 31526 23936 20080 20091 0.10667413657256475 PRIASNAGSIA 11 Unmodified _PRIASNAGSIA_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN48_class_I_Rep_3 7 528.7929077148438 2 528.793455 1055.57236 0.37663 0.00019916 -0.57397 -0.00030351 -0.19734 -0.00010435 528.7931367806307 31.228 0.46862 34.929 34.664 35.132 3.7015 70 50 2 0 0 0 0.62748 1 4579 4579 4.5289 0.58447 1 81339 31527 2511 20081 20092 36193 36193 0.04679359703482078 PRIIKVILSKK 11 Unmodified _PRIIKVILSKK_ 0 0 0 L1MA3_dup8581|chr20:21368776-21370345:-|1.7869790138191366|0.0666653532195751|4.74|151.0|1|1|sense L1MA3_dup8581|chr20:21368776-21370345:-|1.7869790138191366|0.0666653532195751|4.74|151.0|1|1|sense L1MA3_dup8581|chr20:21368776-21370345:-|1.7869790138191366|0.0666653532195751|4.74|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 432.3011474609375 3 432.302619 1293.88603 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.41 110.91 111.91 3.5345 0 0 0 0.38417 1 26120 26120 0.40827 0 1 31528 9647 20082 20093 36194 36194 0.2508392948409437 PRKAARMPLLR 11 Unmodified _PRKAARMPLLR_ 0 0 0 REV__ENSG00000174282|ENST00000380599|ZBTB4 REV__ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS UPN48_class_I_Rep_1 5 436.93988037109375 3 436.939686 1307.79723 -0.047643 -2.0817E-05 0.21849 9.5468E-05 0.17085 7.4651E-05 436.93975156174486 45.654 0.94482 49.171 48.854 49.799 3.5162 122 65 2 0 0 0 0.65674 1 8832 8832 2.6312 0.88896 1 208360 + 31529 20515 20083 20094 36195 36195 0.15564190972781944 PRKAARMPLLR 11 Unmodified _PRKAARMPLLR_ 0 0 0 REV__ENSG00000174282|ENST00000380599|ZBTB4 REV__ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS UPN48_class_I_Rep_3 7 436.94012451171875 3 436.939686 1307.79723 0.061296 2.6783E-05 0.20945 9.1518E-05 0.27075 0.0001183 436.93970691248904 45.674 1.6943 49.311 48.799 50.494 3.6369 194 115 3 0 0 0 0.65674 1 8793 8793 2.6312 2.6312 1 279400 + 31530 20515 20083 20094 36196 36196 0.15564190972781944 PRKELQFC 8 Unmodified _PRKELQFC_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 MSMS UPN46_class_I_Rep_3 1 510.7684020996094 2 510.768394 1019.52224 NaN NaN NaN NaN NaN NaN NaN 116.61 1 116.61 116.11 117.11 0 0 0 0 0.40604 1 28873 28873 2.5775 0 1 + 31531 32110 20084 20095 36197 36197 0.013255337739678907 PRKGQRTALPA 11 Unmodified _PRKGQRTALPA_ 0 0 0 REV__ENSG00000125965|ENST00000374369|GDF5 REV__ENSG00000125965|ENST00000374369|GDF5 MULTI-MSMS UPN46_class_I_Rep_3 1 597.8563232421875 2 597.856921 1193.69929 0.57596 0.00034434 -1.1499 -0.00068746 -0.57392 -0.00034312 597.8560679685173 89.679 0.2317 89.679 89.583 89.815 0 48 20 3 0 0 0 0.67113 1 21611 21611 1.3295 0 1 640970 + 31532 18849 20085 20096 36198 36198 0.11018705648439209 PRKGQRTALPA 11 Unmodified _PRKGQRTALPA_ 0 0 0 REV__ENSG00000125965|ENST00000374369|GDF5 REV__ENSG00000125965|ENST00000374369|GDF5 MULTI-MSMS UPN47_class_I_Rep_3 4 597.8558349609375 2 597.856921 1193.69929 0.48828 0.00029192 -0.50848 -0.000304 -0.020205 -1.2079E-05 598.3583623650973 85.688 1.3356 89.06 88.741 90.076 3.3716 281 165 2 0 0 0 0.67113 1 21600 21600 1.3295 0 1 409170 + 31533 18849 20085 20096 36199 36199 0.11018705648439209 PRKGQRTALPA 11 Unmodified _PRKGQRTALPA_ 0 0 0 REV__ENSG00000125965|ENST00000374369|GDF5 REV__ENSG00000125965|ENST00000374369|GDF5 MULTI-MSMS UPN48_class_I_Rep_1 5 597.854736328125 2 597.856921 1193.69929 0.43327 0.00025903 -0.8405 -0.0005025 -0.40723 -0.00024347 597.8560557878972 83.345 0.54756 86.932 86.464 87.012 3.5871 107 63 2 0 0 0 0.67264 1 19888 19888 1.1933 0 1 94377 + 31534 18849 20085 20096 36200 36200 0.11018705648439209 PRKGQRTALPA 11 Unmodified _PRKGQRTALPA_ 0 0 0 REV__ENSG00000125965|ENST00000374369|GDF5 REV__ENSG00000125965|ENST00000374369|GDF5 MULTI-MSMS UPN48_class_I_Rep_2 6 597.8558959960938 2 597.856921 1193.69929 0.48266 0.00028856 -0.63304 -0.00037847 -0.15038 -8.9904E-05 597.856207419792 83.386 0.26195 87.067 87.028 87.29 3.6814 49 30 2 0 0 0 0.67113 1 19852 19852 1.3295 0 1 112810 + 31535 18849 20085 20096 36201 36201 0.11018705648439209 PRKGRKHA 8 Unmodified _PRKGRKHA_ 0 0 0 REV__ENSG00000129317|ENST00000344862|PUS7L REV__ENSG00000129317|ENST00000344862|PUS7L MULTI-SECPEP UPN47_class_I_Rep_2 3 474.7904357910156 2 475.293759 948.572966 0.31097 0.0001478 -3.2538 -0.0015465 -2.9429 -0.0013987 475.29245283932147 110.95 0.060715 114.48 114.44 114.5 3.5271 5 4 2 0 0 0 0.72333 1 27004 27004 9.3474 0 1 397970 + 31536 18920 20086 20097 36202 36202 0.09662243933837544 PRKIRVILVR 10 Unmodified _PRKIRVILVR_ 0 0 0 MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 625.4325561523438 2 625.432599 1248.85064 0.59807 0.00037405 -0.84068 -0.00052579 -0.24261 -0.00015174 625.4320032129285 108.27 0.27596 111.95 111.88 112.15 3.6813 64 29 3 0 0 0 0.56333 1 25611 25611 1.4819 1.0236 1 5136700 31537 15922 20087 20098 36203 36203 0.23617311746966152 PRKIRVILVR 10 Unmodified _PRKIRVILVR_ 0 0 0 MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 625.432599 1248.85064 0.5551 0.00034718 -1.0112 -0.00063245 -0.45611 -0.00028527 625.4317991627308 108.2 0.14024 111.83 111.73 111.87 3.6355 -0.12287 -8.4852E-05 NaN 1.4819 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3633600 31538 15922 20087 20098 0.23617311746966152 PRKIRVILVR 10 Unmodified _PRKIRVILVR_ 0 0 0 MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MER34A_dup1234|chr14:89512211-89512769:-|2.0569080719339583|0.0083116605140633|7.95|150.0|32|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 625.432599 1248.85064 0.42743 0.00026733 -0.98805 -0.00061796 -0.56062 -0.00035063 625.4319259050395 108.42 0.15655 112.05 111.95 112.11 3.6313 0.10057 -5.5875E-05 NaN 1.4819 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1119700 31539 15922 20087 20098 0.23617311746966152 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN46_class_I_Rep_3 1 641.8597412109375 2 641.859326 1281.7041 0.75163 0.00048244 0.61516 0.00039485 1.3668 0.00087728 641.859656075837 107.33 0.14107 107.33 107.25 107.39 0 82 18 7 0 0 0 0.37961 1 26172 26172 10.8 3.6978 1 196660000 31540 1318 20088 20099 36204 36204 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN46_class_I_Rep_3 1 642.3628540039062 2 641.859326 1281.7041 0.75028 0.00048157 0.62094 0.00039856 1.3712 0.00088013 641.8592688849741 107.47 0.24403 107.47 107.38 107.62 0 93 34 3 0 0 0 0.52578 3 26195 26195;26228;26244 7.1017 0.89594 1 131630000 31541 1318 20088 20099 36205;36206;36207 36205 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN46_class_I_Rep_3 1 641.859130859375 2 641.859326 1281.7041 0.75009 0.00048145 -0.11882 -7.6268E-05 0.63126 0.00040518 642.3609646522939 110.22 0.22974 110.22 110.11 110.34 0 34 20 2 0 0 0 0.52578 2 27119 27119;27165 7.1017 0.89594 1 442270 31542 1318 20088 20099 36208;36209 36208 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN46_class_I_Rep_3 1 641.8590087890625 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 107.96 1 107.96 107.46 108.46 0 0 0 0 0.37931 1 26347 26347 7.1017 0.89594 1 31543 1318 20088 20099 36210 36210 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN46_class_I_Rep_3 1 641.859130859375 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 108.1 1 108.1 107.6 108.6 0 0 0 0 0.37931 1 26407 26407 7.1017 0.89594 1 31544 1318 20088 20099 36211 36211 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_1 2 641.8602294921875 2 641.859326 1281.7041 0.57948 0.00037195 -0.47085 -0.00030222 0.10863 6.9725E-05 641.8590730966646 103.66 0.76185 107.42 107.05 107.81 3.7627 588 115 6 0 0 0 0.32209 6 25467 25412;25441;25467;25500;25529;25554 13.615 6.5131 1 354320000 31545 1318 20088 20099 36212;36213;36214;36215;36216;36217 36214 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_1 2 641.8589477539062 2 641.859326 1281.7041 0.57957 0.000372 -0.77872 -0.00049983 -0.19915 -0.00012783 641.858406181211 104.08 0.45189 107.84 107.8 108.25 3.7627 167 73 6 0 0 0 0.37961 4 25615 25587;25613;25615;25640 10.8 3.6978 1 117240000 31546 1318 20088 20099 36218;36219;36220;36221 36220 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_1 2 641.8605346679688 2 641.859326 1281.7041 0.57852 0.00037133 0.16331 0.00010482 0.74183 0.00047615 641.8592680716092 104.61 2.0035 108.38 108.25 110.25 3.7627 824 299 3 0 0 0 0.32209 18 25711 25664;25677;25692;25711;25736;25792;25820;25845;25869;25873;25894;25909;25918;25936;25946;25961;25986;26014 13.615 6.5131 1 343190000 31547 1318 20088 20099 36222;36223;36224;36225;36226;36227;36228;36229;36230;36231;36232;36233;36234;36235;36236;36237;36238;36239 36225 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_2 3 642.3617553710938 2 641.859326 1281.7041 0.63459 0.00040732 0.42688 0.00027399 1.0615 0.00068131 641.8593965757052 103.64 0.31354 107.16 106.88 107.19 3.5231 137 47 3 0 0 0 0.37961 3 25161 25136;25161;25190 10.8 4.5937 1 192940000 31548 1318 20088 20099 36240;36241;36242 36241 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_2 3 642.3629760742188 2 641.859326 1281.7041 0.63443 0.00040722 0.70498 0.0004525 1.3394 0.00085972 641.8590947475645 104.4 0.33152 107.92 107.77 108.1 3.5289 89 53 2 0 0 0 0.37961 5 25388 25326;25353;25358;25379;25388 10.8 3.6978 1 116980000 31549 1318 20088 20099 36243;36244;36245;36246;36247 36247 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_2 3 641.8591918945312 2 641.859326 1281.7041 0.63507 0.00040762 -0.16039 -0.00010295 0.47467 0.00030467 641.8595496062984 104.7 0.72449 108.23 108.09 108.82 3.5289 386 113 9 0 0 0 0.37961 3 25404 25404;25433;25461 10.8 3.6978 1 292390000 31550 1318 20088 20099 36248;36249;36250 36248 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_2 3 641.859619140625 2 641.859326 1281.7041 0.63471 0.00040739 0.030679 1.9692E-05 0.66539 0.00042708 641.8592339477017 104.99 1.2618 108.52 108.44 109.7 3.5327 541 194 4 0 0 0 0.37961 6 25486 25486;25533;25558;25583;25591;25607 10.8 3.6978 1 97266000 31551 1318 20088 20099 36251;36252;36253;36254;36255;36256 36251 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_2 3 642.362060546875 2 641.859326 1281.7041 0.63486 0.00040749 -0.14345 -9.2077E-05 0.4914 0.00031541 641.8588763883355 107.26 0.40417 110.79 110.51 110.91 3.5345 124 57 4 0 0 0 0.52578 2 25944 25944;25975 7.1017 0.89594 1 682980 31552 1318 20088 20099 36257;36258 36257 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_2 3 641.8594970703125 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 104.14 1 107.67 107.17 108.17 3.5289 0 0 0 0.37931 1 25299 25299 7.1017 0.89594 1 31553 1318 20088 20099 36259 36259 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_2 3 641.8593139648438 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 105.67 1 109.21 108.71 109.71 3.5327 0 0 0 0.32232 1 25621 25621 10.8 2.644 1 31554 1318 20088 20099 36260 36260 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_2 3 641.8594970703125 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 105.74 1 109.27 108.77 109.77 3.5327 0 0 0 0.37931 1 25634 25634 7.1017 0.37856 1 31555 1318 20088 20099 36261 36261 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_2 3 641.8592529296875 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 105.89 1 109.42 108.92 109.92 3.5345 0 0 0 0.32232 1 25667 25667 10.8 3.6978 1 31556 1318 20088 20099 36262 36262 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_2 3 641.8589477539062 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 106.13 1 109.66 109.16 110.16 3.5345 0 0 0 0.37931 1 25718 25718 7.1017 0.89594 1 31557 1318 20088 20099 36263 36263 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_2 3 641.858642578125 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 106.25 1 109.78 109.28 110.28 3.5345 0 0 0 0.37931 1 25742 25742 7.1017 0.89594 1 31558 1318 20088 20099 36264 36264 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_3 4 641.859375 2 641.859326 1281.7041 0.51519 0.00033068 0.010553 6.7737E-06 0.52574 0.00033745 641.8591858521036 103.79 1.1214 107.31 106.92 108.04 3.5205 573 174 6 0 0 0 0.37961 7 25470 25390;25470;25500;25525;25550;25583;25615 10.8 3.6978 1 356210000 31559 1318 20088 20099 36265;36266;36267;36268;36269;36270;36271 36266 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN47_class_I_Rep_3 4 641.8594360351562 2 641.859326 1281.7041 0.5148 0.00033043 0.4324 0.00027754 0.9472 0.00060797 641.8594479059101 104.81 2.3238 108.34 108.17 110.49 3.5308 840 358 3 0 0 0 0.32209 18 25835 25653;25682;25710;25735;25760;25786;25811;25831;25835;25856;25860;25884;25890;25909;25935;25959;25984;26011 13.615 6.5131 1 217320000 31560 1318 20088 20099 36272;36273;36274;36275;36276;36277;36278;36279;36280;36281;36282;36283;36284;36285;36286;36287;36288;36289 36280 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_3 4 641.859619140625 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 103.6 1 107.1 106.6 107.6 3.5057 0 0 0 0.34167 1 25413 25413 9.544 2.4423 1 31561 1318 20088 20099 36290 36290 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_3 4 641.85888671875 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 104.45 1 107.97 107.47 108.47 3.5205 0 0 0 0.34167 1 25604 25604 9.544 2.4423 1 31562 1318 20088 20099 36291 36291 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN47_class_I_Rep_3 4 641.859130859375 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 104.57 1 108.09 107.59 108.59 3.5205 0 0 0 0.37931 1 25629 25629 7.1017 0 1 31563 1318 20088 20099 36292 36292 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_1 5 641.8598022460938 2 641.859326 1281.7041 0.43656 0.00028021 -0.31004 -0.00019901 0.12652 8.1207E-05 641.8594832957106 103.49 0.32504 107.11 106.83 107.16 3.6209 296 46 9 0 0 0 0.37961 2 24927 24927;24954 10.8 3.6978 1 364990000 31564 1318 20088 20099 36293;36294 36293 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_1 5 641.8596801757812 2 641.859326 1281.7041 0.43625 0.00028001 0.14911 9.5707E-05 0.58536 0.00037572 641.8593184499305 103.56 0.32934 107.18 107.15 107.48 3.6209 139 52 4 0 0 0 0.32209 1 24982 24982 13.615 6.5131 1 300630000 31565 1318 20088 20099 36295 36295 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_1 5 641.8589477539062 2 641.859326 1281.7041 0.43604 0.00027987 -0.12221 -7.844E-05 0.31383 0.00020143 641.8587226464355 103.75 0.48442 107.37 107.34 107.82 3.6209 193 78 3 0 0 0 0.32209 7 25020 25013;25020;25046;25065;25071;25095;25100 13.615 6.5131 1 180510000 31566 1318 20088 20099 36296;36297;36298;36299;36300;36301;36302 36297 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_1 5 641.8595581054688 2 641.859326 1281.7041 0.43656 0.00028021 -0.30286 -0.00019439 0.1337 8.5818E-05 641.8593981347177 104.4 1.2189 108.02 107.82 109.04 3.6247 926 178 8 0 0 0 0.30462 12 25304 25124;25126;25155;25186;25217;25246;25275;25304;25332;25340;25370;25386 15.248 8.1468 1 346550000 31567 1318 20088 20099 36303;36304;36305;36306;36307;36308;36309;36310;36311;36312;36313;36314 36310 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_1 5 641.8593139648438 2 641.859326 1281.7041 0.43648 0.00028016 -0.54519 -0.00034994 -0.10871 -6.978E-05 641.8589112161012 105.49 1.0192 109.12 109.02 110.04 3.6277 496 137 6 0 0 0 0.52578 7 25404 25404;25416;25433;25468;25504;25516;25530 7.1017 7.1017 1 4204000 31568 1318 20088 20099 36315;36316;36317;36318;36319;36320;36321 36315 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN48_class_I_Rep_1 5 641.859619140625 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 103.27 1 106.89 106.39 107.39 3.6209 0 0 0 0.32232 1 24897 24897 10.8 3.6978 1 31569 1318 20088 20099 36322 36322 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_2 6 641.8596801757812 2 641.859326 1281.7041 0.50001 0.00032094 0.34135 0.0002191 0.84136 0.00054004 641.8592665975119 103.39 1.1456 107.1 106.69 107.83 3.7108 495 177 4 0 0 0 0.32209 12 24486 24406;24432;24460;24486;24515;24526;24542;24552;24577;24584;24605;24630 13.615 6.5131 1 299040000 31570 1318 20088 20099 36323;36324;36325;36326;36327;36328;36329;36330;36331;36332;36333;36334 36326 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_2 6 641.8603515625 2 641.859326 1281.7041 0.49971 0.00032074 -1.2676 -0.00081363 -0.76791 -0.00049289 641.8582638005578 104.21 0.22412 107.9 107.81 108.03 3.6991 60 31 2 0 0 0 0.37961 3 24676 24637;24660;24676 10.8 3.6978 1 308110000 31571 1318 20088 20099 36335;36336;36337 36337 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_2 6 642.3616333007812 2 641.859326 1281.7041 0.49969 0.00032073 0.33897 0.00021757 0.83866 0.0005383 641.8593766071866 104.36 0.13483 108.06 108.03 108.17 3.6991 40 20 2 0 0 0 0.42924 1 24711 24711 9.544 3.3382 1 172800000 31572 1318 20088 20099 36338 36338 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_2 6 641.8595581054688 2 641.859326 1281.7041 0.4997 0.00032074 0.36074 0.00023154 0.86044 0.00055228 641.8594109659948 104.5 0.25307 108.2 108.17 108.42 3.6991 64 35 2 0 0 0 0.32209 2 24768 24741;24768 13.615 6.5131 1 146260000 31573 1318 20088 20099 36339;36340 36340 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_2 6 641.8596801757812 2 641.859326 1281.7041 0.50017 0.00032104 -0.35286 -0.00022649 0.1473 9.4549E-05 641.859301538046 104.72 0.77565 108.41 108.37 109.14 3.6901 614 117 7 0 0 0 0.32209 8 24795 24795;24823;24847;24854;24873;24881;24903;24918 13.615 6.5131 1 61244000 31574 1318 20088 20099 36341;36342;36343;36344;36345;36346;36347;36348 36341 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_2 6 641.859375 2 641.859326 1281.7041 0.49984 0.00032082 -0.074167 -4.7605E-05 0.42567 0.00027322 641.8589049657751 105.5 0.64816 109.19 109.09 109.74 3.6901 166 90 3 0 0 0 0.52578 4 24967 24967;24996;25009;25037 7.1017 0.89594 1 2163300 31575 1318 20088 20099 36349;36350;36351;36352 36349 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_3 7 641.8594360351562 2 641.859326 1281.7041 0.63748 0.00040917 0.55009 0.00035308 1.1876 0.00076225 641.8594943093789 103.32 0.28254 107.06 106.8 107.08 3.7434 84 42 2 0 0 0 0.37961 2 24365 24365;24389 10.8 3.6978 1 160140000 31576 1318 20088 20099 36353;36354 36353 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_3 7 641.85986328125 2 641.859326 1281.7041 0.6396 0.00041054 -0.50075 -0.00032141 0.13885 8.9122E-05 641.8593016883686 103.49 0.63568 107.24 106.8 107.44 3.7434 503 99 8 0 0 0 0.37961 3 24418 24418;24445;24471 10.8 3.6978 1 397330000 31577 1318 20088 20099 36355;36356;36357 36355 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_3 7 641.85986328125 2 641.859326 1281.7041 0.63801 0.00040951 0.9124 0.00058563 1.5504 0.00099515 641.859334385548 103.73 0.48004 107.48 107.41 107.89 3.7434 161 76 3 0 0 0 0.40526 3 24498 24498;24526;24554 10.151 3.9448 1 146420000 31578 1318 20088 20099 36358;36359;36360 36358 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_3 7 641.859375 2 641.859326 1281.7041 0.63789 0.00040943 0.074867 4.8054E-05 0.71275 0.00045749 641.8590421243995 104.27 0.39177 107.98 107.8 108.19 3.7192 148 59 3 0 0 0 0.37961 5 24604 24577;24598;24604;24636;24658 10.8 3.6978 1 188150000 31579 1318 20088 20099 36361;36362;36363;36364;36365 36363 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_3 7 641.8597412109375 2 641.859326 1281.7041 0.63788 0.00040943 0.3333 0.00021393 0.97118 0.00062336 641.8592888176547 104.55 0.66121 108.27 108.18 108.84 3.7192 140 95 3 0 0 0 0.37961 6 24687 24687;24716;24742;24769;24793;24798 10.8 3.6978 1 95068000 31580 1318 20088 20099 36366;36367;36368;36369;36370;36371 36366 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MSMS UPN48_class_I_Rep_3 7 641.8595581054688 2 641.859326 1281.7041 0.63884 0.00041004 -0.30503 -0.00019579 0.33381 0.00021426 641.8590139502396 105.16 0.99924 108.86 108.82 109.82 3.702 529 146 6 0 0 0 0.37961 7 24821 24821;24830;24885;24890;24913;24918;24947 10.8 3.6978 1 12794000 31581 1318 20088 20099 36372;36373;36374;36375;36376;36377;36378 36372 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MSMS UPN48_class_I_Rep_3 7 641.8593139648438 2 641.859326 1281.7041 NaN NaN NaN NaN NaN NaN NaN 103.98 1 107.73 107.23 108.23 3.7434 0 0 0 0.37931 1 24551 24551 7.1017 0.89594 1 31582 1318 20088 20099 36379 36379 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 641.859326 1281.7041 0.63473 0.00040741 -0.442 -0.0002837 0.19273 0.00012371 641.8587963328015 106.8 0.1428 110.33 110.24 110.39 3.5345 0.02091 -0.00023459 NaN 7.1017 44 21 4 NaN NaN NaN NaN 0 NaN NaN 0 661320 31583 1318 20088 20099 0.07451545000549231 PRKKSPNELVD 11 Unmodified _PRKKSPNELVD_ 0 0 0 nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C nc|ENSG00000088833|Q9UNZ2-4|NSFL1C MULTI-MATCH UPN48_class_I_Rep_1 5 2 641.859326 1281.7041 0.43592 0.0002798 0.11128 7.1426E-05 0.5472 0.00035122 641.8589096582807 106.75 0.06086 110.38 110.36 110.42 3.6299 0.073131 0.00047566 NaN 7.1017 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 61389 31584 1318 20088 20099 0.07451545000549231 PRKKWVQK 8 Unmodified _PRKKWVQK_ 0 0 0 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 MULTI-MSMS UPN46_class_I_Rep_3 1 535.3356323242188 2 535.335093 1068.65563 0.34557 0.000185 0.61174 0.00032749 0.95731 0.00051248 535.3353449493817 109.75 0.24743 109.75 109.65 109.9 0 45 20 3 0 0 0 0.82752 1 26991 26991 5.2307 5.2307 1 6899400 31585 720 20089 20100 36380 36380 0.12405140941996251 PRKKWVQK 8 Unmodified _PRKKWVQK_ 0 0 0 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 MULTI-MSMS UPN47_class_I_Rep_1 2 535.3350219726562 2 535.335093 1068.65563 0.49382 0.00026436 0.083277 4.4581E-05 0.5771 0.00030894 535.3350407894515 109.3 0.45529 112.91 112.76 113.22 3.6046 141 56 3 0 0 0 0.82752 1 26913 26913 0.69038 0 1 6436700 31586 720 20089 20100 36381 36381 0.12405140941996251 PRKKWVQK 8 Unmodified _PRKKWVQK_ 0 0 0 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 MULTI-SECPEP UPN47_class_I_Rep_1 2 535.3353271484375 2 535.335093 1068.65563 0.494 0.00026445 0.28827 0.00015432 0.78226 0.00041877 535.3351296228365 108.77 0.40431 112.41 112.21 112.62 3.6355 98 39 4 0 0 0 0.72333 1 26815 26815 9.3474 5.0182 1 125450000 31587 720 20089 20100 36382 36382 0.12405140941996251 PRKKWVQK 8 Unmodified _PRKKWVQK_ 0 0 0 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 MULTI-SECPEP UPN47_class_I_Rep_3 4 535.3350830078125 2 535.335093 1068.65563 0.47914 0.0002565 0.62951 0.000337 1.1086 0.0005935 535.3353825116959 109.29 0.41837 112.83 112.69 113.11 3.5347 133 56 3 0 0 0 0.72333 1 26811 26811 0.69038 0 1 5860200 31588 720 20089 20100 36383 36383 0.12405140941996251 PRKKWVQK 8 Unmodified _PRKKWVQK_ 0 0 0 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 ENSG00000006606|ENST00000005180|CCL26 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 535.335093 1068.65563 0.34557 0.000185 0.61174 0.00032749 0.95731 0.00051248 535.3353449493817 109.75 0.24743 109.75 109.65 109.9 0 0 0 NaN 5.2307 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6899400 31589 720 20089 20100 0.12405140941996251 PRKNNITA 8 Unmodified _PRKNNITA_ 0 0 0 REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|5|1|sense REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2640380859375 2 457.264333 912.514114 0.14542 6.6494E-05 -0.08624 -3.9434E-05 0.059176 2.7059E-05 457.26419941392857 85.78 0.71899 89.395 89.084 89.803 3.6153 170 91 2 0 0 0 0.82752 1 21369 21369 0.69038 0 1 330630 + 31590 23812 20090 20101 36384 36384 0.05435722848835667 PRKNNITA 8 Unmodified _PRKNNITA_ 0 0 0 REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|5|1|sense REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|5|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 457.264333 912.514114 0.2046 9.3558E-05 0.059982 2.7427E-05 0.26459 0.00012099 457.2641910711951 89.268 0.29021 89.268 89.257 89.547 0 -0.03863 8.0361E-05 NaN 0.69038 43 28 2 NaN NaN NaN NaN 0 NaN NaN 0 635060 + 31591 23812 20090 20101 0.05435722848835667 PRKNNITA 8 Unmodified _PRKNNITA_ 0 0 0 REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|5|1|sense REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|5|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 457.264333 912.514114 0.032072 1.4665E-05 0.023283 1.0646E-05 0.055355 2.5312E-05 457.2642016201171 85.823 0.81414 89.256 88.915 89.729 3.4329 -0.05053 4.6799E-05 NaN 0.69038 206 107 3 NaN NaN NaN NaN 0 NaN NaN 0 396720 + 31592 23812 20090 20101 0.05435722848835667 PRKPRKAYF 9 Unmodified _PRKPRKAYF_ 0 0 0 L1M4a1_dup501|chr3:4392762-4393333:-|1.573036995335743|0.0057963473804271|8.08|151.0|34|1|anti-sense L1M4a1_dup501|chr3:4392762-4393333:-|1.573036995335743|0.0057963473804271|8.08|151.0|34|1|anti-sense L1M4a1_dup501|chr3:4392762-4393333:-|1.573036995335743|0.0057963473804271|8.08|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_3 7 581.8436889648438 2 581.845825 1161.6771 NaN NaN NaN NaN NaN NaN NaN 88.897 1 92.726 92.226 93.226 3.8293 0 0 0 0.40038 1 21095 21095 0.6015 0.076735 1 31593 8956 20091 20102 36385 36385 0.1027252597068582 PRKTHRGL 8 Unmodified _PRKTHRGL_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-SECPEP UPN47_class_I_Rep_1 2 482.7952880859375 2 482.793592 963.572632 0.25114 0.00012125 2.4038 0.0011605 2.6549 0.0012818 482.7952891980879 113.72 0.047661 117.29 117.27 117.31 3.572 5 4 2 0 0 0 0.72333 1 28076 28076 0.69038 0 1 17927 31594 1491 20092 20103 36386 36386 0.08938824213998942 PRKVVRKHLV 10 Unmodified _PRKVVRKHLV_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MSMS UPN46_class_I_Rep_3 1 616.4072875976562 2 616.409124 1230.80369 NaN NaN NaN NaN NaN NaN NaN 98.739 1 98.739 98.239 99.239 0 0 0 0 0.53105 1 24041 24041 0.40072 0.1317 1 + 31595 21899 20093 20104 36387 36387 0.19752452195825754 PRLDIEKE 8 Unmodified _PRLDIEKE_ 0 0 0 nc|ENSG00000186862|Q9H5P4-2|PDZD7;nc|ENSG00000186862|Q9H5P4-1|PDZD7 nc|ENSG00000186862|Q9H5P4-2|PDZD7 nc|ENSG00000186862|Q9H5P4-2|PDZD7 MSMS UPN47_class_I_Rep_1 2 500.279296875 2 500.277106 998.53966 NaN NaN NaN NaN NaN NaN NaN 68.905 1 72.273 71.773 72.773 3.3678 0 0 0 0.40659 1 16664 16664 1.8442 0 1 31596 16782 20094 20105 36388 36388 0.040331525806209356 PRLFKFDH 8 Unmodified _PRLFKFDH_ 0 0 0 Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|69|1|anti-sense Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|69|1|anti-sense Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|69|1|anti-sense MSMS UPN48_class_I_Rep_3 7 530.2914428710938 2 530.290351 1058.56615 NaN NaN NaN NaN NaN NaN NaN 26.885 1 30.64 30.14 31.14 3.7555 0 0 0 0.40746 1 3462 3462 0.69038 0 1 31597 33156 20095 20106 36389 36389 0.03920886262608292 PRLFRRVLLNY 11 Unmodified _PRLFRRVLLNY_ 0 0 0 REV__L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|245|1|anti-sense REV__L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|245|1|anti-sense MSMS UPN46_class_I_Rep_3 1 482.9593505859375 3 482.961256 1445.86194 NaN NaN NaN NaN NaN NaN NaN 21.38 1 21.38 20.88 21.88 0 0 0 0 0.38417 1 2381 2381 0.40827 0.26837 1 + 31598 29541 20096 20107 36390 36390 0.15684089050478178 PRLFRWQRRR 10 Unmodified _PRLFRWQRRR_ 0 0 0 REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF MSMS UPN46_class_I_Rep_3 1 490.9582824707031 3 490.96036 1469.85925 NaN NaN NaN NaN NaN NaN NaN 72.423 1 72.423 71.923 72.923 0 0 0 0 0.53105 1 16738 16738 0.15932 0.064481 1 + 31599 22968 20097 20108 36391 36391 0.1431167843613821 PRLFTRNKKEK 11 Unmodified _PRLFTRNKKEK_ 0 0 0 REV__ENST00000554535.2_1_14:35899543-35899834:+|nuORF REV__ENST00000554535.2_1_14:35899543-35899834:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.94415283203125 3 472.952649 1415.83612 NaN NaN NaN NaN NaN NaN NaN 41.175 1 44.681 44.181 45.181 3.506 0 0 0 0.38417 1 7474 7474 0.50596 0 1 + 31600 22983 20098 20109 36392 36392 0.1448319480812188 PRLKALPPLS 10 Unmodified _PRLKALPPLS_ 0 0 0 REV__nc|ENSG00000123094|Q8NHQ8-2|RASSF8 REV__nc|ENSG00000123094|Q8NHQ8-2|RASSF8 MSMS UPN48_class_I_Rep_3 7 546.7708129882812 2 546.350409 1090.68626 NaN NaN NaN NaN NaN NaN NaN 35.583 1 39.249 38.749 39.749 3.6667 0 0 0 0.53105 1 5789 5789 1.4819 0 1 + 31601 18771 20099 20110 36393 36393 0.14454874536363604 PRLLPRWA 8 Unmodified _PRLLPRWA_ 0 0 0 ENSG00000102313|ENST00000218436|ITIH6 ENSG00000102313|ENST00000218436|ITIH6 ENSG00000102313|ENST00000218436|ITIH6 MULTI-MSMS UPN46_class_I_Rep_3 1 504.8094177246094 2 504.808711 1007.60287 0.29732 0.00015009 0.66561 0.000336 0.96292 0.00048609 504.809332913545 42.637 0.12585 42.637 42.584 42.71 0 11 5 3 0 0 0 0.82752 1 8464 8464 2.5775 0 1 625560 31602 1610 20100 20111 36394 36394 0.0993718287916181 PRLLTSEQRF 10 Unmodified _PRLLTSEQRF_ 0 0 0 ENST00000358912.4_1_2:64335433-64371452:-|nuORF ENST00000358912.4_1_2:64335433-64371452:-|nuORF ENST00000358912.4_1_2:64335433-64371452:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 416.2348937988281 3 416.234933 1245.68297 0.09895 4.1186E-05 0.90192 0.00037541 1.0009 0.0004166 416.23517441742734 103.57 0.18593 107.35 107.23 107.42 3.7788 35 27 2 0 0 0 0.54822 1 25446 25446 3.0723 0.44103 1 10870000 31603 6302 20101 20112 36395 36395 0.0699557969169291 PRLLTSEQRF 10 Unmodified _PRLLTSEQRF_ 0 0 0 ENST00000358912.4_1_2:64335433-64371452:-|nuORF ENST00000358912.4_1_2:64335433-64371452:-|nuORF ENST00000358912.4_1_2:64335433-64371452:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 416.235107421875 3 416.234933 1245.68297 0.098948 4.1185E-05 -0.013946 -5.8047E-06 0.085002 3.5381E-05 416.23484818647347 104.79 0.19699 108.53 108.49 108.69 3.7395 39 30 2 0 0 0 0.54822 1 25750 25750 3.0723 3.0723 1 4399200 31604 6302 20101 20112 36396 36396 0.0699557969169291 PRLPDRVYIH 10 Unmodified _PRLPDRVYIH_ 0 0 0 nc|ENSG00000149922|O95947-2|TBX6;ENSG00000149922|ENST00000395224|TBX6 nc|ENSG00000149922|O95947-2|TBX6 nc|ENSG00000149922|O95947-2|TBX6 MSMS UPN48_class_I_Rep_2 6 633.3699951171875 2 633.359296 1264.70404 NaN NaN NaN NaN NaN NaN NaN 77.502 1 81.113 80.613 81.613 3.6116 0 0 0 0.53105 1 18346 18346 3.2813 0.54611 1 31605 3554 20102 20113 36397 36397 0.08227589791226819 PRLPKVLGLH 10 Unmodified _PRLPKVLGLH_ 0 0 0 AluSx_dup45783|chr7:101954890-101955178:+|1.3193530462621648|0.0112098379306191|6.88|151.0|13|1|anti-sense AluSx_dup45783|chr7:101954890-101955178:+|1.3193530462621648|0.0112098379306191|6.88|151.0|13|1|anti-sense AluSx_dup45783|chr7:101954890-101955178:+|1.3193530462621648|0.0112098379306191|6.88|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 565.2882690429688 2 565.36385 1128.71315 NaN NaN NaN NaN NaN NaN NaN 66.764 1 70.022 69.522 70.522 3.2588 0 0 0 0.53105 1 16059 16059 0.45834 0.057624 1 31606 285 20103 20114 36398 36398 0.15393983147532708 PRLPRKLKVP 10 Unmodified _PRLPRKLKVP_ 0 0 0 ENST00000569957.5_1_16:30012641-30012857:+|nuORF ENST00000569957.5_1_16:30012641-30012857:+|nuORF ENST00000569957.5_1_16:30012641-30012857:+|nuORF MSMS UPN46_class_I_Rep_3 1 401.8780517578125 3 401.939792 1202.79755 NaN NaN NaN NaN NaN NaN NaN 25.618 1 25.618 25.118 26.118 0 0 0 0 0.53105 1 3541 3541 0.69767 0.1345 1 31607 7509 20104 20115 36399 36399 0.20425933964293108 PRLQLRKFWL 10 Unmodified _PRLQLRKFWL_ 0 0 0 REV__ENST00000358746.6_1_5:94805553-94805601:-|nuORF REV__ENST00000358746.6_1_5:94805553-94805601:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 452.947265625 3 452.946946 1355.81901 0.19283 8.7343E-05 1.1896 0.00053884 1.3825 0.00062618 452.9474370776437 105.44 0.17419 105.44 105.34 105.52 0 31 21 2 0 0 0 0.56444 1 25724 25724 0.69767 0.19171 1 8426500 + 31608 21886 20105 20116 36400 36400 0.1553331899301611 PRLRLRRLRI 10 Unmodified _PRLRLRRLRI_ 0 0 0 REV__ENST00000238936.8_2_10:104221160-104225841:+|nuORF REV__ENST00000238936.8_2_10:104221160-104225841:+|nuORF MSMS UPN48_class_I_Rep_3 7 450.3077392578125 3 450.30899 1347.90514 NaN NaN NaN NaN NaN NaN NaN 44.325 1 47.962 47.462 48.462 3.6372 0 0 0 0.53105 1 8358 8358 0.15932 0.064481 1 + 31609 21503 20106 20117 36401 36401 0.2451032361839225 PRMRWVKVFTL 11 Unmodified _PRMRWVKVFTL_ 0 0 0 MER70B_dup60|chr2:202884908-202885483:+|1.001971026238338|0.2518918974346785|1.99|151.0|5|1|sense MER70B_dup60|chr2:202884908-202885483:+|1.001971026238338|0.2518918974346785|1.99|151.0|5|1|sense MER70B_dup60|chr2:202884908-202885483:+|1.001971026238338|0.2518918974346785|1.99|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 478.2805480957031 3 478.279708 1431.8173 NaN NaN NaN NaN NaN NaN NaN 110.73 1 110.73 110.23 111.23 0 0 0 0 0.38417 1 27274 27274 0.45452 0 1 31610 16200 20107 20118 36402 36402 0.11865941912742528 PRNAKFPPCC 10 Unmodified _PRNAKFPPCC_ 0 0 0 HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|163|3|anti-sense HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|163|3|anti-sense HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|163|3|anti-sense MSMS UPN48_class_I_Rep_1 5 566.7742919921875 2 566.773154 1131.53175 NaN NaN NaN NaN NaN NaN NaN 22.882 1 26.443 25.943 26.943 3.5605 0 0 0 0.53105 1 2298 2298 1.6526 0 1 31611 8228 20108 20119 36403 36403 -0.028750212121394725 PRNFPPRF 8 Unmodified _PRNFPPRF_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS UPN48_class_I_Rep_1 5 515.7821655273438 2 515.782693 1029.55083 NaN NaN NaN NaN NaN NaN NaN 59.666 1 63.146 62.646 63.646 3.4801 0 0 0 0.40404 1 13130 13130 5.2307 0 1 31612 4701 20109 20120 36404 36404 0.03724019465425954 PRNFPPRF 8 Unmodified _PRNFPPRF_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS UPN48_class_I_Rep_3 7 515.7816772460938 2 515.782693 1029.55083 0.30858 0.00015916 -1.4967 -0.00077197 -1.1881 -0.00061281 515.7822918488482 59.346 0.39516 62.869 62.628 63.023 3.5231 34 25 2 0 0 0 0.82752 1 12941 12941 8.5933 3.8373 1 91952 31613 4701 20109 20120 36405 36405 0.03724019465425954 PRNLAKIVEQ 10 Unmodified _PRNLAKIVEQ_ 0 0 0 REV__L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|52|1|sense REV__L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|52|1|sense MSMS UPN46_class_I_Rep_3 1 584.3485107421875 2 584.345855 1166.67716 NaN NaN NaN NaN NaN NaN NaN 37.213 1 37.213 36.713 37.713 0 0 0 0 0.53105 1 6974 6974 1.3295 0 1 + 31614 29359 20110 20121 36406 36406 0.10048481180024282 PRNPPHFR 8 Unmodified _PRNPPHFR_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MSMS UPN48_class_I_Rep_2 6 510.7773132324219 2 510.777942 1019.54133 NaN NaN NaN NaN NaN NaN NaN 47.118 1 50.867 50.367 51.367 3.7494 0 0 0 0.40746 1 9282 9282 0.69038 0 1 31615 1432 20111 20122 36407 36407 0.032342511798901796 PRPASPGIL 9 Unmodified _PRPASPGIL_ 0 0 0 ENST00000409858.7_1_9:139977177-139977723:+|nuORF ENST00000409858.7_1_9:139977177-139977723:+|nuORF ENST00000409858.7_1_9:139977177-139977723:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 454.27117919921875 2 454.271627 906.528701 0.17832 8.1004E-05 -0.39787 -0.00018074 -0.21956 -9.9738E-05 454.27145224561025 29.457 0.4356 33.089 32.897 33.333 3.6316 67 48 2 0 0 0 0.47493 1 4220 4220 3.2813 0 1 62241 31616 6627 20112 20123 36408 36408 0.0716979499700301 PRPGRPRRPRR 11 Unmodified _PRPGRPRRPRR_ 0 0 0 ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 467.6236877441406 3 467.62386 1399.84975 0.23297 0.00010894 -0.25362 -0.0001186 -0.020653 -9.6578E-06 467.62364765659873 107.22 0.092903 107.22 107.17 107.26 0 29 11 3 0 0 0 0.67113 1 26161 26161 1.3296 0 1 436280 31617 6061 20113 20124 36409 36409 0.16581910150603107 PRPGRPRRPRR 11 Unmodified _PRPGRPRRPRR_ 0 0 0 ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF MSMS UPN46_class_I_Rep_3 1 467.6236877441406 3 467.62386 1399.84975 NaN NaN NaN NaN NaN NaN NaN 106.64 1 106.64 106.14 107.14 0 0 0 0 0.38417 1 26006 26006 2.8433 0 1 31618 6061 20113 20124 36410 36410 0.16581910150603107 PRPGRPRRPRR 11 Unmodified _PRPGRPRRPRR_ 0 0 0 ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 467.6236877441406 3 467.62386 1399.84975 0.010489 4.905E-06 -0.12122 -5.6686E-05 -0.11073 -5.1781E-05 467.6236807306814 103.13 0.82733 106.64 106.18 107.01 3.5057 284 122 3 0 0 0 0.65439 4 25355 25253;25278;25355;25380 2.8433 0 1 853870 31619 6061 20113 20124 36411;36412;36413;36414 36413 0.16581910150603107 PRPGRPRRPRR 11 Unmodified _PRPGRPRRPRR_ 0 0 0 ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 467.62386 1399.84975 0.23297 0.00010894 -0.25362 -0.0001186 -0.020653 -9.6578E-06 467.62364765659873 107.22 0.092903 107.22 107.17 107.26 0 0 0 NaN 1.3296 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 436280 31620 6061 20113 20124 0.16581910150603107 PRPGRPRRPRR 11 Unmodified _PRPGRPRRPRR_ 0 0 0 ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 467.62386 1399.84975 0.069334 3.2422E-05 -0.21948 -0.00010263 -0.15014 -7.021E-05 467.6236761886242 102.89 0.56171 106.51 106.3 106.87 3.6164 -0.14265 2.3527E-05 NaN 2.8433 138 77 3 NaN NaN NaN NaN 0 NaN NaN 0 3743200 31621 6061 20113 20124 0.16581910150603107 PRPGRPRRPRR 11 Unmodified _PRPGRPRRPRR_ 0 0 0 ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF ENST00000296350.9_1_3:196729451-196730141:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 467.62386 1399.84975 0.19843 9.2789E-05 -0.31096 -0.00014541 -0.11253 -5.2622E-05 467.6236038293702 102.68 0.97578 106.45 106 106.97 3.776 -0.20046 -0.00010481 NaN 2.8433 385 133 4 NaN NaN NaN NaN 0 NaN NaN 0 4013700 31622 6061 20113 20124 0.16581910150603107 PRPHAPRYY 9 Unmodified _PRPHAPRYY_ 0 0 0 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 MULTI-SECPEP UPN47_class_I_Rep_3 4 579.2772827148438 2 578.804157 1155.59376 0.33909 0.00019627 -0.64025 -0.00037058 -0.30117 -0.00017432 579.3048512574898 58.391 0.065544 61.557 61.51 61.575 3.1658 4 2 2 0 0 0 0.11959 1 13554 13554 7.9102 0 1 43676 31623 5260 20114 20125 36415 36415 0.022187895228398702 PRPHAPRYY 9 Unmodified _PRPHAPRYY_ 0 0 0 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 MULTI-SECPEP UPN47_class_I_Rep_3 4 579.2772827148438 2 578.804157 1155.59376 0.33839 0.00019586 -0.92881 -0.0005376 -0.59042 -0.00034174 578.8036943362316 58.462 0.088886 61.628 61.593 61.682 3.1658 6 5 2 0 0 0 0.11959 1 13597 13597 7.9102 0.62092 1 57830 31624 5260 20114 20125 36416 36416 0.022187895228398702 PRPHFLYF 8 Unmodified _PRPHFLYF_ 0 0 0 REV__Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|37|3|sense REV__Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|37|3|sense MSMS UPN48_class_I_Rep_1 5 538.7869262695312 2 538.787444 1075.56034 NaN NaN NaN NaN NaN NaN NaN 87.221 1 90.839 90.339 91.339 3.6187 0 0 0 0.38547 1 20898 20898 13.508 0 1 + 31625 32653 20115 20126 36417 36417 0.025577877509249447 PRPHPADW 8 Unmodified _PRPHPADW_ 0 0 0 LTR12__dup208|chr6:37962487-37963192:+|1.9879987110853576|0.0187974097905854|6.72|151.0|30|1|anti-sense LTR12__dup208|chr6:37962487-37963192:+|1.9879987110853576|0.0187974097905854|6.72|151.0|30|1|anti-sense LTR12__dup208|chr6:37962487-37963192:+|1.9879987110853576|0.0187974097905854|6.72|151.0|30|1|anti-sense MSMS UPN46_class_I_Rep_3 1 488.24298095703125 2 488.243401 974.472249 NaN NaN NaN NaN NaN NaN NaN 116.32 1 116.32 115.82 116.82 0 0 0 0 0.40746 1 28789 28789 0.69038 0 1 31626 15523 20116 20127 36418 36418 -0.016008328396878824 PRPLPRKV 8 Unmodified _PRPLPRKV_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS UPN47_class_I_Rep_2 3 481.8345642089844 2 481.816536 961.618519 NaN NaN NaN NaN NaN NaN NaN 111.29 1 114.82 114.32 115.32 3.5226 0 0 0 0.40746 1 27085 27085 0.69038 0 1 31627 2592 20117 20128 36419 36419 0.13617469396228898 PRPLRTRH 8 Unmodified _PRPLRTRH_ 0 0 0 ENSG00000163738.18,MTHFD2L,chr4,+,I9.1,74175404,74180686|57|5.47|4|intron ENSG00000163738.18,MTHFD2L,chr4,+,I9.1,74175404,74180686|57|5.47|4|intron ENSG00000163738.18,MTHFD2L,chr4,+,I9.1,74175404,74180686|57|5.47|4|intron MSMS UPN48_class_I_Rep_2 6 516.7971801757812 2 516.812316 1031.61008 NaN NaN NaN NaN NaN NaN NaN 31.837 1 35.478 34.978 35.978 3.641 0 0 0 0.40753 1 4841 4841 0.6015 0 1 31628 4035 20118 20129 36420 36420 0.09553915479591524 PRPLSIFLS 9 Unmodified _PRPLSIFLS_ 0 0 0 L1MB4_dup6434|chr12:118319272-118320270:+|4.80324558344102|0.0209310260371907|7.84|151.0|53|2|anti-sense L1MB4_dup6434|chr12:118319272-118320270:+|4.80324558344102|0.0209310260371907|7.84|151.0|53|2|anti-sense L1MB4_dup6434|chr12:118319272-118320270:+|4.80324558344102|0.0209310260371907|7.84|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_3 7 515.3063354492188 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 87.327 1 91.117 90.617 91.617 3.7905 0 0 0 0.36505 1 20719 20719 7.2892 0 1 31629 10552 20119 20130 36421 36421 0.08870923719587154 PRPNGGVERR 10 Unmodified _PRPNGGVERR_ 0 0 0 REV__SVA_B_dup9|chr1:32803739-32805221:-|1.6487061072235232|0.1045372781429908|3.98|151.0|6|1|sense REV__SVA_B_dup9|chr1:32803739-32805221:-|1.6487061072235232|0.1045372781429908|3.98|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 569.31640625 2 569.31542 1136.61629 NaN NaN NaN NaN NaN NaN NaN 28.81 1 32.441 31.941 32.941 3.6311 0 0 0 0.53105 1 4010 4010 3.5965 0 1 + 31630 32190 20120 20131 36422 36422 0.05344388920457277 PRPPAHRYV 9 Unmodified _PRPPAHRYV_ 0 0 0 REV__AluSc5_dup3564|chrX:1521024-1521345:-|2.389651327194059|0.0188790483242322|6.98|151.0|19|2|anti-sense REV__AluSc5_dup3564|chrX:1521024-1521345:-|2.389651327194059|0.0188790483242322|6.98|151.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.8058471679688 2 546.8067 1091.59885 0.42266 0.00023111 -1.4162 -0.00077439 -0.99354 -0.00054327 546.8060743239524 55.144 0.47218 58.322 58.019 58.491 3.1779 36 29 2 0 0 0 0.46434 1 12547 12547 4.3292 4.3292 1 69180 + 31631 17089 20121 20132 36423 36423 0.056710933854674295 PRPPSIVLDL 10 Unmodified _PRPPSIVLDL_ 0 0 0 REV__AluSc_dup14012|chr7:50361596-50361890:+|1.38379411938314|0.0166820244869019|6.37|151.0|13|1|anti-sense REV__AluSc_dup14012|chr7:50361596-50361890:+|1.38379411938314|0.0166820244869019|6.37|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_2 6 553.8297119140625 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 81.895 1 85.552 85.052 86.052 3.6567 0 0 0 0.53105 1 19447 19447 3.2813 0.97858 1 + 31632 17075 20122 20133 36424 36424 0.10094577919812764 PRPQRRKFI 9 Unmodified _PRPQRRKFI_ 0 0 0 REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|30|3|anti-sense REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|30|3|anti-sense MSMS UPN48_class_I_Rep_2 6 599.37255859375 2 599.369998 1196.72544 NaN NaN NaN NaN NaN NaN NaN 97.259 1 101.04 100.54 101.54 3.779 0 0 0 0.4007 1 23113 23113 0.52476 0 1 + 31633 31732 20123 20134 36425 36425 0.13495019610604686 PRPQWNKNRN 10 Unmodified _PRPQWNKNRN_ 0 0 0 L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|7|1|sense L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|7|1|sense L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 437.2356872558594 3 437.233927 1308.67995 NaN NaN NaN NaN NaN NaN NaN 44.94 1 48.296 47.796 48.796 3.3556 0 0 0 0.53105 1 9422 9422 0.69767 0 1 31634 13557 20124 20135 36426 36426 0.03795749357573186 PRPSYKIY 8 Unmodified _PRPSYKIY_ 0 0 0 REV__L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|78|2|sense REV__L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|78|2|sense MSMS UPN47_class_I_Rep_2 3 512.2869873046875 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 28.443 1 31.942 31.442 32.442 3.4986 0 0 0 0.40625 1 4414 4414 2.3027 0 1 + 31635 30434 20125 20136 36427 36427 0.04454064168464811 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.3066101074219 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 53.316 1 53.316 52.816 53.816 0 0 0 0 0.40746 1 11464 11464 0.69038 0 1 31636 15399 20126 20137 36428 36428 0.12525763159305825 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.30670166015625 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 66.225 1 66.225 65.725 66.725 0 0 0 0 0.40746 1 15014 15014 0.69038 0 1 31637 15399 20126 20137 36429 36429 0.12525763159305825 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.3067321777344 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 71.484 1 71.484 70.984 71.984 0 0 0 0 0.40746 1 16470 16470 0.69038 0 1 31638 15399 20126 20137 36430 36430 0.12525763159305825 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.3060302734375 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 71.862 1 71.862 71.362 72.362 0 0 0 0 0.40746 1 16579 16579 0.69038 0 1 31639 15399 20126 20137 36431 36431 0.12525763159305825 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.717041015625 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 75.624 1 75.624 75.124 76.124 0 0 0 0 0.40746 1 17594 17594 0.69038 0 1 31640 15399 20126 20137 36432 36432 0.12525763159305825 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.3067932128906 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 75.773 1 75.773 75.273 76.273 0 0 0 0 0.40746 1 17639 17639 0.69038 0 1 31641 15399 20126 20137 36433 36433 0.12525763159305825 PRPTVIRL 8 Unmodified _PRPTVIRL_ 0 0 0 L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 476.30645751953125 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 84.51 1 84.51 84.01 85.01 0 0 0 0 0.40746 1 20108 20108 0.69038 0 1 31642 15399 20126 20137 36434 36434 0.12525763159305825 PRQHLFFF 8 Unmodified _PRQHLFFF_ 0 0 0 L1PB1_dup11012|chr14:50315690-50317486:-|1.399843637465695|0.2173220557588792|2.69|151.0|68|1|anti-sense L1PB1_dup11012|chr14:50315690-50317486:-|1.399843637465695|0.2173220557588792|2.69|151.0|68|1|anti-sense L1PB1_dup11012|chr14:50315690-50317486:-|1.399843637465695|0.2173220557588792|2.69|151.0|68|1|anti-sense MSMS UPN47_class_I_Rep_1 2 546.2916259765625 2 546.292894 1090.57123 NaN NaN NaN NaN NaN NaN NaN 30.89 1 34.634 34.134 35.134 3.7449 0 0 0 0.40746 1 5108 5108 0.69038 0 1 31643 15002 20127 20138 36435 36435 0.02957190125221132 PRQIRFFT 8 Unmodified _PRQIRFFT_ 0 0 0 MER4B-int_dup1332|chr18:36150479-36151078:-|1.3390880480472551|0.0205916456891195|6.02|151.0|36|3|anti-sense MER4B-int_dup1332|chr18:36150479-36151078:-|1.3390880480472551|0.0205916456891195|6.02|151.0|36|3|anti-sense MER4B-int_dup1332|chr18:36150479-36151078:-|1.3390880480472551|0.0205916456891195|6.02|151.0|36|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 532.2821044921875 2 532.803626 1063.5927 0.47737 0.00025435 3.8232 0.002037 4.3006 0.0022914 533.3080312873956 58.915 0.26693 62.438 62.276 62.543 3.5231 28 18 2 0 0 0 0.72333 1 12843 12843 9.3474 0 1 100780 31644 16022 20128 20139 36436 36436 0.06344575153957521 PRQPAQNR 8 Unmodified _PRQPAQNR_ 0 0 0 ENST00000460658.5_1_22:31484094-31491444:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN ENST00000460658.5_1_22:31484094-31491444:+|nuORF ENST00000460658.5_1_22:31484094-31491444:+|nuORF MSMS UPN47_class_I_Rep_2 3 483.6465759277344 2 483.765032 965.515511 NaN NaN NaN NaN NaN NaN NaN 79.934 1 83.303 82.803 83.803 3.3694 0 0 0 0.40625 1 19914 19914 2.3027 0.4585 1 31645 5032 20129 20140 36437 36437 0.031373569376114574 PRQPRPPHL 9 Unmodified _PRQPRPPHL_ 0 0 0 ENST00000397068.7_2_11:3661554-3663324:-|nuORF ENST00000397068.7_2_11:3661554-3663324:-|nuORF ENST00000397068.7_2_11:3661554-3663324:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 550.2947387695312 2 549.319974 1096.6254 0.39644 0.00021777 -2.7537 -0.0015127 -2.3573 -0.0012949 549.3183480325748 95.643 0.18826 95.643 95.603 95.791 0 22 19 2 0 0 0 0.48846 1 23235 23235 1.8442 0.36234 1 282660 31646 6571 20130 20141 36438 36438 0.08094782276793921 PRQRHHLRSRV 11 Unmodified _PRQRHHLRSRV_ 0 0 0 AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|1|1|sense AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|1|1|sense AluSq2_dup55166|chr19:10668329-10668636:-|1.3096901375726897|0.0232307498626466|5.82|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 481.28369140625 3 481.283503 1440.82868 0.11995 5.773E-05 0.45487 0.00021892 0.57482 0.00027665 481.2837588386428 106.18 0.49368 109.8 109.57 110.07 3.6277 155 66 3 0 0 0 0.68132 2 25552 25552;25580 0.40827 0.27183 1 254470 31647 265 20131 20142 36439;36440 36439 0.12589900051079894 PRQRHIKQ 8 Unmodified _PRQRHIKQ_ 0 0 0 L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|42|2|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|42|2|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|42|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.81689453125 2 531.817599 1061.62064 0.32665 0.00017372 -0.86936 -0.00046234 -0.54271 -0.00028862 531.8170820660202 79.338 0.58247 82.694 82.285 82.867 3.3554 89 54 2 0 0 0 0.82752 1 19709 19709 2.3027 0 1 110460 31648 8488 20132 20143 36441 36441 0.09229898134026371 PRQRHLPAA 9 Unmodified _PRQRHLPAA_ 0 0 0 chr19:687188-691858|151|613.83|0.76|9.65|-|2|PRSS57,PRSS57|1 chr19:687188-691858|151|613.83|0.76|9.65|-|2|PRSS57,PRSS57|1 chr19:687188-691858|151|613.83|0.76|9.65|-|2|PRSS57,PRSS57|1 MULTI-MSMS UPN47_class_I_Rep_1 2 523.3046875 2 523.304324 1044.5941 0.34109 0.00017849 -1.9778 -0.001035 -1.6367 -0.00085652 523.3030302459525 80.089 0.18966 83.554 83.409 83.599 3.465 35 27 2 0 0 0 0.46434 1 19947 19947 4.3292 0.73274 1 420530 31649 596 20133 20144 36442 36442 0.07358209242693192 PRQRHLPAA 9 Unmodified _PRQRHLPAA_ 0 0 0 chr19:687188-691858|151|613.83|0.76|9.65|-|2|PRSS57,PRSS57|1 chr19:687188-691858|151|613.83|0.76|9.65|-|2|PRSS57,PRSS57|1 chr19:687188-691858|151|613.83|0.76|9.65|-|2|PRSS57,PRSS57|1 MULTI-MSMS UPN47_class_I_Rep_2 3 523.303466796875 2 523.304324 1044.5941 0.092652 4.8485E-05 -1.6494 -0.00086313 -1.5567 -0.00081464 523.303222974078 80.459 0.26287 83.828 83.758 84.021 3.3694 46 37 2 0 0 0 0.46434 1 20023 20023 4.3292 0.38484 1 309200 31650 596 20133 20144 36443 36443 0.07358209242693192 PRQRPQLAAP 10 Unmodified _PRQRPQLAAP_ 0 0 0 REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF REV__ENST00000592274.1_1_19:3611803-3612905:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.3311157226562 2 567.330539 1132.64652 0.46299 0.00026267 0.17738 0.00010063 0.64037 0.0003633 567.3305646056336 87.094 0.10046 87.094 87.035 87.136 0 20 10 2 0 0 0 0.56033 1 20842 20842 3.5965 0.31518 1 2363300 + 31651 23178 20134 20145 36444 36444 0.08550747585650242 PRRCFLVV 8 Unmodified _PRRCFLVV_ 0 0 0 L1M4_dup8026|chr7:99081953-99083020:-|1.1288474027997304|0.1626605719700393|2.79|151.0|5|1|sense L1M4_dup8026|chr7:99081953-99083020:-|1.1288474027997304|0.1626605719700393|2.79|151.0|5|1|sense L1M4_dup8026|chr7:99081953-99083020:-|1.1288474027997304|0.1626605719700393|2.79|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 495.2904357910156 2 495.289297 988.564041 NaN NaN NaN NaN NaN NaN NaN 75.136 1 78.626 78.126 79.126 3.49 0 0 0 0.40738 1 17786 17786 0.79363 0 1 31652 8911 20135 20146 36445 36445 0.069301342531503 PRRDNKTK 8 Unmodified _PRRDNKTK_ 0 0 0 HAL1_dup8207|chr5:170237473-170239450:+|1.3157386708888872|0.0816381471741119|4.01|151.0|1|1|sense HAL1_dup8207|chr5:170237473-170239450:+|1.3157386708888872|0.0816381471741119|4.01|151.0|1|1|sense HAL1_dup8207|chr5:170237473-170239450:+|1.3157386708888872|0.0816381471741119|4.01|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.794677734375 2 507.793789 1013.57303 0.342 0.00017367 1.6448 0.0008352 1.9868 0.0010089 507.79436638154846 107.81 0.15224 111.48 111.43 111.58 3.6724 15 9 2 0 0 0 0.82752 1 26437 26437 7.9102 0 1 3942300 31653 7915 20136 20147 36446 36446 0.06678199143186703 PRREGGLTDL 10 Unmodified _PRREGGLTDL_ 0 0 0 REV__TACC2|p.V2229Cfs*22|1|0.17|ENSG00000138162|chr10:122211103-122211104|-/C|frameshift_variant REV__TACC2|p.V2229Cfs*22|1|0.17|ENSG00000138162|chr10:122211103-122211104|-/C|frameshift_variant MSMS UPN46_class_I_Rep_3 1 556.8768920898438 2 557.304187 1112.59382 NaN NaN NaN NaN NaN NaN NaN 74.54 1 74.54 74.04 75.04 0 0 0 0 0.53105 1 17295 17295 1.3295 0.63916 1 + 31654 19265 20137 20148 36447 36447 0.04202744732197061 PRRHVKLD 8 Unmodified _PRRHVKLD_ 0 0 0 nc|ENSG00000292373|Q01113-2|IL9R;ENSG00000124334|ENST00000244174|IL9R nc|ENSG00000292373|Q01113-2|IL9R nc|ENSG00000292373|Q01113-2|IL9R MULTI-SECPEP UPN47_class_I_Rep_2 3 510.30352783203125 2 510.8067 1019.59885 0.32141 0.00016418 -2.3005 -0.0011751 -1.9791 -0.0010109 510.8050317606402 110.95 0.12442 114.48 114.42 114.55 3.5271 18 10 3 0 0 0 0.72333 1 27005 27005 2.0598 0.21551 1 318090 31655 2461 20138 20149 36448 36448 0.08983093385461416 PRRKKRLRVL 10 Unmodified _PRRKKRLRVL_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense MSMS UPN48_class_I_Rep_2 6 441.2977294921875 3 441.305357 1320.89424 NaN NaN NaN NaN NaN NaN NaN 81.81 1 85.467 84.967 85.967 3.6567 0 0 0 0.53105 1 19426 19426 0.13989 0.04505 1 + 31656 24147 20139 20150 36449 36449 0.24662921244112113 PRRKKRLRVL 10 Unmodified _PRRKKRLRVL_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense MSMS UPN48_class_I_Rep_2 6 441.29791259765625 3 441.305357 1320.89424 NaN NaN NaN NaN NaN NaN NaN 82.256 1 85.925 85.425 86.425 3.669 0 0 0 0.53105 1 19537 19537 0.13989 0.13989 1 + 31657 24147 20139 20150 36450 36450 0.24662921244112113 PRRKKRLRVL 10 Unmodified _PRRKKRLRVL_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense MSMS UPN48_class_I_Rep_3 7 441.297607421875 3 441.305357 1320.89424 NaN NaN NaN NaN NaN NaN NaN 81.91 1 85.595 85.095 86.095 3.685 0 0 0 0.53105 1 19406 19406 0.13989 0.13989 1 + 31658 24147 20139 20150 36451 36451 0.24662921244112113 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN47_class_I_Rep_2 3 547.3327026367188 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 87.179 1 90.62 90.12 91.12 3.4407 0 0 0 0.40746 1 21672 21672 0.69038 0 1 31659 620 20140 20151 36452 36452 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN47_class_I_Rep_2 3 547.344482421875 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 93.339 1 96.807 96.307 97.307 3.4687 0 0 0 0.40746 1 23037 23037 0.69038 0 1 31660 620 20140 20151 36453 36453 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN47_class_I_Rep_2 3 547.3323364257812 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 94.009 1 97.481 96.981 97.981 3.472 0 0 0 0.40746 1 23185 23185 0.69038 0 1 31661 620 20140 20151 36454 36454 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN47_class_I_Rep_2 3 547.33251953125 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 98.098 1 101.58 101.08 102.08 3.4836 0 0 0 0.40746 1 24060 24060 0.69038 0 1 31662 620 20140 20151 36455 36455 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN47_class_I_Rep_3 4 547.332275390625 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 88.837 1 92.23 91.73 92.73 3.3931 0 0 0 0.40746 1 22282 22282 0.69038 0 1 31663 620 20140 20151 36456 36456 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN47_class_I_Rep_3 4 547.3326416015625 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 98.14 1 101.56 101.06 102.06 3.4216 0 0 0 0.40746 1 24308 24308 0.69038 0 1 31664 620 20140 20151 36457 36457 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN48_class_I_Rep_2 6 547.3322143554688 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 92.878 1 96.648 96.148 97.148 3.77 0 0 0 0.40746 1 22096 22096 0.69038 0 1 31665 620 20140 20151 36458 36458 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN48_class_I_Rep_2 6 547.3326416015625 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 95.647 1 99.427 98.927 99.927 3.7804 0 0 0 0.40746 1 22731 22731 0.69038 0 1 31666 620 20140 20151 36459 36459 0.13144695636560755 PRRKPRQR 8 Unmodified _PRRKPRQR_ 0 0 0 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 chr7:74224760-74228947|34|20.24|0.33|5.94|+|0|LAT2,None|2 MSMS UPN48_class_I_Rep_3 7 547.3453369140625 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 95.523 1 99.431 98.931 99.931 3.9084 0 0 0 0.40625 1 22643 22643 2.3027 0.4585 1 31667 620 20140 20151 36460 36460 0.13144695636560755 PRRKRRKLNP 10 Unmodified _PRRKRRKLNP_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|110|2|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|110|2|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|110|2|sense MSMS UPN46_class_I_Rep_3 1 440.9520263671875 3 440.953094 1319.83745 NaN NaN NaN NaN NaN NaN NaN 71.942 1 71.942 71.442 72.442 0 0 0 0 0.53105 1 16601 16601 0.69767 0.19171 1 31668 11898 20141 20152 36461 36461 0.19032873687592655 PRRLVRKLMC 10 Unmodified _PRRLVRKLMC_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|35|2|sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 636.3801879882812 2 636.381194 1270.74784 NaN NaN NaN NaN NaN NaN NaN 73.403 1 76.94 76.44 77.44 3.5373 0 0 0 0.53105 1 17172 17172 0.45834 0.057624 1 + 31669 25940 20142 20153 36462 36462 0.12329159692353642 PRRNSPGPRWG 11 Unmodified _PRRNSPGPRWG_ 0 0 0 REV__ENST00000337014.10_2_17:80376485-80377700:+|nuORF REV__ENST00000337014.10_2_17:80376485-80377700:+|nuORF MSMS UPN46_class_I_Rep_3 1 640.3447875976562 2 640.341969 1278.66939 NaN NaN NaN NaN NaN NaN NaN 96.562 1 96.562 96.062 97.062 0 0 0 0 0.38417 1 23482 23482 1.0715 0.5467 1 + 31670 21799 20143 20154 36463 36463 0.041197667031156016 PRRNWFWG 8 Unmodified _PRRNWFWG_ 0 0 0 ENST00000608168.1_1_19:16003249-16008861:-|nuORF;ENSG00000186115|ENST00000221700|CYP4F2 ENST00000608168.1_1_19:16003249-16008861:-|nuORF ENST00000608168.1_1_19:16003249-16008861:-|nuORF MSMS UPN48_class_I_Rep_1 5 559.7758178710938 2 559.785767 1117.55698 NaN NaN NaN NaN NaN NaN NaN 35.597 1 39.107 38.607 39.607 3.5101 0 0 0 0.40738 1 5841 5841 0.79363 0 1 31671 5141 20144 20155 36464 36464 0.0029053769694655784 PRRPPTVF 8 Unmodified _PRRPPTVF_ 0 0 0 ENSG00000166987|ENST00000355673|MBD6 ENSG00000166987|ENST00000355673|MBD6 ENSG00000166987|ENST00000355673|MBD6 MSMS UPN48_class_I_Rep_2 6 485.28570556640625 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 41.913 1 45.67 45.17 46.17 3.7579 0 0 0 0.40404 1 7700 7700 5.2307 0 1 31672 4284 20145 20156 36465 36465 0.07004903608185487 PRRPRRGRGVG 11 Unmodified _PRRPRRGRGVG_ 0 0 0 ENST00000335154.9_1_12:50100981-50101167:-|nuORF ENST00000335154.9_1_12:50100981-50101167:-|nuORF ENST00000335154.9_1_12:50100981-50101167:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 421.75103759765625 3 421.925427 1262.75445 -0.26544 -0.000112 -0.17151 -7.2363E-05 -0.43695 -0.00018436 421.92552986066113 25.253 0.23085 25.253 25.043 25.274 0 30 22 2 0 0 0 22.551 1 3381 3381 0.45452 0 1 115590 31673 6200 20146 20157 36466 36466 0.1335855695956525 PRRPRRPRRPG 11 Unmodified _PRRPRRPRRPG_ 0 0 0 ENSG00000116014|ENST00000234371|KISS1R ENSG00000116014|ENST00000234371|KISS1R ENSG00000116014|ENST00000234371|KISS1R MULTI-MSMS UPN46_class_I_Rep_3 1 467.62359619140625 3 467.62386 1399.84975 0.23294 0.00010893 -0.44916 -0.00021004 -0.21622 -0.00010111 467.62356694225144 107.01 0.089676 107.01 106.97 107.06 0 24 11 3 0 0 0 0.65674 1 26104 26104 2.6312 0 1 1344100 31674 2155 20147 20158 36467 36467 0.16581910150625845 PRRQLPKAQ 9 Unmodified _PRRQLPKAQ_ 0 0 0 REV__nc|ENSG00000109794|A5PLN7-2|FAM149A REV__nc|ENSG00000109794|A5PLN7-2|FAM149A MSMS UPN47_class_I_Rep_1 2 547.3320922851562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 90.324 1 94.014 93.514 94.514 3.6899 0 0 0 0.4007 1 22571 22571 0.52476 0 1 + 31675 18413 20148 20159 36468 36468 0.10899051448268438 PRRRAAESLLA 11 Unmodified _PRRRAAESLLA_ 0 0 0 REV__THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|36|3|sense REV__THE1B-int_dup1495|chr5:34060848-34062179:-|1.8419662019527083|0.3474719775923112|2.41|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 620.8709106445312 2 620.367653 1238.72075 0.54821 0.00034009 1.4071 0.00087291 1.9553 0.001213 620.8704920965708 108.64 0.039337 112.28 112.26 112.3 3.6355 6 4 2 0 0 0 0.65271 1 26711 26711 2.9952 0.49676 1 2245700 + 31676 32243 20149 20160 36469 36469 0.11094090677170243 PRRRLSQRPRH 11 Unmodified _PRRRLSQRPRH_ 0 0 0 REV__ENSG00000186207|ENST00000334269|LCE5A REV__ENSG00000186207|ENST00000334269|LCE5A MULTI-MSMS UPN48_class_I_Rep_3 7 486.958984375 3 486.95902 1457.85523 0.23652 0.00011518 0.51134 0.000249 0.74786 0.00036418 486.9589376895832 94.896 0.13684 98.797 98.736 98.873 3.9016 30 17 3 0 0 0 0.68024 1 22484 22484 0.50596 0.051438 1 150930 + 31677 20882 20150 20161 36470 36470 0.1446158894243581 PRRRLSQRPRH 11 Unmodified _PRRRLSQRPRH_ 0 0 0 REV__ENSG00000186207|ENST00000334269|LCE5A REV__ENSG00000186207|ENST00000334269|LCE5A MULTI-MATCH UPN46_class_I_Rep_3 1 3 486.95902 1457.85523 0.28562 0.00013909 -0.13694 -6.6685E-05 0.14868 7.2403E-05 486.9589871275524 98.569 0.044777 98.569 98.547 98.591 0 -0.1623 -0.00020346 NaN 0.50596 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 222930 + 31678 20882 20150 20161 0.1446158894243581 PRRRLSQRPRH 11 Unmodified _PRRRLSQRPRH_ 0 0 0 REV__ENSG00000186207|ENST00000334269|LCE5A REV__ENSG00000186207|ENST00000334269|LCE5A MULTI-MATCH UPN47_class_I_Rep_2 3 3 486.95902 1457.85523 0.44036 0.00021444 -0.57209 -0.00027858 -0.13173 -6.4149E-05 486.95865849008396 95.353 0.068283 98.828 98.77 98.838 3.4753 0.096469 -0.00083916 NaN 0.50596 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 52583 + 31679 20882 20150 20161 0.1446158894243581 PRRRLSQRPRH 11 Unmodified _PRRRLSQRPRH_ 0 0 0 REV__ENSG00000186207|ENST00000334269|LCE5A REV__ENSG00000186207|ENST00000334269|LCE5A MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 486.95902 1457.85523 0.23652 0.00011518 0.51134 0.000249 0.74786 0.00036418 486.9589376895832 94.896 0.13684 98.797 98.736 98.873 3.9016 0.065826 0.00074359 NaN 0.50596 30 17 3 NaN NaN NaN NaN 0 NaN NaN 0 150930 + 31680 20882 20150 20161 0.1446158894243581 PRRRPHRQR 9 Unmodified _PRRRPHRQR_ 0 0 0 ENST00000361762.3_2_4:30722797-30723229:+|nuORF ENST00000361762.3_2_4:30722797-30723229:+|nuORF ENST00000361762.3_2_4:30722797-30723229:+|nuORF MSMS UPN48_class_I_Rep_1 5 629.8790893554688 2 629.876845 1257.73914 NaN NaN NaN NaN NaN NaN NaN 57.679 1 61.173 60.673 61.673 3.4942 0 0 0 0.4007 1 12517 12517 0.52476 0 1 31681 6333 20151 20162 36471 36471 0.12057690162373547 PRRRPYPLL 9 Unmodified _PRRRPYPLL_ 0 0 0 REV__nc|ENSG00000133858|O60293-4|ZFC3H1 REV__nc|ENSG00000133858|O60293-4|ZFC3H1 MSMS UPN46_class_I_Rep_3 1 584.3609008789062 2 584.359099 1166.70365 NaN NaN NaN NaN NaN NaN NaN 93.394 1 93.394 92.894 93.894 0 0 0 0 0.4007 1 22633 22633 0.52476 0 1 + 31682 19073 20152 20163 36472 36472 0.1269621486203505 PRRRRERSRAV 11 Unmodified _PRRRRERSRAV_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|118|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|118|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|118|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 480.95501708984375 3 480.290658 1437.85014 -0.21985 -0.00010559 1.6809 0.00080734 1.4611 0.00070174 480.62563184631796 15.277 0.095399 18.664 18.636 18.731 3.3864 13 10 2 0 0 0 22.551 1 789 789 1.2148 0.76031 1 16389 31683 15544 20153 20164 36473 36473 0.1487328507980692 PRRRWWWLQRR 11 Unmodified _PRRRWWWLQRR_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS UPN46_class_I_Rep_3 1 565.7743530273438 3 565.990431 1694.94946 NaN NaN NaN NaN NaN NaN NaN 93.079 1 93.079 92.579 93.579 0 0 0 0 0.38417 1 22548 22548 0 0 1 31684 7619 20154 20165 36474 36474 0.12978727764561881 PRRTVKSRK 9 Unmodified _PRRTVKSRK_ 0 0 0 REV__nc|ENSG00000152291|O43493-6|TGOLN2 REV__nc|ENSG00000152291|O43493-6|TGOLN2 MSMS UPN48_class_I_Rep_1 5 564.360595703125 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 74.631 1 78.121 77.621 78.621 3.49 0 0 0 0.40098 1 17642 17642 0.45834 0 1 + 31685 19677 20155 20166 36475 36475 0.14642429230957532 PRRWHSRH 8 Unmodified _PRRWHSRH_ 0 0 0 ENST00000559466.1_1_21:9912100-9912397:-|nuORF ENST00000559466.1_1_21:9912100-9912397:-|nuORF ENST00000559466.1_1_21:9912100-9912397:-|nuORF MSMS UPN47_class_I_Rep_3 4 566.2847900390625 2 566.30519 1130.59583 NaN NaN NaN NaN NaN NaN NaN 25.998 1 29.345 28.845 29.845 3.3478 0 0 0 0.40753 1 3739 3739 0.6015 0 1 31686 7449 20156 20167 36476 36476 0.035752630513115946 PRSLAAKLH 9 Unmodified _PRSLAAKLH_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS UPN46_class_I_Rep_3 1 496.80377197265625 2 496.803626 991.592698 0.30731 0.00015267 -1.6379 -0.00081373 -1.3306 -0.00066106 496.80266451206745 107.99 0.56571 107.99 107.9 108.47 0 91 54 3 0 0 0 0.36392 1 26343 26343 10.074 0.72649 1 122390000 + 31687 19481 20157 20168 36477 36477 0.0965657515392877 PRSRRRYVRGR 11 Unmodified _PRSRRRYVRGR_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.9591064453125 3 486.95902 1457.85523 0.21886 0.00010658 0.054224 2.6405E-05 0.27308 0.00013298 486.9589322571103 94.74 0.29144 98.147 97.993 98.285 3.4068 49 39 2 0 0 0 0.68478 1 23570 23570 0.094841 0 1 100500 31688 4268 20158 20169 36478 36478 0.14461588942413073 PRSVGQPSRR 10 Unmodified _PRSVGQPSRR_ 0 0 0 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 ENSG00000188869|ENST00000359440|TMC3 MULTI-MSMS UPN47_class_I_Rep_3 4 570.3232421875 2 570.323245 1138.63194 -0.44109 -0.00025157 0.2515 0.00014344 -0.18959 -0.00010813 570.3231667132713 12.98 0.19986 16.354 16.271 16.47 3.3734 49 22 3 0 0 0 0.56374 1 224 224 1.1933 1.1933 1 87730 31689 5260 20159 20170 36479 36479 0.06816675437517006 PRTAKGGR 8 Unmodified _PRTAKGGR_ 0 0 0 nc|ENSG00000137709|Q9UKI9-2|POU2F3 nc|ENSG00000137709|Q9UKI9-2|POU2F3 nc|ENSG00000137709|Q9UKI9-2|POU2F3 MULTI-MSMS UPN48_class_I_Rep_1 5 421.7509765625 2 421.751393 841.488233 -0.091422 -3.8557E-05 -0.23151 -9.7641E-05 -0.32294 -0.0001362 421.751170912148 79.608 0.5784 83.156 82.788 83.367 3.5487 100 65 2 0 0 0 0.82752 1 19057 19057 2.5775 0.27475 1 148620 31690 16691 20160 20171 36480 36480 0.06114873397245901 PRTCGLSLF 9 Unmodified _PRTCGLSLF_ 0 0 0 ENST00000352681.7_2_16:727083-728243:+|nuORF ENST00000352681.7_2_16:727083-728243:+|nuORF ENST00000352681.7_2_16:727083-728243:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.2729797363281 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 56.465 1 59.966 59.466 60.466 3.5014 0 0 0 0.17222 1 12152 12152 18.146 0 1 31691 6272 20161 20172 36481 36481 0.014781313996877543 PRTLALRERL 10 Unmodified _PRTLALRERL_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MULTI-MSMS UPN46_class_I_Rep_3 1 408.9223937988281 3 408.922689 1223.74624 0.066238 2.7086E-05 -0.70575 -0.0002886 -0.63951 -0.00026151 408.92232311635115 101.09 0.075623 101.09 101.04 101.12 0 15 6 4 0 0 0 0.56296 1 24665 24665 1.7423 0 1 852890 31692 2911 20162 20173 36482 36482 0.14331565199586294 PRTLALRERL 10 Unmodified _PRTLALRERL_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MSMS UPN47_class_I_Rep_1 2 408.9226989746094 3 408.922689 1223.74624 NaN NaN NaN NaN NaN NaN NaN 96.787 1 100.56 100.06 101.06 3.7767 0 0 0 0.53105 1 23995 23995 5.4027 0 1 31693 2911 20162 20173 36483 36483 0.14331565199586294 PRTLALRERL 10 Unmodified _PRTLALRERL_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MULTI-MATCH UPN48_class_I_Rep_1 5 3 408.922689 1223.74624 -0.14471 -5.9176E-05 -0.83059 -0.00033965 -0.9753 -0.00039882 409.25687786287136 97.62 0.10255 101.23 101.19 101.29 3.6088 0.037772 0.00021927 NaN 1.7423 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 89240 31694 2911 20162 20173 0.14331565199586294 PRTLALRERL 10 Unmodified _PRTLALRERL_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MULTI-MATCH UPN48_class_I_Rep_3 7 3 408.922689 1223.74624 0.096568 3.9489E-05 -1.1826 -0.00048358 -1.086 -0.00044409 408.922156527916 97.345 0.087967 101.25 101.23 101.31 3.9084 0.061564 -0.00021255 NaN 1.7423 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 417640 31695 2911 20162 20173 0.14331565199586294 PRTLLQVSWF 10 Unmodified _PRTLLQVSWF_ 0 0 0 ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF ENST00000537971.5_1_12:3395045-3395321:+|nuORF MSMS UPN48_class_I_Rep_3 7 416.2351989746094 3 416.236274 1245.68699 NaN NaN NaN NaN NaN NaN NaN 103.49 1 107.24 106.74 107.74 3.7434 0 0 0 0.53105 1 24443 24443 1.7423 0 1 31696 7340 20163 20174 36484 36484 0.0739766918541136 PRVAPLSPVL 10 Unmodified _PRVAPLSPVL_ 0 0 0 REV__LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|81|3|anti-sense REV__LTR37-int_dup964|chr13:51746242-51747544:-|2.701168556610177|0.1137803729871106|4.57|151.0|81|3|anti-sense MSMS UPN46_class_I_Rep_3 1 524.8274536132812 2 524.829309 1047.64407 NaN NaN NaN NaN NaN NaN NaN 93.989 1 93.989 93.489 94.489 0 0 0 0 0.53105 1 22794 22794 14.838 2.5976 1 + 31697 30909 20164 20175 36485 36485 0.12214899127980061 PRVAWLLKH 9 Unmodified _PRVAWLLKH_ 0 0 0 REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.3405151367188 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 95.487 1 98.962 98.462 99.462 3.4753 0 0 0 0.39518 1 23499 23499 1.8442 0.51471 1 + 31698 29019 20165 20176 36486 36486 0.11669427459037252 PRVAWLLKH 9 Unmodified _PRVAWLLKH_ 0 0 0 REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense MSMS UPN47_class_I_Rep_3 4 560.3408813476562 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 94.633 1 98.04 97.54 98.54 3.4068 0 0 0 0.39518 1 23547 23547 1.8442 1.1539 1 + 31699 29019 20165 20176 36487 36487 0.11669427459037252 PRVAWLLKH 9 Unmodified _PRVAWLLKH_ 0 0 0 REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.3419189453125 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 95.479 1 99.095 98.595 99.595 3.6167 0 0 0 0.39518 1 22997 22997 1.8442 0.19162 1 + 31700 29019 20165 20176 36488 36488 0.11669427459037252 PRVAWLLKH 9 Unmodified _PRVAWLLKH_ 0 0 0 REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense REV__L1PA11_dup2879|chr11:2321828-2323994:+|6.956114896003248|0.1593095337521871|5.45|151.0|105|2|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3406982421875 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 98.191 1 102.09 101.59 102.59 3.9022 0 0 0 0.39518 1 23268 23268 1.8442 0.36234 1 + 31701 29019 20165 20176 36489 36489 0.11669427459037252 PRVHVIRKD 9 Unmodified _PRVHVIRKD_ 0 0 0 ENST00000606521.1_1_6:85452265-85472428:-|nuORF;nc|ENSG00000092607|Q96SF7-2|TBX15;ENSG00000092607|ENST00000369429|TBX15;ENSG00000112837|ENST00000369663|TBX18 ENST00000606521.1_1_6:85452265-85472428:-|nuORF ENST00000606521.1_1_6:85452265-85472428:-|nuORF MSMS UPN48_class_I_Rep_3 7 560.3403930664062 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 95.172 1 99.074 98.574 99.574 3.9016 0 0 0 0.3967 1 22558 22558 1.4819 0.28856 1 31702 1395 20166 20177 36490 36490 0.11267337965318802 PRVLLTLLY 9 Unmodified _PRVLLTLLY_ 0 0 0 ENST00000314888.9_1_9:35697397-35697580:-|nuORF ENST00000314888.9_1_9:35697397-35697580:-|nuORF ENST00000314888.9_1_9:35697397-35697580:-|nuORF MSMS UPN48_class_I_Rep_3 7 544.3487548828125 2 544.347335 1086.68012 NaN NaN NaN NaN NaN NaN NaN 74.891 1 78.457 77.957 78.957 3.5659 0 0 0 0.37692 1 17563 17563 6.2058 0 1 31703 6129 20167 20178 36491 36491 0.1402435630486707 PRVLQVVRF 9 Unmodified _PRVLQVVRF_ 0 0 0 L1MEc_dup4459|chr4:2592423-2593132:+|1.1201663718762165|0.0114695621764393|6.61|151.0|36|3|anti-sense L1MEc_dup4459|chr4:2592423-2593132:+|1.1201663718762165|0.0114695621764393|6.61|151.0|36|3|anti-sense L1MEc_dup4459|chr4:2592423-2593132:+|1.1201663718762165|0.0114695621764393|6.61|151.0|36|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 557.3478393554688 2 557.3482 1112.68185 0.42684 0.0002379 0.62554 0.00034864 1.0524 0.00058654 557.3484078429581 108.96 0.58058 108.96 108.88 109.46 0 109 39 4 0 0 0 0.33654 1 26774 26774 11.64 3.7301 1 44819000 31704 13110 20168 20179 36492 36492 0.13001410113474776 PRVPGPFLPAL 11 Unmodified _PRVPGPFLPAL_ 0 0 0 REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF MSMS UPN48_class_I_Rep_1 5 582.3522338867188 2 582.350409 1162.68626 NaN NaN NaN NaN NaN NaN NaN 101.36 1 104.97 104.47 105.47 3.612 0 0 0 0.38417 1 24469 24469 1.4819 0.8804 1 + 31705 21500 20169 20180 36493 36493 0.11142874536380987 PRVPHRAL 8 Unmodified _PRVPHRAL_ 0 0 0 REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF MSMS UPN48_class_I_Rep_1 5 473.2894287109375 2 473.290685 944.566818 NaN NaN NaN NaN NaN NaN NaN 63.996 1 67.454 66.954 67.954 3.4578 0 0 0 0.40404 1 14452 14452 5.2307 0 1 + 31706 22396 20170 20181 36494 36494 0.09231725702306903 PRVPLPRRE 9 Unmodified _PRVPLPRRE_ 0 0 0 nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS MSMS UPN48_class_I_Rep_2 6 560.3399658203125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 95.218 1 98.999 98.499 99.499 3.7804 0 0 0 0.3967 1 22635 22635 1.4819 0.51963 1 31707 3719 20171 20182 36495 36495 0.11267337965318802 PRVPPGPL 8 Unmodified _PRVPPGPL_ 0 0 0 REV__ENST00000360578.6_1_5:664230-664467:-|nuORF REV__ENST00000360578.6_1_5:664230-664467:-|nuORF MSMS UPN48_class_I_Rep_1 5 416.75634765625 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.3 1 112.93 112.43 113.43 3.6321 0 0 0 0.40604 1 26536 26536 2.5775 0 1 + 31708 21897 20172 20183 36496 36496 0.07418427313859866 PRVPPGPL 8 Unmodified _PRVPPGPL_ 0 0 0 REV__ENST00000360578.6_1_5:664230-664467:-|nuORF REV__ENST00000360578.6_1_5:664230-664467:-|nuORF MSMS UPN48_class_I_Rep_1 5 416.7563781738281 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.32 1 112.95 112.45 113.45 3.6321 0 0 0 0.40604 1 26541 26541 2.5775 0 1 + 31709 21897 20172 20183 36497 36497 0.07418427313859866 PRVPPGPL 8 Unmodified _PRVPPGPL_ 0 0 0 REV__ENST00000360578.6_1_5:664230-664467:-|nuORF REV__ENST00000360578.6_1_5:664230-664467:-|nuORF MSMS UPN48_class_I_Rep_1 5 416.75628662109375 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.45 1 113.09 112.59 113.59 3.6321 0 0 0 0.40604 1 26582 26582 2.5775 0 1 + 31710 21897 20172 20183 36498 36498 0.07418427313859866 PRVQHGLR 8 Unmodified _PRVQHGLR_ 0 0 0 ENST00000397299.8_1_15:42129277-42129514:+|nuORF ENST00000397299.8_1_15:42129277-42129514:+|nuORF ENST00000397299.8_1_15:42129277-42129514:+|nuORF MSMS UPN48_class_I_Rep_1 5 481.7857666015625 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 114.4 1 118.03 117.53 118.53 3.6301 0 0 0 0.40746 1 27811 27811 0.69038 0 1 31711 6572 20173 20184 36499 36499 0.07466537696950581 PRVQKQHV 8 Unmodified _PRVQKQHV_ 0 0 0 REV__L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|4|1|sense REV__L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 496.2933654785156 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 95.364 1 98.981 98.481 99.481 3.6167 0 0 0 0.40604 1 22965 22965 2.5775 0.27475 1 + 31712 28600 20174 20185 36500 36500 0.0766340449413292 PRVQYQIR 8 Unmodified _PRVQYQIR_ 0 0 0 AluSx_dup35818|chr6:15292672-15292971:-|1.2068054426586712|0.0041709026658861|8.18|150.0|6|2|sense AluSx_dup35818|chr6:15292672-15292971:-|1.2068054426586712|0.0041709026658861|8.18|150.0|6|2|sense AluSx_dup35818|chr6:15292672-15292971:-|1.2068054426586712|0.0041709026658861|8.18|150.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 530.305908203125 2 530.306532 1058.59851 NaN NaN NaN NaN NaN NaN NaN 29.58 1 33.308 32.808 33.808 3.7286 0 0 0 0.40625 1 4165 4165 2.3027 0 1 31713 280 20175 20186 36501 36501 0.0715567366560208 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.6343994140625 3 510.634313 1528.88111 0.35776 0.00018268 -0.28408 -0.00014506 0.073679 3.7623E-05 510.6340937647705 97.956 0.34886 101.74 101.65 102 3.7861 82 48 3 0 0 0 0.68478 1 24294 24294 0.094841 0.094841 1 141330 31714 15558 20176 20187 36502 36502 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.9686584472656 3 510.634313 1528.88111 0.22843 0.00011664 0.057579 2.9402E-05 0.286 0.00014604 510.6341556483084 97.13 0.65431 100.74 100.29 100.95 3.6088 196 78 4 0 0 0 0.68478 1 23437 23437 0.094841 0 1 478670 31715 15558 20176 20187 36503 36503 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.9689025878906 3 510.634313 1528.88111 0.22828 0.00011657 0.13168 6.7243E-05 0.35997 0.00018381 510.63413777519753 97.416 1.0962 101.02 100.75 101.84 3.6088 307 136 3 0 0 0 0.68024 1 23529 23529 0.50596 0.09769 1 497550 31716 15558 20176 20187 36504 36504 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.63433837890625 3 510.634313 1528.88111 0.31976 0.00016328 -0.023058 -1.1774E-05 0.2967 0.00015151 510.63423573573635 96.061 0.23788 99.841 99.725 99.963 3.7804 44 33 2 0 0 0 0.68478 1 22835 22835 0.094841 0 1 137740 31717 15558 20176 20187 36505 36505 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.63427734375 3 510.634313 1528.88111 0.31975 0.00016327 -0.35931 -0.00018348 -0.03956 -2.0201E-05 510.634052450626 97.032 0.64236 100.81 100.23 100.87 3.7804 116 82 2 0 0 0 0.68478 1 22939 22939 0.094841 0.011491 1 566480 31718 15558 20176 20187 36506 36506 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.63433837890625 3 510.634313 1528.88111 0.31979 0.0001633 -0.263 -0.00013429 0.056796 2.9002E-05 510.9685056883177 97.145 0.87234 100.92 100.83 101.7 3.779 185 121 2 0 0 0 0.68024 2 23147 23093;23147 0.50596 0.31342 1 453300 31719 15558 20176 20187 36507;36508 36508 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.6344909667969 3 510.634313 1528.88111 0.31973 0.00016327 -0.12264 -6.2623E-05 0.1971 0.00010064 510.63411064803427 107.26 0.2686 110.94 110.72 110.99 3.6783 51 31 2 0 0 0 0.68478 1 25341 25341 0.094841 0 1 1188500 31720 15558 20176 20187 36509 36509 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 510.9687194824219 3 510.634313 1528.88111 NaN NaN NaN NaN NaN NaN NaN 98.156 1 101.93 101.43 102.43 3.7707 0 0 0 0.38417 1 23319 23319 0.094841 0 1 31721 15558 20176 20187 36510 36510 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.6343994140625 3 510.634313 1528.88111 0.28696 0.00014653 0.009909 5.0599E-06 0.29687 0.00015159 510.9686753421391 96.118 0.28875 100.03 99.953 100.24 3.9084 48 40 2 0 0 0 0.68478 1 22775 22775 0.094841 0 1 119110 31722 15558 20176 20187 36511 36511 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.6344909667969 3 510.634313 1528.88111 0.28783 0.00014698 -0.059633 -3.0451E-05 0.2282 0.00011652 510.63407466059454 97.241 1.2279 101.15 100.39 101.61 3.9084 362 166 3 0 0 0 0.68024 3 23099 23042;23065;23099 0.50596 0.051438 1 543670 31723 15558 20176 20187 36512;36513;36514 36514 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 510.63446044921875 3 510.634313 1528.88111 0.2882 0.00014717 -0.053426 -2.7281E-05 0.23478 0.00011989 510.63418338303467 95.22 0.35698 99.122 98.893 99.25 3.9016 60 46 2 0 0 0 22.551 1 22531 22531 0.094841 0 1 193260 31724 15558 20176 20187 36515 36515 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 510.634313 1528.88111 0.32359 0.00016524 -0.35403 -0.00018078 -0.030444 -1.5546E-05 510.6340626391048 98.18 0.20071 101.66 101.58 101.78 3.4836 -0.022987 -0.00016449 NaN 0.094841 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 93445 31725 15558 20176 20187 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 510.634313 1528.88111 0.32388 0.00016538 -0.27802 -0.00014197 0.045858 2.3416E-05 510.63413201884913 107.33 0.091995 110.86 110.8 110.89 3.5345 -0.049976 -0.00021757 NaN 0.094841 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 651560 31726 15558 20176 20187 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 510.634313 1528.88111 0.22802 0.00011643 -0.060289 -3.0786E-05 0.16773 8.5648E-05 510.96862202188345 107.27 0.2825 110.9 110.67 110.95 3.6299 -0.0078633 0.00011597 NaN 0.094841 58 30 3 NaN NaN NaN NaN 0 NaN NaN 0 1790100 31727 15558 20176 20187 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 510.634313 1528.88111 0.31973 0.00016327 -0.12264 -6.2623E-05 0.1971 0.00010064 510.63411064803427 107.26 0.2686 110.94 110.72 110.99 3.6783 0.023802 2.0461E-05 NaN 0.094841 51 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1188500 31728 15558 20176 20187 0.13782438394059682 PRVRRREYRNK 11 Unmodified _PRVRRREYRNK_ 0 0 0 LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense LTR13_dup157|chr7:152319152-152320137:+|1.1347969073833803|0.0487203776168196|4.54|151.0|31|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 510.634313 1528.88111 0.28637 0.00014623 -0.50798 -0.00025939 -0.22161 -0.00011316 510.63399966406206 107.26 0.26726 110.95 110.74 111.01 3.6867 0.034037 -0.00056984 NaN 0.094841 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 892520 31729 15558 20176 20187 0.13782438394059682 PRVTMILL 8 Unmodified _PRVTMILL_ 0 0 0 REV__L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense REV__L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7958679199219 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 84.357 1 87.78 87.28 88.28 3.4232 0 0 0 0.40364 1 21037 21037 5.7604 2.8712 1 + 31730 28478 20177 20188 36516 36516 0.10008482818830089 PRVTMILL 8 Unmodified _PRVTMILL_ 0 0 0 REV__L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense REV__L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 85.632 1 89.004 88.504 89.504 3.3716 0 0 0 0.40604 1 21452 21452 2.5775 0.51773 1 + 31731 28478 20177 20188 36517 36517 0.10008482818830089 PRVWVCVC 8 Unmodified _PRVWVCVC_ 0 0 0 L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|130|2|anti-sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|130|2|anti-sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|130|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 480.8130187988281 2 481.240958 960.467363 -0.20883 -0.0001005 -1.2429 -0.00059815 -1.4518 -0.00069865 481.24054033496293 14.213 0.17758 17.601 17.513 17.69 3.3871 28 20 2 0 0 0 0.72333 1 517 517 0.79363 0.79363 1 19266 31732 14179 20178 20189 36518 36518 -0.014451762983071603 PRVYPVPA 8 Unmodified _PRVYPVPA_ 0 0 0 REV__nc|ENSG00000095002|P43246-2|MSH2 REV__nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS UPN47_class_I_Rep_1 2 449.76007080078125 2 449.760895 897.507237 0.17973 8.0834E-05 -1.3916 -0.00062588 -1.2119 -0.00054505 449.76013214195183 109 0.20425 112.6 112.55 112.75 3.6046 20 12 3 0 0 0 0.82752 1 26880 26880 2.5775 0 1 5158400 + 31733 18047 20179 20190 36519 36519 0.05438409968269298 PRVYPVPA 8 Unmodified _PRVYPVPA_ 0 0 0 REV__nc|ENSG00000095002|P43246-2|MSH2 REV__nc|ENSG00000095002|P43246-2|MSH2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 449.760895 897.507237 0.02726 1.2261E-05 -0.57336 -0.00025787 -0.5461 -0.00024561 449.7602705828116 109.32 0.13972 112.85 112.75 112.89 3.5307 -0.0018059 0.00044987 NaN 2.5775 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1103200 + 31734 18047 20179 20190 0.05438409968269298 PRVYPVPA 8 Unmodified _PRVYPVPA_ 0 0 0 REV__nc|ENSG00000095002|P43246-2|MSH2 REV__nc|ENSG00000095002|P43246-2|MSH2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 449.760895 897.507237 0.0031411 1.4127E-06 -1.0917 -0.000491 -1.0885 -0.00048958 449.7602981842162 109.46 0.080856 113.1 113.03 113.11 3.6321 0.24623 -1.6376E-05 NaN 2.5775 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 257790 + 31735 18047 20179 20190 0.05438409968269298 PRWGRHRR 8 Unmodified _PRWGRHRR_ 0 0 0 L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|113|3|anti-sense L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|113|3|anti-sense L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|113|3|anti-sense MSMS UPN48_class_I_Rep_2 6 560.8211059570312 2 560.821007 1119.62746 NaN NaN NaN NaN NaN NaN NaN 23.16 1 26.803 26.303 27.303 3.6432 0 0 0 0.40746 1 2478 2478 0.69038 0 1 31736 14918 20180 20191 36520 36520 0.07243255805269655 PRWHDDWRPR 10 Unmodified _PRWHDDWRPR_ 0 0 0 REV__AluSz6_dup21808|chr8:100716130-100716414:+|1.1439996989374126|0.1036341388648459|3.46|151.0|8|3|sense REV__AluSz6_dup21808|chr8:100716130-100716414:+|1.1439996989374126|0.1036341388648459|3.46|151.0|8|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.2825012207031 3 474.23756 1419.69085 0.036347 1.7237E-05 0.24991 0.00011852 0.28625 0.00013575 474.5724568092109 32.099 0.054703 32.099 32.053 32.108 0 5 3 2 0 0 0 0.84575 1 5440 5440 0.62683 0 1 45809 + 31737 17227 20181 20192 36521 36521 -0.002208482681908208 PRWKRLHFV 9 Unmodified _PRWKRLHFV_ 0 0 0 REV__ENSG00000073849.16,ST6GAL1,chr3,+,I6.1,186964365,186974956|50|12.01|1|intron REV__ENSG00000073849.16,ST6GAL1,chr3,+,I6.1,186964365,186974956|50|12.01|1|intron MSMS UPN46_class_I_Rep_3 1 619.8699951171875 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 92.114 1 92.114 91.614 92.614 0 0 0 0 0.39428 1 22278 22278 2.0598 0.21551 1 + 31738 17842 20182 20193 36522 36522 0.11027921098911975 PRWKRLHFV 9 Unmodified _PRWKRLHFV_ 0 0 0 REV__ENSG00000073849.16,ST6GAL1,chr3,+,I6.1,186964365,186974956|50|12.01|1|intron REV__ENSG00000073849.16,ST6GAL1,chr3,+,I6.1,186964365,186974956|50|12.01|1|intron MSMS UPN47_class_I_Rep_1 2 619.8688354492188 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 86.848 1 90.485 89.985 90.985 3.6372 0 0 0 0.39428 1 21696 21696 2.0598 0.40713 1 + 31739 17842 20182 20193 36523 36523 0.11027921098911975 PRWKRLHFV 9 Unmodified _PRWKRLHFV_ 0 0 0 REV__ENSG00000073849.16,ST6GAL1,chr3,+,I6.1,186964365,186974956|50|12.01|1|intron REV__ENSG00000073849.16,ST6GAL1,chr3,+,I6.1,186964365,186974956|50|12.01|1|intron MSMS UPN48_class_I_Rep_2 6 619.8694458007812 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 86.568 1 90.285 89.785 90.785 3.7171 0 0 0 0.39428 1 20610 20610 2.0598 0.40713 1 + 31740 17842 20182 20193 36524 36524 0.11027921098911975 PRWLGYSLAL 10 Unmodified _PRWLGYSLAL_ 0 0 0 MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|42|2|anti-sense MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|42|2|anti-sense MER4D0_dup140|chr6:4915382-4916254:+|1.1323013278731942|0.0416904081837379|4.76|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_2 6 588.3296508789062 2 588.332216 1174.64988 NaN NaN NaN NaN NaN NaN NaN 78.511 1 82.133 81.633 82.633 3.6222 0 0 0 0.53105 1 18624 18624 1.4819 0.79152 1 31741 16034 20183 20194 36525 36525 0.06953997639675435 PRWPRERRRRR 11 Unmodified _PRWPRERRRRR_ 0 0 0 REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 405.9327087402344 4 405.99372 1619.94578 0.0021743 8.8274E-07 -1.868 -0.0007584 -1.8658 -0.00075752 406.243209812649 35.629 0.057873 39.295 39.253 39.311 3.6668 6 4 2 0 0 0 22.551 1 5790 5790 0.073264 0.073264 1 18343 + 31742 21619 20184 20195 36526 36526 0.16060057990694077 PRWRRRRRPWQ 11 Unmodified _PRWRRRRRPWQ_ 0 0 0 ENST00000535818.1_1_11:60906157-60928919:-|nuORF;ENST00000536000.1_1_11:60900588-60928919:-|nuORF ENST00000535818.1_1_11:60906157-60928919:-|nuORF ENST00000535818.1_1_11:60906157-60928919:-|nuORF MSMS UPN46_class_I_Rep_3 1 550.79833984375 3 550.65393 1648.93996 NaN NaN NaN NaN NaN NaN NaN 47.521 1 47.521 47.021 48.021 0 0 0 0 0.38417 1 9833 9833 0.08335 0.08335 1 31743 7329 20185 20196 36527 36527 0.1414495947906289 PRWRSWLL 8 Unmodified _PRWRSWLL_ 0 0 0 ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS UPN47_class_I_Rep_3 4 557.8202514648438 2 557.319443 1112.62433 0.43291 0.00024127 -1.299 -0.00072395 -0.86608 -0.00048268 557.3186242004685 65.448 0.28648 68.627 68.436 68.722 3.1795 38 22 2 0 0 0 0.82752 1 15726 15726 7.2892 0 1 84269 31744 2273 20186 20197 36528 36528 0.07252567907880803 PRYARLTR 8 Unmodified _PRYARLTR_ 0 0 0 L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|32|2|sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|32|2|sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|32|2|sense MSMS UPN46_class_I_Rep_3 1 516.8056030273438 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 97.173 1 97.173 96.673 97.673 0 0 0 0 0.40746 1 23638 23638 0.69038 0 1 31745 11208 20187 20198 36529 36529 0.08431093385433996 PRYDWCLIH 9 Unmodified _PRYDWCLIH_ 0 0 0 REV__AluJr_dup8742|chr2:61505010-61505292:-|1.1692368316567638|0.0594931898716008|4.3|151.0|21|2|anti-sense REV__AluJr_dup8742|chr2:61505010-61505292:-|1.1692368316567638|0.0594931898716008|4.3|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 601.791748046875 2 601.792401 1201.57025 NaN NaN NaN NaN NaN NaN NaN 40.037 1 43.542 43.042 44.042 3.5048 0 0 0 0.40038 1 7138 7138 0.6015 0 1 + 31746 17066 20188 20199 36530 36530 -0.02247392305980611 PRYIRCWY 8 Unmodified _PRYIRCWY_ 0 0 0 REV__nc|ENSG00000096264|O95944-3|NCR2 REV__nc|ENSG00000096264|O95944-3|NCR2 MULTI-SECPEP UPN48_class_I_Rep_2 6 578.2882690429688 2 578.789661 1155.56477 0.4752 0.00027504 0.17625 0.00010201 0.65145 0.00037705 579.2918121387979 81.483 0.15137 85.139 85.072 85.223 3.6567 22 18 2 0 0 0 0.72333 1 19327 19327 0.69038 0 1 161550 + 31747 31948 20189 20200 36531 36531 -0.006790710978066272 PRYIVKPLIA 10 Unmodified _PRYIVKPLIA_ 0 0 0 REV__L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|99|2|sense REV__L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|99|2|sense MSMS UPN48_class_I_Rep_2 6 585.3748168945312 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 34.299 1 37.959 37.459 38.459 3.6607 0 0 0 0.53105 1 5511 5511 0.40072 0 1 + 31748 29859 20190 20201 36532 36532 0.15559734087514698 PRYMHWKI 8 Unmodified _PRYMHWKI_ 0 0 0 REV__Tigger4_dup1103|chr12:95051139-95051551:+|1.0262198784237309|0.3343186282058945|1.62|151.0|4|1|sense REV__Tigger4_dup1103|chr12:95051139-95051551:+|1.0262198784237309|0.3343186282058945|1.62|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 566.2320556640625 2 565.800029 1129.5855 NaN NaN NaN NaN NaN NaN NaN 113.13 1 116.64 116.14 117.14 3.5098 0 0 0 0.40746 1 27743 27743 0.69038 0 1 + 31749 32773 20191 20202 36533 36533 0.02589519281855246 PRYWGHPTY 9 Unmodified _PRYWGHPTY_ 0 0 0 REV__MER54A_dup630|chr19:11895206-11895760:-|2.1094898012235226|0.1505260151762002|3.81|151.0|3|1|sense REV__MER54A_dup630|chr19:11895206-11895760:-|2.1094898012235226|0.1505260151762002|3.81|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.3159790039062 2 588.78289 1175.55123 0.43822 0.00025802 -1.6441 -0.00096803 -1.2059 -0.00071001 588.7819019630373 39.45 0.17092 42.955 42.882 43.053 3.5048 21 15 2 0 0 0 0.42249 1 6954 6954 6.7232 0.51738 1 53357 + 31750 31438 20192 20203 36534 36534 -0.029526056053782668 PRYWGHPTY 9 Unmodified _PRYWGHPTY_ 0 0 0 REV__MER54A_dup630|chr19:11895206-11895760:-|2.1094898012235226|0.1505260151762002|3.81|151.0|3|1|sense REV__MER54A_dup630|chr19:11895206-11895760:-|2.1094898012235226|0.1505260151762002|3.81|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 588.7822265625 2 588.78289 1175.55123 NaN NaN NaN NaN NaN NaN NaN 39.331 1 43.061 42.561 43.561 3.7297 0 0 0 0.36505 1 6965 6965 7.2892 0.56607 1 + 31751 31438 20192 20203 36535 36535 -0.029526056053782668 PRYWGHPTY 9 Unmodified _PRYWGHPTY_ 0 0 0 REV__MER54A_dup630|chr19:11895206-11895760:-|2.1094898012235226|0.1505260151762002|3.81|151.0|3|1|sense REV__MER54A_dup630|chr19:11895206-11895760:-|2.1094898012235226|0.1505260151762002|3.81|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 588.78289 1175.55123 0.41997 0.00024727 -1.5491 -0.00091209 -1.1291 -0.00066482 589.2835281551141 39.673 0.056625 43.329 43.292 43.348 3.6557 0.18677 9.3524E-05 NaN 6.7232 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66529 + 31752 31438 20192 20203 -0.029526056053782668 PSAPRKKSNR 10 Unmodified _PSAPRKKSNR_ 0 0 0 REV__ENST00000589053.1_1_18:33077601-33077838:-|nuORF REV__ENST00000589053.1_1_18:33077601-33077838:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 571.3347778320312 2 570.833446 1139.65234 -0.4389 -0.00025054 0.48936 0.00027935 0.050461 2.8805E-05 570.8336311395113 13.252 0.18257 16.626 16.535 16.717 3.3734 34 21 3 0 0 0 0.56374 1 270 270 1.1933 0 1 25677 + 31753 19710 20193 20204 36536 36536 0.08809846097301488 PSCECWHG 8 Unmodified _PSCECWHG_ 0 0 0 ENST00000437551.5_1_2:113997680-113997956:+|nuORF ENST00000437551.5_1_2:113997680-113997956:+|nuORF ENST00000437551.5_1_2:113997680-113997956:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 459.6652526855469 2 459.66528 917.316008 0.031219 1.435E-05 -0.12289 -5.6487E-05 -0.091669 -4.2137E-05 459.6652561867837 47.929 0.70691 51.45 51.178 51.885 3.5219 75 48 2 0 0 0 0.82752 1 9547 9547 2.5775 0 1 173800 31754 6760 20194 20205 36537 36537 -0.14595782396816048 PSCECWHG 8 Unmodified _PSCECWHG_ 0 0 0 ENST00000437551.5_1_2:113997680-113997956:+|nuORF ENST00000437551.5_1_2:113997680-113997956:+|nuORF ENST00000437551.5_1_2:113997680-113997956:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 459.6653137207031 2 459.66528 917.316008 0.077218 3.5494E-05 -0.25937 -0.00011922 -0.18215 -8.373E-05 459.6652210138836 47.634 0.72118 51.37 51.099 51.82 3.7361 77 53 2 0 0 0 0.82752 1 9475 9475 2.5775 0 1 198850 31755 6760 20194 20205 36538 36538 -0.14595782396816048 PSCECWHG 8 Unmodified _PSCECWHG_ 0 0 0 ENST00000437551.5_1_2:113997680-113997956:+|nuORF ENST00000437551.5_1_2:113997680-113997956:+|nuORF ENST00000437551.5_1_2:113997680-113997956:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 459.75634765625 2 459.66528 917.316008 0.10232 4.7032E-05 -0.40063 -0.00018415 -0.29831 -0.00013712 459.66524601879985 47.935 0.68375 51.568 51.214 51.898 3.6339 63 44 2 0 0 0 0.72333 1 9531 9531 2.5775 0 1 163020 31756 6760 20194 20205 36539 36539 -0.14595782396816048 PSDFEVIQI 9 Unmodified _PSDFEVIQI_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS UPN48_class_I_Rep_1 5 524.27099609375 2 524.27149 1046.52843 0.35954 0.0001885 -0.56556 -0.00029651 -0.20602 -0.00010801 524.2709764521823 67.26 0.58383 70.712 70.453 71.036 3.4516 71 40 2 0 0 0 0.17897 4 15417 15377;15417;15452;15466 22.736 0 1 200150 31757 3195 20195 20206 36540;36541;36542;36543 36541 0.007023304865015234 PSDFEVIQI 9 Unmodified _PSDFEVIQI_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS UPN48_class_I_Rep_2 6 524.271240234375 2 524.27149 1046.52843 0.40462 0.00021213 -0.55205 -0.00028943 -0.14744 -7.7296E-05 524.2710466787028 67.124 0.61105 70.62 70.31 70.921 3.4964 60 39 2 0 0 0 0.17897 3 15378 15333;15378;15424 22.736 0 1 192200 31758 3195 20195 20206 36544;36545;36546 36545 0.007023304865015234 PSDFEVIQI 9 Unmodified _PSDFEVIQI_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS UPN48_class_I_Rep_3 7 524.2706909179688 2 524.27149 1046.52843 0.47853 0.00025088 -0.60246 -0.00031585 -0.12393 -6.4972E-05 524.2710245802137 66.995 0.34621 70.503 70.235 70.582 3.5077 38 20 2 0 0 0 0.17897 2 15216 15216;15253 22.736 0 1 204850 31759 3195 20195 20206 36547;36548 36547 0.007023304865015234 PSDFEVIQI 9 Unmodified _PSDFEVIQI_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS UPN48_class_I_Rep_3 7 524.2713623046875 2 524.27149 1046.52843 0.48022 0.00025177 -0.69524 -0.00036449 -0.21502 -0.00011273 524.2710168815022 67.122 0.1868 70.63 70.582 70.768 3.5077 27 14 2 0 0 0 0.090251 1 15298 15298 36.127 0 1 209050 31760 3195 20195 20206 36549 36549 0.007023304865015234 PSEMACDGSPA 11 Unmodified _PSEMACDGSPA_ 0 0 0 REV__nc|ENSG00000166484|Q13164-4|MAPK7 REV__nc|ENSG00000166484|Q13164-4|MAPK7 MULTI-MSMS UPN46_class_I_Rep_3 1 532.704345703125 2 532.704799 1063.39505 0.050352 2.6823E-05 -0.31879 -0.00016982 -0.26844 -0.000143 532.7046135835152 28.684 0.44959 28.684 28.596 29.046 0 46 32 2 0 0 0 0.59712 1 4484 4484 5.2969 0 1 91787 + 31761 20178 20196 20207 36550 36550 -0.13411599953178666 PSFTVTYGKL 10 Unmodified _PSFTVTYGKL_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.802490234375 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 82.562 1 85.899 85.399 86.399 3.337 0 0 0 0.53105 1 20694 20694 1.4819 0 1 31762 2579 20197 20208 36551 36551 0.040028962745282115 PSGGFREASI 10 Unmodified _PSGGFREASI_ 0 0 0 ENST00000535229.1_1_6:166195147-166399619:-|nuORF ENST00000535229.1_1_6:166195147-166399619:-|nuORF ENST00000535229.1_1_6:166195147-166399619:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 511.26983642578125 2 510.759081 1019.50361 0.21943 0.00011208 -0.3935 -0.00020098 -0.17407 -8.8908E-05 510.7588980964101 47.732 0.58064 51.468 51.23 51.811 3.7361 57 39 2 0 0 0 0.4965 1 9507 9507 12.241 1.4167 1 162370 31763 7326 20198 20209 36552 36552 -0.005363045962326396 PSGPLNGHKHK 11 Unmodified _PSGPLNGHKHK_ 0 0 0 REV__Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|42|1|anti-sense REV__Tigger3b_dup6110|chr20:50899520-50900448:+|1.5005470507883267|0.2184867230145559|2.78|151.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 586.318603515625 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.48 1 104.09 103.59 104.59 3.6084 0 0 0 0.37149 1 24268 24268 7.609 2.3121 1 + 31764 32766 20199 20210 36553 36553 0.047301572059723185 PSGTEVFFN 9 Unmodified _PSGTEVFFN_ 0 0 0 REV__AluJo_dup22178|chr5:143282942-143283173:-|1.5196553766608576|0.306367925050023|2.31|151.0|19|3|anti-sense REV__AluJo_dup22178|chr5:143282942-143283173:-|1.5196553766608576|0.306367925050023|2.31|151.0|19|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.2350158691406 2 499.234907 996.455261 0.19297 9.6339E-05 0.49243 0.00024584 0.68541 0.00034218 499.2349400253995 77.098 0.78741 80.513 80.149 80.936 3.4149 139 71 3 0 0 0 0.35081 1 19076 19076 10.824 0 1 363190 + 31765 16990 20200 20211 36554 36554 -0.04310798236133451 PSGTEVFFN 9 Unmodified _PSGTEVFFN_ 0 0 0 REV__AluJo_dup22178|chr5:143282942-143283173:-|1.5196553766608576|0.306367925050023|2.31|151.0|19|3|anti-sense REV__AluJo_dup22178|chr5:143282942-143283173:-|1.5196553766608576|0.306367925050023|2.31|151.0|19|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 499.234907 996.455261 0.25908 0.00012934 0.27208 0.00013583 0.53116 0.00026517 499.2348748250381 77.245 0.81262 80.577 80.267 81.079 3.3315 0.025578 -6.5059E-05 NaN 10.824 201 82 3 NaN NaN NaN NaN 0 NaN NaN 0 402220 + 31766 16990 20200 20211 -0.04310798236133451 PSGWLSGVYIY 11 Unmodified _PSGWLSGVYIY_ 0 0 0 REV__L1MC1_dup9593|chr12:12773550-12774262:+|1.851440627143168|0.0354275280746385|5.71|151.0|43|3|anti-sense REV__L1MC1_dup9593|chr12:12773550-12774262:+|1.851440627143168|0.0354275280746385|5.71|151.0|43|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 621.3130493164062 2 621.313689 1240.61282 0.47043 0.00029229 -0.1193 -7.4123E-05 0.35113 0.00021816 621.3135156800772 60.972 2.3501 64.237 63.8 66.15 3.2654 528 174 5 0 0 0 0.28469 1 14613 14613 17.113 2.2746 1 4187000 + 31767 26627 20201 20212 36555 36555 0.0021428130326057726 PSGWLSGVYIY 11 Unmodified _PSGWLSGVYIY_ 0 0 0 REV__L1MC1_dup9593|chr12:12773550-12774262:+|1.851440627143168|0.0354275280746385|5.71|151.0|43|3|anti-sense REV__L1MC1_dup9593|chr12:12773550-12774262:+|1.851440627143168|0.0354275280746385|5.71|151.0|43|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 621.3136596679688 2 621.313689 1240.61282 0.39001 0.00024232 -0.061047 -3.793E-05 0.32896 0.00020439 621.3135651502976 61.103 2.5251 64.268 63.769 66.294 3.1651 496 188 4 0 0 0 0.28469 1 14702 14702 17.113 2.2746 1 4879800 + 31768 26627 20201 20212 36556 36556 0.0021428130326057726 PSHSPLITPL 10 Unmodified _PSHSPLITPL_ 0 0 0 REV__ENST00000474427.6_1_6:134492636-134492894:-|nuORF REV__ENST00000474427.6_1_6:134492636-134492894:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 531.3026123046875 2 531.303124 1060.5917 0.46425 0.00024666 -0.39416 -0.00020942 0.070091 3.7239E-05 531.3028001572092 64.159 0.81971 67.634 67.183 68.002 3.4743 104 62 2 0 0 0 0.48573 2 14513 14513;14564 13.042 0 1 533310 + 31769 22523 20202 20213 36557;36558 36557 0.06382315994369492 PSHSPLITPL 10 Unmodified _PSHSPLITPL_ 0 0 0 REV__ENST00000474427.6_1_6:134492636-134492894:-|nuORF REV__ENST00000474427.6_1_6:134492636-134492894:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 531.3025512695312 2 531.303124 1060.5917 0.52827 0.00028067 -1.1993 -0.00063719 -0.67103 -0.00035652 531.3022042544382 63.857 1.8915 67.365 67.01 68.901 3.5083 197 154 2 0 0 0 0.52083 3 14396 14396;14438;14443 9.3831 0 1 679050 + 31770 22523 20202 20213 36559;36560;36561 36559 0.06382315994369492 PSICCLRETH 10 Unmodified _PSICCLRETH_ 0 0 0 L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|178|3|sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|178|3|sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|178|3|sense MSMS UPN46_class_I_Rep_3 1 580.1041259765625 2 579.773351 1157.53215 NaN NaN NaN NaN NaN NaN NaN 27.83 1 27.83 27.33 28.33 0 0 0 0 0.53105 1 4187 4187 1.4819 0.28856 1 31771 15220 20203 20214 36562 36562 -0.040316462829650845 PSILLQRERAL 11 Unmodified _PSILLQRERAL_ 0 0 0 nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2 nc|ENSG00000006744|Q9BQ52-3|ELAC2 nc|ENSG00000006744|Q9BQ52-3|ELAC2 MULTI-SECPEP UPN48_class_I_Rep_3 7 432.8851013183594 3 432.597983 1294.77212 0.13276 5.7433E-05 -1.6858 -0.00072926 -1.553 -0.00067183 432.5972207506855 100.93 0.13866 104.75 104.68 104.82 3.8153 29 18 4 0 0 0 22.551 1 23885 23885 1.2148 0.70888 1 205320 31772 725 20204 20215 36563 36563 0.13652414651232903 PSITRRRRR 9 Unmodified _PSITRRRRR_ 0 0 0 REV__L1PA4_dup148|chr1:58488963-58490795:+|1.3864768318433958|0.0788742791813521|4.14|151.0|42|3|sense REV__L1PA4_dup148|chr1:58488963-58490795:+|1.3864768318433958|0.0788742791813521|4.14|151.0|42|3|sense MSMS UPN48_class_I_Rep_3 7 599.3729858398438 2 599.373604 1196.73265 NaN NaN NaN NaN NaN NaN NaN 88.059 1 91.87 91.37 92.37 3.8104 0 0 0 0.39518 1 20898 20898 1.8442 0 1 + 31773 29610 20205 20216 36564 36564 0.1421575221099829 PSKGKIRFF 9 Unmodified _PSKGKIRFF_ 0 0 0 L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|52|2|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|52|2|sense L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|52|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.321651 1078.62875 0.15683 8.4738E-05 -0.045153 -2.4397E-05 0.11167 6.034E-05 540.3215709815137 32.454 0.12507 32.454 32.427 32.552 0 9 8 2 0 0 0 0.48846 1 5556 5556 1.8442 0 1 185090 31774 13828 20206 20217 36565 36565 0.09258032330785682 PSKIKRYYL 9 Unmodified _PSKIKRYYL_ 0 0 0 L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|18|3|sense L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|18|3|sense L1ME3A_dup10577|chr11:76081710-76082251:+|1.3842873967316658|0.0211179938723838|6.03|151.0|18|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 0.30549 0.00017851 0.13262 7.7494E-05 0.4381 0.000256 584.3478322922473 31.854 0.10639 31.854 31.783 31.889 0 16 8 2 0 0 0 0.48643 1 5366 5366 2.0598 0 1 187720 31775 12622 20207 20218 36566 36566 0.10450570673765469 PSKKPPRVNG 10 Unmodified _PSKKPPRVNG_ 0 0 0 REV__L1MA9_dup1029|chr2:57933605-57935489:-|1.7248074794365074|0.0336479439912162|5.68|151.0|46|3|sense REV__L1MA9_dup1029|chr2:57933605-57935489:-|1.7248074794365074|0.0336479439912162|5.68|151.0|46|3|sense MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.31964 1078.62473 NaN NaN NaN NaN NaN NaN NaN 32.792 1 32.792 32.292 33.292 0 0 0 0 0.53105 1 5656 5656 1.3295 0.5359 1 + 31776 25581 20208 20219 36567 36567 0.0885594283708997 PSKPGLQSG 9 Unmodified _PSKPGLQSG_ 0 0 0 REV__ENSG00000174776|ENST00000682715|WDR49 REV__ENSG00000174776|ENST00000682715|WDR49 MULTI-MSMS UPN47_class_I_Rep_2 3 435.7375793457031 2 435.737617 869.460681 -0.75433 -0.00032869 0.95474 0.00041602 0.20041 8.7327E-05 435.73789478360925 32.331 0.75235 35.786 35.469 36.221 3.4547 113 54 3 0 0 0 0.31677 1 5589 5589 12.873 0.63195 1 181490 + 31777 20532 20209 20220 36568 36568 0.02072925346340071 PSKWMQKLK 9 Unmodified _PSKWMQKLK_ 0 0 0 REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF MSMS UPN48_class_I_Rep_1 5 573.329833984375 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 88.611 1 92.234 91.734 92.734 3.6229 0 0 0 0.37476 1 21261 21261 6.7232 0.99131 1 + 31778 19275 20210 20221 36569 36569 0.0761494176758788 PSKWMQKLK 9 Unmodified _PSKWMQKLK_ 0 0 0 REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF MSMS UPN48_class_I_Rep_2 6 573.3295288085938 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 88.409 1 92.143 91.643 92.643 3.734 0 0 0 0.39598 1 21047 21047 1.6526 0.17072 1 + 31779 19275 20210 20221 36570 36570 0.0761494176758788 PSKWMQKLK 9 Unmodified _PSKWMQKLK_ 0 0 0 REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF MSMS UPN48_class_I_Rep_3 7 573.3289184570312 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 89.325 1 93.155 92.655 93.655 3.8293 0 0 0 0.37692 1 21202 21202 6.2058 0.47393 1 + 31780 19275 20210 20221 36571 36571 0.0761494176758788 PSKWMQKLK 9 Unmodified _PSKWMQKLK_ 0 0 0 REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF MSMS UPN48_class_I_Rep_3 7 573.3292236328125 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 89.655 1 93.484 92.984 93.984 3.8293 0 0 0 0.37692 1 21291 21291 6.2058 0.9089 1 + 31781 19275 20210 20221 36572 36572 0.0761494176758788 PSLFIFRSG 9 Unmodified _PSLFIFRSG_ 0 0 0 nc|ENSG00000077232|Q8IXB1-3|DNAJC10;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000494462.1_1_2:183593610-183593745:+|nuORF nc|ENSG00000077232|Q8IXB1-3|DNAJC10 nc|ENSG00000077232|Q8IXB1-3|DNAJC10 MSMS UPN48_class_I_Rep_2 6 512.2832641601562 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 103 1 106.71 106.21 107.21 3.7108 0 0 0 0.38639 1 24384 24384 3.9444 0 1 31782 1168 20211 20222 36573 36573 0.04454064168464811 PSLFSLESEI 10 Unmodified _PSLFSLESEI_ 0 0 0 REV__L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|51|3|anti-sense REV__L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|51|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 561.291748046875 2 561.289879 1120.56521 0.42844 0.00024048 0.96985 0.00054436 1.3983 0.00078484 561.290410555907 80.766 0.54272 84.253 84.035 84.578 3.4874 105 56 2 0 0 0 0.21192 6 20135 20097;20105;20135;20148;20183;20194 49.933 11.959 1 195800 + 31783 24658 20212 20223 36574;36575;36576;36577;36578;36579 36576 0.009745823123921582 PSLFSLESEI 10 Unmodified _PSLFSLESEI_ 0 0 0 REV__L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|51|3|anti-sense REV__L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|51|3|anti-sense MSMS UPN47_class_I_Rep_1 2 561.289794921875 2 561.289879 1120.56521 NaN NaN NaN NaN NaN NaN NaN 81.092 1 84.579 84.079 85.079 3.4874 0 0 0 0.53105 1 20225 20225 17.113 0 1 + 31784 24658 20212 20223 36580 36580 0.009745823123921582 PSLFSLESEI 10 Unmodified _PSLFSLESEI_ 0 0 0 REV__L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|51|3|anti-sense REV__L1M5_dup33682|chr10:5686405-5687091:-|1.870141830402009|0.2761787996149704|2.76|151.0|51|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 561.2903442382812 2 561.289879 1120.56521 0.5102 0.00028637 0.91864 0.00051562 1.4288 0.00080199 561.2903635285187 81.004 0.54587 84.388 84.128 84.673 3.3839 116 68 2 0 0 0 0.2363 6 20148 20109;20115;20148;20178;20181;20211 39.95 10.868 1 445730 + 31785 24658 20212 20223 36581;36582;36583;36584;36585;36586 36583 0.009745823123921582 PSLLFFFFD 9 Unmodified _PSLLFFFFD_ 0 0 0 REV__Tigger1_dup10910|chr17:57297245-57298424:-|1.930206038945857|0.0273564730863181|6.14|150.0|86|3|anti-sense REV__Tigger1_dup10910|chr17:57297245-57298424:-|1.930206038945857|0.0273564730863181|6.14|150.0|86|3|anti-sense MSMS UPN48_class_I_Rep_3 7 566.79150390625 2 566.789318 1131.56408 NaN NaN NaN NaN NaN NaN NaN 79.306 1 82.948 82.448 83.448 3.6423 0 0 0 0.39518 1 18801 18801 1.8442 0 1 + 31786 32343 20213 20224 36587 36587 0.003564127341405765 PSLLPLFGF 9 Unmodified _PSLLPLFGF_ 0 0 0 L1MD2_dup6647|chrX:124005256-124005741:-|1.1953313573709108|0.0089518723165215|7.06|151.0|17|1|anti-sense L1MD2_dup6647|chrX:124005256-124005741:-|1.1953313573709108|0.0089518723165215|7.06|151.0|17|1|anti-sense L1MD2_dup6647|chrX:124005256-124005741:-|1.1953313573709108|0.0089518723165215|7.06|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 495.79571533203125 2 495.786579 989.558604 NaN NaN NaN NaN NaN NaN NaN 65.839 1 69.024 68.524 69.524 3.1853 0 0 0 0.381 1 15839 15839 5.2307 0 1 31787 12017 20214 20225 36588 36588 0.06340733942340648 PSLLRVFH 8 Unmodified _PSLLRVFH_ 0 0 0 L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|218|3|anti-sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|218|3|anti-sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|218|3|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7878112792969 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.534 1 46.042 45.542 46.542 3.5079 0 0 0 0.39624 1 7878 7878 9.3474 0 1 31788 9506 20215 20226 36589 36589 0.07525787750944346 PSLRYLTLS 9 Unmodified _PSLRYLTLS_ 0 0 0 REV__ENST00000583260.1_1_17:62009328-62009508:-|nuORF REV__ENST00000583260.1_1_17:62009328-62009508:-|nuORF MSMS UPN47_class_I_Rep_3 4 525.2883911132812 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 58.714 1 61.88 61.38 62.38 3.1658 0 0 0 0.38916 1 13664 13664 3.2813 0.28607 1 + 31789 23131 20216 20227 36590 36590 0.06934315994362805 PSLSPTPPPA 10 Unmodified _PSLSPTPPPA_ 0 0 0 REV__ENST00000463608.5_1_22:21830433-21838406:-|nuORF REV__ENST00000463608.5_1_22:21830433-21838406:-|nuORF MSMS UPN48_class_I_Rep_1 5 482.27191162109375 2 482.260925 962.507297 NaN NaN NaN NaN NaN NaN NaN 89.716 1 93.342 92.842 93.842 3.6255 0 0 0 0.53105 1 21554 21554 1.6526 0 1 + 31790 22449 20217 20228 36591 36591 0.024543651776070874 PSLTATAAVL 10 Unmodified _PSLTATAAVL_ 0 0 0 L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.2760009765625 2 472.276575 942.538597 -0.20572 -9.7155E-05 -0.47707 -0.00022531 -0.68279 -0.00032246 472.2760831720979 44.02 0.68421 47.715 47.326 48.01 3.6951 92 42 3 0 0 0 0.51565 2 9084 9042;9084 10.074 0 1 199750 31791 15475 20218 20229 36592;36593 36593 0.06502938211690434 PSLTATAAVL 10 Unmodified _PSLTATAAVL_ 0 0 0 L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.27569580078125 2 472.276575 942.538597 -0.18058 -8.5284E-05 -0.56286 -0.00026582 -0.74344 -0.00035111 472.27605566937655 44.263 0.68181 47.618 47.313 47.995 3.3556 87 43 3 0 0 0 0.51565 1 9193 9193 10.074 0 1 180940 31792 15475 20218 20229 36594 36594 0.06502938211690434 PSLTATAAVL 10 Unmodified _PSLTATAAVL_ 0 0 0 L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2767333984375 2 472.276575 942.538597 -0.25405 -0.00011998 -0.36592 -0.00017282 -0.61997 -0.0002928 472.2761139236807 44.46 0.80145 47.704 47.288 48.089 3.2441 85 48 3 0 0 0 0.51565 2 9304 9263;9304 10.074 0 1 195650 31793 15475 20218 20229 36595;36596 36596 0.06502938211690434 PSLYLWWNS 9 Unmodified _PSLYLWWNS_ 0 0 0 L1PA11_dup4011|chr21:15880362-15883307:-|2.542590275635026|0.3228385825684085|2.98|151.0|191|3|anti-sense L1PA11_dup4011|chr21:15880362-15883307:-|2.542590275635026|0.3228385825684085|2.98|151.0|191|3|anti-sense L1PA11_dup4011|chr21:15880362-15883307:-|2.542590275635026|0.3228385825684085|2.98|151.0|191|3|anti-sense MSMS UPN48_class_I_Rep_3 7 583.2887573242188 2 583.287474 1164.5604 NaN NaN NaN NaN NaN NaN NaN 27.232 1 30.988 30.488 31.488 3.7555 0 0 0 0.3967 1 3549 3549 1.4819 0.15237 1 31794 13686 20219 20230 36597 36597 -0.015302570397125237 PSMDEWDKE 9 Unmodified _PSMDEWDKE_ 0 0 0 L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|52|2|sense L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|52|2|sense L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 568.7313842773438 2 568.731871 1135.44919 NaN NaN NaN NaN NaN NaN NaN 29.212 1 32.704 32.204 33.204 3.4923 0 0 0 0.39518 1 4645 4645 1.8442 0 1 31795 8706 20220 20231 36598 36598 -0.11311684529982813 PSMRLGHMQ 9 Unmodified _PSMRLGHMQ_ 0 0 0 nc|ENSG00000205726|Q15811-5|ITSN1 nc|ENSG00000205726|Q15811-5|ITSN1 nc|ENSG00000205726|Q15811-5|ITSN1 MSMS UPN48_class_I_Rep_1 5 528.7581176757812 2 528.757504 1055.50045 NaN NaN NaN NaN NaN NaN NaN 76.189 1 79.688 79.188 80.188 3.4996 0 0 0 0.38916 1 18088 18088 3.2813 0 1 31796 16809 20221 20232 36599 36599 -0.02507594246253575 PSNSFGPLRL 10 Unmodified _PSNSFGPLRL_ 0 0 0 REV__AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|12|1|anti-sense REV__AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 544.3006591796875 2 544.298373 1086.58219 NaN NaN NaN NaN NaN NaN NaN 36.784 1 40.487 39.987 40.987 3.7021 0 0 0 0.53105 1 6221 6221 4.897 0.95262 1 + 31797 17093 20222 20233 36600 36600 0.04236547708865146 PSNVIAFIH 9 Unmodified _PSNVIAFIH_ 0 0 0 REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|63|1|anti-sense REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 499.2742614746094 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 50.866 1 54.082 53.582 54.582 3.2163 0 0 0 0.39428 1 11274 11274 2.0598 0 1 + 31798 25305 20223 20234 36601 36601 0.04085777651414446 PSNVIAFIH 9 Unmodified _PSNVIAFIH_ 0 0 0 REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|63|1|anti-sense REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_1 5 499.2745666503906 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 68.955 1 72.41 71.91 72.91 3.4548 0 0 0 0.39326 1 15960 15960 2.3027 0.24298 1 + 31799 25305 20223 20234 36602 36602 0.04085777651414446 PSPFLLLS 8 Unmodified _PSPFLLLS_ 0 0 0 ENST00000535011.6_1_7:128409341-128409416:+|nuORF ENST00000535011.6_1_7:128409341-128409416:+|nuORF ENST00000535011.6_1_7:128409341-128409416:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 436.93975830078125 2 437.257654 872.500755 -0.047133 -2.0609E-05 4.2771 0.0018702 4.23 0.0018496 437.25952917090166 46.063 0.070698 49.582 49.552 49.623 3.5192 5 4 2 0 0 0 0.72333 1 8955 8955 9.3474 0 1 37965 31800 7323 20224 20235 36603 36603 0.059404720169141 PSPFLLLS 8 Unmodified _PSPFLLLS_ 0 0 0 ENST00000535011.6_1_7:128409341-128409416:+|nuORF ENST00000535011.6_1_7:128409341-128409416:+|nuORF ENST00000535011.6_1_7:128409341-128409416:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 437.257654 872.500755 0.021288 9.3083E-06 6.6732 0.0029179 6.6945 0.0029272 437.2606261982244 45.933 0.056549 49.691 49.656 49.712 3.7579 0.054419 0.00032368 NaN 9.3474 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 21601 31801 7323 20224 20235 0.059404720169141 PSPGKPHLH 9 Unmodified _PSPGKPHLH_ 0 0 0 ENST00000407479.5_1_16:3712726-3712951:+|nuORF ENST00000407479.5_1_16:3712726-3712951:+|nuORF ENST00000407479.5_1_16:3712726-3712951:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.2678527832031 2 485.266876 968.519199 NaN NaN NaN NaN NaN NaN NaN 93.781 1 97.551 97.051 98.051 3.77 0 0 0 0.39428 1 22300 22300 2.0598 0 1 31802 6618 20225 20236 36604 36604 0.0336802671146188 PSPGSPLSRSL 11 Unmodified _PSPGSPLSRSL_ 0 0 0 REV__ENST00000460959.5_1_14:105957646-105957931:+|nuORF REV__ENST00000460959.5_1_14:105957646-105957931:+|nuORF MSMS UPN47_class_I_Rep_1 2 549.3008422851562 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 99.459 1 103.25 102.75 103.75 3.7942 0 0 0 0.38417 1 24592 24592 2.7352 0.43246 1 + 31803 20854 20226 20237 36605 36605 0.04324226500648365 PSPGSVSSLRK 11 Unmodified _PSPGSVSSLRK_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS UPN48_class_I_Rep_1 5 557.8156127929688 2 557.814387 1113.61422 0.47307 0.00026388 -0.30893 -0.00017233 0.16414 9.1557E-05 557.81415382561 90.091 0.31152 93.717 93.55 93.862 3.6255 45 38 2 0 0 0 0.65559 1 21650 21650 2.7352 1.0826 1 86105 + 31804 20617 20227 20238 36606 36606 0.06195915392004281 PSPGSVSSLRK 11 Unmodified _PSPGSVSSLRK_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MSMS UPN48_class_I_Rep_3 7 557.8140258789062 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 89.958 1 93.805 93.305 94.305 3.847 0 0 0 0.38417 1 21361 21361 2.7352 0 1 + 31805 20617 20227 20238 36607 36607 0.06195915392004281 PSPGSVSSLRK 11 Unmodified _PSPGSVSSLRK_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MSMS UPN48_class_I_Rep_3 7 557.8140869140625 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 90.006 1 93.853 93.353 94.353 3.847 0 0 0 0.38417 1 21372 21372 2.7352 0 1 + 31806 20617 20227 20238 36608 36608 0.06195915392004281 PSPGSVSSLRK 11 Unmodified _PSPGSVSSLRK_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MSMS UPN48_class_I_Rep_3 7 557.8138427734375 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 90.373 1 94.22 93.72 94.72 3.847 0 0 0 0.38417 1 21450 21450 2.7352 0 1 + 31807 20617 20227 20238 36609 36609 0.06195915392004281 PSPHPVVH 8 Unmodified _PSPHPVVH_ 0 0 0 L1MA7_dup1768|chr4:39019679-39020407:-|1.205108798702305|0.0055419075823035|7.76|151.0|34|1|anti-sense L1MA7_dup1768|chr4:39019679-39020407:-|1.205108798702305|0.0055419075823035|7.76|151.0|34|1|anti-sense L1MA7_dup1768|chr4:39019679-39020407:-|1.205108798702305|0.0055419075823035|7.76|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 435.228515625 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 35.508 1 39.196 38.696 39.696 3.6877 0 0 0 0.40738 1 5861 5861 0.79363 0.10326 1 31808 10011 20228 20239 36610 36610 0.01604666274374722 PSPLLDALR 9 Unmodified _PSPLLDALR_ 0 0 0 L1MCa_dup4905|chr10:43180200-43181441:-|1.40505993305447|0.2571158340223911|2.45|151.0|74|2|anti-sense L1MCa_dup4905|chr10:43180200-43181441:-|1.40505993305447|0.2571158340223911|2.45|151.0|74|2|anti-sense L1MCa_dup4905|chr10:43180200-43181441:-|1.40505993305447|0.2571158340223911|2.45|151.0|74|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.795654296875 2 491.290017 980.565481 0.18619 9.1473E-05 0.52479 0.00025783 0.71098 0.0003493 491.28913265228385 53.518 1.0287 57.037 56.544 57.573 3.5192 144 73 3 0 0 0 0.36392 1 11299 11299 10.074 0.72649 1 680260 31809 11818 20229 20240 36611 36611 0.07442046822882276 PSPLVILVI 9 Unmodified _PSPLVILVI_ 0 0 0 REV__L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|49|2|anti-sense REV__L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|49|2|anti-sense MSMS UPN47_class_I_Rep_3 4 475.7725830078125 2 475.817879 949.621205 NaN NaN NaN NaN NaN NaN NaN 66.505 1 69.691 69.191 70.191 3.1853 0 0 0 0.39428 1 16045 16045 2.0598 0 1 + 31810 26692 20230 20241 36612 36612 0.14437880010507342 PSPPRVVF 8 Unmodified _PSPPRVVF_ 0 0 0 L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 449.7608337402344 2 449.760895 897.507237 0.17976 8.085E-05 -0.91603 -0.00041199 -0.73626 -0.00033114 449.7603753905964 108.77 0.28633 112.41 112.29 112.58 3.6355 41 24 2 0 0 0 0.82752 1 26752 26752 5.2307 5.2307 1 9542000 31811 12331 20231 20242 36613 36613 0.054384099682806664 PSPPRVVF 8 Unmodified _PSPPRVVF_ 0 0 0 L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 449.760895 897.507237 0.026577 1.1953E-05 -0.65244 -0.00029344 -0.62586 -0.00028149 449.7604997522647 108.84 0.45699 112.38 112.2 112.65 3.5333 -0.044116 0.00014763 NaN 5.2307 92 50 2 NaN NaN NaN NaN 0 NaN NaN 0 10288000 31812 12331 20231 20242 0.054384099682806664 PSPPRVVF 8 Unmodified _PSPPRVVF_ 0 0 0 L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 449.760895 897.507237 -0.18397 -8.2744E-05 -0.65697 -0.00029548 -0.84094 -0.00037822 449.76047210011245 108.82 0.41818 112.35 112.23 112.65 3.5382 -0.064705 0.00014355 NaN 5.2307 71 44 2 NaN NaN NaN NaN 0 NaN NaN 0 7692600 31813 12331 20231 20242 0.054384099682806664 PSPPRVVF 8 Unmodified _PSPPRVVF_ 0 0 0 L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 449.760895 897.507237 0.0034934 1.5712E-06 -0.79323 -0.00035676 -0.78974 -0.00035519 449.760375929399 108.81 0.42684 112.44 112.29 112.71 3.6321 0.023292 2.0983E-05 NaN 5.2307 111 48 3 NaN NaN NaN NaN 0 NaN NaN 0 7981000 31814 12331 20231 20242 0.054384099682806664 PSPPRVVF 8 Unmodified _PSPPRVVF_ 0 0 0 L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 449.760895 897.507237 0.1494 6.7196E-05 -1.0294 -0.00046298 -0.87998 -0.00039578 449.76031995725447 108.82 0.39975 112.49 112.38 112.78 3.6746 0.073578 -0.00019145 NaN 5.2307 81 47 2 NaN NaN NaN NaN 0 NaN NaN 0 6009600 31815 12331 20231 20242 0.054384099682806664 PSPPRVVF 8 Unmodified _PSPPRVVF_ 0 0 0 L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense L1ME1_dup25685|chr15:44471054-44471293:-|1.0067487401797952|0.0092334738581092|6.77|150.0|13|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 449.760895 897.507237 0.16475 7.4098E-05 -0.93755 -0.00042167 -0.7728 -0.00034757 449.76038325746543 108.77 0.30332 112.44 112.33 112.63 3.6751 0.021202 -0.00010883 NaN 5.2307 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 4706400 31816 12331 20231 20242 0.054384099682806664 PSPSAAMSDPP 11 Unmodified _PSPSAAMSDPP_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MSMS UPN47_class_I_Rep_3 4 528.7390747070312 2 528.736957 1055.45936 NaN NaN NaN NaN NaN NaN NaN 26.608 1 29.956 29.456 30.456 3.3478 0 0 0 0.38417 1 3918 3918 1.1933 0.39971 1 + 31817 17533 20232 20243 36614 36614 -0.06615076804746423 PSPSTPPYEL 10 Unmodified _PSPSTPPYEL_ 0 0 0 ENST00000562272.5_1_16:23701579-23701669:+|nuORF ENST00000562272.5_1_16:23701579-23701669:+|nuORF ENST00000562272.5_1_16:23701579-23701669:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 544.2686767578125 2 544.268947 1086.52334 0.5459 0.00029712 0.16988 9.2461E-05 0.71578 0.00038958 544.2689419947064 61.187 0.8368 64.666 64.3 65.137 3.4785 191 69 4 0 0 0 0.48573 1 13690 13690 13.042 0 1 1134500 31818 7466 20233 20244 36615 36615 -0.01645973376139409 PSPSVLLVFLK 11 Unmodified _PSPSVLLVFLK_ 0 0 0 HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|41|3|anti-sense HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|41|3|anti-sense HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_3 4 600.3756713867188 2 600.373549 1198.73255 NaN NaN NaN NaN NaN NaN NaN 85.734 1 89.106 88.606 89.606 3.3716 0 0 0 0.38417 1 21481 21481 1.1933 0 1 31819 7963 20234 20245 36616 36616 0.14112894647814755 PSPVKWRL 8 Unmodified _PSPVKWRL_ 0 0 0 L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|3|1|sense L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|3|1|sense L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 491.7958679199219 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 72.348 1 75.575 75.075 76.075 3.2271 0 0 0 0.40746 1 17805 17805 0.69038 0 1 31820 9006 20235 20246 36617 36617 0.08446074267999393 PSPVKWRL 8 Unmodified _PSPVKWRL_ 0 0 0 L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|3|1|sense L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|3|1|sense L1M4b_dup3296|chr13:21558324-21559233:-|1.8152526970923728|0.0190779909438747|6.57|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 491.7961730957031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 77.424 1 80.946 80.446 81.446 3.5221 0 0 0 0.40746 1 18425 18425 0.69038 0 1 31821 9006 20235 20246 36618 36618 0.08446074267999393 PSPVPILQL 9 Unmodified _PSPVPILQL_ 0 0 0 REV__L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|21|1|anti-sense REV__L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.29937744140625 2 482.29731 962.580068 NaN NaN NaN NaN NaN NaN NaN 105.98 1 109.61 109.11 110.11 3.6277 0 0 0 0.39428 1 25540 25540 2.0598 0 1 + 31822 26286 20236 20247 36619 36619 0.097281189710543 PSQHVVWH 8 Unmodified _PSQHVVWH_ 0 0 0 REV__L1MB7_dup10715|chr9:36452235-36452534:-|1.1545274573158917|0.0027368286102686|8.72|151.0|16|1|anti-sense REV__L1MB7_dup10715|chr9:36452235-36452534:-|1.1545274573158917|0.0027368286102686|8.72|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.2488708496094 2 495.251226 988.487899 NaN NaN NaN NaN NaN NaN NaN 60.835 1 64.348 63.848 64.848 3.5129 0 0 0 0.40331 1 13395 13395 6.2058 2.9245 1 + 31823 26119 20237 20248 36620 36620 -0.00680546322621467 PSQQMHMTF 9 Unmodified _PSQQMHMTF_ 0 0 0 REV__L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|55|1|anti-sense REV__L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.6941528320312 2 553.741519 1105.46849 NaN NaN NaN NaN NaN NaN NaN 116.5 1 120 119.5 120.5 3.4965 0 0 0 0.39598 1 28446 28446 1.6526 0.85899 1 + 31824 28528 20238 20249 36621 36621 -0.08003006720059602 PSQRLWAH 8 Unmodified _PSQRLWAH_ 0 0 0 ENST00000527357.5_1_11:799959-801918:-|nuORF ENST00000527357.5_1_11:799959-801918:-|nuORF ENST00000527357.5_1_11:799959-801918:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.7655029296875 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 71.762 1 71.762 71.262 72.262 0 0 0 0 0.40738 1 16551 16551 0.79363 0 1 31825 7269 20239 20250 36622 36622 0.01743142568705025 PSQRNLEPPE 10 Unmodified _PSQRNLEPPE_ 0 0 0 REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 MULTI-MSMS UPN46_class_I_Rep_3 1 583.7904663085938 2 583.793652 1165.57275 0.11508 6.7182E-05 -0.070828 -4.1349E-05 0.04425 2.5833E-05 583.7935883905401 23.276 0.96188 23.276 22.879 23.84 0 139 94 2 0 0 0 0.56309 1 3003 3003 1.6526 0 1 99708 + 31826 20265 20240 20251 36623 36623 -0.0034126536731946544 PSRAKRKPQG 10 Unmodified _PSRAKRKPQG_ 0 0 0 REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|128|3|sense REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|128|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 562.3349609375 2 562.835988 1123.65742 0.63497 0.00035738 2.0023 0.001127 2.6373 0.0014844 563.3392898409533 108.68 0.72885 112.21 112.08 112.81 3.5333 209 87 3 0 0 0 0.84575 1 26513 26513 12.241 0 1 79523000 + 31827 28935 20241 20252 36624 36624 0.10054149959933056 PSRAKRKPQG 10 Unmodified _PSRAKRKPQG_ 0 0 0 REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|128|3|sense REV__L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|128|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 562.3344116210938 2 562.835988 1123.65742 0.43782 0.00024642 2.4891 0.0014009 2.9269 0.0016474 563.3395707594402 108.64 0.72454 112.27 112.17 112.89 3.6321 202 87 3 0 0 0 0.84575 1 26335 26335 12.241 2.1667 1 64847000 + 31828 28935 20241 20252 36625 36625 0.10054149959933056 PSRGCLFTL 9 Unmodified _PSRGCLFTL_ 0 0 0 L1MA4A_dup1134|chr3:87847394-87848527:-|1.8214203907859363|0.0093611536318745|7.6|134.0|64|2|anti-sense L1MA4A_dup1134|chr3:87847394-87848527:-|1.8214203907859363|0.0093611536318745|7.6|134.0|64|2|anti-sense L1MA4A_dup1134|chr3:87847394-87848527:-|1.8214203907859363|0.0093611536318745|7.6|134.0|64|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 497.7703552246094 2 497.262945 992.511337 -0.17753 -8.8279E-05 3.1685 0.0015756 2.991 0.0014873 497.26288052411047 42.886 0.36787 46.574 46.451 46.819 3.6875 44 26 2 0 0 0 0.12354 1 8838 8838 3.5965 0 1 54309 31829 9754 20242 20253 36626 36626 0.01478131399699123 PSRGRLHVPG 10 Unmodified _PSRGRLHVPG_ 0 0 0 REV__nc|ENSG00000175854|Q1ZZU3|SWI5 REV__nc|ENSG00000175854|Q1ZZU3|SWI5 MSMS UPN46_class_I_Rep_3 1 538.3084716796875 2 538.309606 1074.60466 NaN NaN NaN NaN NaN NaN NaN 86.819 1 86.819 86.319 87.319 0 0 0 0 0.53105 1 20770 20770 1.8442 0 1 + 31830 32064 20243 20254 36627 36627 0.07034191897128039 PSRLLRMP 8 Unmodified _PSRLLRMP_ 0 0 0 L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2859191894531 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 42.08 1 45.721 45.221 46.221 3.6415 0 0 0 0.40404 1 7671 7671 5.2307 1.2863 1 31831 15101 20244 20255 36628 36628 0.07341830390532778 PSRNLHVF 8 Unmodified _PSRNLHVF_ 0 0 0 MER21B_dup2698|chr21:44084548-44085323:-|1.875761120328785|0.3640116918345348|2.37|151.0|44|3|anti-sense MER21B_dup2698|chr21:44084548-44085323:-|1.875761120328785|0.3640116918345348|2.37|151.0|44|3|anti-sense MER21B_dup2698|chr21:44084548-44085323:-|1.875761120328785|0.3640116918345348|2.37|151.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 485.2557678222656 2 485.266876 968.519199 NaN NaN NaN NaN NaN NaN NaN 72.494 1 72.494 71.994 72.994 0 0 0 0 0.39167 1 16760 16760 11.114 4.3913 1 31832 15870 20245 20256 36629 36629 0.0336802671146188 PSRRRPRHRVP 11 Unmodified _PSRRRPRHRVP_ 0 0 0 ENST00000371933.7_1_1:47184401-47184626:-|nuORF ENST00000371933.7_1_1:47184401-47184626:-|nuORF ENST00000371933.7_1_1:47184401-47184626:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 471.95184326171875 3 471.951865 1412.83377 0.084756 4.0001E-05 0.16953 8.0011E-05 0.25429 0.00012001 471.95184247904126 98.862 0.43095 102.47 102.44 102.87 3.6065 95 55 2 0 0 0 0.68024 1 23923 23923 0.50596 0.50596 1 618550 31833 6395 20246 20257 36630 36630 0.14386203913704776 PSRTFLFL 8 Unmodified _PSRTFLFL_ 0 0 0 Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|136|2|anti-sense Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|136|2|anti-sense Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|136|2|anti-sense MSMS UPN47_class_I_Rep_2 3 490.7810363769531 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 35.072 1 38.497 37.997 38.997 3.4253 0 0 0 0.40604 1 6420 6420 2.5775 0 1 31834 33080 20247 20258 36631 36631 0.05850965656793505 PSRWFRLISK 10 Unmodified _PSRWFRLISK_ 0 0 0 REV__L1M4a1_dup281|chr2:26377644-26378215:-|1.1669281258896425|0.0652979138233071|4.16|151.0|45|3|anti-sense REV__L1M4a1_dup281|chr2:26377644-26378215:-|1.1669281258896425|0.0652979138233071|4.16|151.0|45|3|anti-sense MSMS UPN46_class_I_Rep_3 1 645.3779296875 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 14.915 1 14.915 14.415 15.415 0 0 0 0 0.53105 1 752 752 1.4819 0 1 + 31835 24488 20248 20259 36632 36632 0.10760466687929693 PSRWFRLISK 10 Unmodified _PSRWFRLISK_ 0 0 0 REV__L1M4a1_dup281|chr2:26377644-26378215:-|1.1669281258896425|0.0652979138233071|4.16|151.0|45|3|anti-sense REV__L1M4a1_dup281|chr2:26377644-26378215:-|1.1669281258896425|0.0652979138233071|4.16|151.0|45|3|anti-sense MSMS UPN46_class_I_Rep_3 1 645.3782348632812 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 16.483 1 16.483 15.983 16.983 0 0 0 0 0.53105 1 1140 1140 1.4819 0 1 + 31836 24488 20248 20259 36633 36633 0.10760466687929693 PSRWKAKK 8 Unmodified _PSRWKAKK_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|154|3|sense;L1PA8A_dup2436|chr22:46817264-46822815:-|4.477623319494518|0.0656514705541751|6.09|151.0|14|1|sense;L1PA6_dup1254|chr3:142135407-142141502:-|5.131494547787043|0.0894150822744212|5.84|151.0|94|2|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|154|3|sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|154|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 500.7826232910156 2 500.806168 999.597784 -0.18309 -9.1694E-05 0.92521 0.00046335 0.74211 0.00037166 500.8062303818715 32.428 0.040257 35.883 35.851 35.891 3.4547 4 2 2 0 0 0 0.82752 1 5615 5615 0.6015 0.6015 1 18912 31837 14857 20249 20260 36634 36634 0.09796879016550974 PSSAWGLFL 9 Unmodified _PSSAWGLFL_ 0 0 0 REV__L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|100|2|anti-sense REV__L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|100|2|anti-sense MSMS UPN47_class_I_Rep_3 4 489.27032470703125 2 489.258185 976.501818 NaN NaN NaN NaN NaN NaN NaN 36.311 1 39.566 39.066 40.066 3.2547 0 0 0 0.39326 1 6831 6831 2.3027 0 1 + 31838 28521 20250 20261 36635 36635 0.01262686385791767 PSSDSSQSL 9 Unmodified _PSSDSSQSL_ 0 0 0 REV__ENSG00000136628|ENST00000366923|EPRS1 REV__ENSG00000136628|ENST00000366923|EPRS1 MSMS UPN47_class_I_Rep_3 4 454.2034606933594 2 454.203804 906.393055 NaN NaN NaN NaN NaN NaN NaN 30.287 1 33.599 33.099 34.099 3.3116 0 0 0 0.37891 1 5007 5007 5.7319 0 1 + 31839 19193 20251 20262 36636 36636 -0.06388569375133102 PSSLHYKK 8 Unmodified _PSSLHYKK_ 0 0 0 L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|88|3|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|88|3|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|88|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.268798828125 2 480.269084 958.523616 0.25051 0.00012031 -0.267 -0.00012823 -0.016487 -7.918E-06 480.26882974303 55.548 0.80745 58.859 58.491 59.298 3.3102 105 46 3 0 0 0 0.82752 1 12743 12743 4.756 0 1 260930 31840 13117 20252 20263 36637 36637 0.042694911343687636 PSSLVPYDCSM 11 Unmodified _PSSLVPYDCSM_ 0 0 0 ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|1|intron;ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|7|intron;ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|6|intron;ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|5|intron;nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|4|intron;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|1|intron ENSG00000124782.20,RREB1,chr6,+,I11.1,7219092,7226466|42|14.52|1|intron MSMS UPN47_class_I_Rep_1 2 599.7621459960938 2 599.759575 1197.5046 NaN NaN NaN NaN NaN NaN NaN 116.21 1 119.81 119.31 120.31 3.5943 0 0 0 0.38417 1 28773 28773 1.3295 0 1 31841 2486 20253 20264 36638 36638 -0.08625594333875597 PSSWEYSCK 9 Unmodified _PSSWEYSCK_ 0 0 0 AluJo_dup45251|chr10:103179565-103179729:+|1.392680159102239|0.1278706334637345|3.45|151.0|14|3|anti-sense AluJo_dup45251|chr10:103179565-103179729:+|1.392680159102239|0.1278706334637345|3.45|151.0|14|3|anti-sense AluJo_dup45251|chr10:103179565-103179729:+|1.392680159102239|0.1278706334637345|3.45|151.0|14|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7330932617188 2 543.731674 1085.4488 NaN NaN NaN NaN NaN NaN NaN 32.879 1 36.334 35.834 36.834 3.4547 0 0 0 0.39598 1 5754 5754 1.6526 0 1 31842 112 20254 20265 36639 36639 -0.09051059459170574 PSTMLLLLKIH 11 Unmodified _PSTMLLLLKIH_ 0 0 0 REV__ENST00000357430.7_1_2:223806358-223806715:+|nuORF REV__ENST00000357430.7_1_2:223806358-223806715:+|nuORF MSMS UPN48_class_I_Rep_2 6 422.59234619140625 3 422.593181 1264.75771 NaN NaN NaN NaN NaN NaN NaN 51.157 1 54.825 54.325 55.325 3.6679 0 0 0 0.38417 1 10517 10517 1.3296 0 1 + 31843 21877 20255 20266 36640 36640 0.13592626178729006 PSTVDAAFLW 10 Unmodified _PSTVDAAFLW_ 0 0 0 CON__Q3SZV7 CON__Q3SZV7 CON__Q3SZV7 MSMS UPN47_class_I_Rep_3 4 553.7962036132812 2 553.779482 1105.54441 NaN NaN NaN NaN NaN NaN NaN 58.937 1 62.103 61.603 62.603 3.1658 0 0 0 0.53105 1 13733 13733 3.5965 0.70727 1 + 31844 653 20256 20267 36641 36641 -0.004139632766509749 PSTVPLVVA 9 Unmodified _PSTVPLVVA_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.7681884765625 2 441.768386 881.522219 -0.077464 -3.4221E-05 -0.089571 -3.957E-05 -0.16703 -7.3791E-05 441.7682019061066 96.721 0.98116 100.2 99.85 100.83 3.4791 304 141 3 0 0 0 0.3898 1 23766 23766 8.5933 3.8373 1 3612000 31845 9648 20257 20268 36642 36642 0.07671857045613706 PSTVPLVVA 9 Unmodified _PSTVPLVVA_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|108|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.7682189941406 2 441.768386 881.522219 -0.27065 -0.00011956 0.023906 1.0561E-05 -0.24674 -0.000109 441.76827377283024 96.871 0.97051 100.28 99.84 100.81 3.414 291 132 3 0 0 0 0.3898 2 23960 23960;24023 8.5933 3.8373 1 3886400 31846 9648 20257 20268 36643;36644 36643 0.07671857045613706 PSTVPVLVA 9 Unmodified _PSTVPVLVA_ 0 0 0 L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.7681884765625 2 441.768386 881.522219 -0.077464 -3.4221E-05 -0.089571 -3.957E-05 -0.16703 -7.3791E-05 441.7682019061066 96.721 0.98116 100.2 99.85 100.83 3.4791 304 141 3 0 0 0 0.45688 2 23714 23714;23825 4.756 0 1 3612000 31847 9635 20258 20269 36645;36646 36645 0.07671857045602337 PSTVPVLVA 9 Unmodified _PSTVPVLVA_ 0 0 0 L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.7681884765625 2 441.768386 881.522219 -0.026516 -1.1714E-05 -0.10111 -4.4666E-05 -0.12762 -5.638E-05 441.7681934738912 96.591 0.94635 100.2 99.774 100.72 3.6124 232 113 3 0 0 0 0.45688 3 23223 23223;23328;23364 4.756 0 1 2513200 31848 9635 20258 20269 36647;36648;36649 36647 0.07671857045602337 PSTVPVLVA 9 Unmodified _PSTVPVLVA_ 0 0 0 L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.76824951171875 2 441.768386 881.522219 0.12681 5.6021E-05 -0.22993 -0.00010158 -0.10312 -4.5554E-05 441.7681310057335 96.391 0.88155 100.17 99.809 100.69 3.7804 275 115 3 0 0 0 0.45688 3 22856 22856;22917;22947 4.756 0 1 2481000 31849 9635 20258 20269 36650;36651;36652 36650 0.07671857045602337 PSTVPVLVA 9 Unmodified _PSTVPVLVA_ 0 0 0 L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense L1MA3_dup813|chr2:57927546-57930608:-|1.6366833527570357|0.0138824259959913|6.88|151.0|18|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.7681579589844 2 441.768386 881.522219 0.1498 6.6177E-05 -0.32169 -0.00014211 -0.17189 -7.5938E-05 441.76810661522427 96.417 0.84752 100.32 99.933 100.78 3.9084 284 116 3 0 0 0 0.45688 2 22838 22838;22867 4.756 0 1 2537100 31850 9635 20258 20269 36653;36654 36653 0.07671857045602337 PSTVVGPLI 9 Unmodified _PSTVVGPLI_ 0 0 0 REV__ENSG00000177992|ENST00000325643|SPATA31E1 REV__ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MSMS UPN47_class_I_Rep_3 4 441.7680969238281 2 441.768386 881.522219 -0.27065 -0.00011956 0.023906 1.0561E-05 -0.24674 -0.000109 441.76827377283024 96.871 0.97051 100.28 99.84 100.81 3.414 291 132 3 0 0 0 0.45688 1 24051 24051 4.756 0 1 3886400 + 31851 20635 20259 20270 36655 36655 0.07671857045625075 PSTYNFGMY 9 Unmodified _PSTYNFGMY_ 0 0 0 ENSG00000153207.16,AHCTF1,chr1,-,I11.1,246899513,246900064|25|5.1|2|intron;ENSG00000153207.16,AHCTF1,chr1,-,I11.1,246899513,246900064|25|5.1|4|intron;ENSG00000153207.16,AHCTF1,chr1,-,I11.1,246899513,246900064|25|5.1|3|intron;ENSG00000153207.16,AHCTF1,chr1,-,I11.1,246899513,246900064|25|5.1|5|intron ENSG00000153207.16,AHCTF1,chr1,-,I11.1,246899513,246900064|25|5.1|2|intron ENSG00000153207.16,AHCTF1,chr1,-,I11.1,246899513,246900064|25|5.1|2|intron MSMS UPN46_class_I_Rep_3 1 540.2283325195312 2 540.228768 1078.44298 NaN NaN NaN NaN NaN NaN NaN 49.587 1 49.587 49.087 50.087 0 0 0 0 0.39428 1 10420 10420 2.0598 0 1 31852 3642 20260 20271 36656 36656 -0.0931015797082182 PSVIGLKMV 9 Unmodified _PSVIGLKMV_ 0 0 0 REV__L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|74|2|anti-sense REV__L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|74|2|anti-sense MSMS UPN46_class_I_Rep_3 1 472.2875671386719 2 472.285889 942.557224 NaN NaN NaN NaN NaN NaN NaN 90.549 1 90.549 90.049 91.049 0 0 0 0 0.38478 1 21840 21840 4.3292 0 1 + 31853 26355 20261 20272 36657 36657 0.08364776581925071 PSVKTLRCS 9 Unmodified _PSVKTLRCS_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|129|1|anti-sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|129|1|anti-sense MSMS UPN48_class_I_Rep_1 5 495.7864685058594 2 495.773677 989.5328 NaN NaN NaN NaN NaN NaN NaN 42.478 1 45.986 45.486 46.486 3.5079 0 0 0 0.32573 1 7861 7861 9.3831 1.473 1 + 31854 25024 20262 20273 36658 36658 0.037615164284147795 PSVLPPHL 8 Unmodified _PSVLPPHL_ 0 0 0 REV__HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|67|3|sense REV__HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|67|3|sense MSMS UPN48_class_I_Rep_3 7 430.25616455078125 2 430.255446 858.496338 NaN NaN NaN NaN NaN NaN NaN 108.89 1 112.57 112.07 113.07 3.6751 0 0 0 0.40404 1 25826 25826 5.2307 0 1 + 31855 23656 20263 20274 36659 36659 0.06143007594005212 PSVQWTRDSR 10 Unmodified _PSVQWTRDSR_ 0 0 0 LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|29|3|sense LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|29|3|sense LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|29|3|sense MSMS UPN48_class_I_Rep_3 7 616.385009765625 2 616.312543 1230.61053 NaN NaN NaN NaN NaN NaN NaN 67.642 1 71.149 70.649 71.649 3.5077 0 0 0 0.53105 1 15457 15457 8.1555 0.8663 1 31856 15557 20264 20275 36660 36660 0.0044524561810703744 PSVSSLYQVY 10 Unmodified _PSVSSLYQVY_ 0 0 0 ENST00000216268.5_1_22:50280822-50281059:+|nuORF ENST00000216268.5_1_22:50280822-50281059:+|nuORF ENST00000216268.5_1_22:50280822-50281059:+|nuORF MSMS UPN47_class_I_Rep_3 4 571.7907104492188 2 571.790047 1141.56554 NaN NaN NaN NaN NaN NaN NaN 70.532 1 73.743 73.243 74.243 3.2113 0 0 0 0.53105 1 17259 17259 3.2813 0.28607 1 31857 5862 20265 20276 36661 36661 0.00042002032250820776 PSVYYKLN 8 Unmodified _PSVYYKLN_ 0 0 0 REV__ENST00000584308.1_1_17:37583876-37587452:-|nuORF REV__ENST00000584308.1_1_17:37583876-37587452:-|nuORF MSMS UPN47_class_I_Rep_3 4 492.26220703125 2 492.263468 982.512382 NaN NaN NaN NaN NaN NaN NaN 34.454 1 37.718 37.218 38.218 3.2639 0 0 0 0.40746 1 6267 6267 0.69038 0 1 + 31858 18837 20266 20277 36662 36662 0.020426690402246095 PSWNRVDEGVS 11 Unmodified _PSWNRVDEGVS_ 0 0 0 REV__L1M4_dup13574|chr11:3126012-3126309:+|1.5714630896241404|0.1273361944108258|3.63|151.0|1|1|sense REV__L1M4_dup13574|chr11:3126012-3126309:+|1.5714630896241404|0.1273361944108258|3.63|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 623.2937622070312 2 623.296559 1244.57856 NaN NaN NaN NaN NaN NaN NaN 58.367 1 61.854 61.354 62.354 3.487 0 0 0 0.38417 1 12729 12729 2.2828 0.63015 1 + 31859 24366 20267 20278 36663 36663 -0.03394166855673575 PSWRLWIRR 9 Unmodified _PSWRLWIRR_ 0 0 0 REV__ENST00000447600.1_1_1:11159806-11161858:+|nuORF REV__ENST00000447600.1_1_1:11159806-11161858:+|nuORF MSMS UPN47_class_I_Rep_3 4 635.3700561523438 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 95.109 1 98.518 98.018 99.018 3.4095 0 0 0 0.4007 1 23651 23651 0.52476 0 1 + 31860 22372 20268 20279 36664 36664 0.10183019610576594 PSYILSQRFF 10 Unmodified _PSYILSQRFF_ 0 0 0 L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|156|2|anti-sense L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|156|2|anti-sense L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|156|2|anti-sense MSMS UPN48_class_I_Rep_1 5 629.3367309570312 2 629.334956 1256.65536 NaN NaN NaN NaN NaN NaN NaN 53.381 1 56.901 56.401 57.401 3.5192 0 0 0 0.53105 1 11198 11198 1.4819 0.15237 1 31861 12488 20269 20280 36665 36665 0.03729676431453299 PTAEVSLFTIE 11 Unmodified _PTAEVSLFTIE_ 0 0 0 REV__Tigger1_dup198|chr1:51377284-51377895:+|2.196281313018732|0.029900349588115|6.2|151.0|26|1|anti-sense REV__Tigger1_dup198|chr1:51377284-51377895:+|2.196281313018732|0.029900349588115|6.2|151.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 603.8195190429688 2 603.816261 1205.61797 NaN NaN NaN NaN NaN NaN NaN 73.76 1 73.76 73.26 74.26 0 0 0 0 0.38417 1 17110 17110 1.1933 0 1 + 31862 32387 20270 20281 36666 36666 0.023385403751944978 PTASRLHLY 9 Unmodified _PTASRLHLY_ 0 0 0 L1P2_dup1129|chr10:72395314-72399147:+|2.617128255979289|0.0922502550301311|4.83|151.0|33|2|sense L1P2_dup1129|chr10:72395314-72399147:+|2.617128255979289|0.0922502550301311|4.83|151.0|33|2|sense L1P2_dup1129|chr10:72395314-72399147:+|2.617128255979289|0.0922502550301311|4.83|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.7791748046875 2 529.293091 1056.57163 0.32499 0.00017202 4.2625 0.0022561 4.5875 0.0024281 529.7952357290845 56.828 0.061207 60.285 60.243 60.304 3.4572 6 4 2 0 0 0 0.40174 1 13008 13008 7.9102 1.187 1 56819 31863 13479 20271 20282 36667 36667 0.04560565054453036 PTDDCCPA 8 Unmodified _PTDDCCPA_ 0 0 0 nc|ENSG802|Q902F9|HERVK_113_env nc|ENSG802|Q902F9|HERVK_113_env nc|ENSG802|Q902F9|HERVK_113_env MSMS UPN46_class_I_Rep_3 1 411.24359130859375 2 411.143846 820.27314 NaN NaN NaN NaN NaN NaN NaN 95.305 1 95.305 94.805 95.805 0 0 0 0 0.40746 1 23133 23133 0.69038 0 1 31864 16865 20272 20283 36668 36668 -0.14418597244912235 PTDILLVTLE 10 Unmodified _PTDILLVTLE_ 0 0 0 REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|78|1|anti-sense REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 557.3133544921875 2 557.323722 1112.63289 NaN NaN NaN NaN NaN NaN NaN 57.266 1 60.76 60.26 61.26 3.4942 0 0 0 0.53105 1 12394 12394 14.838 4.0143 1 + 31865 17415 20273 20284 36669 36669 0.0810803224319443 PTDILVTCR 9 Unmodified _PTDILVTCR_ 0 0 0 REV__L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|49|3|sense REV__L1PA16_dup3029|chr4:6818465-6820271:+|1.2369705116800491|0.0513929148683471|4.59|151.0|49|3|sense MSMS UPN47_class_I_Rep_3 4 509.2841796875 2 509.273509 1016.53247 NaN NaN NaN NaN NaN NaN NaN 39.825 1 43.062 42.562 43.562 3.2372 0 0 0 0.29868 1 7912 7912 10.824 2.2306 1 + 31866 29370 20274 20285 36670 36670 0.024860967085373886 PTDPKVVVY 9 Unmodified _PTDPKVVVY_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS UPN47_class_I_Rep_1 2 509.2843017578125 2 509.2844 1016.55425 -0.18087 -9.2112E-05 -0.21448 -0.00010923 -0.39534 -0.00020134 509.2842719831833 39.424 1.1461 43.091 42.733 43.879 3.6668 192 82 3 0 0 0 0.053261 3 7637 7637;7759;7797 47.594 28.337 1 835280 31867 2007 20275 20286 36671;36672;36673 36671 0.046632247287675455 PTDPKVVVY 9 Unmodified _PTDPKVVVY_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS UPN47_class_I_Rep_2 3 509.2843933105469 2 509.2844 1016.55425 -0.25625 -0.0001305 -0.095594 -4.8685E-05 -0.35184 -0.00017919 509.2843248106492 39.748 1.2223 43.12 42.749 43.972 3.3721 205 80 4 0 0 0 0.022868 2 7797 7758;7797 61.602 21.645 1 700390 31868 2007 20275 20286 36674;36675 36675 0.046632247287675455 PTDPKVVVY 9 Unmodified _PTDPKVVVY_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS UPN47_class_I_Rep_3 4 509.2841796875 2 509.2844 1016.55425 -0.21724 -0.00011064 -0.23906 -0.00012175 -0.4563 -0.00023239 509.28426127274787 39.861 1.3195 43.098 42.69 44.009 3.2372 215 87 4 0 0 0 0.0058741 5 7951 7835;7872;7951;7991;8035 76.825 19.353 1 635110 31869 2007 20275 20286 36676;36677;36678;36679;36680 36678 0.046632247287675455 PTDWKVGSK 9 Unmodified _PTDWKVGSK_ 0 0 0 REV__ENSG00000206560.11,ANKRD28,chr3,-,I6.1,15756549,15766233|47|22.51|1|intron REV__ENSG00000206560.11,ANKRD28,chr3,-,I6.1,15756549,15766233|47|22.51|1|intron MSMS UPN47_class_I_Rep_2 3 509.2842102050781 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 40.006 1 43.378 42.878 43.878 3.3712 0 0 0 0.29868 1 7919 7919 10.824 0 1 + 31870 21234 20276 20287 36681 36681 0.021491699262014663 PTFFLCGKYV 10 Unmodified _PTFFLCGKYV_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|217|1|anti-sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|217|1|anti-sense MSMS UPN48_class_I_Rep_2 6 587.80224609375 2 587.801903 1173.58925 NaN NaN NaN NaN NaN NaN NaN 31.37 1 35.011 34.511 35.511 3.641 0 0 0 0.53105 1 4710 4710 1.4819 0.28856 1 + 31871 24778 20277 20288 36682 36682 0.009401442650414538 PTFSHNAK 8 Unmodified _PTFSHNAK_ 0 0 0 REV__ENSG00000145391|ENST00000274031|SETD7 REV__ENSG00000145391|ENST00000274031|SETD7 MSMS UPN48_class_I_Rep_3 7 451.23065185546875 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 99.554 1 103.44 102.94 103.94 3.8839 0 0 0 0.40643 1 23575 23575 2.0598 0 1 + 31872 19513 20278 20289 36683 36683 -0.008839414508656773 PTGHMSKLMDS 11 Unmodified _PTGHMSKLMDS_ 0 0 0 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 MSMS UPN47_class_I_Rep_3 4 602.2808837890625 2 602.278466 1202.54238 NaN NaN NaN NaN NaN NaN NaN 33.463 1 36.738 36.238 37.238 3.2748 0 0 0 0.38417 1 5968 5968 2.2828 0.43854 1 + 31873 20594 20279 20290 36684 36684 -0.0507908334836884 PTGKRELLL 9 Unmodified _PTGKRELLL_ 0 0 0 MLT2B4_dup950|chr3:187002935-187003460:-|1.1165278885638177|0.0310443232944034|5.17|151.0|3|1|sense MLT2B4_dup950|chr3:187002935-187003460:-|1.1165278885638177|0.0310443232944034|5.17|151.0|3|1|sense MLT2B4_dup950|chr3:187002935-187003460:-|1.1165278885638177|0.0310443232944034|5.17|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 513.31640625 2 513.818941 1025.62333 0.35417 0.00018198 0.42423 0.00021798 0.7784 0.00039996 513.8189743098745 57.932 0.24345 61.419 61.338 61.582 3.487 21 15 2 0 0 0 0.12408 1 12573 12573 2.9952 2.9952 1 81841 31874 16516 20280 20291 36685 36685 0.11154308748336916 PTGPLAQK 8 Unmodified _PTGPLAQK_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MSMS UPN46_class_I_Rep_3 1 406.2386169433594 2 406.237253 810.459953 NaN NaN NaN NaN NaN NaN NaN 42.145 1 42.145 41.645 42.645 0 0 0 0 0.40625 1 8323 8323 2.3027 0 1 31875 3660 20281 20292 36686 36686 0.047141306972775965 PTHHMHTCV 9 Unmodified _PTHHMHTCV_ 0 0 0 L1MA5A_dup376|chr2:61433657-61435021:+|1.0737340178107877|0.0146498187716663|6.2|151.0|39|3|sense L1MA5A_dup376|chr2:61433657-61435021:+|1.0737340178107877|0.0146498187716663|6.2|151.0|39|3|sense L1MA5A_dup376|chr2:61433657-61435021:+|1.0737340178107877|0.0146498187716663|6.2|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 531.7340698242188 2 531.734029 1061.4535 NaN NaN NaN NaN NaN NaN NaN 28.61 1 28.61 28.11 29.11 0 0 0 0 0.38478 1 4416 4416 4.3292 0 1 31876 9949 20282 20293 36687 36687 -0.074764537973806 PTIADSAVWTY 11 Unmodified _PTIADSAVWTY_ 0 0 0 MLT1N2_dup4783|chr16:23947846-23948148:+|1.1301314651506795|0.0034872345638778|8.34|151.0|11|1|anti-sense MLT1N2_dup4783|chr16:23947846-23948148:+|1.1301314651506795|0.0034872345638778|8.34|151.0|11|1|anti-sense MLT1N2_dup4783|chr16:23947846-23948148:+|1.1301314651506795|0.0034872345638778|8.34|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 612.3015747070312 2 612.300778 1222.587 NaN NaN NaN NaN NaN NaN NaN 57.679 1 61.21 60.71 61.71 3.5317 0 0 0 0.38417 1 12430 12430 4.897 0.95262 1 31877 16492 20283 20294 36688 36688 -0.015386129390662973 PTIEDSYTKQC 11 Unmodified _PTIEDSYTKQC_ 0 0 0 nc|ENSG00000133818|P62070-3|RRAS2;ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2 nc|ENSG00000133818|P62070-3|RRAS2 nc|ENSG00000133818|P62070-3|RRAS2 MSMS UPN47_class_I_Rep_2 3 642.7928466796875 2 642.79246 1283.57037 NaN NaN NaN NaN NaN NaN NaN 49.867 1 53.21 52.71 53.71 3.3431 0 0 0 0.38417 1 10911 10911 1.3295 0 1 31878 2816 20284 20295 36689 36689 -0.06007481887309041 PTITLQQSL 9 Unmodified _PTITLQQSL_ 0 0 0 REV__ENSG00000105866|ENST00000222584|SP4 REV__ENSG00000105866|ENST00000222584|SP4 MSMS UPN48_class_I_Rep_3 7 500.7860412597656 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 39.561 1 43.217 42.717 43.717 3.6557 0 0 0 0.38639 1 6935 6935 3.9444 0 1 + 31879 18308 20285 20296 36690 36690 0.060263232404167866 PTKAARQK 8 Unmodified _PTKAARQK_ 0 0 0 ENSG00000183921|ENST00000602312|SDR42E2 ENSG00000183921|ENST00000602312|SDR42E2 ENSG00000183921|ENST00000602312|SDR42E2 MULTI-MSMS UPN46_class_I_Rep_3 1 450.2745666503906 2 450.274701 898.534849 0.18588 8.3696E-05 -0.088848 -4.0006E-05 0.09703 4.369E-05 450.27462603411817 88.465 0.20375 88.465 88.395 88.599 0 43 21 3 0 0 0 0.82752 1 21257 21257 4.756 0.81161 1 481510 31880 5029 20286 20297 36691 36691 0.08152313228515595 PTKDKTEKF 9 Unmodified _PTKDKTEKF_ 0 0 0 REV__L1PB3_dup465|chr2:230192744-230193722:-|1.5397369776129224|0.0926108566505983|4.06|149.0|54|2|anti-sense REV__L1PB3_dup465|chr2:230192744-230193722:-|1.5397369776129224|0.0926108566505983|4.06|149.0|54|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 547.332763671875 2 547.298039 1092.58152 0.53272 0.00029156 -0.039327 -2.1524E-05 0.4934 0.00027004 547.2980982764751 63.104 0.14171 66.578 66.514 66.656 3.4738 15 10 3 0 0 0 0.12354 1 14179 14179 3.5965 0 1 59592 + 31881 30567 20287 20298 36692 36692 0.038937082691290925 PTKDKTEKF 9 Unmodified _PTKDKTEKF_ 0 0 0 REV__L1PB3_dup465|chr2:230192744-230193722:-|1.5397369776129224|0.0926108566505983|4.06|149.0|54|2|anti-sense REV__L1PB3_dup465|chr2:230192744-230193722:-|1.5397369776129224|0.0926108566505983|4.06|149.0|54|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 547.298039 1092.58152 0.39864 0.00021817 -1.2345 -0.00067564 -0.83586 -0.00045746 547.7981524727983 63.272 0.041702 66.528 66.496 66.537 3.2558 -0.02502 -0.0012305 NaN 3.5965 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 38692 + 31882 30567 20287 20298 0.038937082691290925 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 451.9328918457031 3 451.93208 1352.77441 0.19038 8.604E-05 1.1332 0.00051215 1.3236 0.00059819 451.9324920284986 93.656 0.32181 93.656 93.505 93.827 0 51 31 3 0 0 0 0.6724 1 22703 22703 1.2148 0.588 1 388370 + 31883 24297 20288 20299 36693 36693 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN46_class_I_Rep_3 1 451.9327392578125 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 95.376 1 95.376 94.876 95.876 0 0 0 0 0.38417 1 23154 23154 1.0136 0 1 + 31884 24297 20288 20299 36694 36694 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.9326171875 3 451.93208 1352.77441 0.16075 7.2646E-05 0.74624 0.00033725 0.90699 0.0004099 451.9323562779482 90.285 0.27306 93.975 93.797 94.07 3.6899 52 37 2 0 0 0 0.6724 1 22534 22534 1.2148 0.4383 1 96870 + 31885 24297 20288 20299 36695 36695 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.93328857421875 3 451.93208 1352.77441 0.17075 7.7167E-05 1.1243 0.00050811 1.2951 0.00058528 451.93259024839887 91.82 0.29845 95.526 95.473 95.772 3.7053 61 37 2 0 0 0 0.6724 1 22885 22885 1.2148 0.70888 1 263800 + 31886 24297 20288 20299 36696 36696 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN47_class_I_Rep_1 2 451.9325256347656 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 92.377 1 96.098 95.598 96.598 3.7209 0 0 0 0.38417 1 23021 23021 1.2148 0.51716 1 + 31887 24297 20288 20299 36697 36697 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN47_class_I_Rep_2 3 451.9327087402344 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 92.458 1 95.923 95.423 96.423 3.4652 0 0 0 0.38417 1 22854 22854 2.6312 1.4164 1 + 31888 24297 20288 20299 36698 36698 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN47_class_I_Rep_3 4 451.9323425292969 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 90.156 1 93.553 93.053 94.053 3.3976 0 0 0 0.38417 1 22597 22597 1.2148 0.4383 1 + 31889 24297 20288 20299 36699 36699 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN48_class_I_Rep_1 5 451.93280029296875 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 88.934 1 92.557 92.057 93.057 3.6229 0 0 0 0.38417 1 21341 21341 0.40827 0.24894 1 + 31890 24297 20288 20299 36700 36700 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN48_class_I_Rep_1 5 451.9328308105469 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 92.6 1 96.224 95.724 96.724 3.624 0 0 0 0.38417 1 22252 22252 2.2527 0.92309 1 + 31891 24297 20288 20299 36701 36701 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN48_class_I_Rep_1 5 451.9318542480469 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 92.719 1 96.343 95.843 96.843 3.624 0 0 0 0.38417 1 22279 22279 1.2148 0 1 + 31892 24297 20288 20299 36702 36702 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN48_class_I_Rep_2 6 451.93310546875 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 91.859 1 95.622 95.122 96.122 3.7629 0 0 0 0.38417 1 21873 21873 1.0136 0.31591 1 + 31893 24297 20288 20299 36703 36703 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN48_class_I_Rep_3 7 451.9326171875 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 91.524 1 95.387 94.887 95.887 3.8634 0 0 0 0.38417 1 21705 21705 2.2527 0.51045 1 + 31894 24297 20288 20299 36704 36704 0.11213450336299502 PTKEFILFLFV 11 Unmodified _PTKEFILFLFV_ 0 0 0 REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense REV__L1M3_dup3230|chr9:21880403-21882049:+|1.2928564203526876|0.0424240009357386|4.93|150.0|98|3|anti-sense MSMS UPN48_class_I_Rep_3 7 451.9332580566406 3 451.93208 1352.77441 NaN NaN NaN NaN NaN NaN NaN 91.666 1 95.53 95.03 96.03 3.8634 0 0 0 0.38417 1 21739 21739 2.2527 1.2392 1 + 31895 24297 20288 20299 36705 36705 0.11213450336299502 PTKFSKKFLR 10 Unmodified _PTKFSKKFLR_ 0 0 0 L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|174|3|anti-sense L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|174|3|anti-sense L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|174|3|anti-sense MSMS UPN48_class_I_Rep_3 7 417.9220886230469 3 417.923919 1250.74993 NaN NaN NaN NaN NaN NaN NaN 98.281 1 102.18 101.68 102.68 3.9022 0 0 0 0.53105 1 23292 23292 1.7423 0 1 31896 12195 20289 20300 36706 36706 0.1345823497345009 PTKGGARR 8 Unmodified _PTKGGARR_ 0 0 0 REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|15|2|sense REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|15|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 421.7512512207031 2 421.751393 841.488233 0.078166 3.2967E-05 -0.13852 -5.8421E-05 -0.060354 -2.5454E-05 421.75129288766556 80.673 0.5966 84.318 84.09 84.686 3.6446 125 82 2 0 0 0 0.72333 1 19188 19188 2.0598 1.3694 1 1819300 + 31897 30669 20290 20301 36707 36707 0.061148733972345326 PTKGLRLPQN 10 Unmodified _PTKGLRLPQN_ 0 0 0 L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|26|1|sense L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|26|1|sense L1PA5_dup9586|chr14:39353577-39359700:-|1.557808383337616|0.0520543283192841|4.9|150.0|26|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 561.9808959960938 2 562.332747 1122.65094 0.44177 0.00024842 3.5075 0.0019724 3.9493 0.0022208 562.3345374165251 110.49 0.028656 114.12 114.1 114.13 3.6326 6 3 2 0 0 0 0.84575 1 26818 26818 3.2813 0.54611 1 34686 31898 14538 20291 20302 36708 36708 0.09452212008568495 PTKGPVRGQ 9 Unmodified _PTKGPVRGQ_ 0 0 0 REV__LTR28B_dup246|chr17:80317514-80318395:-|1.0598824975008363|0.3690769210161706|1.52|151.0|18|3|sense REV__LTR28B_dup246|chr17:80317514-80318395:-|1.0598824975008363|0.3690769210161706|1.52|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 470.27215576171875 2 470.272158 938.529764 0.15321 7.2049E-05 -0.19623 -9.2282E-05 -0.043023 -2.0233E-05 470.2719451040926 83.284 0.66632 86.695 86.415 87.081 3.4116 175 81 3 0 0 0 0.42249 1 20770 20770 6.7232 1.9672 1 289840 + 31899 30895 20292 20303 36709 36709 0.05804009365908769 PTKHLHKPAAR 11 Unmodified _PTKHLHKPAAR_ 0 0 0 REV__ENSG00000198844|ENST00000361926|ARHGEF15 REV__ENSG00000198844|ENST00000361926|ARHGEF15 MSMS UPN46_class_I_Rep_3 1 628.3742065429688 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 110.17 1 110.17 109.67 110.67 0 0 0 0 0.38417 1 27121 27121 2.7352 0.23671 1 + 31900 21155 20293 20304 36710 36710 0.11374698402391914 PTKIKKDKAV 10 Unmodified _PTKIKKDKAV_ 0 0 0 L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 564.3792724609375 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 108.27 1 111.94 111.44 112.44 3.6746 0 0 0 0.53105 1 25659 25659 5.7319 0 1 31901 14942 20294 20305 36711 36711 0.14910839845219925 PTKIKKDKAV 10 Unmodified _PTKIKKDKAV_ 0 0 0 L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 564.3794555664062 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 108.4 1 112.07 111.57 112.57 3.6746 0 0 0 0.53105 1 25709 25709 2.9952 0 1 31902 14942 20294 20305 36712 36712 0.14910839845219925 PTKIKKDKAV 10 Unmodified _PTKIKKDKAV_ 0 0 0 L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 564.6766357421875 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 107.28 1 110.96 110.46 111.46 3.6813 0 0 0 0.53105 1 25290 25290 5.7319 0 1 31903 14942 20294 20305 36713 36713 0.14910839845219925 PTKIKKDKAV 10 Unmodified _PTKIKKDKAV_ 0 0 0 L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 564.37939453125 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 108.26 1 111.94 111.44 112.44 3.6813 0 0 0 0.53105 1 25598 25598 5.7319 0 1 31904 14942 20294 20305 36714 36714 0.14910839845219925 PTKIMPKK 8 Unmodified _PTKIMPKK_ 0 0 0 ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE MSMS UPN46_class_I_Rep_3 1 472.28253173828125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 97.887 1 97.887 97.387 98.387 0 0 0 0 0.4044 1 23829 23829 4.756 0.42677 1 31905 3097 20295 20306 36715 36715 0.1000848281881872 PTKIMPKK 8 Unmodified _PTKIMPKK_ 0 0 0 ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE MSMS UPN47_class_I_Rep_3 4 471.7951965332031 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 86.082 1 89.454 88.954 89.954 3.3716 0 0 0 0.4044 1 21575 21575 4.756 0.42677 1 31906 3097 20295 20306 36716 36716 0.1000848281881872 PTKKIKHKV 9 Unmodified _PTKKIKHKV_ 0 0 0 REV__L1M6_dup691|chr2:143688573-143690363:-|1.346455529872664|0.0094247747939457|7.16|151.0|21|1|sense REV__L1M6_dup691|chr2:143688573-143690363:-|1.346455529872664|0.0094247747939457|7.16|151.0|21|1|sense MSMS UPN47_class_I_Rep_2 3 539.8574829101562 2 539.858401 1077.70225 NaN NaN NaN NaN NaN NaN NaN 108.03 1 111.57 111.07 112.07 3.5333 0 0 0 0.39518 1 26171 26171 1.8442 0 1 + 31907 24727 20296 20307 36717 36717 0.16650580773239199 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 528.8667602539062 2 528.866226 1055.7179 0.33458 0.00017695 0.57118 0.00030208 0.90576 0.00047903 528.866522018234 108.8 0.10529 108.8 108.77 108.88 0 18 9 2 0 0 0 0.48846 3 26629 26629;26637;26643 1.8442 0 1 11839000 31908 13588 20297 20308 36718;36719;36720 36718 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 528.8662719726562 2 528.866226 1055.7179 0.33479 0.00017706 -0.20531 -0.00010858 0.12948 6.8477E-05 528.8660839350287 109.13 1.005 109.13 108.88 109.88 0 121 75 3 0 0 0 0.48846 2 26702 26702;26725 1.8442 0 1 7551500 31909 13588 20297 20308 36721;36722 36721 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.865966796875 2 528.866226 1055.7179 0.45732 0.00024186 -0.50601 -0.00026761 -0.048683 -2.5747E-05 528.865985152726 107.97 0.094559 111.61 111.57 111.67 3.6355 12 5 4 0 0 0 0.48846 1 26492 26492 1.8442 0 1 3608500 31910 13588 20297 20308 36723 36723 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.8663330078125 2 528.866226 1055.7179 0.45738 0.00024189 0.018861 9.9749E-06 0.47624 0.00025187 528.866150818803 108.28 0.49701 111.92 111.67 112.16 3.6355 171 47 4 0 0 0 0.48846 2 26529 26529;26616 1.8442 0 1 16820000 31911 13588 20297 20308 36724;36725 36724 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 528.3729248046875 2 528.866226 1055.7179 0.45622 0.00024128 -0.1834 -9.6994E-05 0.27282 0.00014429 528.8660660877816 109.59 0.16036 113.19 113.14 113.3 3.6046 28 20 2 0 0 0 0.12321 1 27055 27055 3.9444 0 1 425700 31912 13588 20297 20308 36726 36726 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MSMS UPN47_class_I_Rep_2 3 528.8662719726562 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 108.16 1 111.69 111.19 112.19 3.5333 0 0 0 0.39518 1 26209 26209 1.8442 0 1 31913 13588 20297 20308 36727 36727 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 528.8662719726562 2 528.866226 1055.7179 0.38754 0.00020496 -0.093878 -4.9649E-05 0.29366 0.00015531 528.866118828919 108.25 0.49974 111.78 111.41 111.91 3.5333 140 54 4 0 0 0 0.12462 1 26209 26209 1.8442 0 1 22419000 31914 13588 20297 20308 36728 36728 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.866455078125 2 528.866226 1055.7179 0.43524 0.00023018 -0.20687 -0.00010941 0.22837 0.00012078 528.8660324285653 108.26 0.43233 111.8 111.44 111.87 3.5382 109 47 4 0 0 0 0.48846 1 26481 26481 1.8442 0 1 21915000 31915 13588 20297 20308 36729 36729 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.8662109375 2 528.866226 1055.7179 0.43517 0.00023014 0.28823 0.00015243 0.72339 0.00038258 528.8664241261425 108.36 0.61046 111.9 111.87 112.48 3.5382 109 67 4 0 0 0 0.48846 1 26516 26516 1.8442 0 1 15852000 31916 13588 20297 20308 36730 36730 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MSMS UPN47_class_I_Rep_3 4 528.8661499023438 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 108.02 1 111.55 111.05 112.05 3.5382 0 0 0 0.39518 1 26398 26398 1.8442 0 1 31917 13588 20297 20308 36731 36731 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MSMS UPN47_class_I_Rep_3 4 528.8663330078125 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 108.13 1 111.67 111.17 112.17 3.5382 0 0 0 0.39518 1 26437 26437 1.8442 0 1 31918 13588 20297 20308 36732 36732 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 528.8663330078125 2 528.866226 1055.7179 0.43524 0.00023018 -0.20687 -0.00010941 0.22837 0.00012078 528.8660324285653 108.26 0.43233 111.8 111.44 111.87 3.5382 109 47 4 0 0 0 0.12462 1 26437 26437 1.8442 0 1 21915000 31919 13588 20297 20308 36733 36733 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 528.8663940429688 2 528.866226 1055.7179 0.31117 0.00016457 0.013036 6.8941E-06 0.32421 0.00017146 528.8661624624888 108.14 0.35546 111.77 111.48 111.84 3.6313 87 30 4 0 0 0 0.48846 1 26126 26126 1.8442 0 1 12070000 31920 13588 20297 20308 36734 36734 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 528.8663330078125 2 528.866226 1055.7179 0.31128 0.00016462 0.23961 0.00012672 0.55089 0.00029135 528.8662803844579 108.41 0.22522 112.04 111.91 112.13 3.6313 54 18 5 0 0 0 0.48846 1 26218 26218 1.8442 0 1 7825900 31921 13588 20297 20308 36735 36735 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MSMS UPN48_class_I_Rep_1 5 528.8663330078125 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 108.23 1 111.87 111.37 112.37 3.6313 0 0 0 0.39518 1 26173 26173 1.8442 0 1 31922 13588 20297 20308 36736 36736 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MSMS UPN48_class_I_Rep_3 7 528.8662109375 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 108 1 111.68 111.18 112.18 3.6813 0 0 0 0.39518 1 25515 25515 1.8442 0 1 31923 13588 20297 20308 36737 36737 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 528.37158203125 2 528.866226 1055.7179 0.47809 0.00025285 -0.21711 -0.00011482 0.26098 0.00013803 528.8660513826214 109.4 0.55519 113.07 112.98 113.54 3.6751 100 77 2 0 0 0 0.12462 1 26092 26092 1.8442 0 1 1265800 31924 13588 20297 20308 36738 36738 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 528.866226 1055.7179 0.45732 0.00024186 -0.50601 -0.00026761 -0.048683 -2.5747E-05 528.865985152726 107.97 0.094559 111.61 111.57 111.67 3.6355 -0.19993 -0.0004455 NaN 1.8442 12 5 4 NaN NaN NaN NaN 0 NaN NaN 0 3608500 31925 13588 20297 20308 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 528.866226 1055.7179 0.4132 0.00021853 -0.32006 -0.00016927 0.093136 4.9257E-05 528.8660085869712 109.51 0.50163 113.18 113.04 113.54 3.6715 0.032556 -7.4386E-05 NaN 3.9444 99 68 2 NaN NaN NaN NaN 0 NaN NaN 0 633480 31926 13588 20297 20308 0.19226867290308292 PTKKKKKKA 9 Unmodified _PTKKKKKKA_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|81|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 528.866226 1055.7179 0.47799 0.0002528 0.49276 0.0002606 0.97075 0.0005134 528.8664205170135 108.4 0.12906 112.07 112.05 112.18 3.6751 0.26379 0.00061093 NaN 1.8442 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 20065000 31927 13588 20297 20308 0.19226867290308292 PTKKQPQTKK 10 Unmodified _PTKKQPQTKK_ 0 0 0 REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|37|2|sense REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|37|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 591.8458251953125 2 592.361505 1182.70846 0.51035 0.00030231 -1.2758 -0.00075575 -0.76547 -0.00045343 592.8610903891037 108.29 0.45191 111.93 111.68 112.13 3.6355 87 42 3 0 0 0 0.84575 1 26655 26655 2.9952 1.5133 1 1875600 + 31928 27901 20298 20309 36739 36739 0.12441054214104952 PTKKQPQTKK 10 Unmodified _PTKKQPQTKK_ 0 0 0 REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|37|2|sense REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|37|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 592.361505 1182.70846 0.41056 0.0002432 -0.25794 -0.00015279 0.15262 9.0407E-05 592.3621250850329 108.37 0.087418 112 111.95 112.04 3.6313 0.087688 0.0008193 NaN 2.9952 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 446860 + 31929 27901 20298 20309 0.12441054214104952 PTKKQPQTKK 10 Unmodified _PTKKQPQTKK_ 0 0 0 REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|37|2|sense REV__L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|37|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 592.361505 1182.70846 0.4835 0.00028641 0.13034 7.721E-05 0.61384 0.00036362 592.3622960130831 108.13 0.090347 111.8 111.72 111.81 3.6746 -0.10666 0.0012793 NaN 2.9952 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1250200 + 31930 27901 20298 20309 0.12441054214104952 PTKKRSTTV 9 Unmodified _PTKKRSTTV_ 0 0 0 REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.3064270019531 2 509.306198 1016.59784 0.31791 0.00016191 -0.64803 -0.00033005 -0.33012 -0.00016813 509.305696996535 87.594 0.30643 87.594 87.386 87.693 0 48 25 2 0 0 0 0.48846 1 20995 20995 1.8442 0 1 419790 + 31931 24239 20299 20310 36740 36740 0.09020834225884755 PTKKRSTTV 9 Unmodified _PTKKRSTTV_ 0 0 0 REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 509.306198 1016.59784 0.31791 0.00016191 -0.64803 -0.00033005 -0.33012 -0.00016813 509.305696996535 87.594 0.30643 87.594 87.386 87.693 0 -0.016215 -0.00030478 NaN 1.8442 48 25 2 NaN NaN NaN NaN 0 NaN NaN 0 419790 + 31932 24239 20299 20310 0.09020834225884755 PTKKRSTTV 9 Unmodified _PTKKRSTTV_ 0 0 0 REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 509.306198 1016.59784 0.24102 0.00012275 -0.1049 -5.3426E-05 0.13612 6.9325E-05 509.30597697907467 84.23 0.42005 87.653 87.481 87.901 3.4232 0.043331 0.00024846 NaN 1.8442 77 54 2 NaN NaN NaN NaN 0 NaN NaN 0 135880 + 31933 24239 20299 20310 0.09020834225884755 PTKKRSTTV 9 Unmodified _PTKKRSTTV_ 0 0 0 REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense REV__L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 509.306198 1016.59784 0.24126 0.00012287 -0.31323 -0.00015953 -0.07197 -3.6655E-05 509.3059493914926 83.967 0.3326 87.565 87.296 87.629 3.5973 -0.045132 3.6252E-05 NaN 1.8442 65 39 2 NaN NaN NaN NaN 0 NaN NaN 0 184290 + 31934 24239 20299 20310 0.09020834225884755 PTKKSTKTKS 10 Unmodified _PTKKSTKTKS_ 0 0 0 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 MULTI-MSMS UPN47_class_I_Rep_2 3 553.3316650390625 2 553.332413 1104.65027 0.57135 0.00031614 -0.1374 -7.603E-05 0.43394 0.00024011 553.3322526942787 88.032 0.55297 91.479 91.23 91.783 3.4471 90 66 2 0 0 0 0.56333 1 21914 21914 1.4819 1.4819 1 138470 + 31935 20594 20300 20311 36741 36741 0.10213372568841805 PTKKSTKTKS 10 Unmodified _PTKKSTKTKS_ 0 0 0 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 MULTI-MSMS UPN48_class_I_Rep_1 5 553.332275390625 2 553.332413 1104.65027 0.50809 0.00028114 -0.16564 -9.1656E-05 0.34244 0.00018949 553.3322464362905 87.753 0.71565 91.371 91.114 91.83 3.6187 126 72 2 0 0 0 0.56333 1 21012 21012 1.4819 1.4819 1 260360 + 31936 20594 20300 20311 36742 36742 0.10213372568841805 PTKKSTKTKS 10 Unmodified _PTKKSTKTKS_ 0 0 0 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 MULTI-MSMS UPN48_class_I_Rep_2 6 553.3323364257812 2 553.332413 1104.65027 0.49294 0.00027276 -0.031572 -1.747E-05 0.46137 0.00025529 553.3323095626884 87.804 0.76944 91.532 91.154 91.924 3.7279 148 91 2 0 0 0 0.56333 1 20841 20841 1.4819 1.4819 1 295980 + 31937 20594 20300 20311 36743 36743 0.10213372568841805 PTKKSTKTKS 10 Unmodified _PTKKSTKTKS_ 0 0 0 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 553.332413 1104.65027 0.41129 0.00022758 -0.073139 -4.047E-05 0.33815 0.00018711 553.3323494918402 91.606 0.16144 91.606 91.559 91.72 0 0.1025 1.181E-05 NaN 1.4819 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 579250 + 31938 20594 20300 20311 0.10213372568841805 PTKKTSTKTAA 11 Unmodified _PTKKTSTKTAA_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.3302001953125 2 567.32987 1132.64519 0.53539 0.00030374 -0.0022423 -1.2721E-06 0.53315 0.00030247 567.3296812114305 83.608 2.1298 87.019 86.084 88.213 3.4116 467 276 3 0 0 0 0.67519 1 21114 21114 0.96228 0.96228 1 501860 + 31939 29040 20301 20312 36744 36744 0.08417068706262398 PTKKTSTKTAA 11 Unmodified _PTKKTSTKTAA_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3300170898438 2 567.32987 1132.64519 0.41226 0.00023389 -0.3095 -0.00017559 0.10276 5.8298E-05 567.3294448646102 94.002 0.43211 97.623 97.46 97.893 3.6208 87 51 2 0 0 0 0.67519 1 22650 22650 0.96228 0.36078 1 151690 + 31940 29040 20301 20312 36745 36745 0.08417068706262398 PTKKTSTKTAA 11 Unmodified _PTKKTSTKTAA_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 567.32987 1132.64519 0.41226 0.00023389 -0.3095 -0.00017559 0.10276 5.8298E-05 567.3294448646102 94.002 0.43211 97.623 97.46 97.893 3.6208 -0.09202 8.4155E-06 NaN 0.96228 87 51 2 NaN NaN NaN NaN 0 NaN NaN 0 151690 + 31941 29040 20301 20312 0.08417068706262398 PTKKTSTKTAA 11 Unmodified _PTKKTSTKTAA_ 0 0 0 REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense REV__L1PA11_dup529|chr2:184817159-184822536:+|1.9849019581705525|0.0099087407083735|7.65|148.0|109|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 567.32987 1132.64519 0.45322 0.00025713 -0.32748 -0.00018579 0.12574 7.1336E-05 567.3293407073695 93.915 0.54939 97.807 97.478 98.027 3.8914 0.09202 -1.1986E-05 NaN 0.96228 116 74 2 NaN NaN NaN NaN 0 NaN NaN 0 151060 + 31942 29040 20301 20312 0.08417068706262398 PTKLNTRQ 8 Unmodified _PTKLNTRQ_ 0 0 0 REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF REV__ENST00000337393.9_1_1:91406648-91406687:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 479.2781677246094 2 479.277441 956.540328 0.26784 0.00012837 1.3621 0.00065283 1.63 0.0007812 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.82752 2 17441 17441;17454 3.5965 0 1 496720 + 31943 21802 20302 20313 36746;36747 36746 0.060319920203255606 PTKNKNKQ 8 Unmodified _PTKNKNKQ_ 0 0 0 REV__L1PA15_dup2987|chr6:37950675-37951310:-|1.0592184725190867|0.0110269337285691|6.59|151.0|15|3|sense REV__L1PA15_dup2987|chr6:37950675-37951310:-|1.0592184725190867|0.0110269337285691|6.59|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.27679443359375 2 479.277441 956.540328 0.11705 5.6102E-05 -0.23064 -0.00011054 -0.11359 -5.4441E-05 479.2771831640305 73.243 1.1706 76.629 75.892 77.063 3.3861 121 91 2 0 0 0 0.82752 1 17996 17996 4.3292 0 1 114560 + 31944 29237 20303 20314 36748 36748 0.06031992020314192 PTKNLLNLPP 10 Unmodified _PTKNLLNLPP_ 0 0 0 REV__HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|52|3|sense REV__HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|52|3|sense MSMS UPN46_class_I_Rep_3 1 553.8299560546875 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 85.552 1 85.552 85.052 86.052 0 0 0 0 0.53105 1 20415 20415 4.897 1.3005 1 + 31945 23677 20304 20315 36749 36749 0.10094577919790026 PTKPNRRVRK 10 Unmodified _PTKPNRRVRK_ 0 0 0 nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENSG00000103351|ENST00000576634|CLUAP1 nc|ENSG00000103351|Q96AJ1-2|CLUAP1 nc|ENSG00000103351|Q96AJ1-2|CLUAP1 MSMS UPN46_class_I_Rep_3 1 626.3892211914062 2 626.391462 1250.76837 NaN NaN NaN NaN NaN NaN NaN 108.41 1 108.41 107.91 108.91 0 0 0 0 0.53105 1 26508 26508 6.2058 1.3088 1 31946 1656 20305 20316 36750 36750 0.15301789668023957 PTKQPRTPRP 10 Unmodified _PTKQPRTPRP_ 0 0 0 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3433227539062 2 589.343646 1176.67274 0.54472 0.00032103 -1.0097 -0.00059504 -0.46495 -0.00027402 589.3428610526687 90.294 0.2297 90.294 90.195 90.425 0 45 20 3 0 0 0 0.55448 1 21797 21797 4.897 1.6157 1 373240 31947 2367 20306 20317 36751 36751 0.09147016757128767 PTKQPRTPRP 10 Unmodified _PTKQPRTPRP_ 0 0 0 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 MSMS UPN47_class_I_Rep_3 4 589.3438720703125 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 86.804 1 90.184 89.684 90.684 3.3801 0 0 0 0.53105 1 21756 21756 2.4985 0 1 31948 2367 20306 20317 36752 36752 0.09147016757128767 PTKRELEL 8 Unmodified _PTKRELEL_ 0 0 0 ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22 ENSG00000124422|ENST00000261497|USP22 ENSG00000124422|ENST00000261497|USP22 MULTI-MSMS UPN47_class_I_Rep_3 4 493.2869567871094 2 493.287474 984.560395 -0.64371 -0.00031753 -0.30163 -0.00014879 -0.94534 -0.00046633 493.2872093488921 15.076 0.49065 18.442 18.319 18.809 3.3659 130 56 3 0 0 0 0.82752 1 688 688 6.2058 0.9089 1 174740 31949 2465 20307 20318 36753 36753 0.06749742960278127 PTKRIIYKGLG 11 Unmodified _PTKRIIYKGLG_ 0 0 0 REV__L1PA15_dup4227|chr9:21899812-21901179:+|1.3686055864492748|0.0737080890930778|4.21|151.0|16|2|sense REV__L1PA15_dup4227|chr9:21899812-21901179:+|1.3686055864492748|0.0737080890930778|4.21|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 623.3880004882812 2 623.387522 1244.76049 0.49383 0.00030785 0.33427 0.00020838 0.8281 0.00051623 623.3875320177227 108.72 0.62381 112.39 112.23 112.85 3.6746 140 65 3 0 0 0 0.61292 1 25786 25786 4.897 1.3005 1 17460000 + 31950 29244 20308 20319 36754 36754 0.14790217627864877 PTKTKKKEF 9 Unmodified _PTKTKKKEF_ 0 0 0 L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|8|1|sense L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|8|1|sense L1PB1_dup1654|chr2:190491440-190492499:+|1.2494359479980073|0.0618317434179414|4.34|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 553.8298950195312 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.739 1 83.034 82.534 83.534 3.295 0 0 0 0.3967 1 19947 19947 1.4819 0.15237 1 31951 15058 20309 20320 36755 36755 0.10094577919812764 PTKTRHPRK 9 Unmodified _PTKTRHPRK_ 0 0 0 ENST00000538941.6_1_15:77085706-77134263:-|nuORF;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;ENSG00000140386|ENST00000563290|SCAPER ENST00000538941.6_1_15:77085706-77134263:-|nuORF ENST00000538941.6_1_15:77085706-77134263:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 560.33984375 2 560.838531 1119.66251 0.42204 0.0002367 3.1868 0.0017873 3.6089 0.002024 561.3409686007034 101.14 0.046295 104.96 104.92 104.97 3.8153 6 5 2 0 0 0 0.12354 1 23926 23926 3.5965 0.31518 1 90656 31952 3170 20310 20321 36756 36756 0.10746453822548574 PTKVQTTAL 9 Unmodified _PTKVQTTAL_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-MSMS UPN47_class_I_Rep_1 2 479.56427001953125 2 479.782025 957.549496 -0.29789 -0.00014292 -0.24705 -0.00011853 -0.54494 -0.00026145 479.7819226446694 36.395 0.30754 40.064 39.97 40.277 3.6692 33 24 2 0 0 0 0.48643 1 6829 6829 2.0598 0 1 34241 + 31953 17905 20311 20322 36757 36757 0.06902340585986622 PTKYIRFIPI 10 Unmodified _PTKYIRFIPI_ 0 0 0 MSTD-int_dup528|chr10:87886977-87888294:+|2.947138293787685|0.1115571712734523|4.72|151.0|36|1|anti-sense MSTD-int_dup528|chr10:87886977-87888294:+|2.947138293787685|0.1115571712734523|4.72|151.0|36|1|anti-sense MSTD-int_dup528|chr10:87886977-87888294:+|2.947138293787685|0.1115571712734523|4.72|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_1 5 624.3804321289062 2 624.379166 1246.74378 NaN NaN NaN NaN NaN NaN NaN 110.34 1 113.97 113.47 114.47 3.6326 0 0 0 0.53105 1 26785 26785 1.4819 0 1 31954 16605 20312 20323 36758 36758 0.13027716741953554 PTLCLDLKIK 10 Unmodified _PTLCLDLKIK_ 0 0 0 REV__L1ME3G_dup16359|chr22:40160872-40161316:-|1.2954096990165709|0.0110853308180859|6.87|151.0|16|3|sense REV__L1ME3G_dup16359|chr22:40160872-40161316:-|1.2954096990165709|0.0110853308180859|6.87|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 572.3003540039062 2 572.343935 1142.67332 NaN NaN NaN NaN NaN NaN NaN 68.563 1 72.015 71.515 72.515 3.4517 0 0 0 0.53105 1 15841 15841 2.9952 1.151 1 + 31955 28187 20313 20324 36759 36759 0.1076867536194186 PTLHLDNQY 9 Unmodified _PTLHLDNQY_ 0 0 0 REV__ENSG00000184144|ENST00000331830|CNTN2 REV__ENSG00000184144|ENST00000331830|CNTN2 MULTI-MSMS UPN47_class_I_Rep_2 3 550.7721557617188 2 550.772188 1099.52982 0.50561 0.00027848 -0.62913 -0.00034651 -0.12352 -6.803E-05 550.7720337255846 56.455 0.89194 59.756 59.336 60.228 3.3009 136 61 3 0 0 0 0.32219 1 12891 12891 12.532 0.89125 1 378840 + 31956 20809 20314 20325 36760 36760 -0.015960354247681607 PTLHRFDYCRF 11 Unmodified _PTLHRFDYCRF_ 0 0 0 L1MC1_dup2634|chr3:136683585-136684467:+|1.1072272041295146|0.0152798023364284|6.18|151.0|56|3|anti-sense L1MC1_dup2634|chr3:136683585-136684467:+|1.1072272041295146|0.0152798023364284|6.18|151.0|56|3|anti-sense L1MC1_dup2634|chr3:136683585-136684467:+|1.1072272041295146|0.0152798023364284|6.18|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8109436035156 3 485.571439 1453.69249 NaN NaN NaN NaN NaN NaN NaN 39.633 1 43.012 42.512 43.512 3.3785 0 0 0 0.38417 1 7806 7806 1.4551 0 1 31957 11127 20315 20326 36761 36761 -0.01620975294440541 PTLKLLFEFA 10 Unmodified _PTLKLLFEFA_ 0 0 0 REV__ENSG00000008838|ENST00000394128|MED24 REV__ENSG00000008838|ENST00000394128|MED24 MSMS UPN48_class_I_Rep_1 5 589.84521484375 2 589.844625 1177.6747 NaN NaN NaN NaN NaN NaN NaN 82.311 1 85.886 85.386 86.386 3.5753 0 0 0 0.53105 1 19653 19653 2.9952 1.151 1 + 31958 17557 20316 20327 36762 36762 0.09296632722384857 PTLLAPGTL 9 Unmodified _PTLLAPGTL_ 0 0 0 ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 441.768310546875 2 441.768386 881.522219 0.13982 6.1767E-05 0.70634 0.00031204 0.84616 0.00037381 441.76854469297444 60.5 0.37772 64.017 63.773 64.151 3.5169 44 33 2 0 0 0 0.42249 1 13312 13312 6.7232 0 1 90794 31959 2721 20317 20328 36763 36763 0.07671857045625075 PTLSAPRRPR 10 Unmodified _PTLSAPRRPR_ 0 0 0 REV__ENST00000483334.1_1_2:71206188-71209754:+|nuORF REV__ENST00000483334.1_1_2:71206188-71209754:+|nuORF MSMS UPN47_class_I_Rep_1 2 575.8436279296875 2 575.843813 1149.67307 NaN NaN NaN NaN NaN NaN NaN 82.874 1 86.413 85.913 86.913 3.5386 0 0 0 0.53105 1 20713 20713 1.4819 0.15237 1 + 31960 19473 20318 20329 36764 36764 0.10422436476960684 PTLTLHFSNG 10 Unmodified _PTLTLHFSNG_ 0 0 0 L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|127|3|sense L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|127|3|sense L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|127|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.7825317382812 2 543.782556 1085.55056 0.12722 6.9182E-05 -0.027963 -1.5206E-05 0.099262 5.3977E-05 543.7826396579136 44.538 2.5245 48.233 47.76 50.284 3.6951 396 161 3 0 0 0 0.47413 1 9562 9562 13.906 0 1 7323300 31961 14405 20319 20330 36765 36765 0.01120554954900399 PTMKLPFFH 9 Unmodified _PTMKLPFFH_ 0 0 0 L1MC4_dup2251|chr2:36993592-36994299:+|2.008798055116659|0.1084960117713139|4.21|151.0|33|1|anti-sense L1MC4_dup2251|chr2:36993592-36994299:+|2.008798055116659|0.1084960117713139|4.21|151.0|33|1|anti-sense L1MC4_dup2251|chr2:36993592-36994299:+|2.008798055116659|0.1084960117713139|4.21|151.0|33|1|anti-sense MSMS UPN46_class_I_Rep_3 1 559.2957763671875 2 559.296788 1116.57902 NaN NaN NaN NaN NaN NaN NaN 71.273 1 71.273 70.773 71.773 0 0 0 0 0.39428 1 16410 16410 2.0598 1.2661 1 31962 11465 20320 20331 36766 36766 0.025395813304839976 PTMYKLAVR 9 Unmodified _PTMYKLAVR_ 0 0 0 REV__ENST00000552099.5_1_12:49165333-49167571:-|nuORF REV__ENST00000552099.5_1_12:49165333-49167571:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 539.7728881835938 2 539.807519 1077.60049 0.49852 0.00026911 -3.0981 -0.0016724 -2.5996 -0.0014033 539.8053019242112 65.66 0.15881 69.139 69.069 69.228 3.4792 13 9 2 0 0 0 0.12034 1 14936 14936 7.2892 0.56607 1 45336 + 31963 20514 20321 20332 36767 36767 0.06478966359190963 PTPARPRRA 9 Unmodified _PTPARPRRA_ 0 0 0 ENST00000451091.2_1_1:40041668-40042359:-|nuORF ENST00000451091.2_1_1:40041668-40042359:-|nuORF ENST00000451091.2_1_1:40041668-40042359:-|nuORF MSMS UPN47_class_I_Rep_3 4 511.2925720214844 2 511.304324 1020.5941 NaN NaN NaN NaN NaN NaN NaN 35.607 1 38.861 38.361 39.361 3.2547 0 0 0 0.38784 1 6615 6615 3.5965 0 1 31964 6812 20322 20333 36768 36768 0.08462209242702556 PTPEDEDD 8 Unmodified _PTPEDEDD_ 0 0 0 nc|ENSG00000242265|Q86TG7-2|PEG10;nc|ENSG00000242265|Q86TG7-3|PEG10;nc|ENSG00000242265|Q86TG7-5|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10 nc|ENSG00000242265|Q86TG7-2|PEG10 nc|ENSG00000242265|Q86TG7-2|PEG10 MSMS UPN48_class_I_Rep_2 6 459.17205810546875 2 459.17217 916.329786 NaN NaN NaN NaN NaN NaN NaN 63.346 1 66.82 66.32 67.32 3.4738 0 0 0 0.40746 1 14234 14234 0.69038 0 1 31965 5713 20323 20334 36769 36769 -0.13172554883033172 PTPIYKGK 8 Unmodified _PTPIYKGK_ 0 0 0 REV__L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|1|1|sense REV__L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.268798828125 2 452.268553 902.522553 -0.08993 -4.0673E-05 0.90953 0.00041135 0.8196 0.00037068 452.26884820314143 29.134 0.13633 29.134 29.019 29.155 0 20 13 2 0 0 0 0.82752 1 4570 4570 0.69038 0 1 269470 + 31966 27900 20324 20335 36770 36770 0.06739276765483737 PTPKQSWYI 9 Unmodified _PTPKQSWYI_ 0 0 0 REV__ENSG00000166535|ENST00000299698|A2ML1 REV__ENSG00000166535|ENST00000299698|A2ML1 MULTI-MSMS UPN47_class_I_Rep_1 2 560.2955932617188 2 560.295299 1118.57605 0.35143 0.0001969 0.16667 9.3386E-05 0.5181 0.00029029 560.2949654682027 66.743 1.0697 70.101 69.596 70.666 3.3584 174 79 3 0 0 0 0.35081 1 16068 16068 10.824 0 1 364070 + 31967 20180 20325 20336 36771 36771 0.02150029477343196 PTPMSPCPY 9 Unmodified _PTPMSPCPY_ 0 0 0 REV__ENSG00000177398.18,UMODL1,chr21,+,I23.1,42123151,42126344|32|8.43|2|intron REV__ENSG00000177398.18,UMODL1,chr21,+,I23.1,42123151,42126344|32|8.43|2|intron MSMS UPN47_class_I_Rep_1 2 496.7120056152344 2 496.714439 991.414325 NaN NaN NaN NaN NaN NaN NaN 51.454 1 55.047 54.547 55.547 3.5932 0 0 0 0.39428 1 11371 11371 2.0598 1.2661 1 + 31968 20618 20326 20337 36772 36772 -0.08172598871624359 PTPPRRGA 8 Unmodified _PTPPRRGA_ 0 0 0 REV__ENST00000462632.5_3_6:29599325-29601631:-|nuORF REV__ENST00000462632.5_3_6:29599325-29601631:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 426.2458801269531 2 426.245944 850.477334 -0.078848 -3.3609E-05 0.14421 6.147E-05 0.065364 2.7861E-05 426.24593724159837 82.881 1.5692 86.469 85.518 87.087 3.5871 310 184 2 0 0 0 0.82752 1 19912 19912 0.69038 0 1 450170 + 31969 22443 20327 20338 36773 36773 0.046114710229517186 PTPYLLMYL 9 Unmodified _PTPYLLMYL_ 0 0 0 REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|42|1|sense REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|42|1|sense MSMS UPN47_class_I_Rep_1 2 555.7991943359375 2 555.798829 1109.5831 NaN NaN NaN NaN NaN NaN NaN 82.65 1 86.189 85.689 86.689 3.5386 0 0 0 0.38299 1 20653 20653 4.756 0 1 + 31970 23589 20328 20339 36774 36774 0.03269626033534223 PTPYLLMYL 9 Unmodified _PTPYLLMYL_ 0 0 0 REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|42|1|sense REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|42|1|sense MSMS UPN47_class_I_Rep_3 4 555.799560546875 2 555.798829 1109.5831 NaN NaN NaN NaN NaN NaN NaN 78.441 1 81.723 81.223 82.223 3.2816 0 0 0 0.39326 1 19563 19563 2.3027 0 1 + 31971 23589 20328 20339 36775 36775 0.03269626033534223 PTQGKQHEST 10 Unmodified _PTQGKQHEST_ 0 0 0 REV__LTR12C_dup385|chr3:11510875-11512160:-|3.555902751723633|0.0520425189754248|6.09|151.0|7|1|sense REV__LTR12C_dup385|chr3:11510875-11512160:-|3.555902751723633|0.0520425189754248|6.09|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 556.772705078125 2 556.770177 1111.5258 NaN NaN NaN NaN NaN NaN NaN 81.602 1 84.986 84.486 85.486 3.3839 0 0 0 0.53105 1 20327 20327 1.1933 0.39971 1 + 31972 30800 20329 20340 36776 36776 -0.025501249184799235 PTQGLHHW 8 Unmodified _PTQGLHHW_ 0 0 0 L1ME4b_dup3655|chr3:33859454-33860137:+|1.0540817118287|0.3991861414297973|1.4|151.0|34|1|anti-sense L1ME4b_dup3655|chr3:33859454-33860137:+|1.0540817118287|0.3991861414297973|1.4|151.0|34|1|anti-sense L1ME4b_dup3655|chr3:33859454-33860137:+|1.0540817118287|0.3991861414297973|1.4|151.0|34|1|anti-sense MSMS UPN46_class_I_Rep_3 1 488.1217041015625 2 488.243401 974.472249 NaN NaN NaN NaN NaN NaN NaN 84.396 1 84.396 83.896 84.896 0 0 0 0 0.40604 1 20077 20077 2.5775 0 1 31973 12926 20330 20341 36777 36777 -0.016008328396765137 PTQIEKYT 8 Unmodified _PTQIEKYT_ 0 0 0 REV__L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|23|1|sense REV__L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|23|1|sense MSMS UPN46_class_I_Rep_3 1 490.2574157714844 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 92.202 1 92.202 91.702 92.702 0 0 0 0 0.40643 1 22304 22304 2.0598 0 1 + 31974 30107 20331 20342 36778 36778 0.012100613149868877 PTQWSHFYL 9 Unmodified _PTQWSHFYL_ 0 0 0 L1PA14_dup341|chr2:112221556-112222452:-|1.3453796085026568|0.3457606022070092|1.96|151.0|1|1|sense L1PA14_dup341|chr2:112221556-112222452:-|1.3453796085026568|0.3457606022070092|1.96|151.0|1|1|sense L1PA14_dup341|chr2:112221556-112222452:-|1.3453796085026568|0.3457606022070092|1.96|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 589.7838745117188 2 589.785099 1177.55564 NaN NaN NaN NaN NaN NaN NaN 86.896 1 90.687 90.187 91.187 3.7905 0 0 0 0.38916 1 20617 20617 3.2813 0.78282 1 31975 13854 20332 20343 36779 36779 -0.026031411824760653 PTRPKRAIKV 10 Unmodified _PTRPKRAIKV_ 0 0 0 REV__nc|ENSG00000170949|Q9HCG1-2|ZNF160 REV__nc|ENSG00000170949|Q9HCG1-2|ZNF160 MSMS UPN46_class_I_Rep_3 1 583.3778686523438 2 583.380032 1164.74551 NaN NaN NaN NaN NaN NaN NaN 103.91 1 103.91 103.41 104.41 0 0 0 0 0.53105 1 25363 25363 0.40072 0 1 + 31976 20391 20333 20344 36780 36780 0.1697277055052382 PTRPVVICH 9 Unmodified _PTRPVVICH_ 0 0 0 REV__ENST00000348035.8_1_7:6442368-6442464:+|nuORF REV__ENST00000348035.8_1_7:6442368-6442464:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.2841491699219 2 511.284211 1020.55387 NaN NaN NaN NaN NaN NaN NaN 37.514 1 41.217 40.717 41.717 3.7021 0 0 0 0.39326 1 6428 6428 2.3027 0.4585 1 + 31977 21847 20334 20345 36781 36781 0.044415265279099 PTRRNQLWDT 10 Unmodified _PTRRNQLWDT_ 0 0 0 LTR12F_dup587|chr19:3153003-3153196:+|1.0450834781552203|0.0480260230115453|4.44|151.0|6|3|sense LTR12F_dup587|chr19:3153003-3153196:+|1.0450834781552203|0.0480260230115453|4.44|151.0|6|3|sense LTR12F_dup587|chr19:3153003-3153196:+|1.0450834781552203|0.0480260230115453|4.44|151.0|6|3|sense MSMS UPN47_class_I_Rep_3 4 643.8328857421875 2 643.833643 1285.65273 NaN NaN NaN NaN NaN NaN NaN 44.347 1 47.591 47.091 48.091 3.2441 0 0 0 0.53105 1 9291 9291 1.4819 0 1 31978 15555 20335 20346 36782 36782 0.021332210264972673 PTSNKKLKLV 10 Unmodified _PTSNKKLKLV_ 0 0 0 REV__L1MC4_dup11831|chr8:51877775-51878092:+|1.108610623881304|0.009959303945719|6.8|151.0|3|1|sense REV__L1MC4_dup11831|chr8:51877775-51878092:+|1.108610623881304|0.009959303945719|6.8|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 564.3598022460938 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 79.703 1 83.168 82.668 83.668 3.465 0 0 0 0.53105 1 19868 19868 0.40072 0 1 + 31979 26806 20336 20347 36783 36783 0.14910839845219925 PTSPDLLK 8 Unmodified _PTSPDLLK_ 0 0 0 REV__ENSG00000163257|ENST00000382247|DCAF16 REV__ENSG00000163257|ENST00000382247|DCAF16 MSMS UPN48_class_I_Rep_1 5 435.75128173828125 2 435.750193 869.485833 NaN NaN NaN NaN NaN NaN NaN 75.805 1 79.305 78.805 79.805 3.4996 0 0 0 0.40604 1 17981 17981 2.5775 0 1 + 31980 19973 20337 20348 36784 36784 0.04586980148917519 PTSSTGEKNY 10 Unmodified _PTSSTGEKNY_ 0 0 0 MER101-int_dup747|chr12:9658902-9659373:+|1.828808166832802|0.2746684663830911|2.74|151.0|3|1|sense MER101-int_dup747|chr12:9658902-9659373:+|1.828808166832802|0.2746684663830911|2.74|151.0|3|1|sense MER101-int_dup747|chr12:9658902-9659373:+|1.828808166832802|0.2746684663830911|2.74|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.252197265625 2 542.251286 1082.48802 -0.2161 -0.00011718 0.13509 7.3255E-05 -0.08101 -4.3928E-05 542.2512774704483 15.165 0.65807 15.165 15.029 15.687 0 143 76 3 0 0 0 0.56033 1 787 787 3.5965 3.5965 1 170510 31981 15752 20338 20349 36785 36785 -0.04992635903954579 PTTGIIISDL 10 Unmodified _PTTGIIISDL_ 0 0 0 ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|4|intron;ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|2|intron;ENSG00000104356|ENST00000401707|POP1 ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|4|intron ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|4|intron MSMS UPN47_class_I_Rep_2 3 515.294677734375 2 515.294965 1028.57538 NaN NaN NaN NaN NaN NaN NaN 79.344 1 82.699 82.199 83.199 3.3554 0 0 0 0.53105 1 19747 19747 8.7454 0 1 31982 1684 20339 20350 36786 36786 0.06223190037621862 PTTGIIISDL 10 Unmodified _PTTGIIISDL_ 0 0 0 ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|4|intron;ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|2|intron;ENSG00000104356|ENST00000401707|POP1 ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|4|intron ENSG00000104356.11,POP1,chr8,+,I13.1,98146684,98148814|36|3.16|4|intron MULTI-MSMS UPN47_class_I_Rep_3 4 515.2947998046875 2 515.294965 1028.57538 0.30465 0.00015699 -0.12176 -6.2743E-05 0.18289 9.4243E-05 515.2948971272141 79.174 0.58411 82.469 82.229 82.813 3.295 87 50 2 0 0 0 0.52562 1 19877 19877 8.7454 0 1 245580 31983 1684 20339 20350 36787 36787 0.06223190037621862 PTTHKKKKK 9 Unmodified _PTTHKKKKK_ 0 0 0 AluSx1_dup2527|chr1:32851385-32851699:+|1.013658892309962|0.2759230597946723|1.88|151.0|4|1|sense AluSx1_dup2527|chr1:32851385-32851699:+|1.013658892309962|0.2759230597946723|1.88|151.0|4|1|sense AluSx1_dup2527|chr1:32851385-32851699:+|1.013658892309962|0.2759230597946723|1.88|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 548.3521728515625 2 548.353483 1094.69241 NaN NaN NaN NaN NaN NaN NaN 83.071 1 83.071 82.571 83.571 0 0 0 0 0.4007 1 19709 19709 0.52476 0 1 31984 314 20340 20351 36788 36788 0.14885392767882877 PTTHLIANGY 10 Unmodified _PTTHLIANGY_ 0 0 0 REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|90|3|sense REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|90|3|sense MSMS UPN47_class_I_Rep_3 4 544.2478637695312 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 49.808 1 53.035 52.535 53.535 3.2262 0 0 0 0.53105 1 10949 10949 6.7232 1.4925 1 + 31985 26593 20341 20352 36789 36789 0.01120554954900399 PTTKTYFPHF 10 Unmodified _PTTKTYFPHF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 619.81494140625 2 619.813856 1237.61316 0.41531 0.00025741 0.15404 9.5478E-05 0.56935 0.00035289 619.8138965044851 47.885 0.64244 51.407 51.256 51.899 3.5219 75 42 2 0 0 0 0.31534 5 9543 9486;9505;9526;9543;9593 28.495 19.749 1 110730 + 31986 5235 20342 20353 36790;36791;36792;36793;36794 36793 0.0038570102308312926 PTTKTYFPHF 10 Unmodified _PTTKTYFPHF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 620.316162109375 2 619.813856 1237.61316 0.39177 0.00024282 0.31321 0.00019413 0.70498 0.00043695 619.8140469131299 47.758 0.79023 51.494 51.201 51.992 3.7361 87 55 2 0 0 0 0.30625 7 9479 9397;9437;9468;9479;9528;9535;9563 31.268 21.885 1 182210 + 31987 5235 20342 20353 36795;36796;36797;36798;36799;36800;36801 36798 0.0038570102308312926 PTTKTYFPHF 10 Unmodified _PTTKTYFPHF_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 619.8140869140625 2 619.813856 1237.61316 0.50169 0.00031095 0.0766 4.7478E-05 0.57829 0.00035843 619.8138455309095 47.944 0.70996 51.578 51.273 51.983 3.6339 62 45 2 0 0 0 0.22704 6 9469 9384;9429;9469;9508;9519;9526 57.249 44.207 1 275220 + 31988 5235 20342 20353 36802;36803;36804;36805;36806;36807 36804 0.0038570102308312926 PTTKTYFPHFD 11 Unmodified _PTTKTYFPHFD_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_1 2 451.8866882324219 3 451.88731 1352.6401 -0.17604 -7.9549E-05 -0.57598 -0.00026028 -0.75202 -0.00033983 451.8868952033243 46.585 0.6795 50.285 50.011 50.69 3.6999 75 45 2 0 0 0 0.66279 1 9899 9899 2.084 1.4571 1 103620 + 31989 5235 20343 20354 36808 36808 -0.02211235156391922 PTTKTYFPHFD 11 Unmodified _PTTKTYFPHFD_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 451.8871154785156 3 451.88731 1352.6401 0.0064268 2.9042E-06 -0.28592 -0.0001292 -0.2795 -0.0001263 451.88704057978373 47.113 0.60596 50.632 50.308 50.914 3.5192 77 37 3 0 0 0 0.29512 3 9222 9222;9264;9317 25.438 18.404 1 217120 + 31990 5235 20343 20354 36809;36810;36811 36809 -0.02211235156391922 PTTKTYFPHFD 11 Unmodified _PTTKTYFPHFD_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 451.8862609863281 3 451.88731 1352.6401 0.060923 2.753E-05 -0.43205 -0.00019524 -0.37113 -0.00016771 451.8870586302368 46.796 0.80237 50.545 50.152 50.954 3.7494 106 57 3 0 0 0 0.26609 4 9206 9136;9185;9206;9247 18.853 15.497 1 228480 + 31991 5235 20343 20354 36812;36813;36814;36815 36814 -0.02211235156391922 PTTKTYFPHFD 11 Unmodified _PTTKTYFPHFD_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 451.8871154785156 3 451.88731 1352.6401 0.091348 4.1279E-05 -0.38523 -0.00017408 -0.29389 -0.0001328 451.8871300316671 46.988 0.66728 50.624 50.311 50.978 3.6363 102 46 3 0 0 0 0.33561 2 9126 9126;9184 12.35 8.9946 1 264890 + 31992 5235 20343 20354 36816;36817 36816 -0.02211235156391922 PTTKTYFPHFD 11 Unmodified _PTTKTYFPHFD_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 451.88731 1352.6401 -0.33285 -0.00015041 -0.66774 -0.00030175 -1.0006 -0.00045216 451.88685521091793 47.214 0.59798 50.458 50.119 50.717 3.2439 -0.050635 -0.00031459 NaN 18.853 61 37 2 NaN NaN NaN NaN 0 NaN NaN 0 72596 + 31993 5235 20343 20354 -0.02211235156391922 PTTPQDRSGRQ 11 Unmodified _PTTPQDRSGRQ_ 0 0 0 ENST00000602795.5_1_20:57569940-57570117:+|nuORF ENST00000602795.5_1_20:57569940-57570117:+|nuORF ENST00000602795.5_1_20:57569940-57570117:+|nuORF MSMS UPN48_class_I_Rep_3 7 621.8154296875 2 621.812907 1241.61126 NaN NaN NaN NaN NaN NaN NaN 75.404 1 78.97 78.47 79.47 3.5659 0 0 0 0.38417 1 17710 17710 2.4985 0 1 31994 7669 20344 20355 36818 36818 0.0001204026718824025 PTTTEHTYL 9 Unmodified _PTTTEHTYL_ 0 0 0 REV__L1MB2_dup2562|chr5:132297955-132298624:+|2.2255577823714505|0.3884481929148051|2.52|151.0|42|3|anti-sense REV__L1MB2_dup2562|chr5:132297955-132298624:+|2.2255577823714505|0.3884481929148051|2.52|151.0|42|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 531.7586059570312 2 531.758746 1061.50294 0.21292 0.00011322 0.40873 0.00021734 0.62165 0.00033057 531.7587686180599 67.1 0.56495 70.364 70.141 70.706 3.2636 69 42 2 0 0 0 0.41259 1 16178 16178 7.2892 1.0834 1 95321 + 31995 25716 20345 20356 36819 36819 -0.02535144035960002 PTTTQLFY 8 Unmodified _PTTTQLFY_ 0 0 0 REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 485.7475891113281 2 485.74765 969.480748 0.10797 5.2444E-05 0.28879 0.00014028 0.39675 0.00019272 485.74758926894634 62.458 0.58536 65.625 65.371 65.956 3.1667 65 34 3 0 0 0 0.82752 1 14861 14861 11.64 0 1 78258 + 31996 19796 20346 20357 36820 36820 -0.00521323713712718 PTTYRITIP 9 Unmodified _PTTYRITIP_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MSMS UPN48_class_I_Rep_1 5 531.3030395507812 2 531.303124 1060.5917 0.44101 0.00023431 -0.61383 -0.00032613 -0.17282 -9.1819E-05 531.3027457274211 64.067 1.1017 67.525 67.233 68.335 3.4578 137 84 3 0 0 0 0.23293 1 14576 14576 18.146 0 1 735970 + 31997 20955 20347 20358 36821 36821 0.06382315994369492 PTVEKAIF 8 Unmodified _PTVEKAIF_ 0 0 0 L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|115|3|anti-sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|115|3|anti-sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_2 6 452.7595520019531 2 452.760561 903.506569 NaN NaN NaN NaN NaN NaN NaN 50.017 1 53.711 53.211 54.211 3.6946 0 0 0 0.40604 1 10168 10168 2.5775 0 1 31998 11915 20348 20359 36822 36822 0.050955705285559816 PTVLGSSALV 10 Unmodified _PTVLGSSALV_ 0 0 0 THE1B-int_dup2084|chr7:92862382-92863909:-|3.34743956109782|0.0081550119249957|8.68|151.0|77|3|anti-sense;THE1C-int_dup1516|chr13:72946434-72947638:-|2.2599541547665343|0.0283354812412026|6.32|150.0|56|2|anti-sense THE1B-int_dup2084|chr7:92862382-92863909:-|3.34743956109782|0.0081550119249957|8.68|151.0|77|3|anti-sense THE1B-int_dup2084|chr7:92862382-92863909:-|3.34743956109782|0.0081550119249957|8.68|151.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.27618408203125 2 472.276575 942.538597 -0.20572 -9.7155E-05 -0.47707 -0.00022531 -0.68279 -0.00032246 472.2760831720979 44.02 0.68421 47.715 47.326 48.01 3.6951 92 42 3 0 0 0 0.46161 1 9124 9124 14.838 0 1 199750 31999 32902 20349 20360 36823 36823 0.06502938211701803 PTVQKLQLLLY 11 Unmodified _PTVQKLQLLLY_ 0 0 0 HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|56|2|anti-sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|56|2|anti-sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|56|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.2713928222656 3 439.270984 1314.79112 -0.0016553 -7.2715E-07 0.69561 0.00030556 0.69395 0.00030483 439.27120754384134 37.936 0.4765 41.442 41.284 41.761 3.5052 78 46 2 0 0 0 0.6724 1 6569 6569 1.2148 0 1 177120 32000 8425 20350 20361 36824 36824 0.14631951222281714 PTVQKLQLLLY 11 Unmodified _PTVQKLQLLLY_ 0 0 0 HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|56|2|anti-sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|56|2|anti-sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|56|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.2716064453125 3 439.270984 1314.79112 0.052837 2.321E-05 0.68042 0.00029889 0.73326 0.0003221 439.2711741598156 37.046 0.66172 40.709 40.507 41.168 3.663 91 68 2 0 0 0 0.67356 1 6263 6263 1.1098 0.33322 1 156440 32001 8425 20350 20361 36825 36825 0.14631951222281714 PTYGSYFITL 10 Unmodified _PTYGSYFITL_ 0 0 0 REV__L1MB1_dup4504|chr12:64439949-64441292:-|2.7811986724753224|0.3821666314631635|2.86|151.0|92|3|anti-sense REV__L1MB1_dup4504|chr12:64439949-64441292:-|2.7811986724753224|0.3821666314631635|2.86|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.2945556640625 2 581.294965 1160.57538 0.47678 0.00027715 -0.28816 -0.00016751 0.18862 0.00010964 581.2948254289576 82.304 0.20792 85.973 85.912 86.12 3.669 42 24 2 0 0 0 0.38974 1 19544 19544 20.415 2.0414 1 100170 + 32002 25670 20351 20362 36826 36826 0.0015119003760446503 PTYIRLSFT 9 Unmodified _PTYIRLSFT_ 0 0 0 REV__ENST00000556365.1_1_14:23377855-23380602:-|nuORF REV__ENST00000556365.1_1_14:23377855-23380602:-|nuORF MSMS UPN47_class_I_Rep_1 2 549.3013916015625 2 549.303124 1096.5917 NaN NaN NaN NaN NaN NaN NaN 99.848 1 103.64 103.14 104.14 3.7942 0 0 0 0.38784 1 24688 24688 3.5965 1.2938 1 + 32003 22991 20352 20363 36827 36827 0.04726315994366814 PVAAGMQTEL 10 Unmodified _PVAAGMQTEL_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MULTI-MSMS UPN47_class_I_Rep_1 2 508.7574768066406 2 508.757692 1015.50083 -0.08079 -4.1103E-05 -0.22442 -0.00011418 -0.30521 -0.00015528 508.7575311840555 44.233 0.94392 47.928 47.455 48.399 3.6951 111 64 2 0 0 0 0.48573 1 9168 9168 13.042 2.2185 1 147980 32004 3711 20353 20364 36828 36828 -0.0062989604541598965 PVACLSPVSLA 11 Unmodified _PVACLSPVSLA_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|438|3|anti-sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|438|3|anti-sense MSMS UPN48_class_I_Rep_1 5 528.7930908203125 2 528.791535 1055.56852 NaN NaN NaN NaN NaN NaN NaN 31.365 1 34.899 34.399 35.399 3.5342 0 0 0 0.38417 1 4632 4632 5.7319 0.83484 1 + 32005 29420 20354 20365 36829 36829 0.04295553885413028 PVAKPAPVP 9 Unmodified _PVAKPAPVP_ 0 0 0 ENST00000577672.1_1_1:1656015-1656141:+|nuORF ENST00000577672.1_1_1:1656015-1656141:+|nuORF ENST00000577672.1_1_1:1656015-1656141:+|nuORF MSMS UPN46_class_I_Rep_3 1 438.2728271484375 2 438.271096 874.527639 NaN NaN NaN NaN NaN NaN NaN 103.97 1 103.97 103.47 104.47 0 0 0 0 0.36505 1 25381 25381 7.2892 2.96 1 32006 7534 20355 20366 36830 36830 0.08535580628085881 PVALVSRK 8 Unmodified _PVALVSRK_ 0 0 0 ENST00000338315.4_1_2:24248444-24248828:+|nuORF ENST00000338315.4_1_2:24248444-24248828:+|nuORF ENST00000338315.4_1_2:24248444-24248828:+|nuORF MSMS UPN48_class_I_Rep_2 6 435.28143310546875 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 61.983 1 65.457 64.957 65.957 3.4738 0 0 0 0.40604 1 13813 13813 2.5775 0 1 32007 6217 20356 20367 36831 36831 0.10990385376658196 PVALWWPMH 9 Unmodified _PVALWWPMH_ 0 0 0 REV__L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|253|2|anti-sense REV__L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|253|2|anti-sense MSMS UPN48_class_I_Rep_2 6 568.7902221679688 2 568.78913 1135.56371 NaN NaN NaN NaN NaN NaN NaN 54.132 1 57.713 57.213 58.213 3.5817 0 0 0 0.39326 1 11412 11412 2.3027 0 1 + 32008 30048 20357 20368 36832 36832 0.00134714533260194 PVAVKTLKP 9 Unmodified _PVAVKTLKP_ 0 0 0 nc|ENSG00000111816|P42685-2|FRK;ENSG00000111816|ENST00000606080|FRK nc|ENSG00000111816|P42685-2|FRK nc|ENSG00000111816|P42685-2|FRK MSMS UPN46_class_I_Rep_3 1 476.7944641113281 2 476.813128 951.611703 NaN NaN NaN NaN NaN NaN NaN 73.681 1 73.681 73.181 74.181 0 0 0 0 0.39518 1 17090 17090 1.8442 0 1 32009 1989 20358 20369 36833 36833 0.13396111725000992 PVCHLFFH 8 Unmodified _PVCHLFFH_ 0 0 0 REV__nc|ENSG00000166436|O15016|TRIM66 REV__nc|ENSG00000166436|O15016|TRIM66 MSMS UPN48_class_I_Rep_3 7 500.24871826171875 2 500.247098 998.479642 NaN NaN NaN NaN NaN NaN NaN 81.508 1 85.193 84.693 85.693 3.685 0 0 0 0.40738 1 19298 19298 0.79363 0 1 + 32010 20175 20359 20370 36834 36834 -0.019658165636087688 PVCILRLCIH 10 Unmodified _PVCILRLCIH_ 0 0 0 REV__L1M4a2_dup1376|chr11:46487474-46488173:+|1.1406133342313072|0.0099213259151857|6.85|150.0|42|3|anti-sense REV__L1M4a2_dup1376|chr11:46487474-46488173:+|1.1406133342313072|0.0099213259151857|6.85|150.0|42|3|anti-sense MSMS UPN46_class_I_Rep_3 1 583.8302612304688 2 583.830472 1165.64639 NaN NaN NaN NaN NaN NaN NaN 70.199 1 70.199 69.699 70.699 0 0 0 0 0.53105 1 16121 16121 6.7232 0 1 + 32011 24503 20360 20371 36835 36835 0.07019288269771096 PVCSHCCC 8 Unmodified _PVCSHCCC_ 0 0 0 L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|5|1|sense L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|5|1|sense L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 426.1371154785156 2 426.136987 850.259421 NaN NaN NaN NaN NaN NaN NaN 86.316 1 90.086 89.586 90.586 3.7701 0 0 0 0.40738 1 20495 20495 0.79363 0.10326 1 32012 9784 20361 20372 36836 36836 -0.17169869549354644 PVCVCQLTL 9 Unmodified _PVCVCQLTL_ 0 0 0 REV__MER61B_dup414|chr21:14520583-14520971:+|1.1182135813435636|0.1227739577651658|3.19|151.0|4|1|sense REV__MER61B_dup414|chr21:14520583-14520971:+|1.1182135813435636|0.1227739577651658|3.19|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.2535705566406 2 488.253731 974.492909 0.19348 9.4467E-05 -0.22487 -0.0001098 -0.031394 -1.5328E-05 488.25353197220267 77.241 0.76621 80.51 80.215 80.981 3.269 168 83 3 0 0 0 0.029391 1 19234 19234 57.471 3.8958 1 316730 + 32013 31513 20362 20373 36837 36837 0.004642534334607262 PVDCSNIFSH 10 Unmodified _PVDCSNIFSH_ 0 0 0 REV__ENSG00000149548|ENST00000344762|CCDC15 REV__ENSG00000149548|ENST00000344762|CCDC15 MSMS UPN48_class_I_Rep_3 7 559.75048828125 2 559.750398 1117.48624 NaN NaN NaN NaN NaN NaN NaN 19.113 1 22.701 22.201 23.201 3.5874 0 0 0 0.53105 1 1384 1384 1.4819 0.68827 1 + 32014 19617 20363 20374 36838 36838 -0.06779968193563946 PVDITSPFL 9 Unmodified _PVDITSPFL_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|97|1|anti-sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|97|1|anti-sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|97|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.7710876464844 2 494.771126 987.527698 0.29005 0.00014351 -0.21095 -0.00010437 0.079098 3.9136E-05 494.7710392056051 77.946 0.59685 81.568 81.242 81.838 3.6216 80 64 2 0 0 0 0.40174 1 18485 18485 7.9102 2.6795 1 115660 32015 8399 20364 20375 36839 36839 0.033435358374163116 PVDNLAAEI 9 Unmodified _PVDNLAAEI_ 0 0 0 ENST00000589398.1_1_19:12876641-12878865:-|nuORF;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 ENST00000589398.1_1_19:12876641-12878865:-|nuORF ENST00000589398.1_1_19:12876641-12878865:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 471.25054931640625 2 471.250557 940.486562 0.10774 5.0771E-05 -0.12873 -6.0665E-05 -0.020994 -9.8933E-06 471.25048129465495 47.89 0.44895 51.626 51.528 51.977 3.7361 41 30 2 0 0 0 0.28552 1 9511 9511 14.838 0 1 102650 32016 1407 20365 20376 36840 36840 0.013937747979298365 PVDNLAAEI 9 Unmodified _PVDNLAAEI_ 0 0 0 ENST00000589398.1_1_19:12876641-12878865:-|nuORF;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 ENST00000589398.1_1_19:12876641-12878865:-|nuORF ENST00000589398.1_1_19:12876641-12878865:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 471.250557 940.486562 0.10774 5.0771E-05 -0.12873 -6.0665E-05 -0.020994 -9.8933E-06 471.25048129465495 47.89 0.44895 51.626 51.528 51.977 3.7361 -0.025164 -0.00013007 NaN 14.838 41 30 2 NaN NaN NaN NaN 0 NaN NaN 0 102650 32017 1407 20365 20376 0.013937747979298365 PVDVDEPDLL 10 Unmodified _PVDVDEPDLL_ 0 0 0 REV__ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron REV__ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron MSMS UPN47_class_I_Rep_1 2 556.2887573242188 2 556.279512 1110.54447 NaN NaN NaN NaN NaN NaN NaN 59.147 1 62.564 62.064 63.064 3.4171 0 0 0 0.53105 1 13712 13712 13.906 0 1 + 32018 20646 20366 20377 36841 36841 -0.006380080672670374 PVEQETRPV 9 Unmodified _PVEQETRPV_ 0 0 0 nc|ENSG00000095585|Q8WV28-3|BLNK;nc|ENSG00000095585|Q8WV28-2|BLNK;ENSG00000095585|ENST00000224337|BLNK nc|ENSG00000095585|Q8WV28-3|BLNK nc|ENSG00000095585|Q8WV28-3|BLNK MULTI-MSMS UPN48_class_I_Rep_2 6 528.2789916992188 2 527.780013 1053.54547 0.40841 0.00021555 -2.0188 -0.0010655 -1.6104 -0.00084994 527.7798372106781 31.858 0.34694 35.499 35.339 35.686 3.641 58 33 2 0 0 0 0.47197 1 4896 4896 3.5965 0 1 78639 32019 1415 20367 20378 36842 36842 0.02084251092287559 PVEQPDEM 8 Unmodified _PVEQPDEM_ 0 0 0 REV__L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|7|1|sense REV__L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 472.70489501953125 2 472.705125 943.395698 NaN NaN NaN NaN NaN NaN NaN 90.888 1 94.643 94.143 95.143 3.7554 0 0 0 0.4044 1 21641 21641 4.756 2.1785 1 + 32020 24377 20368 20379 36843 36843 -0.07826437241828899 PVEVVKLE 8 Unmodified _PVEVVKLE_ 0 0 0 ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172 ENST00000507184.5_1_2:27680991-27709067:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF MSMS UPN48_class_I_Rep_1 5 456.77490234375 2 456.773668 911.532783 NaN NaN NaN NaN NaN NaN NaN 58.82 1 62.307 61.807 62.807 3.487 0 0 0 0.36705 1 12869 12869 18.135 4.6271 1 32021 3057 20369 20380 36844 36844 0.07347839700059922 PVEYIRVL 8 Unmodified _PVEYIRVL_ 0 0 0 L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.79486083984375 2 494.794935 987.575317 -0.26552 -0.00013138 0.27528 0.00013621 0.0097631 4.8307E-06 494.7950226733374 36.206 0.97769 39.875 39.534 40.512 3.6692 165 73 3 0 0 0 0.82752 3 6734 6734;6773;6814 36.044 0 1 334060 32022 12708 20370 20381 36845;36846;36847 36845 0.08103234828286077 PVEYIRVL 8 Unmodified _PVEYIRVL_ 0 0 0 L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.79486083984375 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 3 6886 6886;6924;7005 21.747 0 1 349140 32023 12708 20370 20381 36848;36849;36850 36848 0.08103234828286077 PVEYIRVL 8 Unmodified _PVEYIRVL_ 0 0 0 L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.79486083984375 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.82752 2 7011 7011;7051 21.747 0 1 289630 32024 12708 20370 20381 36851;36852 36851 0.08103234828286077 PVEYPNQI 8 Unmodified _PVEYPNQI_ 0 0 0 REV__L1MC3_dup83|chr1:28935935-28937388:-|2.163346246131485|0.014683942820121|7.2|151.0|25|2|sense REV__L1MC3_dup83|chr1:28935935-28937388:-|2.163346246131485|0.014683942820121|7.2|151.0|25|2|sense MSMS UPN47_class_I_Rep_3 4 480.2428283691406 2 480.245275 958.475997 NaN NaN NaN NaN NaN NaN NaN 26.287 1 29.635 29.135 30.135 3.3478 0 0 0 0.40472 1 3822 3822 4.3292 0 1 + 32025 26787 20371 20382 36853 36853 -0.004902078564896328 PVFFYVTK 8 Unmodified _PVFFYVTK_ 0 0 0 REV__L1MC5_dup9405|chr10:63240813-63241044:+|1.155754061335532|0.0051592348994029|7.81|151.0|22|3|anti-sense REV__L1MC5_dup9405|chr10:63240813-63241044:+|1.155754061335532|0.0051592348994029|7.81|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7660827636719 2 500.778754 999.542954 NaN NaN NaN NaN NaN NaN NaN 111.38 1 114.9 114.4 115.4 3.5207 0 0 0 0.40738 1 27340 27340 0.79363 0 1 + 32026 27098 20372 20383 36854 36854 0.043164474252762375 PVFHLFGK 8 Unmodified _PVFHLFGK_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|205|1|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|205|1|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|205|1|anti-sense MSMS UPN47_class_I_Rep_2 3 472.7715759277344 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 111.86 1 115.38 114.88 115.88 3.5226 0 0 0 0.40604 1 27241 27241 2.5775 0 1 32027 13694 20373 20384 36855 36855 0.05395000347948553 PVFHVLER 8 Unmodified _PVFHVLER_ 0 0 0 REV__THE1C-int_dup1668|chr16:15980732-15982256:-|3.1690255609364093|0.0298160016547855|6.73|151.0|7|1|sense REV__THE1C-int_dup1668|chr16:15980732-15982256:-|3.1690255609364093|0.0298160016547855|6.73|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 498.7853088378906 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 114.22 1 117.88 117.38 118.38 3.663 0 0 0 0.40738 1 27291 27291 0.79363 0 1 + 32028 32287 20374 20385 36856 36856 0.05729483888330833 PVFICGLHAKI 11 Unmodified _PVFICGLHAKI_ 0 0 0 REV__Charlie1a_dup3219|chr9:137707932-137709232:-|1.2728724759542318|0.0564827807476747|4.49|151.0|46|1|anti-sense REV__Charlie1a_dup3219|chr9:137707932-137709232:-|1.2728724759542318|0.0564827807476747|4.49|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_1 5 599.3439331054688 2 599.344269 1196.67399 NaN NaN NaN NaN NaN NaN NaN 33.802 1 37.322 36.822 37.822 3.5201 0 0 0 0.38417 1 5323 5323 1.3295 0 1 + 32029 17318 20375 20386 36857 36857 0.08351514801688609 PVFLKLFC 8 Unmodified _PVFLKLFC_ 0 0 0 REV__MER112_dup2104|chr7:139982518-139982764:-|3.115168458717179|0.0259111378668081|6.91|151.0|6|2|sense REV__MER112_dup2104|chr7:139982518-139982764:-|3.115168458717179|0.0259111378668081|6.91|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 483.77569580078125 2 483.777699 965.540846 NaN NaN NaN NaN NaN NaN NaN 56.212 1 59.512 59.012 60.012 3.3009 0 0 0 0.40604 1 12850 12850 2.5775 0 1 + 32030 31075 20376 20387 36858 36858 0.05669695415815568 PVFLKLYQK 9 Unmodified _PVFLKLYQK_ 0 0 0 L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense MSMS UPN47_class_I_Rep_1 2 568.2822265625 2 568.347335 1134.68012 NaN NaN NaN NaN NaN NaN NaN 113.36 1 116.94 116.44 117.44 3.572 0 0 0 0.4007 1 27967 27967 0.52476 0 1 32031 10478 20377 20388 36859 36859 0.11816356304825604 PVFLKLYQK 9 Unmodified _PVFLKLYQK_ 0 0 0 L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense MSMS UPN47_class_I_Rep_1 2 568.8079833984375 2 568.347335 1134.68012 NaN NaN NaN NaN NaN NaN NaN 113.4 1 116.97 116.47 117.47 3.572 0 0 0 0.4007 1 27976 27976 0.52476 0 1 32032 10478 20377 20388 36860 36860 0.11816356304825604 PVFLKLYQK 9 Unmodified _PVFLKLYQK_ 0 0 0 L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 568.2359619140625 2 568.347335 1134.68012 NaN NaN NaN NaN NaN NaN NaN 113.33 1 116.84 116.34 117.34 3.5171 0 0 0 0.4007 1 27561 27561 0.52476 0 1 32033 10478 20377 20388 36861 36861 0.11816356304825604 PVFMVKFV 8 Unmodified _PVFMVKFV_ 0 0 0 REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|87|2|anti-sense REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|87|2|anti-sense MSMS UPN47_class_I_Rep_1 2 483.7889099121094 2 483.777699 965.540846 NaN NaN NaN NaN NaN NaN NaN 114.31 1 117.89 117.39 118.39 3.5809 0 0 0 0.40738 1 28241 28241 0.79363 0 1 + 32034 30713 20378 20389 36862 36862 0.05669695415838305 PVFYVLKL 8 Unmodified _PVFYVLKL_ 0 0 0 REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|58|3|sense REV__MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|58|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.3020324707031 2 489.804771 977.59499 0.25097 0.00012292 -0.24361 -0.00011932 0.0073592 3.6046E-06 489.8059986086263 70.711 0.61015 73.994 73.711 74.321 3.2828 76 57 2 0 0 0 0.82752 1 17292 17292 0.69038 0 1 233860 + 32035 31296 20379 20390 36863 36863 0.10529610839023462 PVHASHLNT 9 Unmodified _PVHASHLNT_ 0 0 0 REV__L1PA3_dup1687|chr3:33671455-33677714:+|2.6229792291023344|0.3076045160087201|3.09|151.0|172|3|sense REV__L1PA3_dup1687|chr3:33671455-33677714:+|2.6229792291023344|0.3076045160087201|3.09|151.0|172|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.2536315917969 2 488.253966 974.493378 0.071424 3.4873E-05 -1.8061 -0.00088186 -1.7347 -0.00084699 488.2530615072733 58.195 0.51848 61.361 61.136 61.655 3.1658 38 30 2 0 0 0 0.25207 1 13509 13509 16.942 1.0951 1 53912 + 32036 29515 20380 20391 36864 36864 0.005111324691824848 PVHMDKRPH 9 Unmodified _PVHMDKRPH_ 0 0 0 MER11D_dup229|chr19:9763869-9764752:+|1.6088152713592898|0.4716488253908613|1.77|151.0|11|2|sense MER11D_dup229|chr19:9763869-9764752:+|1.6088152713592898|0.4716488253908613|1.77|151.0|11|2|sense MER11D_dup229|chr19:9763869-9764752:+|1.6088152713592898|0.4716488253908613|1.77|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 558.76904296875 2 558.790192 1115.56583 NaN NaN NaN NaN NaN NaN NaN 25.235 1 28.985 28.485 29.485 3.7495 0 0 0 0.40038 1 3430 3430 0.6015 0 1 32037 15802 20381 20392 36865 36865 0.012671432711158559 PVHVIAIEEL 10 Unmodified _PVHVIAIEEL_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|138|3|sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|138|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.32373046875 2 560.324057 1118.63356 0.47816 0.00026792 -0.085111 -4.769E-05 0.39305 0.00022023 560.3239979094155 70.079 0.6118 73.592 73.257 73.869 3.5128 78 50 2 0 0 0 0.51003 1 16155 16155 10.824 10.824 1 294850 + 32038 23718 20382 20393 36866 36866 0.07898871682891695 PVICGLQTFF 10 Unmodified _PVICGLQTFF_ 0 0 0 L1ME4b_dup14705|chr12:12731502-12731680:+|1.0938602244766291|0.027120965954416|5.33|151.0|14|3|anti-sense L1ME4b_dup14705|chr12:12731502-12731680:+|1.0938602244766291|0.027120965954416|5.33|151.0|14|3|anti-sense L1ME4b_dup14705|chr12:12731502-12731680:+|1.0938602244766291|0.027120965954416|5.33|151.0|14|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 562.29296875 2 562.794078 1123.5736 0.28205 0.00015874 0.83406 0.00046941 1.1161 0.00062814 562.7946628784928 54.171 0.24938 57.74 57.589 57.839 3.5694 21 14 2 0 0 0 0.84575 1 11325 11325 1.8442 0 1 132140 32039 12889 20383 20394 36867 36867 0.016758577480004533 PVILEHFRK 9 Unmodified _PVILEHFRK_ 0 0 0 REV__THE1B_dup17148|chr12:104509076-104509400:+|1.8941990391201824|0.0034293955192508|9.11|151.0|13|1|anti-sense REV__THE1B_dup17148|chr12:104509076-104509400:+|1.8941990391201824|0.0034293955192508|9.11|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_2 6 570.2636108398438 2 569.840208 1137.66586 NaN NaN NaN NaN NaN NaN NaN 24.31 1 27.95 27.45 28.45 3.6397 0 0 0 0.4007 1 2801 2801 0.52476 0.066424 1 + 32040 32229 20384 20395 36868 36868 0.10253703876537656 PVILLTFLCRV 11 Unmodified _PVILLTFLCRV_ 0 0 0 REV__L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|135|3|anti-sense REV__L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|135|3|anti-sense MSMS UPN46_class_I_Rep_3 1 637.38623046875 2 637.388677 1272.7628 NaN NaN NaN NaN NaN NaN NaN 108.7 1 108.7 108.2 109.2 0 0 0 0 0.38417 1 26601 26601 4.897 1.9018 1 + 32041 25877 20385 20396 36869 36869 0.13732930041305735 PVIPAIYRL 9 Unmodified _PVIPAIYRL_ 0 0 0 AluSz_dup41217|chr7:128536025-128536319:-|1.0645929543562112|0.0106129590090114|6.65|151.0|2|1|sense AluSz_dup41217|chr7:128536025-128536319:-|1.0645929543562112|0.0106129590090114|6.65|151.0|2|1|sense AluSz_dup41217|chr7:128536025-128536319:-|1.0645929543562112|0.0106129590090114|6.65|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 520.8546142578125 2 521.326402 1040.63825 NaN NaN NaN NaN NaN NaN NaN 108.93 1 112.46 111.96 112.96 3.5333 0 0 0 0.38478 1 26494 26494 4.3292 0 1 32042 350 20386 20397 36870 36870 0.11955800616328816 PVKKEPVPVT 10 Unmodified _PVKKEPVPVT_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN47_class_I_Rep_3 4 547.3323974609375 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 69.425 1 72.629 72.129 73.129 3.2044 0 0 0 0.53105 1 16927 16927 1.4819 0 1 32043 3707 20387 20398 36871 36871 0.11167462062576305 PVKQGLLIL 9 Unmodified _PVKQGLLIL_ 0 0 0 REV__MER45A_dup2678|chr15:49980676-49980852:-|1.0369212129375518|0.0304342874238631|5.09|150.0|5|3|sense REV__MER45A_dup2678|chr15:49980676-49980852:-|1.0369212129375518|0.0304342874238631|5.09|150.0|5|3|sense MSMS UPN48_class_I_Rep_1 5 490.7816162109375 2 490.828778 979.643003 NaN NaN NaN NaN NaN NaN NaN 20.934 1 24.48 23.98 24.98 3.5454 0 0 0 0.4029 1 1841 1841 0 0 1 + 32044 31328 20388 20399 36872 36872 0.15236684759111085 PVKRQAGRN 9 Unmodified _PVKRQAGRN_ 0 0 0 L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|4|1|sense L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|4|1|sense L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.3016967773438 2 513.301781 1024.58901 -0.61069 -0.00031347 0.17238 8.8483E-05 -0.43831 -0.00022499 513.3018688679009 12.104 0.11538 15.479 15.396 15.511 3.3753 19 15 2 0 0 0 0.48846 1 19 19 1.8442 1.8442 1 22618 32045 11413 20389 20400 36873 36873 0.07769905380087039 PVKRVKKP 8 Unmodified _PVKRVKKP_ 0 0 0 REV__nc|ENSG00000071564|P15923-2|TCF3 REV__nc|ENSG00000071564|P15923-2|TCF3 MULTI-MSMS UPN46_class_I_Rep_3 1 476.3265380859375 2 476.326737 950.63892 0.13781 6.5642E-05 -0.34368 -0.0001637 -0.20587 -9.806E-05 476.3265054231859 36.449 0.088406 36.449 36.378 36.467 0 8 6 2 0 0 0 0.82752 1 6757 6757 0.69038 0 1 127420 + 32046 17814 20390 20401 36874 36874 0.161626400560408 PVKVPVRS 8 Unmodified _PVKVPVRS_ 0 0 0 REV__ENST00000375311.1_1_10:31138210-31139252:-|nuORF REV__ENST00000375311.1_1_10:31138210-31139252:-|nuORF MSMS UPN48_class_I_Rep_2 6 441.29766845703125 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 69.39 1 72.912 72.412 73.412 3.5216 0 0 0 0.40746 1 16072 16072 0.69038 0 1 + 32047 22009 20391 20402 36875 36875 0.10438385376664883 PVLCLKPKTL 10 Unmodified _PVLCLKPKTL_ 0 0 0 L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|381|3|anti-sense L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|381|3|anti-sense L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|381|3|anti-sense MSMS UPN46_class_I_Rep_3 1 556.3504638671875 2 556.34902 1110.68349 NaN NaN NaN NaN NaN NaN NaN 12.413 1 12.413 11.913 12.913 0 0 0 0 0.53105 1 107 107 0.40072 0 1 32048 14924 20392 20403 36876 36876 0.13257283087204996 PVLCLKPW 8 Unmodified _PVLCLKPW_ 0 0 0 L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|126|2|anti-sense L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|126|2|anti-sense L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|126|2|anti-sense MSMS UPN47_class_I_Rep_2 3 478.27532958984375 2 478.275324 954.536095 NaN NaN NaN NaN NaN NaN NaN 60.862 1 64.128 63.628 64.628 3.2654 0 0 0 0.40581 1 14266 14266 2.8892 0 1 32049 13524 20393 20404 36877 36877 0.057008112730500216 PVLEKRGLHA 10 Unmodified _PVLEKRGLHA_ 0 0 0 L1MB3_dup12136|chr12:120872293-120872729:+|1.5284715032437488|0.0069088108609672|7.79|151.0|8|2|sense L1MB3_dup12136|chr12:120872293-120872729:+|1.5284715032437488|0.0069088108609672|7.79|151.0|8|2|sense L1MB3_dup12136|chr12:120872293-120872729:+|1.5284715032437488|0.0069088108609672|7.79|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.3168334960938 2 560.33529 1118.65603 0.47419 0.0002657 -0.42875 -0.00024025 0.045434 2.5458E-05 560.3350046854174 41.45 0.37266 44.956 44.663 45.036 3.506 37 29 2 0 0 0 0.55983 1 7541 7541 3.9444 1.6417 1 90496 32050 10324 20394 20405 36878 36878 0.10144515871184012 PVLFHPNR 8 Unmodified _PVLFHPNR_ 0 0 0 L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|83|3|anti-sense L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|83|3|anti-sense L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|83|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.2754211425781 2 490.277244 978.539935 NaN NaN NaN NaN NaN NaN NaN 63.855 1 67.211 66.711 67.711 3.3557 0 0 0 0.40738 1 15136 15136 0.79363 0 1 32051 10541 20395 20406 36879 36879 0.049806170911210756 PVLGPAPLTEL 11 Unmodified _PVLGPAPLTEL_ 0 0 0 ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11 ENST00000465385.5_1_22:24122222-24125728:+|nuORF ENST00000465385.5_1_22:24122222-24125728:+|nuORF MSMS UPN48_class_I_Rep_1 5 553.8272705078125 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 67.559 1 71.011 70.511 71.511 3.4516 0 0 0 0.38417 1 15537 15537 1.4819 0 1 32052 1454 20396 20407 36880 36880 0.08971755825632499 PVLINAAEII 10 Unmodified _PVLINAAEII_ 0 0 0 nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15 nc|ENSG00000164338|Q8TED0-2|UTP15 nc|ENSG00000164338|Q8TED0-2|UTP15 MULTI-MSMS UPN47_class_I_Rep_1 2 526.8218383789062 2 526.82115 1051.62775 0.44621 0.00023507 1.0924 0.00057549 1.5386 0.00081056 526.8215816765266 112.55 0.060562 116.12 116.09 116.15 3.572 14 5 4 0 0 0 0.54466 1 27754 27754 6.2058 0 1 1479800 32053 4107 20397 20408 36881 36881 0.10399773171229754 PVLINAAEII 10 Unmodified _PVLINAAEII_ 0 0 0 nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15 nc|ENSG00000164338|Q8TED0-2|UTP15 nc|ENSG00000164338|Q8TED0-2|UTP15 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 526.82115 1051.62775 0.44621 0.00023507 1.0924 0.00057549 1.5386 0.00081056 526.8215816765266 112.55 0.060562 116.12 116.09 116.15 3.572 0 0 NaN 6.2058 14 5 4 NaN NaN NaN NaN 0 NaN NaN 0 1479800 32054 4107 20397 20408 0.10399773171229754 PVLKKVKV 8 Unmodified _PVLKKVKV_ 0 0 0 L1MC4_dup19667|chr14:95424488-95424901:+|1.374246875713155|0.0263451149799863|5.7|151.0|8|2|sense L1MC4_dup19667|chr14:95424488-95424901:+|1.374246875713155|0.0263451149799863|5.7|151.0|8|2|sense L1MC4_dup19667|chr14:95424488-95424901:+|1.374246875713155|0.0263451149799863|5.7|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 455.82452392578125 2 455.826038 909.637523 NaN NaN NaN NaN NaN NaN NaN 18.831 1 18.831 18.331 19.331 0 0 0 0 0.40746 1 1703 1703 0.69038 0.69038 1 32055 11437 20398 20409 36882 36882 0.17909005967271696 PVLRGGGR 8 Unmodified _PVLRGGGR_ 0 0 0 ENST00000543732.1_1_11:60692691-60692868:+|nuORF ENST00000543732.1_1_11:60692691-60692868:+|nuORF ENST00000543732.1_1_11:60692691-60692868:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2490539550781 2 406.248486 810.48242 -0.64145 -0.00026059 1.3932 0.00056598 0.75174 0.00030539 406.24902488673104 81.972 0.1922 85.295 85.261 85.453 3.3231 38 23 2 0 0 0 0.82752 1 20559 20559 0.69038 0 1 104180 32056 7363 20399 20410 36883 36883 0.06959774885569914 PVLRGGGR 8 Unmodified _PVLRGGGR_ 0 0 0 ENST00000543732.1_1_11:60692691-60692868:+|nuORF ENST00000543732.1_1_11:60692691-60692868:+|nuORF ENST00000543732.1_1_11:60692691-60692868:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 406.248486 810.48242 -0.52821 -0.00021459 1.3842 0.00056233 0.85599 0.00034775 406.2491066401907 81.887 0.26323 85.271 85.162 85.425 3.3839 -0.026812 9.7657E-05 NaN 0.69038 45 30 2 NaN NaN NaN NaN 0 NaN NaN 0 119110 32057 7363 20399 20410 0.06959774885569914 PVLRPYQREA 10 Unmodified _PVLRPYQREA_ 0 0 0 nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH nc|ENSG00000146414|Q149N8-2|SHPRH nc|ENSG00000146414|Q149N8-2|SHPRH MULTI-MSMS UPN47_class_I_Rep_1 2 410.2313537597656 3 410.231412 1227.67241 0.094681 3.8841E-05 0.16143 6.6222E-05 0.25611 0.00010506 410.23136036325445 104.82 0.66766 108.56 108.47 109.14 3.7395 154 102 2 0 0 0 0.56296 1 25863 25863 1.7423 1.7423 1 10357000 32058 3437 20400 20411 36884 36884 0.0676759703726475 PVLRRKLIQAK 11 Unmodified _PVLRRKLIQAK_ 0 0 0 REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS UPN47_class_I_Rep_2 3 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 46.249 1 49.601 49.101 50.101 3.3515 0 0 0 0.38417 1 9821 9821 1.4551 0.94916 1 + 32059 21978 20401 20412 36885 36885 0.22417277055842533 PVLRRKLIQAK 11 Unmodified _PVLRRKLIQAK_ 0 0 0 REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS UPN47_class_I_Rep_2 3 441.3070983886719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 46.545 1 49.896 49.396 50.396 3.3515 0 0 0 0.38417 1 9911 9911 1.4551 0.94916 1 + 32060 21978 20401 20412 36886 36886 0.22417277055842533 PVLRRKLIQAK 11 Unmodified _PVLRRKLIQAK_ 0 0 0 REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS UPN47_class_I_Rep_2 3 441.3072204589844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 46.642 1 49.993 49.493 50.493 3.3515 0 0 0 0.38417 1 9941 9941 1.4551 0.94916 1 + 32061 21978 20401 20412 36887 36887 0.22417277055842533 PVLRYAIQY 9 Unmodified _PVLRYAIQY_ 0 0 0 CON__P01044-1;CON__Q2KJ62;CON__P01045-1 CON__P01044-1 CON__P01044-1 MULTI-MSMS UPN48_class_I_Rep_2 6 561.8197021484375 2 561.818941 1121.62333 0.42035 0.00023616 -0.047891 -2.6906E-05 0.37246 0.00020926 561.8187963974133 48.994 1.2903 52.711 52.149 53.439 3.7175 216 88 3 0 0 0 0.46434 1 10052 10052 4.3292 1.8308 1 834470 + 32062 632 20402 20413 36888 36888 0.06738308748322197 PVLSLPVRRG 10 Unmodified _PVLSLPVRRG_ 0 0 0 nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-3|ALKBH5 nc|ENSG00000091542|Q6P6C2-3|ALKBH5 MSMS UPN47_class_I_Rep_3 4 547.3431396484375 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 92.769 1 96.172 95.672 96.672 3.4034 0 0 0 0.53105 1 23152 23152 3.2813 0 1 32063 1376 20403 20414 36889 36889 0.13413106250823148 PVLSLPVRRG 10 Unmodified _PVLSLPVRRG_ 0 0 0 nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-3|ALKBH5 nc|ENSG00000091542|Q6P6C2-3|ALKBH5 MSMS UPN48_class_I_Rep_3 7 547.3453979492188 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 94.299 1 98.201 97.701 98.701 3.9016 0 0 0 0.53105 1 22347 22347 1.3295 0 1 32064 1376 20403 20414 36890 36890 0.13413106250823148 PVLSMLLKM 9 Unmodified _PVLSMLLKM_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|241|2|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|241|2|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|241|2|anti-sense MSMS UPN46_class_I_Rep_3 1 516.3032836914062 2 516.303224 1030.5919 NaN NaN NaN NaN NaN NaN NaN 22.587 1 22.587 22.087 23.087 0 0 0 0 0.39428 1 2708 2708 2.0598 0 1 32065 9729 20404 20415 36891 36891 0.07782276398370414 PVLYWAGT 8 Unmodified _PVLYWAGT_ 0 0 0 REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|247|1|anti-sense REV__HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|247|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 454.2414855957031 2 453.739628 905.464704 0.1609 7.3006E-05 0.36984 0.00016781 0.53074 0.00024082 453.73970493527383 104.43 0.15637 108.13 108.01 108.17 3.6991 37 23 2 0 0 0 0.82752 1 24704 24704 2.5775 0 1 5475600 + 32066 23605 20405 20416 36892 36892 0.008190148400558428 PVMENNFVDL 10 Unmodified _PVMENNFVDL_ 0 0 0 ENST00000466133.1_1_3:159820071-159820575:+|nuORF;ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7 ENST00000466133.1_1_3:159820071-159820575:+|nuORF ENST00000466133.1_1_3:159820071-159820575:+|nuORF MSMS UPN47_class_I_Rep_3 4 589.2830200195312 2 589.281531 1176.54851 NaN NaN NaN NaN NaN NaN NaN 81.183 1 84.507 84.007 85.007 3.3231 0 0 0 0.53105 1 20313 20313 1.3295 0 1 32067 4221 20406 20417 36893 36893 -0.032702418452117854 PVMHRKRW 8 Unmodified _PVMHRKRW_ 0 0 0 REV__L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|27|1|sense REV__L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|27|1|sense MSMS UPN48_class_I_Rep_3 7 555.309814453125 2 555.311095 1108.60764 NaN NaN NaN NaN NaN NaN NaN 66.206 1 69.714 69.214 70.214 3.5077 0 0 0 0.40738 1 15021 15021 0.79363 0.10326 1 + 32068 24108 20407 20418 36894 36894 0.057677437502889006 PVMISYFSYV 10 Unmodified _PVMISYFSYV_ 0 0 0 L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|251|2|anti-sense L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|251|2|anti-sense L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|251|2|anti-sense MSMS UPN47_class_I_Rep_3 4 603.3001708984375 2 603.299193 1204.58383 NaN NaN NaN NaN NaN NaN NaN 53.963 1 57.149 56.649 57.649 3.1856 0 0 0 0.53105 1 12214 12214 1.6526 0.17072 1 32069 14836 20408 20419 36895 36895 -0.0102757931740598 PVMLFIMS 8 Unmodified _PVMLFIMS_ 0 0 0 REV__Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|102|3|anti-sense REV__Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|102|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 469.7790222167969 2 469.247917 936.481282 0.2372 0.00011131 -0.77456 -0.00036346 -0.53736 -0.00025215 469.2474124334659 87.541 0.40741 87.541 87.258 87.666 0 48 35 2 0 0 0 0.82752 1 20973 20973 5.7604 0.52976 1 262000 + 32070 32679 20409 20420 36896 36896 0.01050056410133493 PVMMSFVSY 9 Unmodified _PVMMSFVSY_ 0 0 0 L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|221|2|anti-sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|221|2|anti-sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|221|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.7459106445312 2 530.745739 1059.47692 0.29637 0.0001573 -0.37401 -0.00019851 -0.077645 -4.121E-05 530.7454238137406 59.503 0.30914 62.668 62.442 62.751 3.1651 28 21 2 0 0 0 0.26948 1 13905 13905 15.847 0 1 73841 32071 14875 20410 20421 36897 36897 -0.05043452803420223 PVMMSFVSY 9 Unmodified _PVMMSFVSY_ 0 0 0 L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|221|2|anti-sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|221|2|anti-sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|221|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 530.3142700195312 2 530.745739 1059.47692 0.29637 0.0001573 -0.37401 -0.00019851 -0.077645 -4.121E-05 530.7454238137406 59.503 0.30914 62.668 62.442 62.751 3.1651 28 21 2 0 0 0 0.10699 1 13925 13925 15.847 0 1 73841 32072 14875 20410 20421 36898 36898 -0.05043452803420223 PVNEKLHEI 9 Unmodified _PVNEKLHEI_ 0 0 0 REV__nc|ENSG00000154839|Q96BD8-2|SKA1 REV__nc|ENSG00000154839|Q96BD8-2|SKA1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.797607421875 2 539.798206 1077.58186 0.368 0.00019865 -0.1916 -0.00010342 0.1764 9.5223E-05 539.7980552970906 47.087 0.76331 50.606 50.211 50.974 3.5192 114 50 3 0 0 0 0.28552 1 9176 9176 14.838 0 1 573110 + 32073 19749 20411 20422 36899 36899 0.046171279889904326 PVNKKFVH 8 Unmodified _PVNKKFVH_ 0 0 0 REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF MSMS UPN47_class_I_Rep_1 2 484.78802490234375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 40.17 1 43.836 43.336 44.336 3.6668 0 0 0 0.40604 1 7936 7936 2.5775 0 1 + 32074 22401 20412 20423 36900 36900 0.07525787750944346 PVNKLLKIY 9 Unmodified _PVNKLLKIY_ 0 0 0 nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8 nc|ENSG00000227942|Q9BZ68|FRMD8P1 nc|ENSG00000227942|Q9BZ68|FRMD8P1 MSMS UPN48_class_I_Rep_1 5 544.349609375 2 544.347335 1086.68012 NaN NaN NaN NaN NaN NaN NaN 74.946 1 78.436 77.936 78.936 3.49 0 0 0 0.38478 1 17733 17733 4.3292 0 1 32075 2532 20413 20424 36901 36901 0.1402435630486707 PVNNLWLFL 9 Unmodified _PVNNLWLFL_ 0 0 0 REV__L1MB5_dup6039|chr11:73090763-73091255:-|1.1342541194271705|0.0064368202156392|7.46|151.0|26|1|anti-sense REV__L1MB5_dup6039|chr11:73090763-73091255:-|1.1342541194271705|0.0064368202156392|7.46|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.3175048828125 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 46.818 1 50.17 49.67 50.67 3.3515 0 0 0 0.38299 1 9995 9995 4.756 2.0208 1 + 32076 26086 20414 20425 36902 36902 0.06479210236648214 PVNNLWLFL 9 Unmodified _PVNNLWLFL_ 0 0 0 REV__L1MB5_dup6039|chr11:73090763-73091255:-|1.1342541194271705|0.0064368202156392|7.46|151.0|26|1|anti-sense REV__L1MB5_dup6039|chr11:73090763-73091255:-|1.1342541194271705|0.0064368202156392|7.46|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2804565429688 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 47.015 1 50.366 49.866 50.866 3.3515 0 0 0 0.39428 1 10056 10056 2.0598 0.57785 1 + 32077 26086 20414 20425 36903 36903 0.06479210236648214 PVPCARLN 8 Unmodified _PVPCARLN_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MSMS UPN48_class_I_Rep_3 7 435.2507019042969 2 435.23673 868.458907 NaN NaN NaN NaN NaN NaN NaN 70.073 1 73.586 73.086 74.086 3.5128 0 0 0 0.40625 1 16189 16189 2.3027 0 1 + 32078 32092 20415 20426 36904 36904 0.019415930567106443 PVPEHLSQCQ 10 Unmodified _PVPEHLSQCQ_ 0 0 0 nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26 nc|ENSG00000072121|Q68DK2-4|ZFYVE26 nc|ENSG00000072121|Q68DK2-4|ZFYVE26 MSMS UPN48_class_I_Rep_2 6 569.2479858398438 2 569.271498 1136.52844 NaN NaN NaN NaN NaN NaN NaN 30.778 1 34.413 33.913 34.913 3.6351 0 0 0 0.53105 1 4553 4553 1.3295 0.13619 1 32079 1097 20416 20427 36905 36905 -0.034359927851937755 PVPGAKKL 8 Unmodified _PVPGAKKL_ 0 0 0 MER1B_dup554|chr2:74085529-74085794:-|1.4185502595303172|0.0190695741594577|6.22|151.0|4|2|sense MER1B_dup554|chr2:74085529-74085794:-|1.4185502595303172|0.0190695741594577|6.22|151.0|4|2|sense MER1B_dup554|chr2:74085529-74085794:-|1.4185502595303172|0.0190695741594577|6.22|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 404.7926330566406 2 405.265813 808.517074 NaN NaN NaN NaN NaN NaN NaN 75.095 1 78.408 77.908 78.908 3.3127 0 0 0 0.40738 1 18527 18527 0.79363 0 1 32080 15820 20417 20428 36906 36906 0.1051559797366508 PVPKVSSL 8 Unmodified _PVPKVSSL_ 0 0 0 REV__MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|5|1|sense REV__MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 413.75396728515625 2 413.755278 825.496004 NaN NaN NaN NaN NaN NaN NaN 79.645 1 79.645 79.145 80.145 0 0 0 0 0.39819 1 18720 18720 8.5933 0 1 + 32081 31130 20418 20429 36907 36907 0.07627587874151232 PVPLHLRRH 9 Unmodified _PVPLHLRRH_ 0 0 0 REV__ENST00000301015.13_2_16:88800318-88802577:-|nuORF REV__ENST00000301015.13_2_16:88800318-88802577:-|nuORF MSMS UPN48_class_I_Rep_3 7 562.8455200195312 2 562.843616 1123.67268 NaN NaN NaN NaN NaN NaN NaN 81.686 1 85.371 84.871 85.871 3.685 0 0 0 0.40038 1 19345 19345 0.6015 0 1 + 32082 21671 20419 20430 36908 36908 0.11579061547809033 PVPLPVPRA 9 Unmodified _PVPLPVPRA_ 0 0 0 REV__nc|ENSG00000162599|Q12857-2|NFIA REV__nc|ENSG00000162599|Q12857-2|NFIA MSMS UPN46_class_I_Rep_3 1 473.2991943359375 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 107 1 107 106.5 107.5 0 0 0 0 0.38299 1 26102 26102 4.756 0.42677 1 + 32083 19930 20420 20431 36909 36909 0.10622958410749561 PVPMDVILDL 10 Unmodified _PVPMDVILDL_ 0 0 0 REV__MLT1I_dup4275|chr6:72743844-72744252:-|1.268701322539277|0.0042345495206063|8.23|148.0|11|3|sense REV__MLT1I_dup4275|chr6:72743844-72744252:-|1.268701322539277|0.0042345495206063|8.23|148.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 556.3076782226562 2 556.307018 1110.59948 NaN NaN NaN NaN NaN NaN NaN 85.379 1 85.379 84.879 85.879 0 0 0 0 0.53105 1 20366 20366 1.6526 0.17072 1 + 32084 31767 20421 20432 36910 36910 0.04860707199645731 PVPMLVFV 8 Unmodified _PVPMLVFV_ 0 0 0 REV__L1MB7_dup8001|chr6:136767660-136768631:+|2.8047632359114405|0.0215211623248441|7.03|151.0|70|3|anti-sense REV__L1MB7_dup8001|chr6:136767660-136768631:+|2.8047632359114405|0.0215211623248441|7.03|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_2 3 451.26318359375 2 451.264425 900.514297 NaN NaN NaN NaN NaN NaN NaN 26.238 1 29.732 29.232 30.232 3.4945 0 0 0 0.40738 1 3766 3766 0.79363 0 1 + 32085 26313 20422 20433 36911 36911 0.06006006524489749 PVPSAWPSLAL 11 Unmodified _PVPSAWPSLAL_ 0 0 0 REV__Tigger1_dup9407|chr12:132629257-132630307:-|1.913198795371949|0.2724773429483796|2.81|151.0|5|1|sense REV__Tigger1_dup9407|chr12:132629257-132630307:-|1.913198795371949|0.2724773429483796|2.81|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 569.3164672851562 2 569.318774 1136.623 NaN NaN NaN NaN NaN NaN NaN 54.187 1 57.701 57.201 58.201 3.5143 0 0 0 0.38417 1 11448 11448 4.897 2.1618 1 + 32086 32568 20423 20434 36912 36912 0.06014889028460857 PVPSDWPRHAG 11 Unmodified _PVPSDWPRHAG_ 0 0 0 REV__ENST00000575838.1_1_16:69760959-69776116:+|nuORF REV__ENST00000575838.1_1_16:69760959-69776116:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 407.1840515136719 3 406.871995 1217.59415 -1.3958 -0.00056792 -2.4981 -0.0010164 -3.8939 -0.0015843 407.2042541861752 23.801 0.060545 27.152 27.127 27.187 3.3509 6 4 2 0 0 0 22.551 1 3098 3098 1.3296 0.36737 1 16944 + 32087 23107 20424 20435 36913 36913 -0.005938355479429447 PVPVFKRK 8 Unmodified _PVPVFKRK_ 0 0 0 ENSG00000156234|ENST00000682537|CXCL13 ENSG00000156234|ENST00000682537|CXCL13 ENSG00000156234|ENST00000682537|CXCL13 MSMS UPN47_class_I_Rep_2 3 485.8118896484375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 79.121 1 82.477 81.977 82.977 3.3554 0 0 0 0.40738 1 19681 19681 0.79363 0.10326 1 32088 3727 20425 20436 36914 36914 0.12634951164704944 PVQAPPAPVI 10 Unmodified _PVQAPPAPVI_ 0 0 0 nc|ENSG00000091527|Q9UKY7-3|CDV3;nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 MULTI-MSMS UPN47_class_I_Rep_1 2 494.7948913574219 2 494.794935 987.575317 -0.26552 -0.00013138 0.27528 0.00013621 0.0097631 4.8307E-06 494.7950226733374 36.206 0.97769 39.875 39.534 40.512 3.6692 165 73 3 0 0 0 0.54822 1 6919 6919 5.7319 0.97584 1 334060 32089 1374 20426 20437 36915 36915 0.08103234828263339 PVQAPPAPVI 10 Unmodified _PVQAPPAPVI_ 0 0 0 nc|ENSG00000091527|Q9UKY7-3|CDV3;nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 MULTI-MSMS UPN47_class_I_Rep_3 4 494.7950744628906 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.54822 1 7187 7187 5.7319 0.97584 1 289630 32090 1374 20426 20437 36916 36916 0.08103234828263339 PVQETGLLNY 10 Unmodified _PVQETGLLNY_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|125|3|sense;HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|14|1|sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|125|3|sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|125|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.7843627929688 2 567.295496 1132.57644 0.53247 0.00030207 -0.073406 -4.1643E-05 0.45906 0.00026043 567.2953709262758 52.646 0.80357 56.285 55.971 56.775 3.639 135 53 3 0 0 0 0.46161 1 11066 11066 14.838 3.198 1 635870 32091 8237 20427 20438 36917 36917 0.015454044065336348 PVRFVKTLE 9 Unmodified _PVRFVKTLE_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN46_class_I_Rep_3 1 544.8253173828125 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 93.126 1 93.126 92.626 93.626 0 0 0 0 0.3967 1 22560 22560 1.4819 0.68827 1 32092 3707 20428 20439 36918 36918 0.09866595265384603 PVRIGICCV 9 Unmodified _PVRIGICCV_ 0 0 0 REV__L1PA8_dup1882|chr4:48695607-48696698:+|1.0997685570738025|0.0103842939453217|6.73|151.0|39|1|anti-sense REV__L1PA8_dup1882|chr4:48695607-48696698:+|1.0997685570738025|0.0103842939453217|6.73|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_3 7 480.26116943359375 2 480.26189 958.509228 NaN NaN NaN NaN NaN NaN NaN 32.234 1 35.936 35.436 36.436 3.7015 0 0 0 0.39326 1 4871 4871 2.3027 1.5091 1 + 32093 30207 20429 20440 36919 36919 0.02831379390215716 PVRKGRQF 8 Unmodified _PVRKGRQF_ 0 0 0 LTR49-int_dup1886|chr19:41555324-41556298:-|1.1525040553464632|0.1156285719040193|3.32|151.0|15|2|sense LTR49-int_dup1886|chr19:41555324-41556298:-|1.1525040553464632|0.1156285719040193|3.32|151.0|15|2|sense LTR49-int_dup1886|chr19:41555324-41556298:-|1.1525040553464632|0.1156285719040193|3.32|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 494.3478088378906 2 494.295968 986.577383 NaN NaN NaN NaN NaN NaN NaN 102.9 1 106.61 106.11 107.11 3.7108 0 0 0 0.40746 1 24366 24366 0.69038 0 1 32094 15665 20430 20441 36920 36920 0.08355708356759806 PVRKPGPLP 9 Unmodified _PVRKPGPLP_ 0 0 0 nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB nc|ENSG00000186260|Q9ULH7-4|MRTFB nc|ENSG00000186260|Q9ULH7-4|MRTFB MSMS UPN46_class_I_Rep_3 1 480.80126953125 2 480.803094 959.591636 NaN NaN NaN NaN NaN NaN NaN 90.536 1 90.536 90.036 91.036 0 0 0 0 0.38478 1 21836 21836 4.3292 0 1 32095 5150 20431 20442 36921 36921 0.1102236078503438 PVRLQPSTK 9 Unmodified _PVRLQPSTK_ 0 0 0 REV__ENSG00000272333|ENST00000420124|KMT2B REV__ENSG00000272333|ENST00000420124|KMT2B MULTI-SECPEP UPN47_class_I_Rep_2 3 513.2854614257812 2 513.308741 1024.60293 0.18575 9.5346E-05 -3.6807 -0.0018894 -3.495 -0.001794 513.3069395436813 57.468 0.084911 60.76 60.702 60.787 3.2912 11 7 2 0 0 0 0.12099 1 13242 13242 6.7232 0 1 72714 + 32096 21421 20432 20443 36922 36922 0.0916113808850696 PVRNKARQF 9 Unmodified _PVRNKARQF_ 0 0 0 REV__ENST00000572418.1_1_17:3806502-3807261:-|nuORF REV__ENST00000572418.1_1_17:3806502-3807261:-|nuORF MSMS UPN48_class_I_Rep_2 6 558.3247680664062 2 558.325257 1114.63596 NaN NaN NaN NaN NaN NaN NaN 90.774 1 94.529 94.029 95.029 3.7554 0 0 0 0.4007 1 21618 21618 0.52476 0 1 + 32097 23094 20433 20444 36923 36923 0.08322764931222082 PVRRQRGRR 9 Unmodified _PVRRQRGRR_ 0 0 0 nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 MSMS UPN46_class_I_Rep_3 1 590.8663330078125 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 99.606 1 99.606 99.106 100.11 0 0 0 0 0.4007 1 24271 24271 0.52476 0 1 32098 3005 20434 20445 36924 36924 0.13466885413845375 PVRRQRGRR 9 Unmodified _PVRRQRGRR_ 0 0 0 nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 MSMS UPN46_class_I_Rep_3 1 590.8670043945312 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 99.738 1 99.738 99.238 100.24 0 0 0 0 0.4007 1 24306 24306 0.52476 0 1 32099 3005 20434 20445 36925 36925 0.13466885413845375 PVRRQRGRR 9 Unmodified _PVRRQRGRR_ 0 0 0 nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 MSMS UPN48_class_I_Rep_1 5 590.8658447265625 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 96.107 1 99.719 99.219 100.22 3.6124 0 0 0 0.4007 1 23146 23146 0.52476 0 1 32100 3005 20434 20445 36926 36926 0.13466885413845375 PVRRQRGRR 9 Unmodified _PVRRQRGRR_ 0 0 0 nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 nc|ENSG00000137075|Q9H0F5-3|RNF38 MSMS UPN48_class_I_Rep_2 6 590.8668212890625 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 95.846 1 99.626 99.126 100.13 3.7804 0 0 0 0.4007 1 22770 22770 0.52476 0 1 32101 3005 20434 20445 36927 36927 0.13466885413845375 PVRRSLPAP 9 Unmodified _PVRRSLPAP_ 0 0 0 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 MULTI-MSMS UPN48_class_I_Rep_1 5 496.80364990234375 2 496.803626 991.592698 0.17732 8.8093E-05 0.25754 0.00012795 0.43486 0.00021604 496.8036980019965 107.81 0.40687 111.44 111.35 111.76 3.6313 96 35 5 0 0 0 0.35081 1 26047 26047 10.824 0 1 157380000 32102 1891 20435 20446 36928 36928 0.09656575153940139 PVSCILRAKLF 11 Unmodified _PVSCILRAKLF_ 0 0 0 REV__SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant REV__SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant MULTI-SECPEP UPN48_class_I_Rep_1 5 415.89544677734375 3 416.249526 1245.72675 -0.13652 -5.6826E-05 0.29054 0.00012094 0.15403 6.4113E-05 416.24951920009033 96.93 0.26853 100.54 100.38 100.65 3.6088 33 31 2 0 0 0 22.551 1 23345 23345 0.40827 0.17242 1 87000 + 32103 17849 20436 20447 36929 36929 0.11371472864470888 PVSCILRAKLF 11 Unmodified _PVSCILRAKLF_ 0 0 0 REV__SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant REV__SEMA3A|p.Q640Sfs*23|1|0.06|ENSG00000075213|chr7:83961769-83961770|-/A|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_3 7 3 416.249526 1245.72675 0.098452 4.0981E-05 -0.95007 -0.00039547 -0.85162 -0.00035449 416.24910113440615 96.854 0.073242 100.76 100.71 100.78 3.9084 0.11191 -0.0015044 NaN 0.40827 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 55217 + 32104 17849 20436 20447 0.11371472864470888 PVSKGKRP 8 Unmodified _PVSKGKRP_ 0 0 0 REV__ENST00000568299.2_1_16:34480765-34481439:-|nuORF REV__ENST00000568299.2_1_16:34480765-34481439:-|nuORF MSMS UPN48_class_I_Rep_1 5 434.7799377441406 2 434.771794 867.529036 NaN NaN NaN NaN NaN NaN NaN 74.362 1 77.852 77.352 78.352 3.49 0 0 0 0.40604 1 17569 17569 2.5775 0 1 + 32105 23074 20437 20448 36930 36930 0.08997214716839608 PVSLMLLFV 9 Unmodified _PVSLMLLFV_ 0 0 0 REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|295|3|anti-sense REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|295|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 509.8035583496094 2 509.803914 1017.59328 0.31369 0.00015992 -0.38061 -0.00019404 -0.066918 -3.4115E-05 509.8034906969912 90.056 0.56865 93.454 93.205 93.773 3.3976 127 75 2 0 0 0 0.48846 1 22604 22604 1.8442 1.8442 1 138740 + 32106 30040 20438 20449 36931 36931 0.08518233758786664 PVSLMLLFV 9 Unmodified _PVSLMLLFV_ 0 0 0 REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|295|3|anti-sense REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|295|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 509.803914 1017.59328 0.31836 0.0001623 -0.33414 -0.00017035 -0.015785 -8.0471E-06 509.80359914399037 93.465 0.29818 93.465 93.396 93.695 0 0.0077244 -0.00021076 NaN 1.8442 44 30 2 NaN NaN NaN NaN 0 NaN NaN 0 180810 + 32107 30040 20438 20449 0.08518233758786664 PVSLMLLFV 9 Unmodified _PVSLMLLFV_ 0 0 0 REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|295|3|anti-sense REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|295|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 509.803914 1017.59328 0.31778 0.000162 -0.058263 -2.9702E-05 0.25951 0.0001323 509.80374495279654 89.649 0.66646 93.397 93.094 93.761 3.7471 -0.060554 7.0527E-05 NaN 1.8442 184 80 3 NaN NaN NaN NaN 0 NaN NaN 0 323850 + 32108 30040 20438 20449 0.08518233758786664 PVSLVKTVL 9 Unmodified _PVSLVKTVL_ 0 0 0 L1M4b_dup1878|chr7:155661708-155663155:-|1.1280731086370028|0.0201112805761352|5.81|151.0|1|1|sense L1M4b_dup1878|chr7:155661708-155663155:-|1.1280731086370028|0.0201112805761352|5.81|151.0|1|1|sense L1M4b_dup1878|chr7:155661708-155663155:-|1.1280731086370028|0.0201112805761352|5.81|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.3127746582031 2 478.312961 954.611368 0.22131 0.00010586 -0.31315 -0.00014978 -0.091835 -4.3926E-05 478.31263559911406 61.421 0.39511 64.934 64.851 65.246 3.5129 43 32 2 0 0 0 0.47763 1 13646 13646 2.9952 0 1 104270 32109 8993 20439 20450 36932 36932 0.13224692005132965 PVSRNAAEYL 10 Unmodified _PVSRNAAEYL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1;BCR-ABL1|2|fusion;BCR-ABL1|1|fusion ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MSMS UPN47_class_I_Rep_2 3 560.2957763671875 2 560.293288 1118.57202 NaN NaN NaN NaN NaN NaN NaN 58.357 1 61.638 61.138 62.138 3.2818 0 0 0 0.53105 1 13503 13503 12.241 0.60036 1 32110 412 20440 20451 36933 36933 0.017479399836020093 PVSSHPYY 8 Unmodified _PVSSHPYY_ 0 0 0 L1MB5_dup584|chr1:246166789-246167502:-|1.6225277170351096|0.0321792867571603|5.66|151.0|29|1|anti-sense L1MB5_dup584|chr1:246166789-246167502:-|1.6225277170351096|0.0321792867571603|5.66|151.0|29|1|anti-sense L1MB5_dup584|chr1:246166789-246167502:-|1.6225277170351096|0.0321792867571603|5.66|151.0|29|1|anti-sense MSMS UPN46_class_I_Rep_3 1 475.2242736816406 2 475.224342 948.434132 NaN NaN NaN NaN NaN NaN NaN 45.197 1 45.197 44.697 45.697 0 0 0 0 0.38547 1 9168 9168 13.508 1.8676 1 32111 10629 20441 20452 36934 36934 -0.04214763545007827 PVSSRLKFI 9 Unmodified _PVSSRLKFI_ 0 0 0 L1MC4_dup15153|chr10:21634242-21635013:-|1.293725037105912|0.0053834430381911|7.91|151.0|54|3|anti-sense L1MC4_dup15153|chr10:21634242-21635013:-|1.293725037105912|0.0053834430381911|7.91|151.0|54|3|anti-sense L1MC4_dup15153|chr10:21634242-21635013:-|1.293725037105912|0.0053834430381911|7.91|151.0|54|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 524.2589111328125 2 523.821484 1045.62842 -0.033722 -1.7664E-05 -0.61257 -0.00032088 -0.64629 -0.00033854 523.821389559288 43.122 0.97968 46.81 46.13 47.11 3.6875 112 65 2 0 0 0 0.12034 1 8821 8821 7.2892 0.56607 1 76597 32112 11410 20442 20453 36935 36935 0.1074261261094307 PVSSSISFQI 10 Unmodified _PVSSSISFQI_ 0 0 0 ENST00000593203.1_1_19:10943515-10944133:+|nuORF ENST00000593203.1_1_19:10943515-10944133:+|nuORF ENST00000593203.1_1_19:10943515-10944133:+|nuORF MSMS UPN48_class_I_Rep_1 5 532.784912109375 2 532.784764 1063.55498 NaN NaN NaN NaN NaN NaN NaN 54.315 1 57.829 57.329 58.329 3.5143 0 0 0 0.53105 1 11488 11488 5.2969 0 1 32113 7642 20443 20454 36936 36936 0.025740193778119647 PVSTKNKEL 9 Unmodified _PVSTKNKEL_ 0 0 0 AluJb_dup109634|chr17:64360847-64361119:-|1.182245219742023|0.2894809662060103|2.03|148.0|7|2|sense AluJb_dup109634|chr17:64360847-64361119:-|1.182245219742023|0.2894809662060103|2.03|148.0|7|2|sense AluJb_dup109634|chr17:64360847-64361119:-|1.182245219742023|0.2894809662060103|2.03|148.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 508.2926025390625 2 508.292756 1014.57096 0.33391 0.00016972 -0.50033 -0.00025431 -0.16642 -8.4589E-05 508.29242316613175 52.173 0.52619 55.378 55.096 55.623 3.2055 60 33 2 0 0 0 0.36392 1 11649 11649 10.074 1.3285 1 126780 32114 14 20444 20455 36937 36937 0.06425725614712974 PVSVHSRSNF 10 Unmodified _PVSVHSRSNF_ 0 0 0 REV__L1MB1_dup5033|chr14:60101545-60102239:+|1.9314203766101072|0.1699165507558854|3.51|151.0|16|2|sense REV__L1MB1_dup5033|chr14:60101545-60102239:+|1.9314203766101072|0.1699165507558854|3.51|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 565.2909545898438 2 565.291079 1128.56761 -0.14914 -8.431E-05 0.36773 0.00020787 0.21858 0.00012356 565.2912264028799 32.39 1.0096 35.676 35.306 36.315 3.2867 129 77 2 0 0 0 0.56078 1 5836 5836 3.2813 0.28607 1 139680 + 32115 25676 20445 20456 36938 36938 0.008464755607292318 PVSVTERGF 9 Unmodified _PVSVTERGF_ 0 0 0 ENST00000507507.1_1_10:63170082-63173364:-|nuORF;ENSG00000196932|ENST00000399298|TMEM26 ENST00000507507.1_1_10:63170082-63173364:-|nuORF ENST00000507507.1_1_10:63170082-63173364:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.2763977050781 2 496.263999 990.513445 0.11862 5.8867E-05 0.19643 9.748E-05 0.31505 0.00015635 496.2640980418253 55.173 0.67855 58.651 58.324 59.003 3.4785 56 40 2 0 0 0 0.49026 1 12412 12412 1.6526 0 1 102560 32116 5337 20446 20457 36939 36939 0.017808834091511017 PVSYLAWFYLW 11 Unmodified _PVSYLAWFYLW_ 0 0 0 REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|70|1|anti-sense REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|70|1|anti-sense MSMS UPN47_class_I_Rep_1 2 482.2471618652344 3 482.24818 1443.72271 NaN NaN NaN NaN NaN NaN NaN 19.857 1 23.469 22.969 23.969 3.6118 0 0 0 0.38417 1 1897 1897 0.50596 0 1 + 32117 29299 20447 20458 36940 36940 0.018597066424263176 PVTCKHIKDCY 11 Unmodified _PVTCKHIKDCY_ 0 0 0 L1MCa_dup5017|chr10:87327532-87327865:-|1.0273511702043503|0.2116083323651224|2.28|150.0|20|2|anti-sense L1MCa_dup5017|chr10:87327532-87327865:-|1.0273511702043503|0.2116083323651224|2.28|150.0|20|2|anti-sense L1MCa_dup5017|chr10:87327532-87327865:-|1.0273511702043503|0.2116083323651224|2.28|150.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.5481872558594 3 436.214264 1305.62096 -0.46625 -0.00020338 -0.24337 -0.00010616 -0.70962 -0.00030955 436.2141160183078 16.711 1.0244 20.234 19.846 20.871 3.5224 221 118 2 0 0 0 0.66092 1 1209 1209 2.2527 2.2527 1 158390 32118 11819 20448 20459 36941 36941 -0.01962231043285101 PVTCKHIKDCY 11 Unmodified _PVTCKHIKDCY_ 0 0 0 L1MCa_dup5017|chr10:87327532-87327865:-|1.0273511702043503|0.2116083323651224|2.28|150.0|20|2|anti-sense L1MCa_dup5017|chr10:87327532-87327865:-|1.0273511702043503|0.2116083323651224|2.28|150.0|20|2|anti-sense L1MCa_dup5017|chr10:87327532-87327865:-|1.0273511702043503|0.2116083323651224|2.28|150.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 436.21435546875 3 436.214264 1305.62096 -0.74748 -0.00032606 0.13469 5.8755E-05 -0.61278 -0.0002673 436.2142968693269 17.268 1.3689 20.655 20.069 21.438 3.387 237 154 2 0 0 0 0.65674 1 1210 1210 2.6312 0.72486 1 102440 32119 11819 20448 20459 36942 36942 -0.01962231043285101 PVTFKANIV 9 Unmodified _PVTFKANIV_ 0 0 0 L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|91|2|anti-sense L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|91|2|anti-sense L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|91|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.79498291015625 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.15122 1 6971 6971 25.399 3.6527 1 289630 32120 14828 20449 20460 36943 36943 0.08103234828274708 PVTTKETK 8 Unmodified _PVTTKETK_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS UPN46_class_I_Rep_3 1 452.2687683105469 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 28.173 1 28.173 27.673 28.673 0 0 0 0 0.40738 1 4288 4288 0.79363 0 1 32121 2222 20450 20461 36944 36944 0.05214365177619129 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN46_class_I_Rep_3 1 406.2484436035156 2 406.248486 810.48242 0.054937 2.2318E-05 0.23684 9.6217E-05 0.29178 0.00011853 406.24879229202827 82.648 0.79874 82.648 82.142 82.941 0 254 71 5 0 0 0 0.82752 1 19490 19490 2.5775 0 1 75910000 32122 1265 20451 20462 36945 36945 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN46_class_I_Rep_3 1 406.24847412109375 2 406.248486 810.48242 0.056505 2.2955E-05 0.10333 4.1979E-05 0.15984 6.4934E-05 406.2484533372605 83.17 0.14357 83.17 83.062 83.206 0 33 11 3 0 0 0 0.82752 1 19708 19708 2.5775 0 1 2140600 32123 1265 20451 20462 36946 36946 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN46_class_I_Rep_3 1 406.2484130859375 2 406.248486 810.48242 0.057082 2.3189E-05 0.02086 8.4745E-06 0.077942 3.1664E-05 406.24842503435985 83.23 0.3989 83.23 83.206 83.605 0 108 41 4 0 0 0 0.82752 1 19787 19787 2.5775 0 1 998840 32124 1265 20451 20462 36947 36947 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN46_class_I_Rep_3 1 406.24847412109375 2 406.248486 810.48242 0.058091 2.3599E-05 0.052078 2.1157E-05 0.11017 4.4756E-05 406.2484414708247 83.669 0.21999 83.669 83.543 83.763 0 58 23 3 0 0 0 0.82752 2 19856 19856;19887 0.69038 0 1 439430 32125 1265 20451 20462 36948;36949 36948 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN46_class_I_Rep_3 1 406.2485656738281 2 406.248486 810.48242 0.059001 2.3969E-05 0.25176 0.00010228 0.31076 0.00012625 406.24851514570514 84.042 0.21416 84.042 83.856 84.07 0 60 25 3 0 0 0 0.82752 1 19961 19961 0.69038 0 1 573060 32126 1265 20451 20462 36950 36950 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN46_class_I_Rep_3 1 406.2488098144531 2 406.248486 810.48242 0.062661 2.5456E-05 0.33918 0.00013779 0.40184 0.00016325 406.2485638494706 85.167 0.16031 85.167 85.129 85.289 0 28 17 2 0 0 0 0.82752 1 20311 20311 2.5775 0 1 234890 32127 1265 20451 20462 36951 36951 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN47_class_I_Rep_1 2 406.24847412109375 2 406.248486 810.48242 0.0058 2.3563E-06 0.18274 7.4239E-05 0.18854 7.6596E-05 406.2486403058176 79.361 1.0462 82.807 82.344 83.39 3.4456 401 106 5 0 0 0 0.82752 2 19673 19673;19926 2.5775 0 1 14557000 32128 1265 20451 20462 36952;36953 36952 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN47_class_I_Rep_1 2 406.2483825683594 2 406.248486 810.48242 0.0095483 3.879E-06 0.14298 5.8087E-05 0.15253 6.1966E-05 406.2485215988616 79.969 0.36699 83.434 83.403 83.77 3.465 78 52 2 0 0 0 0.82752 2 19953 19953;19977 2.5775 0 1 1459400 32129 1265 20451 20462 36954;36955 36954 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN47_class_I_Rep_1 2 406.248291015625 2 406.248486 810.48242 0.01438 5.8419E-06 0.28438 0.00011553 0.29876 0.00012137 406.2485555642265 80.771 0.46805 84.258 84.181 84.649 3.4874 68 48 2 0 0 0 0.82752 1 20133 20133 0.69038 0 1 253200 32130 1265 20451 20462 36956 36956 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN47_class_I_Rep_2 3 406.24871826171875 2 406.248486 810.48242 -0.54346 -0.00022078 0.64256 0.00026104 0.099097 4.0258E-05 406.24873734284085 80.296 0.24512 83.666 83.545 83.79 3.3694 51 34 2 0 0 0 0.82752 1 20017 20017 0.69038 0 1 779210 32131 1265 20451 20462 36957 36957 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-SECPEP UPN47_class_I_Rep_2 3 406.2491760253906 2 406.248486 810.48242 -0.4126 -0.00016762 1.2082 0.00049083 0.79559 0.00032321 406.248987951534 100.61 0.097412 104.11 104.08 104.18 3.5063 24 14 2 0 0 0 0.72333 1 24596 24596 0.79363 0 1 130270 32132 1265 20451 20462 36958 36958 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN47_class_I_Rep_3 4 406.2483215332031 2 406.248486 810.48242 -0.64194 -0.00026079 1.284 0.00052163 0.64207 0.00026084 406.249048393348 81.853 0.30846 85.176 84.952 85.261 3.3231 46 31 2 0 0 0 0.82752 1 20524 20524 0.79363 0 1 166140 32133 1265 20451 20462 36959 36959 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_1 5 406.2484436035156 2 406.248486 810.48242 -0.11654 -4.7344E-05 0.2569 0.00010437 0.14036 5.7023E-05 406.2486768543464 79.223 1.1498 82.759 82.269 83.419 3.5352 475 132 5 0 0 0 0.82752 1 19050 19050 2.5775 0 1 18617000 32134 1265 20451 20462 36960 36960 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_1 5 406.24957275390625 2 406.248486 810.48242 -0.12153 -4.9372E-05 0.95055 0.00038616 0.82901 0.00033679 406.248938261389 81.638 0.23929 85.213 85.015 85.255 3.5753 39 28 3 0 0 0 0.82752 1 19458 19458 0.69038 0 1 191400 32135 1265 20451 20462 36961 36961 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_1 5 406.2489318847656 2 406.248486 810.48242 -0.12216 -4.9627E-05 0.88081 0.00035783 0.75865 0.0003082 406.24895416910044 81.909 0.14547 85.485 85.417 85.562 3.5753 21 17 2 0 0 0 0.82752 1 19547 19547 2.5775 0 1 197460 32136 1265 20451 20462 36962 36962 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MSMS UPN48_class_I_Rep_1 5 406.2485656738281 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 83.848 1 87.445 86.945 87.945 3.5973 0 0 0 0.40604 1 20062 20062 2.5775 0 1 32137 1265 20451 20462 36963 36963 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_2 6 406.2486267089844 2 406.248486 810.48242 0.077478 3.1475E-05 0.082421 3.3483E-05 0.1599 6.4959E-05 406.24861176299316 79.056 1.2148 82.689 82.241 83.455 3.6331 494 140 5 0 0 0 0.82752 1 18931 18931 2.5775 0 1 21710000 32138 1265 20451 20462 36964 36964 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MSMS UPN48_class_I_Rep_2 6 406.2488098144531 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 80.397 1 84.042 83.542 84.542 3.6446 0 0 0 0.40604 1 19080 19080 2.5775 0 1 32139 1265 20451 20462 36965 36965 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_3 7 406.24853515625 2 406.248486 810.48242 0.13475 5.4743E-05 0.019694 8.0006E-06 0.15445 6.2743E-05 406.2485905352695 79.12 1.2185 82.762 82.257 83.476 3.6423 552 150 5 0 0 0 0.82752 2 18890 18890;18922 2.5775 0 1 24320000 32140 1265 20451 20462 36966;36967 36966 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_3 7 406.2484436035156 2 406.248486 810.48242 0.12922 5.2497E-05 0.80093 0.00032538 0.93015 0.00037787 406.2488712023544 81.51 0.29765 85.195 85.074 85.372 3.685 47 36 2 0 0 0 0.82752 1 19313 19313 0.69038 0 1 192410 32141 1265 20451 20462 36968 36968 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_3 7 406.2495422363281 2 406.248486 810.48242 0.09658 3.9235E-05 1.354 0.00055005 1.4506 0.00058928 406.24922023566387 100 0.43668 103.86 103.66 104.1 3.8537 71 61 2 0 0 0 0.82752 2 23671 23671;23729 2.5775 0 1 130660 32142 1265 20451 20462 36969;36970 36969 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MSMS UPN48_class_I_Rep_3 7 406.2481994628906 2 406.248486 810.48242 0.09656 3.9227E-05 0.38871 0.00015791 0.48527 0.00019714 406.24849127488227 110.96 0.14572 114.63 114.6 114.75 3.6654 31 17 2 0 0 0 0.82752 1 26331 26331 0.69038 0 1 295600 32143 1265 20451 20462 36971 36971 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 406.248486 810.48242 0.055658 2.2611E-05 0.10119 4.1107E-05 0.15685 6.3718E-05 406.24861577593936 82.844 0.13652 82.844 82.814 82.951 0 0.068109 8.4879E-06 NaN 2.5775 25 9 3 NaN NaN NaN NaN 0 NaN NaN 0 12613000 32144 1265 20451 20462 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 406.248486 810.48242 -0.55123 -0.00022394 0.77046 0.000313 0.21922 8.906E-05 406.24887489264825 79.425 1.1944 82.781 82.337 83.531 3.3554 0.058198 0.00011261 NaN 2.5775 452 130 5 NaN NaN NaN NaN 0 NaN NaN 0 15786000 32145 1265 20451 20462 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 406.248486 810.48242 -0.64772 -0.00026314 0.88832 0.00036088 0.2406 9.7741E-05 406.248920070042 79.407 1.4769 82.702 82.243 83.72 3.295 -0.020273 0.00020837 NaN 2.5775 474 158 5 NaN NaN NaN NaN 0 NaN NaN 0 15374000 32146 1265 20451 20462 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MATCH UPN48_class_I_Rep_1 5 2 406.248486 810.48242 -0.11977 -4.8657E-05 0.38156 0.00015501 0.26179 0.00010635 406.2486206814186 80.78 0.028473 84.342 84.328 84.356 3.5624 0.12793 9.4209E-05 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 89928 32147 1265 20451 20462 0.06959774885569914 PVVGARRG 8 Unmodified _PVVGARRG_ 0 0 0 nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 nc|ENSG00000085644|O14771-2|ZNF213 MULTI-MATCH UPN48_class_I_Rep_2 6 2 406.248486 810.48242 0.077808 3.1609E-05 0.14265 5.795E-05 0.22045 8.9559E-05 406.2484235287999 79.877 0.076363 83.522 83.461 83.537 3.6446 -0.073678 7.0386E-05 NaN 0.69038 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 650200 32148 1265 20451 20462 0.06959774885569914 PVVGLERPLLY 11 Unmodified _PVVGLERPLLY_ 0 0 0 ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 628.8760986328125 2 628.374081 1254.73361 0.63464 0.00039879 0.51017 0.00032058 1.1448 0.00071937 628.3741873207558 108.66 0.61418 112.19 112.07 112.68 3.5333 166 71 3 0 0 0 0.64955 1 26403 26403 3.2813 0.28607 1 29596000 32149 6461 20452 20463 36972 36972 0.11643109016722519 PVVGLERPLLY 11 Unmodified _PVVGLERPLLY_ 0 0 0 ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 628.374081 1254.73361 0.5594 0.00035151 0.79732 0.00050102 1.3567 0.00085253 628.3744104902612 108.64 0.40695 112.28 112.16 112.57 3.6355 0.013295 0.00020534 NaN 3.2813 121 42 4 NaN NaN NaN NaN 0 NaN NaN 0 32430000 32150 6461 20452 20463 0.11643109016722519 PVVGLERPLLY 11 Unmodified _PVVGLERPLLY_ 0 0 0 ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 628.374081 1254.73361 0.51278 0.00032222 0.69303 0.00043548 1.2058 0.0007577 628.3742048836241 108.66 0.61189 112.2 112.07 112.68 3.5382 -0.064218 7.4274E-05 NaN 3.2813 161 69 4 NaN NaN NaN NaN 0 NaN NaN 0 28317000 32151 6461 20452 20463 0.11643109016722519 PVVGLERPLLY 11 Unmodified _PVVGLERPLLY_ 0 0 0 ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 628.374081 1254.73361 0.42905 0.0002696 0.6086 0.00038243 1.0376 0.00065203 628.3739904417034 108.63 0.53831 112.26 112.17 112.7 3.6321 -0.0024614 -3.1844E-05 NaN 3.2813 116 64 4 NaN NaN NaN NaN 0 NaN NaN 0 14681000 32152 6461 20452 20463 0.11643109016722519 PVVGLERPLLY 11 Unmodified _PVVGLERPLLY_ 0 0 0 ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 628.374081 1254.73361 0.49545 0.00031133 0.24991 0.00015704 0.74536 0.00046837 628.3739362703798 108.69 0.55075 112.36 112.25 112.8 3.6746 0.094654 -0.00048262 NaN 3.2813 123 56 3 NaN NaN NaN NaN 0 NaN NaN 0 12865000 32153 6461 20452 20463 0.11643109016722519 PVVGLERPLLY 11 Unmodified _PVVGLERPLLY_ 0 0 0 ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF ENST00000377516.6_1_1:7903664-7903865:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 628.374081 1254.73361 0.60515 0.00038026 0.93902 0.00059006 1.5442 0.00097032 628.3744295782845 108.63 0.37394 112.3 112.23 112.61 3.6751 0.034971 0.00038342 NaN 3.2813 86 42 3 NaN NaN NaN NaN 0 NaN NaN 0 19669000 32154 6461 20452 20463 0.11643109016722519 PVVGLKMGV 9 Unmodified _PVVGLKMGV_ 0 0 0 REV__ENST00000552168.1_1_12:53455573-53455786:+|nuORF REV__ENST00000552168.1_1_12:53455573-53455786:+|nuORF MSMS UPN47_class_I_Rep_2 3 450.2744445800781 2 450.272781 898.531009 NaN NaN NaN NaN NaN NaN NaN 85.314 1 88.747 88.247 89.247 3.4329 0 0 0 0.4007 1 21226 21226 0.52476 0 1 + 32155 22965 20453 20464 36973 36973 0.07768507410457914 PVVGLKRKRKL 11 Unmodified _PVVGLKRKRKL_ 0 0 0 REV__nc|ENSG00000160208|Q14684-2|RRP1B REV__nc|ENSG00000160208|Q14684-2|RRP1B MSMS UPN47_class_I_Rep_1 2 647.4449462890625 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 108.07 1 111.71 111.21 112.21 3.6355 0 0 0 0.38417 1 26516 26516 0.35063 0.043601 1 + 32156 32027 20454 20465 36974 36974 0.24213580918444677 PVVIQRVLRR 10 Unmodified _PVVIQRVLRR_ 0 0 0 L1ME1_dup26561|chr16:24081901-24083849:+|2.253668271481509|0.0081995452779647|8.1|151.0|12|1|sense L1ME1_dup26561|chr16:24081901-24083849:+|2.253668271481509|0.0081995452779647|8.1|151.0|12|1|sense L1ME1_dup26561|chr16:24081901-24083849:+|2.253668271481509|0.0081995452779647|8.1|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 618.4061889648438 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 110.66 1 114.24 113.74 114.74 3.5835 0 0 0 0.53105 1 27281 27281 0.45834 0.057624 1 32157 12343 20455 20466 36975 36975 0.19060148333210236 PVVLDFLTE 9 Unmodified _PVVLDFLTE_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MSMS UPN47_class_I_Rep_1 2 516.7832641601562 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 87.804 1 91.441 90.941 91.941 3.6372 0 0 0 0.38639 1 21948 21948 3.9444 0 1 + 32158 19320 20456 20467 36976 36976 0.039398050088948366 PVVLDFLTE 9 Unmodified _PVVLDFLTE_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MSMS UPN47_class_I_Rep_2 3 516.78369140625 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 87.853 1 91.3 90.8 91.8 3.4471 0 0 0 0.38639 1 21841 21841 3.9444 0 1 + 32159 19320 20456 20467 36977 36977 0.039398050088948366 PVVLDFLTE 9 Unmodified _PVVLDFLTE_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MSMS UPN47_class_I_Rep_2 3 516.8056030273438 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 87.951 1 91.399 90.899 91.899 3.4471 0 0 0 0.38639 1 21867 21867 3.9444 0 1 + 32160 19320 20456 20467 36978 36978 0.039398050088948366 PVVLDFLTE 9 Unmodified _PVVLDFLTE_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MSMS UPN47_class_I_Rep_2 3 516.7841796875 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 87.956 1 91.403 90.903 91.903 3.4471 0 0 0 0.38639 1 21869 21869 3.9444 0 1 + 32161 19320 20456 20467 36979 36979 0.039398050088948366 PVVLDFLTE 9 Unmodified _PVVLDFLTE_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MSMS UPN47_class_I_Rep_3 4 516.7839965820312 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 88.372 1 91.76 91.26 92.26 3.3873 0 0 0 0.38639 1 22164 22164 3.9444 0 1 + 32162 19320 20456 20467 36980 36980 0.039398050088948366 PVVLDFLTE 9 Unmodified _PVVLDFLTE_ 0 0 0 REV__ENSG00000139832|ENST00000267328|RAB20 REV__ENSG00000139832|ENST00000267328|RAB20 MSMS UPN47_class_I_Rep_3 4 516.8060302734375 2 516.784233 1031.55391 NaN NaN NaN NaN NaN NaN NaN 88.421 1 91.808 91.308 92.308 3.3873 0 0 0 0.38639 1 22175 22175 3.9444 0 1 + 32163 19320 20456 20467 36981 36981 0.039398050088948366 PVVMRSQK 8 Unmodified _PVVMRSQK_ 0 0 0 REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|12|1|sense REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 472.7713623046875 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 119.66 1 119.66 119.16 120.16 0 0 0 0 0.40738 1 29749 29749 0.79363 0 1 + 32164 25873 20457 20468 36982 36982 0.05329837636600132 PVVMRSQK 8 Unmodified _PVVMRSQK_ 0 0 0 REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|12|1|sense REV__L1MB3_dup3074|chr3:47964863-47966072:-|1.594926785993477|0.0433335852588794|5.2|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 472.7712097167969 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 112.07 1 115.59 115.09 116.09 3.5207 0 0 0 0.40738 1 27519 27519 0.79363 0 1 + 32165 25873 20457 20468 36983 36983 0.05329837636600132 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 481.337158203125 2 481.836071 961.65759 0.16442 7.9222E-05 0.55246 0.00026619 0.71687 0.00034542 481.83447378093314 111.01 0.14153 114.54 114.44 114.58 3.529 17 14 2 0 0 0 0.12551 1 27215 27215 0 0 1 36319 + 32166 26897 20458 20469 36984 36984 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.3368835449219 2 481.836071 961.65759 0.23163 0.00011161 0.29844 0.0001438 0.53007 0.00025541 481.83419611463313 72.532 0.1456 76.096 76.021 76.167 3.5645 20 12 2 0 0 0 0.12551 1 16998 16998 0 0 1 69072 + 32167 26897 20458 20469 36985 36985 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.3374328613281 2 481.836071 961.65759 0.23144 0.00011151 0.17401 8.3845E-05 0.40545 0.00019536 481.8341595387369 72.14 0.19672 75.691 75.62 75.816 3.5505 27 19 2 0 0 0 0.12551 1 16876 16876 0 0 1 63470 + 32168 26897 20458 20469 36986 36986 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.33740234375 2 481.836071 961.65759 0.23165 0.00011162 1.117 0.00053821 1.3487 0.00064983 481.83425497878517 72.405 0.11247 75.969 75.909 76.021 3.5645 11 9 2 0 0 0 0.12551 1 16958 16958 0 0 1 53337 + 32169 26897 20458 20469 36987 36987 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 481.33660888671875 2 481.836071 961.65759 0.24959 0.00012026 1.3411 0.00064619 1.5907 0.00076645 481.8345967575005 67.928 0.12878 71.436 71.339 71.468 3.5083 10 8 2 0 0 0 0.12551 1 15617 15617 0 0 1 59734 + 32170 26897 20458 20469 36988 36988 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 481.33697509765625 2 481.836071 961.65759 0.28417 0.00013693 1.1144 0.00053695 1.3985 0.00067387 481.834520986871 69.966 0.17754 73.479 73.411 73.588 3.5128 17 12 2 0 0 0 0.12551 1 16149 16149 0 0 1 34304 + 32171 26897 20458 20469 36989 36989 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 481.3370361328125 2 481.836071 961.65759 0.27854 0.00013421 1.1034 0.00053168 1.382 0.00066589 481.83444147950337 72.392 0.18135 75.918 75.877 76.059 3.5266 25 16 2 0 0 0 0.12551 1 16880 16880 0 0 1 40533 + 32172 26897 20458 20469 36990 36990 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 481.33685302734375 2 481.836071 961.65759 0.28531 0.00013747 1.1112 0.00053539 1.3965 0.00067287 481.83449827854776 68.401 0.1343 71.91 71.835 71.969 3.5094 15 13 2 0 0 0 0.12551 1 15668 15668 0 0 1 44102 + 32173 26897 20458 20469 36991 36991 0.17522756907249004 PVVPVILLI 9 Unmodified _PVVPVILLI_ 0 0 0 REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense REV__L1MC4_dup2552|chr2:69601797-69602617:+|1.3278293985117244|0.0200333678707896|6.05|150.0|58|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 481.836071 961.65759 0.38397 0.00018501 -6.38 -0.0030741 -5.996 -0.0028891 481.8347748471762 110.65 0.087112 114.18 114.11 114.2 3.5271 -0.17911 -0.0048639 NaN 0 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 37159 + 32174 26897 20458 20469 0.17522756907249004 PVVTVNHIL 9 Unmodified _PVVTVNHIL_ 0 0 0 ENST00000528352.1_1_1:67241210-67243134:+|nuORF;ENSG00000152760|ENST00000282670|DYNLT5 ENST00000528352.1_1_1:67241210-67243134:+|nuORF ENST00000528352.1_1_1:67241210-67243134:+|nuORF MSMS UPN48_class_I_Rep_1 5 496.30206298828125 2 496.300384 990.586216 NaN NaN NaN NaN NaN NaN NaN 103.2 1 106.82 106.32 107.32 3.6209 0 0 0 0.39428 1 24881 24881 2.0598 1.3694 1 32175 3628 20459 20470 36992 36992 0.0905463720255284 PVWFLCPY 8 Unmodified _PVWFLCPY_ 0 0 0 REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|138|3|anti-sense REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|138|3|anti-sense MSMS UPN46_class_I_Rep_3 1 512.7515258789062 2 512.751682 1023.48881 NaN NaN NaN NaN NaN NaN NaN 22.7 1 22.7 22.2 23.2 0 0 0 0 0.40738 1 2737 2737 0.79363 0 1 + 32176 26678 20460 20471 36993 36993 -0.021994679979457032 PVWGQWFF 8 Unmodified _PVWGQWFF_ 0 0 0 L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|292|3|anti-sense L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|292|3|anti-sense L1MC1_dup5630|chr6:147218771-147223153:-|2.9252964255566374|0.2157962613813711|3.76|151.0|292|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 533.7615966796875 2 533.760895 1065.50724 0.13555 7.235E-05 1.4328 0.00076476 1.5683 0.00083711 533.7615645252697 32.583 0.16478 32.583 32.526 32.691 0 16 11 2 0 0 0 0.82752 1 5612 5612 2.5775 0.27475 1 89513 32177 11168 20461 20472 36994 36994 -0.022895900317280393 PVWKTLLQ 8 Unmodified _PVWKTLLQ_ 0 0 0 L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 492.81402587890625 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.281 1 60.776 60.276 61.276 3.4942 0 0 0 0.36705 1 12398 12398 18.135 0 1 32178 12833 20462 20473 36995 36995 0.08795538690912963 PVWKTLLQ 8 Unmodified _PVWKTLLQ_ 0 0 0 L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 492.81378173828125 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.728 1 61.222 60.722 61.722 3.4942 0 0 0 0.36705 1 12532 12532 18.135 0 1 32179 12833 20462 20473 36996 36996 0.08795538690912963 PVWKTLLQ 8 Unmodified _PVWKTLLQ_ 0 0 0 L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 492.8135070800781 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 57.174 1 60.717 60.217 61.217 3.5427 0 0 0 0.33946 1 12276 12276 24.674 6.5389 1 32180 12833 20462 20473 36997 36997 0.08795538690912963 PVWLNSGKK 9 Unmodified _PVWLNSGKK_ 0 0 0 REV__nc|ENSG00000179057|Q8N9C0|IGSF22 REV__nc|ENSG00000179057|Q8N9C0|IGSF22 MSMS UPN48_class_I_Rep_2 6 514.797607421875 2 514.798009 1027.58147 NaN NaN NaN NaN NaN NaN NaN 69.332 1 72.854 72.354 73.354 3.5216 0 0 0 0.39428 1 16055 16055 2.0598 0.21551 1 + 32181 32071 20463 20474 36998 36998 0.06877753059802671 PVWMPFFS 8 Unmodified _PVWMPFFS_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|276|3|anti-sense;L1M2_dup1237|chr2:202745294-202748824:+|7.846480984053335|0.1316164233949067|5.9|151.0|133|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|276|3|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|276|3|anti-sense MSMS UPN47_class_I_Rep_3 4 505.74298095703125 2 505.743857 1009.47316 NaN NaN NaN NaN NaN NaN NaN 29.464 1 32.787 32.287 33.287 3.3235 0 0 0 0.40738 1 4767 4767 0.79363 0 1 32182 8661 20464 20475 36999 36999 -0.031197545149780126 PVYINRNLE 9 Unmodified _PVYINRNLE_ 0 0 0 HERVL-int_dup372|chr3:17590046-17590957:+|1.5651126074129669|0.0087119227563187|7.49|151.0|9|2|sense HERVL-int_dup372|chr3:17590046-17590957:+|1.5651126074129669|0.0087119227563187|7.49|151.0|9|2|sense HERVL-int_dup372|chr3:17590046-17590957:+|1.5651126074129669|0.0087119227563187|7.49|151.0|9|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 559.757568359375 2 559.303655 1116.59276 0.47442 0.00026535 -3.3169 -0.0018551 -2.8424 -0.0015898 559.3025125957571 69.781 0.078949 73.294 73.269 73.348 3.5128 8 6 2 0 0 0 0.12235 1 16094 16094 4.756 0.81161 1 34616 32183 8370 20465 20476 37000 37000 0.03912530363299993 PVYSNERY 8 Unmodified _PVYSNERY_ 0 0 0 REV__nc|ENSG00000168000|Q96G97-3|BSCL2 REV__nc|ENSG00000168000|Q96G97-3|BSCL2 MSMS UPN47_class_I_Rep_2 3 514.246826171875 2 514.245806 1026.47706 NaN NaN NaN NaN NaN NaN NaN 37.335 1 40.734 40.234 41.234 3.3988 0 0 0 0.40404 1 7108 7108 5.2307 0 1 + 32184 20252 20466 20477 37001 37001 -0.03511993487563814 PVYWNRFQ 8 Unmodified _PVYWNRFQ_ 0 0 0 L1M5_dup6091|chr2:96541304-96541663:+|1.1262614832525857|0.3863465580499676|1.54|151.0|13|3|sense L1M5_dup6091|chr2:96541304-96541663:+|1.1262614832525857|0.3863465580499676|1.54|151.0|13|3|sense L1M5_dup6091|chr2:96541304-96541663:+|1.1262614832525857|0.3863465580499676|1.54|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 555.2809448242188 2 555.279983 1108.54541 NaN NaN NaN NaN NaN NaN NaN 66.674 1 70.032 69.532 70.532 3.3576 0 0 0 0.40738 1 15986 15986 0.79363 0 1 32185 9205 20467 20478 37002 37002 -0.004517041170629454 PWAERLTVGD 10 Unmodified _PWAERLTVGD_ 0 0 0 REV__MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|12|3|sense REV__MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|12|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.2928466796875 2 572.293288 1142.57202 -0.065175 -3.7299E-05 -0.13463 -7.7049E-05 -0.19981 -0.00011435 572.2931300032361 35.053 0.79919 38.739 38.474 39.273 3.6859 101 57 2 0 0 0 0.54822 1 6400 6400 5.7319 0.43497 1 199520 + 32186 31692 20468 20479 37003 37003 0.006439399836153825 PWAERLTVGD 10 Unmodified _PWAERLTVGD_ 0 0 0 REV__MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|12|3|sense REV__MLT1E1A_dup1545|chr7:36513466-36513950:+|1.574530820373857|0.316753748650843|2.31|151.0|12|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 572.2930297851562 2 572.293288 1142.57202 0.045692 2.6149E-05 -0.13315 -7.62E-05 -0.087456 -5.005E-05 572.2931793302678 35.441 0.87403 38.852 38.532 39.406 3.4114 85 55 2 0 0 0 0.54822 1 6512 6512 5.7319 5.7319 1 135880 + 32187 31692 20468 20479 37004 37004 0.006439399836153825 PWALRKAEE 9 Unmodified _PWALRKAEE_ 0 0 0 ENST00000563306.5_1_16:46723682-46729618:+|nuORF ENST00000563306.5_1_16:46723682-46729618:+|nuORF ENST00000563306.5_1_16:46723682-46729618:+|nuORF MSMS UPN46_class_I_Rep_3 1 549.9846801757812 2 550.298373 1098.58219 NaN NaN NaN NaN NaN NaN NaN 53.103 1 53.103 52.603 53.603 0 0 0 0 0.38639 1 11402 11402 3.9444 1.8846 1 32188 7471 20469 20480 37005 37005 0.03684547708826358 PWCLLRFD 8 Unmodified _PWCLLRFD_ 0 0 0 REV__L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|325|3|anti-sense REV__L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|325|3|anti-sense MSMS UPN46_class_I_Rep_3 1 525.1527099609375 2 525.265487 1048.51642 NaN NaN NaN NaN NaN NaN NaN 81.672 1 81.672 81.172 82.172 0 0 0 0 0.40738 1 19301 19301 0.79363 0 1 + 32189 30024 20470 20481 37006 37006 -0.005895647376974011 PWCVCSFISL 10 Unmodified _PWCVCSFISL_ 0 0 0 REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|256|3|anti-sense REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|256|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 577.7732543945312 2 577.772288 1153.53002 0.2473 0.00014288 0.7635 0.00044113 1.0108 0.00058401 577.7722369828927 50.881 2.2088 54.51 52.989 55.198 3.6285 185 113 3 0 0 0 0.35076 1 11268 11268 24.021 0.87215 1 566540 + 32190 30422 20471 20482 37007 37007 -0.040600750207659075 PWCWCCACH 9 Unmodified _PWCWCCACH_ 0 0 0 L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense MSMS UPN47_class_I_Rep_1 2 554.6862182617188 2 554.684635 1107.35472 NaN NaN NaN NaN NaN NaN NaN 29.519 1 33.277 32.777 33.777 3.7578 0 0 0 0.40038 1 4700 4700 0.6015 0.076735 1 32191 12303 20472 20483 37008 37008 -0.194665163583295 PWCWCCACH 9 Unmodified _PWCWCCACH_ 0 0 0 L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense MSMS UPN47_class_I_Rep_2 3 554.6861572265625 2 554.684635 1107.35472 NaN NaN NaN NaN NaN NaN NaN 18.528 1 21.917 21.417 22.417 3.3898 0 0 0 0.40038 1 1583 1583 0.6015 0.14316 1 32192 12303 20472 20483 37009 37009 -0.194665163583295 PWCWCCACH 9 Unmodified _PWCWCCACH_ 0 0 0 L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense MSMS UPN47_class_I_Rep_2 3 554.6862182617188 2 554.684635 1107.35472 NaN NaN NaN NaN NaN NaN NaN 26.318 1 29.812 29.312 30.312 3.4945 0 0 0 0.40038 1 3789 3789 0.6015 0.14316 1 32193 12303 20472 20483 37010 37010 -0.194665163583295 PWCWCCACH 9 Unmodified _PWCWCCACH_ 0 0 0 L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|49|3|sense MSMS UPN48_class_I_Rep_1 5 554.2474365234375 2 554.684635 1107.35472 NaN NaN NaN NaN NaN NaN NaN 30.477 1 34.019 33.519 34.519 3.542 0 0 0 0.40038 1 4378 4378 0.6015 0.6015 1 32194 12303 20472 20483 37011 37011 -0.194665163583295 PWDLFSFF 8 Unmodified _PWDLFSFF_ 0 0 0 REV__L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|63|1|anti-sense REV__L1MC3_dup8138|chr10:48325512-48326931:-|1.174249414881302|0.0149134025099167|6.3|150.0|63|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.752197265625 2 529.752736 1057.49092 NaN NaN NaN NaN NaN NaN NaN 114.93 1 118.51 118.01 119.01 3.5809 0 0 0 0.40604 1 28415 28415 2.5775 0 1 + 32195 26784 20473 20484 37012 37012 -0.035527159884850334 PWELRSHK 8 Unmodified _PWELRSHK_ 0 0 0 REV__L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|173|3|anti-sense REV__L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|173|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.79638671875 2 526.785433 1051.55631 NaN NaN NaN NaN NaN NaN NaN 25.95 1 29.712 29.212 30.212 3.7624 0 0 0 0.40604 1 3640 3640 2.5775 0 1 + 32196 30264 20474 20485 37013 37013 0.03259698257238597 PWEPIGFSM 9 Unmodified _PWEPIGFSM_ 0 0 0 REV__ENSG00000153944.12,MSI2,chr17,+,I20.1,57487290,57524308|34|16.69|1|intron REV__ENSG00000153944.12,MSI2,chr17,+,I20.1,57487290,57524308|34|16.69|1|intron MSMS UPN46_class_I_Rep_3 1 532.2342529296875 2 532.249503 1062.48445 NaN NaN NaN NaN NaN NaN NaN 24.496 1 24.496 23.996 24.996 0 0 0 0 0.38639 1 3229 3229 3.9444 0.66309 1 + 32197 19723 20475 20486 37014 37014 -0.04428977211500751 PWEPYSKN 8 Unmodified _PWEPYSKN_ 0 0 0 MARNA_dup1035|chr5:32168275-32168359:-|1.1323013278731942|0.0524896466003984|4.43|151.0|9|3|anti-sense MARNA_dup1035|chr5:32168275-32168359:-|1.1323013278731942|0.0524896466003984|4.43|151.0|9|3|anti-sense MARNA_dup1035|chr5:32168275-32168359:-|1.1323013278731942|0.0524896466003984|4.43|151.0|9|3|anti-sense MSMS UPN48_class_I_Rep_2 6 510.74334716796875 2 510.742899 1019.47125 NaN NaN NaN NaN NaN NaN NaN 26.685 1 30.319 29.819 30.819 3.6332 0 0 0 0.40604 1 3432 3432 2.5775 0 1 32198 15748 20476 20487 37015 37015 -0.037710919992491654 PWFATRQD 8 Unmodified _PWFATRQD_ 0 0 0 REV__L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|51|1|anti-sense REV__L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 510.74908447265625 2 510.748516 1019.48248 NaN NaN NaN NaN NaN NaN NaN 22.324 1 25.673 25.173 26.173 3.3496 0 0 0 0.40738 1 2652 2652 0.79363 0 1 + 32199 30681 20477 20488 37016 37016 -0.026482699051030067 PWFCSGCGLVQ 11 Unmodified _PWFCSGCGLVQ_ 0 0 0 REV__MER21C_dup3265|chr10:12393861-12394640:-|1.4709597144270403|0.0098883011771274|7.22|151.0|32|2|anti-sense REV__MER21C_dup3265|chr10:12393861-12394640:-|1.4709597144270403|0.0098883011771274|7.22|151.0|32|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.7664184570312 2 598.764994 1195.51544 NaN NaN NaN NaN NaN NaN NaN 44.069 1 47.764 47.264 48.264 3.6951 0 0 0 0.38417 1 9126 9126 1.3295 0.63916 1 + 32200 31230 20478 20489 37017 37017 -0.07450147168901822 PWFKGWKI 8 Unmodified _PWFKGWKI_ 0 0 0 ENST00000547505.2_1_12:44054116-44054311:+|nuORF ENST00000547505.2_1_12:44054116-44054311:+|nuORF ENST00000547505.2_1_12:44054116-44054311:+|nuORF MSMS UPN47_class_I_Rep_2 3 531.3009033203125 2 531.300188 1060.58582 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.24 114.74 115.74 3.5226 0 0 0 0.40746 1 27200 27200 0.69038 0 1 32201 7384 20479 20490 37018 37018 0.05795262273363733 PWFPSDFYDG 10 Unmodified _PWFPSDFYDG_ 0 0 0 ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5 ENST00000483195.5_1_2:74452054-74512997:-|nuORF ENST00000483195.5_1_2:74452054-74512997:-|nuORF MSMS UPN47_class_I_Rep_3 4 615.76025390625 2 615.758746 1229.50294 NaN NaN NaN NaN NaN NaN NaN 30.517 1 33.829 33.329 34.329 3.3116 0 0 0 0.53105 1 5077 5077 1.6526 0.17072 1 32202 5246 20480 20491 37019 37019 -0.10263144035957339 PWFVVWTYY 9 Unmodified _PWFVVWTYY_ 0 0 0 REV__nc|ENSG00000133678|Q8TBM7-2|TMEM254 REV__nc|ENSG00000133678|Q8TBM7-2|TMEM254 MSMS UPN47_class_I_Rep_1 2 630.808349609375 2 630.808042 1259.60153 NaN NaN NaN NaN NaN NaN NaN 113.31 1 116.88 116.38 117.38 3.572 0 0 0 0.40038 1 27953 27953 0.6015 0 1 + 32203 19064 20481 20492 37020 37020 -0.01788496000244777 PWGGEVHNVGR 11 Unmodified _PWGGEVHNVGR_ 0 0 0 REV__ENSG00000171595|ENST00000311014|DNAI2 REV__ENSG00000171595|ENST00000311014|DNAI2 MSMS UPN48_class_I_Rep_2 6 604.3004760742188 2 604.301978 1206.5894 NaN NaN NaN NaN NaN NaN NaN 43.425 1 47.186 46.686 47.686 3.7617 0 0 0 0.38417 1 8158 8158 2.4985 0.65425 1 + 32204 20413 20482 20493 37021 37021 -0.005627196907425969 PWHCPLLLV 9 Unmodified _PWHCPLLLV_ 0 0 0 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 MULTI-SECPEP UPN47_class_I_Rep_2 3 539.79296875 2 539.29933 1076.58411 0.38184 0.00020592 2.4067 0.001298 2.7886 0.0015039 539.3000890719501 72.402 0.13306 75.699 75.68 75.813 3.2971 17 13 2 0 0 0 0.11775 1 17769 17769 9.3474 0.75416 1 46982 32205 3193 20483 20494 37022 37022 0.04887885193102193 PWHLHRWLS 9 Unmodified _PWHLHRWLS_ 0 0 0 L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|101|1|anti-sense L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|101|1|anti-sense L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|101|1|anti-sense MSMS UPN48_class_I_Rep_2 6 616.3284912109375 2 616.327799 1230.64105 NaN NaN NaN NaN NaN NaN NaN 61.163 1 64.642 64.142 65.142 3.4785 0 0 0 0.40038 1 13564 13564 0.6015 0 1 32206 8717 20484 20495 37023 37023 0.034950687938362535 PWHVCLTL 8 Unmodified _PWHVCLTL_ 0 0 0 REV__L1M4c_dup1132|chr6:2327557-2328223:-|1.1760872343104596|0.0275157580090614|5.42|150.0|35|1|anti-sense REV__L1M4c_dup1132|chr6:2327557-2328223:-|1.1760872343104596|0.0275157580090614|5.42|150.0|35|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7538146972656 2 484.754756 967.494958 NaN NaN NaN NaN NaN NaN NaN 19.382 1 22.92 22.42 23.42 3.5378 0 0 0 0.40738 1 1459 1459 0.79363 0 1 + 32207 24567 20485 20496 37024 37024 0.009910502335742422 PWIKLPIYT 9 Unmodified _PWIKLPIYT_ 0 0 0 ENST00000463983.5_1_9:33443205-33447528:-|nuORF;nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3 ENST00000463983.5_1_9:33443205-33447528:-|nuORF ENST00000463983.5_1_9:33443205-33447528:-|nuORF MSMS UPN46_class_I_Rep_3 1 565.7857666015625 2 565.83406 1129.65357 NaN NaN NaN NaN NaN NaN NaN 23.325 1 23.325 22.825 23.825 0 0 0 0 0.39518 1 2907 2907 1.8442 0 1 32208 4170 20486 20497 37025 37025 0.09392667413499112 PWIKMWLI 8 Unmodified _PWIKMWLI_ 0 0 0 REV__L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|208|3|anti-sense REV__L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|208|3|anti-sense MSMS UPN48_class_I_Rep_3 7 543.8130493164062 2 543.812073 1085.60959 NaN NaN NaN NaN NaN NaN NaN 32.131 1 35.833 35.333 36.333 3.7015 0 0 0 0.40738 1 4845 4845 0.79363 0 1 + 32209 24469 20487 20498 37026 37026 0.07021359715531617 PWILYYEY 8 Unmodified _PWILYYEY_ 0 0 0 REV__MLT1D_dup13810|chr11:78359805-78360284:+|1.1791065155303655|0.0059821403584888|7.62|151.0|27|2|anti-sense REV__MLT1D_dup13810|chr11:78359805-78360284:+|1.1791065155303655|0.0059821403584888|7.62|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7811279296875 2 573.778951 1145.54335 NaN NaN NaN NaN NaN NaN NaN 74.071 1 77.457 76.957 77.957 3.3861 0 0 0 0.4044 1 18216 18216 4.756 0.81161 1 + 32210 31668 20488 20499 37027 37027 -0.023601776455507206 PWIWMKMR 8 Unmodified _PWIWMKMR_ 0 0 0 REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF MSMS UPN47_class_I_Rep_2 3 574.2991333007812 2 574.298807 1146.58306 NaN NaN NaN NaN NaN NaN NaN 74.791 1 78.104 77.604 78.604 3.3127 0 0 0 0.40738 1 18440 18440 0.79363 0.10326 1 + 32211 22359 20489 20500 37028 37028 0.01563347552541927 PWKAKHIF 8 Unmodified _PWKAKHIF_ 0 0 0 ENST00000256062.9_2_12:29920912-29937294:-|nuORF ENST00000256062.9_2_12:29920912-29937294:-|nuORF ENST00000256062.9_2_12:29920912-29937294:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.7970581054688 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 91.893 1 91.893 91.393 92.393 0 0 0 0 0.40364 1 22217 22217 5.7604 0.46354 1 32212 5926 20490 20501 37029 37029 0.06930378130596182 PWKKGLKFI 9 Unmodified _PWKKGLKFI_ 0 0 0 REV__Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|24|2|sense REV__Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 558.8511352539062 2 558.850045 1115.68554 NaN NaN NaN NaN NaN NaN NaN 89.226 1 92.9 92.4 93.4 3.6738 0 0 0 0.4007 1 22307 22307 0.52476 0 1 + 32213 32571 20491 20502 37030 37030 0.132320798873252 PWLAGKPL 8 Unmodified _PWLAGKPL_ 0 0 0 REV__L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|26|2|sense REV__L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|26|2|sense MSMS UPN46_class_I_Rep_3 1 441.2579345703125 2 441.265813 880.517074 NaN NaN NaN NaN NaN NaN NaN 31.568 1 31.568 31.068 32.068 0 0 0 0 0.40738 1 5292 5292 0.79363 0 1 + 32214 28918 20492 20503 37031 37031 0.07203597973659726 PWLCLFAL 8 Unmodified _PWLCLFAL_ 0 0 0 REV__MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|33|3|anti-sense REV__MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.76263427734375 2 481.762049 961.509546 NaN NaN NaN NaN NaN NaN NaN 81.267 1 84.754 84.254 85.254 3.4874 0 0 0 0.40581 1 20275 20275 2.8892 0 1 + 32215 31672 20493 20504 37032 37032 0.02725122381730216 PWLEQLKH 8 Unmodified _PWLEQLKH_ 0 0 0 THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 525.7909545898438 2 525.790184 1049.56581 0.4324 0.00022735 0.804 0.00042273 1.2364 0.00065008 526.292136949285 26.573 0.08066 30.206 30.174 30.254 3.6332 10 8 2 0 0 0 0.72333 1 3411 3411 2.5775 0 1 29461 32216 32928 20494 20505 37033 37033 0.04301466542779053 PWLEQLKH 8 Unmodified _PWLEQLKH_ 0 0 0 THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense THE1B-int_dup3877|chr16:56379444-56380994:-|1.1527336603022718|0.1186580015595597|3.28|151.0|68|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 525.790184 1049.56581 0.38422 0.00020202 1.1366 0.0005976 1.5208 0.00079962 525.7907268767542 26.358 0.038609 29.925 29.898 29.937 3.5667 -0.14074 0.00016246 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 41387 32217 32928 20494 20505 0.04301466542779053 PWLFIPLP 8 Unmodified _PWLFIPLP_ 0 0 0 ENST00000479872.5_1_1:165879160-165879211:+|nuORF ENST00000479872.5_1_1:165879160-165879211:+|nuORF ENST00000479872.5_1_1:165879160-165879211:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 491.7919616699219 2 491.791664 981.568775 0.29884 0.00014697 0.23815 0.00011712 0.53699 0.00026409 491.7917373034376 89.708 0.24675 89.708 89.547 89.794 0 32 22 3 0 0 0 0.82752 1 21556 21556 2.8892 0.82947 1 543670 32218 6991 20495 20506 37034 37034 0.07725341667548946 PWLLAAISL 9 Unmodified _PWLLAAISL_ 0 0 0 MLT1L_dup1713|chr2:197249993-197250572:-|2.422926754509476|0.2387919525433464|3.34|151.0|29|2|anti-sense MLT1L_dup1713|chr2:197249993-197250572:-|2.422926754509476|0.2387919525433464|3.34|151.0|29|2|anti-sense MLT1L_dup1713|chr2:197249993-197250572:-|2.422926754509476|0.2387919525433464|3.34|151.0|29|2|anti-sense MSMS UPN48_class_I_Rep_3 7 492.302001953125 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 67.851 1 71.359 70.859 71.859 3.5077 0 0 0 0.36505 1 15520 15520 7.2892 0 1 32219 16485 20496 20507 37035 37035 0.09316422833660454 PWLLCVVI 8 Unmodified _PWLLCVVI_ 0 0 0 REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense MSMS UPN47_class_I_Rep_1 2 471.7957458496094 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 74.203 1 77.597 77.097 78.097 3.3937 0 0 0 0.39167 1 18254 18254 11.114 1.767 1 + 32220 32617 20497 20508 37036 37036 0.06773695415813563 PWLLCVVI 8 Unmodified _PWLLCVVI_ 0 0 0 REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense MSMS UPN48_class_I_Rep_2 6 471.7779235839844 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 74.064 1 77.642 77.142 78.142 3.5779 0 0 0 0.37152 1 17417 17417 17.087 3.5787 1 + 32221 32617 20497 20508 37037 37037 0.06773695415813563 PWLLCVVI 8 Unmodified _PWLLCVVI_ 0 0 0 REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense MSMS UPN48_class_I_Rep_2 6 471.77911376953125 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 74.165 1 77.743 77.243 78.243 3.5779 0 0 0 0.39167 1 17443 17443 11.114 2.5212 1 + 32222 32617 20497 20508 37038 37038 0.06773695415813563 PWLLCVVI 8 Unmodified _PWLLCVVI_ 0 0 0 REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense MSMS UPN48_class_I_Rep_2 6 471.7951965332031 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 74.218 1 77.795 77.295 78.295 3.5779 0 0 0 0.4032 1 17456 17456 6.3541 1.1234 1 + 32223 32617 20497 20508 37039 37039 0.06773695415813563 PWLLCVVI 8 Unmodified _PWLLCVVI_ 0 0 0 REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense REV__Tigger19a_dup434|chr1:246267085-246267272:-|1.179091871301336|0.015308920990958|6.27|150.0|3|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 471.7790222167969 2 471.777699 941.540846 0.25595 0.00012075 2.5879 0.0012209 2.8438 0.0013417 471.7786505121484 73.977 0.070084 77.527 77.495 77.565 3.5505 12 8 2 0 0 0 0.82752 1 17329 17329 17.087 3.5787 1 90181 + 32224 32617 20497 20508 37040 37040 0.06773695415813563 PWLLCYCYF 9 Unmodified _PWLLCYCYF_ 0 0 0 REV__L1ME3A_dup15515|chr22:25683223-25684484:-|1.113764223669975|0.0815098896938384|3.77|151.0|54|1|anti-sense REV__L1ME3A_dup15515|chr22:25683223-25684484:-|1.113764223669975|0.0815098896938384|3.77|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_1 2 604.2695922851562 2 604.269381 1206.52421 NaN NaN NaN NaN NaN NaN NaN 33.729 1 37.428 36.928 37.928 3.6983 0 0 0 0.40038 1 5977 5977 0.6015 0 1 + 32225 28006 20498 20509 37041 37041 -0.0707917353247467 PWLLGLFH 8 Unmodified _PWLLGLFH_ 0 0 0 L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|152|3|anti-sense L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|152|3|anti-sense L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|152|3|anti-sense MSMS UPN48_class_I_Rep_1 5 491.795654296875 2 491.779088 981.543623 NaN NaN NaN NaN NaN NaN NaN 46.706 1 50.226 49.726 50.726 3.5192 0 0 0 0.40581 1 9150 9150 2.8892 0 1 32226 13946 20499 20510 37042 37042 0.05211286864982867 PWLLGLFH 8 Unmodified _PWLLGLFH_ 0 0 0 L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|152|3|anti-sense L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|152|3|anti-sense L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|152|3|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7958679199219 2 491.779088 981.543623 NaN NaN NaN NaN NaN NaN NaN 46.143 1 49.901 49.401 50.401 3.7579 0 0 0 0.40581 1 8984 8984 2.8892 0 1 32227 13946 20499 20510 37043 37043 0.05211286864982867 PWLLTAHY 8 Unmodified _PWLLTAHY_ 0 0 0 REV__ENST00000527564.1_1_4:102269031-102269525:+|nuORF REV__ENST00000527564.1_1_4:102269031-102269525:+|nuORF MSMS UPN47_class_I_Rep_1 2 500.7513427734375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 26.182 1 29.944 29.444 30.444 3.7624 0 0 0 0.40738 1 3708 3708 0.79363 0 1 + 32228 22820 20500 20511 37044 37044 0.01802392622687421 PWLLTAHY 8 Unmodified _PWLLTAHY_ 0 0 0 REV__ENST00000527564.1_1_4:102269031-102269525:+|nuORF REV__ENST00000527564.1_1_4:102269031-102269525:+|nuORF MSMS UPN47_class_I_Rep_2 3 500.7654113769531 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 41.882 1 45.248 44.748 45.748 3.3655 0 0 0 0.40738 1 8484 8484 0.79363 0 1 + 32229 22820 20500 20511 37045 37045 0.01802392622687421 PWLRMYHC 8 Unmodified _PWLRMYHC_ 0 0 0 L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|64|1|anti-sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|64|1|anti-sense L1MD1_dup1745|chr4:99910861-99912482:-|1.7032870299884613|0.3237204411978132|2.4|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_1 5 553.255615234375 2 553.257139 1104.49973 NaN NaN NaN NaN NaN NaN NaN 115.33 1 118.96 118.46 119.46 3.6282 0 0 0 0.40738 1 28053 28053 0.79363 0 1 32230 11917 20501 20512 37046 37046 -0.04834388895324082 PWLVVRLLY 9 Unmodified _PWLVVRLLY_ 0 0 0 REV__L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|280|3|anti-sense REV__L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|280|3|anti-sense MSMS UPN46_class_I_Rep_3 1 579.8965454101562 2 579.855327 1157.6961 NaN NaN NaN NaN NaN NaN NaN 54.129 1 54.129 53.629 54.629 0 0 0 0 0.39428 1 11698 11698 2.0598 0.86641 1 + 32231 29183 20502 20513 37047 37047 0.12356062541743995 PWLWMRTL 8 Unmodified _PWLWMRTL_ 0 0 0 REV__ENST00000382329.1_1_9:418124-418157:+|nuORF REV__ENST00000382329.1_1_9:418124-418157:+|nuORF MSMS UPN48_class_I_Rep_1 5 552.2852172851562 2 551.796955 1101.57936 NaN NaN NaN NaN NaN NaN NaN 62.529 1 65.992 65.492 66.492 3.4625 0 0 0 0.40581 1 14002 14002 2.8892 0 1 + 32232 22068 20503 20514 37048 37048 0.032630010503226003 PWLWMRTL 8 Unmodified _PWLWMRTL_ 0 0 0 REV__ENST00000382329.1_1_9:418124-418157:+|nuORF REV__ENST00000382329.1_1_9:418124-418157:+|nuORF MSMS UPN48_class_I_Rep_2 6 551.7850952148438 2 551.796955 1101.57936 NaN NaN NaN NaN NaN NaN NaN 62.654 1 66.128 65.628 66.628 3.4738 0 0 0 0.40581 1 14021 14021 2.8892 0 1 + 32233 22068 20503 20514 37049 37049 0.032630010503226003 PWLYEFRF 8 Unmodified _PWLYEFRF_ 0 0 0 REV__nc|ENSG00000204178|Q8N5G2-3|MACO1 REV__nc|ENSG00000204178|Q8N5G2-3|MACO1 MSMS UPN47_class_I_Rep_3 4 579.7590942382812 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 38.247 1 41.489 40.989 41.989 3.2414 0 0 0 0.40738 1 7424 7424 0.79363 0 1 + 32234 21178 20504 20515 37050 37050 -0.0014564931448148855 PWLYVGMVF 9 Unmodified _PWLYVGMVF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D nc|ENSG00000012817|Q9BY66-2|KDM5D MSMS UPN47_class_I_Rep_3 4 556.2879028320312 2 556.285889 1110.55722 NaN NaN NaN NaN NaN NaN NaN 102.69 1 106.2 105.7 106.7 3.5057 0 0 0 0.39326 1 25232 25232 2.3027 0.24298 1 32235 783 20505 20516 37051 37051 0.006367765819277338 PWLYVRRWP 9 Unmodified _PWLYVRRWP_ 0 0 0 REV__ENST00000253329.2_1_6:149862180-149862721:-|nuORF REV__ENST00000253329.2_1_6:149862180-149862721:-|nuORF MSMS UPN48_class_I_Rep_1 5 636.85400390625 2 636.85365 1271.69275 NaN NaN NaN NaN NaN NaN NaN 55.567 1 59.075 58.575 59.575 3.5082 0 0 0 0.4007 1 11873 11873 0.52476 0 1 + 32236 21527 20506 20517 37052 37052 0.06776812487737516 PWMLYNRL 8 Unmodified _PWMLYNRL_ 0 0 0 REV__MLT1A0-int_dup515|chr8:120684955-120686267:-|1.660840806194272|0.0442254218825457|5.23|151.0|2|1|sense REV__MLT1A0-int_dup515|chr8:120684955-120686267:-|1.660840806194272|0.0442254218825457|5.23|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 546.7881469726562 2 546.786587 1091.55862 NaN NaN NaN NaN NaN NaN NaN 25.006 1 28.573 28.073 29.073 3.5667 0 0 0 0.40738 1 2846 2846 0.79363 0 1 + 32237 31603 20507 20518 37053 37053 0.016504106706634047 PWMMVVHP 8 Unmodified _PWMMVVHP_ 0 0 0 REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 498.7433776855469 2 498.743334 995.472114 0.309 0.00015411 0.113 5.636E-05 0.422 0.00021047 498.7432425391757 89.679 0.4732 89.679 89.547 90.02 0 95 38 3 0 0 0 0.82752 1 21563 21563 0.79363 0 1 854220 + 32238 22500 20508 20519 37054 37054 -0.02580292155528241 PWMMVVHP 8 Unmodified _PWMMVVHP_ 0 0 0 REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 498.743334 995.472114 0.34858 0.00017385 -0.17705 -8.8302E-05 0.17153 8.5549E-05 498.7431629715751 86.3 0.49277 89.733 89.497 89.99 3.4329 0.0089173 2.3344E-05 NaN 0.79363 115 67 2 NaN NaN NaN NaN 0 NaN NaN 0 138370 + 32239 22500 20508 20519 -0.02580292155528241 PWMMVVHP 8 Unmodified _PWMMVVHP_ 0 0 0 REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 498.743334 995.472114 0.26946 0.00013439 -0.35772 -0.00017841 -0.088255 -4.4017E-05 498.743105296431 86.388 0.4295 89.768 89.588 90.018 3.3801 0.044439 -0.00015687 NaN 0.79363 96 54 2 NaN NaN NaN NaN 0 NaN NaN 0 164150 + 32240 22500 20508 20519 -0.02580292155528241 PWPAIMMEGD 10 Unmodified _PWPAIMMEGD_ 0 0 0 REV__nc|ENSG00000173928|Q6NVH7|SWSAP1 REV__nc|ENSG00000173928|Q6NVH7|SWSAP1 MSMS UPN47_class_I_Rep_3 4 573.7523193359375 2 573.751553 1145.48855 NaN NaN NaN NaN NaN NaN NaN 114.84 1 118.32 117.82 118.82 3.4802 0 0 0 0.53105 1 28219 28219 3.9444 1.8846 1 + 32241 20503 20509 20520 37055 37055 -0.0783725578010035 PWPAPRRPR 9 Unmodified _PWPAPRRPR_ 0 0 0 REV__ENST00000481474.5_1_6:28891330-28891657:-|nuORF REV__ENST00000481474.5_1_6:28891330-28891657:-|nuORF MSMS UPN48_class_I_Rep_3 7 566.82861328125 2 566.827966 1131.64138 NaN NaN NaN NaN NaN NaN NaN 23.252 1 27.002 26.502 27.502 3.7507 0 0 0 0.40038 1 2515 2515 0.6015 0 1 + 32242 22568 20510 20521 37056 37056 0.08082488513673525 PWPATKTW 8 Unmodified _PWPATKTW_ 0 0 0 LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|12|2|sense LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|12|2|sense LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|12|2|sense MSMS UPN47_class_I_Rep_2 3 493.7571716308594 2 493.758352 985.502152 NaN NaN NaN NaN NaN NaN NaN 109.27 1 112.8 112.3 113.3 3.5307 0 0 0 0.40364 1 26606 26606 5.7604 1.0044 1 32243 15706 20511 20522 37057 37057 0.008821061056551116 PWPCMRFATR 10 Unmodified _PWPCMRFATR_ 0 0 0 REV__L1ME4a_dup28811|chr15:90019126-90019528:-|1.3220892467871113|0.0115155445825711|6.84|150.0|1|1|sense REV__L1ME4a_dup28811|chr15:90019126-90019528:-|1.3220892467871113|0.0115155445825711|6.84|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 632.8067626953125 2 632.807528 1263.6005 NaN NaN NaN NaN NaN NaN NaN 41.17 1 44.842 44.342 45.342 3.6719 0 0 0 0.53105 1 8238 8238 1.4819 0.15237 1 + 32244 28228 20512 20523 37058 37058 -0.020753569124735805 PWPCTSAWPGC 11 Unmodified _PWPCTSAWPGC_ 0 0 0 REV__ENST00000403150.5_1_7:1580646-1582276:+|nuORF REV__ENST00000403150.5_1_7:1580646-1582276:+|nuORF MSMS UPN48_class_I_Rep_2 6 602.7471923828125 2 602.749344 1203.48414 NaN NaN NaN NaN NaN NaN NaN 27.174 1 30.805 30.305 31.305 3.6311 0 0 0 0.38417 1 3563 3563 1.1933 0.50296 1 + 32245 22163 20513 20524 37059 37059 -0.1094672020303733 PWPLMKRIR 9 Unmodified _PWPLMKRIR_ 0 0 0 HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|22|1|sense HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|22|1|sense HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|22|1|sense MSMS UPN47_class_I_Rep_1 2 598.8580932617188 2 598.857878 1195.7012 NaN NaN NaN NaN NaN NaN NaN 55.04 1 58.541 58.041 59.041 3.5014 0 0 0 0.4007 1 12462 12462 0.52476 0 1 32246 8101 20514 20525 37060 37060 0.11118043132682942 PWPLSDKK 8 Unmodified _PWPLSDKK_ 0 0 0 ENST00000572691.2_2_16:3184636-3184819:-|nuORF ENST00000572691.2_2_16:3184636-3184819:-|nuORF ENST00000572691.2_2_16:3184636-3184819:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.7720031738281 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 24.951 1 28.587 28.087 29.087 3.6363 0 0 0 0.40738 1 2967 2967 0.79363 0 1 32247 7519 20515 20526 37061 37061 0.04238375277122941 PWPLSDKK 8 Unmodified _PWPLSDKK_ 0 0 0 ENST00000572691.2_2_16:3184636-3184819:-|nuORF ENST00000572691.2_2_16:3184636-3184819:-|nuORF ENST00000572691.2_2_16:3184636-3184819:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.7729187011719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 113.9 1 117.56 117.06 118.06 3.663 0 0 0 0.40738 1 27199 27199 0.79363 0 1 32248 7519 20515 20526 37062 37062 0.04238375277122941 PWPQLIVQ 8 Unmodified _PWPQLIVQ_ 0 0 0 REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7816162109375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 27.002 1 30.565 30.065 31.065 3.5629 0 0 0 0.40625 1 3408 3408 2.3027 0 1 + 32249 16965 20516 20527 37063 37063 0.05850965656804874 PWPQLIVQ 8 Unmodified _PWPQLIVQ_ 0 0 0 REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.78155517578125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.76 1 116.39 115.89 116.89 3.6321 0 0 0 0.40746 1 27373 27373 0.69038 0 1 + 32250 16965 20516 20527 37064 37064 0.05850965656804874 PWPQLIVQ 8 Unmodified _PWPQLIVQ_ 0 0 0 REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_3 7 490.7820739746094 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 22.857 1 26.608 26.108 27.108 3.7507 0 0 0 0.40746 1 2402 2402 0.69038 0 1 + 32251 16965 20516 20527 37065 37065 0.05850965656804874 PWPQSTTDTL 10 Unmodified _PWPQSTTDTL_ 0 0 0 L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|154|1|anti-sense L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|154|1|anti-sense L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|154|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 573.2778930664062 2 573.277303 1144.54005 0.047911 2.7466E-05 -0.040929 -2.3464E-05 0.0069815 4.0024E-06 573.277247905494 17.941 0.76921 21.328 21.015 21.785 3.387 128 86 2 0 0 0 0.56333 1 1356 1356 1.4819 1.4819 1 47231 32252 15462 20517 20528 37066 37066 -0.026434724901946538 PWPWLAAAA 9 Unmodified _PWPWLAAAA_ 0 0 0 L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|333|2|anti-sense L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|333|2|anti-sense L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|333|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 491.7920837402344 2 491.760895 981.507237 0.29876 0.00014692 3.0854 0.0015173 3.3842 0.0016642 491.76250408322534 89.754 0.061462 89.754 89.715 89.777 0 6 4 2 0 0 0 0.12182 1 21600 21600 5.2307 0.90143 1 77007 32253 15090 20518 20529 37067 37067 0.015744099682478918 PWRGAKSKE 9 Unmodified _PWRGAKSKE_ 0 0 0 REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|60|2|sense REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|60|2|sense MSMS UPN48_class_I_Rep_2 6 529.7914428710938 2 529.790715 1057.56688 NaN NaN NaN NaN NaN NaN NaN 27.526 1 31.157 30.657 31.657 3.6311 0 0 0 0.39598 1 3659 3659 1.6526 0.96225 1 + 32254 29053 20519 20530 37068 37068 0.04039680911660071 PWRKRLLLN 9 Unmodified _PWRKRLLLN_ 0 0 0 ENST00000261167.6_1_12:14939785-14939992:-|nuORF ENST00000261167.6_1_12:14939785-14939992:-|nuORF ENST00000261167.6_1_12:14939785-14939992:-|nuORF MSMS UPN47_class_I_Rep_1 2 598.3760375976562 2 598.374749 1194.73495 NaN NaN NaN NaN NaN NaN NaN 101.86 1 105.65 105.15 106.15 3.7888 0 0 0 0.4007 1 25100 25100 0.52476 0 1 32255 5954 20520 20531 37069 37069 0.14536787896145142 PWRMLPVQL 9 Unmodified _PWRMLPVQL_ 0 0 0 L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|109|1|anti-sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|109|1|anti-sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|109|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.3228759765625 2 570.323337 1138.63212 -0.14207 -8.1025E-05 -0.36257 -0.00020678 -0.50464 -0.00028781 570.3230196372364 12.916 0.17603 16.366 16.301 16.477 3.45 30 13 3 0 0 0 0.46434 1 183 183 4.3292 0 1 109670 32256 8762 20521 20532 37070 37070 0.06834959113143668 PWRRRQRWRRR 11 Unmodified _PWRRRQRWRRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS UPN48_class_I_Rep_3 7 570.3352661132812 3 570.336713 1707.98831 NaN NaN NaN NaN NaN NaN NaN 25.62 1 29.389 28.889 29.889 3.769 0 0 0 0.38417 1 3143 3143 0 0 1 32257 6403 20522 20533 37071 37071 0.16263453118926918 PWRSLKKY 8 Unmodified _PWRSLKKY_ 0 0 0 REV__ENST00000549711.5_1_12:112487373-112518932:-|nuORF REV__ENST00000549711.5_1_12:112487373-112518932:-|nuORF MSMS UPN48_class_I_Rep_2 6 539.2776489257812 2 539.313826 1076.6131 NaN NaN NaN NaN NaN NaN NaN 36.009 1 39.697 39.197 40.197 3.6877 0 0 0 0.40472 1 6008 6008 4.3292 0.38484 1 + 32258 18452 20523 20534 37072 37072 0.07785745813771427 PWSHRYKI 8 Unmodified _PWSHRYKI_ 0 0 0 REV__ENSG00000162998|ENST00000295113|FRZB REV__ENSG00000162998|ENST00000295113|FRZB MULTI-MSMS UPN48_class_I_Rep_1 5 543.7955932617188 2 543.795801 1085.57705 0.58335 0.00031722 -0.16805 -9.1383E-05 0.41531 0.00022584 543.7956428164946 60.768 1.0674 64.241 63.78 64.847 3.4737 273 87 4 0 0 0 0.82752 1 13560 13560 26.884 0 1 3646300 + 32259 19956 20524 20535 37073 37073 0.03768288636888428 PWSHRYKI 8 Unmodified _PWSHRYKI_ 0 0 0 REV__ENSG00000162998|ENST00000295113|FRZB REV__ENSG00000162998|ENST00000295113|FRZB MULTI-MSMS UPN48_class_I_Rep_2 6 543.7954711914062 2 543.795801 1085.57705 0.55038 0.00029929 -0.087437 -4.7548E-05 0.46294 0.00025174 543.795666194678 60.637 1.0669 64.116 63.739 64.806 3.4785 288 96 4 0 0 0 0.82752 1 13505 13505 34.102 0 1 5209600 + 32260 19956 20524 20535 37074 37074 0.03768288636888428 PWSHRYKI 8 Unmodified _PWSHRYKI_ 0 0 0 REV__ENSG00000162998|ENST00000295113|FRZB REV__ENSG00000162998|ENST00000295113|FRZB MULTI-MSMS UPN48_class_I_Rep_3 7 543.7955322265625 2 543.795801 1085.57705 0.49202 0.00026756 -0.058359 -3.1735E-05 0.43366 0.00023582 543.7956828423528 60.5 1.1724 64.017 63.63 64.803 3.5169 298 108 4 0 0 0 0.82752 1 13397 13397 14.838 0 1 4454700 + 32261 19956 20524 20535 37075 37075 0.03768288636888428 PWTFEVSKL 9 Unmodified _PWTFEVSKL_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MSMS UPN47_class_I_Rep_2 3 553.8131103515625 2 553.797675 1105.5808 NaN NaN NaN NaN NaN NaN NaN 38.926 1 42.304 41.804 42.804 3.3785 0 0 0 0.38784 1 7590 7590 3.5965 0.31518 1 + 32262 18514 20525 20536 37076 37076 0.03222913620084 PWTFEVSKL 9 Unmodified _PWTFEVSKL_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MSMS UPN47_class_I_Rep_3 4 553.7963256835938 2 553.797675 1105.5808 NaN NaN NaN NaN NaN NaN NaN 38.764 1 42.002 41.502 42.502 3.238 0 0 0 0.39518 1 7584 7584 1.8442 0 1 + 32263 18514 20525 20536 37077 37077 0.03222913620084 PWTLLPHM 8 Unmodified _PWTLLPHM_ 0 0 0 ENST00000496281.1_1_20:62320320-62321363:+|nuORF ENST00000496281.1_1_20:62320320-62321363:+|nuORF ENST00000496281.1_1_20:62320320-62321363:+|nuORF MSMS UPN46_class_I_Rep_3 1 497.763671875 2 497.762581 993.510608 NaN NaN NaN NaN NaN NaN NaN 114.39 1 114.39 113.89 114.89 0 0 0 0 0.40604 1 28270 28270 2.5775 0 1 32264 7097 20526 20537 37078 37078 0.013593367506246068 PWVFGMVI 8 Unmodified _PWVFGMVI_ 0 0 0 Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|77|2|anti-sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|77|2|anti-sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|77|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.75091552734375 2 474.754224 947.493896 0.2525 0.00011988 -1.1916 -0.00056574 -0.93915 -0.00044586 474.7510123119435 104.24 0.17583 104.24 104.15 104.33 0 30 21 2 0 0 0 0.82752 1 25434 25434 2.8892 0 1 141410 32265 33194 20527 20538 37079 37079 0.018048358646979068 PWVFGMVI 8 Unmodified _PWVFGMVI_ 0 0 0 Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|77|2|anti-sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|77|2|anti-sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|77|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 474.754224 947.493896 0.2525 0.00011988 -1.1916 -0.00056574 -0.93915 -0.00044586 474.7510123119435 104.24 0.17583 104.24 104.15 104.33 0 0 0 NaN 2.8892 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 141410 32266 33194 20527 20538 0.018048358646979068 PWVFQFCKSQ 10 Unmodified _PWVFQFCKSQ_ 0 0 0 REV__L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|38|3|anti-sense REV__L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|38|3|anti-sense MSMS UPN47_class_I_Rep_2 3 635.3084106445312 2 635.307884 1268.60121 NaN NaN NaN NaN NaN NaN NaN 64.531 1 67.787 67.287 68.287 3.2556 0 0 0 0.53105 1 15379 15379 1.1933 0.59184 1 + 32267 27788 20528 20539 37080 37080 -0.02234238991741222 PWVFWIWV 8 Unmodified _PWVFWIWV_ 0 0 0 REV__MSTB1_dup2348|chr9:77863983-77864376:-|1.4800214537889516|0.0047286833926663|8.29|151.0|5|2|sense REV__MSTB1_dup2348|chr9:77863983-77864376:-|1.4800214537889516|0.0047286833926663|8.29|151.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 566.7833251953125 2 566.802563 1131.59057 NaN NaN NaN NaN NaN NaN NaN 16.399 1 19.921 19.421 20.421 3.5224 0 0 0 0.40798 1 1043 1043 0 0 1 + 32268 31899 20529 20540 37081 37081 0.030041464161058684 PWVLSCIKLTS 11 Unmodified _PWVLSCIKLTS_ 0 0 0 REV__Tigger1_dup9780|chr13:100467670-100468741:-|1.024833063631432|0.0691637428428597|3.89|149.0|62|2|anti-sense REV__Tigger1_dup9780|chr13:100467670-100468741:-|1.024833063631432|0.0691637428428597|3.89|149.0|62|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 416.2352600097656 3 416.233653 1245.67913 0.098933 4.1179E-05 2.2971 0.00095615 2.3961 0.00099732 416.2345603139068 103.67 0.10195 107.43 107.37 107.47 3.7627 15 13 2 0 0 0 22.551 1 25472 25472 2.084 0.49169 1 9432400 + 32269 32572 20530 20541 37082 37082 0.06611773873623861 PWVPTALQ 8 Unmodified _PWVPTALQ_ 0 0 0 L1MA2_dup1395|chr3:138492093-138493769:-|1.1702511425535174|0.1138417533008598|3.36|151.0|31|2|sense L1MA2_dup1395|chr3:138492093-138493769:-|1.1702511425535174|0.1138417533008598|3.36|151.0|31|2|sense L1MA2_dup1395|chr3:138492093-138493769:-|1.1702511425535174|0.1138417533008598|3.36|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 456.2513122558594 2 456.252903 910.491253 NaN NaN NaN NaN NaN NaN NaN 88.87 1 88.87 88.37 89.37 0 0 0 0 0.40738 1 21361 21361 0.79363 0 1 32270 9333 20531 20542 37083 37083 0.032427037313595974 PWVQGVVR 8 Unmodified _PWVQGVVR_ 0 0 0 ENST00000554897.5_1_9:34647205-34648116:+|nuORF;ENST00000554139.5_1_9:34647742-34648116:+|nuORF ENST00000554897.5_1_9:34647205-34648116:+|nuORF ENST00000554897.5_1_9:34647205-34648116:+|nuORF MSMS UPN48_class_I_Rep_2 6 470.7723083496094 2 470.771794 939.529036 NaN NaN NaN NaN NaN NaN NaN 75.807 1 79.408 78.908 79.908 3.6011 0 0 0 0.40738 1 17889 17889 0.79363 0 1 32271 7418 20532 20543 37084 37084 0.0568521471685699 PWVWQWDR 8 Unmodified _PWVWQWDR_ 0 0 0 REV__L1PBa1_dup354|chr12:11143879-11145122:-|1.5238192692164518|0.0437429973614473|5.12|151.0|39|1|anti-sense REV__L1PBa1_dup354|chr12:11143879-11145122:-|1.5238192692164518|0.0437429973614473|5.12|151.0|39|1|anti-sense MSMS UPN47_class_I_Rep_1 2 586.7865600585938 2 586.785433 1171.55631 NaN NaN NaN NaN NaN NaN NaN 74.055 1 77.441 76.941 77.941 3.3861 0 0 0 0.40738 1 18211 18211 0.79363 0.10326 1 + 32272 30676 20533 20544 37085 37085 -0.022603017427854866 PWVYSYFQ 8 Unmodified _PWVYSYFQ_ 0 0 0 ENSG00000182329|ENST00000498697|KIAA2012 ENSG00000182329|ENST00000498697|KIAA2012 ENSG00000182329|ENST00000498697|KIAA2012 MSMS UPN47_class_I_Rep_1 2 545.7393188476562 2 545.255643 1088.49673 NaN NaN NaN NaN NaN NaN NaN 118.41 1 122.01 121.51 122.51 3.6036 0 0 0 0.40738 1 29380 29380 0.79363 0 1 32273 4948 20534 20545 37086 37086 -0.043976174768204146 PWVYTRDR 8 Unmodified _PWVYTRDR_ 0 0 0 L1MA9_dup4892|chr5:62308377-62308950:+|1.134026752891835|0.0143220370196365|6.31|151.0|45|3|anti-sense L1MA9_dup4892|chr5:62308377-62308950:+|1.134026752891835|0.0143220370196365|6.31|151.0|45|3|anti-sense L1MA9_dup4892|chr5:62308377-62308950:+|1.134026752891835|0.0143220370196365|6.31|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 546.7826538085938 2 546.78289 1091.55123 NaN NaN NaN NaN NaN NaN NaN 119.8 1 123.42 122.92 123.92 3.6189 0 0 0 0.40738 1 29246 29246 0.79363 0 1 32274 10138 20535 20546 37087 37087 0.009113943946204017 PWWLNWNW 8 Unmodified _PWWLNWNW_ 0 0 0 L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|16|2|sense L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|16|2|sense L1MC4_dup13851|chrX:23728433-23729628:+|1.0511207664629498|0.1064588621171725|3.3|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 601.2815551757812 2 601.282526 1200.5505 NaN NaN NaN NaN NaN NaN NaN 22.485 1 26.045 25.545 26.545 3.5605 0 0 0 0.40738 1 2200 2200 0.79363 0.10326 1 32275 11405 20536 20547 37088 37088 -0.04175400254462147 PWWLWRLL 8 Unmodified _PWWLWRLL_ 0 0 0 chrX:41346622-41347640|135|17.9|0.95|4.24|+|1|DDX3X,DDX3X|1 chrX:41346622-41347640|135|17.9|0.95|4.24|+|1|DDX3X,DDX3X|1 chrX:41346622-41347640|135|17.9|0.95|4.24|+|1|DDX3X,DDX3X|1 MSMS UPN46_class_I_Rep_3 1 585.3324584960938 2 585.334562 1168.65457 NaN NaN NaN NaN NaN NaN NaN 86.984 1 86.984 86.484 87.484 0 0 0 0 0.40625 1 20820 20820 2.3027 0 1 32276 624 20537 20548 37089 37089 0.07698926573061726 PWWPREWA 8 Unmodified _PWWPREWA_ 0 0 0 REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF MSMS UPN47_class_I_Rep_2 3 564.2749633789062 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 25.304 1 28.786 28.286 29.286 3.483 0 0 0 0.40738 1 3492 3492 0.79363 0 1 + 32277 22566 20538 20549 37090 37090 -0.02335686771471046 PWWVTVLV 8 Unmodified _PWWVTVLV_ 0 0 0 REV__HSMAR1_dup580|chr13:112707444-112708390:+|2.287999397874825|0.1459542844218|3.97|151.0|4|1|sense REV__HSMAR1_dup580|chr13:112707444-112708390:+|2.287999397874825|0.1459542844218|3.97|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 500.2850036621094 2 500.286746 998.558939 NaN NaN NaN NaN NaN NaN NaN 28.869 1 32.501 32.001 33.001 3.6311 0 0 0 0.40738 1 4026 4026 0.79363 0 1 + 32278 23958 20539 20550 37091 37091 0.05960153662169887 PWYLPYLM 8 Unmodified _PWYLPYLM_ 0 0 0 THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|48|1|anti-sense THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|48|1|anti-sense THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_2 6 541.77099609375 2 541.772614 1081.53067 NaN NaN NaN NaN NaN NaN NaN 32.01 1 35.651 35.151 36.151 3.641 0 0 0 0.40581 1 4890 4890 2.8892 0 1 32279 32944 20540 20551 37092 37092 -0.006829123094348688 PWYMEYYS 8 Unmodified _PWYMEYYS_ 0 0 0 L1MB8_dup136|chr1:21164872-21165859:+|5.398176286369237|0.0364240556814196|7.21|151.0|28|3|sense L1MB8_dup136|chr1:21164872-21165859:+|5.398176286369237|0.0364240556814196|7.21|151.0|28|3|sense L1MB8_dup136|chr1:21164872-21165859:+|5.398176286369237|0.0364240556814196|7.21|151.0|28|3|sense MSMS UPN47_class_I_Rep_3 4 569.7593994140625 2 569.731143 1137.44773 NaN NaN NaN NaN NaN NaN NaN 24.098 1 27.449 26.949 27.949 3.3509 0 0 0 0.40738 1 3177 3177 0.79363 0 1 32280 10943 20541 20552 37093 37093 -0.1154927382808637 PYADQVFRI 9 Unmodified _PYADQVFRI_ 0 0 0 nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|1|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|4|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|2|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|3|intron nc|ENSG00000198265|P42694-2|HELZ nc|ENSG00000198265|P42694-2|HELZ MULTI-MSMS UPN48_class_I_Rep_1 5 554.793212890625 2 554.792924 1107.57129 0.6134 0.00034031 -0.30575 -0.00016963 0.30765 0.00017068 554.7926837241242 58.511 0.64107 61.998 61.788 62.429 3.487 57 42 2 0 0 0 0.05757 3 12805 12763;12805;12857 45.74 31.158 1 138490 32281 5425 20542 20553 37094;37095;37096 37095 0.021811453345662812 PYADQVFRI 9 Unmodified _PYADQVFRI_ 0 0 0 nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|1|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|4|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|2|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|3|intron nc|ENSG00000198265|P42694-2|HELZ nc|ENSG00000198265|P42694-2|HELZ MULTI-MSMS UPN48_class_I_Rep_2 6 555.2957153320312 2 554.792924 1107.57129 0.5858 0.000325 -0.33648 -0.00018667 0.24932 0.00013832 554.79260630932 58.455 0.67641 61.953 61.646 62.322 3.4987 60 37 2 0 0 0 0.05757 4 12760 12713;12753;12760;12798 45.74 31.158 1 122530 32282 5425 20542 20553 37097;37098;37099;37100 37099 0.021811453345662812 PYADQVFRI 9 Unmodified _PYADQVFRI_ 0 0 0 nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|1|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|4|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|2|intron;ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|3|intron nc|ENSG00000198265|P42694-2|HELZ nc|ENSG00000198265|P42694-2|HELZ MULTI-MSMS UPN48_class_I_Rep_3 7 554.79345703125 2 554.792924 1107.57129 0.34125 0.00018932 0.084833 4.7065E-05 0.42608 0.00023639 554.7928405979867 58.368 0.5062 61.891 61.651 62.157 3.5231 54 32 2 0 0 0 0.05757 5 12617 12592;12617;12651;12657;12701 45.74 31.158 1 132340 32283 5425 20542 20553 37101;37102;37103;37104;37105 37102 0.021811453345662812 PYAFFGHIH 9 Unmodified _PYAFFGHIH_ 0 0 0 HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|58|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|58|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_3 4 544.7836303710938 2 544.769252 1087.52395 NaN NaN NaN NaN NaN NaN NaN 32.477 1 35.763 35.263 36.263 3.2867 0 0 0 0.39326 1 5672 5672 2.3027 0 1 32284 7931 20543 20554 37106 37106 -0.01631089145757869 PYAIFALDF 9 Unmodified _PYAIFALDF_ 0 0 0 REV__ENSG00000268104|ENST00000598581|SLC6A14 REV__ENSG00000268104|ENST00000598581|SLC6A14 MSMS UPN48_class_I_Rep_3 7 528.773193359375 2 528.773668 1055.53278 NaN NaN NaN NaN NaN NaN NaN 94.534 1 98.436 97.936 98.936 3.9016 0 0 0 0.28335 1 22402 22402 11.64 0 1 + 32285 21414 20544 20555 37107 37107 0.00723839700026474 PYAIFALDF 9 Unmodified _PYAIFALDF_ 0 0 0 REV__ENSG00000268104|ENST00000598581|SLC6A14 REV__ENSG00000268104|ENST00000598581|SLC6A14 MSMS UPN48_class_I_Rep_3 7 528.774169921875 2 528.773668 1055.53278 NaN NaN NaN NaN NaN NaN NaN 94.707 1 98.609 98.109 99.109 3.9016 0 0 0 0.28335 1 22445 22445 11.64 0 1 + 32286 21414 20544 20555 37108 37108 0.00723839700026474 PYCRPTAR 8 Unmodified _PYCRPTAR_ 0 0 0 REV__HUERS-P3-int_dup477|chr11:74869998-74873955:+|5.154033615567101|0.4737358408054967|3.44|151.0|7|1|sense REV__HUERS-P3-int_dup477|chr11:74869998-74873955:+|5.154033615567101|0.4737358408054967|3.44|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 482.2442626953125 2 482.245086 962.47562 NaN NaN NaN NaN NaN NaN NaN 117.25 1 120.69 120.19 121.19 3.4425 0 0 0 0.40738 1 28880 28880 0.79363 0 1 + 32287 23973 20545 20556 37109 37109 -0.007119060573359093 PYDKDLFE 8 Unmodified _PYDKDLFE_ 0 0 0 nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-2|MED23 MSMS UPN47_class_I_Rep_3 4 513.7428588867188 2 513.742565 1025.47058 NaN NaN NaN NaN NaN NaN NaN 36.259 1 39.514 39.014 40.014 3.2547 0 0 0 0.40625 1 6815 6815 2.3027 0 1 32288 2006 20546 20557 37110 37110 -0.04113931438951113 PYDQSDEESM 10 Unmodified _PYDQSDEESM_ 0 0 0 ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3 ENSG00000111231|ENST00000228827|GPN3 ENSG00000111231|ENST00000228827|GPN3 MSMS UPN48_class_I_Rep_1 5 600.7218627929688 2 600.721701 1199.42885 NaN NaN NaN NaN NaN NaN NaN 119.71 1 123.33 122.83 123.83 3.6189 0 0 0 0.53105 1 29221 29221 1.6526 0 1 32289 1964 20547 20558 37111 37111 -0.16288899980463611 PYDRTQNKFQ 10 Unmodified _PYDRTQNKFQ_ 0 0 0 L1PB1_dup10548|chr13:49050020-49053171:-|2.086697423167162|0.0347861792639434|5.91|151.0|28|1|sense L1PB1_dup10548|chr13:49050020-49053171:-|2.086697423167162|0.0347861792639434|5.91|151.0|28|1|sense L1PB1_dup10548|chr13:49050020-49053171:-|2.086697423167162|0.0347861792639434|5.91|151.0|28|1|sense MSMS UPN48_class_I_Rep_1 5 648.8199462890625 2 648.820201 1295.62585 NaN NaN NaN NaN NaN NaN NaN 45.296 1 48.812 48.312 49.312 3.5162 0 0 0 0.53105 1 8720 8720 1.1933 0 1 32290 14996 20548 20559 37112 37112 -0.010138875846905648 PYDSPQVSVK 10 Unmodified _PYDSPQVSVK_ 0 0 0 L1PB3_dup1050|chr5:76438743-76440209:-|1.0324357882733652|0.00645634940532|7.32|150.0|24|2|sense L1PB3_dup1050|chr5:76438743-76440209:-|1.0324357882733652|0.00645634940532|7.32|150.0|24|2|sense L1PB3_dup1050|chr5:76438743-76440209:-|1.0324357882733652|0.00645634940532|7.32|150.0|24|2|sense MSMS UPN48_class_I_Rep_3 7 560.2885131835938 2 560.287671 1118.56079 NaN NaN NaN NaN NaN NaN NaN 48.031 1 51.665 51.165 52.165 3.6339 0 0 0 0.53105 1 9490 9490 2.9952 0 1 32291 15238 20549 20560 37113 37113 0.006251178894899567 PYDTVSLFY 9 Unmodified _PYDTVSLFY_ 0 0 0 L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7679443359375 2 552.76604 1103.51753 0.48729 0.00026936 2.3054 0.0012744 2.7927 0.0015437 552.7672192828885 87.037 0.19474 90.674 90.574 90.769 3.6372 37 25 2 0 0 0 0.09884 1 21747 21747 34.102 10.954 1 160950 32292 8864 20550 20561 37114 37114 -0.03009071887800019 PYDTVSLFY 9 Unmodified _PYDTVSLFY_ 0 0 0 L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7686157226562 2 552.76604 1103.51753 NaN NaN NaN NaN NaN NaN NaN 87.312 1 90.752 90.252 91.252 3.4407 0 0 0 0.059724 1 21704 21704 34.102 10.954 1 32293 8864 20550 20561 37115 37115 -0.03009071887800019 PYDTVSLFY 9 Unmodified _PYDTVSLFY_ 0 0 0 L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.76708984375 2 552.76604 1103.51753 NaN NaN NaN NaN NaN NaN NaN 87.369 1 90.81 90.31 91.31 3.4407 0 0 0 0.089203 1 21717 21717 26.884 0.54238 1 32294 8864 20550 20561 37116 37116 -0.03009071887800019 PYDTVSLFY 9 Unmodified _PYDTVSLFY_ 0 0 0 L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|37|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.76806640625 2 552.76604 1103.51753 NaN NaN NaN NaN NaN NaN NaN 87.488 1 90.935 90.435 91.435 3.4471 0 0 0 0.052575 1 21748 21748 36.044 5.8194 1 32295 8864 20550 20561 37117 37117 -0.03009071887800019 PYEMGDRVG 9 Unmodified _PYEMGDRVG_ 0 0 0 REV__ENSG00000090520|ENST00000265028|DNAJB11 REV__ENSG00000090520|ENST00000265028|DNAJB11 MSMS UPN48_class_I_Rep_2 6 512.2334594726562 2 512.231842 1022.44913 NaN NaN NaN NaN NaN NaN NaN 26.081 1 29.714 29.214 30.214 3.6332 0 0 0 0.39598 1 3270 3270 1.6526 0.17072 1 + 32296 18011 20551 20562 37118 37118 -0.06119639739301874 PYEMLYGW 8 Unmodified _PYEMLYGW_ 0 0 0 HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|168|3|sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|168|3|sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|168|3|sense MSMS UPN48_class_I_Rep_1 5 529.2628173828125 2 529.736228 1057.4579 NaN NaN NaN NaN NaN NaN NaN 118.87 1 122.48 121.98 122.98 3.6189 0 0 0 0.40738 1 29004 29004 0.79363 0 1 32297 8046 20552 20563 37119 37119 -0.06852666102827243 PYFFANQEF 9 Unmodified _PYFFANQEF_ 0 0 0 nc|ENSG00000124019|Q9H5Z6-2|FAM124B;ENSG00000124019|ENST00000409685|FAM124B nc|ENSG00000124019|Q9H5Z6-2|FAM124B nc|ENSG00000124019|Q9H5Z6-2|FAM124B MSMS UPN48_class_I_Rep_3 7 581.7649536132812 2 581.763832 1161.51311 NaN NaN NaN NaN NaN NaN NaN 75.302 1 78.868 78.368 79.368 3.5659 0 0 0 0.3377 1 17683 17683 8.7454 3.0136 1 32298 2442 20553 20564 37120 37120 -0.06118536310714262 PYFFLVLR 8 Unmodified _PYFFLVLR_ 0 0 0 REV__L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|109|2|anti-sense REV__L1MDa_dup6375|chr18:79075440-79077566:-|2.012709565607141|0.023239380841091|6.44|150.0|109|2|anti-sense MSMS UPN48_class_I_Rep_1 5 527.8074340820312 2 527.807845 1053.60114 NaN NaN NaN NaN NaN NaN NaN 97.36 1 100.97 100.47 101.47 3.6088 0 0 0 0.40746 1 23486 23486 0.69038 0 1 + 32299 27543 20554 20565 37121 37121 0.07648129070548748 PYFIYLAL 8 Unmodified _PYFIYLAL_ 0 0 0 L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|235|1|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|235|1|anti-sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|235|1|anti-sense MSMS UPN48_class_I_Rep_1 5 500.2637023925781 2 500.281129 998.547705 NaN NaN NaN NaN NaN NaN NaN 34.12 1 37.64 37.14 38.14 3.5201 0 0 0 0.40738 1 5416 5416 0.79363 0 1 32300 9756 20555 20566 37122 37122 0.048373315680123596 PYFLMLAI 8 Unmodified _PYFLMLAI_ 0 0 0 ENSG00000011083|ENST00000230671|SLC6A7 ENSG00000011083|ENST00000230671|SLC6A7 ENSG00000011083|ENST00000230671|SLC6A7 MULTI-MSMS UPN47_class_I_Rep_2 3 484.26873779296875 2 484.269707 966.524861 -0.17646 -8.5452E-05 -0.61845 -0.0002995 -0.79491 -0.00038495 484.2694459739136 21.703 0.83769 25.127 24.768 25.606 3.4241 140 91 2 0 0 0 0.82752 1 2533 2533 2.8892 0 1 82229 32301 767 20556 20567 37123 37123 0.04025989178899181 PYFLRKFF 8 Unmodified _PYFLRKFF_ 0 0 0 TAS2R1|p.N163Mfs*35|1|0.07|ENSG00000169777|chr5:9629545-9629545|T/-|frameshift_variant;ENSG00000169777|ENST00000382492|TAS2R1 TAS2R1|p.N163Mfs*35|1|0.07|ENSG00000169777|chr5:9629545-9629545|T/-|frameshift_variant TAS2R1|p.N163Mfs*35|1|0.07|ENSG00000169777|chr5:9629545-9629545|T/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 559.3120727539062 2 559.313295 1116.61204 NaN NaN NaN NaN NaN NaN NaN 24.133 1 27.599 27.099 28.099 3.4655 0 0 0 0.40738 1 3151 3151 0.79363 0 1 32302 4437 20557 20568 37124 37124 0.058395314448489444 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS UPN48_class_I_Rep_1 5 542.279296875 2 542.279118 1082.54368 0.42757 0.00023186 0.062039 3.3643E-05 0.48961 0.00026551 542.2791549035722 77.827 0.3213 81.349 81.052 81.373 3.5221 54 28 2 0 0 0 0.0055873 2 18516 18481;18516 77.984 56.238 1 1009100 32303 1898 20558 20569 37125;37126 37126 0.0057124207430661045 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS UPN48_class_I_Rep_1 5 542.2794189453125 2 542.279118 1082.54368 0.42809 0.00023215 -0.0059012 -3.2001E-06 0.42219 0.00022895 542.2790214543078 77.905 0.62753 81.427 81.185 81.813 3.5221 130 70 3 0 0 0 0.024782 4 18552 18552;18589;18624;18659 60.39 45.808 1 781690 32304 1898 20558 20569 37127;37128;37129;37130 37127 0.0057124207430661045 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MSMS UPN48_class_I_Rep_1 5 542.279052734375 2 542.279118 1082.54368 NaN NaN NaN NaN NaN NaN NaN 78.408 1 81.943 81.443 82.443 3.5352 0 0 0 0.35339 1 18700 18700 7.9102 1.187 1 32305 1898 20558 20569 37131 37131 0.0057124207430661045 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS UPN48_class_I_Rep_2 6 542.2792358398438 2 542.279118 1082.54368 0.47688 0.0002586 0.046678 2.5313E-05 0.52355 0.00028391 542.2790449763132 77.727 0.85336 81.349 81.006 81.859 3.6223 218 84 4 0 0 0 0.0055873 5 18432 18358;18395;18432;18471;18511 77.984 56.238 1 1455600 32306 1898 20558 20569 37132;37133;37134;37135;37136 37134 0.0057124207430661045 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS UPN48_class_I_Rep_3 7 542.2792358398438 2 542.279118 1082.54368 0.56018 0.00030378 -0.023512 -1.275E-05 0.53667 0.00029103 542.2789921245254 77.774 0.93182 81.376 81.003 81.935 3.6016 236 99 3 0 0 0 0.0055873 5 18393 18321;18360;18393;18429;18463 77.984 59.849 1 1085300 32307 1898 20558 20569 37137;37138;37139;37140;37141 37139 0.0057124207430661045 PYFYVYALS 9 Unmodified _PYFYVYALS_ 0 0 0 L1MB8_dup1554|chr2:73577389-73579056:-|1.0482193151358743|0.0352193878656724|4.9|150.0|106|2|anti-sense L1MB8_dup1554|chr2:73577389-73579056:-|1.0482193151358743|0.0352193878656724|4.9|150.0|106|2|anti-sense L1MB8_dup1554|chr2:73577389-73579056:-|1.0482193151358743|0.0352193878656724|4.9|150.0|106|2|anti-sense MSMS UPN47_class_I_Rep_2 3 561.7794799804688 2 561.778951 1121.54335 NaN NaN NaN NaN NaN NaN NaN 59.126 1 62.408 61.908 62.908 3.2818 0 0 0 0.35339 1 13740 13740 7.9102 0 1 32308 10957 20559 20570 37142 37142 -0.012561776455413565 PYHEKALVNR 10 Unmodified _PYHEKALVNR_ 0 0 0 ENST00000361549.2_1_12:108912031-108913249:+|nuORF;ENSG00000198855|ENST00000552695|FICD ENST00000361549.2_1_12:108912031-108913249:+|nuORF ENST00000361549.2_1_12:108912031-108913249:+|nuORF MSMS UPN48_class_I_Rep_1 5 613.833984375 2 613.835654 1225.65676 NaN NaN NaN NaN NaN NaN NaN 57.9 1 61.395 60.895 61.895 3.4942 0 0 0 0.53105 1 12585 12585 3.2813 0.54611 1 32309 5475 20560 20571 37143 37143 0.052953105202277584 PYHFYLSSI 9 Unmodified _PYHFYLSSI_ 0 0 0 L1M4a2_dup1352|chr11:5671331-5672202:+|1.762785662382815|0.2978803500339018|2.57|151.0|60|3|anti-sense L1M4a2_dup1352|chr11:5671331-5672202:+|1.762785662382815|0.2978803500339018|2.57|151.0|60|3|anti-sense L1M4a2_dup1352|chr11:5671331-5672202:+|1.762785662382815|0.2978803500339018|2.57|151.0|60|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 563.8203125 2 563.782025 1125.5495 0.36036 0.00020316 1.1973 0.00067501 1.5577 0.00087818 563.7848600272122 56.348 0.090748 59.805 59.744 59.835 3.4572 8 4 3 0 0 0 0.12281 1 12853 12853 4.3292 0 1 54249 32310 8967 20561 20572 37144 37144 -0.008256594139993467 PYHPFYSN 8 Unmodified _PYHPFYSN_ 0 0 0 ENST00000402426.2_1_6:73765044-73765512:+|nuORF ENST00000402426.2_1_6:73765044-73765512:+|nuORF ENST00000402426.2_1_6:73765044-73765512:+|nuORF MSMS UPN47_class_I_Rep_3 4 512.7389526367188 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 23.295 1 26.645 26.145 27.145 3.3503 0 0 0 0.40738 1 2936 2936 0.79363 0 1 32311 6599 20562 20573 37145 37145 -0.06575361170723681 PYHPNPLF 8 Unmodified _PYHPNPLF_ 0 0 0 REV__L1MA3_dup2989|chr5:70820663-70821463:-|3.262923346604402|0.0409857086715694|6.31|149.0|56|3|anti-sense REV__L1MA3_dup2989|chr5:70820663-70821463:-|3.262923346604402|0.0409857086715694|6.31|149.0|56|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 492.7502746582031 2 492.750527 983.486502 -0.25855 -0.0001274 -1.6598 -0.00081784 -1.9183 -0.00094525 492.7505781951261 39.351 0.89063 43.017 42.594 43.485 3.6661 146 63 4 0 0 0 0.82752 3 7676 7676;7718;7761 9.3474 0 1 64272 + 32312 25010 20563 20574 37146;37147;37148 37146 -0.005901804114046172 PYILHPNF 8 Unmodified _PYILHPNF_ 0 0 0 L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|318|2|anti-sense L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|318|2|anti-sense L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|318|2|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7664489746094 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 27.911 1 31.468 30.968 31.968 3.5571 0 0 0 0.40738 1 3661 3661 0.79363 0 1 32313 14241 20564 20575 37149 37149 0.018023926227101583 PYKALHDYI 9 Unmodified _PYKALHDYI_ 0 0 0 REV__L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|243|2|anti-sense REV__L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|243|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.296142578125 2 560.295299 1118.57605 0.35143 0.0001969 0.16667 9.3386E-05 0.5181 0.00029029 560.2949654682027 66.743 1.0697 70.101 69.596 70.666 3.3584 174 79 3 0 0 0 0.43153 1 16107 16107 6.2058 0.97511 1 364070 + 32314 29829 20565 20576 37150 37150 0.021500294773204587 PYKALHDYI 9 Unmodified _PYKALHDYI_ 0 0 0 REV__L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|243|2|anti-sense REV__L1PA5_dup9739|chr14:70936131-70942258:-|4.870960535803919|0.3774776880271562|3.69|151.0|243|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.2944946289062 2 560.295299 1118.57605 0.43738 0.00024506 0.075112 4.2085E-05 0.51249 0.00028714 560.2949708556147 66.961 1.0669 70.152 69.825 70.892 3.1914 182 78 3 0 0 0 0.43153 1 16111 16111 6.2058 0 1 302470 + 32315 29829 20565 20576 37151 37151 0.021500294773204587 PYKCLKLTY 9 Unmodified _PYKCLKLTY_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|38|1|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_1 5 564.8095703125 2 564.809728 1127.6049 NaN NaN NaN NaN NaN NaN NaN 102.12 1 105.74 105.24 106.24 3.6153 0 0 0 0.39428 1 24634 24634 2.0598 0 1 + 32316 26987 20566 20577 37152 37152 0.046204307820971735 PYKTANLE 8 Unmodified _PYKTANLE_ 0 0 0 REV__Tigger1_dup5794|chr7:102055278-102056575:+|3.057673384241423|0.011611022497743|8.04|151.0|61|1|anti-sense REV__Tigger1_dup5794|chr7:102055278-102056575:+|3.057673384241423|0.011611022497743|8.04|151.0|61|1|anti-sense MSMS UPN46_class_I_Rep_3 1 468.2443542480469 2 468.245275 934.475997 NaN NaN NaN NaN NaN NaN NaN 93.935 1 93.935 93.435 94.435 0 0 0 0 0.40625 1 22780 22780 2.3027 0.24298 1 + 32317 32481 20567 20578 37153 37153 0.006137921435197313 PYKTEDVQL 9 Unmodified _PYKTEDVQL_ 0 0 0 REV__ENSG00000063127|ENST00000335875|SLC6A16 REV__ENSG00000063127|ENST00000335875|SLC6A16 MULTI-MSMS UPN48_class_I_Rep_1 5 546.7815551757812 2 546.782222 1091.54989 0.47862 0.0002617 -0.70269 -0.00038422 -0.22407 -0.00012252 546.781598755428 37.701 0.50346 41.206 40.951 41.454 3.5052 89 50 2 0 0 0 0.36392 1 6387 6387 10.074 0 1 129020 + 32318 17729 20568 20579 37154 37154 0.007777155151643456 PYKTEDVQL 9 Unmodified _PYKTEDVQL_ 0 0 0 REV__ENSG00000063127|ENST00000335875|SLC6A16 REV__ENSG00000063127|ENST00000335875|SLC6A16 MULTI-MSMS UPN48_class_I_Rep_3 7 546.7822265625 2 546.782222 1091.54989 0.36999 0.00020231 -0.78081 -0.00042693 -0.41082 -0.00022463 546.7815989708954 37.443 0.62175 41.106 40.824 41.446 3.663 103 63 2 0 0 0 0.43153 1 6240 6240 6.2058 0 1 163260 + 32319 17729 20568 20579 37155 37155 0.007777155151643456 PYKVTQDEL 9 Unmodified _PYKVTQDEL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_1 5 546.7826538085938 2 546.782222 1091.54989 0.47862 0.0002617 -0.70269 -0.00038422 -0.22407 -0.00012252 546.781598755428 37.701 0.50346 41.206 40.951 41.454 3.5052 89 50 2 0 0 0 0.17857 3 6422 6422;6438;6477 22.775 7.5265 1 129020 32320 2105 20569 20580 37156;37157;37158 37156 0.007777155151643456 PYKVTQDEL 9 Unmodified _PYKVTQDEL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_2 6 546.7819213867188 2 546.782222 1091.54989 0.45242 0.00024738 -0.56057 -0.00030651 -0.10815 -5.9133E-05 546.7817257723534 37.333 0.57388 41.035 40.792 41.366 3.7022 108 61 2 0 0 0 0.16799 2 6384 6384;6419 23.79 9.2081 1 162800 32321 2105 20569 20580 37159;37160 37159 0.007777155151643456 PYKVTQDEL 9 Unmodified _PYKVTQDEL_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN48_class_I_Rep_3 7 546.7821044921875 2 546.782222 1091.54989 0.36999 0.00020231 -0.78081 -0.00042693 -0.41082 -0.00022463 546.7815989708954 37.443 0.62175 41.106 40.824 41.446 3.663 103 63 2 0 0 0 0.071184 4 6309 6272;6309;6342;6347 40.725 16.935 1 163260 32322 2105 20569 20580 37161;37162;37163;37164 37162 0.007777155151643456 PYLAGWLVI 9 Unmodified _PYLAGWLVI_ 0 0 0 REV__ENST00000553162.5_1_12:57881873-57883795:+|nuORF REV__ENST00000553162.5_1_12:57881873-57883795:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 516.2997436523438 2 516.299853 1030.58515 0.3912 0.00020198 -2.3717 -0.0012245 -1.9805 -0.0010225 516.2983828617545 59.261 0.65096 62.741 62.337 62.988 3.4801 61 39 2 0 0 0 0.37662 1 13040 13040 9.3474 0.75416 1 207430 + 32323 20203 20570 20581 37165 37165 0.07108422833653094 PYLAGWLVI 9 Unmodified _PYLAGWLVI_ 0 0 0 REV__ENST00000553162.5_1_12:57881873-57883795:+|nuORF REV__ENST00000553162.5_1_12:57881873-57883795:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 516.2999877929688 2 516.299853 1030.58515 0.3089 0.00015948 -1.8527 -0.00095657 -1.5438 -0.00079709 516.2991963150832 59.12 0.66017 62.643 62.353 63.013 3.5231 74 43 3 0 0 0 0.10758 1 12855 12855 14.582 1.0738 1 165100 + 32324 20203 20570 20581 37166 37166 0.07108422833653094 PYLCHPVY 8 Unmodified _PYLCHPVY_ 0 0 0 REV__L1PA13_dup8123|chr17:16054948-16055692:+|5.238136227348872|0.2859203034529539|4.2|151.0|42|2|anti-sense REV__L1PA13_dup8123|chr17:16054948-16055692:+|5.238136227348872|0.2859203034529539|4.2|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 496.2824401855469 2 496.238938 990.463324 NaN NaN NaN NaN NaN NaN NaN 21.977 1 25.691 25.191 26.191 3.7144 0 0 0 0.40738 1 2166 2166 0.79363 0 1 + 32325 29131 20571 20582 37167 37167 -0.03228942520365763 PYLCTLVTFV 10 Unmodified _PYLCTLVTFV_ 0 0 0 REV__L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|101|1|anti-sense REV__L1MA3_dup187|chr1:93374061-93377098:+|3.307605146625638|0.4708217490947268|2.81|151.0|101|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 578.3099365234375 2 578.309561 1154.60457 0.50354 0.0002912 1.2632 0.00073054 1.7668 0.0010217 578.3101076458196 106.39 0.09227 106.39 106.36 106.46 0 14 11 2 0 0 0 0.56309 1 25946 25946 1.6526 0 1 193320 + 32326 24987 20572 20583 37168 37168 0.0334501106224252 PYLDSFYEY 9 Unmodified _PYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS UPN48_class_I_Rep_1 5 598.7611694335938 2 598.760955 1195.50736 0.4539 0.00027178 0.59312 0.00035514 1.047 0.00062692 598.7612579015068 73.586 0.42026 77.067 76.839 77.259 3.4812 56 43 2 0 0 0 0.11683 2 17366 17321;17366 30.637 18.996 1 93126 32327 5696 20573 20584 37169;37170 37170 -0.08257679613029723 PYLDSFYEY 9 Unmodified _PYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS UPN48_class_I_Rep_2 6 598.7607421875 2 598.760955 1195.50736 0.47832 0.0002864 0.16817 0.00010069 0.64648 0.00038709 598.7609695045833 73.437 0.26636 77.015 76.79 77.056 3.5779 47 30 2 0 0 0 0.20276 3 17214 17214;17234;17251 20.454 8.8133 1 103770 32328 5696 20573 20584 37171;37172;37173 37171 -0.08257679613029723 PYLDSFYEY 9 Unmodified _PYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS UPN48_class_I_Rep_3 7 599.2628784179688 2 598.760955 1195.50736 0.58389 0.00034961 0.15901 9.5207E-05 0.74289 0.00044482 598.7609966812831 73.376 0.3974 76.913 76.71 77.107 3.5373 66 43 2 0 0 0 0.15122 3 17185 17147;17185;17188 25.399 14.928 1 134830 32329 5696 20573 20584 37174;37175;37176 37175 -0.08257679613029723 PYLFGHFV 8 Unmodified _PYLFGHFV_ 0 0 0 REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|210|3|anti-sense REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|210|3|anti-sense MSMS UPN46_class_I_Rep_3 1 490.2573547363281 2 490.255446 978.496338 NaN NaN NaN NaN NaN NaN NaN 96.957 1 96.957 96.457 97.457 0 0 0 0 0.40581 1 23582 23582 2.8892 0.58649 1 + 32330 30281 20574 20585 37177 37177 0.00623007594003866 PYLFGHFV 8 Unmodified _PYLFGHFV_ 0 0 0 REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|210|3|anti-sense REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|210|3|anti-sense MSMS UPN46_class_I_Rep_3 1 490.2575988769531 2 490.255446 978.496338 NaN NaN NaN NaN NaN NaN NaN 97.338 1 97.338 96.838 97.838 0 0 0 0 0.40581 1 23680 23680 2.8892 0.58649 1 + 32331 30281 20574 20585 37178 37178 0.00623007594003866 PYLFGHFV 8 Unmodified _PYLFGHFV_ 0 0 0 REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|210|3|anti-sense REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|210|3|anti-sense MSMS UPN46_class_I_Rep_3 1 490.2578430175781 2 490.255446 978.496338 NaN NaN NaN NaN NaN NaN NaN 97.676 1 97.676 97.176 98.176 0 0 0 0 0.40581 1 23773 23773 2.8892 2.0956 1 + 32332 30281 20574 20585 37179 37179 0.00623007594003866 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 561.8037719726562 2 561.80276 1121.59097 0.4817 0.00027062 0.80837 0.00045414 1.2901 0.00072476 561.8032889466378 75.047 0.16094 78.537 78.436 78.597 3.49 31 18 2 0 0 0 0.081857 2 17736 17736;17750 38.151 20.016 1 145880 32333 5328 20575 20586 37180;37181 37180 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 561.8041381835938 2 561.80276 1121.59097 0.48105 0.00027025 0.12047 6.768E-05 0.60152 0.00033793 562.304359201961 75.187 0.15487 78.686 78.607 78.762 3.4996 23 17 2 0 0 0 0.25207 1 17809 17809 16.942 4.7016 1 82899 32334 5328 20575 20586 37182 37182 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 562.3078002929688 2 561.80276 1121.59097 0.48128 0.00027039 3.8109 0.002141 4.2922 0.0024114 561.8048166106253 74.919 0.14847 78.409 78.288 78.436 3.49 19 12 3 0 0 0 0.11959 1 17708 17708 7.9102 1.187 1 77535 32335 5328 20575 20586 37183 37183 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 561.80419921875 2 561.80276 1121.59097 0.4865 0.00027332 2.8204 0.0015845 3.3069 0.0018578 561.8039903073559 74.752 0.2001 78.341 78.243 78.443 3.59 35 25 2 0 0 0 0.40174 1 17602 17602 7.9102 3.9658 1 86499 32336 5328 20575 20586 37184 37184 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 561.8032836914062 2 561.80276 1121.59097 0.48657 0.00027335 0.74411 0.00041804 1.2307 0.0006914 561.802987657108 74.927 0.14621 78.517 78.392 78.538 3.59 24 18 2 0 0 0 0.25207 1 17640 17640 16.942 9.0321 1 113330 32337 5328 20575 20586 37185 37185 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 561.80419921875 2 561.80276 1121.59097 0.47326 0.00026588 2.4051 0.0013512 2.8784 0.0016171 561.8039898986942 74.875 0.17657 78.441 78.333 78.509 3.5659 24 16 2 0 0 0 0.0068038 1 17545 17545 85.357 43.262 1 164470 32338 5328 20575 20586 37186 37186 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MSMS UPN48_class_I_Rep_3 7 561.8026733398438 2 561.80276 1121.59097 NaN NaN NaN NaN NaN NaN NaN 75.077 1 78.643 78.143 79.143 3.5659 0 0 0 0.19137 1 17616 17616 16.942 8.1969 1 32339 5328 20575 20586 37187 37187 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 ENST00000579081.5_2_17:29626598-29701170:+|nuORF;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1 ENST00000579081.5_2_17:29626598-29701170:+|nuORF ENST00000579081.5_2_17:29626598-29701170:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 561.80276 1121.59097 0.48637 0.00027324 3.0408 0.0017083 3.5272 0.0019816 561.8045328946929 74.479 0.059677 78.069 78.015 78.075 3.59 -0.17028 -0.00046233 NaN 12.532 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 62335 32340 5328 20575 20586 0.035035213453284086 PYLGYATAAE 10 Unmodified _PYLGYATAAE_ 0 0 0 REV__MSTA-int_dup7|chr1:8443480-8444555:+|1.110408205091761|0.0765046737188405|3.86|151.0|62|3|anti-sense REV__MSTA-int_dup7|chr1:8443480-8444555:+|1.110408205091761|0.0765046737188405|3.86|151.0|62|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.2556762695312 2 528.25584 1054.49713 0.39099 0.00020654 -0.075874 -4.0081E-05 0.31511 0.00016646 528.2557759428327 78.357 0.57613 81.639 81.4 81.976 3.2816 85 61 2 0 0 0 0.33585 2 19568 19540;19568 25.399 9.2502 1 103750 + 32341 31880 20576 20587 37188;37189 37189 -0.027942425476112476 PYLHFRKV 8 Unmodified _PYLHFRKV_ 0 0 0 REV__nc|ENSG00000189212|Q6NXN4|DPY19L2P1 REV__nc|ENSG00000189212|Q6NXN4|DPY19L2P1 MULTI-SECPEP UPN47_class_I_Rep_3 4 529.8082885742188 2 530.308544 1058.60253 0.3831 0.00020316 -0.37879 -0.00020088 0.0043087 2.2849E-06 530.3092929263438 69.469 0.060204 72.673 72.626 72.686 3.2044 6 4 2 0 0 0 0.72333 1 16932 16932 0.79363 0 1 51654 + 32342 32087 20577 20588 37190 37190 0.0755776315932053 PYLLAFRLFV 10 Unmodified _PYLLAFRLFV_ 0 0 0 REV__LTR16D_dup883|chr13:51698997-51699521:+|1.2608226123660349|0.0190916972206839|6.05|151.0|9|2|sense REV__LTR16D_dup883|chr13:51698997-51699521:+|1.2608226123660349|0.0190916972206839|6.05|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 619.8699340820312 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.832 1 90.445 89.945 90.945 3.613 0 0 0 0.53105 1 20803 20803 3.9444 0.3479 1 + 32343 30858 20578 20589 37191 37191 0.11296331713197105 PYLLAFRLFV 10 Unmodified _PYLLAFRLFV_ 0 0 0 REV__LTR16D_dup883|chr13:51698997-51699521:+|1.2608226123660349|0.0190916972206839|6.05|151.0|9|2|sense REV__LTR16D_dup883|chr13:51698997-51699521:+|1.2608226123660349|0.0190916972206839|6.05|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 619.8692016601562 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.911 1 90.701 90.201 91.201 3.7905 0 0 0 0.53105 1 20621 20621 3.9444 0.3479 1 + 32344 30858 20578 20589 37192 37192 0.11296331713197105 PYLLPYNIP 9 Unmodified _PYLLPYNIP_ 0 0 0 REV__L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|54|1|anti-sense REV__L1MA2_dup669|chr2:71370690-71372144:-|5.77231508603336|0.476932325594098|3.6|151.0|54|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 545.2537841796875 2 545.302593 1088.59063 0.48738 0.00026577 -0.70781 -0.00038597 -0.22043 -0.0001202 545.3022093847037 59.022 0.22146 62.303 62.197 62.418 3.2818 21 15 2 0 0 0 0.11705 1 13733 13733 10.824 2.9138 1 60680 + 32345 24935 20579 20590 37193 37193 0.049881016254630595 PYLNKISL 8 Unmodified _PYLNKISL_ 0 0 0 MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|9|1|sense MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|9|1|sense MER4-int_dup952|chr6:25130229-25131330:+|1.3285241025204997|0.0509144621133552|4.71|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2820739746094 2 474.28166 946.548768 0.25175 0.0001194 2.2097 0.001048 2.4614 0.0011674 474.28200026242433 110.51 0.098862 110.51 110.48 110.57 0 21 11 3 0 0 0 0.82752 1 27212 27212 2.5775 0 1 174060 32346 15948 20580 20591 37194 37194 0.07335545936962262 PYLQKKKK 8 Unmodified _PYLQKKKK_ 0 0 0 AluJr_dup58960|chr13:28033053-28033306:+|2.555772431101852|0.0045891293927033|9.12|151.0|2|1|sense AluJr_dup58960|chr13:28033053-28033306:+|2.555772431101852|0.0045891293927033|9.12|151.0|2|1|sense AluJr_dup58960|chr13:28033053-28033306:+|2.555772431101852|0.0045891293927033|9.12|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 516.8325805664062 2 516.831852 1031.64915 NaN NaN NaN NaN NaN NaN NaN 65.54 1 69.019 68.519 69.519 3.4792 0 0 0 0.40746 1 14905 14905 0.69038 0 1 32347 166 20581 20592 37195 37195 0.1345920299061163 PYLQQTTEI 9 Unmodified _PYLQQTTEI_ 0 0 0 REV__nc|ENSG00000010017|Q96S59-2|RANBP9 REV__nc|ENSG00000010017|Q96S59-2|RANBP9 MULTI-MSMS UPN46_class_I_Rep_3 1 546.8010864257812 2 546.782222 1091.54989 0.34215 0.00018708 0.58529 0.00032002 0.92743 0.0005071 546.7825464420732 70.655 0.21079 70.655 70.542 70.752 0 34 21 2 0 0 0 0.28552 1 16266 16266 14.838 0.93222 1 122120 + 32348 17566 20582 20593 37196 37196 0.007777155151643456 PYLTHNPGF 9 Unmodified _PYLTHNPGF_ 0 0 0 REV__nc|ENSG00000142185|O94759-2|TRPM2 REV__nc|ENSG00000142185|O94759-2|TRPM2 MULTI-MSMS UPN48_class_I_Rep_3 7 523.2589111328125 2 523.258717 1044.50288 0.33921 0.0001775 -0.27926 -0.00014613 0.059952 3.1371E-05 523.2585426138373 44.201 0.86192 47.839 47.503 48.365 3.6385 123 59 3 0 0 0 0.26948 1 8367 8367 15.847 0 1 291580 + 32349 19399 20583 20594 37197 37197 -0.017590992453051513 PYLTHNPGF 9 Unmodified _PYLTHNPGF_ 0 0 0 REV__nc|ENSG00000142185|O94759-2|TRPM2 REV__nc|ENSG00000142185|O94759-2|TRPM2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 523.258717 1044.50288 0.29094 0.00015223 -0.25058 -0.00013112 0.040352 2.1115E-05 523.2585362513596 44.38 0.81779 47.893 47.517 48.335 3.5132 0.048481 2.5538E-05 NaN 15.847 102 59 2 NaN NaN NaN NaN 0 NaN NaN 0 278210 + 32350 19399 20583 20594 -0.017590992453051513 PYLVKVVF 8 Unmodified _PYLVKVVF_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|91|2|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|91|2|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|91|2|anti-sense MSMS UPN47_class_I_Rep_2 3 482.79547119140625 2 482.796946 963.57934 NaN NaN NaN NaN NaN NaN NaN 115.11 1 118.61 118.11 119.11 3.5039 0 0 0 0.40738 1 28056 28056 0.79363 0.10326 1 32351 11433 20584 20595 37198 37198 0.09609324322002522 PYLVSSGQF 9 Unmodified _PYLVSSGQF_ 0 0 0 REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|116|2|anti-sense REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_1 5 499.2532653808594 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 62.031 1 65.499 64.999 65.999 3.4678 0 0 0 0.29868 1 13851 13851 10.824 0 1 + 32352 26752 20585 20596 37199 37199 -0.006739213394098442 PYLVSSGQF 9 Unmodified _PYLVSSGQF_ 0 0 0 REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|116|2|anti-sense REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_1 5 499.2540588378906 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 62.159 1 65.627 65.127 66.127 3.4678 0 0 0 0.37891 1 13890 13890 5.7319 0 1 + 32353 26752 20585 20596 37200 37200 -0.006739213394098442 PYLYLRRQ 8 Unmodified _PYLYLRRQ_ 0 0 0 REV__L1MD2_dup6193|chrX:51882990-51884540:+|1.3499501858307177|0.380605779961664|1.83|150.0|1|1|sense REV__L1MD2_dup6193|chrX:51882990-51884540:+|1.3499501858307177|0.380605779961664|1.83|150.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 554.7564086914062 2 554.816733 1107.61891 NaN NaN NaN NaN NaN NaN NaN 112.21 1 115.84 115.34 116.34 3.6321 0 0 0 0.40738 1 27222 27222 0.79363 0.10326 1 + 32354 27424 20586 20597 37201 37201 0.06940844325413309 PYMRPPLSK 9 Unmodified _PYMRPPLSK_ 0 0 0 nc|ENSG00000156709|O95831-4|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 nc|ENSG00000156709|O95831-4|AIFM1 MULTI-SECPEP UPN47_class_I_Rep_3 4 545.25390625 2 544.799694 1087.58484 0.33376 0.00018183 2.0626 0.0011237 2.3964 0.0013056 545.3018533668048 59.188 0.47314 62.354 61.969 62.442 3.1658 41 27 2 0 0 0 0.11959 1 13731 13731 7.9102 7.9102 1 87273 32355 3740 20587 20598 37202 37202 0.04454679842137921 PYNCYYVA 8 Unmodified _PYNCYYVA_ 0 0 0 REV__ENSG00000164736|ENST00000297316|SOX17 REV__ENSG00000164736|ENST00000297316|SOX17 MSMS UPN47_class_I_Rep_3 4 496.7125244140625 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 32.772 1 36.059 35.559 36.559 3.2867 0 0 0 0.40738 1 5762 5762 0.79363 0 1 + 32356 20079 20588 20599 37203 37203 -0.08509525653983019 PYNNDIDYY 9 Unmodified _PYNNDIDYY_ 0 0 0 nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9;nc|ENSG00000182870|Q9HCQ5-2|GALNT9 nc|ENSG00000182870|Q9HCQ5|GALNT9 nc|ENSG00000182870|Q9HCQ5|GALNT9 MULTI-MSMS UPN47_class_I_Rep_1 2 589.753662109375 2 588.745836 1175.47712 0.41452 0.00024405 0.75077 0.00044201 1.1653 0.00068606 588.7458229380904 79.131 1.0087 82.577 82.155 83.163 3.4456 237 92 3 0 0 0 0.37599 1 19761 19761 9.3831 0.78985 1 1105900 32357 4974 20589 20600 37204 37204 -0.10360038278236061 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|1|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|2|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|3|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|6|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|9|intron;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|4|intron;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 575.7929077148438 2 575.792589 1149.57063 0.4381 0.00025226 0.038574 2.2211E-05 0.47668 0.00027447 575.7925213578928 75.49 0.56206 78.99 78.779 79.341 3.4996 84 51 2 0 0 0 0.23322 1 17886 17886 40.239 0 1 152460 32358 1365 20590 20601 37205 37205 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|1|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|2|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|3|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|6|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|9|intron;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|4|intron;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 575.7931518554688 2 575.792589 1149.57063 0.5231 0.0003012 0.19046 0.00010967 0.71356 0.00041086 575.7925848339135 75.472 0.49928 79.038 78.729 79.228 3.5659 92 52 2 0 0 0 0.21204 1 17729 17729 47.594 0 1 156320 32359 1365 20590 20601 37206 37206 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|1|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|2|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|3|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|6|intron;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|9|intron;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;ENSG00000021762.20,OSBPL5,chr11,-,I11.1,3107946,3119546|24|21.7|4|intron;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 ENST00000548535.1_1_12:76779917-76783618:-|nuORF ENST00000548535.1_1_12:76779917-76783618:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 575.792589 1149.57063 0.47333 0.00027254 0.010561 6.0812E-06 0.48389 0.00027862 575.7925661435327 75.439 0.14056 79.04 78.955 79.096 3.6011 0.017149 -0.00011157 NaN 47.594 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 132790 32360 1365 20590 20601 0.0018230589482755022 PYNPLWAQL 9 Unmodified _PYNPLWAQL_ 0 0 0 nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 MSMS UPN48_class_I_Rep_1 5 551.2903442382812 2 551.290017 1100.56548 NaN NaN NaN NaN NaN NaN NaN 79.303 1 82.838 82.338 83.338 3.5352 0 0 0 0.10315 1 18928 18928 24.021 11.78 1 32361 924 20591 20602 37207 37207 0.019220468228922982 PYNPLWAQL 9 Unmodified _PYNPLWAQL_ 0 0 0 nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 MSMS UPN48_class_I_Rep_2 6 551.2901000976562 2 551.290017 1100.56548 NaN NaN NaN NaN NaN NaN NaN 79.353 1 82.986 82.486 83.486 3.6331 0 0 0 0.31276 1 18848 18848 10.074 3.3508 1 32362 924 20591 20602 37208 37208 0.019220468228922982 PYPCPMKMI 9 Unmodified _PYPCPMKMI_ 0 0 0 HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|270|2|anti-sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|270|2|anti-sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|270|2|anti-sense MSMS UPN48_class_I_Rep_1 5 540.257080078125 2 540.257959 1078.50137 NaN NaN NaN NaN NaN NaN NaN 72.744 1 76.217 75.717 76.717 3.4732 0 0 0 0.39518 1 17094 17094 1.8442 0 1 32363 8087 20592 20603 37209 37209 -0.034745159215617605 PYPFILSVDGY 11 Unmodified _PYPFILSVDGY_ 0 0 0 L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|112|2|anti-sense L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|112|2|anti-sense L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|112|2|anti-sense MSMS UPN46_class_I_Rep_3 1 424.21844482421875 3 424.216657 1269.62814 NaN NaN NaN NaN NaN NaN NaN 88.619 1 88.619 88.119 89.119 0 0 0 0 0.38417 1 21290 21290 0.50596 0 1 32364 9707 20593 20604 37210 37210 0.004111481004429152 PYPFVLLV 8 Unmodified _PYPFVLLV_ 0 0 0 L1MB2_dup6034|chr12:62514690-62515535:+|1.4855108912607808|0.0975174017911342|3.93|151.0|30|1|anti-sense L1MB2_dup6034|chr12:62514690-62515535:+|1.4855108912607808|0.0975174017911342|3.93|151.0|30|1|anti-sense L1MB2_dup6034|chr12:62514690-62515535:+|1.4855108912607808|0.0975174017911342|3.93|151.0|30|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2823791503906 2 474.283672 946.552791 0.25143 0.00011925 -2.5881 -0.0012275 -2.3367 -0.0011083 474.2821485025008 110.43 0.094299 110.43 110.39 110.48 0 25 9 3 0 0 0 0.82752 1 27200 27200 2.8892 0.58649 1 436990 32365 10267 20594 20605 37211 37211 0.07737635430669343 PYPHTFND 8 Unmodified _PYPHTFND_ 0 0 0 REV__L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|19|2|sense REV__L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 495.7861022949219 2 495.719424 989.424296 NaN NaN NaN NaN NaN NaN NaN 118.53 1 118.53 118.03 119.03 0 0 0 0 0.40738 1 29425 29425 0.79363 0 1 + 32366 24599 20595 20606 37212 37212 -0.0708395155039625 PYPLIYFL 8 Unmodified _PYPLIYFL_ 0 0 0 ENSG00000188710|ENST00000623824|QRFP ENSG00000188710|ENST00000623824|QRFP ENSG00000188710|ENST00000623824|QRFP MULTI-MSMS UPN46_class_I_Rep_3 1 513.2860717773438 2 513.288954 1024.56336 0.2808 0.00014413 -4.1272 -0.0021184 -3.8464 -0.0019743 513.2870001928087 72.195 0.13942 72.195 72.128 72.268 0 18 14 2 0 0 0 0.82752 1 16663 16663 17.087 0 1 104820 32367 5247 20596 20607 37213 37213 0.0520561808509683 PYPLIYFL 8 Unmodified _PYPLIYFL_ 0 0 0 ENSG00000188710|ENST00000623824|QRFP ENSG00000188710|ENST00000623824|QRFP ENSG00000188710|ENST00000623824|QRFP MSMS UPN46_class_I_Rep_3 1 513.2869262695312 2 513.288954 1024.56336 NaN NaN NaN NaN NaN NaN NaN 72.28 1 72.28 71.78 72.78 0 0 0 0 0.39167 1 16700 16700 11.114 0 1 32368 5247 20596 20607 37214 37214 0.0520561808509683 PYPPPLFSLL 10 Unmodified _PYPPPLFSLL_ 0 0 0 MLT1K_dup10055|chr10:87940693-87941124:-|2.4886945591984904|0.1404185742922015|4.15|151.0|24|3|anti-sense MLT1K_dup10055|chr10:87940693-87941124:-|2.4886945591984904|0.1404185742922015|4.15|151.0|24|3|anti-sense MLT1K_dup10055|chr10:87940693-87941124:-|2.4886945591984904|0.1404185742922015|4.15|151.0|24|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.3262329101562 2 572.326068 1142.63758 0.44393 0.00025407 -0.066884 -3.828E-05 0.37705 0.00021579 572.3259490491158 72.026 0.39116 75.5 75.377 75.768 3.4732 78 36 3 0 0 0 0.54466 1 16957 16957 6.2058 0.47393 1 294720 32369 16476 20597 20608 37215 37215 0.0719696117660078 PYPPPLFSLL 10 Unmodified _PYPPPLFSLL_ 0 0 0 MLT1K_dup10055|chr10:87940693-87941124:-|2.4886945591984904|0.1404185742922015|4.15|151.0|24|3|anti-sense MLT1K_dup10055|chr10:87940693-87941124:-|2.4886945591984904|0.1404185742922015|4.15|151.0|24|3|anti-sense MLT1K_dup10055|chr10:87940693-87941124:-|2.4886945591984904|0.1404185742922015|4.15|151.0|24|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 572.8278198242188 2 572.326068 1142.63758 0.5238 0.00029979 -0.26822 -0.00015351 0.25558 0.00014627 572.3258151088027 71.709 0.47913 75.236 74.928 75.407 3.5266 90 42 3 0 0 0 0.46161 1 16593 16593 14.838 0.93222 1 348510 32370 16476 20597 20608 37216 37216 0.0719696117660078 PYPQYFTQL 9 Unmodified _PYPQYFTQL_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-SECPEP UPN48_class_I_Rep_2 6 578.3057861328125 2 578.787307 1155.56006 0.47023 0.00027216 2.0849 0.0012067 2.5551 0.0014789 579.2911462750878 70.567 0.56762 74.103 73.889 74.457 3.5359 80 63 2 0 0 0 0.11446 1 16427 16427 14.405 4.222 1 176450 32371 1646 20598 20609 37217 37217 -0.01149676759587237 PYPRALEQQL 10 Unmodified _PYPRALEQQL_ 0 0 0 ENST00000488743.6_1_2:27425876-27434347:-|nuORF ENST00000488743.6_1_2:27425876-27434347:-|nuORF ENST00000488743.6_1_2:27425876-27434347:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 405.2218322753906 3 405.555784 1213.64552 -0.26579 -0.00010779 1.0692 0.00043362 0.80342 0.00032583 405.5562187060296 46.639 0.48796 50.339 50.071 50.559 3.6999 54 32 2 0 0 0 0.84575 1 9969 9969 0.77653 0.50751 1 190440 32372 7050 20599 20610 37218 37218 0.04724488426086282 PYPSPWLK 8 Unmodified _PYPSPWLK_ 0 0 0 MER101-int_dup96|chr2:6870230-6873927:+|1.0627588255845666|0.4684166421877491|1.18|151.0|183|1|anti-sense MER101-int_dup96|chr2:6870230-6873927:+|1.0627588255845666|0.4684166421877491|1.18|151.0|183|1|anti-sense MER101-int_dup96|chr2:6870230-6873927:+|1.0627588255845666|0.4684166421877491|1.18|151.0|183|1|anti-sense MSMS UPN46_class_I_Rep_3 1 494.2994384765625 2 494.268553 986.522553 NaN NaN NaN NaN NaN NaN NaN 61.465 1 61.465 60.965 61.965 0 0 0 0 0.40472 1 13680 13680 4.3292 2.0265 1 32373 15754 20600 20611 37219 37219 0.028752767654737 PYPSTTLYPS 10 Unmodified _PYPSTTLYPS_ 0 0 0 REV__ENSG00000181035.14,SLC25A42,chr19,+,I2.1,19096206,19101780|30|5.33|2|intron REV__ENSG00000181035.14,SLC25A42,chr19,+,I2.1,19096206,19101780|30|5.33|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 563.7769165039062 2 563.276772 1124.53899 0.38844 0.0002188 0.08438 4.7529E-05 0.47282 0.00026633 563.2767428234652 74.997 1.1982 78.391 77.999 79.197 3.3937 265 109 4 0 0 0 0.56078 1 18382 18382 3.2813 0 1 692180 + 32374 20722 20601 20612 37220 37220 -0.01829686859082358 PYPVPEIR 8 Unmodified _PYPVPEIR_ 0 0 0 ENSG00000134815|ENST00000328771|DHX34 ENSG00000134815|ENST00000328771|DHX34 ENSG00000134815|ENST00000328771|DHX34 MSMS UPN48_class_I_Rep_1 5 485.7718811035156 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 20.68 1 24.225 23.725 24.725 3.5454 0 0 0 0.40738 1 1780 1780 0.79363 0 1 32375 2869 20602 20613 37221 37221 0.0423837527713431 PYQGPKGT 8 Unmodified _PYQGPKGT_ 0 0 0 REV__LTR13A_dup185|chr22:45169406-45170372:+|2.0130296882978587|0.3222279426108818|2.64|151.0|37|1|anti-sense REV__LTR13A_dup185|chr22:45169406-45170372:+|2.0130296882978587|0.3222279426108818|2.64|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 424.2184753417969 2 424.21906 846.423567 NaN NaN NaN NaN NaN NaN NaN 88.813 1 88.813 88.313 89.313 0 0 0 0 0.40604 1 21344 21344 2.5775 0 1 + 32376 30843 20603 20614 37222 37222 -0.005787461994373189 PYQKYFPY 8 Unmodified _PYQKYFPY_ 0 0 0 REV__PLCXD2|p.C215Y|1|0.05|ENSG00000240891|chr3:111713906-111713906|G/A|missense_variant REV__PLCXD2|p.C215Y|1|0.05|ENSG00000240891|chr3:111713906-111713906|G/A|missense_variant MULTI-SECPEP UPN48_class_I_Rep_1 5 552.7600708007812 2 553.271293 1104.52803 0.52945 0.00029293 -2.4102 -0.0013335 -1.8808 -0.0010406 553.2701206273113 77.763 0.10387 81.285 81.249 81.353 3.5221 10 9 2 0 0 0 0.72333 1 18518 18518 2.3027 0 1 54092 + 32377 32160 20604 20615 37223 37223 -0.020050444427170078 PYQLPIDIK 9 Unmodified _PYQLPIDIK_ 0 0 0 REV__nc|ENSG00000157833|Q75VX8-2|GAREM2 REV__nc|ENSG00000157833|Q75VX8-2|GAREM2 MSMS UPN47_class_I_Rep_3 4 543.8320922851562 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 66.946 1 70.138 69.638 70.638 3.1914 0 0 0 0.37692 1 16179 16179 6.2058 1.8765 1 + 32378 19829 20605 20616 37224 37224 0.07271486654190085 PYQPRAKH 8 Unmodified _PYQPRAKH_ 0 0 0 REV__nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 REV__nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 MULTI-MSMS UPN46_class_I_Rep_3 1 498.7714538574219 2 498.772326 995.530098 0.30886 0.00015405 -1.4961 -0.00074622 -1.1873 -0.00059217 498.7713036140169 96.819 0.04155 96.819 96.807 96.849 0 6 3 2 0 0 0 0.82752 1 23553 23553 0.79363 0 1 62469 + 32379 21373 20606 20617 37225 37225 0.032154290857420165 PYQPWMCYY 9 Unmodified _PYQPWMCYY_ 0 0 0 L1ME4b_dup4320|chr3:125241439-125241965:-|1.2805466787924276|0.0400231793967899|5.0|151.0|33|2|anti-sense L1ME4b_dup4320|chr3:125241439-125241965:-|1.2805466787924276|0.0400231793967899|5.0|151.0|33|2|anti-sense L1ME4b_dup4320|chr3:125241439-125241965:-|1.2805466787924276|0.0400231793967899|5.0|151.0|33|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 625.753662109375 2 625.754095 1249.49364 0.68419 0.00042813 -0.22625 -0.00014158 0.45794 0.00028656 625.7537237170214 103.97 0.5276 103.97 103.71 104.24 0 83 48 3 0 0 0 0.50088 1 25401 25401 0.52476 0.066424 1 529740 32380 12931 20607 20618 37226 37226 -0.12112951917470127 PYRGLPPI 8 Unmodified _PYRGLPPI_ 0 0 0 REV__L1MB7_dup1471|chr1:212808336-212809385:+|1.380444927753552|0.4434858879041551|1.64|151.0|4|1|sense REV__L1MB7_dup1471|chr1:212808336-212809385:+|1.380444927753552|0.4434858879041551|1.64|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 456.7174072265625 2 456.76872 911.522887 NaN NaN NaN NaN NaN NaN NaN 100.91 1 104.37 103.87 104.87 3.4671 0 0 0 0.40738 1 24905 24905 0.79363 0 1 + 32381 26145 20608 20619 37227 37227 0.06358696485312976 PYSFLFAGVF 10 Unmodified _PYSFLFAGVF_ 0 0 0 L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|149|3|anti-sense L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|149|3|anti-sense L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|149|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.2951049804688 2 574.294768 1146.57498 0.4334 0.0002489 0.20538 0.00011795 0.63878 0.00036685 574.2948920368186 77.417 0.29071 80.939 80.88 81.171 3.5221 55 22 3 0 0 0 0.51003 1 18468 18468 10.824 0.75 1 354020 32382 13286 20609 20620 37228 37228 0.007558151084140263 PYSRPLNG 8 Unmodified _PYSRPLNG_ 0 0 0 REV__L1M1_dup4385|chr8:98225529-98226584:-|1.0028978314967|0.0471037615226251|4.41|150.0|22|3|sense REV__L1M1_dup4385|chr8:98225529-98226584:-|1.0028978314967|0.0471037615226251|4.41|150.0|22|3|sense MSMS UPN48_class_I_Rep_3 7 452.2380676269531 2 452.237784 902.461016 NaN NaN NaN NaN NaN NaN NaN 50.102 1 53.723 53.223 54.223 3.621 0 0 0 0.39996 1 10129 10129 7.9102 0.62092 1 + 32383 24099 20610 20621 37229 37229 0.005883450661826828 PYTDHLTL 8 Unmodified _PYTDHLTL_ 0 0 0 MER58B_dup6725|chr21:34793424-34793699:+|3.022627863243126|0.4084621742968011|2.89|151.0|13|1|anti-sense;chr21:34792610-34793545|64|11.8|0.24|5.64|-|1|TE_info:MER58B,MER58B_dup6725,hAT-Charlie,DNA,donor,+,34793545,34793699|RUNX1,None|1 MER58B_dup6725|chr21:34793424-34793699:+|3.022627863243126|0.4084621742968011|2.89|151.0|13|1|anti-sense MER58B_dup6725|chr21:34793424-34793699:+|3.022627863243126|0.4084621742968011|2.89|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 480.2430419921875 2 480.245275 958.475997 NaN NaN NaN NaN NaN NaN NaN 26.145 1 29.639 29.139 30.139 3.4945 0 0 0 0.40625 1 3738 3738 2.3027 0 1 32384 604 20611 20622 37230 37230 -0.004902078564896328 PYTLYKNKFK 10 Unmodified _PYTLYKNKFK_ 0 0 0 L1PA5_dup5567|chr8:47452336-47453771:+|3.2319316839252856|0.046054143494584|6.13|151.0|41|3|sense L1PA5_dup5567|chr8:47452336-47453771:+|3.2319316839252856|0.046054143494584|6.13|151.0|41|3|sense L1PA5_dup5567|chr8:47452336-47453771:+|3.2319316839252856|0.046054143494584|6.13|151.0|41|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.88250732421875 3 434.579929 1300.71796 0.12979 5.6403E-05 -0.1874 -8.144E-05 -0.057611 -2.5037E-05 434.9141582755661 42.321 0.097607 42.321 42.279 42.377 0 17 11 2 0 0 0 0.84575 1 8377 8377 0.62683 0 1 98234 32385 14496 20612 20623 37231 37231 0.07962822499621325 PYTVVIHYAGN 11 Unmodified _PYTVVIHYAGN_ 0 0 0 nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENSG00000164307|ENST00000443439|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF nc|ENSG00000164307|Q9NZ08-2|ERAP1 nc|ENSG00000164307|Q9NZ08-2|ERAP1 MSMS UPN48_class_I_Rep_1 5 617.3187866210938 2 617.316763 1232.61897 NaN NaN NaN NaN NaN NaN NaN 37.136 1 40.643 40.143 41.143 3.507 0 0 0 0.38417 1 6281 6281 2.7352 0.89096 1 32386 4103 20613 20624 37232 37232 0.011967995347504257 PYVCAFYY 8 Unmodified _PYVCAFYY_ 0 0 0 REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|75|2|anti-sense REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|75|2|anti-sense MSMS UPN47_class_I_Rep_2 3 513.224365234375 2 513.225497 1024.43644 NaN NaN NaN NaN NaN NaN NaN 70.35 1 73.633 73.133 74.133 3.2828 0 0 0 0.40738 1 17136 17136 0.79363 0 1 + 32387 27726 20614 20625 37233 37233 -0.07480051131562959 PYVGGLEEF 9 Unmodified _PYVGGLEEF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS UPN48_class_I_Rep_1 5 505.74468994140625 2 505.745108 1009.47566 0.29625 0.00014983 -0.28532 -0.0001443 0.010935 5.5301E-06 505.7449436986966 66.324 0.32114 69.776 69.575 69.896 3.4516 23 21 2 0 0 0 0.32219 1 15168 15168 12.532 2.3482 1 63895 32388 2624 20615 20626 37234 37234 -0.02869627576330913 PYVIKYAF 8 Unmodified _PYVIKYAF_ 0 0 0 MER34A_dup491|chr5:50412536-50412777:+|7.225978010316632|0.3466601572020794|4.38|151.0|9|3|sense MER34A_dup491|chr5:50412536-50412777:+|7.225978010316632|0.3466601572020794|4.38|151.0|9|3|sense MER34A_dup491|chr5:50412536-50412777:+|7.225978010316632|0.3466601572020794|4.38|151.0|9|3|sense MSMS UPN47_class_I_Rep_3 4 500.31414794921875 2 500.778754 999.542954 NaN NaN NaN NaN NaN NaN NaN 64.854 1 68.034 67.534 68.534 3.1795 0 0 0 0.40604 1 15538 15538 2.5775 0 1 32389 15923 20616 20627 37235 37235 0.04316447425264869 PYVLPVVAV 9 Unmodified _PYVLPVVAV_ 0 0 0 REV__L1ME2_dup616|chr1:120432473-120432901:+|1.641615579150728|0.4441841616755536|1.89|151.0|13|2|sense REV__L1ME2_dup616|chr1:120432473-120432901:+|1.641615579150728|0.4441841616755536|1.89|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 478.7922058105469 2 478.794404 955.574254 NaN NaN NaN NaN NaN NaN NaN 44.902 1 48.257 47.757 48.757 3.3556 0 0 0 0.22893 1 9410 9410 14.582 0 1 + 32390 27868 20617 20628 37236 37236 0.09469020459368949 PYVLPVVAV 9 Unmodified _PYVLPVVAV_ 0 0 0 REV__L1ME2_dup616|chr1:120432473-120432901:+|1.641615579150728|0.4441841616755536|1.89|151.0|13|2|sense REV__L1ME2_dup616|chr1:120432473-120432901:+|1.641615579150728|0.4441841616755536|1.89|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 478.79217529296875 2 478.794404 955.574254 NaN NaN NaN NaN NaN NaN NaN 44.823 1 48.067 47.567 48.567 3.2441 0 0 0 0.3264 1 9436 9436 9.3474 0 1 + 32391 27868 20617 20628 37237 37237 0.09469020459368949 PYVLPVVAV 9 Unmodified _PYVLPVVAV_ 0 0 0 REV__L1ME2_dup616|chr1:120432473-120432901:+|1.641615579150728|0.4441841616755536|1.89|151.0|13|2|sense REV__L1ME2_dup616|chr1:120432473-120432901:+|1.641615579150728|0.4441841616755536|1.89|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 478.7926940917969 2 478.794404 955.574254 NaN NaN NaN NaN NaN NaN NaN 44.984 1 48.228 47.728 48.728 3.2441 0 0 0 0.3264 1 9486 9486 9.3474 0 1 + 32392 27868 20617 20628 37238 37238 0.09469020459368949 PYVPKASHTQ 10 Unmodified _PYVPKASHTQ_ 0 0 0 REV__L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|13|1|sense REV__L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 564.2954711914062 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 34.87 1 38.385 37.885 38.885 3.5144 0 0 0 0.53105 1 5633 5633 1.1933 0.50296 1 + 32393 25401 20618 20629 37239 37239 0.018882438462242135 PYVSKSSR 8 Unmodified _PYVSKSSR_ 0 0 0 MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 461.8114013671875 2 462.250892 922.48723 -0.073583 -3.4014E-05 0.37166 0.0001718 0.29808 0.00013779 462.25083626037264 49.384 0.85694 53.043 52.78 53.637 3.6592 117 56 3 0 0 0 0.72333 1 10708 10708 7.9102 0 1 354740 32394 16143 20619 20630 37240 37240 0.02288614237670572 PYVSKSSR 8 Unmodified _PYVSKSSR_ 0 0 0 MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 462.250892 922.48723 -0.042539 -1.9664E-05 0.4784 0.00022114 0.43586 0.00020148 462.25080041630025 49.868 0.68707 53.211 52.834 53.521 3.3431 0.033953 3.8113E-05 NaN 7.9102 67 40 2 NaN NaN NaN NaN 0 NaN NaN 0 160080 32395 16143 20619 20630 0.02288614237670572 PYVSKSSR 8 Unmodified _PYVSKSSR_ 0 0 0 MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MER5A_dup16654|chr8:42034204-42034389:-|1.6506820049228246|0.0393885740830362|5.39|151.0|4|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 462.250892 922.48723 -0.070863 -3.2756E-05 0.48196 0.00022279 0.4111 0.00019003 462.2509542230145 50.051 0.85685 53.277 52.853 53.71 3.2262 0.10016 4.1406E-05 NaN 7.9102 72 47 2 NaN NaN NaN NaN 0 NaN NaN 0 97476 32396 16143 20619 20630 0.02288614237670572 PYWSIILGY 9 Unmodified _PYWSIILGY_ 0 0 0 ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4 ENSG00000108576|ENST00000650711|SLC6A4 ENSG00000108576|ENST00000650711|SLC6A4 MSMS UPN46_class_I_Rep_3 1 556.2969970703125 2 556.294768 1110.57498 NaN NaN NaN NaN NaN NaN NaN 104.86 1 104.86 104.36 105.36 0 0 0 0 0.39326 1 25586 25586 2.3027 0 1 32397 1869 20620 20631 37241 37241 0.024118151084394412 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_1 5 572.3263549804688 2 572.326068 1142.63758 0.44444 0.00025436 -0.070965 -4.0615E-05 0.37347 0.00021375 572.3260021933303 71.858 0.30519 75.324 75.075 75.38 3.466 62 28 3 0 0 0 0.12096 3 16828 16787;16790;16828 29.841 7.039 1 316860 32398 4132 20621 20632 37242;37243;37244 37244 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_1 5 572.326171875 2 572.326068 1142.63758 0.44393 0.00025407 -0.066884 -3.828E-05 0.37705 0.00021579 572.3259490491158 72.026 0.39116 75.5 75.377 75.768 3.4732 78 36 3 0 0 0 0.079935 2 16866 16866;16900 38.615 12.347 1 294720 32399 4132 20621 20632 37245;37246 37245 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_1 5 572.326904296875 2 572.326068 1142.63758 0.44317 0.00025364 0.75891 0.00043434 1.2021 0.00068798 572.3263787976853 72.354 0.097595 75.827 75.758 75.856 3.4732 11 8 2 0 0 0 0.43982 1 16975 16975 5.7319 0 1 65386 32400 4132 20621 20632 37247 37247 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_2 6 572.3258666992188 2 572.326068 1142.63758 0.47507 0.0002719 0.0087453 5.0052E-06 0.48382 0.0002769 572.3260159826849 71.679 0.56134 75.229 74.984 75.545 3.5505 106 57 3 0 0 0 0.079935 5 16761 16688;16708;16725;16761;16798 38.615 12.347 1 304610 32401 4132 20621 20632 37248;37249;37250;37251;37252 37251 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_2 6 572.3262939453125 2 572.326068 1142.63758 0.47525 0.000272 -0.1527 -8.7397E-05 0.32255 0.0001846 572.3263075859344 72.036 0.15993 75.587 75.545 75.705 3.5505 31 18 2 0 0 0 0.17897 1 16832 16832 22.736 0 1 97375 32402 4132 20621 20632 37253 37253 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_3 7 572.325927734375 2 572.326068 1142.63758 0.5238 0.00029979 -0.26822 -0.00015351 0.25558 0.00014627 572.3258151088027 71.709 0.47913 75.236 74.928 75.407 3.5266 90 42 3 0 0 0 0.026395 3 16711 16632;16672;16711 59.368 26.583 1 348510 32403 4132 20621 20632 37254;37255;37256 37256 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS UPN48_class_I_Rep_3 7 572.3270874023438 2 572.326068 1142.63758 0.52295 0.0002993 0.01653 9.4604E-06 0.53948 0.00030876 572.3260156742793 71.931 0.34306 75.458 75.4 75.743 3.5266 74 36 3 0 0 0 0.11355 3 16748 16748;16759;16784 31.268 5.0002 1 182440 32404 4132 20621 20632 37257;37258;37259 37257 0.07196961176623518 PYYWAWLI 8 Unmodified _PYYWAWLI_ 0 0 0 REV__L1M4_dup8360|chr7:155761128-155761973:-|1.0341877785724607|0.1442128555755306|2.84|151.0|13|2|sense REV__L1M4_dup8360|chr7:155761128-155761973:-|1.0341877785724607|0.1442128555755306|2.84|151.0|13|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 556.7850341796875 2 556.284203 1110.55385 0.48689 0.00027085 -0.091205 -5.0736E-05 0.39569 0.00022011 556.7846427240883 60.386 0.32321 63.651 63.458 63.782 3.2654 34 21 3 0 0 0 0.72333 1 14103 14103 6.3541 1.5981 1 108450 + 32405 24455 20622 20633 37260 37260 0.002998497995577054 PYYYPQKK 8 Unmodified _PYYYPQKK_ 0 0 0 REV__ENSG00000051382.9,PIK3CB,chr3,-,I14.1,138694908,138698906|29|7.99|4|intron REV__ENSG00000051382.9,PIK3CB,chr3,-,I14.1,138694908,138698906|29|7.99|4|intron MSMS UPN47_class_I_Rep_3 4 543.78271484375 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 48.859 1 52.094 51.594 52.594 3.2345 0 0 0 0.40604 1 10660 10660 2.5775 0.27475 1 + 32406 17681 20623 20634 37261 37261 0.01522644448596111 QAACDERLAE 10 Unmodified _QAACDERLAE_ 0 0 0 REV__ENSG00000107816|ENST00000454422|LZTS2 REV__ENSG00000107816|ENST00000454422|LZTS2 MSMS UPN47_class_I_Rep_1 2 553.2515258789062 2 553.250763 1104.48697 NaN NaN NaN NaN NaN NaN NaN 58.976 1 62.393 61.893 62.893 3.4171 0 0 0 0.53105 1 13659 13659 1.3295 0 1 + 32407 18360 20624 20635 37262 37262 -0.06109173544518853 QAALLAQDY 9 Unmodified _QAALLAQDY_ 0 0 0 ENST00000578264.1_1_17:80019305-80022125:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L ENST00000578264.1_1_17:80019305-80022125:-|nuORF ENST00000578264.1_1_17:80019305-80022125:-|nuORF MSMS UPN48_class_I_Rep_3 7 496.75604248046875 2 496.756007 991.497461 NaN NaN NaN NaN NaN NaN NaN 36.346 1 40.012 39.512 40.512 3.6667 0 0 0 0.38639 1 6006 6006 3.9444 1.3669 1 32408 4434 20625 20636 37263 37263 0.0013717717222334613 QAEILKLKNS 10 Unmodified _QAEILKLKNS_ 0 0 0 L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|60|3|sense L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|60|3|sense L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|60|3|sense MSMS UPN48_class_I_Rep_2 6 572.3396606445312 2 572.340238 1142.66592 NaN NaN NaN NaN NaN NaN NaN 35.237 1 38.911 38.411 39.411 3.6735 0 0 0 0.53105 1 5782 5782 8.1555 1.4324 1 32409 9611 20626 20637 37264 37264 0.10029659085898857 QAEKIKELA 9 Unmodified _QAEKIKELA_ 0 0 0 REV__nc|ENSG00000173166|Q70E73-5|RAPH1 REV__nc|ENSG00000173166|Q70E73-5|RAPH1 MULTI-MSMS UPN47_class_I_Rep_2 3 515.300537109375 2 515.300581 1028.58661 0.10303 5.309E-05 0.3622 0.00018664 0.46523 0.00023973 515.8023794755916 61.82 0.30835 65.079 64.918 65.226 3.2594 29 21 2 0 0 0 0.42249 1 14546 14546 6.7232 0 1 110990 + 32410 20475 20627 20638 37265 37265 0.07346012131779389 QAEQALQEL 9 Unmodified _QAEQALQEL_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-SECPEP UPN47_class_I_Rep_3 4 515.3106079101562 2 515.264196 1028.51384 0.28956 0.0001492 -0.39818 -0.00020517 -0.10862 -5.5967E-05 515.2636429739767 54.483 0.23123 57.669 57.523 57.755 3.1856 15 13 2 0 0 0 0.11446 1 12383 12383 14.405 0 1 43634 32411 16841 20628 20639 37266 37266 0.0007225833833217621 QAFDIGTLR 9 Unmodified _QAFDIGTLR_ 0 0 0 ENSG00000113100|ENST00000231021|CDH9;ENST00000505020.1_1_5:26881247-26890759:-|nuORF;ENSG00000113361|ENST00000265071|CDH6;ENST00000503958.1_1_5:24487774-24493064:-|nuORF;ENSG00000040731|ENST00000264463|CDH10 ENSG00000113100|ENST00000231021|CDH9;ENSG00000113361|ENST00000265071|CDH6;ENST00000503958.1_1_5:24487774-24493064:-|nuORF ENSG00000113361|ENST00000265071|CDH6 MSMS UPN48_class_I_Rep_1 5 510.7591247558594 2 510.777274 1019.53999 NaN NaN NaN NaN NaN NaN NaN 57.131 1 60.625 60.125 61.125 3.4942 0 0 0 0.31276 1 12353 12353 10.074 0.6908 1 32412 2030;2041;866 20629 20640 37267 37267 0.031005723004795982 QAFQPVNDNV 10 Unmodified _QAFQPVNDNV_ 0 0 0 REV__ENSG00000177839|ENST00000316105|PCDHB9 REV__ENSG00000177839|ENST00000316105|PCDHB9 MSMS UPN47_class_I_Rep_2 3 566.2744140625 2 566.275095 1130.53564 NaN NaN NaN NaN NaN NaN NaN 37.437 1 40.836 40.336 41.336 3.3988 0 0 0 0.53105 1 7139 7139 1.3295 0.13619 1 + 32413 20631 20630 20641 37268 37268 -0.02440936913103542 QAFSWLVCHN 10 Unmodified _QAFSWLVCHN_ 0 0 0 ENST00000330688.8_1_3:25469962-25470082:+|nuORF ENST00000330688.8_1_3:25469962-25470082:+|nuORF ENST00000330688.8_1_3:25469962-25470082:+|nuORF MSMS UPN47_class_I_Rep_2 3 602.7811279296875 2 602.782033 1203.54951 NaN NaN NaN NaN NaN NaN NaN 33.131 1 36.586 36.086 37.086 3.4547 0 0 0 0.53105 1 5830 5830 1.3295 0.13619 1 32414 6182 20631 20642 37269 37269 -0.044119826856558575 QAFVSSLIY 9 Unmodified _QAFVSSLIY_ 0 0 0 ENSG00000011028|ENST00000303375|MRC2 ENSG00000011028|ENST00000303375|MRC2 ENSG00000011028|ENST00000303375|MRC2 MSMS UPN48_class_I_Rep_2 6 514.2763061523438 2 514.276575 1026.5386 NaN NaN NaN NaN NaN NaN NaN 73.142 1 76.707 76.207 77.207 3.5645 0 0 0 0.37692 1 17163 17163 6.2058 0.97511 1 32415 766 20632 20643 37270 37270 0.02638938211725872 QAGMRWCDR 9 Unmodified _QAGMRWCDR_ 0 0 0 nc|ENSG00000196352|P08174-2|CD55 nc|ENSG00000196352|P08174-2|CD55 nc|ENSG00000196352|P08174-2|CD55 MULTI-SECPEP UPN46_class_I_Rep_3 1 562.3345336914062 2 561.75021 1121.48587 0.18161 0.00010202 1.2884 0.00072378 1.4701 0.0008258 561.7518514022419 30.026 0.062428 30.026 29.985 30.048 0 6 4 2 0 0 0 0.12477 1 4838 4838 1.6526 0.17072 1 28896 32416 16791 20633 20644 37271 37271 -0.07001666394398853 QAGVQRLK 8 Unmodified _QAGVQRLK_ 0 0 0 AluJo_dup67113|chr17:75805513-75805810:+|1.2991756070536462|0.1689660389426104|2.94|151.0|18|2|anti-sense AluJo_dup67113|chr17:75805513-75805810:+|1.2991756070536462|0.1689660389426104|2.94|151.0|18|2|anti-sense AluJo_dup67113|chr17:75805513-75805810:+|1.2991756070536462|0.1689660389426104|2.94|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 450.2735900878906 2 450.274701 898.534849 0.14316 6.446E-05 -0.23749 -0.00010694 -0.094332 -4.2475E-05 450.27460660176445 72.607 0.46718 76.172 75.928 76.396 3.5645 52 39 2 0 0 0 0.82752 1 16970 16970 2.3027 0 1 91934 32417 124 20634 20645 37272 37272 0.08152313228515595 QAHVQVHDMV 10 Unmodified _QAHVQVHDMV_ 0 0 0 L1PA16_dup13882|chr22:49869816-49870864:-|2.4071660331808054|0.0956278614710472|4.65|151.0|32|1|anti-sense L1PA16_dup13882|chr22:49869816-49870864:-|2.4071660331808054|0.0956278614710472|4.65|151.0|32|1|anti-sense L1PA16_dup13882|chr22:49869816-49870864:-|2.4071660331808054|0.0956278614710472|4.65|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_2 6 582.2764892578125 2 582.28494 1162.55533 NaN NaN NaN NaN NaN NaN NaN 50.755 1 54.423 53.923 54.923 3.6679 0 0 0 0.53105 1 10393 10393 1.3295 0.36726 1 32418 14056 20635 20646 37273 37273 -0.01944884174008621 QAIDFPFLV 9 Unmodified _QAIDFPFLV_ 0 0 0 ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG MSMS UPN48_class_I_Rep_2 6 525.2880249023438 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 55.586 1 59.142 58.642 59.642 3.5559 0 0 0 0.39518 1 11861 11861 1.8442 1.0506 1 32419 4152 20636 20647 37274 37274 0.03699528591369017 QAILKLWPQA 10 Unmodified _QAILKLWPQA_ 0 0 0 AluSz6_dup13662|chr5:76852429-76852739:+|1.5463497062128853|0.0049708901470857|8.28|149.0|19|2|anti-sense AluSz6_dup13662|chr5:76852429-76852739:+|1.5463497062128853|0.0049708901470857|8.28|149.0|19|2|anti-sense AluSz6_dup13662|chr5:76852429-76852739:+|1.5463497062128853|0.0049708901470857|8.28|149.0|19|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.34765625 2 584.347866 1166.68118 0.19991 0.00011682 0.40611 0.00023731 0.60602 0.00035413 584.3479576835342 26.952 0.33661 26.952 26.94 27.277 0 54 27 3 0 0 0 0.56333 1 4001 4001 1.4819 0.8804 1 622340 32420 378 20637 20648 37275 37275 0.10450570673765469 QAKEETQSY 9 Unmodified _QAKEETQSY_ 0 0 0 REV__ENSG00000124233|ENST00000372781|SEMG1 REV__ENSG00000124233|ENST00000372781|SEMG1 MULTI-MSMS UPN46_class_I_Rep_3 1 542.2512817382812 2 542.251286 1082.48802 -0.2161 -0.00011718 0.13509 7.3255E-05 -0.08101 -4.3928E-05 542.2512774704483 15.165 0.65807 15.165 15.029 15.687 0 143 76 3 0 0 0 0.46434 1 854 854 4.3292 0.38484 1 170510 + 32421 18801 20638 20649 37276 37276 -0.04992635903931841 QAKEKRTQLRR 11 Unmodified _QAKEKRTQLRR_ 0 0 0 REV__nc|ENSG00000148773|P46013-2|MKI67 REV__nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS UPN48_class_I_Rep_1 5 471.9518127441406 3 471.951419 1412.83243 0.084842 4.0041E-05 1.3508 0.00063751 1.4356 0.00067755 471.9519364939352 98.799 0.079376 102.41 102.36 102.44 3.6065 15 11 2 0 0 0 0.67113 1 23851 23851 1.3296 0.11481 1 440050 + 32422 17422 20639 20650 37277 37277 0.14252525034294194 QAKEKRTQLRR 11 Unmodified _QAKEKRTQLRR_ 0 0 0 REV__nc|ENSG00000148773|P46013-2|MKI67 REV__nc|ENSG00000148773|P46013-2|MKI67 MULTI-MATCH UPN46_class_I_Rep_3 1 3 471.951419 1412.83243 0.24486 0.00011556 2.5216 0.0011901 2.7665 0.0013056 472.28731836843303 102.52 0.02179 102.52 102.5 102.53 0 -0.013285 0.0019453 NaN 1.3296 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 26993 + 32423 17422 20639 20650 0.14252525034294194 QAKLKQAR 8 Unmodified _QAKLKQAR_ 0 0 0 ENST00000521802.5_1_8:42112879-42123213:-|nuORF ENST00000521802.5_1_8:42112879-42123213:-|nuORF ENST00000521802.5_1_8:42112879-42123213:-|nuORF MSMS UPN48_class_I_Rep_1 5 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 58.649 1 62.136 61.636 62.636 3.487 0 0 0 0.40625 1 12816 12816 2.3027 0 1 32424 7239 20640 20651 37278 37278 0.1039228863688777 QAKNQFAIL 9 Unmodified _QAKNQFAIL_ 0 0 0 REV__L1MEc_dup11983|chr10:73221303-73222834:-|1.7344696301227982|0.2335308349574029|2.89|151.0|8|1|sense REV__L1MEc_dup11983|chr10:73221303-73222834:-|1.7344696301227982|0.2335308349574029|2.89|151.0|8|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 516.7957153320312 2 516.795466 1031.57638 0.30331 0.00015675 0.1718 8.8788E-05 0.47512 0.00024554 516.7956159669699 59.816 0.93625 63.214 62.861 63.798 3.3982 132 65 3 0 0 0 0.091029 1 13908 13908 21.747 1.3321 1 362260 + 32425 28364 20641 20652 37279 37279 0.06185449197187154 QAKQVVALN 9 Unmodified _QAKQVVALN_ 0 0 0 ENST00000514541.1_1_4:15661507-15683068:-|nuORF ENST00000514541.1_1_4:15661507-15683068:-|nuORF ENST00000514541.1_1_4:15661507-15683068:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.2869567871094 2 485.787641 969.56073 -0.12862 -6.2484E-05 -1.0675 -0.00051857 -1.1961 -0.00058105 485.787543439886 45.655 1.0328 49.355 48.853 49.886 3.6999 154 59 4 0 0 0 0.42249 1 9516 9516 6.7232 0.99131 1 581390 32426 7198 20642 20653 37280 37280 0.07473162680139467 QAKQVVALN 9 Unmodified _QAKQVVALN_ 0 0 0 ENST00000514541.1_1_4:15661507-15683068:-|nuORF ENST00000514541.1_1_4:15661507-15683068:-|nuORF ENST00000514541.1_1_4:15661507-15683068:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 485.78759765625 2 485.787641 969.56073 -0.012146 -5.9005E-06 -1.1262 -0.00054711 -1.1384 -0.00055301 485.78751023054286 46.118 1.3655 49.362 48.963 50.328 3.2441 178 84 3 0 0 0 0.13631 1 9889 9889 26.884 1.4843 1 398310 32427 7198 20642 20653 37281 37281 0.07473162680139467 QALAISNREF 10 Unmodified _QALAISNREF_ 0 0 0 REV__HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|32|3|sense REV__HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 574.8068237304688 2 574.806562 1147.59857 NaN NaN NaN NaN NaN NaN NaN 30.319 1 34.064 33.564 34.564 3.7449 0 0 0 0.53105 1 4941 4941 1.3295 0.13619 1 + 32428 23421 20643 20654 37282 37282 0.030676288749418745 QALEKILQL 9 Unmodified _QALEKILQL_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000525207.1_1_11:65824747-65825957:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS UPN48_class_I_Rep_1 5 528.3267211914062 2 528.326599 1054.63865 NaN NaN NaN NaN NaN NaN NaN 64.075 1 67.533 67.033 68.033 3.4578 0 0 0 0.32573 1 14476 14476 9.3831 2.0939 1 32429 1300 20644 20655 37283 37283 0.11351175545541992 QALELPLRI 9 Unmodified _QALELPLRI_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN48_class_I_Rep_1 5 526.8265991210938 2 526.826766 1051.63898 0.34948 0.00018411 -0.76493 -0.00040298 -0.41545 -0.00021887 526.8263229018239 69.434 0.44226 72.889 72.767 73.209 3.4548 36 31 2 0 0 0 0.33908 1 16115 16115 11.495 5.2889 1 134720 32430 2735 20645 20656 37284 37284 0.11522595265364544 QALELPLRI 9 Unmodified _QALELPLRI_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.826766 1051.63898 0.51734 0.00027255 -0.81002 -0.00042674 -0.29268 -0.00015419 526.826301965993 69.125 0.24832 72.634 72.456 72.705 3.5094 -0.12767 -3.5988E-05 NaN 11.495 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 85935 32431 2735 20645 20656 0.11522595265364544 QALKQIKA 8 Unmodified _QALKQIKA_ 0 0 0 ENSG00000132837|ENST00000255189|DMGDH ENSG00000132837|ENST00000255189|DMGDH ENSG00000132837|ENST00000255189|DMGDH MSMS UPN47_class_I_Rep_1 2 450.2866516113281 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 35.948 1 39.624 39.124 40.124 3.6762 0 0 0 0.40625 1 6652 6652 2.3027 0 1 32432 2778 20646 20657 37285 37285 0.10666368031081674 QALLLLYQV 9 Unmodified _QALLLLYQV_ 0 0 0 Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|65|3|anti-sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|65|3|anti-sense Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 530.821533203125 2 530.823692 1059.63283 NaN NaN NaN NaN NaN NaN NaN 74.525 1 77.838 77.338 78.338 3.3127 0 0 0 0.39518 1 18368 18368 1.8442 0.19162 1 32433 33010 20647 20658 37286 37286 0.10540077033851958 QALLTAKHL 9 Unmodified _QALLTAKHL_ 0 0 0 REV__HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|73|3|sense REV__HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|73|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 497.30303955078125 2 497.805834 993.597115 0.27335 0.00013607 -3.0154 -0.0015011 -2.742 -0.001365 497.804541262983 63.364 0.048103 66.873 66.839 66.887 3.5091 6 4 2 0 0 0 0.12444 1 14162 14162 2.0598 0 1 33832 + 32434 23800 20648 20659 37287 37287 0.10006039576853709 QALLTVRRH 9 Unmodified _QALLTVRRH_ 0 0 0 REV__ENST00000493315.1_1_2:63631156-63711794:-|nuORF REV__ENST00000493315.1_1_2:63631156-63711794:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 117.4 1 120.84 120.34 121.34 3.4425 0 0 0 0.4007 1 28923 28923 0.52476 0 1 + 32435 19468 20649 20660 37288 37288 0.10899051448268438 QALLVVFGG 9 Unmodified _QALLVVFGG_ 0 0 0 REV__LTR12C_dup2418|chr16:67998033-67999459:+|3.393990123806926|0.3446502708260341|3.3|151.0|58|3|anti-sense REV__LTR12C_dup2418|chr16:67998033-67999459:+|3.393990123806926|0.3446502708260341|3.3|151.0|58|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.26922607421875 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 45.395 1 45.395 44.895 45.895 0 0 0 0 0.39326 1 9227 9227 2.3027 0 1 + 32436 30814 20650 20661 37289 37289 0.06739276765483737 QALNQTTKNF 10 Unmodified _QALNQTTKNF_ 0 0 0 REV__ENSG00000168899|ENST00000306384|VAMP5 REV__ENSG00000168899|ENST00000306384|VAMP5 MSMS UPN47_class_I_Rep_1 2 582.8064575195312 2 582.80402 1163.59349 NaN NaN NaN NaN NaN NaN NaN 69.055 1 72.423 71.923 72.923 3.3678 0 0 0 0.53105 1 16710 16710 4.5289 0.19963 1 + 32437 20287 20651 20662 37290 37290 0.018233250123103062 QALQILVY 8 Unmodified _QALQILVY_ 0 0 0 ENST00000493283.5_1_5:71616260-71618028:+|nuORF;ENST00000510676.6_2_5:71616224-71630887:+|nuORF;nc|ENSG00000049883|Q8WV60-3|PTCD2;ENSG00000049883|ENST00000380639|PTCD2 ENST00000493283.5_1_5:71616260-71618028:+|nuORF ENST00000493283.5_1_5:71616260-71618028:+|nuORF MSMS UPN46_class_I_Rep_3 1 474.2822265625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 43.155 1 43.155 42.655 43.655 0 0 0 0 0.40604 1 8592 8592 2.5775 0 1 32438 907 20652 20663 37291 37291 0.07335545936962262 QALRAYRPY 9 Unmodified _QALRAYRPY_ 0 0 0 REV__L1MC_dup2748|chr6:13676265-13677417:+|1.0310933332994925|0.0136563412336178|6.24|150.0|17|2|sense REV__L1MC_dup2748|chr6:13676265-13677417:+|1.0310933332994925|0.0136563412336178|6.24|150.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.3112182617188 2 569.311815 1136.60908 0.046097 2.6243E-05 -0.59198 -0.00033702 -0.54588 -0.00031078 569.3114146754417 32.431 0.68819 35.886 35.626 36.314 3.4547 110 49 3 0 0 0 0.48643 1 5554 5554 2.0598 0.21551 1 184290 + 32439 26462 20653 20664 37292 37292 0.046236563200409364 QALVDVSLY 9 Unmodified _QALVDVSLY_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9 nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MULTI-MSMS UPN46_class_I_Rep_3 1 504.8089904785156 2 504.274032 1006.53351 0.28287 0.00014264 -1.1222 -0.00056588 -0.83929 -0.00042323 504.7755288347628 45.41 0.072189 45.41 45.363 45.435 0 6 4 2 0 0 0 0.40174 1 9232 9232 7.9102 1.5561 1 38856 32440 3214 20654 20665 37293 37293 0.03050634349096981 QALWIRPV 8 Unmodified _QALWIRPV_ 0 0 0 AluJb_dup31259|chr4:88022801-88023087:+|1.66924794137711|0.0596495837601227|4.81|151.0|1|1|sense AluJb_dup31259|chr4:88022801-88023087:+|1.66924794137711|0.0596495837601227|4.81|151.0|1|1|sense AluJb_dup31259|chr4:88022801-88023087:+|1.66924794137711|0.0596495837601227|4.81|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 491.79595947265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.987 1 68.441 67.941 68.941 3.4541 0 0 0 0.40625 1 14752 14752 2.3027 0 1 32441 42 20655 20666 37294 37294 0.08446074267999393 QANDYTHKY 9 Unmodified _QANDYTHKY_ 0 0 0 REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|25|2|anti-sense REV__MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|25|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.2606811523438 2 570.259445 1138.50434 NaN NaN NaN NaN NaN NaN NaN 21.619 1 21.619 21.119 22.119 0 0 0 0 0.38073 1 2444 2444 5.2969 0.76802 1 + 32442 31312 20656 20667 37295 37295 -0.059375099471935755 QANVNQKTTE 10 Unmodified _QANVNQKTTE_ 0 0 0 L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|67|3|sense L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|67|3|sense L1PA15_dup6275|chr11:102413417-102415927:+|4.69943048032961|0.1698503070268078|4.79|151.0|67|3|sense MSMS UPN46_class_I_Rep_3 1 566.7847900390625 2 566.783284 1131.55202 NaN NaN NaN NaN NaN NaN NaN 19.724 1 19.724 19.224 20.224 0 0 0 0 0.53105 1 1929 1929 1.4819 0.15237 1 32443 13961 20657 20668 37296 37296 -0.008498557470147716 QAPKARAAG 9 Unmodified _QAPKARAAG_ 0 0 0 ENST00000313519.9_2_10:14920918-14938948:+|nuORF ENST00000313519.9_2_10:14920918-14938948:+|nuORF ENST00000313519.9_2_10:14920918-14938948:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.2511291503906 2 435.251226 868.487899 0.16643 7.2438E-05 -0.23364 -0.00010169 -0.067216 -2.9256E-05 435.2510198284562 83.21 0.79605 86.917 86.498 87.294 3.7066 264 105 3 0 0 0 0.42249 1 19682 19682 6.7232 1.9672 1 895300 32444 6117 20658 20669 37297 37297 0.048394536773685104 QAPKPRKQ 8 Unmodified _QAPKPRKQ_ 0 0 0 ENSG00000161634|ENST00000293371|DCD;nc|ENSG00000161634|P81605-2|DCD ENSG00000161634|ENST00000293371|DCD ENSG00000161634|ENST00000293371|DCD MSMS UPN46_class_I_Rep_3 1 476.7877502441406 2 476.787976 951.561398 NaN NaN NaN NaN NaN NaN NaN 12.148 1 12.148 11.648 12.648 0 0 0 0 0.40625 1 37 37 2.3027 0.82083 1 32445 3903 20659 20670 37298 37298 0.08368002119846096 QAPMGISWTAD 11 Unmodified _QAPMGISWTAD_ 0 0 0 L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|364|3|anti-sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|364|3|anti-sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|364|3|anti-sense MSMS UPN47_class_I_Rep_3 4 588.768798828125 2 588.771331 1175.52811 NaN NaN NaN NaN NaN NaN NaN 39.156 1 42.394 41.894 42.894 3.238 0 0 0 0.38417 1 7704 7704 2.9952 0.49676 1 32446 14822 20660 20671 37299 37299 -0.05263412505019005 QAPMHERAGP 10 Unmodified _QAPMHERAGP_ 0 0 0 REV__ENST00000376259.6_1_1:12227075-12248914:+|nuORF REV__ENST00000376259.6_1_1:12227075-12248914:+|nuORF MSMS UPN48_class_I_Rep_3 7 547.262939453125 2 547.264007 1092.51346 NaN NaN NaN NaN NaN NaN NaN 24.833 1 28.602 28.102 29.102 3.769 0 0 0 0.53105 1 2934 2934 1.3295 0.5359 1 + 32447 22016 20661 20672 37300 37300 -0.02909439862492036 QAQLFSEF 8 Unmodified _QAQLFSEF_ 0 0 0 REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF REV__ENST00000456101.6_1_6:109773431-109775944:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.2369079589844 2 485.23745 968.460347 NaN NaN NaN NaN NaN NaN NaN 39.446 1 42.824 42.324 43.324 3.3785 0 0 0 0.40604 1 7748 7748 2.5775 0 1 + 32448 19146 20662 20673 37301 37301 -0.025144943735199377 QAQPLPPPWL 10 Unmodified _QAQPLPPPWL_ 0 0 0 ENST00000334801.7_1_11:118767651-118767771:-|nuORF ENST00000334801.7_1_11:118767651-118767771:-|nuORF ENST00000334801.7_1_11:118767651-118767771:-|nuORF MSMS UPN47_class_I_Rep_2 3 573.7725219726562 2 573.818941 1145.62333 NaN NaN NaN NaN NaN NaN NaN 65.506 1 68.761 68.261 69.261 3.2556 0 0 0 0.53105 1 15677 15677 1.6526 0.96225 1 32449 6198 20663 20674 37302 37302 0.0563430874833557 QAQWQPIQL 9 Unmodified _QAQWQPIQL_ 0 0 0 REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|239|3|anti-sense REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|239|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2973022460938 2 556.298373 1110.58219 0.47235 0.00026277 0.029839 1.6599E-05 0.50218 0.00027936 556.2980148306252 60.986 0.25354 64.251 64.152 64.406 3.2654 32 24 2 0 0 0 0.42249 1 14347 14347 6.7232 0 1 102940 + 32450 29433 20664 20675 37303 37303 0.03132547708855782 QARAYVLEL 9 Unmodified _QARAYVLEL_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MULTI-MSMS UPN48_class_I_Rep_3 7 531.8011474609375 2 531.800749 1061.58694 0.52684 0.00028018 0.025191 1.3396E-05 0.55203 0.00029357 531.8007719302842 63.239 0.58456 66.748 66.558 67.142 3.5091 74 47 2 0 0 0 0.1249 2 14127 14127;14191 29.082 2.8134 1 160780 + 32451 17588 20665 20676 37304;37305 37304 0.058614318515992636 QARERNKVY 9 Unmodified _QARERNKVY_ 0 0 0 L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|46|1|sense;L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|94|2|sense;L1PA6_dup391|chr1:197573397-197576092:+|1.423818353085879|0.0336577535353406|5.4|151.0|33|2|sense;L1PA8_dup1944|chr4:67524247-67526350:+|1.804594434662148|0.0437644391608082|5.37|151.0|46|3|sense;L1PA7_dup12558|chr19:44250029-44253909:+|2.87789397826424|0.2106735164796936|3.77|151.0|102|3|sense;L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|12|1|sense;L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|38|1|sense;L1PA3_dup1389|chr2:187506910-187509816:-|1.480124824649612|0.3385004987982422|2.13|149.0|12|1|sense;L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|157|3|sense L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|46|1|sense L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|46|1|sense MSMS UPN47_class_I_Rep_1 2 582.3202514648438 2 582.317628 1162.6207 NaN NaN NaN NaN NaN NaN NaN 62.033 1 65.402 64.902 65.902 3.3681 0 0 0 0.37476 1 14586 14586 6.7232 1.9672 1 32452 14229 20666 20677 37306 37306 0.04589853343372852 QARFYSVLQ 9 Unmodified _QARFYSVLQ_ 0 0 0 REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 556.2979125976562 2 556.298373 1110.58219 0.64652 0.00035966 -0.098426 -5.4754E-05 0.5481 0.0003049 556.2980809462075 60.944 0.48283 64.417 64.215 64.698 3.4737 68 41 2 0 0 0 0.279 2 13545 13545;13581 15.248 6.5031 1 176050 + 32453 21256 20667 20678 37307;37308 37307 0.03132547708855782 QARFYSVLQ 9 Unmodified _QARFYSVLQ_ 0 0 0 REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 556.299072265625 2 556.298373 1110.58219 0.56156 0.0003124 -0.22939 -0.00012761 0.33217 0.00018479 556.2981123562413 60.883 0.4956 64.361 64.122 64.618 3.4785 57 46 2 0 0 0 0.20317 1 13491 13491 20.415 5.5763 1 161640 + 32454 21256 20667 20678 37309 37309 0.03132547708855782 QARFYSVLQ 9 Unmodified _QARFYSVLQ_ 0 0 0 REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF MSMS UPN48_class_I_Rep_3 7 556.298583984375 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 60.816 1 64.329 63.829 64.829 3.5128 0 0 0 0.13613 1 13389 13389 20.415 4.2654 1 + 32455 21256 20667 20678 37310 37310 0.03132547708855782 QARFYSVLQ 9 Unmodified _QARFYSVLQ_ 0 0 0 REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 556.298373 1110.58219 0.42519 0.00023653 0.069842 3.8853E-05 0.49503 0.00027539 556.2981474248024 60.785 0.29491 64.167 63.986 64.281 3.3815 -0.1325 0.0001797 NaN 20.415 31 27 2 NaN NaN NaN NaN 0 NaN NaN 0 110490 + 32456 21256 20667 20678 0.03132547708855782 QARFYSVLQ 9 Unmodified _QARFYSVLQ_ 0 0 0 REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF REV__ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 556.298373 1110.58219 0.47235 0.00026277 0.029839 1.6599E-05 0.50218 0.00027936 556.2980148306252 60.986 0.25354 64.251 64.152 64.406 3.2654 -0.047775 0.0001352 NaN 20.415 32 24 2 NaN NaN NaN NaN 0 NaN NaN 0 102940 + 32457 21256 20667 20678 0.03132547708855782 QARPWMVY 8 Unmodified _QARPWMVY_ 0 0 0 ENST00000306107.9_3_3:105085858-105238971:+|nuORF ENST00000306107.9_3_3:105085858-105238971:+|nuORF ENST00000306107.9_3_3:105085858-105238971:+|nuORF MSMS UPN46_class_I_Rep_3 1 525.7633666992188 2 525.763112 1049.51167 NaN NaN NaN NaN NaN NaN NaN 31.476 1 31.476 30.976 31.976 0 0 0 0 0.39624 1 5264 5264 9.3474 2.0582 1 32458 6092 20668 20679 37311 37311 -0.011104488804676294 QARSFWLL 8 Unmodified _QARSFWLL_ 0 0 0 REV__L1MC5a_dup13100|chr13:113471405-113472286:+|1.0035489381766134|0.118153099952447|3.09|151.0|26|1|anti-sense REV__L1MC5a_dup13100|chr13:113471405-113472286:+|1.0035489381766134|0.118153099952447|3.09|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 510.78533935546875 2 510.784902 1019.55525 NaN NaN NaN NaN NaN NaN NaN 39.78 1 43.521 43.021 44.021 3.7413 0 0 0 0.40738 1 7094 7094 0.79363 0 1 + 32459 27117 20669 20680 37312 37312 0.046254838883328375 QARYARLI 8 Unmodified _QARYARLI_ 0 0 0 REV__ENSG00000105251|ENST00000543264|SHD REV__ENSG00000105251|ENST00000543264|SHD MSMS UPN47_class_I_Rep_1 2 495.7959899902344 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 68.967 1 72.335 71.835 72.835 3.3678 0 0 0 0.40746 1 16683 16683 0.69038 0 1 + 32460 18283 20670 20681 37313 37313 0.08184288636891779 QASAPSFWFHT 11 Unmodified _QASAPSFWFHT_ 0 0 0 REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|67|1|anti-sense REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|67|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 640.299560546875 2 639.798737 1277.58292 0.40765 0.00026081 -1.0019 -0.00064099 -0.59421 -0.00038017 639.7981471477691 54.754 0.58278 58.256 57.97 58.553 3.5014 73 35 3 0 0 0 0.67264 1 12448 12448 1.1933 0.23107 1 116160 + 32461 32595 20671 20682 37314 37314 -0.04476657642112514 QASAPSFWFHT 11 Unmodified _QASAPSFWFHT_ 0 0 0 REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|67|1|anti-sense REV__Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|67|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 639.7985229492188 2 639.798737 1277.58292 0.44241 0.00028305 -1.0836 -0.00069329 -0.64119 -0.00041024 639.7980530657529 55.198 0.62827 58.376 58.019 58.647 3.1779 63 37 2 0 0 0 0.59712 2 12501 12501;12664 5.2969 2.3016 1 78447 + 32462 32595 20671 20682 37315;37316 37315 -0.04476657642112514 QASPITNKV 9 Unmodified _QASPITNKV_ 0 0 0 REV__Charlie1a_dup221|chr1:89682476-89683362:+|1.2608226123660349|0.0437269196880224|4.85|150.0|43|1|anti-sense REV__Charlie1a_dup221|chr1:89682476-89683362:+|1.2608226123660349|0.0437269196880224|4.85|150.0|43|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.27130126953125 2 479.271824 956.529095 -0.043088 -2.0651E-05 -2.8384 -0.0013604 -2.8815 -0.001381 479.27102359436134 45.628 0.18315 48.982 48.848 49.031 3.3535 15 9 3 0 0 0 0.49187 1 9637 9637 1.4819 0 1 40948 + 32463 17308 20672 20683 37317 37317 0.049091699261907706 QASVLLHTL 9 Unmodified _QASVLLHTL_ 0 0 0 REV__nc|ENSG00000138613|Q8WW43-2|APH1B REV__nc|ENSG00000138613|Q8WW43-2|APH1B MULTI-MSMS UPN48_class_I_Rep_1 5 491.79583740234375 2 491.290017 980.565481 0.18619 9.1473E-05 0.52479 0.00025783 0.71098 0.0003493 491.28913265228385 53.518 1.0287 57.037 56.544 57.573 3.5192 144 73 3 0 0 0 0.46869 1 11223 11223 3.9444 0.3479 1 680260 + 32464 19280 20673 20684 37318 37318 0.07442046822893644 QASVLLHTL 9 Unmodified _QASVLLHTL_ 0 0 0 REV__nc|ENSG00000138613|Q8WW43-2|APH1B REV__nc|ENSG00000138613|Q8WW43-2|APH1B MULTI-MSMS UPN48_class_I_Rep_3 7 491.28924560546875 2 491.290017 980.565481 0.096751 4.7533E-05 -0.0042753 -2.1004E-06 0.092476 4.5433E-05 491.28912499442134 53.518 0.69637 57.101 56.767 57.464 3.5836 105 54 3 0 0 0 0.46869 1 11119 11119 3.9444 0.3479 1 627310 + 32465 19280 20673 20684 37319 37319 0.07442046822893644 QATKDSTAKY 10 Unmodified _QATKDSTAKY_ 0 0 0 REV__L1MD2_dup1421|chr2:200917545-200917836:+|1.397612854702026|0.2258436155362721|2.63|151.0|4|2|sense REV__L1MD2_dup1421|chr2:200917545-200917836:+|1.397612854702026|0.2258436155362721|2.63|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 556.7850952148438 2 556.782753 1111.55095 NaN NaN NaN NaN NaN NaN NaN 60.617 1 63.783 63.283 64.283 3.1651 0 0 0 0.53105 1 14247 14247 9.3831 0.78985 1 + 32466 27392 20674 20685 37320 37320 -0.00036070115902475663 QATQEVAQQN 10 Unmodified _QATQEVAQQN_ 0 0 0 LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|46|2|anti-sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|46|2|anti-sense LTR102_Mam_dup149|chr6:24990661-24991472:+|2.1462139090114043|0.0242634330421008|6.47|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_2 6 558.7691650390625 2 558.767634 1115.52072 NaN NaN NaN NaN NaN NaN NaN 25.975 1 29.609 29.109 30.109 3.6332 0 0 0 0.53105 1 3242 3242 1.3295 0 1 32467 15506 20675 20686 37321 37321 -0.03242428781072704 QAVMLAYLL 9 Unmodified _QAVMLAYLL_ 0 0 0 MER1B_dup3702|chr11:73689178-73689516:-|1.2260433548288847|0.0483882571607226|4.66|151.0|20|2|anti-sense MER1B_dup3702|chr11:73689178-73689516:-|1.2260433548288847|0.0483882571607226|4.66|151.0|20|2|anti-sense MER1B_dup3702|chr11:73689178-73689516:-|1.2260433548288847|0.0483882571607226|4.66|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 511.29205322265625 2 511.291171 1020.56779 NaN NaN NaN NaN NaN NaN NaN 37.102 1 40.349 39.849 40.849 3.247 0 0 0 0.39428 1 7075 7075 2.0598 0.21551 1 32468 15813 20676 20687 37322 37322 0.05832759236352558 QAVSHCEQRF 10 Unmodified _QAVSHCEQRF_ 0 0 0 REV__AluSz6_dup36286|chr15:32447735-32448037:-|1.1918532753262188|0.2128681418181188|2.49|146.0|17|2|anti-sense REV__AluSz6_dup36286|chr15:32447735-32448037:-|1.1918532753262188|0.2128681418181188|2.49|146.0|17|2|anti-sense MSMS UPN47_class_I_Rep_3 4 602.782470703125 2 602.780022 1203.54549 NaN NaN NaN NaN NaN NaN NaN 33.273 1 36.548 36.048 37.048 3.2748 0 0 0 0.53105 1 5910 5910 1.1933 0.23107 1 + 32469 17231 20677 20688 37323 37323 -0.04814072179374307 QAVTEYALY 9 Unmodified _QAVTEYALY_ 0 0 0 REV__ENSG00000196284|ENST00000371459|SUPT3H REV__ENSG00000196284|ENST00000371459|SUPT3H MULTI-MSMS UPN48_class_I_Rep_1 5 529.2642211914062 2 529.263665 1056.51278 0.35666 0.00018877 0.021336 1.1292E-05 0.378 0.00020006 529.2635982197528 71.782 0.77438 75.248 74.932 75.707 3.466 169 71 3 0 0 0 0.11683 1 16748 16748 30.637 1.555 1 495570 + 32470 21025 20678 20689 37324 37324 -0.013219560305742561 QAVTEYALY 9 Unmodified _QAVTEYALY_ 0 0 0 REV__ENSG00000196284|ENST00000371459|SUPT3H REV__ENSG00000196284|ENST00000371459|SUPT3H MULTI-MSMS UPN48_class_I_Rep_3 7 529.2637329101562 2 529.263665 1056.51278 0.53858 0.00028505 -0.13636 -7.2171E-05 0.40222 0.00021288 529.263457113524 71.592 0.8805 75.118 74.823 75.703 3.5266 192 84 3 0 0 0 0.11683 1 16562 16562 30.637 1.555 1 651460 + 32471 21025 20678 20689 37325 37325 -0.013219560305742561 QAWNRPFFTAL 11 Unmodified _QAWNRPFFTAL_ 0 0 0 MLT1C_dup13819|chr12:104612161-104612610:-|2.5553596331085275|0.0098540799400096|8.02|151.0|10|2|sense MLT1C_dup13819|chr12:104612161-104612610:-|2.5553596331085275|0.0098540799400096|8.02|151.0|10|2|sense MLT1C_dup13819|chr12:104612161-104612610:-|2.5553596331085275|0.0098540799400096|8.02|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 450.9029541015625 3 450.903295 1349.68806 NaN NaN NaN NaN NaN NaN NaN 23.037 1 26.481 25.981 26.981 3.4447 0 0 0 0.38417 1 2835 2835 0.50596 0 1 32472 16294 20679 20690 37326 37326 0.027198835543231326 QAWPGCTTH 9 Unmodified _QAWPGCTTH_ 0 0 0 REV__THE1B-int_dup3720|chr14:65086260-65087826:+|5.565886219196388|0.3436537429097359|4.02|151.0|74|2|anti-sense REV__THE1B-int_dup3720|chr14:65086260-65087826:+|5.565886219196388|0.3436537429097359|4.02|151.0|74|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7192077636719 2 500.718901 999.42325 NaN NaN NaN NaN NaN NaN NaN 19.893 1 23.505 23.005 24.005 3.6118 0 0 0 0.39518 1 1907 1907 1.8442 0.19162 1 + 32473 32267 20680 20691 37327 37327 -0.07648489190944474 QAWRQAPAIP 10 Unmodified _QAWRQAPAIP_ 0 0 0 AluSx1_dup3183|chr1:44584687-44584998:-|1.0259167765159622|0.0030685803025473|8.39|148.0|2|1|sense AluSx1_dup3183|chr1:44584687-44584998:-|1.0259167765159622|0.0030685803025473|8.39|148.0|2|1|sense AluSx1_dup3183|chr1:44584687-44584998:-|1.0259167765159622|0.0030685803025473|8.39|148.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.8134155273438 2 569.311815 1136.60908 0.046097 2.6243E-05 -0.59198 -0.00033702 -0.54588 -0.00031078 569.3114146754417 32.431 0.68819 35.886 35.626 36.314 3.4547 110 49 3 0 0 0 0.56333 1 5730 5730 1.4819 0.28856 1 184290 32474 316 20681 20692 37328 37328 0.04623656320018199 QAWWQVRR 8 Unmodified _QAWWQVRR_ 0 0 0 ENST00000465084.1_1_2:113977751-113993018:-|nuORF ENST00000465084.1_1_2:113977751-113993018:-|nuORF ENST00000465084.1_1_2:113977751-113993018:-|nuORF MSMS UPN48_class_I_Rep_3 7 565.3063354492188 2 565.304324 1128.5941 NaN NaN NaN NaN NaN NaN NaN 34.775 1 38.447 37.947 38.947 3.6721 0 0 0 0.40746 1 5559 5559 0.69038 0.16561 1 32475 6888 20682 20693 37329 37329 0.03494209242694524 QAYLALYL 8 Unmodified _QAYLALYL_ 0 0 0 REV__nc|ENSG00000107518|Q5VV63-2|ATRNL1 REV__nc|ENSG00000107518|Q5VV63-2|ATRNL1 MSMS UPN48_class_I_Rep_2 6 477.76873779296875 2 477.768386 953.522219 NaN NaN NaN NaN NaN NaN NaN 48.273 1 52.009 51.509 52.509 3.7361 0 0 0 0.39819 1 9627 9627 8.5933 0.68312 1 + 32476 18353 20683 20694 37330 37330 0.04359857045608351 QAYMDLLAFE 10 Unmodified _QAYMDLLAFE_ 0 0 0 ENST00000485592.5_1_7:150939800-150942574:-|nuORF;ENST00000577686.1_1_17:61914140-61914581:-|nuORF;ENST00000472103.5_1_7:150939488-150940771:-|nuORF;ENST00000547247.5_1_12:50479152-50482438:+|nuORF;nc|ENSG00000082014|Q6STE5-2|SMARCD3;nc|ENSG00000066117|Q96GM5-2|SMARCD1;nc|ENSG00000108604|Q92925-3|SMARCD2;ENSG00000082014|ENST00000262188|SMARCD3;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000066117|ENST00000394963|SMARCD1;ENSG00000108604|ENST00000448276|SMARCD2 ENST00000485592.5_1_7:150939800-150942574:-|nuORF ENST00000485592.5_1_7:150939800-150942574:-|nuORF MSMS UPN48_class_I_Rep_2 6 600.81689453125 2 600.783907 1199.55326 NaN NaN NaN NaN NaN NaN NaN 59.151 1 62.65 62.15 63.15 3.4987 0 0 0 0.53105 1 12949 12949 5.7319 2.4505 1 32477 1016 20684 20695 37331 37331 -0.03853357702473659 QAYPVFFS 8 Unmodified _QAYPVFFS_ 0 0 0 L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|74|2|anti-sense L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|74|2|anti-sense L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|74|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.73712158203125 2 479.737086 957.459619 0.31476 0.000151 -0.10361 -4.9707E-05 0.21115 0.0001013 479.73688929774835 59.273 0.5153 62.76 62.593 63.108 3.4868 59 34 2 0 0 0 0.82752 1 13059 13059 15.847 4.2069 1 126130 32478 11615 20685 20696 37332 37332 -0.020812890225670344 QAYYAAQQY 9 Unmodified _QAYYAAQQY_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS UPN47_class_I_Rep_2 3 553.2504272460938 2 553.251089 1104.48762 NaN NaN NaN NaN NaN NaN NaN 58.397 1 61.679 61.179 62.179 3.2818 0 0 0 0.38478 1 13516 13516 4.3292 1.334 1 + 32479 20275 20686 20697 37333 37333 -0.06044010833147695 QAYYAAQQY 9 Unmodified _QAYYAAQQY_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MULTI-MSMS UPN47_class_I_Rep_3 4 553.2510375976562 2 553.251089 1104.48762 0.33739 0.00018666 -0.16703 -9.2412E-05 0.17036 9.425E-05 553.2509246281633 58.681 0.22446 61.847 61.756 61.98 3.1658 31 12 4 0 0 0 0.46434 1 13649 13649 4.3292 0 1 317590 + 32480 20275 20686 20697 37334 37334 -0.06044010833147695 QAYYAAQQYY 10 Unmodified _QAYYAAQQYY_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS UPN48_class_I_Rep_1 5 634.78466796875 2 634.782753 1267.55095 NaN NaN NaN NaN NaN NaN NaN 44.545 1 48.058 47.558 48.558 3.5132 0 0 0 0.53105 1 8491 8491 9.3831 0.63772 1 + 32481 20275 20687 20698 37335 37335 -0.07212070115906499 QAYYAAQQYY 10 Unmodified _QAYYAAQQYY_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS UPN48_class_I_Rep_1 5 634.7841796875 2 634.782753 1267.55095 NaN NaN NaN NaN NaN NaN NaN 44.671 1 48.184 47.684 48.684 3.5132 0 0 0 0.53105 1 8531 8531 6.2058 0 1 + 32482 20275 20687 20698 37336 37336 -0.07212070115906499 QAYYAAQQYY 10 Unmodified _QAYYAAQQYY_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS UPN48_class_I_Rep_2 6 634.7847290039062 2 634.782753 1267.55095 NaN NaN NaN NaN NaN NaN NaN 44.314 1 48.076 47.576 48.576 3.7617 0 0 0 0.53105 1 8432 8432 6.2058 0 1 + 32483 20275 20687 20698 37337 37337 -0.07212070115906499 QCAKIVSR 8 Unmodified _QCAKIVSR_ 0 0 0 REV__nc|ENSG00000001626|P13569-3|CFTR REV__nc|ENSG00000001626|P13569-3|CFTR MULTI-MSMS UPN46_class_I_Rep_3 1 452.75701904296875 2 452.755287 903.496021 -0.091612 -4.1478E-05 2.6092 0.0011813 2.5176 0.0011399 452.75706447450045 28.937 0.28742 28.937 28.803 29.09 0 27 23 2 0 0 0 0.82752 1 4508 4508 3.5965 0 1 75899 + 32484 17512 20688 20699 37338 37338 0.04041264602494721 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 509.6734619140625 2 509.673302 1017.33205 0.35216 0.00017948 -0.22603 -0.0001152 0.12613 6.4283E-05 509.6732327612275 96.573 0.1331 100.35 100.24 100.38 3.7767 28 18 2 0 0 0 0.82752 1 23925 23925 7.9102 2.6795 1 274260 32485 9198 20689 20700 37339 37339 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 509.673095703125 2 509.673302 1017.33205 0.31783 0.00016199 -0.90923 -0.00046341 -0.5914 -0.00030142 509.67316268053196 96.25 0.19282 100.03 99.902 100.09 3.7804 36 26 3 0 0 0 0.82752 1 22848 22848 7.9102 2.6795 1 185100 32486 9198 20689 20700 37340 37340 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 509.673302 1017.33205 0.31826 0.00016221 -0.12194 -6.2151E-05 0.19632 0.00010006 509.67327670706504 100.34 0.040749 100.34 100.31 100.35 0 0.084734 0.00016199 NaN 7.9102 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 67694 32487 9198 20689 20700 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 509.673302 1017.33205 0.35216 0.00017948 -0.22603 -0.0001152 0.12613 6.4283E-05 509.6732327612275 96.573 0.1331 100.35 100.24 100.38 3.7767 0.093135 5.5887E-05 NaN 7.9102 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 274260 32488 9198 20689 20700 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 509.673302 1017.33205 0.32394 0.00016511 -0.27998 -0.0001427 0.043961 2.2406E-05 509.67331793232506 96.625 0.087219 100.04 99.998 100.09 3.414 0.0042077 0.00029868 NaN 7.9102 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 72740 32489 9198 20689 20700 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.673302 1017.33205 0.32366 0.00016496 -0.4102 -0.00020907 -0.086537 -4.4105E-05 509.67324212624624 96.764 0.19495 100.18 100.07 100.27 3.414 -0.078313 -0.00013185 NaN 7.9102 36 23 2 NaN NaN NaN NaN 0 NaN NaN 0 869040 32490 9198 20689 20700 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 509.673302 1017.33205 0.22424 0.00011429 -0.19259 -9.8159E-05 0.031647 1.6129E-05 509.6732196661894 96.626 0.45415 100.24 99.985 100.44 3.6124 -0.017666 8.997E-05 NaN 7.9102 70 51 2 NaN NaN NaN NaN 0 NaN NaN 0 407810 32491 9198 20689 20700 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 509.673302 1017.33205 0.31783 0.00016199 -0.90923 -0.00046341 -0.5914 -0.00030142 509.67316268053196 96.25 0.19282 100.03 99.902 100.09 3.7804 -0.0042077 -0.00034274 NaN 7.9102 36 26 3 NaN NaN NaN NaN 0 NaN NaN 0 185100 32492 9198 20689 20700 -0.17592120950587287 QCCDNWSY 8 Unmodified _QCCDNWSY_ 0 0 0 L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense L1M5_dup51308|chr19:41317003-41317360:+|2.309975999578074|0.1363916045299282|4.08|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 509.673302 1017.33205 0.31744 0.00016179 -0.48979 -0.00024963 -0.17235 -8.7841E-05 510.1743951151439 96.394 0.28595 100.17 100.11 100.39 3.7804 -0.081891 -0.00021297 NaN 7.9102 51 36 2 NaN NaN NaN NaN 0 NaN NaN 0 252460 32493 9198 20689 20700 -0.17592120950587287 QCCLQCFH 8 Unmodified _QCCLQCFH_ 0 0 0 REV__L1MC5_dup4265|chr5:32152812-32153392:+|2.1291545990915446|0.0471190752988433|5.5|151.0|37|3|anti-sense REV__L1MC5_dup4265|chr5:32152812-32153392:+|2.1291545990915446|0.0471190752988433|5.5|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_2 3 490.7826232910156 2 491.190608 980.366663 NaN NaN NaN NaN NaN NaN NaN 111.03 1 114.56 114.06 115.06 3.5271 0 0 0 0.40604 1 27030 27030 2.5775 0 1 + 32494 27079 20690 20701 37341 37341 -0.1243057634347906 QCEEMDKWM 9 Unmodified _QCEEMDKWM_ 0 0 0 REV__ENSG00000123219.13,CENPK,chr5,-,I8.1,65541437,65542801|74|7.38|1|intron REV__ENSG00000123219.13,CENPK,chr5,-,I8.1,65541437,65542801|74|7.38|1|intron MSMS UPN48_class_I_Rep_3 7 600.2297973632812 2 600.230127 1198.4457 NaN NaN NaN NaN NaN NaN NaN 118.67 1 122.26 121.76 122.76 3.5847 0 0 0 0.40038 1 28219 28219 0.6015 0.14316 1 + 32495 18776 20691 20702 37342 37342 -0.14558393899847033 QCFCAIPFPNV 11 Unmodified _QCFCAIPFPNV_ 0 0 0 REV__L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|328|3|anti-sense REV__L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|328|3|anti-sense MSMS UPN47_class_I_Rep_2 3 619.7879028320312 2 619.788469 1237.56239 NaN NaN NaN NaN NaN NaN NaN 67.034 1 70.298 69.798 70.798 3.2636 0 0 0 0.38417 1 16143 16143 1.1933 0 1 + 32496 29674 20692 20703 37343 37343 -0.046892876177707876 QCFDLICF 8 Unmodified _QCFDLICF_ 0 0 0 REV__L1PA16_dup4847|chr5:131746269-131747225:-|1.0646415424322255|0.0715253200252459|3.9|151.0|43|1|anti-sense REV__L1PA16_dup4847|chr5:131746269-131747225:-|1.0646415424322255|0.0715253200252459|3.9|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.7193908691406 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 25.384 1 28.867 28.367 29.367 3.483 0 0 0 0.40581 1 3515 3515 2.8892 2.0956 1 + 32497 29385 20693 20704 37344 37344 -0.07480295009008842 QCFRLPMM 8 Unmodified _QCFRLPMM_ 0 0 0 REV__L1ME1_dup2969|chr2:32372201-32372561:-|2.0208105008464186|0.0041100998748876|8.94|151.0|31|3|anti-sense REV__L1ME1_dup2969|chr2:32372201-32372561:-|2.0208105008464186|0.0041100998748876|8.94|151.0|31|3|anti-sense MSMS UPN46_class_I_Rep_3 1 513.2401733398438 2 513.240101 1024.46565 NaN NaN NaN NaN NaN NaN NaN 99.329 1 99.329 98.829 99.829 0 0 0 0 0.40738 1 24195 24195 0.79363 0 1 + 32498 27750 20694 20705 37345 37345 -0.045605533785533225 QCFWHCFGC 9 Unmodified _QCFWHCFGC_ 0 0 0 REV__L1PA7_dup4895|chr5:177661089-177664032:+|2.420336929456497|0.1200775470443225|4.33|151.0|150|2|anti-sense REV__L1PA7_dup4895|chr5:177661089-177664032:+|2.420336929456497|0.1200775470443225|4.33|151.0|150|2|anti-sense MSMS UPN46_class_I_Rep_3 1 565.7022094726562 2 565.703882 1129.39321 NaN NaN NaN NaN NaN NaN NaN 114.42 1 114.42 113.92 114.92 0 0 0 0 0.39428 1 28278 28278 2.0598 0.21551 1 + 32499 30112 20695 20706 37346 37346 -0.16630887452129173 QCHRLFQFN 9 Unmodified _QCHRLFQFN_ 0 0 0 REV__ENST00000002165.10_1_6:143825152-143825272:-|nuORF REV__ENST00000002165.10_1_6:143825152-143825272:-|nuORF MSMS UPN47_class_I_Rep_3 4 596.785888671875 2 596.78765 1191.56075 NaN NaN NaN NaN NaN NaN NaN 47.487 1 50.728 50.228 51.228 3.2405 0 0 0 0.37476 1 10253 10253 6.7232 0.51738 1 + 32500 21457 20696 20707 37347 37347 -0.027371605915050168 QCIRVLAFE 9 Unmodified _QCIRVLAFE_ 0 0 0 REV__ENSG00000139117.14,CPNE8,chr12,-,I19.1,38685695,38693656|33|10.32|2|intron REV__ENSG00000139117.14,CPNE8,chr12,-,I19.1,38685695,38693656|33|10.32|2|intron MULTI-SECPEP UPN47_class_I_Rep_2 3 539.2662353515625 2 539.789327 1077.5641 0.47079 0.00025413 1.2587 0.00067945 1.7295 0.00093358 539.7898295900005 54.957 0.22785 58.267 58.089 58.317 3.3102 14 11 2 0 0 0 0.12034 1 12440 12440 7.2892 0 1 52321 + 32501 19302 20697 20708 37348 37348 0.028420894624787252 QCKRSVEQI 9 Unmodified _QCKRSVEQI_ 0 0 0 REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|85|3|anti-sense REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.7997436523438 2 545.787315 1089.56008 NaN NaN NaN NaN NaN NaN NaN 42.025 1 45.704 45.204 46.204 3.6792 0 0 0 0.38916 1 8500 8500 3.2813 0 1 + 32502 32263 20698 20709 37349 37349 0.018879999687896998 QCKRSVQQIAK 11 Unmodified _QCKRSVQQIAK_ 0 0 0 REV__THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|60|1|anti-sense REV__THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_3 4 430.2561950683594 3 430.243323 1287.70814 NaN NaN NaN NaN NaN NaN NaN 109.69 1 113.23 112.73 113.73 3.5347 0 0 0 0.38417 1 26955 26955 1.2148 0 1 + 32503 32288 20699 20710 37350 37350 0.07579311222616525 QCLCYLFYF 9 Unmodified _QCLCYLFYF_ 0 0 0 REV__L1MEf_dup4902|chr7:37237842-37239170:-|2.5010148271050467|0.0387803188486166|6.01|151.0|88|2|anti-sense REV__L1MEf_dup4902|chr7:37237842-37239170:-|2.5010148271050467|0.0387803188486166|6.01|151.0|88|2|anti-sense MSMS UPN48_class_I_Rep_2 6 600.2678833007812 2 600.266838 1198.51912 NaN NaN NaN NaN NaN NaN NaN 63.119 1 66.593 66.093 67.093 3.4738 0 0 0 0.38478 1 14165 14165 4.3292 0.73274 1 + 32504 28647 20700 20711 37351 37351 -0.07219477395074136 QCNKSGKAF 9 Unmodified _QCNKSGKAF_ 0 0 0 nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611 nc|ENSG00000213020|Q8N823-2|ZNF611 nc|ENSG00000213020|Q8N823-2|ZNF611 MULTI-MSMS UPN48_class_I_Rep_1 5 491.74224853515625 2 491.742376 981.4702 0.18102 8.9017E-05 -0.13198 -6.4898E-05 0.049047 2.4119E-05 491.74226823553875 40.924 1.184 44.43 43.77 44.954 3.506 181 108 2 0 0 0 0.28552 1 7493 7493 14.838 0.25658 1 213630 32505 5579 20701 20712 37352 37352 -0.021276296397900296 QCNKSGKAF 9 Unmodified _QCNKSGKAF_ 0 0 0 nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611 nc|ENSG00000213020|Q8N823-2|ZNF611 nc|ENSG00000213020|Q8N823-2|ZNF611 MSMS UPN48_class_I_Rep_3 7 491.74237060546875 2 491.742376 981.4702 NaN NaN NaN NaN NaN NaN NaN 40.096 1 43.747 43.247 44.247 3.6509 0 0 0 0.32573 1 7090 7090 9.3831 0.035688 1 32506 5579 20701 20712 37353 37353 -0.021276296397900296 QCNRIIEKN 9 Unmodified _QCNRIIEKN_ 0 0 0 REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|36|2|sense REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|36|2|sense MSMS UPN48_class_I_Rep_3 7 559.2943115234375 2 559.292765 1116.57098 NaN NaN NaN NaN NaN NaN NaN 43.906 1 47.545 47.045 48.045 3.6385 0 0 0 0.38784 1 8228 8228 3.5965 0 1 + 32507 26958 20702 20713 37354 37354 0.017354023430698362 QCRRLPRPAT 10 Unmodified _QCRRLPRPAT_ 0 0 0 REV__ENST00000264852.8_2_3:113251777-113285301:+|nuORF REV__ENST00000264852.8_2_3:113251777-113285301:+|nuORF MSMS UPN48_class_I_Rep_2 6 599.3367309570312 2 599.335298 1196.65604 NaN NaN NaN NaN NaN NaN NaN 65.519 1 68.998 68.498 69.498 3.4792 0 0 0 0.53105 1 14898 14898 1.3295 0.13619 1 + 32508 21584 20703 20714 37355 37355 0.06558192599550239 QCVAHAQKSS 10 Unmodified _QCVAHAQKSS_ 0 0 0 REV__nc|ENSG00000127914|Q99996-4|AKAP9 REV__nc|ENSG00000127914|Q99996-4|AKAP9 MSMS UPN48_class_I_Rep_3 7 529.7564086914062 2 529.756015 1057.49748 NaN NaN NaN NaN NaN NaN NaN 27.418 1 31.174 30.674 31.674 3.7555 0 0 0 0.53105 1 3596 3596 1.3295 0.13619 1 + 32509 18887 20704 20715 37356 37356 -0.02897146099417114 QCWAMLLR 8 Unmodified _QCWAMLLR_ 0 0 0 REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 510.7592468261719 2 510.759515 1019.50448 0.23076 0.00011786 -1.1735 -0.00059938 -0.94274 -0.00048151 510.7588348579617 50.077 0.59282 53.601 53.143 53.736 3.5246 49 37 2 0 0 0 0.82752 1 10176 10176 4.756 2.4533 1 110020 + 32510 23203 20705 20716 37357 37357 -0.00449504752532448 QCWMSWPEW 9 Unmodified _QCWMSWPEW_ 0 0 0 REV__MER77_dup585|chr8:94772336-94772883:-|1.4249344530151613|0.2559141684453486|2.48|151.0|3|1|sense REV__MER77_dup585|chr8:94772336-94772883:-|1.4249344530151613|0.2559141684453486|2.48|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 626.7512817382812 2 626.749344 1251.48414 NaN NaN NaN NaN NaN NaN NaN 54.256 1 57.757 57.257 58.257 3.5014 0 0 0 0.39428 1 12224 12224 2.0598 0.40713 1 + 32511 31559 20706 20717 37358 37358 -0.13154720203010584 QCWMSWPEW 9 Unmodified _QCWMSWPEW_ 0 0 0 REV__MER77_dup585|chr8:94772336-94772883:-|1.4249344530151613|0.2559141684453486|2.48|151.0|3|1|sense REV__MER77_dup585|chr8:94772336-94772883:-|1.4249344530151613|0.2559141684453486|2.48|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 626.7489013671875 2 626.749344 1251.48414 NaN NaN NaN NaN NaN NaN NaN 118.63 1 122.25 121.75 122.75 3.6189 0 0 0 0.39518 1 28937 28937 1.8442 0.19162 1 + 32512 31559 20706 20717 37359 37359 -0.13154720203010584 QCWRWDRV 8 Unmodified _QCWRWDRV_ 0 0 0 MSTB_dup6780|chr13:113257347-113257727:-|1.4749375601679915|0.4469472784437727|1.72|151.0|1|1|sense MSTB_dup6780|chr13:113257347-113257727:-|1.4749375601679915|0.4469472784437727|1.72|151.0|1|1|sense MSTB_dup6780|chr13:113257347-113257727:-|1.4749375601679915|0.4469472784437727|1.72|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 574.7779541015625 2 574.774542 1147.53453 NaN NaN NaN NaN NaN NaN NaN 67.886 1 71.394 70.894 71.894 3.5083 0 0 0 0.40625 1 15619 15619 2.3027 0.4585 1 32513 16570 20707 20718 37360 37360 -0.03333429763006279 QCYRRYIY 8 Unmodified _QCYRRYIY_ 0 0 0 L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|110|1|anti-sense L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|110|1|anti-sense L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.7867431640625 2 582.784576 1163.5546 NaN NaN NaN NaN NaN NaN NaN 114.77 1 118.27 117.77 118.77 3.5039 0 0 0 0.40746 1 27957 27957 0.69038 0 1 32514 8878 20708 20719 37361 37361 -0.020636788230376624 QDAYARLE 8 Unmodified _QDAYARLE_ 0 0 0 REV__L1ME3Cz_dup4895|chr6:150992298-150992547:+|1.0686248984553008|0.0175615880186624|5.93|151.0|20|3|anti-sense REV__L1ME3Cz_dup4895|chr6:150992298-150992547:+|1.0686248984553008|0.0175615880186624|5.93|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_1 2 483.2373962402344 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 36.275 1 39.944 39.444 40.444 3.6692 0 0 0 0.40738 1 6751 6751 0.79363 0 1 + 32515 28122 20709 20720 37362 37362 -0.02224280004634238 QDCNNPYFI 9 Unmodified _QDCNNPYFI_ 0 0 0 MER66-int_dup75|chr1:149681833-149683385:-|1.991980696433827|0.211184805491038|3.24|148.0|81|2|anti-sense MER66-int_dup75|chr1:149681833-149683385:-|1.991980696433827|0.211184805491038|3.24|148.0|81|2|anti-sense MER66-int_dup75|chr1:149681833-149683385:-|1.991980696433827|0.211184805491038|3.24|148.0|81|2|anti-sense MSMS UPN47_class_I_Rep_2 3 557.2371215820312 2 557.237124 1112.45969 NaN NaN NaN NaN NaN NaN NaN 117.34 1 120.82 120.32 121.32 3.4891 0 0 0 0.39518 1 28672 28672 1.8442 0 1 32516 16182 20710 20721 37363 37363 -0.09203657084890438 QDDFDDEDED 10 Unmodified _QDDFDDEDED_ 0 0 0 REV__ENSG00000010818|ENST00000367603|HIVEP2 REV__ENSG00000010818|ENST00000367603|HIVEP2 MSMS UPN48_class_I_Rep_3 7 621.6990966796875 2 621.699477 1241.3844 NaN NaN NaN NaN NaN NaN NaN 118.22 1 121.8 121.3 122.3 3.5847 0 0 0 0.53105 1 28112 28112 0.40072 0 1 + 32517 17574 20711 20722 37364 37364 -0.22663632592934846 QDDLFLSRY 9 Unmodified _QDDLFLSRY_ 0 0 0 MLT1D_dup19401|chr20:8410661-8411101:+|1.4909897574846729|0.0063062083938405|7.89|150.0|28|2|anti-sense MLT1D_dup19401|chr20:8410661-8411101:+|1.4909897574846729|0.0063062083938405|7.89|150.0|28|2|anti-sense MLT1D_dup19401|chr20:8410661-8411101:+|1.4909897574846729|0.0063062083938405|7.89|150.0|28|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 578.7850952148438 2 578.785296 1155.55604 0.43307 0.00025065 -0.40418 -0.00023393 0.028892 1.6722E-05 578.7850620256147 61.648 0.40405 61.648 61.485 61.889 0 71 38 2 0 0 0 0.26468 1 13714 13714 16.149 0 1 372390 32518 16345 20712 20723 37365 37365 -0.015517662533056864 QDDLVQSI 8 Unmodified _QDDLVQSI_ 0 0 0 nc|ENSG00000243477|O43820-3|HYAL3;ENSG00000186792|ENST00000336307|HYAL3 nc|ENSG00000243477|O43820-3|HYAL3 nc|ENSG00000243477|O43820-3|HYAL3 MULTI-MSMS UPN47_class_I_Rep_1 2 459.23211669921875 2 459.232364 916.450176 -0.20088 -9.225E-05 0.19151 8.7946E-05 -0.0093728 -4.3043E-06 459.23236214301585 45.052 1.2853 48.752 48.404 49.689 3.6999 157 76 3 0 0 0 0.82752 1 9585 9585 10.824 0 1 467140 32519 5164 20713 20724 37366 37366 -0.011391020987730371 QDEEAPLY 8 Unmodified _QDEEAPLY_ 0 0 0 L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|148|3|anti-sense L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|148|3|anti-sense L1MC2_dup893|chr2:184731875-184734088:-|1.506315127935928|0.0132191506547918|6.83|144.0|148|3|anti-sense MSMS UPN46_class_I_Rep_3 1 482.7957763671875 2 482.716547 963.418542 NaN NaN NaN NaN NaN NaN NaN 48.846 1 48.846 48.346 49.346 0 0 0 0 0.38221 1 10210 10210 14.582 0 1 32520 11289 20714 20725 37367 37367 -0.06463094852711038 QDERLPHY 8 Unmodified _QDERLPHY_ 0 0 0 ENSG00000124818|ENST00000371211|OPN5 ENSG00000124818|ENST00000371211|OPN5 ENSG00000124818|ENST00000371211|OPN5 MSMS UPN47_class_I_Rep_2 3 529.256591796875 2 529.256705 1056.49886 NaN NaN NaN NaN NaN NaN NaN 22.931 1 26.376 25.876 26.876 3.4447 0 0 0 0.40738 1 2804 2804 0.79363 0 1 32521 2490 20715 20726 37368 37368 -0.027131887389941767 QDFHMHLK 8 Unmodified _QDFHMHLK_ 0 0 0 nc|ENSG00000134146|Q7L8W6-2|DPH6 nc|ENSG00000134146|Q7L8W6-2|DPH6 nc|ENSG00000134146|Q7L8W6-2|DPH6 MSMS UPN46_class_I_Rep_3 1 528.258056640625 2 528.258194 1054.50183 NaN NaN NaN NaN NaN NaN NaN 17.97 1 17.97 17.47 18.47 0 0 0 0 0.40746 1 1496 1496 0.69038 0 1 32522 16686 20716 20727 37369 37369 -0.02323636885853375 QDGQYEDD 8 Unmodified _QDGQYEDD_ 0 0 0 REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.17547607421875 2 485.175244 968.335934 NaN NaN NaN NaN NaN NaN NaN 71.099 1 74.649 74.149 75.149 3.5505 0 0 0 0.40798 1 16567 16567 0 0 1 + 32523 19967 20717 20728 37370 37370 -0.1495003665152126 QDGTIHLYI 9 Unmodified _QDGTIHLYI_ 0 0 0 ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|2|intron;nc|ENSG00000005483|Q8IZD2-3|KMT2E;nc|ENSG00000005483|Q8IZD2-4|KMT2E;ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|3|intron;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.H1187Mfs*6|1|0.09|ENSG00000005483|chr7:105109029-105109029|C/-|frameshift_variant;ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|1|intron;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|2|intron ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 530.2769165039062 2 530.277106 1058.53966 0.24869 0.00013187 0.16284 8.635E-05 0.41152 0.00021822 530.2772017775557 56.749 0.38246 56.749 56.571 56.954 0 55 44 2 0 0 0 0.10817 1 12382 12382 32.305 0 1 283970 32524 701 20718 20729 37371 37371 0.012731525806202626 QDGTIHLYI 9 Unmodified _QDGTIHLYI_ 0 0 0 ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|2|intron;nc|ENSG00000005483|Q8IZD2-3|KMT2E;nc|ENSG00000005483|Q8IZD2-4|KMT2E;ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|3|intron;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.H1187Mfs*6|1|0.09|ENSG00000005483|chr7:105109029-105109029|C/-|frameshift_variant;ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|1|intron;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|2|intron ENSG00000005483.21,KMT2E,chr7,+,I9.1,105066808,105068474|40|15.8|2|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 530.277106 1058.53966 0.24869 0.00013187 0.16284 8.635E-05 0.41152 0.00021822 530.2772017775557 56.749 0.38246 56.749 56.571 56.954 0 0 0 NaN 32.305 55 44 2 NaN NaN NaN NaN 0 NaN NaN 0 283970 32525 701 20718 20729 0.012731525806202626 QDHKDDDKND 10 Unmodified _QDHKDDDKND_ 0 0 0 REV__nc|ENSG00000133958|Q9P2D8-2|UNC79 REV__nc|ENSG00000133958|Q9P2D8-2|UNC79 MSMS UPN47_class_I_Rep_1 2 615.2569580078125 2 615.255088 1228.49562 NaN NaN NaN NaN NaN NaN NaN 53.413 1 56.941 56.441 57.441 3.5278 0 0 0 0.53105 1 11965 11965 2.4985 0.84587 1 + 32526 19078 20719 20730 37372 37372 -0.10948528374342459 QDHTVLITV 9 Unmodified _QDHTVLITV_ 0 0 0 L1MB8_dup9867|chr10:12383733-12385739:+|2.526214040447069|0.0203326674253921|6.96|151.0|113|2|anti-sense;L1M3_dup5567|chr15:68096181-68097289:-|2.318909480543052|0.0511862366334406|5.5|151.0|53|2|anti-sense L1MB8_dup9867|chr10:12383733-12385739:+|2.526214040447069|0.0203326674253921|6.96|151.0|113|2|anti-sense L1MB8_dup9867|chr10:12383733-12385739:+|2.526214040447069|0.0203326674253921|6.96|151.0|113|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.2842407226562 2 513.284931 1024.55531 NaN NaN NaN NaN NaN NaN NaN 50.909 1 54.433 53.933 54.933 3.5246 0 0 0 0.39518 1 10445 10445 1.8442 0 1 32527 8774 20720 20731 37373 37373 0.044014390976599316 QDIKFNVP 8 Unmodified _QDIKFNVP_ 0 0 0 REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|43|3|sense REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.7612609863281 2 480.761092 959.507631 0.0635 3.0528E-05 -0.15113 -7.2656E-05 -0.087626 -4.2127E-05 480.7610609916823 53.768 1.3131 57.295 56.782 58.095 3.5278 159 74 4 0 0 0 0.82752 3 12172 12130;12172;12223 34.102 15.847 1 715870 + 32528 27563 20721 20732 37374;37375;37376 37375 0.026257848974637454 QDIKFNVP 8 Unmodified _QDIKFNVP_ 0 0 0 REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|43|3|sense REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.2621154785156 2 480.761092 959.507631 0.25634 0.00012324 -0.43439 -0.00020884 -0.17805 -8.5598E-05 480.7609292521821 54.005 1.2753 57.323 56.952 58.227 3.3187 168 70 4 0 0 0 0.82752 6 12335 12145;12182;12223;12267;12335;12342 50.855 10.824 1 673950 + 32529 27563 20721 20732 37377;37378;37379;37380;37381;37382 37381 0.026257848974637454 QDIKFNVP 8 Unmodified _QDIKFNVP_ 0 0 0 REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|43|3|sense REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.7610168457031 2 480.761092 959.507631 0.10943 5.2609E-05 -0.18555 -8.9207E-05 -0.076125 -3.6598E-05 480.76098467489265 54.131 1.0203 57.316 56.996 58.017 3.1856 170 62 4 0 0 0 0.82752 4 12266 12266;12306;12393;12441 50.855 10.824 1 857500 + 32530 27563 20721 20732 37383;37384;37385;37386 37383 0.026257848974637454 QDITDAEKY 9 Unmodified _QDITDAEKY_ 0 0 0 chr7:141935950-141945341|103|10.43|0.44|4.58|-|ENST00000551012|CLEC5A,CLEC5A;nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A chr7:141935950-141945341|103|10.43|0.44|4.58|-|ENST00000551012|CLEC5A,CLEC5A chr7:141935950-141945341|103|10.43|0.44|4.58|-|ENST00000551012|CLEC5A,CLEC5A MULTI-MSMS UPN47_class_I_Rep_1 2 541.75341796875 2 541.753661 1081.49277 -0.033941 -1.8388E-05 0.33434 0.00018113 0.3004 0.00016274 541.7537624080588 30.322 1.1412 34.067 33.716 34.857 3.7449 227 89 4 0 0 0 0.23293 1 4858 4858 18.146 0 1 659670 32531 618 20722 20733 37387 37387 -0.044717517611843505 QDITDAEKY 9 Unmodified _QDITDAEKY_ 0 0 0 chr7:141935950-141945341|103|10.43|0.44|4.58|-|ENST00000551012|CLEC5A,CLEC5A;nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A chr7:141935950-141945341|103|10.43|0.44|4.58|-|ENST00000551012|CLEC5A,CLEC5A chr7:141935950-141945341|103|10.43|0.44|4.58|-|ENST00000551012|CLEC5A,CLEC5A MULTI-MSMS UPN47_class_I_Rep_2 3 541.753173828125 2 541.753661 1081.49277 0.0059562 3.2268E-06 0.24889 0.00013484 0.25485 0.00013806 541.7536770781187 30.45 1.0878 33.932 33.569 34.657 3.4821 220 85 3 0 0 0 0.28552 1 5230 5230 14.838 0 1 731510 32532 618 20722 20733 37388 37388 -0.044717517611843505 QDIYRNKYWYW 11 Unmodified _QDIYRNKYWYW_ 0 0 0 REV__L1PB1_dup1568|chr2:168618535-168620014:+|1.321038085881865|0.0051562413509338|8.0|151.0|6|1|sense REV__L1PB1_dup1568|chr2:168618535-168620014:+|1.321038085881865|0.0051562413509338|8.0|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 545.7257080078125 3 545.596531 1633.76776 -0.027261 -1.4873E-05 -2.3737 -0.0012951 -2.401 -0.00131 545.5952767020941 27.139 0.098677 30.905 30.883 30.981 3.7662 6 5 2 0 0 0 0.68478 1 3999 3999 0.094841 0 1 37011 + 32533 29445 20723 20734 37389 37389 -0.023770945623482476 QDKRLVLK 8 Unmodified _QDKRLVLK_ 0 0 0 REV__L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|23|1|sense REV__L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|23|1|sense MSMS UPN47_class_I_Rep_2 3 500.31817626953125 2 500.319109 998.623664 NaN NaN NaN NaN NaN NaN NaN 17.361 1 20.747 20.247 21.247 3.387 0 0 0 0.40746 1 1284 1284 0.69038 0 1 + 32534 26657 20724 20735 37390 37390 0.12429728468168832 QDKYKEKY 8 Unmodified _QDKYKEKY_ 0 0 0 L1MEf_dup1397|chr2:135756649-135757765:-|1.2561570340750652|0.099184096600789|3.66|151.0|28|2|sense L1MEf_dup1397|chr2:135756649-135757765:-|1.2561570340750652|0.099184096600789|3.66|151.0|28|2|sense L1MEf_dup1397|chr2:135756649-135757765:-|1.2561570340750652|0.099184096600789|3.66|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 551.2735595703125 2 551.282389 1100.55022 0.4122 0.00022724 -0.056307 -3.1041E-05 0.35589 0.0001962 551.2823213958083 55.635 1.3554 58.812 58.33 59.686 3.1779 264 87 4 0 0 0 0.82752 1 12979 12979 13.906 1.6654 1 2752000 32535 13249 20725 20736 37391 37391 0.003971352350617963 QDLEVELFQR 10 Unmodified _QDLEVELFQR_ 0 0 0 REV__nc|ENSG00000137497|Q14980-4|NUMA1 REV__nc|ENSG00000137497|Q14980-4|NUMA1 MULTI-MSMS UPN47_class_I_Rep_2 3 638.830322265625 2 638.830234 1275.64592 0.40168 0.00025661 -0.087933 -5.6175E-05 0.31375 0.00020043 638.8302156233699 69.311 0.74634 72.587 72.372 73.119 3.2761 96 61 2 0 0 0 0.56118 1 16968 16968 2.9952 0 1 174740 + 32536 19234 20726 20737 37392 37392 0.019118633552579922 QDLGKKKTF 9 Unmodified _QDLGKKKTF_ 0 0 0 L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 532.267578125 2 532.808574 1063.60259 0.47146 0.0002512 -1.8621 -0.00099216 -1.3907 -0.00074097 533.3088593377106 59.259 0.37656 62.739 62.513 62.889 3.4801 29 21 2 0 0 0 0.11598 1 13036 13036 11.64 0 1 104780 32537 12925 20727 20738 37393 37393 0.07333718368636255 QDLGKKKTF 9 Unmodified _QDLGKKKTF_ 0 0 0 L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 532.2821044921875 2 532.808574 1063.60259 0.48075 0.00025615 -0.84121 -0.0004482 -0.36046 -0.00019206 532.8085701051655 59.094 0.27669 62.617 62.523 62.8 3.5231 23 16 2 0 0 0 0.12034 1 12843 12843 7.2892 0 1 105630 32538 12925 20727 20738 37394 37394 0.07333718368636255 QDLIEHPF 8 Unmodified _QDLIEHPF_ 0 0 0 REV__L1MC3_dup8075|chr10:38037624-38038125:-|1.01515802892525|0.0265765310612006|5.26|151.0|28|1|anti-sense REV__L1MC3_dup8075|chr10:38037624-38038125:-|1.01515802892525|0.0265765310612006|5.26|151.0|28|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 499.751220703125 2 499.750724 997.486896 0.2335 0.00011669 0.78183 0.00039072 1.0153 0.00050741 499.750958503416 60.312 0.35397 60.312 60.155 60.509 0 62 42 2 0 0 0 0.82752 2 13364 13364;13406 48.346 10.372 1 230660 + 32539 26779 20728 20739 37395;37396 37395 -0.011948054821914411 QDLKEDPL 8 Unmodified _QDLKEDPL_ 0 0 0 REV__ENST00000527315.5_1_15:69323805-69349033:+|nuORF REV__ENST00000527315.5_1_15:69323805-69349033:+|nuORF MSMS UPN47_class_I_Rep_3 4 479.264892578125 2 479.248015 956.481476 NaN NaN NaN NaN NaN NaN NaN 58.333 1 61.499 60.999 61.999 3.1658 0 0 0 0.40292 1 13547 13547 6.7232 0 1 + 32540 21379 20729 20740 37397 37397 0.001494709353323742 QDLNITFHQ 9 Unmodified _QDLNITFHQ_ 0 0 0 L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|64|2|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|64|2|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|64|2|sense MSMS UPN47_class_I_Rep_1 2 558.2771606445312 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 34.563 1 38.249 37.749 38.749 3.6859 0 0 0 0.3979 1 6235 6235 1.1933 0 1 32541 13870 20730 20741 37398 37398 -0.01196633050494711 QDLRVLAP 8 Unmodified _QDLRVLAP_ 0 0 0 L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|18|3|anti-sense L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|18|3|anti-sense L1MEc_dup16354|chr16:89390424-89390737:+|3.088621535214024|0.0390295506504464|6.31|151.0|18|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.7705383300781 2 456.269084 910.523616 -0.20898 -9.5352E-05 0.24668 0.00011255 0.037703 1.7203E-05 456.2691856312108 45.069 0.23271 48.769 48.666 48.899 3.6999 23 15 2 0 0 0 0.82752 1 9432 9432 4.756 0 1 40011 32542 13046 20731 20742 37399 37399 0.06477491134364755 QDLWGFFPQ 9 Unmodified _QDLWGFFPQ_ 0 0 0 chr1:52477882-52478843|75|10.07|0.31|5.0|-|0|TE_info:L2a,L2a_dup4322,L2,LINE,donor,-,52478843,52479116|TUT4,None|11 chr1:52477882-52478843|75|10.07|0.31|5.0|-|0|TE_info:L2a,L2a_dup4322,L2,LINE,donor,-,52478843,52479116|TUT4,None|11 chr1:52477882-52478843|75|10.07|0.31|5.0|-|0|TE_info:L2a,L2a_dup4322,L2,LINE,donor,-,52478843,52479116|TUT4,None|11 MULTI-MSMS UPN47_class_I_Rep_2 3 569.270751953125 2 569.271824 1136.5291 0.51773 0.00029473 -0.26614 -0.0001515 0.25159 0.00014322 569.2713249437527 55.228 0.49911 58.538 58.294 58.793 3.3102 46 29 2 0 0 0 0.48846 1 12553 12553 1.8442 0 1 63639 32543 570 20732 20743 37400 37400 -0.03370830073822617 QDLWWMPE 8 Unmodified _QDLWWMPE_ 0 0 0 MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense MER44B_dup1803|chr14:102675244-102675682:-|1.2576525585717953|0.0132708871970046|6.57|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_2 6 552.8419799804688 2 552.744585 1103.47462 NaN NaN NaN NaN NaN NaN NaN 113.73 1 117.39 116.89 117.89 3.663 0 0 0 0.40604 1 27154 27154 2.5775 0.51773 1 32544 15980 20733 20744 37401 37401 -0.07298165216889174 QDLYDKGKF 9 Unmodified _QDLYDKGKF_ 0 0 0 REV__ENSG00000156711|ENST00000211287|MAPK13 REV__ENSG00000156711|ENST00000211287|MAPK13 MULTI-MSMS UPN48_class_I_Rep_1 5 557.2825927734375 2 557.282389 1112.55022 0.46493 0.0002591 0.20334 0.00011332 0.66827 0.00037242 557.2823194089707 47.198 0.54317 50.72 50.45 50.994 3.5219 67 35 3 0 0 0 0.47197 1 9248 9248 3.5965 0 1 286900 + 32545 19804 20734 20745 37402 37402 -0.001548647649542545 QDLYTVLH 8 Unmodified _QDLYTVLH_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS UPN47_class_I_Rep_1 2 494.7585754394531 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 57.657 1 61.094 60.594 61.594 3.437 0 0 0 0.40292 1 13254 13254 6.7232 0 1 32546 5098 20735 20746 37403 37403 0.008294810348388637 QDLYTVLH 8 Unmodified _QDLYTVLH_ 0 0 0 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 ENSG00000185344|ENST00000330342|ATP6V0A2 MSMS UPN47_class_I_Rep_1 2 494.7581481933594 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 57.939 1 61.376 60.876 61.876 3.437 0 0 0 0.40472 1 13340 13340 4.3292 0 1 32547 5098 20735 20746 37404 37404 0.008294810348388637 QDLYVHLS 8 Unmodified _QDLYVHLS_ 0 0 0 L1ME3A_dup14733|chr19:55234600-55235076:+|2.8807482193538747|0.3628267150946762|2.99|151.0|3|1|sense L1ME3A_dup14733|chr19:55234600-55235076:+|2.8807482193538747|0.3628267150946762|2.99|151.0|3|1|sense L1ME3A_dup14733|chr19:55234600-55235076:+|2.8807482193538747|0.3628267150946762|2.99|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 487.91668701171875 2 487.750724 973.486896 0.33193 0.0001619 -0.35783 -0.00017453 -0.025901 -1.2633E-05 487.75058511377966 53.994 0.79566 57.312 56.884 57.68 3.3187 81 48 2 0 0 0 0.72333 1 12109 12109 6.7232 0 1 146410 32548 12649 20736 20747 37405 37405 -0.0009080548219344564 QDNIKATIL 9 Unmodified _QDNIKATIL_ 0 0 0 L1PREC2_dup7258|chr19:20224499-20225127:+|1.530473980787986|0.1089191798692195|3.81|148.0|19|3|sense L1PREC2_dup7258|chr19:20224499-20225127:+|1.530473980787986|0.1089191798692195|3.81|148.0|19|3|sense L1PREC2_dup7258|chr19:20224499-20225127:+|1.530473980787986|0.1089191798692195|3.81|148.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.29296875 2 508.292756 1014.57096 0.34386 0.00017478 -0.28436 -0.00014454 0.059502 3.0244E-05 508.29266043248913 63.867 0.49807 67.325 67.068 67.567 3.4578 48 36 2 0 0 0 0.19147 1 14417 14417 21.537 2.175 1 118390 32549 15481 20737 20748 37406 37406 0.06425725614712974 QDNIKATIL 9 Unmodified _QDNIKATIL_ 0 0 0 L1PREC2_dup7258|chr19:20224499-20225127:+|1.530473980787986|0.1089191798692195|3.81|148.0|19|3|sense L1PREC2_dup7258|chr19:20224499-20225127:+|1.530473980787986|0.1089191798692195|3.81|148.0|19|3|sense L1PREC2_dup7258|chr19:20224499-20225127:+|1.530473980787986|0.1089191798692195|3.81|148.0|19|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 508.292756 1014.57096 0.29529 0.0001501 0.13546 6.8852E-05 0.43075 0.00021895 508.29260185849785 63.547 0.49624 67.056 66.849 67.345 3.5091 -0.13448 0.00023794 NaN 21.537 52 39 2 NaN NaN NaN NaN 0 NaN NaN 0 103400 32550 15481 20737 20748 0.06425725614712974 QDNMRHGH 8 Unmodified _QDNMRHGH_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MSMS UPN48_class_I_Rep_1 5 497.4712829589844 2 497.717224 993.419896 NaN NaN NaN NaN NaN NaN NaN 29.516 1 33.066 32.566 33.566 3.5499 0 0 0 0.40746 1 4113 4113 0.69038 0 1 32551 678 20738 20749 37407 37407 -0.0770773924492687 QDNNLSVFQF 10 Unmodified _QDNNLSVFQF_ 0 0 0 REV__FLRT2|p.I609F|1|0.04|ENSG00000185070|chr14:85623339-85623339|A/T|missense_variant REV__FLRT2|p.I609F|1|0.04|ENSG00000185070|chr14:85623339-85623339|A/T|missense_variant MSMS UPN47_class_I_Rep_2 3 404.52862548828125 3 404.527894 1210.56185 NaN NaN NaN NaN NaN NaN NaN 25.437 1 28.92 28.42 29.42 3.483 0 0 0 0.53105 1 3531 3531 3.0723 0.077021 1 + 32552 23321 20739 20750 37408 37408 -0.03500667741627694 QDPDVREFL 9 Unmodified _QDPDVREFL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;ENST00000560260.5_1_15:64404820-64422215:+|nuORF nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS UPN47_class_I_Rep_3 4 559.7772216796875 2 559.77747 1117.54039 0.22462 0.00012574 -0.087143 -4.8781E-05 0.13747 7.6955E-05 559.7773358800715 45.053 1.6121 48.297 47.814 49.426 3.2441 250 99 4 0 0 0 0.42249 1 9540 9540 6.7232 6.7232 1 1214400 32553 830 20740 20751 37409 37409 -0.013680527703400003 QDQFLLLILPL 11 Unmodified _QDQFLLLILPL_ 0 0 0 REV__ENST00000586392.1_1_19:34884680-34890938:+|nuORF REV__ENST00000586392.1_1_19:34884680-34890938:+|nuORF MSMS UPN48_class_I_Rep_1 5 438.2686462402344 3 438.267351 1311.78022 NaN NaN NaN NaN NaN NaN NaN 104.65 1 108.27 107.77 108.77 3.6247 0 0 0 0.38417 1 25212 25212 1.0136 0.31591 1 + 32554 23146 20741 20752 37410 37410 0.1368054884801495 QDQLITRV 8 Unmodified _QDQLITRV_ 0 0 0 REV__L1MC5a_dup2|chr1:245104541-245105414:-|1.2297788398674887|0.0699562869827864|4.14|151.0|6|1|sense REV__L1MC5a_dup2|chr1:245104541-245105414:-|1.2297788398674887|0.0699562869827864|4.14|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.77777099609375 2 486.777274 971.539994 -0.049073 -2.3888E-05 -0.21794 -0.00010609 -0.26701 -0.00012998 486.7771426762967 45.263 0.61386 48.507 48.289 48.903 3.2441 47 39 2 0 0 0 0.82752 1 9574 9574 1.8442 0 1 78430 + 32555 27147 20742 20753 37411 37411 0.053085723004642205 QDQMSSQLS 9 Unmodified _QDQMSSQLS_ 0 0 0 L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|98|3|sense L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|98|3|sense L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|98|3|sense MSMS UPN47_class_I_Rep_2 3 512.2368774414062 2 512.224214 1022.43387 NaN NaN NaN NaN NaN NaN NaN 62.522 1 65.778 65.278 66.278 3.2558 0 0 0 0.39598 1 14771 14771 1.6526 0 1 32556 13959 20743 20754 37412 37412 -0.07644551327143745 QDRKPRNKLM 10 Unmodified _QDRKPRNKLM_ 0 0 0 L1MA8_dup7567|chr11:77742855-77744040:-|1.7231242369002475|0.0384603177985199|5.49|151.0|13|1|sense L1MA8_dup7567|chr11:77742855-77744040:-|1.7231242369002475|0.0384603177985199|5.49|151.0|13|1|sense L1MA8_dup7567|chr11:77742855-77744040:-|1.7231242369002475|0.0384603177985199|5.49|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 643.3619384765625 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 55.693 1 55.693 55.193 56.193 0 0 0 0 0.53105 1 12112 12112 1.4819 0 1 32557 10061 20744 20755 37413 37413 0.07750730942484552 QDRKPRNKLM 10 Unmodified _QDRKPRNKLM_ 0 0 0 L1MA8_dup7567|chr11:77742855-77744040:-|1.7231242369002475|0.0384603177985199|5.49|151.0|13|1|sense L1MA8_dup7567|chr11:77742855-77744040:-|1.7231242369002475|0.0384603177985199|5.49|151.0|13|1|sense L1MA8_dup7567|chr11:77742855-77744040:-|1.7231242369002475|0.0384603177985199|5.49|151.0|13|1|sense MSMS UPN47_class_I_Rep_1 2 643.3619995117188 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 95.607 1 99.372 98.872 99.872 3.7648 0 0 0 0.53105 1 23732 23732 1.4819 0 1 32558 10061 20744 20755 37414 37414 0.07750730942484552 QDRRMEME 8 Unmodified _QDRRMEME_ 0 0 0 ENSG00000278685|ENST00000615129|IQCA1L ENSG00000278685|ENST00000615129|IQCA1L ENSG00000278685|ENST00000615129|IQCA1L MSMS UPN48_class_I_Rep_3 7 547.7366943359375 2 547.739508 1093.46446 NaN NaN NaN NaN NaN NaN NaN 19.206 1 22.794 22.294 23.294 3.5874 0 0 0 0.40404 1 1410 1410 5.2307 0.90143 1 32559 5843 20745 20756 37415 37415 -0.07853096213739263 QDSKYSTF 8 Unmodified _QDSKYSTF_ 0 0 0 ENST00000472226.1_1_13:107209880-107209928:-|nuORF ENST00000472226.1_1_13:107209880-107209928:-|nuORF ENST00000472226.1_1_13:107209880-107209928:-|nuORF MSMS UPN46_class_I_Rep_3 1 488.2250671386719 2 488.224539 974.434526 NaN NaN NaN NaN NaN NaN NaN 33.935 1 33.935 33.435 34.435 0 0 0 0 0.39615 1 5998 5998 9.3831 0 1 32560 6932 20746 20757 37416 37416 -0.05371388615799333 QDSLQLEQF 9 Unmodified _QDSLQLEQF_ 0 0 0 ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENST00000523351.5_1_5:169188379-169509859:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 554.269775390625 2 554.269478 1106.5244 0.45414 0.00025171 0.020912 1.1591E-05 0.47505 0.00026331 554.269437328429 74.492 0.35872 77.738 77.472 77.831 3.2464 48 36 2 0 0 0 0.39745 2 18427 18427;18450 8.1555 0 1 105720 32561 2853 20747 20758 37417;37418 37417 -0.024597590072289677 QDSLQLEQF 9 Unmodified _QDSLQLEQF_ 0 0 0 ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENST00000523351.5_1_5:169188379-169509859:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 554.269478 1106.5244 0.40605 0.00022506 0.77309 0.0004285 1.1791 0.00065356 554.2697992384739 74.219 0.29569 77.613 77.409 77.705 3.3937 -0.078942 0.00058708 NaN 8.1555 35 27 2 NaN NaN NaN NaN 0 NaN NaN 0 78414 32562 2853 20747 20758 -0.024597590072289677 QDSPRLKAV 9 Unmodified _QDSPRLKAV_ 0 0 0 ENSG00000188152|ENST00000372322|NUTM2G;ENSG00000130950|ENST00000253262|NUTM2F ENSG00000188152|ENST00000372322|NUTM2G ENSG00000188152|ENST00000372322|NUTM2G MSMS UPN47_class_I_Rep_2 3 507.2904357910156 2 507.290548 1012.56654 NaN NaN NaN NaN NaN NaN NaN 37.934 1 41.322 40.822 41.822 3.3879 0 0 0 0.31276 1 7290 7290 10.074 0 1 32563 2689 20748 20759 37419 37419 0.06076261191810772 QDSYKIGY 8 Unmodified _QDSYKIGY_ 0 0 0 REV__L1MA4_dup8522|chr14:77524464-77525146:+|8.671762220881414|0.085331239050218|6.67|151.0|25|1|anti-sense REV__L1MA4_dup8522|chr14:77524464-77525146:+|8.671762220881414|0.085331239050218|6.67|151.0|25|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.2353515625 2 487.234907 972.455261 -0.14572 -7.1002E-05 0.21221 0.00010339 0.066483 3.2393E-05 487.23494335217873 40.606 0.92393 43.977 43.645 44.569 3.3712 111 74 2 0 0 0 0.82752 1 8247 8247 10.824 0 1 359000 + 32564 25217 20749 20760 37420 37420 -0.03206798236146824 QDTCFKAF 8 Unmodified _QDTCFKAF_ 0 0 0 L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|70|2|anti-sense L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|70|2|anti-sense L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_1 2 480.232666015625 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 23.01 1 26.714 26.214 27.214 3.7042 0 0 0 0.39624 1 2776 2776 9.3474 0 1 32565 9059 20750 20761 37421 37421 -0.059021232797022094 QDTERLVQ 8 Unmodified _QDTERLVQ_ 0 0 0 REV__nc|ENSG00000152818|P46939-2|UTRN REV__nc|ENSG00000152818|P46939-2|UTRN MULTI-MSMS UPN47_class_I_Rep_2 3 494.7564392089844 2 494.756538 987.498523 -0.13169 -6.5152E-05 -0.26917 -0.00013317 -0.40086 -0.00019833 494.75637252477287 34.066 0.57046 37.505 37.211 37.782 3.4398 56 37 2 0 0 0 0.82752 1 6113 6113 4.756 0 1 71255 + 32566 19694 20751 20762 37422 37422 0.00427391541131783 QDTLKKNEKSY 11 Unmodified _QDTLKKNEKSY_ 0 0 0 L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|82|3|sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|82|3|sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|82|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.9046936035156 3 451.905141 1352.69359 -1.0611 -0.00047953 0.29339 0.00013258 -0.76774 -0.00034695 451.90533477329296 16.002 0.79773 19.364 19.134 19.932 3.3619 186 96 3 0 0 0 0.4411 1 927 927 9.2438 0 1 132870 32567 12269 20752 20763 37423 37423 0.03135517555483602 QDVIGAIAGL 10 Unmodified _QDVIGAIAGL_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_1 2 479.275146484375 2 478.7742 955.533846 0.080058 3.833E-05 -0.37547 -0.00017976 -0.29541 -0.00014143 478.77398044945846 67.286 0.40579 70.647 70.363 70.769 3.3611 36 32 2 0 0 0 0.38974 1 16156 16156 20.415 0 1 71265 + 32568 19023 20753 20764 37424 37424 0.054300540689382615 QEAGIKTAF 9 Unmodified _QEAGIKTAF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS UPN47_class_I_Rep_2 3 482.7587890625 2 482.758549 963.502546 -0.19524 -9.4256E-05 -0.1428 -6.894E-05 -0.33805 -0.0001632 482.75844060867024 36.978 0.69441 40.377 40.009 40.704 3.3988 78 52 2 0 0 0 0.47197 2 6976 6976;7012 3.5965 1.019 1 81415 32569 2582 20754 20765 37425;37426 37425 0.01933481034848228 QEAGIKTAF 9 Unmodified _QEAGIKTAF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS UPN47_class_I_Rep_3 4 482.7581787109375 2 482.758549 963.502546 -0.40936 -0.00019762 -0.038764 -1.8714E-05 -0.44813 -0.00021634 482.7584879247399 37.108 0.60847 40.355 40.083 40.691 3.247 80 46 2 0 0 0 0.47197 1 7097 7097 3.5965 0.60125 1 128520 32570 2582 20754 20765 37427 37427 0.01933481034848228 QEAGLKFAT 9 Unmodified _QEAGLKFAT_ 0 0 0 nc|ENSG00000130830|Q00013-3|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 nc|ENSG00000130830|Q00013-3|MPP1 MULTI-MSMS UPN47_class_I_Rep_1 2 482.758056640625 2 482.758549 963.502546 -0.29055 -0.00014027 -0.078997 -3.8137E-05 -0.36955 -0.0001784 482.7584980572398 36.697 0.62811 40.367 40.089 40.717 3.6692 82 52 2 0 0 0 0.47763 1 6899 6899 2.9952 0 1 99298 32571 16682 20755 20766 37428 37428 0.01933481034848228 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN46_class_I_Rep_3 1 613.1829223632812 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 116.48 1 116.48 115.98 116.98 0 0 0 0 0.38417 1 28837 28837 0 0 1 + 32572 20199 20756 20767 37429 37429 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN46_class_I_Rep_3 1 613.1813354492188 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 118.81 1 118.81 118.31 119.31 0 0 0 0 0.38417 1 29503 29503 0 0 1 + 32573 20199 20756 20767 37430 37430 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN47_class_I_Rep_2 3 613.1812133789062 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 19.063 1 22.453 21.953 22.953 3.3898 0 0 0 0.38417 1 1725 1725 0 0 1 + 32574 20199 20756 20767 37431 37431 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN47_class_I_Rep_2 3 613.1801147460938 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 20.552 1 23.96 23.46 24.46 3.4074 0 0 0 0.38417 1 2153 2153 0 0 1 + 32575 20199 20756 20767 37432 37432 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN47_class_I_Rep_2 3 613.1815185546875 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 21.322 1 24.732 24.232 25.232 3.4095 0 0 0 0.38417 1 2366 2366 0 0 1 + 32576 20199 20756 20767 37433 37433 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN47_class_I_Rep_2 3 613.1808471679688 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 28.262 1 31.761 31.261 32.261 3.4986 0 0 0 0.38417 1 4361 4361 0 0 1 + 32577 20199 20756 20767 37434 37434 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN47_class_I_Rep_3 4 613.1795043945312 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 29.483 1 32.807 32.307 33.307 3.3235 0 0 0 0.38417 1 4773 4773 0 0 1 + 32578 20199 20756 20767 37435 37435 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_1 5 613.1826782226562 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 12.191 1 15.703 15.203 16.203 3.5124 0 0 0 0.38417 1 32 32 0 0 1 + 32579 20199 20756 20767 37436 37436 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_1 5 613.1798095703125 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 12.212 1 15.725 15.225 16.225 3.5124 0 0 0 0.38417 1 36 36 0 0 1 + 32580 20199 20756 20767 37437 37437 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_1 5 613.1821899414062 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 12.375 1 15.887 15.387 16.387 3.5124 0 0 0 0.38417 1 64 64 0 0 1 + 32581 20199 20756 20767 37438 37438 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_1 5 613.3524780273438 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 72.582 1 76.055 75.555 76.555 3.4732 0 0 0 0.38417 1 17044 17044 0 0 1 + 32582 20199 20756 20767 37439 37439 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_2 6 613.1826782226562 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 27.881 1 31.512 31.012 32.012 3.6311 0 0 0 0.38417 1 3761 3761 0 0 1 + 32583 20199 20756 20767 37440 37440 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_3 7 613.1826171875 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 21.453 1 25.167 24.667 25.667 3.7144 0 0 0 0.38417 1 2016 2016 0 0 1 + 32584 20199 20756 20767 37441 37441 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_3 7 613.184326171875 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 28.663 1 32.405 31.905 32.905 3.7424 0 0 0 0.38417 1 3927 3927 0 0 1 + 32585 20199 20756 20767 37442 37442 -0.2550282756665183 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS UPN48_class_I_Rep_3 7 613.1824340820312 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 34.176 1 37.856 37.356 38.356 3.6797 0 0 0 0.38417 1 5400 5400 0 0 1 + 32586 20199 20756 20767 37443 37443 -0.2550282756665183 QEDAGIIFVG 10 Unmodified _QEDAGIIFVG_ 0 0 0 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 MULTI-MSMS UPN47_class_I_Rep_1 2 524.7686767578125 2 524.769114 1047.52368 0.33088 0.00017364 -0.37267 -0.00019557 -0.041792 -2.1931E-05 524.7688980468947 77.039 0.53658 80.454 80.252 80.788 3.4149 67 45 2 0 0 0 0.43106 2 19079 19079;19126 17.113 2.8575 1 123710 32587 2515 20757 20768 37444;37445 37444 0.001814463437312952 QEDAGIIFVG 10 Unmodified _QEDAGIIFVG_ 0 0 0 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 524.769114 1047.52368 0.1056 5.5415E-05 -0.046359 -2.4328E-05 0.059239 3.1087E-05 524.7690200658335 77.221 0.55687 80.553 80.239 80.796 3.3315 0.022988 0.00016446 NaN 17.113 82 55 2 NaN NaN NaN NaN 0 NaN NaN 0 152020 32588 2515 20757 20768 0.001814463437312952 QEDAGIIFVG 10 Unmodified _QEDAGIIFVG_ 0 0 0 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 MULTI-MATCH UPN47_class_I_Rep_3 4 2 524.769114 1047.52368 0.36443 0.00019124 -0.33616 -0.00017641 0.028261 1.4831E-05 524.7688784459295 77.313 0.58317 80.582 80.256 80.839 3.269 0.052592 -0.0001397 NaN 17.113 100 62 2 NaN NaN NaN NaN 0 NaN NaN 0 140910 32589 2515 20757 20768 0.001814463437312952 QEDCELFAQ 9 Unmodified _QEDCELFAQ_ 0 0 0 MER83_dup386|chr18:62240882-62241309:+|1.2782077261992832|0.1819259602565246|2.81|151.0|18|1|anti-sense MER83_dup386|chr18:62240882-62241309:+|1.2782077261992832|0.1819259602565246|2.81|151.0|18|1|anti-sense MER83_dup386|chr18:62240882-62241309:+|1.2782077261992832|0.1819259602565246|2.81|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 541.7266845703125 2 541.726589 1081.43863 NaN NaN NaN NaN NaN NaN NaN 68.133 1 68.133 67.633 68.633 0 0 0 0 0.39598 1 15544 15544 1.6526 0.85899 1 32590 16219 20758 20769 37446 37446 -0.09883667184408296 QEDDEGEEGD 10 Unmodified _QEDDEGEEGD_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.T3506Yfs*46|1|0.45|ENSG00000086758|chrX:53547794-53547795|-/G|frameshift_variant nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS UPN48_class_I_Rep_2 6 561.68896484375 2 561.688912 1121.36327 NaN NaN NaN NaN NaN NaN NaN 82.865 1 86.534 86.034 87.034 3.669 0 0 0 0.53105 1 19683 19683 0 0 1 32591 1286 20759 20770 37447 37447 -0.1925559790176976 QEDLRTFSW 9 Unmodified _QEDLRTFSW_ 0 0 0 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 MULTI-MSMS UPN47_class_I_Rep_1 2 591.2836303710938 2 591.28292 1180.55129 0.40039 0.00023674 0.096465 5.7038E-05 0.49686 0.00029378 591.282854559237 58.541 0.76083 61.958 61.583 62.344 3.4171 78 50 2 0 0 0 0.20317 1 13508 13508 20.415 11.031 1 132740 32592 3417 20760 20771 37448 37448 -0.031766503960625414 QEDLRTFSW 9 Unmodified _QEDLRTFSW_ 0 0 0 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 MULTI-MSMS UPN47_class_I_Rep_2 3 590.8136596679688 2 591.28292 1180.55129 0.51971 0.0003073 -0.25095 -0.00014838 0.26877 0.00015892 591.2826802117829 58.684 0.48877 61.966 61.708 62.197 3.2818 45 27 2 0 0 0 0.39745 1 13558 13558 8.1555 3.8263 1 113270 32593 3417 20760 20771 37449 37449 -0.031766503960625414 QEDYLRELL 9 Unmodified _QEDYLRELL_ 0 0 0 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MULTI-MSMS UPN48_class_I_Rep_1 5 589.8067016601562 2 589.806228 1177.5979 0.47661 0.00028111 0.32006 0.00018877 0.79667 0.00046988 589.8063525304566 67.522 0.49564 70.974 70.742 71.238 3.4516 52 35 2 0 0 0 0.16799 4 15556 15510;15545;15556;15567 23.79 9.8837 1 169250 32594 1580 20761 20772 37450;37451;37452;37453 37452 0.016207894352419316 QEDYLRELL 9 Unmodified _QEDYLRELL_ 0 0 0 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MULTI-SECPEP UPN48_class_I_Rep_2 6 589.8065185546875 2 589.806228 1177.5979 0.49681 0.00029302 0.10473 6.1773E-05 0.60154 0.00035479 589.8061832147524 67.337 0.46538 70.833 70.654 71.12 3.4963 67 39 2 0 0 0 0.1229 1 15442 15442 4.897 4.3722 1 131070 32595 1580 20761 20772 37454 37454 0.016207894352419316 QEDYLRELL 9 Unmodified _QEDYLRELL_ 0 0 0 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MULTI-MSMS UPN48_class_I_Rep_3 7 589.806396484375 2 589.806228 1177.5979 0.56385 0.00033256 -0.18425 -0.00010867 0.3796 0.00022389 590.3079260014865 67.52 0.15379 71.028 70.914 71.067 3.5077 20 15 2 0 0 0 0.39745 1 15426 15426 8.1555 1.9497 1 139520 32596 1580 20761 20772 37455 37455 0.016207894352419316 QEDYLRELL 9 Unmodified _QEDYLRELL_ 0 0 0 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MSMS UPN48_class_I_Rep_3 7 589.8063354492188 2 589.806228 1177.5979 NaN NaN NaN NaN NaN NaN NaN 67.246 1 70.754 70.254 71.254 3.5077 0 0 0 0.29913 1 15338 15338 10.8 4.5937 1 32597 1580 20761 20772 37456 37456 0.016207894352419316 QEDYLRELL 9 Unmodified _QEDYLRELL_ 0 0 0 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000431574.1_1_6:33306912-33307269:+|nuORF ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MSMS UPN48_class_I_Rep_3 7 589.8068237304688 2 589.806228 1177.5979 NaN NaN NaN NaN NaN NaN NaN 67.377 1 70.885 70.385 71.385 3.5077 0 0 0 0.29913 1 15377 15377 10.8 4.5937 1 32598 1580 20761 20772 37457 37457 0.016207894352419316 QEEAAAAAAEP 11 Unmodified _QEEAAAAAAEP_ 0 0 0 ENSG00000136950|ENST00000353214|ARPC5L ENSG00000136950|ENST00000353214|ARPC5L ENSG00000136950|ENST00000353214|ARPC5L MSMS UPN48_class_I_Rep_1 5 529.242431640625 2 529.24346 1056.47237 NaN NaN NaN NaN NaN NaN NaN 118.3 1 121.92 121.42 122.42 3.6196 0 0 0 0.38417 1 28850 28850 1.0715 0 1 32599 3000 20762 20773 37458 37458 -0.05360922421004943 QEEAYRVLY 9 Unmodified _QEEAYRVLY_ 0 0 0 REV__nc|ENSG00000103723|Q13367|AP3B2 REV__nc|ENSG00000103723|Q13367|AP3B2 MULTI-MSMS UPN47_class_I_Rep_2 3 585.7929077148438 2 585.793121 1169.57169 0.51626 0.00030242 -0.06119 -3.5845E-05 0.45507 0.00026658 585.7925786370781 52.868 1.4109 56.194 55.806 57.217 3.3266 153 99 2 0 0 0 0.17468 1 11932 11932 23.148 2.6948 1 1108400 + 32600 18240 20763 20774 37459 37459 -0.00631479736239271 QEEDDDDEE 9 Unmodified _QEEDDDDEE_ 0 0 0 nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30185004-30189497:-|nuORF nc|ENSG00000100325|Q9H1I8-3|ASCC2 nc|ENSG00000100325|Q9H1I8-3|ASCC2 MSMS UPN46_class_I_Rep_3 1 562.1808471679688 2 562.18092 1122.34729 NaN NaN NaN NaN NaN NaN NaN 16.982 1 16.982 16.482 17.482 0 0 0 0 0.4029 1 1266 1266 0 0 1 32601 1493 20764 20775 37460 37460 -0.20899304138720254 QEEELYYE 8 Unmodified _QEEELYYE_ 0 0 0 REV__ENST00000603513.1_1_7:130039868-130040375:-|nuORF REV__ENST00000603513.1_1_7:130039868-130040375:-|nuORF MSMS UPN47_class_I_Rep_1 2 551.732666015625 2 551.732394 1101.45024 NaN NaN NaN NaN NaN NaN NaN 15.736 1 19.233 18.733 19.733 3.4968 0 0 0 0.40625 1 892 892 2.3027 0 1 + 32602 23222 20765 20776 37461 37461 -0.09643146889402487 QEEPSHISVL 10 Unmodified _QEEPSHISVL_ 0 0 0 REV__ENST00000597934.1_1_19:7754081-7762121:-|nuORF REV__ENST00000597934.1_1_19:7754081-7762121:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 570.292724609375 2 569.790578 1137.5666 0.38239 0.00021788 -0.30227 -0.00017223 0.080121 4.5652E-05 570.2920586439632 46.759 0.46546 50.396 50.123 50.588 3.6363 33 29 2 0 0 0 0.54822 1 9099 9099 5.7319 0 1 94608 + 32603 17443 20766 20777 37462 37462 0.0033221640114788897 QEEQKTHT 8 Unmodified _QEEQKTHT_ 0 0 0 nc|ENSG00000285253|Q6N043-4|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D nc|ENSG00000285253|Q6N043-4|ZNF280D nc|ENSG00000285253|Q6N043-4|ZNF280D MSMS UPN48_class_I_Rep_2 6 500.7373962402344 2 500.738345 999.462138 NaN NaN NaN NaN NaN NaN NaN 20.499 1 24.147 23.647 24.647 3.648 0 0 0 0.40527 1 1774 1774 3.5965 0 1 32604 3050 20767 20778 37463 37463 -0.03761485355573768 QEESLRTYL 9 Unmodified _QEESLRTYL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS UPN48_class_I_Rep_2 6 569.7904663085938 2 569.790578 1137.5666 NaN NaN NaN NaN NaN NaN NaN 46.579 1 50.328 49.828 50.828 3.7494 0 0 0 0.39036 1 9118 9118 2.9952 0 1 32605 5036 20768 20779 37464 37464 0.0033221640117062634 QEFGVPHQY 9 Unmodified _QEFGVPHQY_ 0 0 0 nc|ENSG00000198408|O60502-3|OGA;ENSG00000198408|ENST00000361464|OGA nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-3|OGA MULTI-MSMS UPN47_class_I_Rep_2 3 552.7594604492188 2 552.759081 1103.50361 0.070993 3.9242E-05 0.44901 0.0002482 0.52001 0.00028744 552.7592783999197 42.252 0.67261 45.613 45.24 45.913 3.3611 92 50 2 0 0 0 0.47197 2 8544 8544;8583 3.5965 1.019 1 95912 32606 5430 20769 20780 37465;37466 37465 -0.04400304596242677 QEFGVPHQY 9 Unmodified _QEFGVPHQY_ 0 0 0 nc|ENSG00000198408|O60502-3|OGA;ENSG00000198408|ENST00000361464|OGA nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-3|OGA MULTI-MSMS UPN47_class_I_Rep_3 4 552.7603759765625 2 552.759081 1103.50361 0.075328 4.1638E-05 0.25201 0.0001393 0.32734 0.00018094 552.7592048981452 42.365 0.66424 45.604 45.256 45.92 3.2394 77 46 2 0 0 0 0.30034 1 8698 8698 13.906 3.0821 1 98376 32607 5430 20769 20780 37467 37467 -0.04400304596242677 QEFIRVGY 8 Unmodified _QEFIRVGY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS UPN47_class_I_Rep_2 3 506.26641845703125 2 506.266542 1010.51853 0.13735 6.9534E-05 -0.10996 -5.5668E-05 0.027389 1.3866E-05 506.26651042265604 49.475 0.66178 52.822 52.574 53.236 3.3465 64 43 2 0 0 0 0.82752 1 10804 10804 16.942 8.349 1 115690 32608 1714 20770 20781 37468 37468 0.01369187271757255 QEFIRVGY 8 Unmodified _QEFIRVGY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.266542 1010.51853 0.044295 2.2425E-05 -0.21207 -0.00010736 -0.16777 -8.4937E-05 506.2664201964857 49.198 0.62712 52.857 52.5 53.127 3.6592 0.02042 4.0988E-05 NaN 16.942 73 46 2 NaN NaN NaN NaN 0 NaN NaN 0 114820 32609 1714 20770 20781 0.01369187271757255 QEFIRVGY 8 Unmodified _QEFIRVGY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MATCH UPN47_class_I_Rep_3 4 2 506.266542 1010.51853 0.27097 0.00013718 -0.43404 -0.00021974 -0.16307 -8.2557E-05 506.26622929089103 49.605 0.65063 52.831 52.491 53.142 3.2262 -0.0053518 -0.00018377 NaN 16.942 56 37 2 NaN NaN NaN NaN 0 NaN NaN 0 98881 32610 1714 20770 20781 0.01369187271757255 QEFIRVGYY 9 Unmodified _QEFIRVGYY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS UPN47_class_I_Rep_1 2 587.7967529296875 2 587.798206 1173.58186 0.35096 0.0002063 -0.2923 -0.00017182 0.05866 3.448E-05 587.7979455129074 55.625 0.64443 59.104 58.867 59.511 3.4785 60 39 2 0 0 0 0.25207 4 12675 12616;12621;12655;12675 16.942 7.2293 1 89353 32611 1714 20771 20782 37469;37470;37471;37472 37472 0.0020112798899845075 QEFIRVGYY 9 Unmodified _QEFIRVGYY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS UPN47_class_I_Rep_2 3 587.7977905273438 2 587.798206 1173.58186 0.51801 0.00030448 -0.3243 -0.00019062 0.19371 0.00011386 587.7978752078355 55.834 0.49892 59.144 58.929 59.428 3.3102 48 28 2 0 0 0 0.41259 1 12750 12750 7.2892 1.0834 1 111870 32612 1714 20771 20782 37473 37473 0.0020112798899845075 QEFIRVGYY 9 Unmodified _QEFIRVGYY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS UPN47_class_I_Rep_3 4 588.3016357421875 2 587.798206 1173.58186 0.40941 0.00024065 -0.039052 -2.2955E-05 0.37036 0.0002177 587.7982297783354 55.997 0.52085 59.172 58.979 59.5 3.1744 53 37 2 0 0 0 0.13631 3 12838 12838;12845;12877 26.884 16.425 1 69602 32613 1714 20771 20782 37474;37475;37476 37474 0.0020112798899845075 QEFIRVGYY 9 Unmodified _QEFIRVGYY_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B;ENSG00000111875|ENST00000229595|ASF1A ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MATCH UPN47_class_I_Rep_2 3 2 587.798206 1173.58186 0.51827 0.00030464 -1.1394 -0.00066975 -0.62115 -0.00036511 588.2996854816665 56.164 0.058224 59.465 59.437 59.495 3.3009 0.1806 -0.00092429 NaN 16.942 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 40535 32614 1714 20771 20782 0.0020112798899845075 QEFNLVKRNV 10 Unmodified _QEFNLVKRNV_ 0 0 0 REV__ENSG00000135040|ENST00000361671|NAA35 REV__ENSG00000135040|ENST00000361671|NAA35 MULTI-MSMS UPN47_class_I_Rep_1 2 416.2352600097656 3 416.234933 1245.68297 0.09895 4.1186E-05 0.90192 0.00037541 1.0009 0.0004166 416.23517441742734 103.57 0.18593 107.35 107.23 107.42 3.7788 35 27 2 0 0 0 0.56078 1 25472 25472 1.5923 0 1 10870000 + 32615 19122 20772 20783 37477 37477 0.0699557969169291 QEFNLVKRNV 10 Unmodified _QEFNLVKRNV_ 0 0 0 REV__ENSG00000135040|ENST00000361671|NAA35 REV__ENSG00000135040|ENST00000361671|NAA35 MSMS UPN48_class_I_Rep_1 5 416.23486328125 3 416.234933 1245.68297 NaN NaN NaN NaN NaN NaN NaN 104.39 1 108.02 107.52 108.52 3.6247 0 0 0 0.53105 1 25147 25147 1.5923 0 1 + 32616 19122 20772 20783 37478 37478 0.0699557969169291 QEFPFWPRVC 10 Unmodified _QEFPFWPRVC_ 0 0 0 L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|64|1|anti-sense L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|64|1|anti-sense L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_1 2 436.8793640136719 3 436.877981 1307.61211 NaN NaN NaN NaN NaN NaN NaN 85.527 1 89.119 88.619 89.619 3.5914 0 0 0 0.53105 1 21358 21358 0.69767 0 1 32617 9595 20773 20784 37479 37479 -0.029388366174771363 QEGPQLFF 8 Unmodified _QEGPQLFF_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MSMS UPN48_class_I_Rep_2 6 483.2380676269531 2 483.239993 964.465432 NaN NaN NaN NaN NaN NaN NaN 62.119 1 65.593 65.093 66.093 3.4738 0 0 0 0.39819 1 13855 13855 8.5933 2.8329 1 + 32618 17588 20774 20785 37480 37480 -0.0182219051090442 QEICVTLIY 9 Unmodified _QEICVTLIY_ 0 0 0 L1MEf_dup10045|chr16:12657548-12658382:-|1.3236144734595443|0.0483971628642517|4.77|151.0|50|2|anti-sense L1MEf_dup10045|chr16:12657548-12658382:-|1.3236144734595443|0.0483971628642517|4.77|151.0|50|2|anti-sense L1MEf_dup10045|chr16:12657548-12658382:-|1.3236144734595443|0.0483971628642517|4.77|151.0|50|2|anti-sense MSMS UPN46_class_I_Rep_3 1 541.2848510742188 2 541.283543 1080.55253 NaN NaN NaN NaN NaN NaN NaN 27.323 1 27.323 26.823 27.823 0 0 0 0 0.39598 1 4042 4042 1.6526 0 1 32619 13225 20775 20786 37481 37481 0.015478476485213832 QEIPVNVRF 9 Unmodified _QEIPVNVRF_ 0 0 0 ENSG00000133313|ENST00000324262|CNDP2 ENSG00000133313|ENST00000324262|CNDP2 ENSG00000133313|ENST00000324262|CNDP2 MULTI-SECPEP UPN47_class_I_Rep_1 2 550.77197265625 2 551.306198 1100.59784 0.39277 0.00021654 -0.19515 -0.00010759 0.19762 0.00010895 551.3058184711841 56.343 0.47758 59.8 59.609 60.087 3.4572 44 25 2 0 0 0 0.12321 1 12917 12917 3.9444 3.9444 1 84580 32620 2799 20776 20787 37482 37482 0.051568342258860866 QEITRYQY 8 Unmodified _QEITRYQY_ 0 0 0 ENST00000554628.5_1_14:88959357-89016761:-|nuORF;ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21 ENST00000554628.5_1_14:88959357-89016761:-|nuORF ENST00000554628.5_1_14:88959357-89016761:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 550.7736206054688 2 550.772188 1099.52982 0.39035 0.000215 -0.43879 -0.00024167 -0.048435 -2.6676E-05 550.7720946857578 56.084 0.9861 59.563 59.212 60.198 3.4785 116 58 3 0 0 0 0.82752 3 12934 12869;12917;12934 9.3474 0 1 436250 32621 1079 20777 20788 37483;37484;37485 37485 -0.015960354247454234 QEITRYQY 8 Unmodified _QEITRYQY_ 0 0 0 ENST00000554628.5_1_14:88959357-89016761:-|nuORF;ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21 ENST00000554628.5_1_14:88959357-89016761:-|nuORF ENST00000554628.5_1_14:88959357-89016761:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 550.7723999023438 2 550.772188 1099.52982 0.50561 0.00027848 -0.62913 -0.00034651 -0.12352 -6.803E-05 550.7720337255846 56.455 0.89194 59.756 59.336 60.228 3.3009 136 61 3 0 0 0 0.82752 2 12930 12930;12974 9.3474 0 1 378840 32622 1079 20777 20788 37486;37487 37486 -0.015960354247454234 QEITRYQY 8 Unmodified _QEITRYQY_ 0 0 0 ENST00000554628.5_1_14:88959357-89016761:-|nuORF;ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21 ENST00000554628.5_1_14:88959357-89016761:-|nuORF ENST00000554628.5_1_14:88959357-89016761:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 550.7720947265625 2 550.772188 1099.52982 0.3833 0.00021111 -0.64356 -0.00035445 -0.26025 -0.00014334 550.7719776634939 56.588 0.91109 59.76 59.308 60.219 3.1721 134 66 3 0 0 0 0.82752 2 13064 13064;13102 18.135 7.3111 1 475210 32623 1079 20777 20788 37488;37489 37488 -0.015960354247454234 QEITSFEI 8 Unmodified _QEITSFEI_ 0 0 0 ENST00000495782.1_1_3:113801459-113804748:+|nuORF;ENST00000483272.1_1_3:113798714-113804748:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2 ENST00000495782.1_1_3:113801459-113804748:+|nuORF ENST00000495782.1_1_3:113801459-113804748:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.7427978515625 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.82752 1 10056 10056 3.9444 0 1 1297200 32624 3594 20778 20789 37490 37490 -0.01353931438939071 QEITSGKIL 9 Unmodified _QEITSGKIL_ 0 0 0 L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|112|1|anti-sense L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|112|1|anti-sense L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|112|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.787109375 2 494.787307 987.560061 -0.33407 -0.00016529 0.11463 5.6719E-05 -0.21944 -0.00010858 494.7873531316533 17.806 1.0785 21.356 20.962 22.041 3.5504 215 129 2 0 0 0 0.35123 1 1378 1378 10.8 0.72558 1 108270 32625 12364 20779 20790 37491 37491 0.06578323240444206 QEITSGKIL 9 Unmodified _QEITSGKIL_ 0 0 0 L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|112|1|anti-sense L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|112|1|anti-sense L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|112|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.787109375 2 494.787307 987.560061 -0.58696 -0.00029042 0.40444 0.00020011 -0.18251 -9.0306E-05 494.78754546027153 18.544 0.85792 21.898 21.504 22.362 3.3545 124 90 2 0 0 0 0.41587 1 1571 1571 7.1017 0.89594 1 71441 32626 12364 20779 20790 37492 37492 0.06578323240444206 QEKCQYHSIV 10 Unmodified _QEKCQYHSIV_ 0 0 0 REV__ENSG00000155876|ENST00000380527|RRAGA REV__ENSG00000155876|ENST00000380527|RRAGA MSMS UPN47_class_I_Rep_1 2 617.7999877929688 2 617.79788 1233.58121 NaN NaN NaN NaN NaN NaN NaN 45.287 1 48.987 48.487 49.487 3.6999 0 0 0 0.53105 1 9497 9497 2.9952 0.93549 1 + 32627 17936 20780 20791 37493 37493 -0.026240347223847493 QEKDVFERY 9 Unmodified _QEKDVFERY_ 0 0 0 CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3 CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 405.19976806640625 3 405.199777 1212.5775 -1.2743 -0.00051634 0.92317 0.00037407 -0.35112 -0.00014228 405.2001240671953 31.832 0.31888 35.131 34.965 35.284 3.2991 42 24 2 0 0 0 0.49851 1 5484 5484 0.77653 0.14971 1 56995 32628 657 20781 20792 37494 37494 -0.020283812245679655 QEKDVFERY 9 Unmodified _QEKDVFERY_ 0 0 0 CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3 CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_1 2 3 405.199777 1212.5775 -0.46651 -0.00018903 -0.095697 -3.8776E-05 -0.5622 -0.0002278 405.1997634944379 31.369 0.50265 35.098 34.889 35.391 3.7293 -0.053759 -0.00073332 NaN 0.77653 42 35 2 NaN NaN NaN NaN 0 NaN NaN 0 45328 32629 657 20781 20792 -0.020283812245679655 QEKDVFERY 9 Unmodified _QEKDVFERY_ 0 0 0 CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3 CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant CUL3|p.I455Nfs*3|1|0.07|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_2 3 3 405.199777 1212.5775 -1.0012 -0.00040568 0.70366 0.00028512 -0.29752 -0.00012055 405.1999193098181 31.758 0.27838 35.227 35.059 35.337 3.4691 0.075123 0.00023838 NaN 0.77653 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 42816 32630 657 20781 20792 -0.020283812245679655 QEKELQRY 8 Unmodified _QEKELQRY_ 0 0 0 ENSG00000004846|ENST00000404938|ABCB5 ENSG00000004846|ENST00000404938|ABCB5 ENSG00000004846|ENST00000404938|ABCB5 MULTI-MSMS UPN47_class_I_Rep_1 2 547.286376953125 2 547.285463 1092.55637 0.23304 0.00012754 0.08192 4.4833E-05 0.31496 0.00017237 547.2856611070489 48.342 0.42765 52.024 51.814 52.242 3.6819 37 25 2 0 0 0 0.82752 2 10440 10440;10458 15.847 1.9411 1 119670 32631 687 20782 20793 37495;37496 37495 0.01379653466574382 QEKELQRY 8 Unmodified _QEKELQRY_ 0 0 0 ENSG00000004846|ENST00000404938|ABCB5 ENSG00000004846|ENST00000404938|ABCB5 ENSG00000004846|ENST00000404938|ABCB5 MULTI-MSMS UPN47_class_I_Rep_2 3 547.286376953125 2 547.285463 1092.55637 0.35294 0.00019316 -0.23384 -0.00012798 0.1191 6.5184E-05 547.2852916401235 48.633 0.59671 51.98 51.794 52.39 3.3465 41 33 2 0 0 0 0.82752 2 10561 10561;10589 7.9102 1.187 1 99513 32632 687 20782 20793 37497;37498 37497 0.01379653466574382 QEKELQRY 8 Unmodified _QEKELQRY_ 0 0 0 ENSG00000004846|ENST00000404938|ABCB5 ENSG00000004846|ENST00000404938|ABCB5 ENSG00000004846|ENST00000404938|ABCB5 MULTI-MSMS UPN47_class_I_Rep_3 4 547.787353515625 2 547.285463 1092.55637 0.41111 0.000225 -0.33268 -0.00018207 0.078435 4.2927E-05 547.2852642560314 48.806 0.50083 52.04 51.802 52.303 3.2345 44 27 2 0 0 0 0.82752 2 10692 10649;10692 10.824 2.6133 1 104330 32633 687 20782 20793 37499;37500 37500 0.01379653466574382 QEKGIQYFF 9 Unmodified _QEKGIQYFF_ 0 0 0 REV__L1ME4b_dup17341|chr15:64668985-64669570:+|1.00816676553668|0.0378728111015322|4.73|151.0|2|1|sense REV__L1ME4b_dup17341|chr15:64668985-64669570:+|1.00816676553668|0.0378728111015322|4.73|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.7947387695312 2 580.292756 1158.57096 0.52562 0.00030501 0.17989 0.00010439 0.70551 0.0004094 580.2930212589845 62.986 0.73193 66.46 66.103 66.835 3.4738 90 54 2 0 0 0 0.23293 1 14104 14104 18.146 1.0335 1 202170 + 32634 28268 20783 20794 37501 37501 -0.0019827438529773644 QEKRPRWK 8 Unmodified _QEKRPRWK_ 0 0 0 Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|99|1|anti-sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|99|1|anti-sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|99|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 563.7398681640625 2 564.325257 1126.63596 -0.10718 -6.0482E-05 2.3097 0.0013034 2.2026 0.001243 564.326397412706 18.612 0.24198 22.192 22.044 22.286 3.5806 37 28 2 0 0 0 0.72333 1 1605 1605 0.6015 0 1 20533 32635 518 20784 20795 37502 37502 0.07770764931228769 QEKRPRWK 8 Unmodified _QEKRPRWK_ 0 0 0 Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|99|1|anti-sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|99|1|anti-sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|99|1|anti-sense MSMS UPN47_class_I_Rep_2 3 564.3264770507812 2 564.325257 1126.63596 NaN NaN NaN NaN NaN NaN NaN 19.255 1 22.651 22.151 23.151 3.3963 0 0 0 0.40753 1 1781 1781 0.6015 0.076735 1 32636 518 20784 20795 37503 37503 0.07770764931228769 QEKTKRKT 8 Unmodified _QEKTKRKT_ 0 0 0 REV__nc|ENSG00000290292|Q8IX15|HOMEZ REV__nc|ENSG00000290292|Q8IX15|HOMEZ MULTI-MSMS UPN48_class_I_Rep_1 5 509.8037414550781 2 509.803823 1017.59309 0.25622 0.00013062 -0.098641 -5.0288E-05 0.15758 8.0336E-05 509.8036790257037 77.677 0.31535 81.199 81.029 81.344 3.5221 41 28 2 0 0 0 0.82752 1 18526 18526 0.6015 0 1 158570 + 32637 32130 20785 20796 37504 37504 0.08499950083125896 QELEQYQL 8 Unmodified _QELEQYQL_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000546823.1_1_12:90313320-90313449:-|nuORF;ENST00000484090.1_1_21:40684667-40685223:-|nuORF;nc|ENSG00000185658|Q9NSI6-4|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.2606201171875 2 525.758746 1049.50294 0.34898 0.00018348 -0.23249 -0.00012224 0.11648 6.1241E-05 525.7585354906806 60.234 0.45124 63.632 63.444 63.895 3.3982 70 40 2 0 0 0 0.82752 2 14074 14074;14079 9.3831 0 1 98927 32638 16777 20786 20797 37505;37506 37505 -0.019831440359666885 QELEQYQL 8 Unmodified _QELEQYQL_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000546823.1_1_12:90313320-90313449:-|nuORF;ENST00000484090.1_1_21:40684667-40685223:-|nuORF;nc|ENSG00000185658|Q9NSI6-4|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS UPN47_class_I_Rep_2 3 525.7588500976562 2 525.758746 1049.50294 0.14269 7.502E-05 0.14513 7.6302E-05 0.28782 0.00015132 525.7586347968041 60.513 0.54239 63.779 63.476 64.019 3.2654 62 45 2 0 0 0 0.82752 2 14163 14163;14199 9.3831 0.9089 1 106170 32639 16777 20786 20797 37507;37508 37507 -0.019831440359666885 QELEQYQL 8 Unmodified _QELEQYQL_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000546823.1_1_12:90313320-90313449:-|nuORF;ENST00000484090.1_1_21:40684667-40685223:-|nuORF;nc|ENSG00000185658|Q9NSI6-4|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7595825195312 2 525.758746 1049.50294 0.28035 0.0001474 -0.1195 -6.2829E-05 0.16085 8.4568E-05 525.758535536802 60.562 0.47945 63.727 63.49 63.969 3.1651 61 39 2 0 0 0 0.82752 3 14173 14173;14224;14262 13.906 0.9089 1 96022 32640 16777 20786 20797 37509;37510;37511 37509 -0.019831440359666885 QELGKGPT 8 Unmodified _QELGKGPT_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS UPN48_class_I_Rep_1 5 415.223876953125 2 415.224342 828.434132 -0.10333 -4.2903E-05 -1.0708 -0.00044463 -1.1741 -0.00048753 415.22379947997837 75.822 0.43636 79.321 79.114 79.55 3.4996 54 45 2 0 0 0 0.82752 1 17990 17990 2.5775 0 1 92878 32641 2990 20787 20798 37512 37512 0.013052364549935191 QELGKGPT 8 Unmodified _QELGKGPT_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MATCH UPN46_class_I_Rep_3 1 2 415.224342 828.434132 0.060969 2.5316E-05 -1.0509 -0.00043634 -0.98988 -0.00041102 415.2238277417926 79.394 0.15158 79.394 79.344 79.496 0 0.03061 -0.00013299 NaN 2.5775 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 59777 32642 2990 20787 20798 0.013052364549935191 QELGKGPT 8 Unmodified _QELGKGPT_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 415.224342 828.434132 -0.57067 -0.00023696 -0.71929 -0.00029867 -1.29 -0.00053562 415.224015238843 76.054 0.44875 79.376 79.14 79.589 3.3216 0.012025 0.00014236 NaN 2.5775 64 46 2 NaN NaN NaN NaN 0 NaN NaN 0 51847 32643 2990 20787 20798 0.013052364549935191 QELIQAEI 8 Unmodified _QELIQAEI_ 0 0 0 ENSG00000164022|ENST00000672341|AIMP1;nc|ENSG00000164022|Q12904-2|AIMP1 ENSG00000164022|ENST00000672341|AIMP1 ENSG00000164022|ENST00000672341|AIMP1 MULTI-MSMS UPN48_class_I_Rep_3 7 472.25811767578125 2 472.258382 942.502212 0.24546 0.00011592 0.054751 2.5857E-05 0.30021 0.00014178 472.2581767515906 65.833 0.40718 69.341 69.06 69.467 3.5077 31 25 2 0 0 0 0.82752 1 14856 14856 6.2058 0 1 78736 32644 4067 20788 20799 37513 37513 0.028660613149895653 QELKWHLV 8 Unmodified _QELKWHLV_ 0 0 0 REV__ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|1|intron REV__ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|1|intron MSMS UPN47_class_I_Rep_1 2 526.796875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 22.142 1 25.817 25.317 26.317 3.6749 0 0 0 0.40738 1 2523 2523 0.79363 0 1 + 32645 20088 20789 20800 37514 37514 0.05773753059793307 QELNTWESL 9 Unmodified _QELNTWESL_ 0 0 0 HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|136|2|anti-sense;HERVK22-int_dup356|chr13:102668346-102671524:-|2.942181132773123|0.3922627925784653|2.91|151.0|172|2|anti-sense;HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|151|2|anti-sense HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|136|2|anti-sense HERVK22-int_dup6|chr1:156185008-156187410:-|1.799235639719356|0.2947043136527955|2.61|151.0|136|2|anti-sense MSMS UPN46_class_I_Rep_3 1 560.2718505859375 2 560.269478 1118.5244 NaN NaN NaN NaN NaN NaN NaN 92.579 1 92.579 92.079 93.079 0 0 0 0 0.38073 1 22409 22409 5.2969 0 1 32646 8287 20790 20801 37515 37515 -0.03011759007222281 QELQLVQL 8 Unmodified _QELQLVQL_ 0 0 0 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 MSMS UPN47_class_I_Rep_3 4 485.7814025878906 2 485.782025 969.549496 NaN NaN NaN NaN NaN NaN NaN 78.422 1 81.704 81.204 82.204 3.2816 0 0 0 0.40472 1 19557 19557 4.3292 0 1 32647 4628 20791 20802 37516 37516 0.0635034058598194 QELYQLQLE 9 Unmodified _QELYQLQLE_ 0 0 0 REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS UPN48_class_I_Rep_3 7 582.2999877929688 2 582.300778 1162.587 0.40469 0.00023565 -0.072789 -4.2385E-05 0.3319 0.00019327 582.300419711162 48.557 0.67067 52.191 51.821 52.492 3.6339 89 51 3 0 0 0 0.15661 1 9620 9620 24.882 0 1 152050 + 32648 18229 20792 20803 37517 37517 0.012213870609457445 QEMAPWVTDAP 11 Unmodified _QEMAPWVTDAP_ 0 0 0 REV__nc|ENSG00000148396|O15027-2|SEC16A REV__nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS UPN47_class_I_Rep_3 4 623.2870483398438 2 622.784438 1243.55432 0.52263 0.00032549 -0.52405 -0.00032637 -0.001416 -8.8189E-07 622.7841647622391 52.357 0.43404 55.562 55.29 55.724 3.2055 52 34 2 0 0 0 0.62748 1 11713 11713 4.5289 0.58447 1 118130 + 32649 19588 20793 20804 37518 37518 -0.05771143333549844 QEMRKPRW 8 Unmodified _QEMRKPRW_ 0 0 0 nc|ENSG00000137726|Q9H0Q3-2|FXYD6 nc|ENSG00000137726|Q9H0Q3-2|FXYD6 nc|ENSG00000137726|Q9H0Q3-2|FXYD6 MSMS UPN47_class_I_Rep_2 3 565.7998657226562 2 565.798017 1129.58148 NaN NaN NaN NaN NaN NaN NaN 13.66 1 17.048 16.548 17.548 3.388 0 0 0 0.40746 1 380 380 0.69038 0 1 32650 16692 20794 20805 37519 37519 0.02187429788159534 QEMTNGKSR 9 Unmodified _QEMTNGKSR_ 0 0 0 REV__L1MC1_dup538|chr1:116525953-116527849:-|4.705367530376088|0.462508509648441|3.35|151.0|19|1|sense REV__L1MC1_dup538|chr1:116525953-116527849:-|4.705367530376088|0.462508509648441|3.35|151.0|19|1|sense MSMS UPN46_class_I_Rep_3 1 525.7554931640625 2 525.753472 1049.49239 NaN NaN NaN NaN NaN NaN NaN 16.326 1 16.326 15.826 16.826 0 0 0 0 0.39036 1 1100 1100 2.9952 0.10602 1 + 32651 26559 20795 20806 37520 37520 -0.030374499620165807 QENALIAAI 9 Unmodified _QENALIAAI_ 0 0 0 nc|ENSG00000186231|Q96NJ5-3|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;ENSG00000186231|ENST00000369261|KLHL32 nc|ENSG00000186231|Q96NJ5-3|KLHL32 nc|ENSG00000186231|Q96NJ5-3|KLHL32 MULTI-MSMS UPN47_class_I_Rep_2 3 471.7659912109375 2 471.766374 941.518196 0.045336 2.1388E-05 -0.11206 -5.2864E-05 -0.066719 -3.1476E-05 471.76617212428965 70.033 0.75844 73.309 72.956 73.715 3.2761 159 68 3 0 0 0 0.30034 1 16966 16966 13.906 0 1 430360 32652 5149 20796 20807 37521 37521 0.04509767551905952 QENEMYYH 8 Unmodified _QENEMYYH_ 0 0 0 REV__L1PA6_dup924|chr3:17693114-17697953:+|4.713724430117208|0.0582898906625956|6.34|151.0|20|1|sense REV__L1PA6_dup924|chr3:17693114-17697953:+|4.713724430117208|0.0582898906625956|6.34|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.2190551757812 2 557.218931 1112.42331 0.45733 0.00025484 0.32461 0.00018088 0.78195 0.00043572 557.2190533711548 75.311 0.58 78.624 78.353 78.933 3.3127 110 56 3 0 0 0 0.82752 1 18599 18599 0.79363 0 1 270450 + 32653 29959 20797 20808 37522 37522 -0.12840533981579938 QENQDTSSRRF 11 Unmodified _QENQDTSSRRF_ 0 0 0 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant;ENSG00000112343|ENST00000357085|TRIM38 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 456.5477294921875 3 456.548128 1366.62255 -0.42634 -0.00019465 -0.17902 -8.173E-05 -0.60536 -0.00027638 456.547984457358 15.21 0.39147 18.707 18.574 18.965 3.4968 106 47 3 0 0 0 0.65118 2 749 749;779 3.134 2.4363 1 56904 32654 2011 20798 20809 37523;37524 37523 -0.046091824293625905 QENQDTSSRRF 11 Unmodified _QENQDTSSRRF_ 0 0 0 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant;ENSG00000112343|ENST00000357085|TRIM38 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 456.5478210449219 3 456.548128 1366.62255 -0.48427 -0.00022109 -0.29369 -0.00013408 -0.77796 -0.00035518 456.547944231982 15.348 0.50392 18.734 18.614 19.118 3.3864 117 57 3 0 0 0 0.66092 3 781 781;808;841 2.2527 2.2527 1 78644 32655 2011 20798 20809 37525;37526;37527 37525 -0.046091824293625905 QENQDTSSRRF 11 Unmodified _QENQDTSSRRF_ 0 0 0 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant;ENSG00000112343|ENST00000357085|TRIM38 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 456.54779052734375 3 456.548128 1366.62255 -1.0201 -0.00046574 0.30656 0.00013996 -0.71356 -0.00032577 456.54822250094105 15.484 0.44506 18.85 18.67 19.115 3.3659 104 49 3 0 0 0 0.66761 3 775 775;805;842 1.6479 1.0211 1 58194 32656 2011 20798 20809 37528;37529;37530 37528 -0.046091824293625905 QENQKEYF 8 Unmodified _QENQKEYF_ 0 0 0 nc|ENSG00000197050|Q8TAQ5-2|ZNF420;ENSG00000197050|ENST00000337995|ZNF420 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 MSMS UPN47_class_I_Rep_2 3 543.2623901367188 2 543.248546 1084.48254 NaN NaN NaN NaN NaN NaN NaN 63.599 1 66.855 66.355 67.355 3.2556 0 0 0 0.40364 1 15099 15099 5.7604 1.0044 1 32657 5344 20799 20810 37531 37531 -0.05632314695776586 QENTKWVVD 9 Unmodified _QENTKWVVD_ 0 0 0 HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|43|1|sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|43|1|sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|43|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.77734375 2 559.77747 1117.54039 0.22462 0.00012574 -0.087143 -4.8781E-05 0.13747 7.6955E-05 559.7773358800715 45.053 1.6121 48.297 47.814 49.426 3.2441 250 99 4 0 0 0 0.42249 1 9489 9489 6.7232 0 1 1214400 32658 8354 20800 20811 37532 37532 -0.013680527703400003 QERDFSSY 8 Unmodified _QERDFSSY_ 0 0 0 L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|13|3|sense L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|13|3|sense L1ME4b_dup18123|chr16:24948054-24948490:+|1.6197109542627772|0.2795079724082732|2.53|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.2255859375 2 516.225071 1030.43559 0.2537 0.00013097 0.5163 0.00026653 0.77 0.0003975 516.2254866804219 46.435 1.2879 50.185 49.704 50.992 3.7494 233 90 4 0 0 0 0.82752 1 9201 9201 9.3474 0 1 1919000 32659 12904 20801 20812 37533 37533 -0.07841174246891569 QERQRVPGPP 10 Unmodified _QERQRVPGPP_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MSMS UPN48_class_I_Rep_2 6 582.7861328125 2 582.317628 1162.6207 NaN NaN NaN NaN NaN NaN NaN 65.754 1 69.24 68.74 69.74 3.4866 0 0 0 0.53105 1 14969 14969 1.6526 0.32309 1 + 32660 19470 20802 20813 37534 37534 0.04589853343372852 QERSRILRVRQ 11 Unmodified _QERSRILRVRQ_ 0 0 0 REV__MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|104|3|anti-sense REV__MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|104|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.9545593261719 3 480.955052 1439.84333 -0.37409 -0.00017992 -0.41818 -0.00020112 -0.79226 -0.00038104 480.95480377951407 15.004 0.72175 18.479 18.303 19.025 3.475 222 84 4 0 0 0 0.68478 1 675 675 0.094841 0 1 205820 + 32661 31530 20803 20814 37535 37535 0.14099927408597068 QESNSFVFCT 10 Unmodified _QESNSFVFCT_ 0 0 0 REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2476806640625 2 581.247689 1160.48082 0.36805 0.00021393 0.19663 0.00011429 0.56468 0.00032822 581.2475065991733 57.301 0.58689 60.738 60.459 61.046 3.437 97 56 2 0 0 0 0.55148 1 13141 13141 5.2969 5.2969 1 228000 + 32662 24743 20804 20815 37536 37536 -0.09299691776004693 QESNSFVFCT 10 Unmodified _QESNSFVFCT_ 0 0 0 REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.2477416992188 2 581.247689 1160.48082 0.36055 0.00020957 0.023878 1.3879E-05 0.38442 0.00022345 581.2475149974682 57.56 0.71696 60.728 60.509 61.226 3.1681 102 56 2 0 0 0 0.52562 1 13373 13373 8.7454 0.83525 1 239630 + 32663 24743 20804 20815 37537 37537 -0.09299691776004693 QESNSFVFCT 10 Unmodified _QESNSFVFCT_ 0 0 0 REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 581.247689 1160.48082 0.36805 0.00021393 0.19663 0.00011429 0.56468 0.00032822 581.2475065991733 57.301 0.58689 60.738 60.459 61.046 3.437 -0.0093342 0.0001352 NaN 8.7454 97 56 2 NaN NaN NaN NaN 0 NaN NaN 0 228000 + 32664 24743 20804 20815 -0.09299691776004693 QESNSFVFCT 10 Unmodified _QESNSFVFCT_ 0 0 0 REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense REV__L1M8_dup303|chr3:73006490-73007085:-|1.1941142110537162|0.0095173717914245|6.97|151.0|23|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 581.247689 1160.48082 0.51912 0.00030174 0.00075686 4.3992E-07 0.51988 0.00030218 581.2475017189067 57.484 0.5974 60.775 60.499 61.097 3.2912 0.028327 -9.2502E-05 NaN 8.7454 94 52 3 NaN NaN NaN NaN 0 NaN NaN 0 200790 + 32665 24743 20804 20815 -0.09299691776004693 QETLDILLQ 9 Unmodified _QETLDILLQ_ 0 0 0 REV__ENSG00000100109|ENST00000407690|TFIP11 REV__ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN47_class_I_Rep_1 2 536.8163452148438 2 536.797872 1071.58119 0.41136 0.00022082 -0.30753 -0.00016508 0.10383 5.5735E-05 536.7977215794218 60.279 0.29943 63.677 63.474 63.773 3.3982 36 26 2 0 0 0 0.037922 1 14051 14051 53.833 8.1332 1 85666 + 32666 18088 20805 20816 37538 37538 0.04826288549293167 QETLDILLQ 9 Unmodified _QETLDILLQ_ 0 0 0 REV__ENSG00000100109|ENST00000407690|TFIP11 REV__ENSG00000100109|ENST00000407690|TFIP11 MULTI-SECPEP UPN47_class_I_Rep_1 2 536.8162841796875 2 536.797872 1071.58119 0.41136 0.00022082 -0.30753 -0.00016508 0.10383 5.5735E-05 536.7977215794218 60.279 0.29943 63.677 63.474 63.773 3.3982 36 26 2 0 0 0 0.044386 1 14014 14014 45.7 7.524 1 85666 + 32667 18088 20805 20816 37539 37539 0.04826288549293167 QETLDILLQ 9 Unmodified _QETLDILLQ_ 0 0 0 REV__ENSG00000100109|ENST00000407690|TFIP11 REV__ENSG00000100109|ENST00000407690|TFIP11 MSMS UPN47_class_I_Rep_3 4 536.8163452148438 2 536.797872 1071.58119 NaN NaN NaN NaN NaN NaN NaN 60.73 1 63.895 63.395 64.395 3.1651 0 0 0 0.070158 1 14279 14279 31.268 6.2774 1 + 32668 18088 20805 20816 37540 37540 0.04826288549293167 QETLDILLQ 9 Unmodified _QETLDILLQ_ 0 0 0 REV__ENSG00000100109|ENST00000407690|TFIP11 REV__ENSG00000100109|ENST00000407690|TFIP11 MULTI-MATCH UPN47_class_I_Rep_3 4 2 536.797872 1071.58119 0.35388 0.00018996 2.3499 0.0012614 2.7038 0.0014514 536.7993128232897 60.859 0.064667 64.024 63.98 64.045 3.1651 0.25081 0.0022609 NaN 53.833 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 80972 + 32669 18088 20805 20816 0.04826288549293167 QETQLSQR 8 Unmodified _QETQLSQR_ 0 0 0 REV__ENSG00000189127|ENST00000338682|ANKRD34B REV__ENSG00000189127|ENST00000338682|ANKRD34B MSMS UPN48_class_I_Rep_1 5 495.254638671875 2 495.254163 988.493772 NaN NaN NaN NaN NaN NaN NaN 19.424 1 22.962 22.462 23.462 3.5378 0 0 0 0.3978 1 1471 1471 8.7454 0.58988 1 + 32670 20999 20806 20817 37541 37541 -0.0009349260161570783 QETRIKTF 8 Unmodified _QETRIKTF_ 0 0 0 REV__ENST00000537726.5_1_15:80445384-80454681:+|nuORF REV__ENST00000537726.5_1_15:80445384-80454681:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 511.785400390625 2 511.785099 1021.55564 -0.20959 -0.00010726 0.26724 0.00013677 0.057655 2.9507E-05 511.7852530777206 28.149 0.65355 31.916 31.625 32.279 3.7662 68 51 2 0 0 0 0.82752 1 4393 4393 1.8442 0.19162 1 99770 + 32671 22900 20807 20818 37542 37542 0.045728588175165896 QEVDFFQRY 9 Unmodified _QEVDFFQRY_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS UPN47_class_I_Rep_1 2 616.2904052734375 2 616.290745 1230.56694 0.39714 0.00024475 -0.44841 -0.00027635 -0.051274 -3.1599E-05 616.2903865064344 56.203 0.62868 59.681 59.317 59.946 3.4785 44 33 2 0 0 0 0.20317 3 12813 12761;12813;12863 20.415 15.659 1 116590 32672 3534 20808 20819 37543;37544;37545 37544 -0.03912363878976066 QEVDFFQRY 9 Unmodified _QEVDFFQRY_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS UPN47_class_I_Rep_2 3 616.2921142578125 2 616.290745 1230.56694 0.51834 0.00031945 -0.18964 -0.00011687 0.3287 0.00020258 616.2904002703698 56.402 0.53173 59.703 59.453 59.984 3.3009 56 31 3 0 0 0 0.32682 4 12933 12882;12933;12939;12988 12.241 9.5055 1 115200 32673 3534 20808 20819 37546;37547;37548;37549 37547 -0.03912363878976066 QEVDFFQRY 9 Unmodified _QEVDFFQRY_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS UPN47_class_I_Rep_3 4 616.28955078125 2 616.290745 1230.56694 0.39741 0.00024492 -0.20332 -0.00012531 0.19409 0.00011962 616.2905425680217 56.639 0.58029 59.811 59.448 60.028 3.1721 53 34 2 0 0 0 0.32682 5 12965 12946;12965;13006;13053;13071 12.241 9.435 1 104590 32674 3534 20808 20819 37550;37551;37552;37553;37554 37551 -0.03912363878976066 QEVETEQY 8 Unmodified _QEVETEQY_ 0 0 0 nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 nc|ENSG00000138767|Q96LI5-2|CNOT6L nc|ENSG00000138767|Q96LI5-2|CNOT6L MSMS UPN47_class_I_Rep_3 4 513.2245483398438 2 513.224736 1024.43492 NaN NaN NaN NaN NaN NaN NaN 70.236 1 73.447 72.947 73.947 3.2113 0 0 0 0.38547 1 17170 17170 13.508 0 1 32675 2037 20809 20820 37555 37555 -0.07632013686611572 QEVGYTIRF 9 Unmodified _QEVGYTIRF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN47_class_I_Rep_1 2 556.7896118164062 2 556.790381 1111.56621 0.34763 0.00019356 -0.35617 -0.00019831 -0.0085462 -4.7584E-06 556.7900965614417 54.344 0.64434 57.846 57.647 58.291 3.5014 62 33 3 0 0 0 0.24411 4 12268 12228;12268;12274;12330 17.443 8.8494 1 98904 32676 1037 20810 20821 37556;37557;37558;37559 37557 0.01488841471973501 QEVGYTIRF 9 Unmodified _QEVGYTIRF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN47_class_I_Rep_2 3 556.7896118164062 2 556.790381 1111.56621 0.51734 0.00028805 -0.76014 -0.00042324 -0.24281 -0.00013519 556.789836268823 54.67 0.63079 57.989 57.68 58.311 3.3187 52 30 2 0 0 0 0.36258 3 12370 12330;12370;12417 10.151 4.8537 1 104640 32677 1037 20810 20821 37560;37561;37562 37561 0.01488841471973501 QEVGYTIRF 9 Unmodified _QEVGYTIRF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN47_class_I_Rep_3 4 556.789306640625 2 556.790381 1111.56621 0.43948 0.0002447 -0.80682 -0.00044923 -0.36734 -0.00020453 556.7897354572438 54.831 0.65268 58.016 57.727 58.38 3.1856 71 37 3 0 0 0 0.22932 3 12463 12422;12463;12512 18.373 8.2992 1 88366 32678 1037 20810 20821 37563;37564;37565 37564 0.01488841471973501 QEVILSRWV 9 Unmodified _QEVILSRWV_ 0 0 0 nc|ENSG00000154743|Q8NCE0-4|TSEN2;nc|ENSG00000154743|Q8NCE0-3|TSEN2;nc|ENSG00000154743|Q8NCE0-2|TSEN2;ENSG00000154743|ENST00000284995|TSEN2 nc|ENSG00000154743|Q8NCE0-4|TSEN2 nc|ENSG00000154743|Q8NCE0-4|TSEN2 MULTI-MSMS UPN48_class_I_Rep_2 6 565.3213500976562 2 565.321848 1128.62914 0.48985 0.00027692 -1.9674 -0.0011122 -1.4776 -0.00083531 565.3203981829369 107.82 0.075897 111.5 111.47 111.55 3.6783 8 5 2 0 0 0 0.42249 1 25526 25526 6.7232 0.99131 1 1350900 32679 3681 20811 20822 37566 37566 0.06997407259973443 QEWKIKYY 8 Unmodified _QEWKIKYY_ 0 0 0 L1PB2_dup1290|chr8:25349180-25349922:+|1.550534507462122|0.0246252484339946|5.98|150.0|24|3|sense L1PB2_dup1290|chr8:25349180-25349922:+|1.550534507462122|0.0246252484339946|5.98|150.0|24|3|sense L1PB2_dup1290|chr8:25349180-25349922:+|1.550534507462122|0.0246252484339946|5.98|150.0|24|3|sense MSMS UPN47_class_I_Rep_3 4 579.2945556640625 2 579.303124 1156.5917 NaN NaN NaN NaN NaN NaN NaN 55.773 1 58.951 58.451 59.451 3.1779 0 0 0 0.36705 1 12772 12772 18.135 0 1 32680 15219 20812 20823 37567 37567 0.0196631599437751 QEWPIREGAGE 11 Unmodified _QEWPIREGAGE_ 0 0 0 REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF MSMS UPN48_class_I_Rep_2 6 636.3016357421875 2 636.304384 1270.59421 NaN NaN NaN NaN NaN NaN NaN 112.24 1 115.91 115.41 116.41 3.6648 0 0 0 0.38417 1 26730 26730 2.7352 0.43246 1 + 32681 21953 20813 20824 37568 37568 -0.03025880338600473 QEYEFEKQ 8 Unmodified _QEYEFEKQ_ 0 0 0 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 MSMS UPN47_class_I_Rep_2 3 550.74853515625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 113.33 1 116.85 116.35 117.35 3.5171 0 0 0 0.40625 1 27563 27563 2.3027 0 1 32682 4475 20814 20825 37569 37569 -0.06355734415615188 QEYEFEKQ 8 Unmodified _QEYEFEKQ_ 0 0 0 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 MSMS UPN47_class_I_Rep_3 4 550.749267578125 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 24.482 1 27.832 27.332 28.332 3.3509 0 0 0 0.40404 1 3293 3293 5.2307 0 1 32683 4475 20814 20825 37570 37570 -0.06355734415615188 QEYEFEKQ 8 Unmodified _QEYEFEKQ_ 0 0 0 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 MSMS UPN48_class_I_Rep_2 6 550.7491455078125 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 24.418 1 28.058 27.558 28.558 3.6397 0 0 0 0.40625 1 2830 2830 2.3027 0 1 32684 4475 20814 20825 37571 37571 -0.06355734415615188 QEYPDLIHI 9 Unmodified _QEYPDLIHI_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MSMS UPN48_class_I_Rep_2 6 564.2905883789062 2 564.290214 1126.56587 NaN NaN NaN NaN NaN NaN NaN 63.67 1 67.144 66.644 67.644 3.4743 0 0 0 0.11494 1 14335 14335 21.747 4.8044 1 32685 5101 20815 20826 37572 37572 0.007654217520894235 QFCKMLDF 8 Unmodified _QFCKMLDF_ 0 0 0 REV__ENSG00000177932|ENST00000315475|ZNF354C REV__ENSG00000177932|ENST00000315475|ZNF354C MSMS UPN47_class_I_Rep_3 4 516.2384033203125 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 115.78 1 119.24 118.74 119.74 3.462 0 0 0 0.40604 1 28480 28480 2.5775 0 1 + 32686 20632 20816 20827 37573 37573 -0.05240319600648036 QFCKMLDF 8 Unmodified _QFCKMLDF_ 0 0 0 REV__ENSG00000177932|ENST00000315475|ZNF354C REV__ENSG00000177932|ENST00000315475|ZNF354C MSMS UPN48_class_I_Rep_1 5 516.238037109375 2 516.238081 1030.46161 NaN NaN NaN NaN NaN NaN NaN 27.419 1 30.982 30.482 31.482 3.5629 0 0 0 0.40746 1 3527 3527 0.69038 0 1 + 32687 20632 20816 20827 37574 37574 -0.05240319600648036 QFFFFWYI 8 Unmodified _QFFFFWYI_ 0 0 0 L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|49|1|anti-sense L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|49|1|anti-sense L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_2 3 599.2933959960938 2 599.292028 1196.5695 NaN NaN NaN NaN NaN NaN NaN 61.294 1 64.559 64.059 65.059 3.2654 0 0 0 0.40746 1 14398 14398 0.69038 0 1 32688 10549 20817 20828 37575 37575 -0.020918636833812343 QFFIACLW 8 Unmodified _QFFIACLW_ 0 0 0 REV__L1MEf_dup256|chr1:89644449-89645690:+|3.211585478357812|0.0277454638926172|6.85|151.0|55|1|anti-sense REV__L1MEf_dup256|chr1:89644449-89645690:+|3.211585478357812|0.0277454638926172|6.85|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_1 5 514.2579345703125 2 514.257131 1026.49971 NaN NaN NaN NaN NaN NaN NaN 34.968 1 38.482 37.982 38.982 3.5144 0 0 0 0.40738 1 5660 5660 0.79363 0 1 + 32689 28622 20818 20829 37576 37576 -0.012480656236675713 QFFKKRAK 8 Unmodified _QFFKKRAK_ 0 0 0 ENST00000392557.8_1_14:105713688-105714024:-|nuORF ENST00000392557.8_1_14:105713688-105714024:-|nuORF ENST00000392557.8_1_14:105713688-105714024:-|nuORF MSMS UPN46_class_I_Rep_3 1 526.8215942382812 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 30.063 1 30.063 29.563 30.563 0 0 0 0 0.40738 1 4844 4844 0.79363 0 1 32690 6524 20819 20830 37577 37577 0.10533452050663072 QFFKKVEVI 9 Unmodified _QFFKKVEVI_ 0 0 0 REV__ENSG00000115604|ENST00000233957|IL18R1 REV__ENSG00000115604|ENST00000233957|IL18R1 MSMS UPN48_class_I_Rep_1 5 569.7562255859375 2 569.336967 1136.65938 NaN NaN NaN NaN NaN NaN NaN 24.407 1 27.972 27.472 28.472 3.5655 0 0 0 0.4007 1 2691 2691 0.52476 0 1 + 32691 18574 20820 20831 37578 37578 0.09651765925195832 QFFLRQKRRQI 11 Unmodified _QFFLRQKRRQI_ 0 0 0 L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|31|3|sense L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|31|3|sense L1ME2z_dup3399|chr9:14678407-14679406:+|1.9186136864946863|0.4165710304361011|2.2|151.0|31|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 506.8531188964844 3 507.303793 1518.88955 0.33901 0.00017198 0.82143 0.00041671 1.1604 0.00058869 507.30412955886527 108.2 0.25392 111.83 111.67 111.92 3.6355 34 24 2 0 0 0 22.551 1 26572 26572 1.3296 0.21989 1 811590 32692 12562 20821 20832 37579 37579 0.15085992310673646 QFFWDVKHE 9 Unmodified _QFFWDVKHE_ 0 0 0 REV__LTR54_dup964|chr17:15526930-15527239:+|1.2106046302277766|0.2058396630282872|2.56|149.0|19|3|anti-sense REV__LTR54_dup964|chr17:15526930-15527239:+|1.2106046302277766|0.2058396630282872|2.56|149.0|19|3|anti-sense MSMS UPN48_class_I_Rep_2 6 618.2955932617188 2 618.29583 1234.57711 NaN NaN NaN NaN NaN NaN NaN 35.707 1 39.395 38.895 39.895 3.6877 0 0 0 0.4007 1 5921 5921 0.52476 0 1 + 32693 30972 20822 20833 37580 37580 -0.030797561537610818 QFFWHLHHE 9 Unmodified _QFFWHLHHE_ 0 0 0 L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|61|1|anti-sense L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|61|1|anti-sense L1PA12_dup620|chr5:55685627-55687065:-|2.696751165033277|0.0547005298827154|5.62|151.0|61|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 640.7996215820312 2 640.801614 1279.58868 0.42672 0.00027344 -1.1806 -0.00075651 -0.75385 -0.00048307 640.8007998142459 43.249 0.63406 47.01 46.865 47.499 3.7617 67 50 2 0 0 0 0.48846 1 8083 8083 1.8442 0.19162 1 120060 32694 13723 20823 20834 37581 37581 -0.039935143397769934 QFGFYTRQWW 10 Unmodified _QFGFYTRQWW_ 0 0 0 REV__L1ME2z_dup6380|chr18:47882496-47883679:-|1.7591373950162197|0.1620612026268364|3.44|151.0|87|3|anti-sense REV__L1ME2z_dup6380|chr18:47882496-47883679:-|1.7591373950162197|0.1620612026268364|3.44|151.0|87|3|anti-sense MSMS UPN46_class_I_Rep_3 1 473.5605773925781 3 473.559528 1417.65676 NaN NaN NaN NaN NaN NaN NaN 48.658 1 48.658 48.158 49.158 0 0 0 0 0.53105 1 10157 10157 0.62683 0 1 + 32695 27935 20824 20835 37582 37582 -0.0353668947980168 QFGLARPVY 9 Unmodified _QFGLARPVY_ 0 0 0 REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|54|2|sense REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|54|2|sense MSMS UPN48_class_I_Rep_2 6 525.7911987304688 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 27.355 1 30.986 30.486 31.486 3.6311 0 0 0 0.39518 1 3613 3613 1.8442 0 1 + 32696 30047 20825 20836 37583 37583 0.04301466542756316 QFGYHIAF 8 Unmodified _QFGYHIAF_ 0 0 0 L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|67|3|anti-sense L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|67|3|anti-sense L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7421875 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 39.67 1 43.326 42.826 43.826 3.6557 0 0 0 0.36148 1 6966 6966 19.439 4.8573 1 32697 12079 20826 20837 37584 37584 -0.0206246692843024 QFHYWIFA 8 Unmodified _QFHYWIFA_ 0 0 0 L1PA8_dup6921|chr15:50032039-50032593:-|1.3971618577956435|0.0026297539390804|9.05|150.0|5|2|sense L1PA8_dup6921|chr15:50032039-50032593:-|1.3971618577956435|0.0026297539390804|9.05|150.0|5|2|sense L1PA8_dup6921|chr15:50032039-50032593:-|1.3971618577956435|0.0026297539390804|9.05|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 556.2706298828125 2 556.271627 1110.5287 NaN NaN NaN NaN NaN NaN NaN 81.561 1 84.884 84.384 85.384 3.3231 0 0 0 0.40738 1 20415 20415 0.79363 0 1 32698 14958 20827 20838 37585 37585 -0.022142050030197424 QFIAKESD 8 Unmodified _QFIAKESD_ 0 0 0 ENSG00000152779|ENST00000371790|SLC16A12 ENSG00000152779|ENST00000371790|SLC16A12 ENSG00000152779|ENST00000371790|SLC16A12 MSMS UPN47_class_I_Rep_3 4 469.24383544921875 2 469.234907 936.455261 NaN NaN NaN NaN NaN NaN NaN 29.437 1 32.761 32.261 33.261 3.3235 0 0 0 0.4044 1 4759 4759 4.756 0.42677 1 32699 3630 20828 20839 37586 37586 -0.015507982361327777 QFIHLDTI 8 Unmodified _QFIHLDTI_ 0 0 0 REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|161|1|anti-sense REV__L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|161|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.7692565917969 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 47.713 1 51.347 50.847 51.847 3.6339 0 0 0 0.37681 1 9391 9391 15.847 0 1 + 32700 25488 20829 20840 37587 37587 0.029940714145254788 QFILPNTSY 9 Unmodified _QFILPNTSY_ 0 0 0 L1MCa_dup7201|chr20:20486159-20487626:-|1.5288366921207115|0.1313600726052564|3.54|151.0|40|3|sense L1MCa_dup7201|chr20:20486159-20487626:-|1.5288366921207115|0.1313600726052564|3.54|151.0|40|3|sense L1MCa_dup7201|chr20:20486159-20487626:-|1.5288366921207115|0.1313600726052564|3.54|151.0|40|3|sense MSMS UPN48_class_I_Rep_1 5 541.7779541015625 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 37.889 1 41.394 40.894 41.894 3.5052 0 0 0 0.34878 1 6496 6496 8.1555 0 1 32701 11842 20830 20841 37588 37588 0.0069003672338112665 QFILPNTSY 9 Unmodified _QFILPNTSY_ 0 0 0 L1MCa_dup7201|chr20:20486159-20487626:-|1.5288366921207115|0.1313600726052564|3.54|151.0|40|3|sense L1MCa_dup7201|chr20:20486159-20487626:-|1.5288366921207115|0.1313600726052564|3.54|151.0|40|3|sense L1MCa_dup7201|chr20:20486159-20487626:-|1.5288366921207115|0.1313600726052564|3.54|151.0|40|3|sense MSMS UPN48_class_I_Rep_1 5 541.778076171875 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 38.037 1 41.542 41.042 42.042 3.5052 0 0 0 0.34878 1 6538 6538 8.1555 0 1 32702 11842 20830 20841 37589 37589 0.0069003672338112665 QFKASTTSII 10 Unmodified _QFKASTTSII_ 0 0 0 REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|108|3|sense REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|108|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 548.7384643554688 2 548.305864 1094.59717 -0.23253 -0.0001275 0.48809 0.00026762 0.25556 0.00014013 548.3059758342333 27.547 0.59757 30.889 30.666 31.263 3.3422 57 49 2 0 0 0 0.84575 1 4215 4215 1.3295 0.5359 1 47342 + 32703 29253 20831 20842 37590 37590 0.05365994786188821 QFKLNRQR 8 Unmodified _QFKLNRQR_ 0 0 0 REV__ENSG00000088205|ENST00000263239|DDX18 REV__ENSG00000088205|ENST00000263239|DDX18 MULTI-MSMS UPN46_class_I_Rep_3 1 545.8187255859375 2 545.317432 1088.62031 0.38215 0.00020839 -1.1114 -0.00060607 -0.72925 -0.00039768 545.3166879591903 87.994 0.16746 87.994 87.892 88.06 0 32 17 3 0 0 0 0.82752 1 21103 21103 4.756 4.756 1 175080 + 32704 17985 20832 20843 37591 37591 0.07954478414171717 QFKQFKIAKT 10 Unmodified _QFKQFKIAKT_ 0 0 0 ENST00000581440.5_1_17:25628883-25630452:+|nuORF;ENST00000581089.1_1_17:25621212-25630452:+|nuORF;ENST00000427287.6_1_17:25621222-25630452:+|nuORF ENST00000581440.5_1_17:25628883-25630452:+|nuORF ENST00000581440.5_1_17:25628883-25630452:+|nuORF MSMS UPN48_class_I_Rep_3 7 619.869140625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 87.162 1 90.953 90.453 91.453 3.7905 0 0 0 0.53105 1 20677 20677 1.4819 0.28856 1 32705 6709 20833 20844 37592 37592 0.10894242219501393 QFLDRSGIF 9 Unmodified _QFLDRSGIF_ 0 0 0 LTR48B_dup359|chr5:76923834-76924449:+|1.2637681584579643|0.0011401506734291|10.11|148.0|32|1|anti-sense LTR48B_dup359|chr5:76923834-76924449:+|1.2637681584579643|0.0011401506734291|10.11|148.0|32|1|anti-sense LTR48B_dup359|chr5:76923834-76924449:+|1.2637681584579643|0.0011401506734291|10.11|148.0|32|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.784912109375 2 541.785099 1081.55564 0.38168 0.00020679 0.16305 8.834E-05 0.54474 0.00029513 541.7850163177087 53.31 0.79746 56.894 56.482 57.28 3.5836 130 55 3 0 0 0 0.37599 1 11168 11168 9.3831 0 1 326670 32706 15649 20834 20845 37593 37593 0.01812858817538654 QFLHRKMQ 8 Unmodified _QFLHRKMQ_ 0 0 0 REV__L1M4b_dup1878|chr7:155661708-155663155:-|1.1280731086370028|0.0201112805761352|5.81|151.0|31|3|sense REV__L1M4b_dup1878|chr7:155661708-155663155:-|1.1280731086370028|0.0201112805761352|5.81|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 544.2952270507812 2 544.295111 1086.57567 NaN NaN NaN NaN NaN NaN NaN 35.897 1 39.585 39.085 40.085 3.6877 0 0 0 0.40746 1 5977 5977 0.69038 0 1 + 32707 24531 20835 20846 37594 37594 0.035843312764882285 QFLIKLNRIT 10 Unmodified _QFLIKLNRIT_ 0 0 0 L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 623.3885498046875 2 623.387522 1244.76049 0.51196 0.00031915 0.17608 0.00010977 0.68804 0.00042892 623.3874693658274 109.07 0.1846 112.61 112.58 112.76 3.536 34 22 2 0 0 0 0.56078 1 26805 26805 3.2813 0 1 3429600 32708 12264 20836 20847 37595 37595 0.14790217627887614 QFLIKLNRIT 10 Unmodified _QFLIKLNRIT_ 0 0 0 L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 623.3851928710938 2 623.387522 1244.76049 0.42631 0.00026576 -0.1378 -8.5904E-05 0.28851 0.00017985 623.3873884249238 109.2 0.12457 112.84 112.75 112.87 3.6321 26 14 2 0 0 0 0.56078 2 26483 26483;26493 3.2813 0 1 1261000 32709 12264 20836 20847 37596;37597 37596 0.14790217627887614 QFLIKLNRIT 10 Unmodified _QFLIKLNRIT_ 0 0 0 L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 623.3880615234375 2 623.387522 1244.76049 0.59248 0.00036935 -0.052886 -3.2969E-05 0.5396 0.00033638 623.3872867781021 109.25 0.13692 112.92 112.84 112.98 3.6751 26 19 2 0 0 0 0.56078 1 25939 25939 3.2813 0.28607 1 1288200 32710 12264 20836 20847 37598 37598 0.14790217627887614 QFLIKLNRIT 10 Unmodified _QFLIKLNRIT_ 0 0 0 L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense L1ME1_dup18329|chrX:111703393-111704071:-|2.6264680447925906|0.1703682973004333|3.95|151.0|16|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 623.387522 1244.76049 0.55207 0.00034415 -0.50701 -0.00031606 0.045061 2.809E-05 623.3870466535341 108.98 0.041298 112.58 112.55 112.59 3.6046 -0.15438 -0.00054789 NaN 3.2813 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 9235200 32711 12264 20836 20847 0.14790217627887614 QFLKRNKV 8 Unmodified _QFLKRNKV_ 0 0 0 L1ME1_dup21295|chr11:77012442-77014015:+|1.6602957769782487|0.1566280270982397|3.41|151.0|8|1|sense L1ME1_dup21295|chr11:77012442-77014015:+|1.6602957769782487|0.1566280270982397|3.41|151.0|8|1|sense L1ME1_dup21295|chr11:77012442-77014015:+|1.6602957769782487|0.1566280270982397|3.41|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 516.8197021484375 2 516.819276 1031.624 NaN NaN NaN NaN NaN NaN NaN 15.621 1 19.008 18.508 19.508 3.3864 0 0 0 0.40746 1 857 857 0.69038 0 1 32712 12297 20837 20848 37599 37599 0.10945148188034182 QFLSIQCLINA 11 Unmodified _QFLSIQCLINA_ 0 0 0 REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF MSMS UPN48_class_I_Rep_3 7 625.3361206054688 2 625.334098 1248.65364 NaN NaN NaN NaN NaN NaN NaN 107.22 1 110.91 110.41 111.41 3.6899 0 0 0 0.37149 1 25272 25272 7.609 1.8771 1 + 32713 22423 20838 20849 37600 37600 0.039262993512011235 QFNSIDSSYH 10 Unmodified _QFNSIDSSYH_ 0 0 0 L1PREC2_dup5649|chr11:74885279-74887435:+|1.899912604020215|0.1673329509953049|3.51|151.0|74|1|anti-sense L1PREC2_dup5649|chr11:74885279-74887435:+|1.899912604020215|0.1673329509953049|3.51|151.0|74|1|anti-sense L1PREC2_dup5649|chr11:74885279-74887435:+|1.899912604020215|0.1673329509953049|3.51|151.0|74|1|anti-sense MSMS UPN48_class_I_Rep_3 7 599.262939453125 2 599.262185 1196.50982 NaN NaN NaN NaN NaN NaN NaN 113.94 1 117.59 117.09 118.09 3.6511 0 0 0 0.53105 1 27112 27112 1.6526 0 1 32714 15467 20839 20850 37601 37601 -0.08057831155360873 QFPAWRAIRPI 11 Unmodified _QFPAWRAIRPI_ 0 0 0 nc|ENSG00000278318|Q9UJW7-2|ZNF229;ENSG00000278318|ENST00000614049|ZNF229 nc|ENSG00000278318|Q9UJW7-2|ZNF229 nc|ENSG00000278318|Q9UJW7-2|ZNF229 MULTI-MSMS UPN48_class_I_Rep_1 5 452.5968322753906 3 452.262935 1353.76697 0.17974 8.129E-05 -0.0043229 -1.9551E-06 0.17542 7.9335E-05 452.262979216617 60.629 0.81577 64.103 63.514 64.33 3.4737 87 59 2 0 0 0 0.68081 1 13387 13387 0.45452 0.046251 1 160540 32715 5838 20840 20851 37602 37602 0.10424155579244143 QFPAWRAIRPI 11 Unmodified _QFPAWRAIRPI_ 0 0 0 nc|ENSG00000278318|Q9UJW7-2|ZNF229;ENSG00000278318|ENST00000614049|ZNF229 nc|ENSG00000278318|Q9UJW7-2|ZNF229 nc|ENSG00000278318|Q9UJW7-2|ZNF229 MULTI-MSMS UPN48_class_I_Rep_2 6 452.26287841796875 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.68081 1 13112 13112 0.45452 0.45452 1 500210 32716 5838 20840 20851 37603 37603 0.10424155579244143 QFPLLIALI 9 Unmodified _QFPLLIALI_ 0 0 0 REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2 REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2 MSMS UPN48_class_I_Rep_1 5 514.2513427734375 2 514.331153 1026.64775 NaN NaN NaN NaN NaN NaN NaN 71.361 1 74.827 74.327 75.327 3.466 0 0 0 0.36505 1 16679 16679 7.2892 0 1 + 32717 19140 20841 20852 37604 37604 0.13549568901839848 QFQLFLHR 8 Unmodified _QFQLFLHR_ 0 0 0 HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|240|1|anti-sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|240|1|anti-sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|240|1|anti-sense MSMS UPN48_class_I_Rep_2 6 544.80126953125 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 14.978 1 18.631 18.131 19.131 3.6535 0 0 0 0.40625 1 541 541 2.3027 0 1 32718 8358 20842 20853 37605 37605 0.0524057515392542 QFQVKAYTF 9 Unmodified _QFQVKAYTF_ 0 0 0 REV__L1MC5a_dup16130|chr20:8397051-8398212:-|2.6661485283677577|0.0188862289880487|7.14|150.0|57|1|anti-sense REV__L1MC5a_dup16130|chr20:8397051-8398212:-|2.6661485283677577|0.0188862289880487|7.14|150.0|57|1|anti-sense MSMS UPN48_class_I_Rep_3 7 566.2967529296875 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 78.953 1 82.575 82.075 83.075 3.6216 0 0 0 0.37476 1 18706 18706 6.7232 0.51738 1 + 32719 27143 20843 20854 37606 37606 0.01598029477304408 QFRAVYTAF 9 Unmodified _QFRAVYTAF_ 0 0 0 REV__nc|ENSG00000182264|Q8IYV9-2|IZUMO1 REV__nc|ENSG00000182264|Q8IYV9-2|IZUMO1 MSMS UPN48_class_I_Rep_3 7 551.7882690429688 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.683 1 39.35 38.85 39.85 3.6667 0 0 0 0.31276 1 5818 5818 10.074 1.9184 1 + 32720 20752 20844 20855 37607 37607 0.0140116268012207 QFRSKTTK 8 Unmodified _QFRSKTTK_ 0 0 0 REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|43|1|sense REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|43|1|sense MSMS UPN48_class_I_Rep_2 6 498.2847595214844 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 34.371 1 38.045 37.545 38.545 3.6735 0 0 0 0.40746 1 5533 5533 0.69038 0 1 + 32721 26320 20845 20856 37608 37608 0.05848278537371243 QFRTFHYF 8 Unmodified _QFRTFHYF_ 0 0 0 L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|43|1|anti-sense L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|43|1|anti-sense L1MB8_dup9074|chrX:73980925-73981919:-|2.8002981479482134|0.2193661343754463|3.67|151.0|43|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.2782592773438 2 573.279983 1144.54541 0.44712 0.00025633 -0.98116 -0.00056248 -0.53404 -0.00030615 573.2792873207329 70.701 0.50375 74.16 73.936 74.44 3.4598 84 54 3 0 0 0 0.82752 1 16525 16525 4.756 1.1595 1 186070 32722 11038 20846 20857 37609 37609 -0.02107704117065623 QFSAYGWPVF 10 Unmodified _QFSAYGWPVF_ 0 0 0 L1PA7_dup5909|chr7:26833414-26837339:+|1.6717486449548482|0.0446689248197687|5.23|149.0|209|3|anti-sense;L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|189|2|anti-sense L1PA7_dup5909|chr7:26833414-26837339:+|1.6717486449548482|0.0446689248197687|5.23|149.0|209|3|anti-sense L1PA7_dup5909|chr7:26833414-26837339:+|1.6717486449548482|0.0446689248197687|5.23|149.0|209|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.2855834960938 2 601.287474 1200.5604 NaN NaN NaN NaN NaN NaN NaN 58.388 1 61.886 61.386 62.386 3.4987 0 0 0 0.53105 1 12712 12712 9.3831 2.0939 1 32723 14792 20847 20858 37610 37610 -0.03186257039715201 QFSFLHSHL 9 Unmodified _QFSFLHSHL_ 0 0 0 HAL1_dup6627|chr4:139880822-139881705:+|3.3558338121024747|0.0234986049342898|7.16|151.0|37|1|anti-sense HAL1_dup6627|chr4:139880822-139881705:+|3.3558338121024747|0.0234986049342898|7.16|151.0|37|1|anti-sense HAL1_dup6627|chr4:139880822-139881705:+|3.3558338121024747|0.0234986049342898|7.16|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_3 7 558.28564453125 2 558.285266 1114.55598 NaN NaN NaN NaN NaN NaN NaN 46.955 1 50.591 50.091 51.091 3.6363 0 0 0 0.38478 1 9164 9164 4.3292 1.7518 1 32724 7906 20848 20859 37611 37611 0.0032827853738126578 QFSIETNKF 9 Unmodified _QFSIETNKF_ 0 0 0 REV__ENSG00000164434|ENST00000368444|FABP7 REV__ENSG00000164434|ENST00000368444|FABP7 MULTI-MSMS UPN48_class_I_Rep_2 6 557.2822265625 2 557.282389 1112.55022 0.40191 0.00022398 0.19027 0.00010604 0.59218 0.00033001 557.2823929059605 46.894 0.59261 50.644 50.385 50.978 3.7494 88 45 3 0 0 0 0.36392 1 9153 9153 10.074 1.4806 1 258630 + 32725 20065 20849 20860 37612 37612 -0.0015486476497699186 QFSLLHLYI 9 Unmodified _QFSLLHLYI_ 0 0 0 L1ME1_dup23983|chr13:72936336-72936987:-|1.069974679643637|0.0112762876514196|6.57|150.0|1|1|sense L1ME1_dup23983|chr13:72936336-72936987:-|1.069974679643637|0.0112762876514196|6.57|150.0|1|1|sense L1ME1_dup23983|chr13:72936336-72936987:-|1.069974679643637|0.0112762876514196|6.57|150.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 567.3011474609375 2 567.321317 1132.62808 NaN NaN NaN NaN NaN NaN NaN 46.115 1 46.115 45.615 46.615 0 0 0 0 0.38639 1 9430 9430 3.9444 0 1 32726 12320 20850 20861 37613 37613 0.06707192891076375 QFSNNEEEAP 10 Unmodified _QFSNNEEEAP_ 0 0 0 REV__nc|ENSG00000177034|Q5HYI7-5|MTX3 REV__nc|ENSG00000177034|Q5HYI7-5|MTX3 MSMS UPN46_class_I_Rep_3 1 582.7454223632812 2 582.743825 1163.4731 NaN NaN NaN NaN NaN NaN NaN 115.49 1 115.49 114.99 115.99 0 0 0 0 0.53105 1 28563 28563 1.3295 0 1 + 32727 20608 20851 20862 37614 37614 -0.1021012777193846 QFTPDLQQF 9 Unmodified _QFTPDLQQF_ 0 0 0 REV__ENSG00000104941|ENST00000221538|RSPH6A REV__ENSG00000104941|ENST00000221538|RSPH6A MULTI-MSMS UPN48_class_I_Rep_1 5 562.2511596679688 2 562.274564 1122.53457 0.46457 0.00026122 -0.19686 -0.00011069 0.26772 0.00015053 562.2743384801994 52.738 0.67104 56.257 55.94 56.611 3.5192 117 53 3 0 0 0 0.39745 1 10906 10906 8.1555 8.1555 1 347060 + 32728 18273 20852 20863 37615 37615 -0.021791512820072967 QFTPDLQQF 9 Unmodified _QFTPDLQQF_ 0 0 0 REV__ENSG00000104941|ENST00000221538|RSPH6A REV__ENSG00000104941|ENST00000221538|RSPH6A MULTI-MSMS UPN48_class_I_Rep_2 6 562.27392578125 2 562.274564 1122.53457 0.5356 0.00030116 -0.30502 -0.00017151 0.23058 0.00012965 562.2742687385677 52.687 0.68223 56.319 55.965 56.647 3.6322 102 45 3 0 0 0 0.1249 1 10892 10892 29.082 8.628 1 318900 + 32729 18273 20852 20863 37616 37616 -0.021791512820072967 QFTPDLQQF 9 Unmodified _QFTPDLQQF_ 0 0 0 REV__ENSG00000104941|ENST00000221538|RSPH6A REV__ENSG00000104941|ENST00000221538|RSPH6A MULTI-MSMS UPN48_class_I_Rep_3 7 562.2743530273438 2 562.274564 1122.53457 0.29183 0.00016409 -0.11285 -6.3451E-05 0.17898 0.00010064 562.274440531225 52.679 0.74242 56.276 55.946 56.689 3.5979 115 52 3 0 0 0 0.17897 1 10843 10843 22.736 3.4793 1 337260 + 32730 18273 20852 20863 37617 37617 -0.021791512820072967 QFTVDGHLA 9 Unmodified _QFTVDGHLA_ 0 0 0 L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|150|3|anti-sense L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|150|3|anti-sense L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_2 6 494.2486267089844 2 494.248349 986.482145 NaN NaN NaN NaN NaN NaN NaN 55.573 1 59.129 58.629 59.629 3.5559 0 0 0 0.38784 1 11857 11857 3.5965 0 1 32731 13937 20853 20864 37618 37618 -0.011636896249569872 QFVKSVVP 8 Unmodified _QFVKSVVP_ 0 0 0 REV__MLT1A1-int_dup368|chr13:28166017-28167203:-|2.6427824532945285|0.0122416971845715|7.75|151.0|65|3|anti-sense REV__MLT1A1-int_dup368|chr13:28166017-28167203:-|2.6427824532945285|0.0122416971845715|7.75|151.0|65|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2688293457031 2 452.268553 902.522553 -0.18948 -8.5697E-05 0.78685 0.00035587 0.59737 0.00027017 452.26899093025014 24.68 0.35544 24.68 24.429 24.784 0 57 36 2 0 0 0 0.82752 1 3231 3231 2.0598 0 1 135510 + 32732 31613 20854 20865 37619 37619 0.06739276765483737 QFVRPLIA 8 Unmodified _QFVRPLIA_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MSMS UPN47_class_I_Rep_1 2 472.2900085449219 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 39.131 1 42.796 42.296 43.296 3.6652 0 0 0 0.40625 1 7619 7619 2.3027 0 1 32733 1978 20855 20866 37620 37620 0.0915067189371257 QFWFRRFL 8 Unmodified _QFWFRRFL_ 0 0 0 REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF REV__ENST00000356218.8_1_14:51955989-52156529:+|nuORF MSMS UPN47_class_I_Rep_1 2 600.3274536132812 2 600.327268 1198.63998 NaN NaN NaN NaN NaN NaN NaN 27.153 1 30.919 30.419 31.419 3.7662 0 0 0 0.40746 1 3994 3994 0.69038 0.23204 1 + 32734 21864 20856 20867 37621 37621 0.04860854424941863 QFWKDYIY 8 Unmodified _QFWKDYIY_ 0 0 0 Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|16|1|sense Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|16|1|sense Tigger3_dup962|chr14:71060108-71063134:+|1.815619784903524|0.104659236986978|4.12|151.0|16|1|sense MSMS UPN47_class_I_Rep_3 4 581.7830810546875 2 581.782025 1161.5495 NaN NaN NaN NaN NaN NaN NaN 41.056 1 44.293 43.793 44.793 3.2372 0 0 0 0.40157 1 8290 8290 7.2892 0 1 32735 33352 20857 20868 37622 37622 -0.024816594140020243 QFWKMKKF 8 Unmodified _QFWKMKKF_ 0 0 0 L1MB3_dup7978|chr8:123385565-123386691:+|1.211807634685187|0.0151084071314248|6.33|151.0|37|3|sense L1MB3_dup7978|chr8:123385565-123386691:+|1.211807634685187|0.0151084071314248|6.33|151.0|37|3|sense L1MB3_dup7978|chr8:123385565-123386691:+|1.211807634685187|0.0151084071314248|6.33|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 571.8129272460938 2 571.812605 1141.61066 NaN NaN NaN NaN NaN NaN NaN 71.303 1 71.303 70.803 71.803 0 0 0 0 0.40604 1 16419 16419 2.5775 0 1 32736 10456 20858 20869 37623 37623 0.045515740844393804 QFYDLHKNN 9 Unmodified _QFYDLHKNN_ 0 0 0 REV__L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|31|3|anti-sense REV__L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_3 7 589.7833251953125 2 589.783087 1177.55162 NaN NaN NaN NaN NaN NaN NaN 86.825 1 90.616 90.116 91.116 3.7905 0 0 0 0.38784 1 20604 20604 3.5965 0.31518 1 + 32737 28305 20859 20870 37624 37624 -0.030052306761945147 QFYFFFYF 8 Unmodified _QFYFFFYF_ 0 0 0 ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|2|intron;ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|1|intron ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|2|intron ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|2|intron MSMS UPN47_class_I_Rep_1 2 604.7738647460938 2 604.776211 1207.53787 NaN NaN NaN NaN NaN NaN NaN 17.908 1 21.458 20.958 21.958 3.5504 0 0 0 0.40746 1 1412 1412 0.69038 0.088878 1 32738 3008 20860 20871 37625 37625 -0.057598564373392946 QFYFFFYF 8 Unmodified _QFYFFFYF_ 0 0 0 ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|2|intron;ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|1|intron ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|2|intron ENSG00000137145.20,DENND4C,chr9,+,I15.1,19326195,19328029|27|5.36|2|intron MSMS UPN47_class_I_Rep_1 2 604.7750854492188 2 604.776211 1207.53787 NaN NaN NaN NaN NaN NaN NaN 18.861 1 22.442 21.942 22.942 3.5806 0 0 0 0.40746 1 1649 1649 0.69038 0.088878 1 32739 3008 20860 20871 37626 37626 -0.057598564373392946 QFYFRPLFS 9 Unmodified _QFYFRPLFS_ 0 0 0 REV__ENSG00000136560.14,TANK,chr2,+,I9.1,161180086,161197336|38|10.36|1|intron REV__ENSG00000136560.14,TANK,chr2,+,I9.1,161180086,161197336|38|10.36|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 602.81201171875 2 602.811116 1203.60768 0.47849 0.00028844 0.080482 4.8516E-05 0.55897 0.00033695 602.8111244302471 70.759 0.34743 74.295 74.149 74.497 3.5359 51 40 2 0 0 0 0.46869 1 16437 16437 3.9444 0 1 97837 + 32740 19192 20861 20872 37627 37627 0.014020222312637998 QFYFRPLFS 9 Unmodified _QFYFRPLFS_ 0 0 0 REV__ENSG00000136560.14,TANK,chr2,+,I9.1,161180086,161197336|38|10.36|1|intron REV__ENSG00000136560.14,TANK,chr2,+,I9.1,161180086,161197336|38|10.36|1|intron MSMS UPN48_class_I_Rep_2 6 602.8119506835938 2 602.811116 1203.60768 NaN NaN NaN NaN NaN NaN NaN 70.522 1 74.058 73.558 74.558 3.5359 0 0 0 0.39518 1 16410 16410 1.8442 0 1 + 32741 19192 20861 20872 37628 37628 0.014020222312637998 QFYKMSMY 8 Unmodified _QFYKMSMY_ 0 0 0 ENSG00000164291|ENST00000380009|ARSK ENSG00000164291|ENST00000380009|ARSK ENSG00000164291|ENST00000380009|ARSK MULTI-MSMS UPN47_class_I_Rep_3 4 549.2420043945312 2 549.243363 1096.47217 0.060485 3.3221E-05 -0.34287 -0.00018832 -0.28238 -0.0001551 549.2431048778549 42.07 0.51077 45.309 45.153 45.664 3.2394 62 39 2 0 0 0 0.82752 1 8658 8658 4.756 2.1785 1 101820 32742 4100 20862 20873 37629 37629 -0.07220336946170391 QFYWGKFQK 9 Unmodified _QFYWGKFQK_ 0 0 0 REV__ENST00000523334.1_1_6:114270077-114270239:-|nuORF REV__ENST00000523334.1_1_6:114270077-114270239:-|nuORF MSMS UPN48_class_I_Rep_2 6 616.3165283203125 2 616.316566 1230.61858 NaN NaN NaN NaN NaN NaN NaN 30.072 1 33.707 33.207 34.207 3.6351 0 0 0 0.4007 1 4350 4350 0.52476 0 1 + 32743 22796 20863 20874 37630 37630 0.012494246055666736 QGAEGLLARI 10 Unmodified _QGAEGLLARI_ 0 0 0 ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1 ENSG00000166924|ENST00000300179|NYAP1 ENSG00000166924|ENST00000300179|NYAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 514.2976684570312 2 514.298373 1026.58219 0.11886 6.1128E-05 0.1126 5.7912E-05 0.23146 0.00011904 514.2984082006495 46.289 0.55978 49.533 49.238 49.798 3.2439 42 35 2 0 0 0 0.51021 1 9927 9927 10.8 2.0541 1 47464 32744 4275 20864 20875 37631 37631 0.0699654770885445 QGAEGLLARI 10 Unmodified _QGAEGLLARI_ 0 0 0 ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1 ENSG00000166924|ENST00000300179|NYAP1 ENSG00000166924|ENST00000300179|NYAP1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 514.298373 1026.58219 -0.083965 -4.3183E-05 0.19936 0.00010253 0.1154 5.9349E-05 514.2984359498115 46.176 0.46194 49.529 49.237 49.699 3.3534 -0.0018938 3.7766E-05 NaN 10.8 45 29 2 NaN NaN NaN NaN 0 NaN NaN 0 67193 32745 4275 20864 20875 0.0699654770885445 QGDAVVLKI 9 Unmodified _QGDAVVLKI_ 0 0 0 nc|ENSG00000162729|Q969P0-3|IGSF8;ENSG00000162729|ENST00000314485|IGSF8 nc|ENSG00000162729|Q969P0-3|IGSF8 nc|ENSG00000162729|Q969P0-3|IGSF8 MULTI-MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.784567 941.554582 0.12486 5.8908E-05 -0.12339 -5.8216E-05 0.001467 6.9209E-07 471.7845911733963 51.128 0.30083 54.467 54.316 54.617 3.3386 24 15 2 0 0 0 0.32682 1 11263 11263 12.241 0 1 48261 32746 3953 20865 20876 37632 37632 0.08146644448606821 QGDNIYLF 8 Unmodified _QGDNIYLF_ 0 0 0 REV__L1MB3_dup1964|chr2:86531550-86533509:-|2.615057290675124|0.2163194979606704|3.6|151.0|35|2|sense REV__L1MB3_dup1964|chr2:86531550-86533509:-|2.615057290675124|0.2163194979606704|3.6|151.0|35|2|sense MSMS UPN47_class_I_Rep_2 3 485.2361755371094 2 485.23745 968.460347 NaN NaN NaN NaN NaN NaN NaN 36.113 1 39.525 39.025 40.025 3.4114 0 0 0 0.40604 1 6737 6737 2.5775 0 1 + 32747 25857 20866 20877 37633 37633 -0.025144943735313063 QGDPQGYH 8 Unmodified _QGDPQGYH_ 0 0 0 REV__ENSG00000215853|ENST00000316073|RPTN REV__ENSG00000215853|ENST00000316073|RPTN MSMS UPN48_class_I_Rep_3 7 451.2629089355469 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 19.444 1 23.065 22.565 23.565 3.6215 0 0 0 0.40581 1 1469 1469 2.8892 0 1 + 32748 21276 20867 20878 37634 37634 -0.08157695244278784 QGESWLAI 8 Unmodified _QGESWLAI_ 0 0 0 REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|342|3|anti-sense REV__L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|342|3|anti-sense MSMS UPN48_class_I_Rep_1 5 452.232421875 2 452.232168 902.449782 NaN NaN NaN NaN NaN NaN NaN 65.553 1 69.005 68.505 69.505 3.4516 0 0 0 0.40501 1 14922 14922 3.9444 0 1 + 32749 29619 20868 20879 37635 37635 -0.0053447702796347585 QGFCCFHI 8 Unmodified _QGFCCFHI_ 0 0 0 REV__MLT1C_dup9514|chr8:128002401-128002837:-|2.4367558494673704|0.1854747816115943|3.72|151.0|11|2|sense REV__MLT1C_dup9514|chr8:128002401-128002837:-|2.4367558494673704|0.1854747816115943|3.72|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 477.7009582519531 2 477.701666 953.388779 NaN NaN NaN NaN NaN NaN NaN 23.366 1 23.366 22.866 23.866 0 0 0 0 0.40738 1 2918 2918 0.79363 0 1 + 32750 31659 20869 20880 37636 37636 -0.08978028603405619 QGFFLYCD 8 Unmodified _QGFFLYCD_ 0 0 0 L1MB7_dup1664|chr1:244402618-244404000:+|2.494387235460964|0.0975680179816555|4.68|151.0|95|3|anti-sense L1MB7_dup1664|chr1:244402618-244404000:+|2.494387235460964|0.0975680179816555|4.68|151.0|95|3|anti-sense L1MB7_dup1664|chr1:244402618-244404000:+|2.494387235460964|0.0975680179816555|4.68|151.0|95|3|anti-sense MSMS UPN47_class_I_Rep_2 3 496.2955017089844 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 118.42 1 121.9 121.4 122.4 3.4822 0 0 0 0.40738 1 28977 28977 0.79363 0 1 32751 10732 20870 20881 37637 37637 -0.08509525653994388 QGFIKPWL 8 Unmodified _QGFIKPWL_ 0 0 0 L1MEi_dup2233|chr6:143602122-143602739:-|1.648306535682792|0.0060098137661495|8.1|151.0|29|1|anti-sense L1MEi_dup2233|chr6:143602122-143602739:-|1.648306535682792|0.0060098137661495|8.1|151.0|29|1|anti-sense L1MEi_dup2233|chr6:143602122-143602739:-|1.648306535682792|0.0060098137661495|8.1|151.0|29|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.8094787597656 2 494.78437 987.554188 NaN NaN NaN NaN NaN NaN NaN 51.259 1 54.597 54.097 55.097 3.3386 0 0 0 0.40625 1 11339 11339 2.3027 0 1 32752 13451 20871 20882 37638 37638 0.059912695194157095 QGFQLTHSL 9 Unmodified _QGFQLTHSL_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000430210.1_1_1:227681388-227682478:-|nuORF;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_2 3 515.769287109375 2 515.769448 1029.52434 0.036507 1.8829E-05 0.053409 2.7547E-05 0.089916 4.6376E-05 515.769199140766 49.043 0.53082 52.389 52.115 52.646 3.3465 56 37 2 0 0 0 0.33654 1 10652 10652 11.64 3.7301 1 101970 32753 5222;5291;5787;6661 20872 20883 37639 37639 0.010762857834379247 QGFQLTHSL 9 Unmodified _QGFQLTHSL_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000430210.1_1_1:227681388-227682478:-|nuORF;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_3 4 515.7702026367188 2 515.769448 1029.52434 0.27751 0.00014313 -0.53496 -0.00027591 -0.25744 -0.00013278 515.7690656718845 49.126 0.61655 52.36 52.118 52.735 3.2345 45 37 2 0 0 0 0.21527 2 10745 10745;10773 19.257 8.4331 1 79876 32754 5222;5291;5787;6661 20872 20883 37640;37641 37640 0.010762857834379247 QGIDRTFM 8 Unmodified _QGIDRTFM_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|300|3|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|300|3|anti-sense MSMS UPN48_class_I_Rep_3 7 484.23626708984375 2 484.236927 966.459301 NaN NaN NaN NaN NaN NaN NaN 79.382 1 83.025 82.525 83.525 3.6423 0 0 0 0.40604 1 18821 18821 2.5775 0 1 + 32755 30116 20873 20884 37642 37642 -0.025270320140862168 QGKIVRVTV 9 Unmodified _QGKIVRVTV_ 0 0 0 MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|90|3|sense MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|90|3|sense MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|90|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.319091796875 2 500.319109 998.623664 -0.2328 -0.00011647 0.17765 8.8881E-05 -0.055151 -2.7593E-05 500.3191243457832 38.68 0.93217 42.345 41.997 42.929 3.6652 93 61 2 0 0 0 0.42249 1 7553 7553 6.7232 1.9672 1 154260 32756 16122 20874 20885 37643 37643 0.12429728468168832 QGKKLTKLKR 10 Unmodified _QGKKLTKLKR_ 0 0 0 REV__L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|132|3|sense REV__L1PA6_dup3351|chr9:62822444-62828465:-|5.390984494494983|0.4732955736906382|3.51|151.0|132|3|sense MSMS UPN47_class_I_Rep_3 4 600.4008178710938 2 600.400964 1198.78738 NaN NaN NaN NaN NaN NaN NaN 49.523 1 52.749 52.249 53.249 3.2262 0 0 0 0.53105 1 10861 10861 0 0 1 + 32757 29878 20875 20886 37644 37644 0.1959332623903265 QGKNILANL 9 Unmodified _QGKNILANL_ 0 0 0 REV__ENSG00000039537|ENST00000337836|C6 REV__ENSG00000039537|ENST00000337836|C6 MULTI-MSMS UPN47_class_I_Rep_1 2 485.78753662109375 2 485.787641 969.56073 -0.12862 -6.2484E-05 -1.0675 -0.00051857 -1.1961 -0.00058105 485.787543439886 45.655 1.0328 49.355 48.853 49.886 3.6999 154 59 4 0 0 0 0.15122 2 9578 9578;9626 25.399 0 1 581390 + 32758 17645 20876 20887 37645;37646 37645 0.07473162680128098 QGKNILANL 9 Unmodified _QGKNILANL_ 0 0 0 REV__ENSG00000039537|ENST00000337836|C6 REV__ENSG00000039537|ENST00000337836|C6 MULTI-MSMS UPN47_class_I_Rep_3 4 485.7875061035156 2 485.787641 969.56073 -0.012146 -5.9005E-06 -1.1262 -0.00054711 -1.1384 -0.00055301 485.78751023054286 46.118 1.3655 49.362 48.963 50.328 3.2441 178 84 3 0 0 0 0.10817 2 9803 9803;9847 32.305 0 1 398310 + 32759 17645 20876 20887 37647;37648 37647 0.07473162680128098 QGKNILANL 9 Unmodified _QGKNILANL_ 0 0 0 REV__ENSG00000039537|ENST00000337836|C6 REV__ENSG00000039537|ENST00000337836|C6 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 485.787641 969.56073 0.050366 2.4467E-05 -1.2277 -0.00059641 -1.1774 -0.00057195 485.7874749844749 46.013 1.0409 49.366 48.968 50.009 3.3534 0.0051291 -7.2695E-05 NaN 32.305 195 68 4 NaN NaN NaN NaN 0 NaN NaN 0 420920 + 32760 17645 20876 20887 0.07473162680128098 QGKQQQQI 8 Unmodified _QGKQQQQI_ 0 0 0 L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|43|3|sense L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|43|3|sense L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|43|3|sense MSMS UPN47_class_I_Rep_3 4 479.2588195800781 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 32.859 1 36.146 35.646 36.646 3.2867 0 0 0 0.40625 1 5789 5789 2.3027 1.5091 1 32761 15272 20877 20888 37649 37649 0.023951151236246915 QGLDIGLGAL 10 Unmodified _QGLDIGLGAL_ 0 0 0 REV__ENST00000473996.1_1_3:48454981-48455344:-|nuORF REV__ENST00000473996.1_1_3:48454981-48455344:-|nuORF MSMS UPN47_class_I_Rep_3 4 478.77410888671875 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.355 1 70.546 70.046 71.046 3.1914 0 0 0 0.53105 1 16303 16303 20.415 0 1 + 32762 22519 20878 20889 37650 37650 0.054300540689382615 QGLGHPHP 8 Unmodified _QGLGHPHP_ 0 0 0 MSTB1-int_dup8|chr1:117874574-117876065:+|1.352833596056351|0.4190376675362255|1.69|150.0|77|3|anti-sense MSTB1-int_dup8|chr1:117874574-117876065:+|1.352833596056351|0.4190376675362255|1.69|150.0|77|3|anti-sense MSTB1-int_dup8|chr1:117874574-117876065:+|1.352833596056351|0.4190376675362255|1.69|150.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 421.71710205078125 2 421.717019 841.419485 -0.51084 -0.00021543 0.23712 9.9998E-05 -0.27372 -0.00011543 421.71704137659367 15.443 0.35746 18.94 18.826 19.183 3.4968 50 40 2 0 0 0 0.82752 1 795 795 0.79363 0 1 31282 32763 16588 20879 20890 37651 37651 -0.007567909024828623 QGLLVGSPLA 10 Unmodified _QGLLVGSPLA_ 0 0 0 REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|213|1|anti-sense REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|213|1|anti-sense MSMS UPN48_class_I_Rep_1 5 477.7848815917969 2 477.784567 953.554582 NaN NaN NaN NaN NaN NaN NaN 60.027 1 63.507 63.007 64.007 3.4801 0 0 0 0.53105 1 13242 13242 3.5965 0 1 + 32764 29645 20880 20891 37652 37652 0.07594644448613508 QGLNLYGH 8 Unmodified _QGLNLYGH_ 0 0 0 REV__nc|ENSG00000140479|P29122-4|PCSK6 REV__nc|ENSG00000140479|P29122-4|PCSK6 MSMS UPN47_class_I_Rep_1 2 451.2168884277344 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 86.914 1 90.551 90.051 91.051 3.6372 0 0 0 0.40738 1 21713 21713 0.79363 0 1 + 32765 31996 20881 20892 37653 37653 -0.008839414508543086 QGNELQLPF 9 Unmodified _QGNELQLPF_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MSMS UPN47_class_I_Rep_3 4 523.27001953125 2 523.269281 1044.52401 0.26906 0.00014079 -0.17149 -8.9733E-05 0.097575 5.1058E-05 523.2691496945127 60.934 0.53835 64.099 63.849 64.388 3.1651 72 52 2 0 0 0 0.31407 1 14325 14325 13.042 0 1 149600 + 32766 19106 20882 20893 37654 37654 0.003528660635538472 QGNELQLPF 9 Unmodified _QGNELQLPF_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH UPN47_class_I_Rep_1 2 2 523.269281 1044.52401 0.33213 0.00017379 -0.089366 -4.6762E-05 0.24277 0.00012703 523.2691309787685 60.643 0.53637 64.025 63.801 64.337 3.3815 -0.12648 5.3666E-06 NaN 13.042 81 50 3 NaN NaN NaN NaN 0 NaN NaN 0 120440 + 32767 19106 20882 20893 0.003528660635538472 QGNELQLPF 9 Unmodified _QGNELQLPF_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.269281 1044.52401 0.061459 3.216E-05 -0.0061638 -3.2253E-06 0.055295 2.8934E-05 523.2692987488535 60.894 0.53102 64.16 63.903 64.434 3.2654 0.0083547 9.2441E-05 NaN 13.042 86 52 2 NaN NaN NaN NaN 0 NaN NaN 0 141140 + 32768 19106 20882 20893 0.003528660635538472 QGNELQLPF 9 Unmodified _QGNELQLPF_ 0 0 0 REV__ENSG00000134698|ENST00000373210|AGO4 REV__ENSG00000134698|ENST00000373210|AGO4 MULTI-MATCH UPN48_class_I_Rep_1 5 2 523.269281 1044.52401 0.45488 0.00023803 1.0382 0.00054325 1.4931 0.00078127 523.2698078597986 60.848 0.051514 64.322 64.3 64.351 3.4737 0.1706 0.0011854 NaN 13.042 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 68815 + 32769 19106 20882 20893 0.003528660635538472 QGNLIVDMEKF 11 Unmodified _QGNLIVDMEKF_ 0 0 0 L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 647.3292846679688 2 647.329013 1292.64347 0.57594 0.00037282 0.24305 0.00015734 0.81899 0.00053016 647.3290045571932 58.952 0.99105 62.439 61.965 62.956 3.487 142 62 4 0 0 0 0.32745 1 12962 12962 28.495 0 1 1017900 32770 11733 20883 20894 37655 37655 0.008856916259674108 QGNLIVDMEKF 11 Unmodified _QGNLIVDMEKF_ 0 0 0 L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 647.3294677734375 2 647.329013 1292.64347 0.5879 0.00038056 0.32493 0.00021034 0.91283 0.0005909 647.3290845860802 58.834 1.1423 62.333 61.952 63.094 3.4987 186 72 4 0 0 0 0.28117 3 12961 12838;12881;12961 34.932 0 1 952490 32771 11733 20883 20894 37656;37657;37658 37658 0.008856916259674108 QGNLIVDMEKF 11 Unmodified _QGNLIVDMEKF_ 0 0 0 L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense L1MC5a_dup2395|chr2:191700103-191700867:+|1.3108200968340862|0.4660982354876758|1.49|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 647.3290405273438 2 647.329013 1292.64347 0.60461 0.00039138 0.30685 0.00019863 0.91146 0.00059001 647.3291055832264 58.749 1.2735 62.272 61.761 63.034 3.5231 192 86 3 0 0 0 0.32209 3 12624 12624;12875;12920 13.615 0 1 1313000 32772 11733 20883 20894 37659;37660;37661 37659 0.008856916259674108 QGPDTDDKQLK 11 Unmodified _QGPDTDDKQLK_ 0 0 0 REV__nc|ENSG00000164815|O43913-2|ORC5 REV__nc|ENSG00000164815|O43913-2|ORC5 MSMS UPN47_class_I_Rep_3 4 622.8111572265625 2 622.809499 1243.60444 NaN NaN NaN NaN NaN NaN NaN 49.369 1 52.603 52.103 53.103 3.2345 0 0 0 0.38417 1 10815 10815 2.4985 0.84587 1 + 32773 20087 20884 20895 37662 37662 -0.007613174040670856 QGPEDKPVL 9 Unmodified _QGPEDKPVL_ 0 0 0 L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|1|1|sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|1|1|sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.7638244628906 2 491.763832 981.513111 0.18814 9.2521E-05 -0.15194 -7.4718E-05 0.036201 1.7802E-05 491.76371394710225 44.33 0.64513 48.092 47.817 48.462 3.7617 81 46 2 0 0 0 0.37599 1 8466 8466 9.3831 9.3831 1 232050 32774 8670 20885 20896 37663 37663 0.02161463689287757 QGPGEFYQTF 10 Unmodified _QGPGEFYQTF_ 0 0 0 L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|56|3|sense L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|56|3|sense L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|56|3|sense MSMS UPN48_class_I_Rep_1 5 587.2640380859375 2 587.264196 1172.51384 NaN NaN NaN NaN NaN NaN NaN 68.491 1 71.943 71.443 72.443 3.4517 0 0 0 0.53105 1 15819 15819 4.1895 0.59301 1 32775 9080 20886 20897 37664 37664 -0.06551741661678534 QGPKLLKQ 8 Unmodified _QGPKLLKQ_ 0 0 0 REV__ENSG00000142959|ENST00000372207|BEST4 REV__ENSG00000142959|ENST00000372207|BEST4 MSMS UPN47_class_I_Rep_3 4 456.286865234375 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 24.077 1 27.428 26.928 27.928 3.3509 0 0 0 0.40738 1 3171 3171 0.79363 0 1 + 32776 19422 20887 20898 37665 37665 0.10114368031088361 QGQALWVATY 10 Unmodified _QGQALWVATY_ 0 0 0 REV__L1M2c_dup75|chr4:13452073-13455939:-|3.898613414122664|0.1059276616703722|5.2|151.0|184|2|anti-sense REV__L1M2c_dup75|chr4:13452073-13455939:-|3.898613414122664|0.1059276616703722|5.2|151.0|184|2|anti-sense MSMS UPN48_class_I_Rep_2 6 568.7899169921875 2 568.790381 1135.56621 NaN NaN NaN NaN NaN NaN NaN 53.533 1 57.142 56.642 57.642 3.6098 0 0 0 0.53105 1 11229 11229 6.7232 1.9672 1 + 32777 24283 20888 20899 37666 37666 0.003848414719413995 QGQKGVAYDL 10 Unmodified _QGQKGVAYDL_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.7800903320312 2 539.780013 1077.54547 0.37757 0.0002038 -0.50138 -0.00027063 -0.12381 -6.6831E-05 539.7796866831895 50.327 0.81477 53.852 53.517 54.332 3.5246 93 54 3 0 0 0 0.38974 2 10286 10232;10286 20.415 4.2654 1 229450 32778 1458 20889 20900 37667;37668 37668 0.009802510922781948 QGQKGVAYDL 10 Unmodified _QGQKGVAYDL_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS UPN48_class_I_Rep_2 6 539.7799682617188 2 539.780013 1077.54547 0.43428 0.00023442 -0.38578 -0.00020823 0.048508 2.6183E-05 539.7797420363706 50.15 0.78839 53.845 53.381 54.169 3.6946 78 50 2 0 0 0 0.4561 2 10211 10211;10251 15.248 1.4208 1 267240 32779 1458 20889 20900 37669;37670 37669 0.009802510922781948 QGQKGVAYDL 10 Unmodified _QGQKGVAYDL_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS UPN48_class_I_Rep_3 7 539.7798461914062 2 539.780013 1077.54547 0.44249 0.00023885 -0.5089 -0.00027469 -0.066409 -3.5846E-05 539.7795987208032 50.286 0.69542 53.907 53.56 54.256 3.621 77 42 3 0 0 0 0.32646 2 10173 10173;10244 26.268 4.7312 1 265380 32780 1458 20889 20900 37671;37672 37671 0.009802510922781948 QGQNALVS 8 Unmodified _QGQNALVS_ 0 0 0 THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|76|2|anti-sense THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|76|2|anti-sense THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|76|2|anti-sense MSMS UPN48_class_I_Rep_2 6 408.7132873535156 2 408.714142 815.413731 NaN NaN NaN NaN NaN NaN NaN 66.53 1 70.016 69.516 70.516 3.4866 0 0 0 0.40625 1 15207 15207 2.3027 0 1 32781 32924 20890 20901 37673 37673 -0.001359342048203871 QGRFFYSAGDS 11 Unmodified _QGRFFYSAGDS_ 0 0 0 REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17 REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17 MSMS UPN47_class_I_Rep_3 4 617.7791137695312 2 617.778002 1233.54145 NaN NaN NaN NaN NaN NaN NaN 47.373 1 50.614 50.114 51.114 3.2405 0 0 0 0.38417 1 10218 10218 1.1933 0 1 + 32782 21132 20891 20902 37674 37674 -0.06597838401444278 QGRKFFLIA 9 Unmodified _QGRKFFLIA_ 0 0 0 L1MC4_dup20263|chr15:63519065-63520554:-|3.500981060428465|0.1960975295624056|4.16|151.0|12|1|sense L1MC4_dup20263|chr15:63519065-63520554:-|3.500981060428465|0.1960975295624056|4.16|151.0|12|1|sense L1MC4_dup20263|chr15:63519065-63520554:-|3.500981060428465|0.1960975295624056|4.16|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 -0.01787 -9.6554E-06 0.044796 2.4204E-05 0.026926 1.4549E-05 540.3215116373782 24.481 0.32246 24.481 24.373 24.695 0 56 33 3 0 0 0 0.50088 1 3258 3258 0.52476 0 1 207320 32783 11447 20892 20903 37675 37675 0.09258032330808419 QGRKLGKTLG 10 Unmodified _QGRKLGKTLG_ 0 0 0 L1MC4_dup10832|chr7:92252588-92253268:-|1.066128676378838|0.01466570828438|6.18|151.0|2|1|sense L1MC4_dup10832|chr7:92252588-92253268:-|1.066128676378838|0.01466570828438|6.18|151.0|2|1|sense L1MC4_dup10832|chr7:92252588-92253268:-|1.066128676378838|0.01466570828438|6.18|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 529.3272094726562 2 529.327465 1056.64038 NaN NaN NaN NaN NaN NaN NaN 97.49 1 101.28 100.78 101.78 3.7861 0 0 0 0.53105 1 24157 24157 1.4819 0 1 32784 11395 20893 20904 37676 37676 0.11432229354113588 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN47_class_I_Rep_1 2 406.2487487792969 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 80.349 1 83.814 83.314 84.314 3.465 0 0 0 0.53105 1 20020 20020 0.77653 0.078866 1 32785 13502 20894 20905 37677 37677 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN47_class_I_Rep_1 2 406.2489318847656 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 81.494 1 84.981 84.481 85.481 3.4874 0 0 0 0.53105 1 20336 20336 0.77653 0.078866 1 32786 13502 20894 20905 37678 37678 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN47_class_I_Rep_1 2 406.2489929199219 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 81.782 1 85.294 84.794 85.794 3.5122 0 0 0 0.53105 1 20418 20418 0.77653 0.078866 1 32787 13502 20894 20905 37679 37679 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN47_class_I_Rep_2 3 406.2484130859375 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 80.619 1 83.989 83.489 84.489 3.3694 0 0 0 0.53105 1 20071 20071 0.77653 0.078866 1 32788 13502 20894 20905 37680 37680 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN47_class_I_Rep_2 3 406.24835205078125 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 82.927 1 86.326 85.826 86.826 3.3984 0 0 0 0.53105 1 20670 20670 0.77653 0.14971 1 32789 13502 20894 20905 37681 37681 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN47_class_I_Rep_3 4 406.248291015625 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 85.304 1 88.676 88.176 89.176 3.3716 0 0 0 0.53105 1 21377 21377 0.77653 0.078866 1 32790 13502 20894 20905 37682 37682 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN48_class_I_Rep_1 5 406.2489318847656 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 81.094 1 84.656 84.156 85.156 3.5624 0 0 0 0.53105 1 19329 19329 0.77653 0.078866 1 32791 13502 20894 20905 37683 37683 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN48_class_I_Rep_2 6 406.249267578125 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 81.167 1 84.824 84.324 85.324 3.6567 0 0 0 0.53105 1 19262 19262 0.77653 0.078866 1 32792 13502 20894 20905 37684 37684 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN48_class_I_Rep_3 7 406.24835205078125 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 80.993 1 84.657 84.157 85.157 3.6635 0 0 0 0.53105 1 19168 19168 0.77653 0.078866 1 32793 13502 20894 20905 37685 37685 0.12079296028105091 QGRPTVKFRK 10 Unmodified _QGRPTVKFRK_ 0 0 0 L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense L1P2_dup647|chr6:111505513-111507862:-|1.358191784949026|0.1187929782287694|3.52|151.0|60|3|sense MSMS UPN48_class_I_Rep_3 7 406.248779296875 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 81.735 1 85.421 84.921 85.921 3.685 0 0 0 0.53105 1 19359 19359 0.77653 0.078866 1 32794 13502 20894 20905 37686 37686 0.12079296028105091 QGRQMWQVF 9 Unmodified _QGRQMWQVF_ 0 0 0 REV__nc|ENSG00000211899|P01871-1|IGHM REV__nc|ENSG00000211899|P01871-1|IGHM MULTI-MSMS UPN48_class_I_Rep_1 5 590.2906494140625 2 590.290025 1178.5655 0.44148 0.0002606 -0.49259 -0.00029077 -0.051111 -3.0171E-05 590.2895279389328 77.394 0.13637 80.916 80.9 81.036 3.5221 19 11 2 0 0 0 0.40174 1 18422 18422 7.9102 0 1 144980 + 32795 32103 20895 20906 37687 37687 -0.016642764487642125 QGRSYGRF 8 Unmodified _QGRSYGRF_ 0 0 0 REV__ENST00000563255.1_1_16:65157767-65158064:-|nuORF REV__ENST00000563255.1_1_16:65157767-65158064:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.8119812011719 2 485.746308 969.478063 NaN NaN NaN NaN NaN NaN NaN 78.36 1 81.642 81.142 82.142 3.2816 0 0 0 0.40625 1 19538 19538 2.3027 0.4585 1 + 32796 23040 20896 20907 37688 37688 -0.007897343280092173 QGSEPTHVFY 10 Unmodified _QGSEPTHVFY_ 0 0 0 REV__NFIX|p.T388Sfs*12|1|0.16|ENSG00000008441|chr19:13081760-13081763|CCGA/-|frameshift_variant REV__NFIX|p.T388Sfs*12|1|0.16|ENSG00000008441|chr19:13081760-13081763|CCGA/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 582.7677612304688 2 582.769645 1163.52474 NaN NaN NaN NaN NaN NaN NaN 45.697 1 49.397 48.897 49.897 3.6999 0 0 0 0.53105 1 9623 9623 3.5965 0.70727 1 + 32797 17554 20897 20908 37689 37689 -0.05048339287372983 QGSSCCCFYF 10 Unmodified _QGSSCCCFYF_ 0 0 0 L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|150|1|anti-sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|150|1|anti-sense L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_1 2 572.696044921875 2 572.698463 1143.38237 NaN NaN NaN NaN NaN NaN NaN 27.606 1 31.372 30.872 31.872 3.7662 0 0 0 0.53105 1 4132 4132 0.45834 0.057624 1 32798 15217 20898 20909 37690 37690 -0.1835833461709626 QGTILSCNQLT 11 Unmodified _QGTILSCNQLT_ 0 0 0 REV__ENSG00000100625|ENST00000216513|SIX4 REV__ENSG00000100625|ENST00000216513|SIX4 MULTI-MSMS UPN48_class_I_Rep_3 7 589.7987060546875 2 589.297713 1176.58087 0.41624 0.00024529 -3.0511 -0.001798 -2.6349 -0.0015527 589.296919635109 36.385 0.028847 40.052 40.033 40.062 3.6667 5 3 2 0 0 0 0.66059 1 6019 6019 2.2828 0.43854 1 38969 + 32799 18126 20899 20910 37691 37691 -0.0003545444224073435 QGTQFSSK 8 Unmodified _QGTQFSSK_ 0 0 0 L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|8|1|sense L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|8|1|sense L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.71966552734375 2 441.719424 881.424296 -0.44157 -0.00019505 0.72502 0.00032026 0.28345 0.00012521 441.71979318592986 14.072 0.22915 14.072 14.004 14.234 0 40 26 2 0 0 0 0.82752 1 546 546 6.2058 0 1 40022 32800 9885 20900 20911 37692 37692 -0.02115951550376849 QGWKTKYHL 9 Unmodified _QGWKTKYHL_ 0 0 0 L1PB3_dup3376|chr19:30021105-30022077:-|1.1897230768840297|0.0185340712982489|6.0|150.0|17|2|sense L1PB3_dup3376|chr19:30021105-30022077:-|1.1897230768840297|0.0185340712982489|6.0|150.0|17|2|sense L1PB3_dup3376|chr19:30021105-30022077:-|1.1897230768840297|0.0185340712982489|6.0|150.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8139038085938 2 580.81419 1159.61383 0.42676 0.00024787 0.098507 5.7214E-05 0.52527 0.00030508 580.8140689367835 49.663 0.86378 53.358 52.902 53.766 3.6946 90 56 2 0 0 0 0.23293 1 9977 9977 18.146 4.2403 1 378250 32801 15284 20901 20912 37693 37693 0.04040540462779063 QGWLNLRCLC 10 Unmodified _QGWLNLRCLC_ 0 0 0 REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|128|3|sense REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|128|3|sense MSMS UPN47_class_I_Rep_2 3 603.75146484375 2 603.299536 1204.58452 NaN NaN NaN NaN NaN NaN NaN 35.961 1 39.372 38.872 39.872 3.4114 0 0 0 0.53105 1 6691 6691 1.4819 0 1 + 32802 29531 20902 20913 37694 37694 -0.009590631493438195 QGYLRSVF 8 Unmodified _QGYLRSVF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 485.2613830566406 2 485.261259 968.507966 0.018627 9.0392E-06 0.068 3.2998E-05 0.086628 4.2037E-05 485.26123015170606 50.95 0.85446 54.545 54.175 55.029 3.5951 76 40 3 0 0 0 0.82752 1 11210 11210 19.257 2.3147 1 133240 32803 1325 20903 20914 37695 37695 0.0224520461732709 QGYLRSVF 8 Unmodified _QGYLRSVF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 485.2612609863281 2 485.261259 968.507966 0.28303 0.00013735 -0.2544 -0.00012345 0.028635 1.3895E-05 485.26106682926365 51.415 0.76382 54.753 54.277 55.041 3.3386 70 38 2 0 0 0 0.82752 3 11332 11332;11355;11376 19.257 3.4098 1 143160 32804 1325 20903 20914 37696;37697;37698 37696 0.0224520461732709 QGYLRSVF 8 Unmodified _QGYLRSVF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 485.26116943359375 2 485.261259 968.507966 0.23565 0.00011435 -0.18803 -9.1242E-05 0.047628 2.3112E-05 485.26106531095036 51.562 0.88268 54.778 54.352 55.234 3.2163 73 45 2 0 0 0 0.82752 3 11494 11410;11448;11494 18.146 3.3081 1 119530 32805 1325 20903 20914 37699;37700;37701 37701 0.0224520461732709 QGYRSIVF 8 Unmodified _QGYRSIVF_ 0 0 0 L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|68|2|anti-sense L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|68|2|anti-sense L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|68|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.2613220214844 2 485.261259 968.507966 0.018627 9.0392E-06 0.068 3.2998E-05 0.086628 4.2037E-05 485.26123015170606 50.95 0.85446 54.545 54.175 55.029 3.5951 76 40 3 0 0 0 0.82752 1 11251 11251 15.847 0 1 133240 32806 15009 20904 20915 37702 37702 0.022452046173384588 QGYSDFINR 9 Unmodified _QGYSDFINR_ 0 0 0 ENST00000459706.1_1_2:15757448-15761320:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1 ENST00000459706.1_1_2:15757448-15761320:+|nuORF ENST00000459706.1_1_2:15757448-15761320:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 550.261962890625 2 550.261988 1098.50942 0.36391 0.00020024 -1.1726 -0.00064525 -0.80872 -0.00044501 550.261017218729 46.499 0.42111 46.499 46.331 46.752 0 55 43 2 0 0 0 0.26468 1 9525 9525 16.149 7.5558 1 179760 32807 1192 20905 20916 37703 37703 -0.035892060845753804 QGYSNPRSIP 10 Unmodified _QGYSNPRSIP_ 0 0 0 HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|51|2|sense HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|51|2|sense HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|51|2|sense MSMS UPN48_class_I_Rep_3 7 559.7821044921875 2 559.783087 1117.55162 NaN NaN NaN NaN NaN NaN NaN 59.529 1 63.045 62.545 63.545 3.5169 0 0 0 0.53105 1 13000 13000 2.9952 0 1 32808 8025 20906 20917 37704 37704 -0.0024523067620521033 QHADLPSIFS 10 Unmodified _QHADLPSIFS_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MULTI-MSMS UPN47_class_I_Rep_1 2 558.7693481445312 2 557.780013 1113.54547 0.15353 8.5635E-05 -0.6348 -0.00035408 -0.48127 -0.00026845 557.7793778016858 46.514 0.15837 50.214 50.071 50.23 3.6999 13 10 2 0 0 0 0.56333 1 9852 9852 1.4819 0 1 44915 32809 4212 20907 20918 37705 37705 -0.006757489077244827 QHAKQAHR 8 Unmodified _QHAKQAHR_ 0 0 0 REV__nc|ENSG00000197893|Q86VF7-4|NRAP REV__nc|ENSG00000197893|Q86VF7-4|NRAP MSMS UPN46_class_I_Rep_3 1 488.26483154296875 2 488.265199 974.515845 NaN NaN NaN NaN NaN NaN NaN 71.662 1 71.662 71.162 72.162 0 0 0 0 0.40746 1 16522 16522 0.69038 0 1 + 32810 21103 20908 20919 37706 37706 0.027567766574634334 QHCFFIVNLI 10 Unmodified _QHCFFIVNLI_ 0 0 0 REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|151|3|anti-sense REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|151|3|anti-sense MSMS UPN48_class_I_Rep_2 6 617.3291015625 2 617.326076 1232.6376 NaN NaN NaN NaN NaN NaN NaN 68.881 1 72.389 71.889 72.889 3.5083 0 0 0 0.53105 1 15917 15917 5.7319 0 1 + 32811 26640 20909 20920 37707 37707 0.030586379049736934 QHCGLLCVP 9 Unmodified _QHCGLLCVP_ 0 0 0 ENST00000382848.4_1_13:20763097-20763208:-|nuORF ENST00000382848.4_1_13:20763097-20763208:-|nuORF ENST00000382848.4_1_13:20763097-20763208:-|nuORF MSMS UPN48_class_I_Rep_3 7 485.2369689941406 2 485.235873 968.457192 NaN NaN NaN NaN NaN NaN NaN 32.497 1 36.186 35.686 36.686 3.6896 0 0 0 0.39518 1 4946 4946 1.8442 1.0506 1 32812 6501 20910 20921 37708 37708 -0.028297840235381955 QHCKHKTL 8 Unmodified _QHCKHKTL_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|3|1|sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 497.763427734375 2 497.766186 993.517819 NaN NaN NaN NaN NaN NaN NaN 38.645 1 42.31 41.81 42.81 3.6652 0 0 0 0.40643 1 7470 7470 2.0598 1.2661 1 + 32813 31505 20911 20922 37709 37709 0.02080069351052316 QHEVLSKL 8 Unmodified _QHEVLSKL_ 0 0 0 REV__L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|3|1|sense REV__L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 477.275390625 2 477.274367 952.53418 NaN NaN NaN NaN NaN NaN NaN 66.623 1 70.11 69.61 70.61 3.4866 0 0 0 0.40292 1 15235 15235 6.7232 0 1 + 32814 28493 20912 20923 37710 37710 0.056014737887949195 QHEVSAVGFS 10 Unmodified _QHEVSAVGFS_ 0 0 0 L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.7564086914062 2 530.756538 1059.49852 0.028753 1.5261E-05 0.68409 0.00036309 0.71285 0.00037835 530.75699111343 43.883 1.1638 47.578 46.856 48.02 3.6951 127 68 3 0 0 0 0.4965 1 9018 9018 12.241 0 1 151930 32815 12563 20913 20924 37711 37711 -0.028846084588622034 QHEVSAVGFS 10 Unmodified _QHEVSAVGFS_ 0 0 0 L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.7562255859375 2 530.756538 1059.49852 -0.024658 -1.3088E-05 0.62678 0.00033267 0.60212 0.00031958 530.7570675411894 44.203 1.2001 47.559 46.934 48.134 3.3556 134 73 3 0 0 0 0.4965 2 9157 9157;9212 12.241 0 1 178910 32816 12563 20913 20924 37712;37713 37712 -0.028846084588622034 QHEVSAVGFS 10 Unmodified _QHEVSAVGFS_ 0 0 0 L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense L1ME2z_dup3640|chr9:131451414-131452145:-|2.136524019803824|0.0785461041595442|4.77|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.7564697265625 2 530.756538 1059.49852 0.12348 6.5536E-05 0.57283 0.00030403 0.69631 0.00036957 530.7569156434143 44.308 0.98825 47.552 46.981 47.969 3.2441 90 55 2 0 0 0 0.43106 2 9288 9288;9332 17.113 0 1 187820 32817 12563 20913 20924 37714;37715 37714 -0.028846084588622034 QHEYRYYHKLY 11 Unmodified _QHEYRYYHKLY_ 0 0 0 REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|123|3|anti-sense REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|123|3|anti-sense MSMS UPN46_class_I_Rep_3 1 533.9264526367188 3 533.92828 1598.76301 NaN NaN NaN NaN NaN NaN NaN 20.539 1 20.539 20.039 21.039 0 0 0 0 0.38417 1 2154 2154 1.3296 0.82369 1 + 32818 26997 20914 20925 37716 37716 -0.012419787051157982 QHEYRYYHKLY 11 Unmodified _QHEYRYYHKLY_ 0 0 0 REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|123|3|anti-sense REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|123|3|anti-sense MSMS UPN46_class_I_Rep_3 1 533.9267578125 3 533.92828 1598.76301 NaN NaN NaN NaN NaN NaN NaN 20.914 1 20.914 20.414 21.414 0 0 0 0 0.38417 1 2254 2254 1.1098 0.096179 1 + 32819 26997 20914 20925 37717 37717 -0.012419787051157982 QHFAAQQTES 10 Unmodified _QHFAAQQTES_ 0 0 0 REV__ENST00000412481.1_2_2:119699870-119702370:+|nuORF REV__ENST00000412481.1_2_2:119699870-119702370:+|nuORF MSMS UPN47_class_I_Rep_3 4 573.7642211914062 2 573.762352 1145.51015 NaN NaN NaN NaN NaN NaN NaN 46.004 1 49.248 48.748 49.748 3.2441 0 0 0 0.53105 1 9801 9801 2.7352 0.15772 1 + 32820 17602 20915 20926 37718 37718 -0.0567841143554233 QHFSISSTTVT 11 Unmodified _QHFSISSTTVT_ 0 0 0 REV__L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|77|3|anti-sense REV__L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 604.3003540039062 2 604.30131 1206.58807 0.39507 0.00023874 0.1429 8.6357E-05 0.53797 0.0003251 604.3013569318393 61.596 1.5979 64.763 64.304 65.901 3.1667 347 112 5 0 0 0 0.65271 1 14426 14426 2.9952 2.9952 1 4535300 + 32821 26858 20916 20927 37719 37719 -0.006963985701531783 QHFYDFLF 8 Unmodified _QHFYDFLF_ 0 0 0 REV__L1ME1_dup12602|chr6:156136294-156137057:-|3.1665210067003584|0.0117263879428245|8.08|149.0|42|2|anti-sense REV__L1ME1_dup12602|chr6:156136294-156137057:-|3.1665210067003584|0.0117263879428245|8.08|149.0|42|2|anti-sense MSMS UPN47_class_I_Rep_2 3 558.73486328125 2 558.761092 1115.50763 NaN NaN NaN NaN NaN NaN NaN 40.527 1 43.898 43.398 44.398 3.3712 0 0 0 0.40404 1 8079 8079 5.2307 0.47466 1 + 32822 27589 20917 20928 37720 37720 -0.04550215102540278 QHHCTVAW 8 Unmodified _QHHCTVAW_ 0 0 0 AluJo_dup31403|chr7:140000218-140000498:+|1.6743926841825971|0.0091900359971906|7.51|151.0|5|1|sense AluJo_dup31403|chr7:140000218-140000498:+|1.6743926841825971|0.0091900359971906|7.51|151.0|5|1|sense AluJo_dup31403|chr7:140000218-140000498:+|1.6743926841825971|0.0091900359971906|7.51|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 491.2317810058594 2 491.221611 980.42867 NaN NaN NaN NaN NaN NaN NaN 19.795 1 19.795 19.295 20.295 0 0 0 0 0.40604 1 1949 1949 2.5775 0 1 32823 103 20918 20929 37721 37721 -0.06232765608478985 QHHCTVAW 8 Unmodified _QHHCTVAW_ 0 0 0 AluJo_dup31403|chr7:140000218-140000498:+|1.6743926841825971|0.0091900359971906|7.51|151.0|5|1|sense AluJo_dup31403|chr7:140000218-140000498:+|1.6743926841825971|0.0091900359971906|7.51|151.0|5|1|sense AluJo_dup31403|chr7:140000218-140000498:+|1.6743926841825971|0.0091900359971906|7.51|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 491.23114013671875 2 491.221611 980.42867 NaN NaN NaN NaN NaN NaN NaN 20.462 1 20.462 19.962 20.962 0 0 0 0 0.40604 1 2133 2133 2.5775 0 1 32824 103 20918 20929 37722 37722 -0.06232765608478985 QHHITLLL 8 Unmodified _QHHITLLL_ 0 0 0 L1PA6_dup1722|chr4:142648200-142654383:+|1.3570551238417865|0.1138459944263865|3.58|151.0|159|3|sense L1PA6_dup1722|chr4:142648200-142654383:+|1.3570551238417865|0.1138459944263865|3.58|151.0|159|3|sense L1PA6_dup1722|chr4:142648200-142654383:+|1.3570551238417865|0.1138459944263865|3.58|151.0|159|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7914733886719 2 487.792727 973.5709 0.24907 0.00012149 -1.1788 -0.00057499 -0.92968 -0.00045349 487.79185571128846 74.755 0.77141 78.345 77.885 78.656 3.59 135 85 2 0 0 0 0.82752 1 17643 17643 5.7604 0 1 213500 32825 14570 20919 20930 37723 37723 0.08305770405377189 QHHVSPSLET 10 Unmodified _QHHVSPSLET_ 0 0 0 REV__MSTD-int_dup118|chr3:57783054-57784716:+|1.760874706431112|0.0210159334062135|6.39|151.0|62|1|anti-sense REV__MSTD-int_dup118|chr3:57783054-57784716:+|1.760874706431112|0.0210159334062135|6.39|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_3 7 567.7811279296875 2 567.780544 1133.54654 NaN NaN NaN NaN NaN NaN NaN 63.611 1 67.12 66.62 67.62 3.5091 0 0 0 0.53105 1 14235 14235 3.5965 0.31518 1 + 32826 31922 20920 20931 37724 37724 -0.01489534538791304 QHIHVDIHTH 10 Unmodified _QHIHVDIHTH_ 0 0 0 REV__ENST00000475710.1_1_7:150497987-150498938:+|nuORF REV__ENST00000475710.1_1_7:150497987-150498938:+|nuORF MSMS UPN48_class_I_Rep_2 6 618.8153076171875 2 618.815253 1235.61595 NaN NaN NaN NaN NaN NaN NaN 72.405 1 75.969 75.469 76.469 3.5645 0 0 0 0.53105 1 16943 16943 2.9952 0 1 + 32827 17514 20921 20932 37725 37725 0.0075696920059726835 QHIHVDIHTH 10 Unmodified _QHIHVDIHTH_ 0 0 0 REV__ENST00000475710.1_1_7:150497987-150498938:+|nuORF REV__ENST00000475710.1_1_7:150497987-150498938:+|nuORF MSMS UPN48_class_I_Rep_3 7 618.8155517578125 2 618.815253 1235.61595 NaN NaN NaN NaN NaN NaN NaN 72.663 1 76.2 75.7 76.7 3.5373 0 0 0 0.53105 1 16951 16951 2.9952 0.26005 1 + 32828 17514 20921 20932 37726 37726 0.0075696920059726835 QHILHLMK 8 Unmodified _QHILHLMK_ 0 0 0 REV__L1ME4b_dup17002|chr15:31362825-31363502:-|1.078653939658795|0.0634293987517521|4.09|151.0|3|1|sense REV__L1ME4b_dup17002|chr15:31362825-31363502:-|1.078653939658795|0.0634293987517521|4.09|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 510.461669921875 2 510.294579 1018.57461 NaN NaN NaN NaN NaN NaN NaN 36.496 1 36.496 35.996 36.996 0 0 0 0 0.40625 1 6772 6772 2.3027 0 1 + 32829 28266 20922 20933 37727 37727 0.06606116907585147 QHISLTHYL 9 Unmodified _QHISLTHYL_ 0 0 0 REV__L1MB8_dup5490|chr6:24974414-24975169:+|2.015810243408422|0.0278757124166885|6.18|151.0|42|2|anti-sense REV__L1MB8_dup5490|chr6:24974414-24975169:+|2.015810243408422|0.0278757124166885|6.18|151.0|42|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 556.8004760742188 2 556.298373 1110.58219 0.56156 0.0003124 -0.22939 -0.00012761 0.33217 0.00018479 556.2981123562413 60.883 0.4956 64.361 64.122 64.618 3.4785 57 46 2 0 0 0 0.12321 1 13547 13547 3.9444 1.6417 1 161640 + 32830 26425 20923 20934 37728 37728 0.031325477088330445 QHKKKERKL 9 Unmodified _QHKKKERKL_ 0 0 0 REV__ENST00000496972.6_1_2:25600096-25600174:-|nuORF REV__ENST00000496972.6_1_2:25600096-25600174:-|nuORF MSMS UPN46_class_I_Rep_3 1 597.8759155273438 2 597.875114 1193.73567 NaN NaN NaN NaN NaN NaN NaN 106.69 1 106.69 106.19 107.19 0 0 0 0 0.4007 1 26019 26019 0.52476 0 1 + 32831 22665 20924 20935 37729 37729 0.14655582545174184 QHKRITLYST 10 Unmodified _QHKRITLYST_ 0 0 0 REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 416.2348327636719 3 416.234933 1245.68297 -0.13657 -5.6845E-05 0.46221 0.00019239 0.32564 0.00013554 416.2350106382139 103.47 0.12985 107.09 106.98 107.11 3.6209 20 18 2 0 0 0 0.51565 1 24930 24930 5.7834 2.7112 1 9020400 + 32832 27038 20925 20936 37730 37730 0.0699557969169291 QHKRITLYST 10 Unmodified _QHKRITLYST_ 0 0 0 REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 416.234933 1245.68297 0.098982 4.12E-05 -0.0083096 -3.4587E-06 0.090673 3.7741E-05 416.2347669164974 103.42 0.0364 107.2 107.19 107.22 3.7788 0.092002 -0.000853 NaN 5.7834 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 553860 + 32833 27038 20925 20936 0.0699557969169291 QHKRITLYST 10 Unmodified _QHKRITLYST_ 0 0 0 REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 416.234933 1245.68297 -0.39488 -0.00016436 1.4518 0.0006043 1.057 0.00043994 416.23552265972967 103.73 0.058762 107.26 107.21 107.27 3.5289 0.14865 0.00097029 NaN 5.7834 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 15605000 + 32834 27038 20925 20936 0.0699557969169291 QHKRITLYST 10 Unmodified _QHKRITLYST_ 0 0 0 REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense REV__L1MC4a_dup9884|chr20:41464277-41465774:+|1.016985139643642|0.2508365641283996|2.02|151.0|11|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 416.234933 1245.68297 0.08216 3.4198E-05 0.4017 0.0001672 0.48386 0.0002014 416.56948779643733 103.18 0.053963 106.89 106.84 106.9 3.7108 -0.22109 -0.00034101 NaN 5.7834 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2074500 + 32835 27038 20925 20936 0.0699557969169291 QHLAYSLLVVI 11 Unmodified _QHLAYSLLVVI_ 0 0 0 REV__ENSG00000169359|ENST00000643144|SLC33A1 REV__ENSG00000169359|ENST00000643144|SLC33A1 MULTI-MSMS UPN46_class_I_Rep_3 1 628.3740234375 2 628.374081 1254.73361 0.52625 0.00033068 -0.15175 -9.5353E-05 0.37451 0.00023533 628.3737930866461 34.122 0.086838 34.122 34.065 34.151 0 6 4 2 0 0 0 0.68196 1 6046 6046 0.35063 0 1 524700 + 32836 20311 20926 20937 37731 37731 0.11643109016699782 QHLLFPDILV 10 Unmodified _QHLLFPDILV_ 0 0 0 L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|198|1|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|198|1|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|198|1|anti-sense MSMS UPN48_class_I_Rep_1 5 597.8460083007812 2 597.847699 1193.68084 NaN NaN NaN NaN NaN NaN NaN 42.387 1 45.895 45.395 46.395 3.5079 0 0 0 0.53105 1 7833 7833 1.6526 0 1 32837 14806 20927 20938 37732 37732 0.09175150953888078 QHLLSLTRRA 10 Unmodified _QHLLSLTRRA_ 0 0 0 nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1 nc|ENSG00000166349|P15918-2|RAG1 nc|ENSG00000166349|P15918-2|RAG1 MULTI-MSMS UPN47_class_I_Rep_1 2 598.358154296875 2 597.856921 1193.69929 0.47067 0.0002814 -0.97571 -0.00058334 -0.50504 -0.00030194 597.856267254569 86.431 0.18275 90.046 90.011 90.193 3.6153 40 24 2 0 0 0 0.56354 1 21589 21589 1.3295 1.3295 1 113460 32838 4235 20928 20939 37733 37733 0.11018705648461946 QHLMYMME 8 Unmodified _QHLMYMME_ 0 0 0 nc|ENSG00000288558|O95620-2|DUS4L;ENST00000485825.1_1_7:107215546-107218002:+|nuORF;ENSG00000105865|ENST00000265720|DUS4L nc|ENSG00000288558|O95620-2|DUS4L nc|ENSG00000288558|O95620-2|DUS4L MSMS UPN47_class_I_Rep_1 2 541.764404296875 2 541.727023 1081.43949 NaN NaN NaN NaN NaN NaN NaN 25.04 1 28.79 28.29 29.29 3.7495 0 0 0 0.40604 1 3373 3373 2.5775 0 1 32839 1766 20929 20940 37734 37734 -0.09796867340719473 QHLPFCKVFY 10 Unmodified _QHLPFCKVFY_ 0 0 0 L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense MSMS UPN47_class_I_Rep_1 2 641.3273315429688 2 641.326076 1280.6376 NaN NaN NaN NaN NaN NaN NaN 50.772 1 54.4 53.9 54.9 3.6285 0 0 0 0.53105 1 11162 11162 6.2058 0 1 32840 14361 20930 20941 37735 37735 0.00850637904954965 QHLPFCKVFY 10 Unmodified _QHLPFCKVFY_ 0 0 0 L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense MSMS UPN47_class_I_Rep_2 3 641.3273315429688 2 641.326076 1280.6376 NaN NaN NaN NaN NaN NaN NaN 51.165 1 54.503 54.003 55.003 3.3386 0 0 0 0.53105 1 11310 11310 3.2813 0 1 32841 14361 20930 20941 37736 37736 0.00850637904954965 QHLPFCKVFY 10 Unmodified _QHLPFCKVFY_ 0 0 0 L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|360|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 641.3285522460938 2 641.326076 1280.6376 0.55252 0.00035435 1.6309 0.001046 2.1834 0.0014003 641.3271947716001 51.146 0.4201 54.362 54.131 54.552 3.2163 23 19 2 0 0 0 0.54466 1 11355 11355 6.2058 0.9089 1 58233 32842 14361 20930 20941 37737 37737 0.00850637904954965 QHLWWEWY 8 Unmodified _QHLWWEWY_ 0 0 0 nc|ENSG00000184908|P51801-2|CLCNKB;nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA;ENSG00000184908|ENST00000375679|CLCNKB nc|ENSG00000184908|P51801-2|CLCNKB nc|ENSG00000184908|P51801-2|CLCNKB MULTI-MSMS UPN47_class_I_Rep_2 3 624.2854614257812 2 624.285266 1246.55598 0.045525 2.8421E-05 0.79865 0.00049859 0.84418 0.00052701 624.2858605837652 35.031 0.52891 38.456 38.196 38.725 3.4253 54 38 2 0 0 0 0.82752 1 6348 6348 0.69038 0.16561 1 112480 32843 5071 20931 20942 37738 37738 -0.05743721462636131 QHMKFNNPFYF 11 Unmodified _QHMKFNNPFYF_ 0 0 0 nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18 nc|ENSG00000155034|Q96ME1-3|FBXL18 nc|ENSG00000155034|Q96ME1-3|FBXL18 MSMS UPN46_class_I_Rep_3 1 491.5662536621094 3 491.564173 1471.67069 NaN NaN NaN NaN NaN NaN NaN 19.929 1 19.929 19.429 20.429 0 0 0 0 0.38417 1 1984 1984 1.2148 0.20126 1 32844 3689 20932 20943 37739 37739 -0.04627780043006169 QHPLLSRLR 9 Unmodified _QHPLLSRLR_ 0 0 0 LTR13_dup393|chr19:9775763-9776770:+|1.561380039333799|0.1532288463359854|3.35|151.0|29|3|sense LTR13_dup393|chr19:9775763-9776770:+|1.561380039333799|0.1532288463359854|3.35|151.0|29|3|sense LTR13_dup393|chr19:9775763-9776770:+|1.561380039333799|0.1532288463359854|3.35|151.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3406372070312 2 560.340907 1118.66726 0.63485 0.00035573 -1.6506 -0.00092493 -1.0158 -0.0005692 560.3399296640494 95.292 0.12292 98.767 98.736 98.859 3.4753 18 16 2 0 0 0 0.50088 1 23462 23462 0.52476 0 1 202160 32845 15565 20933 20944 37740 37740 0.11267337965296065 QHQPYGPLQI 10 Unmodified _QHQPYGPLQI_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS UPN47_class_I_Rep_1 2 590.8092041015625 2 590.809105 1179.60366 0.31412 0.00018559 0.027228 1.6086E-05 0.34135 0.00020167 590.8090540678112 53.132 0.73019 56.66 56.276 57.007 3.5278 82 45 2 0 0 0 0.54822 2 11852 11852;11936 5.7319 0 1 210760 + 32846 18059 20934 20945 37741;37742 37741 0.021039327375547145 QHQPYGPLQI 10 Unmodified _QHQPYGPLQI_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS UPN47_class_I_Rep_3 4 590.8101196289062 2 590.809105 1179.60366 0.48046 0.00028386 -0.12629 -7.4611E-05 0.35418 0.00020925 590.8090077705137 53.567 0.92709 56.762 56.426 57.353 3.1948 89 55 2 0 0 0 0.52083 2 12152 12152;12175 9.3831 0.63772 1 160540 + 32847 18059 20934 20945 37743;37744 37743 0.021039327375547145 QHQPYGPLQI 10 Unmodified _QHQPYGPLQI_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MULTI-MSMS UPN48_class_I_Rep_2 6 590.8089599609375 2 590.809105 1179.60366 0.54706 0.00032321 0.14429 8.5246E-05 0.69135 0.00040846 590.809098780147 53.244 0.74525 56.854 56.498 57.243 3.6098 106 47 3 0 0 0 0.54822 1 11071 11071 5.7319 0.43497 1 341930 + 32848 18059 20934 20945 37745 37745 0.021039327375547145 QHRKVHPV 8 Unmodified _QHRKVHPV_ 0 0 0 ENSG00000187987|ENST00000289788|ZSCAN23 ENSG00000187987|ENST00000289788|ZSCAN23 ENSG00000187987|ENST00000289788|ZSCAN23 MSMS UPN47_class_I_Rep_3 4 500.7943115234375 2 500.793592 999.572632 NaN NaN NaN NaN NaN NaN NaN 34.979 1 38.243 37.743 38.743 3.2639 0 0 0 0.40738 1 6423 6423 0.79363 0.10326 1 32849 5214 20935 20946 37746 37746 0.07282824213984895 QHRPAAAR 8 Unmodified _QHRPAAAR_ 0 0 0 REV__ENSG00000148357|ENST00000683500|HMCN2 REV__ENSG00000148357|ENST00000683500|HMCN2 MSMS UPN46_class_I_Rep_3 1 453.740966796875 2 453.754467 905.494381 NaN NaN NaN NaN NaN NaN NaN 12.934 1 12.934 12.434 13.434 0 0 0 0 0.40625 1 249 249 2.3027 0 1 + 32850 19586 20936 20947 37747 37747 0.03785391628741763 QHRSFYFHIS 10 Unmodified _QHRSFYFHIS_ 0 0 0 ENST00000540630.5_1_10:69869429-69881263:+|nuORF ENST00000540630.5_1_10:69869429-69881263:+|nuORF ENST00000540630.5_1_10:69869429-69881263:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 440.7994689941406 3 441.219395 1320.63635 0.14838 6.5466E-05 1.4674 0.00064744 1.6158 0.00071291 441.5544259908586 61.127 0.21778 64.64 64.463 64.681 3.5129 24 19 2 0 0 0 0.84575 1 13495 13495 0.69767 0 1 39406 32851 7353 20937 20948 37748 37748 -0.011138601395487058 QHRTPLTFP 9 Unmodified _QHRTPLTFP_ 0 0 0 ENST00000559314.5_1_14:23767304-23767721:-|nuORF ENST00000559314.5_1_14:23767304-23767721:-|nuORF ENST00000559314.5_1_14:23767304-23767721:-|nuORF MSMS UPN48_class_I_Rep_3 7 548.7965087890625 2 548.79854 1095.58253 NaN NaN NaN NaN NaN NaN NaN 41.918 1 45.563 45.063 46.063 3.6458 0 0 0 0.38916 1 7626 7626 3.2813 0.54611 1 32852 7447 20938 20949 37749 37749 0.03855967428717122 QHSGRQRQV 9 Unmodified _QHSGRQRQV_ 0 0 0 AluSz_dup41217|chr7:128536025-128536319:-|1.0645929543562112|0.0106129590090114|6.65|151.0|1|1|sense AluSz_dup41217|chr7:128536025-128536319:-|1.0645929543562112|0.0106129590090114|6.65|151.0|1|1|sense AluSz_dup41217|chr7:128536025-128536319:-|1.0645929543562112|0.0106129590090114|6.65|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 548.2919311523438 2 548.291945 1094.56934 NaN NaN NaN NaN NaN NaN NaN 79.69 1 83.323 82.823 83.823 3.6331 0 0 0 0.38784 1 18942 18942 3.5965 1.019 1 32853 349 20939 20950 37750 37750 0.02583529369326243 QHSHNNNTEK 10 Unmodified _QHSHNNNTEK_ 0 0 0 REV__nc|ENSG00000034677|Q9NV58-3|RNF19A REV__nc|ENSG00000034677|Q9NV58-3|RNF19A MSMS UPN48_class_I_Rep_1 5 604.7750854492188 2 604.773782 1207.53301 NaN NaN NaN NaN NaN NaN NaN 16.591 1 20.113 19.613 20.613 3.5217 0 0 0 0.53105 1 838 838 0 0 1 + 32854 17633 20940 20951 37751 37751 -0.06245392318078302 QHSQLITY 8 Unmodified _QHSQLITY_ 0 0 0 REV__L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|67|1|anti-sense REV__L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|67|1|anti-sense MSMS UPN48_class_I_Rep_2 6 495.2543029785156 2 495.256174 988.497795 NaN NaN NaN NaN NaN NaN NaN 74.123 1 77.701 77.201 78.201 3.5779 0 0 0 0.39819 1 17433 17433 8.5933 3.3626 1 + 32855 26213 20941 20952 37752 37752 0.0030859689209137287 QHSVHIIL 8 Unmodified _QHSVHIIL_ 0 0 0 REV__MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|94|3|anti-sense REV__MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|94|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.282470703125 2 473.777077 945.5396 -0.2205 -0.00010447 3.9734 0.0018825 3.7529 0.001778 473.7760364255519 20.528 0.18703 20.528 20.402 20.589 0 24 17 3 0 0 0 0.82752 1 2152 2152 2.5775 0 1 38556 + 32856 31883 20942 20953 37753 37753 0.06465197371289833 QHVDFGLQFS 10 Unmodified _QHVDFGLQFS_ 0 0 0 MLT1C_dup8093|chr7:76587657-76588127:-|2.21306163595932|0.1477954996835693|3.9|151.0|14|2|sense MLT1C_dup8093|chr7:76587657-76588127:-|2.21306163595932|0.1477954996835693|3.9|151.0|14|2|sense MLT1C_dup8093|chr7:76587657-76588127:-|2.21306163595932|0.1477954996835693|3.9|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 589.2838134765625 2 589.285463 1176.55637 NaN NaN NaN NaN NaN NaN NaN 71.732 1 75.198 74.698 75.698 3.466 0 0 0 0.53105 1 16791 16791 8.7454 1.4562 1 32857 16318 20943 20954 37754 37754 -0.024843465334242865 QHVSETWLY 9 Unmodified _QHVSETWLY_ 0 0 0 LTR18C_dup36|chr7:104963815-104964157:-|1.097774443126469|0.0326863377936859|5.07|151.0|14|1|anti-sense LTR18C_dup36|chr7:104963815-104964157:-|1.097774443126469|0.0326863377936859|5.07|151.0|14|1|anti-sense LTR18C_dup36|chr7:104963815-104964157:-|1.097774443126469|0.0326863377936859|5.07|151.0|14|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.7806396484375 2 581.780013 1161.54547 -0.042504 -2.4728E-05 0.2726 0.00015859 0.2301 0.00013387 581.7800800259877 39.071 2.2732 42.309 41.864 44.137 3.2379 351 154 4 0 0 0 0.43153 1 7566 7566 6.2058 0 1 595250 32858 15583 20944 20955 37755 37755 -0.028837489076977363 QHWLWERQK 9 Unmodified _QHWLWERQK_ 0 0 0 ENST00000393389.7_1_11:82924119-82924311:+|nuORF ENST00000393389.7_1_11:82924119-82924311:+|nuORF ENST00000393389.7_1_11:82924119-82924311:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 437.56243896484375 3 437.563273 1309.66799 -0.47416 -0.00020747 -0.96653 -0.00042292 -1.4407 -0.00063039 437.56281196321714 47.126 0.29918 50.478 50.243 50.543 3.3515 30 19 2 0 0 0 0.49676 1 10071 10071 0.96228 0.26461 1 43784 32859 6535 20945 20956 37756 37756 0.025541326143411425 QIAKKFHK 8 Unmodified _QIAKKFHK_ 0 0 0 REV__Tigger4_dup987|chr10:96851442-96852134:+|1.4299996236717656|0.006758416734969|7.73|151.0|3|1|sense REV__Tigger4_dup987|chr10:96851442-96852134:+|1.4299996236717656|0.006758416734969|7.73|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 500.52886962890625 2 500.308544 998.602535 NaN NaN NaN NaN NaN NaN NaN 31.896 1 35.537 35.037 36.037 3.641 0 0 0 0.40746 1 4857 4857 0.69038 0 1 + 32860 32794 20946 20957 37757 37757 0.10317763159321203 QIAKQTTKK 9 Unmodified _QIAKQTTKK_ 0 0 0 REV__L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|146|3|sense REV__L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|146|3|sense MSMS UPN48_class_I_Rep_3 7 523.303955078125 2 523.321848 1044.62914 NaN NaN NaN NaN NaN NaN NaN 79.77 1 83.412 82.912 83.912 3.6423 0 0 0 0.38916 1 18919 18919 3.2813 0 1 + 32861 29000 20947 20958 37758 37758 0.10861407259994849 QIAKRSKHRK 10 Unmodified _QIAKRSKHRK_ 0 0 0 Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 626.389404296875 2 626.391462 1250.76837 0.68676 0.00043018 2.614 0.0016374 3.3007 0.0020676 626.391229659634 108.25 0.09861 108.25 108.19 108.29 0 15 10 2 0 0 0 0.55148 1 26467 26467 5.2969 0.39987 1 4438100 32862 15492 20948 20959 37759 37759 0.15301789668023957 QIAKRSKHRK 10 Unmodified _QIAKRSKHRK_ 0 0 0 Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3927001953125 2 626.391462 1250.76837 NaN NaN NaN NaN NaN NaN NaN 103.72 1 107.34 106.84 107.84 3.6209 0 0 0 0.53105 1 25007 25007 6.2058 0.9089 1 32863 15492 20948 20959 37760 37760 0.15301789668023957 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.83544921875 2 548.834926 1095.6553 0.39588 0.00021727 0.73945 0.00040584 1.1353 0.00062311 549.3368883796286 108.9 0.93713 108.9 108.7 109.64 0 196 71 4 0 0 0 0.40174 1 26944 26944 7.9102 0 1 85366000 32864 9712 20949 20960 37761 37761 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8351440429688 2 548.834926 1095.6553 0.39528 0.00021694 0.54557 0.00029943 0.94085 0.00051637 548.8351095591978 110.2 0.24641 110.2 110.11 110.36 0 50 21 3 0 0 0 0.33654 2 27150 27111;27150 11.64 1.5664 1 1935700 32865 9712 20949 20960 37762;37763 37763 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MSMS UPN46_class_I_Rep_3 1 548.835205078125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 108.76 1 108.76 108.26 109.26 0 0 0 0 0.28335 1 26620 26620 11.64 0.14559 1 32866 9712 20949 20960 37764 37764 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.8358764648438 2 548.834926 1095.6553 0.53981 0.00029627 0.38495 0.00021127 0.92476 0.00050754 548.8349899260429 108.71 0.43741 112.34 112.18 112.62 3.6355 174 44 5 0 0 0 0.40174 2 26687 26687;26738 7.9102 0.62092 1 204330000 32867 9712 20949 20960 37765;37766 37765 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.83544921875 2 548.834926 1095.6553 0.53984 0.00029628 0.17654 9.6894E-05 0.71638 0.00039318 548.8348505252652 109.26 0.87868 112.86 112.76 113.64 3.6046 252 115 3 0 0 0 0.26948 2 26997 26997;27034 15.847 4.2069 1 4788500 32868 9712 20949 20960 37767;37768 37767 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 548.83544921875 2 548.834926 1095.6553 0.6161 0.00033813 0.31601 0.00017344 0.93211 0.00051157 548.8349661461621 109.34 0.91927 112.87 112.69 113.61 3.5307 251 127 3 0 0 0 0.26948 3 26690 26615;26657;26690 15.847 4.2069 1 11419000 32869 9712 20949 20960 37769;37770;37771 37771 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.835205078125 2 548.834926 1095.6553 0.4962 0.00027233 0.38752 0.00021268 0.88372 0.00048502 548.835097395549 109.28 0.29784 112.82 112.7 113 3.5347 105 40 3 0 0 0 0.33654 2 26884 26842;26884 11.64 4.9171 1 9677500 32870 9712 20949 20960 37772;37773 37773 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.835205078125 2 548.834926 1095.6553 0.49628 0.00027237 0.46995 0.00025792 0.96622 0.0005303 548.834948049885 109.52 0.6478 113.05 112.99 113.64 3.5347 159 92 3 0 0 0 0.20276 1 26915 26915 20.454 5.6154 1 2259800 32871 9712 20949 20960 37774 37774 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.83544921875 2 548.834926 1095.6553 0.46306 0.00025414 0.41193 0.00022608 0.87499 0.00048022 548.8349790753412 108.71 0.60485 112.34 112.17 112.77 3.6321 260 72 4 0 0 0 0.40174 2 26278 26278;26466 7.9102 1.187 1 123170000 32872 9712 20949 20960 37775;37776 37775 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.83544921875 2 548.834926 1095.6553 0.46334 0.0002543 0.30392 0.0001668 0.76726 0.0004211 548.8348927790342 109.29 0.43436 112.92 112.77 113.2 3.6321 145 54 4 0 0 0 0.33654 1 26578 26578 11.64 1.5664 1 3864600 32873 9712 20949 20960 37777 37777 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.8350219726562 2 548.834926 1095.6553 0.48912 0.00026845 0.38348 0.00021047 0.8726 0.00047891 548.8348846123579 109.25 0.84949 112.92 112.8 113.65 3.6715 264 112 3 0 0 0 0.33654 1 26053 26053 11.64 1.5664 1 4923100 32874 9712 20949 20960 37778 37778 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.8351440429688 2 548.834926 1095.6553 0.43465 0.00023855 0.29895 0.00016408 0.7336 0.00040263 548.8349201733058 109.24 0.84178 112.92 112.81 113.65 3.6751 220 117 2 0 0 0 0.26948 1 25990 25990 15.847 5.7733 1 5455200 32875 9712 20949 20960 37779 37779 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_3 7 548.835205078125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 108.86 1 112.54 112.04 113.04 3.6751 0 0 0 0.28335 1 25815 25815 11.64 1.5664 1 32876 9712 20949 20960 37780 37780 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 548.8348999023438 2 548.834926 1095.6553 0.43281 0.00023754 0.52138 0.00028615 0.95419 0.00052369 548.8350481406629 108.68 0.63696 112.36 112.22 112.86 3.6751 197 74 4 0 0 0 0.11598 1 25862 25862 11.64 1.5664 1 122290000 32877 9712 20949 20960 37781 37781 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 548.834926 1095.6553 0.53984 0.00029628 0.17654 9.6894E-05 0.71638 0.00039318 548.8348505252652 109.26 0.87868 112.86 112.76 113.64 3.6046 -0.023515 -0.00011037 NaN 15.847 252 115 3 NaN NaN NaN NaN 0 NaN NaN 0 4788500 32878 9712 20949 20960 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 548.834926 1095.6553 0.6161 0.00033813 0.31601 0.00017344 0.93211 0.00051157 548.8349661461621 109.34 0.91927 112.87 112.69 113.61 3.5307 -0.018683 4.2724E-05 NaN 15.847 251 127 3 NaN NaN NaN NaN 0 NaN NaN 0 11419000 32879 9712 20949 20960 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 548.834926 1095.6553 0.4962 0.00027233 0.38752 0.00021268 0.88372 0.00048502 548.835097395549 109.28 0.29784 112.82 112.7 113 3.5347 -0.065662 0.00012121 NaN 15.847 105 40 3 NaN NaN NaN NaN 0 NaN NaN 0 9677500 32880 9712 20949 20960 0.11129721222141598 QIAVVPKWR 9 Unmodified _QIAVVPKWR_ 0 0 0 L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense L1MA4_dup6793|chr10:63243674-63244691:+|2.4270760485299494|0.0288378359770051|6.4|151.0|60|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 548.834926 1095.6553 0.46334 0.0002543 0.30392 0.0001668 0.76726 0.0004211 548.8348927790342 109.29 0.43436 112.92 112.77 113.2 3.6321 0.036725 2.9446E-05 NaN 15.847 145 54 4 NaN NaN NaN NaN 0 NaN NaN 0 3864600 32881 9712 20949 20960 0.11129721222141598 QICKLYLV 8 Unmodified _QICKLYLV_ 0 0 0 REV__L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|19|1|sense REV__L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|19|1|sense MSMS UPN46_class_I_Rep_3 1 490.285400390625 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 70.282 1 70.282 69.782 70.782 0 0 0 0 0.40746 1 16144 16144 0.69038 0 1 + 32882 25624 20950 20961 37782 37782 0.06708776581911025 QICKLYLV 8 Unmodified _QICKLYLV_ 0 0 0 REV__L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|19|1|sense REV__L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|19|1|sense MSMS UPN47_class_I_Rep_2 3 490.28582763671875 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 51.314 1 54.652 54.152 55.152 3.3386 0 0 0 0.40746 1 11356 11356 0.69038 0 1 + 32883 25624 20950 20961 37783 37783 0.06708776581911025 QICWTASIVIL 11 Unmodified _QICWTASIVIL_ 0 0 0 REV__L1ME1_dup28020|chr17:82547620-82548605:-|1.3718733179792972|0.0188943812057022|6.18|150.0|21|2|sense REV__L1ME1_dup28020|chr17:82547620-82548605:-|1.3718733179792972|0.0188943812057022|6.18|150.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 416.235107421875 3 416.233653 1245.67913 NaN NaN NaN NaN NaN NaN NaN 103.76 1 107.53 107.03 108.03 3.7627 0 0 0 0.35398 1 25508 25508 4.4062 0.81348 1 + 32884 27723 20951 20962 37784 37784 0.06611773873623861 QICWTASIVIL 11 Unmodified _QICWTASIVIL_ 0 0 0 REV__L1ME1_dup28020|chr17:82547620-82548605:-|1.3718733179792972|0.0188943812057022|6.18|150.0|21|2|sense REV__L1ME1_dup28020|chr17:82547620-82548605:-|1.3718733179792972|0.0188943812057022|6.18|150.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 416.2350158691406 3 416.233653 1245.67913 NaN NaN NaN NaN NaN NaN NaN 103.42 1 107.13 106.63 107.63 3.7108 0 0 0 0.35398 1 24481 24481 4.4062 0.81348 1 + 32885 27723 20951 20962 37785 37785 0.06611773873623861 QIDALAKKLK 10 Unmodified _QIDALAKKLK_ 0 0 0 nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8 nc|ENSG00000124721|Q96JB1-2|DNAH8 nc|ENSG00000124721|Q96JB1-2|DNAH8 MSMS UPN47_class_I_Rep_2 3 564.3588256835938 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 81.939 1 85.323 84.823 85.823 3.3839 0 0 0 0.53105 1 20420 20420 0.35063 0 1 32886 2483 20952 20963 37786 37786 0.14910839845219925 QIDALSGVIT 10 Unmodified _QIDALSGVIT_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MSMS UPN47_class_I_Rep_2 3 508.8028259277344 2 508.784764 1015.55498 NaN NaN NaN NaN NaN NaN NaN 30.784 1 34.266 33.766 34.766 3.4821 0 0 0 0.53105 1 5123 5123 13.906 0 1 32887 5369 20953 20964 37787 37787 0.04782019377819324 QIDGIVHF 8 Unmodified _QIDGIVHF_ 0 0 0 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 MULTI-MSMS UPN47_class_I_Rep_2 3 464.7480773925781 2 464.747985 927.481417 0.077577 3.6054E-05 -0.22716 -0.00010557 -0.14958 -6.9517E-05 464.747686005665 55.763 0.50706 59.074 58.861 59.368 3.3102 36 30 2 0 0 0 0.82752 1 12712 12712 5.7604 1.0044 1 62529 32888 3101 20954 20965 37788 37788 0.014775157260032756 QIDGIVHF 8 Unmodified _QIDGIVHF_ 0 0 0 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 MSMS UPN47_class_I_Rep_3 4 464.7480773925781 2 464.747985 927.481417 NaN NaN NaN NaN NaN NaN NaN 55.819 1 58.997 58.497 59.497 3.1779 0 0 0 0.40364 1 12786 12786 5.7604 1.0044 1 32889 3101 20954 20965 37789 37789 0.014775157260032756 QIDGIVHF 8 Unmodified _QIDGIVHF_ 0 0 0 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 ENSG00000138663|ENST00000264389|COPS4 MSMS UPN47_class_I_Rep_3 4 464.7475891113281 2 464.747985 927.481417 NaN NaN NaN NaN NaN NaN NaN 55.974 1 59.152 58.652 59.652 3.1779 0 0 0 0.40364 1 12833 12833 5.7604 1.0044 1 32890 3101 20954 20965 37790 37790 0.014775157260032756 QIEEETYKY 9 Unmodified _QIEEETYKY_ 0 0 0 REV__HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|222|3|anti-sense REV__HUERS-P3b-int_dup27|chr1:169815820-169818679:-|1.4103691402074945|0.3199577315670198|2.14|151.0|222|3|anti-sense MSMS UPN47_class_I_Rep_2 3 601.7815551757812 2 601.782418 1201.55028 NaN NaN NaN NaN NaN NaN NaN 37.557 1 40.955 40.455 41.455 3.3988 0 0 0 0.38784 1 7175 7175 3.5965 0 1 + 32891 23982 20955 20966 37791 37791 -0.0424290955561446 QIEGNKKY 8 Unmodified _QIEGNKKY_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS UPN46_class_I_Rep_3 1 490.2639465332031 2 490.263999 978.513445 -0.047996 -2.3531E-05 -0.033572 -1.6459E-05 -0.081569 -3.999E-05 490.2639304503681 26.26 0.49407 26.26 26.09 26.585 0 61 43 2 0 0 0 0.82752 1 3788 3788 10.824 0.75 1 79796 32892 5345 20956 20967 37792 37792 0.023328834091330464 QIFKNQKF 8 Unmodified _QIFKNQKF_ 0 0 0 L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 526.7733154296875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 27.628 1 31.394 30.894 31.894 3.7662 0 0 0 0.40746 1 4139 4139 0.69038 0 1 32893 8689 20957 20968 37793 37793 0.05773753059793307 QIFKNQKF 8 Unmodified _QIFKNQKF_ 0 0 0 L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense MSMS UPN47_class_I_Rep_3 4 526.7968139648438 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.64 1 26.99 26.49 27.49 3.3509 0 0 0 0.40746 1 3041 3041 0.69038 0 1 32894 8689 20957 20968 37794 37794 0.05773753059793307 QIFKNQKF 8 Unmodified _QIFKNQKF_ 0 0 0 L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|32|2|sense MSMS UPN48_class_I_Rep_3 7 526.7977294921875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.029 1 23.651 23.151 24.151 3.6215 0 0 0 0.40746 1 1625 1625 0.69038 0 1 32895 8689 20957 20968 37795 37795 0.05773753059793307 QIFRNPAL 8 Unmodified _QIFRNPAL_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|257|1|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|257|1|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|257|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.77679443359375 2 479.777077 957.5396 0.021028 1.0089E-05 0.079652 3.8215E-05 0.10068 4.8304E-05 479.77703340177266 46.926 0.66231 50.278 50.023 50.685 3.3515 62 47 2 0 0 0 0.82752 1 10052 10052 2.5775 0 1 146900 32896 8239 20958 20969 37796 37796 0.05913197371273782 QIGKTHIGF 9 Unmodified _QIGKTHIGF_ 0 0 0 REV__L1ME3D_dup2557|chrX:119639469-119639806:-|2.432375763546258|0.0379732652771253|6.0|151.0|24|2|anti-sense REV__L1ME3D_dup2557|chrX:119639469-119639806:-|2.432375763546258|0.0379732652771253|6.0|151.0|24|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.78173828125 2 500.782359 999.550165 -0.026349 -1.3195E-05 -0.16352 -8.189E-05 -0.18987 -9.5085E-05 500.78220867107296 26.47 0.71399 26.47 26.227 26.94 0 83 61 2 0 0 0 0.48643 1 3896 3896 2.0598 0.21551 1 87098 + 32897 28143 20959 20970 37797 37797 0.050371800257153154 QIGKWLVFG 9 Unmodified _QIGKWLVFG_ 0 0 0 REV__ENSG00000081177|ENST00000685843|EXD2 REV__ENSG00000081177|ENST00000685843|EXD2 MSMS UPN48_class_I_Rep_1 5 524.3053588867188 2 524.302927 1046.5913 NaN NaN NaN NaN NaN NaN NaN 63.836 1 67.293 66.793 67.793 3.4578 0 0 0 0.39428 1 14403 14403 2.0598 0 1 + 32898 17911 20960 20971 37798 37798 0.06986941065179053 QIGREKVKLP 10 Unmodified _QIGREKVKLP_ 0 0 0 L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|151|3|sense L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|151|3|sense L1PA10_dup1558|chr4:25285843-25291183:-|1.0113047358368834|0.3446104288695438|1.55|151.0|151|3|sense MSMS UPN47_class_I_Rep_3 4 584.7606201171875 2 584.364047 1166.71354 NaN NaN NaN NaN NaN NaN NaN 52.073 1 55.278 54.778 55.778 3.2055 0 0 0 0.53105 1 11642 11642 3.5965 1.2938 1 32899 13590 20961 20972 37799 37799 0.13685358076759258 QIHILPLLA 9 Unmodified _QIHILPLLA_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MULTI-SECPEP UPN46_class_I_Rep_3 1 509.8037109375 2 509.326402 1016.63825 0.30634 0.00015603 -0.25755 -0.00013118 0.04879 2.485E-05 509.3261973654788 81.846 0.04747 81.846 81.815 81.863 0 6 4 2 0 0 0 0.12321 1 19349 19349 3.9444 2.7511 1 44624 + 32900 20543 20962 20973 37800 37800 0.1305980061632681 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2855529785156 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.31 1 57.825 57.325 58.325 3.5143 0 0 0 0.40604 1 11487 11487 2.5775 0.51773 1 32901 14032 20963 20974 37801 37801 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2863464355469 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.677 1 58.187 57.687 58.687 3.5105 0 0 0 0.40604 1 11599 11599 2.5775 0.27475 1 32902 14032 20963 20974 37802 37802 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 484.7882080078125 2 485.285069 968.555585 0.23667 0.00011485 4.2542 0.0020645 4.4909 0.0021794 485.28615685782603 57.381 0.30952 60.875 60.683 60.992 3.4942 39 26 2 0 0 0 0.72333 1 12408 12408 2.5775 1.7838 1 90406 32903 14032 20963 20974 37803 37803 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.285888671875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 52.05 1 55.689 55.189 56.189 3.639 0 0 0 0.40604 1 10781 10781 2.5775 0.51773 1 32904 14032 20963 20974 37804 37804 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.2848815917969 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 53.925 1 57.506 57.006 58.006 3.5817 0 0 0 0.40604 1 11348 11348 2.5775 0 1 32905 14032 20963 20974 37805 37805 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.28631591796875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.498 1 58.08 57.58 58.58 3.5817 0 0 0 0.40604 1 11525 11525 2.5775 0.51773 1 32906 14032 20963 20974 37806 37806 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2846374511719 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 51.132 1 54.743 54.243 55.243 3.6105 0 0 0 0.40604 1 10447 10447 2.5775 0 1 32907 14032 20963 20974 37807 37807 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.28631591796875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 51.625 1 55.235 54.735 55.735 3.6105 0 0 0 0.40604 1 10598 10598 2.5775 0 1 32908 14032 20963 20974 37808 37808 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2860412597656 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 51.972 1 55.57 55.07 56.07 3.5979 0 0 0 0.40604 1 10696 10696 2.5775 0.27475 1 32909 14032 20963 20974 37809 37809 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2860107421875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 52.231 1 55.829 55.329 56.329 3.5979 0 0 0 0.40604 1 10771 10771 2.5775 0.27475 1 32910 14032 20963 20974 37810 37810 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.285400390625 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 53.88 1 57.463 56.963 57.963 3.5836 0 0 0 0.40604 1 11272 11272 2.5775 0.51773 1 32911 14032 20963 20974 37811 37811 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.28564453125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 53.967 1 57.551 57.051 58.051 3.5836 0 0 0 0.40604 1 11299 11299 2.5775 0.27475 1 32912 14032 20963 20974 37812 37812 0.07004903608185487 QIHLVRGF 8 Unmodified _QIHLVRGF_ 0 0 0 L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.28533935546875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.348 1 57.917 57.417 58.417 3.5694 0 0 0 0.40604 1 11417 11417 2.5775 0.27475 1 32913 14032 20963 20974 37813 37813 0.07004903608185487 QIIFRFRIFYK 11 Unmodified _QIIFRFRIFYK_ 0 0 0 L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.96856689453125 3 510.96964 1529.88709 NaN NaN NaN NaN NaN NaN NaN 97.136 1 100.91 100.41 101.41 3.7767 0 0 0 0.38417 1 24076 24076 0.50596 0.051438 1 32914 11479 20964 20975 37814 37814 0.1433414385303422 QIIFRFRIFYK 11 Unmodified _QIIFRFRIFYK_ 0 0 0 L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense MSMS UPN47_class_I_Rep_2 3 510.96893310546875 3 510.96964 1529.88709 NaN NaN NaN NaN NaN NaN NaN 97.417 1 100.9 100.4 101.4 3.4836 0 0 0 0.38417 1 23917 23917 0.50596 0.051438 1 32915 11479 20964 20975 37815 37815 0.1433414385303422 QIIFRFRIFYK 11 Unmodified _QIIFRFRIFYK_ 0 0 0 L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 510.96893310546875 3 510.96964 1529.88709 0.32065 0.00016384 -1.751 -0.0008947 -1.4303 -0.00073085 510.96856350255166 97.44 0.23227 100.92 100.86 101.09 3.4836 40 33 2 0 0 0 22.551 1 23917 23917 0.50596 0.41111 1 106350 32916 11479 20964 20975 37816 37816 0.1433414385303422 QIIFRFRIFYK 11 Unmodified _QIIFRFRIFYK_ 0 0 0 L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.96868896484375 3 510.96964 1529.88709 0.32059 0.00016381 -1.6023 -0.00081875 -1.2818 -0.00065494 510.9685014136629 97.78 0.20204 101.56 101.52 101.72 3.779 34 27 2 0 0 0 0.68024 1 23255 23255 0.50596 0.051438 1 113250 32917 11479 20964 20975 37817 37817 0.1433414385303422 QIIFRFRIFYK 11 Unmodified _QIIFRFRIFYK_ 0 0 0 L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense L1MC4_dup24802|chr22:49860326-49860779:-|1.029119327177617|0.0291893995920026|5.14|151.0|38|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 510.96964 1529.88709 0.32027 0.00016365 -2.1837 -0.0011158 -1.8634 -0.00095213 511.30287753738355 97.885 0.059525 101.37 101.34 101.4 3.4836 0.023492 -0.00042904 NaN 0.50596 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 82576 32918 11479 20964 20975 0.1433414385303422 QIIGVPFNV 9 Unmodified _QIIGVPFNV_ 0 0 0 REV__ENST00000307968.11_1_5:131007642-131007714:-|nuORF REV__ENST00000307968.11_1_5:131007642-131007714:-|nuORF MSMS UPN48_class_I_Rep_2 6 493.7870178222656 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.29 1 112.96 112.46 113.46 3.6715 0 0 0 0.36505 1 26010 26010 7.2892 0 1 + 32919 21693 20965 20976 37818 37818 0.06630948311226348 QIIHSHYC 8 Unmodified _QIIHSHYC_ 0 0 0 L1ME3A_dup11521|chr13:21419300-21419810:+|1.6067230299541166|0.0134237587941191|6.9|151.0|28|2|anti-sense L1ME3A_dup11521|chr13:21419300-21419810:+|1.6067230299541166|0.0134237587941191|6.9|151.0|28|2|anti-sense L1ME3A_dup11521|chr13:21419300-21419810:+|1.6067230299541166|0.0134237587941191|6.9|151.0|28|2|anti-sense MSMS UPN47_class_I_Rep_3 4 500.73614501953125 2 500.737094 999.459635 NaN NaN NaN NaN NaN NaN NaN 114 1 117.49 116.99 117.99 3.4963 0 0 0 0.40746 1 27978 27978 0.69038 0 1 32920 12624 20966 20977 37819 37819 -0.04011612294232236 QIIIAMWT 8 Unmodified _QIIIAMWT_ 0 0 0 REV__L1MCa_dup1561|chr4:2683593-2684136:-|1.128520034978159|0.016888311859283|6.06|151.0|1|1|sense REV__L1MCa_dup1561|chr4:2683593-2684136:-|1.128520034978159|0.016888311859283|6.06|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 488.2888488769531 2 488.270238 974.525924 NaN NaN NaN NaN NaN NaN NaN 31.219 1 31.219 30.719 31.719 0 0 0 0 0.40625 1 5187 5187 2.3027 0 1 + 32921 27190 20967 20978 37820 37820 0.03764203547814304 QIIIGYHG 8 Unmodified _QIIIGYHG_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MSMS UPN48_class_I_Rep_3 7 450.78765869140625 2 450.750527 899.486502 NaN NaN NaN NaN NaN NaN NaN 76.656 1 80.239 79.739 80.739 3.5831 0 0 0 0.40581 1 18061 18061 2.8892 0 1 32922 3532 20968 20979 37821 37821 0.03273819588616789 QIILDPLPHT 10 Unmodified _QIILDPLPHT_ 0 0 0 L1M4a2_dup1810|chr17:60241607-60242108:-|1.2888777246451124|0.0242271996990059|5.73|151.0|15|3|sense L1M4a2_dup1810|chr17:60241607-60242108:-|1.2888777246451124|0.0242271996990059|5.73|151.0|15|3|sense L1M4a2_dup1810|chr17:60241607-60242108:-|1.2888777246451124|0.0242271996990059|5.73|151.0|15|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 573.8295288085938 2 573.829506 1145.64446 0.45278 0.00025982 -0.07945 -4.559E-05 0.37333 0.00021423 573.8293911816048 74.254 0.29225 74.254 74.199 74.491 0 58 33 2 0 0 0 0.55148 1 17227 17227 5.2969 0.39987 1 809970 32923 8972 20969 20980 37822 37822 0.07746274057171831 QIILDPLPHT 10 Unmodified _QIILDPLPHT_ 0 0 0 L1M4a2_dup1810|chr17:60241607-60242108:-|1.2888777246451124|0.0242271996990059|5.73|151.0|15|3|sense L1M4a2_dup1810|chr17:60241607-60242108:-|1.2888777246451124|0.0242271996990059|5.73|151.0|15|3|sense L1M4a2_dup1810|chr17:60241607-60242108:-|1.2888777246451124|0.0242271996990059|5.73|151.0|15|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 573.7589721679688 2 573.829506 1145.64446 0.3281 0.00018828 -0.11236 -6.4478E-05 0.21574 0.0001238 573.8295602666904 68.233 0.43691 71.598 71.471 71.908 3.3646 45 33 2 0 0 0 0.84575 1 16519 16519 2.9952 0.26005 1 92261 32924 8972 20969 20980 37823 37823 0.07746274057171831 QIIPRLVMKI 10 Unmodified _QIIPRLVMKI_ 0 0 0 HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_3 7 404.2629699707031 3 404.261655 1209.76313 NaN NaN NaN NaN NaN NaN NaN 70.284 1 73.797 73.297 74.297 3.5128 0 0 0 0.53105 1 16254 16254 0.77653 0.36827 1 32925 7887 20970 20981 37824 37824 0.16664349761185804 QIIRKFYSR 9 Unmodified _QIIRKFYSR_ 0 0 0 REV__L1ME4c_dup8132|chr18:77059103-77059326:+|1.0804725956262624|0.01893408779848|5.83|151.0|8|3|sense REV__L1ME4c_dup8132|chr18:77059103-77059326:+|1.0804725956262624|0.01893408779848|5.83|151.0|8|3|sense MSMS UPN46_class_I_Rep_3 1 404.2489318847656 3 404.240018 1209.69823 NaN NaN NaN NaN NaN NaN NaN 41.022 1 41.022 40.522 41.522 0 0 0 0 0.3824 1 8007 8007 4.897 0.70751 1 + 32926 28325 20971 20982 37825 37825 0.10176491279548827 QIIRKFYSR 9 Unmodified _QIIRKFYSR_ 0 0 0 REV__L1ME4c_dup8132|chr18:77059103-77059326:+|1.0804725956262624|0.01893408779848|5.83|151.0|8|3|sense REV__L1ME4c_dup8132|chr18:77059103-77059326:+|1.0804725956262624|0.01893408779848|5.83|151.0|8|3|sense MSMS UPN46_class_I_Rep_3 1 404.2406005859375 3 404.240018 1209.69823 NaN NaN NaN NaN NaN NaN NaN 41.133 1 41.133 40.633 41.633 0 0 0 0 0.35904 1 8035 8035 7.609 3.7326 1 + 32927 28325 20971 20982 37826 37826 0.10176491279548827 QIIRKLSK 8 Unmodified _QIIRKLSK_ 0 0 0 HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|63|2|sense HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|63|2|sense HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|63|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.3299865722656 2 493.329476 984.6444 -0.32586 -0.00016076 0.15299 7.5474E-05 -0.17287 -8.5282E-05 493.3294878421377 20.945 0.74136 24.589 24.252 24.994 3.6436 140 80 2 0 0 0 0.82752 1 2114 2114 2.0598 0 1 143820 32928 7936 20972 20983 37827 37827 0.1514631884784876 QIIRTLQL 8 Unmodified _QIIRTLQL_ 0 0 0 nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17;nc|ENSG00000132972|Q9BXT8-2|RNF17;nc|ENSG00000132972|Q9BXT8-1|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-MSMS UPN48_class_I_Rep_3 7 492.8136291503906 2 492.813659 983.612765 0.1683 8.2938E-05 0.1082 5.3322E-05 0.27649 0.00013626 492.8136279319391 57.454 0.98745 60.986 60.445 61.432 3.5317 218 86 3 0 0 0 0.82752 1 12348 12348 49.933 2.201 1 1177700 32929 2785 20973 20984 37828 37828 0.12030326093906751 QIITLVFQLLQ 11 Unmodified _QIITLVFQLLQ_ 0 0 0 REV__nc|ENSG00000012660|Q9NYP7-2|ELOVL5 REV__nc|ENSG00000012660|Q9NYP7-2|ELOVL5 MULTI-SECPEP UPN48_class_I_Rep_1 5 439.5748291015625 3 439.270984 1314.79112 0.00023625 1.0378E-07 0.8169 0.00035884 0.81713 0.00035894 439.2711802915437 37.662 0.28393 41.167 41.057 41.341 3.5052 56 27 3 0 0 0 22.551 1 6467 6467 1.3296 0.55311 1 167060 + 32930 17585 20974 20985 37829 37829 0.14631951222281714 QIITLVFQLLQ 11 Unmodified _QIITLVFQLLQ_ 0 0 0 REV__nc|ENSG00000012660|Q9NYP7-2|ELOVL5 REV__nc|ENSG00000012660|Q9NYP7-2|ELOVL5 MULTI-MSMS UPN48_class_I_Rep_3 7 439.27154541015625 3 439.270984 1314.79112 0.049804 2.1878E-05 0.89955 0.00039515 0.94935 0.00041702 439.27123332398014 35.116 0.19331 38.788 38.691 38.884 3.6721 30 20 2 0 0 0 0.67113 1 5646 5646 1.3296 0.55311 1 98262 + 32931 17585 20974 20985 37830 37830 0.14631951222281714 QIKEQLEALH 10 Unmodified _QIKEQLEALH_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP MSMS UPN48_class_I_Rep_3 7 604.83447265625 2 604.83532 1207.65609 NaN NaN NaN NaN NaN NaN NaN 43.558 1 47.196 46.696 47.696 3.6385 0 0 0 0.53105 1 8120 8120 5.2969 2.5617 1 + 32932 20638 20975 20986 37831 37831 0.060564710805238064 QIKKDTPP 8 Unmodified _QIKKDTPP_ 0 0 0 REV__MER2_dup6346|chr11:86057612-86057938:+|1.7902418392944657|0.0293379983944495|5.93|151.0|13|1|anti-sense REV__MER2_dup6346|chr11:86057612-86057938:+|1.7902418392944657|0.0293379983944495|5.93|151.0|13|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 463.7682189941406 2 463.768917 925.523281 0.21023 9.7498E-05 -0.94572 -0.0004386 -0.73549 -0.0003411 463.76839378033935 107.77 0.13081 111.44 111.37 111.5 3.6724 20 11 3 0 0 0 0.82752 1 26408 26408 4.756 0 1 6137800 + 32933 31147 20976 20987 37832 37832 0.057540714145034144 QIKKILWC 8 Unmodified _QIKKILWC_ 0 0 0 REV__L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|56|2|sense REV__L1M1_dup8236|chr14:66578143-66581223:+|1.124894866733705|0.0331282142178256|5.09|150.0|56|2|sense MSMS UPN47_class_I_Rep_3 4 516.3080444335938 2 516.307155 1030.59976 NaN NaN NaN NaN NaN NaN NaN 40.701 1 43.938 43.438 44.438 3.2372 0 0 0 0.40746 1 8180 8180 0.69038 0 1 + 32934 24152 20977 20988 37833 37833 0.08568171710157912 QIKKNLQI 8 Unmodified _QIKKNLQI_ 0 0 0 L1MC5a_dup8123|chr8:53823774-53825209:+|1.0376094785003296|0.0160145400662561|6.02|151.0|12|1|sense L1MC5a_dup8123|chr8:53823774-53825209:+|1.0376094785003296|0.0160145400662561|6.02|151.0|12|1|sense L1MC5a_dup8123|chr8:53823774-53825209:+|1.0376094785003296|0.0160145400662561|6.02|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 492.8137512207031 2 492.813659 983.612765 0.37123 0.00018295 -0.12421 -6.1214E-05 0.24701 0.00012173 492.8135258391344 57.626 0.76826 61.14 60.869 61.638 3.5142 130 55 3 0 0 0 0.82752 1 12431 12431 44.407 2.5674 1 1326800 32935 11766 20978 20989 37834 37834 0.12030326093884014 QIKLHKRRKNK 11 Unmodified _QIKLHKRRKNK_ 0 0 0 L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|105|3|sense L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|105|3|sense L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|105|3|sense MSMS UPN47_class_I_Rep_2 3 483.6471252441406 3 483.647671 1447.92118 NaN NaN NaN NaN NaN NaN NaN 47.719 1 51.069 50.569 51.569 3.3492 0 0 0 0.38417 1 10257 10257 0.094841 0 1 32936 14920 20979 20990 37835 37835 0.21513985064598273 QIKPLTKSRF 10 Unmodified _QIKPLTKSRF_ 0 0 0 MER92B_dup77|chr2:112095949-112096538:+|1.4206492793401369|0.2546851397579492|2.48|151.0|12|2|sense MER92B_dup77|chr2:112095949-112096538:+|1.4206492793401369|0.2546851397579492|2.48|151.0|12|2|sense MER92B_dup77|chr2:112095949-112096538:+|1.4206492793401369|0.2546851397579492|2.48|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 406.5836486816406 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 104.95 1 108.49 107.99 108.99 3.5308 0 0 0 0.53105 1 25715 25715 0.62683 0 1 32937 16233 20980 20991 37836 37836 0.1294964459377752 QIKQKVDSL 9 Unmodified _QIKQKVDSL_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;ENST00000556181.1_1_14:58988389-58988443:+|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MULTI-MSMS UPN47_class_I_Rep_1 2 529.8131103515625 2 529.813856 1057.61316 -0.12999 -6.8868E-05 0.7071 0.00037463 0.57712 0.00030576 529.8143180215461 23.288 0.53901 26.993 26.66 27.199 3.7042 71 49 2 0 0 0 0.43153 1 2798 2798 6.2058 0 1 72915 32938 1388 20981 20992 37837 37837 0.0866570102307378 QIKQKVDSL 9 Unmodified _QIKQKVDSL_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;ENST00000556181.1_1_14:58988389-58988443:+|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MULTI-MSMS UPN47_class_I_Rep_2 3 530.315673828125 2 529.813856 1057.61316 -0.1765 -9.3514E-05 0.44101 0.00023365 0.26451 0.00014014 529.8141757233494 23.483 0.53922 26.927 26.613 27.153 3.4447 84 49 2 0 0 0 0.38714 2 2932 2932;2966 8.7454 1.1365 1 88161 32939 1388 20981 20992 37838;37839 37838 0.0866570102307378 QIKRLLCPKV 10 Unmodified _QIKRLLCPKV_ 0 0 0 REV__AluJb_dup91929|chr14:45206294-45206590:-|1.1311139320655432|0.3201172451224219|1.82|151.0|9|3|sense REV__AluJb_dup91929|chr14:45206294-45206590:-|1.1311139320655432|0.3201172451224219|1.82|151.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 599.3811645507812 2 599.378643 1196.74273 NaN NaN NaN NaN NaN NaN NaN 95.395 1 99.16 98.66 99.66 3.7648 0 0 0 0.53105 1 23682 23682 3.5965 0.60125 1 + 32940 16974 20982 20993 37840 37840 0.15223179101371898 QIKRTLFIIN 10 Unmodified _QIKRTLFIIN_ 0 0 0 MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|51|2|anti-sense MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|51|2|anti-sense MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 623.3885498046875 2 623.387522 1244.76049 0.59275 0.00036951 0.30476 0.00018998 0.8975 0.00055949 623.3876056476042 108.66 0.48726 112.34 112.26 112.75 3.6751 117 53 3 0 0 0 0.53004 1 25828 25828 8.1555 0.54658 1 22689000 32941 16168 20983 20994 37841 37841 0.14790217627887614 QIKSKVSGKIK 11 Unmodified _QIKSKVSGKIK_ 0 0 0 L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|44|3|sense L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|44|3|sense L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|44|3|sense MSMS UPN47_class_I_Rep_2 3 405.932373046875 3 405.930962 1214.77106 NaN NaN NaN NaN NaN NaN NaN 34.233 1 37.672 37.172 38.172 3.4398 0 0 0 0.38417 1 6166 6166 1.2148 0 1 32942 11800 20984 20995 37842 37842 0.17226200282311765 QIKSTIIIEI 10 Unmodified _QIKSTIIIEI_ 0 0 0 HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|167|1|anti-sense;HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|143|1|anti-sense;HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|134|1|anti-sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|167|1|anti-sense HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|167|1|anti-sense MSMS UPN46_class_I_Rep_3 1 579.3609619140625 2 579.360639 1156.70673 NaN NaN NaN NaN NaN NaN NaN 109.38 1 109.38 108.88 109.88 0 0 0 0 0.53105 1 26852 26852 8.7454 0 1 32943 8317 20985 20996 37843 37843 0.13464000405519982 QIKYLKKQY 9 Unmodified _QIKYLKKQY_ 0 0 0 REV__L1ME3D_dup1942|chr7:149483630-149484870:+|1.491725387620763|0.1779877131540281|3.07|151.0|11|1|sense REV__L1ME3D_dup1942|chr7:149483630-149484870:+|1.491725387620763|0.1779877131540281|3.07|151.0|11|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.361328125 2 606.360973 1210.70739 0.34379 0.00020846 0.34253 0.00020769 0.68632 0.00041616 606.3609336938547 29.947 0.099203 29.947 29.875 29.974 0 12 9 2 0 0 0 0.50088 1 4806 4806 0.52476 0 1 135720 + 32944 28141 20986 20997 37844 37844 0.11046839845243994 QILELKIKLD 10 Unmodified _QILELKIKLD_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|73|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|73|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|73|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 404.5888671875 3 404.923585 1211.74892 0.052788 2.1375E-05 -0.26891 -0.00010889 -0.21612 -8.7512E-05 404.92341871854785 41.546 0.16334 41.546 41.414 41.577 0 19 15 2 0 0 0 0.84575 1 8147 8147 2.8433 0 1 132150 32945 8523 20987 20998 37845 37845 0.15151975813864738 QILERATYY 9 Unmodified _QILERATYY_ 0 0 0 REV__nc|ENSG00000136492|Q9BX63-2|BRIP1 REV__nc|ENSG00000136492|Q9BX63-2|BRIP1 MULTI-MSMS UPN47_class_I_Rep_2 3 578.8035888671875 2 578.803488 1155.59242 0.51642 0.0002989 -0.3605 -0.00020866 0.15592 9.0246E-05 578.8035473770982 52.795 3.0567 56.122 55.611 58.667 3.3266 650 200 5 0 0 0 0.10817 1 12445 12445 32.305 0 1 21678000 + 32946 19185 20988 20999 37846 37846 0.020851106434292888 QILFFHYMY 9 Unmodified _QILFFHYMY_ 0 0 0 REV__L1PA5_dup8076|chr11:14777676-14783773:+|13.054731108778045|0.3480131190219975|5.23|151.0|249|2|anti-sense REV__L1PA5_dup8076|chr11:14777676-14783773:+|13.054731108778045|0.3480131190219975|5.23|151.0|249|2|anti-sense MSMS UPN47_class_I_Rep_1 2 631.3050537109375 2 631.307352 1260.60015 NaN NaN NaN NaN NaN NaN NaN 40.192 1 43.859 43.359 44.359 3.6668 0 0 0 0.40038 1 7943 7943 0.6015 0 1 + 32947 29800 20989 21000 37847 37847 -0.019724533606449768 QILFFTTYIC 10 Unmodified _QILFFTTYIC_ 0 0 0 REV__L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|168|3|anti-sense REV__L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|168|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 416.8824462890625 3 416.88262 1247.62603 -0.97873 -0.00040802 0.79313 0.00033064 -0.1856 -7.7372E-05 416.8828393305065 26.28 0.32305 29.774 29.571 29.894 3.4945 41 28 2 0 0 0 0.56333 1 3753 3753 0.62683 0 1 34725 + 32948 29017 20990 21001 37848 37848 0.012123960909775633 QILPIKSC 8 Unmodified _QILPIKSC_ 0 0 0 REV__L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|12|2|sense REV__L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 451.262939453125 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 116.78 1 120.4 119.9 120.9 3.6254 0 0 0 0.40625 1 28446 28446 2.3027 0 1 + 32949 28026 20991 21002 37849 37849 0.05603917030782668 QILYDLII 8 Unmodified _QILYDLII_ 0 0 0 L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|23|1|sense;L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|19|1|sense L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|23|1|sense L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 495.79693603515625 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 82.944 1 86.281 85.781 86.781 3.337 0 0 0 0.40364 1 20796 20796 5.7604 0 1 32950 9993 20992 21003 37850 37850 0.0845269925117691 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS UPN46_class_I_Rep_3 1 531.8170776367188 2 531.817364 1061.62018 0.3275 0.00017417 -0.78713 -0.00041861 -0.45964 -0.00024444 531.8168467544335 82.581 0.514 82.581 82.091 82.605 0 86 45 3 0 0 0 0.82752 1 19453 19453 0.69038 0 1 522570 32951 4228 20993 21004 37851 37851 0.09183019098304612 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MSMS UPN46_class_I_Rep_3 1 531.81640625 2 531.817364 1061.62018 NaN NaN NaN NaN NaN NaN NaN 81.611 1 81.611 81.111 82.111 0 0 0 0 0.40604 1 19282 19282 2.5775 0 1 32952 4228 20993 21004 37852 37852 0.09183019098304612 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MSMS UPN46_class_I_Rep_3 1 531.8175048828125 2 531.817364 1061.62018 NaN NaN NaN NaN NaN NaN NaN 82.054 1 82.054 81.554 82.554 0 0 0 0 0.40746 1 19415 19415 0.69038 0 1 32953 4228 20993 21004 37853 37853 0.09183019098304612 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS UPN47_class_I_Rep_2 3 531.8172607421875 2 531.817364 1061.62018 0.32665 0.00017372 -0.42842 -0.00022784 -0.10177 -5.4121E-05 531.8170820660202 79.338 0.58247 82.694 82.285 82.867 3.3554 89 54 2 0 0 0 0.82752 1 19749 19749 0.69038 0 1 110460 32954 4228 20993 21004 37854 37854 0.09183019098304612 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS UPN47_class_I_Rep_2 3 531.816650390625 2 531.817364 1061.62018 0.33446 0.00017787 -0.31733 -0.00016876 0.017124 9.1071E-06 531.8170511313647 79.597 0.56979 82.952 82.771 83.341 3.3554 109 64 3 0 0 0 0.82752 1 19927 19927 0.69038 0 1 218240 32955 4228 20993 21004 37855 37855 0.09183019098304612 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS UPN48_class_I_Rep_1 5 531.8169555664062 2 531.817364 1061.62018 0.35293 0.0001877 -0.457 -0.00024304 -0.10407 -5.5347E-05 531.8170550533144 79.208 0.62198 82.744 82.241 82.863 3.5352 104 72 2 0 0 0 0.82752 1 18909 18909 0.69038 0 1 245470 32956 4228 20993 21004 37856 37856 0.09183019098304612 QIMKMRKK 8 Unmodified _QIMKMRKK_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS UPN48_class_I_Rep_2 6 531.8172607421875 2 531.817364 1061.62018 0.42407 0.00022553 -0.61332 -0.00032617 -0.18924 -0.00010064 531.8169741544821 79.084 0.68842 82.718 82.168 82.856 3.6331 100 80 2 0 0 0 0.82752 1 18804 18804 0.69038 0 1 203620 32957 4228 20993 21004 37857 37857 0.09183019098304612 QIMKMRPK 8 Unmodified _QIMKMRPK_ 0 0 0 ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1 ENSG00000198742|ENST00000361368|SMURF1 ENSG00000198742|ENST00000361368|SMURF1 MSMS UPN46_class_I_Rep_3 1 516.2970581054688 2 516.296265 1030.57798 NaN NaN NaN NaN NaN NaN NaN 83.396 1 83.396 82.896 83.896 0 0 0 0 0.40746 1 19807 19807 0.69038 0 1 32958 5454 20994 21005 37858 37858 0.06391043689927756 QINKTYILLG 10 Unmodified _QINKTYILLG_ 0 0 0 L1PA7_dup10415|chr12:62367491-62368962:-|2.2395689980859013|0.1219502533121194|4.2|151.0|10|1|sense L1PA7_dup10415|chr12:62367491-62368962:-|2.2395689980859013|0.1219502533121194|4.2|151.0|10|1|sense L1PA7_dup10415|chr12:62367491-62368962:-|2.2395689980859013|0.1219502533121194|4.2|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 581.8425903320312 2 581.845156 1161.67576 NaN NaN NaN NaN NaN NaN NaN 88.906 1 92.529 92.029 93.029 3.6229 0 0 0 0.53105 1 21333 21333 1.1933 0.59184 1 32959 14703 20995 21006 37859 37859 0.10138847091252501 QINLKRKMKH 10 Unmodified _QINLKRKMKH_ 0 0 0 L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 432.8849182128906 3 432.595808 1294.76559 -0.068767 -2.9748E-05 1.7853 0.00077231 1.7165 0.00074256 432.93159253545525 101.35 0.21471 104.96 104.87 105.09 3.612 47 30 3 0 0 0 0.84575 1 24471 24471 0.69767 0 1 136470 32960 12350 20996 21007 37860 37860 0.13000198218833248 QINLKRKMKH 10 Unmodified _QINLKRKMKH_ 0 0 0 L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 432.595808 1294.76559 0.13914 6.019E-05 3.8102 0.0016483 3.9493 0.0017085 432.5972868960758 105.05 0.02623 105.05 105.03 105.05 0 0.12136 0.00059842 NaN 0.69767 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 94813 32961 12350 20996 21007 0.13000198218833248 QINLKRKMKH 10 Unmodified _QINLKRKMKH_ 0 0 0 L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 432.595808 1294.76559 0.13881 6.005E-05 4.0313 0.0017439 4.1701 0.001804 432.9318927738912 101.16 0.025551 104.96 104.94 104.96 3.7942 0.03179 0.0008854 NaN 0.69767 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 75908 32962 12350 20996 21007 0.13000198218833248 QINLKRKMKH 10 Unmodified _QINLKRKMKH_ 0 0 0 L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense L1ME1_dup27128|chr16:89349913-89350736:+|1.985970363342444|0.0221565219316658|6.49|151.0|24|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 432.595808 1294.76559 0.093814 4.0584E-05 3.3626 0.0014546 3.4564 0.0014952 432.5972761934208 101.17 0.058807 104.91 104.88 104.94 3.7416 -0.014966 1.7499E-05 NaN 0.69767 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 90885 32963 12350 20996 21007 0.13000198218833248 QINQRQESL 9 Unmodified _QINQRQESL_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS UPN47_class_I_Rep_2 3 558.7957763671875 2 558.293819 1114.57309 0.047234 2.6371E-05 -0.083448 -4.6589E-05 -0.036214 -2.0218E-05 558.293782811209 23.795 0.44019 27.26 27.086 27.526 3.4655 43 36 2 0 0 0 0.47763 1 3046 3046 2.9952 2.9952 1 53666 32964 1983 20997 21008 37861 37861 0.02038154352521815 QINVIEDKR 9 Unmodified _QINVIEDKR_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MSMS UPN48_class_I_Rep_1 5 557.814453125 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 101.04 1 104.65 104.15 105.15 3.6089 0 0 0 0.39598 1 24394 24394 1.6526 0 1 32965 1105 20998 21009 37862 37862 0.061959153919815435 QINVKSKTV 9 Unmodified _QINVKSKTV_ 0 0 0 L1ME3B_dup2500|chr5:103162663-103164530:-|1.1262614832525857|0.0214478188709726|5.71|151.0|73|3|sense L1ME3B_dup2500|chr5:103162663-103164530:-|1.1262614832525857|0.0214478188709726|5.71|151.0|73|3|sense L1ME3B_dup2500|chr5:103162663-103164530:-|1.1262614832525857|0.0214478188709726|5.71|151.0|73|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 508.8088073730469 2 508.808574 1015.60259 0.22154 0.00011272 -0.35536 -0.00018081 -0.13382 -6.8089E-05 508.80837238608524 55.586 0.57166 58.897 58.756 59.327 3.3102 41 34 2 0 0 0 0.38714 1 12669 12669 8.7454 0 1 118580 32966 12704 20999 21010 37863 37863 0.09541718368654983 QIPTHLQL 8 Unmodified _QIPTHLQL_ 0 0 0 L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|10|1|sense L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|10|1|sense L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 475.277099609375 2 475.276909 948.539266 NaN NaN NaN NaN NaN NaN NaN 43.704 1 47.466 46.966 47.966 3.7617 0 0 0 0.38444 1 8245 8245 13.906 0.39817 1 32967 14679 21000 21011 37864 37864 0.06293777651421806 QIQIRPPN 8 Unmodified _QIQIRPPN_ 0 0 0 REV__L1MC5a_dup10792|chr10:87889858-87890717:-|1.930499491956884|0.0459483681829405|5.39|151.0|7|1|sense REV__L1MC5a_dup10792|chr10:87889858-87890717:-|1.930499491956884|0.0459483681829405|5.39|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 483.2787780761719 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 114.73 1 118.38 117.88 118.88 3.6511 0 0 0 0.40746 1 27290 27290 0.69038 0 1 + 32968 27107 21001 21012 37865 37865 0.061722958829250274 QIQKRAVK 8 Unmodified _QIQKRAVK_ 0 0 0 nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28 nc|ENSG00000106344|Q9NW13-2|RBM28 nc|ENSG00000106344|Q9NW13-2|RBM28 MSMS UPN47_class_I_Rep_2 3 485.8113098144531 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 45.71 1 49.063 48.563 49.563 3.3534 0 0 0 0.40625 1 9658 9658 2.3027 0.4585 1 32969 1783 21002 21013 37866 37866 0.12232861670986495 QIQLAYVL 8 Unmodified _QIQLAYVL_ 0 0 0 L1M5_dup37551|chr11:76037124-76037381:+|1.2420526822467295|0.0048807342149732|7.99|151.0|14|1|anti-sense L1M5_dup37551|chr11:76037124-76037381:+|1.2420526822467295|0.0048807342149732|7.99|151.0|14|1|anti-sense L1M5_dup37551|chr11:76037124-76037381:+|1.2420526822467295|0.0048807342149732|7.99|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_3 4 474.2825927734375 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 21.075 1 24.424 23.924 24.924 3.3496 0 0 0 0.40604 1 2295 2295 2.5775 0.51773 1 32970 9151 21003 21014 37867 37867 0.07335545936939525 QIQQRMKKLIH 11 Unmodified _QIQQRMKKLIH_ 0 0 0 L1PA5_dup4657|chr6:109598087-109604210:-|1.2901113174854062|0.1942471809425144|2.73|151.0|145|3|sense L1PA5_dup4657|chr6:109598087-109604210:-|1.2901113174854062|0.1942471809425144|2.73|151.0|145|3|sense L1PA5_dup4657|chr6:109598087-109604210:-|1.2901113174854062|0.1942471809425144|2.73|151.0|145|3|sense MSMS UPN48_class_I_Rep_1 5 474.9515686035156 3 474.950251 1421.82892 NaN NaN NaN NaN NaN NaN NaN 102.81 1 106.42 105.92 106.92 3.6164 0 0 0 0.38417 1 24782 24782 0.50596 0.051438 1 32971 14475 21004 21015 37868 37868 0.13488138936099858 QIREFNLL 8 Unmodified _QIREFNLL_ 0 0 0 ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1 ENST00000525971.6_1_12:85431954-85518298:+|nuORF ENST00000525971.6_1_12:85431954-85518298:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 516.8137817382812 2 516.795466 1031.57638 0.21433 0.00011077 0.35947 0.00018577 0.57381 0.00029654 516.7957181359149 60.232 0.90914 63.397 63.06 63.969 3.1651 129 64 3 0 0 0 0.72333 1 14026 14026 2.0598 0 1 226180 32972 2809 21005 21016 37869 37869 0.06185449197187154 QIRIKYWVY 9 Unmodified _QIRIKYWVY_ 0 0 0 REV__L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|68|1|anti-sense REV__L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_3 7 634.8595581054688 2 634.861141 1267.70773 NaN NaN NaN NaN NaN NaN NaN 106.56 1 110.25 109.75 110.75 3.6899 0 0 0 0.40038 1 25126 25126 0.6015 0 1 + 32973 26467 21006 21017 37870 37870 0.08458259565054504 QIRRFPCC 8 Unmodified _QIRRFPCC_ 0 0 0 L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|59|3|sense L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|59|3|sense L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|59|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 511.2685852050781 2 511.754764 1021.49497 0.35657 0.00018248 -1.1279 -0.00057719 -0.77129 -0.00039471 511.7540861171929 64.696 0.080421 68.175 68.157 68.238 3.4792 5 4 2 0 0 0 0.72333 1 14642 14642 2.8892 0.58649 1 60973 32974 14931 21007 21018 37871 37871 -0.014912730380729045 QITNETASI 9 Unmodified _QITNETASI_ 0 0 0 nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO nc|ENSG00000067445|Q12816-2|TRO nc|ENSG00000067445|Q12816-2|TRO MULTI-MSMS UPN47_class_I_Rep_2 3 488.7506408691406 2 488.750921 975.48729 -0.12713 -6.2134E-05 0.81213 0.00039693 0.68501 0.0003348 488.7510077871482 27.373 0.47632 30.871 30.624 31.101 3.4986 69 37 2 0 0 0 0.44742 1 4166 4166 5.2969 0.54088 1 94179 32975 1033 21008 21019 37872 37872 -0.0014343055299832486 QIVDKEMFF 9 Unmodified _QIVDKEMFF_ 0 0 0 L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|34|2|sense L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|34|2|sense L1MC5_dup11757|chr14:30903699-30905081:+|1.6949862138296297|0.417377281309203|2.02|151.0|34|2|sense MSMS UPN47_class_I_Rep_3 4 578.8036499023438 2 578.788992 1155.56343 NaN NaN NaN NaN NaN NaN NaN 53.791 1 56.986 56.486 57.486 3.1948 0 0 0 0.22485 1 12162 12162 14.838 0.93222 1 32976 11661 21009 21020 37873 37873 -0.008127499772172087 QIVETRLKKH 10 Unmodified _QIVETRLKKH_ 0 0 0 REV__ENSG00000155827|ENST00000389120|RNF20 REV__ENSG00000155827|ENST00000389120|RNF20 MULTI-SECPEP UPN46_class_I_Rep_3 1 625.7535400390625 2 626.380229 1250.7459 0.68663 0.00043009 -0.12343 -7.7315E-05 0.5632 0.00035278 626.380110227482 103.77 0.055679 103.77 103.74 103.79 0 9 4 3 0 0 0 0.84575 1 25321 25321 0.40072 0 1 292000 + 32977 19774 21010 21021 37874 37874 0.1305614547973164 QIVLHFSV 8 Unmodified _QIVLHFSV_ 0 0 0 LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.77337646484375 2 471.774003 941.533452 0.054791 2.5849E-05 -1.4695 -0.00069329 -1.4147 -0.00066744 471.77319662295525 109.01 0.1347 112.55 112.52 112.66 3.5382 20 13 2 0 0 0 0.82752 1 26763 26763 4.756 0 1 6739700 32978 15496 21011 21022 37875 37875 0.06034679139747823 QIVLHFSV 8 Unmodified _QIVLHFSV_ 0 0 0 LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 471.774003 941.533452 0.2274 0.00010728 -1.2277 -0.00057919 -1.0003 -0.00047191 471.77333882687867 108.93 0.14163 112.54 112.45 112.59 3.6046 -0.13974 -5.1566E-05 NaN 4.756 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 13849000 32979 15496 21011 21022 0.06034679139747823 QIVLHFSV 8 Unmodified _QIVLHFSV_ 0 0 0 LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 471.774003 941.533452 0.084519 3.9874E-05 -1.0047 -0.00047399 -0.92017 -0.00043411 471.7733013990396 109.28 0.14918 112.92 112.88 113.03 3.6321 0.24161 0.00015885 NaN 4.756 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 845960 32980 15496 21011 21022 0.06034679139747823 QIVLHFSV 8 Unmodified _QIVLHFSV_ 0 0 0 LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense LOR1-int_dup1119|chr15:43171927-43172887:-|1.1926858031967895|0.1259923430574229|3.24|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 471.774003 941.533452 0.20625 9.7305E-05 -1.0761 -0.00050769 -0.86988 -0.00041039 471.7732093556135 109.03 0.15957 112.7 112.61 112.77 3.6751 0.027972 9.1437E-05 NaN 4.756 29 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3686600 32981 15496 21011 21022 0.06034679139747823 QIVVLAAR 8 Unmodified _QIVVLAAR_ 0 0 0 L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|305|2|anti-sense L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|305|2|anti-sense L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|305|2|anti-sense MSMS UPN46_class_I_Rep_3 1 435.24786376953125 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 46.991 1 46.991 46.491 47.491 0 0 0 0 0.40625 1 9679 9679 2.3027 0.4585 1 32982 14880 21012 21023 37876 37876 0.10990385376658196 QIVVLAAR 8 Unmodified _QIVVLAAR_ 0 0 0 L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|305|2|anti-sense L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|305|2|anti-sense L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|305|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 434.8819580078125 2 435.281995 868.549437 -0.0063876 -2.7804E-06 -1.5168 -0.00066022 -1.5232 -0.000663 435.2815386301309 34.87 0.12628 38.384 38.307 38.433 3.5144 16 14 2 0 0 0 0.72333 1 5620 5620 2.3027 0.4585 1 53963 32983 14880 21012 21023 37877 37877 0.10990385376658196 QIVWLILQY 9 Unmodified _QIVWLILQY_ 0 0 0 L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|183|2|anti-sense L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|183|2|anti-sense L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|183|2|anti-sense MSMS UPN46_class_I_Rep_3 1 588.1133422851562 2 588.344792 1174.67503 NaN NaN NaN NaN NaN NaN NaN 60.736 1 60.736 60.236 61.236 0 0 0 0 0.2408 1 13486 13486 13.906 1.3745 1 32984 13988 21013 21024 37878 37878 0.09468052442230146 QIWFMYRIG 9 Unmodified _QIWFMYRIG_ 0 0 0 REV__L1ME3A_dup10993|chr12:29161236-29162328:-|1.423092395785832|0.0311215637270788|5.51|151.0|56|2|anti-sense REV__L1ME3A_dup10993|chr12:29161236-29162328:-|1.423092395785832|0.0311215637270788|5.51|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_2 3 405.2214660644531 3 405.211071 1212.61138 NaN NaN NaN NaN NaN NaN NaN 20.739 1 24.146 23.646 24.646 3.4074 0 0 0 0.39841 1 2205 2205 1.0715 0 1 + 32985 27983 21014 21025 37879 37879 0.013583687334858041 QIYKEKTPLK 10 Unmodified _QIYKEKTPLK_ 0 0 0 L1PA13_dup1191|chr3:11444571-11445695:+|3.7305111976521066|0.0538894147548366|6.11|151.0|3|1|sense L1PA13_dup1191|chr3:11444571-11445695:+|3.7305111976521066|0.0538894147548366|6.11|151.0|3|1|sense L1PA13_dup1191|chr3:11444571-11445695:+|3.7305111976521066|0.0538894147548366|6.11|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 624.8731689453125 2 624.371538 1246.72852 0.49407 0.00030848 0.14293 8.924E-05 0.637 0.00039772 624.873273907941 92.015 0.34362 95.778 95.542 95.886 3.7629 70 49 2 0 0 0 0.56333 1 21882 21882 1.4819 0.15237 1 1253400 32986 13731 21015 21026 37880 37880 0.11502805154077578 QKAHLARH 8 Unmodified _QKAHLARH_ 0 0 0 ENSG00000198346|ENST00000396403|ZNF813 ENSG00000198346|ENST00000396403|ZNF813 ENSG00000198346|ENST00000396403|ZNF813 MULTI-MSMS UPN47_class_I_Rep_3 4 480.7770690917969 2 480.777942 959.541332 -0.66276 -0.00031864 -1.1728 -0.00056388 -1.8356 -0.00088252 480.77738151023016 21.727 0.50122 25.076 24.842 25.343 3.3496 81 48 2 0 0 0 0.82752 1 2524 2524 0.69038 0 1 63502 32987 5427 21016 21027 37881 37881 0.05994251179879484 QKAKINRI 8 Unmodified _QKAKINRI_ 0 0 0 L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|22|2|sense L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|22|2|sense L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.512 1 73.723 73.223 74.223 3.2113 0 0 0 0.40746 1 17253 17253 0.69038 0 1 32988 12788 21017 21028 37882 37882 0.12232861670997863 QKARPRLFQ 9 Unmodified _QKARPRLFQ_ 0 0 0 ENST00000407450.1_1_6:118775621-118775846:-|nuORF ENST00000407450.1_1_6:118775621-118775846:-|nuORF ENST00000407450.1_1_6:118775621-118775846:-|nuORF MSMS UPN46_class_I_Rep_3 1 572.3399047851562 2 572.340907 1142.66726 NaN NaN NaN NaN NaN NaN NaN 96.726 1 96.726 96.226 97.226 0 0 0 0 0.4007 1 23522 23522 0.52476 0 1 32989 6617 21018 21029 37883 37883 0.10163337965309438 QKARPRLFQ 9 Unmodified _QKARPRLFQ_ 0 0 0 ENST00000407450.1_1_6:118775621-118775846:-|nuORF ENST00000407450.1_1_6:118775621-118775846:-|nuORF ENST00000407450.1_1_6:118775621-118775846:-|nuORF MSMS UPN47_class_I_Rep_2 3 572.3396606445312 2 572.340907 1142.66726 NaN NaN NaN NaN NaN NaN NaN 93.124 1 96.593 96.093 97.093 3.4687 0 0 0 0.4007 1 22993 22993 0.52476 0 1 32990 6617 21018 21029 37884 37884 0.10163337965309438 QKASLYPP 8 Unmodified _QKASLYPP_ 0 0 0 L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|18|1|sense L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|18|1|sense L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 452.26922607421875 2 452.25036 902.486168 NaN NaN NaN NaN NaN NaN NaN 78.601 1 78.601 78.101 79.101 0 0 0 0 0.40738 1 18417 18417 0.79363 0 1 32991 9564 21019 21030 37885 37885 0.03102399868748762 QKATGQKA 8 Unmodified _QKATGQKA_ 0 0 0 ENSG00000188846|ENST00000396203|RPL14 ENSG00000188846|ENST00000396203|RPL14 ENSG00000188846|ENST00000396203|RPL14 MSMS UPN46_class_I_Rep_3 1 416.2275695800781 2 416.237784 830.461016 NaN NaN NaN NaN NaN NaN NaN 61.743 1 61.743 61.243 62.243 0 0 0 0 0.40643 1 13761 13761 2.0598 0 1 32992 5258 21020 21031 37886 37886 0.03900345066176669 QKAYKPFV 8 Unmodified _QKAYKPFV_ 0 0 0 REV__ENSG00000175764|ENST00000321582|TTLL11 REV__ENSG00000175764|ENST00000321582|TTLL11 MSMS UPN47_class_I_Rep_1 2 490.7828063964844 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 28.76 1 32.526 32.026 33.026 3.7662 0 0 0 0.40746 1 4475 4475 0.69038 0 1 + 32993 20566 21021 21032 37887 37887 0.05850965656804874 QKCQCGPLI 9 Unmodified _QKCQCGPLI_ 0 0 0 REV__HERV17-int_dup348|chr5:34062502-34063274:-|1.3220745464953787|0.1678834657896567|2.98|151.0|2|1|sense REV__HERV17-int_dup348|chr5:34062502-34063274:-|1.3220745464953787|0.1678834657896567|2.98|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 495.2487487792969 2 495.24898 988.483407 -0.26812 -0.00013279 -0.40185 -0.00019902 -0.66997 -0.0003318 495.2487392208277 35.435 0.5744 39.111 38.87 39.445 3.6762 72 39 2 0 0 0 0.41259 1 6466 6466 7.2892 0 1 136910 + 32994 23551 21022 21033 37888 37888 -0.011295148520616749 QKDIKILNIY 10 Unmodified _QKDIKILNIY_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|186|3|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|186|3|sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|186|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 624.8750610351562 2 624.371538 1246.72852 0.60343 0.00037676 0.24612 0.00015367 0.84955 0.00053043 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.56309 1 21810 21810 1.6526 0 1 1749400 32995 15329 21023 21034 37889 37889 0.11502805154077578 QKDIRTSL 8 Unmodified _QKDIRTSL_ 0 0 0 L1MC4a_dup3233|chr5:135387800-135388839:+|1.4139116962360077|0.1484548122737673|3.25|151.0|32|3|sense L1MC4a_dup3233|chr5:135387800-135388839:+|1.4139116962360077|0.1484548122737673|3.25|151.0|32|3|sense L1MC4a_dup3233|chr5:135387800-135388839:+|1.4139116962360077|0.1484548122737673|3.25|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.77703857421875 2 480.777274 959.539994 -0.21521 -0.00010347 -0.49364 -0.00023733 -0.70885 -0.0003408 480.77703933511344 21.456 0.69851 24.88 24.61 25.308 3.4241 110 76 2 0 0 0 0.82752 1 2401 2401 1.8442 1.8442 1 59495 32996 11559 21024 21035 37890 37890 0.058605723004689025 QKDRYIIPLK 10 Unmodified _QKDRYIIPLK_ 0 0 0 L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|18|2|sense L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|18|2|sense L1MB4_dup5548|chr10:63423265-63424058:-|1.0919257094803676|0.0166129946834479|6.04|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 637.8751831054688 2 637.38498 1272.75541 NaN NaN NaN NaN NaN NaN NaN 102.71 1 106.48 105.98 106.98 3.776 0 0 0 0.53105 1 24270 24270 1.3295 0 1 32997 10533 21025 21036 37891 37891 0.12993913765262732 QKDVKRII 8 Unmodified _QKDVKRII_ 0 0 0 REV__ENST00000411556.2_1_9:44472681-44473188:+|nuORF REV__ENST00000411556.2_1_9:44472681-44473188:+|nuORF MSMS UPN47_class_I_Rep_1 2 500.3190002441406 2 500.319109 998.623664 NaN NaN NaN NaN NaN NaN NaN 17.04 1 20.562 20.062 21.062 3.5224 0 0 0 0.39819 1 1204 1204 8.5933 0 1 + 32998 20260 21026 21037 37892 37892 0.12429728468180201 QKEIPHVF 8 Unmodified _QKEIPHVF_ 0 0 0 L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|20|1|sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|20|1|sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.2772216796875 2 499.276909 996.539266 -0.25454 -0.00012709 0.079202 3.9544E-05 -0.17534 -8.7542E-05 499.27691436676673 39.598 0.79811 42.836 42.476 43.274 3.238 75 55 2 0 0 0 0.82752 1 7924 7924 0.79363 0 1 83326 32999 9896 21027 21038 37893 37893 0.04085777651414446 QKEKEFHT 8 Unmodified _QKEKEFHT_ 0 0 0 REV__ENST00000403017.2_1_2:135957914-136028945:-|nuORF REV__ENST00000403017.2_1_2:135957914-136028945:-|nuORF MSMS UPN47_class_I_Rep_3 4 523.7346801757812 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 115.32 1 118.8 118.3 119.3 3.4802 0 0 0 0.40659 1 28353 28353 1.8442 0 1 + 33000 18737 21028 21039 37894 37894 -0.0016801807919364364 QKEKRMKRI 9 Unmodified _QKEKRMKRI_ 0 0 0 L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|56|2|sense L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|56|2|sense L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|56|2|sense MSMS UPN46_class_I_Rep_3 1 406.24853515625 3 406.248408 1215.72339 NaN NaN NaN NaN NaN NaN NaN 86.832 1 86.832 86.332 87.332 0 0 0 0 0.39928 1 20774 20774 0.86438 0 1 33001 9971 21029 21040 37895 37895 0.12416222810497857 QKEQLRKP 8 Unmodified _QKEQLRKP_ 0 0 0 REV__ENST00000460031.5_1_1:43220834-43232642:-|nuORF REV__ENST00000460031.5_1_1:43220834-43232642:-|nuORF MSMS UPN47_class_I_Rep_1 2 513.807373046875 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 102.34 1 106.13 105.63 106.63 3.7888 0 0 0 0.40404 1 25195 25195 5.2307 0 1 + 33002 18632 21030 21041 37896 37896 0.08640253945759468 QKETRIFT 8 Unmodified _QKETRIFT_ 0 0 0 REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.7853698730469 2 511.785099 1021.55564 -0.20959 -0.00010726 0.26724 0.00013677 0.057655 2.9507E-05 511.7852530777206 28.149 0.65355 31.916 31.625 32.279 3.7662 68 51 2 0 0 0 0.82752 3 4260 4260;4286;4347 7.2892 0 1 99770 + 33003 24091 21031 21042 37897;37898;37899 37897 0.04572858817527958 QKETRIFT 8 Unmodified _QKETRIFT_ 0 0 0 REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.7845764160156 2 511.785099 1021.55564 -0.275 -0.00014074 0.21376 0.0001094 -0.061242 -3.1343E-05 511.78515823165054 28.264 0.86183 31.763 31.496 32.358 3.4986 89 71 2 0 0 0 0.82752 1 4338 4338 1.8442 0 1 99118 + 33004 24091 21031 21042 37900 37900 0.04572858817527958 QKETRIFT 8 Unmodified _QKETRIFT_ 0 0 0 REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.784912109375 2 511.785099 1021.55564 -0.38046 -0.00019471 0.092285 4.723E-05 -0.28818 -0.00014749 511.78515144500653 28.568 0.7831 31.902 31.626 32.409 3.3337 107 67 2 0 0 0 0.82752 3 4450 4450;4489;4620 7.2892 0 1 71516 + 33005 24091 21031 21042 37901;37902;37903 37901 0.04572858817527958 QKETRIFT 8 Unmodified _QKETRIFT_ 0 0 0 REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense REV__L1M1_dup4307|chr8:67241646-67243239:+|1.283105762249769|0.0381793268140285|5.07|150.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 511.785099 1021.55564 -0.275 -0.00014074 0.21376 0.0001094 -0.061242 -3.1343E-05 511.78515823165054 28.264 0.86183 31.763 31.496 32.358 3.4986 -0.097044 3.6153E-05 NaN 7.2892 89 71 2 NaN NaN NaN NaN 0 NaN NaN 0 99118 + 33006 24091 21031 21042 0.04572858817527958 QKFAATLFII 10 Unmodified _QKFAATLFII_ 0 0 0 L1MB7_dup15526|chr12:1778466-1779619:+|1.2348258235728713|0.2997806788443397|2.04|150.0|41|3|sense L1MB7_dup15526|chr12:1778466-1779619:+|1.2348258235728713|0.2997806788443397|2.04|150.0|41|3|sense L1MB7_dup15526|chr12:1778466-1779619:+|1.2348258235728713|0.2997806788443397|2.04|150.0|41|3|sense MSMS UPN47_class_I_Rep_3 4 576.3606567382812 2 576.344792 1150.67503 NaN NaN NaN NaN NaN NaN NaN 83.088 1 86.438 85.938 86.938 3.35 0 0 0 0.53105 1 20833 20833 1.4819 0.15237 1 33007 10721 21032 21043 37904 37904 0.1057205244223951 QKFQINRR 8 Unmodified _QKFQINRR_ 0 0 0 L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|29|2|sense L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|29|2|sense L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|29|2|sense MSMS UPN47_class_I_Rep_2 3 545.3164672851562 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 79.961 1 83.331 82.831 83.831 3.3694 0 0 0 0.40746 1 19922 19922 0.69038 0 1 33008 9745 21033 21044 37905 37905 0.07954478414171717 QKFQLLQK 8 Unmodified _QKFQLLQK_ 0 0 0 ENST00000472180.1_1_1:224001926-224009041:-|nuORF ENST00000472180.1_1_1:224001926-224009041:-|nuORF ENST00000472180.1_1_1:224001926-224009041:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 516.8143920898438 2 516.813659 1031.61277 0.25181 0.00013014 0.90263 0.00046649 1.1544 0.00059663 516.8139821321818 31.308 0.088482 35.01 34.974 35.063 3.7015 12 7 2 0 0 0 0.82752 1 4624 4624 2.3027 0 1 57223 33009 6929 21034 21045 37906 37906 0.09822326093899392 QKFQLLQK 8 Unmodified _QKFQLLQK_ 0 0 0 ENST00000472180.1_1_1:224001926-224009041:-|nuORF ENST00000472180.1_1_1:224001926-224009041:-|nuORF ENST00000472180.1_1_1:224001926-224009041:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 516.813659 1031.61277 0.17545 9.0677E-05 1.9309 0.0009979 2.1063 0.0010886 516.8146541123809 35.073 0.060722 35.073 35.022 35.082 0 0.07471 0.00038173 NaN 2.3027 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 41953 33010 6929 21034 21045 0.09822326093899392 QKFQLLQK 8 Unmodified _QKFQLLQK_ 0 0 0 ENST00000472180.1_1_1:224001926-224009041:-|nuORF ENST00000472180.1_1_1:224001926-224009041:-|nuORF ENST00000472180.1_1_1:224001926-224009041:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 516.813659 1031.61277 -0.17064 -8.8187E-05 2.1346 0.0011032 1.964 0.001015 517.3163349344136 31.184 0.040682 34.913 34.889 34.929 3.7293 -0.08585 0.00059234 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 14046 33011 6929 21034 21045 0.09822326093899392 QKFTYFLV 8 Unmodified _QKFTYFLV_ 0 0 0 REV__Charlie4a_dup551|chr3:11507300-11507631:-|1.0291972275347858|0.0043925972236581|7.87|151.0|4|1|sense REV__Charlie4a_dup551|chr3:11507300-11507631:-|1.0291972275347858|0.0043925972236581|7.87|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 523.289306640625 2 523.289485 1044.56442 0.26375 0.00013802 -0.51161 -0.00026772 -0.24787 -0.00012971 523.2891421292753 67.235 0.22018 70.596 70.486 70.707 3.3611 27 17 2 0 0 0 0.72333 1 16161 16161 3.9444 2.6149 1 152610 + 33012 17384 21035 21046 37907 37907 0.04391832454007272 QKFVEVVV 8 Unmodified _QKFVEVVV_ 0 0 0 L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|105|2|anti-sense L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|105|2|anti-sense L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|105|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2821350097656 2 474.28166 946.548768 -0.20243 -9.6011E-05 1.648 0.00078162 1.4456 0.00068561 474.28228179081896 21.278 0.083597 21.278 21.258 21.342 0 16 7 3 0 0 0 0.82752 1 2357 2357 0.69038 0 1 532980 33013 8735 21036 21047 37908 37908 0.07335545936962262 QKFVEVVV 8 Unmodified _QKFVEVVV_ 0 0 0 L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|105|2|anti-sense L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|105|2|anti-sense L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|105|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.2822265625 2 474.28166 946.548768 -0.14725 -6.9836E-05 1.339 0.00063504 1.1917 0.00056521 474.2821118462266 23.767 0.15401 23.767 23.678 23.832 0 26 16 3 0 0 0 0.72333 1 3016 3016 2.3027 0 1 119600 33014 8735 21036 21047 37909 37909 0.07335545936962262 QKFWHKIL 8 Unmodified _QKFWHKIL_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MSMS UPN47_class_I_Rep_2 3 550.7487182617188 2 550.324194 1098.63383 NaN NaN NaN NaN NaN NaN NaN 66.245 1 69.504 69.004 70.004 3.2588 0 0 0 0.40746 1 15903 15903 0.69038 0 1 33015 4872 21037 21048 37910 37910 0.08846336193414572 QKGGRVRV 8 Unmodified _QKGGRVRV_ 0 0 0 L1PB4_dup4853|chr10:17451142-17451577:+|1.3078421239356093|0.0958757037965394|3.77|145.0|10|2|sense L1PB4_dup4853|chr10:17451142-17451577:+|1.3078421239356093|0.0958757037965394|3.77|145.0|10|2|sense L1PB4_dup4853|chr10:17451142-17451577:+|1.3078421239356093|0.0958757037965394|3.77|145.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 450.2686462402344 2 450.280318 898.546083 -0.42305 -0.00019049 0.83582 0.00037635 0.41277 0.00018586 450.2817050212941 45.739 0.10748 48.983 48.924 49.031 3.2441 5 4 2 0 0 0 0.82752 1 9722 9722 0.69038 0 1 12504 33016 15315 21038 21049 37911 37911 0.09275135322661754 QKGGRVRV 8 Unmodified _QKGGRVRV_ 0 0 0 L1PB4_dup4853|chr10:17451142-17451577:+|1.3078421239356093|0.0958757037965394|3.77|145.0|10|2|sense L1PB4_dup4853|chr10:17451142-17451577:+|1.3078421239356093|0.0958757037965394|3.77|145.0|10|2|sense L1PB4_dup4853|chr10:17451142-17451577:+|1.3078421239356093|0.0958757037965394|3.77|145.0|10|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 450.280318 898.546083 -0.42305 -0.00019049 0.83582 0.00037635 0.41277 0.00018586 450.2817050212941 45.739 0.10748 48.983 48.924 49.031 3.2441 0 0 NaN 0.69038 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 12504 33017 15315 21038 21049 0.09275135322661754 QKGKIPKKL 9 Unmodified _QKGKIPKKL_ 0 0 0 REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF MSMS UPN47_class_I_Rep_2 3 520.3531494140625 2 520.352951 1038.69135 NaN NaN NaN NaN NaN NaN NaN 108.87 1 112.4 111.9 112.9 3.5333 0 0 0 0.38478 1 26469 26469 4.3292 0 1 + 33018 22203 21039 21050 37912 37912 0.17355178398975113 QKGLNINI 8 Unmodified _QKGLNINI_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|52|2|sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|52|2|sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|52|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.2685546875 2 450.269084 898.523616 -0.21789 -9.8107E-05 -0.60734 -0.00027347 -0.82523 -0.00037157 450.2687516449272 45.286 0.55238 48.986 48.677 49.229 3.6999 47 32 2 0 0 0 0.82752 1 9510 9510 0.69038 0 1 89631 33019 11569 21040 21051 37913 37913 0.07029491134358068 QKHAKLIRD 9 Unmodified _QKHAKLIRD_ 0 0 0 REV__nc|ENSG00000129219|O14939-4|PLD2 REV__nc|ENSG00000129219|O14939-4|PLD2 MSMS UPN47_class_I_Rep_2 3 554.7296752929688 2 554.832914 1107.65128 NaN NaN NaN NaN NaN NaN NaN 85.751 1 89.184 88.684 89.684 3.4329 0 0 0 0.4007 1 21333 21333 0.52476 0 1 + 33020 18919 21041 21052 37914 37914 0.10175631728429835 QKHHFILC 8 Unmodified _QKHHFILC_ 0 0 0 L1ME4c_dup1397|chr2:233192374-233192930:-|2.719659582302129|0.1312778861285677|4.37|151.0|36|3|anti-sense L1ME4c_dup1397|chr2:233192374-233192930:-|2.719659582302129|0.1312778861285677|4.37|151.0|36|3|anti-sense L1ME4c_dup1397|chr2:233192374-233192930:-|2.719659582302129|0.1312778861285677|4.37|151.0|36|3|anti-sense MSMS UPN47_class_I_Rep_1 2 513.2713623046875 2 513.271104 1024.52766 NaN NaN NaN NaN NaN NaN NaN 32.942 1 36.655 36.155 37.155 3.7131 0 0 0 0.40738 1 5736 5736 0.79363 0 1 33021 12951 21042 21053 37915 37915 0.01637257356446753 QKHTLRPF 8 Unmodified _QKHTLRPF_ 0 0 0 REV__L1ME4c_dup5765|chr10:128061082-128061613:+|2.008798055116659|0.145518641079649|3.79|151.0|24|2|anti-sense REV__L1ME4c_dup5765|chr10:128061082-128061613:+|2.008798055116659|0.145518641079649|3.79|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 513.7962036132812 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 77.244 1 80.845 80.345 81.345 3.6016 0 0 0 0.40746 1 18234 18234 0.69038 0 1 + 33022 28317 21043 21054 37916 37916 0.0652828863690047 QKHVIHIL 8 Unmodified _QKHVIHIL_ 0 0 0 REV__L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|37|3|anti-sense REV__L1ME4b_dup12854|chr10:20082438-20082947:+|1.072253706606002|0.0200301816855785|5.74|148.0|37|3|anti-sense MSMS UPN47_class_I_Rep_2 3 494.3114318847656 2 494.308544 986.602535 NaN NaN NaN NaN NaN NaN NaN 70.088 1 73.371 72.871 73.871 3.2828 0 0 0 0.40625 1 17057 17057 2.3027 0 1 + 33023 28251 21044 21055 37917 37917 0.10869763159325885 QKHYREDH 8 Unmodified _QKHYREDH_ 0 0 0 REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|46|3|sense REV__L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|46|3|sense MSMS UPN48_class_I_Rep_2 6 556.7666015625 2 556.765229 1111.5159 NaN NaN NaN NaN NaN NaN NaN 29.762 1 33.394 32.894 33.894 3.6316 0 0 0 0.40625 1 4271 4271 2.3027 0 1 + 33024 26998 21045 21056 37918 37918 -0.03539268133204132 QKILCAPPL 9 Unmodified _QKILCAPPL_ 0 0 0 L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 491.7920837402344 2 491.791338 981.568123 0.29884 0.00014697 0.90096 0.00044308 1.1998 0.00059005 491.7917373034376 89.708 0.24675 89.708 89.547 89.794 0 32 22 3 0 0 0 0.45688 2 21600 21600;21606 4.756 1.8668 1 543670 33025 11195 21046 21057 37919;37920 37919 0.07660178956189156 QKILCAPPL 9 Unmodified _QKILCAPPL_ 0 0 0 L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 491.791338 981.568123 0.22281 0.00010958 2.1766 0.0010705 2.3995 0.00118 491.792369297208 86.298 0.35068 89.914 89.653 90.004 3.6153 0.1328 0.00087416 NaN 4.756 53 40 2 NaN NaN NaN NaN 0 NaN NaN 0 524890 33026 11195 21046 21057 0.07660178956189156 QKILCAPPL 9 Unmodified _QKILCAPPL_ 0 0 0 L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 491.791338 981.568123 0.41419 0.0002037 1.3742 0.0006758 1.7884 0.0008795 491.7917585751889 86.413 0.069275 89.853 89.837 89.906 3.4407 0.072575 8.4855E-05 NaN 4.756 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 35014 33027 11195 21046 21057 0.07660178956189156 QKILCAPPL 9 Unmodified _QKILCAPPL_ 0 0 0 L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 491.791338 981.568123 0.17224 8.4708E-05 1.4605 0.00071827 1.6328 0.00080297 491.79188845921817 86.079 0.52412 89.692 89.376 89.9 3.613 -0.08879 0.00016978 NaN 4.756 72 55 2 NaN NaN NaN NaN 0 NaN NaN 0 197670 33028 11195 21046 21057 0.07660178956189156 QKILCAPPL 9 Unmodified _QKILCAPPL_ 0 0 0 L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 491.791338 981.568123 0.26555 0.00013059 1.4471 0.00071168 1.7127 0.00084227 491.7918135272928 86.049 0.48001 89.755 89.432 89.912 3.7058 -0.026345 0.0001566 NaN 4.756 79 51 2 NaN NaN NaN NaN 0 NaN NaN 0 237530 33029 11195 21046 21057 0.07660178956189156 QKILCAPPL 9 Unmodified _QKILCAPPL_ 0 0 0 L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense L1MC1_dup7898|chrX:53658063-53659874:+|1.6900717291908705|0.0858515389701515|4.3|151.0|68|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 491.791338 981.568123 0.2659 0.00013077 1.3125 0.0006455 1.5784 0.00077627 491.7918137304186 85.994 0.59279 89.764 89.488 90.081 3.7701 -0.016988 2.4245E-05 NaN 4.756 118 69 2 NaN NaN NaN NaN 0 NaN NaN 0 251010 33030 11195 21046 21057 0.07660178956189156 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 593.3701171875 2 593.36933 1184.72411 0.51128 0.00030338 0.99949 0.00059307 1.5108 0.00089644 593.3698014811556 107.86 0.10625 111.53 111.49 111.59 3.6724 16 5 4 0 0 0 0.43106 1 26465 26465 17.113 0 1 14654000 33031 8898 21047 21058 37921 37921 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 593.8714599609375 2 593.36933 1184.72411 0.48397 0.00028717 0.52759 0.00031305 1.0116 0.00060023 593.3694218265426 107.85 0.12061 111.53 111.47 111.59 3.6783 27 11 3 0 0 0 0.4965 1 25529 25529 12.241 2.1667 1 16568000 33032 8898 21047 21058 37922 37922 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 593.3695678710938 2 593.36933 1184.72411 0.51969 0.00030837 0.44159 0.00026203 0.96129 0.0005704 593.3693725428725 107.86 0.11771 111.54 111.47 111.59 3.6813 26 9 3 0 0 0 0.53004 1 25473 25473 8.1555 0 1 17069000 33033 8898 21047 21058 37923 37923 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 593.36933 1184.72411 0.51128 0.00030338 0.99949 0.00059307 1.5108 0.00089644 593.3698014811556 107.86 0.10625 111.53 111.49 111.59 3.6724 0.013467 0.00028195 NaN 17.113 16 5 4 NaN NaN NaN NaN 0 NaN NaN 0 14654000 33034 8898 21047 21058 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 593.36933 1184.72411 0.63469 0.0003766 -0.12977 -7.7001E-05 0.50492 0.0002996 593.3687245078452 107.88 0.25198 111.42 111.34 111.59 3.5345 -0.09727 -0.0010582 NaN 17.113 49 29 2 NaN NaN NaN NaN 0 NaN NaN 0 9690700 33035 8898 21047 21058 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 593.36933 1184.72411 0.50798 0.00030142 0.97315 0.00057744 1.4811 0.00087885 593.369646798784 107.87 0.13303 111.41 111.35 111.48 3.5382 -0.10154 0.00025069 NaN 17.113 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 9239500 33036 8898 21047 21058 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 593.36933 1184.72411 0.48397 0.00028717 0.52759 0.00031305 1.0116 0.00060023 593.3694218265426 107.85 0.12061 111.53 111.47 111.59 3.6783 0.014411 -0.00027808 NaN 17.113 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 16568000 33037 8898 21047 21058 0.1391334073116468 QKILEKALRS 10 Unmodified _QKILEKALRS_ 0 0 0 L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense L1M4_dup6394|chr6:24943504-24944647:+|2.16665404147818|0.0394930987373145|5.78|151.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 593.36933 1184.72411 0.51942 0.00030821 0.0087408 5.1865E-06 0.52816 0.00031339 593.3688058424127 108.01 0.080879 111.69 111.67 111.75 3.6813 0.17498 -0.00089381 NaN 17.113 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1658500 33038 8898 21047 21058 0.1391334073116468 QKIQQRKLR 9 Unmodified _QKIQQRKLR_ 0 0 0 REV__L1MC4_dup6252|chr4:70976850-70977361:-|1.370789381649719|0.1420014099998022|3.27|149.0|3|1|sense REV__L1MC4_dup6252|chr4:70976850-70977361:-|1.370789381649719|0.1420014099998022|3.27|149.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 599.3804321289062 2 599.380563 1196.74657 0.58155 0.00034857 -1.2355 -0.00074052 -0.65393 -0.00039195 599.3796698732777 99.233 0.11063 99.233 99.182 99.293 0 18 9 3 0 0 0 0.26948 1 24184 24184 15.847 0 1 1351800 + 33039 26937 21048 21059 37924 37924 0.15606984919440947 QKIQQRKLR 9 Unmodified _QKIQQRKLR_ 0 0 0 REV__L1MC4_dup6252|chr4:70976850-70977361:-|1.370789381649719|0.1420014099998022|3.27|149.0|3|1|sense REV__L1MC4_dup6252|chr4:70976850-70977361:-|1.370789381649719|0.1420014099998022|3.27|149.0|3|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 599.380563 1196.74657 0.58155 0.00034857 -1.2355 -0.00074052 -0.65393 -0.00039195 599.3796698732777 99.233 0.11063 99.233 99.182 99.293 0 0.090561 -0.00075578 NaN 15.847 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1351800 + 33040 26937 21048 21059 0.15606984919440947 QKIQQRKLR 9 Unmodified _QKIQQRKLR_ 0 0 0 REV__L1MC4_dup6252|chr4:70976850-70977361:-|1.370789381649719|0.1420014099998022|3.27|149.0|3|1|sense REV__L1MC4_dup6252|chr4:70976850-70977361:-|1.370789381649719|0.1420014099998022|3.27|149.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 599.380563 1196.74657 0.41433 0.00024834 -0.45215 -0.00027101 -0.037819 -2.2668E-05 599.8815820151239 95.393 0.25615 99.009 98.929 99.185 3.6167 -0.13317 0.00018325 NaN 15.847 58 31 3 NaN NaN NaN NaN 0 NaN NaN 0 789460 + 33041 26937 21048 21059 0.15606984919440947 QKIQSELLK 9 Unmodified _QKIQSELLK_ 0 0 0 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 MULTI-SECPEP UPN47_class_I_Rep_1 2 544.2520141601562 2 543.829506 1085.64446 0.27157 0.00014769 -0.61131 -0.00033245 -0.33974 -0.00018476 543.8290932921775 49.79 0.57162 53.45 53.196 53.768 3.6592 38 33 2 0 0 0 0.12207 1 10839 10839 5.7319 0.43497 1 48650 + 33042 17692 21049 21060 37925 37925 0.10506274057183873 QKIQVDNLY 9 Unmodified _QKIQVDNLY_ 0 0 0 L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|26|2|anti-sense L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|26|2|anti-sense L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|26|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.803955078125 2 560.803488 1119.59242 0.51739 0.00029015 -0.18528 -0.00010391 0.33211 0.00018625 560.8031227401572 54.546 0.59958 57.865 57.628 58.227 3.3187 44 28 2 0 0 0 0.36392 1 12388 12388 10.074 0.6908 1 116550 33043 13172 21050 21061 37926 37926 0.03741110643431966 QKISRRAKNF 10 Unmodified _QKISRRAKNF_ 0 0 0 L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|33|3|sense L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|33|3|sense L1MEf_dup3428|chr5:50747965-50749033:-|1.8472668743309064|0.3616769390609726|2.35|151.0|33|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 624.8744506835938 2 624.370195 1246.72584 0.677 0.0004227 2.3489 0.0014666 3.0259 0.0018893 624.8733022509806 95.39 0.26437 95.39 95.157 95.422 0 41 24 2 0 0 0 0.505 1 23149 23149 11.495 3.3392 1 6989900 33044 13266 21051 21062 37927 37927 0.1123439453976971 QKIYRHKE 8 Unmodified _QKIYRHKE_ 0 0 0 HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|40|3|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|40|3|sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|40|3|sense MSMS UPN47_class_I_Rep_1 2 551.3128662109375 2 551.311815 1100.60908 NaN NaN NaN NaN NaN NaN NaN 108.7 1 112.33 111.83 112.83 3.6355 0 0 0 0.40157 1 26732 26732 7.2892 0 1 33045 8042 21052 21063 37928 37928 0.06279656320043614 QKKGKRVK 8 Unmodified _QKKGKRVK_ 0 0 0 L1ME1_dup24231|chr13:99327848-99329398:-|2.9391185864492324|0.0790755885186007|5.22|151.0|78|1|anti-sense L1ME1_dup24231|chr13:99327848-99329398:-|2.9391185864492324|0.0790755885186007|5.22|151.0|78|1|anti-sense L1ME1_dup24231|chr13:99327848-99329398:-|2.9391185864492324|0.0790755885186007|5.22|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 486.326904296875 2 486.327268 970.639983 NaN NaN NaN NaN NaN NaN NaN 118.16 1 121.83 121.33 122.33 3.6627 0 0 0 0.40738 1 28326 28326 0.79363 0 1 33046 12323 21053 21064 37929 37929 0.15348854424939873 QKKHKHAA 8 Unmodified _QKKHKHAA_ 0 0 0 REV__ENST00000541444.5_1_12:1902823-1906819:-|nuORF REV__ENST00000541444.5_1_12:1902823-1906819:-|nuORF MSMS UPN46_class_I_Rep_3 1 474.2821960449219 2 474.280318 946.546083 NaN NaN NaN NaN NaN NaN NaN 115.5 1 115.5 115 116 0 0 0 0 0.40738 1 28567 28567 0.79363 0.10326 1 + 33047 22917 21054 21065 37930 37930 0.07067135322643026 QKKHLIEFNI 10 Unmodified _QKKHLIEFNI_ 0 0 0 L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|12|1|sense L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|12|1|sense L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 635.370849609375 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 90.277 1 94.024 93.524 94.524 3.7471 0 0 0 0.53105 1 21519 21519 0.40072 0 1 33048 9791 21055 21066 37931 37931 0.1004934073118875 QKKIIATY 8 Unmodified _QKKIIATY_ 0 0 0 MER4-int_dup2605|chr17:21133628-21136016:-|6.715337729044181|0.1793899380738371|5.23|151.0|53|2|sense MER4-int_dup2605|chr17:21133628-21136016:-|6.715337729044181|0.1793899380738371|5.23|151.0|53|2|sense MER4-int_dup2605|chr17:21133628-21136016:-|6.715337729044181|0.1793899380738371|5.23|151.0|53|2|sense MSMS UPN46_class_I_Rep_3 1 482.7957763671875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 38.001 1 38.001 37.501 38.501 0 0 0 0 0.40604 1 7198 7198 2.5775 0 1 33049 15946 21056 21067 37932 37932 0.09207234828272703 QKKILISIEM 10 Unmodified _QKKILISIEM_ 0 0 0 HAL1_dup20635|chr17:61706706-61707759:-|1.0598824975008363|0.0073263476836305|7.18|150.0|28|3|sense HAL1_dup20635|chr17:61706706-61707759:-|1.0598824975008363|0.0073263476836305|7.18|150.0|28|3|sense HAL1_dup20635|chr17:61706706-61707759:-|1.0598824975008363|0.0073263476836305|7.18|150.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 601.8643188476562 2 601.862492 1201.71043 NaN NaN NaN NaN NaN NaN NaN 37.709 1 41.369 40.869 41.869 3.6604 0 0 0 0.53105 1 6388 6388 1.6526 0 1 33050 7865 21057 21068 37933 37933 0.11764346907739309 QKKKELCL 8 Unmodified _QKKKELCL_ 0 0 0 REV__AluY_dup54773|chrX:1536258-1536560:-|1.0545065420339632|0.0091434356106517|6.85|151.0|10|3|sense REV__AluY_dup54773|chrX:1536258-1536560:-|1.0545065420339632|0.0091434356106517|6.85|151.0|10|3|sense MSMS UPN47_class_I_Rep_3 4 495.2928466796875 2 495.294245 988.573937 NaN NaN NaN NaN NaN NaN NaN 35.232 1 38.496 37.996 38.996 3.2639 0 0 0 0.40643 1 6501 6501 2.0598 0 1 + 33051 17239 21058 21069 37934 37934 0.07919277467851771 QKKKITLLY 9 Unmodified _QKKKITLLY_ 0 0 0 MER83B-int_dup22|chr2:135072211-135074671:-|2.36335104271048|0.0598068717952759|5.3|151.0|63|3|sense MER83B-int_dup22|chr2:135072211-135074671:-|2.36335104271048|0.0598068717952759|5.3|151.0|63|3|sense MER83B-int_dup22|chr2:135072211-135074671:-|2.36335104271048|0.0598068717952759|5.3|151.0|63|3|sense MSMS UPN48_class_I_Rep_3 7 567.8662109375 2 567.865892 1133.71723 NaN NaN NaN NaN NaN NaN NaN 46.564 1 50.201 49.701 50.701 3.6363 0 0 0 0.40038 1 9045 9045 0.6015 0 1 33052 16220 21059 21070 37935 37935 0.15572027850635095 QKKKKGIPRN 10 Unmodified _QKKKKGIPRN_ 0 0 0 L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|164|3|sense L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|164|3|sense L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|164|3|sense MSMS UPN46_class_I_Rep_3 1 598.8844604492188 2 598.882939 1195.75132 NaN NaN NaN NaN NaN NaN NaN 33.883 1 33.883 33.383 34.383 0 0 0 0 0.53105 1 5982 5982 0.40072 0 1 33053 14122 21060 21071 37936 37936 0.16127869062233913 QKKKKGIPRN 10 Unmodified _QKKKKGIPRN_ 0 0 0 L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|164|3|sense L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|164|3|sense L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|164|3|sense MSMS UPN48_class_I_Rep_1 5 598.8833618164062 2 598.882939 1195.75132 NaN NaN NaN NaN NaN NaN NaN 28.24 1 31.797 31.297 32.297 3.5571 0 0 0 0.53105 1 3748 3748 0.40072 0 1 33054 14122 21060 21071 37937 37937 0.16127869062233913 QKKKKICI 8 Unmodified _QKKKKICI_ 0 0 0 L1MC5a_dup15236|chr18:21098133-21099461:+|1.306953894077988|0.007439494438706|7.46|151.0|26|2|sense L1MC5a_dup15236|chr18:21098133-21099461:+|1.306953894077988|0.007439494438706|7.46|151.0|26|2|sense L1MC5a_dup15236|chr18:21098133-21099461:+|1.306953894077988|0.007439494438706|7.46|151.0|26|2|sense MSMS UPN46_class_I_Rep_3 1 494.8204345703125 2 494.82043 987.626307 NaN NaN NaN NaN NaN NaN NaN 24.99 1 24.99 24.49 25.49 0 0 0 0 0.40746 1 3361 3361 0.69038 0 1 33055 11727 21061 21072 37938 37938 0.13199860601469027 QKKKKKKK 8 Unmodified _QKKKKKKK_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|147|3|sense;AluSx_dup20237|chr3:50008547-50008850:-|1.1151269309956109|0.0089597832156314|6.96|151.0|8|2|sense;L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|1|1|sense;Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|62|3|sense;THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|67|1|anti-sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|7|2|sense;AluSq2_dup31070|chrX:1521909-1522254:-|1.8108009798113425|0.0149214044047803|6.92|151.0|10|3|sense;AluSz_dup9980|chr2:32327727-32328071:-|1.000373001823582|0.0087219087561263|6.84|151.0|8|2|sense;AluSc_dup33969|chr21:38397318-38397626:+|1.587921566536442|0.1678042079116381|3.24|146.0|11|3|sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|2|1|sense;AluSq2_dup26458|chr8:37890660-37890800:+|2.0657867527981497|0.0221373056220467|6.54|151.0|5|3|sense;AluJb_dup114342|chr19:7389153-7389455:-|1.4592138481339807|0.0566722104771358|4.69|151.0|1|1|sense;L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|91|3|sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|6|2|sense;AluSx4_dup1648|chr2:196169069-196169364:-|1.834119963367384|0.0371979367684726|5.62|151.0|9|3|sense;HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|40|1|sense;L1ME1_dup26991|chr16:75042086-75042772:-|1.4524315706492943|0.00688402319253|7.72|151.0|6|1|sense;AluSc5_dup3564|chrX:1521024-1521345:-|2.389651327194059|0.0188790483242322|6.98|151.0|4|1|sense;AluJb_dup36092|chr5:70989821-70990010:-|2.211852482793979|0.0693417533637569|5.0|151.0|5|2|sense;AluSx1_dup23802|chr3:196644496-196644799:+|1.7954048571305223|0.0061861966169318|8.18|151.0|4|1|sense;L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|56|1|sense;L1MB2_dup1110|chr2:174094654-174095567:-|1.0354692058158286|0.0217369358693396|5.57|151.0|15|2|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|8|1|sense;AluSz_dup11209|chr2:65125416-65125713:-|1.006605520487267|0.0195189865574971|5.69|151.0|3|1|sense;L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|119|3|sense;L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|49|1|sense;AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|10|3|sense;AluSx_dup97031|chr17:30780971-30781278:-|1.284802133161412|0.2359223228121592|2.45|151.0|10|3|sense;AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|3|1|sense;L1PA15_dup3405|chr7:18433024-18435422:+|2.3708425199591807|0.0183684850698486|7.01|151.0|37|2|sense;L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|93|2|anti-sense;AluSx3_dup22823|chr13:50087347-50087575:-|2.444666273738357|0.0184878402048419|7.05|151.0|5|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|8|2|sense;AluJb_dup109963|chr17:68120862-68121160:+|1.039969110704712|0.1263125355173859|3.04|149.0|11|3|sense;L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense;L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|152|3|sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|7|2|sense;AluSx1_dup96395|chr17:29746264-29746577:+|1.1894265863130384|0.0626124722347983|4.25|151.0|8|2|sense;AluSx1_dup19495|chr3:50339355-50339668:-|1.1836872178441429|0.0999671576793565|3.57|151.0|12|3|sense;L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|8|1|sense;AluSz_dup28196|chr5:70481016-70481325:-|1.1402944924556215|0.4902187082532336|1.22|149.0|4|1|sense;L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|43|2|sense;L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|44|2|anti-sense;L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|144|3|sense;L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|30|1|sense;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|22|1|sense;MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|122|3|anti-sense;L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|140|3|sense;ENSG00000107745.19,MICU1,chr10,-,I9.1,72509404,72523801|47|11.27|1|intron;L1MB1_dup2595|chr7:131064166-131065145:+|1.4001883354774138|0.0287190868240749|5.61|151.0|3|1|sense;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|75|2|sense;nc|ENSG00000167978|Q9UQ35-3|SRRM2;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|154|3|sense;AluSx1_dup37572|chr6:85635488-85635802:+|1.4954711006093628|0.0109237314065769|7.1|151.0|7|2|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|72|2|sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|3|1|sense;L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|69|3|sense;AluJo_dup1804|chr1:35827788-35828044:-|1.3348464510809412|0.0785045021780359|4.09|151.0|2|1|sense;L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|5|1|sense;AluJr4_dup5213|chr4:87354831-87355121:+|1.1421022498971467|0.0174506808015892|6.03|151.0|6|2|sense;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|12|1|sense;AluSq2_dup54614|chr19:1589058-1589371:+|1.0762494540455585|0.3092428470924084|1.8|151.0|8|2|sense;AluSz6_dup45328|chr20:4785028-4785367:+|1.0974549106077247|0.2095450070665822|2.39|151.0|5|2|sense;AluSz6_dup36663|chr15:51920321-51920650:+|1.0227141401479731|0.0209575801242003|5.61|151.0|10|3|sense;L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|103|3|sense;L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|82|2|sense;L1MA2_dup5721|chr12:11040719-11042620:+|1.31008568811956|0.1453049791181434|3.17|151.0|51|3|sense;AluJb_dup41222|chr6:24850086-24850399:-|1.6841640653793342|0.2452854032988079|2.78|151.0|2|1|sense;L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|160|3|sense;L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|172|3|sense;L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|67|3|sense;AluSx4_dup10648|chr20:50919997-50920291:+|1.1962134286110293|0.026064382395244|5.52|151.0|5|2|sense;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|48|1|sense;Tigger6a_dup529|chr10:26574746-26575179:+|1.1400052246654542|0.017528881000005|6.02|151.0|16|3|sense;AluSz6_dup8929|chr3:71776336-71776677:-|1.0979109594689225|0.1281722971251909|3.1|144.0|6|2|sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|10|3|sense;L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|5|1|sense;L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|56|3|sense;AluSz_dup92604|chr19:7390225-7390538:+|1.0854362849122274|0.0171373208509769|5.98|151.0|9|2|sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|5|1|sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|14|3|sense;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|5|1|sense;AluSx_dup58166|chrX:2728194-2728494:-|1.3719127493178724|0.043827328953403|4.97|151.0|7|2|sense;AluJo_dup69910|chr19:7392772-7393077:+|2.764524251754442|0.0365277377957557|6.24|151.0|12|3|sense;AluY_dup102515|chr21:35000229-35000539:-|3.6507063802806585|0.0123665757316047|8.21|151.0|9|2|sense;AluSz_dup8397|chr1:235693998-235694314:-|1.5529301044470656|0.1042385119104444|3.9|151.0|7|2|sense;AluSz6_dup29367|chr11:33279034-33279353:+|1.4850189648933|0.050532709470012|4.88|151.0|11|3|sense;L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|25|2|sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|9|1|sense;AluSz6_dup9618|chr3:128734148-128734482:+|2.037851127550091|0.0434128234829147|5.55|151.0|6|1|sense;L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|78|2|sense;Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|44|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|10|2|sense;L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|43|3|sense;AluSz_dup67860|chr12:66236267-66236594:+|4.878664981148395|0.2216958913757622|4.46|151.0|13|3|sense;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|7|3|sense;L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|34|2|sense;AluSz_dup40595|chr7:102654053-102654354:+|1.5695272253275503|0.1974104865479011|2.99|150.0|8|2|sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|12|3|sense;AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|12|3|sense;L1MD1_dup6335|chr19:39147094-39147866:-|1.028988457013287|0.0582980387256412|4.14|151.0|1|1|sense;AluSg_dup1036|chr1:44627065-44627370:+|1.2503119037881556|0.0163544881670791|6.26|148.0|6|1|sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|13|3|sense;AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|11|3|sense;AluSx_dup49436|chr8:37893067-37893351:-|2.1775345471688587|0.0172614017549066|6.98|151.0|5|1|sense;AluY_dup60537|chr10:26447096-26447400:+|1.3493835914550465|0.0078956487571961|7.42|151.0|12|3|sense;AluSx1_dup67717|chr10:112673036-112673343:+|1.3468632080764416|0.0126039649386139|6.74|151.0|5|1|sense;AluJo_dup41011|chrX:153619139-153619450:-|19.63834237078373|0.0015166892343507|13.66|141.0|5|1|sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|9|2|sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|7|2|sense;AluJb_dup2377|chr1:26758303-26758647:+|1.3786207584175247|0.0197503006114131|6.13|151.0|8|2|sense;L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|23|2|sense;AluSz_dup28241|chr5:71120875-71121184:+|1.1551966100461015|0.3253767774677285|1.83|147.0|4|1|sense;AluJb_dup45261|chr6:136786795-136786941:-|1.2117731304626962|0.0401334428352434|4.92|151.0|6|2|sense;AluJb_dup50607|chr7:100313579-100313914:+|3.5071432978935126|0.0240933012090079|7.19|151.0|8|2|sense;AluSz_dup28222|chr5:70995991-70996300:+|1.253169287506126|0.3068757907717796|2.03|143.0|4|1|sense;AluSx1_dup44191|chr7:77058499-77058796:-|2.4242579282989007|0.1447624007977476|4.07|151.0|8|2|sense;AluJr_dup4116|chr1:146148509-146148813:-|2.5149217557996475|0.1449563314920023|4.12|151.0|12|3|sense;AluJr_dup70324|chr17:1551274-1551595:-|2.0241217357095302|0.1973510371474596|3.36|151.0|13|3|sense;AluSx1_dup3178|chr1:44527644-44527951:+|1.167101325874239|0.001986602724084|9.2|148.0|12|3|sense;AluSc8_dup6068|chr5:21490906-21491211:+|1.6303616396721212|0.0578912547365355|4.82|151.0|4|1|sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|9|2|sense;AluJb_dup108985|chr17:58265574-58265884:-|1.105951891051778|0.0026692216152215|8.69|143.0|14|3|sense;ENST00000323571.8_1_17:38438263-38438389:+|nuORF;AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|12|3|sense;L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|158|3|sense;AluSx_dup91527|chr16:22413633-22413939:-|1.1631420900961085|0.1614630633755779|2.85|151.0|9|2|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|8|2|sense;AluY_dup18647|chr3:50038550-50038861:+|1.306953894077988|0.0639052227565405|4.35|151.0|8|2|sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|5|1|sense;AluSz6_dup35643|chr14:77529613-77529877:-|2.4723117532484533|0.0337849508184891|6.19|151.0|3|1|sense;AluSz6_dup33173|chr12:118209703-118210001:-|1.4085312980056075|0.0052303843702154|8.07|151.0|3|1|sense;AluSq2_dup22371|chr7:5314564-5314871:-|1.7995736157511657|0.405396187068398|2.15|151.0|11|3|sense;AluSq2_dup9527|chr2:233073358-233073666:+|1.6018182733609276|0.0136492514005818|6.87|151.0|3|1|sense;PABL_A-int_dup377|chr19:21086913-21089283:-|1.6634001843570188|0.0444668435413478|5.23|150.0|101|1|anti-sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|14|3|sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|12|3|sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|10|3|sense;AluSx1_dup95818|chr17:16056301-16056615:-|2.065512397684905|0.1457344396816498|3.83|151.0|11|3|sense;AluSq2_dup43808|chr13:110898743-110899056:-|1.107493960111305|0.3788332716746631|1.55|151.0|8|2|sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|3|1|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|10|2|sense;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|10|3|sense;AluJr_dup35012|chr7:139978661-139978970:+|1.3966061361821196|0.1173646958601732|3.57|151.0|2|1|sense;AluSq2_dup15563|chr4:168994746-168995056:-|1.1112800411118051|0.4884026382788179|1.19|151.0|16|3|sense;L1MB5_dup5717|chr10:114851214-114852065:-|1.2277754734251067|0.0530766954713818|4.53|151.0|55|3|anti-sense;HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|106|2|sense;L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|1|1|sense;L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|15|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|2|1|sense;AluJr_dup13759|chr3:33548760-33549054:-|1.2844856692523572|0.2441155484820085|2.4|151.0|5|1|sense;L1ME4a_dup28811|chr15:90019126-90019528:-|1.3220892467871113|0.0115155445825711|6.84|150.0|3|1|sense;AluJb_dup113840|chr19:2292244-2292425:+|1.5910565974324509|0.1735916492752556|3.2|151.0|7|3|sense;AluJb_dup119245|chr20:4007623-4007927:+|1.112108091038304|0.0081965775816425|7.08|151.0|5|2|sense;AluSz_dup54566|chrX:119627792-119628088:-|3.9988562726998|0.3533891028812816|3.5|151.0|6|1|sense;AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|11|3|sense;AluSz_dup69996|chr12:118356292-118356599:-|1.4493247081569405|0.011018770001781|7.04|151.0|13|3|sense;L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|3|1|sense;AluSc5_dup1372|chr3:152275429-152275733:+|1.1880608909720085|0.0271697228334584|5.45|151.0|10|3|sense;L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|42|3|sense;AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|11|3|sense;AluJr_dup69635|chr16:74320243-74320614:+|1.2429421601008936|0.222338958940668|2.48|151.0|9|3|sense;nc|ENSG00000070814|Q13428-4|TCOF1;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|132|3|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|12|3|sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|11|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|12|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|12|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|9|2|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|10|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|96|2|sense;AluSx1_dup113502|chr21:34854410-34854613:+|1.316746649678359|0.0210558908533853|5.97|151.0|2|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|8|2|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|85|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|12|3|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|7|2|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|2|1|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|7|2|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|3|1|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|6|1|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|60|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|17|1|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|28|2|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|20|2|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|5|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|10|3|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|13|3|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|10|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|9|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|11|3|sense;AluJb_dup144|chr1:1883020-1883308:+|1.2509263987826071|0.0177470246572713|6.14|151.0|4|1|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|4|1|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|8|2|sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|7|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|6|2|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|10|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|10|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|4|1|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|5|1|sense;AluSx1_dup57540|chrX:1476908-1477218:+|1.5401912601292471|0.0055350266363355|8.12|151.0|9|2|sense;AluY_dup33776|chr5:177071406-177071713:+|1.02189231345965|0.2899967782079396|1.82|151.0|14|3|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|5|1|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|14|3|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|9|2|sense;AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|7|2|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|11|2|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|12|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|122|3|sense;ENSG00000129292|ENST00000395386|PHF20L1;L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|3|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|10|3|sense;AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|13|3|sense;AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000111300|ENST00000261745|NAA25;L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense REV__L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|71|3|sense;REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense;nc|ENSG00000167978|Q9UQ35-2|SRRM2;REV__AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|14|3|sense;ENSG00000111300|ENST00000261745|NAA25;L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense;REV__L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|82|2|sense nc|ENSG00000167978|Q9UQ35-2|SRRM2 MSMS UPN47_class_I_Rep_2 3 522.3743286132812 2 522.374218 1042.73388 NaN NaN NaN NaN NaN NaN NaN 108.76 1 112.29 111.79 112.79 3.5333 0 0 0 0.40798 1 26424 26424 0 0 1 33056 29907;51;303;30419;4340;16962;28456;9060;253;16354;1968;9418;13018;29927 21062 21073 37939 37939 0.2142257352722936 QKKKKKKK 8 Unmodified _QKKKKKKK_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|147|3|sense;AluSx_dup20237|chr3:50008547-50008850:-|1.1151269309956109|0.0089597832156314|6.96|151.0|8|2|sense;L1ME3B_dup7985|chr21:15891875-15892497:+|1.4855108912607808|0.2268423971410768|2.71|151.0|1|1|sense;Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|62|3|sense;THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|67|1|anti-sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|7|2|sense;AluSq2_dup31070|chrX:1521909-1522254:-|1.8108009798113425|0.0149214044047803|6.92|151.0|10|3|sense;AluSz_dup9980|chr2:32327727-32328071:-|1.000373001823582|0.0087219087561263|6.84|151.0|8|2|sense;AluSc_dup33969|chr21:38397318-38397626:+|1.587921566536442|0.1678042079116381|3.24|146.0|11|3|sense;AluJr4_dup18109|chr18:23523429-23523734:+|1.053574594222643|0.3361936728067669|1.65|151.0|2|1|sense;AluSq2_dup26458|chr8:37890660-37890800:+|2.0657867527981497|0.0221373056220467|6.54|151.0|5|3|sense;AluJb_dup114342|chr19:7389153-7389455:-|1.4592138481339807|0.0566722104771358|4.69|151.0|1|1|sense;L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|91|3|sense;AluSz_dup32288|chr6:24811229-24811536:-|1.0262337890269886|0.1748132096347756|2.55|151.0|6|2|sense;AluSx4_dup1648|chr2:196169069-196169364:-|1.834119963367384|0.0371979367684726|5.62|151.0|9|3|sense;HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|40|1|sense;L1ME1_dup26991|chr16:75042086-75042772:-|1.4524315706492943|0.00688402319253|7.72|151.0|6|1|sense;AluSc5_dup3564|chrX:1521024-1521345:-|2.389651327194059|0.0188790483242322|6.98|151.0|4|1|sense;AluJb_dup36092|chr5:70989821-70990010:-|2.211852482793979|0.0693417533637569|5.0|151.0|5|2|sense;AluSx1_dup23802|chr3:196644496-196644799:+|1.7954048571305223|0.0061861966169318|8.18|151.0|4|1|sense;L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|56|1|sense;L1MB2_dup1110|chr2:174094654-174095567:-|1.0354692058158286|0.0217369358693396|5.57|151.0|15|2|sense;L1MA4A_dup5352|chr15:50962043-50963831:+|2.059337253298139|0.0837854104044496|4.62|151.0|8|1|sense;AluSz_dup11209|chr2:65125416-65125713:-|1.006605520487267|0.0195189865574971|5.69|151.0|3|1|sense;L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|119|3|sense;L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|49|1|sense;AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|10|3|sense;AluSx_dup97031|chr17:30780971-30781278:-|1.284802133161412|0.2359223228121592|2.45|151.0|10|3|sense;AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|3|1|sense;L1PA15_dup3405|chr7:18433024-18435422:+|2.3708425199591807|0.0183684850698486|7.01|151.0|37|2|sense;L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|93|2|anti-sense;AluSx3_dup22823|chr13:50087347-50087575:-|2.444666273738357|0.0184878402048419|7.05|151.0|5|2|sense;AluJr_dup73935|chr18:2782458-2782772:+|1.0063922232092073|0.2041325595599243|2.3|151.0|8|2|sense;AluJb_dup109963|chr17:68120862-68121160:+|1.039969110704712|0.1263125355173859|3.04|149.0|11|3|sense;L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense;L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|152|3|sense;AluY_dup96549|chr19:14386128-14386408:+|1.0199881587220836|0.0065042580109928|7.29|151.0|7|2|sense;AluSx1_dup96395|chr17:29746264-29746577:+|1.1894265863130384|0.0626124722347983|4.25|151.0|8|2|sense;AluSx1_dup19495|chr3:50339355-50339668:-|1.1836872178441429|0.0999671576793565|3.57|151.0|12|3|sense;L1M4c_dup736|chr4:1964274-1965609:+|2.8140488575162643|0.1286667194385861|4.45|151.0|8|1|sense;AluSz_dup28196|chr5:70481016-70481325:-|1.1402944924556215|0.4902187082532336|1.22|149.0|4|1|sense;L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|43|2|sense;L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|44|2|anti-sense;L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|144|3|sense;L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|30|1|sense;L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|22|1|sense;MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|122|3|anti-sense;L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|140|3|sense;ENSG00000107745.19,MICU1,chr10,-,I9.1,72509404,72523801|47|11.27|1|intron;L1MB1_dup2595|chr7:131064166-131065145:+|1.4001883354774138|0.0287190868240749|5.61|151.0|3|1|sense;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|75|2|sense;nc|ENSG00000167978|Q9UQ35-3|SRRM2;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|154|3|sense;AluSx1_dup37572|chr6:85635488-85635802:+|1.4954711006093628|0.0109237314065769|7.1|151.0|7|2|sense;HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|72|2|sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|3|1|sense;L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|69|3|sense;AluJo_dup1804|chr1:35827788-35828044:-|1.3348464510809412|0.0785045021780359|4.09|151.0|2|1|sense;L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|5|1|sense;AluJr4_dup5213|chr4:87354831-87355121:+|1.1421022498971467|0.0174506808015892|6.03|151.0|6|2|sense;L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|12|1|sense;AluSq2_dup54614|chr19:1589058-1589371:+|1.0762494540455585|0.3092428470924084|1.8|151.0|8|2|sense;AluSz6_dup45328|chr20:4785028-4785367:+|1.0974549106077247|0.2095450070665822|2.39|151.0|5|2|sense;AluSz6_dup36663|chr15:51920321-51920650:+|1.0227141401479731|0.0209575801242003|5.61|151.0|10|3|sense;L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|103|3|sense;L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|82|2|sense;L1MA2_dup5721|chr12:11040719-11042620:+|1.31008568811956|0.1453049791181434|3.17|151.0|51|3|sense;AluJb_dup41222|chr6:24850086-24850399:-|1.6841640653793342|0.2452854032988079|2.78|151.0|2|1|sense;L1PA16_dup11625|chr14:68023627-68029297:-|2.1581337620987098|0.0377431866874716|5.84|150.0|160|3|sense;L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|172|3|sense;L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|67|3|sense;AluSx4_dup10648|chr20:50919997-50920291:+|1.1962134286110293|0.026064382395244|5.52|151.0|5|2|sense;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|48|1|sense;Tigger6a_dup529|chr10:26574746-26575179:+|1.1400052246654542|0.017528881000005|6.02|151.0|16|3|sense;AluSz6_dup8929|chr3:71776336-71776677:-|1.0979109594689225|0.1281722971251909|3.1|144.0|6|2|sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|10|3|sense;L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|5|1|sense;L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|56|3|sense;AluSz_dup92604|chr19:7390225-7390538:+|1.0854362849122274|0.0171373208509769|5.98|151.0|9|2|sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|5|1|sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|14|3|sense;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|5|1|sense;AluSx_dup58166|chrX:2728194-2728494:-|1.3719127493178724|0.043827328953403|4.97|151.0|7|2|sense;AluJo_dup69910|chr19:7392772-7393077:+|2.764524251754442|0.0365277377957557|6.24|151.0|12|3|sense;AluY_dup102515|chr21:35000229-35000539:-|3.6507063802806585|0.0123665757316047|8.21|151.0|9|2|sense;AluSz_dup8397|chr1:235693998-235694314:-|1.5529301044470656|0.1042385119104444|3.9|151.0|7|2|sense;AluSz6_dup29367|chr11:33279034-33279353:+|1.4850189648933|0.050532709470012|4.88|151.0|11|3|sense;L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|25|2|sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|9|1|sense;AluSz6_dup9618|chr3:128734148-128734482:+|2.037851127550091|0.0434128234829147|5.55|151.0|6|1|sense;L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|78|2|sense;Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|44|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|10|2|sense;L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|43|3|sense;AluSz_dup67860|chr12:66236267-66236594:+|4.878664981148395|0.2216958913757622|4.46|151.0|13|3|sense;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|7|3|sense;L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|34|2|sense;AluSz_dup40595|chr7:102654053-102654354:+|1.5695272253275503|0.1974104865479011|2.99|150.0|8|2|sense;AluSx_dup45902|chr7:102558721-102559029:+|1.7248074794365074|0.1994445771776236|3.11|149.0|12|3|sense;AluJr_dup81253|chr20:32091708-32092005:+|1.232153008103398|0.360665176098951|1.77|149.0|12|3|sense;L1MD1_dup6335|chr19:39147094-39147866:-|1.028988457013287|0.0582980387256412|4.14|151.0|1|1|sense;AluSg_dup1036|chr1:44627065-44627370:+|1.2503119037881556|0.0163544881670791|6.26|148.0|6|1|sense;AluSx3_dup32316|chr22:44191389-44191697:-|1.0345274201155357|0.2320528401153554|2.16|151.0|13|3|sense;AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|11|3|sense;AluSx_dup49436|chr8:37893067-37893351:-|2.1775345471688587|0.0172614017549066|6.98|151.0|5|1|sense;AluY_dup60537|chr10:26447096-26447400:+|1.3493835914550465|0.0078956487571961|7.42|151.0|12|3|sense;AluSx1_dup67717|chr10:112673036-112673343:+|1.3468632080764416|0.0126039649386139|6.74|151.0|5|1|sense;AluJo_dup41011|chrX:153619139-153619450:-|19.63834237078373|0.0015166892343507|13.66|141.0|5|1|sense;AluSx3_dup29657|chr19:24054925-24055232:+|1.1171527287994336|0.019330216754334|5.85|150.0|9|2|sense;AluSz_dup87883|chr17:57450405-57450697:+|1.2747634827316623|0.0514845436973189|4.63|151.0|7|2|sense;AluJb_dup2377|chr1:26758303-26758647:+|1.3786207584175247|0.0197503006114131|6.13|151.0|8|2|sense;L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|23|2|sense;AluSz_dup28241|chr5:71120875-71121184:+|1.1551966100461015|0.3253767774677285|1.83|147.0|4|1|sense;AluJb_dup45261|chr6:136786795-136786941:-|1.2117731304626962|0.0401334428352434|4.92|151.0|6|2|sense;AluJb_dup50607|chr7:100313579-100313914:+|3.5071432978935126|0.0240933012090079|7.19|151.0|8|2|sense;AluSz_dup28222|chr5:70995991-70996300:+|1.253169287506126|0.3068757907717796|2.03|143.0|4|1|sense;AluSx1_dup44191|chr7:77058499-77058796:-|2.4242579282989007|0.1447624007977476|4.07|151.0|8|2|sense;AluJr_dup4116|chr1:146148509-146148813:-|2.5149217557996475|0.1449563314920023|4.12|151.0|12|3|sense;AluJr_dup70324|chr17:1551274-1551595:-|2.0241217357095302|0.1973510371474596|3.36|151.0|13|3|sense;AluSx1_dup3178|chr1:44527644-44527951:+|1.167101325874239|0.001986602724084|9.2|148.0|12|3|sense;AluSc8_dup6068|chr5:21490906-21491211:+|1.6303616396721212|0.0578912547365355|4.82|151.0|4|1|sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|9|2|sense;AluJb_dup108985|chr17:58265574-58265884:-|1.105951891051778|0.0026692216152215|8.69|143.0|14|3|sense;ENST00000323571.8_1_17:38438263-38438389:+|nuORF;AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|12|3|sense;L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|158|3|sense;AluSx_dup91527|chr16:22413633-22413939:-|1.1631420900961085|0.1614630633755779|2.85|151.0|9|2|sense;AluYj4_dup975|chr5:69921645-69921952:+|1.1053349709872842|0.0946308267150215|3.55|150.0|8|2|sense;AluY_dup18647|chr3:50038550-50038861:+|1.306953894077988|0.0639052227565405|4.35|151.0|8|2|sense;AluSx3_dup13849|chr7:155773286-155773595:+|1.0220558807349365|0.2470862649105239|2.05|151.0|5|1|sense;AluSz6_dup35643|chr14:77529613-77529877:-|2.4723117532484533|0.0337849508184891|6.19|151.0|3|1|sense;AluSz6_dup33173|chr12:118209703-118210001:-|1.4085312980056075|0.0052303843702154|8.07|151.0|3|1|sense;AluSq2_dup22371|chr7:5314564-5314871:-|1.7995736157511657|0.405396187068398|2.15|151.0|11|3|sense;AluSq2_dup9527|chr2:233073358-233073666:+|1.6018182733609276|0.0136492514005818|6.87|151.0|3|1|sense;PABL_A-int_dup377|chr19:21086913-21089283:-|1.6634001843570188|0.0444668435413478|5.23|150.0|101|1|anti-sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|14|3|sense;AluSc8_dup3025|chr2:177218046-177218361:-|1.594211535841337|0.4608551003115722|1.79|151.0|12|3|sense;AluJb_dup3860|chr1:44579761-44580057:+|1.25231940845851|0.0063332543240024|7.63|149.0|10|3|sense;AluSx1_dup95818|chr17:16056301-16056615:-|2.065512397684905|0.1457344396816498|3.83|151.0|11|3|sense;AluSq2_dup43808|chr13:110898743-110899056:-|1.107493960111305|0.3788332716746631|1.55|151.0|8|2|sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|3|1|sense;AluJo_dup20314|chr5:50414242-50414556:+|2.756491734077345|0.1513664192927431|4.19|151.0|10|2|sense;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|10|3|sense;AluJr_dup35012|chr7:139978661-139978970:+|1.3966061361821196|0.1173646958601732|3.57|151.0|2|1|sense;AluSq2_dup15563|chr4:168994746-168995056:-|1.1112800411118051|0.4884026382788179|1.19|151.0|16|3|sense;L1MB5_dup5717|chr10:114851214-114852065:-|1.2277754734251067|0.0530766954713818|4.53|151.0|55|3|anti-sense;HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|106|2|sense;L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|1|1|sense;L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|15|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|2|1|sense;AluJr_dup13759|chr3:33548760-33549054:-|1.2844856692523572|0.2441155484820085|2.4|151.0|5|1|sense;L1ME4a_dup28811|chr15:90019126-90019528:-|1.3220892467871113|0.0115155445825711|6.84|150.0|3|1|sense;AluJb_dup113840|chr19:2292244-2292425:+|1.5910565974324509|0.1735916492752556|3.2|151.0|7|3|sense;AluJb_dup119245|chr20:4007623-4007927:+|1.112108091038304|0.0081965775816425|7.08|151.0|5|2|sense;AluSz_dup54566|chrX:119627792-119628088:-|3.9988562726998|0.3533891028812816|3.5|151.0|6|1|sense;AluSx_dup114204|chr21:44870259-44870552:+|1.6238445145548843|0.294313648051127|2.46|151.0|11|3|sense;AluSz_dup69996|chr12:118356292-118356599:-|1.4493247081569405|0.011018770001781|7.04|151.0|13|3|sense;L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|3|1|sense;AluSc5_dup1372|chr3:152275429-152275733:+|1.1880608909720085|0.0271697228334584|5.45|151.0|10|3|sense;L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|42|3|sense;AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|11|3|sense;AluJr_dup69635|chr16:74320243-74320614:+|1.2429421601008936|0.222338958940668|2.48|151.0|9|3|sense;nc|ENSG00000070814|Q13428-4|TCOF1;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|132|3|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|12|3|sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|11|2|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|12|3|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|12|3|sense;AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|9|2|sense;AluY_dup69269|chr12:11716079-11716360:+|1.982692849277202|0.028475348221394|6.12|151.0|10|3|sense;AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|12|3|sense;AluSz_dup101182|chr22:20570716-20571059:-|1.1576492095995667|0.2927468985403856|1.98|151.0|3|1|sense;L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|21|1|sense;L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|96|2|sense;AluSx1_dup113502|chr21:34854410-34854613:+|1.316746649678359|0.0210558908533853|5.97|151.0|2|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|8|2|sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|85|2|sense;AluSq_dup8757|chr9:63818918-63819225:+|1.6372590274313554|0.3783450592878827|2.11|151.0|12|3|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|7|2|sense;AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|2|1|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|7|2|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|3|1|sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|6|1|sense;LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|60|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|17|1|sense;MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|28|2|anti-sense;HAL1_dup18606|chr14:91030509-91031839:+|1.072773244061545|0.0106939020978777|6.65|151.0|20|2|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|5|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|10|3|sense;AluSz_dup15863|chr2:233094231-233094542:+|1.0269162766044997|0.0184743699772234|5.8|151.0|13|3|sense;AluYk3_dup139|chr2:143373349-143373659:+|1.1220462748938869|0.008549976004168|7.04|151.0|10|2|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|9|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|11|3|sense;AluJb_dup144|chr1:1883020-1883308:+|1.2509263987826071|0.0177470246572713|6.14|151.0|4|1|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|4|1|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|14|3|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|8|2|sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|7|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|6|2|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|13|3|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|10|3|sense;AluSz6_dup43970|chr19:18276033-18276337:+|3.623460663323704|0.1072693206822565|5.08|151.0|10|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|4|1|sense;AluSx_dup45855|chr7:102350236-102350559:-|1.3383257480003994|0.1099067755241636|3.61|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|5|1|sense;AluSx1_dup57540|chrX:1476908-1477218:+|1.5401912601292471|0.0055350266363355|8.12|151.0|9|2|sense;AluY_dup33776|chr5:177071406-177071713:+|1.02189231345965|0.2899967782079396|1.82|151.0|14|3|sense;AluSx_dup105728|chr19:16215142-16215492:+|3.3226788042763227|0.0048115227787674|9.43|151.0|5|1|sense;AluJb_dup103405|chr16:68222008-68222318:+|1.256093874634295|0.221418073056072|2.5|151.0|14|3|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|9|2|sense;AluSx1_dup57521|chrX:1377905-1378212:+|1.0068473499471318|0.2546887527117152|1.98|151.0|7|2|sense;AluSq2_dup40943|chr12:68637316-68637628:+|2.4000488374294124|0.0607443242840496|5.3|151.0|11|2|sense;AluSq2_dup55405|chr19:14403865-14404178:-|2.878684995104099|0.1565804887290467|4.2|151.0|12|3|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|12|3|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|122|3|sense;ENSG00000129292|ENST00000395386|PHF20L1;L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;AluSz_dup81830|chr16:23886407-23886712:-|1.0275787602778554|0.0057945478849216|7.47|151.0|3|1|sense;AluSx_dup92120|chr16:29522513-29522821:+|1.3981196151557458|0.1355690585126194|3.37|150.0|10|3|sense;AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|13|3|sense;AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENSG00000111300|ENST00000261745|NAA25;L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense REV__L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|71|3|sense;REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense;L1M4c_dup260|chr2:43448118-43449571:+|1.664239762794557|0.022610718316387|6.2|151.0|75|2|anti-sense;AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense;AluSx_dup92239|chr16:30262495-30262825:+|2.0964973622023058|0.0934076906827367|4.49|150.0|10|3|sense;REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense;AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense;MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|6|2|sense;nc|ENSG00000167978|Q9UQ35-2|SRRM2;REV__AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|14|3|sense;ENSG00000111300|ENST00000261745|NAA25;L1MA2_dup6279|chr14:31608873-31612203:+|4.004991773926224|0.1151809230861619|5.12|151.0|50|2|sense;L1MEc_dup13957|chr12:116248829-116250481:+|2.611497974008033|0.0112136659905938|7.86|151.0|50|3|sense;REV__L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|82|2|sense nc|ENSG00000167978|Q9UQ35-2|SRRM2 MSMS UPN48_class_I_Rep_3 7 522.3744506835938 2 522.374218 1042.73388 NaN NaN NaN NaN NaN NaN NaN 108.67 1 112.35 111.85 112.85 3.6751 0 0 0 0.40798 1 25739 25739 0 0 1 33057 29907;51;303;30419;4340;16962;28456;9060;253;16354;1968;9418;13018;29927 21062 21073 37940 37940 0.2142257352722936 QKKKKKKKQKE 11 Unmodified _QKKKKKKKQKE_ 0 0 0 REV__L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|82|2|sense REV__L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|82|2|sense MSMS UPN48_class_I_Rep_1 5 476.7338562011719 3 476.983949 1427.93002 NaN NaN NaN NaN NaN NaN NaN 38.229 1 41.735 41.235 42.235 3.5052 0 0 0 0.38417 1 6596 6596 0.094841 0 1 + 33058 29927 21063 21074 37941 37941 0.23316913910457515 QKKKKKLII 9 Unmodified _QKKKKKLII_ 0 0 0 L1MC5_dup1838|chr2:171766691-171766982:+|1.0665512877947478|0.080456404013174|3.73|151.0|1|1|sense L1MC5_dup1838|chr2:171766691-171766982:+|1.0665512877947478|0.080456404013174|3.73|151.0|1|1|sense L1MC5_dup1838|chr2:171766691-171766982:+|1.0665512877947478|0.080456404013174|3.73|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 564.2753295898438 2 563.905351 1125.79615 NaN NaN NaN NaN NaN NaN NaN 31.529 1 35.23 34.73 35.73 3.7015 0 0 0 0.4029 1 4679 4679 0 0 1 33059 11677 21064 21075 37942 37942 0.23828299875572156 QKKKKTLL 8 Unmodified _QKKKKTLL_ 0 0 0 L1ME1_dup23156|chr12:116256023-116256615:+|1.15055340766647|0.0024874493691207|8.85|151.0|4|1|sense;L1ME3_dup8526|chr20:3952011-3953103:-|2.372965325835165|0.0289578894247626|6.36|151.0|57|2|anti-sense L1ME1_dup23156|chr12:116256023-116256615:+|1.15055340766647|0.0024874493691207|8.85|151.0|4|1|sense L1ME1_dup23156|chr12:116256023-116256615:+|1.15055340766647|0.0024874493691207|8.85|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 493.82769775390625 2 493.839677 985.664801 NaN NaN NaN NaN NaN NaN NaN 112.51 1 116.15 115.65 116.65 3.6321 0 0 0 0.40798 1 27309 27309 0 0 1 33060 12310 21065 21076 37943 37943 0.1713948950766735 QKKKRLRSKV 10 Unmodified _QKKKRLRSKV_ 0 0 0 REV__L1ME1_dup19054|chr10:11188403-11189062:-|7.549351459280904|0.0311320029326781|7.92|151.0|9|1|sense REV__L1ME1_dup19054|chr10:11188403-11189062:-|7.549351459280904|0.0311320029326781|7.92|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 635.9237670898438 2 635.925138 1269.83572 NaN NaN NaN NaN NaN NaN NaN 65.88 1 65.88 65.38 66.38 0 0 0 0 0.53105 1 14916 14916 0.40072 0 1 + 33061 27646 21066 21077 37944 37944 0.21159819878948838 QKKLSPRQ 8 Unmodified _QKKLSPRQ_ 0 0 0 REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|51|3|sense REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|51|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 492.3011474609375 2 492.801083 983.587613 0.1933 9.5259E-05 -0.71028 -0.00035003 -0.51698 -0.00025477 492.79879391568386 48.844 0.26302 52.561 52.496 52.76 3.7175 20 14 2 0 0 0 0.72333 1 9820 9820 4.3292 0 1 48806 + 33062 25549 21067 21078 37945 37945 0.09516271291317935 QKKQATPRLLP 11 Unmodified _QKKQATPRLLP_ 0 0 0 REV__Tigger1_dup1731|chr2:174136975-174138710:-|1.191955505785291|0.0853400322853645|3.8|151.0|13|1|sense REV__Tigger1_dup1731|chr2:174136975-174138710:-|1.191955505785291|0.0853400322853645|3.8|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 427.7724304199219 3 427.266345 1278.7772 -0.057933 -2.4753E-05 0.73897 0.00031574 0.68104 0.00029098 427.2666413278297 74.819 0.08326 78.309 78.28 78.364 3.49 7 5 2 0 0 0 22.551 1 17698 17698 1.0136 0.16863 1 77837 + 33063 32384 21068 21079 37946 37946 0.14896718513841734 QKKRERKSKRD 11 Unmodified _QKKRERKSKRD_ 0 0 0 REV__HERV9N-int_dup170|chr12:29169953-29171035:-|3.1086337561351067|0.2381617579793208|3.71|151.0|26|3|sense REV__HERV9N-int_dup170|chr12:29169953-29171035:-|3.1086337561351067|0.2381617579793208|3.71|151.0|26|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.29345703125 3 486.958574 1457.85389 0.21886 0.00010658 0.9697 0.00047221 1.1886 0.00057878 486.9589322571103 94.74 0.29144 98.147 97.993 98.285 3.4068 49 39 2 0 0 0 0.68132 1 23573 23573 0.40827 0.31342 1 100500 + 33064 23618 21069 21080 37947 37947 0.1432791006300249 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 633.3865966796875 2 633.386711 1264.75887 0.44661 0.00028288 0.17337 0.00010981 0.61998 0.00039269 633.3864782847464 85.225 0.4249 88.831 88.8 89.225 3.6059 72 48 2 0 0 0 0.46639 2 20377 20377;20402 3.5965 0.8613 1 213450 33065 11966 21070 21081 37948;37949 37948 0.13708021382490188 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 633.3695068359375 2 633.386711 1264.75887 0.44528 0.00028204 0.69478 0.00044007 1.1401 0.0007221 633.3868932034775 86.152 0.75278 89.765 89.232 89.985 3.613 107 82 2 0 0 0 0.46639 3 20679 20596;20613;20679 3.5965 0.15237 1 146000 33066 11966 21070 21081 37950;37951;37952 37952 0.13708021382490188 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.387451171875 2 633.386711 1264.75887 0.64068 0.0004058 0.5338 0.0003381 1.1745 0.0007439 633.3867989832102 85.086 0.69178 88.835 88.766 89.458 3.7494 112 91 2 0 0 0 0.46639 2 20211 20211;20308 3.5965 3.5965 1 272010 33067 11966 21070 21081 37953;37954 37953 0.13708021382490188 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.3878784179688 2 633.386711 1264.75887 0.63946 0.00040503 0.80548 0.00051018 1.4449 0.00091521 633.3870418227957 85.933 0.30302 89.703 89.479 89.782 3.7701 49 34 2 0 0 0 0.48618 1 20407 20407 1.4819 0 1 140280 33068 11966 21070 21081 37955 37955 0.13708021382490188 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 633.888671875 2 633.386711 1264.75887 0.63895 0.0004047 0.12635 8.003E-05 0.7653 0.00048473 633.3865467320203 86.156 0.36069 89.926 89.741 90.102 3.7701 74 43 2 0 0 0 0.46639 1 20447 20447 1.4819 0 1 116270 33069 11966 21070 21081 37956 37956 0.13708021382490188 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 633.386711 1264.75887 0.4951 0.00031359 0.28999 0.00018367 0.78508 0.00049726 633.3867369869371 85.338 0.28095 89.044 88.954 89.235 3.7058 0.14052 -0.00013545 NaN 3.5965 49 36 2 NaN NaN NaN NaN 0 NaN NaN 0 230670 33070 11966 21070 21081 0.13708021382490188 QKKRERRHK 9 Unmodified _QKKRERRHK_ 0 0 0 L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense L1MD1_dup5784|chr16:47212507-47213606:-|1.5888396323738383|0.0432167907204815|5.2|151.0|11|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 633.386711 1264.75887 0.64068 0.0004058 0.5338 0.0003381 1.1745 0.0007439 633.3867989832102 85.086 0.69178 88.835 88.766 89.458 3.7494 -0.068011 0.0001734 NaN 3.5965 112 91 2 NaN NaN NaN NaN 0 NaN NaN 0 272010 33071 11966 21070 21081 0.13708021382490188 QKKRLKTS 8 Unmodified _QKKRLKTS_ 0 0 0 REV__ENSG00000164061|ENST00000296452|BSN REV__ENSG00000164061|ENST00000296452|BSN MSMS UPN47_class_I_Rep_1 2 494.8169860839844 2 494.816733 987.618913 NaN NaN NaN NaN NaN NaN NaN 68.217 1 71.582 71.082 72.082 3.3646 0 0 0 0.40746 1 16453 16453 0.69038 0 1 + 33072 20025 21071 21082 37957 37957 0.12460844325437392 QKKRNRHP 8 Unmodified _QKKRNRHP_ 0 0 0 REV__L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|23|3|sense REV__L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 532.3163452148438 2 532.315223 1062.61589 0.48219 0.00025668 2.4833 0.0013219 2.9655 0.0015786 532.316285558662 110.58 0.19621 114.11 114.06 114.25 3.5271 36 24 2 0 0 0 0.82752 1 26918 26918 2.3027 0.4585 1 236140 + 33073 25371 21072 21083 37958 37958 0.0870901399127888 QKKRQRDR 8 Unmodified _QKKRQRDR_ 0 0 0 ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L ENST00000593845.5_1_19:15510111-15529746:-|nuORF ENST00000593845.5_1_19:15510111-15529746:-|nuORF MSMS UPN47_class_I_Rep_3 4 557.75146484375 2 557.831237 1113.64792 NaN NaN NaN NaN NaN NaN NaN 116.29 1 119.75 119.25 120.25 3.462 0 0 0 0.40746 1 28611 28611 0.69038 0 1 33074 770 21073 21084 37959 37959 0.09564381674408651 QKKVIKKKT 9 Unmodified _QKKVIKKKT_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS UPN47_class_I_Rep_3 4 550.8796997070312 2 550.879333 1099.74411 0.49882 0.00027479 0.37662 0.00020747 0.87544 0.00048226 550.8793847534625 108.36 0.17408 111.9 111.87 112.05 3.5382 39 17 4 0 0 0 0.48846 1 26532 26532 1.8442 0 1 11652000 33075 5157 21074 21085 37960 37960 0.19823136461809554 QKKVQKKAQR 10 Unmodified _QKKVQKKAQR_ 0 0 0 REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 621.3933715820312 2 621.39367 1240.77279 0.51168 0.00031796 -1.3448 -0.00083566 -0.83313 -0.0005177 621.3925871310843 97.248 0.078171 100.67 100.63 100.71 3.4216 12 9 2 0 0 0 0.56486 1 24114 24114 0.40072 0 1 53845 + 33076 22842 21075 21086 37961 37961 0.16203254090919472 QKKVQKKAQR 10 Unmodified _QKKVQKKAQR_ 0 0 0 REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 621.39367 1240.77279 0.6631 0.00041205 -1.4372 -0.00089307 -0.77411 -0.00048102 621.3927182464038 100.6 0.024078 100.6 100.59 100.61 0 0.036398 -0.00012742 NaN 0.40072 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 197650 + 33077 22842 21075 21086 0.16203254090919472 QKKVQKKAQR 10 Unmodified _QKKVQKKAQR_ 0 0 0 REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 621.39367 1240.77279 0.51168 0.00031796 -1.3448 -0.00083566 -0.83313 -0.0005177 621.3925871310843 97.248 0.078171 100.67 100.63 100.71 3.4216 0.10742 -1.2587E-05 NaN 0.40072 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 53845 + 33078 22842 21075 21086 0.16203254090919472 QKKVQKKAQR 10 Unmodified _QKKVQKKAQR_ 0 0 0 REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 621.39367 1240.77279 0.49314 0.00030643 -1.3225 -0.0008218 -0.82937 -0.00051537 621.3927340677926 96.655 0.56223 100.44 100.24 100.8 3.7804 -0.12635 1.513E-05 NaN 0.40072 154 71 3 NaN NaN NaN NaN 0 NaN NaN 0 733490 + 33079 22842 21075 21086 0.16203254090919472 QKKVQKKAQR 10 Unmodified _QKKVQKKAQR_ 0 0 0 REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF REV__ENST00000530562.5_1_11:74648079-74660104:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 621.39367 1240.77279 0.58781 0.00036526 -1.3404 -0.00083294 -0.75263 -0.00046768 621.3927358004534 96.636 0.37434 100.54 100.42 100.79 3.9084 -0.017469 -7.1614E-06 NaN 0.40072 132 49 3 NaN NaN NaN NaN 0 NaN NaN 0 847750 + 33080 22842 21075 21086 0.16203254090919472 QKKWLEFY 8 Unmodified _QKKWLEFY_ 0 0 0 ENST00000263955.8_1_2:197001783-197001954:-|nuORF ENST00000263955.8_1_2:197001783-197001954:-|nuORF ENST00000263955.8_1_2:197001783-197001954:-|nuORF MSMS UPN48_class_I_Rep_3 7 571.3060302734375 2 571.305667 1140.59678 NaN NaN NaN NaN NaN NaN NaN 32.253 1 35.954 35.454 36.454 3.7015 0 0 0 0.40746 1 4876 4876 0.69038 0 1 33081 5985 21076 21087 37962 37962 0.03210619856986341 QKKYNNKK 8 Unmodified _QKKYNNKK_ 0 0 0 nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17;nc|ENSG00000132972|Q9BXT8-2|RNF17;nc|ENSG00000132972|Q9BXT8-1|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 MSMS UPN48_class_I_Rep_3 7 525.7914428710938 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 30.066 1 33.795 33.295 34.295 3.7286 0 0 0 0.40625 1 4292 4292 2.3027 0 1 33082 2785 21077 21088 37963 37963 0.07536253945750104 QKLAKKKGG 9 Unmodified _QKLAKKKGG_ 0 0 0 REV__ENSG00000225528|ENST00000424496|TMA7B REV__ENSG00000225528|ENST00000424496|TMA7B MULTI-SECPEP UPN47_class_I_Rep_2 3 479.8002624511719 2 479.313826 956.613099 -0.22851 -0.00010953 -4.2956 -0.0020589 -4.5241 -0.0021685 479.31390835554936 15.288 0.17108 18.674 18.607 18.778 3.3864 33 19 3 0 0 0 0.12099 1 765 765 6.7232 1.9672 1 27355 + 33083 21289 21078 21089 37964 37964 0.13305745813761405 QKLEKQKKE 9 Unmodified _QKLEKQKKE_ 0 0 0 ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57 ENST00000539855.5_1_11:95532492-95564417:+|nuORF ENST00000539855.5_1_11:95532492-95564417:+|nuORF MSMS UPN46_class_I_Rep_3 1 579.8436889648438 2 579.845687 1157.67682 NaN NaN NaN NaN NaN NaN NaN 97.525 1 97.525 97.025 98.025 0 0 0 0 0.3967 1 23732 23732 1.4819 0.15237 1 33084 4213 21079 21090 37965 37965 0.10429061460149569 QKLFHLHI 8 Unmodified _QKLFHLHI_ 0 0 0 REV__nc|ENSG00000148634|Q5GLZ8-5|HERC4 REV__nc|ENSG00000148634|Q5GLZ8-5|HERC4 MSMS UPN48_class_I_Rep_3 7 518.3086547851562 2 518.308544 1034.60253 NaN NaN NaN NaN NaN NaN NaN 109.08 1 112.75 112.25 113.25 3.6751 0 0 0 0.40604 1 25886 25886 2.5775 0 1 + 33085 32010 21080 21091 37966 37966 0.08661763159329894 QKLFIKRQKE 10 Unmodified _QKLFIKRQKE_ 0 0 0 REV__HUERS-P1-int_dup254|chrX:9665540-9667030:+|1.40546153127713|0.1105229932495075|3.67|151.0|98|2|anti-sense REV__HUERS-P1-int_dup254|chrX:9665540-9667030:+|1.40546153127713|0.1105229932495075|3.67|151.0|98|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 439.27154541015625 3 439.938228 1316.79285 0.012301 5.4115E-06 4.2224 0.0018576 4.2347 0.001863 439.9400628503485 35.501 0.04908 39.011 38.999 39.048 3.5101 7 5 2 0 0 0 0.84575 1 5824 5824 0.77653 0 1 31873 + 33086 23971 21081 21092 37967 37967 0.14713005030898785 QKLFWLFA 8 Unmodified _QKLFWLFA_ 0 0 0 L1ME1_dup21295|chr11:77012442-77014015:+|1.6602957769782487|0.1566280270982397|3.41|151.0|116|3|anti-sense L1ME1_dup21295|chr11:77012442-77014015:+|1.6602957769782487|0.1566280270982397|3.41|151.0|116|3|anti-sense L1ME1_dup21295|chr11:77012442-77014015:+|1.6602957769782487|0.1566280270982397|3.41|151.0|116|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.7847290039062 2 526.80002 1051.58549 NaN NaN NaN NaN NaN NaN NaN 32.058 1 35.771 35.271 36.271 3.7131 0 0 0 0.40604 1 5466 5466 2.5775 0 1 33087 12296 21082 21093 37968 37968 0.06175842553511757 QKLGSIRPQ 9 Unmodified _QKLGSIRPQ_ 0 0 0 REV__AluJr_dup22501|chr5:70096449-70096739:-|1.2356687083794995|0.2752979308771767|2.17|151.0|22|3|anti-sense REV__AluJr_dup22501|chr5:70096449-70096739:-|1.2356687083794995|0.2752979308771767|2.17|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_3 7 513.8067016601562 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.28 115.78 116.78 3.6614 0 0 0 0.39598 1 26757 26757 1.6526 0 1 + 33088 17034 21083 21094 37969 37969 0.08640253945759468 QKLIPFHL 8 Unmodified _QKLIPFHL_ 0 0 0 REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense MSMS UPN47_class_I_Rep_1 2 498.2474365234375 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 42.403 1 46.082 45.582 46.582 3.6792 0 0 0 0.40581 1 8616 8616 2.8892 0 1 + 33089 24140 21084 21095 37970 37970 0.0988724492780193 QKLIPFHL 8 Unmodified _QKLIPFHL_ 0 0 0 REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense MSMS UPN48_class_I_Rep_1 5 498.3063049316406 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 51.861 1 55.384 54.884 55.884 3.5227 0 0 0 0.40738 1 10738 10738 0.79363 0 1 + 33090 24140 21084 21095 37971 37971 0.0988724492780193 QKLIPFHL 8 Unmodified _QKLIPFHL_ 0 0 0 REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|166|3|anti-sense MSMS UPN48_class_I_Rep_2 6 498.30584716796875 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 57.738 1 61.252 60.752 61.752 3.5142 0 0 0 0.40738 1 12513 12513 0.79363 0 1 + 33091 24140 21084 21095 37972 37972 0.0988724492780193 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN46_class_I_Rep_3 1 585.6732177734375 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 111.57 1 111.57 111.07 112.07 0 0 0 0 0.53105 1 27517 27517 0 0 1 33092 2681 21085 21096 37973 37973 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN46_class_I_Rep_3 1 585.3847045898438 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 111.74 1 111.74 111.24 112.24 0 0 0 0 0.53105 1 27560 27560 0 0 1 33093 2681 21085 21096 37974 37974 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN46_class_I_Rep_3 1 585.383544921875 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 115.27 1 115.27 114.77 115.77 0 0 0 0 0.53105 1 28507 28507 0 0 1 33094 2681 21085 21096 37975 37975 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_1 2 585.3839721679688 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.95 1 117.52 117.02 118.02 3.572 0 0 0 0.53105 1 28143 28143 0 0 1 33095 2681 21085 21096 37976 37976 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_2 3 585.2289428710938 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.11 1 116.63 116.13 117.13 3.5171 0 0 0 0.53105 1 27498 27498 0 0 1 33096 2681 21085 21096 37977 37977 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_2 3 585.3837890625 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.31 1 116.82 116.32 117.32 3.5171 0 0 0 0.53105 1 27555 27555 0 0 1 33097 2681 21085 21096 37978 37978 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_2 3 585.3849487304688 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 114.36 1 117.87 117.37 118.37 3.5109 0 0 0 0.53105 1 27847 27847 0 0 1 33098 2681 21085 21096 37979 37979 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_2 3 585.3842163085938 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 114.9 1 118.41 117.91 118.91 3.5039 0 0 0 0.53105 1 27996 27996 0 0 1 33099 2681 21085 21096 37980 37980 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_3 4 585.3847045898438 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.29 1 116.8 116.3 117.3 3.5098 0 0 0 0.53105 1 27784 27784 0 0 1 33100 2681 21085 21096 37981 37981 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_3 4 585.3846435546875 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.84 1 117.33 116.83 117.83 3.4963 0 0 0 0.53105 1 27934 27934 0 0 1 33101 2681 21085 21096 37982 37982 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_3 4 585.7380981445312 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 114.23 1 117.73 117.23 118.23 3.4963 0 0 0 0.53105 1 28040 28040 0 0 1 33102 2681 21085 21096 37983 37983 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN47_class_I_Rep_3 4 585.2213134765625 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 114.59 1 118.07 117.57 118.57 3.4802 0 0 0 0.53105 1 28146 28146 0 0 1 33103 2681 21085 21096 37984 37984 0.17671699396328222 QKLKALKIEV 10 Unmodified _QKLKALKIEV_ 0 0 0 nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 nc|ENSG00000130783|Q6P9F0-2|CCDC62 MSMS UPN48_class_I_Rep_2 6 585.3840942382812 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.36 1 117.03 116.53 117.53 3.663 0 0 0 0.53105 1 27053 27053 0 0 1 33104 2681 21085 21096 37985 37985 0.17671699396328222 QKLKGKTPPI 10 Unmodified _QKLKGKTPPI_ 0 0 0 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 MSMS UPN47_class_I_Rep_3 4 555.3536987304688 2 555.355691 1108.69683 NaN NaN NaN NaN NaN NaN NaN 92.253 1 95.657 95.157 96.157 3.4034 0 0 0 0.53105 1 23040 23040 2.9952 0.93549 1 33105 2767 21086 21097 37986 37986 0.14682857190791765 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS UPN47_class_I_Rep_1 2 647.4449462890625 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 108.21 1 111.84 111.34 112.34 3.6355 0 0 0 0.53105 1 26560 26560 1.6526 0 1 33106 4548 21087 21098 37987 37987 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MSMS UPN47_class_I_Rep_2 3 647.4454345703125 2 647.445706 1292.87686 0.6344 0.00041074 -0.63362 -0.00041024 0.00077416 5.0123E-07 647.4451702552003 107.85 0.057106 111.38 111.37 111.42 3.5345 6 4 2 0 0 0 0.56033 1 26118 26118 3.5965 0 1 1112700 33107 4548 21087 21098 37988 37988 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MSMS UPN48_class_I_Rep_1 5 647.4442749023438 2 647.445706 1292.87686 0.43865 0.000284 -0.90521 -0.00058608 -0.46656 -0.00030207 647.4448965624148 108.06 0.47457 111.69 111.43 111.91 3.6313 87 39 3 0 0 0 0.56486 1 26054 26054 0.40072 0 1 2819700 33108 4548 21087 21098 37989 37989 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MSMS UPN48_class_I_Rep_1 5 647.4448852539062 2 647.445706 1292.87686 0.43869 0.00028403 -0.39574 -0.00025622 0.042958 2.7813E-05 647.4451671510608 108.41 0.15655 112.04 111.95 112.11 3.6313 21 11 3 0 0 0 0.56333 1 26234 26234 1.4819 0 1 1109200 33109 4548 21087 21098 37990 37990 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MSMS UPN48_class_I_Rep_2 6 647.9475708007812 2 647.445706 1292.87686 0.50147 0.00032468 -0.91255 -0.00059083 -0.41108 -0.00026615 647.4449343719858 108.17 0.3595 111.84 111.72 112.08 3.6746 64 40 2 0 0 0 0.56033 1 25665 25665 3.5965 0 1 4137600 33110 4548 21087 21098 37991 37991 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS UPN48_class_I_Rep_3 7 647.4443969726562 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 107.86 1 111.55 111.05 112.05 3.6813 0 0 0 0.53105 1 25471 25471 6.7232 0 1 33111 4548 21087 21098 37992 37992 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS UPN48_class_I_Rep_3 7 647.4463500976562 2 647.445706 1292.87686 NaN NaN NaN NaN NaN NaN NaN 107.91 1 111.59 111.09 112.09 3.6813 0 0 0 0.53105 1 25487 25487 1.6526 0 1 33112 4548 21087 21098 37993 37993 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MATCH UPN47_class_I_Rep_1 2 2 647.445706 1292.87686 0.58446 0.0003784 -0.92919 -0.0006016 -0.34473 -0.00022319 647.4450554856599 107.9 0.092911 111.53 111.45 111.54 3.6355 0.019384 -3.1209E-05 NaN 3.5965 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2250900 33113 4548 21087 21098 0.2421358091842194 QKLKKKHKKK 10 Unmodified _QKLKKKHKKK_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MATCH UPN48_class_I_Rep_3 7 2 647.445706 1292.87686 0.65132 0.00042169 -1.0011 -0.00064815 -0.34978 -0.00022646 647.4450347240858 107.94 0.06015 111.63 111.6 111.66 3.6813 0.11225 -0.00012432 NaN 3.5965 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2626800 33114 4548 21087 21098 0.2421358091842194 QKLKKSKIKI 10 Unmodified _QKLKKSKIKI_ 0 0 0 REV__L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|4|1|sense REV__L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 405.284912109375 3 405.283336 1212.82818 NaN NaN NaN NaN NaN NaN NaN 88.302 1 91.69 91.19 92.19 3.3873 0 0 0 0.53105 1 22146 22146 0.15932 0 1 + 33115 24119 21088 21099 37994 37994 0.2302766755869925 QKLKKSKIKI 10 Unmodified _QKLKKSKIKI_ 0 0 0 REV__L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|4|1|sense REV__L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 405.3001708984375 3 405.283336 1212.82818 NaN NaN NaN NaN NaN NaN NaN 88.535 1 91.928 91.428 92.428 3.3931 0 0 0 0.53105 1 22205 22205 0.15932 0 1 + 33116 24119 21088 21099 37995 37995 0.2302766755869925 QKLKVIKV 8 Unmodified _QKLKVIKV_ 0 0 0 REV__L1MC4_dup4237|chr3:23818461-23818629:-|1.0255970178150389|0.0198356969996865|5.69|151.0|4|2|sense REV__L1MC4_dup4237|chr3:23818461-23818629:-|1.0255970178150389|0.0198356969996865|5.69|151.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 478.3362121582031 2 478.33677 954.658987 NaN NaN NaN NaN NaN NaN NaN 43.665 1 43.665 43.165 44.165 0 0 0 0 0.40746 1 8737 8737 0.69038 0 1 + 33117 26915 21089 21100 37996 37996 0.17984390995979993 QKLLKELRKL 10 Unmodified _QKLLKELRKL_ 0 0 0 REV__ENSG00000249115|ENST00000203166|HAUS5 REV__ENSG00000249115|ENST00000203166|HAUS5 MSMS UPN46_class_I_Rep_3 1 634.9223022460938 2 634.924272 1267.83399 NaN NaN NaN NaN NaN NaN NaN 61.438 1 61.438 60.938 61.938 0 0 0 0 0.53105 1 13673 13673 0.40072 0 1 + 33118 21348 21090 21101 37997 37997 0.21078766070331767 QKLNKFLNKL 10 Unmodified _QKLNKFLNKL_ 0 0 0 ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 623.3876342773438 2 623.387522 1244.76049 0.55244 0.00034438 -0.10677 -6.6559E-05 0.44567 0.00027782 623.3872824535689 108.92 0.092743 112.53 112.45 112.54 3.6046 24 8 4 0 0 0 0.54078 1 26809 26809 6.7232 0 1 10868000 33119 7047 21091 21102 37998 37998 0.14790217627887614 QKLNKFLNKL 10 Unmodified _QKLNKFLNKL_ 0 0 0 ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 623.3880615234375 2 623.387522 1244.76049 0.49383 0.00030785 0.33427 0.00020838 0.8281 0.00051623 623.3875320177227 108.72 0.62381 112.39 112.23 112.85 3.6746 140 65 3 0 0 0 0.54078 1 25928 25928 6.7232 0 1 17460000 33120 7047 21091 21102 37999 37999 0.14790217627887614 QKLNKFLNKL 10 Unmodified _QKLNKFLNKL_ 0 0 0 ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 623.388671875 2 623.387522 1244.76049 0.59275 0.00036951 0.30476 0.00018998 0.8975 0.00055949 623.3876056476042 108.66 0.48726 112.34 112.26 112.75 3.6751 117 53 3 0 0 0 0.54078 1 25716 25716 6.7232 0 1 22689000 33121 7047 21091 21102 38000 38000 0.14790217627887614 QKLNVLDP 8 Unmodified _QKLNVLDP_ 0 0 0 HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|247|1|anti-sense HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|247|1|anti-sense HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|247|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 464.2707214355469 2 463.768917 925.523281 0.21023 9.7498E-05 -0.94572 -0.0004386 -0.73549 -0.0003411 463.76839378033935 107.77 0.13081 111.44 111.37 111.5 3.6724 20 11 3 0 0 0 0.72333 1 26403 26403 8.5933 0 1 6137800 33122 8118 21092 21103 38001 38001 0.057540714145034144 QKLNVLDP 8 Unmodified _QKLNVLDP_ 0 0 0 HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|247|1|anti-sense HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|247|1|anti-sense HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|247|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 463.7680969238281 2 463.768917 925.523281 0.19131 8.8722E-05 -1.2516 -0.00058044 -1.0603 -0.00049172 463.76814924657793 107.75 0.15765 111.44 111.37 111.53 3.6813 27 15 3 0 0 0 0.82752 1 25428 25428 4.756 0 1 6137600 33123 8118 21092 21103 38002 38002 0.057540714145034144 QKLPGVYV 8 Unmodified _QKLPGVYV_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF;ENST00000566045.5_1_16:53529153-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS UPN46_class_I_Rep_3 1 452.26898193359375 2 452.268553 902.522553 0.15387 6.9591E-05 1.3605 0.00061531 1.5144 0.0006849 452.2690621739674 46.7 0.06366 46.7 46.68 46.744 0 7 3 3 0 0 0 0.82752 1 9598 9598 0.79363 0 1 3997100 33124 4281 21093 21104 38003 38003 0.06739276765472368 QKLPKLLM 8 Unmodified _QKLPKLLM_ 0 0 0 REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8111267089844 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 78.546 1 81.889 81.389 82.389 3.3428 0 0 0 0.40746 1 19514 19514 0.69038 0 1 + 33125 22480 21094 21105 38004 38004 0.11849055852917445 QKLPKLLM 8 Unmodified _QKLPKLLM_ 0 0 0 REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.8111572265625 2 485.809531 969.604509 NaN NaN NaN NaN NaN NaN NaN 113.71 1 117.37 116.87 117.87 3.663 0 0 0 0.40746 1 27148 27148 0.69038 0 1 + 33126 22480 21094 21105 38005 38005 0.11849055852917445 QKLPPNLMKTI 11 Unmodified _QKLPPNLMKTI_ 0 0 0 L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|44|2|sense L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|44|2|sense L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|44|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 641.8800659179688 2 641.881216 1281.74788 0.7499 0.00048135 1.6922 0.0010862 2.4421 0.0015675 641.8821505468109 92.505 0.20961 92.505 92.415 92.624 0 30 23 2 0 0 0 0.61292 1 22411 22411 4.897 1.9018 1 173900 33127 10527 21095 21106 38006 38006 0.11827438173349947 QKLPPNLMKTI 11 Unmodified _QKLPPNLMKTI_ 0 0 0 L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|44|2|sense L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|44|2|sense L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|44|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 641.881216 1281.74788 0.4437 0.0002848 1.801 0.001156 2.2447 0.0014408 641.8822035867834 88.829 0.41162 92.452 92.33 92.742 3.6229 -0.026651 3.4912E-05 NaN 4.897 62 49 2 NaN NaN NaN NaN 0 NaN NaN 0 238400 33128 10527 21095 21106 0.11827438173349947 QKLQTTLY 8 Unmodified _QKLQTTLY_ 0 0 0 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 REV__nc|ENSG00000116830|Q9UNY4-2|TTF2 MSMS UPN48_class_I_Rep_1 5 497.7827453613281 2 497.782025 993.549496 NaN NaN NaN NaN NaN NaN NaN 27.022 1 30.585 30.085 31.085 3.5629 0 0 0 0.40625 1 3414 3414 2.3027 0 1 + 33129 18616 21096 21107 38007 38007 0.05246340585995313 QKLRGFPPFL 10 Unmodified _QKLRGFPPFL_ 0 0 0 ENST00000318967.6_2_1:153700611-153701247:+|nuORF ENST00000318967.6_2_1:153700611-153701247:+|nuORF ENST00000318967.6_2_1:153700611-153701247:+|nuORF MSMS UPN48_class_I_Rep_3 7 601.8579711914062 2 601.855858 1201.69716 NaN NaN NaN NaN NaN NaN NaN 95.09 1 98.992 98.492 99.492 3.9016 0 0 0 0.53105 1 22538 22538 1.4819 0.15237 1 33130 6146 21097 21108 38008 38008 0.10438276910645072 QKLRHGLS 8 Unmodified _QKLRHGLS_ 0 0 0 REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|83|3|sense REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|83|3|sense MSMS UPN46_class_I_Rep_3 1 469.77874755859375 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 87.332 1 87.332 86.832 87.832 0 0 0 0 0.40643 1 20920 20920 2.0598 0 1 + 33131 28886 21098 21109 38009 38009 0.0744771560279105 QKLVGHGY 8 Unmodified _QKLVGHGY_ 0 0 0 AluSx_dup31765|chr5:76867585-76867881:-|1.5931410607032792|0.0056426218306464|8.14|149.0|5|2|sense AluSx_dup31765|chr5:76867585-76867881:-|1.5931410607032792|0.0056426218306464|8.14|149.0|5|2|sense AluSx_dup31765|chr5:76867585-76867881:-|1.5931410607032792|0.0056426218306464|8.14|149.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 451.2485046386719 2 451.248152 900.481751 NaN NaN NaN NaN NaN NaN NaN 60.075 1 63.348 62.848 63.848 3.2731 0 0 0 0.40581 1 14031 14031 2.8892 0.58649 1 33132 277 21099 21110 38010 38010 0.02752935445857929 QKLYDLAG 8 Unmodified _QKLYDLAG_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS UPN48_class_I_Rep_1 5 454.2581787109375 2 454.247818 906.481082 NaN NaN NaN NaN NaN NaN NaN 93.07 1 96.694 96.194 97.194 3.624 0 0 0 0.40643 1 22363 22363 2.0598 0 1 + 33133 19961 21100 21111 38011 38011 0.024100960061332444 QKMRFRYH 8 Unmodified _QKMRFRYH_ 0 0 0 REV__ENSG00000146555|ENST00000404826|SDK1 REV__ENSG00000146555|ENST00000404826|SDK1 MSMS UPN46_class_I_Rep_3 1 583.306640625 2 583.30601 1164.59747 NaN NaN NaN NaN NaN NaN NaN 70.604 1 70.604 70.104 71.104 0 0 0 0 0.40746 1 16233 16233 0.69038 0 1 + 33134 19545 21101 21112 38012 38012 0.021751360250618745 QKNFFAHY 8 Unmodified _QKNFFAHY_ 0 0 0 ENSG00000088179|ENST00000263708|PTPN4;ENST00000433888.5_1_2:120658314-120677815:+|nuORF ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 MSMS UPN47_class_I_Rep_2 3 527.7595825195312 2 527.758884 1053.50321 NaN NaN NaN NaN NaN NaN NaN 115.29 1 118.79 118.29 119.29 3.5039 0 0 0 0.40738 1 28106 28106 0.79363 0 1 33135 1305 21102 21113 38013 38013 -0.02139679525430438 QKNKVRKFHL 10 Unmodified _QKNKVRKFHL_ 0 0 0 REV__MER58C_dup32|chr1:36478150-36478246:+|1.7409986493386884|0.1186266725479594|3.88|151.0|4|3|sense REV__MER58C_dup32|chr1:36478150-36478246:+|1.7409986493386884|0.1186266725479594|3.88|151.0|4|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 432.8850402832031 3 433.266568 1296.77787 -1.1467 -0.00049682 -0.4304 -0.00018648 -1.5771 -0.0006833 433.26629511857135 24.116 1.3631 27.466 27.032 28.396 3.3509 217 109 3 0 0 0 0.84575 1 3131 3131 1.7423 0 1 162220 + 33136 31473 21103 21114 38014 38014 0.14135557953568423 QKNPFYKIQ 9 Unmodified _QKNPFYKIQ_ 0 0 0 REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|92|3|sense REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|92|3|sense MSMS UPN47_class_I_Rep_2 3 583.3218994140625 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 46.417 1 49.768 49.268 50.268 3.3515 0 0 0 0.39518 1 9872 9872 1.8442 0 1 + 33137 29522 21104 21115 38015 38015 0.053414072599935025 QKNVRKAI 8 Unmodified _QKNVRKAI_ 0 0 0 CON__Q3T052 CON__Q3T052 CON__Q3T052 MSMS UPN47_class_I_Rep_3 4 478.8027038574219 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 28.871 1 32.205 31.705 32.705 3.3337 0 0 0 0.40746 1 4588 4588 0.69038 0 1 + 33138 654 21105 21116 38016 38016 0.11312575153931448 QKNVSEEL 8 Unmodified _QKNVSEEL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS UPN48_class_I_Rep_2 6 473.7475891113281 2 473.745639 945.476725 NaN NaN NaN NaN NaN NaN NaN 67.402 1 70.899 70.399 71.399 3.4964 0 0 0 0.38444 1 15475 15475 13.906 0 1 33139 5270 21106 21117 38017 38017 0.0018058679257819676 QKPKKYVSLK 10 Unmodified _QKPKKYVSLK_ 0 0 0 REV__ENST00000475613.6_1_10:79580836-79628876:-|nuORF REV__ENST00000475613.6_1_10:79580836-79628876:-|nuORF MSMS UPN47_class_I_Rep_3 4 609.8822021484375 2 609.882073 1217.74959 NaN NaN NaN NaN NaN NaN NaN 108.92 1 112.46 111.96 112.96 3.5382 0 0 0 0.53105 1 26722 26722 5.7319 0 1 + 33140 19648 21107 21118 38018 38018 0.14942815253607478 QKPKRAKKKK 10 Unmodified _QKPKRAKKKK_ 0 0 0 L1PA13_dup2255|chr4:129009539-129012989:-|5.27796810394162|0.1113957280860784|5.57|151.0|4|1|sense L1PA13_dup2255|chr4:129009539-129012989:-|5.27796810394162|0.1113957280860784|5.57|151.0|4|1|sense L1PA13_dup2255|chr4:129009539-129012989:-|5.27796810394162|0.1113957280860784|5.57|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 620.4227905273438 2 620.422231 1238.82991 NaN NaN NaN NaN NaN NaN NaN 88.908 1 92.646 92.146 93.146 3.7379 0 0 0 0.53105 1 21167 21167 0.40072 0.1317 1 33141 13742 21108 21119 38019 38019 0.22004721367306956 QKPKTKRI 8 Unmodified _QKPKTKRI_ 0 0 0 L1M4_dup8357|chr7:155648707-155650201:-|1.831365129494712|0.0189360955784753|6.6|151.0|52|3|sense L1M4_dup8357|chr7:155648707-155650201:-|1.831365129494712|0.0189360955784753|6.6|151.0|52|3|sense L1M4_dup8357|chr7:155648707-155650201:-|1.831365129494712|0.0189360955784753|6.6|151.0|52|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.3290710449219 2 499.827101 997.639649 -0.60062 -0.00030021 0.27201 0.00013596 -0.32861 -0.00016425 499.8271123082513 16.461 1.1919 19.823 19.461 20.653 3.3619 271 138 2 0 0 0 0.82752 1 1207 1207 0.69038 0 1 123650 33142 8920 21109 21120 38020 38020 0.14073434705096588 QKPMEILK 8 Unmodified _QKPMEILK_ 0 0 0 L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|90|2|sense L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|90|2|sense L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|90|2|sense MSMS UPN47_class_I_Rep_1 2 493.7900695800781 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 114.33 1 117.91 117.41 118.41 3.5809 0 0 0 0.40746 1 28248 28248 0.69038 0 1 33143 14169 21110 21121 38021 38021 0.06967875093596376 QKPVEEDEF 9 Unmodified _QKPVEEDEF_ 0 0 0 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MSMS UPN48_class_I_Rep_1 5 560.787109375 2 560.761486 1119.50842 NaN NaN NaN NaN NaN NaN NaN 65.266 1 68.72 68.22 69.22 3.4541 0 0 0 0.38639 1 14837 14837 3.9444 0.3479 1 + 33144 19583 21111 21122 38022 38022 -0.046554652441500366 QKQDEIHFF 9 Unmodified _QKQDEIHFF_ 0 0 0 HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 596.2936401367188 2 596.293288 1190.57202 0.06638 3.9582E-05 -0.12025 -7.1703E-05 -0.053869 -3.2122E-05 596.2928663299907 41.995 0.24713 45.235 45.153 45.4 3.2394 29 20 2 0 0 0 0.48414 1 8566 8566 2.3027 0 1 50428 33145 8431 21112 21123 38023 38023 -0.015640600164033458 QKQDEIHFF 9 Unmodified _QKQDEIHFF_ 0 0 0 HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 596.293288 1190.57202 0.0096964 5.7819E-06 0.54279 0.00032366 0.55248 0.00032944 596.7950660074664 41.347 0.51859 45.019 44.841 45.36 3.6719 -0.11394 0.00026075 NaN 2.3027 63 36 2 NaN NaN NaN NaN 0 NaN NaN 0 142030 33146 8431 21112 21123 -0.015640600164033458 QKQDEIHFF 9 Unmodified _QKQDEIHFF_ 0 0 0 HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 596.293288 1190.57202 0.058503 3.4885E-05 0.0761 4.5378E-05 0.1346 8.0263E-05 596.2931884053241 41.78 0.48737 45.146 44.88 45.368 3.3655 0.012402 -0.00029582 NaN 2.3027 49 34 2 NaN NaN NaN NaN 0 NaN NaN 0 73226 33147 8431 21112 21123 -0.015640600164033458 QKQDEIHFF 9 Unmodified _QKQDEIHFF_ 0 0 0 HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense HSMAR2_dup148|chr2:19960908-19962207:+|1.0049845523182983|0.3155753342579126|1.67|148.0|66|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 596.293288 1190.57202 0.06638 3.9582E-05 -0.12025 -7.1703E-05 -0.053869 -3.2122E-05 596.2928663299907 41.995 0.24713 45.235 45.153 45.4 3.2394 0.10154 -0.00052998 NaN 2.3027 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 50428 33148 8431 21112 21123 -0.015640600164033458 QKQGLLVGI 9 Unmodified _QKQGLLVGI_ 0 0 0 ENSG00000272636|ENST00000613549|DOC2B ENSG00000272636|ENST00000613549|DOC2B ENSG00000272636|ENST00000613549|DOC2B MULTI-MSMS UPN47_class_I_Rep_3 4 478.8025207519531 2 478.300384 954.586216 0.061956 2.9634E-05 0.3635 0.00017386 0.42545 0.00020349 478.3005619076289 68.389 0.51582 71.587 71.234 71.75 3.1977 47 32 2 0 0 0 0.41259 1 16519 16519 7.2892 0 1 116300 33149 5814 21113 21124 38024 38024 0.10710637202578255 QKQKTKIY 8 Unmodified _QKQKTKIY_ 0 0 0 L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|12|1|sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|12|1|sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|12|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 518.3086547851562 2 518.811116 1035.60768 0.37295 0.00019349 -1.0903 -0.00056565 -0.71733 -0.00037216 518.8100934733626 108.86 1.3322 112.53 112.51 113.84 3.6751 287 177 2 0 0 0 0.72333 1 25849 25849 8.5933 0 1 33734000 33150 15129 21114 21125 38025 38025 0.09130022231283874 QKQLPPRK 8 Unmodified _QKQLPPRK_ 0 0 0 REV__L1M2_dup4960|chr9:90884996-90886422:+|5.908336750686133|0.3008089654769183|4.3|151.0|28|3|sense REV__L1M2_dup4960|chr9:90884996-90886422:+|5.908336750686133|0.3008089654769183|4.3|151.0|28|3|sense MSMS UPN47_class_I_Rep_2 3 498.2856750488281 2 497.811451 993.608348 NaN NaN NaN NaN NaN NaN NaN 20.346 1 23.754 23.254 24.254 3.4074 0 0 0 0.40746 1 2094 2094 0.69038 0 1 + 33151 24217 21115 21126 38026 38026 0.11128861670999868 QKQLWKWHRW 10 Unmodified _QKQLWKWHRW_ 0 0 0 L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|29|3|sense L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|29|3|sense L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|29|3|sense MSMS UPN47_class_I_Rep_2 3 499.2718505859375 3 499.273834 1494.79967 NaN NaN NaN NaN NaN NaN NaN 20.171 1 23.567 23.067 24.067 3.3963 0 0 0 0.53105 1 2045 2045 0.77653 0.27058 1 33152 13090 21116 21127 38027 38027 0.07206362702095248 QKQWPQYQ 8 Unmodified _QKQWPQYQ_ 0 0 0 REV__L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|16|1|sense REV__L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|16|1|sense MSMS UPN47_class_I_Rep_3 4 553.2752075195312 2 553.274898 1104.53524 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.4 116.9 117.9 3.4963 0 0 0 0.40746 1 27954 27954 0.69038 0 1 + 33153 30071 21117 21128 38028 38028 -0.012843118423006672 QKRAPFVLW 9 Unmodified _QKRAPFVLW_ 0 0 0 L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|26|1|anti-sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|26|1|anti-sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 572.8355712890625 2 572.834926 1143.6553 NaN NaN NaN NaN NaN NaN NaN 102.12 1 105.91 105.41 106.41 3.7888 0 0 0 0.40038 1 25152 25152 0.6015 0.076735 1 33154 13439 21118 21129 38029 38029 0.08921721222122869 QKRFDFIPMD 10 Unmodified _QKRFDFIPMD_ 0 0 0 MER21A_dup1721|chr17:75142909-75143277:+|1.0454935840553674|0.1170157877480742|3.16|151.0|22|3|anti-sense MER21A_dup1721|chr17:75142909-75143277:+|1.0454935840553674|0.1170157877480742|3.16|151.0|22|3|anti-sense MER21A_dup1721|chr17:75142909-75143277:+|1.0454935840553674|0.1170157877480742|3.16|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_3 7 432.8851318359375 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 103.03 1 106.78 106.28 107.28 3.7434 0 0 0 0.53105 1 24342 24342 0.62683 0 1 33155 15851 21119 21130 38030 38030 -0.0027487130862482445 QKRKILGQ 8 Unmodified _QKRKILGQ_ 0 0 0 L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|27|2|sense L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|27|2|sense L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 485.8120422363281 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 112.31 1 115.98 115.48 116.48 3.6614 0 0 0 0.40746 1 26682 26682 0.69038 0 1 33156 13714 21120 21131 38031 38031 0.12232861671009232 QKRKLQLG 8 Unmodified _QKRKLQLG_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MSMS UPN47_class_I_Rep_1 2 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57 1 60.458 59.958 60.958 3.4572 0 0 0 0.40746 1 13062 13062 0.69038 0 1 33157 5329 21121 21132 38032 38032 0.12232861671009232 QKRKLQLG 8 Unmodified _QKRKLQLG_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MSMS UPN47_class_I_Rep_1 2 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.475 1 60.912 60.412 61.412 3.437 0 0 0 0.40604 1 13200 13200 2.5775 0 1 33158 5329 21121 21132 38033 38033 0.12232861671009232 QKRKLQLG 8 Unmodified _QKRKLQLG_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MSMS UPN47_class_I_Rep_1 2 485.8121032714844 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.552 1 68.907 68.407 69.407 3.3557 0 0 0 0.40746 1 15644 15644 0.69038 0 1 33159 5329 21121 21132 38034 38034 0.12232861671009232 QKRKLQLG 8 Unmodified _QKRKLQLG_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MULTI-MSMS UPN47_class_I_Rep_3 4 485.81182861328125 2 485.811451 969.608348 0.13559 6.5872E-05 0.632 0.00030703 0.76759 0.0003729 485.81171443736446 65.512 0.4678 68.692 68.672 69.14 3.1795 43 27 2 0 0 0 0.82752 1 15807 15807 0.69038 0 1 4491500 33160 5329 21121 21132 38035 38035 0.12232861671009232 QKRKLQLG 8 Unmodified _QKRKLQLG_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MSMS UPN47_class_I_Rep_3 4 485.811767578125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.604 1 60.772 60.272 61.272 3.1681 0 0 0 0.40746 1 13323 13323 0.69038 0 1 33161 5329 21121 21132 38036 38036 0.12232861671009232 QKRKRRVLHK 10 Unmodified _QKRKRRVLHK_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|119|3|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|119|3|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|119|3|sense MSMS UPN48_class_I_Rep_2 6 450.29595947265625 3 450.296861 1347.86875 NaN NaN NaN NaN NaN NaN NaN 53.539 1 57.149 56.649 57.649 3.6098 0 0 0 0.53105 1 11231 11231 0.15932 0 1 33162 13584 21122 21133 38037 38037 0.2087344672168001 QKRLKTVL 8 Unmodified _QKRLKTVL_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.32904052734375 2 493.329476 984.6444 -0.32586 -0.00016076 0.15299 7.5474E-05 -0.17287 -8.5282E-05 493.3294878421377 20.945 0.74136 24.589 24.252 24.994 3.6436 140 80 2 0 0 0 0.82752 1 2267 2267 13.508 0 1 143820 33163 2905 21123 21134 38038 38038 0.15146318847837392 QKRLKTVL 8 Unmodified _QKRLKTVL_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MSMS UPN47_class_I_Rep_2 3 493.3297119140625 2 493.329476 984.6444 -0.11878 -5.8598E-05 -0.15638 -7.7148E-05 -0.27516 -0.00013575 493.3293635152112 21.525 1.1546 24.949 24.519 25.673 3.4241 188 126 2 0 0 0 0.82752 1 2411 2411 16.942 0 1 99396 33164 2905 21123 21134 38039 38039 0.15146318847837392 QKRLRIRWV 9 Unmodified _QKRLRIRWV_ 0 0 0 REV__MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|13|3|anti-sense REV__MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|13|3|anti-sense MSMS UPN46_class_I_Rep_3 1 627.9002075195312 2 627.898923 1253.78329 NaN NaN NaN NaN NaN NaN NaN 61.428 1 61.428 60.928 61.928 0 0 0 0 0.4007 1 13670 13670 0.52476 0.12405 1 + 33165 31804 21124 21135 38040 38040 0.1665528153600917 QKRLVRPGV 9 Unmodified _QKRLVRPGV_ 0 0 0 LTR9A1_dup7|chr1:93289469-93290102:-|1.1298976548792583|0.0342642023372613|5.04|151.0|22|1|anti-sense LTR9A1_dup7|chr1:93289469-93290102:-|1.1298976548792583|0.0342642023372613|5.04|151.0|22|1|anti-sense LTR9A1_dup7|chr1:93289469-93290102:-|1.1298976548792583|0.0342642023372613|5.04|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7903442382812 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 58.401 1 61.683 61.183 62.183 3.2818 0 0 0 0.4007 1 13517 13517 0.52476 0 1 33166 15730 21125 21136 38041 38041 0.1376823945365686 QKRNAVVK 8 Unmodified _QKRNAVVK_ 0 0 0 ENSG00000170234.13,PWWP2A,chr5,-,I5.1,160078169,160080650|30|4.26|2|intron;nc|ENSG00000170234|Q96N64-3|PWWP2A;nc|ENSG00000170234|Q96N64-2|PWWP2A;ENSG00000170234.13,PWWP2A,chr5,-,I5.1,160078169,160080650|30|4.26|1|intron;ENSG00000170234|ENST00000307063|PWWP2A ENSG00000170234.13,PWWP2A,chr5,-,I5.1,160078169,160080650|30|4.26|2|intron ENSG00000170234.13,PWWP2A,chr5,-,I5.1,160078169,160080650|30|4.26|2|intron MSMS UPN48_class_I_Rep_3 7 471.79632568359375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 75.699 1 79.265 78.765 79.765 3.5659 0 0 0 0.40625 1 17800 17800 2.3027 0 1 33167 4461 21126 21137 38042 38042 0.10392288636899139 QKRPGNTKVS 10 Unmodified _QKRPGNTKVS_ 0 0 0 REV__ENSG00000250254|ENST00000504686|PTTG2 REV__ENSG00000250254|ENST00000504686|PTTG2 MSMS UPN47_class_I_Rep_3 4 557.8182983398438 2 557.820004 1113.62546 NaN NaN NaN NaN NaN NaN NaN 38.987 1 42.225 41.725 42.725 3.238 0 0 0 0.53105 1 7652 7652 1.3295 0.63916 1 + 33168 21355 21127 21138 38043 38043 0.07318737486139071 QKRRHLRIV 9 Unmodified _QKRRHLRIV_ 0 0 0 REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF MSMS UPN48_class_I_Rep_2 6 603.30078125 2 603.388722 1204.76289 NaN NaN NaN NaN NaN NaN NaN 57.458 1 60.972 60.472 61.472 3.5142 0 0 0 0.4007 1 12429 12429 0.52476 0 1 + 33169 20258 21128 21139 38044 38044 0.1687011087619794 QKRRHLRIV 9 Unmodified _QKRRHLRIV_ 0 0 0 REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF MSMS UPN48_class_I_Rep_3 7 603.3873291015625 2 603.388722 1204.76289 NaN NaN NaN NaN NaN NaN NaN 57.103 1 60.646 60.146 61.146 3.5427 0 0 0 0.4007 1 12255 12255 0.52476 0 1 + 33170 20258 21128 21139 38045 38045 0.1687011087619794 QKRRRRKHKR 10 Unmodified _QKRRRRKHKR_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_1 5 483.9812316894531 3 483.646776 1447.9185 0.12091 5.8479E-05 -0.16205 -7.8375E-05 -0.041138 -1.9896E-05 483.9810257486809 47.524 1.9144 51.046 50.484 52.399 3.5219 403 137 3 0 0 0 0.56444 1 9406 9406 0.69767 0.53834 1 2739200 + 33171 18352 21129 21140 38046 38046 0.21245574450313143 QKRRRRKHKR 10 Unmodified _QKRRRRKHKR_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP UPN48_class_I_Rep_2 6 482.9747619628906 3 483.646776 1447.9185 0.24276 0.00011741 -1.914 -0.00092571 -1.6713 -0.0008083 483.6452560127999 51.24 0.16969 54.908 54.798 54.968 3.6679 12 10 2 0 0 0 0.84575 1 10515 10515 0.69767 0.24315 1 53602 + 33172 18352 21129 21140 38047 38047 0.21245574450313143 QKRRRRKHKR 10 Unmodified _QKRRRRKHKR_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 483.646776 1447.9185 0.10541 5.0981E-05 -0.30636 -0.00014817 -0.20095 -9.719E-05 483.64653924576527 47.84 0.056812 51.189 51.154 51.211 3.3492 0.043498 -0.00019864 NaN 0.69767 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 117320 + 33173 18352 21129 21140 0.21245574450313143 QKRRRRKHKR 10 Unmodified _QKRRRRKHKR_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 483.646776 1447.9185 0.052556 2.5418E-05 0.11461 5.5433E-05 0.16717 8.0851E-05 483.9812013644671 47.917 0.10064 51.158 51.134 51.235 3.2405 0.011921 0.00041217 NaN 0.69767 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 123860 + 33174 18352 21129 21140 0.21245574450313143 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 472.28857421875 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.749 1 91.386 90.886 91.886 3.6372 0 0 0 0.40404 1 21932 21932 5.2307 2.3415 1 33175 15593 21130 21141 38048 38048 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 472.2769470214844 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.54 1 92.196 91.696 92.696 3.6563 0 0 0 0.40404 1 22141 22141 5.2307 0.47466 1 33176 15593 21130 21141 38049 38049 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 472.28729248046875 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.697 1 91.144 90.644 91.644 3.4471 0 0 0 0.40404 1 21801 21801 5.2307 2.3415 1 33177 15593 21130 21141 38050 38050 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.28753662109375 2 472.287808 942.561064 0.042289 1.9972E-05 0.15924 7.5205E-05 0.20152 9.5178E-05 472.28781187947413 86.357 1.084 89.737 89.272 90.356 3.3801 455 136 5 0 0 0 0.82752 1 21769 21769 2.5775 0 1 4897600 33178 15593 21130 21141 38051 38051 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2877197265625 2 472.287808 942.561064 0.043297 2.0449E-05 0.021746 1.027E-05 0.065044 3.0719E-05 472.2877108955382 87.279 0.14705 90.659 90.611 90.758 3.3801 30 18 2 0 0 0 0.82752 1 21884 21884 2.5775 0 1 141770 33179 15593 21130 21141 38052 38052 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2878112792969 2 472.287808 942.561064 0.044715 2.1118E-05 0.20186 9.5338E-05 0.24658 0.00011646 472.2877261454627 87.428 0.11932 90.816 90.765 90.884 3.3873 27 14 3 0 0 0 0.82752 1 21917 21917 2.5775 0 1 172350 33180 15593 21130 21141 38053 38053 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.2877502441406 2 472.287808 942.561064 0.10046 4.7445E-05 0.090671 4.2823E-05 0.19113 9.0268E-05 472.287871304699 86.034 1.0265 89.647 89.192 90.218 3.613 446 117 5 0 0 0 0.82752 1 20722 20722 2.5775 0 1 10592000 33181 15593 21130 21141 38054 38054 0.08748582400005489 QKRSAQLL 8 Unmodified _QKRSAQLL_ 0 0 0 LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense LTR1D1_dup226|chr10:74673344-74674202:-|1.4177126986608686|0.0425212638475731|5.06|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 472.2884521484375 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.335 1 92.063 91.563 92.563 3.7279 0 0 0 0.40604 1 21030 21030 2.5775 0 1 33182 15593 21130 21141 38055 38055 0.08748582400005489 QKSKTTNT 8 Unmodified _QKSKTTNT_ 0 0 0 L1MA8_dup9772|chr17:28779080-28779469:+|1.0932564544982564|0.048632512644737|4.49|151.0|3|2|sense L1MA8_dup9772|chr17:28779080-28779469:+|1.0932564544982564|0.048632512644737|4.49|151.0|3|2|sense L1MA8_dup9772|chr17:28779080-28779469:+|1.0932564544982564|0.048632512644737|4.49|151.0|3|2|sense MSMS UPN47_class_I_Rep_1 2 454.2460632324219 2 454.245806 906.47706 NaN NaN NaN NaN NaN NaN NaN 82.86 1 86.399 85.899 86.899 3.5386 0 0 0 0.40625 1 20710 20710 2.3027 0 1 33183 10075 21131 21142 38056 38056 0.020080065124375324 QKSLKTFKKLK 11 Unmodified _QKSLKTFKKLK_ 0 0 0 L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|49|2|sense L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|49|2|sense L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|49|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 450.2315979003906 3 450.294012 1347.86021 0.08422 3.7924E-05 3.5292 0.0015892 3.6134 0.0016271 450.63002881419845 47.958 0.067486 51.591 51.54 51.608 3.6339 5 3 2 0 0 0 22.551 1 9457 9457 0.40827 0 1 54448 33184 9527 21132 21143 38057 38057 0.20019035241807615 QKSNLARVFW 10 Unmodified _QKSNLARVFW_ 0 0 0 ENSG00000187764|ENST00000422704|SEMA4D ENSG00000187764|ENST00000422704|SEMA4D ENSG00000187764|ENST00000422704|SEMA4D MSMS UPN48_class_I_Rep_3 7 624.8482666015625 2 624.846022 1247.67749 NaN NaN NaN NaN NaN NaN NaN 50.82 1 54.43 53.93 54.93 3.6105 0 0 0 0.53105 1 10351 10351 1.4819 0.51963 1 33185 5205 21133 21144 38058 38058 0.0635590089989364 QKSPVFYV 8 Unmodified _QKSPVFYV_ 0 0 0 L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|369|3|anti-sense L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|369|3|anti-sense L1PA4_dup10841|chr16:47437711-47443907:+|1.2933790611948548|0.147448606735052|3.13|151.0|369|3|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2669677734375 2 484.26601 966.517468 NaN NaN NaN NaN NaN NaN NaN 90.878 1 94.725 94.225 95.225 3.847 0 0 0 0.40738 1 21552 21552 0.79363 0 1 33186 14308 21134 21145 38059 38059 0.03286972902856178 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 639.8435668945312 2 639.843676 1277.6728 0.74534 0.0004769 -0.090739 -5.8059E-05 0.6546 0.00041884 639.8434869664027 95.393 0.33565 95.393 95.086 95.422 0 86 31 3 0 0 0 0.35213 1 23106 23106 11.495 3.3392 1 51236000 33187 11133 21135 21146 38060 38060 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 639.8446655273438 2 639.843676 1277.6728 0.74529 0.00047687 -0.034315 -2.1956E-05 0.71097 0.00045491 639.8434096950311 102.78 0.13647 102.78 102.66 102.8 0 42 16 3 0 0 0 0.50573 1 25076 25076 7.609 1.8771 1 1472800 33188 11133 21135 21146 38061 38061 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 639.84375 2 639.843676 1277.6728 0.74708 0.00047801 -1.423 -0.00091049 -0.6759 -0.00043247 639.8433240689162 102.89 0.3562 102.89 102.79 103.15 0 154 39 8 0 0 0 0.50573 1 25134 25134 7.609 0.50723 1 38453000 33189 11133 21135 21146 38062 38062 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 639.8441162109375 2 639.843676 1277.6728 0.56028 0.00035849 -0.45027 -0.0002881 0.11001 7.0387E-05 639.8435882091574 91.605 0.79584 95.311 94.906 95.701 3.7053 621 112 8 0 0 0 0.35213 2 22851 22851;22876 11.495 3.3392 1 35873000 33190 11133 21135 21146 38063;38064 38063 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 639.8435668945312 2 639.843676 1277.6728 0.5756 0.00036829 -0.25546 -0.00016346 0.32014 0.00020484 639.8434456825404 98.761 0.65902 102.55 102.23 102.89 3.7926 307 94 5 0 0 0 0.50573 3 24403 24403;24431;24458 7.609 0.50723 1 2000400 33191 11133 21135 21146 38065;38066;38067 38065 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 639.8440551757812 2 639.843676 1277.6728 0.61026 0.00039047 -0.30523 -0.0001953 0.30504 0.00019518 639.8435387244677 91.656 0.79669 95.117 94.729 95.525 3.4613 584 117 7 0 0 0 0.35213 1 22709 22709 11.495 3.3392 1 27934000 33192 11133 21135 21146 38068 38068 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 639.843994140625 2 639.843676 1277.6728 0.63458 0.00040603 -0.18342 -0.00011736 0.45116 0.00028867 639.8434929286079 98.864 0.55855 102.35 102.01 102.57 3.4897 153 82 3 0 0 0 0.50573 3 24210 24210;24235;24260 7.609 1.8771 1 5084000 33193 11133 21135 21146 38069;38070;38071 38069 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 639.8424682617188 2 639.843676 1277.6728 0.63448 0.00040597 -0.59214 -0.00037887 0.042346 2.7095E-05 639.8434134013927 99.111 0.072105 102.6 102.56 102.64 3.4897 15 10 2 0 0 0 0.50573 1 24281 24281 7.609 1.8771 1 138160 33194 11133 21135 21146 38072 38072 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 639.8438720703125 2 639.843676 1277.6728 0.50832 0.00032525 -0.10548 -6.7489E-05 0.40284 0.00025776 639.8436310795774 91.7 0.79927 95.101 94.73 95.53 3.401 577 117 6 0 0 0 0.35213 2 22946 22878;22946 11.495 5.7629 1 13750000 33195 11133 21135 21146 38073;38074 38074 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 639.84423828125 2 639.843676 1277.6728 0.51484 0.00032942 -0.1814 -0.00011607 0.33344 0.00021335 639.8435366119385 98.974 0.64817 102.41 102 102.65 3.4328 382 97 6 0 0 0 0.35213 4 24465 24438;24465;24489;24513 11.495 5.7629 1 4191900 33196 11133 21135 21146 38075;38076;38077;38078 38076 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 639.8438110351562 2 639.843676 1277.6728 0.4381 0.00028032 -0.41773 -0.00026728 0.020374 1.3036E-05 639.8436434823143 91.386 0.9293 95.012 94.605 95.534 3.626 795 130 7 0 0 0 0.35213 2 21988 21988;22017 11.495 3.8858 1 94926000 33197 11133 21135 21146 38079;38080 38079 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 639.8440551757812 2 639.843676 1277.6728 0.43556 0.00027869 -0.27574 -0.00017643 0.15981 0.00010226 639.8436009035877 98.72 0.73749 102.33 101.89 102.63 3.6065 522 102 7 0 0 0 0.35213 6 23774 23745;23774;23804;23835;23865;23899 11.495 5.7629 1 19285000 33198 11133 21135 21146 38081;38082;38083;38084;38085;38086 38082 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 639.84375 2 639.843676 1277.6728 0.49959 0.00031966 -0.3495 -0.00022363 0.15009 9.6037E-05 639.8436236229853 91.326 0.91702 95.081 94.632 95.549 3.7554 786 133 7 0 0 0 0.35213 1 21759 21759 11.495 3.3392 1 96075000 33199 11133 21135 21146 38087 38087 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 639.8438110351562 2 639.843676 1277.6728 0.49962 0.00031968 -0.28411 -0.00018179 0.21551 0.00013789 639.8435629550584 98.391 0.77454 102.16 101.85 102.63 3.7707 533 109 7 0 0 0 0.35213 5 23363 23338;23363;23392;23420;23447 11.495 4.393 1 23431000 33200 11133 21135 21146 38088;38089;38090;38091;38092 38089 0.04506971966475248 QKSRIANSVFE 11 Unmodified _QKSRIANSVFE_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 639.8440551757812 2 639.843676 1277.6728 0.63416 0.00040577 -0.41862 -0.00026785 0.21554 0.00013791 639.8434989313007 98.469 0.78478 102.37 102.04 102.83 3.9022 550 107 7 0 0 0 0.35213 3 23287 23287;23368;23425 11.495 5.7629 1 21208000 33201 11133 21135 21146 38093;38094;38095 38093 0.04506971966475248 QKTEHLLS 8 Unmodified _QKTEHLLS_ 0 0 0 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 MSMS UPN47_class_I_Rep_1 2 478.3372497558594 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 112.01 1 115.58 115.08 116.08 3.572 0 0 0 0.40746 1 27637 27637 0.69038 0 1 33202 2194 21136 21147 38096 38096 0.03436883409153779 QKTKYGVF 8 Unmodified _QKTKYGVF_ 0 0 0 L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|34|3|sense L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|34|3|sense L1PA16_dup8383|chrX:77597343-77598442:+|1.150009474229838|0.0893572367018225|3.69|150.0|34|3|sense MSMS UPN48_class_I_Rep_1 5 485.8319091796875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 40.153 1 43.658 43.158 44.158 3.5048 0 0 0 0.40625 1 7173 7173 2.3027 0 1 33203 14124 21137 21148 38097 38097 0.0423837527713431 QKTYDKTG 8 Unmodified _QKTYDKTG_ 0 0 0 REV__THE1C-int_dup606|chr5:39010409-39012014:+|2.455550946850213|0.1784675068308603|3.78|151.0|87|3|anti-sense REV__THE1C-int_dup606|chr5:39010409-39012014:+|2.455550946850213|0.1784675068308603|3.78|151.0|87|3|anti-sense MSMS UPN46_class_I_Rep_3 1 470.7420349121094 2 470.740357 939.46616 NaN NaN NaN NaN NaN NaN NaN 102.88 1 102.88 102.38 103.38 0 0 0 0 0.40404 1 25103 25103 5.2307 0 1 + 33204 32291 21138 21149 38098 38098 -0.005993958618432771 QKVFLFKG 8 Unmodified _QKVFLFKG_ 0 0 0 nc|ENSG00000123342|Q99542-3|MMP19;ENST00000547685.5_1_12:56230822-56232389:-|nuORF;ENSG00000123342|ENST00000322569|MMP19 nc|ENSG00000123342|Q99542-3|MMP19 nc|ENSG00000123342|Q99542-3|MMP19 MSMS UPN47_class_I_Rep_2 3 483.7926940917969 2 483.792195 965.569838 NaN NaN NaN NaN NaN NaN NaN 116.1 1 119.6 119.1 120.1 3.4965 0 0 0 0.40738 1 28333 28333 0.79363 0 1 33205 2419 21139 21150 38099 38099 0.08567556036484802 QKVMDNIQGQ 10 Unmodified _QKVMDNIQGQ_ 0 0 0 REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF REV__ENST00000505303.5_1_5:110428043-110447004:+|nuORF MSMS UPN47_class_I_Rep_1 2 580.78759765625 2 580.790055 1159.56556 NaN NaN NaN NaN NaN NaN NaN 29.966 1 33.711 33.211 34.211 3.7449 0 0 0 0.53105 1 4834 4834 1.4819 0.15237 1 + 33206 22710 21140 21151 38100 38100 -0.007843212394163857 QKVNNNKL 8 Unmodified _QKVNNNKL_ 0 0 0 L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|15|1|sense L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|15|1|sense L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.27752685546875 2 479.277441 956.540328 0.11705 5.6102E-05 -0.23064 -0.00011054 -0.11359 -5.4441E-05 479.2771831640305 73.243 1.1706 76.629 75.892 77.063 3.3861 121 91 2 0 0 0 0.82752 1 17781 17781 0.69038 0 1 114560 33207 14566 21141 21152 38101 38101 0.06031992020314192 QKVPSCPF 8 Unmodified _QKVPSCPF_ 0 0 0 L1ME1_dup11431|chr6:38125977-38126723:-|1.0928243923756988|0.0299602771657386|5.19|150.0|41|3|anti-sense L1ME1_dup11431|chr6:38125977-38126723:-|1.0928243923756988|0.0299602771657386|5.19|150.0|41|3|anti-sense L1ME1_dup11431|chr6:38125977-38126723:-|1.0928243923756988|0.0299602771657386|5.19|150.0|41|3|anti-sense MSMS UPN48_class_I_Rep_1 5 453.23065185546875 2 453.231113 904.447674 NaN NaN NaN NaN NaN NaN NaN 43.668 1 47.179 46.679 47.679 3.5103 0 0 0 0.40604 1 8222 8222 2.5775 0 1 33208 12181 21142 21153 38102 38102 -0.008372290374040858 QKVRPRRWKLQ 11 Unmodified _QKVRPRRWKLQ_ 0 0 0 ENSG00000237700|ENST00000437300|PRAMEF33;ENSG00000187545|ENST00000235347|PRAMEF10;ENSG00000279804|ENST00000624297|PRAMEF18;ENSG00000204480|ENST00000376101|PRAMEF19;ENSG00000116726|ENST00000357726|PRAMEF12 ENSG00000237700|ENST00000437300|PRAMEF33 ENSG00000237700|ENST00000437300|PRAMEF33 MULTI-MSMS UPN48_class_I_Rep_2 6 498.9763488769531 3 498.975788 1493.90553 0.41168 0.00020542 0.53554 0.00026722 0.94722 0.00047264 498.97599588517267 55.294 0.53595 58.85 58.657 59.193 3.5559 49 30 2 0 0 0 0.68491 1 11785 11785 0.08335 0 1 107220 33209 2197 21143 21154 38103 38103 0.17833698547588028 QKVVALRK 8 Unmodified _QKVVALRK_ 0 0 0 nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;AGAP3|p.N411Rfs*8|1|0.5|ENSG00000133612|chr7:151134412-151134413|-/G|frameshift_variant;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-5|AGAP3 nc|ENSG00000133612|Q96P47-3|AGAP3 nc|ENSG00000133612|Q96P47-3|AGAP3 MSMS UPN47_class_I_Rep_1 2 471.3067626953125 2 471.316369 940.618185 NaN NaN NaN NaN NaN NaN NaN 78.358 1 81.804 81.304 82.304 3.4456 0 0 0 0.40738 1 19479 19479 0.79363 0 1 33210 2 21144 21155 38104 38104 0.14550049676358867 QKWFHVRH 8 Unmodified _QKWFHVRH_ 0 0 0 L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|13|2|sense L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|13|2|sense L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 569.3065795898438 2 569.306867 1136.59918 NaN NaN NaN NaN NaN NaN NaN 73.709 1 73.709 73.209 74.209 0 0 0 0 0.40746 1 17097 17097 0.69038 0 1 33211 9123 21145 21156 38105 38105 0.03634513105316728 QKYAKRFN 8 Unmodified _QKYAKRFN_ 0 0 0 REV__ENSG00000166573|ENST00000299727|GALR1 REV__ENSG00000166573|ENST00000299727|GALR1 MSMS UPN48_class_I_Rep_1 5 527.7929077148438 2 527.793258 1053.57196 NaN NaN NaN NaN NaN NaN NaN 30.875 1 34.417 33.917 34.917 3.542 0 0 0 0.40625 1 4494 4494 2.3027 0.4585 1 + 33212 20182 21146 21157 38106 38106 0.04731984774275588 QKYEDMLSL 9 Unmodified _QKYEDMLSL_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 MULTI-MSMS UPN47_class_I_Rep_1 2 563.7763671875 2 563.776082 1125.53761 0.28004 0.00015788 -0.0052872 -2.9808E-06 0.27475 0.0001549 563.7760449316166 51.523 1.1485 55.116 54.658 55.807 3.5933 198 67 4 0 0 0 0.32682 1 11275 11275 12.241 12.241 1 2472900 33213 727 21147 21158 38107 38107 -0.02013644219505295 QKYISHPVI 9 Unmodified _QKYISHPVI_ 0 0 0 PABL_A-int_dup377|chr19:21086913-21089283:-|1.6634001843570188|0.0444668435413478|5.23|150.0|156|2|anti-sense PABL_A-int_dup377|chr19:21086913-21089283:-|1.6634001843570188|0.0444668435413478|5.23|150.0|156|2|anti-sense PABL_A-int_dup377|chr19:21086913-21089283:-|1.6634001843570188|0.0444668435413478|5.23|150.0|156|2|anti-sense MSMS UPN47_class_I_Rep_2 3 542.8107299804688 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 34.506 1 37.932 37.432 38.432 3.4253 0 0 0 0.37692 1 6250 6250 6.2058 1.4498 1 33214 16881 21148 21159 38108 38108 0.06922022231265146 QKYKGFIVL 9 Unmodified _QKYKGFIVL_ 0 0 0 REV__MER51-int_dup486|chr17:20195760-20197168:-|1.650749121742512|0.0034331309662757|8.91|151.0|5|1|sense REV__MER51-int_dup486|chr17:20195760-20197168:-|1.650749121742512|0.0034331309662757|8.91|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 548.332763671875 2 548.331685 1094.64882 NaN NaN NaN NaN NaN NaN NaN 83.147 1 86.828 86.328 87.328 3.6814 0 0 0 0.40038 1 19754 19754 0.6015 0 1 + 33215 31388 21149 21160 38109 38109 0.10527783270754298 QKYKRIRNQRR 11 Unmodified _QKYKRIRNQRR_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.3143920898438 3 515.97808 1544.91241 0.3236 0.00016697 0.17698 9.132E-05 0.50058 0.00025829 516.3125987091499 106.74 0.24596 106.74 106.57 106.81 0 43 29 2 0 0 0 0.68491 1 26026 26026 0.08335 0 1 300600 + 33216 30337 21150 21161 38110 38110 0.1617501142814035 QKYKRIRNQRR 11 Unmodified _QKYKRIRNQRR_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 516.6470947265625 3 515.97808 1544.91241 0.24835 0.00012814 0.58032 0.00029943 0.82867 0.00042758 515.978215357213 102.97 0.10016 106.59 106.5 106.6 3.6164 18 13 2 0 0 0 22.551 1 24804 24804 0.08335 0 1 212510 + 33217 30337 21150 21161 38111 38111 0.1617501142814035 QKYKRIRNQRR 11 Unmodified _QKYKRIRNQRR_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.9777221679688 3 515.97808 1544.91241 0.34451 0.00017776 0.37875 0.00019543 0.72325 0.00037318 516.312762635817 102.53 0.41893 106.24 105.96 106.38 3.7108 80 60 2 0 0 0 0.68491 1 24309 24309 0.08335 0 1 299120 + 33218 30337 21150 21161 38112 38112 0.1617501142814035 QKYKRIRNQRR 11 Unmodified _QKYKRIRNQRR_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.3135375976562 3 515.97808 1544.91241 0.34475 0.00017788 0.64147 0.00033098 0.98622 0.00050887 515.978277456462 102.49 0.22264 106.26 106.1 106.32 3.776 60 30 3 0 0 0 0.68491 1 24199 24199 0.08335 0 1 333070 + 33219 30337 21150 21161 38113 38113 0.1617501142814035 QKYKRIRNQRR 11 Unmodified _QKYKRIRNQRR_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.9783325195312 3 515.97808 1544.91241 0.34357 0.00017727 0.22705 0.00011715 0.57062 0.00029443 516.3126546697642 102.64 0.27274 106.42 106.31 106.58 3.776 67 36 2 0 0 0 0.68491 1 24267 24267 0.08335 0 1 311420 + 33220 30337 21150 21161 38114 38114 0.1617501142814035 QKYSKRTIKKK 11 Unmodified _QKYSKRTIKKK_ 0 0 0 REV__L1MEf_dup1819|chr2:239969776-239970805:+|1.1736243327572695|0.1947186957939441|2.59|150.0|18|2|sense REV__L1MEf_dup1819|chr2:239969776-239970805:+|1.1736243327572695|0.1947186957939441|2.59|150.0|18|2|sense MSMS UPN46_class_I_Rep_3 1 469.82330322265625 3 469.964666 1406.87217 NaN NaN NaN NaN NaN NaN NaN 70.528 1 70.528 70.028 71.028 0 0 0 0 0.38417 1 16212 16212 0.40827 0.24894 1 + 33221 28614 21151 21162 38115 38115 0.1850065198500488 QLAAFKQFK 9 Unmodified _QLAAFKQFK_ 0 0 0 REV__THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|27|3|sense REV__THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|27|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 540.8143310546875 2 540.813659 1079.61277 0.44122 0.00023862 0.14866 8.0397E-05 0.58988 0.00031901 540.8136828373949 49.391 0.66677 53.02 52.612 53.279 3.6291 54 47 2 0 0 0 0.46869 1 9847 9847 3.9444 1.8846 1 139720 + 33222 32237 21152 21163 38116 38116 0.07614326093880663 QLAARGIC 8 Unmodified _QLAARGIC_ 0 0 0 nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1 nc|ENSG00000106100|Q9Y239-3|NOD1 nc|ENSG00000106100|Q9Y239-3|NOD1 MSMS UPN46_class_I_Rep_3 1 416.22821044921875 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 38.989 1 38.989 38.489 39.489 0 0 0 0 0.40404 1 7464 7464 5.2307 0 1 33223 1774 21153 21164 38117 38117 0.021253065396763304 QLAGRGVM 8 Unmodified _QLAGRGVM_ 0 0 0 REV__ENST00000465124.1_1_9:127635663-127635906:+|nuORF REV__ENST00000465124.1_1_9:127635663-127635906:+|nuORF MSMS UPN46_class_I_Rep_3 1 416.22784423828125 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 38.728 1 38.728 38.228 39.228 0 0 0 0 0.40404 1 7392 7392 5.2307 2.3415 1 + 33224 22464 21154 21165 38118 38118 0.02125306539687699 QLAGRGVM 8 Unmodified _QLAGRGVM_ 0 0 0 REV__ENST00000465124.1_1_9:127635663-127635906:+|nuORF REV__ENST00000465124.1_1_9:127635663-127635906:+|nuORF MSMS UPN46_class_I_Rep_3 1 416.2279968261719 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 38.822 1 38.822 38.322 39.322 0 0 0 0 0.40404 1 7420 7420 5.2307 2.3415 1 + 33225 22464 21154 21165 38119 38119 0.02125306539687699 QLAHEKTLTVF 11 Unmodified _QLAHEKTLTVF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|25|2|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|25|2|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 644.3603515625 2 643.858795 1285.70304 0.68456 0.00044076 0.11721 7.5468E-05 0.80178 0.00051623 643.858385682062 62.79 0.4378 62.79 62.624 63.061 0 55 41 2 0 0 0 0.42924 1 14087 14087 9.544 3.3521 1 232150 33226 11962 21155 21166 38120 38120 0.07161330631629426 QLALFAIAT 9 Unmodified _QLALFAIAT_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MSMS UPN47_class_I_Rep_1 2 474.2823486328125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.73 1 113.33 112.83 113.83 3.6046 0 0 0 0.36505 1 27075 27075 7.2892 0 1 33227 1792 21156 21167 38121 38121 0.07335545936939525 QLALKKILNIT 11 Unmodified _QLALKKILNIT_ 0 0 0 L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense L1MB3_dup5730|chr6:34621872-34623251:+|1.451375232171082|0.0170004866449641|6.42|151.0|26|2|sense MSMS UPN48_class_I_Rep_1 5 627.9082641601562 2 627.91083 1253.80711 NaN NaN NaN NaN NaN NaN NaN 57.878 1 61.372 60.872 61.872 3.4942 0 0 0 0.38417 1 12578 12578 1.0715 0 1 33228 10434 21157 21168 38122 38122 0.19035657459176036 QLAPMAVYA 9 Unmodified _QLAPMAVYA_ 0 0 0 L1ME3G_dup748|chr1:167658731-167659280:-|2.793727753998932|0.0237328492739165|6.88|151.0|33|2|anti-sense L1ME3G_dup748|chr1:167658731-167659280:-|2.793727753998932|0.0237328492739165|6.88|151.0|33|2|anti-sense L1ME3G_dup748|chr1:167658731-167659280:-|2.793727753998932|0.0237328492739165|6.88|151.0|33|2|anti-sense MSMS UPN47_class_I_Rep_1 2 482.2513122558594 2 482.252046 962.489538 NaN NaN NaN NaN NaN NaN NaN 70.45 1 73.822 73.322 74.322 3.3713 0 0 0 0.381 1 17122 17122 5.2307 0 1 33229 12848 21158 21169 38123 38123 0.006793266511067486 QLARRQVMLQ 10 Unmodified _QLARRQVMLQ_ 0 0 0 ENST00000581549.1_1_17:70599690-70599849:-|nuORF ENST00000581549.1_1_17:70599690-70599849:-|nuORF ENST00000581549.1_1_17:70599690-70599849:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 414.9084777832031 3 414.908163 1241.70266 0.096979 4.0237E-05 0.0016828 6.982E-07 0.098662 4.0936E-05 414.9080637280706 29.804 0.97511 33.436 32.709 33.685 3.6316 168 112 2 0 0 0 0.84575 1 4190 4190 1.7423 1.7423 1 113000 33230 7561 21159 21170 38124 38124 0.09147632430835984 QLARRQVMLQ 10 Unmodified _QLARRQVMLQ_ 0 0 0 ENST00000581549.1_1_17:70599690-70599849:-|nuORF ENST00000581549.1_1_17:70599690-70599849:-|nuORF ENST00000581549.1_1_17:70599690-70599849:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 414.908163 1241.70266 -0.0062995 -2.6137E-06 0.25949 0.00010766 0.25319 0.00010505 414.908106850244 29.419 0.83897 33.148 32.869 33.708 3.7286 -0.14411 0.00021193 NaN 1.7423 135 97 2 NaN NaN NaN NaN 0 NaN NaN 0 166560 33231 7561 21159 21170 0.09147632430835984 QLASKLSFRNK 11 Unmodified _QLASKLSFRNK_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MULTI-MSMS UPN48_class_I_Rep_1 5 646.3778076171875 2 646.377686 1290.74082 0.43786 0.00028302 -0.21719 -0.00014039 0.22067 0.00014264 646.3777788150404 93.831 1.6034 97.452 96.621 98.225 3.6208 270 194 2 0 0 0 0.52578 1 22633 22633 7.1017 1.8048 1 411860 33232 4764 21160 21171 38125 38125 0.10707841617136182 QLASKLSFRNK 11 Unmodified _QLASKLSFRNK_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MULTI-MSMS UPN48_class_I_Rep_2 6 646.3770751953125 2 646.377686 1290.74082 0.50126 0.000324 -0.45375 -0.00029329 0.047508 3.0708E-05 646.3775254368348 94.337 0.41637 98.114 97.896 98.313 3.7761 126 56 3 0 0 0 0.52578 1 22393 22393 7.1017 0.90987 1 244920 33233 4764 21160 21171 38126 38126 0.10707841617136182 QLASKLSFRNK 11 Unmodified _QLASKLSFRNK_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 646.377686 1290.74082 0.43803 0.00028313 -0.69102 -0.00044666 -0.25299 -0.00016353 646.3772899523522 94.758 0.31998 98.374 98.221 98.541 3.6167 0.14822 -0.00020134 NaN 7.1017 70 40 3 NaN NaN NaN NaN 0 NaN NaN 0 261820 33234 4764 21160 21171 0.10707841617136182 QLASKLSFRNK 11 Unmodified _QLASKLSFRNK_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 646.377686 1290.74082 0.65204 0.00042146 -0.29743 -0.00019225 0.35461 0.00022921 646.3777323678354 94.289 0.34011 98.19 98.003 98.343 3.9016 -0.035727 0.00030748 NaN 7.1017 71 48 2 NaN NaN NaN NaN 0 NaN NaN 0 258480 33235 4764 21160 21171 0.10707841617136182 QLASKLSFRNK 11 Unmodified _QLASKLSFRNK_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 646.377686 1290.74082 0.65455 0.00042309 -0.23937 -0.00015472 0.41518 0.00026836 646.377876855883 93.334 0.15015 97.225 97.162 97.312 3.8914 -0.11235 -1.7592E-05 NaN 7.1017 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 161090 33236 4764 21160 21171 0.10707841617136182 QLASKNEHK 9 Unmodified _QLASKNEHK_ 0 0 0 REV__nc|ENSG00000215252|A8MQT2-2|GOLGA8B REV__nc|ENSG00000215252|A8MQT2-2|GOLGA8B MSMS UPN47_class_I_Rep_2 3 527.78662109375 2 527.78563 1053.55671 NaN NaN NaN NaN NaN NaN NaN 25.191 1 28.674 28.174 29.174 3.483 0 0 0 0.38639 1 3462 3462 3.9444 0.66309 1 + 33237 20549 21161 21172 38127 38127 0.03207073186422349 QLAVDVLVVP 10 Unmodified _QLAVDVLVVP_ 0 0 0 REV__ENST00000391858.8_1_1:231473224-231473434:+|nuORF REV__ENST00000391858.8_1_1:231473224-231473434:+|nuORF MSMS UPN47_class_I_Rep_2 3 526.8218383789062 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 118.06 1 121.54 121.04 122.04 3.4822 0 0 0 0.53105 1 28874 28874 1.4819 0 1 + 33238 22086 21162 21173 38128 38128 0.10399773171252491 QLCLLFLFPW 10 Unmodified _QLCLLFLFPW_ 0 0 0 REV__ENST00000484848.5_1_10:102266147-102268388:-|nuORF REV__ENST00000484848.5_1_10:102266147-102268388:-|nuORF MSMS UPN47_class_I_Rep_1 2 640.3488159179688 2 640.34902 1278.68349 NaN NaN NaN NaN NaN NaN NaN 61.709 1 65.077 64.577 65.577 3.3681 0 0 0 0.53105 1 14487 14487 1.6526 0 1 + 33239 22595 21163 21174 38129 38129 0.05529283087184922 QLDEETQY 8 Unmodified _QLDEETQY_ 0 0 0 nc|ENSG00000134758|Q8WVD3-2|RNF138;ENSG00000134758|ENST00000261593|RNF138 nc|ENSG00000134758|Q8WVD3-2|RNF138 nc|ENSG00000134758|Q8WVD3-2|RNF138 MULTI-MSMS UPN48_class_I_Rep_3 7 513.22509765625 2 513.224736 1024.43492 0.37518 0.00019255 0.4103 0.00021057 0.78547 0.00040312 513.2249847354733 69.787 0.89893 73.3 72.897 73.796 3.5129 135 72 3 0 0 0 0.82752 2 16013 16013;16204 18.135 0 1 270180 33240 2864 21164 21175 38130;38131 38130 -0.07632013686588834 QLDLAEIYR 9 Unmodified _QLDLAEIYR_ 0 0 0 L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense MSMS UPN47_class_I_Rep_1 2 560.8048706054688 2 560.803488 1119.59242 NaN NaN NaN NaN NaN NaN NaN 57.596 1 61.033 60.533 61.533 3.437 0 0 0 0.34878 1 13235 13235 8.1555 0 1 33241 10653 21165 21176 38132 38132 0.03741110643431966 QLDLAEIYR 9 Unmodified _QLDLAEIYR_ 0 0 0 L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense MSMS UPN47_class_I_Rep_1 2 560.7428588867188 2 560.803488 1119.59242 NaN NaN NaN NaN NaN NaN NaN 57.66 1 61.097 60.597 61.597 3.437 0 0 0 0.34878 1 13255 13255 8.1555 2.4237 1 33242 10653 21165 21176 38133 38133 0.03741110643431966 QLDLAEIYR 9 Unmodified _QLDLAEIYR_ 0 0 0 L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense L1MB5_dup8395|chr17:83042357-83044662:+|2.8102038620140384|0.0387364590013719|6.18|151.0|74|3|sense MSMS UPN47_class_I_Rep_3 4 560.803466796875 2 560.803488 1119.59242 NaN NaN NaN NaN NaN NaN NaN 57.94 1 61.108 60.608 61.608 3.1681 0 0 0 0.37891 1 13425 13425 5.7319 0 1 33243 10653 21165 21176 38134 38134 0.03741110643431966 QLDLTSVWA 9 Unmodified _QLDLTSVWA_ 0 0 0 REV__ENST00000582293.1_1_17:56440599-56440737:-|nuORF REV__ENST00000582293.1_1_17:56440599-56440737:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.7730102539062 2 516.771657 1031.52876 NaN NaN NaN NaN NaN NaN NaN 77.373 1 80.704 80.204 81.204 3.3315 0 0 0 0.38478 1 19189 19189 4.3292 0.38484 1 + 33244 23130 21166 21177 38135 38135 0.014257502063401262 QLDRISVYY 9 Unmodified _QLDRISVYY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_1 2 578.8035278320312 2 578.803488 1155.59242 0.28985 0.00016777 -0.21223 -0.00012284 0.077622 4.4928E-05 578.8035813315875 52.545 3.7447 56.104 55.592 59.337 3.5585 674 242 5 0 0 0 7.7747E-05 19 11652 11579;11615;11652;11691;11733;11778;11821;11867;11902;11906;11949;11989;12028;12066;12110;12152;12203;12246;12357 165.72 107.04 1 23267000 33245 5291 21167 21178 38136;38137;38138;38139;38140;38141;38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152;38153;38154 38138 0.02085110643452026 QLDRISVYY 9 Unmodified _QLDRISVYY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_2 3 578.8034057617188 2 578.803488 1155.59242 0.51642 0.0002989 -0.3605 -0.00020866 0.15592 9.0246E-05 578.8035473770982 52.795 3.0567 56.122 55.611 58.667 3.3266 650 200 5 0 0 0 3.8699E-05 16 11724 11690;11724;11764;11803;11844;11887;11931;11967;12008;12048;12172;12216;12257;12298;12350;12401 168.54 107.18 1 21678000 33246 5291 21167 21178 38155;38156;38157;38158;38159;38160;38161;38162;38163;38164;38165;38166;38167;38168;38169;38170 38156 0.02085110643452026 QLDRISVYY 9 Unmodified _QLDRISVYY_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN47_class_I_Rep_3 4 578.8037719726562 2 578.803488 1155.59242 0.49322 0.00028548 -0.26475 -0.00015324 0.22847 0.00013224 578.8036312860327 53.029 4.2768 56.224 55.693 59.969 3.1948 737 278 5 0 0 0 7.7747E-05 16 11995 11799;11832;11871;11912;11953;11995;12043;12083;12121;12198;12245;12286;12324;12374;12415;12461 168.54 107.18 1 20045000 33247 5291 21167 21178 38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181;38182;38183;38184;38185;38186 38176 0.02085110643452026 QLDTRVSEFY 10 Unmodified _QLDTRVSEFY_ 0 0 0 nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL nc|ENSG00000292339|O95671-3|ASMTL nc|ENSG00000292339|O95671-3|ASMTL MULTI-MSMS UPN47_class_I_Rep_1 2 629.8103637695312 2 629.309135 1256.60372 0.34939 0.00021988 -0.24336 -0.00015315 0.10604 6.673E-05 629.3090556889832 52.088 0.32899 55.647 55.368 55.697 3.5585 35 24 2 0 0 0 0.56118 1 11536 11536 2.9952 0.93549 1 118880 33248 4404 21168 21179 38187 38187 -0.014321120530894405 QLEDGRTLSDY 11 Unmodified _QLEDGRTLSDY_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 648.8065795898438 2 648.806956 1295.59936 0.044767 2.9045E-05 0.015521 1.007E-05 0.060288 3.9116E-05 648.8068915671265 40.234 0.62372 43.606 43.336 43.959 3.3712 71 40 2 0 0 0 0.32383 1 8005 8005 29.437 11.291 1 165550 33249 3335 21169 21180 38188 38188 -0.03661621266655857 QLEDGRTLSDY 11 Unmodified _QLEDGRTLSDY_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 649.3081665039062 2 648.806956 1295.59936 -0.013585 -8.8138E-06 0.030806 1.9987E-05 0.017221 1.1173E-05 648.8069804482541 40.347 0.61457 43.585 43.307 43.922 3.2372 79 38 3 0 0 0 0.29054 1 8030 8030 16.566 8.4104 1 147020 33250 3335 21169 21180 38189 38189 -0.03661621266655857 QLEDGRTLSDY 11 Unmodified _QLEDGRTLSDY_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 648.806956 1295.59936 0.054841 3.5581E-05 -0.056922 -3.6932E-05 -0.0020812 -1.3503E-06 648.8068810664465 39.838 0.65936 43.504 43.307 43.967 3.6668 -0.060497 -6.1699E-05 NaN 16.566 93 47 3 NaN NaN NaN NaN 0 NaN NaN 0 162650 33251 3335 21169 21180 -0.03661621266655857 QLEFYWYI 8 Unmodified _QLEFYWYI_ 0 0 0 L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|125|1|anti-sense L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|125|1|anti-sense L1P4_dup2722|chr12:46743145-46746297:+|2.6599728524974044|0.0390822568485602|6.09|151.0|125|1|anti-sense MSMS UPN47_class_I_Rep_2 3 581.2845458984375 2 581.2844 1160.55425 NaN NaN NaN NaN NaN NaN NaN 21.755 1 25.179 24.679 25.679 3.4241 0 0 0 0.40738 1 2478 2478 0.79363 0 1 33252 13554 21170 21181 38190 38190 -0.019607752712545334 QLERINVYY 9 Unmodified _QLERINVYY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000445286.3_1_12:38595738-38596634:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B MULTI-MSMS UPN47_class_I_Rep_1 2 599.3167724609375 2 599.316763 1196.61897 0.27827 0.00016677 0.074012 4.4357E-05 0.35229 0.00021113 599.3167398975141 50.89 0.99706 54.519 54.051 55.048 3.6285 130 45 4 0 0 0 0.0054033 5 11224 11139;11180;11224;11270;11317 88.954 36.686 1 760060 33253 5222;5787;6661 21171 21182 38191;38192;38193;38194;38195 38193 0.028527995347758406 QLERINVYY 9 Unmodified _QLERINVYY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000445286.3_1_12:38595738-38596634:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B MULTI-MSMS UPN47_class_I_Rep_2 3 599.3167724609375 2 599.316763 1196.61897 0.48957 0.00029341 -0.12399 -7.4307E-05 0.36558 0.0002191 599.3165582353554 51.086 1.1088 54.425 54.089 55.198 3.3386 147 57 3 0 0 0 0.0060693 5 11256 11211;11256;11304;11344;11393 99.799 47.531 1 751500 33254 5222;5787;6661 21171 21182 38196;38197;38198;38199;38200 38197 0.028527995347758406 QLERINVYY 9 Unmodified _QLERINVYY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000445286.3_1_12:38595738-38596634:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B MULTI-MSMS UPN47_class_I_Rep_3 4 599.3167114257812 2 599.316763 1196.61897 0.54607 0.00032727 -0.19822 -0.00011879 0.34785 0.00020847 599.3165259743012 51.234 1.1318 54.45 54.153 55.284 3.2163 143 57 4 0 0 0 0.0054033 7 11352 11311;11352;11396;11439;11481;11524;11581 88.954 36.686 1 705430 33255 5222;5787;6661 21171 21182 38201;38202;38203;38204;38205;38206;38207 38202 0.028527995347758406 QLERINVYY 9 Unmodified _QLERINVYY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000404155.1_1_6:3177457-3179994:-|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000445286.3_1_12:38595738-38596634:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000261456|ENST00000568584|TUBB8;ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B MULTI-MATCH UPN47_class_I_Rep_3 4 2 599.316763 1196.61897 0.53609 0.00032129 0.73929 0.00044307 1.2754 0.00076435 599.3179768761269 50.937 0.068504 54.153 54.112 54.18 3.2163 -0.2123 0.00092813 NaN 88.954 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 44635 33256 5222;5787;6661 21171 21182 0.028527995347758406 QLFGRVIK 8 Unmodified _QLFGRVIK_ 0 0 0 ENST00000436372.1_1_X:70535119-70535567:-|nuORF;ENSG00000139168|ENST00000266529|ZCRB1 ENST00000436372.1_1_X:70535119-70535567:-|nuORF ENST00000436372.1_1_X:70535119-70535567:-|nuORF MSMS UPN46_class_I_Rep_3 1 480.8028564453125 2 480.803094 959.591636 NaN NaN NaN NaN NaN NaN NaN 90.955 1 90.955 90.455 91.455 0 0 0 0 0.40746 1 21947 21947 0.69038 0 1 33257 3128 21172 21183 38208 38208 0.11022360785023011 QLFHFFFF 8 Unmodified _QLFHFFFF_ 0 0 0 REV__L1MB7_dup414|chr1:41149090-41150220:-|1.230337939140386|0.0943679504920703|3.7|151.0|84|3|anti-sense REV__L1MB7_dup414|chr1:41149090-41150220:-|1.230337939140386|0.0943679504920703|3.7|151.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 566.7840576171875 2 566.78437 1131.55419 NaN NaN NaN NaN NaN NaN NaN 25.298 1 25.298 24.798 25.798 0 0 0 0 0.40746 1 3449 3449 0.69038 0 1 + 33258 26261 21173 21184 38209 38209 -0.00632730480583632 QLFIFLAL 8 Unmodified _QLFIFLAL_ 0 0 0 ENSG00000124657|ENST00000244623|OR2B6;ENSG00000168131|ENST00000303324|OR2B2 ENSG00000124657|ENST00000244623|OR2B6 ENSG00000124657|ENST00000244623|OR2B6 MULTI-MSMS UPN46_class_I_Rep_3 1 482.795654296875 2 482.796946 963.57934 -0.043757 -2.1126E-05 -2.535 -0.0012239 -2.5787 -0.001245 482.79562744110075 27.398 0.085379 27.398 27.378 27.463 0 8 4 2 0 0 0 0.82752 1 4073 4073 2.8892 0 1 74243 33259 2479 21174 21185 38210 38210 0.09609324321968415 QLFNSKQI 8 Unmodified _QLFNSKQI_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS UPN48_class_I_Rep_2 6 489.27337646484375 2 489.274367 976.53418 0.15979 7.8179E-05 -0.37379 -0.00018288 -0.214 -0.0001047 489.2739876342192 47.639 0.22836 51.375 51.329 51.557 3.7361 21 15 2 0 0 0 0.82752 1 9455 9455 10.824 0 1 125090 + 33260 20583 21175 21186 38211 38211 0.04497473788796924 QLFRLYST 8 Unmodified _QLFRLYST_ 0 0 0 ENST00000343776.9_1_1:227843645-227843831:+|nuORF ENST00000343776.9_1_1:227843645-227843831:+|nuORF ENST00000343776.9_1_1:227843645-227843831:+|nuORF MSMS UPN46_class_I_Rep_3 1 514.282470703125 2 514.282192 1026.54983 NaN NaN NaN NaN NaN NaN NaN 34.852 1 34.852 34.352 35.352 0 0 0 0 0.40472 1 6274 6274 4.3292 0 1 33261 6247 21176 21187 38212 38212 0.03761760305860662 QLFYGLVSF 9 Unmodified _QLFYGLVSF_ 0 0 0 REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|108|3|anti-sense REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|108|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 537.8316650390625 2 537.286943 1072.55933 0.4396 0.00023619 -0.066196 -3.5566E-05 0.3734 0.00020062 537.2867821746784 66.243 0.81339 69.694 69.277 70.09 3.4516 106 54 3 0 0 0 0.1154 1 15252 15252 13.042 0.80181 1 231290 + 33262 28721 21177 21188 38213 38213 0.0259552859138239 QLFYGLVSF 9 Unmodified _QLFYGLVSF_ 0 0 0 REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|108|3|anti-sense REV__L1MEg_dup12552|chr16:10461845-10463292:-|3.2652054714740046|0.3393836525769707|3.27|150.0|108|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 537.286943 1072.55933 0.48458 0.00026036 -0.019781 -1.0628E-05 0.4648 0.00024973 537.2865968166874 65.98 0.37891 69.467 69.147 69.526 3.4866 -0.11371 3.6782E-05 NaN 13.042 73 24 4 NaN NaN NaN NaN 0 NaN NaN 0 332770 + 33263 28721 21177 21188 0.0259552859138239 QLGALPPW 8 Unmodified _QLGALPPW_ 0 0 0 ENST00000368015.1_1_1:161023169-161039631:-|nuORF;ENST00000471492.2_1_1:161024485-161039631:-|nuORF ENST00000368015.1_1_1:161023169-161039631:-|nuORF ENST00000368015.1_1_1:161023169-161039631:-|nuORF MSMS UPN46_class_I_Rep_3 1 441.2575378417969 2 441.247621 880.480688 NaN NaN NaN NaN NaN NaN NaN 29.931 1 29.931 29.431 30.431 0 0 0 0 0.40604 1 4805 4805 2.5775 0 1 33264 6360 21178 21189 38214 38214 0.03566721076947488 QLGGPFIVEN 10 Unmodified _QLGGPFIVEN_ 0 0 0 REV__L1PB1_dup10548|chr13:49050020-49053171:-|2.086697423167162|0.0347861792639434|5.91|151.0|163|2|anti-sense REV__L1PB1_dup10548|chr13:49050020-49053171:-|2.086697423167162|0.0347861792639434|5.91|151.0|163|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 536.7982177734375 2 537.284931 1072.55531 0.44026 0.00023654 1.6314 0.00087653 2.0717 0.0011131 537.2857628565683 59.92 0.17988 63.193 63.077 63.257 3.2731 12 9 2 0 0 0 0.84575 1 13965 13965 30.637 5.2372 1 51587 + 33265 30297 21179 21190 38215 38215 0.021934390976639406 QLGIEKLLDP 10 Unmodified _QLGIEKLLDP_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MSMS UPN48_class_I_Rep_1 5 563.3292846679688 2 563.329339 1124.64412 NaN NaN NaN NaN NaN NaN NaN 56.998 1 60.492 59.992 60.992 3.4942 0 0 0 0.53105 1 12313 12313 2.4985 0.65425 1 33266 5493 21180 21191 38216 38216 0.08678854337335906 QLGLVKPPQD 10 Unmodified _QLGLVKPPQD_ 0 0 0 REV__FLAM_C_dup5763|chr4:82365061-82365180:-|2.380975176253567|0.4502608865152233|2.4|151.0|11|3|anti-sense REV__FLAM_C_dup5763|chr4:82365061-82365180:-|2.380975176253567|0.4502608865152233|2.4|151.0|11|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.7371826171875 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 19.911 1 23.533 23.033 24.033 3.6215 0 0 0 0.53105 1 1594 1594 1.3295 0.13619 1 + 33267 23320 21181 21192 38217 38217 0.07009701023071102 QLGPRVTI 8 Unmodified _QLGPRVTI_ 0 0 0 ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP MSMS UPN48_class_I_Rep_2 6 442.269775390625 2 442.271627 882.528701 NaN NaN NaN NaN NaN NaN NaN 60.528 1 64.007 63.507 64.507 3.4785 0 0 0 0.40643 1 13374 13374 2.0598 0 1 33268 5631 21182 21193 38218 38218 0.08273794997001005 QLGWVGPSLY 10 Unmodified _QLGWVGPSLY_ 0 0 0 REV__AluJr_dup77627|chr19:16090133-16090416:-|1.3598297911510646|0.2284364003354822|2.57|150.0|7|2|sense REV__AluJr_dup77627|chr19:16090133-16090416:-|1.3598297911510646|0.2284364003354822|2.57|150.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 560.293701171875 2 560.295299 1118.57605 NaN NaN NaN NaN NaN NaN NaN 73.127 1 73.127 72.627 73.627 0 0 0 0 0.53105 1 16939 16939 3.2813 0.39209 1 + 33269 17061 21183 21194 38219 38219 0.02150029477343196 QLHFVNRH 8 Unmodified _QLHFVNRH_ 0 0 0 REV__ENST00000462052.1_1_7:6513727-6523688:-|nuORF REV__ENST00000462052.1_1_7:6513727-6523688:-|nuORF MSMS UPN46_class_I_Rep_3 1 525.783447265625 2 525.783225 1049.5519 NaN NaN NaN NaN NaN NaN NaN 31.557 1 31.557 31.057 32.057 0 0 0 0 0.4044 1 5288 5288 4.756 1.1595 1 + 33270 22439 21184 21195 38220 38220 0.02910233834313658 QLHHKAHP 8 Unmodified _QLHHKAHP_ 0 0 0 L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|76|3|sense L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|76|3|sense L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|76|3|sense MSMS UPN48_class_I_Rep_3 7 484.26275634765625 2 484.264668 966.514782 NaN NaN NaN NaN NaN NaN NaN 39.924 1 43.575 43.075 44.075 3.6509 0 0 0 0.4044 1 7037 7037 4.756 0 1 33271 13942 21185 21196 38221 38221 0.0301856228854831 QLHIVLDL 8 Unmodified _QLHIVLDL_ 0 0 0 REV__MLT1F2_dup4928|chr15:72483162-72483539:-|1.6006487109095573|0.0172944383920162|6.53|151.0|5|2|sense REV__MLT1F2_dup4928|chr15:72483162-72483539:-|1.6006487109095573|0.0172944383920162|6.53|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 475.7872009277344 2 475.78711 949.559667 0.17671 8.4076E-05 -0.1571 -7.4747E-05 0.019607 9.3288E-06 475.78698752098813 79.408 0.48883 82.763 82.414 82.903 3.3554 63 45 2 0 0 0 0.82752 1 19724 19724 4.3292 0 1 149260 + 33272 31720 21186 21197 38222 38222 0.08286948311229025 QLHRWVPP 8 Unmodified _QLHRWVPP_ 0 0 0 L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|301|3|anti-sense L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|301|3|anti-sense L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|301|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.7924194335938 2 516.790518 1031.56648 NaN NaN NaN NaN NaN NaN NaN 40.33 1 43.835 43.335 44.335 3.5048 0 0 0 0.40738 1 7226 7226 0.79363 0.10326 1 33273 14921 21187 21198 38223 38223 0.051963059824629454 QLIARGVLI 9 Unmodified _QLIARGVLI_ 0 0 0 L1MC4a_dup7543|chr13:28064591-28065359:+|1.5373109046094893|0.0014322961415384|10.07|151.0|40|1|anti-sense L1MC4a_dup7543|chr13:28064591-28065359:+|1.5373109046094893|0.0014322961415384|10.07|151.0|40|1|anti-sense L1MC4a_dup7543|chr13:28064591-28065359:+|1.5373109046094893|0.0014322961415384|10.07|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_1 2 491.8243408203125 2 491.824027 981.633501 NaN NaN NaN NaN NaN NaN NaN 65.266 1 68.622 68.122 69.122 3.3557 0 0 0 0.38639 1 15556 15556 3.9444 0 1 33274 11610 21188 21199 38224 38224 0.1419491647357063 QLIDLQQV 8 Unmodified _QLIDLQQV_ 0 0 0 REV__ENST00000394635.7_2_4:110678924-110681470:-|nuORF REV__ENST00000394635.7_2_4:110678924-110681470:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.7743225097656 2 478.7742 955.533846 0.098866 4.7334E-05 -0.12222 -5.8517E-05 -0.023356 -1.1182E-05 478.7740777448816 70.397 0.54652 73.768 73.46 74.007 3.3713 82 54 2 0 0 0 0.82752 1 17117 17117 24.021 1.2843 1 109890 + 33275 22105 21189 21200 38225 38225 0.0543005406894963 QLIDLQQV 8 Unmodified _QLIDLQQV_ 0 0 0 REV__ENST00000394635.7_2_4:110678924-110681470:-|nuORF REV__ENST00000394635.7_2_4:110678924-110681470:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 478.77386474609375 2 478.7742 955.533846 0.12766 6.1118E-05 -0.31819 -0.00015234 -0.19053 -9.1221E-05 478.77401598645537 70.635 0.48443 73.918 73.669 74.154 3.2828 62 46 2 0 0 0 0.82752 2 17227 17227;17269 18.146 1.0335 1 120200 + 33276 22105 21189 21200 38226;38227 38226 0.0543005406894963 QLIDLQQV 8 Unmodified _QLIDLQQV_ 0 0 0 REV__ENST00000394635.7_2_4:110678924-110681470:-|nuORF REV__ENST00000394635.7_2_4:110678924-110681470:-|nuORF MSMS UPN47_class_I_Rep_2 3 478.77435302734375 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 70.362 1 73.645 73.145 74.145 3.2828 0 0 0 0.40292 1 17140 17140 6.7232 0 1 + 33277 22105 21189 21200 38228 38228 0.0543005406894963 QLIKIDEFY 9 Unmodified _QLIKIDEFY_ 0 0 0 REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B MULTI-MSMS UPN47_class_I_Rep_1 2 584.8164672851562 2 584.816064 1167.61758 0.34725 0.00020308 -0.049952 -2.9213E-05 0.2973 0.00017387 584.8159826074906 68.991 0.52534 72.359 72.026 72.552 3.3678 50 38 2 0 0 0 0.23293 2 16635 16635;16715 18.146 0 1 125130 + 33278 20716 21190 21201 38229;38230 38229 0.04047165445990686 QLIKIDEFY 9 Unmodified _QLIKIDEFY_ 0 0 0 REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B MSMS UPN47_class_I_Rep_1 2 584.8156127929688 2 584.816064 1167.61758 NaN NaN NaN NaN NaN NaN NaN 69.358 1 72.726 72.226 73.226 3.3678 0 0 0 0.38073 1 16800 16800 5.2969 2.0156 1 + 33279 20716 21190 21201 38231 38231 0.04047165445990686 QLIKIDEFY 9 Unmodified _QLIKIDEFY_ 0 0 0 REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B MULTI-MSMS UPN47_class_I_Rep_2 3 584.8160400390625 2 584.816064 1167.61758 0.40059 0.00023427 -0.18754 -0.00010968 0.21305 0.00012459 584.8159297434156 69.274 0.7614 72.55 72.205 72.966 3.2761 80 61 2 0 0 0 0.23293 1 16842 16842 18.146 0 1 110440 + 33280 20716 21190 21201 38232 38232 0.04047165445990686 QLIKIFHSLG 10 Unmodified _QLIKIFHSLG_ 0 0 0 ENSG00000185666|ENST00000358763|SYN3 ENSG00000185666|ENST00000358763|SYN3 ENSG00000185666|ENST00000358763|SYN3 MSMS UPN46_class_I_Rep_3 1 578.3475341796875 2 578.347866 1154.68118 NaN NaN NaN NaN NaN NaN NaN 110.1 1 110.1 109.6 110.6 0 0 0 0 0.53105 1 27100 27100 1.4819 0 1 33281 5114 21191 21202 38233 38233 0.11002570673736045 QLINLKSKAL 10 Unmodified _QLINLKSKAL_ 0 0 0 REV__nc|ENSG00000100124|Q6NXT1-2|ANKRD54 REV__nc|ENSG00000100124|Q6NXT1-2|ANKRD54 MSMS UPN47_class_I_Rep_2 3 564.3585205078125 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 90.696 1 94.157 93.657 94.657 3.4613 0 0 0 0.53105 1 22487 22487 0.35063 0 1 + 33282 18090 21192 21203 38234 38234 0.14910839845219925 QLISRKHKNRR 11 Unmodified _QLISRKHKNRR_ 0 0 0 REV__L1MA8_dup2997|chr5:65995183-65997412:-|1.7097044475190304|0.0324953968235102|5.72|151.0|48|2|sense REV__L1MA8_dup2997|chr5:65995183-65997412:-|1.7097044475190304|0.0324953968235102|5.72|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 479.29547119140625 3 479.295409 1434.8644 NaN NaN NaN NaN NaN NaN NaN 16.894 1 20.28 19.78 20.78 3.3864 0 0 0 0.38417 1 1162 1162 0.094841 0 1 + 33283 25553 21193 21204 38235 38235 0.16435937508094867 QLISTANH 8 Unmodified _QLISTANH_ 0 0 0 REV__ENSG00000125999|ENST00000253354|BPIFB1 REV__ENSG00000125999|ENST00000253354|BPIFB1 MSMS UPN48_class_I_Rep_1 5 441.76910400390625 2 442.235242 882.45593 NaN NaN NaN NaN NaN NaN NaN 60.906 1 64.38 63.88 64.88 3.4737 0 0 0 0.40604 1 13511 13511 2.5775 0 1 + 33284 18852 21194 21205 38236 38236 0.01000041203553792 QLITNPDF 8 Unmodified _QLITNPDF_ 0 0 0 REV__ENSG00000137877|ENST00000320955|SPTBN5 REV__ENSG00000137877|ENST00000320955|SPTBN5 MSMS UPN46_class_I_Rep_3 1 474.28228759765625 2 474.245275 946.475997 NaN NaN NaN NaN NaN NaN NaN 32.948 1 32.948 32.448 33.448 0 0 0 0 0.40157 1 5703 5703 7.2892 0 1 + 33285 19252 21195 21206 38237 38237 0.0006179214352641793 QLKAFPKH 8 Unmodified _QLKAFPKH_ 0 0 0 nc|ENSG00000040933|Q96PE3-2|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A nc|ENSG00000040933|Q96PE3-2|INPP4A nc|ENSG00000040933|Q96PE3-2|INPP4A MSMS UPN47_class_I_Rep_1 2 484.7882080078125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.073 1 45.752 45.252 46.252 3.6792 0 0 0 0.40625 1 8515 8515 2.3027 0.4585 1 33286 867 21196 21207 38238 38238 0.07525787750932977 QLKEDAVSA 9 Unmodified _QLKEDAVSA_ 0 0 0 CON__Q05443 CON__Q05443 CON__Q05443 MULTI-MSMS UPN47_class_I_Rep_1 2 480.7532958984375 2 480.753464 959.492375 -0.2824 -0.00013577 -0.22499 -0.00010816 -0.5074 -0.00024393 480.7534388644928 39.992 0.6947 43.658 43.35 44.044 3.6668 113 49 3 0 0 0 0.32682 1 7951 7951 12.241 1.4411 1 240820 + 33287 642 21197 21208 38239 38239 0.011008733096105061 QLKEQFYVN 9 Unmodified _QLKEQFYVN_ 0 0 0 REV__L1M4a1_dup624|chr3:136431569-136432494:-|1.6630873816746152|0.0170129638142024|6.61|151.0|1|1|sense REV__L1M4a1_dup624|chr3:136431569-136432494:-|1.6630873816746152|0.0170129638142024|6.61|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 584.8031616210938 2 584.803488 1167.59242 NaN NaN NaN NaN NaN NaN NaN 70.582 1 70.582 70.082 71.082 0 0 0 0 0.39518 1 16227 16227 1.8442 0 1 + 33288 24496 21198 21209 38240 38240 0.01533110643413238 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MULTI-MSMS UPN47_class_I_Rep_1 2 481.7931213378906 2 481.792727 961.5709 -0.2964 -0.0001428 0.59873 0.00028847 0.30233 0.00014566 481.7930232664657 35.647 0.40839 39.323 39.117 39.525 3.6762 37 28 2 0 0 0 0.82752 2 6541 6541;6590 4.756 0.81161 1 69871 + 33289 21352 21199 21210 38241;38242 38241 0.08857770405370502 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MSMS UPN47_class_I_Rep_2 3 481.7929382324219 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 35.985 1 39.396 38.896 39.896 3.4114 0 0 0 0.4044 1 6698 6698 4.756 0.81161 1 + 33290 21352 21199 21210 38243 38243 0.08857770405370502 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MSMS UPN47_class_I_Rep_2 3 481.7646789550781 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 36.147 1 39.558 39.058 40.058 3.4114 0 0 0 0.4044 1 6747 6747 4.756 0.81161 1 + 33291 21352 21199 21210 38244 38244 0.08857770405370502 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MSMS UPN47_class_I_Rep_2 3 481.79248046875 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 36.232 1 39.644 39.144 40.144 3.4114 0 0 0 0.4044 1 6773 6773 4.756 0.81161 1 + 33292 21352 21199 21210 38245 38245 0.08857770405370502 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MULTI-MSMS UPN47_class_I_Rep_3 4 481.79193115234375 2 481.792727 961.5709 -0.42938 -0.00020687 0.16588 7.9921E-05 -0.2635 -0.00012695 481.792833541956 36.4 0.1852 39.655 39.584 39.77 3.2547 18 11 2 0 0 0 0.82752 1 6874 6874 4.756 0 1 48523 + 33293 21352 21199 21210 38246 38246 0.08857770405370502 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MSMS UPN47_class_I_Rep_3 4 481.79278564453125 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 36.169 1 39.424 38.924 39.924 3.2547 0 0 0 0.4044 1 6788 6788 4.756 0.81161 1 + 33294 21352 21199 21210 38247 38247 0.08857770405370502 QLKFKKGN 8 Unmodified _QLKFKKGN_ 0 0 0 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 REV__nc|ENSG00000249715|A0AVI2-4|FER1L5 MSMS UPN47_class_I_Rep_3 4 481.79254150390625 2 481.792727 961.5709 NaN NaN NaN NaN NaN NaN NaN 36.291 1 39.545 39.045 40.045 3.2547 0 0 0 0.4044 1 6825 6825 4.756 0.81161 1 + 33295 21352 21199 21210 38248 38248 0.08857770405370502 QLKGQLPKKVG 11 Unmodified _QLKGQLPKKVG_ 0 0 0 REV__L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|77|2|sense REV__L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|77|2|sense MSMS UPN47_class_I_Rep_1 2 598.3775024414062 2 598.379697 1194.74484 NaN NaN NaN NaN NaN NaN NaN 90.565 1 94.255 93.755 94.755 3.6899 0 0 0 0.38417 1 22622 22622 0.30703 0 1 + 33296 30396 21200 21211 38249 38249 0.1552593111080114 QLKIPFRF 8 Unmodified _QLKIPFRF_ 0 0 0 Charlie2b_dup473|chr2:190915797-190916136:+|1.5298225386994284|0.4619342862289035|1.73|150.0|26|3|anti-sense Charlie2b_dup473|chr2:190915797-190916136:+|1.5298225386994284|0.4619342862289035|1.73|150.0|26|3|anti-sense Charlie2b_dup473|chr2:190915797-190916136:+|1.5298225386994284|0.4619342862289035|1.73|150.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 524.8181762695312 2 524.818744 1047.62294 NaN NaN NaN NaN NaN NaN NaN 39.402 1 42.907 42.407 43.407 3.5048 0 0 0 0.40746 1 6953 6953 0.69038 0 1 33297 514 21201 21212 38250 38250 0.10102933819121063 QLKIVDWTV 9 Unmodified _QLKIVDWTV_ 0 0 0 REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8 REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8 MULTI-SECPEP UPN48_class_I_Rep_1 5 550.7849731445312 2 551.318774 1100.623 0.54271 0.00029921 -0.346 -0.00019075 0.19672 0.00010845 551.3184541682264 68.238 0.66473 71.69 71.396 72.06 3.4517 129 58 3 0 0 0 0.10341 1 15724 15724 16.942 0 1 260570 + 33298 20028 21202 21213 38251 38251 0.07670889028440797 QLKIVDWTV 9 Unmodified _QLKIVDWTV_ 0 0 0 REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8 REV__nc|ENSG00000164073|Q8NHS3-2|MFSD8 MULTI-MATCH UPN48_class_I_Rep_3 7 2 551.318774 1100.623 0.46305 0.00025529 -0.16243 -8.9549E-05 0.30063 0.00016574 551.3185128109149 68.403 0.073364 71.912 71.872 71.946 3.5094 0.16607 0.00015384 NaN 21.747 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 245370 + 33299 20028 21202 21213 0.07670889028440797 QLKKDKRYQRE 11 Unmodified _QLKKDKRYQRE_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MSMS UPN47_class_I_Rep_1 2 497.9509582519531 3 497.951196 1490.83176 NaN NaN NaN NaN NaN NaN NaN 19.67 1 23.282 22.782 23.782 3.6118 0 0 0 0.38417 1 1851 1851 0.094841 0 1 + 33300 19868 21203 21214 38252 38252 0.1059768559459826 QLKKDKRYQRE 11 Unmodified _QLKKDKRYQRE_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MULTI-MSMS UPN48_class_I_Rep_2 6 498.2853698730469 3 497.951196 1490.83176 0.35221 0.00017539 -0.45337 -0.00022575 -0.10115 -5.0369E-05 497.95104735187255 21.397 0.27297 25.043 24.902 25.175 3.6459 50 30 2 0 0 0 0.68024 2 2026 2026;2029 0.50596 0.051438 1 86836 + 33301 19868 21203 21214 38253;38254 38253 0.1059768559459826 QLKKEEAL 8 Unmodified _QLKKEEAL_ 0 0 0 REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|3|1|sense REV__L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.7814025878906 2 479.782025 957.549496 -0.44543 -0.00021371 -0.44345 -0.00021276 -0.88888 -0.00042647 479.78192264782854 36.773 0.47807 40.02 39.858 40.336 3.247 38 34 2 0 0 0 0.82752 1 6961 6961 0.79363 0 1 51409 + 33302 30384 21204 21215 38255 38255 0.06902340585986622 QLKKLFKTSY 10 Unmodified _QLKKLFKTSY_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS UPN46_class_I_Rep_3 1 628.3744506835938 2 628.374081 1254.73361 0.42728 0.00026849 -0.071932 -4.52E-05 0.35534 0.00022329 628.3738288108375 29.64 0.050209 29.64 29.613 29.663 0 6 4 2 0 0 0 0.56486 1 4721 4721 0.40072 0 1 22334 + 33303 20457 21205 21216 38256 38256 0.11643109016722519 QLKLEEQI 8 Unmodified _QLKLEEQI_ 0 0 0 REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C REV__nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS UPN47_class_I_Rep_2 3 500.78759765625 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 65.38 1 68.636 68.136 69.136 3.2556 0 0 0 0.40292 1 15638 15638 6.7232 0 1 + 33304 18043 21206 21217 38257 38257 0.060263232404167866 QLKLKQQRR 9 Unmodified _QLKLKQQRR_ 0 0 0 HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|63|2|sense;HERVK9-int_dup366|chr9:131680885-131683649:+|2.6613483235976814|0.0408622744440483|6.03|151.0|61|3|sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|63|2|sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|63|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.3822021484375 2 599.380563 1196.74657 0.51945 0.00031135 -0.77191 -0.00046267 -0.25247 -0.00015132 599.8814122069671 95.42 0.3943 99.185 99.005 99.399 3.7648 67 51 2 0 0 0 0.50088 1 23723 23723 0.52476 0 1 256030 33305 8311 21207 21218 38258 38258 0.15606984919440947 QLKLLMPTL 9 Unmodified _QLKLLMPTL_ 0 0 0 REV__L1MB3_dup1964|chr2:86531550-86533509:-|2.615057290675124|0.2163194979606704|3.6|151.0|5|1|sense REV__L1MB3_dup1964|chr2:86531550-86533509:-|2.615057290675124|0.2163194979606704|3.6|151.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 528.3267211914062 2 528.827921 1055.64129 0.43183 0.00022836 1.465 0.00077472 1.8968 0.0010031 528.8278985055448 64.065 0.12857 67.523 67.438 67.567 3.4578 9 7 2 0 0 0 0.12462 1 14476 14476 0.45834 0 1 92442 + 33306 25858 21208 21219 38259 38259 0.11569307678814766 QLKPHKVK 8 Unmodified _QLKPHKVK_ 0 0 0 Tigger7_dup1795|chrX:44915528-44916213:+|2.540736743785437|0.0098694485511298|8.01|151.0|42|2|anti-sense Tigger7_dup1795|chrX:44915528-44916213:+|2.540736743785437|0.0098694485511298|8.01|151.0|42|2|anti-sense Tigger7_dup1795|chrX:44915528-44916213:+|2.540736743785437|0.0098694485511298|8.01|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 489.3144836425781 2 489.316369 976.618185 NaN NaN NaN NaN NaN NaN NaN 86.465 1 90.08 89.58 90.58 3.6153 0 0 0 0.40604 1 21600 21600 2.5775 0 1 33307 33455 21209 21220 38260 38260 0.12894049676367558 QLKPLHLNRL 10 Unmodified _QLKPLHLNRL_ 0 0 0 MER57A-int_dup322|chr3:136686610-136687217:-|1.5552755734236998|0.0067869715246023|7.84|151.0|11|2|sense MER57A-int_dup322|chr3:136686610-136687217:-|1.5552755734236998|0.0067869715246023|7.84|151.0|11|2|sense MER57A-int_dup322|chr3:136686610-136687217:-|1.5552755734236998|0.0067869715246023|7.84|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 616.3848266601562 2 616.385314 1230.75608 NaN NaN NaN NaN NaN NaN NaN 72.634 1 76.171 75.671 76.671 3.5373 0 0 0 0.53105 1 16942 16942 0.40072 0 1 33308 16118 21210 21221 38261 38261 0.14992753204978726 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 471.7735900878906 2 471.774003 941.533452 0.24419 0.0001152 -1.1754 -0.0005545 -0.93116 -0.0004393 471.77330721964955 109.35 0.17963 109.35 109.24 109.42 0 25 15 2 0 0 0 0.82752 1 26833 26833 13.508 8.2772 1 2590100 + 33309 21589 21211 21222 38262 38262 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 471.7732849121094 2 471.774003 941.533452 0.22758 0.00010736 -1.5034 -0.00070924 -1.2758 -0.00060188 471.7731132805772 109.08 0.14729 112.68 112.59 112.73 3.6046 13 7 3 0 0 0 0.82752 1 26857 26857 8.5933 2.8329 1 3055300 + 33310 21589 21211 21222 38263 38263 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 471.77349853515625 2 471.774003 941.533452 0.055003 2.5949E-05 -0.78645 -0.00037103 -0.73145 -0.00034508 471.7734529867327 108.81 0.3379 112.35 112.19 112.53 3.5382 63 36 2 0 0 0 0.82752 1 26714 26714 8.5933 0.68312 1 11178000 + 33311 21589 21211 21222 38264 38264 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 471.774003 941.533452 0.24419 0.0001152 -1.1754 -0.0005545 -0.93116 -0.0004393 471.77330721964955 109.35 0.17963 109.35 109.24 109.42 0 0 0 NaN 13.508 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2590100 + 33312 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 471.774003 941.533452 0.22758 0.00010736 -1.5034 -0.00070924 -1.2758 -0.00060188 471.7731132805772 109.08 0.14729 112.68 112.59 112.73 3.6046 -0.21991 -0.00031529 NaN 8.5933 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3055300 + 33313 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 471.774003 941.533452 0.22734 0.00010725 -0.96353 -0.00045457 -0.73619 -0.00034732 471.77342907909946 108.76 0.22823 112.4 112.28 112.5 3.6355 -0.0057398 -2.0312E-05 NaN 8.5933 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 11125000 + 33314 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 471.774003 941.533452 0.27248 0.00012855 -1.1743 -0.000554 -0.90181 -0.00042545 471.7731689061446 109.34 0.33531 112.87 112.73 113.07 3.5307 -0.03379 -4.8061E-06 NaN 8.5933 64 43 2 NaN NaN NaN NaN 0 NaN NaN 0 1064600 + 33315 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 471.774003 941.533452 0.27193 0.00012829 -0.91186 -0.00043019 -0.63993 -0.0003019 471.7734081969699 108.81 0.48006 112.34 112.18 112.66 3.5333 -0.066518 2.8436E-05 NaN 8.5933 101 53 2 NaN NaN NaN NaN 0 NaN NaN 0 11547000 + 33316 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 471.774003 941.533452 0.055003 2.5949E-05 -0.78645 -0.00037103 -0.73145 -0.00034508 471.7734529867327 108.81 0.3379 112.35 112.19 112.53 3.5382 -0.05601 0.00014677 NaN 8.5933 63 36 2 NaN NaN NaN NaN 0 NaN NaN 0 11178000 + 33317 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 471.774003 941.533452 0.084479 3.9855E-05 -1.5399 -0.00072646 -1.4554 -0.00068661 471.77325187881047 109.43 0.035675 113.06 113.03 113.07 3.6321 0.15382 -0.00034973 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 332000 + 33318 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 471.774003 941.533452 0.084395 3.9815E-05 -1.0176 -0.00048009 -0.93324 -0.00044028 471.7733850438453 108.77 0.45088 112.41 112.27 112.72 3.6321 -0.00076065 -7.1368E-05 NaN 8.5933 71 51 2 NaN NaN NaN NaN 0 NaN NaN 0 11015000 + 33319 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 471.774003 941.533452 0.21102 9.9554E-05 -1.0339 -0.00048777 -0.82288 -0.00038821 471.7733487999559 109.3 0.29484 112.97 112.87 113.17 3.6715 0.070055 0.00012766 NaN 8.5933 57 37 2 NaN NaN NaN NaN 0 NaN NaN 0 1444400 + 33320 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 471.774003 941.533452 0.21113 9.9607E-05 -0.91049 -0.00042954 -0.69935 -0.00032994 471.7734505265714 108.82 0.4922 112.49 112.29 112.78 3.6746 0.084722 2.9734E-05 NaN 8.5933 97 52 2 NaN NaN NaN NaN 0 NaN NaN 0 8472800 + 33321 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 471.774003 941.533452 0.20604 9.7203E-05 -1.1412 -0.00053839 -0.93517 -0.00044119 471.77315696884665 109.26 0.20287 112.93 112.84 113.04 3.6751 0.029827 2.6409E-05 NaN 8.5933 43 29 2 NaN NaN NaN NaN 0 NaN NaN 0 1228900 + 33322 21589 21211 21222 0.06034679139747823 QLKPPFNV 8 Unmodified _QLKPPFNV_ 0 0 0 REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF REV__ENST00000265077.7_1_5:82767583-82767826:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 471.774003 941.533452 0.20599 9.7182E-05 -1.0447 -0.00049286 -0.8387 -0.00039568 471.77338838698023 108.78 0.33284 112.45 112.31 112.65 3.6751 0.044307 -9.6893E-05 NaN 8.5933 61 35 2 NaN NaN NaN NaN 0 NaN NaN 0 9820300 + 33323 21589 21211 21222 0.06034679139747823 QLKPTEMY 8 Unmodified _QLKPTEMY_ 0 0 0 REV__L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|51|2|sense REV__L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|51|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 504.8088073730469 2 505.254785 1008.49502 0.1778 8.9833E-05 -0.47422 -0.0002396 -0.29642 -0.00014977 505.2544470849768 35.592 0.11623 35.592 35.536 35.652 0 12 8 2 0 0 0 0.72333 1 6485 6485 4.756 0 1 40678 + 33324 27588 21212 21223 38265 38265 -0.00888994557078604 QLKQKNKK 8 Unmodified _QLKQKNKK_ 0 0 0 REV__L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|77|3|sense REV__L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|77|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.8237609863281 2 507.824558 1013.63456 -0.28277 -0.0001436 -0.34995 -0.00017771 -0.63272 -0.00032131 507.82438238682636 14.156 0.19262 17.631 17.545 17.737 3.475 34 23 2 0 0 0 0.82752 1 508 508 2.3027 0 1 32643 + 33325 30735 21213 21224 38266 38266 0.1282913084246502 QLKQLARIYI 10 Unmodified _QLKQLARIYI_ 0 0 0 MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|10|1|sense MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|10|1|sense MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 623.38818359375 2 623.387522 1244.76049 0.67281 0.00041942 0.35641 0.00022218 1.0292 0.00064161 623.3876590941178 108.82 0.90051 108.82 108.68 109.58 0 153 69 4 0 0 0 0.47413 2 26657 26657;26757 13.906 5.7505 1 24422000 33326 16153 21214 21225 38267;38268 38267 0.14790217627887614 QLKQLARIYI 10 Unmodified _QLKQLARIYI_ 0 0 0 MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|10|1|sense MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|10|1|sense MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 623.3875122070312 2 623.387522 1244.76049 0.42655 0.00026591 0.34206 0.00021323 0.76861 0.00047914 623.3875957712019 108.68 0.57268 112.31 112.19 112.76 3.6321 164 67 4 0 0 0 0.52083 1 26426 26426 9.3831 0.63772 1 22086000 33327 16153 21214 21225 38269 38269 0.14790217627887614 QLKQLTEFY 9 Unmodified _QLKQLTEFY_ 0 0 0 MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|51|2|sense MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|51|2|sense MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|51|2|sense MSMS UPN47_class_I_Rep_1 2 585.315673828125 2 585.313689 1168.61282 NaN NaN NaN NaN NaN NaN NaN 69.251 1 72.618 72.118 73.118 3.3678 0 0 0 0.34056 1 16768 16768 8.5933 0 1 33328 16160 21215 21226 38270 38270 0.035262813032204576 QLKQNKHKQG 10 Unmodified _QLKQNKHKQG_ 0 0 0 ENST00000379887.8_2_15:72875657-72875942:+|nuORF ENST00000379887.8_2_15:72875657-72875942:+|nuORF ENST00000379887.8_2_15:72875657-72875942:+|nuORF MSMS UPN47_class_I_Rep_1 2 604.8473510742188 2 604.846553 1207.67855 NaN NaN NaN NaN NaN NaN NaN 70.847 1 74.219 73.719 74.719 3.3713 0 0 0 0.53105 1 17239 17239 1.4819 0 1 33329 6483 21216 21227 38271 38271 0.08302115268793386 QLKRIRYYRQR 11 Unmodified _QLKRIRYYRQR_ 0 0 0 REV__L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|24|3|sense REV__L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|24|3|sense MSMS UPN48_class_I_Rep_1 5 527.316650390625 3 527.31458 1578.92191 NaN NaN NaN NaN NaN NaN NaN 28.244 1 31.801 31.301 32.301 3.5571 0 0 0 0.38417 1 3749 3749 0.094841 0.011491 1 + 33330 24401 21217 21228 38272 38272 0.1556077971367813 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN47_class_I_Rep_1 2 638.93212890625 2 638.932431 1275.85031 0.57285 0.00036601 -1.1296 -0.00072174 -0.55676 -0.00035573 638.9317056373106 107.87 0.32736 111.51 111.43 111.76 3.6418 31 21 2 0 0 0 0.56486 2 26468 26468;26479 0.40072 0.093686 1 2824000 33331 2450 21218 21229 38273;38274 38273 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN47_class_I_Rep_2 3 638.9324951171875 2 638.932431 1275.85031 0.63445 0.00040537 -1.3347 -0.00085281 -0.70029 -0.00044744 638.9317366355074 107.9 0.11054 111.43 111.37 111.49 3.5345 17 11 2 0 0 0 0.56486 1 26138 26138 0.40072 0 1 1748000 33332 2450 21218 21229 38275 38275 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN47_class_I_Rep_2 3 638.9319458007812 2 638.932431 1275.85031 0.63446 0.00040538 -0.91458 -0.00058435 -0.28012 -0.00017898 638.9317888500786 108.11 0.41006 111.64 111.48 111.89 3.5333 60 43 2 0 0 0 0.56486 2 26177 26177;26219 0.40072 0.093686 1 2815100 33333 2450 21218 21229 38276;38277 38276 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN47_class_I_Rep_3 4 638.9320678710938 2 638.932431 1275.85031 0.51431 0.00032861 -0.78113 -0.00049909 -0.26682 -0.00017048 638.9320469348078 107.98 0.33668 111.52 111.37 111.7 3.5382 55 38 2 0 0 0 0.56486 1 26348 26348 0.40072 0 1 2839200 33334 2450 21218 21229 38278 38278 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN48_class_I_Rep_2 6 639.4344482421875 2 638.932431 1275.85031 0.49885 0.00031873 -0.71091 -0.00045423 -0.21207 -0.0001355 638.931814827564 108.02 0.11688 111.69 111.59 111.71 3.6746 26 10 3 0 0 0 0.56486 1 25565 25565 0.40072 0.093686 1 3981500 33335 2450 21218 21229 38279 38279 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN48_class_I_Rep_3 7 638.9320678710938 2 638.932431 1275.85031 0.6302 0.00040265 -0.9391 -0.00060002 -0.30891 -0.00019737 638.9317653154615 107.89 0.27821 111.57 111.38 111.66 3.6813 46 29 2 0 0 0 0.56486 1 25447 25447 0.40072 0 1 3471400 33336 2450 21218 21229 38280 38280 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS UPN48_class_I_Rep_3 7 638.9326171875 2 638.932431 1275.85031 0.63015 0.00040262 -0.80509 -0.0005144 -0.17494 -0.00011177 638.931930266369 108.16 0.38388 111.84 111.76 112.15 3.6813 62 37 2 0 0 0 0.56333 1 25606 25606 1.4819 1.0236 1 3864500 33337 2450 21218 21229 38281 38281 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 638.932431 1275.85031 0.57339 0.00036636 -0.96049 -0.00061369 -0.3871 -0.00024733 638.9317163802865 108.23 0.37719 111.86 111.76 112.13 3.6355 -0.035106 9.3792E-06 NaN 1.4819 91 37 3 NaN NaN NaN NaN 0 NaN NaN 0 2404900 33338 2450 21218 21229 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 638.932431 1275.85031 0.63446 0.00040538 -0.91458 -0.00058435 -0.28012 -0.00017898 638.9317888500786 108.11 0.41006 111.64 111.48 111.89 3.5333 -0.067701 0.00018787 NaN 0.40072 60 43 2 NaN NaN NaN NaN 0 NaN NaN 0 2815100 33339 2450 21218 21229 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 638.932431 1275.85031 0.51427 0.00032859 -1.3208 -0.00084388 -0.80649 -0.00051529 638.9317160069353 108.37 0.083679 111.91 111.88 111.96 3.5382 0.0068067 -0.00045101 NaN 1.4819 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1186300 33340 2450 21218 21229 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 638.932431 1275.85031 0.43446 0.00027759 -1.239 -0.00079164 -0.80454 -0.00051405 638.9315624961471 108.11 0.50781 111.74 111.42 111.93 3.6313 0.026386 -0.0002267 NaN 0.40072 69 42 2 NaN NaN NaN NaN 0 NaN NaN 0 2058800 33341 2450 21218 21229 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 638.932431 1275.85031 0.49886 0.00031874 -0.78352 -0.00050062 -0.28467 -0.00018188 638.931802506641 108.16 0.36975 111.83 111.72 112.09 3.6746 -0.066761 0.00023551 NaN 1.4819 78 41 3 NaN NaN NaN NaN 0 NaN NaN 0 3712100 33342 2450 21218 21229 0.22341892027111498 QLKRKILIKH 10 Unmodified _QLKRKILIKH_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 638.932431 1275.85031 0.6306 0.00040291 -1.0675 -0.00068209 -0.43694 -0.00027918 638.9317347240442 108.03 0.080879 111.71 111.67 111.75 3.6813 0.0012986 -7.6073E-06 NaN 0.40072 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2305600 33343 2450 21218 21229 0.22341892027111498 QLKSAYLIKIS 11 Unmodified _QLKSAYLIKIS_ 0 0 0 L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|169|1|anti-sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|169|1|anti-sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|169|1|anti-sense MSMS UPN46_class_I_Rep_3 1 632.3851318359375 2 632.387188 1262.75982 NaN NaN NaN NaN NaN NaN NaN 24.327 1 24.327 23.827 24.827 0 0 0 0 0.38417 1 3180 3180 0.96228 0 1 33344 10128 21219 21230 38282 38282 0.13895378188158247 QLKSKSSLFL 10 Unmodified _QLKSKSSLFL_ 0 0 0 ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF MSMS UPN46_class_I_Rep_3 1 575.844482421875 2 575.845156 1149.67576 NaN NaN NaN NaN NaN NaN NaN 87.845 1 87.845 87.345 88.345 0 0 0 0 0.53105 1 21071 21071 8.1555 0 1 33345 7427 21220 21231 38283 38283 0.10690847091291289 QLKTLQPL 8 Unmodified _QLKTLQPL_ 0 0 0 L1M1_dup9180|chr19:57880918-57883074:+|3.152056530915087|0.1189928307585367|4.73|151.0|125|3|anti-sense;L1M1_dup9177|chr19:57832386-57834551:-|4.74119624509961|0.1330696641649634|5.15|151.0|120|3|anti-sense L1M1_dup9180|chr19:57880918-57883074:+|3.152056530915087|0.1189928307585367|4.73|151.0|125|3|anti-sense L1M1_dup9180|chr19:57880918-57883074:+|3.152056530915087|0.1189928307585367|4.73|151.0|125|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 470.79437255859375 2 470.794935 939.575317 -0.52259 -0.00024603 -0.32399 -0.00015253 -0.84658 -0.00039856 470.7948347684566 38.082 1.3075 41.323 40.839 42.146 3.2414 237 98 3 0 0 0 0.82752 1 7266 7266 15.847 0 1 397470 33346 8646 21221 21232 38284 38284 0.10311234828270699 QLKTRAKL 8 Unmodified _QLKTRAKL_ 0 0 0 HSMAR2_dup1508|chr14:58287250-58288415:-|2.258835434803233|0.2618099193786265|3.11|151.0|19|2|sense HSMAR2_dup1508|chr14:58287250-58288415:-|2.258835434803233|0.2618099193786265|3.11|151.0|19|2|sense HSMAR2_dup1508|chr14:58287250-58288415:-|2.258835434803233|0.2618099193786265|3.11|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.8000793457031 2 479.313826 956.613099 -0.3778 -0.00018109 -0.638 -0.0003058 -1.0158 -0.00048689 479.31391956552756 15.076 0.26154 18.551 18.444 18.705 3.475 45 30 2 0 0 0 0.82752 1 729 729 9.3831 1.473 1 44567 33347 8432 21222 21233 38285 38285 0.13305745813738667 QLKVLNILE 9 Unmodified _QLKVLNILE_ 0 0 0 REV__L1MB1_dup1725|chr5:43133823-43134680:+|3.681186474009472|0.1741403066700471|4.4|151.0|32|3|sense REV__L1MB1_dup1725|chr5:43133823-43134680:+|3.681186474009472|0.1741403066700471|4.4|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 535.3351440429688 2 535.334424 1068.6543 0.49419 0.00026456 1.0779 0.00057702 1.5721 0.00084158 535.3348518009373 109.08 0.1606 112.68 112.61 112.77 3.6046 31 9 5 0 0 0 0.36392 1 26873 26873 10.074 0 1 20445000 + 33348 25576 21223 21234 38286 38286 0.12271462062562932 QLKVLNILE 9 Unmodified _QLKVLNILE_ 0 0 0 REV__L1MB1_dup1725|chr5:43133823-43134680:+|3.681186474009472|0.1741403066700471|4.4|151.0|32|3|sense REV__L1MB1_dup1725|chr5:43133823-43134680:+|3.681186474009472|0.1741403066700471|4.4|151.0|32|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 535.3346557617188 2 535.334424 1068.6543 0.44836 0.00024002 1.7916 0.00095909 2.2399 0.0011991 535.3351261142333 108.6 0.061485 112.27 112.23 112.29 3.6746 6 2 3 0 0 0 0.36392 1 25778 25778 10.074 0 1 4337300 + 33349 25576 21223 21234 38287 38287 0.12271462062562932 QLKVRSAL 8 Unmodified _QLKVRSAL_ 0 0 0 REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|73|3|anti-sense REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|73|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 458.27880859375 2 457.792727 913.5709 -0.67285 -0.00030802 0.55864 0.00025574 -0.1142 -5.2281E-05 457.7927464657337 37.616 0.63943 40.857 40.494 41.133 3.2414 57 46 2 0 0 0 0.82752 1 7221 7221 6.2058 1.4498 1 78068 + 33350 30797 21224 21235 38288 38288 0.11065770405377862 QLKVRSAL 8 Unmodified _QLKVRSAL_ 0 0 0 REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|73|3|anti-sense REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|73|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 457.792727 913.5709 -0.34343 -0.00015722 0.0025284 1.1575E-06 -0.3409 -0.00015606 457.7925486213121 36.964 0.4971 40.633 40.345 40.842 3.6692 -0.14189 -0.00020603 NaN 6.2058 55 42 2 NaN NaN NaN NaN 0 NaN NaN 0 83702 + 33351 30797 21224 21235 0.11065770405377862 QLKWYEDY 8 Unmodified _QLKWYEDY_ 0 0 0 ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 MSMS UPN47_class_I_Rep_1 2 572.7669677734375 2 572.769114 1143.52368 NaN NaN NaN NaN NaN NaN NaN 40.508 1 44.18 43.68 44.68 3.6719 0 0 0 0.40604 1 8040 8040 2.5775 0.51773 1 33352 4677 21225 21236 38289 38289 -0.042345536563061614 QLLARKGTK 9 Unmodified _QLLARKGTK_ 0 0 0 L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.823974609375 2 507.824558 1013.63456 -0.23933 -0.00012154 -0.89342 -0.0004537 -1.1327 -0.00057524 507.824052848216 14.255 0.23372 17.642 17.549 17.783 3.3871 36 28 2 0 0 0 0.49187 1 532 532 1.4819 0.79152 1 34953 33353 14226 21226 21237 38290 38290 0.1282913084246502 QLLARKGTK 9 Unmodified _QLLARKGTK_ 0 0 0 L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 507.824558 1013.63456 -0.28277 -0.0001436 -0.34995 -0.00017771 -0.63272 -0.00032131 507.82438238682636 14.156 0.19262 17.631 17.545 17.737 3.475 -0.0201 0.00020178 NaN 1.4819 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 32643 33354 14226 21226 21237 0.1282913084246502 QLLARKGTK 9 Unmodified _QLLARKGTK_ 0 0 0 L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|134|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.824558 1013.63456 -0.61 -0.00030977 0.051234 2.6018E-05 -0.55876 -0.00028375 507.8246734338379 14.311 0.13686 17.681 17.605 17.742 3.3697 0.029493 0.00060925 NaN 1.4819 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 17309 33355 14226 21226 21237 0.1282913084246502 QLLARLRHK 9 Unmodified _QLLARLRHK_ 0 0 0 AluSz6_dup18178|chr7:37170616-37170904:-|1.1551966100461015|0.0195422755308891|5.89|151.0|13|3|sense;AluSp_dup16599|chr6:25030684-25030995:-|1.1072272041295146|0.0339796619087174|5.03|150.0|8|2|sense AluSz6_dup18178|chr7:37170616-37170904:-|1.1551966100461015|0.0195422755308891|5.89|151.0|13|3|sense AluSz6_dup18178|chr7:37170616-37170904:-|1.1551966100461015|0.0195422755308891|5.89|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 567.86572265625 2 567.864549 1133.71454 NaN NaN NaN NaN NaN NaN NaN 47.066 1 50.761 50.261 51.261 3.6951 0 0 0 0.4007 1 10043 10043 0.52476 0 1 33356 228 21227 21238 38291 38291 0.15303617236327227 QLLARLRHK 9 Unmodified _QLLARLRHK_ 0 0 0 AluSz6_dup18178|chr7:37170616-37170904:-|1.1551966100461015|0.0195422755308891|5.89|151.0|13|3|sense;AluSp_dup16599|chr6:25030684-25030995:-|1.1072272041295146|0.0339796619087174|5.03|150.0|8|2|sense AluSz6_dup18178|chr7:37170616-37170904:-|1.1551966100461015|0.0195422755308891|5.89|151.0|13|3|sense AluSz6_dup18178|chr7:37170616-37170904:-|1.1551966100461015|0.0195422755308891|5.89|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 568.2505493164062 2 567.864549 1133.71454 NaN NaN NaN NaN NaN NaN NaN 46.417 1 49.661 49.161 50.161 3.2439 0 0 0 0.4007 1 9929 9929 0.52476 0 1 33357 228 21227 21238 38292 38292 0.15303617236327227 QLLCLLQI 8 Unmodified _QLLCLLQI_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|368|3|anti-sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|368|3|anti-sense MSMS UPN47_class_I_Rep_2 3 472.2879943847656 2 472.285889 942.557224 NaN NaN NaN NaN NaN NaN NaN 88.392 1 91.839 91.339 92.339 3.4471 0 0 0 0.39819 1 21982 21982 8.5933 0 1 + 33358 26311 21228 21239 38293 38293 0.08364776581913702 QLLEAVHVF 9 Unmodified _QLLEAVHVF_ 0 0 0 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 MULTI-MSMS UPN48_class_I_Rep_1 5 528.2982788085938 2 528.297842 1054.58113 0.4277 0.00022595 -0.50013 -0.00026422 -0.07243 -3.8265E-05 528.2976962971778 64.157 0.17521 67.615 67.536 67.711 3.4578 14 11 2 0 0 0 0.36392 1 14501 14501 10.074 0 1 116000 + 33359 17428 21229 21240 38294 38294 0.056023333399252806 QLLEAVHVF 9 Unmodified _QLLEAVHVF_ 0 0 0 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 MULTI-MSMS UPN48_class_I_Rep_2 6 528.298095703125 2 528.297842 1054.58113 0.44995 0.00023771 0.015733 8.3117E-06 0.46568 0.00024602 528.2976751458237 63.885 0.074242 67.36 67.324 67.399 3.4743 6 4 2 0 0 0 0.28552 1 14400 14400 14.838 0 1 275880 + 33360 17428 21229 21240 38295 38295 0.056023333399252806 QLLEAVHVF 9 Unmodified _QLLEAVHVF_ 0 0 0 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 MULTI-SECPEP UPN48_class_I_Rep_2 6 528.298095703125 2 528.297842 1054.58113 0.44883 0.00023711 -0.21222 -0.00011211 0.23661 0.000125 528.2979418787571 63.996 0.1735 67.47 67.35 67.523 3.4743 15 9 2 0 0 0 0.11021 1 14400 14400 14.838 0 1 128390 + 33361 17428 21229 21240 38296 38296 0.056023333399252806 QLLEAVHVF 9 Unmodified _QLLEAVHVF_ 0 0 0 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 528.297842 1054.58113 0.4277 0.00022595 -0.50013 -0.00026422 -0.07243 -3.8265E-05 528.2976962971778 64.157 0.17521 67.615 67.536 67.711 3.4578 0.072414 -0.00012939 NaN 14.838 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 116000 + 33362 17428 21229 21240 0.056023333399252806 QLLEAVHVF 9 Unmodified _QLLEAVHVF_ 0 0 0 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 REV__chr11:64739473-64739636|59|16.75|0.54|4.95|-|0|None,RASGRP2|1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 528.297842 1054.58113 0.49321 0.00026056 0.088999 4.7018E-05 0.58221 0.00030758 528.2978644698846 63.624 0.11959 67.133 67.079 67.199 3.5091 -0.14049 -1.1653E-05 NaN 14.838 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 263950 + 33363 17428 21229 21240 0.056023333399252806 QLLEEQSF 8 Unmodified _QLLEEQSF_ 0 0 0 REV__nc|ENSG00000160208|Q14684-2|RRP1B REV__nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MSMS UPN47_class_I_Rep_3 4 497.24761962890625 2 497.248015 992.481476 0.13545 6.735E-05 0.44717 0.00022236 0.58262 0.00028971 497.2479914977477 59.55 0.76231 62.715 62.427 63.19 3.1651 108 53 3 0 0 0 0.82752 1 14060 14060 1.8442 0 1 281450 + 33364 32027 21230 21241 38297 38297 -0.015065290646589347 QLLEKLVS 8 Unmodified _QLLEKLVS_ 0 0 0 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS UPN46_class_I_Rep_3 1 465.4343566894531 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 44.682 1 44.682 44.182 45.182 0 0 0 0 0.40625 1 9021 9021 2.3027 0 1 + 33365 18351 21231 21242 38298 38298 0.09219528591381732 QLLFILHHV 9 Unmodified _QLLFILHHV_ 0 0 0 REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|221|1|anti-sense REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|221|1|anti-sense MSMS UPN48_class_I_Rep_1 5 560.336181640625 2 560.337301 1118.66005 NaN NaN NaN NaN NaN NaN NaN 100.86 1 104.47 103.97 104.97 3.6084 0 0 0 0.39326 1 24355 24355 2.3027 0.24298 1 + 33366 24990 21232 21243 38299 38299 0.10546605364879724 QLLFRKNLGW 10 Unmodified _QLLFRKNLGW_ 0 0 0 REV__ENST00000409609.5_1_2:189158566-189158653:+|nuORF REV__ENST00000409609.5_1_2:189158566-189158653:+|nuORF MSMS UPN48_class_I_Rep_1 5 637.8728637695312 2 637.87204 1273.72953 NaN NaN NaN NaN NaN NaN NaN 101.79 1 105.4 104.9 105.9 3.612 0 0 0 0.53105 1 24562 24562 1.6526 0.17072 1 + 33367 22184 21233 21244 38300 38300 0.10361064313656243 QLLGEAEEGEW 11 Unmodified _QLLGEAEEGEW_ 0 0 0 AluYc3_dup171|chr5:150407741-150408042:-|2.5621848410158155|0.2488081646284101|3.36|151.0|7|2|sense AluYc3_dup171|chr5:150407741-150408042:-|2.5621848410158155|0.2488081646284101|3.36|151.0|7|2|sense AluYc3_dup171|chr5:150407741-150408042:-|2.5621848410158155|0.2488081646284101|3.36|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 630.79052734375 2 630.790775 1259.567 NaN NaN NaN NaN NaN NaN NaN 41.366 1 45.038 44.538 45.538 3.6719 0 0 0 0.38417 1 8299 8299 0.96228 0.36078 1 33368 398 21234 21245 38301 38301 -0.05240408669669705 QLLHDILI 8 Unmodified _QLLHDILI_ 0 0 0 REV__ENST00000520196.5_1_8:17581327-17581649:-|nuORF REV__ENST00000520196.5_1_8:17581327-17581649:-|nuORF MSMS UPN47_class_I_Rep_1 2 482.79461669921875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 116.55 1 120.15 119.65 120.65 3.6036 0 0 0 0.40604 1 28868 28868 2.5775 0 1 + 33369 22779 21235 21246 38302 38302 0.09207234828284072 QLLHLYKQM 9 Unmodified _QLLHLYKQM_ 0 0 0 REV__ENST00000560334.5_1_15:79271198-79356973:-|nuORF REV__ENST00000560334.5_1_15:79271198-79356973:-|nuORF MSMS UPN47_class_I_Rep_3 4 587.3262939453125 2 587.326076 1172.6376 NaN NaN NaN NaN NaN NaN NaN 63.642 1 66.816 66.316 67.316 3.1741 0 0 0 0.39518 1 15168 15168 1.8442 0 1 + 33370 17712 21236 21247 38303 38303 0.05818637904962998 QLLHQYLL 8 Unmodified _QLLHQYLL_ 0 0 0 Tigger1_dup2044|chr3:11421055-11422740:-|1.5175201432140977|0.0126191053572847|6.91|151.0|111|3|anti-sense Tigger1_dup2044|chr3:11421055-11422740:-|1.5175201432140977|0.0126191053572847|6.91|151.0|111|3|anti-sense Tigger1_dup2044|chr3:11421055-11422740:-|1.5175201432140977|0.0126191053572847|6.91|151.0|111|3|anti-sense MSMS UPN46_class_I_Rep_3 1 514.2993774414062 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 90.809 1 90.809 90.309 91.309 0 0 0 0 0.40625 1 21906 21906 2.3027 0 1 33371 33045 21237 21248 38304 38304 0.07398637202550162 QLLIYIQSL 9 Unmodified _QLLIYIQSL_ 0 0 0 L1MB8_dup5231|chr5:171398088-171398492:-|1.4469176921632347|0.1060655063953878|3.77|151.0|14|3|sense L1MB8_dup5231|chr5:171398088-171398492:-|1.4469176921632347|0.1060655063953878|3.77|151.0|14|3|sense L1MB8_dup5231|chr5:171398088-171398492:-|1.4469176921632347|0.1060655063953878|3.77|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 545.8284912109375 2 545.828975 1089.6434 NaN NaN NaN NaN NaN NaN NaN 66.499 1 70.007 69.507 70.507 3.5077 0 0 0 0.38639 1 15108 15108 3.9444 0 1 33372 11012 21238 21249 38305 38305 0.10216059688286805 QLLKLVHD 8 Unmodified _QLLKLVHD_ 0 0 0 L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|314|3|anti-sense L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|314|3|anti-sense L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|314|3|anti-sense MSMS UPN47_class_I_Rep_1 2 483.2915344238281 2 483.292559 964.570566 NaN NaN NaN NaN NaN NaN NaN 24.988 1 28.737 28.237 29.237 3.7495 0 0 0 0.40746 1 3358 3358 0.69038 0 1 33373 13487 21239 21250 38306 38306 0.08686350685502475 QLLKTKSF 8 Unmodified _QLLKTKSF_ 0 0 0 ENSG00000138231|ENST00000260803|DBR1 ENSG00000138231|ENST00000260803|DBR1 ENSG00000138231|ENST00000260803|DBR1 MSMS UPN47_class_I_Rep_2 3 482.7954406738281 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 115.84 1 119.34 118.84 119.84 3.4965 0 0 0 0.40625 1 28260 28260 2.3027 0 1 33374 3074 21240 21251 38307 38307 0.09207234828284072 QLLKTYLS 8 Unmodified _QLLKTYLS_ 0 0 0 Charlie5_dup1779|chr12:11739479-11739843:+|1.2494359479980073|0.0055789401084651|7.81|151.0|13|3|sense Charlie5_dup1779|chr12:11739479-11739843:+|1.2494359479980073|0.0055789401084651|7.81|151.0|13|3|sense Charlie5_dup1779|chr12:11739479-11739843:+|1.2494359479980073|0.0055789401084651|7.81|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 483.2374267578125 2 483.286943 964.559333 NaN NaN NaN NaN NaN NaN NaN 31.688 1 31.688 31.188 32.188 0 0 0 0 0.4044 1 5327 5327 4.756 0 1 33375 531 21241 21252 38308 38308 0.07563528591379054 QLLKWKRWMRA 11 Unmodified _QLLKWKRWMRA_ 0 0 0 REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|29|3|sense REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 505.55120849609375 3 505.962491 1514.86564 NaN NaN NaN NaN NaN NaN NaN 63.825 1 63.825 63.325 64.325 0 0 0 0 0.38417 1 14342 14342 0.094841 0 1 + 33376 26244 21242 21253 38309 38309 0.12880435552642666 QLLLDTKLFF 10 Unmodified _QLLLDTKLFF_ 0 0 0 PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|23|3|sense PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|23|3|sense PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 619.3629150390625 2 619.363182 1236.71181 NaN NaN NaN NaN NaN NaN NaN 70.977 1 74.443 73.943 74.943 3.466 0 0 0 0.53105 1 16566 16566 1.4819 0 1 33377 16897 21243 21254 38310 38310 0.10292304268114094 QLLLKALT 8 Unmodified _QLLLKALT_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MSMS UPN47_class_I_Rep_3 4 450.2991027832031 2 450.299853 898.585153 NaN NaN NaN NaN NaN NaN NaN 36.137 1 39.392 38.892 39.892 3.2547 0 0 0 0.40643 1 6778 6778 2.0598 0 1 33378 1678 21244 21255 38311 38311 0.13180422833636385 QLLLLHFQL 9 Unmodified _QLLLLHFQL_ 0 0 0 REV__L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|82|1|anti-sense REV__L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|82|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.8442993164062 2 562.844959 1123.67537 NaN NaN NaN NaN NaN NaN NaN 84.595 1 84.595 84.095 85.095 0 0 0 0 0.4007 1 20134 20134 0.52476 0 1 + 33379 29247 21245 21256 38312 38312 0.11847472162094164 QLLLMPLF 8 Unmodified _QLLLMPLF_ 0 0 0 REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|55|2|sense REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|55|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 487.7905578613281 2 487.790807 973.56706 0.27936 0.00013627 0.058488 2.853E-05 0.33785 0.0001648 487.7906946757275 75.936 0.25799 79.258 79.196 79.454 3.3216 46 25 2 0 0 0 0.72333 1 18826 18826 0.69038 0 1 158820 + 33380 23635 21246 21257 38313 38313 0.0792196458729677 QLLLPVLQV 9 Unmodified _QLLLPVLQV_ 0 0 0 ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1 ENST00000508737.1_1_4:38930819-38945175:+|nuORF ENST00000508737.1_1_4:38930819-38945175:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.83203125 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 17.433 1 21.085 20.585 21.585 3.6518 0 0 0 0.39518 1 1015 1015 1.8442 0 1 33381 5385 21247 21258 38314 38314 0.14360667413518513 QLLLPVRN 8 Unmodified _QLLLPVRN_ 0 0 0 REV__L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|14|1|sense REV__L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 476.8003845214844 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 110.75 1 110.75 110.25 111.25 0 0 0 0 0.40746 1 27281 27281 0.69038 0 1 + 33382 29538 21248 21259 38315 38315 0.10882056922423544 QLLPILLK 8 Unmodified _QLLPILLK_ 0 0 0 L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|67|3|sense L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|67|3|sense L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|67|3|sense MSMS UPN48_class_I_Rep_2 6 469.771240234375 2 469.325871 936.637189 NaN NaN NaN NaN NaN NaN NaN 55.912 1 59.468 58.968 59.968 3.5559 0 0 0 0.40746 1 11960 11960 0.69038 0 1 33383 8756 21249 21260 38316 38316 0.1663358624742841 QLLPRGIP 8 Unmodified _QLLPRGIP_ 0 0 0 ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E MSMS UPN47_class_I_Rep_3 4 447.28271484375 2 447.281995 892.549437 NaN NaN NaN NaN NaN NaN NaN 109.06 1 112.6 112.1 113.1 3.538 0 0 0 0.39624 1 26774 26774 9.3474 0 1 33384 4503 21250 21261 38317 38317 0.098863853766602 QLLRAWKPVGL 11 Unmodified _QLLRAWKPVGL_ 0 0 0 L1M2_dup4959|chr9:90882655-90884134:+|11.351168732839412|0.1531024221396591|6.21|151.0|70|3|anti-sense L1M2_dup4959|chr9:90882655-90884134:+|11.351168732839412|0.1531024221396591|6.21|151.0|70|3|anti-sense L1M2_dup4959|chr9:90882655-90884134:+|11.351168732839412|0.1531024221396591|6.21|151.0|70|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 640.8945922851562 2 640.895515 1279.77648 0.50791 0.00032552 -1.2463 -0.00079878 -0.73843 -0.00047326 640.8945419027779 51.866 0.045128 55.464 55.43 55.475 3.5979 5 4 2 0 0 0 0.67264 1 10666 10666 1.1933 0 1 1358900 33385 8696 21251 21262 38318 38318 0.14777923864789955 QLLRDKAL 8 Unmodified _QLLRDKAL_ 0 0 0 ENSG00000183476|ENST00000328828|SH2D7 ENSG00000183476|ENST00000328828|SH2D7 ENSG00000183476|ENST00000328828|SH2D7 MSMS UPN48_class_I_Rep_2 6 478.7978820800781 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 62.232 1 65.706 65.206 66.206 3.4738 0 0 0 0.40292 1 13890 13890 6.7232 0 1 33386 4999 21252 21263 38319 38319 0.10189753059785289 QLLRRLRPE 9 Unmodified _QLLRRLRPE_ 0 0 0 AluJo_dup32584|chr8:27332579-27332870:-|1.0803146416393774|0.0040771968959667|8.05|150.0|9|3|sense;AluSg_dup13566|chr7:5404091-5404385:+|1.2767636344228035|0.0091566765476244|7.12|150.0|9|3|sense;AluSz_dup102456|chr22:41339347-41339642:+|1.128684176498378|0.1403284143544418|3.01|151.0|4|2|sense AluJo_dup32584|chr8:27332579-27332870:-|1.0803146416393774|0.0040771968959667|8.05|150.0|9|3|sense AluJo_dup32584|chr8:27332579-27332870:-|1.0803146416393774|0.0040771968959667|8.05|150.0|9|3|sense MSMS UPN48_class_I_Rep_1 5 590.8675537109375 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 96.215 1 99.828 99.328 100.33 3.6124 0 0 0 0.4007 1 23174 23174 0.52476 0 1 33387 104 21253 21264 38320 38320 0.13735296028153243 QLLRVVYA 8 Unmodified _QLLRVVYA_ 0 0 0 L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|366|3|anti-sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|366|3|anti-sense L1PA7_dup5877|chr7:17806657-17813125:+|1.39440312225751|0.1364670753029168|3.35|151.0|366|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.2955322265625 2 481.295102 960.575651 NaN NaN NaN NaN NaN NaN NaN 65.009 1 68.365 67.865 68.865 3.3557 0 0 0 0.40604 1 15477 15477 2.5775 0.51773 1 33388 14858 21254 21265 38321 38321 0.09378654548129362 QLLSLAFF 8 Unmodified _QLLSLAFF_ 0 0 0 L1MA9_dup6454|chr6:156000779-156003112:-|6.48060585822003|0.0827261737808788|6.29|150.0|139|3|anti-sense L1MA9_dup6454|chr6:156000779-156003112:-|6.48060585822003|0.0827261737808788|6.29|150.0|139|3|anti-sense L1MA9_dup6454|chr6:156000779-156003112:-|6.48060585822003|0.0827261737808788|6.29|150.0|139|3|anti-sense MSMS UPN48_class_I_Rep_3 7 469.77197265625 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 54.313 1 57.882 57.382 58.382 3.5694 0 0 0 0.40643 1 11406 11406 2.0598 0 1 33389 10149 21255 21266 38322 38322 0.05604160908239919 QLLSLKRRCR 10 Unmodified _QLLSLKRRCR_ 0 0 0 REV__L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|187|2|anti-sense REV__L1MA2_dup7377|chr21:15895685-15899136:+|3.158518058883742|0.0535929283729916|5.88|151.0|187|2|anti-sense MSMS UPN46_class_I_Rep_3 1 636.8880004882812 2 636.887698 1271.76084 NaN NaN NaN NaN NaN NaN NaN 36.069 1 36.069 35.569 36.569 0 0 0 0 0.53105 1 6643 6643 0.40072 0 1 + 33390 24943 21256 21267 38323 38323 0.1358331407609512 QLLTLWPL 8 Unmodified _QLLTLWPL_ 0 0 0 nc|ENSG00000170909|Q8IYS5-2|OSCAR;ENSG00000170909|ENST00000358375|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR;nc|ENSG00000170909|Q8IYS5|OSCAR;nc|ENSG00000170909|Q8IYS5-7|OSCAR;nc|ENSG00000170909|Q8IYS5-5|OSCAR nc|ENSG00000170909|Q8IYS5-2|OSCAR nc|ENSG00000170909|Q8IYS5-2|OSCAR MULTI-MSMS UPN48_class_I_Rep_1 5 492.3015441894531 2 492.299853 982.585153 0.15236 7.5009E-05 1.6615 0.00081796 1.8139 0.00089296 492.3009295311637 48.644 1.3609 52.168 51.613 52.974 3.5239 112 96 2 0 0 0 0.82752 1 9826 9826 4.756 0 1 586130 33391 4497 21257 21268 38324 38324 0.09316422833660454 QLLVVPLV 8 Unmodified _QLLVVPLV_ 0 0 0 L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|281|2|anti-sense;L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|200|2|anti-sense;L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|210|1|anti-sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|202|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7995910644531 2 440.796946 879.57934 0.11713 5.1631E-05 3.1225 0.0013764 3.2397 0.001428 440.7993288775689 70.945 0.23058 70.945 70.78 71.01 0 28 23 2 0 0 0 0.82752 1 16324 16324 0.69038 0 1 160510 33392 23577 21258 21269 38325 38325 0.1347332432200119 QLLWKLRW 8 Unmodified _QLLWKLRW_ 0 0 0 AluJr_dup69701|chr16:75004605-75004915:-|1.2160115401116507|0.0053960872695738|7.82|151.0|3|1|sense;AluJr_dup76501|chr19:7366769-7367060:-|1.129963043330447|0.0080027652529515|7.14|151.0|14|3|sense AluJr_dup69701|chr16:75004605-75004915:-|1.2160115401116507|0.0053960872695738|7.82|151.0|3|1|sense AluJr_dup69701|chr16:75004605-75004915:-|1.2160115401116507|0.0053960872695738|7.82|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 571.8438720703125 2 571.845294 1141.67603 NaN NaN NaN NaN NaN NaN NaN 22.229 1 22.229 21.729 22.729 0 0 0 0 0.40746 1 2608 2608 0.69038 0 1 33393 174 21259 21270 38326 38326 0.11086311601775378 QLLWPRSF 8 Unmodified _QLLWPRSF_ 0 0 0 REV__ENSG00000124216|ENST00000244050|SNAI1 REV__ENSG00000124216|ENST00000244050|SNAI1 MSMS UPN46_class_I_Rep_3 1 523.7484130859375 2 523.792727 1045.5709 NaN NaN NaN NaN NaN NaN NaN 42.94 1 42.94 42.44 43.44 0 0 0 0 0.4044 1 8537 8537 4.756 0 1 + 33394 17603 21260 21271 38327 38327 0.049937704053718335 QLMKPTWP 8 Unmodified _QLMKPTWP_ 0 0 0 REV__L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|9|1|sense REV__L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 500.7377624511719 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 112.66 1 116.23 115.73 116.73 3.572 0 0 0 0.40625 1 27775 27775 2.3027 0 1 + 33395 29133 21261 21272 38328 38328 0.021393194050460806 QLNLSLLSVLL 11 Unmodified _QLNLSLLSVLL_ 0 0 0 HUERS-P1-int_dup139|chr4:83098157-83099235:+|2.089599956536321|0.0131463120960161|7.31|151.0|68|2|anti-sense HUERS-P1-int_dup139|chr4:83098157-83099235:+|2.089599956536321|0.0131463120960161|7.31|151.0|68|2|anti-sense HUERS-P1-int_dup139|chr4:83098157-83099235:+|2.089599956536321|0.0131463120960161|7.31|151.0|68|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 404.9236145019531 3 404.923585 1211.74892 0.052788 2.1375E-05 -0.26891 -0.00010889 -0.21612 -8.7512E-05 404.92341871854785 41.546 0.16334 41.546 41.414 41.577 0 19 15 2 0 0 0 0.65674 1 8151 8151 2.6312 1.3016 1 132150 33396 8438 21262 21273 38329 38329 0.15151975813887475 QLNPALPGVF 10 Unmodified _QLNPALPGVF_ 0 0 0 nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MULTI-MSMS UPN48_class_I_Rep_1 5 528.2980346679688 2 528.297842 1054.58113 0.43079 0.00022758 0.15827 8.3612E-05 0.58906 0.0003112 528.2981295883601 63.869 0.21788 67.327 67.301 67.518 3.4578 22 13 2 0 0 0 0.51565 1 14427 14427 10.074 0 1 226310 33397 842 21263 21274 38330 38330 0.056023333399252806 QLNQSLQFAG 10 Unmodified _QLNQSLQFAG_ 0 0 0 REV__ENST00000372257.6_1_1:44818530-44820748:-|nuORF REV__ENST00000372257.6_1_1:44818530-44820748:-|nuORF MSMS UPN48_class_I_Rep_2 6 553.2848510742188 2 553.285463 1104.55637 NaN NaN NaN NaN NaN NaN NaN 39.236 1 42.966 42.466 43.466 3.7297 0 0 0 0.53105 1 6939 6939 1.3295 0.13619 1 + 33398 21974 21264 21275 38331 38331 0.008276534665583313 QLNSQVTYD 9 Unmodified _QLNSQVTYD_ 0 0 0 REV__L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|76|2|sense REV__L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|76|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 533.9266357421875 2 534.253828 1066.4931 -0.10378 -5.5443E-05 -0.49599 -0.00026499 -0.59977 -0.00032043 534.7553176126481 21.679 0.046434 21.679 21.644 21.69 0 7 5 2 0 0 0 0.12157 1 2463 2463 6.2058 0.97511 1 23355 + 33399 28290 21265 21276 38332 38332 -0.0374833204132301 QLNYLQHLS 9 Unmodified _QLNYLQHLS_ 0 0 0 nc|ENSG00000145604|Q13309-4|SKP2;nc|ENSG00000145604|Q13309-2|SKP2;ENSG00000145604|ENST00000274255|SKP2 nc|ENSG00000145604|Q13309-4|SKP2 nc|ENSG00000145604|Q13309-4|SKP2 MSMS UPN47_class_I_Rep_3 4 558.2932739257812 2 558.29583 1114.57711 NaN NaN NaN NaN NaN NaN NaN 23.921 1 27.272 26.772 27.772 3.3509 0 0 0 0.37476 1 3125 3125 6.7232 0.99131 1 33400 3403 21266 21277 38333 38333 0.024402438462402642 QLPGPAKP 8 Unmodified _QLPGPAKP_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MSMS UPN46_class_I_Rep_3 1 404.24908447265625 2 404.239796 806.465038 NaN NaN NaN NaN NaN NaN NaN 41.933 1 41.933 41.433 42.433 0 0 0 0 0.40604 1 8262 8262 2.5775 0 1 33401 5157 21267 21278 38334 38334 0.05406434559893114 QLPLKVFLHLL 11 Unmodified _QLPLKVFLHLL_ 0 0 0 REV__ENST00000425443.6_1_6:75825611-75827151:-|nuORF REV__ENST00000425443.6_1_6:75825611-75827151:-|nuORF MSMS UPN48_class_I_Rep_1 5 440.95172119140625 3 440.951586 1319.83293 NaN NaN NaN NaN NaN NaN NaN 65.524 1 68.976 68.476 69.476 3.4516 0 0 0 0.38417 1 14913 14913 0.50596 0 1 + 33402 22259 21268 21279 38335 38335 0.18580551701461445 QLPNINSY 8 Unmodified _QLPNINSY_ 0 0 0 nc|ENSG00000178965|Q5RHP9-3|ERICH3;ENSG00000178965|ENST00000326665|ERICH3 nc|ENSG00000178965|Q5RHP9-3|ERICH3 nc|ENSG00000178965|Q5RHP9-3|ERICH3 MULTI-MSMS UPN46_class_I_Rep_3 1 474.7429504394531 2 474.742899 947.471246 0.23963 0.00011376 -0.43445 -0.00020625 -0.19482 -9.249E-05 474.74274158932735 41.774 0.50023 41.774 41.616 42.116 0 73 56 2 0 0 0 0.82752 1 8296 8296 10.824 0 1 204520 33403 4838 21269 21280 38336 38336 -0.004590919992438103 QLPPKLQP 8 Unmodified _QLPPKLQP_ 0 0 0 LTR49-int_dup594|chr5:43576780-43577579:-|1.3447363282536182|0.4308620151562565|1.64|151.0|37|1|anti-sense LTR49-int_dup594|chr5:43576780-43577579:-|1.3447363282536182|0.4308620151562565|1.64|151.0|37|1|anti-sense LTR49-int_dup594|chr5:43576780-43577579:-|1.3447363282536182|0.4308620151562565|1.64|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 460.782958984375 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 107.78 1 107.78 107.28 108.28 0 0 0 0 0.39819 1 26291 26291 8.5933 1.304 1 33404 15669 21270 21281 38337 38337 0.0861096565678281 QLPQKKLD 8 Unmodified _QLPQKKLD_ 0 0 0 REV__nc|ENSG00000182732|P49758-12|RGS6 REV__nc|ENSG00000182732|P49758-12|RGS6 MULTI-SECPEP UPN47_class_I_Rep_2 3 484.78790283203125 2 485.290017 968.565481 -0.1679 -8.1479E-05 -1.9312 -0.00093719 -2.0991 -0.0010187 485.2887865258135 38.786 0.20558 42.165 42.062 42.267 3.3785 15 13 2 0 0 0 0.72333 1 7549 7549 2.0598 0 1 46470 + 33405 20763 21271 21282 38338 38338 0.07994046822898326 QLPQPFIYI 9 Unmodified _QLPQPFIYI_ 0 0 0 REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|259|2|anti-sense REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|259|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.8163452148438 2 559.815867 1117.61718 0.40283 0.00022551 -0.090084 -5.043E-05 0.31275 0.00017508 559.8156786736389 75.994 1.0159 79.397 78.844 79.859 3.4034 220 94 3 0 0 0 0.26948 1 18901 18901 15.847 0 1 272630 + 33406 29910 21272 21283 38339 38339 0.06307790516780187 QLPQVDEF 8 Unmodified _QLPQVDEF_ 0 0 0 REV__ENST00000582608.5_1_17:80403735-80404524:-|nuORF REV__ENST00000582608.5_1_17:80403735-80404524:-|nuORF MSMS UPN48_class_I_Rep_3 7 488.2436828613281 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 36.298 1 39.965 39.465 40.465 3.6667 0 0 0 0.40604 1 5991 5991 2.5775 0 1 + 33407 23117 21273 21284 38340 38340 -0.017345117190984638 QLPTMMMMM 9 Unmodified _QLPTMMMMM_ 0 0 0 REV__ENST00000425967.7_1_8:38285608-38287208:-|nuORF REV__ENST00000425967.7_1_8:38285608-38287208:-|nuORF MSMS UPN48_class_I_Rep_1 5 557.2353515625 2 557.235312 1112.45607 NaN NaN NaN NaN NaN NaN NaN 22.916 1 26.477 25.977 26.977 3.5605 0 0 0 0.4029 1 2308 2308 0 0 1 + 33408 22263 21274 21285 38341 38341 -0.09565825770596348 QLPVLHAPL 9 Unmodified _QLPVLHAPL_ 0 0 0 Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|10|1|sense;Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|47|3|sense Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|10|1|sense Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 494.2965393066406 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 107.67 1 111.3 110.8 111.8 3.6313 0 0 0 0.34056 1 25961 25961 8.5933 0.68312 1 33409 33399 21275 21286 38342 38342 0.09746941065156989 QLPWAIVL 8 Unmodified _QLPWAIVL_ 0 0 0 REV__Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|110|2|anti-sense REV__Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|110|2|anti-sense MSMS UPN48_class_I_Rep_2 6 470.2858581542969 2 470.286746 938.558939 NaN NaN NaN NaN NaN NaN NaN 58.887 1 62.386 61.886 62.886 3.4987 0 0 0 0.40604 1 12867 12867 2.5775 0 1 + 33410 32175 21276 21287 38343 38343 0.08720153662159191 QLQALLQIW 9 Unmodified _QLQALLQIW_ 0 0 0 ENST00000481749.5_1_3:138374233-138426144:-|nuORF;ENSG00000051382|ENST00000674063|PIK3CB ENST00000481749.5_1_3:138374233-138426144:-|nuORF ENST00000481749.5_1_3:138374233-138426144:-|nuORF MSMS UPN48_class_I_Rep_1 5 557.2822875976562 2 556.826766 1111.63898 NaN NaN NaN NaN NaN NaN NaN 43.004 1 46.514 46.014 47.014 3.5103 0 0 0 0.39428 1 8022 8022 2.0598 0 1 33411 920 21277 21288 38344 38344 0.08762595265375239 QLQEFASATRS 11 Unmodified _QLQEFASATRS_ 0 0 0 MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|6|1|sense MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|6|1|sense MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 619.3143310546875 2 619.312209 1236.60986 NaN NaN NaN NaN NaN NaN NaN 54.648 1 58.218 57.718 58.718 3.5694 0 0 0 0.38417 1 11509 11509 3.8763 0.59502 1 33412 16550 21278 21289 38345 38345 0.0010240617841645872 QLQERVTV 8 Unmodified _QLQERVTV_ 0 0 0 L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|84|2|sense L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|84|2|sense L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|84|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.7777099609375 2 486.777274 971.539994 -0.14928 -7.2664E-05 -0.045336 -2.2068E-05 -0.19461 -9.4733E-05 486.77719244511843 35.367 1.059 38.792 38.47 39.529 3.4253 162 70 3 0 0 0 0.82752 2 6651 6651;6695 6.2058 0 1 633650 33413 14404 21279 21290 38346;38347 38346 0.05308572300475589 QLQERVTV 8 Unmodified _QLQERVTV_ 0 0 0 L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|84|2|sense L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|84|2|sense L1PA4_dup9326|chr12:11377198-11383318:+|1.1425339456526389|0.0796956443850455|3.84|151.0|84|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.77728271484375 2 486.777274 971.539994 -0.38738 -0.00018857 0.091495 4.4537E-05 -0.29588 -0.00014403 486.77727828527213 35.564 1.007 38.819 38.467 39.474 3.2547 165 70 3 0 0 0 0.82752 1 6717 6717 13.906 0 1 680830 33414 14404 21279 21290 38348 38348 0.05308572300475589 QLQFRDLL 8 Unmodified _QLQFRDLL_ 0 0 0 HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|92|2|sense HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|92|2|sense HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|92|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 516.7962646484375 2 516.795466 1031.57638 0.12421 6.4192E-05 0.33074 0.00017093 0.45495 0.00023512 516.7957263155755 60.373 0.89123 63.638 63.029 63.92 3.2654 99 59 3 0 0 0 0.72333 1 14003 14003 16.942 0 1 248950 33415 8351 21280 21291 38349 38349 0.06185449197187154 QLQILVWK 8 Unmodified _QLQILVWK_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MSMS UPN48_class_I_Rep_2 6 514.3162231445312 2 514.318577 1026.6226 NaN NaN NaN NaN NaN NaN NaN 89.028 1 92.765 92.265 93.265 3.7379 0 0 0 0.40625 1 21197 21197 2.3027 0.4585 1 33416 3354 21281 21292 38350 38350 0.110355140992624 QLQKVKSF 8 Unmodified _QLQKVKSF_ 0 0 0 nc|ENSG00000204161|Q5T292-2|TMEM273 nc|ENSG00000204161|Q5T292-2|TMEM273 nc|ENSG00000204161|Q5T292-2|TMEM273 MULTI-MSMS UPN48_class_I_Rep_1 5 489.2923889160156 2 489.292559 976.570566 0.28977 0.00014178 -0.0913 -4.4672E-05 0.19848 9.7112E-05 489.29230307672697 59.258 0.51585 62.738 62.409 62.925 3.4801 37 29 2 0 0 0 0.82752 1 13038 13038 5.2307 5.2307 1 125770 33417 16804 21282 21293 38351 38351 0.0813435068552053 QLQSQNLLY 9 Unmodified _QLQSQNLLY_ 0 0 0 ENST00000457060.1_1_22:17151111-17156333:-|nuORF;ENST00000434304.2_1_22:17154630-17158220:-|nuORF;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62 ENST00000457060.1_1_22:17151111-17156333:-|nuORF ENST00000457060.1_1_22:17151111-17156333:-|nuORF MSMS UPN47_class_I_Rep_1 2 553.8136596679688 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 57.194 1 60.651 60.151 61.151 3.4572 0 0 0 0.34056 1 13118 13118 8.5933 0 1 33418 4922 21283 21294 38352 38352 0.028208241263882883 QLQSYHQL 8 Unmodified _QLQSYHQL_ 0 0 0 REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|11|1|sense REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.7618713378906 2 508.761623 1015.50869 0.22033 0.00011209 -0.29488 -0.00015002 -0.074549 -3.7928E-05 508.76145816402476 46.068 0.70203 49.587 49.337 50.039 3.5192 84 47 2 0 0 0 0.82752 1 8969 8969 15.847 0 1 197350 + 33419 29174 21284 21295 38353 38353 0.001559992663715093 QLQSYHQL 8 Unmodified _QLQSYHQL_ 0 0 0 REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|11|1|sense REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 508.7617492675781 2 508.761623 1015.50869 0.22607 0.00011502 -0.011904 -6.0565E-06 0.21417 0.00010896 508.76160309885614 45.828 0.70232 49.586 49.293 49.995 3.7579 89 50 2 0 0 0 0.82752 1 8868 8868 15.847 0 1 260920 + 33420 29174 21284 21295 38354 38354 0.001559992663715093 QLQSYHQL 8 Unmodified _QLQSYHQL_ 0 0 0 REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|11|1|sense REV__L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 508.76202392578125 2 508.761623 1015.50869 0.19655 9.9996E-05 -0.053262 -2.7098E-05 0.14329 7.2899E-05 508.76151852086537 46.014 0.6376 49.651 49.389 50.026 3.6369 76 44 2 0 0 0 0.82752 2 8853 8853;8890 15.847 0 1 259000 + 33421 29174 21284 21295 38355;38356 38355 0.001559992663715093 QLRATDGD 8 Unmodified _QLRATDGD_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MULTI-SECPEP UPN47_class_I_Rep_3 4 438.7062072753906 2 438.214506 874.414459 -1.1752 -0.000515 0.14567 6.3833E-05 -1.0296 -0.00045117 438.2146696274976 18.394 0.02577 21.748 21.734 21.76 3.3545 4 2 2 0 0 0 0.72333 1 1519 1519 0.69038 0.088878 1 16685 33422 740 21285 21296 38357 38357 -0.027771395557692813 QLREEMNHC 9 Unmodified _QLREEMNHC_ 0 0 0 REV__ERVL-E-int_dup2274|chr4:83250612-83251380:-|1.3634535135283787|0.0685958557022119|4.31|150.0|14|2|sense REV__ERVL-E-int_dup2274|chr4:83250612-83251380:-|1.3634535135283787|0.0685958557022119|4.31|150.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 580.2523193359375 2 580.252782 1158.49101 NaN NaN NaN NaN NaN NaN NaN 68.488 1 71.94 71.44 72.44 3.4517 0 0 0 0.39598 1 15818 15818 1.6526 0.85899 1 + 33423 23273 21286 21297 38358 38358 -0.08189407322424813 QLRESNFI 8 Unmodified _QLRESNFI_ 0 0 0 REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|25|3|sense REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 504.2707214355469 2 503.769448 1005.52434 0.21249 0.00010705 0.58218 0.00029328 0.79467 0.00040033 503.7698268346649 50.994 0.47079 54.518 54.24 54.711 3.5246 42 27 2 0 0 0 0.82752 1 10471 10471 11.64 0.81637 1 159850 + 33424 25697 21287 21298 38359 38359 0.021802857834245515 QLRESNFI 8 Unmodified _QLRESNFI_ 0 0 0 REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|25|3|sense REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|25|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 503.769448 1005.52434 0.28552 0.00014383 0.74806 0.00037685 1.0336 0.00052069 503.7698115751592 50.83 0.47512 54.498 54.26 54.735 3.6679 -0.030925 8.8817E-05 NaN 11.64 35 26 2 NaN NaN NaN NaN 0 NaN NaN 0 147730 + 33425 25697 21287 21298 0.021802857834245515 QLRESNFI 8 Unmodified _QLRESNFI_ 0 0 0 REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|25|3|sense REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|25|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 503.769448 1005.52434 0.14954 7.5336E-05 0.66569 0.00033535 0.81524 0.00041069 503.7697934830187 50.96 0.50774 54.571 54.294 54.802 3.6105 0.041786 5.8233E-06 NaN 11.64 36 32 2 NaN NaN NaN NaN 0 NaN NaN 0 113860 + 33426 25697 21287 21298 0.021802857834245515 QLRFLELIRY 10 Unmodified _QLRFLELIRY_ 0 0 0 REV__L1M5_dup24192|chr7:102033316-102033863:+|1.6019893915030194|0.0310226834558339|5.69|151.0|23|1|anti-sense REV__L1M5_dup24192|chr7:102033316-102033863:+|1.6019893915030194|0.0310226834558339|5.69|151.0|23|1|anti-sense MSMS UPN46_class_I_Rep_3 1 450.93658447265625 3 450.934595 1349.78196 NaN NaN NaN NaN NaN NaN NaN 33.837 1 33.837 33.337 34.337 0 0 0 0 0.53105 1 5968 5968 0.77653 0.27058 1 + 33427 24643 21288 21299 38360 38360 0.12105602656606607 QLRGSYLQL 9 Unmodified _QLRGSYLQL_ 0 0 0 REV__ENSG00000173546|ENST00000308508|CSPG4 REV__ENSG00000173546|ENST00000308508|CSPG4 MSMS UPN48_class_I_Rep_2 6 539.3063354492188 2 539.306198 1076.59784 NaN NaN NaN NaN NaN NaN NaN 60.379 1 63.858 63.358 64.358 3.4785 0 0 0 0.27207 1 13329 13329 12.241 0.74595 1 + 33428 20488 21289 21300 38361 38361 0.06260834225895451 QLRHAPAL 8 Unmodified _QLRHAPAL_ 0 0 0 REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 453.2688293457031 2 453.269419 904.524284 -1.0569 -0.00047905 -0.38553 -0.00017475 -1.4424 -0.00065381 453.26915617783186 15.44 0.3525 18.806 18.604 18.956 3.3659 63 37 2 0 0 0 0.82752 1 769 769 0.79363 0 1 39299 + 33429 22376 21290 21301 38362 38362 0.06820330574066702 QLRHAPAL 8 Unmodified _QLRHAPAL_ 0 0 0 REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 453.269419 904.524284 -0.5203 -0.00023583 -1.5405 -0.00069828 -2.0608 -0.00093411 453.26854403977774 15.806 0.074423 19.192 19.15 19.224 3.3864 0.1928 -0.00098666 NaN 0.79363 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 8472.1 + 33430 22376 21290 21301 0.06820330574066702 QLRHAPAL 8 Unmodified _QLRHAPAL_ 0 0 0 REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 453.269419 904.524284 -1.0569 -0.00047905 -0.38553 -0.00017475 -1.4424 -0.00065381 453.26915617783186 15.44 0.3525 18.806 18.604 18.956 3.3659 -0.1928 6.0397E-05 NaN 0.79363 63 37 2 NaN NaN NaN NaN 0 NaN NaN 0 39299 + 33431 22376 21290 21301 0.06820330574066702 QLRHILIHFF 10 Unmodified _QLRHILIHFF_ 0 0 0 REV__HERVK9-int_dup19|chr1:54633661-54634537:+|1.149660041491836|0.1711792799571966|2.75|150.0|23|3|sense REV__HERVK9-int_dup19|chr1:54633661-54634537:+|1.149660041491836|0.1711792799571966|2.75|150.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 441.9275207519531 3 441.927663 1322.76116 NaN NaN NaN NaN NaN NaN NaN 50.448 1 53.973 53.473 54.473 3.5246 0 0 0 0.53105 1 10303 10303 1.7423 0 1 + 33432 23826 21291 21302 38363 38363 0.11269057067579524 QLRKHKWIF 9 Unmodified _QLRKHKWIF_ 0 0 0 REV__L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|15|2|sense REV__L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 628.3744506835938 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 40.086 1 40.086 39.586 40.586 0 0 0 0 0.4007 1 7758 7758 0.52476 0 1 + 33433 25370 21292 21303 38364 38364 0.11776787896110363 QLRKKRALVLP 11 Unmodified _QLRKKRALVLP_ 0 0 0 L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense MSMS UPN47_class_I_Rep_1 2 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.162 1 46.85 46.35 47.35 3.6875 0 0 0 0.38417 1 8848 8848 0.50596 0.41111 1 33434 15199 21293 21304 38365 38365 0.22417277055819795 QLRKKRALVLP 11 Unmodified _QLRKKRALVLP_ 0 0 0 L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.997 1 36.524 36.024 37.024 3.5266 0 0 0 0.38417 1 5090 5090 0.50596 0.41111 1 33435 15199 21293 21304 38366 38366 0.22417277055819795 QLRKKRALVLP 11 Unmodified _QLRKKRALVLP_ 0 0 0 L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.659 1 55.298 54.798 55.798 3.639 0 0 0 0.38417 1 10668 10668 0.50596 0.41111 1 33436 15199 21293 21304 38367 38367 0.22417277055819795 QLRKKRALVLP 11 Unmodified _QLRKKRALVLP_ 0 0 0 L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense L1PB1_dup761|chr1:235844972-235846056:+|2.304936368091625|0.0450428547893767|5.68|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_3 7 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 48.028 1 51.661 51.161 52.161 3.6339 0 0 0 0.38417 1 9489 9489 0.45452 0.29519 1 33437 15199 21293 21304 38368 38368 0.22417277055819795 QLRLKKHLIK 10 Unmodified _QLRLKKHLIK_ 0 0 0 L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 638.9326782226562 2 638.932431 1275.85031 0.63446 0.00040538 -0.91458 -0.00058435 -0.28012 -0.00017898 638.9317888500786 108.11 0.41006 111.64 111.48 111.89 3.5333 60 43 2 0 0 0 0.56486 1 26263 26263 0.40072 0 1 2815100 33438 9409 21294 21305 38369 38369 0.22341892027111498 QLRLKKHLIK 10 Unmodified _QLRLKKHLIK_ 0 0 0 L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 638.9323120117188 2 638.932431 1275.85031 NaN NaN NaN NaN NaN NaN NaN 108.5 1 112.04 111.54 112.54 3.5382 0 0 0 0.53105 1 26565 26565 0.40072 0 1 33439 9409 21294 21305 38370 38370 0.22341892027111498 QLRLKKHLIK 10 Unmodified _QLRLKKHLIK_ 0 0 0 L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 638.9317016601562 2 638.932431 1275.85031 NaN NaN NaN NaN NaN NaN NaN 108.42 1 112.09 111.59 112.59 3.6746 0 0 0 0.53105 1 25717 25717 1.4819 0 1 33440 9409 21294 21305 38371 38371 0.22341892027111498 QLRLPPPP 8 Unmodified _QLRLPPPP_ 0 0 0 REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|81|3|sense REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|81|3|sense MSMS UPN48_class_I_Rep_1 5 459.2896423339844 2 459.281995 916.549437 NaN NaN NaN NaN NaN NaN NaN 84.699 1 88.296 87.796 88.796 3.5973 0 0 0 0.40604 1 20276 20276 2.5775 0 1 + 33441 32651 21295 21306 38372 38372 0.08782385376639468 QLRLSYGFH 9 Unmodified _QLRLSYGFH_ 0 0 0 L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|302|2|anti-sense L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|302|2|anti-sense L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|302|2|anti-sense MSMS UPN48_class_I_Rep_2 6 560.7994995117188 2 560.79854 1119.58253 NaN NaN NaN NaN NaN NaN NaN 58.951 1 62.45 61.95 62.95 3.4987 0 0 0 0.39518 1 12887 12887 1.8442 0 1 33442 9576 21296 21307 38373 38373 0.027519674287077578 QLRRKGLG 8 Unmodified _QLRRKGLG_ 0 0 0 L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|63|3|sense L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|63|3|sense L1MEf_dup9958|chr15:94287814-94289743:+|1.4861678466170984|0.0058439125421148|7.99|149.0|63|3|sense MSMS UPN46_class_I_Rep_3 1 464.5979919433594 2 464.295968 926.577383 NaN NaN NaN NaN NaN NaN NaN 59.361 1 59.361 58.861 59.861 0 0 0 0 0.40746 1 13116 13116 0.69038 0 1 33443 13350 21297 21308 38374 38374 0.11115708356760479 QLRRVVQQ 8 Unmodified _QLRRVVQQ_ 0 0 0 REV__nc|ENSG00000133561|Q6P9H5-2|GIMAP6 REV__nc|ENSG00000133561|Q6P9H5-2|GIMAP6 MSMS UPN48_class_I_Rep_2 6 513.8106079101562 2 513.811982 1025.60941 NaN NaN NaN NaN NaN NaN NaN 61.622 1 65.096 64.596 65.596 3.4738 0 0 0 0.4044 1 13704 13704 4.756 0.42677 1 + 33444 19059 21298 21309 38375 38375 0.09763076039894258 QLRWFQLF 8 Unmodified _QLRWFQLF_ 0 0 0 REV__MLT1B_dup12397|chr11:64176821-64177074:+|17.71347172920589|0.2038738316233311|6.44|151.0|13|2|anti-sense REV__MLT1B_dup12397|chr11:64176821-64177074:+|17.71347172920589|0.2038738316233311|6.44|151.0|13|2|anti-sense MSMS UPN48_class_I_Rep_2 6 569.31640625 2 569.313826 1136.6131 NaN NaN NaN NaN NaN NaN NaN 59.225 1 62.712 62.212 63.212 3.4868 0 0 0 0.38547 1 12972 12972 13.508 1.8676 1 + 33445 31615 21299 21310 38376 38376 0.050257458137366484 QLRWFQLF 8 Unmodified _QLRWFQLF_ 0 0 0 REV__MLT1B_dup12397|chr11:64176821-64177074:+|17.71347172920589|0.2038738316233311|6.44|151.0|13|2|anti-sense REV__MLT1B_dup12397|chr11:64176821-64177074:+|17.71347172920589|0.2038738316233311|6.44|151.0|13|2|anti-sense MSMS UPN48_class_I_Rep_2 6 569.3062133789062 2 569.313826 1136.6131 NaN NaN NaN NaN NaN NaN NaN 59.283 1 62.77 62.27 63.27 3.4868 0 0 0 0.36148 1 12990 12990 19.439 2.4967 1 + 33446 31615 21299 21310 38377 38377 0.050257458137366484 QLRWRHYG 8 Unmodified _QLRWRHYG_ 0 0 0 REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|227|1|anti-sense REV__L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|227|1|anti-sense MSMS UPN47_class_I_Rep_1 2 558.2947998046875 2 558.296499 1114.57845 NaN NaN NaN NaN NaN NaN NaN 23.495 1 27.199 26.699 27.699 3.7042 0 0 0 0.40625 1 2913 2913 2.3027 0.4585 1 + 33447 30094 21300 21311 38378 38378 0.025739227256508457 QLRYTYLK 8 Unmodified _QLRYTYLK_ 0 0 0 ENST00000342992.10_3_2:179400465-179400825:-|nuORF ENST00000342992.10_3_2:179400465-179400825:-|nuORF ENST00000342992.10_3_2:179400465-179400825:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.8087158203125 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 82.712 1 82.712 82.212 83.212 0 0 0 0 0.40746 1 19609 19609 0.69038 0 1 33448 6242 21301 21312 38379 38379 0.06922022231242408 QLSAYHLEQ 9 Unmodified _QLSAYHLEQ_ 0 0 0 REV__nc|ENSG00000204482|O00453-4|LST1 REV__nc|ENSG00000204482|O00453-4|LST1 MULTI-MSMS UPN47_class_I_Rep_1 2 544.771728515625 2 544.772188 1087.52982 -0.060378 -3.2893E-05 -0.13529 -7.3705E-05 -0.19567 -0.0001066 544.77204004624 18.604 1.5803 22.185 21.586 23.167 3.5806 427 188 3 0 0 0 0.43982 1 1449 1449 5.7319 0 1 316900 + 33449 21195 21302 21313 38380 38380 -0.010440354247748473 QLSCCALTTKT 11 Unmodified _QLSCCALTTKT_ 0 0 0 REV__ENST00000551843.5_1_12:92380228-92380465:-|nuORF REV__ENST00000551843.5_1_12:92380228-92380465:-|nuORF MSMS UPN48_class_I_Rep_2 6 584.790283203125 2 584.788666 1167.56278 NaN NaN NaN NaN NaN NaN NaN 16.529 1 20.182 19.682 20.682 3.6527 0 0 0 0.38417 1 836 836 0 0 1 + 33450 22964 21303 21314 38381 38381 -0.014299126886271551 QLSESSDDD 9 Unmodified _QLSESSDDD_ 0 0 0 ENST00000585583.5_1_19:39088111-39100659:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1 ENST00000585583.5_1_19:39088111-39100659:-|nuORF ENST00000585583.5_1_19:39088111-39100659:-|nuORF MSMS UPN48_class_I_Rep_1 5 498.1934814453125 2 498.193633 994.372714 NaN NaN NaN NaN NaN NaN NaN 25.605 1 29.172 28.672 29.672 3.5667 0 0 0 0.37891 1 3009 3009 5.7319 0 1 33451 1704 21304 21315 38382 38382 -0.12469784825611896 QLSESSDDD 9 Unmodified _QLSESSDDD_ 0 0 0 ENST00000585583.5_1_19:39088111-39100659:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1 ENST00000585583.5_1_19:39088111-39100659:-|nuORF ENST00000585583.5_1_19:39088111-39100659:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 498.1939697265625 2 498.193633 994.372714 0.32679 0.00016281 0.25227 0.00012568 0.57906 0.00028848 498.19368168512216 25.43 0.41462 29.066 28.916 29.331 3.6363 64 50 2 0 0 0 0.47493 1 3101 3101 3.2813 0 1 52494 33452 1704 21304 21315 38383 38383 -0.12469784825611896 QLSLLVQCF 9 Unmodified _QLSLLVQCF_ 0 0 0 REV__L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|190|2|anti-sense REV__L1PA14_dup167|chr1:180462253-180466165:+|1.1740433285785317|0.0353935678646253|5.05|151.0|190|2|anti-sense MSMS UPN47_class_I_Rep_2 3 525.7951049804688 2 525.786253 1049.55795 NaN NaN NaN NaN NaN NaN NaN 46.402 1 49.753 49.253 50.253 3.3515 0 0 0 0.25702 1 9867 9867 13.042 0 1 + 33453 29146 21305 21316 38384 38384 0.03515571230968817 QLSNVKQY 8 Unmodified _QLSNVKQY_ 0 0 0 REV__L1PA17_dup3519|chr12:46418068-46420507:+|1.3389093328256636|0.0581739043750394|4.52|151.0|30|1|sense REV__L1PA17_dup3519|chr12:46418068-46420507:+|1.3389093328256636|0.0581739043750394|4.52|151.0|30|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 490.263671875 2 490.263999 978.513445 -0.047996 -2.3531E-05 -0.033572 -1.6459E-05 -0.081569 -3.999E-05 490.2639304503681 26.26 0.49407 26.26 26.09 26.585 0 61 43 2 0 0 0 0.82752 1 3724 3724 25.399 0 1 79796 + 33454 29468 21306 21317 38385 38385 0.023328834091330464 QLSRRVLWV 9 Unmodified _QLSRRVLWV_ 0 0 0 REV__ENST00000371728.7_1_10:91461377-91465062:+|nuORF REV__ENST00000371728.7_1_10:91461377-91465062:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 578.3561401367188 2 578.851107 1155.68766 0.63487 0.0003675 2.9277 0.0016947 3.5625 0.0020622 578.8527278462153 108.31 0.17633 111.84 111.73 111.91 3.5333 26 15 3 0 0 0 0.41259 2 26253 26253;26264 7.2892 2.96 1 2165200 + 33455 21966 21307 21318 38386;38387 38386 0.11604508625100607 QLSRRVLWV 9 Unmodified _QLSRRVLWV_ 0 0 0 REV__ENST00000371728.7_1_10:91461377-91465062:+|nuORF REV__ENST00000371728.7_1_10:91461377-91465062:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 578.851107 1155.68766 0.50608 0.00029294 3.1148 0.001803 3.6209 0.002096 578.8530944986763 108.31 0.09996 111.84 111.77 111.87 3.5382 -0.00013535 0.0001263 NaN 7.2892 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1569100 + 33456 21966 21307 21318 0.11604508625100607 QLSSMSKVF 9 Unmodified _QLSSMSKVF_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS UPN48_class_I_Rep_1 5 513.7664184570312 2 513.76806 1025.52157 NaN NaN NaN NaN NaN NaN NaN 60.074 1 63.548 63.048 64.048 3.4737 0 0 0 0.38073 1 13256 13256 5.2969 0.54088 1 + 33457 20479 21308 21319 38388 38388 0.009826943342659433 QLSSMSKVF 9 Unmodified _QLSSMSKVF_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS UPN48_class_I_Rep_2 6 513.7662353515625 2 513.76806 1025.52157 NaN NaN NaN NaN NaN NaN NaN 60.092 1 63.579 63.079 64.079 3.4868 0 0 0 0.38916 1 13239 13239 3.2813 0.28607 1 + 33458 20479 21308 21319 38389 38389 0.009826943342659433 QLTALQAAR 9 Unmodified _QLTALQAAR_ 0 0 0 nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT nc|ENSG00000122966|O14578-3|CIT nc|ENSG00000122966|O14578-3|CIT MULTI-MSMS UPN48_class_I_Rep_3 7 486.7892761230469 2 486.285266 970.555979 0.13854 6.7368E-05 2.1758 0.0010581 2.3144 0.0011254 486.285078120479 35.257 0.53548 38.929 38.75 39.286 3.6721 86 55 2 0 0 0 0.32682 1 5677 5677 12.241 2.8575 1 78489 33459 2404 21309 21320 38390 38390 0.06952278537369239 QLTALSLQV 9 Unmodified _QLTALSLQV_ 0 0 0 REV__L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|59|3|anti-sense REV__L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|59|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.7906494140625 2 486.78985 971.565146 0.23349 0.00011366 0.54125 0.00026347 0.77473 0.00037713 486.78998407785207 35.097 1.0992 38.771 38.301 39.4 3.6735 136 105 2 0 0 0 0.46869 1 5877 5877 3.9444 0 1 96842 + 33460 24251 21310 21321 38391 38391 0.07822627103053037 QLTFIFVY 8 Unmodified _QLTFIFVY_ 0 0 0 REV__L1MC_dup2460|chr5:76506645-76507729:+|2.3853493647148465|0.0116916176445398|7.67|151.0|73|3|anti-sense REV__L1MC_dup2460|chr5:76506645-76507729:+|2.3853493647148465|0.0116916176445398|7.67|151.0|73|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7828369140625 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 40.019 1 40.019 39.519 40.519 0 0 0 0 0.39242 1 7738 7738 10.824 5.5933 1 + 33461 26461 21311 21322 38392 38392 0.03992430079733822 QLTFIFVY 8 Unmodified _QLTFIFVY_ 0 0 0 REV__L1MC_dup2460|chr5:76506645-76507729:+|2.3853493647148465|0.0116916176445398|7.67|151.0|73|3|anti-sense REV__L1MC_dup2460|chr5:76506645-76507729:+|2.3853493647148465|0.0116916176445398|7.67|151.0|73|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7822265625 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 40.359 1 40.359 39.859 40.859 0 0 0 0 0.39242 1 7828 7828 10.824 0.75 1 + 33462 26461 21311 21322 38393 38393 0.03992430079733822 QLTPLLTALH 10 Unmodified _QLTPLLTALH_ 0 0 0 REV__ENSG00000158286|ENST00000377939|RNF207 REV__ENSG00000158286|ENST00000377939|RNF207 MSMS UPN48_class_I_Rep_3 7 553.8297119140625 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 79.444 1 83.086 82.586 83.586 3.6423 0 0 0 0.53105 1 18838 18838 1.6526 0 1 + 33463 19843 21312 21323 38394 38394 0.10094577919790026 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MSMS UPN46_class_I_Rep_3 1 528.8185424804688 2 528.818607 1055.62266 NaN NaN NaN NaN NaN NaN NaN 70.047 1 70.047 69.547 70.547 0 0 0 0 0.31132 1 16078 16078 10.151 2.5416 1 33464 2711 21313 21324 38395 38395 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_1 2 528.8186645507812 2 528.818607 1055.62266 0.32429 0.00017149 -0.18657 -9.866E-05 0.13773 7.2832E-05 528.8184302330385 64.115 0.49473 67.471 67.14 67.635 3.3557 63 41 2 0 0 0 0.079935 1 15195 15195 38.615 8.7742 1 538170 33465 2711 21313 21324 38396 38396 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_1 2 528.818359375 2 528.818607 1055.62266 0.32139 0.00016996 -0.12586 -6.6559E-05 0.19553 0.0001034 528.8183919810782 64.34 0.49445 67.696 67.617 68.112 3.3557 79 52 2 0 0 0 0.079935 2 15272 15272;15310 38.615 8.7742 1 309580 33466 2711 21313 21324 38397;38398 38397 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_2 3 528.8179931640625 2 528.818607 1055.62266 0.14815 7.8343E-05 -0.018501 -9.7839E-06 0.12965 6.8559E-05 528.8184590390646 64.31 0.61267 67.566 67.265 67.877 3.2556 93 46 3 0 0 0 0.04399 3 15292 15251;15292;15330 51.415 21.575 1 621160 33467 2711 21313 21324 38399;38400;38401 38400 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_2 3 528.8189086914062 2 528.818607 1055.62266 0.13815 7.3058E-05 -0.14617 -7.7296E-05 -0.008014 -4.2379E-06 528.8184323796677 64.509 0.72384 67.765 67.66 68.384 3.2556 79 57 2 0 0 0 0.016816 3 15368 15368;15407;15497 65.474 29.347 1 461680 33468 2711 21313 21324 38402;38403;38404 38402 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS UPN47_class_I_Rep_3 4 528.8184204101562 2 528.818607 1055.62266 0.36155 0.00019119 -0.28819 -0.0001524 0.07336 3.8794E-05 528.818334067319 64.33 1.1207 67.505 67.203 68.324 3.1741 163 83 3 0 0 0 0.079935 4 15436 15314;15436;15475;15557 38.615 8.7742 1 595980 33469 2711 21313 21324 38405;38406;38407;38408 38406 0.09707469308591499 QLVFLALIHRV 11 Unmodified _QLVFLALIHRV_ 0 0 0 REV__MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|40|2|anti-sense REV__MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|40|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 436.6080017089844 3 436.943202 1307.80778 0.11997 5.2418E-05 -3.2022 -0.0013992 -3.0822 -0.0013468 436.94194374614005 60.569 0.24567 64.043 63.888 64.133 3.4737 25 16 2 0 0 0 22.551 1 13385 13385 2.8433 1.3882 1 81472 + 33470 31426 21314 21325 38409 38409 0.16618496898854573 QLVGLLSPMV 10 Unmodified _QLVGLLSPMV_ 0 0 0 nc|ENSG00000173226|Q15051-3|IQCB1;ENSG00000173226|ENST00000310864|IQCB1 nc|ENSG00000173226|Q15051-3|IQCB1 nc|ENSG00000173226|Q15051-3|IQCB1 MSMS UPN47_class_I_Rep_3 4 528.818603515625 2 528.809728 1055.6049 NaN NaN NaN NaN NaN NaN NaN 64.258 1 67.432 66.932 67.932 3.1741 0 0 0 0.53105 1 15356 15356 18.146 0 1 33471 4618 21315 21326 38410 38410 0.07932430782102529 QLVGVIRQI 9 Unmodified _QLVGVIRQI_ 0 0 0 REV__ENST00000469255.5_1_1:150256006-150257127:+|nuORF REV__ENST00000469255.5_1_1:150256006-150257127:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 513.3270874023438 2 513.326934 1024.63931 0.39062 0.00020051 -0.13585 -6.9737E-05 0.25476 0.00013078 513.3267935888516 59.812 0.59939 63.292 62.999 63.598 3.4801 81 47 2 0 0 0 0.13631 1 13230 13230 26.884 1.4843 1 303500 + 33472 19863 21316 21327 38411 38411 0.12798014985219197 QLVHAVFR 8 Unmodified _QLVHAVFR_ 0 0 0 MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|14|3|sense MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|14|3|sense MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 485.2855529785156 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 42.325 1 45.833 45.333 46.333 3.5079 0 0 0 0.40625 1 7815 7815 2.3027 0 1 33473 15916 21317 21328 38412 38412 0.07004903608174118 QLVKDRHSALR 11 Unmodified _QLVKDRHSALR_ 0 0 0 nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 MSMS UPN46_class_I_Rep_3 1 441.5929870605469 3 441.593232 1321.75787 NaN NaN NaN NaN NaN NaN NaN 29.956 1 29.956 29.456 30.456 0 0 0 0 0.38417 1 4812 4812 1.2148 0.021489 1 33474 2443 21318 21329 38413 38413 0.10985762222935591 QLVLGLAR 8 Unmodified _QLVLGLAR_ 0 0 0 REV__L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|31|2|sense REV__L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|31|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7801513671875 2 435.281995 868.549437 0.086774 3.7771E-05 -1.5142 -0.00065911 -1.4275 -0.00062134 435.28132637564056 51.11 0.14263 51.11 51.063 51.206 0 20 13 2 0 0 0 0.72333 1 10852 10852 2.3027 0 1 254330 + 33475 29281 21319 21330 38414 38414 0.10990385376646827 QLVLGLAR 8 Unmodified _QLVLGLAR_ 0 0 0 REV__L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|31|2|sense REV__L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|31|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 435.281995 868.549437 0.0038587 1.6796E-06 -2.0251 -0.00088147 -2.0212 -0.00087979 435.2809908893633 47.597 1.2557 51.334 50.978 52.234 3.7361 0.028208 -0.00021404 NaN 2.3027 187 98 2 NaN NaN NaN NaN 0 NaN NaN 0 541440 + 33476 29281 21319 21330 0.10990385376646827 QLVLGLAR 8 Unmodified _QLVLGLAR_ 0 0 0 REV__L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|31|2|sense REV__L1PA15_dup7230|chr14:68072669-68076015:-|2.0498558521842307|0.0370185480358909|5.79|151.0|31|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.281995 868.549437 0.056494 2.4591E-05 -1.7482 -0.00076094 -1.6917 -0.00073635 435.2811963612683 47.838 1.1181 51.472 51.069 52.187 3.6339 0.16671 2.7011E-05 NaN 2.3027 139 82 2 NaN NaN NaN NaN 0 NaN NaN 0 426200 + 33477 29281 21319 21330 0.10990385376646827 QLVNEIKSK 9 Unmodified _QLVNEIKSK_ 0 0 0 REV__Looper_dup161|chr5:32433172-32433800:-|1.3512574159111403|0.0214091273582342|5.98|151.0|11|2|sense REV__Looper_dup161|chr5:32433172-32433800:-|1.3512574159111403|0.0214091273582342|5.98|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.8146362304688 2 529.813856 1057.61316 -0.12999 -6.8868E-05 0.7071 0.00037463 0.57712 0.00030576 529.8143180215461 23.288 0.53901 26.993 26.66 27.199 3.7042 71 49 2 0 0 0 0.49026 1 2774 2774 1.6526 0.32309 1 72915 + 33478 30760 21320 21331 38415 38415 0.0866570102307378 QLVSTLGLGE 10 Unmodified _QLVSTLGLGE_ 0 0 0 nc|ENSG00000204613|Q9UDY6-2|TRIM10;ENSG00000204613|ENST00000449742|TRIM10 nc|ENSG00000204613|Q9UDY6-2|TRIM10 nc|ENSG00000204613|Q9UDY6-2|TRIM10 MSMS UPN47_class_I_Rep_1 2 508.8028564453125 2 508.784764 1015.55498 NaN NaN NaN NaN NaN NaN NaN 30.658 1 34.403 33.903 34.903 3.7449 0 0 0 0.53105 1 5041 5041 20.415 1.0526 1 33479 5531 21321 21332 38416 38416 0.04782019377819324 QLVTELQL 8 Unmodified _QLVTELQL_ 0 0 0 REV__L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|102|3|anti-sense REV__L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|102|3|anti-sense MSMS UPN47_class_I_Rep_2 3 472.2875671386719 2 472.276575 942.538597 NaN NaN NaN NaN NaN NaN NaN 89.028 1 92.481 91.981 92.981 3.4525 0 0 0 0.39819 1 22125 22125 8.5933 0 1 + 33480 27024 21322 21333 38417 38417 0.06502938211713172 QLVTELQL 8 Unmodified _QLVTELQL_ 0 0 0 REV__L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|102|3|anti-sense REV__L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|102|3|anti-sense MSMS UPN47_class_I_Rep_3 4 472.2875671386719 2 472.276575 942.538597 NaN NaN NaN NaN NaN NaN NaN 89.07 1 92.463 91.963 92.963 3.3931 0 0 0 0.4044 1 22336 22336 4.756 0 1 + 33481 27024 21322 21333 38418 38418 0.06502938211713172 QLVVTQRK 8 Unmodified _QLVVTQRK_ 0 0 0 nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2 nc|ENSG00000131480|O75106-2|AOC2 nc|ENSG00000131480|O75106-2|AOC2 MSMS UPN48_class_I_Rep_1 5 486.3028564453125 2 486.303458 970.592364 NaN NaN NaN NaN NaN NaN NaN 79.007 1 82.542 82.042 83.042 3.5352 0 0 0 0.40643 1 18846 18846 2.0598 0 1 33482 2714 21323 21334 38419 38419 0.10589155434081476 QLWSCFDW 8 Unmodified _QLWSCFDW_ 0 0 0 REV__ENST00000474157.1_1_7:23286447-23286639:+|nuORF REV__ENST00000474157.1_1_7:23286447-23286639:+|nuORF MSMS UPN47_class_I_Rep_1 2 542.730712890625 2 542.731477 1083.4484 NaN NaN NaN NaN NaN NaN NaN 31.949 1 35.678 35.178 36.178 3.7293 0 0 0 0.40604 1 5432 5432 2.5775 0 1 + 33483 22181 21324 21335 38420 38420 -0.08998434388377063 QLYAVTEQL 9 Unmodified _QLYAVTEQL_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH MULTI-MSMS UPN48_class_I_Rep_3 7 532.7846069335938 2 532.784764 1063.55498 0.37218 0.00019829 0.21346 0.00011373 0.58564 0.00031202 532.7847876701134 54.078 0.49731 57.648 57.364 57.862 3.5694 60 33 3 0 0 0 0.13244 1 11322 11322 27.629 1.3607 1 140740 33484 756 21325 21336 38421 38421 0.025740193777892273 QLYAVTEQL 9 Unmodified _QLYAVTEQL_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 532.784764 1063.55498 0.522 0.00027811 -0.30495 -0.00016247 0.21705 0.00011564 532.7844448295175 54.071 0.48933 57.653 57.407 57.896 3.5817 0.0026158 -0.00028177 NaN 27.629 50 30 2 NaN NaN NaN NaN 0 NaN NaN 0 113650 33485 756 21325 21336 0.025740193777892273 QLYIRRIILYI 11 Unmodified _QLYIRRIILYI_ 0 0 0 REV__L1M5_dup40760|chr12:132655090-132655866:-|1.6009734650541112|0.0315719270069819|5.66|151.0|12|2|sense REV__L1M5_dup40760|chr12:132655090-132655866:-|1.6009734650541112|0.0315719270069819|5.66|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 488.6414794921875 3 488.641412 1462.90241 NaN NaN NaN NaN NaN NaN NaN 62.757 1 66.231 65.731 66.731 3.4738 0 0 0 0.38417 1 14053 14053 0.094841 0 1 + 33486 24670 21326 21337 38422 38422 0.18947010650254015 QLYKLEAFV 9 Unmodified _QLYKLEAFV_ 0 0 0 REV__ENST00000356554.7_1_1:118071114-118071264:+|nuORF REV__ENST00000356554.7_1_1:118071114-118071264:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.8131103515625 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 64.296 1 67.552 67.052 68.052 3.2556 0 0 0 0.37891 1 15308 15308 5.7319 0 1 + 33487 21867 21327 21338 38423 38423 0.061674866541807205 QLYLRIKAY 9 Unmodified _QLYLRIKAY_ 0 0 0 L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|8|1|sense L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|8|1|sense L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 584.3480224609375 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 116.44 1 119.94 119.44 120.44 3.4965 0 0 0 0.40038 1 28428 28428 0.6015 0 1 33488 9144 21328 21339 38424 38424 0.10450570673765469 QLYQEYQE 8 Unmodified _QLYQEYQE_ 0 0 0 REV__ENSG00000140623|ENST00000268231|SEPTIN12 REV__ENSG00000140623|ENST00000268231|SEPTIN12 MSMS UPN47_class_I_Rep_3 4 550.7481079101562 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 114.89 1 118.37 117.87 118.87 3.4802 0 0 0 0.40625 1 28232 28232 2.3027 0 1 + 33489 19352 21329 21340 38425 38425 -0.06355734415615188 QLYSPPEL 8 Unmodified _QLYSPPEL_ 0 0 0 L1MA5A_dup1898|chr9:92991380-92992521:-|1.1323013278731942|0.0206125900546038|5.78|150.0|70|3|anti-sense L1MA5A_dup1898|chr9:92991380-92992521:-|1.1323013278731942|0.0206125900546038|5.78|150.0|70|3|anti-sense L1MA5A_dup1898|chr9:92991380-92992521:-|1.1323013278731942|0.0206125900546038|5.78|150.0|70|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 473.7479248046875 2 473.74765 945.480748 0.15791 7.4811E-05 -0.54136 -0.00025647 -0.38345 -0.00018166 473.7473804124509 67.663 0.48694 71.115 70.784 71.271 3.4517 55 35 2 0 0 0 0.82752 1 15523 15523 14.838 14.838 1 84812 33490 9940 21330 21341 38426 38426 0.0058267628628527746 QLYVLELL 8 Unmodified _QLYVLELL_ 0 0 0 L1PA5_dup1583|chr2:222584378-222590526:+|3.6584738342194023|0.1855620678288153|4.3|150.0|365|3|anti-sense;L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|290|2|anti-sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|293|2|anti-sense;L1PA3_dup512|chr1:169275509-169279839:-|1.048869413170849|0.1198277288768944|3.13|151.0|189|2|anti-sense L1PA5_dup1583|chr2:222584378-222590526:+|3.6584738342194023|0.1855620678288153|4.3|150.0|365|3|anti-sense L1PA5_dup1583|chr2:222584378-222590526:+|3.6584738342194023|0.1855620678288153|4.3|150.0|365|3|anti-sense MSMS UPN47_class_I_Rep_3 4 495.7801818847656 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 83.23 1 86.58 86.08 87.08 3.35 0 0 0 0.40581 1 20874 20874 2.8892 0 1 33491 14268 21331 21342 38427 38427 0.0845269925117691 QMEQNRGPR 9 Unmodified _QMEQNRGPR_ 0 0 0 L1PA7_dup12730|chr21:5443559-5445791:+|1.4276676922608356|0.0132323957682348|6.75|142.0|6|1|sense L1PA7_dup12730|chr21:5443559-5445791:+|1.4276676922608356|0.0132323957682348|6.75|142.0|6|1|sense L1PA7_dup12730|chr21:5443559-5445791:+|1.4276676922608356|0.0132323957682348|6.75|142.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.2714233398438 2 558.272364 1114.53017 0.35664 0.0001991 -0.97172 -0.00054248 -0.61508 -0.00034338 558.2717881003953 55.182 0.60592 58.661 58.437 59.043 3.4785 60 36 2 0 0 0 0.48643 1 12465 12465 2.0598 0 1 141130 33492 14761 21332 21343 38428 38428 -0.022509389765673404 QMIPMFMSLL 10 Unmodified _QMIPMFMSLL_ 0 0 0 REV__HERVL-int_dup747|chr5:10717681-10720094:+|1.740618247149123|0.0308809967204922|5.82|151.0|113|2|anti-sense REV__HERVL-int_dup747|chr5:10717681-10720094:+|1.740618247149123|0.0308809967204922|5.82|151.0|113|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 404.54052734375 3 404.205941 1209.59599 -0.72702 -0.00029386 0.96496 0.00039004 0.23794 9.6177E-05 404.54061990124427 61.582 0.32278 64.748 64.556 64.879 3.1667 26 24 2 0 0 0 0.51565 1 14539 14539 5.7834 0 1 56985 + 33493 23895 21333 21344 38429 38429 -0.00042002170221167034 QMKMIVLST 9 Unmodified _QMKMIVLST_ 0 0 0 REV__L1MB8_dup5969|chr6:156055896-156057216:-|1.02197801258105|0.0196403083034214|5.7|144.0|5|1|sense REV__L1MB8_dup5969|chr6:156055896-156057216:-|1.02197801258105|0.0196403083034214|5.7|144.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 525.7876586914062 2 525.787938 1049.56132 NaN NaN NaN NaN NaN NaN NaN 40.503 1 44.154 43.654 44.654 3.6509 0 0 0 0.39518 1 7211 7211 1.8442 0 1 + 33494 26426 21334 21345 38430 38430 0.03852498013316108 QMLLHAFY 8 Unmodified _QMLLHAFY_ 0 0 0 REV__L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|228|1|anti-sense REV__L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|228|1|anti-sense MSMS UPN48_class_I_Rep_1 5 511.7615661621094 2 511.760038 1021.50552 NaN NaN NaN NaN NaN NaN NaN 60.546 1 64.02 63.52 64.52 3.4737 0 0 0 0.39408 1 13402 13402 10.183 0 1 + 33495 30131 21335 21346 38431 38431 -0.0043696711198890625 QMLRMWHN 8 Unmodified _QMLRMWHN_ 0 0 0 ENST00000300870.14_1_16:31927813-31927912:+|nuORF ENST00000300870.14_1_16:31927813-31927912:+|nuORF ENST00000300870.14_1_16:31927813-31927912:+|nuORF MSMS UPN47_class_I_Rep_1 2 558.2658081054688 2 558.265496 1114.51644 NaN NaN NaN NaN NaN NaN NaN 29.075 1 32.833 32.333 33.333 3.7578 0 0 0 0.40746 1 4567 4567 0.69038 0 1 33496 6069 21336 21347 38432 38432 -0.036238880093605985 QMNEHSSR 8 Unmodified _QMNEHSSR_ 0 0 0 nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27 nc|ENSG00000165115|Q86VH2-3|KIF27 nc|ENSG00000165115|Q86VH2-3|KIF27 MSMS UPN47_class_I_Rep_1 2 494.7689208984375 2 494.71689 987.419227 NaN NaN NaN NaN NaN NaN NaN 43.747 1 47.442 46.942 47.942 3.6951 0 0 0 0.40625 1 9027 9027 2.3027 0.24298 1 33497 4155 21337 21348 38433 38433 -0.07498578684635504 QMPGMRLPET 10 Unmodified _QMPGMRLPET_ 0 0 0 nc|ENSG00000185567|Q8IVF2-2|AHNAK2;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-2|AHNAK2 nc|ENSG00000185567|Q8IVF2-2|AHNAK2 MULTI-MSMS UPN48_class_I_Rep_3 7 580.7864990234375 2 580.283551 1158.55255 0.40627 0.00023575 1.2212 0.00070863 1.6274 0.00094438 580.2838648847824 47.913 0.31458 51.546 51.346 51.66 3.6339 28 21 2 0 0 0 0.56354 1 9475 9475 1.3295 0.13619 1 102390 33498 5108 21338 21349 38434 38434 -0.02038475623157865 QMPLVRGHS 9 Unmodified _QMPLVRGHS_ 0 0 0 REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.7711791992188 2 512.771468 1023.52838 -0.25412 -0.00013031 -0.17606 -9.0278E-05 -0.43018 -0.00022059 512.7713739445871 14.52 0.59795 17.995 17.854 18.452 3.475 143 69 3 0 0 0 0.48846 1 628 628 1.8442 0 1 171040 + 33499 21856 21339 21350 38435 38435 0.017560520054985318 QMPNDQEEE 9 Unmodified _QMPNDQEEE_ 0 0 0 ENSG00000168497|ENST00000304141|CAVIN2 ENSG00000168497|ENST00000304141|CAVIN2 ENSG00000168497|ENST00000304141|CAVIN2 MSMS UPN48_class_I_Rep_2 6 559.7324829101562 2 560.216585 1118.41862 NaN NaN NaN NaN NaN NaN NaN 114.74 1 118.41 117.91 118.91 3.6616 0 0 0 0.39518 1 27440 27440 1.8442 0.36234 1 33500 4377 21340 21351 38436 38436 -0.13585462915011703 QMQGKQWQY 9 Unmodified _QMQGKQWQY_ 0 0 0 REV__ENSG00000059378|ENST00000263549|PARP12 REV__ENSG00000059378|ENST00000263549|PARP12 MSMS UPN48_class_I_Rep_2 6 598.7771606445312 2 598.77949 1195.54443 NaN NaN NaN NaN NaN NaN NaN 72.502 1 76.067 75.567 76.567 3.5645 0 0 0 0.38478 1 16971 16971 4.3292 1.334 1 + 33501 17718 21341 21352 38437 38437 -0.04552286548278062 QMRNSCRLKKT 11 Unmodified _QMRNSCRLKKT_ 0 0 0 L1MC4_dup18569|chr13:50960916-50961810:-|1.8852934822897496|0.1134989655001923|4.05|151.0|11|1|sense L1MC4_dup18569|chr13:50960916-50961810:-|1.8852934822897496|0.1134989655001923|4.05|151.0|11|1|sense L1MC4_dup18569|chr13:50960916-50961810:-|1.8852934822897496|0.1134989655001923|4.05|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 455.5801086425781 3 455.579829 1363.71766 NaN NaN NaN NaN NaN NaN NaN 71.859 1 71.859 71.359 72.359 0 0 0 0 0.38417 1 16578 16578 0.50596 0 1 33502 11425 21342 21353 38438 38438 0.05034756236477733 QMRQWRWQFLR 11 Unmodified _QMRQWRWQFLR_ 0 0 0 REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|79|3|anti-sense REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|79|3|anti-sense MSMS UPN48_class_I_Rep_3 7 545.6195068359375 3 545.621016 1633.84122 NaN NaN NaN NaN NaN NaN NaN 38.952 1 42.607 42.107 43.107 3.6557 0 0 0 0.38417 1 6754 6754 0.094841 0.094841 1 + 33503 30671 21343 21354 38439 38439 0.049651753991383885 QMRRFKKN 8 Unmodified _QMRRFKKN_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MSMS UPN48_class_I_Rep_1 5 554.3126831054688 2 554.313835 1106.61312 NaN NaN NaN NaN NaN NaN NaN 38.425 1 41.93 41.43 42.43 3.5052 0 0 0 0.40625 1 6656 6656 2.3027 0.4585 1 33504 4647 21344 21355 38440 38440 0.06407422542110908 QMRYLKML 8 Unmodified _QMRYLKML_ 0 0 0 REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|103|1|anti-sense REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|103|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 541.7607421875 2 541.796097 1081.57764 0.5053 0.00027377 3.094 0.0016763 3.5993 0.0019501 541.7980678858534 59.899 0.1303 63.416 63.322 63.452 3.5169 11 9 2 0 0 0 0.72333 1 13098 13098 4.756 0 1 106920 + 33505 26748 21345 21356 38441 38441 0.04011623970086475 QMSCIASNTVA 11 Unmodified _QMSCIASNTVA_ 0 0 0 REV__ENST00000511961.5_1_5:141354501-141357950:+|nuORF REV__ENST00000511961.5_1_5:141354501-141357950:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 562.756591796875 2 562.757366 1123.50018 -0.07717 -4.3428E-05 0.01889 1.063E-05 -0.05828 -3.2798E-05 562.75729910732 25.644 0.6141 29.402 29.128 29.742 3.7577 95 56 2 0 0 0 0.54441 2 3591 3591;3625 6.6304 1.7334 1 139450 + 33506 22743 21346 21357 38442;38443 38442 -0.05663058756772443 QNANRQQY 8 Unmodified _QNANRQQY_ 0 0 0 REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|47|1|sense REV__L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|47|1|sense MSMS UPN47_class_I_Rep_3 4 511.25433349609375 2 511.244129 1020.47371 NaN NaN NaN NaN NaN NaN NaN 13.849 1 17.219 16.719 17.719 3.3697 0 0 0 0.40625 1 409 409 2.3027 0.24298 1 + 33507 24956 21347 21358 38444 38444 -0.035712435415803157 QNAPREALAQ 10 Unmodified _QNAPREALAQ_ 0 0 0 ENSG00000214078|ENST00000397443|CPNE1;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF ENSG00000214078|ENST00000397443|CPNE1 ENSG00000214078|ENST00000397443|CPNE1 MSMS UPN48_class_I_Rep_2 6 549.3013916015625 2 549.288537 1096.56252 NaN NaN NaN NaN NaN NaN NaN 100.22 1 103.98 103.48 104.48 3.7575 0 0 0 0.53105 1 23807 23807 8.7454 0.58988 1 33508 5610 21348 21359 38445 38445 0.01810171698070917 QNCERINI 8 Unmodified _QNCERINI_ 0 0 0 MLT1C_dup1077|chr1:211796280-211796642:+|1.2954096990165709|0.1088909585787219|3.57|151.0|8|2|sense MLT1C_dup1077|chr1:211796280-211796642:+|1.2954096990165709|0.1088909585787219|3.57|151.0|8|2|sense MLT1C_dup1077|chr1:211796280-211796642:+|1.2954096990165709|0.1088909585787219|3.57|151.0|8|2|sense MSMS UPN47_class_I_Rep_2 3 495.25775146484375 2 495.245283 988.476014 NaN NaN NaN NaN NaN NaN NaN 33.951 1 37.391 36.891 37.891 3.4398 0 0 0 0.4044 1 6079 6079 4.756 0 1 33509 16289 21349 21360 38446 38446 -0.01868531128138784 QNCKILCKY 9 Unmodified _QNCKILCKY_ 0 0 0 L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|66|3|sense L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|66|3|sense L1PA14_dup429|chr2:186157621-186159799:+|1.2502681884239084|0.3246866746972212|1.95|150.0|66|3|sense MSMS UPN47_class_I_Rep_2 3 556.7850341796875 2 556.783187 1111.55182 NaN NaN NaN NaN NaN NaN NaN 60.308 1 63.581 63.081 64.081 3.2731 0 0 0 0.36505 1 14103 14103 7.2892 0 1 33510 13864 21350 21361 38447 38447 0.0005072972780908458 QNDRTPLV 8 Unmodified _QNDRTPLV_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4;ENST00000544562.5_1_14:23067206-23078652:+|nuORF;ENST00000539344.1_1_14:23067215-23072668:+|nuORF;nc|ENSG00000100439|Q8TB40-2|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS UPN47_class_I_Rep_2 3 471.75323486328125 2 471.753798 941.493044 -0.31759 -0.00014982 0.089698 4.2315E-05 -0.22789 -0.00010751 471.7537805925497 35.601 0.52868 39.012 38.823 39.352 3.4114 45 33 2 0 0 0 0.82752 1 6544 6544 1.8442 0 1 57967 33511 1507 21351 21362 38448 38448 0.01995712749339873 QNEGKYKTS 9 Unmodified _QNEGKYKTS_ 0 0 0 L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|10|1|sense L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|10|1|sense L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 527.7611083984375 2 527.76182 1053.50909 NaN NaN NaN NaN NaN NaN NaN 113.23 1 116.8 116.3 117.3 3.572 0 0 0 0.3967 1 27933 27933 1.4819 0 1 33512 11354 21352 21363 38449 38449 -0.015526258044474162 QNFFLWKQ 8 Unmodified _QNFFLWKQ_ 0 0 0 L1MB5_dup4050|chr9:96398551-96399390:+|1.887653887837116|0.0407056258440142|5.54|151.0|34|1|anti-sense L1MB5_dup4050|chr9:96398551-96399390:+|1.887653887837116|0.0407056258440142|5.54|151.0|34|1|anti-sense L1MB5_dup4050|chr9:96398551-96399390:+|1.887653887837116|0.0407056258440142|5.54|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 555.756103515625 2 555.790184 1109.56581 NaN NaN NaN NaN NaN NaN NaN 53.475 1 57.003 56.503 57.503 3.5278 0 0 0 0.40625 1 11984 11984 2.3027 0.21673 1 33513 10618 21353 21364 38450 38450 0.015414665427442742 QNFHNNKY 8 Unmodified _QNFHNNKY_ 0 0 0 REV__L1MB3_dup2044|chr2:99631337-99632008:-|1.1890533281042428|0.0587119781279337|4.34|150.0|39|3|anti-sense REV__L1MB3_dup2044|chr2:99631337-99632008:-|1.1890533281042428|0.0587119781279337|4.34|150.0|39|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 533.27197265625 2 532.749047 1063.48354 0.18079 9.6315E-05 -1.1889 -0.0006334 -1.0081 -0.00053708 532.7481952550353 48.805 0.43566 52.487 52.3 52.735 3.6819 48 28 2 0 0 0 0.72333 1 10580 10580 9.3474 1.4373 1 54878 + 33514 25861 21354 21365 38451 38451 -0.04566055536179192 QNFIYFVW 8 Unmodified _QNFIYFVW_ 0 0 0 L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|52|1|anti-sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|52|1|anti-sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_3 7 558.7792358398438 2 558.779285 1115.54402 NaN NaN NaN NaN NaN NaN NaN 29.934 1 33.662 33.162 34.162 3.7286 0 0 0 0.40746 1 4257 4257 0.69038 0 1 33515 8672 21355 21366 38452 38452 -0.00913338205805303 QNFLYILF 8 Unmodified _QNFLYILF_ 0 0 0 REV__L1MC3_dup10362|chr14:75162293-75162951:+|1.1948549545656404|0.0124326220909815|6.59|151.0|37|1|anti-sense REV__L1MC3_dup10362|chr14:75162293-75162951:+|1.1948549545656404|0.0124326220909815|6.59|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 529.281494140625 2 529.289485 1056.56442 NaN NaN NaN NaN NaN NaN NaN 65.797 1 65.797 65.297 66.297 0 0 0 0 0.40625 1 14891 14891 2.3027 0 1 + 33516 26703 21356 21367 38453 38453 0.038398324539684836 QNGRKKIV 8 Unmodified _QNGRKKIV_ 0 0 0 L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|109|3|sense L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|109|3|sense L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|109|3|sense MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 35.708 1 38.962 38.462 39.462 3.2547 0 0 0 0.40746 1 6646 6646 0.69038 0 1 33517 11016 21357 21368 38454 38454 0.1039228863688777 QNHLLKGLSFL 11 Unmodified _QNHLLKGLSFL_ 0 0 0 L1MC_dup1035|chr2:159656718-159658343:-|1.0369385696176323|0.0165539388385304|5.97|151.0|64|1|anti-sense L1MC_dup1035|chr2:159656718-159658343:-|1.0369385696176323|0.0165539388385304|5.97|151.0|64|1|anti-sense L1MC_dup1035|chr2:159656718-159658343:-|1.0369385696176323|0.0165539388385304|5.97|151.0|64|1|anti-sense MSMS UPN46_class_I_Rep_3 1 635.3834838867188 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 105.46 1 105.46 104.96 105.96 0 0 0 0 0.38417 1 25727 25727 1.3295 0.80477 1 33518 11047 21358 21369 38455 38455 0.10049340731166012 QNIFFMSKV 9 Unmodified _QNIFFMSKV_ 0 0 0 ENSG00000196136|ENST00000393078|SERPINA3 ENSG00000196136|ENST00000393078|SERPINA3 ENSG00000196136|ENST00000393078|SERPINA3 MSMS UPN48_class_I_Rep_1 5 557.2926025390625 2 557.291702 1112.56885 NaN NaN NaN NaN NaN NaN NaN 59.194 1 62.674 62.174 63.174 3.4801 0 0 0 0.39036 1 12985 12985 2.9952 0 1 33519 5283 21359 21370 38456 38456 0.01706973605246276 QNIHSILFF 9 Unmodified _QNIHSILFF_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|450|3|anti-sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|450|3|anti-sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|450|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.8035888671875 2 559.803291 1117.59203 0.49889 0.00027928 -1.0052 -0.0005627 -0.50627 -0.00028341 559.8025804162951 68.908 0.76141 72.416 71.909 72.671 3.5083 96 57 2 0 0 0 0.1249 1 15906 15906 29.082 0 1 146530 33520 15333 21360 21371 38457 38457 0.03793735714225477 QNILYPQLP 9 Unmodified _QNILYPQLP_ 0 0 0 REV__L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|29|2|anti-sense REV__L1MEf_dup661|chr1:212053800-212054499:-|1.1220913504062984|0.0055099965161945|7.67|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 543.3006591796875 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 54.266 1 57.452 56.952 57.952 3.1856 0 0 0 0.39518 1 12308 12308 1.8442 0.19162 1 + 33521 28674 21361 21372 38458 38458 0.05278315994382865 QNKFKKYP 8 Unmodified _QNKFKKYP_ 0 0 0 REV__AluJb_dup100426|chr16:11904805-11905084:+|1.068494137630593|0.1212955345341459|3.14|151.0|3|1|sense REV__AluJb_dup100426|chr16:11904805-11905084:+|1.068494137630593|0.1212955345341459|3.14|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 526.7974243164062 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 22.107 1 25.753 25.253 26.253 3.6459 0 0 0 0.40746 1 2204 2204 0.69038 0 1 + 33522 16909 21362 21373 38459 38459 0.05773753059793307 QNKFLVHD 8 Unmodified _QNKFLVHD_ 0 0 0 REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|3|1|sense REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 500.7659606933594 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 43.568 1 46.81 46.31 47.31 3.2419 0 0 0 0.40625 1 9052 9052 2.3027 0.24298 1 + 33523 27120 21363 21374 38460 38460 0.014003031290030776 QNKHLHKK 8 Unmodified _QNKHLHKK_ 0 0 0 REV__L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|3|1|sense REV__L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 516.80517578125 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 101.94 1 101.94 101.44 102.44 0 0 0 0 0.40746 1 24876 24876 0.69038 0 1 + 33524 24033 21364 21375 38461 38461 0.08431093385456734 QNKKKKKP 8 Unmodified _QNKKKKKP_ 0 0 0 REV__L1ME1_dup22479|chr12:57357478-57357972:-|1.6832170223268723|0.0216499838851149|6.28|151.0|18|3|sense REV__L1ME1_dup22479|chr12:57357478-57357972:-|1.6832170223268723|0.0216499838851149|6.28|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.82672119140625 2 499.827101 997.639649 -0.17356 -8.6752E-05 -0.10221 -5.109E-05 -0.27578 -0.00013784 499.8269581534078 16.239 1.3851 19.625 19.33 20.715 3.3864 332 166 3 0 0 0 0.82752 1 1071 1071 4.756 0 1 196790 + 33525 27679 21365 21376 38462 38462 0.1407343470508522 QNKKNVSKWN 10 Unmodified _QNKKNVSKWN_ 0 0 0 REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|4|1|sense REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 415.89544677734375 3 415.894799 1244.66257 -0.13706 -5.7003E-05 -0.036455 -1.5161E-05 -0.17352 -7.2165E-05 416.2287086661677 96.816 0.316 100.42 100.25 100.56 3.6088 49 32 2 0 0 0 0.56333 1 23345 23345 0.62683 0 1 474600 + 33526 24585 21366 21377 38463 38463 0.05002409031908428 QNKKRVLL 8 Unmodified _QNKKRVLL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN47_class_I_Rep_1 2 499.8269348144531 2 499.827101 997.639649 -0.31889 -0.00015939 0.066733 3.3355E-05 -0.25215 -0.00012603 499.82706882424884 15.956 0.91428 19.453 19.289 20.203 3.4968 268 108 4 0 0 0 0.82752 1 940 940 8.5933 3.8373 1 447510 33527 3252 21367 21378 38464 38464 0.14073434705096588 QNKKRVLL 8 Unmodified _QNKKRVLL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MSMS UPN47_class_I_Rep_1 2 499.827880859375 2 499.827101 997.639649 NaN NaN NaN NaN NaN NaN NaN 71.466 1 74.841 74.341 75.341 3.3751 0 0 0 0.40746 1 17427 17427 0.69038 0 1 33528 3252 21367 21378 38465 38465 0.14073434705096588 QNKKRVLL 8 Unmodified _QNKKRVLL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN47_class_I_Rep_3 4 499.8269348144531 2 499.827101 997.639649 -0.60062 -0.00030021 0.27201 0.00013596 -0.32861 -0.00016425 499.8271123082513 16.461 1.1919 19.823 19.461 20.653 3.3619 271 138 2 0 0 0 0.82752 2 1069 1069;1098 7.9102 0 1 123650 33529 3252 21367 21378 38466;38467 38466 0.14073434705096588 QNKLKGSR 8 Unmodified _QNKLKGSR_ 0 0 0 L1MDa_dup638|chr2:87609028-87610835:+|1.2335513220373229|0.0254736515307267|5.6|151.0|50|3|sense L1MDa_dup638|chr2:87609028-87610835:+|1.2335513220373229|0.0254736515307267|5.6|151.0|50|3|sense L1MDa_dup638|chr2:87609028-87610835:+|1.2335513220373229|0.0254736515307267|5.6|151.0|50|3|sense MSMS UPN48_class_I_Rep_1 5 465.77728271484375 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 72.869 1 76.343 75.843 76.843 3.4732 0 0 0 0.40643 1 17133 17133 2.0598 0 1 33530 12148 21368 21379 38468 38468 0.07307411740180214 QNKLQAKK 8 Unmodified _QNKLQAKK_ 0 0 0 REV__L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|9|1|sense REV__L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 479.2942199707031 2 479.295633 956.576714 0.26471 0.00012687 -0.89653 -0.00042971 -0.63183 -0.00030283 479.2950797615185 97.709 0.23917 97.709 97.499 97.738 0 41 28 2 0 0 0 0.72333 1 23768 23768 2.5775 0 1 208660 + 33531 25862 21369 21380 38469 38469 0.0966886891702643 QNKLQAKK 8 Unmodified _QNKLQAKK_ 0 0 0 REV__L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|9|1|sense REV__L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|9|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 479.295633 956.576714 0.35403 0.00016969 -0.19878 -9.5273E-05 0.15526 7.4414E-05 479.29539123940503 94.173 0.3779 97.645 97.351 97.728 3.472 0.049777 -0.00012038 NaN 2.5775 66 53 2 NaN NaN NaN NaN 0 NaN NaN 0 89114 + 33532 25862 21369 21380 0.0966886891702643 QNKLQAKK 8 Unmodified _QNKLQAKK_ 0 0 0 REV__L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|9|1|sense REV__L1MB3_dup2167|chr2:113905481-113907033:-|2.100351400723156|0.0204119713712248|6.69|151.0|9|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 479.295633 956.576714 0.22475 0.00010772 0.13583 6.5105E-05 0.36058 0.00017283 479.29535936494705 93.748 0.40243 97.64 97.463 97.865 3.8914 0.044303 0.00020038 NaN 2.5775 90 53 2 NaN NaN NaN NaN 0 NaN NaN 0 118590 + 33533 25862 21369 21380 0.0966886891702643 QNKMMWIEQ 9 Unmodified _QNKMMWIEQ_ 0 0 0 REV__ENSG00000226650|ENST00000435029|KIF4B REV__ENSG00000226650|ENST00000435029|KIF4B MSMS UPN47_class_I_Rep_2 3 604.2836303710938 2 604.283551 1206.55255 NaN NaN NaN NaN NaN NaN NaN 24.822 1 28.305 27.805 28.805 3.483 0 0 0 0.40038 1 3352 3352 0.6015 0 1 + 33534 21293 21370 21381 38470 38470 -0.04246475623176593 QNKPNEICIR 10 Unmodified _QNKPNEICIR_ 0 0 0 L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 607.802490234375 2 607.819147 1213.62374 0.43041 0.00026161 2.1456 0.0013041 2.576 0.0015657 607.8203837970293 43.345 0.066391 46.855 46.812 46.878 3.5103 5 4 2 0 0 0 0.56078 1 8118 8118 3.2813 0.28607 1 48480 33535 9166 21371 21382 38471 38471 0.025473604058333876 QNKPNEICIR 10 Unmodified _QNKPNEICIR_ 0 0 0 L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 607.8016967773438 2 607.819147 1213.62374 NaN NaN NaN NaN NaN NaN NaN 42.548 1 46.056 45.556 46.556 3.5079 0 0 0 0.53105 1 7882 7882 3.2813 0.28607 1 33536 9166 21371 21382 38472 38472 0.025473604058333876 QNKPNEICIR 10 Unmodified _QNKPNEICIR_ 0 0 0 L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense L1M5_dup41062|chr13:28242699-28243247:-|1.996293155831415|0.0204288303449791|6.61|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 607.801513671875 2 607.819147 1213.62374 NaN NaN NaN NaN NaN NaN NaN 43.116 1 46.757 46.257 47.257 3.6415 0 0 0 0.53105 1 7985 7985 6.2058 0.47393 1 33537 9166 21371 21382 38473 38473 0.025473604058333876 QNKRIKVI 8 Unmodified _QNKRIKVI_ 0 0 0 REV__L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|10|1|sense REV__L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.826904296875 2 499.827101 997.639649 -0.60062 -0.00030021 0.27201 0.00013596 -0.32861 -0.00016425 499.8271123082513 16.461 1.1919 19.823 19.461 20.653 3.3619 271 138 2 0 0 0 0.82752 1 1130 1130 2.3027 0 1 123650 + 33538 27781 21372 21383 38474 38474 0.14073434705096588 QNKRKYLQS 9 Unmodified _QNKRKYLQS_ 0 0 0 L1PA16_dup9062|chrX:149519921-149521829:+|1.362170753636477|0.4710387303308687|1.53|151.0|12|1|sense L1PA16_dup9062|chrX:149519921-149521829:+|1.362170753636477|0.4710387303308687|1.53|151.0|12|1|sense L1PA16_dup9062|chrX:149519921-149521829:+|1.362170753636477|0.4710387303308687|1.53|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 583.3148803710938 2 582.827829 1163.64111 NaN NaN NaN NaN NaN NaN NaN 39.857 1 39.857 39.357 40.357 0 0 0 0 0.39518 1 7693 7693 1.8442 0 1 33539 14131 21373 21384 38475 38475 0.06583024003180071 QNKTSKYTK 9 Unmodified _QNKTSKYTK_ 0 0 0 L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.2998046875 2 549.301113 1096.58767 0.539 0.00029607 -0.048965 -2.6897E-05 0.49003 0.00026918 549.3010348853333 100.29 0.10803 104.08 104.04 104.15 3.7942 19 14 2 0 0 0 0.49187 1 24810 24810 1.4819 0 1 120500 33540 15362 21374 21385 38476 38476 0.04324226500648365 QNLKTRLN 8 Unmodified _QNLKTRLN_ 0 0 0 HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|29|2|sense HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|29|2|sense HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 493.8284912109375 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 114.13 1 117.79 117.29 118.29 3.663 0 0 0 0.40746 1 27263 27263 0.69038 0 1 33541 8007 21375 21386 38477 38477 0.07351680911642688 QNLLYKATV 9 Unmodified _QNLLYKATV_ 0 0 0 L1M4_dup19698|chr20:3939292-3939959:-|2.3128077691679074|0.1422256238274879|4.02|151.0|10|2|sense L1M4_dup19698|chr20:3939292-3939959:-|2.3128077691679074|0.1422256238274879|4.02|151.0|10|2|sense L1M4_dup19698|chr20:3939292-3939959:-|2.3128077691679074|0.1422256238274879|4.02|151.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 525.3033447265625 2 525.303124 1048.5917 0.27395 0.00014391 0.057321 3.0111E-05 0.33127 0.00017402 525.3031093841415 66.5 0.070129 66.5 66.479 66.549 0 9 6 2 0 0 0 0.43153 1 15095 15095 6.2058 2.2614 1 60282 33542 8879 21376 21387 38478 38478 0.06934315994340068 QNLNERSM 8 Unmodified _QNLNERSM_ 0 0 0 REV__L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|18|2|sense REV__L1MC4a_dup7456|chr12:124441082-124442129:+|1.675378380399535|0.0572232534274428|4.87|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 496.2349853515625 2 496.234916 990.455278 NaN NaN NaN NaN NaN NaN NaN 31.184 1 34.484 33.984 34.984 3.2991 0 0 0 0.40643 1 5280 5280 2.0598 0 1 + 33543 27017 21377 21388 38479 38479 -0.04033121507779924 QNLQKLKDQ 9 Unmodified _QNLQKLKDQ_ 0 0 0 REV__ENSG00000105576|ENST00000425528|TNPO2 REV__ENSG00000105576|ENST00000425528|TNPO2 MSMS UPN48_class_I_Rep_1 5 557.814453125 2 557.814387 1113.61422 NaN NaN NaN NaN NaN NaN NaN 100.25 1 103.86 103.36 104.36 3.6084 0 0 0 0.3967 1 24215 24215 1.4819 0 1 + 33544 18295 21378 21389 38480 38480 0.061959153919815435 QNLVHLYL 8 Unmodified _QNLVHLYL_ 0 0 0 L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|213|1|anti-sense;L1HS_dup788|chr7:70197329-70203357:+|1.86074791699239|0.0201084658024881|6.53|151.0|331|3|anti-sense;L1HS_dup553|chr5:34147846-34154031:+|1.0296686266490696|0.0435786701224414|4.56|151.0|349|3|anti-sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|277|2|anti-sense;L1HS_dup376|chr4:15841547-15847572:+|1.8202285231742168|0.0469956216193236|5.28|151.0|262|2|anti-sense;L1HS_dup337|chr3:136479057-136485103:-|3.798017878111875|0.0957321270475341|5.31|151.0|213|1|anti-sense;L1HS_dup191|chr2:148188746-148194773:+|2.1724550004371306|0.0498513486414125|5.45|151.0|208|1|anti-sense;L1HS_dup1444|chr16:18821267-18827058:-|1.0693674233678694|0.2327118987400905|2.2|143.0|206|1|anti-sense;L1HS_dup1374|chr14:30684810-30690837:-|1.2268582469020992|0.1603142714844668|2.94|151.0|196|1|anti-sense L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|213|1|anti-sense L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|213|1|anti-sense MSMS UPN47_class_I_Rep_1 2 500.2826232910156 2 500.284734 998.554916 NaN NaN NaN NaN NaN NaN NaN 34.848 1 38.534 38.034 39.034 3.6859 0 0 0 0.40581 1 6322 6322 2.8892 0 1 33545 8473 21379 21390 38481 38481 0.05558064168462806 QNLVKIKG 8 Unmodified _QNLVKIKG_ 0 0 0 REV__ENST00000463719.1_1_3:195298097-195306332:-|nuORF REV__ENST00000463719.1_1_3:195298097-195306332:-|nuORF MSMS UPN47_class_I_Rep_3 4 450.2851867675781 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 65.413 1 68.593 68.093 69.093 3.1795 0 0 0 0.40746 1 15708 15708 0.69038 0 1 + 33546 20997 21380 21391 38482 38482 0.10666368031081674 QNLVLRLHFV 10 Unmodified _QNLVLRLHFV_ 0 0 0 REV__ENSG00000163810|ENST00000296125|TGM4 REV__ENSG00000163810|ENST00000296125|TGM4 MSMS UPN47_class_I_Rep_1 2 619.8699340820312 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 87.591 1 91.229 90.729 91.729 3.6372 0 0 0 0.53105 1 21891 21891 3.5965 0 1 + 33547 20007 21381 21392 38483 38483 0.12017064313636183 QNMQSYSKQK 10 Unmodified _QNMQSYSKQK_ 0 0 0 L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|186|3|sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|186|3|sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|186|3|sense MSMS UPN47_class_I_Rep_3 4 621.3013916015625 2 621.300787 1240.58702 NaN NaN NaN NaN NaN NaN NaN 110.81 1 114.34 113.84 114.84 3.529 0 0 0 0.53105 1 27187 27187 1.4819 0 1 33548 9283 21382 21393 38484 38484 -0.023649362107107663 QNPKEQKVL 9 Unmodified _QNPKEQKVL_ 0 0 0 nc|ENSG00000254769|Q8NGN8|OR4A4P;ENSG00000237388|ENST00000446524|OR4A47 nc|ENSG00000254769|Q8NGN8|OR4A4P nc|ENSG00000254769|Q8NGN8|OR4A4P MSMS UPN47_class_I_Rep_1 2 542.3133544921875 2 542.31148 1082.60841 NaN NaN NaN NaN NaN NaN NaN 63.755 1 67.111 66.611 67.611 3.3557 0 0 0 0.38916 1 15105 15105 3.2813 0.78282 1 33549 5691 21383 21394 38485 38485 0.07040816880339662 QNPKEQKVL 9 Unmodified _QNPKEQKVL_ 0 0 0 nc|ENSG00000254769|Q8NGN8|OR4A4P;ENSG00000237388|ENST00000446524|OR4A47 nc|ENSG00000254769|Q8NGN8|OR4A4P nc|ENSG00000254769|Q8NGN8|OR4A4P MSMS UPN47_class_I_Rep_1 2 542.3138427734375 2 542.31148 1082.60841 NaN NaN NaN NaN NaN NaN NaN 64.191 1 67.547 67.047 68.047 3.3557 0 0 0 0.31276 1 15238 15238 10.074 0 1 33550 5691 21383 21394 38486 38486 0.07040816880339662 QNPPPYHHHH 10 Unmodified _QNPPPYHHHH_ 0 0 0 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 MSMS UPN48_class_I_Rep_1 5 421.8621520996094 3 421.863722 1262.56934 NaN NaN NaN NaN NaN NaN NaN 19.133 1 22.671 22.171 23.171 3.5378 0 0 0 0.53105 1 1398 1398 0.15932 0.01943 1 33551 3369 21384 21395 38487 38487 -0.051444706306938315 QNPWKVPAL 9 Unmodified _QNPWKVPAL_ 0 0 0 HAL1_dup4583|chr3:58377661-58378426:+|1.372199568527206|0.01575956614748|6.44|151.0|20|3|sense HAL1_dup4583|chr3:58377661-58378426:+|1.372199568527206|0.01575956614748|6.44|151.0|20|3|sense HAL1_dup4583|chr3:58377661-58378426:+|1.372199568527206|0.01575956614748|6.44|151.0|20|3|sense MSMS UPN48_class_I_Rep_3 7 526.7970581054688 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.385 1 24.052 23.552 24.552 3.6667 0 0 0 0.39518 1 1724 1724 1.8442 0.36234 1 33552 7892 21385 21396 38488 38488 0.05773753059793307 QNQKPQNTR 9 Unmodified _QNQKPQNTR_ 0 0 0 REV__nc|ENSG00000102974|P49711-2|CTCF REV__nc|ENSG00000102974|P49711-2|CTCF MSMS UPN48_class_I_Rep_2 6 557.6397705078125 2 557.291611 1112.56867 NaN NaN NaN NaN NaN NaN NaN 51.143 1 54.811 54.311 55.311 3.6679 0 0 0 0.39598 1 10512 10512 1.6526 0 1 + 33553 18209 21386 21397 38489 38489 0.01688689929596876 QNQKRLDQ 8 Unmodified _QNQKRLDQ_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|43|1|sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|43|1|sense MSMS UPN48_class_I_Rep_2 6 515.2734985351562 2 515.275429 1028.53631 NaN NaN NaN NaN NaN NaN NaN 34.102 1 37.763 37.263 38.263 3.6607 0 0 0 0.40643 1 5460 5460 2.0598 0.21551 1 + 33554 28950 21387 21398 38490 38490 0.023179025266244935 QNQKSNSRY 9 Unmodified _QNQKSNSRY_ 0 0 0 REV__L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|33|2|sense REV__L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.278076171875 2 562.775793 1123.53703 -0.063535 -3.5756E-05 1.675 0.00094263 1.6114 0.00090687 562.7766310742016 29.312 0.34827 33.07 32.972 33.32 3.7578 33 26 2 0 0 0 0.47197 1 4698 4698 3.5965 0.60125 1 76877 + 33555 30234 21388 21399 38491 38491 -0.01979302824338447 QNQRWTKK 8 Unmodified _QNQRWTKK_ 0 0 0 REV__nc|ENSG00000101977|P10911-6|MCF2 REV__nc|ENSG00000101977|P10911-6|MCF2 MSMS UPN46_class_I_Rep_3 1 544.802734375 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 32.098 1 32.098 31.598 32.598 0 0 0 0 0.40746 1 5449 5449 0.69038 0 1 + 33556 31951 21389 21400 38492 38492 0.04838485660229708 QNQTCATAY 9 Unmodified _QNQTCATAY_ 0 0 0 REV__L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|53|3|sense REV__L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|53|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.2136535644531 2 500.213649 998.412745 -0.087125 -4.3581E-05 -0.034059 -1.7037E-05 -0.12118 -6.0618E-05 500.213625846066 23.756 0.47491 23.756 23.651 24.126 0 89 49 2 0 0 0 0.35081 2 3065 3065;3103 10.824 0.75 1 119430 + 33557 25275 21390 21401 38493;38494 38493 -0.08652516636027485 QNRLPEIK 8 Unmodified _QNRLPEIK_ 0 0 0 REV__L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|4|1|sense REV__L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 499.2925720214844 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 88.323 1 92.134 91.634 92.634 3.8104 0 0 0 0.40738 1 20963 20963 0.79363 0 1 + 33558 24241 21391 21402 38495 38495 0.07320565054408235 QNRRVKWV 8 Unmodified _QNRRVKWV_ 0 0 0 REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF REV__ENST00000395442.5_1_10:55568369-55568990:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.3192749023438 2 543.319974 1084.6254 NaN NaN NaN NaN NaN NaN NaN 113.66 1 117.32 116.82 117.82 3.663 0 0 0 0.40746 1 27133 27133 0.69038 0 1 + 33559 22115 21392 21403 38496 38496 0.08646782276787235 QNRSCSCC 8 Unmodified _QNRSCSCC_ 0 0 0 REV__LTR33B_dup727|chr7:37705843-37706243:-|1.0773105613084286|0.0088168638782987|6.93|150.0|14|1|anti-sense REV__LTR33B_dup727|chr7:37705843-37706243:-|1.0773105613084286|0.0088168638782987|6.93|150.0|14|1|anti-sense MSMS UPN48_class_I_Rep_2 6 450.6600646972656 2 450.659672 899.304791 NaN NaN NaN NaN NaN NaN NaN 59.581 1 63.068 62.568 63.568 3.4868 0 0 0 0.40738 1 13083 13083 0.79363 0 1 + 33560 30905 21393 21404 38497 38497 -0.14888927762603998 QNRTKKLS 8 Unmodified _QNRTKKLS_ 0 0 0 Charlie1a_dup4316|chr12:120818695-120820077:-|2.462298528769014|0.028389613285366|6.44|151.0|92|3|anti-sense Charlie1a_dup4316|chr12:120818695-120820077:-|2.462298528769014|0.028389613285366|6.44|151.0|92|3|anti-sense Charlie1a_dup4316|chr12:120818695-120820077:-|2.462298528769014|0.028389613285366|6.44|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.79095458984375 2 487.790715 973.566878 0.24983 0.00012187 0.12592 6.1423E-05 0.37575 0.00018329 487.79067889739224 76.166 0.32142 79.767 79.633 79.954 3.6011 61 43 2 0 0 0 0.82752 1 17958 17958 0.79363 0.79363 1 102730 33561 473 21394 21405 38498 38498 0.07903680911670108 QNSYLKGYD 9 Unmodified _QNSYLKGYD_ 0 0 0 REV__L1MC5_dup7602|chr9:19358290-19359235:-|1.0884018238246682|0.1060939212848658|3.36|151.0|6|1|sense REV__L1MC5_dup7602|chr9:19358290-19359235:-|1.0884018238246682|0.1060939212848658|3.36|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 544.25537109375 2 544.256371 1086.49819 NaN NaN NaN NaN NaN NaN NaN 20.032 1 23.654 23.154 24.154 3.6215 0 0 0 0.39598 1 1626 1626 1.6526 0.96225 1 + 33562 27094 21395 21406 38499 38499 -0.04160028178716857 QNTQKNPI 8 Unmodified _QNTQKNPI_ 0 0 0 ENST00000466232.5_1_7:75472033-75510741:+|nuORF ENST00000466232.5_1_7:75472033-75510741:+|nuORF ENST00000466232.5_1_7:75472033-75510741:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.7533874511719 2 471.753798 941.493044 NaN NaN NaN NaN NaN NaN NaN 35.437 1 39.113 38.613 39.613 3.6762 0 0 0 0.40292 1 6498 6498 6.7232 0.51738 1 33563 6899 21396 21407 38500 38500 0.019957127493285043 QNTRVLLLY 9 Unmodified _QNTRVLLLY_ 0 0 0 REV__ERVL-E-int_dup7952|chr19:36167611-36168089:-|1.1339121460569557|0.0815005871512908|3.8|151.0|21|2|anti-sense REV__ERVL-E-int_dup7952|chr19:36167611-36168089:-|1.1339121460569557|0.0815005871512908|3.8|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.3296508789062 2 560.329673 1118.64479 0.32683 0.00018313 -1.0603 -0.00059411 -0.73347 -0.00041098 560.3285479408155 53.665 1.0477 57.193 56.811 57.858 3.5278 74 61 2 0 0 0 0.37599 1 12068 12068 9.3831 2.66 1 128290 + 33564 23296 21397 21408 38501 38501 0.09021693777049222 QNTYKCDRLYI 11 Unmodified _QNTYKCDRLYI_ 0 0 0 REV__LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|35|3|sense REV__LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.9122009277344 3 472.902855 1415.68673 0.32103 0.00015182 0.39264 0.00018568 0.71367 0.0003375 472.9027142743742 15.221 0.49668 18.874 18.685 19.182 3.6535 97 68 2 0 0 0 0.68024 1 623 623 0.50596 0 1 45444 + 33565 30819 21398 21409 38502 38502 -0.0044811859675064625 QNVIPPKI 8 Unmodified _QNVIPPKI_ 0 0 0 Cheshire_dup579|chr9:137633199-137633547:-|1.2896778372077298|0.0093998417324759|7.1|151.0|3|1|sense Cheshire_dup579|chr9:137633199-137633547:-|1.2896778372077298|0.0093998417324759|7.1|151.0|3|1|sense Cheshire_dup579|chr9:137633199-137633547:-|1.2896778372077298|0.0093998417324759|7.1|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 454.7799377441406 2 454.781828 907.549102 NaN NaN NaN NaN NaN NaN NaN 115.94 1 119.57 119.07 120.07 3.6282 0 0 0 0.40738 1 28219 28219 0.79363 0 1 33566 554 21399 21410 38503 38503 0.09162965656787492 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 478.4127197265625 3 478.975788 1433.90553 0.21716 0.00010402 -1.9267 -0.00092284 -1.7095 -0.00081882 478.9744944135461 48.544 0.18217 48.544 48.464 48.646 0 29 17 3 0 0 0 22.551 1 10113 10113 1.2148 0.76031 1 320590 33567 12815 21400 21411 38504 38504 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 479.2708740234375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 45.756 1 49 48.5 49.5 3.2441 0 0 0 0.38417 1 9725 9725 0.40827 0.31342 1 33568 12815 21400 21411 38505 38505 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 478.74554443359375 3 478.975788 1433.90553 -0.25323 -0.00012129 -1.6687 -0.00079925 -1.9219 -0.00092054 479.3094472491998 43.116 0.21204 46.358 46.176 46.388 3.2419 19 13 2 0 0 0 22.551 1 8902 8902 0.45452 0 1 63207 33569 12815 21400 21411 38506 38506 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 478.9747619628906 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 43.607 1 47.117 46.617 47.617 3.5103 0 0 0 0.38417 1 8203 8203 0.40827 0 1 33570 12815 21400 21411 38507 38507 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 478.97503662109375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 48.439 1 51.963 51.463 52.463 3.5239 0 0 0 0.38417 1 9682 9682 1.2148 0.76031 1 33571 12815 21400 21411 38508 38508 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 478.974365234375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 54.475 1 57.99 57.49 58.49 3.5143 0 0 0 0.38417 1 11538 11538 1.1098 0.65524 1 33572 12815 21400 21411 38509 38509 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 478.974853515625 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 57.414 1 60.908 60.408 61.408 3.4942 0 0 0 0.38417 1 12438 12438 1.1098 0.70149 1 33573 12815 21400 21411 38510 38510 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 478.9744567871094 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 59.601 1 63.081 62.581 63.581 3.4801 0 0 0 0.38417 1 13110 13110 0.40827 0.31342 1 33574 12815 21400 21411 38511 38511 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.97418212890625 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 41.746 1 45.497 44.997 45.997 3.7508 0 0 0 0.38417 1 7654 7654 0.40827 0 1 33575 12815 21400 21411 38512 38512 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.97406005859375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 41.92 1 45.678 45.178 46.178 3.7579 0 0 0 0.38417 1 7702 7702 0.40827 0 1 33576 12815 21400 21411 38513 38513 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.9747314453125 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 54.541 1 58.123 57.623 58.623 3.5817 0 0 0 0.38417 1 11538 11538 0.40827 0.041592 1 33577 12815 21400 21411 38514 38514 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.97503662109375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 54.693 1 58.275 57.775 58.775 3.5817 0 0 0 0.38417 1 11585 11585 0.40827 0 1 33578 12815 21400 21411 38515 38515 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.97454833984375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 56.905 1 60.439 59.939 60.939 3.5333 0 0 0 0.38417 1 12260 12260 0.40827 0.31342 1 33579 12815 21400 21411 38516 38516 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.9749755859375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 58.636 1 62.134 61.634 62.634 3.4987 0 0 0 0.38417 1 12789 12789 0.40827 0.31342 1 33580 12815 21400 21411 38517 38517 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 478.9749450683594 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 70.914 1 74.45 73.95 74.95 3.5359 0 0 0 0.38417 1 16516 16516 0.40827 0.31342 1 33581 12815 21400 21411 38518 38518 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 478.974365234375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 41.665 1 45.31 44.81 45.81 3.6458 0 0 0 0.38417 1 7552 7552 0.40827 0 1 33582 12815 21400 21411 38519 38519 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 478.974853515625 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 46.209 1 49.846 49.346 50.346 3.6369 0 0 0 0.38417 1 8935 8935 0.45452 0.35968 1 33583 12815 21400 21411 38520 38520 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 478.97491455078125 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 47.196 1 50.832 50.332 51.332 3.6363 0 0 0 0.38417 1 9239 9239 0.40827 0.31342 1 33584 12815 21400 21411 38521 38521 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 478.9747009277344 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 54.742 1 58.311 57.811 58.811 3.5694 0 0 0 0.38417 1 11538 11538 0.40827 0.31342 1 33585 12815 21400 21411 38522 38522 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 478.97491455078125 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 57.201 1 60.744 60.244 61.244 3.5427 0 0 0 0.38417 1 12283 12283 0.40827 0 1 33586 12815 21400 21411 38523 38523 0.20593698547577333 QNVKRLKRKHK 11 Unmodified _QNVKRLKRKHK_ 0 0 0 L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense L1ME3F_dup1657|chr5:178219007-178219452:+|3.134399934804481|0.3294834115944821|3.25|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.5610046386719 3 478.975788 1433.90553 0.14047 6.7282E-05 -2.2151 -0.001061 -2.0747 -0.00099372 479.3091019317528 46.028 0.13847 49.665 49.617 49.755 3.6369 15 11 2 0 0 0 22.551 1 8892 8892 0.45452 0.35968 1 67568 33587 12815 21400 21411 38524 38524 0.20593698547577333 QNVLVSRK 8 Unmodified _QNVLVSRK_ 0 0 0 REV__ENSG00000140807|ENST00000268459|NKD1 REV__ENSG00000140807|ENST00000268459|NKD1 MULTI-MSMS UPN47_class_I_Rep_1 2 472.2877502441406 2 472.287808 942.561064 -0.36006 -0.00017005 -0.019468 -9.1947E-06 -0.37952 -0.00017924 472.28785191040936 23.985 0.6953 27.715 27.456 28.151 3.7298 79 57 2 0 0 0 0.82752 1 3028 3028 2.0598 0.21551 1 77407 + 33588 19358 21401 21412 38525 38525 0.0874858239999412 QNVPLFLI 8 Unmodified _QNVPLFLI_ 0 0 0 REV__L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|275|2|anti-sense REV__L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|275|2|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7958679199219 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 91.006 1 94.632 94.132 95.132 3.626 0 0 0 0.40738 1 21870 21870 0.79363 0 1 + 33589 29813 21402 21413 38526 38526 0.08027849799555042 QNVRRVVQIFR 11 Unmodified _QNVRRVVQIFR_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1;ENSG00000182674|ENST00000523207|KCNB2 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MSMS UPN48_class_I_Rep_1 5 472.61810302734375 3 472.28451 1413.8317 0.086217 4.0719E-05 -2.0524 -0.00096931 -1.9662 -0.00092859 472.2833930533018 93.617 0.41106 97.238 97.078 97.489 3.6208 69 47 2 0 0 0 0.68024 1 22515 22515 0.50596 0 1 134810 33590 3799 21403 21414 38527 38527 0.14133730385242416 QNVRRVVQIFR 11 Unmodified _QNVRRVVQIFR_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1;ENSG00000182674|ENST00000523207|KCNB2 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-SECPEP UPN48_class_I_Rep_1 5 472.6181945800781 3 472.28451 1413.8317 0.08662 4.0909E-05 -1.8696 -0.00088297 -1.7829 -0.00084206 472.28341149238923 93.391 0.19649 97.015 96.891 97.088 3.624 46 22 4 0 0 0 22.551 1 22428 22428 0.50596 0 1 187360 33591 3799 21403 21414 38528 38528 0.14133730385242416 QNYKKRQR 8 Unmodified _QNYKKRQR_ 0 0 0 L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|100|3|sense;L1MA3_dup380|chr1:174486646-174488761:-|2.858716299699062|0.0340349631605582|6.39|151.0|44|2|sense L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|100|3|sense L1MA2_dup5762|chr12:28467050-28470945:+|1.229380512780164|0.058689096528831|4.39|151.0|100|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 560.7973022460938 2 560.820338 1119.62612 0.43692 0.00024504 -1.6551 -0.00092823 -1.2182 -0.00068319 561.3225557795387 66.857 0.080353 70.048 69.98 70.061 3.1914 9 6 2 0 0 0 0.72333 1 16134 16134 0.6015 0 1 45199 33592 9411 21404 21415 38529 38529 0.07109576925836336 QNYYRLYV 8 Unmodified _QNYYRLYV_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|7|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|8|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|2|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MSMS UPN48_class_I_Rep_3 7 559.7860717773438 2 559.785099 1117.55564 NaN NaN NaN NaN NaN NaN NaN 25.545 1 29.314 28.814 29.814 3.769 0 0 0 0.40625 1 3122 3122 2.3027 0.24298 1 33593 1018 21405 21416 38530 38530 0.0015685881751323905 QPAGKVNR 8 Unmodified _QPAGKVNR_ 0 0 0 REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|59|3|sense REV__L1MA8_dup284|chr1:108175862-108177882:+|1.645815737024782|0.0932455724519891|4.14|150.0|59|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.2510986328125 2 435.251226 868.487899 0.082074 3.5723E-05 -0.30103 -0.00013102 -0.21895 -9.5299E-05 435.25099516946403 83.473 0.76189 87.012 86.667 87.429 3.5386 242 88 3 0 0 0 0.82752 1 20888 20888 2.3027 0 1 776410 + 33594 25550 21406 21417 38531 38531 0.048394536773685104 QPAKARTK 8 Unmodified _QPAKARTK_ 0 0 0 REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 450.27490234375 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.031 1 76.596 76.096 77.096 3.5645 0 0 0 0.40643 1 17129 17129 2.0598 0.40713 1 + 33595 31433 21407 21418 38532 38532 0.08152313228515595 QPARLTKE 8 Unmodified _QPARLTKE_ 0 0 0 REV__ENST00000450050.6_1_9:132399402-132399723:-|nuORF REV__ENST00000450050.6_1_9:132399402-132399723:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.77154541015625 2 471.771991 941.529429 NaN NaN NaN NaN NaN NaN NaN 26.118 1 29.613 29.113 30.113 3.4945 0 0 0 0.40746 1 3730 3730 0.69038 0 1 + 33596 22381 21408 21419 38533 38533 0.056325896460293734 QPCQSVGR 8 Unmodified _QPCQSVGR_ 0 0 0 REV__L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|261|3|anti-sense REV__L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|261|3|anti-sense MSMS UPN48_class_I_Rep_1 5 437.7153625488281 2 437.713619 873.412685 NaN NaN NaN NaN NaN NaN NaN 96.8 1 100.41 99.909 100.91 3.6088 0 0 0 0.4044 1 23338 23338 4.756 0 1 + 33597 24966 21409 21420 38534 38534 -0.029084718453532332 QPDYAIEKKN 10 Unmodified _QPDYAIEKKN_ 0 0 0 THE1A-int_dup1044|chr11:43476500-43477395:-|4.437357514386326|0.1511656997135699|4.88|151.0|3|1|sense THE1A-int_dup1044|chr11:43476500-43477395:-|4.437357514386326|0.1511656997135699|4.88|151.0|3|1|sense THE1A-int_dup1044|chr11:43476500-43477395:-|4.437357514386326|0.1511656997135699|4.88|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 603.3109741210938 2 603.311677 1204.6088 NaN NaN NaN NaN NaN NaN NaN 71.415 1 74.705 74.205 75.205 3.2899 0 0 0 0.53105 1 17453 17453 2.7352 0 1 33598 32866 21410 21421 38535 38535 0.014681918094993307 QPEAEQDPKS 10 Unmodified _QPEAEQDPKS_ 0 0 0 REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3 REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3 MSMS UPN47_class_I_Rep_3 4 564.783203125 2 564.762017 1127.50948 NaN NaN NaN NaN NaN NaN NaN 39.076 1 42.314 41.814 42.814 3.238 0 0 0 0.53105 1 7679 7679 2.4985 0.21571 1 + 33599 17921 21411 21422 38536 38536 -0.04917250875246282 QPEAHLIHY 9 Unmodified _QPEAHLIHY_ 0 0 0 Tigger4_dup394|chr4:53979207-53980144:-|1.1491537652566357|0.4950639177977093|1.21|151.0|52|2|anti-sense Tigger4_dup394|chr4:53979207-53980144:-|1.1491537652566357|0.4950639177977093|1.21|151.0|52|2|anti-sense Tigger4_dup394|chr4:53979207-53980144:-|1.1491537652566357|0.4950639177977093|1.21|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.2696533203125 2 554.282723 1106.55089 NaN NaN NaN NaN NaN NaN NaN 74.221 1 77.614 77.114 78.114 3.3937 0 0 0 0.36505 1 18260 18260 7.2892 0.56607 1 33600 33423 21412 21423 38537 38537 0.001879746747590616 QPFFLRKLS 9 Unmodified _QPFFLRKLS_ 0 0 0 REV__L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|152|2|anti-sense REV__L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|152|2|anti-sense MSMS UPN48_class_I_Rep_3 7 568.3344116210938 2 568.334759 1134.65496 NaN NaN NaN NaN NaN NaN NaN 42.153 1 45.794 45.294 46.294 3.6415 0 0 0 0.39518 1 7693 7693 1.8442 0 1 + 33601 24832 21413 21424 38538 38538 0.09302301502270893 QPFKWPTP 8 Unmodified _QPFKWPTP_ 0 0 0 ENST00000342232.4_1_8:75149008-75149230:-|nuORF ENST00000342232.4_1_8:75149008-75149230:-|nuORF ENST00000342232.4_1_8:75149008-75149230:-|nuORF MSMS UPN47_class_I_Rep_2 3 500.7666931152344 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 33.757 1 37.197 36.697 37.697 3.4398 0 0 0 0.40625 1 6019 6019 2.3027 0 1 33602 6235 21414 21425 38539 38539 0.018023926227101583 QPFLLIKL 8 Unmodified _QPFLLIKL_ 0 0 0 REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.3166198730469 2 486.318046 970.621539 NaN NaN NaN NaN NaN NaN NaN 70.74 1 74.111 73.611 74.611 3.3713 0 0 0 0.40625 1 17208 17208 2.3027 0 1 + 33603 21948 21415 21426 38540 38540 0.13505299730354636 QPFLPQQI 8 Unmodified _QPFLPQQI_ 0 0 0 REV__L1M2_dup38|chr1:35527018-35528088:-|1.5805277098943746|0.1565369673041136|3.34|151.0|36|3|sense REV__L1M2_dup38|chr1:35527018-35528088:-|1.5805277098943746|0.1565369673041136|3.34|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 485.7563171386719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 39.917 1 43.288 42.788 43.788 3.3712 0 0 0 0.40604 1 7893 7893 2.5775 0 1 + 33604 24204 21416 21427 38541 38541 0.042383752771456784 QPGAAPEPERS 11 Unmodified _QPGAAPEPERS_ 0 0 0 REV__nc|ENSG00000163156|Q9BWG6-2|SCNM1 REV__nc|ENSG00000163156|Q9BWG6-2|SCNM1 MULTI-MSMS UPN47_class_I_Rep_3 4 570.2782592773438 2 569.778002 1137.54145 -0.38523 -0.00021949 -0.17354 -9.8882E-05 -0.55877 -0.00031838 569.777888539315 16.751 0.95618 20.113 19.825 20.782 3.3619 151 108 2 0 0 0 0.66059 2 1061 1061;1157 2.2828 2.2828 1 57850 + 33605 19966 21417 21428 38542;38543 38542 -0.02181838401429559 QPGAGRAR 8 Unmodified _QPGAGRAR_ 0 0 0 REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.7272033691406 2 406.727918 811.441283 0.064207 2.6115E-05 -0.24743 -0.00010064 -0.18323 -7.4523E-05 406.72773572898177 101.84 0.12263 101.84 101.74 101.87 0 23 14 2 0 0 0 0.82752 1 24840 24840 0.69038 0 1 94335 + 33606 21524 21418 21429 38544 38544 0.02802013846076079 QPGAGRAR 8 Unmodified _QPGAGRAR_ 0 0 0 REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.7278747558594 2 406.727918 811.441283 0.064286 2.6147E-05 -0.17867 -7.2669E-05 -0.11438 -4.6522E-05 406.7278062336277 101.91 0.094986 101.91 101.87 101.96 0 23 11 3 0 0 0 0.82752 1 24874 24874 0.69038 0 1 104110 + 33607 21524 21418 21429 38545 38545 0.02802013846076079 QPGAGRAR 8 Unmodified _QPGAGRAR_ 0 0 0 REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.7279052734375 2 406.727918 811.441283 0.094671 3.8505E-05 -0.25444 -0.00010349 -0.15977 -6.4981E-05 406.7277452415625 97.984 0.41653 101.77 101.55 101.96 3.7861 73 57 2 0 0 0 0.82752 1 24250 24250 0.69038 0 1 76949 + 33608 21524 21418 21429 38546 38546 0.02802013846076079 QPGAGRAR 8 Unmodified _QPGAGRAR_ 0 0 0 REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 406.727918 811.441283 0.064286 2.6147E-05 -0.17867 -7.2669E-05 -0.11438 -4.6522E-05 406.7278062336277 101.91 0.094986 101.91 101.87 101.96 0 0 0 NaN 0.69038 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 104110 + 33609 21524 21418 21429 0.02802013846076079 QPGAGRAR 8 Unmodified _QPGAGRAR_ 0 0 0 REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 406.727918 811.441283 0.094671 3.8505E-05 -0.25444 -0.00010349 -0.15977 -6.4981E-05 406.7277452415625 97.984 0.41653 101.77 101.55 101.96 3.7861 0.14946 -0.00023175 NaN 0.69038 73 57 2 NaN NaN NaN NaN 0 NaN NaN 0 76949 + 33610 21524 21418 21429 0.02802013846076079 QPGARGAR 8 Unmodified _QPGARGAR_ 0 0 0 ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF MSMS UPN47_class_I_Rep_3 4 406.7276916503906 2 406.727918 811.441283 NaN NaN NaN NaN NaN NaN NaN 98.092 1 101.51 101.01 102.01 3.4216 0 0 0 0.40746 1 24295 24295 0.69038 0 1 33611 6376 21419 21430 38547 38547 0.028020138460874477 QPGARGAR 8 Unmodified _QPGARGAR_ 0 0 0 ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.7280578613281 2 406.727918 811.441283 -0.14469 -5.8851E-05 0.121 4.9214E-05 -0.023695 -9.6374E-06 406.72789583864676 97.858 0.65114 101.46 101.14 101.79 3.6065 140 80 2 0 0 0 0.82752 2 23551 23551;23608 0.69038 0 1 207440 33612 6376 21419 21430 38548;38549 38548 0.028020138460874477 QPGARGAR 8 Unmodified _QPGARGAR_ 0 0 0 ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 406.72802734375 2 406.727918 811.441283 0.082146 3.3411E-05 0.12351 5.0237E-05 0.20566 8.3648E-05 406.72788316097194 97.674 0.63704 101.45 101.16 101.8 3.779 117 89 2 0 0 0 0.82752 3 23170 23170;23197;23223 0.69038 0 1 171480 33613 6376 21419 21430 38550;38551;38552 38550 0.028020138460874477 QPGARGAR 8 Unmodified _QPGARGAR_ 0 0 0 ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF ENST00000369838.5_1_6:80341105-80383359:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 406.72808837890625 2 406.727918 811.441283 0.096573 3.9279E-05 0.024176 9.8329E-06 0.12075 4.9112E-05 406.7278410706755 97.678 0.64117 101.58 101.24 101.88 3.9022 112 87 2 0 0 0 0.82752 1 23191 23191 0.69038 0 1 202470 33614 6376 21419 21430 38553 38553 0.028020138460874477 QPGKERKQN 9 Unmodified _QPGKERKQN_ 0 0 0 nc|ENSG00000163156|Q9BWG6-2|SCNM1;ENSG00000163156|ENST00000368905|SCNM1;ENST00000497147.1_1_1:151139275-151141558:+|nuORF;nc|ENSG00000163156|Q9BWG6-3|SCNM1;ENST00000461862.5_1_1:151138565-151139978:+|nuORF nc|ENSG00000163156|Q9BWG6-2|SCNM1 nc|ENSG00000163156|Q9BWG6-2|SCNM1 MSMS UPN46_class_I_Rep_3 1 542.7990112304688 2 542.796529 1083.5785 NaN NaN NaN NaN NaN NaN NaN 101.84 1 101.84 101.34 102.34 0 0 0 0 0.39518 1 24848 24848 1.8442 0.19162 1 33615 3986 21420 21431 38554 38554 0.04005877934991986 QPICMTLHW 9 Unmodified _QPICMTLHW_ 0 0 0 REV__L1MD1_dup6376|chr20:3976197-3976803:+|3.20805076379428|0.0170635802831451|7.55|151.0|21|1|anti-sense REV__L1MD1_dup6376|chr20:3976197-3976803:+|3.20805076379428|0.0170635802831451|7.55|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7612915039062 2 564.77008 1127.52561 NaN NaN NaN NaN NaN NaN NaN 114.53 1 118.01 117.51 118.51 3.4802 0 0 0 0.39518 1 28127 28127 1.8442 0.19162 1 + 33616 27372 21421 21432 38555 38555 -0.03305539443681482 QPIIHTEP 8 Unmodified _QPIIHTEP_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS UPN48_class_I_Rep_2 6 467.7530517578125 2 467.753267 933.491981 0.17529 8.1993E-05 -0.16103 -7.5324E-05 0.01426 6.6699E-06 467.7531012618153 50.43 0.84691 54.124 53.807 54.654 3.6946 125 50 3 0 0 0 0.82752 1 10238 10238 2.3027 0 1 830650 + 33617 20942 21422 21433 38556 38556 0.022574983804133808 QPIISLSVVP 10 Unmodified _QPIISLSVVP_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|452|3|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|452|3|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|452|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8215942382812 2 526.82115 1051.62775 0.018815 9.9121E-06 1.127 0.0005937 1.1458 0.00060362 526.8215892003612 27.568 0.15231 27.568 27.552 27.704 0 12 9 2 0 0 0 0.56033 1 4123 4123 3.5965 1.5367 1 462220 33618 7997 21423 21434 38557 38557 0.10399773171252491 QPIKKYKK 8 Unmodified _QPIKKYKK_ 0 0 0 REV__L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|37|3|sense REV__L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 516.7784423828125 2 516.831852 1031.64915 NaN NaN NaN NaN NaN NaN NaN 71.237 1 71.237 70.737 71.737 0 0 0 0 0.40746 1 16400 16400 0.69038 0 1 + 33619 29497 21424 21435 38558 38558 0.13459202990588892 QPKEASKRY 9 Unmodified _QPKEASKRY_ 0 0 0 REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 553.7485961914062 2 553.80128 1105.58801 -0.089624 -4.9634E-05 0.21764 0.00012053 0.12802 7.0895E-05 553.8016360513584 36.563 0.2299 39.81 39.628 39.858 3.247 16 14 2 0 0 0 0.12354 1 6879 6879 1.4819 0 1 43707 + 33620 17703 21425 21436 38559 38559 0.03943646220523078 QPKEKRPRHV 10 Unmodified _QPKEKRPRHV_ 0 0 0 REV__HERVIP10FH-int_dup365|chr19:57803911-57804541:-|1.3258350730775432|0.1385111935667479|3.26|151.0|11|2|sense REV__HERVIP10FH-int_dup365|chr19:57803911-57804541:-|1.3258350730775432|0.1385111935667479|3.26|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 637.872802734375 2 637.875645 1273.73674 NaN NaN NaN NaN NaN NaN NaN 98.221 1 101.83 101.33 102.33 3.6065 0 0 0 0.53105 1 23700 23700 1.1933 0.66858 1 + 33621 23742 21426 21437 38560 38560 0.11081796914072584 QPKERLVL 8 Unmodified _QPKERLVL_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK MSMS UPN47_class_I_Rep_2 3 491.80609130859375 2 491.805834 981.597115 NaN NaN NaN NaN NaN NaN NaN 30.495 1 33.977 33.477 34.477 3.4821 0 0 0 0.40659 1 5034 5034 1.8442 0 1 33622 4363 21427 21438 38561 38561 0.10558039576847023 QPKFLYVY 8 Unmodified _QPKFLYVY_ 0 0 0 REV__L1PA6_dup169|chr1:97357838-97363959:+|2.2685149498084263|0.1303794113036645|4.12|151.0|234|1|anti-sense REV__L1PA6_dup169|chr1:97357838-97363959:+|2.2685149498084263|0.1303794113036645|4.12|151.0|234|1|anti-sense MSMS UPN46_class_I_Rep_3 1 529.3038330078125 2 529.289485 1056.56442 NaN NaN NaN NaN NaN NaN NaN 72.761 1 72.761 72.261 73.261 0 0 0 0 0.40738 1 16834 16834 0.79363 0 1 + 33623 29846 21428 21439 38562 38562 0.03839832453991221 QPKIHGKQ 8 Unmodified _QPKIHGKQ_ 0 0 0 ENST00000477769.1_1_1:111662258-111663219:-|nuORF;ENSG00000156171|ENST00000484310|DRAM2 ENST00000477769.1_1_1:111662258-111663219:-|nuORF ENST00000477769.1_1_1:111662258-111663219:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 468.2742614746094 2 468.274701 934.534849 -0.37055 -0.00017352 -0.16735 -7.8368E-05 -0.53791 -0.00025189 468.2744940036795 13.138 0.59676 13.138 12.969 13.565 0 126 66 3 0 0 0 0.82752 1 288 288 7.9102 1.187 1 155340 33624 3724 21429 21440 38563 38563 0.06496313228524286 QPKKDTEV 8 Unmodified _QPKKDTEV_ 0 0 0 REV__nc|ENSG00000173575|O14647-2|CHD2 REV__nc|ENSG00000173575|O14647-2|CHD2 MULTI-SECPEP UPN47_class_I_Rep_3 4 472.75567626953125 2 472.756007 943.497461 -0.53597 -0.00025338 0.27616 0.00013056 -0.25981 -0.00012283 472.75605813869004 35.9 0.47556 39.155 38.93 39.406 3.2547 40 30 2 0 0 0 0.72333 1 6710 6710 3.9444 0 1 76991 + 33625 20490 21430 21441 38564 38564 0.023451771722420744 QPKKSVLY 8 Unmodified _QPKKSVLY_ 0 0 0 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 MSMS UPN48_class_I_Rep_2 6 481.8345031738281 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 113.53 1 117.19 116.69 117.69 3.663 0 0 0 0.40746 1 27101 27101 0.69038 0 1 + 33626 19555 21431 21442 38565 38565 0.07734948311235712 QPKRMRLR 8 Unmodified _QPKRMRLR_ 0 0 0 REV__ENST00000544803.5_1_2:176794774-176794831:-|nuORF REV__ENST00000544803.5_1_2:176794774-176794831:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 542.8316040039062 2 542.829652 1083.64475 0.51955 0.00028202 2.7639 0.0015003 3.2835 0.0017824 542.8312358815818 58.159 0.18516 61.646 61.549 61.734 3.487 11 8 2 0 0 0 0.82752 1 12675 12675 2.3027 0.4585 1 167980 + 33627 22931 21432 21443 38566 38566 0.10627415296039544 QPKVARKKK 9 Unmodified _QPKVARKKK_ 0 0 0 REV__L1MC1_dup12390|chr20:3334346-3334791:-|1.1525040553464632|0.0716956996128333|4.01|150.0|13|3|sense REV__L1MC1_dup12390|chr20:3334346-3334791:-|1.1525040553464632|0.0716956996128333|4.01|150.0|13|3|sense MSMS UPN48_class_I_Rep_1 5 541.7515869140625 2 541.861475 1081.7084 NaN NaN NaN NaN NaN NaN NaN 112.32 1 115.96 115.46 116.46 3.6321 0 0 0 0.4007 1 27253 27253 0.52476 0 1 + 33628 26519 21433 21444 38567 38567 0.17081099004803946 QPLDTLIV 8 Unmodified _QPLDTLIV_ 0 0 0 L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|157|1|anti-sense L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|157|1|anti-sense L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|157|1|anti-sense MSMS UPN48_class_I_Rep_1 5 449.7672119140625 2 449.765843 897.517133 NaN NaN NaN NaN NaN NaN NaN 74.678 1 78.168 77.668 78.668 3.49 0 0 0 0.40604 1 17656 17656 2.5775 0 1 33629 14826 21434 21445 38568 38568 0.06427553183016244 QPLEAGKGWE 10 Unmodified _QPLEAGKGWE_ 0 0 0 MLT1D_dup13792|chr11:75295247-75295707:-|1.222746642244923|0.0094879446776844|7.01|151.0|4|1|sense MLT1D_dup13792|chr11:75295247-75295707:-|1.222746642244923|0.0094879446776844|7.01|151.0|4|1|sense MLT1D_dup13792|chr11:75295247-75295707:-|1.222746642244923|0.0094879446776844|7.01|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 557.8165893554688 2 557.780013 1113.54547 0.23389 0.00013046 -0.23372 -0.00013036 0.00017202 9.595E-08 557.7798765294282 45.196 1.5715 48.44 48.057 49.629 3.2441 216 98 3 0 0 0 0.84575 1 9862 9862 9.3831 0 1 898000 33630 16331 21435 21446 38569 38569 -0.006757489077244827 QPLFIKIL 8 Unmodified _QPLFIKIL_ 0 0 0 L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|25|3|anti-sense L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|25|3|anti-sense L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_1 5 486.3166198730469 2 486.318046 970.621539 NaN NaN NaN NaN NaN NaN NaN 68.914 1 72.369 71.869 72.869 3.4548 0 0 0 0.40625 1 15947 15947 2.3027 0 1 33631 13397 21436 21447 38570 38570 0.13505299730354636 QPLFIKIL 8 Unmodified _QPLFIKIL_ 0 0 0 L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|25|3|anti-sense L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|25|3|anti-sense L1MEg_dup5401|chr6:2284853-2285142:+|2.087033753823752|0.0109556726753532|7.57|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_2 6 486.3162841796875 2 486.318046 970.621539 NaN NaN NaN NaN NaN NaN NaN 68.868 1 72.376 71.876 72.876 3.5083 0 0 0 0.40404 1 15913 15913 5.2307 0 1 33632 13397 21436 21447 38571 38571 0.13505299730354636 QPLKKEKPKW 10 Unmodified _QPLKKEKPKW_ 0 0 0 ENSG00000168246|ENST00000393792|UBTD2 ENSG00000168246|ENST00000393792|UBTD2 ENSG00000168246|ENST00000393792|UBTD2 MSMS UPN48_class_I_Rep_1 5 641.3855590820312 2 641.387522 1280.76049 NaN NaN NaN NaN NaN NaN NaN 94.537 1 98.158 97.658 98.658 3.6208 0 0 0 0.53105 1 22752 22752 1.4819 0.15237 1 33633 4360 21437 21448 38572 38572 0.131342176278622 QPLLREVL 8 Unmodified _QPLLREVL_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MULTI-MSMS UPN47_class_I_Rep_1 2 484.30023193359375 2 484.300384 966.586216 0.085496 4.1406E-05 0.030853 1.4942E-05 0.11635 5.6348E-05 484.300262921071 54.548 1.2675 58.05 57.622 58.89 3.5014 150 72 3 0 0 0 0.82752 7 12245 12245;12285;12329;12368;12406;12445;12486 27.629 7.1752 1 532120 33634 3833 21438 21449 38573;38574;38575;38576;38577;38578;38579 38573 0.10158637202562204 QPLLREVL 8 Unmodified _QPLLREVL_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MULTI-MSMS UPN47_class_I_Rep_2 3 484.30023193359375 2 484.300384 966.586216 0.29502 0.00014288 -0.23825 -0.00011539 0.056765 2.7491E-05 484.3001523691379 54.855 1.4558 58.174 57.714 59.17 3.3187 148 79 3 0 0 0 0.82752 5 12444 12404;12444;12500;12550;12614 29.082 3.6823 1 496110 33635 3833 21438 21449 38580;38581;38582;38583;38584 38581 0.10158637202562204 QPLLREVL 8 Unmodified _QPLLREVL_ 0 0 0 ENSG00000159377|ENST00000290541|PSMB4;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000159377|ENST00000290541|PSMB4 ENSG00000159377|ENST00000290541|PSMB4 MULTI-MSMS UPN47_class_I_Rep_3 4 484.3003234863281 2 484.300384 966.586216 0.12001 5.8123E-05 -0.021985 -1.0647E-05 0.09803 4.7476E-05 484.3002439934933 55.042 1.429 58.22 57.776 59.205 3.1779 178 86 3 0 0 0 0.82752 6 12533 12489;12533;12571;12610;12668;12706 18.146 6.5061 1 610840 33636 3833 21438 21449 38585;38586;38587;38588;38589;38590 38586 0.10158637202562204 QPLNVRAA 8 Unmodified _QPLNVRAA_ 0 0 0 ENSG00000262655|ENST00000576479|SPON1 ENSG00000262655|ENST00000576479|SPON1 ENSG00000262655|ENST00000576479|SPON1 MULTI-SECPEP UPN46_class_I_Rep_3 1 434.779541015625 2 434.753601 867.49265 0.09986 4.3415E-05 -2.0357 -0.00088503 -1.9358 -0.00084161 434.75214925928714 48.366 0.057537 48.366 48.325 48.382 0 5 3 2 0 0 0 0.72333 1 10072 10072 2.5775 0 1 66502 33637 5789 21439 21450 38591 38591 0.0536033782012737 QPLQEARKGKK 11 Unmodified _QPLQEARKGKK_ 0 0 0 MLT1D_dup15830|chr13:112796256-112796705:+|1.7258739020678646|0.0527375882778441|5.03|151.0|9|2|sense MLT1D_dup15830|chr13:112796256-112796705:+|1.7258739020678646|0.0527375882778441|5.03|151.0|9|2|sense MLT1D_dup15830|chr13:112796256-112796705:+|1.7258739020678646|0.0527375882778441|5.03|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 641.88330078125 2 641.883136 1281.75172 0.49684 0.00031892 -1.5321 -0.0009834 -1.0352 -0.00066449 641.8822059266437 87.047 0.17725 90.427 90.332 90.509 3.3801 29 22 2 0 0 0 0.65271 1 21812 21812 2.9952 1.5133 1 77357 33638 16339 21440 21451 38592 38592 0.12211243991373522 QPLQKKIQ 8 Unmodified _QPLQKKIQ_ 0 0 0 AluJo_dup29229|chr7:74365757-74366077:-|1.0473300568878885|0.0166754098205945|5.97|151.0|6|2|sense AluJo_dup29229|chr7:74365757-74366077:-|1.0473300568878885|0.0166754098205945|5.97|151.0|6|2|sense AluJo_dup29229|chr7:74365757-74366077:-|1.0473300568878885|0.0166754098205945|5.97|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 491.8060607910156 2 491.805834 981.597115 NaN NaN NaN NaN NaN NaN NaN 30.87 1 34.182 33.682 34.682 3.3116 0 0 0 0.40746 1 5186 5186 0.69038 0 1 33639 101 21441 21452 38593 38593 0.10558039576847023 QPLRIVLN 8 Unmodified _QPLRIVLN_ 0 0 0 REV__AluSg_dup29303|chr16:30241546-30241850:+|2.2325745585784227|0.1960473361526983|3.51|151.0|18|2|anti-sense REV__AluSg_dup29303|chr16:30241546-30241850:+|2.2325745585784227|0.1960473361526983|3.51|151.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.79620361328125 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 65.871 1 65.871 65.371 66.371 0 0 0 0 0.40746 1 14913 14913 0.69038 0 1 + 33640 17095 21442 21453 38594 38594 0.10882056922400807 QPLRIVLN 8 Unmodified _QPLRIVLN_ 0 0 0 REV__AluSg_dup29303|chr16:30241546-30241850:+|2.2325745585784227|0.1960473361526983|3.51|151.0|18|2|anti-sense REV__AluSg_dup29303|chr16:30241546-30241850:+|2.2325745585784227|0.1960473361526983|3.51|151.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.7997131347656 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 117.25 1 117.25 116.75 117.75 0 0 0 0 0.40746 1 29058 29058 0.69038 0 1 + 33641 17095 21442 21453 38595 38595 0.10882056922400807 QPLRIVLN 8 Unmodified _QPLRIVLN_ 0 0 0 REV__AluSg_dup29303|chr16:30241546-30241850:+|2.2325745585784227|0.1960473361526983|3.51|151.0|18|2|anti-sense REV__AluSg_dup29303|chr16:30241546-30241850:+|2.2325745585784227|0.1960473361526983|3.51|151.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.7995910644531 2 476.800552 951.58655 NaN NaN NaN NaN NaN NaN NaN 119.62 1 119.62 119.12 120.12 0 0 0 0 0.40746 1 29739 29739 0.69038 0 1 + 33642 17095 21442 21453 38596 38596 0.10882056922400807 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.7867126464844 2 493.78711 985.559667 0.30457 0.00015039 -1.0086 -0.00049804 -0.70405 -0.00034765 493.78643795309193 108.95 0.8518 108.95 108.79 109.64 0 112 62 3 0 0 0 0.41259 3 26684 26684;26747;26864 7.2892 2.5332 1 6311600 + 33643 26979 21443 21454 38597;38598;38599 38597 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.7865905761719 2 493.78711 985.559667 0.30429 0.00015026 -1.2075 -0.00059624 -0.90318 -0.00044598 493.78646273678254 109.73 0.21741 109.73 109.63 109.85 0 28 18 2 0 0 0 0.41259 1 26972 26972 7.2892 2.5332 1 1156200 + 33644 26979 21443 21454 38600 38600 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.7868347167969 2 493.78711 985.559667 0.27506 0.00013582 -0.75333 -0.00037198 -0.47827 -0.00023616 493.7865889954336 108.8 0.23465 112.43 112.27 112.5 3.6355 34 19 2 0 0 0 0.41259 2 26734 26734;26795 7.2892 0 1 11766000 + 33645 26979 21443 21454 38601;38602 38601 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.7864685058594 2 493.78711 985.559667 0.27503 0.00013581 -1.3542 -0.00066868 -1.0792 -0.00053287 493.78630686527407 109.08 0.15392 112.68 112.61 112.76 3.6046 16 8 3 0 0 0 0.41259 1 26856 26856 7.2892 0 1 2990100 + 33646 26979 21443 21454 38603 38603 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.78668212890625 2 493.78711 985.559667 0.27329 0.00013495 -0.79617 -0.00039314 -0.52288 -0.00025819 493.7865711933471 108.82 0.48751 112.36 112.17 112.66 3.5382 84 52 2 0 0 0 0.41259 2 26654 26654;26709 7.2892 0 1 9847200 + 33647 26979 21443 21454 38604;38605 38604 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.78656005859375 2 493.78711 985.559667 0.24757 0.00012225 -0.80065 -0.00039535 -0.55308 -0.00027311 493.78654591612695 108.78 0.44582 112.45 112.31 112.76 3.6751 75 48 3 0 0 0 0.41259 1 25749 25749 7.2892 0 1 10972000 + 33648 26979 21443 21454 38606 38606 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 493.78711 985.559667 0.27486 0.00013572 -1.1038 -0.00054506 -0.82897 -0.00040934 493.78644022309425 108.93 0.092743 112.54 112.45 112.54 3.6046 0.049414 -0.00023028 NaN 7.2892 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 12444000 + 33649 26979 21443 21454 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 493.78711 985.559667 0.46408 0.00022916 -0.78053 -0.00038542 -0.31645 -0.00015626 493.78658756005234 108.81 0.48148 112.35 112.17 112.65 3.5333 -0.049024 6.538E-05 NaN 7.2892 117 53 3 NaN NaN NaN NaN 0 NaN NaN 0 12079000 + 33650 26979 21443 21454 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 493.78711 985.559667 0.16542 8.1683E-05 -1.5256 -0.00075331 -1.3602 -0.00067162 493.78628993417783 109.27 0.045456 112.91 112.88 112.92 3.6321 0.11114 -6.4068E-05 NaN 7.2892 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 885720 + 33651 26979 21443 21454 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 493.78711 985.559667 0.16566 8.1802E-05 -0.94864 -0.00046842 -0.78297 -0.00038662 493.78652894240986 108.81 0.47581 112.44 112.25 112.73 3.6321 0.048257 -0.00010063 NaN 7.2892 95 54 2 NaN NaN NaN NaN 0 NaN NaN 0 12337000 + 33652 26979 21443 21454 0.06630948311226348 QPLVAVFNV 9 Unmodified _QPLVAVFNV_ 0 0 0 REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense REV__L1MC4a_dup3166|chr5:119311897-119312097:+|1.069132502466275|0.0062308257116051|7.42|151.0|9|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 493.78711 985.559667 0.27261 0.00013461 -0.91052 -0.0004496 -0.63791 -0.00031499 493.7865502541584 108.79 0.47468 112.47 112.29 112.76 3.6746 -0.018052 -3.9365E-05 NaN 7.2892 100 50 2 NaN NaN NaN NaN 0 NaN NaN 0 9019600 + 33653 26979 21443 21454 0.06630948311226348 QPLWAWYFP 9 Unmodified _QPLWAWYFP_ 0 0 0 REV__ENSG00000155252|ENST00000370631|PI4K2A REV__ENSG00000155252|ENST00000370631|PI4K2A MULTI-SECPEP UPN48_class_I_Rep_3 7 603.7979125976562 2 604.300384 1206.58622 0.46286 0.00027971 0.87418 0.00052827 1.337 0.00080798 604.3012434948951 43.487 0.081718 47.126 47.076 47.158 3.6385 6 5 2 0 0 0 0.12422 1 8090 8090 2.3027 0.24298 1 78609 + 33654 19761 21444 21455 38607 38607 -0.008813627974632254 QPLYKSVI 8 Unmodified _QPLYKSVI_ 0 0 0 REV__L1MC4_dup8993|chr6:38040570-38041621:-|1.4952667857637865|0.0086255342081473|7.44|151.0|5|1|sense REV__L1MC4_dup8993|chr6:38040570-38041621:-|1.4952667857637865|0.0086255342081473|7.44|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2823486328125 2 474.28166 946.548768 -0.076422 -3.6246E-05 1.9506 0.00092514 1.8742 0.00088889 474.2824955153626 26.952 0.15467 26.952 26.94 27.095 0 21 12 4 0 0 0 0.82752 1 3938 3938 2.3027 0 1 998190 + 33655 26953 21445 21456 38608 38608 0.07335545936962262 QPLYPQILY 9 Unmodified _QPLYPQILY_ 0 0 0 MER2_dup2169|chr3:197868148-197868482:+|1.0143685302307182|0.1046411824059585|3.28|151.0|4|2|sense MER2_dup2169|chr3:197868148-197868482:+|1.0143685302307182|0.1046411824059585|3.28|151.0|4|2|sense MER2_dup2169|chr3:197868148-197868482:+|1.0143685302307182|0.1046411824059585|3.28|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 567.8133544921875 2 567.813325 1133.6121 NaN NaN NaN NaN NaN NaN NaN 76.228 1 79.486 78.986 79.986 3.2573 0 0 0 0.39428 1 18944 18944 2.0598 0 1 33656 15821 21446 21457 38609 38609 0.05063486654194094 QPNQRHLS 8 Unmodified _QPNQRHLS_ 0 0 0 REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|11|1|sense REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.25811767578125 2 490.25704 978.499526 0.3564 0.00017473 2.2458 0.001101 2.6022 0.0012757 490.2580169065084 59.291 0.1492 62.564 62.5 62.649 3.2731 18 10 3 0 0 0 0.82752 1 13807 13807 4.756 0 1 45750 + 33657 24444 21447 21458 38610 38610 0.009416507007017572 QPNQRHLS 8 Unmodified _QPNQRHLS_ 0 0 0 REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|11|1|sense REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|11|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 490.3223571777344 2 490.25704 978.499526 0.3564 0.00017473 2.2458 0.001101 2.6022 0.0012757 490.2580169065084 59.291 0.1492 62.564 62.5 62.649 3.2731 18 10 3 0 0 0 0.72333 1 13777 13777 4.756 0 1 45750 + 33658 24444 21447 21458 38611 38611 0.009416507007017572 QPPFSVCILFS 11 Unmodified _QPPFSVCILFS_ 0 0 0 L1ME1_dup10184|chr5:109401888-109402798:+|1.594330332408472|0.0080356891524595|7.63|151.0|58|2|anti-sense L1ME1_dup10184|chr5:109401888-109402798:+|1.594330332408472|0.0080356891524595|7.63|151.0|58|2|anti-sense L1ME1_dup10184|chr5:109401888-109402798:+|1.594330332408472|0.0080356891524595|7.63|151.0|58|2|anti-sense MSMS UPN47_class_I_Rep_2 3 619.316650390625 2 619.317917 1236.62128 NaN NaN NaN NaN NaN NaN NaN 67.728 1 70.991 70.491 71.491 3.2636 0 0 0 0.38417 1 16349 16349 1.1933 0.59184 1 33659 12158 21448 21459 38612 38612 0.012435119482006485 QPPKMLRLQC 10 Unmodified _QPPKMLRLQC_ 0 0 0 AluJb_dup29631|chr4:39754536-39754791:-|1.8239228225296875|0.111048518985472|4.04|151.0|21|3|anti-sense AluJb_dup29631|chr4:39754536-39754791:-|1.8239228225296875|0.111048518985472|4.04|151.0|21|3|anti-sense AluJb_dup29631|chr4:39754536-39754791:-|1.8239228225296875|0.111048518985472|4.04|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_1 2 405.2215270996094 3 405.222983 1212.64712 NaN NaN NaN NaN NaN NaN NaN 48.426 1 52.108 51.608 52.608 3.6819 0 0 0 0.53105 1 10445 10445 0.62683 0 1 33660 41 21449 21460 38613 38613 0.04930082918849621 QPPKVLRV 8 Unmodified _QPPKVLRV_ 0 0 0 AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_2 3 468.8019714355469 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 89.407 1 92.86 92.36 93.36 3.4525 0 0 0 0.40746 1 22213 22213 0.69038 0 1 33661 322 21450 21461 38614 38614 0.12126360785032375 QPPKVLRV 8 Unmodified _QPPKVLRV_ 0 0 0 AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_2 3 468.80133056640625 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 91.265 1 94.726 94.226 95.226 3.4613 0 0 0 0.40746 1 22601 22601 0.69038 0 1 33662 322 21450 21461 38615 38615 0.12126360785032375 QPPKVLRV 8 Unmodified _QPPKVLRV_ 0 0 0 AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_3 4 468.8022155761719 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 91.249 1 94.651 94.151 95.151 3.401 0 0 0 0.40746 1 22833 22833 0.69038 0 1 33663 322 21450 21461 38616 38616 0.12126360785032375 QPPKVLRV 8 Unmodified _QPPKVLRV_ 0 0 0 AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense AluSx1_dup51014|chr8:100708594-100708878:+|2.613280034718413|0.4576083733944649|2.51|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_3 4 468.8021545410156 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 94.346 1 97.753 97.253 98.253 3.4068 0 0 0 0.40746 1 23485 23485 0.69038 0 1 33664 322 21450 21461 38617 38617 0.12126360785032375 QPPLHYGY 8 Unmodified _QPPLHYGY_ 0 0 0 REV__ENSG00000183439|ENST00000710271|TRIM61 REV__ENSG00000183439|ENST00000710271|TRIM61 MULTI-SECPEP UPN47_class_I_Rep_2 3 488.2767333984375 2 487.74016 973.465767 -0.13944 -6.8012E-05 -1.5484 -0.00075524 -1.6879 -0.00082325 487.7372288195264 40.938 0.079208 44.303 44.288 44.367 3.3655 12 8 2 0 0 0 0.72333 1 8216 8216 5.2307 0 1 64403 + 33665 20786 21451 21462 38618 38618 -0.022027707910638128 QPPLKARTA 9 Unmodified _QPPLKARTA_ 0 0 0 REV__AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|3|1|sense REV__AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.2957763671875 2 491.295633 980.576714 0.48745 0.00023948 0.16909 8.3075E-05 0.65654 0.00032256 491.2956350163404 107.58 0.059235 111.12 111.08 111.14 3.5345 17 8 3 0 0 0 0.43153 1 26037 26037 6.2058 0.47393 1 1356400 + 33666 17104 21452 21463 38619 38619 0.08564868917028434 QPPLKARTA 9 Unmodified _QPPLKARTA_ 0 0 0 REV__AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|3|1|sense REV__AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 491.295633 980.576714 0.2662 0.00013078 1.9981 0.00098168 2.2643 0.0011125 491.29647638750953 107.6 0.11488 111.28 111.25 111.37 3.6783 0.04002 0.0016626 NaN 6.2058 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2260300 + 33667 17104 21452 21463 0.08564868917028434 QPPLLFFL 8 Unmodified _QPPLLFFL_ 0 0 0 REV__Tigger2_dup2162|chr13:40946556-40946717:+|1.0473300568878885|0.1581661179852609|2.73|150.0|4|3|sense REV__Tigger2_dup2162|chr13:40946556-40946717:+|1.0473300568878885|0.1581661179852609|2.73|150.0|4|3|sense MSMS UPN47_class_I_Rep_1 2 487.79071044921875 2 487.789121 973.56369 NaN NaN NaN NaN NaN NaN NaN 72.961 1 76.341 75.841 76.841 3.3799 0 0 0 0.40738 1 17886 17886 0.79363 0 1 + 33668 32645 21453 21464 38620 38620 0.0758503780494948 QPPLLILRE 9 Unmodified _QPPLLILRE_ 0 0 0 L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|120|3|sense L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|120|3|sense L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|120|3|sense MSMS UPN48_class_I_Rep_3 7 539.8322143554688 2 539.834591 1077.65463 NaN NaN NaN NaN NaN NaN NaN 85.964 1 89.735 89.235 90.235 3.7701 0 0 0 0.39598 1 20403 20403 1.6526 0 1 33669 14366 21454 21465 38621 38621 0.11890881782437646 QPPNQFLYI 9 Unmodified _QPPNQFLYI_ 0 0 0 REV__L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|109|3|anti-sense REV__L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|109|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.7965698242188 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.33654 1 16251 16251 11.64 1.5664 1 271980 + 33670 27271 21455 21466 38622 38622 0.021500294773204587 QPPPRRLSR 9 Unmodified _QPPPRRLSR_ 0 0 0 REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1 REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1 MSMS UPN46_class_I_Rep_3 1 553.830322265625 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 97.275 1 97.275 96.775 97.775 0 0 0 0 0.39598 1 23663 23663 1.6526 0 1 + 33671 31945 21456 21467 38623 38623 0.09826167305504896 QPPPRRLSR 9 Unmodified _QPPPRRLSR_ 0 0 0 REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1 REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1 MULTI-MSMS UPN48_class_I_Rep_3 7 553.8307495117188 2 553.830706 1105.64686 0.39294 0.00021762 -1.1261 -0.00062366 -0.73314 -0.00040604 553.8300229718009 93.453 0.27715 97.344 97.312 97.589 3.8914 56 33 2 0 0 0 0.46869 1 22143 22143 3.9444 0 1 198310 + 33672 31945 21456 21467 38624 38624 0.09826167305504896 QPPQTQVILP 10 Unmodified _QPPQTQVILP_ 0 0 0 AluJb_dup115359|chr19:15319651-15319957:+|1.4294159381617264|0.0179100961516835|6.32|151.0|20|2|anti-sense AluJb_dup115359|chr19:15319651-15319957:+|1.4294159381617264|0.0179100961516835|6.32|151.0|20|2|anti-sense AluJb_dup115359|chr19:15319651-15319957:+|1.4294159381617264|0.0179100961516835|6.32|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 560.8217163085938 2 560.821681 1119.62881 NaN NaN NaN NaN NaN NaN NaN 112.03 1 115.55 115.05 116.05 3.5207 0 0 0 0.53105 1 27508 27508 1.4819 0.28856 1 33673 25 21457 21468 38625 38625 0.07377987540144204 QPPSMPATL 9 Unmodified _QPPSMPATL_ 0 0 0 ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 471.7732849121094 2 471.241678 940.468803 0.22655 0.00010676 2.8879 0.0013609 3.1144 0.0014676 471.2430875327058 109.1 0.25308 112.71 112.56 112.81 3.6046 26 19 3 0 0 0 0.12099 1 26857 26857 1.4819 0 1 1064600 33674 6415 21458 21469 38626 38626 -0.0038126372853639623 QPPSMPATL 9 Unmodified _QPPSMPATL_ 0 0 0 ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 471.241678 940.468803 0.26626 0.00012547 -0.53311 -0.00025123 -0.26685 -0.00012575 471.2409701029934 109.32 0.19959 112.85 112.72 112.92 3.5307 0.00036365 -0.0025767 NaN 1.4819 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1329700 33675 6415 21458 21469 -0.0038126372853639623 QPPSMPATL 9 Unmodified _QPPSMPATL_ 0 0 0 ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 471.241678 940.468803 0.08254 3.8896E-05 2.1717 0.0010234 2.2542 0.0010623 471.24274476778874 109.28 0.30422 112.92 112.88 113.18 3.6321 0.06915 -2.7499E-05 NaN 1.4819 50 38 2 NaN NaN NaN NaN 0 NaN NaN 0 567490 33676 6415 21458 21469 -0.0038126372853639623 QPPSMPATL 9 Unmodified _QPPSMPATL_ 0 0 0 ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF ENST00000373511.6_1_9:128200772-128200961:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 471.241678 940.468803 0.205 9.6603E-05 2.3864 0.0011246 2.5914 0.0012212 471.2427461521163 109.24 0.065475 112.92 112.9 112.97 3.6751 0.069804 0.00017484 NaN 1.4819 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1275800 33677 6415 21458 21469 -0.0038126372853639623 QPQAIFRV 8 Unmodified _QPQAIFRV_ 0 0 0 ENST00000593176.1_1_17:33464206-33469153:-|nuORF;ENSG00000073536|ENST00000442241|NLE1 ENST00000593176.1_1_17:33464206-33469153:-|nuORF ENST00000593176.1_1_17:33464206-33469153:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 479.7768249511719 2 479.777077 957.5396 -0.034516 -1.656E-05 0.12269 5.8863E-05 0.088173 4.2303E-05 479.77697890513207 47.048 0.66373 50.292 49.992 50.656 3.2439 66 41 3 0 0 0 0.82752 1 10102 10102 5.2307 0 1 104390 33678 1117 21459 21470 38627 38627 0.059131973712851504 QPQAPIKLYLV 11 Unmodified _QPQAPIKLYLV_ 0 0 0 REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|72|3|sense REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|72|3|sense MSMS UPN47_class_I_Rep_3 4 635.385498046875 2 635.381906 1268.74926 NaN NaN NaN NaN NaN NaN NaN 84.036 1 87.386 86.886 87.886 3.35 0 0 0 0.38417 1 21085 21085 1.3295 0.13619 1 + 33679 24909 21460 21471 38628 38628 0.1256339553374346 QPQFRAVL 8 Unmodified _QPQFRAVL_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS UPN47_class_I_Rep_1 2 479.77691650390625 2 479.777077 957.5396 -0.11797 -5.6602E-05 0.14765 7.0839E-05 0.029675 1.4238E-05 479.77701064152956 46.469 0.65767 50.169 49.942 50.6 3.6999 68 43 2 0 0 0 0.82752 2 9898 9856;9898 12.532 5.2423 1 131990 33680 5759 21461 21472 38629;38630 38630 0.05913197371273782 QPQFRAVL 8 Unmodified _QPQFRAVL_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS UPN47_class_I_Rep_2 3 479.77716064453125 2 479.777077 957.5396 0.021028 1.0089E-05 0.079652 3.8215E-05 0.10068 4.8304E-05 479.77703340177266 46.926 0.66231 50.278 50.023 50.685 3.3515 62 47 2 0 0 0 0.82752 1 10013 10013 19.439 8.6151 1 146900 33681 5759 21461 21472 38631 38631 0.05913197371273782 QPQKCIKVRR 10 Unmodified _QPQKCIKVRR_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|129|3|sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|129|3|sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|129|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 628.6290283203125 2 628.374423 1254.73429 0.35001 0.00021994 -0.48192 -0.00030282 -0.13191 -8.2886E-05 628.3740332053754 26.14 0.097965 26.14 26.114 26.212 0 5 4 2 0 0 0 0.56486 1 3686 3686 0.40072 0 1 68924 33682 8238 21462 21473 38632 38632 0.11711625184739205 QPQPITQFQ 9 Unmodified _QPQPITQFQ_ 0 0 0 THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.78271484375 2 543.782556 1085.55056 0.12722 6.9182E-05 -0.027963 -1.5206E-05 0.099262 5.3977E-05 543.7826396579136 44.538 2.5245 48.233 47.76 50.284 3.6951 396 161 3 0 0 0 0.1249 2 9238 9238;9277 29.082 0 1 7323300 33683 32906 21463 21474 38633;38634 38633 0.011205549548776617 QPQPITQFQ 9 Unmodified _QPQPITQFQ_ 0 0 0 THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 543.7825927734375 2 543.782556 1085.55056 0.17387 9.4547E-05 -0.036328 -1.9754E-05 0.13754 7.4792E-05 543.7826217950154 44.902 2.3505 48.257 47.73 50.08 3.3556 393 154 3 0 0 0 0.090251 3 9487 9366;9408;9487 36.127 7.0454 1 7409700 33684 32906 21463 21474 38635;38636;38637 38637 0.011205549548776617 QPQPITQFQ 9 Unmodified _QPQPITQFQ_ 0 0 0 THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense THE1B-int_dup2149|chr7:129660283-129661854:-|1.101996599688288|0.0419451196765081|4.72|150.0|62|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.78271484375 2 543.782556 1085.55056 0.21383 0.00011628 -0.0054587 -2.9684E-06 0.20837 0.00011331 543.7826467027404 45.035 2.5291 48.279 47.763 50.292 3.2441 412 158 3 0 0 0 0.1249 3 9453 9453;9492;9538 29.082 0 1 8447000 33685 32906 21463 21474 38638;38639;38640 38638 0.011205549548776617 QPQPVISI 8 Unmodified _QPQPVISI_ 0 0 0 ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|6|intron;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|9|intron;ENSG00000146263|ENST00000683635|MMS22L;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|8|intron;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|5|intron;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|1|intron;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|2|intron;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|3|intron ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|6|intron ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|6|intron MSMS UPN46_class_I_Rep_3 1 441.25823974609375 2 441.258185 880.501818 NaN NaN NaN NaN NaN NaN NaN 32.283 1 32.283 31.783 32.783 0 0 0 0 0.40746 1 5503 5503 0.69038 0 1 33686 3431 21464 21475 38641 38641 0.05678686385817855 QPQTCAAR 8 Unmodified _QPQTCAAR_ 0 0 0 REV__ENST00000485745.1_1_1:151110530-151111906:-|nuORF REV__ENST00000485745.1_1_1:151110530-151111906:-|nuORF MSMS UPN47_class_I_Rep_1 2 437.7156677246094 2 437.713619 873.412685 NaN NaN NaN NaN NaN NaN NaN 96.513 1 100.29 99.789 100.79 3.7767 0 0 0 0.4044 1 23926 23926 4.756 0.42677 1 + 33687 22600 21465 21476 38642 38642 -0.02908471845364602 QPRAKKKS 8 Unmodified _QPRAKKKS_ 0 0 0 nc|ENSG00000171435|Q6VAB6-2|KSR2;ENST00000545002.1_1_12:117955650-118115004:-|nuORF nc|ENSG00000171435|Q6VAB6-2|KSR2 nc|ENSG00000171435|Q6VAB6-2|KSR2 MSMS UPN47_class_I_Rep_3 4 471.7952880859375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 53.211 1 56.406 55.906 56.906 3.1948 0 0 0 0.40753 1 11985 11985 0.6015 0 1 33688 7373 21466 21477 38643 38643 0.10392288636899139 QPRELPPGRL 10 Unmodified _QPRELPPGRL_ 0 0 0 ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000160460|ENST00000598249|SPTBN4 MULTI-MSMS UPN47_class_I_Rep_1 2 581.8394775390625 2 581.838197 1161.66184 0.49521 0.00028813 1.0564 0.00061466 1.5516 0.00090279 581.8389859994446 108.69 0.21651 112.32 112.28 112.49 3.6355 28 17 2 0 0 0 0.54822 1 26720 26720 5.7319 0.83484 1 8529000 33689 3876 21467 21478 38644 38644 0.08747614382855318 QPRGQGTM 8 Unmodified _QPRGQGTM_ 0 0 0 ENST00000392973.7_1_16:90075326-90076003:-|nuORF ENST00000392973.7_1_16:90075326-90076003:-|nuORF ENST00000392973.7_1_16:90075326-90076003:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.7157897949219 2 437.713619 873.412685 NaN NaN NaN NaN NaN NaN NaN 96.407 1 100.02 99.52 100.52 3.6124 0 0 0 0.4044 1 23225 23225 4.756 0 1 33690 6530 21468 21479 38645 38645 -0.029084718453532332 QPRGQGTM 8 Unmodified _QPRGQGTM_ 0 0 0 ENST00000392973.7_1_16:90075326-90076003:-|nuORF ENST00000392973.7_1_16:90075326-90076003:-|nuORF ENST00000392973.7_1_16:90075326-90076003:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.7142639160156 2 437.713619 873.412685 NaN NaN NaN NaN NaN NaN NaN 96.544 1 100.16 99.656 100.66 3.6124 0 0 0 0.4044 1 23263 23263 4.756 0.42677 1 33691 6530 21468 21479 38646 38646 -0.029084718453532332 QPRILRKHQK 10 Unmodified _QPRILRKHQK_ 0 0 0 MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|4|1|sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|4|1|sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 434.82366943359375 3 435.273834 1302.79967 NaN NaN NaN NaN NaN NaN NaN 108.74 1 112.27 111.77 112.77 3.5333 0 0 0 0.53105 1 26413 26413 3.5871 0.95582 1 33692 16277 21469 21480 38647 38647 0.16038362702124687 QPRLHVVE 8 Unmodified _QPRLHVVE_ 0 0 0 ENST00000463544.1_1_2:162275405-162275651:+|nuORF;nc|ENSG00000136535|Q16650-2|TBR1;ENSG00000136535|ENST00000389554|TBR1 ENST00000463544.1_1_2:162275405-162275651:+|nuORF ENST00000463544.1_1_2:162275405-162275651:+|nuORF MSMS UPN47_class_I_Rep_2 3 489.2925720214844 2 489.279983 976.545414 NaN NaN NaN NaN NaN NaN NaN 31.864 1 35.333 34.833 35.833 3.4691 0 0 0 0.40501 1 5448 5448 3.9444 1.6417 1 33693 2975 21470 21481 38648 38648 0.056202958829544514 QPRLLSVS 8 Unmodified _QPRLLSVS_ 0 0 0 ENST00000419165.5_1_X:103173554-103173671:+|nuORF ENST00000419165.5_1_X:103173554-103173671:+|nuORF ENST00000419165.5_1_X:103173554-103173671:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.2848205566406 2 450.269084 898.523616 NaN NaN NaN NaN NaN NaN NaN 67.525 1 70.717 70.217 71.217 3.1914 0 0 0 0.40746 1 16354 16354 0.69038 0 1 33694 6671 21471 21482 38649 38649 0.07029491134392174 QPRSKKVK 8 Unmodified _QPRSKKVK_ 0 0 0 MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.804 1 69.161 68.661 69.661 3.3576 0 0 0 0.40738 1 15720 15720 0.79363 0 1 33695 15919 21472 21483 38650 38650 0.12232861670997863 QPRSKKVK 8 Unmodified _QPRSKKVK_ 0 0 0 MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 71.027 1 74.31 73.81 74.81 3.2828 0 0 0 0.40746 1 17337 17337 0.69038 0 1 33696 15919 21472 21483 38651 38651 0.12232861670997863 QPRSKKVK 8 Unmodified _QPRSKKVK_ 0 0 0 MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MER33_dup8556|chr19:4050564-4050815:+|2.47467987219126|0.3081847592444999|3.01|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8121337890625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 71.236 1 74.455 73.955 74.955 3.2188 0 0 0 0.40746 1 17468 17468 0.69038 0 1 33697 15919 21472 21483 38652 38652 0.12232861670997863 QPRVQELK 8 Unmodified _QPRVQELK_ 0 0 0 REV__ENST00000562659.1_1_16:85698640-85699994:+|nuORF REV__ENST00000562659.1_1_16:85698640-85699994:+|nuORF MSMS UPN48_class_I_Rep_1 5 499.29296875 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 90.29 1 93.916 93.416 94.416 3.626 0 0 0 0.40643 1 21698 21698 2.0598 0 1 + 33698 18967 21473 21484 38653 38653 0.07320565054430972 QPRVQHRQG 9 Unmodified _QPRVQHRQG_ 0 0 0 REV__ENST00000494792.1_1_10:126305830-126306172:-|nuORF REV__ENST00000494792.1_1_10:126305830-126306172:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 553.813720703125 2 553.302313 1104.59007 0.51349 0.00028412 -2.1763 -0.0012041 -1.6628 -0.00092001 553.3013642765588 57.647 0.17841 60.939 60.82 60.998 3.2912 17 15 2 0 0 0 0.12321 1 13279 13279 3.9444 0.3479 1 186100 + 33699 22650 21474 21485 38654 38654 0.041961197489854385 QPSAKAYQPV 10 Unmodified _QPSAKAYQPV_ 0 0 0 ENSG00000137501|ENST00000359152|SYTL2 ENSG00000137501|ENST00000359152|SYTL2 ENSG00000137501|ENST00000359152|SYTL2 MULTI-SECPEP UPN47_class_I_Rep_1 2 545.2537841796875 2 544.790381 1087.56621 0.44978 0.00024503 -0.15562 -8.4783E-05 0.29415 0.00016025 544.79038751812 59.062 0.78388 62.479 62.176 62.96 3.4171 97 54 2 0 0 0 0.84575 1 13673 13673 11.495 2.1116 1 180230 33700 3030 21475 21486 38655 38655 0.025928414719373905 QPSAKAYQPV 10 Unmodified _QPSAKAYQPV_ 0 0 0 ENSG00000137501|ENST00000359152|SYTL2 ENSG00000137501|ENST00000359152|SYTL2 ENSG00000137501|ENST00000359152|SYTL2 MULTI-SECPEP UPN47_class_I_Rep_2 3 545.2537841796875 2 544.790381 1087.56621 0.47903 0.00026097 -0.1376 -7.4963E-05 0.34143 0.00018601 544.7903428316063 59.33 0.71404 62.603 62.282 62.996 3.2731 89 50 3 0 0 0 0.84575 1 13733 13733 7.609 7.609 1 142830 33701 3030 21475 21486 38656 38656 0.025928414719373905 QPSQETVSTQ 10 Unmodified _QPSQETVSTQ_ 0 0 0 REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|157|3|sense REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|157|3|sense MSMS UPN47_class_I_Rep_1 2 552.7622680664062 2 552.762017 1103.50948 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.09 116.59 117.59 3.572 0 0 0 0.53105 1 28011 28011 2.9952 0 1 + 33702 29735 21476 21487 38657 38657 -0.0381325087521418 QPSRTICP 8 Unmodified _QPSRTICP_ 0 0 0 ENST00000399781.5_1_22:18120937-18121120:+|nuORF ENST00000399781.5_1_22:18120937-18121120:+|nuORF ENST00000399781.5_1_22:18120937-18121120:+|nuORF MSMS UPN48_class_I_Rep_2 6 451.231689453125 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 77.098 1 80.709 80.209 81.209 3.6116 0 0 0 0.40604 1 18231 18231 2.5775 0 1 33703 6591 21477 21488 38658 38658 -0.005470146685070176 QPTDLFYQP 9 Unmodified _QPTDLFYQP_ 0 0 0 REV__nc|ENSG00000178922|Q5T013-2|HYI REV__nc|ENSG00000178922|Q5T013-2|HYI MSMS UPN47_class_I_Rep_2 3 554.7669677734375 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 27.664 1 31.163 30.663 31.663 3.4986 0 0 0 0.37476 1 4187 4187 6.7232 1.4263 1 + 33704 21975 21478 21489 38659 38659 -0.025785536562807465 QPTKENSA 8 Unmodified _QPTKENSA_ 0 0 0 L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|73|2|sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|73|2|sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|73|2|sense MSMS UPN48_class_I_Rep_1 5 437.71539306640625 2 437.716882 873.41921 NaN NaN NaN NaN NaN NaN NaN 96.53 1 100.14 99.642 100.64 3.6124 0 0 0 0.40472 1 23259 23259 4.3292 0 1 33705 15079 21479 21490 38660 38660 -0.022562554130104218 QPTPRLAKASK 11 Unmodified _QPTPRLAKASK_ 0 0 0 REV__ENSG00000130338|ENST00000367097|TULP4 REV__ENSG00000130338|ENST00000367097|TULP4 MSMS UPN47_class_I_Rep_2 3 598.8607788085938 2 598.859129 1195.70371 NaN NaN NaN NaN NaN NaN NaN 52.505 1 55.838 55.338 56.338 3.3332 0 0 0 0.38417 1 11715 11715 2.4985 0.19575 1 + 33706 18936 21480 21491 38661 38661 0.1136817007134141 QPVGVFLALL 10 Unmodified _QPVGVFLALL_ 0 0 0 REV__HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|207|1|anti-sense REV__HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|207|1|anti-sense MSMS UPN47_class_I_Rep_2 3 528.8248901367188 2 528.826235 1055.63792 NaN NaN NaN NaN NaN NaN NaN 61.256 1 64.521 64.021 65.021 3.2654 0 0 0 0.53105 1 14386 14386 3.2813 0.70383 1 + 33707 23842 21481 21492 38662 38662 0.11232380896467475 QPVHTHILY 9 Unmodified _QPVHTHILY_ 0 0 0 HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|27|2|sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|27|2|sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|27|2|sense MSMS UPN47_class_I_Rep_1 2 554.2979736328125 2 554.300916 1106.58728 NaN NaN NaN NaN NaN NaN NaN 37.521 1 41.186 40.686 41.686 3.6652 0 0 0 0.38299 1 7129 7129 4.756 1.8668 1 33708 7896 21482 21493 38663 38663 0.038248515714712994 QPVKRRTQQTI 11 Unmodified _QPVKRRTQQTI_ 0 0 0 REV__L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|44|2|sense REV__L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|44|2|sense MSMS UPN47_class_I_Rep_1 2 452.2691345214844 3 452.268637 1353.78408 NaN NaN NaN NaN NaN NaN NaN 114.02 1 117.59 117.09 118.09 3.572 0 0 0 0.38417 1 28160 28160 0.50596 0 1 + 33709 25824 21483 21494 38664 38664 0.12134031394430167 QPVLGHYVI 9 Unmodified _QPVLGHYVI_ 0 0 0 REV__ENSG00000182253|ENST00000336292|SYNM REV__ENSG00000182253|ENST00000336292|SYNM MULTI-MSMS UPN48_class_I_Rep_3 7 513.2925415039062 2 513.292559 1024.57057 0.32373 0.00016617 0.073414 3.7683E-05 0.39714 0.00020385 513.2924203865554 61.977 0.82293 65.488 65.123 65.946 3.5104 163 74 3 0 0 0 0.41259 1 13865 13865 7.2892 0 1 335930 + 33710 20751 21484 21495 38665 38665 0.05926350685513171 QPVQFSQPLH 10 Unmodified _QPVQFSQPLH_ 0 0 0 nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A nc|ENSG00000135100|P20823-2|HNF1A nc|ENSG00000135100|P20823-2|HNF1A MSMS UPN48_class_I_Rep_2 6 590.8097534179688 2 590.809105 1179.60366 NaN NaN NaN NaN NaN NaN NaN 37.871 1 41.587 41.087 42.087 3.7164 0 0 0 0.53105 1 6530 6530 1.4819 0 1 33711 2885 21485 21496 38666 38666 0.021039327375547145 QPVTKNTF 8 Unmodified _QPVTKNTF_ 0 0 0 ENST00000400595.3_1_13:21893667-21894339:+|nuORF;GRK5|p.D270*|1|0.42|ENSG00000198873|chr10:119436713-119436714|-/G|frameshift_variant;nc|ENSG00000125388|P32298-3|GRK4;nc|ENSG00000125388|P32298-4|GRK4;nc|ENSG00000125388|P32298-2|GRK4;nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;ENSG00000125388|ENST00000398052|GRK4;nc|ENSG00000198055|P43250-2|GRK6;ENSG00000198873|ENST00000392870|GRK5 ENST00000400595.3_1_13:21893667-21894339:+|nuORF ENST00000400595.3_1_13:21893667-21894339:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 467.75262451171875 2 467.753267 933.491981 0.077584 3.629E-05 -0.04899 -2.2915E-05 0.028594 1.3375E-05 467.75313236861695 50.734 1.0065 54.259 53.773 54.78 3.5246 146 65 3 0 0 0 0.82752 1 10279 10279 2.0598 2.0598 1 855060 33712 2503 21486 21497 38667 38667 0.022574983804133808 QPVVVILI 8 Unmodified _QPVVVILI_ 0 0 0 REV__LTR13A_dup10|chr1:154460797-154461758:-|1.5319554861051832|0.2003829873368322|2.93|151.0|9|1|sense REV__LTR13A_dup10|chr1:154460797-154461758:-|1.5319554861051832|0.2003829873368322|2.93|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79931640625 2 440.796946 879.57934 0.16156 7.1215E-05 2.6125 0.0011516 2.774 0.0012228 440.7993820405865 89.065 0.45479 89.065 88.701 89.156 0 71 48 2 0 0 0 0.82752 1 21439 21439 0.69038 0 1 228590 + 33713 30840 21487 21498 38668 38668 0.1347332432201256 QPVVVILI 8 Unmodified _QPVVVILI_ 0 0 0 REV__LTR13A_dup10|chr1:154460797-154461758:-|1.5319554861051832|0.2003829873368322|2.93|151.0|9|1|sense REV__LTR13A_dup10|chr1:154460797-154461758:-|1.5319554861051832|0.2003829873368322|2.93|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7995910644531 2 440.796946 879.57934 0.16159 7.1227E-05 2.4039 0.0010596 2.5654 0.0011308 440.7993455260009 97.292 0.37493 97.292 97.15 97.525 0 57 40 2 0 0 0 0.82752 1 23706 23706 0.69038 0 1 189650 + 33714 30840 21487 21498 38669 38669 0.1347332432201256 QPVVVILI 8 Unmodified _QPVVVILI_ 0 0 0 REV__LTR13A_dup10|chr1:154460797-154461758:-|1.5319554861051832|0.2003829873368322|2.93|151.0|9|1|sense REV__LTR13A_dup10|chr1:154460797-154461758:-|1.5319554861051832|0.2003829873368322|2.93|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7995910644531 2 440.796946 879.57934 0.038921 1.7156E-05 2.298 0.001013 2.337 0.0010301 440.79944763249017 25.795 0.58357 29.561 29.13 29.714 3.7663 90 64 2 0 0 0 0.82752 1 3216 3216 0.69038 0 1 109930 + 33715 30840 21487 21498 38670 38670 0.1347332432201256 QPWALQHPH 9 Unmodified _QPWALQHPH_ 0 0 0 ROR2|p.H362Afs*21|1|0.17|ENSG00000169071|chr9:91731009-91731010|-/C|frameshift_variant;ENSG00000169071|ENST00000375708|ROR2 ROR2|p.H362Afs*21|1|0.17|ENSG00000169071|chr9:91731009-91731010|-/C|frameshift_variant ROR2|p.H362Afs*21|1|0.17|ENSG00000169071|chr9:91731009-91731010|-/C|frameshift_variant MSMS UPN48_class_I_Rep_2 6 557.282470703125 2 557.283057 1112.55156 NaN NaN NaN NaN NaN NaN NaN 65.624 1 69.104 68.604 69.604 3.4792 0 0 0 0.39518 1 14930 14930 1.8442 0 1 33716 4402 21488 21499 38671 38671 -0.00021185885543673066 QPWQFEEVP 9 Unmodified _QPWQFEEVP_ 0 0 0 REV__ENSG00000010818|ENST00000367603|HIVEP2 REV__ENSG00000010818|ENST00000367603|HIVEP2 MULTI-MSMS UPN48_class_I_Rep_2 6 580.2749633789062 2 580.274564 1158.53457 0.48471 0.00028126 -0.10952 -6.3549E-05 0.37519 0.00021772 580.2743359564248 51.504 0.44954 55.171 54.901 55.35 3.6679 52 38 2 0 0 0 0.41259 1 10656 10656 7.2892 0 1 229400 + 33717 17574 21489 21500 38672 38672 -0.03835151282009974 QPYIFGEL 8 Unmodified _QPYIFGEL_ 0 0 0 L1ME1_dup10633|chr5:150748971-150749531:+|1.3611089698850556|0.0345573241436783|5.3|151.0|33|2|anti-sense L1ME1_dup10633|chr5:150748971-150749531:+|1.3611089698850556|0.0345573241436783|5.3|151.0|33|2|anti-sense L1ME1_dup10633|chr5:150748971-150749531:+|1.3611089698850556|0.0345573241436783|5.3|151.0|33|2|anti-sense MSMS UPN47_class_I_Rep_2 3 483.74859619140625 2 483.750193 965.485833 NaN NaN NaN NaN NaN NaN NaN 63.956 1 67.212 66.712 67.712 3.2556 0 0 0 0.40472 1 15203 15203 4.3292 1.44 1 33718 12168 21490 21501 38673 38673 0.0017098014890279956 QPYLLHINY 9 Unmodified _QPYLLHINY_ 0 0 0 REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|133|2|anti-sense REV__L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|133|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8093872070312 2 580.808574 1159.60259 0.39495 0.00022939 0.061265 3.5583E-05 0.45622 0.00026498 580.8085242816937 45.139 1.554 48.897 48.441 49.995 3.7581 271 115 3 0 0 0 0.46869 1 8600 8600 3.9444 0 1 1057600 + 33719 27085 21491 21502 38674 38674 0.029177183686670105 QPYRPFHY 8 Unmodified _QPYRPFHY_ 0 0 0 REV__L1M5_dup8539|chr2:233097068-233097780:-|3.359511789904062|0.0192007939706768|7.45|151.0|23|3|sense REV__L1M5_dup8539|chr2:233097068-233097780:-|3.359511789904062|0.0192007939706768|7.45|151.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 554.2722778320312 2 554.272158 1106.52976 NaN NaN NaN NaN NaN NaN NaN 89.752 1 93.426 92.926 93.926 3.6738 0 0 0 0.40738 1 22441 22441 0.79363 0 1 + 33720 24710 21492 21503 38675 38675 -0.01923990634099937 QPYSRFLL 8 Unmodified _QPYSRFLL_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;chr7:44965860-44966672|69|10.38|0.31|5.05|-|1|MYO1G,MYO1G|1;ENST00000463516.5_1_7:45006053-45008547:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS UPN47_class_I_Rep_1 2 512.2841186523438 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 56.68 1 60.137 59.637 60.637 3.4572 0 0 0 0.38112 1 12964 12964 14.838 0 1 33721 2964 21493 21504 38676 38676 0.044540641684761795 QPYSRFLL 8 Unmodified _QPYSRFLL_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;chr7:44965860-44966672|69|10.38|0.31|5.05|-|1|MYO1G,MYO1G|1;ENST00000463516.5_1_7:45006053-45008547:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS UPN47_class_I_Rep_2 3 512.2850341796875 2 512.284734 1022.55492 0.19296 9.8848E-05 -0.15939 -8.1655E-05 0.033562 1.7193E-05 512.2844336698128 56.852 0.86612 60.153 59.863 60.729 3.3009 98 72 2 0 0 0 0.82752 2 13036 13036;13107 14.838 0 1 209090 33722 2964 21493 21504 38677;38678 38677 0.044540641684761795 QQAKKLGYK 9 Unmodified _QQAKKLGYK_ 0 0 0 ENSG00000124201.15,ZNFX1,chr20,-,I4.1,49264865,49266134|62|8.12|2|intron;ENSG00000124201.15,ZNFX1,chr20,-,I4.1,49264865,49266134|62|8.12|1|intron;ENSG00000124201.15,ZNFX1,chr20,-,I6.1,49260578,49263333|23|7.61|1|intron;nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201.15,ZNFX1,chr20,-,I4.1,49264865,49266134|62|8.12|2|intron ENSG00000124201.15,ZNFX1,chr20,-,I4.1,49264865,49266134|62|8.12|2|intron MSMS UPN47_class_I_Rep_3 4 532.318603515625 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 91.963 1 95.367 94.867 95.867 3.4034 0 0 0 0.39518 1 22974 22974 1.8442 0.19162 1 33723 2452 21494 21505 38679 38679 0.0897742460556401 QQDHLSRHP 9 Unmodified _QQDHLSRHP_ 0 0 0 ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1 ENSG00000276581|ENST00000437823|SPATA31A5 ENSG00000276581|ENST00000437823|SPATA31A5 MSMS UPN47_class_I_Rep_2 3 559.2774047851562 2 559.278503 1116.54245 NaN NaN NaN NaN NaN NaN NaN 13.048 1 16.436 15.936 16.936 3.388 0 0 0 0.38784 1 224 224 3.5965 1.2938 1 33724 5540 21495 21506 38680 38680 -0.011155792418549026 QQDKKLRIFRT 11 Unmodified _QQDKKLRIFRT_ 0 0 0 L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|66|2|sense L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|66|2|sense L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|66|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 478.61810302734375 3 478.284287 1431.83103 -0.24089 -0.00011521 -0.62931 -0.00030099 -0.8702 -0.0004162 478.617977990685 13.548 0.35745 16.936 16.781 17.138 3.388 80 43 3 0 0 0 0.68478 1 338 338 0.094841 0 1 40936 33725 14769 21496 21507 38681 38681 0.1323889094551305 QQEALELNY 9 Unmodified _QQEALELNY_ 0 0 0 L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|39|3|sense L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|39|3|sense L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.2705688476562 2 554.269478 1106.5244 0.43893 0.00024329 -0.18436 -0.00010219 0.25457 0.0001411 554.269358902843 73.599 0.56213 76.904 76.673 77.235 3.3048 88 51 2 0 0 0 0.37599 2 18055 18055;18175 9.3831 0 1 148620 33726 8623 21497 21508 38682;38683 38682 -0.02459759007251705 QQEALELNY 9 Unmodified _QQEALELNY_ 0 0 0 L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|39|3|sense L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|39|3|sense L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.2694091796875 2 554.269478 1106.5244 0.45237 0.00025073 -0.36376 -0.00020162 0.088606 4.9111E-05 554.2692226454594 73.712 0.55019 76.948 76.614 77.164 3.2363 86 50 2 0 0 0 0.43982 1 18126 18126 5.7319 0 1 110120 33727 8623 21497 21508 38684 38684 -0.02459759007251705 QQEASVRF 8 Unmodified _QQEASVRF_ 0 0 0 REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|217|2|anti-sense REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|217|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.7462463378906 2 482.745973 963.477394 -0.1956 -9.4424E-05 -0.043852 -2.1169E-05 -0.23945 -0.00011559 482.7459174529814 39.14 0.62275 42.519 42.283 42.906 3.3785 52 33 2 0 0 0 0.82752 2 7718 7714;7718 10.824 1.4408 1 82092 + 33728 29009 21498 21509 38685;38686 38686 -0.005805737677064826 QQEASVRF 8 Unmodified _QQEASVRF_ 0 0 0 REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|217|2|anti-sense REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|217|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.7451171875 2 482.745973 963.477394 -0.3758 -0.00018142 0.1957 9.4473E-05 -0.1801 -8.6943E-05 482.7461004618638 39.294 0.60548 42.532 42.219 42.824 3.238 65 42 2 0 0 0 0.82752 1 7810 7810 7.9102 0 1 84363 + 33729 29009 21498 21509 38687 38687 -0.005805737677064826 QQEKKKRINRN 11 Unmodified _QQEKKKRINRN_ 0 0 0 L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|30|2|sense L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|30|2|sense L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 481.283203125 3 481.283057 1440.82734 0.24773 0.00011923 0.74244 0.00035732 0.99017 0.00047655 481.28337936932115 94.368 0.38029 98.119 97.781 98.162 3.7508 64 49 2 0 0 0 0.68024 1 23437 23437 0.50596 0.051438 1 181060 33730 8927 21499 21510 38688 38688 0.12456221171714787 QQELLRLVRP 10 Unmodified _QQELLRLVRP_ 0 0 0 ENSG00000186766|ENST00000388920|FOXI2 ENSG00000186766|ENST00000388920|FOXI2 ENSG00000186766|ENST00000388920|FOXI2 MSMS UPN48_class_I_Rep_3 7 626.3800048828125 2 626.380229 1250.7459 NaN NaN NaN NaN NaN NaN NaN 102.26 1 106.03 105.53 106.53 3.776 0 0 0 0.53105 1 24165 24165 0 0 1 33731 5163 21500 21511 38689 38689 0.13056145479754377 QQFATEVFK 9 Unmodified _QQFATEVFK_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS UPN48_class_I_Rep_1 5 549.2858276367188 2 549.284931 1096.55531 0.49724 0.00027313 1.5007 0.00082431 1.9979 0.0010974 549.28573901992 38.927 0.684 42.432 42.205 42.889 3.5048 75 60 2 0 0 0 0.47197 1 6926 6926 3.5965 0.31518 1 143270 33732 5242 21501 21512 38690 38690 0.010894390976773138 QQFINPKGN 9 Unmodified _QQFINPKGN_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MSMS UPN47_class_I_Rep_3 4 523.2894897460938 2 523.274898 1044.53524 NaN NaN NaN NaN NaN NaN NaN 67.173 1 70.365 69.865 70.865 3.1914 0 0 0 0.28335 1 16249 16249 11.64 0.81637 1 33733 4092 21502 21513 38691 38691 0.014756881577113745 QQFLIQQQY 9 Unmodified _QQFLIQQQY_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENST00000482952.5_1_2:233671364-233680450:+|nuORF nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MSMS UPN46_class_I_Rep_3 1 598.3101196289062 2 598.308938 1194.60332 NaN NaN NaN NaN NaN NaN NaN 63.081 1 63.081 62.581 63.581 0 0 0 0 0.17222 1 14145 14145 18.146 4.2403 1 33734 5501 21503 21514 38692 38692 0.013805130177388492 QQFLSVKK 8 Unmodified _QQFLSVKK_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS UPN46_class_I_Rep_3 1 489.4930114746094 2 489.292559 976.570566 NaN NaN NaN NaN NaN NaN NaN 28.698 1 28.698 28.198 29.198 0 0 0 0 0.40746 1 4443 4443 0.69038 0 1 + 33735 20925 21504 21515 38693 38693 0.08134350685531899 QQHQQNQN 8 Unmodified _QQHQQNQN_ 0 0 0 ENSG00000104081|ENST00000354670|BMF ENSG00000104081|ENST00000354670|BMF ENSG00000104081|ENST00000354670|BMF MSMS UPN47_class_I_Rep_1 2 512.729248046875 2 512.731386 1023.44822 NaN NaN NaN NaN NaN NaN NaN 116 1 119.59 119.09 120.09 3.5943 0 0 0 0.40625 1 28718 28718 2.3027 0.82083 1 33736 1676 21505 21516 38694 38694 -0.06256718064003053 QQHYLNNSK 9 Unmodified _QQHYLNNSK_ 0 0 0 L1MB7_dup4980|chr3:172094231-172094630:-|1.8447730855313875|0.0206755971160546|6.48|151.0|1|1|sense L1MB7_dup4980|chr3:172094231-172094630:-|1.8447730855313875|0.0206755971160546|6.48|151.0|1|1|sense L1MB7_dup4980|chr3:172094231-172094630:-|1.8447730855313875|0.0206755971160546|6.48|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 566.2818603515625 2 566.280712 1130.54687 0.54255 0.00030724 2.1319 0.0012072 2.6744 0.0015145 566.7840778961931 18.364 0.061754 21.895 21.87 21.932 3.5313 11 7 2 0 0 0 0.49026 1 1230 1230 1.6526 0 1 31838 33737 10842 21506 21517 38695 38695 -0.01318114818968752 QQHYLNNSK 9 Unmodified _QQHYLNNSK_ 0 0 0 L1MB7_dup4980|chr3:172094231-172094630:-|1.8447730855313875|0.0206755971160546|6.48|151.0|1|1|sense L1MB7_dup4980|chr3:172094231-172094630:-|1.8447730855313875|0.0206755971160546|6.48|151.0|1|1|sense L1MB7_dup4980|chr3:172094231-172094630:-|1.8447730855313875|0.0206755971160546|6.48|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 566.280712 1130.54687 0.57754 0.00032705 1.2008 0.00067996 1.7783 0.001007 566.2802541321715 18.17 0.032269 21.821 21.806 21.838 3.6509 -0.036953 -0.00092673 NaN 1.6526 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 11325 33738 10842 21506 21517 -0.01318114818968752 QQIFWRRL 8 Unmodified _QQIFWRRL_ 0 0 0 REV__nc|ENSG00000146143|P49643-2|PRIM2 REV__nc|ENSG00000146143|P49643-2|PRIM2 MSMS UPN47_class_I_Rep_1 2 573.7791137695312 2 573.830175 1145.6458 NaN NaN NaN NaN NaN NaN NaN 18.732 1 22.312 21.812 22.812 3.5806 0 0 0 0.40746 1 1617 1617 0.69038 0 1 + 33739 19531 21507 21518 38696 38696 0.0787995293660515 QQIHYKKS 8 Unmodified _QQIHYKKS_ 0 0 0 REV__nc|ENSG00000174226|Q8N9S9-2|SNX31 REV__nc|ENSG00000174226|Q8N9S9-2|SNX31 MSMS UPN48_class_I_Rep_1 5 516.2656860351562 2 516.285266 1030.55598 NaN NaN NaN NaN NaN NaN NaN 36.137 1 39.647 39.147 40.147 3.5101 0 0 0 0.40625 1 5999 5999 2.3027 0.4585 1 + 33740 20512 21508 21519 38697 38697 0.04192278537357197 QQISPQIYY 9 Unmodified _QQISPQIYY_ 0 0 0 L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|144|3|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|144|3|sense L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|144|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2905883789062 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.36392 1 18092 18092 10.074 10.074 1 5554300 33741 9794 21509 21520 38698 38698 0.0021342175209611014 QQIWRTLPK 9 Unmodified _QQIWRTLPK_ 0 0 0 REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|83|2|sense REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|83|2|sense MSMS UPN46_class_I_Rep_3 1 585.343505859375 2 585.343115 1168.67168 NaN NaN NaN NaN NaN NaN NaN 92.878 1 92.878 92.378 93.378 0 0 0 0 0.4007 1 22493 22493 0.52476 0 1 + 33742 23572 21510 21521 38699 38699 0.09408802388225013 QQIYLLTL 8 Unmodified _QQIYLLTL_ 0 0 0 L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|72|3|anti-sense L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|72|3|anti-sense L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|72|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.29510498046875 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 68.816 1 68.816 68.316 69.316 0 0 0 0 0.40746 1 15733 15733 0.69038 0 1 33743 12795 21511 21522 38700 38700 0.07931815108440787 QQKAALLK 8 Unmodified _QQKAALLK_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MSMS UPN47_class_I_Rep_3 4 450.2867736816406 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 38.66 1 41.898 41.398 42.398 3.238 0 0 0 0.4044 1 7552 7552 4.756 0.81161 1 33744 2190 21512 21523 38701 38701 0.10666368031093043 QQKAVLSTL 9 Unmodified _QQKAVLSTL_ 0 0 0 Tigger1_dup9780|chr13:100467670-100468741:-|1.024833063631432|0.0691637428428597|3.89|149.0|62|2|anti-sense;Tigger1_dup3614|chr4:153370819-153372334:-|1.724747175250568|0.4461990466272801|1.95|151.0|89|3|anti-sense Tigger1_dup9780|chr13:100467670-100468741:-|1.024833063631432|0.0691637428428597|3.89|149.0|62|2|anti-sense Tigger1_dup9780|chr13:100467670-100468741:-|1.024833063631432|0.0691637428428597|3.89|149.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.2960510253906 2 494.295299 986.576045 0.18197 8.9947E-05 0.1677 8.2891E-05 0.34967 0.00017284 494.2953643796371 60.662 0.43584 64.044 63.773 64.209 3.3815 60 41 2 0 0 0 0.38714 1 14162 14162 8.7454 0 1 127490 33745 33084 21513 21524 38702 38702 0.08222029477337855 QQKGIYIVY 9 Unmodified _QQKGIYIVY_ 0 0 0 REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|74|3|sense REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|74|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 556.3104248046875 2 556.310949 1110.60735 0.55334 0.00030783 -0.73408 -0.00040838 -0.18074 -0.00010055 556.3106612464936 66.941 0.20166 70.392 70.276 70.478 3.4516 16 11 2 0 0 0 0.46434 1 15349 15349 4.3292 0 1 64432 + 33746 28707 21514 21525 38703 38703 0.05646602511410492 QQKGIYIVY 9 Unmodified _QQKGIYIVY_ 0 0 0 REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|74|3|sense REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|74|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 556.3110961914062 2 556.310949 1110.60735 0.44792 0.00024918 -0.20257 -0.00011269 0.24535 0.00013649 556.3108578535008 66.62 0.16219 70.128 70.089 70.251 3.5077 13 8 2 0 0 0 0.48846 1 15154 15154 1.8442 0 1 100050 + 33747 28707 21514 21525 38704 38704 0.05646602511410492 QQKGIYIVY 9 Unmodified _QQKGIYIVY_ 0 0 0 REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|74|3|sense REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|74|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 556.310949 1110.60735 0.43658 0.00024287 -0.44758 -0.00024899 -0.011004 -6.1218E-06 556.3106526025118 67.05 0.14503 70.241 70.126 70.271 3.1914 -0.0066037 4.7856E-05 NaN 4.3292 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 35042 + 33748 28707 21514 21525 0.05646602511410492 QQKKLPTEKI 10 Unmodified _QQKKLPTEKI_ 0 0 0 L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|38|1|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|38|1|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|38|1|sense MSMS UPN46_class_I_Rep_3 1 606.8712768554688 2 606.869163 1211.72377 NaN NaN NaN NaN NaN NaN NaN 108.09 1 108.09 107.59 108.59 0 0 0 0 0.53105 1 26403 26403 12.241 2.0901 1 33749 15435 21515 21526 38705 38705 0.12637921011310027 QQKKLPTEKI 10 Unmodified _QQKKLPTEKI_ 0 0 0 L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|38|1|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|38|1|sense L1PREC2_dup2361|chr5:60071596-60076164:-|2.0822655261581504|0.0269825146028845|6.27|148.0|38|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 606.870361328125 2 606.869163 1211.72377 0.5099 0.00030944 0.36076 0.00021894 0.87066 0.00052838 606.8694636403875 107.88 0.22069 111.42 111.35 111.57 3.5382 56 23 3 0 0 0 0.52083 1 26347 26347 9.3831 0.63772 1 6733200 33750 15435 21515 21526 38706 38706 0.12637921011310027 QQKKRILG 8 Unmodified _QQKKRILG_ 0 0 0 L1PA6_dup1319|chr3:172659994-172666110:-|3.698000119457869|0.0745739510709367|5.63|151.0|106|2|sense;L1PA8_dup196|chr1:85771779-85775513:-|2.3237200395740185|0.0154120449011572|7.24|150.0|58|2|sense;L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|27|1|sense;L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|32|1|sense;L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|36|1|sense;L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|81|2|sense;L1PA6_dup4694|chr12:46249180-46252485:+|2.053686455050721|0.1107899444601809|4.21|151.0|74|3|sense;L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|43|1|sense;L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|36|1|sense;L1PA6_dup1767|chr4:165265609-165270909:-|2.1973395311177266|0.2057772026237083|3.42|151.0|127|3|sense;L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|94|2|sense;L1P1_dup1740|chr9:77970556-77971783:+|2.97562191985936|0.0655724027487687|5.5|151.0|30|3|sense;L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|142|3|sense;L1PA6_dup391|chr1:197573397-197576092:+|1.423818353085879|0.0336577535353406|5.4|151.0|61|3|sense L1PA6_dup1319|chr3:172659994-172666110:-|3.698000119457869|0.0745739510709367|5.63|151.0|106|2|sense L1PA6_dup1319|chr3:172659994-172666110:-|3.698000119457869|0.0745739510709367|5.63|151.0|106|2|sense MSMS UPN47_class_I_Rep_3 4 485.81256103515625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 42.784 1 46.023 45.523 46.523 3.2394 0 0 0 0.40746 1 8813 8813 0.69038 0 1 33751 13471 21516 21527 38707 38707 0.12232861671009232 QQKKRILI 8 Unmodified _QQKKRILI_ 0 0 0 L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|74|3|sense L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|74|3|sense L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|74|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.841552734375 2 513.842751 1025.67095 -0.51783 -0.00026608 0.33835 0.00017386 -0.17949 -9.2227E-05 513.8429449626259 19.196 0.6809 22.547 22.111 22.792 3.3514 91 69 2 0 0 0 0.82752 1 1763 1763 2.3027 0 1 39277 33752 14669 21517 21528 38708 38708 0.15914007739183944 QQKKVKLLL 9 Unmodified _QQKKVKLLL_ 0 0 0 REV__L1PA16_dup9871|chr11:14604568-14605386:-|1.83621095379192|0.1388112857828223|3.73|150.0|18|3|sense REV__L1PA16_dup9871|chr11:14604568-14605386:-|1.83621095379192|0.1388112857828223|3.73|150.0|18|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 548.8348388671875 2 549.373884 1096.73321 0.48928 0.0002688 0.34157 0.00018765 0.83085 0.00045645 549.3738241707302 108.7 0.18712 112.37 112.23 112.42 3.6746 10 9 2 0 0 0 0.12281 1 25776 25776 4.3292 0.38484 1 1671600 + 33753 29437 21518 21529 38709 38709 0.18871734087520053 QQKLGGSKHY 10 Unmodified _QQKLGGSKHY_ 0 0 0 REV__MLT1C_dup9098|chr8:65826703-65827132:-|1.0015664908719888|0.0948285336952608|3.4|151.0|12|1|anti-sense REV__MLT1C_dup9098|chr8:65826703-65827132:-|1.0015664908719888|0.0948285336952608|3.4|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7905883789062 2 573.306729 1144.59891 NaN NaN NaN NaN NaN NaN NaN 94.069 1 97.805 97.305 98.305 3.736 0 0 0 0.53105 1 23382 23382 1.6526 0.85899 1 + 33754 31658 21519 21530 38710 38710 0.03239048594809901 QQKLVVFVF 9 Unmodified _QQKLVVFVF_ 0 0 0 nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12 nc|ENSG00000174844|Q6ZR08|DNAH12 nc|ENSG00000174844|Q6ZR08|DNAH12 MSMS UPN48_class_I_Rep_3 7 554.3297119140625 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 110.96 1 114.63 114.13 115.13 3.6654 0 0 0 0.38478 1 26325 26325 4.3292 0.73274 1 33755 4695 21520 21531 38711 38711 0.09975783270760985 QQKNVLEKLL 10 Unmodified _QQKNVLEKLL_ 0 0 0 L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 607.3696899414062 2 606.869163 1211.72377 0.41817 0.00025377 0.14786 8.9729E-05 0.56602 0.0003435 606.869130024349 107.88 0.3801 111.51 111.42 111.8 3.6313 87 33 4 0 0 0 0.52562 2 26026 26026;26078 8.7454 0 1 16666000 33756 13456 21521 21532 38712;38713 38712 0.12637921011332764 QQKNVLEKLL 10 Unmodified _QQKNVLEKLL_ 0 0 0 L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 607.3696899414062 2 606.869163 1211.72377 0.41817 0.00025377 0.14786 8.9729E-05 0.56602 0.0003435 606.869130024349 107.88 0.3801 111.51 111.42 111.8 3.6313 87 33 4 0 0 0 0.84575 1 26026 26026 8.7454 0 1 16666000 33757 13456 21521 21532 38714 38714 0.12637921011332764 QQKNVLEKLL 10 Unmodified _QQKNVLEKLL_ 0 0 0 L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.8694458007812 2 606.869163 1211.72377 0.4884 0.00029639 0.19981 0.00012126 0.68821 0.00041765 606.8692015650404 107.84 0.15845 111.51 111.43 111.59 3.6783 30 15 3 0 0 0 0.52562 1 25517 25517 8.7454 0 1 13617000 33758 13456 21521 21532 38715 38715 0.12637921011332764 QQKNVLEKLL 10 Unmodified _QQKNVLEKLL_ 0 0 0 L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 606.869163 1211.72377 0.4884 0.00029639 0.19981 0.00012126 0.68821 0.00041765 606.8692015650404 107.84 0.15845 111.51 111.43 111.59 3.6783 -0.083993 -2.9807E-05 NaN 8.7454 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 13617000 33759 13456 21521 21532 0.12637921011332764 QQKNVLEKLL 10 Unmodified _QQKNVLEKLL_ 0 0 0 L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense L1MEi_dup4536|chr16:70412010-70412361:-|1.145017316446204|0.00982003804732|6.87|151.0|13|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 606.869163 1211.72377 0.55237 0.00033522 0.45034 0.0002733 1.0027 0.00060851 606.8696810467367 108 0.080879 111.68 111.67 111.75 3.6813 0.083993 0.00027428 NaN 8.7454 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1345300 33760 13456 21521 21532 0.12637921011332764 QQKPLQQK 8 Unmodified _QQKPLQQK_ 0 0 0 L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.29290771484375 2 499.293091 996.571629 0.19392 9.6823E-05 0.17239 8.6072E-05 0.36631 0.0001829 499.29314926813237 88.94 0.36899 92.563 92.363 92.732 3.6229 63 44 2 0 0 0 0.82752 1 21314 21314 2.3027 0 1 85685 33761 13997 21522 21533 38716 38716 0.07320565054430972 QQKPLQQK 8 Unmodified _QQKPLQQK_ 0 0 0 L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense MSMS UPN48_class_I_Rep_1 5 499.2923583984375 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 88.126 1 91.749 91.249 92.249 3.6229 0 0 0 0.40625 1 21135 21135 2.3027 0 1 33762 13997 21522 21533 38717 38717 0.07320565054430972 QQKPLQQK 8 Unmodified _QQKPLQQK_ 0 0 0 L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense L1PA15_dup937|chr2:148431392-148435868:-|1.368120557168667|0.082774065979776|4.05|151.0|134|3|sense MSMS UPN48_class_I_Rep_1 5 499.2942199707031 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 89.197 1 92.822 92.322 93.322 3.6255 0 0 0 0.40625 1 21411 21411 2.3027 0 1 33763 13997 21522 21533 38718 38718 0.07320565054430972 QQKPLSQPK 9 Unmodified _QQKPLSQPK_ 0 0 0 REV__HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|7|1|sense REV__HERVH-int_dup5196|chr16:8842114-8843831:-|2.022476136860241|0.253543749839564|3.0|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.30615234375 2 527.306198 1052.59784 0.30317 0.00015986 0.11049 5.826E-05 0.41366 0.00021812 527.3061564814957 98.179 0.28542 101.79 101.56 101.84 3.6065 49 32 2 0 0 0 0.49026 1 23637 23637 1.6526 1.6526 1 115300 + 33764 23686 21523 21534 38719 38719 0.07364834225904815 QQKRLKAA 8 Unmodified _QQKRLKAA_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;ENST00000472767.5_1_2:42922919-42924972:+|nuORF;ENST00000475383.5_1_2:42922919-42935079:+|nuORF;nc|ENSG00000182979|Q13330-2|MTA1;nc|ENSG00000149480|O94776-2|MTA2;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1 ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 89.435 1 92.828 92.328 93.328 3.3931 0 0 0 0.40738 1 22423 22423 0.79363 0 1 33765 3542 21524 21535 38720 38720 0.1039228863688777 QQLEVIQL 8 Unmodified _QQLEVIQL_ 0 0 0 REV__ENST00000512413.1_1_5:115357396-115361812:+|nuORF REV__ENST00000512413.1_1_5:115357396-115361812:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.782470703125 2 485.782025 969.549496 NaN NaN NaN NaN NaN NaN NaN 78.26 1 81.603 81.103 82.103 3.3428 0 0 0 0.40331 1 19437 19437 6.2058 0 1 + 33766 20462 21525 21536 38721 38721 0.06350340586004677 QQLIGHSAF 9 Unmodified _QQLIGHSAF_ 0 0 0 REV__ENST00000261655.8_1_12:130882112-130882280:-|nuORF REV__ENST00000261655.8_1_12:130882112-130882280:-|nuORF MSMS UPN48_class_I_Rep_3 7 500.7975769042969 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 35.805 1 39.471 38.971 39.971 3.6667 0 0 0 0.39518 1 5853 5853 1.8442 0 1 + 33767 21561 21526 21537 38722 38722 0.014003031290030776 QQLKKAQYL 9 Unmodified _QQLKKAQYL_ 0 0 0 REV__L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|23|2|sense REV__L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3284912109375 2 560.329673 1118.64479 0.51698 0.00028968 -1.285 -0.00072002 -0.76802 -0.00043035 560.3285203832203 53.938 0.65622 57.257 56.972 57.628 3.3187 64 40 2 0 0 0 0.41259 1 12086 12086 7.2892 1.0834 1 97130 + 33768 25416 21527 21538 38723 38723 0.09021693777026485 QQLKKAQYL 9 Unmodified _QQLKKAQYL_ 0 0 0 REV__L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|23|2|sense REV__L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 560.3297729492188 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 54.036 1 57.222 56.722 57.722 3.1856 0 0 0 0.28335 1 12237 12237 7.9102 0 1 + 33769 25416 21527 21538 38724 38724 0.09021693777026485 QQLKKEVT 8 Unmodified _QQLKKEVT_ 0 0 0 REV__L1MB3_dup12291|chr13:21318373-21319017:+|1.0969861595837391|0.0086755003373138|6.98|151.0|21|3|sense REV__L1MB3_dup12291|chr13:21318373-21319017:+|1.0969861595837391|0.0086755003373138|6.98|151.0|21|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.2872314453125 2 487.287474 972.560395 0.0081885 3.9902E-06 -0.19954 -9.7235E-05 -0.19135 -9.3245E-05 487.28735718275624 29.157 0.77298 29.157 28.84 29.613 0 136 66 3 0 0 0 0.82752 1 4510 4510 2.0598 0 1 168500 + 33770 25808 21528 21539 38725 38725 0.0730174296027144 QQLLYGLI 8 Unmodified _QQLLYGLI_ 0 0 0 ENST00000483620.1_1_3:50402422-50403202:-|nuORF;nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2 ENST00000483620.1_1_3:50402422-50403202:-|nuORF ENST00000483620.1_1_3:50402422-50403202:-|nuORF MSMS UPN46_class_I_Rep_3 1 474.2822570800781 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 114.07 1 114.07 113.57 114.57 0 0 0 0 0.40746 1 28184 28184 0.69038 0 1 33771 735 21529 21540 38726 38726 0.07335545936962262 QQLQKSTK 8 Unmodified _QQLQKSTK_ 0 0 0 REV__L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|107|3|sense REV__L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|107|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.7767028808594 2 480.777274 959.539994 -0.66276 -0.00031864 0.21804 0.00010483 -0.44473 -0.00021382 480.77738151023016 21.727 0.50122 25.076 24.842 25.343 3.3496 81 48 2 0 0 0 0.82752 1 2415 2415 2.5775 0 1 63502 + 33772 29087 21530 21541 38727 38727 0.05860572300480271 QQLQSQAF 8 Unmodified _QQLQSQAF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|10|1|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|10|1|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 475.2545166015625 2 475.240524 948.466495 NaN NaN NaN NaN NaN NaN NaN 36.452 1 36.452 35.952 36.952 0 0 0 0 0.37214 1 6759 6759 16.942 0 1 33773 11960 21531 21542 38728 38728 -0.009799761420026698 QQLQSQAF 8 Unmodified _QQLQSQAF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|10|1|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|10|1|sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 475.25445556640625 2 475.240524 948.466495 NaN NaN NaN NaN NaN NaN NaN 36.576 1 36.576 36.076 37.076 0 0 0 0 0.3903 1 6794 6794 11.64 0 1 33774 11960 21531 21542 38729 38729 -0.009799761420026698 QQLRKLLPRVA 11 Unmodified _QQLRKLLPRVA_ 0 0 0 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 MSMS UPN48_class_I_Rep_1 5 441.297607421875 3 441.285739 1320.83539 NaN NaN NaN NaN NaN NaN NaN 51.892 1 55.415 54.915 55.915 3.5227 0 0 0 0.38417 1 10748 10748 1.3296 0.63198 1 + 33775 18486 21532 21543 38730 38730 0.18780400159107558 QQLVPCFQVT 10 Unmodified _QQLVPCFQVT_ 0 0 0 ENSG00000186919|ENST00000334586|ZACN ENSG00000186919|ENST00000334586|ZACN ENSG00000186919|ENST00000334586|ZACN MSMS UPN48_class_I_Rep_2 6 581.797119140625 2 581.799891 1161.58523 NaN NaN NaN NaN NaN NaN NaN 66.563 1 70.05 69.55 70.55 3.4866 0 0 0 0.53105 1 15217 15217 5.7319 0.43497 1 33776 5175 21533 21544 38731 38731 0.010900547713390552 QQNNMAWP 8 Unmodified _QQNNMAWP_ 0 0 0 REV__L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|9|1|sense REV__L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 494.7190246582031 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 31.339 1 34.98 34.48 35.48 3.641 0 0 0 0.40738 1 4702 4702 0.79363 0 1 + 33777 24117 21534 21545 38732 38732 -0.07096489190939792 QQNPLCFM 8 Unmodified _QQNPLCFM_ 0 0 0 L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|139|3|sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|139|3|sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|139|3|sense MSMS UPN48_class_I_Rep_3 7 490.71875 2 490.720055 979.425558 NaN NaN NaN NaN NaN NaN NaN 76.548 1 80.131 79.631 80.631 3.5831 0 0 0 0.40746 1 18030 18030 0.69038 0 1 33778 15176 21535 21546 38733 38733 -0.06497776777473518 QQNQSQVF 8 Unmodified _QQNQSQVF_ 0 0 0 REV__INTS5|p.R767Q|1|0.11|ENSG00000185085|chr11:62647780-62647780|C/T|missense_variant REV__INTS5|p.R767Q|1|0.11|ENSG00000185085|chr11:62647780-62647780|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_2 3 489.7354431152344 2 489.735606 977.456658 -0.11673 -5.7167E-05 0.32404 0.00015869 0.20731 0.00010153 489.7354879634538 31.171 0.76368 34.641 34.269 35.032 3.4691 94 64 2 0 0 0 0.82752 1 5197 5197 2.5775 0 1 174160 + 33779 23985 21536 21547 38734 38734 -0.032971641473750424 QQNRALIR 8 Unmodified _QQNRALIR_ 0 0 0 L1M1_dup5529|chrX:79403160-79406137:+|1.3918079833398227|0.0027899799979401|8.96|149.0|8|1|sense L1M1_dup5529|chrX:79403160-79406137:+|1.3918079833398227|0.0027899799979401|8.96|149.0|8|1|sense L1M1_dup5529|chrX:79403160-79406137:+|1.3918079833398227|0.0027899799979401|8.96|149.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 499.79730224609375 2 499.796332 997.578111 NaN NaN NaN NaN NaN NaN NaN 117.66 1 121.32 120.82 121.82 3.6627 0 0 0 0.40746 1 28205 28205 0.69038 0 1 33780 8600 21537 21548 38735 38735 0.07922503005806902 QQNRLLAR 8 Unmodified _QQNRLLAR_ 0 0 0 L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|99|2|sense;L1PA7_dup9859|chr11:73061020-73067491:+|21.46439024186142|0.1239268404208669|7.44|151.0|89|2|sense;L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|104|3|sense;L1PA7_dup1973|chr3:14188810-14194405:-|1.001407595561557|0.224901178663809|2.15|150.0|31|1|sense;L1PA6_dup573|chr2:61036000-61040733:+|3.333365246754994|0.1797749692126194|4.21|151.0|22|1|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|48|1|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|99|2|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|99|2|sense MSMS UPN48_class_I_Rep_3 7 500.28118896484375 2 499.796332 997.578111 NaN NaN NaN NaN NaN NaN NaN 58.046 1 61.578 61.078 62.078 3.5317 0 0 0 0.4044 1 12543 12543 4.756 0 1 33781 14593 21538 21549 38736 38736 0.07922503005795534 QQNVFLVK 8 Unmodified _QQNVFLVK_ 0 0 0 LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|100|3|sense LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|100|3|sense LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|100|3|sense MSMS UPN47_class_I_Rep_1 2 488.2852783203125 2 488.284734 974.554916 NaN NaN NaN NaN NaN NaN NaN 85.786 1 89.401 88.901 89.901 3.6153 0 0 0 0.40625 1 21422 21422 2.3027 0 1 33782 15605 21539 21550 38737 38737 0.06662064168483539 QQPKAVHGV 9 Unmodified _QQPKAVHGV_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|334|2|anti-sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|334|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.2719421386719 2 482.272158 962.529764 -0.0718 -3.4627E-05 -0.13533 -6.5266E-05 -0.20713 -9.9893E-05 482.27200059433846 26.245 0.86844 26.245 25.804 26.672 0 133 76 2 0 0 0 0.48643 1 3613 3613 2.0598 0.21551 1 137810 + 33783 23581 21540 21551 38738 38738 0.04700009365899405 QQPRVKLL 8 Unmodified _QQPRVKLL_ 0 0 0 REV__CON__Q3T052 REV__CON__Q3T052 MULTI-MSMS UPN47_class_I_Rep_1 2 491.8150634765625 2 491.313826 980.613099 -0.31931 -0.00015688 0.33677 0.00016546 0.017461 8.5787E-06 491.3139001186543 23.784 1.0582 27.513 27.128 28.186 3.7298 180 88 3 0 0 0 0.82752 2 2896 2896;3155 2.3027 0 1 331450 + + 33784 17498 21541 21552 38739;38740 38739 0.1220174581376341 QQPRVKLL 8 Unmodified _QQPRVKLL_ 0 0 0 REV__CON__Q3T052 REV__CON__Q3T052 MULTI-MSMS UPN47_class_I_Rep_2 3 491.3132019042969 2 491.313826 980.613099 -0.10014 -4.9199E-05 0.03756 1.8454E-05 -0.062577 -3.0745E-05 491.31376583999923 24.107 1.0314 27.573 27.166 28.197 3.4655 201 89 3 0 0 0 0.82752 2 3041 3041;3307 4.756 0 1 295740 + + 33785 17498 21541 21552 38741;38742 38741 0.1220174581376341 QQQEEHRQ 8 Unmodified _QQQEEHRQ_ 0 0 0 nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP UPN47_class_I_Rep_1 2 541.7881469726562 2 541.752318 1081.49008 -0.092877 -5.0317E-05 -1.0017 -0.00054267 -1.0946 -0.00059298 541.7517882389573 14.65 0.29805 18.125 18.036 18.334 3.475 44 31 2 0 0 0 0.72333 1 653 653 0.69038 0 1 33309 33786 3607 21542 21553 38743 38743 -0.04740162375469481 QQQFHLLI 8 Unmodified _QQQFHLLI_ 0 0 0 REV__L1MB7_dup15649|chr12:25070098-25071013:-|3.017883191619162|0.063481129736589|5.57|151.0|40|1|anti-sense REV__L1MB7_dup15649|chr12:25070098-25071013:-|3.017883191619162|0.063481129736589|5.57|151.0|40|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7841796875 2 513.790184 1025.56581 NaN NaN NaN NaN NaN NaN NaN 23.095 1 26.656 26.156 27.156 3.5605 0 0 0 0.40604 1 2355 2355 2.5775 0 1 + 33787 26150 21543 21554 38744 38744 0.0540546654276568 QQQPQGMQL 9 Unmodified _QQQPQGMQL_ 0 0 0 REV__ENST00000498134.1_1_13:33528197-33528527:-|nuORF REV__ENST00000498134.1_1_13:33528197-33528527:-|nuORF MSMS UPN48_class_I_Rep_3 7 529.2576904296875 2 529.258391 1056.50223 NaN NaN NaN NaN NaN NaN NaN 91.706 1 95.57 95.07 96.07 3.8634 0 0 0 0.36505 1 21749 21749 7.2892 0.56607 1 + 33788 22676 21544 21555 38745 38745 -0.023762619566468857 QQQQLPVGK 9 Unmodified _QQQQLPVGK_ 0 0 0 ENST00000526510.5_1_11:67168691-67168991:-|nuORF ENST00000526510.5_1_11:67168691-67168991:-|nuORF ENST00000526510.5_1_11:67168691-67168991:-|nuORF MSMS UPN48_class_I_Rep_2 6 513.300537109375 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 106.6 1 110.29 109.79 110.79 3.6834 0 0 0 0.38639 1 25197 25197 3.9444 0.3479 1 33789 7261 21545 21556 38746 38746 0.055242611917947215 QQQQPQHAF 9 Unmodified _QQQQPQHAF_ 0 0 0 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-MSMS UPN46_class_I_Rep_3 1 556.2678833007812 2 556.267604 1110.52066 0.0753 4.1887E-05 -0.20136 -0.00011201 -0.12606 -7.0123E-05 556.2674077167082 26.011 0.63476 26.011 25.804 26.438 0 95 54 2 0 0 0 0.10817 4 3690 3616;3654;3690;3731 32.305 16.156 1 104760 33790 4112 21546 21557 38747;38748;38749;38750 38749 -0.030183839904339038 QQQRHQEE 8 Unmodified _QQQRHQEE_ 0 0 0 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 ENSG00000170122|ENST00000382500|FOXD4 MSMS UPN47_class_I_Rep_2 3 541.7515258789062 2 541.752318 1081.49008 NaN NaN NaN NaN NaN NaN NaN 31.639 1 35.108 34.608 35.608 3.4691 0 0 0 0.40604 1 5381 5381 2.5775 0.27475 1 33791 4454 21547 21558 38751 38751 -0.04740162375469481 QQRAEQLLA 9 Unmodified _QQRAEQLLA_ 0 0 0 REV__nc|ENSG00000112984|O95235-2|KIF20A REV__nc|ENSG00000112984|O95235-2|KIF20A MULTI-MSMS UPN48_class_I_Rep_2 6 528.7938842773438 2 528.793455 1055.57236 0.41749 0.00022076 -0.19822 -0.00010482 0.21927 0.00011595 528.7932275575378 31.271 0.37156 34.912 34.781 35.152 3.641 56 37 2 0 0 0 0.46869 1 4656 4656 3.9444 0 1 76942 + 33792 18493 21548 21559 38752 38752 0.04679359703482078 QQRDFQRE 8 Unmodified _QQRDFQRE_ 0 0 0 nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3 nc|ENSG00000105639|P52333-2|JAK3 nc|ENSG00000105639|P52333-2|JAK3 MULTI-SECPEP UPN47_class_I_Rep_3 4 553.72509765625 2 553.770511 1105.52647 0.45652 0.00025281 1.2856 0.00071194 1.7421 0.00096475 553.7711407502586 75.674 0.062836 78.931 78.892 78.955 3.2573 6 4 2 0 0 0 0.72333 1 18792 18792 18.135 0 1 23471 33793 1748 21549 21560 38753 38753 -0.0220728547874387 QQRFLHFL 8 Unmodified _QQRFLHFL_ 0 0 0 REV__ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|9|intron REV__ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|9|intron MSMS UPN46_class_I_Rep_3 1 544.530517578125 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 38.137 1 38.137 37.637 38.637 0 0 0 0 0.40738 1 7237 7237 0.79363 0 1 + 33794 19538 21550 21561 38754 38754 0.0524057515392542 QQRHWVAPGG 10 Unmodified _QQRHWVAPGG_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS UPN47_class_I_Rep_1 2 568.3017578125 2 568.291414 1134.56827 0.031716 1.8024E-05 -1.1636 -0.00066126 -1.1319 -0.00064324 568.2907816032504 42.979 0.55737 46.666 46.48 47.038 3.6875 67 38 2 0 0 0 0.56309 1 8880 8880 1.6526 0 1 75256 33795 4479 21551 21562 38755 38755 0.006373150004037598 QQRLCFKK 8 Unmodified _QQRLCFKK_ 0 0 0 AluSz_dup40525|chr7:102128715-102128993:+|1.0884462167608937|0.0050431869727607|7.75|151.0|8|2|sense AluSz_dup40525|chr7:102128715-102128993:+|1.0884462167608937|0.0050431869727607|7.75|151.0|8|2|sense AluSz_dup40525|chr7:102128715-102128993:+|1.0884462167608937|0.0050431869727607|7.75|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 525.7955322265625 2 525.797486 1049.58042 NaN NaN NaN NaN NaN NaN NaN 23.094 1 26.845 26.345 27.345 3.7507 0 0 0 0.40746 1 2468 2468 0.69038 0 1 33796 348 21552 21563 38756 38756 0.05761215419261134 QQRLGGLK 8 Unmodified _QQRLGGLK_ 0 0 0 REV__MLT1C_dup6191|chr5:131296323-131296770:-|1.693653237729995|0.0087143525088638|7.6|151.0|27|3|anti-sense REV__MLT1C_dup6191|chr5:131296323-131296770:-|1.693653237729995|0.0087143525088638|7.6|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_3 7 450.5226135253906 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 74.329 1 77.88 77.38 78.38 3.5505 0 0 0 0.40746 1 17413 17413 0.69038 0 1 + 33797 31650 21553 21564 38757 38757 0.08152313228538333 QQRLLFFT 8 Unmodified _QQRLLFFT_ 0 0 0 L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7968139648438 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.165 1 26.808 26.308 27.308 3.6432 0 0 0 0.40604 1 2480 2480 2.5775 0.27475 1 33798 9583 21554 21565 38758 38758 0.05773753059816045 QQRLLFFT 8 Unmodified _QQRLLFFT_ 0 0 0 L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7965087890625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 19.754 1 23.376 22.876 23.876 3.6215 0 0 0 0.40746 1 1553 1553 0.69038 0 1 33799 9583 21554 21565 38759 38759 0.05773753059816045 QQRNKYIFT 9 Unmodified _QQRNKYIFT_ 0 0 0 REV__MER58A_dup11727|chr17:57418014-57418228:-|1.0287564948360783|0.0080141776935337|7.0|151.0|11|1|anti-sense REV__MER58A_dup11727|chr17:57418014-57418228:-|1.0287564948360783|0.0080141776935337|7.0|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_2 6 599.3207397460938 2 599.32238 1196.63021 NaN NaN NaN NaN NaN NaN NaN 65.97 1 69.457 68.957 69.957 3.4866 0 0 0 0.39518 1 15036 15036 1.8442 0 1 + 33800 31460 21555 21566 38760 38760 0.03975621628865156 QQRQFDFLF 9 Unmodified _QQRQFDFLF_ 0 0 0 L1PA7_dup10414|chr12:62364558-62367212:-|3.648484102444357|0.1445546554145523|4.66|151.0|130|2|anti-sense L1PA7_dup10414|chr12:62364558-62367212:-|3.648484102444357|0.1445546554145523|4.66|151.0|130|2|anti-sense L1PA7_dup10414|chr12:62364558-62367212:-|3.648484102444357|0.1445546554145523|4.66|151.0|130|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 614.8098754882812 2 614.809105 1227.60366 0.48675 0.00029926 -0.46068 -0.00028323 0.026074 1.6031E-05 614.8085856278884 32.698 0.3964 36.348 36.15 36.546 3.6497 68 47 2 0 0 0 0.48846 1 5068 5068 1.8442 0.19162 1 87399 33801 14702 21556 21567 38761 38761 -0.001040672624412764 QQSKSDEFFG 10 Unmodified _QQSKSDEFFG_ 0 0 0 Tigger1_dup4453|chr5:143352551-143354664:-|1.744585362131287|0.0970569591578268|4.17|151.0|96|2|anti-sense Tigger1_dup4453|chr5:143352551-143354664:-|1.744585362131287|0.0970569591578268|4.17|151.0|96|2|anti-sense Tigger1_dup4453|chr5:143352551-143354664:-|1.744585362131287|0.0970569591578268|4.17|151.0|96|2|anti-sense MSMS UPN48_class_I_Rep_1 5 586.767822265625 2 586.76456 1171.51457 NaN NaN NaN NaN NaN NaN NaN 18.758 1 22.29 21.79 22.79 3.5313 0 0 0 0.53105 1 1315 1315 1.4819 0.68827 1 33802 33098 21557 21568 38762 38762 -0.06432947012626755 QQSRLYHFW 9 Unmodified _QQSRLYHFW_ 0 0 0 REV__ENSG00000122176|ENST00000354955|FMOD REV__ENSG00000122176|ENST00000354955|FMOD MSMS UPN46_class_I_Rep_3 1 632.6405029296875 2 632.814722 1263.61489 NaN NaN NaN NaN NaN NaN NaN 53.626 1 53.626 53.126 54.126 0 0 0 0 0.40038 1 11552 11552 0.6015 0 1 + 33803 18742 21558 21569 38763 38763 -0.006372451682864266 QQTDFLDIY 9 Unmodified _QQTDFLDIY_ 0 0 0 nc|ENSG00000050426|Q6P1Q0-4|LETMD1;nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1;ENST00000552433.1_1_12:51449621-51449846:+|nuORF nc|ENSG00000050426|Q6P1Q0-4|LETMD1 nc|ENSG00000050426|Q6P1Q0-4|LETMD1 MULTI-SECPEP UPN47_class_I_Rep_1 2 572.287841796875 2 571.771854 1141.52915 0.34666 0.00019821 0.09871 5.644E-05 0.44537 0.00025465 571.7714343201685 64.468 0.060005 67.823 67.804 67.864 3.3557 9 5 2 0 0 0 0.099161 1 15316 15316 20.415 0 1 64044 33804 914 21559 21570 38764 38764 -0.03594874864461417 QQTDFLDIY 9 Unmodified _QQTDFLDIY_ 0 0 0 nc|ENSG00000050426|Q6P1Q0-4|LETMD1;nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1;ENST00000552433.1_1_12:51449621-51449846:+|nuORF nc|ENSG00000050426|Q6P1Q0-4|LETMD1 nc|ENSG00000050426|Q6P1Q0-4|LETMD1 MULTI-MSMS UPN47_class_I_Rep_3 4 572.287841796875 2 571.771854 1141.52915 0.43314 0.00024765 0.32459 0.00018559 0.75773 0.00043325 571.7713892374123 64.687 0.32973 67.867 67.776 68.105 3.1795 39 26 2 0 0 0 0.14216 1 15509 15509 26.268 0 1 61457 33805 914 21559 21570 38765 38765 -0.03594874864461417 QQTDKLHL 8 Unmodified _QQTDKLHL_ 0 0 0 REV__L1PB1_dup7209|chr9:92555529-92557639:-|2.148239495833636|0.0157114075569094|7.1|151.0|34|2|sense REV__L1PB1_dup7209|chr9:92555529-92557639:-|2.148239495833636|0.0157114075569094|7.1|151.0|34|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 491.7697448730469 2 491.769448 981.524344 -0.27642 -0.00013593 0.033402 1.6426E-05 -0.24301 -0.00011951 491.769320993983 39.642 0.45806 42.88 42.593 43.051 3.238 47 31 2 0 0 0 0.82752 1 7811 7811 6.7232 0 1 63694 + 33806 30485 21560 21571 38766 38766 0.03284285783422547 QQVLLKLI 8 Unmodified _QQVLLKLI_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MSMS UPN47_class_I_Rep_3 4 477.8221130371094 2 477.820953 953.627353 NaN NaN NaN NaN NaN NaN NaN 41.536 1 44.773 44.273 45.273 3.2372 0 0 0 0.40746 1 8434 8434 0.69038 0 1 + 33807 19666 21561 21572 38767 38767 0.14868398242049352 QQVLVRLWR 9 Unmodified _QQVLVRLWR_ 0 0 0 L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|91|2|sense L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|91|2|sense L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|91|2|sense MSMS UPN46_class_I_Rep_3 1 599.3639526367188 2 599.364382 1196.71421 NaN NaN NaN NaN NaN NaN NaN 78.591 1 78.591 78.091 79.091 0 0 0 0 0.40038 1 18414 18414 0.6015 0 1 33808 13653 21562 21573 38768 38768 0.12372197516447159 QQVPVNQVF 9 Unmodified _QQVPVNQVF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MSMS UPN46_class_I_Rep_3 1 529.784423828125 2 529.785099 1057.55564 NaN NaN NaN NaN NaN NaN NaN 60.022 1 60.022 59.522 60.522 0 0 0 0 0.2088 1 13297 13297 15.847 3.6065 1 33809 1491 21563 21574 38769 38769 0.029168588175252808 QQVSGKVVI 9 Unmodified _QQVSGKVVI_ 0 0 0 REV__L1PA5_dup105|chr1:50886383-50892493:-|3.762238010108305|0.0449041682174472|6.39|151.0|160|3|sense REV__L1PA5_dup105|chr1:50886383-50892493:-|3.762238010108305|0.0449041682174472|6.39|151.0|160|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.2900695800781 2 479.290017 956.565481 0.067909 3.2548E-05 0.050202 2.4061E-05 0.11811 5.6609E-05 479.28994695310905 55.003 0.93938 58.181 57.813 58.753 3.1779 125 54 3 0 0 0 0.30034 1 12544 12544 13.906 0.86358 1 364480 + 33810 29705 21564 21575 38770 38770 0.08546046822914377 QQWPYLQSL 9 Unmodified _QQWPYLQSL_ 0 0 0 REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|57|3|sense REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|57|3|sense MSMS UPN48_class_I_Rep_1 5 581.7987670898438 2 581.798206 1161.58186 NaN NaN NaN NaN NaN NaN NaN 66.947 1 70.399 69.899 70.899 3.4516 0 0 0 0.38784 1 15347 15347 3.5965 0 1 + 33811 27377 21565 21576 38771 38771 0.007531279890145015 QQWQFGER 8 Unmodified _QQWQFGER_ 0 0 0 REV__L1M2_dup7324|chr13:49164871-49166809:-|1.8632098958411731|0.3999969272436301|2.22|151.0|86|2|anti-sense REV__L1M2_dup7324|chr13:49164871-49166809:-|1.8632098958411731|0.3999969272436301|2.22|151.0|86|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 539.75732421875 2 539.756872 1077.49919 -0.13889 -7.4968E-05 -0.44292 -0.00023907 -0.58181 -0.00031404 539.7565550241186 19.184 0.48392 19.184 18.938 19.422 0 89 55 2 0 0 0 0.82752 2 1738 1738;1830 2.0598 1.2661 1 93880 + 33812 24233 21566 21577 38772;38773 38772 -0.036457690191582515 QQWRAPELF 9 Unmodified _QQWRAPELF_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|65|3|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|65|3|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|65|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.80419921875 2 587.803823 1173.59309 0.41928 0.00024646 0.26827 0.00015769 0.68756 0.00040415 587.8039232327768 43.519 1.3731 47.029 46.637 48.01 3.5103 240 108 3 0 0 0 0.26948 3 8131 8091;8131;8322 15.847 1.5574 1 796830 33813 9020 21567 21578 38774;38775;38776 38775 0.013239500831332407 QQWRAPELF 9 Unmodified _QQWRAPELF_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|65|3|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|65|3|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|65|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.8042602539062 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.46869 2 8233 8233;8279 3.9444 0 1 966840 33814 9020 21567 21578 38777;38778 38777 0.013239500831332407 QQYISNTYIF 10 Unmodified _QQYISNTYIF_ 0 0 0 ENST00000217515.10_2_18:54291621-54293598:-|nuORF ENST00000217515.10_2_18:54291621-54293598:-|nuORF ENST00000217515.10_2_18:54291621-54293598:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 638.8151245117188 2 638.814053 1275.61355 0.47398 0.00030279 0.00086905 5.5516E-07 0.47485 0.00030334 638.8139040147606 54.321 0.48643 57.836 57.635 58.121 3.5143 57 34 3 0 0 0 0.56118 1 11574 11574 2.9952 0.49676 1 146320 33815 5867 21568 21579 38779 38779 -0.013229240477357962 QQYPDTKD 8 Unmodified _QQYPDTKD_ 0 0 0 L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|63|2|sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|63|2|sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|63|2|sense MSMS UPN47_class_I_Rep_1 2 497.7646179199219 2 497.727446 993.44034 NaN NaN NaN NaN NaN NaN NaN 28.232 1 31.998 31.498 32.498 3.7662 0 0 0 0.40738 1 4318 4318 0.79363 0 1 33816 9594 21569 21580 38780 38780 -0.05664290104152769 QRAETSEPD 9 Unmodified _QRAETSEPD_ 0 0 0 REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.7335815429688 2 516.73326 1031.45197 NaN NaN NaN NaN NaN NaN NaN 22.193 1 25.617 25.117 26.117 3.4241 0 0 0 0.39598 1 2593 2593 1.6526 0 1 + 33817 22865 21570 21581 38781 38781 -0.06250093080802799 QRAKIIQWW 9 Unmodified _QRAKIIQWW_ 0 0 0 ENST00000490903.5_1_13:53035217-53035268:+|nuORF ENST00000490903.5_1_13:53035217-53035268:+|nuORF ENST00000490903.5_1_13:53035217-53035268:+|nuORF MSMS UPN48_class_I_Rep_2 6 614.8514404296875 2 614.851107 1227.68766 NaN NaN NaN NaN NaN NaN NaN 29.553 1 33.185 32.685 33.685 3.6316 0 0 0 0.4007 1 4214 4214 0.52476 0 1 33818 7067 21571 21582 38782 38782 0.08292508625140727 QRALFPLP 8 Unmodified _QRALFPLP_ 0 0 0 ENST00000541337.5_1_5:139422034-139422808:-|nuORF ENST00000541337.5_1_5:139422034-139422808:-|nuORF ENST00000541337.5_1_5:139422034-139422808:-|nuORF MSMS UPN48_class_I_Rep_3 7 471.2716369628906 2 471.281995 940.549437 NaN NaN NaN NaN NaN NaN NaN 37.705 1 41.366 40.866 41.866 3.6614 0 0 0 0.40581 1 6387 6387 2.8892 0 1 33819 7355 21572 21583 38783 38783 0.07678385376641472 QRDEPEHI 8 Unmodified _QRDEPEHI_ 0 0 0 ENST00000417098.5_1_2:200233407-200246524:-|nuORF ENST00000417098.5_1_2:200233407-200246524:-|nuORF ENST00000417098.5_1_2:200233407-200246524:-|nuORF MSMS UPN47_class_I_Rep_3 4 512.2456665039062 2 512.246338 1022.47812 NaN NaN NaN NaN NaN NaN NaN 25.42 1 28.771 28.271 29.271 3.3509 0 0 0 0.40746 1 3571 3571 0.69038 0 1 33820 6658 21573 21584 38784 38784 -0.032217791186667455 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MULTI-MSMS UPN47_class_I_Rep_1 2 585.7928466796875 2 585.793121 1169.57169 0.29889 0.00017509 0.52899 0.00030988 0.82788 0.00048497 585.7926417709104 52.598 1.1019 56.157 55.752 56.854 3.5585 147 79 4 0 0 0 0.061943 6 11702 11660;11665;11702;11743;11786;11828 43.858 16.229 1 1547200 33821 5502 21574 21585 38785;38786;38787;38788;38789;38790 38787 -0.006314797362165336 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MULTI-MSMS UPN47_class_I_Rep_2 3 585.7928466796875 2 585.793121 1169.57169 0.51626 0.00030242 -0.06119 -3.5845E-05 0.45507 0.00026658 585.7925786370781 52.868 1.4109 56.194 55.806 57.217 3.3266 153 99 2 0 0 0 0.052902 5 11813 11767;11774;11813;11851;11890 47.749 16.229 1 1108400 33822 5502 21574 21585 38791;38792;38793;38794;38795 38793 -0.006314797362165336 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MSMS UPN47_class_I_Rep_3 4 585.7930908203125 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 52.9 1 56.094 55.594 56.594 3.1948 0 0 0 0.027878 1 11889 11889 47.749 13.347 1 33823 5502 21574 21585 38796 38796 -0.006314797362165336 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MSMS UPN47_class_I_Rep_3 4 585.792724609375 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.035 1 56.23 55.73 56.73 3.1948 0 0 0 0.023553 1 11931 11931 52.268 21.632 1 33824 5502 21574 21585 38797 38797 -0.006314797362165336 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MSMS UPN47_class_I_Rep_3 4 585.7928466796875 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.177 1 56.372 55.872 56.872 3.1948 0 0 0 0.031663 1 11975 11975 43.858 13.222 1 33825 5502 21574 21585 38798 38798 -0.006314797362165336 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MSMS UPN47_class_I_Rep_3 4 585.7932739257812 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.325 1 56.519 56.019 57.019 3.1948 0 0 0 0.072484 1 12020 12020 30.637 7.9003 1 33826 5502 21574 21585 38799 38799 -0.006314797362165336 QRDLLSEFY 9 Unmodified _QRDLLSEFY_ 0 0 0 ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-5|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 ENSG00000204130|ENST00000602465|RUFY2 MSMS UPN47_class_I_Rep_3 4 585.7933959960938 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 53.487 1 56.682 56.182 57.182 3.1948 0 0 0 0.29868 1 12070 12070 10.824 0.75 1 33827 5502 21574 21585 38800 38800 -0.006314797362165336 QRFGRRRRRFL 11 Unmodified _QRFGRRRRRFL_ 0 0 0 REV__ENSG00000184160|ENST00000330055|ADRA2C REV__ENSG00000184160|ENST00000330055|ADRA2C MSMS UPN48_class_I_Rep_2 6 516.6470947265625 3 516.646664 1546.91816 NaN NaN NaN NaN NaN NaN NaN 102.36 1 106.08 105.58 106.58 3.7252 0 0 0 0.38417 1 24245 24245 0.094841 0 1 + 33828 20810 21575 21586 38801 38801 0.16658154730475871 QRFQRPRR 8 Unmodified _QRFQRPRR_ 0 0 0 AluJb_dup122900|chr21:33404434-33404727:-|1.048068550495648|0.0855209304176347|3.62|151.0|2|1|sense AluJb_dup122900|chr21:33404434-33404727:-|1.048068550495648|0.0855209304176347|3.62|151.0|2|1|sense AluJb_dup122900|chr21:33404434-33404727:-|1.048068550495648|0.0855209304176347|3.62|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 572.3338012695312 2 572.333947 1142.65334 NaN NaN NaN NaN NaN NaN NaN 32.447 1 32.447 31.947 32.947 0 0 0 0 0.40625 1 5552 5552 2.3027 0 1 33829 31 21576 21587 38802 38802 0.08772105256889517 QRGDLIVEF 9 Unmodified _QRGDLIVEF_ 0 0 0 nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 nc|ENSG00000137094|O75953|DNAJB5 nc|ENSG00000137094|O75953|DNAJB5 MULTI-MSMS UPN47_class_I_Rep_2 3 538.7911987304688 2 538.790381 1075.56621 0.46808 0.0002522 -1.6932 -0.00091226 -1.2251 -0.00066006 538.790083726859 55.198 1.4163 58.508 57.779 59.195 3.3102 142 78 4 0 0 0 0.24936 1 12486 12486 17.113 2.2746 1 318790 33830 3007 21577 21588 38803 38803 0.03144841471953441 QRGHWKRRIQR 11 Unmodified _QRGHWKRRIQR_ 0 0 0 HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|222|2|anti-sense HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|222|2|anti-sense HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|222|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 507.2660827636719 3 507.630903 1519.87088 0.2709 0.00013752 -0.92218 -0.00046813 -0.65128 -0.00033061 507.9646888812858 48.313 0.02393 48.313 48.293 48.317 0 4 2 2 0 0 0 22.551 1 10052 10052 1.2148 0.70888 1 120360 33831 8163 21578 21589 38804 38804 0.13173875459483497 QRGILRQRVF 10 Unmodified _QRGILRQRVF_ 0 0 0 nc|ENSG00000004777|O14559-10|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33 nc|ENSG00000004777|O14559-10|ARHGAP33 nc|ENSG00000004777|O14559-10|ARHGAP33 MSMS UPN46_class_I_Rep_3 1 636.8871459960938 2 636.886013 1271.75747 NaN NaN NaN NaN NaN NaN NaN 37.043 1 37.043 36.543 37.543 0 0 0 0 0.53105 1 6926 6926 0.40072 0 1 33832 686 21579 21590 38805 38805 0.13246387293725093 QRGKGRSD 8 Unmodified _QRGKGRSD_ 0 0 0 REV__ENST00000504241.1_1_5:180622168-180622936:-|nuORF REV__ENST00000504241.1_1_5:180622168-180622936:-|nuORF MSMS UPN46_class_I_Rep_3 1 452.24066162109375 2 452.24139 902.468226 NaN NaN NaN NaN NaN NaN NaN 76.573 1 76.573 76.073 77.073 0 0 0 0 0.40625 1 17869 17869 2.3027 0 1 + 33833 22701 21580 21591 38806 38806 0.01309077666610392 QRGKGRSD 8 Unmodified _QRGKGRSD_ 0 0 0 REV__ENST00000504241.1_1_5:180622168-180622936:-|nuORF REV__ENST00000504241.1_1_5:180622168-180622936:-|nuORF MSMS UPN46_class_I_Rep_3 1 452.2408447265625 2 452.24139 902.468226 NaN NaN NaN NaN NaN NaN NaN 77.023 1 77.023 76.523 77.523 0 0 0 0 0.40625 1 17987 17987 2.3027 0 1 + 33834 22701 21580 21591 38807 38807 0.01309077666610392 QRGKPAVAL 9 Unmodified _QRGKPAVAL_ 0 0 0 REV__L1MB3_dup10754|chr11:628048-628757:-|1.456939088834208|0.3317360159454439|2.13|151.0|7|2|sense REV__L1MB3_dup10754|chr11:628048-628757:-|1.456939088834208|0.3317360159454439|2.13|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 470.28912353515625 2 470.290351 938.566149 -0.33238 -0.00015631 -0.16377 -7.702E-05 -0.49615 -0.00023333 470.2901136904635 22.522 0.8254 25.966 25.586 26.411 3.4447 148 79 2 0 0 0 0.48846 1 2758 2758 1.8442 1.8442 1 202350 + 33835 25798 21581 21592 38808 38808 0.09440886262598269 QRGQWGFP 8 Unmodified _QRGQWGFP_ 0 0 0 ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 MSMS UPN46_class_I_Rep_3 1 488.2428894042969 2 488.243401 974.472249 NaN NaN NaN NaN NaN NaN NaN 117.5 1 117.5 117 118 0 0 0 0 0.40604 1 29128 29128 2.5775 0 1 33836 4556 21582 21593 38809 38809 -0.016008328396765137 QRGVLRDG 8 Unmodified _QRGVLRDG_ 0 0 0 ENST00000467713.5_1_3:9982844-9985032:+|nuORF ENST00000467713.5_1_3:9982844-9985032:+|nuORF ENST00000467713.5_1_3:9982844-9985032:+|nuORF MSMS UPN48_class_I_Rep_2 6 450.75396728515625 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 102.03 1 105.76 105.26 106.26 3.7252 0 0 0 0.40404 1 24184 24184 5.2307 1.2863 1 33837 6910 21583 21594 38810 38810 0.03994552189033129 QRHNKKKRKFQ 11 Unmodified _QRHNKKKRKFQ_ 0 0 0 L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|110|3|sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|110|3|sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|110|3|sense MSMS UPN48_class_I_Rep_1 5 499.9692687988281 3 499.967292 1496.88005 NaN NaN NaN NaN NaN NaN NaN 33.551 1 37.071 36.571 37.571 3.5201 0 0 0 0.38417 1 5248 5248 0.094841 0.011491 1 33838 14860 21584 21595 38811 38811 0.15148224025142554 QRIFVYYH 8 Unmodified _QRIFVYYH_ 0 0 0 L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|60|1|anti-sense L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|60|1|anti-sense L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 563.2954711914062 2 563.295633 1124.57671 NaN NaN NaN NaN NaN NaN NaN 32.515 1 36.041 35.541 36.541 3.5266 0 0 0 0.40738 1 4955 4955 0.79363 0 1 33839 11540 21585 21596 38812 38812 0.01940868917017724 QRIHLFVLLC 10 Unmodified _QRIHLFVLLC_ 0 0 0 REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|301|3|anti-sense REV__HERVI-int_dup42|chr9:133032543-133037838:-|6.4393098430657245|0.1803841912816908|5.16|151.0|301|3|anti-sense MSMS UPN48_class_I_Rep_1 5 621.3645629882812 2 621.362993 1240.71143 NaN NaN NaN NaN NaN NaN NaN 112.56 1 116.19 115.69 116.69 3.6321 0 0 0 0.53105 1 27320 27320 0.45834 0 1 + 33840 23715 21586 21597 38813 38813 0.10070606067324661 QRIKKDHLLL 10 Unmodified _QRIKKDHLLL_ 0 0 0 REV__ERVL-int_dup6|chr1:41174282-41175035:+|2.7698507962340937|0.0355930474449567|6.28|151.0|57|3|anti-sense REV__ERVL-int_dup6|chr1:41174282-41175035:+|2.7698507962340937|0.0355930474449567|6.28|151.0|57|3|anti-sense MSMS UPN46_class_I_Rep_3 1 632.3995361328125 2 632.398422 1262.78229 NaN NaN NaN NaN NaN NaN NaN 56.081 1 56.081 55.581 56.581 0 0 0 0 0.53105 1 12216 12216 1.3295 0.87119 1 + 33841 23304 21587 21598 38814 38814 0.16141022376450564 QRILPTPLR 9 Unmodified _QRILPTPLR_ 0 0 0 L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|21|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|21|1|sense L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|21|1|sense MSMS UPN47_class_I_Rep_1 2 547.3330688476562 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 108.39 1 112.03 111.53 112.53 3.6355 0 0 0 0.29868 1 26627 26627 10.824 3.5347 1 33842 14239 21588 21599 38815 38815 0.13413106250845885 QRIVVEKYAMR 11 Unmodified _QRIVVEKYAMR_ 0 0 0 REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|4|1|sense REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 465.017822265625 3 464.930856 1391.77074 NaN NaN NaN NaN NaN NaN NaN 59.003 1 59.003 58.503 59.503 0 0 0 0 0.38417 1 13019 13019 1.2148 0.20126 1 + 33843 23503 21589 21600 38816 38816 0.09052457290795246 QRIWTRLFKHR 11 Unmodified _QRIWTRLFKHR_ 0 0 0 REV__L1MB8_dup12912|chr14:74107853-74109202:-|1.203034762829189|0.0380347453807136|4.98|150.0|20|2|sense REV__L1MB8_dup12912|chr14:74107853-74109202:-|1.203034762829189|0.0380347453807136|4.98|150.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 514.3027954101562 3 514.303904 1539.88988 NaN NaN NaN NaN NaN NaN NaN 66.219 1 69.727 69.227 70.227 3.5077 0 0 0 0.38417 1 15025 15025 0.094841 0 1 + 33844 26361 21590 21601 38817 38817 0.1415341203050957 QRKAITFLAAV 11 Unmodified _QRKAITFLAAV_ 0 0 0 REV__L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|9|2|sense REV__L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 406.9180908203125 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 104.64 1 108.4 107.9 108.9 3.7627 0 0 0 0.38417 1 25698 25698 1.3296 0 1 + 33845 25897 21591 21602 38818 38818 0.12949644593800258 QRKAITFLAAV 11 Unmodified _QRKAITFLAAV_ 0 0 0 REV__L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|9|2|sense REV__L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 406.5843505859375 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 103.33 1 107.04 106.54 107.54 3.7108 0 0 0 0.38417 1 24461 24461 2.8433 1.101 1 + 33846 25897 21591 21602 38819 38819 0.12949644593800258 QRKCEWSRY 9 Unmodified _QRKCEWSRY_ 0 0 0 Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|26|3|sense Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|26|3|sense Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|26|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 628.8041381835938 2 628.303664 1254.59277 0.47118 0.00029605 -0.59795 -0.0003757 -0.12677 -7.9648E-05 628.3033232897824 61.096 0.70853 64.362 63.993 64.702 3.2654 107 60 2 0 0 0 0.43153 1 14331 14331 6.2058 2.6093 1 216060 33847 33125 21592 21603 38820 38820 -0.024337929083685594 QRKEKAAI 8 Unmodified _QRKEKAAI_ 0 0 0 L1PA10_dup2190|chr5:78064914-78067071:+|2.4849983888566967|0.0349847043966828|6.15|151.0|10|1|sense;L1PA7_dup2613|chr3:152419725-152421236:+|13.057653960836232|0.1949154023939628|6.07|151.0|26|2|sense;L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|44|2|sense;L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|38|2|sense;L1PA7_dup6942|chr8:109214407-109219470:-|2.5621848410158155|0.1233702517209148|4.38|151.0|11|1|sense L1PA10_dup2190|chr5:78064914-78067071:+|2.4849983888566967|0.0349847043966828|6.15|151.0|10|1|sense L1PA10_dup2190|chr5:78064914-78067071:+|2.4849983888566967|0.0349847043966828|6.15|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 472.28814697265625 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.376 1 91.763 91.263 92.263 3.3873 0 0 0 0.40604 1 22165 22165 2.5775 0 1 33848 13529 21593 21604 38821 38821 0.08748582399982752 QRKGKHCI 8 Unmodified _QRKGKHCI_ 0 0 0 L1MA5A_dup382|chr2:61441862-61442898:+|1.1856334173488698|0.0087501122690707|7.08|150.0|25|2|sense L1MA5A_dup382|chr2:61441862-61442898:+|1.1856334173488698|0.0087501122690707|7.08|150.0|25|2|sense L1MA5A_dup382|chr2:61441862-61442898:+|1.1856334173488698|0.0087501122690707|7.08|150.0|25|2|sense MSMS UPN48_class_I_Rep_3 7 485.2740478515625 2 485.274178 968.533803 NaN NaN NaN NaN NaN NaN NaN 66.506 1 70.013 69.513 70.513 3.5077 0 0 0 0.40625 1 15110 15110 2.3027 0 1 33849 9950 21594 21605 38822 38822 0.04827775587943961 QRKICIPL 8 Unmodified _QRKICIPL_ 0 0 0 Kanga1c_dup47|chr1:184931300-184931906:+|1.1740433285785317|0.0229678554184635|5.68|151.0|42|3|anti-sense Kanga1c_dup47|chr1:184931300-184931906:+|1.1740433285785317|0.0229678554184635|5.68|151.0|42|3|anti-sense Kanga1c_dup47|chr1:184931300-184931906:+|1.1740433285785317|0.0229678554184635|5.68|151.0|42|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.7717590332031 2 485.796955 969.579357 NaN NaN NaN NaN NaN NaN NaN 35.749 1 39.259 38.759 39.759 3.5101 0 0 0 0.40581 1 5888 5888 2.8892 0 1 33850 8468 21595 21606 38823 38823 0.09335001050328628 QRKIHRHL 8 Unmodified _QRKIHRHL_ 0 0 0 REV__ENSG00000184828|ENST00000590800|ZBTB7C REV__ENSG00000184828|ENST00000590800|ZBTB7C MSMS UPN48_class_I_Rep_2 6 544.3326416015625 2 544.333416 1086.65228 NaN NaN NaN NaN NaN NaN NaN 84.535 1 88.229 87.729 88.729 3.6937 0 0 0 0.40746 1 20116 20116 0.69038 0 1 + 33851 20829 21596 21607 38824 38824 0.11241890887959016 QRKIHRHL 8 Unmodified _QRKIHRHL_ 0 0 0 REV__ENSG00000184828|ENST00000590800|ZBTB7C REV__ENSG00000184828|ENST00000590800|ZBTB7C MSMS UPN48_class_I_Rep_2 6 544.3327026367188 2 544.333416 1086.65228 NaN NaN NaN NaN NaN NaN NaN 84.763 1 88.456 87.956 88.956 3.6937 0 0 0 0.40746 1 20166 20166 0.69038 0 1 + 33852 20829 21596 21607 38825 38825 0.11241890887959016 QRKKKKKKSV 10 Unmodified _QRKKKKKKSV_ 0 0 0 REV__AluSz6_dup32715|chr12:104460382-104460691:+|2.5415694157534747|0.0141831729501157|7.49|151.0|6|2|sense REV__AluSz6_dup32715|chr12:104460382-104460691:+|2.5415694157534747|0.0141831729501157|7.49|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 629.8533935546875 2 629.427513 1256.84047 NaN NaN NaN NaN NaN NaN NaN 67.083 1 70.579 70.079 71.079 3.4964 0 0 0 0.53105 1 15376 15376 1.4819 0 1 + 33853 17088 21597 21608 38826 38826 0.22232704021735117 QRKKQAAI 8 Unmodified _QRKKQAAI_ 0 0 0 L1PA7_dup1973|chr3:14188810-14194405:-|1.001407595561557|0.224901178663809|2.15|150.0|68|2|sense;L1PA7_dup1254|chr2:99129770-99135377:-|1.1426404863493416|0.2891141190467196|1.98|151.0|62|2|sense;L1PA7_dup304|chr1:92530205-92535921:+|1.633741213489816|0.278375664478837|2.55|151.0|44|2|sense;L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|13|1|sense;L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|8|1|sense;L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|141|3|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|13|1|sense;L1PA7_dup12489|chr18:79081663-79083859:-|2.254214281777461|0.0258493868393302|6.45|151.0|56|3|sense;L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|99|3|sense L1PA7_dup1973|chr3:14188810-14194405:-|1.001407595561557|0.224901178663809|2.15|150.0|68|2|sense L1PA7_dup1973|chr3:14188810-14194405:-|1.001407595561557|0.224901178663809|2.15|150.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 471.796142578125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 87.622 1 91.259 90.759 91.759 3.6372 0 0 0 0.39819 1 21899 21899 8.5933 1.304 1 33854 13599 21598 21609 38827 38827 0.10392288636899139 QRKKQLLG 8 Unmodified _QRKKQLLG_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS UPN47_class_I_Rep_3 4 485.81170654296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 58.384 1 61.549 61.049 62.049 3.1658 0 0 0 0.40746 1 13562 13562 0.69038 0 1 33855 4345 21599 21610 38828 38828 0.12232861671009232 QRKLKKGKK 9 Unmodified _QRKLKKGKK_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 557.3009643554688 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 41.01 1 41.01 40.51 41.51 0 0 0 0 0.4007 1 8003 8003 0.52476 0 1 + 33856 23466 21600 21611 38829 38829 0.19873074413158065 QRKLKKGKK 9 Unmodified _QRKLKKGKK_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense MSMS UPN47_class_I_Rep_2 3 557.3812866210938 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 39.052 1 42.431 41.931 42.931 3.3785 0 0 0 0.4007 1 7628 7628 0.52476 0 1 + 33857 23466 21600 21611 38830 38830 0.19873074413158065 QRKLKKGKK 9 Unmodified _QRKLKKGKK_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense MSMS UPN47_class_I_Rep_3 4 557.76171875 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 38.005 1 41.247 40.747 41.747 3.2414 0 0 0 0.4007 1 7350 7350 0.52476 0 1 + 33858 23466 21600 21611 38831 38831 0.19873074413158065 QRKLKKGKK 9 Unmodified _QRKLKKGKK_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense MSMS UPN48_class_I_Rep_1 5 557.3811645507812 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 38.071 1 41.576 41.076 42.076 3.5052 0 0 0 0.4007 1 6549 6549 0.52476 0 1 + 33859 23466 21600 21611 38832 38832 0.19873074413158065 QRKLKKGKK 9 Unmodified _QRKLKKGKK_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense MSMS UPN48_class_I_Rep_1 5 557.3805541992188 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 38.213 1 41.718 41.218 42.218 3.5052 0 0 0 0.4007 1 6591 6591 0.52476 0 1 + 33860 23466 21600 21611 38833 38833 0.19873074413158065 QRKLKKGKK 9 Unmodified _QRKLKKGKK_ 0 0 0 REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense REV__HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|46|2|sense MSMS UPN48_class_I_Rep_2 6 557.3812255859375 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 37.794 1 41.51 41.01 42.01 3.7164 0 0 0 0.4007 1 6509 6509 0.52476 0 1 + 33861 23466 21600 21611 38834 38834 0.19873074413158065 QRKNVPLS 8 Unmodified _QRKNVPLS_ 0 0 0 MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|62|2|anti-sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|62|2|anti-sense MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|62|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.27996826171875 2 471.279983 940.545414 0.20692 9.7518E-05 -0.098497 -4.6419E-05 0.10842 5.1098E-05 471.2798424119405 83.408 0.82825 87.089 86.718 87.546 3.6814 127 94 2 0 0 0 0.82752 1 19805 19805 5.2307 0 1 219320 33862 16065 21601 21612 38835 38835 0.0727629588294576 QRKPKISS 8 Unmodified _QRKPKISS_ 0 0 0 REV__L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|44|3|sense REV__L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.287841796875 2 472.287808 942.561064 0.18122 8.5587E-05 -0.05347 -2.5253E-05 0.12775 6.0333E-05 472.28771761839243 86.289 1.5919 89.905 89.439 91.031 3.6153 534 196 4 0 0 0 0.82752 1 21477 21477 5.2307 5.2307 1 5200400 + 33863 25226 21602 21613 38836 38836 0.08748582400005489 QRKPRGRK 8 Unmodified _QRKPRGRK_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS UPN47_class_I_Rep_3 4 513.240478515625 2 513.325591 1024.63663 NaN NaN NaN NaN NaN NaN NaN 94.577 1 97.983 97.483 98.483 3.4068 0 0 0 0.40746 1 23534 23534 0.69038 0 1 + 33864 18606 21603 21614 38837 38837 0.12529604370934067 QRKRHTFF 8 Unmodified _QRKRHTFF_ 0 0 0 L1MC4_dup23091|chr19:34199750-34200681:+|3.9921604424568446|0.1754261498030943|4.51|151.0|1|1|sense L1MC4_dup23091|chr19:34199750-34200681:+|3.9921604424568446|0.1754261498030943|4.51|151.0|1|1|sense L1MC4_dup23091|chr19:34199750-34200681:+|3.9921604424568446|0.1754261498030943|4.51|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 560.3129272460938 2 560.312149 1118.60975 NaN NaN NaN NaN NaN NaN NaN 34.48 1 37.744 37.244 38.244 3.2639 0 0 0 0.40746 1 6274 6274 0.69038 0 1 33865 11467 21604 21615 38838 38838 0.05518495759747566 QRKTFVGRK 9 Unmodified _QRKTFVGRK_ 0 0 0 REV__ENSG00000121053|ENST00000225371|EPX REV__ENSG00000121053|ENST00000225371|EPX MSMS UPN48_class_I_Rep_1 5 560.3411865234375 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 78.866 1 82.401 81.901 82.901 3.5352 0 0 0 0.38916 1 18808 18808 3.2813 1.4371 1 + 33866 18721 21605 21616 38839 38839 0.11267337965318802 QRKTILQG 8 Unmodified _QRKTILQG_ 0 0 0 REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 472.28790283203125 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 93.971 1 93.971 93.471 94.471 0 0 0 0 0.40746 1 22788 22788 0.69038 0 1 + 33867 28654 21606 21617 38840 38840 0.08748582400016858 QRKTILQG 8 Unmodified _QRKTILQG_ 0 0 0 REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.2874755859375 2 472.287808 942.561064 0.21236 0.00010029 0.040106 1.8941E-05 0.25246 0.00011923 472.28767700267895 87.282 0.20766 90.722 90.676 90.884 3.4407 34 24 2 0 0 0 0.82752 1 21737 21737 0.69038 0 1 112740 + 33868 28654 21606 21617 38841 38841 0.08748582400016858 QRKTILQG 8 Unmodified _QRKTILQG_ 0 0 0 REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.2873840332031 2 472.287808 942.561064 0.043297 2.0449E-05 0.021746 1.027E-05 0.065044 3.0719E-05 472.2877108955382 87.279 0.14705 90.659 90.611 90.758 3.3801 30 18 2 0 0 0 0.82752 1 21864 21864 0.69038 0 1 141770 + 33869 28654 21606 21617 38842 38842 0.08748582400016858 QRKTILQG 8 Unmodified _QRKTILQG_ 0 0 0 REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.287353515625 2 472.287808 942.561064 0.21166 9.9966E-05 0.053907 2.546E-05 0.26557 0.00012543 472.28780679743863 87.875 0.54901 91.603 91.42 91.969 3.7279 79 66 2 0 0 0 0.82752 1 20917 20917 0.69038 0 1 155420 + 33870 28654 21606 21617 38843 38843 0.08748582400016858 QRKTILQG 8 Unmodified _QRKTILQG_ 0 0 0 REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense REV__L1MEf_dup5|chr1:1801824-1802486:+|2.768559035494437|0.13081928137314|4.4|151.0|12|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 472.287808 942.561064 0.21236 0.00010029 0.040106 1.8941E-05 0.25246 0.00011923 472.28767700267895 87.282 0.20766 90.722 90.676 90.884 3.4407 -0.082674 0.00038857 NaN 0.69038 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 112740 + 33871 28654 21606 21617 0.08748582400016858 QRKTPPVN 8 Unmodified _QRKTPPVN_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MULTI-MSMS UPN47_class_I_Rep_3 4 470.2721252441406 2 470.272158 938.529764 0.012672 5.9591E-06 -0.070731 -3.3263E-05 -0.058059 -2.7304E-05 470.2719988138006 83.281 0.63078 86.631 86.38 87.011 3.35 153 71 3 0 0 0 0.82752 1 20954 20954 4.756 2.4533 1 241770 33872 1893 21607 21618 38844 38844 0.05804009365908769 QRKTVPKS 8 Unmodified _QRKTVPKS_ 0 0 0 REV__L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|70|3|sense REV__L1MB3_dup3194|chr3:57811066-57813095:-|1.2333957345020905|0.0095984660079005|7.01|151.0|70|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.287841796875 2 472.287808 942.561064 0.18851 8.903E-05 0.031271 1.4769E-05 0.21978 0.0001038 472.2877752851132 87.542 0.23984 91.179 91.053 91.293 3.6371 42 28 2 0 0 0 0.82752 1 21882 21882 2.0598 0 1 71316 + 33873 25878 21608 21619 38845 38845 0.08748582400005489 QRKVKYRITII 11 Unmodified _QRKVKYRITII_ 0 0 0 REV__L1MEd_dup8847|chr6:149358674-149359891:-|1.2119058486029708|0.0367737180583201|5.04|151.0|13|1|sense REV__L1MEd_dup8847|chr6:149358674-149359891:-|1.2119058486029708|0.0367737180583201|5.04|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 473.3057861328125 3 473.304911 1416.8929 NaN NaN NaN NaN NaN NaN NaN 54.625 1 58.207 57.707 58.707 3.5817 0 0 0 0.38417 1 11564 11564 1.4551 0.94916 1 + 33874 28589 21609 21620 38846 38846 0.20113242364686812 QRLAAILRRRR 11 Unmodified _QRLAAILRRRR_ 0 0 0 ENSG00000197980|ENST00000356539|LEKR1 ENSG00000197980|ENST00000356539|LEKR1 ENSG00000197980|ENST00000356539|LEKR1 MSMS UPN48_class_I_Rep_1 5 470.30841064453125 3 470.307649 1407.90112 NaN NaN NaN NaN NaN NaN NaN 88.599 1 92.222 91.722 92.722 3.6229 0 0 0 0.38417 1 21257 21257 0.094841 0 1 33875 5400 21610 21621 38847 38847 0.21348234124684495 QRLHLKKF 8 Unmodified _QRLHLKKF_ 0 0 0 ENSG00000164645|ENST00000297203|TEX47 ENSG00000164645|ENST00000297203|TEX47 ENSG00000164645|ENST00000297203|TEX47 MULTI-MSMS UPN48_class_I_Rep_3 7 535.3352661132812 2 535.335093 1068.65563 0.54737 0.00029303 0.46236 0.00024752 1.0097 0.00054054 535.3352283246669 109.24 0.43897 112.91 112.8 113.24 3.6751 125 59 3 0 0 0 0.82752 1 25910 25910 0.69038 0 1 4505300 33876 4122 21611 21622 38848 38848 0.12405140941996251 QRLLGEPLP 9 Unmodified _QRLLGEPLP_ 0 0 0 REV__ENSG00000268350|ENST00000622447|FAM156A REV__ENSG00000268350|ENST00000622447|FAM156A MSMS UPN47_class_I_Rep_3 4 511.80133056640625 2 511.803291 1021.59203 NaN NaN NaN NaN NaN NaN NaN 31.387 1 34.686 34.186 35.186 3.2991 0 0 0 0.39518 1 5341 5341 1.8442 0.36234 1 + 33877 20676 21612 21623 38849 38849 0.08209735714228827 QRLLSRTF 8 Unmodified _QRLLSRTF_ 0 0 0 REV__L1PBa_dup1536|chr10:5783254-5784958:-|4.94935974438252|0.3381963195356199|3.87|151.0|51|3|sense REV__L1PBa_dup1536|chr10:5783254-5784958:-|4.94935974438252|0.3381963195356199|3.87|151.0|51|3|sense MSMS UPN48_class_I_Rep_3 7 510.7994079589844 2 510.801083 1019.58761 NaN NaN NaN NaN NaN NaN NaN 67.948 1 71.456 70.956 71.956 3.5077 0 0 0 0.40472 1 15550 15550 4.3292 1.7518 1 + 33878 30634 21613 21624 38850 38850 0.07860271291326626 QRLNPSVP 8 Unmodified _QRLNPSVP_ 0 0 0 REV__nc|ENSG00000074266|O75530-2|EED REV__nc|ENSG00000074266|O75530-2|EED MULTI-MSMS UPN47_class_I_Rep_3 4 455.7587890625 2 455.758884 909.503215 -0.84738 -0.0003862 0.3904 0.00017793 -0.45698 -0.00020827 455.758880614132 27.535 0.77388 30.878 30.398 31.172 3.3422 113 66 2 0 0 0 0.82752 1 4118 4118 5.2307 0 1 102260 + 33879 31941 21614 21625 38851 38851 0.044843204745689036 QRLPLHVQ 8 Unmodified _QRLPLHVQ_ 0 0 0 REV__nc|ENSG00000156026|Q8NE86-3|MCU REV__nc|ENSG00000156026|Q8NE86-3|MCU MSMS UPN47_class_I_Rep_2 3 495.79638671875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 87.918 1 91.365 90.865 91.865 3.4471 0 0 0 0.40604 1 21858 21858 2.5775 0 1 + 33880 19782 21615 21626 38852 38852 0.08184288636903148 QRLQEPLVPVA 11 Unmodified _QRLQEPLVPVA_ 0 0 0 nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426-4|SYNJ1 nc|ENSG00000159082|O43426-4|SYNJ1 MSMS UPN47_class_I_Rep_1 2 625.3681030273438 2 625.366787 1248.71902 NaN NaN NaN NaN NaN NaN NaN 98.861 1 102.65 102.15 103.15 3.7926 0 0 0 0.38417 1 24465 24465 2.9952 0 1 33881 3822 21616 21627 38853 38853 0.10461036868582596 QRLQRRQLWW 10 Unmodified _QRLQRRQLWW_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MSMS UPN48_class_I_Rep_2 6 490.61383056640625 3 490.612738 1468.81638 NaN NaN NaN NaN NaN NaN NaN 34.11 1 37.77 37.27 38.27 3.6607 0 0 0 0.53105 1 5462 5462 0.15932 0.036457 1 + 33882 21573 21617 21628 38854 38854 0.10072863588061409 QRLRDPDIN 9 Unmodified _QRLRDPDIN_ 0 0 0 nc|ENSG00000170791|Q9BUK0-5|CHCHD7;nc|ENSG00000170791|Q9BUK0-3|CHCHD7;ENSG00000170791|ENST00000355315|CHCHD7;nc|ENSG00000170791|Q9BUK0-2|CHCHD7;nc|ENSG00000170791|Q9BUK0-4|CHCHD7 nc|ENSG00000170791|Q9BUK0-5|CHCHD7 nc|ENSG00000170791|Q9BUK0-5|CHCHD7 MSMS UPN48_class_I_Rep_2 6 563.7518920898438 2 563.801811 1125.58907 NaN NaN NaN NaN NaN NaN NaN 112.34 1 116.01 115.51 116.51 3.6648 0 0 0 0.39518 1 26761 26761 1.8442 0 1 33883 4488 21618 21629 38855 38855 0.031298605894335196 QRLRQELVHL 10 Unmodified _QRLRQELVHL_ 0 0 0 REV__ENST00000464858.5_1_1:228333604-228336395:+|nuORF REV__ENST00000464858.5_1_1:228333604-228336395:+|nuORF MSMS UPN48_class_I_Rep_1 5 646.381103515625 2 646.383303 1290.75205 NaN NaN NaN NaN NaN NaN NaN 87.084 1 90.703 90.203 91.203 3.6187 0 0 0 0.53105 1 20864 20864 1.6526 0.17072 1 + 33884 19463 21619 21630 38856 38856 0.11830663711248235 QRLRRHGH 8 Unmodified _QRLRRHGH_ 0 0 0 ENST00000519067.5_1_8:142225870-142228200:-|nuORF ENST00000519067.5_1_8:142225870-142228200:-|nuORF ENST00000519067.5_1_8:142225870-142228200:-|nuORF MSMS UPN48_class_I_Rep_1 5 529.9778442382812 2 530.30519 1058.59583 NaN NaN NaN NaN NaN NaN NaN 29.483 1 33.033 32.533 33.533 3.5499 0 0 0 0.40738 1 4104 4104 0.79363 0 1 33885 7218 21620 21631 38857 38857 0.0688726305131695 QRLSILGLREQ 11 Unmodified _QRLSILGLREQ_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.26171875 3 438.261371 1311.76228 -0.028986 -1.2703E-05 1.5737 0.00068971 1.5448 0.00067701 438.26202542177367 42.963 0.23405 46.474 46.375 46.609 3.5103 26 18 2 0 0 0 0.66092 1 8004 8004 2.2527 0.66045 1 172650 33886 12200 21621 21632 38858 38858 0.11887226645808369 QRLSILGLREQ 11 Unmodified _QRLSILGLREQ_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 438.261371 1311.76228 0.11685 5.1212E-05 -0.67521 -0.00029592 -0.55836 -0.00024471 438.26110618792063 46.823 0.05518 46.823 46.792 46.847 0 0.17469 -0.0029066 NaN 2.2527 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 29510 33887 12200 21621 21632 0.11887226645808369 QRLSILGLREQ 11 Unmodified _QRLSILGLREQ_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|125|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 438.261371 1311.76228 -0.028986 -1.2703E-05 1.5737 0.00068971 1.5448 0.00067701 438.26202542177367 42.963 0.23405 46.474 46.375 46.609 3.5103 -0.17469 5.0261E-05 NaN 2.2527 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 172650 33888 12200 21621 21632 0.11887226645808369 QRLSVQELY 9 Unmodified _QRLSVQELY_ 0 0 0 REV__ENSG00000174007|ENST00000409690|CEP19 REV__ENSG00000174007|ENST00000409690|CEP19 MULTI-MSMS UPN48_class_I_Rep_3 7 568.308837890625 2 568.308938 1134.60332 0.34179 0.00019424 -0.0086953 -4.9416E-06 0.3331 0.0001893 568.3088933778804 50.536 0.6533 54.157 53.784 54.438 3.621 68 40 2 0 0 0 0.43153 1 10196 10196 6.2058 0.47393 1 168980 + 33889 20505 21622 21633 38859 38859 0.04140513017705416 QRLTEEQPV 9 Unmodified _QRLTEEQPV_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MSMS UPN47_class_I_Rep_3 4 550.2929077148438 2 550.290745 1098.56694 NaN NaN NaN NaN NaN NaN NaN 63.349 1 66.518 66.018 67.018 3.1698 0 0 0 0.39036 1 15080 15080 2.9952 0 1 + 33890 21042 21623 21634 38860 38860 0.02159636120995856 QRLVFRVYK 9 Unmodified _QRLVFRVYK_ 0 0 0 L1ME1_dup16755|chr9:96904412-96904991:-|1.382227064463914|0.0948430372945796|3.87|151.0|7|1|sense L1ME1_dup16755|chr9:96904412-96904991:-|1.382227064463914|0.0948430372945796|3.87|151.0|7|1|sense L1ME1_dup16755|chr9:96904412-96904991:-|1.382227064463914|0.0948430372945796|3.87|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 604.8704833984375 2 604.866757 1207.71896 NaN NaN NaN NaN NaN NaN NaN 97.612 1 101.03 100.53 101.53 3.4216 0 0 0 0.39518 1 24192 24192 1.8442 0.36234 1 33891 12250 21624 21635 38861 38861 0.12341081659201336 QRMIVLYHLPK 11 Unmodified _QRMIVLYHLPK_ 0 0 0 REV__nc|ENSG00000254769|Q8NGN8|OR4A4P REV__nc|ENSG00000254769|Q8NGN8|OR4A4P MULTI-MSMS UPN46_class_I_Rep_3 1 466.6084289550781 3 466.607713 1396.80131 0.23018 0.0001074 0.65986 0.0003079 0.89004 0.0004153 466.60819126519357 94.91 0.10439 94.91 94.822 94.927 0 13 9 3 0 0 0 0.68024 1 23034 23034 0.50596 0.34663 1 165450 + 33892 21316 21625 21636 38862 38862 0.11878235675862925 QRMIVLYHLPK 11 Unmodified _QRMIVLYHLPK_ 0 0 0 REV__nc|ENSG00000254769|Q8NGN8|OR4A4P REV__nc|ENSG00000254769|Q8NGN8|OR4A4P MULTI-SECPEP UPN48_class_I_Rep_1 5 467.1022644042969 3 466.607713 1396.80131 0.069348 3.2358E-05 0.27346 0.0001276 0.34281 0.00015996 466.60791229855204 90.958 0.20171 94.584 94.429 94.631 3.626 51 26 3 0 0 0 22.551 1 21847 21847 0.094841 0 1 126180 + 33893 21316 21625 21636 38863 38863 0.11878235675862925 QRMIVLYHLPK 11 Unmodified _QRMIVLYHLPK_ 0 0 0 REV__nc|ENSG00000254769|Q8NGN8|OR4A4P REV__nc|ENSG00000254769|Q8NGN8|OR4A4P MULTI-SECPEP UPN48_class_I_Rep_2 6 467.1016540527344 3 466.607713 1396.80131 0.19696 9.1904E-05 0.1104 5.1512E-05 0.30736 0.00014342 466.60791349323483 90.52 0.26966 94.267 94.182 94.452 3.7471 50 39 3 0 0 0 22.551 1 21562 21562 0.094841 0 1 96757 + 33894 21316 21625 21636 38864 38864 0.11878235675862925 QRMIVLYHLPK 11 Unmodified _QRMIVLYHLPK_ 0 0 0 REV__nc|ENSG00000254769|Q8NGN8|OR4A4P REV__nc|ENSG00000254769|Q8NGN8|OR4A4P MULTI-MATCH UPN46_class_I_Rep_3 1 3 466.607713 1396.80131 0.22998 0.00010731 0.6145 0.00028673 0.84448 0.00039404 466.60803477799004 94.16 0.10238 94.16 94.107 94.209 0 -0.053534 0.00058677 NaN 0.094841 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 66104 + 33895 21316 21625 21636 0.11878235675862925 QRMRLPALRA 10 Unmodified _QRMRLPALRA_ 0 0 0 ENST00000597582.1_1_19:58881256-58892418:-|nuORF ENST00000597582.1_1_19:58881256-58892418:-|nuORF ENST00000597582.1_1_19:58881256-58892418:-|nuORF MSMS UPN47_class_I_Rep_3 4 606.3607177734375 2 606.361316 1210.70808 NaN NaN NaN NaN NaN NaN NaN 114.05 1 117.54 117.04 118.04 3.4963 0 0 0 0.53105 1 27993 27993 0.40072 0 1 33896 7652 21626 21637 38865 38865 0.11115356013283417 QRNKRREK 8 Unmodified _QRNKRREK_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MSMS UPN48_class_I_Rep_2 6 557.8312377929688 2 557.831237 1113.64792 NaN NaN NaN NaN NaN NaN NaN 91.715 1 95.478 94.978 95.978 3.7629 0 0 0 0.40643 1 21837 21837 2.0598 0 1 33897 1681 21627 21638 38866 38866 0.09564381674408651 QRNPTSLAPE 10 Unmodified _QRNPTSLAPE_ 0 0 0 L1MA4A_dup4075|chr10:21704359-21706198:-|4.05211430252408|0.0886416015922798|5.51|151.0|9|1|sense L1MA4A_dup4075|chr10:21704359-21706198:-|4.05211430252408|0.0886416015922798|5.51|151.0|9|1|sense L1MA4A_dup4075|chr10:21704359-21706198:-|4.05211430252408|0.0886416015922798|5.51|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 557.2356567382812 2 556.78837 1111.56219 NaN NaN NaN NaN NaN NaN NaN 31.704 1 35.003 34.503 35.503 3.2991 0 0 0 0.53105 1 5437 5437 1.3295 0.13619 1 33898 9806 21628 21639 38867 38867 0.010867519782550517 QRPCLAMGL 9 Unmodified _QRPCLAMGL_ 0 0 0 REV__ENSG00000171989|ENST00000307144|LDHAL6B REV__ENSG00000171989|ENST00000307144|LDHAL6B MULTI-MSMS UPN47_class_I_Rep_3 4 494.75616455078125 2 494.756972 987.499392 -0.46581 -0.00023046 -0.52698 -0.00026073 -0.99279 -0.00049119 494.7566091493521 26.569 0.40719 29.917 29.718 30.125 3.3478 45 33 2 0 0 0 0.45688 1 3924 3924 4.756 0.42677 1 39032 + 33899 20431 21629 21640 38868 38868 0.005141913848319746 QRPHNCTPVWA 11 Unmodified _QRPHNCTPVWA_ 0 0 0 AluSx3_dup27136|chr17:29791909-29792202:-|1.9358579286771864|0.0184555902028424|6.71|151.0|13|3|sense AluSx3_dup27136|chr17:29791909-29792202:-|1.9358579286771864|0.0184555902028424|6.71|151.0|13|3|sense AluSx3_dup27136|chr17:29791909-29792202:-|1.9358579286771864|0.0184555902028424|6.71|151.0|13|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 437.25726318359375 3 436.880384 1307.61932 0.15131 6.6104E-05 -1.5106 -0.00065997 -1.3593 -0.00059387 436.87921173123635 94.073 0.29765 94.073 93.875 94.173 0 43 31 2 0 0 0 22.551 1 22800 22800 0.08335 0 1 52591 33900 330 21630 21641 38869 38869 -0.022181040170607957 QRPLLSLLG 9 Unmodified _QRPLLSLLG_ 0 0 0 HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|212|3|sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|212|3|sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|212|3|sense MSMS UPN47_class_I_Rep_2 3 499.2777099609375 2 498.813659 995.612765 NaN NaN NaN NaN NaN NaN NaN 37.643 1 41.03 40.53 41.53 3.3879 0 0 0 0.4029 1 7201 7201 0 0 1 33901 8028 21631 21642 38870 38870 0.11478326093924807 QRPMEVRHS 9 Unmodified _QRPMEVRHS_ 0 0 0 REV__nc|ENSG00000154310|Q9UKE5-8|TNIK REV__nc|ENSG00000154310|Q9UKE5-8|TNIK MSMS UPN47_class_I_Rep_1 2 570.288330078125 2 570.290556 1138.56656 NaN NaN NaN NaN NaN NaN NaN 22.727 1 26.431 25.931 26.931 3.7042 0 0 0 0.39598 1 2690 2690 1.6526 0.17072 1 + 33902 19735 21632 21643 38871 38871 0.0028193792015827057 QRPRPPPLA 9 Unmodified _QRPRPPPLA_ 0 0 0 ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 516.31005859375 2 516.309075 1030.6036 0.32371 0.00016713 2.8323 0.0014623 3.156 0.0016295 516.3100515216867 100.76 0.031113 100.76 100.74 100.78 0 5 3 2 0 0 0 0.48643 1 24573 24573 2.0598 0.40713 1 77715 33903 5849 21633 21644 38872 38872 0.08951977528226962 QRPRPPPLA 9 Unmodified _QRPRPPPLA_ 0 0 0 ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF MSMS UPN48_class_I_Rep_1 5 516.3107299804688 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 96.914 1 100.52 100.02 101.02 3.6088 0 0 0 0.39428 1 23371 23371 2.0598 0.40713 1 33904 5849 21633 21644 38873 38873 0.08951977528226962 QRPRPPPLA 9 Unmodified _QRPRPPPLA_ 0 0 0 ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF MSMS UPN48_class_I_Rep_2 6 516.3093872070312 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 96.828 1 100.61 100.11 101.11 3.7804 0 0 0 0.39428 1 23009 23009 2.0598 0.40713 1 33905 5849 21633 21644 38874 38874 0.08951977528226962 QRPRPPPLA 9 Unmodified _QRPRPPPLA_ 0 0 0 ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF MSMS UPN48_class_I_Rep_3 7 516.3121337890625 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 95.654 1 99.562 99.062 100.06 3.9084 0 0 0 0.39428 1 22674 22674 2.0598 0.40713 1 33906 5849 21633 21644 38875 38875 0.08951977528226962 QRPRPPPLA 9 Unmodified _QRPRPPPLA_ 0 0 0 ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF MSMS UPN48_class_I_Rep_3 7 516.30908203125 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 107.22 1 110.91 110.41 111.41 3.6899 0 0 0 0.38299 1 25271 25271 2.3027 0 1 33907 5849 21633 21644 38876 38876 0.08951977528226962 QRPRPPPLA 9 Unmodified _QRPRPPPLA_ 0 0 0 ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF ENST00000008527.9_1_12:107486977-107487346:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 516.309075 1030.6036 0.34622 0.00017876 -2.9939 -0.0015458 -2.6477 -0.001367 516.3092725794644 97.659 0.098473 101.08 101.01 101.11 3.4216 0.15819 -0.0019743 NaN 2.0598 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 94963 33908 5849 21633 21644 0.08951977528226962 QRPWAWRQ 8 Unmodified _QRPWAWRQ_ 0 0 0 L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|6|1|sense L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|6|1|sense L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 564.2947387695312 2 564.296499 1126.57845 NaN NaN NaN NaN NaN NaN NaN 26.841 1 30.601 30.101 31.101 3.7596 0 0 0 0.40746 1 3450 3450 0.69038 0 1 33909 9299 21634 21645 38877 38877 0.020219227256575323 QRPWKRMG 8 Unmodified _QRPWKRMG_ 0 0 0 REV__ENSG00000175874|ENST00000324768|CREG2 REV__ENSG00000175874|ENST00000324768|CREG2 MSMS UPN48_class_I_Rep_1 5 530.2238159179688 2 529.787453 1057.56035 NaN NaN NaN NaN NaN NaN NaN 26.222 1 29.788 29.288 30.288 3.5667 0 0 0 0.40746 1 3184 3184 0.69038 0.088878 1 + 33910 20569 21635 21646 38878 38878 0.033874644793058906 QRQHMLWT 8 Unmodified _QRQHMLWT_ 0 0 0 ENST00000569787.1_1_16:22328322-22336592:+|nuORF;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E ENST00000569787.1_1_16:22328322-22336592:+|nuORF ENST00000569787.1_1_16:22328322-22336592:+|nuORF MSMS UPN47_class_I_Rep_3 4 550.2772827148438 2 550.276918 1098.53928 NaN NaN NaN NaN NaN NaN NaN 97.261 1 100.68 100.18 101.18 3.4216 0 0 0 0.40604 1 24113 24113 2.5775 0 1 33911 958 21636 21647 38879 38879 -0.006045456202400601 QRQHWLSF 8 Unmodified _QRQHWLSF_ 0 0 0 REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 551.2821044921875 2 551.283057 1100.55156 0.3086 0.00017013 -0.53593 -0.00029545 -0.22733 -0.00012532 551.2823731944009 56.684 0.92833 60.226 59.814 60.743 3.5427 300 88 5 0 0 0 0.82752 3 12046 12046;12082;12214 36.044 28.487 1 1767000 + 33912 20746 21637 21648 38880;38881;38882 38880 0.005308141144723777 QRQIGKLK 8 Unmodified _QRQIGKLK_ 0 0 0 REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|83|3|sense REV__L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|83|3|sense MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 88.871 1 92.323 91.823 92.823 3.4525 0 0 0 0.40746 1 22089 22089 0.69038 0 1 + 33913 29256 21638 21649 38883 38883 0.12232861671009232 QRQLHWAL 8 Unmodified _QRQLHWAL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MSMS UPN48_class_I_Rep_1 5 526.2920532226562 2 526.293425 1050.5723 NaN NaN NaN NaN NaN NaN NaN 31.937 1 35.471 34.971 35.971 3.5342 0 0 0 0.40738 1 4790 4790 0.79363 0 1 33914 1792 21639 21650 38884 38884 0.049034044941208776 QRQLHWAL 8 Unmodified _QRQLHWAL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MSMS UPN48_class_I_Rep_1 5 526.2935180664062 2 526.293425 1050.5723 NaN NaN NaN NaN NaN NaN NaN 36.024 1 39.534 39.034 40.034 3.5101 0 0 0 0.40738 1 5967 5967 0.79363 0 1 33915 1792 21639 21650 38885 38885 0.049034044941208776 QRQLHWAL 8 Unmodified _QRQLHWAL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-SECPEP UPN48_class_I_Rep_2 6 525.7899780273438 2 526.293425 1050.5723 0.38465 0.00020244 -0.84128 -0.00044276 -0.45663 -0.00024032 526.2918810420668 34.308 0.047844 37.972 37.95 37.997 3.6646 5 3 2 0 0 0 0.72333 1 5520 5520 0.79363 0 1 32531 33916 1792 21639 21650 38886 38886 0.049034044941208776 QRQLLPSE 8 Unmodified _QRQLLPSE_ 0 0 0 ENST00000202917.9_1_12:113344722-113344845:+|nuORF ENST00000202917.9_1_12:113344722-113344845:+|nuORF ENST00000202917.9_1_12:113344722-113344845:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 485.2210693359375 2 485.769448 969.524344 0.17318 8.4124E-05 2.1168 0.0010283 2.29 0.0011124 485.77153409727686 36.859 0.02853 36.859 36.841 36.87 0 4 2 2 0 0 0 0.72333 1 6881 6881 2.3027 0 1 18014 33917 5856 21640 21651 38887 38887 0.03836285783438598 QRQLQRRL 8 Unmodified _QRQLQRRL_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-SECPEP UPN46_class_I_Rep_3 1 548.8351440429688 2 549.336156 1096.65776 0.25238 0.00013864 1.0993 0.0006039 1.3517 0.00074254 549.336702637154 35.287 0.053802 35.287 35.252 35.306 0 5 3 2 0 0 0 0.72333 1 6411 6411 0.69038 0 1 91715 + 33918 17766 21641 21652 38888 38888 0.11329569679810447 QRQNRKYT 8 Unmodified _QRQNRKYT_ 0 0 0 REV__L1PA4_dup4557|chr6:57451782-57457923:-|1.5968329131001384|0.0363941645007639|5.46|149.0|144|3|sense REV__L1PA4_dup4557|chr6:57451782-57457923:-|1.5968329131001384|0.0363941645007639|5.46|149.0|144|3|sense MSMS UPN47_class_I_Rep_1 2 547.2977294921875 2 547.296696 1092.57884 NaN NaN NaN NaN NaN NaN NaN 43.09 1 46.777 46.277 47.277 3.6875 0 0 0 0.40746 1 8826 8826 0.69038 0 1 + 33919 29640 21642 21653 38889 38889 0.03625297654843962 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MULTI-MSMS UPN46_class_I_Rep_3 1 495.958984375 3 495.958908 1484.85489 0.30656 0.00015204 0.046317 2.2971E-05 0.35287 0.00017501 495.95889966254697 100.58 0.24697 100.58 100.36 100.61 0 39 29 2 0 0 0 0.68478 1 24512 24512 0.094841 0 1 441060 + 33920 20284 21643 21654 38890 38890 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MULTI-MSMS UPN47_class_I_Rep_1 2 495.958740234375 3 495.958908 1484.85489 0.27902 0.00013838 -0.34903 -0.00017311 -0.07001 -3.4722E-05 496.2929973037034 95.902 0.50209 99.667 99.277 99.779 3.7648 99 68 2 0 0 0 0.68024 1 23786 23786 0.50596 0.051438 1 209900 + 33921 20284 21643 21654 38891 38891 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MULTI-MSMS UPN48_class_I_Rep_1 5 495.95892333984375 3 495.958908 1484.85489 0.17401 8.6302E-05 0.46684 0.00023154 0.64085 0.00031784 495.9588768561042 95.982 1.034 99.594 99.146 100.18 3.6124 298 136 4 0 0 0 0.68081 3 23120 23120;23172;23251 0.45452 0.45452 1 756540 + 33922 20284 21643 21654 38892;38893;38894 38892 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MSMS UPN48_class_I_Rep_1 5 495.9588623046875 3 495.958908 1484.85489 NaN NaN NaN NaN NaN NaN NaN 95.423 1 99.04 98.54 99.54 3.6167 0 0 0 0.38417 1 22980 22980 0.50596 0.09769 1 + 33923 20284 21643 21654 38895 38895 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MSMS UPN48_class_I_Rep_1 5 495.9591369628906 3 495.958908 1484.85489 NaN NaN NaN NaN NaN NaN NaN 96.779 1 100.39 99.888 100.89 3.6088 0 0 0 0.38417 1 23332 23332 0.50596 0.051438 1 + 33924 20284 21643 21654 38896 38896 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MULTI-MSMS UPN48_class_I_Rep_3 7 495.9590759277344 3 495.958908 1484.85489 0.25143 0.0001247 0.041089 2.0378E-05 0.29252 0.00014508 495.9588629956492 95.665 1.3251 99.574 98.86 100.19 3.9084 275 182 2 0 0 0 0.67113 1 22811 22811 1.3296 1.3296 1 477490 + 33925 20284 21643 21654 38897 38897 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958908 1484.85489 0.4462 0.0002213 -0.10004 -4.9618E-05 0.34616 0.00017168 495.95880361463657 96.263 0.30687 99.742 99.633 99.94 3.4791 0.062283 -0.00014743 NaN 1.3296 70 44 3 NaN NaN NaN NaN 0 NaN NaN 0 156240 + 33926 20284 21643 21654 0.13186169222581157 QRQRHVRLHQK 11 Unmodified _QRQRHVRLHQK_ 0 0 0 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507 MULTI-MATCH UPN47_class_I_Rep_3 4 3 495.958908 1484.85489 0.28008 0.00013891 -0.015834 -7.8528E-06 0.26425 0.00013106 495.9588647092521 96.249 0.59666 99.663 99.446 100.04 3.414 -0.016786 -2.213E-05 NaN 1.3296 136 88 2 NaN NaN NaN NaN 0 NaN NaN 0 203460 + 33927 20284 21643 21654 0.13186169222581157 QRQRKGTV 8 Unmodified _QRQRKGTV_ 0 0 0 ENST00000498057.1_1_3:48678700-48679554:-|nuORF ENST00000498057.1_1_3:48678700-48679554:-|nuORF ENST00000498057.1_1_3:48678700-48679554:-|nuORF MSMS UPN47_class_I_Rep_3 4 486.77734375 2 486.788507 971.562461 NaN NaN NaN NaN NaN NaN NaN 36.283 1 39.538 39.038 40.038 3.2547 0 0 0 0.40643 1 6823 6823 2.0598 0 1 33928 7114 21644 21655 38898 38898 0.07554216488767906 QRQYKKRY 8 Unmodified _QRQYKKRY_ 0 0 0 L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|58|3|sense L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|58|3|sense L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|58|3|sense MSMS UPN47_class_I_Rep_1 2 585.3297119140625 2 585.330539 1168.64652 NaN NaN NaN NaN NaN NaN NaN 71.72 1 75.095 74.595 75.595 3.3751 0 0 0 0.40746 1 17504 17504 0.69038 0 1 33929 12393 21645 21656 38899 38899 0.06894747585670302 QRRALRFAAA 10 Unmodified _QRRALRFAAA_ 0 0 0 REV__ENSG00000262814|ENST00000333676|MRPL12 REV__ENSG00000262814|ENST00000333676|MRPL12 MSMS UPN48_class_I_Rep_1 5 580.2952880859375 2 580.343981 1158.67341 NaN NaN NaN NaN NaN NaN NaN 93.723 1 97.344 96.844 97.844 3.6208 0 0 0 0.53105 1 22533 22533 1.6526 0.17072 1 + 33930 21403 21646 21657 38900 38900 0.10041856196858134 QRRARFKKRRS 11 Unmodified _QRRARFKKRRS_ 0 0 0 REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|58|2|sense REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|58|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.9747619628906 3 496.97467 1487.90218 0.17795 8.8438E-05 0.054928 2.7298E-05 0.23288 0.00011574 496.97460811268064 105.95 0.99429 109.58 109.02 110.02 3.6277 481 133 5 0 0 0 0.57454 4 25513 25451;25482;25513;25546 5.8681 4.5385 1 6490700 + 33931 30491 21647 21658 38901;38902;38903;38904 38903 0.17774448493582895 QRRARFKKRRS 11 Unmodified _QRRARFKKRRS_ 0 0 0 REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|58|2|sense REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|58|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 496.97467 1487.90218 0.43746 0.00021741 -0.11453 -5.692E-05 0.32293 0.00016049 496.97444545349595 106.01 0.75862 109.54 109.3 110.06 3.5345 -0.049297 -0.00020581 NaN 5.8681 258 112 3 NaN NaN NaN NaN 0 NaN NaN 0 1316100 + 33932 30491 21647 21658 0.17774448493582895 QRRARFKKRRS 11 Unmodified _QRRARFKKRRS_ 0 0 0 REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|58|2|sense REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|58|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 496.97467 1487.90218 0.28351 0.0001409 0.048952 2.4328E-05 0.33246 0.00016523 496.97455691425756 106.06 0.74137 109.6 109.33 110.07 3.5367 0.0038667 3.7935E-05 NaN 5.8681 238 110 3 NaN NaN NaN NaN 0 NaN NaN 0 1402900 + 33933 30491 21647 21658 0.17774448493582895 QRRARHRVV 9 Unmodified _QRRARHRVV_ 0 0 0 MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|37|1|anti-sense MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|37|1|anti-sense MER52A_dup165|chr2:177465366-177467135:-|1.383127226769346|0.0984431971774425|3.81|151.0|37|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.8635864257812 2 589.360496 1176.70644 0.54401 0.00032062 1.1015 0.0006492 1.6455 0.00096982 589.3611031125465 106.64 0.060349 106.64 106.61 106.67 0 8 6 2 0 0 0 0.50088 1 26013 26013 0.52476 0 1 77114 33934 16091 21648 21659 38905 38905 0.12515483039533137 QRREEEEE 8 Unmodified _QRREEEEE_ 0 0 0 ENST00000249861.8_1_15:71184746-71185064:-|nuORF REV__ENSG00000181291|ENST00000631683|TMEM132E REV__ENSG00000181291|ENST00000631683|TMEM132E MSMS UPN48_class_I_Rep_1 5 552.7470703125 2 552.749441 1103.48433 NaN NaN NaN NaN NaN NaN NaN 113.18 1 116.81 116.31 117.31 3.6314 0 0 0 0.40625 1 27489 27489 2.3027 0 1 33935 20730 21649 21660 38906 38906 -0.06327305677791628 QRREGLRYR 9 Unmodified _QRREGLRYR_ 0 0 0 REV__HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|46|1|anti-sense REV__HERVL-int_dup2121|chr17:4118054-4119530:-|1.0281484051180505|0.0307871594681823|5.06|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_1 5 617.6813354492188 2 617.349794 1232.68504 NaN NaN NaN NaN NaN NaN NaN 45.481 1 48.997 48.497 49.497 3.5162 0 0 0 0.39518 1 8775 8775 1.8442 0 1 + 33936 23880 21650 21661 38907 38907 0.07800053220171321 QRRETNYINIL 11 Unmodified _QRRETNYINIL_ 0 0 0 REV__L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|7|1|sense REV__L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|7|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.2822570800781 3 473.92828 1418.76301 0.24996 0.00011846 -0.091713 -4.3466E-05 0.15824 7.4996E-05 473.9281981603719 110.42 0.25505 110.42 110.29 110.55 0 40 27 2 0 0 0 22.551 1 27167 27167 1.2148 0.51716 1 117430 + 33937 27164 21651 21662 38908 38908 0.07038021294920327 QRRGKVVALEI 11 Unmodified _QRRGKVVALEI_ 0 0 0 REV__nc|ENSG00000165802|Q6X4W1-5|NSMF REV__nc|ENSG00000165802|Q6X4W1-5|NSMF MULTI-MSMS UPN47_class_I_Rep_2 3 634.8927001953125 2 634.893503 1267.77245 0.63445 0.00040281 -0.88408 -0.0005613 -0.24963 -0.00015849 634.8926110111565 98.36 0.48264 101.85 101.48 101.96 3.4897 106 65 2 0 0 0 0.67398 1 24041 24041 1.0715 0.67075 1 296180 + 33938 20136 21652 21663 38909 38909 0.14927834371110293 QRRHRPQR 8 Unmodified _QRRHRPQR_ 0 0 0 MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.3284912109375 2 567.329196 1132.64384 0.46334 0.00026287 1.1865 0.00067316 1.6499 0.00093603 567.3295937653246 98.925 0.22803 98.925 98.741 98.969 0 53 25 3 0 0 0 0.82752 1 24057 24057 2.3027 0.4585 1 360680 33939 16107 21653 21664 38910 38910 0.08282336971365112 QRRKKRRNRWE 11 Unmodified _QRRKKRRNRWE_ 0 0 0 REV__nc|ENSG00000153253|Q9NY46-4|SCN3A REV__nc|ENSG00000153253|Q9NY46-4|SCN3A MULTI-SECPEP UPN48_class_I_Rep_1 5 538.16162109375 3 538.317095 1611.92946 0.38654 0.00020808 0.43779 0.00023567 0.82434 0.00044375 538.3173558032906 53.644 0.19146 57.158 57.051 57.242 3.5143 16 13 2 0 0 0 22.551 1 11300 11300 0.094841 0.094841 1 55721 + 33940 19708 21654 21665 38911 38911 0.1479693203395982 QRRKLIRHY 9 Unmodified _QRRKLIRHY_ 0 0 0 REV__nc|ENSG00000001167|P23511-2|NFYA REV__nc|ENSG00000001167|P23511-2|NFYA MSMS UPN48_class_I_Rep_1 5 635.3850708007812 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 69.32 1 72.775 72.275 73.275 3.4548 0 0 0 0.4007 1 16073 16073 0.52476 0 1 + 33941 17510 21655 21666 38912 38912 0.13417807013638594 QRRKRKRKRIK 11 Unmodified _QRRKRKRKRIK_ 0 0 0 L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|49|3|sense L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|49|3|sense L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|49|3|sense MSMS UPN46_class_I_Rep_3 1 518.3085327148438 3 518.353481 1552.03861 NaN NaN NaN NaN NaN NaN NaN 77.213 1 77.213 76.713 77.713 0 0 0 0 0.38417 1 18040 18040 0 0 1 33942 8712 21656 21667 38913 38913 0.2846756272408584 QRRKTVVI 8 Unmodified _QRRKTVVI_ 0 0 0 L1MD_dup7744|chr17:20115509-20116075:+|1.0980280721028215|0.006583358223345|7.38|151.0|3|1|sense L1MD_dup7744|chr17:20115509-20116075:+|1.0980280721028215|0.006583358223345|7.38|151.0|3|1|sense L1MD_dup7744|chr17:20115509-20116075:+|1.0980280721028215|0.006583358223345|7.38|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 500.37982177734375 2 500.324725 998.634898 0.18984 9.4984E-05 0.20497 0.00010255 0.39481 0.00019753 500.3246534980478 107.85 0.111 111.48 111.43 111.54 3.6313 12 7 2 0 0 0 0.72333 1 26044 26044 4.756 4.756 1 1853500 33943 11893 21657 21668 38914 38914 0.1355255056232636 QRRKTVVI 8 Unmodified _QRRKTVVI_ 0 0 0 L1MD_dup7744|chr17:20115509-20116075:+|1.0980280721028215|0.006583358223345|7.38|151.0|3|1|sense L1MD_dup7744|chr17:20115509-20116075:+|1.0980280721028215|0.006583358223345|7.38|151.0|3|1|sense L1MD_dup7744|chr17:20115509-20116075:+|1.0980280721028215|0.006583358223345|7.38|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 500.324725 998.634898 0.30132 0.00015076 -0.80643 -0.00040348 -0.50511 -0.00025272 500.32413225966803 107.86 0.1219 111.53 111.49 111.61 3.6724 0.022323 -0.00084141 NaN 4.756 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1755400 33944 11893 21657 21668 0.1355255056232636 QRRKWGRPR 9 Unmodified _QRRKWGRPR_ 0 0 0 REV__LTR33A__dup1446|chr16:81515694-81516190:+|1.1452601270383036|0.0187147953992311|5.94|151.0|10|1|anti-sense REV__LTR33A__dup1446|chr16:81515694-81516190:+|1.1452601270383036|0.0187147953992311|5.94|151.0|10|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 620.3679809570312 2 620.368321 1238.72209 0.58555 0.00036326 0.21438 0.000133 0.79994 0.00049626 620.367704572337 107.86 0.17107 111.54 111.49 111.66 3.6813 37 17 3 0 0 0 0.42249 1 25474 25474 6.7232 1.4263 1 4245600 + 33945 30902 21658 21669 38915 38915 0.11227769556603562 QRRLFKNQ 8 Unmodified _QRRLFKNQ_ 0 0 0 REV__ENST00000474311.1_1_3:112724385-112727343:-|nuORF REV__ENST00000474311.1_1_3:112724385-112727343:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 545.316650390625 2 545.317432 1088.62031 0.37441 0.00020417 -1.1578 -0.00063139 -0.78342 -0.00042721 545.3166523792182 83.17 0.11991 83.17 83.055 83.175 0 17 10 2 0 0 0 0.82752 1 19711 19711 0.69038 0.69038 1 352330 + 33946 19984 21659 21670 38916 38916 0.07954478414171717 QRRLGRWVKP 10 Unmodified _QRRLGRWVKP_ 0 0 0 REV__MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|69|3|anti-sense REV__MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|69|3|anti-sense MSMS UPN46_class_I_Rep_3 1 648.3934326171875 2 648.394005 1294.77346 NaN NaN NaN NaN NaN NaN NaN 103.94 1 103.94 103.44 104.44 0 0 0 0 0.53105 1 25371 25371 1.4819 0.15237 1 + 33947 31406 21660 21671 38917 38917 0.13786093530620747 QRRLGRWVKP 10 Unmodified _QRRLGRWVKP_ 0 0 0 REV__MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|69|3|anti-sense REV__MER52A_dup1226|chr16:68186905-68188568:-|1.5829404774068276|0.0266663952602074|5.89|151.0|69|3|anti-sense MSMS UPN46_class_I_Rep_3 1 648.3931274414062 2 648.394005 1294.77346 NaN NaN NaN NaN NaN NaN NaN 104.07 1 104.07 103.57 104.57 0 0 0 0 0.53105 1 25409 25409 3.2813 0.54611 1 + 33948 31406 21660 21671 38918 38918 0.13786093530620747 QRRPHWLT 8 Unmodified _QRRPHWLT_ 0 0 0 ENST00000264449.14_2_4:42629066-42658940:-|nuORF ENST00000264449.14_2_4:42629066-42658940:-|nuORF ENST00000264449.14_2_4:42629066-42658940:-|nuORF MSMS UPN48_class_I_Rep_2 6 547.3067626953125 2 547.304324 1092.5941 NaN NaN NaN NaN NaN NaN NaN 33.88 1 37.541 37.041 38.041 3.6607 0 0 0 0.40746 1 5397 5397 0.69038 0 1 33949 5990 21661 21672 38919 38919 0.05150209242697201 QRRPHWLT 8 Unmodified _QRRPHWLT_ 0 0 0 ENST00000264449.14_2_4:42629066-42658940:-|nuORF ENST00000264449.14_2_4:42629066-42658940:-|nuORF ENST00000264449.14_2_4:42629066-42658940:-|nuORF MSMS UPN48_class_I_Rep_2 6 547.3060302734375 2 547.304324 1092.5941 NaN NaN NaN NaN NaN NaN NaN 34.569 1 38.242 37.742 38.742 3.6735 0 0 0 0.40625 1 5586 5586 2.3027 0.24298 1 33950 5990 21661 21672 38920 38920 0.05150209242697201 QRRPLQLSPLR 11 Unmodified _QRRPLQLSPLR_ 0 0 0 REV__ENST00000556658.1_1_15:93609442-93616230:-|nuORF REV__ENST00000556658.1_1_15:93609442-93616230:-|nuORF MSMS UPN48_class_I_Rep_3 7 455.281494140625 3 455.280877 1362.8208 NaN NaN NaN NaN NaN NaN NaN 51.479 1 55.09 54.59 55.59 3.6105 0 0 0 0.38417 1 10554 10554 1.2148 0.10508 1 + 33951 22994 21662 21673 38921 38921 0.15390328010971643 QRRPYRRRRFP 11 Unmodified _QRRPYRRRRFP_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MULTI-MSMS UPN47_class_I_Rep_1 2 529.9779052734375 3 529.978303 1586.91308 -0.11706 -6.204E-05 -0.05269 -2.7925E-05 -0.16975 -8.9965E-05 529.9781512156835 26.464 0.09816 30.226 30.175 30.273 3.7624 11 9 2 0 0 0 0.68583 1 3792 3792 0 0 1 43684 33952 1014 21663 21674 38922 38922 0.1430985086783494 QRRPYRRRRFP 11 Unmodified _QRRPYRRRRFP_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS UPN48_class_I_Rep_2 6 530.3115844726562 3 529.978303 1586.91308 NaN NaN NaN NaN NaN NaN NaN 29.767 1 33.398 32.898 33.898 3.6316 0 0 0 0.38417 1 4272 4272 0 0 1 33953 1014 21663 21674 38923 38923 0.1430985086783494 QRRPYRRRRFP 11 Unmodified _QRRPYRRRRFP_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS UPN48_class_I_Rep_3 7 529.978271484375 3 529.978303 1586.91308 NaN NaN NaN NaN NaN NaN NaN 29.568 1 33.296 32.796 33.796 3.7286 0 0 0 0.38417 1 4162 4162 0 0 1 33954 1014 21663 21674 38924 38924 0.1430985086783494 QRRQKIYK 8 Unmodified _QRRQKIYK_ 0 0 0 REV__LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|26|1|anti-sense REV__LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 560.340087890625 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 105.61 1 105.61 105.11 106.11 0 0 0 0 0.40746 1 25763 25763 0.69038 0.16561 1 + 33955 30787 21664 21675 38925 38925 0.11267337965318802 QRRRAPRRV 9 Unmodified _QRRRAPRRV_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MSMS UPN47_class_I_Rep_2 3 597.8751831054688 2 597.873771 1193.73299 NaN NaN NaN NaN NaN NaN NaN 102.02 1 105.54 105.04 106.04 3.5151 0 0 0 0.4007 1 24858 24858 0.52476 0 1 + 33956 18279 21665 21676 38926 38926 0.14387171930866316 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MSMS UPN46_class_I_Rep_3 1 527.30517578125 2 527.304855 1052.59516 0.33315 0.00017567 0.27442 0.0001447 0.60757 0.00032038 527.304958882748 93.757 0.27181 93.757 93.555 93.827 0 35 25 2 0 0 0 0.48643 2 22693 22693;22735 2.0598 0.21551 1 661720 + 33957 19746 21666 21677 38927;38928 38927 0.07096423611619684 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MSMS UPN46_class_I_Rep_3 1 527.3075561523438 2 527.304855 1052.59516 0.33323 0.00017571 0.47659 0.00025131 0.80982 0.00042702 527.3050196078248 93.948 0.24003 93.948 93.84 94.08 0 29 24 2 0 0 0 0.48643 1 22755 22755 2.0598 0 1 1006800 + 33958 19746 21666 21677 38929 38929 0.07096423611619684 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MSMS UPN47_class_I_Rep_1 2 527.3062133789062 2 527.304855 1052.59516 0.42421 0.00022369 0.53807 0.00028373 0.96228 0.00050742 527.305102356276 90.277 0.54247 93.967 93.637 94.179 3.6899 100 71 2 0 0 0 0.48643 1 22562 22562 2.0598 2.0598 1 92668 + 33959 19746 21666 21677 38930 38930 0.07096423611619684 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MSMS UPN47_class_I_Rep_3 4 527.305419921875 2 527.304855 1052.59516 0.41337 0.00021797 0.41086 0.00021665 0.82423 0.00043462 527.3050263039181 90.383 0.51979 93.78 93.481 94 3.3976 96 68 2 0 0 0 0.48643 2 22600 22600;22631 2.0598 2.0598 1 135940 + 33960 19746 21666 21677 38931;38932 38931 0.07096423611619684 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MSMS UPN48_class_I_Rep_1 5 527.3050537109375 2 527.304855 1052.59516 NaN NaN NaN NaN NaN NaN NaN 89.779 1 93.405 92.905 93.905 3.6255 0 0 0 0.39428 1 21570 21570 2.0598 0.40713 1 + 33961 19746 21666 21677 38933 38933 0.07096423611619684 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 527.304855 1052.59516 0.33315 0.00017567 0.27442 0.0001447 0.60757 0.00032038 527.304958882748 93.757 0.27181 93.757 93.555 93.827 0 0.0049729 -0.00035654 NaN 2.0598 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 661720 + 33962 19746 21666 21677 0.07096423611619684 QRRRPQAAA 9 Unmodified _QRRRPQAAA_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 527.304855 1052.59516 0.30864 0.00016275 0.67956 0.00035833 0.9882 0.00052108 527.3051652381563 90.024 0.60785 93.649 93.413 94.021 3.6255 -0.1031 7.0725E-05 NaN 2.0598 143 77 3 NaN NaN NaN NaN 0 NaN NaN 0 298200 + 33963 19746 21666 21677 0.07096423611619684 QRRRQWRQWRL 11 Unmodified _QRRRQWRQWRL_ 0 0 0 REV__ENSG00000167895|ENST00000318430|TMC8 REV__ENSG00000167895|ENST00000318430|TMC8 MULTI-MSMS UPN46_class_I_Rep_3 1 556.8096923828125 3 556.985457 1667.93454 0.35307 0.00019666 4.0867 0.0022763 4.4398 0.0024729 556.9875697366934 61.845 0.055161 61.845 61.82 61.875 0 6 4 2 0 0 0 0.68478 1 13793 13793 0.094841 0.094841 1 84230 + 33964 20244 21667 21678 38934 38934 0.12729235896586033 QRRRRRRKIEI 11 Unmodified _QRRRRRRKIEI_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS UPN48_class_I_Rep_3 7 523.0009155273438 3 523.001107 1565.98149 0.41773 0.00021847 -0.47195 -0.00024683 -0.05422 -2.8357E-05 523.0007465074048 106.86 0.36248 110.55 110.39 110.76 3.6899 103 53 3 0 0 0 0.68491 1 25197 25197 0.08335 0.08335 1 667270 33965 4516 21668 21679 38935 38935 0.22114095447727777 QRRRTTPAPLA 11 Unmodified _QRRRTTPAPLA_ 0 0 0 REV__nc|ENSG00000159714|Q8WTX9|ZDHHC1 REV__nc|ENSG00000159714|Q8WTX9|ZDHHC1 MSMS UPN48_class_I_Rep_1 5 633.87109375 2 633.873102 1265.73165 NaN NaN NaN NaN NaN NaN NaN 88.921 1 92.544 92.044 93.044 3.6229 0 0 0 0.38417 1 21337 21337 5.2969 0.39987 1 + 33966 32025 21669 21680 38936 38936 0.1094149305145038 QRRSKPGKRR 10 Unmodified _QRRSKPGKRR_ 0 0 0 ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF ENST00000573745.1_1_17:7165530-7166136:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 635.3958740234375 2 634.892161 1267.76977 0.43241 0.00027453 0.63032 0.00040019 1.0627 0.00067472 634.8924526175957 98.54 0.77919 102.15 101.54 102.31 3.6065 258 101 3 0 0 0 0.56354 1 23638 23638 1.3295 0.87119 1 2008700 33967 7523 21670 21681 38937 38937 0.14659423756779688 QRRTRRRPRRR 11 Unmodified _QRRTRRRPRRR_ 0 0 0 ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 532.3353881835938 3 532.000101 1592.97847 0.4731 0.00025169 1.3768 0.00073244 1.8499 0.00098413 532.3352698369803 107.3 0.12112 110.84 110.76 110.88 3.5345 24 16 2 0 0 0 0.6724 1 25954 25954 1.2148 0.80657 1 1200000 33968 5909 21671 21682 38938 38938 0.20570265113542519 QRRTRRRPRRR 11 Unmodified _QRRTRRRPRRR_ 0 0 0 ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 532.0009765625 3 532.000101 1592.97847 0.45679 0.00024301 1.7752 0.00094439 2.232 0.0011874 532.3356212570988 107.3 0.10278 110.84 110.77 110.88 3.5382 34 12 4 0 0 0 0.66092 1 26184 26184 2.2527 1.0379 1 2333100 33969 5909 21671 21682 38939 38939 0.20570265113542519 QRRTRRRPRRR 11 Unmodified _QRRTRRRPRRR_ 0 0 0 ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 532.000101 1592.97847 0.47366 0.00025199 1.3118 0.0006979 1.7855 0.00094989 532.0006923690497 107.26 0.094742 110.93 110.88 110.97 3.6724 0.045723 -0.00049992 NaN 2.2527 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3826500 33970 5909 21671 21682 0.20570265113542519 QRRTRRRPRRR 11 Unmodified _QRRTRRRPRRR_ 0 0 0 ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 532.000101 1592.97847 0.32609 0.00017348 1.888 0.0010044 2.2141 0.0011779 532.0009266104893 107.25 0.12914 110.88 110.82 110.95 3.6299 -0.0062986 0.00041964 NaN 2.2527 50 12 5 NaN NaN NaN NaN 0 NaN NaN 0 12609000 33971 5909 21671 21682 0.20570265113542519 QRRTRRRPRRR 11 Unmodified _QRRTRRRPRRR_ 0 0 0 ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 532.000101 1592.97847 0.43078 0.00022918 1.5252 0.00081141 1.956 0.0010406 532.000809041082 107.22 0.19797 110.9 110.83 111.03 3.6783 0.01252 -0.0001594 NaN 2.2527 45 17 5 NaN NaN NaN NaN 0 NaN NaN 0 5582600 33972 5909 21671 21682 0.20570265113542519 QRRTRRRPRRR 11 Unmodified _QRRTRRRPRRR_ 0 0 0 ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 532.000101 1592.97847 0.51208 0.00027243 1.6074 0.00085512 2.1194 0.0011275 532.0008187317858 107.23 0.11568 110.92 110.85 110.96 3.6899 0.04211 -2.8278E-05 NaN 2.2527 30 9 4 NaN NaN NaN NaN 0 NaN NaN 0 6689600 33973 5909 21671 21682 0.20570265113542519 QRRVKNGIY 9 Unmodified _QRRVKNGIY_ 0 0 0 REV__nc|ENSG00000013503|Q9NW08-2|POLR3B REV__nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-MSMS UPN48_class_I_Rep_1 5 567.33056640625 2 567.330539 1132.64652 0.43501 0.00024679 0.02966 1.6827E-05 0.46467 0.00026362 567.3305113382103 81.93 0.44754 85.505 85.318 85.766 3.5753 85 54 2 0 0 0 0.48643 1 19512 19512 2.0598 0.21551 1 125380 + 33974 17589 21672 21683 38940 38940 0.0855074758567298 QRRVKNGIY 9 Unmodified _QRRVKNGIY_ 0 0 0 REV__nc|ENSG00000013503|Q9NW08-2|POLR3B REV__nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 567.330539 1132.64652 0.4807 0.00027271 -0.44396 -0.00025187 0.036733 2.084E-05 567.3301008944583 81.883 0.32313 85.568 85.465 85.788 3.6851 0.037588 -0.00035819 NaN 2.0598 65 39 2 NaN NaN NaN NaN 0 NaN NaN 0 133340 + 33975 17589 21672 21683 0.0855074758567298 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 546.8406372070312 2 546.841074 1091.66759 0.38742 0.00021186 -1.0469 -0.0005725 -0.6595 -0.00036064 546.840356678877 95.502 0.19426 95.502 95.409 95.603 0 28 18 2 0 0 0 0.25207 1 23202 23202 16.942 2.104 1 4587900 33976 7380 21673 21684 38941 38941 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS UPN46_class_I_Rep_3 1 546.8403930664062 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 95.42 1 95.42 94.92 95.92 0 0 0 0 0.26661 1 23167 23167 12.532 1.7076 1 33977 7380 21673 21684 38942 38942 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS UPN46_class_I_Rep_3 1 546.8391723632812 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 96.113 1 96.113 95.613 96.613 0 0 0 0 0.38478 1 23361 23361 4.3292 0.73274 1 33978 7380 21673 21684 38943 38943 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 546.840576171875 2 546.841074 1091.66759 0.59275 0.00032414 -1.0447 -0.00057126 -0.45191 -0.00024712 546.8400427032034 92.346 0.53715 95.811 95.786 96.323 3.4652 122 78 2 0 0 0 0.33654 2 22842 22842;22882 11.64 1.5664 1 462910 33979 7380 21673 21684 38944;38945 38944 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS UPN47_class_I_Rep_3 4 546.8403930664062 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.999 1 96.404 95.904 96.904 3.4052 0 0 0 0.39428 1 23202 23202 2.0598 0.40713 1 33980 7380 21673 21684 38946 38946 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS UPN48_class_I_Rep_2 6 546.840576171875 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 91.477 1 95.232 94.732 95.732 3.7554 0 0 0 0.19137 1 21782 21782 16.942 2.104 1 33981 7380 21673 21684 38947 38947 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS UPN48_class_I_Rep_2 6 546.8406372070312 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.211 1 95.974 95.474 96.474 3.7629 0 0 0 0.26661 1 21950 21950 12.532 1.7076 1 33982 7380 21673 21684 38948 38948 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MSMS UPN48_class_I_Rep_3 7 546.8399047851562 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.293 1 96.171 95.671 96.671 3.8782 0 0 0 0.19137 1 21884 21884 16.942 2.104 1 33983 7380 21673 21684 38949 38949 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 546.841074 1091.66759 0.53306 0.0002915 -1.5444 -0.00084452 -1.0113 -0.00055302 546.8400865637661 92.092 0.54062 95.813 95.795 96.336 3.7209 0.00073545 -3.7904E-05 NaN 11.64 123 75 2 NaN NaN NaN NaN 0 NaN NaN 0 1492900 33984 7380 21673 21684 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 546.841074 1091.66759 0.53136 0.00029057 -1.4016 -0.00076648 -0.87028 -0.00047591 546.8401704482635 91.952 0.55972 95.657 95.446 96.006 3.7053 0.11934 -0.00019391 NaN 16.942 184 73 4 NaN NaN NaN NaN 0 NaN NaN 0 1882200 33985 7380 21673 21684 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 546.841074 1091.66759 0.58977 0.00032251 -1.3488 -0.00073758 -0.75902 -0.00041507 546.8401540041781 92.07 0.58101 95.535 95.24 95.821 3.4652 -0.0025441 -0.00013611 NaN 16.942 253 82 4 NaN NaN NaN NaN 0 NaN NaN 0 1784700 33986 7380 21673 21684 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 546.841074 1091.66759 0.48843 0.00026709 -1.1736 -0.00064176 -0.68515 -0.00037467 546.8401962429535 92.106 0.96468 95.51 95.263 96.228 3.4034 -0.028031 5.5522E-05 NaN 16.942 297 137 4 NaN NaN NaN NaN 0 NaN NaN 0 1509900 33987 7380 21673 21684 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 546.841074 1091.66759 0.44418 0.0002429 -1.205 -0.00065892 -0.76077 -0.00041602 546.840273269041 91.864 0.91379 95.49 95.176 96.089 3.626 -0.04763 2.1207E-05 NaN 16.942 325 125 4 NaN NaN NaN NaN 0 NaN NaN 0 7482600 33988 7380 21673 21684 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 546.841074 1091.66759 0.48704 0.00026633 -1.1658 -0.0006375 -0.67876 -0.00037117 546.8402697234789 91.719 0.66396 95.482 95.222 95.886 3.7629 -0.055752 6.4035E-05 NaN 16.942 261 95 5 NaN NaN NaN NaN 0 NaN NaN 0 5344700 33989 7380 21673 21684 0.12542757685173456 QRRVRPALP 9 Unmodified _QRRVRPALP_ 0 0 0 ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF ENST00000546828.6_1_12:98909466-98909845:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 546.841074 1091.66759 0.46804 0.00025594 -1.1995 -0.00065592 -0.73143 -0.00039998 546.8402536665494 91.725 0.86326 95.588 95.257 96.12 3.8634 0.050372 2.7205E-05 NaN 16.942 342 121 5 NaN NaN NaN NaN 0 NaN NaN 0 5804500 33990 7380 21673 21684 0.12542757685173456 QRRVVGSL 8 Unmodified _QRRVVGSL_ 0 0 0 REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19 REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19 MULTI-MSMS UPN47_class_I_Rep_1 2 457.7799377441406 2 457.780151 913.545748 0.12019 5.5022E-05 0.1117 5.1133E-05 0.23189 0.00010616 457.78018682324137 81.367 0.8962 84.854 84.512 85.408 3.4874 131 94 2 0 0 0 0.82752 1 20317 20317 4.3292 0 1 142790 + 33991 18068 21674 21685 38950 38950 0.08551715602823151 QRRVVGSL 8 Unmodified _QRRVVGSL_ 0 0 0 REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19 REV__nc|ENSG00000099364|Q6PCT2-2|FBXL19 MULTI-MSMS UPN48_class_I_Rep_2 6 457.7796325683594 2 457.780151 913.545748 0.16843 7.7102E-05 0.077042 3.5268E-05 0.24547 0.00011237 457.7800346919809 81.003 0.27521 84.66 84.494 84.77 3.6567 51 35 2 0 0 0 0.82752 1 19195 19195 2.3027 0 1 188840 + 33992 18068 21674 21685 38951 38951 0.08551715602823151 QRSLKRIIKRH 11 Unmodified _QRSLKRIIKRH_ 0 0 0 Tigger1_dup64|chr1:21115095-21115592:-|1.3203033564796685|0.0370965001055979|5.15|151.0|33|3|anti-sense Tigger1_dup64|chr1:21115095-21115592:-|1.3203033564796685|0.0370965001055979|5.15|151.0|33|3|anti-sense Tigger1_dup64|chr1:21115095-21115592:-|1.3203033564796685|0.0370965001055979|5.15|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 478.975341796875 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 72.308 1 75.872 75.372 76.372 3.5645 0 0 0 0.38417 1 16915 16915 0.094841 0 1 33993 33159 21675 21686 38952 38952 0.20593698547577333 QRTRLAAP 8 Unmodified _QRTRLAAP_ 0 0 0 REV__ENST00000493208.1_1_5:131825145-131826395:-|nuORF REV__ENST00000493208.1_1_5:131825145-131826395:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 456.77215576171875 2 456.772326 911.530098 0.16545 7.5574E-05 -0.083496 -3.8139E-05 0.081955 3.7435E-05 456.77214724280805 80.643 0.59013 84.288 84.096 84.686 3.6446 121 81 2 0 0 0 0.82752 1 19173 19173 2.5775 0 1 656100 + 33994 22643 21676 21687 38953 38953 0.07079429085729316 QRVANPAIA 9 Unmodified _QRVANPAIA_ 0 0 0 REV__ENSG00000120756|ENST00000457734|PLS1 REV__ENSG00000120756|ENST00000457734|PLS1 MULTI-MSMS UPN47_class_I_Rep_1 2 470.2719421386719 2 470.272158 938.529764 0.15831 7.4449E-05 -0.29163 -0.00013715 -0.13332 -6.2697E-05 470.2719540969789 83.281 0.68835 86.819 86.45 87.138 3.5386 125 72 2 0 0 0 0.48643 1 20852 20852 2.0598 0.73022 1 257280 + 33995 18712 21677 21688 38954 38954 0.058040093658974 QRVDLYVLS 9 Unmodified _QRVDLYVLS_ 0 0 0 L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|171|1|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|171|1|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|171|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.776123046875 2 546.806031 1091.59751 0.43481 0.00023775 0.1242 6.7912E-05 0.559 0.00030567 546.806226327823 47.514 0.18401 51.036 50.994 51.178 3.5219 21 19 2 0 0 0 0.43982 1 9425 9425 5.7319 5.7319 1 100330 33996 14138 21678 21689 38955 38955 0.05537414506034111 QRVVVCLL 8 Unmodified _QRVVVCLL_ 0 0 0 L1MB7_dup10716|chr9:36452833-36453207:-|1.3020021100207329|0.004752100454578|8.1|151.0|23|2|anti-sense L1MB7_dup10716|chr9:36452833-36453207:-|1.3020021100207329|0.004752100454578|8.1|151.0|23|2|anti-sense L1MB7_dup10716|chr9:36452833-36453207:-|1.3020021100207329|0.004752100454578|8.1|151.0|23|2|anti-sense MSMS UPN46_class_I_Rep_3 1 465.2855224609375 2 465.28368 928.552807 NaN NaN NaN NaN NaN NaN NaN 84.351 1 84.351 83.851 84.851 0 0 0 0 0.40604 1 20065 20065 2.5775 0 1 33997 10676 21679 21690 38956 38956 0.08567312159027551 QRWAKKPF 8 Unmodified _QRWAKKPF_ 0 0 0 REV__nc|ENSG00000163374|Q9H869-7|YY1AP1 REV__nc|ENSG00000163374|Q9H869-7|YY1AP1 MSMS UPN48_class_I_Rep_3 7 530.8057861328125 2 530.806168 1059.59778 NaN NaN NaN NaN NaN NaN NaN 60.967 1 64.479 63.979 64.979 3.5129 0 0 0 0.40625 1 13435 13435 2.3027 0.4585 1 + 33998 19974 21680 21691 38957 38957 0.07036879016550301 QRWQFYLFNAP 11 Unmodified _QRWQFYLFNAP_ 0 0 0 REV__AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|11|1|anti-sense REV__AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_2 6 490.5812072753906 3 490.582333 1468.72517 NaN NaN NaN NaN NaN NaN NaN 38.074 1 41.79 41.29 42.29 3.7164 0 0 0 0.38417 1 6590 6590 2.2527 0.60484 1 + 33999 17200 21681 21692 38958 38958 0.009555551000858031 QRWQFYLFNAP 11 Unmodified _QRWQFYLFNAP_ 0 0 0 REV__AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|11|1|anti-sense REV__AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 490.5802917480469 3 490.582333 1468.72517 NaN NaN NaN NaN NaN NaN NaN 37.524 1 41.187 40.687 41.687 3.663 0 0 0 0.38417 1 6336 6336 2.4348 0.50728 1 + 34000 17200 21681 21692 38959 38959 0.009555551000858031 QRWQFYLFNAP 11 Unmodified _QRWQFYLFNAP_ 0 0 0 REV__AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|11|1|anti-sense REV__AluSz_dup23046|chr4:39834978-39835244:-|1.1298976548792583|0.0585465285301552|4.27|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 490.5806884765625 3 490.582333 1468.72517 NaN NaN NaN NaN NaN NaN NaN 37.65 1 41.313 40.813 41.813 3.663 0 0 0 0.38417 1 6372 6372 1.1098 0.26481 1 + 34001 17200 21681 21692 38960 38960 0.009555551000858031 QRWVDWHI 8 Unmodified _QRWVDWHI_ 0 0 0 HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|259|2|anti-sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|259|2|anti-sense HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|259|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 570.26806640625 2 570.290882 1138.56721 0.38878 0.00022172 -1.1659 -0.00066488 -0.77708 -0.00044316 570.2900985282918 68.079 0.20612 71.348 71.156 71.362 3.2696 19 15 2 0 0 0 0.72333 1 16424 16424 2.3027 0.24298 1 118460 34002 8002 21682 21693 38961 38961 0.0034710063152942894 QRYDLQIF 8 Unmodified _QRYDLQIF_ 0 0 0 L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense;L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|90|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7852172851562 2 541.785099 1081.55564 0.50154 0.00027173 -0.10261 -5.5594E-05 0.39892 0.00021613 541.7848733294625 57.777 0.20789 61.271 61.137 61.345 3.4942 21 17 2 0 0 0 0.82752 1 12561 12561 14.838 0 1 68493 34003 10229 21683 21694 38962 38962 0.018128588175159166 QRYDLQIF 8 Unmodified _QRYDLQIF_ 0 0 0 L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense;L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|90|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense MSMS UPN48_class_I_Rep_1 5 541.78515625 2 541.785099 1081.55564 NaN NaN NaN NaN NaN NaN NaN 57.641 1 61.135 60.635 61.635 3.4942 0 0 0 0.35715 1 12507 12507 20.454 0 1 34004 10229 21683 21694 38963 38963 0.018128588175159166 QRYDLQIF 8 Unmodified _QRYDLQIF_ 0 0 0 L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense;L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|90|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.7855834960938 2 541.785099 1081.55564 0.58106 0.00031481 -0.44592 -0.00024159 0.13514 7.3214E-05 541.7848202261086 57.626 0.34225 61.14 61.048 61.39 3.5142 39 26 2 0 0 0 0.82752 3 12458 12458;12475;12534 14.838 0 1 131610 34005 10229 21683 21694 38964;38965;38966 38964 0.018128588175159166 QRYDLQIF 8 Unmodified _QRYDLQIF_ 0 0 0 L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense;L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|90|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 541.785099 1081.55564 0.50154 0.00027173 -0.10261 -5.5594E-05 0.39892 0.00021613 541.7848733294625 57.777 0.20789 61.271 61.137 61.345 3.4942 0.065682 0.00016609 NaN 14.838 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 68493 34006 10229 21683 21694 0.018128588175159166 QRYDLQIF 8 Unmodified _QRYDLQIF_ 0 0 0 L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense;L1MB2_dup2974|chr6:87227427-87229413:-|3.906257435769231|0.2789400788177148|3.81|151.0|90|1|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|83|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 541.785099 1081.55564 0.58106 0.00031481 -0.44592 -0.00024159 0.13514 7.3214E-05 541.7848202261086 57.626 0.34225 61.14 61.048 61.39 3.5142 -0.065682 -0.00020591 NaN 14.838 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 131610 34007 10229 21683 21694 0.018128588175159166 QRYKEYYF 8 Unmodified _QRYKEYYF_ 0 0 0 L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 598.7896728515625 2 598.790381 1195.56621 NaN NaN NaN NaN NaN NaN NaN 70.448 1 73.966 73.466 74.466 3.5185 0 0 0 0.40746 1 16300 16300 0.69038 0 1 34008 13629 21684 21695 38967 38967 -0.02375158528047905 QRYRYMYE 8 Unmodified _QRYRYMYE_ 0 0 0 REV__nc|ENSG00000253188|A0A0A0MS04|TRBV6-7 REV__nc|ENSG00000253188|A0A0A0MS04|TRBV6-7 MSMS UPN48_class_I_Rep_3 7 604.7799072265625 2 604.77949 1207.54443 NaN NaN NaN NaN NaN NaN NaN 40.584 1 44.235 43.735 44.735 3.6509 0 0 0 0.40604 1 7235 7235 2.5775 0.51773 1 + 34009 32118 21685 21696 38968 38968 -0.05104286548248638 QRYWPKIF 8 Unmodified _QRYWPKIF_ 0 0 0 L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|188|2|anti-sense;L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|70|1|anti-sense L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|188|2|anti-sense L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|188|2|anti-sense MSMS UPN48_class_I_Rep_1 5 569.3153076171875 2 569.313826 1136.6131 NaN NaN NaN NaN NaN NaN NaN 59.239 1 62.719 62.219 63.219 3.4801 0 0 0 0.39624 1 12999 12999 9.3474 0 1 34010 13715 21686 21697 38969 38969 0.050257458137366484 QRYWPKIF 8 Unmodified _QRYWPKIF_ 0 0 0 L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|188|2|anti-sense;L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|70|1|anti-sense L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|188|2|anti-sense L1PA7_dup2382|chr3:101427697-101431558:-|1.8266102009264695|0.041350069450504|5.47|151.0|188|2|anti-sense MSMS UPN48_class_I_Rep_3 7 569.3153686523438 2 569.313826 1136.6131 NaN NaN NaN NaN NaN NaN NaN 59.045 1 62.568 62.068 63.068 3.5231 0 0 0 0.39624 1 12852 12852 9.3474 0 1 34011 13715 21686 21697 38970 38970 0.050257458137366484 QSAPCWPGLSC 11 Unmodified _QSAPCWPGLSC_ 0 0 0 REV__THE1B-int_dup1825|chr6:87368637-87370196:-|1.174922806995638|0.047405103832825|4.63|151.0|6|1|sense REV__THE1B-int_dup1825|chr6:87368637-87370196:-|1.174922806995638|0.047405103832825|4.63|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.7468872070312 2 574.746802 1147.47905 0.52982 0.00030451 -0.46288 -0.00026604 0.066947 3.8477E-05 574.7465537854781 58.596 0.48433 62.083 61.875 62.36 3.487 40 31 2 0 0 0 0.62748 1 12862 12862 4.5289 2.0304 1 74966 + 34012 32248 21687 21698 38971 38971 -0.08879024065618069 QSAPCWPGLSC 11 Unmodified _QSAPCWPGLSC_ 0 0 0 REV__THE1B-int_dup1825|chr6:87368637-87370196:-|1.174922806995638|0.047405103832825|4.63|151.0|6|1|sense REV__THE1B-int_dup1825|chr6:87368637-87370196:-|1.174922806995638|0.047405103832825|4.63|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.7464599609375 2 574.746802 1147.47905 0.57083 0.00032809 -0.046246 -2.658E-05 0.52459 0.00030151 574.7467173476803 58.627 0.43753 62.125 61.885 62.322 3.4987 32 24 2 0 0 0 0.65821 1 12780 12780 2.4985 0 1 76585 + 34013 32248 21687 21698 38972 38972 -0.08879024065618069 QSAPHPIHSAR 11 Unmodified _QSAPHPIHSAR_ 0 0 0 REV__ENST00000512018.5_1_4:5053518-5053569:+|nuORF REV__ENST00000512018.5_1_4:5053518-5053569:+|nuORF MSMS UPN47_class_I_Rep_2 3 600.81396484375 2 600.815253 1199.61595 NaN NaN NaN NaN NaN NaN NaN 74.635 1 77.948 77.448 78.448 3.3127 0 0 0 0.38417 1 18399 18399 0.96228 0.36078 1 + 34014 22744 21688 21699 38973 38973 0.02412969200599946 QSAPHPIHSAR 11 Unmodified _QSAPHPIHSAR_ 0 0 0 REV__ENST00000512018.5_1_4:5053518-5053569:+|nuORF REV__ENST00000512018.5_1_4:5053518-5053569:+|nuORF MSMS UPN47_class_I_Rep_2 3 600.8134155273438 2 600.815253 1199.61595 NaN NaN NaN NaN NaN NaN NaN 74.902 1 78.215 77.715 78.715 3.3127 0 0 0 0.38417 1 18472 18472 2.4985 0.65425 1 + 34015 22744 21688 21699 38974 38974 0.02412969200599946 QSCCCCCCC 9 Unmodified _QSCCCCCCC_ 0 0 0 nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF nc|ENSG00000231721|A0A455ZAR2|LINC-PINT nc|ENSG00000231721|A0A455ZAR2|LINC-PINT MSMS UPN46_class_I_Rep_3 1 478.0882568359375 2 478.090007 954.165462 NaN NaN NaN NaN NaN NaN NaN 27.355 1 27.355 26.855 27.855 0 0 0 0 0.4029 1 4052 4052 0 0 1 34016 6814 21689 21700 38975 38975 -0.3134541602981926 QSCCCSHELQC 11 Unmodified _QSCCCSHELQC_ 0 0 0 REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|86|1|anti-sense REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|86|1|anti-sense MSMS UPN48_class_I_Rep_1 5 620.716552734375 2 620.714318 1239.41408 NaN NaN NaN NaN NaN NaN NaN 118.4 1 122.01 121.51 122.51 3.6189 0 0 0 0.38417 1 28877 28877 1.1933 0.59184 1 + 34017 17382 21690 21701 38976 38976 -0.19604709925442876 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN46_class_I_Rep_3 1 612.1809692382812 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 115.33 1 115.33 114.83 115.83 0 0 0 0 0.38417 1 28520 28520 0 0 1 34018 4581 21691 21702 38977 38977 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_1 2 612.1817626953125 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 116.88 1 120.48 119.98 120.98 3.6036 0 0 0 0.38417 1 28958 28958 1.0715 0.76443 1 34019 4581 21691 21702 38978 38978 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_2 3 612.1813354492188 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 36.557 1 39.955 39.455 40.455 3.3988 0 0 0 0.38417 1 6870 6870 0.30703 0.30703 1 34020 4581 21691 21702 38979 38979 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN47_class_I_Rep_3 4 612.18212890625 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 118.68 1 122.11 121.61 122.61 3.4238 0 0 0 0.38417 1 29279 29279 0.23584 0.23584 1 34021 4581 21691 21702 38980 38980 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1814575195312 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 17.932 1 21.458 20.958 21.958 3.5261 0 0 0 0.38417 1 1123 1123 1.0715 0.76443 1 34022 4581 21691 21702 38981 38981 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1818237304688 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 115.14 1 118.77 118.27 119.27 3.6282 0 0 0 0.38417 1 28005 28005 0.30703 0.30703 1 34023 4581 21691 21702 38982 38982 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_1 5 612.1817626953125 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 119.01 1 122.63 122.13 123.13 3.6189 0 0 0 0.38417 1 29043 29043 0.23584 0.23584 1 34024 4581 21691 21702 38983 38983 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1817626953125 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 21.679 1 25.325 24.825 25.825 3.6459 0 0 0 0.38417 1 2091 2091 0.23584 0.23584 1 34025 4581 21691 21702 38984 38984 -0.2953604792196529 QSCCSCMCDED 11 Unmodified _QSCCSCMCDED_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS UPN48_class_I_Rep_2 6 612.1817626953125 2 612.160727 1222.3069 NaN NaN NaN NaN NaN NaN NaN 118.35 1 122.01 121.51 122.51 3.6627 0 0 0 0.38417 1 28375 28375 0 0 1 34026 4581 21691 21702 38985 38985 -0.2953604792196529 QSCSHKRKL 9 Unmodified _QSCSHKRKL_ 0 0 0 REV__L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|168|3|sense REV__L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|168|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 543.7960205078125 2 543.795475 1085.5764 0.58335 0.00031722 0.43138 0.00023458 1.0147 0.0005518 543.7956428164946 60.768 1.0674 64.241 63.78 64.847 3.4737 273 87 4 0 0 0 0.11683 3 13409 13409;13449;13527 30.637 30.637 1 3646300 + 34027 29754 21692 21703 38986;38987;38988 38986 0.03703125925540007 QSCSHKRKL 9 Unmodified _QSCSHKRKL_ 0 0 0 REV__L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|168|3|sense REV__L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|168|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 543.795475 1085.5764 0.45068 0.00024508 -0.50116 -0.00027253 -0.050471 -2.7446E-05 543.7955344334987 60.371 0.041752 63.769 63.748 63.79 3.3982 -0.24665 -0.0010905 NaN 30.637 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 36683 + 34028 29754 21692 21703 0.03703125925540007 QSCSHKRKL 9 Unmodified _QSCSHKRKL_ 0 0 0 REV__L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|168|3|sense REV__L1PA5_dup3712|chr5:80840910-80847049:-|1.3567133943632763|0.0424496899066132|5.0|151.0|168|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 543.795475 1085.5764 0.4461 0.00024259 0.66976 0.00036421 1.1159 0.0006068 543.7954294954006 60.671 0.055771 63.936 63.893 63.949 3.2654 -0.079804 0.00018303 NaN 30.637 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 36284 + 34029 29754 21692 21703 0.03703125925540007 QSDAYSEIAY 10 Unmodified _QSDAYSEIAY_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS UPN47_class_I_Rep_1 2 573.7515869140625 2 573.751118 1145.48768 -0.11142 -6.3925E-05 0.36603 0.00021001 0.25461 0.00014609 573.7512963414551 22.089 0.66816 25.764 25.424 26.092 3.6749 104 63 2 0 0 0 0.56155 1 2593 2593 2.7352 0 1 97020 34030 2868 21693 21704 38989 38989 -0.0792405562381191 QSDIFAWV 8 Unmodified _QSDIFAWV_ 0 0 0 LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|32|2|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|32|2|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 483.2375793457031 2 483.239993 964.465432 NaN NaN NaN NaN NaN NaN NaN 35.841 1 39.517 39.017 40.017 3.6762 0 0 0 0.40604 1 6620 6620 2.5775 0 1 34031 15661 21694 21705 38990 38990 -0.018221905109157888 QSDIFAWV 8 Unmodified _QSDIFAWV_ 0 0 0 LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|32|2|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|32|2|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|32|2|sense MSMS UPN47_class_I_Rep_2 3 483.23785400390625 2 483.239993 964.465432 NaN NaN NaN NaN NaN NaN NaN 35.35 1 38.775 38.275 39.275 3.4253 0 0 0 0.40604 1 6506 6506 2.5775 0 1 34032 15661 21694 21705 38991 38991 -0.018221905109157888 QSDPAPLQH 9 Unmodified _QSDPAPLQH_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS UPN47_class_I_Rep_2 3 496.7436828613281 2 496.743431 991.472308 -0.14745 -7.3244E-05 0.38305 0.00019028 0.2356 0.00011703 496.7436150436282 23.063 0.45217 26.508 26.267 26.72 3.4447 72 38 2 0 0 0 0.17897 2 2850 2850;2860 22.736 4.6753 1 104680 34033 4058 21695 21706 38992;38993 38992 -0.023768776303313643 QSDSLYRE 8 Unmodified _QSDSLYRE_ 0 0 0 REV__L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|23|2|sense REV__L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.2328186035156 2 499.232896 996.451239 -0.2604 -0.00013 0.33749 0.00016848 0.077084 3.8483E-05 499.232971444828 32.748 0.8866 36.461 36.097 36.984 3.7131 153 71 3 0 0 0 0.82752 5 5661 5625;5661;5701;5738;5761 15.248 1.6336 1 358460 + 34034 28673 21696 21707 38994;38995;38996;38997;38998 38995 -0.04712887729863269 QSDSLYRE 8 Unmodified _QSDSLYRE_ 0 0 0 REV__L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|23|2|sense REV__L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.2329406738281 2 499.232896 996.451239 -0.17067 -8.5203E-05 0.30482 0.00015218 0.13415 6.6974E-05 499.2329403948486 32.914 0.92601 36.369 36.057 36.983 3.4547 160 73 3 0 0 0 0.82752 4 5739 5739;5776;5813;5851 22.736 2.3217 1 368580 + 34035 28673 21696 21707 38999;39000;39001;39002 38999 -0.04712887729863269 QSDSLYRE 8 Unmodified _QSDSLYRE_ 0 0 0 REV__L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|23|2|sense REV__L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.2327880859375 2 499.232896 996.451239 -0.3516 -0.00017553 0.39917 0.00019928 0.047567 2.3747E-05 499.2330197324123 33.144 0.95938 36.431 36.074 37.033 3.2867 173 73 3 0 0 0 0.82752 5 5793 5793;5829;5863;5901;5942 32.786 2.9451 1 310250 + 34036 28673 21696 21707 39003;39004;39005;39006;39007 39003 -0.04712887729863269 QSDYFRALY 9 Unmodified _QSDYFRALY_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS UPN47_class_I_Rep_1 2 581.7801513671875 2 581.780013 1161.54547 0.35202 0.0002048 -0.0030591 -1.7797E-06 0.34896 0.00020302 581.7799925013048 56.208 0.49913 59.687 59.525 60.024 3.4785 39 24 2 0 0 0 0.21527 3 12821 12821;12864;12877 19.257 7.6167 1 125500 34037 1301 21697 21708 39008;39009;39010 39008 -0.028837489077204737 QSDYFRALY 9 Unmodified _QSDYFRALY_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS UPN47_class_I_Rep_3 4 581.778564453125 2 581.780013 1161.54547 0.39009 0.00022694 -0.18039 -0.00010495 0.2097 0.000122 581.7798726372246 56.728 0.49336 59.9 59.543 60.036 3.1721 39 28 2 0 0 0 0.21527 1 13072 13072 19.257 7.6167 1 93533 34038 1301 21697 21708 39011 39011 -0.028837489077204737 QSDYFRALY 9 Unmodified _QSDYFRALY_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MATCH UPN47_class_I_Rep_2 3 2 581.780013 1161.54547 0.51844 0.00030162 -0.52714 -0.00030668 -0.0087021 -5.0627E-06 581.7796429250401 56.605 0.47806 59.905 59.575 60.053 3.3009 0.074626 -0.00033107 NaN 19.257 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 105980 34039 1301 21697 21708 -0.028837489077204737 QSDYYASYY 9 Unmodified _QSDYYASYY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS UPN47_class_I_Rep_1 2 580.2332153320312 2 580.232561 1158.45057 0.25849 0.00014998 0.052339 3.0369E-05 0.31083 0.00018035 580.2324874838074 51.166 0.34675 54.759 54.504 54.85 3.5932 27 16 2 0 0 0 0.32682 1 11235 11235 12.241 4.3305 1 77344 34040 3505 21698 21709 39012 39012 -0.1223172716956924 QSDYYASYY 9 Unmodified _QSDYYASYY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 580.232561 1158.45057 0.49839 0.00028918 -0.5883 -0.00034135 -0.089914 -5.2171E-05 580.2322913088622 51.36 0.4763 54.699 54.464 54.94 3.3386 -0.03008 -0.00025963 NaN 12.241 28 23 2 NaN NaN NaN NaN 0 NaN NaN 0 62845 34041 3505 21698 21709 -0.1223172716956924 QSETLSHSSW 10 Unmodified _QSETLSHSSW_ 0 0 0 REV__MER52A_dup99|chr2:23835971-23837653:-|3.0736942178539004|0.0601017878688715|5.68|151.0|25|3|sense REV__MER52A_dup99|chr2:23835971-23837653:-|3.0736942178539004|0.0601017878688715|5.68|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 581.2617797851562 2 581.262185 1160.50982 NaN NaN NaN NaN NaN NaN NaN 31.291 1 35.02 34.52 35.52 3.7293 0 0 0 0.53105 1 5230 5230 2.7352 0.15772 1 + 34042 31429 21699 21710 39013 39013 -0.06401831155380933 QSFDQLFQL 9 Unmodified _QSFDQLFQL_ 0 0 0 ENSG00000126861|ENST00000247271|OMG ENSG00000126861|ENST00000247271|OMG ENSG00000126861|ENST00000247271|OMG MULTI-MSMS UPN48_class_I_Rep_1 5 563.2827758789062 2 563.282389 1124.55022 0.45036 0.00025368 -0.35381 -0.0001993 0.096552 5.4386E-05 563.2822902896014 85.69 0.096825 89.296 89.249 89.346 3.6059 15 10 2 0 0 0 0.35123 1 20505 20505 10.8 0 1 58413 34043 2555 21700 21711 39014 39014 -0.007068647649475679 QSGQNLHHH 9 Unmodified _QSGQNLHHH_ 0 0 0 REV__ENST00000520864.5_1_5:170395310-170632776:+|nuORF REV__ENST00000520864.5_1_5:170395310-170632776:+|nuORF MSMS UPN47_class_I_Rep_2 3 529.251708984375 2 529.249746 1056.48494 NaN NaN NaN NaN NaN NaN NaN 33.118 1 36.573 36.073 37.073 3.4547 0 0 0 0.39518 1 5826 5826 1.8442 0.36234 1 + 34044 22785 21701 21712 39015 39015 -0.041044214474368346 QSGSLLVNFGN 11 Unmodified _QSGSLLVNFGN_ 0 0 0 REV__ENSG00000165891|ENST00000322886|E2F7 REV__ENSG00000165891|ENST00000322886|E2F7 MULTI-MSMS UPN47_class_I_Rep_1 2 568.3033447265625 2 568.290745 1134.56694 0.031716 1.8024E-05 0.013097 7.4429E-06 0.044813 2.5467E-05 568.2907816032504 42.979 0.55737 46.666 46.48 47.038 3.6875 67 38 2 0 0 0 0.62748 1 8861 8861 4.5289 0.58447 1 75256 + 34045 20141 21702 21713 39016 39016 0.005036361210159157 QSGSLLVNFGN 11 Unmodified _QSGSLLVNFGN_ 0 0 0 REV__ENSG00000165891|ENST00000322886|E2F7 REV__ENSG00000165891|ENST00000322886|E2F7 MULTI-MSMS UPN47_class_I_Rep_2 3 568.3026733398438 2 568.290745 1134.56694 0.13306 7.5619E-05 -0.29099 -0.00016537 -0.15793 -8.9749E-05 568.2906592393135 43.406 0.75481 46.764 46.443 47.198 3.358 59 46 2 0 0 0 0.65821 1 9000 9000 2.4985 0.19575 1 74100 + 34046 20141 21702 21713 39017 39017 0.005036361210159157 QSHQFSVF 8 Unmodified _QSHQFSVF_ 0 0 0 REV__Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|91|3|anti-sense REV__Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|91|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.2347717285156 2 490.235242 978.45593 -0.30909 -0.00015153 0.24929 0.00012221 -0.059798 -2.9315E-05 490.23531441859564 38.265 0.98372 41.507 41.133 42.117 3.2414 90 74 2 0 0 0 0.82752 1 7457 7457 16.942 2.3606 1 98333 + 34047 32389 21703 21714 39018 39018 -0.034159587964154525 QSIEFNGFS 9 Unmodified _QSIEFNGFS_ 0 0 0 L1MB8_dup2516|chr3:11436534-11437086:+|2.257894536729836|0.0177888296351482|6.99|151.0|35|2|anti-sense L1MB8_dup2516|chr3:11436534-11437086:+|2.257894536729836|0.0177888296351482|6.99|151.0|35|2|anti-sense L1MB8_dup2516|chr3:11436534-11437086:+|2.257894536729836|0.0177888296351482|6.99|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.7377319335938 2 514.737814 1027.46108 0.042944 2.2105E-05 0.25815 0.00013288 0.30109 0.00015498 514.7378836194646 64.623 0.48003 67.879 67.72 68.2 3.2556 55 37 2 0 0 0 0.31407 1 15430 15430 13.042 0.51092 1 110140 34048 10979 21704 21715 39019 39019 -0.05155699724468832 QSIEFNGFS 9 Unmodified _QSIEFNGFS_ 0 0 0 L1MB8_dup2516|chr3:11436534-11437086:+|2.257894536729836|0.0177888296351482|6.99|151.0|35|2|anti-sense L1MB8_dup2516|chr3:11436534-11437086:+|2.257894536729836|0.0177888296351482|6.99|151.0|35|2|anti-sense L1MB8_dup2516|chr3:11436534-11437086:+|2.257894536729836|0.0177888296351482|6.99|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.738037109375 2 514.737814 1027.46108 0.26753 0.00013771 -0.083161 -4.2806E-05 0.18437 9.4902E-05 514.7377510620313 64.806 0.45723 67.985 67.691 68.148 3.1795 56 36 2 0 0 0 0.36392 1 15457 15457 10.074 1.4806 1 76880 34049 10979 21704 21715 39020 39020 -0.05155699724468832 QSIELTAYY 9 Unmodified _QSIELTAYY_ 0 0 0 REV__L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|3|1|sense REV__L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.7706298828125 2 544.268947 1086.52334 0.428 0.00023295 -0.136 -7.4022E-05 0.29199 0.00015892 544.2687554308251 62.697 0.78913 66.056 65.725 66.514 3.3595 130 50 3 0 0 0 0.052902 1 14714 14714 47.749 3.8904 1 577940 + 34050 27869 21705 21716 39021 39021 -0.016459733761621465 QSIELTAYY 9 Unmodified _QSIELTAYY_ 0 0 0 REV__L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|3|1|sense REV__L1ME2_dup6245|chr8:55906947-55907556:+|5.492243931580449|0.0089708774380764|9.26|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.2694702148438 2 544.268947 1086.52334 0.396 0.00021553 -0.0032293 -1.7576E-06 0.39277 0.00021377 544.2688424322087 62.938 0.75442 66.194 65.852 66.607 3.2558 124 49 3 0 0 0 0.032038 1 14973 14973 56.177 0 1 681300 + 34051 27869 21705 21716 39022 39022 -0.016459733761621465 QSIKKIKVKKY 11 Unmodified _QSIKKIKVKKY_ 0 0 0 REV__AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|6|2|sense REV__AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 454.9676208496094 3 454.965895 1361.87586 NaN NaN NaN NaN NaN NaN NaN 40.5 1 44.005 43.505 44.505 3.5048 0 0 0 0.38417 1 7276 7276 0.40827 0 1 + 34052 17054 21706 21717 39023 39023 0.2093932175887403 QSIKKIKVKKY 11 Unmodified _QSIKKIKVKKY_ 0 0 0 REV__AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|6|2|sense REV__AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 454.967529296875 3 454.965895 1361.87586 NaN NaN NaN NaN NaN NaN NaN 42.597 1 46.105 45.605 46.605 3.5079 0 0 0 0.38417 1 7897 7897 0.40827 0 1 + 34053 17054 21706 21717 39024 39024 0.2093932175887403 QSIKKIKVKKY 11 Unmodified _QSIKKIKVKKY_ 0 0 0 REV__AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|6|2|sense REV__AluJr_dup71390|chr17:30785499-30785808:+|1.3436692382089317|0.1346374258899164|3.32|151.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 454.9677429199219 3 454.965895 1361.87586 NaN NaN NaN NaN NaN NaN NaN 42.076 1 45.718 45.218 46.218 3.6415 0 0 0 0.38417 1 7670 7670 0.40827 0 1 + 34054 17054 21706 21717 39025 39025 0.2093932175887403 QSINNQLSY 9 Unmodified _QSINNQLSY_ 0 0 0 REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|22|2|sense REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|22|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 533.7620239257812 2 533.76182 1065.50909 0.13185 7.0375E-05 0.22141 0.00011818 0.35325 0.00018855 533.7620566885023 32.385 0.21902 32.385 32.307 32.526 0 26 15 2 0 0 0 0.46869 1 5534 5534 3.9444 0 1 59842 + 34055 17331 21707 21718 39026 39026 -0.021046258044179922 QSINNQLSY 9 Unmodified _QSINNQLSY_ 0 0 0 REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|22|2|sense REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|22|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 533.76182 1065.50909 0.13185 7.0375E-05 0.22141 0.00011818 0.35325 0.00018855 533.7620566885023 32.385 0.21902 32.385 32.307 32.526 0 0.11422 7.8305E-05 NaN 3.9444 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 59842 + 34056 17331 21707 21718 -0.021046258044179922 QSINNQLSY 9 Unmodified _QSINNQLSY_ 0 0 0 REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|22|2|sense REV__Charlie1a_dup4322|chr12:121446406-121447240:+|1.0561819825825705|0.2731614708722166|1.95|151.0|22|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 533.76182 1065.50909 -0.063613 -3.3954E-05 0.10644 5.6814E-05 0.042828 2.286E-05 533.7619379595051 28.658 0.29635 32.156 31.963 32.26 3.4986 -0.11422 -4.4422E-05 NaN 3.9444 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 36260 + 34057 17331 21707 21718 -0.021046258044179922 QSKIWKALRHR 11 Unmodified _QSKIWKALRHR_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|130|3|sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|130|3|sense MSMS UPN48_class_I_Rep_3 7 474.95184326171875 3 474.952872 1421.83679 NaN NaN NaN NaN NaN NaN NaN 102.61 1 106.39 105.89 106.89 3.776 0 0 0 0.38417 1 24245 24245 1.3296 0.82369 1 + 34058 28867 21708 21719 39027 39027 0.14274034247841882 QSKIWNGLR 9 Unmodified _QSKIWNGLR_ 0 0 0 REV__L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|141|3|sense REV__L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|141|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 551.31298828125 2 551.311815 1100.60908 0.62369 0.00034385 1.7581 0.00096924 2.3818 0.0013131 551.8145347398003 108.72 0.18964 112.26 112.17 112.36 3.5333 30 17 2 0 0 0 0.43153 1 26383 26383 6.2058 0 1 6326400 + 34059 30184 21709 21720 39028 39028 0.06279656320020877 QSKIWNGLR 9 Unmodified _QSKIWNGLR_ 0 0 0 REV__L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|141|3|sense REV__L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|141|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 551.311815 1100.60908 0.62369 0.00034385 1.7581 0.00096924 2.3818 0.0013131 551.8145347398003 108.72 0.18964 112.26 112.17 112.36 3.5333 -0.080519 0.00013041 NaN 6.2058 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 6326400 + 34060 30184 21709 21720 0.06279656320020877 QSKIWNGLR 9 Unmodified _QSKIWNGLR_ 0 0 0 REV__L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|141|3|sense REV__L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|141|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 551.311815 1100.60908 0.499 0.0002751 1.5625 0.00086141 2.0615 0.0011365 551.3125520214797 108.73 0.1106 112.27 112.22 112.33 3.5382 -0.063573 -8.5244E-05 NaN 6.2058 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4500800 + 34061 30184 21709 21720 0.06279656320020877 QSKSPSQTLI 10 Unmodified _QSKSPSQTLI_ 0 0 0 REV__L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|17|2|sense REV__L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 544.81591796875 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 13.615 1 13.615 13.115 14.115 0 0 0 0 0.53105 1 426 426 2.4985 0.19575 1 + 34062 24384 21710 21721 39029 39029 0.04704806780819126 QSKYIPKI 8 Unmodified _QSKYIPKI_ 0 0 0 REV__ENST00000580511.5_1_6:105585755-105602270:+|nuORF REV__ENST00000580511.5_1_6:105585755-105602270:+|nuORF MSMS UPN47_class_I_Rep_2 3 488.79541015625 2 488.794935 975.575317 NaN NaN NaN NaN NaN NaN NaN 66.038 1 69.296 68.796 69.796 3.2588 0 0 0 0.40643 1 15840 15840 2.0598 0 1 + 34063 23125 21711 21722 39030 39030 0.08655234828268021 QSLIKNKAL 9 Unmodified _QSLIKNKAL_ 0 0 0 Tigger1_dup331|chr1:84151111-84153446:-|1.166868808680536|0.0307678819833663|5.25|151.0|57|3|sense Tigger1_dup331|chr1:84151111-84153446:-|1.166868808680536|0.0307678819833663|5.25|151.0|57|3|sense Tigger1_dup331|chr1:84151111-84153446:-|1.166868808680536|0.0307678819833663|5.25|151.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.8190002441406 2 507.818941 1013.62333 0.1307 6.6374E-05 -0.26384 -0.00013398 -0.13314 -6.761E-05 507.8187897129588 63.277 0.86002 66.533 66.217 67.077 3.2558 123 66 2 0 0 0 0.23293 1 15083 15083 18.146 0 1 263130 34064 33076 21712 21723 39031 39031 0.11706308748307492 QSLILKAICAR 11 Unmodified _QSLILKAICAR_ 0 0 0 REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|29|1|sense REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|29|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 405.7452087402344 3 405.912914 1214.71691 -0.24866 -0.00010094 -2.1367 -0.00086732 -2.3854 -0.00096826 406.2468099646159 27.695 0.2462 27.695 27.496 27.742 0 23 18 2 0 0 0 22.551 1 4137 4137 2.6312 0.72486 1 138880 + 34065 29764 21713 21724 39032 39032 0.11814284859065083 QSLLRYLIV 9 Unmodified _QSLLRYLIV_ 0 0 0 REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|118|3|sense REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|118|3|sense MSMS UPN47_class_I_Rep_2 3 552.8421020507812 2 552.842416 1103.67028 NaN NaN NaN NaN NaN NaN NaN 66.307 1 69.566 69.066 70.066 3.2588 0 0 0 0.40098 1 15922 15922 0.45834 0 1 + 34066 23765 21714 21725 39033 39033 0.12259168299442535 QSLLTRLAL 9 Unmodified _QSLLTRLAL_ 0 0 0 REV__nc|ENSG00000164122|Q8WWX0-2|ASB5 REV__nc|ENSG00000164122|Q8WWX0-2|ASB5 MULTI-MSMS UPN47_class_I_Rep_2 3 507.8186340332031 2 507.818941 1013.62333 0.1307 6.6374E-05 -0.26384 -0.00013398 -0.13314 -6.761E-05 507.8187897129588 63.277 0.86002 66.533 66.217 67.077 3.2558 123 66 2 0 0 0 0.32682 1 15044 15044 12.241 0 1 263130 + 34067 20035 21715 21726 39034 39034 0.11706308748307492 QSLLTRLAL 9 Unmodified _QSLLTRLAL_ 0 0 0 REV__nc|ENSG00000164122|Q8WWX0-2|ASB5 REV__nc|ENSG00000164122|Q8WWX0-2|ASB5 MULTI-MSMS UPN47_class_I_Rep_3 4 507.8187255859375 2 507.818941 1013.62333 0.23319 0.00011842 -0.31546 -0.0001602 -0.082266 -4.1776E-05 507.81879067829215 63.366 0.7648 66.536 66.159 66.924 3.1698 103 58 2 0 0 0 0.32682 1 15032 15032 12.241 0 1 286820 + 34068 20035 21715 21726 39035 39035 0.11706308748307492 QSLLVLPALWL 11 Unmodified _QSLLVLPALWL_ 0 0 0 REV__MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|190|2|anti-sense REV__MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|190|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.89013671875 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.87 1 109.58 109.08 110.08 3.702 0 0 0 0.38417 1 24979 24979 1.4819 0.28856 1 + 34069 31489 21716 21727 39036 39036 0.1432858353912252 QSLREYMCVD 10 Unmodified _QSLREYMCVD_ 0 0 0 ENST00000555902.6_1_14:21458708-21463066:+|nuORF;nc|ENSG00000165792|Q9H7H0-2|METTL17;ENSG00000165792|ENST00000339374|METTL17;nc|ENSG00000165792|Q9H7H0-3|METTL17 ENST00000555902.6_1_14:21458708-21463066:+|nuORF ENST00000555902.6_1_14:21458708-21463066:+|nuORF MSMS UPN48_class_I_Rep_1 5 622.3003540039062 2 622.275923 1242.53729 NaN NaN NaN NaN NaN NaN NaN 48.187 1 51.708 51.208 52.208 3.5219 0 0 0 0.53105 1 9604 9604 1.3295 0.36726 1 34070 4203 21717 21728 39037 39037 -0.07427387211009773 QSLYLHRYY 9 Unmodified _QSLYLHRYY_ 0 0 0 nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16 nc|ENSG00000291110|Q309B1|TRIM16L nc|ENSG00000291110|Q309B1|TRIM16L MSMS UPN47_class_I_Rep_2 3 621.8154907226562 2 621.81693 1241.61931 NaN NaN NaN NaN NaN NaN NaN 63.12 1 66.376 65.876 66.876 3.2558 0 0 0 0.38478 1 14954 14954 4.3292 0.38484 1 34071 5647 21718 21729 39038 39038 0.008162192546024016 QSNKIYEPY 9 Unmodified _QSNKIYEPY_ 0 0 0 REV__L1ME1_dup27795|chr17:64652777-64653472:+|1.3998782231308105|0.0087049036222802|7.33|151.0|22|3|sense REV__L1ME1_dup27795|chr17:64652777-64653472:+|1.3998782231308105|0.0087049036222802|7.33|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.7644653320312 2 571.279846 1140.54514 -0.18252 -0.00010427 0.39438 0.0002253 0.21187 0.00012104 571.2800896204051 30.121 0.7796 33.433 33.158 33.937 3.3116 141 63 3 0 0 0 0.48643 1 5090 5090 2.0598 0 1 141480 + 34072 27722 21719 21730 39039 39039 -0.019511686275791362 QSNSGNTENSC 11 Unmodified _QSNSGNTENSC_ 0 0 0 L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|22|1|sense;L1PA12_dup912|chr9:27073160-27075279:-|1.1146772451023463|0.321966809920392|1.79|151.0|29|2|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|22|1|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|22|1|sense MSMS UPN47_class_I_Rep_3 4 570.2911987304688 2 570.714741 1139.41493 NaN NaN NaN NaN NaN NaN NaN 45.916 1 49.16 48.66 49.66 3.2441 0 0 0 0.38417 1 9774 9774 0.96228 0.16864 1 34073 13724 21720 21731 39040 39040 -0.1492013268887149 QSNTYLVFSH 10 Unmodified _QSNTYLVFSH_ 0 0 0 L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|238|1|anti-sense L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|238|1|anti-sense L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|238|1|anti-sense MSMS UPN48_class_I_Rep_2 6 598.2908935546875 2 598.290745 1194.56694 NaN NaN NaN NaN NaN NaN NaN 38.565 1 42.281 41.781 42.781 3.7164 0 0 0 0.53105 1 6739 6739 2.9952 0.26005 1 34074 14640 21721 21732 39041 39041 -0.02256363878996126 QSPRRRRA 8 Unmodified _QSPRRRRA_ 0 0 0 REV__nc|ENSG00000172819|P13631-3|RARG REV__nc|ENSG00000172819|P13631-3|RARG MSMS UPN48_class_I_Rep_1 5 513.805419921875 2 513.805023 1025.59549 NaN NaN NaN NaN NaN NaN NaN 88.001 1 91.62 91.12 92.12 3.6187 0 0 0 0.40625 1 21102 21102 2.3027 0 1 + 34075 20459 21722 21733 39042 39042 0.08371843331474338 QSPTCSCVCPF 11 Unmodified _QSPTCSCVCPF_ 0 0 0 REV__L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|109|1|anti-sense REV__L1PREC2_dup5825|chr12:19571074-19574397:-|1.3711685836192098|0.2726106638004125|2.33|151.0|109|1|anti-sense MSMS UPN47_class_I_Rep_3 4 586.2335815429688 2 586.23267 1170.45079 NaN NaN NaN NaN NaN NaN NaN 66.242 1 69.427 68.927 69.927 3.1853 0 0 0 0.38417 1 15963 15963 2.9952 1.151 1 + 34076 30734 21723 21734 39043 39043 -0.1276209003722215 QSQAVLLSSVG 11 Unmodified _QSQAVLLSSVG_ 0 0 0 MLT1G_dup7|chr1:9683664-9684195:-|1.8289817343298456|0.0212123378372429|6.43|151.0|8|1|sense MLT1G_dup7|chr1:9683664-9684195:-|1.8289817343298456|0.0212123378372429|6.43|151.0|8|1|sense MLT1G_dup7|chr1:9683664-9684195:-|1.8289817343298456|0.0212123378372429|6.43|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 544.816162109375 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 13.108 1 13.108 12.608 13.608 0 0 0 0 0.38417 1 299 299 2.2828 0.43854 1 34077 16407 21724 21735 39044 39044 0.04704806780796389 QSQGLPSKKE 10 Unmodified _QSQGLPSKKE_ 0 0 0 REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF MSMS UPN48_class_I_Rep_1 5 551.31640625 2 551.29857 1100.58259 NaN NaN NaN NaN NaN NaN NaN 34.185 1 37.704 37.204 38.204 3.5194 0 0 0 0.53105 1 5435 5435 4.897 0 1 + 34078 17689 21725 21736 39045 39045 0.03631922638055585 QSQQKLAEF 9 Unmodified _QSQQKLAEF_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-SECPEP UPN47_class_I_Rep_2 3 539.2976684570312 2 539.780013 1077.54547 0.4711 0.00025429 -0.74784 -0.00040367 -0.27674 -0.00014938 539.7794988694305 55.525 0.61402 58.835 58.592 59.206 3.3102 43 34 2 0 0 0 0.1154 1 12705 12705 13.042 0 1 92490 + 34079 19876 21726 21737 39046 39046 0.009802510922554575 QSQQKLAEF 9 Unmodified _QSQQKLAEF_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MATCH UPN47_class_I_Rep_1 2 2 539.780013 1077.54547 0.35993 0.00019428 -0.81611 -0.00044052 -0.45618 -0.00024624 539.7797547039088 55.311 0.32119 58.79 58.581 58.902 3.4785 -0.024235 -0.00020219 NaN 13.042 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 61809 + 34080 19876 21726 21737 0.009802510922554575 QSQQKLAEF 9 Unmodified _QSQQKLAEF_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MATCH UPN47_class_I_Rep_3 4 2 539.780013 1077.54547 0.39577 0.00021363 -0.51587 -0.00027845 -0.1201 -6.4826E-05 539.7795207602222 55.639 0.50849 58.817 58.665 59.174 3.1779 0.0029537 0.00012195 NaN 13.042 47 33 2 NaN NaN NaN NaN 0 NaN NaN 0 72371 + 34081 19876 21726 21737 0.009802510922554575 QSQQVYLFF 9 Unmodified _QSQQVYLFF_ 0 0 0 L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|16|2|sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|16|2|sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.2927856445312 2 580.292756 1158.57096 0.54059 0.0003137 0.11247 6.5263E-05 0.65305 0.00037896 580.2928185534843 63.11 0.70647 66.572 66.193 66.899 3.4625 83 47 2 0 0 0 0.26948 1 14207 14207 15.847 1.0089 1 175450 34082 12315 21727 21738 39047 39047 -0.0019827438529773644 QSQQVYLFF 9 Unmodified _QSQQVYLFF_ 0 0 0 L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|16|2|sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|16|2|sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.2939453125 2 580.292756 1158.57096 0.50163 0.00029109 0.61662 0.00035782 1.1182 0.00064891 580.2932977106373 62.874 0.70782 66.383 65.959 66.667 3.5091 87 48 2 0 0 0 0.35081 2 14036 14036;14090 10.824 1.4408 1 207910 34083 12315 21727 21738 39048;39049 39048 -0.0019827438529773644 QSQWSKTD 8 Unmodified _QSQWSKTD_ 0 0 0 L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|39|2|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|39|2|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|39|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.22735595703125 2 490.227613 978.440674 -0.28878 -0.00014157 0.6464 0.00031688 0.35762 0.00017531 490.2278349629175 32.763 0.76808 36.476 36.173 36.941 3.7131 125 62 3 0 0 0 0.82752 1 5727 5727 13.906 1.6654 1 307480 34084 12661 21728 21739 39050 39050 -0.04940870384291429 QSRKLRRNG 9 Unmodified _QSRKLRRNG_ 0 0 0 L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|25|1|sense L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|25|1|sense L1PA15_dup130|chr1:83135799-83140153:-|3.922332850292783|0.1915568503831329|4.36|151.0|25|1|sense MSMS UPN46_class_I_Rep_3 1 557.8306884765625 2 557.831237 1113.64792 NaN NaN NaN NaN NaN NaN NaN 95.623 1 95.623 95.123 96.123 0 0 0 0 0.39518 1 23225 23225 1.8442 0 1 34085 13872 21729 21740 39051 39051 0.09564381674408651 QSRPPQMLF 9 Unmodified _QSRPPQMLF_ 0 0 0 ENSG00000278057|ENST00000617225|TEX28 ENSG00000278057|ENST00000617225|TEX28 ENSG00000278057|ENST00000617225|TEX28 MSMS UPN48_class_I_Rep_1 5 552.2849731445312 2 552.286951 1102.55935 NaN NaN NaN NaN NaN NaN NaN 62.346 1 65.809 65.309 66.309 3.4625 0 0 0 0.38639 1 13945 13945 3.9444 1.8846 1 34086 5836 21730 21741 39052 39052 0.012172053197218702 QSRPRMYSFI 10 Unmodified _QSRPRMYSFI_ 0 0 0 REV__ENSG00000244623|ENST00000316368|OR2AE1 REV__ENSG00000244623|ENST00000316368|OR2AE1 MSMS UPN48_class_I_Rep_1 5 642.8294677734375 2 642.829514 1283.64448 NaN NaN NaN NaN NaN NaN NaN 44.127 1 47.64 47.14 48.14 3.5132 0 0 0 0.53105 1 8363 8363 3.2813 0.28607 1 + 34087 21342 21731 21742 39053 39053 0.013999507855260163 QSRTITVTR 9 Unmodified _QSRTITVTR_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS UPN46_class_I_Rep_3 1 531.3065795898438 2 531.306729 1060.59891 NaN NaN NaN NaN NaN NaN NaN 21.573 1 21.573 21.073 22.073 0 0 0 0 0.36857 1 2431 2431 7.1017 1.8048 1 34088 2492 21732 21743 39054 39054 0.07103048594785832 QSRTITVTR 9 Unmodified _QSRTITVTR_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS UPN46_class_I_Rep_3 1 531.306884765625 2 531.306729 1060.59891 NaN NaN NaN NaN NaN NaN NaN 21.743 1 21.743 21.243 22.243 0 0 0 0 0.28608 1 2475 2475 11.495 1.4208 1 34089 2492 21732 21743 39055 39055 0.07103048594785832 QSRVREHYES 10 Unmodified _QSRVREHYES_ 0 0 0 REV__ENST00000463973.5_1_20:34206447-34206702:+|nuORF REV__ENST00000463973.5_1_20:34206447-34206702:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 645.3111572265625 2 645.812907 1289.61126 0.48968 0.00031624 -0.474 -0.00030611 0.015687 1.0131E-05 645.8128319674645 60.618 0.076881 63.999 63.957 64.033 3.3815 8 6 2 0 0 0 0.84575 1 14154 14154 3.2813 0 1 61949 + 34090 17726 21733 21744 39056 39056 -0.021959597328077507 QSSDLYRE 8 Unmodified _QSSDLYRE_ 0 0 0 ENST00000592414.1_1_19:3052943-3053030:-|nuORF ENST00000592414.1_1_19:3052943-3053030:-|nuORF ENST00000592414.1_1_19:3052943-3053030:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 499.23309326171875 2 499.232896 996.451239 -0.2604 -0.00013 0.33749 0.00016848 0.077084 3.8483E-05 499.232971444828 32.748 0.8866 36.461 36.097 36.984 3.7131 153 71 3 0 0 0 0.82752 1 5791 5791 3.5965 0 1 358460 34091 7629 21734 21745 39057 39057 -0.04712887729863269 QSSDLYRE 8 Unmodified _QSSDLYRE_ 0 0 0 ENST00000592414.1_1_19:3052943-3053030:-|nuORF ENST00000592414.1_1_19:3052943-3053030:-|nuORF ENST00000592414.1_1_19:3052943-3053030:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 499.233154296875 2 499.232896 996.451239 -0.3516 -0.00017553 0.39917 0.00019928 0.047567 2.3747E-05 499.2330197324123 33.144 0.95938 36.431 36.074 37.033 3.2867 173 73 3 0 0 0 0.82752 1 5982 5982 3.5965 0 1 310250 34092 7629 21734 21745 39058 39058 -0.04712887729863269 QSSLKLELG 9 Unmodified _QSSLKLELG_ 0 0 0 L1PA3_dup8408|chr12:26669558-26675709:+|1.8567229224142128|0.1009279372125444|4.2|151.0|88|2|sense L1PA3_dup8408|chr12:26669558-26675709:+|1.8567229224142128|0.1009279372125444|4.2|151.0|88|2|sense L1PA3_dup8408|chr12:26669558-26675709:+|1.8567229224142128|0.1009279372125444|4.2|151.0|88|2|sense MSMS UPN48_class_I_Rep_2 6 487.7927551269531 2 487.779482 973.544411 NaN NaN NaN NaN NaN NaN NaN 44.442 1 48.203 47.703 48.703 3.7617 0 0 0 0.38916 1 8470 8470 3.2813 0.28607 1 34093 14289 21735 21746 39059 39059 0.05658036723366422 QSTKVSACMRC 11 Unmodified _QSTKVSACMRC_ 0 0 0 L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|278|2|anti-sense L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|278|2|anti-sense L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|278|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 405.24139404296875 3 405.187721 1212.54133 0.14208 5.757E-05 4.1997 0.0017017 4.3418 0.0017592 405.52388451619294 75.96 0.06675 79.543 79.5 79.566 3.5831 11 7 2 0 0 0 22.551 1 17867 17867 1.0136 0 1 149580 34094 14796 21736 21747 39060 39060 -0.056436209889398015 QSWANSSFT 9 Unmodified _QSWANSSFT_ 0 0 0 REV__ENST00000597564.5_1_19:58740306-58741605:+|nuORF REV__ENST00000597564.5_1_19:58740306-58741605:+|nuORF MSMS UPN48_class_I_Rep_1 5 514.229736328125 2 514.227613 1026.44067 NaN NaN NaN NaN NaN NaN NaN 24.054 1 27.62 27.12 28.12 3.5655 0 0 0 0.3967 1 2596 2596 1.4819 0.68827 1 + 34095 23199 21737 21748 39061 39061 -0.07148870384276051 QSWTQLDF 8 Unmodified _QSWTQLDF_ 0 0 0 REV__L1ME4b_dup20475|chr20:2876223-2876808:-|1.1244863262125386|0.0359393672342891|4.97|151.0|30|1|anti-sense REV__L1ME4b_dup20475|chr20:2876223-2876808:-|1.1244863262125386|0.0359393672342891|4.97|151.0|30|1|anti-sense MSMS UPN46_class_I_Rep_3 1 512.7426147460938 2 512.740357 1023.46616 NaN NaN NaN NaN NaN NaN NaN 16.777 1 16.777 16.277 17.277 0 0 0 0 0.40659 1 1216 1216 1.8442 0 1 + 34096 28278 21738 21749 39062 39062 -0.044633958618419456 QSYECVCVLF 10 Unmodified _QSYECVCVLF_ 0 0 0 ENST00000557056.5_1_14:24787624-24791466:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4 ENST00000557056.5_1_14:24787624-24791466:-|nuORF ENST00000557056.5_1_14:24787624-24791466:-|nuORF MSMS UPN46_class_I_Rep_3 1 595.6397705078125 2 595.76466 1189.51477 NaN NaN NaN NaN NaN NaN NaN 65.908 1 65.908 65.408 66.408 0 0 0 0 0.53105 1 14924 14924 1.8442 0 1 34097 2620 21739 21750 39063 39063 -0.07240986608644562 QSYEIFTY 8 Unmodified _QSYEIFTY_ 0 0 0 LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 525.744140625 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 35.306 1 38.982 38.482 39.482 3.6762 0 0 0 0.40501 1 6459 6459 3.9444 0 1 34098 15660 21740 21751 39064 39064 -0.052179314389377396 QSYRYDFF 8 Unmodified _QSYRYDFF_ 0 0 0 REV__nc|ENSG00000106462|Q15910-5|EZH2 REV__nc|ENSG00000106462|Q15910-5|EZH2 MSMS UPN46_class_I_Rep_3 1 563.2528686523438 2 563.253631 1124.49271 NaN NaN NaN NaN NaN NaN NaN 35.085 1 35.085 34.585 35.585 0 0 0 0 0.40527 1 6345 6345 3.5965 0 1 + 34099 18327 21741 21752 39065 39065 -0.06455706970518804 QSYYQINVW 9 Unmodified _QSYYQINVW_ 0 0 0 REV__L1MA5_dup1506|chr5:122777701-122778502:-|1.1406133342313072|0.094362186861852|3.6|151.0|19|2|sense REV__L1MA5_dup1506|chr5:122777701-122778502:-|1.1406133342313072|0.094362186861852|3.6|151.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 600.7930908203125 2 600.787838 1199.56112 NaN NaN NaN NaN NaN NaN NaN 47 1 50.75 50.25 51.25 3.7494 0 0 0 0.38784 1 9249 9249 3.5965 0.31518 1 + 34100 25359 21742 21753 39066 39066 -0.030674623906861598 QTALPGNDRY 10 Unmodified _QTALPGNDRY_ 0 0 0 USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25 USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant MSMS UPN47_class_I_Rep_1 2 567.7797241210938 2 567.780544 1133.54654 NaN NaN NaN NaN NaN NaN NaN 31.828 1 35.557 35.057 36.057 3.7293 0 0 0 0.53105 1 5395 5395 1.3295 0.13619 1 34101 3700 21743 21754 39067 39067 -0.014895345388140413 QTALPGNDRY 10 Unmodified _QTALPGNDRY_ 0 0 0 USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25 USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant USP25|p.L966Ffs*8|1|0.16|ENSG00000155313|chr21:15877888-15877889|-/T|frameshift_variant MSMS UPN47_class_I_Rep_2 3 567.7800903320312 2 567.780544 1133.54654 NaN NaN NaN NaN NaN NaN NaN 32.191 1 35.646 35.146 36.146 3.4547 0 0 0 0.53105 1 5545 5545 2.4985 0.19575 1 34102 3700 21743 21754 39068 39068 -0.014895345388140413 QTAPLVPMHW 10 Unmodified _QTAPLVPMHW_ 0 0 0 REV__AluSx_dup53294|chr9:15473626-15473955:+|1.068467950416797|0.1561338343474443|2.77|151.0|9|3|sense REV__AluSx_dup53294|chr9:15473626-15473955:+|1.068467950416797|0.1561338343474443|2.77|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 590.3051147460938 2 590.302601 1178.59065 NaN NaN NaN NaN NaN NaN NaN 43.81 1 47.449 46.949 47.949 3.6385 0 0 0 0.53105 1 8198 8198 1.4819 0 1 + 34103 17144 21744 21755 39069 39069 0.008497783538132353 QTAWYWHQ 8 Unmodified _QTAWYWHQ_ 0 0 0 L1PA6_dup5324|chr16:21329024-21335176:-|1.6476788366102642|0.0586656278025271|4.81|150.0|110|2|sense L1PA6_dup5324|chr16:21329024-21335176:-|1.6476788366102642|0.0586656278025271|4.81|150.0|110|2|sense L1PA6_dup5324|chr16:21329024-21335176:-|1.6476788366102642|0.0586656278025271|4.81|150.0|110|2|sense MSMS UPN48_class_I_Rep_3 7 560.2546997070312 2 560.253966 1118.49338 NaN NaN NaN NaN NaN NaN NaN 34.91 1 38.582 38.082 39.082 3.6721 0 0 0 0.40625 1 5598 5598 2.3027 0.24298 1 34104 14662 21745 21756 39070 39070 -0.061128675308282254 QTCEASQSN 9 Unmodified _QTCEASQSN_ 0 0 0 REV__nc|ENSG00000132849|Q8NI35-5|PATJ REV__nc|ENSG00000132849|Q8NI35-5|PATJ MSMS UPN47_class_I_Rep_3 4 484.2032165527344 2 484.192913 966.371274 NaN NaN NaN NaN NaN NaN NaN 34.797 1 38.061 37.561 38.561 3.2639 0 0 0 0.39518 1 6369 6369 1.8442 1.0506 1 + 34105 31981 21746 21757 39071 39071 -0.11325697395352563 QTDFFQSVY 9 Unmodified _QTDFFQSVY_ 0 0 0 L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|106|3|anti-sense L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|106|3|anti-sense L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|106|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.7593994140625 2 567.758746 1133.50294 0.42357 0.00024049 0.01873 1.0634E-05 0.4423 0.00025112 567.75872834427 72.055 0.44788 72.055 71.859 72.307 0 69 41 2 0 0 0 0.16559 3 16647 16613;16647;16688 24.021 5.8856 1 251590 34106 11206 21747 21758 39072;39073;39074 39073 -0.0584714403594262 QTDFFQSVY 9 Unmodified _QTDFFQSVY_ 0 0 0 L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|106|3|anti-sense L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|106|3|anti-sense L1MC1_dup9132|chr11:46448184-46449778:+|1.155718148865743|0.0184072759462969|5.97|151.0|106|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 567.758746 1133.50294 0.42357 0.00024049 0.01873 1.0634E-05 0.4423 0.00025112 567.75872834427 72.055 0.44788 72.055 71.859 72.307 0 0 0 NaN 24.021 69 41 2 NaN NaN NaN NaN 0 NaN NaN 0 251590 34107 11206 21747 21758 -0.0584714403594262 QTDHLFFKY 9 Unmodified _QTDHLFFKY_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10 ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 599.7991943359375 2 599.798206 1197.58186 0.35312 0.0002118 0.19874 0.0001192 0.55186 0.000331 600.2998861843033 48.221 0.30766 51.57 51.448 51.756 3.3492 18 14 2 0 0 0 0.41259 1 10394 10394 7.2892 0.56607 1 44677 34108 3049 21748 21759 39075 39075 -0.00902872010988176 QTDIQGALSAY 11 Unmodified _QTDIQGALSAY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS UPN47_class_I_Rep_1 2 583.7879028320312 2 583.788035 1165.56152 0.38581 0.00022523 -0.40206 -0.00023472 -0.016252 -9.4879E-06 583.7878026744751 58.204 0.63102 61.641 61.307 61.938 3.437 70 40 2 0 0 0 0.30549 3 13417 13378;13417;13456 34.222 14.86 1 192700 34109 5451 21749 21760 39076;39077;39078 39077 -0.014640874614769928 QTDIQGALSAY 11 Unmodified _QTDIQGALSAY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS UPN47_class_I_Rep_2 3 583.78759765625 2 583.788035 1165.56152 0.51953 0.0003033 -0.4319 -0.00025214 0.087625 5.1155E-05 583.7877587411388 58.403 0.60285 61.684 61.395 61.998 3.2818 53 33 2 0 0 0 0.2652 3 13530 13485;13530;13557 24.882 10.476 1 143140 34110 5451 21749 21760 39079;39080;39081 39080 -0.014640874614769928 QTDIQGALSAY 11 Unmodified _QTDIQGALSAY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS UPN47_class_I_Rep_3 4 583.7869873046875 2 583.788035 1165.56152 0.34052 0.00019879 -0.36221 -0.00021145 -0.021691 -1.2663E-05 583.7878463630832 58.44 0.55544 61.606 61.386 61.942 3.1658 60 34 2 0 0 0 0.29552 4 13593 13556;13593;13598;13640 34.222 14.86 1 163530 34111 5451 21749 21760 39082;39083;39084;39085 39083 -0.014640874614769928 QTDKLKELY 9 Unmodified _QTDKLKELY_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_1 2 569.3112182617188 2 569.311146 1136.60774 -0.068684 -3.9103E-05 0.63354 0.00036068 0.56486 0.00032158 569.3115130270448 32.195 0.77121 35.908 35.6 36.371 3.7131 135 65 3 0 0 0 0.17897 3 5538 5458;5499;5538 22.736 2.3939 1 232890 34112 4690 21750 21761 39086;39087;39088 39088 0.04489977440630355 QTDKLKELY 9 Unmodified _QTDKLKELY_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_2 3 569.3112182617188 2 569.311146 1136.60774 0.046097 2.6243E-05 0.58261 0.00033168 0.6287 0.00035793 569.3114146754417 32.431 0.68819 35.886 35.626 36.314 3.4547 110 49 3 0 0 0 0.37599 1 5600 5600 9.3831 1.473 1 184290 34113 4690 21750 21761 39089 39089 0.04489977440630355 QTDNIIYVY 9 Unmodified _QTDNIIYVY_ 0 0 0 ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 565.2823486328125 2 564.782222 1127.54989 0.36982 0.00020887 -0.41176 -0.00023255 -0.041935 -2.3684E-05 564.7818562398027 63.946 0.47028 67.302 67.098 67.569 3.3557 63 37 2 0 0 0 0.21527 3 15169 15135;15169;15220 19.257 1.1106 1 150320 34114 3057 21751 21762 39090;39091;39092 39091 -0.008782844847928573 QTDNIIYVY 9 Unmodified _QTDNIIYVY_ 0 0 0 ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 564.7824096679688 2 564.782222 1127.54989 0.4003 0.00022608 -0.29013 -0.00016386 0.11017 6.2223E-05 564.781908724723 64.202 0.65725 67.457 67.16 67.817 3.2556 79 51 2 0 0 0 0.24936 3 15287 15247;15287;15314 17.113 0.96379 1 114250 34115 3057 21751 21762 39093;39094;39095 39094 -0.008782844847928573 QTDNIIYVY 9 Unmodified _QTDNIIYVY_ 0 0 0 ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 564.7822265625 2 564.782222 1127.54989 0.43104 0.00024344 -0.33309 -0.00018813 0.097943 5.5317E-05 564.7818555637123 64.302 0.49258 67.476 67.166 67.658 3.1741 57 33 2 0 0 0 0.24936 5 15348 15292;15307;15348;15390;15395 17.113 0.96379 1 112490 34116 3057 21751 21762 39096;39097;39098;39099;39100 39098 -0.008782844847928573 QTDNIIYVY 9 Unmodified _QTDNIIYVY_ 0 0 0 ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF ENST00000507184.5_1_2:27680991-27709067:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 564.782222 1127.54989 0.4003 0.00022608 -0.29013 -0.00016386 0.11017 6.2223E-05 564.781908724723 64.202 0.65725 67.457 67.16 67.817 3.2556 0.04569 5.4537E-05 NaN 17.113 79 51 2 NaN NaN NaN NaN 0 NaN NaN 0 114250 34117 3057 21751 21762 -0.008782844847928573 QTEDNMLFY 9 Oxidation (M) _QTEDNM(Oxidation (M))LFY_ QTEDNM(1)LFY QTEDNM(44)LFY 0 0 1 ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS UPN47_class_I_Rep_1 2 588.7479858398438 2 588.747521 1175.48049 0.34361 0.0002023 0.4984 0.00029343 0.84201 0.00049573 588.7478159174908 55.05 0.78698 58.551 58.247 59.034 3.5014 112 48 3 0 0 0 0.061943 2 12460 12460;12503 43.858 14.777 1 227530 34118 3219 21752 21763 39101;39102 39101 100 -0.1002311149588877 QTEIQTNR 8 Unmodified _QTEIQTNR_ 0 0 0 L1PA6_dup334|chr1:176086597-176088264:+|1.4140934931500997|0.0237688666981265|5.89|151.0|40|3|sense L1PA6_dup334|chr1:176086597-176088264:+|1.4140934931500997|0.0237688666981265|5.89|151.0|40|3|sense L1PA6_dup334|chr1:176086597-176088264:+|1.4140934931500997|0.0237688666981265|5.89|151.0|40|3|sense MSMS UPN48_class_I_Rep_2 6 495.25469970703125 2 495.254163 988.493772 NaN NaN NaN NaN NaN NaN NaN 18.985 1 22.636 22.136 23.136 3.6509 0 0 0 0.40659 1 1366 1366 1.8442 0 1 34119 14609 21753 21764 39103 39103 -0.0009349260162707651 QTEKYKYTY 9 Unmodified _QTEKYKYTY_ 0 0 0 ENST00000225729.7_1_17:18010580-18010793:+|nuORF ENST00000225729.7_1_17:18010580-18010793:+|nuORF ENST00000225729.7_1_17:18010580-18010793:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 612.3012084960938 2 612.300778 1222.587 0.54395 0.00033306 -0.099963 -6.1208E-05 0.44399 0.00027186 612.3006442715769 58.344 0.20244 61.831 61.752 61.955 3.487 16 11 3 0 0 0 0.47493 1 12724 12724 3.2813 0 1 292150 34120 5876 21754 21765 39104 39104 -0.015386129390662973 QTEPLWGV 8 Unmodified _QTEPLWGV_ 0 0 0 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MSMS UPN48_class_I_Rep_1 5 465.2399597167969 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 75.102 1 78.592 78.092 79.092 3.49 0 0 0 0.4032 1 17777 17777 6.3541 1.1234 1 + 34121 20063 21755 21766 39105 39105 -0.0016619051090174253 QTEQLQSR 8 Unmodified _QTEQLQSR_ 0 0 0 REV__ENST00000575193.1_1_2:89102295-89104913:+|nuORF REV__ENST00000575193.1_1_2:89102295-89104913:+|nuORF MSMS UPN48_class_I_Rep_1 5 495.2540283203125 2 495.254163 988.493772 NaN NaN NaN NaN NaN NaN NaN 19.574 1 23.111 22.611 23.611 3.5378 0 0 0 0.40367 1 1508 1508 5.7319 0 1 + 34122 23104 21756 21767 39106 39106 -0.0009349260161570783 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF nc|ENSG00000079819|O43491-3|EPB41L2 nc|ENSG00000079819|O43491-3|EPB41L2 MULTI-MSMS UPN47_class_I_Rep_1 2 542.779541015625 2 542.779679 1083.5448 -0.038762 -2.1039E-05 -0.13181 -7.1544E-05 -0.17057 -9.2583E-05 542.7796973597458 27.485 0.52516 31.252 30.981 31.506 3.7662 82 40 3 0 0 0 0.26468 1 4077 4077 16.149 3.1066 1 118210 34123 1194 21757 21768 39107 39107 0.0063741165256487875 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF nc|ENSG00000079819|O43491-3|EPB41L2 nc|ENSG00000079819|O43491-3|EPB41L2 MULTI-MSMS UPN47_class_I_Rep_2 3 542.7788696289062 2 542.779679 1083.5448 0.0091467 4.9647E-06 -0.1326 -7.1973E-05 -0.12345 -6.7008E-05 542.7796771039809 27.627 0.55355 31.126 30.859 31.412 3.4986 71 42 2 0 0 0 0.19147 2 4154 4154;4190 21.537 3.3906 1 98954 34124 1194 21757 21768 39108;39109 39108 0.0063741165256487875 QTETKTITY 9 Unmodified _QTETKTITY_ 0 0 0 nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF nc|ENSG00000079819|O43491-3|EPB41L2 nc|ENSG00000079819|O43491-3|EPB41L2 MULTI-MSMS UPN47_class_I_Rep_3 4 542.7796630859375 2 542.779679 1083.5448 -0.23514 -0.00012763 0.1053 5.7153E-05 -0.12984 -7.0474E-05 542.7796531603194 27.681 0.63971 31.024 30.816 31.455 3.3422 87 52 2 0 0 0 0.43153 1 4285 4285 6.2058 6.2058 1 88453 34125 1194 21757 21768 39110 39110 0.0063741165256487875 QTFFLQKKK 9 Unmodified _QTFFLQKKK_ 0 0 0 nc|ENSG00000169946|Q8WW38-2|ZFPM2 nc|ENSG00000169946|Q8WW38-2|ZFPM2 nc|ENSG00000169946|Q8WW38-2|ZFPM2 MSMS UPN46_class_I_Rep_3 1 584.3475952148438 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 90.002 1 90.002 89.502 90.502 0 0 0 0 0.4007 1 21683 21683 0.52476 0 1 34126 16746 21758 21769 39111 39111 0.10450570673742732 QTFLEHWLGA 10 Unmodified _QTFLEHWLGA_ 0 0 0 L1ME1_dup26610|chr16:29203286-29204056:-|1.239808902159934|0.0779932877284963|3.99|150.0|6|2|sense L1ME1_dup26610|chr16:29203286-29204056:-|1.239808902159934|0.0779932877284963|3.99|150.0|6|2|sense L1ME1_dup26610|chr16:29203286-29204056:-|1.239808902159934|0.0779932877284963|3.99|150.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 601.3029174804688 2 601.303655 1200.59276 NaN NaN NaN NaN NaN NaN NaN 77.824 1 81.346 80.846 81.846 3.5221 0 0 0 0.53105 1 18540 18540 1.6526 0 1 34127 12345 21759 21770 39112 39112 0.00048530363278587174 QTFWYVVF 8 Unmodified _QTFWYVVF_ 0 0 0 L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|337|3|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|337|3|anti-sense L1PA5_dup8566|chr12:370613-376718:-|8.49358715228904|0.2841123836843429|4.9|151.0|337|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.31689453125 2 545.273835 1088.53312 0.46146 0.00025162 -2.5936 -0.0014142 -2.1321 -0.0011626 545.7741392107904 81.87 0.052765 85.193 85.173 85.225 3.3231 6 5 2 0 0 0 0.72333 1 20507 20507 2.8892 0 1 26240 34128 14518 21760 21771 39113 39113 -0.007607405801081768 QTHWGGPV 8 Unmodified _QTHWGGPV_ 0 0 0 REV__MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|7|1|sense REV__MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 441.2174072265625 2 441.216852 880.419151 NaN NaN NaN NaN NaN NaN NaN 82.573 1 82.573 82.073 83.073 0 0 0 0 0.40738 1 19567 19567 0.79363 0 1 + 34129 31233 21761 21772 39114 39114 -0.025842106223194605 QTIGYQIRL 9 Unmodified _QTIGYQIRL_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MSMS UPN48_class_I_Rep_1 5 546.3138427734375 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 55.226 1 58.734 58.234 59.234 3.5082 0 0 0 0.37891 1 11767 11767 5.7319 1.203 1 34130 882 21762 21773 39115 39115 0.07181120742939129 QTIGYQIRL 9 Unmodified _QTIGYQIRL_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MSMS UPN48_class_I_Rep_3 7 546.313720703125 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 55.274 1 58.829 58.329 59.329 3.5554 0 0 0 0.25702 1 11701 11701 13.042 4.2971 1 34131 882 21762 21773 39116 39116 0.07181120742939129 QTINSCVQYT 10 Unmodified _QTINSCVQYT_ 0 0 0 L1M4a1_dup1596|chr10:5778879-5779229:+|1.0275787602778554|0.0822024704169718|3.64|149.0|4|2|sense L1M4a1_dup1596|chr10:5778879-5779229:+|1.0275787602778554|0.0822024704169718|3.64|149.0|4|2|sense L1M4a1_dup1596|chr10:5778879-5779229:+|1.0275787602778554|0.0822024704169718|3.64|149.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 578.7720336914062 2 578.768788 1155.52302 NaN NaN NaN NaN NaN NaN NaN 51.26 1 51.26 50.76 51.76 0 0 0 0 0.53105 1 10883 10883 5.2969 0.76802 1 34132 8940 21763 21774 39117 39117 -0.04851716367647896 QTIVLGLYL 9 Unmodified _QTIVLGLYL_ 0 0 0 REV__L1MB1_dup5072|chr14:93319343-93319820:+|1.2435756928285653|0.0193251414071056|6.01|151.0|3|1|sense REV__L1MB1_dup5072|chr14:93319343-93319820:+|1.2435756928285653|0.0193251414071056|6.01|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.2749938964844 2 510.310418 1018.60628 0.098478 5.0254E-05 0.25839 0.00013186 0.35687 0.00018211 510.3103556409636 70.13 0.6005 73.413 73.091 73.692 3.2828 82 53 3 0 0 0 0.46434 1 16975 16975 4.3292 0.38484 1 149810 + 34133 25677 21764 21775 39118 39118 0.09772388142516775 QTKAGRIEE 9 Unmodified _QTKAGRIEE_ 0 0 0 REV__ENST00000553685.1_1_14:24036229-24036984:-|nuORF REV__ENST00000553685.1_1_14:24036229-24036984:-|nuORF MSMS UPN46_class_I_Rep_3 1 516.27587890625 2 516.277638 1030.54072 NaN NaN NaN NaN NaN NaN NaN 73.389 1 73.389 72.889 73.889 0 0 0 0 0.3967 1 17008 17008 1.4819 0 1 + 34134 17246 21765 21776 39119 39119 0.026673669495039576 QTKFKASR 8 Unmodified _QTKFKASR_ 0 0 0 L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|22|1|sense L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|22|1|sense L1PB2_dup1640|chrX:79292965-79295897:+|2.139280697602223|0.0067809277408172|8.3|151.0|22|1|sense MSMS UPN47_class_I_Rep_1 2 483.6463317871094 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 83.204 1 86.743 86.243 87.243 3.5386 0 0 0 0.40625 1 20803 20803 2.3027 0 1 34135 15227 21766 21777 39120 39120 0.06172295882936396 QTKIKKSI 8 Unmodified _QTKIKKSI_ 0 0 0 REV__nc|ENSG00000177694|Q58DX5-2|NAALADL2 REV__nc|ENSG00000177694|Q58DX5-2|NAALADL2 MULTI-MSMS UPN47_class_I_Rep_1 2 473.3077087402344 2 473.30821 944.601866 -0.39195 -0.00018551 -0.57092 -0.00027022 -0.96286 -0.00045573 473.3079988174318 14.714 0.36684 18.189 18.053 18.42 3.475 90 39 3 0 0 0 0.82752 1 648 648 13.042 0 1 182400 + 34136 20630 21767 21778 39121 39121 0.1273492371959719 QTKIKKSI 8 Unmodified _QTKIKKSI_ 0 0 0 REV__nc|ENSG00000177694|Q58DX5-2|NAALADL2 REV__nc|ENSG00000177694|Q58DX5-2|NAALADL2 MULTI-MSMS UPN47_class_I_Rep_2 3 473.3075866699219 2 473.30821 944.601866 -0.29675 -0.00014046 -0.723 -0.0003422 -1.0197 -0.00048266 473.3079268179388 14.773 0.3853 18.161 18.055 18.44 3.3871 100 44 3 0 0 0 0.82752 1 665 665 8.1555 0 1 131040 + 34137 20630 21767 21778 39122 39122 0.1273492371959719 QTKITQIII 9 Unmodified _QTKITQIII_ 0 0 0 ENST00000295087.12_1_2:152659229-152659286:-|nuORF ENST00000295087.12_1_2:152659229-152659286:-|nuORF ENST00000295087.12_1_2:152659229-152659286:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 529.3346557617188 2 529.334424 1056.6543 0.33949 0.0001797 0.0082745 4.38E-06 0.34776 0.00018408 529.3343299640475 53.337 0.73652 56.921 56.519 57.256 3.5836 93 51 2 0 0 0 0.32682 1 11090 11090 12.241 0 1 292910 34138 6051 21768 21779 39123 39123 0.12823462062578983 QTKKKSRLYL 10 Unmodified _QTKKKSRLYL_ 0 0 0 L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|139|3|sense L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|139|3|sense L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|139|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 632.3618774414062 2 632.890429 1263.76631 0.51336 0.0003249 3.0701 0.0019431 3.5835 0.002268 633.3937700979557 98.754 0.020798 102.19 102.17 102.19 3.4328 4 2 2 0 0 0 0.84575 1 24450 24450 1.4819 0 1 93526 34139 15210 21769 21780 39124 39124 0.14497316139568284 QTKKRMAK 8 Unmodified _QTKKRMAK_ 0 0 0 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 MSMS UPN47_class_I_Rep_3 4 495.79644775390625 2 495.797486 989.580419 NaN NaN NaN NaN NaN NaN NaN 73.769 1 77.005 76.505 77.505 3.2363 0 0 0 0.4044 1 18236 18236 4.756 0.81161 1 34140 5068 21770 21781 39125 39125 0.0852121541923907 QTKNLIGIY 9 Unmodified _QTKNLIGIY_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS UPN47_class_I_Rep_2 3 525.3027954101562 2 525.303124 1048.5917 0.16761 8.8045E-05 -0.2447 -0.00012854 -0.077087 -4.0494E-05 525.3029092504713 57.624 1.1943 60.915 60.456 61.65 3.2912 177 92 3 0 0 0 0.32682 1 13345 13345 12.241 0 1 365140 34141 4401 21771 21782 39126 39126 0.06934315994362805 QTKQRRGRPR 10 Unmodified _QTKQRRGRPR_ 0 0 0 REV__nc|ENSG00000168961|O00182-6|LGALS9 REV__nc|ENSG00000168961|O00182-6|LGALS9 MSMS UPN47_class_I_Rep_3 4 641.8827514648438 2 641.881793 1281.74903 NaN NaN NaN NaN NaN NaN NaN 88.447 1 91.834 91.334 92.334 3.3873 0 0 0 0.53105 1 22183 22183 3.2813 0 1 + 34142 32052 21772 21783 39127 39127 0.11942833377111128 QTKWDMFM 8 Unmodified _QTKWDMFM_ 0 0 0 REV__L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|28|3|sense REV__L1ME2_dup2891|chr3:121649905-121650855:+|2.3739914690741504|0.1598019364467066|3.89|151.0|28|3|sense MSMS UPN48_class_I_Rep_1 5 543.742919921875 2 543.740988 1085.46742 NaN NaN NaN NaN NaN NaN NaN 25.979 1 29.546 29.046 30.046 3.5667 0 0 0 0.40625 1 3113 3113 2.3027 0.82083 1 + 34143 27853 21773 21784 39128 39128 -0.07189221088970044 QTLAPIGWV 9 Unmodified _QTLAPIGWV_ 0 0 0 REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense REV__HERVE-int_dup194|chr11:71908491-71912322:+|5.563109066539941|0.2114694983791473|4.72|151.0|63|2|sense MSMS UPN48_class_I_Rep_1 5 492.7821044921875 2 492.779285 983.544017 NaN NaN NaN NaN NaN NaN NaN 35.485 1 38.995 38.495 39.495 3.5101 0 0 0 0.39326 1 5810 5810 2.3027 0.24298 1 + 34144 23642 21774 21785 39129 39129 0.051586617941893564 QTLGVLNLY 9 Unmodified _QTLGVLNLY_ 0 0 0 REV__MLT2C1_dup1150|chr7:92869157-92869569:+|1.8774229620927207|0.0007074052665179|11.37|151.0|12|3|sense REV__MLT2C1_dup1150|chr7:92869157-92869569:+|1.8774229620927207|0.0007074052665179|11.37|151.0|12|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7903137207031 2 510.78985 1019.56515 -0.26756 -0.00013667 0.22353 0.00011418 -0.044026 -2.2488E-05 510.7899098858691 36.378 0.90626 39.79 39.456 40.363 3.4114 122 67 2 0 0 0 0.49026 1 6912 6912 1.6526 0.17072 1 140340 + 34145 31830 21775 21786 39130 39130 0.05614627103034309 QTLHDLTY 8 Unmodified _QTLHDLTY_ 0 0 0 L1MA9_dup14331|chr16:29204194-29204963:-|1.110190684992637|0.0452252028436004|4.62|151.0|4|1|sense L1MA9_dup14331|chr16:29204194-29204963:-|1.110190684992637|0.0452252028436004|4.62|151.0|4|1|sense L1MA9_dup14331|chr16:29204194-29204963:-|1.110190684992637|0.0452252028436004|4.62|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.7463073730469 2 495.748182 989.481811 0.27868 0.00013815 -0.064613 -3.2032E-05 0.21406 0.00010612 495.7481505792594 44.729 0.65108 44.729 44.556 45.207 0 91 64 2 0 0 0 0.82752 1 9130 9130 20.454 0 1 644050 34146 10113 21776 21787 39131 39131 -0.01335109344825014 QTLKKHNHQT 10 Unmodified _QTLKKHNHQT_ 0 0 0 HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|42|2|sense HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|42|2|sense HERVP71A-int_dup125|chr10:48330955-48333651:-|2.746775179475142|0.1270451660070488|4.43|151.0|42|2|sense MSMS UPN46_class_I_Rep_3 1 617.8367309570312 2 617.836185 1233.65782 NaN NaN NaN NaN NaN NaN NaN 49.575 1 49.575 49.075 50.075 0 0 0 0 0.53105 1 10416 10416 1.4819 0 1 34147 8406 21777 21788 39132 39132 0.05033524889131513 QTLLFSATF 9 Unmodified _QTLLFSATF_ 0 0 0 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42;ENST00000581477.1_1_17:61887859-61888617:+|nuORF ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MSMS UPN48_class_I_Rep_1 5 514.2767333984375 2 514.276575 1026.5386 NaN NaN NaN NaN NaN NaN NaN 81.216 1 84.778 84.278 85.278 3.5624 0 0 0 0.050874 1 19360 19360 36.506 8.8774 1 34148 5422 21778 21789 39133 39133 0.026389382116803972 QTLLLLLLLLL 11 Unmodified _QTLLLLLLLLL_ 0 0 0 REV__ENSG00000125810|ENST00000246006|CD93 REV__ENSG00000125810|ENST00000246006|CD93 MSMS UPN48_class_I_Rep_1 5 633.445556640625 2 633.443975 1264.8734 NaN NaN NaN NaN NaN NaN NaN 60.477 1 63.951 63.451 64.451 3.4737 0 0 0 0.38417 1 13381 13381 0 0 1 + 34149 18841 21779 21790 39134 39134 0.25155473301242637 QTLRFLGLY 9 Unmodified _QTLRFLGLY_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 556.3208618164062 2 555.818941 1109.62333 0.52908 0.00029407 -0.27278 -0.00015161 0.2563 0.00014246 555.8186498589265 69.119 0.40325 72.574 72.364 72.767 3.4548 50 29 2 0 0 0 0.035561 3 16013 15986;16013;16038 54.774 10.915 1 161130 34150 1346 21780 21791 39135;39136;39137 39136 0.0729030874831551 QTLRFLGLY 9 Unmodified _QTLRFLGLY_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 555.8187866210938 2 555.818941 1109.62333 0.49908 0.0002774 -0.60446 -0.00033597 -0.10538 -5.857E-05 555.8184025207586 68.968 0.4317 72.489 72.233 72.664 3.5216 47 27 2 0 0 0 0.056917 2 15950 15908;15950 46.021 9.8939 1 120730 34151 1346 21780 21791 39138;39139 39139 0.0729030874831551 QTLRFLGLY 9 Unmodified _QTLRFLGLY_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MSMS UPN48_class_I_Rep_3 7 555.8179321289062 2 555.818941 1109.62333 NaN NaN NaN NaN NaN NaN NaN 68.748 1 72.257 71.757 72.757 3.5094 0 0 0 0.096434 1 15784 15784 25.399 2.663 1 34152 1346 21780 21791 39140 39140 0.0729030874831551 QTLRFLGLY 9 Unmodified _QTLRFLGLY_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MSMS UPN48_class_I_Rep_3 7 555.8192138671875 2 555.818941 1109.62333 NaN NaN NaN NaN NaN NaN NaN 68.879 1 72.388 71.888 72.888 3.5094 0 0 0 0.089203 1 15825 15825 26.884 7.6267 1 34153 1346 21780 21791 39141 39141 0.0729030874831551 QTLRFLGLY 9 Unmodified _QTLRFLGLY_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MSMS UPN48_class_I_Rep_3 7 555.8185424804688 2 555.818941 1109.62333 NaN NaN NaN NaN NaN NaN NaN 69.047 1 72.556 72.056 73.056 3.5094 0 0 0 0.015779 1 15876 15876 54.774 10.915 1 34154 1346 21780 21791 39142 39142 0.0729030874831551 QTNPKISTR 9 Unmodified _QTNPKISTR_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|76|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|76|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|76|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 522.7932739257812 2 522.793455 1043.57236 0.10438 5.4568E-05 -0.43704 -0.00022848 -0.33266 -0.00017391 522.7931784460432 31.651 0.75884 31.651 31.338 32.096 0 113 54 3 0 0 0 0.15547 1 5342 5342 24.991 0 1 362250 34155 12978 21781 21792 39143 39143 0.05231359703452654 QTPADLQHR 9 Unmodified _QTPADLQHR_ 0 0 0 L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|9|1|sense;L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|2|1|sense;L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|13|1|sense L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|9|1|sense L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|9|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 533.7635498046875 2 533.275429 1064.53631 0.13288 7.0862E-05 0.35458 0.00018909 0.48746 0.00025995 533.2753552577451 32.525 0.34144 32.525 32.349 32.691 0 28 24 2 0 0 0 0.43153 1 5559 5559 6.2058 1.4498 1 54533 34156 14287 21782 21793 39144 39144 0.0066190252659907856 QTPEDEMSQ 9 Unmodified _QTPEDEMSQ_ 0 0 0 REV__nc|ENSG00000137337|Q14676-3|MDC1 REV__nc|ENSG00000137337|Q14676-3|MDC1 MSMS UPN47_class_I_Rep_1 2 532.7137451171875 2 532.713679 1063.4128 NaN NaN NaN NaN NaN NaN NaN 80.31 1 83.775 83.275 84.275 3.465 0 0 0 0.39036 1 20011 20011 2.9952 0 1 + 34157 19227 21783 21794 39145 39145 -0.11636561426689696 QTPEDEMSQ 9 Unmodified _QTPEDEMSQ_ 0 0 0 REV__nc|ENSG00000137337|Q14676-3|MDC1 REV__nc|ENSG00000137337|Q14676-3|MDC1 MSMS UPN47_class_I_Rep_1 2 532.3189697265625 2 532.713679 1063.4128 NaN NaN NaN NaN NaN NaN NaN 80.371 1 83.836 83.336 84.336 3.465 0 0 0 0.39036 1 20026 20026 2.9952 0 1 + 34158 19227 21783 21794 39146 39146 -0.11636561426689696 QTPKFHIL 8 Unmodified _QTPKFHIL_ 0 0 0 nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8 nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8 nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8 MSMS UPN47_class_I_Rep_3 4 492.28778076171875 2 492.287277 982.560001 NaN NaN NaN NaN NaN NaN NaN 71.329 1 74.548 74.048 75.048 3.2188 0 0 0 0.40292 1 17495 17495 6.7232 0 1 34159 16840 21784 21795 39147 39147 0.06802368031083006 QTPTYHEELY 10 Unmodified _QTPTYHEELY_ 0 0 0 REV__L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|108|3|sense REV__L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|108|3|sense MSMS UPN47_class_I_Rep_3 4 640.7923583984375 2 640.793318 1279.57208 NaN NaN NaN NaN NaN NaN NaN 75.958 1 79.215 78.715 79.715 3.2573 0 0 0 0.53105 1 18869 18869 3.9444 0 1 + 34160 29853 21785 21796 39148 39148 -0.05652104807040814 QTQHNIYYPV 10 Unmodified _QTQHNIYYPV_ 0 0 0 REV__nc|ENSG00000152818|P46939-2|UTRN REV__nc|ENSG00000152818|P46939-2|UTRN MSMS UPN47_class_I_Rep_1 2 632.0626220703125 2 631.811845 1261.60914 NaN NaN NaN NaN NaN NaN NaN 36.999 1 40.668 40.168 41.168 3.6692 0 0 0 0.53105 1 6972 6972 1.3295 0.25807 1 + 34161 19694 21786 21797 39149 39149 -0.011203884706446843 QTQPDVMK 8 Unmodified _QTQPDVMK_ 0 0 0 REV__LTR47A_dup550|chr16:14665388-14665823:-|1.1152714566669997|0.2514587522992865|2.15|151.0|25|2|anti-sense REV__LTR47A_dup550|chr16:14665388-14665823:-|1.1152714566669997|0.2514587522992865|2.15|151.0|25|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 473.7369079589844 2 473.73676 945.458967 0.20961 9.93E-05 1.2735 0.00060331 1.4831 0.00070261 473.7370996482437 105.71 0.042671 109.41 109.4 109.44 3.702 7 5 2 0 0 0 0.82752 1 24945 24945 7.9102 0 1 69860 + 34162 30932 21787 21798 39150 39150 -0.015944517339335107 QTQPDVMK 8 Unmodified _QTQPDVMK_ 0 0 0 REV__LTR47A_dup550|chr16:14665388-14665823:-|1.1152714566669997|0.2514587522992865|2.15|151.0|25|2|anti-sense REV__LTR47A_dup550|chr16:14665388-14665823:-|1.1152714566669997|0.2514587522992865|2.15|151.0|25|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 473.73676 945.458967 0.23178 0.0001098 0.67052 0.00031765 0.9023 0.00042745 473.73719478347107 105.97 0.0233 109.68 109.67 109.69 3.7088 0.13427 -0.00010251 NaN 7.9102 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 51615 + 34163 30932 21787 21798 -0.015944517339335107 QTQRPNLIG 9 Unmodified _QTQRPNLIG_ 0 0 0 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 MSMS UPN47_class_I_Rep_1 2 513.7898559570312 2 513.788173 1025.56179 NaN NaN NaN NaN NaN NaN NaN 34.653 1 38.339 37.839 38.839 3.6859 0 0 0 0.37891 1 6263 6263 5.7319 0.50118 1 34164 1362 21788 21799 39151 39151 0.05003377049024493 QTREHALL 8 Unmodified _QTREHALL_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000509116.1_1_4:135966876-135967059:+|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_2 3 484.2695007324219 2 484.269616 966.524678 -0.17646 -8.5452E-05 -0.42959 -0.00020804 -0.60605 -0.00029349 484.2694459739136 21.703 0.83769 25.127 24.768 25.606 3.4241 140 91 2 0 0 0 0.82752 1 2444 2444 15.847 0 1 82229 34165 3732 21789 21800 39152 39152 0.04007705503283887 QTREHALL 8 Unmodified _QTREHALL_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000509116.1_1_4:135966876-135967059:+|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 484.269616 966.524678 -0.17646 -8.5452E-05 -0.42959 -0.00020804 -0.60605 -0.00029349 484.2694459739136 21.703 0.83769 25.127 24.768 25.606 3.4241 -0.1002 -0.00015235 NaN 15.847 140 91 2 NaN NaN NaN NaN 0 NaN NaN 0 82229 34166 3732 21789 21800 0.04007705503283887 QTREHRHRRRY 11 Unmodified _QTREHRHRRRY_ 0 0 0 REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.2898559570312 3 532.289317 1593.84612 0.27586 0.00014684 0.55148 0.00029355 0.82735 0.00044039 532.2896038992898 51.456 0.80272 51.456 51.139 51.942 0 228 90 4 0 0 0 0.67462 4 10906 10906;10950;10996;11031 1.0136 0.91873 1 1121400 + 34167 20364 21790 21801 39153;39154;39155;39156 39153 0.07295195586084446 QTREHRHRRRY 11 Unmodified _QTREHRHRRRY_ 0 0 0 REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 532.2901000976562 3 532.289317 1593.84612 0.32611 0.00017358 1.0244 0.00054526 1.3505 0.00071884 532.2902700134894 46.168 0.74886 49.687 49.421 50.17 3.5192 103 48 3 0 0 0 0.68132 1 8998 8998 0.40827 0 1 336500 + 34168 20364 21790 21801 39157 39157 0.07295195586084446 QTSFKPGLL 9 Unmodified _QTSFKPGLL_ 0 0 0 REV__L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|122|2|anti-sense REV__L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|122|2|anti-sense MSMS UPN47_class_I_Rep_1 2 495.7952880859375 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 73.734 1 77.12 76.62 77.62 3.3861 0 0 0 0.38478 1 18117 18117 4.3292 0.73274 1 + 34169 29306 21791 21802 39158 39158 0.05938644448622199 QTTSKSTIKV 10 Unmodified _QTTSKSTIKV_ 0 0 0 REV__L1ME4a_dup25219|chr12:104663336-104663602:-|1.176341882594022|0.0073759861146878|7.32|151.0|20|2|anti-sense REV__L1ME4a_dup25219|chr12:104663336-104663602:-|1.176341882594022|0.0073759861146878|7.32|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_2 6 546.83056640625 2 546.816596 1091.61864 NaN NaN NaN NaN NaN NaN NaN 45.578 1 49.336 48.836 49.836 3.7579 0 0 0 0.53105 1 8815 8815 3.5965 0 1 + 34170 28223 21792 21803 39159 39159 0.07649379814915847 QTTYMTGLI 9 Unmodified _QTTYMTGLI_ 0 0 0 REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|22|1|sense REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|22|1|sense MSMS UPN46_class_I_Rep_3 1 514.2600708007812 2 514.260068 1026.50558 NaN NaN NaN NaN NaN NaN NaN 79.951 1 79.951 79.451 80.451 0 0 0 0 0.22485 1 18810 18810 14.838 0 1 + 34171 30559 21793 21804 39160 39160 -0.006610119026390748 QTVKPLTL 8 Unmodified _QTVKPLTL_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10;ENST00000574576.2_1_16:67968465-67968768:-|nuORF ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MSMS UPN48_class_I_Rep_1 5 450.2814636230469 2 450.28166 898.548768 0.023795 1.0714E-05 -0.29819 -0.00013427 -0.2744 -0.00012356 450.2814065894679 41.813 1.2037 45.321 44.932 46.135 3.5079 279 118 3 0 0 0 0.82752 2 7687 7687;7727 111.29 29.674 1 1238200 34172 5554 21794 21805 39161;39162 39161 0.09543545936935516 QTVKPLTL 8 Unmodified _QTVKPLTL_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10;ENST00000574576.2_1_16:67968465-67968768:-|nuORF ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 450.28166 898.548768 0.090017 4.0533E-05 -0.29531 -0.00013297 -0.20529 -9.2439E-05 450.28141450081233 41.525 1.2578 45.275 44.85 46.108 3.7508 -0.011247 2.4458E-05 NaN 111.29 302 134 3 NaN NaN NaN NaN 0 NaN NaN 0 1148600 34173 5554 21794 21805 0.09543545936935516 QTVKPLTL 8 Unmodified _QTVKPLTL_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10;ENST00000574576.2_1_16:67968465-67968768:-|nuORF ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 450.28166 898.548768 0.080419 3.6211E-05 -0.39291 -0.00017692 -0.31249 -0.00014071 450.281377493002 41.618 1.2625 45.264 44.863 46.126 3.6458 -0.02308 -6.3438E-05 NaN 111.29 297 124 3 NaN NaN NaN NaN 0 NaN NaN 0 1102700 34174 5554 21794 21805 0.09543545936935516 QTVPFVPTYW 10 Unmodified _QTVPFVPTYW_ 0 0 0 REV__AluJo_dup66823|chr17:67906913-67907201:+|1.7355117778997666|0.0784687652595684|4.47|151.0|9|3|sense REV__AluJo_dup66823|chr17:67906913-67907201:+|1.7355117778997666|0.0784687652595684|4.47|151.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 619.3181762695312 2 619.316232 1236.61791 NaN NaN NaN NaN NaN NaN NaN 67.667 1 71.028 70.528 71.528 3.3611 0 0 0 0.53105 1 16286 16286 1.4819 0.15237 1 + 34175 17014 21795 21806 39163 39163 0.009065851658533575 QTVQALKRG 9 Unmodified _QTVQALKRG_ 0 0 0 REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 500.7981872558594 2 500.79854 999.582528 0.25089 0.00012564 -0.49739 -0.00024909 -0.2465 -0.00012345 500.79815331144584 85.429 0.52788 89.02 88.783 89.311 3.5914 100 71 2 0 0 0 0.46869 1 21340 21340 3.9444 0 1 159740 + 34176 23192 21796 21807 39164 39164 0.08271967428697735 QTVQALKRG 9 Unmodified _QTVQALKRG_ 0 0 0 REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 500.797119140625 2 500.79854 999.582528 0.32339 0.00016195 -1.2355 -0.00061875 -0.91214 -0.0004568 500.797720103935 85.458 0.24644 88.891 88.765 89.011 3.4329 38 31 2 0 0 0 0.46869 1 21251 21251 3.9444 0 1 120900 + 34177 23192 21796 21807 39165 39165 0.08271967428697735 QTVQALKRG 9 Unmodified _QTVQALKRG_ 0 0 0 REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF REV__ENST00000596586.5_3_19:46283105-46288963:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.7967529296875 2 500.79854 999.582528 0.27369 0.00013706 -1.6098 -0.00080617 -1.3361 -0.00066911 500.79744261554526 85.432 0.15639 88.803 88.76 88.917 3.3716 26 21 2 0 0 0 0.46869 1 21419 21419 3.9444 0 1 180070 + 34178 23192 21796 21807 39166 39166 0.08271967428697735 QTVSVAVTQF 10 Unmodified _QTVSVAVTQF_ 0 0 0 MER58A_dup12252|chr19:3167648-3167838:+|1.2324648857549068|0.0553641897348424|4.48|151.0|11|2|anti-sense MER58A_dup12252|chr19:3167648-3167838:+|1.2324648857549068|0.0553641897348424|4.48|151.0|11|2|anti-sense MER58A_dup12252|chr19:3167648-3167838:+|1.2324648857549068|0.0553641897348424|4.48|151.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.2901000976562 2 540.290214 1078.56587 0.42325 0.00022868 -0.2702 -0.00014599 0.15305 8.2692E-05 540.2899926219161 49.228 1.1041 52.462 51.923 53.027 3.2345 138 65 3 0 0 0 0.28952 2 10718 10718;10841 34.932 0 1 521880 34179 16135 21797 21808 39167;39168 39167 0.029734217520854145 QTYREWHD 8 Unmodified _QTYREWHD_ 0 0 0 REV__ENST00000486453.1_1_1:181003143-181018564:+|nuORF REV__ENST00000486453.1_1_1:181003143-181018564:+|nuORF MSMS UPN48_class_I_Rep_2 6 567.74951171875 2 567.751787 1133.48902 NaN NaN NaN NaN NaN NaN NaN 19.874 1 23.523 23.023 24.023 3.6497 0 0 0 0.40643 1 1600 1600 2.0598 0.21551 1 + 34180 19699 21798 21809 39169 39169 -0.0723837674436254 QTYVSGTLRF 10 Unmodified _QTYVSGTLRF_ 0 0 0 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 586.3104248046875 2 586.308938 1170.60332 0.42875 0.00025138 0.0056194 3.2947E-06 0.43437 0.00025468 586.3090230315378 52.415 0.39135 55.938 55.848 56.24 3.5227 55 34 2 0 0 0 0.37703 2 10947 10889;10947 21.59 7.6841 1 125340 34181 427 21799 21810 39170;39171 39171 0.02484513017725476 QTYVSGTLRF 10 Unmodified _QTYVSGTLRF_ 0 0 0 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 586.3092041015625 2 586.308938 1170.60332 0.51551 0.00030225 -0.077007 -4.515E-05 0.4385 0.0002571 586.3088224762782 52.409 0.50567 56.048 55.769 56.275 3.639 57 45 2 0 0 0 0.43841 2 10858 10858;10905 16.566 7.0219 1 126230 34182 427 21799 21810 39172;39173 39172 0.02484513017725476 QVADFLQNI 9 Unmodified _QVADFLQNI_ 0 0 0 ENST00000494312.5_1_10:58119773-58119881:-|nuORF;nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT ENST00000494312.5_1_10:58119773-58119881:-|nuORF ENST00000494312.5_1_10:58119773-58119881:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 524.2769165039062 2 524.277106 1046.53966 0.33793 0.00017717 -0.04107 -2.1532E-05 0.29686 0.00015564 524.2768685231281 78.63 0.22386 82.076 81.977 82.2 3.4456 28 22 2 0 0 0 0.12251 1 19556 19556 5.2969 0 1 70391 34183 2401 21800 21811 39174 39174 0.01825152580613576 QVAFSTILL 9 Unmodified _QVAFSTILL_ 0 0 0 REV__L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|169|3|anti-sense REV__L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|169|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2953796386719 2 496.294768 990.574983 0.028273 1.4032E-05 1.1048 0.00054832 1.1331 0.00056236 496.2951278629014 29.198 0.051788 29.198 29.166 29.217 0 8 3 3 0 0 0 0.48643 1 4595 4595 2.0598 0 1 207750 + 34184 24806 21801 21812 39175 39175 0.07931815108440787 QVANSAFVER 10 Unmodified _QVANSAFVER_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_1 5 560.7913818359375 2 560.790912 1119.56727 0.51624 0.0002895 -0.29038 -0.00016284 0.22586 0.00012666 560.7908090686464 31.378 0.50467 34.912 34.736 35.241 3.5342 76 53 2 0 0 0 0.44952 4 4643 4601;4606;4643;4678 15.739 6.9932 1 155600 34185 1207;1424 21802 21813 39176;39177;39178;39179 39178 0.012270558408545185 QVANSAFVER 10 Unmodified _QVANSAFVER_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_2 6 560.7906494140625 2 560.790912 1119.56727 0.49831 0.00027945 -0.16469 -9.2358E-05 0.33362 0.00018709 560.7907559306482 31.324 0.56942 34.965 34.736 35.306 3.641 95 59 2 0 0 0 0.50483 5 4729 4660;4666;4693;4729;4749 11.518 6.989 1 155900 34186 1207;1424 21802 21813 39180;39181;39182;39183;39184 39183 0.012270558408545185 QVANSAFVER 10 Unmodified _QVANSAFVER_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN48_class_I_Rep_3 7 560.791015625 2 560.790912 1119.56727 0.32029 0.00017961 -0.12088 -6.7787E-05 0.19941 0.00011183 560.7908834443377 31.224 0.58568 34.925 34.685 35.271 3.7015 113 63 2 0 0 0 0.50483 3 4590 4560;4590;4629 11.518 7.5735 1 137710 34187 1207;1424 21802 21813 39185;39186;39187 39186 0.012270558408545185 QVAPVANSY 9 Unmodified _QVAPVANSY_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS UPN46_class_I_Rep_3 1 474.7430114746094 2 474.742899 947.471246 0.23963 0.00011376 -0.43445 -0.00020625 -0.19482 -9.249E-05 474.74274158932735 41.774 0.50023 41.774 41.616 42.116 0 73 56 2 0 0 0 0.043452 2 8206 8206;8261 51.63 7.6407 1 204520 34188 3769 21803 21814 39188;39189 39188 -0.004590919992438103 QVAQASDII 9 Unmodified _QVAQASDII_ 0 0 0 REV__ENST00000373851.6_1_9:123874787-123912836:+|nuORF REV__ENST00000373851.6_1_9:123874787-123912836:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 472.75604248046875 2 472.756007 943.497461 0.13755 6.5028E-05 0.30995 0.00014653 0.4475 0.00021156 472.7559571595205 43.908 0.41503 47.67 47.489 47.904 3.7617 41 31 2 0 0 0 0.42249 1 8348 8348 6.7232 0 1 72967 + 34189 18670 21804 21815 39190 39190 0.023451771722420744 QVAQTILAL 9 Unmodified _QVAQTILAL_ 0 0 0 REV__nc|ENSG00000116337|Q01433-5|AMPD2 REV__nc|ENSG00000116337|Q01433-5|AMPD2 MULTI-MSMS UPN47_class_I_Rep_3 4 478.792236328125 2 478.792392 955.570232 -0.025532 -1.2224E-05 0.19315 9.2477E-05 0.16761 8.0253E-05 478.79234423245015 59.062 0.69989 62.228 61.728 62.428 3.1658 63 41 3 0 0 0 0.33908 1 13751 13751 11.495 0 1 140660 + 34190 18602 21805 21816 39191 39191 0.09066930965661868 QVDEKLEY 8 Unmodified _QVDEKLEY_ 0 0 0 REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|50|2|sense REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|50|2|sense MSMS UPN47_class_I_Rep_2 3 512.253173828125 2 512.253297 1022.49204 NaN NaN NaN NaN NaN NaN NaN 49.876 1 53.219 52.719 53.719 3.3431 0 0 0 0.40604 1 10914 10914 2.5775 0 1 + 34191 29885 21806 21817 39192 39192 -0.018305464102354563 QVDLTWDDS 9 Unmodified _QVDLTWDDS_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MSMS UPN47_class_I_Rep_2 3 539.7380981445312 2 539.738011 1077.46147 NaN NaN NaN NaN NaN NaN NaN 47.655 1 51.004 50.504 51.504 3.3492 0 0 0 0.37692 1 10242 10242 6.2058 0.9089 1 + 34192 21019 21807 21818 39193 39193 -0.0741632479528107 QVDMNTAANN 10 Unmodified _QVDMNTAANN_ 0 0 0 REV__L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|35|2|anti-sense REV__L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 539.2344360351562 2 539.235113 1076.45567 0.17346 9.3533E-05 0.99095 0.00053435 1.1644 0.00062789 539.2355419555053 47.328 0.35537 51.023 50.685 51.041 3.6951 36 26 2 0 0 0 0.53414 2 10068 10068;10091 7.609 0.31972 1 133620 + 34193 25745 21808 21819 39194;39195 39194 -0.0794974657860621 QVDMNTAANN 10 Unmodified _QVDMNTAANN_ 0 0 0 REV__L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|35|2|anti-sense REV__L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_1 2 539.2359008789062 2 539.235113 1076.45567 NaN NaN NaN NaN NaN NaN NaN 47.407 1 51.102 50.602 51.602 3.6951 0 0 0 0.53105 1 10144 10144 12.873 2.7987 1 + 34194 25745 21808 21819 39196 39196 -0.0794974657860621 QVDMNTAANN 10 Unmodified _QVDMNTAANN_ 0 0 0 REV__L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|35|2|anti-sense REV__L1MB2_dup5306|chr10:49958619-49959148:-|3.387421350748429|0.2552391743081718|3.73|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_2 3 539.235595703125 2 539.235113 1076.45567 NaN NaN NaN NaN NaN NaN NaN 47.567 1 50.916 50.416 51.416 3.3492 0 0 0 0.53105 1 10223 10223 12.873 2.7987 1 + 34195 25745 21808 21819 39197 39197 -0.0794974657860621 QVDMQKPIVF 10 Unmodified _QVDMQKPIVF_ 0 0 0 L1M4_dup13254|chr10:92852076-92853895:+|2.220816410183522|0.026546973827159|6.39|151.0|17|1|sense L1M4_dup13254|chr10:92852076-92853895:+|2.220816410183522|0.026546973827159|6.39|151.0|17|1|sense L1M4_dup13254|chr10:92852076-92853895:+|2.220816410183522|0.026546973827159|6.39|151.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 602.8224487304688 2 602.823366 1203.63218 NaN NaN NaN NaN NaN NaN NaN 103.06 1 106.8 106.3 107.3 3.7434 0 0 0 0.53105 1 24349 24349 8.1555 1.9497 1 34196 8835 21809 21820 39198 39198 0.03850914322470089 QVDRGRNW 8 Unmodified _QVDRGRNW_ 0 0 0 REV__ENST00000490670.1_1_1:54670749-54673061:+|nuORF REV__ENST00000490670.1_1_1:54670749-54673061:+|nuORF MSMS UPN47_class_I_Rep_1 2 515.7615356445312 2 515.762489 1029.51043 NaN NaN NaN NaN NaN NaN NaN 25.695 1 29.458 28.958 29.958 3.7624 0 0 0 0.40643 1 3565 3565 2.0598 0.21551 1 + 34197 22626 21810 21821 39199 39199 -0.003149469250047332 QVDSFVQKF 9 Unmodified _QVDSFVQKF_ 0 0 0 REV__nc|ENSG00000198947|P11532-4|DMD REV__nc|ENSG00000198947|P11532-4|DMD MULTI-MSMS UPN48_class_I_Rep_1 5 549.2859497070312 2 549.284931 1096.55531 0.46028 0.00025282 0.38351 0.00021066 0.84379 0.00046348 549.285136537371 47.271 0.58863 50.793 50.45 51.039 3.5219 58 40 2 0 0 0 0.38714 1 9352 9352 8.7454 0 1 196530 + 34198 21168 21811 21822 39200 39200 0.010894390976773138 QVDVTQTEY 9 Unmodified _QVDVTQTEY_ 0 0 0 ENST00000342355.8_1_11:30965860-31263019:-|nuORF;nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1 ENST00000342355.8_1_11:30965860-31263019:-|nuORF ENST00000342355.8_1_11:30965860-31263019:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 541.7542724609375 2 541.753661 1081.49277 0.41218 0.0002233 0.33633 0.00018221 0.74851 0.00040551 541.7537931670943 57.828 0.47933 61.265 61.046 61.525 3.437 49 28 2 0 0 0 0.027484 1 13323 13323 58.679 4.846 1 140630 34199 4501 21812 21823 39201 39201 -0.044717517611843505 QVEEDYFY 8 Unmodified _QVEEDYFY_ 0 0 0 L1MB7_dup7746|chr6:82206405-82207930:+|1.213423336986982|0.3412498862245418|1.83|149.0|72|1|anti-sense L1MB7_dup7746|chr6:82206405-82207930:+|1.213423336986982|0.3412498862245418|1.83|149.0|72|1|anti-sense L1MB7_dup7746|chr6:82206405-82207930:+|1.213423336986982|0.3412498862245418|1.83|149.0|72|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.2017822265625 2 546.729655 1091.44476 NaN NaN NaN NaN NaN NaN NaN 115.14 1 118.72 118.22 119.22 3.5809 0 0 0 0.40738 1 28477 28477 0.79363 0 1 34200 10874 21813 21824 39202 39202 -0.09730825681231181 QVELTVLDY 9 Unmodified _QVELTVLDY_ 0 0 0 nc|ENSG00000129990|O00445-2|SYT5;ENSG00000129990|ENST00000354308|SYT5 nc|ENSG00000129990|O00445-2|SYT5 nc|ENSG00000129990|O00445-2|SYT5 MULTI-MSMS UPN47_class_I_Rep_3 4 540.2835083007812 2 540.284597 1078.55464 0.38158 0.00020616 -0.45625 -0.00024651 -0.074677 -4.0347E-05 540.2839888230576 62.25 0.26155 65.416 65.281 65.543 3.1667 25 19 2 0 0 0 0.42249 1 14756 14756 6.7232 0 1 101340 34201 2637 21814 21825 39203 39203 0.01850599657973362 QVFDQKEQAY 10 Unmodified _QVFDQKEQAY_ 0 0 0 REV__ENST00000487002.1_1_1:155279855-155282231:+|nuORF REV__ENST00000487002.1_1_1:155279855-155282231:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.303955078125 2 628.30131 1254.58807 NaN NaN NaN NaN NaN NaN NaN 36.129 1 36.129 35.629 36.629 0 0 0 0 0.53105 1 6662 6662 8.1555 0.24537 1 + 34202 19892 21815 21826 39204 39204 -0.02904398570126432 QVFKFAAA 8 Unmodified _QVFKFAAA_ 0 0 0 REV__ENSG00000135905.20,DOCK10,chr2,-,I56.1,224775116,224778137|27|6.66|1|intron REV__ENSG00000135905.20,DOCK10,chr2,-,I56.1,224775116,224778137|27|6.66|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 441.2474365234375 2 441.247621 880.480688 -0.028678 -1.2654E-05 -0.33818 -0.00014922 -0.36686 -0.00016188 441.24748751730027 108.79 0.44218 112.42 112.26 112.7 3.6321 77 50 2 0 0 0 0.82752 1 26401 26401 2.5775 0 1 4453800 + 34203 19161 21816 21827 39205 39205 0.03566721076936119 QVFMRTRG 8 Unmodified _QVFMRTRG_ 0 0 0 L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|28|2|sense L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|28|2|sense L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 497.7651062011719 2 497.766186 993.517819 NaN NaN NaN NaN NaN NaN NaN 118.73 1 122.34 121.84 122.84 3.6189 0 0 0 0.40604 1 28965 28965 2.5775 0 1 34204 12746 21817 21828 39206 39206 0.02080069351052316 QVFRLLYY 8 Unmodified _QVFRLLYY_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|102|3|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|102|3|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|102|3|sense MSMS UPN48_class_I_Rep_1 5 551.5579833984375 2 551.30821 1100.60187 NaN NaN NaN NaN NaN NaN NaN 30.636 1 34.178 33.678 34.678 3.542 0 0 0 0.40746 1 4424 4424 0.69038 0 1 34205 8254 21818 21829 39207 39207 0.05558923719604536 QVFTAASW 8 Unmodified _QVFTAASW_ 0 0 0 nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3 nc|ENSG00000160183|P57727-4|TMPRSS3 nc|ENSG00000160183|P57727-4|TMPRSS3 MSMS UPN47_class_I_Rep_1 2 455.2368469238281 2 455.226885 908.439217 NaN NaN NaN NaN NaN NaN NaN 96.455 1 100.23 99.732 100.73 3.7767 0 0 0 0.40604 1 23912 23912 2.5775 0 1 34206 3857 21819 21830 39208 39208 -0.018664596823896318 QVGGKSVPKK 10 Unmodified _QVGGKSVPKK_ 0 0 0 REV__L1ME1_dup29915|chr20:48778602-48780008:+|1.7107066545275451|0.0157057526794509|6.77|151.0|14|1|sense REV__L1ME1_dup29915|chr20:48778602-48780008:+|1.7107066545275451|0.0157057526794509|6.77|151.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 514.2984619140625 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 86.972 1 90.689 90.189 91.189 3.7171 0 0 0 0.53105 1 20691 20691 5.7319 0.50118 1 + 34207 27754 21820 21831 39209 39209 0.10633424605566688 QVGLRIHQR 9 Unmodified _QVGLRIHQR_ 0 0 0 ENSG00000196456|ENST00000329630|ZNF775 ENSG00000196456|ENST00000329630|ZNF775 ENSG00000196456|ENST00000329630|ZNF775 MSMS UPN47_class_I_Rep_2 3 553.8306274414062 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 82.503 1 85.902 85.402 86.402 3.3984 0 0 0 0.39518 1 20564 20564 1.8442 0 1 34208 5309 21821 21832 39210 39210 0.09826167305504896 QVGQRGSELF 10 Unmodified _QVGQRGSELF_ 0 0 0 REV__AluJb_dup29622|chr4:39723040-39723330:-|1.5068574790829072|0.0071986049619634|7.71|151.0|10|3|sense REV__AluJb_dup29622|chr4:39723040-39723330:-|1.5068574790829072|0.0071986049619634|7.71|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.791015625 2 560.790912 1119.56727 0.51624 0.0002895 -0.29038 -0.00016284 0.22586 0.00012666 560.7908090686464 31.378 0.50467 34.912 34.736 35.241 3.5342 76 53 2 0 0 0 0.56155 1 4718 4718 2.7352 0 1 155600 + 34209 16936 21822 21833 39211 39211 0.012270558408545185 QVGRLPEQV 9 Unmodified _QVGRLPEQV_ 0 0 0 REV__ENST00000564556.1_1_16:2048515-2049688:-|nuORF REV__ENST00000564556.1_1_16:2048515-2049688:-|nuORF MSMS UPN48_class_I_Rep_2 6 513.2908935546875 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 76.754 1 80.366 79.866 80.866 3.6116 0 0 0 0.38916 1 18132 18132 3.2813 0.28607 1 + 34210 23052 21823 21834 39212 39212 0.055242611917947215 QVGRLPEQV 9 Unmodified _QVGRLPEQV_ 0 0 0 REV__ENST00000564556.1_1_16:2048515-2049688:-|nuORF REV__ENST00000564556.1_1_16:2048515-2049688:-|nuORF MSMS UPN48_class_I_Rep_2 6 513.2907104492188 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 76.81 1 80.421 79.921 80.921 3.6116 0 0 0 0.38916 1 18146 18146 3.2813 0.28607 1 + 34211 23052 21823 21834 39213 39213 0.055242611917947215 QVGVTQLSR 9 Unmodified _QVGVTQLSR_ 0 0 0 L1PA2_dup4620|chr17:61110230-61116238:+|3.9396358515013454|0.1650750810842491|4.58|151.0|352|3|anti-sense L1PA2_dup4620|chr17:61110230-61116238:+|3.9396358515013454|0.1650750810842491|4.58|151.0|352|3|anti-sense L1PA2_dup4620|chr17:61110230-61116238:+|3.9396358515013454|0.1650750810842491|4.58|151.0|352|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.28106689453125 2 494.282723 986.550893 NaN NaN NaN NaN NaN NaN NaN 51.919 1 55.517 55.017 56.017 3.5979 0 0 0 0.3967 1 10683 10683 1.4819 0 1 34212 14215 21824 21835 39214 39214 0.05707974674749039 QVGYVPEKY 9 Unmodified _QVGYVPEKY_ 0 0 0 nc|ENSG00000137478|O94868-3|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;ENST00000409263.5_1_11:72552542-72554538:-|nuORF nc|ENSG00000137478|O94868-3|FCHSD2 nc|ENSG00000137478|O94868-3|FCHSD2 MSMS UPN46_class_I_Rep_3 1 541.7982177734375 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 54.332 1 54.332 53.832 54.832 0 0 0 0 0.13551 1 11755 11755 20.454 7.4112 1 34213 3027 21825 21836 39215 39215 0.0069003672338112665 QVHCISIYY 9 Unmodified _QVHCISIYY_ 0 0 0 L1M4b_dup4209|chr20:13372620-13374349:-|1.0478909854945109|0.1326846554390142|2.98|151.0|104|3|anti-sense L1M4b_dup4209|chr20:13372620-13374349:-|1.0478909854945109|0.1326846554390142|2.98|151.0|104|3|anti-sense L1M4b_dup4209|chr20:13372620-13374349:-|1.0478909854945109|0.1326846554390142|2.98|151.0|104|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.2748413085938 2 563.273509 1124.53247 0.073507 4.1404E-05 1.6108 0.00090733 1.6843 0.00094874 563.274411650335 42.211 0.361 45.45 45.29 45.651 3.2394 39 26 2 0 0 0 0.42249 1 8691 8691 6.7232 0.51738 1 66991 34214 9027 21826 21837 39216 39216 -0.024819032914592754 QVHFVHFL 8 Unmodified _QVHFVHFL_ 0 0 0 L1MC5a_dup1059|chr1:235296869-235298289:+|3.4525887704809186|0.027507883783888|6.97|151.0|67|1|anti-sense L1MC5a_dup1059|chr1:235296869-235298289:+|3.4525887704809186|0.027507883783888|6.97|151.0|67|1|anti-sense L1MC5a_dup1059|chr1:235296869-235298289:+|3.4525887704809186|0.027507883783888|6.97|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_2 3 513.78955078125 2 513.779619 1025.54469 NaN NaN NaN NaN NaN NaN NaN 34.524 1 37.949 37.449 38.449 3.4253 0 0 0 0.40604 1 6256 6256 2.5775 0 1 34215 11707 21827 21838 39217 39217 0.03293501233883944 QVHFWFYI 8 Unmodified _QVHFWFYI_ 0 0 0 L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense MSMS UPN46_class_I_Rep_3 1 570.2881469726562 2 570.287277 1138.56 NaN NaN NaN NaN NaN NaN NaN 27.522 1 27.522 27.022 28.022 0 0 0 0 0.40738 1 4097 4097 0.79363 0 1 34216 13917 21828 21839 39218 39218 -0.0037363196888691164 QVHNLLLTY 9 Unmodified _QVHNLLLTY_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS UPN48_class_I_Rep_2 6 550.80859375 2 550.808574 1099.60259 0.61552 0.00033903 -0.028933 -1.5937E-05 0.58658 0.0003231 550.8085315961081 55.262 0.86146 58.818 58.463 59.324 3.5559 109 49 3 0 0 0 0.056917 2 11742 11742;11824 46.021 0 1 340430 34217 4476 21829 21840 39219;39220 39219 0.05677718368656315 QVHNLLLTY 9 Unmodified _QVHNLLLTY_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS UPN48_class_I_Rep_3 7 550.8092041015625 2 550.808574 1099.60259 0.28503 0.000157 0.31408 0.000173 0.59912 0.00033 550.8087403314114 55.279 0.80684 58.834 58.504 59.311 3.5554 107 47 3 0 0 0 0.0081951 2 11673 11631;11673 71.134 0 1 313690 34218 4476 21829 21840 39221;39222 39222 0.05677718368656315 QVIELAGNQQT 11 Unmodified _QVIELAGNQQT_ 0 0 0 CON__Q2KJC7 CON__Q2KJC7 CON__Q2KJC7 MSMS UPN47_class_I_Rep_2 3 600.8141479492188 2 600.814584 1199.61462 NaN NaN NaN NaN NaN NaN NaN 74.784 1 78.097 77.597 78.597 3.3127 0 0 0 0.38417 1 18438 18438 2.9952 0.49676 1 + 34219 649 21830 21841 39223 39223 0.02279290321166627 QVIHHLWPPA 10 Unmodified _QVIHHLWPPA_ 0 0 0 AluJb_dup29627|chr4:39734516-39734818:+|1.385290244742229|0.0262679970182656|5.72|151.0|17|2|anti-sense AluJb_dup29627|chr4:39734516-39734818:+|1.385290244742229|0.0262679970182656|5.72|151.0|17|2|anti-sense AluJb_dup29627|chr4:39734516-39734818:+|1.385290244742229|0.0262679970182656|5.72|151.0|17|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 599.3295288085938 2 599.330008 1196.64546 0.52396 0.00031403 -0.7151 -0.00042858 -0.19114 -0.00011456 599.3292989436693 57.737 1.0359 61.231 60.723 61.759 3.4942 170 77 3 0 0 0 0.56033 3 12565 12524;12565;12606 3.5965 0.8613 1 298880 34220 40 21831 21842 39224;39225;39226 39225 0.055005332167411325 QVKARKLL 8 Unmodified _QVKARKLL_ 0 0 0 REV__ENSG00000272333|ENST00000420124|KMT2B REV__ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS UPN47_class_I_Rep_3 4 478.3243713378906 2 478.324194 954.633835 -0.70881 -0.00033904 0.29675 0.00014194 -0.41207 -0.0001971 478.3243191456543 20.338 0.88905 23.688 23.356 24.245 3.3496 100 78 2 0 0 0 0.82752 2 2032 2032;2119 4.756 0 1 57442 + 34221 21421 21832 21843 39227;39228 39227 0.15470336193425283 QVKEIQII 8 Unmodified _QVKEIQII_ 0 0 0 REV__Tigger3a_dup4912|chr18:26083391-26083756:-|1.123066825965674|0.0853494870487532|3.72|151.0|32|3|anti-sense REV__Tigger3a_dup4912|chr18:26083391-26083756:-|1.123066825965674|0.0853494870487532|3.72|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8111267089844 2 485.800217 969.585882 NaN NaN NaN NaN NaN NaN NaN 52.402 1 55.735 55.235 56.235 3.3332 0 0 0 0.3978 1 11686 11686 8.7454 0 1 + 34222 32720 21833 21844 39229 39229 0.09987217482705546 QVKFTAQRR 9 Unmodified _QVKFTAQRR_ 0 0 0 REV__MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|3|1|sense REV__MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 567.3302001953125 2 567.330539 1132.64652 0.46341 0.00026291 -0.88145 -0.00050007 -0.41804 -0.00023716 567.3298887962327 88.412 0.35521 88.412 88.21 88.566 0 62 35 3 0 0 0 0.12207 1 21248 21248 5.7319 5.7319 1 498850 + 34223 31768 21834 21845 39230 39230 0.08550747585650242 QVKLKVVF 8 Unmodified _QVKLKVVF_ 0 0 0 REV__ENSG00000204866|ENST00000377693|IGFL2 REV__ENSG00000204866|ENST00000377693|IGFL2 MULTI-MSMS UPN47_class_I_Rep_2 3 480.8155517578125 2 480.81567 959.616788 0.14444 6.9448E-05 -0.35488 -0.00017063 -0.21044 -0.00010118 480.81546824883725 49.383 1.1955 52.729 52.245 53.44 3.3465 135 77 3 0 0 0 0.82752 2 10884 10884;10930 9.3474 0 1 180590 + 34224 21209 21835 21846 39231;39232 39231 0.13536415587611828 QVKLKVVF 8 Unmodified _QVKLKVVF_ 0 0 0 REV__ENSG00000204866|ENST00000377693|IGFL2 REV__ENSG00000204866|ENST00000377693|IGFL2 MSMS UPN47_class_I_Rep_3 4 480.8160400390625 2 480.81567 959.616788 NaN NaN NaN NaN NaN NaN NaN 49.913 1 53.139 52.639 53.639 3.2262 0 0 0 0.39819 1 10981 10981 8.5933 0 1 + 34225 21209 21835 21846 39233 39233 0.13536415587611828 QVKLKVVF 8 Unmodified _QVKLKVVF_ 0 0 0 REV__ENSG00000204866|ENST00000377693|IGFL2 REV__ENSG00000204866|ENST00000377693|IGFL2 MSMS UPN47_class_I_Rep_3 4 480.81536865234375 2 480.81567 959.616788 NaN NaN NaN NaN NaN NaN NaN 50.16 1 53.386 52.886 53.886 3.2262 0 0 0 0.40404 1 11057 11057 5.2307 0 1 + 34226 21209 21835 21846 39234 39234 0.13536415587611828 QVKLLVEELPL 11 Unmodified _QVKLLVEELPL_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-SECPEP UPN47_class_I_Rep_3 4 427.26434326171875 3 427.598989 1279.77514 -0.55551 -0.00023753 -0.1214 -5.1909E-05 -0.6769 -0.00028944 427.59894809597074 55.995 0.85648 59.17 59.013 59.87 3.1754 106 54 3 0 0 0 22.551 1 12815 12815 0.45452 0.45452 1 929110 34227 5493 21836 21847 39235 39235 0.14644244985379373 QVKNKKKFK 9 Unmodified _QVKNKKKFK_ 0 0 0 L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|13|2|sense L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|13|2|sense L1MB7_dup4982|chr3:172230534-172231458:+|2.587094479909817|0.030350527015273|6.41|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 574.3682250976562 2 574.369133 1146.72371 NaN NaN NaN NaN NaN NaN NaN 12.522 1 12.522 12.022 13.022 0 0 0 0 0.39518 1 135 135 1.8442 0 1 34228 10843 21837 21848 39236 39236 0.15621965801983606 QVKVVKVKKS 10 Unmodified _QVKVVKVKKS_ 0 0 0 nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000505501.1_1_4:56724546-56734701:+|nuORF nc|ENSG00000090989|Q9NV70-2|EXOC1 nc|ENSG00000090989|Q9NV70-2|EXOC1 MSMS UPN48_class_I_Rep_1 5 572.255126953125 2 571.884616 1141.75468 NaN NaN NaN NaN NaN NaN NaN 112.29 1 115.92 115.42 116.42 3.6321 0 0 0 0.53105 1 27244 27244 0.40072 0.093686 1 34229 1361 21838 21849 39237 39237 0.1894711911622835 QVLDHSTWT 9 Unmodified _QVLDHSTWT_ 0 0 0 ENST00000420940.6_1_3:39136851-39137028:+|nuORF ENST00000420940.6_1_3:39136851-39137028:+|nuORF ENST00000420940.6_1_3:39136851-39137028:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 544.2658081054688 2 543.764363 1085.51417 0.1385 7.5314E-05 0.049355 2.6837E-05 0.18786 0.00010215 543.764321230152 31.042 0.73719 31.042 30.749 31.486 0 104 59 2 0 0 0 0.48846 1 5064 5064 1.8442 1.8442 1 243190 34230 6681 21839 21850 39238 39238 -0.025163219418118388 QVLEWTWVF 9 Unmodified _QVLEWTWVF_ 0 0 0 L1MB8_dup8842|chrX:47844152-47844958:-|1.044685241142396|0.1943227972562275|2.43|151.0|42|1|anti-sense L1MB8_dup8842|chrX:47844152-47844958:-|1.044685241142396|0.1943227972562275|2.43|151.0|42|1|anti-sense L1MB8_dup8842|chrX:47844152-47844958:-|1.044685241142396|0.1943227972562275|2.43|151.0|42|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 604.3134155273438 2 604.310949 1206.60735 0.60674 0.00036666 -0.73537 -0.00044439 -0.12863 -7.7733E-05 604.310729325613 69.367 0.42058 72.88 72.526 72.946 3.5128 36 31 2 0 0 0 0.42249 1 15932 15932 6.7232 0 1 104820 34231 11037 21840 21851 39239 39239 0.01230602511395773 QVLGRVLQL 9 Unmodified _QVLGRVLQL_ 0 0 0 ENSG00000110719|ENST00000265686|TCIRG1;nc|ENSG00000110719|Q13488-2|TCIRG1 ENSG00000110719|ENST00000265686|TCIRG1 ENSG00000110719|ENST00000265686|TCIRG1 MSMS UPN48_class_I_Rep_2 6 513.326904296875 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.606 1 63.093 62.593 63.593 3.4868 0 0 0 0.072484 1 13091 13091 30.637 5.2372 1 34232 1950 21841 21852 39240 39240 0.12798014985219197 QVLISLSKDIR 11 Unmodified _QVLISLSKDIR_ 0 0 0 REV__HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|57|2|sense REV__HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 636.8876953125 2 636.387719 1270.76089 0.56984 0.00036264 -2.5334 -0.0016122 -1.9635 -0.0012496 636.8871073739016 109.08 0.15392 112.68 112.61 112.76 3.6046 10 8 2 0 0 0 0.52578 1 26884 26884 7.1017 0 1 1773300 + 34233 23788 21842 21853 39241 39241 0.13633592557062002 QVLISLSKDIR 11 Unmodified _QVLISLSKDIR_ 0 0 0 REV__HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|57|2|sense REV__HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|57|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 636.387719 1270.76089 0.51393 0.00032706 -1.9486 -0.0012401 -1.4347 -0.00091303 636.8870675543205 109.5 0.13158 113.03 112.99 113.12 3.5347 0.17788 6.9442E-05 NaN 7.1017 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 740370 + 34234 23788 21842 21853 0.13633592557062002 QVLISLSKDIR 11 Unmodified _QVLISLSKDIR_ 0 0 0 REV__HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|57|2|sense REV__HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|57|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 636.387719 1270.76089 0.62422 0.00039725 -0.63418 -0.00040358 -0.0099583 -6.3373E-06 636.8873794146973 109.17 0.031952 112.85 112.83 112.86 3.6751 -0.0068155 0.0017425 NaN 7.1017 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 361080 + 34235 23788 21842 21853 0.13633592557062002 QVLKYEVLL 9 Unmodified _QVLKYEVLL_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|133|3|sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|133|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.837158203125 2 552.8368 1103.65905 0.43077 0.00023815 -0.49581 -0.0002741 -0.065031 -3.5952E-05 552.8363992803464 61.057 0.9459 64.439 64.074 65.02 3.3815 165 74 3 0 0 0 0.47493 1 14446 14446 3.2813 0 1 419350 + 34236 29205 21843 21854 39242 39242 0.11136346205330483 QVLKYEVLL 9 Unmodified _QVLKYEVLL_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|133|3|sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|133|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.8367919921875 2 552.8368 1103.65905 0.45741 0.00025287 -0.47943 -0.00026505 -0.022021 -1.2174E-05 552.8364651979159 61.354 1.0369 64.62 64.292 65.329 3.2654 145 71 3 0 0 0 0.43153 1 14606 14606 6.2058 0 1 481630 + 34237 29205 21843 21854 39243 39243 0.11136346205330483 QVLLDIKID 9 Unmodified _QVLLDIKID_ 0 0 0 REV__L1MC5a_dup2938|chr3:33086105-33086893:+|3.166584557493066|0.4558279621247127|2.8|151.0|37|1|anti-sense REV__L1MC5a_dup2938|chr3:33086105-33086893:+|3.166584557493066|0.4558279621247127|2.8|151.0|37|1|anti-sense MSMS UPN46_class_I_Rep_3 1 528.8182983398438 2 528.818607 1055.62266 NaN NaN NaN NaN NaN NaN NaN 69.826 1 69.826 69.326 70.326 0 0 0 0 0.3967 1 16019 16019 1.4819 0 1 + 34238 27152 21844 21855 39244 39244 0.09707469308591499 QVLLRGTR 8 Unmodified _QVLLRGTR_ 0 0 0 REV__L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|156|2|anti-sense REV__L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|156|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7945251464844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 27.433 1 31.199 30.699 31.699 3.7662 0 0 0 0.40746 1 4079 4079 0.69038 0 1 + 34239 25409 21845 21856 39245 39245 0.1039228863688777 QVLPKTERL 9 Unmodified _QVLPKTERL_ 0 0 0 REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 542.3298950195312 2 542.329673 1082.64479 0.52671 0.00028565 -0.30102 -0.00016325 0.22569 0.0001224 542.3294359253905 58.697 0.29653 62.184 62.004 62.301 3.487 23 17 2 0 0 0 0.47197 1 12835 12835 3.5965 0 1 138710 + 34240 22622 21846 21857 39246 39246 0.10677693777029162 QVLPKTERL 9 Unmodified _QVLPKTERL_ 0 0 0 REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 542.329673 1082.64479 0.52671 0.00028565 -0.30102 -0.00016325 0.22569 0.0001224 542.3294359253905 58.697 0.29653 62.184 62.004 62.301 3.487 0.04868 -0.00028443 NaN 3.5965 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 138710 + 34241 22622 21846 21857 0.10677693777029162 QVLPKTERL 9 Unmodified _QVLPKTERL_ 0 0 0 REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF REV__ENST00000489884.5_1_7:150777299-150777671:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 542.329673 1082.64479 0.47129 0.0002556 0.33114 0.00017958 0.80243 0.00043518 542.3296997967319 58.688 0.060223 62.211 62.194 62.254 3.5231 0.075658 0.00040124 NaN 3.5965 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66907 + 34242 22622 21846 21857 0.10677693777029162 QVLPVILIM 9 Unmodified _QVLPVILIM_ 0 0 0 ENST00000326799.7_1_10:27405026-27405171:-|nuORF ENST00000326799.7_1_10:27405026-27405171:-|nuORF ENST00000326799.7_1_10:27405026-27405171:-|nuORF MSMS UPN48_class_I_Rep_3 7 513.3272094726562 2 513.325014 1024.63547 NaN NaN NaN NaN NaN NaN NaN 59.884 1 63.401 62.901 63.901 3.5169 0 0 0 0.38299 1 13109 13109 4.756 0 1 34243 6171 21847 21858 39247 39247 0.12414209167150148 QVMLLAECLT 10 Unmodified _QVMLLAECLT_ 0 0 0 REV__ENSG00000177084|ENST00000320574|POLE REV__ENSG00000177084|ENST00000320574|POLE MULTI-MSMS UPN48_class_I_Rep_3 7 560.789794921875 2 560.790678 1119.5668 0.32029 0.00017961 0.29729 0.00016672 0.61757 0.00034633 560.7908834443377 31.224 0.58568 34.925 34.685 35.271 3.7015 113 63 2 0 0 0 0.56078 1 4544 4544 3.2813 0 1 137710 + 34244 20610 21848 21859 39248 39248 0.011801768051100225 QVNFAKVKF 9 Unmodified _QVNFAKVKF_ 0 0 0 ENST00000583822.5_1_17:59949574-59962361:-|nuORF ENST00000583822.5_1_17:59949574-59962361:-|nuORF ENST00000583822.5_1_17:59949574-59962361:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 540.8142700195312 2 540.813659 1079.61277 0.41258 0.00022313 -0.12421 -6.7174E-05 0.28837 0.00015596 540.813760487 49.286 0.63991 53.004 52.655 53.295 3.7175 57 43 2 0 0 0 0.46434 1 9917 9917 4.3292 0 1 97346 34245 7571 21849 21860 39249 39249 0.07614326093880663 QVNHKGKPI 9 Unmodified _QVNHKGKPI_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA5_dup10595|chr18:37111557-37117653:+|1.1049979260825962|0.0445246974299591|4.63|151.0|85|2|sense;L1PA6_dup127|chr1:85921433-85926818:+|1.0872451561309626|0.0098369327813827|6.79|150.0|117|3|sense;L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|121|3|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|121|3|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 510.8025207519531 2 510.801083 1019.58761 NaN NaN NaN NaN NaN NaN NaN 19.144 1 19.144 18.644 19.644 0 0 0 0 0.4007 1 1780 1780 0.52476 0 1 34246 14320;14722 21850 21861 39250 39250 0.07860271291337995 QVNKAGKEFI 10 Unmodified _QVNKAGKEFI_ 0 0 0 REV__L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|30|3|sense REV__L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3184204101562 2 567.319306 1132.62406 0.41218 0.00023384 -0.19113 -0.00010843 0.22105 0.00012541 567.3190481444375 46.123 0.7818 49.642 49.244 50.026 3.5192 67 52 2 0 0 0 0.56118 1 8867 8867 2.9952 0.26005 1 185900 + 34247 25048 21851 21862 39251 39251 0.06305103397380662 QVNLSNMQGQ 10 Unmodified _QVNLSNMQGQ_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MSMS UPN47_class_I_Rep_1 2 559.764892578125 2 559.76658 1117.51861 NaN NaN NaN NaN NaN NaN NaN 25.451 1 29.201 28.701 29.701 3.7495 0 0 0 0.53105 1 3492 3492 5.7319 0 1 34248 5446 21852 21863 39252 39252 -0.0354518079054742 QVPDIISWCA 10 Unmodified _QVPDIISWCA_ 0 0 0 L1PA2_dup4189|chr13:95733700-95740837:-|4.433547310000071|0.1352278297417478|5.03|151.0|356|2|anti-sense L1PA2_dup4189|chr13:95733700-95740837:-|4.433547310000071|0.1352278297417478|5.03|151.0|356|2|anti-sense L1PA2_dup4189|chr13:95733700-95740837:-|4.433547310000071|0.1352278297417478|5.03|151.0|356|2|anti-sense MSMS UPN47_class_I_Rep_2 3 566.280517578125 2 566.278792 1130.54303 NaN NaN NaN NaN NaN NaN NaN 17.442 1 20.829 20.329 21.329 3.387 0 0 0 0.53105 1 1305 1305 1.3295 0.63916 1 34249 14212 21853 21864 39253 39253 -0.01701920637015064 QVPKKMVI 8 Unmodified _QVPKKMVI_ 0 0 0 nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1;ENSG00000138658|ENST00000505019|ZGRF1 nc|ENSG00000138658|Q86YA3-3|ZGRF1 nc|ENSG00000138658|Q86YA3-3|ZGRF1 MSMS UPN47_class_I_Rep_1 2 471.7957458496094 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 24.143 1 27.872 27.372 28.372 3.7298 0 0 0 0.40738 1 3107 3107 0.79363 0 1 34250 3100 21854 21865 39254 39254 0.10008482818830089 QVPKYGQLW 9 Unmodified _QVPKYGQLW_ 0 0 0 REV__Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|25|2|anti-sense REV__Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|25|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.8027954101562 2 559.803291 1117.59203 0.32773 0.00018347 -0.30908 -0.00017302 0.018655 1.0443E-05 559.8030729072086 39.219 0.54041 42.875 42.699 43.239 3.6557 65 47 2 0 0 0 0.46869 1 6781 6781 3.9444 0.66309 1 106600 + 34251 32712 21855 21866 39255 39255 0.03793735714225477 QVPMMVRG 8 Unmodified _QVPMMVRG_ 0 0 0 ENSG00000188585|ENST00000623247|CLEC20A ENSG00000188585|ENST00000623247|CLEC20A ENSG00000188585|ENST00000623247|CLEC20A MSMS UPN47_class_I_Rep_3 4 459.2498779296875 2 459.238415 916.462278 NaN NaN NaN NaN NaN NaN NaN 15.862 1 19.228 18.728 19.728 3.3659 0 0 0 0.4044 1 895 895 4.756 0 1 34252 5240 21856 21867 39256 39256 0.0007051983909605042 QVPVTYVFY 9 Unmodified _QVPVTYVFY_ 0 0 0 REV__LTR19-int_dup22|chr3:119987334-119989361:+|1.5538995887128544|0.0151254828204559|6.68|150.0|11|1|sense REV__LTR19-int_dup22|chr3:119987334-119989361:+|1.5538995887128544|0.0151254828204559|6.68|150.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2827758789062 2 558.292225 1114.5699 0.44665 0.00024936 -0.045417 -2.5356E-05 0.40123 0.00022401 558.2920977973986 70.945 1.0957 74.156 73.715 74.81 3.2113 234 94 3 0 0 0 0.21527 1 17577 17577 19.257 0 1 458270 + 34253 30866 21857 21868 39257 39257 0.017195112458011863 QVPVTYVFY 9 Unmodified _QVPVTYVFY_ 0 0 0 REV__LTR19-int_dup22|chr3:119987334-119989361:+|1.5538995887128544|0.0151254828204559|6.68|150.0|11|1|sense REV__LTR19-int_dup22|chr3:119987334-119989361:+|1.5538995887128544|0.0151254828204559|6.68|150.0|11|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 558.292225 1114.5699 0.4675 0.000261 0.90109 0.00050307 1.3686 0.00076407 558.2933331165374 70.764 0.049614 74.283 74.25 74.3 3.5185 0.1472 0.0010989 NaN 19.257 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 39958 + 34254 30866 21857 21868 0.017195112458011863 QVPYRGLP 8 Unmodified _QVPYRGLP_ 0 0 0 REV__L1PB1_dup2009|chr3:25770450-25772221:-|1.231352919115593|0.0266550108357506|5.53|151.0|83|2|anti-sense REV__L1PB1_dup2009|chr3:25770450-25772221:-|1.231352919115593|0.0266550108357506|5.53|151.0|83|2|anti-sense MSMS UPN46_class_I_Rep_3 1 465.2550354003906 2 465.263802 928.513051 NaN NaN NaN NaN NaN NaN NaN 37.433 1 37.433 36.933 37.933 0 0 0 0 0.39819 1 7039 7039 8.5933 2.8329 1 + 34255 30364 21858 21869 39258 39258 0.04593508479945285 QVQWLTPVI 9 Unmodified _QVQWLTPVI_ 0 0 0 AluJr_dup42115|chr9:131411815-131412106:-|1.209688259789814|0.0171444383084085|6.14|151.0|1|1|sense;FLAM_C_dup19827|chr17:4441242-4441374:+|1.022006623338764|0.0003308310375458|11.59|144.0|6|3|sense;AluSx1_dup1218|chr1:17411295-17411600:+|1.5828322934238226|0.3724027538340919|2.09|151.0|1|1|sense;AluJb_dup123771|chr22:17765926-17766223:-|1.1697272374619554|0.0054578181659548|7.74|151.0|1|1|sense;AluSx_dup107152|chr19:35888765-35889061:+|1.0822548956932798|0.1668054749609357|2.7|151.0|10|3|sense;AluSz6_dup20196|chr7:148822228-148822521:+|1.0598824975008363|0.1120792205496266|3.24|151.0|1|1|sense;AluSz_dup36668|chr7:5406183-5406470:+|1.214769203808401|0.0037108176443619|8.35|149.0|1|1|sense;AluSx1_dup99773|chr17:75378104-75378402:+|1.4168527710277987|0.0051909642101374|8.09|151.0|1|1|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|1|1|sense;AluSg4_dup5521|chr16:536427-536723:-|1.0820228552531814|0.2267909433982159|2.25|151.0|1|1|sense;AluSq_dup17146|chr19:16097264-16097573:-|1.6506026810049854|0.2812869771105429|2.55|151.0|1|1|sense;AluSz6_dup1293|chr1:44533983-44534279:-|1.4518495678773926|0.0008752999532271|10.7|150.0|1|1|sense;AluSz_dup72109|chr13:50113139-50113447:-|1.25231940845851|0.0310283507331579|5.33|151.0|1|1|sense;AluSx_dup54792|chr9:77840348-77840635:-|1.2689583846854762|0.0100158790614073|6.99|151.0|8|3|sense;AluJr4_dup19859|chr22:20759044-20759343:-|1.3348464510809412|0.3414751179910067|1.97|151.0|1|1|sense;AluJb_dup40245|chr6:2294589-2294909:+|1.052068277035559|0.0112279956121626|6.55|151.0|4|2|sense;AluSp_dup20036|chr7:75379385-75379694:+|1.5445858854743746|0.1190547075749236|3.7|151.0|1|1|sense;AluSx_dup95058|chr17:1387644-1387924:-|1.624009710700227|0.0507856414353808|5.0|151.0|9|3|sense;AluJr_dup11391|chr2:177255561-177255860:-|1.1344363006149338|0.0868973796527014|3.71|151.0|1|1|sense;AluSz6_dup33752|chr13:28021108-28021405:+|2.203993199376576|0.0091791826425654|7.91|151.0|1|1|sense;AluJo_dup17631|chr4:70830146-70830462:+|1.1762635312578065|0.2113795815732717|2.48|151.0|1|1|sense;AluSz_dup77436|chr15:44540439-44540740:-|1.0034043754501367|0.0482158311000407|4.38|151.0|3|1|sense;AluSg_dup23334|chr11:117058240-117058536:+|1.3720431402463926|0.0079842189893507|7.42|151.0|1|1|sense;ENSG00000197847.12,SLC22A20P,chr11,+,I10.1,65236889,65238661|40|5.24|2|intron AluJr_dup42115|chr9:131411815-131412106:-|1.209688259789814|0.0171444383084085|6.14|151.0|1|1|sense AluJr_dup42115|chr9:131411815-131412106:-|1.209688259789814|0.0171444383084085|6.14|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.3134765625 2 542.313492 1082.61243 0.41553 0.00022535 0.41052 0.00022263 0.82605 0.00044798 542.3136333269168 64.334 0.57506 67.508 67.195 67.77 3.1741 74 39 3 0 0 0 0.43153 1 15340 15340 6.2058 0.47393 1 204980 34256 32 21859 21870 39259 39259 0.07442906374035374 QVQYRMHPA 9 Unmodified _QVQYRMHPA_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS UPN48_class_I_Rep_3 7 565.2847290039062 2 565.2822 1128.54985 NaN NaN NaN NaN NaN NaN NaN 91.881 1 95.745 95.245 96.245 3.8634 0 0 0 0.38478 1 21792 21792 4.3292 0 1 34257 691 21860 21871 39260 39260 -0.009285629657824757 QVRASRLL 8 Unmodified _QVRASRLL_ 0 0 0 L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|242|1|anti-sense L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|242|1|anti-sense L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|242|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79583740234375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 60.902 1 64.284 63.784 64.784 3.3815 0 0 0 0.40581 1 14243 14243 2.8892 0 1 34258 14330 21861 21872 39261 39261 0.10392288636899139 QVRFLYLS 8 Unmodified _QVRFLYLS_ 0 0 0 REV__nc|ENSG00000144724|P23470-2|PTPRG REV__nc|ENSG00000144724|P23470-2|PTPRG MSMS UPN48_class_I_Rep_2 6 513.2906494140625 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 76.978 1 80.59 80.09 81.09 3.6116 0 0 0 0.40625 1 18195 18195 2.3027 0 1 + 34259 19492 21862 21873 39262 39262 0.059263506854904335 QVRFLYLS 8 Unmodified _QVRFLYLS_ 0 0 0 REV__nc|ENSG00000144724|P23470-2|PTPRG REV__nc|ENSG00000144724|P23470-2|PTPRG MSMS UPN48_class_I_Rep_3 7 513.2903442382812 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 76.847 1 80.449 79.949 80.949 3.6016 0 0 0 0.40625 1 18116 18116 2.3027 0 1 + 34260 19492 21862 21873 39263 39263 0.059263506854904335 QVRLTEIYN 9 Unmodified _QVRLTEIYN_ 0 0 0 REV__ENST00000564150.1_1_16:58147931-58149427:-|nuORF REV__ENST00000564150.1_1_16:58147931-58149427:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 568.3099365234375 2 568.308938 1134.60332 0.45866 0.00026066 -0.088619 -5.0363E-05 0.37004 0.0002103 568.3088348630247 50.438 0.63786 54.132 53.777 54.414 3.6946 70 39 2 0 0 0 0.41259 1 10372 10372 7.2892 0 1 210560 + 34261 17804 21863 21874 39264 39264 0.04140513017682679 QVRVLRAA 8 Unmodified _QVRVLRAA_ 0 0 0 L1M2a_dup256|chr10:21787454-21789728:+|1.552565852808412|0.0196376641798874|6.3|150.0|96|2|anti-sense L1M2a_dup256|chr10:21787454-21789728:+|1.552565852808412|0.0196376641798874|6.3|150.0|96|2|anti-sense L1M2a_dup256|chr10:21787454-21789728:+|1.552565852808412|0.0196376641798874|6.3|150.0|96|2|anti-sense MSMS UPN47_class_I_Rep_1 2 456.7888488769531 2 456.790518 911.566484 NaN NaN NaN NaN NaN NaN NaN 23.61 1 27.34 26.84 27.84 3.7298 0 0 0 0.40738 1 2948 2948 0.79363 0 1 34262 8731 21864 21875 39265 39265 0.10716305982441554 QVSKNISFLI 10 Unmodified _QVSKNISFLI_ 0 0 0 ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L ENST00000473744.5_1_14:23235910-23239613:+|nuORF ENST00000473744.5_1_14:23235910-23239613:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 574.8380126953125 2 574.837331 1147.66011 0.50945 0.00029285 -0.032936 -1.8933E-05 0.47651 0.00027392 574.8371331031092 65.376 0.32593 68.855 68.697 69.023 3.4792 30 24 2 0 0 0 0.53004 1 14853 14853 8.1555 0 1 66180 34263 6942 21865 21876 39266 39266 0.09218560574208823 QVSKNISFLI 10 Unmodified _QVSKNISFLI_ 0 0 0 ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L ENST00000473744.5_1_14:23235910-23239613:+|nuORF ENST00000473744.5_1_14:23235910-23239613:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 574.837331 1147.66011 0.49817 0.00028637 -0.13179 -7.5757E-05 0.36638 0.00021061 574.8370503822944 65.631 0.22086 69.083 69.023 69.244 3.4516 0.15532 2.2843E-05 NaN 8.1555 16 14 2 NaN NaN NaN NaN 0 NaN NaN 0 71332 34264 6942 21865 21876 0.09218560574208823 QVSKNISFLI 10 Unmodified _QVSKNISFLI_ 0 0 0 ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L ENST00000473744.5_1_14:23235910-23239613:+|nuORF ENST00000473744.5_1_14:23235910-23239613:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 574.837331 1147.66011 0.50914 0.00029267 -0.58984 -0.00033906 -0.080703 -4.6391E-05 574.8368176377161 65.337 0.17434 68.844 68.751 68.926 3.5077 -0.082858 -0.00050377 NaN 8.1555 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 57129 34265 6942 21865 21876 0.09218560574208823 QVSRRWYL 8 Unmodified _QVSRRWYL_ 0 0 0 ENST00000316610.6_1_5:89769768-89770494:-|nuORF ENST00000316610.6_1_5:89769768-89770494:-|nuORF ENST00000316610.6_1_5:89769768-89770494:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 554.3057250976562 2 554.306532 1106.59851 0.37991 0.00021058 -2.0826 -0.0011544 -1.7027 -0.00094383 554.3056751732844 69.898 0.063278 73.266 73.214 73.277 3.3678 9 6 2 0 0 0 0.82752 2 16956 16956;16960 7.2892 1.5574 1 51478 34266 6137 21866 21877 39267;39268 39267 0.04947673665606089 QVSRRWYL 8 Unmodified _QVSRRWYL_ 0 0 0 ENST00000316610.6_1_5:89769768-89770494:-|nuORF ENST00000316610.6_1_5:89769768-89770494:-|nuORF ENST00000316610.6_1_5:89769768-89770494:-|nuORF MSMS UPN47_class_I_Rep_2 3 554.3057861328125 2 554.306532 1106.59851 NaN NaN NaN NaN NaN NaN NaN 70.316 1 73.599 73.099 74.099 3.2828 0 0 0 0.40157 1 17126 17126 7.2892 1.5574 1 34267 6137 21866 21877 39269 39269 0.04947673665606089 QVTAPLFHL 9 Unmodified _QVTAPLFHL_ 0 0 0 ENST00000480308.5_1_1:161646774-161647023:+|nuORF ENST00000480308.5_1_1:161646774-161647023:+|nuORF ENST00000480308.5_1_1:161646774-161647023:+|nuORF MSMS UPN48_class_I_Rep_3 7 513.2907104492188 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 76.989 1 80.591 80.091 81.091 3.6016 0 0 0 0.39598 1 18158 18158 1.6526 0 1 34268 6993 21867 21878 39270 39270 0.059263506854904335 QVTKKAPLCLD 11 Unmodified _QVTKKAPLCLD_ 0 0 0 nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1;nc|ENSG00000197177|Q86SQ6-1|ADGRA1 nc|ENSG00000197177|Q86SQ6-2|ADGRA1 nc|ENSG00000197177|Q86SQ6-2|ADGRA1 MSMS UPN48_class_I_Rep_2 6 405.884033203125 3 405.897041 1214.66929 NaN NaN NaN NaN NaN NaN NaN 64.824 1 68.303 67.803 68.803 3.4792 0 0 0 0.38417 1 14687 14687 1.1098 0.038292 1 34269 5354 21868 21879 39271 39271 0.07054585868218055 QVTKSTQNSF 10 Unmodified _QVTKSTQNSF_ 0 0 0 ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL MULTI-MSMS UPN46_class_I_Rep_3 1 570.2880859375 2 570.288202 1138.56185 0.14412 8.2188E-05 -0.065332 -3.7258E-05 0.078785 4.493E-05 570.2881183078819 26.803 0.81432 26.803 26.556 27.37 0 133 64 3 0 0 0 0.23322 2 3910 3910;3950 40.239 17.503 1 195400 34270 683 21869 21880 39272;39273 39272 -0.0018866774159960187 QVTQLNTGY 9 Unmodified _QVTQLNTGY_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS UPN47_class_I_Rep_1 2 512.2587280273438 2 512.258914 1022.50327 -0.19867 -0.00010177 0.3367 0.00017248 0.13803 7.0707E-05 512.2590401195113 30.297 0.52283 34.042 33.795 34.318 3.7449 67 38 2 0 0 0 0.23293 3 4943 4903;4943;4985 18.146 0 1 80124 + 34271 17793 21870 21881 39274;39275;39276 39275 -0.0070772431608929764 QVTQLNTGY 9 Unmodified _QVTQLNTGY_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS UPN47_class_I_Rep_2 3 512.2594604492188 2 512.258914 1022.50327 -0.27897 -0.00014291 0.25408 0.00013015 -0.024893 -1.2751E-05 512.2590002772331 30.504 0.5021 33.987 33.716 34.218 3.4821 66 39 2 0 0 0 0.16559 3 5025 4986;5025;5105 24.021 0 1 88507 + 34272 17793 21870 21881 39277;39278;39279 39278 -0.0070772431608929764 QVTQLNTGY 9 Unmodified _QVTQLNTGY_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS UPN47_class_I_Rep_3 4 512.759765625 2 512.258914 1022.50327 -0.34846 -0.0001785 0.32992 0.000169 -0.018546 -9.5006E-06 512.2592911517169 30.624 0.58996 33.935 33.734 34.324 3.3116 62 47 2 0 0 0 0.23293 2 5084 5084;5208 18.146 0 1 95387 + 34273 17793 21870 21881 39280;39281 39280 -0.0070772431608929764 QVTQLPIRI 9 Unmodified _QVTQLPIRI_ 0 0 0 REV__L1MD1_dup1214|chr3:58364724-58365792:-|1.3948510195069|0.026449218938212|5.72|150.0|39|3|sense REV__L1MD1_dup1214|chr3:58364724-58365792:-|1.3948510195069|0.026449218938212|5.72|150.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 534.3324584960938 2 534.332216 1066.64988 0.46579 0.00024889 -0.53545 -0.00028611 -0.069657 -3.722E-05 534.331694286454 57.663 0.27445 61.195 61.112 61.386 3.5317 33 19 2 0 0 0 0.10568 1 12429 12429 32.786 1.5173 1 753180 + 34274 27293 21871 21882 39282 39282 0.11921997639660731 QVTYRMGEH 9 Unmodified _QVTYRMGEH_ 0 0 0 L1PA6_dup1893|chr5:34135572-34137159:+|1.0893746535912394|0.0246218776068142|5.47|150.0|43|3|sense L1PA6_dup1893|chr5:34135572-34137159:+|1.0893746535912394|0.0246218776068142|5.47|150.0|43|3|sense L1PA6_dup1893|chr5:34135572-34137159:+|1.0893746535912394|0.0246218776068142|5.47|150.0|43|3|sense MSMS UPN48_class_I_Rep_3 7 560.765625 2 560.76384 1119.51313 NaN NaN NaN NaN NaN NaN NaN 39.031 1 42.687 42.187 43.187 3.6557 0 0 0 0.38639 1 6777 6777 3.9444 0.66309 1 34275 14573 21872 21883 39283 39283 -0.04184859582369427 QVVCLVPSL 9 Unmodified _QVVCLVPSL_ 0 0 0 REV__L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|16|1|anti-sense REV__L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 479.27801513671875 2 479.275521 956.536489 NaN NaN NaN NaN NaN NaN NaN 80.93 1 80.93 80.43 81.43 0 0 0 0 0.38639 1 19089 19089 3.9444 0 1 + 34276 28492 21873 21884 39284 39284 0.05648186202256511 QVVDLRSFF 9 Unmodified _QVVDLRSFF_ 0 0 0 L1MEc_dup9938|chr9:37166402-37166997:-|1.555163844785317|0.0709054277104141|4.46|151.0|37|3|anti-sense L1MEc_dup9938|chr9:37166402-37166997:-|1.555163844785317|0.0709054277104141|4.46|151.0|37|3|anti-sense L1MEc_dup9938|chr9:37166402-37166997:-|1.555163844785317|0.0709054277104141|4.46|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.8005981445312 2 555.800749 1109.58694 NaN NaN NaN NaN NaN NaN NaN 41.91 1 45.589 45.089 46.089 3.6792 0 0 0 0.39518 1 8465 8465 1.8442 0 1 34277 13157 21874 21885 39285 39285 0.03653431851603273 QVVHPPRP 8 Unmodified _QVVHPPRP_ 0 0 0 AluSz_dup94031|chr19:18278412-18278698:+|6.321740360383414|0.0983907252720817|6.01|151.0|16|2|anti-sense AluSz_dup94031|chr19:18278412-18278698:+|6.321740360383414|0.0983907252720817|6.01|151.0|16|2|anti-sense AluSz_dup94031|chr19:18278412-18278698:+|6.321740360383414|0.0983907252720817|6.01|151.0|16|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 465.2704772949219 2 465.269419 928.524284 0.19379 9.0164E-05 -0.56113 -0.00026108 -0.36735 -0.00017091 465.27031401188475 99.479 0.15733 103.24 103.12 103.28 3.7575 56 20 4 0 0 0 0.72333 1 23612 23612 2.5775 0 1 1251000 34278 372 21875 21886 39286 39286 0.05716330574080075 QVVHPPRP 8 Unmodified _QVVHPPRP_ 0 0 0 AluSz_dup94031|chr19:18278412-18278698:+|6.321740360383414|0.0983907252720817|6.01|151.0|16|2|anti-sense AluSz_dup94031|chr19:18278412-18278698:+|6.321740360383414|0.0983907252720817|6.01|151.0|16|2|anti-sense AluSz_dup94031|chr19:18278412-18278698:+|6.321740360383414|0.0983907252720817|6.01|151.0|16|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 465.269419 928.524284 0.19945 9.28E-05 2.0486 0.00095315 2.248 0.0010459 465.2702750230101 99.969 0.38028 103.47 103.33 103.71 3.4974 -0.028041 2.4922E-05 NaN 2.5775 81 50 2 NaN NaN NaN NaN 0 NaN NaN 0 866700 34279 372 21875 21886 0.05716330574080075 QVVKYLTLE 9 Unmodified _QVVKYLTLE_ 0 0 0 REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|151|3|anti-sense REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|151|3|anti-sense MSMS UPN47_class_I_Rep_1 2 546.8006591796875 2 546.818607 1091.62266 NaN NaN NaN NaN NaN NaN NaN 64.615 1 67.97 67.47 68.47 3.3557 0 0 0 0.11494 1 15361 15361 21.747 4.8044 1 + 34280 27879 21876 21887 39287 39287 0.08051469308611559 QVVLKCLGK 9 Unmodified _QVVLKCLGK_ 0 0 0 REV__ENST00000283172.8_1_12:65088777-65089044:+|nuORF REV__ENST00000283172.8_1_12:65088777-65089044:+|nuORF MSMS UPN46_class_I_Rep_3 1 494.30352783203125 2 494.304613 986.594672 NaN NaN NaN NaN NaN NaN NaN 107.66 1 107.66 107.16 108.16 0 0 0 0 0.36505 1 26263 26263 7.2892 0.56607 1 + 34281 21632 21877 21888 39288 39288 0.10083867847538386 QVVRLTWW 8 Unmodified _QVVRLTWW_ 0 0 0 nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MSMS UPN46_class_I_Rep_3 1 544.3058471679688 2 544.306001 1086.59745 NaN NaN NaN NaN NaN NaN NaN 12.443 1 12.443 11.943 12.943 0 0 0 0 0.40746 1 115 115 0.69038 0 1 34282 3162 21878 21889 39289 39289 0.057614592966729106 QVVRYQEKW 9 Unmodified _QVVRYQEKW_ 0 0 0 REV__nc|ENSG00000082805|Q8IUD2-5|ERC1 REV__nc|ENSG00000082805|Q8IUD2-5|ERC1 MSMS UPN48_class_I_Rep_1 5 618.3325805664062 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 37.153 1 40.66 40.16 41.16 3.507 0 0 0 0.38478 1 6286 6286 4.3292 0.73274 1 + 34283 17925 21879 21890 39290 39290 0.037919081459449444 QVVSIAANR 9 Unmodified _QVVSIAANR_ 0 0 0 L1PA16_dup4577|chr5:81649370-81649792:+|1.003897106744532|0.0040142200640992|7.97|151.0|20|1|anti-sense;L1PA16_dup12154|chr15:49223379-49224794:-|1.0595393600693894|0.0614282185731621|4.11|150.0|48|1|anti-sense L1PA16_dup4577|chr5:81649370-81649792:+|1.003897106744532|0.0040142200640992|7.97|151.0|20|1|anti-sense L1PA16_dup4577|chr5:81649370-81649792:+|1.003897106744532|0.0040142200640992|7.97|151.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2774963378906 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.47197 1 18416 18416 3.5965 0.31518 1 595600 34284 14039 21880 21891 39291 39291 0.06031992020314192 QVVTHARLAAP 11 Unmodified _QVVTHARLAAP_ 0 0 0 REV__ENSG00000126243|ENST00000246529|LRFN3 REV__ENSG00000126243|ENST00000246529|LRFN3 MSMS UPN48_class_I_Rep_3 7 581.8396606445312 2 581.838197 1161.66184 NaN NaN NaN NaN NaN NaN NaN 108.94 1 112.62 112.12 113.12 3.6751 0 0 0 0.38417 1 25845 25845 5.2969 1.3525 1 + 34285 18859 21881 21892 39292 39292 0.0874761438283258 QVVVVKEE 8 Unmodified _QVVVVKEE_ 0 0 0 nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA nc|ENSG00000100084|P54198-2|HIRA nc|ENSG00000100084|P54198-2|HIRA MULTI-MSMS UPN48_class_I_Rep_2 6 465.27032470703125 2 465.26875 928.522947 0.19382 9.0178E-05 0.87392 0.00040661 1.0677 0.00049679 465.27031620244236 99.623 0.31702 103.38 103.28 103.59 3.7575 124 39 4 0 0 0 0.82752 1 23642 23642 5.2307 2.6532 1 1162900 34286 1472 21882 21893 39293 39293 0.05582651694658125 QVVVYIMLIT 10 Unmodified _QVVVYIMLIT_ 0 0 0 L1MC5_dup4641|chr5:119281308-119282060:-|1.1791723017437803|0.0095478805344528|6.95|151.0|43|2|anti-sense L1MC5_dup4641|chr5:119281308-119282060:-|1.1791723017437803|0.0095478805344528|6.95|151.0|43|2|anti-sense L1MC5_dup4641|chr5:119281308-119282060:-|1.1791723017437803|0.0095478805344528|6.95|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.8448486328125 2 589.84631 1177.67807 NaN NaN NaN NaN NaN NaN NaN 87.157 1 90.598 90.098 91.098 3.4407 0 0 0 0.53105 1 21667 21667 1.4819 0 1 34287 11682 21883 21894 39294 39294 0.0963355950470941 QVVYGHQF 8 Unmodified _QVVYGHQF_ 0 0 0 ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|6|intron;ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|9|intron;ENSG00000146263|ENST00000683635|MMS22L;ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|6|intron ENSG00000146263.11,MMS22L,chr6,-,I19.1,97168241,97173062|28|5.51|6|intron MSMS UPN47_class_I_Rep_3 4 489.2560119628906 2 489.245609 976.476666 NaN NaN NaN NaN NaN NaN NaN 56.302 1 59.474 58.974 59.974 3.1721 0 0 0 0.40364 1 12932 12932 5.7604 0 1 34288 3431 21884 21895 39295 39295 -0.012513684167629435 QVWEDCSR 8 Unmodified _QVWEDCSR_ 0 0 0 ENST00000409891.5_1_2:175439955-175446055:-|nuORF ENST00000409891.5_1_2:175439955-175446055:-|nuORF ENST00000409891.5_1_2:175439955-175446055:-|nuORF MSMS UPN47_class_I_Rep_1 2 511.749755859375 2 511.721641 1021.42873 NaN NaN NaN NaN NaN NaN NaN 30.182 1 33.927 33.427 34.427 3.7449 0 0 0 0.4044 1 4900 4900 4.756 0 1 34289 6628 21885 21896 39296 39296 -0.08112810399120463 QVWLHLRC 8 Unmodified _QVWLHLRC_ 0 0 0 REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 527.7859497070312 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 25.165 1 28.915 28.415 29.415 3.7495 0 0 0 0.40625 1 3409 3409 2.3027 0 1 + 34290 29765 21886 21897 39297 39297 0.029569462477866182 QVWLHLRC 8 Unmodified _QVWLHLRC_ 0 0 0 REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 527.786865234375 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 25.068 1 28.551 28.051 29.051 3.483 0 0 0 0.4044 1 3426 3426 4.756 0 1 + 34291 29765 21886 21897 39298 39298 0.029569462477866182 QVWLHLRC 8 Unmodified _QVWLHLRC_ 0 0 0 REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 527.7853393554688 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 25.182 1 28.665 28.165 29.165 3.483 0 0 0 0.4044 1 3459 3459 4.756 0.42677 1 + 34292 29765 21886 21897 39299 39299 0.029569462477866182 QVWLHLRC 8 Unmodified _QVWLHLRC_ 0 0 0 REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 527.7852783203125 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 25.035 1 28.386 27.886 28.886 3.3509 0 0 0 0.40404 1 3454 3454 5.2307 0 1 + 34293 29765 21886 21897 39300 39300 0.029569462477866182 QVWLHLRC 8 Unmodified _QVWLHLRC_ 0 0 0 REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense REV__L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 527.7840576171875 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 25.204 1 28.555 28.055 29.055 3.3509 0 0 0 0.40625 1 3506 3506 2.3027 0 1 + 34294 29765 21886 21897 39301 39301 0.029569462477866182 QVWNLPLVISC 11 Unmodified _QVWNLPLVISC_ 0 0 0 Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|16|1|anti-sense Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|16|1|anti-sense Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_1 2 636.3573608398438 2 636.344466 1270.67438 NaN NaN NaN NaN NaN NaN NaN 65.94 1 69.298 68.798 69.798 3.3576 0 0 0 0.38417 1 15762 15762 2.7352 1.2533 1 34295 33440 21887 21898 39302 39302 0.04986889730867006 QVWNLPLVISC 11 Unmodified _QVWNLPLVISC_ 0 0 0 Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|16|1|anti-sense Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|16|1|anti-sense Tigger4b_dup770|chr5:32159177-32159481:-|1.8051292489733968|0.0310249479133184|5.86|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 636.3587036132812 2 636.344466 1270.67438 NaN NaN NaN NaN NaN NaN NaN 66.403 1 69.662 69.162 70.162 3.2588 0 0 0 0.38417 1 15951 15951 2.7352 0.89096 1 34296 33440 21887 21898 39303 39303 0.04986889730867006 QVWWCVPI 8 Unmodified _QVWWCVPI_ 0 0 0 AluJb_dup113824|chr19:2078761-2079048:-|1.4135401874605078|0.1859811349002213|2.93|151.0|12|3|sense;AluJb_dup40086|chr5:179987160-179987468:-|1.0765126357785202|0.0263935683043557|5.35|151.0|7|2|sense;AluJo_dup17044|chr4:39724114-39724404:-|1.2818363225721354|0.0057131542083309|7.81|151.0|1|1|sense AluJb_dup113824|chr19:2078761-2079048:-|1.4135401874605078|0.1859811349002213|2.93|151.0|12|3|sense AluJb_dup113824|chr19:2078761-2079048:-|1.4135401874605078|0.1859811349002213|2.93|151.0|12|3|sense MSMS UPN47_class_I_Rep_1 2 515.7615966796875 2 515.762581 1029.51061 NaN NaN NaN NaN NaN NaN NaN 25.528 1 29.278 28.778 29.778 3.7495 0 0 0 0.40604 1 3516 3516 2.5775 0 1 34297 19 21888 21899 39304 39304 -0.0029666324937807076 QVYHLFKKN 9 Unmodified _QVYHLFKKN_ 0 0 0 REV__L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|47|3|sense REV__L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|47|3|sense MSMS UPN48_class_I_Rep_3 7 588.8300170898438 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 46.42 1 50.056 49.556 50.556 3.6363 0 0 0 0.38784 1 9000 9000 3.5965 0 1 + 34298 28438 21889 21900 39305 39305 0.0643311349688247 QWAIRIMPA 9 Unmodified _QWAIRIMPA_ 0 0 0 HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|13|1|sense HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|13|1|sense HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 543.30126953125 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 67.145 1 70.336 69.836 70.836 3.1914 0 0 0 0.38478 1 16240 16240 4.3292 0 1 34299 8057 21890 21901 39306 39306 0.046260995620059475 QWAKTGSIHF 10 Unmodified _QWAKTGSIHF_ 0 0 0 L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|105|2|sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|105|2|sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|105|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.802978515625 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.54466 1 8275 8275 6.2058 0.47393 1 966840 34300 14220 21891 21902 39307 39307 0.013239500831332407 QWDWLLIRR 9 Unmodified _QWDWLLIRR_ 0 0 0 MLT1B_dup10183|chrX:2388234-2388650:+|1.7723681826056998|0.0148033510574155|6.9|151.0|3|1|sense MLT1B_dup10183|chrX:2388234-2388650:+|1.7723681826056998|0.0148033510574155|6.9|151.0|3|1|sense MLT1B_dup10183|chrX:2388234-2388650:+|1.7723681826056998|0.0148033510574155|6.9|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 643.3617553710938 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 59.379 1 59.379 58.879 59.879 0 0 0 0 0.39518 1 13122 13122 1.8442 0.36234 1 34301 16270 21892 21903 39308 39308 0.07815893653810235 QWEDRSFD 8 Unmodified _QWEDRSFD_ 0 0 0 REV__ENSG00000127081|ENST00000375495|ZNF484 REV__ENSG00000127081|ENST00000375495|ZNF484 MSMS UPN47_class_I_Rep_2 3 541.7300415039062 2 541.73052 1081.44649 NaN NaN NaN NaN NaN NaN NaN 19.622 1 23.018 22.518 23.518 3.3963 0 0 0 0.40659 1 1885 1885 1.8442 0 1 + 34302 18870 21893 21904 39309 39309 -0.09097771872620797 QWEQPHIALQ 10 Unmodified _QWEQPHIALQ_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS UPN48_class_I_Rep_2 6 625.3204956054688 2 625.319837 1248.62512 NaN NaN NaN NaN NaN NaN NaN 57.535 1 61.049 60.549 61.549 3.5142 0 0 0 0.53105 1 12452 12452 8.1555 0.54658 1 34303 6122 21894 21905 39310 39310 0.010753177662763846 QWEQPHIALQ 10 Unmodified _QWEQPHIALQ_ 0 0 0 ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF ENST00000314117.8_1_4:37650968-37687967:-|nuORF MSMS UPN48_class_I_Rep_2 6 625.3201904296875 2 625.319837 1248.62512 NaN NaN NaN NaN NaN NaN NaN 57.703 1 61.217 60.717 61.717 3.5142 0 0 0 0.53105 1 12502 12502 8.1555 0 1 34304 6122 21894 21905 39311 39311 0.010753177662763846 QWHLQKPR 8 Unmodified _QWHLQKPR_ 0 0 0 REV__L1MEd_dup3565|chr2:241757983-241758479:-|1.0290215196440593|0.3549954519770914|1.54|151.0|2|1|sense REV__L1MEd_dup3565|chr2:241757983-241758479:-|1.0290215196440593|0.3549954519770914|1.54|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 546.8418579101562 2 546.8067 1091.59885 NaN NaN NaN NaN NaN NaN NaN 96.842 1 96.842 96.342 97.342 0 0 0 0 0.40746 1 23555 23555 0.69038 0 1 + 34305 28574 21895 21906 39312 39312 0.056710933854674295 QWIPETLY 8 Unmodified _QWIPETLY_ 0 0 0 MER44C_dup850|chr22:41099356-41099945:-|1.5053177031442582|0.0195995653192247|6.26|151.0|31|2|anti-sense MER44C_dup850|chr22:41099356-41099945:-|1.5053177031442582|0.0195995653192247|6.26|151.0|31|2|anti-sense MER44C_dup850|chr22:41099356-41099945:-|1.5053177031442582|0.0195995653192247|6.26|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.2716064453125 2 525.26875 1048.52295 NaN NaN NaN NaN NaN NaN NaN 59.338 1 62.503 62.003 63.003 3.1651 0 0 0 0.40625 1 13856 13856 2.3027 0.24298 1 34306 15992 21896 21907 39313 39313 0.0006265169467951637 QWKPKTTII 9 Unmodified _QWKPKTTII_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|27|3|sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|27|3|sense MSMS UPN47_class_I_Rep_3 4 557.8324584960938 2 557.834591 1113.65463 NaN NaN NaN NaN NaN NaN NaN 55.128 1 58.306 57.806 58.806 3.1779 0 0 0 0.39518 1 12573 12573 1.8442 1.1539 1 + 34307 23283 21897 21908 39314 39314 0.10234881782434968 QWKVLNEID 9 Unmodified _QWKVLNEID_ 0 0 0 nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF nc|ENSG00000114268|Q16877-2|PFKFB4 nc|ENSG00000114268|Q16877-2|PFKFB4 MSMS UPN47_class_I_Rep_3 4 573.28564453125 2 572.803488 1143.59242 NaN NaN NaN NaN NaN NaN NaN 62.119 1 65.286 64.786 65.786 3.1667 0 0 0 0.38916 1 14704 14704 3.2813 0.28607 1 34308 2071 21898 21909 39315 39315 0.02637110643422602 QWLATKRRD 9 Unmodified _QWLATKRRD_ 0 0 0 REV__LTR5B_dup142|chr6:75704079-75705095:-|1.3465578645191816|0.0868148815996423|3.96|151.0|19|2|sense REV__LTR5B_dup142|chr6:75704079-75705095:-|1.3465578645191816|0.0868148815996423|3.96|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 587.3280029296875 2 587.327996 1172.64144 NaN NaN NaN NaN NaN NaN NaN 70.238 1 70.238 69.738 70.738 0 0 0 0 0.39428 1 16131 16131 2.0598 0 1 + 34309 30979 21899 21910 39316 39316 0.0620244372300931 QWLEVEQF 8 Unmodified _QWLEVEQF_ 0 0 0 ENSG00000173212|ENST00000369500|MAB21L3 ENSG00000173212|ENST00000369500|MAB21L3 ENSG00000173212|ENST00000369500|MAB21L3 MULTI-MSMS UPN46_class_I_Rep_3 1 539.7646484375 2 539.763832 1077.51311 0.29359 0.00015847 0.29912 0.00016145 0.59271 0.00031992 539.7638969591377 63.19 0.46116 63.19 62.872 63.333 0 64 48 2 0 0 0 0.82752 1 14159 14159 26.884 2.2098 1 222380 34310 4617 21900 21911 39317 39317 -0.022545363107155936 QWLIKWIF 8 Unmodified _QWLIKWIF_ 0 0 0 REV__L1MB8_dup10727|chr11:3989884-3990804:-|1.02189231345965|0.007502683660464|7.09|150.0|19|2|sense REV__L1MB8_dup10727|chr11:3989884-3990804:-|1.02189231345965|0.007502683660464|7.09|150.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 567.3292846679688 2 567.328945 1132.64334 NaN NaN NaN NaN NaN NaN NaN 89.008 1 89.008 88.508 89.508 0 0 0 0 0.40604 1 21398 21398 2.5775 1.0956 1 + 34311 26338 21901 21912 39318 39318 0.08232104478906876 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN46_class_I_Rep_3 1 604.7747802734375 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 22.22 1 22.22 21.72 22.72 0 0 0 0 0.40746 1 2605 2605 0.69038 0.088878 1 + 34312 21456 21902 21913 39319 39319 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN47_class_I_Rep_2 3 604.7868041992188 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 24.738 1 28.221 27.721 28.721 3.483 0 0 0 0.40746 1 3328 3328 0.69038 0.088878 1 + 34313 21456 21902 21913 39320 39320 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN48_class_I_Rep_1 5 604.7748413085938 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 21.742 1 25.296 24.796 25.796 3.5533 0 0 0 0.40746 1 2030 2030 0.69038 0 1 + 34314 21456 21902 21913 39321 39321 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN48_class_I_Rep_1 5 604.77294921875 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 22.274 1 25.827 25.327 26.327 3.5533 0 0 0 0.40746 1 2152 2152 0.69038 0.088878 1 + 34315 21456 21902 21913 39322 39322 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN48_class_I_Rep_1 5 604.7745971679688 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 24.96 1 28.527 28.027 29.027 3.5667 0 0 0 0.40746 1 2835 2835 0.69038 0 1 + 34316 21456 21902 21913 39323 39323 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN48_class_I_Rep_2 6 604.7734375 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 19.524 1 23.174 22.674 23.674 3.6497 0 0 0 0.40746 1 1504 1504 0.69038 0.088878 1 + 34317 21456 21902 21913 39324 39324 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN48_class_I_Rep_2 6 604.7734985351562 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 28.41 1 32.041 31.541 32.541 3.6311 0 0 0 0.40746 1 3906 3906 0.69038 0.088878 1 + 34318 21456 21902 21913 39325 39325 -0.06161945931057744 QWLWSYYY 8 Unmodified _QWLWSYYY_ 0 0 0 REV__ENST00000544245.1_12:9098936-9102159:-|nuORF REV__ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS UPN48_class_I_Rep_3 7 604.7744750976562 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 17.849 1 21.413 20.913 21.913 3.5637 0 0 0 0.40746 1 1080 1080 0.69038 0 1 + 34319 21456 21902 21913 39326 39326 -0.06161945931057744 QWMLNLEET 9 Unmodified _QWMLNLEET_ 0 0 0 L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|38|3|sense L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|38|3|sense L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|38|3|sense MSMS UPN47_class_I_Rep_1 2 582.2721557617188 2 582.273706 1162.53286 NaN NaN NaN NaN NaN NaN NaN 46.84 1 50.535 50.035 51.035 3.6951 0 0 0 0.39518 1 9973 9973 1.8442 0.36234 1 34320 11470 21903 21914 39327 39327 -0.04190528362278201 QWPHAHVWH 9 Unmodified _QWPHAHVWH_ 0 0 0 MLT1H_dup6229|chr10:103102120-103102508:+|1.356324635675553|0.1325735185325497|3.35|151.0|25|2|anti-sense MLT1H_dup6229|chr10:103102120-103102508:+|1.356324635675553|0.1325735185325497|3.35|151.0|25|2|anti-sense MLT1H_dup6229|chr10:103102120-103102508:+|1.356324635675553|0.1325735185325497|3.35|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_1 2 599.2883911132812 2 599.288674 1196.5628 NaN NaN NaN NaN NaN NaN NaN 25.464 1 29.214 28.714 29.714 3.7495 0 0 0 0.40038 1 3496 3496 0.6015 0 1 34321 16427 21904 21915 39328 39328 -0.027623637913848142 QWPLPIPSL 9 Unmodified _QWPLPIPSL_ 0 0 0 ENST00000358994.8_1_9:131909780-131909903:+|nuORF ENST00000358994.8_1_9:131909780-131909903:+|nuORF ENST00000358994.8_1_9:131909780-131909903:+|nuORF MSMS UPN47_class_I_Rep_1 2 525.8058471679688 2 525.80276 1049.59097 NaN NaN NaN NaN NaN NaN NaN 60.83 1 64.212 63.712 64.712 3.3815 0 0 0 0.38478 1 14221 14221 4.3292 0 1 34322 6304 21905 21916 39329 39329 0.06815521345333764 QWPRRLLRW 9 Unmodified _QWPRRLLRW_ 0 0 0 REV__ENST00000543005.5_1_12:124118406-124132575:+|nuORF REV__ENST00000543005.5_1_12:124118406-124132575:+|nuORF MSMS UPN47_class_I_Rep_1 2 437.5915832519531 3 437.591274 1309.75199 NaN NaN NaN NaN NaN NaN NaN 90.501 1 94.19 93.69 94.69 3.6899 0 0 0 0.3979 1 22609 22609 1.1933 0.41681 1 + 34323 22898 21906 21917 39330 39330 0.10950708501923145 QWQKKTKTMF 10 Unmodified _QWQKKTKTMF_ 0 0 0 REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|63|1|sense REV__L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|63|1|sense MSMS UPN48_class_I_Rep_2 6 442.5730895996094 3 442.572669 1324.69618 NaN NaN NaN NaN NaN NaN NaN 47.419 1 51.155 50.655 51.655 3.7361 0 0 0 0.53105 1 9363 9363 1.9064 0.71303 1 + 34324 29911 21907 21918 39331 39331 0.046816944794272786 QWQLPNKTSI 10 Unmodified _QWQLPNKTSI_ 0 0 0 REV__ENSG00000139266|ENST00000266643|MARCHF9 REV__ENSG00000139266|ENST00000266643|MARCHF9 MSMS UPN47_class_I_Rep_3 4 405.5557556152344 3 405.555784 1213.64552 NaN NaN NaN NaN NaN NaN NaN 48.69 1 51.924 51.424 52.424 3.2345 0 0 0 0.53105 1 10608 10608 2.086 0 1 + 34325 19307 21908 21919 39332 39332 0.04724488426086282 QWQPRFRV 8 Unmodified _QWQPRFRV_ 0 0 0 MER41-int_dup483|chr5:94040640-94042314:+|2.023338483075643|0.0526968405315972|5.26|151.0|8|1|sense MER41-int_dup483|chr5:94040640-94042314:+|2.023338483075643|0.0526968405315972|5.26|151.0|8|1|sense MER41-int_dup483|chr5:94040640-94042314:+|2.023338483075643|0.0526968405315972|5.26|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 558.8038940429688 2 558.8067 1115.59885 NaN NaN NaN NaN NaN NaN NaN 25.201 1 28.552 28.052 29.052 3.3509 0 0 0 0.40746 1 3505 3505 0.69038 0.088878 1 34326 15964 21909 21920 39333 39333 0.04567093385458065 QWRCIKKW 8 Unmodified _QWRCIKKW_ 0 0 0 REV__L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|23|2|sense REV__L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|23|2|sense MSMS UPN47_class_I_Rep_2 3 574.3141479492188 2 574.313303 1146.61205 NaN NaN NaN NaN NaN NaN NaN 26.419 1 29.914 29.414 30.414 3.4945 0 0 0 0.40746 1 3819 3819 0.69038 0 1 + 34327 26516 21910 21921 39334 39334 0.044612081731884246 QWREPPWL 8 Unmodified _QWREPPWL_ 0 0 0 REV__ENSG00000184903|ENST00000405709|IMMP2L REV__ENSG00000184903|ENST00000405709|IMMP2L MSMS UPN47_class_I_Rep_3 4 556.2877197265625 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 93.372 1 96.777 96.277 97.277 3.4052 0 0 0 0.40738 1 23279 23279 0.79363 0 1 + 34328 20833 21911 21922 39335 39335 0.01020582399974046 QWRQRENR 8 Unmodified _QWRQRENR_ 0 0 0 HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|2|1|sense HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|2|1|sense HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 586.8050537109375 2 586.80522 1171.59589 NaN NaN NaN NaN NaN NaN NaN 24.854 1 28.42 27.92 28.92 3.5667 0 0 0 0.40738 1 2807 2807 0.79363 0 1 34329 7783 21912 21923 39336 39336 0.016952182606473798 QWRWLWCA 8 Unmodified _QWRWLWCA_ 0 0 0 L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|282|2|anti-sense L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|282|2|anti-sense L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|282|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7755737304688 2 574.776554 1147.53855 -0.3846 -0.00022106 -1.2494 -0.00071813 -1.634 -0.00093919 574.7758093326491 16.731 0.53885 20.092 19.96 20.499 3.3619 85 59 2 0 0 0 0.82752 1 1169 1169 0.79363 0.19213 1 53677 34330 15111 21913 21924 39337 39337 -0.029313402692650925 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 481.2836608886719 3 481.283503 1440.82868 0.26989 0.0001299 -0.10755 -5.1763E-05 0.16234 7.8132E-05 481.28344371754173 96.539 0.11278 96.539 96.468 96.581 0 17 12 2 0 0 0 0.68081 1 23478 23478 0.45452 0 1 223390 + 34331 21832 21914 21925 39338 39338 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 481.6177062988281 3 481.283503 1440.82868 0.24813 0.00011942 -0.13864 -6.6724E-05 0.10949 5.2697E-05 481.28337637556626 94.597 1.1942 98.347 98.142 99.336 3.7508 273 161 3 0 0 0 0.68132 1 23518 23518 0.40827 0.24894 1 177450 + 34332 21832 21914 21925 39339 39339 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 481.61767578125 3 481.283503 1440.82868 0.11998 5.7743E-05 0.1376 6.6226E-05 0.25758 0.00012397 481.28343974621 94.515 1.3295 98.136 97.384 98.714 3.6208 331 161 4 0 0 0 0.65891 3 22702 22638;22702;22767 2.4348 1.325 1 447200 + 34333 21832 21914 21925 39340;39341;39342 39341 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 481.6177673339844 3 481.283503 1440.82868 0.11933 5.7431E-05 0.033512 1.6129E-05 0.15284 7.356E-05 481.28355878385236 95.165 0.25243 98.782 98.71 98.962 3.6167 55 30 2 0 0 0 0.68081 1 22935 22935 0.45452 0.45452 1 321760 + 34334 21832 21914 21925 39343 39343 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 481.2837829589844 3 481.283503 1440.82868 0.11945 5.7491E-05 -0.06013 -2.894E-05 0.059322 2.8551E-05 481.28343241377337 95.386 0.19175 99.003 98.944 99.136 3.6167 39 22 2 0 0 0 0.68081 1 23006 23006 0.45452 0 1 196200 + 34335 21832 21914 21925 39344 39344 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 481.283503 1440.82868 0.27023 0.00013006 -0.091985 -4.4271E-05 0.17825 8.5787E-05 481.2834602624003 97.868 0.049423 97.868 97.822 97.871 0 -0.10897 -0.00027582 NaN 2.4348 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 203870 + 34336 21832 21914 21925 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 481.283503 1440.82868 0.37856 0.0001822 -0.15113 -7.2735E-05 0.22744 0.00010946 481.2833398843922 94.455 0.40761 97.927 97.636 98.043 3.472 -0.049968 -0.00036121 NaN 2.4348 98 56 3 NaN NaN NaN NaN 0 NaN NaN 0 168790 + 34337 21832 21914 21925 0.12589900051102632 QWSRLRRRAGR 11 Unmodified _QWSRLRRRAGR_ 0 0 0 REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 481.283503 1440.82868 0.2374 0.00011425 0.057305 2.758E-05 0.2947 0.00014183 481.2835211427237 92.688 0.54945 96.451 96.202 96.751 3.7629 -0.044326 3.7245E-05 NaN 0.45452 131 77 2 NaN NaN NaN NaN 0 NaN NaN 0 329180 + 34338 21832 21914 21925 0.12589900051102632 QWTSQLKPYK 10 Unmodified _QWTSQLKPYK_ 0 0 0 L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|101|2|sense;L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|81|3|sense;L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|170|3|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|101|2|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|101|2|sense MSMS UPN47_class_I_Rep_2 3 639.8484497070312 2 639.845687 1277.67682 NaN NaN NaN NaN NaN NaN NaN 39.212 1 42.591 42.091 43.091 3.3785 0 0 0 0.53105 1 7676 7676 1.3295 0.80477 1 34339 13829 21915 21926 39345 39345 0.04909061460148223 QWWISLPA 8 Unmodified _QWWISLPA_ 0 0 0 REV__ENSG00000110446.11,SLC15A3,chr11,-,I5.1,60938133,60939479|25|6.59|3|intron REV__ENSG00000110446.11,SLC15A3,chr11,-,I5.1,60938133,60939479|25|6.59|3|intron MSMS UPN46_class_I_Rep_3 1 500.76519775390625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 118.61 1 118.61 118.11 119.11 0 0 0 0 0.40625 1 29447 29447 2.3027 0 1 + 34340 18433 21916 21927 39346 39346 0.018023926226987896 QYAPLLAVF 9 Unmodified _QYAPLLAVF_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS UPN48_class_I_Rep_2 6 511.28948974609375 2 511.289485 1020.56442 0.32179 0.00016453 -0.038204 -1.9533E-05 0.28359 0.00014499 511.2893476244456 89.033 0.86781 92.771 92.35 93.218 3.7379 172 103 3 0 0 0 0.066041 3 21215 21182;21215;21248 42.095 6.0504 1 617390 34341 2961 21917 21928 39347;39348;39349 39348 0.0549583245398253 QYAPLLAVF 9 Unmodified _QYAPLLAVF_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS UPN48_class_I_Rep_3 7 511.2894287109375 2 511.289485 1020.56442 0.31121 0.00015912 -0.017647 -9.0226E-06 0.29357 0.0001501 511.2893455198161 89.117 0.83302 92.946 92.554 93.387 3.8293 236 106 3 0 0 0 0.12799 1 21196 21196 28.487 5.3384 1 559890 34342 2961 21917 21928 39350 39350 0.0549583245398253 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4 ENSG00000140463|ENST00000268057|BBS4 ENSG00000140463|ENST00000268057|BBS4 MULTI-MSMS UPN48_class_I_Rep_1 5 542.2667846679688 2 542.266542 1082.51853 0.51992 0.00028193 0.058103 3.1507E-05 0.57802 0.00031344 542.2664937370141 63.903 0.35643 67.361 67.21 67.567 3.4578 34 24 2 0 0 0 0.40174 1 14399 14399 7.9102 2.1497 1 89597 34343 3177 21918 21929 39351 39351 -0.019428127282481 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4 ENSG00000140463|ENST00000268057|BBS4 ENSG00000140463|ENST00000268057|BBS4 MSMS UPN48_class_I_Rep_1 5 542.2664794921875 2 542.266542 1082.51853 NaN NaN NaN NaN NaN NaN NaN 63.675 1 67.132 66.632 67.632 3.4578 0 0 0 0.38299 1 14353 14353 4.756 0 1 34344 3177 21918 21929 39352 39352 -0.019428127282481 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4 ENSG00000140463|ENST00000268057|BBS4 ENSG00000140463|ENST00000268057|BBS4 MSMS UPN48_class_I_Rep_2 6 542.2670288085938 2 542.266542 1082.51853 NaN NaN NaN NaN NaN NaN NaN 63.601 1 67.075 66.575 67.575 3.4743 0 0 0 0.35339 1 14313 14313 7.9102 3.9658 1 34345 3177 21918 21929 39353 39353 -0.019428127282481 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4 ENSG00000140463|ENST00000268057|BBS4 ENSG00000140463|ENST00000268057|BBS4 MSMS UPN48_class_I_Rep_2 6 542.2667846679688 2 542.266542 1082.51853 NaN NaN NaN NaN NaN NaN NaN 63.755 1 67.229 66.729 67.729 3.4743 0 0 0 0.38299 1 14361 14361 4.756 0.42677 1 34346 3177 21918 21929 39354 39354 -0.019428127282481 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4 ENSG00000140463|ENST00000268057|BBS4 ENSG00000140463|ENST00000268057|BBS4 MULTI-MSMS UPN48_class_I_Rep_3 7 542.267333984375 2 542.266542 1082.51853 0.54022 0.00029294 0.034899 1.8925E-05 0.57512 0.00031187 542.2663714965087 63.564 0.43626 67.073 66.849 67.285 3.5091 48 36 2 0 0 0 0.30667 2 14196 14196;14266 13.508 4.9146 1 83616 34347 3177 21918 21929 39355;39356 39355 -0.019428127282481 QYDPAFHF 8 Unmodified _QYDPAFHF_ 0 0 0 L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|15|2|sense L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|15|2|sense L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 512.729248046875 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 38.839 1 42.077 41.577 42.577 3.238 0 0 0 0.40738 1 7606 7606 0.79363 0 1 34348 10490 21919 21930 39357 39357 -0.06575361170723681 QYEPLFHML 9 Oxidation (M) _QYEPLFHM(Oxidation (M))L_ QYEPLFHM(1)L QYEPLFHM(78)L 0 0 1 ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN48_class_I_Rep_1 5 597.286865234375 2 597.286617 1192.55868 0.53489 0.00031948 -0.2372 -0.00014168 0.29768 0.0001778 597.2863323750267 58.3 0.63427 61.787 61.443 62.077 3.487 79 37 3 0 0 0 0.0055873 2 12697 12697;12739 77.984 45.679 1 245690 34349 4534 21920 21931 39358;39359 39358 145 -0.029896341199901144 QYEPLFHML 9 Oxidation (M) _QYEPLFHM(Oxidation (M))L_ QYEPLFHM(1)L QYEPLFHM(78)L 0 0 1 ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN48_class_I_Rep_2 6 597.286865234375 2 597.286617 1192.55868 0.57869 0.00034564 -0.087813 -5.2449E-05 0.49088 0.00029319 597.2865515941704 58.309 0.66005 61.808 61.445 62.105 3.4987 71 39 2 0 0 0 0.0055873 3 12661 12618;12661;12703 77.984 49.497 1 247240 34350 4534 21920 21931 39360;39361;39362 39361 145 -0.029896341199901144 QYEPLFHML 9 Oxidation (M) _QYEPLFHM(Oxidation (M))L_ QYEPLFHM(1)L QYEPLFHM(150)L 0 0 1 ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD ENSG00000171608|ENST00000377346|PIK3CD MULTI-MSMS UPN48_class_I_Rep_3 7 597.2869262695312 2 597.286617 1192.55868 0.46926 0.00028028 0.12126 7.2428E-05 0.59052 0.00035271 597.286700362363 58.179 0.63254 61.711 61.334 61.967 3.5317 93 42 3 0 0 0 0.0042631 3 12565 12522;12565;12605 147.83 103.42 1 348010 34351 4534 21920 21931 39363;39364;39365 39364 145 -0.029896341199901144 QYESKVFYL 9 Unmodified _QYESKVFYL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS UPN48_class_I_Rep_1 5 588.8005981445312 2 588.800414 1175.58628 0.48213 0.00028388 0.34435 0.00020275 0.82648 0.00048663 588.8005206084113 55.951 0.45817 59.452 59.253 59.711 3.5014 56 35 2 0 0 0 0.37599 1 11959 11959 9.3831 1.473 1 117660 34352 2585;4450 21921 21932 39366 39366 0.005505924119233896 QYESKVFYL 9 Unmodified _QYESKVFYL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS UPN48_class_I_Rep_3 7 589.30322265625 2 588.800414 1175.58628 0.39766 0.00023414 1.0364 0.00061026 1.4341 0.0008444 588.8009641957403 55.808 0.47482 59.363 59.125 59.6 3.5554 59 33 2 0 0 0 0.30034 3 11906 11830;11879;11906 13.906 5.9959 1 163860 34353 2585;4450 21921 21932 39367;39368;39369 39369 0.005505924119233896 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 MULTI-SECPEP UPN48_class_I_Rep_1 5 563.8174438476562 2 563.782025 1125.5495 0.50599 0.00028527 0.54813 0.00030902 1.0541 0.00059429 563.7823538680839 55.959 0.69679 59.461 59.135 59.832 3.5014 107 50 3 0 0 0 0.053797 1 12005 12005 36.506 5.8697 1 283430 34354 1356 21922 21933 39370 39370 -0.008256594140220841 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 MULTI-SECPEP UPN48_class_I_Rep_2 6 563.817138671875 2 563.782025 1125.5495 0.61065 0.00034427 0.4 0.00022551 1.0106 0.00056979 563.7821734113102 55.982 0.7538 59.515 59.103 59.857 3.5333 98 53 3 0 0 0 0.047208 1 11944 11944 38.176 14.155 1 211640 34355 1356 21922 21933 39371 39371 -0.008256594140220841 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 MULTI-SECPEP UPN48_class_I_Rep_3 7 563.8170776367188 2 563.782025 1125.5495 0.32433 0.00018285 0.51721 0.00029159 0.84154 0.00047444 563.7824572028861 55.839 0.75292 59.394 59.012 59.765 3.5554 119 57 3 0 0 0 0.044386 1 11835 11835 45.7 7.7256 1 208370 34356 1356 21922 21933 39372 39372 -0.008256594140220841 QYGKSCSLKL 10 Unmodified _QYGKSCSLKL_ 0 0 0 REV__L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|36|3|sense REV__L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|36|3|sense MSMS UPN47_class_I_Rep_1 2 563.7979125976562 2 563.799891 1125.58523 NaN NaN NaN NaN NaN NaN NaN 56.492 1 59.949 59.449 60.449 3.4572 0 0 0 0.53105 1 12906 12906 5.2969 0.066215 1 + 34357 24385 21923 21934 39373 39373 0.027460547713417327 QYHTVLII 8 Unmodified _QYHTVLII_ 0 0 0 L1MD_dup7566|chr16:47278989-47280485:-|1.2398178549776038|0.0426731243423375|4.86|151.0|83|2|anti-sense;L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|182|1|anti-sense;L1M4c_dup1409|chr7:67217008-67217846:-|1.0376094785003296|0.0466978014352553|4.47|151.0|50|3|anti-sense;L1ME1_dup2870|chr2:26225414-26227230:+|1.5320494804420048|0.3334369576783769|2.2|151.0|120|3|anti-sense;L1M3_dup4526|chr11:14651924-14652533:-|1.4322195247207357|0.0291823722716545|5.62|149.0|43|2|anti-sense;L1MDa_dup6526|chr20:3943174-3943588:+|1.335707257175648|0.0540814354605274|4.63|151.0|23|2|anti-sense;L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|182|1|anti-sense;L1MB8_dup15195|chr18:79500001-79503235:+|1.3526517733473615|0.0507365754016751|4.74|151.0|169|2|anti-sense;L1MC1_dup9593|chr12:12773550-12774262:+|1.851440627143168|0.0354275280746385|5.71|151.0|37|2|anti-sense;L1MB2_dup5934|chr12:25093900-25095859:-|1.5298225386994284|0.075536886194897|4.34|150.0|77|1|anti-sense;L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|92|1|anti-sense L1MD_dup7566|chr16:47278989-47280485:-|1.2398178549776038|0.0426731243423375|4.86|151.0|83|2|anti-sense L1MD_dup7566|chr16:47278989-47280485:-|1.2398178549776038|0.0426731243423375|4.86|151.0|83|2|anti-sense MSMS UPN47_class_I_Rep_3 4 493.786865234375 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.32 1 112.86 112.36 113.36 3.5347 0 0 0 0.4044 1 26854 26854 4.756 0 1 34358 8769 21924 21935 39374 39374 0.06630948311226348 QYIVYHHR 8 Unmodified _QYIVYHHR_ 0 0 0 ENSG00000180257|ENST00000444460|ZNF816 ENSG00000180257|ENST00000444460|ZNF816 ENSG00000180257|ENST00000444460|ZNF816 MULTI-MSMS UPN47_class_I_Rep_2 3 559.2664184570312 2 558.290882 1114.56721 0.47766 0.00026667 2.869 0.0016017 3.3467 0.0018684 558.2918580607914 77.49 0.15511 80.822 80.756 80.911 3.3315 18 14 2 0 0 0 0.82752 1 19244 19244 2.3027 0.24298 1 55936 34359 4884 21925 21936 39375 39375 0.014511006314933184 QYKIWGMV 8 Unmodified _QYKIWGMV_ 0 0 0 REV__nc|ENSG00000164325|Q8WUU8-2|TMEM174 REV__nc|ENSG00000164325|Q8WUU8-2|TMEM174 MSMS UPN46_class_I_Rep_3 1 512.7673950195312 2 512.767863 1023.52117 NaN NaN NaN NaN NaN NaN NaN 18.056 1 18.056 17.556 18.556 0 0 0 0 0.40738 1 1515 1515 0.79363 0 1 + 34360 20054 21926 21937 39376 39376 0.010353194050594539 QYKKKAAA 8 Unmodified _QYKKKAAA_ 0 0 0 ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|1|intron;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|3|intron;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I24.1,48511469,48514714|58|4.23|2|intron;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I24.1,48511469,48514714|58|4.23|5|intron;ENSG00000162869|ENST00000294952|PPP1R21;ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|5|intron ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron ENSG00000162869.16,PPP1R21,chr2,+,I18.1,48491171,48495678|59|9.28|2|intron MSMS UPN48_class_I_Rep_1 5 454.2715759277344 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 29.284 1 32.834 32.334 33.334 3.5499 0 0 0 0.40738 1 4046 4046 0.79363 0 1 34361 3968 21927 21938 39377 39377 0.07169794996980272 QYKLLFRVG 9 Unmodified _QYKLLFRVG_ 0 0 0 REV__ENST00000361618.3_1_4:170927100-170947437:-|nuORF REV__ENST00000361618.3_1_4:170927100-170947437:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.3350219726562 2 562.334759 1122.65496 0.63497 0.00035707 -0.21656 -0.00012178 0.41842 0.00023529 562.3340838451653 110.24 0.22588 113.77 113.7 113.93 3.5271 66 33 3 0 0 0 0.48643 1 26849 26849 2.0598 0.21551 1 156570 + 34362 21904 21928 21939 39378 39378 0.09854301502264207 QYKQIKIKK 9 Unmodified _QYKQIKIKK_ 0 0 0 L1PA15_dup211|chr1:110908230-110909573:+|6.302656247955712|0.0337273952274197|7.55|151.0|33|3|sense L1PA15_dup211|chr1:110908230-110909573:+|6.302656247955712|0.0337273952274197|7.55|151.0|33|3|sense L1PA15_dup211|chr1:110908230-110909573:+|6.302656247955712|0.0337273952274197|7.55|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 588.8760986328125 2 588.876791 1175.73903 NaN NaN NaN NaN NaN NaN NaN 55.926 1 55.926 55.426 56.426 0 0 0 0 0.4007 1 12176 12176 0.52476 0 1 34363 13892 21929 21940 39379 39379 0.15818832599143207 QYLAADGFLD 10 Unmodified _QYLAADGFLD_ 0 0 0 REV__ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|2|intron REV__ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|2|intron MSMS UPN48_class_I_Rep_2 6 556.7853393554688 2 556.766571 1111.51859 NaN NaN NaN NaN NaN NaN NaN 20.377 1 24.025 23.525 24.525 3.648 0 0 0 0.53105 1 1739 1739 1.4819 0 1 + 34364 21080 21930 21941 39380 39380 -0.03270857518896264 QYLFELWS 8 Unmodified _QYLFELWS_ 0 0 0 REV__LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense REV__LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 543.2682495117188 2 543.26875 1084.52295 NaN NaN NaN NaN NaN NaN NaN 112.64 1 116.27 115.77 116.77 3.6321 0 0 0 0.40746 1 27339 27339 0.69038 0 1 + 34365 30947 21931 21942 39381 39381 -0.015933483053458986 QYLIKHRH 8 Unmodified _QYLIKHRH_ 0 0 0 REV__L1MEf_dup692|chr1:219183931-219185423:-|1.293777787642214|0.1029386430527087|3.65|150.0|8|1|sense REV__L1MEf_dup692|chr1:219183931-219185423:-|1.293777787642214|0.1029386430527087|3.65|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 547.815185546875 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 19.022 1 22.553 22.053 23.053 3.5313 0 0 0 0.40746 1 1375 1375 0.69038 0 1 + 34366 28677 21932 21943 39382 39382 0.07143379902504421 QYLIPFYG 8 Unmodified _QYLIPFYG_ 0 0 0 L1MB5_dup660|chr2:24510847-24511920:-|3.144309944004784|0.0411714670033798|6.25|151.0|36|1|anti-sense L1MB5_dup660|chr2:24510847-24511920:-|3.144309944004784|0.0411714670033798|6.25|151.0|36|1|anti-sense L1MB5_dup660|chr2:24510847-24511920:-|3.144309944004784|0.0411714670033798|6.25|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_1 2 500.76019287109375 2 500.760561 999.506569 NaN NaN NaN NaN NaN NaN NaN 107.12 1 110.79 110.29 111.29 3.6724 0 0 0 0.40581 1 26241 26241 2.8892 0 1 34367 10635 21933 21944 39383 39383 0.006795705285639997 QYLKVYYY 8 Unmodified _QYLKVYYY_ 0 0 0 L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|46|3|sense L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|46|3|sense L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|46|3|sense MSMS UPN47_class_I_Rep_2 3 570.2906494140625 2 570.292225 1138.5699 NaN NaN NaN NaN NaN NaN NaN 52.749 1 56.075 55.575 56.575 3.3266 0 0 0 0.36705 1 11788 11788 18.135 1.9859 1 34368 11718 21934 21945 39384 39384 0.0061551124579182215 QYLKVYYY 8 Unmodified _QYLKVYYY_ 0 0 0 L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|46|3|sense L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|46|3|sense L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|46|3|sense MSMS UPN47_class_I_Rep_2 3 570.2938232421875 2 570.292225 1138.5699 NaN NaN NaN NaN NaN NaN NaN 53.185 1 56.511 56.011 57.011 3.3266 0 0 0 0.39819 1 11922 11922 8.5933 2.3875 1 34369 11718 21934 21945 39385 39385 0.0061551124579182215 QYLLNFVR 8 Unmodified _QYLLNFVR_ 0 0 0 REV__HUERS-P3-int_dup478|chr11:74874263-74875596:+|1.4634502499744524|0.2003527102884963|2.87|151.0|14|2|sense REV__HUERS-P3-int_dup478|chr11:74874263-74875596:+|1.4634502499744524|0.2003527102884963|2.87|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 526.796630859375 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.018 1 23.37 22.87 23.87 3.3514 0 0 0 0.40746 1 1984 1984 0.69038 0 1 + 34370 23974 21935 21946 39386 39386 0.05773753059793307 QYLLPLHP 8 Unmodified _QYLLPLHP_ 0 0 0 REV__MER31B_dup927|chrX:97253808-97254209:-|1.1085636886041188|0.0120386010375305|6.52|149.0|3|1|sense REV__MER31B_dup927|chrX:97253808-97254209:-|1.1085636886041188|0.0120386010375305|6.52|149.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 490.78179931640625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.54 114.04 115.04 3.5271 0 0 0 0.40738 1 27026 27026 0.79363 0 1 + 34371 31258 21936 21947 39387 39387 0.05850965656793505 QYLLSYFHC 9 Unmodified _QYLLSYFHC_ 0 0 0 REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|65|3|sense REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|65|3|sense MSMS UPN47_class_I_Rep_1 2 587.275146484375 2 587.273509 1172.53247 NaN NaN NaN NaN NaN NaN NaN 25.322 1 29.071 28.571 29.571 3.7495 0 0 0 0.40038 1 3456 3456 0.6015 0 1 + 34372 27801 21937 21948 39388 39388 -0.04689903291432529 QYLQFKTR 8 Unmodified _QYLQFKTR_ 0 0 0 HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|36|2|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|36|2|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 542.3009643554688 2 542.300916 1082.58728 NaN NaN NaN NaN NaN NaN NaN 111.61 1 115.18 114.68 115.68 3.572 0 0 0 0.40746 1 27538 27538 0.69038 0.088878 1 34373 8276 21938 21949 39389 39389 0.04928851571457926 QYMLVLVC 8 Unmodified _QYMLVLVC_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|201|3|sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|201|3|sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|201|3|sense MSMS UPN46_class_I_Rep_3 1 484.7471923828125 2 484.750824 967.487096 NaN NaN NaN NaN NaN NaN NaN 115.14 1 115.14 114.64 115.64 0 0 0 0 0.40738 1 28477 28477 0.79363 0 1 34374 8033 21939 21950 39390 39390 0.002051549217867432 QYNIYAAL 8 Unmodified _QYNIYAAL_ 0 0 0 ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;ENSG00000053108|ENST00000265342|FSTL4 ENST00000509525.5_1_5:132534789-132560973:-|nuORF ENST00000509525.5_1_5:132534789-132560973:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.2472229003906 2 478.247818 954.481082 -0.38757 -0.00018535 -0.069514 -3.3245E-05 -0.45708 -0.0002186 478.24765147665784 12.715 0.14082 16.165 16.077 16.218 3.45 21 15 2 0 0 0 0.82752 1 140 140 0.79363 0 1 24322 34375 926 21940 21951 39391 39391 0.0020209600611451606 QYNKSCYKA 9 Unmodified _QYNKSCYKA_ 0 0 0 nc|ENSG00000168026|Q8NDW8-3|TTC21A;nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A nc|ENSG00000168026|Q8NDW8-3|TTC21A nc|ENSG00000168026|Q8NDW8-3|TTC21A MSMS UPN48_class_I_Rep_1 5 552.7600708007812 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 77.751 1 81.273 80.773 81.773 3.5221 0 0 0 0.39428 1 18518 18518 2.0598 0.21551 1 34376 4346 21941 21952 39392 39392 -0.04063377813895386 QYNVNITF 8 Unmodified _QYNVNITF_ 0 0 0 Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|61|3|sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|61|3|sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|61|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 499.7500915527344 2 499.750724 997.486896 0.03748 1.8731E-05 -0.156 -7.796E-05 -0.11852 -5.9229E-05 499.75058492936466 29.417 0.44781 29.417 29.281 29.729 0 54 38 2 0 0 0 0.82752 1 4672 4672 13.508 0 1 75464 34377 33113 21942 21953 39393 39393 -0.011948054822028098 QYNVPPFY 8 Unmodified _QYNVPPFY_ 0 0 0 REV__ENST00000543406.1_1_11:60708255-60708741:-|nuORF REV__ENST00000543406.1_1_11:60708255-60708741:-|nuORF MSMS UPN47_class_I_Rep_1 2 514.2449340820312 2 514.247818 1026.48108 NaN NaN NaN NaN NaN NaN NaN 36.911 1 40.581 40.081 41.081 3.6692 0 0 0 0.40604 1 6945 6945 2.5775 0 1 + 34378 22926 21943 21954 39394 39394 -0.031099039938681017 QYNVPPFY 8 Unmodified _QYNVPPFY_ 0 0 0 REV__ENST00000543406.1_1_11:60708255-60708741:-|nuORF REV__ENST00000543406.1_1_11:60708255-60708741:-|nuORF MSMS UPN47_class_I_Rep_2 3 514.245849609375 2 514.247818 1026.48108 NaN NaN NaN NaN NaN NaN NaN 37.121 1 40.52 40.02 41.02 3.3988 0 0 0 0.40364 1 7042 7042 5.7604 0 1 + 34379 22926 21943 21954 39395 39395 -0.031099039938681017 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 533.7874145507812 2 533.787641 1065.56073 0.34471 0.000184 -0.21907 -0.00011694 0.12564 6.7067E-05 533.7872551892694 51.031 1.0053 54.556 53.961 54.966 3.5246 126 65 3 0 0 0 0.11683 2 10508 10508;10548 30.637 8.8899 1 295870 34380 1340 21944 21955 39396;39397 39396 0.030571626801247476 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 533.7872314453125 2 533.787641 1065.56073 0.4266 0.00022772 -0.17688 -9.4419E-05 0.24972 0.0001333 533.787197130899 50.783 0.84146 54.45 54.101 54.943 3.6679 112 50 3 0 0 0 0.11683 3 10417 10417;10462;10506 30.637 30.637 1 296870 34381 1340 21944 21955 39398;39399;39400 39398 0.030571626801247476 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 533.787641 1065.56073 0.34471 0.000184 -0.21907 -0.00011694 0.12564 6.7067E-05 533.7872551892694 51.031 1.0053 54.556 53.961 54.966 3.5246 0.052553 -2.0142E-05 NaN 30.637 126 65 3 NaN NaN NaN NaN 0 NaN NaN 0 295870 34382 1340 21944 21955 0.030571626801247476 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24 ENST00000555762.1_1_14:94524146-94547480:-|nuORF ENST00000555762.1_1_14:94524146-94547480:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 533.787641 1065.56073 0.4266 0.00022772 -0.17688 -9.4419E-05 0.24972 0.0001333 533.787197130899 50.783 0.84146 54.45 54.101 54.943 3.6679 -0.052553 2.4891E-05 NaN 30.637 112 50 3 NaN NaN NaN NaN 0 NaN NaN 0 296870 34383 1340 21944 21955 0.030571626801247476 QYPLMITVK 9 Unmodified _QYPLMITVK_ 0 0 0 REV__ENST00000468844.1_1_X:118920495-118923886:-|nuORF REV__ENST00000468844.1_1_X:118920495-118923886:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 546.3087768554688 2 546.809728 1091.6049 0.42759 0.00023381 1.2222 0.00066833 1.6498 0.00090214 546.8104223114782 74.761 0.39585 78.155 77.807 78.203 3.3937 53 34 2 0 0 0 0.12281 1 18406 18406 1.8442 0 1 172850 + 34384 22491 21945 21956 39401 39401 0.06276430782099851 QYPNYQIEL 9 Unmodified _QYPNYQIEL_ 0 0 0 REV__L1M2_dup4320|chr8:12559066-12559564:+|1.2297461316117857|0.2386409934406597|2.37|151.0|13|2|sense REV__L1M2_dup4320|chr8:12559066-12559564:+|1.2297461316117857|0.2386409934406597|2.37|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.2885131835938 2 584.287671 1166.56079 0.54031 0.0003157 -0.030075 -1.7572E-05 0.51024 0.00029813 584.2876088876536 58.807 1.1016 62.294 61.875 62.977 3.487 247 69 5 0 0 0 0.42249 1 12757 12757 6.7232 6.7232 1 3861500 + 34385 24208 21946 21957 39402 39402 -0.015828821105287716 QYPNYQIEL 9 Unmodified _QYPNYQIEL_ 0 0 0 REV__L1M2_dup4320|chr8:12559066-12559564:+|1.2297461316117857|0.2386409934406597|2.37|151.0|13|2|sense REV__L1M2_dup4320|chr8:12559066-12559564:+|1.2297461316117857|0.2386409934406597|2.37|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 584.2883911132812 2 584.287671 1166.56079 0.56818 0.00033198 -0.021575 -1.2606E-05 0.5466 0.00031937 584.2876344143053 58.788 1.2756 62.287 61.864 63.139 3.4987 265 81 4 0 0 0 0.42249 1 13041 13041 6.7232 6.7232 1 5828300 + 34386 24208 21946 21957 39403 39403 -0.015828821105287716 QYPNYQIEL 9 Unmodified _QYPNYQIEL_ 0 0 0 REV__L1M2_dup4320|chr8:12559066-12559564:+|1.2297461316117857|0.2386409934406597|2.37|151.0|13|2|sense REV__L1M2_dup4320|chr8:12559066-12559564:+|1.2297461316117857|0.2386409934406597|2.37|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.288818359375 2 584.287671 1166.56079 0.45004 0.00026295 0.077494 4.5279E-05 0.52754 0.00030823 584.2876714769718 58.74 1.299 62.263 61.735 63.034 3.5231 267 88 4 0 0 0 0.42249 1 12609 12609 6.7232 0 1 4790600 + 34387 24208 21946 21957 39404 39404 -0.015828821105287716 QYPVIIHLI 9 Unmodified _QYPVIIHLI_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 548.3311767578125 2 548.331685 1094.64882 0.49747 0.00027278 0.23894 0.00013102 0.73642 0.0004038 548.3317675988661 72.944 0.41732 76.417 76.154 76.571 3.4732 42 30 2 0 0 0 0.21334 3 17130 17130;17138;17180 19.439 10.092 1 132210 34388 1019 21947 21958 39405;39406;39407 39405 0.10527783270754298 QYPVIIHLI 9 Unmodified _QYPVIIHLI_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MSMS UPN48_class_I_Rep_2 6 548.3318481445312 2 548.331685 1094.64882 NaN NaN NaN NaN NaN NaN NaN 72.839 1 76.403 75.903 76.903 3.5645 0 0 0 0.15165 1 17073 17073 19.439 10.092 1 34389 1019 21947 21958 39408 39408 0.10527783270754298 QYPVIIHLI 9 Unmodified _QYPVIIHLI_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 548.3319091796875 2 548.331685 1094.64882 0.49397 0.00027086 -0.14385 -7.8877E-05 0.35012 0.00019198 548.3316336221332 72.691 0.55575 76.229 76.069 76.625 3.5373 61 43 2 0 0 0 0.21334 2 16994 16956;16994 19.439 5.9311 1 180630 34390 1019 21947 21958 39409;39410 39410 0.10527783270754298 QYQEITHPT 9 Unmodified _QYQEITHPT_ 0 0 0 REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|82|1|anti-sense REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_3 4 558.8062744140625 2 558.769645 1115.52474 NaN NaN NaN NaN NaN NaN NaN 55.363 1 58.541 58.041 59.041 3.1779 0 0 0 0.39428 1 12646 12646 2.0598 0.21551 1 + 34391 17416 21948 21959 39411 39411 -0.02840339287399729 QYQKIMKR 8 Unmodified _QYQKIMKR_ 0 0 0 nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 MSMS UPN48_class_I_Rep_3 7 547.81494140625 2 547.810593 1093.60663 NaN NaN NaN NaN NaN NaN NaN 18.315 1 21.902 21.402 22.402 3.5874 0 0 0 0.40746 1 1189 1189 0.69038 0 1 34392 3032 21949 21960 39412 39412 0.06357484590716922 QYQKNKKR 8 Unmodified _QYQKNKKR_ 0 0 0 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS UPN46_class_I_Rep_3 1 546.8170166015625 2 546.817264 1091.61998 -0.21794 -0.00011918 0.42842 0.00023427 0.21048 0.00011509 546.817380919995 12.864 0.3026 12.864 12.777 13.079 0 48 26 2 0 0 0 0.82752 1 215 215 0.69038 0 1 110720 + 34393 19539 21950 21961 39413 39413 0.0778305869430369 QYQNIVKVT 9 Unmodified _QYQNIVKVT_ 0 0 0 REV__ENST00000548656.2_1_14:19411434-19411701:-|nuORF REV__ENST00000548656.2_1_14:19411434-19411701:-|nuORF MSMS UPN47_class_I_Rep_3 4 546.8079223632812 2 546.806031 1091.59751 NaN NaN NaN NaN NaN NaN NaN 47.24 1 50.484 49.984 50.984 3.2439 0 0 0 0.38784 1 10178 10178 3.5965 0 1 + 34394 18218 21951 21962 39414 39414 0.05537414506034111 QYQPCQRQ 8 Unmodified _QYQPCQRQ_ 0 0 0 REV__ENST00000561204.5_1_19:47920462-47921455:-|nuORF REV__ENST00000561204.5_1_19:47920462-47921455:-|nuORF MSMS UPN47_class_I_Rep_1 2 525.7537231445312 2 525.742908 1049.47126 NaN NaN NaN NaN NaN NaN NaN 117.94 1 121.54 121.04 122.04 3.6036 0 0 0 0.40625 1 29251 29251 2.3027 0.24298 1 + 34395 23025 21952 21963 39415 39415 -0.051494152708983165 QYRAKQYF 8 Unmodified _QYRAKQYF_ 0 0 0 REV__nc|ENSG00000180745|Q8NCR9-2|CLRN3 REV__nc|ENSG00000180745|Q8NCR9-2|CLRN3 MSMS UPN48_class_I_Rep_2 6 552.2847290039062 2 552.285266 1102.55598 NaN NaN NaN NaN NaN NaN NaN 62.374 1 65.848 65.348 66.348 3.4738 0 0 0 0.40625 1 13934 13934 2.3027 0 1 + 34396 20713 21953 21964 39416 39416 0.008802785373518418 QYRINDGP 8 Unmodified _QYRINDGP_ 0 0 0 REV__MER21A_dup325|chr3:25724855-25725755:+|1.4627199695754245|0.4358351428435922|1.75|150.0|43|2|anti-sense REV__MER21A_dup325|chr3:25724855-25725755:+|1.4627199695754245|0.4358351428435922|1.75|150.0|43|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7702941894531 2 481.738148 961.461744 -0.20497 -9.8742E-05 -0.14424 -6.9487E-05 -0.34921 -0.00016823 481.7379859207233 23.803 0.57437 27.269 27.039 27.614 3.4655 74 46 2 0 0 0 0.82752 1 2987 2987 0.69038 0 1 70310 + 34397 31185 21954 21965 39417 39417 -0.020528602847662114 QYRRKLREEFV 11 Unmodified _QYRRKLREEFV_ 0 0 0 nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13 nc|ENSG00000065883|Q14004-2|CDK13 nc|ENSG00000065883|Q14004-2|CDK13 MULTI-MSMS UPN48_class_I_Rep_2 6 508.9535217285156 3 508.619558 1522.83684 0.29004 0.00014752 -0.32463 -0.00016511 -0.034589 -1.7593E-05 508.6193584995944 35.756 1.2701 39.444 38.952 40.222 3.6877 277 137 3 0 0 0 0.68478 1 5847 5847 0.094841 0.094841 1 407400 34398 1013 21955 21966 39418 39418 0.09633989457188363 QYSHPNIVRL 10 Unmodified _QYSHPNIVRL_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES;ENST00000464684.5_1_15:91434747-91438785:+|nuORF nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN47_class_I_Rep_1 2 613.8359375 2 613.835654 1225.65676 NaN NaN NaN NaN NaN NaN NaN 63.762 1 67.118 66.618 67.618 3.3557 0 0 0 0.53105 1 15107 15107 1.4819 0 1 34399 4957 21956 21967 39419 39419 0.052953105202277584 QYSKAPPW 8 Unmodified _QYSKAPPW_ 0 0 0 REV__LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense REV__LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 488.74871826171875 2 488.747985 975.481417 NaN NaN NaN NaN NaN NaN NaN 68.021 1 71.529 71.029 72.029 3.5077 0 0 0 0.40738 1 15571 15571 0.79363 0 1 + 34400 30859 21957 21968 39420 39420 -0.007304842740154527 QYSKVKKVL 9 Unmodified _QYSKVKKVL_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MSMS UPN46_class_I_Rep_3 1 546.84033203125 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 96.979 1 96.979 96.479 97.479 0 0 0 0 0.4007 1 23587 23587 0.52476 0 1 + 34401 18714 21958 21969 39421 39421 0.12811168299458586 QYSNRRLS 8 Unmodified _QYSNRRLS_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|353|2|anti-sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|353|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 511.7670593261719 2 512.270147 1022.52574 0.13214 6.7692E-05 -3.3071 -0.0016941 -3.175 -0.0016264 512.2683401940986 33.279 0.11794 33.279 33.23 33.348 0 13 10 2 0 0 0 0.72333 1 5794 5794 0.52476 0.12405 1 33871 + 34402 23735 21959 21970 39422 39422 0.015379198721802823 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MSMS UPN48_class_I_Rep_1 5 505.27166748046875 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.959 1 83.508 83.008 84.008 3.5487 0 0 0 0.018698 1 19097 19097 53.833 7.8118 1 34403 1221 21960 21971 39423 39423 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MSMS UPN48_class_I_Rep_1 5 505.27178955078125 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 80.2 1 83.748 83.248 84.248 3.5487 0 0 0 0.0036588 1 19140 19140 58.679 1.2075 1 34404 1221 21960 21971 39424 39424 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MSMS UPN48_class_I_Rep_2 6 505.2715148925781 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.852 1 83.497 82.997 83.997 3.6446 0 0 0 0.00033255 1 18981 18981 65.235 0.9987 1 34405 1221 21960 21971 39425 39425 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MSMS UPN48_class_I_Rep_2 6 505.27166748046875 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 80.016 1 83.661 83.161 84.161 3.6446 0 0 0 0.0011079 1 19012 19012 61.357 9.0891 1 34406 1221 21960 21971 39426 39426 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MSMS UPN48_class_I_Rep_3 7 505.2715148925781 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.918 1 83.56 83.06 84.06 3.6423 0 0 0 8.5505E-07 1 18947 18947 71.922 7.686 1 34407 1221 21960 21971 39427 39427 0.024109555572863428 QYSSWPRVA 9 Unmodified _QYSSWPRVA_ 0 0 0 L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|73|3|sense L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|73|3|sense L1MA1_dup3668|chr14:56167089-56169784:-|1.0745435070546157|0.043107523709492|4.64|151.0|73|3|sense MSMS UPN48_class_I_Rep_3 7 547.2733764648438 2 547.274898 1092.53524 NaN NaN NaN NaN NaN NaN NaN 27.34 1 31.096 30.596 31.596 3.7555 0 0 0 0.39598 1 3577 3577 1.6526 0.85899 1 34408 9300 21961 21972 39428 39428 -0.007323118422846164 QYTGCGFV 8 Unmodified _QYTGCGFV_ 0 0 0 L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|184|1|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|184|1|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|184|1|anti-sense MSMS UPN48_class_I_Rep_1 5 437.6912536621094 2 437.691821 873.369089 NaN NaN NaN NaN NaN NaN NaN 50.102 1 53.627 53.127 54.127 3.5246 0 0 0 0.40581 1 10197 10197 2.8892 0 1 34409 14574 21962 21973 39429 39429 -0.07266081342504549 QYTGCGFV 8 Unmodified _QYTGCGFV_ 0 0 0 L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|184|1|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|184|1|anti-sense L1PA6_dup1971|chr5:64905690-64911090:-|2.89769006375259|0.0672965630293812|5.43|151.0|184|1|anti-sense MSMS UPN48_class_I_Rep_3 7 437.6911926269531 2 437.691821 873.369089 NaN NaN NaN NaN NaN NaN NaN 50.676 1 54.298 53.798 54.798 3.621 0 0 0 0.40581 1 10307 10307 2.8892 0 1 34410 14574 21962 21973 39430 39430 -0.07266081342504549 QYTSSKLNNF 10 Unmodified _QYTSSKLNNF_ 0 0 0 L1MB7_dup16742|chr13:49031399-49032539:+|1.1469809858633802|0.0885830050167074|3.69|151.0|6|1|sense L1MB7_dup16742|chr13:49031399-49032539:+|1.1469809858633802|0.0885830050167074|3.69|151.0|6|1|sense L1MB7_dup16742|chr13:49031399-49032539:+|1.1469809858633802|0.0885830050167074|3.69|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 601.2984619140625 2 601.296027 1200.5775 NaN NaN NaN NaN NaN NaN NaN 89.421 1 93.046 92.546 93.546 3.6255 0 0 0 0.53105 1 21473 21473 17.443 5.9479 1 34411 10735 21963 21974 39431 39431 -0.014763812245973895 QYVASKNRR 9 Unmodified _QYVASKNRR_ 0 0 0 MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|42|3|sense MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|42|3|sense MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|42|3|sense MSMS UPN48_class_I_Rep_1 5 561.3269653320312 2 561.312346 1120.61014 NaN NaN NaN NaN NaN NaN NaN 45.251 1 48.768 48.268 49.268 3.5162 0 0 0 0.37891 1 8707 8707 5.7319 1.4026 1 34412 16385 21964 21975 39432 39432 0.05465870688931318 QYVASKNRR 9 Unmodified _QYVASKNRR_ 0 0 0 MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|42|3|sense MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|42|3|sense MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|42|3|sense MSMS UPN48_class_I_Rep_2 6 561.3258056640625 2 561.312346 1120.61014 NaN NaN NaN NaN NaN NaN NaN 44.951 1 48.713 48.213 49.213 3.7617 0 0 0 0.37891 1 8627 8627 5.7319 1.4026 1 34413 16385 21964 21975 39433 39433 0.05465870688931318 QYWCRSQY 8 Unmodified _QYWCRSQY_ 0 0 0 REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|14|1|sense REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 567.2467651367188 2 567.245283 1132.47601 NaN NaN NaN NaN NaN NaN NaN 27.69 1 31.253 30.753 31.753 3.5629 0 0 0 0.40501 1 3605 3605 3.9444 0.3479 1 + 34414 30512 21965 21976 39434 39434 -0.08492531128126757 QYWCRSQY 8 Unmodified _QYWCRSQY_ 0 0 0 REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|14|1|sense REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 567.2467041015625 2 567.245283 1132.47601 NaN NaN NaN NaN NaN NaN NaN 27.723 1 31.354 30.854 31.854 3.6311 0 0 0 0.39242 1 3714 3714 10.824 4.1008 1 + 34415 30512 21965 21976 39435 39435 -0.08492531128126757 QYWCRSQY 8 Unmodified _QYWCRSQY_ 0 0 0 REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|14|1|sense REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 567.2466430664062 2 567.245283 1132.47601 NaN NaN NaN NaN NaN NaN NaN 27.838 1 31.47 30.97 31.97 3.6311 0 0 0 0.33027 1 3748 3748 26.884 5.137 1 + 34416 30512 21965 21976 39436 39436 -0.08492531128126757 QYWKKILYK 9 Unmodified _QYWKKILYK_ 0 0 0 REV__L1MC2_dup2295|chr6:110767831-110768870:+|1.2438415248420789|0.0078070273672057|7.32|150.0|26|3|sense REV__L1MC2_dup2295|chr6:110767831-110768870:+|1.2438415248420789|0.0078070273672057|7.32|150.0|26|3|sense MSMS UPN47_class_I_Rep_3 4 635.3696899414062 2 635.371341 1268.72813 NaN NaN NaN NaN NaN NaN NaN 94.202 1 97.609 97.109 98.109 3.4068 0 0 0 0.4007 1 23453 23453 0.52476 0 1 + 34417 26644 21966 21977 39437 39437 0.10451430224884461 QYWYWAIK 8 Unmodified _QYWYWAIK_ 0 0 0 REV__L1PA7_dup10349|chr12:46595295-46598256:-|1.2324648857549068|0.0225437215348513|5.77|149.0|85|3|sense REV__L1PA7_dup10349|chr12:46595295-46598256:-|1.2324648857549068|0.0225437215348513|5.77|149.0|85|3|sense MSMS UPN48_class_I_Rep_2 6 579.2925415039062 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 49.182 1 52.899 52.399 53.399 3.7175 0 0 0 0.40625 1 9909 9909 2.3027 0 1 + 34418 29630 21967 21978 39438 39438 -0.0014564931450422591 QYYKFVKLI 9 Unmodified _QYYKFVKLI_ 0 0 0 REV__Tigger7_dup1685|chr9:70196274-70198155:+|1.2899887724068118|0.4679433223378003|1.46|150.0|12|1|sense REV__Tigger7_dup1685|chr9:70196274-70198155:+|1.2899887724068118|0.4679433223378003|1.46|150.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 601.31591796875 2 601.352617 1200.69068 NaN NaN NaN NaN NaN NaN NaN 85.778 1 85.778 85.278 86.278 0 0 0 0 0.4007 1 20481 20481 0.52476 0 1 + 34419 32807 21968 21979 39439 39439 0.0983633895928051 QYYLVGWQF 9 Unmodified _QYYLVGWQF_ 0 0 0 ENST00000520545.5_1_8:99229439-99248416:-|nuORF;nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2 ENST00000520545.5_1_8:99229439-99248416:-|nuORF ENST00000520545.5_1_8:99229439-99248416:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 602.2976684570312 2 602.295299 1202.57605 0.60054 0.0003617 -0.032066 -1.9313E-05 0.56847 0.00034239 602.2951057199652 69.687 0.64617 73.2 72.995 73.641 3.5128 77 51 2 0 0 0 0.48846 1 16199 16199 1.8442 0 1 170110 34420 1685 21969 21980 39440 39440 -0.017139705226782098 QYYQFFLL 8 Unmodified _QYYQFFLL_ 0 0 0 REV__ENSG00000150048|ENST00000315330|CLEC1A REV__ENSG00000150048|ENST00000315330|CLEC1A MSMS UPN46_class_I_Rep_3 1 561.28662109375 2 561.286943 1120.55933 NaN NaN NaN NaN NaN NaN NaN 35.146 1 35.146 34.646 35.646 0 0 0 0 0.40738 1 6364 6364 0.79363 0 1 + 34421 19628 21970 21981 39441 39441 0.003875285913636617 QYYQRDTY 8 Unmodified _QYYQRDTY_ 0 0 0 L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|7|1|sense L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|7|1|sense L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.7523803710938 2 568.753995 1135.49344 -0.047015 -2.674E-05 0.12428 7.0686E-05 0.077268 4.3946E-05 568.7538688741405 37.708 0.61838 41.373 41.065 41.683 3.6652 60 45 2 0 0 0 0.82752 1 7131 7131 8.5933 1.304 1 86101 34422 9786 21971 21982 39442 39442 -0.06888912321483076 QYYQTWPY 8 Unmodified _QYYQTWPY_ 0 0 0 REV__nc|ENSG00000168778|Q96GX1-2|TCTN2 REV__nc|ENSG00000168778|Q96GX1-2|TCTN2 MSMS UPN47_class_I_Rep_3 4 574.7556762695312 2 574.756007 1147.49746 NaN NaN NaN NaN NaN NaN NaN 37.555 1 40.802 40.302 41.302 3.247 0 0 0 0.40746 1 7215 7215 0.69038 0 1 + 34423 20281 21972 21983 39443 39443 -0.0703882282775794 QYYVEQKW 8 Unmodified _QYYVEQKW_ 0 0 0 L1MB4_dup7150|chr15:63586086-63586382:-|2.217993979046721|0.3661954041915282|2.6|151.0|19|2|anti-sense;L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|274|2|anti-sense L1MB4_dup7150|chr15:63586086-63586382:-|2.217993979046721|0.3661954041915282|2.6|151.0|19|2|anti-sense L1MB4_dup7150|chr15:63586086-63586382:-|2.217993979046721|0.3661954041915282|2.6|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_3 4 572.2939453125 2 572.277106 1142.53966 NaN NaN NaN NaN NaN NaN NaN 32.589 1 35.876 35.376 36.376 3.2867 0 0 0 0.40643 1 5706 5706 2.0598 0.57785 1 34424 10566 21973 21984 39444 39444 -0.02590847419378406 QYYYAARPFAL 11 Unmodified _QYYYAARPFAL_ 0 0 0 ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14 ENST00000486564.5_1_2:31133891-31178528:-|nuORF ENST00000486564.5_1_2:31133891-31178528:-|nuORF MSMS UPN47_class_I_Rep_2 3 454.90045166015625 3 454.89955 1361.67682 NaN NaN NaN NaN NaN NaN NaN 14.666 1 18.053 17.553 18.553 3.3871 0 0 0 0.38417 1 623 623 1.4551 0.67859 1 34425 3787 21974 21985 39445 39445 0.010450614601495545 RAAELLRHK 9 Unmodified _RAAELLRHK_ 0 0 0 REV__MSTA-int_dup2122|chr10:75581940-75583233:-|5.838273106103786|0.0324062075780511|7.49|150.0|73|3|anti-sense REV__MSTA-int_dup2122|chr10:75581940-75583233:-|5.838273106103786|0.0324062075780511|7.49|150.0|73|3|anti-sense MSMS UPN47_class_I_Rep_1 2 547.8012084960938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 82.954 1 86.493 85.993 86.993 3.5386 0 0 0 0.3967 1 20735 20735 1.4819 0 1 + 34426 31857 21975 21986 39446 39446 0.10899051448268438 RAAIFWRR 8 Unmodified _RAAIFWRR_ 0 0 0 L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|266|3|anti-sense L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|266|3|anti-sense L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|266|3|anti-sense MSMS UPN47_class_I_Rep_1 2 538.161376953125 2 538.317235 1074.61992 NaN NaN NaN NaN NaN NaN NaN 12.737 1 16.187 15.687 16.687 3.45 0 0 0 0.40746 1 142 142 0.69038 0 1 34427 14680 21976 21987 39447 39447 0.08559103484981279 RAAKRYEQL 9 Unmodified _RAAKRYEQL_ 0 0 0 REV__L1MC4_dup20185|chr15:56973335-56974466:+|1.30140308525759|0.0155545765487621|6.39|151.0|77|3|anti-sense REV__L1MC4_dup20185|chr15:56973335-56974466:+|1.30140308525759|0.0155545765487621|6.39|151.0|77|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.8228149414062 2 567.822547 1133.63054 NaN NaN NaN NaN NaN NaN NaN 59.318 1 62.735 62.235 63.235 3.4171 0 0 0 0.37891 1 13765 13765 5.7319 0.83484 1 + 34428 26860 21977 21988 39448 39448 0.06907041348745224 RAALLEKR 8 Unmodified _RAALLEKR_ 0 0 0 nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MSMS UPN47_class_I_Rep_3 4 478.805908203125 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 64.73 1 67.91 67.41 68.41 3.1795 0 0 0 0.40643 1 15500 15500 2.0598 0 1 34429 2244 21978 21989 39449 39449 0.11312575153942817 RAAPAGRL 8 Unmodified _RAAPAGRL_ 0 0 0 ENST00000398061.5_1_21:45379519-45387977:+|nuORF ENST00000398061.5_1_21:45379519-45387977:+|nuORF ENST00000398061.5_1_21:45379519-45387977:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.24853515625 2 406.248486 810.48242 -0.1245 -5.0577E-05 0.60558 0.00024602 0.48109 0.00019544 406.24857606589825 83.026 0.068375 86.613 86.566 86.635 3.5871 9 6 2 0 0 0 0.82752 1 19850 19850 0.69038 0 1 574720 34430 6579 21979 21990 39450 39450 0.06959774885569914 RAAQTRIGAL 10 Unmodified _RAAQTRIGAL_ 0 0 0 REV__HERV9-int_dup117|chr7:37202715-37204174:-|4.163171206754798|0.065795383563829|5.98|151.0|53|1|anti-sense REV__HERV9-int_dup117|chr7:37202715-37204174:-|4.163171206754798|0.065795383563829|5.98|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_1 2 528.8165893554688 2 528.817264 1055.61998 NaN NaN NaN NaN NaN NaN NaN 89.585 1 93.259 92.759 93.759 3.6738 0 0 0 0.53105 1 22400 22400 1.6526 0.85899 1 + 34431 23601 21980 21991 39451 39451 0.09439058694306368 RAARPPAA 8 Unmodified _RAARPPAA_ 0 0 0 REV__ENST00000579674.1_1_17:27899162-27899804:+|nuORF REV__ENST00000579674.1_1_17:27899162-27899804:+|nuORF MSMS UPN48_class_I_Rep_1 5 405.23980712890625 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 91.237 1 94.863 94.363 95.363 3.626 0 0 0 0.40404 1 21924 21924 5.2307 0 1 + 34432 20223 21981 21992 39452 39452 0.05487488368498816 RAARPPAA 8 Unmodified _RAARPPAA_ 0 0 0 REV__ENST00000579674.1_1_17:27899162-27899804:+|nuORF REV__ENST00000579674.1_1_17:27899162-27899804:+|nuORF MSMS UPN48_class_I_Rep_2 6 405.2400207519531 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 91.435 1 95.19 94.69 95.69 3.7554 0 0 0 0.40404 1 21771 21771 5.2307 0 1 + 34433 20223 21981 21992 39453 39453 0.05487488368498816 RAARRGVGL 9 Unmodified _RAARRGVGL_ 0 0 0 REV__ENST00000446845.5_1_3:38207005-38207431:+|nuORF REV__ENST00000446845.5_1_3:38207005-38207431:+|nuORF MSMS UPN47_class_I_Rep_1 2 478.300537109375 2 478.299042 954.583531 NaN NaN NaN NaN NaN NaN NaN 67.93 1 71.295 70.795 71.795 3.3646 0 0 0 0.29868 1 16367 16367 10.824 1.4765 1 + 34434 22365 21982 21993 39454 39454 0.10442226588270387 RAAVLPARSL 10 Unmodified _RAAVLPARSL_ 0 0 0 L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|69|2|sense L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|69|2|sense L1PA5_dup3705|chr5:80428092-80433594:+|2.600610671769186|0.4598076668459001|2.5|151.0|69|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.3305053710938 2 527.330008 1052.64546 0.33325 0.00017573 -2.0342 -0.0010727 -1.701 -0.00089698 527.3289453725965 107.99 0.31145 107.99 107.93 108.24 0 38 22 2 0 0 0 0.48573 1 26412 26412 13.042 0 1 37528000 34435 14467 21983 21994 39455 39455 0.12124533216751843 RAAWRRGK 8 Unmodified _RAAWRRGK_ 0 0 0 REV__nc|ENSG00000186007|Q68G75-3|LEMD1 REV__nc|ENSG00000186007|Q68G75-3|LEMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 500.79827880859375 2 500.799209 999.583865 0.32524 0.00016288 -1.94 -0.00097153 -1.6147 -0.00080864 500.79819533147605 85.595 0.10417 89.028 89.011 89.116 3.4329 17 12 2 0 0 0 0.82752 1 21299 21299 5.2307 0 1 60721 + 34436 20870 21984 21995 39456 39456 0.08405646308119685 RADGNFLLY 9 Unmodified _RADGNFLLY_ 0 0 0 ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF;ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 MULTI-MSMS UPN47_class_I_Rep_1 2 534.7776489257812 2 534.777274 1067.53999 0.34679 0.00018546 -0.15243 -8.1516E-05 0.19436 0.00010394 534.7773506777324 56.114 2.4281 59.592 59.069 61.497 3.4785 450 175 5 0 0 0 0.011285 7 12825 12703;12742;12785;12825;12868;12908;12948 69.105 16.524 1 8299000 34437 1499 21985 21996 39457;39458;39459;39460;39461;39462;39463 39460 0.00892572300494976 RADGNFLLY 9 Unmodified _RADGNFLLY_ 0 0 0 ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF;ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 MULTI-MSMS UPN47_class_I_Rep_2 3 534.7776489257812 2 534.777274 1067.53999 0.44016 0.00023539 -0.27825 -0.0001488 0.1619 8.6582E-05 534.7772770277635 56.371 2.5223 59.672 59.137 61.66 3.3009 535 189 5 0 0 0 0.0061372 7 12900 12819;12858;12900;12942;12984;13022;13063 75.761 23.492 1 9928900 34438 1499 21985 21996 39464;39465;39466;39467;39468;39469;39470 39466 0.00892572300494976 RADGNFLLY 9 Unmodified _RADGNFLLY_ 0 0 0 ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF;ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 MULTI-MSMS UPN47_class_I_Rep_3 4 534.777587890625 2 534.777274 1067.53999 0.35866 0.0001918 -0.2292 -0.00012257 0.12946 6.9232E-05 534.7772723158613 56.608 2.4445 59.78 59.199 61.643 3.1721 535 183 5 0 0 0 0.0070866 8 12998 12912;12951;12998;13039;13079;13115;13147;13185 71.922 19.536 1 8371700 34439 1499 21985 21996 39471;39472;39473;39474;39475;39476;39477;39478 39473 0.00892572300494976 RAEFAFLF 8 Unmodified _RAEFAFLF_ 0 0 0 L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|42|1|anti-sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|42|1|anti-sense L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_2 3 500.76544189453125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 42.305 1 45.666 45.166 46.166 3.3611 0 0 0 0.40738 1 8613 8613 0.79363 0 1 34440 13751 21986 21997 39479 39479 0.018023926226987896 RAFDMRVH 8 Unmodified _RAFDMRVH_ 0 0 0 REV__nc|ENSG00000133124|O14654|IRS4 REV__nc|ENSG00000133124|O14654|IRS4 MULTI-MSMS UPN47_class_I_Rep_2 3 516.2643432617188 2 516.26381 1030.51307 0.27397 0.00014144 0.71437 0.0003688 0.98834 0.00051024 516.2642681305978 109.16 0.16094 112.69 112.64 112.8 3.5307 77 21 4 0 0 0 0.82752 1 26577 26577 2.3027 2.3027 1 10055000 + 34441 19052 21987 21998 39480 39480 -0.0009681479170922103 RAFDMRVH 8 Unmodified _RAFDMRVH_ 0 0 0 REV__nc|ENSG00000133124|O14654|IRS4 REV__nc|ENSG00000133124|O14654|IRS4 MULTI-MSMS UPN47_class_I_Rep_3 4 516.2644653320312 2 516.26381 1030.51307 0.34746 0.00017938 0.54604 0.0002819 0.8935 0.00046128 516.2642361173656 109.15 0.18274 112.69 112.63 112.81 3.5347 81 24 4 0 0 0 0.82752 1 26803 26803 2.3027 2.3027 1 8993200 + 34442 19052 21987 21998 39481 39481 -0.0009681479170922103 RAFDQKLIF 9 Unmodified _RAFDQKLIF_ 0 0 0 nc|ENSG00000163840|Q8TDB6-2|DTX3L;ENSG00000163840|ENST00000296161|DTX3L nc|ENSG00000163840|Q8TDB6-2|DTX3L nc|ENSG00000163840|Q8TDB6-2|DTX3L MSMS UPN48_class_I_Rep_1 5 569.324462890625 2 569.324391 1136.63423 NaN NaN NaN NaN NaN NaN NaN 51.562 1 55.085 54.585 55.585 3.5227 0 0 0 0.27207 1 10648 10648 12.241 0.60036 1 34443 4050 21988 21999 39482 39482 0.07137711122595647 RAFDQKLIF 9 Unmodified _RAFDQKLIF_ 0 0 0 nc|ENSG00000163840|Q8TDB6-2|DTX3L;ENSG00000163840|ENST00000296161|DTX3L nc|ENSG00000163840|Q8TDB6-2|DTX3L nc|ENSG00000163840|Q8TDB6-2|DTX3L MSMS UPN48_class_I_Rep_3 7 569.3247680664062 2 569.324391 1136.63423 NaN NaN NaN NaN NaN NaN NaN 51.553 1 55.164 54.664 55.664 3.6105 0 0 0 0.3967 1 10577 10577 1.4819 0.79152 1 34444 4050 21988 21999 39483 39483 0.07137711122595647 RAFFFFFCS 9 Unmodified _RAFFFFFCS_ 0 0 0 L1ME1_dup16481|chr9:77965368-77966353:+|1.702005041101443|0.0689667547290607|4.63|151.0|56|2|anti-sense L1ME1_dup16481|chr9:77965368-77966353:+|1.702005041101443|0.0689667547290607|4.63|151.0|56|2|anti-sense L1ME1_dup16481|chr9:77965368-77966353:+|1.702005041101443|0.0689667547290607|4.63|151.0|56|2|anti-sense MSMS UPN48_class_I_Rep_3 7 586.2734375 2 586.273312 1170.53207 NaN NaN NaN NaN NaN NaN NaN 22.044 1 25.758 25.258 26.258 3.7144 0 0 0 0.40038 1 2186 2186 0.6015 0 1 34445 12248 21989 22000 39484 39484 -0.046372782206390184 RAFHPDLEF 9 Unmodified _RAFHPDLEF_ 0 0 0 nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2 nc|ENSG00000134824|O95864-3|FADS2 nc|ENSG00000134824|O95864-3|FADS2 MULTI-MSMS UPN48_class_I_Rep_1 5 566.2826538085938 2 566.282723 1130.55089 0.41776 0.00023657 -0.13221 -7.4867E-05 0.28555 0.0001617 566.2824548028311 49.719 1.3597 53.243 52.465 53.825 3.5246 189 91 3 0 0 0 0.15547 7 10096 10009;10056;10096;10137;10184;10215;10233 24.991 16.149 1 455560 34446 2870 21990 22001 39485;39486;39487;39488;39489;39490;39491 39487 -0.009160253252503026 RAFHPDLEF 9 Unmodified _RAFHPDLEF_ 0 0 0 nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2 nc|ENSG00000134824|O95864-3|FADS2 nc|ENSG00000134824|O95864-3|FADS2 MULTI-MSMS UPN48_class_I_Rep_2 6 566.2825927734375 2 566.282723 1130.55089 0.43078 0.00024394 -0.052262 -2.9595E-05 0.37852 0.00021435 566.2824589685572 49.517 1.2618 53.211 52.474 53.735 3.6946 200 81 3 0 0 0 0.11355 7 10039 9911;9953;9998;10039;10081;10127;10172 31.268 13.691 1 489200 34447 2870 21990 22001 39492;39493;39494;39495;39496;39497;39498 39495 -0.009160253252503026 RAFHPDLEF 9 Unmodified _RAFHPDLEF_ 0 0 0 nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2 nc|ENSG00000134824|O95864-3|FADS2 nc|ENSG00000134824|O95864-3|FADS2 MULTI-MSMS UPN48_class_I_Rep_3 7 566.2826538085938 2 566.282723 1130.55089 0.34476 0.00019523 -0.068687 -3.8896E-05 0.27607 0.00015634 566.2824571619657 49.647 1.2475 53.276 52.561 53.808 3.6291 198 85 3 0 0 0 0.11355 6 10073 9912;9955;9991;10032;10073;10123 31.268 21.194 1 480770 34448 2870 21990 22001 39499;39500;39501;39502;39503;39504 39503 -0.009160253252503026 RAFLFVFI 8 Unmodified _RAFLFVFI_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MSMS UPN48_class_I_Rep_3 7 506.802490234375 2 506.802563 1011.59057 NaN NaN NaN NaN NaN NaN NaN 57.949 1 61.481 60.981 61.981 3.5317 0 0 0 0.4032 1 12513 12513 6.3541 0 1 + 34449 19459 21991 22002 39505 39505 0.08524146416129952 RAFPIYIT 8 Unmodified _RAFPIYIT_ 0 0 0 REV__nc|ENSG00000175455|Q49A88-2|CCDC14 REV__nc|ENSG00000175455|Q49A88-2|CCDC14 MSMS UPN48_class_I_Rep_3 7 490.7815856933594 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 76.868 1 80.47 79.97 80.97 3.6016 0 0 0 0.40746 1 18122 18122 0.69038 0 1 + 34450 20555 21992 22003 39506 39506 0.05850965656793505 RAFPNKQGY 9 Unmodified _RAFPNKQGY_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN46_class_I_Rep_3 1 540.7826538085938 2 540.78289 1079.55123 0.040177 2.1727E-05 -0.12487 -6.7527E-05 -0.084693 -4.58E-05 540.782750486563 27.174 1.0561 27.174 26.633 27.689 0 99 80 2 0 0 0 0.35081 4 3953 3893;3901;3953;4014 10.824 4.9865 1 84160 34451 3672 21993 22004 39507;39508;39509;39510 39509 0.014633943946137151 RAFQRKRQLVW 11 Unmodified _RAFQRKRQLVW_ 0 0 0 HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|196|1|anti-sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|196|1|anti-sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|196|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 495.9590759277344 3 496.628388 1486.86333 0.25267 0.00012548 1.1062 0.00054936 1.3588 0.00067484 496.6282509845208 95.903 0.23446 99.812 99.766 100 3.9084 50 32 3 0 0 0 22.551 1 22746 22746 0.45452 0 1 134780 34452 8183 21994 22005 39511 39511 0.13937723139201807 RAFQRKRQLVW 11 Unmodified _RAFQRKRQLVW_ 0 0 0 HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|196|1|anti-sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|196|1|anti-sense HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|196|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 496.628388 1486.86333 0.30699 0.00015246 -0.2016 -0.00010012 0.10539 5.2338E-05 496.62818735003174 100.05 0.037033 100.05 100.01 100.05 0 0.11708 -0.0014695 NaN 0.45452 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 220260 34453 8183 21994 22005 0.13937723139201807 RAFQSNCY 8 Unmodified _RAFQSNCY_ 0 0 0 ENSG00000166527|ENST00000299665|CLEC4D ENSG00000166527|ENST00000299665|CLEC4D ENSG00000166527|ENST00000299665|CLEC4D MSMS UPN47_class_I_Rep_1 2 494.7292175292969 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 115.17 1 118.75 118.25 119.25 3.5809 0 0 0 0.40604 1 28485 28485 2.5775 0.27475 1 34454 4248 21995 22006 39512 39512 -0.07096489190939792 RAFRSSAASAG 11 Unmodified _RAFRSSAASAG_ 0 0 0 REV__ENST00000344823.9_1_16:3451270-3451549:+|nuORF REV__ENST00000344823.9_1_16:3451270-3451549:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.78076171875 2 540.780879 1079.5472 -0.067517 -3.6512E-05 -0.49825 -0.00026945 -0.56577 -0.00030596 540.7805878432329 23.045 0.6679 26.749 26.392 27.06 3.7042 81 59 2 0 0 0 0.65559 1 2766 2766 2.7352 0.15772 1 65414 + 34455 21841 21996 22007 39513 39513 0.010613049008952657 RAFVPQLR 8 Unmodified _RAFVPQLR_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF ENSG00000127616|ENST00000344626|SMARCA4 ENSG00000127616|ENST00000344626|SMARCA4 MULTI-MSMS UPN46_class_I_Rep_3 1 493.79864501953125 2 493.798343 985.582134 0.29233 0.00014435 -0.59417 -0.0002934 -0.30184 -0.00014905 493.7980963264605 41.662 0.2011 41.662 41.577 41.779 0 36 24 2 0 0 0 0.82752 1 8204 8204 19.257 3.4098 1 156990 34456 2570 21997 22008 39514 39514 0.08876592499507296 RAFVPQLR 8 Unmodified _RAFVPQLR_ 0 0 0 ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF ENSG00000127616|ENST00000344626|SMARCA4 ENSG00000127616|ENST00000344626|SMARCA4 MSMS UPN46_class_I_Rep_3 1 493.7979736328125 2 493.798343 985.582134 NaN NaN NaN NaN NaN NaN NaN 41.533 1 41.533 41.033 42.033 0 0 0 0 0.37681 1 8152 8152 15.847 2.8047 1 34457 2570 21997 22008 39515 39515 0.08876592499507296 RAFWFLEFS 9 Unmodified _RAFWFLEFS_ 0 0 0 L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|181|3|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|181|3|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|181|3|anti-sense MSMS UPN48_class_I_Rep_1 5 601.8038940429688 2 601.803291 1201.59203 NaN NaN NaN NaN NaN NaN NaN 38.451 1 41.956 41.456 42.456 3.5052 0 0 0 0.39598 1 6664 6664 1.6526 0.17072 1 34458 13491 21998 22009 39516 39516 -0.0007026428577319166 RAGAVLRM 8 Unmodified _RAGAVLRM_ 0 0 0 ENST00000532554.5_1_11:45935680-45939362:-|nuORF ENST00000532554.5_1_11:45935680-45939362:-|nuORF ENST00000532554.5_1_11:45935680-45939362:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.2577819824219 2 437.257997 872.501441 NaN NaN NaN NaN NaN NaN NaN 89.539 1 93.165 92.665 93.665 3.6255 0 0 0 0.40625 1 21506 21506 2.3027 0 1 34459 7302 21999 22010 39517 39517 0.060089881849762605 RAGFIIVGH 9 Unmodified _RAGFIIVGH_ 0 0 0 REV__nc|ENSG00000204248|P13942-9|COL11A2 REV__nc|ENSG00000204248|P13942-9|COL11A2 MSMS UPN48_class_I_Rep_1 5 485.2857971191406 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 37.561 1 41.066 40.566 41.566 3.5052 0 0 0 0.39518 1 6401 6401 1.8442 0 1 + 34460 21183 22000 22011 39518 39518 0.07004903608185487 RAGFIIVGH 9 Unmodified _RAGFIIVGH_ 0 0 0 REV__nc|ENSG00000204248|P13942-9|COL11A2 REV__nc|ENSG00000204248|P13942-9|COL11A2 MSMS UPN48_class_I_Rep_1 5 485.2859191894531 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 42.752 1 46.26 45.76 46.76 3.5079 0 0 0 0.38299 1 7944 7944 4.756 0 1 + 34461 21183 22000 22011 39519 39519 0.07004903608185487 RAGGDGRPHA 10 Unmodified _RAGGDGRPHA_ 0 0 0 ENST00000369501.2_1_6:88875944-88876034:-|nuORF ENST00000369501.2_1_6:88875944-88876034:-|nuORF ENST00000369501.2_1_6:88875944-88876034:-|nuORF MSMS UPN48_class_I_Rep_2 6 497.25335693359375 2 497.252289 992.490024 NaN NaN NaN NaN NaN NaN NaN 33.903 1 37.564 37.064 38.064 3.6607 0 0 0 0.53105 1 5403 5403 1.1933 0 1 34462 6373 22001 22012 39520 39520 -0.006521175848092753 RAGKHWGIA 9 Unmodified _RAGKHWGIA_ 0 0 0 ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF;ENSG00000089057|ENST00000338244|SLC23A2 ENST00000496331.1_1_20:4854564-4866632:-|nuORF ENST00000496331.1_1_20:4854564-4866632:-|nuORF MSMS UPN48_class_I_Rep_1 5 498.2922058105469 2 498.280318 994.546083 NaN NaN NaN NaN NaN NaN NaN 53.297 1 56.817 56.317 57.317 3.5192 0 0 0 0.36505 1 11172 11172 7.2892 0 1 34463 7099 22002 22013 39521 39521 0.04859135322658403 RAGLFPGFRI 10 Unmodified _RAGLFPGFRI_ 0 0 0 ENST00000472942.5_1_9:133986989-133989557:+|nuORF ENST00000472942.5_1_9:133986989-133989557:+|nuORF ENST00000472942.5_1_9:133986989-133989557:+|nuORF MSMS UPN48_class_I_Rep_1 5 567.3320922851562 2 567.33255 1132.65055 NaN NaN NaN NaN NaN NaN NaN 81.146 1 84.709 84.209 85.209 3.5624 0 0 0 0.53105 1 19344 19344 1.4819 0.15237 1 34464 6937 22003 22014 39522 39522 0.08952837079368692 RAGPPRVG 8 Unmodified _RAGPPRVG_ 0 0 0 REV__nc|ENSG00000159899|P20594-2|NPR2 REV__nc|ENSG00000159899|P20594-2|NPR2 MULTI-MSMS UPN48_class_I_Rep_3 7 405.24139404296875 2 405.240661 808.46677 0.14116 5.7205E-05 -0.00027226 -1.1033E-07 0.14089 5.7095E-05 405.2406115865811 76.416 1.2118 79.999 79.411 80.622 3.5831 285 132 3 0 0 0 0.82752 1 17867 17867 2.3027 0 1 957790 + 34465 19873 22004 22015 39523 39523 0.054874883685215536 RAGRRVFAV 9 Unmodified _RAGRRVFAV_ 0 0 0 ENST00000359570.9_1_2:234116149-234116401:+|nuORF ENST00000359570.9_1_2:234116149-234116401:+|nuORF ENST00000359570.9_1_2:234116149-234116401:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 516.816650390625 2 516.314692 1030.61483 0.34909 0.00018024 -1.1787 -0.00060858 -0.82961 -0.00042834 516.3138982158375 107.29 0.12428 110.97 110.91 111.04 3.6813 13 7 3 0 0 0 0.41259 1 25292 25292 7.2892 0 1 592580 34466 6309 22005 22016 39524 39524 0.10074799622361752 RAGRRVFAV 9 Unmodified _RAGRRVFAV_ 0 0 0 ENST00000359570.9_1_2:234116149-234116401:+|nuORF ENST00000359570.9_1_2:234116149-234116401:+|nuORF ENST00000359570.9_1_2:234116149-234116401:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 516.314692 1030.61483 0.27598 0.00014249 -0.578 -0.00029843 -0.30202 -0.00015594 516.3144195830623 107.45 0.028229 110.98 110.96 110.99 3.5345 0.0068166 0.00049188 NaN 7.2892 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1169000 34467 6309 22005 22016 0.10074799622361752 RAGRVPVG 8 Unmodified _RAGRVPVG_ 0 0 0 REV__nc|ENSG00000167645|Q5BJH7-2|YIF1B REV__nc|ENSG00000167645|Q5BJH7-2|YIF1B MULTI-MSMS UPN47_class_I_Rep_3 4 406.24896240234375 2 406.248486 810.48242 -0.62665 -0.00025457 0.95214 0.00038681 0.32549 0.00013223 406.2488408147207 88.063 0.10391 91.45 91.435 91.539 3.3873 14 9 2 0 0 0 0.82752 1 22091 22091 0.79363 0 1 105310 + 34468 20228 22006 22017 39525 39525 0.06959774885569914 RAGSVRVKG 9 Unmodified _RAGSVRVKG_ 0 0 0 REV__nc|ENSG00000115159|P43304-2|GPD2 REV__nc|ENSG00000115159|P43304-2|GPD2 MSMS UPN48_class_I_Rep_1 5 465.2855224609375 2 465.2856 928.556647 NaN NaN NaN NaN NaN NaN NaN 80.723 1 84.286 83.786 84.786 3.5624 0 0 0 0.39598 1 19239 19239 1.6526 0.85899 1 + 34469 18544 22007 22018 39526 39526 0.08951117977096601 RAGVEGVFARL 11 Unmodified _RAGVEGVFARL_ 0 0 0 REV__nc|ENSG00000160282|O95954-3|FTCD REV__nc|ENSG00000160282|O95954-3|FTCD MSMS UPN48_class_I_Rep_2 6 587.8211669921875 2 587.838197 1173.66184 NaN NaN NaN NaN NaN NaN NaN 62.303 1 65.777 65.277 66.277 3.4738 0 0 0 0.38417 1 13912 13912 4.5289 0.93237 1 + 34470 32029 22008 22019 39527 39527 0.08195614382839267 RAGVPGVR 8 Unmodified _RAGVPGVR_ 0 0 0 REV__nc|ENSG00000114439|Q8WY36-3|BBX REV__nc|ENSG00000114439|Q8WY36-3|BBX MSMS UPN47_class_I_Rep_3 4 406.248779296875 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 84.853 1 88.215 87.715 88.715 3.3615 0 0 0 0.40625 1 21294 21294 2.3027 0 1 + 34471 31964 22009 22020 39528 39528 0.06959774885569914 RAHKAQLLR 9 Unmodified _RAHKAQLLR_ 0 0 0 nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK nc|ENSG00000234616|O75564|JRK nc|ENSG00000234616|O75564|JRK MSMS UPN46_class_I_Rep_3 1 546.840576171875 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 96.246 1 96.246 95.746 96.746 0 0 0 0 0.39518 1 23397 23397 1.8442 0.36234 1 34472 5686 22010 22021 39529 39529 0.12542757685150718 RAHLWHRHQ 9 Unmodified _RAHLWHRHQ_ 0 0 0 REV__MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|38|1|anti-sense REV__MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_1 5 620.8318481445312 2 620.831572 1239.64859 NaN NaN NaN NaN NaN NaN NaN 70.318 1 73.777 73.277 74.277 3.4598 0 0 0 0.4007 1 16378 16378 0.52476 0 1 + 34473 31417 22011 22022 39530 39530 0.038352211141273074 RAHRDWYHR 9 Unmodified _RAHRDWYHR_ 0 0 0 nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1;ENSG00000110536|ENST00000326674|PTPMT1 nc|ENSG00000110536|Q8WUK0-2|PTPMT1 nc|ENSG00000110536|Q8WUK0-2|PTPMT1 MSMS UPN48_class_I_Rep_3 7 432.8851013183594 3 432.88675 1295.63842 NaN NaN NaN NaN NaN NaN NaN 71.546 1 75.073 74.573 75.573 3.5266 0 0 0 0.39887 1 16623 16623 0.96228 0.18574 1 34474 1944 22012 22023 39531 39531 0.0024261338885480654 RAHRSSARRT 10 Unmodified _RAHRSSARRT_ 0 0 0 L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|118|3|sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|118|3|sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|118|3|sense MSMS UPN48_class_I_Rep_3 7 599.336181640625 2 599.337218 1196.65988 NaN NaN NaN NaN NaN NaN NaN 73.808 1 77.359 76.859 77.859 3.5505 0 0 0 0.53105 1 17283 17283 2.9952 0.93549 1 34475 14895 22013 22024 39532 39532 0.06941998417596551 RAIDFSPYL 9 Unmodified _RAIDFSPYL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS UPN46_class_I_Rep_3 1 541.287841796875 2 541.287474 1080.5604 0.31586 0.00017097 -0.076022 -4.115E-05 0.23984 0.00012982 541.2872794110338 68.691 0.376 68.691 68.481 68.857 0 53 36 2 0 0 0 0.062142 1 15689 15689 43.772 5.7984 1 178910 34476 4566 22014 22025 39533 39533 0.023337429602634074 RAIDYVQRQ 9 Unmodified _RAIDYVQRQ_ 0 0 0 nc|ENSG00000140391|O60637-3|TSPAN3;nc|ENSG00000140391|O60637-2|TSPAN3;ENSG00000140391|ENST00000267970|TSPAN3 nc|ENSG00000140391|O60637-3|TSPAN3 nc|ENSG00000140391|O60637-3|TSPAN3 MULTI-MSMS UPN46_class_I_Rep_3 1 574.8126220703125 2 574.812179 1147.60981 0.22994 0.00013217 -0.13373 -7.6868E-05 0.096217 5.5307E-05 574.8120957012337 29.959 0.8632 29.959 29.641 30.504 0 160 71 3 0 0 0 0.43982 1 4908 4908 5.7319 2.1354 1 252830 34477 3171 22015 22026 39534 39534 0.04190450969099402 RAIEDPILAY 10 Unmodified _RAIEDPILAY_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS UPN48_class_I_Rep_1 5 580.8192138671875 2 580.819138 1159.62372 0.50247 0.00029184 -0.030742 -1.7855E-05 0.47173 0.00027399 580.8190647596333 57.154 0.91819 60.648 60.211 61.129 3.4942 226 78 4 0 0 0 0.25045 6 12297 12259;12268;12297;12305;12340;12376 38.615 12.347 1 1149000 34478 2972 22016 22027 39535;39536;39537;39538;39539;39540 39537 0.05029683677526009 RAIEDPILAY 10 Unmodified _RAIEDPILAY_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS UPN48_class_I_Rep_2 6 580.8195190429688 2 580.819138 1159.62372 0.58651 0.00034066 -0.084603 -4.9139E-05 0.50191 0.00029152 580.8190338733949 57.055 1.0352 60.57 60.165 61.2 3.5142 227 88 4 0 0 0 0.31534 4 12353 12235;12274;12314;12353 28.495 11.382 1 1060100 34479 2972 22016 22027 39541;39542;39543;39544 39544 0.05029683677526009 RAIEDPILAY 10 Unmodified _RAIEDPILAY_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS UPN48_class_I_Rep_3 7 580.8194580078125 2 580.819138 1159.62372 0.404 0.00023465 0.13154 7.6401E-05 0.53554 0.00031105 580.8191563824441 56.892 1.0242 60.435 60.124 61.148 3.5427 273 100 4 0 0 0 0.31534 5 12235 12125;12131;12164;12197;12235 28.495 11.382 1 1117500 34480 2972 22016 22027 39545;39546;39547;39548;39549 39549 0.05029683677526009 RAIELWYHD 9 Unmodified _RAIELWYHD_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MSMS UPN48_class_I_Rep_3 7 601.803466796875 2 601.80128 1201.58801 NaN NaN NaN NaN NaN NaN NaN 33.49 1 37.17 36.67 37.67 3.6797 0 0 0 0.39428 1 5214 5214 2.0598 0.21551 1 34481 2647 22017 22028 39550 39550 -0.004723537794689037 RAIHAFYFIF 10 Unmodified _RAIHAFYFIF_ 0 0 0 L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|58|2|anti-sense L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|58|2|anti-sense L1ME2_dup5536|chr7:30589220-30590357:+|1.1496702766176488|0.1590886971393645|2.85|150.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 642.8479614257812 2 642.848033 1283.68151 NaN NaN NaN NaN NaN NaN NaN 92.061 1 95.687 95.187 96.187 3.626 0 0 0 0.53105 1 22129 22129 1.8442 0.36234 1 34482 12506 22018 22029 39551 39551 0.05101990393586675 RAINIALQL 9 Unmodified _RAINIALQL_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS UPN48_class_I_Rep_2 6 506.31903076171875 2 506.319109 1010.62366 0.36588 0.00018525 -0.31076 -0.00015735 0.055115 2.7906E-05 506.31889455567534 61.483 0.68593 64.956 64.658 65.344 3.4738 90 56 2 0 0 0 0.074399 2 13630 13630;13665 39.95 3.8227 1 333940 34483 4571 22019 22030 39552;39553 39552 0.11877728468175519 RAIPRSPGS 9 Unmodified _RAIPRSPGS_ 0 0 0 ENST00000489867.1_3_1:8938869-8939151:-|nuORF ENST00000489867.1_3_1:8938869-8939151:-|nuORF ENST00000489867.1_3_1:8938869-8939151:-|nuORF MSMS UPN47_class_I_Rep_2 3 470.77081298828125 2 470.769783 939.525013 NaN NaN NaN NaN NaN NaN NaN 44.029 1 47.387 46.887 47.887 3.358 0 0 0 0.39598 1 9141 9141 1.6526 0 1 34484 7060 22020 22031 39554 39554 0.05283125223149909 RAIRTLIHCW 10 Unmodified _RAIRTLIHCW_ 0 0 0 L1ME3A_dup10551|chr11:73840834-73841778:+|1.2349841892213815|0.2837010979557146|2.12|151.0|24|2|sense L1ME3A_dup10551|chr11:73840834-73841778:+|1.2349841892213815|0.2837010979557146|2.12|151.0|24|2|sense L1ME3A_dup10551|chr11:73840834-73841778:+|1.2349841892213815|0.2837010979557146|2.12|151.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 634.85595703125 2 634.855867 1267.69718 NaN NaN NaN NaN NaN NaN NaN 82.434 1 86.103 85.603 86.603 3.669 0 0 0 0.53105 1 19581 19581 1.4819 0 1 34485 12620 22021 22032 39555 39555 0.0740395363902735 RAIYGKPTVNI 11 Unmodified _RAIYGKPTVNI_ 0 0 0 L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|7|1|sense L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|7|1|sense L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 411.243896484375 3 411.243429 1230.70846 0.082146 3.3782E-05 0.44606 0.00018344 0.5282 0.00021722 411.2435270063762 91.351 0.39909 95.106 94.842 95.241 3.7554 99 60 2 0 0 0 0.54468 1 21761 21761 6.6235 0.43161 1 6138800 34486 14390 22022 22033 39556 39556 0.10233054214131698 RAIYGKPTVNI 11 Unmodified _RAIYGKPTVNI_ 0 0 0 L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|7|1|sense L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|7|1|sense L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 411.24359130859375 3 411.243429 1230.70846 0.10683 4.3934E-05 0.35416 0.00014565 0.46099 0.00018958 411.24353241409034 91.232 0.50697 95.096 94.831 95.338 3.8634 109 75 2 0 0 0 0.58817 1 21642 21642 5.5233 1.9362 1 7234000 34487 14390 22022 22033 39557 39557 0.10233054214131698 RAKFGKKV 8 Unmodified _RAKFGKKV_ 0 0 0 REV__ENST00000568399.1_1_1:25631264-25663698:-|nuORF REV__ENST00000568399.1_1_1:25631264-25663698:-|nuORF MSMS UPN48_class_I_Rep_3 7 467.2957458496094 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 83.873 1 87.601 87.101 88.101 3.7281 0 0 0 0.40625 1 19895 19895 2.3027 0 1 + 34488 23077 22023 22034 39558 39558 0.12297780504900402 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7960510253906 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 60.507 1 63.889 63.389 64.389 3.3815 0 0 0 0.40604 1 14126 14126 2.5775 0 1 + 34489 22152 22024 22035 39559 39559 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.79571533203125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 63.632 1 66.988 66.488 67.488 3.3557 0 0 0 0.40604 1 15068 15068 2.5775 0 1 + 34490 22152 22024 22035 39560 39560 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7957763671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 71.236 1 74.611 74.111 75.111 3.3751 0 0 0 0.40604 1 17356 17356 2.5775 0 1 + 34491 22152 22024 22035 39561 39561 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 72.123 1 75.503 75.003 76.003 3.3799 0 0 0 0.40604 1 17628 17628 2.5775 0 1 + 34492 22152 22024 22035 39562 39562 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 99.069 1 102.86 102.36 103.36 3.7926 0 0 0 0.40604 1 24508 24508 2.5775 0 1 + 34493 22152 22024 22035 39563 39563 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 49.683 1 53.026 52.526 53.526 3.3431 0 0 0 0.40157 1 10854 10854 7.2892 0 1 + 34494 22152 22024 22035 39564 39564 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 60.659 1 63.925 63.425 64.425 3.2654 0 0 0 0.40604 1 14208 14208 2.5775 0 1 + 34495 22152 22024 22035 39565 39565 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.79559326171875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 63.629 1 66.884 66.384 67.384 3.2556 0 0 0 0.40604 1 15108 15108 2.5775 0 1 + 34496 22152 22024 22035 39566 39566 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.862 1 71.126 70.626 71.626 3.2636 0 0 0 0.40604 1 16390 16390 2.5775 0 1 + 34497 22152 22024 22035 39567 39567 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7957763671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 73.031 1 76.328 75.828 76.828 3.2971 0 0 0 0.40604 1 17934 17934 2.5775 0 1 + 34498 22152 22024 22035 39568 39568 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 78.753 1 82.109 81.609 82.609 3.3554 0 0 0 0.40604 1 19574 19574 2.5775 0 1 + 34499 22152 22024 22035 39569 39569 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 98.207 1 101.69 101.19 102.19 3.4836 0 0 0 0.40604 1 24085 24085 2.5775 0 1 + 34500 22152 22024 22035 39570 39570 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 471.7954406738281 2 471.795801 941.577048 -0.10636 -5.018E-05 -0.1053 -4.9681E-05 -0.21166 -9.9861E-05 471.79547226084213 58.856 0.56566 62.022 61.818 62.384 3.1658 42 32 2 0 0 0 0.82752 1 13765 13765 2.5775 0 1 383670 + 34501 22152 22024 22035 39571 39571 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 56.39 1 59.562 59.062 60.062 3.1721 0 0 0 0.40604 1 12959 12959 2.5775 0 1 + 34502 22152 22024 22035 39572 39572 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 60.586 1 63.751 63.251 64.251 3.1651 0 0 0 0.40604 1 14237 14237 2.5775 0 1 + 34503 22152 22024 22035 39573 39573 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.078 1 64.243 63.743 64.743 3.1651 0 0 0 0.40604 1 14384 14384 2.5775 0 1 + 34504 22152 22024 22035 39574 39574 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.405 1 64.57 64.07 65.07 3.1654 0 0 0 0.40604 1 14483 14483 2.5775 0 1 + 34505 22152 22024 22035 39575 39575 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 62.699 1 65.868 65.368 66.368 3.1698 0 0 0 0.40604 1 14883 14883 2.5775 0 1 + 34506 22152 22024 22035 39576 39576 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.79583740234375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 68.062 1 71.259 70.759 71.759 3.1977 0 0 0 0.40604 1 16515 16515 2.5775 0 1 + 34507 22152 22024 22035 39577 39577 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 69.151 1 72.355 71.855 72.855 3.2044 0 0 0 0.40604 1 16846 16846 2.5775 0 1 + 34508 22152 22024 22035 39578 39578 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 71.018 1 74.229 73.729 74.729 3.2113 0 0 0 0.40604 1 17406 17406 2.5775 0 1 + 34509 22152 22024 22035 39579 39579 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 73.96 1 77.197 76.697 77.697 3.2363 0 0 0 0.40604 1 18290 18290 2.5775 0 1 + 34510 22152 22024 22035 39580 39580 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.79571533203125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 75.799 1 79.056 78.556 79.556 3.2573 0 0 0 0.40604 1 18823 18823 2.5775 0 1 + 34511 22152 22024 22035 39581 39581 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.79510498046875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.785 1 92.178 91.678 92.678 3.3931 0 0 0 0.40604 1 22267 22267 2.5775 0 1 + 34512 22152 22024 22035 39582 39582 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 92.761 1 96.165 95.665 96.665 3.4034 0 0 0 0.40604 1 23150 23150 2.5775 0 1 + 34513 22152 22024 22035 39583 39583 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 98.186 1 101.61 101.11 102.11 3.4216 0 0 0 0.40604 1 24321 24321 2.5775 0 1 + 34514 22152 22024 22035 39584 39584 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 98.334 1 101.77 101.27 102.27 3.4328 0 0 0 0.40604 1 24357 24357 2.5775 0 1 + 34515 22152 22024 22035 39585 39585 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN48_class_I_Rep_1 5 471.7952880859375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 106.33 1 109.96 109.46 110.46 3.6277 0 0 0 0.40604 1 25622 25622 2.5775 0 1 + 34516 22152 22024 22035 39586 39586 0.10392288636899139 RAKGERLI 8 Unmodified _RAKGERLI_ 0 0 0 REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF REV__ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN48_class_I_Rep_3 7 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 76.065 1 79.648 79.148 80.148 3.5831 0 0 0 0.40604 1 17902 17902 2.5775 0 1 + 34517 22152 22024 22035 39587 39587 0.10392288636899139 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 436.7748107910156 2 436.774868 871.535184 0.10504 4.5878E-05 -0.14227 -6.2142E-05 -0.037235 -1.6263E-05 436.77478313900275 81.533 0.7907 85.189 84.707 85.498 3.6567 323 98 4 0 0 0 0.82752 1 19257 19257 0 0 1 9635600 + 34518 19820 22025 22036 39588 39588 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 436.774868 871.535184 0.15041 6.5696E-05 -0.41953 -0.00018324 -0.26912 -0.00011754 436.7746761960115 85.343 0.16331 85.343 85.289 85.452 0 0.083769 -0.0001836 NaN 0 59 14 5 NaN NaN NaN NaN 0 NaN NaN 0 9887500 + 34519 19820 22025 22036 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 436.774868 871.535184 0.076446 3.339E-05 -0.22064 -9.6369E-05 -0.14419 -6.2979E-05 436.77474464570525 81.808 1.3103 85.32 84.892 86.202 3.5122 0.060232 -9.8539E-06 NaN 0 405 149 4 NaN NaN NaN NaN 0 NaN NaN 0 5667700 + 34520 19820 22025 22036 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 436.774868 871.535184 0.10504 4.5878E-05 -0.14227 -6.2142E-05 -0.037235 -1.6263E-05 436.77478313900275 81.533 0.7907 85.189 84.707 85.498 3.6567 -0.070378 5.8601E-05 NaN 0 323 98 4 NaN NaN NaN NaN 0 NaN NaN 0 9635600 + 34521 19820 22025 22036 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron REV__ENSG00000157303.11,SUSD3,chr9,+,I3.1,93075973,93077845|31|5.42|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 436.774868 871.535184 0.17303 7.5575E-05 -0.21618 -9.4423E-05 -0.043153 -1.8848E-05 436.7747450560216 81.501 1.4886 85.186 84.769 86.257 3.685 -0.073623 -5.9625E-06 NaN 0 466 188 4 NaN NaN NaN NaN 0 NaN NaN 0 8644700 + 34522 19820 22025 22036 0.09427732948347511 RAKHPFVI 8 Unmodified _RAKHPFVI_ 0 0 0 REV__L1M3b_dup267|chr7:92875161-92876288:+|1.9364377999533997|0.0036366502853303|9.06|148.0|73|3|anti-sense REV__L1M3b_dup267|chr7:92875161-92876288:+|1.9364377999533997|0.0036366502853303|9.06|148.0|73|3|anti-sense MSMS UPN48_class_I_Rep_1 5 484.2945556640625 2 484.295436 966.57632 NaN NaN NaN NaN NaN NaN NaN 32.133 1 35.659 35.159 36.159 3.5266 0 0 0 0.40738 1 4847 4847 0.79363 0 1 + 34523 24316 22026 22037 39589 39589 0.09169493987849364 RAKIPPRP 8 Unmodified _RAKIPPRP_ 0 0 0 REV__ENST00000606089.1_1_5:133340855-133341212:+|nuORF REV__ENST00000606089.1_1_5:133340855-133341212:+|nuORF MSMS UPN47_class_I_Rep_2 3 467.80096435546875 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 64.802 1 68.058 67.558 68.558 3.2556 0 0 0 0.40746 1 15463 15463 0.69038 0 1 + 34524 23230 22027 22038 39590 39590 0.11776896362130174 RAKLLLKKKKK 11 Unmodified _RAKLLLKKKKK_ 0 0 0 AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense;AluSq2_dup37471|chr11:33875296-33875597:+|1.646434431430495|0.0048922799248955|8.39|151.0|6|2|sense AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense AluSq2_dup13927|chr4:49273546-49273752:+|1.1416820198232362|0.0005260052604168|11.08|151.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 452.2691650390625 3 451.99753 1352.97076 NaN NaN NaN NaN NaN NaN NaN 45.014 1 45.014 44.514 45.514 0 0 0 0 0.38417 1 9113 9113 0 0 1 34525 247 22028 22039 39591 39591 0.3083930002069337 RAKNKKKLI 9 Unmodified _RAKNKKKLI_ 0 0 0 REV__L1PA16_dup7649|chr9:85864562-85866830:+|2.3224133599193557|0.2480594062318663|3.23|151.0|18|1|sense REV__L1PA16_dup7649|chr9:85864562-85866830:+|2.3224133599193557|0.2480594062318663|3.23|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 549.8781127929688 2 549.877125 1097.7397 NaN NaN NaN NaN NaN NaN NaN 57.18 1 60.348 59.848 60.848 3.1681 0 0 0 0.4007 1 13194 13194 0.52476 0 1 + 34526 29411 22029 22040 39592 39592 0.19473672038884615 RAKNWTEL 8 Unmodified _RAKNWTEL_ 0 0 0 REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|38|2|sense REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|38|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 509.2768249511719 2 509.277441 1016.54033 0.082073 4.1798E-05 -0.87447 -0.00044535 -0.7924 -0.00040355 509.27683984349164 65.014 0.173 68.27 68.211 68.384 3.2556 16 14 2 0 0 0 0.82752 1 15523 15523 14.838 1.7958 1 229710 + 34527 30742 22030 22041 39593 39593 0.032719920203248876 RAKNWTEL 8 Unmodified _RAKNWTEL_ 0 0 0 REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|38|2|sense REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|38|2|sense MSMS UPN47_class_I_Rep_3 4 509.2770690917969 2 509.277441 1016.54033 NaN NaN NaN NaN NaN NaN NaN 65.254 1 68.434 67.934 68.934 3.1795 0 0 0 0.40292 1 15661 15661 6.7232 0 1 + 34528 30742 22030 22041 39594 39594 0.032719920203248876 RAKPKFKR 8 Unmodified _RAKPKFKR_ 0 0 0 REV__L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|13|1|sense REV__L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 515.8347778320312 2 515.83526 1029.65597 NaN NaN NaN NaN NaN NaN NaN 38.647 1 42.377 41.877 42.877 3.7297 0 0 0 0.40625 1 6761 6761 2.3027 1.6124 1 + 34529 29554 22031 22042 39595 39595 0.14232560661844218 RAKQVVLH 8 Unmodified _RAKQVVLH_ 0 0 0 REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|63|3|sense REV__L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|63|3|sense MSMS UPN46_class_I_Rep_3 1 475.79986572265625 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 119.74 1 119.74 119.24 120.24 0 0 0 0 0.40738 1 29773 29773 0.79363 0 1 + 34530 26717 22032 22043 39596 39596 0.10532592499521343 RAKRTRKTT 9 Unmodified _RAKRTRKTT_ 0 0 0 REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|62|2|sense REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|62|2|sense MSMS UPN48_class_I_Rep_1 5 559.3499755859375 2 559.349263 1116.68397 NaN NaN NaN NaN NaN NaN NaN 105.99 1 109.61 109.11 110.11 3.6277 0 0 0 0.4007 1 25541 25541 0.52476 0 1 + 34531 29646 22033 22044 39597 39597 0.13029838851252862 RAKWKPLEL 9 Unmodified _RAKWKPLEL_ 0 0 0 ERVL-E-int_dup1639|chr3:47954217-47955435:+|1.1010899232093654|0.010006662425357|6.78|149.0|36|3|sense ERVL-E-int_dup1639|chr3:47954217-47955435:+|1.1010899232093654|0.010006662425357|6.78|149.0|36|3|sense ERVL-E-int_dup1639|chr3:47954217-47955435:+|1.1010899232093654|0.010006662425357|6.78|149.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 570.8485107421875 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 27.169 1 27.169 26.669 27.669 0 0 0 0 0.4007 1 3995 3995 0.52476 0 1 34532 7743 22034 22045 39598 39598 0.11725990393597385 RALDHYLTL 9 Unmodified _RALDHYLTL_ 0 0 0 nc|ENSG00000163156|Q9BWG6-2|SCNM1;ENSG00000163156|ENST00000368905|SCNM1;ENST00000497147.1_1_1:151139275-151141558:+|nuORF;ENST00000459799.1_1_1:151140554-151141558:+|nuORF nc|ENSG00000163156|Q9BWG6-2|SCNM1 nc|ENSG00000163156|Q9BWG6-2|SCNM1 MULTI-MSMS UPN48_class_I_Rep_1 5 551.3067016601562 2 551.306198 1100.59784 0.48807 0.00026907 -0.096818 -5.3376E-05 0.39125 0.0002157 551.3060637495379 49.985 0.80235 53.509 53.088 53.891 3.5246 85 49 2 0 0 0 0.21414 3 10094 10050;10094;10147 19.362 3.2128 1 192090 34533 3986 22035 22046 39599;39600;39601 39600 0.051568342258860866 RALDHYLTL 9 Unmodified _RALDHYLTL_ 0 0 0 nc|ENSG00000163156|Q9BWG6-2|SCNM1;ENSG00000163156|ENST00000368905|SCNM1;ENST00000497147.1_1_1:151139275-151141558:+|nuORF;ENST00000459799.1_1_1:151140554-151141558:+|nuORF nc|ENSG00000163156|Q9BWG6-2|SCNM1 nc|ENSG00000163156|Q9BWG6-2|SCNM1 MULTI-MSMS UPN48_class_I_Rep_3 7 551.3068237304688 2 551.306198 1100.59784 0.29893 0.0001648 0.40862 0.00022527 0.70755 0.00039008 551.3063390330984 49.942 0.76979 53.563 53.15 53.92 3.621 78 50 2 0 0 0 0.26468 2 10033 9984;10033 16.149 2.2431 1 194080 34534 3986 22035 22046 39602;39603 39603 0.051568342258860866 RALDHYLTL 9 Unmodified _RALDHYLTL_ 0 0 0 nc|ENSG00000163156|Q9BWG6-2|SCNM1;ENSG00000163156|ENST00000368905|SCNM1;ENST00000497147.1_1_1:151139275-151141558:+|nuORF;ENST00000459799.1_1_1:151140554-151141558:+|nuORF nc|ENSG00000163156|Q9BWG6-2|SCNM1 nc|ENSG00000163156|Q9BWG6-2|SCNM1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 551.306198 1100.59784 0.44277 0.0002441 -0.13431 -7.4046E-05 0.30846 0.00017005 551.3060428062482 49.781 0.68244 53.476 53.124 53.807 3.6946 -0.040389 -0.00019795 NaN 19.362 77 44 2 NaN NaN NaN NaN 0 NaN NaN 0 179220 34535 3986 22035 22046 0.051568342258860866 RALDYALQI 9 Unmodified _RALDYALQI_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 531.8009033203125 2 531.800749 1061.58694 0.45727 0.00024318 -0.61258 -0.00032577 -0.15531 -8.2594E-05 531.8005995172512 58.83 0.91561 62.317 61.863 62.778 3.487 156 58 4 0 0 0 0.05757 2 12883 12823;12883 45.74 16.658 1 964770 34536 1105 22036 22047 39604;39605 39605 0.058614318515992636 RALDYALQI 9 Unmodified _RALDYALQI_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS UPN48_class_I_Rep_2 6 531.8008422851562 2 531.800749 1061.58694 0.51772 0.00027532 -0.56611 -0.00030106 -0.048387 -2.5732E-05 531.8006017759162 58.788 0.97144 62.287 61.83 62.801 3.4987 154 59 4 0 0 0 0.016816 3 12828 12785;12828;12869 65.474 28.495 1 1732200 34537 1105 22036 22047 39606;39607;39608 39607 0.058614318515992636 RALDYALQI 9 Unmodified _RALDYALQI_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS UPN48_class_I_Rep_3 7 531.8009033203125 2 531.800749 1061.58694 0.46073 0.00024502 -0.48906 -0.00026008 -0.028335 -1.5069E-05 531.8006584486188 58.568 0.98416 62.091 61.688 62.672 3.5231 168 66 4 0 0 0 0.05757 3 12739 12677;12739;12788 45.74 14.472 1 1272000 34538 1105 22036 22047 39609;39610;39611 39610 0.058614318515992636 RALFLQMKL 9 Unmodified _RALFLQMKL_ 0 0 0 REV__ENST00000493337.5_1_3:39150687-39159704:+|nuORF REV__ENST00000493337.5_1_3:39150687-39159704:+|nuORF MSMS UPN48_class_I_Rep_3 7 560.004638671875 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 106.2 1 109.89 109.39 110.39 3.6899 0 0 0 0.39518 1 25051 25051 1.8442 0 1 + 34539 20255 22037 22048 39612 39612 0.1088353214727249 RALGVPFVPRT 11 Unmodified _RALGVPFVPRT_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MSMS UPN48_class_I_Rep_3 7 606.8630981445312 2 606.864215 1211.71388 NaN NaN NaN NaN NaN NaN NaN 109.71 1 113.38 112.88 113.88 3.67 0 0 0 0.38417 1 26062 26062 2.7352 0.23671 1 34540 912 22038 22049 39613 39613 0.11648777796585819 RALKRIKL 8 Unmodified _RALKRIKL_ 0 0 0 REV__AluSz_dup59878|chr10:94604125-94604419:-|1.093121775229763|0.047391596091643|4.53|151.0|14|3|sense REV__AluSz_dup59878|chr10:94604125-94604419:-|1.093121775229763|0.047391596091643|4.53|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 499.3520202636719 2 499.353286 996.692019 NaN NaN NaN NaN NaN NaN NaN 113.06 1 116.69 116.19 117.19 3.6314 0 0 0 0.40746 1 27456 27456 0.69038 0 1 + 34541 17117 22039 22050 39614 39614 0.19354017838691107 RALKTPVQL 9 Unmodified _RALKTPVQL_ 0 0 0 REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|44|1|anti-sense REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.3272705078125 2 513.326934 1024.63931 0.39062 0.00020051 -0.13585 -6.9737E-05 0.25476 0.00013078 513.3267935888516 59.812 0.59939 63.292 62.999 63.598 3.4801 81 47 2 0 0 0 0.13244 1 13186 13186 27.629 0 1 303500 + 34542 30795 22040 22051 39615 39615 0.12798014985219197 RALKTPVQL 9 Unmodified _RALKTPVQL_ 0 0 0 REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|44|1|anti-sense REV__LTR12C_dup1335|chr7:100381554-100382995:+|1.900932319410101|0.3078005961977659|2.63|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_2 6 513.3275756835938 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.475 1 62.962 62.462 63.462 3.4868 0 0 0 0.085573 1 13050 13050 27.629 0 1 + 34543 30795 22040 22051 39616 39616 0.12798014985219197 RALLASVGR 9 Unmodified _RALLASVGR_ 0 0 0 ENST00000362003.9_1_4:760752-760959:+|nuORF ENST00000362003.9_1_4:760752-760959:+|nuORF ENST00000362003.9_1_4:760752-760959:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 97.457 1 101.24 100.74 101.74 3.7861 0 0 0 0.39428 1 24150 24150 2.0598 1.2661 1 34544 6335 22041 22052 39617 39617 0.10392288636910507 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN46_class_I_Rep_3 1 441.2975158691406 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 24.724 1 24.724 24.224 25.224 0 0 0 0 0.53105 1 3288 3288 0.69767 0.24315 1 34545 16642 22042 22053 39618 39618 0.22148866441534665 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN46_class_I_Rep_3 1 441.2970886230469 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 26.838 1 26.838 26.338 27.338 0 0 0 0 0.53105 1 3899 3899 0.69767 0.24315 1 34546 16642 22042 22053 39619 39619 0.22148866441534665 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN46_class_I_Rep_3 1 441.2970886230469 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 28.748 1 28.748 28.248 29.248 0 0 0 0 0.53105 1 4458 4458 0.69767 0.24315 1 34547 16642 22042 22053 39620 39620 0.22148866441534665 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN46_class_I_Rep_3 1 441.29736328125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 30.486 1 30.486 29.986 30.986 0 0 0 0 0.53105 1 4972 4972 0.69767 0.24315 1 34548 16642 22042 22053 39621 39621 0.22148866441534665 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN46_class_I_Rep_3 1 441.2969665527344 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 34.456 1 34.456 33.956 34.956 0 0 0 0 0.53105 1 6154 6154 0.69767 0.24315 1 34549 16642 22042 22053 39622 39622 0.22148866441534665 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN47_class_I_Rep_2 3 441.2976989746094 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 53.323 1 56.649 56.149 57.149 3.3266 0 0 0 0.53105 1 11965 11965 0.13989 0.04505 1 34550 16642 22042 22053 39623 39623 0.22148866441534665 RALLKRRRPR 10 Unmodified _RALLKRRRPR_ 0 0 0 nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN48_class_I_Rep_2 6 441.2974548339844 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 110.68 1 114.35 113.85 114.85 3.669 0 0 0 0.53105 1 26330 26330 0.69767 0.24315 1 34551 16642 22042 22053 39624 39624 0.22148866441534665 RALLLNTKP 9 Unmodified _RALLLNTKP_ 0 0 0 REV__LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|4|1|sense REV__LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 513.7949829101562 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.187 1 62.71 62.21 63.21 3.5231 0 0 0 0.3967 1 12896 12896 1.4819 0 1 + 34552 31018 22043 22054 39625 39625 0.12798014985219197 RALMFWVV 8 Unmodified _RALMFWVV_ 0 0 0 ENST00000464769.1_1_3:52874512-52877125:-|nuORF ENST00000464769.1_1_3:52874512-52877125:-|nuORF ENST00000464769.1_1_3:52874512-52877125:-|nuORF MSMS UPN48_class_I_Rep_3 7 511.25128173828125 2 511.286223 1020.55789 NaN NaN NaN NaN NaN NaN NaN 41.259 1 44.904 44.404 45.404 3.6458 0 0 0 0.40738 1 7433 7433 0.79363 0 1 34553 6884 22044 22055 39626 39626 0.048436160216397184 RALMSFGW 8 Unmodified _RALMSFGW_ 0 0 0 REV__AluSx_dup25954|chr4:39835518-39835822:-|1.5642716504521887|0.0928370882305089|4.07|151.0|14|2|anti-sense REV__AluSx_dup25954|chr4:39835518-39835822:-|1.5642716504521887|0.0928370882305089|4.07|151.0|14|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.2451171875 2 484.244555 966.474557 NaN NaN NaN NaN NaN NaN NaN 97.533 1 97.533 97.033 98.033 0 0 0 0 0.40746 1 23735 23735 0.69038 0 1 + 34554 17115 22045 22056 39627 39627 -0.010021204262102401 RALQVLALL 9 Unmodified _RALQVLALL_ 0 0 0 ENST00000595666.1_1_19:44301745-44302778:-|nuORF;nc|ENSG00000159871|Q6UWN5-2|LYPD5;ENSG00000159871|ENST00000377950|LYPD5 ENST00000595666.1_1_19:44301745-44302778:-|nuORF ENST00000595666.1_1_19:44301745-44302778:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 498.8319396972656 2 498.831852 995.649151 -0.16827 -8.3937E-05 0.20366 0.00010159 0.035393 1.7655E-05 498.8318651982307 40.453 0.96758 43.824 43.314 44.281 3.3712 147 66 3 0 0 0 0.46869 1 8191 8191 3.9444 0 1 299970 34555 3847 22046 22057 39628 39628 0.15115202990614307 RALRFFIV 8 Unmodified _RALRFFIV_ 0 0 0 REV__L1ME4b_dup3655|chr3:33859454-33860137:+|1.0540817118287|0.3991861414297973|1.4|151.0|22|3|sense REV__L1ME4b_dup3655|chr3:33859454-33860137:+|1.0540817118287|0.3991861414297973|1.4|151.0|22|3|sense MSMS UPN48_class_I_Rep_1 5 511.3193054199219 2 511.318912 1020.62327 NaN NaN NaN NaN NaN NaN NaN 82.269 1 85.844 85.344 86.344 3.5753 0 0 0 0.40738 1 19643 19643 0.79363 0 1 + 34556 28295 22047 22058 39629 39629 0.11378353538998454 RALRLPPCRR 10 Unmodified _RALRLPPCRR_ 0 0 0 REV__ENST00000350796.7_1_7:6202360-6202609:-|nuORF REV__ENST00000350796.7_1_7:6202360-6202609:-|nuORF MSMS UPN47_class_I_Rep_3 4 619.3739013671875 2 619.374758 1236.73496 NaN NaN NaN NaN NaN NaN NaN 82.889 1 86.226 85.726 86.726 3.337 0 0 0 0.53105 1 20780 20780 1.4819 0.15237 1 + 34557 21853 22048 22059 39630 39630 0.12606464624468572 RALRWSHT 8 Unmodified _RALRWSHT_ 0 0 0 REV__ENST00000301454.8_1_19:6440495-6440663:-|nuORF REV__ENST00000301454.8_1_19:6440495-6440663:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.7821655273438 2 513.783225 1025.5519 NaN NaN NaN NaN NaN NaN NaN 18.338 1 18.338 17.838 18.838 0 0 0 0 0.40643 1 1587 1587 2.0598 0 1 + 34558 21672 22049 22060 39631 39631 0.04014233834323022 RALRYYYQR 9 Unmodified _RALRYYYQR_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1;ENST00000404600.2_1_6:1514778-1515111:-|nuORF ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000120690|P32519-2|ELF1;ENST00000404600.2_1_6:1514778-1515111:-|nuORF ENSG00000102034|ENST00000308167|ELF4 MULTI-SECPEP UPN46_class_I_Rep_3 1 430.25604248046875 3 430.235156 1287.68364 -0.080113 -3.4468E-05 -0.17563 -7.5563E-05 -0.25574 -0.00011003 430.2351550961243 32.25 0.67937 32.25 31.889 32.569 0 69 51 2 0 0 0 0.12408 1 5402 5402 2.9952 0 1 105170 34559 1600;2334;1894;6607 22050 22061 39632 39632 0.05130419131387498 RALVRRRRS 9 Unmodified _RALVRRRRS_ 0 0 0 REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF MSMS UPN48_class_I_Rep_1 5 585.31201171875 2 585.376146 1168.73774 NaN NaN NaN NaN NaN NaN NaN 56.054 1 59.556 59.056 60.056 3.5014 0 0 0 0.40038 1 12024 12024 0.6015 0 1 + 34560 21950 22051 22062 39633 39633 0.16012056073645908 RAMKMLRF 8 Unmodified _RAMKMLRF_ 0 0 0 REV__ENSG00000100726|ENST00000262319|TELO2 REV__ENSG00000100726|ENST00000262319|TELO2 MSMS UPN47_class_I_Rep_3 4 526.797607421875 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 17.409 1 20.767 20.267 21.267 3.3581 0 0 0 0.40746 1 1268 1268 0.69038 0 1 + 34561 18131 22052 22063 39634 39634 0.054584634098091556 RAMRSTTLLAL 11 Unmodified _RAMRSTTLLAL_ 0 0 0 nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000182450|Q9NYG8-2|KCNK4 nc|ENSG00000182450|Q9NYG8-2|KCNK4 MSMS UPN48_class_I_Rep_1 5 411.57867431640625 3 411.576302 1231.70708 NaN NaN NaN NaN NaN NaN NaN 91.323 1 94.949 94.449 95.449 3.626 0 0 0 0.3095 1 21942 21942 11.631 0 1 34562 16768 22053 22064 39635 39635 0.10049096853754236 RANKEKDY 8 Unmodified _RANKEKDY_ 0 0 0 REV__ENSG00000277058|ENST00000617807|HNRNPCL3 REV__ENSG00000277058|ENST00000617807|HNRNPCL3 MULTI-MSMS UPN46_class_I_Rep_3 1 512.2656860351562 2 512.26453 1022.51451 -0.28393 -0.00014544 0.13855 7.0975E-05 -0.14537 -7.447E-05 512.2645891381538 14.401 0.34921 14.401 14.283 14.633 0 72 41 2 0 0 0 0.82752 2 617 617;631 4.3292 0 1 67671 + 34563 20671 22054 22065 39636;39637 39636 0.004150977780341236 RANRRKPK 8 Unmodified _RANRRKPK_ 0 0 0 nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 MSMS UPN48_class_I_Rep_1 5 513.3275146484375 2 513.325591 1024.63663 NaN NaN NaN NaN NaN NaN NaN 60.208 1 63.681 63.181 64.181 3.4737 0 0 0 0.40746 1 13297 13297 0.69038 0 1 34564 3601 22055 22066 39638 39638 0.12529604370934067 RAPAIEWLP 9 Unmodified _RAPAIEWLP_ 0 0 0 ENST00000377044.8_2_9:74383305-74383440:-|nuORF ENST00000377044.8_2_9:74383305-74383440:-|nuORF ENST00000377044.8_2_9:74383305-74383440:-|nuORF MSMS UPN47_class_I_Rep_3 4 526.7970581054688 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 22.531 1 25.882 25.382 26.382 3.3503 0 0 0 0.39428 1 2712 2712 2.0598 0 1 34565 6454 22056 22067 39639 39639 0.05773753059793307 RAPFAIEV 8 Unmodified _RAPFAIEV_ 0 0 0 REV__ENST00000454935.1_1_10:102133418-102133601:+|nuORF REV__ENST00000454935.1_1_10:102133418-102133601:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 451.7575988769531 2 451.758352 901.502152 -0.7639 -0.0003451 -0.44171 -0.00019955 -1.2056 -0.00054464 451.758257406483 35.757 0.51682 39.012 38.825 39.342 3.2547 41 33 2 0 0 0 0.82752 1 6754 6754 0.69038 0 1 61580 + 34566 22402 22057 22068 39640 39640 0.0474610610565378 RAPKPYLP 8 Unmodified _RAPKPYLP_ 0 0 0 REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.28106689453125 2 471.281995 940.549437 NaN NaN NaN NaN NaN NaN NaN 32.113 1 35.826 35.326 36.326 3.7131 0 0 0 0.40604 1 5483 5483 2.5775 0 1 + 34567 23215 22058 22069 39641 39641 0.07678385376641472 RAPLRETA 8 Unmodified _RAPLRETA_ 0 0 0 ENST00000382247.5_1_4:17812145-17812304:-|nuORF ENST00000382247.5_1_4:17812145-17812304:-|nuORF ENST00000382247.5_1_4:17812145-17812304:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 457.2641906738281 2 457.264333 912.514114 0.18037 8.2478E-05 -0.15378 -7.0317E-05 0.026595 1.2161E-05 457.2639822584272 77.575 0.088707 77.575 77.532 77.621 0 12 8 2 0 0 0 0.82752 1 18131 18131 0.69038 0 1 94029 34568 6498 22059 22070 39642 39642 0.05435722848835667 RAPLRILL 8 Unmodified _RAPLRILL_ 0 0 0 REV__MER1B_dup702|chr2:171750935-171751311:-|1.0108824799810712|0.0728364188646629|3.79|150.0|23|3|anti-sense REV__MER1B_dup702|chr2:171750935-171751311:-|1.0108824799810712|0.0728364188646629|3.79|150.0|23|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3268127441406 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 30.047 1 30.047 29.547 30.547 0 0 0 0 0.40738 1 4839 4839 0.79363 0 1 + 34569 31139 22060 22071 39643 39643 0.16162640056029431 RAPPGRVG 8 Unmodified _RAPPGRVG_ 0 0 0 nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1 nc|ENSG00000187624|Q6ZQX7-2|LIAT1 nc|ENSG00000187624|Q6ZQX7-2|LIAT1 MULTI-MSMS UPN48_class_I_Rep_2 6 405.2412109375 2 405.240661 808.46677 0.076509 3.1004E-05 -0.20412 -8.272E-05 -0.12762 -5.1715E-05 405.2404867574691 76.891 0.2647 80.503 80.475 80.74 3.6116 36 26 3 0 0 0 0.82752 1 18175 18175 2.3027 0 1 79456 34570 5198 22061 22072 39644 39644 0.05487488368510185 RAPPGRVG 8 Unmodified _RAPPGRVG_ 0 0 0 nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1 nc|ENSG00000187624|Q6ZQX7-2|LIAT1 nc|ENSG00000187624|Q6ZQX7-2|LIAT1 MULTI-MSMS UPN48_class_I_Rep_3 7 405.2406005859375 2 405.240661 808.46677 0.14116 5.7205E-05 -0.00027226 -1.1033E-07 0.14089 5.7095E-05 405.2406115865811 76.416 1.2118 79.999 79.411 80.622 3.5831 285 132 3 0 0 0 0.82752 1 18067 18067 2.3027 0 1 957790 34571 5198 22061 22072 39645 39645 0.05487488368510185 RAPPPRRRPE 10 Unmodified _RAPPPRRRPE_ 0 0 0 ENST00000234310.7_1_2:68479316-68479514:-|nuORF ENST00000234310.7_1_2:68479316-68479514:-|nuORF ENST00000234310.7_1_2:68479316-68479514:-|nuORF MSMS UPN46_class_I_Rep_3 1 411.24365234375 3 411.242533 1230.70577 NaN NaN NaN NaN NaN NaN NaN 95.445 1 95.445 94.945 95.945 0 0 0 0 0.53105 1 23173 23173 5.4027 2.6675 1 34572 5890 22062 22073 39646 39646 0.09964643599846568 RAPRWLPA 8 Unmodified _RAPRWLPA_ 0 0 0 ENST00000497293.1_1_3:111697881-111700815:+|nuORF;nc|ENSG00000144827|Q9NUJ1-3|ABHD10;ENSG00000144827|ENST00000273359|ABHD10 ENST00000497293.1_1_3:111697881-111700815:+|nuORF ENST00000497293.1_1_3:111697881-111700815:+|nuORF MSMS UPN48_class_I_Rep_1 5 483.7865295410156 2 483.785236 965.555919 NaN NaN NaN NaN NaN NaN NaN 114.98 1 118.61 118.11 119.11 3.6301 0 0 0 0.40746 1 27961 27961 0.69038 0 1 34573 3375 22063 22074 39647 39647 0.07176323328030776 RAQHAKKQ 8 Unmodified _RAQHAKKQ_ 0 0 0 REV__ENSG00000047315|ENST00000314595|POLR2B REV__ENSG00000047315|ENST00000314595|POLR2B MSMS UPN48_class_I_Rep_2 6 483.7853698730469 2 483.783225 965.551896 NaN NaN NaN NaN NaN NaN NaN 21.105 1 24.753 24.253 25.253 3.648 0 0 0 0.40746 1 1936 1936 0.69038 0 1 + 34574 17663 22064 22075 39648 39648 0.06774233834312327 RAQKEVPK 8 Unmodified _RAQKEVPK_ 0 0 0 REV__L1ME3B_dup8048|chr21:44068926-44069896:+|1.3594568283768615|0.0578208814903398|4.56|151.0|23|3|sense REV__L1ME3B_dup8048|chr21:44068926-44069896:+|1.3594568283768615|0.0578208814903398|4.56|151.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 478.2872314453125 2 478.287808 954.561064 NaN NaN NaN NaN NaN NaN NaN 40.029 1 43.696 43.196 44.196 3.6668 0 0 0 0.40643 1 7893 7893 2.0598 0 1 + 34575 28087 22065 22076 39649 39649 0.08196582399989438 RAQPARAH 8 Unmodified _RAQPARAH_ 0 0 0 REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 453.7844543457031 2 453.754467 905.494381 -0.44036 -0.00019982 -0.58518 -0.00026553 -1.0255 -0.00046534 453.75404731273983 12.571 0.32782 16.021 15.96 16.288 3.45 66 39 2 0 0 0 0.72333 1 158 158 5.7604 0 1 66968 + 34576 21742 22066 22077 39650 39650 0.03785391628741763 RAQPARAH 8 Unmodified _RAQPARAH_ 0 0 0 REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 453.754467 905.494381 -0.51419 -0.00023332 -0.80262 -0.00036419 -1.3168 -0.00059751 453.754017588062 12.666 0.26925 16.055 15.958 16.227 3.3883 0.016797 -8.0555E-05 NaN 5.7604 65 32 3 NaN NaN NaN NaN 0 NaN NaN 0 82562 + 34577 21742 22066 22077 0.03785391628741763 RAQPHSFLPAA 11 Unmodified _RAQPHSFLPAA_ 0 0 0 ENST00000496281.1_1_20:62323608-62327208:+|nuORF ENST00000496281.1_1_20:62323608-62327208:+|nuORF ENST00000496281.1_1_20:62323608-62327208:+|nuORF MSMS UPN47_class_I_Rep_3 4 597.8203125 2 597.822547 1193.63054 NaN NaN NaN NaN NaN NaN NaN 63.945 1 67.12 66.62 67.62 3.1741 0 0 0 0.38417 1 15259 15259 1.3295 0.63916 1 34578 7098 22067 22078 39651 39651 0.04147041348778657 RAQSIESLLI 10 Unmodified _RAQSIESLLI_ 0 0 0 REV__L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|48|3|sense REV__L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|48|3|sense MSMS UPN48_class_I_Rep_2 6 565.2930908203125 2 565.332413 1128.65027 NaN NaN NaN NaN NaN NaN NaN 35.974 1 39.661 39.161 40.161 3.6877 0 0 0 0.53105 1 5998 5998 1.3295 0 1 + 34579 25142 22068 22079 39652 39652 0.09109372568855179 RARALVAF 8 Unmodified _RARALVAF_ 0 0 0 ENSG00000177045|ENST00000317578|SIX5 ENSG00000177045|ENST00000317578|SIX5 ENSG00000177045|ENST00000317578|SIX5 MSMS UPN48_class_I_Rep_1 5 452.2629089355469 2 452.279786 902.54502 NaN NaN NaN NaN NaN NaN NaN 59.698 1 63.178 62.678 63.678 3.4801 0 0 0 0.40738 1 13140 13140 0.79363 0 1 34580 4778 22069 22080 39653 39653 0.08984920953741948 RARARRPARE 10 Unmodified _RARARRPARE_ 0 0 0 ENST00000292363.9_1_19:651790-663233:-|nuORF ENST00000292363.9_1_19:651790-663233:-|nuORF ENST00000292363.9_1_19:651790-663233:-|nuORF MSMS UPN47_class_I_Rep_1 2 619.8692626953125 2 619.868686 1237.72282 NaN NaN NaN NaN NaN NaN NaN 90.06 1 93.75 93.25 94.25 3.6899 0 0 0 0.53105 1 22508 22508 0.40072 0 1 34581 6047 22070 22081 39654 39654 0.11346564205609866 RAREPRGV 8 Unmodified _RAREPRGV_ 0 0 0 ENST00000507667.1_3_4:141445438-141445687:+|nuORF ENST00000507667.1_3_4:141445438-141445687:+|nuORF ENST00000507667.1_3_4:141445438-141445687:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 471.2796630859375 2 470.7754 939.536246 0.24192 0.00011389 1.3825 0.00065086 1.6244 0.00076475 470.7737726321014 86.889 0.26509 86.889 86.754 87.019 0 57 24 3 0 0 0 0.82752 1 20816 20816 2.3027 0 1 400330 34582 7164 22071 22082 39655 39655 0.06405947317284699 RARFPPTTA 9 Unmodified _RARFPPTTA_ 0 0 0 ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENSG00000099917|ENST00000263205|MED15 ENST00000489651.5_1_22:20929276-20940988:+|nuORF ENST00000489651.5_1_22:20929276-20940988:+|nuORF MSMS UPN48_class_I_Rep_1 5 508.78662109375 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 36.982 1 40.489 39.989 40.989 3.507 0 0 0 0.39518 1 6236 6236 1.8442 1.0506 1 34583 1452 22072 22083 39656 39656 0.04915698257218537 RARFRKLA 8 Unmodified _RARFRKLA_ 0 0 0 REV__ENST00000563255.1_1_16:65157767-65158064:-|nuORF REV__ENST00000563255.1_1_16:65157767-65158064:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 509.3257751464844 2 509.32506 1016.63557 0.30681 0.00015627 1.958 0.00099728 2.2649 0.0011535 509.3260925695811 82.01 0.096222 82.01 81.961 82.057 0 10 8 2 0 0 0 0.82752 1 19407 19407 2.3027 0 1 63975 + 34584 23040 22073 22084 39657 39657 0.12791390002018943 RARFWFHV 8 Unmodified _RARFWFHV_ 0 0 0 L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|313|3|anti-sense L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|313|3|anti-sense L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|313|3|anti-sense MSMS UPN48_class_I_Rep_2 6 559.8057861328125 2 559.80396 1117.59337 NaN NaN NaN NaN NaN NaN NaN 32.335 1 35.985 35.485 36.485 3.6497 0 0 0 0.40746 1 4984 4984 0.69038 0.088878 1 34585 14400 22074 22085 39658 39658 0.03927414593636058 RARFWYRRSTT 11 Unmodified _RARFWYRRSTT_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MSMS UPN46_class_I_Rep_3 1 500.6025390625 3 500.604131 1498.79056 NaN NaN NaN NaN NaN NaN NaN 97.225 1 97.225 96.725 97.725 0 0 0 0 0.38417 1 23653 23653 0.50596 0.34663 1 34586 1549 22075 22086 39659 39659 0.06111969345761281 RARGPPVG 8 Unmodified _RARGPPVG_ 0 0 0 ENST00000309957.2_2_13:111289482-111290624:+|nuORF ENST00000309957.2_2_13:111289482-111290624:+|nuORF ENST00000309957.2_2_13:111289482-111290624:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 405.24053955078125 2 405.240661 808.46677 0.046171 1.871E-05 0.27528 0.00011156 0.32146 0.00013027 405.2407001510096 79.658 0.8987 79.658 79.37 80.269 0 151 86 2 0 0 0 0.82752 1 18826 18826 2.3027 2.3027 1 398320 34587 6105 22076 22087 39660 39660 0.05487488368510185 RARGPPVG 8 Unmodified _RARGPPVG_ 0 0 0 ENST00000309957.2_2_13:111289482-111290624:+|nuORF ENST00000309957.2_2_13:111289482-111290624:+|nuORF ENST00000309957.2_2_13:111289482-111290624:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 405.2405700683594 2 405.240661 808.46677 0.14116 5.7205E-05 -0.00027226 -1.1033E-07 0.14089 5.7095E-05 405.2406115865811 76.416 1.2118 79.999 79.411 80.622 3.5831 285 132 3 0 0 0 0.82752 1 18032 18032 2.3027 0 1 957790 34588 6105 22076 22087 39661 39661 0.05487488368510185 RARKRASL 8 Unmodified _RARKRASL_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|8|intron;nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|8|intron;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|2|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|1|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|2|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|9|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|7|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|6|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|2|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|3|intron;ENSG00000051341.14,POLQ,chr3,-,I23.1,121472165,121473349|40|4.36|3|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|5|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|4|intron;ENSG00000051341.14,POLQ,chr3,-,I17.1,121490409,121493477|24|8.45|1|intron;ENSG00000051341.14,POLQ,chr3,-,I30.1,121433034,121436121|44|4.73|5|intron ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MSMS UPN48_class_I_Rep_2 6 478.97540283203125 2 479.306867 956.599181 NaN NaN NaN NaN NaN NaN NaN 61.084 1 64.563 64.063 65.063 3.4785 0 0 0 0.40625 1 13541 13541 2.3027 0 1 34589 919 22077 22088 39662 39662 0.11914513105307378 RARLAFRNL 9 Unmodified _RARLAFRNL_ 0 0 0 ENSG00000158715|ENST00000367145|SLC45A3 ENSG00000158715|ENST00000367145|SLC45A3 ENSG00000158715|ENST00000367145|SLC45A3 MSMS UPN48_class_I_Rep_2 6 558.8414916992188 2 558.841074 1115.66759 NaN NaN NaN NaN NaN NaN NaN 23.913 1 27.552 27.052 28.052 3.6397 0 0 0 0.4007 1 2689 2689 0.52476 0 1 34590 3809 22078 22089 39663 39663 0.11438757685186829 RARLPHHA 8 Unmodified _RARLPHHA_ 0 0 0 REV__ENST00000391773.5_1_19:54327198-54327612:-|nuORF REV__ENST00000391773.5_1_19:54327198-54327612:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2769470214844 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 72.562 1 76.036 75.536 76.536 3.4732 0 0 0 0.40738 1 17038 17038 0.79363 0.10326 1 + 34591 22083 22079 22090 39664 39664 0.06165670899747511 RARLRVKK 8 Unmodified _RARLRVKK_ 0 0 0 AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|9|2|sense AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|9|2|sense AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 513.854736328125 2 513.853984 1025.69342 NaN NaN NaN NaN NaN NaN NaN 111.16 1 114.69 114.19 115.19 3.529 0 0 0 0.40746 1 27278 27278 0.69038 0.69038 1 34592 391 22080 22091 39665 39665 0.18159651927453524 RARPALLRPP 10 Unmodified _RARPALLRPP_ 0 0 0 REV__ENSG00000134504|ENST00000580059|KCTD1 REV__ENSG00000134504|ENST00000580059|KCTD1 MSMS UPN47_class_I_Rep_1 2 573.8639526367188 2 573.864549 1145.71454 NaN NaN NaN NaN NaN NaN NaN 18.824 1 22.405 21.905 22.905 3.5806 0 0 0 0.53105 1 1639 1639 0.40072 0 1 + 34593 19101 22081 22092 39666 39666 0.14751617236311176 RARPGWTCF 9 Unmodified _RARPGWTCF_ 0 0 0 REV__ENST00000398810.6_1_7:50660504-50660642:-|nuORF REV__ENST00000398810.6_1_7:50660504-50660642:-|nuORF MSMS UPN48_class_I_Rep_1 5 547.2706909179688 2 547.271635 1092.52872 NaN NaN NaN NaN NaN NaN NaN 117.17 1 120.8 120.3 121.3 3.6254 0 0 0 0.39428 1 28552 28552 2.0598 0 1 + 34594 22145 22082 22093 39667 39667 -0.01384528274661534 RARRLMPVIPV 11 Unmodified _RARRLMPVIPV_ 0 0 0 AluSg_dup30765|chr17:30778916-30779221:-|1.694601698310728|0.140288439231795|3.59|151.0|1|1|sense AluSg_dup30765|chr17:30778916-30779221:-|1.694601698310728|0.140288439231795|3.59|151.0|1|1|sense AluSg_dup30765|chr17:30778916-30779221:-|1.694601698310728|0.140288439231795|3.59|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 436.9420471191406 3 436.607936 1306.80198 0.11735 5.1236E-05 -0.60911 -0.00026594 -0.49176 -0.00021471 436.6078856735564 59.897 0.47898 63.414 63.028 63.507 3.5169 76 38 3 0 0 0 0.67113 1 13137 13137 1.3296 0 1 174540 34595 217 22083 22094 39668 39668 0.16085075115552172 RARWHWRH 8 Unmodified _RARWHWRH_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS UPN46_class_I_Rep_3 1 602.8219604492188 2 602.821007 1203.62746 NaN NaN NaN NaN NaN NaN NaN 57.84 1 57.84 57.34 58.34 0 0 0 0 0.40746 1 12698 12698 0.69038 0.16561 1 34596 7692 22084 22095 39669 39669 0.03379255805248249 RASKSAKR 8 Unmodified _RASKSAKR_ 0 0 0 L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|75|3|sense L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|75|3|sense L1PB1_dup6696|chr8:99044900-99047677:-|1.629790120785809|0.013401671741331|6.93|151.0|75|3|sense MSMS UPN46_class_I_Rep_3 1 452.2776184082031 2 452.277775 902.540997 NaN NaN NaN NaN NaN NaN NaN 86.696 1 86.696 86.196 87.196 0 0 0 0 0.40659 1 20733 20733 1.8442 0 1 34597 15184 22085 22096 39670 39670 0.08582831460034868 RASPPWDPG 9 Unmodified _RASPPWDPG_ 0 0 0 ENST00000416469.6_1_8:42397081-42401634:+|nuORF;ENST00000417410.6_1_8:42397081-42397414:+|nuORF ENST00000416469.6_1_8:42397081-42401634:+|nuORF ENST00000416469.6_1_8:42397081-42401634:+|nuORF MSMS UPN47_class_I_Rep_1 2 491.74053955078125 2 491.740691 981.466829 NaN NaN NaN NaN NaN NaN NaN 22.114 1 25.788 25.288 26.288 3.6749 0 0 0 0.39518 1 2514 2514 1.8442 0 1 34598 6651 22086 22097 39671 39671 -0.024645564221486893 RATRRHGLS 9 Unmodified _RATRRHGLS_ 0 0 0 ENST00000261038.5_1_3:122514002-122525788:+|nuORF;ENST00000477647.1_1_3:122514002-122598222:+|nuORF ENST00000261038.5_1_3:122514002-122525788:+|nuORF ENST00000261038.5_1_3:122514002-122525788:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 527.3054809570312 2 527.304855 1052.59516 0.33323 0.00017571 0.47659 0.00025131 0.80982 0.00042702 527.3050196078248 93.948 0.24003 93.948 93.84 94.08 0 29 24 2 0 0 0 0.47493 1 22771 22771 3.2813 1.2216 1 1006800 34599 5953 22087 22098 39672 39672 0.07096423611619684 RATRRHGLS 9 Unmodified _RATRRHGLS_ 0 0 0 ENST00000261038.5_1_3:122514002-122525788:+|nuORF;ENST00000477647.1_1_3:122514002-122598222:+|nuORF ENST00000261038.5_1_3:122514002-122525788:+|nuORF ENST00000261038.5_1_3:122514002-122525788:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 527.304855 1052.59516 0.33323 0.00017571 0.47659 0.00025131 0.80982 0.00042702 527.3050196078248 93.948 0.24003 93.948 93.84 94.08 0 0 0 NaN 3.2813 29 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1006800 34600 5953 22087 22098 0.07096423611619684 RATRRRGN 8 Unmodified _RATRRRGN_ 0 0 0 ENST00000465199.5_1_1:228289779-228291093:-|nuORF ENST00000465199.5_1_1:228289779-228291093:-|nuORF ENST00000465199.5_1_1:228289779-228291093:-|nuORF MSMS UPN48_class_I_Rep_1 5 493.7896423339844 2 493.789373 985.564192 NaN NaN NaN NaN NaN NaN NaN 112.79 1 116.43 115.93 116.93 3.6321 0 0 0 0.40746 1 27383 27383 0.69038 0 1 34601 6889 22088 22099 39673 39673 0.07083270297380295 RAVEYNALF 9 Unmodified _RAVEYNALF_ 0 0 0 ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1 ENST00000565642.5_1_16:71777395-71799448:-|nuORF ENST00000565642.5_1_16:71777395-71799448:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 541.7850341796875 2 541.785099 1081.55564 0.42014 0.00022763 0.0047679 2.5832E-06 0.42491 0.00023021 541.7849555084539 53.384 0.83575 56.904 56.527 57.362 3.5192 134 60 3 0 0 0 0.24936 1 11213 11213 17.113 0.1706 1 470360 34602 4261 22089 22100 39674 39674 0.018128588175159166 RAVEYNALF 9 Unmodified _RAVEYNALF_ 0 0 0 ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1 ENST00000565642.5_1_16:71777395-71799448:-|nuORF ENST00000565642.5_1_16:71777395-71799448:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 541.7853393554688 2 541.785099 1081.55564 0.54488 0.00029521 0.0089989 4.8755E-06 0.55387 0.00030008 541.7849394651498 53.219 0.78662 56.829 56.511 57.297 3.6098 113 50 3 0 0 0 0.24936 2 11168 11127;11168 17.113 2.9685 1 353500 34603 4261 22089 22100 39675;39676 39676 0.018128588175159166 RAVIKKIW 8 Unmodified _RAVIKKIW_ 0 0 0 nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-4|CACNA1D MSMS UPN47_class_I_Rep_2 3 507.3337707519531 2 507.334562 1012.65457 NaN NaN NaN NaN NaN NaN NaN 76.937 1 80.268 79.768 80.768 3.3315 0 0 0 0.40746 1 19061 19061 0.69038 0 1 34604 3760 22090 22101 39677 39677 0.1487492657306575 RAVKCFKN 8 Unmodified _RAVKCFKN_ 0 0 0 REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|30|2|sense REV__L1M1_dup8931|chr18:57718046-57719248:+|3.778382653859059|0.3442772517360515|3.46|151.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 483.2698669433594 2 483.271104 964.527655 NaN NaN NaN NaN NaN NaN NaN 31.299 1 31.299 30.799 31.799 0 0 0 0 0.40625 1 5212 5212 2.3027 1.5091 1 + 34605 24163 22091 22102 39678 39678 0.04397257356436057 RAVKILKKK 9 Unmodified _RAVKILKKK_ 0 0 0 ENST00000586358.5_1_19:1207098-1220516:+|nuORF;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11 ENST00000586358.5_1_19:1207098-1220516:+|nuORF ENST00000586358.5_1_19:1207098-1220516:+|nuORF MSMS UPN47_class_I_Rep_3 4 542.3901977539062 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.862 1 73.066 72.566 73.566 3.2044 0 0 0 0.4007 1 17058 17058 0.52476 0.52476 1 34606 2239 22092 22103 39679 39679 0.22711146561300666 RAVKILKKK 9 Unmodified _RAVKILKKK_ 0 0 0 ENST00000586358.5_1_19:1207098-1220516:+|nuORF;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11 ENST00000586358.5_1_19:1207098-1220516:+|nuORF ENST00000586358.5_1_19:1207098-1220516:+|nuORF MSMS UPN47_class_I_Rep_3 4 542.39013671875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 74.021 1 77.257 76.757 77.757 3.2363 0 0 0 0.4007 1 18306 18306 0.52476 0.52476 1 34607 2239 22092 22103 39680 39680 0.22711146561300666 RAVLEEEH 8 Unmodified _RAVLEEEH_ 0 0 0 REV__ENSG00000133636|ENST00000256010|NTS REV__ENSG00000133636|ENST00000256010|NTS MSMS UPN47_class_I_Rep_2 3 491.7509460449219 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 27.346 1 30.844 30.344 31.344 3.4986 0 0 0 0.40625 1 4091 4091 2.3027 0 1 + 34608 19061 22093 22104 39681 39681 -0.0035259111328969084 RAVLEEEH 8 Unmodified _RAVLEEEH_ 0 0 0 REV__ENSG00000133636|ENST00000256010|NTS REV__ENSG00000133636|ENST00000256010|NTS MSMS UPN47_class_I_Rep_2 3 491.75152587890625 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 27.486 1 30.985 30.485 31.485 3.4986 0 0 0 0.40625 1 4133 4133 2.3027 0 1 + 34609 19061 22093 22104 39682 39682 -0.0035259111328969084 RAVVHAFLL 9 Unmodified _RAVVHAFLL_ 0 0 0 REV__HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|18|1|sense REV__HERVK11-int_dup25|chr2:63989866-63992327:+|1.9599442506471407|0.0560473314633211|5.13|151.0|18|1|sense MSMS UPN48_class_I_Rep_1 5 513.3169555664062 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 57.542 1 61.036 60.536 61.536 3.4942 0 0 0 0.39428 1 12477 12477 2.0598 0 1 + 34610 23798 22094 22105 39683 39683 0.10686049676360199 RAWFRRALYI 10 Unmodified _RAWFRRALYI_ 0 0 0 REV__ENST00000518477.5_1_5:78317432-78365396:-|nuORF REV__ENST00000518477.5_1_5:78317432-78365396:-|nuORF MSMS UPN48_class_I_Rep_1 5 451.2626037597656 3 451.263046 1350.76731 NaN NaN NaN NaN NaN NaN NaN 113.77 1 117.4 116.9 117.9 3.6314 0 0 0 0.53105 1 27643 27643 0.15932 0 1 + 34611 22768 22095 22106 39684 39684 0.10595575299134907 RAWLNKRQ 8 Unmodified _RAWLNKRQ_ 0 0 0 L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 536.1655883789062 2 536.312149 1070.60975 0.34899 0.00018717 -0.959 -0.00051433 -0.61002 -0.00032716 536.8134783038801 92.594 0.060417 92.594 92.564 92.624 0 8 6 2 0 0 0 0.72333 1 22416 22416 2.3027 0 1 64369 34612 14635 22096 22107 39685 39685 0.0772649575972082 RAWLNKRQ 8 Unmodified _RAWLNKRQ_ 0 0 0 L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 536.312149 1070.60975 0.46822 0.00025111 -1.5024 -0.00080577 -1.0342 -0.00055466 536.3111599765429 89.151 0.14717 92.825 92.709 92.856 3.6738 0.10791 -0.00013594 NaN 2.3027 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 118520 34613 14635 22096 22107 0.0772649575972082 RAWLNKRQ 8 Unmodified _RAWLNKRQ_ 0 0 0 L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 536.312149 1070.60975 0.46923 0.00025165 -1.6032 -0.00085983 -1.134 -0.00060817 536.3112960302618 89.457 0.31419 92.85 92.65 92.965 3.3931 0.13319 -0.00024405 NaN 2.3027 59 42 2 NaN NaN NaN NaN 0 NaN NaN 0 110510 34614 14635 22096 22107 0.0772649575972082 RAWLNKRQ 8 Unmodified _RAWLNKRQ_ 0 0 0 L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 536.312149 1070.60975 0.35447 0.00019011 -1.107 -0.00059367 -0.75249 -0.00040357 536.3113370663557 88.975 0.44798 92.598 92.338 92.786 3.6229 -0.11892 0.00028826 NaN 2.3027 97 53 3 NaN NaN NaN NaN 0 NaN NaN 0 348840 34615 14635 22096 22107 0.0772649575972082 RAWLNKRQ 8 Unmodified _RAWLNKRQ_ 0 0 0 L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense L1PA6_dup4596|chr12:342807-348918:+|3.166960484027535|0.0958532961223169|5.05|151.0|66|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 536.312149 1070.60975 0.57306 0.00030734 -1.4001 -0.00075091 -0.82707 -0.00044357 536.3112862930375 88.888 0.53996 92.717 92.45 92.99 3.8293 0.00031466 -2.6208E-05 NaN 2.3027 161 72 3 NaN NaN NaN NaN 0 NaN NaN 0 314850 34616 14635 22096 22107 0.0772649575972082 RAWLPWGHC 9 Unmodified _RAWLPWGHC_ 0 0 0 MSTA-int_dup1460|chr8:129887064-129888062:+|2.66537469609017|0.0574690860199237|5.54|151.0|10|2|sense MSTA-int_dup1460|chr8:129887064-129888062:+|2.66537469609017|0.0574690860199237|5.54|151.0|10|2|sense MSTA-int_dup1460|chr8:129887064-129888062:+|2.66537469609017|0.0574690860199237|5.54|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.7759399414062 2 563.274178 1124.5338 0.010498 5.9134E-06 0.83168 0.00046846 0.84217 0.00047437 563.274516253925 41.944 0.61226 45.624 45.25 45.863 3.6792 57 42 2 0 0 0 0.48414 1 8431 8431 2.3027 0.24298 1 67084 34617 16545 22097 22108 39686 39686 -0.02348224412048694 RAWPKGNKT 9 Unmodified _RAWPKGNKT_ 0 0 0 REV__L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|18|2|sense REV__L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 529.298583984375 2 529.298707 1056.58286 NaN NaN NaN NaN NaN NaN NaN 114.53 1 118.03 117.53 118.53 3.5039 0 0 0 0.39598 1 27893 27893 1.6526 0.45928 1 + 34618 24565 22098 22109 39687 39687 0.05683387148565089 RAYPRNHLI 9 Unmodified _RAYPRNHLI_ 0 0 0 REV__L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|59|2|sense REV__L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|59|2|sense MSMS UPN48_class_I_Rep_3 7 570.3267822265625 2 570.325257 1138.63596 NaN NaN NaN NaN NaN NaN NaN 66.368 1 69.876 69.376 70.376 3.5077 0 0 0 0.39518 1 15068 15068 1.8442 0.36234 1 + 34619 30534 22099 22110 39688 39688 0.07218764931235455 RAYRPYVW 8 Unmodified _RAYRPYVW_ 0 0 0 REV__L1MCa_dup5934|chr13:112799700-112802062:+|7.730964559885049|0.1819003713539396|5.41|151.0|11|1|sense REV__L1MCa_dup5934|chr13:112799700-112802062:+|7.730964559885049|0.1819003713539396|5.41|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 555.7965087890625 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 31.474 1 35.115 34.615 35.615 3.641 0 0 0 0.40738 1 4740 4740 0.79363 0 1 + 34620 27218 22100 22111 39689 39689 0.026642886369018015 RCAAALMASRR 11 Unmodified _RCAAALMASRR_ 0 0 0 ENSG00000132128|ENST00000617190|LRRC41;nc|ENSG00000132128|Q15345-3|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 MSMS UPN46_class_I_Rep_3 1 603.3204345703125 2 603.321334 1204.62811 NaN NaN NaN NaN NaN NaN NaN 66.571 1 66.571 66.071 67.071 0 0 0 0 0.38417 1 15111 15111 1.0715 0.10919 1 34621 2733 22101 22112 39690 39690 0.033985463477620215 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.5924377441406 3 422.592286 1264.75503 0.03171 1.34E-05 0.41394 0.00017493 0.44565 0.00018833 422.5924157346432 53.671 0.46086 53.671 53.552 54.013 0 96 49 2 0 0 0 0.6724 1 11545 11545 1.2148 1.2148 1 319480 34622 15789 22102 22113 39691 39691 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 422.59259033203125 3 422.592286 1264.75503 -0.46013 -0.00019445 1.0001 0.00042264 0.53999 0.00022819 422.5925092654554 52.148 0.49688 55.481 55.299 55.796 3.3332 81 37 3 0 0 0 0.6724 1 11618 11618 1.2148 1.2148 1 593980 34623 15789 22102 22113 39692 39692 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.9268798828125 3 422.592286 1264.75503 -0.0076643 -3.2389E-06 0.57037 0.00024103 0.5627 0.00023779 422.59252302229015 55.407 0.52859 58.962 58.694 59.222 3.5554 49 28 2 0 0 0 0.6724 1 11806 11806 1.2148 0.10508 1 323630 34624 15789 22102 22113 39693 39693 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5923767089844 3 422.592286 1264.75503 0.0044414 1.8769E-06 0.39741 0.00016794 0.40185 0.00016982 422.5924235164637 55.838 0.69858 59.393 59.144 59.843 3.5554 116 56 3 0 0 0 0.6724 1 11920 11920 1.2148 1.2148 1 195390 34625 15789 22102 22113 39694 39694 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5924377441406 3 422.592286 1264.75503 0.056886 2.4039E-05 0.61779 0.00026107 0.67467 0.00028511 422.592454928243 58.347 0.56345 61.879 61.602 62.165 3.5317 69 36 3 0 0 0 0.6724 1 12640 12640 1.2148 0.10508 1 802470 34626 15789 22102 22113 39695 39695 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.9270324707031 3 422.592286 1264.75503 0.090072 3.8064E-05 0.54217 0.00022912 0.63224 0.00026718 422.9268274867881 59.831 0.38372 63.348 63.175 63.559 3.5169 51 32 2 0 0 0 0.6724 1 13064 13064 1.2148 1.2148 1 281350 34627 15789 22102 22113 39696 39696 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5925598144531 3 422.592286 1264.75503 0.096899 4.0949E-05 0.50846 0.00021487 0.60536 0.00025582 422.5924849362251 60.155 0.33058 63.672 63.526 63.857 3.5169 48 28 2 0 0 0 0.6724 1 13227 13227 1.2148 1.2148 1 186640 34628 15789 22102 22113 39697 39697 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5928039550781 3 422.592286 1264.75503 0.10353 4.3753E-05 0.47899 0.00020242 0.58252 0.00024617 422.59244119101606 60.539 0.37082 64.052 63.816 64.186 3.5129 45 33 2 0 0 0 0.6724 1 13288 13288 1.2148 0.10508 1 244830 34629 15789 22102 22113 39698 39698 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5926208496094 3 422.592286 1264.75503 0.10926 4.6171E-05 0.38429 0.0001624 0.49355 0.00020857 422.5924859654349 60.839 0.28842 64.351 64.186 64.475 3.5128 48 28 2 0 0 0 0.6724 1 13402 13402 1.2148 0 1 276960 34630 15789 22102 22113 39699 39699 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 422.592286 1264.75503 0.025572 1.0806E-05 0.48914 0.00020671 0.51471 0.00021751 422.5924168779791 59.389 0.17135 59.389 59.269 59.441 0 -0.072027 5.4329E-05 NaN 1.2148 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 129230 34631 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 422.592286 1264.75503 0.036417 1.539E-05 0.80428 0.00033988 0.8407 0.00035527 422.59255624083613 63.002 0.22207 63.002 62.848 63.07 0 -0.27816 0.00020473 NaN 1.2148 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 122850 34632 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592286 1264.75503 -0.038778 -1.6387E-05 0.53238 0.00022498 0.4936 0.00020859 422.59248341423154 55.858 0.66185 59.336 58.941 59.603 3.4785 -0.125 0.00010914 NaN 1.2148 53 40 2 NaN NaN NaN NaN 0 NaN NaN 0 69319 34633 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592286 1264.75503 0.017292 7.3073E-06 0.8497 0.00035908 0.86699 0.00036638 422.592705664787 60.591 0.052773 63.972 63.933 63.986 3.3815 0.0018327 1.2255E-05 NaN 1.2148 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48658 34634 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.592286 1264.75503 -0.48123 -0.00020336 1.0081 0.000426 0.52685 0.00022264 422.5927032822602 60.004 0.31287 63.277 63.059 63.372 3.2731 -0.0034352 0.00046309 NaN 1.2148 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 73116 34635 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.592286 1264.75503 -0.49524 -0.00020928 1.0345 0.00043717 0.53927 0.00022789 422.59270799578513 60.621 0.13643 63.887 63.792 63.928 3.2654 -0.083685 0.00024655 NaN 1.2148 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 66675 34636 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592286 1264.75503 -0.62468 -0.00026398 1.1669 0.00049313 0.54225 0.00022915 422.59271770020155 56.246 0.2546 59.418 59.308 59.562 3.1721 -0.042804 0.00091361 NaN 1.2148 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 139260 34637 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592286 1264.75503 -0.64818 -0.00027392 1.2655 0.00053478 0.6173 0.00026087 422.5927141013139 60.806 0.16348 63.971 63.881 64.045 3.1651 0.00015657 0.00053937 NaN 1.2148 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 88424 34638 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 -0.037154 -1.5701E-05 0.46733 0.00019749 0.43017 0.00018179 422.59246130904825 56.071 0.53894 59.572 59.472 60.011 3.5014 0.11097 2.6677E-05 NaN 1.2148 95 42 3 NaN NaN NaN NaN 0 NaN NaN 0 264580 34639 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 0.04233 1.7888E-05 0.58836 0.00024864 0.63069 0.00026653 422.5924736571652 60.014 0.3253 63.494 63.326 63.651 3.4801 0.21411 -6.9003E-05 NaN 1.2148 53 25 3 NaN NaN NaN NaN 0 NaN NaN 0 311640 34640 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 422.592286 1264.75503 0.19942 8.4275E-05 0.19326 8.1671E-05 0.39269 0.00016595 422.5923323265808 56.124 0.7183 59.658 59.243 59.962 3.5333 0.19666 -0.00032078 NaN 1.2148 75 55 2 NaN NaN NaN NaN 0 NaN NaN 0 165940 34641 15789 22102 22113 0.13324215564421138 RCARIVIGKHL 11 Unmodified _RCARIVIGKHL_ 0 0 0 MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MER11B_dup347|chr10:26492497-26493576:-|3.249552730769563|0.0652408675771425|5.64|151.0|71|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 422.592286 1264.75503 0.090072 3.8064E-05 0.54217 0.00022912 0.63224 0.00026718 422.9268274867881 59.831 0.38372 63.348 63.175 63.559 3.5169 0.067479 -0.00012756 NaN 1.2148 51 32 2 NaN NaN NaN NaN 0 NaN NaN 0 281350 34642 15789 22102 22113 0.13324215564421138 RCCEHWWKE 9 Unmodified _RCCEHWWKE_ 0 0 0 Tigger1_dup6327|chr8:67262067-67262985:+|1.8962824681910333|0.0211460621656304|6.49|151.0|27|3|sense Tigger1_dup6327|chr8:67262067-67262985:+|1.8962824681910333|0.0211460621656304|6.49|151.0|27|3|sense Tigger1_dup6327|chr8:67262067-67262985:+|1.8962824681910333|0.0211460621656304|6.49|151.0|27|3|sense MSMS UPN48_class_I_Rep_2 6 638.7731323242188 2 638.771142 1275.52773 NaN NaN NaN NaN NaN NaN NaN 112.96 1 116.62 116.12 117.12 3.6648 0 0 0 0.39518 1 26934 26934 1.8442 0.19162 1 34643 33155 22103 22114 39700 39700 -0.0990111070589137 RCCNAPAF 8 Unmodified _RCCNAPAF_ 0 0 0 ENSG00000101638|ENST00000315087|ST8SIA5;nc|ENSG00000101638|O15466-2|ST8SIA5;ENST00000589088.1_1_18:44266135-44268875:-|nuORF ENSG00000101638|ENST00000315087|ST8SIA5 ENSG00000101638|ENST00000315087|ST8SIA5 MSMS UPN48_class_I_Rep_2 6 440.799560546875 2 441.191465 880.368377 NaN NaN NaN NaN NaN NaN NaN 86.518 1 90.235 89.735 90.735 3.7171 0 0 0 0.40738 1 20598 20598 0.79363 0 1 34644 1582 22104 22115 39701 39701 -0.07659199263207483 RCFCICLY 8 Unmodified _RCFCICLY_ 0 0 0 REV__L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|78|2|anti-sense REV__L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|78|2|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7266540527344 2 510.726826 1019.4391 NaN NaN NaN NaN NaN NaN NaN 116.8 1 120.4 119.9 120.9 3.6036 0 0 0 0.40738 1 28936 28936 0.79363 0 1 + 34645 25700 22105 22116 39702 39702 -0.0698424226991392 RCFLFFLL 8 Unmodified _RCFLFFLL_ 0 0 0 REV__HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|36|3|sense REV__HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|36|3|sense MSMS UPN48_class_I_Rep_2 6 529.7982177734375 2 529.796423 1057.57829 NaN NaN NaN NaN NaN NaN NaN 113.71 1 117.38 116.88 117.88 3.663 0 0 0 0.40625 1 27149 27149 2.3027 0 1 + 34646 23419 22106 22117 39703 39703 0.051807866814442605 RCFSVQIY 8 Unmodified _RCFSVQIY_ 0 0 0 REV__ENST00000489313.1_1_1:32374455-32375805:-|nuORF REV__ENST00000489313.1_1_1:32374455-32375805:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 508.7560119628906 2 508.25512 1014.49569 0.29077 0.00014779 1.4239 0.00072368 1.7146 0.00087147 508.75612744779716 62.983 0.40752 66.492 66.314 66.722 3.5091 61 29 3 0 0 0 0.82752 1 14046 14046 16.942 5.302 1 170740 + 34647 22618 22107 22118 39704 39704 -0.0109815511736997 RCFSVQIY 8 Unmodified _RCFSVQIY_ 0 0 0 REV__ENST00000489313.1_1_1:32374455-32375805:-|nuORF REV__ENST00000489313.1_1_1:32374455-32375805:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 508.7560119628906 2 508.25512 1014.49569 0.29077 0.00014779 1.4239 0.00072368 1.7146 0.00087147 508.75612744779716 62.983 0.40752 66.492 66.314 66.722 3.5091 61 29 3 0 0 0 0.72333 1 14046 14046 16.942 5.302 1 170740 + 34648 22618 22107 22118 39705 39705 -0.0109815511736997 RCHCFGCF 8 Unmodified _RCHCFGCF_ 0 0 0 L1PA5_dup5570|chr8:47548770-47554878:-|4.781325429483643|0.0655231694759179|6.19|151.0|318|3|anti-sense L1PA5_dup5570|chr8:47548770-47554878:-|4.781325429483643|0.0655231694759179|6.19|151.0|318|3|anti-sense L1PA5_dup5570|chr8:47548770-47554878:-|4.781325429483643|0.0655231694759179|6.19|151.0|318|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 486.6852722167969 2 486.685493 971.356433 0.20888 0.00010166 -0.10883 -5.2968E-05 0.10005 4.8691E-05 486.6852252348491 54.418 0.60253 54.418 54.181 54.784 0 129 67 4 0 0 0 0.82752 1 11782 11782 5.2307 0 1 546380 34649 14499 22108 22119 39706 39706 -0.13039139278032508 RCHCLHMTEL 10 Unmodified _RCHCLHMTEL_ 0 0 0 REV__ENST00000479427.5_1_2:242334894-242335056:+|nuORF REV__ENST00000479427.5_1_2:242334894-242335056:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.7803955078125 2 621.780653 1241.54675 NaN NaN NaN NaN NaN NaN NaN 50.918 1 54.135 53.635 54.635 3.2163 0 0 0 0.53105 1 11290 11290 1.4819 0 1 + 34650 22555 22109 22120 39707 39707 -0.06435897406458935 RCHFDMTTY 9 Unmodified _RCHFDMTTY_ 0 0 0 nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 MSMS UPN47_class_I_Rep_1 2 587.2451782226562 2 587.244426 1172.4743 NaN NaN NaN NaN NaN NaN NaN 67.791 1 71.152 70.652 71.652 3.3611 0 0 0 0.39518 1 16324 16324 1.8442 0.51471 1 34651 1367 22110 22121 39708 39708 -0.10503908208374924 RCHKTKQGQ 9 Unmodified _RCHKTKQGQ_ 0 0 0 REV__L1PA5_dup14|chr1:9663580-9663990:-|1.0276666356311344|0.0054819783710405|7.55|151.0|4|2|sense REV__L1PA5_dup14|chr1:9663580-9663990:-|1.0276666356311344|0.0054819783710405|7.55|151.0|4|2|sense MSMS UPN48_class_I_Rep_3 7 543.2862548828125 2 543.285274 1084.556 NaN NaN NaN NaN NaN NaN NaN 44.868 1 48.505 48.005 49.005 3.6372 0 0 0 0.39518 1 8526 8526 1.8442 0 1 + 34652 29611 22111 22122 39709 39709 0.017099552657327877 RCHWGIKTNS 10 Unmodified _RCHWGIKTNS_ 0 0 0 L1P3_dup1257|chr6:44878625-44884626:+|1.320267927406906|0.0242088410605133|5.77|151.0|374|3|anti-sense L1P3_dup1257|chr6:44878625-44884626:+|1.320267927406906|0.0242088410605133|5.77|151.0|374|3|anti-sense L1P3_dup1257|chr6:44878625-44884626:+|1.320267927406906|0.0242088410605133|5.77|151.0|374|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 601.8014526367188 2 601.298381 1200.58221 0.46316 0.0002785 0.25862 0.00015551 0.72178 0.000434 601.298045809677 35.337 0.049984 38.847 38.819 38.869 3.5101 7 5 2 0 0 0 0.56333 1 5768 5768 1.4819 0 1 80167 34653 13517 22112 22123 39710 39710 -0.01005775562771305 RCICVIIQF 9 Unmodified _RCICVIIQF_ 0 0 0 REV__L1ME3A_dup10993|chr12:29161236-29162328:-|1.423092395785832|0.0311215637270788|5.51|151.0|43|1|anti-sense REV__L1ME3A_dup10993|chr12:29161236-29162328:-|1.423092395785832|0.0311215637270788|5.51|151.0|43|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.298095703125 2 547.796097 1093.57764 0.5483 0.00030036 -0.19632 -0.00010754 0.35199 0.00019282 547.79591620888 53.199 0.65018 56.809 56.451 57.101 3.6098 73 41 2 0 0 0 0.35081 2 11193 11193;11205 10.824 0.75 1 333620 + 34654 27981 22113 22124 39711;39712 39711 0.034596239700704245 RCKKCLIVYF 10 Unmodified _RCKKCLIVYF_ 0 0 0 REV__PRIMA4_LTR_dup248|chr14:60095023-60095601:-|1.6594418716181092|0.0592836210214379|4.81|151.0|4|1|sense REV__PRIMA4_LTR_dup248|chr14:60095023-60095601:-|1.6594418716181092|0.0592836210214379|4.81|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 636.85302734375 2 636.851404 1271.68826 NaN NaN NaN NaN NaN NaN NaN 66.389 1 69.897 69.397 70.397 3.5077 0 0 0 0.53105 1 15074 15074 3.2813 0.78282 1 + 34655 32161 22114 22125 39713 39713 0.06327843958320045 RCLETYIP 8 Unmodified _RCLETYIP_ 0 0 0 REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5 REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MSMS UPN46_class_I_Rep_3 1 497.7552490234375 2 497.754953 993.495352 NaN NaN NaN NaN NaN NaN NaN 17.313 1 17.313 16.813 17.813 0 0 0 0 0.40746 1 1346 1346 0.69038 0 1 + 34656 17599 22115 22126 39714 39714 -0.0016557483722863253 RCLFGLHCVS 10 Unmodified _RCLFGLHCVS_ 0 0 0 REV__L1ME3C_dup3314|chr20:41106034-41106891:-|1.1020427637538397|0.1900643458586403|2.54|150.0|46|1|anti-sense REV__L1ME3C_dup3314|chr20:41106034-41106891:-|1.1020427637538397|0.1900643458586403|2.54|150.0|46|1|anti-sense MSMS UPN48_class_I_Rep_1 5 567.7802124023438 2 567.780979 1133.5474 NaN NaN NaN NaN NaN NaN NaN 117.6 1 121.23 120.73 121.73 3.6215 0 0 0 0.53105 1 28663 28663 1.4819 0.15237 1 + 34657 28099 22116 22127 39715 39715 -0.01402734695102481 RCLFLLFLFNF 11 Unmodified _RCLFLLFLFNF_ 0 0 0 L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.263916015625 3 478.265176 1431.7737 0.13347 6.3833E-05 -0.89404 -0.00042759 -0.76057 -0.00036375 478.26473241283105 40.506 0.81847 44.011 43.501 44.32 3.5048 98 73 2 0 0 0 0.52833 5 7298 7126;7168;7218;7260;7298 7.0371 0 1 170760 34658 12374 22117 22128 39716;39717;39718;39719;39720 39720 0.07508332415591212 RCLFLLFLFNF 11 Unmodified _RCLFLLFLFNF_ 0 0 0 L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.26470947265625 3 478.265176 1431.7737 0.13033 6.2334E-05 -0.67588 -0.00032325 -0.54554 -0.00026091 478.264834508588 39.996 0.36673 43.647 43.55 43.917 3.6509 49 33 2 0 0 0 0.65891 1 7038 7038 2.4348 0 1 134330 34659 12374 22117 22128 39721 39721 0.07508332415591212 RCLFLLFLFNF 11 Unmodified _RCLFLLFLFNF_ 0 0 0 L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense L1ME1_dup29437|chr20:1486373-1487651:+|2.66948509998613|0.0721945896462507|5.21|151.0|23|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 478.7796325683594 3 478.265176 1431.7737 0.13094 6.2622E-05 -0.27669 -0.00013233 -0.14576 -6.9711E-05 478.2651887185715 40.506 0.24693 44.157 44.058 44.305 3.6509 25 20 2 0 0 0 22.551 1 7181 7181 2.4348 0 1 83832 34660 12374 22117 22128 39722 39722 0.07508332415591212 RCLISFLTR 9 Unmodified _RCLISFLTR_ 0 0 0 REV__L1M4_dup13089|chr10:74319703-74320621:-|1.5198360893746596|0.0251082715335819|5.92|151.0|43|1|anti-sense REV__L1M4_dup13089|chr10:74319703-74320621:-|1.5198360893746596|0.0251082715335819|5.92|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 554.8035278320312 2 554.818418 1107.62228 NaN NaN NaN NaN NaN NaN NaN 42.37 1 46.049 45.549 46.549 3.6792 0 0 0 0.38784 1 8606 8606 3.5965 0 1 + 34661 24360 22118 22129 39723 39723 0.07277771107737863 RCLPVTQS 8 Unmodified _RCLPVTQS_ 0 0 0 REV__L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|52|3|sense REV__L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|52|3|sense MSMS UPN46_class_I_Rep_3 1 452.26934814453125 2 452.23947 902.464386 NaN NaN NaN NaN NaN NaN NaN 77.226 1 77.226 76.726 77.726 0 0 0 0 0.40643 1 18044 18044 2.0598 0 1 + 34662 25288 22119 22130 39724 39724 0.009252718485413425 RCLTPHLA 8 Unmodified _RCLTPHLA_ 0 0 0 AluSx1_dup6847|chr1:174832011-174832350:+|1.1491070410142914|0.0567235153779455|4.34|148.0|18|2|anti-sense AluSx1_dup6847|chr1:174832011-174832350:+|1.1491070410142914|0.0567235153779455|4.34|148.0|18|2|anti-sense AluSx1_dup6847|chr1:174832011-174832350:+|1.1491070410142914|0.0567235153779455|4.34|148.0|18|2|anti-sense MSMS UPN48_class_I_Rep_1 5 455.7500915527344 2 455.750005 909.485456 NaN NaN NaN NaN NaN NaN NaN 23.892 1 27.457 26.957 27.957 3.5655 0 0 0 0.40643 1 2558 2558 2.0598 0 1 34663 323 22120 22131 39725 39725 0.027092819480458274 RCLVTDLS 8 Unmodified _RCLVTDLS_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|63|3|anti-sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 453.7402648925781 2 453.739302 905.464052 NaN NaN NaN NaN NaN NaN NaN 105.12 1 108.86 108.36 109.36 3.7395 0 0 0 0.40404 1 25811 25811 5.2307 0 1 + 34664 23285 22121 22132 39726 39726 0.007538521286846844 RCLVTDLS 8 Unmodified _RCLVTDLS_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|63|3|anti-sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 453.73980712890625 2 453.739302 905.464052 NaN NaN NaN NaN NaN NaN NaN 104.47 1 108.19 107.69 108.69 3.7192 0 0 0 0.40404 1 24665 24665 5.2307 0 1 + 34665 23285 22121 22132 39727 39727 0.007538521286846844 RCMKIKTERK 10 Unmodified _RCMKIKTERK_ 0 0 0 REV__nc|ENSG00000140600|Q99963-4|SH3GL3 REV__nc|ENSG00000140600|Q99963-4|SH3GL3 MSMS UPN46_class_I_Rep_3 1 647.0209350585938 2 646.868117 1291.72168 NaN NaN NaN NaN NaN NaN NaN 53.608 1 53.608 53.108 54.108 0 0 0 0 0.53105 1 11546 11546 1.3295 0 1 + 34666 31997 22122 22133 39728 39728 0.08748845730201538 RCNGRGRFY 9 Unmodified _RCNGRGRFY_ 0 0 0 REV__L1MEf_dup5081|chr7:66139204-66140035:-|1.8524762838320723|0.0576928696848908|5.0|151.0|39|2|anti-sense REV__L1MEf_dup5081|chr7:66139204-66140035:-|1.8524762838320723|0.0576928696848908|5.0|151.0|39|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.777099609375 2 564.777616 1127.54068 0.42199 0.00023833 -0.69278 -0.00039127 -0.27079 -0.00015294 564.7772199848221 81.156 0.35197 84.644 84.532 84.884 3.4874 44 33 2 0 0 0 0.33654 1 20294 20294 11.64 0 1 52521 + 34667 28656 22123 22134 39729 39729 -0.017989115314549053 RCNVSMQDHN 10 Unmodified _RCNVSMQDHN_ 0 0 0 REV__nc|ENSG00000100697|Q9UPY3-3|DICER1 REV__nc|ENSG00000100697|Q9UPY3-3|DICER1 MSMS UPN47_class_I_Rep_2 3 401.83929443359375 3 401.837968 1202.49207 NaN NaN NaN NaN NaN NaN NaN 115.63 1 119.12 118.62 119.62 3.4965 0 0 0 0.53105 1 28198 28198 0.12286 0.039514 1 + 34668 18129 22124 22135 39730 39730 -0.10107192953523736 RCPLKPMR 8 Unmodified _RCPLKPMR_ 0 0 0 L1PA5_dup6151|chr9:21895880-21899384:+|3.485998891491966|0.1302104098113766|4.74|151.0|89|3|sense;L1PA6_dup3100|chr8:67352934-67359075:-|1.1685258399666305|0.0561381427852287|4.38|151.0|28|1|sense;L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|79|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|49|2|sense;L1PA3_dup8571|chr12:59751113-59757266:+|1.0179887969294132|0.0929459597853785|3.45|151.0|72|2|sense;L1PA5_dup2154|chr3:121857673-121863828:-|3.321150018743863|0.0539867527849563|5.94|151.0|157|3|sense;L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|82|2|sense L1PA5_dup6151|chr9:21895880-21899384:+|3.485998891491966|0.1302104098113766|4.74|151.0|89|3|sense L1PA5_dup6151|chr9:21895880-21899384:+|3.485998891491966|0.1302104098113766|4.74|151.0|89|3|sense MSMS UPN46_class_I_Rep_3 1 500.7668762207031 2 500.780782 999.547011 NaN NaN NaN NaN NaN NaN NaN 111.18 1 111.18 110.68 111.68 0 0 0 0 0.40746 1 27400 27400 0.69038 0 1 34669 14291 22125 22136 39731 39731 0.04721890375685689 RCPLPCRMGH 10 Unmodified _RCPLPCRMGH_ 0 0 0 ENST00000500074.2_1_3:129823014-129824450:-|nuORF;ENST00000513466.5_1_3:129823014-129828039:-|nuORF ENST00000500074.2_1_3:129823014-129824450:-|nuORF ENST00000500074.2_1_3:129823014-129824450:-|nuORF MSMS UPN47_class_I_Rep_3 4 585.2781982421875 2 585.27808 1168.54161 NaN NaN NaN NaN NaN NaN NaN 26.812 1 30.154 29.654 30.654 3.3422 0 0 0 0.53105 1 3979 3979 1.4819 0.28856 1 34670 7125 22126 22137 39732 39732 -0.03592156478430297 RCPPKGNMPK 10 Unmodified _RCPPKGNMPK_ 0 0 0 nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1 nc|ENSG00000214575|Q9BZB8-2|CPEB1 nc|ENSG00000214575|Q9BZB8-2|CPEB1 MSMS UPN48_class_I_Rep_1 5 564.2940063476562 2 564.294253 1126.57395 NaN NaN NaN NaN NaN NaN NaN 26.478 1 30.045 29.545 30.545 3.5667 0 0 0 0.53105 1 3258 3258 1.4819 0 1 34671 16823 22127 22138 39733 39733 0.015729541962173244 RCPPPHLV 8 Unmodified _RCPPPHLV_ 0 0 0 AluSq_dup55|chr1:6089701-6090001:-|1.0943992934207951|0.059695388381584|4.2|151.0|11|1|anti-sense AluSq_dup55|chr1:6089701-6090001:-|1.0943992934207951|0.059695388381584|4.2|151.0|11|1|anti-sense AluSq_dup55|chr1:6089701-6090001:-|1.0943992934207951|0.059695388381584|4.2|151.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 459.75146484375 2 459.752547 917.490542 -0.66394 -0.00030525 -0.26672 -0.00012262 -0.93065 -0.00042787 459.7518794344643 36.803 0.59815 40.05 39.713 40.311 3.247 60 42 2 0 0 0 0.82752 1 6965 6965 0.79363 0 1 54305 34672 243 22128 22139 39734 39734 0.028495858106680316 RCPTCSKSF 9 Unmodified _RCPTCSKSF_ 0 0 0 ENSG00000126603|ENST00000433375|GLIS2 ENSG00000126603|ENST00000433375|GLIS2 ENSG00000126603|ENST00000433375|GLIS2 MSMS UPN47_class_I_Rep_1 2 514.7380981445312 2 514.736237 1027.45792 NaN NaN NaN NaN NaN NaN NaN 64.417 1 67.773 67.273 68.273 3.3557 0 0 0 0.058622 1 15305 15305 34.402 4.5611 1 34673 2543 22129 22140 39735 39735 -0.05470989374498458 RCQPDQWWP 9 Unmodified _RCQPDQWWP_ 0 0 0 MER1A_dup2784|chr17:1641118-1641525:+|1.0854713004767451|0.3708460563573868|1.55|151.0|12|3|sense MER1A_dup2784|chr17:1641118-1641525:+|1.0854713004767451|0.3708460563573868|1.55|151.0|12|3|sense MER1A_dup2784|chr17:1641118-1641525:+|1.0854713004767451|0.3708460563573868|1.55|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 405.8226623535156 3 405.850314 1214.52911 NaN NaN NaN NaN NaN NaN NaN 21.395 1 21.395 20.895 21.895 0 0 0 0 0.4007 1 2385 2385 0.23584 0.076522 1 34674 15805 22130 22141 39736 39736 -0.0695715334545639 RCRDHGFG 8 Unmodified _RCRDHGFG_ 0 0 0 ENST00000496331.1_1_20:4854564-4866632:-|nuORF ENST00000496331.1_1_20:4854564-4866632:-|nuORF ENST00000496331.1_1_20:4854564-4866632:-|nuORF MSMS UPN47_class_I_Rep_2 3 474.2821350097656 2 474.21686 946.419167 NaN NaN NaN NaN NaN NaN NaN 118.42 1 121.9 121.4 122.4 3.4822 0 0 0 0.40738 1 28976 28976 0.79363 0 1 34675 7099 22131 22142 39737 39737 -0.05618533893982658 RCRFMAGAEE 10 Unmodified _RCRFMAGAEE_ 0 0 0 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 MSMS UPN48_class_I_Rep_2 6 585.2626342773438 2 585.26315 1168.51175 NaN NaN NaN NaN NaN NaN NaN 70.43 1 73.966 73.466 74.466 3.5359 0 0 0 0.53105 1 16382 16382 5.7319 0 1 34676 5489 22132 22143 39738 39738 -0.06576816942788355 RCRGRPPR 8 Unmodified _RCRGRPPR_ 0 0 0 REV__ENST00000446789.2_1_13:113621919-113623112:-|nuORF REV__ENST00000446789.2_1_13:113621919-113623112:-|nuORF MSMS UPN48_class_I_Rep_1 5 499.2813720703125 2 499.282869 996.551185 NaN NaN NaN NaN NaN NaN NaN 27.319 1 30.882 30.382 31.382 3.5629 0 0 0 0.40746 1 3500 3500 0.69038 0 1 + 34677 22364 22133 22144 39739 39739 0.052771159136113965 RCRHHFIY 8 Unmodified _RCRHHFIY_ 0 0 0 REV__ENST00000336230.10_1_1:54665916-54675667:+|nuORF REV__ENST00000336230.10_1_1:54665916-54675667:+|nuORF MSMS UPN48_class_I_Rep_1 5 566.2855224609375 2 566.285077 1130.5556 NaN NaN NaN NaN NaN NaN NaN 42.917 1 46.427 45.927 46.927 3.5103 0 0 0 0.40738 1 7995 7995 0.79363 0 1 + 34678 18600 22134 22145 39740 39740 -0.0044541966346969275 RCRKKGILVHV 11 Unmodified _RCRKKGILVHV_ 0 0 0 L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|1|1|sense L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|1|1|sense L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.9397277832031 3 436.939686 1307.79723 0.020324 8.8805E-06 0.045243 1.9768E-05 0.065567 2.8649E-05 436.9396844255266 45.584 1.7437 49.342 48.761 50.504 3.7579 190 125 2 0 0 0 0.66974 1 9109 9109 1.4551 1.4551 1 267230 34679 9318 22135 22146 39741 39741 0.15564190972781944 RCRKKGILVHV 11 Unmodified _RCRKKGILVHV_ 0 0 0 L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|1|1|sense L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|1|1|sense L1MA10_dup385|chr2:23922742-23923651:+|1.448261332453245|0.0090827234148223|7.32|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 437.2738342285156 3 436.939686 1307.79723 0.061296 2.6783E-05 0.20945 9.1518E-05 0.27075 0.0001183 436.93970691248904 45.674 1.6943 49.311 48.799 50.494 3.6369 194 115 3 0 0 0 0.67113 1 9017 9017 1.3296 0.55311 1 279400 34680 9318 22135 22146 39742 39742 0.15564190972781944 RCRLALNRY 9 Unmodified _RCRLALNRY_ 0 0 0 REV__ENST00000337386.9_2_2:191514082-191514651:+|nuORF REV__ENST00000337386.9_2_2:191514082-191514651:+|nuORF MSMS UPN48_class_I_Rep_2 6 582.8234252929688 2 582.824566 1163.63458 NaN NaN NaN NaN NaN NaN NaN 36.885 1 40.587 40.087 41.087 3.7021 0 0 0 0.39518 1 6248 6248 1.8442 0 1 + 34681 21801 22136 22147 39743 39743 0.05930807570825891 RCRLSLVLRPP 11 Unmodified _RCRLSLVLRPP_ 0 0 0 ENSG00000205502|ENST00000380392|C2CD4B ENSG00000205502|ENST00000380392|C2CD4B ENSG00000205502|ENST00000380392|C2CD4B MULTI-MSMS UPN48_class_I_Rep_2 6 437.2676086425781 3 437.267691 1308.78124 0.021564 9.4291E-06 0.20602 9.0086E-05 0.22758 9.9515E-05 437.26760578081763 48.548 1.3952 52.266 51.35 52.745 3.7175 246 95 4 0 0 0 0.66279 1 9787 9787 2.084 0.62885 1 387620 34682 5561 22137 22148 39744 39744 0.13920484735899663 RCRNLYAY 8 Unmodified _RCRNLYAY_ 0 0 0 REV__L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|19|1|sense REV__L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|19|1|sense MSMS UPN48_class_I_Rep_2 6 529.7645874023438 2 529.763643 1057.51273 NaN NaN NaN NaN NaN NaN NaN 23.738 1 27.378 26.878 27.878 3.6397 0 0 0 0.40738 1 2640 2640 0.79363 0 1 + 34683 29698 22138 22149 39745 39745 -0.013722345115638745 RCRPALALG 9 Unmodified _RCRPALALG_ 0 0 0 REV__ENST00000441095.2_1_21:47018070-47018571:+|nuORF REV__ENST00000441095.2_1_21:47018070-47018571:+|nuORF MSMS UPN47_class_I_Rep_3 4 478.80230712890625 2 478.776554 955.538554 NaN NaN NaN NaN NaN NaN NaN 67.608 1 70.799 70.299 71.299 3.1914 0 0 0 0.28335 1 16379 16379 11.64 0 1 + 34684 22331 22139 22150 39746 39746 0.059006597307075026 RCRWLRWALV 10 Unmodified _RCRWLRWALV_ 0 0 0 REV__ENSG00000175489|ENST00000339007|LRRC25 REV__ENSG00000175489|ENST00000339007|LRRC25 MSMS UPN46_class_I_Rep_3 1 453.5925598144531 3 453.592398 1357.75536 NaN NaN NaN NaN NaN NaN NaN 102.91 1 102.91 102.41 103.41 0 0 0 0 0.53105 1 25110 25110 0.77653 0 1 + 34685 20557 22140 22151 39747 39747 0.09079635284297183 RCRYRHPD 8 Unmodified _RCRYRHPD_ 0 0 0 ENSG00000135482|ENST00000257940|ZC3H10 ENSG00000135482|ENST00000257940|ZC3H10 ENSG00000135482|ENST00000257940|ZC3H10 MSMS UPN47_class_I_Rep_3 4 551.7684326171875 2 551.769791 1101.52503 NaN NaN NaN NaN NaN NaN NaN 80.329 1 83.638 83.138 84.138 3.309 0 0 0 0.40157 1 20103 20103 7.2892 2.96 1 34686 2914 22141 22152 39748 39748 -0.021671980485280073 RCSHGYYFIFY 11 Unmodified _RCSHGYYFIFY_ 0 0 0 REV__L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|89|1|anti-sense REV__L1PB1_dup12601|chr20:37963193-37965514:-|1.703111394555428|0.1109128332708613|3.94|151.0|89|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.88653564453125 3 485.888657 1454.64414 NaN NaN NaN NaN NaN NaN NaN 19.901 1 23.513 23.013 24.013 3.6118 0 0 0 0.38417 1 1909 1909 1.4551 0.67859 1 + 34687 30341 22142 22153 39749 39749 -0.0649946893431661 RCSSVRVG 8 Unmodified _RCSSVRVG_ 0 0 0 nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3 nc|ENSG00000074370|Q93084-5|ATP2A3 nc|ENSG00000074370|Q93084-5|ATP2A3 MULTI-SECPEP UPN46_class_I_Rep_3 1 432.5974426269531 2 432.229436 862.44432 0.13827 5.9766E-05 0.68139 0.00029452 0.81966 0.00035428 432.23083666200205 104.9 0.029579 104.9 104.89 104.92 0 4 2 2 0 0 0 0.72333 1 25599 25599 0.69038 0 1 59460 34688 1128 22143 22154 39750 39750 0.0075952090859345844 RCTDRDGLF 9 Unmodified _RCTDRDGLF_ 0 0 0 REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|343|2|anti-sense REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|343|2|anti-sense MSMS UPN47_class_I_Rep_1 2 541.7557373046875 2 541.756015 1081.49748 NaN NaN NaN NaN NaN NaN NaN 40.677 1 44.349 43.849 44.849 3.6719 0 0 0 0.39428 1 8091 8091 2.0598 0 1 + 34689 24920 22144 22155 39751 39751 -0.04001146099403741 RCTRKSFY 8 Unmodified _RCTRKSFY_ 0 0 0 L1PA5_dup2289|chr3:157191029-157194385:-|1.0827469776191532|0.2145458822481687|2.34|151.0|58|3|sense L1PA5_dup2289|chr3:157191029-157194385:-|1.0827469776191532|0.2145458822481687|2.34|151.0|58|3|sense L1PA5_dup2289|chr3:157191029-157194385:-|1.0827469776191532|0.2145458822481687|2.34|151.0|58|3|sense MSMS UPN47_class_I_Rep_2 3 530.7735595703125 2 530.771468 1059.52838 NaN NaN NaN NaN NaN NaN NaN 48.071 1 51.42 50.92 51.92 3.3492 0 0 0 0.40364 1 10360 10360 5.7604 0.52976 1 34690 14449 22145 22156 39752 39752 0.0010005200549585425 RCVCVSVVW 9 Unmodified _RCVCVSVVW_ 0 0 0 L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 525.7662353515625 2 525.764797 1049.51504 0.40764 0.00021432 -0.22362 -0.00011757 0.18402 9.6752E-05 525.7647119991896 64.651 0.81453 68.105 67.793 68.607 3.4541 111 65 3 0 0 0 0.36392 5 14583 14583;14593;14636;14685;14726 10.074 0.72649 1 285000 34691 9082 22146 22157 39753;39754;39755;39756;39757 39753 -0.00773522098097601 RCVCVSVVW 9 Unmodified _RCVCVSVVW_ 0 0 0 L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 525.764892578125 2 525.764797 1049.51504 0.43146 0.00022685 -0.16667 -8.7628E-05 0.2648 0.00013922 525.7646947439829 64.529 0.69736 68.003 67.668 68.365 3.4743 95 53 2 0 0 0 0.36392 5 14533 14533;14541;14583;14636;14691 10.074 0.72649 1 294500 34692 9082 22146 22157 39758;39759;39760;39761;39762 39758 -0.00773522098097601 RCVCVSVVW 9 Unmodified _RCVCVSVVW_ 0 0 0 L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.764892578125 2 525.764797 1049.51504 0.47341 0.0002489 -0.17939 -9.4315E-05 0.29403 0.00015459 525.7646747378953 64.467 0.64893 67.975 67.605 68.254 3.5083 79 58 2 0 0 0 0.36392 2 14492 14492;14532 10.074 0.72649 1 301850 34693 9082 22146 22157 39763;39764 39763 -0.00773522098097601 RCVCVSVVW 9 Unmodified _RCVCVSVVW_ 0 0 0 L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense L1M4c_dup714|chr3:197055251-197056252:-|1.8090262605162863|0.0909142136540449|4.31|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 525.7652587890625 2 525.764797 1049.51504 NaN NaN NaN NaN NaN NaN NaN 65.033 1 68.541 68.041 69.041 3.5077 0 0 0 0.31276 1 14665 14665 10.074 0 1 34694 9082 22146 22157 39765 39765 -0.00773522098097601 RCVPIPEAI 9 Unmodified _RCVPIPEAI_ 0 0 0 MLT1K_dup14839|chr17:2836658-2836977:-|1.043609152411341|0.0004148975347402|11.3|150.0|23|3|anti-sense MLT1K_dup14839|chr17:2836658-2836977:-|1.043609152411341|0.0004148975347402|11.3|150.0|23|3|anti-sense MLT1K_dup14839|chr17:2836658-2836977:-|1.043609152411341|0.0004148975347402|11.3|150.0|23|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.27789306640625 2 499.278595 996.542637 NaN NaN NaN NaN NaN NaN NaN 65.542 1 65.542 65.042 66.042 0 0 0 0 0.39518 1 14820 14820 1.8442 1.1539 1 34695 16478 22147 22158 39766 39766 0.044227044337844745 RCVSCINHIA 10 Unmodified _RCVSCINHIA_ 0 0 0 REV__TNPO3|p.T609Qfs*4|1|0.07|ENSG00000064419|chr7:128982283-128982283|G/-|frameshift_variant REV__TNPO3|p.T609Qfs*4|1|0.07|ENSG00000064419|chr7:128982283-128982283|G/-|frameshift_variant MSMS UPN48_class_I_Rep_2 6 558.2778930664062 2 558.27606 1114.53757 NaN NaN NaN NaN NaN NaN NaN 22.387 1 26.033 25.533 26.533 3.6459 0 0 0 0.53105 1 2278 2278 1.1933 0 1 + 34696 17741 22148 22159 39767 39767 -0.015119227005016 RCVWEPGRRA 10 Unmodified _RCVWEPGRRA_ 0 0 0 LTR12C_dup2591|chr21:5558836-5560154:-|1.6555613774966416|0.1024107242994706|4.01|149.0|2|1|sense LTR12C_dup2591|chr21:5558836-5560154:-|1.6555613774966416|0.1024107242994706|4.01|149.0|2|1|sense LTR12C_dup2591|chr21:5558836-5560154:-|1.6555613774966416|0.1024107242994706|4.01|149.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 615.3314208984375 2 615.319648 1228.62474 NaN NaN NaN NaN NaN NaN NaN 66.275 1 69.761 69.261 70.261 3.4866 0 0 0 0.53105 1 15129 15129 4.897 0 1 34697 15547 22149 22160 39768 39768 0.01957619565450841 RCWHLCRMNKS 11 Unmodified _RCWHLCRMNKS_ 0 0 0 L1MA9_dup1966|chr2:181477134-181478447:+|2.060691975609967|0.0420048871547498|5.62|150.0|35|2|sense L1MA9_dup1966|chr2:181477134-181478447:+|2.060691975609967|0.0420048871547498|5.62|150.0|35|2|sense L1MA9_dup1966|chr2:181477134-181478447:+|2.060691975609967|0.0420048871547498|5.62|150.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.5613098144531 3 478.561892 1432.66385 -0.13915 -6.6593E-05 -0.15902 -7.6103E-05 -0.29818 -0.0001427 478.5617085335041 45.773 1.2238 49.473 48.915 50.139 3.6999 102 72 2 0 0 0 0.68024 1 9796 9796 0.50596 0.051438 1 142510 34698 10125 22150 22161 39769 39769 -0.035177394668835404 RCWHRPHH 8 Unmodified _RCWHRPHH_ 0 0 0 ENST00000360319.8_1_X:153583382-153585815:-|nuORF ENST00000360319.8_1_X:153583382-153585815:-|nuORF ENST00000360319.8_1_X:153583382-153585815:-|nuORF MSMS UPN47_class_I_Rep_2 3 564.7728271484375 2 564.772668 1127.53078 NaN NaN NaN NaN NaN NaN NaN 16.486 1 19.873 19.373 20.373 3.3864 0 0 0 0.40798 1 1063 1063 0 0 1 34699 6317 22151 22162 39770 39770 -0.027880547462018512 RCYHWEKP 8 Unmodified _RCYHWEKP_ 0 0 0 L1MD1_dup73|chr1:37551802-37552460:+|1.13140186064693|0.0276588281116189|5.35|151.0|9|1|sense L1MD1_dup73|chr1:37551802-37552460:+|1.13140186064693|0.0276588281116189|5.35|151.0|9|1|sense L1MD1_dup73|chr1:37551802-37552460:+|1.13140186064693|0.0276588281116189|5.35|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 559.7640380859375 2 559.763643 1117.51273 NaN NaN NaN NaN NaN NaN NaN 25.595 1 29.232 28.732 29.732 3.6363 0 0 0 0.4044 1 3138 3138 4.756 0 1 34700 11977 22152 22163 39771 39771 -0.04132234511575916 RCYMLKTKT 9 Unmodified _RCYMLKTKT_ 0 0 0 ENST00000488995.1_1_2:118860178-118860235:+|nuORF ENST00000488995.1_1_2:118860178-118860235:+|nuORF ENST00000488995.1_1_2:118860178-118860235:+|nuORF MSMS UPN48_class_I_Rep_2 6 572.3045654296875 2 572.304287 1142.59402 NaN NaN NaN NaN NaN NaN NaN 30.058 1 33.693 33.193 34.193 3.6351 0 0 0 0.4007 1 4346 4346 0.52476 0 1 34701 7053 22153 22164 39772 39772 0.02842705136163204 RCYQRKMV 8 Unmodified _RCYQRKMV_ 0 0 0 ENST00000521731.1_1_8:28108019-28196754:-|nuORF ENST00000521731.1_1_8:28108019-28196754:-|nuORF ENST00000521731.1_1_8:28108019-28196754:-|nuORF MSMS UPN48_class_I_Rep_2 6 542.2797241210938 2 542.281146 1082.54774 NaN NaN NaN NaN NaN NaN NaN 27.461 1 31.092 30.592 31.592 3.6311 0 0 0 0.40746 1 3641 3641 0.69038 0 1 34702 7237 22154 22165 39773 39773 0.009766850247387993 RDDEDGDDGD 10 Unmodified _RDDEDGDDGD_ 0 0 0 UBR5|p.G1577Vfs*41|1|0.04|ENSG00000104517|chr8:102288250-102288250|C/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.34|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;ENST00000518145.1_1_8:103358389-103359193:-|nuORF UBR5|p.G1577Vfs*41|1|0.04|ENSG00000104517|chr8:102288250-102288250|C/-|frameshift_variant UBR5|p.G1577Vfs*41|1|0.04|ENSG00000104517|chr8:102288250-102288250|C/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 554.6865844726562 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 33.579 1 37.019 36.519 37.519 3.4398 0 0 0 0.53105 1 5966 5966 0.35063 0.043601 1 34703 1692 22155 22166 39774 39774 -0.1905306232467865 RDENEVLW 8 Unmodified _RDENEVLW_ 0 0 0 REV__nc|ENSG00000196408|Q8NFA2-4|NOXO1 REV__nc|ENSG00000196408|Q8NFA2-4|NOXO1 MSMS UPN47_class_I_Rep_2 3 530.7559204101562 2 530.756538 1059.49852 NaN NaN NaN NaN NaN NaN NaN 34.691 1 38.116 37.616 38.616 3.4253 0 0 0 0.40738 1 6307 6307 0.79363 0 1 + 34704 21037 22156 22167 39775 39775 -0.028846084588622034 RDERFYTQ 8 Unmodified _RDERFYTQ_ 0 0 0 REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A MSMS UPN48_class_I_Rep_3 7 557.769287109375 2 557.767437 1113.52032 NaN NaN NaN NaN NaN NaN NaN 27.123 1 30.878 30.378 31.378 3.7555 0 0 0 0.40625 1 3524 3524 2.3027 0.4585 1 + 34705 31957 22157 22168 39776 39776 -0.031898037103019306 RDGNYTKEL 9 Unmodified _RDGNYTKEL_ 0 0 0 L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|36|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|36|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.2747802734375 2 548.275095 1094.53564 0.24983 0.00013698 -0.7181 -0.00039372 -0.46827 -0.00025674 548.2746560268749 45.784 0.96363 49.029 48.525 49.489 3.2441 107 58 2 0 0 0 0.36392 1 9698 9698 10.074 10.074 1 155400 34706 11854 22158 22169 39777 39777 -0.00784936913078127 RDGRLPGV 8 Unmodified _RDGRLPGV_ 0 0 0 REV__MSTD_dup4024|chr8:96324416-96324776:-|1.043198275523704|0.0716697268497267|3.86|150.0|2|1|sense REV__MSTD_dup4024|chr8:96324416-96324776:-|1.043198275523704|0.0716697268497267|3.86|150.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 435.2510070800781 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 72.546 1 76.019 75.519 76.519 3.4732 0 0 0 0.40738 1 17033 17033 0.79363 0 1 + 34707 31918 22159 22170 39778 39778 0.048394536773685104 RDGVQLRG 8 Unmodified _RDGVQLRG_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MSMS UPN48_class_I_Rep_2 6 450.75408935546875 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 101.85 1 105.58 105.08 106.08 3.7252 0 0 0 0.40643 1 24146 24146 2.0598 0 1 + 34708 19639 22160 22171 39779 39779 0.03994552189033129 RDGVQLRG 8 Unmodified _RDGVQLRG_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MSMS UPN48_class_I_Rep_2 6 450.7539978027344 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 101.9 1 105.62 105.12 106.12 3.7252 0 0 0 0.40643 1 24155 24155 2.0598 0 1 + 34709 19639 22160 22171 39780 39780 0.03994552189033129 RDGVQLRG 8 Unmodified _RDGVQLRG_ 0 0 0 REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 450.7538146972656 2 450.754133 899.493713 0.16653 7.5065E-05 -0.32477 -0.00014639 -0.15824 -7.1327E-05 450.7538716382016 101.83 0.5373 105.6 105.42 105.96 3.776 130 77 2 0 0 0 0.82752 2 24066 24066;24128 2.0598 0 1 210840 + 34710 19639 22160 22171 39781;39782 39781 0.03994552189033129 RDHSLVLF 8 Unmodified _RDHSLVLF_ 0 0 0 L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|24|1|anti-sense L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|24|1|anti-sense L1MEc_dup15704|chr15:56947098-56947713:-|1.097810376037105|0.0156162431882003|6.14|150.0|24|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.2760009765625 2 493.774534 985.534515 0.012291 6.0691E-06 0.35596 0.00017577 0.36825 0.00018183 493.774503877221 50.157 0.48726 53.785 53.472 53.959 3.6285 44 25 2 0 0 0 0.82752 1 10981 10981 6.7232 0 1 94340 34711 13036 22161 22172 39783 39783 0.04116893508660269 RDIFFCFVM 9 Unmodified _RDIFFCFVM_ 0 0 0 REV__L1MEi_dup731|chr2:157423242-157424544:+|2.3442217550058038|0.1078826152221469|4.44|151.0|85|3|anti-sense REV__L1MEi_dup731|chr2:157423242-157424544:+|2.3442217550058038|0.1078826152221469|4.44|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_3 4 589.2805786132812 2 589.28028 1176.54601 NaN NaN NaN NaN NaN NaN NaN 38.567 1 41.808 41.308 42.308 3.2414 0 0 0 0.40038 1 7523 7523 0.6015 0 1 + 34712 28809 22162 22173 39784 39784 -0.03520368783892991 RDIMWAAH 8 Unmodified _RDIMWAAH_ 0 0 0 REV__AluSx1_dup25195|chr4:39733333-39733632:-|1.0100127940684485|0.0164523070825047|5.94|151.0|4|1|sense REV__AluSx1_dup25195|chr4:39733333-39733632:-|1.0100127940684485|0.0164523070825047|5.94|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 500.2445983886719 2 500.245086 998.47562 NaN NaN NaN NaN NaN NaN NaN 28.688 1 32.245 31.745 32.745 3.5571 0 0 0 0.40738 1 3876 3876 0.79363 0 1 + 34713 17171 22163 22174 39785 39785 -0.02367906057338587 RDKGRLVV 8 Unmodified _RDKGRLVV_ 0 0 0 L1MB7_dup6863|chr5:138523546-138523781:+|1.296493381297106|0.0025793211293633|8.97|151.0|6|2|sense L1MB7_dup6863|chr5:138523546-138523781:+|1.296493381297106|0.0025793211293633|8.97|151.0|6|2|sense L1MB7_dup6863|chr5:138523546-138523781:+|1.296493381297106|0.0025793211293633|8.97|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 74.378 1 77.615 77.115 78.115 3.2363 0 0 0 0.40738 1 18406 18406 0.79363 0 1 34714 10864 22164 22175 39786 39786 0.10392288636899139 RDKKNEILIH 10 Unmodified _RDKKNEILIH_ 0 0 0 L1MB4_dup2877|chr6:20441019-20441573:-|1.3929876201180085|0.0165999148336127|6.39|151.0|7|2|sense L1MB4_dup2877|chr6:20441019-20441573:-|1.3929876201180085|0.0165999148336127|6.39|151.0|7|2|sense L1MB4_dup2877|chr6:20441019-20441573:-|1.3929876201180085|0.0165999148336127|6.39|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 633.3688354492188 2 633.369861 1264.72517 NaN NaN NaN NaN NaN NaN NaN 85.94 1 89.555 89.055 90.055 3.6153 0 0 0 0.53105 1 21461 21461 1.3295 0.80477 1 34715 10495 22165 22176 39787 39787 0.10339555100085818 RDKKSTID 8 Unmodified _RDKKSTID_ 0 0 0 REV__nc|ENSG00000096060|Q13451-2|FKBP5 REV__nc|ENSG00000096060|Q13451-2|FKBP5 MSMS UPN47_class_I_Rep_3 4 481.7690124511719 2 481.766906 961.519259 NaN NaN NaN NaN NaN NaN NaN 37.665 1 40.906 40.406 41.406 3.2414 0 0 0 0.40643 1 7248 7248 2.0598 0 1 + 34716 18056 22166 22177 39788 39788 0.03695981920805025 RDLDSLQTL 9 Unmodified _RDLDSLQTL_ 0 0 0 AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|12|1|anti-sense AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|12|1|anti-sense AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.7861328125 2 530.785296 1059.55604 0.085721 4.5499E-05 0.45287 0.00024038 0.53859 0.00028588 531.2869952524212 45.789 0.51668 49.489 49.258 49.775 3.6999 42 30 2 0 0 0 0.36258 1 9715 9715 10.151 0 1 93736 34717 262 22167 22178 39789 39789 0.028642337467317702 RDLDSLQTL 9 Unmodified _RDLDSLQTL_ 0 0 0 AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|12|1|anti-sense AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|12|1|anti-sense AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.7853393554688 2 530.785296 1059.55604 0.22909 0.0001216 0.037088 1.9686E-05 0.26618 0.00014128 530.7855983141936 46.218 0.56992 49.462 49.196 49.766 3.2441 52 35 2 0 0 0 0.40701 1 9886 9886 7.609 0 1 87511 34718 262 22167 22178 39790 39790 0.028642337467317702 RDLFVLTE 8 Unmodified _RDLFVLTE_ 0 0 0 ENST00000451739.6_2_11:20388750-20398162:+|nuORF ENST00000451739.6_2_11:20388750-20398162:+|nuORF ENST00000451739.6_2_11:20388750-20398162:+|nuORF MSMS UPN46_class_I_Rep_3 1 496.773681640625 2 496.7742 991.533846 NaN NaN NaN NaN NaN NaN NaN 93.426 1 93.426 92.926 93.926 0 0 0 0 0.40746 1 22640 22640 0.69038 0 1 34719 6813 22168 22179 39791 39791 0.03774054068935584 RDLGLFDYE 9 Unmodified _RDLGLFDYE_ 0 0 0 MER11D_dup103|chr6:166915130-166915981:-|1.1166860545699462|0.2898579349269677|1.95|151.0|46|3|anti-sense MER11D_dup103|chr6:166915130-166915981:-|1.1166860545699462|0.2898579349269677|1.95|151.0|46|3|anti-sense MER11D_dup103|chr6:166915130-166915981:-|1.1166860545699462|0.2898579349269677|1.95|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2743530273438 2 564.272021 1126.52949 NaN NaN NaN NaN NaN NaN NaN 113.29 1 116.95 116.45 117.45 3.6568 0 0 0 0.39598 1 26933 26933 1.6526 0.17072 1 34720 15801 22169 22180 39792 39792 -0.02871455144600077 RDLIRTFV 8 Unmodified _RDLIRTFV_ 0 0 0 REV__ENSG00000022355|ENST00000393943|GABRA1 REV__ENSG00000022355|ENST00000393943|GABRA1 MULTI-MSMS UPN47_class_I_Rep_2 3 510.30322265625 2 510.303458 1018.59236 0.32507 0.00016589 -0.12534 -6.3961E-05 0.19973 0.00010192 510.30326664280807 107.84 0.17949 111.37 111.3 111.48 3.5345 55 19 4 0 0 0 0.82752 1 26098 26098 6.7232 0 1 48024000 + 34721 17611 22170 22181 39793 39793 0.08381155434085485 RDLKKRERSPR 11 Unmodified _RDLKKRERSPR_ 0 0 0 REV__ENST00000510805.1_1_4:144480699-144480816:+|nuORF REV__ENST00000510805.1_1_4:144480699-144480816:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 481.2889709472656 3 480.955052 1439.84333 -0.37409 -0.00017992 -0.41818 -0.00020112 -0.79226 -0.00038104 480.95480377951407 15.004 0.72175 18.479 18.303 19.025 3.475 222 84 4 0 0 0 0.68478 1 805 805 0.094841 0 1 205820 + 34722 22734 22171 22182 39794 39794 0.14099927408597068 RDLWRGKTL 9 Unmodified _RDLWRGKTL_ 0 0 0 ENST00000419895.3_1_11:112161044-112161188:+|nuORF ENST00000419895.3_1_11:112161044-112161188:+|nuORF ENST00000419895.3_1_11:112161044-112161188:+|nuORF MSMS UPN47_class_I_Rep_1 2 572.8355102539062 2 572.832914 1143.65128 NaN NaN NaN NaN NaN NaN NaN 102.74 1 106.52 106.02 107.02 3.7788 0 0 0 0.39598 1 25279 25279 1.6526 0 1 34723 6674 22172 22183 39795 39795 0.08519631728427157 RDLYKARCD 9 Unmodified _RDLYKARCD_ 0 0 0 nc|ENSG00000129535|P54845-2|NRL;ENSG00000129535|ENST00000561028|NRL nc|ENSG00000129535|P54845-2|NRL nc|ENSG00000129535|P54845-2|NRL MULTI-SECPEP UPN46_class_I_Rep_3 1 569.8421020507812 2 570.28494 1138.55533 0.42009 0.00023957 0.40903 0.00023326 0.82912 0.00047284 570.28499558008 67.787 0.10216 67.787 67.757 67.859 0 10 8 2 0 0 0 0.1249 1 15440 15440 1.4819 0.28856 1 72292 34724 2622 22173 22184 39796 39796 -0.008408841739765194 RDMNSYFVC 9 Unmodified _RDMNSYFVC_ 0 0 0 REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|34|2|sense REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|34|2|sense MSMS UPN47_class_I_Rep_1 2 567.738037109375 2 567.738976 1133.4634 NaN NaN NaN NaN NaN NaN NaN 26.478 1 30.241 29.741 30.741 3.7624 0 0 0 0.39518 1 3793 3793 1.8442 0.19162 1 + 34725 25304 22174 22185 39797 39797 -0.09799310582661747 RDNNKLKL 8 Unmodified _RDNNKLKL_ 0 0 0 REV__nc|ENSG00000105479|Q96M63-4|ODAD1 REV__nc|ENSG00000105479|Q96M63-4|ODAD1 MSMS UPN48_class_I_Rep_3 7 500.7978515625 2 500.79854 999.582528 NaN NaN NaN NaN NaN NaN NaN 20.759 1 24.426 23.926 24.926 3.6667 0 0 0 0.40746 1 1832 1832 0.69038 0 1 + 34726 18290 22175 22186 39798 39798 0.08271967428686366 RDPGGAPFL 9 Unmodified _RDPGGAPFL_ 0 0 0 ENST00000484738.1_1_1:244817230-244819647:+|nuORF ENST00000484738.1_1_1:244817230-244819647:+|nuORF ENST00000484738.1_1_1:244817230-244819647:+|nuORF MSMS UPN47_class_I_Rep_2 3 465.24676513671875 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 91.644 1 95.105 94.605 95.605 3.4613 0 0 0 0.3967 1 22677 22677 1.4819 0.68827 1 34727 7024 22176 22187 39799 39799 0.009566315832216787 RDPGRAVDLE 10 Unmodified _RDPGRAVDLE_ 0 0 0 ENSG00000137842|ENST00000260403|TMEM62;ENST00000570109.1_1_15:43426051-43427957:+|nuORF ENSG00000137842|ENST00000260403|TMEM62 ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN48_class_I_Rep_2 6 564.2954711914062 2 564.293819 1126.57309 NaN NaN NaN NaN NaN NaN NaN 32.806 1 36.456 35.956 36.956 3.6497 0 0 0 0.53105 1 5107 5107 3.2813 0.97858 1 34728 3048 22177 22188 39800 39800 0.014861543525057641 RDPKRQRRAL 10 Unmodified _RDPKRQRRAL_ 0 0 0 L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|50|2|sense L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|50|2|sense L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|50|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 432.88519287109375 3 432.597088 1294.76943 0.093787 4.0572E-05 0.62434 0.00027009 0.71813 0.00031066 432.59728702548654 100.45 0.21255 104.19 104.14 104.35 3.7417 49 28 2 0 0 0 0.84575 1 23869 23869 0.77653 0.078866 1 246590 34729 14866 22178 22189 39801 39801 0.13384004036947772 RDPKRQRRAL 10 Unmodified _RDPKRQRRAL_ 0 0 0 L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|50|2|sense L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|50|2|sense L1PA7_dup6162|chr7:96255811-96260216:+|1.453648002344283|0.0357147849412536|5.35|151.0|50|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 432.597088 1294.76943 0.13955 6.0369E-05 0.87243 0.00037741 1.012 0.00043778 432.59744619957786 104.26 0.18124 104.26 104.13 104.31 0 -0.0057683 -3.5672E-05 NaN 0.77653 41 20 4 NaN NaN NaN NaN 0 NaN NaN 0 1036800 34730 14866 22178 22189 0.13384004036947772 RDPRTPKIVSP 11 Unmodified _RDPRTPKIVSP_ 0 0 0 REV__ENST00000483195.5_1_2:74452054-74512997:-|nuORF REV__ENST00000483195.5_1_2:74452054-74512997:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 633.369384765625 2 633.369861 1264.72517 0.72058 0.00045639 -1.406 -0.00089052 -0.68543 -0.00043413 633.3687789266662 90.76 0.24706 90.76 90.741 90.988 0 33 24 3 0 0 0 0.67113 1 21893 21893 0.30703 0.30703 1 623800 + 34731 20981 22179 22190 39802 39802 0.1033955510006308 RDPRVLAS 8 Unmodified _RDPRVLAS_ 0 0 0 AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.2641296386719 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.82752 4 17778 17778;17815;17852;17895 8.5933 3.3626 1 270870 34732 385 22180 22191 39803;39804;39805;39806 39803 0.05435722848858404 RDPRVLAS 8 Unmodified _RDPRVLAS_ 0 0 0 AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 457.2641906738281 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.82752 4 17847 17847;17882;17921;17959 8.5933 3.3626 1 317760 34733 385 22180 22191 39807;39808;39809;39810 39807 0.05435722848858404 RDPRVLAS 8 Unmodified _RDPRVLAS_ 0 0 0 AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense AluSz6_dup29582|chr11:47542497-47542796:-|1.0645929543562112|0.0071925726859719|7.21|151.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2642822265625 2 457.264333 912.514114 -0.15313 -7.0019E-05 0.21208 9.6978E-05 0.058957 2.6959E-05 457.2643294104242 73.093 1.9641 76.32 75.19 77.155 3.2271 308 175 3 0 0 0 0.82752 2 18017 18017;18054 8.5933 3.3626 1 325030 34734 385 22180 22191 39811;39812 39811 0.05435722848858404 RDQAVEAQACY 11 Unmodified _RDQAVEAQACY_ 0 0 0 nc|ENSG00000160360|Q86YR5-3|GPSM1;nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1 nc|ENSG00000160360|Q86YR5-3|GPSM1 nc|ENSG00000160360|Q86YR5-3|GPSM1 MULTI-MSMS UPN47_class_I_Rep_1 2 627.7835693359375 2 627.282594 1252.55064 -0.062154 -3.8988E-05 -0.30124 -0.00018896 -0.3634 -0.00022795 627.2823735693521 15.557 0.30861 19.054 18.934 19.242 3.4968 51 34 2 0 0 0 0.66059 1 872 872 2.2828 0.80087 1 29868 34735 3871 22181 22192 39813 39813 -0.06553813107416318 RDQAVEAQACY 11 Unmodified _RDQAVEAQACY_ 0 0 0 nc|ENSG00000160360|Q86YR5-3|GPSM1;nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1 nc|ENSG00000160360|Q86YR5-3|GPSM1 nc|ENSG00000160360|Q86YR5-3|GPSM1 MULTI-MSMS UPN47_class_I_Rep_2 3 627.78369140625 2 627.282594 1252.55064 0.047955 3.0081E-05 -0.19841 -0.00012446 -0.15045 -9.4376E-05 627.2824227503626 15.733 0.25785 19.119 18.988 19.245 3.3864 37 27 2 0 0 0 0.67519 2 868 868;879 0.96228 0.36078 1 29253 34736 3871 22181 22192 39814;39815 39814 -0.06553813107416318 RDQAVEAQACY 11 Unmodified _RDQAVEAQACY_ 0 0 0 nc|ENSG00000160360|Q86YR5-3|GPSM1;nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1 nc|ENSG00000160360|Q86YR5-3|GPSM1 nc|ENSG00000160360|Q86YR5-3|GPSM1 MULTI-MSMS UPN47_class_I_Rep_3 4 627.2825927734375 2 627.282594 1252.55064 -0.39411 -0.00024722 0.30166 0.00018923 -0.092448 -5.7991E-05 627.282635767814 15.726 0.29348 19.092 18.956 19.25 3.3659 54 31 2 0 0 0 0.67519 1 844 844 0.96228 0.43751 1 44093 34737 3871 22181 22192 39816 39816 -0.06553813107416318 RDQDSDENE 9 Unmodified _RDQDSDENE_ 0 0 0 REV__ENSG00000149357|ENST00000278671|LAMTOR1 REV__ENSG00000149357|ENST00000278671|LAMTOR1 MSMS UPN47_class_I_Rep_3 4 554.176025390625 2 554.212889 1106.41122 NaN NaN NaN NaN NaN NaN NaN 119.22 1 122.63 122.13 123.13 3.4157 0 0 0 0.40098 1 29436 29436 0.45834 0 1 + 34738 19614 22182 22193 39817 39817 -0.13772479191106868 RDQWYRAF 8 Unmodified _RDQWYRAF_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1;ENST00000471277.5_1_21:43938564-43946018:+|nuORF ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MSMS UPN47_class_I_Rep_1 2 571.2802734375 2 571.280515 1140.54648 -0.083817 -4.7883E-05 -0.81828 -0.00046747 -0.9021 -0.00051535 571.2800578035378 29.797 0.71298 33.555 33.223 33.936 3.7578 111 51 3 0 0 0 0.82752 1 4705 4705 0.79363 0 1 139650 34739 3859 22183 22194 39818 39818 -0.018174897481685548 RDRAKAIL 8 Unmodified _RDRAKAIL_ 0 0 0 L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 471.7958679199219 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 82.215 1 85.552 85.052 86.052 3.337 0 0 0 0.40581 1 20601 20601 2.8892 0 1 34740 10175 22184 22195 39819 39819 0.10392288636899139 RDRCCCCCF 9 Unmodified _RDRCCCCCF_ 0 0 0 REV__AluJo_dup68287|chr18:32055015-32055320:+|1.1953313573709108|0.0112329905728879|6.73|151.0|17|1|anti-sense REV__AluJo_dup68287|chr18:32055015-32055320:+|1.1953313573709108|0.0112329905728879|6.73|151.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 554.6874389648438 2 554.68431 1107.35407 NaN NaN NaN NaN NaN NaN NaN 117.18 1 117.18 116.68 117.68 0 0 0 0 0.39518 1 29036 29036 1.8442 1.1539 1 + 34741 17016 22185 22196 39820 39820 -0.1953167906967792 RDRCCCCCF 9 Unmodified _RDRCCCCCF_ 0 0 0 REV__AluJo_dup68287|chr18:32055015-32055320:+|1.1953313573709108|0.0112329905728879|6.73|151.0|17|1|anti-sense REV__AluJo_dup68287|chr18:32055015-32055320:+|1.1953313573709108|0.0112329905728879|6.73|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_1 5 554.6854248046875 2 554.68431 1107.35407 NaN NaN NaN NaN NaN NaN NaN 21.571 1 25.124 24.624 25.624 3.5533 0 0 0 0.40098 1 1988 1988 0.45834 0.45834 1 + 34742 17016 22185 22196 39821 39821 -0.1953167906967792 RDRKKRKRKE 10 Unmodified _RDRKKRKRKE_ 0 0 0 ENST00000468290.1_1_9:136198707-136199617:-|nuORF;ENSG00000148296|ENST00000372022|SURF6 ENST00000468290.1_1_9:136198707-136199617:-|nuORF ENST00000468290.1_1_9:136198707-136199617:-|nuORF MSMS UPN47_class_I_Rep_3 4 467.2952575683594 3 467.295409 1398.8644 NaN NaN NaN NaN NaN NaN NaN 85.007 1 88.368 87.868 88.868 3.3615 0 0 0 0.53105 1 21323 21323 0.15932 0 1 34743 3496 22186 22197 39822 39822 0.18091937508120282 RDRLDDIIV 9 Unmodified _RDRLDDIIV_ 0 0 0 nc|ENSG00000176018|Q7Z3D4-2|LYSMD3;nc|ENSG00000176018|Q7Z3D4-3|LYSMD3;ENSG00000176018|ENST00000315948|LYSMD3 nc|ENSG00000176018|Q7Z3D4-2|LYSMD3 nc|ENSG00000176018|Q7Z3D4-2|LYSMD3 MULTI-MSMS UPN48_class_I_Rep_2 6 557.8147583007812 2 557.814387 1113.61422 0.49698 0.00027722 -0.34536 -0.00019265 0.15161 8.4573E-05 557.8141549351641 100.71 0.7469 104.45 103.99 104.74 3.7417 154 105 2 0 0 0 0.48846 1 23951 23951 1.8442 1.8442 1 111240 34744 4744 22187 22198 39823 39823 0.061959153919815435 RDRPRVASQRL 11 Unmodified _RDRPRVASQRL_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 451.9326171875 3 451.932248 1352.77491 NaN NaN NaN NaN NaN NaN NaN 92.464 1 96.227 95.727 96.727 3.7629 0 0 0 0.38417 1 22003 22003 0.50596 0 1 34745 11286 22188 22199 39824 39824 0.11263682828735 RDRPRVASQRL 11 Unmodified _RDRPRVASQRL_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 451.93280029296875 3 451.932248 1352.77491 0.17608 7.9575E-05 -2.2615 -0.0010221 -2.0855 -0.00094249 452.26519831293166 92.699 0.10028 96.577 96.497 96.597 3.8782 20 13 2 0 0 0 0.6724 1 21967 21967 1.2148 0.51716 1 346790 34746 11286 22188 22199 39825 39825 0.11263682828735 RDRPRVASQRL 11 Unmodified _RDRPRVASQRL_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 451.932248 1352.77491 0.19031 8.6008E-05 0.46937 0.00021212 0.65968 0.00029813 452.266751555056 96.578 0.14732 96.578 96.501 96.649 0 -0.070072 -0.00025362 NaN 1.2148 30 17 3 NaN NaN NaN NaN 0 NaN NaN 0 187840 34747 11286 22188 22199 0.11263682828735 RDRPRVASQRL 11 Unmodified _RDRPRVASQRL_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 451.932248 1352.77491 0.040308 1.8217E-05 0.24195 0.00010934 0.28225 0.00012756 451.932544399819 93.198 0.041397 96.667 96.654 96.695 3.4687 0.01811 -0.00056195 NaN 1.2148 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 29406 34748 11286 22188 22199 0.11263682828735 RDRPRVASQRL 11 Unmodified _RDRPRVASQRL_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 451.932248 1352.77491 -0.16335 -7.3822E-05 1.1628 0.00052552 0.99949 0.0004517 451.9327255822166 93.366 0.042511 96.771 96.734 96.776 3.4052 0.12297 0.00068658 NaN 1.2148 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 49224 34749 11286 22188 22199 0.11263682828735 RDRPRVASQRL 11 Unmodified _RDRPRVASQRL_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|29|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 451.932248 1352.77491 0.17608 7.9575E-05 -2.2615 -0.0010221 -2.0855 -0.00094249 452.26519831293166 92.699 0.10028 96.577 96.497 96.597 3.8782 -0.071005 -0.0039562 NaN 1.2148 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 346790 34750 11286 22188 22199 0.11263682828735 RDRREGERE 9 Unmodified _RDRREGERE_ 0 0 0 REV__L1ME1_dup13114|chr7:30394441-30395358:-|1.056713894533613|0.2737589167036174|1.95|151.0|32|3|sense REV__L1ME1_dup13114|chr7:30394441-30395358:-|1.056713894533613|0.2737589167036174|1.95|151.0|32|3|sense MSMS UPN48_class_I_Rep_3 7 601.803466796875 2 601.802874 1201.59119 NaN NaN NaN NaN NaN NaN NaN 33.201 1 36.89 36.39 37.39 3.6896 0 0 0 0.3967 1 5132 5132 1.4819 0 1 + 34751 27600 22189 22200 39826 39826 -0.001537106727482751 RDRSMGFQ 8 Unmodified _RDRSMGFQ_ 0 0 0 LTR23_dup311|chr6:24982749-24983187:+|1.0607043982883004|0.0288957816483048|5.2|150.0|1|1|sense LTR23_dup311|chr6:24982749-24983187:+|1.0607043982883004|0.0288957816483048|5.2|150.0|1|1|sense LTR23_dup311|chr6:24982749-24983187:+|1.0607043982883004|0.0288957816483048|5.2|150.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 498.73687744140625 2 498.737625 995.460698 0.33803 0.00016859 -0.57928 -0.00028891 -0.24125 -0.00012032 498.73726073108844 62.27 0.65993 65.744 65.405 66.065 3.4738 83 49 2 0 0 0 0.82752 1 13848 13848 5.2307 0.90143 1 166170 34752 15601 22190 22201 39827 39827 -0.03721397925301062 RDRTNRLY 8 Unmodified _RDRTNRLY_ 0 0 0 MLT2A2_dup1971|chr8:99125013-99125558:-|1.6436993503430513|0.0436848999652704|5.23|151.0|18|1|anti-sense MLT2A2_dup1971|chr8:99125013-99125558:-|1.6436993503430513|0.0436848999652704|5.23|151.0|18|1|anti-sense MLT2A2_dup1971|chr8:99125013-99125558:-|1.6436993503430513|0.0436848999652704|5.23|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.2965087890625 2 547.296696 1092.57884 -0.16647 -9.111E-05 2.7062 0.0014811 2.5397 0.00139 547.298191995878 32.006 0.41919 35.305 35.057 35.476 3.2991 35 31 2 0 0 0 0.82752 1 5527 5527 6.7232 0 1 40004 34753 16500 22191 22202 39828 39828 0.03625297654866699 RDSLLKTTSL 10 Unmodified _RDSLLKTTSL_ 0 0 0 Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.31689453125 2 567.32987 1132.64519 0.4595 0.00026069 -0.1091 -6.1897E-05 0.3504 0.00019879 567.3296974668336 84.53 0.23005 84.53 84.323 84.553 0 27 19 2 0 0 0 0.56333 1 20074 20074 1.4819 0 1 172330 34754 436 22192 22203 39829 39829 0.08417068706239661 RDTVFYLFH 9 Unmodified _RDTVFYLFH_ 0 0 0 L1PBb|chr1:42209310-42211970:+|1.7226742218942213|0.0659036205296916|4.71|151.0|137|2|anti-sense L1PBb|chr1:42209310-42211970:+|1.7226742218942213|0.0659036205296916|4.71|151.0|137|2|anti-sense L1PBb|chr1:42209310-42211970:+|1.7226742218942213|0.0659036205296916|4.71|151.0|137|2|anti-sense MSMS UPN48_class_I_Rep_2 6 599.304443359375 2 599.306198 1196.59784 NaN NaN NaN NaN NaN NaN NaN 41.841 1 45.592 45.092 46.092 3.7508 0 0 0 0.40038 1 7681 7681 0.6015 0 1 34755 15410 22193 22204 39830 39830 0.007408342258713674 RDVFMHFF 8 Unmodified _RDVFMHFF_ 0 0 0 REV__L1PA7_dup10235|chr12:22676014-22677908:-|1.1856334173488698|0.2046607165001518|2.53|151.0|65|1|anti-sense REV__L1PA7_dup10235|chr12:22676014-22677908:-|1.1856334173488698|0.2046607165001518|2.53|151.0|65|1|anti-sense MSMS UPN46_class_I_Rep_3 1 549.7638549804688 2 549.763112 1097.51167 NaN NaN NaN NaN NaN NaN NaN 102.14 1 102.14 101.64 102.64 0 0 0 0 0.40738 1 24924 24924 0.79363 0.10326 1 + 34756 29971 22194 22205 39831 39831 -0.0331844888046362 RDWQPWAP 8 Unmodified _RDWQPWAP_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|14|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 528.2584838867188 2 528.256508 1054.49846 NaN NaN NaN NaN NaN NaN NaN 23.584 1 23.584 23.084 24.084 0 0 0 0 0.40738 1 2982 2982 0.79363 0 1 + 34757 24895 22195 22206 39832 39832 -0.02660563668200666 RDYYERLY 8 Unmodified _RDYYERLY_ 0 0 0 L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|121|3|sense L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|121|3|sense L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|121|3|sense MSMS UPN48_class_I_Rep_2 6 589.2837524414062 2 589.285463 1176.55637 NaN NaN NaN NaN NaN NaN NaN 18.341 1 21.992 21.492 22.492 3.6509 0 0 0 0.40753 1 1214 1214 0.6015 0.076735 1 34758 9954 22196 22207 39833 39833 -0.024843465334242865 REAHLHHA 8 Unmodified _REAHLHHA_ 0 0 0 REV__ENST00000465385.5_1_22:24113378-24121604:+|nuORF REV__ENST00000465385.5_1_22:24113378-24121604:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.75390625 2 485.751924 969.489296 NaN NaN NaN NaN NaN NaN NaN 19.49 1 23.139 22.639 23.639 3.6497 0 0 0 0.40625 1 1496 1496 2.3027 0 1 + 34759 18078 22197 22208 39834 39834 0.0033308776612557267 REAKEGHKLSL 11 Unmodified _REAKEGHKLSL_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MSMS UPN47_class_I_Rep_2 3 633.8709716796875 2 634.359493 1266.70443 NaN NaN NaN NaN NaN NaN NaN 87.819 1 91.266 90.766 91.766 3.4471 0 0 0 0.38417 1 21832 21832 2.4985 1.0166 1 + 34760 20385 22198 22209 39835 39835 0.08174964720433309 REANQQQQF 9 Unmodified _REANQQQQF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS UPN47_class_I_Rep_1 2 574.7760009765625 2 574.775793 1147.53703 -0.13023 -7.4851E-05 0.01486 8.5412E-06 -0.11537 -6.6309E-05 574.775821779386 16.585 0.51706 20.107 19.92 20.437 3.5224 92 57 2 0 0 0 0.39745 2 1061 1061;1091 8.1555 1.9497 1 40147 34761 5383 22199 22210 39836;39837 39836 -0.030833028243250737 REANQQQQF 9 Unmodified _REANQQQQF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS UPN47_class_I_Rep_2 3 574.7755126953125 2 574.775793 1147.53703 0.048045 2.7615E-05 -0.25313 -0.00014549 -0.20508 -0.00011788 574.775632670618 16.782 0.5549 20.169 19.949 20.504 3.3864 106 63 2 0 0 0 0.33908 3 1101 1101;1129;1140 11.495 2.1116 1 42880 34762 5383 22199 22210 39838;39839;39840 39838 -0.030833028243250737 REARGGGRGPR 11 Unmodified _REARGGGRGPR_ 0 0 0 REV__ENST00000266269.9_2_22:31741767-31741980:-|nuORF REV__ENST00000266269.9_2_22:31741767-31741980:-|nuORF MSMS UPN46_class_I_Rep_3 1 584.822021484375 2 584.823944 1167.63333 NaN NaN NaN NaN NaN NaN NaN 54.054 1 54.054 53.554 54.554 0 0 0 0 0.38417 1 11676 11676 1.0715 0 1 + 34763 21597 22200 22211 39841 39841 0.05622309526279423 REASHSLLEKL 11 Unmodified _REASHSLLEKL_ 0 0 0 REV__nc|ENSG00000160293|P52735-3|VAV2 REV__nc|ENSG00000160293|P52735-3|VAV2 MULTI-MSMS UPN48_class_I_Rep_1 5 643.3616333007812 2 641.859326 1281.7041 0.43648 0.00028016 -0.54519 -0.00034994 -0.10871 -6.978E-05 641.8589112161012 105.49 1.0192 109.12 109.02 110.04 3.6277 496 137 6 0 0 0 0.61292 1 25555 25555 4.897 2.1618 1 4204000 + 34764 19883 22201 22212 39842 39842 0.07451545000571969 REAVPVIK 8 Unmodified _REAVPVIK_ 0 0 0 L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|16|2|sense L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|16|2|sense L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|16|2|sense MSMS UPN47_class_I_Rep_1 2 456.2875061035156 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 23.683 1 27.413 26.913 27.913 3.7298 0 0 0 0.40625 1 2970 2970 2.3027 0 1 34765 8721 22202 22213 39843 39843 0.10114368031088361 REDAVLEYL 9 Unmodified _REDAVLEYL_ 0 0 0 ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MSMS UPN48_class_I_Rep_1 5 554.2870483398438 2 554.287671 1106.56079 NaN NaN NaN NaN NaN NaN NaN 60.966 1 64.44 63.94 64.94 3.4737 0 0 0 0.28608 1 13529 13529 11.495 0 1 34766 3458 22203 22214 39844 39844 0.011771178894605328 REDAVLEYL 9 Unmodified _REDAVLEYL_ 0 0 0 ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MSMS UPN48_class_I_Rep_1 5 554.2872924804688 2 554.287671 1106.56079 NaN NaN NaN NaN NaN NaN NaN 61.1 1 64.574 64.074 65.074 3.4737 0 0 0 0.20399 1 13567 13567 16.149 0 1 34767 3458 22203 22214 39845 39845 0.011771178894605328 REDAVLEYL 9 Unmodified _REDAVLEYL_ 0 0 0 ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MULTI-MSMS UPN48_class_I_Rep_2 6 554.2871704101562 2 554.287671 1106.56079 0.55941 0.00031007 -0.79939 -0.00044309 -0.23998 -0.00013302 554.2871676758331 60.846 0.4476 64.325 64.141 64.589 3.4785 61 41 2 0 0 0 0.20317 2 13464 13464;13511 20.415 0 1 227500 34768 3458 22203 22214 39846;39847 39846 0.011771178894605328 REDAVLEYL 9 Unmodified _REDAVLEYL_ 0 0 0 ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MSMS UPN48_class_I_Rep_3 7 554.2877807617188 2 554.287671 1106.56079 NaN NaN NaN NaN NaN NaN NaN 60.721 1 64.233 63.733 64.733 3.5129 0 0 0 0.21832 1 13364 13364 15.248 0 1 34769 3458 22203 22214 39848 39848 0.011771178894605328 REDAVLEYL 9 Unmodified _REDAVLEYL_ 0 0 0 ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF ENSG00000147065|ENST00000360270|MSN ENSG00000147065|ENST00000360270|MSN MSMS UPN48_class_I_Rep_3 7 554.2882080078125 2 554.287671 1106.56079 NaN NaN NaN NaN NaN NaN NaN 60.905 1 64.418 63.918 64.918 3.5129 0 0 0 0.21832 1 13416 13416 15.248 3.7538 1 34770 3458 22203 22214 39849 39849 0.011771178894605328 REDVLHDFL 9 Unmodified _REDVLHDFL_ 0 0 0 REV__L1MD1_dup4646|chr11:11868072-11869669:-|1.107423614197775|0.0291479292137041|5.25|151.0|97|2|anti-sense REV__L1MD1_dup4646|chr11:11868072-11869669:-|1.107423614197775|0.0291479292137041|5.25|151.0|97|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.2918090820312 2 572.293288 1142.57202 -0.099531 -5.6961E-05 -0.11465 -6.5613E-05 -0.21418 -0.00012257 572.2932213963009 35.617 0.86015 38.872 38.531 39.391 3.2547 107 56 3 0 0 0 0.48846 1 6772 6772 1.8442 0 1 173070 + 34771 27347 22204 22215 39850 39850 0.006439399836153825 REEEPSEW 8 Unmodified _REEEPSEW_ 0 0 0 ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000497693.1_1_9:37430482-37431094:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF MSMS UPN46_class_I_Rep_3 1 531.2301025390625 2 531.230353 1060.44615 NaN NaN NaN NaN NaN NaN NaN 76.686 1 76.686 76.186 77.186 0 0 0 0 0.40746 1 17903 17903 0.69038 0 1 34772 6466 22205 22216 39851 39851 -0.0816519159247946 REEIAKQR 8 Unmodified _REEIAKQR_ 0 0 0 REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A MSMS UPN47_class_I_Rep_1 2 515.294921875 2 515.293622 1028.57269 NaN NaN NaN NaN NaN NaN NaN 103.38 1 107.16 106.66 107.66 3.7788 0 0 0 0.40625 1 25418 25418 2.3027 0 1 + 34773 17450 22206 22217 39852 39852 0.05954779423313994 REEKRKRQRIM 11 Unmodified _REEKRKRQRIM_ 0 0 0 L1MC4_dup3993|chr2:241297309-241297794:+|1.3286086103403931|0.0179959924456294|6.21|151.0|17|3|sense L1MC4_dup3993|chr2:241297309-241297794:+|1.3286086103403931|0.0179959924456294|6.21|151.0|17|3|sense L1MC4_dup3993|chr2:241297309-241297794:+|1.3286086103403931|0.0179959924456294|6.21|151.0|17|3|sense MSMS UPN47_class_I_Rep_3 4 510.63458251953125 3 510.631692 1528.87325 NaN NaN NaN NaN NaN NaN NaN 95.318 1 98.728 98.228 99.228 3.4095 0 0 0 0.38417 1 23697 23697 0.094841 0 1 34774 11495 22207 22218 39853 39853 0.12996543082272183 REEPSNPFL 9 Unmodified _REEPSNPFL_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|1|intron nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS UPN48_class_I_Rep_1 5 544.772705078125 2 544.772188 1087.52982 0.42023 0.00022893 -0.27883 -0.0001519 0.1414 7.7028E-05 544.7718837318741 46.19 0.43421 49.709 49.552 49.986 3.5192 47 28 2 0 0 0 0.39745 2 9005 9005;9054 8.1555 0.8663 1 94119 34775 2339 22208 22219 39854;39855 39854 -0.0104403542475211 REEPSNPFL 9 Unmodified _REEPSNPFL_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|1|intron nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS UPN48_class_I_Rep_2 6 544.7723388671875 2 544.772188 1087.52982 0.39514 0.00021526 -0.25832 -0.00014073 0.13682 7.4534E-05 544.77211777947 45.936 0.61716 49.694 49.408 50.025 3.7579 69 42 2 0 0 0 0.35123 2 8939 8900;8939 10.8 8.1555 1 107400 34776 2339 22208 22219 39856;39857 39857 -0.0104403542475211 REEPSNPFL 9 Unmodified _REEPSNPFL_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;ENSG00000120733.14,KDM3B,chr5,+,I8.1,138392262,138393170|48|11.66|1|intron nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS UPN48_class_I_Rep_3 7 544.7728881835938 2 544.772188 1087.52982 0.40844 0.00022251 -0.09431 -5.1377E-05 0.31414 0.00017113 544.7721814637645 46.098 0.73337 49.735 49.427 50.16 3.6369 72 48 2 0 0 0 0.35123 3 8872 8872;8920;8974 10.8 8.1555 1 122940 34777 2339 22208 22219 39858;39859;39860 39858 -0.0104403542475211 REEQDVLNLL 10 Unmodified _REEQDVLNLL_ 0 0 0 REV__nc|ENSG00000157625|Q8N5C8-2|TAB3 REV__nc|ENSG00000157625|Q8N5C8-2|TAB3 MULTI-MSMS UPN47_class_I_Rep_3 4 614.83056640625 2 614.830234 1227.64592 0.4427 0.00027219 -0.069324 -4.2622E-05 0.37338 0.00022956 615.3316882847215 66.352 0.55963 69.537 69.222 69.782 3.1853 71 42 2 0 0 0 0.53414 1 15990 15990 7.609 0 1 171500 + 34778 19825 22209 22220 39861 39861 0.041198633552767205 REERPKSE 8 Unmodified _REERPKSE_ 0 0 0 ENST00000258534.12_1_12:102315880-102316018:+|nuORF ENST00000258534.12_1_12:102315880-102316018:+|nuORF ENST00000258534.12_1_12:102315880-102316018:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 516.2662353515625 2 515.767437 1029.52032 -0.01499 -7.7312E-06 -4.1833 -0.0021576 -4.1983 -0.0021654 515.7656585374234 45.185 0.10539 48.885 48.82 48.925 3.6999 9 6 2 0 0 0 0.72333 1 9474 9474 1.8442 0.36234 1 25869 34779 5939 22210 22221 39862 39862 0.006741962897194753 REERRRRRRA 10 Unmodified _REERRRRRRA_ 0 0 0 ENSG00000171786|ENST00000302101|NHLH1 ENSG00000171786|ENST00000302101|NHLH1 ENSG00000171786|ENST00000302101|NHLH1 MSMS UPN47_class_I_Rep_2 3 480.9545593261719 3 480.954157 1439.84064 NaN NaN NaN NaN NaN NaN NaN 16.155 1 19.542 19.042 20.042 3.3864 0 0 0 0.53105 1 985 985 0.15932 0 1 34780 4545 22211 22222 39863 39863 0.138315167942892 REESDELD 8 Unmodified _REESDELD_ 0 0 0 REV__THE1B-int_dup1642|chr5:116328802-116330374:-|2.531352555806424|0.0265253624666314|6.58|150.0|1|1|sense REV__THE1B-int_dup1642|chr5:116328802-116330374:-|2.531352555806424|0.0265253624666314|6.58|150.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 496.7120666503906 2 496.711993 991.409433 NaN NaN NaN NaN NaN NaN NaN 115.49 1 119.11 118.61 119.61 3.6282 0 0 0 0.40738 1 28097 28097 0.79363 0 1 + 34781 32244 22212 22223 39864 39864 -0.08661488209043 REESFLLEF 9 Unmodified _REESFLLEF_ 0 0 0 L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|163|3|anti-sense L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|163|3|anti-sense L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|163|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 585.2960205078125 2 585.295496 1168.57644 0.41699 0.00024406 0.45689 0.00026742 0.87388 0.00051148 585.2959051705534 55.762 0.53954 58.94 58.665 59.205 3.1779 65 35 2 0 0 0 0.47493 1 12707 12707 3.2813 0.97858 1 107630 34782 14117 22213 22224 39865 39865 -0.001105955934690428 REESGSLLGTD 11 Unmodified _REESGSLLGTD_ 0 0 0 REV__DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant REV__DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant MSMS UPN46_class_I_Rep_3 1 581.9440307617188 2 582.280574 1162.5466 NaN NaN NaN NaN NaN NaN NaN 41.124 1 41.124 40.624 41.624 0 0 0 0 0.38417 1 8032 8032 2.7352 0.23671 1 + 34783 17506 22214 22225 39866 39866 -0.028175793294622054 REFPDRLVGY 10 Unmodified _REFPDRLVGY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS UPN47_class_I_Rep_1 2 626.327392578125 2 626.327662 1250.64077 0.19861 0.00012439 -0.055541 -3.4787E-05 0.14306 8.9605E-05 626.3275176373912 46.659 0.86248 50.359 49.999 50.861 3.6999 123 56 3 0 0 0 0.42663 3 9966 9883;9921;9966 17.443 10.341 1 182560 34784 3585 22215 22226 39867;39868;39869 39869 0.02547604283313376 REFPDRLVGY 10 Unmodified _REFPDRLVGY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS UPN47_class_I_Rep_2 3 626.3273315429688 2 626.327662 1250.64077 0.30413 0.00019048 -0.0076257 -4.7762E-06 0.2965 0.00018571 626.3276932844435 47.106 0.69687 50.458 50.201 50.898 3.3515 99 45 3 0 0 0 0.54148 3 10074 10034;10074;10113 6.6304 3.6351 1 137660 34785 3585 22215 22226 39870;39871;39872 39871 0.02547604283313376 REFPDRLVGY 10 Unmodified _REFPDRLVGY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS UPN47_class_I_Rep_3 4 626.327880859375 2 626.327662 1250.64077 0.34563 0.00021648 0.028289 1.7718E-05 0.37392 0.0002342 626.3275487639265 47.388 0.64765 50.629 50.14 50.788 3.2405 75 41 2 0 0 0 0.51963 3 10161 10111;10161;10222 9.544 2.4423 1 107720 34786 3585 22215 22226 39873;39874;39875 39874 0.02547604283313376 REFRAKKKD 9 Unmodified _REFRAKKKD_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2-5|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2-5|LOXHD1 MULTI-MSMS UPN47_class_I_Rep_2 3 589.342041015625 2 589.343646 1176.67274 0.54083 0.00031873 -1.2825 -0.00075582 -0.74165 -0.00043709 589.3427411325795 84.168 0.35182 87.591 87.52 87.872 3.4232 68 45 2 0 0 0 0.49187 1 21022 21022 1.4819 0 1 92512 + 34787 20211 22216 22227 39876 39876 0.09147016757128767 REFYKRIE 8 Unmodified _REFYKRIE_ 0 0 0 REV__L1PA11_dup2970|chr11:74825138-74825822:+|1.4998598223116069|0.2008069676406632|2.9|151.0|14|2|sense REV__L1PA11_dup2970|chr11:74825138-74825822:+|1.4998598223116069|0.2008069676406632|2.9|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 571.3126220703125 2 570.811648 1139.60874 0.4106 0.00023437 -0.078135 -4.4601E-05 0.33246 0.00018977 570.8116213117154 43.195 0.6489 46.706 46.406 47.055 3.5103 94 51 2 0 0 0 0.82752 1 8087 8087 1.8442 0 1 220840 + 34788 26081 22217 22228 39877 39877 0.04452236600195647 REFYKRIE 8 Unmodified _REFYKRIE_ 0 0 0 REV__L1PA11_dup2970|chr11:74825138-74825822:+|1.4998598223116069|0.2008069676406632|2.9|151.0|14|2|sense REV__L1PA11_dup2970|chr11:74825138-74825822:+|1.4998598223116069|0.2008069676406632|2.9|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.8121337890625 2 570.811648 1139.60874 0.38051 0.0002172 -0.16821 -9.6017E-05 0.2123 0.00012118 570.8115708665905 42.954 0.70649 46.596 46.324 47.03 3.6415 111 58 2 0 0 0 0.82752 1 8055 8055 1.8442 0 1 265320 + 34789 26081 22217 22228 39878 39878 0.04452236600195647 REGEIAQFL 9 Unmodified _REGEIAQFL_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MULTI-MSMS UPN47_class_I_Rep_1 2 531.782470703125 2 531.782556 1061.55056 0.31691 0.00016853 -0.00022218 -1.1815E-07 0.31669 0.00016841 531.7824303966756 55.336 0.86262 58.814 58.554 59.416 3.4785 85 51 3 0 0 0 0.20317 1 12546 12546 20.415 0 1 199570 34790 1948 22218 22229 39879 39879 0.022245549549097632 REGEIAQFL 9 Unmodified _REGEIAQFL_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MULTI-MSMS UPN47_class_I_Rep_2 3 531.7825317382812 2 531.782556 1061.55056 0.3506 0.00018644 -0.089561 -4.7627E-05 0.26104 0.00013882 531.782470665805 55.703 0.9171 59.013 58.705 59.622 3.3102 86 54 2 0 0 0 0.33908 1 12668 12668 11.495 0 1 187540 34791 1948 22218 22229 39880 39880 0.022245549549097632 REGEIAQFL 9 Unmodified _REGEIAQFL_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MULTI-MSMS UPN47_class_I_Rep_3 4 531.7826538085938 2 531.782556 1061.55056 0.35981 0.00019134 -0.045571 -2.4234E-05 0.31424 0.00016711 531.7823799653474 55.914 0.75717 59.092 58.764 59.521 3.1779 96 51 3 0 0 0 0.20317 2 12817 12775;12817 20.415 0 1 170870 34792 1948 22218 22229 39881;39882 39882 0.022245549549097632 REGFVFIL 8 Unmodified _REGFVFIL_ 0 0 0 REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|100|3|anti-sense REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|100|3|anti-sense MSMS UPN46_class_I_Rep_3 1 490.7818908691406 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.15 1 113.15 112.65 113.65 0 0 0 0 0.40738 1 27945 27945 0.79363 0 1 + 34793 30588 22219 22230 39883 39883 0.05850965656816243 REGLLFTAL 9 Unmodified _REGLLFTAL_ 0 0 0 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 MULTI-MSMS UPN48_class_I_Rep_1 5 510.2979431152344 2 510.297842 1018.58113 0.28615 0.00014602 -0.23111 -0.00011793 0.05504 2.8087E-05 510.29771441238086 68.035 0.64867 71.487 71.13 71.778 3.4517 65 53 2 0 0 0 0.33908 1 15668 15668 11.495 0.67078 1 94066 34794 2520 22220 22231 39884 39884 0.07258333339939327 REGLLFTAL 9 Unmodified _REGLLFTAL_ 0 0 0 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 MULTI-MSMS UPN48_class_I_Rep_2 6 510.2977294921875 2 510.297842 1018.58113 0.33048 0.00016864 -0.16296 -8.3158E-05 0.16752 8.5484E-05 510.297737781534 67.771 0.2797 71.268 71.059 71.338 3.4964 34 26 2 0 0 0 0.33908 1 15578 15578 11.495 2.1116 1 105180 34795 2520 22220 22231 39885 39885 0.07258333339939327 REGLLFTAL 9 Unmodified _REGLLFTAL_ 0 0 0 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 MULTI-MSMS UPN48_class_I_Rep_2 6 510.800048828125 2 510.297842 1018.58113 0.32898 0.00016788 -0.73686 -0.00037602 -0.40788 -0.00020814 510.2974864029018 67.943 0.19718 71.452 71.366 71.564 3.5083 17 13 2 0 0 0 0.33908 1 15629 15629 11.495 2.7493 1 83134 34796 2520 22220 22231 39886 39886 0.07258333339939327 REGLLFTAL 9 Unmodified _REGLLFTAL_ 0 0 0 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 MULTI-MSMS UPN48_class_I_Rep_3 7 510.298095703125 2 510.297842 1018.58113 0.33912 0.00017305 -0.39126 -0.00019966 -0.052134 -2.6604E-05 510.7989752255434 67.773 0.39838 71.281 71.067 71.466 3.5077 46 34 2 0 0 0 0.32682 1 15476 15476 12.241 2.8575 1 100140 34797 2520 22220 22231 39887 39887 0.07258333339939327 REGLLFTAL 9 Unmodified _REGLLFTAL_ 0 0 0 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 510.297842 1018.58113 0.33048 0.00016864 -0.16296 -8.3158E-05 0.16752 8.5484E-05 510.297737781534 67.771 0.2797 71.268 71.059 71.338 3.4964 -0.0064089 0.00013222 NaN 12.241 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 105180 34798 2520 22220 22231 0.07258333339939327 REGQSSQNTQ 10 Unmodified _REGQSSQNTQ_ 0 0 0 Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|164|3|anti-sense Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|164|3|anti-sense Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|164|3|anti-sense MSMS UPN47_class_I_Rep_3 4 567.7589721679688 2 567.76034 1133.50613 NaN NaN NaN NaN NaN NaN NaN 29.226 1 32.55 32.05 33.05 3.3235 0 0 0 0.53105 1 4694 4694 2.9952 0.41776 1 34799 33216 22221 22232 39888 39888 -0.055285009292447285 REGRKFEE 8 Unmodified _REGRKFEE_ 0 0 0 REV__ENST00000473145.5_1_3:52445341-52446899:+|nuORF REV__ENST00000473145.5_1_3:52445341-52446899:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 525.7694091796875 2 525.76998 1049.52541 -0.28707 -0.00015093 0.55313 0.00029082 0.26606 0.00013989 525.7698963324315 27.146 0.53942 30.645 30.413 30.953 3.4986 97 47 3 0 0 0 0.82752 1 4092 4092 1.8442 0 1 88815 + 34800 21767 22222 22233 39889 39889 0.0026250015232562873 REGRKFEE 8 Unmodified _REGRKFEE_ 0 0 0 REV__ENST00000473145.5_1_3:52445341-52446899:+|nuORF REV__ENST00000473145.5_1_3:52445341-52446899:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 525.7692260742188 2 525.76998 1049.52541 -0.31764 -0.00016701 -0.036264 -1.9067E-05 -0.35391 -0.00018607 525.7698310016782 27.348 0.54208 30.69 30.446 30.988 3.3422 84 46 2 0 0 0 0.82752 2 4124 4124;4138 3.5965 0 1 72700 + 34801 21767 22222 22233 39890;39891 39890 0.0026250015232562873 REGRKRKRRKV 11 Unmodified _REGRKRKRRKV_ 0 0 0 L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|30|2|sense L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|30|2|sense L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 490.75103759765625 3 490.318436 1467.93348 NaN NaN NaN NaN NaN NaN NaN 26.244 1 29.739 29.239 30.239 3.4945 0 0 0 0.38417 1 3768 3768 0.073264 0.073264 1 34802 9012 22223 22234 39892 39892 0.21823021527643505 REHDDEMFDR 10 Unmodified _REHDDEMFDR_ 0 0 0 REV__nc|ENSG00000024048|Q8IWV8|UBR2 REV__nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS UPN48_class_I_Rep_1 5 450.525146484375 3 450.522814 1348.54661 0.043586 1.9637E-05 3.8046 0.0017141 3.8482 0.0017337 450.5244944611264 74.724 0.19382 78.214 78.086 78.28 3.49 22 18 2 0 0 0 0.56371 1 17682 17682 1.2148 0 1 94214 + 34803 31933 22224 22235 39893 39893 -0.11371902601126749 REHDDEMFDR 10 Unmodified _REHDDEMFDR_ 0 0 0 REV__nc|ENSG00000024048|Q8IWV8|UBR2 REV__nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MATCH UPN48_class_I_Rep_2 6 3 450.522814 1348.54661 0.14478 6.5226E-05 3.6115 0.0016271 3.7563 0.0016923 450.524601765888 74.682 0.063141 78.272 78.258 78.321 3.59 0.15252 0.00012251 NaN 1.2148 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 45513 + 34804 31933 22224 22235 -0.11371902601126749 REHKKMGK 8 Unmodified _REHKKMGK_ 0 0 0 L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|10|1|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|10|1|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.2952880859375 2 507.287285 1012.56002 0.35113 0.00017812 -1.5199 -0.00077103 -1.1688 -0.00059291 507.2862843527115 108.79 0.48016 112.33 112.16 112.64 3.5333 72 53 2 0 0 0 0.82752 1 26443 26443 6.7232 0.96273 1 8485900 34805 9550 22225 22236 39894 39894 0.054240447594452235 REHKKMGK 8 Unmodified _REHKKMGK_ 0 0 0 L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|10|1|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|10|1|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 507.2863464355469 2 507.287285 1012.56002 0.27308 0.00013853 -1.6402 -0.00083206 -1.3671 -0.00069353 507.28630162593146 108.75 0.25057 112.42 112.29 112.54 3.6751 42 27 2 0 0 0 0.82752 1 25772 25772 7.2892 0 1 6485400 34806 9550 22225 22236 39895 39895 0.054240447594452235 REHTRRKLTL 10 Unmodified _REHTRRKLTL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS UPN48_class_I_Rep_2 6 437.2657470703125 3 437.265227 1308.77385 NaN NaN NaN NaN NaN NaN NaN 24.793 1 28.429 27.929 28.929 3.6363 0 0 0 0.53105 1 2927 2927 0.62683 0 1 34807 5248 22226 22237 39896 39896 0.13181468459833923 REHYRISSSC 10 Unmodified _REHYRISSSC_ 0 0 0 REV__ENSG00000132010|ENST00000334213|ZNF20 REV__ENSG00000132010|ENST00000334213|ZNF20 MULTI-MSMS UPN47_class_I_Rep_1 2 619.2874145507812 2 619.290753 1236.56695 0.44484 0.00027549 -1.4565 -0.00090203 -1.0117 -0.00062654 619.2882934725876 61.299 1.7177 64.68 64.305 66.022 3.3815 418 122 6 0 0 0 0.56078 1 14699 14699 3.2813 0 1 2777200 + 34808 18998 22227 22238 39897 39897 -0.04186687150649959 REHYRISSSC 10 Unmodified _REHYRISSSC_ 0 0 0 REV__ENSG00000132010|ENST00000334213|ZNF20 REV__ENSG00000132010|ENST00000334213|ZNF20 MULTI-MSMS UPN47_class_I_Rep_3 4 619.2888793945312 2 619.290753 1236.56695 0.3977 0.00024629 -1.1863 -0.00073469 -0.78865 -0.0004884 619.2883532864964 61.597 1.5242 64.763 64.356 65.88 3.1667 392 105 6 0 0 0 0.56078 1 14835 14835 3.2813 0 1 3147500 + 34809 18998 22227 22238 39898 39898 -0.04186687150649959 REIFYGLIP 9 Unmodified _REIFYGLIP_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN48_class_I_Rep_2 6 554.6865844726562 2 554.313492 1106.61243 NaN NaN NaN NaN NaN NaN NaN 39.546 1 43.276 42.776 43.776 3.7297 0 0 0 0.39518 1 7029 7029 1.8442 0 1 + 34810 21014 22228 22239 39899 39899 0.0633890637402601 REILCPKK 8 Unmodified _REILCPKK_ 0 0 0 AluJr_dup56999|chr12:104531212-104531480:+|1.6378885642205516|0.0058586746013122|8.13|151.0|3|1|sense AluJr_dup56999|chr12:104531212-104531480:+|1.6378885642205516|0.0058586746013122|8.13|151.0|3|1|sense AluJr_dup56999|chr12:104531212-104531480:+|1.6378885642205516|0.0058586746013122|8.13|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 493.792724609375 2 493.794412 985.574271 NaN NaN NaN NaN NaN NaN NaN 53.929 1 57.443 56.943 57.943 3.5143 0 0 0 0.3903 1 11368 11368 11.64 0.52583 1 34811 162 22229 22240 39900 39900 0.08090697187719798 REIQAQNFF 9 Unmodified _REIQAQNFF_ 0 0 0 ENST00000498022.1_1_2:71304672-71305635:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK ENST00000498022.1_1_2:71304672-71305635:+|nuORF ENST00000498022.1_1_2:71304672-71305635:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 577.2689819335938 2 576.793455 1151.57236 0.24078 0.00013888 0.3315 0.00019121 0.57228 0.00033009 576.7936622751138 50.616 0.57718 54.244 53.988 54.565 3.6285 42 24 2 0 0 0 0.08417 1 11102 11102 27.223 16.399 1 128050 34812 2463 22230 22241 39901 39901 0.002633597034673585 REIQAQNFF 9 Unmodified _REIQAQNFF_ 0 0 0 ENST00000498022.1_1_2:71304672-71305635:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK ENST00000498022.1_1_2:71304672-71305635:+|nuORF ENST00000498022.1_1_2:71304672-71305635:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 576.793701171875 2 576.793455 1151.57236 0.47902 0.00027629 -0.037238 -2.1479E-05 0.44178 0.00025482 576.7932947865743 51.026 0.63425 54.365 53.999 54.633 3.3386 44 34 2 0 0 0 0.30497 1 11281 11281 13.615 2.7909 1 70540 34813 2463 22230 22241 39902 39902 0.002633597034673585 REIQAQNFF 9 Unmodified _REIQAQNFF_ 0 0 0 ENST00000498022.1_1_2:71304672-71305635:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK ENST00000498022.1_1_2:71304672-71305635:+|nuORF ENST00000498022.1_1_2:71304672-71305635:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 576.793455 1151.57236 0.54226 0.00031277 -0.010624 -6.128E-06 0.53163 0.00030664 576.793365269158 51.139 0.5758 54.355 54.082 54.658 3.2163 0.033649 -0.00012592 NaN 27.223 47 27 2 NaN NaN NaN NaN 0 NaN NaN 0 124280 34814 2463 22230 22241 0.002633597034673585 REIQEVQAF 9 Unmodified _REIQEVQAF_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MULTI-MSMS UPN47_class_I_Rep_1 2 560.2927856445312 2 560.293288 1118.57202 0.014752 8.2654E-06 -0.061638 -3.4535E-05 -0.046886 -2.627E-05 560.2930378699787 41.766 0.4029 45.446 45.214 45.617 3.6792 40 28 2 0 0 0 0.44742 1 8453 8453 5.2969 1.3525 1 66507 34815 2569 22231 22242 39903 39903 0.017479399836020093 REIQLVYHH 9 Unmodified _REIQLVYHH_ 0 0 0 L1ME2_dup10684|chr15:85110335-85112117:-|1.0162572148704598|0.2017545716965045|2.33|151.0|87|1|anti-sense L1ME2_dup10684|chr15:85110335-85112117:-|1.0162572148704598|0.2017545716965045|2.33|151.0|87|1|anti-sense L1ME2_dup10684|chr15:85110335-85112117:-|1.0162572148704598|0.2017545716965045|2.33|151.0|87|1|anti-sense MSMS UPN47_class_I_Rep_1 2 597.8218383789062 2 597.822547 1193.63054 NaN NaN NaN NaN NaN NaN NaN 60.482 1 63.864 63.364 64.364 3.3815 0 0 0 0.39518 1 14118 14118 1.8442 0 1 34816 12460 22232 22243 39904 39904 0.0414704134875592 REIQTAVRL 9 Unmodified _REIQTAVRL_ 0 0 0 ENSG00000180596|ENST00000396984|H2BC4;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000180596|ENST00000396984|H2BC4 ENSG00000180596|ENST00000396984|H2BC4 MULTI-MSMS UPN48_class_I_Rep_1 5 543.32470703125 2 543.324922 1084.63529 0.45568 0.00024758 -0.29686 -0.00016129 0.15882 8.629E-05 543.3245706166699 35.219 0.82294 38.733 38.45 39.273 3.5144 166 81 3 0 0 0 0.052941 2 5764 5728;5764 47.732 12.8 1 291530 34817 4894 22233 22244 39905;39906 39906 0.09635925491488706 REIQTAVRL 9 Unmodified _REIQTAVRL_ 0 0 0 ENSG00000180596|ENST00000396984|H2BC4;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000180596|ENST00000396984|H2BC4 ENSG00000180596|ENST00000396984|H2BC4 MULTI-MSMS UPN48_class_I_Rep_2 6 543.3247680664062 2 543.324922 1084.63529 0.46344 0.0002518 -0.44541 -0.000242 0.018035 9.799E-06 543.3245092680344 35.068 0.87145 38.742 38.421 39.292 3.6735 165 84 3 0 0 0 0.16799 3 5696 5696;5735;5773 23.79 3.5234 1 336680 34818 4894 22233 22244 39907;39908;39909 39907 0.09635925491488706 REIQTAVRL 9 Unmodified _REIQTAVRL_ 0 0 0 ENSG00000180596|ENST00000396984|H2BC4;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000180596|ENST00000396984|H2BC4 ENSG00000180596|ENST00000396984|H2BC4 MULTI-MSMS UPN48_class_I_Rep_3 7 543.3248901367188 2 543.324922 1084.63529 0.40992 0.00022272 -0.38835 -0.000211 0.02157 1.1719E-05 543.3245234853083 34.981 0.9281 38.653 38.375 39.303 3.6721 201 100 3 0 0 0 0.14474 4 5664 5556;5592;5627;5664 26.021 6.6588 1 369270 34819 4894 22233 22244 39910;39911;39912;39913 39913 0.09635925491488706 REIQYAPLSFH 11 Unmodified _REIQYAPLSFH_ 0 0 0 nc|ENSG00000168995|Q9Y286-2|SIGLEC7;ENSG00000168995|ENST00000317643|SIGLEC7 nc|ENSG00000168995|Q9Y286-2|SIGLEC7 nc|ENSG00000168995|Q9Y286-2|SIGLEC7 MULTI-MSMS UPN48_class_I_Rep_3 7 454.5729064941406 3 454.238455 1359.69353 0.095375 4.3323E-05 -0.27075 -0.00012298 -0.17537 -7.9662E-05 454.23827916206386 46.789 0.78762 50.425 50.04 50.828 3.6363 107 48 3 0 0 0 0.63233 1 9167 9167 4.4062 0.81348 1 327830 34820 4398 22234 22245 39914 39914 0.02807562346129089 REKEELLY 8 Unmodified _REKEELLY_ 0 0 0 REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MSMS UPN47_class_I_Rep_3 4 540.79248046875 2 540.290214 1078.56587 0.36367 0.00019649 0.63165 0.00034128 0.99532 0.00053776 540.2905307300293 61.104 0.20404 64.269 64.238 64.443 3.1651 30 18 2 0 0 0 0.82752 1 14399 14399 10.824 0.75 1 82555 + 34821 18627 22235 22246 39915 39915 0.02973421752108152 REKEELLY 8 Unmodified _REKEELLY_ 0 0 0 REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MATCH UPN47_class_I_Rep_2 3 2 540.290214 1078.56587 0.42419 0.00022919 0.46933 0.00025357 0.89352 0.00048276 540.2905757900949 61.139 0.20037 64.405 64.343 64.544 3.2654 0.067848 -0.00010667 NaN 10.824 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 83605 + 34822 18627 22235 22246 0.02973421752108152 REKHKVFLR 9 Unmodified _REKHKVFLR_ 0 0 0 nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 MSMS UPN46_class_I_Rep_3 1 404.9169921875 3 404.915646 1211.72511 NaN NaN NaN NaN NaN NaN NaN 33.989 1 33.989 33.489 34.489 0 0 0 0 0.38784 1 6015 6015 2.086 0.63089 1 34823 4180 22236 22247 39916 39916 0.12771599890743346 REKIAAKN 8 Unmodified _REKIAAKN_ 0 0 0 ENSG00000204390|ENST00000375654|HSPA1L ENSG00000204390|ENST00000375654|HSPA1L ENSG00000204390|ENST00000375654|HSPA1L MULTI-MSMS UPN48_class_I_Rep_2 6 465.27978515625 2 465.279983 928.545414 0.18849 8.7701E-05 -0.58562 -0.00027248 -0.39713 -0.00018478 465.27964499065337 79.802 0.38338 83.446 83.096 83.479 3.6446 68 43 2 0 0 0 0.82752 1 18938 18938 2.3027 0 1 255240 34824 5521 22237 22248 39917 39917 0.07828295882939074 REKKKKKKKQI 11 Unmodified _REKKKKKKKQI_ 0 0 0 REV__AluSz6_dup45328|chr20:4785028-4785367:+|1.0974549106077247|0.2095450070665822|2.39|151.0|5|2|sense REV__AluSz6_dup45328|chr20:4785028-4785367:+|1.0974549106077247|0.2095450070665822|2.39|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 481.33697509765625 3 481.327827 1440.96165 NaN NaN NaN NaN NaN NaN NaN 81.523 1 85.18 84.68 85.68 3.6567 0 0 0 0.38417 1 19352 19352 0.094841 0 1 + 34825 17235 22238 22249 39918 39918 0.25880906664383474 REKKLDTK 8 Unmodified _REKKLDTK_ 0 0 0 L1MB7_dup19988|chr17:47035158-47036217:-|1.3414483434646045|0.3030274417379616|2.15|151.0|23|2|sense;L1MB7_dup19954|chr17:45531374-45532428:+|4.31655051200555|0.0840415344854854|5.68|151.0|35|3|sense L1MB7_dup19988|chr17:47035158-47036217:-|1.3414483434646045|0.3030274417379616|2.15|151.0|23|2|sense L1MB7_dup19988|chr17:47035158-47036217:-|1.3414483434646045|0.3030274417379616|2.15|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 509.3056640625 2 509.306198 1016.59784 0.3138 0.00015982 -0.4192 -0.0002135 -0.1054 -5.368E-05 509.30589033709197 83.946 0.61351 87.628 87.304 87.918 3.6814 113 65 2 0 0 0 0.82752 1 19977 19977 0.79363 0 1 209530 34826 10782 22239 22250 39919 39919 0.09020834225884755 REKKYITY 8 Unmodified _REKKYITY_ 0 0 0 HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.8092651367188 2 550.808574 1099.60259 0.5436 0.00029942 -0.022705 -1.2506E-05 0.5209 0.00028691 550.8085742553118 55.32 0.85856 58.829 58.492 59.351 3.5082 120 54 3 0 0 0 0.82752 5 11737 11737;11777;11819;11866;11917 67.344 7.3375 1 314460 34827 7821 22240 22251 39920;39921;39922;39923;39924 39920 0.05677718368656315 REKKYITY 8 Unmodified _REKKYITY_ 0 0 0 HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.8069458007812 2 550.808574 1099.60259 0.61552 0.00033903 -0.028933 -1.5937E-05 0.58658 0.0003231 550.8085315961081 55.262 0.86146 58.818 58.463 59.324 3.5559 109 49 3 0 0 0 0.82752 4 11900 11700;11783;11871;11900 77.984 6.8507 1 340430 34828 7821 22240 22251 39925;39926;39927;39928 39928 0.05677718368656315 REKKYITY 8 Unmodified _REKKYITY_ 0 0 0 HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense HAL1_dup16492|chr12:25200228-25200913:+|1.0453714151344529|0.455549574746283|1.2|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.8087158203125 2 550.808574 1099.60259 0.28503 0.000157 0.31408 0.000173 0.59912 0.00033 550.8087403314114 55.279 0.80684 58.834 58.504 59.311 3.5554 107 47 3 0 0 0 0.82752 2 11718 11718;11769 67.344 5.9864 1 313690 34829 7821 22240 22251 39929;39930 39929 0.05677718368656315 REKLALAL 8 Unmodified _REKLALAL_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENSG00000100796.17,PPP4R3A,chr14,-,I11.1,91466417,91470836|25|13.71|1|intron;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENSG00000100796.17,PPP4R3A,chr14,-,I11.1,91466417,91470836|25|13.71|2|intron;ENSG00000100796.17,PPP4R3A,chr14,-,I11.1,91466417,91470836|25|13.71|3|intron;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS UPN48_class_I_Rep_2 6 457.29498291015625 2 457.295102 912.575651 0.21075 9.6376E-05 -0.010152 -4.6423E-06 0.2006 9.1734E-05 457.2949893668777 63.865 0.99744 67.339 66.866 67.863 3.4743 218 75 4 0 0 0 0.82752 1 14304 14304 32.305 0 1 1512200 34830 1531 22241 22252 39931 39931 0.11586654548113984 REKLALAL 8 Unmodified _REKLALAL_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENSG00000100796.17,PPP4R3A,chr14,-,I11.1,91466417,91470836|25|13.71|1|intron;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENSG00000100796.17,PPP4R3A,chr14,-,I11.1,91466417,91470836|25|13.71|2|intron;ENSG00000100796.17,PPP4R3A,chr14,-,I11.1,91466417,91470836|25|13.71|3|intron;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS UPN48_class_I_Rep_3 7 457.2949523925781 2 457.295102 912.575651 0.20079 9.1819E-05 -0.062197 -2.8442E-05 0.13859 6.3377E-05 457.294972898104 63.825 1.0612 67.334 66.721 67.782 3.5083 225 87 3 0 0 0 0.82752 1 14170 14170 25.399 0 1 1500600 34831 1531 22241 22252 39932 39932 0.11586654548113984 REKPFICLLP 10 Unmodified _REKPFICLLP_ 0 0 0 REV__L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|4|1|sense REV__L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.90179443359375 3 405.902126 1214.68455 -0.37816 -0.0001535 -0.76129 -0.00030901 -1.1395 -0.00046251 405.90174609110016 21.811 0.29306 21.811 21.668 21.961 0 55 33 2 0 0 0 0.56247 1 2481 2481 2.086 0.89267 1 71408 + 34832 25263 22242 22253 39933 39933 0.08579497456094032 REKPSVLY 8 Unmodified _REKPSVLY_ 0 0 0 nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS UPN46_class_I_Rep_3 1 496.2957458496094 2 496.282192 990.549831 NaN NaN NaN NaN NaN NaN NaN 36.141 1 36.141 35.641 36.641 0 0 0 0 0.40604 1 6665 6665 2.5775 0 1 34833 2162 22243 22254 39934 39934 0.05417760305851971 REKRKEPTLK 10 Unmodified _REKRKEPTLK_ 0 0 0 MER11C_dup879|chr20:56520679-56521654:-|1.2559795278925467|0.2313669445267357|2.44|151.0|21|2|sense MER11C_dup879|chr20:56520679-56521654:-|1.2559795278925467|0.2313669445267357|2.44|151.0|21|2|sense MER11C_dup879|chr20:56520679-56521654:-|1.2559795278925467|0.2313669445267357|2.44|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 642.8917236328125 2 642.890961 1283.76737 NaN NaN NaN NaN NaN NaN NaN 97.206 1 97.206 96.706 97.706 0 0 0 0 0.53105 1 23648 23648 1.4819 0 1 34834 15800 22244 22255 39935 39935 0.13683530508455988 REKRMKRNKQR 11 Unmodified _REKRMKRNKQR_ 0 0 0 L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|60|2|sense L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|60|2|sense L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|60|2|sense MSMS UPN47_class_I_Rep_1 2 510.634765625 3 510.635437 1528.88448 NaN NaN NaN NaN NaN NaN NaN 97.522 1 101.31 100.81 101.81 3.7861 0 0 0 0.38417 1 24164 24164 0.50596 0.13928 1 34835 14818 22245 22256 39936 39936 0.1411936517642971 RELDLQRNY 9 Unmodified _RELDLQRNY_ 0 0 0 ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS MULTI-MSMS UPN47_class_I_Rep_1 2 603.8136596679688 2 603.814919 1205.61528 -0.03383 -2.0427E-05 0.37088 0.00022394 0.33705 0.00020352 603.8150310850631 31.98 0.55108 35.699 35.397 35.948 3.7191 76 43 2 0 0 0 0.43153 1 5381 5381 6.2058 0 1 88795 34836 4658 22246 22257 39937 39937 0.020701297609093672 RELDRSKFS 9 Unmodified _RELDRSKFS_ 0 0 0 REV__ENSG00000155897|ENST00000286355|ADCY8 REV__ENSG00000155897|ENST00000286355|ADCY8 MULTI-MSMS UPN47_class_I_Rep_1 2 569.3049926757812 2 569.304187 1136.59382 -0.072799 -4.1445E-05 0.5992 0.00034113 0.5264 0.00029968 569.304365852445 30.989 0.4678 34.719 34.573 35.041 3.7293 49 37 2 0 0 0 0.43982 1 5189 5189 5.7319 0.50118 1 76657 + 34837 19777 22247 22258 39938 39938 0.03098744732187697 RELEAALHSH 10 Unmodified _RELEAALHSH_ 0 0 0 ENST00000308440.10_1_11:67056880-67057314:+|nuORF;ENST00000514166.5_1_11:67056880-67057734:+|nuORF;ENST00000512101.5_1_11:67056880-67058074:+|nuORF;ENSG00000172932|ENST00000511455|ANKRD13D ENST00000308440.10_1_11:67056880-67057314:+|nuORF ENST00000308440.10_1_11:67056880-67057314:+|nuORF MSMS UPN48_class_I_Rep_2 6 581.802734375 2 581.801811 1161.58907 NaN NaN NaN NaN NaN NaN NaN 43.19 1 46.951 46.451 47.451 3.7617 0 0 0 0.53105 1 8087 8087 1.4819 0 1 34838 4598 22248 22259 39939 39939 0.01473860589430842 RELELRHIK 9 Unmodified _RELELRHIK_ 0 0 0 REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1 REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1 MSMS UPN46_class_I_Rep_3 1 597.3588256835938 2 597.359296 1192.70404 NaN NaN NaN NaN NaN NaN NaN 95.222 1 95.222 94.722 95.722 0 0 0 0 0.39518 1 23111 23111 1.8442 0 1 + 34839 20776 22249 22260 39940 39940 0.11539589791209437 RELFYDDEI 9 Unmodified _RELFYDDEI_ 0 0 0 REV__ENST00000503042.5_1_5:1325854-1325929:-|nuORF REV__ENST00000503042.5_1_5:1325854-1325929:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 600.2836303710938 2 600.282586 1198.55062 0.57351 0.00034427 -0.49926 -0.0002997 0.074255 4.4574E-05 600.2824033691994 58.826 0.64922 62.325 62.057 62.706 3.4987 81 39 3 0 0 0 0.36392 1 12794 12794 10.074 0 1 267980 + 34840 21736 22250 22261 39941 39941 -0.04071489835769171 RELKWHLKERE 11 Unmodified _RELKWHLKERE_ 0 0 0 ENSG00000227729|ENST00000557640|RD3L ENSG00000227729|ENST00000557640|RD3L ENSG00000227729|ENST00000557640|RD3L MULTI-MSMS UPN48_class_I_Rep_3 7 508.6195068359375 3 508.619558 1522.83684 0.18137 9.2248E-05 -0.26414 -0.00013434 -0.082767 -4.2097E-05 508.9536889389062 35.698 1.279 39.364 38.906 40.185 3.6667 295 129 3 0 0 0 0.68478 1 5764 5764 0.094841 0 1 370760 34841 5670 22251 22262 39942 39942 0.09633989457188363 RELLRHPA 8 Unmodified _RELLRHPA_ 0 0 0 REV__MLT1J_dup4985|chr5:76878932-76879408:+|2.138374556289926|0.0038384200715764|9.12|150.0|24|3|anti-sense REV__MLT1J_dup4985|chr5:76878932-76879408:+|2.138374556289926|0.0038384200715764|9.12|150.0|24|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 39.516 1 39.516 39.016 40.016 0 0 0 0 0.40604 1 7599 7599 2.5775 0 1 + 34842 31780 22252 22263 39943 39943 0.0766340449412155 RELLYCYIY 9 Unmodified _RELLYCYIY_ 0 0 0 Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|23|1|sense Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|23|1|sense Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 618.3094482421875 2 618.310092 1234.60563 NaN NaN NaN NaN NaN NaN NaN 19.318 1 22.67 22.17 23.17 3.3514 0 0 0 0.40038 1 1783 1783 0.6015 0 1 34843 32992 22253 22264 39944 39944 -0.002287745688590803 RELLYYPA 8 Unmodified _RELLYYPA_ 0 0 0 L1MA6_dup2868|chr9:41396923-41397503:-|1.4098154484443917|0.0279725900500268|5.66|150.0|13|2|sense;L1MA6_dup2856|chr9:40067996-40068576:+|1.2793226072083006|0.0405433618491405|4.98|150.0|14|2|sense L1MA6_dup2868|chr9:41396923-41397503:-|1.4098154484443917|0.0279725900500268|5.66|150.0|13|2|sense L1MA6_dup2868|chr9:41396923-41397503:-|1.4098154484443917|0.0279725900500268|5.66|150.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 512.759765625 2 512.776742 1023.53893 NaN NaN NaN NaN NaN NaN NaN 27.696 1 31.327 30.827 31.827 3.6311 0 0 0 0.40738 1 3707 3707 0.79363 0 1 34844 9975 22254 22265 39945 39945 0.028103579315597926 RELMQVVLA 9 Unmodified _RELMQVVLA_ 0 0 0 nc|ENSG00000106367|P61966-2|AP1S1;ENSG00000106367|ENST00000337619|AP1S1 nc|ENSG00000106367|P61966-2|AP1S1 nc|ENSG00000106367|P61966-2|AP1S1 MSMS UPN48_class_I_Rep_1 5 530.2672119140625 2 529.804977 1057.5954 NaN NaN NaN NaN NaN NaN NaN 32.367 1 35.893 35.393 36.393 3.5266 0 0 0 0.3967 1 4914 4914 1.4819 0.68827 1 34845 1786 22255 22266 39946 39946 0.0689066249658481 RELNEALEL 9 Unmodified _RELNEALEL_ 0 0 0 nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53 nc|ENSG00000141510|P04637-7|TP53 nc|ENSG00000141510|P04637-7|TP53 MULTI-MSMS UPN48_class_I_Rep_1 5 543.7942504882812 2 543.793121 1085.57169 0.41706 0.0002268 0.17686 9.6176E-05 0.59392 0.00032297 543.7931784325592 50.507 0.7139 54.032 53.713 54.427 3.5246 64 46 2 0 0 0 0.16799 2 10309 10267;10309 23.79 3.3752 1 220520 34846 3222 22256 22267 39947;39948 39948 0.032325202637593975 RELNEALEL 9 Unmodified _RELNEALEL_ 0 0 0 nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53 nc|ENSG00000141510|P04637-7|TP53 nc|ENSG00000141510|P04637-7|TP53 MULTI-MSMS UPN48_class_I_Rep_2 6 543.793212890625 2 543.793121 1085.57169 0.45108 0.0002453 0.083074 4.5175E-05 0.53416 0.00029047 543.7930969385004 50.271 0.43366 53.965 53.735 54.169 3.6946 51 28 2 0 0 0 0.26468 1 10264 10264 16.149 0 1 166630 34847 3222 22256 22267 39949 39949 0.032325202637593975 RELNEALEL 9 Unmodified _RELNEALEL_ 0 0 0 nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53 nc|ENSG00000141510|P04637-7|TP53 nc|ENSG00000141510|P04637-7|TP53 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 543.793121 1085.57169 0.45108 0.0002453 0.083074 4.5175E-05 0.53416 0.00029047 543.7930969385004 50.271 0.43366 53.965 53.735 54.169 3.6946 -0.021463 5.1892E-05 NaN 23.79 51 28 2 NaN NaN NaN NaN 0 NaN NaN 0 166630 34848 3222 22256 22267 0.032325202637593975 RELQTYKF 8 Unmodified _RELQTYKF_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|47|1|sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|47|1|sense MSMS UPN48_class_I_Rep_3 7 542.7930297851562 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 36.262 1 39.928 39.428 40.428 3.6667 0 0 0 0.40527 1 5981 5981 3.5965 1.019 1 + 34849 30695 22257 22268 39950 39950 0.03285145334552908 RELSPFHLK 9 Unmodified _RELSPFHLK_ 0 0 0 MER44C_dup440|chr7:158808137-158808707:+|1.6213487201488672|0.0302937927115934|5.74|151.0|33|3|anti-sense MER44C_dup440|chr7:158808137-158808707:+|1.6213487201488672|0.0302937927115934|5.74|151.0|33|3|anti-sense MER44C_dup440|chr7:158808137-158808707:+|1.6213487201488672|0.0302937927115934|5.74|151.0|33|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 563.8218383789062 2 563.822015 1125.62948 0.35307 0.00019907 -0.28955 -0.00016325 0.063519 3.5813E-05 563.82175124934 44.831 0.3957 48.468 48.295 48.691 3.6372 36 24 2 0 0 0 0.47763 1 8512 8512 2.9952 0 1 123740 34850 15986 22258 22269 39951 39951 0.07168826979818732 RELSSRLL 8 Unmodified _RELSSRLL_ 0 0 0 REV__ENST00000423260.1_1_6:16762458-16762656:+|nuORF REV__ENST00000423260.1_1_6:16762458-16762656:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 487.29315185546875 2 487.293091 972.571629 0.33181 0.00016169 -0.12119 -5.9056E-05 0.21062 0.00010263 487.29298502456237 82.25 0.50916 85.648 85.364 85.873 3.3984 87 63 2 0 0 0 0.82752 2 20470 20470;20499 2.8892 0 1 132350 + 34851 22251 22259 22270 39952;39953 39952 0.08424565054417599 REMDCSHLSPS 11 Unmodified _REMDCSHLSPS_ 0 0 0 MLT1J_dup9441|chr10:75505161-75505426:-|1.0815508181114488|0.0043356110971195|7.96|148.0|16|2|anti-sense MLT1J_dup9441|chr10:75505161-75505426:-|1.0815508181114488|0.0043356110971195|7.96|148.0|16|2|anti-sense MLT1J_dup9441|chr10:75505161-75505426:-|1.0815508181114488|0.0043356110971195|7.96|148.0|16|2|anti-sense MSMS UPN48_class_I_Rep_2 6 420.76446533203125 3 421.181512 1260.52271 NaN NaN NaN NaN NaN NaN NaN 75.239 1 78.829 78.329 79.329 3.59 0 0 0 0.38417 1 17736 17736 0.40827 0 1 34852 16465 22260 22271 39954 39954 -0.0971345935915906 RENDIKSYF 9 Unmodified _RENDIKSYF_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 586.2908325195312 2 586.290745 1170.56694 -0.031366 -1.839E-05 0.20139 0.00011807 0.17002 9.9682E-05 586.290770693245 38.922 0.96735 42.587 42.266 43.233 3.6652 168 64 3 0 0 0 0.029742 7 7603 7483;7522;7559;7603;7650;7695;7734 57.249 27.409 1 474550 34853 4376 22261 22272 39955;39956;39957;39958;39959;39960;39961 39958 -0.011523638790094992 RENDIKSYF 9 Unmodified _RENDIKSYF_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 586.29052734375 2 586.290745 1170.56694 -0.029053 -1.7034E-05 1.3065 0.00076599 1.2774 0.00074896 586.2910047852533 39.668 0.43803 43.335 43.235 43.673 3.6668 41 30 2 0 0 0 0.47763 1 7806 7806 2.9952 0.26005 1 81532 34854 4376 22261 22272 39962 39962 -0.011523638790094992 RENDIKSYF 9 Unmodified _RENDIKSYF_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 586.2904663085938 2 586.290745 1170.56694 0.045137 2.6464E-05 0.087747 5.1445E-05 0.13288 7.7909E-05 586.2907518331691 39.331 1.2253 42.71 42.359 43.585 3.3785 164 74 3 0 0 0 0.048729 8 7693 7645;7693;7737;7783;7829;7870;7896;7931 49.527 25.737 1 453100 34855 4376 22261 22272 39963;39964;39965;39966;39967;39968;39969;39970 39964 -0.011523638790094992 RENDIKSYF 9 Unmodified _RENDIKSYF_ 0 0 0 ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1 ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENST00000401028.2_1_1:91793937-91794252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 586.2909545898438 2 586.290745 1170.56694 -0.038175 -2.2382E-05 0.33903 0.00019877 0.30086 0.00017639 586.2908191972676 39.516 1.1488 42.754 42.388 43.537 3.238 181 76 3 0 0 0 0.073198 8 7842 7764;7801;7842;7881;7923;7961;7975;8010 40.239 19.825 1 395530 34856 4376 22261 22272 39971;39972;39973;39974;39975;39976;39977;39978 39973 -0.011523638790094992 RENNAVYAF 9 Unmodified _RENNAVYAF_ 0 0 0 ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF ENST00000481106.5_1_X:80458072-80552723:+|nuORF ENST00000481106.5_1_X:80458072-80552723:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 542.2644653320312 2 542.26453 1082.51451 0.0040614 2.2024E-06 -0.084695 -4.5927E-05 -0.080634 -4.3725E-05 542.2644170035309 39.861 1.1499 43.528 43.175 44.325 3.6668 191 84 3 0 0 0 0.15547 1 7804 7804 24.991 0.781 1 534420 34857 2702 22262 22273 39979 39979 -0.023449022219665494 RENPLELRL 9 Unmodified _RENPLELRL_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN47_class_I_Rep_1 2 570.3303833007812 2 570.330205 1138.64586 0.18576 0.00010594 -0.12179 -6.946E-05 0.06397 3.6484E-05 570.330071070016 48.673 1.089 52.355 51.953 53.042 3.6819 160 73 3 0 0 0 0.13455 2 10560 10457;10560 27.223 6.3417 1 229450 34858 2417 22263 22274 39980;39981 39981 0.08207908145936926 RENPLELRL 9 Unmodified _RENPLELRL_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN47_class_I_Rep_2 3 570.329833984375 2 570.330205 1138.64586 0.39743 0.00022667 -0.40859 -0.00023303 -0.011155 -6.3622E-06 570.3298904698739 49.061 1.4706 52.407 51.955 53.426 3.3465 142 92 2 0 0 0 0.15661 5 10645 10606;10645;10689;10732;10772 24.882 3.2914 1 184320 34859 2417 22263 22274 39982;39983;39984;39985;39986 39983 0.08207908145936926 RENPLELRL 9 Unmodified _RENPLELRL_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN47_class_I_Rep_3 4 570.3301391601562 2 570.330205 1138.64586 0.44574 0.00025422 -0.325 -0.00018535 0.12074 6.8863E-05 570.329974709936 49.359 0.98225 52.593 52.029 53.011 3.2345 105 59 2 0 0 0 0.279 2 10848 10706;10848 15.248 0 1 135240 34860 2417 22263 22274 39987;39988 39988 0.08207908145936926 RENPLELRL 9 Unmodified _RENPLELRL_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN48_class_I_Rep_1 5 570.3302001953125 2 570.330205 1138.64586 0.39423 0.00022484 0.17103 9.7542E-05 0.56526 0.00032238 570.3301923242188 49.182 0.46119 52.706 52.484 52.945 3.5239 57 35 2 0 0 0 0.279 1 9899 9899 15.248 2.206 1 155190 34861 2417 22263 22274 39989 39989 0.08207908145936926 RENPLELRL 9 Unmodified _RENPLELRL_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS UPN48_class_I_Rep_2 6 570.3306884765625 2 570.330205 1138.64586 0.41044 0.00023408 0.029537 1.6846E-05 0.43997 0.00025093 570.3301586135233 48.935 0.58862 52.652 52.405 52.994 3.7175 51 38 2 0 0 0 0.17857 2 9839 9789;9839 22.775 3.3016 1 101350 34862 2417 22263 22274 39990;39991 39991 0.08207908145936926 RENPLELRL 9 Unmodified _RENPLELRL_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MSMS UPN48_class_I_Rep_3 7 570.3303833007812 2 570.330205 1138.64586 NaN NaN NaN NaN NaN NaN NaN 49.06 1 52.689 52.189 53.189 3.6291 0 0 0 0.11743 1 9808 9808 21.59 3.2171 1 34863 2417 22263 22274 39992 39992 0.08207908145936926 RENTLLKTL 9 Unmodified _RENTLLKTL_ 0 0 0 nc|ENSG00000157514|Q99576-5|TSC22D3;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3 nc|ENSG00000157514|Q99576-5|TSC22D3 nc|ENSG00000157514|Q99576-5|TSC22D3 MULTI-MSMS UPN47_class_I_Rep_1 2 544.3270263671875 2 544.327131 1086.63971 0.0075956 4.1345E-06 -0.16333 -8.8906E-05 -0.15574 -8.4772E-05 544.3270168584769 37.613 1.2351 41.278 40.897 42.132 3.6652 202 91 3 0 0 0 0.079935 1 7199 7199 38.615 0 1 640680 34864 3766 22264 22275 39993 39993 0.09985389914436382 RENTLLKTL 9 Unmodified _RENTLLKTL_ 0 0 0 nc|ENSG00000157514|Q99576-5|TSC22D3;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3 nc|ENSG00000157514|Q99576-5|TSC22D3 nc|ENSG00000157514|Q99576-5|TSC22D3 MULTI-MSMS UPN47_class_I_Rep_2 3 544.326904296875 2 544.327131 1086.63971 0.012828 6.9828E-06 -0.16619 -9.046E-05 -0.15336 -8.3478E-05 544.3269849420462 38.038 1.0775 41.426 41.024 42.102 3.3879 224 87 3 0 0 0 0.10956 1 7326 7326 32.037 0 1 450800 34865 3766 22264 22275 39994 39994 0.09985389914436382 RENTYRRY 8 Unmodified _RENTYRRY_ 0 0 0 L1M4_dup8836|chr8:58628311-58629741:-|7.085695591198625|0.2101042057134339|5.08|151.0|19|1|sense L1M4_dup8836|chr8:58628311-58629741:-|7.085695591198625|0.2101042057134339|5.08|151.0|19|1|sense L1M4_dup8836|chr8:58628311-58629741:-|7.085695591198625|0.2101042057134339|5.08|151.0|19|1|sense MSMS UPN47_class_I_Rep_2 3 579.2930908203125 2 579.294153 1156.57375 NaN NaN NaN NaN NaN NaN NaN 47.08 1 50.432 49.932 50.932 3.3515 0 0 0 0.40625 1 10076 10076 2.3027 0 1 34866 8922 22265 22276 39995 39995 0.0017299379221640265 REPCCCHTCCC 11 Unmodified _REPCCCHTCCC_ 0 0 0 REV__ENSG00000204323|ENST00000375215|SMIM5 REV__ENSG00000204323|ENST00000375215|SMIM5 MSMS UPN48_class_I_Rep_2 6 629.191650390625 2 629.191641 1256.36873 NaN NaN NaN NaN NaN NaN NaN 118.09 1 121.75 121.25 122.25 3.6627 0 0 0 0.38417 1 28306 28306 0 0 1 + 34867 21188 22266 22277 39996 39996 -0.24919974983822613 REPRDISIA 9 Unmodified _REPRDISIA_ 0 0 0 REV__ENST00000535984.1_1_11:113285130-113295217:-|nuORF REV__ENST00000535984.1_1_11:113285130-113295217:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.7931518554688 2 528.793455 1055.57236 -0.23783 -0.00012576 0.29267 0.00015476 0.05484 2.8999E-05 528.7935218224331 31.201 0.61245 34.5 34.28 34.892 3.2991 84 50 2 0 0 0 0.42249 1 5299 5299 6.7232 0 1 98043 + 34868 22890 22267 22278 39997 39997 0.04679359703482078 REPWVLRK 8 Unmodified _REPWVLRK_ 0 0 0 L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|21|1|sense L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|21|1|sense L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|21|1|sense MSMS UPN47_class_I_Rep_1 2 542.5287475585938 2 542.324725 1082.6349 NaN NaN NaN NaN NaN NaN NaN 38.379 1 42.045 41.545 42.545 3.6652 0 0 0 0.40746 1 7389 7389 0.69038 0 1 34869 11549 22268 22279 39998 39998 0.09688550562327691 REQALAKQF 9 Unmodified _REQALAKQF_ 0 0 0 ENST00000517801.5_1_8:130863079-130874553:-|nuORF;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB ENST00000517801.5_1_8:130863079-130874553:-|nuORF ENST00000517801.5_1_8:130863079-130874553:-|nuORF MSMS UPN47_class_I_Rep_2 3 545.8041381835938 2 545.803823 1089.59309 NaN NaN NaN NaN NaN NaN NaN 25.98 1 29.475 28.975 29.975 3.4945 0 0 0 0.39036 1 3691 3691 2.9952 0 1 34870 3644 22269 22280 39999 39999 0.05187950083131909 REQLAIAEF 9 Unmodified _REQLAIAEF_ 0 0 0 ENST00000546204.1_1_6:160200657-160201127:-|nuORF;ENSG00000120438|ENST00000321394|TCP1 ENST00000546204.1_1_6:160200657-160201127:-|nuORF ENST00000546204.1_1_6:160200657-160201127:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 538.7902221679688 2 538.790381 1075.56621 0.34856 0.0001878 -0.49465 -0.00026651 -0.14609 -7.8711E-05 538.7902080033912 54.916 1.273 58.417 57.769 59.042 3.5014 108 74 2 0 0 0 0.15547 1 12288 12288 24.991 5.629 1 312930 34871 2324 22270 22281 40000 40000 0.03144841471930704 REQLAIAEF 9 Unmodified _REQLAIAEF_ 0 0 0 ENST00000546204.1_1_6:160200657-160201127:-|nuORF;ENSG00000120438|ENST00000321394|TCP1 ENST00000546204.1_1_6:160200657-160201127:-|nuORF ENST00000546204.1_1_6:160200657-160201127:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 538.790283203125 2 538.790381 1075.56621 0.46808 0.0002522 -1.6932 -0.00091226 -1.2251 -0.00066006 538.790083726859 55.198 1.4163 58.508 57.779 59.195 3.3102 142 78 4 0 0 0 0.20317 4 12405 12357;12405;12446;12458 20.415 3.3016 1 318790 34872 2324 22270 22281 40001;40002;40003;40004 40002 0.03144841471930704 REQLAIAEF 9 Unmodified _REQLAIAEF_ 0 0 0 ENST00000546204.1_1_6:160200657-160201127:-|nuORF;ENSG00000120438|ENST00000321394|TCP1 ENST00000546204.1_1_6:160200657-160201127:-|nuORF ENST00000546204.1_1_6:160200657-160201127:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 538.790283203125 2 538.790381 1075.56621 0.406 0.00021875 -0.7016 -0.00037801 -0.29559 -0.00015926 538.7900663930279 55.338 1.3768 58.515 57.797 59.174 3.1779 124 83 2 0 0 0 0.062142 3 12485 12485;12525;12534 43.772 11.467 1 316940 34873 2324 22270 22281 40005;40006;40007 40005 0.03144841471930704 REQLTKAK 8 Unmodified _REQLTKAK_ 0 0 0 REV__L1MC2_dup4606|chr12:101806590-101807648:+|2.0836500770846347|0.0362403313954187|5.85|150.0|10|2|sense REV__L1MC2_dup4606|chr12:101806590-101807648:+|2.0836500770846347|0.0362403313954187|5.85|150.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 487.26129150390625 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 86.12 1 86.12 85.62 86.62 0 0 0 0 0.40738 1 20580 20580 0.79363 0 1 + 34874 26672 22271 22282 40008 40008 0.0842456505440623 REQWWRWNRWP 11 Unmodified _REQWWRWNRWP_ 0 0 0 ENST00000510393.5_1_1:16083148-16084686:+|nuORF ENST00000510393.5_1_1:16083148-16084686:+|nuORF ENST00000510393.5_1_1:16083148-16084686:+|nuORF MSMS UPN47_class_I_Rep_2 3 567.2838134765625 3 567.28328 1698.82801 NaN NaN NaN NaN NaN NaN NaN 14.091 1 17.478 16.978 17.978 3.3871 0 0 0 0.38417 1 487 487 0 0 1 34875 7179 22272 22283 40009 40009 0.0065506061139330996 RERAITVKS 9 Unmodified _RERAITVKS_ 0 0 0 REV__ENSG00000138771|ENST00000296043|SHROOM3 REV__ENSG00000138771|ENST00000296043|SHROOM3 MSMS UPN46_class_I_Rep_3 1 530.3176879882812 2 530.317097 1058.61964 NaN NaN NaN NaN NaN NaN NaN 80.435 1 80.435 79.935 80.935 0 0 0 0 0.39518 1 18947 18947 1.8442 0 1 + 34876 19293 22273 22284 40010 40010 0.09267638974461079 RERAITVKS 9 Unmodified _RERAITVKS_ 0 0 0 REV__ENSG00000138771|ENST00000296043|SHROOM3 REV__ENSG00000138771|ENST00000296043|SHROOM3 MSMS UPN48_class_I_Rep_1 5 530.3167724609375 2 530.317097 1058.61964 NaN NaN NaN NaN NaN NaN NaN 76.989 1 80.499 79.999 80.999 3.5102 0 0 0 0.39518 1 18303 18303 1.8442 0 1 + 34877 19293 22273 22284 40011 40011 0.09267638974461079 RERIHEWD 8 Unmodified _RERIHEWD_ 0 0 0 REV__ENSG00000112079|ENST00000229812|STK38 REV__ENSG00000112079|ENST00000229812|STK38 MULTI-MSMS UPN47_class_I_Rep_2 3 570.7801513671875 2 570.780879 1139.5472 0.51696 0.00029507 1.6496 0.00094153 2.1665 0.0012366 570.7817237933034 53.854 0.67065 57.172 56.839 57.51 3.3187 59 42 2 0 0 0 0.82752 1 12166 12166 2.3027 0.4585 1 107850 + 34878 18474 22274 22285 40012 40012 -0.016986950990940386 RERKALPPR 9 Unmodified _RERKALPPR_ 0 0 0 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 MSMS UPN48_class_I_Rep_3 7 561.8457641601562 2 561.846356 1121.67816 NaN NaN NaN NaN NaN NaN NaN 87.949 1 91.759 91.259 92.259 3.8104 0 0 0 0.40038 1 20871 20871 0.6015 0 1 34879 4198 22275 22286 40013 40013 0.12218740339585565 RERKIKYSKLL 11 Unmodified _RERKIKYSKLL_ 0 0 0 ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L MSMS UPN48_class_I_Rep_2 6 478.6373291015625 3 478.636549 1432.88782 NaN NaN NaN NaN NaN NaN NaN 66.583 1 70.07 69.57 70.57 3.4866 0 0 0 0.38417 1 15223 15223 1.2148 0.80657 1 34880 5088 22276 22287 40014 40014 0.1886893850207798 RERKRRHVHLA 11 Unmodified _RERKRRHVHLA_ 0 0 0 REV__L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|23|1|sense REV__L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|23|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.6272888183594 3 486.62727 1456.85998 0.23372 0.00011374 0.13155 6.4014E-05 0.36527 0.00017775 486.6272456796425 99.913 0.56055 103.77 103.63 104.19 3.8537 126 79 2 0 0 0 0.68024 1 23665 23665 0.50596 0.50596 1 373760 + 34881 30150 22277 22288 40015 40015 0.14982473085206038 RERKRRHVHLA 11 Unmodified _RERKRRHVHLA_ 0 0 0 REV__L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|23|1|sense REV__L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|23|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 486.62727 1456.85998 0.25254 0.00012289 0.52259 0.00025431 0.77514 0.0003772 486.62746608468683 99.875 0.21494 103.63 103.47 103.69 3.7575 -0.067081 0.00047396 NaN 0.50596 48 27 2 NaN NaN NaN NaN 0 NaN NaN 0 213560 + 34882 30150 22277 22288 0.14982473085206038 RERKRRHVHLA 11 Unmodified _RERKRRHVHLA_ 0 0 0 REV__L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|23|1|sense REV__L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|23|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 486.62727 1456.85998 0.23372 0.00011374 0.13155 6.4014E-05 0.36527 0.00017775 486.6272456796425 99.913 0.56055 103.77 103.63 104.19 3.8537 0.067081 -9.6924E-05 NaN 0.50596 126 79 2 NaN NaN NaN NaN 0 NaN NaN 0 373760 + 34883 30150 22277 22288 0.14982473085206038 RERKVRIHYP 10 Unmodified _RERKVRIHYP_ 0 0 0 REV__L1MC3_dup5795|chr7:131033540-131034113:+|1.4009289255155326|0.0833491826135632|4.07|151.0|32|1|anti-sense REV__L1MC3_dup5795|chr7:131033540-131034113:+|1.4009289255155326|0.0833491826135632|4.07|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_1 2 451.93206787109375 3 451.933588 1352.77894 NaN NaN NaN NaN NaN NaN NaN 103.29 1 107.07 106.57 107.57 3.7788 0 0 0 0.53105 1 25399 25399 0.77653 0.078866 1 + 34884 26765 22278 22289 40016 40016 0.11665772322453449 RERLALAGPQL 11 Unmodified _RERLALAGPQL_ 0 0 0 nc|ENSG00000142599|Q9P2R6-2|RERE;ENSG00000142599|ENST00000400908|RERE nc|ENSG00000142599|Q9P2R6-2|RERE nc|ENSG00000142599|Q9P2R6-2|RERE MSMS UPN48_class_I_Rep_1 5 408.57733154296875 3 408.578811 1222.7146 NaN NaN NaN NaN NaN NaN NaN 74.822 1 78.312 77.812 78.812 3.49 0 0 0 0.38417 1 17697 17697 1.0136 0.051299 1 34885 3254 22279 22290 40017 40017 0.11215572445667021 RERLLLRP 8 Unmodified _RERLLLRP_ 0 0 0 ENSG00000116183|ENST00000367662|PAPPA2;nc|ENSG00000116183|Q9BXP8-2|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 ENSG00000116183|ENST00000367662|PAPPA2 MSMS UPN47_class_I_Rep_1 2 526.8387451171875 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 102.99 1 106.76 106.26 107.26 3.7788 0 0 0 0.40746 1 25335 25335 0.69038 0 1 34886 2168 22280 22291 40018 40018 0.13768239453679598 RERMEKGIP 9 Unmodified _RERMEKGIP_ 0 0 0 L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|34|3|sense L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|34|3|sense L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 558.3004760742188 2 558.303133 1114.59171 NaN NaN NaN NaN NaN NaN NaN 36.2 1 39.454 38.954 39.954 3.2547 0 0 0 0.38784 1 6797 6797 3.5965 0.60125 1 34887 9039 22281 22292 40019 40019 0.038999927227450826 RERRKIWDELY 11 Unmodified _RERRKIWDELY_ 0 0 0 HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 522.1361694335938 3 521.951196 1562.83176 0.40959 0.00021378 -0.38631 -0.00020164 0.023274 1.2148E-05 521.9508076608256 52.437 0.65436 56.076 55.705 56.36 3.639 95 57 2 0 0 0 22.551 1 10849 10849 4.1166 1.4854 1 232840 34888 8150 22282 22293 40020 40020 0.0728568559463838 RERRKIWDELY 11 Unmodified _RERRKIWDELY_ 0 0 0 HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 521.951196 1562.83176 0.29933 0.00015624 -0.32256 -0.00016836 -0.023223 -1.2121E-05 521.950859255561 52.428 0.82701 55.951 55.703 56.53 3.5227 -0.035448 -3.0843E-06 NaN 4.1166 149 73 3 NaN NaN NaN NaN 0 NaN NaN 0 279260 34889 8150 22282 22293 0.0728568559463838 RERRKIWDELY 11 Unmodified _RERRKIWDELY_ 0 0 0 HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense HERVH-int_dup413|chr1:231832540-231835234:-|3.4714899939372907|0.1198912946433245|4.86|151.0|100|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 521.951196 1562.83176 0.27374 0.00014288 -0.2374 -0.00012391 0.03634 1.8968E-05 521.9509246968352 52.334 0.38471 55.932 55.744 56.129 3.5979 -0.053983 0.00013025 NaN 4.1166 61 39 2 NaN NaN NaN NaN 0 NaN NaN 0 349660 34890 8150 22282 22293 0.0728568559463838 RERRRRRNLF 10 Unmodified _RERRRRRNLF_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MULTI-MSMS UPN48_class_I_Rep_1 5 486.9588928222656 3 486.95902 1457.85523 0.14033 6.8336E-05 -0.069181 -3.3689E-05 0.071151 3.4648E-05 486.9588897578522 106.18 0.47145 109.8 109.57 110.04 3.6277 106 63 2 0 0 0 0.56337 1 25588 25588 1.4551 0.34536 1 274210 + 34891 19637 22283 22294 40021 40021 0.14461588942458548 RERRRRRNLF 10 Unmodified _RERRRRRNLF_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MULTI-MATCH UPN47_class_I_Rep_3 4 3 486.95902 1457.85523 0.21908 0.00010668 0.074085 3.6076E-05 0.29316 0.00014276 486.9589788360494 106.5 0.04599 110.04 110.02 110.07 3.5367 0.17311 0.00040219 NaN 1.4551 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 73186 + 34892 19637 22283 22294 0.14461588942458548 RERRRRRNLF 10 Unmodified _RERRRRRNLF_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 486.95902 1457.85523 0.14033 6.8336E-05 -0.069181 -3.3689E-05 0.071151 3.4648E-05 486.9588897578522 106.18 0.47145 109.8 109.57 110.04 3.6277 -0.064083 0.00019289 NaN 1.4551 106 63 2 NaN NaN NaN NaN 0 NaN NaN 0 274210 + 34893 19637 22283 22294 0.14461588942458548 RERRRRRNLF 10 Unmodified _RERRRRRNLF_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 486.95902 1457.85523 0.23435 0.00011412 -0.43463 -0.00021165 -0.20028 -9.7529E-05 486.95877257770843 106.06 0.45557 109.76 109.56 110.02 3.702 -0.10903 -0.00034098 NaN 1.4551 92 66 2 NaN NaN NaN NaN 0 NaN NaN 0 217990 + 34894 19637 22283 22294 0.14461588942458548 RERTYWKWWLC 11 Unmodified _RERTYWKWWLC_ 0 0 0 REV__LOR1-int_dup1002|chr13:47960815-47962686:+|1.5480409076142732|0.1189646327098816|3.7|151.0|21|1|sense REV__LOR1-int_dup1002|chr13:47960815-47962686:+|1.5480409076142732|0.1189646327098816|3.7|151.0|21|1|sense MSMS UPN48_class_I_Rep_2 6 542.9373168945312 3 542.938122 1625.79254 NaN NaN NaN NaN NaN NaN NaN 81.013 1 84.67 84.17 85.17 3.6567 0 0 0 0.38417 1 19222 19222 0.094841 0.094841 1 + 34895 30765 22284 22295 40022 40022 0.004672620393876059 RERVTLTKL 9 Unmodified _RERVTLTKL_ 0 0 0 REV__L1ME3_dup9146|chr22:45813892-45814656:+|1.297017167083402|0.0212966439251912|5.93|150.0|14|2|sense REV__L1ME3_dup9146|chr22:45813892-45814656:+|1.297017167083402|0.0212966439251912|5.93|150.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 558.3489990234375 2 558.348397 1114.68224 NaN NaN NaN NaN NaN NaN NaN 101.46 1 101.46 100.96 101.96 0 0 0 0 0.39518 1 24754 24754 1.8442 0.36234 1 + 34896 27976 22285 22296 40023 40023 0.12948785042658528 RERVTLTKL 9 Unmodified _RERVTLTKL_ 0 0 0 REV__L1ME3_dup9146|chr22:45813892-45814656:+|1.297017167083402|0.0212966439251912|5.93|150.0|14|2|sense REV__L1ME3_dup9146|chr22:45813892-45814656:+|1.297017167083402|0.0212966439251912|5.93|150.0|14|2|sense MSMS UPN47_class_I_Rep_2 3 558.3488159179688 2 558.348397 1114.68224 NaN NaN NaN NaN NaN NaN NaN 96.888 1 100.37 99.867 100.87 3.4791 0 0 0 0.39518 1 23796 23796 1.8442 1.2427 1 + 34897 27976 22285 22296 40024 40024 0.12948785042658528 RERVTLTKL 9 Unmodified _RERVTLTKL_ 0 0 0 REV__L1ME3_dup9146|chr22:45813892-45814656:+|1.297017167083402|0.0212966439251912|5.93|150.0|14|2|sense REV__L1ME3_dup9146|chr22:45813892-45814656:+|1.297017167083402|0.0212966439251912|5.93|150.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 558.3488159179688 2 558.348397 1114.68224 NaN NaN NaN NaN NaN NaN NaN 97.07 1 100.48 99.984 100.98 3.414 0 0 0 0.39518 1 24068 24068 1.8442 0 1 + 34898 27976 22285 22296 40025 40025 0.12948785042658528 RERYRNYR 8 Unmodified _RERYRNYR_ 0 0 0 REV__ENSG00000129347|ENST00000312962|KRI1 REV__ENSG00000129347|ENST00000312962|KRI1 MSMS UPN48_class_I_Rep_3 7 404.96832275390625 3 404.883005 1211.62719 NaN NaN NaN NaN NaN NaN NaN 30.331 1 34.045 33.545 34.545 3.7146 0 0 0 0.40764 1 4360 4360 0.45834 0.18932 1 + 34899 18921 22286 22297 40026 40026 0.029837912947414225 RESCEIYAGLR 11 Unmodified _RESCEIYAGLR_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|29|1|sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|29|1|sense MSMS UPN46_class_I_Rep_3 1 432.8852844238281 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 66.764 1 66.764 66.264 67.264 0 0 0 0 0.38417 1 15166 15166 0.40827 0 1 + 34900 29070 22287 22298 40027 40027 -0.006769608023432738 RESETKKGF 9 Unmodified _RESETKKGF_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN47_class_I_Rep_1 2 541.2850341796875 2 541.285463 1080.55637 -0.10128 -5.4823E-05 -0.091411 -4.9479E-05 -0.19269 -0.0001043 541.285253971375 13.082 0.1805 16.539 16.445 16.625 3.457 21 15 2 0 0 0 0.26468 1 237 237 16.149 7.4037 1 57400 34901 3716 22288 22299 40028 40028 0.019316534665676954 RESETKKGF 9 Unmodified _RESETKKGF_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN47_class_I_Rep_2 3 541.2845458984375 2 541.285463 1080.55637 0.0063909 3.4593E-06 -0.59232 -0.00032061 -0.58593 -0.00031716 541.2850141888366 13.122 0.18009 16.51 16.419 16.599 3.388 23 15 2 0 0 0 0.47493 1 242 242 3.2813 0.70383 1 44339 34902 3716 22288 22299 40029 40029 0.019316534665676954 RESKTKITV 9 Unmodified _RESKTKITV_ 0 0 0 Charlie2b_dup1877|chr8:65830272-65831182:+|1.1888607551595962|0.0603556390925507|4.3|151.0|37|3|sense Charlie2b_dup1877|chr8:65830272-65831182:+|1.1888607551595962|0.0603556390925507|4.3|151.0|37|3|sense Charlie2b_dup1877|chr8:65830272-65831182:+|1.1888607551595962|0.0603556390925507|4.3|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 531.319091796875 2 531.319306 1060.62406 0.33682 0.00017896 -0.25832 -0.00013725 0.0785 4.1708E-05 531.318923570542 85.922 0.68734 89.528 89.257 89.945 3.6059 141 75 3 0 0 0 0.50015 1 20665 20665 0.6015 0 1 220990 34903 512 22289 22300 40030 40030 0.09617103397340543 RESSEPDQTQ 10 Unmodified _RESSEPDQTQ_ 0 0 0 REV__L1M1_dup210|chr1:93250412-93251994:-|2.408170501080328|0.1297569635876913|4.21|151.0|23|2|sense REV__L1M1_dup210|chr1:93250412-93251994:-|2.408170501080328|0.1297569635876913|4.21|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.761474609375 2 588.760006 1175.50546 0.04605 2.7112E-05 0.63395 0.00037324 0.68 0.00040036 588.7603936820675 41.609 0.43869 44.846 44.664 45.103 3.2372 58 38 2 0 0 0 0.56118 1 8457 8457 2.9952 0.41776 1 97104 + 34904 24031 22290 22301 40031 40031 -0.07527340368937985 RESTTGKRKSP 11 Unmodified _RESTTGKRKSP_ 0 0 0 L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|135|3|sense L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|135|3|sense L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|135|3|sense MSMS UPN47_class_I_Rep_3 4 416.2352600097656 3 416.233592 1245.67895 NaN NaN NaN NaN NaN NaN NaN 104.93 1 108.46 107.96 108.96 3.5308 0 0 0 0.37931 1 25708 25708 3.5927 0.27303 1 34905 15132 22291 22302 40032 40032 0.06593490197997198 RESWLAILL 9 Unmodified _RESWLAILL_ 0 0 0 REV__L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|218|1|anti-sense REV__L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|218|1|anti-sense MSMS UPN47_class_I_Rep_2 3 550.8243408203125 2 550.826766 1099.63898 NaN NaN NaN NaN NaN NaN NaN 30.215 1 33.697 33.197 34.197 3.4821 0 0 0 0.37476 1 4949 4949 6.7232 0 1 + 34906 29823 22292 22303 40033 40033 0.09314595265368553 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 457.2640075683594 2 457.264333 912.514114 0.17738 8.1107E-05 0.1403 6.4156E-05 0.31768 0.00014526 457.26418404281094 76.332 1.2487 76.332 75.776 77.025 0 199 124 3 0 0 0 0.82752 1 17825 17825 2.3027 2.3027 1 304550 34907 6998 22293 22304 40034 40034 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MSMS UPN46_class_I_Rep_3 1 457.2645263671875 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 77.805 1 77.805 77.305 78.305 0 0 0 0 0.40738 1 18200 18200 0.79363 0 1 34908 6998 22293 22304 40035 40035 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 457.2643127441406 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.82752 2 17979 17979;18016 2.3027 2.3027 1 270870 34909 6998 22293 22304 40036;40037 40036 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 457.2640686035156 2 457.264333 912.514114 -0.15975 -7.3049E-05 0.25375 0.00011603 0.094003 4.2984E-05 457.2643104770797 71.157 1.19 74.375 73.403 74.593 3.2185 171 105 2 0 0 0 0.82752 1 17361 17361 0.79363 0.79363 1 160500 34910 6998 22293 22304 40038 40038 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MSMS UPN48_class_I_Rep_1 5 457.2644348144531 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 74.254 1 77.744 77.244 78.244 3.49 0 0 0 0.40738 1 17543 17543 0.79363 0.10326 1 34911 6998 22293 22304 40039 40039 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 457.2644348144531 2 457.264333 912.514114 0.16319 7.4623E-05 0.010421 4.765E-06 0.17361 7.9388E-05 457.2641985747419 72.45 1.6171 76.015 75.426 77.043 3.5645 245 162 2 0 0 0 0.82752 1 16945 16945 0.79363 0 1 245260 34912 6998 22293 22304 40040 40040 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 457.2646484375 2 457.264333 912.514114 0.23711 0.00010842 -0.086391 -3.9504E-05 0.15072 6.8918E-05 457.2641354090538 70.472 0.70474 73.99 73.471 74.176 3.5185 106 63 2 0 0 0 0.82752 1 16258 16258 0.79363 0.79363 1 164090 34913 6998 22293 22304 40041 40041 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MSMS UPN48_class_I_Rep_3 7 457.2644958496094 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 73.351 1 76.888 76.388 77.388 3.5373 0 0 0 0.40625 1 17157 17157 2.3027 0 1 34914 6998 22293 22304 40042 40042 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 457.264333 912.514114 0.1706 7.8011E-05 -0.42511 -0.00019439 -0.2545 -0.00011638 457.26407094018737 74.39 0.15105 74.39 74.347 74.498 0 0.15087 -0.00047679 NaN 0.79363 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 39032 34915 6998 22293 22304 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 457.264333 912.514114 -0.10907 -4.9874E-05 0.091482 4.1832E-05 -0.017587 -8.042E-06 457.264283988864 70.889 1.3215 74.172 73.553 74.875 3.2828 -0.066829 -4.3578E-06 NaN 0.79363 155 123 2 NaN NaN NaN NaN 0 NaN NaN 0 101490 34916 6998 22293 22304 0.054357228488470355 RETRAAPL 8 Unmodified _RETRAAPL_ 0 0 0 ENST00000606557.1_1_20:17948856-17948946:-|nuORF;ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF ENST00000606557.1_1_20:17948856-17948946:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 457.264333 912.514114 0.077766 3.5559E-05 0.09035 4.1314E-05 0.16812 7.6873E-05 457.26434027924523 70.808 0.15974 74.268 74.165 74.325 3.4598 0.028606 -5.3934E-06 NaN 0.79363 31 18 3 NaN NaN NaN NaN 0 NaN NaN 0 135820 34917 6998 22293 22304 0.054357228488470355 RETREPGLR 9 Unmodified _RETREPGLR_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 557.309814453125 2 557.309803 1112.60505 0.020261 1.1292E-05 -0.18668 -0.00010404 -0.16642 -9.2745E-05 557.3097191058282 23.425 0.80468 23.425 23.028 23.832 0 152 76 3 0 0 0 0.50088 1 2858 2858 0.52476 0 1 97718 + 34918 23935 22294 22305 40043 40043 0.05325566826309114 RETRVNKFK 9 Unmodified _RETRVNKFK_ 0 0 0 L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|26|1|sense L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|26|1|sense L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|26|1|sense MSMS UPN47_class_I_Rep_3 4 589.3441772460938 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 84.727 1 88.088 87.588 88.588 3.3615 0 0 0 0.39518 1 21266 21266 1.8442 0 1 34919 14797 22295 22306 40044 40044 0.09147016757128767 RETSAKVNW 9 Unmodified _RETSAKVNW_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31978569-31980175:-|nuORF;nc|ENSG00000248290|Q16473|TNXA;nc|ENSG00000168477|P22105-2|TNXB nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MULTI-SECPEP UPN48_class_I_Rep_3 7 545.3063354492188 2 545.78563 1089.55671 0.39561 0.00021592 0.93646 0.00051111 1.3321 0.00072702 546.2882120811656 46.859 0.080246 50.495 50.464 50.545 3.6363 6 5 2 0 0 0 0.12408 1 9130 9130 2.9952 0.69251 1 73213 34920 4373 22296 22307 40045 40045 0.01551073186396934 REVEGHTQW 9 Unmodified _REVEGHTQW_ 0 0 0 REV__ENST00000493886.5_1_9:35057116-35062147:-|nuORF REV__ENST00000493886.5_1_9:35057116-35062147:-|nuORF MSMS UPN48_class_I_Rep_1 5 570.8084106445312 2 571.272887 1140.53122 NaN NaN NaN NaN NaN NaN NaN 37.208 1 40.715 40.215 41.215 3.507 0 0 0 0.39518 1 6301 6301 1.8442 0 1 + 34921 22647 22297 22308 40046 40046 -0.03342401335999057 REVGRPAK 8 Unmodified _REVGRPAK_ 0 0 0 REV__ENSG00000099381|ENST00000262519|SETD1A REV__ENSG00000099381|ENST00000262519|SETD1A MULTI-MSMS UPN47_class_I_Rep_1 2 456.77081298828125 2 456.772326 911.530098 -0.41815 -0.000191 -0.15828 -7.2298E-05 -0.57643 -0.0002633 456.7723082881146 17.374 0.52553 20.924 20.6 21.125 3.5504 88 62 2 0 0 0 0.82752 1 1285 1285 2.3027 0 1 47977 + 34922 18069 22298 22309 40047 40047 0.07079429085740685 REVPQRNVKI 10 Unmodified _REVPQRNVKI_ 0 0 0 REV__L1PA7_dup10889|chr13:49118182-49124497:+|3.4931403871497397|0.0668209825516698|5.71|151.0|108|2|sense REV__L1PA7_dup10889|chr13:49118182-49124497:+|3.4931403871497397|0.0668209825516698|5.71|151.0|108|2|sense MSMS UPN47_class_I_Rep_3 4 619.86865234375 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 86.546 1 89.927 89.427 90.427 3.3801 0 0 0 0.53105 1 21692 21692 1.4819 0 1 + 34923 29988 22299 22310 40048 40048 0.11614974819940471 REVRHLRL 8 Unmodified _REVRHLRL_ 0 0 0 REV__Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|56|1|anti-sense REV__Tigger1_dup4428|chr5:131780495-131781875:+|2.377389820653749|0.0509325610894423|5.54|151.0|56|1|anti-sense MSMS UPN46_class_I_Rep_3 1 539.8323364257812 2 539.833249 1077.65194 NaN NaN NaN NaN NaN NaN NaN 89.541 1 89.541 89.041 90.041 0 0 0 0 0.40738 1 21544 21544 0.79363 0 1 + 34924 32445 22300 22311 40049 40049 0.1162247116810704 REVVETPLL 9 Unmodified _REVVETPLL_ 0 0 0 ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 MULTI-SECPEP UPN48_class_I_Rep_2 6 528.17431640625 2 528.308406 1054.60226 0.44675 0.00023602 -0.58977 -0.00031158 -0.14302 -7.5557E-05 528.3081151001961 52.434 0.50606 56.073 55.869 56.376 3.639 47 39 2 0 0 0 0.11734 1 10867 10867 11.495 2.7493 1 108130 34925 3897 22301 22312 40050 40050 0.07714298648807016 REVVETPLL 9 Unmodified _REVVETPLL_ 0 0 0 ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 528.308406 1054.60226 0.32992 0.0001743 -0.22113 -0.00011683 0.10878 5.7471E-05 528.3082124731561 52.661 0.5238 56.18 55.882 56.406 3.5192 0.062112 0.00013528 NaN 11.495 54 44 2 NaN NaN NaN NaN 0 NaN NaN 0 139150 34926 3897 22301 22312 0.07714298648807016 REVVETPLL 9 Unmodified _REVVETPLL_ 0 0 0 ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 528.308406 1054.60226 0.33793 0.00017853 -0.31332 -0.00016553 0.024608 1.3001E-05 528.3081642978555 52.504 0.51817 56.102 55.875 56.393 3.5979 -0.01661 3.7875E-05 NaN 11.495 64 43 2 NaN NaN NaN NaN 0 NaN NaN 0 128200 34927 3897 22301 22312 0.07714298648807016 REWDDHNDS 9 Unmodified _REWDDHNDS_ 0 0 0 MLT1L_dup10252|chr17:401302-401583:-|4.514575167016708|0.0485208423211231|6.54|151.0|11|1|anti-sense MLT1L_dup10252|chr17:401302-401583:-|4.514575167016708|0.0485208423211231|6.54|151.0|11|1|anti-sense MLT1L_dup10252|chr17:401302-401583:-|4.514575167016708|0.0485208423211231|6.54|151.0|11|1|anti-sense MSMS UPN47_class_I_Rep_2 3 587.2278442382812 2 587.231416 1172.44828 NaN NaN NaN NaN NaN NaN NaN 112.31 1 115.83 115.33 116.33 3.5186 0 0 0 0.38784 1 27347 27347 3.5965 1.9439 1 34928 16484 22302 22313 40051 40051 -0.13104762854663932 REWEEEEKE 9 Unmodified _REWEEEEKE_ 0 0 0 ENSG00000175766|ENST00000318682|EIF4E1B ENSG00000175766|ENST00000318682|EIF4E1B ENSG00000175766|ENST00000318682|EIF4E1B MSMS UPN47_class_I_Rep_1 2 421.84564208984375 3 421.854447 1262.54151 NaN NaN NaN NaN NaN NaN NaN 15.204 1 18.701 18.201 19.201 3.4968 0 0 0 0.40098 1 759 759 0.20686 0 1 34929 4736 22303 22314 40052 40052 -0.07925883192092442 REWFCVNER 9 Unmodified _REWFCVNER_ 0 0 0 REV__L1MA3_dup7712|chr15:44706100-44708322:-|2.7506624075351733|0.0615266263122844|5.48|150.0|56|3|sense REV__L1MA3_dup7712|chr15:44706100-44708322:-|2.7506624075351733|0.0615266263122844|5.48|150.0|56|3|sense MSMS UPN47_class_I_Rep_2 3 619.7880859375 2 619.790389 1237.56623 NaN NaN NaN NaN NaN NaN NaN 51.525 1 54.864 54.364 55.364 3.3386 0 0 0 0.39518 1 11421 11421 1.8442 0 1 + 34930 25109 22304 22315 40053 40053 -0.04305481799701738 REWFCVNER 9 Unmodified _REWFCVNER_ 0 0 0 REV__L1MA3_dup7712|chr15:44706100-44708322:-|2.7506624075351733|0.0615266263122844|5.48|150.0|56|3|sense REV__L1MA3_dup7712|chr15:44706100-44708322:-|2.7506624075351733|0.0615266263122844|5.48|150.0|56|3|sense MSMS UPN47_class_I_Rep_2 3 619.7903442382812 2 619.790389 1237.56623 NaN NaN NaN NaN NaN NaN NaN 64.079 1 67.335 66.835 67.835 3.2556 0 0 0 0.39518 1 15241 15241 1.8442 0 1 + 34931 25109 22304 22315 40054 40054 -0.04305481799701738 REYLIHSNQ 9 Unmodified _REYLIHSNQ_ 0 0 0 Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|306|3|anti-sense Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|306|3|anti-sense Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|306|3|anti-sense MSMS UPN47_class_I_Rep_3 4 580.2676391601562 2 580.296362 1158.57817 NaN NaN NaN NaN NaN NaN NaN 42.263 1 45.502 45.002 46.002 3.2394 0 0 0 0.3967 1 8656 8656 1.4819 0.28856 1 34932 7968 22305 22316 40055 40055 0.005224582151640789 REYQDLLNV 9 Unmodified _REYQDLLNV_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 575.7840576171875 2 575.29857 1148.58259 0.43482 0.00025015 -0.12008 -6.9081E-05 0.31474 0.00018107 575.2984470568115 53.955 0.83094 57.47 57.094 57.925 3.5143 128 58 3 0 0 0 0.095207 4 11370 11329;11370;11381;11411 34.932 12.196 1 526770 34933 824;4707;1697 22306 22317 40056;40057;40058;40059 40057 0.014239226380595937 REYQDLLNV 9 Unmodified _REYQDLLNV_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_2 6 575.298583984375 2 575.29857 1148.58259 0.56221 0.00032344 -0.44467 -0.00025582 0.11754 6.7619E-05 575.2982943129105 53.866 0.72105 57.447 57.104 57.825 3.5817 115 49 3 0 0 0 0.16799 5 11318 11279;11318;11332;11371;11415 23.79 6.6769 1 370910 34934 824;4707;1697 22306 22317 40060;40061;40062;40063;40064 40061 0.014239226380595937 REYQDLLNV 9 Unmodified _REYQDLLNV_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_3 7 575.2986450195312 2 575.29857 1148.58259 0.32633 0.00018774 -0.084298 -4.8497E-05 0.24204 0.00013924 575.2985561280165 53.879 0.8069 57.462 57.107 57.913 3.5836 122 55 3 0 0 0 0.16799 5 11225 11225;11262;11276;11315;11354 23.79 6.6769 1 346140 34935 824;4707;1697 22306 22317 40065;40066;40067;40068;40069 40065 0.014239226380595937 RFAIHAYQL 9 Unmodified _RFAIHAYQL_ 0 0 0 REV__L1MEf_dup5061|chr7:65933101-65934114:-|1.0552143977510946|0.0094565297034992|6.8|151.0|75|3|anti-sense REV__L1MEf_dup5061|chr7:65933101-65934114:-|1.0552143977510946|0.0094565297034992|6.8|151.0|75|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.81298828125 2 559.808908 1117.60326 NaN NaN NaN NaN NaN NaN NaN 64.292 1 67.466 66.966 67.966 3.1741 0 0 0 0.39518 1 15366 15366 1.8442 0 1 + 34936 28655 22307 22318 40070 40070 0.04916557808383004 RFAKFKWI 8 Unmodified _RFAKFKWI_ 0 0 0 REV__L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|9|1|sense REV__L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 548.3275756835938 2 548.326737 1094.63892 NaN NaN NaN NaN NaN NaN NaN 111.58 1 115.15 114.65 115.65 3.572 0 0 0 0.40746 1 27529 27529 0.69038 0.088878 1 + 34937 26133 22308 22319 40071 40071 0.0953864005603009 RFAKKNKP 8 Unmodified _RFAKKNKP_ 0 0 0 REV__ENSG00000198429.10,ZNF69,chr19,+,I1.1,11887987,11903572|30|9.86|4|intron REV__ENSG00000198429.10,ZNF69,chr19,+,I1.1,11887987,11903572|30|9.86|4|intron MSMS UPN46_class_I_Rep_3 1 494.8051452636719 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 17.254 1 17.254 16.754 17.754 0 0 0 0 0.40746 1 1331 1331 0.69038 0 1 + 34938 21053 22309 22320 40072 40072 0.10348879016555657 RFAKRAEL 8 Unmodified _RFAKRAEL_ 0 0 0 REV__ENSG00000122965|ENST00000261741|RBM19 REV__ENSG00000122965|ENST00000261741|RBM19 MSMS UPN47_class_I_Rep_1 2 495.7964782714844 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 74.748 1 78.141 77.641 78.641 3.3937 0 0 0 0.40404 1 18414 18414 5.2307 0.90143 1 + 34939 18767 22310 22321 40073 40073 0.08184288636891779 RFAKRVKYG 9 Unmodified _RFAKRVKYG_ 0 0 0 REV__nc|ENSG00000119509|Q9Y283-2|INVS REV__nc|ENSG00000119509|Q9Y283-2|INVS MSMS UPN48_class_I_Rep_3 7 562.8367309570312 2 562.838 1123.66145 NaN NaN NaN NaN NaN NaN NaN 109.5 1 113.17 112.67 113.67 3.67 0 0 0 0.38639 1 26004 26004 3.9444 0 1 + 34940 18675 22311 22322 40074 40074 0.10456239453651506 RFAKRVLY 8 Unmodified _RFAKRVLY_ 0 0 0 REV__nc|ENSG00000137474|Q13402-5|MYO7A REV__nc|ENSG00000137474|Q13402-5|MYO7A MULTI-MSMS UPN48_class_I_Rep_2 6 526.8223876953125 2 526.821818 1051.62908 0.40316 0.00021239 0.14208 7.485E-05 0.54524 0.00028724 526.8218044873515 108.77 0.51545 112.44 112.29 112.8 3.6746 214 55 4 0 0 0 0.82752 2 25811 25811;25865 13.508 1.8676 1 166180000 + 34941 19231 22312 22323 40075;40076 40075 0.10533452050663072 RFDDKIYK 8 Unmodified _RFDDKIYK_ 0 0 0 REV__ENST00000581302.5_1_18:21033283-21057068:+|nuORF REV__ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 542.7923583984375 2 542.792924 1083.57129 0.40177 0.00021808 -0.46832 -0.0002542 -0.06655 -3.6123E-05 542.7927388810426 97.922 0.029762 101.53 101.51 101.54 3.6065 5 3 2 0 0 0 0.82752 1 23619 23619 0.69038 0 1 42897 + 34942 18174 22313 22324 40077 40077 0.032851453345756454 RFDRHKRT 8 Unmodified _RFDRHKRT_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-2|BLTP1 REV__nc|ENSG00000138688|Q2LD37-2|BLTP1 MSMS UPN46_class_I_Rep_3 1 558.3124389648438 2 558.312681 1114.61081 NaN NaN NaN NaN NaN NaN NaN 100.89 1 100.89 100.39 101.39 0 0 0 0 0.40625 1 24606 24606 2.3027 0 1 + 34943 19284 22314 22325 40078 40078 0.05808710128644634 RFEAPLHLGT 10 Unmodified _RFEAPLHLGT_ 0 0 0 REV__L1PA14_dup341|chr2:112221556-112222452:-|1.3453796085026568|0.3457606022070092|1.96|151.0|51|2|anti-sense REV__L1PA14_dup341|chr2:112221556-112222452:-|1.3453796085026568|0.3457606022070092|1.96|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8118896484375 2 570.811648 1139.60874 0.41508 0.00023693 -0.036813 -2.1013E-05 0.37826 0.00021592 570.8115362692107 42.903 0.69392 46.661 46.276 46.97 3.7579 115 57 3 0 0 0 0.56118 1 8058 8058 2.9952 0 1 312340 + 34944 29166 22315 22326 40079 40079 0.0445223660017291 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 592.2804565429688 2 592.28018 1182.54581 0.40961 0.0002426 0.31381 0.00018587 0.72342 0.00042847 592.2802831571522 49.473 1.4209 52.998 52.583 54.004 3.5246 229 95 4 0 0 0 0.0058741 3 9992 9951;9992;10032 90.135 90.135 1 986780 34945 2721 22316 22327 40080;40081;40082 40081 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 592.2804565429688 2 592.28018 1182.54581 0.41994 0.00024872 0.25562 0.0001514 0.67556 0.00040012 592.2802694420119 49.209 1.1182 52.926 52.531 53.649 3.7175 207 71 4 0 0 0 0.006303 3 9928 9888;9928;9967 103.82 74.2 1 1060100 34946 2721 22316 22327 40083;40084;40085 40084 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 592.2805786132812 2 592.28018 1182.54581 0.41832 0.00024776 0.29932 0.00017728 0.71764 0.00042504 592.2803283396253 49.405 1.1037 53.034 52.66 53.764 3.6291 217 73 4 0 0 0 0.0060665 3 9871 9871;9910;9952 90.135 83.429 1 1028600 34947 2721 22316 22327 40086;40087;40088 40086 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENST00000369299.7_1_1:145575401-145580415:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 592.28018 1182.54581 0.42267 0.00025034 -0.092505 -5.4789E-05 0.33017 0.00019555 592.2803351001172 49.012 0.040165 52.641 52.62 52.66 3.6291 -0.21413 -0.00044342 NaN 90.135 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 90899 34948 2721 22316 22327 -0.03816329187861811 RFEEKHAYF 9 Unmodified _RFEEKHAYF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-SECPEP UPN48_class_I_Rep_2 6 409.90338134765625 3 409.536612 1225.58801 0.089371 3.6601E-05 0.10509 4.304E-05 0.19447 7.9641E-05 409.5365287918186 30.907 0.79789 34.542 34.02 34.818 3.6351 145 86 3 0 0 0 0.10553 1 4512 4512 13.615 5.4593 1 129880 34949 1564 22317 22328 40089 40089 -0.015763537795010052 RFEIDTMKA 9 Unmodified _RFEIDTMKA_ 0 0 0 REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|6|1|sense REV__L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 555.78564453125 2 555.784241 1109.55393 NaN NaN NaN NaN NaN NaN NaN 21.558 1 24.982 24.482 25.482 3.4241 0 0 0 0.38639 1 2427 2427 3.9444 0 1 + 34950 29277 22318 22329 40090 40090 0.0035348173726106324 RFELATRTF 9 Unmodified _RFELATRTF_ 0 0 0 nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1 nc|ENSG00000003137|Q9NR63-2|CYP26B1 nc|ENSG00000003137|Q9NR63-2|CYP26B1 MULTI-MSMS UPN48_class_I_Rep_2 6 570.8114013671875 2 570.811648 1139.60874 0.41508 0.00023693 -0.036813 -2.1013E-05 0.37826 0.00021592 570.8115362692107 42.903 0.69392 46.661 46.276 46.97 3.7579 115 57 3 0 0 0 0.45441 1 7969 7969 4.897 0.56777 1 312340 34951 677 22319 22330 40091 40091 0.04452236600195647 RFFCHVYR 8 Unmodified _RFFCHVYR_ 0 0 0 REV__Tigger1_dup7220|chrX:19596191-19597414:-|1.6127622266370454|0.0157501503375258|6.68|151.0|37|3|sense REV__Tigger1_dup7220|chrX:19596191-19597414:-|1.6127622266370454|0.0157501503375258|6.68|151.0|37|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 563.7802124023438 2 564.282003 1126.54945 0.44176 0.00024928 -2.2923 -0.0012935 -1.8505 -0.0010442 564.280749044426 54.818 0.07795 58.004 57.956 58.034 3.1856 5 4 2 0 0 0 0.72333 1 12477 12477 2.3027 0.4585 1 52378 + 34952 32423 22320 22331 40092 40092 -0.008759378949889651 RFFCHVYR 8 Unmodified _RFFCHVYR_ 0 0 0 REV__Tigger1_dup7220|chrX:19596191-19597414:-|1.6127622266370454|0.0157501503375258|6.68|151.0|37|3|sense REV__Tigger1_dup7220|chrX:19596191-19597414:-|1.6127622266370454|0.0157501503375258|6.68|151.0|37|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 564.282003 1126.54945 0.46861 0.00026443 0.71943 0.00040596 1.188 0.00067039 564.7852598916911 54.325 0.051643 57.839 57.801 57.852 3.5143 -0.082458 0.002947 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 40883 + 34953 32423 22320 22331 -0.008759378949889651 RFFFDVFW 8 Unmodified _RFFFDVFW_ 0 0 0 REV__L1MA8_dup6249|chrX:74191726-74195125:-|1.9479785973326424|0.0770982704069936|4.66|151.0|179|2|anti-sense REV__L1MA8_dup6249|chrX:74191726-74195125:-|1.9479785973326424|0.0770982704069936|4.66|151.0|179|2|anti-sense MSMS UPN48_class_I_Rep_1 5 582.2877807617188 2 582.287277 1162.56 NaN NaN NaN NaN NaN NaN NaN 39.748 1 43.253 42.753 43.753 3.5048 0 0 0 0.40746 1 7055 7055 0.69038 0 1 + 34954 25563 22321 22332 40093 40093 -0.014776319689190132 RFFGKKISRG 10 Unmodified _RFFGKKISRG_ 0 0 0 REV__ENST00000295400.10_1_2:70677757-70680369:-|nuORF REV__ENST00000295400.10_1_2:70677757-70680369:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 598.8597412109375 2 598.356557 1194.69856 0.31413 0.00018796 1.5641 0.0009359 1.8783 0.0011239 598.3572846415906 52.439 0.18935 55.998 55.947 56.136 3.5585 27 15 2 0 0 0 0.54822 1 11670 11670 5.7319 1.4026 1 137680 + 34955 21648 22322 22333 40094 40094 0.10899910999410167 RFFHCCGW 8 Unmodified _RFFHCCGW_ 0 0 0 REV__L1P3_dup2646|chr12:9845175-9850042:-|1.222746642244923|0.1670852435825995|2.87|151.0|184|1|anti-sense REV__L1P3_dup2646|chr12:9845175-9850042:-|1.222746642244923|0.1670852435825995|2.87|151.0|184|1|anti-sense MSMS UPN48_class_I_Rep_1 5 528.2448120117188 2 528.220557 1054.42656 NaN NaN NaN NaN NaN NaN NaN 76.501 1 80.011 79.511 80.511 3.5102 0 0 0 0.40738 1 18170 18170 0.79363 0 1 + 34956 28888 22323 22334 40095 40095 -0.09847517617913581 RFFKKIKLQLS 11 Unmodified _RFFKKIKLQLS_ 0 0 0 L1MA5_dup114|chr1:119186305-119187583:-|1.125512539975586|0.2053536603944946|2.45|151.0|6|1|sense L1MA5_dup114|chr1:119186305-119187583:-|1.125512539975586|0.2053536603944946|2.45|151.0|6|1|sense L1MA5_dup114|chr1:119186305-119187583:-|1.125512539975586|0.2053536603944946|2.45|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 469.9665222167969 3 469.966007 1406.87619 NaN NaN NaN NaN NaN NaN NaN 61.072 1 61.072 60.572 61.572 0 0 0 0 0.38417 1 13574 13574 0.08335 0 1 34957 9867 22324 22335 40096 40096 0.18902741478746066 RFFLFICTE 9 Unmodified _RFFLFICTE_ 0 0 0 L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|280|2|anti-sense L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|280|2|anti-sense L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|280|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.8037719726562 2 588.299527 1174.5845 0.44899 0.00026414 2.9484 0.0017345 3.3973 0.0019987 588.8024736052002 37.032 0.082634 40.539 40.477 40.56 3.507 11 7 2 0 0 0 0.42249 1 6255 6255 6.7232 0 1 109880 34958 14564 22325 22336 40097 40097 0.004192601223167003 RFFLGFFPC 9 Unmodified _RFFLGFFPC_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|457|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|457|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|457|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.2841186523438 2 567.28368 1132.55281 NaN NaN NaN NaN NaN NaN NaN 17.2 1 20.726 20.226 21.226 3.5261 0 0 0 0.4029 1 961 961 0 0 1 34959 8242 22326 22337 40098 40098 -0.008166878409610945 RFFLLFFM 8 Unmodified _RFFLLFFM_ 0 0 0 L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|74|3|anti-sense L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|74|3|anti-sense L1MB8_dup13348|chr15:65754443-65755405:+|1.9678917394688216|0.0146533975840312|7.07|151.0|74|3|anti-sense MSMS UPN47_class_I_Rep_2 3 560.8054809570312 2 560.804248 1119.59394 NaN NaN NaN NaN NaN NaN NaN 77.066 1 80.397 79.897 80.897 3.3315 0 0 0 0.40604 1 19099 19099 2.5775 0.27475 1 34960 10936 22327 22338 40099 40099 0.038930731984919476 RFFLPFHK 8 Unmodified _RFFLPFHK_ 0 0 0 L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|107|1|anti-sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|107|1|anti-sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|107|1|anti-sense MSMS UPN47_class_I_Rep_1 2 545.828857421875 2 546.311087 1090.60762 NaN NaN NaN NaN NaN NaN NaN 55.001 1 58.502 58.002 59.002 3.5014 0 0 0 0.40746 1 12450 12450 0.69038 0 1 34961 10118 22328 22339 40100 40100 0.06594067021956107 RFFLPPLFE 9 Unmodified _RFFLPPLFE_ 0 0 0 REV__L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|153|1|anti-sense REV__L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|153|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 582.8236083984375 2 583.32386 1164.63317 0.50205 0.00029286 3.6728 0.0021424 4.1748 0.0024353 583.3260341943068 79.185 0.061539 79.185 79.139 79.2 0 6 5 2 0 0 0 0.12462 1 18582 18582 1.8442 0 1 95175 + 34962 25006 22329 22340 40101 40101 0.057434967536892145 RFFNWFYW 8 Unmodified _RFFNWFYW_ 0 0 0 ENSG00000139370|ENST00000266771|SLC15A4;ENSG00000110446.11,SLC15A3,chr11,-,I5.1,60938133,60939479|25|6.59|5|intron;ENSG00000110446.11,SLC15A3,chr11,-,I5.1,60938133,60939479|25|6.59|2|intron;ENSG00000110446.11,SLC15A3,chr11,-,I5.1,60938133,60939479|25|6.59|4|intron;ENSG00000110446.11,SLC15A3,chr11,-,I5.1,60938133,60939479|25|6.59|1|intron;ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000139370|ENST00000266771|SLC15A4;ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MSMS UPN48_class_I_Rep_1 5 633.30029296875 2 633.298176 1264.5818 NaN NaN NaN NaN NaN NaN NaN 31.36 1 34.894 34.394 35.394 3.5342 0 0 0 0.40746 1 4630 4630 0.69038 0 1 34963 3138;1941 22330 22341 40102 40102 -0.03990827220331994 RFFVDNYR 8 Unmodified _RFFVDNYR_ 0 0 0 REV__nc|ENSG00000186075|Q6X784-2|ZPBP2 REV__nc|ENSG00000186075|Q6X784-2|ZPBP2 MSMS UPN48_class_I_Rep_3 7 558.7807006835938 2 558.78289 1115.55123 NaN NaN NaN NaN NaN NaN NaN 29.851 1 33.58 33.08 34.08 3.7286 0 0 0 0.40404 1 4235 4235 5.2307 0.90143 1 + 34964 20873 22331 22342 40103 40103 -0.0019260560538896243 RFFVFILY 8 Unmodified _RFFVFILY_ 0 0 0 REV__L1MA6_dup3665|chr10:74324884-74325856:-|1.2452465088933713|0.0476200217196106|4.71|151.0|53|2|anti-sense REV__L1MA6_dup3665|chr10:74324884-74325856:-|1.2452465088933713|0.0476200217196106|4.71|151.0|53|2|anti-sense MSMS UPN46_class_I_Rep_3 1 552.8148803710938 2 552.81567 1103.61679 NaN NaN NaN NaN NaN NaN NaN 39.875 1 39.875 39.375 40.375 0 0 0 0 0.40581 1 7698 7698 2.8892 0 1 + 34965 25462 22332 22343 40104 40104 0.06912415587635223 RFFVSFLNC 9 Unmodified _RFFVSFLNC_ 0 0 0 ENSG00000122483.17,CCDC18,chr1,+,I18.1,93232594,93236247|27|7.29|1|intron ENSG00000122483.17,CCDC18,chr1,+,I18.1,93232594,93236247|27|7.29|1|intron ENSG00000122483.17,CCDC18,chr1,+,I18.1,93232594,93236247|27|7.29|1|intron MSMS UPN47_class_I_Rep_3 4 566.7840576171875 2 566.784044 1131.55354 NaN NaN NaN NaN NaN NaN NaN 17.259 1 20.617 20.117 21.117 3.3581 0 0 0 0.4029 1 1232 1232 0 0 1 34966 2387 22333 22344 40105 40105 -0.0069789319190931565 RFFWVCLF 8 Unmodified _RFFWVCLF_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|124|2|anti-sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|124|2|anti-sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|124|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2857666015625 2 559.286223 1116.55789 NaN NaN NaN NaN NaN NaN NaN 37.657 1 41.373 40.873 41.873 3.7164 0 0 0 0.40604 1 6469 6469 2.5775 0 1 34967 12126 22334 22345 40106 40106 0.004276160216249991 RFFYQPIY 8 Unmodified _RFFYQPIY_ 0 0 0 REV__HAL1ME_dup3213|chr6:35609190-35610284:-|2.2009876922354548|0.1610773390518543|3.77|151.0|50|2|anti-sense REV__HAL1ME_dup3213|chr6:35609190-35610284:-|2.2009876922354548|0.1610773390518543|3.77|151.0|50|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 567.7579345703125 2 567.292559 1132.57057 0.44 0.00024961 0.79162 0.00044908 1.2316 0.00069869 567.794915924004 67.705 0.04348 70.896 70.865 70.908 3.1914 6 2 3 0 0 0 0.72333 1 16407 16407 5.2307 0 1 40901 + 34968 23493 22335 22346 40107 40107 0.009583506855278756 RFGKEKTF 8 Unmodified _RFGKEKTF_ 0 0 0 L1MEc_dup17527|chr20:3346820-3347490:+|1.9425652311560413|0.0998145629899325|4.28|150.0|11|2|sense L1MEc_dup17527|chr20:3346820-3347490:+|1.9425652311560413|0.0998145629899325|4.28|150.0|11|2|sense L1MEc_dup17527|chr20:3346820-3347490:+|1.9425652311560413|0.0998145629899325|4.28|150.0|11|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 506.2806396484375 2 506.782359 1011.55016 0.17002 8.6162E-05 -1.7143 -0.00086879 -1.5443 -0.00078263 506.7819862915886 54.83 0.10143 58.332 58.273 58.374 3.5014 9 6 2 0 0 0 0.72333 1 12410 12410 2.5775 0 1 45064 34969 13058 22336 22347 40108 40108 0.04485180025699265 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MSMS UPN48_class_I_Rep_1 5 498.9425048828125 3 498.943147 1493.80761 0.18556 9.2584E-05 0.56631 0.00028256 0.75187 0.00037514 498.9433576481721 45.789 1.0966 49.305 48.958 50.055 3.5162 171 74 3 0 0 0 0.67356 1 9000 9000 1.1098 1.1098 1 663620 + 34970 20935 22337 22348 40109 40109 0.08045889951563368 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MATCH UPN47_class_I_Rep_1 2 3 498.943147 1493.80761 -0.10334 -5.1561E-05 0.46342 0.00023122 0.36008 0.00017966 498.9433269059831 45.25 0.56854 48.95 48.737 49.306 3.6999 -0.22774 -0.00023687 NaN 1.1098 50 31 2 NaN NaN NaN NaN 0 NaN NaN 0 110790 + 34971 20935 22337 22348 0.08045889951563368 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MATCH UPN47_class_I_Rep_2 3 3 498.943147 1493.80761 0.024835 1.2391E-05 0.73279 0.00036562 0.75763 0.00037801 498.94340538617485 45.751 0.49211 49.104 48.807 49.299 3.3535 -0.073323 0.00016633 NaN 1.1098 53 29 2 NaN NaN NaN NaN 0 NaN NaN 0 58476 + 34972 20935 22337 22348 0.08045889951563368 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MATCH UPN47_class_I_Rep_3 4 3 498.943147 1493.80761 0.049691 2.4793E-05 0.85818 0.00042818 0.90787 0.00045298 498.9433442835795 45.805 0.62386 49.049 48.781 49.405 3.2441 -0.12882 0.00035402 NaN 1.1098 45 34 2 NaN NaN NaN NaN 0 NaN NaN 0 121690 + 34973 20935 22337 22348 0.08045889951563368 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 498.943147 1493.80761 0.18556 9.2584E-05 0.56631 0.00028256 0.75187 0.00037514 498.9433576481721 45.789 1.0966 49.305 48.958 50.055 3.5162 0.12727 -8.2854E-05 NaN 1.1098 171 74 3 NaN NaN NaN NaN 0 NaN NaN 0 663620 + 34974 20935 22337 22348 0.08045889951563368 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 498.943147 1493.80761 0.20092 0.00010025 0.60404 0.00030138 0.80497 0.00040163 498.94341303301115 45.488 0.92507 49.246 48.889 49.814 3.7579 0.067835 -2.6379E-05 NaN 1.1098 197 69 4 NaN NaN NaN NaN 0 NaN NaN 0 608130 + 34975 20935 22337 22348 0.08045889951563368 RFGRFRQRSRE 11 Unmodified _RFGRFRQRSRE_ 0 0 0 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 REV__ENSG00000187626|ENST00000377294|ZKSCAN4 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 498.943147 1493.80761 0.17763 8.8627E-05 0.67727 0.00033792 0.8549 0.00042655 498.94340785956416 45.776 0.90379 49.413 49.031 49.935 3.6369 0.23477 8.3228E-05 NaN 1.1098 144 63 3 NaN NaN NaN NaN 0 NaN NaN 0 709940 + 34976 20935 22337 22348 0.08045889951563368 RFGVFFID 8 Unmodified _RFGVFFID_ 0 0 0 REV__Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|102|2|anti-sense REV__Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|102|2|anti-sense MSMS UPN47_class_I_Rep_2 3 500.76617431640625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 21.419 1 24.843 24.343 25.343 3.4241 0 0 0 0.40604 1 2391 2391 2.5775 0 1 + 34977 32395 22338 22349 40110 40110 0.018023926227101583 RFGVRRMY 8 Unmodified _RFGVRRMY_ 0 0 0 REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF MSMS UPN47_class_I_Rep_1 2 542.796630859375 2 542.795278 1083.576 NaN NaN NaN NaN NaN NaN NaN 60.457 1 63.838 63.338 64.338 3.3815 0 0 0 0.40604 1 14110 14110 2.5775 0 1 + 34978 22104 22339 22350 40111 40111 0.03755750996333518 RFGWEDKAY 9 Unmodified _RFGWEDKAY_ 0 0 0 THE1C_dup94|chr1:28420200-28420583:+|1.286103161701164|0.0092965809114749|7.11|151.0|26|2|anti-sense THE1C_dup94|chr1:28420200-28420583:+|1.286103161701164|0.0092965809114749|7.11|151.0|26|2|anti-sense THE1C_dup94|chr1:28420200-28420583:+|1.286103161701164|0.0092965809114749|7.11|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_1 2 586.2775268554688 2 586.28018 1170.54581 NaN NaN NaN NaN NaN NaN NaN 72.314 1 75.694 75.194 76.194 3.3799 0 0 0 0.29868 1 17687 17687 10.824 0.75 1 34979 32936 22340 22351 40112 40112 -0.03264329187868498 RFHACEPE 8 Unmodified _RFHACEPE_ 0 0 0 REV__ENST00000309352.3_1_17:73894896-73894956:-|nuORF REV__ENST00000309352.3_1_17:73894896-73894956:-|nuORF MSMS UPN47_class_I_Rep_2 3 494.71893310546875 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 113.86 1 117.37 116.87 117.87 3.5109 0 0 0 0.40604 1 27707 27707 2.5775 0 1 + 34980 21700 22341 22352 40113 40113 -0.07096489190939792 RFHACEPE 8 Unmodified _RFHACEPE_ 0 0 0 REV__ENST00000309352.3_1_17:73894896-73894956:-|nuORF REV__ENST00000309352.3_1_17:73894896-73894956:-|nuORF MSMS UPN48_class_I_Rep_2 6 494.7193908691406 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 27.738 1 31.369 30.869 31.869 3.6311 0 0 0 0.40625 1 3718 3718 2.3027 0 1 + 34981 21700 22341 22352 40114 40114 -0.07096489190939792 RFHDHLLR 8 Unmodified _RFHDHLLR_ 0 0 0 REV__MER90a_dup567|chr8:89728282-89728824:-|1.0650363314722664|0.1479827733349793|2.85|151.0|10|2|sense REV__MER90a_dup567|chr8:89728282-89728824:-|1.0650363314722664|0.1479827733349793|2.85|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 547.3028564453125 2 547.304324 1092.5941 NaN NaN NaN NaN NaN NaN NaN 24.451 1 28.016 27.516 28.516 3.5655 0 0 0 0.40746 1 2702 2702 0.69038 0 1 + 34982 31575 22342 22353 40115 40115 0.05150209242697201 RFHFSRFHY 9 Unmodified _RFHFSRFHY_ 0 0 0 MER44C_dup358|chr6:30321343-30322091:-|1.760874706431112|0.1158604251827759|3.93|151.0|1|1|sense MER44C_dup358|chr6:30321343-30322091:-|1.760874706431112|0.1158604251827759|3.93|151.0|1|1|sense MER44C_dup358|chr6:30321343-30322091:-|1.760874706431112|0.1158604251827759|3.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 432.8851623535156 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 62.011 1 65.521 65.021 66.021 3.5104 0 0 0 0.40038 1 13751 13751 0.26902 0 1 34983 15984 22343 22354 40116 40116 -0.004781192115160593 RFHGIKYIQ 9 Unmodified _RFHGIKYIQ_ 0 0 0 L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|45|2|anti-sense L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|45|2|anti-sense L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_3 4 581.3287963867188 2 581.330008 1160.64546 NaN NaN NaN NaN NaN NaN NaN 61.819 1 64.985 64.485 65.485 3.1667 0 0 0 0.39518 1 14611 14611 1.8442 0.19162 1 34984 10467 22344 22355 40117 40117 0.07156533216766547 RFHKKLKY 8 Unmodified _RFHKKLKY_ 0 0 0 L1MA4A_dup1506|chr4:67442395-67443138:+|1.2343070411986587|0.0923436025777183|3.74|150.0|8|2|sense L1MA4A_dup1506|chr4:67442395-67443138:+|1.2343070411986587|0.0923436025777183|3.74|150.0|8|2|sense L1MA4A_dup1506|chr4:67442395-67443138:+|1.2343070411986587|0.0923436025777183|3.74|150.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 560.3429565429688 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 82.251 1 85.764 85.264 86.264 3.5122 0 0 0 0.40746 1 20545 20545 0.69038 0 1 34985 9762 22345 22356 40118 40118 0.11669427459014514 RFHQWWYVP 9 Unmodified _RFHQWWYVP_ 0 0 0 L1MC5_dup7602|chr9:19358290-19359235:-|1.0884018238246682|0.1060939212848658|3.36|151.0|67|3|anti-sense L1MC5_dup7602|chr9:19358290-19359235:-|1.0884018238246682|0.1060939212848658|3.36|151.0|67|3|anti-sense L1MC5_dup7602|chr9:19358290-19359235:-|1.0884018238246682|0.1060939212848658|3.36|151.0|67|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.7987365722656 3 440.220847 1317.64071 -0.6891 -0.00030336 -1.0251 -0.00045125 -1.7142 -0.00075461 440.22065644423935 26.932 0.10016 30.431 30.402 30.502 3.4986 14 8 2 0 0 0 0.12516 1 3972 3972 1.0715 0.29493 1 49031 34986 11697 22346 22357 40119 40119 -0.005403509260304418 RFHYVEVW 8 Unmodified _RFHYVEVW_ 0 0 0 REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|50|3|sense REV__L1ME1_dup10637|chr5:151188948-151190383:+|1.297011848125412|0.0506588766798793|4.68|151.0|50|3|sense MSMS UPN47_class_I_Rep_1 2 567.8308715820312 2 568.287808 1134.56106 NaN NaN NaN NaN NaN NaN NaN 82.551 1 86.063 85.563 86.563 3.5122 0 0 0 0.40746 1 20626 20626 0.69038 0 1 + 34987 27564 22347 22358 40120 40120 -0.0008341759998984344 RFIDAVYKL 9 Unmodified _RFIDAVYKL_ 0 0 0 nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44 nc|ENSG00000164118|Q9C0F1-2|CEP44 nc|ENSG00000164118|Q9C0F1-2|CEP44 MULTI-MSMS UPN48_class_I_Rep_2 6 562.8264770507812 2 562.826766 1123.63898 0.60512 0.00034058 -0.71698 -0.00040354 -0.11186 -6.296E-05 562.8263515502399 56.501 0.037773 60.034 60.008 60.046 3.5333 4 2 2 0 0 0 0.47763 1 12142 12142 2.9952 0 1 120470 34988 4085 22348 22359 40121 40121 0.08210595265359188 RFIFMLLLIS 10 Unmodified _RFIFMLLLIS_ 0 0 0 REV__Tigger1_dup9092|chr12:45874350-45874841:-|1.218346850411684|0.0175951117437223|6.11|151.0|21|1|anti-sense REV__Tigger1_dup9092|chr12:45874350-45874841:-|1.218346850411684|0.0175951117437223|6.11|151.0|21|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 417.9203796386719 3 418.254389 1251.74134 0.049146 2.0555E-05 1.2683 0.00053049 1.3175 0.00055104 418.25493638934915 47.247 0.21785 47.247 47.084 47.302 0 33 22 2 0 0 0 0.84575 1 9761 9761 0.77653 0 1 252250 + 34989 32562 22349 22360 40122 40122 0.12553545012656286 RFIGATANF 9 Unmodified _RFIGATANF_ 0 0 0 ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C MULTI-MSMS UPN48_class_I_Rep_1 5 498.766845703125 2 498.766709 995.518865 0.17587 8.7718E-05 0.13874 6.92E-05 0.31461 0.00015692 498.7667166903054 48.492 1.094 52.016 51.58 52.674 3.5239 188 76 4 0 0 0 0.0050147 4 9649 9607;9649;9687;9727 114.19 46.106 1 1133500 34990 4597 22350 22361 40123;40124;40125;40126 40124 0.02092606991595858 RFIGATANF 9 Unmodified _RFIGATANF_ 0 0 0 ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C MULTI-MSMS UPN48_class_I_Rep_2 6 498.76678466796875 2 498.766709 995.518865 0.19 9.4764E-05 0.10861 5.4172E-05 0.29861 0.00014894 498.7667115398219 48.194 1.1998 51.93 51.496 52.696 3.7361 191 82 3 0 0 0 0.0050147 5 9538 9497;9538;9578;9617;9658 133.05 54.903 1 988540 34991 4597 22350 22361 40127;40128;40129;40130;40131 40128 0.02092606991595858 RFIGATANF 9 Unmodified _RFIGATANF_ 0 0 0 ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C MULTI-MSMS UPN48_class_I_Rep_3 7 498.7667541503906 2 498.766709 995.518865 0.16972 8.4648E-05 0.063961 3.1902E-05 0.23368 0.00011655 498.7667371349886 48.341 1.2061 51.975 51.54 52.746 3.6339 212 88 4 0 0 0 0.0050147 4 9538 9494;9538;9578;9616 121.53 43.385 1 1051900 34992 4597 22350 22361 40132;40133;40134;40135 40133 0.02092606991595858 RFIKKWVKI 9 Unmodified _RFIKKWVKI_ 0 0 0 REV__L1PB1_dup2328|chr3:105403296-105404995:+|4.400762462338808|0.0260023733862323|7.4|151.0|55|3|sense REV__L1PB1_dup2328|chr3:105403296-105404995:+|4.400762462338808|0.0260023733862323|7.4|151.0|55|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 405.9325256347656 3 406.600888 1216.78083 -1.2662 -0.00051485 2.7283 0.0011093 1.4621 0.00059448 406.6019308784373 32.329 0.12926 35.615 35.586 35.715 3.2867 12 9 2 0 0 0 0.12509 1 5636 5636 1.1933 0.92432 1 27200 + 34993 30366 22351 22362 40136 40136 0.18111433078365735 RFIKWFPL 8 Unmodified _RFIKWFPL_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|369|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|369|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.8298950195312 2 553.829112 1105.64367 NaN NaN NaN NaN NaN NaN NaN 79.164 1 82.807 82.307 83.307 3.6423 0 0 0 0.40746 1 18763 18763 0.69038 0 1 + 34994 30694 22352 22363 40137 40137 0.09507524198784267 RFIKWFPL 8 Unmodified _RFIKWFPL_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|369|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|369|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.82958984375 2 553.829112 1105.64367 NaN NaN NaN NaN NaN NaN NaN 79.287 1 82.929 82.429 83.429 3.6423 0 0 0 0.40738 1 18795 18795 0.79363 0 1 + 34995 30694 22352 22363 40138 40138 0.09507524198784267 RFIPYTEEF 9 Unmodified _RFIPYTEEF_ 0 0 0 nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MULTI-MSMS UPN48_class_I_Rep_1 5 601.2974243164062 2 601.298039 1200.58152 0.58564 0.00035215 0.034206 2.0568E-05 0.61985 0.00037271 601.2978058680101 60.848 0.79886 64.322 63.899 64.698 3.4737 115 64 2 0 0 0 0.081756 5 13446 13429;13446;13469;13544;13572 38.176 25.133 1 351920 34996 1826 22353 22364 40139;40140;40141;40142;40143 40140 -0.010742917308789401 RFIPYTEEF 9 Unmodified _RFIPYTEEF_ 0 0 0 nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MULTI-MSMS UPN48_class_I_Rep_2 6 601.2980346679688 2 601.298039 1200.58152 0.55242 0.00033217 0.012638 7.5992E-06 0.56506 0.00033977 601.2977301532084 60.681 0.60625 64.159 63.992 64.598 3.4785 94 56 2 0 0 0 0.028995 4 13453 13380;13416;13453;13489 57.722 34.986 1 344870 34997 1826 22353 22364 40144;40145;40146;40147 40146 -0.010742917308789401 RFIPYTEEF 9 Unmodified _RFIPYTEEF_ 0 0 0 nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MULTI-MSMS UPN48_class_I_Rep_3 7 601.298583984375 2 601.298039 1200.58152 0.5326 0.00032025 -0.23434 -0.00014091 0.29827 0.00017935 601.2977798350269 60.677 0.83574 64.19 63.758 64.593 3.5129 129 79 2 0 0 0 0.048662 5 13345 13267;13309;13326;13345;13377 49.554 32.441 1 325620 34998 1826 22353 22364 40148;40149;40150;40151;40152 40151 -0.010742917308789401 RFIRMLRFV 9 Unmodified _RFIRMLRFV_ 0 0 0 REV__ENSG00000124134|ENST00000537075|KCNS1 REV__ENSG00000124134|ENST00000537075|KCNS1 MSMS UPN46_class_I_Rep_3 1 619.3718872070312 2 619.371153 1236.72775 NaN NaN NaN NaN NaN NaN NaN 96.713 1 96.713 96.213 97.213 0 0 0 0 0.4007 1 23518 23518 0.52476 0 1 + 34999 18795 22354 22365 40153 40153 0.11885732024052231 RFIRMLRFV 9 Unmodified _RFIRMLRFV_ 0 0 0 REV__ENSG00000124134|ENST00000537075|KCNS1 REV__ENSG00000124134|ENST00000537075|KCNS1 MULTI-MSMS UPN48_class_I_Rep_1 5 619.3718872070312 2 619.371153 1236.72775 0.42423 0.00026275 0.49538 0.00030682 0.9196 0.00056958 619.371293516416 92.794 0.46245 96.418 96.162 96.625 3.624 81 63 2 0 0 0 0.50088 1 22305 22305 0.52476 0.52476 1 264760 + 35000 18795 22354 22365 40154 40154 0.11885732024052231 RFIRMLRFV 9 Unmodified _RFIRMLRFV_ 0 0 0 REV__ENSG00000124134|ENST00000537075|KCNS1 REV__ENSG00000124134|ENST00000537075|KCNS1 MULTI-MSMS UPN48_class_I_Rep_2 6 619.3712158203125 2 619.371153 1236.72775 0.49234 0.00030494 0.50046 0.00030997 0.9928 0.00061491 619.3712698368914 92.723 0.52274 96.486 96.215 96.738 3.7629 104 73 2 0 0 0 0.50088 2 22006 22006;22088 0.52476 0.066424 1 246030 + 35001 18795 22354 22365 40155;40156 40155 0.11885732024052231 RFIRMLRFV 9 Unmodified _RFIRMLRFV_ 0 0 0 REV__ENSG00000124134|ENST00000537075|KCNS1 REV__ENSG00000124134|ENST00000537075|KCNS1 MULTI-MSMS UPN48_class_I_Rep_3 7 619.873291015625 2 619.371153 1236.72775 0.58943 0.00036507 0.53059 0.00032863 1.12 0.0006937 619.3713043660686 92.748 0.25232 96.626 96.581 96.834 3.8782 61 36 2 0 0 0 0.50088 1 22000 22000 0.52476 0.52476 1 229730 + 35002 18795 22354 22365 40157 40157 0.11885732024052231 RFIRMLRFV 9 Unmodified _RFIRMLRFV_ 0 0 0 REV__ENSG00000124134|ENST00000537075|KCNS1 REV__ENSG00000124134|ENST00000537075|KCNS1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 619.371153 1236.72775 0.58943 0.00036507 0.53059 0.00032863 1.12 0.0006937 619.3713043660686 92.748 0.25232 96.626 96.581 96.834 3.8782 -0.0032354 7.956E-05 NaN 0.52476 61 36 2 NaN NaN NaN NaN 0 NaN NaN 0 229730 + 35003 18795 22354 22365 0.11885732024052231 RFIWWTPCP 9 Unmodified _RFIWWTPCP_ 0 0 0 REV__L1ME2z_dup2361|chr6:35046476-35047026:-|1.299481011766876|0.0787075326733221|4.05|151.0|5|1|sense REV__L1ME2z_dup2361|chr6:35046476-35047026:-|1.299481011766876|0.0787075326733221|4.05|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 603.248291015625 2 603.299862 1204.58517 NaN NaN NaN NaN NaN NaN NaN 35.674 1 39.086 38.586 39.586 3.4114 0 0 0 0.39428 1 6605 6605 2.0598 0.40713 1 + 35004 27910 22355 22366 40158 40158 -0.008939004379953985 RFKEGVQFQ 9 Unmodified _RFKEGVQFQ_ 0 0 0 L1PA7_dup9867|chr11:77796114-77798302:+|2.1740733061943103|0.0222861722637171|6.61|150.0|82|1|anti-sense;L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|186|2|anti-sense L1PA7_dup9867|chr11:77796114-77798302:+|2.1740733061943103|0.0222861722637171|6.61|150.0|82|1|anti-sense L1PA7_dup9867|chr11:77796114-77798302:+|2.1740733061943103|0.0222861722637171|6.61|150.0|82|1|anti-sense MSMS UPN48_class_I_Rep_2 6 569.8041381835938 2 569.803823 1137.59309 NaN NaN NaN NaN NaN NaN NaN 39.083 1 42.813 42.313 43.313 3.7297 0 0 0 0.39518 1 6893 6893 1.8442 0 1 35005 14789 22356 22367 40159 40159 0.029799500831586556 RFKKKKKKLKL 11 Unmodified _RFKKKKKKLKL_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|145|3|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|145|3|sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|145|3|sense MSMS UPN46_class_I_Rep_3 1 482.34368896484375 3 482.344929 1444.01296 NaN NaN NaN NaN NaN NaN NaN 91.427 1 91.427 90.927 91.927 0 0 0 0 0.38417 1 22085 22085 0.094841 0 1 35006 13907 22357 22368 40160 40160 0.3087127542910366 RFKLIEEL 8 Unmodified _RFKLIEEL_ 0 0 0 REV__L1M4b_dup2275|chr9:112207499-112208953:-|1.641527000433022|0.2926776817027767|2.49|151.0|16|1|sense REV__L1M4b_dup2275|chr9:112207499-112208953:-|1.641527000433022|0.2926776817027767|2.49|151.0|16|1|sense MSMS UPN47_class_I_Rep_1 2 524.7987670898438 2 524.313492 1046.61243 NaN NaN NaN NaN NaN NaN NaN 96.339 1 100.12 99.616 100.62 3.7767 0 0 0 0.40404 1 23885 23885 5.2307 0 1 + 35007 24533 22358 22369 40161 40161 0.09098906374060789 RFKMHFWF 8 Unmodified _RFKMHFWF_ 0 0 0 REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|140|1|anti-sense REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|140|1|anti-sense MSMS UPN47_class_I_Rep_2 3 599.802978515625 2 599.802571 1197.59059 NaN NaN NaN NaN NaN NaN NaN 67.554 1 70.818 70.318 71.318 3.2636 0 0 0 0.40746 1 16300 16300 0.69038 0 1 + 35008 30508 22359 22370 40162 40162 -0.0003017685551185423 RFKPKGNLKK 10 Unmodified _RFKPKGNLKK_ 0 0 0 L1M4b_dup3983|chr18:46113377-46115023:-|2.178303236510847|0.1463306955920616|3.9|151.0|27|2|sense L1M4b_dup3983|chr18:46113377-46115023:-|2.178303236510847|0.1463306955920616|3.9|151.0|27|2|sense L1M4b_dup3983|chr18:46113377-46115023:-|2.178303236510847|0.1463306955920616|3.9|151.0|27|2|sense MSMS UPN47_class_I_Rep_1 2 608.4057006835938 2 608.387857 1214.76116 NaN NaN NaN NaN NaN NaN NaN 107.93 1 111.57 111.07 112.07 3.6355 0 0 0 0.53105 1 26477 26477 6.2058 0.47393 1 35009 9010 22360 22371 40163 40163 0.16237057067587557 RFKRNFSKL 9 Unmodified _RFKRNFSKL_ 0 0 0 Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|62|3|anti-sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|62|3|anti-sense Charlie10_dup790|chr11:73053146-73054035:+|2.558223896778736|0.011276280950806|7.83|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_2 3 598.357666015625 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 52.643 1 55.976 55.476 56.476 3.3332 0 0 0 0.37891 1 11756 11756 5.7319 0 1 35010 440 22361 22372 40164 40164 0.10899910999432905 RFKRVIQYNPE 11 Unmodified _RFKRVIQYNPE_ 0 0 0 REV__MLT1G3_dup2018|chr12:120874796-120875257:+|2.5186890888606577|0.0096011322470944|8.04|151.0|16|3|sense REV__MLT1G3_dup2018|chr12:120874796-120875257:+|2.5186890888606577|0.0096011322470944|8.04|151.0|16|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 483.93658447265625 3 483.936887 1448.78883 0.16274 7.8756E-05 -0.4393 -0.00021259 -0.27656 -0.00013384 483.93664154706465 38.586 0.90079 42.091 41.717 42.618 3.5048 161 74 3 0 0 0 0.67113 1 6758 6758 1.3296 1.3296 1 526860 + 35011 31735 22362 22373 40165 40165 0.08238915537208413 RFKRVIQYNPE 11 Unmodified _RFKRVIQYNPE_ 0 0 0 REV__MLT1G3_dup2018|chr12:120874796-120875257:+|2.5186890888606577|0.0096011322470944|8.04|151.0|16|3|sense REV__MLT1G3_dup2018|chr12:120874796-120875257:+|2.5186890888606577|0.0096011322470944|8.04|151.0|16|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 483.936887 1448.78883 0.20553 9.9463E-05 -0.49145 -0.00023783 -0.28593 -0.00013837 483.936597338908 38.199 0.94509 41.915 41.457 42.402 3.7164 -0.075297 -9.4701E-05 NaN 1.3296 246 92 3 NaN NaN NaN NaN 0 NaN NaN 0 409480 + 35012 31735 22362 22373 0.08238915537208413 RFKRYRGY 8 Unmodified _RFKRYRGY_ 0 0 0 L1ME3D_dup1942|chr7:149483630-149484870:+|1.491725387620763|0.1779877131540281|3.07|151.0|20|2|sense L1ME3D_dup1942|chr7:149483630-149484870:+|1.491725387620763|0.1779877131540281|3.07|151.0|20|2|sense L1ME3D_dup1942|chr7:149483630-149484870:+|1.491725387620763|0.1779877131540281|3.07|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 573.3199462890625 2 573.319974 1144.6254 NaN NaN NaN NaN NaN NaN NaN 95.42 1 99.328 98.828 99.828 3.9084 0 0 0 0.40746 1 22618 22618 0.69038 0 1 35013 12792 22363 22374 40166 40166 0.058867822767979305 RFKTNKTT 8 Unmodified _RFKTNKTT_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|62|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|62|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|62|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 498.2840270996094 2 498.285266 994.555979 -0.38227 -0.00019048 -1.516 -0.0007554 -1.8983 -0.00094588 498.2842487452592 31.459 0.39412 34.758 34.48 34.874 3.2991 46 32 2 0 0 0 0.82752 1 5324 5324 0.69038 0 1 42192 35014 8522 22364 22375 40167 40167 0.058482785373598745 RFKTQYRS 8 Unmodified _RFKTQYRS_ 0 0 0 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 REV__nc|ENSG00000121289|Q96ST8-3|CEP89 MSMS UPN48_class_I_Rep_3 7 543.77001953125 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 32.415 1 36.104 35.604 36.604 3.6896 0 0 0 0.40625 1 4925 4925 2.3027 0 1 + 35015 18725 22365 22376 40168 40168 0.03887083285940207 RFKWFKVL 8 Unmodified _RFKWFKVL_ 0 0 0 L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|267|3|anti-sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|267|3|anti-sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|267|3|anti-sense MSMS UPN48_class_I_Rep_3 7 562.3443603515625 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 79.261 1 82.904 82.404 83.404 3.6423 0 0 0 0.40746 1 18787 18787 0.69038 0 1 35016 10512 22366 22377 40169 40169 0.11379213090117446 RFLAVGLV 8 Unmodified _RFLAVGLV_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-SECPEP UPN48_class_I_Rep_3 7 437.2674865722656 2 437.779088 873.543623 0.047682 2.0874E-05 1.187 0.00051965 1.2347 0.00054053 437.77937746626026 49.054 0.16175 52.683 52.612 52.773 3.6291 17 11 2 0 0 0 0.72333 1 9823 9823 2.5775 0 1 78919 35017 5270 22367 22378 40170 40170 0.10179286865002268 RFLCPYVA 8 Unmodified _RFLCPYVA_ 0 0 0 L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|263|3|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|263|3|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|263|3|anti-sense MSMS UPN46_class_I_Rep_3 1 484.7545471191406 2 484.754756 967.494958 NaN NaN NaN NaN NaN NaN NaN 93.979 1 93.979 93.479 94.479 0 0 0 0 0.40738 1 22791 22791 0.79363 0 1 35018 9823 22368 22379 40171 40171 0.009910502335856108 RFLKMVCR 8 Unmodified _RFLKMVCR_ 0 0 0 LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_1 5 526.7971801757812 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 26.591 1 30.157 29.657 30.657 3.5667 0 0 0 0.40625 1 3290 3290 2.3027 0 1 35019 15550 22369 22380 40172 40172 0.05458463409786418 RFLKMVCR 8 Unmodified _RFLKMVCR_ 0 0 0 LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7981567382812 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 21.177 1 24.844 24.344 25.344 3.6667 0 0 0 0.40746 1 1943 1943 0.69038 0 1 35020 15550 22369 22380 40173 40173 0.05458463409786418 RFLKMVCR 8 Unmodified _RFLKMVCR_ 0 0 0 LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2394409179688 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 22.887 1 26.638 26.138 27.138 3.7507 0 0 0 0.40746 1 2411 2411 0.69038 0 1 35021 15550 22369 22380 40174 40174 0.05458463409786418 RFLLAGRRRWR 11 Unmodified _RFLLAGRRRWR_ 0 0 0 REV__L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|359|3|anti-sense REV__L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|359|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2952575683594 3 496.304127 1485.89055 NaN NaN NaN NaN NaN NaN NaN 78.604 1 78.604 78.104 79.104 0 0 0 0 0.38417 1 18418 18418 0.08335 0 1 + 35022 29523 22370 22381 40175 40175 0.16704251470241616 RFLLYAMDS 9 Unmodified _RFLLYAMDS_ 0 0 0 ENSG00000143013|ENST00000370544|LMO4 ENSG00000143013|ENST00000370544|LMO4 ENSG00000143013|ENST00000370544|LMO4 MSMS UPN47_class_I_Rep_3 4 558.2845458984375 2 558.281334 1114.54812 NaN NaN NaN NaN NaN NaN NaN 51.029 1 54.245 53.745 54.745 3.2163 0 0 0 0.38478 1 11322 11322 4.3292 0.73274 1 35023 3271 22371 22382 40176 40176 -0.004576167744062332 RFLPHIPPW 9 Unmodified _RFLPHIPPW_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|167|3|anti-sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|167|3|anti-sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|167|3|anti-sense MSMS UPN47_class_I_Rep_1 2 581.830810546875 2 581.829643 1161.64473 NaN NaN NaN NaN NaN NaN NaN 66.777 1 70.138 69.638 70.638 3.3611 0 0 0 0.38299 1 16018 16018 4.756 0.81161 1 35024 16066 22372 22383 40177 40177 0.07037738567692031 RFLPNHVWT 9 Unmodified _RFLPNHVWT_ 0 0 0 L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|16|2|sense L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|16|2|sense L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 585.31396484375 2 585.314358 1168.61416 0.60255 0.00035268 -1.2062 -0.00070602 -0.60367 -0.00035333 585.3133668966399 55.595 0.52253 59.151 58.989 59.512 3.5559 53 33 2 0 0 0 0.42249 1 11928 11928 6.7232 0.51738 1 172970 35025 11557 22373 22384 40178 40178 0.03659960182631039 RFLRPPTRPR 10 Unmodified _RFLRPPTRPR_ 0 0 0 ENST00000264377.7_1_2:207308583-207310043:+|nuORF ENST00000264377.7_1_2:207308583-207310043:+|nuORF ENST00000264377.7_1_2:207308583-207310043:+|nuORF MSMS UPN47_class_I_Rep_3 4 432.5973815917969 3 432.598429 1294.77346 NaN NaN NaN NaN NaN NaN NaN 100.42 1 103.89 103.39 104.39 3.4671 0 0 0 0.53105 1 24810 24810 1.3296 0.70282 1 35026 5988 22374 22385 40179 40179 0.13786093530620747 RFLWDEAR 8 Unmodified _RFLWDEAR_ 0 0 0 REV__ENST00000370626.3_1_10:99446961-99447051:-|nuORF REV__ENST00000370626.3_1_10:99446961-99447051:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 546.7816162109375 2 546.78289 1091.55123 -0.006103 -3.337E-06 -1.4857 -0.00081235 -1.4918 -0.00081569 546.7819490308196 34.076 0.15172 37.774 37.658 37.81 3.6983 11 10 2 0 0 0 0.82752 1 6090 6090 0.69038 0 1 32040 + 35027 21955 22375 22386 40180 40180 0.009113943945976644 RFLYIHIY 8 Unmodified _RFLYIHIY_ 0 0 0 REV__L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|21|2|sense REV__L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 562.8162231445312 2 562.816202 1123.61785 NaN NaN NaN NaN NaN NaN NaN 79.674 1 83.14 82.64 83.64 3.465 0 0 0 0.40738 1 19860 19860 0.79363 0 1 + 35028 27075 22376 22387 40181 40181 0.060986299565229274 RFLYPYTEI 9 Unmodified _RFLYPYTEI_ 0 0 0 L1MA9_dup6415|chr6:149403976-149406045:+|1.4802615864447872|0.4116736797415197|1.85|151.0|77|1|anti-sense L1MA9_dup6415|chr6:149403976-149406045:+|1.4802615864447872|0.4116736797415197|1.85|151.0|77|1|anti-sense L1MA9_dup6415|chr6:149403976-149406045:+|1.4802615864447872|0.4116736797415197|1.85|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_1 5 601.2985229492188 2 601.316232 1200.61791 NaN NaN NaN NaN NaN NaN NaN 60.889 1 64.363 63.863 64.863 3.4737 0 0 0 0.39518 1 13506 13506 1.8442 0 1 35029 10148 22377 22388 40182 40182 0.02562585165856035 RFMGKYLH 8 Unmodified _RFMGKYLH_ 0 0 0 REV__MER21B_dup211|chr1:228085858-228086233:+|3.008826426255553|0.1893912467956411|3.99|151.0|3|1|sense REV__MER21B_dup211|chr1:228085858-228086233:+|3.008826426255553|0.1893912467956411|3.99|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 525.7918090820312 2 526.278929 1050.54331 NaN NaN NaN NaN NaN NaN NaN 29.685 1 33.316 32.816 33.816 3.6316 0 0 0 0.40738 1 4249 4249 0.79363 0 1 + 35030 31202 22378 22389 40183 40183 0.020055438734971176 RFMRKVLV 8 Unmodified _RFMRKVLV_ 0 0 0 REV__ENST00000517674.5_1_8:102644467-102676686:+|nuORF REV__ENST00000517674.5_1_8:102644467-102676686:+|nuORF MSMS UPN46_class_I_Rep_3 1 524.8278198242188 2 524.826047 1047.63754 NaN NaN NaN NaN NaN NaN NaN 99.384 1 99.384 98.884 99.884 0 0 0 0 0.40746 1 24209 24209 0.69038 0.088878 1 + 35031 17930 22379 22390 40184 40184 0.11562682695625881 RFMSIKSE 8 Unmodified _RFMSIKSE_ 0 0 0 REV__HAL1_dup11251|chr8:25218864-25220042:-|2.0141950745151465|0.0170253830915309|6.89|151.0|24|2|sense REV__HAL1_dup11251|chr8:25218864-25220042:-|2.0141950745151465|0.0170253830915309|6.89|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.2597961425781 2 499.260402 996.506251 -0.16977 -8.4762E-05 0.07318 3.6536E-05 -0.096594 -4.8226E-05 499.2604691379319 28.115 0.79572 31.614 31.038 31.834 3.4986 97 64 2 0 0 0 0.82752 1 4297 4297 2.3027 0 1 68159 + 35032 23333 22380 22391 40185 40185 0.007858275370836054 RFNANPFK 8 Unmodified _RFNANPFK_ 0 0 0 L1MB3_dup3530|chr3:136653757-136655481:+|1.480825283535807|0.0134722797356981|6.78|149.0|10|1|sense L1MB3_dup3530|chr3:136653757-136655481:+|1.480825283535807|0.0134722797356981|6.78|149.0|10|1|sense L1MB3_dup3530|chr3:136653757-136655481:+|1.480825283535807|0.0134722797356981|6.78|149.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 497.26690673828125 2 497.266876 992.519199 0.16639 8.2741E-05 -0.16758 -8.3334E-05 -0.0011916 -5.9252E-07 497.2667742606035 40.184 1.0163 43.835 43.604 44.62 3.6509 160 96 2 0 0 0 0.82752 1 7251 7251 2.3027 0.24298 1 194490 35033 10419 22381 22392 40186 40186 0.022640267114638846 RFNIHLLL 8 Unmodified _RFNIHLLL_ 0 0 0 REV__L1MA4_dup9466|chr19:9668401-9669545:+|2.3348815425258875|0.0794460721315924|4.88|151.0|48|1|anti-sense REV__L1MA4_dup9466|chr19:9668401-9669545:+|2.3348815425258875|0.0794460721315924|4.88|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_2 6 513.3165283203125 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 47.829 1 51.565 51.065 52.065 3.7361 0 0 0 0.40604 1 9490 9490 2.5775 0 1 + 35034 25230 22382 22393 40187 40187 0.10686049676382936 RFNPNNTI 8 Unmodified _RFNPNNTI_ 0 0 0 L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|24|1|sense L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|24|1|sense L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|24|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.2531433105469 2 488.253966 974.493378 0.071424 3.4873E-05 -1.8061 -0.00088186 -1.7347 -0.00084699 488.2530615072733 58.195 0.51848 61.361 61.136 61.655 3.1658 38 30 2 0 0 0 0.82752 1 13456 13456 2.0598 0 1 53912 35035 9546 22383 22394 40188 40188 0.005111324691824848 RFNWPTVL 8 Unmodified _RFNWPTVL_ 0 0 0 MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.7845458984375 2 516.784902 1031.55525 0.28369 0.00014661 -0.96953 -0.00050104 -0.68584 -0.00035443 516.7843985473809 76.289 0.49434 79.704 79.52 80.014 3.4149 63 43 2 0 0 0 0.82752 3 18907 18825;18907;18959 7.9102 0 1 103470 35036 16527 22384 22395 40189;40190;40191 40190 0.04073483888305418 RFNWPTVL 8 Unmodified _RFNWPTVL_ 0 0 0 MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.78564453125 2 516.784902 1031.55525 0.10468 5.4097E-05 -0.73553 -0.00038011 -0.63085 -0.00032601 516.7844332121215 76.456 0.4551 79.778 79.611 80.067 3.3216 81 45 2 0 0 0 0.82752 2 18893 18893;18980 4.3292 0 1 134910 35037 16527 22384 22395 40192;40193 40192 0.04073483888305418 RFNWPTVL 8 Unmodified _RFNWPTVL_ 0 0 0 MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.7838745117188 2 516.784902 1031.55525 0.30595 0.00015811 -0.89288 -0.00046143 -0.58693 -0.00030331 516.7844700309877 76.58 0.60937 79.849 79.494 80.104 3.269 85 61 2 0 0 0 0.82752 4 19086 18979;19015;19086;19090 7.9102 0 1 129010 35038 16527 22384 22395 40194;40195;40196;40197 40196 0.04073483888305418 RFPAARRQPL 10 Unmodified _RFPAARRQPL_ 0 0 0 ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3602294921875 2 606.359631 1210.70471 0.35123 0.00021297 2.4068 0.0014594 2.758 0.0016723 606.3606751075008 30.246 0.096712 30.246 30.182 30.279 0 11 7 3 0 0 0 0.56333 1 4904 4904 1.4819 0.28856 1 124190 35039 6797 22385 22396 40198 40198 0.10778429230913389 RFPAARRQPL 10 Unmodified _RFPAARRQPL_ 0 0 0 ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3611450195312 2 606.359631 1210.70471 0.39957 0.00024228 2.1102 0.0012796 2.5098 0.0015218 606.3609178370186 32.448 0.065762 32.448 32.427 32.493 0 8 3 3 0 0 0 0.56333 1 5564 5564 1.4819 0.15237 1 137700 35040 6797 22385 22396 40199 40199 0.10778429230913389 RFPAARRQPL 10 Unmodified _RFPAARRQPL_ 0 0 0 ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.8621826171875 2 606.359631 1210.70471 0.50336 0.00030522 2.5455 0.0015435 3.0489 0.0018487 606.8628411854509 37.146 0.030231 37.146 37.132 37.162 0 5 3 2 0 0 0 0.56333 1 6956 6956 1.4819 0.15237 1 125670 35041 6797 22385 22396 40200 40200 0.10778429230913389 RFPAARRQPL 10 Unmodified _RFPAARRQPL_ 0 0 0 ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF MSMS UPN46_class_I_Rep_3 1 606.3610229492188 2 606.359631 1210.70471 NaN NaN NaN NaN NaN NaN NaN 33.119 1 33.119 32.619 33.619 0 0 0 0 0.53105 1 5755 5755 1.4819 0.28856 1 35042 6797 22385 22396 40201 40201 0.10778429230913389 RFPAARRQPL 10 Unmodified _RFPAARRQPL_ 0 0 0 ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF ENST00000447280.6_1_2:224903403-224903487:-|nuORF MSMS UPN47_class_I_Rep_1 2 606.3613891601562 2 606.359631 1210.70471 NaN NaN NaN NaN NaN NaN NaN 109.93 1 113.54 113.04 114.04 3.6046 0 0 0 0.53105 1 27120 27120 1.4819 0.15237 1 35043 6797 22385 22396 40202 40202 0.10778429230913389 RFPEELTQTF 10 Unmodified _RFPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MSMS UPN48_class_I_Rep_1 5 634.6522827148438 2 634.319502 1266.62445 NaN NaN NaN NaN NaN NaN NaN 61.931 1 65.399 64.899 65.899 3.4678 0 0 0 0.53105 1 13820 13820 2.4985 0 1 35044 5759 22386 22397 40203 40203 0.0018047832654701779 RFPFGVIR 8 Unmodified _RFPFGVIR_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.295436 990.57632 -0.14684 -7.2875E-05 0.24254 0.00012037 0.095698 4.7495E-05 496.29545440913523 21.278 0.087872 21.278 21.245 21.333 0 16 7 4 0 0 0 0.82752 1 2356 2356 0.69038 0 1 516430 35045 10603 22387 22398 40204 40204 0.08065493987862737 RFPFGVIR 8 Unmodified _RFPFGVIR_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.295436 990.57632 -0.068577 -3.4035E-05 0.17582 8.7261E-05 0.10725 5.3226E-05 496.2954718305302 24.815 0.16659 24.815 24.702 24.869 0 25 16 3 0 0 0 0.82752 1 3313 3313 0.69038 0 1 180460 35046 10603 22387 22398 40205 40205 0.08065493987862737 RFPFGVIR 8 Unmodified _RFPFGVIR_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29534912109375 2 496.295436 990.57632 -0.019978 -9.915E-06 0.18676 9.2686E-05 0.16678 8.2771E-05 496.29548889350883 26.956 0.34513 26.956 26.932 27.277 0 45 28 3 0 0 0 0.82752 1 3960 3960 2.3027 0 1 1090100 35047 10603 22387 22398 40206 40206 0.08065493987862737 RFPFGVIR 8 Unmodified _RFPFGVIR_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.295436 990.57632 0.006293 3.1232E-06 0.11369 5.6423E-05 0.11998 5.9546E-05 496.2954407109461 28.206 0.26756 28.206 28.122 28.39 0 30 17 3 0 0 0 0.82752 1 4305 4305 0.69038 0 1 304200 35048 10603 22387 22398 40207 40207 0.08065493987862737 RFPFGVIR 8 Unmodified _RFPFGVIR_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.295436 990.57632 0.022944 1.1387E-05 0.22414 0.00011124 0.24708 0.00012263 496.29543906445076 28.946 0.11958 28.946 28.908 29.027 0 21 8 4 0 0 0 0.82752 1 4517 4517 2.3027 0 1 285470 35049 10603 22387 22398 40208 40208 0.08065493987862737 RFPFGVIR 8 Unmodified _RFPFGVIR_ 0 0 0 L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense L1MB5_dup2642|chr6:37906073-37906890:-|2.439332490574197|0.0065558060045618|8.54|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955017089844 2 496.295436 990.57632 0.16333 8.1059E-05 0.32485 0.00016122 0.48818 0.00024228 496.29545763875205 35.287 0.11003 35.287 35.252 35.362 0 17 7 3 0 0 0 0.82752 1 6406 6406 2.3027 0 1 732140 35050 10603 22387 22398 40209 40209 0.08065493987862737 RFPGSLEF 8 Unmodified _RFPGSLEF_ 0 0 0 REV__ENSG00000130158|ENST00000294618|DOCK6 REV__ENSG00000130158|ENST00000294618|DOCK6 MULTI-MSMS UPN47_class_I_Rep_1 2 476.74798583984375 2 476.747985 951.481417 0.094888 4.5238E-05 -0.31187 -0.00014868 -0.21698 -0.00010344 476.7478070974865 70.446 0.35213 73.817 73.587 73.939 3.3713 61 35 2 0 0 0 0.82752 1 17119 17119 4.756 0 1 89190 + 35051 18929 22388 22399 40210 40210 0.0037351572599391147 RFPGSLEF 8 Unmodified _RFPGSLEF_ 0 0 0 REV__ENSG00000130158|ENST00000294618|DOCK6 REV__ENSG00000130158|ENST00000294618|DOCK6 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 476.747985 951.481417 0.094888 4.5238E-05 -0.31187 -0.00014868 -0.21698 -0.00010344 476.7478070974865 70.446 0.35213 73.817 73.587 73.939 3.3713 -0.08603 -0.00014145 NaN 4.756 61 35 2 NaN NaN NaN NaN 0 NaN NaN 0 89190 + 35052 18929 22388 22399 0.0037351572599391147 RFPISPLLH 9 Unmodified _RFPISPLLH_ 0 0 0 L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.3219604492188 2 540.321651 1078.62875 0.5902 0.0003189 0.43499 0.00023503 1.0252 0.00055393 540.3216914769645 109.34 1.0724 112.87 112.7 113.77 3.5307 309 150 3 0 0 0 0.42249 1 26714 26714 6.7232 0 1 14527000 35053 10922 22389 22400 40211 40211 0.09258032330808419 RFPISPLLH 9 Unmodified _RFPISPLLH_ 0 0 0 L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 540.3219604492188 2 540.321651 1078.62875 0.47526 0.00025679 0.31211 0.00016864 0.78737 0.00042543 540.3216641407918 108.75 1.3284 112.42 112.25 113.58 3.6746 322 162 4 0 0 0 0.35081 1 25937 25937 10.824 0 1 85441000 35054 10922 22389 22400 40212 40212 0.09258032330808419 RFPISPLLH 9 Unmodified _RFPISPLLH_ 0 0 0 L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense L1MB8_dup12022|chr12:120804341-120805253:+|1.7970920682402796|0.0498853732546445|5.17|151.0|42|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 540.321651 1078.62875 0.59026 0.00031893 0.37665 0.00020351 0.96691 0.00052244 540.3216822912758 108.77 0.65746 112.3 112.08 112.74 3.5333 -0.050357 8.3189E-05 NaN 10.824 265 77 4 NaN NaN NaN NaN 0 NaN NaN 0 131260000 35055 10922 22389 22400 0.09258032330808419 RFPKELKIEL 10 Unmodified _RFPKELKIEL_ 0 0 0 L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|27|3|sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|27|3|sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 636.8875122070312 2 636.887355 1271.76016 0.57053 0.00036336 0.5707 0.00036347 1.1412 0.00072684 636.8874879761878 108.66 0.44942 112.3 112.17 112.62 3.6355 132 42 4 0 0 0 0.46742 1 26786 26786 14.405 3.6059 1 31376000 35056 15339 22390 22401 40213 40213 0.13514797908010223 RFPKELKIEL 10 Unmodified _RFPKELKIEL_ 0 0 0 L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|27|3|sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|27|3|sense L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|27|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 636.887355 1271.76016 0.49808 0.00031722 1.4629 0.0009317 1.961 0.0012489 636.8879523763173 108.53 0.042145 112.2 112.18 112.22 3.6746 -0.057977 0.0010907 NaN 14.405 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 6513300 35057 15339 22390 22401 0.13514797908010223 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.321533203125 2 540.321651 1078.62875 -0.084304 -4.5551E-05 -0.10827 -5.8501E-05 -0.19257 -0.00010405 540.3215530709197 21.528 0.096609 21.528 21.496 21.592 0 22 10 3 0 0 0 0.48846 1 2420 2420 1.8442 1.0506 1 114700 35058 2668 22391 22402 40214 40214 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3214721679688 2 540.321651 1078.62875 -0.079441 -4.2923E-05 -0.37014 -0.0002 -0.44959 -0.00024292 540.3213726655628 21.769 0.13411 21.769 21.738 21.872 0 17 14 2 0 0 0 0.48846 1 2486 2486 1.8442 1.1539 1 136270 35059 2668 22391 22402 40215 40215 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 -0.070333 -3.8002E-05 0.13435 7.2591E-05 0.064014 3.4588E-05 540.3215899092376 22.156 0.065363 22.156 22.144 22.209 0 14 6 3 0 0 0 0.48846 1 2592 2592 1.8442 1.1539 1 228810 35060 2668 22391 22402 40216 40216 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3214721679688 2 540.321651 1078.62875 -0.051135 -2.7629E-05 0.27489 0.00014853 0.22376 0.0001209 540.3214545589515 23.021 0.072018 23.021 23.005 23.077 0 8 3 3 0 0 0 0.48846 1 2828 2828 1.8442 0.36234 1 211070 35061 2668 22391 22402 40217 40217 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 -0.039953 -2.1588E-05 0.14603 7.8902E-05 0.10607 5.7314E-05 540.3217077187526 23.544 0.078461 23.544 23.509 23.587 0 9 6 3 0 0 0 0.48846 1 2973 2973 1.8442 0 1 129970 35062 2668 22391 22402 40218 40218 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3213500976562 2 540.321651 1078.62875 -0.034215 -1.8487E-05 0.025808 1.3945E-05 -0.0084076 -4.5428E-06 540.3215296278045 23.788 0.15189 23.788 23.689 23.84 0 33 16 4 0 0 0 0.48846 1 3017 3017 1.8442 0 1 140610 35063 2668 22391 22402 40219 40219 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.321533203125 2 540.321651 1078.62875 -0.02725 -1.4724E-05 -0.1263 -6.8242E-05 -0.15355 -8.2966E-05 540.3214205865021 24.084 0.15534 24.084 24.04 24.195 0 34 15 3 0 0 0 0.48846 1 3118 3118 1.8442 0 1 209780 35064 2668 22391 22402 40220 40220 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 -0.01301 -7.0297E-06 -0.10772 -5.8201E-05 -0.12073 -6.523E-05 540.3215259605148 24.765 0.21564 24.765 24.661 24.877 0 35 22 2 0 0 0 0.48846 1 3293 3293 1.8442 1.8442 1 252330 35065 2668 22391 22402 40221 40221 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3214111328125 2 540.321651 1078.62875 -0.00076075 -4.1105E-07 -0.12806 -6.9195E-05 -0.12882 -6.9606E-05 540.3215101864513 25.316 0.062407 25.316 25.265 25.327 0 9 5 3 0 0 0 0.48846 1 3455 3455 1.8442 1.1539 1 175080 35066 2668 22391 22402 40222 40222 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 0.01701 9.1911E-06 0.12219 6.602E-05 0.1392 7.5211E-05 540.3216355806229 26.13 0.11418 26.13 26.098 26.212 0 8 6 2 0 0 0 0.48846 1 3692 3692 1.8442 0 1 1472000 35067 2668 22391 22402 40223 40223 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.321533203125 2 540.321651 1078.62875 0.023454 1.2673E-05 0.13496 7.2921E-05 0.15841 8.5593E-05 540.3215704336443 26.402 0.0928 26.402 26.374 26.466 0 19 8 3 0 0 0 0.46869 1 3770 3770 3.9444 0.3479 1 270460 35068 2668 22391 22402 40224 40224 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 0.029136 1.5743E-05 0.029987 1.6203E-05 0.059123 3.1946E-05 540.3215848723895 26.669 0.2927 26.669 26.51 26.802 0 51 22 4 0 0 0 0.48846 2 3811 3811;3852 1.8442 1.0506 1 1145600 35069 2668 22391 22402 40225;40226 40225 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 0.037245 2.0124E-05 0.21811 0.00011785 0.25535 0.00013797 540.3216779660612 26.952 0.34513 26.952 26.932 27.277 0 53 28 3 0 0 0 0.48846 2 3936 3936;3971 1.8442 0 1 1352900 35070 2668 22391 22402 40227;40228 40227 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 0.049881 2.6952E-05 0.14608 7.8932E-05 0.19596 0.00010588 540.3216095151356 27.568 0.17454 27.568 27.537 27.711 0 27 11 3 0 0 0 0.48846 1 4115 4115 1.8442 1.0506 1 1543900 35071 2668 22391 22402 40229 40229 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3213500976562 2 540.321651 1078.62875 0.057666 3.1158E-05 0.21291 0.00011504 0.27058 0.0001462 540.321639803885 28.013 0.22031 28.013 27.84 28.06 0 37 15 3 0 0 0 0.48846 2 4202 4202;4239 1.8442 1.0506 1 331630 35072 2668 22391 22402 40230;40231 40230 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218383789062 2 540.321651 1078.62875 0.07421 4.0097E-05 0.15698 8.4817E-05 0.23119 0.00012491 540.3216544932005 28.737 0.23688 28.737 28.578 28.814 0 37 16 3 0 0 0 0.48846 1 4427 4427 1.8442 1.0506 1 470810 35073 2668 22391 22402 40232 40232 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3212280273438 2 540.321651 1078.62875 0.085278 4.6078E-05 -0.29125 -0.00015737 -0.20597 -0.00011129 540.3214162797914 29.198 0.051788 29.198 29.166 29.217 0 9 3 3 0 0 0 0.48846 1 4591 4591 1.8442 0.36234 1 282650 35074 2668 22391 22402 40233 40233 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 0.088117 4.7612E-05 0.13856 7.4867E-05 0.22668 0.00012248 540.3215425162573 29.322 0.19009 29.322 29.273 29.463 0 21 14 3 0 0 0 0.48846 1 4630 4630 1.8442 0 1 912310 35075 2668 22391 22402 40234 40234 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 0.10137 5.4771E-05 0.19154 0.00010349 0.2929 0.00015826 540.3215644454289 29.947 0.13971 29.947 29.834 29.974 0 22 12 3 0 0 0 0.48846 1 4796 4796 1.8442 1.0506 1 393720 35076 2668 22391 22402 40235 40235 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 0.10457 5.6502E-05 0.58743 0.0003174 0.692 0.0003739 540.3221256341355 30.038 0.13687 30.038 30.015 30.152 0 24 11 3 0 0 0 0.46869 1 4837 4837 3.9444 0.3479 1 389310 35077 2668 22391 22402 40236 40236 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.321651 1078.62875 0.12311 6.6518E-05 0.34189 0.00018473 0.465 0.00025125 540.3218461492222 30.911 0.046566 30.911 30.896 30.943 0 6 2 3 0 0 0 0.48846 1 5103 5103 1.8442 0 1 866330 35078 2668 22391 22402 40237 40237 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 0.12769 6.8996E-05 0.12105 6.5403E-05 0.24874 0.0001344 540.3218082663581 31.125 0.070774 31.125 31.07 31.141 0 11 5 3 0 0 0 0.48846 1 5160 5160 1.8442 1.0506 1 173260 35079 2668 22391 22402 40238 40238 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.321651 1078.62875 0.13006 7.0277E-05 0.25492 0.00013774 0.38499 0.00020802 540.3217794237639 31.19 0.15073 31.19 31.175 31.326 0 18 9 3 0 0 0 0.46869 1 5200 5200 3.9444 1.6417 1 527750 35080 2668 22391 22402 40239 40239 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 0.13794 7.4532E-05 0.3892 0.00021029 0.52714 0.00028483 540.3218049853971 31.596 0.12193 31.596 31.51 31.632 0 16 7 3 0 0 0 0.48846 1 5286 5286 1.8442 1.1539 1 1001900 35081 2668 22391 22402 40240 40240 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 0.1826 9.8663E-05 0.34927 0.00018872 0.53187 0.00028738 540.32177705477 33.608 0.08493 33.608 33.595 33.68 0 8 5 2 0 0 0 0.48846 1 5920 5920 1.8442 1.0506 1 468140 35082 2668 22391 22402 40241 40241 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.322509765625 2 540.321651 1078.62875 0.36368 0.00019651 0.41808 0.0002259 0.78176 0.0004224 540.3218095047426 108.9 0.69935 108.9 108.7 109.4 0 118 51 3 0 0 0 0.42249 1 26812 26812 6.7232 0 1 52292000 35083 2668 22391 22402 40242 40242 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3219604492188 2 540.321651 1078.62875 0.36405 0.0001967 0.34558 0.00018673 0.70963 0.00038343 540.3217795616581 109.46 0.28259 109.46 109.35 109.63 0 72 23 4 0 0 0 0.42249 1 26928 26928 6.7232 0 1 12485000 35084 2668 22391 22402 40243 40243 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 0.36409 0.00019673 0.15632 8.4463E-05 0.52041 0.00028119 540.3216679382705 109.7 0.53139 109.7 109.58 110.11 0 133 43 4 0 0 0 0.42249 3 26968 26968;27012;27065 6.7232 1.9672 1 12631000 35085 2668 22391 22402 40244;40245;40246 40244 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3219604492188 2 540.321651 1078.62875 0.36403 0.00019669 0.168 9.0772E-05 0.53203 0.00028747 540.3216700644725 110.2 0.28419 110.2 110.11 110.4 0 70 26 4 0 0 0 0.42249 1 27135 27135 6.7232 0.51738 1 5339900 35086 2668 22391 22402 40247 40247 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-SECPEP UPN46_class_I_Rep_3 1 540.6753540039062 2 540.321651 1078.62875 -0.01787 -9.6554E-06 0.044796 2.4204E-05 0.026926 1.4549E-05 540.3215116373782 24.481 0.32246 24.481 24.373 24.695 0 56 33 3 0 0 0 0.12321 1 3214 3214 3.9444 1.6417 1 207320 35087 2668 22391 22402 40248 40248 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN47_class_I_Rep_1 2 540.3218383789062 2 540.321651 1078.62875 0.52194 0.00028201 0.12977 7.0119E-05 0.65171 0.00035213 540.3216345939417 108.73 1.8029 112.37 112.19 113.99 3.6355 383 216 2 0 0 0 0.42249 3 26757 26757;26964;27004 6.7232 0 1 143550000 35088 2668 22391 22402 40249;40250;40251 40249 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN47_class_I_Rep_2 3 540.3218994140625 2 540.321651 1078.62875 0.5902 0.0003189 0.43499 0.00023503 1.0252 0.00055393 540.3216914769645 109.34 1.0724 112.87 112.7 113.77 3.5307 309 150 3 0 0 0 0.42249 1 26643 26643 6.7232 0 1 14527000 35089 2668 22391 22402 40252 40252 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN47_class_I_Rep_3 4 540.3216552734375 2 540.321651 1078.62875 0.48617 0.00026269 0.4198 0.00022683 0.90597 0.00048951 540.3216798416476 108.75 0.62151 112.28 112.08 112.7 3.5382 253 70 4 0 0 0 0.42249 2 26651 26651;26775 6.7232 0 1 130600000 35090 2668 22391 22402 40253;40254 40253 0.09258032330808419 RFPKPPQPI 9 Unmodified _RFPKPPQPI_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS UPN48_class_I_Rep_1 5 540.3218994140625 2 540.321651 1078.62875 0.37828 0.00020439 0.17806 9.6212E-05 0.55635 0.00030061 540.3215793099968 108.69 1.5435 112.33 112.18 113.73 3.6321 399 197 4 0 0 0 0.42249 2 26398 26398;26451 6.7232 0 1 80063000 35091 2668 22391 22402 40255;40256 40255 0.09258032330808419 RFPLAVHVP 9 Unmodified _RFPLAVHVP_ 0 0 0 REV__LTR13_dup285|chr12:132001049-132002023:-|1.739832875467315|0.1572089378799124|3.47|151.0|19|2|sense REV__LTR13_dup285|chr12:132001049-132002023:-|1.739832875467315|0.1572089378799124|3.47|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 518.3084106445312 2 518.308544 1034.60253 0.36013 0.00018666 -0.25156 -0.00013039 0.10857 5.6273E-05 518.3083383525754 108.76 0.66879 112.3 112.09 112.76 3.5382 143 77 2 0 0 0 0.40174 1 26683 26683 7.9102 0 1 165330000 + 35092 30833 22392 22403 40257 40257 0.08661763159329894 RFPLAVHVP 9 Unmodified _RFPLAVHVP_ 0 0 0 REV__LTR13_dup285|chr12:132001049-132002023:-|1.739832875467315|0.1572089378799124|3.47|151.0|19|2|sense REV__LTR13_dup285|chr12:132001049-132002023:-|1.739832875467315|0.1572089378799124|3.47|151.0|19|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 518.3084716796875 2 518.308544 1034.60253 0.35851 0.00018582 0.58189 0.0003016 0.9404 0.00048742 518.3083265580332 108.73 1.6636 112.41 112.29 113.95 3.6746 457 209 4 0 0 0 0.40174 2 25813 25813;25908 7.9102 0 1 133200000 + 35093 30833 22392 22403 40258;40259 40258 0.08661763159329894 RFPLHEVIL 9 Unmodified _RFPLHEVIL_ 0 0 0 ENST00000377387.5_1_11:64532125-64532308:-|nuORF ENST00000377387.5_1_11:64532125-64532308:-|nuORF ENST00000377387.5_1_11:64532125-64532308:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.16663 9.3702E-05 0.13693 7.7E-05 0.30356 0.0001707 562.3345530736553 29.198 0.098534 29.198 29.166 29.264 0 12 7 3 0 0 0 0.48846 1 4594 4594 1.8442 0 1 267300 35094 6458 22393 22404 40260 40260 0.09854301502286944 RFPLHEVIL 9 Unmodified _RFPLHEVIL_ 0 0 0 ENST00000377387.5_1_11:64532125-64532308:-|nuORF ENST00000377387.5_1_11:64532125-64532308:-|nuORF ENST00000377387.5_1_11:64532125-64532308:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.3345336914062 2 562.334759 1122.65496 0.63501 0.00035709 0.1637 9.2057E-05 0.79871 0.00044914 562.3343733601961 109.34 0.88783 112.87 112.69 113.58 3.5307 299 123 3 0 0 0 0.46434 1 26742 26742 4.3292 0 1 10055000 35095 6458 22393 22404 40261 40261 0.09854301502286944 RFPLLISHP 9 Unmodified _RFPLLISHP_ 0 0 0 MLT1A0_dup4522|chr3:172142754-172143125:-|1.0729046775157|0.014929868785075|6.17|150.0|15|3|sense MLT1A0_dup4522|chr3:172142754-172143125:-|1.0729046775157|0.014929868785075|6.17|150.0|15|3|sense MLT1A0_dup4522|chr3:172142754-172143125:-|1.0729046775157|0.014929868785075|6.17|150.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.322021484375 2 540.321651 1078.62875 0.5902 0.0003189 0.43499 0.00023503 1.0252 0.00055393 540.3216914769645 109.34 1.0724 112.87 112.7 113.77 3.5307 309 150 3 0 0 0 0.41259 1 26680 26680 7.2892 0.56607 1 14527000 35096 16256 22394 22405 40262 40262 0.09258032330808419 RFPLLISHP 9 Unmodified _RFPLLISHP_ 0 0 0 MLT1A0_dup4522|chr3:172142754-172143125:-|1.0729046775157|0.014929868785075|6.17|150.0|15|3|sense MLT1A0_dup4522|chr3:172142754-172143125:-|1.0729046775157|0.014929868785075|6.17|150.0|15|3|sense MLT1A0_dup4522|chr3:172142754-172143125:-|1.0729046775157|0.014929868785075|6.17|150.0|15|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 540.321651 1078.62875 0.5461 0.00029507 0.31304 0.00016914 0.85915 0.00046422 540.3217202165362 109.39 0.97392 113.07 113.02 113.99 3.6751 0.10136 -9.0699E-05 NaN 7.2892 193 134 2 NaN NaN NaN NaN 0 NaN NaN 0 3127400 35097 16256 22394 22405 0.09258032330808419 RFPNTIKV 8 Unmodified _RFPNTIKV_ 0 0 0 L1M4a1_dup1067|chr6:83028679-83030153:-|1.3462786593659195|0.0761515107460156|4.14|151.0|11|1|sense L1M4a1_dup1067|chr6:83028679-83030153:-|1.3462786593659195|0.0761515107460156|4.14|151.0|11|1|sense L1M4a1_dup1067|chr6:83028679-83030153:-|1.3462786593659195|0.0761515107460156|4.14|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7917175292969 2 487.792727 973.5709 0.24907 0.00012149 -1.1788 -0.00057499 -0.92968 -0.00045349 487.79185571128846 74.755 0.77141 78.345 77.885 78.656 3.59 135 85 2 0 0 0 0.82752 1 17610 17610 3.9444 1.0552 1 213500 35098 8936 22395 22406 40263 40263 0.08305770405377189 RFPRLHSAVI 10 Unmodified _RFPRLHSAVI_ 0 0 0 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 MULTI-MSMS UPN47_class_I_Rep_2 3 598.3583984375 2 598.356557 1194.69856 0.51636 0.00030897 1.787 0.0010693 2.3034 0.0013782 598.3573745660327 53.138 0.45111 56.465 56.228 56.679 3.3266 45 25 2 0 0 0 0.56033 1 11950 11950 3.5965 0.60125 1 67981 35099 5287 22396 22407 40264 40264 0.10899910999432905 RFPSSAPRPA 10 Unmodified _RFPSSAPRPA_ 0 0 0 REV__SVA_D_dup1071|chr14:63521973-63523727:+|1.1112800411118051|0.1215343870269466|3.19|151.0|7|1|sense REV__SVA_D_dup1071|chr14:63521973-63523727:+|1.1112800411118051|0.1215343870269466|3.19|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 543.29736328125 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 33.938 1 37.599 37.099 38.099 3.6607 0 0 0 0.53105 1 5413 5413 1.3295 0.63916 1 + 35100 32192 22397 22408 40265 40265 0.03887083285940207 RFPSTCRK 8 Unmodified _RFPSTCRK_ 0 0 0 nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2 nc|ENSG00000128881|Q6IQ55-3|TTBK2 nc|ENSG00000128881|Q6IQ55-3|TTBK2 MSMS UPN46_class_I_Rep_3 1 497.7282409667969 2 497.766186 993.517819 NaN NaN NaN NaN NaN NaN NaN 116.52 1 116.52 116.02 117.02 0 0 0 0 0.40643 1 28847 28847 2.0598 0.40713 1 35101 2606 22398 22409 40266 40266 0.020800693510636847 RFQKQWIKKV 10 Unmodified _RFQKQWIKKV_ 0 0 0 REV__nc|ENSG00000144451|Q8N0X2-2|SPAG16 REV__nc|ENSG00000144451|Q8N0X2-2|SPAG16 MSMS UPN48_class_I_Rep_1 5 454.2384948730469 3 454.278585 1359.81392 NaN NaN NaN NaN NaN NaN NaN 48.447 1 51.971 51.471 52.471 3.5239 0 0 0 0.53105 1 9685 9685 0.15932 0.01943 1 + 35102 32003 22399 22410 40267 40267 0.14841015130377855 RFQNEVLA 8 Unmodified _RFQNEVLA_ 0 0 0 ENST00000326685.11_1_5:148638855-148639278:+|nuORF ENST00000326685.11_1_5:148638855-148639278:+|nuORF ENST00000326685.11_1_5:148638855-148639278:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 488.7644958496094 2 488.764166 975.513779 0.23077 0.00011279 -0.034766 -1.6993E-05 0.196 9.5798E-05 488.7637422775269 65.911 0.041 65.911 65.892 65.933 0 5 4 2 0 0 0 0.82752 1 14927 14927 5.7604 1.0044 1 42738 35103 6170 22400 22411 40268 40268 0.02504303129001073 RFRAPLTV 8 Unmodified _RFRAPLTV_ 0 0 0 L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|171|3|anti-sense L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|171|3|anti-sense L1PB1_dup12602|chr20:37966164-37968894:-|2.360988644981815|0.0788922436369407|4.9|151.0|171|3|anti-sense MSMS UPN47_class_I_Rep_1 2 480.29205322265625 2 480.292894 958.571235 NaN NaN NaN NaN NaN NaN NaN 82.728 1 86.267 85.767 86.767 3.5386 0 0 0 0.37681 1 20676 20676 15.847 0.5987 1 35104 15041 22401 22412 40269 40269 0.09029190125215791 RFRFTRLSI 9 Unmodified _RFRFTRLSI_ 0 0 0 REV__L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|162|3|anti-sense REV__L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|162|3|anti-sense MSMS UPN47_class_I_Rep_1 2 598.35791015625 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 52.694 1 56.252 55.752 56.752 3.5585 0 0 0 0.38639 1 11746 11746 3.9444 0.3479 1 + 35105 28129 22402 22413 40270 40270 0.10899910999432905 RFRIPYFM 8 Unmodified _RFRIPYFM_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MSMS UPN48_class_I_Rep_2 6 565.7312622070312 2 565.302404 1128.59026 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.55 121.05 122.05 3.6627 0 0 0 0.40738 1 28261 28261 0.79363 0 1 35106 4456 22403 22414 40271 40271 0.03110403424625474 RFRMHNRL 8 Unmodified _RFRMHNRL_ 0 0 0 REV__ENST00000527755.5_1_11:119003111-119005205:+|nuORF REV__ENST00000527755.5_1_11:119003111-119005205:+|nuORF MSMS UPN46_class_I_Rep_3 1 565.0107421875 2 565.311626 1128.6087 NaN NaN NaN NaN NaN NaN NaN 90.067 1 90.067 89.567 90.567 0 0 0 0 0.40746 1 21703 21703 0.69038 0 1 + 35107 20441 22404 22415 40272 40272 0.04953958119199342 RFRMKGRR 8 Unmodified _RFRMKGRR_ 0 0 0 REV__nc|ENSG00000101977|P10911-6|MCF2 REV__nc|ENSG00000101977|P10911-6|MCF2 MSMS UPN46_class_I_Rep_3 1 553.829833984375 2 553.827443 1105.64033 NaN NaN NaN NaN NaN NaN NaN 83.526 1 83.526 83.026 84.026 0 0 0 0 0.40746 1 19845 19845 0.69038 0.088878 1 + 35108 31951 22405 22416 40273 40273 0.09173950873150716 RFRNMPFY 8 Unmodified _RFRNMPFY_ 0 0 0 REV__L1MC4_dup15345|chr10:45757941-45758597:-|1.63760711014945|0.3341249065990099|2.29|151.0|26|1|anti-sense REV__L1MC4_dup15345|chr10:45757941-45758597:-|1.63760711014945|0.3341249065990099|2.29|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_2 6 565.781494140625 2 565.781836 1129.54912 NaN NaN NaN NaN NaN NaN NaN 20.649 1 24.297 23.797 24.797 3.648 0 0 0 0.40738 1 1814 1814 0.79363 0.10326 1 + 35109 26819 22406 22417 40274 40274 -0.010473576148342545 RFRNMPFY 8 Unmodified _RFRNMPFY_ 0 0 0 REV__L1MC4_dup15345|chr10:45757941-45758597:-|1.63760711014945|0.3341249065990099|2.29|151.0|26|1|anti-sense REV__L1MC4_dup15345|chr10:45757941-45758597:-|1.63760711014945|0.3341249065990099|2.29|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_3 7 565.782470703125 2 565.781836 1129.54912 NaN NaN NaN NaN NaN NaN NaN 21.167 1 24.834 24.334 25.334 3.6667 0 0 0 0.40738 1 1940 1940 0.79363 0 1 + 35110 26819 22406 22417 40275 40275 -0.010473576148342545 RFRPKKMP 8 Unmodified _RFRPKKMP_ 0 0 0 REV__ENST00000590607.1_1_19:29704218-29706237:+|nuORF REV__ENST00000590607.1_1_19:29704218-29706237:+|nuORF MSMS UPN47_class_I_Rep_3 4 530.3154296875 2 530.315846 1058.61714 NaN NaN NaN NaN NaN NaN NaN 34.94 1 38.204 37.704 38.704 3.2639 0 0 0 0.40746 1 6411 6411 0.69038 0 1 + 35111 23163 22407 22418 40276 40276 0.0901751203580261 RFRQGWHCF 9 Unmodified _RFRQGWHCF_ 0 0 0 REV__ENST00000441868.2_1_6:135219409-135219799:+|nuORF REV__ENST00000441868.2_1_6:135219409-135219799:+|nuORF MSMS UPN48_class_I_Rep_1 5 618.7955932617188 2 618.795809 1235.57707 NaN NaN NaN NaN NaN NaN NaN 114.55 1 118.18 117.68 118.68 3.6301 0 0 0 0.40038 1 27850 27850 0.6015 0 1 + 35112 19954 22408 22419 40277 40277 -0.031300346347507 RFRRVVAL 8 Unmodified _RFRRVVAL_ 0 0 0 REV__ENSG00000235194|ENST00000452015|PPP1R3E REV__ENSG00000235194|ENST00000452015|PPP1R3E MSMS UPN47_class_I_Rep_1 2 508.82843017578125 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 74.439 1 77.832 77.332 78.332 3.3937 0 0 0 0.40581 1 18321 18321 2.8892 0 1 + 35113 21306 22409 22420 40278 40278 0.1331227414480054 RFRRVVAL 8 Unmodified _RFRRVVAL_ 0 0 0 REV__ENSG00000235194|ENST00000452015|PPP1R3E REV__ENSG00000235194|ENST00000452015|PPP1R3E MSMS UPN47_class_I_Rep_2 3 508.8277282714844 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 74.485 1 77.798 77.298 78.298 3.3127 0 0 0 0.40738 1 18357 18357 0.79363 0 1 + 35114 21306 22409 22420 40279 40279 0.1331227414480054 RFRRVVAL 8 Unmodified _RFRRVVAL_ 0 0 0 REV__ENSG00000235194|ENST00000452015|PPP1R3E REV__ENSG00000235194|ENST00000452015|PPP1R3E MSMS UPN47_class_I_Rep_2 3 508.82855224609375 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 74.69 1 78.003 77.503 78.503 3.3127 0 0 0 0.40581 1 18413 18413 2.8892 0 1 + 35115 21306 22409 22420 40280 40280 0.1331227414480054 RFRRVVAL 8 Unmodified _RFRRVVAL_ 0 0 0 REV__ENSG00000235194|ENST00000452015|PPP1R3E REV__ENSG00000235194|ENST00000452015|PPP1R3E MSMS UPN47_class_I_Rep_2 3 508.82745361328125 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 75.144 1 78.456 77.956 78.956 3.3127 0 0 0 0.40581 1 18541 18541 2.8892 0 1 + 35116 21306 22409 22420 40281 40281 0.1331227414480054 RFRSRNAI 8 Unmodified _RFRSRNAI_ 0 0 0 REV__L1MEg_dup112|chr1:32792133-32792609:+|1.746085327454142|0.206357229587762|3.08|151.0|10|2|sense REV__L1MEg_dup112|chr1:32792133-32792609:+|1.746085327454142|0.206357229587762|3.08|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.29669189453125 2 510.296499 1018.57845 0.32898 0.00016788 1.8943 0.00096665 2.2233 0.0011345 510.2974864029018 67.943 0.19718 71.452 71.366 71.564 3.5083 17 13 2 0 0 0 0.82752 1 15645 15645 10.824 0.75 1 83134 + 35117 28715 22410 22421 40282 40282 0.06989922725642828 RFRVKQAA 8 Unmodified _RFRVKQAA_ 0 0 0 nc|ENSG00000184083|Q9NX05-2|FAM120C nc|ENSG00000184083|Q9NX05-2|FAM120C nc|ENSG00000184083|Q9NX05-2|FAM120C MSMS UPN46_class_I_Rep_3 1 487.9784240722656 2 488.295968 974.577383 NaN NaN NaN NaN NaN NaN NaN 65.041 1 65.041 64.541 65.541 0 0 0 0 0.40746 1 14682 14682 0.69038 0 1 35118 16774 22411 22422 40283 40283 0.08907708356753119 RFSCLRLPG 9 Unmodified _RFSCLRLPG_ 0 0 0 nc|ENSG00000292357|P15509-7|CSF2RA nc|ENSG00000292357|P15509-7|CSF2RA nc|ENSG00000292357|P15509-7|CSF2RA MSMS UPN47_class_I_Rep_1 2 524.7989501953125 2 524.789661 1047.56477 NaN NaN NaN NaN NaN NaN NaN 35.231 1 38.907 38.407 39.407 3.6762 0 0 0 0.38784 1 6436 6436 3.5965 0.31518 1 35119 16859 22412 22423 40284 40284 0.042889289022014054 RFSPPLRLF 9 Unmodified _RFSPPLRLF_ 0 0 0 ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 567.2802734375 2 566.834926 1131.6553 0.55955 0.00031717 -0.41795 -0.00023691 0.14159 8.0261E-05 566.8346813993345 62.624 1.0442 66.087 65.607 66.652 3.4625 111 71 2 0 0 0 0.098763 1 14089 14089 16.566 4.3252 1 263260 35120 6396 22413 22424 40285 40285 0.09473721222116183 RFSPPLRLF 9 Unmodified _RFSPPLRLF_ 0 0 0 ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 567.279296875 2 566.834926 1131.6553 0.45629 0.00025864 -0.23757 -0.00013466 0.21872 0.00012398 566.8347665251932 62.092 0.93903 65.603 65.361 66.3 3.5104 130 74 2 0 0 0 0.11446 1 13839 13839 14.405 7.6822 1 148500 35121 6396 22413 22424 40286 40286 0.09473721222116183 RFTFPFCPGE 10 Unmodified _RFTFPFCPGE_ 0 0 0 REV__THE1D_dup550|chr1:174869219-174869604:+|1.4182552011328855|0.0114393105934969|6.95|151.0|13|3|sense REV__THE1D_dup550|chr1:174869219-174869604:+|1.4182552011328855|0.0114393105934969|6.95|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 600.7789916992188 2 600.778959 1199.54336 NaN NaN NaN NaN NaN NaN NaN 19.73 1 23.127 22.627 23.627 3.3963 0 0 0 0.53105 1 1917 1917 1.4819 0 1 + 35122 32302 22414 22425 40287 40287 -0.0484250091717513 RFTHKYFIL 9 Unmodified _RFTHKYFIL_ 0 0 0 L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|58|1|anti-sense L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|58|1|anti-sense L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|58|1|anti-sense MSMS UPN46_class_I_Rep_3 1 612.84814453125 2 612.848033 1223.68151 NaN NaN NaN NaN NaN NaN NaN 66.358 1 66.358 65.858 66.858 0 0 0 0 0.4007 1 15052 15052 0.52476 0 1 35123 12518 22415 22426 40288 40288 0.07861990393598717 RFTKMRKTK 9 Unmodified _RFTKMRKTK_ 0 0 0 REV__Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|71|3|sense REV__Tigger2_dup1436|chr8:56972110-56974312:+|1.3782458670386726|0.1517698642402318|3.18|150.0|71|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 598.8597412109375 2 598.358242 1194.70193 0.50181 0.00030026 -0.95431 -0.00057102 -0.4525 -0.00027076 598.357474492074 52.848 0.65401 56.043 55.816 56.47 3.1948 71 45 2 0 0 0 0.47197 2 11882 11882;11980 3.5965 0.60125 1 152480 + 35124 32635 22416 22427 40289;40290 40289 0.11236837781757458 RFTPHSVNK 9 Unmodified _RFTPHSVNK_ 0 0 0 L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|7|1|sense L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|7|1|sense L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 543.2996215820312 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 30.859 1 34.401 33.901 34.901 3.542 0 0 0 0.39428 1 4489 4489 2.0598 0 1 35125 14830 22417 22428 40291 40291 0.03887083285940207 RFVFPYFDL 9 Unmodified _RFVFPYFDL_ 0 0 0 nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5 nc|ENSG00000069122|Q8IZF2-3|ADGRF5 nc|ENSG00000069122|Q8IZF2-3|ADGRF5 MSMS UPN47_class_I_Rep_3 4 401.8777160644531 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 16.879 1 20.241 19.741 20.741 3.3619 0 0 0 0.4007 1 1132 1132 0.23584 0 1 35126 1055 22418 22429 40292 40292 0.019229063740567653 RFVINVLMK 9 Unmodified _RFVINVLMK_ 0 0 0 REV__HAL1_dup12231|chr9:2801151-2801825:+|1.182245219742023|0.1496583455069064|2.98|151.0|29|1|anti-sense REV__HAL1_dup12231|chr9:2801151-2801825:+|1.182245219742023|0.1496583455069064|2.98|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 560.339599609375 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 79.563 1 83.196 82.696 83.696 3.6331 0 0 0 0.39428 1 18909 18909 2.0598 0 1 + 35127 23342 22419 22430 40293 40293 0.1088353214727249 RFVKKGSF 8 Unmodified _RFVKKGSF_ 0 0 0 REV__HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|30|3|sense REV__HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.78778076171875 2 484.787444 967.560336 0.16711 8.1011E-05 0.66825 0.00032396 0.83535 0.00040497 484.7877810057361 38.398 1.4414 41.903 41.266 42.707 3.5052 276 129 3 0 0 0 0.82752 1 6792 6792 5.7604 0 1 318400 + 35128 23418 22420 22431 40294 40294 0.07525787750955715 RFVKPPWP 8 Unmodified _RFVKPPWP_ 0 0 0 REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense REV__AluJb_dup79128|chr11:76036267-76036554:+|1.1406133342313072|0.0088619795424789|7.01|151.0|27|3|anti-sense MSMS UPN47_class_I_Rep_1 2 513.7296142578125 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 32.473 1 36.186 35.686 36.686 3.7131 0 0 0 0.40738 1 5593 5593 0.79363 0 1 + 35129 16965 22421 22432 40295 40295 0.0693037813061892 RFVNVVPTF 9 Unmodified _RFVNVVPTF_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN48_class_I_Rep_1 5 539.8059692382812 2 539.805834 1077.59712 0.4857 0.00026218 -0.27442 -0.00014813 0.21128 0.00011405 539.8057066418473 64.639 1.1906 68.093 67.674 68.865 3.4541 282 93 5 0 0 0 0.1249 5 14684 14561;14605;14646;14684;14718 29.082 7.5446 1 1111800 35130 3553 22422 22433 40296;40297;40298;40299;40300 40299 0.06142039576843672 RFVNVVPTF 9 Unmodified _RFVNVVPTF_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN48_class_I_Rep_2 6 539.8059692382812 2 539.805834 1077.59712 0.50817 0.00027431 -0.46812 -0.00025269 0.04005 2.1619E-05 539.8056834711048 64.416 1.0288 67.891 67.523 68.552 3.4743 255 76 5 0 0 0 0.10568 7 14572 14486;14496;14536;14572;14613;14651;14689 32.786 11.249 1 1007000 35131 3553 22422 22433 40301;40302;40303;40304;40305;40306;40307 40304 0.06142039576843672 RFVNVVPTF 9 Unmodified _RFVNVVPTF_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN48_class_I_Rep_3 7 539.8056640625 2 539.805834 1077.59712 0.57606 0.00031096 -0.49011 -0.00026456 0.08595 4.6396E-05 539.805623260295 64.383 1.0279 67.891 67.419 68.447 3.5083 277 89 5 0 0 0 0.11683 7 14420 14360;14382;14420;14458;14496;14531;14566 30.637 3.0077 1 1108200 35132 3553 22422 22433 40308;40309;40310;40311;40312;40313;40314 40310 0.06142039576843672 RFVRRKRKVI 10 Unmodified _RFVRRKRKVI_ 0 0 0 HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense;HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|59|2|anti-sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|40|1|anti-sense;HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|334|3|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense MSMS UPN47_class_I_Rep_1 2 453.3056640625 3 453.305357 1356.89424 NaN NaN NaN NaN NaN NaN NaN 118.64 1 122.25 121.75 122.75 3.6036 0 0 0 0.53105 1 29449 29449 0 0 1 35133 8259 22423 22434 40315 40315 0.23006921244109435 RFVRRKRKVI 10 Unmodified _RFVRRKRKVI_ 0 0 0 HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense;HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|59|2|anti-sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|40|1|anti-sense;HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|334|3|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.30560302734375 3 453.305357 1356.89424 NaN NaN NaN NaN NaN NaN NaN 116.59 1 120.09 119.59 120.59 3.4965 0 0 0 0.53105 1 28470 28470 0 0 1 35134 8259 22423 22434 40316 40316 0.23006921244109435 RFVRRKRKVI 10 Unmodified _RFVRRKRKVI_ 0 0 0 HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense;HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|59|2|anti-sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|40|1|anti-sense;HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|334|3|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.30535888671875 3 453.305357 1356.89424 NaN NaN NaN NaN NaN NaN NaN 119.02 1 122.5 122 123 3.4793 0 0 0 0.53105 1 29145 29145 0 0 1 35135 8259 22423 22434 40317 40317 0.23006921244109435 RFVRRKRKVI 10 Unmodified _RFVRRKRKVI_ 0 0 0 HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense;HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|59|2|anti-sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|40|1|anti-sense;HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|334|3|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.30511474609375 3 453.305357 1356.89424 NaN NaN NaN NaN NaN NaN NaN 116.42 1 119.88 119.38 120.38 3.462 0 0 0 0.53105 1 28647 28647 0 0 1 35136 8259 22423 22434 40318 40318 0.23006921244109435 RFVRRKRKVI 10 Unmodified _RFVRRKRKVI_ 0 0 0 HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense;HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|59|2|anti-sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|40|1|anti-sense;HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|334|3|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.30572509765625 3 453.305357 1356.89424 NaN NaN NaN NaN NaN NaN NaN 118.62 1 122.05 121.55 122.55 3.4238 0 0 0 0.53105 1 29262 29262 0 0 1 35137 8259 22423 22434 40319 40319 0.23006921244109435 RFVRRKRKVI 10 Unmodified _RFVRRKRKVI_ 0 0 0 HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense;HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|59|2|anti-sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|40|1|anti-sense;HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|334|3|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|59|2|anti-sense MSMS UPN48_class_I_Rep_2 6 453.3059387207031 3 453.305357 1356.89424 NaN NaN NaN NaN NaN NaN NaN 112.25 1 115.92 115.42 116.42 3.6648 0 0 0 0.53105 1 26734 26734 0.15932 0.064481 1 35138 8259 22423 22434 40320 40320 0.23006921244109435 RFVSAPIY 8 Unmodified _RFVSAPIY_ 0 0 0 LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|26|3|sense;LTR12C_dup850|chr5:10374977-10376523:+|2.5035124376535647|0.1876560272518037|3.74|151.0|6|1|sense LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|26|3|sense LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|26|3|sense MSMS UPN48_class_I_Rep_1 5 476.7641296386719 2 476.766178 951.517802 NaN NaN NaN NaN NaN NaN NaN 40.853 1 44.359 43.859 44.859 3.506 0 0 0 0.40604 1 7377 7377 2.5775 0.27475 1 35139 15553 22424 22435 40321 40321 0.040103926226947806 RFVVQKGQ 8 Unmodified _RFVVQKGQ_ 0 0 0 REV__ENSG00000116273|ENST00000377648|PHF13 REV__ENSG00000116273|ENST00000377648|PHF13 MSMS UPN46_class_I_Rep_3 1 481.2828369140625 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 97.632 1 97.632 97.132 98.132 0 0 0 0 0.40746 1 23761 23761 0.69038 0 1 + 35140 18601 22425 22436 40322 40322 0.06864599745574651 RFVVTRCV 8 Unmodified _RFVVTRCV_ 0 0 0 REV__L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|355|3|anti-sense REV__L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|355|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.2806091308594 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 34.298 1 37.812 37.312 38.312 3.5144 0 0 0 0.40659 1 5465 5465 1.8442 0.19162 1 + 35141 29530 22426 22437 40323 40323 0.05317543873502473 RFWLFMNKT 9 Unmodified _RFWLFMNKT_ 0 0 0 L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|115|2|anti-sense L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|115|2|anti-sense L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_3 4 621.827880859375 2 621.826243 1241.63793 NaN NaN NaN NaN NaN NaN NaN 45.376 1 48.62 48.12 49.12 3.2441 0 0 0 0.39598 1 9608 9608 1.6526 0 1 35142 11922 22427 22438 40324 40324 0.02678057624802932 RFWNIYIIAEY 11 Unmodified _RFWNIYIIAEY_ 0 0 0 Tigger4a_dup866|chr4:55411251-55411434:+|1.6212513230393373|0.2369105563734665|2.77|151.0|8|1|anti-sense Tigger4a_dup866|chr4:55411251-55411434:+|1.6212513230393373|0.2369105563734665|2.77|151.0|8|1|anti-sense Tigger4a_dup866|chr4:55411251-55411434:+|1.6212513230393373|0.2369105563734665|2.77|151.0|8|1|anti-sense MSMS UPN47_class_I_Rep_3 4 496.595458984375 3 496.594238 1486.76089 NaN NaN NaN NaN NaN NaN NaN 23.675 1 27.026 26.526 27.526 3.3509 0 0 0 0.38417 1 3052 3052 0.50596 0.34663 1 35143 33437 22428 22439 40325 40325 0.03697592557114149 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN46_class_I_Rep_3 1 554.6612548828125 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 103.2 1 103.2 102.7 103.7 0 0 0 0 0.38417 1 25184 25184 0 0 1 + 35144 21493 22429 22440 40326 40326 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.995361328125 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 100.92 1 104.72 104.22 105.22 3.7942 0 0 0 0.38417 1 24924 24924 0 0 1 + 35145 21493 22429 22440 40327 40327 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.66015625 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.09 1 104.89 104.39 105.39 3.7942 0 0 0 0.38417 1 24955 24955 0 0 1 + 35146 21493 22429 22440 40328 40328 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN47_class_I_Rep_2 3 554.9949951171875 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.6 1 105.12 104.62 105.62 3.5151 0 0 0 0.38417 1 24781 24781 0 0 1 + 35147 21493 22429 22440 40329 40329 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN47_class_I_Rep_3 4 555.330078125 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.16 1 104.63 104.13 105.13 3.4671 0 0 0 0.38417 1 24952 24952 0 0 1 + 35148 21493 22429 22440 40330 40330 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.9946899414062 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 99.121 1 102.73 102.23 103.23 3.6065 0 0 0 0.38417 1 23928 23928 0 0 1 + 35149 21493 22429 22440 40331 40331 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.995361328125 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 100.2 1 103.81 103.31 104.31 3.6084 0 0 0 0.38417 1 24200 24200 0 0 1 + 35150 21493 22429 22440 40332 40332 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.9951782226562 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.53 1 105.14 104.64 105.64 3.612 0 0 0 0.38417 1 24508 24508 0 0 1 + 35151 21493 22429 22440 40333 40333 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.9949951171875 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.65 1 105.26 104.76 105.76 3.612 0 0 0 0.38417 1 24534 24534 0 0 1 + 35152 21493 22429 22440 40334 40334 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.9951782226562 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.83 1 105.44 104.94 105.94 3.612 0 0 0 0.38417 1 24571 24571 0 0 1 + 35153 21493 22429 22440 40335 40335 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.9948120117188 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 100.01 1 103.76 103.26 104.26 3.7575 0 0 0 0.38417 1 23756 23756 0 0 1 + 35154 21493 22429 22440 40336 40336 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.9951171875 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 100.31 1 104.06 103.56 104.56 3.7478 0 0 0 0.38417 1 23825 23825 0 0 1 + 35155 21493 22429 22440 40337 40337 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.9957885742188 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 100.43 1 104.17 103.67 104.67 3.7417 0 0 0 0.38417 1 23851 23851 0 0 1 + 35156 21493 22429 22440 40338 40338 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.9954223632812 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 100.98 1 104.72 104.22 105.22 3.7417 0 0 0 0.38417 1 23972 23972 0 0 1 + 35157 21493 22429 22440 40339 40339 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.9940185546875 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.1 1 104.84 104.34 105.34 3.7417 0 0 0 0.38417 1 23997 23997 0 0 1 + 35158 21493 22429 22440 40340 40340 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_2 6 554.994873046875 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.12 1 104.86 104.36 105.36 3.7417 0 0 0 0.38417 1 24002 24002 0 0 1 + 35159 21493 22429 22440 40341 40341 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_3 7 554.6599731445312 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.31 1 105.12 104.62 105.62 3.8153 0 0 0 0.38417 1 23965 23965 0 0 1 + 35160 21493 22429 22440 40342 40342 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS UPN48_class_I_Rep_3 7 554.9954223632812 3 554.992784 1661.95652 NaN NaN NaN NaN NaN NaN NaN 101.44 1 105.25 104.75 105.75 3.8153 0 0 0 0.38417 1 23990 23990 0 0 1 + 35161 21493 22429 22440 40343 40343 0.1520232432078501 RFYATSNKK 9 Unmodified _RFYATSNKK_ 0 0 0 REV__ENST00000497447.5_1_3:119198882-119205848:+|nuORF REV__ENST00000497447.5_1_3:119198882-119205848:+|nuORF MSMS UPN48_class_I_Rep_3 7 557.805908203125 2 557.803823 1113.59309 NaN NaN NaN NaN NaN NaN NaN 34.562 1 38.235 37.735 38.735 3.6721 0 0 0 0.39518 1 5502 5502 1.8442 0.19162 1 + 35162 19975 22430 22441 40344 40344 0.04083950083122545 RFYFFLFYQYS 11 Unmodified _RFYFFLFYQYS_ 0 0 0 REV__L1ME3A_dup11397|chr12:115975997-115976637:+|1.662845532906178|0.2332794378882829|2.83|151.0|48|3|anti-sense REV__L1ME3A_dup11397|chr12:115975997-115976637:+|1.662845532906178|0.2332794378882829|2.83|151.0|48|3|anti-sense MSMS UPN46_class_I_Rep_3 1 527.2109985351562 3 527.590605 1579.74999 NaN NaN NaN NaN NaN NaN NaN 82.7 1 82.7 82.2 83.2 0 0 0 0 0.38417 1 19605 19605 0.094841 0 1 + 35163 27984 22431 22442 40345 40345 -0.01669809817190071 RFYKEKSKS 9 Unmodified _RFYKEKSKS_ 0 0 0 nc|ENSG00000140995|Q6ZN54-2|DEF8;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 MSMS UPN48_class_I_Rep_2 6 586.8270263671875 2 586.824755 1171.63496 NaN NaN NaN NaN NaN NaN NaN 36.004 1 39.692 39.192 40.192 3.6877 0 0 0 0.39518 1 6006 6006 1.8442 0 1 35164 3201 22432 22443 40346 40346 0.056005057716674855 RFYLRLRIM 9 Unmodified _RFYLRLRIM_ 0 0 0 L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|4|1|sense L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|4|1|sense L1M4b_dup393|chr2:98493873-98495296:+|1.4621979598235575|0.0622125758120012|4.55|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 634.3780517578125 2 634.376435 1266.73832 NaN NaN NaN NaN NaN NaN NaN 106.02 1 109.73 109.23 110.23 3.702 0 0 0 0.4007 1 25011 25011 0.52476 0 1 35165 9008 22433 22444 40347 40347 0.11561714678464341 RFYPFLVLI 9 Unmodified _RFYPFLVLI_ 0 0 0 REV__L1MA6_dup1717|chr5:50775579-50776461:-|1.293777787642214|0.0328289864683606|5.3|151.0|41|1|anti-sense REV__L1MA6_dup1717|chr5:50775579-50776461:-|1.293777787642214|0.0328289864683606|5.3|151.0|41|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3483276367188 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 30.969 1 30.969 30.469 31.469 0 0 0 0 0.4007 1 5115 5115 0.52476 0 1 + 35166 25444 22434 22445 40348 40348 0.10852660167461181 RFYQPVENS 9 Unmodified _RFYQPVENS_ 0 0 0 REV__UCON55_dup258|chr10:11206339-11206490:-|2.6952879221473816|0.0398225214762681|6.08|151.0|9|2|anti-sense REV__UCON55_dup258|chr10:11206339-11206490:-|2.6952879221473816|0.0398225214762681|6.08|151.0|9|2|anti-sense MSMS UPN48_class_I_Rep_3 7 570.279052734375 2 570.277638 1138.54072 NaN NaN NaN NaN NaN NaN NaN 38.898 1 42.553 42.053 43.053 3.6557 0 0 0 0.39518 1 6738 6738 1.8442 0.19162 1 + 35167 32819 22435 22446 40349 40349 -0.023006330504586003 RFYQTIAEY 9 Unmodified _RFYQTIAEY_ 0 0 0 L1MDa_dup4907|chr11:77003144-77004089:-|1.2884723371868338|0.0427173462049698|4.91|151.0|1|1|sense L1MDa_dup4907|chr11:77003144-77004089:-|1.2884723371868338|0.0427173462049698|4.91|151.0|1|1|sense L1MDa_dup4907|chr11:77003144-77004089:-|1.2884723371868338|0.0427173462049698|4.91|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 595.7958374023438 2 595.795663 1189.57677 0.44811 0.00026698 0.37715 0.0002247 0.82525 0.00049168 595.7955068177259 54.75 1.156 57.936 57.538 58.694 3.1856 124 66 3 0 0 0 0.41259 1 12426 12426 7.2892 0.56607 1 243880 35168 12130 22436 22447 40350 40350 -0.010431758736103802 RGAKPKIH 8 Unmodified _RGAKPKIH_ 0 0 0 REV__L1MC2_dup4496|chr12:45871299-45872415:-|1.8786757527072608|0.0224297036269458|6.39|150.0|21|2|sense REV__L1MC2_dup4496|chr12:45871299-45872415:-|1.8786757527072608|0.0224297036269458|6.39|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 453.784423828125 2 453.785236 905.555919 -1.085 -0.00049237 -0.068122 -3.0913E-05 -1.1532 -0.00052328 453.7850828465487 12.885 1.0644 16.258 16.144 17.208 3.3734 229 122 4 0 0 0 0.82752 4 161 161;222;251;274 9.3474 0.75416 1 488740 + 35169 26671 22437 22448 40351;40352;40353;40354 40351 0.09936323328042818 RGALRHHI 8 Unmodified _RGALRHHI_ 0 0 0 REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 480.2839660644531 2 480.285934 958.557316 -0.2195 -0.00010542 -2.2293 -0.0010707 -2.4488 -0.0011761 480.2847079160698 12.926 0.10942 16.314 16.249 16.359 3.388 16 10 2 0 0 0 0.82752 1 185 185 0.79363 0 1 26740 + 35170 22214 22438 22449 40355 40355 0.07637957416795871 RGALRHHI 8 Unmodified _RGALRHHI_ 0 0 0 REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.2847900390625 2 480.285934 958.557316 -0.7972 -0.00038289 -1.8994 -0.00091223 -2.6966 -0.0012951 480.2852517575646 12.913 0.13238 16.287 16.219 16.351 3.3734 23 14 3 0 0 0 0.82752 1 182 182 0.79363 0 1 31564 + 35171 22214 22438 22449 40356 40356 0.07637957416795871 RGALRHHI 8 Unmodified _RGALRHHI_ 0 0 0 REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 480.285934 958.557316 -0.2195 -0.00010542 -2.2293 -0.0010707 -2.4488 -0.0011761 480.2847079160698 12.926 0.10942 16.314 16.249 16.359 3.388 0.01357 -0.00020793 NaN 0.79363 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 26740 + 35172 22214 22438 22449 0.07637957416795871 RGALRHHI 8 Unmodified _RGALRHHI_ 0 0 0 REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF REV__ENST00000415149.6_1_3:107525277-107525364:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 480.285934 958.557316 -0.7972 -0.00038289 -1.8994 -0.00091223 -2.6966 -0.0012951 480.2852517575646 12.913 0.13238 16.287 16.219 16.351 3.3734 -0.01357 0.000109 NaN 0.79363 23 14 3 NaN NaN NaN NaN 0 NaN NaN 0 31564 + 35173 22214 22438 22449 0.07637957416795871 RGAPPPRG 8 Unmodified _RGAPPPRG_ 0 0 0 nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR nc|ENSG00000125944|O43390-4|HNRNPR nc|ENSG00000125944|O43390-4|HNRNPR MULTI-MSMS UPN46_class_I_Rep_3 1 404.7348327636719 2 404.232836 806.45112 0.036034 1.4566E-05 0.1801 7.2801E-05 0.21613 8.7367E-05 404.23278676260855 76.356 0.5022 76.356 76.118 76.62 0 67 45 2 0 0 0 0.82752 1 17784 17784 2.3027 0 1 93114 35174 2521 22439 22450 40357 40357 0.040152018514731935 RGARLSVAVLR 11 Unmodified _RGARLSVAVLR_ 0 0 0 nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 nc|ENSG00000154133|Q8WZ75-2|ROBO4 nc|ENSG00000154133|Q8WZ75-2|ROBO4 MULTI-MSMS UPN48_class_I_Rep_1 5 599.3806762695312 2 599.380563 1196.74657 0.41433 0.00024834 -0.45215 -0.00027101 -0.037819 -2.2668E-05 599.8815820151239 95.393 0.25615 99.009 98.929 99.185 3.6167 58 31 3 0 0 0 0.66059 1 22988 22988 2.2828 0.22302 1 789460 35175 3661 22440 22451 40358 40358 0.15606984919440947 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2484130859375 2 406.248486 810.48242 0.05956 2.4196E-05 0.23804 9.6703E-05 0.2976 0.0001209 406.2485742284305 84.116 0.25053 84.116 84.056 84.306 0 36 24 2 0 0 0 0.82752 1 20040 20040 0.69038 0 1 308510 35176 6407 22441 22452 40359 40359 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.24847412109375 2 406.248486 810.48242 0.060473 2.4567E-05 0.23587 9.582E-05 0.29634 0.00012039 406.24854834385724 84.421 0.22076 84.421 84.323 84.544 0 30 18 3 0 0 0 0.82752 1 20112 20112 0.69038 0 1 191350 35177 6407 22441 22452 40360 40360 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2486572265625 2 406.248486 810.48242 0.063177 2.5666E-05 0.3825 0.00015539 0.44567 0.00018105 406.24857062644816 85.4 0.15518 85.4 85.289 85.444 0 21 13 2 0 0 0 0.82752 1 20348 20348 0.69038 0 1 174640 35178 6407 22441 22452 40361 40361 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2487487792969 2 406.248486 810.48242 0.064068 2.6028E-05 0.42275 0.00017174 0.48682 0.00019777 406.2486848264138 85.932 0.23917 85.932 85.781 86.02 0 42 25 2 0 0 0 0.82752 1 20517 20517 0.69038 0 1 62344 35179 6407 22441 22452 40362 40362 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2483825683594 2 406.248486 810.48242 0.064037 2.6015E-05 0.3989 0.00016205 0.46293 0.00018807 406.24868315519404 89.677 0.19534 89.677 89.609 89.805 0 21 17 2 0 0 0 0.82752 1 21605 21605 0.69038 0 1 67687 35180 6407 22441 22452 40363 40363 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.2483215332031 2 406.248486 810.48242 0.01438 5.8419E-06 0.28438 0.00011553 0.29876 0.00012137 406.2485555642265 80.771 0.46805 84.258 84.181 84.649 3.4874 68 48 2 0 0 0 0.82752 1 20218 20218 0.69038 0 1 253200 35181 6407 22441 22452 40364 40364 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.2485656738281 2 406.248486 810.48242 0.017316 7.0345E-06 0.2915 0.00011842 0.30881 0.00012545 406.2486828605166 81.352 0.30862 84.839 84.649 84.957 3.4874 38 31 2 0 0 0 0.82752 1 20300 20300 0.69038 0 1 83459 35182 6407 22441 22452 40365 40365 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.2483215332031 2 406.248486 810.48242 -0.54346 -0.00022078 0.64256 0.00026104 0.099097 4.0258E-05 406.24873734284085 80.296 0.24512 83.666 83.545 83.79 3.3694 51 34 2 0 0 0 0.82752 1 19989 19989 0.69038 0 1 779210 35183 6407 22441 22452 40366 40366 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.24835205078125 2 406.248486 810.48242 -0.54201 -0.00022019 0.83667 0.0003399 0.29467 0.00011971 406.2487752934907 80.446 0.16601 83.815 83.784 83.95 3.3694 39 23 3 0 0 0 0.82752 1 20046 20046 0.69038 0 1 2179700 35184 6407 22441 22452 40367 40367 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.2493896484375 2 406.248486 810.48242 -0.53504 -0.00021736 0.88842 0.00036092 0.35338 0.00014356 406.2487944290102 81.166 0.27328 84.55 84.503 84.776 3.3839 52 32 3 0 0 0 0.82752 2 20230 20230;20265 0.69038 0 1 323340 35185 6407 22441 22452 40368;40369 40368 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.2486267089844 2 406.248486 810.48242 -0.53036 -0.00021546 0.8656 0.00035165 0.33524 0.00013619 406.2487654304463 81.686 0.18449 85.07 84.983 85.168 3.3839 33 19 2 0 0 0 0.82752 1 20347 20347 0.69038 0 1 1781000 35186 6407 22441 22452 40370 40370 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.2490234375 2 406.248486 810.48242 -0.52647 -0.00021388 1.1496 0.00046704 0.62317 0.00025316 406.2489367153616 82.092 0.17851 85.49 85.432 85.611 3.3984 32 21 3 0 0 0 0.82752 1 20453 20453 0.69038 0 1 256640 35187 6407 22441 22452 40371 40371 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 406.24859619140625 2 406.248486 810.48242 -0.52521 -0.00021337 1.3077 0.00053124 0.78245 0.00031787 406.24896026804623 82.248 0.074493 85.646 85.619 85.694 3.3984 12 7 3 0 0 0 0.82752 1 20508 20508 0.69038 0 1 211830 35188 6407 22441 22452 40372 40372 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.24847412109375 2 406.248486 810.48242 -0.64458 -0.00026186 0.82709 0.000336 0.1825 7.4142E-05 406.24877546327644 80.716 0.10532 84.025 83.951 84.056 3.309 19 13 2 0 0 0 0.82752 1 20183 20183 0.69038 0 1 238010 35189 6407 22441 22452 40373 40373 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2485046386719 2 406.248486 810.48242 -0.64194 -0.00026079 1.284 0.00052163 0.64207 0.00026084 406.249048393348 81.853 0.30846 85.176 84.952 85.261 3.3231 46 31 2 0 0 0 0.82752 3 20445 20445;20481;20486 0.69038 0 1 166140 35190 6407 22441 22452 40374;40375;40376 40374 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2490234375 2 406.248486 810.48242 -0.64092 -0.00026037 1.4262 0.00057941 0.78533 0.00031904 406.24911987320417 82.243 0.22567 85.58 85.454 85.68 3.337 37 25 2 0 0 0 0.82752 1 20592 20592 0.69038 0 1 197420 35191 6407 22441 22452 40377 40377 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2485656738281 2 406.248486 810.48242 -0.62992 -0.0002559 1.1034 0.00044827 0.47353 0.00019237 406.2488767445501 86.764 0.045929 90.144 90.126 90.172 3.3801 8 5 2 0 0 0 0.82752 1 21747 21747 0.69038 0 1 332850 35192 6407 22441 22452 40378 40378 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.24884033203125 2 406.248486 810.48242 -0.62438 -0.00025365 1.5627 0.00063482 0.93827 0.00038117 406.2490252800361 89.061 0.082794 92.454 92.444 92.527 3.3931 11 9 2 0 0 0 0.82752 1 22337 22337 0.69038 0 1 200320 35193 6407 22441 22452 40379 40379 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.2485046386719 2 406.248486 810.48242 -0.12153 -4.9372E-05 0.95055 0.00038616 0.82901 0.00033679 406.248938261389 81.638 0.23929 85.213 85.015 85.255 3.5753 39 28 3 0 0 0 0.82752 1 19438 19438 0.69038 0 1 191400 35194 6407 22441 22452 40380 40380 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.2480773925781 2 406.248486 810.48242 -0.14469 -5.878E-05 0.21573 8.764E-05 0.07104 2.886E-05 406.2485319234438 110.72 0.19328 114.35 114.27 114.46 3.6326 32 24 2 0 0 0 0.82752 1 26869 26869 0.69038 0 1 41962 35195 6407 22441 22452 40381 40381 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 406.2484130859375 2 406.248486 810.48242 0.078523 3.19E-05 0.52661 0.00021393 0.60513 0.00024583 406.2487218987613 81.456 0.29523 85.113 84.901 85.196 3.6567 51 37 2 0 0 0 0.82752 2 19296 19296;19333 0.69038 0 1 112690 35196 6407 22441 22452 40382;40383 40382 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 406.2486572265625 2 406.248486 810.48242 0.12922 5.2497E-05 0.80093 0.00032538 0.93015 0.00037787 406.2488712023544 81.51 0.29765 85.195 85.074 85.372 3.685 47 36 2 0 0 0 0.82752 1 19281 19281 0.69038 0 1 192410 35197 6407 22441 22452 40384 40384 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 406.248486 810.48242 0.064101 2.6041E-05 -0.60609 -0.00024622 -0.54199 -0.00022018 406.24798952077424 89.943 0.040581 89.943 89.918 89.958 0 -0.1003 -0.0012153 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 153450 35198 6407 22441 22452 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 406.248486 810.48242 0.02604 1.0579E-05 0.56389 0.00022908 0.58993 0.00023966 406.2487196660737 82.789 0.10104 86.327 86.276 86.377 3.5386 0.15222 1.9369E-05 NaN 0.69038 12 12 2 NaN NaN NaN NaN 0 NaN NaN 0 33959 35199 6407 22441 22452 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 406.248486 810.48242 -0.51939 -0.000211 1.9498 0.00079212 1.4304 0.00058112 406.2492792296588 82.868 0.040932 86.266 86.229 86.27 3.3984 0.091114 0.0011455 NaN 0.69038 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 33378 35200 6407 22441 22452 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 406.248486 810.48242 -0.64377 -0.00026153 1.1675 0.0004743 0.52373 0.00021277 406.24894251121395 80.957 0.34824 84.28 84.202 84.551 3.3231 -0.14444 0.00040151 NaN 0.69038 59 41 2 NaN NaN NaN NaN 0 NaN NaN 0 138730 35201 6407 22441 22452 0.06959774885569914 RGAVVGPR 8 Unmodified _RGAVVGPR_ 0 0 0 ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF ENST00000373043.1_2_1:38273978-38274170:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 406.248486 810.48242 -0.12 -4.8752E-05 -0.014361 -5.8342E-06 -0.13437 -5.4586E-05 406.24852498396336 80.885 0.088608 84.447 84.422 84.51 3.5624 0.022295 -0.00055875 NaN 0.69038 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 145650 35202 6407 22441 22452 0.06959774885569914 RGAYLDKE 8 Unmodified _RGAYLDKE_ 0 0 0 ENSG00000250799|ENST00000653904|PRODH2 ENSG00000250799|ENST00000653904|PRODH2 ENSG00000250799|ENST00000653904|PRODH2 MSMS UPN46_class_I_Rep_3 1 476.24908447265625 2 476.248349 950.482145 NaN NaN NaN NaN NaN NaN NaN 35.028 1 35.028 34.528 35.528 0 0 0 0 0.40643 1 6328 6328 2.0598 0.21551 1 35203 5742 22442 22453 40385 40385 0.004923103750343216 RGCEDCSFPR 10 Unmodified _RGCEDCSFPR_ 0 0 0 REV__ENSG00000204947|ENST00000378061|ZNF425 REV__ENSG00000204947|ENST00000378061|ZNF425 MULTI-MSMS UPN47_class_I_Rep_2 3 585.74609375 2 585.244957 1168.47536 0.51715 0.00030266 -0.35949 -0.00021039 0.15766 9.227E-05 585.7460719453845 54.277 0.75519 57.596 57.308 58.063 3.3187 58 37 2 0 0 0 0.55448 1 12227 12227 4.897 0.56777 1 101430 + 35204 21212 22443 22454 40386 40386 -0.10213693839477855 RGCEDCSFPR 10 Unmodified _RGCEDCSFPR_ 0 0 0 REV__ENSG00000204947|ENST00000378061|ZNF425 REV__ENSG00000204947|ENST00000378061|ZNF425 MULTI-MSMS UPN47_class_I_Rep_3 4 585.244140625 2 585.244957 1168.47536 0.45745 0.00026772 -0.70603 -0.0004132 -0.24858 -0.00014548 585.2445273004914 54.384 0.49401 57.57 57.369 57.863 3.1856 42 32 2 0 0 0 0.53004 2 12397 12311;12397 8.1555 1.8048 1 84760 + 35205 21212 22443 22454 40387;40388 40388 -0.10213693839477855 RGDFGPPY 8 Unmodified _RGDFGPPY_ 0 0 0 REV__ENSG00000113272|ENST00000231198|THG1L REV__ENSG00000113272|ENST00000231198|THG1L MSMS UPN46_class_I_Rep_3 1 454.71685791015625 2 454.716685 907.418816 NaN NaN NaN NaN NaN NaN NaN 85.417 1 85.417 84.917 85.917 0 0 0 0 0.40738 1 20377 20377 0.79363 0 1 + 35206 18500 22444 22455 40389 40389 -0.03859630342185483 RGDFGPPY 8 Unmodified _RGDFGPPY_ 0 0 0 REV__ENSG00000113272|ENST00000231198|THG1L REV__ENSG00000113272|ENST00000231198|THG1L MSMS UPN48_class_I_Rep_2 6 454.7170715332031 2 454.716685 907.418816 NaN NaN NaN NaN NaN NaN NaN 81.548 1 85.205 84.705 85.705 3.6567 0 0 0 0.40738 1 19358 19358 0.79363 0 1 + 35207 18500 22444 22455 40390 40390 -0.03859630342185483 RGDKKRIK 8 Unmodified _RGDKKRIK_ 0 0 0 L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|89|3|sense;L1M1_dup4385|chr8:98225529-98226584:-|1.0028978314967|0.0471037615226251|4.41|150.0|5|1|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|89|3|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|89|3|sense MSMS UPN48_class_I_Rep_2 6 500.7668762207031 2 500.82235 999.630147 NaN NaN NaN NaN NaN NaN NaN 114.87 1 118.54 118.04 119.04 3.6616 0 0 0 0.40753 1 27476 27476 0.6015 0 1 35208 9515 22445 22456 40391 40391 0.130316664195675 RGDLSRPI 8 Unmodified _RGDLSRPI_ 0 0 0 REV__ENSG00000113658|ENST00000545279|SMAD5 REV__ENSG00000113658|ENST00000545279|SMAD5 MULTI-MSMS UPN48_class_I_Rep_2 6 457.26416015625 2 457.264333 912.514114 0.16391 7.4952E-05 -0.29669 -0.00013567 -0.13278 -6.0715E-05 457.2642686973655 73.89 0.76614 77.467 77.228 77.994 3.5779 135 86 2 0 0 0 0.82752 1 17440 17440 2.3027 0 1 168960 + 35209 18513 22446 22457 40392 40392 0.054357228488470355 RGDRELVV 8 Unmodified _RGDRELVV_ 0 0 0 ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-14|ANK1 ENST00000524227.5_1_8:41525962-41555361:-|nuORF ENST00000524227.5_1_8:41525962-41555361:-|nuORF MSMS UPN46_class_I_Rep_3 1 472.26983642578125 2 472.269616 942.524678 NaN NaN NaN NaN NaN NaN NaN 79.182 1 79.182 78.682 79.682 0 0 0 0 0.40738 1 18586 18586 0.79363 0 1 35210 7248 22447 22458 40393 40393 0.051117055032818826 RGDYGGIVY 9 Unmodified _RGDYGGIVY_ 0 0 0 REV__KLHL12|p.M365Yfs*24|1|0.07|ENSG00000117153|chr1:202895565-202895566|-/G|frameshift_variant REV__KLHL12|p.M365Yfs*24|1|0.07|ENSG00000117153|chr1:202895565-202895566|-/G|frameshift_variant MSMS UPN46_class_I_Rep_3 1 500.28369140625 2 500.248349 998.482145 NaN NaN NaN NaN NaN NaN NaN 82.938 1 82.938 82.438 83.438 0 0 0 0 0.38478 1 19672 19672 4.3292 1.44 1 + 35211 18626 22448 22459 40394 40394 -0.01715689624938932 RGECKRNQQ 9 Unmodified _RGECKRNQQ_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|61|3|anti-sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_2 6 559.7769165039062 2 559.777813 1117.54107 NaN NaN NaN NaN NaN NaN NaN 81.71 1 85.367 84.867 85.867 3.6567 0 0 0 0.3967 1 19401 19401 1.4819 0 1 + 35212 17251 22449 22460 40395 40395 -0.012995366022778398 RGEFEHAGWL 10 Unmodified _RGEFEHAGWL_ 0 0 0 ENST00000536837.1_1_12:121837446-121837686:-|nuORF ENST00000536837.1_1_12:121837446-121837686:-|nuORF ENST00000536837.1_1_12:121837446-121837686:-|nuORF MSMS UPN48_class_I_Rep_1 5 601.2893676757812 2 601.291079 1200.56761 NaN NaN NaN NaN NaN NaN NaN 70.789 1 74.249 73.749 74.749 3.4598 0 0 0 0.53105 1 16515 16515 1.6526 0.17072 1 35213 7334 22450 22461 40396 40396 -0.024655244392988607 RGEFVFKY 8 Unmodified _RGEFVFKY_ 0 0 0 REV__HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|150|1|anti-sense REV__HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_3 4 523.2894897460938 2 523.276909 1044.53927 NaN NaN NaN NaN NaN NaN NaN 67.308 1 70.5 70 71 3.1914 0 0 0 0.388 1 16289 16289 12.532 4.6214 1 + 35214 23840 22451 22462 40397 40397 0.01877777651429824 RGEKVRVP 8 Unmodified _RGEKVRVP_ 0 0 0 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 MSMS UPN48_class_I_Rep_1 5 470.78765869140625 2 470.787976 939.561398 NaN NaN NaN NaN NaN NaN NaN 106.52 1 110.15 109.65 110.65 3.6299 0 0 0 0.40625 1 25663 25663 2.3027 0 1 + 35215 17553 22452 22463 40398 40398 0.08920002119850778 RGEKVRVP 8 Unmodified _RGEKVRVP_ 0 0 0 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 MSMS UPN48_class_I_Rep_3 7 470.7879333496094 2 470.787976 939.561398 NaN NaN NaN NaN NaN NaN NaN 106.46 1 110.15 109.65 110.65 3.6899 0 0 0 0.40625 1 25105 25105 2.3027 0 1 + 35216 17553 22452 22463 40399 40399 0.08920002119850778 RGERPALA 8 Unmodified _RGERPALA_ 0 0 0 REV__ENST00000527236.2_8:145437923-145438016:+|nuORF REV__ENST00000527236.2_8:145437923-145438016:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.251220703125 2 435.251226 868.487899 0.11443 4.9804E-05 -0.34176 -0.00014875 -0.22734 -9.8949E-05 435.2510009603613 74.783 0.21999 74.783 74.697 74.917 0 40 26 3 0 0 0 0.82752 1 17365 17365 0.79363 0 1 224350 + 35217 22814 22453 22464 40400 40400 0.04839453677357142 RGERPALA 8 Unmodified _RGERPALA_ 0 0 0 REV__ENST00000527236.2_8:145437923-145438016:+|nuORF REV__ENST00000527236.2_8:145437923-145438016:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.25103759765625 2 435.251226 868.487899 -0.01274 -5.5453E-06 -0.48251 -0.00021001 -0.49525 -0.00021556 435.2509537952896 71.723 1.0498 75.189 74.866 75.916 3.466 124 95 2 0 0 0 0.82752 1 16798 16798 0.79363 0 1 162610 + 35218 22814 22453 22464 40401 40401 0.04839453677357142 RGERPALA 8 Unmodified _RGERPALA_ 0 0 0 REV__ENST00000527236.2_8:145437923-145438016:+|nuORF REV__ENST00000527236.2_8:145437923-145438016:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 435.251226 868.487899 0.11443 4.9804E-05 -0.34176 -0.00014875 -0.22734 -9.8949E-05 435.2510009603613 74.783 0.21999 74.783 74.697 74.917 0 -0.28502 -2.5002E-05 NaN 0.79363 40 26 3 NaN NaN NaN NaN 0 NaN NaN 0 224350 + 35219 22814 22453 22464 0.04839453677357142 RGERPALA 8 Unmodified _RGERPALA_ 0 0 0 REV__ENST00000527236.2_8:145437923-145438016:+|nuORF REV__ENST00000527236.2_8:145437923-145438016:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.251226 868.487899 0.19246 8.377E-05 -0.64887 -0.00028242 -0.45641 -0.00019865 435.2508820212899 71.729 0.21584 75.255 75.167 75.383 3.5266 0.18679 -0.00029234 NaN 0.79363 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 113720 + 35220 22814 22453 22464 0.04839453677357142 RGERTKVSCK 10 Unmodified _RGERTKVSCK_ 0 0 0 REV__L1MEd_dup716|chr1:93168117-93168553:+|1.0445101193266793|0.0171489304174474|5.93|151.0|7|2|sense REV__L1MEd_dup716|chr1:93168117-93168553:+|1.0445101193266793|0.0171489304174474|5.93|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 582.3160400390625 2 582.319314 1162.62407 NaN NaN NaN NaN NaN NaN NaN 62.355 1 62.355 61.855 62.855 0 0 0 0 0.53105 1 13934 13934 2.4985 0.43874 1 + 35221 28581 22454 22465 40402 40402 0.04926780125720143 RGERVVAL 8 Unmodified _RGERVVAL_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS UPN48_class_I_Rep_3 7 450.27459716796875 2 450.274701 898.534849 0.192 8.6454E-05 -0.23388 -0.00010531 -0.041875 -1.8855E-05 450.2745423813196 84.309 0.20509 88.037 87.999 88.204 3.7281 64 28 3 0 0 0 0.82752 1 20021 20021 2.3027 0 1 2289100 + 35222 17743 22455 22466 40403 40403 0.08152313228504227 RGFFLCKLQ 9 Unmodified _RGFFLCKLQ_ 0 0 0 ENST00000489901.1_1_2:179997000-180008522:-|nuORF ENST00000489901.1_1_2:179997000-180008522:-|nuORF ENST00000489901.1_1_2:179997000-180008522:-|nuORF MSMS UPN47_class_I_Rep_1 2 556.3096923828125 2 556.307687 1110.60082 NaN NaN NaN NaN NaN NaN NaN 66.971 1 70.332 69.832 70.832 3.3611 0 0 0 0.38639 1 16076 16076 3.9444 0.3479 1 35223 7062 22456 22467 40404 40404 0.04994386079056312 RGFGFVTF 8 Unmodified _RGFGFVTF_ 0 0 0 nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000579531.5_1_17:55334408-55351634:+|nuORF;ENST00000584476.1_1_17:55334873-55339700:+|nuORF;ENST00000593093.5_1_19:1271113-1271461:+|nuORF;nc|ENSG00000153944|Q96DH6-3|MSI2;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|3|intron;ENSG00000135097|ENST00000257552|MSI1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|6|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|5|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|2|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|4|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|7|intron;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|1|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|4|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|6|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|1|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|5|intron;ENSG00000153944|ENST00000284073|MSI2;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|2|intron nc|ENSG00000099622|Q14011|CIRBP;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000153944.12,MSI2,chr17,+,I15.1,57401472,57406811|72|19.27|6|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|4|intron ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN46_class_I_Rep_3 1 465.7449951171875 2 465.745245 929.475937 0.19099 8.895E-05 -0.1853 -8.6304E-05 0.0056824 2.6465E-06 465.74515798338496 73.431 0.43092 73.431 73.205 73.636 0 56 45 2 0 0 0 0.82752 2 17001 17001;17036 28.487 13.905 1 132230 35224 2393;1441;3654;3655 22457 22468 40405;40406 40405 0.008378369341812686 RGFIWDPLPAL 11 Unmodified _RGFIWDPLPAL_ 0 0 0 L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|51|1|anti-sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|51|1|anti-sense L1MEc_dup18014|chr21:37383928-37384925:+|2.92090571864798|0.0354967303602051|6.36|151.0|51|1|anti-sense MSMS UPN46_class_I_Rep_3 1 642.8602905273438 2 642.858598 1283.70264 NaN NaN NaN NaN NaN NaN NaN 61.739 1 61.739 61.239 62.239 0 0 0 0 0.38417 1 13759 13759 2.9952 0 1 35225 13062 22458 22469 40407 40407 0.07213955702468411 RGFKKKSVF 9 Unmodified _RGFKKKSVF_ 0 0 0 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 MULTI-MSMS UPN47_class_I_Rep_1 2 548.835205078125 2 548.834926 1095.6553 0.53999 0.00029637 0.056204 3.0847E-05 0.5962 0.00032721 548.8348631466905 109.02 0.2204 112.62 112.55 112.77 3.6046 26 14 3 0 0 0 0.35081 1 26853 26853 10.824 0.75 1 36059000 35226 5405 22459 22470 40408 40408 0.11129721222141598 RGFKKKSVF 9 Unmodified _RGFKKKSVF_ 0 0 0 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 MULTI-MSMS UPN48_class_I_Rep_1 5 548.8352661132812 2 548.834926 1095.6553 0.46306 0.00025414 0.41193 0.00022608 0.87499 0.00048022 548.8349790753412 108.71 0.60485 112.34 112.17 112.77 3.6321 260 72 4 0 0 0 0.35081 1 26305 26305 10.824 2.2306 1 123170000 35227 5405 22459 22470 40409 40409 0.11129721222141598 RGFKKKSVF 9 Unmodified _RGFKKKSVF_ 0 0 0 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 MULTI-SECPEP UPN48_class_I_Rep_2 6 548.835205078125 2 548.834926 1095.6553 0.48918 0.00026848 0.33879 0.00018594 0.82797 0.00045442 548.8349289106466 108.77 0.54192 112.44 112.29 112.83 3.6746 221 59 4 0 0 0 0.11021 1 25819 25819 14.838 3.198 1 118720000 35228 5405 22459 22470 40410 40410 0.11129721222141598 RGFKKKSVF 9 Unmodified _RGFKKKSVF_ 0 0 0 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 548.834926 1095.6553 0.48914 0.00026846 0.44616 0.00024487 0.9353 0.00051333 548.8350539596878 108.6 0.061485 112.27 112.23 112.29 3.6746 -0.14641 9.1445E-05 NaN 10.824 8 2 4 NaN NaN NaN NaN 0 NaN NaN 0 16590000 35229 5405 22459 22470 0.11129721222141598 RGFSPKFIT 9 Unmodified _RGFSPKFIT_ 0 0 0 REV__L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|56|3|sense REV__L1M2_dup8528|chr18:36997376-37000000:+|1.209688259789814|0.0171584135369526|6.14|151.0|56|3|sense MSMS UPN48_class_I_Rep_2 6 526.7694702148438 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.312 1 26.955 26.455 27.455 3.6432 0 0 0 0.3967 1 2522 2522 1.4819 0 1 + 35230 24245 22460 22471 40411 40411 0.05773753059793307 RGGGVRWGLY 10 Unmodified _RGGGVRWGLY_ 0 0 0 REV__L1PREC2_dup6581|chr15:30652996-30653206:-|1.511982948703015|0.0372608099444696|5.34|151.0|1|1|sense REV__L1PREC2_dup6581|chr15:30652996-30653206:-|1.511982948703015|0.0372608099444696|5.34|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.8035888671875 2 560.804157 1119.59376 0.33603 0.00018845 -1.4264 -0.00079994 -1.0904 -0.00061149 560.8032893379739 54.384 0.52172 57.886 57.57 58.091 3.5014 36 22 2 0 0 0 0.51003 1 12212 12212 10.824 0.75 1 87557 + 35231 30745 22461 22472 40412 40412 0.03874789522865285 RGGKKMLL 8 Unmodified _RGGKKMLL_ 0 0 0 REV__L1MA3_dup4281|chr7:152048750-152051180:-|1.727951263336586|0.0377226903744385|5.52|151.0|36|2|sense REV__L1MA3_dup4281|chr7:152048750-152051180:-|1.727951263336586|0.0377226903744385|5.52|151.0|36|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 451.93231201171875 2 451.783847 901.553142 -0.16633 -7.5145E-05 0.98814 0.00044642 0.82181 0.00037128 451.784362846102 92.82 0.041649 96.223 96.194 96.236 3.4034 7 5 2 0 0 0 0.72333 1 23157 23157 2.5775 0 1 33897 + 35232 25034 22462 22473 40413 40413 0.09842731878882205 RGGPKATR 8 Unmodified _RGGPKATR_ 0 0 0 ENSG00000116903|ENST00000366645|EXOC8 ENSG00000116903|ENST00000366645|EXOC8 ENSG00000116903|ENST00000366645|EXOC8 MULTI-MSMS UPN47_class_I_Rep_3 4 421.7513427734375 2 421.751393 841.488233 -0.56524 -0.00023839 0.46158 0.00019467 -0.10366 -4.372E-05 421.7514271669543 79.756 0.59222 83.051 82.756 83.348 3.295 90 61 2 0 0 0 0.82752 1 20020 20020 0.6015 0 1 65288 35233 2202 22463 22474 40414 40414 0.061148733972345326 RGGQKKAP 8 Unmodified _RGGQKKAP_ 0 0 0 REV__ENSG00000107833|ENST00000370110|NPM3 REV__ENSG00000107833|ENST00000370110|NPM3 MULTI-MSMS UPN48_class_I_Rep_3 7 421.2535095214844 2 421.253769 840.492984 0.15615 6.5777E-05 0.256 0.00010784 0.41215 0.00017362 421.25386490276713 75.017 0.48056 78.583 78.409 78.89 3.5659 61 48 2 0 0 0 0.82752 1 17651 17651 2.3027 2.3027 1 121590 + 35234 18362 22464 22475 40415 40415 0.06635757539982023 RGHKTLAS 8 Unmodified _RGHKTLAS_ 0 0 0 REV__ENSG00000179965|ENST00000319296|ZNF771 REV__ENSG00000179965|ENST00000319296|ZNF771 MULTI-MSMS UPN48_class_I_Rep_2 6 435.25042724609375 2 435.251226 868.487899 0.096761 4.2115E-05 -0.58615 -0.00025512 -0.48939 -0.00021301 435.2507806894506 70.266 1.3953 73.802 72.938 74.333 3.5359 222 129 3 0 0 0 0.82752 1 16206 16206 2.3027 2.3027 1 183420 + 35235 20693 22465 22476 40416 40416 0.04839453677379879 RGHTYRYA 8 Unmodified _RGHTYRYA_ 0 0 0 REV__nc|ENSG00000186628|A1L4K1-2|FSD2 REV__nc|ENSG00000186628|A1L4K1-2|FSD2 MSMS UPN48_class_I_Rep_2 6 512.2618408203125 2 512.259582 1022.50461 NaN NaN NaN NaN NaN NaN NaN 75.725 1 79.326 78.826 79.826 3.6011 0 0 0 0.40604 1 17868 17868 2.5775 0.51773 1 + 35236 20895 22466 22477 40417 40417 -0.005740454366900849 RGIEFEDE 8 Unmodified _RGIEFEDE_ 0 0 0 ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A MSMS UPN48_class_I_Rep_3 7 497.765625 2 497.727446 993.44034 NaN NaN NaN NaN NaN NaN NaN 24.49 1 28.259 27.759 28.759 3.769 0 0 0 0.40738 1 2842 2842 0.79363 0 1 35237 5459 22467 22478 40418 40418 -0.05664290104141401 RGIGFLWL 8 Unmodified _RGIGFLWL_ 0 0 0 REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|223|3|anti-sense REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|223|3|anti-sense MSMS UPN48_class_I_Rep_1 5 481.6177673339844 2 481.284537 960.554522 NaN NaN NaN NaN NaN NaN NaN 91.927 1 95.553 95.053 96.053 3.626 0 0 0 0.40581 1 22095 22095 2.8892 0 1 + 35238 23640 22468 22479 40419 40419 0.07266689239258994 RGILDSAWQ 9 Unmodified _RGILDSAWQ_ 0 0 0 nc|ENSG00000223519|B7ZC32|KIF28P nc|ENSG00000223519|B7ZC32|KIF28P nc|ENSG00000223519|B7ZC32|KIF28P MSMS UPN47_class_I_Rep_2 3 523.2894287109375 2 523.274898 1044.53524 NaN NaN NaN NaN NaN NaN NaN 67.324 1 70.587 70.087 71.087 3.2636 0 0 0 0.37476 1 16230 16230 6.7232 0 1 35239 16828 22469 22480 40420 40420 0.014756881576886371 RGILRRKIWL 10 Unmodified _RGILRRKIWL_ 0 0 0 ENST00000578237.5_1_17:15555163-15586188:-|nuORF ENST00000578237.5_1_17:15555163-15586188:-|nuORF ENST00000578237.5_1_17:15555163-15586188:-|nuORF MSMS UPN47_class_I_Rep_1 2 437.62139892578125 3 437.622574 1309.84589 NaN NaN NaN NaN NaN NaN NaN 98.591 1 102.38 101.88 102.88 3.7926 0 0 0 0.53105 1 24404 24404 0.15932 0 1 35240 7541 22470 22481 40421 40421 0.2033642760420662 RGIQICKI 8 Unmodified _RGIQICKI_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|28|1|sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|28|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 465.28021240234375 2 465.781305 929.548056 0.2211 0.00010298 0.32578 0.00015174 0.54688 0.00025473 465.78145100350974 83.449 0.14748 83.449 83.41 83.558 0 20 15 2 0 0 0 0.72333 1 19835 19835 2.3027 0 1 94254 + 35241 28975 22471 22482 40422 40422 0.08046428016257323 RGIRNRVF 8 Unmodified _RGIRNRVF_ 0 0 0 REV__ENSG00000152104|ENST00000366956|PTPN14 REV__ENSG00000152104|ENST00000366956|PTPN14 MSMS UPN48_class_I_Rep_3 7 509.3060302734375 2 509.306867 1016.59918 NaN NaN NaN NaN NaN NaN NaN 83.896 1 87.625 87.125 88.125 3.7281 0 0 0 0.4044 1 19902 19902 4.756 2.4533 1 + 35242 19671 22472 22483 40423 40423 0.09154513105318074 RGISSSSWIF 10 Unmodified _RGISSSSWIF_ 0 0 0 L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.2958374023438 2 570.29583 1138.57711 0.52235 0.00029789 -0.17482 -9.9699E-05 0.34753 0.00019819 570.2956273173245 58.42 0.81815 61.907 61.507 62.325 3.487 128 48 3 0 0 0 0.54822 1 12866 12866 5.7319 5.7319 1 843060 35243 12914 22473 22484 40424 40424 0.013362438462309001 RGISSSSWIF 10 Unmodified _RGISSSSWIF_ 0 0 0 L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.2974243164062 2 570.29583 1138.57711 0.40452 0.0002307 -0.015774 -8.996E-06 0.38875 0.0002217 570.295763539352 58.243 0.76452 61.774 61.42 62.185 3.5317 134 48 3 0 0 0 0.52562 1 12706 12706 8.7454 0.58988 1 889990 35244 12914 22473 22484 40425 40425 0.013362438462309001 RGIYTLFT 8 Unmodified _RGIYTLFT_ 0 0 0 REV__HERVL-int_dup1633|chr10:16449911-16451044:-|1.193166496839302|0.0986564715468271|3.6|151.0|11|1|sense REV__HERVL-int_dup1633|chr10:16449911-16451044:-|1.193166496839302|0.0986564715468271|3.6|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 485.7548522949219 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 17.888 1 21.414 20.914 21.914 3.5261 0 0 0 0.40746 1 1113 1113 0.69038 0 1 + 35245 23859 22474 22485 40426 40426 0.042383752771456784 RGKARILE 8 Unmodified _RGKARILE_ 0 0 0 REV__L1PA5_dup516|chr1:174541789-174545718:-|2.448675547594119|0.1488457170781245|4.04|151.0|75|3|sense REV__L1PA5_dup516|chr1:174541789-174545718:-|2.448675547594119|0.1488457170781245|4.04|151.0|75|3|sense MSMS UPN47_class_I_Rep_3 4 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 79.395 1 82.69 82.19 83.19 3.295 0 0 0 0.40625 1 19842 19842 2.3027 0 1 + 35246 29776 22475 22486 40427 40427 0.1039228863688777 RGKFIALH 8 Unmodified _RGKFIALH_ 0 0 0 L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|88|3|sense;L1PA5_dup3726|chr5:83127983-83133776:-|1.163176355464448|0.0668289464734377|4.12|151.0|90|2|sense;L1PA5_dup693|chr1:231907167-231912735:-|4.213830471913982|0.0400776360720188|6.72|151.0|77|2|sense;L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|153|3|sense;L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|50|2|sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|88|3|sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|88|3|sense MSMS UPN47_class_I_Rep_1 2 471.28619384765625 2 471.287611 940.56067 NaN NaN NaN NaN NaN NaN NaN 21.801 1 25.476 24.976 25.976 3.6749 0 0 0 0.40738 1 2426 2426 0.79363 0 1 35247 13627 22476 22487 40428 40428 0.08801207470787631 RGKFIALH 8 Unmodified _RGKFIALH_ 0 0 0 L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|88|3|sense;L1PA5_dup3726|chr5:83127983-83133776:-|1.163176355464448|0.0668289464734377|4.12|151.0|90|2|sense;L1PA5_dup693|chr1:231907167-231912735:-|4.213830471913982|0.0400776360720188|6.72|151.0|77|2|sense;L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|153|3|sense;L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|50|2|sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|88|3|sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|88|3|sense MSMS UPN47_class_I_Rep_3 4 471.28704833984375 2 471.287611 940.56067 NaN NaN NaN NaN NaN NaN NaN 22.12 1 25.469 24.969 25.969 3.3496 0 0 0 0.40738 1 2594 2594 0.79363 0 1 35248 13627 22476 22487 40429 40429 0.08801207470787631 RGKFIRIY 8 Unmodified _RGKFIRIY_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8221435546875 2 526.821818 1051.62908 0.33307 0.00017547 0.18369 9.6771E-05 0.51676 0.00027224 526.8218729936063 108.96 0.7616 108.96 108.88 109.64 0 171 54 4 0 0 0 0.82752 3 26678 26678;26740;26896 13.508 0.97634 1 75247000 35249 8194 22477 22488 40430;40431;40432 40430 0.10533452050663072 RGKFIRIY 8 Unmodified _RGKFIRIY_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.82177734375 2 526.821818 1051.62908 0.44626 0.0002351 0.05596 2.9481E-05 0.50222 0.00026458 526.8217583836206 108.74 0.42503 112.37 112.19 112.62 3.6355 170 42 5 0 0 0 0.82752 1 26806 26806 9.3474 0 1 252580000 35250 8194 22477 22488 40433 40433 0.10533452050663072 RGKFIRIY 8 Unmodified _RGKFIRIY_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 526.822265625 2 526.821818 1051.62908 0.42104 0.00022181 0.20873 0.00010996 0.62977 0.00033178 526.821835387604 108.76 0.64324 112.3 112.1 112.74 3.5382 275 73 5 0 0 0 0.82752 2 26620 26620;26670 9.3474 0 1 227330000 35251 8194 22477 22488 40434;40435 40434 0.10533452050663072 RGKFIRIY 8 Unmodified _RGKFIRIY_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 526.8223876953125 2 526.821818 1051.62908 0.30145 0.00015881 0.13857 7.3004E-05 0.44003 0.00023181 526.8217883423441 108.73 0.57881 112.37 112.18 112.76 3.6321 264 68 5 0 0 0 0.82752 1 26288 26288 9.3474 0 1 148460000 35252 8194 22477 22488 40436 40436 0.10533452050663072 RGKFIRIY 8 Unmodified _RGKFIRIY_ 0 0 0 HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|164|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 526.8219604492188 2 526.821818 1051.62908 0.4578 0.00024118 -0.10159 -5.3522E-05 0.35621 0.00018766 526.8216965830961 108.87 0.29932 112.55 112.51 112.81 3.6751 90 32 3 0 0 0 0.82752 1 25822 25822 9.3474 0 1 71510000 35253 8194 22477 22488 40437 40437 0.10533452050663072 RGKGKPTTTKK 11 Unmodified _RGKGKPTTTKK_ 0 0 0 REV__nc|ENSG00000077097|Q02880-2|TOP2B REV__nc|ENSG00000077097|Q02880-2|TOP2B MSMS UPN47_class_I_Rep_2 3 601.3719482421875 2 601.372404 1200.73025 NaN NaN NaN NaN NaN NaN NaN 42.914 1 46.275 45.775 46.775 3.3611 0 0 0 0.38417 1 8799 8799 0 0 1 + 35254 17875 22478 22489 40438 40438 0.13791858962645165 RGKGKVAP 8 Unmodified _RGKGKVAP_ 0 0 0 REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|10|2|sense REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|10|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 406.8580017089844 2 406.758687 811.502821 -0.5342 -0.00021729 -0.28414 -0.00011557 -0.81834 -0.00033287 406.75859533923546 12.966 0.41789 16.415 16.218 16.636 3.45 60 36 3 0 0 0 0.72333 1 232 232 2.3027 0 1 101980 + 35255 31730 22479 22490 40439 40439 0.08952945545354396 RGKGKVAP 8 Unmodified _RGKGKVAP_ 0 0 0 REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|10|2|sense REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|10|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 406.758687 811.502821 -0.99903 -0.00040636 0.31432 0.00012785 -0.68471 -0.00027851 406.7588372067319 12.996 0.41083 16.384 16.164 16.575 3.388 -0.015501 0.0002035 NaN 2.3027 78 40 3 NaN NaN NaN NaN 0 NaN NaN 0 91715 + 35256 31730 22479 22490 0.08952945545354396 RGKGPFYM 8 Unmodified _RGKGPFYM_ 0 0 0 REV__ENST00000498554.5_1_19:2096914-2097955:+|nuORF REV__ENST00000498554.5_1_19:2096914-2097955:+|nuORF MSMS UPN46_class_I_Rep_3 1 478.24566650390625 2 478.244555 954.474557 NaN NaN NaN NaN NaN NaN NaN 19.823 1 19.823 19.323 20.323 0 0 0 0 0.40738 1 1956 1956 0.79363 0.443 1 + 35257 22679 22480 22491 40440 40440 -0.004501204262282954 RGKIKSNA 8 Unmodified _RGKIKSNA_ 0 0 0 REV__L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|121|3|sense REV__L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|121|3|sense MSMS UPN47_class_I_Rep_3 4 437.2652587890625 2 437.266876 872.519199 NaN NaN NaN NaN NaN NaN NaN 23.587 1 26.938 26.438 27.438 3.3509 0 0 0 0.40746 1 3025 3025 0.69038 0 1 + 35258 29043 22481 22492 40441 40441 0.07784026711453862 RGKKKEEL 8 Unmodified _RGKKKEEL_ 0 0 0 ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000495728.1_1_9:127623696-127624209:-|nuORF ENST00000495728.1_1_9:127623696-127624209:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 494.2999572753906 2 494.300916 986.587279 -0.35257 -0.00017428 -0.43723 -0.00021612 -0.78981 -0.0003904 494.30058300636927 12.763 0.3238 16.213 16.145 16.469 3.45 55 28 3 0 0 0 0.82752 1 139 139 13.906 3.0821 1 172820 35259 2999 22482 22493 40442 40442 0.09344851571461277 RGKKKEEL 8 Unmodified _RGKKKEEL_ 0 0 0 ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000495728.1_1_9:127623696-127624209:-|nuORF ENST00000495728.1_1_9:127623696-127624209:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.30023193359375 2 494.300916 986.587279 -0.12608 -6.2321E-05 -0.49562 -0.00024499 -0.6217 -0.00030731 494.30051033446995 12.798 0.27989 16.186 16.097 16.377 3.388 68 30 3 0 0 0 0.82752 1 145 145 10.074 2.7847 1 136060 35260 2999 22482 22493 40443 40443 0.09344851571461277 RGKKKEEL 8 Unmodified _RGKKKEEL_ 0 0 0 ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000495728.1_1_9:127623696-127624209:-|nuORF ENST00000495728.1_1_9:127623696-127624209:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.29986572265625 2 494.300916 986.587279 -0.67103 -0.00033169 -0.11415 -5.6424E-05 -0.78518 -0.00038811 494.3007096623694 12.792 0.35713 16.166 16.081 16.438 3.3734 76 41 2 0 0 0 0.82752 2 178 149;178 18.146 4.2403 1 97735 35261 2999 22482 22493 40444;40445 40445 0.09344851571461277 RGKRPGTA 8 Unmodified _RGKRPGTA_ 0 0 0 REV__HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|43|3|anti-sense REV__HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|43|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 421.75128173828125 2 421.751393 841.488233 -0.093969 -3.9631E-05 0.0099932 4.2147E-06 -0.083975 -3.5417E-05 421.75132070878584 80.805 0.62571 84.368 84.129 84.755 3.5624 175 82 3 0 0 0 0.82752 3 19234 19234;19263;19293 2.5775 0 1 1155100 + 35262 23607 22483 22494 40446;40447;40448 40446 0.061148733972345326 RGKRPGTA 8 Unmodified _RGKRPGTA_ 0 0 0 REV__HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|43|3|anti-sense REV__HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|43|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 421.75140380859375 2 421.751393 841.488233 -0.093969 -3.9631E-05 0.0099932 4.2147E-06 -0.083975 -3.5417E-05 421.75132070878584 80.805 0.62571 84.368 84.129 84.755 3.5624 175 82 3 0 0 0 0.72333 1 19209 19209 0.69038 0 1 1155100 + 35263 23607 22483 22494 40449 40449 0.061148733972345326 RGKRPLWH 8 Unmodified _RGKRPLWH_ 0 0 0 ENSG00000092978|ENST00000366935|GPATCH2;nc|ENSG00000092978|Q9NW75-2|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 MSMS UPN46_class_I_Rep_3 1 525.3097534179688 2 525.30941 1048.60427 NaN NaN NaN NaN NaN NaN NaN 102.25 1 102.25 101.75 102.75 0 0 0 0 0.40738 1 24951 24951 0.79363 0 1 35264 1399 22484 22495 40450 40450 0.08190816967930914 RGKTEAAIK 9 Unmodified _RGKTEAAIK_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-SECPEP UPN46_class_I_Rep_3 1 487.2933044433594 2 487.293091 972.571629 0.28612 0.00013943 -0.046728 -2.277E-05 0.2394 0.00011666 487.29298777975987 85.49 0.13787 85.49 85.4 85.538 0 30 16 3 0 0 0 0.12477 1 20378 20378 1.6526 0 1 516710 35265 2935 22485 22496 40451 40451 0.0842456505440623 RGKTEAAIK 9 Unmodified _RGKTEAAIK_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS UPN48_class_I_Rep_3 7 487.79486083984375 2 487.293091 972.571629 0.26695 0.00013008 -0.018958 -9.2383E-06 0.24799 0.00012085 487.2929616777723 81.901 0.63246 85.586 85.317 85.949 3.685 109 75 2 0 0 0 0.49026 2 19371 19371;19410 1.6526 0 1 162590 35266 2935 22485 22496 40452;40453 40452 0.0842456505440623 RGKTEAAIK 9 Unmodified _RGKTEAAIK_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 487.293091 972.571629 0.16418 8.0002E-05 -0.01078 -5.2532E-06 0.1534 7.4749E-05 487.2930019254363 81.928 0.45911 85.503 85.326 85.785 3.5753 -0.023241 1.0629E-05 NaN 1.6526 78 55 2 NaN NaN NaN NaN 0 NaN NaN 0 108790 35267 2935 22485 22496 0.0842456505440623 RGKTRALT 8 Unmodified _RGKTRALT_ 0 0 0 REV__ENST00000470487.5_1_3:167813015-167813639:-|nuORF REV__ENST00000470487.5_1_3:167813015-167813639:-|nuORF MSMS UPN46_class_I_Rep_3 1 451.7798767089844 2 451.780151 901.545748 NaN NaN NaN NaN NaN NaN NaN 81.059 1 81.059 80.559 81.559 0 0 0 0 0.40746 1 19123 19123 0.69038 0 1 + 35268 22501 22486 22497 40454 40454 0.0910371560277099 RGLDPVTWL 9 Unmodified _RGLDPVTWL_ 0 0 0 REV__ENST00000584054.5_1_17:7476159-7478064:+|nuORF REV__ENST00000584054.5_1_17:7476159-7478064:+|nuORF MSMS UPN47_class_I_Rep_3 4 528.8565673828125 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 31.642 1 34.941 34.441 35.441 3.2991 0 0 0 0.39518 1 5419 5419 1.8442 0.19162 1 + 35269 23134 22487 22498 40455 40455 0.0508144919717779 RGLFIPVFL 9 Unmodified _RGLFIPVFL_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|157|2|anti-sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|157|2|anti-sense MSMS UPN48_class_I_Rep_2 6 531.318359375 2 531.328945 1060.64334 NaN NaN NaN NaN NaN NaN NaN 86.001 1 89.706 89.206 90.206 3.7058 0 0 0 0.38299 1 20473 20473 4.756 0.42677 1 + 35270 25025 22488 22499 40456 40456 0.11544104478934969 RGLLGGNR 8 Unmodified _RGLLGGNR_ 0 0 0 REV__ENSG00000104549|ENST00000265896|SQLE REV__ENSG00000104549|ENST00000265896|SQLE MULTI-MSMS UPN48_class_I_Rep_3 7 421.7509460449219 2 421.751393 841.488233 0.14723 6.2095E-05 -0.53515 -0.0002257 -0.38792 -0.00016361 421.7510821736457 79.403 0.57722 83.045 82.824 83.402 3.6423 97 72 2 0 0 0 0.82752 1 18885 18885 2.3027 0 1 177870 + 35271 18260 22489 22500 40457 40457 0.061148733972345326 RGLLITLTKFF 11 Unmodified _RGLLITLTKFF_ 0 0 0 ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-2|GPR89A;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A ENST00000460277.5_1_1:145765021-145811987:-|nuORF ENST00000460277.5_1_1:145765021-145811987:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 437.2674865722656 3 436.939458 1307.79654 -0.041541 -1.8151E-05 1.2216 0.00053375 1.18 0.0005156 436.9395960975434 50.637 0.64893 54.162 53.757 54.406 3.5246 72 43 2 0 0 0 0.66092 1 10427 10427 2.2527 0.92309 1 92134 35272 6852 22490 22501 40458 40458 0.1549567480474252 RGLLITLTKFF 11 Unmodified _RGLLITLTKFF_ 0 0 0 ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-2|GPR89A;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A ENST00000460277.5_1_1:145765021-145811987:-|nuORF ENST00000460277.5_1_1:145765021-145811987:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 437.26654052734375 3 436.939458 1307.79654 0.079809 3.4872E-05 1.3058 0.00057054 1.3856 0.00060541 437.2748067470986 50.393 0.69518 54.087 53.735 54.431 3.6946 61 44 2 0 0 0 0.66092 1 10342 10342 2.2527 0.51045 1 95736 35273 6852 22490 22501 40459 40459 0.1549567480474252 RGLLITLTKFF 11 Unmodified _RGLLITLTKFF_ 0 0 0 ENST00000460277.5_1_1:145765021-145811987:-|nuORF;nc|ENSG00000188092|B7ZAQ6-2|GPR89A;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A ENST00000460277.5_1_1:145765021-145811987:-|nuORF ENST00000460277.5_1_1:145765021-145811987:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.939458 1307.79654 0.029415 1.2853E-05 1.7028 0.00074403 1.7322 0.00075689 437.27473062283445 50.539 0.34892 54.16 53.955 54.304 3.621 0.023304 0.00044317 NaN 2.2527 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 131820 35274 6852 22490 22501 0.1549567480474252 RGLLPEAG 8 Unmodified _RGLLPEAG_ 0 0 0 ENSG00000110497.14,AMBRA1,chr11,-,I12.1,46508371,46512726|44|6.56|7|intron;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 ENSG00000110497.14,AMBRA1,chr11,-,I12.1,46508371,46512726|44|6.56|7|intron ENSG00000110497.14,AMBRA1,chr11,-,I12.1,46508371,46512726|44|6.56|7|intron MULTI-MSMS UPN47_class_I_Rep_1 2 406.7348327636719 2 406.734877 811.455202 -0.49428 -0.00020104 0.60544 0.00024625 0.11116 4.5213E-05 406.73503251103045 23.907 0.67653 27.637 27.347 28.024 3.7298 84 54 2 0 0 0 0.82752 1 3051 3051 7.9102 0 1 95681 35275 1942 22491 22502 40460 40460 0.04193246554518737 RGLPKGNRPV 10 Unmodified _RGLPKGNRPV_ 0 0 0 nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3 nc|ENSG00000101079|Q9UGV2-2|NDRG3 nc|ENSG00000101079|Q9UGV2-2|NDRG3 MSMS UPN48_class_I_Rep_2 6 547.3451538085938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 110.63 1 114.3 113.8 114.8 3.669 0 0 0 0.53105 1 26316 26316 1.4819 0.41044 1 35276 1546 22492 22503 40461 40461 0.10899051448268438 RGLPKHVK 8 Unmodified _RGLPKHVK_ 0 0 0 REV__L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense REV__L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 467.8015441894531 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 84.171 1 87.594 87.094 88.094 3.4232 0 0 0 0.40604 1 20993 20993 2.5775 0 1 + 35277 24690 22493 22504 40462 40462 0.11776896362130174 RGLPSFAWVDN 11 Unmodified _RGLPSFAWVDN_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MSMS UPN48_class_I_Rep_3 7 631.3182983398438 2 631.319837 1260.62512 NaN NaN NaN NaN NaN NaN NaN 51.266 1 54.877 54.377 55.377 3.6105 0 0 0 0.38417 1 10488 10488 0.96228 0.36078 1 + 35278 18288 22494 22505 40463 40463 0.0052331776628307125 RGLQPLKLDYR 11 Unmodified _RGLQPLKLDYR_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MSMS UPN46_class_I_Rep_3 1 453.41510009765625 3 453.601616 1357.78302 NaN NaN NaN NaN NaN NaN NaN 72.657 1 72.657 72.157 73.157 0 0 0 0 0.38417 1 16803 16803 0.50596 0.051438 1 35279 4902 22495 22506 40464 40464 0.11843817025510361 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 484.8402099609375 2 484.840011 967.665469 0.27974 0.00013563 0.38873 0.00018847 0.66847 0.0003241 484.84026350567 108.81 0.95669 108.81 108.68 109.64 0 89 74 2 0 0 0 0.82752 1 26650 26650 2.5775 0 1 12177000 35280 16536 22496 22507 40465 40465 0.1803432894737398 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSMS UPN46_class_I_Rep_3 1 484.8397521972656 2 484.840011 967.665469 NaN NaN NaN NaN NaN NaN NaN 108.98 1 108.98 108.48 109.48 0 0 0 0 0.40604 1 26699 26699 2.5775 0 1 35281 16536 22496 22507 40466 40466 0.1803432894737398 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 484.8399963378906 2 484.840011 967.665469 0.25598 0.00012411 0.073287 3.5532E-05 0.32927 0.00015964 484.8399959706125 108.33 0.56304 111.97 111.68 112.24 3.6355 176 57 4 0 0 0 0.82752 1 26513 26513 0.69038 0 1 21927000 35282 16536 22496 22507 40467 40467 0.1803432894737398 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.8399963378906 2 484.840011 967.665469 0.13292 6.4443E-05 0.23656 0.00011469 0.36948 0.00017914 484.8400929000968 108.46 0.23975 112.09 111.95 112.19 3.6313 41 23 3 0 0 0 0.82752 1 26217 26217 0.69038 0 1 10698000 35283 16536 22496 22507 40468 40468 0.1803432894737398 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.8400573730469 2 484.840011 967.665469 0.24801 0.00012024 0.093229 4.5201E-05 0.34124 0.00016544 484.8399735321339 108.31 0.54762 111.98 111.72 112.27 3.6746 221 61 4 0 0 0 0.82752 1 25684 25684 0.69038 0 1 67325000 35284 16536 22496 22507 40469 40469 0.1803432894737398 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 484.840011 967.665469 0.41748 0.00020241 -0.00068495 -3.3209E-07 0.41679 0.00020208 484.8399845363615 108.42 0.75065 111.95 111.91 112.66 3.5333 0.0088123 -3.7036E-05 NaN 0.69038 151 85 2 NaN NaN NaN NaN 0 NaN NaN 0 20889000 35285 16536 22496 22507 0.1803432894737398 RGLRKLLL 8 Unmodified _RGLRKLLL_ 0 0 0 MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MSTA_dup8844|chr7:130104549-130104954:-|1.0875337322376857|0.0722192445804071|3.91|151.0|15|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 484.840011 967.665469 0.13312 6.454E-05 -0.076125 -3.6908E-05 0.05699 2.7631E-05 484.8399520737323 108.26 0.31435 111.89 111.79 112.11 3.6313 -0.051624 -0.00011019 NaN 0.69038 42 23 4 NaN NaN NaN NaN 0 NaN NaN 0 15704000 35286 16536 22496 22507 0.1803432894737398 RGLRLWMCL 9 Unmodified _RGLRLWMCL_ 0 0 0 L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|313|2|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|313|2|anti-sense L1PA17_dup1514|chr5:95029939-95035726:+|1.2687463492445734|0.0275652315583861|5.52|151.0|313|2|anti-sense MSMS UPN47_class_I_Rep_3 4 574.3152465820312 2 574.314989 1146.61542 NaN NaN NaN NaN NaN NaN NaN 77.218 1 80.487 79.987 80.987 3.269 0 0 0 0.4007 1 19220 19220 0.52476 0 1 35287 14147 22497 22508 40470 40470 0.047981349555357156 RGLRPFVH 8 Unmodified _RGLRPFVH_ 0 0 0 nc|ENSG00000140479|P29122-8|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6 nc|ENSG00000140479|P29122-8|PCSK6 nc|ENSG00000140479|P29122-8|PCSK6 MULTI-MSMS UPN48_class_I_Rep_3 7 491.7960205078125 2 491.290685 980.566818 0.096751 4.7533E-05 -1.3654 -0.0006708 -1.2686 -0.00062327 491.28912499442134 53.518 0.69637 57.101 56.767 57.464 3.5836 105 54 3 0 0 0 0.82752 1 11077 11077 2.5775 0.51773 1 627310 35288 16698 22498 22509 40471 40471 0.07575725702315594 RGLRQRPVRR 10 Unmodified _RGLRQRPVRR_ 0 0 0 REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 647.4449462890625 2 647.407978 1292.8014 0.58463 0.00037849 1.1834 0.00076617 1.7681 0.0011447 647.4088481908324 108.08 0.065018 111.72 111.67 111.73 3.6355 8 4 3 0 0 0 0.84575 1 26516 26516 3.2813 1.7994 1 267960 + 35289 21987 22499 22510 40472 40472 0.1667141651073507 RGLSPTDAPH 10 Unmodified _RGLSPTDAPH_ 0 0 0 ENSG00000106571|ENST00000395925|GLI3 ENSG00000106571|ENST00000395925|GLI3 ENSG00000106571|ENST00000395925|GLI3 MULTI-MSMS UPN47_class_I_Rep_3 4 525.769287109375 2 525.76998 1049.52541 -0.31764 -0.00016701 -0.036264 -1.9067E-05 -0.35391 -0.00018607 525.7698310016782 27.348 0.54208 30.69 30.446 30.988 3.3422 84 46 2 0 0 0 0.56309 1 4081 4081 1.6526 0.85899 1 72700 35290 1793 22500 22511 40473 40473 0.0026250015232562873 RGMEKFFWC 9 Unmodified _RGMEKFFWC_ 0 0 0 REV__ENST00000252818.4_1_19:18390620-18391193:-|nuORF REV__ENST00000252818.4_1_19:18390620-18391193:-|nuORF MSMS UPN48_class_I_Rep_2 6 602.2188720703125 2 602.275529 1202.53651 NaN NaN NaN NaN NaN NaN NaN 112.21 1 115.88 115.38 116.38 3.6655 0 0 0 0.39518 1 26722 26722 1.8442 0 1 + 35291 21526 22501 22512 40474 40474 -0.056661370693745994 RGNLVLLRVQT 11 Unmodified _RGNLVLLRVQT_ 0 0 0 L1MEf_dup4129|chr6:32861032-32861486:+|1.0061912570938107|0.2738321617232976|1.88|151.0|25|3|anti-sense L1MEf_dup4129|chr6:32861032-32861486:+|1.0061912570938107|0.2738321617232976|1.88|151.0|25|3|anti-sense L1MEf_dup4129|chr6:32861032-32861486:+|1.0061912570938107|0.2738321617232976|1.88|151.0|25|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.893310546875 2 634.893503 1267.77245 0.63445 0.00040281 -0.88408 -0.0005613 -0.24963 -0.00015849 634.8926110111565 98.36 0.48264 101.85 101.48 101.96 3.4897 106 65 2 0 0 0 0.61292 1 24070 24070 4.897 2.1618 1 296180 35292 13268 22502 22513 40475 40475 0.14927834371087556 RGNLVLLRVQT 11 Unmodified _RGNLVLLRVQT_ 0 0 0 L1MEf_dup4129|chr6:32861032-32861486:+|1.0061912570938107|0.2738321617232976|1.88|151.0|25|3|anti-sense L1MEf_dup4129|chr6:32861032-32861486:+|1.0061912570938107|0.2738321617232976|1.88|151.0|25|3|anti-sense L1MEf_dup4129|chr6:32861032-32861486:+|1.0061912570938107|0.2738321617232976|1.88|151.0|25|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.8928833007812 2 634.893503 1267.77245 0.62024 0.00039379 -0.66753 -0.00042381 -0.04729 -3.0024E-05 634.8927306876578 97.886 0.14151 101.79 101.67 101.81 3.9022 28 18 2 0 0 0 0.61292 1 23188 23188 4.897 2.3985 1 327010 35293 13268 22502 22513 40476 40476 0.14927834371087556 RGNQRELAR 9 Unmodified _RGNQRELAR_ 0 0 0 ENST00000486144.1_1_15:44084574-44085282:+|nuORF;ENSG00000140264|ENST00000249786|SERF2;ENSG00000172058|ENST00000317633|SERF1A;ENSG00000205572|ENST00000380750|SERF1B;nc|ENSG00000140264|P84101-3|SERF2;nc|ENSG00000140264|P84101-2|SERF2 ENST00000486144.1_1_15:44084574-44085282:+|nuORF ENST00000486144.1_1_15:44084574-44085282:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 550.3076171875 2 550.307595 1098.60064 -0.2049 -0.00011276 0.079811 4.3921E-05 -0.12509 -6.8839E-05 550.3076442901072 13.027 0.18807 13.027 12.944 13.132 0 29 17 3 0 0 0 0.47197 1 277 277 3.5965 1.7523 1 75283 35294 3165 22503 22514 40477 40477 0.05528102403400226 RGNRGWEWG 9 Unmodified _RGNRGWEWG_ 0 0 0 REV__L1MB4_dup291|chr1:114492333-114493432:-|1.1572891123823967|0.0111481440984869|6.7|151.0|43|3|sense REV__L1MB4_dup291|chr1:114492333-114493432:-|1.1572891123823967|0.0111481440984869|6.7|151.0|43|3|sense MSMS UPN48_class_I_Rep_1 5 559.2688598632812 2 559.267939 1116.52132 NaN NaN NaN NaN NaN NaN NaN 19.561 1 23.098 22.598 23.598 3.5378 0 0 0 0.39428 1 1504 1504 2.0598 0 1 + 35295 25958 22504 22515 40478 40478 -0.032275445507366385 RGNRYRRLERW 11 Unmodified _RGNRYRRLERW_ 0 0 0 MLT1J2-int_dup251|chr6:149710544-149711109:+|1.1629421245973062|0.015857440987846|6.2|151.0|11|2|sense MLT1J2-int_dup251|chr6:149710544-149711109:+|1.1629421245973062|0.015857440987846|6.2|151.0|11|2|sense MLT1J2-int_dup251|chr6:149710544-149711109:+|1.1629421245973062|0.015857440987846|6.2|151.0|11|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 521.1353149414062 3 521.290546 1560.84981 0.26343 0.00013732 1.4348 0.00074797 1.6983 0.00088529 521.6256961438075 64.163 0.056259 64.163 64.111 64.167 0 5 4 2 0 0 0 22.551 1 14418 14418 0.094841 0.094841 1 73458 35296 16474 22505 22516 40479 40479 0.09181865359960284 RGNSLAINI 9 Unmodified _RGNSLAINI_ 0 0 0 REV__MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|19|2|sense REV__MER50-int_dup251|chr9:92985778-92987150:-|2.493033788398564|0.0256773646904705|6.6|151.0|19|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.27740478515625 2 479.277441 956.540328 0.23134 0.00011088 -0.16611 -7.9614E-05 0.065231 3.1264E-05 479.2772646618646 87.586 0.64895 91.314 91.038 91.687 3.7279 188 75 3 0 0 0 0.50582 1 20882 20882 0 0 1 798370 + 35297 31377 22506 22517 40480 40480 0.060319920202914545 RGPHVVLW 8 Unmodified _RGPHVVLW_ 0 0 0 ENSG00000163449|ENST00000437356|TMEM169 ENSG00000163449|ENST00000437356|TMEM169 ENSG00000163449|ENST00000437356|TMEM169 MSMS UPN46_class_I_Rep_3 1 482.2793273925781 2 482.279786 962.54502 NaN NaN NaN NaN NaN NaN NaN 67.282 1 67.282 66.782 67.782 0 0 0 0 0.40738 1 15308 15308 0.79363 0 1 35298 4001 22507 22518 40481 40481 0.06224920953752644 RGPLKCIHCC 10 Unmodified _RGPLKCIHCC_ 0 0 0 REV__ENSG00000162694|ENST00000370114|EXTL2 REV__ENSG00000162694|ENST00000370114|EXTL2 MSMS UPN47_class_I_Rep_3 4 565.221435546875 2 565.275006 1128.53546 NaN NaN NaN NaN NaN NaN NaN 117.96 1 121.38 120.88 121.88 3.4238 0 0 0 0.53105 1 29078 29078 0 0 1 + 35299 19938 22508 22519 40482 40482 -0.023666747099241547 RGPQALRW 8 Unmodified _RGPQALRW_ 0 0 0 L1MEg_dup1145|chr1:246584808-246585254:-|1.048869413170849|0.0129305480524021|6.34|151.0|11|3|sense L1MEg_dup1145|chr1:246584808-246585254:-|1.048869413170849|0.0129305480524021|6.34|151.0|11|3|sense L1MEg_dup1145|chr1:246584808-246585254:-|1.048869413170849|0.0129305480524021|6.34|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 492.32830810546875 2 492.280318 982.546083 NaN NaN NaN NaN NaN NaN NaN 83.271 1 83.271 82.771 83.771 0 0 0 0 0.40746 1 19770 19770 0.69038 0 1 35300 13354 22509 22520 40483 40483 0.05411135322640348 RGPRGKAT 8 Unmodified _RGPRGKAT_ 0 0 0 MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 421.75128173828125 2 421.751393 841.488233 0.097838 4.1263E-05 -0.049554 -2.0899E-05 0.048284 2.0364E-05 421.7512790703048 84.216 0.65636 84.216 83.897 84.553 0 149 65 4 0 0 0 0.82752 3 20073 20003;20039;20073 5.2307 0 1 2429200 35301 16452 22510 22521 40484;40485;40486 40486 0.06114873397223164 RGPRGKAT 8 Unmodified _RGPRGKAT_ 0 0 0 MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 421.75140380859375 2 421.751393 841.488233 0.030413 1.2827E-05 -0.093322 -3.9359E-05 -0.062909 -2.6532E-05 421.75128757832715 81.017 0.89459 84.504 84.187 85.082 3.4874 203 93 3 0 0 0 0.82752 2 20172 20172;20209 5.2307 0 1 574670 35302 16452 22510 22521 40487;40488 40487 0.06114873397223164 RGPRGKAT 8 Unmodified _RGPRGKAT_ 0 0 0 MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 421.7513122558594 2 421.751393 841.488233 0.078166 3.2967E-05 -0.13852 -5.8421E-05 -0.060354 -2.5454E-05 421.75129288766556 80.673 0.5966 84.318 84.09 84.686 3.6446 125 82 2 0 0 0 0.82752 2 19103 19103;19160 2.5775 0 1 1819300 35303 16452 22510 22521 40489;40490 40489 0.06114873397223164 RGPRGKAT 8 Unmodified _RGPRGKAT_ 0 0 0 MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MLT1I_dup514|chr1:155456862-155457212:+|1.2476832223946344|0.0119606463813926|6.7|150.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 421.7512512207031 2 421.751393 841.488233 0.14471 6.1033E-05 -0.24418 -0.00010298 -0.099468 -4.1951E-05 421.7512107607285 80.717 0.47466 84.381 84.14 84.615 3.6635 110 61 3 0 0 0 0.82752 1 19089 19089 5.2307 0 1 948360 35304 16452 22510 22521 40491 40491 0.06114873397223164 RGPRGTYCCSW 11 Unmodified _RGPRGTYCCSW_ 0 0 0 REV__MER31-int_dup1058|chr22:19943906-19944253:-|1.8602905542913184|0.1737047456085477|3.42|151.0|3|1|sense REV__MER31-int_dup1058|chr22:19943906-19944253:-|1.8602905542913184|0.1737047456085477|3.42|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 643.281005859375 2 643.281874 1284.5492 0.39352 0.00025315 -1.1636 -0.00074854 -0.7701 -0.00049539 643.2809560189033 68.63 0.30437 71.899 71.717 72.021 3.2696 32 27 2 0 0 0 0.67264 1 16589 16589 1.1933 0.735 1 75236 + 35305 31253 22511 22522 40492 40492 -0.08169725677180395 RGPRHQVG 8 Unmodified _RGPRHQVG_ 0 0 0 REV__AluSz_dup66987|chr12:48928474-48928778:-|1.2435940580295612|0.3475950933558134|1.84|151.0|5|2|sense REV__AluSz_dup66987|chr12:48928474-48928778:-|1.2435940580295612|0.3475950933558134|1.84|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 453.75384521484375 2 453.754467 905.494381 -0.51419 -0.00023332 -0.80262 -0.00036419 -1.3168 -0.00059751 453.754017588062 12.666 0.26925 16.055 15.958 16.227 3.3883 65 32 3 0 0 0 0.82752 1 122 122 8.5933 0 1 82562 + 35306 17207 22512 22523 40493 40493 0.03785391628753132 RGPTLELRQVC 11 Unmodified _RGPTLELRQVC_ 0 0 0 ENSG00000256525|ENST00000539111|POLG2 ENSG00000256525|ENST00000539111|POLG2 ENSG00000256525|ENST00000539111|POLG2 MSMS UPN48_class_I_Rep_1 5 636.3472900390625 2 636.348071 1270.68159 NaN NaN NaN NaN NaN NaN NaN 62.552 1 66.015 65.515 66.515 3.4625 0 0 0 0.38417 1 14009 14009 1.1933 0 1 35307 5766 22513 22524 40494 40494 0.05707622331283346 RGQGVQRR 8 Unmodified _RGQGVQRR_ 0 0 0 REV__nc|ENSG00000187642|Q5SV97-2|PERM1 REV__nc|ENSG00000187642|Q5SV97-2|PERM1 MSMS UPN48_class_I_Rep_2 6 478.7781677246094 2 478.778474 955.542394 NaN NaN NaN NaN NaN NaN NaN 33.685 1 37.346 36.846 37.846 3.6607 0 0 0 0.40746 1 5346 5346 0.69038 0 1 + 35308 20936 22514 22525 40495 40495 0.06284465548787921 RGQPRQNWKK 10 Unmodified _RGQPRQNWKK_ 0 0 0 ENST00000274140.9_1_5:10435413-10435635:+|nuORF ENST00000274140.9_1_5:10435413-10435635:+|nuORF ENST00000274140.9_1_5:10435413-10435635:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 432.88494873046875 3 433.246055 1296.71634 -0.45593 -0.00019753 0.025668 1.112E-05 -0.43027 -0.00018641 433.2459548286746 21.536 1.6254 25.21 24.8 26.425 3.6749 491 164 4 0 0 0 0.84575 1 2330 2330 1.9064 1.9064 1 450480 35309 6017 22515 22526 40496 40496 0.07984626254233262 RGRAVRAVH 9 Unmodified _RGRAVRAVH_ 0 0 0 ENST00000368408.3_1_1:155051524-155058895:+|nuORF ENST00000368408.3_1_1:155051524-155058895:+|nuORF ENST00000368408.3_1_1:155051524-155058895:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 511.47137451171875 2 511.309941 1020.60533 0.29398 0.00015032 -2.3168 -0.0011846 -2.0228 -0.0010343 511.3086369721208 108.04 0.080879 111.72 111.67 111.75 3.6813 10 7 2 0 0 0 0.12034 1 25527 25527 7.2892 1.5288 1 628060 35310 6365 22516 22527 40497 40497 0.09585031336837346 RGRAVRPH 8 Unmodified _RGRAVRPH_ 0 0 0 REV__L1ME3Cz_dup2042|chr3:11572389-11572836:-|1.1112800411118051|0.1624444727000156|2.77|151.0|6|2|sense REV__L1ME3Cz_dup2042|chr3:11572389-11572836:-|1.1112800411118051|0.1624444727000156|2.77|151.0|6|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 474.2823486328125 2 474.783559 947.552565 0.2339 0.00011105 0.79525 0.00037757 1.0291 0.00048862 474.783793034974 108.98 0.24313 112.58 112.55 112.79 3.6046 20 17 2 0 0 0 0.72333 1 26848 26848 8.5933 8.5933 1 18257000 + 35311 28109 22517 22528 40498 40498 0.07669073274018956 RGREDWHFA 9 Unmodified _RGREDWHFA_ 0 0 0 REV__ENSG00000156381|ENST00000286918|ANKRD9 REV__ENSG00000156381|ENST00000286918|ANKRD9 MSMS UPN47_class_I_Rep_3 4 587.27978515625 2 587.281046 1172.54754 NaN NaN NaN NaN NaN NaN NaN 28.613 1 31.947 31.447 32.447 3.3337 0 0 0 0.39326 1 4512 4512 2.3027 0.4585 1 + 35312 19793 22518 22529 40499 40499 -0.03183275379251427 RGREKATTI 9 Unmodified _RGREKATTI_ 0 0 0 REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 516.301513671875 2 516.301447 1030.58834 NaN NaN NaN NaN NaN NaN NaN 69.023 1 72.478 71.978 72.978 3.4548 0 0 0 0.38784 1 15981 15981 3.5965 1.2938 1 + 35313 24207 22519 22530 40500 40500 0.07427065940350985 RGREKATTI 9 Unmodified _RGREKATTI_ 0 0 0 REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 516.3016357421875 2 516.301447 1030.58834 NaN NaN NaN NaN NaN NaN NaN 68.794 1 72.303 71.803 72.803 3.5083 0 0 0 0.38784 1 15890 15890 3.5965 1.5367 1 + 35314 24207 22519 22530 40501 40501 0.07427065940350985 RGREKATTI 9 Unmodified _RGREKATTI_ 0 0 0 REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 516.301025390625 2 516.301447 1030.58834 NaN NaN NaN NaN NaN NaN NaN 68.676 1 72.186 71.686 72.686 3.5094 0 0 0 0.38784 1 15764 15764 3.5965 1.2938 1 + 35315 24207 22519 22530 40502 40502 0.07427065940350985 RGREKATTI 9 Unmodified _RGREKATTI_ 0 0 0 REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense REV__L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 516.3013916015625 2 516.301447 1030.58834 NaN NaN NaN NaN NaN NaN NaN 68.828 1 72.338 71.838 72.838 3.5094 0 0 0 0.38784 1 15809 15809 3.5965 1.2938 1 + 35316 24207 22519 22530 40503 40503 0.07427065940350985 RGRGLRPIKG 10 Unmodified _RGRGLRPIKG_ 0 0 0 ENST00000440001.2_1_6:111805042-111805285:+|nuORF ENST00000440001.2_1_6:111805042-111805285:+|nuORF ENST00000440001.2_1_6:111805042-111805285:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 555.8554077148438 2 555.354348 1108.69414 0.41885 0.00023261 -1.1743 -0.00065213 -0.75541 -0.00041952 555.3537239141212 95.827 0.03595 95.827 95.81 95.846 0 6 4 2 0 0 0 0.54078 1 23283 23283 6.7232 6.7232 1 441480 35317 6773 22520 22531 40504 40504 0.14414446576483897 RGRGLRPIKG 10 Unmodified _RGRGLRPIKG_ 0 0 0 ENST00000440001.2_1_6:111805042-111805285:+|nuORF ENST00000440001.2_1_6:111805042-111805285:+|nuORF ENST00000440001.2_1_6:111805042-111805285:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 555.3540649414062 2 555.354348 1108.69414 0.49577 0.00027533 -1.2035 -0.00066834 -0.70769 -0.00039302 555.3537510828354 91.644 0.13098 95.4 95.285 95.416 3.7554 29 18 2 0 0 0 0.54078 1 21808 21808 6.7232 4.1457 1 994850 35318 6773 22520 22531 40505 40505 0.14414446576483897 RGRGLRPIKG 10 Unmodified _RGRGLRPIKG_ 0 0 0 ENST00000440001.2_1_6:111805042-111805285:+|nuORF ENST00000440001.2_1_6:111805042-111805285:+|nuORF ENST00000440001.2_1_6:111805042-111805285:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 555.354348 1108.69414 0.48329 0.0002684 -1.3586 -0.00075451 -0.87532 -0.00048611 555.3535566849135 92.12 0.081879 95.746 95.694 95.776 3.626 0.088523 -0.00013575 NaN 6.7232 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 439150 35319 6773 22520 22531 0.14414446576483897 RGRGPTKA 8 Unmodified _RGRGPTKA_ 0 0 0 REV__ENST00000296215.7_2_1:38019675-38019861:-|nuORF REV__ENST00000296215.7_2_1:38019675-38019861:-|nuORF MSMS UPN46_class_I_Rep_3 1 421.75103759765625 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 25.061 1 25.061 24.561 25.561 0 0 0 0 0.40157 1 3381 3381 7.2892 0 1 + 35320 21652 22521 22532 40506 40506 0.06114873397223164 RGRGVNLA 8 Unmodified _RGRGVNLA_ 0 0 0 Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 421.7509460449219 2 421.751393 841.488233 0.098583 4.1578E-05 -0.12471 -5.2595E-05 -0.026124 -1.1018E-05 421.75127267833096 84.608 0.14054 84.608 84.553 84.693 0 23 14 2 0 0 0 0.82752 1 20151 20151 0.69038 0 1 208060 35321 33318 22522 22533 40507 40507 0.06114873397211795 RGRGVNLA 8 Unmodified _RGRGVNLA_ 0 0 0 Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 421.751393 841.488233 0.098583 4.1578E-05 -0.12471 -5.2595E-05 -0.026124 -1.1018E-05 421.75127267833096 84.608 0.14054 84.608 84.553 84.693 0 0.1072 -0.00051445 NaN 0.69038 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 208060 35322 33318 22522 22533 0.06114873397211795 RGRGVNLA 8 Unmodified _RGRGVNLA_ 0 0 0 Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 421.751393 841.488233 -0.47306 -0.00019951 0.41146 0.00017353 -0.061603 -2.5981E-05 421.7514878202097 81.11 0.86549 84.494 84.128 84.993 3.3839 -0.0061906 -6.2201E-05 NaN 0.69038 219 106 3 NaN NaN NaN NaN 0 NaN NaN 0 673580 35323 33318 22522 22533 0.06114873397211795 RGRGVNLA 8 Unmodified _RGRGVNLA_ 0 0 0 Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense Tigger2_dup336|chr2:68166191-68167977:-|3.0958783333396918|0.1461699497946076|4.4|151.0|93|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 421.751393 841.488233 -0.56157 -0.00023684 0.55042 0.00023214 -0.011151 -4.7029E-06 421.7515639802951 81.076 0.727 84.4 84.122 84.849 3.3231 -0.10101 5.5016E-05 NaN 0.69038 211 85 3 NaN NaN NaN NaN 0 NaN NaN 0 753120 35324 33318 22522 22533 0.06114873397211795 RGRGVRAA 8 Unmodified _RGRGVRAA_ 0 0 0 ENST00000302327.3_1_4:184426162-184426267:+|nuORF ENST00000302327.3_1_4:184426162-184426267:+|nuORF ENST00000302327.3_1_4:184426162-184426267:+|nuORF MSMS UPN48_class_I_Rep_2 6 421.8231506347656 2 421.75701 841.499467 NaN NaN NaN NaN NaN NaN NaN 74.884 1 78.474 77.974 78.974 3.59 0 0 0 0.40746 1 17638 17638 0.69038 0 1 35325 6079 22523 22534 40508 40508 0.07237695491346585 RGRHVRCF 8 Unmodified _RGRHVRCF_ 0 0 0 REV__ENST00000482165.1_1_10:1169988-1170211:+|nuORF REV__ENST00000482165.1_1_10:1169988-1170211:+|nuORF MSMS UPN48_class_I_Rep_1 5 515.7987060546875 2 515.777419 1029.54029 NaN NaN NaN NaN NaN NaN NaN 33.585 1 37.105 36.605 37.605 3.5201 0 0 0 0.40604 1 5258 5258 2.5775 1.7838 1 + 35326 22572 22524 22535 40509 40509 0.02669713539330587 RGRIPFFV 8 Unmodified _RGRIPFFV_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS UPN46_class_I_Rep_3 1 496.2953796386719 2 496.295436 990.57632 0.054451 2.7024E-05 0.027744 1.3769E-05 0.082195 4.0793E-05 496.29553390443095 30.393 0.065907 30.393 30.36 30.426 0 6 4 2 0 0 0 0.82752 1 4947 4947 0.79363 0 1 214050 35327 2860 22525 22536 40510 40510 0.0806549398784 RGRKHLKTQ 9 Unmodified _RGRKHLKTQ_ 0 0 0 REV__L1PA7_dup421|chr1:111681259-111686272:+|14.260614469451143|0.2002018903522509|6.15|151.0|45|2|sense REV__L1PA7_dup421|chr1:111681259-111686272:+|14.260614469451143|0.2002018903522509|6.15|151.0|45|2|sense MSMS UPN48_class_I_Rep_1 5 562.8284912109375 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 57.36 1 60.854 60.354 61.354 3.4942 0 0 0 0.39518 1 12421 12421 1.8442 0.36234 1 + 35328 30098 22526 22537 40511 40511 0.11697856196838075 RGRKPKKMPK 10 Unmodified _RGRKPKKMPK_ 0 0 0 L1M4c_dup492|chr3:5155035-5155909:-|1.9932804251775875|0.0920012828122823|4.44|151.0|22|3|sense L1M4c_dup492|chr3:5155035-5155909:-|1.9932804251775875|0.0920012828122823|4.44|151.0|22|3|sense L1M4c_dup492|chr3:5155035-5155909:-|1.9932804251775875|0.0920012828122823|4.44|151.0|22|3|sense MSMS UPN47_class_I_Rep_3 4 613.1799926757812 2 613.387334 1224.76011 NaN NaN NaN NaN NaN NaN NaN 12.267 1 15.643 15.143 16.143 3.3753 0 0 0 0.53105 1 50 50 0.40072 0 1 35329 9068 22527 22538 40512 40512 0.15672519427039333 RGRKPKKMPK 10 Unmodified _RGRKPKKMPK_ 0 0 0 L1M4c_dup492|chr3:5155035-5155909:-|1.9932804251775875|0.0920012828122823|4.44|151.0|22|3|sense L1M4c_dup492|chr3:5155035-5155909:-|1.9932804251775875|0.0920012828122823|4.44|151.0|22|3|sense L1M4c_dup492|chr3:5155035-5155909:-|1.9932804251775875|0.0920012828122823|4.44|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 613.1802368164062 2 613.387334 1224.76011 NaN NaN NaN NaN NaN NaN NaN 12.15 1 15.806 15.306 16.306 3.6552 0 0 0 0.53105 1 28 28 0.40072 0.050084 1 35330 9068 22527 22538 40513 40513 0.15672519427039333 RGRLHRPV 8 Unmodified _RGRLHRPV_ 0 0 0 REV__nc|ENSG00000109689|Q9P246-2|STIM2 REV__nc|ENSG00000109689|Q9P246-2|STIM2 MSMS UPN48_class_I_Rep_2 6 495.80718994140625 2 495.807034 989.599515 NaN NaN NaN NaN NaN NaN NaN 81.824 1 85.48 84.98 85.98 3.6567 0 0 0 0.40746 1 19430 19430 0.69038 0 1 + 35331 31958 22528 22539 40514 40514 0.10429932825161359 RGRNLYERPK 10 Unmodified _RGRNLYERPK_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|92|3|sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|92|3|sense MSMS UPN46_class_I_Rep_3 1 430.2561950683594 3 430.245944 1287.716 NaN NaN NaN NaN NaN NaN NaN 43.182 1 43.182 42.682 43.682 0 0 0 0 0.53105 1 8600 8600 0.69767 0.19171 1 + 35332 25390 22529 22540 40515 40515 0.08365206534381286 RGRNRQKSL 9 Unmodified _RGRNRQKSL_ 0 0 0 L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|60|2|sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|60|2|sense L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|60|2|sense MSMS UPN47_class_I_Rep_2 3 557.8325805664062 2 557.831237 1113.64792 NaN NaN NaN NaN NaN NaN NaN 15.719 1 19.106 18.606 19.606 3.3864 0 0 0 0.38639 1 882 882 3.9444 0 1 35333 14864 22530 22541 40516 40516 0.09564381674408651 RGRNVKVY 8 Unmodified _RGRNVKVY_ 0 0 0 HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|16|3|sense HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|16|3|sense HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 38.801 1 38.801 38.301 39.301 0 0 0 0 0.40625 1 7414 7414 2.3027 0.82083 1 35334 7782 22531 22542 40517 40517 0.0766340449412155 RGRPPPVK 8 Unmodified _RGRPPPVK_ 0 0 0 REV__L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense REV__L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense MSMS UPN48_class_I_Rep_2 6 453.7845764160156 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 116.89 1 120.55 120.05 121.05 3.6607 0 0 0 0.40746 1 28005 28005 0.69038 0 1 + 35335 30338 22532 22543 40518 40518 0.09936323328031449 RGRQPHLP 8 Unmodified _RGRQPHLP_ 0 0 0 REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 481.2784423828125 2 480.777942 959.541332 -0.66276 -0.00031864 -1.1728 -0.00056388 -1.8356 -0.00088252 480.77738151023016 21.727 0.50122 25.076 24.842 25.343 3.3496 81 48 2 0 0 0 0.82752 1 2433 2433 0.79363 0 1 63502 + 35336 21629 22533 22544 40519 40519 0.05994251179879484 RGRQPPQL 8 Unmodified _RGRQPPQL_ 0 0 0 REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 476.2768249511719 2 476.277775 950.540997 -0.39017 -0.00018583 -0.82381 -0.00039236 -1.214 -0.00057819 476.2773471340312 13.491 0.33616 16.948 16.858 17.194 3.457 54 40 2 0 0 0 0.82752 1 336 336 0.69038 0 1 46185 + 35337 20110 22534 22545 40520 40520 0.06374831460027508 RGRQPPQL 8 Unmodified _RGRQPPQL_ 0 0 0 REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 476.2772216796875 2 476.277775 950.540997 -0.26396 -0.00012572 -1.1066 -0.00052706 -1.3706 -0.00065278 476.2772019824582 13.577 0.22118 16.965 16.878 17.1 3.388 41 26 2 0 0 0 0.82752 1 357 357 0.69038 0 1 34185 + 35338 20110 22534 22545 40521 40521 0.06374831460027508 RGRQPPQL 8 Unmodified _RGRQPPQL_ 0 0 0 REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 476.277099609375 2 476.277775 950.540997 -0.83422 -0.00039732 -0.26751 -0.00012741 -1.1017 -0.00052473 476.2776076583918 13.631 0.27862 17.004 16.92 17.199 3.3734 45 32 2 0 0 0 0.82752 1 358 358 0.69038 0 1 36527 + 35339 20110 22534 22545 40522 40522 0.06374831460027508 RGRQPPQL 8 Unmodified _RGRQPPQL_ 0 0 0 REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 476.277775 950.540997 -0.39017 -0.00018583 -0.82381 -0.00039236 -1.214 -0.00057819 476.2773471340312 13.491 0.33616 16.948 16.858 17.194 3.457 -0.024574 -0.00011816 NaN 0.69038 54 40 2 NaN NaN NaN NaN 0 NaN NaN 0 46185 + 35340 20110 22534 22545 0.06374831460027508 RGRQPPQL 8 Unmodified _RGRQPPQL_ 0 0 0 REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 476.277775 950.540997 -0.26396 -0.00012572 -1.1066 -0.00052706 -1.3706 -0.00065278 476.2772019824582 13.577 0.22118 16.965 16.878 17.1 3.388 -0.0073194 -0.00038757 NaN 0.69038 41 26 2 NaN NaN NaN NaN 0 NaN NaN 0 34185 + 35341 20110 22534 22545 0.06374831460027508 RGRQPPQL 8 Unmodified _RGRQPPQL_ 0 0 0 REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron REV__ENSG00000165233.18,CARD19,chr9,+,I1.1,93096353,93107673|50|15.18|1|intron MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 476.277775 950.540997 -0.83422 -0.00039732 -0.26751 -0.00012741 -1.1017 -0.00052473 476.2776076583918 13.631 0.27862 17.004 16.92 17.199 3.3734 0.031894 0.00041174 NaN 0.69038 45 32 2 NaN NaN NaN NaN 0 NaN NaN 0 36527 + 35342 20110 22534 22545 0.06374831460027508 RGRQRIHLPL 10 Unmodified _RGRQRIHLPL_ 0 0 0 ENST00000550722.5_1_12:112688073-112690246:-|nuORF ENST00000550722.5_1_12:112688073-112690246:-|nuORF ENST00000550722.5_1_12:112688073-112690246:-|nuORF MSMS UPN48_class_I_Rep_2 6 623.3880615234375 2 623.38618 1244.75781 NaN NaN NaN NaN NaN NaN NaN 109.26 1 112.93 112.43 113.43 3.6715 0 0 0 0.53105 1 26002 26002 3.2813 0.28607 1 35343 7397 22535 22546 40523 40523 0.14521807013602483 RGRRARAKPQA 11 Unmodified _RGRRARAKPQA_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B nc|ENSG00000116514|Q6ZMZ0-2|RNF19B nc|ENSG00000116514|Q6ZMZ0-2|RNF19B MSMS UPN47_class_I_Rep_1 2 633.8711547851562 2 633.884336 1265.75412 NaN NaN NaN NaN NaN NaN NaN 86.327 1 89.943 89.443 90.443 3.6153 0 0 0 0.38417 1 21564 21564 0.30703 0 1 35344 2186 22536 22547 40524 40524 0.13187137239742697 RGRRHRHA 8 Unmodified _RGRRHRHA_ 0 0 0 ENST00000379593.1_1_X:20159744-20159861:-|nuORF ENST00000379593.1_1_X:20159744-20159861:-|nuORF ENST00000379593.1_1_X:20159744-20159861:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 523.3036499023438 2 523.302981 1044.59141 0.31427 0.00016446 1.3431 0.00070285 1.6574 0.0008673 523.3034544618384 80.448 0.21747 80.448 80.269 80.487 0 35 20 3 0 0 0 0.82752 1 18960 18960 2.3027 0 1 189620 35345 6479 22537 22548 40525 40525 0.07089798628408062 RGRRPATAP 9 Unmodified _RGRRPATAP_ 0 0 0 REV__ENST00000500447.1_1_11:567500-568398:-|nuORF REV__ENST00000500447.1_1_11:567500-568398:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 491.7960510253906 2 491.288674 980.562795 0.18619 9.1473E-05 3.2578 0.0016005 3.4439 0.001692 491.28913265228385 53.518 1.0287 57.037 56.544 57.573 3.5192 144 73 3 0 0 0 0.47197 1 11154 11154 3.5965 1.019 1 680260 + 35346 22686 22538 22549 40526 40526 0.07173636208597145 RGRRRHKQ 8 Unmodified _RGRRRHKQ_ 0 0 0 REV__ENST00000547697.6_1_12:51844670-51855120:+|nuORF REV__ENST00000547697.6_1_12:51844670-51855120:+|nuORF MSMS UPN48_class_I_Rep_2 6 547.3319091796875 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 84.11 1 87.804 87.304 88.304 3.6937 0 0 0 0.40625 1 20014 20014 2.3027 0 1 + 35347 17678 22539 22550 40527 40527 0.10630640833983307 RGRRRREC 8 Unmodified _RGRRRREC_ 0 0 0 REV__ENST00000339382.3_2_8:30890609-30891086:-|nuORF REV__ENST00000339382.3_2_8:30890609-30891086:-|nuORF MSMS UPN47_class_I_Rep_2 3 544.7601318359375 2 544.801957 1087.58936 NaN NaN NaN NaN NaN NaN NaN 20.375 1 23.782 23.282 24.282 3.4074 0 0 0 0.40643 1 2101 2101 2.0598 0 1 + 35348 21809 22540 22551 40528 40528 0.04907001828291868 RGRRRRLRNL 10 Unmodified _RGRRRRLRNL_ 0 0 0 REV__Tigger2a_dup1802|chr9:85650251-85650662:+|2.677657353147562|0.1245578465505341|4.43|151.0|31|3|anti-sense REV__Tigger2a_dup1802|chr9:85650251-85650662:+|2.677657353147562|0.1245578465505341|4.43|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_1 5 451.6243591308594 3 451.62386 1351.84975 NaN NaN NaN NaN NaN NaN NaN 44.979 1 48.495 47.995 48.995 3.5162 0 0 0 0.53105 1 8624 8624 0.69767 0 1 + 35349 32683 22541 22552 40529 40529 0.18789910150644573 RGRTIAPA 8 Unmodified _RGRTIAPA_ 0 0 0 REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF MSMS UPN48_class_I_Rep_2 6 421.2535705566406 2 421.253769 840.492984 NaN NaN NaN NaN NaN NaN NaN 74.97 1 78.56 78.06 79.06 3.59 0 0 0 0.40604 1 17663 17663 2.5775 0 1 + 35350 18986 22542 22553 40530 40530 0.06635757539970655 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.8818969726562 2 599.380563 1196.74657 0.51945 0.00031135 -0.77191 -0.00046267 -0.25247 -0.00015132 599.8814122069671 95.42 0.3943 99.185 99.005 99.399 3.7648 67 51 2 0 0 0 0.67519 1 23653 23653 0.96228 0.43751 1 256030 + 35351 23658 22543 22554 40531 40531 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.380126953125 2 599.380563 1196.74657 0.63462 0.00038038 -0.82034 -0.0004917 -0.18572 -0.00011132 599.3801386160488 95.431 0.43913 98.906 98.686 99.125 3.4753 110 60 2 0 0 0 0.67519 1 23527 23527 0.96228 0.43751 1 585460 + 35352 23658 22543 22554 40532 40532 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 599.3802490234375 2 599.380563 1196.74657 0.50877 0.00030495 -0.62496 -0.00037459 -0.11619 -6.9643E-05 599.3802595505995 95.565 0.32413 98.974 98.726 99.051 3.4095 62 44 2 0 0 0 0.65821 1 23765 23765 2.4985 0.43874 1 214340 + 35353 23658 22543 22554 40533 40533 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 599.3803100585938 2 599.380563 1196.74657 0.41423 0.00024828 -0.43784 -0.00026244 -0.023612 -1.4153E-05 599.3802989141963 95.309 0.47835 98.925 98.541 99.019 3.6167 139 59 3 0 0 0 0.61292 1 22924 22924 4.897 0.36815 1 902450 + 35354 23658 22543 22554 40534 40534 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 599.3803100585938 2 599.380563 1196.74657 0.48591 0.00029124 -0.61811 -0.00037048 -0.1322 -7.924E-05 599.3802370853945 95.114 0.46881 98.895 98.756 99.224 3.7804 137 65 3 0 0 0 0.48412 3 22613 22613;22642;22669 8.1555 2.4985 1 1816100 + 35355 23658 22543 22554 40535;40536;40537 40535 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 599.380563 1196.74657 0.51932 0.00031127 -0.89789 -0.00053818 -0.37857 -0.00022691 599.3803489154147 95.173 0.080956 98.924 98.853 98.934 3.7508 -0.034337 -0.00038516 NaN 8.1555 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 60131 + 35356 23658 22543 22554 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 599.380563 1196.74657 0.63462 0.00038038 -0.82034 -0.0004917 -0.18572 -0.00011132 599.3801386160488 95.431 0.43913 98.906 98.686 99.125 3.4753 -0.052124 -0.00029219 NaN 8.1555 110 60 2 NaN NaN NaN NaN 0 NaN NaN 0 585460 + 35357 23658 22543 22554 0.15606984919463684 RGRTRLGVLGL 11 Unmodified _RGRTRLGVLGL_ 0 0 0 REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense REV__HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|147|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 599.380563 1196.74657 0.53574 0.00032111 -0.56387 -0.00033797 -0.028133 -1.6862E-05 599.3802867593962 95.05 0.67113 98.951 98.641 99.312 3.9016 -0.0071726 1.5253E-05 NaN 8.1555 202 89 3 NaN NaN NaN NaN 0 NaN NaN 0 764480 + 35358 23658 22543 22554 0.15606984919463684 RGRTVVFA 8 Unmodified _RGRTVVFA_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MSMS UPN47_class_I_Rep_1 2 453.2088928222656 2 453.269419 904.524284 NaN NaN NaN NaN NaN NaN NaN 91.067 1 94.772 94.272 95.272 3.7053 0 0 0 0.40738 1 22738 22738 0.79363 0 1 35359 2081 22544 22555 40538 40538 0.0682033057407807 RGRVAIVSL 9 Unmodified _RGRVAIVSL_ 0 0 0 L1P3b_dup57|chr11:73498118-73499999:+|1.358191784949026|0.0167494268641268|6.34|151.0|9|1|sense L1P3b_dup57|chr11:73498118-73499999:+|1.358191784949026|0.0167494268641268|6.34|151.0|9|1|sense L1P3b_dup57|chr11:73498118-73499999:+|1.358191784949026|0.0167494268641268|6.34|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 97.127 1 100.61 100.11 101.11 3.4791 0 0 0 0.39518 1 23854 23854 1.8442 0 1 35360 13549 22545 22556 40539 40539 0.12232861670975126 RGRVYRRRSRP 11 Unmodified _RGRVYRRRSRP_ 0 0 0 REV__ENSG00000166851|ENST00000300093|PLK1 REV__ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS UPN48_class_I_Rep_2 6 487.2933654785156 3 486.95902 1457.85523 0.25338 0.00012339 -0.00064284 -3.1304E-07 0.25274 0.00012307 486.9590269590118 94.095 0.31542 97.871 97.574 97.89 3.7761 65 42 2 0 0 0 0.68478 1 22338 22338 0.094841 0 1 134800 + 35361 20193 22546 22557 40540 40540 0.1446158894243581 RGRVYRRRSRP 11 Unmodified _RGRVYRRRSRP_ 0 0 0 REV__ENSG00000166851|ENST00000300093|PLK1 REV__ENSG00000166851|ENST00000300093|PLK1 MULTI-SECPEP UPN48_class_I_Rep_2 6 487.29339599609375 3 486.95902 1457.85523 0.25394 0.00012366 -0.099137 -4.8276E-05 0.1548 7.5383E-05 486.95881349907864 94.56 0.15491 98.336 98.218 98.373 3.7761 48 21 3 0 0 0 22.551 1 22466 22466 0.094841 0 1 156910 + 35362 20193 22546 22557 40541 40541 0.1446158894243581 RGRVYRRRSRP 11 Unmodified _RGRVYRRRSRP_ 0 0 0 REV__ENSG00000166851|ENST00000300093|PLK1 REV__ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS UPN48_class_I_Rep_3 7 486.9593811035156 3 486.95902 1457.85523 0.23803 0.00011591 0.012788 6.2274E-06 0.25082 0.00012214 486.95886589763495 94.289 0.48986 98.19 97.734 98.224 3.9016 106 69 2 0 0 0 0.68081 1 22305 22305 0.45452 0.45452 1 226760 + 35363 20193 22546 22557 40542 40542 0.1446158894243581 RGSAAFSFVLC 11 Unmodified _RGSAAFSFVLC_ 0 0 0 REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant MSMS UPN48_class_I_Rep_3 7 579.2796020507812 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 68.989 1 72.498 71.998 72.998 3.5094 0 0 0 0.38417 1 15858 15858 2.9952 0.41776 1 + 35364 17503 22547 22558 40543 40543 -0.002108120258526469 RGSGRRRG 8 Unmodified _RGSGRRRG_ 0 0 0 ENST00000481053.5_1_9:139256466-139257898:-|nuORF ENST00000481053.5_1_9:139256466-139257898:-|nuORF ENST00000481053.5_1_9:139256466-139257898:-|nuORF MSMS UPN48_class_I_Rep_3 7 451.26263427734375 2 451.262991 900.511428 NaN NaN NaN NaN NaN NaN NaN 116.12 1 119.75 119.25 120.25 3.6312 0 0 0 0.40746 1 27635 27635 0.69038 0 1 35365 6997 22548 22559 40544 40544 0.05719312234555218 RGSRTATLL 9 Unmodified _RGSRTATLL_ 0 0 0 REV__ENST00000367064.7_1_1:207494902-207495055:+|nuORF REV__ENST00000367064.7_1_1:207494902-207495055:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 487.7920227050781 2 487.790715 973.566878 0.14566 7.1049E-05 0.55184 0.00026918 0.6975 0.00034023 487.79081377900366 74.888 0.54979 78.281 77.882 78.431 3.3937 116 49 3 0 0 0 0.49187 1 18365 18365 1.4819 0.68827 1 115820 + 35366 21922 22549 22560 40545 40545 0.07903680911670108 RGSYVALFGS 10 Unmodified _RGSYVALFGS_ 0 0 0 REV__L1MB3_dup12136|chr12:120872293-120872729:+|1.5284715032437488|0.0069088108609672|7.79|151.0|24|3|anti-sense REV__L1MB3_dup12136|chr12:120872293-120872729:+|1.5284715032437488|0.0069088108609672|7.79|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_3 4 528.7752075195312 2 528.777274 1055.53999 NaN NaN NaN NaN NaN NaN NaN 87.41 1 90.797 90.297 91.297 3.3873 0 0 0 0.53105 1 21901 21901 1.4819 0.68827 1 + 35367 25803 22550 22561 40546 40546 0.01444572300465552 RGTDLSINRIE 11 Unmodified _RGTDLSINRIE_ 0 0 0 REV__MLT1D-int_dup432|chr10:75833536-75835039:-|1.4426971403375757|0.0192105436168634|6.23|150.0|35|3|sense REV__MLT1D-int_dup432|chr10:75833536-75835039:-|1.4426971403375757|0.0192105436168634|6.23|150.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 637.3466796875 2 637.346583 1272.67861 NaN NaN NaN NaN NaN NaN NaN 66.766 1 70.274 69.774 70.774 3.5077 0 0 0 0.38417 1 15190 15190 2.086 0 1 + 35368 31689 22551 22562 40547 40547 0.053180704781198074 RGTELLSLY 9 Unmodified _RGTELLSLY_ 0 0 0 REV__ENSG00000058866.15,DGKG,chr3,-,I12.1,186268918,186272254|79|9.42|5|intron REV__ENSG00000058866.15,DGKG,chr3,-,I12.1,186268918,186272254|79|9.42|5|intron MULTI-SECPEP UPN47_class_I_Rep_1 2 526.2926635742188 2 526.292756 1050.57096 0.23065 0.00012139 -0.25734 -0.00013544 -0.026686 -1.4045E-05 526.292476730533 51.938 0.57926 55.532 55.177 55.756 3.5933 89 37 3 0 0 0 0.050247 1 11509 11509 36.127 1.7253 1 225200 + 35369 17715 22552 22563 40548 40548 0.047697256147330336 RGTELLSLY 9 Unmodified _RGTELLSLY_ 0 0 0 REV__ENSG00000058866.15,DGKG,chr3,-,I12.1,186268918,186272254|79|9.42|5|intron REV__ENSG00000058866.15,DGKG,chr3,-,I12.1,186268918,186272254|79|9.42|5|intron MULTI-MSMS UPN47_class_I_Rep_2 3 526.292724609375 2 526.292756 1050.57096 0.19377 0.00010198 -0.29141 -0.00015337 -0.097641 -5.1388E-05 526.292344037665 52.294 0.63912 55.628 55.238 55.877 3.3332 84 50 3 0 0 0 0.1249 1 11657 11657 29.082 1.4528 1 276240 + 35370 17715 22552 22563 40549 40549 0.047697256147330336 RGTELLSLY 9 Unmodified _RGTELLSLY_ 0 0 0 REV__ENSG00000058866.15,DGKG,chr3,-,I12.1,186268918,186272254|79|9.42|5|intron REV__ENSG00000058866.15,DGKG,chr3,-,I12.1,186268918,186272254|79|9.42|5|intron MULTI-MSMS UPN47_class_I_Rep_3 4 526.29248046875 2 526.292756 1050.57096 0.42424 0.00022327 -0.48863 -0.00025716 -0.064388 -3.3887E-05 526.2921161769625 52.533 0.62166 55.738 55.29 55.911 3.2055 88 55 2 0 0 0 0.24936 1 11808 11808 17.113 0.96379 1 245730 + 35371 17715 22552 22563 40550 40550 0.047697256147330336 RGTLLVTAR 9 Unmodified _RGTLLVTAR_ 0 0 0 L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|58|1|anti-sense L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|58|1|anti-sense L1PREC2_dup448|chr1:211958829-211960762:+|1.4697728438935491|0.0868620953728755|4.08|150.0|58|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 493.2870788574219 2 493.808908 985.603263 -0.34724 -0.00017147 1.9558 0.00096579 1.6086 0.00079432 493.81003370360577 14.873 0.053671 18.348 18.315 18.368 3.475 6 5 2 0 0 0 0.12383 1 670 670 3.2813 1.4371 1 20635 35372 15454 22553 22564 40551 40551 0.10988557808377664 RGTLYTVGGS 10 Unmodified _RGTLYTVGGS_ 0 0 0 L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|71|3|sense L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|71|3|sense L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|71|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 505.5794677734375 2 505.766906 1009.51926 0.20924 0.00010582 -0.23559 -0.00011915 -0.026356 -1.333E-05 505.76667065184387 46.211 0.98137 49.731 49.337 50.318 3.5192 143 65 3 0 0 0 0.56118 1 9155 9155 2.9952 2.9952 1 489660 35373 13809 22554 22565 40552 40552 0.014879819208204026 RGTRPLFQY 9 Unmodified _RGTRPLFQY_ 0 0 0 MLT1A0-int_dup337|chr5:34122085-34123248:+|1.2671476759244478|0.0377910793030876|5.07|150.0|63|3|anti-sense MLT1A0-int_dup337|chr5:34122085-34123248:+|1.2671476759244478|0.0377910793030876|5.07|150.0|63|3|anti-sense MLT1A0-int_dup337|chr5:34122085-34123248:+|1.2671476759244478|0.0377910793030876|5.07|150.0|63|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.8126831054688 2 569.311815 1136.60908 -0.068684 -3.9103E-05 -0.54104 -0.00030802 -0.60972 -0.00034712 569.3115130270448 32.195 0.77121 35.908 35.6 36.371 3.7131 135 65 3 0 0 0 0.45688 1 5579 5579 4.756 0.42677 1 232890 35374 16260 22555 22566 40553 40553 0.046236563200409364 RGVAAMRL 8 Unmodified _RGVAAMRL_ 0 0 0 REV__ENST00000259253.10_1_2:128949029-128949128:+|nuORF REV__ENST00000259253.10_1_2:128949029-128949128:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.2568054199219 2 437.257997 872.501441 NaN NaN NaN NaN NaN NaN NaN 100.65 1 104.26 103.76 104.76 3.6084 0 0 0 0.40625 1 24309 24309 2.3027 0 1 + 35375 21547 22556 22567 40554 40554 0.06008988184953523 RGVAGLRN 8 Unmodified _RGVAGLRN_ 0 0 0 REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|132|3|sense REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|132|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 421.7511291503906 2 421.751393 841.488233 -0.091422 -3.8557E-05 -0.23151 -9.7641E-05 -0.32294 -0.0001362 421.751170912148 79.608 0.5784 83.156 82.788 83.367 3.5487 100 65 2 0 0 0 0.82752 1 19010 19010 2.3027 0 1 148620 + 35376 30471 22557 22568 40555 40555 0.06114873397223164 RGVAGLRN 8 Unmodified _RGVAGLRN_ 0 0 0 REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|132|3|sense REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|132|3|sense MSMS UPN48_class_I_Rep_2 6 421.7509460449219 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 79.521 1 83.154 82.654 83.654 3.6331 0 0 0 0.40746 1 18896 18896 0.69038 0 1 + 35377 30471 22557 22568 40556 40556 0.06114873397223164 RGVAGLRN 8 Unmodified _RGVAGLRN_ 0 0 0 REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|132|3|sense REV__L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|132|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 421.7508850097656 2 421.751393 841.488233 0.14723 6.2095E-05 -0.53515 -0.0002257 -0.38792 -0.00016361 421.7510821736457 79.403 0.57722 83.045 82.824 83.402 3.6423 97 72 2 0 0 0 0.82752 1 18905 18905 0.69038 0 1 177870 + 35378 30471 22557 22568 40557 40557 0.06114873397223164 RGVAGPVR 8 Unmodified _RGVAGPVR_ 0 0 0 L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|358|3|anti-sense L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|358|3|anti-sense L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|358|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 406.24835205078125 2 406.248486 810.48242 0.082136 3.3368E-05 -2.0984 -0.00085248 -2.0163 -0.00081911 406.2483814864942 111.59 0.13409 115.25 115.24 115.37 3.6666 13 10 2 0 0 0 0.82752 1 26550 26550 0.69038 0 1 141190 35379 14500 22558 22569 40558 40558 0.06959774885547176 RGVAVLCT 8 Unmodified _RGVAVLCT_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN48_class_I_Rep_1 5 409.73138427734375 2 409.73128 817.448008 NaN NaN NaN NaN NaN NaN NaN 56.345 1 59.847 59.347 60.347 3.5014 0 0 0 0.40625 1 12115 12115 2.3027 0 1 35380 5346 22559 22570 40559 40559 0.031981906824285034 RGVKKKKLIT 10 Unmodified _RGVKKKKLIT_ 0 0 0 REV__L1MB3_dup3186|chr3:56574812-56576287:-|1.0317757640258078|0.0636676630573475|4.02|151.0|21|2|sense REV__L1MB3_dup3186|chr3:56574812-56576287:-|1.0317757640258078|0.0636676630573475|4.02|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 585.905029296875 2 585.905882 1169.79721 NaN NaN NaN NaN NaN NaN NaN 70.955 1 74.474 73.974 74.974 3.5185 0 0 0 0.53105 1 16444 16444 0.40072 0 1 + 35381 25875 22560 22571 40560 40560 0.21910514244450496 RGVPETCWE 9 Unmodified _RGVPETCWE_ 0 0 0 REV__ENST00000336787.5_1_15:55520896-55527041:-|nuORF REV__ENST00000336787.5_1_15:55520896-55527041:-|nuORF MSMS UPN46_class_I_Rep_3 1 538.6986083984375 2 538.745116 1075.47568 NaN NaN NaN NaN NaN NaN NaN 68.518 1 68.518 68.018 69.018 0 0 0 0 0.39518 1 15648 15648 1.8442 0 1 + 35382 21796 22561 22572 40561 40561 -0.05903950848005479 RGVRKVFL 8 Unmodified _RGVRKVFL_ 0 0 0 nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG nc|ENSG00000196811|P07510-2|CHRNG nc|ENSG00000196811|P07510-2|CHRNG MSMS UPN48_class_I_Rep_3 7 487.8147277832031 2 487.816536 973.618519 NaN NaN NaN NaN NaN NaN NaN 67.712 1 71.22 70.72 71.72 3.5077 0 0 0 0.40604 1 15478 15478 2.5775 1.7838 1 35383 5332 22562 22573 40562 40562 0.13065469396212848 RGVRQFLP 8 Unmodified _RGVRQFLP_ 0 0 0 REV__nc|ENSG00000256453|Q8IYX4|DND1 REV__nc|ENSG00000256453|Q8IYX4|DND1 MULTI-MSMS UPN48_class_I_Rep_1 5 486.7908935546875 2 486.790518 971.566484 0.18849 9.1754E-05 -0.50531 -0.00024598 -0.31682 -0.00015422 486.7903080704948 35.107 0.67238 38.621 38.372 39.045 3.5144 104 69 2 0 0 0 0.82752 1 5644 5644 4.756 0 1 125260 + 35384 32119 22563 22574 40563 40563 0.0795630598245225 RGVRVPRPFW 10 Unmodified _RGVRVPRPFW_ 0 0 0 REV__L1MB7_dup6503|chr5:71532767-71533448:-|1.00307612920423|0.0207647972819255|5.59|151.0|17|2|sense REV__L1MB7_dup6503|chr5:71532767-71533448:-|1.00307612920423|0.0207647972819255|5.59|151.0|17|2|sense MSMS UPN47_class_I_Rep_3 4 635.3697509765625 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 90.542 1 93.939 93.439 94.439 3.3976 0 0 0 0.53105 1 22690 22690 1.6526 0.17072 1 + 35385 26293 22564 22575 40564 40564 0.10183019610576594 RGVVVIWK 8 Unmodified _RGVVVIWK_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|248|1|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|248|1|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|248|1|anti-sense MSMS UPN47_class_I_Rep_2 3 478.80535888671875 2 478.805637 955.596721 NaN NaN NaN NaN NaN NaN NaN 64.54 1 67.796 67.296 68.296 3.2556 0 0 0 0.40746 1 15382 15382 0.69038 0 1 35386 13657 22565 22576 40565 40565 0.11714664647649897 RGWDPERD 8 Unmodified _RGWDPERD_ 0 0 0 ENST00000427497.3_1_17:17135133-17140372:-|nuORF ENST00000427497.3_1_17:17135133-17140372:-|nuORF ENST00000427497.3_1_17:17135133-17140372:-|nuORF MSMS UPN47_class_I_Rep_3 4 515.7376708984375 2 515.73868 1029.46281 NaN NaN NaN NaN NaN NaN NaN 22.595 1 25.945 25.445 26.445 3.3503 0 0 0 0.40404 1 2730 2730 5.2307 0 1 35387 6711 22566 22577 40566 40566 -0.05074645915851761 RGWFYQWK 8 Unmodified _RGWFYQWK_ 0 0 0 nc|ENSG00000140873|Q8TE60-2|ADAMTS18;ENSG00000140873|ENST00000282849|ADAMTS18 nc|ENSG00000140873|Q8TE60-2|ADAMTS18 nc|ENSG00000140873|Q8TE60-2|ADAMTS18 MSMS UPN47_class_I_Rep_1 2 585.79638671875 2 585.795801 1169.57705 NaN NaN NaN NaN NaN NaN NaN 72.757 1 76.137 75.637 76.637 3.3799 0 0 0 0.40746 1 17823 17823 0.69038 0 1 35388 3194 22567 22578 40567 40567 -0.0009571136313297757 RGWPSTAT 8 Unmodified _RGWPSTAT_ 0 0 0 REV__L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|53|3|sense REV__L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|53|3|sense MSMS UPN48_class_I_Rep_1 5 438.2221984863281 2 438.222134 874.429715 NaN NaN NaN NaN NaN NaN NaN 86.197 1 89.81 89.31 90.31 3.613 0 0 0 0.40746 1 20646 20646 0.69038 0 1 + 35389 27245 22568 22579 40568 40568 -0.01252227967916042 RGWRKAIP 8 Unmodified _RGWRKAIP_ 0 0 0 L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|2|1|sense L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|2|1|sense L1PBb_dup257|chr13:72953229-72954900:-|3.2888092454521263|0.0471750324989146|6.12|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 492.2982482910156 2 492.29851 982.582468 NaN NaN NaN NaN NaN NaN NaN 78.375 1 81.998 81.498 82.498 3.6222 0 0 0 0.40746 1 18592 18592 0.69038 0 1 35390 15408 22569 22580 40569 40569 0.09048012219352586 RGWRQNWQ 8 Unmodified _RGWRQNWQ_ 0 0 0 REV__ENST00000423724.5_1_7:93055670-93072938:-|nuORF REV__ENST00000423724.5_1_7:93055670-93072938:-|nuORF MSMS UPN48_class_I_Rep_1 5 565.7823486328125 2 565.783756 1129.55296 NaN NaN NaN NaN NaN NaN NaN 20.916 1 24.461 23.961 24.961 3.5454 0 0 0 0.40625 1 1837 1837 2.3027 0.24298 1 + 35391 17522 22570 22581 40570 40570 -0.006635517967879423 RGYKIPVI 8 Unmodified _RGYKIPVI_ 0 0 0 ENST00000395613.2_1_22:51193627-51193861:-|nuORF;ENST00000558020.1_1_15:101828356-101835383:-|nuORF;ENST00000560856.5_1_15:101827905-101835383:-|nuORF;ENST00000558036.5_1_15:101827046-101835383:-|nuORF;ENSG00000131876|ENST00000254193|SNRPA1 ENST00000395613.2_1_22:51193627-51193861:-|nuORF ENST00000395613.2_1_22:51193627-51193861:-|nuORF MSMS UPN47_class_I_Rep_3 4 473.2995910644531 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 43.519 1 46.76 46.26 47.26 3.2419 0 0 0 0.40738 1 9037 9037 0.79363 0 1 35392 2724 22571 22582 40571 40571 0.10622958410738192 RGYKKSPKR 9 Unmodified _RGYKKSPKR_ 0 0 0 REV__ENST00000511367.6_1_5:31464413-31466317:-|nuORF REV__ENST00000511367.6_1_5:31464413-31466317:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 560.3409423828125 2 560.340907 1118.66726 0.45325 0.00025397 -0.93691 -0.00052499 -0.48367 -0.00027102 560.3403602716462 94.996 0.2226 98.613 98.52 98.743 3.6167 39 28 2 0 0 0 0.46434 1 22850 22850 4.3292 2.0265 1 128810 + 35393 22741 22572 22583 40572 40572 0.11267337965318802 RGYLKKFTK 9 Unmodified _RGYLKKFTK_ 0 0 0 REV__L1MA3_dup3331|chr6:34846434-34847911:-|1.2378476589003224|0.0812797789862831|3.93|151.0|12|1|sense REV__L1MA3_dup3331|chr6:34846434-34847911:-|1.2378476589003224|0.0812797789862831|3.93|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.8477783203125 2 570.848033 1139.68151 0.12992 7.4165E-05 -0.23456 -0.0001339 -0.10464 -5.9731E-05 570.8477443325519 26.13 0.097965 26.13 26.114 26.212 0 8 4 3 0 0 0 0.50015 1 3709 3709 0.6015 0 1 327100 + 35394 25017 22573 22584 40573 40573 0.11725990393597385 RGYRYRKEFLR 11 Unmodified _RGYRYRKEFLR_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS UPN47_class_I_Rep_2 3 515.2905883789062 3 515.291664 1542.85316 -0.30408 -0.00015669 -0.40269 -0.0002075 -0.70677 -0.00036419 515.2914054905685 22.754 0.77631 26.199 25.873 26.649 3.4447 146 71 3 0 0 0 0.68478 1 2800 2800 0.094841 0.011491 1 88341 35395 4449 22574 22585 40574 40574 0.10345115413974781 RHAAGRPV 8 Unmodified _RHAAGRPV_ 0 0 0 ENST00000509395.1_1_5:180480078-180480560:+|nuORF ENST00000509395.1_1_5:180480078-180480560:+|nuORF ENST00000509395.1_1_5:180480078-180480560:+|nuORF MSMS UPN46_class_I_Rep_3 1 432.30059814453125 2 432.25156 862.488568 NaN NaN NaN NaN NaN NaN NaN 39.458 1 39.458 38.958 39.958 0 0 0 0 0.40625 1 7585 7585 2.3027 1.6124 1 35396 7173 22575 22586 40575 40575 0.05182293117070458 RHAIPKNAR 9 Unmodified _RHAIPKNAR_ 0 0 0 MER34D_dup146|chr10:26516864-26517179:-|1.3412142805036085|0.0059398303034836|7.82|151.0|1|1|sense MER34D_dup146|chr10:26516864-26517179:-|1.3412142805036085|0.0059398303034836|7.82|151.0|1|1|sense MER34D_dup146|chr10:26516864-26517179:-|1.3412142805036085|0.0059398303034836|7.82|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 532.3197631835938 2 531.817599 1061.62064 0.32665 0.00017372 -0.86936 -0.00046234 -0.54271 -0.00028862 531.8170820660202 79.338 0.58247 82.694 82.285 82.867 3.3554 89 54 2 0 0 0 0.48846 1 19775 19775 1.8442 0 1 110460 35397 15927 22576 22587 40576 40576 0.09229898134026371 RHALKWAVVAV 11 Unmodified _RHALKWAVVAV_ 0 0 0 REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|270|1|anti-sense REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|270|1|anti-sense MSMS UPN46_class_I_Rep_3 1 625.3798828125 2 625.380032 1248.74551 NaN NaN NaN NaN NaN NaN NaN 104.69 1 104.69 104.19 105.19 0 0 0 0 0.38417 1 25552 25552 1.4819 0 1 + 35398 25290 22577 22588 40577 40577 0.13108770550547888 RHARLMVRR 9 Unmodified _RHARLMVRR_ 0 0 0 REV__nc|ENSG00000110697|O00562-2|PITPNM1 REV__nc|ENSG00000110697|O00562-2|PITPNM1 MULTI-SECPEP UPN46_class_I_Rep_3 1 597.3570556640625 2 597.859275 1193.704 0.57552 0.00034408 -4.3499 -0.0026006 -3.7744 -0.0022566 597.8558515290827 86.634 0.053261 86.634 86.609 86.662 0 5 3 2 0 0 0 0.12462 1 20720 20720 1.8442 0.36234 1 128480 + 35399 18436 22578 22589 40578 40578 0.11489311310219819 RHARLMVRR 9 Unmodified _RHARLMVRR_ 0 0 0 REV__nc|ENSG00000110697|O00562-2|PITPNM1 REV__nc|ENSG00000110697|O00562-2|PITPNM1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 597.859275 1193.704 0.48246 0.00028844 -4.3692 -0.0026122 -3.8868 -0.0023237 598.3587022712758 82.858 0.074051 86.527 86.489 86.563 3.669 -0.20305 0.00045058 NaN 1.8442 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 69602 + 35400 18436 22578 22589 0.11489311310219819 RHASLQTN 8 Unmodified _RHASLQTN_ 0 0 0 nc|ENSG00000130821|P48029-2|SLC6A8 nc|ENSG00000130821|P48029-2|SLC6A8 nc|ENSG00000130821|P48029-2|SLC6A8 MSMS UPN48_class_I_Rep_2 6 463.7438659667969 2 463.743765 925.472977 NaN NaN NaN NaN NaN NaN NaN 103 1 106.71 106.21 107.21 3.7108 0 0 0 0.40738 1 24386 24386 0.79363 0 1 35401 16681 22579 22590 40579 40579 0.007259618093598874 RHCAARHPL 9 Unmodified _RHCAARHPL_ 0 0 0 ENSG00000090530|ENST00000319332|P3H2 ENSG00000090530|ENST00000319332|P3H2 ENSG00000090530|ENST00000319332|P3H2 MSMS UPN48_class_I_Rep_1 5 530.7843627929688 2 530.782702 1059.55085 NaN NaN NaN NaN NaN NaN NaN 115.03 1 118.66 118.16 119.16 3.6301 0 0 0 0.39428 1 27976 27976 2.0598 0 1 35402 1354 22580 22591 40580 40580 0.02345696193765434 RHCQEHKL 8 Unmodified _RHCQEHKL_ 0 0 0 ENSG00000087903.13,RFX2,chr19,-,I20.1,6008227,6010135|32|6.23|1|intron;ENSG00000087903.13,RFX2,chr19,-,I17.1,6016272,6023095|29|8.16|2|intron;ENST00000588021.5_1_19:6007990-6026242:-|nuORF;nc|ENSG00000080298|P48380-3|RFX3;ENSG00000087903.13,RFX2,chr19,-,I13.1,6040242,6042043|23|8.77|1|intron;ENSG00000087903.13,RFX2,chr19,-,I17.1,6016272,6023095|29|8.16|1|intron;ENSG00000087903.13,RFX2,chr19,-,I13.1,6040242,6042043|23|8.77|3|intron;ENSG00000087903.13,RFX2,chr19,-,I13.1,6040242,6042043|23|8.77|4|intron;nc|ENSG00000087903|P48378-2|RFX2;nc|ENSG00000080298|P48380-2|RFX3;ENSG00000087903|ENST00000303657|RFX2;ENSG00000080298|ENST00000617270|RFX3 ENSG00000087903.13,RFX2,chr19,-,I20.1,6008227,6010135|32|6.23|1|intron ENSG00000087903.13,RFX2,chr19,-,I20.1,6008227,6010135|32|6.23|1|intron MSMS UPN47_class_I_Rep_2 3 525.7675170898438 2 525.766717 1049.51888 NaN NaN NaN NaN NaN NaN NaN 117.88 1 121.37 120.87 121.87 3.4822 0 0 0 0.40604 1 28829 28829 2.5775 0 1 35403 1198 22581 22592 40581 40581 -0.0038971628005128878 RHCTGTTG 8 Unmodified _RHCTGTTG_ 0 0 0 REV__AluSc_dup24698|chr12:123433105-123433398:-|1.5649899642410228|0.0279075805146209|5.81|151.0|11|1|anti-sense REV__AluSc_dup24698|chr12:123433105-123433398:-|1.5649899642410228|0.0279075805146209|5.81|151.0|11|1|anti-sense MSMS UPN47_class_I_Rep_1 2 416.6907653808594 2 416.690144 831.365735 NaN NaN NaN NaN NaN NaN NaN 97.438 1 101.22 100.72 101.72 3.7861 0 0 0 0.40746 1 24145 24145 0.69038 0 1 + 35404 17080 22582 22593 40582 40582 -0.05669331396495636 RHDKRLTRR 9 Unmodified _RHDKRLTRR_ 0 0 0 REV__ENST00000503741.5_1_5:145883557-145887476:+|nuORF REV__ENST00000503741.5_1_5:145883557-145887476:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 619.3715209960938 2 619.371061 1236.72757 0.53932 0.00033404 0.71556 0.0004432 1.2549 0.00077724 619.3713875526222 92.94 0.35566 96.661 96.519 96.875 3.7209 62 49 2 0 0 0 0.5015 1 23174 23174 0.45834 0 1 84442 + 35405 18512 22583 22594 40583 40583 0.11867448348380094 RHDSNLLL 8 Unmodified _RHDSNLLL_ 0 0 0 REV__nc|ENSG00000157181|Q5SWX8-3|ODR4 REV__nc|ENSG00000157181|Q5SWX8-3|ODR4 MULTI-MSMS UPN47_class_I_Rep_3 4 484.2698059082031 2 484.269616 966.524678 -0.62106 -0.00030076 0.082802 4.0098E-05 -0.53826 -0.00026066 484.2697064095342 21.978 0.89223 25.328 24.97 25.862 3.3496 107 82 2 0 0 0 0.82752 1 2515 2515 15.847 0 1 75953 + 35406 19818 22584 22595 40584 40584 0.04007705503283887 RHDSWFFL 8 Unmodified _RHDSWFFL_ 0 0 0 REV__ENST00000427525.2_1_15:85177687-85177801:+|nuORF REV__ENST00000427525.2_1_15:85177687-85177801:+|nuORF MSMS UPN47_class_I_Rep_3 4 554.2726440429688 2 554.272158 1106.52976 NaN NaN NaN NaN NaN NaN NaN 88.845 1 92.238 91.738 92.738 3.3931 0 0 0 0.40738 1 22284 22284 0.79363 0 1 + 35407 22272 22585 22596 40585 40585 -0.01923990634099937 RHDSWFFL 8 Unmodified _RHDSWFFL_ 0 0 0 REV__ENST00000427525.2_1_15:85177687-85177801:+|nuORF REV__ENST00000427525.2_1_15:85177687-85177801:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.2720336914062 2 554.272158 1106.52976 NaN NaN NaN NaN NaN NaN NaN 81.372 1 84.934 84.434 85.434 3.5624 0 0 0 0.40604 1 19402 19402 2.5775 0 1 + 35408 22272 22585 22596 40586 40586 -0.01923990634099937 RHEPVVVSY 9 Unmodified _RHEPVVVSY_ 0 0 0 REV__L1MB8_dup12001|chr12:117015672-117017042:-|2.320554831928066|0.2233954971622385|3.38|151.0|22|2|sense REV__L1MB8_dup12001|chr12:117015672-117017042:-|2.320554831928066|0.2233954971622385|3.38|151.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 543.2923583984375 2 543.290548 1084.56654 NaN NaN NaN NaN NaN NaN NaN 51.299 1 51.299 50.799 51.799 0 0 0 0 0.32573 1 10894 10894 9.3831 0 1 + 35409 26349 22586 22597 40587 40587 0.027642611918281546 RHERPHFY 8 Unmodified _RHERPHFY_ 0 0 0 L1MB8_dup12312|chr13:41055994-41056619:-|2.5754566908136853|0.0317261631284745|6.34|151.0|7|1|sense L1MB8_dup12312|chr13:41055994-41056619:-|2.5754566908136853|0.0317261631284745|6.34|151.0|7|1|sense L1MB8_dup12312|chr13:41055994-41056619:-|2.5754566908136853|0.0317261631284745|6.34|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 571.2696533203125 2 571.286131 1140.55771 NaN NaN NaN NaN NaN NaN NaN 67.671 1 70.934 70.434 71.434 3.2636 0 0 0 0.40581 1 16334 16334 2.8892 0 1 35410 10926 22587 22598 40588 40588 -0.006946676540110275 RHEWECCF 8 Unmodified _RHEWECCF_ 0 0 0 REV__ENSG00000112079|ENST00000229812|STK38 REV__ENSG00000112079|ENST00000229812|STK38 MSMS UPN47_class_I_Rep_2 3 555.218017578125 2 555.218211 1108.42187 NaN NaN NaN NaN NaN NaN NaN 24.301 1 27.766 27.266 28.266 3.4655 0 0 0 0.40738 1 3199 3199 0.79363 0 1 + 35411 18474 22588 22599 40589 40589 -0.12800446551364075 RHFHLHHH 8 Unmodified _RHFHLHHH_ 0 0 0 OldhAT1_dup1110|chr4:57098960-57099240:-|1.3296700010217353|0.3585085889159065|1.89|150.0|4|2|sense OldhAT1_dup1110|chr4:57098960-57099240:-|1.3296700010217353|0.3585085889159065|1.89|150.0|4|2|sense OldhAT1_dup1110|chr4:57098960-57099240:-|1.3296700010217353|0.3585085889159065|1.89|150.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 560.7871704101562 2 560.786633 1119.55871 NaN NaN NaN NaN NaN NaN NaN 36.631 1 40.03 39.53 40.53 3.3988 0 0 0 0.40738 1 6893 6893 0.79363 0 1 35412 16871 22589 22600 40590 40590 0.0037159150554089138 RHFIFYIF 8 Unmodified _RHFIFYIF_ 0 0 0 REV__L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|282|2|anti-sense REV__L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|282|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 571.3108520507812 2 571.810919 1141.60729 0.44375 0.00025374 1.1868 0.0006786 1.6305 0.00093234 571.8115414238003 69.122 0.11463 72.327 72.266 72.38 3.2044 10 7 2 0 0 0 0.72333 1 16842 16842 2.8892 0 1 59381 + 35413 29560 22590 22601 40591 40591 0.04214647302069352 RHFLRNLP 8 Unmodified _RHFLRNLP_ 0 0 0 REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|198|1|anti-sense REV__L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|198|1|anti-sense MSMS UPN47_class_I_Rep_2 3 526.8072509765625 2 526.809242 1051.60393 NaN NaN NaN NaN NaN NaN NaN 29.068 1 32.56 32.06 33.06 3.4923 0 0 0 0.40625 1 4603 4603 2.3027 0 1 + 35414 27290 22591 22602 40592 40592 0.08019397248085625 RHFQEREL 8 Unmodified _RHFQEREL_ 0 0 0 ENST00000497456.1_1_7:100210444-100211397:+|nuORF ENST00000497456.1_1_7:100210444-100211397:+|nuORF ENST00000497456.1_1_7:100210444-100211397:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 558.2916259765625 2 557.791247 1113.56794 0.47817 0.00026672 -4.1851 -0.0023344 -3.707 -0.0020677 557.7867937109934 77.528 0.11858 80.86 80.825 80.944 3.3315 14 11 2 0 0 0 0.82752 1 19231 19231 10.824 1.4408 1 50592 35415 7109 22592 22603 40593 40593 0.015698952805678346 RHFSKRDKK 9 Unmodified _RHFSKRDKK_ 0 0 0 L1PA16_dup3401|chr4:67447318-67448409:+|1.1412791725502218|0.0503831397277622|4.5|149.0|18|2|sense L1PA16_dup3401|chr4:67447318-67448409:+|1.1412791725502218|0.0503831397277622|4.5|149.0|18|2|sense L1PA16_dup3401|chr4:67447318-67448409:+|1.1412791725502218|0.0503831397277622|4.5|149.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 601.351806640625 2 601.349263 1200.68397 NaN NaN NaN NaN NaN NaN NaN 80.895 1 84.552 84.052 85.052 3.6567 0 0 0 0.39518 1 19193 19193 1.8442 0.36234 1 35416 14080 22593 22604 40594 40594 0.09165838851254193 RHFTLQKRR 9 Unmodified _RHFTLQKRR_ 0 0 0 REV__nc|ENSG00000041988|Q8WTV1-4|THAP3 REV__nc|ENSG00000041988|Q8WTV1-4|THAP3 MSMS UPN48_class_I_Rep_1 5 621.37255859375 2 621.37053 1240.72651 NaN NaN NaN NaN NaN NaN NaN 91.463 1 95.089 94.589 95.589 3.626 0 0 0 0.39518 1 21977 21977 1.8442 0 1 + 35417 17650 22594 22605 40595 40595 0.11577233979505763 RHGDIIPW 8 Unmodified _RHGDIIPW_ 0 0 0 ENSG00000181027|ENST00000318584|FKRP ENSG00000181027|ENST00000318584|FKRP ENSG00000181027|ENST00000318584|FKRP MULTI-MSMS UPN48_class_I_Rep_1 5 497.2669677734375 2 497.266876 992.519199 0.20271 0.0001008 -0.45815 -0.00022782 -0.25544 -0.00012702 497.2667201206715 40.547 1.0367 44.052 43.702 44.739 3.5048 145 96 2 0 0 0 0.82752 1 7356 7356 2.5775 0 1 186820 35418 4907 22595 22606 40596 40596 0.022640267114638846 RHGGEAAAAKS 11 Unmodified _RHGGEAAAAKS_ 0 0 0 REV__L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|4|1|sense REV__L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 527.7709350585938 2 527.773054 1053.53155 NaN NaN NaN NaN NaN NaN NaN 21.216 1 24.623 24.123 25.123 3.4074 0 0 0 0.38417 1 2335 2335 0.96228 0.16864 1 + 35419 29314 22596 22607 40597 40597 0.006930183838221637 RHGGGSPSCQT 11 Unmodified _RHGGGSPSCQT_ 0 0 0 REV__L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|67|3|sense REV__L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|67|3|sense MSMS UPN48_class_I_Rep_2 6 543.7440185546875 2 543.740896 1085.46724 NaN NaN NaN NaN NaN NaN NaN 111.74 1 115.41 114.91 115.91 3.6666 0 0 0 0.38417 1 26588 26588 1.0715 0.27783 1 + 35420 24855 22597 22608 40598 40598 -0.07207504764619443 RHGGHHFHHH 10 Unmodified _RHGGHHFHHH_ 0 0 0 REV__nc|ENSG00000135119|Q96EX2-2|RNFT2 REV__nc|ENSG00000135119|Q96EX2-2|RNFT2 MSMS UPN48_class_I_Rep_2 6 629.7968139648438 2 629.795521 1257.57649 NaN NaN NaN NaN NaN NaN NaN 15.731 1 19.385 18.885 19.885 3.6535 0 0 0 0.53105 1 684 684 0 0 1 + 35421 19125 22598 22609 40599 40599 -0.04199693239593216 RHGKLAPGAR 10 Unmodified _RHGKLAPGAR_ 0 0 0 REV__ENST00000561750.1_1_16:777422-778482:+|nuORF REV__ENST00000561750.1_1_16:777422-778482:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 531.8172607421875 2 531.817599 1061.62064 0.33063 0.00017583 -1.0445 -0.0005555 -0.7139 -0.00037967 531.81692608386 83.508 0.21857 83.508 83.349 83.568 0 40 23 2 0 0 0 0.56333 1 19814 19814 1.4819 1.4819 1 417400 + 35422 23030 22599 22610 40600 40600 0.09229898134026371 RHGKSLPPV 9 Unmodified _RHGKSLPPV_ 0 0 0 THE1B-int_dup182|chr1:148438401-148439975:+|3.65164324989572|0.331988202027199|3.46|151.0|84|3|anti-sense THE1B-int_dup182|chr1:148438401-148439975:+|3.65164324989572|0.331988202027199|3.46|151.0|84|3|anti-sense THE1B-int_dup182|chr1:148438401-148439975:+|3.65164324989572|0.331988202027199|3.46|151.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 495.7976989746094 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 78.978 1 78.978 78.478 79.478 0 0 0 0 0.39518 1 18529 18529 1.8442 1.0506 1 35423 32899 22600 22611 40601 40601 0.0818428863688041 RHGKSLPPV 9 Unmodified _RHGKSLPPV_ 0 0 0 THE1B-int_dup182|chr1:148438401-148439975:+|3.65164324989572|0.331988202027199|3.46|151.0|84|3|anti-sense THE1B-int_dup182|chr1:148438401-148439975:+|3.65164324989572|0.331988202027199|3.46|151.0|84|3|anti-sense THE1B-int_dup182|chr1:148438401-148439975:+|3.65164324989572|0.331988202027199|3.46|151.0|84|3|anti-sense MSMS UPN47_class_I_Rep_1 2 495.7958068847656 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.84 1 79.243 78.743 79.743 3.4034 0 0 0 0.39428 1 18740 18740 2.0598 1.2661 1 35424 32899 22600 22611 40602 40602 0.0818428863688041 RHGMTATNIY 10 Unmodified _RHGMTATNIY_ 0 0 0 REV__L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|25|2|sense REV__L1MA4_dup6321|chrX:131787432-131788667:-|1.4738648391266702|0.0179446672480186|6.36|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 582.7866821289062 2 582.28494 1162.55533 0.46555 0.00027108 -0.68025 -0.0003961 -0.2147 -0.00012502 582.2844435168562 77.521 0.76833 80.79 80.394 81.162 3.269 169 79 3 0 0 0 0.505 1 19353 19353 11.495 1.4208 1 275670 + 35425 25193 22601 22612 40603 40603 -0.019448841739858835 RHGRAEIE 8 Unmodified _RHGRAEIE_ 0 0 0 ENSG00000129250|ENST00000320785|KIF1C ENSG00000129250|ENST00000320785|KIF1C ENSG00000129250|ENST00000320785|KIF1C MSMS UPN47_class_I_Rep_1 2 483.7839050292969 2 484.25704 966.499526 NaN NaN NaN NaN NaN NaN NaN 116.04 1 119.64 119.14 120.14 3.5943 0 0 0 0.40746 1 28729 28729 0.69038 0 1 35426 2615 22602 22613 40604 40604 0.014936507006950706 RHGSFYTL 8 Unmodified _RHGSFYTL_ 0 0 0 ENST00000469172.5_1_10:70091245-70091596:+|nuORF ENST00000469172.5_1_10:70091245-70091596:+|nuORF ENST00000469172.5_1_10:70091245-70091596:+|nuORF MSMS UPN47_class_I_Rep_1 2 490.7513732910156 2 490.751059 979.487565 NaN NaN NaN NaN NaN NaN NaN 24.734 1 28.483 27.983 28.983 3.7495 0 0 0 0.39615 1 3283 3283 9.3831 0.035688 1 35427 6915 22603 22614 40605 40605 -0.0029996604248481162 RHGSMKCRQ 9 Unmodified _RHGSMKCRQ_ 0 0 0 REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF MSMS UPN47_class_I_Rep_3 4 551.7700805664062 2 551.771477 1101.5284 NaN NaN NaN NaN NaN NaN NaN 100.9 1 104.37 103.87 104.87 3.4671 0 0 0 0.39428 1 24904 24904 2.0598 1.2661 1 + 35428 22999 22604 22615 40606 40606 -0.01830271266157979 RHGYQGLYN 9 Unmodified _RHGYQGLYN_ 0 0 0 REV__L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|204|1|anti-sense REV__L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|204|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.27001953125 2 554.270147 1106.52574 0.40145 0.00022251 -1.2795 -0.00070921 -0.87808 -0.00048669 554.2693746069189 73.47 0.5197 76.856 76.556 77.076 3.3861 80 45 2 0 0 0 0.35081 1 17974 17974 10.824 1.4408 1 119790 + 35429 29850 22605 22616 40607 40607 -0.023260801278183862 RHHCPHYH 8 Unmodified _RHHCPHYH_ 0 0 0 ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN47_class_I_Rep_3 4 543.7420043945312 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 111.49 1 115.01 114.51 115.51 3.5207 0 0 0 0.40604 1 27370 27370 2.5775 0 1 35430 6210 22606 22617 40608 40608 -0.06671736391467675 RHHCPHYH 8 Unmodified _RHHCPHYH_ 0 0 0 ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.7434692382812 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 114.05 1 117.71 117.21 118.21 3.663 0 0 0 0.40604 1 27241 27241 2.5775 0 1 35431 6210 22606 22617 40609 40609 -0.06671736391467675 RHHCPHYH 8 Unmodified _RHHCPHYH_ 0 0 0 ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.7432861328125 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 119.86 1 123.53 123.03 124.03 3.6652 0 0 0 0.40738 1 28771 28771 0.79363 0 1 35432 6210 22606 22617 40610 40610 -0.06671736391467675 RHHCPHYH 8 Unmodified _RHHCPHYH_ 0 0 0 ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF ENST00000336798.11_2_1:31345156-31345357:-|nuORF MSMS UPN48_class_I_Rep_3 7 543.7439575195312 2 543.743576 1085.4726 NaN NaN NaN NaN NaN NaN NaN 116.79 1 120.42 119.92 120.92 3.6312 0 0 0 0.40738 1 27794 27794 0.79363 0 1 35433 6210 22606 22617 40611 40611 -0.06671736391467675 RHHKKATRT 9 Unmodified _RHHKKATRT_ 0 0 0 ENST00000383686.2_1_3:110611078-110612293:-|nuORF ENST00000383686.2_1_3:110611078-110612293:-|nuORF ENST00000383686.2_1_3:110611078-110612293:-|nuORF MSMS UPN48_class_I_Rep_1 5 567.8325805664062 2 567.83378 1133.65301 NaN NaN NaN NaN NaN NaN NaN 81.444 1 85.007 84.507 85.507 3.5624 0 0 0 0.38784 1 19421 19421 3.5965 0 1 35434 6505 22607 22618 40612 40612 0.09152685537014804 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 479.27728271484375 2 479.278109 956.541666 0.24046 0.00011525 -1.4816 -0.00071011 -1.2412 -0.00059487 479.27722308370016 77.582 0.073944 77.582 77.54 77.614 0 11 6 3 0 0 0 0.82752 1 18140 18140 0.79363 0 1 69497 + 35435 22690 22608 22619 40613 40613 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2774963378906 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 73.102 1 76.583 76.083 77.083 3.4812 0 0 0 0.40604 1 17204 17204 2.5775 0 1 + 35436 22690 22608 22619 40614 40614 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2774658203125 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 73.23 1 76.711 76.211 77.211 3.4812 0 0 0 0.40604 1 17243 17243 2.5775 0 1 + 35437 22690 22608 22619 40615 40615 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2779235839844 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 74.484 1 77.974 77.474 78.474 3.49 0 0 0 0.40625 1 17602 17602 2.3027 0 1 + 35438 22690 22608 22619 40616 40616 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2773132324219 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 74.966 1 78.456 77.956 78.956 3.49 0 0 0 0.40404 1 17739 17739 5.2307 0 1 + 35439 22690 22608 22619 40617 40617 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2777404785156 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 75.087 1 78.577 78.077 79.077 3.49 0 0 0 0.40404 1 17772 17772 5.2307 0 1 + 35440 22690 22608 22619 40618 40618 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2773742675781 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 75.339 1 78.839 78.339 79.339 3.4996 0 0 0 0.40404 1 17844 17844 5.2307 0 1 + 35441 22690 22608 22619 40619 40619 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2774353027344 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 75.461 1 78.961 78.461 79.461 3.4996 0 0 0 0.40404 1 17878 17878 5.2307 0 1 + 35442 22690 22608 22619 40620 40620 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2776184082031 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 75.592 1 79.091 78.591 79.591 3.4996 0 0 0 0.40404 1 17918 17918 5.2307 0 1 + 35443 22690 22608 22619 40621 40621 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2774658203125 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 75.839 1 79.338 78.838 79.838 3.4996 0 0 0 0.40404 1 17992 17992 5.2307 0 1 + 35444 22690 22608 22619 40622 40622 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 479.2804870605469 2 479.278109 956.541666 0.26784 0.00012837 -0.033119 -1.5873E-05 0.23472 0.0001125 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.82752 6 17488 17488;17551;17587;17662;17696;17767 5.2307 0 1 496720 + 35445 22690 22608 22619 40623;40624;40625;40626;40627;40628 40623 0.06165670899747511 RHHRAPLA 8 Unmodified _RHHRAPLA_ 0 0 0 REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF REV__ENST00000501338.5_1_5:96270334-96270637:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 479.278109 956.541666 0.24046 0.00011525 -1.4816 -0.00071011 -1.2412 -0.00059487 479.27722308370016 77.582 0.073944 77.582 77.54 77.614 0 0 0 NaN 0.79363 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 69497 + 35446 22690 22608 22619 0.06165670899747511 RHHTWLTF 8 Unmodified _RHHTWLTF_ 0 0 0 AluSg7_dup7368|chr17:58342807-58343087:-|1.5097578124364175|0.0217040980397979|6.12|151.0|18|2|anti-sense;AluSx_dup54792|chr9:77840348-77840635:-|1.2689583846854762|0.0100158790614073|6.99|151.0|19|3|anti-sense;AluSq2_dup39073|chr11:117070747-117071028:-|1.394363044503548|0.0115282595646292|6.92|151.0|18|2|anti-sense AluSg7_dup7368|chr17:58342807-58343087:-|1.5097578124364175|0.0217040980397979|6.12|151.0|18|2|anti-sense AluSg7_dup7368|chr17:58342807-58343087:-|1.5097578124364175|0.0217040980397979|6.12|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.285400390625 2 549.2856 1096.55665 0.33937 0.00018641 0.97276 0.00053433 1.3121 0.00072074 549.286074545603 38.634 0.54546 42.293 42.039 42.585 3.6595 90 54 2 0 0 0 0.82752 1 6717 6717 4.756 0 1 167920 35447 222 22609 22620 40629 40629 0.012231179770651579 RHICPFPVF 9 Unmodified _RHICPFPVF_ 0 0 0 Ricksha_c_dup1171|chr22:42968534-42969043:+|1.4545714944267534|0.0137345622185706|6.73|151.0|24|2|anti-sense Ricksha_c_dup1171|chr22:42968534-42969043:+|1.4545714944267534|0.0137345622185706|6.73|151.0|24|2|anti-sense Ricksha_c_dup1171|chr22:42968534-42969043:+|1.4545714944267534|0.0137345622185706|6.73|151.0|24|2|anti-sense MSMS UPN46_class_I_Rep_3 1 558.2942504882812 2 558.294579 1114.57461 NaN NaN NaN NaN NaN NaN NaN 78.389 1 78.389 77.889 78.889 0 0 0 0 0.39326 1 18358 18358 2.3027 0 1 35448 32832 22610 22621 40630 40630 0.02190116907581796 RHIQRKHI 8 Unmodified _RHIQRKHI_ 0 0 0 REV__L1MB5_dup5603|chr10:87131211-87132151:-|1.7539002204954974|0.0292483400259012|5.91|150.0|21|2|sense REV__L1MB5_dup5603|chr10:87131211-87132151:-|1.7539002204954974|0.0292483400259012|5.91|150.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 544.3326416015625 2 544.333416 1086.65228 NaN NaN NaN NaN NaN NaN NaN 83.134 1 86.815 86.315 87.315 3.6814 0 0 0 0.40625 1 19750 19750 2.3027 0 1 + 35449 26074 22611 22622 40631 40631 0.11241890887959016 RHIWVLVLL 9 Unmodified _RHIWVLVLL_ 0 0 0 REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.8704223632812 2 574.868769 1147.72298 0.63508 0.00036509 1.7124 0.0009844 2.3475 0.0013495 574.8702776364996 108.45 0.097748 111.98 111.94 112.04 3.5333 26 8 4 0 0 0 0.48414 1 26312 26312 2.3027 1.5091 1 2674100 + 35450 26922 22612 22623 40632 40632 0.15503171152931827 RHIWVLVLL 9 Unmodified _RHIWVLVLL_ 0 0 0 REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 574.868769 1147.72298 0.4864 0.00027962 1.9565 0.0011247 2.4429 0.0014044 574.8701586776702 108.44 0.12714 112.08 112.01 112.13 3.6355 0.012716 -0.00017296 NaN 2.3027 25 9 4 NaN NaN NaN NaN 0 NaN NaN 0 4164600 + 35451 26922 22612 22623 0.15503171152931827 RHIWVLVLL 9 Unmodified _RHIWVLVLL_ 0 0 0 REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 574.868769 1147.72298 0.50575 0.00029074 4.5442 0.0026123 5.05 0.0029031 575.3745618416357 108.49 0.1315 112.03 111.94 112.07 3.5382 -0.032602 0.0028022 NaN 2.3027 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4646500 + 35452 26922 22612 22623 0.15503171152931827 RHIWVLVLL 9 Unmodified _RHIWVLVLL_ 0 0 0 REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 574.868769 1147.72298 0.40187 0.00023102 2.1024 0.0012086 2.5042 0.0014396 574.8702045256341 108.45 0.10558 112.08 112.02 112.12 3.6313 0.01834 -5.2554E-06 NaN 2.3027 19 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2470100 + 35453 26922 22612 22623 0.15503171152931827 RHIWVLVLL 9 Unmodified _RHIWVLVLL_ 0 0 0 REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 574.868769 1147.72298 0.48066 0.00027632 2.2274 0.0012804 2.708 0.0015568 574.8703838214178 108.43 0.10395 112.1 112.03 112.13 3.6746 0.038686 0.00013844 NaN 2.3027 26 10 4 NaN NaN NaN NaN 0 NaN NaN 0 2952300 + 35454 26922 22612 22623 0.15503171152931827 RHIWVLVLL 9 Unmodified _RHIWVLVLL_ 0 0 0 REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense REV__L1MC4_dup5189|chr3:136312473-136313996:+|1.1702511425535174|0.0305219077234169|5.26|151.0|89|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 574.868769 1147.72298 0.47509 0.00027311 4.2445 0.00244 4.7196 0.0027131 575.3730828328323 108.43 0.1082 112.11 112.04 112.15 3.6751 0.042303 0.0024576 NaN 2.3027 20 8 4 NaN NaN NaN NaN 0 NaN NaN 0 2694200 + 35455 26922 22612 22623 0.15503171152931827 RHIYRIRFM 9 Unmodified _RHIYRIRFM_ 0 0 0 REV__nc|ENSG00000103249|P51798-2|CLCN7 REV__nc|ENSG00000103249|P51798-2|CLCN7 MSMS UPN48_class_I_Rep_3 7 646.3656616210938 2 646.363859 1290.71316 NaN NaN NaN NaN NaN NaN NaN 45.989 1 49.626 49.126 50.126 3.6369 0 0 0 0.4007 1 8867 8867 0.52476 0 1 + 35456 18223 22613 22624 40633 40633 0.07943659875900266 RHKAAGIW 8 Unmodified _RHKAAGIW_ 0 0 0 REV__L1PA8_dup7360|chr17:43250816-43251299:+|5.202070006058364|0.0001691836491768|14.91|151.0|8|2|sense REV__L1PA8_dup7360|chr17:43250816-43251299:+|5.202070006058364|0.0001691836491768|14.91|151.0|8|2|sense MSMS UPN47_class_I_Rep_2 3 469.76910400390625 2 469.769586 937.524619 NaN NaN NaN NaN NaN NaN NaN 29.547 1 33.04 32.54 33.54 3.4923 0 0 0 0.40738 1 4748 4748 0.79363 0 1 + 35457 30251 22614 22625 40634 40634 0.0533575029394342 RHKAIQPV 8 Unmodified _RHKAIQPV_ 0 0 0 REV__L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|12|2|sense REV__L1MB4_dup4552|chr9:137793099-137794029:+|1.711472858305652|0.1787213327046451|3.26|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 474.7922058105469 2 474.790518 947.566484 NaN NaN NaN NaN NaN NaN NaN 89.247 1 89.247 88.747 89.747 0 0 0 0 0.40746 1 21465 21465 0.69038 0 1 + 35458 25976 22615 22626 40635 40635 0.09060305982472983 RHKDHLTW 8 Unmodified _RHKDHLTW_ 0 0 0 REV__nc|ENSG00000292277|Q9UJ98-2|STAG3 REV__nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS UPN48_class_I_Rep_1 5 546.7889404296875 2 546.788507 1091.56246 NaN NaN NaN NaN NaN NaN NaN 115.17 1 118.8 118.3 119.3 3.6282 0 0 0 0.40604 1 28014 28014 2.5775 0.27475 1 + 35459 17771 22616 22627 40636 40636 0.020342164887324543 RHKGKGLHL 9 Unmodified _RHKGKGLHL_ 0 0 0 REV__L1M1_dup1733|chr3:121957657-121958355:+|2.371099669288594|0.0167178907243903|7.15|151.0|19|3|sense REV__L1M1_dup1733|chr3:121957657-121958355:+|2.371099669288594|0.0167178907243903|7.15|151.0|19|3|sense MSMS UPN48_class_I_Rep_1 5 523.3035888671875 2 523.322517 1044.63048 NaN NaN NaN NaN NaN NaN NaN 79.321 1 82.856 82.356 83.356 3.5352 0 0 0 0.38639 1 18932 18932 3.9444 0.3479 1 + 35460 24017 22617 22628 40637 40637 0.1099508613940543 RHKKPFVH 8 Unmodified _RHKKPFVH_ 0 0 0 REV__ENST00000584205.5_1_17:17880848-17881148:-|nuORF REV__ENST00000584205.5_1_17:17880848-17881148:-|nuORF MSMS UPN48_class_I_Rep_3 7 524.810546875 2 524.811785 1047.60902 NaN NaN NaN NaN NaN NaN NaN 60.963 1 64.476 63.976 64.976 3.5129 0 0 0 0.40604 1 13434 13434 2.5775 0.73324 1 + 35461 23135 22618 22629 40638 40638 0.08711701110701142 RHKKRKRRA 9 Unmodified _RHKKRKRRA_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS UPN47_class_I_Rep_2 3 618.4055786132812 2 618.405238 1234.79592 NaN NaN NaN NaN NaN NaN NaN 84.159 1 87.582 87.082 88.082 3.4232 0 0 0 0.4029 1 20989 20989 0 0 1 + 35462 18759 22619 22630 40639 40639 0.18791737718947843 RHKKRKRRA 9 Unmodified _RHKKRKRRA_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS UPN48_class_I_Rep_2 6 618.4054565429688 2 618.405238 1234.79592 NaN NaN NaN NaN NaN NaN NaN 76.633 1 80.244 79.744 80.744 3.6116 0 0 0 0.4029 1 18098 18098 0 0 1 + 35463 18759 22619 22630 40640 40640 0.18791737718947843 RHKKRKRRA 9 Unmodified _RHKKRKRRA_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS UPN48_class_I_Rep_3 7 618.4052734375 2 618.405238 1234.79592 NaN NaN NaN NaN NaN NaN NaN 76.538 1 80.121 79.621 80.621 3.5831 0 0 0 0.4029 1 18027 18027 0 0 1 + 35464 18759 22619 22630 40641 40641 0.18791737718947843 RHKKRKRRA 9 Unmodified _RHKKRKRRA_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS UPN48_class_I_Rep_3 7 618.4055786132812 2 618.405238 1234.79592 NaN NaN NaN NaN NaN NaN NaN 89.564 1 93.393 92.893 93.893 3.8293 0 0 0 0.4029 1 21265 21265 0 0 1 + 35465 18759 22619 22630 40642 40642 0.18791737718947843 RHKKSLQKIN 10 Unmodified _RHKKSLQKIN_ 0 0 0 L1HS_dup219|chr2:197062487-197068374:+|3.600647731926275|0.0510553637323344|6.14|151.0|26|1|sense;L1PA5_dup6808|chrX:63446464-63452482:-|1.1153272597325974|0.0841930431535194|3.73|151.0|30|1|sense L1HS_dup219|chr2:197062487-197068374:+|3.600647731926275|0.0510553637323344|6.14|151.0|26|1|sense L1HS_dup219|chr2:197062487-197068374:+|3.600647731926275|0.0510553637323344|6.14|151.0|26|1|sense MSMS UPN47_class_I_Rep_1 2 626.3888549804688 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.81 1 109.52 109.02 110.02 3.7088 0 0 0 0.53105 1 25956 25956 3.5965 0 1 35466 8477 22620 22631 40643 40643 0.14178967573911905 RHKKSVFLY 9 Unmodified _RHKKSVFLY_ 0 0 0 L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|15|1|sense L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|15|1|sense L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|15|1|sense MSMS UPN47_class_I_Rep_3 4 589.3440551757812 2 589.345658 1176.67676 NaN NaN NaN NaN NaN NaN NaN 86.928 1 90.308 89.808 90.808 3.3801 0 0 0 0.39518 1 21784 21784 1.8442 0.19162 1 35467 10135 22621 22632 40644 40644 0.09549106250869954 RHKKTHWKK 9 Unmodified _RHKKTHWKK_ 0 0 0 ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799;ENSG00000180855|ENST00000301547|ZNF443 ENSG00000196466|ENST00000430385|ZNF799 ENSG00000196466|ENST00000430385|ZNF799 MSMS UPN47_class_I_Rep_1 2 624.8746337890625 2 624.875448 1247.73634 NaN NaN NaN NaN NaN NaN NaN 91.897 1 95.603 95.103 96.103 3.7053 0 0 0 0.4007 1 22917 22917 0.52476 0 1 35468 4900 22622 22633 40645 40645 0.12238421984852721 RHKNPSKKIS 10 Unmodified _RHKNPSKKIS_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|162|3|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|162|3|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|162|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 597.8564453125 2 597.856921 1193.69929 0.48828 0.00029192 -0.50848 -0.000304 -0.020205 -1.2079E-05 598.3583623650973 85.688 1.3356 89.06 88.741 90.076 3.3716 281 165 2 0 0 0 0.56118 1 21454 21454 2.9952 0.93549 1 409170 35469 14970 22623 22634 40646 40646 0.11018705648461946 RHKNPSKKIS 10 Unmodified _RHKNPSKKIS_ 0 0 0 L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|162|3|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|162|3|sense L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|162|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.8566284179688 2 597.856921 1193.69929 0.42817 0.00025599 -0.94054 -0.00056231 -0.51237 -0.00030632 597.8562448062568 85.559 0.2514 89.165 89.081 89.333 3.6059 51 28 2 0 0 0 0.56118 1 20473 20473 2.9952 2.9952 1 246350 35470 14970 22623 22634 40647 40647 0.11018705648461946 RHKRPRNR 8 Unmodified _RHKRPRNR_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MSMS UPN48_class_I_Rep_3 7 560.340087890625 2 560.339564 1118.66457 NaN NaN NaN NaN NaN NaN NaN 95.645 1 99.553 99.053 100.05 3.9084 0 0 0 0.40746 1 22671 22671 0.69038 0 1 + 35471 17664 22624 22635 40648 40648 0.10998927351010934 RHKRRRILKER 11 Unmodified _RHKRRRILKER_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MSMS UPN46_class_I_Rep_3 1 516.2781982421875 3 516.665836 1546.97568 NaN NaN NaN NaN NaN NaN NaN 92.16 1 92.16 91.66 92.66 0 0 0 0 0.38417 1 22291 22291 0 0 1 + 35472 20573 22625 22636 40649 40649 0.22406996936069845 RHKTSLTA 8 Unmodified _RHKTSLTA_ 0 0 0 REV__Tigger1_dup7954|chr10:21606254-21606980:+|2.718834330594213|0.1829961175243658|3.89|151.0|27|1|anti-sense REV__Tigger1_dup7954|chr10:21606254-21606980:+|2.718834330594213|0.1829961175243658|3.89|151.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.26422119140625 2 457.264333 912.514114 0.068968 3.1536E-05 0.021279 9.73E-06 0.090246 4.1266E-05 457.264237347852 72.793 2.2447 76.173 75.379 77.624 3.3799 352 185 3 0 0 0 0.82752 1 17700 17700 2.3027 0 1 270870 + 35473 32529 22626 22637 40650 40650 0.05435722848858404 RHKVNPNVF 9 Unmodified _RHKVNPNVF_ 0 0 0 ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|1|intron;ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|2|intron;ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|4|intron;ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|3|intron ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|1|intron ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|1|intron MSMS UPN48_class_I_Rep_1 5 555.813232421875 2 555.811982 1109.60941 NaN NaN NaN NaN NaN NaN NaN 79.777 1 83.326 82.826 83.826 3.5487 0 0 0 0.36505 1 19053 19053 7.2892 1.5288 1 35474 1809 22627 22638 40651 40651 0.0589907603989559 RHLGYILA 8 Unmodified _RHLGYILA_ 0 0 0 L1MB1_dup133|chr1:97530517-97532116:-|3.958064026010928|0.2433950202307937|4.02|151.0|60|1|anti-sense L1MB1_dup133|chr1:97530517-97532116:-|3.958064026010928|0.2433950202307937|4.02|151.0|60|1|anti-sense L1MB1_dup133|chr1:97530517-97532116:-|3.958064026010928|0.2433950202307937|4.02|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.77813720703125 2 471.779619 941.544686 NaN NaN NaN NaN NaN NaN NaN 23.319 1 27.023 26.523 27.523 3.7042 0 0 0 0.40604 1 2864 2864 2.5775 0 1 35475 10164 22628 22639 40652 40652 0.07157501233882613 RHLHLHIY 8 Unmodified _RHLHLHIY_ 0 0 0 L1MA5A_dup1277|chr6:2343410-2343862:+|1.6978855074126982|0.0785834924104082|4.43|151.0|5|1|sense L1MA5A_dup1277|chr6:2343410-2343862:+|1.6978855074126982|0.0785834924104082|4.43|151.0|5|1|sense L1MA5A_dup1277|chr6:2343410-2343862:+|1.6978855074126982|0.0785834924104082|4.43|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 544.809326171875 2 544.809242 1087.60393 NaN NaN NaN NaN NaN NaN NaN 26.08 1 29.647 29.147 30.147 3.5667 0 0 0 0.40738 1 3143 3143 0.79363 0 1 35476 9933 22629 22640 40653 40653 0.06363397248105684 RHLKIGHVF 9 Unmodified _RHLKIGHVF_ 0 0 0 REV__L1MD2_dup4419|chr7:99132945-99133183:+|1.0560426070551736|0.0056017975645842|7.56|151.0|3|1|sense REV__L1MD2_dup4419|chr7:99132945-99133183:+|1.0560426070551736|0.0056017975645842|7.56|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 553.8345947265625 2 553.832717 1105.65088 NaN NaN NaN NaN NaN NaN NaN 87.922 1 91.369 90.869 91.869 3.4471 0 0 0 0.40038 1 21859 21859 0.6015 0 1 + 35477 27406 22630 22641 40654 40654 0.10228256799223345 RHLKKLMEL 9 Unmodified _RHLKKLMEL_ 0 0 0 REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 584.8572998046875 2 584.355168 1166.69578 0.42536 0.00024856 1.913 0.0011179 2.3384 0.0013665 584.3560096245781 83.645 0.11261 87.232 87.193 87.305 3.5871 12 11 2 0 0 0 0.12532 1 20004 20004 0.52476 0 1 56336 + 35478 19281 22631 22642 40655 40655 0.1191031955024755 RHLKKLMEL 9 Unmodified _RHLKKLMEL_ 0 0 0 REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 584.355168 1166.69578 0.52559 0.00030713 1.8988 0.0011096 2.4244 0.0014167 584.3561364731526 87.279 0.14909 87.279 87.208 87.357 0 0.048074 6.7758E-05 NaN 0.52476 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 236780 + 35479 19281 22631 22642 0.1191031955024755 RHLKKLMEL 9 Unmodified _RHLKKLMEL_ 0 0 0 REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF REV__ENST00000510223.5_1_4:89394995-89425581:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 584.355168 1166.69578 0.4783 0.0002795 1.7132 0.0010011 2.1915 0.0012806 584.3561107315801 83.501 0.06987 87.183 87.146 87.216 3.6814 -0.048474 -0.00014919 NaN 0.52476 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 45596 + 35480 19281 22631 22642 0.1191031955024755 RHLKRCLTSQI 11 Unmodified _RHLKRCLTSQI_ 0 0 0 L1MA3_dup3896|chr7:36494971-36495872:-|1.02180297039074|0.0534226495660485|4.26|149.0|12|2|sense L1MA3_dup3896|chr7:36494971-36495872:-|1.02180297039074|0.0534226495660485|4.26|149.0|12|2|sense L1MA3_dup3896|chr7:36494971-36495872:-|1.02180297039074|0.0534226495660485|4.26|149.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.2631530761719 3 452.262717 1353.76632 0.24469 0.00011067 0.2115 9.5655E-05 0.4562 0.00020632 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.68081 1 12701 12701 0.45452 0 1 500210 35481 9542 22632 22643 40656 40656 0.1035899286791846 RHLNKKLMLR 10 Unmodified _RHLNKKLMLR_ 0 0 0 REV__L1M5_dup40406|chr12:109968014-109968429:-|2.110499624668311|0.0538148889206901|5.29|151.0|16|3|sense REV__L1M5_dup40406|chr12:109968014-109968429:-|2.110499624668311|0.0538148889206901|5.29|151.0|16|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.939453125 3 436.939686 1307.79723 -0.047643 -2.0817E-05 0.21849 9.5468E-05 0.17085 7.4651E-05 436.93975156174486 45.654 0.94482 49.171 48.854 49.799 3.5162 122 65 2 0 0 0 0.56296 1 8931 8931 1.7423 0 1 208360 + 35482 24668 22633 22644 40657 40657 0.15564190972781944 RHLNVMLMF 9 Unmodified _RHLNVMLMF_ 0 0 0 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 MSMS UPN46_class_I_Rep_3 1 580.8084716796875 2 580.806996 1159.59944 NaN NaN NaN NaN NaN NaN NaN 100.79 1 100.79 100.29 101.29 0 0 0 0 0.40038 1 24578 24578 0.6015 0 1 35483 1237 22634 22645 40658 40658 0.026024287186601214 RHLQVIFG 8 Unmodified _RHLQVIFG_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS UPN48_class_I_Rep_1 5 485.2854309082031 2 485.285069 968.555585 0.15366 7.4571E-05 1.4127 0.00068558 1.5664 0.00076015 485.2855799024371 52.078 0.29593 55.6 55.552 55.848 3.5227 71 32 3 0 0 0 0.82752 1 10815 10815 2.5775 0 1 253810 35484 2468 22635 22646 40659 40659 0.07004903608185487 RHLQVIFG 8 Unmodified _RHLQVIFG_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MSMS UPN48_class_I_Rep_1 5 485.28570556640625 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 51.218 1 54.742 54.242 55.242 3.5246 0 0 0 0.40604 1 10541 10541 2.5775 0 1 35485 2468 22635 22646 40660 40660 0.07004903608185487 RHLQVIFG 8 Unmodified _RHLQVIFG_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MSMS UPN48_class_I_Rep_2 6 485.2857360839844 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 51.726 1 55.366 54.866 55.866 3.639 0 0 0 0.40604 1 10688 10688 2.5775 0 1 35486 2468 22635 22646 40661 40661 0.07004903608185487 RHLQVIFG 8 Unmodified _RHLQVIFG_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MSMS UPN48_class_I_Rep_3 7 485.2851257324219 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 51.284 1 54.894 54.394 55.394 3.6105 0 0 0 0.40604 1 10494 10494 2.5775 0 1 35487 2468 22635 22646 40662 40662 0.07004903608185487 RHLRRYVY 8 Unmodified _RHLRRYVY_ 0 0 0 ENSG00000141627|ENST00000675505|DYM ENSG00000141627|ENST00000675505|DYM ENSG00000141627|ENST00000675505|DYM MSMS UPN47_class_I_Rep_3 4 581.7550048828125 2 581.833249 1161.65194 NaN NaN NaN NaN NaN NaN NaN 65.674 1 68.854 68.354 69.354 3.1795 0 0 0 0.40604 1 15788 15788 2.5775 0.27475 1 35488 3228 22636 22647 40663 40663 0.07758471168108372 RHLRSLRR 8 Unmodified _RHLRSLRR_ 0 0 0 ENSG00000188290|ENST00000304952|HES4 ENSG00000188290|ENST00000304952|HES4 ENSG00000188290|ENST00000304952|HES4 MSMS UPN47_class_I_Rep_2 3 547.3450927734375 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 87.335 1 90.776 90.276 91.276 3.4407 0 0 0 0.40625 1 21710 21710 2.3027 0 1 35489 5226 22637 22648 40664 40664 0.13144695636560755 RHLRYRKP 8 Unmodified _RHLRYRKP_ 0 0 0 L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|9|1|sense L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|9|1|sense L1M2_dup8115|chr16:10403141-10404253:+|1.382262125877221|0.0288399374789242|5.58|150.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 563.3396606445312 2 563.341241 1124.66793 NaN NaN NaN NaN NaN NaN NaN 110.73 1 114.26 113.76 114.76 3.529 0 0 0 0.40746 1 27170 27170 0.69038 0 1 35490 8713 22638 22649 40665 40665 0.11058177405016067 RHMHHGIL 8 Unmodified _RHMHHGIL_ 0 0 0 L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|15|3|sense L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|15|3|sense L1PA16_dup6429|chr7:140821574-140822177:+|1.6370339645668093|0.0860681983962853|4.25|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 500.76702880859375 2 500.76652 999.518488 NaN NaN NaN NaN NaN NaN NaN 42.797 1 46.037 45.537 46.537 3.2394 0 0 0 0.40798 1 8817 8817 0 0 1 35491 14113 22639 22650 40666 40666 0.018709087907836874 RHMIMHKR 8 Unmodified _RHMIMHKR_ 0 0 0 nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF nc|ENSG00000102974|P49711-2|CTCF nc|ENSG00000102974|P49711-2|CTCF MSMS UPN46_class_I_Rep_3 1 554.80419921875 2 554.80258 1107.59061 NaN NaN NaN NaN NaN NaN NaN 14.687 1 14.687 14.187 15.187 0 0 0 0 0.40746 1 695 695 0.69038 0 1 35492 1636 22640 22651 40667 40667 0.04111499872828972 RHMRLRMK 8 Unmodified _RHMRLRMK_ 0 0 0 L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 564.3245239257812 2 564.323679 1126.63281 NaN NaN NaN NaN NaN NaN NaN 97.482 1 101.09 100.59 101.59 3.6088 0 0 0 0.40625 1 23516 23516 2.3027 0 1 35493 13358 22641 22652 40668 40668 0.0745547528122188 RHMRLRMK 8 Unmodified _RHMRLRMK_ 0 0 0 L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 564.3245849609375 2 564.323679 1126.63281 NaN NaN NaN NaN NaN NaN NaN 97.361 1 101.14 100.64 101.64 3.779 0 0 0 0.40625 1 23136 23136 2.3027 0 1 35494 13358 22641 22652 40669 40669 0.0745547528122188 RHMRLRMK 8 Unmodified _RHMRLRMK_ 0 0 0 L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense L1MEg_dup12272|chr15:58650138-58650733:-|1.3129637223746962|0.0163435845245101|6.33|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 564.3245849609375 2 564.323679 1126.63281 0.43596 0.00024603 1.378 0.00077764 1.814 0.0010237 564.3242910775162 97.15 0.23921 101.06 101.01 101.25 3.9084 51 33 2 0 0 0 0.82752 1 23031 23031 2.3027 0.24298 1 97855 35495 13358 22641 22652 40670 40670 0.0745547528122188 RHMTGTAIDQ 10 Unmodified _RHMTGTAIDQ_ 0 0 0 REV__L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|97|3|anti-sense REV__L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|97|3|anti-sense MSMS UPN48_class_I_Rep_3 7 565.2762451171875 2 565.274572 1128.53459 NaN NaN NaN NaN NaN NaN NaN 30.089 1 33.817 33.317 34.317 3.7286 0 0 0 0.53105 1 4297 4297 1.1933 0.39971 1 + 35496 27422 22642 22653 40671 40671 -0.02453474553635715 RHNFPALVR 9 Unmodified _RHNFPALVR_ 0 0 0 nc|ENSG00000166839|Q495B1-2|ANKDD1A;nc|ENSG00000166839|Q495B1-1|ANKDD1A;ENSG00000166839|ENST00000319580|ANKDD1A nc|ENSG00000166839|Q495B1-2|ANKDD1A nc|ENSG00000166839|Q495B1-2|ANKDD1A MSMS UPN48_class_I_Rep_1 5 555.320068359375 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 96.183 1 99.796 99.296 100.3 3.6124 0 0 0 0.39428 1 23165 23165 2.0598 0 1 35497 4266 22643 22654 40672 40672 0.07542782276777871 RHNLSIEI 8 Unmodified _RHNLSIEI_ 0 0 0 REV__L1MEc_dup5940|chr5:65534077-65534934:+|1.097505397668734|0.0250029066998696|5.46|151.0|54|2|anti-sense REV__L1MEc_dup5940|chr5:65534077-65534934:+|1.097505397668734|0.0250029066998696|5.46|151.0|54|2|anti-sense MSMS UPN46_class_I_Rep_3 1 491.0861511230469 2 491.277441 980.540328 NaN NaN NaN NaN NaN NaN NaN 44.594 1 44.594 44.094 45.094 0 0 0 0 0.40746 1 8998 8998 0.69038 0 1 + 35498 28462 22644 22655 40673 40673 0.049279920203161964 RHNMWMINH 9 Unmodified _RHNMWMINH_ 0 0 0 REV__L1ME2z_dup4366|chr10:101677080-101677639:+|1.4389643099481015|0.4299418400808139|1.74|151.0|9|2|sense REV__L1ME2z_dup4366|chr10:101677080-101677639:+|1.4389643099481015|0.4299418400808139|1.74|151.0|9|2|sense MSMS UPN48_class_I_Rep_3 7 619.7903442382812 2 619.787127 1237.5597 NaN NaN NaN NaN NaN NaN NaN 66.695 1 70.203 69.703 70.703 3.5077 0 0 0 0.39518 1 15168 15168 1.8442 0.19162 1 + 35499 27925 22645 22656 40674 40674 -0.04957698232055918 RHPAAMSWYE 10 Unmodified _RHPAAMSWYE_ 0 0 0 nc|ENSG00000159069|Q969U6-2|FBXW5;ENSG00000159069|ENST00000325285|FBXW5 nc|ENSG00000159069|Q969U6-2|FBXW5 nc|ENSG00000159069|Q969U6-2|FBXW5 MULTI-MSMS UPN47_class_I_Rep_1 2 624.2852172851562 2 624.28494 1246.55533 0.0044897 2.8028E-06 1.0272 0.00064125 1.0317 0.00064405 624.2856799393065 34.717 0.60046 38.403 38.181 38.781 3.6859 67 48 2 0 0 0 0.54822 1 6326 6326 5.7319 0.43497 1 97572 35500 3821 22646 22657 40675 40675 -0.058088841740072894 RHPFLVLDL 9 Unmodified _RHPFLVLDL_ 0 0 0 L1MC_dup6535|chr14:73375663-73376729:+|1.0083757630059431|0.0179641736769457|5.81|151.0|43|1|anti-sense L1MC_dup6535|chr14:73375663-73376729:+|1.0083757630059431|0.0179641736769457|5.81|151.0|43|1|anti-sense L1MC_dup6535|chr14:73375663-73376729:+|1.0083757630059431|0.0179641736769457|5.81|151.0|43|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.3298950195312 2 555.326934 1108.63931 NaN NaN NaN NaN NaN NaN NaN 100.35 1 104.09 103.59 104.59 3.7417 0 0 0 0.39428 1 23835 23835 2.0598 0.21551 1 35501 11067 22647 22658 40676 40676 0.08934014985220529 RHPQKQLLN 9 Unmodified _RHPQKQLLN_ 0 0 0 REV__MLT2B1_dup3373|chr12:92122845-92123305:-|1.109644132557566|0.0244515467819928|5.5|151.0|33|3|anti-sense REV__MLT2B1_dup3373|chr12:92122845-92123305:-|1.109644132557566|0.0244515467819928|5.5|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3302001953125 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 82.396 1 85.795 85.295 86.295 3.3984 0 0 0 0.39518 1 20537 20537 1.8442 0 1 + 35502 31815 22648 22659 40677 40677 0.0855074758567298 RHPQRQRR 8 Unmodified _RHPQRQRR_ 0 0 0 ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.3302001953125 2 567.329196 1132.64384 0.4595 0.00026069 1.0789 0.00061207 1.5384 0.00087276 567.3296974668336 84.53 0.23005 84.53 84.323 84.553 0 27 19 2 0 0 0 0.82752 1 20093 20093 2.3027 0.4585 1 172330 35503 6220 22649 22660 40678 40678 0.08282336971365112 RHPQRQRR 8 Unmodified _RHPQRQRR_ 0 0 0 ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.32958984375 2 567.329196 1132.64384 0.46358 0.00026301 0.96356 0.00054665 1.4271 0.00080966 567.3294828712527 85.664 0.27032 85.664 85.538 85.808 0 51 26 3 0 0 0 0.82752 1 20426 20426 4.756 4.756 1 244140 35504 6220 22649 22660 40679 40679 0.08282336971365112 RHPQRQRR 8 Unmodified _RHPQRQRR_ 0 0 0 ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF ENST00000338745.10_3_3:18466531-18466693:-|nuORF MSMS UPN47_class_I_Rep_1 2 567.3287353515625 2 567.329196 1132.64384 NaN NaN NaN NaN NaN NaN NaN 85.202 1 88.793 88.293 89.293 3.5914 0 0 0 0.40625 1 21280 21280 2.3027 0.24298 1 35505 6220 22649 22660 40680 40680 0.08282336971365112 RHPRRDRSR 9 Unmodified _RHPRRDRSR_ 0 0 0 REV__ENST00000564460.2_1_16:952537-955195:-|nuORF REV__ENST00000564460.2_1_16:952537-955195:-|nuORF MSMS UPN48_class_I_Rep_2 6 617.88134765625 2 618.35066 1234.68677 NaN NaN NaN NaN NaN NaN NaN 63.267 1 66.741 66.241 67.241 3.4738 0 0 0 0.40038 1 14211 14211 0.6015 0 1 + 35506 23049 22650 22661 40681 40681 0.07881107028765655 RHPRRLDI 8 Unmodified _RHPRRLDI_ 0 0 0 REV__ENSG00000189167|ENST00000533490|ZAR1L REV__ENSG00000189167|ENST00000533490|ZAR1L MULTI-MSMS UPN48_class_I_Rep_1 5 531.8172607421875 2 531.817599 1061.62064 0.35238 0.0001874 -0.75888 -0.00040359 -0.4065 -0.00021618 531.81705885935 79.355 0.078712 82.89 82.84 82.919 3.5352 14 10 2 0 0 0 0.82752 1 18940 18940 2.3027 0 1 225910 + 35507 21002 22651 22662 40682 40682 0.09229898134049108 RHPVLAAF 8 Unmodified _RHPVLAAF_ 0 0 0 ENST00000258796.11_1_7:2701400-2702321:+|nuORF ENST00000258796.11_1_7:2701400-2702321:+|nuORF ENST00000258796.11_1_7:2701400-2702321:+|nuORF MSMS UPN48_class_I_Rep_1 5 455.7667541503906 2 455.766512 909.518471 NaN NaN NaN NaN NaN NaN NaN 66.36 1 69.812 69.312 70.312 3.4516 0 0 0 0.40738 1 15169 15169 0.79363 0.10326 1 35508 5940 22652 22663 40683 40683 0.06009232062410774 RHQLLYKIHF 10 Unmodified _RHQLLYKIHF_ 0 0 0 HSMAR1_dup211|chr5:75454276-75455541:+|1.9913931577127129|0.2703921333896549|2.88|151.0|74|3|anti-sense HSMAR1_dup211|chr5:75454276-75455541:+|1.9913931577127129|0.2703921333896549|2.88|151.0|74|3|anti-sense HSMAR1_dup211|chr5:75454276-75455541:+|1.9913931577127129|0.2703921333896549|2.88|151.0|74|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.2628173828125 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.56444 1 13067 13067 0.69767 0 1 500210 35509 8423 22653 22664 40684 40684 0.1042415557926688 RHQRETVESG 10 Unmodified _RHQRETVESG_ 0 0 0 SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|46|1|anti-sense SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|46|1|anti-sense SVA_B_dup557|chr12:57494520-57496031:-|1.21202687744187|0.1651559089608483|2.88|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_2 3 599.7985229492188 2 599.7998 1197.58505 NaN NaN NaN NaN NaN NaN NaN 48.032 1 51.381 50.881 51.881 3.3492 0 0 0 0.53105 1 10348 10348 1.4819 0.28856 1 35510 32844 22654 22665 40685 40685 -0.0058422890429028485 RHQRRKNR 8 Unmodified _RHQRRKNR_ 0 0 0 REV__ENST00000429642.1_3_10:1094364-1094499:-|nuORF REV__ENST00000429642.1_3_10:1094364-1094499:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 575.8427734375 2 575.842471 1149.67039 0.42049 0.00024213 0.64653 0.0003723 1.067 0.00061444 575.8428218706854 83.908 0.19131 87.506 87.438 87.629 3.5973 31 22 2 0 0 0 0.82752 1 20087 20087 0.69038 0 1 181640 + 35511 22288 22655 22666 40686 40686 0.10154025862675553 RHRAVYRKSNF 11 Unmodified _RHRAVYRKSNF_ 0 0 0 REV__ENSG00000196417|ENST00000396408|ZNF765 REV__ENSG00000196417|ENST00000396408|ZNF765 MSMS UPN48_class_I_Rep_1 5 478.5994567871094 3 478.600609 1432.78 NaN NaN NaN NaN NaN NaN NaN 40.829 1 44.335 43.835 44.835 3.506 0 0 0 0.38417 1 7370 7370 4.4062 1.3339 1 + 35512 21038 22656 22667 40687 40687 0.08091986691351849 RHREKKELV 9 Unmodified _RHREKKELV_ 0 0 0 REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 597.8585815429688 2 597.856921 1193.69929 0.5754 0.000344 -0.8571 -0.00051242 -0.28171 -0.00016842 597.8562716397298 88.718 0.17508 88.718 88.574 88.749 0 36 20 2 0 0 0 0.48846 1 21308 21308 1.8442 0 1 680560 + 35513 17812 22657 22668 40688 40688 0.11018705648439209 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 547.33251953125 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 97.681 1 97.681 97.181 98.181 0 0 0 0 0.40746 1 23775 23775 0.69038 0 1 35514 15562 22658 22669 40689 40689 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 547.5499877929688 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 98.761 1 98.761 98.261 99.261 0 0 0 0 0.40746 1 24047 24047 0.69038 0 1 35515 15562 22658 22669 40690 40690 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 547.3334350585938 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 114.82 1 114.82 114.32 115.32 0 0 0 0 0.40746 1 28390 28390 0.69038 0 1 35516 15562 22658 22669 40691 40691 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 547.3324584960938 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 77.647 1 81.075 80.575 81.575 3.4289 0 0 0 0.40746 1 19274 19274 0.69038 0 1 35517 15562 22658 22669 40692 40692 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 547.3317260742188 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 77.785 1 81.214 80.714 81.714 3.4289 0 0 0 0.40746 1 19315 19315 0.69038 0 1 35518 15562 22658 22669 40693 40693 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 547.3331909179688 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 95.022 1 98.773 98.273 99.273 3.7508 0 0 0 0.40746 1 23592 23592 0.69038 0 1 35519 15562 22658 22669 40694 40694 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 547.3324584960938 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 97.758 1 101.54 101.04 102.04 3.7861 0 0 0 0.40746 1 24217 24217 0.69038 0 1 35520 15562 22658 22669 40695 40695 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 547.3326416015625 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 103.04 1 106.82 106.32 107.32 3.7788 0 0 0 0.40746 1 25349 25349 0.69038 0 1 35521 15562 22658 22669 40696 40696 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 547.3330078125 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 70.124 1 73.406 72.906 73.906 3.2828 0 0 0 0.40746 1 17067 17067 0.69038 0 1 35522 15562 22658 22669 40697 40697 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 547.3328857421875 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 94.249 1 97.721 97.221 98.221 3.472 0 0 0 0.40746 1 23235 23235 0.69038 0 1 35523 15562 22658 22669 40698 40698 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 547.33251953125 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 83.836 1 87.186 86.686 87.686 3.35 0 0 0 0.40604 1 21033 21033 2.5775 0.51773 1 35524 15562 22658 22669 40699 40699 0.10630640833983307 RHRGKRQR 8 Unmodified _RHRGKRQR_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense;LTR13_dup280|chr12:104293662-104294674:-|1.3032706227914264|0.0638422843866889|4.35|151.0|14|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 547.3323974609375 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 69.754 1 73.267 72.767 73.767 3.5128 0 0 0 0.40746 1 16092 16092 0.69038 0 1 35525 15562 22658 22669 40700 40700 0.10630640833983307 RHRGLRPRR 9 Unmodified _RHRGLRPRR_ 0 0 0 ENSG00000164850|ENST00000397088|GPER1 ENSG00000164850|ENST00000397088|GPER1 ENSG00000164850|ENST00000397088|GPER1 MSMS UPN46_class_I_Rep_3 1 602.3755493164062 2 602.373938 1202.73332 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.45 102.95 103.95 0 0 0 0 0.39428 1 25245 25245 2.0598 0 1 35526 4135 22659 22670 40701 40701 0.1400659165074103 RHRHFHVK 8 Unmodified _RHRHFHVK_ 0 0 0 REV__SALL2|p.F998Lfs*6|1|0.1|ENSG00000165821|chr14:21522736-21522737|-/G|frameshift_variant REV__SALL2|p.F998Lfs*6|1|0.1|ENSG00000165821|chr14:21522736-21522737|-/G|frameshift_variant MSMS UPN46_class_I_Rep_3 1 558.8181762695312 2 558.817933 1115.62131 NaN NaN NaN NaN NaN NaN NaN 13.526 1 13.526 13.026 14.026 0 0 0 0 0.40798 1 407 407 0 0 1 + 35527 20138 22660 22671 40702 40702 0.06812737573750383 RHRHGKAI 8 Unmodified _RHRHGKAI_ 0 0 0 REV__MLT1H_dup3586|chr5:177073721-177074199:+|1.1217785890225946|0.3044597311973294|1.88|151.0|22|1|anti-sense REV__MLT1H_dup3586|chr5:177073721-177074199:+|1.1217785890225946|0.3044597311973294|1.88|151.0|22|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.7948913574219 2 487.791384 973.568215 0.18092 8.8252E-05 1.955 0.00095363 2.1359 0.0010419 487.79192990158776 74.934 0.86096 78.424 77.821 78.682 3.49 125 91 2 0 0 0 0.82752 1 17678 17678 2.3027 0.24298 1 180270 + 35528 31743 22661 22672 40703 40703 0.0803735979108069 RHRHPGVV 8 Unmodified _RHRHPGVV_ 0 0 0 ENST00000533612.1_1_11:71166158-71166254:+|nuORF ENST00000533612.1_1_11:71166158-71166254:+|nuORF ENST00000533612.1_1_11:71166158-71166254:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.27728271484375 2 479.278109 956.541666 0.22536 0.00010801 0.60142 0.00028825 0.82678 0.00039626 479.27827717207134 74.915 0.97002 78.505 77.686 78.656 3.59 211 111 2 0 0 0 0.82752 5 17494 17494;17563;17582;17605;17672 5.2307 0 1 365010 35529 7311 22662 22673 40704;40705;40706;40707;40708 40704 0.061656708997588794 RHRKYRFNKK 10 Unmodified _RHRKYRFNKK_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|18|1|sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|18|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.6170959472656 3 478.284733 1431.83237 -0.81378 -0.00038922 -0.97326 -0.00046549 -1.787 -0.00085471 478.2844999682719 13.557 0.2735 16.931 16.847 17.121 3.3734 41 31 2 0 0 0 0.5652 1 360 360 0.15932 0 1 44574 + 35530 27172 22663 22674 40709 40709 0.13372569824946368 RHRKYRFNKK 10 Unmodified _RHRKYRFNKK_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|18|1|sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|18|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 478.284733 1431.83237 -0.81378 -0.00038922 -0.97326 -0.00046549 -1.787 -0.00085471 478.2844999682719 13.557 0.2735 16.931 16.847 17.121 3.3734 0.02471 0.00054047 NaN 0.15932 41 31 2 NaN NaN NaN NaN 0 NaN NaN 0 44574 + 35531 27172 22663 22674 0.13372569824946368 RHRLQRRQ 8 Unmodified _RHRLQRRQ_ 0 0 0 nc|ENSG00000132821|Q96N03-3|VSTM2L nc|ENSG00000132821|Q96N03-3|VSTM2L nc|ENSG00000132821|Q96N03-3|VSTM2L MULTI-MSMS UPN46_class_I_Rep_3 1 575.3458862304688 2 575.344846 1148.67514 0.49283 0.00028355 0.82253 0.00047324 1.3154 0.00075679 575.3451860314153 93.587 0.32614 93.587 93.408 93.734 0 46 33 3 0 0 0 0.82752 1 22652 22652 0.69038 0 1 310430 35532 16685 22664 22675 40710 40710 0.10674910005445781 RHRLRKKC 8 Unmodified _RHRLRKKC_ 0 0 0 REV__MLT1B_dup9581|chr9:40956244-40956583:+|1.1412791725502218|0.0984493162115779|3.54|150.0|13|3|sense REV__MLT1B_dup9581|chr9:40956244-40956583:+|1.1412791725502218|0.0984493162115779|3.54|150.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 548.8350830078125 2 548.835269 1095.65598 NaN NaN NaN NaN NaN NaN NaN 117.63 1 121.11 120.61 121.61 3.4891 0 0 0 0.40738 1 28756 28756 0.79363 0 1 + 35533 31622 22665 22676 40711 40711 0.1119823739018102 RHRMISRPL 9 Unmodified _RHRMISRPL_ 0 0 0 L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|160|1|anti-sense L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|160|1|anti-sense L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|160|1|anti-sense MSMS UPN48_class_I_Rep_1 5 583.3404541015625 2 583.340384 1164.66621 NaN NaN NaN NaN NaN NaN NaN 112.2 1 115.83 115.33 116.33 3.6321 0 0 0 0.4029 1 27219 27219 0 0 1 35534 9955 22666 22677 40712 40712 0.09046800324790638 RHRMPMRHL 9 Unmodified _RHRMPMRHL_ 0 0 0 REV__ENSG00000120029|ENST00000370033|ARMH3 REV__ENSG00000120029|ENST00000370033|ARMH3 MSMS UPN48_class_I_Rep_1 5 617.2799682617188 2 617.332036 1232.64952 NaN NaN NaN NaN NaN NaN NaN 47.748 1 51.27 50.77 51.77 3.5219 0 0 0 0.4007 1 9469 9469 0.52476 0 1 + 35535 18697 22667 22678 40713 40713 0.04249976167170644 RHRPLLQPSL 10 Unmodified _RHRPLLQPSL_ 0 0 0 ENST00000562011.1_1_16:88781410-88781656:+|nuORF ENST00000562011.1_1_16:88781410-88781656:+|nuORF ENST00000562011.1_1_16:88781410-88781656:+|nuORF MSMS UPN46_class_I_Rep_3 1 406.24896240234375 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 84.391 1 84.391 83.891 84.891 0 0 0 0 0.53105 1 20076 20076 0.56317 0 1 35536 7465 22668 22679 40714 40714 0.12079296028127828 RHRPLLQPSL 10 Unmodified _RHRPLLQPSL_ 0 0 0 ENST00000562011.1_1_16:88781410-88781656:+|nuORF ENST00000562011.1_1_16:88781410-88781656:+|nuORF ENST00000562011.1_1_16:88781410-88781656:+|nuORF MSMS UPN48_class_I_Rep_3 7 406.2481994628906 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 111.25 1 114.92 114.42 115.42 3.6654 0 0 0 0.53105 1 26397 26397 0.69767 0 1 35537 7465 22668 22679 40715 40715 0.12079296028127828 RHRPLVVP 8 Unmodified _RHRPLVVP_ 0 0 0 nc|ENSG00000129993|O75081-2|CBFA2T3;nc|ENSG00000129993|O75081-4|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3 nc|ENSG00000129993|O75081-2|CBFA2T3 nc|ENSG00000129993|O75081-2|CBFA2T3 MSMS UPN47_class_I_Rep_3 4 487.3042907714844 2 487.306336 972.598118 NaN NaN NaN NaN NaN NaN NaN 88.822 1 92.215 91.715 92.715 3.3931 0 0 0 0.40738 1 22278 22278 0.79363 0.10326 1 35538 2638 22669 22680 40716 40716 0.11072298736405628 RHRPQRGLA 9 Unmodified _RHRPQRGLA_ 0 0 0 REV__ENST00000323851.11_1_8:134309379-134309475:-|nuORF REV__ENST00000323851.11_1_8:134309379-134309475:-|nuORF MSMS UPN48_class_I_Rep_1 5 545.819091796875 2 545.820673 1089.62679 NaN NaN NaN NaN NaN NaN NaN 80.77 1 84.332 83.832 84.832 3.5624 0 0 0 0.38639 1 19249 19249 3.9444 0 1 + 35539 21752 22670 22681 40717 40717 0.08556416365559016 RHRPTARRQ 9 Unmodified _RHRPTARRQ_ 0 0 0 L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3433837890625 2 589.342304 1176.67005 0.54449 0.00032089 0.89915 0.00052991 1.4436 0.0008508 589.3426910657081 87.273 0.49615 87.273 87.216 87.712 0 68 43 3 0 0 0 0.47197 1 20895 20895 3.5965 0.60125 1 650690 35540 12905 22671 22682 40718 40718 0.088786061428209 RHRPTARRQ 9 Unmodified _RHRPTARRQ_ 0 0 0 L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 589.3447875976562 2 589.342304 1176.67005 NaN NaN NaN NaN NaN NaN NaN 89.366 1 89.366 88.866 89.866 0 0 0 0 0.3377 1 21496 21496 8.7454 0 1 35541 12905 22671 22682 40719 40719 0.088786061428209 RHRPTARRQ 9 Unmodified _RHRPTARRQ_ 0 0 0 L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 589.3431396484375 2 589.342304 1176.67005 NaN NaN NaN NaN NaN NaN NaN 91.916 1 91.916 91.416 92.416 0 0 0 0 0.39518 1 22223 22223 1.8442 0 1 35542 12905 22671 22682 40720 40720 0.088786061428209 RHRPTARRQ 9 Unmodified _RHRPTARRQ_ 0 0 0 L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense L1ME4b_dup18179|chr16:29168761-29169250:-|1.1311979269091603|0.0127337859031455|6.47|150.0|16|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 589.342304 1176.67005 0.53915 0.00031775 1.089 0.00064179 1.6282 0.00095954 589.3427722091938 84.064 0.098267 87.476 87.418 87.516 3.4116 0.1014 0.00019657 NaN 3.5965 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 73155 35543 12905 22671 22682 0.088786061428209 RHRPTYIW 8 Unmodified _RHRPTYIW_ 0 0 0 L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|8|1|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|8|1|sense L1ME1_dup8338|chr4:105378417-105379323:-|1.161353496752744|0.085301647013013|3.77|151.0|8|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 564.3590087890625 2 564.8067 1127.59885 0.46635 0.0002634 1.763 0.00099574 2.2293 0.0012591 564.8078479253602 74.024 0.16126 77.505 77.394 77.555 3.4812 26 15 2 0 0 0 0.72333 1 17481 17481 4.756 0.42677 1 101660 35544 12453 22672 22683 40721 40721 0.04015093385464752 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.2788391113281 2 483.278641 964.542729 0.20439 9.8777E-05 0.38608 0.00018659 0.59047 0.00028536 483.2787780116391 86.298 0.63866 89.914 89.579 90.218 3.6153 119 79 2 0 0 0 0.82752 1 21538 21538 0.79363 0 1 289030 + 35545 21554 22673 22684 40722 40722 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 483.2784118652344 2 483.278641 964.542729 0.32556 0.00015734 0.20839 0.00010071 0.53395 0.00025805 483.27870482551805 86.311 0.5666 89.744 89.469 90.035 3.4329 133 77 2 0 0 0 0.82752 1 21515 21515 0.79363 0 1 176420 + 35546 21554 22673 22684 40723 40723 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 483.2783508300781 2 483.278641 964.542729 0.16049 7.7563E-05 0.44054 0.00021291 0.60104 0.00029047 483.27880835588087 86.355 0.64551 89.736 89.433 90.078 3.3801 127 80 2 0 0 0 0.82752 2 21683 21683;21702 0.79363 0 1 204220 + 35547 21554 22673 22684 40724;40725 40724 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 483.279052734375 2 483.278641 964.542729 0.2418 0.00011686 0.51501 0.00024889 0.75681 0.00036575 483.2787830501547 86.019 0.74111 89.725 89.322 90.063 3.7058 148 84 3 0 0 0 0.82752 1 20536 20536 0.79363 0 1 496550 + 35548 21554 22673 22684 40726 40726 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 483.64630126953125 2 483.278641 964.542729 0.25015 0.00012089 0.59368 0.00028691 0.84383 0.00040781 483.2788463815888 85.964 0.6502 89.734 89.423 90.073 3.7701 153 76 3 0 0 0 0.72333 1 20477 20477 0.79363 0 1 393540 + 35549 21554 22673 22684 40727 40727 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 483.278641 964.542729 0.27561 0.0001332 0.062682 3.0293E-05 0.33829 0.00016349 483.27856887511246 89.679 0.44251 89.679 89.452 89.895 0 -0.057399 -0.00035507 NaN 0.79363 78 41 3 NaN NaN NaN NaN 0 NaN NaN 0 893120 + 35550 21554 22673 22684 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 483.278641 964.542729 0.20439 9.8777E-05 0.38608 0.00018659 0.59047 0.00028536 483.2787780116391 86.298 0.63866 89.914 89.579 90.218 3.6153 0.1774 -4.2483E-05 NaN 0.79363 119 79 2 NaN NaN NaN NaN 0 NaN NaN 0 289030 + 35551 21554 22673 22684 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 483.278641 964.542729 0.32556 0.00015734 0.20839 0.00010071 0.53395 0.00025805 483.27870482551805 86.311 0.5666 89.744 89.469 90.035 3.4329 0.0081417 -0.00021424 NaN 0.79363 133 77 2 NaN NaN NaN NaN 0 NaN NaN 0 176420 + 35552 21554 22673 22684 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 483.278641 964.542729 0.16049 7.7563E-05 0.44054 0.00021291 0.60104 0.00029047 483.27880835588087 86.355 0.64551 89.736 89.433 90.078 3.3801 -0.00076688 1.0154E-05 NaN 0.79363 127 80 2 NaN NaN NaN NaN 0 NaN NaN 0 204220 + 35553 21554 22673 22684 0.05903885268662634 RHRQRVGG 8 Unmodified _RHRQRVGG_ 0 0 0 REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF REV__ENST00000260641.9_1_2:65454937-65467014:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 483.278641 964.542729 0.14067 6.7981E-05 0.54047 0.0002612 0.68114 0.00032918 483.2788176597123 86.009 0.71127 89.622 89.311 90.022 3.613 -0.11437 0.00010674 NaN 0.79363 139 80 2 NaN NaN NaN NaN 0 NaN NaN 0 423050 + 35554 21554 22673 22684 0.05903885268662634 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 488.3062438964844 3 488.306531 1461.89776 0.30136 0.00014716 -0.36463 -0.00017805 -0.063274 -3.0897E-05 488.30631336527176 61.791 0.21837 65.258 65.225 65.444 3.4678 32 20 2 0 0 0 0.5652 1 13815 13815 0.15932 0.036457 1 121430 + 35555 26669 22674 22685 40728 40728 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MSMS UPN48_class_I_Rep_1 5 488.3061218261719 3 488.306531 1461.89776 NaN NaN NaN NaN NaN NaN NaN 63.898 1 67.355 66.855 67.855 3.4578 0 0 0 0.53105 1 14421 14421 0.69767 0.53834 1 + 35556 26669 22674 22685 40729 40729 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.64166259765625 3 488.306531 1461.89776 0.2997 0.00014634 -0.72558 -0.00035431 -0.42588 -0.00020796 488.30602474940173 63.453 0.20504 66.927 66.865 67.07 3.4738 22 16 2 0 0 0 0.56523 1 14270 14270 0.13989 0.04505 1 166930 + 35557 26669 22674 22685 40730 40730 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 488.3069152832031 3 488.306531 1461.89776 0.30874 0.00015076 -0.42545 -0.00020775 -0.11671 -5.6991E-05 488.30627690072845 62.337 0.38098 65.811 65.592 65.973 3.4738 33 29 2 0 0 0 0.84575 1 13952 13952 0.15932 0.064481 1 66304 + 35558 26669 22674 22685 40731 40731 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 488.97747802734375 3 488.306531 1461.89776 0.2997 0.00014634 -0.72558 -0.00035431 -0.42588 -0.00020796 488.30602474940173 63.453 0.20504 66.927 66.865 67.07 3.4738 22 16 2 0 0 0 0.84575 1 14255 14255 0.15932 0.036457 1 166930 + 35559 26669 22674 22685 40732 40732 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.6406555175781 3 488.306531 1461.89776 0.24074 0.00011755 -0.4654 -0.00022726 -0.22466 -0.0001097 488.3063575603064 61.555 0.19933 65.068 64.997 65.197 3.5129 21 15 2 0 0 0 0.5652 1 13613 13613 0.15932 0.036457 1 85368 + 35560 26669 22674 22685 40733 40733 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 488.6412048339844 3 488.306531 1461.89776 0.23509 0.00011479 -0.59645 -0.00029125 -0.36136 -0.00017646 488.3062041150161 60.904 0.22656 64.417 64.293 64.519 3.5129 25 19 2 0 0 0 0.84575 1 13404 13404 0.15932 0.064481 1 68657 + 35561 26669 22674 22685 40734 40734 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 488.306531 1461.89776 0.31145 0.00015208 -0.59331 -0.00028972 -0.28186 -0.00013763 488.30627764370985 61.208 0.056522 64.676 64.624 64.681 3.4678 0.14417 -3.802E-05 NaN 0.15932 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 152810 + 35562 26669 22674 22685 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 488.306531 1461.89776 0.29564 0.00014436 -0.66386 -0.00032417 -0.36822 -0.00017981 488.30615547440465 62.225 0.13866 65.688 65.58 65.718 3.4629 -0.061417 -0.00024191 NaN 0.15932 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 112780 + 35563 26669 22674 22685 0.1852898407066732 RHRRERKRLR 10 Unmodified _RHRRERKRLR_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 488.306531 1461.89776 0.32018 0.00015635 -0.43359 -0.00021172 -0.11341 -5.5377E-05 488.30614118137095 61.024 0.16467 64.503 64.441 64.606 3.4785 -0.029136 0.00019596 NaN 0.15932 16 14 2 NaN NaN NaN NaN 0 NaN NaN 0 86398 + 35564 26669 22674 22685 0.1852898407066732 RHRRKRRC 8 Unmodified _RHRRKRRC_ 0 0 0 REV__ENSG00000133937|ENST00000238558|GSC REV__ENSG00000133937|ENST00000238558|GSC MSMS UPN46_class_I_Rep_3 1 584.3478393554688 2 584.346866 1166.67918 NaN NaN NaN NaN NaN NaN NaN 62.443 1 62.443 61.943 62.943 0 0 0 0 0.40746 1 13959 13959 0.69038 0 1 + 35565 19076 22675 22686 40735 40735 0.10250676227519762 RHRRRRHHHHH 11 Unmodified _RHRRRRHHHHH_ 0 0 0 REV__ENSG00000166546|ENST00000536005|BEAN1 REV__ENSG00000166546|ENST00000536005|BEAN1 MULTI-SECPEP UPN46_class_I_Rep_3 1 406.2321472167969 4 406.224674 1620.86959 -0.19447 -7.8998E-05 -1.1715 -0.00047588 -1.3659 -0.00055488 406.22517662178996 30.114 0.048683 30.114 30.075 30.124 0 5 4 2 0 0 0 22.551 1 4850 4850 0.094841 0 1 11306 + 35566 20181 22676 22687 40736 40736 0.08399098933955429 RHRRVHLG 8 Unmodified _RHRRVHLG_ 0 0 0 nc|ENSG00000204644|Q9NU63|ZFP57;nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57 nc|ENSG00000204644|Q9NU63|ZFP57 nc|ENSG00000204644|Q9NU63|ZFP57 MSMS UPN48_class_I_Rep_2 6 515.8084716796875 2 515.810108 1029.60566 NaN NaN NaN NaN NaN NaN NaN 87.446 1 91.174 90.674 91.674 3.7279 0 0 0 0.40625 1 20806 20806 2.3027 0 1 35567 5536 22677 22688 40737 40737 0.09204451056689322 RHRSAVRLRRR 11 Unmodified _RHRSAVRLRRR_ 0 0 0 REV__ENST00000493197.5_1_5:177658804-177659618:-|nuORF REV__ENST00000493197.5_1_5:177658804-177659618:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 488.3064880371094 3 488.306531 1461.89776 0.30091 0.00014694 -0.66943 -0.00032689 -0.36852 -0.00017995 488.30602941576234 63.331 0.13794 66.805 66.737 66.874 3.4738 19 13 2 0 0 0 0.68024 1 14227 14227 0.50596 0.34663 1 80674 + 35568 22642 22678 22689 40738 40738 0.1852898407066732 RHRVNKSPI 9 Unmodified _RHRVNKSPI_ 0 0 0 REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549 REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549 MULTI-MSMS UPN48_class_I_Rep_2 6 553.8299560546875 2 553.830706 1105.64686 0.49039 0.0002716 -0.9634 -0.00053356 -0.47301 -0.00026197 553.8299132021984 81.198 0.17743 84.855 84.731 84.909 3.6567 39 22 2 0 0 0 0.48846 1 19271 19271 1.8442 0 1 245770 + 35569 18760 22679 22690 40739 40739 0.09826167305527633 RHRYFGQL 8 Unmodified _RHRYFGQL_ 0 0 0 REV__L1MD2_dup1738|chr3:43312459-43313129:+|1.0822548956932798|0.0509113886036529|4.41|149.0|19|2|sense REV__L1MD2_dup1738|chr3:43312459-43313129:+|1.0822548956932798|0.0509113886036529|4.41|149.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 538.7904663085938 2 538.79105 1075.56755 NaN NaN NaN NaN NaN NaN NaN 58.64 1 62.163 61.663 62.663 3.5231 0 0 0 0.388 1 12726 12726 12.532 3.7861 1 + 35570 27393 22680 22691 40740 40740 0.0327852035138676 RHSDICFFF 9 Unmodified _RHSDICFFF_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|244|2|anti-sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|244|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 585.7689208984375 2 586.271301 1170.52805 0.49047 0.00028755 0.35545 0.00020839 0.84593 0.00049594 586.2719616161273 71.64 0.032867 71.64 71.628 71.661 0 4 2 2 0 0 0 0.12422 1 16521 16521 2.3027 0 1 58349 + 35571 29223 22681 22692 40741 40741 -0.05039367714357468 RHSGAKGL 8 Unmodified _RHSGAKGL_ 0 0 0 REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 413.238037109375 2 413.238119 824.461684 0.066716 2.757E-05 0.047407 1.959E-05 0.11412 4.716E-05 413.23805798358563 83.116 0.15086 83.116 83.055 83.206 0 23 12 2 0 0 0 0.82752 1 19727 19727 0.69038 0 1 428840 + 35572 30486 22682 22693 40742 40742 0.04243184505912723 RHSGAKGL 8 Unmodified _RHSGAKGL_ 0 0 0 REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 413.238119 824.461684 -0.11447 -4.7305E-05 0.6517 0.00026931 0.53722 0.000222 413.2383239833344 79.57 0.6655 83.119 82.747 83.413 3.5487 0.036784 0.00020474 NaN 0.69038 152 75 3 NaN NaN NaN NaN 0 NaN NaN 0 187220 + 35573 30486 22682 22693 0.04243184505912723 RHSGAKGL 8 Unmodified _RHSGAKGL_ 0 0 0 REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 413.238119 824.461684 0.077606 3.207E-05 0.29337 0.00012123 0.37097 0.0001533 413.23818736336455 79.364 0.67738 82.998 82.707 83.385 3.6331 -0.084313 -9.1413E-05 NaN 0.69038 97 76 2 NaN NaN NaN NaN 0 NaN NaN 0 251800 + 35574 30486 22682 22693 0.04243184505912723 RHSGAKGL 8 Unmodified _RHSGAKGL_ 0 0 0 REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense REV__L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|64|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 413.238119 824.461684 0.13408 5.5409E-05 0.34856 0.00014404 0.48264 0.00019945 413.238194639146 79.453 0.7261 83.095 82.661 83.388 3.6423 0.013191 -4.5801E-05 NaN 0.69038 175 88 3 NaN NaN NaN NaN 0 NaN NaN 0 241690 + 35575 30486 22682 22693 0.04243184505912723 RHSGKVTK 8 Unmodified _RHSGKVTK_ 0 0 0 REV__L1PA6_dup1180|chr3:119981230-119987333:+|3.963896827693369|0.0877664786318478|5.5|151.0|118|3|sense REV__L1PA6_dup1180|chr3:119981230-119987333:+|3.963896827693369|0.0877664786318478|5.5|151.0|118|3|sense MSMS UPN48_class_I_Rep_1 5 456.771728515625 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 78.171 1 81.693 81.193 82.193 3.5221 0 0 0 0.40753 1 18636 18636 0.6015 0 1 + 35576 29835 22683 22694 40743 40743 0.07079429085740685 RHSLATRK 8 Unmodified _RHSLATRK_ 0 0 0 REV__LTR19C_dup45|chr6:166988471-166989237:-|2.59889592403907|0.3155249879237667|3.04|151.0|43|3|anti-sense REV__LTR19C_dup45|chr6:166988471-166989237:-|2.59889592403907|0.3155249879237667|3.04|151.0|43|3|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7914733886719 2 484.79105 967.567546 NaN NaN NaN NaN NaN NaN NaN 118.52 1 122.14 121.64 122.64 3.6189 0 0 0 0.40753 1 28908 28908 0.6015 0 1 + 35577 30867 22684 22695 40744 40744 0.08246520351383424 RHSNRVGVK 9 Unmodified _RHSNRVGVK_ 0 0 0 ENST00000606662.1_1_5:115420473-115420716:-|nuORF ENST00000606662.1_1_5:115420473-115420716:-|nuORF ENST00000606662.1_1_5:115420473-115420716:-|nuORF MSMS UPN47_class_I_Rep_3 4 526.8088989257812 2 526.807231 1051.59991 NaN NaN NaN NaN NaN NaN NaN 29.343 1 32.666 32.166 33.166 3.3235 0 0 0 0.39598 1 4730 4730 1.6526 0.96225 1 35578 7684 22685 22696 40745 40745 0.07617307754389913 RHSNWHGM 8 Unmodified _RHSNWHGM_ 0 0 0 L1PA6_dup2149|chr5:128043927-128050015:+|2.096030505670324|0.4152247584418847|2.34|150.0|185|1|anti-sense L1PA6_dup2149|chr5:128043927-128050015:+|2.096030505670324|0.4152247584418847|2.34|150.0|185|1|anti-sense L1PA6_dup2149|chr5:128043927-128050015:+|2.096030505670324|0.4152247584418847|2.34|150.0|185|1|anti-sense MSMS UPN48_class_I_Rep_3 7 512.7300415039062 2 512.730135 1023.44572 NaN NaN NaN NaN NaN NaN NaN 23.002 1 26.753 26.253 27.253 3.7507 0 0 0 0.40738 1 2440 2440 0.79363 0 1 35579 14579 22686 22697 40746 40746 -0.06506845002650152 RHSRPLAF 8 Unmodified _RHSRPLAF_ 0 0 0 REV__L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|65|2|anti-sense REV__L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|65|2|anti-sense MSMS UPN47_class_I_Rep_1 2 492.28076171875 2 492.280318 982.546083 NaN NaN NaN NaN NaN NaN NaN 111.69 1 115.26 114.76 115.76 3.572 0 0 0 0.40738 1 27560 27560 0.79363 0 1 + 35580 28365 22687 22698 40747 40747 0.05411135322651717 RHTAIKST 8 Unmodified _RHTAIKST_ 0 0 0 REV__Tigger1_dup8414|chr11:3681341-3682845:-|1.948419861194094|0.4042025600695121|2.27|151.0|92|3|anti-sense REV__Tigger1_dup8414|chr11:3681341-3682845:-|1.948419861194094|0.4042025600695121|2.27|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.2642822265625 2 457.264333 912.514114 0.16319 7.4623E-05 0.010421 4.765E-06 0.17361 7.9388E-05 457.2641985747419 72.45 1.6171 76.015 75.426 77.043 3.5645 245 162 2 0 0 0 0.82752 1 16907 16907 2.0598 0 1 245260 + 35581 32544 22688 22699 40748 40748 0.05435722848869773 RHTHLPIL 8 Unmodified _RHTHLPIL_ 0 0 0 L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|15|2|sense L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|15|2|sense L1ME2z_dup2250|chr6:3073905-3074579:-|1.7395980123531531|0.1597664268331543|3.44|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.2984313964844 2 493.798343 985.582134 0.17964 8.8706E-05 -0.0053855 -2.6593E-06 0.17426 8.6047E-05 493.8008987058098 78.232 0.56379 81.661 81.376 81.94 3.4289 130 55 3 0 0 0 0.82752 2 19376 19376;19467 2.8892 0 1 225320 35582 12556 22689 22700 40749;40750 40749 0.08876592499518665 RHTKYNQPK 9 Unmodified _RHTKYNQPK_ 0 0 0 REV__L1MC1_dup11034|chr15:30868314-30869123:+|1.6321930968374918|0.0067614127669515|7.92|149.0|16|2|sense REV__L1MC1_dup11034|chr15:30868314-30869123:+|1.6321930968374918|0.0067614127669515|7.92|149.0|16|2|sense MSMS UPN47_class_I_Rep_1 2 586.3193359375 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.46 1 104.25 103.75 104.75 3.7942 0 0 0 0.39518 1 24834 24834 1.8442 0 1 + 35583 26491 22690 22701 40751 40751 0.047301572059723185 RHTTLHRKLQ 10 Unmodified _RHTTLHRKLQ_ 0 0 0 REV__ENSG00000178175|ENST00000318442|ZNF366 REV__ENSG00000178175|ENST00000318442|ZNF366 MSMS UPN48_class_I_Rep_2 6 645.380859375 2 645.381094 1288.74764 NaN NaN NaN NaN NaN NaN NaN 107.26 1 110.94 110.44 111.44 3.6783 0 0 0 0.53105 1 25343 25343 6.2058 0.47393 1 + 35584 20642 22691 22702 40752 40752 0.11481199288368771 RHVCMGLF 8 Unmodified _RHVCMGLF_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|114|3|anti-sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|114|3|anti-sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|114|3|anti-sense MSMS UPN48_class_I_Rep_3 7 481.8339538574219 2 481.738583 961.462612 NaN NaN NaN NaN NaN NaN NaN 62.754 1 66.263 65.763 66.763 3.5091 0 0 0 0.4032 1 13975 13975 6.3541 0 1 35585 11961 22692 22703 40753 40753 -0.01966060441054651 RHVDQWNII 9 Unmodified _RHVDQWNII_ 0 0 0 L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|32|3|sense L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|32|3|sense L1MB1_dup2301|chr7:5706710-5707706:-|1.7355117778997666|0.0415887968966806|5.38|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 590.8141479492188 2 590.814722 1179.61489 NaN NaN NaN NaN NaN NaN NaN 68.933 1 72.444 71.944 72.944 3.5118 0 0 0 0.17222 1 15933 15933 18.146 0 1 35586 10166 22693 22704 40754 40754 0.03226754831712242 RHVFGGGGAV 10 Unmodified _RHVFGGGGAV_ 0 0 0 REV__ENST00000373200.4_2_X:82764093-82764138:+|nuORF REV__ENST00000373200.4_2_X:82764093-82764138:+|nuORF MSMS UPN47_class_I_Rep_2 3 478.7569580078125 2 478.756675 955.498798 NaN NaN NaN NaN NaN NaN NaN 12.972 1 16.36 15.86 16.86 3.388 0 0 0 0.53105 1 202 202 0 0 1 + 35587 21984 22694 22705 40755 40755 0.0192685605168208 RHVKKFVRK 9 Unmodified _RHVKKFVRK_ 0 0 0 HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|119|2|sense HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|119|2|sense HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|119|2|sense MSMS UPN48_class_I_Rep_2 6 599.3899536132812 2 599.388191 1196.76183 NaN NaN NaN NaN NaN NaN NaN 28.511 1 32.142 31.642 32.642 3.6311 0 0 0 0.4007 1 3932 3932 0.52476 0.21773 1 35588 8214 22695 22706 40756 40756 0.17131896507316924 RHVLGLLSFV 10 Unmodified _RHVLGLLSFV_ 0 0 0 REV__ENSG00000181284|ENST00000323206|TMEM102 REV__ENSG00000181284|ENST00000323206|TMEM102 MSMS UPN46_class_I_Rep_3 1 570.8475952148438 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 109.03 1 109.03 108.53 109.53 0 0 0 0 0.53105 1 26719 26719 13.042 1.4022 1 + 35589 20729 22696 22707 40757 40757 0.11725990393597385 RHVLKILS 8 Unmodified _RHVLKILS_ 0 0 0 L1MB3_dup14449|chr16:81557778-81558249:-|1.1221315537659846|0.0071750832475664|7.29|151.0|23|1|anti-sense L1MB3_dup14449|chr16:81557778-81558249:-|1.1221315537659846|0.0071750832475664|7.29|151.0|23|1|anti-sense L1MB3_dup14449|chr16:81557778-81558249:-|1.1221315537659846|0.0071750832475664|7.29|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_1 2 483.646484375 2 483.316369 964.618185 NaN NaN NaN NaN NaN NaN NaN 100.52 1 104.31 103.81 104.81 3.7942 0 0 0 0.40738 1 24846 24846 0.79363 0 1 35590 10351 22697 22708 40758 40758 0.13446049676360872 RHVLMRWIK 9 Unmodified _RHVLMRWIK_ 0 0 0 Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|61|3|anti-sense Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|61|3|anti-sense Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|61|3|anti-sense MSMS UPN46_class_I_Rep_3 1 619.8688354492188 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 93.819 1 93.819 93.319 94.319 0 0 0 0 0.4007 1 22747 22747 0.52476 0 1 35591 32829 22698 22709 40759 40759 0.11364847881282003 RHVLMRWIK 9 Unmodified _RHVLMRWIK_ 0 0 0 Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|61|3|anti-sense Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|61|3|anti-sense Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8689575195312 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 86.148 1 89.763 89.263 90.263 3.6153 0 0 0 0.4007 1 21517 21517 0.52476 0 1 35592 32829 22698 22709 40760 40760 0.11364847881282003 RHVLPAFLF 9 Unmodified _RHVLPAFLF_ 0 0 0 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 MSMS UPN48_class_I_Rep_2 6 550.2999877929688 2 550.324194 1098.63383 NaN NaN NaN NaN NaN NaN NaN 64.955 1 68.434 67.934 68.934 3.4792 0 0 0 0.39326 1 14727 14727 2.3027 1.5091 1 + 35593 19484 22699 22710 40761 40761 0.08846336193391835 RHVMWLGW 8 Unmodified _RHVMWLGW_ 0 0 0 REV__MER77B_dup677|chrX:1316347-1316556:-|1.0872794696292167|0.0366664801648892|4.89|151.0|1|1|sense REV__MER77B_dup677|chrX:1316347-1316556:-|1.0872794696292167|0.0366664801648892|4.89|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 542.7791748046875 2 542.779096 1083.54364 NaN NaN NaN NaN NaN NaN NaN 51.221 1 54.746 54.246 55.246 3.5246 0 0 0 0.40746 1 10542 10542 0.69038 0 1 + 35594 31563 22700 22711 40762 40762 0.005209635933624668 RHVPHVHV 8 Unmodified _RHVPHVHV_ 0 0 0 REV__ENSG00000092470|ENST00000263795|WDR76 REV__ENSG00000092470|ENST00000263795|WDR76 MSMS UPN46_class_I_Rep_3 1 490.7806701660156 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 119.74 1 119.74 119.24 120.24 0 0 0 0 0.40604 1 29774 29774 2.5775 0 1 + 35595 18036 22701 22712 40763 40763 0.05582555042508375 RHVPHVHV 8 Unmodified _RHVPHVHV_ 0 0 0 REV__ENSG00000092470|ENST00000263795|WDR76 REV__ENSG00000092470|ENST00000263795|WDR76 MSMS UPN47_class_I_Rep_1 2 490.7816467285156 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 110.93 1 114.52 114.02 115.02 3.5835 0 0 0 0.40364 1 27353 27353 5.7604 0 1 + 35596 18036 22701 22712 40764 40764 0.05582555042508375 RHVPHVHV 8 Unmodified _RHVPHVHV_ 0 0 0 REV__ENSG00000092470|ENST00000263795|WDR76 REV__ENSG00000092470|ENST00000263795|WDR76 MSMS UPN48_class_I_Rep_1 5 490.7815246582031 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 26.654 1 30.217 29.717 30.717 3.5629 0 0 0 0.40604 1 3308 3308 2.5775 1.7838 1 + 35597 18036 22701 22712 40765 40765 0.05582555042508375 RHVPHVHV 8 Unmodified _RHVPHVHV_ 0 0 0 REV__ENSG00000092470|ENST00000263795|WDR76 REV__ENSG00000092470|ENST00000263795|WDR76 MSMS UPN48_class_I_Rep_2 6 490.78094482421875 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 119.8 1 123.46 122.96 123.96 3.6652 0 0 0 0.40738 1 28752 28752 0.79363 0 1 + 35598 18036 22701 22712 40766 40766 0.05582555042508375 RHVRCFDCH 9 Unmodified _RHVRCFDCH_ 0 0 0 REV__ENST00000482165.1_1_10:1169988-1170211:+|nuORF REV__ENST00000482165.1_1_10:1169988-1170211:+|nuORF MSMS UPN48_class_I_Rep_1 5 586.7639770507812 2 586.763652 1171.51275 NaN NaN NaN NaN NaN NaN NaN 17.21 1 20.736 20.236 21.236 3.5261 0 0 0 0.4007 1 964 964 0.52476 0 1 + 35599 22572 22702 22713 40767 40767 -0.06614557783200326 RHVRRLPE 8 Unmodified _RHVRRLPE_ 0 0 0 ENST00000489643.6_1_9:34648764-34649266:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT ENST00000489643.6_1_9:34648764-34649266:+|nuORF ENST00000489643.6_1_9:34648764-34649266:+|nuORF MSMS UPN47_class_I_Rep_1 2 531.8168334960938 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 79.88 1 83.345 82.845 83.845 3.465 0 0 0 0.40625 1 19914 19914 2.3027 0 1 35600 5606 22703 22714 40768 40768 0.09229898134026371 RHVRRLPE 8 Unmodified _RHVRRLPE_ 0 0 0 ENST00000489643.6_1_9:34648764-34649266:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT ENST00000489643.6_1_9:34648764-34649266:+|nuORF ENST00000489643.6_1_9:34648764-34649266:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 531.8175659179688 2 531.817599 1061.62064 0.33446 0.00017787 -0.75828 -0.00040327 -0.42382 -0.0002254 531.8170511313647 79.597 0.56979 82.952 82.771 83.341 3.3554 109 64 3 0 0 0 0.82752 1 19826 19826 2.3027 0.4585 1 218240 35601 5606 22703 22714 40769 40769 0.09229898134026371 RHVTARCK 8 Unmodified _RHVTARCK_ 0 0 0 REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|270|2|anti-sense REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|270|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.7724609375 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 21.246 1 24.913 24.413 25.413 3.6667 0 0 0 0.40625 1 1962 1962 2.3027 0 1 + 35602 30724 22704 22715 40770 40770 0.0430689144519647 RHVVPPFL 8 Unmodified _RHVVPPFL_ 0 0 0 REV__L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|71|1|anti-sense REV__L1MB2_dup4508|chr9:112291246-112292920:+|3.25030444694202|0.0932940786749971|5.12|151.0|71|1|anti-sense MSMS UPN47_class_I_Rep_3 4 482.7881774902344 2 482.789987 963.565421 NaN NaN NaN NaN NaN NaN NaN 29.195 1 32.518 32.018 33.018 3.3235 0 0 0 0.40738 1 4685 4685 0.79363 0 1 + 35603 25739 22705 22716 40771 40771 0.08218091613559864 RHVWKLRML 9 Unmodified _RHVWKLRML_ 0 0 0 REV__AluJo_dup59836|chr16:313032-313321:+|1.024564739284633|0.1265892846449648|3.02|151.0|7|3|sense REV__AluJo_dup59836|chr16:313032-313321:+|1.024564739284633|0.1265892846449648|3.02|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 619.869384765625 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 86.586 1 90.199 89.699 90.699 3.613 0 0 0 0.39518 1 20746 20746 1.8442 0 1 + 35604 17013 22706 22717 40772 40772 0.1136484788130474 RHVYIYHR 8 Unmodified _RHVYIYHR_ 0 0 0 REV__ENST00000546893.5_1_12:46637010-46662659:-|nuORF REV__ENST00000546893.5_1_12:46637010-46662659:-|nuORF MSMS UPN48_class_I_Rep_3 7 572.6987915039062 2 572.312149 1142.60975 NaN NaN NaN NaN NaN NaN NaN 41.774 1 45.42 44.92 45.92 3.6458 0 0 0 0.40625 1 7583 7583 2.3027 0.4585 1 + 35605 22939 22707 22718 40773 40773 0.04414495759738202 RHWDWRAH 8 Unmodified _RHWDWRAH_ 0 0 0 REV__MLT1E2-int_dup130|chr20:3313604-3314310:+|1.3203033564796685|0.0164703364927442|6.32|150.0|31|2|anti-sense REV__MLT1E2-int_dup130|chr20:3313604-3314310:+|1.3203033564796685|0.0164703364927442|6.32|150.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 582.2839965820312 2 582.283923 1162.55329 NaN NaN NaN NaN NaN NaN NaN 33.227 1 36.682 36.182 37.182 3.4547 0 0 0 0.40746 1 5859 5859 0.69038 0 1 + 35606 31699 22708 22719 40774 40774 -0.02148132076922593 RHWFYPICICY 11 Unmodified _RHWFYPICICY_ 0 0 0 ENST00000504771.2_1_5:118691243-118691579:+|nuORF ENST00000504771.2_1_5:118691243-118691579:+|nuORF ENST00000504771.2_1_5:118691243-118691579:+|nuORF MSMS UPN46_class_I_Rep_3 1 500.73516845703125 3 500.902021 1499.68423 NaN NaN NaN NaN NaN NaN NaN 76.179 1 76.179 75.679 76.679 0 0 0 0 0.38417 1 17755 17755 0.45452 0.31463 1 35607 7146 22709 22720 40775 40775 -0.04562245535362308 RHWLSCKY 8 Unmodified _RHWLSCKY_ 0 0 0 REV__Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|57|2|anti-sense REV__Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|57|2|anti-sense MSMS UPN48_class_I_Rep_3 7 546.7743530273438 2 546.774011 1091.53347 NaN NaN NaN NaN NaN NaN NaN 27.057 1 30.813 30.313 31.313 3.7555 0 0 0 0.40746 1 3505 3505 0.69038 0 1 + 35608 32486 22710 22721 40776 40776 -0.008636441318913057 RHWMKIIRV 9 Unmodified _RHWMKIIRV_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.8695678710938 2 619.868777 1237.723 0.65647 0.00040693 0.53376 0.00033086 1.1902 0.00073779 619.8690133332318 91.006 0.19687 91.006 90.913 91.11 0 37 16 3 0 0 0 0.50088 1 21990 21990 0.52476 0.52476 1 816580 + 35609 32545 22711 22722 40777 40777 0.11364847881282003 RHWMKIIRV 9 Unmodified _RHWMKIIRV_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense MSMS UPN46_class_I_Rep_3 1 619.8692626953125 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 93.498 1 93.498 92.998 93.998 0 0 0 0 0.4007 1 22661 22661 0.52476 0 1 + 35610 32545 22711 22722 40778 40778 0.11364847881282003 RHWMKIIRV 9 Unmodified _RHWMKIIRV_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 619.868777 1237.723 0.65647 0.00040693 0.53376 0.00033086 1.1902 0.00073779 619.8690133332318 91.006 0.19687 91.006 90.913 91.11 0 -0.053023 -0.00034319 NaN 0.52476 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 816580 + 35611 32545 22711 22722 0.11364847881282003 RHWMKIIRV 9 Unmodified _RHWMKIIRV_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 619.868777 1237.723 0.57284 0.00035508 0.92057 0.00057063 1.4934 0.00092572 619.8691498102992 87.577 0.84211 91.024 90.716 91.558 3.4471 -0.035445 0.00013636 NaN 0.52476 183 104 2 NaN NaN NaN NaN 0 NaN NaN 0 162450 + 35612 32545 22711 22722 0.11364847881282003 RHWMKIIRV 9 Unmodified _RHWMKIIRV_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 619.868777 1237.723 0.49164 0.00030475 0.89962 0.00055765 1.3913 0.0008624 619.8693112392789 87.42 0.20333 91.148 91.038 91.241 3.7279 0.088468 0.00011038 NaN 0.52476 39 24 2 NaN NaN NaN NaN 0 NaN NaN 0 145640 + 35613 32545 22711 22722 0.11364847881282003 RHWQLPITK 9 Unmodified _RHWQLPITK_ 0 0 0 REV__L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|14|1|sense REV__L1MB3_dup14337|chr16:55563009-55565877:+|1.5553777548083758|0.0957485960125306|4.02|149.0|14|1|sense MSMS UPN48_class_I_Rep_3 7 589.8455200195312 2 589.843282 1177.67201 NaN NaN NaN NaN NaN NaN NaN 82.165 1 85.85 85.35 86.35 3.685 0 0 0 0.39518 1 19468 19468 1.8442 0 1 + 35614 25823 22712 22723 40779 40779 0.09028222108076989 RHWRKFPVL 9 Unmodified _RHWRKFPVL_ 0 0 0 L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|196|2|anti-sense L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|196|2|anti-sense L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|196|2|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8696899414062 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 88.089 1 91.745 91.245 92.245 3.6563 0 0 0 0.4007 1 22026 22026 0.52476 0.066424 1 35615 14739 22713 22724 40780 40780 0.11027921098934712 RHWRKFPVL 9 Unmodified _RHWRKFPVL_ 0 0 0 L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|196|2|anti-sense L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|196|2|anti-sense L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|196|2|anti-sense MSMS UPN48_class_I_Rep_1 5 619.8696899414062 2 619.867092 1237.71963 NaN NaN NaN NaN NaN NaN NaN 87.803 1 91.422 90.922 91.922 3.6187 0 0 0 0.39518 1 21048 21048 1.8442 0.36234 1 35616 14739 22713 22724 40781 40781 0.11027921098934712 RHYEFLWL 8 Unmodified _RHYEFLWL_ 0 0 0 REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF REV__ENST00000217398.3_1_20:32295514-32298573:-|nuORF MSMS UPN47_class_I_Rep_3 4 582.3037109375 2 582.303458 1162.59236 NaN NaN NaN NaN NaN NaN NaN 94.368 1 97.774 97.274 98.274 3.4068 0 0 0 0.40746 1 23490 23490 0.69038 0 1 + 35617 18161 22714 22725 40782 40782 0.017571554340747753 RHYEQWFHMIW 11 Unmodified _RHYEQWFHMIW_ 0 0 0 REV__L1MC4a_dup791|chr2:32296519-32296917:-|1.1363847360396404|0.0587858309568507|4.27|151.0|29|3|anti-sense REV__L1MC4a_dup791|chr2:32296519-32296917:-|1.1363847360396404|0.0587858309568507|4.27|151.0|29|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.5886840820312 3 544.922472 1631.74559 NaN NaN NaN NaN NaN NaN NaN 19.876 1 19.876 19.376 20.376 0 0 0 0 0.38417 1 1969 1969 0.094841 0 1 + 35618 27023 22715 22726 40783 40783 -0.04501597511784894 RHYHPHWH 8 Unmodified _RHYHPHWH_ 0 0 0 ENST00000331803.8_1_7:48142961-48146533:+|nuORF ENST00000331803.8_1_7:48142961-48146533:+|nuORF ENST00000331803.8_1_7:48142961-48146533:+|nuORF MSMS UPN48_class_I_Rep_3 7 585.27880859375 2 585.278641 1168.54273 NaN NaN NaN NaN NaN NaN NaN 116.03 1 119.66 119.16 120.16 3.6312 0 0 0 0.40738 1 27615 27615 0.79363 0.10326 1 35619 6194 22716 22727 40784 40784 -0.034801147313373804 RHYHYEHK 8 Unmodified _RHYHYEHK_ 0 0 0 REV__L1MC5_dup3406|chr4:2845915-2846688:-|1.98050445057516|0.0149851017321143|7.05|151.0|54|3|anti-sense REV__L1MC5_dup3406|chr4:2845915-2846688:-|1.98050445057516|0.0149851017321143|7.05|151.0|54|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.2822265625 2 585.283589 1168.55262 NaN NaN NaN NaN NaN NaN NaN 16.33 1 16.33 15.83 16.83 0 0 0 0 0.40753 1 1101 1101 0.6015 0.076735 1 + 35620 27077 22717 22728 40785 40785 -0.024909715166359092 RHYIQRNK 8 Unmodified _RHYIQRNK_ 0 0 0 L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|56|3|sense L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|56|3|sense L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|56|3|sense MSMS UPN48_class_I_Rep_2 6 557.8147583007812 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 100.05 1 103.81 103.31 104.31 3.7575 0 0 0 0.40604 1 23769 23769 2.5775 0 1 35621 12187 22718 22729 40786 40786 0.06329594271392125 RHYIWIVF 8 Unmodified _RHYIWIVF_ 0 0 0 REV__L1MB5_dup3800|chr9:5703606-5704215:-|1.062902531717513|0.0556194496400856|4.26|151.0|35|2|anti-sense REV__L1MB5_dup3800|chr9:5703606-5704215:-|1.062902531717513|0.0556194496400856|4.26|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_2 3 567.3306884765625 2 567.316369 1132.61818 NaN NaN NaN NaN NaN NaN NaN 82.15 1 85.549 85.049 86.049 3.3984 0 0 0 0.40625 1 20478 20478 2.3027 0 1 + 35622 26062 22719 22730 40787 40787 0.057180496763749034 RHYLGSKK 8 Unmodified _RHYLGSKK_ 0 0 0 ENST00000511058.1_1_3:123385915-123401122:-|nuORF ENST00000511058.1_1_3:123385915-123401122:-|nuORF ENST00000511058.1_1_3:123385915-123401122:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.24322509765625 2 494.787976 987.561398 NaN NaN NaN NaN NaN NaN NaN 50.306 1 53.533 53.033 54.033 3.2262 0 0 0 0.40746 1 11102 11102 0.69038 0.088878 1 35623 7185 22720 22731 40788 40788 0.06712002119843419 RHYRATIL 8 Unmodified _RHYRATIL_ 0 0 0 REV__nc|ENSG00000159398|Q6NT32-3|CES5A REV__nc|ENSG00000159398|Q6NT32-3|CES5A MSMS UPN47_class_I_Rep_1 2 515.299072265625 2 515.30125 1028.58795 NaN NaN NaN NaN NaN NaN NaN 61.719 1 65.087 64.587 65.587 3.3681 0 0 0 0.39996 1 14490 14490 7.9102 0 1 + 35624 19867 22721 22732 40789 40789 0.0747969101118997 RHYYQFYK 8 Unmodified _RHYYQFYK_ 0 0 0 L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|33|2|sense L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|33|2|sense L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|33|2|sense MSMS UPN47_class_I_Rep_3 4 602.797607421875 2 602.79854 1203.58253 NaN NaN NaN NaN NaN NaN NaN 25.876 1 29.224 28.724 29.724 3.3478 0 0 0 0.40746 1 3704 3704 0.69038 0.088878 1 35625 9072 22722 22733 40790 40790 -0.01112032571313648 RIAYDAYPHP 10 Unmodified _RIAYDAYPHP_ 0 0 0 ENST00000424952.6_1_3:45000890-45017449:-|nuORF ENST00000424952.6_1_3:45000890-45017449:-|nuORF ENST00000424952.6_1_3:45000890-45017449:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 601.8021240234375 2 601.80128 1201.58801 0.41814 0.00025164 -0.22034 -0.0001326 0.1978 0.00011904 601.8011138032874 42.598 0.59662 46.356 46.163 46.759 3.7579 76 52 2 0 0 0 0.56309 1 7870 7870 1.6526 1.0511 1 161330 35626 6697 22723 22734 40791 40791 -0.00472353779491641 RICGELLLL 9 Unmodified _RICGELLLL_ 0 0 0 REV__ENSG00000198286|ENST00000396946|CARD11 REV__ENSG00000198286|ENST00000396946|CARD11 MULTI-MSMS UPN48_class_I_Rep_2 6 515.3103637695312 2 515.309895 1028.60524 0.41514 0.00021393 -0.01994 -1.0275E-05 0.3952 0.00020365 515.3098083012981 53.6 1.4437 57.21 56.641 58.084 3.6098 251 97 4 0 0 0 0.37599 1 11498 11498 9.3831 1.2276 1 1398100 + 35627 21120 22724 22735 40792 40792 0.0920785050197992 RICHSIIRKQT 11 Unmodified _RICHSIIRKQT_ 0 0 0 REV__L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|36|2|sense REV__L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.5971374511719 3 452.262717 1353.76632 0.11362 5.1385E-05 0.24996 0.00011305 0.36358 0.00016443 452.26281114719467 58.176 1.2025 61.708 61.315 62.517 3.5317 128 79 2 0 0 0 0.68219 1 12627 12627 0.32927 0 1 244020 + 35628 27134 22725 22736 40793 40793 0.1035899286791846 RICIKNSEYGL 11 Unmodified _RICIKNSEYGL_ 0 0 0 REV__L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|39|2|sense REV__L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|39|2|sense MSMS UPN46_class_I_Rep_3 1 648.343017578125 2 648.342455 1294.67036 NaN NaN NaN NaN NaN NaN NaN 95.232 1 95.232 94.732 95.732 0 0 0 0 0.38417 1 23114 23114 2.7352 1.0826 1 + 35629 26642 22726 22737 40794 40794 0.03480800237139192 RIDAPTVLQ 9 Unmodified _RIDAPTVLQ_ 0 0 0 REV__ENSG00000196589|ENST00000636986|MBD3L2B REV__ENSG00000196589|ENST00000636986|MBD3L2B MSMS UPN46_class_I_Rep_3 1 506.50830078125 2 506.792924 1011.57129 NaN NaN NaN NaN NaN NaN NaN 34.446 1 34.446 33.946 34.946 0 0 0 0 0.3967 1 6151 6151 1.4819 0 1 + 35630 20754 22727 22738 40795 40795 0.06597145334569632 RIDKPVIEH 9 Unmodified _RIDKPVIEH_ 0 0 0 REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 553.8209838867188 2 553.819473 1105.62439 -0.035153 -1.9468E-05 2.8353 0.0015703 2.8002 0.0015508 553.8209140155673 31.01 0.18109 34.739 34.601 34.782 3.7293 18 13 2 0 0 0 0.12477 1 5148 5148 0.40072 0 1 43073 + 35631 18121 22728 22739 40796 40796 0.07580523117258053 RIDLPLLLPLW 11 Unmodified _RIDLPLLLPLW_ 0 0 0 REV__MLT2B3_dup41|chr1:36240096-36240673:-|1.9299195928174857|0.0137758533934235|7.13|151.0|18|3|sense REV__MLT2B3_dup41|chr1:36240096-36240673:-|1.9299195928174857|0.0137758533934235|7.13|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 450.27490234375 3 450.283224 1347.82784 NaN NaN NaN NaN NaN NaN NaN 86.303 1 89.675 89.175 90.175 3.3716 0 0 0 0.38417 1 21631 21631 0.50596 0 1 + 35632 31822 22729 22740 40797 40797 0.167842478388593 RIEFSVVFSY 10 Unmodified _RIEFSVVFSY_ 0 0 0 REV__L1M4c_dup1409|chr7:67217008-67217846:-|1.0376094785003296|0.0466978014352553|4.47|151.0|45|2|anti-sense REV__L1M4c_dup1409|chr7:67217008-67217846:-|1.0376094785003296|0.0466978014352553|4.47|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_3 4 416.22747802734375 3 416.220401 1245.63937 NaN NaN NaN NaN NaN NaN NaN 35.321 1 38.585 38.085 39.085 3.2639 0 0 0 0.53105 1 6529 6529 1.7423 0 1 + 35633 24572 22730 22741 40798 40798 0.026379701945870693 RIEFSVVFSY 10 Unmodified _RIEFSVVFSY_ 0 0 0 REV__L1M4c_dup1409|chr7:67217008-67217846:-|1.0376094785003296|0.0466978014352553|4.47|151.0|45|2|anti-sense REV__L1M4c_dup1409|chr7:67217008-67217846:-|1.0376094785003296|0.0466978014352553|4.47|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_3 4 416.22796630859375 3 416.220401 1245.63937 NaN NaN NaN NaN NaN NaN NaN 35.47 1 38.725 38.225 39.225 3.2547 0 0 0 0.53105 1 6574 6574 1.7423 0 1 + 35634 24572 22730 22741 40799 40799 0.026379701945870693 RIEHIQQE 8 Unmodified _RIEHIQQE_ 0 0 0 ENSG00000172361|ENST00000398545|CFAP53 ENSG00000172361|ENST00000398545|CFAP53 ENSG00000172361|ENST00000398545|CFAP53 MSMS UPN48_class_I_Rep_1 5 526.7789916992188 2 526.777805 1051.54106 NaN NaN NaN NaN NaN NaN NaN 22.795 1 26.355 25.855 26.855 3.5605 0 0 0 0.40625 1 2277 2277 2.3027 0 1 35635 4572 22731 22742 40800 40800 0.017347866693853575 RIELTTTY 8 Unmodified _RIELTTTY_ 0 0 0 REV__MLT1A0_dup15695|chr12:120842482-120842845:-|1.0376094785003296|0.0134349304575347|6.27|151.0|24|2|anti-sense REV__MLT1A0_dup15695|chr12:120842482-120842845:-|1.0376094785003296|0.0134349304575347|6.27|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 498.7715759277344 2 498.771657 995.528761 NaN NaN NaN NaN NaN NaN NaN 95.72 1 99.485 98.985 99.985 3.7648 0 0 0 0.40738 1 23757 23757 0.79363 0 1 + 35636 31589 22732 22743 40801 40801 0.030817502063086977 RIENPEIRL 9 Unmodified _RIENPEIRL_ 0 0 0 L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|36|2|sense;L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|42|1|sense;L1PB3_dup2621|chr12:1299974-1300978:+|3.3203503312010545|0.0480957485438127|6.11|151.0|25|3|sense;L1PREC2_dup283|chr1:155387274-155388032:-|4.172051026872714|0.0409639561697371|6.67|151.0|17|2|sense;L1PA13_dup439|chr1:213198908-213200851:+|2.178737758477973|0.0426751482469122|5.67|151.0|34|2|sense L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|36|2|sense L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.33056640625 2 570.330205 1138.64586 0.44574 0.00025422 -0.325 -0.00018535 0.12074 6.8863E-05 570.329974709936 49.359 0.98225 52.593 52.029 53.011 3.2345 105 59 2 0 0 0 0.26468 1 10749 10749 16.149 0.90062 1 135240 35637 13698 22733 22744 40802 40802 0.08207908145936926 RIESTHYQY 9 Unmodified _RIESTHYQY_ 0 0 0 L1PREC2_dup4534|chrX:74051714-74054521:+|1.197895747904586|0.1088832101754761|3.46|151.0|67|3|sense L1PREC2_dup4534|chrX:74051714-74054521:+|1.197895747904586|0.1088832101754761|3.46|151.0|67|3|sense L1PREC2_dup4534|chrX:74051714-74054521:+|1.197895747904586|0.1088832101754761|3.46|151.0|67|3|sense MSMS UPN48_class_I_Rep_3 7 598.7876586914062 2 598.78837 1195.56219 NaN NaN NaN NaN NaN NaN NaN 73.942 1 77.492 76.992 77.992 3.5505 0 0 0 0.39518 1 17318 17318 1.8442 0 1 35638 15461 22734 22745 40803 40803 -0.027772480217890916 RIFHVLMKRI 10 Unmodified _RIFHVLMKRI_ 0 0 0 L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|152|2|anti-sense;L1MA4A_dup956|chr2:240489473-240492018:-|6.636642908131902|0.1780889387464883|5.22|151.0|131|2|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|152|2|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|152|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 438.2727966308594 3 438.272665 1311.79617 0.15494 6.7908E-05 0.49414 0.00021657 0.64909 0.00028448 438.27268078439937 104.21 0.16907 104.21 104.1 104.27 0 21 16 2 0 0 0 0.56444 1 25462 25462 0.69767 0.19171 1 445160 35639 9701 22735 22746 40804 40804 0.15273976603884876 RIFKAYRV 8 Unmodified _RIFKAYRV_ 0 0 0 REV__LTR23_dup551|chr10:75225281-75225775:-|1.6593893376509374|0.2167051138262522|2.94|151.0|6|2|sense REV__LTR23_dup551|chr10:75225281-75225775:-|1.6593893376509374|0.2167051138262522|2.94|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 526.821533203125 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.15 118.65 119.65 3.4965 0 0 0 0.40746 1 28205 28205 0.69038 0 1 + 35640 30881 22736 22747 40805 40805 0.10533452050640335 RIFWITSYRL 10 Unmodified _RIFWITSYRL_ 0 0 0 L1M1_dup4699|chr9:63810943-63812812:+|1.2476832223946344|0.0307123637749145|5.34|150.0|134|3|anti-sense L1M1_dup4699|chr9:63810943-63812812:+|1.2476832223946344|0.0307123637749145|5.34|150.0|134|3|anti-sense L1M1_dup4699|chr9:63810943-63812812:+|1.2476832223946344|0.0307123637749145|5.34|150.0|134|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2689514160156 3 452.25919 1353.75574 NaN NaN NaN NaN NaN NaN NaN 28.724 1 28.724 28.224 29.224 0 0 0 0 0.53105 1 4451 4451 1.7423 0.52744 1 35641 8588 22737 22748 40806 40806 0.0930133348513209 RIFYVKFWRL 10 Unmodified _RIFYVKFWRL_ 0 0 0 REV__L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|285|2|anti-sense REV__L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|285|2|anti-sense MSMS UPN46_class_I_Rep_3 1 477.02667236328125 3 476.615197 1426.82376 NaN NaN NaN NaN NaN NaN NaN 82.539 1 82.539 82.039 83.039 0 0 0 0 0.53105 1 19557 19557 0.15932 0 1 + 35642 30043 22738 22749 40807 40807 0.12742203135780983 RIGALARRNP 10 Unmodified _RIGALARRNP_ 0 0 0 REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|11|1|sense REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 562.3433227539062 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 60.249 1 60.249 59.749 60.749 0 0 0 0 0.53105 1 13357 13357 1.4819 0 1 + 35643 30202 22739 22750 40808 40808 0.11697856196815337 RIGHQHCL 8 Unmodified _RIGHQHCL_ 0 0 0 REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 REV__nc|ENSG00000244754|Q92802-3|N4BP2L2 MSMS UPN48_class_I_Rep_1 5 481.77935791015625 2 482.250703 962.486853 NaN NaN NaN NaN NaN NaN NaN 61.185 1 64.653 64.153 65.153 3.4678 0 0 0 0.40625 1 13592 13592 2.3027 0 1 + 35644 32116 22740 22751 40809 40809 0.0041091603681024935 RIGVITNR 8 Unmodified _RIGVITNR_ 0 0 0 ENSG00000198034|ENST00000316084|RPS4X;ENST00000443195.1_1_1:20852889-20853234:+|nuORF ENSG00000198034|ENST00000316084|RPS4X ENSG00000198034|ENST00000316084|RPS4X MULTI-MSMS UPN46_class_I_Rep_3 1 464.78741455078125 2 464.787976 927.561398 -0.066099 -3.0722E-05 -0.3052 -0.00014185 -0.3713 -0.00017258 464.78768077057566 28.624 0.9141 28.624 28.232 29.146 0 94 69 2 0 0 0 0.82752 3 4428 4378;4428;4489 13.906 1.6654 1 113260 35645 5403 22741 22752 40810;40811;40812 40811 0.09472002119832723 RIGVITNRER 10 Unmodified _RIGVITNRER_ 0 0 0 ENSG00000198034|ENST00000316084|RPS4X;ENST00000443195.1_1_1:20852889-20853234:+|nuORF ENSG00000198034|ENST00000316084|RPS4X ENSG00000198034|ENST00000316084|RPS4X MULTI-MSMS UPN46_class_I_Rep_3 1 405.24249267578125 3 405.242311 1212.7051 -0.25478 -0.00010325 -0.097178 -3.9381E-05 -0.35196 -0.00014263 405.2422465515071 27.472 0.74401 27.472 27.063 27.807 0 86 60 2 0 0 0 0.53843 1 4048 4048 7.0371 2.6309 1 85281 35646 5403 22742 22753 40813 40813 0.10725804160119878 RIGYMFFLE 9 Unmodified _RIGYMFFLE_ 0 0 0 REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|331|3|anti-sense REV__L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|331|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.3025512695312 2 588.299527 1174.5845 0.44899 0.00026414 2.9484 0.0017345 3.3973 0.0019987 588.8024736052002 37.032 0.082634 40.539 40.477 40.56 3.507 11 7 2 0 0 0 0.46434 1 6250 6250 4.3292 0 1 109880 + 35647 30690 22743 22754 40814 40814 0.004192601223167003 RIHCVHVH 8 Unmodified _RIHCVHVH_ 0 0 0 REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7657165527344 2 500.76652 999.518488 NaN NaN NaN NaN NaN NaN NaN 37.28 1 40.946 40.446 41.446 3.6652 0 0 0 0.40738 1 7057 7057 0.79363 0 1 + 35648 29180 22744 22755 40815 40815 0.018709087907723188 RIHCVHVH 8 Unmodified _RIHCVHVH_ 0 0 0 REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7665100097656 2 500.76652 999.518488 NaN NaN NaN NaN NaN NaN NaN 113.69 1 117.32 116.82 117.82 3.6314 0 0 0 0.40738 1 27623 27623 0.79363 0 1 + 35649 29180 22744 22755 40816 40816 0.018709087907723188 RIHCVHVH 8 Unmodified _RIHCVHVH_ 0 0 0 REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7921142578125 2 500.76652 999.518488 NaN NaN NaN NaN NaN NaN NaN 26.491 1 30.124 29.624 30.624 3.6332 0 0 0 0.40746 1 3380 3380 0.69038 0 1 + 35650 29180 22744 22755 40817 40817 0.018709087907723188 RIHCVHVH 8 Unmodified _RIHCVHVH_ 0 0 0 REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense REV__L1PA15_dup1216|chr3:17725712-17726696:-|2.270275937593004|0.0164451983242579|7.11|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.76641845703125 2 500.76652 999.518488 NaN NaN NaN NaN NaN NaN NaN 26.715 1 30.348 29.848 30.848 3.6332 0 0 0 0.40746 1 3441 3441 0.69038 0 1 + 35651 29180 22744 22755 40818 40818 0.018709087907723188 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_1 5 559.3111572265625 2 559.311284 1116.60801 0.49143 0.00027486 -0.16598 -9.2832E-05 0.32545 0.00018203 559.311061684667 53.818 0.94342 57.333 56.946 57.889 3.5143 150 68 3 0 0 0 0.0068778 5 11320 11277;11320;11365;11406;11447 85.642 58.758 1 747040 35652 2425;4314 22745 22756 40819;40820;40821;40822;40823 40820 0.05437441951130495 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN48_class_I_Rep_1 5 559.3115844726562 2 559.311284 1116.60801 NaN NaN NaN NaN NaN NaN NaN 54.38 1 57.894 57.394 58.394 3.5143 0 0 0 0.2408 1 11508 11508 13.906 5.9959 1 35653 2425;4314 22745 22756 40824 40824 0.05437441951130495 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN48_class_I_Rep_1 5 559.3119506835938 2 559.311284 1116.60801 NaN NaN NaN NaN NaN NaN NaN 54.515 1 58.03 57.53 58.53 3.5143 0 0 0 0.31276 1 11550 11550 10.074 5.7447 1 35654 2425;4314 22745 22756 40825 40825 0.05437441951130495 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_2 6 559.3113403320312 2 559.311284 1116.60801 0.57521 0.00032172 -0.2115 -0.00011829 0.36371 0.00020343 559.3109921500479 53.791 0.94901 57.386 56.889 57.838 3.595 155 65 3 0 0 0 0.047711 7 11213 11200;11213;11242;11286;11360;11399;11407 49.933 37.401 1 376380 35655 2425;4314 22745 22756 40826;40827;40828;40829;40830;40831;40832 40827 0.05437441951130495 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN48_class_I_Rep_2 6 559.3113403320312 2 559.311284 1116.60801 NaN NaN NaN NaN NaN NaN NaN 54.318 1 57.899 57.399 58.399 3.5817 0 0 0 0.10941 1 11469 11469 22.736 6.8891 1 35656 2425;4314 22745 22756 40833 40833 0.05437441951130495 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_3 7 559.3110961914062 2 559.311284 1116.60801 0.26681 0.00014923 0.019853 1.1104E-05 0.28666 0.00016033 559.3111475979235 53.734 0.94669 57.318 56.906 57.853 3.5836 156 68 3 0 0 0 0.01718 4 11291 11183;11210;11291;11339 65.235 43.488 1 521190 35657 2425;4314 22745 22756 40834;40835;40836;40837 40836 0.05437441951130495 RIHFPLATY 9 Unmodified _RIHFPLATY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MSMS UPN48_class_I_Rep_3 7 559.3116455078125 2 559.311284 1116.60801 NaN NaN NaN NaN NaN NaN NaN 54.294 1 57.863 57.363 58.363 3.5694 0 0 0 0.31276 1 11400 11400 10.074 5.3179 1 35658 2425;4314 22745 22756 40838 40838 0.05437441951130495 RIHILHSL 8 Unmodified _RIHILHSL_ 0 0 0 L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|150|2|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|150|2|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|150|2|anti-sense MSMS UPN47_class_I_Rep_3 4 494.80609130859375 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 75.333 1 78.579 78.079 79.079 3.2464 0 0 0 0.40625 1 18683 18683 2.3027 0 1 35659 8983 22746 22757 40839 40839 0.10348879016555657 RIHQAMFCT 9 Unmodified _RIHQAMFCT_ 0 0 0 REV__L1ME1_dup2966|chr2:31849593-31850250:-|1.5105075870854017|0.0347257710109234|5.44|151.0|42|2|anti-sense REV__L1ME1_dup2966|chr2:31849593-31850250:-|1.5105075870854017|0.0347257710109234|5.44|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.7652587890625 2 553.765329 1105.5161 NaN NaN NaN NaN NaN NaN NaN 18.614 1 22.003 21.503 22.503 3.3898 0 0 0 0.39428 1 1604 1604 2.0598 0 1 + 35660 27749 22747 22758 40840 40840 -0.032433077292125745 RIIDESYNL 9 Unmodified _RIIDESYNL_ 0 0 0 nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4 nc|ENSG00000145949|Q86YV6-2|MYLK4 nc|ENSG00000145949|Q86YV6-2|MYLK4 MULTI-MSMS UPN47_class_I_Rep_1 2 561.7930908203125 2 561.793121 1121.57169 0.20425 0.00011475 0.040127 2.2543E-05 0.24438 0.00013729 561.7929980375264 48.562 0.80942 52.243 51.953 52.763 3.6819 111 52 3 0 0 0 0.048729 3 10513 10470;10513;10561 49.527 16.082 1 241130 35661 3419 22748 22759 40841;40842;40843 40842 0.0157652026375672 RIIDESYNL 9 Unmodified _RIIDESYNL_ 0 0 0 nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4 nc|ENSG00000145949|Q86YV6-2|MYLK4 nc|ENSG00000145949|Q86YV6-2|MYLK4 MULTI-MSMS UPN47_class_I_Rep_2 3 561.7938232421875 2 561.793121 1121.57169 0.38964 0.0002189 -0.14029 -7.8816E-05 0.24934 0.00014008 561.7929714981326 48.982 0.718 52.329 52.057 52.775 3.3465 107 48 3 0 0 0 0.16799 3 10598 10598;10685;10734 23.79 11.44 1 260950 35662 3419 22748 22759 40844;40845;40846 40844 0.0157652026375672 RIIDESYNL 9 Unmodified _RIIDESYNL_ 0 0 0 nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4 nc|ENSG00000145949|Q86YV6-2|MYLK4 nc|ENSG00000145949|Q86YV6-2|MYLK4 MULTI-MSMS UPN47_class_I_Rep_3 4 561.793212890625 2 561.793121 1121.57169 0.43757 0.00024583 0.10893 6.1194E-05 0.5465 0.00030702 561.7930549263715 49.068 0.86042 52.302 52.045 52.905 3.2345 109 52 3 0 0 0 0.12795 3 10738 10695;10738;10779 28.495 6.9575 1 258550 35663 3419 22748 22759 40847;40848;40849 40848 0.0157652026375672 RIIDVVYNA 9 Unmodified _RIIDVVYNA_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS UPN47_class_I_Rep_1 2 531.8006591796875 2 531.800749 1061.58694 0.25483 0.00013552 -0.042552 -2.2629E-05 0.21228 0.00011289 531.8005508122669 51.618 0.78098 55.212 54.917 55.698 3.5932 97 45 3 0 0 0 0.086321 2 11427 11427;11469 37.075 17.818 1 413340 35664 3269 22749 22760 40850;40851 40850 0.058614318515992636 RIIDVVYNA 9 Unmodified _RIIDVVYNA_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS UPN47_class_I_Rep_2 3 531.80078125 2 531.800749 1061.58694 0.35114 0.00018674 -0.11768 -6.2584E-05 0.23346 0.00012415 531.8004952180939 51.993 0.84235 55.326 54.909 55.751 3.3332 103 52 3 0 0 0 0.10568 3 11536 11536;11577;11619 32.786 16.939 1 389800 35665 3269 22749 22760 40852;40853;40854 40852 0.058614318515992636 RIIDVVYNA 9 Unmodified _RIIDVVYNA_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS UPN47_class_I_Rep_3 4 531.801025390625 2 531.800749 1061.58694 0.46851 0.00024915 -0.18419 -9.7953E-05 0.28432 0.0001512 531.800485204854 52.228 0.80296 55.434 55.033 55.836 3.2055 119 59 3 0 0 0 0.073198 4 11664 11664;11701;11740;11752 40.239 24.392 1 415840 35666 3269 22749 22760 40855;40856;40857;40858 40855 0.058614318515992636 RIIEETLAL 9 Unmodified _RIIEETLAL_ 0 0 0 ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2 ENST00000489598.5_1_2:219082193-219099125:+|nuORF ENST00000489598.5_1_2:219082193-219099125:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 529.31640625 2 529.316232 1056.61791 0.43396 0.0002297 -0.1416 -7.495E-05 0.29236 0.00015475 529.3160450327293 58.283 1.0159 61.769 61.309 62.325 3.487 147 61 3 0 0 0 0.066364 4 12723 12639;12680;12723;12762 41.956 10.547 1 958400 35667 4004 22750 22761 40859;40860;40861;40862 40861 0.09186585165844008 RIIEETLAL 9 Unmodified _RIIEETLAL_ 0 0 0 ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2 ENST00000489598.5_1_2:219082193-219099125:+|nuORF ENST00000489598.5_1_2:219082193-219099125:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 529.316162109375 2 529.316232 1056.61791 0.51013 0.00027002 -0.18207 -9.6374E-05 0.32806 0.00017365 529.3160416294585 58.194 1.0835 61.693 61.239 62.322 3.4987 156 65 3 0 0 0 0.053261 6 12650 12568;12609;12650;12693;12731;12778 47.594 19.966 1 1311400 35668 4004 22750 22761 40863;40864;40865;40866;40867;40868 40865 0.09186585165844008 RIIEETLAL 9 Unmodified _RIIEETLAL_ 0 0 0 ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2 ENST00000489598.5_1_2:219082193-219099125:+|nuORF ENST00000489598.5_1_2:219082193-219099125:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 529.3162841796875 2 529.316232 1056.61791 0.42219 0.00022347 -0.068025 -3.6006E-05 0.35416 0.00018746 529.3160752084761 57.915 0.96049 61.447 61.191 62.151 3.5317 160 62 3 0 0 0 0.048662 4 12493 12493;12533;12578;12622 49.554 15.153 1 1004800 35669 4004 22750 22761 40869;40870;40871;40872 40869 0.09186585165844008 RIIKEKYFF 9 Unmodified _RIIKEKYFF_ 0 0 0 MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|86|1|anti-sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|86|1|anti-sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|86|1|anti-sense MSMS UPN47_class_I_Rep_1 2 621.9008178710938 2 622.363516 1242.71248 NaN NaN NaN NaN NaN NaN NaN 71.018 1 74.393 73.893 74.893 3.3751 0 0 0 0.4007 1 17291 17291 0.52476 0 1 35670 15962 22751 22762 40873 40873 0.10083143707834097 RIIVVFHF 8 Unmodified _RIIVVFHF_ 0 0 0 REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|181|3|anti-sense REV__L1MA8_dup6675|chrX:155591651-155594855:+|1.3339420807382287|0.0633743223206394|4.4|150.0|181|3|anti-sense MSMS UPN48_class_I_Rep_3 7 515.8120727539062 2 515.813462 1029.61237 NaN NaN NaN NaN NaN NaN NaN 54.188 1 57.758 57.258 58.258 3.5694 0 0 0 0.4032 1 11368 11368 6.3541 0 1 + 35671 25567 22752 22763 40874 40874 0.09874951164692902 RIKAQQAK 8 Unmodified _RIKAQQAK_ 0 0 0 REV__L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|7|1|sense REV__L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 56.22 1 59.392 58.892 59.892 3.1721 0 0 0 0.40625 1 12907 12907 2.3027 0 1 + 35672 28883 22753 22764 40875 40875 0.1039228863688777 RIKFLRCFR 9 Unmodified _RIKFLRCFR_ 0 0 0 L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|92|3|anti-sense L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|92|3|anti-sense L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|92|3|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8696899414062 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 85.405 1 88.997 88.497 89.497 3.5914 0 0 0 0.4007 1 21327 21327 0.52476 0 1 35673 14135 22754 22765 40876 40876 0.11364847881259266 RIKGVLKY 8 Unmodified _RIKGVLKY_ 0 0 0 ERV3-16A3_I-int_dup2973|chr7:45051990-45052332:-|1.525240452067898|0.0205241696247056|6.22|151.0|16|2|anti-sense ERV3-16A3_I-int_dup2973|chr7:45051990-45052332:-|1.525240452067898|0.0205241696247056|6.22|151.0|16|2|anti-sense ERV3-16A3_I-int_dup2973|chr7:45051990-45052332:-|1.525240452067898|0.0205241696247056|6.22|151.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.8193054199219 2 488.818744 975.622936 NaN NaN NaN NaN NaN NaN NaN 47 1 47 46.5 47.5 0 0 0 0 0.40738 1 9682 9682 0.79363 0 1 35674 7708 22755 22766 40877 40877 0.1341493381911505 RIKHWNEF 8 Unmodified _RIKHWNEF_ 0 0 0 REV__L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|111|2|sense REV__L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|111|2|sense MSMS UPN46_class_I_Rep_3 1 564.8602905273438 2 565.298707 1128.58286 NaN NaN NaN NaN NaN NaN NaN 100.9 1 100.9 100.4 101.4 0 0 0 0 0.40746 1 24609 24609 0.69038 0 1 + 35675 30029 22756 22767 40878 40878 0.023713871485369964 RIKRKKQEM 9 Unmodified _RIKRKKQEM_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53114333-53114504:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS UPN48_class_I_Rep_2 6 406.2481384277344 3 406.248408 1215.72339 NaN NaN NaN NaN NaN NaN NaN 110.62 1 114.29 113.79 114.79 3.669 0 0 0 0.40177 1 26314 26314 0.26902 0 1 35676 5040 22757 22768 40879 40879 0.1241622281047512 RIKRKKQEM 9 Unmodified _RIKRKKQEM_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53114333-53114504:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS UPN48_class_I_Rep_3 7 406.2486572265625 3 406.248408 1215.72339 NaN NaN NaN NaN NaN NaN NaN 81.128 1 84.791 84.291 85.291 3.6635 0 0 0 0.40177 1 19203 19203 0.26902 0 1 35677 5040 22757 22768 40880 40880 0.1241622281047512 RIKRWKLSW 9 Unmodified _RIKRWKLSW_ 0 0 0 ENST00000459737.5_1_14:56079280-56084690:+|nuORF ENST00000459737.5_1_14:56079280-56084690:+|nuORF ENST00000459737.5_1_14:56079280-56084690:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 637.3892822265625 2 636.888024 1271.7615 0.57053 0.00036336 -0.47925 -0.00030523 0.091281 5.8136E-05 636.8874879761878 108.66 0.44942 112.3 112.17 112.62 3.6355 132 42 4 0 0 0 0.46869 1 26681 26681 3.9444 0.66309 1 31376000 35678 6850 22758 22769 40881 40881 0.13648476787443542 RIKRWKLSW 9 Unmodified _RIKRWKLSW_ 0 0 0 ENST00000459737.5_1_14:56079280-56084690:+|nuORF ENST00000459737.5_1_14:56079280-56084690:+|nuORF ENST00000459737.5_1_14:56079280-56084690:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 636.88818359375 2 636.888024 1271.7615 0.63456 0.00040414 -0.4906 -0.00031245 0.14396 9.1689E-05 636.8876108253568 108.67 0.59799 112.2 112.07 112.67 3.5333 180 69 3 0 0 0 0.46869 1 26347 26347 3.9444 3.9444 1 35993000 35679 6850 22758 22769 40882 40882 0.13648476787443542 RIKRWKLSW 9 Unmodified _RIKRWKLSW_ 0 0 0 ENST00000459737.5_1_14:56079280-56084690:+|nuORF ENST00000459737.5_1_14:56079280-56084690:+|nuORF ENST00000459737.5_1_14:56079280-56084690:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 636.8885498046875 2 636.888024 1271.7615 0.49808 0.00031722 -0.54474 -0.00034694 -0.04666 -2.9717E-05 636.8874914563645 108.75 0.57068 112.42 112.23 112.8 3.6746 111 57 2 0 0 0 0.49026 1 25760 25760 1.6526 0.32309 1 16017000 35680 6850 22758 22769 40883 40883 0.13648476787443542 RIKYRTTR 8 Unmodified _RIKYRTTR_ 0 0 0 REV__L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|24|1|sense REV__L1MB2_dup806|chr2:63186892-63188500:-|1.2878619686131447|0.030392676524173|5.41|151.0|24|1|sense MSMS UPN47_class_I_Rep_2 3 547.333251953125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 83.433 1 86.845 86.345 87.345 3.4116 0 0 0 0.40746 1 20797 20797 0.69038 0 1 + 35681 25775 22759 22770 40884 40884 0.108990514482457 RILCLELRGA 10 Unmodified _RILCLELRGA_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|55|2|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|55|2|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|55|2|sense MSMS UPN48_class_I_Rep_3 7 572.3351440429688 2 572.336975 1142.6594 NaN NaN NaN NaN NaN NaN NaN 60.321 1 63.838 63.338 64.338 3.5169 0 0 0 0.53105 1 13242 13242 2.4985 0 1 35682 16069 22760 22771 40885 40885 0.09377442653544676 RILDGSLGF 9 Unmodified _RILDGSLGF_ 0 0 0 ENSG00000133195|ENST00000255559|SLC39A11;nc|ENSG00000133195|Q8N1S5|SLC39A11;ENST00000581005.1_1_17:71069947-71084903:-|nuORF ENSG00000133195|ENST00000255559|SLC39A11 ENSG00000133195|ENST00000255559|SLC39A11 MULTI-MSMS UPN48_class_I_Rep_2 6 489.27447509765625 2 489.274367 976.53418 0.31361 0.00015344 0.082269 4.0252E-05 0.39588 0.00019369 489.2744742540459 61.994 0.30833 65.468 65.258 65.566 3.4738 34 23 2 0 0 0 0.24936 1 13817 13817 17.113 1.2657 1 90732 35683 2795 22761 22772 40886 40886 0.044974737888196614 RILIPKTFKI 10 Unmodified _RILIPKTFKI_ 0 0 0 L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|64|3|sense L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|64|3|sense L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|64|3|sense MSMS UPN46_class_I_Rep_3 1 614.9114379882812 2 614.910633 1227.80671 NaN NaN NaN NaN NaN NaN NaN 63.184 1 63.184 62.684 63.684 0 0 0 0 0.53105 1 14175 14175 0.40072 0 1 35684 13386 22762 22773 40887 40887 0.2019228252997891 RILKFMLLDV 10 Unmodified _RILKFMLLDV_ 0 0 0 L1MC5a_dup6171|chr6:33408091-33408348:-|1.0974549106077247|0.2067754861817605|2.41|150.0|12|3|sense L1MC5a_dup6171|chr6:33408091-33408348:-|1.0974549106077247|0.2067754861817605|2.41|150.0|12|3|sense L1MC5a_dup6171|chr6:33408091-33408348:-|1.0974549106077247|0.2067754861817605|2.41|150.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 624.3807373046875 2 624.380852 1246.74715 NaN NaN NaN NaN NaN NaN NaN 64.576 1 64.576 64.076 65.076 0 0 0 0 0.53105 1 14543 14543 1.6526 0.17072 1 35685 11759 22763 22774 40888 40888 0.13364643524300845 RILKKKLGM 9 Unmodified _RILKKKLGM_ 0 0 0 ENST00000581223.2_17:21911572-21911938:+|nuORF ENST00000581223.2_17:21911572-21911938:+|nuORF ENST00000581223.2_17:21911572-21911938:+|nuORF MSMS UPN48_class_I_Rep_1 5 543.7427368164062 2 543.862629 1085.71071 NaN NaN NaN NaN NaN NaN NaN 113.96 1 117.59 117.09 118.09 3.6314 0 0 0 0.40038 1 27693 27693 0.6015 0 1 35686 7557 22764 22775 40889 40889 0.17127811418254169 RILKLRYR 8 Unmodified _RILKLRYR_ 0 0 0 MLT1C_dup11057|chrX:97480031-97480484:+|1.0803146416393774|0.003103791939063|8.44|151.0|24|2|anti-sense MLT1C_dup11057|chrX:97480031-97480484:+|1.0803146416393774|0.003103791939063|8.44|151.0|24|2|anti-sense MLT1C_dup11057|chrX:97480031-97480484:+|1.0803146416393774|0.003103791939063|8.44|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.3693237304688 2 559.369467 1116.72438 NaN NaN NaN NaN NaN NaN NaN 98.04 1 101.82 101.32 102.32 3.779 0 0 0 0.40746 1 23290 23290 0.69038 0 1 35687 16290 22765 22776 40890 40890 0.1706880524168355 RILPVMCYI 9 Unmodified _RILPVMCYI_ 0 0 0 REV__L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|7|1|sense REV__L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 554.30615234375 2 554.306298 1106.59804 NaN NaN NaN NaN NaN NaN NaN 70.144 1 73.427 72.927 73.927 3.2828 0 0 0 0.35339 1 17073 17073 7.9102 1.187 1 + 35688 27640 22766 22777 40891 40891 0.04900794629884331 RILSLLLLHLL 11 Unmodified _RILSLLLLHLL_ 0 0 0 L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|231|1|anti-sense L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|231|1|anti-sense L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|231|1|anti-sense MSMS UPN48_class_I_Rep_1 5 435.29974365234375 3 435.298986 1302.87513 NaN NaN NaN NaN NaN NaN NaN 68.508 1 71.959 71.459 72.459 3.4517 0 0 0 0.38417 1 15824 15824 1.0136 0.6843 1 35689 15068 22767 22778 40892 40892 0.2358052710985703 RIMKKRKNP 9 Unmodified _RIMKKRKNP_ 0 0 0 L1PA13_dup1278|chr3:52592431-52593255:-|3.9252467971045504|0.0782881204607308|5.65|151.0|4|1|sense L1PA13_dup1278|chr3:52592431-52593255:-|3.9252467971045504|0.0782881204607308|5.65|151.0|4|1|sense L1PA13_dup1278|chr3:52592431-52593255:-|3.9252467971045504|0.0782881204607308|5.65|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 585.86669921875 2 585.866234 1169.71792 NaN NaN NaN NaN NaN NaN NaN 20.871 1 24.538 24.038 25.038 3.6667 0 0 0 0.4007 1 1863 1863 0.52476 0 1 35690 13732 22768 22779 40893 40893 0.1398454401867184 RIMNLTVML 9 2 Oxidation (M) _RIM(Oxidation (M))NLTVM(Oxidation (M))L_ RIM(1)NLTVM(1)L RIM(46)NLTVM(46)L 0 0 2 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS UPN47_class_I_Rep_2 3 561.8041381835938 2 561.804119 1121.59369 0.51671 0.00029029 -0.43717 -0.0002456 0.079543 4.4687E-05 561.8037918603727 53.215 0.80839 56.542 56.264 57.072 3.3266 103 50 3 0 0 0 0.057664 3 11953 11910;11953;11994 45.7 19.752 1 244230 35691 2326 22769 22780 40894;40895;40896 40895 77;78 0.03775285416327279 RIMRHAKKQ 9 Unmodified _RIMRHAKKQ_ 0 0 0 L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3477783203125 2 584.348209 1166.68186 0.13515 7.8973E-05 -0.028981 -1.6935E-05 0.10617 6.2038E-05 584.3480877576318 24.107 0.11288 24.107 24.059 24.172 0 18 10 3 0 0 0 0.50088 1 3130 3130 0.52476 0 1 75457 35692 13440 22770 22781 40897 40897 0.10519086841804892 RIMRHAKKQ 9 Unmodified _RIMRHAKKQ_ 0 0 0 L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.347900390625 2 584.348209 1166.68186 0.24221 0.00014154 -0.15206 -8.8854E-05 0.090156 5.2682E-05 584.3479706718741 28.969 0.10253 28.969 28.908 29.01 0 16 6 3 0 0 0 0.50088 1 4520 4520 0.52476 0 1 202070 35693 13440 22770 22781 40898 40898 0.10519086841804892 RIMRHAKKQ 9 Unmodified _RIMRHAKKQ_ 0 0 0 L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|5|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 584.3482666015625 2 584.348209 1166.68186 0.19199 0.00011219 -0.32543 -0.00019016 -0.13344 -7.7975E-05 584.3479324787448 26.664 0.2927 26.664 26.51 26.802 0 39 22 3 0 0 0 0.12462 1 3865 3865 1.8442 1.8442 1 585180 35694 13440 22770 22781 40899 40899 0.10519086841804892 RIMWRRRQY 9 Unmodified _RIMWRRRQY_ 0 0 0 REV__ENSG00000186160|ENST00000334194|CYP4Z1 REV__ENSG00000186160|ENST00000334194|CYP4Z1 MULTI-MSMS UPN47_class_I_Rep_1 2 455.9221496582031 3 455.587535 1363.74078 -0.41684 -0.00018991 0.68715 0.00031306 0.2703 0.00012315 455.5878615735717 18.419 0.12473 21.999 21.899 22.024 3.5806 20 14 2 0 0 0 0.49676 1 1543 1543 0.96228 0.45632 1 23878 + 35695 20880 22771 22782 40900 40900 0.07345563136141209 RINFSLYI 8 Unmodified _RINFSLYI_ 0 0 0 MSTD_dup7432|chr21:34828575-34828908:+|7.338896110881117|0.0671241792423677|6.77|151.0|4|1|sense MSTD_dup7432|chr21:34828575-34828908:+|7.338896110881117|0.0671241792423677|6.77|151.0|4|1|sense MSTD_dup7432|chr21:34828575-34828908:+|7.338896110881117|0.0671241792423677|6.77|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 513.29052734375 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 80.418 1 80.418 79.918 80.918 0 0 0 0 0.40625 1 18942 18942 2.3027 0 1 35696 16601 22772 22783 40901 40901 0.059263506854904335 RINIGRAA 8 Unmodified _RINIGRAA_ 0 0 0 REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1 REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1 MULTI-MSMS UPN48_class_I_Rep_1 5 435.7670593261719 2 435.767043 869.519533 -0.024577 -1.071E-05 0.023149 1.0088E-05 -0.0014273 -6.2198E-07 435.7669555585428 78.887 0.87217 82.422 81.991 82.863 3.5352 211 108 3 0 0 0 0.82752 1 18749 18749 2.3027 0.24298 1 398400 + 35697 20703 22773 22784 40902 40902 0.07955446431321889 RININGTKN 9 Unmodified _RININGTKN_ 0 0 0 REV__L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|11|2|sense REV__L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 515.3079833984375 2 515.293622 1028.57269 NaN NaN NaN NaN NaN NaN NaN 67.067 1 70.563 70.063 71.063 3.4964 0 0 0 0.37692 1 15371 15371 6.2058 0.9089 1 + 35698 28529 22774 22785 40903 40903 0.05954779423313994 RINLHTRLKKR 11 Unmodified _RINLHTRLKKR_ 0 0 0 REV__LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense REV__LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense MSMS UPN47_class_I_Rep_3 4 479.3092956542969 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 45.463 1 48.707 48.207 49.207 3.2441 0 0 0 0.38417 1 9635 9635 0.094841 0 1 + 35699 30820 22775 22786 40904 40904 0.20593698547554595 RINRRLRRRLI 11 Unmodified _RINRRLRRRLI_ 0 0 0 REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|39|2|sense REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|39|2|sense MSMS UPN46_class_I_Rep_3 1 508.0704345703125 3 508.006081 1520.99641 NaN NaN NaN NaN NaN NaN NaN 72.019 1 72.019 71.519 72.519 0 0 0 0 0.38417 1 16623 16623 0 0 1 + 35700 23474 22776 22787 40905 40905 0.2567558731573172 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-SECPEP UPN47_class_I_Rep_1 2 533.3085327148438 2 533.30821 1064.60187 0.3745 0.00019972 0.42984 0.00022924 0.80434 0.00042896 533.3084426096214 61.8 0.78576 65.168 64.897 65.683 3.3681 119 58 3 0 0 0 0.063482 1 14552 14552 26.268 8.1218 1 209540 35701 5522 22777 22788 40906 40906 0.07214923719607214 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-SECPEP UPN47_class_I_Rep_2 3 533.1912231445312 2 533.30821 1064.60187 0.31536 0.00016819 0.46472 0.00024784 0.78008 0.00041602 533.3087172682733 62.443 0.38326 65.703 65.613 65.997 3.2594 33 22 2 0 0 0 0.12157 1 14766 14766 6.2058 1.8765 1 75732 35702 5522 22777 22788 40907 40907 0.07214923719607214 RIPAYFVTV 9 Unmodified _RIPAYFVTV_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;ENST00000461874.1_1_6:31749609-31749932:-|nuORF;ENST00000483275.1_1_6:31749724-31750195:-|nuORF ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-SECPEP UPN47_class_I_Rep_2 3 533.3082275390625 2 533.30821 1064.60187 0.32752 0.00017467 0.70447 0.0003757 1.032 0.00055037 533.3085613290549 62.212 0.64701 65.471 64.966 65.613 3.2594 99 46 3 0 0 0 0.043847 1 14660 14660 39.95 10.868 1 221580 35703 5522 22777 22788 40908 40908 0.07214923719607214 RIPFFRGVK 9 Unmodified _RIPFFRGVK_ 0 0 0 REV__ENST00000373204.5_1_1:36388990-36389218:+|nuORF REV__ENST00000373204.5_1_1:36388990-36389218:+|nuORF MSMS UPN48_class_I_Rep_1 5 560.3411865234375 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 79.713 1 83.262 82.762 83.762 3.5487 0 0 0 0.38639 1 19038 19038 3.9444 1.3669 1 + 35704 21985 22778 22789 40909 40909 0.11669427459014514 RIPFFRGVK 9 Unmodified _RIPFFRGVK_ 0 0 0 REV__ENST00000373204.5_1_1:36388990-36389218:+|nuORF REV__ENST00000373204.5_1_1:36388990-36389218:+|nuORF MSMS UPN48_class_I_Rep_3 7 560.341064453125 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 79.146 1 82.788 82.288 83.288 3.6423 0 0 0 0.38639 1 18758 18758 3.9444 0.3479 1 + 35705 21985 22778 22789 40910 40910 0.11669427459014514 RIPGSHGK 8 Unmodified _RIPGSHGK_ 0 0 0 L1MB8_dup13572|chr16:17432104-17432697:+|1.1423034411815012|0.0279161679282472|5.35|151.0|32|2|anti-sense L1MB8_dup13572|chr16:17432104-17432697:+|1.1423034411815012|0.0279161679282472|5.35|151.0|32|2|anti-sense L1MB8_dup13572|chr16:17432104-17432697:+|1.1423034411815012|0.0279161679282472|5.35|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 426.245849609375 2 426.245944 850.477334 -0.078848 -3.3609E-05 0.14421 6.147E-05 0.065364 2.7861E-05 426.24593724159837 82.881 1.5692 86.469 85.518 87.087 3.5871 310 184 2 0 0 0 0.82752 1 19845 19845 4.3292 1.7518 1 450170 35706 10942 22779 22790 40911 40911 0.046114710229517186 RIPIICFRM 9 Unmodified _RIPIICFRM_ 0 0 0 REV__L1MA6_dup3557|chr10:26546775-26547431:-|1.925175514053095|0.0172575426931016|6.8|150.0|23|3|sense REV__L1MA6_dup3557|chr10:26546775-26547431:-|1.925175514053095|0.0172575426931016|6.8|150.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 574.8257446289062 2 574.825189 1147.63583 NaN NaN NaN NaN NaN NaN NaN 46.555 1 49.799 49.299 50.299 3.2439 0 0 0 0.39518 1 9970 9970 1.8442 0 1 + 35707 25459 22780 22791 40912 40912 0.06791305615365673 RIPRNPVV 8 Unmodified _RIPRNPVV_ 0 0 0 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 MSMS UPN48_class_I_Rep_1 5 475.81732177734375 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 41.767 1 45.275 44.775 45.775 3.5079 0 0 0 0.40746 1 7650 7650 0.69038 0 1 35708 16704 22781 22792 40913 40913 0.10532592499509974 RIQKDYRRI 9 Unmodified _RIQKDYRRI_ 0 0 0 L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|63|3|sense L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|63|3|sense L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|63|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 624.3731689453125 2 624.370195 1246.72584 0.677 0.0004227 2.3489 0.0014666 3.0259 0.0018893 624.8733022509806 95.39 0.26437 95.39 95.157 95.422 0 41 24 2 0 0 0 0.48846 1 23104 23104 1.8442 0 1 6989900 35709 10630 22782 22793 40914 40914 0.1123439453976971 RIQLFLIF 8 Unmodified _RIQLFLIF_ 0 0 0 AluJr_dup35310|chr7:152426231-152426536:-|1.0401469356785118|0.0062735453303273|7.37|151.0|22|3|anti-sense AluJr_dup35310|chr7:152426231-152426536:-|1.0401469356785118|0.0062735453303273|7.37|151.0|22|3|anti-sense AluJr_dup35310|chr7:152426231-152426536:-|1.0401469356785118|0.0062735453303273|7.37|151.0|22|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 524.8267822265625 2 525.328945 1048.64334 0.29678 0.00015591 -0.55552 -0.00029183 -0.25874 -0.00013593 525.3286675559222 90.858 0.037781 94.484 94.45 94.488 3.626 7 4 2 0 0 0 0.72333 1 21831 21831 0.79363 0 1 53159 35710 147 22783 22794 40915 40915 0.12096104478928282 RIQLLRYF 8 Unmodified _RIQLLRYF_ 0 0 0 REV__ENSG00000169188|ENST00000374987|APEX2 REV__ENSG00000169188|ENST00000374987|APEX2 MSMS UPN47_class_I_Rep_3 4 554.8335571289062 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 86.963 1 90.344 89.844 90.844 3.3801 0 0 0 0.40738 1 21793 21793 0.79363 0 1 + 35711 20303 22784 22795 40916 40916 0.1057772122210281 RIQLTREA 8 Unmodified _RIQLTREA_ 0 0 0 L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|58|2|sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|58|2|sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|58|2|sense MSMS UPN46_class_I_Rep_3 1 494.2349853515625 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 115.42 1 115.42 114.92 115.92 0 0 0 0 0.40753 1 28547 28547 0.6015 0 1 35712 13746 22785 22796 40917 40917 0.07351680911642688 RIQVLLQF 8 Unmodified _RIQVLLQF_ 0 0 0 REV__ENSG00000176903|ENST00000316836|PNMA1 REV__ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS UPN48_class_I_Rep_1 5 508.8161926269531 2 508.816202 1015.61785 0.30236 0.00015384 -0.34892 -0.00017754 -0.046566 -2.3694E-05 508.8159991889304 66.635 0.55801 70.087 69.841 70.399 3.4516 55 35 2 0 0 0 0.82752 1 15254 15254 34.102 3.4659 1 111510 + 35713 20599 22786 22797 40918 40918 0.11066629956519591 RIREQSILSR 10 Unmodified _RIREQSILSR_ 0 0 0 REV__L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|27|1|sense REV__L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|27|1|sense MSMS UPN47_class_I_Rep_3 4 629.3834228515625 2 629.372935 1256.73132 NaN NaN NaN NaN NaN NaN NaN 69.783 1 72.987 72.487 73.487 3.2044 0 0 0 0.53105 1 17035 17035 3.2813 0.28607 1 + 35714 24278 22787 22798 40919 40919 0.11322073331598403 RIRFPWLKT 9 Unmodified _RIRFPWLKT_ 0 0 0 REV__ENST00000567757.1_1_16:21974170-21974233:+|nuORF REV__ENST00000567757.1_1_16:21974170-21974233:+|nuORF MSMS UPN48_class_I_Rep_1 5 406.24847412109375 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 79.888 1 83.437 82.937 83.937 3.5487 0 0 0 0.39244 1 19083 19083 2.4985 0 1 + 35715 23072 22788 22799 40920 40920 0.12481385521800803 RIRFPWLKT 9 Unmodified _RIRFPWLKT_ 0 0 0 REV__ENST00000567757.1_1_16:21974170-21974233:+|nuORF REV__ENST00000567757.1_1_16:21974170-21974233:+|nuORF MSMS UPN48_class_I_Rep_2 6 406.248291015625 3 406.248625 1215.72405 NaN NaN NaN NaN NaN NaN NaN 80.544 1 84.188 83.688 84.688 3.6446 0 0 0 0.39887 1 19111 19111 0.96228 0 1 + 35716 23072 22788 22799 40921 40921 0.12481385521800803 RIRGKCHT 8 Unmodified _RIRGKCHT_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MSMS UPN47_class_I_Rep_1 2 485.3165283203125 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 113.05 1 116.62 116.12 117.12 3.572 0 0 0 0.40798 1 27881 27881 0 0 1 35717 3633 22789 22800 40922 40922 0.04306891445173733 RIRGKCHT 8 Unmodified _RIRGKCHT_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MSMS UPN48_class_I_Rep_3 7 485.7718505859375 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 19.914 1 23.536 23.036 24.036 3.6215 0 0 0 0.40798 1 1595 1595 0 0 1 35718 3633 22789 22800 40923 40923 0.04306891445173733 RIRGVGWG 8 Unmodified _RIRGVGWG_ 0 0 0 REV__L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|14|3|sense REV__L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|14|3|sense MSMS UPN48_class_I_Rep_2 6 450.7718200683594 2 450.761761 899.508969 NaN NaN NaN NaN NaN NaN NaN 119.07 1 122.74 122.24 123.24 3.6652 0 0 0 0.40738 1 28567 28567 0.79363 0 1 + 35719 25919 22790 22801 40924 40924 0.055194637768863686 RIRGVGWG 8 Unmodified _RIRGVGWG_ 0 0 0 REV__L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|14|3|sense REV__L1MB3_dup8089|chr9:323521-323967:-|1.218346850411684|0.0080001830753856|7.25|150.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 450.7601013183594 2 450.761761 899.508969 NaN NaN NaN NaN NaN NaN NaN 42.636 1 46.277 45.777 46.777 3.6415 0 0 0 0.40738 1 7835 7835 0.79363 0 1 + 35720 25919 22790 22801 40925 40925 0.055194637768863686 RIRHYIIH 8 Unmodified _RIRHYIIH_ 0 0 0 L1PB3_dup2778|chr12:118222558-118222935:+|1.875426059063388|0.0055235067640109|8.41|151.0|6|1|sense L1PB3_dup2778|chr12:118222558-118222935:+|1.875426059063388|0.0055235067640109|8.41|151.0|6|1|sense L1PB3_dup2778|chr12:118222558-118222935:+|1.875426059063388|0.0055235067640109|8.41|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 554.329833984375 2 554.330342 1106.64613 NaN NaN NaN NaN NaN NaN NaN 110.98 1 114.51 114.01 115.01 3.5271 0 0 0 0.40738 1 27015 27015 0.79363 0 1 35721 15276 22791 22802 40926 40926 0.09707372656453117 RIRHYIIH 8 Unmodified _RIRHYIIH_ 0 0 0 L1PB3_dup2778|chr12:118222558-118222935:+|1.875426059063388|0.0055235067640109|8.41|151.0|6|1|sense L1PB3_dup2778|chr12:118222558-118222935:+|1.875426059063388|0.0055235067640109|8.41|151.0|6|1|sense L1PB3_dup2778|chr12:118222558-118222935:+|1.875426059063388|0.0055235067640109|8.41|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.3302612304688 2 554.330342 1106.64613 0.4949 0.00027434 -2.0972 -0.0011626 -1.6023 -0.00088821 554.8307065795702 112.88 0.076752 116.54 116.5 116.58 3.6648 11 7 2 0 0 0 0.82752 1 26913 26913 0.79363 0 1 28926 35722 15276 22791 22802 40927 40927 0.09707372656453117 RIRIKIHKDKR 11 Unmodified _RIRIKIHKDKR_ 0 0 0 L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|34|3|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|34|3|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|34|3|sense MSMS UPN46_class_I_Rep_3 1 488.3214416503906 3 488.319554 1461.93683 NaN NaN NaN NaN NaN NaN NaN 83.585 1 83.585 83.085 84.085 0 0 0 0 0.38417 1 19863 19863 0.08335 0.08335 1 35723 13163 22792 22803 40928 40928 0.2243427158164195 RIRKKKKRHWY 11 Unmodified _RIRKKKKRHWY_ 0 0 0 L1MB5_dup9638|chr22:31785028-31785981:+|1.5094892670510192|0.0566572884812213|4.74|151.0|42|1|anti-sense L1MB5_dup9638|chr22:31785028-31785981:+|1.5094892670510192|0.0566572884812213|4.74|151.0|42|1|anti-sense L1MB5_dup9638|chr22:31785028-31785981:+|1.5094892670510192|0.0566572884812213|4.74|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_1 2 533.1907958984375 3 533.667066 1597.97937 NaN NaN NaN NaN NaN NaN NaN 25.742 1 29.504 29.004 30.004 3.7624 0 0 0 0.38417 1 3580 3580 0 0 1 35724 10665 22793 22804 40929 40929 0.20429666709924277 RIRNQQKKV 9 Unmodified _RIRNQQKKV_ 0 0 0 L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|1|1|sense L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|1|1|sense L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 585.3641357421875 2 585.364913 1168.71527 NaN NaN NaN NaN NaN NaN NaN 92.241 1 92.241 91.741 92.741 0 0 0 0 0.4007 1 22315 22315 0.52476 0 1 35725 8957 22794 22805 40930 40930 0.13766411885330854 RIRSGQLI 8 Unmodified _RIRSGQLI_ 0 0 0 REV__L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|40|2|sense REV__L1PA5_dup3518|chr5:36916504-36919143:-|1.0636914008496643|0.0465710296964546|4.51|150.0|40|2|sense MSMS UPN47_class_I_Rep_1 2 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 87.503 1 91.141 90.641 91.641 3.6372 0 0 0 0.39624 1 21866 21866 9.3474 0 1 + 35726 29751 22795 22806 40931 40931 0.10392288636899139 RIRTCRPF 8 Unmodified _RIRTCRPF_ 0 0 0 REV__nc|ENSG00000005156|P49916-4|LIG3 REV__nc|ENSG00000005156|P49916-4|LIG3 MSMS UPN48_class_I_Rep_3 7 524.793701171875 2 524.795278 1047.576 NaN NaN NaN NaN NaN NaN NaN 54.216 1 57.785 57.285 58.285 3.5694 0 0 0 0.40364 1 11376 11376 5.7604 0 1 + 35727 17525 22796 22807 40932 40932 0.05411750996313458 RIRTGGKRY 9 Unmodified _RIRTGGKRY_ 0 0 0 ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|2|intron ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|2|intron ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 553.8305053710938 2 553.830706 1105.64686 0.41354 0.00022903 -1.2131 -0.00067187 -0.79959 -0.00044284 553.829917179455 85.853 0.17173 85.853 85.764 85.936 0 36 17 3 0 0 0 0.48846 1 20525 20525 1.8442 0.36234 1 510850 35728 4694 22797 22808 40933 40933 0.09826167305527633 RIRTGGKRY 9 Unmodified _RIRTGGKRY_ 0 0 0 ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|2|intron ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|2|intron ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|2|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 553.830706 1105.64686 0.41354 0.00022903 -1.2131 -0.00067187 -0.79959 -0.00044284 553.829917179455 85.853 0.17173 85.853 85.764 85.936 0 0.01063 -4.4476E-05 NaN 1.8442 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 510850 35729 4694 22797 22808 0.09826167305527633 RIRTSSFSSEK 11 Unmodified _RIRTSSFSSEK_ 0 0 0 L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|357|3|anti-sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|357|3|anti-sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|357|3|anti-sense MSMS UPN48_class_I_Rep_2 6 649.3478393554688 2 649.346583 1296.67861 NaN NaN NaN NaN NaN NaN NaN 90.996 1 94.751 94.251 95.251 3.7554 0 0 0 0.38417 1 21666 21666 4.5289 1.5336 1 35730 14190 22798 22809 40934 40934 0.04214070478110443 RIRVENVF 8 Unmodified _RIRVENVF_ 0 0 0 ENST00000559784.5_1_15:35703087-35834683:-|nuORF ENST00000559784.5_1_15:35703087-35834683:-|nuORF ENST00000559784.5_1_15:35703087-35834683:-|nuORF MSMS UPN48_class_I_Rep_2 6 516.8018188476562 2 516.801083 1031.58761 NaN NaN NaN NaN NaN NaN NaN 59.588 1 63.075 62.575 63.575 3.4868 0 0 0 0.40604 1 13085 13085 2.5775 0.27475 1 35731 7451 22799 22810 40935 40935 0.07308271291321944 RIRVIKKKKV 10 Unmodified _RIRVIKKKKV_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MSMS UPN48_class_I_Rep_3 7 634.4771728515625 2 634.456074 1266.89759 NaN NaN NaN NaN NaN NaN NaN 41.434 1 45.08 44.58 45.58 3.6458 0 0 0 0.53105 1 7483 7483 0 0 1 35732 1323 22800 22811 40936 40936 0.27482171298083813 RIRVQHIQG 9 Unmodified _RIRVQHIQG_ 0 0 0 REV__L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|14|2|sense REV__L1MCc_dup12|chr1:21129329-21130029:+|2.4587266326639905|0.0218465252976705|6.81|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 553.8298950195312 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 82.16 1 82.16 81.66 82.66 0 0 0 0 0.39518 1 19447 19447 1.8442 0 1 + 35733 27238 22801 22812 40937 40937 0.09826167305504896 RISDVHFSV 9 Unmodified _RISDVHFSV_ 0 0 0 ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 MSMS UPN47_class_I_Rep_1 2 530.2830200195312 2 530.282723 1058.55089 NaN NaN NaN NaN NaN NaN NaN 42.601 1 46.289 45.789 46.789 3.6875 0 0 0 0.34878 1 8677 8677 8.1555 3.8263 1 35734 5016 22802 22813 40938 40938 0.023959746747550525 RISDVHFSV 9 Unmodified _RISDVHFSV_ 0 0 0 ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 MULTI-MSMS UPN47_class_I_Rep_3 4 530.7843017578125 2 530.282723 1058.55089 0.070949 3.7623E-05 0.37848 0.0002007 0.44943 0.00023833 530.7845245602067 43.266 0.16794 46.508 46.492 46.66 3.2419 12 9 2 0 0 0 0.40701 2 8973 8957;8973 7.609 3.2797 1 58268 35735 5016 22802 22813 40939;40940 40940 0.023959746747550525 RISFTIDSL 9 Unmodified _RISFTIDSL_ 0 0 0 REV__L1MC4_dup2832|chr2:99913196-99914633:+|1.0744816958174983|0.0172801350047207|5.96|150.0|82|2|anti-sense REV__L1MC4_dup2832|chr2:99913196-99914633:+|1.0744816958174983|0.0172801350047207|5.96|150.0|82|2|anti-sense MSMS UPN48_class_I_Rep_2 6 526.2927856445312 2 526.292756 1050.57096 NaN NaN NaN NaN NaN NaN NaN 27.619 1 31.25 30.75 31.75 3.6311 0 0 0 0.39598 1 3684 3684 1.6526 0 1 + 35736 26902 22803 22814 40941 40941 0.04769725614710296 RISGVDRYY 9 Unmodified _RISGVDRYY_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MSMS UPN46_class_I_Rep_3 1 564.7937622070312 2 564.793455 1127.57236 NaN NaN NaN NaN NaN NaN NaN 36.883 1 36.883 36.383 37.383 0 0 0 0 0.3377 1 6886 6886 8.7454 1.4562 1 35737 2501 22804 22815 40942 40942 0.013673597034767226 RISHAVSW 8 Unmodified _RISHAVSW_ 0 0 0 MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|73|1|anti-sense;MER66-int_dup1|chr1:149683678-149685807:-|3.5901664453604702|0.4173679766776176|3.1|150.0|72|1|anti-sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|73|1|anti-sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|73|1|anti-sense MSMS UPN46_class_I_Rep_3 1 478.26953125 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 80.633 1 80.633 80.133 81.133 0 0 0 0 0.40604 1 19004 19004 2.5775 0 1 35738 16180 22805 22816 40943 40943 0.02447740194418202 RISISVTERTL 11 Unmodified _RISISVTERTL_ 0 0 0 REV__nc|ENSG00000104044|Q04671-3|OCA2 REV__nc|ENSG00000104044|Q04671-3|OCA2 MSMS UPN48_class_I_Rep_1 5 637.8738403320312 2 637.874976 1273.7354 NaN NaN NaN NaN NaN NaN NaN 100.3 1 103.91 103.41 104.41 3.6084 0 0 0 0.38417 1 24228 24228 4.897 1.6157 1 + 35739 18246 22806 22817 40944 40944 0.10948118034662002 RISLATLAI 9 Unmodified _RISLATLAI_ 0 0 0 L1MA3_dup7753|chr15:56119807-56120729:-|1.150009474229838|0.0158482754638384|6.18|151.0|57|3|anti-sense L1MA3_dup7753|chr15:56119807-56120729:-|1.150009474229838|0.0158482754638384|6.18|151.0|57|3|anti-sense L1MA3_dup7753|chr15:56119807-56120729:-|1.150009474229838|0.0158482754638384|6.18|151.0|57|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.3079833984375 2 479.30821 956.601866 0.15602 7.4781E-05 -0.12686 -6.0804E-05 0.029159 1.3976E-05 479.3081564073349 59.745 0.54969 63.143 62.879 63.429 3.3982 38 31 2 0 0 0 0.43982 1 13900 13900 5.7319 0 1 78300 35740 9626 22807 22818 40945 40945 0.12182923719592509 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 528.813720703125 2 528.813659 1055.61277 0.35222 0.00018626 -0.28558 -0.00015102 0.066642 3.5241E-05 528.8134544401428 73.065 0.71086 76.546 76.087 76.798 3.4812 139 56 4 0 0 0 0.026894 1 17176 17176 59.052 26.267 1 3475800 35741 824 22808 22819 40946 40946 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 528.8138427734375 2 528.813659 1055.61277 0.35141 0.00018583 -0.14857 -7.8566E-05 0.20284 0.00010726 528.8135601954191 73.17 0.49314 76.651 76.579 77.072 3.4812 106 45 3 0 0 0 0.006587 3 17212 17212;17250;17288 84.522 36.774 1 3790300 35742 824 22808 22819 40947;40948;40949 40947 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 528.8139038085938 2 528.813659 1055.61277 0.35045 0.00018532 -0.12308 -6.5086E-05 0.22737 0.00012024 528.8135243670364 73.695 0.1708 77.177 77.072 77.243 3.4812 50 18 3 0 0 0 0.19147 2 17361 17361;17396 21.537 7.6309 1 1154700 35743 824 22808 22819 40950;40951 40950 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 528.8133544921875 2 528.813659 1055.61277 0.35016 0.00018517 -0.55668 -0.00029438 -0.20652 -0.00010921 528.8133332408834 73.859 0.1436 77.34 77.243 77.386 3.4812 32 13 3 0 0 0 0.19147 1 17434 17434 21.537 11.463 1 255000 35744 824 22808 22819 40952 40952 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN48_class_I_Rep_1 5 528.8137817382812 2 528.813659 1055.61277 NaN NaN NaN NaN NaN NaN NaN 73.507 1 76.988 76.488 77.488 3.4812 0 0 0 0.014348 1 17327 17327 55.235 26.74 1 35745 824 22808 22819 40953 40953 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_2 6 528.8137817382812 2 528.813659 1055.61277 0.40619 0.0002148 -0.15519 -8.2065E-05 0.251 0.00013273 528.8134989520878 73.398 0.43283 76.976 76.908 77.341 3.5779 85 47 3 0 0 0 0.043808 4 17228 17228;17263;17299;17308 51.488 22.406 1 855580 35746 824 22808 22819 40954;40955;40956;40957 40954 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 528.813659 1055.61277 0.4061 0.00021475 -0.21765 -0.0001151 0.18845 9.9657E-05 528.8135227697812 73.098 0.89404 76.662 76.021 76.915 3.5645 0.0019883 4.7489E-06 NaN 84.522 296 84 4 NaN NaN NaN NaN 0 NaN NaN 0 4589500 35747 824 22808 22819 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 528.813659 1055.61277 0.53169 0.00028116 -0.45461 -0.00024041 0.077071 4.0756E-05 528.8133939229061 72.955 0.80278 76.492 75.895 76.698 3.5373 -0.027248 -6.1453E-05 NaN 59.052 191 66 4 NaN NaN NaN NaN 0 NaN NaN 0 3499600 35748 824 22808 22819 0.08718326093890028 RISLPLPNF 9 Unmodified _RISLPLPNF_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 528.813659 1055.61277 0.53027 0.00028042 -0.32231 -0.00017044 0.20796 0.00010997 528.8134503444179 73.13 0.51551 76.667 76.562 77.078 3.5373 0.0068348 -0.00010595 NaN 84.522 96 53 3 NaN NaN NaN NaN 0 NaN NaN 0 3002600 35749 824 22808 22819 0.08718326093890028 RITIEFNTF 9 Unmodified _RITIEFNTF_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS UPN48_class_I_Rep_1 5 570.8062133789062 2 570.806031 1139.59751 0.48636 0.00027762 -0.23757 -0.00013561 0.24879 0.00014201 570.8059202277991 66.234 0.64565 69.686 69.339 69.984 3.4516 72 42 2 0 0 0 0.16559 1 15096 15096 24.021 0 1 204620 + + 35750 17487 22809 22820 40958 40958 0.033294145060153824 RITIEFNTF 9 Unmodified _RITIEFNTF_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS UPN48_class_I_Rep_2 6 570.8064575195312 2 570.806031 1139.59751 0.50956 0.00029086 0.15235 8.6965E-05 0.66192 0.00037783 570.8060379508332 65.981 0.39366 69.468 69.132 69.526 3.4866 42 25 2 0 0 0 0.28552 1 15015 15015 14.838 1.7958 1 263800 + + 35751 17487 22809 22820 40959 40959 0.033294145060153824 RIVIWKCK 8 Unmodified _RIVIWKCK_ 0 0 0 REV__Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|127|2|anti-sense REV__Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|127|2|anti-sense MSMS UPN48_class_I_Rep_1 5 523.3035278320312 2 523.320597 1044.62664 NaN NaN NaN NaN NaN NaN NaN 79.199 1 82.735 82.235 83.235 3.5352 0 0 0 0.40625 1 18898 18898 2.3027 0 1 + 35752 32640 22810 22821 40960 40960 0.10611280321313643 RIVKAVVKLVK 11 Unmodified _RIVKAVVKLVK_ 0 0 0 REV__ENSG00000149218|ENST00000278505|ENDOD1 REV__ENSG00000149218|ENST00000278505|ENDOD1 MSMS UPN46_class_I_Rep_3 1 626.9443359375 2 626.945008 1251.87546 NaN NaN NaN NaN NaN NaN NaN 56.01 1 56.01 55.51 56.51 0 0 0 0 0.38417 1 12198 12198 0 0 1 + 35753 19610 22811 22822 40961 40961 0.25959946829652836 RIVMRVVK 8 Unmodified _RIVMRVVK_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MSMS UPN47_class_I_Rep_1 2 500.8276062011719 2 500.826047 999.63754 NaN NaN NaN NaN NaN NaN NaN 95.664 1 99.429 98.929 99.929 3.7648 0 0 0 0.40625 1 23745 23745 2.3027 1.5091 1 + 35754 17905 22812 22823 40962 40962 0.1377068269563324 RIVRKRYFRGL 11 Unmodified _RIVRKRYFRGL_ 0 0 0 REV__LTR45B_dup105|chr6:2334830-2335390:+|1.5200144251395633|0.0618336800691443|4.62|151.0|31|2|anti-sense REV__LTR45B_dup105|chr6:2334830-2335390:+|1.5200144251395633|0.0618336800691443|4.62|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 488.6412048339844 3 488.640516 1462.89972 NaN NaN NaN NaN NaN NaN NaN 60.864 1 64.377 63.877 64.877 3.5129 0 0 0 0.38417 1 13404 13404 0.094841 0 1 + 35755 30928 22813 22824 40963 40963 0.18678600035900672 RIWFSMME 8 Unmodified _RIWFSMME_ 0 0 0 REV__MLT1C_dup10476|chrX:1363076-1363261:-|1.930499491956884|0.3104533266196739|2.64|151.0|2|1|sense REV__MLT1C_dup10476|chrX:1363076-1363261:-|1.930499491956884|0.3104533266196739|2.64|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 550.2586059570312 2 550.256805 1098.49906 NaN NaN NaN NaN NaN NaN NaN 18.392 1 18.392 17.892 18.892 0 0 0 0 0.40625 1 1603 1603 2.3027 0.24298 1 + 35756 31626 22814 22825 40964 40964 -0.0462522833499861 RIWIEIKVI 9 Unmodified _RIWIEIKVI_ 0 0 0 L1PREC2_dup7481|chr19:54879985-54881589:-|1.0478713933467327|0.0782519982816412|3.74|146.0|23|2|sense L1PREC2_dup7481|chr19:54879985-54881589:-|1.0478713933467327|0.0782519982816412|3.74|146.0|23|2|sense L1PREC2_dup7481|chr19:54879985-54881589:-|1.0478713933467327|0.0782519982816412|3.74|146.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 585.3748779296875 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 48.532 1 52.249 51.749 52.749 3.7175 0 0 0 0.4007 1 9707 9707 0.52476 0 1 35757 15484 22815 22826 40965 40965 0.15559734087514698 RIWSHEEK 8 Unmodified _RIWSHEEK_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|67|2|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|67|2|sense MSMS UPN48_class_I_Rep_3 7 542.7804565429688 2 542.780348 1083.54614 NaN NaN NaN NaN NaN NaN NaN 20.884 1 24.551 24.051 25.051 3.6667 0 0 0 0.40625 1 1867 1867 2.3027 0 1 + 35758 25663 22816 22827 40966 40966 0.0077109053199819755 RIWWHMPVI 9 Unmodified _RIWWHMPVI_ 0 0 0 AluSx_dup51327|chr8:97662504-97662813:+|1.0174605939286612|0.0124541806243408|6.35|151.0|2|1|sense AluSx_dup51327|chr8:97662504-97662813:+|1.0174605939286612|0.0124541806243408|6.35|151.0|2|1|sense AluSx_dup51327|chr8:97662504-97662813:+|1.0174605939286612|0.0124541806243408|6.35|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 619.339111328125 2 619.336778 1236.659 NaN NaN NaN NaN NaN NaN NaN 85.831 1 85.831 85.331 86.331 0 0 0 0 0.40038 1 20497 20497 0.6015 0.076735 1 35759 292 22817 22828 40967 40967 0.05014067724346205 RIYIVIPRAI 10 Unmodified _RIYIVIPRAI_ 0 0 0 L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|26|1|sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|26|1|sense L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|26|1|sense MSMS UPN48_class_I_Rep_1 5 405.26336669921875 3 405.264164 1212.77066 NaN NaN NaN NaN NaN NaN NaN 95.379 1 98.996 98.496 99.496 3.6167 0 0 0 0.53105 1 22969 22969 0.62683 0 1 35760 13343 22818 22829 40968 40968 0.17278825353128013 RIYSWNAKK 9 Unmodified _RIYSWNAKK_ 0 0 0 L1MB3_dup16461|chr20:34465010-34466382:-|2.6973349769382176|0.1188791890204776|4.5|151.0|22|2|sense L1MB3_dup16461|chr20:34465010-34466382:-|2.6973349769382176|0.1188791890204776|4.5|151.0|22|2|sense L1MB3_dup16461|chr20:34465010-34466382:-|2.6973349769382176|0.1188791890204776|4.5|151.0|22|2|sense MSMS UPN47_class_I_Rep_1 2 583.3270874023438 2 583.327465 1164.64038 NaN NaN NaN NaN NaN NaN NaN 76.718 1 80.133 79.633 80.633 3.4149 0 0 0 0.4007 1 18998 18998 0.52476 0 1 35761 10366 22819 22830 40969 40969 0.06464229354128292 RIYYQQIY 8 Unmodified _RIYYQQIY_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|71|3|sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|71|3|sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|71|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.8013305664062 2 573.800749 1145.58694 0.5442 0.00031226 -0.04225 -2.4243E-05 0.50195 0.00028802 573.8006311442549 59.224 0.88953 62.704 62.378 63.267 3.4801 101 58 3 0 0 0 0.82752 1 13077 13077 12.532 0.29089 1 227510 35762 12636 22820 22831 40970 40970 0.019974318516233325 RKAAVPFYT 9 Unmodified _RKAAVPFYT_ 0 0 0 L1MB7_dup10394|chr8:141152241-141153049:-|2.423234249270016|0.0320239704493894|6.24|151.0|31|1|anti-sense L1MB7_dup10394|chr8:141152241-141153049:-|2.423234249270016|0.0320239704493894|6.24|151.0|31|1|anti-sense L1MB7_dup10394|chr8:141152241-141153049:-|2.423234249270016|0.0320239704493894|6.24|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 526.797119140625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 26.756 1 30.253 29.753 30.753 3.4979 0 0 0 0.39518 1 3916 3916 1.8442 0 1 35763 10672 22821 22832 40971 40971 0.05773753059793307 RKAEQKNI 8 Unmodified _RKAEQKNI_ 0 0 0 L1ME1_dup29924|chr20:49866564-49867610:-|1.6865924415468545|0.10749634635142|3.97|151.0|12|1|sense L1ME1_dup29924|chr20:49866564-49867610:-|1.6865924415468545|0.10749634635142|3.97|151.0|12|1|sense L1ME1_dup29924|chr20:49866564-49867610:-|1.6865924415468545|0.10749634635142|3.97|151.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 493.7891540527344 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 23.834 1 27.603 27.103 28.103 3.769 0 0 0 0.40643 1 2677 2677 2.0598 0 1 35764 12382 22822 22833 40972 40972 0.07351680911654057 RKAKFSQSKK 10 Unmodified _RKAKFSQSKK_ 0 0 0 REV__Charlie18a_dup423|chr2:233062839-233063076:-|2.354993416061789|0.003682312357646|9.32|151.0|21|3|anti-sense REV__Charlie18a_dup423|chr2:233062839-233063076:-|2.354993416061789|0.003682312357646|9.32|151.0|21|3|anti-sense MSMS UPN46_class_I_Rep_3 1 604.3665161132812 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 105.47 1 105.47 104.97 105.97 0 0 0 0 0.53105 1 25729 25729 0.40072 0.40072 1 + 35765 17293 22823 22834 40973 40973 0.12459876308253115 RKAKILKIRAL 11 Unmodified _RKAKILKIRAL_ 0 0 0 L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|59|2|sense L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|59|2|sense L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|59|2|sense MSMS UPN47_class_I_Rep_3 4 437.2677917480469 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 52.349 1 55.554 55.054 56.054 3.2055 0 0 0 0.38417 1 11726 11726 0.094841 0.094841 1 35766 14478 22824 22835 40974 40974 0.26606153952548084 RKAKILKIRAL 11 Unmodified _RKAKILKIRAL_ 0 0 0 L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|59|2|sense L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|59|2|sense L1PA5_dup4726|chr6:121267153-121273267:+|1.8316246263379272|0.044413508785138|5.37|151.0|59|2|sense MSMS UPN47_class_I_Rep_3 4 437.3103942871094 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 62.526 1 65.695 65.195 66.195 3.1698 0 0 0 0.38417 1 14830 14830 0.094841 0.094841 1 35767 14478 22824 22835 40975 40975 0.26606153952548084 RKAKTIPV 8 Unmodified _RKAKTIPV_ 0 0 0 nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 MSMS UPN48_class_I_Rep_2 6 456.80291748046875 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 41.639 1 45.389 44.889 45.889 3.7508 0 0 0 0.40472 1 7624 7624 4.3292 1.7518 1 35768 4180 22825 22836 40976 40976 0.1323036078504174 RKAKTIPV 8 Unmodified _RKAKTIPV_ 0 0 0 nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 MSMS UPN48_class_I_Rep_3 7 456.8023986816406 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 40.67 1 44.321 43.821 44.821 3.6509 0 0 0 0.40472 1 7261 7261 4.3292 0.38484 1 35769 4180 22825 22836 40977 40977 0.1323036078504174 RKAKTIPV 8 Unmodified _RKAKTIPV_ 0 0 0 nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 MSMS UPN48_class_I_Rep_3 7 456.8028564453125 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 47.704 1 51.338 50.838 51.838 3.6339 0 0 0 0.40659 1 9388 9388 1.8442 1.0506 1 35770 4180 22825 22836 40978 40978 0.1323036078504174 RKALIKNL 8 Unmodified _RKALIKNL_ 0 0 0 REV__L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|78|2|sense;REV__L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|138|3|sense;REV__L1PA2_dup4444|chr15:92136973-92140869:-|1.1762635312578065|0.0731728251851758|4.01|151.0|51|2|sense REV__L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|138|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.3238525390625 2 478.324194 954.633835 -0.36378 -0.000174 -0.12971 -6.2045E-05 -0.49349 -0.00023605 478.32416065195093 19.396 1.0571 23.008 22.571 23.628 3.6118 191 122 2 0 0 0 0.82752 1 1700 1700 2.3027 0 1 73254 + 35771 29550;29486;29499 22826 22837 40979 40979 0.15470336193402545 RKAPKSIIFHL 11 Unmodified _RKAPKSIIFHL_ 0 0 0 L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|44|3|sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|44|3|sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|44|3|sense MSMS UPN48_class_I_Rep_2 6 437.2674865722656 3 437.274952 1308.80303 NaN NaN NaN NaN NaN NaN NaN 49.325 1 53.043 52.543 53.543 3.7175 0 0 0 0.38417 1 9954 9954 2.8433 0.21205 1 35772 11058 22827 22838 40980 40980 0.16097612756107083 RKAPKSIIFHL 11 Unmodified _RKAPKSIIFHL_ 0 0 0 L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|44|3|sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|44|3|sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|44|3|sense MSMS UPN48_class_I_Rep_3 7 437.2676086425781 3 437.274952 1308.80303 NaN NaN NaN NaN NaN NaN NaN 48.856 1 52.485 51.985 52.985 3.6291 0 0 0 0.38417 1 9746 9746 5.0475 1.2016 1 35773 11058 22827 22838 40981 40981 0.16097612756107083 RKAQDLVA 8 Unmodified _RKAQDLVA_ 0 0 0 L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|4|1|sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|4|1|sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.7663269042969 2 450.766709 899.518865 -0.5496 -0.00024774 0.028041 1.264E-05 -0.52156 -0.0002351 450.7665522025698 28.107 0.87535 31.606 31.296 32.172 3.4986 153 73 3 0 0 0 0.82752 1 4380 4380 11.64 0 1 202630 35774 10121 22828 22839 40982 40982 0.06508606991610577 RKARKITD 8 Unmodified _RKARKITD_ 0 0 0 REV__L1MB3_dup498|chr1:55117771-55119589:+|3.330119463095452|0.199129222332398|4.06|151.0|5|1|sense REV__L1MB3_dup498|chr1:55117771-55119589:+|3.330119463095452|0.199129222332398|4.06|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 494.307861328125 2 494.306532 986.598512 NaN NaN NaN NaN NaN NaN NaN 51.132 1 54.47 53.97 54.97 3.3386 0 0 0 0.40643 1 11300 11300 2.0598 0 1 + 35775 25894 22829 22840 40983 40983 0.10467673665607435 RKASKYKRAS 10 Unmodified _RKASKYKRAS_ 0 0 0 REV__L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|28|3|sense REV__L1MD3_dup921|chr3:48081571-48082524:+|1.9042252796437404|0.0138175409862436|7.11|151.0|28|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.856689453125 2 597.856921 1193.69929 0.48266 0.00028856 -0.63304 -0.00037847 -0.15038 -8.9904E-05 597.856207419792 83.386 0.26195 87.067 87.028 87.29 3.6814 49 30 2 0 0 0 0.56374 1 19855 19855 1.1933 0.66858 1 112810 + 35776 27491 22830 22841 40984 40984 0.11018705648461946 RKATNPKLV 9 Unmodified _RKATNPKLV_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|66|2|sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|66|2|sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|66|2|sense MSMS UPN47_class_I_Rep_3 4 513.807861328125 2 513.824558 1025.63456 NaN NaN NaN NaN NaN NaN NaN 46.036 1 49.28 48.78 49.78 3.2441 0 0 0 0.39598 1 9811 9811 1.6526 0 1 35777 9638 22831 22842 40985 40985 0.12277130842448969 RKCLPVAMK 9 Unmodified _RKCLPVAMK_ 0 0 0 REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|64|2|anti-sense REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|64|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.303466796875 2 523.30409 1044.59363 0.099693 5.217E-05 -1.1232 -0.00058779 -1.0235 -0.00053562 523.3033544684225 81.16 0.37675 84.544 84.49 84.867 3.3839 64 45 2 0 0 0 0.48846 1 20217 20217 1.8442 0 1 138880 + 35778 30885 22832 22843 40986 40986 0.07311330206994171 RKCLPVAMK 9 Unmodified _RKCLPVAMK_ 0 0 0 REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|64|2|anti-sense REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|64|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 523.30409 1044.59363 0.36387 0.00019041 -2.5666 -0.0013431 -2.2027 -0.0011527 523.3024469145671 81.508 0.12561 84.831 84.779 84.905 3.3231 0.19484 -0.0015215 NaN 1.8442 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 63502 + 35779 30885 22832 22843 0.07311330206994171 RKCLPVAMK 9 Unmodified _RKCLPVAMK_ 0 0 0 REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|64|2|anti-sense REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|64|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 523.30409 1044.59363 0.37985 0.00019878 -0.94795 -0.00049606 -0.5681 -0.00029729 523.3032394041404 80.915 0.18998 84.572 84.453 84.643 3.6567 -0.064001 0.00017258 NaN 1.8442 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 128420 + 35780 30885 22832 22843 0.07311330206994171 RKCNGPALFI 10 Unmodified _RKCNGPALFI_ 0 0 0 L1M3_dup4142|chrY:13389031-13390671:-|1.6149649108498996|0.0521469287471801|4.95|84.0|102|3|anti-sense L1M3_dup4142|chrY:13389031-13390671:-|1.6149649108498996|0.0521469287471801|4.95|84.0|102|3|anti-sense L1M3_dup4142|chrY:13389031-13390671:-|1.6149649108498996|0.0521469287471801|4.95|84.0|102|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 560.3242797851562 2 559.810593 1117.60663 0.39008 0.00021837 2.2287 0.0012476 2.6187 0.001466 559.8129165354424 63.241 0.080803 66.601 66.574 66.655 3.3595 6 5 2 0 0 0 0.84575 1 14945 14945 3.9444 1.3669 1 32162 35781 8766 22833 22844 40987 40987 0.05253484590707558 RKDGVFLY 8 Unmodified _RKDGVFLY_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_1 2 499.2768859863281 2 499.276909 996.539266 -0.23742 -0.00011854 -0.056821 -2.8369E-05 -0.29424 -0.00014691 499.27686223680183 38.901 0.7891 42.566 42.278 43.068 3.6652 71 48 2 0 0 0 0.82752 1 7557 7557 9.3831 0 1 86369 35782 2511 22834 22845 40988 40988 0.040857776514030775 RKDGVFLY 8 Unmodified _RKDGVFLY_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MSMS UPN47_class_I_Rep_2 3 499.27679443359375 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 39.426 1 42.804 42.304 43.304 3.3785 0 0 0 0.40292 1 7742 7742 6.7232 0.36906 1 35783 2511 22834 22845 40989 40989 0.040857776514030775 RKDIRIGL 8 Unmodified _RKDIRIGL_ 0 0 0 ENST00000569069.1_1_15:75658861-75660070:-|nuORF ENST00000569069.1_1_15:75658861-75660070:-|nuORF ENST00000569069.1_1_15:75658861-75660070:-|nuORF MSMS UPN47_class_I_Rep_1 2 485.81146240234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.306 1 71.671 71.171 72.171 3.3646 0 0 0 0.40738 1 16481 16481 0.79363 0 1 35784 7505 22835 22846 40990 40990 0.12232861670975126 RKDLELYI 8 Unmodified _RKDLELYI_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MSMS UPN47_class_I_Rep_1 2 525.3027954101562 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 113.88 1 117.46 116.96 117.96 3.572 0 0 0 0.40738 1 28121 28121 0.79363 0 1 35785 5230 22836 22847 40991 40991 0.06934315994340068 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 405.22271728515625 3 405.222693 1212.64625 -0.7336 -0.00029727 -0.8885 -0.00036004 -1.6221 -0.00065731 405.2224625480214 47.506 0.83852 50.855 50.209 51.048 3.3492 175 64 4 0 0 0 0.52578 1 10240 10240 3.5927 0.0056165 1 461230 35786 7039 22837 22848 40992 40992 0.04843283075160798 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 405.2225036621094 3 405.222693 1212.64625 -0.71594 -0.00029011 0.12515 5.0713E-05 -0.59079 -0.0002394 405.5569227528488 47.691 0.22589 51.04 50.985 51.211 3.3492 36 27 2 0 0 0 0.52578 1 10270 10270 3.5927 0.0056165 1 501860 35787 7039 22837 22848 40993 40993 0.04843283075160798 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 405.2231750488281 3 405.222693 1212.64625 -0.70203 -0.00028448 -0.68013 -0.00027561 -1.3822 -0.00056008 405.22239376615266 47.903 0.88953 51.252 51.127 52.016 3.3492 79 53 2 0 0 0 0.52578 1 10305 10305 3.5927 0.0056165 1 246010 35788 7039 22837 22848 40994 40994 0.04843283075160798 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 405.5565490722656 3 405.222693 1212.64625 -0.76501 -0.00031 -0.36465 -0.00014776 -1.1297 -0.00045776 405.22258730993633 47.601 0.7495 50.841 50.215 50.964 3.2405 129 57 3 0 0 0 0.37961 1 10314 10314 5.8681 2.0222 1 417900 35789 7039 22837 22848 40995 40995 0.04843283075160798 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 405.5567932128906 3 405.222693 1212.64625 -0.74127 -0.00030038 -0.55685 -0.00022565 -1.2981 -0.00052603 405.2225068940285 47.763 0.93592 51.003 50.95 51.886 3.2405 121 67 3 0 0 0 0.37961 2 10330 10330;10382 5.8681 2.2811 1 396850 35790 7039 22837 22848 40996;40997 40996 0.04843283075160798 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 405.222693 1212.64625 -0.24352 -9.8679E-05 -0.24619 -9.976E-05 -0.4897 -0.00019844 405.55683348753496 47.41 0.055969 51.105 51.068 51.124 3.6951 0.17115 0.00044009 NaN 5.8681 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 223930 35791 7039 22837 22848 0.04843283075160798 RKDSDQVGPVL 11 Unmodified _RKDSDQVGPVL_ 0 0 0 ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 405.222693 1212.64625 -0.71594 -0.00029011 0.12515 5.0713E-05 -0.59079 -0.0002394 405.5569227528488 47.691 0.22589 51.04 50.985 51.211 3.3492 0.018574 0.00057773 NaN 5.8681 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 501860 35792 7039 22837 22848 0.04843283075160798 RKDSGYYSL 9 Unmodified _RKDSGYYSL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 544.7713012695312 2 544.772188 1087.52982 -0.36068 -0.00019649 0.30379 0.0001655 -0.056888 -3.0991E-05 544.7722484935242 19.352 1.5663 22.704 22.082 23.648 3.3514 332 154 3 0 0 0 0.48643 1 1999 1999 2.0598 0 1 229260 35793 3707 22838 22849 40998 40998 -0.0104403542475211 RKDSKEVDYQ 10 Unmodified _RKDSKEVDYQ_ 0 0 0 REV__L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|145|2|anti-sense REV__L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|145|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 634.316650390625 2 634.317491 1266.62043 -0.0022218 -1.4093E-06 0.13088 8.3019E-05 0.12866 8.161E-05 634.3175421587289 29.236 0.78226 32.993 32.684 33.467 3.7578 152 61 3 0 0 0 0.56374 1 4729 4729 1.1933 0.23107 1 393980 + 35794 26624 22839 22850 40999 40999 -0.0022161116712595685 RKDVQELY 8 Unmodified _RKDVQELY_ 0 0 0 L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|168|3|sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|168|3|sense L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|168|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 525.7830200195312 2 525.782556 1049.55056 -0.2361 -0.00012414 0.35892 0.00018871 0.12282 6.4575E-05 525.7825930316677 42.772 0.81332 46.133 45.686 46.499 3.3611 102 55 3 0 0 0 0.82752 1 8852 8852 11.64 0 1 187330 35795 12237 22840 22851 41000 41000 0.027765549549030766 RKDYHIEE 8 Unmodified _RKDYHIEE_ 0 0 0 nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882.15,HAAO,chr2,-,I6.1,42767929,42769710|33|6.8|1|intron;ENSG00000162882|ENST00000294973|HAAO;ENST00000402268.1_1_2:43010452-43019676:-|nuORF nc|ENSG00000162882|P46952-2|HAAO nc|ENSG00000162882|P46952-2|HAAO MSMS UPN47_class_I_Rep_2 3 545.270263671875 2 545.269813 1088.52507 NaN NaN NaN NaN NaN NaN NaN 30.616 1 34.098 33.598 34.598 3.4821 0 0 0 0.40625 1 5071 5071 2.3027 0 1 35796 3970 22841 22852 41001 41001 -0.015649195675223382 RKEFWYRRIRL 11 Unmodified _RKEFWYRRIRL_ 0 0 0 REV__HSMAR2_dup972|chr9:77962916-77964123:+|1.9298430375949964|0.0132024450745926|7.19|151.0|28|3|sense REV__HSMAR2_dup972|chr9:77962916-77964123:+|1.9298430375949964|0.0132024450745926|7.19|151.0|28|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 405.88409423828125 4 406.490214 1621.93175 0.11371 4.6222E-05 0.11771 4.785E-05 0.23142 9.4072E-05 406.74084020831947 65.006 0.09478 68.486 68.418 68.513 3.4792 6 5 2 0 0 0 22.551 1 14725 14725 0.094841 0 1 39296 + 35797 23967 22842 22853 41002 41002 0.14565967719045148 RKEFWYRRIRL 11 Unmodified _RKEFWYRRIRL_ 0 0 0 REV__HSMAR2_dup972|chr9:77962916-77964123:+|1.9298430375949964|0.0132024450745926|7.19|151.0|28|3|sense REV__HSMAR2_dup972|chr9:77962916-77964123:+|1.9298430375949964|0.0132024450745926|7.19|151.0|28|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 4 406.490214 1621.93175 0.13083 5.3183E-05 0.85312 0.00034678 0.98395 0.00039997 406.49055022208717 65.253 0.053238 68.761 68.727 68.78 3.5077 0.13752 0.00029001 NaN 0.094841 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 26000 + 35798 23967 22842 22853 0.14565967719045148 RKEKYLTF 8 Unmodified _RKEKYLTF_ 0 0 0 L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|81|3|sense L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|81|3|sense L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|81|3|sense MSMS UPN47_class_I_Rep_2 3 543.2813110351562 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 49.382 1 52.728 52.228 53.228 3.3465 0 0 0 0.40604 1 10761 10761 2.5775 0 1 35799 12702 22843 22854 41003 41003 0.06922022231265146 RKEMKRWL 8 Unmodified _RKEMKRWL_ 0 0 0 REV__L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|6|1|sense REV__L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 573.27734375 2 573.83186 1145.64917 -0.12632 -7.2489E-05 3.623 0.002079 3.4967 0.0020065 574.3373804803551 17.996 0.022011 21.546 21.534 21.556 3.5504 4 2 2 0 0 0 0.72333 1 1430 1430 0.6015 0 1 7409.6 + 35800 25772 22844 22855 41004 41004 0.08216879718975179 RKEVEDLIKSF 11 Unmodified _RKEVEDLIKSF_ 0 0 0 REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D MSMS UPN48_class_I_Rep_1 5 455.25714111328125 3 455.257515 1362.75072 NaN NaN NaN NaN NaN NaN NaN 53.731 1 57.245 56.745 57.745 3.5143 0 0 0 0.38417 1 11307 11307 4.1166 0 1 + 35801 19942 22845 22856 41005 41005 0.08384984831855036 RKFDALSFL 9 Unmodified _RKFDALSFL_ 0 0 0 REV__L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|116|3|anti-sense REV__L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|116|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.3131713867188 2 548.811116 1095.60768 0.46533 0.00025538 -0.44107 -0.00024206 0.024259 1.3314E-05 548.8106394929927 64.967 0.72571 68.475 68.175 68.901 3.5077 99 53 3 0 0 0 0.36392 1 14615 14615 10.074 0 1 141460 + 35802 28765 22846 22857 41006 41006 0.06370022231271832 RKFEKRWK 8 Unmodified _RKFEKRWK_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|69|2|sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|69|2|sense MSMS UPN48_class_I_Rep_2 6 589.3519897460938 2 589.351274 1176.688 NaN NaN NaN NaN NaN NaN NaN 89.957 1 93.704 93.204 94.204 3.7471 0 0 0 0.40746 1 21444 21444 0.69038 0 1 + 35803 28951 22847 22858 41007 41007 0.1067192834495927 RKFFHLWRRI 10 Unmodified _RKFFHLWRRI_ 0 0 0 ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF ENST00000370008.3_1_1:109351697-109351763:+|nuORF MSMS UPN47_class_I_Rep_1 2 486.9593200683594 3 486.957957 1457.85204 NaN NaN NaN NaN NaN NaN NaN 94.937 1 98.687 98.187 99.187 3.7508 0 0 0 0.53105 1 23575 23575 0.15932 0.064481 1 35804 6378 22848 22859 41008 41008 0.14142945835715182 RKFFKTSRK 9 Unmodified _RKFFKTSRK_ 0 0 0 L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|51|3|sense L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|51|3|sense L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|51|3|sense MSMS UPN47_class_I_Rep_3 4 599.3638916015625 2 599.364382 1196.71421 NaN NaN NaN NaN NaN NaN NaN 72.439 1 75.666 75.166 76.166 3.2271 0 0 0 0.4007 1 17832 17832 0.52476 0 1 35805 9566 22849 22860 41009 41009 0.12372197516447159 RKFFQELIL 9 Unmodified _RKFFQELIL_ 0 0 0 ENSG00000119778.15,ATAD2B,chr2,-,I19.1,23823570,23827797|28|5.83|6|intron;ENSG00000119778.15,ATAD2B,chr2,-,I19.1,23823570,23827797|28|5.83|2|intron;nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B ENSG00000119778.15,ATAD2B,chr2,-,I19.1,23823570,23827797|28|5.83|6|intron ENSG00000119778.15,ATAD2B,chr2,-,I19.1,23823570,23827797|28|5.83|6|intron MSMS UPN46_class_I_Rep_3 1 597.357666015625 2 597.355691 1192.69683 NaN NaN NaN NaN NaN NaN NaN 92.118 1 92.118 91.618 92.618 0 0 0 0 0.4007 1 22279 22279 0.52476 0 1 35806 2297 22850 22861 41010 41010 0.10818857190815834 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.8087463378906 2 504.808711 1007.60287 0.31428 0.00015865 0.33317 0.00016819 0.64746 0.00032684 504.8088063076119 108.96 0.8251 108.96 108.81 109.64 0 188 57 5 0 0 0 0.82752 1 26739 26739 8.5933 8.5933 1 96096000 + 35807 31086 22851 22862 41011 41011 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.8089904785156 2 504.808711 1007.60287 0.31431 0.00015867 0.26465 0.0001336 0.57896 0.00029226 504.80881684497575 109.7 0.50902 109.7 109.62 110.13 0 144 41 4 0 0 0 0.82752 1 26977 26977 4.756 4.756 1 12140000 + 35808 31086 22851 22862 41012 41012 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.80902099609375 2 504.808711 1007.60287 0.31427 0.00015865 0.28447 0.0001436 0.59874 0.00030225 504.80879978153575 110.19 0.25475 110.19 110.11 110.37 0 61 23 4 0 0 0 0.82752 1 27145 27145 8.5933 8.5933 1 2709100 + 35809 31086 22851 22862 41013 41013 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 504.8092346191406 2 504.808711 1007.60287 0.32665 0.00016489 0.36885 0.0001862 0.69549 0.00035109 504.80885402463167 108.75 0.5749 112.39 112.21 112.78 3.6355 171 49 5 0 0 0 0.82752 2 26696 26696;26802 12.532 12.532 1 291140000 + 35810 31086 22851 22862 41014;41015 41014 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 504.8089599609375 2 504.808711 1007.60287 0.32658 0.00016486 0.12835 6.4791E-05 0.45492 0.00022965 504.808716815916 109.28 1.2833 112.88 112.76 114.04 3.6046 441 174 4 0 0 0 0.82752 4 26974 26974;27016;27050;27177 4.756 4.756 1 10111000 + 35811 31086 22851 22862 41016;41017;41018;41019 41016 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 504.8091735839844 2 504.808711 1007.60287 0.37109 0.00018733 0.20018 0.00010105 0.57127 0.00028838 504.80874647490555 109.33 0.95805 112.86 112.69 113.65 3.5307 358 133 4 0 0 0 0.82752 2 26678 26642;26678 8.5933 4.756 1 23643000 + 35812 31086 22851 22862 41020;41021 41021 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 504.8103332519531 2 504.808711 1007.60287 0.30883 0.0001559 0.37558 0.0001896 0.68441 0.0003455 504.8088317349225 108.76 0.5899 112.29 112.12 112.71 3.5382 264 66 5 0 0 0 0.82752 3 26599 26599;26682;26732 12.532 12.532 1 260200000 + 35813 31086 22851 22862 41022;41023;41024 41022 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 504.80902099609375 2 504.808711 1007.60287 0.3086 0.00015578 0.25756 0.00013002 0.56616 0.0002858 504.8087601813029 109.28 0.30704 112.81 112.68 112.99 3.5347 125 41 4 0 0 0 0.82752 1 26873 26873 4.756 4.756 1 15058000 + 35814 31086 22851 22862 41025 41025 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 504.8089294433594 2 504.808711 1007.60287 0.30871 0.00015584 0.24657 0.00012447 0.55528 0.00028031 504.8087235446194 109.5 0.83273 113.03 112.98 113.82 3.5347 255 120 3 0 0 0 0.82752 1 26940 26940 4.756 4.756 1 4769800 + 35815 31086 22851 22862 41026 41026 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 504.80889892578125 2 504.808711 1007.60287 0.26821 0.00013539 0.46149 0.00023296 0.72969 0.00036836 504.8088733961351 108.75 0.50716 112.42 112.24 112.75 3.6751 135 56 4 0 0 0 0.82752 1 25768 25768 8.5933 8.5933 1 189100000 + 35816 31086 22851 22862 41027 41027 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 504.808711 1007.60287 0.37096 0.00018726 0.41321 0.00020859 0.78417 0.00039586 504.8088433331546 108.77 0.60013 112.31 112.11 112.72 3.5333 -0.036209 -3.4757E-06 NaN 8.5933 272 69 5 NaN NaN NaN NaN 0 NaN NaN 0 237180000 + 35817 31086 22851 22862 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 504.808711 1007.60287 0.20708 0.00010454 0.12347 6.2327E-05 0.33055 0.00016686 504.8087575358414 109.26 0.46848 112.89 112.75 113.21 3.6321 -0.03338 -2.4745E-05 NaN 8.5933 163 58 4 NaN NaN NaN NaN 0 NaN NaN 0 6416700 + 35818 31086 22851 22862 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 504.808711 1007.60287 0.20702 0.0001045 0.43333 0.00021875 0.64034 0.00032325 504.8088507785563 108.75 0.55145 112.38 112.2 112.75 3.6321 0.036241 1.6829E-05 NaN 8.5933 266 64 5 NaN NaN NaN NaN 0 NaN NaN 0 162700000 + 35819 31086 22851 22862 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 504.808711 1007.60287 0.30397 0.00015345 0.058387 2.9474E-05 0.36236 0.00018292 504.8086560627973 109.25 0.81441 112.92 112.8 113.62 3.6715 0.001583 -9.0451E-05 NaN 8.5933 283 107 3 NaN NaN NaN NaN 0 NaN NaN 0 6411500 + 35820 31086 22851 22862 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 504.808711 1007.60287 0.30393 0.00015342 1.181 0.00059618 1.4849 0.0007496 504.8092641598374 108.6 0.061485 112.27 112.23 112.29 3.6746 -0.074198 0.00077169 NaN 8.5933 8 2 4 NaN NaN NaN NaN 0 NaN NaN 0 11790000 + 35821 31086 22851 22862 0.09937182879173179 RKFGRVFV 8 Unmodified _RKFGRVFV_ 0 0 0 REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense REV__MER11A_dup391|chr6:110742100-110743147:+|1.5616500151654864|0.0095113034616231|7.36|151.0|50|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 504.808711 1007.60287 0.26817 0.00013537 0.12513 6.3167E-05 0.3933 0.00019854 504.8087107699089 109.27 1.0933 112.94 112.8 113.89 3.6751 0.020568 -2.3065E-05 NaN 8.5933 337 152 3 NaN NaN NaN NaN 0 NaN NaN 0 8397000 + 35822 31086 22851 22862 0.09937182879173179 RKFGYKGKL 9 Unmodified _RKFGYKGKL_ 0 0 0 REV__ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron REV__ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 549.3372192382812 2 548.834926 1095.6553 0.49628 0.00027237 0.46995 0.00025792 0.96622 0.0005303 548.834948049885 109.52 0.6478 113.05 112.99 113.64 3.5347 159 92 3 0 0 0 0.12034 1 26956 26956 7.2892 0 1 2259800 + 35823 18204 22852 22863 41028 41028 0.11129721222141598 RKFHETLRS 9 Unmodified _RKFHETLRS_ 0 0 0 ENST00000420433.5_1_4:57547633-57547810:-|nuORF ENST00000420433.5_1_4:57547633-57547810:-|nuORF ENST00000420433.5_1_4:57547633-57547810:-|nuORF MSMS UPN47_class_I_Rep_2 3 587.326904296875 2 587.327996 1172.64144 NaN NaN NaN NaN NaN NaN NaN 58.608 1 61.89 61.39 62.39 3.2818 0 0 0 0.39598 1 13580 13580 1.6526 0.17072 1 35824 6678 22853 22864 41029 41029 0.06202443723032047 RKFIQRDK 8 Unmodified _RKFIQRDK_ 0 0 0 L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|108|3|sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|108|3|sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|108|3|sense MSMS UPN47_class_I_Rep_3 4 545.8284912109375 2 545.827632 1089.64071 NaN NaN NaN NaN NaN NaN NaN 54.872 1 58.057 57.557 58.557 3.1856 0 0 0 0.40625 1 12494 12494 2.3027 0 1 35825 10127 22854 22865 41030 41030 0.09947649074001674 RKFKGREEF 9 Unmodified _RKFKGREEF_ 0 0 0 nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-2|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178 nc|ENSG00000166960|Q5BJE1-3|CCDC178 nc|ENSG00000166960|Q5BJE1-3|CCDC178 MSMS UPN48_class_I_Rep_1 5 598.830810546875 2 598.830372 1195.64619 NaN NaN NaN NaN NaN NaN NaN 70.835 1 74.295 73.795 74.795 3.4598 0 0 0 0.39518 1 16528 16528 1.8442 0.88196 1 35826 4280 22855 22866 41031 41031 0.05619327865792911 RKFKKNYL 8 Unmodified _RKFKKNYL_ 0 0 0 HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|53|3|sense HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|53|3|sense HAL1_dup9653|chr6:156864495-156866026:-|1.7493365833949008|0.0268464453505777|6.03|151.0|53|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8348388671875 2 548.834926 1095.6553 -0.039339 -2.159E-05 0.090662 4.9758E-05 0.051323 2.8168E-05 548.8348089349009 22.156 0.065363 22.156 22.144 22.209 0 10 6 2 0 0 0 0.82752 1 2593 2593 0.69038 0 1 127130 35827 7922 22856 22867 41032 41032 0.11129721222141598 RKFKNRRD 8 Unmodified _RKFKNRRD_ 0 0 0 REV__L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|61|3|sense REV__L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|61|3|sense MSMS UPN47_class_I_Rep_1 2 560.3275146484375 2 560.328331 1118.64211 NaN NaN NaN NaN NaN NaN NaN 54.81 1 58.312 57.812 58.812 3.5014 0 0 0 0.40746 1 12392 12392 0.69038 0 1 + 35828 25578 22857 22868 41033 41033 0.08753283162741354 RKFLACKQI 9 Unmodified _RKFLACKQI_ 0 0 0 REV__L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|13|1|sense REV__L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 553.8299560546875 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 79.345 1 82.88 82.38 83.38 3.5352 0 0 0 0.39518 1 18937 18937 1.8442 0.19162 1 + 35829 26227 22858 22869 41034 41034 0.09442361487435846 RKFLACKQI 9 Unmodified _RKFLACKQI_ 0 0 0 REV__L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|13|1|sense REV__L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|13|1|sense MSMS UPN48_class_I_Rep_3 7 553.8316040039062 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 81.872 1 85.557 85.057 86.057 3.685 0 0 0 0.38639 1 19396 19396 3.9444 1.3669 1 + 35830 26227 22858 22869 41035 41035 0.09442361487435846 RKFLACKQI 9 Unmodified _RKFLACKQI_ 0 0 0 REV__L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|13|1|sense REV__L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|13|1|sense MSMS UPN48_class_I_Rep_3 7 553.8297119140625 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 82.057 1 85.743 85.243 86.243 3.685 0 0 0 0.38639 1 19439 19439 3.9444 0 1 + 35831 26227 22858 22869 41036 41036 0.09442361487435846 RKFLLRTY 8 Unmodified _RKFLLRTY_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|14|1|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|14|1|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|14|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8345336914062 2 548.834926 1095.6553 0.093814 5.1488E-05 0.04335 2.3792E-05 0.13716 7.528E-05 548.8348214942189 28.206 0.1314 28.206 28.111 28.242 0 13 9 2 0 0 0 0.82752 1 4306 4306 0.69038 0 1 87763 35832 12761 22859 22870 41037 41037 0.11129721222164335 RKFNQFNTNQ 10 Unmodified _RKFNQFNTNQ_ 0 0 0 L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|34|2|sense L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|34|2|sense L1ME3Cz_dup7909|chr10:100158250-100160664:+|4.642990938116135|0.418510602149868|3.47|151.0|34|2|sense MSMS UPN47_class_I_Rep_1 2 432.8851623535156 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 109.33 1 112.94 112.44 113.44 3.6046 0 0 0 0.53105 1 26962 26962 1.7423 1.0446 1 35833 12784 22860 22871 41038 41038 0.0010893450948969985 RKFPVYVL 8 Unmodified _RKFPVYVL_ 0 0 0 ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;nc|ENSG00000165269|O14520-2|AQP7;ENSG00000165269|ENST00000297988|AQP7 ENST00000412626.2_1_9:67272267-67281749:-|nuORF ENST00000412626.2_1_9:67272267-67281749:-|nuORF MSMS UPN47_class_I_Rep_3 4 511.3111267089844 2 511.313295 1020.61204 NaN NaN NaN NaN NaN NaN NaN 112.9 1 116.41 115.91 116.91 3.5098 0 0 0 0.40738 1 27685 27685 0.79363 0 1 35834 6636 22861 22872 41039 41039 0.10255531444840926 RKFSGIRTLH 10 Unmodified _RKFSGIRTLH_ 0 0 0 L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|32|2|sense L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|32|2|sense L1MB7_dup21737|chr20:13407080-13408312:-|1.1610306807107047|0.0858611312075636|3.76|151.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 405.5744323730469 3 405.575401 1213.70437 NaN NaN NaN NaN NaN NaN NaN 91.652 1 95.357 94.857 95.857 3.7053 0 0 0 0.53105 1 22864 22864 1.5923 0.37745 1 35835 10801 22862 22873 41040 41040 0.10607009511090837 RKFTKSFLP 9 Unmodified _RKFTKSFLP_ 0 0 0 CON__Q32PI4 CON__Q32PI4 CON__Q32PI4 MULTI-MSMS UPN46_class_I_Rep_3 1 562.3346557617188 2 562.334759 1122.65496 0.18928 0.00010644 0.2772 0.00015588 0.46648 0.00026232 562.3347288689639 30.238 0.096712 30.238 30.182 30.279 0 12 7 3 0 0 0 0.48846 1 4886 4886 1.8442 0 1 353080 + 35836 650 22863 22874 41041 41041 0.09854301502286944 RKGFLDKFI 9 Unmodified _RKGFLDKFI_ 0 0 0 REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|91|3|sense REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|91|3|sense MSMS UPN47_class_I_Rep_1 2 562.3344116210938 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.5 1 113.11 112.61 113.61 3.6046 0 0 0 0.37692 1 27017 27017 6.2058 0 1 + 35837 26594 22864 22875 41042 41042 0.09854301502286944 RKGFLDKFI 9 Unmodified _RKGFLDKFI_ 0 0 0 REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|91|3|sense REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|91|3|sense MSMS UPN48_class_I_Rep_1 5 562.3340454101562 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.38 1 113.01 112.51 113.51 3.6321 0 0 0 0.37692 1 26560 26560 6.2058 0 1 + 35838 26594 22864 22875 41043 41043 0.09854301502286944 RKGFLDKFI 9 Unmodified _RKGFLDKFI_ 0 0 0 REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|91|3|sense REV__L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|91|3|sense MSMS UPN48_class_I_Rep_1 5 562.3345336914062 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.5 1 113.13 112.63 113.63 3.6321 0 0 0 0.37692 1 26595 26595 6.2058 0 1 + 35839 26594 22864 22875 41044 41044 0.09854301502286944 RKGIHRIDK 9 Unmodified _RKGIHRIDK_ 0 0 0 HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense MSMS UPN47_class_I_Rep_3 4 561.8455200195312 2 561.846356 1121.67816 NaN NaN NaN NaN NaN NaN NaN 88.088 1 91.475 90.975 91.975 3.3873 0 0 0 0.4007 1 22088 22088 0.52476 0 1 35840 7894 22865 22876 41045 41045 0.12218740339585565 RKGISAKSQ 9 Unmodified _RKGISAKSQ_ 0 0 0 ENSG00000120278|ENST00000696526|PLEKHG1 ENSG00000120278|ENST00000696526|PLEKHG1 ENSG00000120278|ENST00000696526|PLEKHG1 MULTI-MSMS UPN48_class_I_Rep_1 5 487.7909240722656 2 487.790715 973.566878 0.17961 8.7611E-05 0.27011 0.00013176 0.44972 0.00021937 487.7907237122022 75.285 0.75566 78.785 78.691 79.447 3.4996 104 73 2 0 0 0 0.47763 1 18019 18019 2.9952 0.41776 1 191740 35841 2317 22866 22877 41046 41046 0.07903680911658739 RKGITQQL 8 Unmodified _RKGITQQL_ 0 0 0 MLT1F2_dup3234|chr9:133146542-133147078:+|1.0447999782681603|0.0850466502975789|3.62|151.0|31|3|anti-sense MLT1F2_dup3234|chr9:133146542-133147078:+|1.0447999782681603|0.0850466502975789|3.62|151.0|31|3|anti-sense MLT1F2_dup3234|chr9:133146542-133147078:+|1.0447999782681603|0.0850466502975789|3.62|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_1 5 472.2878112792969 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 110.56 1 114.19 113.69 114.69 3.6326 0 0 0 0.40746 1 26837 26837 0.69038 0 1 35842 16397 22867 22878 41047 41047 0.08748582400005489 RKGKKKKL 8 Unmodified _RKGKKKKL_ 0 0 0 REV__L1ME1_dup20551|chr10:133403383-133404121:-|3.61165078718174|0.2327891026571272|3.96|151.0|9|2|sense REV__L1ME1_dup20551|chr10:133403383-133404121:-|3.61165078718174|0.2327891026571272|3.96|151.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.353271484375 2 493.353286 984.692019 0.30346 0.00014971 -0.10955 -5.4046E-05 0.19391 9.5667E-05 493.35306480642936 109.58 0.13962 109.58 109.53 109.67 0 19 11 2 0 0 0 0.82752 1 26929 26929 0.79363 0 1 1314700 + 35843 27662 22868 22879 41048 41048 0.1990601783868442 RKGKKKKL 8 Unmodified _RKGKKKKL_ 0 0 0 REV__L1ME1_dup20551|chr10:133403383-133404121:-|3.61165078718174|0.2327891026571272|3.96|151.0|9|2|sense REV__L1ME1_dup20551|chr10:133403383-133404121:-|3.61165078718174|0.2327891026571272|3.96|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 493.353271484375 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 108.48 1 108.48 107.98 108.98 0 0 0 0 0.40738 1 26531 26531 0.79363 0 1 + 35844 27662 22868 22879 41049 41049 0.1990601783868442 RKGKLNNRF 9 Unmodified _RKGKLNNRF_ 0 0 0 REV__ENSG00000120725.13,SIL1,chr5,-,I19.1,139021293,139026800|29|5.59|1|intron REV__ENSG00000120725.13,SIL1,chr5,-,I19.1,139021293,139026800|29|5.59|1|intron MSMS UPN46_class_I_Rep_3 1 566.8385620117188 2 566.838531 1131.66251 NaN NaN NaN NaN NaN NaN NaN 94.933 1 94.933 94.433 95.433 0 0 0 0 0.4007 1 23036 23036 0.52476 0 1 + 35845 18709 22869 22880 41050 41050 0.1019445382255526 RKGKPHRS 8 Unmodified _RKGKPHRS_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MSMS UPN46_class_I_Rep_3 1 483.290771484375 2 483.291217 964.567881 NaN NaN NaN NaN NaN NaN NaN 28.936 1 28.936 28.436 29.436 0 0 0 0 0.40604 1 4515 4515 2.5775 0 1 35846 4738 22870 22881 41051 41051 0.08417940071217345 RKGKRWKVKIH 11 Unmodified _RKGKRWKVKIH_ 0 0 0 REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 478.6982116699219 3 479.308878 1434.90481 -0.080759 -3.8708E-05 0.85468 0.00040966 0.77392 0.00037095 479.3093114550052 46.279 0.10568 49.523 49.489 49.594 3.2439 8 5 2 0 0 0 22.551 1 9901 9901 0.094841 0 1 40739 + 35847 21777 22871 22882 41052 41052 0.20474903898525554 RKGKRWKVKIH 11 Unmodified _RKGKRWKVKIH_ 0 0 0 REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.30865478515625 3 479.308878 1434.90481 0.16869 8.0855E-05 0.20115 9.6412E-05 0.36984 0.00017727 479.3089583730199 41.975 0.72598 45.733 45.326 46.052 3.7579 123 75 2 0 0 0 0.68491 1 7738 7738 0.08335 0.08335 1 268110 + 35848 21777 22871 22882 41053 41053 0.20474903898525554 RKGKRWKVKIH 11 Unmodified _RKGKRWKVKIH_ 0 0 0 REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 479.308878 1434.90481 0.14068 6.7427E-05 -0.29683 -0.00014227 -0.15616 -7.4847E-05 479.30866847939785 45.889 0.067993 49.526 49.489 49.557 3.6369 0.0015379 -0.0012559 NaN 0.094841 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 54730 + 35849 21777 22871 22882 0.20474903898525554 RKGNAIRP 8 Unmodified _RKGNAIRP_ 0 0 0 ENSG00000181234|ENST00000435159|TMEM132C ENSG00000181234|ENST00000435159|TMEM132C ENSG00000181234|ENST00000435159|TMEM132C MSMS UPN46_class_I_Rep_3 1 456.28057861328125 2 456.280318 910.546083 NaN NaN NaN NaN NaN NaN NaN 111.38 1 111.38 110.88 111.88 0 0 0 0 0.40746 1 27458 27458 0.69038 0 1 35850 4911 22872 22883 41054 41054 0.08723135322657072 RKGNLVITV 9 Unmodified _RKGNLVITV_ 0 0 0 REV__L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|145|3|sense REV__L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|145|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 500.3188171386719 2 500.319109 998.623664 -0.17969 -8.9902E-05 -0.12809 -6.4084E-05 -0.30778 -0.00015399 500.3190767826381 39.026 0.87314 42.404 42.112 42.985 3.3785 70 50 2 0 0 0 0.46869 1 7587 7587 3.9444 0 1 125450 + 35851 26332 22873 22884 41055 41055 0.12429728468168832 RKGRNKAIFIH 11 Unmodified _RKGRNKAIFIH_ 0 0 0 L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|31|2|sense L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|31|2|sense L1MC3_dup8833|chr11:73022122-73024589:+|3.99260493915911|0.028618826499324|7.12|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 447.2824401855469 3 447.273834 1338.79967 NaN NaN NaN NaN NaN NaN NaN 109.66 1 109.66 109.16 110.16 0 0 0 0 0.38417 1 26955 26955 2.6312 0 1 35852 11384 22874 22885 41056 41056 0.14382362702099272 RKGRNKPM 8 Unmodified _RKGRNKPM_ 0 0 0 REV__L1ME3B_dup6917|chr16:10459682-10460292:+|1.0845480949839714|0.1279604550830713|3.08|151.0|13|2|sense REV__L1ME3B_dup6917|chr16:10459682-10460292:+|1.0845480949839714|0.1279604550830713|3.08|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 493.7865295410156 2 493.787453 985.560352 NaN NaN NaN NaN NaN NaN NaN 109.6 1 109.6 109.1 110.1 0 0 0 0 0.39624 1 26934 26934 9.3474 2.0582 1 + 35853 28081 22875 22886 41057 41057 0.06699464479288508 RKGRPAWL 8 Unmodified _RKGRPAWL_ 0 0 0 AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 492.2974853515625 2 492.29851 982.582468 0.18544 9.1291E-05 -1.8203 -0.00089613 -1.6349 -0.00080484 492.2975141636018 45.011 0.08577 48.772 48.732 48.818 3.7617 6 5 2 0 0 0 0.82752 1 8638 8638 2.5775 0 1 49400 35854 209 22876 22887 41058 41058 0.09048012219352586 RKGRPAWL 8 Unmodified _RKGRPAWL_ 0 0 0 AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 492.29851 982.582468 0.25065 0.00012339 -0.11445 -5.6345E-05 0.1362 6.7049E-05 492.2990162191305 49.137 0.064259 49.137 49.085 49.149 0 0.22133 0.0016999 NaN 2.5775 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 81871 35855 209 22876 22887 0.09048012219352586 RKGRPAWL 8 Unmodified _RKGRPAWL_ 0 0 0 AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense AluSc8_dup17320|chr16:3735302-3735594:-|1.0195628739728302|0.412736474827951|1.3|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 492.29851 982.582468 0.016157 7.9541E-06 -2.357 -0.0011603 -2.3408 -0.0011524 492.2971210225908 45.593 0.090725 48.837 48.796 48.886 3.2441 -0.078399 -0.00050807 NaN 2.5775 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 25362 35856 209 22876 22887 0.09048012219352586 RKGRPIDWY 9 Unmodified _RKGRPIDWY_ 0 0 0 REV__L1PA16_dup5568|chr6:106550985-106551672:-|1.0109981826141132|0.1682526982449265|2.59|151.0|8|2|sense REV__L1PA16_dup5568|chr6:106550985-106551672:-|1.0109981826141132|0.1682526982449265|2.59|151.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 596.1534423828125 2 595.825089 1189.63563 0.33177 0.00019768 -1.2097 -0.00072076 -0.87791 -0.00052308 595.8242654124841 47.018 0.50607 50.262 50.06 50.566 3.2439 42 31 2 0 0 0 0.12477 1 10092 10092 1.6526 0.17072 1 82299 + 35857 29390 22877 22888 41059 41059 0.048393452113714375 RKGRPIDWY 9 Unmodified _RKGRPIDWY_ 0 0 0 REV__L1PA16_dup5568|chr6:106550985-106551672:-|1.0109981826141132|0.1682526982449265|2.59|151.0|8|2|sense REV__L1PA16_dup5568|chr6:106550985-106551672:-|1.0109981826141132|0.1682526982449265|2.59|151.0|8|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 595.825089 1189.63563 0.15367 9.1562E-05 -1.1598 -0.00069104 -1.0061 -0.00059947 595.8242690949338 46.594 0.38207 50.294 50.093 50.475 3.6999 0.0016787 -3.8338E-05 NaN 1.6526 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 68357 + 35858 29390 22877 22888 0.048393452113714375 RKGRPIDWY 9 Unmodified _RKGRPIDWY_ 0 0 0 REV__L1PA16_dup5568|chr6:106550985-106551672:-|1.0109981826141132|0.1682526982449265|2.59|151.0|8|2|sense REV__L1PA16_dup5568|chr6:106550985-106551672:-|1.0109981826141132|0.1682526982449265|2.59|151.0|8|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 595.825089 1189.63563 0.29649 0.00017666 -0.99535 -0.00059306 -0.69886 -0.0004164 595.8244600513331 46.969 0.29235 50.321 50.168 50.461 3.3515 0.028303 0.00015762 NaN 1.6526 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 59014 + 35859 29390 22877 22888 0.048393452113714375 RKGRRRGA 8 Unmodified _RKGRRRGA_ 0 0 0 ENST00000441074.3_1_12:6500103-6500157:+|nuORF ENST00000441074.3_1_12:6500103-6500157:+|nuORF ENST00000441074.3_1_12:6500103-6500157:+|nuORF MSMS UPN48_class_I_Rep_2 6 478.8019714355469 2 478.802283 955.590013 NaN NaN NaN NaN NaN NaN NaN 34.793 1 38.467 37.967 38.967 3.6735 0 0 0 0.40746 1 5650 5650 0.69038 0 1 35860 6776 22878 22889 41060 41060 0.11044164539646317 RKGVKQHP 8 Unmodified _RKGVKQHP_ 0 0 0 REV__L1PB1_dup8997|chr10:52512542-52513972:-|1.2749122168916966|0.0067709986965337|7.56|140.0|36|3|sense REV__L1PB1_dup8997|chr10:52512542-52513972:-|1.2749122168916966|0.0067709986965337|7.56|140.0|36|3|sense MSMS UPN47_class_I_Rep_3 4 475.287109375 2 475.288143 948.561733 NaN NaN NaN NaN NaN NaN NaN 113.02 1 116.53 116.03 117.03 3.5098 0 0 0 0.40746 1 27713 27713 0.69038 0 1 + 35861 29761 22879 22890 41061 41061 0.08539421839702754 RKGVWEVRFL 10 Unmodified _RKGVWEVRFL_ 0 0 0 HAL1_dup15569|chr11:47369586-47369860:+|1.866700953989892|0.0417546426953295|5.48|151.0|18|3|anti-sense HAL1_dup15569|chr11:47369586-47369860:+|1.866700953989892|0.0417546426953295|5.48|151.0|18|3|anti-sense HAL1_dup15569|chr11:47369586-47369860:+|1.866700953989892|0.0417546426953295|5.48|151.0|18|3|anti-sense MSMS UPN46_class_I_Rep_3 1 645.3783569335938 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 20.766 1 20.766 20.266 21.266 0 0 0 0 0.53105 1 2214 2214 0.40072 0 1 35862 7814 22880 22891 41062 41062 0.10760466687906955 RKGWGAVP 8 Unmodified _RKGWGAVP_ 0 0 0 REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|55|1|sense REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|55|1|sense MSMS UPN47_class_I_Rep_2 3 435.7516174316406 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 64.975 1 68.231 67.731 68.731 3.2556 0 0 0 0.40746 1 15514 15514 0.69038 0 1 + 35863 29736 22881 22892 41063 41063 0.047206590283281 RKGWGRFI 8 Unmodified _RKGWGRFI_ 0 0 0 LTR7_dup1145|chr7:101935024-101935434:+|1.8068007334320408|0.1098353548996188|4.04|151.0|18|1|anti-sense LTR7_dup1145|chr7:101935024-101935434:+|1.8068007334320408|0.1098353548996188|4.04|151.0|18|1|anti-sense LTR7_dup1145|chr7:101935024-101935434:+|1.8068007334320408|0.1098353548996188|4.04|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.2978210449219 2 510.29851 1018.58247 NaN NaN NaN NaN NaN NaN NaN 60.272 1 63.746 63.246 64.246 3.4737 0 0 0 0.39819 1 13317 13317 8.5933 0 1 35864 15702 22882 22893 41064 41064 0.07392012219372646 RKHAAIQQ 8 Unmodified _RKHAAIQQ_ 0 0 0 ENST00000472541.5_1_1:1235057-1244982:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3 ENST00000472541.5_1_1:1235057-1244982:-|nuORF ENST00000472541.5_1_1:1235057-1244982:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.2775573730469 2 476.277775 950.540997 -0.82694 -0.00039386 -0.039465 -1.8796E-05 -0.86641 -0.00041265 476.2777734531042 14.097 0.35111 17.467 17.341 17.692 3.3697 58 41 2 0 0 0 0.82752 1 461 461 0.69038 0 1 62109 35865 2718 22883 22894 41065 41065 0.06374831460027508 RKHAHLAI 8 Unmodified _RKHAHLAI_ 0 0 0 REV__L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|50|2|sense REV__L1PA5_dup7718|chr10:45387826-45391053:+|1.174249414881302|0.0731388535019569|4.0|151.0|50|2|sense MSMS UPN48_class_I_Rep_3 7 473.2898864746094 2 473.290685 944.566818 NaN NaN NaN NaN NaN NaN NaN 63.563 1 67.072 66.572 67.572 3.5091 0 0 0 0.40604 1 14221 14221 2.5775 0 1 + 35866 29796 22884 22895 41066 41066 0.09231725702306903 RKHDKKKQL 9 Unmodified _RKHDKKKQL_ 0 0 0 REV__L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|12|2|sense REV__L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 590.86669921875 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 96.112 1 99.892 99.392 100.39 3.7804 0 0 0 0.39518 1 22829 22829 1.8442 0.77278 1 + 35867 27652 22885 22896 41067 41067 0.13735296028130506 RKHDKKKQL 9 Unmodified _RKHDKKKQL_ 0 0 0 REV__L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|12|2|sense REV__L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 590.8670654296875 2 590.867289 1179.72002 0.51319 0.00030323 -0.037979 -2.2441E-05 0.47521 0.00028079 590.8664601020622 96.015 0.22137 99.923 99.854 100.08 3.9084 51 31 2 0 0 0 0.46434 1 22763 22763 4.3292 1.594 1 219090 + 35868 27652 22885 22896 41068 41068 0.13735296028130506 RKHGRLDLV 9 Unmodified _RKHGRLDLV_ 0 0 0 REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF MSMS UPN46_class_I_Rep_3 1 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 73.46 1 73.46 72.96 73.96 0 0 0 0 0.39428 1 17027 17027 2.0598 0 1 + 35869 20031 22886 22897 41069 41069 0.10899051448268438 RKHGRLDLV 9 Unmodified _RKHGRLDLV_ 0 0 0 REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF MSMS UPN46_class_I_Rep_3 1 547.3323974609375 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 77.779 1 77.779 77.279 78.279 0 0 0 0 0.39428 1 18192 18192 2.0598 0 1 + 35870 20031 22886 22897 41070 41070 0.10899051448268438 RKHGRLDLV 9 Unmodified _RKHGRLDLV_ 0 0 0 REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF MSMS UPN48_class_I_Rep_3 7 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 63.599 1 67.108 66.608 67.608 3.5091 0 0 0 0.39428 1 14232 14232 2.0598 0 1 + 35871 20031 22886 22897 41071 41071 0.10899051448268438 RKHILHRH 8 Unmodified _RKHILHRH_ 0 0 0 ENST00000506314.1_1_4:109097484-109097532:+|nuORF ENST00000506314.1_1_4:109097484-109097532:+|nuORF ENST00000506314.1_1_4:109097484-109097532:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 548.8345336914062 2 548.833583 1095.65261 0.015186 8.3346E-06 2.5001 0.0013722 2.5153 0.0013805 548.834860497774 24.593 0.18133 24.593 24.521 24.702 0 27 19 2 0 0 0 0.82752 1 3259 3259 0.69038 0 1 69857 35872 7156 22887 22898 41072 41072 0.10861310607856467 RKHIQRLH 8 Unmodified _RKHIQRLH_ 0 0 0 nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19 nc|ENSG00000278259|Q96H55-4|MYO19 nc|ENSG00000278259|Q96H55-4|MYO19 MSMS UPN48_class_I_Rep_1 5 544.3326416015625 2 544.333416 1086.65228 NaN NaN NaN NaN NaN NaN NaN 82.572 1 86.147 85.647 86.647 3.5753 0 0 0 0.40746 1 19722 19722 0.69038 0 1 35873 5837 22888 22899 41073 41073 0.11241890887959016 RKHKGLQN 8 Unmodified _RKHKGLQN_ 0 0 0 L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|3|1|sense L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|3|1|sense L1PA7_dup7130|chr9:3556887-3563337:-|2.009969104636597|0.3125110422985194|2.69|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 490.7914733886719 2 490.79105 979.567546 NaN NaN NaN NaN NaN NaN NaN 118.92 1 122.4 121.9 122.9 3.4793 0 0 0 0.40746 1 29113 29113 0.69038 0 1 35874 14874 22889 22900 41074 41074 0.07694520351367373 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MSMS UPN46_class_I_Rep_3 1 483.64642333984375 3 483.646776 1447.9185 NaN NaN NaN NaN NaN NaN NaN 54.04 1 54.04 53.54 54.54 0 0 0 0 0.53105 1 11672 11672 0.69767 0 1 35875 1819 22890 22901 41075 41075 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_2 3 483.9808044433594 3 483.646776 1447.9185 0.18554 8.9735E-05 -0.68276 -0.00033021 -0.49722 -0.00024048 483.98079051553395 49.519 0.31543 52.862 52.772 53.087 3.3431 29 19 2 0 0 0 0.5652 1 10810 10810 0.15932 0 1 186310 35876 1819 22890 22901 41076 41076 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_3 4 483.646484375 3 483.646776 1447.9185 -0.064203 -3.1052E-05 -0.42555 -0.00020581 -0.48975 -0.00023687 483.64656941563464 45.769 0.79062 49.013 48.503 49.293 3.2441 69 47 2 0 0 0 0.5652 1 9715 9715 0.15932 0 1 75323 35877 1819 22890 22901 41077 41077 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MSMS UPN47_class_I_Rep_3 4 483.6468811035156 3 483.646776 1447.9185 NaN NaN NaN NaN NaN NaN NaN 55.929 1 59.107 58.607 59.607 3.1779 0 0 0 0.53105 1 12820 12820 0.15932 0 1 35878 1819 22890 22901 41078 41078 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_1 5 483.646728515625 3 483.646776 1447.9185 0.12091 5.8479E-05 -0.16205 -7.8375E-05 -0.041138 -1.9896E-05 483.9810257486809 47.524 1.9144 51.046 50.484 52.399 3.5219 403 137 3 0 0 0 0.5652 2 9523 9523;9611 0.15932 0 1 2739200 35879 1819 22890 22901 41079;41080 41079 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_2 6 483.6465759277344 3 483.646776 1447.9185 0.14776 7.1466E-05 -0.15981 -7.729E-05 -0.012043 -5.8244E-06 483.6466108019162 47.533 2.6294 51.269 50.372 53.001 3.7361 550 198 3 0 0 0 0.5652 1 9516 9516 0.15932 0 1 3399500 35880 1819 22890 22901 41081 41081 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 483.646776 1447.9185 0.18554 8.9735E-05 -0.68276 -0.00033021 -0.49722 -0.00024048 483.98079051553395 49.519 0.31543 52.862 52.772 53.087 3.3431 0.022821 -0.00040917 NaN 0.15932 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 186310 35881 1819 22890 22901 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646776 1447.9185 0.14264 6.8989E-05 -0.61597 -0.00029791 -0.47333 -0.00022893 483.64645119577244 49.656 0.50043 52.882 52.56 53.06 3.2262 0.043282 -0.00031227 NaN 0.15932 33 28 2 NaN NaN NaN NaN 0 NaN NaN 0 110160 35882 1819 22890 22901 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN48_class_I_Rep_1 5 3 483.646776 1447.9185 0.1318 6.3742E-05 0.068922 3.3334E-05 0.20072 9.7076E-05 483.6468583285283 45.177 0.066277 48.693 48.651 48.717 3.5162 -0.20622 0.00070265 NaN 0.15932 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66162 35883 1819 22890 22901 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN48_class_I_Rep_1 5 3 483.646776 1447.9185 0.12547 6.0685E-05 -0.1559 -7.54E-05 -0.030426 -1.4715E-05 483.9811378672103 49.218 0.36065 52.742 52.666 53.027 3.5239 -0.097236 0.00035527 NaN 0.15932 42 25 2 NaN NaN NaN NaN 0 NaN NaN 0 244790 35884 1819 22890 22901 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 483.646776 1447.9185 0.15707 7.5964E-05 -0.42707 -0.00020655 -0.27001 -0.00013059 483.6464657502664 45.168 1.8228 48.926 48.595 50.417 3.7579 0.026133 -1.7012E-05 NaN 0.15932 434 131 5 NaN NaN NaN NaN 0 NaN NaN 0 3514800 35885 1819 22890 22901 0.21245574450313143 RKHKRRRRKQ 10 Unmodified _RKHKRRRRKQ_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 483.646776 1447.9185 0.14837 7.1759E-05 -0.3705 -0.00017919 -0.22213 -0.00010743 483.6465549437689 45.389 0.44307 49.026 48.652 49.095 3.6369 0.12599 6.5075E-05 NaN 0.15932 87 31 3 NaN NaN NaN NaN 0 NaN NaN 0 5001300 35886 1819 22890 22901 0.21245574450313143 RKHLFASI 8 Unmodified _RKHLFASI_ 0 0 0 L1MEd_dup19494|chr18:2781229-2781467:+|1.1947335693420549|0.2288046087364523|2.38|151.0|11|2|anti-sense L1MEd_dup19494|chr18:2781229-2781467:+|1.1947335693420549|0.2288046087364523|2.38|151.0|11|2|anti-sense L1MEd_dup19494|chr18:2781229-2781467:+|1.1947335693420549|0.2288046087364523|2.38|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_3 4 486.29168701171875 2 486.292894 970.571235 NaN NaN NaN NaN NaN NaN NaN 76.525 1 79.782 79.282 80.282 3.2573 0 0 0 0.40157 1 19028 19028 7.2892 0 1 35887 13195 22891 22902 41082 41082 0.08477190125222478 RKHLRRRR 8 Unmodified _RKHLRRRR_ 0 0 0 L1M2_dup7520|chr13:95740838-95742765:-|1.4713425405557454|0.080618155382505|4.19|151.0|2|1|sense L1M2_dup7520|chr13:95740838-95742765:-|1.4713425405557454|0.080618155382505|4.19|151.0|2|1|sense L1M2_dup7520|chr13:95740838-95742765:-|1.4713425405557454|0.080618155382505|4.19|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 589.3822021484375 2 589.384306 1176.75406 NaN NaN NaN NaN NaN NaN NaN 94.311 1 97.718 97.218 98.218 3.4068 0 0 0 0.40746 1 23477 23477 0.69038 0.16561 1 35888 8708 22892 22903 41083 41083 0.17275182030402902 RKHLSFIV 8 Unmodified _RKHLSFIV_ 0 0 0 MER4E1_dup505|chr9:66296118-66296627:+|1.084791176850963|0.0424718702648892|4.67|140.0|6|2|sense;MER4E1_dup497|chr9:40080025-40080534:-|1.4238882972064797|0.0360988331864191|5.3|150.0|6|2|sense MER4E1_dup505|chr9:66296118-66296627:+|1.084791176850963|0.0424718702648892|4.67|140.0|6|2|sense MER4E1_dup505|chr9:66296118-66296627:+|1.084791176850963|0.0424718702648892|4.67|140.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 500.3065490722656 2 500.308544 998.602535 NaN NaN NaN NaN NaN NaN NaN 111.26 1 114.78 114.28 115.28 3.5226 0 0 0 0.40604 1 27077 27077 2.5775 0 1 35889 16044 22893 22904 41084 41084 0.10317763159309834 RKHLWFVC 8 Unmodified _RKHLWFVC_ 0 0 0 REV__L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|135|1|anti-sense REV__L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|135|1|anti-sense MSMS UPN48_class_I_Rep_2 6 545.2554931640625 2 544.794746 1087.57494 NaN NaN NaN NaN NaN NaN NaN 119.29 1 122.95 122.45 123.45 3.6652 0 0 0 0.40738 1 28627 28627 0.79363 0 1 + 35890 29604 22894 22905 41085 41085 0.034655366274364496 RKHNLSCPHF 10 Unmodified _RKHNLSCPHF_ 0 0 0 REV__MER11C_dup308|chr6:13244014-13245086:-|1.151864762557423|0.0601161646312557|4.26|151.0|38|1|anti-sense REV__MER11C_dup308|chr6:13244014-13245086:-|1.151864762557423|0.0601161646312557|4.26|151.0|38|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 413.5450134277344 3 413.545225 1237.61384 0.014781 6.1124E-06 -0.1548 -6.4016E-05 -0.14002 -5.7903E-05 413.5451515319272 47.939 1.5497 51.573 51.016 52.566 3.6339 392 118 5 0 0 0 0.27684 1 9498 9498 24.882 24.882 1 4076800 + 35891 31100 22895 22906 41086 41086 0.004542171911225523 RKHNLSCPHF 10 Unmodified _RKHNLSCPHF_ 0 0 0 REV__MER11C_dup308|chr6:13244014-13245086:-|1.151864762557423|0.0601161646312557|4.26|151.0|38|1|anti-sense REV__MER11C_dup308|chr6:13244014-13245086:-|1.151864762557423|0.0601161646312557|4.26|151.0|38|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 413.545225 1237.61384 -0.15063 -6.2294E-05 0.07983 3.3013E-05 -0.070804 -2.9281E-05 413.5452469810272 47.993 1.5793 51.515 51.025 52.604 3.5219 -0.045403 0.00011615 NaN 24.882 363 116 4 NaN NaN NaN NaN 0 NaN NaN 0 3394300 + 35892 31100 22895 22906 0.004542171911225523 RKHNLSCPHF 10 Unmodified _RKHNLSCPHF_ 0 0 0 REV__MER11C_dup308|chr6:13244014-13245086:-|1.151864762557423|0.0601161646312557|4.26|151.0|38|1|anti-sense REV__MER11C_dup308|chr6:13244014-13245086:-|1.151864762557423|0.0601161646312557|4.26|151.0|38|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 413.545225 1237.61384 -0.018048 -7.4635E-06 0.13874 5.7377E-05 0.1207 4.9913E-05 413.5452675082808 47.857 1.6439 51.593 50.957 52.601 3.7361 0.032891 0.00018924 NaN 24.882 419 126 5 NaN NaN NaN NaN 0 NaN NaN 0 3731400 + 35893 31100 22895 22906 0.004542171911225523 RKHPWRRAA 9 Unmodified _RKHPWRRAA_ 0 0 0 ENST00000264607.8_1_2:239335652-239342206:+|nuORF ENST00000264607.8_1_2:239335652-239342206:+|nuORF ENST00000264607.8_1_2:239335652-239342206:+|nuORF MSMS UPN47_class_I_Rep_2 3 589.3427734375 2 589.344315 1176.67408 NaN NaN NaN NaN NaN NaN NaN 88.177 1 91.624 91.124 92.124 3.4471 0 0 0 0.39518 1 21928 21928 1.8442 0.36234 1 35894 5991 22896 22907 41087 41087 0.09280695636562086 RKHPWRRAA 9 Unmodified _RKHPWRRAA_ 0 0 0 ENST00000264607.8_1_2:239335652-239342206:+|nuORF ENST00000264607.8_1_2:239335652-239342206:+|nuORF ENST00000264607.8_1_2:239335652-239342206:+|nuORF MSMS UPN48_class_I_Rep_2 6 589.3434448242188 2 589.344315 1176.67408 NaN NaN NaN NaN NaN NaN NaN 87.431 1 91.159 90.659 91.659 3.7279 0 0 0 0.4007 1 20803 20803 0.52476 0 1 35895 5991 22896 22907 41088 41088 0.09280695636562086 RKHPWRRAA 9 Unmodified _RKHPWRRAA_ 0 0 0 ENST00000264607.8_1_2:239335652-239342206:+|nuORF ENST00000264607.8_1_2:239335652-239342206:+|nuORF ENST00000264607.8_1_2:239335652-239342206:+|nuORF MSMS UPN48_class_I_Rep_2 6 589.3440551757812 2 589.344315 1176.67408 NaN NaN NaN NaN NaN NaN NaN 95.63 1 99.41 98.91 99.91 3.7804 0 0 0 0.4007 1 22726 22726 0.52476 0 1 35896 5991 22896 22907 41089 41089 0.09280695636562086 RKHRKIPF 8 Unmodified _RKHRKIPF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MSMS UPN48_class_I_Rep_1 5 541.7716064453125 2 541.34071 1080.66687 NaN NaN NaN NaN NaN NaN NaN 87.229 1 90.848 90.348 91.348 3.6187 0 0 0 0.40738 1 20901 20901 0.79363 0 1 35897 1621 22897 22908 41090 41090 0.1297596303611499 RKHRRRRRYSK 11 Unmodified _RKHRRRRRYSK_ 0 0 0 REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MULTI-SECPEP UPN46_class_I_Rep_3 1 533.19091796875 3 533.661085 1597.96143 -0.26616 -0.00014204 0.72866 0.00038886 0.4625 0.00024682 533.6616317002663 12.958 0.19895 12.958 12.88 13.079 0 34 16 3 0 0 0 22.551 1 247 247 0.094841 0 1 37850 + 35898 17904 22898 22909 41091 41091 0.1863634450776317 RKHVYNVSG 9 Unmodified _RKHVYNVSG_ 0 0 0 L1PA16_dup2116|chr3:18196788-18198133:-|1.1947335693420549|0.0029530397335555|8.66|147.0|22|2|sense L1PA16_dup2116|chr3:18196788-18198133:-|1.1947335693420549|0.0029530397335555|8.66|147.0|22|2|sense L1PA16_dup2116|chr3:18196788-18198133:-|1.1947335693420549|0.0029530397335555|8.66|147.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 530.289794921875 2 530.28834 1058.56213 NaN NaN NaN NaN NaN NaN NaN 113.57 1 117.24 116.74 117.74 3.663 0 0 0 0.39598 1 27110 27110 1.6526 0.85899 1 35899 14068 22899 22910 41092 41092 0.0351879676891258 RKIEKGII 8 Unmodified _RKIEKGII_ 0 0 0 REV__L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|15|1|sense REV__L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 478.8165283203125 2 478.816202 955.617851 NaN NaN NaN NaN NaN NaN NaN 26.639 1 26.639 26.139 27.139 0 0 0 0 0.40738 1 3839 3839 0.79363 0 1 + 35900 27675 22900 22911 41093 41093 0.13826629956531633 RKIKTNKGA 9 Unmodified _RKIKTNKGA_ 0 0 0 REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS UPN47_class_I_Rep_2 3 508.3218688964844 2 508.322183 1014.62981 -0.24375 -0.0001239 -0.5228 -0.00026575 -0.76655 -0.00038965 508.3217952784815 12.126 0.23849 15.515 15.436 15.674 3.3885 48 30 2 0 0 0 0.31407 1 24 24 13.042 1.5478 1 158970 + 35901 18039 22901 22912 41094 41094 0.1230824669970616 RKILLRKFCQI 11 Unmodified _RKILLRKFCQI_ 0 0 0 ENSG00000050628|ENST00000306666|PTGER3 ENSG00000050628|ENST00000306666|PTGER3 ENSG00000050628|ENST00000306666|PTGER3 MULTI-MSMS UPN47_class_I_Rep_1 2 473.2991638183594 3 473.298991 1416.87514 0.23061 0.00010915 0.34927 0.00016531 0.57987 0.00027445 473.29903698678345 103.08 0.15693 106.85 106.76 106.92 3.7788 35 21 2 0 0 0 0.68478 1 25360 25360 0.094841 0 1 110090 35902 916 22902 22913 41095 41095 0.18338203838197842 RKILLRKFCQI 11 Unmodified _RKILLRKFCQI_ 0 0 0 ENSG00000050628|ENST00000306666|PTGER3 ENSG00000050628|ENST00000306666|PTGER3 ENSG00000050628|ENST00000306666|PTGER3 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 473.298991 1416.87514 0.28833 0.00013647 0.21332 0.00010096 0.50166 0.00023743 473.2990415174265 103.19 0.17848 106.71 106.61 106.78 3.5231 -0.054619 -0.00029815 NaN 0.094841 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 247330 35903 916 22902 22913 0.18338203838197842 RKILLRKFCQI 11 Unmodified _RKILLRKFCQI_ 0 0 0 ENSG00000050628|ENST00000306666|PTGER3 ENSG00000050628|ENST00000306666|PTGER3 ENSG00000050628|ENST00000306666|PTGER3 MULTI-MATCH UPN48_class_I_Rep_2 6 3 473.298991 1416.87514 0.21543 0.00010196 0.64664 0.00030605 0.86207 0.00040802 473.2992448443997 103.02 0.13004 106.73 106.65 106.78 3.7108 -0.033342 0.00031711 NaN 0.094841 35 18 3 NaN NaN NaN NaN 0 NaN NaN 0 358130 35904 916 22902 22913 0.18338203838197842 RKILMIYFK 9 Unmodified _RKILMIYFK_ 0 0 0 L1ME4a_dup25811|chr13:28042233-28042381:+|1.043609152411341|1e-05|16.67|150.0|3|2|sense L1ME4a_dup25811|chr13:28042233-28042381:+|1.043609152411341|1e-05|16.67|150.0|3|2|sense L1ME4a_dup25811|chr13:28042233-28042381:+|1.043609152411341|1e-05|16.67|150.0|3|2|sense MSMS UPN46_class_I_Rep_3 1 606.3701782226562 2 606.370287 1210.72602 NaN NaN NaN NaN NaN NaN NaN 90.159 1 90.159 89.659 90.659 0 0 0 0 0.4007 1 21730 21730 0.52476 0 1 35905 12863 22903 22914 41096 41096 0.12908678215421787 RKIPIDEL 8 Unmodified _RKIPIDEL_ 0 0 0 REV__L1M5_dup47446|chr16:89346585-89346934:+|1.1369857946213018|0.0088441684534101|7.01|151.0|10|3|sense REV__L1M5_dup47446|chr16:89346585-89346934:+|1.1369857946213018|0.0088441684534101|7.01|151.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 492.2972412109375 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 72.305 1 75.869 75.369 76.369 3.5645 0 0 0 0.40746 1 16914 16914 0.69038 0 1 + 35906 24683 22904 22915 41097 41097 0.08914333339930636 RKIQLYHC 8 Unmodified _RKIQLYHC_ 0 0 0 L1ME3C_dup902|chr4:183702360-183702746:+|1.0754766270428815|0.3487446075739444|1.62|151.0|14|3|sense L1ME3C_dup902|chr4:183702360-183702746:+|1.0754766270428815|0.3487446075739444|1.62|151.0|14|3|sense L1ME3C_dup902|chr4:183702360-183702746:+|1.0754766270428815|0.3487446075739444|1.62|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 530.7890014648438 2 530.789661 1059.56477 NaN NaN NaN NaN NaN NaN NaN 42.619 1 46.261 45.761 46.761 3.6415 0 0 0 0.40738 1 7830 7830 0.79363 0 1 35907 12755 22905 22916 41098 41098 0.03736928902185355 RKIVDGRV 8 Unmodified _RKIVDGRV_ 0 0 0 CON__P05784 CON__P05784 CON__P05784 MSMS UPN46_class_I_Rep_3 1 471.79510498046875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 52.906 1 52.906 52.406 53.406 0 0 0 0 0.40625 1 11342 11342 2.3027 0 1 + 35908 635 22906 22917 41099 41099 0.10392288636899139 RKIVNQEPY 9 Unmodified _RKIVNQEPY_ 0 0 0 ERVL-B4-int_dup552|chr3:8856391-8858836:+|1.0861959993399335|0.0343322751393457|4.98|151.0|36|2|sense ERVL-B4-int_dup552|chr3:8856391-8858836:+|1.0861959993399335|0.0343322751393457|4.98|151.0|36|2|sense ERVL-B4-int_dup552|chr3:8856391-8858836:+|1.0861959993399335|0.0343322751393457|4.98|151.0|36|2|sense MSMS UPN47_class_I_Rep_3 4 573.8172607421875 2 573.81693 1145.61931 NaN NaN NaN NaN NaN NaN NaN 55.739 1 58.917 58.417 59.417 3.1779 0 0 0 0.39518 1 12761 12761 1.8442 0.19162 1 35909 7739 22907 22918 41100 41100 0.052322192545943835 RKKALGHP 8 Unmodified _RKKALGHP_ 0 0 0 L1MEd_dup19234|chr17:35683694-35684331:+|1.216659770909454|0.026392677023088|5.53|151.0|11|2|sense L1MEd_dup19234|chr17:35683694-35684331:+|1.216659770909454|0.026392677023088|5.53|151.0|11|2|sense L1MEd_dup19234|chr17:35683694-35684331:+|1.216659770909454|0.026392677023088|5.53|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 453.7850341796875 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 47.332 1 50.573 50.073 51.073 3.2405 0 0 0 0.40738 1 10206 10206 0.79363 0 1 35910 13191 22908 22919 41101 41101 0.09936323328031449 RKKAQHCWF 9 Unmodified _RKKAQHCWF_ 0 0 0 BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|88|3|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|88|3|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|88|3|sense MSMS UPN47_class_I_Rep_1 2 401.87774658203125 3 401.878315 1202.61312 NaN NaN NaN NaN NaN NaN NaN 15.125 1 18.622 18.122 19.122 3.4968 0 0 0 0.40038 1 739 739 0.26902 0.033176 1 35911 421 22909 22920 41102 41102 0.019914225420961884 RKKFFYYS 8 Unmodified _RKKFFYYS_ 0 0 0 REV__L1MB3_dup5766|chr6:42681377-42681919:+|1.0559289103935827|0.0855038736812092|3.63|151.0|3|1|sense REV__L1MB3_dup5766|chr6:42681377-42681919:+|1.0559289103935827|0.0855038736812092|3.63|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 570.2314453125 2 569.805834 1137.59712 NaN NaN NaN NaN NaN NaN NaN 21.907 1 25.553 25.053 26.053 3.6459 0 0 0 0.40746 1 2149 2149 0.69038 0 1 + 35912 25900 22910 22921 41103 41103 0.033820395768543676 RKKFLQLGWN 10 Unmodified _RKKFLQLGWN_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MSMS UPN48_class_I_Rep_2 6 645.3775024414062 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 62.052 1 65.526 65.026 66.026 3.4738 0 0 0 0.53105 1 13834 13834 1.4819 0 1 35913 5028 22911 22922 41104 41104 0.1076046668795243 RKKGLKVLKF 10 Unmodified _RKKGLKVLKF_ 0 0 0 REV__L1M4a2_dup1812|chr17:60242707-60243523:-|2.189071856205499|0.0387953579327904|5.82|151.0|14|2|sense REV__L1M4a2_dup1812|chr17:60242707-60243523:-|2.189071856205499|0.0387953579327904|5.82|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 406.27972412109375 3 406.279926 1215.81795 NaN NaN NaN NaN NaN NaN NaN 42.167 1 45.846 45.346 46.346 3.6792 0 0 0 0.53105 1 8544 8544 0.15932 0 1 + 35914 24505 22912 22923 41105 41105 0.21867104624107014 RKKIIKITA 9 Unmodified _RKKIIKITA_ 0 0 0 L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|3|1|sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|3|1|sense L1MA3_dup2477|chr4:106279312-106282669:-|1.140538455333128|0.0966870428320827|3.56|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 535.3353271484375 2 535.874051 1069.73355 0.45038 0.00024135 0.082849 4.4397E-05 0.53323 0.00028575 535.8739571313561 109 0.17447 112.68 112.59 112.77 3.6715 39 23 2 0 0 0 0.12532 1 25919 25919 0.52476 0 1 3486000 35915 9507 22913 22924 41106 41106 0.20147153807374707 RKKIVRRKLSK 11 Unmodified _RKKIVRRKLSK_ 0 0 0 HAL1_dup5200|chr3:142378424-142378987:+|1.8401558908259747|0.1288896741857131|3.84|151.0|14|3|sense HAL1_dup5200|chr3:142378424-142378987:+|1.8401558908259747|0.1288896741857131|3.84|151.0|14|3|sense HAL1_dup5200|chr3:142378424-142378987:+|1.8401558908259747|0.1288896741857131|3.84|151.0|14|3|sense MSMS UPN47_class_I_Rep_3 4 471.328125 3 471.32805 1410.96232 NaN NaN NaN NaN NaN NaN NaN 17.52 1 20.878 20.378 21.378 3.3581 0 0 0 0.38417 1 1295 1295 0.094841 0 1 35916 7895 22914 22925 41107 41107 0.2732774610412889 RKKKDRKYR 9 Unmodified _RKKKDRKYR_ 0 0 0 REV__L1MA8_dup7082|chr10:74717519-74718915:-|1.2703683718927186|0.1411565241968469|3.17|150.0|50|3|sense REV__L1MA8_dup7082|chr10:74717519-74718915:-|1.2703683718927186|0.1411565241968469|3.17|150.0|50|3|sense MSMS UPN47_class_I_Rep_1 2 639.2606201171875 2 639.399287 1276.78402 NaN NaN NaN NaN NaN NaN NaN 60.069 1 63.467 62.967 63.967 3.3982 0 0 0 0.4007 1 13995 13995 0.52476 0.12405 1 + 35917 25569 22915 22926 41108 41108 0.15670076185074322 RKKKEDEL 8 Unmodified _RKKKEDEL_ 0 0 0 nc|ENSG00000153774|Q9UEE9-2|CFDP1;ENST00000566901.5_1_16:75428986-75467250:-|nuORF;ENSG00000153774|ENST00000283882|CFDP1 nc|ENSG00000153774|Q9UEE9-2|CFDP1 nc|ENSG00000153774|Q9UEE9-2|CFDP1 MULTI-MSMS UPN48_class_I_Rep_1 5 523.6778564453125 2 523.303655 1044.59276 0.31394 0.00016429 -0.24594 -0.0001287 0.068004 3.5587E-05 523.3033453380043 78.308 0.2048 81.83 81.767 81.971 3.5221 27 22 2 0 0 0 0.82752 1 18669 18669 0.69038 0 1 55983 35918 3649 22916 22927 41109 41109 0.07224530363282611 RKKKEYQH 8 Unmodified _RKKKEYQH_ 0 0 0 L1M3f_dup598|chr14:34522256-34522801:-|1.522750061622571|0.2598515154689899|2.55|151.0|8|2|sense L1M3f_dup598|chr14:34522256-34522801:-|1.522750061622571|0.2598515154689899|2.55|151.0|8|2|sense L1M3f_dup598|chr14:34522256-34522801:-|1.522750061622571|0.2598515154689899|2.55|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 558.8165893554688 2 558.817264 1115.61998 NaN NaN NaN NaN NaN NaN NaN 89.262 1 92.655 92.155 93.155 3.3931 0 0 0 0.40746 1 22382 22382 0.69038 0 1 35919 8810 22917 22928 41110 41110 0.06679058694317064 RKKKKKEKKKK 11 Unmodified _RKKKKKEKKKK_ 0 0 0 REV__L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|5|1|sense REV__L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 486.3285827636719 3 486.343588 1456.00894 NaN NaN NaN NaN NaN NaN NaN 73.098 1 76.484 75.984 76.984 3.3861 0 0 0 0.38417 1 17929 17929 0.094841 0 1 + 35920 25617 22918 22929 41111 41111 0.2991718593536916 RKKKKKFSIP 10 Unmodified _RKKKKKFSIP_ 0 0 0 REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 630.4186401367188 2 630.419157 1258.82376 0.56202 0.00035431 -0.59337 -0.00037407 -0.031352 -1.9765E-05 630.4186481463497 108.25 0.39996 111.88 111.71 112.11 3.6355 92 39 3 0 0 0 0.56333 1 26537 26537 1.4819 0 1 2160400 + 35921 17001 22919 22930 41112 41112 0.20470203135801057 RKKKKKFSIP 10 Unmodified _RKKKKKFSIP_ 0 0 0 REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 630.419157 1258.82376 0.43012 0.00027116 -0.76131 -0.00047995 -0.3312 -0.00020879 630.4186648931375 108.37 0.15655 112 111.95 112.11 3.6313 0.17334 -0.00026533 NaN 1.4819 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 671060 + 35922 17001 22919 22930 0.20470203135801057 RKKKKKFSIP 10 Unmodified _RKKKKKFSIP_ 0 0 0 REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 630.419157 1258.82376 0.49604 0.00031271 -0.055663 -3.5091E-05 0.44038 0.00027762 630.9201104892202 108.14 0.41965 111.82 111.72 112.14 3.6746 -0.01234 0.00062439 NaN 1.4819 72 47 2 NaN NaN NaN NaN 0 NaN NaN 0 3697400 + 35923 17001 22919 22930 0.20470203135801057 RKKKKKFSIP 10 Unmodified _RKKKKKFSIP_ 0 0 0 REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense REV__AluJo_dup48482|chr11:117032485-117032720:-|1.0612468618655833|0.0055478647192301|7.58|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 630.419157 1258.82376 0.61011 0.00038462 -0.4378 -0.000276 0.17231 0.00010863 630.4188947087545 107.94 0.1852 111.62 111.47 111.66 3.6813 -0.21309 0.00014257 NaN 1.4819 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3258600 + 35924 17001 22919 22930 0.20470203135801057 RKKKKKKKLC 10 Unmodified _RKKKKKKKLC_ 0 0 0 REV__AluSz6_dup35643|chr14:77529613-77529877:-|2.4723117532484533|0.0337849508184891|6.19|151.0|8|2|sense REV__AluSz6_dup35643|chr14:77529613-77529877:-|2.4723117532484533|0.0337849508184891|6.19|151.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 644.4434814453125 2 644.442109 1286.86967 NaN NaN NaN NaN NaN NaN NaN 41.937 1 45.695 45.195 46.195 3.7579 0 0 0 0.53105 1 7707 7707 0 0 1 + 35925 16950 22920 22931 41113 41113 0.23770525046393232 RKKKKKKSYK 10 Unmodified _RKKKKKKSYK_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN47_class_I_Rep_3 4 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 60.45 1 63.615 63.115 64.115 3.1651 0 0 0 0.53105 1 14196 14196 0.12286 0 1 + 35926 24898 22921 22932 41114 41114 0.22417277055842533 RKKKKKKSYK 10 Unmodified _RKKKKKKSYK_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_1 5 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 50.731 1 54.256 53.756 54.756 3.5246 0 0 0 0.53105 1 10390 10390 0.15932 0 1 + 35927 24898 22921 22932 41115 41115 0.22417277055842533 RKKKKKKSYK 10 Unmodified _RKKKKKKSYK_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_2 6 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.732 1 49.489 48.989 49.989 3.7579 0 0 0 0.53105 1 8858 8858 0.15932 0 1 + 35928 24898 22921 22932 41116 41116 0.22417277055842533 RKKKKLGK 8 Unmodified _RKKKKLGK_ 0 0 0 REV__AluJr_dup896|chr1:21159151-21159455:+|1.089544167204999|0.0106326342474861|6.68|151.0|5|1|sense REV__AluJr_dup896|chr1:21159151-21159455:+|1.089544167204999|0.0106326342474861|6.68|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.3533630371094 2 493.353286 984.692019 0.46771 0.00023074 0.11274 5.5622E-05 0.58045 0.00028637 493.35323466487887 108.26 0.47075 111.79 111.44 111.91 3.5333 106 51 3 0 0 0 0.82752 1 26151 26151 0.69038 0 1 23015000 + 35929 17067 22922 22933 41117 41117 0.19906017838707157 RKKKKQLCN 9 Unmodified _RKKKKQLCN_ 0 0 0 REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|54|2|sense REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|54|2|sense MSMS UPN46_class_I_Rep_3 1 573.3507690429688 2 573.350417 1144.68628 NaN NaN NaN NaN NaN NaN NaN 14.999 1 14.999 14.499 15.499 0 0 0 0 0.4007 1 770 770 0.52476 0 1 + 35930 23942 22923 22934 41118 41118 0.11972551264739195 RKKKMRKLFKG 11 Unmodified _RKKKMRKLFKG_ 0 0 0 ENST00000559305.5_1_15:59191033-59209159:-|nuORF ENST00000559305.5_1_15:59191033-59209159:-|nuORF ENST00000559305.5_1_15:59191033-59209159:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 473.3057861328125 3 473.974619 1418.90203 0.081713 3.873E-05 -0.19716 -9.3449E-05 -0.11545 -5.472E-05 473.97463174727415 51.907 0.30712 55.505 55.467 55.774 3.5979 49 36 2 0 0 0 22.551 1 10706 10706 0.45452 0.046251 1 352070 35931 7446 22924 22935 41119 41119 0.20933312449369623 RKKKMRRN 8 Unmodified _RKKKMRRN_ 0 0 0 REV__ENSG00000170178|ENST00000406506|HOXD12 REV__ENSG00000170178|ENST00000406506|HOXD12 MSMS UPN47_class_I_Rep_3 4 558.8507080078125 2 558.848376 1115.6822 NaN NaN NaN NaN NaN NaN NaN 88.594 1 91.988 91.488 92.488 3.3931 0 0 0 0.40746 1 22221 22221 0.69038 0.16561 1 + 35932 18780 22925 22936 41120 41120 0.12898506561691647 RKKKQHRA 8 Unmodified _RKKKQHRA_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|144|3|sense MSMS UPN47_class_I_Rep_1 2 526.3344116210938 2 526.333416 1050.65228 NaN NaN NaN NaN NaN NaN NaN 68.902 1 72.27 71.77 72.77 3.3678 0 0 0 0.40746 1 16663 16663 0.69038 0 1 + 35933 23532 22926 22937 41121 41121 0.1289789088798443 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.2874755859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 20.761 1 20.761 20.261 21.261 0 0 0 0 0.38417 1 2212 2212 0 0 1 + 35934 16959 22927 22938 41122 41122 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 20.803 1 20.803 20.303 21.303 0 0 0 0 0.38417 1 2225 2225 0 0 1 + 35935 16959 22927 22938 41123 41123 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 27.096 1 27.096 26.596 27.596 0 0 0 0 0.38417 1 3975 3975 0 0 1 + 35936 16959 22927 22938 41124 41124 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.33648681640625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 27.222 1 27.222 26.722 27.722 0 0 0 0 0.38417 1 4011 4011 0 0 1 + 35937 16959 22927 22938 41125 41125 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 27.893 1 27.893 27.393 28.393 0 0 0 0 0.38417 1 4205 4205 0 0 1 + 35938 16959 22927 22938 41126 41126 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 106.52 1 106.52 106.02 107.02 0 0 0 0 0.38417 1 25978 25978 0 0 1 + 35939 16959 22927 22938 41127 41127 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.33740234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 110.4 1 110.4 109.9 110.9 0 0 0 0 0.38417 1 27190 27190 0 0 1 + 35940 16959 22927 22938 41128 41128 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.336669921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 110.63 1 110.63 110.13 111.13 0 0 0 0 0.38417 1 27251 27251 0 0 1 + 35941 16959 22927 22938 41129 41129 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 110.76 1 110.76 110.26 111.26 0 0 0 0 0.38417 1 27283 27283 0 0 1 + 35942 16959 22927 22938 41130 41130 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3366394042969 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 111.62 1 111.62 111.12 112.12 0 0 0 0 0.38417 1 27528 27528 0 0 1 + 35943 16959 22927 22938 41131 41131 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.33624267578125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.46 1 114.46 113.96 114.96 0 0 0 0 0.38417 1 28289 28289 0 0 1 + 35944 16959 22927 22938 41132 41132 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.7867126464844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 115.2 1 115.2 114.7 115.7 0 0 0 0 0.38417 1 28493 28493 0 0 1 + 35945 16959 22927 22938 41133 41133 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 117.85 1 117.85 117.35 118.35 0 0 0 0 0.38417 1 29231 29231 0 0 1 + 35946 16959 22927 22938 41134 41134 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 119.18 1 119.18 118.68 119.68 0 0 0 0 0.38417 1 29611 29611 0 0 1 + 35947 16959 22927 22938 41135 41135 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 119.54 1 119.54 119.04 120.04 0 0 0 0 0.38417 1 29715 29715 0 0 1 + 35948 16959 22927 22938 41136 41136 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 120 1 119.99 119.49 120.49 -0.011971 0 0 0 0.38417 1 29851 29851 0 0 1 + 35949 16959 22927 22938 41137 41137 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 481.3363952636719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 102.29 1 106.08 105.58 106.58 3.7888 0 0 0 0.38417 1 25186 25186 0 0 1 + 35950 16959 22927 22938 41138 41138 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 481.3363037109375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 102.5 1 106.29 105.79 106.79 3.7888 0 0 0 0.38417 1 25227 25227 0 0 1 + 35951 16959 22927 22938 41139 41139 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3372802734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.674 1 61.955 61.455 62.455 3.2818 0 0 0 0.38417 1 13600 13600 0 0 1 + 35952 16959 22927 22938 41140 41140 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.899 1 62.18 61.68 62.68 3.2818 0 0 0 0.38417 1 13669 13669 0 0 1 + 35953 16959 22927 22938 41141 41141 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33734130859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 59.066 1 62.348 61.848 62.848 3.2818 0 0 0 0.38417 1 13721 13721 0 0 1 + 35954 16959 22927 22938 41142 41142 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 59.464 1 62.737 62.237 63.237 3.2731 0 0 0 0.38417 1 13843 13843 0 0 1 + 35955 16959 22927 22938 41143 41143 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 60.703 1 63.968 63.468 64.468 3.2654 0 0 0 0.38417 1 14220 14220 0 0 1 + 35956 16959 22927 22938 41144 41144 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.153 1 64.419 63.919 64.919 3.2654 0 0 0 0.38417 1 14354 14354 0 0 1 + 35957 16959 22927 22938 41145 41145 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3377380371094 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.342 1 64.608 64.108 65.108 3.2654 0 0 0 0.38417 1 14413 14413 0 0 1 + 35958 16959 22927 22938 41146 41146 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.111 1 65.37 64.87 65.87 3.2594 0 0 0 0.38417 1 14645 14645 0 0 1 + 35959 16959 22927 22938 41147 41147 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.247 1 65.507 65.007 66.007 3.2594 0 0 0 0.38417 1 14687 14687 0 0 1 + 35960 16959 22927 22938 41148 41148 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3373718261719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.518 1 65.773 65.273 66.273 3.2558 0 0 0 0.38417 1 14769 14769 0 0 1 + 35961 16959 22927 22938 41149 41149 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.188 1 66.444 65.944 66.944 3.2558 0 0 0 0.38417 1 14975 14975 0 0 1 + 35962 16959 22927 22938 41150 41150 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.901 1 67.156 66.656 67.656 3.2556 0 0 0 0.38417 1 15187 15187 0 0 1 + 35963 16959 22927 22938 41151 41151 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.524 1 67.78 67.28 68.28 3.2556 0 0 0 0.38417 1 15377 15377 0 0 1 + 35964 16959 22927 22938 41152 41152 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3375549316406 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.772 1 68.027 67.527 68.527 3.2556 0 0 0 0.38417 1 15454 15454 0 0 1 + 35965 16959 22927 22938 41153 41153 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33673095703125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.104 1 68.36 67.86 68.86 3.2556 0 0 0 0.38417 1 15554 15554 0 0 1 + 35966 16959 22927 22938 41154 41154 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33770751953125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.251 1 68.507 68.007 69.007 3.2556 0 0 0 0.38417 1 15600 15600 0 0 1 + 35967 16959 22927 22938 41155 41155 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33660888671875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.529 1 68.784 68.284 69.284 3.2556 0 0 0 0.38417 1 15684 15684 0 0 1 + 35968 16959 22927 22938 41156 41156 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33746337890625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.207 1 69.466 68.966 69.966 3.2588 0 0 0 0.38417 1 15891 15891 0 0 1 + 35969 16959 22927 22938 41157 41157 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.38 1 69.639 69.139 70.139 3.2588 0 0 0 0.38417 1 15944 15944 0 0 1 + 35970 16959 22927 22938 41158 41158 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.512 1 69.771 69.271 70.271 3.2588 0 0 0 0.38417 1 15985 15985 0 0 1 + 35971 16959 22927 22938 41159 41159 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.635 1 69.894 69.394 70.394 3.2588 0 0 0 0.38417 1 16020 16020 0 0 1 + 35972 16959 22927 22938 41160 41160 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.065 1 70.329 69.829 70.829 3.2636 0 0 0 0.38417 1 16152 16152 0 0 1 + 35973 16959 22927 22938 41161 41161 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.189 1 70.452 69.952 70.952 3.2636 0 0 0 0.38417 1 16189 16189 0 0 1 + 35974 16959 22927 22938 41162 41162 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.328 1 70.592 70.092 71.092 3.2636 0 0 0 0.38417 1 16231 16231 0 0 1 + 35975 16959 22927 22938 41163 41163 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33740234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.526 1 70.79 70.29 71.29 3.2636 0 0 0 0.38417 1 16292 16292 0 0 1 + 35976 16959 22927 22938 41164 41164 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.661 1 70.925 70.425 71.425 3.2636 0 0 0 0.38417 1 16331 16331 0 0 1 + 35977 16959 22927 22938 41165 41165 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3373718261719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.793 1 71.057 70.557 71.557 3.2636 0 0 0 0.38417 1 16370 16370 0 0 1 + 35978 16959 22927 22938 41166 41166 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.938 1 71.207 70.707 71.707 3.2696 0 0 0 0.38417 1 16411 16411 0 0 1 + 35979 16959 22927 22938 41167 41167 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3372802734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.062 1 71.332 70.832 71.832 3.2696 0 0 0 0.38417 1 16450 16450 0 0 1 + 35980 16959 22927 22938 41168 41168 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.718 1 74.001 73.501 74.501 3.2828 0 0 0 0.38417 1 17247 17247 0 0 1 + 35981 16959 22927 22938 41169 41169 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.197 1 74.487 73.987 74.987 3.2899 0 0 0 0.38417 1 17386 17386 0 0 1 + 35982 16959 22927 22938 41170 41170 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.39 1 74.68 74.18 75.18 3.2899 0 0 0 0.38417 1 17445 17445 0 0 1 + 35983 16959 22927 22938 41171 41171 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.52 1 74.809 74.309 75.309 3.2899 0 0 0 0.38417 1 17484 17484 0 0 1 + 35984 16959 22927 22938 41172 41172 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.832 1 75.122 74.622 75.622 3.2899 0 0 0 0.38417 1 17580 17580 0 0 1 + 35985 16959 22927 22938 41173 41173 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.992 1 75.282 74.782 75.782 3.2899 0 0 0 0.38417 1 17625 17625 0 0 1 + 35986 16959 22927 22938 41174 41174 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 77.323 1 80.654 80.154 81.154 3.3315 0 0 0 0.38417 1 19175 19175 0 0 1 + 35987 16959 22927 22938 41175 41175 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 77.928 1 81.271 80.771 81.771 3.3428 0 0 0 0.38417 1 19350 19350 0 0 1 + 35988 16959 22927 22938 41176 41176 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33746337890625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 80.639 1 84.008 83.508 84.508 3.3694 0 0 0 0.38417 1 20075 20075 0 0 1 + 35989 16959 22927 22938 41177 41177 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 80.914 1 84.298 83.798 84.798 3.3839 0 0 0 0.38417 1 20147 20147 0 0 1 + 35990 16959 22927 22938 41178 41178 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 81.055 1 84.439 83.939 84.939 3.3839 0 0 0 0.38417 1 20185 20185 0 0 1 + 35991 16959 22927 22938 41179 41179 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 81.243 1 84.627 84.127 85.127 3.3839 0 0 0 0.38417 1 20232 20232 0 0 1 + 35992 16959 22927 22938 41180 41180 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 85.769 1 89.202 88.702 89.702 3.4329 0 0 0 0.38417 1 21338 21338 0 0 1 + 35993 16959 22927 22938 41181 41181 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.7861022949219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.49 1 118 117.5 118.5 3.5039 0 0 0 0.38417 1 27882 27882 0 0 1 + 35994 16959 22927 22938 41182 41182 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3373718261719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.74 1 118.25 117.75 118.75 3.5039 0 0 0 0.38417 1 27949 27949 0 0 1 + 35995 16959 22927 22938 41183 41183 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.3366394042969 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.95 1 118.46 117.96 118.96 3.5039 0 0 0 0.38417 1 28011 28011 0 0 1 + 35996 16959 22927 22938 41184 41184 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 481.336669921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 115.08 1 118.59 118.09 119.09 3.5039 0 0 0 0.38417 1 28049 28049 0 0 1 + 35997 16959 22927 22938 41185 41185 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3364562988281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 56.026 1 59.198 58.698 59.698 3.1721 0 0 0 0.38417 1 12849 12849 0 0 1 + 35998 16959 22927 22938 41186 41186 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3367004394531 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 56.806 1 59.979 59.479 60.479 3.1721 0 0 0 0.38417 1 13086 13086 0 0 1 + 35999 16959 22927 22938 41187 41187 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.429 1 61.594 61.094 62.094 3.1658 0 0 0 0.38417 1 13576 13576 0 0 1 + 36000 16959 22927 22938 41188 41188 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.998 1 62.164 61.664 62.664 3.1658 0 0 0 0.38417 1 13752 13752 0 0 1 + 36001 16959 22927 22938 41189 41189 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 59.174 1 62.34 61.84 62.84 3.1658 0 0 0 0.38417 1 13806 13806 0 0 1 + 36002 16959 22927 22938 41190 41190 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3374938964844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 60.596 1 63.761 63.261 64.261 3.1651 0 0 0 0.38417 1 14240 14240 0 0 1 + 36003 16959 22927 22938 41191 41191 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3367004394531 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.314 1 64.479 63.979 64.979 3.1651 0 0 0 0.38417 1 14455 14455 0 0 1 + 36004 16959 22927 22938 41192 41192 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3374938964844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.038 1 65.204 64.704 65.704 3.1667 0 0 0 0.38417 1 14679 14679 0 0 1 + 36005 16959 22927 22938 41193 41193 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3381042480469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.394 1 65.56 65.06 66.06 3.1667 0 0 0 0.38417 1 14789 14789 0 0 1 + 36006 16959 22927 22938 41194 41194 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.436 1 65.603 65.103 66.103 3.1667 0 0 0 0.38417 1 14802 14802 0 0 1 + 36007 16959 22927 22938 41195 41195 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.604 1 65.774 65.274 66.274 3.1698 0 0 0 0.38417 1 14854 14854 0 0 1 + 36008 16959 22927 22938 41196 41196 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3373718261719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.19 1 66.359 65.859 66.859 3.1698 0 0 0 0.38417 1 15034 15034 0 0 1 + 36009 16959 22927 22938 41197 41197 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33740234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.509 1 66.678 66.178 67.178 3.1698 0 0 0 0.38417 1 15127 15127 0 0 1 + 36010 16959 22927 22938 41198 41198 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33758544921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.668 1 66.842 66.342 67.342 3.1741 0 0 0 0.38417 1 15176 15176 0 0 1 + 36011 16959 22927 22938 41199 41199 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.811 1 66.985 66.485 67.485 3.1741 0 0 0 0.38417 1 15218 15218 0 0 1 + 36012 16959 22927 22938 41200 41200 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.22 1 67.395 66.895 67.895 3.1741 0 0 0 0.38417 1 15344 15344 0 0 1 + 36013 16959 22927 22938 41201 41201 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.379 1 67.553 67.053 68.053 3.1741 0 0 0 0.38417 1 15393 15393 0 0 1 + 36014 16959 22927 22938 41202 41202 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3365173339844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.516 1 67.69 67.19 68.19 3.1741 0 0 0 0.38417 1 15434 15434 0 0 1 + 36015 16959 22927 22938 41203 41203 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.787 1 67.967 67.467 68.467 3.1795 0 0 0 0.38417 1 15518 15518 0 0 1 + 36016 16959 22927 22938 41204 41204 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3367614746094 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.944 1 68.124 67.624 68.624 3.1795 0 0 0 0.38417 1 15566 15566 0 0 1 + 36017 16959 22927 22938 41205 41205 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.323 1 68.502 68.002 69.002 3.1795 0 0 0 0.38417 1 15681 15681 0 0 1 + 36018 16959 22927 22938 41206 41206 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3364562988281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.564 1 68.743 68.243 69.243 3.1795 0 0 0 0.38417 1 15754 15754 0 0 1 + 36019 16959 22927 22938 41207 41207 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.034 1 69.219 68.719 69.719 3.1853 0 0 0 0.38417 1 15899 15899 0 0 1 + 36020 16959 22927 22938 41208 41208 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.396 1 69.581 69.081 70.081 3.1853 0 0 0 0.38417 1 16011 16011 0 0 1 + 36021 16959 22927 22938 41209 41209 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.627 1 69.812 69.312 70.312 3.1853 0 0 0 0.38417 1 16082 16082 0 0 1 + 36022 16959 22927 22938 41210 41210 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3372802734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.911 1 71.109 70.609 71.609 3.1977 0 0 0 0.38417 1 16469 16469 0 0 1 + 36023 16959 22927 22938 41211 41211 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33660888671875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.081 1 71.278 70.778 71.778 3.1977 0 0 0 0.38417 1 16521 16521 0 0 1 + 36024 16959 22927 22938 41212 41212 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.259 1 71.456 70.956 71.956 3.1977 0 0 0 0.38417 1 16574 16574 0 0 1 + 36025 16959 22927 22938 41213 41213 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.391 1 71.588 71.088 72.088 3.1977 0 0 0 0.38417 1 16615 16615 0 0 1 + 36026 16959 22927 22938 41214 41214 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3369140625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.608 1 71.806 71.306 72.306 3.1977 0 0 0 0.38417 1 16683 16683 0 0 1 + 36027 16959 22927 22938 41215 41215 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.197 1 73.409 72.909 73.909 3.2113 0 0 0 0.38417 1 17158 17158 0 0 1 + 36028 16959 22927 22938 41216 41216 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3365783691406 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.335 1 73.546 73.046 74.046 3.2113 0 0 0 0.38417 1 17200 17200 0 0 1 + 36029 16959 22927 22938 41217 41217 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.486 1 73.697 73.197 74.197 3.2113 0 0 0 0.38417 1 17245 17245 0 0 1 + 36030 16959 22927 22938 41218 41218 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.653 1 73.865 73.365 74.365 3.2113 0 0 0 0.38417 1 17296 17296 0 0 1 + 36031 16959 22927 22938 41219 41219 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33660888671875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.802 1 74.013 73.513 74.513 3.2113 0 0 0 0.38417 1 17341 17341 0 0 1 + 36032 16959 22927 22938 41220 41220 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.925 1 75.144 74.644 75.644 3.2188 0 0 0 0.38417 1 17677 17677 0 0 1 + 36033 16959 22927 22938 41221 41221 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.092 1 75.311 74.811 75.811 3.2188 0 0 0 0.38417 1 17726 17726 0 0 1 + 36034 16959 22927 22938 41222 41222 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.292 1 75.519 75.019 76.019 3.2271 0 0 0 0.38417 1 17788 17788 0 0 1 + 36035 16959 22927 22938 41223 41223 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3365783691406 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.515 1 75.742 75.242 76.242 3.2271 0 0 0 0.38417 1 17855 17855 0 0 1 + 36036 16959 22927 22938 41224 41224 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.688 1 75.915 75.415 76.415 3.2271 0 0 0 0.38417 1 17908 17908 0 0 1 + 36037 16959 22927 22938 41225 41225 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 73.269 1 76.496 75.996 76.996 3.2271 0 0 0 0.38417 1 18084 18084 0 0 1 + 36038 16959 22927 22938 41226 41226 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 73.58 1 76.816 76.316 77.316 3.2363 0 0 0 0.38417 1 18180 18180 0 0 1 + 36039 16959 22927 22938 41227 41227 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 73.71 1 76.946 76.446 77.446 3.2363 0 0 0 0.38417 1 18219 18219 0 0 1 + 36040 16959 22927 22938 41228 41228 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 73.864 1 77.1 76.6 77.6 3.2363 0 0 0 0.38417 1 18262 18262 0 0 1 + 36041 16959 22927 22938 41229 41229 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 74.063 1 77.3 76.8 77.8 3.2363 0 0 0 0.38417 1 18317 18317 0 0 1 + 36042 16959 22927 22938 41230 41230 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 80.165 1 83.474 82.974 83.974 3.309 0 0 0 0.38417 1 20065 20065 0.073264 0.073264 1 + 36043 16959 22927 22938 41231 41231 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.336669921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 111.09 1 114.62 114.12 115.12 3.529 0 0 0 0.38417 1 27259 27259 0 0 1 + 36044 16959 22927 22938 41232 41232 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3381042480469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 111.2 1 114.72 114.22 115.22 3.529 0 0 0 0.38417 1 27287 27287 0 0 1 + 36045 16959 22927 22938 41233 41233 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 112.4 1 115.91 115.41 116.41 3.5098 0 0 0 0.38417 1 27593 27593 0 0 1 + 36046 16959 22927 22938 41234 41234 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3372802734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.12 1 116.63 116.13 117.13 3.5098 0 0 0 0.38417 1 27741 27741 0 0 1 + 36047 16959 22927 22938 41235 41235 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3376159667969 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.24 1 116.75 116.25 117.25 3.5098 0 0 0 0.38417 1 27771 27771 0 0 1 + 36048 16959 22927 22938 41236 41236 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.36 1 116.87 116.37 117.37 3.5098 0 0 0 0.38417 1 27805 27805 0 0 1 + 36049 16959 22927 22938 41237 41237 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.53 1 117.03 116.53 117.53 3.4963 0 0 0 0.38417 1 27852 27852 0 0 1 + 36050 16959 22927 22938 41238 41238 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3365478515625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.67 1 117.16 116.66 117.66 3.4963 0 0 0 0.38417 1 27889 27889 0 0 1 + 36051 16959 22927 22938 41239 41239 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33740234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.41 116.91 117.91 3.4963 0 0 0 0.38417 1 27956 27956 0 0 1 + 36052 16959 22927 22938 41240 41240 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3373718261719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.13 1 117.63 117.13 118.13 3.4963 0 0 0 0.38417 1 28013 28013 0 0 1 + 36053 16959 22927 22938 41241 41241 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3367614746094 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.33 1 117.82 117.32 118.32 3.4963 0 0 0 0.38417 1 28069 28069 0 0 1 + 36054 16959 22927 22938 41242 41242 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.62 1 118.1 117.6 118.6 3.4802 0 0 0 0.38417 1 28153 28153 0 0 1 + 36055 16959 22927 22938 41243 41243 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.74 1 118.22 117.72 118.72 3.4802 0 0 0 0.38417 1 28189 28189 0 0 1 + 36056 16959 22927 22938 41244 41244 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 481.3365173339844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.97 1 118.45 117.95 118.95 3.4802 0 0 0 0.38417 1 28253 28253 0 0 1 + 36057 16959 22927 22938 41245 41245 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 481.33575439453125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 76.383 1 79.893 79.393 80.393 3.5102 0 0 0 0.38417 1 18141 18141 0 0 1 + 36058 16959 22927 22938 41246 41246 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 481.3352355957031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 76.425 1 79.936 79.436 80.436 3.5102 0 0 0 0.38417 1 18150 18150 0 0 1 + 36059 16959 22927 22938 41247 41247 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.704 1 62.203 61.703 62.703 3.4987 0 0 0 0.38417 1 12810 12810 0 0 1 + 36060 16959 22927 22938 41248 41248 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33758544921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.008 1 64.487 63.987 64.987 3.4785 0 0 0 0.38417 1 13517 13517 0 0 1 + 36061 16959 22927 22938 41249 41249 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3374328613281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.16 1 64.638 64.138 65.138 3.4785 0 0 0 0.38417 1 13563 13563 0 0 1 + 36062 16959 22927 22938 41250 41250 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.65 1 65.124 64.624 65.624 3.4738 0 0 0 0.38417 1 13713 13713 0 0 1 + 36063 16959 22927 22938 41251 41251 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3365173339844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.884 1 65.358 64.858 65.858 3.4738 0 0 0 0.38417 1 13784 13784 0 0 1 + 36064 16959 22927 22938 41252 41252 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3374328613281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.281 1 65.755 65.255 66.255 3.4738 0 0 0 0.38417 1 13905 13905 0 0 1 + 36065 16959 22927 22938 41253 41253 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.416 1 65.889 65.389 66.389 3.4738 0 0 0 0.38417 1 13947 13947 0 0 1 + 36066 16959 22927 22938 41254 41254 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.786865234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.033 1 66.506 66.006 67.006 3.4738 0 0 0 0.38417 1 14138 14138 0 0 1 + 36067 16959 22927 22938 41255 41255 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.087 1 66.561 66.061 67.061 3.4738 0 0 0 0.38417 1 14155 14155 0 0 1 + 36068 16959 22927 22938 41256 41256 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3365173339844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.291 1 66.764 66.264 67.264 3.4738 0 0 0 0.38417 1 14218 14218 0 0 1 + 36069 16959 22927 22938 41257 41257 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3367004394531 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.895 1 67.369 66.869 67.869 3.4743 0 0 0 0.38417 1 14401 14401 0 0 1 + 36070 16959 22927 22938 41258 41258 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.216 1 67.691 67.191 68.191 3.4743 0 0 0 0.38417 1 14499 14499 0 0 1 + 36071 16959 22927 22938 41259 41259 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3367004394531 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.459 1 67.933 67.433 68.433 3.4743 0 0 0 0.38417 1 14574 14574 0 0 1 + 36072 16959 22927 22938 41260 41260 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.592 1 68.067 67.567 68.567 3.4743 0 0 0 0.38417 1 14615 14615 0 0 1 + 36073 16959 22927 22938 41261 41261 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.744 1 68.223 67.723 68.723 3.4792 0 0 0 0.38417 1 14662 14662 0 0 1 + 36074 16959 22927 22938 41262 41262 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.177 1 68.657 68.157 69.157 3.4792 0 0 0 0.38417 1 14796 14796 0 0 1 + 36075 16959 22927 22938 41263 41263 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3365783691406 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.361 1 68.84 68.34 69.34 3.4792 0 0 0 0.38417 1 14852 14852 0 0 1 + 36076 16959 22927 22938 41264 41264 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3376159667969 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.613 1 69.092 68.592 69.592 3.4792 0 0 0 0.38417 1 14927 14927 0 0 1 + 36077 16959 22927 22938 41265 41265 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.806 1 69.292 68.792 69.792 3.4866 0 0 0 0.38417 1 14985 14985 0 0 1 + 36078 16959 22927 22938 41266 41266 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.94 1 69.426 68.926 69.926 3.4866 0 0 0 0.38417 1 15027 15027 0 0 1 + 36079 16959 22927 22938 41267 41267 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.087 1 69.574 69.074 70.074 3.4866 0 0 0 0.38417 1 15072 15072 0 0 1 + 36080 16959 22927 22938 41268 41268 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.331 1 69.817 69.317 70.317 3.4866 0 0 0 0.38417 1 15146 15146 0 0 1 + 36081 16959 22927 22938 41269 41269 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.646 1 70.132 69.632 70.632 3.4866 0 0 0 0.38417 1 15242 15242 0 0 1 + 36082 16959 22927 22938 41270 41270 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.797 1 70.293 69.793 70.793 3.4964 0 0 0 0.38417 1 15288 15288 0 0 1 + 36083 16959 22927 22938 41271 41271 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.992 1 70.488 69.988 70.988 3.4964 0 0 0 0.38417 1 15348 15348 0 0 1 + 36084 16959 22927 22938 41272 41272 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.605 1 71.102 70.602 71.602 3.4964 0 0 0 0.38417 1 15535 15535 0 0 1 + 36085 16959 22927 22938 41273 41273 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.734 1 71.23 70.73 71.73 3.4964 0 0 0 0.38417 1 15573 15573 0 0 1 + 36086 16959 22927 22938 41274 41274 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33660888671875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.879 1 71.387 70.887 71.887 3.5083 0 0 0 0.38417 1 15617 15617 0 0 1 + 36087 16959 22927 22938 41275 41275 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.714 1 72.222 71.722 72.722 3.5083 0 0 0 0.38417 1 15865 15865 0 0 1 + 36088 16959 22927 22938 41276 41276 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.936 1 72.45 71.95 72.95 3.5138 0 0 0 0.38417 1 15934 15934 0 0 1 + 36089 16959 22927 22938 41277 41277 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3375244140625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.094 1 72.616 72.116 73.116 3.5216 0 0 0 0.38417 1 15982 15982 0 0 1 + 36090 16959 22927 22938 41278 41278 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369140625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.224 1 72.746 72.246 73.246 3.5216 0 0 0 0.38417 1 16023 16023 0 0 1 + 36091 16959 22927 22938 41279 41279 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.629 1 73.151 72.651 73.651 3.5216 0 0 0 0.38417 1 16142 16142 0 0 1 + 36092 16959 22927 22938 41280 41280 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33673095703125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.781 1 73.303 72.803 73.803 3.5216 0 0 0 0.38417 1 16188 16188 0 0 1 + 36093 16959 22927 22938 41281 41281 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.929 1 73.45 72.95 73.95 3.5216 0 0 0 0.38417 1 16233 16233 0 0 1 + 36094 16959 22927 22938 41282 41282 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.066 1 73.602 73.102 74.102 3.5359 0 0 0 0.38417 1 16275 16275 0 0 1 + 36095 16959 22927 22938 41283 41283 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33734130859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.197 1 73.733 73.233 74.233 3.5359 0 0 0 0.38417 1 16315 16315 0 0 1 + 36096 16959 22927 22938 41284 41284 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3374328613281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.172 1 75.724 75.224 76.224 3.5522 0 0 0 0.38417 1 16876 16876 0 0 1 + 36097 16959 22927 22938 41285 41285 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.313 1 75.877 75.377 76.377 3.5645 0 0 0 0.38417 1 16917 16917 0 0 1 + 36098 16959 22927 22938 41286 41286 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33740234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.454 1 76.019 75.519 76.519 3.5645 0 0 0 0.38417 1 16958 16958 0 0 1 + 36099 16959 22927 22938 41287 41287 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.591 1 76.156 75.656 76.656 3.5645 0 0 0 0.38417 1 16998 16998 0 0 1 + 36100 16959 22927 22938 41288 41288 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 77.649 1 81.271 80.771 81.771 3.6222 0 0 0 0.38417 1 18389 18389 0 0 1 + 36101 16959 22927 22938 41289 41289 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33734130859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 77.827 1 81.449 80.949 81.949 3.6222 0 0 0 0.38417 1 18443 18443 0 0 1 + 36102 16959 22927 22938 41290 41290 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 77.949 1 81.572 81.072 82.072 3.6222 0 0 0 0.38417 1 18479 18479 0 0 1 + 36103 16959 22927 22938 41291 41291 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.086 1 81.709 81.209 82.209 3.6222 0 0 0 0.38417 1 18517 18517 0 0 1 + 36104 16959 22927 22938 41292 41292 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.241 1 81.863 81.363 82.363 3.6222 0 0 0 0.38417 1 18556 18556 0 0 1 + 36105 16959 22927 22938 41293 41293 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.36 1 81.982 81.482 82.482 3.6222 0 0 0 0.38417 1 18588 18588 0 0 1 + 36106 16959 22927 22938 41294 41294 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.516 1 82.138 81.638 82.638 3.6222 0 0 0 0.38417 1 18626 18626 0 0 1 + 36107 16959 22927 22938 41295 41295 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 80.083 1 83.727 83.227 84.227 3.6446 0 0 0 0.38417 1 19024 19024 0 0 1 + 36108 16959 22927 22938 41296 41296 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 80.704 1 84.348 83.848 84.848 3.6446 0 0 0 0.38417 1 19148 19148 0 0 1 + 36109 16959 22927 22938 41297 41297 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 82.248 1 85.917 85.417 86.417 3.669 0 0 0 0.38417 1 19535 19535 0 0 1 + 36110 16959 22927 22938 41298 41298 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 87.187 1 90.904 90.404 91.404 3.7171 0 0 0 0.38417 1 20740 20740 0 0 1 + 36111 16959 22927 22938 41299 41299 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33642578125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 87.541 1 91.269 90.769 91.769 3.7279 0 0 0 0.38417 1 20833 20833 0 0 1 + 36112 16959 22927 22938 41300 41300 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 111.94 1 115.6 115.1 116.1 3.6666 0 0 0 0.38417 1 26642 26642 0 0 1 + 36113 16959 22927 22938 41301 41301 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33831787109375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 112.23 1 115.89 115.39 116.39 3.6648 0 0 0 0.38417 1 26727 26727 0 0 1 + 36114 16959 22927 22938 41302 41302 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 112.32 1 115.99 115.49 116.49 3.6648 0 0 0 0.38417 1 26755 26755 0 0 1 + 36115 16959 22927 22938 41303 41303 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3372802734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 112.79 1 116.46 115.96 116.96 3.6648 0 0 0 0.38417 1 26889 26889 0 0 1 + 36116 16959 22927 22938 41304 41304 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3365173339844 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 112.92 1 116.58 116.08 117.08 3.6648 0 0 0 0.38417 1 26923 26923 0 0 1 + 36117 16959 22927 22938 41305 41305 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 113.2 1 116.87 116.37 117.37 3.6648 0 0 0 0.38417 1 27005 27005 0 0 1 + 36118 16959 22927 22938 41306 41306 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.237 1 61.769 61.269 62.269 3.5317 0 0 0 0.38417 1 12601 12601 0 0 1 + 36119 16959 22927 22938 41307 41307 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.456 1 61.979 61.479 62.479 3.5231 0 0 0 0.38417 1 12669 12669 0 0 1 + 36120 16959 22927 22938 41308 41308 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.608 1 62.131 61.631 62.631 3.5231 0 0 0 0.38417 1 12716 12716 0 0 1 + 36121 16959 22927 22938 41309 41309 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 58.972 1 62.495 61.995 62.995 3.5231 0 0 0 0.38417 1 12829 12829 0 0 1 + 36122 16959 22927 22938 41310 41310 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.27154541015625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 60.066 1 63.583 63.083 64.083 3.5169 0 0 0 0.38417 1 13164 13164 0 0 1 + 36123 16959 22927 22938 41311 41311 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 60.976 1 64.489 63.989 64.989 3.5129 0 0 0 0.38417 1 13438 13438 0 0 1 + 36124 16959 22927 22938 41312 41312 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33734130859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.602 1 65.115 64.615 65.615 3.5129 0 0 0 0.38417 1 13627 13627 0 0 1 + 36125 16959 22927 22938 41313 41313 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 61.782 1 65.292 64.792 65.792 3.5104 0 0 0 0.38417 1 13681 13681 0 0 1 + 36126 16959 22927 22938 41314 41314 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.217 1 65.727 65.227 66.227 3.5104 0 0 0 0.38417 1 13812 13812 0 0 1 + 36127 16959 22927 22938 41315 41315 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.274 1 65.785 65.285 66.285 3.5104 0 0 0 0.38417 1 13830 13830 0 0 1 + 36128 16959 22927 22938 41316 41316 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.329 1 65.839 65.339 66.339 3.5104 0 0 0 0.38417 1 13847 13847 0 0 1 + 36129 16959 22927 22938 41317 41317 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.538 1 66.048 65.548 66.548 3.5104 0 0 0 0.38417 1 13908 13908 0 0 1 + 36130 16959 22927 22938 41318 41318 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3374328613281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 62.912 1 66.421 65.921 66.921 3.5091 0 0 0 0.38417 1 14022 14022 0 0 1 + 36131 16959 22927 22938 41319 41319 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.116 1 66.625 66.125 67.125 3.5091 0 0 0 0.38417 1 14085 14085 0 0 1 + 36132 16959 22927 22938 41320 41320 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 63.899 1 67.408 66.908 67.908 3.5083 0 0 0 0.38417 1 14323 14323 0 0 1 + 36133 16959 22927 22938 41321 41321 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33673095703125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.103 1 67.611 67.111 68.111 3.5083 0 0 0 0.38417 1 14385 14385 0 0 1 + 36134 16959 22927 22938 41322 41322 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.365 1 67.873 67.373 68.373 3.5083 0 0 0 0.38417 1 14465 14465 0 0 1 + 36135 16959 22927 22938 41323 41323 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.532 1 68.04 67.54 68.54 3.5083 0 0 0 0.38417 1 14516 14516 0 0 1 + 36136 16959 22927 22938 41324 41324 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 64.665 1 68.173 67.673 68.673 3.5083 0 0 0 0.38417 1 14554 14554 0 0 1 + 36137 16959 22927 22938 41325 41325 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3372497558594 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.007 1 68.515 68.015 69.015 3.5077 0 0 0 0.38417 1 14657 14657 0 0 1 + 36138 16959 22927 22938 41326 41326 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.224 1 68.731 68.231 69.231 3.5077 0 0 0 0.38417 1 14723 14723 0 0 1 + 36139 16959 22927 22938 41327 41327 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.369 1 68.877 68.377 69.377 3.5077 0 0 0 0.38417 1 14767 14767 0 0 1 + 36140 16959 22927 22938 41328 41328 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3367919921875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.524 1 69.032 68.532 69.532 3.5077 0 0 0 0.38417 1 14814 14814 0 0 1 + 36141 16959 22927 22938 41329 41329 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3362121582031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.798 1 69.306 68.806 69.806 3.5077 0 0 0 0.38417 1 14896 14896 0 0 1 + 36142 16959 22927 22938 41330 41330 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 65.98 1 69.488 68.988 69.988 3.5077 0 0 0 0.38417 1 14952 14952 0 0 1 + 36143 16959 22927 22938 41331 41331 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.144 1 69.652 69.152 70.152 3.5077 0 0 0 0.38417 1 15002 15002 0 0 1 + 36144 16959 22927 22938 41332 41332 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.381 1 69.888 69.388 70.388 3.5077 0 0 0 0.38417 1 15072 15072 0 0 1 + 36145 16959 22927 22938 41333 41333 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.577 1 70.084 69.584 70.584 3.5077 0 0 0 0.38417 1 15132 15132 0 0 1 + 36146 16959 22927 22938 41334 41334 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.743 1 70.251 69.751 70.751 3.5077 0 0 0 0.38417 1 15183 15183 0 0 1 + 36147 16959 22927 22938 41335 41335 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3369140625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.599 1 71.107 70.607 71.607 3.5077 0 0 0 0.38417 1 15443 15443 0 0 1 + 36148 16959 22927 22938 41336 41336 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.732 1 71.24 70.74 71.74 3.5077 0 0 0 0.38417 1 15484 15484 0 0 1 + 36149 16959 22927 22938 41337 41337 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.864 1 71.371 70.871 71.871 3.5077 0 0 0 0.38417 1 15524 15524 0 0 1 + 36150 16959 22927 22938 41338 41338 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3367004394531 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.994 1 71.502 71.002 72.002 3.5077 0 0 0 0.38417 1 15564 15564 0 0 1 + 36151 16959 22927 22938 41339 41339 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.137 1 71.646 71.146 72.146 3.5089 0 0 0 0.38417 1 15605 15605 0 0 1 + 36152 16959 22927 22938 41340 41340 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.351 1 71.861 71.361 72.361 3.5094 0 0 0 0.38417 1 15668 15668 0 0 1 + 36153 16959 22927 22938 41341 41341 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.489 1 71.998 71.498 72.498 3.5094 0 0 0 0.38417 1 15706 15706 0 0 1 + 36154 16959 22927 22938 41342 41342 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.651 1 72.16 71.66 72.66 3.5094 0 0 0 0.38417 1 15756 15756 0 0 1 + 36155 16959 22927 22938 41343 41343 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3372802734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.818 1 72.327 71.827 72.827 3.5094 0 0 0 0.38417 1 15806 15806 0 0 1 + 36156 16959 22927 22938 41344 41344 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 68.982 1 72.491 71.991 72.991 3.5094 0 0 0 0.38417 1 15856 15856 0 0 1 + 36157 16959 22927 22938 41345 41345 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.173 1 72.682 72.182 73.182 3.5094 0 0 0 0.38417 1 15915 15915 0 0 1 + 36158 16959 22927 22938 41346 41346 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.794 1 73.306 72.806 73.806 3.5128 0 0 0 0.38417 1 16104 16104 0 0 1 + 36159 16959 22927 22938 41347 41347 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 69.943 1 73.456 72.956 73.956 3.5128 0 0 0 0.38417 1 16149 16149 0 0 1 + 36160 16959 22927 22938 41348 41348 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.085 1 73.598 73.098 74.098 3.5128 0 0 0 0.38417 1 16193 16193 0 0 1 + 36161 16959 22927 22938 41349 41349 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33709716796875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.212 1 73.725 73.225 74.225 3.5128 0 0 0 0.38417 1 16232 16232 0 0 1 + 36162 16959 22927 22938 41350 41350 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33770751953125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.357 1 73.876 73.376 74.376 3.5185 0 0 0 0.38417 1 16276 16276 0 0 1 + 36163 16959 22927 22938 41351 41351 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33740234375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.493 1 74.011 73.511 74.511 3.5185 0 0 0 0.38417 1 16314 16314 0 0 1 + 36164 16959 22927 22938 41352 41352 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33673095703125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 70.628 1 74.146 73.646 74.646 3.5185 0 0 0 0.38417 1 16351 16351 0 0 1 + 36165 16959 22927 22938 41353 41353 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.533 1 75.06 74.56 75.56 3.5266 0 0 0 0.38417 1 16619 16619 0 0 1 + 36166 16959 22927 22938 41354 41354 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3368835449219 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.657 1 75.184 74.684 75.684 3.5266 0 0 0 0.38417 1 16657 16657 0 0 1 + 36167 16959 22927 22938 41355 41355 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.816 1 75.342 74.842 75.842 3.5266 0 0 0 0.38417 1 16703 16703 0 0 1 + 36168 16959 22927 22938 41356 41356 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3368225097656 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 71.995 1 75.521 75.021 76.021 3.5266 0 0 0 0.38417 1 16755 16755 0 0 1 + 36169 16959 22927 22938 41357 41357 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33685302734375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.133 1 75.66 75.16 76.16 3.5266 0 0 0 0.38417 1 16795 16795 0 0 1 + 36170 16959 22927 22938 41358 41358 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.259 1 75.786 75.286 76.286 3.5266 0 0 0 0.38417 1 16833 16833 0 0 1 + 36171 16959 22927 22938 41359 41359 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.424 1 75.951 75.451 76.451 3.5266 0 0 0 0.38417 1 16880 16880 0 0 1 + 36172 16959 22927 22938 41360 41360 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.578 1 76.116 75.616 76.616 3.5373 0 0 0 0.38417 1 16926 16926 0 0 1 + 36173 16959 22927 22938 41361 41361 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33697509765625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.746 1 76.284 75.784 76.784 3.5373 0 0 0 0.38417 1 16977 16977 0 0 1 + 36174 16959 22927 22938 41362 41362 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.892 1 76.43 75.93 76.93 3.5373 0 0 0 0.38417 1 17023 17023 0 0 1 + 36175 16959 22927 22938 41363 41363 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 72.906 1 76.443 75.943 76.943 3.5373 0 0 0 0.38417 1 17027 17027 0 0 1 + 36176 16959 22927 22938 41364 41364 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 73.023 1 76.56 76.06 77.06 3.5373 0 0 0 0.38417 1 17064 17064 0 0 1 + 36177 16959 22927 22938 41365 41365 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3374328613281 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 73.147 1 76.684 76.184 77.184 3.5373 0 0 0 0.38417 1 17100 17100 0 0 1 + 36178 16959 22927 22938 41366 41366 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 76.732 1 80.315 79.815 80.815 3.5831 0 0 0 0.38417 1 18084 18084 0 0 1 + 36179 16959 22927 22938 41367 41367 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370666503906 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.113 1 81.734 81.234 82.234 3.6216 0 0 0 0.38417 1 18483 18483 0 0 1 + 36180 16959 22927 22938 41368 41368 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.298 1 81.92 81.42 82.42 3.6216 0 0 0 0.38417 1 18532 18532 0 0 1 + 36181 16959 22927 22938 41369 41369 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.439 1 82.061 81.561 82.561 3.6216 0 0 0 0.38417 1 18568 18568 0 0 1 + 36182 16959 22927 22938 41370 41370 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.337158203125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.602 1 82.224 81.724 82.724 3.6216 0 0 0 0.38417 1 18609 18609 0 0 1 + 36183 16959 22927 22938 41371 41371 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 78.882 1 82.503 82.003 83.003 3.6216 0 0 0 0.38417 1 18688 18688 0 0 1 + 36184 16959 22927 22938 41372 41372 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370056152344 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 79.783 1 83.426 82.926 83.926 3.6423 0 0 0 0.38417 1 18923 18923 0 0 1 + 36185 16959 22927 22938 41373 41373 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371276855469 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 80.574 1 84.237 83.737 84.737 3.6635 0 0 0 0.38417 1 19066 19066 0 0 1 + 36186 16959 22927 22938 41374 41374 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 82.757 1 86.464 85.964 86.964 3.7066 0 0 0 0.38417 1 19617 19617 0 0 1 + 36187 16959 22927 22938 41375 41375 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3370361328125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 84.086 1 87.814 87.314 88.314 3.7281 0 0 0 0.38417 1 19950 19950 0 0 1 + 36188 16959 22927 22938 41376 41376 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33734130859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 84.982 1 88.731 88.231 89.231 3.7494 0 0 0 0.38417 1 20158 20158 0 0 1 + 36189 16959 22927 22938 41377 41377 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3373107910156 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 85.133 1 88.882 88.382 89.382 3.7494 0 0 0 0.38417 1 20189 20189 0 0 1 + 36190 16959 22927 22938 41378 41378 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3369445800781 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 87.675 1 91.466 90.966 91.966 3.7905 0 0 0 0.38417 1 20803 20803 0 0 1 + 36191 16959 22927 22938 41379 41379 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33642578125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 111.71 1 115.38 114.88 115.88 3.6614 0 0 0 0.38417 1 26523 26523 0 0 1 + 36192 16959 22927 22938 41380 41380 0.28126550852653054 RKKKRKKRKSV 11 Unmodified _RKKKRKKRKSV_ 0 0 0 REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense REV__AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3377685546875 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 114.99 1 118.63 118.13 119.13 3.6433 0 0 0 0.38417 1 27355 27355 0 0 1 + 36193 16959 22927 22938 41381 41381 0.28126550852653054 RKKKRRCD 8 Unmodified _RKKKRRCD_ 0 0 0 REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|43|3|sense REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|43|3|sense MSMS UPN48_class_I_Rep_3 7 545.326904296875 2 545.324734 1088.63491 NaN NaN NaN NaN NaN NaN NaN 88.529 1 92.339 91.839 92.839 3.8104 0 0 0 0.40753 1 21015 21015 0.6015 0.076735 1 + 36194 26219 22928 22939 41382 41382 0.09414227290676536 RKKKTKDRG 9 Unmodified _RKKKTKDRG_ 0 0 0 REV__L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|16|1|sense REV__L1PA4_dup1404|chr2:148380604-148386123:+|2.436545886176885|0.0705997363976382|5.11|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 558.85107421875 2 558.851638 1115.68872 NaN NaN NaN NaN NaN NaN NaN 90.087 1 93.834 93.334 94.334 3.7471 0 0 0 0.4007 1 21475 21475 0.52476 0 1 + 36195 29607 22929 22940 41383 41383 0.1355072299402309 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 515.3663330078125 2 515.366393 1028.71823 0.32321 0.00016657 0.34708 0.00017887 0.67029 0.00034544 515.3664272946173 108.67 0.17899 108.67 108.52 108.7 0 43 22 3 0 0 0 0.82752 1 26582 26582 0 0 1 5769200 36196 12283 22930 22941 41384 41384 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.3665161132812 2 515.366393 1028.71823 0.38371 0.00019775 0.039208 2.0207E-05 0.42291 0.00021796 515.3663189383866 108.3 0.27951 111.93 111.86 112.14 3.6355 88 27 4 0 0 0 0.82752 1 26594 26594 0 0 1 10842000 36197 12283 22930 22941 41385 41385 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.3665771484375 2 515.366393 1028.71823 0.28267 0.00014568 0.077498 3.994E-05 0.36017 0.00018562 515.3663415905927 108.18 0.43124 111.71 111.46 111.89 3.5333 96 46 3 0 0 0 0.82752 1 26179 26179 0 0 1 21581000 36198 12283 22930 22941 41386 41386 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.3663940429688 2 515.366393 1028.71823 0.34284 0.00017669 0.13765 7.0941E-05 0.48049 0.00024763 515.3663463767643 108.25 0.45649 111.79 111.49 111.94 3.5382 99 50 5 0 0 0 0.82752 2 26469 26469;26522 0 0 1 38213000 36199 12283 22930 22941 41387;41388 41387 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.3665771484375 2 515.366393 1028.71823 0.24642 0.00012699 0.047728 2.4597E-05 0.29414 0.00015159 515.3663265265856 108.26 0.4048 111.89 111.52 111.93 3.6313 88 34 5 0 0 0 0.82752 1 26185 26185 0 0 1 15977000 36200 12283 22930 22941 41389 41389 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.3661499023438 2 515.366393 1028.71823 0.34239 0.00017646 2.2787 0.0011744 2.6211 0.0013508 515.3663119521841 108.02 0.11688 111.69 111.59 111.71 3.6746 25 10 3 0 0 0 0.82752 1 25559 25559 0 0 1 13201000 36201 12283 22930 22941 41390 41390 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.3668212890625 2 515.366393 1028.71823 0.34194 0.00017623 0.14019 7.225E-05 0.48214 0.00024848 515.3663626730502 108.22 0.4333 111.89 111.72 112.15 3.6746 186 49 4 0 0 0 0.82752 1 25735 25735 0 0 1 47188000 36202 12283 22930 22941 41391 41391 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.3665771484375 2 515.366393 1028.71823 0.3386 0.0001745 0.13613 7.0158E-05 0.47474 0.00024466 515.3663485512549 108.24 0.47931 111.92 111.67 112.15 3.6813 103 47 4 0 0 0 0.82752 1 25627 25627 0 0 1 47804000 36203 12283 22930 22941 41392 41392 0.20502287010185682 RKKKTKKI 8 Unmodified _RKKKTKKI_ 0 0 0 L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|50|3|sense MSMS UPN48_class_I_Rep_3 7 515.3665771484375 2 515.366393 1028.71823 NaN NaN NaN NaN NaN NaN NaN 108.07 1 111.75 111.25 112.25 3.6813 0 0 0 0.40798 1 25536 25536 0 0 1 36204 12283 22930 22941 41393 41393 0.20502287010185682 RKKLFTQE 8 Unmodified _RKKLFTQE_ 0 0 0 REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|97|2|sense REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|97|2|sense MSMS UPN47_class_I_Rep_1 2 525.6442260742188 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 97.285 1 101.06 100.56 101.56 3.7767 0 0 0 0.40746 1 24110 24110 0.69038 0 1 + 36205 24993 22931 22942 41394 41394 0.0805713808854307 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 493.35357666015625 2 493.353286 984.692019 0.30334 0.00014965 1.0953 0.00054038 1.3987 0.00069004 493.353809735137 108.8 0.35009 108.8 108.57 108.92 0 51 36 2 0 0 0 0.82752 2 26616 26616;26635 0.79363 0 1 7161500 36206 4940 22932 22943 41395;41396 41395 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 493.3533935546875 2 493.353286 984.692019 0.30356 0.00014976 0.061055 3.0122E-05 0.36462 0.00017988 493.3531954937216 109.13 0.66668 109.13 108.88 109.54 0 99 45 3 0 0 0 0.82752 1 26856 26856 0.79363 0 1 9387500 36207 4940 22932 22943 41397 41397 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.35333251953125 2 493.353286 984.692019 0.27425 0.0001353 0.07235 3.5694E-05 0.3466 0.000171 493.3532029807809 108.19 0.29311 111.82 111.57 111.86 3.6355 43 23 4 0 0 0 0.82752 1 26547 26547 0 0 1 8751300 36208 4940 22932 22943 41398 41398 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.3533020019531 2 493.353286 984.692019 0.27425 0.0001353 0.11778 5.8105E-05 0.39203 0.00019341 493.353222989625 108.31 0.2972 111.94 111.86 112.15 3.6355 92 29 4 0 0 0 0.82752 2 26595 26595;26644 0 0 1 11248000 36209 4940 22932 22943 41399;41400 41399 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.3533935546875 2 493.353286 984.692019 0.46771 0.00023074 0.11274 5.5622E-05 0.58045 0.00028637 493.35323466487887 108.26 0.47075 111.79 111.44 111.91 3.5333 106 51 3 0 0 0 0.82752 2 26190 26190;26273 0 0 1 23015000 36210 4940 22932 22943 41401;41402 41401 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.3536071777344 2 493.353286 984.692019 0.46755 0.00023067 0.20743 0.00010234 0.67499 0.00033301 493.3532875933831 108.43 0.17351 111.96 111.91 112.08 3.5333 43 18 4 0 0 0 0.82752 1 26318 26318 0 0 1 13730000 36211 4940 22932 22943 41403 41403 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 493.7865905761719 2 493.353286 984.692019 0.46706 0.00023042 1.2362 0.00060988 1.7033 0.00084031 493.35281692167416 108.97 0.23741 112.51 112.45 112.69 3.5333 55 29 3 0 0 0 0.72333 1 26551 26551 0 0 1 3523700 36212 4940 22932 22943 41404 41404 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.3534851074219 2 493.353286 984.692019 0.27199 0.00013419 0.32173 0.00015873 0.59372 0.00029291 493.353368433589 108.12 0.22168 111.66 111.48 111.7 3.5382 41 26 2 0 0 0 0.82752 1 26414 26414 0 0 1 7899800 36213 4940 22932 22943 41405 41405 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.3534240722656 2 493.353286 984.692019 0.27225 0.00013432 0.36865 0.00018187 0.6409 0.00031619 493.35334595498495 108.25 0.25812 111.79 111.63 111.89 3.5382 61 26 4 0 0 0 0.82752 1 26507 26507 0 0 1 39179000 36214 4940 22932 22943 41406 41406 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.3534851074219 2 493.353286 984.692019 0.27215 0.00013427 0.50556 0.00024942 0.77771 0.00038368 493.3532503888722 108.51 0.13013 112.05 111.94 112.07 3.5382 25 12 3 0 0 0 0.82752 1 26556 26556 0 0 1 4862700 36215 4940 22932 22943 41407 41407 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 493.78668212890625 2 493.353286 984.692019 0.27181 0.0001341 1.6079 0.00079328 1.8797 0.00092738 493.3541157618826 108.66 0.15853 112.2 112.14 112.3 3.5382 21 16 2 0 0 0 0.72333 1 26654 26654 0 0 1 4210600 36216 4940 22932 22943 41408 41408 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 493.35394287109375 2 493.353286 984.692019 0.27133 0.00013386 0.38567 0.00019027 0.657 0.00032414 493.35333327194746 108.77 0.63416 112.45 112.2 112.83 3.6746 83 66 2 0 0 0 0.82752 2 25808 25808;25905 0 0 1 8707900 36217 4940 22932 22943 41409;41410 41409 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MSMS UPN48_class_I_Rep_2 6 493.35345458984375 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 107.92 1 111.59 111.09 112.09 3.6746 0 0 0 0.40798 1 25548 25548 0 0 1 36218 4940 22932 22943 41411 41411 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 493.3642272949219 2 493.353286 984.692019 0.27139 0.00013389 0.56801 0.00028023 0.8394 0.00041412 493.3534812214438 107.86 0.28661 111.53 111.3 111.59 3.6783 32 31 2 0 0 0 0.72333 1 25474 25474 0 0 1 3030900 36219 4940 22932 22943 41412 41412 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 493.3539123535156 2 493.353286 984.692019 0.24644 0.00012158 0.47209 0.00023291 0.71853 0.00035449 493.3534895852683 107.86 0.25981 111.54 111.33 111.59 3.6813 42 26 2 0 0 0 0.82752 1 25464 25464 0 0 1 3136200 36220 4940 22932 22943 41413 41413 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 493.353515625 2 493.353286 984.692019 0.24661 0.00012167 0.31645 0.00015612 0.56306 0.00027779 493.3533525041169 108.23 0.3933 111.92 111.67 112.06 3.6813 93 41 3 0 0 0 0.82752 2 25551 25551;25643 0 0 1 52624000 36221 4940 22932 22943 41414;41415 41414 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 493.8559265136719 2 493.353286 984.692019 0.24642 0.00012157 0.85397 0.00042131 1.1004 0.00054288 493.3536394548393 108.4 0.17348 112.08 112.05 112.23 3.6751 26 15 2 0 0 0 0.82752 1 25682 25682 0 0 1 13107000 36222 4940 22932 22943 41416 41416 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 493.85601806640625 2 493.353286 984.692019 0.24643 0.00012158 1.0393 0.00051272 1.2857 0.0006343 493.3538036353394 108.69 0.53351 112.36 112.23 112.77 3.6751 85 60 2 0 0 0 0.82752 1 25720 25720 0 0 1 9312800 36223 4940 22932 22943 41417 41417 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 493.353286 984.692019 0.16444 8.1126E-05 0.41477 0.00020463 0.5792 0.00028575 493.3534202804287 108.41 0.23286 112.04 111.91 112.14 3.6313 0.027416 0.00013959 NaN 0 42 19 4 NaN NaN NaN NaN 0 NaN NaN 0 7111100 36224 4940 22932 22943 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 493.353286 984.692019 0.27172 0.00013405 0.41475 0.00020462 0.68647 0.00033867 493.3533466490968 108.02 0.11688 111.69 111.59 111.71 3.6746 0.062259 4.8957E-05 NaN 0 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 8981900 36225 4940 22932 22943 0.19906017838707157 RKKLKKKG 8 Unmodified _RKKLKKKG_ 0 0 0 ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;ENST00000539576.5_1_12:123465834-123466670:+|nuORF;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4 ENST00000442210.2_1_12:123465790-123467130:+|nuORF ENST00000442210.2_1_12:123465790-123467130:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 493.353286 984.692019 0.24671 0.00012171 0.48259 0.00023809 0.7293 0.0003598 493.35336834220556 107.95 0.06015 111.63 111.6 111.66 3.6813 -0.081723 0.00027423 NaN 0 21 7 3 NaN NaN NaN NaN 0 NaN NaN 0 4148600 36226 4940 22932 22943 0.19906017838707157 RKKLKKKLC 9 Unmodified _RKKLKKKLC_ 0 0 0 REV__ENST00000282382.8_2_5:114916706-114916865:-|nuORF REV__ENST00000282382.8_2_5:114916706-114916865:-|nuORF MSMS UPN46_class_I_Rep_3 1 572.9954223632812 2 572.889178 1143.7638 NaN NaN NaN NaN NaN NaN NaN 37.163 1 37.163 36.663 37.663 0 0 0 0 0.4029 1 6959 6959 0 0 1 + 36227 21628 22933 22944 41418 41418 0.19767189200911162 RKKLKTLKT 9 Unmodified _RKKLKTLKT_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 558.3849487304688 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 25.615 1 25.615 25.115 26.115 0 0 0 0 0.4029 1 3540 3540 0 0 1 + 36228 28189 22934 22945 41419 41419 0.2022253883610574 RKKLKTLKT 9 Unmodified _RKKLKTLKT_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 558.385009765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 27.293 1 27.293 26.793 27.793 0 0 0 0 0.4029 1 4033 4033 0 0 1 + 36229 28189 22934 22945 41420 41420 0.2022253883610574 RKKLKTLKT 9 Unmodified _RKKLKTLKT_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 558.3849487304688 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 28.601 1 28.601 28.101 29.101 0 0 0 0 0.4029 1 4413 4413 0 0 1 + 36230 28189 22934 22945 41421 41421 0.2022253883610574 RKKLKTLKT 9 Unmodified _RKKLKTLKT_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 558.3848876953125 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 116.88 1 116.88 116.38 117.38 0 0 0 0 0.4029 1 28948 28948 0 0 1 + 36231 28189 22934 22945 41422 41422 0.2022253883610574 RKKLKTLKT 9 Unmodified _RKKLKTLKT_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 558.3851928710938 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 97.445 1 101.22 100.72 101.72 3.779 0 0 0 0.4029 1 23155 23155 0 0 1 + 36232 28189 22934 22945 41423 41423 0.2022253883610574 RKKLKTLKT 9 Unmodified _RKKLKTLKT_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 558.7755126953125 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.87 1 115.53 115.03 116.03 3.6614 0 0 0 0.4029 1 26561 26561 0 0 1 + 36233 28189 22934 22945 41424 41424 0.2022253883610574 RKKLMPKL 8 Unmodified _RKKLMPKL_ 0 0 0 REV__nc|ENSG00000070214|Q8WWI5-2|SLC44A1 REV__nc|ENSG00000070214|Q8WWI5-2|SLC44A1 MULTI-SECPEP UPN48_class_I_Rep_1 5 506.8350524902344 2 507.336247 1012.65794 0.24614 0.00012488 0.45546 0.00023107 0.70161 0.00035595 507.3364893972431 53.819 0.34791 57.333 57.107 57.455 3.5143 38 23 2 0 0 0 0.72333 1 11360 11360 2.3027 0 1 275130 + 36234 31940 22935 22946 41425 41425 0.15211853355447147 RKKLQLSL 8 Unmodified _RKKLQLSL_ 0 0 0 ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF ENSG00000100029|ENST00000354694|PES1 ENSG00000100029|ENST00000354694|PES1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.33056640625 2 493.329476 984.6444 -0.32586 -0.00016076 0.15299 7.5474E-05 -0.17287 -8.5282E-05 493.3294878421377 20.945 0.74136 24.589 24.252 24.994 3.6436 140 80 2 0 0 0 0.82752 1 2253 2253 8.5933 0 1 143820 36235 1465 22936 22947 41426 41426 0.1514631884786013 RKKLQLSL 8 Unmodified _RKKLQLSL_ 0 0 0 ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF ENSG00000100029|ENST00000354694|PES1 ENSG00000100029|ENST00000354694|PES1 MSMS UPN47_class_I_Rep_1 2 493.3294982910156 2 493.329476 984.6444 NaN NaN NaN NaN NaN NaN NaN 21.333 1 24.976 24.476 25.476 3.6436 0 0 0 0.39819 1 2297 2297 8.5933 0 1 36236 1465 22936 22947 41427 41427 0.1514631884786013 RKKMKTLGQ 9 Unmodified _RKKMKTLGQ_ 0 0 0 L1MCc_dup2282|chr10:75552103-75553551:-|2.1861830994406533|0.0097097428645002|7.81|149.0|5|1|sense L1MCc_dup2282|chr10:75552103-75553551:-|2.1861830994406533|0.0097097428645002|7.81|149.0|5|1|sense L1MCc_dup2282|chr10:75552103-75553551:-|2.1861830994406533|0.0097097428645002|7.81|149.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 544.8251953125 2 545.331693 1088.64883 0.43641 0.00023799 -3.403 -0.0018558 -2.9666 -0.0016178 545.8323691134628 89.362 0.17474 92.987 92.916 93.091 3.6255 33 19 3 0 0 0 0.12444 1 21440 21440 2.0598 0 1 109130 36237 11862 22937 22948 41428 41428 0.10805459999096456 RKKPALAAP 9 Unmodified _RKKPALAAP_ 0 0 0 REV__Tigger1_dup1981|chr2:232823788-232825718:+|2.02757846692826|0.0849822703391717|4.58|150.0|91|2|anti-sense REV__Tigger1_dup1981|chr2:232823788-232825718:+|2.02757846692826|0.0849822703391717|4.58|150.0|91|2|anti-sense MSMS UPN47_class_I_Rep_1 2 476.3065185546875 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 70.206 1 73.577 73.077 74.077 3.3713 0 0 0 0.39428 1 17050 17050 2.0598 1.2661 1 + 36238 32388 22938 22949 41429 41429 0.12525763159305825 RKKPALIAPLK 11 Unmodified _RKKPALIAPLK_ 0 0 0 REV__Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|99|1|anti-sense REV__Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|99|1|anti-sense MSMS UPN46_class_I_Rep_3 1 617.9224243164062 2 617.921532 1233.82851 NaN NaN NaN NaN NaN NaN NaN 97.08 1 97.08 96.58 97.58 0 0 0 0 0.38417 1 23611 23611 0.30703 0 1 + 36239 32337 22939 22950 41430 41430 0.22095087278535175 RKKPLLLNI 9 Unmodified _RKKPLLLNI_ 0 0 0 L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|84|2|anti-sense L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|84|2|anti-sense L1PA15_dup213|chr1:110910628-110912194:+|5.79630355802666|0.0281372641868106|7.69|151.0|84|2|anti-sense MSMS UPN46_class_I_Rep_3 1 547.8759765625 2 547.874051 1093.73355 NaN NaN NaN NaN NaN NaN NaN 61.998 1 61.998 61.498 62.498 0 0 0 0 0.4007 1 13837 13837 0.52476 0.52476 1 36240 13894 22940 22951 41431 41431 0.19043153807365343 RKKQILVMS 9 Unmodified _RKKQILVMS_ 0 0 0 REV__L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|27|1|sense REV__L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|27|1|sense MSMS UPN48_class_I_Rep_3 7 551.8436279296875 2 551.841894 1101.66923 NaN NaN NaN NaN NaN NaN NaN 76.541 1 80.124 79.624 80.624 3.5831 0 0 0 0.4007 1 18028 18028 0.52476 0 1 + 36241 29617 22941 22952 41432 41432 0.122466306589331 RKKQPHQKVC 10 Unmodified _RKKQPHQKVC_ 0 0 0 L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|106|2|sense;L1PA7_dup7197|chr9:14599777-14602159:+|1.7236013421217269|0.240684255869607|2.84|151.0|66|3|sense L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|106|2|sense L1PA4_dup8313|chr10:32482499-32488633:-|2.720909711629291|0.3166355036143646|3.1|151.0|106|2|sense MSMS UPN48_class_I_Rep_2 6 626.3796997070312 2 626.358773 1250.70299 NaN NaN NaN NaN NaN NaN NaN 98.824 1 102.59 102.09 103.09 3.7707 0 0 0 0.53105 1 23475 23475 1.4819 0 1 36242 14394 22942 22953 41433 41433 0.08767052150665222 RKKQQNSDN 9 Unmodified _RKKQQNSDN_ 0 0 0 REV__L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|103|3|sense REV__L1PA5_dup1714|chr3:15480182-15484403:-|1.1210908752339648|0.1777186087150058|2.66|151.0|103|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.2890625 2 559.289068 1116.56358 -0.10797 -6.0384E-05 -0.42171 -0.00023586 -0.52968 -0.00029624 559.2888770076678 14.994 0.33149 18.469 18.303 18.634 3.475 61 37 2 0 0 0 0.50088 1 713 713 0.52476 0 1 39174 + 36243 29717 22943 22954 41434 41434 0.009963860670040958 RKKQRLQY 8 Unmodified _RKKQRLQY_ 0 0 0 REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|46|3|sense REV__L1ME1_dup5604|chr3:32418122-32419800:-|1.054272705697208|0.011847889615122|6.48|150.0|46|3|sense MSMS UPN46_class_I_Rep_3 1 560.3402709960938 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 97.093 1 97.093 96.593 97.593 0 0 0 0 0.40746 1 23615 23615 0.69038 0 1 + 36244 27780 22944 22955 41435 41435 0.11267337965318802 RKKRCHRI 8 Unmodified _RKKRCHRI_ 0 0 0 REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|33|2|sense REV__L1MC2_dup483|chr2:24713551-24715452:+|2.619018194383275|0.0762925530300031|5.1|151.0|33|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8360595703125 2 548.835269 1095.65598 0.015186 8.3346E-06 -0.57075 -0.00031325 -0.55557 -0.00030492 548.834860497774 24.593 0.18133 24.593 24.521 24.702 0 27 19 2 0 0 0 0.82752 1 3268 3268 0.69038 0 1 69857 + 36245 26680 22945 22956 41436 41436 0.1119823739018102 RKKRIKKWA 9 Unmodified _RKKRIKKWA_ 0 0 0 L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 405.27337646484375 3 405.271653 1212.79313 NaN NaN NaN NaN NaN NaN NaN 57.734 1 57.734 57.234 58.234 0 0 0 0 0.40177 1 12668 12668 0.26902 0.033176 1 36246 13826 22946 22957 41437 41437 0.19524469541397593 RKKRIKKWA 9 Unmodified _RKKRIKKWA_ 0 0 0 L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 405.2732849121094 3 405.271653 1212.79313 NaN NaN NaN NaN NaN NaN NaN 48.58 1 52.262 51.762 52.762 3.6819 0 0 0 0.40177 1 10492 10492 0.26902 0.1097 1 36247 13826 22946 22957 41438 41438 0.19524469541397593 RKKRIKKWA 9 Unmodified _RKKRIKKWA_ 0 0 0 L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 405.2734375 3 405.271653 1212.79313 NaN NaN NaN NaN NaN NaN NaN 51.59 1 55.183 54.683 55.683 3.5932 0 0 0 0.40177 1 11413 11413 0.26902 0.1097 1 36248 13826 22946 22957 41439 41439 0.19524469541397593 RKKRIKKWA 9 Unmodified _RKKRIKKWA_ 0 0 0 L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense L1PA14_dup2197|chr10:20049135-20051395:+|2.8515431731834604|0.0797688058643215|5.16|149.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 405.2731018066406 3 405.271653 1212.79313 NaN NaN NaN NaN NaN NaN NaN 55.553 1 59.032 58.532 59.532 3.4785 0 0 0 0.40177 1 12618 12618 0.26902 0.1097 1 36249 13826 22946 22957 41440 41440 0.19524469541397593 RKKRKRKKNKS 11 Unmodified _RKKRKRKKNKS_ 0 0 0 GPATCH8|p.G737Wfs*17|1|0.1|ENSG00000186566|chr17:44399869-44399870|-/G|frameshift_variant;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8 GPATCH8|p.G737Wfs*17|1|0.1|ENSG00000186566|chr17:44399869-44399870|-/G|frameshift_variant GPATCH8|p.G737Wfs*17|1|0.1|ENSG00000186566|chr17:44399869-44399870|-/G|frameshift_variant MSMS UPN48_class_I_Rep_2 6 486.0804748535156 3 486.32682 1455.95863 NaN NaN NaN NaN NaN NaN NaN 98.861 1 102.63 102.13 103.13 3.7707 0 0 0 0.38417 1 23484 23484 0.094841 0 1 36250 5158 22947 22958 41441 41441 0.2488907633025974 RKKRLEEQR 9 Unmodified _RKKRLEEQR_ 0 0 0 nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7 nc|ENSG00000135525|Q14244-2|MAP7 nc|ENSG00000135525|Q14244-2|MAP7 MSMS UPN46_class_I_Rep_3 1 621.8717041015625 2 621.873102 1241.73165 NaN NaN NaN NaN NaN NaN NaN 22.407 1 22.407 21.907 22.907 0 0 0 0 0.4007 1 2654 2654 0.52476 0 1 36251 2917 22948 22959 41442 41442 0.12045493051459744 RKKRRGQG 8 Unmodified _RKKRRGQG_ 0 0 0 ENST00000542570.5_2_17:18212223-18218150:-|nuORF;ENST00000584582.5_1_17:18210215-18218150:-|nuORF ENST00000542570.5_2_17:18212223-18218150:-|nuORF ENST00000542570.5_2_17:18212223-18218150:-|nuORF MSMS UPN46_class_I_Rep_3 1 493.3106689453125 2 493.309941 984.605329 NaN NaN NaN NaN NaN NaN NaN 106.21 1 106.21 105.71 106.71 0 0 0 0 0.40746 1 25901 25901 0.69038 0 1 36252 7360 22949 22960 41443 41443 0.11241031336851393 RKKRRKKIENI 11 Unmodified _RKKRRKKIENI_ 0 0 0 MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|107|1|anti-sense MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|107|1|anti-sense MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|107|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7814636230469 3 490.323076 1467.9474 NaN NaN NaN NaN NaN NaN NaN 59.611 1 62.776 62.276 63.276 3.1651 0 0 0 0.38417 1 13939 13939 0.094841 0 1 36253 15949 22950 22961 41444 41444 0.23214254236131637 RKKRRKRRPQN 11 Unmodified _RKKRRKRRPQN_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|182|3|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|182|3|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|182|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 508.3260498046875 3 508.325702 1521.95528 0.31332 0.00015927 0.096107 4.8854E-05 0.40943 0.00020812 508.66022493328796 105.75 0.10844 109.44 109.36 109.47 3.6834 16 13 2 0 0 0 0.68583 1 25018 25018 0 0 1 683250 36254 9422 22951 22962 41445 41445 0.2151782627627199 RKKRRKRRPQN 11 Unmodified _RKKRRKRRPQN_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|182|3|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|182|3|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|182|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 508.325702 1521.95528 0.21937 0.00011151 0.84689 0.0004305 1.0663 0.00054201 508.6601257638699 105.88 0.023079 109.5 109.49 109.51 3.6277 0.033027 0.00085212 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 48587 36255 9422 22951 22962 0.2151782627627199 RKKRRRRN 8 Unmodified _RKKRRRRN_ 0 0 0 ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653 ENST00000590548.5_1_19:11597897-11616622:-|nuORF ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS UPN46_class_I_Rep_3 1 585.6957397460938 2 585.381763 1168.74897 NaN NaN NaN NaN NaN NaN NaN 116.74 1 116.74 116.24 117.24 0 0 0 0 0.40746 1 28910 28910 0.69038 0 1 36256 3908 22952 22963 41446 41446 0.17134878167803436 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3057556152344 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 65.731 1 65.731 65.231 66.231 0 0 0 0 0.53105 1 14871 14871 0.13989 0.04505 1 36257 5167 22953 22964 41447 41447 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3062744140625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 70.071 1 70.071 69.571 70.571 0 0 0 0 0.53105 1 16085 16085 0.13989 0.04505 1 36258 5167 22953 22964 41448 41448 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30645751953125 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 70.6 1 70.6 70.1 71.1 0 0 0 0 0.53105 1 16232 16232 0.13989 0.04505 1 36259 5167 22953 22964 41449 41449 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30609130859375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 77.836 1 77.836 77.336 78.336 0 0 0 0 0.53105 1 18209 18209 0.13989 0.04505 1 36260 5167 22953 22964 41450 41450 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30609130859375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 77.991 1 77.991 77.491 78.491 0 0 0 0 0.53105 1 18249 18249 0.13989 0.04505 1 36261 5167 22953 22964 41451 41451 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30621337890625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 81.711 1 81.711 81.211 82.211 0 0 0 0 0.53105 1 19313 19313 0.13989 0.04505 1 36262 5167 22953 22964 41452 41452 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3062438964844 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 82.917 1 82.917 82.417 83.417 0 0 0 0 0.53105 1 19665 19665 0.13989 0.04505 1 36263 5167 22953 22964 41453 41453 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30755615234375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 92.222 1 92.222 91.722 92.722 0 0 0 0 0.53105 1 22309 22309 0.13989 0.04505 1 36264 5167 22953 22964 41454 41454 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.306884765625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 97.485 1 97.485 96.985 97.985 0 0 0 0 0.53105 1 23721 23721 0.13989 0.04505 1 36265 5167 22953 22964 41455 41455 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3070373535156 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 110.98 1 110.98 110.48 111.48 0 0 0 0 0.53105 1 27348 27348 0.13989 0.04505 1 36266 5167 22953 22964 41456 41456 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.306884765625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 111.89 1 111.89 111.39 112.39 0 0 0 0 0.53105 1 27604 27604 0.69767 0.60282 1 36267 5167 22953 22964 41457 41457 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30645751953125 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 112.76 1 112.76 112.26 113.26 0 0 0 0 0.53105 1 27842 27842 0.13989 0.04505 1 36268 5167 22953 22964 41458 41458 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30706787109375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 112.85 1 112.85 112.35 113.35 0 0 0 0 0.53105 1 27866 27866 0.69767 0.53834 1 36269 5167 22953 22964 41459 41459 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3059997558594 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 113.82 1 113.82 113.32 114.32 0 0 0 0 0.53105 1 28116 28116 0.69767 0.60282 1 36270 5167 22953 22964 41460 41460 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.305908203125 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 114 1 114 113.5 114.5 0 0 0 0 0.53105 1 28164 28164 0.69767 0.60282 1 36271 5167 22953 22964 41461 41461 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30621337890625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 115.39 1 115.39 114.89 115.89 0 0 0 0 0.53105 1 28540 28540 0.69767 0.60282 1 36272 5167 22953 22964 41462 41462 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3059997558594 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 116.63 1 116.63 116.13 117.13 0 0 0 0 0.53105 1 28878 28878 0.13989 0.04505 1 36273 5167 22953 22964 41463 41463 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.306884765625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 116.7 1 116.7 116.2 117.2 0 0 0 0 0.53105 1 28901 28901 0.69767 0.19171 1 36274 5167 22953 22964 41464 41464 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30584716796875 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 116.77 1 116.77 116.27 117.27 0 0 0 0 0.53105 1 28919 28919 0.13989 0.04505 1 36275 5167 22953 22964 41465 41465 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3060302734375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 117.55 1 117.55 117.05 118.05 0 0 0 0 0.53105 1 29141 29141 0.13989 0.04505 1 36276 5167 22953 22964 41466 41466 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30657958984375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 117.58 1 117.58 117.08 118.08 0 0 0 0 0.53105 1 29152 29152 0.13989 0.04505 1 36277 5167 22953 22964 41467 41467 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3061828613281 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 117.93 1 117.93 117.43 118.43 0 0 0 0 0.53105 1 29250 29250 0.13989 0.04505 1 36278 5167 22953 22964 41468 41468 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3061218261719 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 118.63 1 118.63 118.13 119.13 0 0 0 0 0.53105 1 29454 29454 0.69767 0.60282 1 36279 5167 22953 22964 41469 41469 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30615234375 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 118.65 1 118.65 118.15 119.15 0 0 0 0 0.53105 1 29461 29461 0.13989 0.04505 1 36280 5167 22953 22964 41470 41470 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30621337890625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 118.78 1 118.78 118.28 119.28 0 0 0 0 0.53105 1 29497 29497 0.69767 0.19171 1 36281 5167 22953 22964 41471 41471 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.306640625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 118.89 1 118.89 118.39 119.39 0 0 0 0 0.53105 1 29529 29529 0.13989 0.04505 1 36282 5167 22953 22964 41472 41472 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3077087402344 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 119.02 1 119.02 118.52 119.52 0 0 0 0 0.53105 1 29567 29567 0.69767 0.60282 1 36283 5167 22953 22964 41473 41473 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3056335449219 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 119.35 1 119.35 118.85 119.85 0 0 0 0 0.53105 1 29661 29661 0.69767 0.60282 1 36284 5167 22953 22964 41474 41474 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.306640625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 119.52 1 119.52 119.02 120.02 0 0 0 0 0.53105 1 29709 29709 0.13989 0.04505 1 36285 5167 22953 22964 41475 41475 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3069763183594 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 119.59 1 119.59 119.09 120.09 0 0 0 0 0.53105 1 29729 29729 0.69767 0.60282 1 36286 5167 22953 22964 41476 41476 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.30633544921875 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 119.64 1 119.64 119.14 120.14 0 0 0 0 0.53105 1 29745 29745 0.69767 0.24315 1 36287 5167 22953 22964 41477 41477 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN47_class_I_Rep_1 2 476.2643127441406 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 115.08 1 118.66 118.16 119.16 3.5809 0 0 0 0.53105 1 28459 28459 0.13989 0.04505 1 36288 5167 22953 22964 41478 41478 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN47_class_I_Rep_3 4 476.3066101074219 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 64.061 1 67.235 66.735 67.735 3.1741 0 0 0 0.53105 1 15295 15295 0.13989 0.04505 1 36289 5167 22953 22964 41479 41479 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN47_class_I_Rep_3 4 476.30645751953125 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.24 114.74 115.74 3.5207 0 0 0 0.53105 1 27433 27433 0.69767 0.5748 1 36290 5167 22953 22964 41480 41480 0.20184984070669998 RKKRRRSQRR 10 Unmodified _RKKRRRSQRR_ 0 0 0 nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN47_class_I_Rep_3 4 476.30645751953125 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 115.92 1 119.39 118.89 119.89 3.462 0 0 0 0.53105 1 28518 28518 0.69767 0.19171 1 36291 5167 22953 22964 41481 41481 0.20184984070669998 RKKRVGSVP 9 Unmodified _RKKRVGSVP_ 0 0 0 ENST00000393802.6_1_5:171326080-171326947:-|nuORF ENST00000393802.6_1_5:171326080-171326947:-|nuORF ENST00000393802.6_1_5:171326080-171326947:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.8135986328125 2 513.830175 1025.6458 NaN NaN NaN NaN NaN NaN NaN 61.328 1 61.328 60.828 61.828 0 0 0 0 0.39428 1 13640 13640 2.0598 0 1 36292 6538 22954 22965 41482 41482 0.13399952936606496 RKKSAHHH 8 Unmodified _RKKSAHHH_ 0 0 0 REV__L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|61|3|sense REV__L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|61|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 500.7798156738281 2 500.781016 999.54748 0.2512 0.0001258 -2.388 -0.0011959 -2.1368 -0.0010701 500.77995153272445 32.691 0.025509 36.217 36.2 36.225 3.5266 4 2 2 0 0 0 0.82752 1 5001 5001 0.79363 0.10326 1 34350 + 36293 26731 22955 22966 41483 41483 0.04768769411418816 RKKSGGLR 8 Unmodified _RKKSGGLR_ 0 0 0 ENST00000471538.1_1_1:16200631-16200724:+|nuORF ENST00000471538.1_1_1:16200631-16200724:+|nuORF ENST00000471538.1_1_1:16200631-16200724:+|nuORF MSMS UPN47_class_I_Rep_2 3 451.28955078125 2 451.288143 900.561733 NaN NaN NaN NaN NaN NaN NaN 98.072 1 101.56 101.06 102.06 3.4836 0 0 0 0.40746 1 24055 24055 0.69038 0 1 36294 6927 22956 22967 41484 41484 0.10747421839721483 RKKSSLLFKT 10 Unmodified _RKKSSLLFKT_ 0 0 0 HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|64|2|anti-sense HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|64|2|anti-sense HERV4_I-int_dup323|chr20:60285673-60286726:+|1.2343070411986587|0.2625173885715475|2.23|150.0|64|2|anti-sense MSMS UPN47_class_I_Rep_1 2 604.8690185546875 2 604.379697 1206.74484 NaN NaN NaN NaN NaN NaN NaN 99.118 1 102.91 102.41 103.41 3.7926 0 0 0 0.53105 1 24521 24521 1.4819 0 1 36295 8062 22957 22968 41485 41485 0.149739311108533 RKKTPYSL 8 Unmodified _RKKTPYSL_ 0 0 0 L1MB7_dup9530|chr8:17300604-17301043:-|1.2971277543585338|0.2373832287554423|2.45|151.0|24|2|anti-sense L1MB7_dup9530|chr8:17300604-17301043:-|1.2971277543585338|0.2373832287554423|2.45|151.0|24|2|anti-sense L1MB7_dup9530|chr8:17300604-17301043:-|1.2971277543585338|0.2373832287554423|2.45|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 496.83251953125 2 496.798009 991.581465 NaN NaN NaN NaN NaN NaN NaN 72.399 1 75.779 75.279 76.279 3.3799 0 0 0 0.40746 1 17713 17713 0.69038 0 1 36296 10887 22958 22969 41486 41486 0.0853375305979398 RKKTYLFA 8 Unmodified _RKKTYLFA_ 0 0 0 REV__L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|41|1|sense REV__L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|41|1|sense MSMS UPN48_class_I_Rep_3 7 513.806396484375 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 113.72 1 117.38 116.88 117.88 3.6568 0 0 0 0.40738 1 27048 27048 0.79363 0 1 + 36297 29516 22959 22970 41487 41487 0.0904234343945518 RKKWMIWI 8 Unmodified _RKKWMIWI_ 0 0 0 ENST00000371142.8_1_10:98311155-98312722:-|nuORF ENST00000371142.8_1_10:98311155-98312722:-|nuORF ENST00000371142.8_1_10:98311155-98312722:-|nuORF MSMS UPN46_class_I_Rep_3 1 580.590576171875 2 580.841697 1159.66884 NaN NaN NaN NaN NaN NaN NaN 39.037 1 39.037 38.537 39.537 0 0 0 0 0.40746 1 7477 7477 0.69038 0 1 36298 6388 22960 22971 41488 41488 0.09539255729714569 RKKWWQWRRRK 11 Unmodified _RKKWWQWRRRK_ 0 0 0 REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF MSMS UPN46_class_I_Rep_3 1 571.8153076171875 3 572.006081 1712.99641 NaN NaN NaN NaN NaN NaN NaN 42.365 1 42.365 41.865 42.865 0 0 0 0 0.38417 1 8381 8381 0 0 1 + 36299 21756 22961 22972 41489 41489 0.16843587315679542 RKLAHFRY 8 Unmodified _RKLAHFRY_ 0 0 0 ENST00000466609.1_1_3:98377983-98378526:+|nuORF ENST00000466609.1_1_3:98377983-98378526:+|nuORF ENST00000466609.1_1_3:98377983-98378526:+|nuORF MSMS UPN47_class_I_Rep_1 2 545.8189697265625 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 93.506 1 97.242 96.742 97.742 3.736 0 0 0 0.40746 1 23258 23258 0.69038 0 1 36300 6902 22962 22973 41490 41490 0.07835683765142676 RKLCMHRG 8 Unmodified _RKLCMHRG_ 0 0 0 REV__ENST00000557411.5_3_14:81382850-81405808:-|nuORF REV__ENST00000557411.5_3_14:81382850-81405808:-|nuORF MSMS UPN47_class_I_Rep_3 4 500.7977294921875 2 500.768206 999.521858 NaN NaN NaN NaN NaN NaN NaN 35.061 1 38.325 37.825 38.825 3.2639 0 0 0 0.40625 1 6448 6448 2.3027 0 1 + 36301 21621 22963 22974 41491 41491 0.022078355731309784 RKLEEPVL 8 Unmodified _RKLEEPVL_ 0 0 0 ENSG00000074657|ENST00000591808|ZNF532;ENST00000590442.1_1_18:56648660-56651695:+|nuORF;ENST00000592249.5_1_18:56620439-56651695:+|nuORF ENSG00000074657|ENST00000591808|ZNF532 ENSG00000074657|ENST00000591808|ZNF532 MSMS UPN48_class_I_Rep_3 7 492.2976379394531 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 64.032 1 67.541 67.041 68.041 3.5083 0 0 0 0.40604 1 14364 14364 2.5775 0.51773 1 36302 1131 22964 22975 41492 41492 0.08914333339953373 RKLELDEL 8 Unmodified _RKLELDEL_ 0 0 0 REV__nc|ENSG00000154001|Q16537-3|PPP2R5E REV__nc|ENSG00000154001|Q16537-3|PPP2R5E MULTI-MSMS UPN47_class_I_Rep_1 2 508.2930908203125 2 508.292756 1014.57096 -0.052478 -2.6674E-05 0.073526 3.7373E-05 0.021048 1.0698E-05 508.2926418692445 45.195 1.0975 48.894 48.522 49.62 3.6999 124 62 3 0 0 0 0.82752 2 9563 9563;9618 13.042 0 1 181660 + 36303 19726 22965 22976 41493;41494 41493 0.06425725614712974 RKLFELKEEIR 11 Unmodified _RKLFELKEEIR_ 0 0 0 Charlie1a_dup2687|chr7:151512770-151513766:+|2.4886109110501247|0.0488218021885165|5.67|151.0|9|1|sense Charlie1a_dup2687|chr7:151512770-151513766:+|2.4886109110501247|0.0488218021885165|5.67|151.0|9|1|sense Charlie1a_dup2687|chr7:151512770-151513766:+|2.4886109110501247|0.0488218021885165|5.67|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 487.2132873535156 3 487.624309 1459.8511 0.20006 9.7553E-05 0.87071 0.00042458 1.0708 0.00052213 487.62479003816776 56.61 0.084259 56.61 56.579 56.664 0 21 9 3 0 0 0 22.551 1 12369 12369 0.50596 0 1 330350 36304 467 22966 22977 41495 41495 0.1395664188551109 RKLFKKIIRRK 11 Unmodified _RKLFKKIIRRK_ 0 0 0 Tigger1_dup10672|chr16:75355934-75356903:-|1.5667298729252923|0.0247126960956976|5.99|151.0|40|1|anti-sense Tigger1_dup10672|chr16:75355934-75356903:-|1.5667298729252923|0.0247126960956976|5.99|151.0|40|1|anti-sense Tigger1_dup10672|chr16:75355934-75356903:-|1.5667298729252923|0.0247126960956976|5.99|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_3 4 496.2956237792969 3 496.012062 1485.01436 NaN NaN NaN NaN NaN NaN NaN 115.45 1 118.93 118.43 119.43 3.4802 0 0 0 0.38417 1 28389 28389 0 0 1 36305 32997 22967 22978 41496 41496 0.2912490951782729 RKLFKKIIRRK 11 Unmodified _RKLFKKIIRRK_ 0 0 0 Tigger1_dup10672|chr16:75355934-75356903:-|1.5667298729252923|0.0247126960956976|5.99|151.0|40|1|anti-sense Tigger1_dup10672|chr16:75355934-75356903:-|1.5667298729252923|0.0247126960956976|5.99|151.0|40|1|anti-sense Tigger1_dup10672|chr16:75355934-75356903:-|1.5667298729252923|0.0247126960956976|5.99|151.0|40|1|anti-sense MSMS UPN48_class_I_Rep_2 6 495.78314208984375 3 496.012062 1485.01436 NaN NaN NaN NaN NaN NaN NaN 114.6 1 118.27 117.77 118.77 3.6616 0 0 0 0.38417 1 27399 27399 0 0 1 36306 32997 22967 22978 41497 41497 0.2912490951782729 RKLGAAHR 8 Unmodified _RKLGAAHR_ 0 0 0 REV__ENST00000272227.7_1_2:10942757-10952923:-|nuORF REV__ENST00000272227.7_1_2:10942757-10952923:-|nuORF MSMS UPN48_class_I_Rep_1 5 454.7804870605469 2 454.780485 907.546417 NaN NaN NaN NaN NaN NaN NaN 116.87 1 120.49 119.99 120.99 3.6254 0 0 0 0.40746 1 28471 28471 0.69038 0 1 + 36307 21610 22968 22979 41498 41498 0.08894555042502361 RKLGHRHA 8 Unmodified _RKLGHRHA_ 0 0 0 MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.7905578613281 2 487.791384 973.568215 0.28165 0.00013739 -1.3769 -0.00067165 -1.0953 -0.00053427 487.7905151988471 75.923 0.17723 79.506 79.417 79.594 3.5831 28 19 2 0 0 0 0.82752 1 17870 17870 0.69038 0 1 89371 36308 16299 22969 22980 41499 41499 0.0803735979106932 RKLGHRHA 8 Unmodified _RKLGHRHA_ 0 0 0 MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MSMS UPN48_class_I_Rep_3 7 487.790771484375 2 487.791384 973.568215 NaN NaN NaN NaN NaN NaN NaN 74.088 1 77.638 77.138 78.138 3.5505 0 0 0 0.40738 1 17355 17355 0.79363 0 1 36309 16299 22969 22980 41500 41500 0.0803735979106932 RKLGHRHA 8 Unmodified _RKLGHRHA_ 0 0 0 MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 487.791384 973.568215 0.2807 0.00013693 -1.5024 -0.00073286 -1.2217 -0.00059593 487.79056804087367 76.173 0.28418 79.494 79.445 79.729 3.3216 0.0098644 -0.00011889 NaN 0.69038 38 28 2 NaN NaN NaN NaN 0 NaN NaN 0 125120 36310 16299 22969 22980 0.0803735979106932 RKLGHRHA 8 Unmodified _RKLGHRHA_ 0 0 0 MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 487.791384 973.568215 0.17866 8.7148E-05 -1.1865 -0.00057878 -1.0079 -0.00049163 487.790751152291 75.988 0.1113 79.488 79.447 79.558 3.4996 0.0031481 0.00018926 NaN 0.69038 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 85152 36311 16299 22969 22980 0.0803735979106932 RKLGHRHA 8 Unmodified _RKLGHRHA_ 0 0 0 MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|12|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 487.791384 973.568215 0.24967 0.00012179 -1.275 -0.00062195 -1.0254 -0.00050017 487.7905873736994 75.667 0.21073 79.268 79.177 79.388 3.6012 -0.21621 0.00010292 NaN 0.69038 30 23 2 NaN NaN NaN NaN 0 NaN NaN 0 86212 36312 16299 22969 22980 0.0803735979106932 RKLHITQH 8 Unmodified _RKLHITQH_ 0 0 0 REV__L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|14|1|sense REV__L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 516.805419921875 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 96.791 1 96.791 96.291 97.291 0 0 0 0 0.40625 1 23541 23541 2.3027 0 1 + 36313 27685 22970 22981 41501 41501 0.08431093385456734 RKLHITQH 8 Unmodified _RKLHITQH_ 0 0 0 REV__L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|14|1|sense REV__L1ME1_dup22903|chr12:95479916-95481086:-|1.7072628977364408|0.1559576529325617|3.45|151.0|14|1|sense MSMS UPN47_class_I_Rep_2 3 516.8057861328125 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 106.89 1 110.43 109.93 110.93 3.5345 0 0 0 0.40625 1 25872 25872 2.3027 0 1 + 36314 27685 22970 22981 41502 41502 0.08431093385456734 RKLHLIFFHV 10 Unmodified _RKLHLIFFHV_ 0 0 0 REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 437.2679138183594 3 437.267909 1308.7819 -0.097417 -4.2598E-05 -0.24226 -0.00010593 -0.33968 -0.00014853 437.26752339697225 50.659 1.183 54.288 53.59 54.773 3.6285 99 57 3 0 0 0 0.56433 1 11002 11002 0.77653 0 1 111800 + 36315 22195 22971 22982 41503 41503 0.13985647447270821 RKLHLIFFHV 10 Unmodified _RKLHLIFFHV_ 0 0 0 REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 437.2676086425781 3 437.267909 1308.7819 -0.32183 -0.00014072 -0.12059 -5.2729E-05 -0.44242 -0.00019345 437.2677418913459 50.525 1.103 53.868 53.31 54.413 3.3431 87 57 2 0 0 0 0.5652 1 11174 11174 0.15932 0 1 106500 + 36316 22195 22971 22982 41504 41504 0.13985647447270821 RKLHLIFFHV 10 Unmodified _RKLHLIFFHV_ 0 0 0 REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 437.267909 1308.7819 0.077368 3.3831E-05 -0.51584 -0.00022556 -0.43847 -0.00019173 437.2675568525381 54.106 0.12701 54.106 54.03 54.157 0 0.10932 -0.00053662 NaN 0.77653 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 134300 + 36317 22195 22971 22982 0.13985647447270821 RKLHLIFFHV 10 Unmodified _RKLHLIFFHV_ 0 0 0 REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 437.267909 1308.7819 -0.32183 -0.00014072 -0.12059 -5.2729E-05 -0.44242 -0.00019345 437.2677418913459 50.525 1.103 53.868 53.31 54.413 3.3431 -0.1282 -1.8128E-05 NaN 0.77653 87 57 2 NaN NaN NaN NaN 0 NaN NaN 0 106500 + 36318 22195 22971 22982 0.13985647447270821 RKLHLIFFHV 10 Unmodified _RKLHLIFFHV_ 0 0 0 REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 437.267909 1308.7819 -0.31622 -0.00013827 0.14253 6.2323E-05 -0.17369 -7.5948E-05 437.60234426811513 50.497 0.49604 53.723 53.445 53.941 3.2262 -0.27276 0.00032703 NaN 0.77653 44 27 2 NaN NaN NaN NaN 0 NaN NaN 0 68977 + 36319 22195 22971 22982 0.13985647447270821 RKLHPAGK 8 Unmodified _RKLHPAGK_ 0 0 0 Tigger9b_dup735|chr20:49694706-49695210:+|1.2777412109801791|0.0132959340129929|6.59|151.0|6|2|sense Tigger9b_dup735|chr20:49694706-49695210:+|1.2777412109801791|0.0132959340129929|6.59|151.0|6|2|sense Tigger9b_dup735|chr20:49694706-49695210:+|1.2777412109801791|0.0132959340129929|6.59|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 453.78509521484375 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 70.213 1 73.585 73.085 74.085 3.3713 0 0 0 0.40746 1 17052 17052 0.69038 0 1 36320 33466 22972 22983 41505 41505 0.09936323328031449 RKLIAKAIRP 10 Unmodified _RKLIAKAIRP_ 0 0 0 REV__L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|12|2|sense REV__L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 583.3970336914062 2 583.398225 1164.7819 NaN NaN NaN NaN NaN NaN NaN 72.774 1 76.247 75.747 76.747 3.4732 0 0 0 0.53105 1 17103 17103 0 0 1 + 36321 27794 22973 22984 41506 41506 0.20609647447236057 RKLIQPYLY 9 Unmodified _RKLIQPYLY_ 0 0 0 REV__HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|206|3|anti-sense REV__HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|206|3|anti-sense MSMS UPN47_class_I_Rep_1 2 597.3566284179688 2 597.355691 1192.69683 NaN NaN NaN NaN NaN NaN NaN 77.688 1 81.117 80.617 81.617 3.4289 0 0 0 0.40038 1 19287 19287 0.6015 0 1 + 36322 23849 22974 22985 41507 41507 0.10818857190793096 RKLIRHSL 8 Unmodified _RKLIRHSL_ 0 0 0 REV__Charlie1a_dup4947|chr15:85602788-85603502:-|1.6971027909703948|0.0174293874415331|6.61|151.0|52|3|anti-sense REV__Charlie1a_dup4947|chr15:85602788-85603502:-|1.6971027909703948|0.0174293874415331|6.61|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_3 7 511.83270263671875 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 19.624 1 23.246 22.746 23.746 3.6215 0 0 0 0.40753 1 1518 1518 0.6015 0 1 + 36323 17337 22975 22986 41508 41508 0.14092256799222014 RKLIRKAT 8 Unmodified _RKLIRKAT_ 0 0 0 REV__L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|13|2|sense REV__L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 493.35357666015625 2 493.335093 984.655633 NaN NaN NaN NaN NaN NaN NaN 109.58 1 113.21 112.71 113.71 3.6321 0 0 0 0.40753 1 26613 26613 0.6015 0 1 + 36324 26791 22976 22987 41509 41509 0.1626914094198355 RKLKIALAL 9 Unmodified _RKLKIALAL_ 0 0 0 nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 MSMS UPN46_class_I_Rep_3 1 513.3622436523438 2 513.363319 1024.71209 NaN NaN NaN NaN NaN NaN NaN 40.856 1 40.856 40.356 41.356 0 0 0 0 0.4029 1 7960 7960 0 0 1 36325 3126 22977 22988 41510 41510 0.20071768778620935 RKLKIALAL 9 Unmodified _RKLKIALAL_ 0 0 0 nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 nc|ENSG00000139151|Q86YW0-2|PLCZ1 MSMS UPN47_class_I_Rep_3 4 513.7974853515625 2 513.363319 1024.71209 NaN NaN NaN NaN NaN NaN NaN 94.717 1 98.123 97.623 98.623 3.4068 0 0 0 0.4029 1 23566 23566 0 0 1 36326 3126 22977 22988 41511 41511 0.20071768778620935 RKLKKFLKL 9 Unmodified _RKLKKFLKL_ 0 0 0 REV__L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|143|3|sense REV__L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|143|3|sense MSMS UPN48_class_I_Rep_1 5 587.4131469726562 2 587.413343 1172.81213 NaN NaN NaN NaN NaN NaN NaN 29.561 1 33.111 32.611 33.611 3.5499 0 0 0 0.4029 1 4127 4127 0 0 1 + 36327 29037 22978 22989 41512 41512 0.2326400611243571 RKLKKKRKLKH 11 Unmodified _RKLKKKRKLKH_ 0 0 0 L1MA3_dup6094|chr10:68005151-68005705:-|1.6090074508639292|0.020851289286634|6.27|151.0|6|2|sense L1MA3_dup6094|chr10:68005151-68005705:-|1.6090074508639292|0.020851289286634|6.27|151.0|6|2|sense L1MA3_dup6094|chr10:68005151-68005705:-|1.6090074508639292|0.020851289286634|6.27|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 488.2923583984375 3 488.343811 1462.0096 NaN NaN NaN NaN NaN NaN NaN 78.459 1 81.904 81.404 82.404 3.4456 0 0 0 0.38417 1 19507 19507 0.094841 0.094841 1 36328 9578 22979 22990 41513 41513 0.29708025375089164 RKLKQYTN 8 Unmodified _RKLKQYTN_ 0 0 0 REV__MER4A1_dup2113|chr19:57818476-57818792:-|1.02146497811696|0.0206669943328561|5.63|151.0|5|2|sense REV__MER4A1_dup2113|chr19:57818476-57818792:-|1.02146497811696|0.0206669943328561|5.63|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 525.7376708984375 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 119.58 1 119.58 119.08 120.08 0 0 0 0 0.40625 1 29727 29727 2.3027 0 1 + 36329 31350 22980 22991 41514 41514 0.07536253945750104 RKLLHHQSFR 10 Unmodified _RKLLHHQSFR_ 0 0 0 REV__L1MA4_dup3451|chr5:138997228-138997572:-|1.423788419616889|0.0146857768884872|6.6|151.0|14|2|anti-sense REV__L1MA4_dup3451|chr5:138997228-138997572:-|1.423788419616889|0.0146857768884872|6.6|151.0|14|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.592529296875 3 441.258184 1320.75272 -0.068147 -3.0071E-05 -0.016209 -7.1522E-06 -0.084356 -3.7223E-05 441.2581591665414 31.345 0.49035 31.345 31.141 31.632 0 71 35 3 0 0 0 0.56296 1 5225 5225 1.7423 0.52744 1 103350 + 36330 25156 22981 22992 41515 41515 0.10517503150958873 RKLLILLILL 10 Unmodified _RKLLILLILL_ 0 0 0 REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|123|3|anti-sense REV__L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|123|3|anti-sense MSMS UPN46_class_I_Rep_3 1 604.4469604492188 2 604.446852 1206.87915 NaN NaN NaN NaN NaN NaN NaN 56.521 1 56.521 56.021 57.021 0 0 0 0 0.53105 1 12334 12334 0 0 1 + 36331 27544 22982 22993 41516 41516 0.2839861660356746 RKLLKQKYG 9 Unmodified _RKLLKQKYG_ 0 0 0 REV__L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|112|2|sense REV__L1PA7_dup4558|chr5:115877198-115883667:-|1.5199870202914836|0.1962089050605173|2.95|151.0|112|2|sense MSMS UPN48_class_I_Rep_1 5 567.3633422851562 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 42.523 1 46.03 45.53 46.53 3.5079 0 0 0 0.4007 1 7875 7875 0.52476 0 1 + 36332 30106 22983 22994 41517 41517 0.14701679284939928 RKLMATELP 9 Unmodified _RKLMATELP_ 0 0 0 REV__nc|ENSG00000137936|O75815-2|BCAR3 REV__nc|ENSG00000137936|O75815-2|BCAR3 MSMS UPN48_class_I_Rep_2 6 529.8042602539062 2 529.804977 1057.5954 NaN NaN NaN NaN NaN NaN NaN 23.367 1 27.01 26.51 27.51 3.6432 0 0 0 0.39428 1 2537 2537 2.0598 0 1 + 36333 19253 22984 22995 41518 41518 0.06890662496562072 RKLMFPHQ 8 Unmodified _RKLMFPHQ_ 0 0 0 REV__L1MB7_dup2843|chr2:127347021-127347808:+|1.1413704263503626|0.0110736859737708|6.69|151.0|11|2|sense REV__L1MB7_dup2843|chr2:127347021-127347808:+|1.1413704263503626|0.0110736859737708|6.69|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 528.794189453125 2 528.792204 1055.56985 NaN NaN NaN NaN NaN NaN NaN 22.672 1 26.315 25.815 26.815 3.6432 0 0 0 0.40604 1 2354 2354 2.5775 0.27475 1 + 36334 26246 22985 22996 41519 41519 0.044292327648236096 RKLNNEPD 8 Unmodified _RKLNNEPD_ 0 0 0 REV__L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|15|1|sense REV__L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 493.2566833496094 2 493.256705 984.498858 NaN NaN NaN NaN NaN NaN NaN 109.98 1 109.98 109.48 110.48 0 0 0 0 0.40604 1 27062 27062 2.5775 0 1 + 36335 24925 22986 22997 41520 41520 0.0059881126099980975 RKLNVKYYR 9 Unmodified _RKLNVKYYR_ 0 0 0 REV__nc|ENSG00000086619|Q86YB8-2|ERO1B REV__nc|ENSG00000086619|Q86YB8-2|ERO1B MSMS UPN48_class_I_Rep_1 5 620.37158203125 2 620.369664 1238.72478 NaN NaN NaN NaN NaN NaN NaN 86.025 1 89.638 89.138 90.138 3.613 0 0 0 0.4007 1 20600 20600 0.52476 0.066424 1 + 36336 17970 22987 22998 41521 41521 0.11496180170888692 RKLQLAFL 8 Unmodified _RKLQLAFL_ 0 0 0 REV__ENSG00000006607|ENST00000264042|FARP2 REV__ENSG00000006607|ENST00000264042|FARP2 MSMS UPN46_class_I_Rep_3 1 494.8197021484375 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 25.194 1 25.194 24.694 25.694 0 0 0 0 0.40738 1 3419 3419 0.79363 0 1 + 36337 17538 22988 22999 41522 41522 0.12862933819133104 RKLREYNK 8 Unmodified _RKLREYNK_ 0 0 0 REV__Harlequin-int_dup229|chr6:35000246-35001248:+|1.231125438536271|0.064387398231257|4.26|151.0|40|3|sense REV__Harlequin-int_dup229|chr6:35000246-35001248:+|1.231125438536271|0.064387398231257|4.26|151.0|40|3|sense MSMS UPN47_class_I_Rep_1 2 553.8142700195312 2 553.825089 1105.63563 NaN NaN NaN NaN NaN NaN NaN 39.654 1 43.321 42.821 43.821 3.6668 0 0 0 0.40527 1 7778 7778 3.5965 0.60125 1 + 36338 23512 22989 23000 41523 41523 0.08703345211347369 RKLRNMWRKSR 11 Unmodified _RKLRNMWRKSR_ 0 0 0 L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 510.634521484375 3 510.968527 1529.88375 0.32056 0.0001638 0.528 0.00026979 0.84856 0.00043359 510.96867348238413 97.701 0.14882 101.48 101.37 101.52 3.779 35 21 2 0 0 0 22.551 1 23201 23201 0.094841 0 1 136680 36339 9052 22990 23001 41524 41524 0.14000570527355194 RKLRWWTHWAW 11 Unmodified _RKLRWWTHWAW_ 0 0 0 AluJb_dup115280|chr19:14416679-14416986:-|1.0613918632094734|0.4326625809530209|1.29|151.0|11|3|sense AluJb_dup115280|chr19:14416679-14416986:-|1.0613918632094734|0.4326625809530209|1.29|151.0|11|3|sense AluJb_dup115280|chr19:14416679-14416986:-|1.0613918632094734|0.4326625809530209|1.29|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 542.6233520507812 3 542.624866 1624.85277 NaN NaN NaN NaN NaN NaN NaN 64.634 1 64.634 64.134 65.134 0 0 0 0 0.38417 1 14560 14560 0.094841 0.094841 1 36340 23 22991 23002 41525 41525 0.06533740484792361 RKLSAEHK 8 Unmodified _RKLSAEHK_ 0 0 0 ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF;ENSG00000052749.14,RRP12,chr10,-,I20.1,97379771,97380798|50|22.55|2|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron ENSG00000052749.14,RRP12,chr10,-,I31.1,97367377,97369424|28|22.98|1|intron MSMS UPN48_class_I_Rep_2 6 484.9532470703125 2 484.785433 967.556313 NaN NaN NaN NaN NaN NaN NaN 39.406 1 43.136 42.636 43.636 3.7297 0 0 0 0.40472 1 6988 6988 4.3292 0 1 36341 923 22992 23003 41526 41526 0.07123698257225897 RKLVCFMR 8 Unmodified _RKLVCFMR_ 0 0 0 REV__L1MA4A_dup1019|chr3:31650807-31651388:+|1.0674581205829996|0.1870412369558717|2.51|151.0|31|2|anti-sense REV__L1MA4A_dup1019|chr3:31650807-31651388:+|1.0674581205829996|0.1870412369558717|2.51|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_3 4 527.2606811523438 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 15.592 1 18.958 18.458 19.458 3.3659 0 0 0 0.40746 1 826 826 0.69038 0 1 + 36342 25232 22993 23004 41527 41527 0.05458463409786418 RKLVDREGLIP 11 Unmodified _RKLVDREGLIP_ 0 0 0 nc|ENSG00000117425|Q9Y6C5-2|PTCH2;ENSG00000117425|ENST00000372192|PTCH2 nc|ENSG00000117425|Q9Y6C5-2|PTCH2 nc|ENSG00000117425|Q9Y6C5-2|PTCH2 MULTI-MSMS UPN47_class_I_Rep_1 2 648.3932495117188 2 648.393336 1294.77212 0.5846 0.00037905 -0.35072 -0.0002274 0.23388 0.00015165 648.3934355040695 100.19 1.1212 103.98 103.61 104.73 3.7942 280 154 3 0 0 0 0.65271 1 24800 24800 2.9952 0.26005 1 523440 36343 2217 22994 23005 41528 41528 0.13652414651232903 RKLVDREGLIP 11 Unmodified _RKLVDREGLIP_ 0 0 0 nc|ENSG00000117425|Q9Y6C5-2|PTCH2;ENSG00000117425|ENST00000372192|PTCH2 nc|ENSG00000117425|Q9Y6C5-2|PTCH2 nc|ENSG00000117425|Q9Y6C5-2|PTCH2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 648.393336 1294.77212 0.65407 0.0004241 -0.7662 -0.0004968 -0.11213 -7.2704E-05 648.3927679240561 99.882 1.0574 103.74 103.37 104.43 3.8537 -0.26505 -3.3686E-05 NaN 2.9952 422 150 4 NaN NaN NaN NaN 0 NaN NaN 0 2029600 36344 2217 22994 23005 0.13652414651232903 RKLVEPIE 8 Unmodified _RKLVEPIE_ 0 0 0 REV__nc|ENSG00000224287|P0C860|MSL3B REV__nc|ENSG00000224287|P0C860|MSL3B MULTI-SECPEP UPN48_class_I_Rep_3 7 491.7960510253906 2 492.297842 982.581131 0.13998 6.8912E-05 -0.45879 -0.00022586 -0.31881 -0.00015695 492.2975540317169 49.944 0.27277 53.565 53.358 53.63 3.621 25 16 2 0 0 0 0.72333 1 10047 10047 4.3292 0 1 170760 + 36345 32107 22995 23006 41529 41529 0.08914333339942004 RKLVIAPH 8 Unmodified _RKLVIAPH_ 0 0 0 REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 467.30133056640625 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 83.957 1 87.638 87.138 88.138 3.6814 0 0 0 0.40738 1 19973 19973 0.79363 0 1 + 36346 32607 22996 23007 41530 41530 0.12297780504877664 RKLVIAPH 8 Unmodified _RKLVIAPH_ 0 0 0 REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 467.30169677734375 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 84.145 1 87.839 87.339 88.339 3.6937 0 0 0 0.40738 1 20023 20023 0.79363 0 1 + 36347 32607 22996 23007 41531 41531 0.12297780504877664 RKLVIAPH 8 Unmodified _RKLVIAPH_ 0 0 0 REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 467.3014831542969 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 84.028 1 87.756 87.256 88.256 3.7281 0 0 0 0.40738 1 19935 19935 0.79363 0 1 + 36348 32607 22996 23007 41532 41532 0.12297780504877664 RKLVIAPH 8 Unmodified _RKLVIAPH_ 0 0 0 REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense REV__Tigger17a_dup552|chr4:83062346-83062971:+|1.0354692058158286|0.2187062739688652|2.24|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 467.30230712890625 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 84.149 1 87.878 87.378 88.378 3.7281 0 0 0 0.40738 1 19966 19966 0.79363 0 1 + 36349 32607 22996 23007 41533 41533 0.12297780504877664 RKLWLRLW 8 Unmodified _RKLWLRLW_ 0 0 0 REV__Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|101|2|anti-sense REV__Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|101|2|anti-sense MSMS UPN48_class_I_Rep_2 6 585.8653564453125 2 585.86656 1169.71857 NaN NaN NaN NaN NaN NaN NaN 35.796 1 39.483 38.983 39.983 3.6877 0 0 0 0.40746 1 5946 5946 0.69038 0 1 + 36350 32327 22997 23008 41534 41534 0.14049706730020262 RKLYRLIER 9 Unmodified _RKLYRLIER_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MSMS UPN48_class_I_Rep_1 5 416.2640686035156 3 416.262935 1245.76697 NaN NaN NaN NaN NaN NaN NaN 101.74 1 105.35 104.85 105.85 3.612 0 0 0 0.4007 1 24551 24551 0.23584 0 1 36351 2022 22998 23009 41535 41535 0.15392155579274913 RKMEWWKKMWQ 11 Unmodified _RKMEWWKKMWQ_ 0 0 0 REV__nc|ENSG00000130234|Q9BYF1-3|ACE2 REV__nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-MSMS UPN48_class_I_Rep_3 7 546.2791137695312 3 546.279491 1635.81664 0.38033 0.00020776 -0.68828 -0.00037599 -0.30796 -0.00016823 546.2788030709834 40.786 0.50552 44.437 44.067 44.573 3.6509 72 47 3 0 0 0 0.68478 1 7293 7293 0.094841 0 1 121080 + 36352 18934 22999 23010 41536 41536 0.024167792013940925 RKMIKVNDKLL 11 Unmodified _RKMIKVNDKLL_ 0 0 0 L1MC4a_dup5005|chr8:100936827-100937214:+|3.1011538441345388|0.058344423059823|5.73|151.0|14|1|anti-sense L1MC4a_dup5005|chr8:100936827-100937214:+|3.1011538441345388|0.058344423059823|5.73|151.0|14|1|anti-sense L1MC4a_dup5005|chr8:100936827-100937214:+|3.1011538441345388|0.058344423059823|5.73|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 453.2854919433594 3 453.283118 1356.82753 NaN NaN NaN NaN NaN NaN NaN 78.948 1 82.394 81.894 82.894 3.4456 0 0 0 0.38417 1 19647 19647 0.45452 0.046251 1 36353 11589 23000 23011 41537 41537 0.16338504847362856 RKMKICLH 8 Unmodified _RKMKICLH_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|83|3|sense L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|83|3|sense L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|83|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.7962036132812 2 514.796432 1027.57831 -0.23856 -0.00012281 -0.29641 -0.00015259 -0.53497 -0.0002754 514.7961798934068 15.903 0.29414 19.4 19.281 19.575 3.4968 57 36 2 0 0 0 0.82752 1 954 954 0 0 1 33753 36354 12340 23001 23012 41538 41538 0.06562463409773045 RKMKPPYL 8 Unmodified _RKMKPPYL_ 0 0 0 ENST00000523669.5_1_8:86025320-86042154:+|nuORF;nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1 ENST00000523669.5_1_8:86025320-86042154:+|nuORF ENST00000523669.5_1_8:86025320-86042154:+|nuORF MSMS UPN47_class_I_Rep_1 2 516.80615234375 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 102.53 1 106.32 105.82 106.82 3.7888 0 0 0 0.40746 1 25234 25234 0.69038 0 1 36355 2815 23002 23013 41539 41539 0.08047287567387684 RKMLCAWI 8 Unmodified _RKMLCAWI_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS UPN47_class_I_Rep_1 2 510.7781677246094 2 510.777708 1019.54086 NaN NaN NaN NaN NaN NaN NaN 114.14 1 117.71 117.21 118.21 3.572 0 0 0 0.40738 1 28194 28194 0.79363 0 1 + 36356 18034 23003 23014 41540 41540 0.0318737214417979 RKMLPTQFL 9 Unmodified _RKMLPTQFL_ 0 0 0 GPRC5A|p.T96Hfs*24|1|0.07|ENSG00000013588|chr12:12908532-12908532|C/-|frameshift_variant;ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF GPRC5A|p.T96Hfs*24|1|0.07|ENSG00000013588|chr12:12908532-12908532|C/-|frameshift_variant GPRC5A|p.T96Hfs*24|1|0.07|ENSG00000013588|chr12:12908532-12908532|C/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 567.2957763671875 2 567.328619 1132.64269 NaN NaN NaN NaN NaN NaN NaN 85.638 1 89.23 88.73 89.73 3.5914 0 0 0 0.39518 1 21387 21387 1.8442 0 1 36357 791 23004 23015 41541 41541 0.08166941767581193 RKMNFVGLL 9 Unmodified _RKMNFVGLL_ 0 0 0 REV__L1PREC2_dup5787|chr12:9187011-9190530:+|1.4630518329759543|0.0811721165215578|4.17|151.0|183|2|anti-sense REV__L1PREC2_dup5787|chr12:9187011-9190530:+|1.4630518329759543|0.0811721165215578|4.17|151.0|183|2|anti-sense MSMS UPN47_class_I_Rep_2 3 539.307373046875 2 539.315512 1076.61647 NaN NaN NaN NaN NaN NaN NaN 12.715 1 16.103 15.603 16.603 3.388 0 0 0 0.39428 1 135 135 2.0598 0 1 + 36358 30731 23005 23016 41542 41542 0.08122672596118719 RKMRERKKKRM 11 Unmodified _RKMRERKKKRM_ 0 0 0 REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|16|2|sense REV__L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|16|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 516.8058471679688 3 516.313418 1545.91842 0.32388 0.00016722 -1.3242 -0.00068372 -1.0004 -0.0005165 516.6466577582952 106.52 0.086487 106.52 106.47 106.56 0 11 9 2 0 0 0 22.551 1 25964 25964 0.094841 0 1 64016 + 36359 28226 23006 23017 41543 41543 0.16730070343783154 RKMRKATG 8 Unmodified _RKMRKATG_ 0 0 0 REV__L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|44|3|sense REV__L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|44|3|sense MSMS UPN46_class_I_Rep_3 1 474.2823181152344 2 474.282003 946.549453 NaN NaN NaN NaN NaN NaN NaN 22.467 1 22.467 21.967 22.967 0 0 0 0 0.40746 1 2672 2672 0.69038 0 1 + 36360 26684 23007 23018 41544 41544 0.07404062105024423 RKMRRPRK 8 Unmodified _RKMRRPRK_ 0 0 0 REV__nc|ENSG00000135074|Q9H013|ADAM19 REV__nc|ENSG00000135074|Q9H013|ADAM19 MSMS UPN48_class_I_Rep_3 7 564.7709350585938 2 564.356368 1126.69818 NaN NaN NaN NaN NaN NaN NaN 79.587 1 83.229 82.729 83.729 3.6423 0 0 0 0.40746 1 18874 18874 0.69038 0.16561 1 + 36361 19123 23008 23019 41545 41545 0.13990212798580615 RKMSELLYH 9 Unmodified _RKMSELLYH_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MSMS UPN48_class_I_Rep_3 7 588.8147583007812 2 588.813333 1175.61211 NaN NaN NaN NaN NaN NaN NaN 68.315 1 71.824 71.324 72.324 3.5094 0 0 0 0.38299 1 15658 15658 4.756 0 1 36362 4665 23009 23020 41546 41546 0.031331633825402605 RKMTITFPF 9 Unmodified _RKMTITFPF_ 0 0 0 REV__L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|12|1|sense REV__L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 570.8331298828125 2 570.815344 1139.61614 NaN NaN NaN NaN NaN NaN NaN 13.149 1 16.606 16.106 17.106 3.457 0 0 0 0.39428 1 258 258 2.0598 0 1 + 36363 28965 23010 23021 41547 41547 0.0519125287623865 RKNGKRAQ 8 Unmodified _RKNGKRAQ_ 0 0 0 REV__L1MD2_dup10311|chr20:32404297-32404906:-|1.3720185809248138|0.0072568703239068|7.56|150.0|19|3|sense REV__L1MD2_dup10311|chr20:32404297-32404906:-|1.3720185809248138|0.0072568703239068|7.56|150.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 479.28753662109375 2 479.288674 956.562795 NaN NaN NaN NaN NaN NaN NaN 13.049 1 13.049 12.549 13.549 0 0 0 0 0.40625 1 284 284 2.3027 0 1 + 36364 27385 23011 23022 41548 41548 0.0827763620859514 RKNGKRPQ 8 Unmodified _RKNGKRPQ_ 0 0 0 REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|108|2|sense REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|108|2|sense MSMS UPN46_class_I_Rep_3 1 492.26922607421875 2 492.296499 982.578445 NaN NaN NaN NaN NaN NaN NaN 69.75 1 69.75 69.25 70.25 0 0 0 0 0.40746 1 15998 15998 0.69038 0 1 + 36365 30373 23012 23023 41549 41549 0.08645922725645505 RKNISYAK 8 Unmodified _RKNISYAK_ 0 0 0 REV__L1PA5_dup8338|chr11:76927460-76931953:-|1.0465980545712232|0.0392270522504873|4.74|151.0|81|2|sense REV__L1PA5_dup8338|chr11:76927460-76931953:-|1.0465980545712232|0.0392270522504873|4.74|151.0|81|2|sense MSMS UPN48_class_I_Rep_3 7 490.28887939453125 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 89.703 1 93.532 93.032 94.032 3.8293 0 0 0 0.40643 1 21301 21301 2.0598 0 1 + 36366 29807 23013 23024 41550 41550 0.07092582399991443 RKNKNKGSIPP 11 Unmodified _RKNKNKGSIPP_ 0 0 0 REV__MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|87|2|anti-sense REV__MER68-int_dup76|chr7:92279285-92280933:-|1.032282572902376|0.0178990979886148|5.85|151.0|87|2|anti-sense MSMS UPN48_class_I_Rep_3 7 619.8697509765625 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 87.034 1 90.825 90.325 91.325 3.7905 0 0 0 0.38417 1 20649 20649 2.7352 0 1 + 36367 31543 23014 23025 41551 41551 0.11614974819940471 RKNPPTYS 8 Unmodified _RKNPPTYS_ 0 0 0 ENSG00000100154|ENST00000397906|TTC28 ENSG00000100154|ENST00000397906|TTC28 ENSG00000100154|ENST00000397906|TTC28 MULTI-MSMS UPN47_class_I_Rep_2 3 481.7564392089844 2 481.756341 961.498129 0.25714 0.00012388 -0.29255 -0.00014094 -0.035403 -1.7055E-05 481.75617008092195 51.553 0.99009 54.891 54.464 55.454 3.3386 106 49 3 0 0 0 0.82752 1 11400 11400 2.5775 0 1 416250 36368 1477 23015 23026 41552 41552 0.015840166119346577 RKNRTWAY 8 Unmodified _RKNRTWAY_ 0 0 0 HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|29|3|sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|29|3|sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|29|3|sense MSMS UPN48_class_I_Rep_3 7 547.8107299804688 2 547.796332 1093.57811 NaN NaN NaN NaN NaN NaN NaN 17.408 1 20.972 20.472 21.472 3.5637 0 0 0 0.40738 1 985 985 0.79363 0 1 36369 7852 23016 23027 41553 41553 0.03506503005792183 RKNVLHLAVFI 11 Unmodified _RKNVLHLAVFI_ 0 0 0 L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|53|1|anti-sense L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|53|1|anti-sense L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2754821777344 3 437.274952 1308.80303 NaN NaN NaN NaN NaN NaN NaN 60.33 1 63.804 63.304 64.304 3.4737 0 0 0 0.38417 1 13335 13335 1.3296 0.11481 1 36370 12806 23017 23028 41554 41554 0.16097612756107083 RKNVLHLAVFI 11 Unmodified _RKNVLHLAVFI_ 0 0 0 L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|53|1|anti-sense L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|53|1|anti-sense L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 437.26739501953125 3 437.274952 1308.80303 NaN NaN NaN NaN NaN NaN NaN 49.757 1 53.452 52.952 53.952 3.6946 0 0 0 0.38417 1 10088 10088 1.4551 0.12547 1 36371 12806 23017 23028 41555 41555 0.16097612756107083 RKNWQHQH 8 Unmodified _RKNWQHQH_ 0 0 0 REV__L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|61|3|sense REV__L1MA3_dup8387|chr18:79089633-79091836:-|2.1834761468659334|0.0352217582653775|5.95|150.0|61|3|sense MSMS UPN48_class_I_Rep_2 6 567.289306640625 2 567.289205 1132.56386 NaN NaN NaN NaN NaN NaN NaN 33.988 1 37.648 37.148 38.148 3.6607 0 0 0 0.40746 1 5427 5427 0.69038 0.088878 1 + 36372 25127 23018 23029 41556 41556 0.002878505775015583 RKPHFLRR 8 Unmodified _RKPHFLRR_ 0 0 0 THE1B-int_dup2183|chr7:156860499-156862068:-|1.1868496243109363|0.0206264208921207|5.85|151.0|23|2|sense THE1B-int_dup2183|chr7:156860499-156862068:-|1.1868496243109363|0.0206264208921207|5.85|151.0|23|2|sense THE1B-int_dup2183|chr7:156860499-156862068:-|1.1868496243109363|0.0206264208921207|5.85|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 555.3461303710938 2 555.343784 1108.67301 NaN NaN NaN NaN NaN NaN NaN 87.217 1 90.934 90.434 91.434 3.7171 0 0 0 0.40746 1 20748 20748 0.69038 0 1 36373 32908 23019 23030 41557 41557 0.12302481267647636 RKPHLPFP 8 Unmodified _RKPHLPFP_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|249|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|249|1|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|249|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.29547119140625 2 496.295436 990.57632 0.29249 0.00014516 -0.69992 -0.00034737 -0.40743 -0.00020221 496.29536271229836 42.193 0.064598 42.193 42.155 42.219 0 11 6 4 0 0 0 0.72333 1 8339 8339 0.79363 0 1 1409800 36374 7993 23020 23031 41558 41558 0.0806549398784 RKPIISQLKKY 11 Unmodified _RKPIISQLKKY_ 0 0 0 REV__L1ME2z_dup1492|chr3:195428717-195429105:+|1.0747212773249886|0.0027577451770429|8.61|150.0|31|3|anti-sense REV__L1ME2z_dup1492|chr3:195428717-195429105:+|1.0747212773249886|0.0027577451770429|8.61|150.0|31|3|anti-sense MSMS UPN48_class_I_Rep_1 5 458.6243591308594 3 458.625761 1372.85546 NaN NaN NaN NaN NaN NaN NaN 101.58 1 105.19 104.69 105.69 3.612 0 0 0 0.38417 1 24518 24518 1.3296 0 1 + 36375 27904 23021 23032 41559 41559 0.18394151099073497 RKPKAAVP 8 Unmodified _RKPKAAVP_ 0 0 0 ENST00000397150.5_1_20:35929770-35944815:+|nuORF;ENSG00000101363|ENST00000373606|MANBAL ENST00000397150.5_1_20:35929770-35944815:+|nuORF ENST00000397150.5_1_20:35929770-35944815:+|nuORF MSMS UPN46_class_I_Rep_3 1 433.77197265625 2 433.782162 865.549771 NaN NaN NaN NaN NaN NaN NaN 72.733 1 72.733 72.233 73.233 0 0 0 0 0.40746 1 16826 16826 0.69038 0 1 36376 1569 23022 23033 41560 41560 0.11161805096503485 RKPKAAVP 8 Unmodified _RKPKAAVP_ 0 0 0 ENST00000397150.5_1_20:35929770-35944815:+|nuORF;ENSG00000101363|ENST00000373606|MANBAL ENST00000397150.5_1_20:35929770-35944815:+|nuORF ENST00000397150.5_1_20:35929770-35944815:+|nuORF MSMS UPN48_class_I_Rep_2 6 433.77215576171875 2 433.782162 865.549771 NaN NaN NaN NaN NaN NaN NaN 66.346 1 69.832 69.332 70.332 3.4866 0 0 0 0.40746 1 15151 15151 0.69038 0 1 36377 1569 23022 23033 41561 41561 0.11161805096503485 RKPKAAVP 8 Unmodified _RKPKAAVP_ 0 0 0 ENST00000397150.5_1_20:35929770-35944815:+|nuORF;ENSG00000101363|ENST00000373606|MANBAL ENST00000397150.5_1_20:35929770-35944815:+|nuORF ENST00000397150.5_1_20:35929770-35944815:+|nuORF MSMS UPN48_class_I_Rep_3 7 433.77215576171875 2 433.782162 865.549771 NaN NaN NaN NaN NaN NaN NaN 66.263 1 69.771 69.271 70.271 3.5077 0 0 0 0.40625 1 15037 15037 2.3027 0 1 36378 1569 23022 23033 41562 41562 0.11161805096503485 RKPKMPVK 8 Unmodified _RKPKMPVK_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MULTI-SECPEP UPN46_class_I_Rep_3 1 491.7953796386719 2 492.312772 982.610991 0.30065 0.00014801 1.2845 0.00063239 1.5852 0.00078041 492.31391090302344 87.976 0.028625 87.976 87.959 87.987 0 4 2 2 0 0 0 0.72333 1 21106 21106 0.69038 0 1 54156 + 36379 19771 23023 23034 41563 41563 0.11898993804300062 RKPLEAAL 8 Unmodified _RKPLEAAL_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MULTI-MSMS UPN48_class_I_Rep_3 7 449.2790222167969 2 449.279452 896.544351 0.064414 2.894E-05 -0.23445 -0.00010534 -0.17004 -7.6395E-05 449.27915741987476 49.485 0.67653 53.114 52.85 53.526 3.6291 73 43 3 0 0 0 0.82752 1 9961 9961 4.756 0 1 165390 36380 5444 23024 23035 41564 41564 0.09194081514021946 RKPMKRPA 8 Unmodified _RKPMKRPA_ 0 0 0 REV__ENSG00000188817|ENST00000343837|SNTN REV__ENSG00000188817|ENST00000343837|SNTN MSMS UPN47_class_I_Rep_3 4 492.3013916015625 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 51.276 1 54.493 53.993 54.993 3.2163 0 0 0 0.40604 1 11398 11398 2.5775 0.27475 1 + 36381 20986 23025 23036 41565 41565 0.09384939001722614 RKPNKQQLL 9 Unmodified _RKPNKQQLL_ 0 0 0 REV__MER68_dup611|chr7:105046879-105047431:-|1.6934209025473768|0.0283072045464473|5.9|151.0|23|2|anti-sense REV__MER68_dup611|chr7:105046879-105047431:-|1.6934209025473768|0.0283072045464473|5.9|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_1 5 562.84716796875 2 562.848564 1123.68258 NaN NaN NaN NaN NaN NaN NaN 82.147 1 85.722 85.222 86.222 3.5753 0 0 0 0.39518 1 19610 19610 1.8442 0 1 + 36382 31540 23026 23037 41566 41566 0.12568204762510504 RKPNRKVY 8 Unmodified _RKPNRKVY_ 0 0 0 REV__L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|6|1|sense REV__L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 530.81298828125 2 530.82235 1059.63015 NaN NaN NaN NaN NaN NaN NaN 74.19 1 77.584 77.084 78.084 3.3937 0 0 0 0.40738 1 18250 18250 0.79363 0 1 + 36383 24712 23027 23038 41567 41567 0.10271666419566827 RKPNRKVY 8 Unmodified _RKPNRKVY_ 0 0 0 REV__L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|6|1|sense REV__L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 530.8218994140625 2 530.82235 1059.63015 NaN NaN NaN NaN NaN NaN NaN 74.655 1 77.902 77.402 78.402 3.2464 0 0 0 0.40738 1 18487 18487 0.79363 0 1 + 36384 24712 23027 23038 41568 41568 0.10271666419566827 RKPPCNLFI 9 Unmodified _RKPPCNLFI_ 0 0 0 REV__L1ME4b_dup2347|chr2:105289371-105290059:-|1.2038348573816844|0.0183147734817732|6.04|148.0|42|3|anti-sense REV__L1ME4b_dup2347|chr2:105289371-105290059:-|1.2038348573816844|0.0183147734817732|6.04|148.0|42|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.3062133789062 2 544.307687 1086.60082 NaN NaN NaN NaN NaN NaN NaN 37.767 1 37.767 37.267 38.267 0 0 0 0 0.39518 1 7136 7136 1.8442 0 1 + 36385 28288 23028 23039 41569 41569 0.06098386079042939 RKPPLAAAL 9 Unmodified _RKPPLAAAL_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MSMS UPN47_class_I_Rep_2 3 468.8013610839844 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 89.469 1 92.921 92.421 93.421 3.4525 0 0 0 0.4029 1 22228 22228 0 0 1 36386 1345 23029 23040 41570 41570 0.12126360785009638 RKPPLAAAL 9 Unmodified _RKPPLAAAL_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MSMS UPN47_class_I_Rep_2 3 468.8012390136719 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 95.524 1 99 98.5 99.5 3.4753 0 0 0 0.4029 1 23509 23509 0 0 1 36387 1345 23029 23040 41571 41571 0.12126360785009638 RKPQIMFI 8 Unmodified _RKPQIMFI_ 0 0 0 L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|4|1|sense L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|4|1|sense L1MEg_dup5412|chr6:2830857-2831881:-|1.2222542079933605|0.0769047504497931|3.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 516.8060302734375 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 89.618 1 93.292 92.792 93.792 3.6738 0 0 0 0.40738 1 22409 22409 0.79363 0 1 36388 13401 23030 23041 41572 41572 0.08047287567387684 RKPQNRGK 8 Unmodified _RKPQNRGK_ 0 0 0 REV__MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|63|2|anti-sense REV__MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|63|2|anti-sense MSMS UPN48_class_I_Rep_1 5 492.29736328125 2 492.296499 982.578445 NaN NaN NaN NaN NaN NaN NaN 65.121 1 68.575 68.075 69.075 3.4541 0 0 0 0.40625 1 14792 14792 2.3027 0.4585 1 + 36389 31867 23031 23042 41573 41573 0.08645922725656874 RKPQNRGK 8 Unmodified _RKPQNRGK_ 0 0 0 REV__MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|63|2|anti-sense REV__MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|63|2|anti-sense MSMS UPN48_class_I_Rep_3 7 492.2975158691406 2 492.296499 982.578445 NaN NaN NaN NaN NaN NaN NaN 64.617 1 68.125 67.625 68.625 3.5083 0 0 0 0.40625 1 14540 14540 2.3027 0.24298 1 + 36390 31867 23031 23042 41574 41574 0.08645922725656874 RKPQNVGIKKD 11 Unmodified _RKPQNVGIKKD_ 0 0 0 REV__nc|ENSG00000166226|P78371-2|CCT2 REV__nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS UPN47_class_I_Rep_2 3 641.8828125 2 641.883136 1281.75172 0.58825 0.00037759 -1.0909 -0.00070022 -0.50264 -0.00032263 641.8823568072863 89.271 0.47369 92.723 92.52 92.994 3.4525 94 62 2 0 0 0 0.67264 1 22144 22144 1.1933 0 1 161560 + 36391 20161 23032 23043 41575 41575 0.12211243991396259 RKPRPLVLD 9 Unmodified _RKPRPLVLD_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MSMS UPN47_class_I_Rep_1 2 547.3323974609375 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 110.65 1 114.24 113.74 114.74 3.5835 0 0 0 0.39428 1 27280 27280 2.0598 0 1 36392 1969 23033 23044 41576 41576 0.13413106250845885 RKPRPLVLD 9 Unmodified _RKPRPLVLD_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MSMS UPN47_class_I_Rep_2 3 547.3328857421875 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 91.081 1 94.542 94.042 95.042 3.4613 0 0 0 0.39428 1 22565 22565 2.0598 0 1 36393 1969 23033 23044 41577 41577 0.13413106250845885 RKPRPLVLD 9 Unmodified _RKPRPLVLD_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MSMS UPN47_class_I_Rep_3 4 547.332763671875 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 89.248 1 92.641 92.141 93.141 3.3931 0 0 0 0.39428 1 22378 22378 2.0598 0 1 36394 1969 23033 23044 41578 41578 0.13413106250845885 RKPWNRGNS 9 Unmodified _RKPWNRGNS_ 0 0 0 REV__THE1B-int_dup1558|chr5:71230591-71232142:+|2.7895465092023453|0.0850561880170553|5.04|151.0|80|3|anti-sense REV__THE1B-int_dup1558|chr5:71230591-71232142:+|2.7895465092023453|0.0850561880170553|5.04|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 557.3115234375 2 557.796863 1113.57917 NaN NaN NaN NaN NaN NaN NaN 57.529 1 61.024 60.524 61.524 3.4942 0 0 0 0.38916 1 12473 12473 3.2813 0.28607 1 + 36395 32242 23034 23045 41579 41579 0.02692717374725362 RKQGRLKA 8 Unmodified _RKQGRLKA_ 0 0 0 REV__ENST00000584214.1_1_17:16253243-16256750:-|nuORF REV__ENST00000584214.1_1_17:16253243-16256750:-|nuORF MSMS UPN47_class_I_Rep_3 4 478.8100280761719 2 478.809242 955.603932 NaN NaN NaN NaN NaN NaN NaN 36.408 1 39.663 39.163 40.163 3.2547 0 0 0 0.40625 1 6861 6861 2.3027 0 1 + 36396 20183 23035 23046 41580 41580 0.12435397248077606 RKQGTVLVE 9 Unmodified _RKQGTVLVE_ 0 0 0 L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.3068237304688 2 515.306198 1028.59784 0.25635 0.0001321 0.24389 0.00012568 0.50025 0.00025778 515.3062980484322 87.585 0.63313 91.204 90.858 91.491 3.6187 102 69 2 0 0 0 0.46869 1 20952 20952 3.9444 3.9444 1 110030 36397 11509 23036 23047 41581 41581 0.08468834225891442 RKQGTVLVE 9 Unmodified _RKQGTVLVE_ 0 0 0 L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 515.306198 1028.59784 0.32595 0.00016797 0.34471 0.00017763 0.67067 0.0003456 515.30620327657 87.819 0.33965 91.206 91.147 91.487 3.3873 0.056945 0.00012155 NaN 3.9444 42 35 2 NaN NaN NaN NaN 0 NaN NaN 0 68115 36398 11509 23036 23047 0.08468834225891442 RKQGTVLVE 9 Unmodified _RKQGTVLVE_ 0 0 0 L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|10|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 515.306198 1028.59784 0.3399 0.00017515 0.022254 1.1467E-05 0.36215 0.00018662 515.3061690093482 87.321 0.10984 91.038 90.963 91.073 3.7171 -0.11112 -0.00021078 NaN 3.9444 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 141130 36399 11509 23036 23047 0.08468834225891442 RKQHPEHW 8 Unmodified _RKQHPEHW_ 0 0 0 L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|227|3|sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|227|3|sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|227|3|sense MSMS UPN46_class_I_Rep_3 1 559.2844848632812 2 559.286131 1116.55771 NaN NaN NaN NaN NaN NaN NaN 105.75 1 105.75 105.25 106.25 0 0 0 0 0.40746 1 25795 25795 0.69038 0 1 36400 14061 23037 23048 41582 41582 0.004093323459983367 RKQHPKIW 8 Unmodified _RKQHPKIW_ 0 0 0 LTR48_dup891|chr18:13482671-13483153:-|1.4043566631933|0.0457172158665398|4.94|151.0|5|2|sense LTR48_dup891|chr18:13482671-13483153:-|1.4043566631933|0.0457172158665398|4.94|151.0|5|2|sense LTR48_dup891|chr18:13482671-13483153:-|1.4043566631933|0.0457172158665398|4.94|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 546.82568359375 2 546.824892 1091.63523 NaN NaN NaN NaN NaN NaN NaN 14.671 1 18.325 17.825 18.825 3.6542 0 0 0 0.40746 1 484 484 0.69038 0 1 36401 15648 23038 23049 41583 41583 0.09307970282179667 RKQHSLLKRLR 11 Unmodified _RKQHSLLKRLR_ 0 0 0 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-SECPEP UPN48_class_I_Rep_1 5 478.8287658691406 3 478.975788 1433.90553 0.11074 5.3043E-05 -2.2186 -0.0010626 -2.1078 -0.0010096 478.97469861066844 49.68 0.33706 53.204 53.027 53.364 3.5246 23 20 2 0 0 0 22.551 1 10101 10101 1.3296 0.21989 1 112300 36402 2118 23039 23050 41584 41584 0.2059369854760007 RKQILLMM 8 Unmodified _RKQILLMM_ 0 0 0 REV__nc|ENSG00000117152|P49798-3|RGS4 REV__nc|ENSG00000117152|P49798-3|RGS4 MSMS UPN47_class_I_Rep_2 3 516.8063354492188 2 516.806465 1031.59838 NaN NaN NaN NaN NaN NaN NaN 47.909 1 51.258 50.758 51.758 3.3492 0 0 0 0.40738 1 10310 10310 0.79363 0 1 + 36403 31967 23040 23051 41585 41585 0.08384214349757713 RKQILLMM 8 Unmodified _RKQILLMM_ 0 0 0 REV__nc|ENSG00000117152|P49798-3|RGS4 REV__nc|ENSG00000117152|P49798-3|RGS4 MSMS UPN47_class_I_Rep_2 3 516.8058471679688 2 516.806465 1031.59838 NaN NaN NaN NaN NaN NaN NaN 106.78 1 110.31 109.81 110.81 3.5345 0 0 0 0.40746 1 25849 25849 0.69038 0 1 + 36404 31967 23040 23051 41586 41586 0.08384214349757713 RKQKKIPAAL 10 Unmodified _RKQKKIPAAL_ 0 0 0 ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF ENSG00000180263|ENST00000343958|FGD6 ENSG00000180263|ENST00000343958|FGD6 MSMS UPN46_class_I_Rep_3 1 576.7691650390625 2 576.882407 1151.75026 NaN NaN NaN NaN NaN NaN NaN 43.653 1 43.653 43.153 44.153 0 0 0 0 0.53105 1 8733 8733 1.6526 0 1 36405 4885 23041 23052 41587 41587 0.18045654693310098 RKQKQGSL 8 Unmodified _RKQKQGSL_ 0 0 0 L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|28|2|sense L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|28|2|sense L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|28|2|sense MSMS UPN47_class_I_Rep_3 4 472.33782958984375 2 472.785433 943.556313 NaN NaN NaN NaN NaN NaN NaN 82.022 1 85.359 84.859 85.859 3.337 0 0 0 0.40157 1 20549 20549 7.2892 0 1 36406 11455 23042 23053 41588 41588 0.08227698257235261 RKQKTQRAT 9 Unmodified _RKQKTQRAT_ 0 0 0 REV__nc|ENSG00000047056|Q9Y2I8-3|WDR37 REV__nc|ENSG00000047056|Q9Y2I8-3|WDR37 MSMS UPN48_class_I_Rep_2 6 558.833251953125 2 558.833446 1115.65234 NaN NaN NaN NaN NaN NaN NaN 118.96 1 122.63 122.13 123.13 3.6652 0 0 0 0.4007 1 28538 28538 0.52476 0 1 + 36407 17661 23043 23054 41589 41589 0.09913846097310852 RKQLGQTWEG 10 Unmodified _RKQLGQTWEG_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS UPN48_class_I_Rep_2 6 601.8179321289062 2 601.817461 1201.62037 NaN NaN NaN NaN NaN NaN NaN 77.715 1 81.337 80.837 81.837 3.6222 0 0 0 0.53105 1 18409 18409 1.4819 0.28856 1 + 36408 20254 23044 23055 41590 41590 0.027624336235248848 RKQLLKLK 8 Unmodified _RKQLLKLK_ 0 0 0 L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 513.8600463867188 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 16.099 1 19.596 19.096 20.096 3.4968 0 0 0 0.40746 1 975 975 0.69038 0 1 36409 9195 23045 23056 41591 41591 0.19550884635873444 RKQLLKLK 8 Unmodified _RKQLLKLK_ 0 0 0 L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 513.85986328125 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 16.248 1 19.61 19.11 20.11 3.3619 0 0 0 0.40746 1 981 981 0.69038 0 1 36410 9195 23045 23056 41592 41592 0.19550884635873444 RKQLLKLK 8 Unmodified _RKQLLKLK_ 0 0 0 L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 513.8598022460938 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 16.508 1 19.87 19.37 20.37 3.3619 0 0 0 0.40746 1 1041 1041 0.69038 0 1 36411 9195 23045 23056 41593 41593 0.19550884635873444 RKQLLKLK 8 Unmodified _RKQLLKLK_ 0 0 0 L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense L1M5_dup50940|chr19:29947446-29948252:-|1.7138082908809522|0.0255288956188581|6.07|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 513.8424682617188 2 513.860944 1025.70733 NaN NaN NaN NaN NaN NaN NaN 19.016 1 22.37 21.87 22.87 3.3545 0 0 0 0.40746 1 1699 1699 0.69038 0 1 36412 9195 23045 23056 41594 41594 0.19550884635873444 RKQLRLIHL 9 Unmodified _RKQLRLIHL_ 0 0 0 REV__L1MA1_dup1236|chr5:43460381-43462827:+|1.7541986688915605|0.2092975406299803|3.07|151.0|46|2|sense REV__L1MA1_dup1236|chr5:43460381-43462827:+|1.7541986688915605|0.2092975406299803|3.07|151.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 588.8880004882812 2 588.888024 1175.7615 NaN NaN NaN NaN NaN NaN NaN 44.375 1 44.375 43.875 44.875 0 0 0 0 0.4007 1 8939 8939 0.52476 0 1 + 36413 24749 23046 23057 41595 41595 0.1806447678745826 RKQNTAIL 8 Unmodified _RKQNTAIL_ 0 0 0 ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF MSMS UPN47_class_I_Rep_2 3 472.2873840332031 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.532 1 91.984 91.484 92.484 3.4525 0 0 0 0.40604 1 22013 22013 2.5775 0 1 36414 6427 23047 23058 41596 41596 0.08748582399982752 RKQNTAIL 8 Unmodified _RKQNTAIL_ 0 0 0 ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 472.2880859375 2 472.287808 942.561064 0.042141 1.9903E-05 -0.2265 -0.00010698 -0.18436 -8.7073E-05 472.28763453066136 86.963 0.31651 90.343 90.294 90.611 3.3801 72 40 2 0 0 0 0.82752 1 21852 21852 2.5775 0 1 375630 36415 6427 23047 23058 41597 41597 0.08748582399982752 RKQNTAIL 8 Unmodified _RKQNTAIL_ 0 0 0 ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 472.28790283203125 2 472.287808 942.561064 0.22647 0.00010696 -0.0092984 -4.3915E-06 0.21718 0.00010257 472.2876871840315 87.35 0.13466 91.14 91.063 91.198 3.7905 39 15 3 0 0 0 0.82752 1 20714 20714 2.5775 0 1 295450 36416 6427 23047 23058 41598 41598 0.08748582399982752 RKQQNEKMT 9 Unmodified _RKQQNEKMT_ 0 0 0 L1M3_dup1397|chr4:48765143-48766219:+|1.366960256405836|0.1227434873481819|3.48|151.0|28|3|sense L1M3_dup1397|chr4:48765143-48766219:+|1.366960256405836|0.1227434873481819|3.48|151.0|28|3|sense L1M3_dup1397|chr4:48765143-48766219:+|1.366960256405836|0.1227434873481819|3.48|151.0|28|3|sense MSMS UPN48_class_I_Rep_2 6 581.8057861328125 2 581.803497 1161.59244 NaN NaN NaN NaN NaN NaN NaN 101.64 1 105.36 104.86 105.86 3.7252 0 0 0 0.38784 1 24102 24102 3.5965 1.019 1 36417 8752 23048 23059 41599 41599 0.018107873717553957 RKQREEEQA 9 Unmodified _RKQREEEQA_ 0 0 0 REV__ENST00000527855.1_1_3:113697695-113720591:-|nuORF REV__ENST00000527855.1_1_3:113697695-113720591:-|nuORF MSMS UPN47_class_I_Rep_1 2 587.2999877929688 2 587.302175 1172.5898 NaN NaN NaN NaN NaN NaN NaN 37.956 1 41.621 41.121 42.121 3.6652 0 0 0 0.39598 1 7262 7262 1.6526 0 1 + 36418 19986 23049 23060 41600 41600 0.010406552384665702 RKQRPVPS 8 Unmodified _RKQRPVPS_ 0 0 0 REV__nc|ENSG00000140945|P55290-3|CDH13 REV__nc|ENSG00000140945|P55290-3|CDH13 MSMS UPN46_class_I_Rep_3 1 484.29522705078125 2 484.293425 966.572297 NaN NaN NaN NaN NaN NaN NaN 38.226 1 38.226 37.726 38.726 0 0 0 0 0.40643 1 7259 7259 2.0598 0 1 + 36419 19361 23050 23061 41601 41601 0.08767404494142284 RKQTHILFV 9 Unmodified _RKQTHILFV_ 0 0 0 L1PB4_dup6365|chr15:34194641-34195563:+|1.1855276830729662|0.0178683292476644|6.05|150.0|20|3|sense L1PB4_dup6365|chr15:34194641-34195563:+|1.1855276830729662|0.0178683292476644|6.05|150.0|20|3|sense L1PB4_dup6365|chr15:34194641-34195563:+|1.1855276830729662|0.0178683292476644|6.05|150.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 571.5568237304688 2 571.345658 1140.67676 NaN NaN NaN NaN NaN NaN NaN 84.082 1 84.082 83.582 84.582 0 0 0 0 0.40038 1 19991 19991 0.6015 0 1 36420 15338 23051 23062 41602 41602 0.11205106250849894 RKQTSRLDPH 10 Unmodified _RKQTSRLDPH_ 0 0 0 nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 MSMS UPN48_class_I_Rep_2 6 619.339111328125 2 619.341635 1236.66872 NaN NaN NaN NaN NaN NaN NaN 82.171 1 85.84 85.34 86.34 3.669 0 0 0 0.53105 1 19515 19515 1.3295 0 1 36421 3577 23052 23063 41603 41603 0.05984927263421014 RKQVMGLI 8 Unmodified _RKQVMGLI_ 0 0 0 ENST00000467302.5_1_1:109236213-109238974:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;PRPF38B|p.K487Tfs*4|1|0.03|ENSG00000134186|chr1:108699834-108699835|AA/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B ENST00000467302.5_1_1:109236213-109238974:+|nuORF ENST00000467302.5_1_1:109236213-109238974:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 472.28790283203125 2 472.78913 943.563706 0.24673 0.00011665 1.0681 0.00050498 1.3148 0.00062164 472.78976110241166 91.694 0.068558 91.694 91.635 91.704 0 6 5 2 0 0 0 0.72333 1 22154 22154 0.69038 0 1 42843 36422 2836 23053 23064 41604 41604 0.0896671453331237 RKQYKKKR 8 Unmodified _RKQYKKKR_ 0 0 0 REV__ENSG00000124383|ENST00000244230|MPHOSPH10 REV__ENSG00000124383|ENST00000244230|MPHOSPH10 MSMS UPN47_class_I_Rep_1 2 567.8654174804688 2 567.864549 1133.71454 NaN NaN NaN NaN NaN NaN NaN 46.131 1 49.831 49.331 50.331 3.6999 0 0 0 0.40625 1 9756 9756 2.3027 0.24298 1 + 36423 18807 23054 23065 41605 41605 0.15303617236327227 RKQYKKKR 8 Unmodified _RKQYKKKR_ 0 0 0 REV__ENSG00000124383|ENST00000244230|MPHOSPH10 REV__ENSG00000124383|ENST00000244230|MPHOSPH10 MSMS UPN47_class_I_Rep_3 4 567.865478515625 2 567.864549 1133.71454 NaN NaN NaN NaN NaN NaN NaN 46.439 1 49.682 49.182 50.182 3.2439 0 0 0 0.40746 1 9935 9935 0.69038 0 1 + 36424 18807 23054 23065 41606 41606 0.15303617236327227 RKQYLQRQ 8 Unmodified _RKQYLQRQ_ 0 0 0 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 MSMS UPN46_class_I_Rep_3 1 560.3228149414062 2 560.322714 1118.63087 NaN NaN NaN NaN NaN NaN NaN 87.298 1 87.298 86.798 87.798 0 0 0 0 0.40746 1 20909 20909 0.69038 0 1 36425 1351 23055 23066 41607 41607 0.07630461068606564 RKRAREQY 8 Unmodified _RKRAREQY_ 0 0 0 REV__nc|ENSG00000101746|O94818-4|NOL4 REV__nc|ENSG00000101746|O94818-4|NOL4 MSMS UPN47_class_I_Rep_2 3 553.8306884765625 2 553.812513 1105.61047 NaN NaN NaN NaN NaN NaN NaN 82.638 1 86.037 85.537 86.537 3.3984 0 0 0 0.4044 1 20599 20599 4.756 0.81161 1 + 36426 18173 23056 23067 41608 41608 0.06189290408792658 RKRCPISLF 9 Unmodified _RKRCPISLF_ 0 0 0 REV__HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|90|3|anti-sense REV__HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|90|3|anti-sense MSMS UPN47_class_I_Rep_3 4 560.7568969726562 2 560.326411 1118.63827 NaN NaN NaN NaN NaN NaN NaN 57.159 1 60.327 59.827 60.827 3.1681 0 0 0 0.38478 1 13189 13189 4.3292 0.38484 1 + 36427 23809 23057 23068 41609 41609 0.08369477344672305 RKRDKRSRH 9 Unmodified _RKRDKRSRH_ 0 0 0 nc|ENSG00000134324|Q14693-6|LPIN1;nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693-6|LPIN1 nc|ENSG00000134324|Q14693-6|LPIN1 MSMS UPN46_class_I_Rep_3 1 619.8694458007812 2 619.868686 1237.72282 NaN NaN NaN NaN NaN NaN NaN 92.992 1 92.992 92.492 93.492 0 0 0 0 0.40098 1 22524 22524 0.45834 0 1 36428 2845 23058 23069 41610 41610 0.11346564205632603 RKREEEIR 8 Unmodified _RKREEEIR_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MSMS UPN48_class_I_Rep_3 7 558.3165893554688 2 558.317628 1114.6207 NaN NaN NaN NaN NaN NaN NaN 90.495 1 94.342 93.842 94.842 3.847 0 0 0 0.40472 1 21476 21476 4.3292 0 1 36429 2818 23059 23070 41611 41611 0.06797853343368843 RKRGGEVL 8 Unmodified _RKRGGEVL_ 0 0 0 ENST00000282570.3_1_2:70056794-70056833:+|nuORF;MSTA_dup17640|chr17:72784510-72784847:+|1.0943992934207951|0.0028126142736191|8.6|151.0|23|3|anti-sense ENST00000282570.3_1_2:70056794-70056833:+|nuORF ENST00000282570.3_1_2:70056794-70056833:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 457.7803039550781 2 457.780151 913.545748 0.12019 5.5022E-05 0.1117 5.1133E-05 0.23189 0.00010616 457.78018682324137 81.367 0.8962 84.854 84.512 85.408 3.4874 131 94 2 0 0 0 0.82752 1 20274 20274 2.3027 0 1 142790 36430 6034 23060 23071 41612 41612 0.08551715602823151 RKRGPHPF 8 Unmodified _RKRGPHPF_ 0 0 0 REV__L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|30|2|sense REV__L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|30|2|sense MSMS UPN48_class_I_Rep_3 7 497.7873229980469 2 497.78831 993.562067 NaN NaN NaN NaN NaN NaN NaN 25.074 1 28.843 28.343 29.343 3.769 0 0 0 0.40738 1 2998 2998 0.79363 0 1 + 36431 25427 23061 23072 41613 41613 0.06502841559563421 RKRGPRQANR 10 Unmodified _RKRGPRQANR_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1;ENST00000476339.1_1_5:140896420-140903812:-|nuORF;ENST00000468119.3_1_5:140896420-140904324:-|nuORF nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS UPN46_class_I_Rep_3 1 620.3720092773438 2 619.868686 1237.72282 0.65578 0.0004065 0.97009 0.00060133 1.6259 0.0010078 619.8692225564062 90.344 0.14626 90.344 90.279 90.425 0 25 13 2 0 0 0 0.56486 1 21774 21774 0.40072 0.40072 1 313340 36432 2716 23062 23073 41614 41614 0.11346564205632603 RKRHIHLFNT 10 Unmodified _RKRHIHLFNT_ 0 0 0 LTR48B_dup359|chr5:76923834-76924449:+|1.2637681584579643|0.0011401506734291|10.11|148.0|34|2|anti-sense LTR48B_dup359|chr5:76923834-76924449:+|1.2637681584579643|0.0011401506734291|10.11|148.0|34|2|anti-sense LTR48B_dup359|chr5:76923834-76924449:+|1.2637681584579643|0.0011401506734291|10.11|148.0|34|2|anti-sense MSMS UPN46_class_I_Rep_3 1 441.2580261230469 3 441.258184 1320.75272 NaN NaN NaN NaN NaN NaN NaN 32.676 1 32.676 32.176 33.176 0 0 0 0 0.53105 1 5622 5622 0.77653 0 1 36433 15650 23063 23074 41615 41615 0.10517503150981611 RKRIARTVLVL 11 Unmodified _RKRIARTVLVL_ 0 0 0 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 MSMS UPN47_class_I_Rep_2 3 442.3009338378906 3 442.301501 1323.88267 NaN NaN NaN NaN NaN NaN NaN 102.01 1 105.53 105.03 106.03 3.5151 0 0 0 0.38417 1 24856 24856 1.4551 0.94916 1 36434 1608 23064 23075 41616 41616 0.23368679430109296 RKRKEEEKWKR 11 Unmodified _RKRKEEEKWKR_ 0 0 0 REV__ENST00000478840.1_1_X:118974578-118977244:-|nuORF REV__ENST00000478840.1_1_X:118974578-118977244:-|nuORF MSMS UPN46_class_I_Rep_3 1 524.974365234375 3 524.974224 1571.90084 NaN NaN NaN NaN NaN NaN NaN 47.333 1 47.333 46.833 47.833 0 0 0 0 0.38417 1 9778 9778 0.094841 0 1 + 36435 18825 23065 23076 41617 41617 0.13776769614150908 RKRKEKKTRSN 11 Unmodified _RKRKEKKTRSN_ 0 0 0 REV__L1ME4a_dup3719|chr2:71650944-71652041:+|1.068700839761371|0.0441961268402035|4.6|149.0|32|3|sense REV__L1ME4a_dup3719|chr2:71650944-71652041:+|1.068700839761371|0.0441961268402035|4.6|149.0|32|3|sense MSMS UPN48_class_I_Rep_1 5 477.96185302734375 3 477.626936 1429.85898 NaN NaN NaN NaN NaN NaN NaN 98.902 1 102.51 102.01 103.01 3.6065 0 0 0 0.38417 1 23872 23872 0.50596 0.051438 1 + 36436 28235 23066 23077 41618 41618 0.1612421392565011 RKRKGFLK 8 Unmodified _RKRKGFLK_ 0 0 0 LTR9C_dup95|chr10:121890988-121891623:-|1.1325923327022696|0.1142448546686766|3.31|151.0|21|1|anti-sense LTR9C_dup95|chr10:121890988-121891623:-|1.1325923327022696|0.1142448546686766|3.31|151.0|21|1|anti-sense LTR9C_dup95|chr10:121890988-121891623:-|1.1325923327022696|0.1142448546686766|3.31|151.0|21|1|anti-sense MSMS UPN46_class_I_Rep_3 1 516.8056640625 2 516.843085 1031.67162 NaN NaN NaN NaN NaN NaN NaN 99.573 1 99.573 99.073 100.07 0 0 0 0 0.40746 1 24262 24262 0.69038 0 1 36437 15734 23067 23078 41619 41619 0.1570484717888121 RKRKKGVV 8 Unmodified _RKRKKGVV_ 0 0 0 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 REV__nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS UPN47_class_I_Rep_1 2 485.8369140625 2 485.83526 969.655967 NaN NaN NaN NaN NaN NaN NaN 29.302 1 33.06 32.56 33.56 3.7578 0 0 0 0.40746 1 4635 4635 0.69038 0 1 + 36438 18136 23068 23079 41620 41620 0.1699256066185626 RKRKKTHTIGK 11 Unmodified _RKRKKTHTIGK_ 0 0 0 L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|29|2|sense L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|29|2|sense L1ME1_dup26129|chr15:85634569-85636615:-|1.5221751674387247|0.0496879629660052|4.94|151.0|29|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 451.6247253417969 3 451.624755 1351.85244 0.072864 3.2907E-05 -0.29783 -0.00013451 -0.22496 -0.0001016 451.62444411137926 44.84 0.22982 48.602 48.445 48.675 3.7617 27 16 2 0 0 0 22.551 1 8583 8583 0.32927 0.23443 1 100640 36439 12339 23069 23080 41621 41621 0.19058320764906966 RKRKRRGLF 9 Unmodified _RKRKRRGLF_ 0 0 0 ENST00000327111.7_1_5:92919409-92919580:+|nuORF ENST00000327111.7_1_5:92919409-92919580:+|nuORF ENST00000327111.7_1_5:92919409-92919580:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.26708984375 3 406.266902 1215.77888 -0.094906 -3.8557E-05 0.14434 5.864E-05 0.049433 2.0083E-05 406.2669757270789 34.911 0.26866 38.425 38.356 38.625 3.5144 36 26 2 0 0 0 0.49458 1 5657 5657 1.1933 0.41681 1 135000 36440 6173 23070 23081 41622 41622 0.17961817113132383 RKRKYNWS 8 Unmodified _RKRKYNWS_ 0 0 0 ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF ENSG00000145592|ENST00000274242|RPL37 ENSG00000145592|ENST00000274242|RPL37 MSMS UPN48_class_I_Rep_2 6 569.3165893554688 2 569.317432 1136.62031 NaN NaN NaN NaN NaN NaN NaN 28.934 1 32.566 32.066 33.066 3.6316 0 0 0 0.40625 1 4044 4044 2.3027 0.4585 1 36441 3402 23071 23082 41623 41623 0.05746478414152989 RKRLLPKRC 9 Unmodified _RKRLLPKRC_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN47_class_I_Rep_2 3 585.374755859375 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 22.619 1 26.064 25.564 26.564 3.4447 0 0 0 0.4029 1 2714 2714 0 0 1 36442 4073 23072 23083 41624 41624 0.15628250255599596 RKRLLPKRC 9 Unmodified _RKRLLPKRC_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN47_class_I_Rep_2 3 585.374267578125 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 26.003 1 29.497 28.997 29.997 3.4945 0 0 0 0.4029 1 3698 3698 0 0 1 36443 4073 23072 23083 41625 41625 0.15628250255599596 RKRLLPKRC 9 Unmodified _RKRLLPKRC_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN47_class_I_Rep_3 4 585.374267578125 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 25.158 1 28.509 28.009 29.009 3.3509 0 0 0 0.4029 1 3492 3492 0 0 1 36444 4073 23072 23083 41626 41626 0.15628250255599596 RKRLLPKRC 9 Unmodified _RKRLLPKRC_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN48_class_I_Rep_1 5 585.3753051757812 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 56.782 1 60.284 59.784 60.784 3.5014 0 0 0 0.4029 1 12247 12247 0 0 1 36445 4073 23072 23083 41627 41627 0.15628250255599596 RKRLLPKRC 9 Unmodified _RKRLLPKRC_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN48_class_I_Rep_2 6 585.3748779296875 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 22.892 1 26.536 26.036 27.036 3.6432 0 0 0 0.4029 1 2408 2408 0 0 1 36446 4073 23072 23083 41628 41628 0.15628250255599596 RKRLLPKRC 9 Unmodified _RKRLLPKRC_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN48_class_I_Rep_2 6 585.3751220703125 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 25.034 1 28.67 28.17 29.17 3.6363 0 0 0 0.4029 1 2992 2992 0 0 1 36447 4073 23072 23083 41629 41629 0.15628250255599596 RKRLQPAKIT 10 Unmodified _RKRLQPAKIT_ 0 0 0 AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense AluSq2_dup29677|chr9:90876004-90876317:+|1.2305421966269443|0.0313603798787339|5.29|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 404.26361083984375 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 71.588 1 71.588 71.088 72.088 0 0 0 0 0.53105 1 16500 16500 0.56317 0.1965 1 36448 253 23073 23084 41630 41630 0.1704815557927759 RKRLRFCFL 9 Unmodified _RKRLRFCFL_ 0 0 0 REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 620.3710327148438 2 619.868777 1237.723 0.65609 0.00040669 1.1368 0.00070464 1.7928 0.0011113 620.371259269524 88.381 0.093933 88.381 88.327 88.421 0 14 9 2 0 0 0 0.12527 1 21214 21214 0 0 1 145230 + 36449 19983 23074 23085 41631 41631 0.1136484788130474 RKRLYFKRKR 10 Unmodified _RKRLYFKRKR_ 0 0 0 REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF REV__ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS UPN47_class_I_Rep_3 4 484.3118896484375 3 484.312511 1449.9157 NaN NaN NaN NaN NaN NaN NaN 111.99 1 115.51 115.01 116.01 3.5207 0 0 0 0.53105 1 27500 27500 0.15932 0.064481 1 + 36450 21831 23075 23086 41632 41632 0.2087430627282174 RKRNWIFA 8 Unmodified _RKRNWIFA_ 0 0 0 REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|25|1|sense REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|25|1|sense MSMS UPN47_class_I_Rep_1 2 545.8182373046875 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 111.29 1 114.86 114.36 115.36 3.572 0 0 0 0.40738 1 27446 27446 0.79363 0.10326 1 + 36451 29784 23076 23087 41633 41633 0.07835683765119938 RKRNWIFA 8 Unmodified _RKRNWIFA_ 0 0 0 REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|25|1|sense REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|25|1|sense MSMS UPN48_class_I_Rep_3 7 545.8190307617188 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 26.552 1 30.319 29.819 30.819 3.7663 0 0 0 0.40738 1 3376 3376 0.79363 0 1 + 36452 29784 23076 23087 41634 41634 0.07835683765119938 RKRPDEVPD 9 Unmodified _RKRPDEVPD_ 0 0 0 nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF nc|ENSG00000156642|Q9Y639-3|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN MSMS UPN47_class_I_Rep_2 3 556.296630859375 2 556.296362 1110.57817 NaN NaN NaN NaN NaN NaN NaN 86.07 1 89.503 89.003 90.003 3.4329 0 0 0 0.39428 1 21410 21410 2.0598 0.86641 1 36453 3736 23077 23088 41635 41635 0.027304582151373324 RKRQEAQME 9 Unmodified _RKRQEAQME_ 0 0 0 ENSG00000100557|ENST00000216445|CCDC198 ENSG00000100557|ENST00000216445|CCDC198 ENSG00000100557|ENST00000216445|CCDC198 MULTI-MSMS UPN48_class_I_Rep_2 6 588.8023681640625 2 588.301121 1174.58769 0.45008 0.00026478 -0.038995 -2.2941E-05 0.41109 0.00024184 588.3010185251127 37.011 0.32284 40.714 40.614 40.937 3.7021 46 34 2 0 0 0 0.43982 1 6266 6266 5.7319 0 1 129320 36454 1514 23078 23089 41636 41636 0.007379032289918541 RKRQKNVF 8 Unmodified _RKRQKNVF_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-MSMS UPN46_class_I_Rep_3 1 538.3273315429688 2 538.327799 1074.64105 0.35603 0.00019166 -1.3963 -0.00075169 -1.0403 -0.00056003 538.3270029923259 96.537 0.14732 96.537 96.501 96.649 0 26 17 2 0 0 0 0.82752 1 23481 23481 0.69038 0 1 203530 + 36455 17909 23079 23090 41637 41637 0.10671068793840277 RKRQKNVF 8 Unmodified _RKRQKNVF_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-MSMS UPN48_class_I_Rep_3 7 538.3277587890625 2 538.327799 1074.64105 0.57166 0.00030774 -2.4917 -0.0013414 -1.9201 -0.0010336 538.3270242317177 110.99 0.18608 114.66 114.61 114.8 3.6654 28 22 2 0 0 0 0.82752 1 26338 26338 0.69038 0 1 117140 + 36456 17909 23079 23090 41638 41638 0.10671068793840277 RKRQKNVF 8 Unmodified _RKRQKNVF_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-MATCH UPN47_class_I_Rep_2 3 2 538.327799 1074.64105 0.58194 0.00031327 -1.5888 -0.00085531 -1.0069 -0.00054203 538.3276546198344 111.05 0.054161 114.57 114.55 114.6 3.5271 -0.043952 0.00075541 NaN 0.69038 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 115270 + 36457 17909 23079 23090 0.10671068793840277 RKRQKNVF 8 Unmodified _RKRQKNVF_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-MATCH UPN47_class_I_Rep_3 4 2 538.327799 1074.64105 0.48027 0.00025854 -1.4365 -0.00077331 -0.95623 -0.00051476 538.3269794625646 93.151 0.33605 96.556 96.515 96.851 3.4052 -0.038902 8.0012E-05 NaN 0.69038 67 47 2 NaN NaN NaN NaN 0 NaN NaN 0 123930 + 36458 17909 23079 23090 0.10671068793840277 RKRQKNVF 8 Unmodified _RKRQKNVF_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-MATCH UPN48_class_I_Rep_1 5 2 538.327799 1074.64105 0.35712 0.00019225 -1.4178 -0.00076327 -1.0607 -0.00057102 538.3269888580031 93.038 0.17876 96.662 96.625 96.803 3.624 0.066846 0.00010009 NaN 0.69038 41 22 2 NaN NaN NaN NaN 0 NaN NaN 0 145610 + 36459 17909 23079 23090 0.10671068793840277 RKRQKNVF 8 Unmodified _RKRQKNVF_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-MATCH UPN48_class_I_Rep_3 7 2 538.327799 1074.64105 0.57838 0.00031136 -1.6083 -0.00086579 -1.0299 -0.00055443 538.3269072360686 92.748 0.31702 96.626 96.546 96.863 3.8782 0.030686 -0.00010495 NaN 0.69038 66 45 2 NaN NaN NaN NaN 0 NaN NaN 0 211070 + 36460 17909 23079 23090 0.10671068793840277 RKRRGGGG 8 Unmodified _RKRRGGGG_ 0 0 0 ENST00000605920.1_1_10:81586022-81586202:+|nuORF REV__L1PA11_dup2847|chr10:96047775-96048447:-|1.8162207500744032|0.0374100114096025|5.6|151.0|5|1|sense REV__L1PA11_dup2847|chr10:96047775-96048447:-|1.8162207500744032|0.0374100114096025|5.6|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 421.7513427734375 2 422.254634 842.494716 -0.58636 -0.0002476 -0.62619 -0.00026441 -1.2126 -0.00051201 422.25333271590944 68.883 0.094902 72.081 72.049 72.144 3.1977 10 7 2 0 0 0 0.72333 1 16770 16770 0.69038 0 1 29255 36461 7679 23080 23091 41639 41639 0.067168113486332 RKRRGGGG 8 Unmodified _RKRRGGGG_ 0 0 0 ENST00000605920.1_1_10:81586022-81586202:+|nuORF REV__L1PA11_dup2847|chr10:96047775-96048447:-|1.8162207500744032|0.0374100114096025|5.6|151.0|5|1|sense REV__L1PA11_dup2847|chr10:96047775-96048447:-|1.8162207500744032|0.0374100114096025|5.6|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 422.254634 842.494716 -0.040885 -1.7264E-05 -1.1066 -0.00046726 -1.1475 -0.00048452 422.2529749783981 69.094 0.12393 72.462 72.381 72.505 3.3678 0.1905 -0.00020468 NaN 0.69038 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 89992 36462 7679 23080 23091 0.067168113486332 RKRRKPRM 8 Unmodified _RKRRKPRM_ 0 0 0 REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.359619140625 2 564.356368 1126.69818 NaN NaN NaN NaN NaN NaN NaN 89.486 1 89.486 88.986 89.986 0 0 0 0 0.40738 1 21529 21529 0.79363 0 1 + 36463 22011 23081 23092 41640 41640 0.13990212798580615 RKRRKPRM 8 Unmodified _RKRRKPRM_ 0 0 0 REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF REV__ENST00000375608.7_2_13:113548693-113669133:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3583374023438 2 564.356368 1126.69818 NaN NaN NaN NaN NaN NaN NaN 89.695 1 89.695 89.195 90.195 0 0 0 0 0.40746 1 21590 21590 0.69038 0.088878 1 + 36464 22011 23081 23092 41641 41641 0.13990212798580615 RKRRMGKGTK 10 Unmodified _RKRRMGKGTK_ 0 0 0 REV__L1M7_dup1807|chr8:144752613-144752989:+|1.1947335693420549|0.2538586750309733|2.23|151.0|8|2|sense REV__L1M7_dup1807|chr8:144752613-144752989:+|1.1947335693420549|0.2538586750309733|2.23|151.0|8|2|sense MSMS UPN48_class_I_Rep_1 5 406.5838928222656 3 406.583902 1216.72988 NaN NaN NaN NaN NaN NaN NaN 104.65 1 108.28 107.78 108.78 3.6247 0 0 0 0.53105 1 25214 25214 0.62683 0 1 + 36465 24732 23082 23093 41642 41642 0.13018160761862418 RKRRRKRQRS 10 Unmodified _RKRRRKRQRS_ 0 0 0 REV__ENST00000319296.9_1_16:30419378-30419444:+|nuORF REV__ENST00000319296.9_1_16:30419378-30419444:+|nuORF MSMS UPN47_class_I_Rep_2 3 476.3064880371094 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 85.421 1 88.854 88.354 89.354 3.4329 0 0 0 0.53105 1 21250 21250 0.15932 0 1 + 36466 21729 23083 23094 41643 41643 0.20184984070692735 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN47_class_I_Rep_1 2 491.2991638183594 3 491.299153 1470.87563 0.2699 0.0001326 0.15413 7.5722E-05 0.42403 0.00020833 491.2991209212414 106 0.89292 109.71 109.39 110.28 3.7088 344 128 4 0 0 0 0.68081 2 26090 25927;26090 0.45452 0 1 2970300 + 36467 31992 23084 23095 41644;41645 41645 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN47_class_I_Rep_2 3 491.2994079589844 3 491.299153 1470.87563 0.48781 0.00023966 -0.043919 -2.1577E-05 0.44389 0.00021808 491.299026763051 106.01 0.87233 109.55 109.26 110.13 3.5345 389 130 4 0 0 0 0.68081 4 25737 25663;25737;25763;25793 0.45452 0.35968 1 2944700 + 36468 31992 23084 23095 41646;41647;41648;41649 41647 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN47_class_I_Rep_3 4 491.2993469238281 3 491.299153 1470.87563 0.26705 0.0001312 0.2198 0.00010799 0.48685 0.00023919 491.29914869847454 106.04 0.81331 109.58 109.32 110.13 3.5367 315 121 4 0 0 0 0.68081 3 25970 25887;25970;25994 0.45452 0.45452 1 2244700 + 36469 31992 23084 23095 41650;41651;41652 41651 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN48_class_I_Rep_1 5 491.2991943359375 3 491.299153 1470.87563 0.1568 7.7038E-05 0.0090888 4.4653E-06 0.16589 8.1503E-05 491.29894294746526 106.79 0.2558 110.42 110.34 110.6 3.6299 76 33 3 0 0 0 0.68081 1 25736 25736 0.45452 0.046251 1 371130 + 36470 31992 23084 23095 41653 41653 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-SECPEP UPN48_class_I_Rep_1 5 491.29937744140625 3 491.299153 1470.87563 0.15639 7.6836E-05 0.10675 5.2448E-05 0.26315 0.00012928 491.2991282933462 107 0.14902 110.63 110.58 110.72 3.6299 27 17 2 0 0 0 22.551 1 25769 25769 0.094841 0 1 379930 + 36471 31992 23084 23095 41654 41654 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN48_class_I_Rep_2 6 491.29925537109375 3 491.299153 1470.87563 0.26598 0.00013067 0.22964 0.00011282 0.49562 0.0002435 491.2990706977427 106.31 0.48614 110 109.94 110.42 3.6834 107 70 3 0 0 0 0.68478 2 25134 25134;25215 0.094841 0.011491 1 391750 + 36472 31992 23084 23095 41655;41656 41655 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN48_class_I_Rep_2 6 491.2988586425781 3 491.299153 1470.87563 0.2656 0.00013049 0.014467 7.1077E-06 0.28007 0.0001376 491.29908283130203 106.81 0.31293 110.48 110.42 110.73 3.6783 66 46 2 0 0 0 0.68081 1 25240 25240 0.45452 0.046251 1 195750 + 36473 31992 23084 23095 41657 41657 0.15902759602249716 RKRRRWNKKSG 11 Unmodified _RKRRRWNKKSG_ 0 0 0 REV__nc|ENSG00000137309|P17096-3|HMGA1 REV__nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS UPN48_class_I_Rep_3 7 491.63323974609375 3 491.299153 1470.87563 0.24249 0.00011914 -0.10154 -4.9888E-05 0.14095 6.9247E-05 491.2989129843261 106.89 0.23975 110.58 110.53 110.77 3.6899 62 35 2 0 0 0 0.68478 1 25234 25234 0.094841 0 1 213750 + 36474 31992 23084 23095 41658 41658 0.15902759602249716 RKRSPRQPV 9 Unmodified _RKRSPRQPV_ 0 0 0 REV__ENST00000379096.9_2_8:80976729-80976804:-|nuORF REV__ENST00000379096.9_2_8:80976729-80976804:-|nuORF MSMS UPN48_class_I_Rep_1 5 562.0233154296875 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 81.713 1 85.288 84.788 85.788 3.5753 0 0 0 0.37692 1 19493 19493 6.2058 1.4498 1 + 36475 22039 23085 23096 41659 41659 0.11697856196838075 RKRTEHWRLVN 11 Unmodified _RKRTEHWRLVN_ 0 0 0 L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|13|1|sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|13|1|sense L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 498.95123291015625 3 498.951531 1493.83276 NaN NaN NaN NaN NaN NaN NaN 57.677 1 57.677 57.177 58.177 0 0 0 0 0.38417 1 12652 12652 0.50596 0 1 36476 8953 23086 23097 41660 41660 0.10559944754163553 RKRTITAA 8 Unmodified _RKRTITAA_ 0 0 0 REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 458.78814697265625 2 458.787976 915.561398 0.055154 2.5304E-05 -0.047085 -2.1602E-05 0.0080694 3.7021E-06 458.78789398961914 84.056 0.66753 87.653 87.636 88.303 3.5973 203 87 4 0 0 0 0.82752 2 20201 20201;20238 0.69038 0.69038 1 3047000 + 36477 21997 23087 23098 41661;41662 41661 0.10024002119837405 RKRTITAA 8 Unmodified _RKRTITAA_ 0 0 0 REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 458.787976 915.561398 0.209 9.5888E-05 -0.42924 -0.00019693 -0.22024 -0.00010104 458.7877271196988 87.739 0.20693 87.739 87.693 87.899 0 0.10326 -0.00025252 NaN 0.69038 67 23 3 NaN NaN NaN NaN 0 NaN NaN 0 6054200 + 36478 21997 23087 23098 0.10024002119837405 RKRTITAA 8 Unmodified _RKRTITAA_ 0 0 0 REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 458.787976 915.561398 0.1388 6.3678E-05 -0.22938 -0.00010523 -0.09058 -4.1557E-05 458.78781572501157 84.09 0.80389 87.656 87.244 88.048 3.5655 0.020159 -6.9128E-05 NaN 0.69038 325 99 4 NaN NaN NaN NaN 0 NaN NaN 0 3388300 + 36479 21997 23087 23098 0.10024002119837405 RKRTITAA 8 Unmodified _RKRTITAA_ 0 0 0 REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF REV__ENST00000374213.2_1_1:26646794-26646881:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 458.787976 915.561398 -0.10967 -5.0314E-05 0.24503 0.00011242 0.13536 6.2103E-05 458.78791173077957 84.182 1.3246 87.544 86.82 88.144 3.3615 -0.091342 0.00036618 NaN 0.69038 413 159 4 NaN NaN NaN NaN 0 NaN NaN 0 3449500 + 36480 21997 23087 23098 0.10024002119837405 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.6498718261719 3 511.650075 1531.92839 0.31381 0.00016056 -0.28122 -0.00014389 0.032582 1.6671E-05 511.6497727887814 107.17 0.53719 110.71 110.37 110.91 3.5345 232 77 4 0 0 0 0.65891 1 25925 25925 2.4348 2.4348 1 1631900 36481 11679 23088 23099 41663 41663 0.1837071766506142 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.6499328613281 3 511.650075 1531.92839 0.33046 0.00016908 -0.14948 -7.6483E-05 0.18098 9.2598E-05 511.98435057342294 107.15 0.41688 110.68 110.42 110.84 3.5382 206 58 4 0 0 0 0.6724 2 26158 26133;26158 1.2148 0.10508 1 2682600 36482 11679 23088 23099 41664;41665 41665 0.1837071766506142 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.6499938964844 3 511.650075 1531.92839 0.23213 0.00011877 -0.22769 -0.0001165 0.0044405 2.272E-06 511.6498999077552 107 0.39488 110.63 110.58 110.97 3.6299 173 43 5 0 0 0 0.67356 3 25787 25787;25819;25868 1.1098 0.70149 1 4481500 36483 11679 23088 23099 41666;41667;41668 41666 0.1837071766506142 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 511.650075 1531.92839 0.36342 0.00018595 -0.32743 -0.00016753 0.035994 1.8417E-05 511.64977920024387 107.14 0.52351 110.81 110.44 110.96 3.6724 0.017825 -9.5803E-05 NaN 2.4348 240 70 4 NaN NaN NaN NaN 0 NaN NaN 0 1964400 36484 11679 23088 23099 0.1837071766506142 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 511.650075 1531.92839 0.23213 0.00011877 -0.22769 -0.0001165 0.0044405 2.272E-06 511.6498999077552 107 0.39488 110.63 110.58 110.97 3.6299 0.12992 9.491E-05 NaN 1.1098 173 43 5 NaN NaN NaN NaN 0 NaN NaN 0 4481500 36485 11679 23088 23099 0.1837071766506142 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 511.650075 1531.92839 0.32231 0.00016491 -0.00062955 -3.2211E-07 0.32168 0.00016459 511.9845334254586 107.4 0.037468 111.08 111.06 111.1 3.6783 0.28085 0.00040582 NaN 2.4348 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 635160 36486 11679 23088 23099 0.1837071766506142 RKRTVYRKRNR 11 Unmodified _RKRTVYRKRNR_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 511.650075 1531.92839 0.29808 0.00015251 -0.12585 -6.4389E-05 0.17224 8.8125E-05 511.6497423498804 107.31 0.079697 110.99 110.96 111.04 3.6813 0.19457 0.00021362 NaN 2.4348 7 4 3 NaN NaN NaN NaN 0 NaN NaN 0 197090 36487 11679 23088 23099 0.1837071766506142 RKRVHNRK 8 Unmodified _RKRVHNRK_ 0 0 0 ENST00000344922.9_2_1:222839752-222839908:+|nuORF ENST00000344922.9_2_1:222839752-222839908:+|nuORF ENST00000344922.9_2_1:222839752-222839908:+|nuORF MSMS UPN48_class_I_Rep_2 6 547.3328247070312 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 89.107 1 92.845 92.345 93.345 3.7379 0 0 0 0.40604 1 21218 21218 2.5775 0 1 36488 6258 23089 23100 41669 41669 0.13144695636560755 RKRVRPMH 8 Unmodified _RKRVRPMH_ 0 0 0 REV__HERVH-int_dup1015|chr3:32461948-32463605:-|2.8765103062045223|0.0884572891259589|5.02|151.0|27|2|sense REV__HERVH-int_dup1015|chr3:32461948-32463605:-|2.8765103062045223|0.0884572891259589|5.02|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.321994 1078.62944 NaN NaN NaN NaN NaN NaN NaN 40.066 1 40.066 39.566 40.566 0 0 0 0 0.40746 1 7752 7752 0.69038 0 1 + 36489 23650 23090 23101 41670 41670 0.09326548498847842 RKRWDIQRI 9 Unmodified _RKRWDIQRI_ 0 0 0 ENST00000339569.9_1_17:38287776-38290619:+|nuORF;nc|ENSG00000188895|Q68DK7-3|MSL1;nc|ENSG00000188895|Q68DK7-2|MSL1;ENSG00000188895|ENST00000398532|MSL1 ENST00000339569.9_1_17:38287776-38290619:+|nuORF ENST00000339569.9_1_17:38287776-38290619:+|nuORF MSMS UPN47_class_I_Rep_2 3 635.8797607421875 2 635.878188 1269.74182 NaN NaN NaN NaN NaN NaN NaN 112.21 1 115.73 115.23 116.23 3.5226 0 0 0 0.4007 1 27326 27326 0.52476 0 1 36490 5262 23091 23102 41671 41671 0.11774100776688101 RKSIQSGERAE 11 Unmodified _RKSIQSGERAE_ 0 0 0 LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|12|2|sense LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|12|2|sense LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 420.8946228027344 3 420.893347 1259.65821 NaN NaN NaN NaN NaN NaN NaN 91.681 1 95.082 94.582 95.582 3.401 0 0 0 0.38417 1 22917 22917 6.2344 0.83165 1 36491 15706 23092 23103 41672 41672 0.03876899818351376 RKSKKHKHRRH 11 Unmodified _RKSKKHKHRRH_ 0 0 0 REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF MSMS UPN48_class_I_Rep_2 6 499.78680419921875 3 499.974781 1496.90251 NaN NaN NaN NaN NaN NaN NaN 37.048 1 40.75 40.25 41.25 3.7021 0 0 0 0.38417 1 6295 6295 0.094841 0 1 + 36492 19506 23093 23104 41673 41673 0.1739386821343487 RKSPAPPLLSV 11 Unmodified _RKSPAPPLLSV_ 0 0 0 ENSG00000127191.18,TRAF2,chr9,+,I14.1,136916678,136920233|24|5.82|3|intron ENSG00000127191.18,TRAF2,chr9,+,I14.1,136916678,136920233|24|5.82|3|intron ENSG00000127191.18,TRAF2,chr9,+,I14.1,136916678,136920233|24|5.82|3|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 582.3513793945312 2 582.858598 1163.70264 0.48034 0.00027997 -4.3446 -0.0025323 -3.8642 -0.0022523 582.8561628896077 107.48 0.28896 111.16 110.99 111.28 3.6783 46 36 2 0 0 0 22.551 1 25380 25380 11.495 6.5977 1 3881700 36493 2565 23094 23105 41674 41674 0.12733955702469757 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.361083984375 2 606.360973 1210.70739 0.42528 0.00025788 0.29178 0.00017692 0.71706 0.0004348 606.3611046176701 33.608 0.08493 33.608 33.595 33.68 0 10 5 3 0 0 0 0.52083 1 5914 5914 9.3831 1.2276 1 363500 36494 6527 23095 23106 41675 41675 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.36083984375 2 606.360973 1210.70739 0.60669 0.00036787 0.44611 0.0002705 1.0528 0.00063838 606.3607406504002 109.48 0.28259 109.48 109.35 109.63 0 49 23 3 0 0 0 0.52083 1 26887 26887 9.3831 0.63772 1 3238400 36495 6527 23095 23106 41676 41676 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.3607177734375 2 606.360973 1210.70739 0.60693 0.00036802 0.62368 0.00037818 1.2306 0.0007462 606.3606891550822 109.69 0.56599 109.69 109.56 110.13 0 113 46 3 0 0 0 0.52083 1 26992 26992 9.3831 1.2276 1 4091400 36496 6527 23095 23106 41677 41677 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 606.361083984375 2 606.360973 1210.70739 0.5293 0.00032094 0.94449 0.0005727 1.4738 0.00089365 606.3610154830056 108.65 0.44345 112.28 112.17 112.62 3.6355 146 45 4 0 0 0 0.52083 1 26730 26730 9.3831 0.63772 1 73343000 36497 6527 23095 23106 41678 41678 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 606.361328125 2 606.360973 1210.70739 0.6349 0.00038498 1.0009 0.00060689 1.6358 0.00099187 606.3609626437168 108.66 0.66357 112.19 112.08 112.74 3.5333 239 78 4 0 0 0 0.52083 1 26387 26387 9.3831 1.7742 1 60102000 36498 6527 23095 23106 41679 41679 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 606.361328125 2 606.360973 1210.70739 0.51 0.00030924 1.1442 0.00069377 1.6541 0.001003 606.3610174317315 108.67 0.68752 112.21 112.08 112.77 3.5382 232 80 4 0 0 0 0.52083 2 26688 26688;26738 9.3831 1.7742 1 58762000 36499 6527 23095 23106 41680;41681 41680 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 606.8632202148438 2 606.360973 1210.70739 0.50984 0.00030915 0.11766 7.1343E-05 0.6275 0.00038049 606.3603758164323 109.55 0.38722 113.08 112.94 113.32 3.5347 121 53 3 0 0 0 0.56118 2 26908 26908;26949 2.9952 0 1 835590 36500 6527 23095 23106 41682;41683 41682 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 606.3605346679688 2 606.360973 1210.70739 0.4884 0.00029614 1.0615 0.00064365 1.5499 0.00093979 606.360882781156 108.69 0.70425 112.36 112.23 112.93 3.6746 197 75 3 0 0 0 0.54078 1 25911 25911 6.7232 0.99131 1 29446000 36501 6527 23095 23106 41684 41684 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 606.3612670898438 2 606.360973 1210.70739 0.55099 0.0003341 0.25892 0.000157 0.80991 0.0004911 606.3609548786804 108.62 0.61702 112.3 112.21 112.82 3.6751 131 70 2 0 0 0 0.54078 1 25755 25755 6.7232 1.4263 1 37548000 36502 6527 23095 23106 41685 41685 0.11046839845243994 RKTFLFLLSS 10 Unmodified _RKTFLFLLSS_ 0 0 0 ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF ENST00000392690.3_1_2:168725736-168725883:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 606.360973 1210.70739 0.48813 0.00029598 0.23203 0.00014069 0.72016 0.00043668 606.3608210824505 108.54 0.042145 112.22 112.18 112.22 3.6746 -0.0093229 -0.00091957 NaN 9.3831 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 8232300 36503 6527 23095 23106 0.11046839845243994 RKTHILIL 8 Unmodified _RKTHILIL_ 0 0 0 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 ENSG00000175264|ENST00000308064|CHST1 MSMS UPN48_class_I_Rep_2 6 497.33197021484375 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 112.65 1 116.32 115.82 116.82 3.6648 0 0 0 0.40798 1 26852 26852 0 0 1 36504 4715 23096 23107 41686 41686 0.15286622710482334 RKTLHLHED 9 Unmodified _RKTLHLHED_ 0 0 0 L1MA3_dup1297|chr3:4202739-4205014:-|1.0481033146682612|0.0080189472930684|7.03|151.0|49|2|sense L1MA3_dup1297|chr3:4202739-4205014:-|1.0481033146682612|0.0080189472930684|7.03|151.0|49|2|sense L1MA3_dup1297|chr3:4202739-4205014:-|1.0481033146682612|0.0080189472930684|7.03|151.0|49|2|sense MSMS UPN47_class_I_Rep_3 4 574.7628784179688 2 574.812179 1147.60981 NaN NaN NaN NaN NaN NaN NaN 64.782 1 67.962 67.462 68.462 3.1795 0 0 0 0.39428 1 15516 15516 2.0598 0.21551 1 36505 9471 23097 23108 41687 41687 0.041904509690766645 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN46_class_I_Rep_3 1 639.8446044921875 2 639.843676 1277.6728 0.74488 0.0004766 -0.29193 -0.00018679 0.45294 0.00028981 639.8433700211186 96.234 0.46103 96.234 95.915 96.376 0 95 51 2 0 0 0 0.52578 1 23337 23337 7.1017 1.3699 1 2256200 36506 4796 23098 23109 41688 41688 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN46_class_I_Rep_3 1 639.845458984375 2 639.843676 1277.6728 0.74544 0.00047696 -0.13351 -8.5427E-05 0.61192 0.00039154 639.8432761768244 96.423 0.11812 96.423 96.392 96.51 0 31 14 3 0 0 0 0.52578 1 23445 23445 7.1017 1.3699 1 438040 36507 4796 23098 23109 41689 41689 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN46_class_I_Rep_3 1 639.8431396484375 2 639.843676 1277.6728 0.74533 0.00047689 -0.19174 -0.00012268 0.55359 0.00035421 639.8433612240462 102.64 0.12199 102.64 102.53 102.66 0 22 12 3 0 0 0 0.52578 1 25047 25047 7.1017 1.3699 1 366160 36508 4796 23098 23109 41690 41690 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN47_class_I_Rep_1 2 639.8434448242188 2 639.843676 1277.6728 0.56367 0.00036066 -0.34966 -0.00022373 0.21401 0.00013694 639.8433567291349 92.328 0.48827 96.049 95.81 96.298 3.7209 148 68 3 0 0 0 0.52578 3 22992 22992;23016;23044 7.1017 1.3699 1 508840 36509 4796 23098 23109 41691;41692;41693 41691 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN47_class_I_Rep_2 3 639.8432006835938 2 639.843676 1277.6728 0.61026 0.00039047 -0.30523 -0.0001953 0.30504 0.00019518 639.8435387244677 91.656 0.79669 95.117 94.729 95.525 3.4613 584 117 7 0 0 0 0.52578 1 22609 22609 7.1017 1.3699 1 27934000 36510 4796 23098 23109 41694 41694 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN47_class_I_Rep_2 3 639.8433837890625 2 639.843676 1277.6728 0.61714 0.00039487 -0.31141 -0.00019925 0.30573 0.00019562 639.8433421954867 92.379 0.51035 95.845 95.55 96.06 3.4652 163 74 3 0 0 0 0.52578 2 22848 22848;22874 7.1017 1.3699 1 547430 36511 4796 23098 23109 41695;41696 41695 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN47_class_I_Rep_3 4 640.344482421875 2 639.843676 1277.6728 0.51004 0.00032635 -0.15353 -9.8233E-05 0.35652 0.00022811 639.8435052138312 92.529 0.54976 95.933 95.569 96.118 3.4034 184 77 4 0 0 0 0.52578 1 23108 23108 7.1017 1.3699 1 1387300 36512 4796 23098 23109 41697 41697 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN48_class_I_Rep_2 6 639.8435668945312 2 639.843676 1277.6728 0.49959 0.00031966 -0.3495 -0.00022363 0.15009 9.6037E-05 639.8436236229853 91.326 0.91702 95.081 94.632 95.549 3.7554 786 133 7 0 0 0 0.52578 1 21645 21645 7.1017 1.3699 1 96075000 36513 4796 23098 23109 41698 41698 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS UPN48_class_I_Rep_2 6 639.84423828125 2 639.843676 1277.6728 0.49962 0.00031968 -0.28411 -0.00018179 0.21551 0.00013789 639.8435629550584 98.391 0.77454 102.16 101.85 102.63 3.7707 533 109 7 0 0 0 0.52578 1 23308 23308 7.1017 1.3699 1 23431000 36514 4796 23098 23109 41699 41699 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 639.843676 1277.6728 0.43522 0.00027847 -0.25937 -0.00016596 0.17585 0.00011252 640.3447409792581 92.51 0.03978 96.134 96.116 96.156 3.624 -0.066464 4.659E-05 NaN 7.1017 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 148730 36515 4796 23098 23109 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 639.843676 1277.6728 0.49897 0.00031926 -0.2173 -0.00013903 0.28167 0.00018023 639.8433424190181 92.407 0.039307 96.17 96.156 96.195 3.7629 -0.030442 0.00010043 NaN 7.1017 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 87259 36516 4796 23098 23109 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 639.843676 1277.6728 0.6402 0.00040963 -1.0545 -0.00067472 -0.41431 -0.00026509 640.3441860254745 92.428 0.034592 96.306 96.286 96.321 3.8782 -0.058478 -0.00085523 NaN 7.1017 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 43931 36517 4796 23098 23109 0.04506971966452511 RKTNLTTFNPS 11 Unmodified _RKTNLTTFNPS_ 0 0 0 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 639.843676 1277.6728 0.64008 0.00040955 -0.43615 -0.00027907 0.20393 0.00013049 639.8436963564795 92.386 0.038132 96.264 96.241 96.28 3.8782 0.063471 -0.00017963 NaN 7.1017 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 81362 36518 4796 23098 23109 0.04506971966452511 RKTQYFIY 8 Unmodified _RKTQYFIY_ 0 0 0 L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|3|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|3|1|sense L1ME3B_dup296|chr1:110906548-110907028:+|2.9042229251281584|0.0098505829971181|8.2|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 559.8013916015625 2 559.803291 1117.59203 NaN NaN NaN NaN NaN NaN NaN 73.327 1 76.808 76.308 77.308 3.4812 0 0 0 0.4032 1 17272 17272 6.3541 0 1 36519 12707 23099 23110 41700 41700 0.03793735714225477 RKTRNFKHKTV 11 Unmodified _RKTRNFKHKTV_ 0 0 0 chr3:44586213-44587130|147|11.64|0.63|4.2|+|ENST00000441021|ZNF660,ZNF660;ENSG00000144792|ENST00000322734|ZNF660 chr3:44586213-44587130|147|11.64|0.63|4.2|+|ENST00000441021|ZNF660,ZNF660 chr3:44586213-44587130|147|11.64|0.63|4.2|+|ENST00000441021|ZNF660,ZNF660 MULTI-MSMS UPN46_class_I_Rep_3 1 472.28375244140625 3 472.28451 1413.8317 0.24558 0.00011599 -1.8143 -0.00085685 -1.5687 -0.00074087 472.6181513052215 96.541 0.043579 96.541 96.526 96.57 0 5 4 2 0 0 0 0.68024 1 23479 23479 0.50596 0 1 45897 36520 606 23100 23111 41701 41701 0.14133730385219678 RKTSSFYYS 9 Unmodified _RKTSSFYYS_ 0 0 0 REV__L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|63|3|anti-sense REV__L1MEg_dup6880|chr7:138521033-138521979:+|1.6988358851402143|0.1046432322367624|4.02|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_2 6 569.7801513671875 2 569.780013 1137.54547 NaN NaN NaN NaN NaN NaN NaN 22.557 1 26.2 25.7 26.7 3.6432 0 0 0 0.39428 1 2325 2325 2.0598 0 1 + 36521 28777 23101 23112 41702 41702 -0.017797489077111095 RKTYRKFSYIW 11 Unmodified _RKTYRKFSYIW_ 0 0 0 L1MEd_dup5975|chr4:153686342-153687419:+|4.4792371318427735|0.3092437432598406|3.86|151.0|25|2|sense L1MEd_dup5975|chr4:153686342-153687419:+|4.4792371318427735|0.3092437432598406|3.86|151.0|25|2|sense L1MEd_dup5975|chr4:153686342-153687419:+|4.4792371318427735|0.3092437432598406|3.86|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 516.6206665039062 3 516.620899 1546.84087 NaN NaN NaN NaN NaN NaN NaN 86.158 1 86.158 85.658 86.658 0 0 0 0 0.38417 1 20592 20592 0.094841 0 1 36522 13211 23102 23113 41703 41703 0.0893207895096566 RKVDRFNGV 9 Unmodified _RKVDRFNGV_ 0 0 0 ENSG00000139372|ENST00000392872|TDG;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MSMS UPN46_class_I_Rep_3 1 545.8106079101562 2 545.809439 1089.60433 NaN NaN NaN NaN NaN NaN NaN 91.107 1 91.107 90.607 91.607 0 0 0 0 0.39598 1 21991 21991 1.6526 0 1 36523 3139 23103 23114 41704 41704 0.06310772177266699 RKVFNLYL 8 Unmodified _RKVFNLYL_ 0 0 0 ENST00000266508.13_1_12:19671564-19671651:+|nuORF;nc|ENSG00000139154|Q6ZN18-3|AEBP2;nc|ENSG00000139154|Q6ZN18|AEBP2 ENST00000266508.13_1_12:19671564-19671651:+|nuORF ENST00000266508.13_1_12:19671564-19671651:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 526.3146362304688 2 526.816202 1051.61785 0.30414 0.00016023 -0.17934 -9.4478E-05 0.1248 6.5747E-05 526.8160820900597 70.869 0.43819 74.24 73.929 74.367 3.3713 70 37 2 0 0 0 0.72333 1 17251 17251 2.8892 0 1 336150 36524 6004 23104 23115 41705 41705 0.09410629956505545 RKVFYLLL 8 Unmodified _RKVFYLLL_ 0 0 0 MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|26|2|anti-sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|26|2|anti-sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|26|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.3372802734375 2 526.33677 1050.65899 0.44355 0.00023346 0.85124 0.00044804 1.2948 0.0006815 526.3372480872806 102.51 0.1726 106.3 106.22 106.4 3.7888 49 24 3 0 0 0 0.82752 1 25229 25229 0.69038 0 1 547030 36525 15904 23105 23116 41706 41706 0.13568390996010748 RKVHGMKK 8 Unmodified _RKVHGMKK_ 0 0 0 REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 492.30047607421875 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 45.847 1 49.2 48.7 49.7 3.3534 0 0 0 0.40746 1 9700 9700 0.69038 0 1 + 36526 27489 23106 23117 41707 41707 0.09384939001733983 RKVHGMKK 8 Unmodified _RKVHGMKK_ 0 0 0 REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 492.3015441894531 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 46.625 1 49.977 49.477 50.477 3.3515 0 0 0 0.40746 1 9936 9936 0.69038 0 1 + 36527 27489 23106 23117 41708 41708 0.09384939001733983 RKVHGMKK 8 Unmodified _RKVHGMKK_ 0 0 0 REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 492.3017272949219 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 46.685 1 50.036 49.536 50.536 3.3515 0 0 0 0.40746 1 9954 9954 0.69038 0 1 + 36528 27489 23106 23117 41709 41709 0.09384939001733983 RKVHGMKK 8 Unmodified _RKVHGMKK_ 0 0 0 REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 491.80047607421875 2 492.300196 982.585839 0.2991 0.00014725 2.5645 0.0012625 2.8636 0.0014097 492.3017234456546 67.681 0.17719 71.189 71.125 71.302 3.5077 23 15 2 0 0 0 0.72333 1 15490 15490 0.69038 0 1 113280 + 36529 27489 23106 23117 41710 41710 0.09384939001733983 RKVKFNAQ 8 Unmodified _RKVKFNAQ_ 0 0 0 REV__ENSG00000150316|ENST00000279839|CWC15 REV__ENSG00000150316|ENST00000279839|CWC15 MSMS UPN47_class_I_Rep_3 4 495.7962341308594 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 57.599 1 60.767 60.267 61.267 3.1681 0 0 0 0.40746 1 13321 13321 0.69038 0.69038 1 + 36530 19630 23107 23118 41711 41711 0.08184288636891779 RKVKGVVP 8 Unmodified _RKVKGVVP_ 0 0 0 REV__ENSG00000102967|ENST00000219240|DHODH REV__ENSG00000102967|ENST00000219240|DHODH MSMS UPN47_class_I_Rep_1 2 441.7879943847656 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 39.843 1 43.51 43.01 44.01 3.6668 0 0 0 0.40604 1 7836 7836 2.5775 0 1 + 36531 18208 23108 23119 41712 41712 0.1355437813061826 RKVKGVVP 8 Unmodified _RKVKGVVP_ 0 0 0 REV__ENSG00000102967|ENST00000219240|DHODH REV__ENSG00000102967|ENST00000219240|DHODH MSMS UPN47_class_I_Rep_2 3 441.78790283203125 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 41.696 1 45.062 44.562 45.562 3.3655 0 0 0 0.40746 1 8428 8428 0.69038 0 1 + 36532 18208 23108 23119 41713 41713 0.1355437813061826 RKVKGVVP 8 Unmodified _RKVKGVVP_ 0 0 0 REV__ENSG00000102967|ENST00000219240|DHODH REV__ENSG00000102967|ENST00000219240|DHODH MULTI-SECPEP UPN47_class_I_Rep_2 3 441.7878723144531 2 441.797812 881.581071 -0.66664 -0.00029452 2.7352 0.0012084 2.0685 0.00091387 441.7987205961915 37.421 0.11766 40.82 40.736 40.854 3.3988 9 6 2 0 0 0 0.72333 1 7121 7121 0.69038 0 1 12521 + 36533 18208 23108 23119 41714 41714 0.1355437813061826 RKVKHHVF 8 Unmodified _RKVKHHVF_ 0 0 0 L1MA5A_dup919|chr4:77810513-77811028:-|1.1185108817227272|0.051896103252737|4.43|151.0|16|3|sense L1MA5A_dup919|chr4:77810513-77811028:-|1.1185108817227272|0.051896103252737|4.43|151.0|16|3|sense L1MA5A_dup919|chr4:77810513-77811028:-|1.1185108817227272|0.051896103252737|4.43|151.0|16|3|sense MSMS UPN47_class_I_Rep_1 2 525.8190307617188 2 525.81961 1049.62467 NaN NaN NaN NaN NaN NaN NaN 65.656 1 69.012 68.512 69.512 3.3557 0 0 0 0.40604 1 15676 15676 2.5775 1.7838 1 36534 9953 23109 23120 41715 41715 0.10183987627738134 RKVKKIAK 8 Unmodified _RKVKKIAK_ 0 0 0 REV__HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|83|2|sense REV__HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|83|2|sense MSMS UPN46_class_I_Rep_3 1 485.848876953125 2 485.847836 969.681119 NaN NaN NaN NaN NaN NaN NaN 75.883 1 75.883 75.383 76.383 0 0 0 0 0.40746 1 17669 17669 0.69038 0 1 + 36535 23613 23110 23121 41716 41716 0.1950661546442234 RKVKQERD 8 Unmodified _RKVKQERD_ 0 0 0 LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|35|1|anti-sense LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|35|1|anti-sense LTR13_dup427|chr19:48876222-48877217:-|4.914115929197951|0.3020777714517864|4.02|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.8072509765625 2 529.806897 1057.59924 NaN NaN NaN NaN NaN NaN NaN 69.035 1 72.402 71.902 72.902 3.3678 0 0 0 0.40746 1 16704 16704 0.69038 0 1 36536 15566 23111 23122 41717 41717 0.07274468314676596 RKVMRHKC 8 Unmodified _RKVMRHKC_ 0 0 0 REV__Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|57|1|anti-sense REV__Charlie1a_dup1106|chr3:23907453-23908678:+|1.1446298643957|0.0737395785117518|3.96|151.0|57|1|anti-sense MSMS UPN48_class_I_Rep_1 5 529.2979125976562 2 529.29713 1056.57971 NaN NaN NaN NaN NaN NaN NaN 29.452 1 33.002 32.502 33.502 3.5499 0 0 0 0.40746 1 4096 4096 0.69038 0 1 + 36537 17297 23112 23123 41718 41718 0.053680974985582 RKVNPAAAL 9 Unmodified _RKVNPAAAL_ 0 0 0 nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A nc|ENSG00000156697|Q9BVJ6-3|UTP14A nc|ENSG00000156697|Q9BVJ6-3|UTP14A MULTI-MSMS UPN47_class_I_Rep_2 3 470.28985595703125 2 470.290351 938.566149 -0.33238 -0.00015631 -0.16377 -7.702E-05 -0.49615 -0.00023333 470.2901136904635 22.522 0.8254 25.966 25.586 26.411 3.4447 148 79 2 0 0 0 0.41259 1 2720 2720 7.2892 0 1 202350 36538 3739 23113 23124 41719 41719 0.09440886262598269 RKVQEVKG 8 Unmodified _RKVQEVKG_ 0 0 0 REV__L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|35|3|sense REV__L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.28814697265625 2 472.287808 942.561064 0.21799 0.00010295 0.19888 9.3931E-05 0.41687 0.00019688 472.2878981310196 87.977 0.30533 91.424 91.244 91.55 3.4471 45 36 2 0 0 0 0.82752 1 21901 21901 1.8442 0 1 232320 + 36539 28385 23114 23125 41720 41720 0.08748582400005489 RKVTNITEK 9 Unmodified _RKVTNITEK_ 0 0 0 REV__L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|23|3|sense REV__L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 544.8247680664062 2 544.824755 1087.63496 0.48461 0.00026403 0.063908 3.4819E-05 0.54851 0.00029884 544.8246378345208 89.62 0.66791 93.367 93.017 93.685 3.7471 125 78 2 0 0 0 0.49187 1 21346 21346 1.4819 0 1 129940 + 36540 25396 23115 23126 41721 41721 0.09464505771666154 RKVYALPAKS 10 Unmodified _RKVYALPAKS_ 0 0 0 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1 MSMS UPN46_class_I_Rep_3 1 566.8475952148438 2 566.84549 1131.67643 NaN NaN NaN NaN NaN NaN NaN 108.15 1 108.15 107.65 108.65 0 0 0 0 0.53105 1 26427 26427 9.3831 3.1773 1 + 36541 22048 23116 23127 41722 41722 0.11585686530997918 RKWCLWHT 8 Unmodified _RKWCLWHT_ 0 0 0 nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF nc|ENSG00000096746|P31942-6|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 MSMS UPN47_class_I_Rep_3 4 565.2898559570312 2 565.289828 1128.5651 NaN NaN NaN NaN NaN NaN NaN 29.878 1 33.201 32.701 33.701 3.3235 0 0 0 0.40746 1 4885 4885 0.69038 0 1 36542 6986 23117 23128 41723 41723 0.005963486220480263 RKWKPLQP 8 Unmodified _RKWKPLQP_ 0 0 0 ENSG00000137252|ENST00000370862|HCRTR2 ENSG00000137252|ENST00000370862|HCRTR2 ENSG00000137252|ENST00000370862|HCRTR2 MULTI-SECPEP UPN46_class_I_Rep_3 1 527.2939453125 2 526.821818 1051.62908 -0.058247 -3.0686E-05 0.6986 0.00036804 0.64035 0.00033735 526.8219980064691 24.126 0.10427 24.126 24.059 24.163 0 15 9 2 0 0 0 0.72333 1 3113 3113 0.69038 0.23204 1 63033 36543 3016 23118 23129 41724 41724 0.10533452050663072 RKWMAWRY 8 Unmodified _RKWMAWRY_ 0 0 0 ENST00000439461.5_1_19:52772835-52786550:+|nuORF ENST00000439461.5_1_19:52772835-52786550:+|nuORF ENST00000439461.5_1_19:52772835-52786550:+|nuORF MSMS UPN48_class_I_Rep_3 7 598.74462890625 2 598.810928 1195.6073 NaN NaN NaN NaN NaN NaN NaN 69.153 1 72.663 72.163 73.163 3.5094 0 0 0 0.40746 1 15909 15909 0.69038 0 1 36544 6768 23119 23130 41725 41725 0.017323240304449428 RKWNPYWK 8 Unmodified _RKWNPYWK_ 0 0 0 REV__L1PB4_dup593|chr2:68792263-68795977:-|9.96268775687938|0.1171059224321497|6.41|151.0|57|2|sense REV__L1PB4_dup593|chr2:68792263-68795977:-|9.96268775687938|0.1171059224321497|6.41|151.0|57|2|sense MSMS UPN46_class_I_Rep_3 1 589.315185546875 2 589.3169 1176.61925 NaN NaN NaN NaN NaN NaN NaN 58.828 1 58.828 58.328 59.328 0 0 0 0 0.40746 1 12971 12971 0.69038 0 1 + 36545 30614 23120 23131 41726 41726 0.03800264045230506 RKWSGGHHAV 10 Unmodified _RKWSGGHHAV_ 0 0 0 REV__ENSG00000146221|ENST00000371505|TCTE1 REV__ENSG00000146221|ENST00000371505|TCTE1 MSMS UPN47_class_I_Rep_1 2 567.7299194335938 2 567.799406 1133.58426 NaN NaN NaN NaN NaN NaN NaN 36.232 1 39.901 39.401 40.401 3.6692 0 0 0 0.53105 1 6739 6739 1.8442 0.36234 1 + 36546 19535 23121 23132 41727 41727 0.02281021237308778 RKWTYKVK 8 Unmodified _RKWTYKVK_ 0 0 0 REV__MER50_dup2407|chr20:8537018-8537619:-|1.9493549606586944|0.0139155973698601|7.13|151.0|20|1|anti-sense REV__MER50_dup2407|chr20:8537018-8537619:-|1.9493549606586944|0.0139155973698601|7.13|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.8341674804688 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 88.561 1 91.954 91.454 92.454 3.3931 0 0 0 0.40746 1 22213 22213 0.69038 0.16561 1 + 36547 31372 23122 23133 41728 41728 0.10577721222125547 RKYEKRQKQRR 11 Unmodified _RKYEKRQKQRR_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|25|1|sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|25|1|sense MSMS UPN48_class_I_Rep_1 5 525.9790649414062 3 525.981601 1574.92297 NaN NaN NaN NaN NaN NaN NaN 98.886 1 102.49 101.99 102.99 3.6065 0 0 0 0.38417 1 23867 23867 0.45452 0.35968 1 + 36548 24056 23123 23134 41729 41729 0.15850994082575198 RKYFRQELERL 11 Unmodified _RKYFRQELERL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS UPN48_class_I_Rep_1 5 513.2906494140625 3 513.291441 1536.85249 NaN NaN NaN NaN NaN NaN NaN 31.241 1 34.775 34.275 35.275 3.5342 0 0 0 0.38417 1 4596 4596 0.094841 0 1 36549 1286 23124 23135 41730 41730 0.10554275974277516 RKYKKNTQKLK 11 Unmodified _RKYKKNTQKLK_ 0 0 0 REV__L1PB1_dup441|chr1:149223496-149224383:+|3.1475720385922195|0.2382426944183741|3.72|150.0|17|2|sense REV__L1PB1_dup441|chr1:149223496-149224383:+|3.1475720385922195|0.2382426944183741|3.72|150.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 478.96893310546875 3 478.968299 1433.88307 NaN NaN NaN NaN NaN NaN NaN 83.621 1 83.621 83.121 84.121 0 0 0 0 0.38417 1 19870 19870 0.40827 0 1 + 36550 30408 23125 23136 41731 41731 0.18348054359307753 RKYLCWGY 8 Unmodified _RKYLCWGY_ 0 0 0 REV__MLT1B_dup8600|chr8:27347398-27347778:-|4.0450584614057|0.0192214642798872|7.72|151.0|2|1|sense REV__MLT1B_dup8600|chr8:27347398-27347778:-|4.0450584614057|0.0192214642798872|7.72|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 544.7720947265625 2 544.770937 1087.52732 NaN NaN NaN NaN NaN NaN NaN 39.918 1 39.918 39.418 40.418 0 0 0 0 0.39624 1 7710 7710 9.3474 0 1 + 36551 31620 23126 23137 41732 41732 -0.012941623634105781 RKYLPVIIFLR 11 Unmodified _RKYLPVIIFLR_ 0 0 0 ENST00000419038.2_1_2:63870904-63871126:-|nuORF ENST00000419038.2_1_2:63870904-63871126:-|nuORF ENST00000419038.2_1_2:63870904-63871126:-|nuORF MSMS UPN48_class_I_Rep_3 7 473.30621337890625 3 473.306252 1416.89693 NaN NaN NaN NaN NaN NaN NaN 54.92 1 58.489 57.989 58.989 3.5694 0 0 0 0.38417 1 11593 11593 0.50596 0 1 36552 6670 23127 23138 41733 41733 0.20515331858382524 RKYPLIVTGF 10 Unmodified _RKYPLIVTGF_ 0 0 0 L1MB8_dup4394|chr5:10362858-10364116:+|2.3579182127898077|0.0591180562409|5.32|151.0|49|3|sense L1MB8_dup4394|chr5:10362858-10364116:+|2.3579182127898077|0.0591180562409|5.32|151.0|49|3|sense L1MB8_dup4394|chr5:10362858-10364116:+|2.3579182127898077|0.0591180562409|5.32|151.0|49|3|sense MSMS UPN46_class_I_Rep_3 1 597.3568725585938 2 597.355691 1192.69683 NaN NaN NaN NaN NaN NaN NaN 88.832 1 88.832 88.332 89.332 0 0 0 0 0.53105 1 21350 21350 3.2813 0.28607 1 36553 11006 23128 23139 41734 41734 0.10818857190793096 RKYPRLKRL 9 Unmodified _RKYPRLKRL_ 0 0 0 HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense MSMS UPN47_class_I_Rep_3 4 615.4046020507812 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 71.163 1 74.382 73.882 74.882 3.2188 0 0 0 0.4007 1 17447 17447 0.52476 0.12405 1 36554 8073 23129 23140 41735 41735 0.18280165678788762 RKYPRLKRL 9 Unmodified _RKYPRLKRL_ 0 0 0 HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense MSMS UPN48_class_I_Rep_2 6 615.40380859375 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 70.517 1 74.053 73.553 74.553 3.5359 0 0 0 0.4007 1 16408 16408 0.52476 0.12405 1 36555 8073 23129 23140 41736 41736 0.18280165678788762 RKYQVVRAN 9 Unmodified _RKYQVVRAN_ 0 0 0 REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|73|3|sense REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|73|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 567.3306884765625 2 567.330539 1132.64652 0.52199 0.00029614 -1.0982 -0.00062304 -0.57622 -0.0003269 567.3298867750962 82.22 0.19852 85.618 85.523 85.722 3.3984 37 24 2 0 0 0 0.12462 1 20478 20478 1.8442 0 1 104930 + 36556 24379 23130 23141 41737 41737 0.0855074758567298 RKYQVVRAN 9 Unmodified _RKYQVVRAN_ 0 0 0 REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|73|3|sense REV__L1M4_dup15440|chr13:51655016-51657233:-|1.0281484051180505|0.0050234485129724|7.68|151.0|73|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 567.330539 1132.64652 0.47512 0.00026955 -0.68009 -0.00038584 -0.20497 -0.00011629 567.3300220832414 82.301 0.24929 85.638 85.438 85.687 3.337 -0.03103 0.00043537 NaN 1.8442 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 62360 + 36557 24379 23130 23141 0.0855074758567298 RKYRPRVE 8 Unmodified _RKYRPRVE_ 0 0 0 ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A MSMS UPN47_class_I_Rep_2 3 552.3262939453125 2 552.325257 1102.63596 NaN NaN NaN NaN NaN NaN NaN 111.06 1 114.59 114.09 115.09 3.5271 0 0 0 0.40643 1 27039 27039 2.0598 0 1 36558 5412 23131 23142 41738 41738 0.08874764931215395 RKYVEGLK 8 Unmodified _RKYVEGLK_ 0 0 0 REV__L1MD2_dup7531|chr11:11913902-11915684:+|4.260692420664277|0.3237575318450198|3.72|151.0|63|3|sense REV__L1MD2_dup7531|chr11:11913902-11915684:+|4.260692420664277|0.3237575318450198|3.72|151.0|63|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.7121887207031 2 496.798009 991.581465 0.11121 5.525E-05 -1.8508 -0.00091947 -1.7396 -0.00086422 496.79723320862445 32.939 0.12928 32.939 32.873 33.003 0 10 8 2 0 0 0 0.72333 1 5687 5687 2.3027 0 1 208460 + 36559 27434 23132 23143 41739 41739 0.08533753059805349 RLAEQRARI 9 Unmodified _RLAEQRARI_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS UPN47_class_I_Rep_3 4 556.8358764648438 2 556.835988 1111.65742 -0.43796 -0.00024387 -0.13428 -7.4771E-05 -0.57224 -0.00031864 556.835981121733 13.39 0.25585 16.764 16.695 16.951 3.3734 43 30 2 0 0 0 0.47197 1 309 309 3.5965 0 1 26335 36560 1681 23133 23144 41740 41740 0.1060614995992637 RLAFYQRPF 9 Unmodified _RLAFYQRPF_ 0 0 0 REV__ENSG00000204599|ENST00000396551|TRIM39 REV__ENSG00000204599|ENST00000396551|TRIM39 MULTI-MSMS UPN48_class_I_Rep_3 7 599.330078125 2 599.330008 1196.64546 0.46176 0.00027675 -0.57519 -0.00034473 -0.11343 -6.7983E-05 599.3293327516964 57.608 0.81606 61.14 60.732 61.548 3.5317 153 65 3 0 0 0 0.48846 1 12484 12484 1.8442 0.19162 1 273660 + 36561 21201 23134 23145 41741 41741 0.055005332167411325 RLAILQIGI 9 Unmodified _RLAILQIGI_ 0 0 0 ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF ENST00000555252.5_1_14:64855058-64907131:+|nuORF MSMS UPN47_class_I_Rep_3 4 498.8323669433594 2 498.831852 995.649151 NaN NaN NaN NaN NaN NaN NaN 41.225 1 44.462 43.962 44.962 3.2372 0 0 0 0.39518 1 8343 8343 1.8442 0 1 36562 7428 23135 23146 41742 41742 0.15115202990614307 RLAIPPTH 8 Unmodified _RLAIPPTH_ 0 0 0 REV__ENSG00000165490|ENST00000533655|DDIAS REV__ENSG00000165490|ENST00000533655|DDIAS MULTI-SECPEP UPN46_class_I_Rep_3 1 452.26910400390625 2 452.771794 903.529036 0.17287 7.8272E-05 -1.8901 -0.00085579 -1.7172 -0.00077752 452.77067646597067 43.146 0.045292 43.146 43.12 43.165 0 4 2 2 0 0 0 0.72333 1 8593 8593 0.69038 0 1 454420 + 36563 20120 23136 23147 41743 41743 0.0734121471683693 RLAKRKLLKL 10 Unmodified _RLAKRKLLKL_ 0 0 0 ENST00000545279.5_1_5:135468581-135489282:+|nuORF ENST00000545279.5_1_5:135468581-135489282:+|nuORF ENST00000545279.5_1_5:135468581-135489282:+|nuORF MSMS UPN48_class_I_Rep_2 6 619.943359375 2 619.942799 1237.87105 NaN NaN NaN NaN NaN NaN NaN 67.924 1 71.433 70.933 71.933 3.5083 0 0 0 0.53105 1 15631 15631 0 0 1 36564 7374 23137 23148 41744 41744 0.2616248240678942 RLALKGGW 8 Unmodified _RLALKGGW_ 0 0 0 REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|19|2|anti-sense REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_1 2 450.7839050292969 2 450.774337 899.534121 NaN NaN NaN NaN NaN NaN NaN 114.9 1 118.48 117.98 118.98 3.5809 0 0 0 0.40738 1 28408 28408 0.79363 0 1 + 36565 30964 23138 23149 41745 41745 0.08033518579463816 RLALKGGW 8 Unmodified _RLALKGGW_ 0 0 0 REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|19|2|anti-sense REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_1 2 450.7600402832031 2 450.774337 899.534121 NaN NaN NaN NaN NaN NaN NaN 118 1 121.61 121.11 122.11 3.6036 0 0 0 0.40738 1 29269 29269 0.79363 0 1 + 36566 30964 23138 23149 41746 41746 0.08033518579463816 RLALKGGW 8 Unmodified _RLALKGGW_ 0 0 0 REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|19|2|anti-sense REV__LTR53_dup373|chr15:22846025-22846421:-|1.0112380684301203|0.1032751875671185|3.29|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_1 5 450.7721862792969 2 450.774337 899.534121 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.51 121.01 122.01 3.6215 0 0 0 0.40738 1 28737 28737 0.79363 0 1 + 36567 30964 23138 23149 41747 41747 0.08033518579463816 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN47_class_I_Rep_1 2 550.8135375976562 2 550.81419 1099.61383 -0.014386 -7.9239E-06 -0.43218 -0.00023805 -0.44657 -0.00024598 550.8139264888865 34.69 0.70511 38.376 37.977 38.682 3.6859 90 56 3 0 0 0 0.17897 3 6217 6217;6256;6295 22.736 9.2963 1 97321 36568 4246 23139 23150 41748;41749;41750 41748 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MSMS UPN47_class_I_Rep_2 3 550.8134155273438 2 550.81419 1099.61383 NaN NaN NaN NaN NaN NaN NaN 34.955 1 38.381 37.881 38.881 3.4253 0 0 0 0.10315 1 6385 6385 24.021 9.1823 1 36569 4246 23139 23150 41751 41751 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MSMS UPN47_class_I_Rep_2 3 550.8145751953125 2 550.81419 1099.61383 NaN NaN NaN NaN NaN NaN NaN 35.12 1 38.546 38.046 39.046 3.4253 0 0 0 0.2408 1 6435 6435 13.906 3.8321 1 36570 4246 23139 23150 41752 41752 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MSMS UPN47_class_I_Rep_3 4 550.8153076171875 2 550.81419 1099.61383 NaN NaN NaN NaN NaN NaN NaN 35.237 1 38.501 38.001 39.001 3.2639 0 0 0 0.37476 1 6503 6503 6.7232 2.7788 1 36571 4246 23139 23150 41753 41753 0.06800540462791105 RLASEVRI 8 Unmodified _RLASEVRI_ 0 0 0 MER21C_dup2360|chr7:73457678-73458297:+|1.4795255100767546|0.0930419033761325|3.99|151.0|14|2|sense MER21C_dup2360|chr7:73457678-73458297:+|1.4795255100767546|0.0930419033761325|3.99|151.0|14|2|sense MER21C_dup2360|chr7:73457678-73458297:+|1.4795255100767546|0.0930419033761325|3.99|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 472.6273498535156 2 472.287808 942.561064 0.04583 2.1645E-05 0.13958 6.5921E-05 0.18541 8.7566E-05 472.2879123116641 88.063 0.17987 91.45 91.381 91.561 3.3873 20 16 2 0 0 0 0.82752 1 22083 22083 4.756 0 1 127740 36572 15888 23140 23151 41754 41754 0.08748582400005489 RLAVYIDKV 9 Unmodified _RLAVYIDKV_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MSMS UPN46_class_I_Rep_3 1 538.8273315429688 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 49.68 1 49.68 49.18 50.18 0 0 0 0 0.3377 1 10446 10446 8.7454 2.5396 1 36573 2042 23141 23152 41755 41755 0.1041859526535518 RLAVYIDKV 9 Unmodified _RLAVYIDKV_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN47_class_I_Rep_1 2 538.8265380859375 2 538.826766 1075.63898 0.063242 3.4076E-05 -0.17198 -9.2667E-05 -0.10874 -5.8591E-05 538.8265704601604 43.372 1.0538 47.059 46.65 47.703 3.6875 161 64 3 0 0 0 0.12096 5 8918 8836;8874;8918;8960;9021 29.841 11.694 1 274730 36574 2042 23141 23152 41756;41757;41758;41759;41760 41758 0.1041859526535518 RLAVYIDKV 9 Unmodified _RLAVYIDKV_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN47_class_I_Rep_2 3 538.8267822265625 2 538.826766 1075.63898 0.10285 5.5421E-05 -0.061509 -3.3143E-05 0.041345 2.2278E-05 538.8266875754566 43.829 1.0562 47.187 46.711 47.767 3.358 106 60 3 0 0 0 0.16799 6 9039 8996;9039;9083;9129;9169;9242 23.79 9.3844 1 239810 36575 2042 23141 23152 41761;41762;41763;41764;41765;41766 41762 0.1041859526535518 RLAVYIDKV 9 Unmodified _RLAVYIDKV_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN47_class_I_Rep_3 4 538.8265380859375 2 538.826766 1075.63898 0.14962 8.0619E-05 -0.21953 -0.00011829 -0.069907 -3.7668E-05 538.8265726113805 43.966 1.1111 47.208 46.835 47.947 3.2419 146 64 3 0 0 0 0.20317 6 9183 9094;9138;9183;9226;9268;9310 20.415 5.1746 1 293030 36576 2042 23141 23152 41767;41768;41769;41770;41771;41772 41769 0.1041859526535518 RLCEGIYN 8 Unmodified _RLCEGIYN_ 0 0 0 L1MB4_dup7698|chr17:30977869-30978605:-|1.179279766238797|0.1251174659960881|3.24|151.0|24|3|sense L1MB4_dup7698|chr17:30977869-30978605:-|1.179279766238797|0.1251174659960881|3.24|151.0|24|3|sense L1MB4_dup7698|chr17:30977869-30978605:-|1.179279766238797|0.1251174659960881|3.24|151.0|24|3|sense MSMS UPN48_class_I_Rep_3 7 484.2359619140625 2 484.236927 966.459301 NaN NaN NaN NaN NaN NaN NaN 79.837 1 83.48 82.98 83.98 3.6423 0 0 0 0.40501 1 18933 18933 3.9444 0 1 36577 10584 23142 23153 41773 41773 -0.025270320140862168 RLCHVQMWA 9 Unmodified _RLCHVQMWA_ 0 0 0 REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|222|1|anti-sense REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|222|1|anti-sense MSMS UPN46_class_I_Rep_3 1 572.2819213867188 2 572.281146 1142.54774 NaN NaN NaN NaN NaN NaN NaN 14.565 1 14.565 14.065 15.065 0 0 0 0 0.39428 1 666 666 2.0598 0 1 + 36578 25438 23143 23154 41774 41774 -0.01783314975250505 RLCSQLLRRL 10 Unmodified _RLCSQLLRRL_ 0 0 0 AluJr_dup57843|chr12:118316423-118316714:-|1.5553777548083758|0.0040900915009084|8.57|151.0|1|1|sense AluJr_dup57843|chr12:118316423-118316714:-|1.5553777548083758|0.0040900915009084|8.57|151.0|1|1|sense AluJr_dup57843|chr12:118316423-118316714:-|1.5553777548083758|0.0040900915009084|8.57|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 629.3826293945312 2 629.382249 1256.74994 NaN NaN NaN NaN NaN NaN NaN 20.185 1 20.185 19.685 20.685 0 0 0 0 0.53105 1 2055 2055 1.4819 0 1 36579 164 23144 23155 41775 41775 0.1318391170182167 RLDDAIHVL 9 Unmodified _RLDDAIHVL_ 0 0 0 nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-4|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884|TCF4;ENSG00000196628|ENST00000354452|TCF4 nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MSMS UPN47_class_I_Rep_1 2 526.2982177734375 2 526.298373 1050.58219 0.15668 8.2458E-05 -0.2543 -0.00013384 -0.09762 -5.1377E-05 526.2982575475775 49.227 0.77758 52.886 52.597 53.374 3.6592 91 53 2 0 0 0 0.20317 2 10668 10668;10723 20.415 7.1213 1 196300 36580 3164;5324 23145 23156 41776;41777 41776 0.05892547708845086 RLDDAIHVL 9 Unmodified _RLDDAIHVL_ 0 0 0 nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-4|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884|TCF4;ENSG00000196628|ENST00000354452|TCF4 nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MSMS UPN47_class_I_Rep_2 3 526.2981567382812 2 526.298373 1050.58219 0.097371 5.1246E-05 -0.20812 -0.00010953 -0.11075 -5.8288E-05 526.2982535435048 49.577 1.0802 52.92 52.632 53.712 3.3431 98 62 2 0 0 0 0.21414 1 10850 10850 19.362 7.1213 1 155750 36581 3164;5324 23145 23156 41778 41778 0.05892547708845086 RLDDAIHVL 9 Unmodified _RLDDAIHVL_ 0 0 0 nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-4|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884|TCF4;ENSG00000196628|ENST00000354452|TCF4 nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MATCH UPN47_class_I_Rep_3 4 2 526.298373 1050.58219 0.38801 0.00020421 -0.50934 -0.00026807 -0.12133 -6.3854E-05 526.2981848461773 49.723 1.0238 52.949 52.726 53.75 3.2262 0.030642 -0.0002274 NaN 20.415 90 56 2 NaN NaN NaN NaN 0 NaN NaN 0 141920 36582 3164;5324 23145 23156 0.05892547708845086 RLDEKFKK 8 Unmodified _RLDEKFKK_ 0 0 0 REV__ENST00000504241.1_1_5:180625117-180625708:-|nuORF REV__ENST00000504241.1_1_5:180625117-180625708:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 532.3170166015625 2 532.316566 1062.61858 0.33765 0.00017974 -1.511 -0.00080433 -1.1734 -0.0006246 532.3157623924019 108.01 0.65218 108.01 107.91 108.57 0 82 62 2 0 0 0 0.82752 1 26458 26458 6.7232 0 1 40472000 + 36583 19528 23146 23157 41779 41779 0.0897742460556401 RLDEKFKK 8 Unmodified _RLDEKFKK_ 0 0 0 REV__ENST00000504241.1_1_5:180625117-180625708:-|nuORF REV__ENST00000504241.1_1_5:180625117-180625708:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 532.8179931640625 2 532.316566 1062.61858 0.32761 0.00017439 0.18117 9.6439E-05 0.50878 0.00027083 532.3165545616438 107.86 0.30385 111.49 111.41 111.71 3.6313 65 24 4 0 0 0 0.82752 1 26010 26010 10.824 0.75 1 66219000 + 36584 19528 23146 23157 41780 41780 0.0897742460556401 RLDELGGVYL 10 Unmodified _RLDELGGVYL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN47_class_I_Rep_1 2 567.8115844726562 2 567.811313 1133.60807 0.36913 0.0002096 -0.14423 -8.1896E-05 0.2249 0.0001277 567.8113289492477 63.343 0.62886 66.702 66.423 67.052 3.3595 85 52 3 0 0 0 0.51021 2 14995 14959;14995 10.8 0 1 227390 36585 2259 23147 23158 41781;41782 41782 0.04661397160475644 RLDELGGVYL 10 Unmodified _RLDELGGVYL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN47_class_I_Rep_3 4 567.811279296875 2 567.811313 1133.60807 0.4233 0.00024036 0.069787 3.9626E-05 0.49309 0.00027998 567.811396401923 63.599 0.41602 66.773 66.525 66.941 3.1741 50 34 2 0 0 0 0.51021 1 15167 15167 10.8 0.64894 1 141320 36586 2259 23147 23158 41783 41783 0.04661397160475644 RLDELGGVYL 10 Unmodified _RLDELGGVYL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 567.811313 1133.60807 0.41285 0.00023442 -0.28834 -0.00016372 0.12451 7.0701E-05 567.8112123101033 63.676 0.56321 66.932 66.665 67.228 3.2556 0.12958 -0.00013344 NaN 10.8 76 48 2 NaN NaN NaN NaN 0 NaN NaN 0 270340 36587 2259 23147 23158 0.04661397160475644 RLDETIQAI 9 Unmodified _RLDETIQAI_ 0 0 0 ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 MULTI-SECPEP UPN47_class_I_Rep_2 3 530.2715454101562 2 529.795663 1057.57677 0.11758 6.2295E-05 0.38069 0.00020169 0.49827 0.00026398 529.795941264501 48.013 0.42928 51.362 51.211 51.64 3.3492 39 27 2 0 0 0 0.10301 1 10323 10323 18.146 0 1 118480 36588 1669 23148 23159 41784 41784 0.05028824126384279 RLDIEHRKK 9 Unmodified _RLDIEHRKK_ 0 0 0 THRAP3|p.R723H|1|0.41|ENSG00000054118|chr1:36296635-36296635|G/A|missense_variant THRAP3|p.R723H|1|0.41|ENSG00000054118|chr1:36296635-36296635|G/A|missense_variant THRAP3|p.R723H|1|0.41|ENSG00000054118|chr1:36296635-36296635|G/A|missense_variant MULTI-MSMS UPN48_class_I_Rep_3 7 597.856689453125 2 597.856921 1193.69929 0.55911 0.00033427 -0.88823 -0.00053104 -0.32912 -0.00019677 597.8560645566207 83.197 0.92611 86.903 86.469 87.395 3.7066 161 121 2 0 0 0 0.50088 1 19692 19692 0.52476 0 1 147630 36589 32970 23149 23160 41785 41785 0.11018705648439209 RLDKDNVLY 9 Unmodified _RLDKDNVLY_ 0 0 0 L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|101|3|sense L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|101|3|sense L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|101|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.810791015625 2 568.308938 1134.60332 0.34179 0.00019424 -0.0086953 -4.9416E-06 0.3331 0.0001893 568.3088933778804 50.536 0.6533 54.157 53.784 54.438 3.621 68 40 2 0 0 0 0.30034 2 10279 10279;10314 13.906 0 1 168980 36590 14967 23150 23161 41786;41787 41786 0.04140513017705416 RLDPQQIK 8 Unmodified _RLDPQQIK_ 0 0 0 nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2 nc|ENSG00000138669|Q13237-2|PRKG2 nc|ENSG00000138669|Q13237-2|PRKG2 MULTI-MSMS UPN48_class_I_Rep_1 5 499.2933044433594 2 499.293091 996.571629 0.19392 9.6823E-05 0.17239 8.6072E-05 0.36631 0.0001829 499.29314926813237 88.94 0.36899 92.563 92.363 92.732 3.6229 63 44 2 0 0 0 0.82752 1 21347 21347 4.3292 0 1 85685 36591 3102 23151 23162 41788 41788 0.07320565054430972 RLDPQQIK 8 Unmodified _RLDPQQIK_ 0 0 0 nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2 nc|ENSG00000138669|Q13237-2|PRKG2 nc|ENSG00000138669|Q13237-2|PRKG2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 499.293091 996.571629 0.2879 0.00014375 0.092429 4.6149E-05 0.38033 0.00018989 499.2931179571206 89.016 0.1991 92.753 92.63 92.829 3.7379 0.095358 -5.3849E-05 NaN 4.3292 42 25 2 NaN NaN NaN NaN 0 NaN NaN 0 122880 36592 3102 23151 23162 0.07320565054430972 RLEKLSAL 8 Unmodified _RLEKLSAL_ 0 0 0 ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP;nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP ENST00000493315.1_1_2:63631156-63711794:-|nuORF ENST00000493315.1_1_2:63631156-63711794:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 465.2919006347656 2 465.292559 928.570566 0.18103 8.4233E-05 -0.16747 -7.7924E-05 0.01356 6.3093E-06 465.2923688080391 64.145 0.19289 67.603 67.518 67.711 3.4578 22 12 3 0 0 0 0.82752 1 14500 14500 10.824 0 1 239930 36593 3336 23152 23163 41789 41789 0.10342350685493784 RLEKLSAL 8 Unmodified _RLEKLSAL_ 0 0 0 ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP;nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP ENST00000493315.1_1_2:63631156-63711794:-|nuORF ENST00000493315.1_1_2:63631156-63711794:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 465.2922668457031 2 465.292559 928.570566 0.23413 0.00010894 -0.7931 -0.00036902 -0.55897 -0.00026008 465.2921274467658 63.678 0.12064 67.152 67.115 67.236 3.4743 11 7 2 0 0 0 0.82752 1 14346 14346 4.3292 0 1 169800 36594 3336 23152 23163 41790 41790 0.10342350685493784 RLELTLAAP 9 Unmodified _RLELTLAAP_ 0 0 0 nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3 nc|ENSG00000158486|Q8TD57-3|DNAH3 nc|ENSG00000158486|Q8TD57-3|DNAH3 MULTI-SECPEP UPN46_class_I_Rep_3 1 491.7960510253906 2 492.297842 982.581131 0.25426 0.00012517 -1.1177 -0.00055022 -0.8634 -0.00042505 492.2971885910329 48.32 0.22474 48.32 48.285 48.51 0 38 20 2 0 0 0 0.12235 1 10108 10108 4.756 0.42677 1 808850 36595 16721 23153 23164 41791 41791 0.08914333339930636 RLELYRQR 8 Unmodified _RLELYRQR_ 0 0 0 REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF MSMS UPN46_class_I_Rep_3 1 567.330322265625 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 90.039 1 90.039 89.539 90.539 0 0 0 0 0.40746 1 21695 21695 0.69038 0 1 + 36596 17772 23154 23165 41792 41792 0.08550747585650242 RLELYRQR 8 Unmodified _RLELYRQR_ 0 0 0 REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 567.83203125 2 567.330539 1132.64652 0.4814 0.00027311 -0.04662 -2.6449E-05 0.43478 0.00024666 567.330424180349 81.477 0.44296 85.162 85.022 85.465 3.685 85 54 2 0 0 0 0.82752 1 19351 19351 2.0598 0 1 285160 + 36597 17772 23154 23165 41793 41793 0.08550747585650242 RLELYRQR 8 Unmodified _RLELYRQR_ 0 0 0 REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF MSMS UPN48_class_I_Rep_3 7 567.3309326171875 2 567.330539 1132.64652 NaN NaN NaN NaN NaN NaN NaN 82.302 1 86.009 85.509 86.509 3.7066 0 0 0 0.40746 1 19502 19502 0.69038 0 1 + 36598 17772 23154 23165 41794 41794 0.08550747585650242 RLEQFEGLK 9 Unmodified _RLEQFEGLK_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3114624023438 2 560.31148 1118.60841 0.29418 0.00016483 -1.0045 -0.00056285 -0.71036 -0.00039802 560.3109567840662 13.736 0.20333 17.268 17.173 17.377 3.5314 46 27 2 0 0 0 0.47197 1 296 296 3.5965 0 1 24149 36599 16551 23155 23166 41795 41795 0.05384816880314247 RLEQFEGLK 9 Unmodified _RLEQFEGLK_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 560.31148 1118.60841 0.59194 0.00033167 -1.1552 -0.00064726 -0.56325 -0.00031559 560.3109218873643 13.832 0.20413 17.347 17.272 17.476 3.5156 0.090407 -7.0842E-05 NaN 3.5965 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 29254 36600 16551 23155 23166 0.05384816880314247 RLEQFEGLK 9 Unmodified _RLEQFEGLK_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.31148 1118.60841 0.60424 0.00033856 -1.1315 -0.00063399 -0.52726 -0.00029543 560.3110315984785 13.501 0.20519 17.156 17.074 17.279 3.6549 -0.10121 -4.4301E-05 NaN 3.5965 38 27 2 NaN NaN NaN NaN 0 NaN NaN 0 44623 36601 16551 23155 23166 0.05384816880314247 RLEQFEGLK 9 Unmodified _RLEQFEGLK_ 0 0 0 MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MSTA-int_dup2743|chr17:72824460-72826059:+|4.542563053063408|0.1180096122674631|5.27|151.0|40|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 560.31148 1118.60841 0.29418 0.00016483 -1.0045 -0.00056285 -0.71036 -0.00039802 560.3109567840662 13.736 0.20333 17.268 17.173 17.377 3.5314 0.010805 9.798E-05 NaN 3.5965 46 27 2 NaN NaN NaN NaN 0 NaN NaN 0 24149 36602 16551 23155 23166 0.05384816880314247 RLEREYRA 8 Unmodified _RLEREYRA_ 0 0 0 REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF MSMS UPN48_class_I_Rep_3 7 546.7982788085938 2 546.799072 1091.58359 NaN NaN NaN NaN NaN NaN NaN 36.014 1 39.68 39.18 40.18 3.6667 0 0 0 0.40659 1 5910 5910 1.8442 0 1 + 36603 17779 23156 23167 41796 41796 0.0414618179761419 RLERKILAL 9 Unmodified _RLERKILAL_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MSMS UPN47_class_I_Rep_2 3 556.3695678710938 2 556.369133 1110.72371 NaN NaN NaN NaN NaN NaN NaN 95.354 1 98.829 98.329 99.329 3.4753 0 0 0 0.40038 1 23468 23468 0.6015 0 1 36604 2731 23157 23168 41797 41797 0.17277965801986284 RLFDEPQLA 9 Unmodified _RLFDEPQLA_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.7897338867188 2 544.790381 1087.56621 0.45486 0.0002478 -0.51719 -0.00028176 -0.062333 -3.3958E-05 544.7902836839748 53.901 0.63139 57.087 56.849 57.48 3.1856 58 41 2 0 0 0 0.44742 1 12153 12153 5.2969 0.066215 1 97424 36605 996 23158 23169 41798 41798 0.025928414719373905 RLFDEPQLA 9 Unmodified _RLFDEPQLA_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 544.790381 1087.56621 0.48595 0.00026474 -0.24081 -0.00013119 0.24514 0.00013355 544.7903397180932 53.76 0.68749 57.087 56.83 57.518 3.3266 3.0436E-05 0.00014982 NaN 5.2969 93 44 3 NaN NaN NaN NaN 0 NaN NaN 0 115610 36606 996 23158 23169 0.025928414719373905 RLFDEPQLA 9 Unmodified _RLFDEPQLA_ 0 0 0 nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF nc|ENSG00000064726|Q9H0C5-2|BTBD1 nc|ENSG00000064726|Q9H0C5-2|BTBD1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 544.790381 1087.56621 0.45486 0.0002478 -0.51719 -0.00028176 -0.062333 -3.3958E-05 544.7902836839748 53.901 0.63139 57.087 56.849 57.48 3.1856 -3.0436E-05 -0.00015131 NaN 5.2969 58 41 2 NaN NaN NaN NaN 0 NaN NaN 0 97424 36607 996 23158 23169 0.025928414719373905 RLFEKRYRYGR 11 Unmodified _RLFEKRYRYGR_ 0 0 0 REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS UPN47_class_I_Rep_1 2 515.6260986328125 3 515.291664 1542.85316 -0.21193 -0.0001092 -0.46761 -0.00024096 -0.67954 -0.00035016 515.2913760011354 22.315 0.47202 25.989 25.735 26.207 3.6749 73 44 3 0 0 0 0.68478 1 2535 2535 0.094841 0 1 114490 + 36608 20343 23159 23170 41799 41799 0.10345115413952044 RLFEKRYRYGR 11 Unmodified _RLFEKRYRYGR_ 0 0 0 REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS UPN47_class_I_Rep_2 3 515.6256103515625 3 515.291664 1542.85316 -0.30408 -0.00015669 -0.40269 -0.0002075 -0.70677 -0.00036419 515.2914054905685 22.754 0.77631 26.199 25.873 26.649 3.4447 146 71 3 0 0 0 0.68478 1 2822 2822 0.094841 0 1 88341 + 36609 20343 23159 23170 41800 41800 0.10345115413952044 RLFFFRRS 8 Unmodified _RLFFFRRS_ 0 0 0 REV__ENST00000592982.2_1_19:33794203-33794776:+|nuORF REV__ENST00000592982.2_1_19:33794203-33794776:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 564.7703247070312 2 564.824892 1127.63523 0.50919 0.0002876 1.7119 0.00096694 2.2211 0.0012545 564.8259617512205 51.555 0.39314 54.894 54.704 55.097 3.3386 25 18 2 0 0 0 0.82752 1 11373 11373 2.5775 0 1 73281 + 36610 23182 23160 23171 41801 41801 0.0765197028217699 RLFGCFAVLFL 11 Unmodified _RLFGCFAVLFL_ 0 0 0 REV__L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|53|2|anti-sense REV__L1MB7_dup2196|chr2:54995953-54996746:+|1.1984301650208942|0.0385429141358584|4.96|151.0|53|2|anti-sense MSMS UPN46_class_I_Rep_3 1 643.3616333007812 2 643.359919 1284.70529 NaN NaN NaN NaN NaN NaN NaN 54.749 1 54.749 54.249 55.249 0 0 0 0 0.38417 1 11870 11870 1.1933 0.12188 1 + 36611 26221 23161 23172 41802 41802 0.07432087835763923 RLFHKATV 8 Unmodified _RLFHKATV_ 0 0 0 MLT1F1_dup879|chr4:139873438-139873946:+|2.003942052476676|0.0571608532805427|5.13|150.0|21|1|anti-sense MLT1F1_dup879|chr4:139873438-139873946:+|2.003942052476676|0.0571608532805427|5.13|150.0|21|1|anti-sense MLT1F1_dup879|chr4:139873438-139873946:+|2.003942052476676|0.0571608532805427|5.13|150.0|21|1|anti-sense MSMS UPN46_class_I_Rep_3 1 486.2914733886719 2 486.292894 970.571235 NaN NaN NaN NaN NaN NaN NaN 80.893 1 80.893 80.393 81.393 0 0 0 0 0.40625 1 19078 19078 2.3027 0 1 36612 16391 23162 23173 41803 41803 0.08477190125211109 RLFHPHPHR 9 Unmodified _RLFHPHPHR_ 0 0 0 EIF2AK3|p.L875Tfs*57|1|0.1|ENSG00000172071|chr2:88574860-88574861|-/T|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3 EIF2AK3|p.L875Tfs*57|1|0.1|ENSG00000172071|chr2:88574860-88574861|-/T|frameshift_variant EIF2AK3|p.L875Tfs*57|1|0.1|ENSG00000172071|chr2:88574860-88574861|-/T|frameshift_variant MSMS UPN46_class_I_Rep_3 1 598.830322265625 2 598.83104 1195.64753 NaN NaN NaN NaN NaN NaN NaN 55.688 1 55.688 55.188 56.188 0 0 0 0 0.29868 1 12110 12110 10.824 0.75 1 36613 661 23163 23174 41804 41804 0.05753006745203493 RLFHYAIP 8 Unmodified _RLFHYAIP_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MSMS UPN46_class_I_Rep_3 1 508.78656005859375 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 24.04 1 24.04 23.54 24.54 0 0 0 0 0.40738 1 3104 3104 0.79363 0 1 + 36614 19557 23164 23175 41805 41805 0.053177877509369864 RLFKRYVA 8 Unmodified _RLFKRYVA_ 0 0 0 L1PA7_dup8925|chrY:13263830-13266051:-|1.9539238049866807|0.1167637972376721|4.06|85.0|39|2|sense L1PA7_dup8925|chrY:13263830-13266051:-|1.9539238049866807|0.1167637972376721|4.06|85.0|39|2|sense L1PA7_dup8925|chrY:13263830-13266051:-|1.9539238049866807|0.1167637972376721|4.06|85.0|39|2|sense MSMS UPN47_class_I_Rep_2 3 526.8218383789062 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 115.12 1 118.62 118.12 119.12 3.5039 0 0 0 0.40746 1 28058 28058 0.69038 0 1 36615 14906 23165 23176 41806 41806 0.10533452050663072 RLFLKFYRH 9 Unmodified _RLFLKFYRH_ 0 0 0 L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|118|2|anti-sense L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|118|2|anti-sense L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|118|2|anti-sense MSMS UPN48_class_I_Rep_3 7 640.37744140625 2 640.374749 1278.73495 NaN NaN NaN NaN NaN NaN NaN 118.25 1 121.83 121.33 122.33 3.5847 0 0 0 0.4007 1 28120 28120 0.52476 0 1 36616 8586 23166 23177 41807 41807 0.10672787896123737 RLFNLLGEH 9 Unmodified _RLFNLLGEH_ 0 0 0 REV__L1PA4_dup4494|chr6:45281108-45287253:+|1.4954711006093628|0.0477896836891083|4.97|151.0|210|1|anti-sense REV__L1PA4_dup4494|chr6:45281108-45287253:+|1.4954711006093628|0.0477896836891083|4.97|151.0|210|1|anti-sense MSMS UPN47_class_I_Rep_1 2 549.8165283203125 2 549.806365 1097.59818 NaN NaN NaN NaN NaN NaN NaN 12.558 1 16.008 15.508 16.508 3.45 0 0 0 0.39518 1 105 105 1.8442 0 1 + 36617 29639 23167 23178 41808 41808 0.053282539457541134 RLFPAFILS 9 Unmodified _RLFPAFILS_ 0 0 0 L1MB8_dup11123|chr11:76500276-76500916:+|1.5513959209886947|0.0641503133735678|4.6|151.0|33|2|anti-sense L1MB8_dup11123|chr11:76500276-76500916:+|1.5513959209886947|0.0641503133735678|4.6|151.0|33|2|anti-sense L1MB8_dup11123|chr11:76500276-76500916:+|1.5513959209886947|0.0641503133735678|4.6|151.0|33|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 531.8174438476562 2 532.318577 1062.6226 0.42114 0.00022418 0.3992 0.0002125 0.82034 0.00043668 532.3186725082365 79.361 0.21321 82.656 82.531 82.745 3.295 23 18 2 0 0 0 0.12462 1 19808 19808 1.8442 0 1 76391 36618 10907 23168 23179 41809 41809 0.0937951409928246 RLFQYLLY 8 Unmodified _RLFQYLLY_ 0 0 0 REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|138|1|anti-sense REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|138|1|anti-sense MSMS UPN48_class_I_Rep_2 6 558.31591796875 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 45.072 1 48.834 48.334 49.334 3.7617 0 0 0 0.40604 1 8664 8664 2.5775 0 1 + 36619 27335 23169 23180 41810 41810 0.06479210236648214 RLFRLIRSH 9 Unmodified _RLFRLIRSH_ 0 0 0 L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|275|3|anti-sense L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|275|3|anti-sense L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|275|3|anti-sense MSMS UPN46_class_I_Rep_3 1 599.37255859375 2 599.369998 1196.72544 NaN NaN NaN NaN NaN NaN NaN 92.544 1 92.544 92.044 93.044 0 0 0 0 0.39518 1 22399 22399 1.8442 1.2427 1 36620 13616 23170 23181 41811 41811 0.1349501961058195 RLFSSIVTV 9 Unmodified _RLFSSIVTV_ 0 0 0 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 MULTI-MSMS UPN47_class_I_Rep_3 4 511.3058166503906 2 511.305667 1020.59678 0.23157 0.00011841 0.62758 0.00032088 0.85915 0.00043929 511.30590924665967 62.565 1.2922 65.734 65.255 66.547 3.1698 131 82 3 0 0 0 0.20317 1 14866 14866 20.415 0 1 292390 36621 4295 23171 23182 41812 41812 0.08730619857010424 RLFYILLFL 9 Unmodified _RLFYILLFL_ 0 0 0 REV__AluJb_dup101268|chr16:22416307-22416613:+|1.9455257506251036|0.1224054612043607|3.99|151.0|18|3|anti-sense REV__AluJb_dup101268|chr16:22416307-22416613:+|1.9455257506251036|0.1224054612043607|3.99|151.0|18|3|anti-sense MSMS UPN46_class_I_Rep_3 1 599.3699951171875 2 599.373352 1196.73215 NaN NaN NaN NaN NaN NaN NaN 96.672 1 96.672 96.172 97.172 0 0 0 0 0.40038 1 23508 23508 0.6015 0 1 + 36622 16910 23172 23183 41813 41813 0.14165519718585529 RLFYRCSCL 9 Unmodified _RLFYRCSCL_ 0 0 0 L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|43|1|anti-sense L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|43|1|anti-sense L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_1 2 580.7894897460938 2 580.788804 1159.56305 NaN NaN NaN NaN NaN NaN NaN 29.855 1 33.613 33.113 34.113 3.7578 0 0 0 0.39518 1 4801 4801 1.8442 0 1 36623 11484 23173 23184 41814 41814 -0.010344481780748538 RLGALHVF 8 Unmodified _RLGALHVF_ 0 0 0 REV__MLT2B3_dup2829|chr15:30864706-30865308:-|1.441094256931516|0.0031993989098542|8.82|149.0|14|3|sense REV__MLT2B3_dup2829|chr15:30864706-30865308:-|1.441094256931516|0.0031993989098542|8.82|149.0|14|3|sense MSMS UPN48_class_I_Rep_2 6 456.7725524902344 2 456.774337 911.534121 NaN NaN NaN NaN NaN NaN NaN 77.912 1 81.534 81.034 82.034 3.6222 0 0 0 0.40738 1 18468 18468 0.79363 0 1 + 36624 31820 23174 23185 41815 41815 0.07481518579459134 RLGCNGLGFSD 11 Unmodified _RLGCNGLGFSD_ 0 0 0 nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A nc|ENSG00000186642|O00408-6|PDE2A nc|ENSG00000186642|O00408-6|PDE2A MSMS UPN47_class_I_Rep_3 4 569.7686157226562 2 569.769123 1137.52369 NaN NaN NaN NaN NaN NaN NaN 37.146 1 40.393 39.893 40.893 3.247 0 0 0 0.38417 1 7089 7089 1.3295 0.5359 1 36625 5161 23175 23186 41816 41816 -0.03956876927941266 RLGDVVRV 8 Unmodified _RLGDVVRV_ 0 0 0 ENST00000585735.1_1_17:40342468-40343067:-|nuORF;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC ENST00000585735.1_1_17:40342468-40343067:-|nuORF ENST00000585735.1_1_17:40342468-40343067:-|nuORF MSMS UPN47_class_I_Rep_1 2 457.2825012207031 2 457.282526 912.550499 NaN NaN NaN NaN NaN NaN NaN 35.846 1 39.522 39.022 40.022 3.6762 0 0 0 0.38875 1 6622 6622 12.241 0 1 36626 4337 23176 23187 41817 41817 0.09072599745559273 RLGELHHLY 9 Unmodified _RLGELHHLY_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS UPN47_class_I_Rep_2 3 569.312744140625 2 569.311815 1136.60908 0.046097 2.6243E-05 -0.59198 -0.00033702 -0.54588 -0.00031078 569.3114146754417 32.431 0.68819 35.886 35.626 36.314 3.4547 110 49 3 0 0 0 0.44858 1 5571 5571 5.2307 0.47466 1 184290 36627 4863 23177 23188 41818 41818 0.046236563200409364 RLGFCNWFR 9 Unmodified _RLGFCNWFR_ 0 0 0 ENST00000542038.5_1_12:21654737-21661387:+|nuORF ENST00000542038.5_1_12:21654737-21661387:+|nuORF ENST00000542038.5_1_12:21654737-21661387:+|nuORF MSMS UPN47_class_I_Rep_3 4 599.7987670898438 2 599.80056 1197.58657 NaN NaN NaN NaN NaN NaN NaN 48.625 1 51.859 51.359 52.359 3.2345 0 0 0 0.39518 1 10588 10588 1.8442 0 1 36628 7357 23178 23189 41819 41819 -0.00432266349253041 RLGKGLLL 8 Unmodified _RLGKGLLL_ 0 0 0 REV__L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|61|1|anti-sense REV__L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_1 2 435.3006896972656 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 66.04 1 69.397 68.897 69.897 3.3576 0 0 0 0.40746 1 15793 15793 0.69038 0 1 + 36629 24212 23179 23190 41820 41820 0.14627262273381803 RLGKGLLL 8 Unmodified _RLGKGLLL_ 0 0 0 REV__L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|61|1|anti-sense REV__L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|61|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 435.3004150390625 2 435.300188 868.585822 -0.43895 -0.00019107 0.54827 0.00023866 0.10932 4.7588E-05 435.3004213695495 65.907 0.59126 69.165 69.049 69.641 3.2588 43 33 2 0 0 0 0.82752 1 15935 15935 0.69038 0 1 199150 + 36630 24212 23179 23190 41821 41821 0.14627262273381803 RLGLRKLGLL 10 Unmodified _RLGLRKLGLL_ 0 0 0 ENST00000592514.5_3_19:10362578-10362897:+|nuORF ENST00000592514.5_3_19:10362578-10362897:+|nuORF ENST00000592514.5_3_19:10362578-10362897:+|nuORF MSMS UPN47_class_I_Rep_3 4 569.4259033203125 2 569.892775 1137.771 NaN NaN NaN NaN NaN NaN NaN 21.093 1 24.442 23.942 24.942 3.3496 0 0 0 0.53105 1 2300 2300 0.40072 0 1 36631 7632 23180 23191 41822 41822 0.20762245072978658 RLGPVPPGL 9 Unmodified _RLGPVPPGL_ 0 0 0 nc|ENSG00000146833|Q9C037-3|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037-3|TRIM4 MULTI-MSMS UPN47_class_I_Rep_2 3 453.2823181152344 2 453.281995 904.549437 -0.10842 -4.9144E-05 0.59744 0.00027081 0.48902 0.00022166 453.28192465459136 50.618 0.72346 53.957 53.476 54.2 3.3386 68 36 2 0 0 0 0.40174 3 11175 11050;11095;11175 7.9102 0 1 124010 36632 3448 23181 23192 41823;41824;41825 41825 0.09334385376666887 RLGRCEAL 8 Unmodified _RLGRCEAL_ 0 0 0 REV__AluSz_dup82308|chr16:30251511-30251822:+|4.913748987205641|0.3172958037709992|3.95|150.0|6|2|sense REV__AluSz_dup82308|chr16:30251511-30251822:+|4.913748987205641|0.3172958037709992|3.95|150.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 459.2423095703125 2 459.252911 916.49127 NaN NaN NaN NaN NaN NaN NaN 45.586 1 45.586 45.086 46.086 0 0 0 0 0.39408 1 9282 9282 10.183 0 1 + 36633 17209 23182 23193 41826 41826 0.02968380459731179 RLGTCSSQFVT 11 Unmodified _RLGTCSSQFVT_ 0 0 0 REV__L1ME3A_dup62|chr1:9703431-9703976:-|2.029892735783473|0.0149036362813725|7.09|151.0|28|2|anti-sense REV__L1ME3A_dup62|chr1:9703431-9703976:-|2.029892735783473|0.0149036362813725|7.09|151.0|28|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.7975463867188 2 599.79788 1197.58121 0.35312 0.0002118 0.7422 0.00044517 1.0953 0.00065697 600.2998861843033 48.221 0.30766 51.57 51.448 51.756 3.3492 18 14 2 0 0 0 0.67519 1 10444 10444 0.96228 0.36078 1 44677 + 36634 28022 23183 23194 41827 41827 -0.009680347223593344 RLGVFPMNTDC 11 Unmodified _RLGVFPMNTDC_ 0 0 0 REV__ENSG00000180182|ENST00000324817|MED14 REV__ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS UPN47_class_I_Rep_2 3 626.79345703125 2 626.794283 1251.57401 0.46028 0.0002885 -0.73068 -0.00045798 -0.2704 -0.00016948 626.7935954680022 61.497 0.56723 64.756 64.523 65.09 3.2594 56 33 2 0 0 0 0.65559 1 14461 14461 2.7352 0.23671 1 140460 + 36635 20697 23184 23195 41828 41828 -0.04171090594445559 RLHCAKKK 8 Unmodified _RLHCAKKK_ 0 0 0 AluJb_dup276|chr1:6052140-6052442:+|1.1740433285785317|0.0109641538918337|6.74|151.0|9|2|sense AluJb_dup276|chr1:6052140-6052442:+|1.1740433285785317|0.0109641538918337|6.74|151.0|9|2|sense AluJb_dup276|chr1:6052140-6052442:+|1.1740433285785317|0.0109641538918337|6.74|151.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 492.3011779785156 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 112.7 1 116.36 115.86 116.86 3.6648 0 0 0 0.40746 1 26864 26864 0.69038 0 1 36636 39 23185 23196 41829 41829 0.09384939001722614 RLHELRERR 9 Unmodified _RLHELRERR_ 0 0 0 ENST00000517870.1_1_1:53099041-53108627:+|nuORF ENST00000517870.1_1_1:53099041-53108627:+|nuORF ENST00000517870.1_1_1:53099041-53108627:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 421.9153747558594 3 422.249688 1263.72723 0.021051 8.8886E-06 -0.90036 -0.00038018 -0.87931 -0.00037129 422.2491816392259 38.566 0.43426 42.226 42.15 42.585 3.6595 57 42 2 0 0 0 0.12522 1 6623 6623 0.96228 0.26461 1 227720 36637 7211 23186 23197 41830 41830 0.1059202862852544 RLHFRKMR 8 Unmodified _RLHFRKMR_ 0 0 0 REV__MER1B_dup3710|chr11:76128092-76128426:+|1.4197124566446435|0.0509513506288537|4.8|151.0|18|2|anti-sense REV__MER1B_dup3710|chr11:76128092-76128426:+|1.4197124566446435|0.0509513506288537|4.8|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_3 7 572.3036499023438 2 572.337644 1142.66074 NaN NaN NaN NaN NaN NaN NaN 35.428 1 39.1 38.6 39.6 3.6721 0 0 0 0.40604 1 5742 5742 2.5775 0.51773 1 + 36638 31135 23187 23198 41831 41831 0.09511121532955258 RLHHFHDQ 8 Unmodified _RLHHFHDQ_ 0 0 0 REV__MER3_dup7908|chr13:28056700-28056913:-|3.002566476332237|0.0021651016262595|10.44|151.0|13|2|anti-sense REV__MER3_dup7908|chr13:28056700-28056913:-|3.002566476332237|0.0021651016262595|10.44|151.0|13|2|anti-sense MSMS UPN47_class_I_Rep_2 3 545.757080078125 2 545.270481 1088.52641 NaN NaN NaN NaN NaN NaN NaN 21.688 1 25.112 24.612 25.612 3.4241 0 0 0 0.40625 1 2461 2461 2.3027 0 1 + 36639 31251 23188 23199 41832 41832 -0.014312406881117568 RLHKPWLC 8 Unmodified _RLHKPWLC_ 0 0 0 REV__ENST00000468469.5_1_10:22605688-22605880:+|nuORF REV__ENST00000468469.5_1_10:22605688-22605880:+|nuORF MSMS UPN48_class_I_Rep_1 5 526.795654296875 2 526.794746 1051.57494 NaN NaN NaN NaN NaN NaN NaN 32.623 1 36.15 35.65 36.65 3.5266 0 0 0 0.40738 1 4983 4983 0.79363 0 1 + 36640 22489 23189 23200 41833 41833 0.05121536627439127 RLHKPWLC 8 Unmodified _RLHKPWLC_ 0 0 0 REV__ENST00000468469.5_1_10:22605688-22605880:+|nuORF REV__ENST00000468469.5_1_10:22605688-22605880:+|nuORF MSMS UPN48_class_I_Rep_2 6 526.7669677734375 2 526.794746 1051.57494 NaN NaN NaN NaN NaN NaN NaN 114.22 1 117.89 117.39 118.39 3.663 0 0 0 0.40738 1 27292 27292 0.79363 0 1 + 36641 22489 23189 23200 41834 41834 0.05121536627439127 RLHLFQYLKH 10 Unmodified _RLHLFQYLKH_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MSMS UPN48_class_I_Rep_2 6 452.26422119140625 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.56523 1 13179 13179 0.13989 0 1 500210 + 36642 17766 23190 23201 41835 41835 0.10424155579244143 RLHLHALY 8 Unmodified _RLHLHALY_ 0 0 0 REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|150|3|anti-sense REV__L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_3 7 511.798583984375 2 511.798343 1021.58213 NaN NaN NaN NaN NaN NaN NaN 113.85 1 117.5 117 118 3.6511 0 0 0 0.40738 1 27084 27084 0.79363 0 1 + 36643 29600 23191 23202 41836 41836 0.07220592499504619 RLHLHVFH 8 Unmodified _RLHLHVFH_ 0 0 0 REV__L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense REV__L1PA7_dup5284|chr6:80427218-80431838:-|1.052641656869998|0.1856390305882092|2.5|150.0|253|2|anti-sense MSMS UPN47_class_I_Rep_1 2 530.2554321289062 2 529.80396 1057.59337 NaN NaN NaN NaN NaN NaN NaN 25.872 1 29.635 29.135 30.135 3.7624 0 0 0 0.40738 1 3618 3618 0.79363 0 1 + 36644 30118 23192 23203 41837 41837 0.06687414593670837 RLHLKKKKRKK 11 Unmodified _RLHLKKKKRKK_ 0 0 0 AluSx1_dup104281|chr19:8494627-8494932:-|3.240058570691|0.1668082817326798|4.28|151.0|10|2|sense;AluSc8_dup11259|chrX:1506671-1506975:-|1.7767394622313433|0.0070362206200839|7.98|151.0|7|2|sense AluSx1_dup104281|chr19:8494627-8494932:-|3.240058570691|0.1668082817326798|4.28|151.0|10|2|sense AluSx1_dup104281|chr19:8494627-8494932:-|3.240058570691|0.1668082817326798|4.28|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 488.3427734375 3 488.343811 1462.0096 NaN NaN NaN NaN NaN NaN NaN 91.659 1 95.523 95.023 96.023 3.8634 0 0 0 0.38417 1 21737 21737 0 0 1 36645 207 23193 23204 41838 41838 0.29708025375066427 RLHLLPAP 8 Unmodified _RLHLLPAP_ 0 0 0 REV__ENST00000528797.5_1_11:57414569-57414981:-|nuORF REV__ENST00000528797.5_1_11:57414569-57414981:-|nuORF MSMS UPN48_class_I_Rep_3 7 458.7882080078125 2 458.789987 915.565421 NaN NaN NaN NaN NaN NaN NaN 84.543 1 88.292 87.792 88.792 3.7494 0 0 0 0.40604 1 20060 20060 2.5775 0 1 + 36646 22831 23194 23205 41839 41839 0.10426091613544486 RLHLTSAT 8 Unmodified _RLHLTSAT_ 0 0 0 REV__ENST00000536408.2_3_12:110338648-110338831:+|nuORF REV__ENST00000536408.2_3_12:110338648-110338831:+|nuORF MSMS UPN46_class_I_Rep_3 1 449.7605895996094 2 449.758884 897.503215 NaN NaN NaN NaN NaN NaN NaN 108.99 1 108.99 108.49 109.49 0 0 0 0 0.39996 1 26704 26704 7.9102 0 1 + 36647 22893 23195 23206 41840 41840 0.05036320474573586 RLHLVKAP 8 Unmodified _RLHLVKAP_ 0 0 0 REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF MSMS UPN48_class_I_Rep_3 7 467.30126953125 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 83.901 1 87.629 87.129 88.129 3.7281 0 0 0 0.40404 1 19904 19904 5.2307 0 1 + 36648 21878 23196 23207 41841 41841 0.12297780504889033 RLHMFLLY 8 Unmodified _RLHMFLLY_ 0 0 0 L1ME3_dup8211|chr18:46202926-46203596:+|1.0661498784360677|0.0046861961098606|7.83|151.0|43|3|anti-sense L1ME3_dup8211|chr18:46202926-46203596:+|1.0661498784360677|0.0046861961098606|7.83|151.0|43|3|anti-sense L1ME3_dup8211|chr18:46202926-46203596:+|1.0661498784360677|0.0046861961098606|7.83|151.0|43|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.2603149414062 2 546.80478 1091.59501 NaN NaN NaN NaN NaN NaN NaN 26.097 1 29.663 29.163 30.163 3.5667 0 0 0 0.40738 1 3148 3148 0.79363 0 1 36649 12605 23197 23208 41842 41842 0.0528728756739838 RLHRHPFQ 8 Unmodified _RLHRHPFQ_ 0 0 0 REV__THE1B-int_dup3834|chr15:76429279-76430857:+|1.3479975768188177|0.0202510132334174|6.06|151.0|59|1|anti-sense REV__THE1B-int_dup3834|chr15:76429279-76430857:+|1.3479975768188177|0.0202510132334174|6.06|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_3 4 545.8037719726562 2 545.804491 1089.59443 NaN NaN NaN NaN NaN NaN NaN 26.037 1 29.385 28.885 29.885 3.3478 0 0 0 0.40625 1 3751 3751 2.3027 1.5091 1 + 36650 32269 23198 23209 41843 41843 0.053216289625424906 RLHRSEFEE 9 Unmodified _RLHRSEFEE_ 0 0 0 REV__ENST00000510509.1_1_5:41870266-41870568:+|nuORF REV__ENST00000510509.1_1_5:41870266-41870568:+|nuORF MSMS UPN48_class_I_Rep_1 5 601.8017578125 2 601.799269 1201.58398 NaN NaN NaN NaN NaN NaN NaN 38.356 1 41.861 41.361 42.361 3.5052 0 0 0 0.39518 1 6635 6635 1.8442 0.36234 1 + 36651 22724 23199 23210 41844 41844 -0.00874443273187353 RLHSGHTQHR 10 Unmodified _RLHSGHTQHR_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN46_class_I_Rep_3 1 410.2181091308594 3 410.218388 1227.63333 -0.53729 -0.0002204 0.02519 1.0333E-05 -0.5121 -0.00021007 410.2183889258219 13.186 0.30482 13.186 13.064 13.369 0 90 35 3 0 0 0 0.53794 1 328 328 4.1166 0.52957 1 223960 + 36652 19418 23200 23211 41845 41845 0.028623095262673814 RLHWLVMRK 9 Unmodified _RLHWLVMRK_ 0 0 0 nc|ENSG00000171509|Q9HBX9-5|RXFP1 nc|ENSG00000171509|Q9HBX9-5|RXFP1 nc|ENSG00000171509|Q9HBX9-5|RXFP1 MULTI-SECPEP UPN48_class_I_Rep_3 7 620.3712768554688 2 619.868777 1237.723 0.6068 0.00037614 1.1002 0.00068198 1.707 0.0010581 619.8694726479835 85.789 0.1681 89.559 89.488 89.656 3.7701 19 17 2 0 0 0 0.12532 1 20372 20372 0.52476 0 1 69215 36653 16752 23201 23212 41846 41846 0.11364847881282003 RLIAAIVL 8 Unmodified _RLIAAIVL_ 0 0 0 ENSG00000104044|ENST00000354638|OCA2;nc|ENSG00000104044|Q04671-2|OCA2 ENSG00000104044|ENST00000354638|OCA2 ENSG00000104044|ENST00000354638|OCA2 MULTI-MSMS UPN46_class_I_Rep_3 1 434.8023681640625 2 434.802563 867.590573 0.090079 3.9167E-05 -0.41098 -0.00017869 -0.3209 -0.00013953 434.8023615273827 67.269 0.40508 67.269 66.971 67.376 0 63 38 2 0 0 0 0.82752 2 15291 15291;15335 8.5933 0 1 1527300 36654 1674 23202 23213 41847;41848 41847 0.15148146416106556 RLIAAIVL 8 Unmodified _RLIAAIVL_ 0 0 0 ENSG00000104044|ENST00000354638|OCA2;nc|ENSG00000104044|Q04671-2|OCA2 ENSG00000104044|ENST00000354638|OCA2 ENSG00000104044|ENST00000354638|OCA2 MSMS UPN47_class_I_Rep_1 2 434.802001953125 2 434.802563 867.590573 NaN NaN NaN NaN NaN NaN NaN 60.441 1 63.823 63.323 64.323 3.3815 0 0 0 0.40404 1 14106 14106 5.2307 0 1 36655 1674 23202 23213 41849 41849 0.15148146416106556 RLIAAIVL 8 Unmodified _RLIAAIVL_ 0 0 0 ENSG00000104044|ENST00000354638|OCA2;nc|ENSG00000104044|Q04671-2|OCA2 ENSG00000104044|ENST00000354638|OCA2 ENSG00000104044|ENST00000354638|OCA2 MSMS UPN47_class_I_Rep_2 3 434.8025207519531 2 434.802563 867.590573 NaN NaN NaN NaN NaN NaN NaN 60.638 1 63.904 63.404 64.404 3.2654 0 0 0 0.40404 1 14202 14202 5.2307 0 1 36656 1674 23202 23213 41850 41850 0.15148146416106556 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 115.4 1 119 118.5 119.5 3.5943 0 0 0 0.40746 1 28551 28551 0.69038 0 1 + 36657 25660 23203 23214 41851 41851 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 119.42 1 123.02 122.52 123.52 3.6036 0 0 0 0.40746 1 29673 29673 0.69038 0 1 + 36658 25660 23203 23214 41852 41852 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 111.33 1 114.85 114.35 115.35 3.5207 0 0 0 0.40746 1 27327 27327 0.69038 0 1 + 36659 25660 23203 23214 41853 41853 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 471.7950744628906 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 115.02 1 118.5 118 119 3.4802 0 0 0 0.40746 1 28267 28267 0.69038 0 1 + 36660 25660 23203 23214 41854 41854 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 46.143 1 49.662 49.162 50.162 3.5192 0 0 0 0.40746 1 8977 8977 0.69038 0 1 + 36661 25660 23203 23214 41855 41855 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 115.69 1 119.35 118.85 119.85 3.6607 0 0 0 0.40746 1 27696 27696 0.69038 0 1 + 36662 25660 23203 23214 41856 41856 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 116.31 1 119.97 119.47 120.47 3.6607 0 0 0 0.40746 1 27859 27859 0.69038 0 1 + 36663 25660 23203 23214 41857 41857 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 471.7951354980469 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 116.77 1 120.43 119.93 120.93 3.6607 0 0 0 0.40746 1 27973 27973 0.69038 0 1 + 36664 25660 23203 23214 41858 41858 0.1039228863688777 RLIAKARD 8 Unmodified _RLIAKARD_ 0 0 0 REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense REV__L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 471.79498291015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 111.7 1 115.36 114.86 115.86 3.6614 0 0 0 0.40746 1 26518 26518 0.69038 0 1 + 36665 25660 23203 23214 41859 41859 0.1039228863688777 RLICLQLQF 9 Unmodified _RLICLQLQF_ 0 0 0 REV__ENST00000432648.7_1_1:39469742-39469931:+|nuORF REV__ENST00000432648.7_1_1:39469742-39469931:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.32958984375 2 567.328619 1132.64269 NaN NaN NaN NaN NaN NaN NaN 85.863 1 89.479 88.979 89.979 3.6153 0 0 0 0.38639 1 21443 21443 3.9444 0 1 + 36666 22298 23204 23215 41860 41860 0.08166941767581193 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B nc|ENSG00000117139|Q9UGL1-2|KDM5B nc|ENSG00000117139|Q9UGL1-2|KDM5B MSMS UPN47_class_I_Rep_1 2 478.30059814453125 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 67.829 1 71.194 70.694 71.694 3.3646 0 0 0 0.28608 1 16336 16336 11.495 0.67078 1 36667 2212 23205 23216 41861 41861 0.10710637202555517 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B nc|ENSG00000117139|Q9UGL1-2|KDM5B nc|ENSG00000117139|Q9UGL1-2|KDM5B MULTI-MSMS UPN47_class_I_Rep_2 3 478.2999572753906 2 478.300384 954.586216 0.09963 4.7653E-05 -0.1774 -8.4852E-05 -0.077774 -3.7199E-05 478.3002853047826 68.157 0.53267 71.427 71.192 71.724 3.2696 68 45 2 0 0 0 0.32682 2 16473 16473;16485 12.241 2.1667 1 120510 36668 2212 23205 23216 41862;41863 41862 0.10710637202555517 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_1 2 523.2976684570312 2 523.298039 1044.58152 0.048311 2.5281E-05 -0.062787 -3.2856E-05 -0.014476 -7.575E-06 523.297931600163 45.909 0.75236 49.608 49.258 50.011 3.6999 103 43 3 0 0 0 0.14216 2 9697 9697;9737 26.268 3.6233 1 305580 36669 834 23206 23217 41864;41865 41864 0.061017082691250835 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_2 3 523.2979736328125 2 523.298039 1044.58152 -0.13968 -7.3095E-05 0.10135 5.3036E-05 -0.038332 -2.0059E-05 523.2980038160911 46.406 0.82385 49.757 49.407 50.231 3.3515 127 59 3 0 0 0 0.088679 2 9852 9852;9905 36.506 10.485 1 261720 36670 834 23206 23217 41866;41867 41866 0.061017082691250835 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN47_class_I_Rep_3 4 523.2979736328125 2 523.298039 1044.58152 0.19033 9.9601E-05 -0.27413 -0.00014345 -0.083799 -4.3852E-05 523.2978225727111 46.438 0.89125 49.682 49.307 50.199 3.2439 121 57 3 0 0 0 0.11355 2 9938 9938;9979 31.268 5.2476 1 259810 36671 834 23206 23217 41868;41869 41868 0.061017082691250835 RLIFFAMY 8 Unmodified _RLIFFAMY_ 0 0 0 REV__L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense REV__L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.7869262695312 2 530.786056 1059.55756 0.23054 0.00012237 0.65379 0.00034702 0.88432 0.00046939 530.7867637381445 63.085 0.061821 66.341 66.314 66.376 3.2558 7 4 2 0 0 0 0.82752 1 14946 14946 2.3027 0 1 29299 + 36672 26018 23207 23218 41870 41870 0.03016196301769014 RLIFFAMY 8 Unmodified _RLIFFAMY_ 0 0 0 REV__L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense REV__L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 530.786056 1059.55756 0.23054 0.00012237 0.65379 0.00034702 0.88432 0.00046939 530.7867637381445 63.085 0.061821 66.341 66.314 66.376 3.2558 0.14082 -0.0012012 NaN 2.3027 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 29299 + 36673 26018 23207 23218 0.03016196301769014 RLIFFAMY 8 Unmodified _RLIFFAMY_ 0 0 0 REV__L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense REV__L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 530.786056 1059.55756 0.3539 0.00018784 2.6359 0.0013991 2.9898 0.001587 530.7877198306146 62.889 0.09988 66.059 65.994 66.093 3.1698 -0.14082 0.00090301 NaN 2.3027 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 24935 + 36674 26018 23207 23218 0.03016196301769014 RLIFKKLHFF 10 Unmodified _RLIFKKLHFF_ 0 0 0 L1MC4a_dup5076|chr8:128006361-128006973:-|1.0842231154155506|0.0503056227172101|4.43|151.0|3|1|sense L1MC4a_dup5076|chr8:128006361-128006973:-|1.0842231154155506|0.0503056227172101|4.43|151.0|3|1|sense L1MC4a_dup5076|chr8:128006361-128006973:-|1.0842231154155506|0.0503056227172101|4.43|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 450.28094482421875 3 450.279926 1347.81795 NaN NaN NaN NaN NaN NaN NaN 61.109 1 64.622 64.122 65.122 3.5129 0 0 0 0.53105 1 13477 13477 0.15932 0 1 36675 11590 23208 23219 41871 41871 0.15795104624112355 RLIKDSLI 8 Unmodified _RLIKDSLI_ 0 0 0 LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|14|2|sense;LTR6A_dup91|chr9:62810354-62810882:+|2.560728124751358|0.0733316041245042|5.13|149.0|13|2|sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|14|2|sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.9748229980469 2 479.30821 956.601866 0.25358 0.00012154 -0.16538 -7.9268E-05 0.0882 4.2275E-05 479.3081217675336 62.806 0.12201 66.268 66.193 66.315 3.4625 11 7 2 0 0 0 0.82752 1 14076 14076 3.9444 0 1 76547 36676 15696 23209 23220 41872 41872 0.12182923719615246 RLIKDSLI 8 Unmodified _RLIKDSLI_ 0 0 0 LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|14|2|sense;LTR6A_dup91|chr9:62810354-62810882:+|2.560728124751358|0.0733316041245042|5.13|149.0|13|2|sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|14|2|sense LTR6A_dup90|chr9:41246016-41246544:+|1.0859343732808702|0.1039682195144272|3.38|149.0|14|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 478.9748229980469 2 479.30821 956.601866 0.25358 0.00012154 -0.16538 -7.9268E-05 0.0882 4.2275E-05 479.3081217675336 62.806 0.12201 66.268 66.193 66.315 3.4625 11 7 2 0 0 0 0.72333 1 14076 14076 3.9444 0 1 76547 36677 15696 23209 23220 41873 41873 0.12182923719615246 RLIKKHKKK 9 Unmodified _RLIKKHKKK_ 0 0 0 REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|48|2|sense REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|48|2|sense MSMS UPN47_class_I_Rep_3 4 589.9121704101562 2 589.914042 1177.81353 NaN NaN NaN NaN NaN NaN NaN 81.168 1 84.491 83.991 84.991 3.3231 0 0 0 0.4029 1 20309 20309 0 0 1 + 36678 27231 23210 23221 41874 41874 0.23173640201184753 RLIKRHKQVRT 11 Unmodified _RLIKRHKQVRT_ 0 0 0 REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.97491455078125 3 478.975788 1433.90553 0.094655 4.5338E-05 -1.6373 -0.00078425 -1.5427 -0.00073891 478.9749470447629 55.212 0.24586 58.767 58.597 58.842 3.5554 15 12 2 0 0 0 0.68024 1 11689 11689 0.50596 0 1 62324 + 36679 20258 23211 23222 41875 41875 0.20593698547577333 RLIKRHKQVRT 11 Unmodified _RLIKRHKQVRT_ 0 0 0 REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF MSMS UPN48_class_I_Rep_3 7 478.9751281738281 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 57.567 1 61.099 60.599 61.599 3.5317 0 0 0 0.38417 1 12395 12395 0.40827 0 1 + 36680 20258 23211 23222 41876 41876 0.20593698547577333 RLIKYFLKFFP 11 Unmodified _RLIKYFLKFFP_ 0 0 0 L1MEg_dup2339|chr2:210045211-210045906:-|1.068494137630593|0.1561204201930951|2.77|150.0|34|2|anti-sense L1MEg_dup2339|chr2:210045211-210045906:-|1.068494137630593|0.1561204201930951|2.77|150.0|34|2|anti-sense L1MEg_dup2339|chr2:210045211-210045906:-|1.068494137630593|0.1561204201930951|2.77|150.0|34|2|anti-sense MSMS UPN47_class_I_Rep_3 4 491.2992858886719 3 491.298986 1470.87513 NaN NaN NaN NaN NaN NaN NaN 116.14 1 119.61 119.11 120.11 3.462 0 0 0 0.38417 1 28574 28574 0.094841 0 1 36681 13376 23212 23223 41877 41877 0.15852527109814218 RLILDTSR 8 Unmodified _RLILDTSR_ 0 0 0 REV__ENSG00000196131|ENST00000341702|VN1R2 REV__ENSG00000196131|ENST00000341702|VN1R2 MSMS UPN46_class_I_Rep_3 1 487.2928161621094 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 86.891 1 86.891 86.391 87.391 0 0 0 0 0.40746 1 20791 20791 0.69038 0 1 + 36682 21016 23213 23224 41878 41878 0.0842456505440623 RLILHHHK 8 Unmodified _RLILHHHK_ 0 0 0 REV__L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|35|1|anti-sense REV__L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 527.3231811523438 2 527.32506 1052.63557 NaN NaN NaN NaN NaN NaN NaN 113.43 1 117.01 116.51 117.51 3.572 0 0 0 0.40746 1 27986 27986 0.69038 0 1 + 36683 26909 23214 23225 41879 41879 0.11135390002004897 RLILLPPQQV 10 Unmodified _RLILLPPQQV_ 0 0 0 REV__L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|10|1|sense REV__L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 588.885009765625 2 588.876791 1175.73903 NaN NaN NaN NaN NaN NaN NaN 55.91 1 55.91 55.41 56.41 0 0 0 0 0.53105 1 12171 12171 1.6526 0 1 + 36684 29590 23215 23226 41880 41880 0.15818832599165944 RLILRLFKRWE 11 Unmodified _RLILRLFKRWE_ 0 0 0 REV__HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|287|3|anti-sense REV__HERVK22-int_dup42|chr2:127370373-127375395:+|8.26575303371781|0.0685168560828195|6.91|151.0|287|3|anti-sense MSMS UPN46_class_I_Rep_3 1 510.5348815917969 3 510.652422 1528.93544 NaN NaN NaN NaN NaN NaN NaN 64.504 1 64.504 64.004 65.004 0 0 0 0 0.38417 1 14522 14522 0 0 1 + 36685 23814 23216 23227 41881 41881 0.19212637492887552 RLILWGAA 8 Unmodified _RLILWGAA_ 0 0 0 L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|246|1|anti-sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|246|1|anti-sense L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|246|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 450.2751159667969 2 450.276712 898.538872 0.14919 6.7177E-05 -3.7207 -0.0016753 -3.5715 -0.0016082 450.2752146116924 85.647 0.078148 89.353 89.291 89.369 3.7058 12 9 2 0 0 0 0.82752 1 20374 20374 0.79363 0 1 112490 36686 14909 23217 23228 41882 41882 0.08554402722211307 RLIPQSKNRS 10 Unmodified _RLIPQSKNRS_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|64|1|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|64|1|anti-sense MSMS UPN46_class_I_Rep_3 1 400.23822021484375 3 400.238678 1197.6942 NaN NaN NaN NaN NaN NaN NaN 109.54 1 109.54 109.04 110.04 0 0 0 0 0.53105 1 26915 26915 3.5871 1.0886 1 + 36687 32477 23218 23229 41883 41883 0.10326401785846429 RLIPQSKNRS 10 Unmodified _RLIPQSKNRS_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|64|1|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_1 2 400.2380065917969 3 400.238678 1197.6942 NaN NaN NaN NaN NaN NaN NaN 109.41 1 113.02 112.52 113.52 3.6046 0 0 0 0.53105 1 26988 26988 3.5871 1.6807 1 + 36688 32477 23218 23229 41884 41884 0.10326401785846429 RLIPQSKNRS 10 Unmodified _RLIPQSKNRS_ 0 0 0 REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|64|1|anti-sense REV__Tigger1_dup5764|chr7:92374936-92376436:-|2.0303160578505|0.0541065518787794|5.23|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_2 3 400.2378234863281 3 400.238678 1197.6942 NaN NaN NaN NaN NaN NaN NaN 109.35 1 112.88 112.38 113.38 3.5307 0 0 0 0.53105 1 26634 26634 3.5871 1.0886 1 + 36689 32477 23218 23229 41885 41885 0.10326401785846429 RLIQPVVP 8 Unmodified _RLIQPVVP_ 0 0 0 REV__ENST00000481804.5_1_16:775346-776019:-|nuORF REV__ENST00000481804.5_1_16:775346-776019:-|nuORF MSMS UPN47_class_I_Rep_2 3 461.29052734375 2 461.297645 920.580737 NaN NaN NaN NaN NaN NaN NaN 107.74 1 111.28 110.78 111.78 3.5345 0 0 0 0.39624 1 26076 26076 9.3474 0 1 + 36690 22570 23219 23230 41886 41886 0.11726958410747557 RLIQPVVP 8 Unmodified _RLIQPVVP_ 0 0 0 REV__ENST00000481804.5_1_16:775346-776019:-|nuORF REV__ENST00000481804.5_1_16:775346-776019:-|nuORF MSMS UPN47_class_I_Rep_2 3 461.29058837890625 2 461.297645 920.580737 NaN NaN NaN NaN NaN NaN NaN 107.75 1 111.29 110.79 111.79 3.5345 0 0 0 0.39624 1 26080 26080 9.3474 0 1 + 36691 22570 23219 23230 41887 41887 0.11726958410747557 RLIQPVVP 8 Unmodified _RLIQPVVP_ 0 0 0 REV__ENST00000481804.5_1_16:775346-776019:-|nuORF REV__ENST00000481804.5_1_16:775346-776019:-|nuORF MSMS UPN47_class_I_Rep_3 4 461.2908020019531 2 461.297645 920.580737 NaN NaN NaN NaN NaN NaN NaN 107.74 1 111.27 110.77 111.77 3.5382 0 0 0 0.39624 1 26306 26306 9.3474 0 1 + 36692 22570 23219 23230 41888 41888 0.11726958410747557 RLIQPVVP 8 Unmodified _RLIQPVVP_ 0 0 0 REV__ENST00000481804.5_1_16:775346-776019:-|nuORF REV__ENST00000481804.5_1_16:775346-776019:-|nuORF MSMS UPN48_class_I_Rep_3 7 461.29052734375 2 461.297645 920.580737 NaN NaN NaN NaN NaN NaN NaN 107.72 1 111.4 110.9 111.9 3.6813 0 0 0 0.39624 1 25414 25414 9.3474 0 1 + 36693 22570 23219 23230 41889 41889 0.11726958410747557 RLIQRCRN 8 Unmodified _RLIQRCRN_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|7|1|sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 529.80419921875 2 529.803634 1057.59272 NaN NaN NaN NaN NaN NaN NaN 21.349 1 24.995 24.495 25.495 3.6459 0 0 0 0.40746 1 2000 2000 0.69038 0 1 + 36694 30288 23220 23231 41890 41890 0.06622251882299679 RLIRDLFVH 9 Unmodified _RLIRDLFVH_ 0 0 0 REV__L1MC4_dup10831|chr7:92251502-92252380:-|1.1570078519331777|0.027982543395283|5.37|151.0|16|2|sense REV__L1MC4_dup10831|chr7:92251502-92252380:-|1.1570078519331777|0.027982543395283|5.37|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 584.849365234375 2 584.851107 1167.68766 NaN NaN NaN NaN NaN NaN NaN 33.049 1 33.049 32.549 33.549 0 0 0 0 0.40038 1 5734 5734 0.6015 0 1 + 36695 26799 23221 23232 41891 41891 0.11052508625130031 RLIRFFSY 8 Unmodified _RLIRFFSY_ 0 0 0 L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|364|2|anti-sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|364|2|anti-sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|364|2|anti-sense MSMS UPN48_class_I_Rep_1 5 551.3137817382812 2 551.313826 1100.6131 NaN NaN NaN NaN NaN NaN NaN 69.231 1 72.685 72.185 73.185 3.4548 0 0 0 0.39996 1 16045 16045 7.9102 0 1 36696 13840 23222 23233 41892 41892 0.06681745813762063 RLIRKKERR 9 Unmodified _RLIRKKERR_ 0 0 0 L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense MSMS UPN47_class_I_Rep_3 4 627.9176635742188 2 627.915104 1253.81566 NaN NaN NaN NaN NaN NaN NaN 59.005 1 62.171 61.671 62.671 3.1658 0 0 0 0.40098 1 13754 13754 0.45834 0 1 36697 14266 23223 23234 41893 41893 0.19890068939025696 RLIRKKERRIK 11 Unmodified _RLIRKKERRIK_ 0 0 0 L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense MSMS UPN46_class_I_Rep_3 1 499.3376770019531 3 499.338837 1494.99468 NaN NaN NaN NaN NaN NaN NaN 15.026 1 15.026 14.526 15.526 0 0 0 0 0.38417 1 777 777 0 0 1 36698 14266 23224 23235 41894 41894 0.26698533507101274 RLIRKKERRIK 11 Unmodified _RLIRKKERRIK_ 0 0 0 L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense MSMS UPN46_class_I_Rep_3 1 499.3382568359375 3 499.338837 1494.99468 NaN NaN NaN NaN NaN NaN NaN 15.179 1 15.179 14.679 15.679 0 0 0 0 0.38417 1 815 815 0 0 1 36699 14266 23224 23235 41895 41895 0.26698533507101274 RLIRKKERRIK 11 Unmodified _RLIRKKERRIK_ 0 0 0 L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|36|1|sense MSMS UPN46_class_I_Rep_3 1 499.3377380371094 3 499.338837 1494.99468 NaN NaN NaN NaN NaN NaN NaN 17.179 1 17.179 16.679 17.679 0 0 0 0 0.38417 1 1312 1312 0 0 1 36700 14266 23224 23235 41896 41896 0.26698533507101274 RLIRWFGF 8 Unmodified _RLIRWFGF_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense MSMS UPN47_class_I_Rep_3 4 547.8158569335938 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 24.375 1 27.726 27.226 28.226 3.3509 0 0 0 0.40738 1 3260 3260 0.79363 0.10326 1 + 36701 29084 23225 23236 41897 41897 0.0754546939622287 RLIRWFGF 8 Unmodified _RLIRWFGF_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense MSMS UPN47_class_I_Rep_3 4 547.3333129882812 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 113.53 1 117.02 116.52 117.52 3.4963 0 0 0 0.40738 1 27850 27850 0.79363 0 1 + 36702 29084 23225 23236 41898 41898 0.0754546939622287 RLIRWFGF 8 Unmodified _RLIRWFGF_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.8150634765625 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 20.859 1 24.404 23.904 24.904 3.5454 0 0 0 0.40738 1 1822 1822 0.79363 0 1 + 36703 29084 23225 23236 41899 41899 0.0754546939622287 RLIRWFGF 8 Unmodified _RLIRWFGF_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|340|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.8165893554688 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 24.305 1 28.074 27.574 28.574 3.769 0 0 0 0.40738 1 2792 2792 0.79363 0 1 + 36704 29084 23225 23236 41900 41900 0.0754546939622287 RLISQIYNY 9 Unmodified _RLISQIYNY_ 0 0 0 L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|95|2|anti-sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|95|2|anti-sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|95|2|anti-sense MSMS UPN47_class_I_Rep_1 2 585.76953125 2 585.319306 1168.62406 NaN NaN NaN NaN NaN NaN NaN 66.456 1 69.814 69.314 70.314 3.3576 0 0 0 0.39518 1 15920 15920 1.8442 0 1 36705 11327 23226 23237 41901 41901 0.04649103397377985 RLIYASLVP 9 Unmodified _RLIYASLVP_ 0 0 0 REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|280|2|anti-sense REV__L1PA7_dup7916|chrX:56805825-56812210:-|2.30110681533294|0.2517057007129796|3.19|151.0|280|2|anti-sense MSMS UPN48_class_I_Rep_1 5 516.3147583007812 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.34 1 110.97 110.47 111.47 3.6299 0 0 0 0.13551 1 25875 25875 20.454 1.1966 1 + 36706 30163 23227 23238 41902 41902 0.10343210236624145 RLKATTNV 8 Unmodified _RLKATTNV_ 0 0 0 REV__Charlie1a_dup3706|chr10:86494018-86494918:+|2.640535854813812|0.0603046735369124|5.45|151.0|50|3|anti-sense REV__Charlie1a_dup3706|chr10:86494018-86494918:+|2.640535854813812|0.0603046735369124|5.45|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_1 2 451.773193359375 2 451.774534 901.534515 NaN NaN NaN NaN NaN NaN NaN 22.051 1 25.725 25.225 26.225 3.6749 0 0 0 0.40746 1 2497 2497 0.69038 0 1 + 36707 17321 23228 23239 41903 41903 0.07980893508647569 RLKAVVKS 8 Unmodified _RLKAVVKS_ 0 0 0 REV__LTR41B_dup847|chr22:31695195-31695980:+|1.231352919115593|0.0425899989065008|4.85|151.0|41|3|anti-sense REV__LTR41B_dup847|chr22:31695195-31695980:+|1.231352919115593|0.0425899989065008|4.85|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 450.80108642578125 2 450.803094 899.591636 NaN NaN NaN NaN NaN NaN NaN 35.743 1 39.154 38.654 39.654 3.4114 0 0 0 0.40643 1 6625 6625 2.0598 0 1 + 36708 30925 23229 23240 41904 41904 0.13782360785035053 RLKCLRRYR 9 Unmodified _RLKCLRRYR_ 0 0 0 ENSG00000139620|ENST00000420613|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 MSMS UPN46_class_I_Rep_3 1 632.383544921875 2 632.382583 1262.75061 NaN NaN NaN NaN NaN NaN NaN 21.641 1 21.641 21.141 22.141 0 0 0 0 0.4007 1 2451 2451 0.52476 0.066424 1 36709 3146 23230 23241 41905 41905 0.12974751141518936 RLKCLRRYR 9 Unmodified _RLKCLRRYR_ 0 0 0 ENSG00000139620|ENST00000420613|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 MSMS UPN48_class_I_Rep_3 7 632.3814697265625 2 632.382583 1262.75061 NaN NaN NaN NaN NaN NaN NaN 66.183 1 69.691 69.191 70.191 3.5077 0 0 0 0.4007 1 15014 15014 0.52476 0.066424 1 36710 3146 23230 23241 41906 41906 0.12974751141518936 RLKDIQRR 8 Unmodified _RLKDIQRR_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MSMS UPN46_class_I_Rep_3 1 542.8382568359375 2 542.838531 1083.66251 NaN NaN NaN NaN NaN NaN NaN 12.759 1 12.759 12.259 13.259 0 0 0 0 0.40331 1 198 198 6.2058 0 1 36711 4638 23231 23242 41907 41907 0.12402453822551252 RLKGKPPL 8 Unmodified _RLKGKPPL_ 0 0 0 REV__ENSG00000143365|ENST00000318247|RORC REV__ENSG00000143365|ENST00000318247|RORC MSMS UPN47_class_I_Rep_3 4 454.7215270996094 2 454.805637 907.596721 NaN NaN NaN NaN NaN NaN NaN 55.086 1 58.264 57.764 58.764 3.1779 0 0 0 0.40738 1 12560 12560 0.79363 0 1 + 36712 19441 23232 23243 41908 41908 0.1392266464763452 RLKGPHAK 8 Unmodified _RLKGPHAK_ 0 0 0 ENST00000563230.1_1_16:79123974-79135149:+|nuORF ENST00000563230.1_1_16:79123974-79135149:+|nuORF ENST00000563230.1_1_16:79123974-79135149:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.78509521484375 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 75.765 1 79.168 78.668 79.668 3.4034 0 0 0 0.40798 1 18718 18718 0 0 1 36713 7470 23233 23244 41909 41909 0.0993632332802008 RLKGPHAK 8 Unmodified _RLKGPHAK_ 0 0 0 ENST00000563230.1_1_16:79123974-79135149:+|nuORF ENST00000563230.1_1_16:79123974-79135149:+|nuORF ENST00000563230.1_1_16:79123974-79135149:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.78509521484375 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 76.466 1 79.881 79.381 80.381 3.4149 0 0 0 0.40798 1 18925 18925 0 0 1 36714 7470 23233 23244 41910 41910 0.0993632332802008 RLKHEHIERRR 11 Unmodified _RLKHEHIERRR_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS UPN46_class_I_Rep_3 1 510.6343078613281 3 510.634313 1528.88111 0.31914 0.00016296 -0.13472 -6.8793E-05 0.18442 9.4169E-05 510.6340919015487 99.233 0.11063 99.233 99.182 99.293 0 21 9 3 0 0 0 0.68583 1 24173 24173 0 0 1 968200 36715 3850 23234 23245 41911 41911 0.13782438394036944 RLKHEHIERRR 11 Unmodified _RLKHEHIERRR_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS UPN47_class_I_Rep_1 2 510.63421630859375 3 510.634313 1528.88111 0.3578 0.0001827 -0.041276 -2.1077E-05 0.31652 0.00016163 510.6339885085977 97.732 0.27587 101.52 101.37 101.65 3.7861 75 37 3 0 0 0 0.68583 1 24236 24236 0 0 1 119280 36716 3850 23234 23245 41912 41912 0.13782438394036944 RLKHEHIERRR 11 Unmodified _RLKHEHIERRR_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS UPN47_class_I_Rep_2 3 510.634033203125 3 510.634313 1528.88111 0.32257 0.00016471 -0.030478 -1.5563E-05 0.29209 0.00014915 510.6340785298911 97.694 0.35822 101.18 100.98 101.34 3.4836 96 50 3 0 0 0 0.68583 1 23966 23966 0 0 1 125150 36717 3850 23234 23245 41913 41913 0.13782438394036944 RLKHYIVA 8 Unmodified _RLKHYIVA_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MSMS UPN47_class_I_Rep_3 4 500.3062438964844 2 500.308544 998.602535 NaN NaN NaN NaN NaN NaN NaN 111.69 1 115.21 114.71 115.71 3.5207 0 0 0 0.40738 1 27424 27424 0.79363 0 1 + 36718 19015 23235 23246 41914 41914 0.10317763159298465 RLKKKKKA 8 Unmodified _RLKKKKKA_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|11|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 500.3616638183594 2 500.361111 998.707669 0.29119 0.0001457 -0.51434 -0.00025735 -0.22314 -0.00011165 500.3604547860233 108.34 0.16229 112.02 111.97 112.13 3.6746 26 18 2 0 0 0 0.82752 1 25726 25726 0 0 1 2334100 36719 395 23236 23247 41915 41915 0.20826304355739467 RLKKKKKA 8 Unmodified _RLKKKKKA_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|11|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense MSMS UPN48_class_I_Rep_2 6 500.3703308105469 2 500.361111 998.707669 NaN NaN NaN NaN NaN NaN NaN 108.32 1 111.99 111.49 112.49 3.6746 0 0 0 0.40798 1 25677 25677 0 0 1 36720 395 23236 23247 41916 41916 0.20826304355739467 RLKKKKKA 8 Unmodified _RLKKKKKA_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|11|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 500.3599853515625 2 500.361111 998.707669 NaN NaN NaN NaN NaN NaN NaN 108.44 1 112.11 111.61 112.61 3.6751 0 0 0 0.40798 1 25663 25663 0 0 1 36721 395 23236 23247 41917 41917 0.20826304355739467 RLKKKKKA 8 Unmodified _RLKKKKKA_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|11|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 500.361111 998.707669 0.40939 0.00020484 -0.7379 -0.00036922 -0.32851 -0.00016437 500.36046551826075 108.43 0.05349 111.96 111.93 111.98 3.5333 0.037364 -0.00033234 NaN 0 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 986430 36722 395 23236 23247 0.20826304355739467 RLKKKKKA 8 Unmodified _RLKKKKKA_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|11|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 500.361111 998.707669 0.2943 0.00014726 -0.47192 -0.00023613 -0.17762 -8.8874E-05 500.36022247164163 108.26 0.10045 111.8 111.76 111.86 3.5382 -0.1229 -6.6174E-05 NaN 0 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1508000 36723 395 23236 23247 0.20826304355739467 RLKKKKKA 8 Unmodified _RLKKKKKA_ 0 0 0 L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|11|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense L1M2_dup40|chr1:35529203-35530046:-|1.4926427638171451|0.0784020349299579|4.25|151.0|14|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 500.361111 998.707669 0.25973 0.00012996 0.044394 2.2213E-05 0.30412 0.00015217 500.3607264101892 108.23 0.056778 111.91 111.88 111.94 3.6813 -0.011904 0.00045052 NaN 0 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1648800 36724 395 23236 23247 0.20826304355739467 RLKKKKRMEKD 11 Unmodified _RLKKKKRMEKD_ 0 0 0 L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|15|1|sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|15|1|sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 487.3030090332031 3 487.301172 1458.88169 NaN NaN NaN NaN NaN NaN NaN 110.3 1 113.97 113.47 114.47 3.67 0 0 0 0.38417 1 26175 26175 0.094841 0 1 36725 9591 23237 23248 41918 41918 0.1706009699889819 RLKKKKTK 8 Unmodified _RLKKKKTK_ 0 0 0 L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.3665771484375 2 515.366393 1028.71823 0.38371 0.00019775 0.039208 2.0207E-05 0.42291 0.00021796 515.3663189383866 108.3 0.27951 111.93 111.86 112.14 3.6355 88 27 4 0 0 0 0.82752 1 26638 26638 0.6015 0 1 10842000 36726 13146 23238 23249 41919 41919 0.20502287010162945 RLKKKKTK 8 Unmodified _RLKKKKTK_ 0 0 0 L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.3666381835938 2 515.366393 1028.71823 0.28265 0.00014567 0.3117 0.00016064 0.59435 0.00030631 515.3664458324629 108.42 0.14326 111.95 111.92 112.07 3.5333 34 14 3 0 0 0 0.82752 1 26308 26308 0.6015 0 1 10940000 36727 13146 23238 23249 41920 41920 0.20502287010162945 RLKKKKTK 8 Unmodified _RLKKKKTK_ 0 0 0 L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.366455078125 2 515.366393 1028.71823 0.34206 0.00017629 0.39347 0.00020278 0.73553 0.00037907 515.3665515631391 108.46 0.098412 111.99 111.95 112.05 3.5382 22 8 3 0 0 0 0.82752 1 26563 26563 0.6015 0 1 3817200 36728 13146 23238 23249 41921 41921 0.20502287010162945 RLKKKKTK 8 Unmodified _RLKKKKTK_ 0 0 0 L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.3665161132812 2 515.366393 1028.71823 0.24628 0.00012693 0.3185 0.00016414 0.56478 0.00029107 515.3664696196239 108.4 0.18231 112.03 111.95 112.13 3.6313 43 14 4 0 0 0 0.82752 1 26225 26225 0.6015 0 1 6493500 36729 13146 23238 23249 41922 41922 0.20502287010162945 RLKKKKTK 8 Unmodified _RLKKKKTK_ 0 0 0 L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|56|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.36669921875 2 515.366393 1028.71823 0.33684 0.0001736 0.64415 0.00033197 0.98099 0.00050557 515.3667059743136 108.42 0.11551 112.09 112.05 112.17 3.6751 18 9 2 0 0 0 0.82752 1 25673 25673 0.6015 0 1 11408000 36730 13146 23238 23249 41923 41923 0.20502287010162945 RLKKVHILRW 10 Unmodified _RLKKVHILRW_ 0 0 0 L1MC5_dup12764|chr16:3648737-3649481:-|1.4062836437268726|0.1159504214064894|3.6|151.0|6|1|sense L1MC5_dup12764|chr16:3648737-3649481:-|1.4062836437268726|0.1159504214064894|3.6|151.0|6|1|sense L1MC5_dup12764|chr16:3648737-3649481:-|1.4062836437268726|0.1159504214064894|3.6|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 450.29510498046875 3 450.294458 1347.86154 NaN NaN NaN NaN NaN NaN NaN 54.061 1 57.643 57.143 58.143 3.5817 0 0 0 0.53105 1 11390 11390 0.13989 0 1 36731 11667 23239 23250 41924 41924 0.2015271412126367 RLKLGQKQ 8 Unmodified _RLKLGQKQ_ 0 0 0 REV__L1PA10_dup2998|chr7:92884778-92887052:-|1.9432143589105817|0.0028299130419416|9.42|150.0|21|2|sense REV__L1PA10_dup2998|chr7:92884778-92887052:-|1.9432143589105817|0.0028299130419416|9.42|150.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 485.8113708496094 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.612 1 61.049 60.549 61.549 3.437 0 0 0 0.40746 1 13240 13240 0.69038 0 1 + 36732 28957 23240 23251 41925 41925 0.12232861670997863 RLKNHRWY 8 Unmodified _RLKNHRWY_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MSMS UPN46_class_I_Rep_3 1 586.824462890625 2 586.825424 1171.63629 NaN NaN NaN NaN NaN NaN NaN 106.52 1 106.52 106.02 107.02 0 0 0 0 0.40746 1 25976 25976 0.69038 0.088878 1 36733 6781 23241 23252 41926 41926 0.05734184651078067 RLKNLVLTY 9 Unmodified _RLKNLVLTY_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MSMS UPN46_class_I_Rep_3 1 560.3483276367188 2 560.347866 1118.68118 NaN NaN NaN NaN NaN NaN NaN 53.688 1 53.688 53.188 54.188 0 0 0 0 0.13551 1 11570 11570 20.454 4.6064 1 36734 3671 23242 23253 41927 41927 0.12658570673738723 RLKPIIIC 8 Unmodified _RLKPIIIC_ 0 0 0 Tigger1_dup6848|chr9:36348496-36349266:+|2.0241217357095302|0.3877300196123687|2.38|151.0|6|1|sense Tigger1_dup6848|chr9:36348496-36349266:+|2.0241217357095302|0.3877300196123687|2.38|151.0|6|1|sense Tigger1_dup6848|chr9:36348496-36349266:+|2.0241217357095302|0.3877300196123687|2.38|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 478.7245788574219 2 478.309698 954.604843 NaN NaN NaN NaN NaN NaN NaN 118.7 1 118.7 118.2 119.2 0 0 0 0 0.40738 1 29475 29475 0.79363 0 1 36735 33168 23243 23254 41928 41928 0.12572475572778785 RLKQKYGLYI 10 Unmodified _RLKQKYGLYI_ 0 0 0 REV__LTR49-int_dup1301|chr10:913924-914432:+|1.7673049604374944|0.0565114727983709|4.97|151.0|18|3|sense REV__LTR49-int_dup1301|chr10:913924-914432:+|1.7673049604374944|0.0565114727983709|4.97|151.0|18|3|sense MSMS UPN48_class_I_Rep_2 6 641.3861694335938 2 641.387522 1280.76049 NaN NaN NaN NaN NaN NaN NaN 94.219 1 97.995 97.495 98.495 3.7761 0 0 0 0.53105 1 22405 22405 1.6526 0.17072 1 + 36736 30943 23244 23255 41929 41929 0.13134217627884937 RLKQNKHV 8 Unmodified _RLKQNKHV_ 0 0 0 REV__THE1C-int_dup1427|chr12:45885948-45887049:-|1.400772795975445|0.0640697354800629|4.45|151.0|12|2|sense REV__THE1C-int_dup1427|chr12:45885948-45887049:-|1.400772795975445|0.0640697354800629|4.45|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 511.81536865234375 2 511.814525 1021.6145 NaN NaN NaN NaN NaN NaN NaN 90.425 1 90.425 89.925 90.925 0 0 0 0 0.40404 1 21807 21807 5.2307 2.6532 1 + 36737 28082 23245 23256 41930 41930 0.10455379902509776 RLKRLLPLIL 10 Unmodified _RLKRLLPLIL_ 0 0 0 HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|45|3|sense;HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|45|3|sense;HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|206|3|sense HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|45|3|sense MSMS UPN46_class_I_Rep_3 1 617.580810546875 2 617.939725 1233.8649 NaN NaN NaN NaN NaN NaN NaN 62.714 1 62.714 62.214 63.214 0 0 0 0 0.53105 1 14037 14037 0 0 1 36738 8067;8073 23246 23257 41931 41931 0.2573196417527015 RLKRRLFNRTP 11 Unmodified _RLKRRLFNRTP_ 0 0 0 REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|23|1|sense REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 486.3055114746094 3 486.303904 1455.88988 NaN NaN NaN NaN NaN NaN NaN 87.241 1 90.859 90.359 91.359 3.6187 0 0 0 0.38417 1 20904 20904 0.094841 0.011491 1 + 36739 24826 23247 23258 41932 41932 0.18017412030530977 RLKSIVLPIV 10 Unmodified _RLKSIVLPIV_ 0 0 0 REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|49|3|anti-sense REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|49|3|anti-sense MSMS UPN48_class_I_Rep_3 7 569.3895874023438 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 71.941 1 75.467 74.967 75.967 3.5266 0 0 0 0.53105 1 16739 16739 0.45834 0 1 + 36740 17305 23248 23259 41933 41933 0.2016030712159136 RLLAAAATR 9 Unmodified _RLLAAAATR_ 0 0 0 ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 ENSG00000147123|ENST00000377811|NDUFB11 ENSG00000147123|ENST00000377811|NDUFB11 MSMS UPN48_class_I_Rep_3 7 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 84.673 1 88.423 87.923 88.923 3.7494 0 0 0 0.39598 1 20095 20095 1.6526 0 1 36741 3460 23249 23260 41934 41934 0.1039228863688777 RLLAFPLL 8 Unmodified _RLLAFPLL_ 0 0 0 REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|42|1|sense REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|42|1|sense MSMS UPN47_class_I_Rep_2 3 471.79595947265625 2 471.810388 941.606223 NaN NaN NaN NaN NaN NaN NaN 89.318 1 92.771 92.271 93.271 3.4525 0 0 0 0.40604 1 22193 22193 2.5775 0 1 + 36742 23662 23250 23261 41935 41935 0.13308432933172298 RLLAPLLVPL 10 Unmodified _RLLAPLLVPL_ 0 0 0 REV__ENST00000543661.1_1_11:67231974-67232409:-|nuORF REV__ENST00000543661.1_1_11:67231974-67232409:-|nuORF MSMS UPN48_class_I_Rep_1 5 552.8766479492188 2 552.878802 1103.74305 NaN NaN NaN NaN NaN NaN NaN 74.636 1 78.126 77.626 78.626 3.49 0 0 0 0.53105 1 17643 17643 0.40072 0 1 + 36743 21694 23251 23262 41936 41936 0.19532922092889748 RLLARLIKRR 10 Unmodified _RLLARLIKRR_ 0 0 0 L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|8|1|sense L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|8|1|sense L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 647.94775390625 2 647.948947 1293.88334 NaN NaN NaN NaN NaN NaN NaN 108.39 1 112.03 111.53 112.53 3.6355 0 0 0 0.53105 1 26628 26628 0.40072 0 1 36744 13877 23252 23263 41937 41937 0.2481551886980924 RLLARVTD 8 Unmodified _RLLARVTD_ 0 0 0 REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 472.28802490234375 2 472.287808 942.561064 0.21111 9.9706E-05 -0.17302 -8.1714E-05 0.038095 1.7992E-05 472.28764798810084 86.491 0.98515 90.209 90.173 91.158 3.7171 202 137 2 0 0 0 0.82752 1 20655 20655 2.3027 0 1 1283400 + 36745 22508 23253 23264 41938 41938 0.08748582399982752 RLLAVGKW 8 Unmodified _RLLAVGKW_ 0 0 0 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 MSMS UPN47_class_I_Rep_1 2 471.7953186035156 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 26.765 1 30.531 30.031 31.031 3.7662 0 0 0 0.40604 1 3878 3878 2.5775 0 1 36746 4852 23254 23265 41939 41939 0.10794378130606219 RLLDYVATV 9 Unmodified _RLLDYVATV_ 0 0 0 ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|9|intron;ENSG00000115760|ENST00000421745|BIRC6;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|3|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|7|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|12|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron MULTI-MSMS UPN47_class_I_Rep_1 2 525.30322265625 2 525.303124 1048.5917 0.34239 0.00017986 -0.46665 -0.00024514 -0.12426 -6.5274E-05 525.3030518066661 60.718 0.56378 64.099 63.801 64.365 3.3815 68 53 2 0 0 0 0.36258 2 14207 14207;14239 10.151 0.88579 1 200520 36747 2140 23255 23266 41940;41941 41940 0.06934315994340068 RLLDYVATV 9 Unmodified _RLLDYVATV_ 0 0 0 ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|9|intron;ENSG00000115760|ENST00000421745|BIRC6;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|3|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|7|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|12|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron MULTI-MSMS UPN47_class_I_Rep_2 3 525.3033447265625 2 525.303124 1048.5917 0.11856 6.228E-05 0.43055 0.00022617 0.54911 0.00028845 525.3033993974875 61.037 0.70771 64.303 64.01 64.718 3.2654 80 59 2 0 0 0 0.12795 4 14299 14262;14299;14335;14377 28.495 4.5328 1 182370 36748 2140 23255 23266 41942;41943;41944;41945 41943 0.06934315994340068 RLLDYVATV 9 Unmodified _RLLDYVATV_ 0 0 0 ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|9|intron;ENSG00000115760|ENST00000421745|BIRC6;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|3|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|7|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|12|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron MULTI-MSMS UPN47_class_I_Rep_3 4 525.3026733398438 2 525.303124 1048.5917 0.28727 0.0001509 -0.2483 -0.00013044 0.038961 2.0466E-05 525.3031641154839 61.08 0.43239 64.245 64.145 64.577 3.1651 57 36 2 0 0 0 0.40701 1 14364 14364 7.609 0.50723 1 138670 36749 2140 23255 23266 41946 41946 0.06934315994340068 RLLELRERERE 11 Unmodified _RLLELRERERE_ 0 0 0 REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 MULTI-SECPEP UPN47_class_I_Rep_3 4 500.3130798339844 3 500.286468 1497.83757 -0.63615 -0.00031826 -0.085448 -4.2749E-05 -0.7216 -0.000361 500.6206563617001 14.134 0.22399 17.504 17.428 17.652 3.3697 49 25 3 0 0 0 22.551 1 486 486 0.094841 0 1 36735 + 36750 18270 23256 23267 41947 41947 0.10856784106226769 RLLEQKDIL 9 Unmodified _RLLEQKDIL_ 0 0 0 ENSG00000162378|ENST00000294353|ZYG11B ENSG00000162378|ENST00000294353|ZYG11B ENSG00000162378|ENST00000294353|ZYG11B MULTI-MSMS UPN47_class_I_Rep_2 3 564.34228515625 2 564.342781 1126.67101 0.097112 5.4805E-05 -0.13772 -7.7723E-05 -0.040611 -2.2919E-05 564.3427203469919 42.675 0.71814 46.036 45.596 46.314 3.3611 94 49 2 0 0 0 0.33908 2 8703 8631;8703 11.495 0 1 128830 36751 3925 23257 23268 41948;41949 41949 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-MSMS UPN47_class_I_Rep_1 2 564.3423461914062 2 564.342781 1126.67101 0.016341 9.2219E-06 -0.31647 -0.0001786 -0.30013 -0.00016937 564.3425666493797 42.13 0.78924 45.809 45.466 46.255 3.6792 98 52 2 0 0 0 0.2924 2 8540 8459;8540 14.405 2.7493 1 167610 36752 1543 23258 23269 41950;41951 41951 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-MSMS UPN47_class_I_Rep_2 3 564.3424072265625 2 564.342781 1126.67101 0.097112 5.4805E-05 -0.13772 -7.7723E-05 -0.040611 -2.2919E-05 564.3427203469919 42.675 0.71814 46.036 45.596 46.314 3.3611 94 49 2 0 0 0 0.36258 2 8753 8738;8753 10.151 2.5416 1 128830 36753 1543 23258 23269 41952;41953 41953 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-MSMS UPN47_class_I_Rep_3 4 564.8450317382812 2 564.342781 1126.67101 0.10607 5.9863E-05 -0.014408 -8.1308E-06 0.091667 5.1732E-05 564.3426706428875 42.934 0.72966 46.174 45.721 46.45 3.2394 87 48 2 0 0 0 0.25805 3 8807 8807;8850;8904 16.566 0 1 170750 36754 1543 23258 23269 41954;41955;41956 41954 0.11273962948507688 RLLETVIDV 9 Unmodified _RLLETVIDV_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MSMS UPN47_class_I_Rep_3 4 529.3159790039062 2 529.316232 1056.61791 NaN NaN NaN NaN NaN NaN NaN 63.325 1 66.495 65.995 66.995 3.1698 0 0 0 0.38073 1 15074 15074 5.2969 0 1 36755 4860 23259 23270 41957 41957 0.0918658516582127 RLLFCLFL 8 Unmodified _RLLFCLFL_ 0 0 0 L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|122|2|anti-sense L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|122|2|anti-sense L1MC5_dup8116|chr9:123536494-123538740:+|1.5088660655665596|0.0250940313864385|5.91|151.0|122|2|anti-sense MSMS UPN46_class_I_Rep_3 1 512.8035888671875 2 512.804248 1023.59394 NaN NaN NaN NaN NaN NaN NaN 32.389 1 32.389 31.889 32.889 0 0 0 0 0.40738 1 5535 5535 0.79363 0 1 36756 11699 23260 23271 41958 41958 0.08309073198472561 RLLFRHPR 8 Unmodified _RLLFRHPR_ 0 0 0 REV__ENST00000583492.1_1_17:79887626-79888002:+|nuORF REV__ENST00000583492.1_1_17:79887626-79888002:+|nuORF MSMS UPN48_class_I_Rep_3 7 547.8385009765625 2 547.838334 1093.66212 NaN NaN NaN NaN NaN NaN NaN 48.592 1 52.221 51.721 52.721 3.6291 0 0 0 0.40625 1 9665 9665 2.3027 0 1 + 36757 23133 23261 23272 41959 41959 0.11903078893351449 RLLGCWQC 8 Unmodified _RLLGCWQC_ 0 0 0 L1ME3_dup8409|chr19:34176314-34177393:-|1.3249607940145944|0.1355347531543776|3.29|151.0|27|2|sense;L1ME3B_dup2565|chr5:131368917-131369619:-|3.025656738570641|0.0629163725049776|5.59|151.0|25|3|sense L1ME3_dup8409|chr19:34176314-34177393:-|1.3249607940145944|0.1355347531543776|3.29|151.0|27|2|sense L1ME3_dup8409|chr19:34176314-34177393:-|1.3249607940145944|0.1355347531543776|3.29|151.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.73541259765625 2 489.73604 977.457527 -0.29652 -0.00014522 -0.38362 -0.00018787 -0.68014 -0.00033309 489.7355799606477 30.918 0.77086 34.648 34.323 35.094 3.73 121 63 3 0 0 0 0.82752 1 5172 5172 4.756 2.1785 1 176280 36758 12611 23262 23273 41960 41960 -0.032103643036862195 RLLHGAAR 8 Unmodified _RLLHGAAR_ 0 0 0 ENST00000397558.6_2_12:120427683-120428022:+|nuORF ENST00000397558.6_2_12:120427683-120428022:+|nuORF ENST00000397558.6_2_12:120427683-120428022:+|nuORF MSMS UPN46_class_I_Rep_3 1 447.282470703125 2 447.275035 892.535518 NaN NaN NaN NaN NaN NaN NaN 109.94 1 109.94 109.44 110.44 0 0 0 0 0.40604 1 27049 27049 2.5775 0 1 36759 6574 23263 23274 41961 41961 0.08495152668217543 RLLHPLQFKYL 11 Unmodified _RLLHPLQFKYL_ 0 0 0 REV__L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|120|3|anti-sense REV__L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|120|3|anti-sense MSMS UPN48_class_I_Rep_2 6 476.62396240234375 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 105.78 1 109.46 108.96 109.96 3.6834 0 0 0 0.38417 1 25022 25022 0.45452 0 1 + 36760 27697 23264 23275 41962 41962 0.1485416844466272 RLLHPLQFKYL 11 Unmodified _RLLHPLQFKYL_ 0 0 0 REV__L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|120|3|anti-sense REV__L1ME1_dup24752|chr14:56257592-56259448:+|1.4061016299136386|0.0317942394986642|5.47|151.0|120|3|anti-sense MSMS UPN48_class_I_Rep_3 7 476.6237487792969 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 105.21 1 108.91 108.41 109.41 3.702 0 0 0 0.38417 1 24832 24832 0.45452 0 1 + 36761 27697 23264 23275 41963 41963 0.1485416844466272 RLLHRRQKRII 11 Unmodified _RLLHRRQKRII_ 0 0 0 ENSG00000164099|ENST00000296498|PRSS12 ENSG00000164099|ENST00000296498|PRSS12 ENSG00000164099|ENST00000296498|PRSS12 MSMS UPN46_class_I_Rep_3 1 496.9045104980469 3 496.995182 1487.96372 NaN NaN NaN NaN NaN NaN NaN 61.197 1 61.197 60.697 61.697 0 0 0 0 0.38417 1 13607 13607 0 0 1 36762 4080 23265 23276 41964 41964 0.2392538019287258 RLLIIKLLK 9 Unmodified _RLLIIKLLK_ 0 0 0 L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 555.810791015625 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 31.239 1 31.239 30.739 31.739 0 0 0 0 0.4029 1 5193 5193 0 0 1 36763 15049 23266 23277 41965 41965 0.2559348788090574 RLLIIKLLK 9 Unmodified _RLLIIKLLK_ 0 0 0 L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 555.4105834960938 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 110.51 1 110.51 110.01 111.01 0 0 0 0 0.4029 1 27218 27218 0 0 1 36764 15049 23266 23277 41966 41966 0.2559348788090574 RLLIIKLLK 9 Unmodified _RLLIIKLLK_ 0 0 0 L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 555.4095458984375 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 116.13 1 116.13 115.63 116.63 0 0 0 0 0.4029 1 28737 28737 0 0 1 36765 15049 23266 23277 41967 41967 0.2559348788090574 RLLIIKLLK 9 Unmodified _RLLIIKLLK_ 0 0 0 L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense L1PB1_dup1403|chr2:138456634-138459299:+|1.203019036422855|0.0393398225735454|4.93|151.0|59|3|sense MSMS UPN47_class_I_Rep_2 3 555.4105224609375 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 110.71 1 114.23 113.73 114.73 3.5271 0 0 0 0.4029 1 26949 26949 0 0 1 36766 15049 23266 23277 41968 41968 0.2559348788090574 RLLIILRLLR 10 Unmodified _RLLIILRLLR_ 0 0 0 REV__nc|ENSG00000274391|P56180-4|TPTE REV__nc|ENSG00000274391|P56180-4|TPTE MSMS UPN48_class_I_Rep_1 5 639.9566650390625 2 639.958449 1277.90235 NaN NaN NaN NaN NaN NaN NaN 75.24 1 78.74 78.24 79.24 3.4996 0 0 0 0.53105 1 17815 17815 0 0 1 + 36767 21427 23267 23278 41969 41969 0.2745105544086073 RLLILRAP 8 Unmodified _RLLILRAP_ 0 0 0 nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1 nc|ENSG00000129657|Q92503-3|SEC14L1 nc|ENSG00000129657|Q92503-3|SEC14L1 MULTI-MSMS UPN47_class_I_Rep_2 3 476.3268127441406 2 476.326737 950.63892 0.32269 0.00015371 -0.13498 -6.4295E-05 0.18771 8.941E-05 476.32657850827337 108.31 1.0247 111.84 111.63 112.65 3.5333 174 111 2 0 0 0 0.82752 1 26277 26277 0.69038 0 1 26077000 36768 2626 23268 23279 41970 41970 0.16162640056029431 RLLILRAP 8 Unmodified _RLLILRAP_ 0 0 0 nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1 nc|ENSG00000129657|Q92503-3|SEC14L1 nc|ENSG00000129657|Q92503-3|SEC14L1 MULTI-MSMS UPN47_class_I_Rep_3 4 476.3268737792969 2 476.326737 950.63892 0.1045 4.9775E-05 0.06707 3.1947E-05 0.17157 8.1722E-05 476.32663934703965 108.35 0.78142 111.89 111.86 112.64 3.5382 153 86 2 0 0 0 0.82752 1 26512 26512 0.69038 0 1 21918000 36769 2626 23268 23279 41971 41971 0.16162640056029431 RLLIRARE 8 Unmodified _RLLIRARE_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2 nc|ENSG00000159899|P20594-2|NPR2 nc|ENSG00000159899|P20594-2|NPR2 MSMS UPN46_class_I_Rep_3 1 513.8291015625 2 513.830175 1025.6458 NaN NaN NaN NaN NaN NaN NaN 70.858 1 70.858 70.358 71.358 0 0 0 0 0.40746 1 16302 16302 0.69038 0 1 36770 3848 23269 23280 41972 41972 0.1339995293658376 RLLKHIQN 8 Unmodified _RLLKHIQN_ 0 0 0 REV__nc|ENSG00000103549|O75150-3|RNF40 REV__nc|ENSG00000103549|O75150-3|RNF40 MSMS UPN48_class_I_Rep_2 6 510.8902282714844 2 511.3169 1020.61925 NaN NaN NaN NaN NaN NaN NaN 72.622 1 76.187 75.687 76.687 3.5645 0 0 0 0.40746 1 17008 17008 0.69038 0 1 + 36771 18233 23270 23281 41973 41973 0.10976264045280004 RLLKILRA 8 Unmodified _RLLKILRA_ 0 0 0 REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__ENSG00000148408|ENST00000371372|CACNA1B REV__ENSG00000148408|ENST00000371372|CACNA1B MULTI-SECPEP UPN48_class_I_Rep_3 7 491.3091125488281 2 491.847836 981.681119 0.24363 0.00011983 0.22396 0.00011016 0.46759 0.00022998 491.8477246904517 108.67 0.55306 112.35 112.23 112.78 3.6751 96 63 2 0 0 0 0.72333 1 25781 25781 0 0 1 8236500 + 36772 19589;19392 23271 23282 41974 41974 0.18954615464417657 RLLKLSRH 8 Unmodified _RLLKLSRH_ 0 0 0 REV__Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|89|2|anti-sense REV__Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_3 7 512.3076171875 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 24.514 1 28.283 27.783 28.783 3.769 0 0 0 0.40753 1 2849 2849 0.6015 0 1 + 36773 32379 23272 23283 41975 41975 0.14092256799233382 RLLLAAAL 8 Unmodified _RLLLAAAL_ 0 0 0 REV__ENSG00000187773|ENST00000343998|DIPK1C REV__ENSG00000187773|ENST00000343998|DIPK1C MSMS UPN46_class_I_Rep_3 1 420.7855529785156 2 420.786913 839.559273 NaN NaN NaN NaN NaN NaN NaN 15.99 1 15.99 15.49 16.49 0 0 0 0 0.40798 1 1011 1011 0 0 1 + 36774 20941 23273 23284 41976 41976 0.1330757338200783 RLLLASASF 9 Unmodified _RLLLASASF_ 0 0 0 L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|147|1|anti-sense L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|147|1|anti-sense L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|147|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.2919006347656 2 489.292559 976.570566 0.19743 9.6603E-05 -0.090396 -4.423E-05 0.10704 5.2373E-05 489.2924801843381 58.98 0.44583 62.503 62.294 62.74 3.5231 50 29 2 0 0 0 0.40174 1 12872 12872 7.9102 0 1 101350 36775 14772 23274 23285 41977 41977 0.08134350685509162 RLLLAYVL 8 Unmodified _RLLLAYVL_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000415938.7_1_16:2152605-2162466:-|nuORF REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS UPN47_class_I_Rep_2 3 480.815185546875 2 480.81567 959.616788 0.14444 6.9448E-05 -0.35488 -0.00017063 -0.21044 -0.00010118 480.81546824883725 49.383 1.1955 52.729 52.245 53.44 3.3465 135 77 3 0 0 0 0.82752 1 10972 10972 2.8892 0 1 180590 + 36776 17556;22217 23275 23286 41978 41978 0.1353641558758909 RLLLCVFLW 9 Unmodified _RLLLCVFLW_ 0 0 0 REV__L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|31|1|anti-sense REV__L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 581.8442993164062 2 581.843905 1161.67326 NaN NaN NaN NaN NaN NaN NaN 89.375 1 93.204 92.704 93.704 3.8293 0 0 0 0.40038 1 21215 21215 0.6015 0 1 + 36777 25246 23276 23287 41979 41979 0.0988872015261677 RLLLGVQSA 9 Unmodified _RLLLGVQSA_ 0 0 0 REV__MLT1J_dup7518|chr8:94966610-94967061:-|1.256093874634295|0.0308018186618296|5.35|151.0|31|3|anti-sense REV__MLT1J_dup7518|chr8:94966610-94967061:-|1.256093874634295|0.0308018186618296|5.35|151.0|31|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.7977294921875 2 478.798009 955.581465 -0.10734 -5.1394E-05 -0.14725 -7.0505E-05 -0.25459 -0.0001219 478.7979461470896 46.93 0.37074 50.625 50.47 50.841 3.6951 27 20 2 0 0 0 0.39745 1 10005 10005 8.1555 0 1 43222 + 36778 31783 23277 23288 41980 41980 0.10189753059796658 RLLLHKLS 8 Unmodified _RLLLHKLS_ 0 0 0 REV__ENST00000302513.6_1_2:99758144-99758336:+|nuORF REV__ENST00000302513.6_1_2:99758144-99758336:+|nuORF MSMS UPN47_class_I_Rep_2 3 490.3223571777344 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 59.25 1 62.523 62.023 63.023 3.2731 0 0 0 0.40746 1 13777 13777 0.69038 0 1 + 36779 21676 23278 23289 41981 41981 0.1436633619340455 RLLLHKLS 8 Unmodified _RLLLHKLS_ 0 0 0 REV__ENST00000302513.6_1_2:99758144-99758336:+|nuORF REV__ENST00000302513.6_1_2:99758144-99758336:+|nuORF MSMS UPN47_class_I_Rep_3 4 490.32232666015625 2 490.324194 978.633835 NaN NaN NaN NaN NaN NaN NaN 59.067 1 62.233 61.733 62.733 3.1658 0 0 0 0.40746 1 13773 13773 0.69038 0 1 + 36780 21676 23278 23289 41982 41982 0.1436633619340455 RLLLIKVPGVV 11 Unmodified _RLLLIKVPGVV_ 0 0 0 REV__ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|71|2|sense REV__ERVL-int_dup695|chr14:53557375-53562143:+|1.1858581670150783|0.044484885375316|4.74|151.0|71|2|sense MSMS UPN47_class_I_Rep_3 4 603.9210815429688 2 603.918458 1205.82236 NaN NaN NaN NaN NaN NaN NaN 107.89 1 111.43 110.93 111.93 3.5382 0 0 0 0.38417 1 26361 26361 1.3295 0.92882 1 + 36781 23306 23279 23290 41983 41983 0.22768569047025267 RLLLKLHA 8 Unmodified _RLLLKLHA_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS UPN48_class_I_Rep_1 5 482.3251647949219 2 482.326737 962.63892 NaN NaN NaN NaN NaN NaN NaN 34.847 1 38.361 37.861 38.861 3.5144 0 0 0 0.40798 1 5627 5627 0 0 1 + 36782 17778 23280 23291 41984 41984 0.1561064005601338 RLLLLEKRRK 10 Unmodified _RLLLLEKRRK_ 0 0 0 L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|49|2|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|49|2|sense L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|49|2|sense MSMS UPN47_class_I_Rep_3 4 442.3135070800781 3 442.301501 1323.88267 NaN NaN NaN NaN NaN NaN NaN 35.124 1 38.387 37.887 38.887 3.2639 0 0 0 0.53105 1 6468 6468 0.69767 0 1 36783 8535 23281 23292 41985 41985 0.23368679430086559 RLLLLEKRRR 10 Unmodified _RLLLLEKRRR_ 0 0 0 L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|30|2|sense L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|30|2|sense L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 451.6371765136719 3 451.636883 1351.88882 NaN NaN NaN NaN NaN NaN NaN 53.555 1 57.075 56.575 57.575 3.5192 0 0 0 0.53105 1 11252 11252 0.15932 0.064481 1 36784 9531 23282 23293 41986 41986 0.22695197661619204 RLLLLWWK 8 Unmodified _RLLLLWWK_ 0 0 0 MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|24|2|anti-sense MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|24|2|anti-sense MSTB1_dup4352|chr20:34033344-34033761:-|1.5094892670510192|0.0206047855062334|6.19|151.0|24|2|anti-sense MSMS UPN46_class_I_Rep_3 1 564.3592529296875 2 564.358037 1126.70152 NaN NaN NaN NaN NaN NaN NaN 76.202 1 76.202 75.702 76.702 0 0 0 0 0.40746 1 17761 17761 0.69038 0.16561 1 36785 16584 23283 23294 41987 41987 0.1432378612419143 RLLLMPLL 8 Unmodified _RLLLMPLL_ 0 0 0 L1MB3_dup10300|chr10:63375832-63377428:+|3.8425215053945534|0.2086855148634211|4.2|151.0|71|1|anti-sense L1MB3_dup10300|chr10:63375832-63377428:+|3.8425215053945534|0.2086855148634211|4.2|151.0|71|1|anti-sense L1MB3_dup10300|chr10:63375832-63377428:+|3.8425215053945534|0.2086855148634211|4.2|151.0|71|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 485.2154541015625 2 484.819899 967.625244 0.29276 0.00014194 -0.52939 -0.00025666 -0.23663 -0.00011472 484.8196014801431 63.141 0.071365 66.615 66.569 66.64 3.4738 8 5 2 0 0 0 0.72333 1 14161 14161 0.69038 0 1 51299 36786 10310 23284 23295 41988 41988 0.14013646232569954 RLLLMPLLL 9 Unmodified _RLLLMPLLL_ 0 0 0 L1MB3_dup10300|chr10:63375832-63377428:+|3.8425215053945534|0.2086855148634211|4.2|151.0|71|1|anti-sense L1MB3_dup10300|chr10:63375832-63377428:+|3.8425215053945534|0.2086855148634211|4.2|151.0|71|1|anti-sense L1MB3_dup10300|chr10:63375832-63377428:+|3.8425215053945534|0.2086855148634211|4.2|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_1 5 541.3614501953125 2 541.36193 1080.70931 NaN NaN NaN NaN NaN NaN NaN 71.23 1 74.696 74.196 75.196 3.466 0 0 0 0.4007 1 16639 16639 0.52476 0 1 36787 10310 23285 23296 41989 41989 0.17218177329482387 RLLLRAAR 8 Unmodified _RLLLRAAR_ 0 0 0 ENST00000527392.5_1_11:8832827-8892612:-|nuORF REV__ENST00000595882.1_1_19:49692234-49693991:+|nuORF REV__ENST00000595882.1_1_19:49692234-49693991:+|nuORF MSMS UPN46_class_I_Rep_3 1 484.8258972167969 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 92.46 1 92.46 91.96 92.96 0 0 0 0 0.40746 1 22377 22377 0.69038 0 1 36788 7270 23286 23297 41990 41990 0.15520274144773794 RLLLRLIRMRR 11 Unmodified _RLLLRLIRMRR_ 0 0 0 REV__ENST00000472309.1_1_4:179208113-179208287:+|nuORF REV__ENST00000472309.1_1_4:179208113-179208287:+|nuORF MSMS UPN47_class_I_Rep_1 2 499.25592041015625 3 499.332918 1494.97692 NaN NaN NaN NaN NaN NaN NaN 41.073 1 44.745 44.245 45.245 3.6719 0 0 0 0.38417 1 8210 8210 0 0 1 + 36789 22507 23287 23298 41991 41991 0.2492349498056683 RLLLRSPEF 9 Unmodified _RLLLRSPEF_ 0 0 0 REV__ENST00000320316.7_1_17:7139851-7140732:-|nuORF REV__ENST00000320316.7_1_17:7139851-7140732:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 565.8377685546875 2 565.837665 1129.66078 0.61279 0.00034674 -0.55209 -0.00031239 0.060701 3.4347E-05 565.8372621442334 55.376 0.59322 58.932 58.396 58.989 3.5559 80 32 3 0 0 0 0.28552 1 11769 11769 14.838 0 1 346420 + 36790 21733 23288 23299 41992 41992 0.10113400013915452 RLLLYVHL 8 Unmodified _RLLLYVHL_ 0 0 0 REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|199|1|anti-sense REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|199|1|anti-sense MSMS UPN46_class_I_Rep_3 1 513.9208374023438 2 513.826569 1025.63859 NaN NaN NaN NaN NaN NaN NaN 74.701 1 74.701 74.201 75.201 0 0 0 0 0.40746 1 17338 17338 0.69038 0 1 + 36791 28970 23289 23300 41993 41993 0.12679220336167418 RLLMPSPRG 9 Unmodified _RLLMPSPRG_ 0 0 0 ENSG00000188282|ENST00000697321|RUFY4 ENSG00000188282|ENST00000697321|RUFY4 ENSG00000188282|ENST00000697321|RUFY4 MSMS UPN47_class_I_Rep_2 3 513.8065795898438 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 89.79 1 93.247 92.747 93.747 3.4571 0 0 0 0.38784 1 22301 22301 3.5965 0 1 36792 5225 23290 23301 41994 41994 0.06865215419247761 RLLMYDFF 8 Unmodified _RLLMYDFF_ 0 0 0 MLT1A_dup8424|chr19:11931145-11931518:-|3.657616333665604|0.1645071040749927|4.47|151.0|23|1|anti-sense MLT1A_dup8424|chr19:11931145-11931518:-|3.657616333665604|0.1645071040749927|4.47|151.0|23|1|anti-sense MLT1A_dup8424|chr19:11931145-11931518:-|3.657616333665604|0.1645071040749927|4.47|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2498779296875 2 552.78097 1103.54739 NaN NaN NaN NaN NaN NaN NaN 59.314 1 62.587 62.087 63.087 3.2731 0 0 0 0.40643 1 13797 13797 2.0598 0 1 36793 16242 23291 23302 41995 41995 -0.000244114234646986 RLLNAQHEH 9 Unmodified _RLLNAQHEH_ 0 0 0 REV__nc|ENSG00000116560|P23246-2|SFPQ REV__nc|ENSG00000116560|P23246-2|SFPQ MSMS UPN47_class_I_Rep_3 4 559.29541015625 2 559.296696 1116.57884 NaN NaN NaN NaN NaN NaN NaN 112.59 1 116.1 115.6 116.6 3.5098 0 0 0 0.39598 1 27630 27630 1.6526 0 1 + 36794 18607 23292 23303 41996 41996 0.025212976548345978 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.83135986328125 2 495.832186 989.649819 0.44792 0.00022209 -2.072 -0.0010274 -1.6241 -0.00080528 495.8311935321874 108.1 0.095146 111.64 111.61 111.71 3.5333 13 9 3 0 0 0 0.82752 1 26195 26195 2.5775 0 1 1909200 36795 9191 23293 23304 41997 41997 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.831298828125 2 495.832186 989.649819 0.44778 0.00022203 -2.0249 -0.001004 -1.5771 -0.00078199 495.8309676836152 108.32 0.2108 111.85 111.68 111.89 3.5333 29 18 2 0 0 0 0.82752 1 26237 26237 2.5775 0 1 1894100 36796 9191 23293 23304 41998 41998 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 495.832186 989.649819 0.2788 0.00013824 -2.1936 -0.0010877 -1.9148 -0.00094944 495.8310008956599 108.35 0.29875 111.99 111.78 112.08 3.6355 0.065029 -0.00015556 NaN 2.5775 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1093300 36797 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 495.832186 989.649819 0.27896 0.00013832 -1.7252 -0.00085539 -1.4462 -0.00071707 495.83107879620667 107.97 0.054382 111.61 111.57 111.63 3.6355 -0.11323 -2.9635E-06 NaN 2.5775 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 201030 36798 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 495.832186 989.649819 0.44778 0.00022203 -2.0249 -0.001004 -1.5771 -0.00078199 495.8309676836152 108.32 0.2108 111.85 111.68 111.89 3.5333 -0.068957 1.1753E-05 NaN 2.5775 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1894100 36799 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 495.832186 989.649819 0.44792 0.00022209 -2.072 -0.0010274 -1.6241 -0.00080528 495.8311935321874 108.1 0.095146 111.64 111.61 111.71 3.5333 -0.081084 -0.00034694 NaN 2.5775 13 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1909200 36800 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 495.832186 989.649819 0.27971 0.00013869 -1.8206 -0.00090273 -1.5409 -0.00076404 495.8311535797163 108.25 0.13676 111.79 111.73 111.87 3.5382 -0.13031 0.00021432 NaN 2.5775 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4605600 36801 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 495.832186 989.649819 0.17319 8.5871E-05 -1.9446 -0.00096419 -1.7714 -0.00087832 495.83117014302405 108.4 0.13261 112.03 111.95 112.08 3.6313 0.10854 9.1403E-05 NaN 2.5775 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 680440 36802 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 495.832186 989.649819 0.17322 8.5886E-05 -1.989 -0.00098619 -1.8157 -0.0009003 495.83096809786844 108.26 0.24578 111.89 111.68 111.93 3.6313 0.17035 -0.00026456 NaN 2.5775 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1677000 36803 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 495.832186 989.649819 0.27832 0.000138 -2.1203 -0.0010513 -1.842 -0.00091332 495.83103585043017 108.21 0.37998 111.88 111.72 112.1 3.6746 -0.036354 -8.2848E-05 NaN 2.5775 76 42 2 NaN NaN NaN NaN 0 NaN NaN 0 5009200 36804 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 495.832186 989.649819 0.25126 0.00012458 -1.8388 -0.00091173 -1.5875 -0.00078715 495.831052911156 108.3 0.39334 111.98 111.76 112.15 3.6813 0.062053 0.00019633 NaN 2.5775 50 38 3 NaN NaN NaN NaN 0 NaN NaN 0 5803000 36805 9191 23293 23304 0.15458042430316254 RLLPKVHK 8 Unmodified _RLLPKVHK_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|41|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 495.832186 989.649819 0.25098 0.00012444 -0.86704 -0.00042991 -0.61606 -0.00030546 495.83162954816953 108.06 0.080879 111.74 111.67 111.75 3.6813 0.023967 0.00084799 NaN 2.5775 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 938020 36806 9191 23293 23304 0.15458042430316254 RLLPLKLA 8 Unmodified _RLLPLKLA_ 0 0 0 REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 462.3210754394531 2 462.323663 922.632772 0.16481 7.6194E-05 -4.2955 -0.0019859 -4.1307 -0.0019097 462.3214509401551 107.45 0.042641 110.98 110.95 110.99 3.5345 7 5 2 0 0 0 0.82752 1 26000 26000 0.69038 0 1 12204000 + 36807 21681 23294 23305 41999 41999 0.16836121824485417 RLLPLKLA 8 Unmodified _RLLPLKLA_ 0 0 0 REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 462.323663 922.632772 0.16481 7.6194E-05 -4.2955 -0.0019859 -4.1307 -0.0019097 462.3214509401551 107.45 0.042641 110.98 110.95 110.99 3.5345 -0.062695 -0.0011643 NaN 0.69038 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 12204000 + 36808 21681 23294 23305 0.16836121824485417 RLLPLKLA 8 Unmodified _RLLPLKLA_ 0 0 0 REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 462.323663 922.632772 0.18843 8.7116E-05 -1.4258 -0.00065918 -1.2374 -0.00057207 462.32109961718214 107.43 0.032944 111.11 111.09 111.12 3.6813 0.062695 0.0014892 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 140340 + 36809 21681 23294 23305 0.16836121824485417 RLLQARHE 8 Unmodified _RLLQARHE_ 0 0 0 REV__ENST00000512291.5_1_17:48613811-48618261:+|nuORF REV__ENST00000512291.5_1_17:48613811-48618261:+|nuORF MSMS UPN47_class_I_Rep_3 4 511.7960205078125 2 511.796332 1021.57811 NaN NaN NaN NaN NaN NaN NaN 65.962 1 69.147 68.647 69.647 3.1853 0 0 0 0.40604 1 15877 15877 2.5775 0 1 + 36810 22747 23295 23306 42000 42000 0.06818503005797538 RLLQDSVDFSL 11 Unmodified _RLLQDSVDFSL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN46_class_I_Rep_3 1 646.845947265625 2 646.845884 1291.67722 NaN NaN NaN NaN NaN NaN NaN 74.273 1 74.273 73.773 74.773 0 0 0 0 0.00014239 1 17228 17228 44.945 25.583 1 36811 824 23296 23307 42001 42001 0.043044363893841364 RLLQVLLLLLA 11 Unmodified _RLLQVLLLLLA_ 0 0 0 REV__ENST00000555171.1_1_14:60622706-60632135:-|nuORF REV__ENST00000555171.1_1_14:60622706-60632135:-|nuORF MSMS UPN48_class_I_Rep_3 7 632.9404907226562 2 632.939391 1263.86423 NaN NaN NaN NaN NaN NaN NaN 66.557 1 70.065 69.565 70.565 3.5077 0 0 0 0.38417 1 15126 15126 0 0 1 + 36812 18125 23297 23308 42002 42002 0.24285124735592944 RLLRARAL 8 Unmodified _RLLRARAL_ 0 0 0 REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF MSMS UPN47_class_I_Rep_1 2 484.8160705566406 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 61.949 1 65.317 64.817 65.817 3.3681 0 0 0 0.40404 1 14560 14560 5.2307 0 1 + 36813 21497 23298 23309 42003 42003 0.15520274144773794 RLLRCWIV 8 Unmodified _RLLRCWIV_ 0 0 0 ENST00000511143.5_1_13:33092057-33112774:-|nuORF ENST00000511143.5_1_13:33092057-33112774:-|nuORF ENST00000511143.5_1_13:33092057-33112774:-|nuORF MSMS UPN48_class_I_Rep_3 7 529.8162231445312 2 529.818221 1057.62189 NaN NaN NaN NaN NaN NaN NaN 119.59 1 123.16 122.66 123.66 3.566 0 0 0 0.40738 1 28421 28421 0.79363 0 1 36814 7186 23299 23310 42004 42004 0.09538396178550101 RLLRRLAA 8 Unmodified _RLLRRLAA_ 0 0 0 REV__ENSG00000160224|ENST00000291582|AIRE REV__ENSG00000160224|ENST00000291582|AIRE MSMS UPN47_class_I_Rep_2 3 484.8157043457031 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 61.388 1 64.653 64.153 65.153 3.2654 0 0 0 0.40746 1 14427 14427 0.69038 0 1 + 36815 19880 23300 23311 42005 42005 0.15520274144773794 RLLRVGQF 8 Unmodified _RLLRVGQF_ 0 0 0 REV__ENST00000432857.2_1_3:9792686-9793638:+|nuORF REV__ENST00000432857.2_1_3:9792686-9793638:+|nuORF MSMS UPN46_class_I_Rep_3 1 494.82012939453125 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 19.729 1 19.729 19.229 20.229 0 0 0 0 0.40746 1 1930 1930 0.69038 0 1 + 36816 18520 23301 23312 42006 42006 0.10348879016567025 RLLTSMYFQ 9 Unmodified _RLLTSMYFQ_ 0 0 0 nc|ENSG00000149488|Q8TDI7-4|TMC2;ENSG00000149488|ENST00000358864|TMC2 nc|ENSG00000149488|Q8TDI7-4|TMC2 nc|ENSG00000149488|Q8TDI7-4|TMC2 MSMS UPN48_class_I_Rep_2 6 579.8660278320312 2 579.802434 1157.59032 NaN NaN NaN NaN NaN NaN NaN 110.64 1 114.31 113.81 114.81 3.669 0 0 0 0.39518 1 26319 26319 1.8442 0 1 36817 3543 23302 23313 42007 42007 0.017823586339545727 RLLWILRPFF 10 Unmodified _RLLWILRPFF_ 0 0 0 L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|82|1|anti-sense L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|82|1|anti-sense L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.2796630859375 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 53.556 1 56.882 56.382 57.382 3.3266 0 0 0 0.53105 1 12036 12036 0.15932 0 1 36818 11471 23303 23314 42008 42008 0.15243104624119042 RLLWILRPFF 10 Unmodified _RLLWILRPFF_ 0 0 0 L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|82|1|anti-sense L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|82|1|anti-sense L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|82|1|anti-sense MSMS UPN48_class_I_Rep_3 7 454.2798156738281 3 454.279926 1359.81795 NaN NaN NaN NaN NaN NaN NaN 40.711 1 44.362 43.862 44.862 3.6509 0 0 0 0.53105 1 7273 7273 2.086 0 1 36819 11471 23303 23314 42009 42009 0.15243104624119042 RLLWPHGL 8 Unmodified _RLLWPHGL_ 0 0 0 L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|67|1|anti-sense L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|67|1|anti-sense L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|67|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29541015625 2 496.295436 990.57632 0.094155 4.6728E-05 0.44883 0.00022275 0.54299 0.00026948 496.2956184013544 32.206 0.092659 32.206 32.126 32.219 0 10 6 2 0 0 0 0.82752 1 5478 5478 0.69038 0.69038 1 241430 36820 15313 23304 23315 42010 42010 0.08065493987851369 RLLWWRWG 8 Unmodified _RLLWWRWG_ 0 0 0 REV__TRIM28|p.P510Qfs*166|1|0.3|ENSG00000130726|chr19:58549105-58549105|C/-|frameshift_variant REV__TRIM28|p.P510Qfs*166|1|0.3|ENSG00000130726|chr19:58549105-58549105|C/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 586.8253173828125 2 586.827435 1171.64032 NaN NaN NaN NaN NaN NaN NaN 80.236 1 80.236 79.736 80.736 0 0 0 0 0.40746 1 18891 18891 0.69038 0 1 + 36821 32818 23305 23316 42011 42011 0.06136274144773779 RLMEEQERI 9 Unmodified _RLMEEQERI_ 0 0 0 REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF MSMS UPN46_class_I_Rep_3 1 401.8778991699219 3 401.876529 1202.60776 NaN NaN NaN NaN NaN NaN NaN 25.913 1 25.913 25.413 26.413 0 0 0 0 0.38478 1 3627 3627 2.4985 0 1 + 36822 23038 23306 23317 42012 42012 0.014556541689671576 RLMKDRHKK 9 Unmodified _RLMKDRHKK_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.361083984375 2 606.361316 1210.70808 0.60693 0.00036802 0.058445 3.5439E-05 0.66538 0.00040346 606.3606891550822 109.69 0.56599 109.69 109.56 110.13 0 113 46 3 0 0 0 0.42249 1 27075 27075 6.7232 1.4263 1 4091400 + 36823 22414 23307 23318 42013 42013 0.1111535601326068 RLMKDRHKK 9 Unmodified _RLMKDRHKK_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 606.3612670898438 2 606.361316 1210.70808 0.5293 0.00032094 0.37925 0.00022996 0.90854 0.00055091 606.3610154830056 108.65 0.44345 112.28 112.17 112.62 3.6355 146 45 4 0 0 0 0.37599 1 26788 26788 9.3831 0 1 73343000 + 36824 22414 23307 23318 42014 42014 0.1111535601326068 RLMKDRHKK 9 Unmodified _RLMKDRHKK_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 606.3611450195312 2 606.361316 1210.70808 0.6349 0.00038498 0.43563 0.00026415 1.0705 0.00064913 606.3609626437168 108.66 0.66357 112.19 112.08 112.74 3.5333 239 78 4 0 0 0 0.42249 1 26442 26442 6.7232 0.51738 1 60102000 + 36825 22414 23307 23318 42015 42015 0.1111535601326068 RLMKDRHKK 9 Unmodified _RLMKDRHKK_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 606.361328125 2 606.361316 1210.70808 0.51 0.00030924 0.57891 0.00035103 1.0889 0.00066027 606.3610174317315 108.67 0.68752 112.21 112.08 112.77 3.5382 232 80 4 0 0 0 0.42249 1 26634 26634 6.7232 0.51738 1 58762000 + 36826 22414 23307 23318 42016 42016 0.1111535601326068 RLMKDRHKK 9 Unmodified _RLMKDRHKK_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 606.361572265625 2 606.361316 1210.70808 0.48839 0.00029614 0.49626 0.00030091 0.98465 0.00059705 606.360882781156 108.69 0.70425 112.36 112.23 112.93 3.6746 197 75 3 0 0 0 0.42249 1 25814 25814 6.7232 0.51738 1 29446000 + 36827 22414 23307 23318 42017 42017 0.1111535601326068 RLMKRHRQVW 10 Unmodified _RLMKRHRQVW_ 0 0 0 REV__ENSG00000108702|ENST00000225842|CCL1 REV__ENSG00000108702|ENST00000225842|CCL1 MULTI-MSMS UPN48_class_I_Rep_3 7 470.9403381347656 3 470.606818 1408.79863 0.06379 3.002E-05 -0.55609 -0.0002617 -0.4923 -0.00023168 470.6064563318209 54.59 0.82714 58.159 57.577 58.404 3.5694 85 54 2 0 0 0 0.56444 1 11479 11479 0.69767 0.19171 1 168580 + 36828 18391 23308 23319 42018 42018 0.11057825061539006 RLMKRRKII 9 Unmodified _RLMKRRKII_ 0 0 0 REV__ENSG00000122644|ENST00000651779|ARL4A REV__ENSG00000122644|ENST00000651779|ARL4A MSMS UPN48_class_I_Rep_1 5 405.27362060546875 3 405.272777 1212.7965 NaN NaN NaN NaN NaN NaN NaN 76.799 1 80.31 79.81 80.81 3.5102 0 0 0 0.40191 1 18249 18249 0.23584 0 1 + 36829 18755 23309 23320 42019 42019 0.19861396323767622 RLMLLLLLLLF 11 Unmodified _RLMLLLLLLLF_ 0 0 0 REV__L1MC4_dup8993|chr6:38040570-38041621:-|1.4952667857637865|0.0086255342081473|7.44|151.0|63|2|anti-sense REV__L1MC4_dup8993|chr6:38040570-38041621:-|1.4952667857637865|0.0086255342081473|7.44|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_2 3 453.30511474609375 3 453.304972 1356.89309 NaN NaN NaN NaN NaN NaN NaN 118.68 1 122.16 121.66 122.66 3.4822 0 0 0 0.38417 1 29048 29048 0.094841 0 1 + 36830 26954 23310 23321 42020 42020 0.22891526040348253 RLMRPAALW 9 Unmodified _RLMRPAALW_ 0 0 0 REV__ENSG00000177302.15,TOP3A,chr17,-,I12.1,18291028,18292644|26|4.9|2|intron REV__ENSG00000177302.15,TOP3A,chr17,-,I12.1,18291028,18292644|26|4.9|2|intron MSMS UPN47_class_I_Rep_1 2 557.3193359375 2 557.321128 1112.6277 NaN NaN NaN NaN NaN NaN NaN 98.457 1 102.25 101.75 102.75 3.7926 0 0 0 0.40038 1 24373 24373 0.6015 0 1 + 36831 20615 23311 23322 42021 42021 0.07589494690228094 RLMTFGWGFF 10 Unmodified _RLMTFGWGFF_ 0 0 0 L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|242|1|anti-sense L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|242|1|anti-sense L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|242|1|anti-sense MSMS UPN48_class_I_Rep_3 7 631.313232421875 2 631.312969 1260.61138 NaN NaN NaN NaN NaN NaN NaN 34.349 1 38.029 37.529 38.529 3.6797 0 0 0 0.53105 1 5447 5447 1.8442 0.36234 1 36832 14951 23312 23323 42022 42022 -0.008496312665101868 RLNDGYGSSR 10 Unmodified _RLNDGYGSSR_ 0 0 0 REV__MER57D_dup91|chr3:186981091-186981434:-|1.6506026810049854|0.0145668690447537|6.82|151.0|27|3|anti-sense REV__MER57D_dup91|chr3:186981091-186981434:-|1.6506026810049854|0.0145668690447537|6.82|151.0|27|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 563.0276489257812 2 562.775793 1123.53703 -0.18876 -0.00010623 1.6367 0.00092107 1.4479 0.00081484 562.7769143832352 29.783 0.27332 33.106 33.036 33.309 3.3235 31 22 2 0 0 0 0.84575 1 4848 4848 2.9952 0 1 58528 + 36833 31454 23313 23324 42023 42023 -0.01979302824338447 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 486.7772216796875 2 486.777274 971.539994 0.24155 0.00011758 -0.1309 -6.372E-05 0.11065 5.3862E-05 486.77717318460816 39.779 0.57781 39.779 39.548 40.126 0 87 58 2 0 0 0 0.12096 1 7663 7663 29.841 2.2118 1 368600 36834 4278 23314 23325 42024 42024 0.05308572300475589 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.77716064453125 2 486.777274 971.539994 -0.28733 -0.00013987 0.08856 4.3109E-05 -0.19877 -9.6756E-05 486.77726942130147 35.145 0.83496 38.821 38.464 39.299 3.6762 163 60 4 0 0 0 0.048662 3 6406 6406;6443;6484 49.554 15.153 1 662440 36835 4278 23314 23325 42025;42026;42027 42025 0.05308572300475589 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 486.7770080566406 2 486.777274 971.539994 -0.14928 -7.2664E-05 -0.045336 -2.2068E-05 -0.19461 -9.4733E-05 486.77719244511843 35.367 1.059 38.792 38.47 39.529 3.4253 162 70 3 0 0 0 0.12096 2 6522 6445;6522 29.841 2.2118 1 633650 36836 4278 23314 23325 42028;42029 42029 0.05308572300475589 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.7769775390625 2 486.777274 971.539994 -0.38738 -0.00018857 0.091495 4.4537E-05 -0.29588 -0.00014403 486.77727828527213 35.564 1.007 38.819 38.467 39.474 3.2547 165 70 3 0 0 0 0.048662 2 6597 6597;6635 49.554 15.153 1 680830 36837 4278 23314 23325 42030;42031 42030 0.05308572300475589 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 486.777274 971.539994 0.24155 0.00011758 -0.1309 -6.372E-05 0.11065 5.3862E-05 486.77717318460816 39.779 0.57781 39.779 39.548 40.126 0 0 0 NaN 29.841 87 58 2 NaN NaN NaN NaN 0 NaN NaN 0 368600 36838 4278 23314 23325 0.05308572300475589 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1 ENST00000566833.1_1_15:43477651-43481519:+|nuORF ENST00000566833.1_1_15:43477651-43481519:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 486.777274 971.539994 -0.14928 -7.2664E-05 -0.045336 -2.2068E-05 -0.19461 -9.4733E-05 486.77719244511843 35.367 1.059 38.792 38.47 39.529 3.4253 -0.01874 -0.0001025 NaN 49.554 162 70 3 NaN NaN NaN NaN 0 NaN NaN 0 633650 36839 4278 23314 23325 0.05308572300475589 RLNGPNRR 8 Unmodified _RLNGPNRR_ 0 0 0 ENST00000323853.9_1_2:96969024-96970521:-|nuORF ENST00000323853.9_1_2:96969024-96970521:-|nuORF ENST00000323853.9_1_2:96969024-96970521:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 491.7861022949219 2 491.786299 981.558044 -0.30623 -0.0001506 0.087869 4.3213E-05 -0.21836 -0.00010739 491.7864405909534 12.983 0.25683 12.983 12.899 13.156 0 47 24 3 0 0 0 0.82752 1 258 258 8.5933 1.304 1 133640 36840 6160 23315 23326 42032 42032 0.06652752065838285 RLNKKKKKKKQ 11 Unmodified _RLNKKKKKKKQ_ 0 0 0 REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense MSMS UPN47_class_I_Rep_2 3 476.3282165527344 3 476.327938 1425.96199 NaN NaN NaN NaN NaN NaN NaN 107.73 1 111.26 110.76 111.76 3.5345 0 0 0 0.38417 1 26072 26072 0 0 1 + 36841 30469 23316 23327 42033 42033 0.26604326384222077 RLNKKKKKKKQ 11 Unmodified _RLNKKKKKKKQ_ 0 0 0 REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense MSMS UPN47_class_I_Rep_2 3 476.3272399902344 3 476.327938 1425.96199 NaN NaN NaN NaN NaN NaN NaN 109.81 1 113.34 112.84 113.84 3.5307 0 0 0 0.38417 1 26752 26752 0.08335 0 1 + 36842 30469 23316 23327 42034 42034 0.26604326384222077 RLNKKKKKKKQ 11 Unmodified _RLNKKKKKKKQ_ 0 0 0 REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense MSMS UPN48_class_I_Rep_1 5 476.32696533203125 3 476.327938 1425.96199 NaN NaN NaN NaN NaN NaN NaN 108.51 1 112.14 111.64 112.64 3.6313 0 0 0 0.38417 1 26264 26264 0.45452 0.35968 1 + 36843 30469 23316 23327 42035 42035 0.26604326384222077 RLNKKKKKKKQ 11 Unmodified _RLNKKKKKKKQ_ 0 0 0 REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense REV__L1PB1_dup6676|chr8:96972055-96977981:+|4.508663328786815|0.2143147830692582|4.39|151.0|120|2|sense MSMS UPN48_class_I_Rep_3 7 476.3271484375 3 476.327938 1425.96199 NaN NaN NaN NaN NaN NaN NaN 109.14 1 112.82 112.32 113.32 3.6751 0 0 0 0.38417 1 25905 25905 0 0 1 + 36844 30469 23316 23327 42036 42036 0.26604326384222077 RLNNIVNR 8 Unmodified _RLNNIVNR_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS UPN46_class_I_Rep_3 1 499.796630859375 2 499.796332 997.578111 -0.0035578 -1.7782E-06 0.10546 5.2709E-05 0.1019 5.0931E-05 499.7961403374363 27.592 0.82537 27.592 27.235 28.06 0 99 64 2 0 0 0 0.82752 3 4056 4056;4091;4134 16.942 2.104 1 91897 36845 2063 23317 23328 42037;42038;42039 42037 0.07922503005806902 RLNPRTFR 8 Unmodified _RLNPRTFR_ 0 0 0 ENSG00000114573.10,ATP6V1A,chr3,+,I2.1,113779169,113780731|55|7.29|1|intron ENSG00000114573.10,ATP6V1A,chr3,+,I2.1,113779169,113780731|55|7.29|1|intron ENSG00000114573.10,ATP6V1A,chr3,+,I2.1,113779169,113780731|55|7.29|1|intron MSMS UPN48_class_I_Rep_2 6 530.3125 2 530.312149 1058.60975 NaN NaN NaN NaN NaN NaN NaN 28.492 1 32.123 31.623 32.623 3.6311 0 0 0 0.40746 1 3926 3926 0.69038 0 1 36846 2082 23318 23329 42040 42040 0.0827849575973687 RLNRVVLE 8 Unmodified _RLNRVVLE_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-5|OBSCN REV__nc|ENSG00000154358|Q5VST9-5|OBSCN MULTI-SECPEP UPN48_class_I_Rep_3 7 500.3701171875 2 499.808908 997.603263 0.25846 0.00012918 -0.24432 -0.00012211 0.014148 7.0712E-06 499.8088938086062 107.6 0.11887 111.28 111.23 111.35 3.6813 24 16 2 0 0 0 0.72333 1 25378 25378 8.5933 0 1 3188800 + 36847 19737 23319 23330 42041 42041 0.10436557808361613 RLNSIQLYI 9 Unmodified _RLNSIQLYI_ 0 0 0 L1MA9_dup11016|chr10:92003203-92004257:-|1.7149340500939012|0.1554525306832169|3.46|151.0|52|1|anti-sense L1MA9_dup11016|chr10:92003203-92004257:-|1.7149340500939012|0.1554525306832169|3.46|151.0|52|1|anti-sense L1MA9_dup11016|chr10:92003203-92004257:-|1.7149340500939012|0.1554525306832169|3.46|151.0|52|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3289794921875 2 560.329673 1118.64479 0.51698 0.00028968 -1.285 -0.00072002 -0.76802 -0.00043035 560.3285203832203 53.938 0.65622 57.257 56.972 57.628 3.3187 64 40 2 0 0 0 0.46434 1 12232 12232 4.3292 0 1 97130 36848 10082 23320 23331 42042 42042 0.09021693777026485 RLNVDEAF 8 Unmodified _RLNVDEAF_ 0 0 0 ENSG00000126458|ENST00000246792|RRAS ENSG00000126458|ENST00000246792|RRAS ENSG00000126458|ENST00000246792|RRAS MSMS UPN47_class_I_Rep_1 2 482.5816650390625 2 482.248349 962.482145 NaN NaN NaN NaN NaN NaN NaN 20.059 1 23.671 23.171 24.171 3.6118 0 0 0 0.40746 1 1949 1949 0.69038 0 1 36849 2536 23321 23332 42043 42043 -0.0005968962495899177 RLPEAIEEV 9 Unmodified _RLPEAIEEV_ 0 0 0 ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.2904052734375 2 528.290214 1054.56587 0.14514 7.6675E-05 -0.43136 -0.00022788 -0.28622 -0.00015121 528.2900226416893 48.359 0.73491 52.041 51.775 52.51 3.6819 71 43 2 0 0 0 0.19147 2 10428 10428;10471 21.537 0 1 150990 36850 6466 23322 23333 42044;42045 42044 0.04077421752072041 RLPEAIEEV 9 Unmodified _RLPEAIEEV_ 0 0 0 ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 528.2896728515625 2 528.290214 1054.56587 0.11316 5.9781E-05 -0.33353 -0.0001762 -0.22037 -0.00011642 528.2899709453843 48.757 0.66226 52.103 51.836 52.498 3.3465 66 38 2 0 0 0 0.12096 2 10545 10545;10602 29.841 3.5724 1 153550 36851 6466 23322 23333 42046;42047 42046 0.04077421752072041 RLPEAIEEV 9 Unmodified _RLPEAIEEV_ 0 0 0 ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENST00000377824.8_1_9:37422741-37431094:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.2899169921875 2 528.290214 1054.56587 0.35145 0.00018567 -0.52786 -0.00027886 -0.17641 -9.3196E-05 528.2899220401905 48.883 0.72511 52.118 51.784 52.509 3.2345 71 41 2 0 0 0 0.22932 2 10696 10653;10696 18.373 3.1246 1 137270 36852 6466 23322 23333 42048;42049 42049 0.04077421752072041 RLPETAIT 8 Unmodified _RLPETAIT_ 0 0 0 REV__nc|ENSG00000138613|Q8WW43-2|APH1B REV__nc|ENSG00000138613|Q8WW43-2|APH1B MSMS UPN47_class_I_Rep_2 3 450.76123046875 2 450.761092 899.507631 NaN NaN NaN NaN NaN NaN NaN 115.47 1 118.98 118.48 119.48 3.5039 0 0 0 0.40746 1 28152 28152 0.69038 0 1 + 36853 19280 23323 23334 42050 42050 0.05385784897441681 RLPFKMAI 8 Unmodified _RLPFKMAI_ 0 0 0 REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|179|1|anti-sense REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|179|1|anti-sense MSMS UPN48_class_I_Rep_1 5 488.2791748046875 2 488.294048 974.573543 NaN NaN NaN NaN NaN NaN NaN 57.452 1 60.946 60.446 61.446 3.4942 0 0 0 0.40364 1 12450 12450 5.7604 0.52976 1 + 36854 24755 23324 23335 42051 42051 0.08523902538661332 RLPHWRRRGRR 11 Unmodified _RLPHWRRRGRR_ 0 0 0 ENST00000250894.8_2_16:1818305-1818896:+|nuORF ENST00000250894.8_2_16:1818305-1818896:+|nuORF ENST00000250894.8_2_16:1818305-1818896:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 516.3132934570312 3 515.978526 1544.91375 0.34456 0.00017779 -0.27644 -0.00014264 0.068117 3.5147E-05 516.312999091063 102.7 0.21319 106.41 106.36 106.58 3.7108 52 31 2 0 0 0 0.68583 1 24345 24345 0 0 1 188090 36855 5916 23325 23336 42052 42052 0.16308690307550933 RLPKLKHV 8 Unmodified _RLPKLKHV_ 0 0 0 nc|ENSG00000114631|Q9NZ53-2|PODXL2;ENSG00000114631|ENST00000342480|PODXL2 nc|ENSG00000114631|Q9NZ53-2|PODXL2 nc|ENSG00000114631|Q9NZ53-2|PODXL2 MSMS UPN48_class_I_Rep_2 6 495.8334655761719 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 40.651 1 44.392 43.892 44.892 3.7413 0 0 0 0.40746 1 7340 7340 0.69038 0 1 36856 2084 23326 23337 42053 42053 0.15458042430316254 RLPLARKRK 9 Unmodified _RLPLARKRK_ 0 0 0 L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|240|1|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|240|1|anti-sense L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|240|1|anti-sense MSMS UPN47_class_I_Rep_2 3 569.7822875976562 2 569.388191 1136.76183 NaN NaN NaN NaN NaN NaN NaN 67.944 1 71.214 70.714 71.714 3.2696 0 0 0 0.4007 1 16413 16413 0.52476 0 1 36857 14594 23327 23338 42054 42054 0.19891896507306228 RLPLIFCP 8 Unmodified _RLPLIFCP_ 0 0 0 ENST00000543897.5_2_12:122973991-122975064:-|nuORF ENST00000543897.5_2_12:122973991-122975064:-|nuORF ENST00000543897.5_2_12:122973991-122975064:-|nuORF MSMS UPN46_class_I_Rep_3 1 479.7783203125 2 479.780773 957.546994 NaN NaN NaN NaN NaN NaN NaN 80.863 1 80.863 80.363 81.363 0 0 0 0 0.40738 1 19070 19070 0.79363 0 1 36858 7365 23328 23339 42055 42055 0.06652213647328153 RLPLKNHNK 9 Unmodified _RLPLKNHNK_ 0 0 0 REV__L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|145|3|sense REV__L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|145|3|sense MSMS UPN48_class_I_Rep_3 7 560.3406982421875 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 81.393 1 85.078 84.578 85.578 3.685 0 0 0 0.39518 1 19267 19267 1.8442 0 1 + 36859 30175 23329 23340 42056 42056 0.11267337965296065 RLPLKPHVKK 10 Unmodified _RLPLKPHVKK_ 0 0 0 ENST00000561481.1_1_16:74496494-74496551:-|nuORF ENST00000561481.1_1_16:74496494-74496551:-|nuORF ENST00000561481.1_1_16:74496494-74496551:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 405.3010559082031 3 405.939792 1214.79755 0.082132 3.3341E-05 -1.0638 -0.00043182 -0.98162 -0.00039848 405.9393323857902 108.09 0.071266 111.76 111.72 111.79 3.6746 10 6 2 0 0 0 0.84575 1 25601 25601 0.69767 0 1 840330 36860 7459 23330 23341 42057 42057 0.19873933964299795 RLPLKPHVKK 10 Unmodified _RLPLKPHVKK_ 0 0 0 ENST00000561481.1_1_16:74496494-74496551:-|nuORF ENST00000561481.1_1_16:74496494-74496551:-|nuORF ENST00000561481.1_1_16:74496494-74496551:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 405.939792 1214.79755 0.096573 3.9203E-05 -2.45 -0.00099456 -2.3534 -0.00095536 405.93894742307185 107.95 0.025879 111.63 111.61 111.64 3.6813 -0.065917 -0.0013735 NaN 0.69767 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 490250 36861 7459 23330 23341 0.19873933964299795 RLPLLAGC 8 Unmodified _RLPLLAGC_ 0 0 0 ENST00000355951.2_1_7:143573664-143599206:-|nuORF;ENST00000479870.5_1_7:143599074-143599233:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF MSMS UPN46_class_I_Rep_3 1 421.75146484375 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 71.487 1 71.487 70.987 71.987 0 0 0 0 0.40738 1 16471 16471 0.79363 0 1 36862 6284 23331 23342 42058 42058 0.05731067579142746 RLPLLAGC 8 Unmodified _RLPLLAGC_ 0 0 0 ENST00000355951.2_1_7:143573664-143599206:-|nuORF;ENST00000479870.5_1_7:143599074-143599233:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF MSMS UPN46_class_I_Rep_3 1 421.7513732910156 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 71.65 1 71.65 71.15 72.15 0 0 0 0 0.40738 1 16518 16518 0.79363 0 1 36863 6284 23331 23342 42059 42059 0.05731067579142746 RLPLLAGC 8 Unmodified _RLPLLAGC_ 0 0 0 ENST00000355951.2_1_7:143573664-143599206:-|nuORF;ENST00000479870.5_1_7:143599074-143599233:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF MSMS UPN47_class_I_Rep_1 2 421.7516174316406 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 68.294 1 71.658 71.158 72.158 3.3646 0 0 0 0.40738 1 16477 16477 0.79363 0 1 36864 6284 23331 23342 42060 42060 0.05731067579142746 RLPLLAGC 8 Unmodified _RLPLLAGC_ 0 0 0 ENST00000355951.2_1_7:143573664-143599206:-|nuORF;ENST00000479870.5_1_7:143599074-143599233:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF ENST00000355951.2_1_7:143573664-143599206:-|nuORF MSMS UPN47_class_I_Rep_1 2 421.7511291503906 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 68.443 1 71.808 71.308 72.308 3.3646 0 0 0 0.40738 1 16523 16523 0.79363 0 1 36865 6284 23331 23342 42061 42061 0.05731067579142746 RLPLREIR 8 Unmodified _RLPLREIR_ 0 0 0 REV__ENST00000266984.9_2_12:49312130-49312193:+|nuORF REV__ENST00000266984.9_2_12:49312130-49312193:+|nuORF MSMS UPN47_class_I_Rep_3 4 526.8216552734375 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 115 1 118.48 117.98 118.98 3.4802 0 0 0 0.40746 1 28261 28261 0.69038 0 1 + 36866 21599 23332 23343 42062 42062 0.13768239453634123 RLPMCYVL 8 Unmodified _RLPMCYVL_ 0 0 0 REV__L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|71|2|anti-sense REV__L1PA16_dup13828|chr22:23701296-23702784:+|1.6827978071690304|0.4045027871460782|2.06|151.0|71|2|anti-sense MSMS UPN48_class_I_Rep_2 6 497.7636413574219 2 497.764266 993.513979 NaN NaN NaN NaN NaN NaN NaN 114.62 1 118.28 117.78 118.78 3.6616 0 0 0 0.40738 1 27404 27404 0.79363 0 1 + 36867 29357 23333 23344 42063 42063 0.016962635329718978 RLPPLWIFV 9 Unmodified _RLPPLWIFV_ 0 0 0 HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|162|1|anti-sense HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|162|1|anti-sense HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|162|1|anti-sense MSMS UPN46_class_I_Rep_3 1 570.8480834960938 2 570.850045 1139.68554 NaN NaN NaN NaN NaN NaN NaN 26.34 1 26.34 25.84 26.84 0 0 0 0 0.40038 1 3751 3751 0.6015 0 1 36868 8103 23334 23345 42064 42064 0.12128079887293097 RLPPPFPGL 9 Unmodified _RLPPPFPGL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2975158691406 2 497.297645 992.580737 0.15146 7.5319E-05 0.061874 3.077E-05 0.21333 0.00010609 497.2974998812254 64.382 0.47791 67.738 67.334 67.812 3.3557 88 45 2 0 0 0 0.33654 1 15299 15299 11.64 3.047 1 186450 36869 830 23335 23346 42065 42065 0.08414958410764939 RLPPPFPGL 9 Unmodified _RLPPPFPGL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.297607421875 2 497.297645 992.580737 0.14781 7.3504E-05 -0.0061068 -3.0369E-06 0.1417 7.0467E-05 497.2975495898598 64.569 0.6013 67.924 67.812 68.413 3.3557 100 52 3 0 0 0 0.32219 2 15448 15371;15448 12.532 3.9383 1 220540 36870 830 23335 23346 42066;42067 42067 0.08414958410764939 RLPPPFPGL 9 Unmodified _RLPPPFPGL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS UPN47_class_I_Rep_2 3 497.297607421875 2 497.297645 992.580737 0.18629 9.264E-05 -0.15726 -7.8204E-05 0.029028 1.4436E-05 497.297501287867 64.695 1.7443 67.951 67.398 69.142 3.2556 186 127 2 0 0 0 0.25207 3 15364 15364;15486;15576 16.942 8.349 1 261150 36871 830 23335 23346 42068;42069;42070 42068 0.08414958410764939 RLPPPFPGL 9 Unmodified _RLPPPFPGL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MSMS UPN47_class_I_Rep_3 4 497.29779052734375 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 64.859 1 68.038 67.538 68.538 3.1795 0 0 0 0.28335 1 15540 15540 11.64 2.2572 1 36872 830 23335 23346 42071 42071 0.08414958410764939 RLPQLLRRE 9 Unmodified _RLPQLLRRE_ 0 0 0 ENST00000425203.1_1_22:31644491-31644569:+|nuORF ENST00000425203.1_1_22:31644491-31644569:+|nuORF ENST00000425203.1_1_22:31644491-31644569:+|nuORF MSMS UPN47_class_I_Rep_2 3 590.8662109375 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 98.523 1 102.01 101.51 102.51 3.4897 0 0 0 0.40098 1 24157 24157 0.45834 0 1 36873 6700 23336 23347 42072 42072 0.13735296028107769 RLPQPRLM 8 Unmodified _RLPQPRLM_ 0 0 0 MLT1K_dup2706|chr3:11454222-11454693:+|1.8674592738427709|0.0176009213790795|6.73|151.0|29|3|anti-sense MLT1K_dup2706|chr3:11454222-11454693:+|1.8674592738427709|0.0176009213790795|6.73|151.0|29|3|anti-sense MLT1K_dup2706|chr3:11454222-11454693:+|1.8674592738427709|0.0176009213790795|6.73|151.0|29|3|anti-sense MSMS UPN46_class_I_Rep_3 1 505.8013916015625 2 505.800029 1009.5855 NaN NaN NaN NaN NaN NaN NaN 14.806 1 14.806 14.306 15.306 0 0 0 0 0.40625 1 724 724 2.3027 0.24298 1 36874 16480 23337 23348 42073 42073 0.0810951928186796 RLPRLVRLVR 10 Unmodified _RLPRLVRLVR_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S;REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__ENSG00000081248|ENST00000362061|CACNA1S MSMS UPN47_class_I_Rep_2 3 639.4332885742188 2 639.435673 1276.85679 NaN NaN NaN NaN NaN NaN NaN 108.49 1 112.02 111.52 112.52 3.5333 0 0 0 0.53105 1 26321 26321 0.40072 0 1 + 36875 17913;18184 23338 23349 42074 42074 0.2294382997847606 RLPSETYFF 9 Unmodified _RLPSETYFF_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MULTI-MSMS UPN48_class_I_Rep_1 5 580.2939453125 2 580.292756 1158.57096 0.54059 0.0003137 0.11247 6.5263E-05 0.65305 0.00037896 580.2928185534843 63.11 0.70647 66.572 66.193 66.899 3.4625 83 47 2 0 0 0 0.31407 2 14128 14128;14168 13.042 2.9685 1 175450 36876 5769 23339 23350 42075;42076 42075 -0.001982743853204738 RLPSETYFF 9 Unmodified _RLPSETYFF_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MULTI-MSMS UPN48_class_I_Rep_2 6 580.2938232421875 2 580.292756 1158.57096 0.52562 0.00030501 0.17989 0.00010439 0.70551 0.0004094 580.2930212589845 62.986 0.73193 66.46 66.103 66.835 3.4738 90 54 2 0 0 0 0.37599 2 14185 14092;14185 9.3831 4.1525 1 202170 36877 5769 23339 23350 42077;42078 42078 -0.001982743853204738 RLPSETYFF 9 Unmodified _RLPSETYFF_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MULTI-MSMS UPN48_class_I_Rep_3 7 580.7944946289062 2 580.292756 1158.57096 0.50163 0.00029109 0.61662 0.00035782 1.1182 0.00064891 580.2932977106373 62.874 0.70782 66.383 65.959 66.667 3.5091 87 48 2 0 0 0 0.36392 1 13988 13988 10.074 3.3508 1 207910 36878 5769 23339 23350 42079 42079 -0.001982743853204738 RLPVLVKLII 10 Unmodified _RLPVLVKLII_ 0 0 0 REV__Tigger1_dup10270|chr15:30767429-30768896:-|1.3518761325313164|0.1008880981105113|3.74|151.0|31|3|sense REV__Tigger1_dup10270|chr15:30767429-30768896:-|1.3518761325313164|0.1008880981105113|3.74|151.0|31|3|sense MSMS UPN46_class_I_Rep_3 1 582.4180297851562 2 582.415552 1162.81655 NaN NaN NaN NaN NaN NaN NaN 55.25 1 55.25 54.75 55.75 0 0 0 0 0.53105 1 12006 12006 0 0 1 + 36879 32324 23340 23351 42080 42080 0.24165470535376699 RLPYPLQMK 9 Unmodified _RLPYPLQMK_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MSMS UPN48_class_I_Rep_2 6 573.3294677734375 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 88.273 1 92.001 91.501 92.501 3.7279 0 0 0 0.39518 1 21017 21017 1.8442 0.36234 1 36880 2835 23341 23352 42081 42081 0.0761494176758788 RLPYPLQMK 9 Unmodified _RLPYPLQMK_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MULTI-MSMS UPN48_class_I_Rep_3 7 573.83203125 2 573.328619 1144.64269 0.4883 0.00027996 1.9498 0.0011179 2.4381 0.0013978 573.3296194600567 87.969 0.17194 91.779 91.697 91.869 3.8104 32 22 2 0 0 0 0.48846 1 20890 20890 1.8442 0.19162 1 113130 36881 2835 23341 23352 42082 42082 0.0761494176758788 RLPYPLQMK 9 Unmodified _RLPYPLQMK_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MSMS UPN48_class_I_Rep_3 7 573.3284301757812 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 88.15 1 91.961 91.461 92.461 3.8104 0 0 0 0.39518 1 20924 20924 1.8442 0.36234 1 36882 2835 23341 23352 42083 42083 0.0761494176758788 RLPYPLQMK 9 Unmodified _RLPYPLQMK_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 573.328619 1144.64269 0.41017 0.00023516 1.8983 0.0010883 2.3085 0.0013235 573.3296223329116 88.136 0.54503 91.759 91.507 92.052 3.6229 0.094251 -3.8021E-05 NaN 1.8442 91 61 2 NaN NaN NaN NaN 0 NaN NaN 0 170910 36883 2835 23341 23352 0.0761494176758788 RLPYPLQMK 9 Unmodified _RLPYPLQMK_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MULTI-MATCH UPN48_class_I_Rep_2 6 2 573.328619 1144.64269 0.48148 0.00027605 2.3109 0.0013249 2.7924 0.0016009 573.3296155569058 87.728 0.06694 91.456 91.42 91.487 3.7279 -0.20887 0.00043509 NaN 1.8442 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 40133 36884 2835 23341 23352 0.0761494176758788 RLQAPVRRQ 9 Unmodified _RLQAPVRRQ_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MSMS UPN46_class_I_Rep_3 1 562.3436889648438 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 88.12 1 88.12 87.62 88.62 0 0 0 0 0.4007 1 21147 21147 0.52476 0 1 36885 1681 23342 23353 42084 42084 0.11697856196815337 RLQATRLI 8 Unmodified _RLQATRLI_ 0 0 0 L1MC1_dup9223|chr11:68484934-68485689:-|1.827685505890402|0.0191644007229577|6.58|151.0|6|1|sense L1MC1_dup9223|chr11:68484934-68485689:-|1.827685505890402|0.0191644007229577|6.58|151.0|6|1|sense L1MC1_dup9223|chr11:68484934-68485689:-|1.827685505890402|0.0191644007229577|6.58|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 485.8114013671875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.164 1 71.529 71.029 72.029 3.3646 0 0 0 0.40738 1 16437 16437 0.79363 0 1 36886 11212 23343 23354 42085 42085 0.12232861670975126 RLQDAIAKV 9 Unmodified _RLQDAIAKV_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MSMS UPN47_class_I_Rep_3 4 507.3085021972656 2 507.308741 1012.60293 -0.27803 -0.00014105 -0.12834 -6.5107E-05 -0.40637 -0.00020615 507.3087029756539 36.276 0.8464 39.53 39.228 40.074 3.2547 69 54 2 0 0 0 0.39745 1 6819 6819 8.1555 0 1 102650 36887 1463 23344 23355 42086 42086 0.09713138088511641 RLQDAIAKV 9 Unmodified _RLQDAIAKV_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MATCH UPN47_class_I_Rep_1 2 2 507.308741 1012.60293 -0.20552 -0.00010426 0.064845 3.2897E-05 -0.14068 -7.1366E-05 507.3087661826541 35.715 0.92699 39.391 39.155 40.082 3.6762 -0.088079 6.7812E-05 NaN 8.1555 88 64 2 NaN NaN NaN NaN 0 NaN NaN 0 70374 36888 1463 23344 23355 0.09713138088511641 RLQDAIAKV 9 Unmodified _RLQDAIAKV_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MATCH UPN47_class_I_Rep_2 3 2 507.308741 1012.60293 -0.23826 -0.00012087 0.01544 7.8328E-06 -0.22282 -0.00011304 507.30865211778564 36.105 0.73857 39.517 39.196 39.935 3.4114 0.037335 1.7684E-05 NaN 8.1555 80 54 2 NaN NaN NaN NaN 0 NaN NaN 0 69567 36889 1463 23344 23355 0.09713138088511641 RLQDAIAKV 9 Unmodified _RLQDAIAKV_ 0 0 0 nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L nc|ENSG00000100014|Q69YQ0-2|SPECC1L MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 507.308741 1012.60293 -0.27803 -0.00014105 -0.12834 -6.5107E-05 -0.40637 -0.00020615 507.3087029756539 36.276 0.8464 39.53 39.228 40.074 3.2547 0.050744 -0.0001282 NaN 8.1555 69 54 2 NaN NaN NaN NaN 0 NaN NaN 0 102650 36890 1463 23344 23355 0.09713138088511641 RLQEALNLF 9 Unmodified _RLQEALNLF_ 0 0 0 ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000476196.5_1_20:57478538-57485881:+|nuORF ENST00000476196.5_1_20:57478538-57485881:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 552.3139038085938 2 552.314023 1102.61349 0.36082 0.00019929 -0.07128 -3.9369E-05 0.28954 0.00015992 552.8154234540909 69.642 0.29676 69.642 69.501 69.798 0 54 30 3 0 0 0 0.39745 1 15957 15957 8.1555 1.4324 1 167560 36891 1302 23345 23356 42087 42087 0.06629120742923078 RLQEDPPAGV 10 Unmodified _RLQEDPPAGV_ 0 0 0 nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A nc|ENSG00000077721|P49459-2|UBE2A nc|ENSG00000077721|P49459-2|UBE2A MSMS UPN46_class_I_Rep_3 1 541.284912109375 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 37.749 1 37.749 37.249 38.249 0 0 0 0 0.53105 1 7130 7130 7.1017 2.7725 1 36892 1177 23346 23357 42088 42088 0.01931653466544958 RLQEDPPVGV 10 Unmodified _RLQEDPPVGV_ 0 0 0 ENST00000511807.1_1_5:133707262-133710155:+|nuORF;ENSG00000119048|ENST00000265339|UBE2B ENST00000511807.1_1_5:133707262-133710155:+|nuORF ENST00000511807.1_1_5:133707262-133710155:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.3014526367188 2 555.301113 1108.58767 NaN NaN NaN NaN NaN NaN NaN 44.443 1 44.443 43.943 44.943 0 0 0 0 0.53105 1 8959 8959 9.3831 4.0862 1 36893 2270 23347 23358 42089 42089 0.037722265006550515 RLQEEINEV 9 Unmodified _RLQEEINEV_ 0 0 0 nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP MSMS UPN46_class_I_Rep_3 1 565.2968139648438 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 42.188 1 42.188 41.688 42.688 0 0 0 0 0.098423 1 8333 8333 24.991 3.454 1 36894 16740 23348 23359 42090 42090 0.018356187754079656 RLQEEINEV 9 Unmodified _RLQEEINEV_ 0 0 0 nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP MSMS UPN46_class_I_Rep_3 1 565.295654296875 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 42.317 1 42.317 41.817 42.817 0 0 0 0 0.35904 1 8367 8367 7.609 2.3121 1 36895 16740 23348 23359 42091 42091 0.018356187754079656 RLQEEINEV 9 Unmodified _RLQEEINEV_ 0 0 0 nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP MSMS UPN46_class_I_Rep_3 1 565.2158203125 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 42.326 1 42.326 41.826 42.826 0 0 0 0 0.31132 1 8370 8370 10.151 2.5416 1 36896 16740 23348 23359 42092 42092 0.018356187754079656 RLQEEINEV 9 Unmodified _RLQEEINEV_ 0 0 0 nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP MSMS UPN47_class_I_Rep_1 2 565.2957763671875 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 37.694 1 41.359 40.859 41.859 3.6652 0 0 0 0.3824 1 7182 7182 4.897 0 1 36897 16740 23348 23359 42093 42093 0.018356187754079656 RLQEEINEV 9 Unmodified _RLQEEINEV_ 0 0 0 nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP MSMS UPN47_class_I_Rep_1 2 565.2959594726562 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 37.845 1 41.51 41.01 42.01 3.6652 0 0 0 0.33337 1 7229 7229 8.9762 1.3673 1 36898 16740 23348 23359 42094 42094 0.018356187754079656 RLQEEINEV 9 Unmodified _RLQEEINEV_ 0 0 0 nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP nc|ENSG00000166130|Q70UQ0-2|IKBIP MSMS UPN47_class_I_Rep_3 4 565.2948608398438 2 565.296027 1128.5775 NaN NaN NaN NaN NaN NaN NaN 38.154 1 41.395 40.895 41.895 3.2414 0 0 0 0.38073 1 7395 7395 5.2969 0 1 36899 16740 23348 23359 42095 42095 0.018356187754079656 RLQEELEKL 9 Unmodified _RLQEELEKL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 579.3299560546875 2 579.32987 1156.64519 -0.0018878 -1.0937E-06 -0.041448 -2.4012E-05 -0.043335 -2.5105E-05 579.3296855903882 41.759 0.91343 45.438 45.182 46.095 3.6792 86 64 2 0 0 0 0.40701 1 8450 8450 7.609 0 1 81429 36900 2518 23349 23360 42096 42096 0.07313068706230297 RLQEFIDEV 9 Unmodified _RLQEFIDEV_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MSMS UPN47_class_I_Rep_1 2 574.8013305664062 2 574.800946 1147.58734 NaN NaN NaN NaN NaN NaN NaN 56.465 1 59.923 59.423 60.423 3.4572 0 0 0 0.16861 1 12898 12898 18.373 3.1246 1 36901 5829 23350 23361 42097 42097 0.019448067807843472 RLQEFIDEV 9 Unmodified _RLQEFIDEV_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MSMS UPN47_class_I_Rep_1 2 574.8013305664062 2 574.800946 1147.58734 NaN NaN NaN NaN NaN NaN NaN 56.633 1 60.09 59.59 60.59 3.4572 0 0 0 0.38073 1 12950 12950 5.2969 2.0156 1 36902 5829 23350 23361 42098 42098 0.019448067807843472 RLQEFIDEV 9 Unmodified _RLQEFIDEV_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MSMS UPN47_class_I_Rep_2 3 574.80078125 2 574.800946 1147.58734 NaN NaN NaN NaN NaN NaN NaN 56.888 1 60.189 59.689 60.689 3.3009 0 0 0 0.38073 1 13057 13057 5.2969 0 1 36903 5829 23350 23361 42099 42099 0.019448067807843472 RLQEFIDEV 9 Unmodified _RLQEFIDEV_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MSMS UPN47_class_I_Rep_3 4 574.8015747070312 2 574.800946 1147.58734 NaN NaN NaN NaN NaN NaN NaN 56.835 1 60.007 59.507 60.507 3.1721 0 0 0 0.35904 1 13095 13095 7.609 0 1 36904 5829 23350 23361 42100 42100 0.019448067807843472 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.63397216796875 3 510.63325 1528.87792 0.31902 0.0001629 1.9496 0.00099555 2.2687 0.0011584 510.9687713955957 100.58 0.14806 100.58 100.46 100.6 0 22 16 2 0 0 0 0.68024 2 24502 24502;24523 0.50596 0 1 310890 36905 519 23351 23362 42101;42102 42101 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.634033203125 3 510.63325 1528.87792 0.31927 0.00016303 1.6946 0.00086531 2.0139 0.0010283 510.6338543252798 101.09 0.075623 101.09 101.04 101.12 0 16 6 4 0 0 0 0.68024 1 24664 24664 0.50596 0 1 1511300 36906 519 23351 23362 42103 42103 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.6341857910156 3 510.63325 1528.87792 0.31895 0.00016286 1.9238 0.00098236 2.2428 0.0011452 510.6342155361962 101.49 0.088768 101.49 101.43 101.52 0 13 10 2 0 0 0 0.68024 1 24751 24751 0.50596 0.50596 1 155920 36907 519 23351 23362 42104 42104 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN46_class_I_Rep_3 1 510.6343078613281 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 101.4 1 101.4 100.9 101.9 0 0 0 0 0.38417 1 24739 24739 0.50596 0 1 36908 519 23351 23362 42105 42105 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN46_class_I_Rep_3 1 510.96929931640625 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 102.04 1 102.04 101.54 102.54 0 0 0 0 0.38417 1 24898 24898 0.094841 0 1 36909 519 23351 23362 42106 42106 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN47_class_I_Rep_2 3 510.6332092285156 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 97.353 1 100.84 100.34 101.34 3.4836 0 0 0 0.38417 1 23901 23901 0.50596 0 1 36910 519 23351 23362 42107 42107 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN47_class_I_Rep_2 3 510.6346435546875 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 97.407 1 100.89 100.39 101.39 3.4836 0 0 0 0.38417 1 23914 23914 0.50596 0 1 36911 519 23351 23362 42108 42108 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN47_class_I_Rep_2 3 510.63385009765625 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 97.542 1 101.03 100.53 101.53 3.4836 0 0 0 0.38417 1 23941 23941 0.50596 0 1 36912 519 23351 23362 42109 42109 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN47_class_I_Rep_3 4 510.634033203125 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 97.818 1 101.24 100.74 101.74 3.4216 0 0 0 0.38417 1 24235 24235 0.50596 0 1 36913 519 23351 23362 42110 42110 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MSMS UPN48_class_I_Rep_1 5 510.6347961425781 3 510.63325 1528.87792 NaN NaN NaN NaN NaN NaN NaN 96.632 1 100.24 99.744 100.74 3.6124 0 0 0 0.38417 1 23287 23287 0.50596 0 1 36914 519 23351 23362 42111 42111 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 510.63325 1528.87792 0.32321 0.00016504 1.6538 0.00084449 1.977 0.0010095 510.96837469467016 96.928 0.11604 100.41 100.35 100.47 3.4791 -0.084826 -0.00010247 NaN 0.50596 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 152650 36915 519 23351 23362 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 510.63325 1528.87792 0.32257 0.00016471 2.0505 0.0010471 2.3731 0.0012118 510.6340785298911 97.694 0.35822 101.18 100.98 101.34 3.4836 0.1389 0.00016899 NaN 0.50596 96 50 3 NaN NaN NaN NaN 0 NaN NaN 0 125150 36916 519 23351 23362 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 510.63325 1528.87792 0.32659 0.00016677 1.8149 0.00092677 2.1415 0.0010935 510.6340547242711 98.134 0.21796 101.56 101.42 101.64 3.4216 0.055349 -0.00013525 NaN 0.50596 43 29 2 NaN NaN NaN NaN 0 NaN NaN 0 121630 36917 519 23351 23362 0.13463795287339053 RLQFKRWHVFL 11 Unmodified _RLQFKRWHVFL_ 0 0 0 Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense Charlie3_dup6|chr1:180644679-180647279:-|1.2134082084439564|0.0213635408655972|5.83|151.0|63|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 510.63325 1528.87792 0.31979 0.0001633 1.818 0.00092834 2.1378 0.0010916 510.9685056883177 97.145 0.87234 100.92 100.83 101.7 3.779 -0.11478 -0.0001872 NaN 0.50596 185 121 2 NaN NaN NaN NaN 0 NaN NaN 0 453300 36918 519 23351 23362 0.13463795287339053 RLQHQRLVG 9 Unmodified _RLQHQRLVG_ 0 0 0 REV__ENST00000319836.7_1_10:45956824-45959774:-|nuORF REV__ENST00000319836.7_1_10:45956824-45959774:-|nuORF MSMS UPN47_class_I_Rep_1 2 553.8297729492188 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 79.656 1 83.121 82.621 83.621 3.465 0 0 0 0.4007 1 19854 19854 0.52476 0 1 + 36919 21730 23352 23363 42112 42112 0.09826167305504896 RLQKKKKKKK 10 Unmodified _RLQKKKKKKK_ 0 0 0 AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|13|3|sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|42|1|sense MSMS UPN48_class_I_Rep_3 7 438.31365966796875 3 438.313629 1311.91906 NaN NaN NaN NaN NaN NaN NaN 78.635 1 82.257 81.757 82.757 3.6216 0 0 0 0.53105 1 18618 18618 0.15932 0 1 36920 30419 23353 23364 42113 42113 0.27557556326814847 RLQLTTAA 8 Unmodified _RLQLTTAA_ 0 0 0 nc|ENSG00000075399|Q9Y2B5-2|VPS9D1 nc|ENSG00000075399|Q9Y2B5-2|VPS9D1 nc|ENSG00000075399|Q9Y2B5-2|VPS9D1 MULTI-SECPEP UPN47_class_I_Rep_1 2 436.878173828125 2 437.261259 872.507966 -0.45354 -0.00019832 -0.65752 -0.00028751 -1.1111 -0.00048583 437.26084163845996 19.383 0.77488 22.995 22.654 23.429 3.6118 129 88 2 0 0 0 0.72333 1 1837 1837 0 0 1 51008 36921 16637 23354 23365 42114 42114 0.06661204617296335 RLQPGALAL 9 Unmodified _RLQPGALAL_ 0 0 0 REV__ENSG00000142599|ENST00000400908|RERE REV__ENSG00000142599|ENST00000400908|RERE MSMS UPN48_class_I_Rep_3 7 469.7711181640625 2 469.792727 937.5709 NaN NaN NaN NaN NaN NaN NaN 55.986 1 59.541 59.041 60.041 3.5554 0 0 0 0.39326 1 11921 11921 2.3027 0 1 + 36922 19409 23355 23366 42115 42115 0.0996177040534576 RLQPKAKA 8 Unmodified _RLQPKAKA_ 0 0 0 nc|ENSG00000161649|Q6UXG3-4|CD300LG;ENSG00000161649|ENST00000317310|CD300LG nc|ENSG00000161649|Q6UXG3-4|CD300LG nc|ENSG00000161649|Q6UXG3-4|CD300LG MULTI-MSMS UPN47_class_I_Rep_1 2 456.29248046875 2 456.292894 910.571235 -0.43489 -0.00019844 -0.47976 -0.00021891 -0.91465 -0.00041735 456.29251022309205 12.919 0.24464 16.369 16.301 16.546 3.45 33 18 2 0 0 0 0.82752 1 182 182 0.69038 0 1 88341 36923 3905 23356 23367 42116 42116 0.11237190125211782 RLQRGLKKFL 10 Unmodified _RLQRGLKKFL_ 0 0 0 REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF MSMS UPN48_class_I_Rep_2 6 629.881591796875 2 629.908956 1257.80336 NaN NaN NaN NaN NaN NaN NaN 41.515 1 45.266 44.766 45.766 3.7508 0 0 0 0.53105 1 7590 7590 0.40072 0 1 + 36924 22680 23357 23368 42117 42117 0.184770324759711 RLQRLDLPKQ 10 Unmodified _RLQRLDLPKQ_ 0 0 0 ENST00000511574.5_3_3:134204904-134225968:+|nuORF ENST00000511574.5_3_3:134204904-134225968:+|nuORF ENST00000511574.5_3_3:134204904-134225968:+|nuORF MSMS UPN48_class_I_Rep_1 5 422.92694091796875 3 422.926211 1265.7568 NaN NaN NaN NaN NaN NaN NaN 56.667 1 60.168 59.668 60.668 3.5014 0 0 0 0.53105 1 12213 12213 1.9064 0.31409 1 36925 7189 23358 23369 42118 42118 0.13455547854027827 RLQTHHLK 8 Unmodified _RLQTHHLK_ 0 0 0 LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense LTR12C_dup427|chr3:47887023-47888693:+|2.064822489947051|0.1477587134722509|3.8|151.0|43|3|sense MSMS UPN47_class_I_Rep_3 4 516.8062133789062 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 93.821 1 97.226 96.726 97.726 3.4052 0 0 0 0.40625 1 23374 23374 2.3027 0 1 36926 15551 23359 23370 42119 42119 0.08431093385456734 RLRADLELPR 10 Unmodified _RLRADLELPR_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MULTI-MSMS UPN46_class_I_Rep_3 1 619.8695068359375 2 619.870028 1237.7255 0.65601 0.00040664 -0.97218 -0.00060263 -0.31617 -0.00019598 619.8695837089741 88.458 0.11908 88.458 88.421 88.54 0 17 11 2 0 0 0 0.56333 1 21264 21264 1.4819 0.15237 1 137390 36927 4969 23360 23371 42120 42120 0.11614974819894996 RLRALAKD 8 Unmodified _RLRALAKD_ 0 0 0 REV__L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|9|1|sense REV__L1M1_dup8038|chr13:114091286-114092902:-|2.050204915889297|0.0424472874499456|5.59|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 471.7752990722656 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 18.527 1 21.882 21.382 22.382 3.3545 0 0 0 0.40746 1 1559 1559 0.69038 0 1 + 36928 24149 23361 23372 42121 42121 0.10392288636876401 RLRDAWRPR 9 Unmodified _RLRDAWRPR_ 0 0 0 REV__AluSz_dup77603|chr15:49891317-49891621:-|1.543134742254118|0.0219138954703089|6.14|151.0|2|1|sense REV__AluSz_dup77603|chr15:49891317-49891621:-|1.543134742254118|0.0219138954703089|6.14|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 613.3521728515625 2 613.35488 1224.69521 NaN NaN NaN NaN NaN NaN NaN 74.954 1 78.544 78.044 79.044 3.59 0 0 0 0.39518 1 17658 17658 1.8442 0 1 + 36929 17107 23362 23373 42122 42122 0.09184660945379619 RLREERRLRPL 11 Unmodified _RLREERRLRPL_ 0 0 0 REV__SVA_D_dup1235|chr17:39336994-39338549:+|2.02252923070285|0.0906312383880393|4.48|151.0|33|3|sense REV__SVA_D_dup1235|chr17:39336994-39338549:+|2.02252923070285|0.0906312383880393|4.48|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 498.64202880859375 3 498.642697 1492.90626 0.27527 0.00013726 -1.2704 -0.00063348 -0.99514 -0.00049622 498.64217527771785 56.822 0.18092 60.323 60.285 60.466 3.5007 15 13 2 0 0 0 0.68478 1 12277 12277 0.094841 0 1 139940 + 36930 32194 23363 23374 42123 42123 0.17952493196639807 RLRELTSI 8 Unmodified _RLRELTSI_ 0 0 0 ENSG00000085999|ENST00000371975|RAD54L ENSG00000085999|ENST00000371975|RAD54L ENSG00000085999|ENST00000371975|RAD54L MULTI-MSMS UPN47_class_I_Rep_2 3 494.30078125 2 494.300916 986.587279 0.40457 0.00019998 -0.05388 -2.6633E-05 0.35069 0.00017335 494.300823108099 88.339 1.09 91.786 91.345 92.435 3.4471 439 142 5 0 0 0 0.82752 1 21865 21865 0.69038 0 1 4870300 36931 1273 23364 23375 42124 42124 0.09344851571461277 RLRFRIYKGLP 11 Unmodified _RLRFRIYKGLP_ 0 0 0 L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|3|1|sense L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|3|1|sense L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 473.6310119628906 3 473.629617 1417.86702 NaN NaN NaN NaN NaN NaN NaN 61.046 1 64.525 64.025 65.025 3.4785 0 0 0 0.38417 1 13529 13529 0.50596 0.051438 1 36932 12640 23365 23376 42125 42125 0.17480392913080323 RLRFWLLIWL 10 Unmodified _RLRFWLLIWL_ 0 0 0 ENSG00000233232|ENST00000452313|NPIPB7;ENSG00000196436|ENST00000692376|NPIPB15 ENSG00000233232|ENST00000452313|NPIPB7 ENSG00000233232|ENST00000452313|NPIPB7 MSMS UPN47_class_I_Rep_3 4 472.62738037109375 3 472.627325 1414.86015 NaN NaN NaN NaN NaN NaN NaN 84.308 1 87.669 87.169 88.169 3.3615 0 0 0 0.53105 1 21158 21158 0.69767 0.24315 1 36933 5306 23366 23377 42126 42126 0.16931080032509271 RLRFWLLIWL 10 Unmodified _RLRFWLLIWL_ 0 0 0 ENSG00000233232|ENST00000452313|NPIPB7;ENSG00000196436|ENST00000692376|NPIPB15 ENSG00000233232|ENST00000452313|NPIPB7 ENSG00000233232|ENST00000452313|NPIPB7 MSMS UPN48_class_I_Rep_3 7 472.6268615722656 3 472.627325 1414.86015 NaN NaN NaN NaN NaN NaN NaN 84.188 1 87.917 87.417 88.417 3.7281 0 0 0 0.53105 1 19976 19976 1.7423 0.52744 1 36934 5306 23366 23377 42127 42127 0.16931080032509271 RLRGCRARLR 10 Unmodified _RLRGCRARLR_ 0 0 0 ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 628.8794555664062 2 628.883281 1255.75201 0.34569 0.0002174 -3.3367 -0.0020984 -2.991 -0.001881 629.3829797908578 25.778 0.058981 25.778 25.73 25.789 0 10 6 2 0 0 0 0.56078 1 3582 3582 3.2813 0.54611 1 117320 36935 6083 23367 23378 42128 42128 0.13436385230261294 RLRGCRARLR 10 Unmodified _RLRGCRARLR_ 0 0 0 ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.880615234375 2 628.883281 1255.75201 NaN NaN NaN NaN NaN NaN NaN 21.93 1 21.93 21.43 22.43 0 0 0 0 0.53105 1 2527 2527 3.2813 1.7994 1 36936 6083 23367 23378 42129 42129 0.13436385230261294 RLRGPWRR 8 Unmodified _RLRGPWRR_ 0 0 0 ENST00000394170.6_1_7:99102614-99102716:+|nuORF ENST00000394170.6_1_7:99102614-99102716:+|nuORF ENST00000394170.6_1_7:99102614-99102716:+|nuORF MSMS UPN46_class_I_Rep_3 1 548.8349609375 2 548.833583 1095.65261 NaN NaN NaN NaN NaN NaN NaN 31.628 1 31.628 31.128 32.128 0 0 0 0 0.40625 1 5310 5310 2.3027 0.65011 1 36937 6541 23368 23379 42130 42130 0.1086131060783373 RLRGVSVPF 9 Unmodified _RLRGVSVPF_ 0 0 0 ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENST00000503574.1_1_4:109543115-109543474:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 515.3101806640625 2 515.811451 1029.60835 0.16313 8.4146E-05 -0.12334 -6.3619E-05 0.039797 2.0528E-05 515.8114640968914 55.613 0.86946 58.923 58.651 59.52 3.3102 68 50 2 0 0 0 0.12444 1 12808 12808 2.0598 0 1 145950 36938 7140 23369 23380 42131 42131 0.09472861670974453 RLRHHHRL 8 Unmodified _RLRHHHRL_ 0 0 0 ENST00000465851.1_1_2:196545249-196581758:+|nuORF;ENSG00000196950.14,SLC39A10,chr2,+,I15.1,195728350,195734882|32|8.37|4|intron;ENSG00000196950|ENST00000359634|SLC39A10 ENST00000465851.1_1_2:196545249-196581758:+|nuORF ENST00000465851.1_1_2:196545249-196581758:+|nuORF MSMS UPN46_class_I_Rep_3 1 562.8364868164062 2 562.836657 1123.65876 NaN NaN NaN NaN NaN NaN NaN 38.955 1 38.955 38.455 39.455 0 0 0 0 0.40746 1 7454 7454 0.69038 0 1 36939 5340 23370 23381 42132 42132 0.10187828839343638 RLRHHHRL 8 Unmodified _RLRHHHRL_ 0 0 0 ENST00000465851.1_1_2:196545249-196581758:+|nuORF;ENSG00000196950.14,SLC39A10,chr2,+,I15.1,195728350,195734882|32|8.37|4|intron;ENSG00000196950|ENST00000359634|SLC39A10 ENST00000465851.1_1_2:196545249-196581758:+|nuORF ENST00000465851.1_1_2:196545249-196581758:+|nuORF MSMS UPN48_class_I_Rep_3 7 562.837158203125 2 562.836657 1123.65876 NaN NaN NaN NaN NaN NaN NaN 110.72 1 114.39 113.89 114.89 3.6654 0 0 0 0.40746 1 26272 26272 0.69038 0 1 36940 5340 23370 23381 42133 42133 0.10187828839343638 RLRHPSRVS 9 Unmodified _RLRHPSRVS_ 0 0 0 REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF MSMS UPN47_class_I_Rep_2 3 554.1756591796875 2 554.328331 1106.64211 NaN NaN NaN NaN NaN NaN NaN 27.101 1 30.6 30.1 31.1 3.4986 0 0 0 0.40098 1 4018 4018 0.45834 0 1 + 36941 22042 23371 23382 42134 42134 0.09305283162757405 RLRIQRQQQQ 10 Unmodified _RLRIQRQQQQ_ 0 0 0 REV__ENST00000498134.1_1_13:33528197-33528527:-|nuORF REV__ENST00000498134.1_1_13:33528197-33528527:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 451.9324951171875 3 451.932248 1352.77491 0.19008 8.5904E-05 0.72914 0.00032952 0.91922 0.00041542 451.93249241783536 107.03 0.38015 107.03 106.83 107.21 0 57 45 2 0 0 0 0.84575 1 26149 26149 0.77653 0.078866 1 302620 + 36942 22676 23372 23383 42135 42135 0.11263682828735 RLRKERFERRQ 11 Unmodified _RLRKERFERRQ_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-MSMS UPN48_class_I_Rep_1 5 525.3096313476562 3 525.309718 1572.90732 0.29382 0.00015435 0.49691 0.00026103 0.79073 0.00041538 525.6442871823739 98.922 0.31796 102.53 102.46 102.77 3.6065 79 40 3 0 0 0 0.68178 1 23881 23881 0.36667 0 1 692020 + 36943 18269 23373 23384 42136 42136 0.14378707565538207 RLRKERFERRQ 11 Unmodified _RLRKERFERRQ_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-MATCH UPN46_class_I_Rep_3 1 3 525.309718 1572.90732 0.33152 0.00017415 -0.16634 -8.738E-05 0.16518 8.6773E-05 525.309864871948 102.48 0.080063 102.48 102.45 102.53 0 -0.0084439 -0.00081586 NaN 0.36667 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 146670 + 36944 18269 23373 23384 0.14378707565538207 RLRKERFERRQ 11 Unmodified _RLRKERFERRQ_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-MATCH UPN47_class_I_Rep_3 4 3 525.309718 1572.90732 0.40988 0.00021532 0.098244 5.1608E-05 0.50813 0.00026692 525.3093100003609 99.036 0.054581 102.47 102.44 102.49 3.4328 -0.017749 -0.00039889 NaN 0.36667 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 158000 + 36945 18269 23373 23384 0.14378707565538207 RLRKERFERRQ 11 Unmodified _RLRKERFERRQ_ 0 0 0 REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP MULTI-MATCH UPN48_class_I_Rep_2 6 3 525.309718 1572.90732 0.39446 0.00020721 0.34702 0.00018229 0.74148 0.00038951 525.3095289135765 98.7 0.2037 102.47 102.39 102.6 3.7707 -0.015904 -6.8408E-06 NaN 0.36667 50 27 3 NaN NaN NaN NaN 0 NaN NaN 0 508930 + 36946 18269 23373 23384 0.14378707565538207 RLRKLDARTL 10 Unmodified _RLRKLDARTL_ 0 0 0 ENST00000424161.5_1_22:28315408-28390635:+|nuORF ENST00000424161.5_1_22:28315408-28390635:+|nuORF ENST00000424161.5_1_22:28315408-28390635:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 621.3925170898438 2 621.39367 1240.77279 0.66326 0.00041215 -1.6481 -0.0010241 -0.98488 -0.000612 621.3924305540436 100.76 0.090271 100.76 100.73 100.82 0 15 9 3 0 0 0 0.56486 1 24584 24584 0.40072 0 1 202050 36947 6695 23374 23385 42137 42137 0.16203254090919472 RLRKLDARTL 10 Unmodified _RLRKLDARTL_ 0 0 0 ENST00000424161.5_1_22:28315408-28390635:+|nuORF ENST00000424161.5_1_22:28315408-28390635:+|nuORF ENST00000424161.5_1_22:28315408-28390635:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 621.39367 1240.77279 0.42528 0.00026426 -0.90617 -0.00056309 -0.48089 -0.00029882 621.3931889309944 97.307 0.06546 100.92 100.9 100.96 3.6088 0.075613 0.00069774 NaN 0.40072 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 106380 36948 6695 23374 23385 0.16203254090919472 RLRKLKIA 8 Unmodified _RLRKLKIA_ 0 0 0 L1MEc_dup16570|chr17:46057949-46058245:+|1.0995328909396065|0.0101353693422062|6.76|151.0|2|1|sense L1MEc_dup16570|chr17:46057949-46058245:+|1.0995328909396065|0.0101353693422062|6.76|151.0|2|1|sense L1MEc_dup16570|chr17:46057949-46058245:+|1.0995328909396065|0.0101353693422062|6.76|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 499.3511047363281 2 499.353286 996.692019 NaN NaN NaN NaN NaN NaN NaN 24.03 1 27.799 27.299 28.299 3.769 0 0 0 0.40798 1 2725 2725 0 0 1 36949 13050 23375 23386 42138 42138 0.19354017838679738 RLRKLLSH 8 Unmodified _RLRKLLSH_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN46_class_I_Rep_3 1 511.832275390625 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 28.286 1 28.286 27.786 28.786 0 0 0 0 0.40746 1 4321 4321 0.69038 0 1 + 36950 18551 23376 23387 42139 42139 0.14092256799222014 RLRKLLSH 8 Unmodified _RLRKLLSH_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN46_class_I_Rep_3 1 511.831787109375 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 28.324 1 28.324 27.824 28.824 0 0 0 0 0.40746 1 4331 4331 0.69038 0 1 + 36951 18551 23376 23387 42140 42140 0.14092256799222014 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN46_class_I_Rep_3 1 478.9744567871094 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 46.633 1 46.633 46.133 47.133 0 0 0 0 0.38417 1 9575 9575 0.094841 0 1 + 36952 18551 23377 23388 42141 42141 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS UPN47_class_I_Rep_1 2 479.3089904785156 3 478.975788 1433.90553 -0.27437 -0.00013142 -1.8166 -0.00087011 -2.091 -0.0010015 479.3093815765586 40.972 0.19506 44.644 44.584 44.779 3.6719 30 17 2 0 0 0 0.68478 1 8194 8194 0.094841 0 1 74458 + 36953 18551 23377 23388 42142 42142 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN48_class_I_Rep_1 5 478.97479248046875 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 56.647 1 60.148 59.648 60.648 3.5014 0 0 0 0.38417 1 12207 12207 0.094841 0 1 + 36954 18551 23377 23388 42143 42143 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN48_class_I_Rep_2 6 478.97491455078125 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 57.757 1 61.271 60.771 61.771 3.5142 0 0 0 0.38417 1 12518 12518 0.094841 0 1 + 36955 18551 23377 23388 42144 42144 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN48_class_I_Rep_3 7 478.9750671386719 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 49.915 1 53.536 53.036 54.036 3.621 0 0 0 0.38417 1 10071 10071 0.36667 0 1 + 36956 18551 23377 23388 42145 42145 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS UPN48_class_I_Rep_3 7 479.3099365234375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 55.381 1 58.936 58.436 59.436 3.5554 0 0 0 0.38417 1 11734 11734 0.094841 0 1 + 36957 18551 23377 23388 42146 42146 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 478.975788 1433.90553 -0.27437 -0.00013142 -1.8166 -0.00087011 -2.091 -0.0010015 479.3093815765586 40.972 0.19506 44.644 44.584 44.779 3.6719 -0.10684 0.00024127 NaN 0.094841 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 74458 + 36958 18551 23377 23388 0.20593698547577333 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MULTI-MATCH UPN47_class_I_Rep_2 3 3 478.975788 1433.90553 -0.2338 -0.00011198 -2.0703 -0.00099164 -2.3041 -0.0011036 479.3092641825348 41.492 0.54253 44.858 44.543 45.085 3.3655 0.10684 -0.00012333 NaN 0.094841 52 45 2 NaN NaN NaN NaN 0 NaN NaN 0 86430 + 36959 18551 23377 23388 0.20593698547577333 RLRKNRPPS 9 Unmodified _RLRKNRPPS_ 0 0 0 REV__L1MA8_dup5636|chr9:90816644-90817020:-|1.322244843353653|0.0024760120334214|9.06|150.0|14|3|sense REV__L1MA8_dup5636|chr9:90816644-90817020:-|1.322244843353653|0.0024760120334214|9.06|150.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 562.3436279296875 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 85.514 1 85.514 85.014 86.014 0 0 0 0 0.4007 1 20403 20403 0.52476 0 1 + 36960 25561 23378 23389 42147 42147 0.11697856196815337 RLRKQEERLR 10 Unmodified _RLRKQEERLR_ 0 0 0 ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D ENSG00000215186|ENST00000421285|GOLGA6B ENSG00000215186|ENST00000421285|GOLGA6B MULTI-MSMS UPN46_class_I_Rep_3 1 461.94854736328125 3 461.947898 1382.82186 0.21767 0.00010055 1.1024 0.00050927 1.3201 0.00060982 461.94847320431916 106.95 0.22697 106.95 106.77 107 0 54 25 4 0 0 0 0.5614 1 26084 26084 2.8433 0 1 5350200 36961 3178 23379 23390 42148 42148 0.14576542379882085 RLRKQEERLR 10 Unmodified _RLRKQEERLR_ 0 0 0 ENSG00000215186|ENST00000421285|GOLGA6B;ENSG00000167195|ENST00000300576|GOLGA6C;ENSG00000159289|ENST00000290438|GOLGA6A;ENSG00000140478|ENST00000434739|GOLGA6D ENSG00000215186|ENST00000421285|GOLGA6B ENSG00000215186|ENST00000421285|GOLGA6B MSMS UPN48_class_I_Rep_1 5 461.94854736328125 3 461.947898 1382.82186 NaN NaN NaN NaN NaN NaN NaN 102.71 1 106.33 105.83 106.83 3.6164 0 0 0 0.53105 1 24759 24759 2.6312 0 1 36962 3178 23379 23390 42149 42149 0.14576542379882085 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.63983154296875 3 488.306531 1461.89776 0.30652 0.00014968 -0.49709 -0.00024273 -0.19057 -9.3058E-05 488.306286571913 62.606 0.42987 66.08 65.848 66.278 3.4738 42 27 3 0 0 0 0.56463 2 14006 14006;14009 0.56317 0.15491 1 137580 36963 11255 23380 23391 42150;42151 42150 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.6406555175781 3 488.306531 1461.89776 0.29501 0.00014405 -0.53649 -0.00026197 -0.24148 -0.00011792 488.3062267423905 64.167 0.34203 67.642 67.459 67.801 3.4743 35 26 2 0 0 0 0.56463 1 14464 14464 0.56317 0.1965 1 90373 36964 11255 23380 23391 42152 42152 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.3074035644531 3 488.306531 1461.89776 0.24074 0.00011755 -0.4654 -0.00022726 -0.22466 -0.0001097 488.3063575603064 61.555 0.19933 65.068 64.997 65.197 3.5129 21 15 2 0 0 0 0.56444 1 13619 13619 0.69767 0.19171 1 85368 36965 11255 23380 23391 42153 42153 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.30670166015625 3 488.306531 1461.89776 0.25292 0.0001235 -0.5384 -0.0002629 -0.28548 -0.0001394 488.3063033655758 63.08 0.28408 66.589 66.409 66.693 3.5091 27 20 2 0 0 0 0.56444 1 14089 14089 0.69767 0.24315 1 101310 36966 11255 23380 23391 42154 42154 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 488.306531 1461.89776 0.23297 0.00011376 -2.9268 -0.0014292 -2.6939 -0.0013154 488.3052056984591 67.022 0.042297 67.022 66.987 67.029 0 0.21689 -0.0033705 NaN 0.69767 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 74665 36967 11255 23380 23391 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 488.306531 1461.89776 0.30136 0.00014716 -0.36463 -0.00017805 -0.063274 -3.0897E-05 488.30631336527176 61.791 0.21837 65.258 65.225 65.444 3.4678 0.095219 4.909E-05 NaN 0.69767 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 121430 36968 11255 23380 23391 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 488.306531 1461.89776 0.30091 0.00014694 -0.66943 -0.00032689 -0.36852 -0.00017995 488.30602941576234 63.331 0.13794 66.805 66.737 66.874 3.4738 -0.00065706 -6.3617E-05 NaN 0.69767 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 80674 36969 11255 23380 23391 0.1852898407066732 RLRKRERRHR 10 Unmodified _RLRKRERRHR_ 0 0 0 L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 488.306531 1461.89776 0.26445 0.00012913 -0.49341 -0.00024094 -0.22897 -0.00011181 488.306207688711 64.444 0.047401 67.952 67.918 67.966 3.5083 0.15537 4.924E-05 NaN 0.56317 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 45824 36970 11255 23380 23391 0.1852898407066732 RLRKRRRKRRG 11 Unmodified _RLRKRRRKRRG_ 0 0 0 Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|27|2|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|27|2|anti-sense Tigger2_dup1092|chr6:34332139-34332504:-|1.2558330830388231|0.0108754018152826|6.85|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_2 3 513.8078002929688 3 513.345208 1537.0138 NaN NaN NaN NaN NaN NaN NaN 72.01 1 75.3 74.8 75.8 3.2899 0 0 0 0.38417 1 17631 17631 0.094841 0.094841 1 36971 33269 23381 23392 42155 42155 0.2667692764134699 RLRKVCVVER 10 Unmodified _RLRKVCVVER_ 0 0 0 REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF MSMS UPN46_class_I_Rep_3 1 629.3834228515625 2 629.382249 1256.74994 NaN NaN NaN NaN NaN NaN NaN 21.206 1 21.206 20.706 21.706 0 0 0 0 0.53105 1 2332 2332 1.4819 0 1 + 36972 22165 23382 23393 42156 42156 0.13183911701798934 RLRLHHRIRE 10 Unmodified _RLRLHHRIRE_ 0 0 0 L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|67|3|sense L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|67|3|sense L1MC3_dup7485|chrX:107082628-107084901:-|5.715857217973628|0.3649514377649216|3.97|151.0|67|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 461.9484558105469 3 462.616482 1384.82762 0.21893 0.00010128 0.75859 0.00035094 0.97752 0.00045222 462.61685682248503 107.12 0.14669 107.12 107.06 107.21 0 27 17 2 0 0 0 0.84575 1 26119 26119 3.0723 0.22898 1 552080 36973 11371 23383 23394 42157 42157 0.15059685682194868 RLRLKKRLRKR 11 Unmodified _RLRLKKRLRKR_ 0 0 0 REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF MSMS UPN46_class_I_Rep_3 1 508.35870361328125 3 508.358343 1522.0532 NaN NaN NaN NaN NaN NaN NaN 59.437 1 59.437 58.937 59.937 0 0 0 0 0.38417 1 13139 13139 0 0 1 + 36974 22967 23384 23395 42158 42158 0.313056348722057 RLRLKKRLRKR 11 Unmodified _RLRLKKRLRKR_ 0 0 0 REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF MSMS UPN46_class_I_Rep_3 1 508.3580017089844 3 508.358343 1522.0532 NaN NaN NaN NaN NaN NaN NaN 68.223 1 68.223 67.723 68.723 0 0 0 0 0.38417 1 15566 15566 0 0 1 + 36975 22967 23384 23395 42159 42159 0.313056348722057 RLRLKKRLRKR 11 Unmodified _RLRLKKRLRKR_ 0 0 0 REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF MSMS UPN46_class_I_Rep_3 1 508.3583984375 3 508.358343 1522.0532 NaN NaN NaN NaN NaN NaN NaN 69.582 1 69.582 69.082 70.082 0 0 0 0 0.38417 1 15953 15953 0 0 1 + 36976 22967 23384 23395 42160 42160 0.313056348722057 RLRLKKRLRKR 11 Unmodified _RLRLKKRLRKR_ 0 0 0 REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF REV__ENST00000552369.5_1_12:49233297-49239534:-|nuORF MSMS UPN46_class_I_Rep_3 1 508.3585205078125 3 508.358343 1522.0532 NaN NaN NaN NaN NaN NaN NaN 70.735 1 70.735 70.235 71.235 0 0 0 0 0.38417 1 16270 16270 0 0 1 + 36977 22967 23384 23395 42161 42161 0.313056348722057 RLRMVWRRKRK 11 Unmodified _RLRMVWRRKRK_ 0 0 0 nc|ENSG00000155324|Q96HH9-2|GRAMD2B;ENST00000285689.7_2_5:125759302-125805397:+|nuORF;ENST00000544396.5_2_5:125759302-125807964:+|nuORF nc|ENSG00000155324|Q96HH9-2|GRAMD2B nc|ENSG00000155324|Q96HH9-2|GRAMD2B MSMS UPN46_class_I_Rep_3 1 529.001708984375 3 529.00005 1583.97832 NaN NaN NaN NaN NaN NaN NaN 87.538 1 87.538 87.038 88.038 0 0 0 0 0.38417 1 20979 20979 0 0 1 36978 16716 23385 23396 42162 42162 0.20969129069339942 RLRNCQDPI 9 Unmodified _RLRNCQDPI_ 0 0 0 ENSG00000135298|ENST00000370598|ADGRB3;nc|ENSG00000135298|O60242-2|ADGRB3 ENSG00000135298|ENST00000370598|ADGRB3 ENSG00000135298|ENST00000370598|ADGRB3 MSMS UPN48_class_I_Rep_3 7 557.79443359375 2 557.792932 1113.57131 NaN NaN NaN NaN NaN NaN NaN 24.601 1 28.37 27.87 28.87 3.769 0 0 0 0.39598 1 2872 2872 1.6526 0 1 36979 2895 23386 23397 42163 42163 0.019068220629151256 RLRNLNTL 8 Unmodified _RLRNLNTL_ 0 0 0 ENSG00000130508|ENST00000252804|PXDN;nc|ENSG00000130508|Q92626-2|PXDN ENSG00000130508|ENST00000252804|PXDN ENSG00000130508|ENST00000252804|PXDN MSMS UPN47_class_I_Rep_1 2 500.30706787109375 2 500.306532 998.598512 NaN NaN NaN NaN NaN NaN NaN 88.005 1 91.662 91.162 92.162 3.6563 0 0 0 0.40625 1 22005 22005 2.3027 0.24298 1 36980 2658 23387 23398 42164 42164 0.09915673665602753 RLRNLPKA 8 Unmodified _RLRNLPKA_ 0 0 0 ENST00000521383.5_1_8:104258897-104310599:-|nuORF ENST00000521383.5_1_8:104258897-104310599:-|nuORF ENST00000521383.5_1_8:104258897-104310599:-|nuORF MSMS UPN47_class_I_Rep_1 2 484.3111877441406 2 484.311618 966.608683 NaN NaN NaN NaN NaN NaN NaN 111.92 1 115.49 114.99 115.99 3.572 0 0 0 0.40746 1 27610 27610 0.69038 0 1 36981 7233 23388 23399 42165 42165 0.12404281390820415 RLRNQLRWK 9 Unmodified _RLRNQLRWK_ 0 0 0 REV__ENST00000382622.3_1_12:3600592-3600649:+|nuORF REV__ENST00000382622.3_1_12:3600592-3600649:+|nuORF MSMS UPN48_class_I_Rep_3 7 635.3836669921875 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 69.988 1 73.501 73.001 74.001 3.5128 0 0 0 0.4007 1 16163 16163 0.52476 0 1 + 36982 22070 23389 23400 42166 42166 0.13417807013570382 RLRNTLTT 8 Unmodified _RLRNTLTT_ 0 0 0 REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|81|3|sense REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|81|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.7903137207031 2 487.790715 973.566878 0.17797 8.6814E-05 0.32399 0.00015804 0.50196 0.00024485 487.7906699083937 76.26 0.42945 79.77 79.569 79.998 3.5102 80 50 2 0 0 0 0.82752 1 18056 18056 0.69038 0 1 83133 + 36983 23636 23390 23401 42167 42167 0.0790368091164737 RLRNTLTT 8 Unmodified _RLRNTLTT_ 0 0 0 REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|81|3|sense REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|81|3|sense MSMS UPN48_class_I_Rep_2 6 487.7913513183594 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 72.916 1 76.48 75.98 76.98 3.5645 0 0 0 0.40746 1 17096 17096 0.69038 0 1 + 36984 23636 23390 23401 42168 42168 0.0790368091164737 RLRNTLTT 8 Unmodified _RLRNTLTT_ 0 0 0 REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|81|3|sense REV__HERVE_a-int_dup78|chr8:53733192-53736173:+|1.3718733179792972|0.081517735985991|4.07|151.0|81|3|sense MSMS UPN48_class_I_Rep_2 6 487.7906188964844 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 74.245 1 77.823 77.323 78.323 3.5779 0 0 0 0.40746 1 17463 17463 0.69038 0 1 + 36985 23636 23390 23401 42169 42169 0.0790368091164737 RLRPAYFV 8 Unmodified _RLRPAYFV_ 0 0 0 REV__nc|ENSG00000137710|P35241-4|RDX REV__nc|ENSG00000137710|P35241-4|RDX MULTI-MSMS UPN47_class_I_Rep_1 2 511.30010986328125 2 511.300719 1020.58688 0.13471 6.888E-05 -1.5153 -0.00077477 -1.3806 -0.00070589 511.2998671830187 51.429 0.55198 55.022 54.658 55.21 3.5932 46 27 2 0 0 0 0.82752 1 11278 11278 0.79363 0 1 72551 + 36986 18037 23391 23402 42170 42170 0.07741476642263478 RLRPWAPV 8 Unmodified _RLRPWAPV_ 0 0 0 REV__ENST00000361658.6_1_17:19687046-19689386:-|nuORF REV__ENST00000361658.6_1_17:19687046-19689386:-|nuORF MSMS UPN47_class_I_Rep_3 4 497.7984619140625 2 497.800886 993.587219 NaN NaN NaN NaN NaN NaN NaN 65.297 1 68.476 67.976 68.976 3.1795 0 0 0 0.40604 1 15673 15673 2.5775 0 1 + 36987 21905 23392 23403 42171 42171 0.09016896362118132 RLRQAAPVVPT 11 Unmodified _RLRQAAPVVPT_ 0 0 0 REV__AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|11|3|sense REV__AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 604.36669921875 2 604.367121 1206.71969 0.54627 0.00033015 -1.1584 -0.0007001 -0.61213 -0.00036995 604.3663846786433 107.35 0.15176 111.03 110.88 111.04 3.6813 17 9 3 0 0 0 0.4608 1 25295 25295 8.7454 0.58988 1 721650 + 36988 16988 23393 23404 42172 42172 0.12459876308253115 RLRQWQRRPV 10 Unmodified _RLRQWQRRPV_ 0 0 0 ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENST00000563065.5_1_15:43477607-43487036:+|nuORF ENST00000569745.5_1_15:43477607-43487036:+|nuORF ENST00000569745.5_1_15:43477607-43487036:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 466.2637634277344 3 465.612849 1393.81672 -0.35077 -0.00016333 -1.2365 -0.00057571 -1.5872 -0.00073904 465.6123526177997 30.438 0.20489 34.182 34.041 34.246 3.7449 21 15 2 0 0 0 0.84575 1 4949 4949 0.69767 0.69767 1 48029 36989 7469 23394 23405 42173 42173 0.13556283307889316 RLRQWQRRPV 10 Unmodified _RLRQWQRRPV_ 0 0 0 ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENST00000563065.5_1_15:43477607-43487036:+|nuORF ENST00000569745.5_1_15:43477607-43487036:+|nuORF ENST00000569745.5_1_15:43477607-43487036:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 465.612849 1393.81672 -0.38582 -0.00017964 -1.0564 -0.00049188 -1.4422 -0.00067152 465.6123779763365 30.669 0.29389 34.151 34.029 34.322 3.4821 -0.015831 5.7326E-05 NaN 0.69767 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 62756 36990 7469 23394 23405 0.13556283307889316 RLRRFWTE 8 Unmodified _RLRRFWTE_ 0 0 0 L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|54|1|anti-sense;L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|264|2|anti-sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|54|1|anti-sense L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.3238525390625 2 582.325257 1162.63596 NaN NaN NaN NaN NaN NaN NaN 48.825 1 52.506 52.006 53.006 3.6819 0 0 0 0.40746 1 10568 10568 0.69038 0.088878 1 36991 14748 23395 23406 42174 42174 0.061147649312033536 RLRRLLDFW 9 Unmodified _RLRRLLDFW_ 0 0 0 REV__AluJb_dup10138|chr1:206701552-206701856:+|1.1185108817227272|0.0171765571603535|6.02|151.0|4|2|sense REV__AluJb_dup10138|chr1:206701552-206701856:+|1.1185108817227272|0.0171765571603535|6.02|151.0|4|2|sense MSMS UPN46_class_I_Rep_3 1 637.8794555664062 2 637.877656 1273.74076 NaN NaN NaN NaN NaN NaN NaN 44.578 1 44.578 44.078 45.078 0 0 0 0 0.4007 1 8994 8994 0.52476 0 1 + 36992 16912 23396 23407 42175 42175 0.11483886407768296 RLRRLRIGR 9 Unmodified _RLRRLRIGR_ 0 0 0 REV__ENST00000238936.8_2_10:104221160-104225841:+|nuORF REV__ENST00000238936.8_2_10:104221160-104225841:+|nuORF MSMS UPN46_class_I_Rep_3 1 598.3995361328125 2 598.402164 1194.78978 NaN NaN NaN NaN NaN NaN NaN 64.367 1 64.367 63.867 64.867 0 0 0 0 0.4007 1 14485 14485 0.52476 0 1 + 36993 21503 23397 23408 42176 42176 0.20017219487363036 RLRRLRRPVP 10 Unmodified _RLRRLRRPVP_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|317|1|anti-sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|317|1|anti-sense MSMS UPN47_class_I_Rep_1 2 440.292236328125 3 440.29334 1317.85819 NaN NaN NaN NaN NaN NaN NaN 56.699 1 60.156 59.656 60.656 3.4572 0 0 0 0.53105 1 12969 12969 0.15932 0 1 + 36994 23580 23398 23409 42177 42177 0.21197464067245164 RLRRNFSP 8 Unmodified _RLRRNFSP_ 0 0 0 REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 523.8057861328125 2 523.304324 1044.5941 0.32995 0.00017266 -1.1407 -0.00059692 -0.81072 -0.00042425 523.3034996857662 95.261 0.11784 95.261 95.172 95.289 0 24 11 3 0 0 0 0.82752 1 23113 23113 5.2307 0 1 1439000 + 36995 21839 23399 23410 42178 42178 0.0735820924271593 RLRRNFSP 8 Unmodified _RLRRNFSP_ 0 0 0 REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 523.304324 1044.5941 0.41251 0.00021587 -1.7163 -0.00089815 -1.3038 -0.00068228 523.3033361417436 91.831 0.48824 95.537 95.39 95.878 3.7053 0.14277 -0.00043975 NaN 5.2307 100 63 2 NaN NaN NaN NaN 0 NaN NaN 0 328130 + 36996 21839 23399 23410 0.0735820924271593 RLRRNFSP 8 Unmodified _RLRRNFSP_ 0 0 0 REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.304324 1044.5941 0.20453 0.00010703 -1.1646 -0.00060942 -0.96003 -0.00050239 523.303512853067 91.888 0.47618 95.353 95.206 95.682 3.4652 -0.040902 0.00013772 NaN 5.2307 91 67 3 NaN NaN NaN NaN 0 NaN NaN 0 372240 + 36997 21839 23399 23410 0.0735820924271593 RLRRNFSP 8 Unmodified _RLRRNFSP_ 0 0 0 REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 523.304324 1044.5941 0.39009 0.00020413 -1.2304 -0.00064385 -0.84027 -0.00043972 523.303588918706 91.998 0.44289 95.401 95.229 95.671 3.4034 0.0075121 6.8845E-05 NaN 5.2307 101 62 2 NaN NaN NaN NaN 0 NaN NaN 0 250780 + 36998 21839 23399 23410 0.0735820924271593 RLRRNFSP 8 Unmodified _RLRRNFSP_ 0 0 0 REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF REV__ENST00000344537.9_1_6:15615611-15627671:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 523.304324 1044.5941 0.42995 0.00022499 -1.1347 -0.0005938 -0.70477 -0.00036881 523.3035950471152 91.554 0.45024 95.417 95.282 95.733 3.8634 0.023661 0.00016895 NaN 5.2307 98 62 2 NaN NaN NaN NaN 0 NaN NaN 0 837310 + 36999 21839 23399 23410 0.0735820924271593 RLRRNSKLMV 10 Unmodified _RLRRNSKLMV_ 0 0 0 HAL1ME_dup3215|chr6:35610942-35611311:-|1.0822548956932798|0.0718957160411848|3.91|151.0|13|3|sense HAL1ME_dup3215|chr6:35610942-35611311:-|1.0822548956932798|0.0718957160411848|3.91|151.0|13|3|sense HAL1ME_dup3215|chr6:35610942-35611311:-|1.0822548956932798|0.0718957160411848|3.91|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 636.8870239257812 2 636.887698 1271.76084 NaN NaN NaN NaN NaN NaN NaN 36.282 1 36.282 35.782 36.782 0 0 0 0 0.53105 1 6708 6708 0.45834 0 1 37000 7960 23400 23411 42179 42179 0.13583314076072384 RLRRRQFD 8 Unmodified _RLRRRQFD_ 0 0 0 REV__ENST00000553943.1_1_14:69616197-69619695:-|nuORF REV__ENST00000553943.1_1_14:69616197-69619695:-|nuORF MSMS UPN47_class_I_Rep_1 2 573.8321533203125 2 573.83378 1145.65301 NaN NaN NaN NaN NaN NaN NaN 19.653 1 23.265 22.765 23.765 3.6118 0 0 0 0.40753 1 1847 1847 0.6015 0 1 + 37001 19327 23401 23412 42180 42180 0.08600685537021491 RLRTELELLR 10 Unmodified _RLRTELELLR_ 0 0 0 REV__nc|ENSG00000122966|O14578-3|CIT REV__nc|ENSG00000122966|O14578-3|CIT MSMS UPN48_class_I_Rep_3 7 649.8986206054688 2 649.898786 1297.78302 NaN NaN NaN NaN NaN NaN NaN 94.198 1 98.089 97.589 98.589 3.8914 0 0 0 0.53105 1 22325 22325 1.3295 0 1 + 37002 18768 23402 23413 42181 42181 0.14603817025476928 RLRVAARH 8 Unmodified _RLRVAARH_ 0 0 0 REV__nc|ENSG00000096070|Q9ULD4-3|BRPF3 REV__nc|ENSG00000096070|Q9ULD4-3|BRPF3 MSMS UPN48_class_I_Rep_1 5 489.8056945800781 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 70.893 1 74.359 73.859 74.859 3.466 0 0 0 0.40625 1 16544 16544 2.3027 0 1 + 37003 18057 23403 23414 42182 42182 0.10981932825166041 RLRWALQL 8 Unmodified _RLRWALQL_ 0 0 0 REV__ENST00000297205.6_1_7:89783709-89789076:+|nuORF REV__ENST00000297205.6_1_7:89783709-89789076:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 528.2982788085938 2 528.327268 1054.63998 0.49472 0.00026137 -1.5114 -0.00079849 -1.0166 -0.00053712 528.3264689449062 63.758 0.33027 67.267 67.158 67.489 3.5091 30 25 2 0 0 0 0.72333 1 14276 14276 19.439 0 1 93971 + 37004 21660 23404 23415 42183 42183 0.11484854424929836 RLRWVDRLR 9 Unmodified _RLRWVDRLR_ 0 0 0 AluSq2_dup41516|chr12:104481848-104482110:-|1.2241406358612803|0.0062621879501464|7.61|151.0|1|1|sense;AluSz_dup92765|chr19:8496443-8496754:+|4.170741618909828|0.0603388337443752|6.11|151.0|3|2|sense;AluSq2_dup19117|chr6:7245114-7245410:+|1.3543894157080896|0.2548605346779008|2.41|151.0|4|2|sense AluSq2_dup41516|chr12:104481848-104482110:-|1.2241406358612803|0.0062621879501464|7.61|151.0|1|1|sense AluSq2_dup41516|chr12:104481848-104482110:-|1.2241406358612803|0.0062621879501464|7.61|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 635.3854370117188 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 69.973 1 73.249 72.749 73.749 3.2761 0 0 0 0.4007 1 17022 17022 0.52476 0 1 37005 250 23405 23416 42184 42184 0.1341780701359312 RLRYDVVG 8 Unmodified _RLRYDVVG_ 0 0 0 ENSG00000180767|ENST00000319340|CHST13 ENSG00000180767|ENST00000319340|CHST13 ENSG00000180767|ENST00000319340|CHST13 MULTI-SECPEP UPN48_class_I_Rep_2 6 488.7766418457031 2 489.279983 976.545414 0.25179 0.0001232 -3.4824 -0.0017039 -3.2306 -0.0015807 489.2780789390301 71.258 0.077522 74.808 74.762 74.839 3.5505 11 8 2 0 0 0 0.72333 1 16608 16608 2.5775 0 1 58329 37006 4897 23406 23417 42185 42185 0.05620295882943083 RLRYLCRY 8 Unmodified _RLRYLCRY_ 0 0 0 REV__L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|251|3|anti-sense REV__L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|251|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 571.8138427734375 2 571.81621 1141.61787 0.46705 0.00026706 -4.0776 -0.0023316 -3.6105 -0.0020646 571.8134651397481 55.672 0.091774 59.18 59.129 59.221 3.5082 8 4 2 0 0 0 0.82752 1 11911 11911 5.2307 0 1 111410 + 37007 25316 23407 23418 42186 42186 0.05272306684855721 RLSINALQI 9 Unmodified _RLSINALQI_ 0 0 0 REV__L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|38|1|anti-sense REV__L1MC1_dup11100|chr15:44355915-44356888:+|2.553836362242928|0.043845488122834|5.86|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_1 5 514.3167724609375 2 514.316566 1026.61858 NaN NaN NaN NaN NaN NaN NaN 61.64 1 65.108 64.608 65.608 3.4678 0 0 0 0.38073 1 13731 13731 5.2969 0 1 + 37008 26492 23408 23419 42187 42187 0.10633424605566688 RLSLKLLRAF 10 Unmodified _RLSLKLLRAF_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MSMS UPN48_class_I_Rep_1 5 406.2326965332031 3 406.267797 1215.78156 NaN NaN NaN NaN NaN NaN NaN 36.14 1 39.65 39.15 40.15 3.5101 0 0 0 0.53105 1 6000 6000 0.69767 0 1 37009 1717 23409 23420 42188 42188 0.18230227727394777 RLSLKQYNR 9 Unmodified _RLSLKQYNR_ 0 0 0 REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|141|3|sense REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|141|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3433227539062 2 589.343646 1176.67274 0.54442 0.00032085 -0.96834 -0.00057068 -0.42391 -0.00024983 589.3427938623826 100.58 0.12344 100.58 100.48 100.6 0 27 13 3 0 0 0 0.49026 1 24510 24510 1.6526 0 1 354880 + 37010 29685 23410 23421 42189 42189 0.09147016757128767 RLSLKQYNR 9 Unmodified _RLSLKQYNR_ 0 0 0 REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|141|3|sense REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|141|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 589.343646 1176.67274 0.40903 0.00024106 -0.85707 -0.00050511 -0.44804 -0.00026405 589.3429748937476 96.874 0.68257 100.48 100.26 100.94 3.6088 -0.052734 4.023E-05 NaN 1.6526 125 80 2 NaN NaN NaN NaN 0 NaN NaN 0 339750 + 37011 29685 23410 23421 0.09147016757128767 RLSLKQYNR 9 Unmodified _RLSLKQYNR_ 0 0 0 REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|141|3|sense REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|141|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 589.343646 1176.67274 0.48272 0.00028449 -0.7834 -0.00046169 -0.30068 -0.0001772 589.3430281751947 96.794 0.63557 100.57 100.24 100.87 3.7804 0.039659 0.00012706 NaN 1.6526 162 81 3 NaN NaN NaN NaN 0 NaN NaN 0 264480 + 37012 29685 23410 23421 0.09147016757128767 RLSLLEPFN 9 Unmodified _RLSLLEPFN_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS UPN48_class_I_Rep_1 5 544.808349609375 2 544.808574 1087.60259 0.46331 0.00025241 -0.17807 -9.7015E-05 0.28523 0.0001554 544.8083608245854 73.243 0.19569 76.725 76.614 76.81 3.4812 30 15 3 0 0 0 0.15547 1 17245 17245 24.991 3.454 1 293740 + 37013 19237 23411 23422 42190 42190 0.062297183686723656 RLSLLEPFN 9 Unmodified _RLSLLEPFN_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS UPN48_class_I_Rep_3 7 544.809326171875 2 544.808574 1087.60259 0.53962 0.00029399 -0.32255 -0.00017573 0.21706 0.00011826 544.808364379764 73.144 0.083267 76.681 76.634 76.717 3.5373 12 7 2 0 0 0 0.14216 1 17098 17098 26.268 1.2772 1 233430 + 37014 19237 23411 23422 42191 42191 0.062297183686723656 RLSLPAWP 8 Unmodified _RLSLPAWP_ 0 0 0 REV__nc|ENSG00000071967|Q53TN4-3|CYBRD1 REV__nc|ENSG00000071967|Q53TN4-3|CYBRD1 MULTI-MSMS UPN48_class_I_Rep_2 6 470.275146484375 2 470.27417 938.533787 0.20675 9.7227E-05 -1.2414 -0.00058381 -1.0347 -0.00048658 470.2746012576089 93.045 0.024994 96.815 96.804 96.829 3.77 5 3 2 0 0 0 0.82752 1 22133 22133 0.79363 0 1 332520 + 37015 17818 23412 23423 42192 42192 0.06206098859593112 RLSTGTIRA 9 Unmodified _RLSTGTIRA_ 0 0 0 REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 487.79052734375 2 487.790715 973.566878 0.22452 0.00010952 0.068295 3.3314E-05 0.29282 0.00014283 487.79064870017964 87.874 0.67336 91.53 91.303 91.976 3.6563 150 75 3 0 0 0 0.41259 1 21907 21907 7.2892 7.2892 1 218260 + 37016 31928 23413 23424 42193 42193 0.0790368091164737 RLSTGTIRA 9 Unmodified _RLSTGTIRA_ 0 0 0 REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant MULTI-MSMS UPN48_class_I_Rep_3 7 487.7906494140625 2 487.790715 973.566878 0.25475 0.00012426 0.063654 3.105E-05 0.3184 0.00015531 487.79059746204166 87.619 0.28624 91.409 91.368 91.654 3.7905 63 34 3 0 0 0 0.37599 1 20780 20780 9.3831 9.3831 1 361170 + 37017 31928 23413 23424 42194 42194 0.0790368091164737 RLSTGTIRA 9 Unmodified _RLSTGTIRA_ 0 0 0 REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 487.790715 973.566878 0.15424 7.5237E-05 0.15678 7.6474E-05 0.31102 0.00015171 487.79065060162736 87.672 0.72934 91.291 90.958 91.687 3.6187 -0.096781 7.8872E-05 NaN 9.3831 160 78 3 NaN NaN NaN NaN 0 NaN NaN 0 451120 + 37018 31928 23413 23424 0.0790368091164737 RLSTGTIRA 9 Unmodified _RLSTGTIRA_ 0 0 0 REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant REV__MXRA5|p.P2153L|1|0.16|ENSG00000101825|chrX:3317223-3317223|G/A|missense_variant MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 487.790715 973.566878 0.25475 0.00012426 0.063654 3.105E-05 0.3184 0.00015531 487.79059746204166 87.619 0.28624 91.409 91.368 91.654 3.7905 0.0215 -1.1976E-05 NaN 9.3831 63 34 3 NaN NaN NaN NaN 0 NaN NaN 0 361170 + 37019 31928 23413 23424 0.0790368091164737 RLSTLKNFK 9 Unmodified _RLSTLKNFK_ 0 0 0 REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|129|2|anti-sense REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|129|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.83740234375 2 553.837665 1105.66078 0.060233 3.3359E-05 -0.31554 -0.00017476 -0.25531 -0.0001414 553.8374410226396 42.694 0.93127 46.381 46.061 46.992 3.6875 114 65 2 0 0 0 0.49026 1 8890 8890 1.6526 0 1 139630 + 37020 25219 23414 23425 42195 42195 0.11217400013924816 RLSVEIWDW 9 Unmodified _RLSVEIWDW_ 0 0 0 ENSG00000154229|ENST00000413366|PRKCA;ENST00000482000.1_1_16:24104137-24122422:+|nuORF;ENSG00000154229.12,PRKCA,chr17,+,I10.1,66689048,66696426|57|7.97|1|intron;ENSG00000154229.12,PRKCA,chr17,+,I10.1,66689048,66696426|57|7.97|2|intron;ENSG00000154229.12,PRKCA,chr17,+,I10.1,66689048,66696426|57|7.97|4|intron;ENSG00000154229.12,PRKCA,chr17,+,I10.1,66689048,66696426|57|7.97|3|intron;ENST00000284384.6_1_17:64637544-64770230:+|nuORF;nc|ENSG00000166501|P05771|PRKCB;ENSG00000166501|ENST00000643927|PRKCB ENSG00000154229|ENST00000413366|PRKCA ENSG00000154229|ENST00000413366|PRKCA MSMS UPN46_class_I_Rep_3 1 401.87786865234375 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 22.723 1 22.723 22.223 23.223 0 0 0 0 0.39518 1 2743 2743 0.96228 0 1 37021 3665 23415 23426 42196 42196 0.015208168803155786 RLSYVFPIK 9 Unmodified _RLSYVFPIK_ 0 0 0 REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS UPN48_class_I_Rep_2 6 561.835693359375 2 561.837134 1121.65972 NaN NaN NaN NaN NaN NaN NaN 79.435 1 83.068 82.568 83.568 3.6331 0 0 0 0.38639 1 18871 18871 3.9444 1.2092 1 + 37022 19783 23416 23427 42197 42197 0.10375185645034435 RLTAAQRI 8 Unmodified _RLTAAQRI_ 0 0 0 nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL nc|ENSG00000162006|Q96KJ4|MSLNL nc|ENSG00000162006|Q96KJ4|MSLNL MULTI-MSMS UPN46_class_I_Rep_3 1 464.7874755859375 2 464.787976 927.561398 -0.066099 -3.0722E-05 -0.3052 -0.00014185 -0.3713 -0.00017258 464.78768077057566 28.624 0.9141 28.624 28.232 29.146 0 94 69 2 0 0 0 0.82752 1 4533 4533 3.5965 0 1 113260 37023 3914 23417 23428 42198 42198 0.09472002119832723 RLTCNLLTL 9 Unmodified _RLTCNLLTL_ 0 0 0 REV__L1MB2_dup2551|chr5:131322161-131322508:-|1.2356687083794995|0.0067637587924881|7.51|151.0|16|3|sense REV__L1MB2_dup2551|chr5:131322161-131322508:-|1.2356687083794995|0.0067637587924881|7.51|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 523.8031616210938 2 523.804977 1045.5954 NaN NaN NaN NaN NaN NaN NaN 63.513 1 66.971 66.471 67.471 3.4578 0 0 0 0.075414 1 14305 14305 29.841 0 1 + 37024 25712 23418 23429 42199 42199 0.07442662496578123 RLTDYISKV 9 Unmodified _RLTDYISKV_ 0 0 0 ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 MULTI-MSMS UPN47_class_I_Rep_2 3 547.8151245117188 2 547.813856 1093.61316 0.29189 0.0001599 0.3301 0.00018083 0.62199 0.00034074 547.8141368409164 47.39 0.44927 50.74 50.447 50.896 3.3492 38 27 2 0 0 0 0.35123 1 10188 10188 10.8 0 1 104360 37025 3371 23419 23430 42200 42200 0.07009701023071102 RLTELSLRRRQ 11 Unmodified _RLTELSLRRRQ_ 0 0 0 nc|ENSG00000034533|Q2TB18-2|ASTE1;ENSG00000034533|ENST00000264992|ASTE1 nc|ENSG00000034533|Q2TB18-2|ASTE1 nc|ENSG00000034533|Q2TB18-2|ASTE1 MULTI-MSMS UPN48_class_I_Rep_3 7 476.6236877441406 3 476.623303 1426.84808 0.21522 0.00010258 1.1435 0.000545 1.3587 0.00064758 476.6238137480598 104.4 0.26737 108.12 107.95 108.22 3.7192 76 38 3 0 0 0 0.67113 1 24671 24671 1.3296 0.11481 1 11292000 37026 844 23420 23431 42201 42201 0.1517281155136061 RLTKQLPQL 9 Unmodified _RLTKQLPQL_ 0 0 0 REV__Tigger1_dup9147|chr12:57327488-57328074:+|1.6947298308557943|0.0982284400651992|4.11|151.0|15|3|sense REV__Tigger1_dup9147|chr12:57327488-57328074:+|1.6947298308557943|0.0982284400651992|4.11|151.0|15|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.845703125 2 548.84549 1095.67643 0.31494 0.00017286 0.13785 7.5659E-05 0.4528 0.00024851 548.8454877369472 51.145 1.0251 54.756 54.254 55.279 3.6105 176 74 3 0 0 0 0.24936 1 10464 10464 17.113 1.8644 1 496940 + 37027 32563 23421 23432 42202 42202 0.1324168653097786 RLTLSITY 8 Unmodified _RLTLSITY_ 0 0 0 REV__HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|220|3|sense REV__HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|220|3|sense MSMS UPN47_class_I_Rep_2 3 483.7841796875 2 483.784567 965.554582 NaN NaN NaN NaN NaN NaN NaN 119.98 1 123.46 122.96 123.96 3.4793 0 0 0 0.40746 1 29411 29411 0.69038 0 1 + 37028 23560 23422 23433 42203 42203 0.07042644448597457 RLTMKRREKIQ 11 Unmodified _RLTMKRREKIQ_ 0 0 0 L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|82|2|sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|82|2|sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|82|2|sense MSMS UPN48_class_I_Rep_1 5 486.95904541015625 3 486.961038 1457.86129 NaN NaN NaN NaN NaN NaN NaN 95.025 1 98.641 98.141 99.141 3.6167 0 0 0 0.38417 1 22875 22875 0.50596 0.09769 1 37029 15394 23423 23434 42204 42204 0.15066926339113706 RLTPAGRRP 9 Unmodified _RLTPAGRRP_ 0 0 0 REV__nc|ENSG00000117602|Q9UKA8-4|RCAN3 REV__nc|ENSG00000117602|Q9UKA8-4|RCAN3 MSMS UPN48_class_I_Rep_3 7 512.3135375976562 2 512.312149 1022.60975 NaN NaN NaN NaN NaN NaN NaN 46.449 1 50.085 49.585 50.585 3.6363 0 0 0 0.39518 1 9009 9009 1.8442 0 1 + 37030 31968 23424 23435 42205 42205 0.09934495759750916 RLTQTFPR 8 Unmodified _RLTQTFPR_ 0 0 0 REV__nc|ENSG00000172794|Q96AX2-3|RAB37 REV__nc|ENSG00000172794|Q96AX2-3|RAB37 MULTI-MSMS UPN46_class_I_Rep_3 1 509.79339599609375 2 509.793258 1017.57196 0.30017 0.00015302 -0.47158 -0.00024041 -0.17141 -8.7385E-05 510.29438166909773 42.927 0.3263 42.927 42.748 43.075 0 45 34 2 0 0 0 0.82752 1 8568 8568 9.3831 2.66 1 158640 + 37031 32062 23425 23436 42206 42206 0.06387984774266897 RLTQTFPR 8 Unmodified _RLTQTFPR_ 0 0 0 REV__nc|ENSG00000172794|Q96AX2-3|RAB37 REV__nc|ENSG00000172794|Q96AX2-3|RAB37 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.793258 1017.57196 -0.22481 -0.00011461 0.11323 5.7722E-05 -0.11158 -5.6885E-05 509.79327894775906 39.296 0.32535 42.534 42.451 42.777 3.238 -0.19613 0.00037934 NaN 9.3831 29 22 2 NaN NaN NaN NaN 0 NaN NaN 0 66122 + 37032 32062 23425 23436 0.06387984774266897 RLTTLNVS 8 Unmodified _RLTTLNVS_ 0 0 0 REV__L1MD3_dup1512|chr5:75591418-75592059:-|1.6371126719658622|0.4951015802255901|1.73|151.0|28|1|anti-sense REV__L1MD3_dup1512|chr5:75591418-75592059:-|1.6371126719658622|0.4951015802255901|1.73|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_2 6 452.26513671875 2 452.266542 902.51853 NaN NaN NaN NaN NaN NaN NaN 51.033 1 54.701 54.201 55.201 3.6679 0 0 0 0.40527 1 10478 10478 3.5965 0 1 + 37033 27471 23426 23437 42207 42207 0.06337187271753919 RLTVERGL 8 Unmodified _RLTVERGL_ 0 0 0 Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|44|3|anti-sense Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|44|3|anti-sense Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|44|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.961669921875 2 472.287808 942.561064 0.19161 9.0495E-05 0.41802 0.00019743 0.60963 0.00028792 472.2879520511211 88.063 0.1954 91.719 91.584 91.779 3.6563 31 20 2 0 0 0 0.82752 1 22001 22001 2.5775 0 1 67417 37034 33139 23427 23438 42208 42208 0.08748582400005489 RLTVERGL 8 Unmodified _RLTVERGL_ 0 0 0 Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|44|3|anti-sense Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|44|3|anti-sense Tigger1_dup5914|chr7:130118205-130118929:-|1.7109259039100764|0.2392595197636668|2.84|151.0|44|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 472.961669921875 2 472.287808 942.561064 0.19161 9.0495E-05 0.41802 0.00019743 0.60963 0.00028792 472.2879520511211 88.063 0.1954 91.719 91.584 91.779 3.6563 31 20 2 0 0 0 0.72333 1 22001 22001 2.5775 0 1 67417 37035 33139 23427 23438 42209 42209 0.08748582400005489 RLTYQSIY 8 Unmodified _RLTYQSIY_ 0 0 0 REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B MSMS UPN46_class_I_Rep_3 1 522.262451171875 2 522.279649 1042.54475 NaN NaN NaN NaN NaN NaN NaN 58.504 1 58.504 58.004 59.004 0 0 0 0 0.39996 1 12880 12880 7.9102 0 1 + 37036 32045 23428 23439 42210 42210 0.025174564432290936 RLVALAIL 8 Unmodified _RLVALAIL_ 0 0 0 REV__L1MC3_dup9535|chr12:111419651-111419988:-|2.2984114139603333|0.0572081114287348|5.33|151.0|26|3|anti-sense REV__L1MC3_dup9535|chr12:111419651-111419988:-|2.2984114139603333|0.0572081114287348|5.33|151.0|26|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 434.80206298828125 2 434.802563 867.590573 0.054741 2.3802E-05 -0.42374 -0.00018424 -0.369 -0.00016044 434.8022977305165 60.247 0.35373 63.646 63.444 63.798 3.3982 42 31 2 0 0 0 0.82752 1 14056 14056 2.3027 0 1 96158 + 37037 26795 23429 23440 42211 42211 0.15148146416106556 RLVAWHIE 8 Unmodified _RLVAWHIE_ 0 0 0 REV__ENST00000496804.5_1_1:39734274-39734415:+|nuORF REV__ENST00000496804.5_1_1:39734274-39734415:+|nuORF MSMS UPN47_class_I_Rep_3 4 512.2891845703125 2 512.290351 1022.56615 NaN NaN NaN NaN NaN NaN NaN 44.601 1 47.845 47.345 48.345 3.2441 0 0 0 0.40746 1 9369 9369 0.69038 0 1 + 37038 22664 23430 23441 42212 42212 0.05576886262588232 RLVCGHWV 8 Unmodified _RLVCGHWV_ 0 0 0 LTR41B_dup610|chr11:69076032-69076518:-|1.03550425678973|0.0714330877164609|3.86|151.0|17|2|anti-sense LTR41B_dup610|chr11:69076032-69076518:-|1.03550425678973|0.0714330877164609|3.86|151.0|17|2|anti-sense LTR41B_dup610|chr11:69076032-69076518:-|1.03550425678973|0.0714330877164609|3.86|151.0|17|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.259521484375 2 485.257997 968.501441 NaN NaN NaN NaN NaN NaN NaN 25.219 1 28.969 28.469 29.469 3.7495 0 0 0 0.40738 1 3425 3425 0.79363 0 1 37039 15641 23431 23442 42213 42213 0.015929881849615413 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 581.8270874023438 2 581.826963 1161.63937 0.40386 0.00023497 -0.13948 -8.1153E-05 0.26438 0.00015382 581.8268075475538 60.447 0.36367 63.829 63.5 63.864 3.3815 93 34 3 0 0 0 0.077454 2 14099 14063;14099 39.213 11.584 1 1080000 37040 3140 23432 23443 42214;42215 42215 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 581.8271484375 2 581.826963 1161.63937 0.40101 0.00023332 -0.16669 -9.6986E-05 0.23432 0.00013633 581.8267771064282 60.597 0.44083 63.978 63.864 64.305 3.3815 86 41 3 0 0 0 0.039218 3 14135 14135;14171;14219 53.317 11.477 1 693540 37041 3140 23432 23443 42216;42217;42218 42216 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 581.8267822265625 2 581.826963 1161.63937 0.39683 0.00023088 -0.28602 -0.00016641 0.11081 6.4472E-05 581.8268477204408 61 0.31107 64.381 64.294 64.605 3.3815 35 24 2 0 0 0 0.12306 2 14259 14256;14259 29.437 7.9002 1 143710 37042 3140 23432 23443 42219;42220 42220 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 581.826904296875 2 581.826963 1161.63937 0.47734 0.00027773 -0.33573 -0.00019534 0.1416 8.2388E-05 581.826700063923 60.849 0.6538 64.115 63.742 64.396 3.2654 145 66 3 0 0 0 0.092386 3 14204 14204;14283;14290 35.612 7.9835 1 672510 37043 3140 23432 23443 42221;42222;42223 42221 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 581.827392578125 2 581.826963 1161.63937 0.46803 0.00027231 -0.30408 -0.00017692 0.16395 9.5391E-05 581.8267556509106 61.136 0.43849 64.401 64.28 64.718 3.2654 66 32 3 0 0 0 0.092386 3 14371 14326;14371;14412 35.612 11.592 1 375180 37044 3140 23432 23443 42224;42225;42226 42225 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 581.8267211914062 2 581.826963 1161.63937 0.38782 0.00022565 -0.34811 -0.00020254 0.039717 2.3109E-05 581.826857148033 61.322 0.51145 64.488 64.327 64.839 3.1651 71 39 2 0 0 0 0.21139 2 14486 14438;14486 19.626 7.3853 1 218200 37045 3140 23432 23443 42227;42228 42228 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MSMS UPN47_class_I_Rep_3 4 581.8271484375 2 581.826963 1161.63937 NaN NaN NaN NaN NaN NaN NaN 60.61 1 63.775 63.275 64.275 3.1651 0 0 0 0.076899 1 14245 14245 29.437 7.9002 1 37046 3140 23432 23443 42229 42229 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MSMS UPN47_class_I_Rep_3 4 581.8263549804688 2 581.826963 1161.63937 NaN NaN NaN NaN NaN NaN NaN 60.851 1 64.016 63.516 64.516 3.1651 0 0 0 0.029162 1 14316 14316 46.022 11.621 1 37047 3140 23432 23443 42230 42230 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MSMS UPN47_class_I_Rep_3 4 581.827392578125 2 581.826963 1161.63937 NaN NaN NaN NaN NaN NaN NaN 60.976 1 64.141 63.641 64.641 3.1651 0 0 0 0.043568 1 14352 14352 39.213 11.584 1 37048 3140 23432 23443 42231 42231 0.06501970194563 RLVEIQYEL 9 Unmodified _RLVEIQYEL_ 0 0 0 ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENST00000551455.5_1_12:110388962-110434038:-|nuORF ENST00000551455.5_1_12:110388962-110434038:-|nuORF MSMS UPN47_class_I_Rep_3 4 581.8272705078125 2 581.826963 1161.63937 NaN NaN NaN NaN NaN NaN NaN 61.11 1 64.275 63.775 64.775 3.1651 0 0 0 0.26021 1 14393 14393 12.873 0.63195 1 37049 3140 23432 23443 42232 42232 0.06501970194563 RLVFFILYT 9 Unmodified _RLVFFILYT_ 0 0 0 L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|50|2|sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|50|2|sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|50|2|sense MSMS UPN46_class_I_Rep_3 1 586.3480834960938 2 586.347335 1170.68012 NaN NaN NaN NaN NaN NaN NaN 106.95 1 106.95 106.45 107.45 0 0 0 0 0.4007 1 26089 26089 0.52476 0 1 37050 12210 23433 23444 42233 42233 0.10160356304845664 RLVIKLIWE 9 Unmodified _RLVIKLIWE_ 0 0 0 L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|18|1|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|18|1|sense L1PB1_dup8380|chrX:118415804-118419707:-|6.505618574008692|0.177658222052644|5.19|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 585.3749389648438 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 42.97 1 42.97 42.47 43.47 0 0 0 0 0.4007 1 8546 8546 0.52476 0 1 37051 15206 23434 23445 42234 42234 0.1555973408749196 RLVLDFFFVG 10 Unmodified _RLVLDFFFVG_ 0 0 0 L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|223|2|anti-sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|223|2|anti-sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|223|2|anti-sense MSMS UPN47_class_I_Rep_2 3 404.8955383300781 3 404.89737 1211.67028 NaN NaN NaN NaN NaN NaN NaN 36.887 1 40.286 39.786 40.786 3.3988 0 0 0 0.53105 1 6972 6972 3.0723 0.44103 1 37052 15178 23435 23446 42235 42235 0.07291168299434503 RLVLEKDR 8 Unmodified _RLVLEKDR_ 0 0 0 ENST00000445771.6_1_7:107254141-107258805:+|nuORF ENST00000445771.6_1_7:107254141-107258805:+|nuORF ENST00000445771.6_1_7:107254141-107258805:+|nuORF MSMS UPN46_class_I_Rep_3 1 515.2758178710938 2 514.81419 1027.61383 NaN NaN NaN NaN NaN NaN NaN 36.656 1 36.656 36.156 37.156 0 0 0 0 0.40501 1 6819 6819 3.9444 0.3479 1 37053 6787 23436 23447 42236 42236 0.1011254046279646 RLVLRRDP 8 Unmodified _RLVLRRDP_ 0 0 0 ENST00000466327.5_1_6:30312945-30313451:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000466327.5_1_6:30312945-30313451:+|nuORF ENST00000466327.5_1_6:30312945-30313451:+|nuORF MSMS UPN47_class_I_Rep_3 4 512.8222045898438 2 512.82235 1023.63015 NaN NaN NaN NaN NaN NaN NaN 68.568 1 71.766 71.266 72.266 3.1977 0 0 0 0.40746 1 16670 16670 0.69038 0 1 37054 5708 23437 23448 42237 42237 0.11927666419546767 RLVQKERER 9 Unmodified _RLVQKERER_ 0 0 0 nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B;ENST00000539843.5_1_12:109921338-109921795:+|nuORF;nc|ENSG00000151148|Q7Z3V4-3|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B MULTI-MSMS UPN46_class_I_Rep_3 1 405.24200439453125 3 405.242311 1212.7051 -0.25478 -0.00010325 -0.097178 -3.9381E-05 -0.35196 -0.00014263 405.2422465515071 27.472 0.74401 27.472 27.063 27.807 0 86 60 2 0 0 0 0.42411 1 4002 4002 6.6304 0.84694 1 85281 37055 3578 23438 23449 42238 42238 0.10725804160119878 RLVQRARRR 9 Unmodified _RLVQRARRR_ 0 0 0 REV__ENSG00000253276|ENST00000523505|CCDC71L REV__ENSG00000253276|ENST00000523505|CCDC71L MSMS UPN47_class_I_Rep_1 2 404.26318359375 3 404.262039 1209.76429 NaN NaN NaN NaN NaN NaN NaN 42.041 1 45.72 45.22 46.22 3.6792 0 0 0 0.40177 1 8505 8505 0.26902 0 1 + 37056 21361 23439 23450 42239 42239 0.16779744964969723 RLVRHHFTF 9 Unmodified _RLVRHHFTF_ 0 0 0 REV__Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|41|3|anti-sense REV__Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 404.89532470703125 3 404.896475 1211.66759 -1.002 -0.00040572 -0.32458 -0.00013142 -1.3266 -0.00053714 404.8962664678789 36.309 0.77073 39.721 39.456 40.227 3.4114 128 55 3 0 0 0 0.48942 2 6753 6753;6927 1.7423 1.7423 1 127310 + 37057 17333 23440 23451 42240;42241 42240 0.07022757685149372 RLVRHHFTF 9 Unmodified _RLVRHHFTF_ 0 0 0 REV__Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|41|3|anti-sense REV__Charlie1a_dup4742|chr14:101861315-101861910:+|1.1354075963702852|0.0339794493525887|5.06|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 404.89593505859375 3 404.896475 1211.66759 -1.2018 -0.0004866 -0.17915 -7.2537E-05 -1.3809 -0.00055914 404.8963685691044 36.452 0.84813 39.707 39.507 40.355 3.2547 125 58 3 0 0 0 0.48942 1 6832 6832 1.7423 1.7423 1 127170 + 37058 17333 23440 23451 42242 42242 0.07022757685149372 RLVSLIAGSA 10 Unmodified _RLVSLIAGSA_ 0 0 0 ENST00000396664.2_1_7:12726639-12728007:+|nuORF ENST00000396664.2_1_7:12726639-12728007:+|nuORF ENST00000396664.2_1_7:12726639-12728007:+|nuORF MSMS UPN47_class_I_Rep_1 2 493.80316162109375 2 493.803291 985.59203 NaN NaN NaN NaN NaN NaN NaN 47.576 1 51.271 50.771 51.771 3.6951 0 0 0 0.53105 1 10188 10188 7.609 0 1 37059 6569 23441 23452 42243 42243 0.09865735714242874 RLVSTIVRVSQ 11 Unmodified _RLVSTIVRVSQ_ 0 0 0 Charlie1_dup27|chr1:27805728-27806660:-|2.1504620103784573|0.4516304419732413|2.25|151.0|31|3|sense Charlie1_dup27|chr1:27805728-27806660:-|2.1504620103784573|0.4516304419732413|2.25|151.0|31|3|sense Charlie1_dup27|chr1:27805728-27806660:-|2.1504620103784573|0.4516304419732413|2.25|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 629.383056640625 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 57.407 1 60.921 60.421 61.421 3.5142 0 0 0 0.38417 1 12413 12413 0.96228 0 1 37060 433 23442 23453 42244 42244 0.1383612813417585 RLVTSFTDR 9 Unmodified _RLVTSFTDR_ 0 0 0 Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|35|3|sense Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|35|3|sense Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 547.7991943359375 2 547.80128 1093.58801 NaN NaN NaN NaN NaN NaN NaN 32.073 1 35.774 35.274 36.274 3.7015 0 0 0 0.3967 1 4829 4829 1.4819 0.68827 1 37061 33314 23443 23454 42245 42245 0.04495646220493654 RLVVESPIWN 10 Unmodified _RLVVESPIWN_ 0 0 0 REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 404.8958740234375 3 404.896029 1211.66626 -0.44932 -0.00018193 0.23806 9.6391E-05 -0.21126 -8.5537E-05 404.89604147553166 36.023 0.87811 39.699 39.359 40.237 3.6762 118 62 3 0 0 0 0.5617 1 6794 6794 2.6312 0 1 169850 + 37062 22882 23444 23455 42246 42246 0.06889078805761528 RLVVRRLGRWI 11 Unmodified _RLVVRRLGRWI_ 0 0 0 ENST00000265748.6_2_7:36429459-36435956:+|nuORF ENST00000265748.6_2_7:36429459-36435956:+|nuORF ENST00000265748.6_2_7:36429459-36435956:+|nuORF MSMS UPN48_class_I_Rep_3 7 475.3086853027344 3 475.308878 1422.90481 NaN NaN NaN NaN NaN NaN NaN 81.499 1 85.184 84.684 85.684 3.685 0 0 0 0.38417 1 19295 19295 0.094841 0 1 37063 6000 23445 23456 42247 42247 0.21026903898541605 RLWFDRSLLRG 11 Unmodified _RLWFDRSLLRG_ 0 0 0 REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|332|3|anti-sense REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|332|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 472.9713134765625 3 473.60536 1417.79425 0.27767 0.00013151 -0.31795 -0.00015058 -0.040286 -1.908E-05 473.60519941718616 53.245 0.62106 56.854 56.511 57.132 3.6098 56 39 2 0 0 0 22.551 1 11075 11075 1.4551 0.24029 1 179460 + 37064 23552 23446 23457 42248 42248 0.1020663911963311 RLWFLHIDF 9 Unmodified _RLWFLHIDF_ 0 0 0 L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|227|2|anti-sense L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|227|2|anti-sense L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|227|2|anti-sense MSMS UPN47_class_I_Rep_2 3 416.228271484375 3 416.229231 1245.66586 NaN NaN NaN NaN NaN NaN NaN 29.143 1 32.635 32.135 33.135 3.4923 0 0 0 0.39841 1 4625 4625 1.0715 0.29493 1 37065 14512 23447 23458 42249 42249 0.05285703876552361 RLWGSSEL 8 Unmodified _RLWGSSEL_ 0 0 0 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 MSMS UPN48_class_I_Rep_2 6 474.2493591308594 2 474.250892 946.48723 NaN NaN NaN NaN NaN NaN NaN 67.529 1 71.025 70.525 71.525 3.4964 0 0 0 0.40404 1 15513 15513 5.2307 0.47466 1 + 37066 19312 23448 23459 42250 42250 0.011846142376612079 RLWHKWLL 8 Unmodified _RLWHKWLL_ 0 0 0 REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12 REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12 MSMS UPN48_class_I_Rep_3 7 576.3609008789062 2 576.345461 1150.67637 NaN NaN NaN NaN NaN NaN NaN 84.593 1 88.342 87.842 88.842 3.7494 0 0 0 0.40746 1 20073 20073 0.69038 0 1 + 37067 19902 23449 23460 42251 42251 0.10705731321650092 RLWHWYQRRLF 11 Unmodified _RLWHWYQRRLF_ 0 0 0 REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF MSMS UPN47_class_I_Rep_2 3 554.1762084960938 3 554.303904 1659.88988 NaN NaN NaN NaN NaN NaN NaN 31.191 1 34.66 34.16 35.16 3.4691 0 0 0 0.38417 1 5249 5249 0 0 1 + 37068 22750 23450 23461 42252 42252 0.08633412030508225 RLWLHWIL 8 Unmodified _RLWLHWIL_ 0 0 0 REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|88|3|sense REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.0808476392361686|0.3393407502360501|1.67|151.0|88|3|sense MSMS UPN48_class_I_Rep_1 5 568.841796875 2 568.840011 1135.66547 NaN NaN NaN NaN NaN NaN NaN 74.616 1 78.106 77.606 78.606 3.49 0 0 0 0.4044 1 17638 17638 4.756 0 1 + 37069 23944 23451 23462 42253 42253 0.10306328947353904 RLWLRGRAPR 10 Unmodified _RLWLRGRAPR_ 0 0 0 REV__ENST00000268383.6_1_16:22385644-22385776:-|nuORF REV__ENST00000268383.6_1_16:22385644-22385776:-|nuORF MSMS UPN48_class_I_Rep_3 7 640.8947143554688 2 640.894172 1279.77379 NaN NaN NaN NaN NaN NaN NaN 51.977 1 55.574 55.074 56.074 3.5979 0 0 0 0.53105 1 10698 10698 3.2813 0 1 + 37070 21603 23452 23463 42254 42254 0.14509513250504824 RLWLRKKK 8 Unmodified _RLWLRKKK_ 0 0 0 L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|19|2|sense L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|19|2|sense L1MEd_dup13124|chrX:72404095-72404983:-|1.555578806744841|0.0170181884265522|6.51|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 564.379150390625 2 564.379835 1126.74512 NaN NaN NaN NaN NaN NaN NaN 44 1 44 43.5 44.5 0 0 0 0 0.40746 1 8830 8830 0.69038 0 1 37071 13165 23453 23464 42255 42255 0.18681395621342745 RLYAIRILIKV 11 Unmodified _RLYAIRILIKV_ 0 0 0 REV__MER1B_dup1701|chr5:32156554-32156898:-|1.9430337349517064|0.0396594370112422|5.61|151.0|24|3|anti-sense REV__MER1B_dup1701|chr5:32156554-32156898:-|1.9430337349517064|0.0396594370112422|5.61|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_3 4 453.3055419921875 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 119.84 1 123.25 122.75 123.75 3.4157 0 0 0 0.38417 1 29608 29608 0.45452 0.35968 1 + 37072 31132 23454 23465 42256 42256 0.23275331858394566 RLYCYAALPM 10 Unmodified _RLYCYAALPM_ 0 0 0 REV__nc|ENSG00000114904|P51957-3|NEK4 REV__nc|ENSG00000114904|P51957-3|NEK4 MSMS UPN48_class_I_Rep_2 6 600.7852172851562 2 600.798837 1199.58312 NaN NaN NaN NaN NaN NaN NaN 13.144 1 16.799 16.299 17.299 3.6549 0 0 0 0.53105 1 205 205 1.8442 0 1 + 37073 18538 23455 23466 42257 42257 -0.008686972381383384 RLYDTHITV 9 Unmodified _RLYDTHITV_ 0 0 0 nc|ENSG00000102226|P51784|USP11;ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF nc|ENSG00000102226|P51784|USP11 nc|ENSG00000102226|P51784|USP11 MULTI-SECPEP UPN47_class_I_Rep_1 2 559.3027954101562 2 559.303655 1116.59276 -0.0022304 -1.2474E-06 0.018164 1.0159E-05 0.015934 8.9117E-06 559.303725836668 41.008 0.57773 44.68 44.493 45.071 3.6719 81 46 2 0 0 0 0.11959 1 8226 8226 8.7454 2.5396 1 107510 37074 1607 23456 23467 42258 42258 0.03912530363277256 RLYDTHITV 9 Unmodified _RLYDTHITV_ 0 0 0 nc|ENSG00000102226|P51784|USP11;ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF nc|ENSG00000102226|P51784|USP11 nc|ENSG00000102226|P51784|USP11 MULTI-MSMS UPN47_class_I_Rep_2 3 559.3040771484375 2 559.303655 1116.59276 0.047728 2.6695E-05 0.13583 7.597E-05 0.18356 0.00010266 559.3037462729895 41.49 0.6987 44.855 44.521 45.22 3.3655 80 56 2 0 0 0 0.32682 2 8345 8298;8345 12.241 2.8575 1 90542 37075 1607 23456 23467 42259;42260 42260 0.03912530363277256 RLYFTMLCM 9 Unmodified _RLYFTMLCM_ 0 0 0 L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|168|3|anti-sense L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|168|3|anti-sense L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|168|3|anti-sense MSMS UPN47_class_I_Rep_1 2 589.2831420898438 2 589.281966 1176.54938 NaN NaN NaN NaN NaN NaN NaN 38.195 1 41.86 41.36 42.36 3.6652 0 0 0 0.4007 1 7334 7334 0.52476 0 1 37076 9412 23457 23468 42261 42261 -0.031834420015229625 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.29730224609375 2 497.297645 992.580737 0.15146 7.5319E-05 0.061874 3.077E-05 0.21333 0.00010609 497.2974998812254 64.382 0.47791 67.738 67.334 67.812 3.3557 88 45 2 0 0 0 0.82752 1 15254 15254 8.5933 0.68312 1 186450 37077 11546 23458 23469 42262 42262 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.2974548339844 2 497.297645 992.580737 0.14781 7.3504E-05 -0.0061068 -3.0369E-06 0.1417 7.0467E-05 497.2975495898598 64.569 0.6013 67.924 67.812 68.413 3.3557 100 52 3 0 0 0 0.82752 2 15335 15335;15409 8.5933 0.68312 1 220540 37078 11546 23458 23469 42263;42264 42263 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.2979736328125 2 497.297645 992.580737 0.1418 7.0516E-05 -0.019172 -9.5343E-06 0.12263 6.0982E-05 497.29757494802095 65.075 0.4193 68.431 68.352 68.771 3.3557 43 27 2 0 0 0 0.82752 3 15498 15498;15526;15542 8.5933 0.68312 1 99174 37079 11546 23458 23469 42265;42266;42267 42265 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.2976989746094 2 497.297645 992.580737 0.18629 9.264E-05 -0.15726 -7.8204E-05 0.029028 1.4436E-05 497.297501287867 64.695 1.7443 67.951 67.398 69.142 3.2556 186 127 2 0 0 0 0.82752 4 15408 15408;15448;15534;15621 8.5933 0.68312 1 261150 37080 11546 23458 23469 42268;42269;42270;42271 42268 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 497.2973327636719 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 64.605 1 67.779 67.279 68.279 3.1741 0 0 0 0.39819 1 15462 15462 8.5933 0.68312 1 37081 11546 23458 23469 42272 42272 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 497.2978210449219 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 64.735 1 67.915 67.415 68.415 3.1795 0 0 0 0.39819 1 15502 15502 8.5933 0.68312 1 37082 11546 23458 23469 42273 42273 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 497.2973937988281 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 64.987 1 68.167 67.667 68.667 3.1795 0 0 0 0.39819 1 15579 15579 8.5933 0.68312 1 37083 11546 23458 23469 42274 42274 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 497.2975769042969 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 65.116 1 68.296 67.796 68.796 3.1795 0 0 0 0.39819 1 15618 15618 8.5933 0.68312 1 37084 11546 23458 23469 42275 42275 0.0841495841075357 RLYKFPVA 8 Unmodified _RLYKFPVA_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 497.29754638671875 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 65.431 1 68.61 68.11 69.11 3.1795 0 0 0 0.38547 1 15714 15714 13.508 0.97634 1 37085 11546 23458 23469 42276 42276 0.0841495841075357 RLYLKKRKK 9 Unmodified _RLYLKKRKK_ 0 0 0 AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 616.9187622070312 2 616.919324 1231.8241 0.42326 0.00026112 -0.75284 -0.00046444 -0.32957 -0.00020332 616.9184490139281 108.12 0.49741 111.75 111.43 111.93 3.6313 91 41 4 0 0 0 0.48643 1 26131 26131 2.0598 0.40713 1 3882900 37086 30 23459 23470 42277 42277 0.21745622855632973 RLYLKKRKK 9 Unmodified _RLYLKKRKK_ 0 0 0 AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 616.919324 1231.8241 0.63461 0.0003915 -1.2937 -0.00079813 -0.65912 -0.00040663 616.9182504654672 108.01 0.25 111.54 111.36 111.61 3.5333 -0.21129 -0.00048389 NaN 2.0598 54 29 3 NaN NaN NaN NaN 0 NaN NaN 0 5067100 37087 30 23459 23470 0.21745622855632973 RLYLKKRKK 9 Unmodified _RLYLKKRKK_ 0 0 0 AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 616.919324 1231.8241 0.51108 0.00031529 0.41486 0.00025594 0.92594 0.00057123 616.9188522313252 108.51 0.087807 112.05 111.96 112.05 3.5382 0.293 0.0016242 NaN 2.0598 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2346400 37088 30 23459 23470 0.21745622855632973 RLYLKKRKK 9 Unmodified _RLYLKKRKK_ 0 0 0 AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 616.919324 1231.8241 0.49155 0.00030325 -1.0469 -0.00064585 -0.55534 -0.0003426 616.9183499408557 107.87 0.20317 111.55 111.39 111.59 3.6783 -0.20347 -0.00017934 NaN 2.0598 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4602400 37089 30 23459 23470 0.21745622855632973 RLYLKKRKK 9 Unmodified _RLYLKKRKK_ 0 0 0 AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense AluJb_dup12250|chr2:9507712-9508006:-|1.0946046934659066|0.1815409008054189|2.59|151.0|14|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 616.919324 1231.8241 0.5774 0.00035621 -1.0737 -0.0006624 -0.49632 -0.00030619 616.9183344680832 108.06 0.080879 111.74 111.67 111.75 3.6813 -0.018031 -0.00021244 NaN 2.0598 24 7 4 NaN NaN NaN NaN 0 NaN NaN 0 5684200 37090 30 23459 23470 0.21745622855632973 RLYPEGLAQL 10 Unmodified _RLYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN47_class_I_Rep_1 2 580.3267822265625 2 580.327131 1158.63971 0.39493 0.00022919 -0.31249 -0.00018135 0.082439 4.7842E-05 580.3269159979005 59.105 0.61616 62.522 62.176 62.792 3.4171 72 42 2 0 0 0 0.48801 2 13734 13643;13734 12.873 2.0731 1 126760 37091 3845 23460 23471 42278;42279 42279 0.0667338991440829 RLYPEGLAQL 10 Unmodified _RLYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN47_class_I_Rep_2 3 580.3280639648438 2 580.327131 1158.63971 0.50873 0.00029523 -0.31171 -0.00018089 0.19703 0.00011434 580.3268982326931 59.266 0.6705 62.539 62.389 63.059 3.2731 72 47 2 0 0 0 0.31225 6 13801 13756;13795;13801;13835;13840;13864 29.437 15.032 1 147990 37092 3845 23460 23471 42280;42281;42282;42283;42284;42285 42282 0.0667338991440829 RLYPEGLAQL 10 Unmodified _RLYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN47_class_I_Rep_3 4 580.3277587890625 2 580.327131 1158.63971 0.35571 0.00020643 0.078506 4.5559E-05 0.43422 0.00025199 580.3271584636132 59.47 0.49017 62.635 62.383 62.874 3.1651 54 34 2 0 0 0 0.43841 5 13924 13837;13866;13882;13906;13924 16.566 7.8554 1 107390 37093 3845 23460 23471 42286;42287;42288;42289;42290 42290 0.0667338991440829 RLYQGINQL 9 Unmodified _RLYQGINQL_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS UPN47_class_I_Rep_1 2 552.8123168945312 2 552.811648 1103.60874 0.15134 8.3664E-05 0.25736 0.00014227 0.40871 0.00022594 552.8117256919736 45.828 0.63336 49.528 49.412 50.045 3.6999 76 39 3 0 0 0 0.15122 4 9641 9641;9685;9725;9780 25.399 10.978 1 123290 37094 1405 23461 23472 42291;42292;42293;42294 42291 0.061082366001983246 RLYQGINQL 9 Unmodified _RLYQGINQL_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS UPN47_class_I_Rep_2 3 552.8115844726562 2 552.811648 1103.60874 0.26269 0.00014522 -0.13898 -7.683E-05 0.12371 6.8387E-05 552.8115566539574 46.391 0.64154 49.743 49.454 50.096 3.3515 77 45 2 0 0 0 0.061943 5 9843 9799;9843;9882;9913;9928 43.858 25.712 1 140840 37095 1405 23461 23472 42295;42296;42297;42298;42299 42296 0.061082366001983246 RLYQGINQL 9 Unmodified _RLYQGINQL_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS UPN47_class_I_Rep_3 4 552.8118286132812 2 552.811648 1103.60874 0.29476 0.00016295 -0.1701 -9.4034E-05 0.12466 6.8912E-05 552.811688547714 46.457 0.52871 49.701 49.478 50.006 3.2439 62 34 2 0 0 0 0.097406 4 9998 9909;9915;9958;9998 34.402 12.865 1 124820 37096 1405 23461 23472 42300;42301;42302;42303 42303 0.061082366001983246 RLYRKQQK 8 Unmodified _RLYRKQQK_ 0 0 0 AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.340576171875 2 560.340907 1118.66726 0.63482 0.00035571 -1.1884 -0.00066588 -0.55354 -0.00031017 560.3402141872834 94.681 0.31493 98.153 98.029 98.344 3.472 62 43 2 0 0 0 0.82752 1 23344 23344 0.69038 0.088878 1 77402 37097 6 23462 23473 42304 42304 0.11267337965318802 RLYRKQQK 8 Unmodified _RLYRKQQK_ 0 0 0 AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 560.3401489257812 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 98.278 1 101.77 101.27 102.27 3.4897 0 0 0 0.40746 1 24102 24102 0.69038 0.088878 1 37098 6 23462 23473 42305 42305 0.11267337965318802 RLYRKQQK 8 Unmodified _RLYRKQQK_ 0 0 0 AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 560.3419189453125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 95.17 1 98.579 98.079 99.079 3.4095 0 0 0 0.40746 1 23666 23666 0.69038 0.088878 1 37099 6 23462 23473 42306 42306 0.11267337965318802 RLYRSHPRE 9 Unmodified _RLYRSHPRE_ 0 0 0 REV__nc|ENSG00000142731|O00444-3|PLK4 REV__nc|ENSG00000142731|O00444-3|PLK4 MSMS UPN46_class_I_Rep_3 1 607.33251953125 2 607.33107 1212.64759 NaN NaN NaN NaN NaN NaN NaN 41.014 1 41.014 40.514 41.514 0 0 0 0 0.4007 1 8005 8005 0.52476 0 1 + 37100 19415 23463 23474 42307 42307 0.04976961954548642 RLYYYWERDYR 11 Unmodified _RLYYYWERDYR_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MSMS UPN46_class_I_Rep_3 1 561.6080322265625 3 561.607318 1681.80012 NaN NaN NaN NaN NaN NaN NaN 24.588 1 24.588 24.088 25.088 0 0 0 0 0.38417 1 3252 3252 0.094841 0.094841 1 37101 2589 23464 23475 42308 42308 -0.013503071593731875 RMEHFPGW 8 Unmodified _RMEHFPGW_ 0 0 0 L1MB1_dup2302|chr7:5708031-5708420:-|1.05237688339488|0.0147859587540259|6.15|151.0|12|3|sense L1MB1_dup2302|chr7:5708031-5708420:-|1.05237688339488|0.0147859587540259|6.15|151.0|12|3|sense L1MB1_dup2302|chr7:5708031-5708420:-|1.05237688339488|0.0147859587540259|6.15|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 530.2452392578125 2 530.245086 1058.47562 NaN NaN NaN NaN NaN NaN NaN 116.99 1 120.48 119.98 120.98 3.4891 0 0 0 0.40738 1 28578 28578 0.79363 0 1 37102 10168 23465 23476 42309 42309 -0.05127906057305154 RMEKQTNKQ 9 Unmodified _RMEKQTNKQ_ 0 0 0 HAL1_dup19016|chr15:49936193-49937032:-|1.593637744048156|0.0071605644552293|7.8|151.0|18|2|sense HAL1_dup19016|chr15:49936193-49937032:-|1.593637744048156|0.0071605644552293|7.8|151.0|18|2|sense HAL1_dup19016|chr15:49936193-49937032:-|1.593637744048156|0.0071605644552293|7.8|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.303955078125 2 581.803497 1161.59244 0.48025 0.00027941 -0.49156 -0.00028599 -0.011311 -6.5809E-06 582.3038237897975 101.65 0.067116 105.38 105.36 105.43 3.7252 11 9 2 0 0 0 0.47493 1 24113 24113 3.2813 0 1 111690 37103 7846 23466 23477 42310 42310 0.01810787371778133 RMETCCPCCCC 11 Unmodified _RMETCCPCCCC_ 0 0 0 ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF ENST00000599649.5_1_19:52149845-52150035:-|nuORF MSMS UPN46_class_I_Rep_3 1 626.1829833984375 2 626.182428 1250.3503 NaN NaN NaN NaN NaN NaN NaN 46.408 1 46.408 45.908 46.908 0 0 0 0 0.38417 1 9513 9513 0 0 1 37104 7657 23467 23478 42311 42311 -0.26485852950031585 RMFHLLLR 8 Unmodified _RMFHLLLR_ 0 0 0 L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|52|2|anti-sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|52|2|anti-sense L1MA4_dup2517|chr4:88715845-88716944:-|2.881236963787949|0.3711080452021698|2.96|151.0|52|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 543.3238525390625 2 543.323671 1084.63279 -0.011254 -6.1146E-06 1.2478 0.00067798 1.2366 0.00067186 543.324255335063 34.333 0.24104 38.019 37.861 38.102 3.6859 30 17 2 0 0 0 0.82752 1 6147 6147 2.3027 0 1 88034 37105 9669 23468 23479 42312 42312 0.09385798552875713 RMFHVFMRR 9 Unmodified _RMFHVFMRR_ 0 0 0 L1M2b_dup44|chr3:138645283-138646488:-|6.510637905950183|0.1315662214383025|5.63|151.0|79|3|anti-sense L1M2b_dup44|chr3:138645283-138646488:-|6.510637905950183|0.1315662214383025|5.63|151.0|79|3|anti-sense L1M2b_dup44|chr3:138645283-138646488:-|6.510637905950183|0.1315662214383025|5.63|151.0|79|3|anti-sense MSMS UPN48_class_I_Rep_3 7 640.3372192382812 2 640.336787 1278.65902 NaN NaN NaN NaN NaN NaN NaN 45.663 1 49.3 48.8 49.8 3.6369 0 0 0 0.4007 1 8769 8769 0.52476 0 1 37106 8742 23469 23480 42313 42313 0.03083744452692372 RMFHVYFK 8 Unmodified _RMFHVYFK_ 0 0 0 L1MB5_dup3549|chr8:73729689-73730444:-|1.131320366539487|0.0156406531099129|6.18|150.0|49|2|anti-sense L1MB5_dup3549|chr8:73729689-73730444:-|1.131320366539487|0.0156406531099129|6.18|150.0|49|2|anti-sense L1MB5_dup3549|chr8:73729689-73730444:-|1.131320366539487|0.0156406531099129|6.18|150.0|49|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2963256835938 2 564.294579 1126.57461 NaN NaN NaN NaN NaN NaN NaN 29.205 1 32.755 32.255 33.255 3.5499 0 0 0 0.40746 1 4024 4024 0.69038 0 1 37107 10613 23470 23481 42314 42314 0.016381169075884827 RMFPTTTVM 9 Unmodified _RMFPTTTVM_ 0 0 0 ENST00000373696.7_1_X:70823497-70824427:+|nuORF ENST00000373696.7_1_X:70823497-70824427:+|nuORF ENST00000373696.7_1_X:70823497-70824427:+|nuORF MSMS UPN47_class_I_Rep_1 2 542.2716674804688 2 542.269912 1082.52527 NaN NaN NaN NaN NaN NaN NaN 88.402 1 92.058 91.558 92.558 3.6563 0 0 0 0.3377 1 22107 22107 8.7454 2.5396 1 37108 6420 23471 23482 42315 42315 -0.01268959163553518 RMFQRHMR 8 Unmodified _RMFQRHMR_ 0 0 0 REV__ENSG00000171522|ENST00000302472|PTGER4 REV__ENSG00000171522|ENST00000302472|PTGER4 MSMS UPN47_class_I_Rep_2 3 581.2623901367188 2 581.297662 1160.58077 NaN NaN NaN NaN NaN NaN NaN 23.808 1 27.273 26.773 27.773 3.4655 0 0 0 0.40746 1 3053 3053 0.69038 0.16561 1 + 37109 20412 23472 23483 42316 42316 0.006903118674472353 RMFRRIYRHL 10 Unmodified _RMFRRIYRHL_ 0 0 0 nc|ENSG00000289690|Q7L2J0-2|MEPCE;ENSG00000146834|ENST00000310512|MEPCE nc|ENSG00000289690|Q7L2J0-2|MEPCE nc|ENSG00000289690|Q7L2J0-2|MEPCE MSMS UPN47_class_I_Rep_3 4 482.79547119140625 3 483.278702 1446.81428 NaN NaN NaN NaN NaN NaN NaN 115 1 118.48 117.98 118.98 3.4802 0 0 0 0.53105 1 28260 28260 0.15932 0.064481 1 37110 3449 23473 23484 42317 42317 0.10874111578618795 RMGWLPLLLL 10 Unmodified _RMGWLPLLLL_ 0 0 0 ENSG00000173531|ENST00000449682|MST1 ENSG00000173531|ENST00000449682|MST1 ENSG00000173531|ENST00000449682|MST1 MSMS UPN46_class_I_Rep_3 1 606.3706665039062 2 606.370287 1210.72602 NaN NaN NaN NaN NaN NaN NaN 88.113 1 88.113 87.613 88.613 0 0 0 0 0.53105 1 21145 21145 0 0 1 37111 4631 23474 23485 42318 42318 0.12908678215467262 RMGWLPLLLL 10 Unmodified _RMGWLPLLLL_ 0 0 0 ENSG00000173531|ENST00000449682|MST1 ENSG00000173531|ENST00000449682|MST1 ENSG00000173531|ENST00000449682|MST1 MULTI-SECPEP UPN46_class_I_Rep_3 1 606.370361328125 2 606.370287 1210.72602 0.60603 0.00036748 0.25013 0.00015167 0.85616 0.00051915 606.3705651069929 88.595 0.04847 88.595 88.551 88.599 0 6 5 2 0 0 0 0.84575 1 21276 21276 0 0 1 140330 37112 4631 23474 23485 42319 42319 0.12908678215467262 RMHRRFPK 8 Unmodified _RMHRRFPK_ 0 0 0 REV__chrX:119633485-119637027|114|31.4|0.6|5.72|-|1|None,SEPTIN6|1 REV__chrX:119633485-119637027|114|31.4|0.6|5.72|-|1|None,SEPTIN6|1 MSMS UPN47_class_I_Rep_3 4 564.2374267578125 2 564.321994 1126.62944 NaN NaN NaN NaN NaN NaN NaN 112.07 1 115.59 115.09 116.09 3.5207 0 0 0 0.40746 1 27520 27520 0.69038 0 1 + 37113 17460 23475 23486 42320 42320 0.07118548498851851 RMIIYLRR 8 Unmodified _RMIIYLRR_ 0 0 0 REV__nc|ENSG00000198373|O00308-3|WWP2 REV__nc|ENSG00000198373|O00308-3|WWP2 MSMS UPN48_class_I_Rep_1 5 560.8427734375 2 560.842228 1119.6699 NaN NaN NaN NaN NaN NaN NaN 79.838 1 83.387 82.887 83.887 3.5487 0 0 0 0.40746 1 19071 19071 0.69038 0 1 + 37114 21122 23476 23487 42321 42321 0.11485470098614314 RMIIYLRR 8 Unmodified _RMIIYLRR_ 0 0 0 REV__nc|ENSG00000198373|O00308-3|WWP2 REV__nc|ENSG00000198373|O00308-3|WWP2 MSMS UPN48_class_I_Rep_2 6 560.8419799804688 2 560.842228 1119.6699 NaN NaN NaN NaN NaN NaN NaN 79.657 1 83.29 82.79 83.79 3.6331 0 0 0 0.40746 1 18932 18932 0.69038 0 1 + 37115 21122 23476 23487 42322 42322 0.11485470098614314 RMIKRMLA 8 Unmodified _RMIKRMLA_ 0 0 0 REV__MER65-int_dup270|chr4:139163110-139163631:+|2.587697784645832|0.015349445896452|7.4|151.0|11|2|sense REV__MER65-int_dup270|chr4:139163110-139163631:+|2.587697784645832|0.015349445896452|7.4|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 509.803466796875 2 509.804257 1017.59396 0.27885 0.00014216 -1.0366 -0.00052849 -0.75779 -0.00038633 509.80354049970515 75.631 0.44061 78.888 78.849 79.29 3.2573 55 40 2 0 0 0 0.82752 1 18801 18801 0.79363 0 1 63568 + 37116 31521 23477 23488 42323 42323 0.08586749926826087 RMIKTKSFL 9 Unmodified _RMIKTKSFL_ 0 0 0 REV__Charlie1_dup744|chr6:42036706-42036927:+|1.0687801297763129|0.0224851646672649|5.57|151.0|11|2|anti-sense REV__Charlie1_dup744|chr6:42036706-42036927:+|1.0687801297763129|0.0224851646672649|5.57|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_2 3 562.3348388671875 2 562.336444 1122.65834 NaN NaN NaN NaN NaN NaN NaN 108.86 1 112.39 111.89 112.89 3.5333 0 0 0 0.2408 1 26464 26464 13.906 4.5229 1 + 37117 17275 23478 23489 42324 42324 0.10191228284634235 RMIKTKSFL 9 Unmodified _RMIKTKSFL_ 0 0 0 REV__Charlie1_dup744|chr6:42036706-42036927:+|1.0687801297763129|0.0224851646672649|5.57|151.0|11|2|anti-sense REV__Charlie1_dup744|chr6:42036706-42036927:+|1.0687801297763129|0.0224851646672649|5.57|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_1 5 562.3355102539062 2 562.336444 1122.65834 NaN NaN NaN NaN NaN NaN NaN 109.39 1 113.02 112.52 113.52 3.6321 0 0 0 0.37476 1 26563 26563 6.7232 0 1 + 37118 17275 23478 23489 42325 42325 0.10191228284634235 RMIKTKSFL 9 Unmodified _RMIKTKSFL_ 0 0 0 REV__Charlie1_dup744|chr6:42036706-42036927:+|1.0687801297763129|0.0224851646672649|5.57|151.0|11|2|anti-sense REV__Charlie1_dup744|chr6:42036706-42036927:+|1.0687801297763129|0.0224851646672649|5.57|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_3 7 562.3347778320312 2 562.336444 1122.65834 NaN NaN NaN NaN NaN NaN NaN 108.71 1 112.38 111.88 112.88 3.6751 0 0 0 0.32573 1 25753 25753 9.3831 0 1 + 37119 17275 23478 23489 42326 42326 0.10191228284634235 RMKGKDID 8 Unmodified _RMKGKDID_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|12|1|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|12|1|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 481.7887878417969 2 481.758027 961.5015 NaN NaN NaN NaN NaN NaN NaN 111.27 1 114.84 114.34 115.34 3.572 0 0 0 0.40746 1 27440 27440 0.69038 0 1 37120 11308 23479 23490 42327 42327 0.019209433942933174 RMKGPPLAL 9 Unmodified _RMKGPPLAL_ 0 0 0 REV__ENST00000245414.8_1_5:131819408-131819492:-|nuORF REV__ENST00000245414.8_1_5:131819408-131819492:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 491.7962646484375 2 491.796955 981.579357 0.23157 0.00011389 -1.6976 -0.00083488 -1.466 -0.000721 491.79584412537275 63.252 0.2366 63.252 63.096 63.333 0 30 24 2 0 0 0 0.46434 1 14207 14207 4.3292 1.7518 1 115910 + 37121 21514 23480 23491 42328 42328 0.08783001050335315 RMKGPPLAL 9 Unmodified _RMKGPPLAL_ 0 0 0 REV__ENST00000245414.8_1_5:131819408-131819492:-|nuORF REV__ENST00000245414.8_1_5:131819408-131819492:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 491.796955 981.579357 0.23157 0.00011389 -1.6976 -0.00083488 -1.466 -0.000721 491.79584412537275 63.252 0.2366 63.252 63.096 63.333 0 0.13549 0.00023947 NaN 4.3292 30 24 2 NaN NaN NaN NaN 0 NaN NaN 0 115910 + 37122 21514 23480 23491 0.08783001050335315 RMKHILSG 8 Unmodified _RMKHILSG_ 0 0 0 HAL1_dup14881|chr10:87279351-87280026:+|1.5118202274084864|0.0225645706895776|6.07|151.0|13|2|sense;HAL1_dup14812|chr10:79757143-79757818:+|1.918667922584052|0.106819111789014|4.17|151.0|13|2|sense HAL1_dup14881|chr10:87279351-87280026:+|1.5118202274084864|0.0225645706895776|6.07|151.0|13|2|sense HAL1_dup14881|chr10:87279351-87280026:+|1.5118202274084864|0.0225645706895776|6.07|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 471.2712097167969 2 471.271104 940.527655 NaN NaN NaN NaN NaN NaN NaN 115 1 115 114.5 115.5 0 0 0 0 0.40746 1 28442 28442 0.69038 0 1 37123 7805 23481 23492 42329 42329 0.0550125735645679 RMKHLKTLP 9 Unmodified _RMKHLKTLP_ 0 0 0 ENSG00000138075|ENST00000405322|ABCG5 ENSG00000138075|ENST00000405322|ABCG5 ENSG00000138075|ENST00000405322|ABCG5 MSMS UPN48_class_I_Rep_2 6 562.3441162109375 2 562.342061 1122.66957 NaN NaN NaN NaN NaN NaN NaN 81.298 1 84.955 84.455 85.455 3.6567 0 0 0 0.4007 1 19294 19294 0.52476 0 1 37124 3061 23482 23493 42330 42330 0.11314050378791762 RMKKIWGI 8 Unmodified _RMKKIWGI_ 0 0 0 REV__L1PA7_dup11017|chr13:72947639-72948239:+|1.0443709482894736|0.0099046340509578|6.72|151.0|2|1|sense REV__L1PA7_dup11017|chr13:72947639-72948239:+|1.0443709482894736|0.0099046340509578|6.72|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 516.79833984375 2 516.312772 1030.61099 NaN NaN NaN NaN NaN NaN NaN 111.19 1 114.72 114.22 115.22 3.5271 0 0 0 0.40738 1 27063 27063 0.79363 0.10326 1 + 37125 29990 23483 23494 42331 42331 0.09690993804292702 RMKKSYYI 8 Unmodified _RMKKSYYI_ 0 0 0 REV__ENST00000380629.6_1_8:26270343-26270526:+|nuORF REV__ENST00000380629.6_1_8:26270343-26270526:+|nuORF MSMS UPN48_class_I_Rep_2 6 545.2461547851562 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 19.34 1 22.99 22.49 23.49 3.6497 0 0 0 0.40604 1 1458 1458 2.5775 0 1 + 37126 22050 23484 23495 42332 42332 0.04454679842137921 RMKKSYYI 8 Unmodified _RMKKSYYI_ 0 0 0 REV__ENST00000380629.6_1_8:26270343-26270526:+|nuORF REV__ENST00000380629.6_1_8:26270343-26270526:+|nuORF MSMS UPN48_class_I_Rep_3 7 545.2479858398438 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 19.682 1 23.304 22.804 23.804 3.6215 0 0 0 0.40604 1 1534 1534 2.5775 0 1 + 37127 22050 23484 23495 42333 42333 0.04454679842137921 RMKMWIWPRYW 11 Unmodified _RMKMWIWPRYW_ 0 0 0 ENST00000446197.7_1_14:24584891-24586136:+|nuORF;ENST00000560901.5_1_14:24584114-24586206:+|nuORF;ENST00000559382.5_2_14:24584130-24586206:+|nuORF ENST00000446197.7_1_14:24584891-24586136:+|nuORF ENST00000446197.7_1_14:24584891-24586136:+|nuORF MSMS UPN46_class_I_Rep_3 1 551.617431640625 3 551.616215 1651.82681 NaN NaN NaN NaN NaN NaN NaN 46.493 1 46.493 45.993 46.993 0 0 0 0 0.38417 1 9537 9537 0.08335 0.010087 1 37128 6790 23485 23496 42334 42334 0.02697386926638501 RMKPSPLTP 9 Unmodified _RMKPSPLTP_ 0 0 0 nc|ENSG00000176909|Q6ZN01-3|MAMSTR;nc|ENSG00000176909|Q6ZN01-2|MAMSTR;ENSG00000176909|ENST00000318083|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR MSMS UPN47_class_I_Rep_2 3 513.7891845703125 2 513.791869 1025.56919 NaN NaN NaN NaN NaN NaN NaN 35.376 1 38.801 38.301 39.301 3.4253 0 0 0 0.39598 1 6514 6514 1.6526 0.85899 1 37129 4771 23486 23497 42335 42335 0.05742393325112971 RMKYWFWR 8 Unmodified _RMKYWFWR_ 0 0 0 REV__LTR87_dup51|chr2:55327283-55327664:-|1.1075880458288034|0.1116880157222898|3.31|151.0|12|2|sense REV__LTR87_dup51|chr2:55327283-55327664:-|1.1075880458288034|0.1116880157222898|3.31|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 636.8241577148438 2 636.826578 1271.6386 NaN NaN NaN NaN NaN NaN NaN 70.434 1 73.969 73.469 74.469 3.5359 0 0 0 0.40746 1 16383 16383 0.69038 0.16561 1 + 37130 31034 23487 23498 42336 42336 0.013648970645135705 RMLDSVEKL 9 Unmodified _RMLDSVEKL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_1 2 545.7997436523438 2 545.799891 1089.58523 0.05494 2.9986E-05 -0.23793 -0.00012986 -0.18299 -9.9878E-05 545.7996856824345 41.806 0.65885 45.485 45.28 45.938 3.6792 66 44 3 0 0 0 0.45441 2 8404 8404;8543 4.897 1.6157 1 90437 37131 2418 23488 23499 42337;42338 42337 0.044020547713671476 RMLDSVEKL 9 Unmodified _RMLDSVEKL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_2 3 545.799560546875 2 545.799891 1089.58523 0.057034 3.1129E-05 -0.22153 -0.00012091 -0.16449 -8.9781E-05 545.7997655180776 42.334 0.64998 45.696 45.409 46.059 3.3611 65 49 2 0 0 0 0.36258 3 8621 8584;8621;8663 10.151 1.995 1 140030 37132 2418 23488 23499 42339;42340;42341 42340 0.044020547713671476 RMLDSVEKL 9 Unmodified _RMLDSVEKL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_3 4 545.8001708984375 2 545.799891 1089.58523 0.080008 4.3668E-05 0.04051 2.211E-05 0.12052 6.5778E-05 545.7999316213803 42.499 0.50085 45.739 45.535 46.036 3.2394 49 32 2 0 0 0 0.45441 3 8718 8675;8718;8770 4.897 1.6157 1 82474 37133 2418 23488 23499 42342;42343;42344 42343 0.044020547713671476 RMLDSVEKL 9 Unmodified _RMLDSVEKL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 545.799891 1089.58523 0.05494 2.9986E-05 -0.23793 -0.00012986 -0.18299 -9.9878E-05 545.7996856824345 41.806 0.65885 45.485 45.28 45.938 3.6792 -0.15461 -7.2641E-05 NaN 10.151 66 44 3 NaN NaN NaN NaN 0 NaN NaN 0 90437 37134 2418 23488 23499 0.044020547713671476 RMLDSVEKL 9 Unmodified _RMLDSVEKL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 545.799891 1089.58523 0.057034 3.1129E-05 -0.22153 -0.00012091 -0.16449 -8.9781E-05 545.7997655180776 42.334 0.64998 45.696 45.409 46.059 3.3611 0.055764 -5.4731E-05 NaN 10.151 65 49 2 NaN NaN NaN NaN 0 NaN NaN 0 140030 37135 2418 23488 23499 0.044020547713671476 RMLDSVEKL 9 Unmodified _RMLDSVEKL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 545.799891 1089.58523 0.080008 4.3668E-05 0.04051 2.211E-05 0.12052 6.5778E-05 545.7999316213803 42.499 0.50085 45.739 45.535 46.036 3.2394 0.098843 0.00023131 NaN 10.151 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 82474 37136 2418 23488 23499 0.044020547713671476 RMLEHWKKR 9 Unmodified _RMLEHWKKR_ 0 0 0 L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 641.8588256835938 2 642.361316 1282.70808 0.57893 0.00037188 -0.089188 -5.7291E-05 0.48974 0.00031459 642.3615067999413 106.36 0.41211 110.07 110.01 110.42 3.7088 97 59 2 0 0 0 0.12281 1 26099 26099 4.3292 0.73274 1 355470 37137 13059 23489 23500 42345 42345 0.07803356013278062 RMLEHWKKR 9 Unmodified _RMLEHWKKR_ 0 0 0 L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 642.3619995117188 2 642.361316 1282.70808 NaN NaN NaN NaN NaN NaN NaN 106.44 1 109.97 109.47 110.47 3.5345 0 0 0 0.39518 1 25783 25783 1.8442 0.19162 1 37138 13059 23489 23500 42346 42346 0.07803356013278062 RMLEHWKKR 9 Unmodified _RMLEHWKKR_ 0 0 0 L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 642.362548828125 2 642.361316 1282.70808 0.51476 0.00033066 -0.42645 -0.00027393 0.088306 5.6725E-05 642.3615960194662 106.56 0.27618 110.1 110.03 110.31 3.5367 53 42 2 0 0 0 0.48846 1 26046 26046 1.8442 0.19162 1 216340 37139 13059 23489 23500 42347 42347 0.07803356013278062 RMLEHWKKR 9 Unmodified _RMLEHWKKR_ 0 0 0 L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense L1MEc_dup17652|chr20:32388503-32388850:-|1.2691982649622062|0.0051893309123301|7.93|149.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 641.8587646484375 2 642.361316 1282.70808 0.51476 0.00033066 -0.42645 -0.00027393 0.088306 5.6725E-05 642.3615960194662 106.56 0.27618 110.1 110.03 110.31 3.5367 53 42 2 0 0 0 0.12281 1 26037 26037 4.3292 1.334 1 216340 37140 13059 23489 23500 42348 42348 0.07803356013278062 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-SECPEP UPN47_class_I_Rep_3 4 489.27032470703125 2 489.271104 976.527655 -0.35483 -0.00017361 0.053758 2.6302E-05 -0.30107 -0.0001473 489.27087885094926 35.921 0.7969 39.176 38.948 39.745 3.2547 64 52 2 0 0 0 0.11959 1 6831 6831 7.9102 2.1783 1 50849 37141 2184 23490 23501 42349 42349 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MATCH UPN47_class_I_Rep_1 2 2 489.271104 976.527655 -0.28126 -0.00013761 0.061342 3.0013E-05 -0.21992 -0.0001076 489.27099489651 35.335 0.57063 39.011 38.771 39.342 3.6762 -0.10972 8.1373E-05 NaN 7.9102 52 39 2 NaN NaN NaN NaN 0 NaN NaN 0 88448 37142 2184 23490 23501 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 489.271104 976.527655 -0.1223 -5.9838E-05 -0.19689 -9.6333E-05 -0.31919 -0.00015617 489.270837431201 35.764 0.57198 39.175 38.902 39.474 3.4114 0.054592 -0.00017132 NaN 7.9102 50 39 2 NaN NaN NaN NaN 0 NaN NaN 0 68307 37143 2184 23490 23501 0.03845257356431375 RMLRPIFV 8 Unmodified _RMLRPIFV_ 0 0 0 REV__L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|123|1|anti-sense REV__L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|123|1|anti-sense MSMS UPN48_class_I_Rep_3 7 516.3140258789062 2 516.312772 1030.61099 NaN NaN NaN NaN NaN NaN NaN 92.771 1 96.649 96.149 97.149 3.8782 0 0 0 0.40746 1 21990 21990 0.69038 0 1 + 37144 27833 23491 23502 42350 42350 0.09690993804292702 RMMVKQTAVFR 11 Unmodified _RMMVKQTAVFR_ 0 0 0 ENST00000519738.5_1_8:37411542-37411674:-|nuORF ENST00000519738.5_1_8:37411542-37411674:-|nuORF ENST00000519738.5_1_8:37411542-37411674:-|nuORF MSMS UPN48_class_I_Rep_1 5 456.2522888183594 3 456.253053 1365.73733 NaN NaN NaN NaN NaN NaN NaN 92.451 1 96.075 95.575 96.575 3.624 0 0 0 0.38417 1 22217 22217 2.6312 1.3016 1 37145 7223 23492 23503 42351 42351 0.06909132247255911 RMNHRRQN 8 Unmodified _RMNHRRQN_ 0 0 0 REV__LTR33A_dup1934|chr20:50090026-50090192:+|1.1014150289574145|0.432917073777986|1.35|151.0|6|1|anti-sense REV__LTR33A_dup1934|chr20:50090026-50090192:+|1.1014150289574145|0.432917073777986|1.35|151.0|6|1|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2884521484375 2 556.28614 1110.55773 NaN NaN NaN NaN NaN NaN NaN 102.86 1 106.36 105.86 106.86 3.5057 0 0 0 0.40625 1 25263 25263 2.3027 0 1 + 37146 30904 23493 23504 42352 42352 0.006870090743632318 RMNKIAHI 8 Unmodified _RMNKIAHI_ 0 0 0 REV__ENSG00000175175|ENST00000308249|PPM1E REV__ENSG00000175175|ENST00000308249|PPM1E MSMS UPN48_class_I_Rep_2 6 491.79571533203125 2 491.784379 981.554204 NaN NaN NaN NaN NaN NaN NaN 45.769 1 49.527 49.027 50.027 3.7579 0 0 0 0.40404 1 8870 8870 5.2307 0.47466 1 + 37147 20545 23494 23505 42353 42353 0.06268946247757867 RMNKYFKK 8 Unmodified _RMNKYFKK_ 0 0 0 AluJb_dup78380|chr11:66620977-66621169:-|2.1637318172637023|0.4049478049829741|2.42|151.0|8|3|sense AluJb_dup78380|chr11:66620977-66621169:-|2.1637318172637023|0.4049478049829741|2.42|151.0|8|3|sense AluJb_dup78380|chr11:66620977-66621169:-|2.1637318172637023|0.4049478049829741|2.42|151.0|8|3|sense MSMS UPN48_class_I_Rep_1 5 557.8148193359375 2 557.813136 1113.61172 NaN NaN NaN NaN NaN NaN NaN 90.606 1 94.232 93.732 94.732 3.626 0 0 0 0.40746 1 21776 21776 0.69038 0 1 37148 69 23495 23506 42354 42354 0.059457884533230754 RMPLPRAR 8 Unmodified _RMPLPRAR_ 0 0 0 REV__ENST00000486738.5_1_X:153607718-153607802:+|nuORF REV__ENST00000486738.5_1_X:153607718-153607802:+|nuORF MSMS UPN48_class_I_Rep_1 5 498.7956848144531 2 498.79782 995.581088 NaN NaN NaN NaN NaN NaN NaN 26.133 1 29.7 29.2 30.2 3.5667 0 0 0 0.40625 1 3159 3159 2.3027 0 1 + 37149 22604 23496 23507 42355 42355 0.08312054858947704 RMPPHGKDHQ 10 Unmodified _RMPPHGKDHQ_ 0 0 0 REV__L1PA17_dup3641|chr12:110307533-110308383:-|1.10112589673502|0.0249890651195872|5.46|151.0|1|1|sense REV__L1PA17_dup3641|chr12:110307533-110308383:-|1.10112589673502|0.0249890651195872|5.46|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 601.7958374023438 2 601.796006 1201.57746 NaN NaN NaN NaN NaN NaN NaN 44.979 1 48.616 48.116 49.116 3.6372 0 0 0 0.53105 1 8560 8560 1.3295 0.13619 1 + 37150 29471 23497 23508 42356 42356 -0.015266597055415332 RMPPHRLIFV 10 Unmodified _RMPPHRLIFV_ 0 0 0 ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 633.3678588867188 2 633.36861 1264.72267 0.721 0.00045666 0.43617 0.00027625 1.1572 0.00073291 633.3686436609156 91.309 0.31436 91.309 91.11 91.424 0 47 27 3 0 0 0 0.56296 1 22034 22034 1.4819 0 1 542270 37151 2747 23498 23509 42357 42357 0.1008942816142735 RMPPHRLIFV 10 Unmodified _RMPPHRLIFV_ 0 0 0 ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron MULTI-MSMS UPN48_class_I_Rep_2 6 633.354248046875 2 633.36861 1264.72267 0.49561 0.00031391 0.50995 0.00032299 1.0056 0.0006369 633.3687872687763 86.456 0.41693 90.173 89.808 90.225 3.7171 100 55 3 0 0 0 0.56296 1 20547 20547 1.4819 1.1313 1 311630 37152 2747 23498 23509 42358 42358 0.1008942816142735 RMPPHRLIFV 10 Unmodified _RMPPHRLIFV_ 0 0 0 ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|3|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 633.36861 1264.72267 0.72097 0.00045664 0.51393 0.00032551 1.2349 0.00078215 633.3687812786869 90.132 0.163 90.132 90.042 90.205 0 -0.020585 3.2732E-06 NaN 1.4819 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 602770 37153 2747 23498 23509 0.1008942816142735 RMPSPLRI 8 Unmodified _RMPSPLRI_ 0 0 0 LTR28C_dup290|chr15:34262070-34263014:+|1.0649315729304478|0.0254538878652536|5.39|151.0|4|1|sense LTR28C_dup290|chr15:34262070-34263014:+|1.0649315729304478|0.0254538878652536|5.39|151.0|4|1|sense LTR28C_dup290|chr15:34262070-34263014:+|1.0649315729304478|0.0254538878652536|5.39|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 485.286376953125 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 58.445 1 61.932 61.432 62.432 3.487 0 0 0 0.40625 1 12753 12753 2.3027 0 1 37154 15612 23499 23510 42359 42359 0.07341830390521409 RMQKHMQQ 8 Unmodified _RMQKHMQQ_ 0 0 0 L1PB1_dup11987|chr18:2858936-2860244:-|1.5198360893746596|0.0137676804055303|6.79|149.0|32|3|sense L1PB1_dup11987|chr18:2858936-2860244:-|1.5198360893746596|0.0137676804055303|6.79|149.0|32|3|sense L1PB1_dup11987|chr18:2858936-2860244:-|1.5198360893746596|0.0137676804055303|6.79|149.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 543.7693481445312 2 543.768403 1085.52225 NaN NaN NaN NaN NaN NaN NaN 22.488 1 26.181 25.681 26.681 3.6933 0 0 0 0.40604 1 2622 2622 2.5775 0.27475 1 37155 15027 23500 23511 42360 42360 -0.01708789497683938 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 451.9322509765625 3 451.932309 1352.7751 0.19035 8.6027E-05 0.89322 0.00040367 1.0836 0.0004897 451.93251919037954 94.91 0.20525 94.91 94.721 94.927 0 32 21 3 0 0 0 0.5652 1 23018 23018 0.15932 0 1 291250 + 37156 26820 23501 23512 42361 42361 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 451.93280029296875 3 451.932309 1352.7751 0.19038 8.604E-05 0.62765 0.00028365 0.81803 0.0003697 451.9324920284986 93.656 0.32181 93.656 93.505 93.827 0 51 31 3 0 0 0 0.84575 1 22668 22668 0.77653 0.27058 1 388370 + 37157 26820 23501 23512 42362 42362 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 451.9322814941406 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 90.916 1 94.605 94.105 95.105 3.6899 0 0 0 0.53105 1 22703 22703 0.15932 0 1 + 37158 26820 23501 23512 42363 42363 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 451.9329833984375 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 92.255 1 95.72 95.22 96.22 3.4652 0 0 0 0.53105 1 22812 22812 0.77653 0.078866 1 + 37159 26820 23501 23512 42364 42364 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.9323425292969 3 451.932309 1352.7751 -0.16642 -7.5209E-05 0.86418 0.00039055 0.69776 0.00031534 451.93264728365926 92.183 0.31216 95.586 95.373 95.686 3.4034 58 43 2 0 0 0 0.56444 1 23021 23021 0.69767 0 1 364110 + 37160 26820 23501 23512 42365 42365 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.93231201171875 3 451.932309 1352.7751 -0.16477 -7.4463E-05 0.7276 0.00032883 0.56283 0.00025436 451.93256365083613 92.619 0.40559 96.023 95.941 96.346 3.4034 75 58 2 0 0 0 0.56273 1 23157 23157 1.9064 0.69154 1 143280 + 37161 26820 23501 23512 42366 42366 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MSMS UPN48_class_I_Rep_3 7 451.9322814941406 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 92.484 1 96.362 95.862 96.862 3.8782 0 0 0 0.53105 1 21925 21925 0.69767 0.19171 1 + 37162 26820 23501 23512 42367 42367 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 451.932309 1352.7751 0.19025 8.598E-05 0.81017 0.00036614 1.0004 0.00045212 451.9325504496379 96.068 0.10489 96.068 96.01 96.115 0 0.023451 6.2708E-05 NaN 1.9064 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 598740 + 37163 26820 23501 23512 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 451.932309 1352.7751 0.19035 8.6027E-05 0.89322 0.00040367 1.0836 0.0004897 451.93251919037954 94.91 0.20525 94.91 94.721 94.927 0 0.041663 4.6012E-05 NaN 0.15932 32 21 3 NaN NaN NaN NaN 0 NaN NaN 0 291250 + 37164 26820 23501 23512 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 451.932309 1352.7751 -0.16477 -7.4463E-05 0.7276 0.00032883 0.56283 0.00025436 451.93256365083613 92.619 0.40559 96.023 95.941 96.346 3.4034 -0.02165 -4.9235E-05 NaN 1.9064 75 58 2 NaN NaN NaN NaN 0 NaN NaN 0 143280 + 37165 26820 23501 23512 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 451.932309 1352.7751 0.177 7.9992E-05 0.60498 0.00027341 0.78198 0.0003534 451.93264965065094 92.164 0.09536 96.043 95.992 96.088 3.8782 -0.0018015 -0.00021548 NaN 1.9064 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 415330 + 37166 26820 23501 23512 0.112819665043844 RMQKLRIYVF 10 Unmodified _RMQKLRIYVF_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|20|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 451.932309 1352.7751 0.1798 8.1257E-05 0.25309 0.00011438 0.43289 0.00019564 451.9324437074729 90.963 0.02092 94.827 94.81 94.831 3.8634 -0.041663 -0.00082187 NaN 0.15932 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 120600 + 37167 26820 23501 23512 0.112819665043844 RMQQQYFY 8 Unmodified _RMQQQYFY_ 0 0 0 REV__L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|74|3|anti-sense REV__L1MB7_dup20610|chr18:35089209-35090304:+|1.1027674500542837|0.0574982446000645|4.26|151.0|74|3|anti-sense MSMS UPN47_class_I_Rep_2 3 582.2711791992188 2 582.268758 1162.52296 NaN NaN NaN NaN NaN NaN NaN 74.351 1 77.656 77.156 78.156 3.3048 0 0 0 0.40581 1 18317 18317 2.8892 0 1 + 37168 26206 23502 23513 42368 42368 -0.05179671576979672 RMQRNCRF 8 Unmodified _RMQRNCRF_ 0 0 0 L1MD2_dup3878|chr6:149329898-149330867:-|1.1242072856726404|0.0159576560177415|6.14|151.0|18|2|sense L1MD2_dup3878|chr6:149329898-149330867:-|1.1242072856726404|0.0159576560177415|6.14|151.0|18|2|sense L1MD2_dup3878|chr6:149329898-149330867:-|1.1242072856726404|0.0159576560177415|6.14|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 555.7975463867188 2 555.774019 1109.53349 NaN NaN NaN NaN NaN NaN NaN 57.877 1 61.409 60.909 61.909 3.5317 0 0 0 0.40625 1 12491 12491 2.3027 0.24298 1 37169 11997 23503 23514 42369 42369 -0.016899674035357748 RMQSVHSQIS 10 Unmodified _RMQSVHSQIS_ 0 0 0 L1PA6_dup577|chr2:63530724-63536624:+|1.3513547856132109|0.0493140872131978|4.78|151.0|232|1|anti-sense L1PA6_dup577|chr2:63530724-63536624:+|1.3513547856132109|0.0493140872131978|4.78|151.0|232|1|anti-sense L1PA6_dup577|chr2:63530724-63536624:+|1.3513547856132109|0.0493140872131978|4.78|151.0|232|1|anti-sense MSMS UPN48_class_I_Rep_1 5 586.796142578125 2 586.795672 1171.57679 NaN NaN NaN NaN NaN NaN NaN 36.91 1 40.417 39.917 40.917 3.507 0 0 0 0.53105 1 6216 6216 1.3295 0 1 37170 14671 23504 23515 42370 42370 -0.0021349914525217173 RMRKRPHK 8 Unmodified _RMRKRPHK_ 0 0 0 REV__L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|28|1|sense REV__L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|28|1|sense MSMS UPN47_class_I_Rep_2 3 554.833251953125 2 554.835269 1107.65598 NaN NaN NaN NaN NaN NaN NaN 83.507 1 86.918 86.418 87.418 3.4116 0 0 0 0.40746 1 20817 20817 0.69038 0.088878 1 + 37171 29137 23505 23516 42371 42371 0.10646237390187707 RMRRMRMK 8 Unmodified _RMRRMRMK_ 0 0 0 REV__chr19:12943629-12943834|66|179.97|0.67|8.06|+|0|CALR,None|1 REV__chr19:12943629-12943834|66|179.97|0.67|8.06|+|0|CALR,None|1 MSMS UPN48_class_I_Rep_3 7 583.074462890625 2 582.822989 1163.63143 NaN NaN NaN NaN NaN NaN NaN 30.131 1 33.846 33.346 34.346 3.7146 0 0 0 0.40746 1 4308 4308 0.69038 0.16561 1 + 37172 17441 23506 23517 42372 42372 0.05615517920796265 RMRRPSPA 8 Unmodified _RMRRPSPA_ 0 0 0 REV__ENST00000532131.1_1_1:36644121-36644906:+|nuORF REV__ENST00000532131.1_1_1:36644121-36644906:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.7844543457031 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 23.168 1 26.613 26.113 27.113 3.4447 0 0 0 0.40604 1 2874 2874 2.5775 0.27475 1 + 37173 22862 23507 23518 42373 42373 0.0430689144519647 RMSHILMRR 9 Unmodified _RMSHILMRR_ 0 0 0 L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|155|1|anti-sense L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|155|1|anti-sense L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|155|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 600.3353271484375 2 600.334244 1198.65394 0.58449 0.00035089 -0.28821 -0.00017302 0.29629 0.00017787 600.3340940535398 89.163 0.086136 89.163 89.148 89.234 0 9 8 2 0 0 0 0.48643 1 21452 21452 2.0598 0.21551 1 69276 37174 8744 23508 23519 42374 42374 0.06255440590075523 RMSHTHFYE 9 Unmodified _RMSHTHFYE_ 0 0 0 REV__L1MB5_dup5825|chr11:3717297-3718252:-|1.2052591855410062|0.0696199187750966|4.11|151.0|13|2|sense REV__L1MB5_dup5825|chr11:3717297-3718252:-|1.2052591855410062|0.0696199187750966|4.11|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 604.2689208984375 2 604.26929 1206.52403 NaN NaN NaN NaN NaN NaN NaN 117.77 1 121.38 120.88 121.88 3.6124 0 0 0 0.4007 1 28011 28011 0.52476 0 1 + 37175 26076 23509 23520 42375 42375 -0.07097457208078595 RMSIAELDPS 10 Unmodified _RMSIAELDPS_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000479941.1_1_2:242607971-242608235:+|nuORF;ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000460211.5_1_2:242607386-242610957:+|nuORF nc|ENSG00000168397|Q9Y4P1-3|ATG4B nc|ENSG00000168397|Q9Y4P1-3|ATG4B MSMS UPN47_class_I_Rep_3 4 559.7782592773438 2 559.779156 1117.54376 NaN NaN NaN NaN NaN NaN NaN 22.582 1 25.932 25.432 26.432 3.3503 0 0 0 0.53105 1 2726 2726 2.7352 0.43246 1 37176 4368 23510 23521 42376 42376 -0.010311259879699719 RMTILPKAIY 10 Unmodified _RMTILPKAIY_ 0 0 0 L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|16|2|sense L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|16|2|sense L1PA17_dup2435|chr9:36237646-36239461:-|2.9695275597376694|0.1849553685296548|4.0|151.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 402.57452392578125 3 402.57401 1204.7002 NaN NaN NaN NaN NaN NaN NaN 94.438 1 98.34 97.84 98.84 3.9016 0 0 0 0.53105 1 22378 22378 0.62683 0 1 37177 14165 23511 23522 42377 42377 0.10603783973147074 RMTRDLVSL 9 Unmodified _RMTRDLVSL_ 0 0 0 REV__L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|77|2|sense REV__L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|77|2|sense MSMS UPN48_class_I_Rep_1 5 545.8072509765625 2 545.805508 1089.59646 NaN NaN NaN NaN NaN NaN NaN 42.704 1 46.212 45.712 46.712 3.5079 0 0 0 0.38478 1 7929 7929 4.3292 0 1 + 37178 29837 23512 23523 42378 42378 0.055248768654792 RMVIIKKIT 9 Unmodified _RMVIIKKIT_ 0 0 0 L1MC_dup5491|chr11:3882610-3883089:-|1.7877799129893284|0.0074890382282881|7.9|151.0|10|2|sense L1MC_dup5491|chr11:3882610-3883089:-|1.7877799129893284|0.0074890382282881|7.9|151.0|10|2|sense L1MC_dup5491|chr11:3882610-3883089:-|1.7877799129893284|0.0074890382282881|7.9|151.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 551.364501953125 2 551.362462 1100.71037 -0.20121 -0.00011094 3.1982 0.0017634 2.997 0.0016524 551.3637439886966 12.725 0.13138 12.725 12.675 12.807 0 10 8 2 0 0 0 0.50088 1 200 200 0.52476 0 1 21064 37179 11066 23513 23524 42379 42379 0.16404391698392828 RMVIIKKV 8 Unmodified _RMVIIKKV_ 0 0 0 L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|53|2|sense;L1PA6_dup391|chr1:197573397-197576092:+|1.423818353085879|0.0336577535353406|5.4|151.0|25|1|sense L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|53|2|sense L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|53|2|sense MSMS UPN46_class_I_Rep_3 1 494.2702941894531 2 493.830798 985.647042 NaN NaN NaN NaN NaN NaN NaN 89.963 1 89.963 89.463 90.463 0 0 0 0 0.40798 1 21671 21671 0 0 1 37180 14585 23514 23525 42380 42380 0.1536445098116701 RMVIIRHAIR 10 Unmodified _RMVIIRHAIR_ 0 0 0 REV__Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|12|3|sense REV__Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|12|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 632.3617553710938 2 632.892783 1263.77101 0.4339 0.00027461 -0.416 -0.00026328 0.017903 1.1331E-05 632.8927411175291 91.358 0.23636 94.984 94.818 95.054 3.626 45 35 2 0 0 0 0.84575 1 21949 21949 3.5965 0.60125 1 2445200 + 37181 32749 23515 23526 42381 42381 0.14967921801348893 RMVIIRHAIR 10 Unmodified _RMVIIRHAIR_ 0 0 0 REV__Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|12|3|sense REV__Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|12|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 632.892783 1263.77101 0.50632 0.00032044 -1.3788 -0.0008726 -0.87244 -0.00055216 633.3928515845734 91.529 0.047867 94.93 94.903 94.951 3.401 -0.14636 -0.0010545 NaN 3.5965 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 316770 + 37182 32749 23515 23526 0.14967921801348893 RMVIIRHAIR 10 Unmodified _RMVIIRHAIR_ 0 0 0 REV__Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|12|3|sense REV__Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|12|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 632.892783 1263.77101 0.49667 0.00031434 0.20544 0.00013002 0.7021 0.00044436 632.8929295105461 91.511 0.025421 95.267 95.254 95.279 3.7554 0.18995 0.00095079 NaN 3.5965 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 558800 + 37183 32749 23515 23526 0.14967921801348893 RMVILLRS 8 Unmodified _RMVILLRS_ 0 0 0 HAL1_dup20656|chr17:62048874-62049351:+|1.1349441041042072|0.0167591052006088|6.08|150.0|28|2|anti-sense HAL1_dup20656|chr17:62048874-62049351:+|1.1349441041042072|0.0167591052006088|6.08|150.0|28|2|anti-sense HAL1_dup20656|chr17:62048874-62049351:+|1.1349441041042072|0.0167591052006088|6.08|150.0|28|2|anti-sense MSMS UPN47_class_I_Rep_3 4 494.31072998046875 2 494.310229 986.605906 NaN NaN NaN NaN NaN NaN NaN 70.344 1 73.556 73.056 74.056 3.2113 0 0 0 0.40746 1 17203 17203 0.69038 0 1 37184 7866 23516 23527 42382 42382 0.11206689941695913 RMVKKMKK 8 Unmodified _RMVKKMKK_ 0 0 0 nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40 nc|ENSG00000196182|Q8N2I9-3|STK40 nc|ENSG00000196182|Q8N2I9-3|STK40 MULTI-MSMS UPN47_class_I_Rep_3 4 524.8269653320312 2 524.827732 1047.64091 0.39805 0.00020891 -1.1223 -0.00058899 -0.72421 -0.00038008 524.8269919159939 90.952 0.13798 94.353 94.282 94.42 3.401 28 18 2 0 0 0 0.82752 1 22769 22769 0.69038 0.088878 1 78195 37185 5286 23517 23528 42383 42383 0.11899609477973172 RMVQHTQT 8 Unmodified _RMVQHTQT_ 0 0 0 L1PA15-16_dup1265|chr19:44293192-44295867:+|1.6049620194654548|0.2079336867615537|2.95|150.0|57|2|sense L1PA15-16_dup1265|chr19:44293192-44295867:+|1.6049620194654548|0.2079336867615537|2.95|150.0|57|2|sense L1PA15-16_dup1265|chr19:44293192-44295867:+|1.6049620194654548|0.2079336867615537|2.95|150.0|57|2|sense MSMS UPN48_class_I_Rep_1 5 500.7525329589844 2 500.753276 999.491998 NaN NaN NaN NaN NaN NaN NaN 22.526 1 26.087 25.587 26.587 3.5605 0 0 0 0.40738 1 2212 2212 0.79363 0 1 37186 14000 23518 23529 42384 42384 -0.007768248912270792 RMVSMAWL 8 Unmodified _RMVSMAWL_ 0 0 0 ENST00000446420.2_1_9:96233459-96233558:+|nuORF ENST00000446420.2_1_9:96233459-96233558:+|nuORF ENST00000446420.2_1_9:96233459-96233558:+|nuORF MSMS UPN47_class_I_Rep_3 4 497.26287841796875 2 497.254065 992.493578 NaN NaN NaN NaN NaN NaN NaN 45.872 1 49.116 48.616 49.616 3.2441 0 0 0 0.40157 1 9761 9761 7.2892 0 1 37187 6792 23519 23530 42385 42385 -0.0029690712681258447 RMWPDFLF 8 Unmodified _RMWPDFLF_ 0 0 0 ENST00000432148.5_1_9:71160487-71160714:-|nuORF ENST00000432148.5_1_9:71160487-71160714:-|nuORF ENST00000432148.5_1_9:71160487-71160714:-|nuORF MSMS UPN48_class_I_Rep_1 5 556.6838989257812 2 556.273312 1110.53207 NaN NaN NaN NaN NaN NaN NaN 115.6 1 119.23 118.73 119.73 3.6282 0 0 0 0.40746 1 28127 28127 0.69038 0 1 37188 6734 23520 23531 42386 42386 -0.01877278220649714 RMWPDFLF 8 Unmodified _RMWPDFLF_ 0 0 0 ENST00000432148.5_1_9:71160487-71160714:-|nuORF ENST00000432148.5_1_9:71160487-71160714:-|nuORF ENST00000432148.5_1_9:71160487-71160714:-|nuORF MSMS UPN48_class_I_Rep_3 7 556.27392578125 2 556.273312 1110.53207 NaN NaN NaN NaN NaN NaN NaN 39.432 1 43.088 42.588 43.588 3.6557 0 0 0 0.40746 1 6898 6898 0.69038 0 1 37189 6734 23520 23531 42387 42387 -0.01877278220649714 RMWRNGNTY 9 Unmodified _RMWRNGNTY_ 0 0 0 L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|48|3|sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|48|3|sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|48|3|sense MSMS UPN47_class_I_Rep_1 2 599.2802124023438 2 599.282731 1196.55091 NaN NaN NaN NaN NaN NaN NaN 42.015 1 45.694 45.194 46.194 3.6792 0 0 0 0.37891 1 8497 8497 5.7319 0 1 37190 15298 23521 23532 42388 42388 -0.03950348596868025 RMYKEHRR 8 Unmodified _RMYKEHRR_ 0 0 0 ENST00000564919.1_1_16:8947243-8947384:+|nuORF ENST00000564919.1_1_16:8947243-8947384:+|nuORF ENST00000564919.1_1_16:8947243-8947384:+|nuORF MSMS UPN48_class_I_Rep_1 5 588.312744140625 2 588.314366 1174.61418 NaN NaN NaN NaN NaN NaN NaN 73.21 1 76.691 76.191 77.191 3.4812 0 0 0 0.40643 1 17237 17237 2.0598 0 1 37191 7480 23522 23533 42389 42389 0.03385636911002621 RMYPPRSPK 9 Unmodified _RMYPPRSPK_ 0 0 0 nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ATXN2L|p.C462Vfs*19|1|0.24|ENSG00000168488|chr16:28832265-28832265|C/-|frameshift_variant nc|ENSG00000168488|Q8WWM7-6|ATXN2L nc|ENSG00000168488|Q8WWM7-6|ATXN2L MSMS UPN48_class_I_Rep_2 6 566.3085327148438 2 566.308218 1130.60188 NaN NaN NaN NaN NaN NaN NaN 101.99 1 105.71 105.21 106.21 3.7252 0 0 0 0.39428 1 24173 24173 2.0598 0 1 37192 4375 23523 23534 42390 42390 0.041806004479667536 RMYRRQHLIQ 10 Unmodified _RMYRRQHLIQ_ 0 0 0 REV__L1ME2_dup12265|chr20:41059613-41060602:+|1.1758182751148396|0.0402985840404176|4.87|151.0|21|2|sense REV__L1ME2_dup12265|chr20:41059613-41060602:+|1.1758182751148396|0.0402985840404176|4.87|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 467.5924987792969 3 467.594578 1399.76191 NaN NaN NaN NaN NaN NaN NaN 85.05 1 85.05 84.55 85.55 0 0 0 0 0.53105 1 20269 20269 0.69767 0.19171 1 + 37193 27827 23524 23535 42391 42391 0.07801528445020267 RNAELEPL 8 Unmodified _RNAELEPL_ 0 0 0 REV__ENST00000527696.5_1_11:209075-209246:+|nuORF REV__ENST00000527696.5_1_11:209075-209246:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 471.25555419921875 2 471.256174 940.497795 0.25605 0.00012066 -0.82121 -0.000387 -0.56516 -0.00026634 471.2557073694981 24.73 0.73574 28.366 28.076 28.812 3.6363 119 85 2 0 0 0 0.82752 1 2844 2844 0.69038 0 1 82449 + 37194 22822 23525 23536 42392 42392 0.02516596892075995 RNANEYGFY 9 Unmodified _RNANEYGFY_ 0 0 0 L1MB4_dup6506|chr13:19975190-19975837:-|3.1846453856080688|0.0117707169306382|8.08|151.0|23|3|sense L1MB4_dup6506|chr13:19975190-19975837:-|3.1846453856080688|0.0117707169306382|8.08|151.0|23|3|sense L1MB4_dup6506|chr13:19975190-19975837:-|3.1846453856080688|0.0117707169306382|8.08|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 567.254150390625 2 567.254163 1132.49377 NaN NaN NaN NaN NaN NaN NaN 28.249 1 31.806 31.306 32.306 3.5571 0 0 0 0.39518 1 3751 3751 1.8442 0 1 37195 10553 23526 23537 42393 42393 -0.0671749260161505 RNAPWRLF 8 Unmodified _RNAPWRLF_ 0 0 0 nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000481328.7_1_11:76890894-76905079:+|nuORF nc|ENSG00000137474|Q13402-5|MYO7A nc|ENSG00000137474|Q13402-5|MYO7A MSMS UPN47_class_I_Rep_1 2 530.7743530273438 2 530.295968 1058.57738 NaN NaN NaN NaN NaN NaN NaN 95.525 1 99.289 98.789 99.789 3.7648 0 0 0 0.40738 1 23711 23711 0.79363 0 1 37196 3026 23527 23538 42394 42394 0.050437083567203445 RNAQGNPAG 9 Unmodified _RNAQGNPAG_ 0 0 0 L1MB3_dup17248|chr22:45826083-45827129:+|3.183440457473949|0.0236688777870952|7.07|151.0|30|3|sense L1MB3_dup17248|chr22:45826083-45827129:+|3.183440457473949|0.0236688777870952|7.07|151.0|30|3|sense L1MB3_dup17248|chr22:45826083-45827129:+|3.183440457473949|0.0236688777870952|7.07|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 442.7184143066406 2 442.72029 883.426027 NaN NaN NaN NaN NaN NaN NaN 110.19 1 110.19 109.69 110.69 0 0 0 0 0.38639 1 27126 27126 3.9444 0.3479 1 37197 10384 23528 23539 42395 42395 -0.02034897741759778 RNARRAFA 8 Unmodified _RNARRAFA_ 0 0 0 nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;ENSG00000101624|ENST00000262127|CEP76 nc|ENSG00000101624|Q8TAP6-2|CEP76 nc|ENSG00000101624|Q8TAP6-2|CEP76 MSMS UPN46_class_I_Rep_3 1 481.2758483886719 2 481.275567 960.53658 NaN NaN NaN NaN NaN NaN NaN 51.003 1 51.003 50.503 51.503 0 0 0 0 0.40625 1 10809 10809 2.3027 0 1 37198 1581 23529 23540 42396 42396 0.054733670371206244 RNATVFCM 8 Unmodified _RNATVFCM_ 0 0 0 L1MA3_dup1222|chr2:210121697-210123822:+|1.229380512780164|0.0373335269762264|5.04|149.0|115|2|anti-sense L1MA3_dup1222|chr2:210121697-210123822:+|1.229380512780164|0.0373335269762264|5.04|149.0|115|2|anti-sense L1MA3_dup1222|chr2:210121697-210123822:+|1.229380512780164|0.0373335269762264|5.04|149.0|115|2|anti-sense MSMS UPN48_class_I_Rep_2 6 471.35443115234375 2 471.220223 940.425892 NaN NaN NaN NaN NaN NaN NaN 75.975 1 79.577 79.077 80.077 3.6011 0 0 0 0.40738 1 17933 17933 0.79363 0 1 37199 9466 23530 23541 42397 42397 -0.0467035705763692 RNAYMLVY 8 Unmodified _RNAYMLVY_ 0 0 0 nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-7|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 nc|ENSG00000090686|Q86UV5-3|USP48 MSMS UPN46_class_I_Rep_3 1 515.2651977539062 2 515.262945 1028.51134 NaN NaN NaN NaN NaN NaN NaN 76.773 1 76.773 76.273 77.273 0 0 0 0 0.40604 1 17927 17927 2.5775 0.27475 1 37200 1356 23531 23542 42398 42398 -0.0017786860032629193 RNCIKTIY 8 Unmodified _RNCIKTIY_ 0 0 0 L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|68|3|anti-sense L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|68|3|anti-sense L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|68|3|anti-sense MSMS UPN47_class_I_Rep_2 3 505.7650146484375 2 505.776219 1009.53789 NaN NaN NaN NaN NaN NaN NaN 74.002 1 77.307 76.807 77.807 3.3048 0 0 0 0.40404 1 18221 18221 5.2307 0 1 37201 12036 23532 23543 42399 42399 0.033498202909981956 RNDEQFLEAF 10 Unmodified _RNDEQFLEAF_ 0 0 0 nc|ENSG00000138735|O76074-2|PDE5A;ENSG00000138735|ENST00000354960|PDE5A nc|ENSG00000138735|O76074-2|PDE5A nc|ENSG00000138735|O76074-2|PDE5A MSMS UPN47_class_I_Rep_2 3 634.7989501953125 2 634.798934 1267.58332 NaN NaN NaN NaN NaN NaN NaN 52.06 1 55.393 54.893 55.893 3.3332 0 0 0 0.53105 1 11585 11585 1.6526 0 1 37202 3107 23533 23544 42400 42400 -0.03977282712912711 RNDLTGVLY 9 Unmodified _RNDLTGVLY_ 0 0 0 ENSG00000136928|ENST00000259455|GABBR2 ENSG00000136928|ENST00000259455|GABBR2 ENSG00000136928|ENST00000259455|GABBR2 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7825927734375 2 525.782556 1049.55056 0.016378 8.6113E-06 0.118 6.2044E-05 0.13438 7.0655E-05 525.7824905547996 42.91 0.80239 46.15 45.758 46.56 3.2394 93 52 2 0 0 0 0.32682 1 8883 8883 12.241 0 1 152720 37203 2997 23534 23545 42401 42401 0.027765549549030766 RNEIGVFY 8 Unmodified _RNEIGVFY_ 0 0 0 ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1 ENST00000419769.6_1_10:127430814-127452038:+|nuORF ENST00000419769.6_1_10:127430814-127452038:+|nuORF MSMS UPN48_class_I_Rep_3 7 499.25872802734375 2 499.258717 996.50288 NaN NaN NaN NaN NaN NaN NaN 34.883 1 38.555 38.055 39.055 3.6721 0 0 0 0.40738 1 5589 5589 0.79363 0 1 37204 1845 23535 23546 42402 42402 0.004489007547249457 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 581.8391723632812 2 581.838197 1161.66184 0.51633 0.00030042 1.5 0.00087274 2.0163 0.0011732 581.8387804268514 108.98 0.37953 108.98 108.85 109.23 0 28 20 2 0 0 0 0.36392 1 26764 26764 10.074 1.3285 1 4442000 + 37205 22158 23536 23547 42403 42403 0.08747614382855318 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 581.8395385742188 2 581.838197 1161.66184 0.51638 0.00030045 1.5551 0.00090482 2.0715 0.0012053 581.8389117875852 109.32 0.15511 109.32 109.24 109.4 0 16 13 2 0 0 0 0.42249 1 26826 26826 6.7232 0.51738 1 1074800 + 37206 22158 23536 23547 42404 42404 0.08747614382855318 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MSMS UPN46_class_I_Rep_3 1 581.838623046875 2 581.838197 1161.66184 NaN NaN NaN NaN NaN NaN NaN 109.52 1 109.52 109.02 110.02 0 0 0 0 0.38639 1 26904 26904 3.9444 0 1 + 37207 22158 23536 23547 42405 42405 0.08747614382855318 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 581.8392944335938 2 581.838197 1161.66184 0.49521 0.00028813 1.0564 0.00061466 1.5516 0.00090279 581.8389859994446 108.69 0.21651 112.32 112.28 112.49 3.6355 28 17 2 0 0 0 0.43153 1 26791 26791 6.2058 0.47393 1 8529000 + 37208 22158 23536 23547 42406 42406 0.08747614382855318 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MSMS UPN48_class_I_Rep_3 7 581.8380737304688 2 581.838197 1161.66184 NaN NaN NaN NaN NaN NaN NaN 108.84 1 112.51 112.01 113.01 3.6751 0 0 0 0.37692 1 25806 25806 6.2058 0.47393 1 + 37209 22158 23536 23547 42407 42407 0.08747614382855318 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 581.838197 1161.66184 0.51638 0.00030045 1.5551 0.00090482 2.0715 0.0012053 581.8389117875852 109.32 0.15511 109.32 109.24 109.4 0 0 0 NaN 6.7232 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1074800 + 37210 22158 23536 23547 0.08747614382855318 RNEKKKFVN 9 Unmodified _RNEKKKFVN_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 581.838197 1161.66184 0.49128 0.00028584 1.6846 0.00098016 2.1759 0.001266 581.8391530466788 108.71 0.1716 112.38 112.3 112.47 3.6751 0.047045 0.00014213 NaN 6.2058 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 5175700 + 37211 22158 23536 23547 0.08747614382855318 RNEKNRPRRRF 11 Unmodified _RNEKNRPRRRF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-SECPEP UPN47_class_I_Rep_3 4 510.7811279296875 3 510.294179 1527.86071 0.28347 0.00014465 0.13486 6.882E-05 0.41833 0.00021347 510.62864369348006 49.601 0.29289 52.827 52.71 53.003 3.2262 17 15 2 0 0 0 22.551 1 10894 10894 0.40827 0 1 41302 37212 2624 23537 23548 42408 42408 0.11789267734229725 RNELTSSF 8 Unmodified _RNELTSSF_ 0 0 0 L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|182|2|anti-sense L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|182|2|anti-sense L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|182|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 477.2376403808594 2 477.237981 952.461409 -0.25523 -0.00012181 0.03317 1.583E-05 -0.22206 -0.00010598 477.23784106194626 35.42 0.66945 38.834 38.482 39.152 3.4139 79 42 3 0 0 0 0.82752 1 6592 6592 7.2892 0 1 119860 37213 9951 23538 23549 42409 42409 -0.016722800046181874 RNERKIINA 9 Unmodified _RNERKIINA_ 0 0 0 REV__L1MC5_dup1659|chr2:135749417-135750141:-|2.1751981667678444|0.1246581256896634|4.13|151.0|1|1|sense REV__L1MC5_dup1659|chr2:135749417-135750141:-|2.1751981667678444|0.1246581256896634|4.13|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 557.7509155273438 2 557.327996 1112.64144 NaN NaN NaN NaN NaN NaN NaN 33.795 1 33.795 33.295 34.295 0 0 0 0 0.39428 1 5955 5955 2.0598 0 1 + 37214 27070 23539 23550 42410 42410 0.08962443723066826 RNFHPFFY 8 Unmodified _RNFHPFFY_ 0 0 0 L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.26171875 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 20.306 1 23.954 23.454 24.454 3.648 0 0 0 0.40738 1 1717 1717 0.79363 0 1 37215 9899 23540 23551 42411 42411 -0.02335686771471046 RNFRRWLG 8 Unmodified _RNFRRWLG_ 0 0 0 REV__nc|ENSG00000145777|Q969D9-2|TSLP REV__nc|ENSG00000145777|Q969D9-2|TSLP MSMS UPN48_class_I_Rep_3 7 552.7615966796875 2 552.812316 1103.61008 NaN NaN NaN NaN NaN NaN NaN 18.782 1 22.369 21.869 22.869 3.5874 0 0 0 0.40738 1 1301 1301 0.79363 0.10326 1 + 37216 19523 23541 23552 42412 42412 0.06241915479608906 RNFVEFFY 8 Unmodified _RNFVEFFY_ 0 0 0 L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|191|1|anti-sense L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|191|1|anti-sense L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|191|1|anti-sense MSMS UPN47_class_I_Rep_3 4 561.2599487304688 2 561.274367 1120.53418 NaN NaN NaN NaN NaN NaN NaN 70.738 1 73.949 73.449 74.449 3.2113 0 0 0 0.4032 1 17321 17321 6.3541 0 1 37217 15202 23542 23553 42413 42413 -0.021265262111910488 RNGQGPKL 8 Unmodified _RNGQGPKL_ 0 0 0 REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|39|3|sense REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 435.2515869140625 2 435.251226 868.487899 -0.0057045 -2.4829E-06 -0.11947 -5.1998E-05 -0.12517 -5.4481E-05 435.2510641843174 68.672 0.17369 72.124 71.971 72.144 3.4517 17 16 2 0 0 0 0.82752 1 15878 15878 0.69038 0 1 51819 + 37218 27248 23543 23554 42414 42414 0.048394536773685104 RNGQGPKL 8 Unmodified _RNGQGPKL_ 0 0 0 REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|39|3|sense REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|39|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 435.251226 868.487899 -0.0057045 -2.4829E-06 -0.11947 -5.1998E-05 -0.12517 -5.4481E-05 435.2510641843174 68.672 0.17369 72.124 71.971 72.144 3.4517 0.022156 0.00015647 NaN 0.69038 17 16 2 NaN NaN NaN NaN 0 NaN NaN 0 51819 + 37219 27248 23543 23554 0.048394536773685104 RNGQGPKL 8 Unmodified _RNGQGPKL_ 0 0 0 REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|39|3|sense REV__L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|39|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 435.251226 868.487899 0.10777 4.6908E-05 -0.45351 -0.00019739 -0.34574 -0.00015048 435.25102811770915 68.571 0.17256 72.08 72.047 72.219 3.5083 -0.022156 -0.00013432 NaN 0.69038 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 49612 + 37220 27248 23543 23554 0.048394536773685104 RNGQIALK 8 Unmodified _RNGQIALK_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|20|2|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|20|2|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|20|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 450.27447509765625 2 450.274701 898.534849 0.15052 6.7777E-05 -1.058 -0.00047639 -0.90748 -0.00040862 450.27417122999816 111.59 0.17958 115.26 115.24 115.42 3.6666 17 14 2 0 0 0 0.82752 1 26549 26549 0.79363 0 1 188340 37221 13279 23544 23555 42415 42415 0.08152313228492858 RNGQIALK 8 Unmodified _RNGQIALK_ 0 0 0 L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|20|2|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|20|2|sense L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 450.275146484375 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.33 1 76.867 76.367 77.367 3.5373 0 0 0 0.40625 1 17150 17150 2.3027 0 1 37222 13279 23544 23555 42416 42416 0.08152313228492858 RNHISIPTS 9 Unmodified _RNHISIPTS_ 0 0 0 L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|124|3|anti-sense L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|124|3|anti-sense L1MC5a_dup13784|chr15:50328270-50329906:-|1.4526532699004613|0.0201995528998426|6.17|151.0|124|3|anti-sense MSMS UPN46_class_I_Rep_3 1 513.2462768554688 2 512.780348 1023.54614 NaN NaN NaN NaN NaN NaN NaN 16.615 1 16.615 16.115 17.115 0 0 0 0 0.39518 1 1172 1172 1.8442 0 1 37223 11716 23545 23556 42417 42417 0.03531090531987502 RNHRWKKIC 9 Unmodified _RNHRWKKIC_ 0 0 0 L1MC_dup863|chr2:97492946-97493946:+|1.4554738547349766|0.1206556288612786|3.59|149.0|36|3|sense;L1MC_dup862|chr2:97263238-97264238:-|1.3400189722322486|0.1234782259051367|3.44|149.0|36|3|sense L1MC_dup863|chr2:97492946-97493946:+|1.4554738547349766|0.1206556288612786|3.59|149.0|36|3|sense L1MC_dup863|chr2:97492946-97493946:+|1.4554738547349766|0.1206556288612786|3.59|149.0|36|3|sense MSMS UPN48_class_I_Rep_1 5 620.8452758789062 2 620.845833 1239.67711 NaN NaN NaN NaN NaN NaN NaN 81.652 1 85.228 84.728 85.728 3.5753 0 0 0 0.39518 1 19478 19478 1.8442 0 1 37224 11076 23546 23557 42418 42418 0.06686202699052046 RNHYRVYNL 9 Unmodified _RNHYRVYNL_ 0 0 0 nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;nc|ENSG00000274391|P56180-3|TPTE;ENSG00000132958|ENST00000697147|TPTE2 nc|ENSG00000274391|P56180-2|TPTE nc|ENSG00000274391|P56180-2|TPTE MSMS UPN47_class_I_Rep_3 4 617.826416015625 2 617.825621 1233.63669 NaN NaN NaN NaN NaN NaN NaN 69.607 1 72.811 72.311 73.311 3.2044 0 0 0 0.39518 1 16981 16981 1.8442 0.6509 1 37225 5821 23547 23558 42419 42419 0.029215595802725147 RNIIEKAL 8 Unmodified _RNIIEKAL_ 0 0 0 REV__L1PREC2_dup4289|chrX:19770080-19771041:-|3.206102519284113|0.0074570555939532|8.75|151.0|1|1|sense REV__L1PREC2_dup4289|chrX:19770080-19771041:-|3.206102519284113|0.0074570555939532|8.75|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 478.79791259765625 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 62.388 1 65.851 65.351 66.351 3.4625 0 0 0 0.40527 1 13958 13958 3.5965 0 1 + 37226 30714 23548 23559 42420 42420 0.10189753059785289 RNIIEKAL 8 Unmodified _RNIIEKAL_ 0 0 0 REV__L1PREC2_dup4289|chrX:19770080-19771041:-|3.206102519284113|0.0074570555939532|8.75|151.0|1|1|sense REV__L1PREC2_dup4289|chrX:19770080-19771041:-|3.206102519284113|0.0074570555939532|8.75|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 478.79791259765625 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 62.191 1 65.702 65.202 66.202 3.5104 0 0 0 0.40527 1 13804 13804 3.5965 0 1 + 37227 30714 23548 23559 42421 42421 0.10189753059785289 RNIKIKLK 8 Unmodified _RNIKIKLK_ 0 0 0 L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 506.8530578613281 2 506.853119 1011.69168 0.31584 0.00016009 -0.19977 -0.00010125 0.11608 5.8834E-05 506.8529220495565 108.99 0.7616 108.99 108.88 109.64 0 87 54 2 0 0 0 0.82752 1 26712 26712 0.69038 0 1 8069700 37228 9236 23549 23560 42422 42422 0.18630598118818398 RNIKIKLK 8 Unmodified _RNIKIKLK_ 0 0 0 L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.8530578613281 2 506.853119 1011.69168 0.3091 0.00015667 -0.65051 -0.00032971 -0.3414 -0.00017304 506.85284302051343 107.71 0.079086 111.39 111.34 111.41 3.6783 14 9 2 0 0 0 0.82752 1 25467 25467 0.69038 0 1 1981200 37229 9236 23549 23560 42423 42423 0.18630598118818398 RNIKIKLK 8 Unmodified _RNIKIKLK_ 0 0 0 L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense L1M7_dup319|chr2:47881275-47881754:-|2.3730641086828554|0.0094781775052835|7.97|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8531494140625 2 506.853119 1011.69168 0.27237 0.00013805 -0.13263 -6.7224E-05 0.13974 7.0828E-05 506.8529840455236 107.96 0.37105 111.64 111.29 111.66 3.6813 69 41 3 0 0 0 0.82752 1 25417 25417 0.69038 0 1 6688900 37230 9236 23549 23560 42424 42424 0.18630598118818398 RNILYKTIF 9 Unmodified _RNILYKTIF_ 0 0 0 ENST00000495701.1_1_1:3746348-3747783:-|nuORF;ENSG00000116198|ENST00000378230|CEP104 ENST00000495701.1_1_1:3746348-3747783:-|nuORF ENST00000495701.1_1_1:3746348-3747783:-|nuORF MSMS UPN46_class_I_Rep_3 1 584.3480834960938 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 35.211 1 35.211 34.711 35.711 0 0 0 0 0.39518 1 6383 6383 1.8442 0.19162 1 37231 2169 23550 23561 42425 42425 0.10450570673742732 RNIMLCFGK 9 Unmodified _RNIMLCFGK_ 0 0 0 L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|104|3|anti-sense L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|104|3|anti-sense L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|104|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 541.2854614257812 2 541.285897 1080.55724 -0.45835 -0.0002481 -0.71735 -0.00038829 -1.1757 -0.00063639 541.2853933588774 13.156 0.20359 16.53 16.429 16.633 3.3734 28 20 2 0 0 0 0.48846 1 248 248 1.8442 0.19162 1 54959 37232 13084 23551 23562 42426 42426 0.020184533102565183 RNIRLAIS 8 Unmodified _RNIRLAIS_ 0 0 0 REV__ENST00000574285.2_1_16:9203969-9204164:+|nuORF REV__ENST00000574285.2_1_16:9203969-9204164:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 24.189 1 27.654 27.154 28.154 3.4655 0 0 0 0.40746 1 3168 3168 0.69038 0 1 + 37233 23103 23552 23563 42427 42427 0.10392288636876401 RNIRLAIS 8 Unmodified _RNIRLAIS_ 0 0 0 REV__ENST00000574285.2_1_16:9203969-9204164:+|nuORF REV__ENST00000574285.2_1_16:9203969-9204164:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.796142578125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 18.677 1 22.032 21.532 22.532 3.3545 0 0 0 0.40746 1 1600 1600 0.69038 0 1 + 37234 23103 23552 23563 42428 42428 0.10392288636876401 RNITELKTL 9 Unmodified _RNITELKTL_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MULTI-MSMS UPN47_class_I_Rep_3 4 544.326904296875 2 544.327131 1086.63971 -0.074383 -4.0489E-05 -0.21916 -0.00011929 -0.29354 -0.00015978 544.3270213355781 38.279 1.2339 41.52 41.032 42.266 3.2414 199 90 3 0 0 0 0.095207 2 7500 7342;7500 34.932 0 1 471840 37235 1973 23553 23564 42429;42430 42430 0.09985389914436382 RNKAILEL 8 Unmodified _RNKAILEL_ 0 0 0 REV__nc|ENSG00000147162|O15294-4|OGT REV__nc|ENSG00000147162|O15294-4|OGT MULTI-MSMS UPN48_class_I_Rep_1 5 478.79791259765625 2 478.798009 955.581465 0.2636 0.00012621 -0.31525 -0.00015094 -0.05165 -2.473E-05 478.7977950430052 62.043 0.11917 65.511 65.428 65.547 3.4678 12 9 2 0 0 0 0.82752 1 13839 13839 4.3292 0 1 59288 + 37236 19562 23554 23565 42431 42431 0.10189753059785289 RNKAILEL 8 Unmodified _RNKAILEL_ 0 0 0 REV__nc|ENSG00000147162|O15294-4|OGT REV__nc|ENSG00000147162|O15294-4|OGT MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 478.798009 955.581465 0.22649 0.00010844 -0.39017 -0.00018681 -0.16369 -7.8373E-05 478.79783536730497 62.002 0.18439 65.513 65.396 65.58 3.5104 -0.010134 -0.0001935 NaN 4.3292 19 14 3 NaN NaN NaN NaN 0 NaN NaN 0 90114 + 37237 19562 23554 23565 0.10189753059785289 RNKATHSY 8 Unmodified _RNKATHSY_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|115|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|115|3|sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|115|3|sense MSMS UPN48_class_I_Rep_2 6 488.7530822753906 2 488.75159 975.488627 NaN NaN NaN NaN NaN NaN NaN 43.589 1 47.351 46.851 47.851 3.7617 0 0 0 0.40404 1 8209 8209 5.2307 2.3415 1 37238 15455 23555 23566 42432 42432 -9.751673576374742E-05 RNKDECYF 8 Unmodified _RNKDECYF_ 0 0 0 L1ME3Cz_dup11934|chr21:33234307-33234451:+|1.7226830151581716|0.0801044207000872|4.43|151.0|4|2|sense L1ME3Cz_dup11934|chr21:33234307-33234451:+|1.7226830151581716|0.0801044207000872|4.43|151.0|4|2|sense L1ME3Cz_dup11934|chr21:33234307-33234451:+|1.7226830151581716|0.0801044207000872|4.43|151.0|4|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 538.1612548828125 2 537.737291 1073.46003 -0.1217 -6.5444E-05 -0.72602 -0.00039041 -0.84773 -0.00045585 537.7369529549244 12.846 0.18342 16.296 16.225 16.409 3.45 22 14 2 0 0 0 0.72333 1 172 172 0.79363 0 1 38962 37239 12764 23556 23567 42433 42433 -0.0737623736504247 RNKEGHYVM 9 Unmodified _RNKEGHYVM_ 0 0 0 L1PA7_dup3083|chr4:48728753-48731277:+|1.2508982035459992|0.0321369394746631|5.28|150.0|72|3|sense L1PA7_dup3083|chr4:48728753-48731277:+|1.2508982035459992|0.0321369394746631|5.28|150.0|72|3|sense L1PA7_dup3083|chr4:48728753-48731277:+|1.2508982035459992|0.0321369394746631|5.28|150.0|72|3|sense MSMS UPN48_class_I_Rep_1 5 567.2777099609375 2 567.279657 1132.54476 NaN NaN NaN NaN NaN NaN NaN 111.6 1 115.23 114.73 115.73 3.6326 0 0 0 0.39428 1 27072 27072 2.0598 0.21551 1 37240 14798 23557 23568 42434 42434 -0.016208668284207306 RNKELIAL 8 Unmodified _RNKELIAL_ 0 0 0 REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.7977600097656 2 478.798009 955.581465 0.22649 0.00010844 -0.39017 -0.00018681 -0.16369 -7.8373E-05 478.79783536730497 62.002 0.18439 65.513 65.396 65.58 3.5104 19 14 3 0 0 0 0.82752 1 13727 13727 3.9444 0 1 90114 + 37241 22944 23558 23569 42435 42435 0.10189753059785289 RNKFKRFK 8 Unmodified _RNKFKRFK_ 0 0 0 L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|37|3|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|37|3|sense L1MEd_dup12197|chr9:85638351-85639342:+|1.1344317086349678|0.0085912017927458|7.04|151.0|37|3|sense MSMS UPN46_class_I_Rep_3 1 562.3441162109375 2 562.345992 1122.67743 NaN NaN NaN NaN NaN NaN NaN 84.994 1 84.994 84.494 85.494 0 0 0 0 0.40746 1 20253 20253 0.69038 0 1 37242 13164 23559 23570 42436 42436 0.12099945690556524 RNKGILNV 8 Unmodified _RNKGILNV_ 0 0 0 REV__nc|ENSG00000162692|P19320-2|VCAM1 REV__nc|ENSG00000162692|P19320-2|VCAM1 MULTI-SECPEP UPN47_class_I_Rep_3 4 456.80328369140625 2 457.282526 912.550499 -0.75542 -0.00034544 0.6382 0.00029184 -0.11723 -5.3606E-05 457.28280874472165 32.391 0.82547 35.678 35.368 36.193 3.2867 114 62 2 0 0 0 0.72333 1 5571 5571 2.3027 0 1 123070 + 37243 19937 23560 23571 42437 42437 0.09072599745559273 RNKGILNV 8 Unmodified _RNKGILNV_ 0 0 0 REV__nc|ENSG00000162692|P19320-2|VCAM1 REV__nc|ENSG00000162692|P19320-2|VCAM1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 457.282526 912.550499 -0.36356 -0.00016625 0.27878 0.00012748 -0.084777 -3.8767E-05 457.2826546118792 31.756 0.74047 35.486 35.187 35.928 3.7293 -0.090362 -0.00016205 NaN 2.3027 91 56 2 NaN NaN NaN NaN 0 NaN NaN 0 145100 + 37244 19937 23560 23571 0.09072599745559273 RNKGILNV 8 Unmodified _RNKGILNV_ 0 0 0 REV__nc|ENSG00000162692|P19320-2|VCAM1 REV__nc|ENSG00000162692|P19320-2|VCAM1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 457.282526 912.550499 -0.47824 -0.00021869 0.41736 0.00019085 -0.060878 -2.7838E-05 457.2827369097916 32.095 0.75092 35.564 35.267 36.018 3.4691 -0.011636 -3.5306E-05 NaN 2.3027 86 56 2 NaN NaN NaN NaN 0 NaN NaN 0 102130 + 37245 19937 23560 23571 0.09072599745559273 RNKGRYLR 8 Unmodified _RNKGRYLR_ 0 0 0 REV__LTR16A_dup25|chr1:43764442-43764905:-|1.3414483434646045|0.0131736684660039|6.67|151.0|18|1|anti-sense REV__LTR16A_dup25|chr1:43764442-43764905:-|1.3414483434646045|0.0131736684660039|6.67|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8173828125 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 94.422 1 94.422 93.922 94.922 0 0 0 0 0.40738 1 22903 22903 0.79363 0 1 + 37246 30848 23561 23572 42438 42438 0.09229898134026371 RNKHKIHV 8 Unmodified _RNKHKIHV_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS UPN47_class_I_Rep_1 2 516.3133544921875 2 516.314692 1030.61483 0.37025 0.00019117 -1.5347 -0.00079237 -1.1644 -0.00060121 516.313710530404 91.164 0.1738 94.869 94.802 94.975 3.7053 39 23 2 0 0 0 0.82752 1 22748 22748 0.79363 0 1 142600 37247 5835 23562 23573 42439 42439 0.10074799622339015 RNKHKIHV 8 Unmodified _RNKHKIHV_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MATCH UPN46_class_I_Rep_3 1 2 516.314692 1030.61483 0.32398 0.00016727 -1.4364 -0.00074161 -1.1124 -0.00057434 516.3139153670708 94.91 0.07811 94.91 94.848 94.927 0 0.020334 6.542E-05 NaN 0.79363 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 287970 37248 5835 23562 23573 0.10074799622339015 RNKHKKYY 8 Unmodified _RNKHKKYY_ 0 0 0 L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|26|2|sense L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|26|2|sense L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.8203125 2 568.819807 1135.62506 -0.12731 -7.2419E-05 -1.1799 -0.00067114 -1.3072 -0.00074356 568.8190324398289 16 0.23776 19.497 19.412 19.65 3.4968 48 28 2 0 0 0 0.82752 1 974 974 0.69038 0 1 29734 37249 10745 23563 23574 42440 42440 0.06267362556923217 RNKIKKLS 8 Unmodified _RNKIKKLS_ 0 0 0 REV__FLAM_C_dup20511|chr17:58346851-58346969:+|1.4261871317348154|0.049239988617886|4.86|151.0|1|1|sense REV__FLAM_C_dup20511|chr17:58346851-58346969:+|1.4261871317348154|0.049239988617886|4.86|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 493.82769775390625 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 66.773 1 70.281 69.781 70.781 3.5077 0 0 0 0.40625 1 15192 15192 2.3027 0 1 + 37250 23318 23564 23575 42441 42441 0.14625434705089901 RNKKDRDR 8 Unmodified _RNKKDRDR_ 0 0 0 nc|ENSG00000174243|Q9BUQ8-2|DDX23;ENST00000551098.5_1_12:49231704-49245869:-|nuORF;ENST00000553182.5_1_12:49231126-49245869:-|nuORF;ENSG00000174243|ENST00000308025|DDX23 nc|ENSG00000174243|Q9BUQ8-2|DDX23 nc|ENSG00000174243|Q9BUQ8-2|DDX23 MSMS UPN47_class_I_Rep_2 3 544.7333374023438 2 544.307595 1086.60064 NaN NaN NaN NaN NaN NaN NaN 49.551 1 52.894 52.394 53.394 3.3431 0 0 0 0.40746 1 10813 10813 0.69038 0 1 37251 4674 23565 23576 42442 42442 0.06080102403393539 RNKKLTYQ 8 Unmodified _RNKKLTYQ_ 0 0 0 REV__MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|5|1|sense REV__MER11A_dup928|chr20:63916247-63917228:-|3.785844687549343|0.1638305213424508|4.53|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 525.8057250976562 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 13.031 1 16.404 15.904 16.904 3.3734 0 0 0 0.40746 1 211 211 0.69038 0 1 + 37252 31090 23566 23577 42443 42443 0.07536253945727367 RNKKRHIKNIK 11 Unmodified _RNKKRHIKNIK_ 0 0 0 HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|171|3|sense;HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|34|1|sense;HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|25|1|sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|41|1|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|171|3|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|171|3|sense MSMS UPN47_class_I_Rep_3 4 478.9742431640625 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 43.794 1 47.036 46.536 47.536 3.2419 0 0 0 0.38417 1 9122 9122 0.40827 0 1 37253 8246 23567 23578 42444 42444 0.2059369854760007 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 450.7761535644531 2 450.274701 898.534849 -0.1677 -7.5509E-05 -0.034332 -1.5459E-05 -0.20203 -9.0968E-05 450.27474606032905 73.034 0.19789 76.331 76.207 76.404 3.2971 19 15 2 0 0 0 0.72333 1 17954 17954 1.8442 0 1 38557 37254 16455 23568 23579 42445 42445 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MSMS UPN47_class_I_Rep_3 4 450.2745361328125 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 72.824 1 76.051 75.551 76.551 3.2271 0 0 0 0.40659 1 17948 17948 1.8442 0 1 37255 16455 23568 23579 42446 42446 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MSMS UPN47_class_I_Rep_3 4 450.2743225097656 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 72.944 1 76.171 75.671 76.671 3.2271 0 0 0 0.40472 1 17985 17985 4.3292 0 1 37256 16455 23568 23579 42447 42447 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.27508544921875 2 450.274701 898.534849 0.048945 2.2039E-05 -0.28882 -0.00013005 -0.23987 -0.00010801 450.2746219605585 71.809 0.12252 75.275 75.24 75.363 3.466 15 10 2 0 0 0 0.82752 1 16816 16816 1.8442 0 1 35621 37257 16455 23568 23579 42448 42448 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.2750549316406 2 450.274701 898.534849 0.047019 2.1172E-05 -0.11045 -4.9733E-05 -0.063432 -2.8562E-05 450.274643132974 72.677 0.74698 76.15 75.798 76.545 3.4732 78 57 2 0 0 0 0.82752 1 17019 17019 1.8442 0 1 104750 37258 16455 23568 23579 42449 42449 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.77606201171875 2 450.274701 898.534849 0.045502 2.0488E-05 0.059815 2.6933E-05 0.10532 4.7421E-05 450.2747100839601 73.455 0.24632 76.937 76.854 77.1 3.4812 26 24 2 0 0 0 0.82752 1 17315 17315 1.8442 0 1 46001 37259 16455 23568 23579 42450 42450 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 450.2740783691406 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.178 1 76.659 76.159 77.159 3.4812 0 0 0 0.40527 1 17227 17227 3.5965 0 1 37260 16455 23568 23579 42451 42451 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 450.2745666503906 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.315 1 76.796 76.296 77.296 3.4812 0 0 0 0.40659 1 17268 17268 1.8442 0 1 37261 16455 23568 23579 42452 42452 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 450.2750244140625 2 450.274701 898.534849 0.14316 6.446E-05 -0.23749 -0.00010694 -0.094332 -4.2475E-05 450.27460660176445 72.607 0.46718 76.172 75.928 76.396 3.5645 52 39 2 0 0 0 0.82752 1 16940 16940 1.8442 0 1 91934 37262 16455 23568 23579 42453 42453 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 450.2744445800781 2 450.274701 898.534849 0.14392 6.4802E-05 -0.25229 -0.0001136 -0.10837 -4.8797E-05 450.27456160937777 74.007 0.33154 77.585 77.365 77.696 3.5779 56 35 2 0 0 0 0.82752 1 17375 17375 1.8442 0 1 49235 37263 16455 23568 23579 42454 42454 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 450.27447509765625 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 73.507 1 77.045 76.545 77.545 3.5373 0 0 0 0.40659 1 17204 17204 1.8442 0 1 37264 16455 23568 23579 42455 42455 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 450.2752990722656 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 74.126 1 77.677 77.177 78.177 3.5505 0 0 0 0.40472 1 17367 17367 4.3292 0 1 37265 16455 23568 23579 42456 42456 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 450.274701 898.534849 0.045502 2.0488E-05 0.059815 2.6933E-05 0.10532 4.7421E-05 450.2747100839601 73.455 0.24632 76.937 76.854 77.1 3.4812 0 0 NaN 1.8442 26 24 2 NaN NaN NaN NaN 0 NaN NaN 0 46001 37266 16455 23568 23579 0.08152313228515595 RNKPGSLK 8 Unmodified _RNKPGSLK_ 0 0 0 MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MLT1J_dup12919|chr16:68283171-68283629:-|1.662845532906178|0.3479602166426332|2.26|151.0|14|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 450.274701 898.534849 0.21895 9.8586E-05 -0.23339 -0.00010509 -0.014443 -6.5032E-06 450.2744859945678 72.602 0.51053 76.139 75.845 76.356 3.5373 -0.058699 -5.0786E-05 NaN 1.8442 52 41 2 NaN NaN NaN NaN 0 NaN NaN 0 100760 37267 16455 23568 23579 0.08152313228515595 RNKQHLKW 8 Unmodified _RNKQHLKW_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|44|1|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|44|1|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|44|1|sense MSMS UPN48_class_I_Rep_1 5 555.319580078125 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 94.386 1 98.006 97.506 98.506 3.6208 0 0 0 0.40746 1 22712 22712 0.69038 0.088878 1 37268 9693 23569 23580 42457 42457 0.07542782276777871 RNKQHLKW 8 Unmodified _RNKQHLKW_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|44|1|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|44|1|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|44|1|sense MSMS UPN48_class_I_Rep_2 6 555.3197631835938 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 93.592 1 97.362 96.862 97.862 3.77 0 0 0 0.40746 1 22254 22254 0.69038 0.088878 1 37269 9693 23569 23580 42458 42458 0.07542782276777871 RNKQVIVS 8 Unmodified _RNKQVIVS_ 0 0 0 ENSG00000233412|ENST00000641450|OR5H15 ENSG00000233412|ENST00000641450|OR5H15 ENSG00000233412|ENST00000641450|OR5H15 MULTI-SECPEP UPN46_class_I_Rep_3 1 472.2875671386719 2 472.287808 942.561064 0.24562 0.000116 -0.19233 -9.0836E-05 0.053286 2.5166E-05 472.2876827439052 90.556 0.22578 90.556 90.425 90.651 0 37 28 2 0 0 0 0.72333 1 21840 21840 0.69038 0 1 612540 37270 5683 23570 23581 42459 42459 0.0874858239999412 RNKRNRPKER 10 Unmodified _RNKRNRPKER_ 0 0 0 MSTB1-int_dup8|chr1:117874574-117876065:+|1.352833596056351|0.4190376675362255|1.69|150.0|76|3|anti-sense MSTB1-int_dup8|chr1:117874574-117876065:+|1.352833596056351|0.4190376675362255|1.69|150.0|76|3|anti-sense MSTB1-int_dup8|chr1:117874574-117876065:+|1.352833596056351|0.4190376675362255|1.69|150.0|76|3|anti-sense MSMS UPN46_class_I_Rep_3 1 452.0295104980469 3 451.935992 1352.78615 NaN NaN NaN NaN NaN NaN NaN 57.757 1 57.757 57.257 58.257 0 0 0 0 0.53105 1 12674 12674 0.12286 0 1 37271 16587 23571 23582 42460 42460 0.12386504922892527 RNKVAEHL 8 Unmodified _RNKVAEHL_ 0 0 0 ENSG00000118496|ENST00000237281|FBXO30 ENSG00000118496|ENST00000237281|FBXO30 ENSG00000118496|ENST00000237281|FBXO30 MSMS UPN47_class_I_Rep_3 4 484.24505615234375 2 483.777608 965.540663 NaN NaN NaN NaN NaN NaN NaN 21.398 1 24.748 24.248 25.248 3.3496 0 0 0 0.40746 1 2387 2387 0.69038 0 1 37272 2252 23572 23583 42461 42461 0.056514117401775366 RNKVKGNS 8 Unmodified _RNKVKGNS_ 0 0 0 ENSG00000196440|ENST00000423738|ARMCX4 ENSG00000196440|ENST00000423738|ARMCX4 ENSG00000196440|ENST00000423738|ARMCX4 MSMS UPN47_class_I_Rep_2 3 451.77587890625 2 451.761958 901.509363 NaN NaN NaN NaN NaN NaN NaN 39.432 1 42.811 42.311 43.311 3.3785 0 0 0 0.40604 1 7744 7744 2.5775 0 1 37273 5307 23573 23584 42462 42462 0.05466838706092858 RNLCLLHW 8 Unmodified _RNLCLLHW_ 0 0 0 REV__MER51-int_dup172|chr6:166971894-166973218:-|1.86633068810844|0.3748978948280286|2.32|151.0|41|1|anti-sense REV__MER51-int_dup172|chr6:166971894-166973218:-|1.86633068810844|0.3748978948280286|2.32|151.0|41|1|anti-sense MSMS UPN46_class_I_Rep_3 1 527.7825927734375 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 83.157 1 83.157 82.657 83.657 0 0 0 0 0.40738 1 19736 19736 0.79363 0 1 + 37274 31384 23574 23585 42463 42463 0.029569462477638808 RNLGNKVN 8 Unmodified _RNLGNKVN_ 0 0 0 L1MEi_dup112|chr1:89702765-89703553:+|2.3966057773499165|0.0419327312109127|5.84|151.0|1|1|sense L1MEi_dup112|chr1:89702765-89703553:+|2.3966057773499165|0.0419327312109127|5.84|151.0|1|1|sense L1MEi_dup112|chr1:89702765-89703553:+|2.3966057773499165|0.0419327312109127|5.84|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 457.7643127441406 2 457.761958 913.509363 NaN NaN NaN NaN NaN NaN NaN 45.92 1 45.92 45.42 46.42 0 0 0 0 0.4044 1 9375 9375 4.756 2.1785 1 37275 13448 23575 23586 42464 42464 0.04914838706088176 RNLKVAKN 8 Unmodified _RNLKVAKN_ 0 0 0 nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3 nc|ENSG00000183423|Q3SXY7-2|LRIT3 nc|ENSG00000183423|Q3SXY7-2|LRIT3 MSMS UPN48_class_I_Rep_1 5 472.2567443847656 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 44.342 1 47.856 47.356 48.356 3.5132 0 0 0 0.40625 1 8429 8429 2.3027 0 1 37276 4996 23576 23587 42465 42465 0.1039228863688777 RNLLHHESL 9 Unmodified _RNLLHHESL_ 0 0 0 REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|210|2|anti-sense REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|210|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 559.8067626953125 2 559.806897 1117.59924 0.10722 6.0024E-05 -0.13137 -7.3541E-05 -0.024146 -1.3517E-05 559.8067635560307 26.9 0.66594 26.9 26.624 27.29 0 121 52 3 0 0 0 0.33654 1 4000 4000 11.64 0 1 115680 + 37277 30320 23577 23588 42466 42466 0.045144683146418174 RNLMCKVM 8 Unmodified _RNLMCKVM_ 0 0 0 REV__L1MEf_dup4789|chr7:5336758-5337337:+|3.51119064541879|0.0122388261931849|8.16|151.0|9|2|sense REV__L1MEf_dup4789|chr7:5336758-5337337:+|3.51119064541879|0.0122388261931849|8.16|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 497.7533264160156 2 497.753375 993.492198 NaN NaN NaN NaN NaN NaN NaN 82.821 1 82.821 82.321 83.321 0 0 0 0 0.40746 1 19640 19640 0.69038 0 1 + 37278 28644 23578 23589 42467 42467 -0.004808644872355217 RNLPVNFEVA 10 Unmodified _RNLPVNFEVA_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MSMS UPN48_class_I_Rep_3 7 579.8170776367188 2 579.81693 1157.61931 NaN NaN NaN NaN NaN NaN NaN 43.026 1 46.668 46.168 47.168 3.6415 0 0 0 0.53105 1 7957 7957 2.9952 0 1 37279 2454 23579 23590 42468 42468 0.0468021925460107 RNLRAAAA 8 Unmodified _RNLRAAAA_ 0 0 0 REV__ENSG00000137504|ENST00000527447|CREBZF REV__ENSG00000137504|ENST00000527447|CREBZF MULTI-MSMS UPN47_class_I_Rep_1 2 421.75140380859375 2 421.751393 841.488233 0.030413 1.2827E-05 -0.093322 -3.9359E-05 -0.062909 -2.6532E-05 421.75128757832715 81.017 0.89459 84.504 84.187 85.082 3.4874 203 93 3 0 0 0 0.82752 1 20348 20348 0.69038 0 1 574670 + 37280 19236 23580 23591 42469 42469 0.06114873397211795 RNLRGNLKY 9 Unmodified _RNLRGNLKY_ 0 0 0 L1MC_dup351|chr1:176038887-176039541:+|1.0259167765159622|0.0087888332843904|6.87|151.0|5|1|sense L1MC_dup351|chr1:176038887-176039541:+|1.0259167765159622|0.0087888332843904|6.87|151.0|5|1|sense L1MC_dup351|chr1:176038887-176039541:+|1.0259167765159622|0.0087888332843904|6.87|151.0|5|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 567.32958984375 2 567.330539 1132.64652 0.4626 0.00026245 -1.237 -0.00070181 -0.77444 -0.00043937 567.3297059552087 85.484 0.14737 85.484 85.444 85.592 0 24 17 2 0 0 0 0.12235 1 20426 20426 4.756 0 1 338710 37281 11060 23581 23592 42470 42470 0.08550747585650242 RNLVNHIL 8 Unmodified _RNLVNHIL_ 0 0 0 HAL1_dup22425|chr22:17092689-17093414:-|2.7291835073764457|0.1331985697434963|4.36|151.0|37|2|anti-sense HAL1_dup22425|chr22:17092689-17093414:-|2.7291835073764457|0.1331985697434963|4.36|151.0|37|2|anti-sense HAL1_dup22425|chr22:17092689-17093414:-|2.7291835073764457|0.1331985697434963|4.36|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_2 6 489.7970275878906 2 489.795801 977.577048 NaN NaN NaN NaN NaN NaN NaN 83.981 1 87.662 87.162 88.162 3.6814 0 0 0 0.40604 1 19979 19979 2.5775 0 1 37282 7872 23582 23593 42471 42471 0.08736288636896461 RNLVPVQR 8 Unmodified _RNLVPVQR_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS UPN46_class_I_Rep_3 1 491.30035400390625 2 491.30125 980.587947 0.047924 2.3545E-05 -0.21545 -0.00010585 -0.16752 -8.2305E-05 491.30113048478705 30.507 0.77275 30.507 30.17 30.943 0 108 61 2 0 0 0 0.82752 4 4917 4917;4957;5000;5043 39.957 16.809 1 161180 37283 5101 23583 23594 42472;42473;42474;42475 42472 0.09687691011174593 RNMNLHIP 8 Unmodified _RNMNLHIP_ 0 0 0 L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|54|3|sense L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|54|3|sense L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|54|3|sense MSMS UPN47_class_I_Rep_1 2 497.7653503417969 2 497.766186 993.517819 NaN NaN NaN NaN NaN NaN NaN 58.154 1 61.591 61.091 62.091 3.437 0 0 0 0.40581 1 13407 13407 2.8892 0 1 37284 9000 23584 23595 42476 42476 0.02080069351052316 RNMYKVRK 8 Unmodified _RNMYKVRK_ 0 0 0 REV__L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|114|2|sense REV__L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|114|2|sense MSMS UPN48_class_I_Rep_3 7 547.8158569335938 2 547.81621 1093.61787 NaN NaN NaN NaN NaN NaN NaN 18.614 1 22.202 21.702 22.702 3.5874 0 0 0 0.40746 1 1258 1258 0.69038 0 1 + 37285 29667 23585 23596 42477 42477 0.07480306684851712 RNNAKRKIK 9 Unmodified _RNNAKRKIK_ 0 0 0 REV__L1ME3G_dup13492|chr15:72476933-72477156:-|1.789422199875334|0.0112550235063625|7.31|151.0|6|2|sense REV__L1ME3G_dup13492|chr15:72476933-72477156:-|1.789422199875334|0.0112550235063625|7.31|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 564.359130859375 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 94.501 1 94.501 94.001 95.001 0 0 0 0 0.4007 1 22921 22921 0.52476 0 1 + 37286 28182 23586 23597 42478 42478 0.14642429230934795 RNNPLVHHK 9 Unmodified _RNNPLVHHK_ 0 0 0 HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|122|2|sense;HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|166|3|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|122|2|sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|122|2|sense MSMS UPN48_class_I_Rep_2 6 557.8148193359375 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 90.4 1 94.147 93.647 94.647 3.7471 0 0 0 0.39518 1 21544 21544 1.8442 0 1 37287 8045 23587 23598 42479 42479 0.06329594271414862 RNNWKTLFH 9 Unmodified _RNNWKTLFH_ 0 0 0 ENSG00000109066.14,TMEM104,chr17,+,I5.1,74788871,74790199|35|5.45|7|intron;ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066.14,TMEM104,chr17,+,I5.1,74788871,74790199|35|5.45|7|intron ENSG00000109066.14,TMEM104,chr17,+,I5.1,74788871,74790199|35|5.45|7|intron MULTI-MSMS UPN48_class_I_Rep_2 6 405.88421630859375 3 405.884235 1214.63087 0.11238 4.5612E-05 -0.15769 -6.4005E-05 -0.045316 -1.8393E-05 405.8840991674358 65.263 1.4742 68.743 68.117 69.591 3.4792 180 104 3 0 0 0 0.49573 1 14828 14828 1.0715 0 1 362750 37288 1886 23588 23599 42480 42480 0.03214461068591845 RNNWYHPL 8 Unmodified _RNNWYHPL_ 0 0 0 L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|19|1|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|19|1|sense L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|19|1|sense MSMS UPN48_class_I_Rep_2 6 550.2742309570312 2 550.275232 1098.53591 NaN NaN NaN NaN NaN NaN NaN 42.376 1 46.134 45.634 46.634 3.7579 0 0 0 0.40738 1 7839 7839 0.79363 0 1 37289 14777 23589 23600 42481 42481 -0.009414724025873511 RNPISTKK 8 Unmodified _RNPISTKK_ 0 0 0 AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|2|1|sense;AluSp_dup34728|chr13:20020232-20020523:-|1.5967705832218049|0.3880288597249428|2.04|151.0|2|1|sense;AluSz6_dup31211|chr12:11818236-11818549:+|1.5968164787142451|0.010735136013637|7.22|151.0|1|1|sense;AluSp_dup40546|chr16:67996351-67996681:-|1.615772348680791|0.2828949939915569|2.51|151.0|2|1|sense;SVA_E_dup408|chr10:31969059-31970051:+|2.1912781003783|0.275459818795955|2.99|151.0|26|1|anti-sense;SVA_D_dup783|chrX:77765691-77767271:-|1.9252574159411555|0.3036489582849249|2.66|151.0|54|1|anti-sense;SVA_D_dup573|chr7:16789066-16791103:-|1.622213027879272|0.1036336733317189|3.97|150.0|74|2|anti-sense;SVA_D_dup1175|chr16:47180353-47182198:+|1.4893746077257617|0.1004229804959602|3.89|151.0|84|3|anti-sense;SVA_D_dup1063|chr14:49820620-49822305:+|2.5987914187498093|0.2547499240644474|3.35|151.0|47|1|anti-sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|2|1|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 472.2876281738281 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 111.6 1 115.27 114.77 115.77 3.6666 0 0 0 0.40643 1 26548 26548 2.0598 0 1 37290 235 23590 23601 42482 42482 0.08748582399982752 RNPSTYFFP 9 Unmodified _RNPSTYFFP_ 0 0 0 HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|200|1|anti-sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|200|1|anti-sense HERVL-int_dup1845|chr12:46861346-46866940:-|1.0201195943327137|0.0382866111835716|4.74|149.0|200|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.7749633789062 2 564.777274 1127.53999 NaN NaN NaN NaN NaN NaN NaN 22.983 1 26.734 26.234 27.234 3.7507 0 0 0 0.39518 1 2435 2435 1.8442 0.51471 1 37291 8357 23591 23602 42483 42483 -0.01867427699539803 RNQDNTVCH 9 Unmodified _RNQDNTVCH_ 0 0 0 Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|83|2|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|83|2|anti-sense Tigger1_dup6224|chr8:43165964-43167698:+|1.5831680388629052|0.2101501236320454|2.91|151.0|83|2|anti-sense MSMS UPN47_class_I_Rep_2 3 543.742919921875 2 543.740896 1085.46724 NaN NaN NaN NaN NaN NaN NaN 41.827 1 45.193 44.693 45.693 3.3655 0 0 0 0.39598 1 8468 8468 1.6526 0.32309 1 37292 33151 23592 23603 42484 42484 -0.07207504764619443 RNQEMLRYIQ 10 Unmodified _RNQEMLRYIQ_ 0 0 0 REV__L1PA7_dup1679|chr2:184613686-184615259:+|1.911626754561316|0.0065390184950288|8.19|147.0|4|1|sense REV__L1PA7_dup1679|chr2:184613686-184615259:+|1.911626754561316|0.0065390184950288|8.19|147.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 450.234619140625 3 450.903078 1349.6874 0.15291 6.8949E-05 0.41616 0.00018765 0.56907 0.0002566 451.2376873380964 99.991 0.05574 103.75 103.71 103.77 3.7575 9 7 2 0 0 0 0.84575 1 23752 23752 0.69767 0 1 60033 + 37293 29899 23593 23604 42485 42485 0.026547208429747116 RNQIDAIK 8 Unmodified _RNQIDAIK_ 0 0 0 L1PA3_dup4122|chr6:57334869-57340871:+|1.2884723371868338|0.0519221903419051|4.63|151.0|69|2|sense L1PA3_dup4122|chr6:57334869-57340871:+|1.2884723371868338|0.0519221903419051|4.63|151.0|69|2|sense L1PA3_dup4122|chr6:57334869-57340871:+|1.2884723371868338|0.0519221903419051|4.63|151.0|69|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2772216796875 2 479.277441 956.540328 0.11705 5.6102E-05 -0.23064 -0.00011054 -0.11359 -5.4441E-05 479.2771831640305 73.243 1.1706 76.629 75.892 77.063 3.3861 121 91 2 0 0 0 0.82752 1 17865 17865 0.69038 0 1 114560 37294 14263 23594 23605 42486 42486 0.06031992020302823 RNQKHGLFK 9 Unmodified _RNQKHGLFK_ 0 0 0 nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1 nc|ENSG00000165973|Q92832-2|NELL1 nc|ENSG00000165973|Q92832-2|NELL1 MSMS UPN48_class_I_Rep_2 6 564.3242797851562 2 564.325257 1126.63596 NaN NaN NaN NaN NaN NaN NaN 97.195 1 100.97 100.47 101.47 3.779 0 0 0 0.39518 1 23099 23099 1.8442 0.19162 1 37295 4210 23595 23606 42487 42487 0.07770764931228769 RNQKKGMKT 9 Unmodified _RNQKKGMKT_ 0 0 0 REV__L1PA2_dup2164|chr7:32682679-32688715:-|1.256117456056184|0.3788891291014142|1.73|148.0|81|2|sense REV__L1PA2_dup2164|chr7:32682679-32688715:-|1.256117456056184|0.3788891291014142|1.73|148.0|81|2|sense MSMS UPN46_class_I_Rep_3 1 545.810302734375 2 545.811125 1089.6077 NaN NaN NaN NaN NaN NaN NaN 90.942 1 90.942 90.442 91.442 0 0 0 0 0.38639 1 21943 21943 3.9444 0 1 + 37296 24002 23596 23607 42488 42488 0.06647698959636728 RNQKKGMKT 9 Unmodified _RNQKKGMKT_ 0 0 0 REV__L1PA2_dup2164|chr7:32682679-32688715:-|1.256117456056184|0.3788891291014142|1.73|148.0|81|2|sense REV__L1PA2_dup2164|chr7:32682679-32688715:-|1.256117456056184|0.3788891291014142|1.73|148.0|81|2|sense MSMS UPN47_class_I_Rep_2 3 545.8112182617188 2 545.811125 1089.6077 NaN NaN NaN NaN NaN NaN NaN 85.496 1 88.929 88.429 89.429 3.4329 0 0 0 0.37476 1 21271 21271 6.7232 0 1 + 37297 24002 23596 23607 42489 42489 0.06647698959636728 RNQLFPKR 8 Unmodified _RNQLFPKR_ 0 0 0 ENST00000229214.8_1_12:75902094-75905340:-|nuORF ENST00000229214.8_1_12:75902094-75905340:-|nuORF ENST00000229214.8_1_12:75902094-75905340:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 529.8131713867188 2 529.814525 1057.6145 -0.34439 -0.00018247 -0.51891 -0.00027493 -0.86331 -0.00045739 529.8143365817253 23.781 0.6213 27.132 26.852 27.473 3.3509 67 48 2 0 0 0 0.82752 1 3163 3163 0.69038 0 1 69686 37298 5880 23597 23608 42490 42490 0.08799379902484361 RNREFTSEC 9 Unmodified _RNREFTSEC_ 0 0 0 ENST00000257177.8_1_1:52940582-52940678:-|nuORF ENST00000257177.8_1_1:52940582-52940678:-|nuORF ENST00000257177.8_1_1:52940582-52940678:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 571.2341918945312 2 571.256379 1140.49821 0.43608 0.00024911 -0.80755 -0.00046132 -0.37147 -0.0002122 571.255751790978 65.97 0.4818 69.155 68.926 69.408 3.1853 43 28 2 0 0 0 0.12207 1 15901 15901 5.7319 1.7875 1 68709 37299 5933 23598 23609 42491 42491 -0.06642351450364004 RNRFKKTR 8 Unmodified _RNRFKKTR_ 0 0 0 L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|10|1|sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|10|1|sense L1ME1_dup9563|chr5:55334770-55336627:-|1.1544085372851909|0.0599249955990828|4.27|150.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 553.3388061523438 2 553.338698 1104.66284 NaN NaN NaN NaN NaN NaN NaN 86.441 1 86.441 85.941 86.941 0 0 0 0 0.40746 1 20663 20663 0.69038 0.16561 1 37300 12456 23599 23610 42492 42492 0.11469873542409914 RNRGGYIY 8 Unmodified _RNRGGYIY_ 0 0 0 L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|46|2|sense L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|46|2|sense L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|46|2|sense MSMS UPN47_class_I_Rep_2 3 499.7619323730469 2 499.761958 997.509363 NaN NaN NaN NaN NaN NaN NaN 27.477 1 30.975 30.475 31.475 3.4986 0 0 0 0.40604 1 4130 4130 2.5775 0 1 37301 8699 23600 23611 42493 42493 0.010508387060895075 RNRGNCWII 9 Unmodified _RNRGNCWII_ 0 0 0 ENSG00000214842|ENST00000399080|RAD51AP2 ENSG00000214842|ENST00000399080|RAD51AP2 ENSG00000214842|ENST00000399080|RAD51AP2 MSMS UPN47_class_I_Rep_2 3 566.2970581054688 2 566.295642 1130.57673 NaN NaN NaN NaN NaN NaN NaN 56.504 1 59.804 59.304 60.304 3.3009 0 0 0 0.35339 1 12940 12940 7.9102 0.62092 1 37302 5623 23601 23612 42494 42494 0.016665456453893057 RNRHKKNR 8 Unmodified _RNRHKKNR_ 0 0 0 REV__L1MEd_dup11700|chr9:6464900-6465738:-|1.460657299958288|0.0154254608695343|6.57|151.0|2|1|sense REV__L1MEd_dup11700|chr9:6464900-6465738:-|1.460657299958288|0.0154254608695343|6.57|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 554.83349609375 2 554.831572 1107.64859 NaN NaN NaN NaN NaN NaN NaN 78.76 1 82.206 81.706 82.706 3.4456 0 0 0 0.40746 1 19593 19593 0.69038 0 1 + 37303 28507 23602 23613 42495 42495 0.09907221114121967 RNRHKKNR 8 Unmodified _RNRHKKNR_ 0 0 0 REV__L1MEd_dup11700|chr9:6464900-6465738:-|1.460657299958288|0.0154254608695343|6.57|151.0|2|1|sense REV__L1MEd_dup11700|chr9:6464900-6465738:-|1.460657299958288|0.0154254608695343|6.57|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 554.8336791992188 2 554.831572 1107.64859 NaN NaN NaN NaN NaN NaN NaN 78.912 1 82.267 81.767 82.767 3.3554 0 0 0 0.40746 1 19619 19619 0.69038 0 1 + 37304 28507 23602 23613 42496 42496 0.09907221114121967 RNRHQMLH 8 Unmodified _RNRHQMLH_ 0 0 0 L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|70|2|sense L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|70|2|sense L1PA8_dup4780|chrX:57185556-57188774:-|1.0109981826141132|0.0309586183186539|5.03|151.0|70|2|sense MSMS UPN48_class_I_Rep_3 7 546.284912109375 2 546.285608 1090.55666 NaN NaN NaN NaN NaN NaN NaN 35.916 1 39.583 39.083 40.083 3.6667 0 0 0 0.40625 1 5882 5882 2.3027 0.4585 1 37305 14947 23603 23614 42497 42497 0.01500794705430053 RNRIGQKA 8 Unmodified _RNRIGQKA_ 0 0 0 MER39B_dup382|chr5:150704666-150705103:-|1.40505993305447|0.279518551117507|2.33|151.0|26|2|anti-sense MER39B_dup382|chr5:150704666-150705103:-|1.40505993305447|0.279518551117507|2.33|151.0|26|2|anti-sense MER39B_dup382|chr5:150704666-150705103:-|1.40505993305447|0.279518551117507|2.33|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7958679199219 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 56.137 1 59.438 58.938 59.938 3.3009 0 0 0 0.4044 1 12827 12827 4.756 1.1595 1 37306 15932 23604 23615 42498 42498 0.0787823383433306 RNRIGVGV 8 Unmodified _RNRIGVGV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS UPN48_class_I_Rep_1 5 435.7670593261719 2 435.767043 869.519533 -0.024577 -1.071E-05 0.023149 1.0088E-05 -0.0014273 -6.2198E-07 435.7669555585428 78.887 0.87217 82.422 81.991 82.863 3.5352 211 108 3 0 0 0 0.82752 1 18925 18925 0 0 1 398400 37307 1196 23605 23616 42499 42499 0.07955446431344626 RNRKFQQI 8 Unmodified _RNRKFQQI_ 0 0 0 L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|96|3|sense L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|96|3|sense L1MB7_dup17211|chr14:30565960-30568962:-|1.4719675489142066|0.0227565532693752|6.02|151.0|96|3|sense MSMS UPN48_class_I_Rep_3 7 545.317138671875 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 78.397 1 82.019 81.519 82.519 3.6216 0 0 0 0.40746 1 18556 18556 0.69038 0 1 37308 10742 23606 23617 42500 42500 0.07954478414194455 RNRKIHPK 8 Unmodified _RNRKIHPK_ 0 0 0 L1M3_dup4526|chr11:14651924-14652533:-|1.4322195247207357|0.0291823722716545|5.62|149.0|20|3|sense;L1MB3_dup430|chr1:51383718-51384290:+|1.8196180646271785|0.0109223032781812|7.38|151.0|6|1|sense;L1MB3_dup16909|chr22:49807163-49808710:+|2.736038678632608|0.2769566295885632|3.3|151.0|39|3|sense;L1MB3_dup3186|chr3:56574812-56576287:-|1.0317757640258078|0.0636676630573475|4.02|151.0|3|1|sense L1M3_dup4526|chr11:14651924-14652533:-|1.4322195247207357|0.0291823722716545|5.62|149.0|20|3|sense L1M3_dup4526|chr11:14651924-14652533:-|1.4322195247207357|0.0291823722716545|5.62|149.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 524.827392578125 2 524.827966 1047.64138 NaN NaN NaN NaN NaN NaN NaN 94.496 1 94.496 93.996 94.996 0 0 0 0 0.40746 1 22920 22920 0.69038 0 1 37309 8768 23607 23618 42501 42501 0.11946488513672193 RNRKVHNK 8 Unmodified _RNRKVHNK_ 0 0 0 REV__L1MEc_dup15139|chr14:71013612-71015523:+|2.7000411285334693|0.1725456156860152|3.97|151.0|59|3|sense REV__L1MEc_dup15139|chr14:71013612-71015523:+|2.7000411285334693|0.1725456156860152|3.97|151.0|59|3|sense MSMS UPN47_class_I_Rep_1 2 526.3150024414062 2 526.315223 1050.61589 NaN NaN NaN NaN NaN NaN NaN 73.132 1 76.518 76.018 77.018 3.3861 0 0 0 0.40746 1 17939 17939 0.69038 0 1 + 37310 28386 23608 23619 42502 42502 0.09261013991272193 RNRLLEQL 8 Unmodified _RNRLLEQL_ 0 0 0 REV__L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|20|2|sense REV__L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|20|2|sense MSMS UPN47_class_I_Rep_1 2 521.3131103515625 2 521.311815 1040.60908 NaN NaN NaN NaN NaN NaN NaN 86.264 1 89.879 89.379 90.379 3.6153 0 0 0 0.39615 1 21546 21546 9.3831 0 1 + 37311 28283 23609 23620 42503 42503 0.09039656320032918 RNRLSLLV 8 Unmodified _RNRLSLLV_ 0 0 0 ENST00000481707.5_1_1:192127767-192130605:+|nuORF;ENSG00000150681|ENST00000367460|RGS18 ENST00000481707.5_1_1:192127767-192130605:+|nuORF ENST00000481707.5_1_1:192127767-192130605:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.7875671386719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 46.397 1 50.097 49.597 50.597 3.6999 0 0 0 0.40746 1 9836 9836 0.69038 0 1 37312 3568 23610 23621 42504 42504 0.12232861671009232 RNRLSLLV 8 Unmodified _RNRLSLLV_ 0 0 0 ENST00000481707.5_1_1:192127767-192130605:+|nuORF;ENSG00000150681|ENST00000367460|RGS18 ENST00000481707.5_1_1:192127767-192130605:+|nuORF ENST00000481707.5_1_1:192127767-192130605:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.8116149902344 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.404 1 68.76 68.26 69.26 3.3557 0 0 0 0.40746 1 15599 15599 0.69038 0 1 37313 3568 23610 23621 42505 42505 0.12232861671009232 RNRLSLLV 8 Unmodified _RNRLSLLV_ 0 0 0 ENST00000481707.5_1_1:192127767-192130605:+|nuORF;ENSG00000150681|ENST00000367460|RGS18 ENST00000481707.5_1_1:192127767-192130605:+|nuORF ENST00000481707.5_1_1:192127767-192130605:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.811451 969.608348 0.13559 6.5872E-05 0.632 0.00030703 0.76759 0.0003729 485.81171443736446 65.512 0.4678 68.692 68.672 69.14 3.1795 43 27 2 0 0 0 0.82752 1 15751 15751 0.69038 0 1 4491500 37314 3568 23610 23621 42506 42506 0.12232861671009232 RNRPFSPL 8 Unmodified _RNRPFSPL_ 0 0 0 ENST00000434401.1_1_20:43594069-43594802:-|nuORF ENST00000434401.1_1_20:43594069-43594802:-|nuORF ENST00000434401.1_1_20:43594069-43594802:-|nuORF MSMS UPN48_class_I_Rep_2 6 493.78173828125 2 493.780151 985.545748 NaN NaN NaN NaN NaN NaN NaN 77.309 1 80.921 80.421 81.421 3.6116 0 0 0 0.40157 1 18290 18290 7.2892 0 1 37315 6743 23611 23622 42507 42507 0.05239715602795059 RNRPRKHR 8 Unmodified _RNRPRKHR_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS UPN46_class_I_Rep_3 1 560.3407592773438 2 560.339564 1118.66457 0.43724 0.000245 0.76843 0.00043058 1.2057 0.00067559 560.3402871579134 99.118 0.053329 99.118 99.084 99.137 0 10 6 2 0 0 0 0.82752 1 24142 24142 0.79363 0 1 103020 37316 885 23612 23623 42508 42508 0.10998927351010934 RNRPRKHR 8 Unmodified _RNRPRKHR_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MSMS UPN47_class_I_Rep_3 4 560.3400268554688 2 560.339564 1118.66457 NaN NaN NaN NaN NaN NaN NaN 95.276 1 98.685 98.185 99.185 3.4095 0 0 0 0.40738 1 23688 23688 0.79363 0 1 37317 885 23612 23623 42509 42509 0.10998927351010934 RNRQKKKIG 9 Unmodified _RNRQKKKIG_ 0 0 0 L1MEc_dup189|chr1:32151093-32151739:-|1.0648980385685625|0.0086440090500991|6.94|151.0|2|1|sense L1MEc_dup189|chr1:32151093-32151739:-|1.0648980385685625|0.0086440090500991|6.94|151.0|2|1|sense L1MEc_dup189|chr1:32151093-32151739:-|1.0648980385685625|0.0086440090500991|6.94|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 564.3594360351562 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 82.486 1 85.823 85.323 86.323 3.337 0 0 0 0.4007 1 20672 20672 0.52476 0 1 37318 13074 23613 23624 42510 42510 0.14642429230934795 RNRQLNNG 8 Unmodified _RNRQLNNG_ 0 0 0 L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|65|3|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|65|3|sense L1MB7_dup4556|chr3:123230146-123231956:+|5.374696632681659|0.3155112261545197|4.09|151.0|65|3|sense MSMS UPN47_class_I_Rep_2 3 486.2752685546875 2 486.260114 970.505674 NaN NaN NaN NaN NaN NaN NaN 65.745 1 69.002 68.502 69.502 3.2574 0 0 0 0.40625 1 15751 15751 2.3027 0 1 37319 10835 23614 23625 42511 42511 0.019241689322370803 RNRQRIRF 8 Unmodified _RNRQRIRF_ 0 0 0 REV__ENST00000367521.5_1_1:183906707-183906932:-|nuORF REV__ENST00000367521.5_1_1:183906707-183906932:-|nuORF MSMS UPN48_class_I_Rep_3 7 573.3428344726562 2 573.341772 1144.66899 NaN NaN NaN NaN NaN NaN NaN 37.979 1 41.639 41.139 42.139 3.6595 0 0 0 0.40746 1 6468 6468 0.69038 0.088878 1 + 37320 21930 23615 23626 42512 42512 0.10244391773926509 RNRRCYWI 8 Unmodified _RNRRCYWI_ 0 0 0 ENST00000367188.4_1_1:204375292-204375355:-|nuORF ENST00000367188.4_1_1:204375292-204375355:-|nuORF ENST00000367188.4_1_1:204375292-204375355:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 583.8031005859375 2 583.803634 1165.59272 -0.075477 -4.4064E-05 -1.0888 -0.00063562 -1.1642 -0.00067968 583.8031406469886 28.029 0.44929 31.796 31.693 32.143 3.7662 39 32 2 0 0 0 0.82752 1 4245 4245 0.79363 0.19213 1 68922 37321 6348 23616 23627 42513 42513 0.016542518822916463 RNRRCYWI 8 Unmodified _RNRRCYWI_ 0 0 0 ENST00000367188.4_1_1:204375292-204375355:-|nuORF ENST00000367188.4_1_1:204375292-204375355:-|nuORF ENST00000367188.4_1_1:204375292-204375355:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 583.8034057617188 2 583.803634 1165.59272 -0.20628 -0.00012043 -1.1417 -0.00066655 -1.348 -0.00078698 583.8031281746207 28.531 0.68739 31.865 31.525 32.212 3.3338 75 59 2 0 0 0 0.82752 1 4457 4457 0.79363 0.19213 1 60660 37322 6348 23616 23627 42514 42514 0.016542518822916463 RNRRHQFW 8 Unmodified _RNRRHQFW_ 0 0 0 REV__ENST00000464624.6_1_20:57428320-57466719:+|nuORF REV__ENST00000464624.6_1_20:57428320-57466719:+|nuORF MSMS UPN46_class_I_Rep_3 1 600.3175659179688 2 600.318297 1198.62204 NaN NaN NaN NaN NaN NaN NaN 91.424 1 91.424 90.924 91.924 0 0 0 0 0.40746 1 22084 22084 0.69038 0.088878 1 + 37323 22458 23617 23628 42515 42515 0.03067532222803493 RNRRLTVN 8 Unmodified _RNRRLTVN_ 0 0 0 ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|1|intron;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|2|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|6|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|3|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|5|intron;ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|7|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron ENSG00000178209.16,PLEC,chr8,-,I9.1,143942525,143943778|26|4.84|4|intron MULTI-SECPEP UPN47_class_I_Rep_1 2 514.3289794921875 2 514.807231 1027.59991 0.22929 0.00011804 -0.36952 -0.00019023 -0.14023 -7.2191E-05 514.8077608303948 65.824 0.081985 69.181 69.139 69.221 3.3576 7 4 2 0 0 0 0.72333 1 15714 15714 6.2058 0 1 73764 37324 4818 23618 23629 42516 42516 0.08721307754353802 RNRRQWSQ 8 Unmodified _RNRRQWSQ_ 0 0 0 ENST00000218056.9_1_X:48455906-48456035:+|nuORF ENST00000218056.9_1_X:48455906-48456035:+|nuORF ENST00000218056.9_1_X:48455906-48456035:+|nuORF MSMS UPN47_class_I_Rep_1 2 565.7421875 2 565.799937 1129.58532 NaN NaN NaN NaN NaN NaN NaN 17.498 1 21.048 20.548 21.548 3.5504 0 0 0 0.40753 1 1315 1315 0.6015 0 1 37325 5868 23619 23630 42517 42517 0.025712356062285835 RNRSFLGI 8 Unmodified _RNRSFLGI_ 0 0 0 L1MCc_dup1248|chr5:150706273-150706606:-|1.8573168268240112|0.1465539410915554|3.66|151.0|18|1|anti-sense L1MCc_dup1248|chr5:150706273-150706606:-|1.8573168268240112|0.1465539410915554|3.66|151.0|18|1|anti-sense L1MCc_dup1248|chr5:150706273-150706606:-|1.8573168268240112|0.1465539410915554|3.66|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7803955078125 2 481.780151 961.545748 -0.20382 -9.8197E-05 -0.42282 -0.00020371 -0.62664 -0.0003019 481.7798419466246 21.963 0.83426 25.387 25.139 25.973 3.4241 114 84 2 0 0 0 0.82752 1 2613 2613 0.79363 0 1 83028 37326 11857 23620 23631 42518 42518 0.06343715602793054 RNRTVEVF 8 Unmodified _RNRTVEVF_ 0 0 0 ENST00000546525.5_1_6:169959876-170034596:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27 ENST00000546525.5_1_6:169959876-170034596:-|nuORF ENST00000546525.5_1_6:169959876-170034596:-|nuORF MSMS UPN47_class_I_Rep_2 3 510.7809143066406 2 510.78289 1019.55123 NaN NaN NaN NaN NaN NaN NaN 54.965 1 58.276 57.776 58.776 3.3102 0 0 0 0.40364 1 12469 12469 5.7604 2.8712 1 37327 5054 23621 23632 42519 42519 0.04223394394614388 RNSCKLIRKR 10 Unmodified _RNSCKLIRKR_ 0 0 0 L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|99|2|sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|99|2|sense L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|99|2|sense MSMS UPN47_class_I_Rep_2 3 637.3865356445312 2 637.385323 1272.75609 NaN NaN NaN NaN NaN NaN NaN 102.41 1 105.93 105.43 106.43 3.5151 0 0 0 0.53105 1 24935 24935 0.40072 0 1 37328 12465 23622 23633 42520 42520 0.13062429933324893 RNSCNNFIY 9 Unmodified _RNSCNNFIY_ 0 0 0 ENST00000585357.1_1_19:38780610-38781349:+|nuORF;nc|ENSG00000167642|O43291-2|SPINT2;ENSG00000167642|ENST00000301244|SPINT2 ENST00000585357.1_1_19:38780610-38781349:+|nuORF ENST00000585357.1_1_19:38780610-38781349:+|nuORF MSMS UPN48_class_I_Rep_1 5 565.7565307617188 2 565.756015 1129.49748 NaN NaN NaN NaN NaN NaN NaN 117.88 1 121.5 121 122 3.6215 0 0 0 0.39518 1 28735 28735 1.8442 0 1 37329 4318 23623 23634 42521 42521 -0.06209146099422469 RNSKRNLFV 9 Unmodified _RNSKRNLFV_ 0 0 0 Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|62|2|sense Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|62|2|sense Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|62|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.3299560546875 2 567.330539 1132.64652 0.51519 0.00029228 -0.44339 -0.00025155 0.071804 4.0737E-05 567.3301540525977 81.431 0.59148 84.815 84.564 85.155 3.3839 108 67 2 0 0 0 0.49026 1 20325 20325 1.6526 0 1 138870 37330 7970 23624 23635 42522 42522 0.08550747585650242 RNSKRNLFV 9 Unmodified _RNSKRNLFV_ 0 0 0 Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|62|2|sense Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|62|2|sense Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|62|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.8324584960938 2 567.330539 1132.64652 0.48433 0.00027478 -0.24155 -0.00013704 0.24278 0.00013774 567.3302555360166 81.524 0.27554 85.18 85.041 85.316 3.6567 47 32 2 0 0 0 0.49026 1 19372 19372 1.6526 1.6526 1 264220 37331 7970 23624 23635 42523 42523 0.08550747585650242 RNSWWQYK 8 Unmodified _RNSWWQYK_ 0 0 0 REV__L1MC5a_dup15874|chr19:38132948-38133505:-|1.423092395785832|0.0511977358892761|4.8|150.0|8|1|sense REV__L1MC5a_dup15874|chr19:38132948-38133505:-|1.423092395785832|0.0511977358892761|4.8|150.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 584.2888793945312 2 584.28834 1166.56213 NaN NaN NaN NaN NaN NaN NaN 67.472 1 70.663 70.163 71.163 3.1914 0 0 0 0.40738 1 16338 16338 0.79363 0 1 + 37332 27141 23625 23636 42524 42524 -0.014492032311181902 RNSYRRRLKKR 11 Unmodified _RNSYRRRLKKR_ 0 0 0 HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|39|2|sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|39|2|sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|39|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.9847717285156 3 511.650075 1531.92839 0.33046 0.00016908 -0.14948 -7.6483E-05 0.18098 9.2598E-05 511.98435057342294 107.15 0.41688 110.68 110.42 110.84 3.5382 206 58 4 0 0 0 0.68583 1 26109 26109 0 0 1 2682600 37333 8275 23626 23637 42525 42525 0.18370717665038683 RNTILHPLR 9 Unmodified _RNTILHPLR_ 0 0 0 L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3407592773438 2 560.340907 1118.66726 0.6348 0.0003557 -1.2396 -0.00069459 -0.60479 -0.00033889 560.3402189298998 94.435 0.23003 97.907 97.799 98.029 3.472 41 32 2 0 0 0 0.48643 1 23286 23286 2.0598 0 1 115490 37334 10797 23627 23638 42526 42526 0.11267337965296065 RNTILHPLR 9 Unmodified _RNTILHPLR_ 0 0 0 L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 560.340907 1118.66726 0.6348 0.0003557 -1.2396 -0.00069459 -0.60479 -0.00033889 560.3402189298998 94.435 0.23003 97.907 97.799 98.029 3.472 -0.05141 0.00012038 NaN 2.0598 41 32 2 NaN NaN NaN NaN 0 NaN NaN 0 115490 37335 10797 23627 23638 0.11267337965296065 RNTILHPLR 9 Unmodified _RNTILHPLR_ 0 0 0 L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense L1MB7_dup21478|chr19:48457986-48458514:-|2.404076337696573|0.3994828693872385|2.59|151.0|7|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 560.340907 1118.66726 0.50355 0.00028216 -0.57551 -0.00032248 -0.071959 -4.0321E-05 560.3406654629548 94.559 0.089546 97.965 97.882 97.971 3.4068 0.0072326 0.00086461 NaN 2.0598 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 445350 37336 10797 23627 23638 0.11267337965296065 RNTKLPPLPG 10 Unmodified _RNTKLPPLPG_ 0 0 0 nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2 nc|ENSG00000074047|P10070-4|GLI2 nc|ENSG00000074047|P10070-4|GLI2 MULTI-SECPEP UPN48_class_I_Rep_1 5 547.3069458007812 2 546.82984 1091.64513 0.43872 0.0002399 -1.1654 -0.00063725 -0.72663 -0.00039735 546.8296556984568 46.462 0.12899 49.982 49.875 50.004 3.5192 10 6 2 0 0 0 0.84575 1 9062 9062 3.5965 1.7523 1 73401 37337 1124 23628 23639 42527 42527 0.10297113496881138 RNTLNWTSIK 10 Unmodified _RNTLNWTSIK_ 0 0 0 REV__L1M5_dup4563|chr2:24734322-24734512:+|1.0428347067153572|0.011899096851138|6.45|151.0|2|1|sense REV__L1M5_dup4563|chr2:24734322-24734512:+|1.0428347067153572|0.011899096851138|6.45|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 616.8419189453125 2 616.840936 1231.66732 NaN NaN NaN NaN NaN NaN NaN 76.228 1 79.631 79.131 80.131 3.4034 0 0 0 0.53105 1 18853 18853 2.4985 0.43874 1 + 37338 24680 23629 23640 42528 42528 0.06075293174649232 RNTRIVPRRQ 10 Unmodified _RNTRIVPRRQ_ 0 0 0 L1MEf_dup7531|chr10:75555208-75557031:+|3.684245799044993|0.0276401839204927|7.06|150.0|43|2|sense L1MEf_dup7531|chr10:75555208-75557031:+|3.684245799044993|0.0276401839204927|7.06|150.0|43|2|sense L1MEf_dup7531|chr10:75555208-75557031:+|3.684245799044993|0.0276401839204927|7.06|150.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 432.59759521484375 3 432.597088 1294.76943 NaN NaN NaN NaN NaN NaN NaN 104.18 1 104.18 103.68 104.68 0 0 0 0 0.53105 1 25441 25441 0.62683 0 1 37339 13319 23630 23641 42529 42529 0.13384004036925035 RNVAQLAQ 8 Unmodified _RNVAQLAQ_ 0 0 0 REV__ENST00000568709.5_1_16:88722865-88725108:-|nuORF REV__ENST00000568709.5_1_16:88722865-88725108:-|nuORF MSMS UPN46_class_I_Rep_3 1 450.2565002441406 2 450.256508 898.498464 NaN NaN NaN NaN NaN NaN NaN 75.852 1 75.852 75.352 76.352 0 0 0 0 0.40625 1 17662 17662 2.3027 0 1 + 37340 23078 23631 23642 42530 42530 0.04515436331791989 RNVKIVLC 8 Unmodified _RNVKIVLC_ 0 0 0 REV__ERVL-B4-int_dup3336|chr14:91016687-91018315:+|1.1283165732316445|0.0125212477698605|6.49|150.0|41|3|sense REV__ERVL-B4-int_dup3336|chr14:91016687-91018315:+|1.1283165732316445|0.0125212477698605|6.49|150.0|41|3|sense MSMS UPN48_class_I_Rep_1 5 472.62689208984375 2 472.78913 943.563706 NaN NaN NaN NaN NaN NaN NaN 88.156 1 91.779 91.279 92.279 3.6229 0 0 0 0.40738 1 21143 21143 0.79363 0 1 + 37341 23264 23632 23643 42531 42531 0.08966714533278264 RNVQEAWLAFG 11 Unmodified _RNVQEAWLAFG_ 0 0 0 Tigger1_dup5094|chr6:105291750-105293659:-|1.4185256957566836|0.2247428986415822|2.66|151.0|24|2|sense Tigger1_dup5094|chr6:105291750-105293659:-|1.4185256957566836|0.2247428986415822|2.66|151.0|24|2|sense Tigger1_dup5094|chr6:105291750-105293659:-|1.4185256957566836|0.2247428986415822|2.66|151.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 645.83349609375 2 645.833111 1289.65167 NaN NaN NaN NaN NaN NaN NaN 61.211 1 64.689 64.189 65.189 3.4785 0 0 0 0.38417 1 13579 13579 2.9952 0.26005 1 37342 33115 23633 23644 42532 42532 0.01843006657600199 RNVRLVLKH 9 Unmodified _RNVRLVLKH_ 0 0 0 L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|11|1|sense L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|11|1|sense L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 567.8660888671875 2 567.864549 1133.71454 NaN NaN NaN NaN NaN NaN NaN 48.612 1 52.241 51.741 52.741 3.6291 0 0 0 0.39518 1 9671 9671 1.8442 0.19162 1 37343 11867 23634 23645 42533 42533 0.1530361723630449 RNVSLNKL 8 Unmodified _RNVSLNKL_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|78|2|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|78|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.28814697265625 2 472.287808 942.561064 0.24567 0.00011603 0.029108 1.3747E-05 0.27478 0.00012977 472.2877069238954 91.45 0.10841 91.45 91.391 91.499 0 11 9 2 0 0 0 0.82752 1 22097 22097 0.79363 0 1 93153 + 37344 23835 23635 23646 42534 42534 0.08748582400005489 RNVSLNKL 8 Unmodified _RNVSLNKL_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|78|2|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|78|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 472.287808 942.561064 0.096698 4.5669E-05 -0.0056342 -2.661E-06 0.091063 4.3008E-05 472.287811199593 87.751 0.1127 91.37 91.312 91.425 3.6187 -0.0037992 -5.9968E-05 NaN 0.79363 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 60114 + 37345 23835 23635 23646 0.08748582400005489 RNWKGIAI 8 Unmodified _RNWKGIAI_ 0 0 0 nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6;ENST00000462622.5_1_7:154002507-154172193:+|nuORF;ENST00000496611.1_1_7:154002507-154378881:+|nuORF;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10 nc|ENSG00000130226|P42658-2|DPP6 nc|ENSG00000130226|P42658-2|DPP6 MSMS UPN47_class_I_Rep_1 2 479.28424072265625 2 479.285069 956.555585 NaN NaN NaN NaN NaN NaN NaN 65.269 1 68.625 68.125 69.125 3.3557 0 0 0 0.40404 1 15557 15557 5.2307 0.47466 1 37346 2646 23636 23647 42535 42535 0.07556903608167431 RNWKGIAI 8 Unmodified _RNWKGIAI_ 0 0 0 nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6;ENST00000462622.5_1_7:154002507-154172193:+|nuORF;ENST00000496611.1_1_7:154002507-154378881:+|nuORF;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10 nc|ENSG00000130226|P42658-2|DPP6 nc|ENSG00000130226|P42658-2|DPP6 MULTI-SECPEP UPN47_class_I_Rep_2 3 479.7638244628906 2 479.285069 956.555585 0.088264 4.2304E-05 -1.7483 -0.00083796 -1.6601 -0.00079565 479.2843080447516 65.729 0.21917 68.985 68.923 69.142 3.2556 15 9 2 0 0 0 0.72333 1 15763 15763 2.5775 0.27475 1 80263 37347 2646 23636 23647 42536 42536 0.07556903608167431 RNWTPSLEL 9 Unmodified _RNWTPSLEL_ 0 0 0 L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|183|3|sense L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|183|3|sense L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|183|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 557.8507080078125 2 558.29583 1114.57711 0.27133 0.00015149 -0.31045 -0.00017332 -0.039111 -2.1836E-05 558.2957433320511 54.522 0.04649 58.091 58.078 58.125 3.5694 5 3 2 0 0 0 0.12099 1 11476 11476 6.7232 2.7788 1 31759 37348 14948 23637 23648 42537 42537 0.024402438462402642 RNWVAVPP 8 Unmodified _RNWVAVPP_ 0 0 0 ENST00000560875.1_1_14:24616005-24616727:+|nuORF ENST00000560875.1_1_14:24616005-24616727:+|nuORF ENST00000560875.1_1_14:24616005-24616727:+|nuORF MSMS UPN48_class_I_Rep_2 6 469.7657775878906 2 469.763969 937.513385 NaN NaN NaN NaN NaN NaN NaN 41.556 1 45.307 44.807 45.807 3.7508 0 0 0 0.40364 1 7600 7600 5.7604 0.52976 1 37349 7457 23638 23649 42538 42538 0.04212928199797261 RNYISIKS 8 Unmodified _RNYISIKS_ 0 0 0 L1MB7_dup4150|chr3:50027335-50027856:-|3.9796926234656103|0.032472194666014|6.94|151.0|28|2|anti-sense L1MB7_dup4150|chr3:50027335-50027856:-|3.9796926234656103|0.032472194666014|6.94|151.0|28|2|anti-sense L1MB7_dup4150|chr3:50027335-50027856:-|3.9796926234656103|0.032472194666014|6.94|151.0|28|2|anti-sense MSMS UPN47_class_I_Rep_2 3 490.7793884277344 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 20.762 1 24.17 23.67 24.67 3.4074 0 0 0 0.40746 1 2212 2212 0.69038 0 1 37350 10830 23639 23650 42539 42539 0.05448876163097793 RNYKITRR 8 Unmodified _RNYKITRR_ 0 0 0 L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|28|1|sense L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|28|1|sense L1MA4A_dup2380|chr6:83901661-83904692:-|1.0872794696292167|0.0156942755850219|6.11|151.0|28|1|sense MSMS UPN48_class_I_Rep_3 7 553.8304443359375 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 79.577 1 83.22 82.72 83.72 3.6423 0 0 0 0.40604 1 18871 18871 2.5775 0 1 37351 9766 23640 23651 42540 42540 0.09826167305504896 RNYLFKTLI 9 Unmodified _RNYLFKTLI_ 0 0 0 L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|60|3|anti-sense L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|60|3|anti-sense L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|60|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3482055664062 2 584.347866 1166.68118 0.31342 0.00018314 0.16397 9.5816E-05 0.47739 0.00027896 584.347771968341 32.174 0.092659 32.174 32.126 32.219 0 15 6 3 0 0 0 0.50015 1 5466 5466 0 0 1 316590 37352 9311 23641 23652 42541 42541 0.10450570673765469 RNYPGDQANY 10 Unmodified _RNYPGDQANY_ 0 0 0 REV__MER20_dup16275|chr21:34813079-34813276:+|2.9553508236272488|0.1721932923787008|4.1|151.0|5|3|sense REV__MER20_dup16275|chr21:34813079-34813276:+|2.9553508236272488|0.1721932923787008|4.1|151.0|5|3|sense MSMS UPN48_class_I_Rep_2 6 599.2684936523438 2 599.267801 1196.52105 NaN NaN NaN NaN NaN NaN NaN 30.558 1 34.193 33.693 34.693 3.6351 0 0 0 0.53105 1 4488 4488 1.4819 0 1 + 37353 31153 23642 23653 42542 42542 -0.06935009061226083 RNYPGDQANY 10 Unmodified _RNYPGDQANY_ 0 0 0 REV__MER20_dup16275|chr21:34813079-34813276:+|2.9553508236272488|0.1721932923787008|4.1|151.0|5|3|sense REV__MER20_dup16275|chr21:34813079-34813276:+|2.9553508236272488|0.1721932923787008|4.1|151.0|5|3|sense MSMS UPN48_class_I_Rep_2 6 599.26806640625 2 599.267801 1196.52105 NaN NaN NaN NaN NaN NaN NaN 30.924 1 34.559 34.059 35.059 3.6351 0 0 0 0.53105 1 4592 4592 2.9952 0.26005 1 + 37354 31153 23642 23653 42543 42543 -0.06935009061226083 RNYVTPVNR 9 Unmodified _RNYVTPVNR_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS UPN46_class_I_Rep_3 1 559.8068237304688 2 559.806897 1117.59924 0.10722 6.0024E-05 -0.13137 -7.3541E-05 -0.024146 -1.3517E-05 559.8067635560307 26.9 0.66594 26.9 26.624 27.29 0 121 52 3 0 0 0 0.0203 4 3924 3850;3887;3924;3962 63.227 25.052 1 115680 37355 4807 23643 23654 42544;42545;42546;42547 42546 0.045144683146418174 RPAATAAALT 10 Unmodified _RPAATAAALT_ 0 0 0 REV__ENSG00000000938.13,FGR,chr1,-,I1.1,27626570,27635064|52|17.42|1|intron REV__ENSG00000000938.13,FGR,chr1,-,I1.1,27626570,27635064|52|17.42|1|intron MSMS UPN48_class_I_Rep_3 7 471.7724914550781 2 471.771991 941.529429 NaN NaN NaN NaN NaN NaN NaN 117.86 1 121.47 120.97 121.97 3.6124 0 0 0 0.53105 1 28031 28031 0 0 1 + 37356 17507 23644 23655 42548 42548 0.05632589646006636 RPAATAAALT 10 Unmodified _RPAATAAALT_ 0 0 0 REV__ENSG00000000938.13,FGR,chr1,-,I1.1,27626570,27635064|52|17.42|1|intron REV__ENSG00000000938.13,FGR,chr1,-,I1.1,27626570,27635064|52|17.42|1|intron MSMS UPN48_class_I_Rep_3 7 471.77203369140625 2 471.771991 941.529429 NaN NaN NaN NaN NaN NaN NaN 119.28 1 122.85 122.35 123.35 3.566 0 0 0 0.53105 1 28352 28352 0 0 1 + 37357 17507 23644 23655 42549 42549 0.05632589646006636 RPAFLPPF 8 Unmodified _RPAFLPPF_ 0 0 0 ENSG00000122390.19,NAA60,chr16,+,I9.1,3472386,3476221|79|9.11|1|intron ENSG00000122390.19,NAA60,chr16,+,I9.1,3472386,3476221|79|9.11|1|intron ENSG00000122390.19,NAA60,chr16,+,I9.1,3472386,3476221|79|9.11|1|intron MSMS UPN48_class_I_Rep_3 7 472.77154541015625 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 45.203 1 48.841 48.341 49.341 3.6372 0 0 0 0.40738 1 8629 8629 0.79363 0 1 37358 2384 23645 23656 42550 42550 0.05395000347948553 RPAFVMKM 8 Unmodified _RPAFVMKM_ 0 0 0 ENST00000380191.8_1_10:5807813-5807927:-|nuORF ENST00000380191.8_1_10:5807813-5807927:-|nuORF ENST00000380191.8_1_10:5807813-5807927:-|nuORF MSMS UPN46_class_I_Rep_3 1 490.40435791015625 2 490.264433 978.514313 NaN NaN NaN NaN NaN NaN NaN 77.424 1 77.424 76.924 77.924 0 0 0 0 0.40625 1 18097 18097 2.3027 0.24298 1 37359 6486 23646 23657 42551 42551 0.024196832528446066 RPAGEALR 8 Unmodified _RPAGEALR_ 0 0 0 REV__ENST00000607047.1_1_8:38240229-38240670:+|nuORF REV__ENST00000607047.1_1_8:38240229-38240670:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.25091552734375 2 435.251226 868.487899 0.010806 4.7035E-06 -0.51076 -0.00022231 -0.49996 -0.00021761 435.25089279725137 71.439 1.1492 74.814 74.672 75.821 3.3751 114 88 2 0 0 0 0.82752 1 17698 17698 0.69038 0 1 215990 + 37360 23234 23647 23658 42552 42552 0.04839453677357142 RPAGNKLGT 9 Unmodified _RPAGNKLGT_ 0 0 0 REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 457.2643127441406 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.46869 1 18033 18033 3.9444 0 1 317760 + 37361 29490 23648 23659 42553 42553 0.05435722848869773 RPAKHQAAAT 10 Unmodified _RPAKHQAAAT_ 0 0 0 nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2 nc|ENSG00000115266|O95996-2|APC2 nc|ENSG00000115266|O95996-2|APC2 MULTI-SECPEP UPN48_class_I_Rep_3 7 525.7965087890625 2 525.793789 1049.57303 0.34406 0.00018091 -3.2203 -0.0016932 -2.8762 -0.0015123 525.7919127477386 30.543 0.1213 34.258 34.218 34.339 3.7146 17 14 2 0 0 0 0.84575 1 4411 4411 2.9952 0 1 50581 37362 2116 23649 23660 42554 42554 0.050221991431726565 RPALRRRQ 8 Unmodified _RPALRRRQ_ 0 0 0 ENST00000484302.3_1_17:46673508-46675147:-|nuORF ENST00000484302.3_1_17:46673508-46675147:-|nuORF ENST00000484302.3_1_17:46673508-46675147:-|nuORF MSMS UPN46_class_I_Rep_3 1 526.8307495117188 2 526.83104 1051.64753 NaN NaN NaN NaN NaN NaN NaN 99.326 1 99.326 98.826 99.826 0 0 0 0 0.40746 1 24194 24194 0.69038 0 1 37363 7021 23650 23661 42555 42555 0.12377006745191466 RPANPRWR 8 Unmodified _RPANPRWR_ 0 0 0 REV__nc|ENSG00000142186|Q96KG9-4|SCYL1 REV__nc|ENSG00000142186|Q96KG9-4|SCYL1 MSMS UPN48_class_I_Rep_3 7 526.7963256835938 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 112.36 1 116.02 115.52 116.52 3.6614 0 0 0 0.40625 1 26694 26694 2.3027 0 1 + 37364 32000 23651 23662 42556 42556 0.05505342445508177 RPAPAAAR 8 Unmodified _RPAPAAAR_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS UPN48_class_I_Rep_1 5 405.24017333984375 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 98.684 1 102.29 101.79 102.79 3.6065 0 0 0 0.4044 1 23817 23817 4.756 0 1 37365 4625 23652 23663 42557 42557 0.05487488368498816 RPAPAAAR 8 Unmodified _RPAPAAAR_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS UPN48_class_I_Rep_2 6 405.2398376464844 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 98.407 1 102.18 101.68 102.68 3.7707 0 0 0 0.40625 1 23378 23378 2.3027 0 1 37366 4625 23652 23663 42558 42558 0.05487488368498816 RPAPAAAR 8 Unmodified _RPAPAAAR_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS UPN48_class_I_Rep_2 6 405.2402038574219 2 405.240661 808.46677 NaN NaN NaN NaN NaN NaN NaN 98.582 1 102.35 101.85 102.85 3.7707 0 0 0 0.40625 1 23418 23418 2.3027 0 1 37367 4625 23652 23663 42559 42559 0.05487488368498816 RPAPCLLCFS 10 Unmodified _RPAPCLLCFS_ 0 0 0 REV__L1PA3_dup3723|chr5:119294045-119300263:-|5.738578586122925|0.0558010729143642|6.68|151.0|375|3|anti-sense REV__L1PA3_dup3723|chr5:119294045-119300263:-|5.738578586122925|0.0558010729143642|6.68|151.0|375|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.7955322265625 2 553.777905 1105.54126 NaN NaN NaN NaN NaN NaN NaN 58.792 1 61.958 61.458 62.458 3.1658 0 0 0 0.53105 1 13688 13688 6.2058 2.2614 1 + 37368 29534 23653 23664 42560 42560 -0.007292529266351266 RPAPRGGV 8 Unmodified _RPAPRGGV_ 0 0 0 L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense;L1PA5_dup7857|chr10:87525540-87531312:-|1.1808981152803928|0.0821756683294849|3.85|149.0|284|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.240478515625 2 405.240661 808.46677 0.046171 1.871E-05 0.27528 0.00011156 0.32146 0.00013027 405.2407001510096 79.658 0.8987 79.658 79.37 80.269 0 151 86 2 0 0 0 0.82752 1 18871 18871 2.3027 0 1 398320 37369 14491 23654 23665 42561 42561 0.054874883685215536 RPAPRGGV 8 Unmodified _RPAPRGGV_ 0 0 0 L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense;L1PA5_dup7857|chr10:87525540-87531312:-|1.1808981152803928|0.0821756683294849|3.85|149.0|284|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 405.2405090332031 2 405.240661 808.46677 -0.11069 -4.4856E-05 0.25963 0.00010521 0.14894 6.0357E-05 405.24071238768533 76.419 1.0994 79.929 79.51 80.61 3.5102 309 126 3 0 0 0 0.82752 1 18216 18216 2.3027 0 1 580380 37370 14491 23654 23665 42562 42562 0.054874883685215536 RPAPRGGV 8 Unmodified _RPAPRGGV_ 0 0 0 L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense;L1PA5_dup7857|chr10:87525540-87531312:-|1.1808981152803928|0.0821756683294849|3.85|149.0|284|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|306|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 405.24066162109375 2 405.240661 808.46677 0.076173 3.0868E-05 0.031435 1.2739E-05 0.10761 4.3607E-05 405.24063011420424 76.219 1.0701 79.82 79.402 80.472 3.6012 296 126 3 0 0 0 0.82752 2 18033 18033;18141 2.3027 0 1 617530 37371 14491 23654 23665 42563;42564 42563 0.054874883685215536 RPARAPAA 8 Unmodified _RPARAPAA_ 0 0 0 REV__nc|ENSG00000141858|Q6SPF0|SAMD1 REV__nc|ENSG00000141858|Q6SPF0|SAMD1 MULTI-MSMS UPN48_class_I_Rep_3 7 405.2404479980469 2 405.240661 808.46677 0.14116 5.7205E-05 -0.00027226 -1.1033E-07 0.14089 5.7095E-05 405.2406115865811 76.416 1.2118 79.999 79.411 80.622 3.5831 285 132 3 0 0 0 0.82752 2 18104 18104;18152 0.69038 0 1 957790 + 37372 31999 23655 23666 42565;42566 42565 0.05487488368498816 RPARHYVS 8 Unmodified _RPARHYVS_ 0 0 0 L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|264|2|anti-sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|264|2|anti-sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|264|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.2699279785156 2 493.26995 984.525347 -0.2978 -0.0001469 -1.396 -0.00068863 -1.6938 -0.00083552 493.2692341140589 28.566 0.50035 32.332 32.053 32.554 3.7662 59 44 2 0 0 0 0.82752 1 4427 4427 0.69038 0 1 47557 37373 8561 23656 23667 42567 42567 0.03246544942987839 RPARYLCT 8 Unmodified _RPARYLCT_ 0 0 0 REV__L1MCa_dup4588|chrX:136715398-136715910:+|1.6193008195219956|0.0313770990525823|5.69|151.0|27|2|anti-sense REV__L1MCa_dup4588|chrX:136715398-136715910:+|1.6193008195219956|0.0313770990525823|5.69|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 490.260498046875 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 27.743 1 31.499 30.999 31.999 3.7555 0 0 0 0.40746 1 3679 3679 0.69038 0 1 + 37374 27207 23657 23668 42568 42568 0.016806669767674975 RPASLRSR 8 Unmodified _RPASLRSR_ 0 0 0 nc|ENSG00000143674|Q5TCX8-3|MAP3K21;ENSG00000143674|ENST00000366624|MAP3K21 nc|ENSG00000143674|Q5TCX8-3|MAP3K21 nc|ENSG00000143674|Q5TCX8-3|MAP3K21 MSMS UPN48_class_I_Rep_1 5 471.7825927734375 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 117.17 1 120.79 120.29 121.29 3.6254 0 0 0 0.40746 1 28550 28550 0.69038 0 1 37375 3318 23658 23669 42569 42569 0.0787823383432169 RPAVLLLLLLL 11 Unmodified _RPAVLLLLLLL_ 0 0 0 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 MSMS UPN46_class_I_Rep_3 1 617.4368896484375 2 617.436484 1232.85842 NaN NaN NaN NaN NaN NaN NaN 83.154 1 83.154 82.654 83.654 0 0 0 0 0.38417 1 19735 19735 0 0 1 + 37376 629 23659 23670 42570 42570 0.2513002622390559 RPCFIERK 8 Unmodified _RPCFIERK_ 0 0 0 REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|134|1|anti-sense REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|134|1|anti-sense MSMS UPN48_class_I_Rep_2 6 524.788818359375 2 524.789661 1047.56477 NaN NaN NaN NaN NaN NaN NaN 115.76 1 119.42 118.92 119.92 3.6607 0 0 0 0.40643 1 27713 27713 2.0598 0.21551 1 + 37377 23704 23660 23671 42571 42571 0.042889289022014054 RPCPYFAEL 9 Unmodified _RPCPYFAEL_ 0 0 0 REV__THE1B-int_dup3193|chr11:78272172-78273733:+|2.186032039388496|0.0173047080128873|6.98|151.0|16|2|sense REV__THE1B-int_dup3193|chr11:78272172-78273733:+|2.186032039388496|0.0173047080128873|6.98|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 547.7858276367188 2 548.268227 1094.5219 NaN NaN NaN NaN NaN NaN NaN 48.988 1 52.334 51.834 52.834 3.3465 0 0 0 0.36505 1 10640 10640 7.2892 0 1 + 37378 32259 23661 23672 42572 42572 -0.021578859458941224 RPCYRTKRP 9 Unmodified _RPCYRTKRP_ 0 0 0 REV__LTR5_Hs_dup475|chr14:45213722-45214690:+|2.882847488860415|0.1302598940467386|4.47|151.0|21|3|sense REV__LTR5_Hs_dup475|chr14:45213722-45214690:+|2.882847488860415|0.1302598940467386|4.47|151.0|21|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.822998046875 2 588.824566 1175.63458 0.52559 0.00030948 -3.0108 -0.0017728 -2.4852 -0.0014633 588.8224352892757 63.23 0.074036 66.739 66.709 66.783 3.5091 6 5 2 0 0 0 0.48846 1 14122 14122 1.8442 0.19162 1 76570 + 37379 30958 23662 23673 42573 42573 0.053788075708098404 RPDRVTIG 8 Unmodified _RPDRVTIG_ 0 0 0 CON__Q3T052 CON__Q3T052 CON__Q3T052 MULTI-MSMS UPN47_class_I_Rep_3 4 457.26422119140625 2 457.264333 912.514114 -0.15313 -7.0019E-05 0.21208 9.6978E-05 0.058957 2.6959E-05 457.2643294104242 73.093 1.9641 76.32 75.19 77.155 3.2271 308 175 3 0 0 0 0.82752 1 17978 17978 5.2307 0 1 325030 + 37380 654 23663 23674 42574 42574 0.05435722848858404 RPEFYVYS 8 Unmodified _RPEFYVYS_ 0 0 0 REV__HAL1ME_dup3213|chr6:35609190-35610284:-|2.2009876922354548|0.1610773390518543|3.77|151.0|13|1|sense REV__HAL1ME_dup3213|chr6:35609190-35610284:-|2.2009876922354548|0.1610773390518543|3.77|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 530.802001953125 2 530.758549 1059.50255 NaN NaN NaN NaN NaN NaN NaN 111.17 1 114.69 114.19 115.19 3.529 0 0 0 0.40659 1 27280 27280 1.8442 0 1 + 37381 23492 23664 23675 42575 42575 -0.024825189651664914 RPEGKARV 8 Unmodified _RPEGKARV_ 0 0 0 REV__ENST00000392627.5_1_17:72427778-72427970:+|nuORF REV__ENST00000392627.5_1_17:72427778-72427970:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 456.7721862792969 2 456.772326 911.530098 0.16545 7.5574E-05 -0.083496 -3.8139E-05 0.081955 3.7435E-05 456.77214724280805 80.643 0.59013 84.288 84.096 84.686 3.6446 121 81 2 0 0 0 0.82752 1 19141 19141 5.2307 0 1 656100 + 37382 22091 23665 23676 42576 42576 0.07079429085740685 RPEKLPYV 8 Unmodified _RPEKLPYV_ 0 0 0 REV__L1PA15-16_dup83|chr2:99230962-99233602:+|3.629064779369443|0.1052052521685118|5.11|151.0|118|1|anti-sense REV__L1PA15-16_dup83|chr2:99230962-99233602:+|3.629064779369443|0.1052052521685118|5.11|151.0|118|1|anti-sense MSMS UPN47_class_I_Rep_1 2 500.81036376953125 2 501.292559 1000.57057 NaN NaN NaN NaN NaN NaN NaN 114.06 1 117.63 117.13 118.13 3.572 0 0 0 0.40738 1 28172 28172 0.79363 0 1 + 37383 29308 23666 23677 42577 42577 0.07030350685522535 RPENYFKHI 9 Unmodified _RPENYFKHI_ 0 0 0 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 MSMS UPN48_class_I_Rep_2 6 602.31689453125 2 602.317097 1202.61964 NaN NaN NaN NaN NaN NaN NaN 49.546 1 53.241 52.741 53.741 3.6946 0 0 0 0.39598 1 10022 10022 1.6526 0.32309 1 37384 2891 23667 23678 42578 42578 0.02643638974473106 RPEQPFIV 8 Unmodified _RPEQPFIV_ 0 0 0 ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-2|WDR91 ENSG00000105875|ENST00000354475|WDR91 ENSG00000105875|ENST00000354475|WDR91 MSMS UPN48_class_I_Rep_1 5 493.2778625488281 2 493.276909 984.539266 NaN NaN NaN NaN NaN NaN NaN 33.152 1 36.672 36.172 37.172 3.5201 0 0 0 0.40738 1 5133 5133 0.79363 0 1 37385 1767 23668 23679 42579 42579 0.04637777651430497 RPFFLFRF 8 Unmodified _RPFFLFRF_ 0 0 0 REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|285|1|anti-sense REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|285|1|anti-sense MSMS UPN47_class_I_Rep_3 4 565.3173217773438 2 565.318912 1128.62327 NaN NaN NaN NaN NaN NaN NaN 80.002 1 83.311 82.811 83.811 3.309 0 0 0 0.40746 1 20021 20021 0.69038 0 1 + 37386 30456 23669 23680 42580 42580 0.06410353538990421 RPFFLFRF 8 Unmodified _RPFFLFRF_ 0 0 0 REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|285|1|anti-sense REV__L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|285|1|anti-sense MSMS UPN48_class_I_Rep_1 5 565.3194580078125 2 565.318912 1128.62327 NaN NaN NaN NaN NaN NaN NaN 79.857 1 83.406 82.906 83.906 3.5487 0 0 0 0.40746 1 19076 19076 0.69038 0 1 + 37387 30456 23669 23680 42581 42581 0.06410353538990421 RPFFRLLFR 9 Unmodified _RPFFRLLFR_ 0 0 0 L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 417.9204406738281 3 417.92062 1250.74003 -0.11896 -4.9714E-05 0.014993 6.266E-06 -0.10396 -4.3448E-05 417.9205300155738 42.937 1.9494 46.448 45.949 47.898 3.5103 408 155 4 0 0 0 0.4823 1 8110 8110 2.4985 2.4985 1 1584000 37388 12089 23670 23681 42582 42582 0.12469091758725881 RPFFRLLFR 9 Unmodified _RPFFRLLFR_ 0 0 0 L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 417.92047119140625 3 417.92062 1250.74003 0.012933 5.405E-06 -0.042012 -1.7558E-05 -0.029079 -1.2153E-05 417.92050105349244 42.759 2.0576 46.517 45.791 47.849 3.7579 436 173 4 0 0 0 0.12522 1 8033 8033 0.96228 0.96228 1 935030 37389 12089 23670 23681 42583 42583 0.12469091758725881 RPFFRLLFR 9 Unmodified _RPFFRLLFR_ 0 0 0 L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense L1MDa_dup1219|chr3:47883524-47884441:-|1.353396415975712|0.087559066681067|3.95|151.0|60|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 417.92062 1250.74003 0.017957 7.5047E-06 -0.12484 -5.2173E-05 -0.10688 -4.4669E-05 417.92047956938745 42.878 1.7649 46.519 45.969 47.734 3.6415 0.024613 -9.8161E-05 NaN 0.96228 368 133 4 NaN NaN NaN NaN 0 NaN NaN 0 1158900 37390 12089 23670 23681 0.12469091758725881 RPFGLTPPTIL 11 Unmodified _RPFGLTPPTIL_ 0 0 0 ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS UPN46_class_I_Rep_3 1 606.862548828125 2 606.360973 1210.70739 0.38996 0.00023646 -0.05882 -3.5666E-05 0.33114 0.00020079 606.3607161820163 32.029 0.069298 32.029 31.984 32.053 0 8 4 2 0 0 0 0.67264 1 5428 5428 1.1933 0 1 135330 37391 5744 23671 23682 42584 42584 0.11046839845243994 RPFLLRCYL 9 Unmodified _RPFLLRCYL_ 0 0 0 MLT1G3_dup1280|chr7:92672916-92673292:+|1.7293398648578542|0.0029981973399152|9.17|151.0|2|1|sense MLT1G3_dup1280|chr7:92672916-92673292:+|1.7293398648578542|0.0029981973399152|9.17|151.0|2|1|sense MLT1G3_dup1280|chr7:92672916-92673292:+|1.7293398648578542|0.0029981973399152|9.17|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 590.8256225585938 2 590.836611 1179.65867 NaN NaN NaN NaN NaN NaN NaN 13.153 1 16.61 16.11 17.11 3.457 0 0 0 0.4007 1 259 259 0.52476 0 1 37392 16417 23672 23683 42585 42585 0.0760264800449022 RPFLRLLVFRL 11 Unmodified _RPFLRLLVFRL_ 0 0 0 REV__L1M1_dup4385|chr8:98225529-98226584:-|1.0028978314967|0.0471037615226251|4.41|150.0|49|2|anti-sense REV__L1M1_dup4385|chr8:98225529-98226584:-|1.0028978314967|0.0471037615226251|4.41|150.0|49|2|anti-sense MSMS UPN46_class_I_Rep_3 1 477.3099365234375 3 477.309996 1428.90816 NaN NaN NaN NaN NaN NaN NaN 113.9 1 113.9 113.4 114.4 0 0 0 0 0.38417 1 28138 28138 0.094841 0 1 + 37393 24100 23673 23684 42586 42586 0.21086153952546738 RPFPCPGW 8 Unmodified _RPFPCPGW_ 0 0 0 REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|129|2|anti-sense MSMS UPN47_class_I_Rep_1 2 480.24310302734375 2 480.231448 958.448342 NaN NaN NaN NaN NaN NaN NaN 26.095 1 29.857 29.357 30.357 3.7624 0 0 0 0.40625 1 3682 3682 2.3027 0 1 + 37394 23682 23674 23685 42587 42587 -0.032543895977028114 RPFPLKHP 8 Unmodified _RPFPLKHP_ 0 0 0 REV__ENST00000264033.5_1_11:119149415-119156175:+|nuORF REV__ENST00000264033.5_1_11:119149415-119156175:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2953186035156 2 496.295436 990.57632 -0.035052 -1.7396E-05 -0.088966 -4.4153E-05 -0.12402 -6.155E-05 496.2953798404446 26.394 0.222 26.394 26.227 26.449 0 48 21 3 0 0 0 0.82752 1 3737 3737 0.69038 0 1 208170 + 37395 21577 23675 23686 42588 42588 0.0806549398784 RPFPRLGPL 9 Unmodified _RPFPRLGPL_ 0 0 0 REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|377|3|anti-sense REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|377|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 527.369140625 2 526.821818 1051.62908 0.42099 0.00022179 0.050306 2.6502E-05 0.47129 0.00024829 526.8217802213509 109.48 0.80933 113.01 112.94 113.75 3.5347 259 116 3 0 0 0 0.12034 1 26967 26967 7.2892 0 1 3764200 + 37396 29979 23676 23687 42589 42589 0.10533452050663072 RPFPRLGPL 9 Unmodified _RPFPRLGPL_ 0 0 0 REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|377|3|anti-sense REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|377|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.821818 1051.62908 0.30103 0.00015859 -0.022655 -1.1935E-05 0.27838 0.00014666 526.82238748977 109.23 0.12314 112.86 112.75 112.88 3.6321 -0.071217 -6.4059E-05 NaN 7.2892 39 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4968800 + 37397 29979 23676 23687 0.10533452050663072 RPFPRLGPL 9 Unmodified _RPFPRLGPL_ 0 0 0 REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|377|3|anti-sense REV__L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|377|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.821818 1051.62908 0.45793 0.00024125 -0.0041208 -2.1709E-06 0.45381 0.00023908 526.8218406238914 109.24 0.94771 112.92 112.81 113.76 3.6751 -0.0095965 -4.4531E-05 NaN 7.2892 304 132 3 NaN NaN NaN NaN 0 NaN NaN 0 7784900 + 37398 29979 23676 23687 0.10533452050663072 RPFPSSRL 8 Unmodified _RPFPSSRL_ 0 0 0 ENST00000492535.1_1_22:32889009-32894514:+|nuORF;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7 ENST00000492535.1_1_22:32889009-32894514:+|nuORF ENST00000492535.1_1_22:32889009-32894514:+|nuORF MSMS UPN48_class_I_Rep_1 5 480.3706359863281 2 480.274701 958.534849 NaN NaN NaN NaN NaN NaN NaN 34.617 1 38.131 37.631 38.631 3.5144 0 0 0 0.40472 1 5560 5560 4.3292 0 1 37399 1483 23677 23688 42590 42590 0.05392313228526291 RPFPVIKC 8 Unmodified _RPFPVIKC_ 0 0 0 REV__L1ME1_dup23348|chr12:132096395-132098062:-|2.001999473140472|0.1744464078570614|3.52|151.0|70|1|anti-sense REV__L1ME1_dup23348|chr12:132096395-132098062:-|2.001999473140472|0.1744464078570614|3.52|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_2 6 480.2788391113281 2 480.278398 958.542243 NaN NaN NaN NaN NaN NaN NaN 120 1 123.66 123.16 124.16 3.656 0 0 0 0.40746 1 28802 28802 0.69038 0 1 + 37400 27690 23678 23689 42591 42591 0.061313295045806626 RPFREHHI 8 Unmodified _RPFREHHI_ 0 0 0 ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1 ENST00000453505.6_1_20:48741597-48767785:-|nuORF ENST00000453505.6_1_20:48741597-48767785:-|nuORF MSMS UPN48_class_I_Rep_1 5 546.2960205078125 2 546.296499 1090.57845 NaN NaN NaN NaN NaN NaN NaN 40.356 1 43.861 43.361 44.361 3.5048 0 0 0 0.40738 1 7232 7232 0.79363 0 1 37401 5706 23679 23690 42592 42592 0.036779227256374725 RPFSTPNSF 9 Unmodified _RPFSTPNSF_ 0 0 0 ENST00000380495.8_1_16:30041857-30042208:-|nuORF ENST00000380495.8_1_16:30041857-30042208:-|nuORF ENST00000380495.8_1_16:30041857-30042208:-|nuORF MSMS UPN46_class_I_Rep_3 1 526.82177734375 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 71.967 1 71.967 71.467 72.467 0 0 0 0 0.38639 1 16608 16608 3.9444 0.66309 1 37402 6487 23680 23691 42593 42593 -0.015000007336084309 RPFTPPLLR 9 Unmodified _RPFTPPLLR_ 0 0 0 REV__ENSG00000135040|ENST00000361671|NAA35 REV__ENSG00000135040|ENST00000361671|NAA35 MULTI-MSMS UPN46_class_I_Rep_3 1 548.835205078125 2 548.834926 1095.6553 0.068033 3.7339E-05 0.41389 0.00022716 0.48192 0.0002645 548.8349853086355 26.952 0.26822 26.952 26.94 27.209 0 28 22 2 0 0 0 0.48846 1 3994 3994 1.8442 0 1 486670 + 37403 19122 23681 23692 42594 42594 0.11129721222141598 RPFTRFLV 8 Unmodified _RPFTRFLV_ 0 0 0 ENSG00000174173|ENST00000309922|TRMT10C ENSG00000174173|ENST00000309922|TRMT10C ENSG00000174173|ENST00000309922|TRMT10C MULTI-MSMS UPN47_class_I_Rep_2 3 518.3087158203125 2 518.308544 1034.60253 0.25761 0.00013352 0.52755 0.00027343 0.78515 0.00040695 518.3085038446775 109.34 1.5715 112.87 112.69 114.26 3.5307 359 219 3 0 0 0 0.82752 1 26670 26670 4.756 0 1 18192000 37404 4667 23682 23693 42595 42595 0.08661763159329894 RPFYALHL 8 Unmodified _RPFYALHL_ 0 0 0 REV__L1M5_dup47534|chr17:2971793-2972347:+|1.7481156886180815|0.0085568109196029|7.67|151.0|25|1|anti-sense REV__L1M5_dup47534|chr17:2971793-2972347:+|1.7481156886180815|0.0085568109196029|7.67|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 508.7868347167969 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 20.094 1 20.094 19.594 20.594 0 0 0 0 0.40738 1 2030 2030 0.79363 0 1 + 37405 24684 23683 23694 42596 42596 0.053177877509369864 RPGALLLC 8 Unmodified _RPGALLLC_ 0 0 0 MSTA-int_dup214|chr2:63198767-63200213:+|1.1072272041295146|0.0382539098126|4.86|149.0|25|2|sense MSTA-int_dup214|chr2:63198767-63200213:+|1.1072272041295146|0.0382539098126|4.86|149.0|25|2|sense MSTA-int_dup214|chr2:63198767-63200213:+|1.1072272041295146|0.0382539098126|4.86|149.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 421.7512512207031 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 67.038 1 70.534 70.034 71.034 3.4964 0 0 0 0.40738 1 15362 15362 0.79363 0 1 37406 16549 23684 23695 42597 42597 0.05731067579165483 RPGAPRGP 8 Unmodified _RPGAPRGP_ 0 0 0 ENST00000410070.6_3_1:42846497-42865159:+|nuORF REV__ENST00000557682.6_1_15:93426072-93426198:+|nuORF REV__ENST00000557682.6_1_15:93426072-93426198:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 404.73443603515625 2 404.232836 806.45112 0.052212 2.1106E-05 0.23388 9.4542E-05 0.28609 0.00011565 404.2327863368947 81.815 0.24419 81.815 81.619 81.863 0 33 23 2 0 0 0 0.82752 1 19333 19333 2.3027 0 1 58274 37407 6630 23685 23696 42598 42598 0.040152018514731935 RPGAVLRLYL 10 Unmodified _RPGAVLRLYL_ 0 0 0 REV__ENSG00000153179|ENST00000542104|RASSF3 REV__ENSG00000153179|ENST00000542104|RASSF3 MULTI-MSMS UPN46_class_I_Rep_3 1 579.361572265625 2 579.361308 1156.70806 0.50792 0.00029427 0.73537 0.00042604 1.2433 0.00072031 579.3615986904713 108.85 0.94095 108.85 108.69 109.63 0 140 72 4 0 0 0 0.51565 1 26672 26672 10.074 0 1 44688000 + 37408 19706 23686 23697 42599 42599 0.13597679284930564 RPGDRVALVF 10 Unmodified _RPGDRVALVF_ 0 0 0 ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C MSMS UPN48_class_I_Rep_1 5 565.3280639648438 2 565.327465 1128.64038 NaN NaN NaN NaN NaN NaN NaN 97.029 1 100.64 100.14 101.14 3.6088 0 0 0 0.53105 1 23403 23403 0.45834 0 1 37409 3583 23687 23698 42600 42600 0.0812022935413097 RPGGRVSERP 10 Unmodified _RPGGRVSERP_ 0 0 0 REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|54|2|anti-sense REV__LTR12E_dup56|chr5:180045263-180046393:-|1.1958302669162288|0.0279391058235703|5.42|151.0|54|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.31201171875 2 555.809971 1109.60539 -0.18474 -0.00010268 0.56947 0.00031652 0.38473 0.00021383 555.8102868077204 13.51 0.2219 13.51 13.369 13.591 0 41 26 2 0 0 0 0.56118 1 414 414 2.9952 0.93549 1 29067 + 37410 30825 23688 23699 42601 42601 0.054969865461771406 RPGLKTGLGPP 11 Unmodified _RPGLKTGLGPP_ 0 0 0 REV__ENST00000340096.10_2_X:13753108-13753386:+|nuORF REV__ENST00000340096.10_2_X:13753108-13753386:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 546.8298950195312 2 546.82984 1091.64513 0.38167 0.00020871 -0.34346 -0.00018782 0.03821 2.0895E-05 546.8296180930956 45.894 0.86408 49.531 49.127 49.991 3.6369 89 61 2 0 0 0 0.66277 1 8847 8847 2.086 2.086 1 163750 + 37411 21815 23689 23700 42602 42602 0.10297113496903876 RPGQAGWA 8 Unmodified _RPGQAGWA_ 0 0 0 REV__ENST00000409687.4_1_9:139957783-139958401:-|nuORF REV__ENST00000409687.4_1_9:139957783-139958401:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 421.7166748046875 2 421.717019 841.419485 -0.93725 -0.00039526 0.49282 0.00020783 -0.44444 -0.00018743 421.7172034107585 15.532 0.31328 18.919 18.821 19.135 3.3864 48 34 2 0 0 0 0.82752 1 825 825 0.79363 0 1 25937 + 37412 22185 23690 23701 42603 42603 -0.00756790902494231 RPGQNFQHY 9 Unmodified _RPGQNFQHY_ 0 0 0 L1P1_dup484|chr3:4363363-4367403:-|2.3820274500798395|0.1263828661118829|4.24|151.0|169|2|anti-sense;L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|265|2|anti-sense;L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|152|1|anti-sense L1P1_dup484|chr3:4363363-4367403:-|2.3820274500798395|0.1263828661118829|4.24|151.0|169|2|anti-sense L1P1_dup484|chr3:4363363-4367403:-|2.3820274500798395|0.1263828661118829|4.24|151.0|169|2|anti-sense MSMS UPN47_class_I_Rep_2 3 573.7740478515625 2 573.775597 1145.53664 NaN NaN NaN NaN NaN NaN NaN 51.512 1 54.851 54.351 55.351 3.3386 0 0 0 0.38478 1 11417 11417 4.3292 0.73274 1 37413 13475 23691 23702 42604 42604 -0.030306777535315632 RPGWRHRG 8 Unmodified _RPGWRHRG_ 0 0 0 REV__ENST00000444184.5_1_9:132250990-132251182:+|nuORF REV__ENST00000444184.5_1_9:132250990-132251182:+|nuORF MSMS UPN48_class_I_Rep_1 5 511.27923583984375 2 511.281183 1020.54781 NaN NaN NaN NaN NaN NaN NaN 27.858 1 31.416 30.916 31.916 3.5571 0 0 0 0.40625 1 3650 3650 2.3027 0 1 + 37414 22347 23692 23703 42605 42605 0.0383618913126611 RPHGWLLI 8 Unmodified _RPHGWLLI_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2953796386719 2 496.295436 990.57632 0.0012795 6.35E-07 0.10268 5.0962E-05 0.10396 5.1597E-05 496.2954547375532 28.004 0.22031 28.004 27.84 28.06 0 31 15 3 0 0 0 0.72333 1 4214 4214 0.79363 0 1 305440 + 37415 18176 23693 23704 42606 42606 0.08065493987851369 RPHHYEKF 8 Unmodified _RPHHYEKF_ 0 0 0 AluJr4_dup12073|chr10:71768481-71768779:-|1.4145614025876845|0.0906079841777269|3.96|151.0|6|2|sense AluJr4_dup12073|chr10:71768481-71768779:-|1.4145614025876845|0.0906079841777269|3.96|151.0|6|2|sense AluJr4_dup12073|chr10:71768481-71768779:-|1.4145614025876845|0.0906079841777269|3.96|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.2830200195312 2 557.283057 1112.55156 0.46493 0.0002591 -0.99659 -0.00055538 -0.53166 -0.00029629 557.2823194089707 47.198 0.54317 50.72 50.45 50.994 3.5219 67 35 3 0 0 0 0.82752 1 9345 9345 10.824 0.67336 1 286900 37416 191 23694 23705 42607 42607 -0.00021185885543673066 RPHPWYFI 8 Unmodified _RPHPWYFI_ 0 0 0 MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|3|1|sense MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|3|1|sense MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2933959960938 2 558.292894 1114.57123 0.47928 0.00026758 0.6452 0.00036021 1.1245 0.00062779 558.2930874561761 77.613 0.23349 80.945 80.901 81.135 3.3315 33 25 2 0 0 0 0.82752 1 19274 19274 13.508 1.8676 1 52022 37417 15917 23695 23706 42608 42608 0.01853190125234505 RPHPWYFI 8 Unmodified _RPHPWYFI_ 0 0 0 MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|3|1|sense MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|3|1|sense MER31B_dup739|chr8:52654623-52655043:+|1.1277323053775523|0.23605190677794|2.26|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 558.2939453125 2 558.292894 1114.57123 NaN NaN NaN NaN NaN NaN NaN 53.484 1 56.81 56.31 57.31 3.3266 0 0 0 0.40581 1 12014 12014 2.8892 0.58649 1 37418 15917 23695 23706 42609 42609 0.01853190125234505 RPHPYLNP 8 Unmodified _RPHPYLNP_ 0 0 0 REV__AluJr_dup58977|chr13:28190247-28190559:-|1.10112589673502|0.012461344696771|6.47|151.0|8|2|sense REV__AluJr_dup58977|chr13:28190247-28190559:-|1.10112589673502|0.012461344696771|6.47|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.2672119140625 2 497.266876 992.519199 0.22976 0.00011425 -0.027311 -1.3581E-05 0.20245 0.00010067 497.26680431161026 40.193 0.85534 43.934 43.582 44.437 3.7413 167 90 2 0 0 0 0.82752 1 7266 7266 2.3027 0 1 192220 + 37419 17045 23696 23707 42610 42610 0.02264026711452516 RPHRRNRH 8 Unmodified _RPHRRNRH_ 0 0 0 REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 MSMS UPN48_class_I_Rep_2 6 564.7960815429688 2 564.821538 1127.62852 NaN NaN NaN NaN NaN NaN NaN 111.79 1 115.46 114.96 115.96 3.6666 0 0 0 0.40746 1 26602 26602 0.69038 0 1 + 37420 19445 23697 23708 42611 42611 0.0698147017417341 RPIAIKKI 8 Unmodified _RPIAIKKI_ 0 0 0 L1MB2_dup1352|chr3:33086898-33087287:+|1.0893746535912394|0.0934412499285845|3.54|151.0|11|2|sense L1MB2_dup1352|chr3:33086898-33087287:+|1.0893746535912394|0.0934412499285845|3.54|151.0|11|2|sense L1MB2_dup1352|chr3:33086898-33087287:+|1.0893746535912394|0.0934412499285845|3.54|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 469.8299865722656 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.87 1 98.487 97.987 98.987 3.6167 0 0 0 0.40625 1 22836 22836 2.3027 0 1 37421 10207 23698 23709 42612 42612 0.17235524198792973 RPIARWKMKP 10 Unmodified _RPIARWKMKP_ 0 0 0 REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 641.8826293945312 2 641.881884 1281.74922 0.74986 0.00048132 0.58555 0.00037586 1.3354 0.00085718 641.8822002189053 92.764 0.22131 92.764 92.729 92.95 0 36 22 2 0 0 0 0.56333 1 22474 22474 1.4819 0 1 651510 + 37422 23621 23699 23710 42613 42613 0.11961117052760528 RPIARWKMKP 10 Unmodified _RPIARWKMKP_ 0 0 0 REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 642.3829956054688 2 641.881884 1281.74922 0.74994 0.00048137 0.67718 0.00043467 1.4271 0.00091604 641.8823346764503 93.279 0.22099 93.279 93.164 93.385 0 32 21 2 0 0 0 0.56333 1 22626 22626 1.4819 0.15237 1 380710 + 37423 23621 23699 23710 42614 42614 0.11961117052760528 RPIARWKMKP 10 Unmodified _RPIARWKMKP_ 0 0 0 REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 641.881884 1281.74922 0.44235 0.00028394 1.1038 0.00070851 1.5462 0.00099245 641.8824411235018 89.527 0.068321 93.153 93.143 93.211 3.6255 -0.10976 0.00035294 NaN 1.4819 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 87249 + 37424 23621 23699 23710 0.11961117052760528 RPIARWKMKP 10 Unmodified _RPIARWKMKP_ 0 0 0 REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|81|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 641.881884 1281.74922 0.49972 0.00032076 1.0457 0.00067122 1.5454 0.00099198 641.8825854734162 89.619 0.07122 93.366 93.319 93.39 3.7471 0.10392 0.00027835 NaN 1.4819 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 65658 + 37425 23621 23699 23710 0.11961117052760528 RPIFFFFFF 9 Unmodified _RPIFFFFFF_ 0 0 0 AluSx1_dup97816|chr17:46558378-46558690:-|2.502685558424365|0.2107505811576455|3.57|150.0|16|2|anti-sense AluSx1_dup97816|chr17:46558378-46558690:-|2.502685558424365|0.2107505811576455|3.57|150.0|16|2|anti-sense AluSx1_dup97816|chr17:46558378-46558690:-|2.502685558424365|0.2107505811576455|3.57|150.0|16|2|anti-sense MSMS UPN47_class_I_Rep_2 3 634.3367919921875 2 634.33677 1266.65899 NaN NaN NaN NaN NaN NaN NaN 45.577 1 48.93 48.43 49.43 3.3534 0 0 0 0.40038 1 9617 9617 0.6015 0 1 37426 327 23700 23711 42615 42615 0.03632390995971946 RPIFIWYH 8 Unmodified _RPIFIWYH_ 0 0 0 REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|39|2|sense REV__L1MA4A_dup2524|chr6:156209212-156211181:-|1.8825513842400328|0.0042601756950709|8.79|149.0|39|2|sense MSMS UPN48_class_I_Rep_3 7 566.3062744140625 2 566.308544 1130.60253 NaN NaN NaN NaN NaN NaN NaN 95.511 1 99.42 98.92 99.92 3.9084 0 0 0 0.40738 1 22640 22640 0.79363 0 1 + 37427 25250 23701 23712 42616 42616 0.042457631593151746 RPIFSCYN 8 Unmodified _RPIFSCYN_ 0 0 0 REV__ENSG00000163116|ENST00000295268|STPG2 REV__ENSG00000163116|ENST00000295268|STPG2 MSMS UPN46_class_I_Rep_3 1 500.2384338378906 2 500.23947 998.464386 NaN NaN NaN NaN NaN NaN NaN 15.011 1 15.011 14.511 15.511 0 0 0 0 0.40746 1 773 773 0.69038 0 1 + 37428 19965 23702 23713 42617 42617 -0.03490728151473377 RPIGKNSK 8 Unmodified _RPIGKNSK_ 0 0 0 ENST00000458537.7_1_3:170110074-170110143:+|nuORF ENST00000458537.7_1_3:170110074-170110143:+|nuORF ENST00000458537.7_1_3:170110074-170110143:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 450.2747497558594 2 450.274701 898.534849 0.047019 2.1172E-05 -0.11045 -4.9733E-05 -0.063432 -2.8562E-05 450.274643132974 72.677 0.74698 76.15 75.798 76.545 3.4732 78 57 2 0 0 0 0.82752 1 17074 17074 1.8442 0 1 104750 37429 6847 23703 23714 42618 42618 0.08152313228515595 RPIHFLPI 8 Unmodified _RPIHFLPI_ 0 0 0 REV__L1MB7_dup16190|chr12:116704066-116704632:+|4.11331112171695|0.0162400911374458|7.98|137.0|12|2|sense REV__L1MB7_dup16190|chr12:116704066-116704632:+|4.11331112171695|0.0162400911374458|7.98|137.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 496.8064270019531 2 496.805637 991.596721 NaN NaN NaN NaN NaN NaN NaN 78.478 1 78.478 77.978 78.978 0 0 0 0 0.40738 1 18382 18382 0.79363 0 1 + 37430 26158 23704 23715 42619 42619 0.10058664647658588 RPIKKMKM 8 Unmodified _RPIKKMKM_ 0 0 0 L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|36|3|sense L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|36|3|sense L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|36|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.31396484375 2 516.314457 1030.61436 0.32386 0.00016721 -0.80241 -0.00041429 -0.47855 -0.00024708 516.3139169778635 95.115 0.12074 95.115 95.037 95.157 0 20 12 2 0 0 0 0.82752 1 23079 23079 0.69038 0 1 163970 37431 12035 23705 23716 42620 42620 0.10027920586639993 RPILQAGKFK 10 Unmodified _RPILQAGKFK_ 0 0 0 ENST00000423178.6_1_10:127400100-127408035:-|nuORF ENST00000423178.6_1_10:127400100-127408035:-|nuORF ENST00000423178.6_1_10:127400100-127408035:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 579.3617553710938 2 579.361308 1156.70806 0.49218 0.00028515 0.45577 0.00026406 0.94795 0.00054921 579.3614430883185 108.69 0.38238 112.32 112.19 112.57 3.6355 111 38 4 0 0 0 0.47413 1 26746 26746 13.906 1.6654 1 91476000 37432 6690 23706 23717 42621 42621 0.13597679284907827 RPILQAGKFK 10 Unmodified _RPILQAGKFK_ 0 0 0 ENST00000423178.6_1_10:127400100-127408035:-|nuORF ENST00000423178.6_1_10:127400100-127408035:-|nuORF ENST00000423178.6_1_10:127400100-127408035:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 579.3613891601562 2 579.361308 1156.70806 0.47911 0.00027758 0.34166 0.00019794 0.82077 0.00047552 579.3613798823496 108.73 0.68481 112.41 112.2 112.88 3.6746 178 73 3 0 0 0 0.51565 1 25828 25828 10.074 1.3285 1 43747000 37433 6690 23706 23717 42622 42622 0.13597679284907827 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 495.95916748046875 3 495.958908 1484.85489 0.17363 8.6113E-05 -0.051029 -2.5308E-05 0.1226 6.0805E-05 495.9587730564716 94.222 0.94431 97.842 97.188 98.132 3.6208 169 109 2 0 0 0 0.68478 1 22683 22683 0.094841 0 1 224790 37434 6754 23707 23718 42623 42623 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 496.9744567871094 3 495.958908 1484.85489 0.17416 8.6378E-05 0.049298 2.445E-05 0.22346 0.00011083 495.9587665148714 107.2 0.25571 110.83 110.64 110.89 3.6299 83 30 4 0 0 0 0.67356 1 25824 25824 1.1098 0.096179 1 692070 37435 6754 23707 23718 42624 42624 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 495.9596252441406 3 495.958908 1484.85489 0.27868 0.00013821 0.034266 1.6994E-05 0.31294 0.00015521 495.95891576699205 96.345 0.48575 100.13 99.949 100.44 3.7804 73 62 2 0 0 0 22.551 1 22913 22913 0.094841 0 1 321120 37436 6754 23707 23718 42625 42625 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 495.958908 1484.85489 0.27893 0.00013834 -0.50549 -0.0002507 -0.22656 -0.00011236 495.95865815057823 107.24 0.14558 110.92 110.83 110.97 3.6724 0.078216 -0.0010221 NaN 1.1098 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 346550 37437 6754 23707 23718 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958908 1484.85489 0.44686 0.00022163 0.31079 0.00015414 0.75766 0.00037577 495.9588818035537 107.25 0.11405 110.78 110.7 110.81 3.5345 -0.055446 0.00019246 NaN 1.1098 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 503830 37438 6754 23707 23718 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 495.958908 1484.85489 0.28013 0.00013893 1.3271 0.00065819 1.6072 0.00079712 495.9589210623764 107.24 0.11342 110.78 110.71 110.82 3.5382 -0.0581 0.0017046 NaN 1.1098 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 317900 37439 6754 23707 23718 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 495.958908 1484.85489 0.279 0.00013837 0.26641 0.00013213 0.54542 0.0002705 495.9588576148829 107.17 0.33502 110.85 110.6 110.94 3.6783 0.014521 0.00012643 NaN 1.1098 104 46 3 NaN NaN NaN NaN 0 NaN NaN 0 654750 37440 6754 23707 23718 0.1318616922255842 RPINRRQSRRF 11 Unmodified _RPINRRQSRRF_ 0 0 0 ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF ENST00000436397.5_2_19:52901831-52904968:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 495.958908 1484.85489 0.25139 0.00012468 0.37398 0.00018548 0.62537 0.00031016 495.9589476356859 107.18 0.26559 110.87 110.64 110.91 3.6899 0.029997 0.00028648 NaN 1.1098 83 36 3 NaN NaN NaN NaN 0 NaN NaN 0 635610 37441 6754 23707 23718 0.1318616922255842 RPIRCEGC 8 Unmodified _RPIRCEGC_ 0 0 0 REV__MER45C_dup146|chr2:99623237-99624057:-|1.0424467558055392|0.0299440973008179|5.12|151.0|21|1|anti-sense REV__MER45C_dup146|chr2:99623237-99624057:-|1.0424467558055392|0.0299440973008179|5.12|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 467.2956848144531 2 467.223297 932.43204 NaN NaN NaN NaN NaN NaN NaN 83.048 1 86.586 86.086 87.086 3.5386 0 0 0 0.40746 1 20761 20761 0.69038 0 1 + 37442 31331 23708 23719 42626 42626 -0.03687838826112966 RPIVPKNK 8 Unmodified _RPIVPKNK_ 0 0 0 REV__L1PBa1_dup354|chr12:11143879-11145122:-|1.5238192692164518|0.0437429973614473|5.12|151.0|28|3|sense REV__L1PBa1_dup354|chr12:11143879-11145122:-|1.5238192692164518|0.0437429973614473|5.12|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 476.3068542480469 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 80.537 1 80.537 80.037 81.037 0 0 0 0 0.40746 1 18978 18978 0.69038 0 1 + 37443 30675 23709 23720 42627 42627 0.12525763159317194 RPKAKLLP 8 Unmodified _RPKAKLLP_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MSMS UPN47_class_I_Rep_3 4 461.81121826171875 2 461.813462 921.612371 NaN NaN NaN NaN NaN NaN NaN 41.918 1 45.157 44.657 45.657 3.2394 0 0 0 0.40738 1 8549 8549 0.79363 0 1 37444 3287 23710 23721 42628 42628 0.14842951164689566 RPKDKQAL 8 Unmodified _RPKDKQAL_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN47_class_I_Rep_1 2 478.286865234375 2 478.287808 954.561064 -0.38717 -0.00018518 -0.20706 -9.9034E-05 -0.59423 -0.00028421 478.2874749117495 13.018 0.18473 16.475 16.416 16.6 3.457 30 15 3 0 0 0 0.82752 1 217 217 9.3831 2.66 1 64671 37445 1037 23711 23722 42629 42629 0.0819658239997807 RPKDKQAL 8 Unmodified _RPKDKQAL_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN47_class_I_Rep_2 3 478.28741455078125 2 478.287808 954.561064 -0.24184 -0.00011567 -0.23267 -0.00011128 -0.47451 -0.00022695 478.2874219242161 13.068 0.26119 16.456 16.377 16.638 3.388 32 23 2 0 0 0 0.82752 1 227 227 6.2058 0.9089 1 64665 37446 1037 23711 23722 42630 42630 0.0819658239997807 RPKDKQAL 8 Unmodified _RPKDKQAL_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN47_class_I_Rep_3 4 478.2872009277344 2 478.287808 954.561064 -0.81987 -0.00039213 0.3446 0.00016482 -0.47527 -0.00022732 478.2875871061596 13.077 0.29068 16.451 16.382 16.673 3.3734 41 31 2 0 0 0 0.82752 1 226 226 10.074 2.7847 1 49753 37447 1037 23711 23722 42631 42631 0.0819658239997807 RPKDSQLEDW 10 Unmodified _RPKDSQLEDW_ 0 0 0 ENST00000541694.5_1_12:122240596-122240713:-|nuORF;ENST00000536662.5_1_12:122240596-122240785:-|nuORF ENST00000541694.5_1_12:122240596-122240713:-|nuORF ENST00000541694.5_1_12:122240596-122240713:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 637.312255859375 2 637.312209 1272.60986 0.40158 0.00025593 0.20875 0.00013304 0.61033 0.00038897 637.3122377092092 48.213 0.34646 51.949 51.828 52.175 3.7361 35 23 2 0 0 0 0.56078 2 9582 9582;9621 3.2813 0 1 118070 37448 7333 23712 23723 42632;42633 42632 -0.015535938215634815 RPKDSQLEDW 10 Unmodified _RPKDSQLEDW_ 0 0 0 ENST00000541694.5_1_12:122240596-122240713:-|nuORF;ENST00000536662.5_1_12:122240596-122240785:-|nuORF ENST00000541694.5_1_12:122240596-122240713:-|nuORF ENST00000541694.5_1_12:122240596-122240713:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 637.3129272460938 2 637.312209 1272.60986 0.5385 0.00034319 0.18029 0.0001149 0.71879 0.00045809 637.3120526342962 48.485 0.30334 52.118 51.998 52.301 3.6339 31 23 2 0 0 0 0.56078 1 9613 9613 3.2813 0 1 117750 37449 7333 23712 23723 42634 42634 -0.015535938215634815 RPKERKPFKKN 11 Unmodified _RPKERKPFKKN_ 0 0 0 REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 476.62353515625 3 476.624643 1426.8521 0.10229 4.8753E-05 -1.3128 -0.00062572 -1.2105 -0.00057696 476.6239479084141 105.07 0.066345 108.69 108.65 108.72 3.6247 13 8 2 0 0 0 0.68024 1 25316 25316 0.50596 0.051438 1 1942700 + 37450 25260 23713 23724 42635 42635 0.15574901045056322 RPKERKPFKKN 11 Unmodified _RPKERKPFKKN_ 0 0 0 REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.6235656738281 3 476.624643 1426.8521 0.21505 0.0001025 -2.059 -0.00098136 -1.8439 -0.00087886 476.6236513712659 107.25 0.12108 110.94 110.83 110.95 3.6899 19 11 3 0 0 0 0.68024 1 25279 25279 0.50596 0.051438 1 948560 + 37451 25260 23713 23724 42636 42636 0.15574901045056322 RPKERKPFKKN 11 Unmodified _RPKERKPFKKN_ 0 0 0 REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 476.624643 1426.8521 0.23793 0.0001134 -1.8332 -0.00087376 -1.5953 -0.00076036 476.9580310722886 107.2 0.036118 110.87 110.84 110.88 3.6724 0.053545 0.00030664 NaN 0.50596 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 94529 + 37452 25260 23713 23724 0.15574901045056322 RPKERKPFKKN 11 Unmodified _RPKERKPFKKN_ 0 0 0 REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 476.624643 1426.8521 0.10186 4.8551E-05 -2.1108 -0.001006 -2.0089 -0.0009575 476.62355995651905 107.01 0.18414 110.64 110.52 110.7 3.6299 -0.17245 -9.021E-05 NaN 0.50596 24 22 2 NaN NaN NaN NaN 0 NaN NaN 0 87966 + 37453 25260 23713 23724 0.15574901045056322 RPKERKPFKKN 11 Unmodified _RPKERKPFKKN_ 0 0 0 REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|99|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 476.624643 1426.8521 0.22436 0.00010694 -1.1523 -0.00054924 -0.92799 -0.0004423 476.62391881312413 105.38 0.055962 109.07 109.04 109.1 3.6901 0.18771 0.00018738 NaN 0.50596 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 148630 + 37454 25260 23713 23724 0.15574901045056322 RPKFAGLW 8 Unmodified _RPKFAGLW_ 0 0 0 ENST00000561234.5_2_15:40758405-40758639:+|nuORF ENST00000561234.5_2_15:40758405-40758639:+|nuORF ENST00000561234.5_2_15:40758405-40758639:+|nuORF MSMS UPN46_class_I_Rep_3 1 487.79150390625 2 487.782162 973.549771 NaN NaN NaN NaN NaN NaN NaN 79.234 1 79.234 78.734 79.734 0 0 0 0 0.40604 1 18602 18602 2.5775 0 1 37455 7458 23714 23725 42637 42637 0.0619380509651819 RPKGKQKT 8 Unmodified _RPKGKQKT_ 0 0 0 REV__L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|17|3|sense REV__L1ME4b_dup7658|chr6:20418871-20419498:-|1.453648002344283|0.018192791589844|6.32|150.0|17|3|sense MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 22.288 1 25.638 25.138 26.138 3.3496 0 0 0 0.40746 1 2641 2641 0.69038 0 1 + 37456 28307 23715 23726 42638 42638 0.10392288636899139 RPKKQPLLTVE 11 Unmodified _RPKKQPLLTVE_ 0 0 0 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 MSMS UPN48_class_I_Rep_3 7 436.93951416015625 3 436.938117 1307.79252 NaN NaN NaN NaN NaN NaN NaN 45.94 1 49.577 49.077 50.077 3.6369 0 0 0 0.38417 1 8852 8852 2.8433 0.21205 1 37457 3615 23716 23727 42639 42639 0.15093585311024071 RPKKWAVWPK 10 Unmodified _RPKKWAVWPK_ 0 0 0 REV__ENST00000488174.5_1_X:70764426-70764489:+|nuORF REV__ENST00000488174.5_1_X:70764426-70764489:+|nuORF MSMS UPN47_class_I_Rep_3 4 432.30181884765625 3 432.596025 1294.76625 NaN NaN NaN NaN NaN NaN NaN 107.45 1 110.99 110.49 111.49 3.5382 0 0 0 0.53105 1 26239 26239 1.7423 0.52744 1 + 37458 22613 23717 23728 42640 42640 0.13065360930204406 RPKNKSKV 8 Unmodified _RPKNKSKV_ 0 0 0 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 MSMS UPN47_class_I_Rep_3 4 478.80218505859375 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 68.613 1 71.811 71.311 72.311 3.1977 0 0 0 0.40604 1 16684 16684 2.5775 0 1 37459 5489 23718 23729 42641 42641 0.11312575153942817 RPKPAIPPKPG 11 Unmodified _RPKPAIPPKPG_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS UPN48_class_I_Rep_3 7 579.3616943359375 2 579.361308 1156.70806 0.4854 0.00028122 0.3998 0.00023163 0.8852 0.00051285 579.3614379114558 108.66 0.40789 112.34 112.24 112.65 3.6751 104 45 3 0 0 0 0.33678 1 25760 25760 12.241 2.1667 1 48441000 + 37460 19747 23719 23730 42642 42642 0.13597679284930564 RPKPAIPPKPG 11 Unmodified _RPKPAIPPKPG_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 579.361308 1156.70806 0.63489 0.00036783 0.55944 0.00032412 1.1943 0.00069195 579.361535793133 108.68 0.61081 112.21 112.1 112.71 3.5333 -0.068075 0.00010899 NaN 12.241 210 70 4 NaN NaN NaN NaN 0 NaN NaN 0 53106000 + 37461 19747 23719 23730 0.13597679284930564 RPKPAIPPKPG 11 Unmodified _RPKPAIPPKPG_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 579.361308 1156.70806 0.40416 0.00023415 0.38772 0.00022463 0.79188 0.00045878 579.3613694042914 108.67 0.56372 112.31 112.19 112.75 3.6321 0.024638 -8.9986E-05 NaN 12.241 208 66 4 NaN NaN NaN NaN 0 NaN NaN 0 58899000 + 37462 19747 23719 23730 0.13597679284930564 RPKPAIPPKPG 11 Unmodified _RPKPAIPPKPG_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MATCH UPN48_class_I_Rep_2 6 2 579.361308 1156.70806 0.479 0.00027751 0.15709 9.1011E-05 0.63609 0.00036853 579.3613061115453 108.6 0.061485 112.27 112.23 112.29 3.6746 -0.012344 -0.00035722 NaN 12.241 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 5633100 + 37463 19747 23719 23730 0.13597679284930564 RPKPDEKYYS 10 Unmodified _RPKPDEKYYS_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MSMS UPN48_class_I_Rep_3 7 641.8240356445312 2 641.824952 1281.63535 NaN NaN NaN NaN NaN NaN NaN 111.9 1 115.57 115.07 116.07 3.6614 0 0 0 0.53105 1 26572 26572 1.6526 0.32309 1 37464 2139 23720 23731 42643 42643 0.0057988070086594234 RPKPRRGRF 9 Unmodified _RPKPRRGRF_ 0 0 0 ENST00000606662.1_1_5:115420534-115420723:-|nuORF ENST00000606662.1_1_5:115420534-115420723:-|nuORF ENST00000606662.1_1_5:115420534-115420723:-|nuORF MSMS UPN46_class_I_Rep_3 1 585.0289916992188 2 585.359965 1168.70538 NaN NaN NaN NaN NaN NaN NaN 107.55 1 107.55 107.05 108.05 0 0 0 0 0.35339 1 26233 26233 7.9102 0.3012 1 37465 7685 23721 23732 42644 42644 0.1277726867065212 RPKPRVYH 8 Unmodified _RPKPRVYH_ 0 0 0 LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|4|1|sense;LTR6B_dup28|chr3:187010516-187011071:+|1.1242072856726404|0.0273216173072757|5.36|151.0|19|3|sense;LTR6B_dup70|chr8:8145205-8145756:+|1.2679782552458272|0.064556813767477|4.3|150.0|12|2|sense LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|4|1|sense LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.311767578125 2 526.809242 1051.60393 0.38588 0.00020329 -0.059495 -3.1343E-05 0.32639 0.00017194 527.3117520017424 34.639 0.090382 38.313 38.294 38.384 3.6735 11 8 2 0 0 0 0.82752 1 5610 5610 0.69038 0 1 94992 37466 15701 23722 23733 42645 42645 0.08019397248085625 RPKQEKGQ 8 Unmodified _RPKQEKGQ_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|92|3|sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|92|3|sense MSMS UPN48_class_I_Rep_2 6 485.77508544921875 2 485.775065 969.535577 NaN NaN NaN NaN NaN NaN NaN 66.784 1 70.281 69.781 70.781 3.4964 0 0 0 0.40746 1 15284 15284 0.69038 0 1 + 37467 25390 23723 23734 42646 42646 0.04959107877573388 RPKQPRRW 8 Unmodified _RPKQPRRW_ 0 0 0 REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|134|2|sense REV__L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|134|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.8358764648438 2 562.333416 1122.65228 -0.015647 -8.7986E-06 1.8785 0.0010564 1.8629 0.0010476 562.3343714894551 20.994 0.044436 20.994 20.98 21.025 0 7 4 2 0 0 0 0.82752 1 2278 2278 0.69038 0 1 91247 + 37468 25363 23724 23735 42647 42647 0.09585890887979076 RPKRKQKI 8 Unmodified _RPKRKQKI_ 0 0 0 REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|8|1|sense REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 527.2327880859375 2 527.353817 1052.69308 NaN NaN NaN NaN NaN NaN NaN 70.158 1 73.529 73.029 74.029 3.3713 0 0 0 0.40746 1 17036 17036 0.69038 0 1 + 37469 28156 23725 23736 42648 42648 0.1688423220759887 RPKRPITTKT 10 Unmodified _RPKRPITTKT_ 0 0 0 REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF MSMS UPN48_class_I_Rep_1 5 599.3734741210938 2 599.374946 1196.73534 NaN NaN NaN NaN NaN NaN NaN 89.227 1 92.852 92.352 93.352 3.6255 0 0 0 0.53105 1 21418 21418 1.4819 0.8804 1 + 37470 22839 23726 23737 42649 42649 0.14484162825306157 RPKRPITTKT 10 Unmodified _RPKRPITTKT_ 0 0 0 REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF MSMS UPN48_class_I_Rep_3 7 599.3721313476562 2 599.374946 1196.73534 NaN NaN NaN NaN NaN NaN NaN 92.476 1 96.354 95.854 96.854 3.8782 0 0 0 0.53105 1 21923 21923 1.4819 0.8804 1 + 37471 22839 23726 23737 42650 42650 0.14484162825306157 RPKSKSKGS 9 Unmodified _RPKSKSKGS_ 0 0 0 REV__L1PB1_dup10362|chr12:118286288-118287226:+|2.5761349146785157|0.0193790290845987|7.05|151.0|5|1|sense REV__L1PB1_dup10362|chr12:118286288-118287226:+|2.5761349146785157|0.0193790290845987|7.05|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 487.79071044921875 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 86.324 1 90.042 89.542 90.542 3.7171 0 0 0 0.39036 1 20555 20555 2.9952 0.41776 1 + 37472 30294 23727 23738 42651 42651 0.07903680911670108 RPKVGSRI 8 Unmodified _RPKVGSRI_ 0 0 0 REV__nc|ENSG00000170390|Q8N568-2|DCLK2 REV__nc|ENSG00000170390|Q8N568-2|DCLK2 MSMS UPN47_class_I_Rep_3 4 456.7915344238281 2 456.790518 911.566484 NaN NaN NaN NaN NaN NaN NaN 34.606 1 37.87 37.37 38.37 3.2639 0 0 0 0.40746 1 6311 6311 0.69038 0 1 + 37473 20361 23728 23739 42652 42652 0.1071630598247566 RPKVKHIL 8 Unmodified _RPKVKHIL_ 0 0 0 nc|nan|Q8N4C9-2|C17orf78;ENSG00000278505|ENST00000615133|C17orf78 nc|nan|Q8N4C9-2|C17orf78 nc|nan|Q8N4C9-2|C17orf78 MSMS UPN47_class_I_Rep_1 2 496.2828674316406 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 81.499 1 84.986 84.486 85.486 3.4874 0 0 0 0.40738 1 20338 20338 0.79363 0 1 37474 5839 23729 23740 42653 42653 0.15458042430316254 RPKVVLKV 8 Unmodified _RPKVVLKV_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2 MSMS UPN47_class_I_Rep_3 4 469.8306579589844 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 91.155 1 94.556 94.056 95.056 3.401 0 0 0 0.40625 1 22811 22811 2.3027 1.6124 1 + 37475 18247 23730 23741 42654 42654 0.17235524198792973 RPKVVLKVG 9 Unmodified _RPKVVLKVG_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2 MSMS UPN46_class_I_Rep_3 1 498.3399963378906 2 498.339844 994.665135 NaN NaN NaN NaN NaN NaN NaN 31.422 1 31.422 30.922 31.922 0 0 0 0 0.4007 1 5247 5247 0.52476 0 1 + 37476 18247 23731 23742 42655 42655 0.16758909227507957 RPKWHPVG 8 Unmodified _RPKWHPVG_ 0 0 0 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 MULTI-MSMS UPN46_class_I_Rep_3 1 488.77667236328125 2 488.777411 975.540269 0.2613 0.00012772 -1.2106 -0.00059171 -0.94929 -0.00046399 488.77679988959176 75.918 0.31591 75.918 75.787 76.103 0 41 31 2 0 0 0 0.82752 2 17682 17682;17718 5.2307 0.90143 1 100130 37477 16655 23732 23743 42656;42657 42656 0.051520368109891024 RPKWHPVG 8 Unmodified _RPKWHPVG_ 0 0 0 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 488.777411 975.540269 0.2613 0.00012772 -1.2106 -0.00059171 -0.94929 -0.00046399 488.77679988959176 75.918 0.31591 75.918 75.787 76.103 0 0 0 NaN 5.2307 41 31 2 NaN NaN NaN NaN 0 NaN NaN 0 100130 37478 16655 23732 23743 0.051520368109891024 RPKWKRVLP 9 Unmodified _RPKWKRVLP_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MSMS UPN48_class_I_Rep_1 5 590.377197265625 2 590.377292 1178.74003 NaN NaN NaN NaN NaN NaN NaN 51.208 1 54.733 54.233 55.233 3.5246 0 0 0 0.4007 1 10538 10538 0.52476 0 1 37479 4810 23733 23744 42658 42658 0.15781091758753973 RPKWKRVLP 9 Unmodified _RPKWKRVLP_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MSMS UPN48_class_I_Rep_2 6 590.3771362304688 2 590.377292 1178.74003 NaN NaN NaN NaN NaN NaN NaN 51.14 1 54.807 54.307 55.307 3.6679 0 0 0 0.4007 1 10511 10511 0.52476 0 1 37480 4810 23733 23744 42659 42659 0.15781091758753973 RPLAILTKK 9 Unmodified _RPLAILTKK_ 0 0 0 L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|5|1|sense;L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|46|2|sense L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|5|1|sense L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 520.35302734375 2 520.352951 1038.69135 0.27068 0.00014085 0.15903 8.2754E-05 0.42971 0.0002236 520.3530098789254 108.24 0.39685 111.87 111.74 112.14 3.6313 63 32 5 0 0 0 0.5015 1 26242 26242 0.45834 0 1 8404300 37481 15264 23734 23745 42660 42660 0.17355178398975113 RPLALQTI 8 Unmodified _RPLALQTI_ 0 0 0 L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|47|2|sense L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|47|2|sense L1PA15_dup59|chr1:50766699-50769768:+|2.490262748400791|0.0358973046517928|6.12|151.0|47|2|sense MSMS UPN47_class_I_Rep_2 3 456.28692626953125 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 23.748 1 27.214 26.714 27.714 3.4655 0 0 0 0.38112 1 3039 3039 14.838 0 1 37482 13957 23735 23746 42661 42661 0.10114368031076992 RPLALSCLMV 10 Unmodified _RPLALSCLMV_ 0 0 0 REV__ENST00000493927.5_1_10:134005984-134006017:+|nuORF REV__ENST00000493927.5_1_10:134005984-134006017:+|nuORF MSMS UPN48_class_I_Rep_2 6 551.8099365234375 2 551.809205 1101.60386 NaN NaN NaN NaN NaN NaN NaN 31.29 1 34.931 34.431 35.431 3.641 0 0 0 0.53105 1 4687 4687 1.4819 0.68827 1 + 37483 22648 23736 23747 42662 42662 0.05711893141551627 RPLERHVR 8 Unmodified _RPLERHVR_ 0 0 0 REV__ENST00000541961.5_1_11:66259062-66259225:+|nuORF REV__ENST00000541961.5_1_11:66259062-66259225:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 531.8175048828125 2 531.817599 1061.62064 0.32259 0.00017156 -0.77853 -0.00041404 -0.45594 -0.00024247 531.8170472205047 80.793 0.32294 80.793 80.643 80.966 0 60 33 2 0 0 0 0.82752 1 19015 19015 0.6015 0 1 140380 + 37484 22921 23737 23748 42663 42663 0.09229898134026371 RPLGHWLL 8 Unmodified _RPLGHWLL_ 0 0 0 ENST00000532338.5_1_8:145533646-145534000:+|nuORF ENST00000532338.5_1_8:145533646-145534000:+|nuORF ENST00000532338.5_1_8:145533646-145534000:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955627441406 2 496.295436 990.57632 0.18732 9.2967E-05 -0.0044937 -2.2302E-06 0.18283 9.0737E-05 496.29543001728916 36.358 0.16116 36.358 36.335 36.496 0 15 12 2 0 0 0 0.82752 1 6744 6744 0.79363 0 1 799300 37485 7301 23738 23749 42664 42664 0.08065493987851369 RPLGLWQPL 9 Unmodified _RPLGLWQPL_ 0 0 0 L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|98|3|anti-sense L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|98|3|anti-sense L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|98|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 0.07421 4.0097E-05 0.15698 8.4817E-05 0.23119 0.00012491 540.3216544932005 28.737 0.23688 28.737 28.578 28.814 0 37 16 3 0 0 0 0.48846 1 4465 4465 1.8442 0 1 470810 37486 10673 23739 23750 42665 42665 0.09258032330808419 RPLGLWQPL 9 Unmodified _RPLGLWQPL_ 0 0 0 L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|98|3|anti-sense L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|98|3|anti-sense L1MB7_dup10532|chr9:14594222-14595620:+|1.1962798806040904|0.302220741951789|1.98|150.0|98|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3212280273438 2 540.321651 1078.62875 0.08272 4.4696E-05 0.11834 6.3942E-05 0.20106 0.00010864 540.3216465560832 29.134 0.12712 29.134 29.019 29.146 0 29 12 3 0 0 0 0.48846 1 4547 4547 1.8442 0 1 411160 37487 10673 23739 23750 42666 42666 0.09258032330808419 RPLGPGKW 8 Unmodified _RPLGPGKW_ 0 0 0 REV__ENSG00000111331|ENST00000228928|OAS3 REV__ENSG00000111331|ENST00000228928|OAS3 MSMS UPN47_class_I_Rep_3 4 455.7712707519531 2 455.766512 909.518471 NaN NaN NaN NaN NaN NaN NaN 31.613 1 34.912 34.412 35.412 3.2991 0 0 0 0.40746 1 5410 5410 0.69038 0 1 + 37488 18453 23740 23751 42667 42667 0.06009232062422143 RPLGRLPSV 9 Unmodified _RPLGRLPSV_ 0 0 0 MER50_dup2282|chr18:2911021-2911648:-|1.3176201855723093|0.2176468876096884|2.6|151.0|7|1|sense MER50_dup2282|chr18:2911021-2911648:-|1.3176201855723093|0.2176468876096884|2.6|151.0|7|1|sense MER50_dup2282|chr18:2911021-2911648:-|1.3176201855723093|0.2176468876096884|2.6|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 497.80914306640625 2 497.811451 993.608348 NaN NaN NaN NaN NaN NaN NaN 17.219 1 20.769 20.269 21.269 3.5504 0 0 0 0.4007 1 1250 1250 0.52476 0 1 37489 16053 23741 23752 42668 42668 0.11128861670988499 RPLHKKLV 8 Unmodified _RPLHKKLV_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS UPN48_class_I_Rep_1 5 495.83367919921875 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 58.53 1 62.017 61.517 62.517 3.487 0 0 0 0.40746 1 12779 12779 0.69038 0 1 37490 2592 23742 23753 42669 42669 0.15458042430327623 RPLHKKLV 8 Unmodified _RPLHKKLV_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS UPN48_class_I_Rep_1 5 495.8348083496094 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 112.18 1 115.81 115.31 116.31 3.6321 0 0 0 0.40746 1 27215 27215 0.69038 0 1 37491 2592 23742 23753 42670 42670 0.15458042430327623 RPLIAMKM 8 Unmodified _RPLIAMKM_ 0 0 0 REV__L1PA15_dup60|chr1:50770069-50771616:+|1.437409416018948|0.0213263042280418|6.07|150.0|19|2|sense REV__L1PA15_dup60|chr1:50770069-50771616:+|1.437409416018948|0.0213263042280418|6.07|150.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 480.28033447265625 2 480.280083 958.545614 NaN NaN NaN NaN NaN NaN NaN 20.709 1 24.376 23.876 24.876 3.6667 0 0 0 0.40746 1 1817 1817 0.69038 0 1 + 37492 29260 23743 23754 42671 42671 0.06468256286939322 RPLIKWRTKIV 11 Unmodified _RPLIKWRTKIV_ 0 0 0 REV__ENSG00000082898|ENST00000401558|XPO1 REV__ENSG00000082898|ENST00000401558|XPO1 MSMS UPN46_class_I_Rep_3 1 470.4598083496094 3 470.641634 1408.90307 NaN NaN NaN NaN NaN NaN NaN 77.351 1 77.351 76.851 77.851 0 0 0 0 0.38417 1 18077 18077 0.08335 0 1 + 37493 17926 23744 23755 42672 42672 0.21497850089917847 RPLKKAIL 8 Unmodified _RPLKKAIL_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|477|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|477|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|477|3|anti-sense MSMS UPN48_class_I_Rep_2 6 469.8301696777344 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 93.789 1 97.559 97.059 98.059 3.77 0 0 0 0.40404 1 22302 22302 5.2307 0 1 37494 8039 23745 23756 42673 42673 0.17235524198792973 RPLKKAIL 8 Unmodified _RPLKKAIL_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|477|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|477|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|477|3|anti-sense MSMS UPN48_class_I_Rep_3 7 469.8302307128906 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.489 1 98.391 97.891 98.891 3.9016 0 0 0 0.40604 1 22390 22390 2.5775 0 1 37495 8039 23745 23756 42674 42674 0.17235524198792973 RPLKRIPA 8 Unmodified _RPLKRIPA_ 0 0 0 REV__MER21C_dup593|chr2:69613240-69614100:+|1.511982948703015|0.0108315562884326|7.13|149.0|59|2|anti-sense REV__MER21C_dup593|chr2:69613240-69614100:+|1.511982948703015|0.0108315562884326|7.13|149.0|59|2|anti-sense MSMS UPN46_class_I_Rep_3 1 475.80096435546875 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 89.718 1 89.718 89.218 90.218 0 0 0 0 0.40798 1 21597 21597 0 0 1 + 37496 31248 23746 23757 42675 42675 0.14169469396210843 RPLLHHKLR 9 Unmodified _RPLLHHKLR_ 0 0 0 REV__ENST00000436279.1_1_6:161570255-161575330:-|nuORF REV__ENST00000436279.1_1_6:161570255-161575330:-|nuORF MSMS UPN47_class_I_Rep_2 3 585.37451171875 2 585.372541 1168.73053 NaN NaN NaN NaN NaN NaN NaN 31.424 1 34.893 34.393 35.393 3.4691 0 0 0 0.4007 1 5317 5317 0.52476 0 1 + 37497 17621 23747 23758 42676 42676 0.1529132347320683 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3263854980469 2 476.326737 950.63892 -0.027311 -1.3009E-05 -0.73448 -0.00034985 -0.76179 -0.00036286 476.32623712781987 28.976 0.10253 28.976 28.908 29.01 0 9 6 2 0 0 0 0.82752 1 4530 4530 0 0 1 78217 + 37498 24931 23748 23759 42677 42677 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3265075683594 2 476.326737 950.63892 -0.019313 -9.1992E-06 -0.55569 -0.00026469 -0.575 -0.00027389 476.32640215406315 29.322 0.093946 29.322 29.281 29.375 0 8 5 2 0 0 0 0.82752 1 4638 4638 0 0 1 139000 + 37499 24931 23748 23759 42678 42678 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.32635498046875 2 476.326737 950.63892 0.0011367 5.4142E-07 -0.25239 -0.00012022 -0.25126 -0.00011968 476.3263876274067 30.238 0.056931 30.238 30.222 30.279 0 6 3 2 0 0 0 0.82752 1 4902 4902 0 0 1 102590 + 37500 24931 23748 23759 42679 42679 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3260803222656 2 476.326737 950.63892 0.023275 1.1087E-05 -0.42715 -0.00020346 -0.40387 -0.00019237 476.3264002518207 31.203 0.15073 31.203 31.175 31.326 0 12 9 2 0 0 0 0.82752 1 5202 5202 0 0 1 97260 + 37501 24931 23748 23759 42680 42680 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.32647705078125 2 476.326737 950.63892 0.02673 1.2732E-05 -0.37351 -0.00017791 -0.34678 -0.00016518 476.3264402224989 31.386 0.11327 31.386 31.373 31.486 0 10 8 2 0 0 0 0.82752 1 5244 5244 0 0 1 353750 + 37502 24931 23748 23759 42681 42681 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3261413574219 2 476.326737 950.63892 0.08467 4.033E-05 -0.82099 -0.00039106 -0.73632 -0.00035073 476.3263055662118 34.046 0.04187 34.046 34.013 34.055 0 4 2 2 0 0 0 0.82752 1 6034 6034 0 0 1 57691 + 37503 24931 23748 23759 42682 42682 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.3265686035156 2 476.326737 950.63892 0.1015 4.8349E-05 -0.17681 -8.4217E-05 -0.075301 -3.5868E-05 476.3265759668826 34.781 0.04174 34.781 34.764 34.805 0 4 2 2 0 0 0 0.82752 1 6259 6259 0 0 1 95352 + 37504 24931 23748 23759 42683 42683 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.32684326171875 2 476.326737 950.63892 0.25655 0.0001222 -0.11735 -5.5895E-05 0.1392 6.6306E-05 476.32659447286477 109.69 0.53139 109.69 109.58 110.11 0 62 43 2 0 0 0 0.82752 1 27056 27056 0 0 1 2217700 + 37505 24931 23748 23759 42684 42684 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 476.32666015625 2 476.326737 950.63892 0.25691 0.00012237 -0.10875 -5.18E-05 0.14816 7.0571E-05 476.3264981829434 110.25 0.11583 110.25 110.18 110.3 0 15 8 3 0 0 0 0.82752 1 27157 27157 0 0 1 663040 + 37506 24931 23748 23759 42685 42685 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.32672119140625 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 33.394 1 33.394 32.894 33.894 0 0 0 0 0.40798 1 5835 5835 0 0 1 + 37507 24931 23748 23759 42686 42686 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 475.73797607421875 2 476.326737 950.63892 0.043836 2.088E-05 -0.24632 -0.00011733 -0.20248 -9.6447E-05 476.32656848333386 32.177 0.092659 32.177 32.126 32.219 0 10 6 2 0 0 0 0.72333 1 5461 5461 0 0 1 125710 + 37508 24931 23748 23759 42687 42687 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.3266906738281 2 476.326737 950.63892 0.32269 0.00015371 -0.13498 -6.4295E-05 0.18771 8.941E-05 476.32657850827337 108.31 1.0247 111.84 111.63 112.65 3.5333 174 111 2 0 0 0 0.82752 2 26231 26231;26323 0 0 1 26077000 + 37509 24931 23748 23759 42688;42689 42688 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.3267822265625 2 476.326737 950.63892 0.21453 0.00010219 -0.35017 -0.0001668 -0.13564 -6.4611E-05 476.3264640105163 108.55 0.33939 112.23 112.17 112.51 3.6751 61 39 2 0 0 0 0.82752 2 25690 25690;25786 0 0 1 28923000 + 37510 24931 23748 23759 42690;42691 42690 0.16162640056018063 RPLLLALR 8 Unmodified _RPLLLALR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|87|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 476.326737 950.63892 0.25691 0.00012237 -0.10875 -5.18E-05 0.14816 7.0571E-05 476.3264981829434 110.25 0.11583 110.25 110.18 110.3 0 0 0 NaN 0 15 8 3 NaN NaN NaN NaN 0 NaN NaN 0 663040 + 37511 24931 23748 23759 0.16162640056018063 RPLLLFYVF 9 Unmodified _RPLLLFYVF_ 0 0 0 REV__ENST00000340384.4_1_9:140135667-140136192:+|nuORF REV__ENST00000340384.4_1_9:140135667-140136192:+|nuORF MSMS UPN47_class_I_Rep_2 3 584.34765625 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 115.13 1 118.63 118.13 119.13 3.5039 0 0 0 0.40038 1 28062 28062 0.6015 0 1 + 37512 21817 23749 23760 42692 42692 0.10852660167461181 RPLLPHIP 8 Unmodified _RPLLPHIP_ 0 0 0 REV__L1MC1_dup12540|chr20:47561624-47562536:-|1.83542217150451|0.0083462013630965|7.78|151.0|41|1|anti-sense REV__L1MC1_dup12540|chr20:47561624-47562536:-|1.83542217150451|0.0083462013630965|7.78|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7957458496094 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 32.301 1 35.756 35.256 36.256 3.4547 0 0 0 0.40581 1 5578 5578 2.8892 0 1 + 37513 26522 23750 23761 42693 42693 0.1079437813059485 RPLLVQRYL 9 Unmodified _RPLLVQRYL_ 0 0 0 ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000465558.5_1_2:219610891-219612857:+|nuORF ENST00000465558.5_1_2:219610891-219612857:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 579.3623657226562 2 579.361308 1156.70806 0.49218 0.00028515 0.45577 0.00026406 0.94795 0.00054921 579.3614430883185 108.69 0.38238 112.32 112.19 112.57 3.6355 111 38 4 0 0 0 0.45688 1 26691 26691 4.756 0 1 91476000 37514 2938 23751 23762 42694 42694 0.13597679284930564 RPLLVQRYL 9 Unmodified _RPLLVQRYL_ 0 0 0 ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000465558.5_1_2:219610891-219612857:+|nuORF ENST00000465558.5_1_2:219610891-219612857:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 579.3610229492188 2 579.361308 1156.70806 0.47911 0.00027758 0.34166 0.00019794 0.82077 0.00047552 579.3613798823496 108.73 0.68481 112.41 112.2 112.88 3.6746 178 73 3 0 0 0 0.41259 3 25779 25779;25967;25973 7.2892 1.0834 1 43747000 37515 2938 23751 23762 42695;42696;42697 42695 0.13597679284930564 RPLLVQRYL 9 Unmodified _RPLLVQRYL_ 0 0 0 ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000465558.5_1_2:219610891-219612857:+|nuORF ENST00000465558.5_1_2:219610891-219612857:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 579.8634033203125 2 579.361308 1156.70806 0.4856 0.00028134 0.47255 0.00027378 0.95815 0.00055512 579.3615158561119 109.04 0.21586 112.72 112.61 112.82 3.6751 50 24 3 0 0 0 0.50088 1 25899 25899 0.52476 0 1 9931600 37516 2938 23751 23762 42698 42698 0.13597679284930564 RPLMLTLS 8 Unmodified _RPLMLTLS_ 0 0 0 REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|27|1|sense REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|27|1|sense MSMS UPN46_class_I_Rep_3 1 465.7778625488281 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 77.873 1 77.873 77.373 78.373 0 0 0 0 0.40746 1 18220 18220 0.69038 0 1 + 37517 23538 23752 23763 42699 42699 0.06923605922111165 RPLMVGTKKK 10 Unmodified _RPLMVGTKKK_ 0 0 0 REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1 REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1 MULTI-SECPEP UPN47_class_I_Rep_2 3 579.864013671875 2 579.362993 1156.71143 0.63491 0.00036785 0.45208 0.00026192 1.087 0.00062977 579.3638937216281 109.29 0.45705 112.82 112.68 113.13 3.5307 129 61 3 0 0 0 0.84575 1 26574 26574 1.3295 0.63916 1 2607000 + 37518 17252 23753 23764 42700 42700 0.13934606067277855 RPLPPRSF 8 Unmodified _RPLPPRSF_ 0 0 0 REV__ENST00000498406.1_1_22:21355751-21355970:-|nuORF REV__ENST00000498406.1_1_22:21355751-21355970:-|nuORF MSMS UPN48_class_I_Rep_3 7 485.2861328125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 39.484 1 43.14 42.64 43.64 3.6557 0 0 0 0.40604 1 6913 6913 2.5775 0 1 + 37519 22678 23754 23765 42701 42701 0.07004903608185487 RPLQSFLPF 9 Unmodified _RPLQSFLPF_ 0 0 0 HERVH-int_dup411|chr1:231830678-231832404:-|1.857374941642752|0.06614680147239|4.81|151.0|20|2|sense HERVH-int_dup411|chr1:231830678-231832404:-|1.857374941642752|0.06614680147239|4.81|151.0|20|2|sense HERVH-int_dup411|chr1:231830678-231832404:-|1.857374941642752|0.06614680147239|4.81|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 552.74609375 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 25.376 1 28.859 28.359 29.359 3.483 0 0 0 0.4007 1 3512 3512 0.52476 0 1 37520 8149 23755 23766 42702 42702 0.06510326093894037 RPLRKLIPGKV 11 Unmodified _RPLRKLIPGKV_ 0 0 0 REV__nc|ENSG00000124006|O75147-2|OBSL1 REV__nc|ENSG00000124006|O75147-2|OBSL1 MULTI-MSMS UPN48_class_I_Rep_1 5 638.9319458007812 2 638.932431 1275.85031 0.43444 0.00027758 -1.1976 -0.00076516 -0.76312 -0.00048758 638.9318207156531 108.37 0.16314 112 111.95 112.11 3.6313 19 12 2 0 0 0 0.68583 1 26244 26244 0 0 1 793110 + 37521 18791 23756 23767 42703 42703 0.2234189202708876 RPLRKLIPGKV 11 Unmodified _RPLRKLIPGKV_ 0 0 0 REV__nc|ENSG00000124006|O75147-2|OBSL1 REV__nc|ENSG00000124006|O75147-2|OBSL1 MULTI-MSMS UPN48_class_I_Rep_2 6 638.9313354492188 2 638.932431 1275.85031 0.49885 0.00031873 -0.71091 -0.00045423 -0.21207 -0.0001355 638.931814827564 108.02 0.11688 111.69 111.59 111.71 3.6746 26 10 3 0 0 0 0.68583 1 25573 25573 0 0 1 3981500 + 37522 18791 23756 23767 42704 42704 0.2234189202708876 RPLRNIHTV 9 Unmodified _RPLRNIHTV_ 0 0 0 L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|77|2|anti-sense L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|77|2|anti-sense L1PB3_dup2828|chr13:33894722-33896167:+|1.5129871348392416|0.0204373656610685|6.21|151.0|77|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.33251953125 2 553.333082 1104.65161 0.41135 0.00022761 -0.97664 -0.00054041 -0.56529 -0.00031279 553.3324159561023 91.45 0.32709 91.45 91.232 91.559 0 45 28 2 0 0 0 0.50088 1 22080 22080 0.52476 0 1 415690 37523 15281 23757 23768 42705 42705 0.10347051448252387 RPLRPFHC 8 Unmodified _RPLRPFHC_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MSMS UPN48_class_I_Rep_1 5 513.275390625 2 513.276721 1024.53889 NaN NaN NaN NaN NaN NaN NaN 63.015 1 66.477 65.977 66.977 3.4625 0 0 0 0.40625 1 14151 14151 2.3027 0 1 37524 2967 23758 23769 42706 42706 0.02760079450581543 RPLRPGQYSTI 11 Unmodified _RPLRPGQYSTI_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-SECPEP UPN48_class_I_Rep_2 6 643.865478515625 2 644.362036 1286.70952 0.50051 0.00032251 -0.89153 -0.00057447 -0.39102 -0.00025196 644.3616638010336 105.06 0.37794 108.75 108.62 109 3.6901 77 57 2 0 0 0 22.551 1 24889 24889 8.7454 3.8484 1 1167700 37525 795 23759 23770 42707 42707 0.07763268583039462 RPLRPGQYSTI 11 Unmodified _RPLRPGQYSTI_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MATCH UPN47_class_I_Rep_1 2 2 644.362036 1286.70952 0.58268 0.00037546 -1.4107 -0.00090902 -0.82804 -0.00053356 644.3615925856375 104.95 0.58456 108.69 108.64 109.23 3.7395 -0.11365 -0.00033687 NaN 8.7454 155 90 3 NaN NaN NaN NaN 0 NaN NaN 0 16381000 37526 795 23759 23770 0.07763268583039462 RPLRPGQYSTI 11 Unmodified _RPLRPGQYSTI_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MATCH UPN47_class_I_Rep_2 3 2 644.362036 1286.70952 0.63446 0.00040882 -0.79186 -0.00051025 -0.1574 -0.00010142 644.3618102377175 105.33 0.24297 108.86 108.83 109.07 3.5327 0.064247 0.00046067 NaN 8.7454 57 37 2 NaN NaN NaN NaN 0 NaN NaN 0 2007700 37527 795 23759 23770 0.07763268583039462 RPLRPGQYSTI 11 Unmodified _RPLRPGQYSTI_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MATCH UPN48_class_I_Rep_1 5 2 644.362036 1286.70952 0.43694 0.00028155 -0.15283 -9.8476E-05 0.28411 0.00018307 644.3623620731296 105.21 0.38152 108.84 108.65 109.03 3.6247 0.035564 0.0012842 NaN 8.7454 90 53 3 NaN NaN NaN NaN 0 NaN NaN 0 5373400 37528 795 23759 23770 0.07763268583039462 RPLRPGQYSTI 11 Unmodified _RPLRPGQYSTI_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MATCH UPN48_class_I_Rep_3 7 2 644.362036 1286.70952 0.64387 0.00041488 -1.0311 -0.00066443 -0.38727 -0.00024954 644.3612914449952 105.16 0.090561 108.86 108.82 108.91 3.702 0.059068 0.00015231 NaN 8.7454 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1095800 37529 795 23759 23770 0.07763268583039462 RPLRWART 8 Unmodified _RPLRWART_ 0 0 0 REV__nc|ENSG00000106077|Q8NFV4-5|ABHD11 REV__nc|ENSG00000106077|Q8NFV4-5|ABHD11 MSMS UPN48_class_I_Rep_1 5 528.31494140625 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.72 1 93.345 92.845 93.845 3.6255 0 0 0 0.40746 1 21555 21555 0.69038 0 1 + 37530 31956 23760 23771 42708 42708 0.08970799622352388 RPMGQNREP 9 Unmodified _RPMGQNREP_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|12|1|sense;L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|52|1|sense;L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|14|2|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|12|1|sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.77001953125 2 542.769457 1083.52436 0.40643 0.0002206 0.19458 0.00010561 0.60101 0.00032621 542.7695154383633 90.047 0.5294 93.673 93.422 93.951 3.6255 108 66 2 0 0 0 0.46869 1 21676 21676 3.9444 0.3479 1 205860 37531 10091 23761 23772 42709 42709 -0.014060374882319593 RPMMYVALTY 10 Unmodified _RPMMYVALTY_ 0 0 0 nc|ENSG00000119689|P36957-2|DLST;ENSG00000119689|ENST00000334220|DLST nc|ENSG00000119689|P36957-2|DLST nc|ENSG00000119689|P36957-2|DLST MULTI-MSMS UPN47_class_I_Rep_1 2 622.8109741210938 2 622.811944 1243.60934 0.24362 0.00015173 -0.88848 -0.00055335 -0.64485 -0.00040162 622.8114652365139 48.457 0.6433 52.139 51.917 52.561 3.6819 83 40 3 0 0 0 0.52562 1 10518 10518 8.7454 1.1365 1 147660 37532 2289 23762 23773 42710 42710 -0.0027242806663707597 RPMPKKYH 8 Unmodified _RPMPKKYH_ 0 0 0 ENSG00000144395|ENST00000389175|CCDC150 ENSG00000144395|ENST00000389175|CCDC150 ENSG00000144395|ENST00000389175|CCDC150 MSMS UPN48_class_I_Rep_2 6 529.2635498046875 2 528.792204 1055.56985 NaN NaN NaN NaN NaN NaN NaN 19.312 1 22.961 22.461 23.461 3.6497 0 0 0 0.40738 1 1450 1450 0.79363 0 1 37533 3351 23763 23774 42711 42711 0.044292327648236096 RPMPRPAR 8 Unmodified _RPMPRPAR_ 0 0 0 ENST00000539264.5_1_12:133136796-133146679:+|nuORF ENST00000539264.5_1_12:133136796-133146679:+|nuORF ENST00000539264.5_1_12:133136796-133146679:+|nuORF MSMS UPN47_class_I_Rep_3 4 490.7816162109375 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 111.66 1 115.18 114.68 115.68 3.5207 0 0 0 0.40746 1 27416 27416 0.69038 0 1 37534 7346 23764 23775 42712 42712 0.059194818248670344 RPMRRRKK 8 Unmodified _RPMRRRKK_ 0 0 0 REV__ENST00000354675.10_1_6:151674717-151674759:+|nuORF REV__ENST00000354675.10_1_6:151674717-151674759:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.6087646484375 2 564.356368 1126.69818 NaN NaN NaN NaN NaN NaN NaN 93.556 1 93.556 93.056 94.056 0 0 0 0 0.40746 1 22676 22676 0.69038 0.088878 1 + 37535 21860 23765 23776 42713 42713 0.13990212798580615 RPNRHALFN 9 Unmodified _RPNRHALFN_ 0 0 0 ENST00000512435.1_1_3:126006949-126007015:+|nuORF ENST00000512435.1_1_3:126006949-126007015:+|nuORF ENST00000512435.1_1_3:126006949-126007015:+|nuORF MSMS UPN47_class_I_Rep_3 4 562.8074951171875 2 562.807231 1123.59991 NaN NaN NaN NaN NaN NaN NaN 13.137 1 16.51 16.01 17.01 3.3734 0 0 0 0.4007 1 241 241 0.52476 0 1 37536 7193 23766 23777 42714 42714 0.0430530775436182 RPPFSLEVS 9 Unmodified _RPPFSLEVS_ 0 0 0 ENSG00000185271|ENST00000636854|KLHL33 ENSG00000185271|ENST00000636854|KLHL33 ENSG00000185271|ENST00000636854|KLHL33 MSMS UPN47_class_I_Rep_1 2 516.2798461914062 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 40.276 1 43.943 43.443 44.443 3.6668 0 0 0 0.39598 1 7968 7968 1.6526 0 1 37537 5095 23767 23778 42715 42715 0.030694564432451443 RPPKRKVLVR 10 Unmodified _RPPKRKVLVR_ 0 0 0 REV__ENST00000564988.5_1_15:83776528-83788831:+|nuORF REV__ENST00000564988.5_1_15:83776528-83788831:+|nuORF MSMS UPN46_class_I_Rep_3 1 624.9205932617188 2 624.922398 1247.83024 NaN NaN NaN NaN NaN NaN NaN 56.854 1 56.854 56.354 57.354 0 0 0 0 0.53105 1 12425 12425 0.40072 0.093686 1 + 37538 19183 23768 23779 42716 42716 0.21624141087158932 RPPKYFVRSRW 11 Unmodified _RPPKYFVRSRW_ 0 0 0 REV__LTR13_dup393|chr19:9775763-9776770:+|1.561380039333799|0.1532288463359854|3.35|151.0|48|2|anti-sense REV__LTR13_dup393|chr19:9775763-9776770:+|1.561380039333799|0.1532288463359854|3.35|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_3 7 497.9508361816406 3 497.949239 1490.82589 NaN NaN NaN NaN NaN NaN NaN 20.821 1 24.488 23.988 24.988 3.6667 0 0 0 0.38417 1 1848 1848 0.36667 0.27183 1 + 37539 30837 23769 23780 42717 42717 0.10010631873569764 RPPLKSTL 8 Unmodified _RPPLKSTL_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS UPN47_class_I_Rep_1 2 456.28662109375 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 23.346 1 27.05 26.55 27.55 3.7042 0 0 0 0.39242 1 2872 2872 10.824 3.5347 1 37540 837 23770 23781 42718 42718 0.10114368031076992 RPPLKSTL 8 Unmodified _RPPLKSTL_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS UPN47_class_I_Rep_1 2 456.28607177734375 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 23.566 1 27.296 26.796 27.796 3.7298 0 0 0 0.40643 1 2935 2935 2.0598 0 1 37541 837 23770 23781 42719 42719 0.10114368031076992 RPPLKSTL 8 Unmodified _RPPLKSTL_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS UPN47_class_I_Rep_2 3 456.2871398925781 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 24.059 1 27.524 27.024 28.024 3.4655 0 0 0 0.40643 1 3129 3129 2.0598 0 1 37542 837 23770 23781 42720 42720 0.10114368031076992 RPPLKSTL 8 Unmodified _RPPLKSTL_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS UPN47_class_I_Rep_3 4 456.2877197265625 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 24.223 1 27.574 27.074 28.074 3.3509 0 0 0 0.40625 1 3214 3214 2.3027 0 1 37543 837 23770 23781 42721 42721 0.10114368031076992 RPPLLAHPLFA 11 Unmodified _RPPLLAHPLFA_ 0 0 0 REV__ENST00000438932.2_1_19:46971271-46971667:-|nuORF REV__ENST00000438932.2_1_19:46971271-46971667:-|nuORF MSMS UPN47_class_I_Rep_1 2 616.3723754882812 2 616.369133 1230.72371 NaN NaN NaN NaN NaN NaN NaN 79.583 1 83.048 82.548 83.548 3.465 0 0 0 0.38417 1 19835 19835 1.3295 0.13619 1 + 37544 22321 23771 23782 42722 42722 0.11757965801984938 RPPPCETL 8 Unmodified _RPPPCETL_ 0 0 0 ENST00000253144.13_1_19:54082569-54082719:+|nuORF ENST00000253144.13_1_19:54082569-54082719:+|nuORF ENST00000253144.13_1_19:54082569-54082719:+|nuORF MSMS UPN47_class_I_Rep_3 4 456.79052734375 2 456.73402 911.453487 NaN NaN NaN NaN NaN NaN NaN 119.75 1 123.16 122.66 123.66 3.4157 0 0 0 0.40746 1 29584 29584 0.69038 0 1 37545 5920 23772 23783 42723 42723 -0.005781305257528402 RPPPCMYDW 9 Unmodified _RPPPCMYDW_ 0 0 0 REV__AluSx1_dup49777|chr8:55906367-55906656:-|2.298047480066371|0.0045606874893935|8.98|151.0|20|3|anti-sense REV__AluSx1_dup49777|chr8:55906367-55906656:-|2.298047480066371|0.0045606874893935|8.98|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.7490844726562 2 582.751887 1163.48922 NaN NaN NaN NaN NaN NaN NaN 15.453 1 18.819 18.319 19.319 3.3659 0 0 0 0.39428 1 791 791 2.0598 1.2661 1 + 37546 17180 23773 23784 42724 42724 -0.08598416340419135 RPPPGRFH 8 Unmodified _RPPPGRFH_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|55|2|anti-sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|55|2|anti-sense MSMS UPN47_class_I_Rep_3 4 482.26885986328125 2 482.26721 962.519868 NaN NaN NaN NaN NaN NaN NaN 30.913 1 34.225 33.725 34.725 3.3116 0 0 0 0.40604 1 5200 5200 2.5775 0 1 + 37547 31105 23774 23785 42725 42725 0.03710866151186565 RPPPHNRP 8 Unmodified _RPPPHNRP_ 0 0 0 L1PA4_dup6142|chr8:99081431-99087603:-|1.789422199875334|0.058777059339563|4.93|151.0|180|1|anti-sense L1PA4_dup6142|chr8:99081431-99087603:-|1.789422199875334|0.058777059339563|4.93|151.0|180|1|anti-sense L1PA4_dup6142|chr8:99081431-99087603:-|1.789422199875334|0.058777059339563|4.93|151.0|180|1|anti-sense MSMS UPN48_class_I_Rep_3 7 485.8121643066406 2 485.770117 969.525681 NaN NaN NaN NaN NaN NaN NaN 79.366 1 83.009 82.509 83.509 3.6423 0 0 0 0.40746 1 18816 18816 0.69038 0 1 37548 14374 23775 23786 42726 42726 0.039699646628378105 RPPPKIQR 8 Unmodified _RPPPKIQR_ 0 0 0 ENSG00000119522|ENST00000394215|DENND1A;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;ENSG00000119522.16,DENND1A,chr9,-,I30.1,123383914,123387729|42|8.08|2|intron ENSG00000119522|ENST00000394215|DENND1A ENSG00000119522|ENST00000394215|DENND1A MSMS UPN46_class_I_Rep_3 1 496.3111877441406 2 496.311618 990.608683 NaN NaN NaN NaN NaN NaN NaN 83.231 1 83.231 82.731 83.731 0 0 0 0 0.40746 1 19758 19758 0.69038 0 1 37549 2282 23776 23787 42727 42727 0.11300281390833788 RPPPRYVAA 9 Unmodified _RPPPRYVAA_ 0 0 0 REV__MER11A_dup797|chr13:77109706-77110805:+|1.4536776557466329|0.0433849586195212|5.07|151.0|45|1|anti-sense REV__MER11A_dup797|chr13:77109706-77110805:+|1.4536776557466329|0.0433849586195212|5.07|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 513.7962646484375 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 59.133 1 62.656 62.156 63.156 3.5231 0 0 0 0.39518 1 12879 12879 1.8442 0.19162 1 + 37550 31082 23777 23788 42728 42728 0.0652828863690047 RPPRTASL 8 Unmodified _RPPRTASL_ 0 0 0 ENST00000373640.4_1_2:231902852-231911612:+|nuORF;ENST00000477463.1_1_2:231902314-231911612:+|nuORF;ENST00000490967.5_1_22:31503065-31503518:-|nuORF ENST00000373640.4_1_2:231902852-231911612:+|nuORF ENST00000373640.4_1_2:231902852-231911612:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 449.26611328125 2 449.266876 896.519199 0.10209 4.5866E-05 -0.533 -0.00023946 -0.4309 -0.00019359 449.2665615079943 81.472 0.75276 84.959 84.543 85.296 3.4874 139 77 3 0 0 0 0.82752 1 20326 20326 7.9102 0 1 198560 37551 6418 23778 23789 42729 42729 0.06680026711467235 RPPRTASL 8 Unmodified _RPPRTASL_ 0 0 0 ENST00000373640.4_1_2:231902852-231911612:+|nuORF;ENST00000477463.1_1_2:231902314-231911612:+|nuORF;ENST00000490967.5_1_22:31503065-31503518:-|nuORF ENST00000373640.4_1_2:231902852-231911612:+|nuORF ENST00000373640.4_1_2:231902852-231911612:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 449.2671813964844 2 449.266876 896.519199 0.14449 6.4916E-05 -0.3134 -0.0001408 -0.16891 -7.5885E-05 449.26662690137067 81.133 0.77029 84.79 84.426 85.196 3.6567 160 99 3 0 0 0 0.82752 1 19192 19192 1.8442 0 1 272390 37552 6418 23778 23789 42730 42730 0.06680026711467235 RPPRVTTA 8 Unmodified _RPPRVTTA_ 0 0 0 REV__MLT1H_dup9794|chr22:23216574-23217058:-|1.1439996989374126|0.035154209848026|5.02|151.0|14|3|sense REV__MLT1H_dup9794|chr22:23216574-23217058:-|1.1439996989374126|0.035154209848026|5.02|151.0|14|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 449.26702880859375 2 449.266876 896.519199 -0.21915 -9.8457E-05 -0.0599 -2.6911E-05 -0.27905 -0.00012537 449.26677903874884 81.517 0.81082 84.841 84.498 85.308 3.3231 171 88 3 0 0 0 0.82752 1 20452 20452 2.0598 0.21551 1 142880 + 37553 31750 23779 23790 42731 42731 0.06680026711455866 RPPRWLPW 8 Unmodified _RPPRWLPW_ 0 0 0 ENST00000378347.2_1_16:89006323-89006479:+|nuORF ENST00000378347.2_1_16:89006323-89006479:+|nuORF ENST00000378347.2_1_16:89006323-89006479:+|nuORF MSMS UPN48_class_I_Rep_1 5 554.315673828125 2 554.314161 1106.61377 NaN NaN NaN NaN NaN NaN NaN 60.118 1 63.592 63.092 64.092 3.4737 0 0 0 0.40604 1 13269 13269 2.5775 0 1 37554 6468 23780 23791 42732 42732 0.06472585253436591 RPPSTMKG 8 Unmodified _RPPSTMKG_ 0 0 0 REV__ENSG00000204511|ENST00000376191|MCCD1 REV__ENSG00000204511|ENST00000376191|MCCD1 MSMS UPN47_class_I_Rep_1 2 437.23529052734375 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 44.425 1 48.12 47.62 48.62 3.6951 0 0 0 0.40746 1 9235 9235 0.69038 0 1 + 37555 21196 23781 23792 42733 42733 0.012492891941178641 RPPYLLNR 8 Unmodified _RPPYLLNR_ 0 0 0 REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF MSMS UPN46_class_I_Rep_3 1 514.805419921875 2 514.803626 1027.5927 NaN NaN NaN NaN NaN NaN NaN 15.585 1 15.585 15.085 16.085 0 0 0 0 0.40625 1 920 920 2.3027 1.6124 1 + 37556 21458 23782 23793 42734 42734 0.08000575153937461 RPQAPVCV 8 Unmodified _RPQAPVCV_ 0 0 0 nc|ENSG00000101546|Q8N0V3-2|RBFA nc|ENSG00000101546|Q8N0V3-2|RBFA nc|ENSG00000101546|Q8N0V3-2|RBFA MSMS UPN48_class_I_Rep_2 6 435.25091552734375 2 435.23673 868.458907 NaN NaN NaN NaN NaN NaN NaN 70.569 1 74.105 73.605 74.605 3.5359 0 0 0 0.40404 1 16423 16423 5.2307 0 1 37557 16651 23783 23794 42735 42735 0.01941593056722013 RPQDPVGSSLS 11 Unmodified _RPQDPVGSSLS_ 0 0 0 REV__AluJb_dup88518|chr13:28033382-28033672:+|1.6842194031427613|0.0052635940544551|8.32|150.0|7|2|sense REV__AluJb_dup88518|chr13:28033382-28033672:+|1.6842194031427613|0.0052635940544551|8.32|150.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 571.7960205078125 2 571.793652 1141.57275 NaN NaN NaN NaN NaN NaN NaN 54.399 1 57.585 57.085 58.085 3.1856 0 0 0 0.38417 1 12349 12349 0.96228 0.16864 1 + 37558 16970 23784 23795 42736 42736 0.007627346326898987 RPQFIVHY 8 Unmodified _RPQFIVHY_ 0 0 0 Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|107|1|anti-sense Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|107|1|anti-sense Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|107|1|anti-sense MSMS UPN46_class_I_Rep_3 1 530.73583984375 2 530.290351 1058.56615 NaN NaN NaN NaN NaN NaN NaN 115.55 1 115.55 115.05 116.05 0 0 0 0 0.40738 1 28581 28581 0.79363 0 1 37559 33306 23785 23796 42737 42737 0.03920886262608292 RPQHIRQKKKK 11 Unmodified _RPQHIRQKKKK_ 0 0 0 L1MD3_dup4950|chr19:54368998-54369238:-|1.0424467558055392|0.0666895461573621|3.97|149.0|13|1|anti-sense L1MD3_dup4950|chr19:54368998-54369238:-|1.0424467558055392|0.0666895461573621|3.97|149.0|13|1|anti-sense L1MD3_dup4950|chr19:54368998-54369238:-|1.0424467558055392|0.0666895461573621|3.97|149.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 482.9748840332031 3 482.975788 1445.90553 0.11343 5.4784E-05 -0.075422 -3.6427E-05 0.038008 1.8357E-05 483.3088914321587 50.714 1.0177 54.335 53.971 54.989 3.621 148 67 4 0 0 0 0.68478 1 10321 10321 0.094841 0 1 278440 37560 12077 23786 23797 42738 42738 0.20041698547561282 RPQPPKVLG 9 Unmodified _RPQPPKVLG_ 0 0 0 AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense;AluSx_dup36268|chr6:24810806-24811104:-|1.0169917282977778|0.214032583629061|2.25|151.0|21|2|anti-sense;AluJb_dup108043|chr17:44453542-44453832:-|1.108610623881304|0.0259044848214953|5.42|151.0|18|2|anti-sense;AluSx1_dup11362|chr2:47080494-47080801:-|1.0036142378960498|0.076206546041602|3.72|151.0|17|2|anti-sense;AluSx3_dup23560|chr14:45208331-45208631:-|1.0508914525743709|0.2591493822857291|2.02|151.0|14|1|anti-sense;AluSc_dup301|chr1:17418377-17418671:+|1.2359576391923697|0.1389905946015857|3.15|151.0|13|1|anti-sense AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 496.30401611328125 2 496.306001 990.597449 NaN NaN NaN NaN NaN NaN NaN 91.318 1 91.318 90.818 91.818 0 0 0 0 0.39428 1 22053 22053 2.0598 0 1 37561 366 23787 23798 42739 42739 0.10177459296710367 RPQPVLLEPA 10 Unmodified _RPQPVLLEPA_ 0 0 0 REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF MSMS UPN47_class_I_Rep_2 3 560.7703247070312 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 47.039 1 50.39 49.89 50.89 3.3515 0 0 0 0.53105 1 10064 10064 3.2813 1.4371 1 + 37562 22044 23788 23799 42740 42740 0.09021693777026485 RPQRCFLH 8 Unmodified _RPQRCFLH_ 0 0 0 HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|120|3|sense;HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|67|2|sense HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|120|3|sense HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|120|3|sense MSMS UPN48_class_I_Rep_1 5 528.7797241210938 2 528.779628 1055.5447 NaN NaN NaN NaN NaN NaN NaN 118.33 1 121.95 121.45 122.45 3.6189 0 0 0 0.40738 1 28859 28859 0.79363 0 1 37563 8140 23789 23800 42741 42741 0.019151779622461618 RPQRKGAYLK 10 Unmodified _RPQRKGAYLK_ 0 0 0 L1MC5a_dup8531|chr8:140631636-140631973:+|2.0219963652282265|0.018554971276761|6.77|151.0|3|1|sense L1MC5a_dup8531|chr8:140631636-140631973:+|2.0219963652282265|0.018554971276761|6.77|151.0|3|1|sense L1MC5a_dup8531|chr8:140631636-140631973:+|2.0219963652282265|0.018554971276761|6.77|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 406.2488708496094 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 80.229 1 83.873 83.373 84.373 3.6446 0 0 0 0.53105 1 19050 19050 0.69767 0.24315 1 37564 11768 23790 23801 42742 42742 0.12079296028105091 RPQRVRPGP 9 Unmodified _RPQRVRPGP_ 0 0 0 REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 531.8172607421875 2 531.817599 1061.62064 0.38183 0.00020307 -0.79831 -0.00042456 -0.41648 -0.00022149 531.8171173794542 79.197 0.43768 82.643 82.279 82.716 3.4456 53 33 2 0 0 0 0.48846 1 19687 19687 1.8442 0 1 123130 + 37565 21868 23791 23802 42743 42743 0.09229898134049108 RPQRVRPGP 9 Unmodified _RPQRVRPGP_ 0 0 0 REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 531.8177490234375 2 531.817599 1061.62064 0.33446 0.00017787 -0.75828 -0.00040327 -0.42382 -0.0002254 531.8170511313647 79.597 0.56979 82.952 82.771 83.341 3.3554 109 64 3 0 0 0 0.48846 1 19859 19859 1.8442 0 1 218240 + 37566 21868 23791 23802 42744 42744 0.09229898134049108 RPQRVRPGP 9 Unmodified _RPQRVRPGP_ 0 0 0 REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 531.8172607421875 2 531.817599 1061.62064 0.35201 0.0001872 -0.79193 -0.00042116 -0.43993 -0.00023396 531.8170853237852 79.499 0.50018 83.048 82.926 83.426 3.5487 99 55 2 0 0 0 0.48846 1 19063 19063 1.8442 0 1 181140 + 37567 21868 23791 23802 42745 42745 0.09229898134049108 RPQVVPVEG 9 Unmodified _RPQVVPVEG_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MSMS UPN47_class_I_Rep_3 4 490.7793273925781 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 21.062 1 24.411 23.911 24.911 3.3496 0 0 0 0.39428 1 2291 2291 2.0598 0 1 37568 4373 23792 23803 42746 42746 0.05448876163097793 RPQWFHCY 8 Unmodified _RPQWFHCY_ 0 0 0 L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|34|2|sense L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|34|2|sense L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|34|2|sense MSMS UPN47_class_I_Rep_3 4 568.75830078125 2 568.758361 1135.50217 NaN NaN NaN NaN NaN NaN NaN 111.63 1 115.15 114.65 115.65 3.5207 0 0 0 0.40604 1 27408 27408 2.5775 0 1 37569 8658 23793 23804 42747 42747 -0.06016217165984017 RPRAPSGHPCL 11 Unmodified _RPRAPSGHPCL_ 0 0 0 ENST00000167106.8_2_14:77228724-77228868:+|nuORF ENST00000167106.8_2_14:77228724-77228868:+|nuORF ENST00000167106.8_2_14:77228724-77228868:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 595.8170776367188 2 595.814199 1189.61384 0.43479 0.00025905 4.4571 0.0026556 4.8919 0.0029147 596.3178050849745 41.03 0.051292 44.536 44.497 44.548 3.506 5 4 2 0 0 0 22.551 1 7420 7420 1.1933 0.39971 1 45327 37570 5852 23794 23805 42748 42748 0.02662217191164018 RPRAPSGHPCL 11 Unmodified _RPRAPSGHPCL_ 0 0 0 ENST00000167106.8_2_14:77228724-77228868:+|nuORF ENST00000167106.8_2_14:77228724-77228868:+|nuORF ENST00000167106.8_2_14:77228724-77228868:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 595.814199 1189.61384 -0.0044227 -2.6351E-06 0.2146 0.00012786 0.21018 0.00012523 595.8138459843069 40.962 0.03363 44.634 44.603 44.637 3.6719 0.048917 -0.001986 NaN 1.1933 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 26434 37571 5852 23794 23805 0.02662217191164018 RPRDIVYI 8 Unmodified _RPRDIVYI_ 0 0 0 ENST00000406189.3_1_18:48702442-48702544:-|nuORF ENST00000406189.3_1_18:48702442-48702544:-|nuORF ENST00000406189.3_1_18:48702442-48702544:-|nuORF MSMS UPN47_class_I_Rep_1 2 516.3052978515625 2 516.303458 1030.59236 NaN NaN NaN NaN NaN NaN NaN 31.054 1 34.784 34.284 35.284 3.7293 0 0 0 0.40738 1 5158 5158 0.79363 0 1 37572 6611 23795 23806 42749 42749 0.07829155434069435 RPRHLRVPL 9 Unmodified _RPRHLRVPL_ 0 0 0 REV__ENST00000340083.5_1_4:3478258-3494489:+|nuORF REV__ENST00000340083.5_1_4:3478258-3494489:+|nuORF MSMS UPN47_class_I_Rep_3 4 572.3648071289062 2 572.364716 1142.71488 NaN NaN NaN NaN NaN NaN NaN 94.565 1 97.972 97.472 98.472 3.4068 0 0 0 0.40038 1 23531 23531 0.6015 0.076735 1 + 37573 21814 23796 23807 42750 42750 0.14923036956179203 RPRIVHLH 8 Unmodified _RPRIVHLH_ 0 0 0 L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|144|2|anti-sense L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|144|2|anti-sense L1M2b_dup69|chr5:94658458-94661491:-|1.363226864449679|0.0633623729456855|4.43|151.0|144|2|anti-sense MSMS UPN47_class_I_Rep_3 4 514.3160400390625 2 514.317235 1026.61992 NaN NaN NaN NaN NaN NaN NaN 29.1 1 32.423 31.923 32.923 3.3235 0 0 0 0.40738 1 4656 4656 0.79363 0 1 37574 8747 23797 23808 42751 42751 0.1076710348497727 RPRKFLCH 8 Unmodified _RPRKFLCH_ 0 0 0 REV__ENST00000258526.8_1_12:94699066-94699216:+|nuORF REV__ENST00000258526.8_1_12:94699066-94699216:+|nuORF MSMS UPN48_class_I_Rep_1 5 528.7974853515625 2 528.79782 1055.58109 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.66 117.16 118.16 3.6301 0 0 0 0.40738 1 27714 27714 0.79363 0 1 + 37575 21543 23798 23809 42752 42752 0.055520548589583996 RPRKFLCH 8 Unmodified _RPRKFLCH_ 0 0 0 REV__ENST00000258526.8_1_12:94699066-94699216:+|nuORF REV__ENST00000258526.8_1_12:94699066-94699216:+|nuORF MSMS UPN48_class_I_Rep_3 7 528.7984008789062 2 528.79782 1055.58109 NaN NaN NaN NaN NaN NaN NaN 114.71 1 118.36 117.86 118.86 3.6511 0 0 0 0.40738 1 27282 27282 0.79363 0 1 + 37576 21543 23798 23809 42753 42753 0.055520548589583996 RPRKRRRPRPR 11 Unmodified _RPRKRRRPRPR_ 0 0 0 ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C ENSG00000133247|ENST00000255613|KMT5C MSMS UPN48_class_I_Rep_2 6 511.29498291015625 3 510.997809 1529.9716 NaN NaN NaN NaN NaN NaN NaN 42.358 1 46.116 45.616 46.616 3.7579 0 0 0 0.38417 1 7833 7833 0 0 1 37577 2797 23799 23810 42754 42754 0.22780952233006246 RPRLCLKRK 9 Unmodified _RPRLCLKRK_ 0 0 0 AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 585.3741455078125 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 22.287 1 25.962 25.462 26.462 3.6749 0 0 0 0.4029 1 2567 2567 0 0 1 37578 354 23800 23811 42755 42755 0.15628250255554121 RPRLCLKRK 9 Unmodified _RPRLCLKRK_ 0 0 0 AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 585.3744506835938 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 25.701 1 29.268 28.768 29.768 3.5667 0 0 0 0.4029 1 3036 3036 0 0 1 37579 354 23800 23811 42756 42756 0.15628250255554121 RPRLCLKRK 9 Unmodified _RPRLCLKRK_ 0 0 0 AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense AluSz_dup57111|chr10:17450441-17450741:-|1.189328379676947|0.1054094065435953|3.5|144.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 585.374267578125 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 34.671 1 38.344 37.844 38.844 3.6735 0 0 0 0.4029 1 5614 5614 0 0 1 37580 354 23800 23811 42757 42757 0.15628250255554121 RPRLPVYHQR 10 Unmodified _RPRLPVYHQR_ 0 0 0 L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|224|1|anti-sense L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|224|1|anti-sense L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|224|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2575988769531 3 441.258184 1320.75272 -0.075593 -3.3356E-05 0.15158 6.6885E-05 0.075984 3.3529E-05 441.5925830004175 31.037 0.32605 31.037 30.839 31.165 0 43 27 2 0 0 0 0.56072 1 5151 5151 3.3196 0 1 118330 37581 13541 23801 23812 42758 42758 0.10517503150958873 RPRLPVYHQR 10 Unmodified _RPRLPVYHQR_ 0 0 0 L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|224|1|anti-sense L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|224|1|anti-sense L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|224|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.25732421875 3 441.258184 1320.75272 NaN NaN NaN NaN NaN NaN NaN 30.903 1 30.903 30.403 31.403 0 0 0 0 0.53105 1 5095 5095 1.9064 0 1 37582 13541 23801 23812 42759 42759 0.10517503150958873 RPRMIRRKH 9 Unmodified _RPRMIRRKH_ 0 0 0 REV__L1MEd_dup19564|chr18:13518034-13519283:-|1.0341877785724607|0.055952668828091|4.21|151.0|26|2|sense REV__L1MEd_dup19564|chr18:13518034-13519283:-|1.0341877785724607|0.055952668828091|4.21|151.0|26|2|sense MSMS UPN46_class_I_Rep_3 1 625.379638671875 2 625.380375 1248.7462 NaN NaN NaN NaN NaN NaN NaN 104.41 1 104.41 103.91 104.91 0 0 0 0 0.4007 1 25494 25494 0.52476 0 1 + 37583 28558 23802 23813 42760 42760 0.13177286718610048 RPRNPVSL 8 Unmodified _RPRNPVSL_ 0 0 0 REV__ENSG00000078269|ENST00000355585|SYNJ2 REV__ENSG00000078269|ENST00000355585|SYNJ2 MSMS UPN46_class_I_Rep_3 1 469.77874755859375 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 87.543 1 87.543 87.043 88.043 0 0 0 0 0.40604 1 20981 20981 2.5775 0 1 + 37584 17885 23803 23814 42761 42761 0.0744771560279105 RPRPFSLP 8 Unmodified _RPRPFSLP_ 0 0 0 ENST00000237455.4_1_2:86849944-86850244:-|nuORF ENST00000237455.4_1_2:86849944-86850244:-|nuORF ENST00000237455.4_1_2:86849944-86850244:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.28594970703125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 33.01 1 36.66 36.16 37.16 3.6497 0 0 0 0.40746 1 5165 5165 0.69038 0 1 37585 5895 23804 23815 42762 42762 0.07004903608185487 RPRPMPFG 8 Unmodified _RPRPMPFG_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MSMS UPN47_class_I_Rep_1 2 479.2580871582031 2 479.257997 956.501441 NaN NaN NaN NaN NaN NaN NaN 111.19 1 114.76 114.26 115.26 3.572 0 0 0 0.40738 1 27418 27418 0.79363 0 1 + 37586 21369 23805 23816 42763 42763 0.021449881849662233 RPRPMPFG 8 Unmodified _RPRPMPFG_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MSMS UPN47_class_I_Rep_1 2 479.25897216796875 2 479.257997 956.501441 NaN NaN NaN NaN NaN NaN NaN 117.77 1 121.37 120.87 121.87 3.6036 0 0 0 0.40738 1 29204 29204 0.79363 0 1 + 37587 21369 23805 23816 42764 42764 0.021449881849662233 RPRPNTMFL 9 Unmodified _RPRPNTMFL_ 0 0 0 REV__L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|17|1|sense REV__L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|17|1|sense MSMS UPN48_class_I_Rep_2 6 566.6411743164062 2 566.308218 1130.60188 NaN NaN NaN NaN NaN NaN NaN 99.777 1 103.53 103.03 104.03 3.7575 0 0 0 0.39428 1 23699 23699 2.0598 0 1 + 37588 30012 23806 23817 42765 42765 0.041806004479667536 RPRQKLVKCDK 11 Unmodified _RPRQKLVKCDK_ 0 0 0 REV__nc|ENSG00000153922|O14646-2|CHD1 REV__nc|ENSG00000153922|O14646-2|CHD1 MSMS UPN46_class_I_Rep_3 1 457.6080017089844 3 457.606484 1369.79762 NaN NaN NaN NaN NaN NaN NaN 107.08 1 107.08 106.58 107.58 0 0 0 0 0.38417 1 26120 26120 0.45452 0.29519 1 + 37589 19721 23807 23818 42766 42766 0.1275156590199913 RPRRFYYF 8 Unmodified _RPRRFYYF_ 0 0 0 REV__AluJo_dup53442|chr13:28209827-28210081:-|1.3966061361821196|0.0091830327441565|7.25|151.0|11|3|sense REV__AluJo_dup53442|chr13:28209827-28210081:-|1.3966061361821196|0.0091830327441565|7.25|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 602.8211669921875 2 602.82235 1203.63015 NaN NaN NaN NaN NaN NaN NaN 106.22 1 106.22 105.72 106.72 0 0 0 0 0.40746 1 25905 25905 0.69038 0.16561 1 + 37590 17008 23808 23819 42767 42767 0.03647666419556117 RPRRNVGIWK 10 Unmodified _RPRRNVGIWK_ 0 0 0 REV__nc|ENSG00000148120|Q8N6M6-4|AOPEP REV__nc|ENSG00000148120|Q8N6M6-4|AOPEP MSMS UPN46_class_I_Rep_3 1 641.38623046875 2 641.38618 1280.75781 NaN NaN NaN NaN NaN NaN NaN 98.408 1 98.408 97.908 98.908 0 0 0 0 0.53105 1 23958 23958 1.4819 0.15237 1 + 37591 19577 23809 23820 42768 42768 0.12865807013577069 RPRRRKLLAR 10 Unmodified _RPRRRKLLAR_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN48_class_I_Rep_1 5 441.2977294921875 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 60.114 1 63.588 63.088 64.088 3.4737 0 0 0 0.53105 1 13268 13268 0.15932 0.064481 1 + 37592 31946 23810 23821 42769 42769 0.22148866441557402 RPRRRKLLAR 10 Unmodified _RPRRRKLLAR_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN48_class_I_Rep_1 5 441.29736328125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 82.385 1 85.96 85.46 86.46 3.5753 0 0 0 0.53105 1 19672 19672 0.13989 0.04505 1 + 37593 31946 23810 23821 42770 42770 0.22148866441557402 RPRRRKLLAR 10 Unmodified _RPRRRKLLAR_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS UPN48_class_I_Rep_2 6 441.2975158691406 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 60.823 1 64.301 63.801 64.801 3.4785 0 0 0 0.53105 1 13461 13461 0.15932 0.01943 1 + 37594 31946 23810 23821 42771 42771 0.22148866441557402 RPRRSRTLPM 10 Unmodified _RPRRSRTLPM_ 0 0 0 REV__nc|ENSG00000160949|Q96HA7-2|TONSL REV__nc|ENSG00000160949|Q96HA7-2|TONSL MSMS UPN47_class_I_Rep_1 2 635.3709716796875 2 635.369672 1268.72479 NaN NaN NaN NaN NaN NaN NaN 95.437 1 99.201 98.701 99.701 3.7648 0 0 0 0.53105 1 23692 23692 1.4819 0 1 + 37595 19897 23811 23822 42772 42772 0.1011785689925091 RPRVVAHF 8 Unmodified _RPRVVAHF_ 0 0 0 ENST00000499077.2_2_3:131080852-131082214:+|nuORF ENST00000499077.2_2_3:131080852-131082214:+|nuORF ENST00000499077.2_2_3:131080852-131082214:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 491.79559326171875 2 491.290685 980.566818 0.096751 4.7533E-05 -1.3654 -0.0006708 -1.2686 -0.00062327 491.28912499442134 53.518 0.69637 57.101 56.767 57.464 3.5836 105 54 3 0 0 0 0.82752 1 11158 11158 5.7604 1.0044 1 627310 37596 7124 23812 23823 42773 42773 0.07575725702315594 RPRYGPLTPW 10 Unmodified _RPRYGPLTPW_ 0 0 0 ENST00000568316.1_1_16:24551227-24551584:+|nuORF ENST00000568316.1_1_16:24551227-24551584:+|nuORF ENST00000568316.1_1_16:24551227-24551584:+|nuORF MSMS UPN48_class_I_Rep_2 6 414.9084777832031 3 414.896252 1241.66693 NaN NaN NaN NaN NaN NaN NaN 29.466 1 33.098 32.598 33.598 3.6316 0 0 0 0.53105 1 4190 4190 1.9064 0.1641 1 37597 7502 23813 23824 42774 42774 0.055759182454494294 RPSAVLVPQP 10 Unmodified _RPSAVLVPQP_ 0 0 0 REV__L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|127|2|anti-sense REV__L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|127|2|anti-sense MSMS UPN46_class_I_Rep_3 1 532.3164672851562 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 31.213 1 31.213 30.713 31.713 0 0 0 0 0.53105 1 5185 5185 3.5965 1.019 1 + 37598 30280 23814 23825 42775 42775 0.0897742460556401 RPSKKDIYKM 10 Unmodified _RPSKKDIYKM_ 0 0 0 L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|20|2|sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|20|2|sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 633.3693237304688 2 633.355365 1264.69618 NaN NaN NaN NaN NaN NaN NaN 87.523 1 90.911 90.411 91.411 3.3873 0 0 0 0.53105 1 21933 21933 1.4819 0.15237 1 37599 9964 23815 23826 42776 42776 0.0744169447943932 RPSKSYRSF 9 Unmodified _RPSKSYRSF_ 0 0 0 REV__ENST00000241527.10_1_2:242035813-242036773:-|nuORF REV__ENST00000241527.10_1_2:242035813-242036773:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.3031616210938 2 564.301447 1126.58834 NaN NaN NaN NaN NaN NaN NaN 67.674 1 71.126 70.626 71.626 3.4517 0 0 0 0.38916 1 15573 15573 3.2813 0.28607 1 + 37600 21507 23816 23827 42777 42777 0.030110659403817408 RPSLNSVSL 9 Unmodified _RPSLNSVSL_ 0 0 0 nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1 nc|ENSG00000164741|Q96QB1-4|DLC1 nc|ENSG00000164741|Q96QB1-4|DLC1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.7771911621094 2 486.777274 971.539994 -0.38738 -0.00018857 0.091495 4.4537E-05 -0.29588 -0.00014403 486.77727828527213 35.564 1.007 38.819 38.467 39.474 3.2547 165 70 3 0 0 0 0.37599 1 6761 6761 9.3831 0 1 680830 37601 4127 23817 23828 42778 42778 0.05308572300486958 RPSMKGMTKPI 11 Unmodified _RPSMKGMTKPI_ 0 0 0 REV__THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|27|2|sense REV__THE1A-int_dup533|chr5:100881998-100883572:+|1.5321427213523886|0.0285171702868372|5.75|151.0|27|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 623.3892211914062 2 623.343943 1244.67333 0.55194 0.00034405 0.28008 0.00017458 0.83202 0.00051863 623.3439904265035 108.53 0.13068 112.17 112.08 112.21 3.6355 18 13 2 0 0 0 22.551 1 26690 26690 2.7352 0 1 9082900 + 37602 32215 23818 23829 42779 42779 0.060783520903214594 RPSPLPYLY 9 Unmodified _RPSPLPYLY_ 0 0 0 ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 553.3050537109375 2 553.305667 1104.59678 0.16044 8.8772E-05 -0.38568 -0.0002134 -0.22524 -0.00012463 553.3054304752067 30.447 0.37086 30.447 30.246 30.617 0 49 27 2 0 0 0 0.48846 1 4962 4962 1.8442 0.51471 1 77808 37603 4827 23819 23830 42780 42780 0.048666198569890184 RPSPPQLSDL 10 Unmodified _RPSPPQLSDL_ 0 0 0 REV__AluSx_dup85619|chr14:102596876-102597168:-|1.015041648427637|0.0072954293773863|7.12|151.0|11|1|anti-sense REV__AluSx_dup85619|chr14:102596876-102597168:-|1.015041648427637|0.0072954293773863|7.12|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.3018188476562 2 555.301113 1108.58767 NaN NaN NaN NaN NaN NaN NaN 59.18 1 62.679 62.179 63.179 3.4987 0 0 0 0.53105 1 12958 12958 2.4985 0.19575 1 + 37604 17155 23820 23831 42781 42781 0.03772226500677789 RPSRAEWVTP 10 Unmodified _RPSRAEWVTP_ 0 0 0 REV__MLT1C_dup17062|chr17:57461926-57462250:-|2.114578391707808|0.0099486424158401|7.73|151.0|17|3|anti-sense REV__MLT1C_dup17062|chr17:57461926-57462250:-|2.114578391707808|0.0099486424158401|7.73|151.0|17|3|anti-sense MSMS UPN47_class_I_Rep_3 4 600.3009033203125 2 599.820004 1197.62546 NaN NaN NaN NaN NaN NaN NaN 47.102 1 50.346 49.846 50.846 3.2439 0 0 0 0.53105 1 10136 10136 1.3295 0.13619 1 + 37605 31641 23821 23832 42782 42782 0.03454737486117665 RPSRRARLTR 10 Unmodified _RPSRRARLTR_ 0 0 0 REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.8931884765625 2 634.892161 1267.76977 0.56744 0.00036026 1.3837 0.00087848 1.9511 0.0012387 634.8926181263143 98.2 0.25562 101.99 101.79 102.04 3.7861 58 34 2 0 0 0 0.56333 1 24281 24281 1.4819 0.28856 1 186590 + 37606 21476 23822 23833 42783 42783 0.14659423756779688 RPSRRARLTR 10 Unmodified _RPSRRARLTR_ 0 0 0 REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 634.8930053710938 2 634.892161 1267.76977 0.51356 0.00032606 1.3854 0.00087959 1.899 0.0012056 634.8927114424824 98.265 0.20894 101.7 101.53 101.74 3.4328 43 27 2 0 0 0 0.56333 1 24314 24314 1.4819 0.28856 1 182600 + 37607 21476 23822 23833 42784 42784 0.14659423756779688 RPSSKVVLPVS 11 Unmodified _RPSSKVVLPVS_ 0 0 0 L1ME2_dup2394|chr3:11549522-11550267:-|1.525477709465463|0.2002676705284098|2.93|151.0|40|2|anti-sense L1ME2_dup2394|chr3:11549522-11550267:-|1.525477709465463|0.2002676705284098|2.93|151.0|40|2|anti-sense L1ME2_dup2394|chr3:11549522-11550267:-|1.525477709465463|0.2002676705284098|2.93|151.0|40|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.8563232421875 2 584.856055 1167.69756 0.40699 0.00023803 0.26181 0.00015312 0.6688 0.00039115 584.8561228841853 107.88 0.32777 111.51 111.43 111.76 3.6313 99 28 5 0 0 0 0.40526 1 26076 26076 10.151 1.4052 1 26504000 37608 12498 23823 23834 42785 42785 0.12041651839831502 RPSSLFKR 8 Unmodified _RPSSLFKR_ 0 0 0 REV__L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|347|3|anti-sense REV__L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|347|3|anti-sense MSMS UPN47_class_I_Rep_1 2 495.79608154296875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.574 1 79.989 79.489 80.489 3.4149 0 0 0 0.40738 1 18957 18957 0.79363 0 1 + 37609 26413 23824 23835 42786 42786 0.08184288636903148 RPSTRLFV 8 Unmodified _RPSTRLFV_ 0 0 0 REV__MER21B_dup1706|chr10:95887962-95888783:+|1.123597853811245|0.1812515402718624|2.63|149.0|54|3|anti-sense REV__MER21B_dup1706|chr10:95887962-95888783:+|1.123597853811245|0.1812515402718624|2.63|149.0|54|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.29058837890625 2 488.290351 974.566149 0.45721 0.00022325 -0.15932 -7.7792E-05 0.2979 0.00014546 488.2901798664824 107.82 0.22454 111.35 111.28 111.5 3.5345 64 25 4 0 0 0 0.82752 1 26127 26127 6.7232 0 1 75515000 + 37610 31199 23825 23836 42787 42787 0.0778488626260696 RPSVVLKELQ 10 Unmodified _RPSVVLKELQ_ 0 0 0 REV__MER61-int_dup352|chr4:143429404-143432009:-|1.882899677908966|0.2799642110682148|2.75|151.0|97|3|sense REV__MER61-int_dup352|chr4:143429404-143432009:-|1.882899677908966|0.2799642110682148|2.75|151.0|97|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.853759765625 2 584.856055 1167.69756 0.52793 0.00030876 -1.597 -0.00093403 -1.0691 -0.00062527 584.8549760873274 108 0.36828 108 107.93 108.29 0 49 29 3 0 0 0 0.4561 1 26388 26388 15.248 0.41021 1 19928000 + 37611 31498 23826 23837 42788 42788 0.1204165183985424 RPSVVLKELQ 10 Unmodified _RPSVVLKELQ_ 0 0 0 REV__MER61-int_dup352|chr4:143429404-143432009:-|1.882899677908966|0.2799642110682148|2.75|151.0|97|3|sense REV__MER61-int_dup352|chr4:143429404-143432009:-|1.882899677908966|0.2799642110682148|2.75|151.0|97|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 584.8564453125 2 584.856055 1167.69756 0.49979 0.00029231 0.34547 0.00020205 0.84526 0.00049436 584.8560419108055 107.86 0.31587 111.52 111.46 111.78 3.6602 41 20 5 0 0 0 0.4561 1 26451 26451 15.248 0.41021 1 15604000 + 37612 31498 23826 23837 42789 42789 0.1204165183985424 RPTGTNLVY 9 Unmodified _RPTGTNLVY_ 0 0 0 REV__L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|75|2|sense REV__L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|75|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.7781982421875 2 510.777274 1019.53999 0.13846 7.072E-05 -0.082428 -4.2102E-05 0.056028 2.8618E-05 510.7771347038273 46.828 0.68089 50.071 49.715 50.396 3.2439 70 41 2 0 0 0 0.37599 1 9986 9986 9.3831 0.035688 1 174320 + 37613 29676 23827 23838 42790 42790 0.031005723004682295 RPTKVIPT 8 Unmodified _RPTKVIPT_ 0 0 0 PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|81|1|anti-sense PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|81|1|anti-sense PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_1 2 456.2875671386719 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 23.469 1 27.173 26.673 27.673 3.7042 0 0 0 0.40625 1 2905 2905 2.3027 0 1 37614 16887 23828 23839 42791 42791 0.10114368031076992 RPTRCETL 8 Unmodified _RPTRCETL_ 0 0 0 REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|36|2|sense REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 488.2532653808594 2 488.255651 974.496749 NaN NaN NaN NaN NaN NaN NaN 77.448 1 80.877 80.377 81.377 3.4289 0 0 0 0.40292 1 19216 19216 6.7232 0.99131 1 + 37615 28706 23829 23840 42792 42792 0.008480592515411445 RPTRKCLI 8 Unmodified _RPTRKCLI_ 0 0 0 REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|130|3|sense REV__L1PA7_dup5685|chr6:144502261-144508692:-|2.451907356545659|0.2128231448572951|3.53|151.0|130|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.2970886230469 2 493.800029 985.585505 0.17964 8.8706E-05 -3.4185 -0.0016881 -3.2389 -0.0015994 493.8008987058098 78.232 0.56379 81.661 81.376 81.94 3.4289 130 55 3 0 0 0 0.82752 1 19387 19387 2.5775 0 1 225320 + 37616 30136 23830 23841 42793 42793 0.09213519281854587 RPTRLVSLL 9 Unmodified _RPTRLVSLL_ 0 0 0 REV__ENST00000471473.1_1_1:65309838-65309892:-|nuORF REV__ENST00000471473.1_1_1:65309838-65309892:-|nuORF MSMS UPN47_class_I_Rep_2 3 527.8390502929688 2 527.840208 1053.66586 NaN NaN NaN NaN NaN NaN NaN 89.051 1 92.504 92.004 93.004 3.4525 0 0 0 0.39518 1 22131 22131 1.8442 0 1 + 37617 22503 23831 23842 42794 42794 0.14117703876559062 RPVAAAAAAAA 11 Unmodified _RPVAAAAAAAA_ 0 0 0 REV__ENSG00000124813.23,RUNX2,chr6,+,I8.1,45512408,45513449|72|14.03|6|intron REV__ENSG00000124813.23,RUNX2,chr6,+,I8.1,45512408,45513449|72|14.03|6|intron MULTI-MSMS UPN48_class_I_Rep_3 7 470.2721862792969 2 470.272158 938.529764 0.23272 0.00010944 -0.29232 -0.00013747 -0.059597 -2.8027E-05 470.2719431981355 82.941 0.68389 86.647 86.372 87.056 3.7066 196 91 3 0 0 0 0.68583 1 19598 19598 0 0 1 367930 + 37618 18820 23832 23843 42795 42795 0.05804009365874663 RPVCMFPF 8 Unmodified _RPVCMFPF_ 0 0 0 L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|272|3|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|272|3|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|272|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 498.7436218261719 2 498.743334 995.472114 0.27928 0.00013929 -0.21353 -0.0001065 0.065744 3.2789E-05 498.74318410977685 85.938 0.6502 89.708 89.423 90.073 3.7701 155 76 3 0 0 0 0.82752 1 20367 20367 0.79363 0 1 408700 37619 9824 23833 23844 42796 42796 -0.02580292155528241 RPVGRKKK 8 Unmodified _RPVGRKKK_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS UPN48_class_I_Rep_2 6 484.8258972167969 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 26.004 1 29.638 29.138 30.138 3.6332 0 0 0 0.40738 1 3250 3250 0.79363 0 1 + 37620 19347 23834 23845 42797 42797 0.15520274144785162 RPVHKYLFN 9 Unmodified _RPVHKYLFN_ 0 0 0 REV__ENST00000599239.5_1_19:48565437-48599986:-|nuORF REV__ENST00000599239.5_1_19:48565437-48599986:-|nuORF MSMS UPN46_class_I_Rep_3 1 587.3281860351562 2 587.330008 1172.64546 NaN NaN NaN NaN NaN NaN NaN 65.303 1 65.303 64.803 65.803 0 0 0 0 0.39518 1 14754 14754 1.8442 0.36234 1 + 37621 23205 23835 23846 42798 42798 0.06604533216750497 RPVKFKAA 8 Unmodified _RPVKFKAA_ 0 0 0 ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|1|intron;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|2|intron;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|3|intron;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|5|intron;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|6|intron;ENSG00000131725.14,WDR44,chrX,+,I13.1,118432895,118436701|43|6.2|2|intron;nc|ENSG00000131725|Q5JSH3-3|WDR44;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|7|intron;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|8|intron;ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|4|intron;ENSG00000131725.14,WDR44,chrX,+,I13.1,118432895,118436701|43|6.2|1|intron;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44 ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|1|intron ENSG00000131725.14,WDR44,chrX,+,I11.1,118409628,118410894|83|5.38|1|intron MSMS UPN48_class_I_Rep_3 7 458.78887939453125 2 458.789987 915.565421 NaN NaN NaN NaN NaN NaN NaN 84.662 1 88.411 87.911 88.911 3.7494 0 0 0 0.40604 1 20092 20092 2.5775 1.7838 1 37622 2719 23836 23847 42799 42799 0.10426091613555855 RPVKPLPH 8 Unmodified _RPVKPLPH_ 0 0 0 MER107_dup115|chr7:56100930-56101106:+|1.5014811723451087|0.0566950237540415|4.73|151.0|2|1|sense MER107_dup115|chr7:56100930-56101106:+|1.5014811723451087|0.0566950237540415|4.73|151.0|2|1|sense MER107_dup115|chr7:56100930-56101106:+|1.5014811723451087|0.0566950237540415|4.73|151.0|2|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 471.79547119140625 2 472.295436 942.57632 0.03121 1.474E-05 0.011419 5.3932E-06 0.042629 2.0134E-05 472.29496832410473 52.846 0.10221 56.405 56.372 56.474 3.5585 8 5 2 0 0 0 0.72333 1 11811 11811 0.69038 0 1 52508 37623 15767 23837 23848 42800 42800 0.1027349398784736 RPVKRIIRVL 10 Unmodified _RPVKRIIRVL_ 0 0 0 REV__MER20_dup694|chr1:150612716-150612910:+|1.8405351529641545|0.4354318992432461|2.08|151.0|11|2|anti-sense REV__MER20_dup694|chr1:150612716-150612910:+|1.8405351529641545|0.4354318992432461|2.08|151.0|11|2|anti-sense MSMS UPN46_class_I_Rep_3 1 625.8638916015625 2 625.432599 1248.85064 NaN NaN NaN NaN NaN NaN NaN 109.08 1 109.08 108.58 109.58 0 0 0 0 0.53105 1 26735 26735 3.5965 0 1 + 37624 31158 23838 23849 42801 42801 0.23617311746966152 RPVKVYRN 8 Unmodified _RPVKVYRN_ 0 0 0 REV__ENSG00000184903|ENST00000405709|IMMP2L REV__ENSG00000184903|ENST00000405709|IMMP2L MSMS UPN46_class_I_Rep_3 1 516.3093872070312 2 516.309075 1030.6036 NaN NaN NaN NaN NaN NaN NaN 100.06 1 100.06 99.563 100.56 0 0 0 0 0.40738 1 24389 24389 0.79363 0 1 + 37625 20833 23839 23850 42802 42802 0.08951977528226962 RPVLAGGPFL 10 Unmodified _RPVLAGGPFL_ 0 0 0 REV__ENST00000475309.5_1_7:5257468-5257723:+|nuORF REV__ENST00000475309.5_1_7:5257468-5257723:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.8068237304688 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 77.635 1 80.967 80.467 81.467 3.3315 0 0 0 0.53105 1 19268 19268 4.3292 0.73274 1 + 37626 22532 23840 23851 42803 42803 0.09042343439477918 RPVNFSSFFY 10 Unmodified _RPVNFSSFFY_ 0 0 0 L1MC5a_dup1059|chr1:235296869-235298289:+|3.4525887704809186|0.027507883783888|6.97|151.0|66|1|anti-sense L1MC5a_dup1059|chr1:235296869-235298289:+|3.4525887704809186|0.027507883783888|6.97|151.0|66|1|anti-sense L1MC5a_dup1059|chr1:235296869-235298289:+|3.4525887704809186|0.027507883783888|6.97|151.0|66|1|anti-sense MSMS UPN48_class_I_Rep_1 5 632.3120727539062 2 632.31148 1262.60841 NaN NaN NaN NaN NaN NaN NaN 50.048 1 53.573 53.073 54.073 3.5246 0 0 0 0.53105 1 10180 10180 1.3295 0 1 37627 11706 23841 23852 42804 42804 -0.012391831196737257 RPVPGLPP 8 Unmodified _RPVPGLPP_ 0 0 0 ENST00000433867.5_3_19:47219551-47220301:-|nuORF ENST00000433867.5_3_19:47219551-47220301:-|nuORF ENST00000433867.5_3_19:47219551-47220301:-|nuORF MSMS UPN48_class_I_Rep_1 5 416.75628662109375 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.16 1 112.79 112.29 113.29 3.6321 0 0 0 0.40738 1 26492 26492 0.79363 0 1 37628 6742 23842 23853 42805 42805 0.07418427313859866 RPVPGLPP 8 Unmodified _RPVPGLPP_ 0 0 0 ENST00000433867.5_3_19:47219551-47220301:-|nuORF ENST00000433867.5_3_19:47219551-47220301:-|nuORF ENST00000433867.5_3_19:47219551-47220301:-|nuORF MSMS UPN48_class_I_Rep_1 5 416.75634765625 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.17 1 112.8 112.3 113.3 3.6321 0 0 0 0.40738 1 26497 26497 0.79363 0 1 37629 6742 23842 23853 42806 42806 0.07418427313859866 RPVPKATI 8 Unmodified _RPVPKATI_ 0 0 0 REV__chr11:6616503-6616975|122|16.84|0.63|4.75|-|1|TPP1,TPP1|1 REV__chr11:6616503-6616975|122|16.84|0.63|4.75|-|1|TPP1,TPP1|1 MSMS UPN48_class_I_Rep_3 7 441.2973937988281 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 63.79 1 67.299 66.799 67.799 3.5083 0 0 0 0.40746 1 14290 14290 0.69038 0 1 + 37630 17429 23843 23854 42807 42807 0.10438385376664883 RPVPYPPVVEL 11 Unmodified _RPVPYPPVVEL_ 0 0 0 L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|82|2|anti-sense L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|82|2|anti-sense L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_1 2 633.3679809570312 2 633.366256 1264.71796 NaN NaN NaN NaN NaN NaN NaN 89.4 1 93.074 92.574 93.574 3.6738 0 0 0 0.3803 1 22355 22355 5.2969 1.3525 1 37631 9596 23844 23855 42808 42808 0.0961882249964674 RPVRGGLG 8 Unmodified _RPVRGGLG_ 0 0 0 nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1 nc|ENSG00000144749|Q96JA1-2|LRIG1 nc|ENSG00000144749|Q96JA1-2|LRIG1 MSMS UPN47_class_I_Rep_2 3 406.2488708496094 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 80.982 1 84.366 83.866 84.866 3.3839 0 0 0 0.40746 1 20165 20165 0.69038 0 1 37632 3373 23845 23856 42809 42809 0.06959774885581282 RPVRMRPG 8 Unmodified _RPVRMRPG_ 0 0 0 ENST00000552885.2_1_12:80328990-80329323:+|nuORF ENST00000552885.2_1_12:80328990-80329323:+|nuORF ENST00000552885.2_1_12:80328990-80329323:+|nuORF MSMS UPN48_class_I_Rep_2 6 484.78240966796875 2 484.78217 967.549788 NaN NaN NaN NaN NaN NaN NaN 114.7 1 118.36 117.86 118.86 3.6616 0 0 0 0.40738 1 27428 27428 0.79363 0 1 37633 7410 23846 23857 42810 42810 0.06471481824871717 RPVRPVEE 8 Unmodified _RPVRPVEE_ 0 0 0 REV__ENSG00000198844|ENST00000361926|ARHGEF15 REV__ENSG00000198844|ENST00000361926|ARHGEF15 MSMS UPN47_class_I_Rep_1 2 491.2792053222656 2 491.277441 980.540328 NaN NaN NaN NaN NaN NaN NaN 68.201 1 71.565 71.065 72.065 3.3646 0 0 0 0.40625 1 16448 16448 2.3027 0 1 + 37634 21155 23847 23858 42811 42811 0.04927992020327565 RPWHLLLPS 9 Unmodified _RPWHLLLPS_ 0 0 0 L1PA15_dup5899|chr10:92677732-92678234:+|1.6365776683300923|0.0541808940308571|4.92|151.0|31|2|anti-sense L1PA15_dup5899|chr10:92677732-92678234:+|1.6365776683300923|0.0541808940308571|4.92|151.0|31|2|anti-sense L1PA15_dup5899|chr10:92677732-92678234:+|1.6365776683300923|0.0541808940308571|4.92|151.0|31|2|anti-sense MSMS UPN46_class_I_Rep_3 1 559.8253784179688 2 559.827101 1117.63965 NaN NaN NaN NaN NaN NaN NaN 109.19 1 109.19 108.69 109.69 0 0 0 0 0.29868 1 26780 26780 10.824 1.4408 1 37635 13956 23848 23859 42812 42812 0.08553434705095242 RPWRMKHY 8 Unmodified _RPWRMKHY_ 0 0 0 MLT1F_dup3659|chr17:10193422-10193946:+|1.4314665862336369|0.0037291429207947|8.58|151.0|10|2|sense MLT1F_dup3659|chr17:10193422-10193946:+|1.4314665862336369|0.0037291429207947|8.58|151.0|10|2|sense MLT1F_dup3659|chr17:10193422-10193946:+|1.4314665862336369|0.0037291429207947|8.58|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 587.7673950195312 2 587.308552 1172.60255 NaN NaN NaN NaN NaN NaN NaN 51.953 1 55.286 54.786 55.786 3.3332 0 0 0 0.40746 1 11552 11552 0.69038 0.088878 1 37636 16381 23849 23860 42813 42813 0.023154398876613413 RPWRRRPAL 9 Unmodified _RPWRRRPAL_ 0 0 0 REV__ADGRB2|p.A94Pfs*85|1|0.2|ENSG00000121753|chr1:31756557-31756557|C/-|frameshift_variant REV__ADGRB2|p.A94Pfs*85|1|0.2|ENSG00000121753|chr1:31756557-31756557|C/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 604.36767578125 2 604.36779 1206.72103 0.50948 0.00030791 -1.576 -0.00095247 -1.0665 -0.00064455 604.3665876972397 98.168 0.18285 101.59 101.48 101.66 3.4216 30 24 2 0 0 0 0.50088 1 24298 24298 0.52476 0.066424 1 70152 + 37637 16905 23850 23861 42814 42814 0.12593555187686434 RPWRRRPAL 9 Unmodified _RPWRRRPAL_ 0 0 0 REV__ADGRB2|p.A94Pfs*85|1|0.2|ENSG00000121753|chr1:31756557-31756557|C/-|frameshift_variant REV__ADGRB2|p.A94Pfs*85|1|0.2|ENSG00000121753|chr1:31756557-31756557|C/-|frameshift_variant MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 604.36779 1206.72103 0.50948 0.00030791 -1.576 -0.00095247 -1.0665 -0.00064455 604.3665876972397 98.168 0.18285 101.59 101.48 101.66 3.4216 0.02323 0.00014706 NaN 0.52476 30 24 2 NaN NaN NaN NaN 0 NaN NaN 0 70152 + 37638 16905 23850 23861 0.12593555187686434 RPWTAWSEC 9 Unmodified _RPWTAWSEC_ 0 0 0 ENSG00000262655|ENST00000576479|SPON1 ENSG00000262655|ENST00000576479|SPON1 ENSG00000262655|ENST00000576479|SPON1 MSMS UPN48_class_I_Rep_1 5 568.252197265625 2 568.253108 1134.49166 NaN NaN NaN NaN NaN NaN NaN 21.19 1 24.736 24.236 25.236 3.5454 0 0 0 0.3967 1 1900 1900 1.4819 0.28856 1 37639 5789 23851 23862 42815 42815 -0.07020244611089765 RPWWHRHQ 8 Unmodified _RPWWHRHQ_ 0 0 0 L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|313|2|anti-sense;L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|208|3|anti-sense L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|313|2|anti-sense L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|313|2|anti-sense MSMS UPN48_class_I_Rep_2 6 601.8102416992188 2 601.807565 1201.60058 NaN NaN NaN NaN NaN NaN NaN 59.338 1 62.825 62.325 63.325 3.4868 0 0 0 0.40746 1 13007 13007 0.69038 0 1 37640 14778 23852 23863 42816 42816 0.007841471940537303 RPWWRRHPRES 11 Unmodified _RPWWRRHPRES_ 0 0 0 L1P3_dup491|chr3:23416245-23418494:-|1.1271063041970524|0.0965420225691833|3.55|151.0|116|3|anti-sense L1P3_dup491|chr3:23416245-23418494:-|1.1271063041970524|0.0965420225691833|3.55|151.0|116|3|anti-sense L1P3_dup491|chr3:23416245-23418494:-|1.1271063041970524|0.0965420225691833|3.55|151.0|116|3|anti-sense MSMS UPN46_class_I_Rep_3 1 521.8165893554688 3 521.611508 1561.8127 NaN NaN NaN NaN NaN NaN NaN 68.97 1 68.97 68.47 69.47 0 0 0 0 0.38417 1 15777 15777 0.094841 0 1 37641 13545 23853 23864 42817 42817 0.05426193814196267 RPYVQRRAQRR 11 Unmodified _RPYVQRRAQRR_ 0 0 0 REV__LTR79_dup3833|chr22:40120651-40121132:-|1.7784501260233048|0.0266535267533226|6.06|151.0|14|3|sense REV__LTR79_dup3833|chr22:40120651-40121132:-|1.7784501260233048|0.0266535267533226|6.06|151.0|14|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.2936706542969 3 495.958908 1484.85489 0.27928 0.00013851 -0.14522 -7.2025E-05 0.13406 6.6488E-05 495.9588943455404 96.126 0.30913 99.891 99.779 100.09 3.7648 79 45 3 0 0 0 0.68132 1 23841 23841 0.40827 0 1 184200 + 37642 31015 23854 23865 42818 42818 0.13186169222581157 RPYVQRRAQRR 11 Unmodified _RPYVQRRAQRR_ 0 0 0 REV__LTR79_dup3833|chr22:40120651-40121132:-|1.7784501260233048|0.0266535267533226|6.06|151.0|14|3|sense REV__LTR79_dup3833|chr22:40120651-40121132:-|1.7784501260233048|0.0266535267533226|6.06|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 495.9588317871094 3 495.958908 1484.85489 0.17401 8.6302E-05 0.46684 0.00023154 0.64085 0.00031784 495.9588768561042 95.982 1.034 99.594 99.146 100.18 3.6124 298 136 4 0 0 0 0.68132 1 23180 23180 0.40827 0.31342 1 756540 + 37643 31015 23854 23865 42819 42819 0.13186169222581157 RPYVQRRAQRR 11 Unmodified _RPYVQRRAQRR_ 0 0 0 REV__LTR79_dup3833|chr22:40120651-40121132:-|1.7784501260233048|0.0266535267533226|6.06|151.0|14|3|sense REV__LTR79_dup3833|chr22:40120651-40121132:-|1.7784501260233048|0.0266535267533226|6.06|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 495.9590759277344 3 495.958908 1484.85489 0.25143 0.0001247 0.041089 2.0378E-05 0.29252 0.00014508 495.9588629956492 95.665 1.3251 99.574 98.86 100.19 3.9084 275 182 2 0 0 0 0.68081 2 22746 22704;22746 0.45452 0.45452 1 477490 + 37644 31015 23854 23865 42820;42821 42821 0.13186169222581157 RPYWNKEAV 9 Unmodified _RPYWNKEAV_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MSMS UPN46_class_I_Rep_3 1 581.8035278320312 2 581.803823 1161.59309 NaN NaN NaN NaN NaN NaN NaN 45.855 1 45.855 45.355 46.355 0 0 0 0 0.37891 1 9357 9357 5.7319 0 1 + 37645 21367 23855 23866 42822 42822 0.01875950083126554 RQAGLSYIR 9 Unmodified _RQAGLSYIR_ 0 0 0 nc|ENSG00000180389|Q5VTU8|ATP5F1EP2;ENSG00000124172|ENST00000243997|ATP5F1E nc|ENSG00000180389|Q5VTU8|ATP5F1EP2 nc|ENSG00000180389|Q5VTU8|ATP5F1EP2 MULTI-MSMS UPN46_class_I_Rep_3 1 532.3038330078125 2 532.30399 1062.59343 0.15471 8.2354E-05 0.34932 0.00018594 0.50403 0.0002683 532.3041226948106 33.486 0.72813 33.486 33.178 33.906 0 110 56 3 0 0 0 0.12795 3 5896 5860;5896;5934 28.495 4.4739 1 268440 37646 2448 23856 23867 42823;42824;42825 42824 0.06463369802986563 RQAIGLMGY 9 Oxidation (M) _RQAIGLM(Oxidation (M))GY_ RQAIGLM(1)GY RQAIGLM(48)GY 0 0 1 ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF ENSG00000115271|ENST00000437150|GCA ENSG00000115271|ENST00000437150|GCA MSMS UPN46_class_I_Rep_3 1 512.765625 2 512.765852 1023.51715 NaN NaN NaN NaN NaN NaN NaN 45.233 1 45.233 44.733 45.733 0 0 0 0 0.027434 1 9178 9178 48.346 28.907 1 37647 2119 23857 23868 42826 42826 73 0.006332299113523732 RQAKQESTEY 10 Unmodified _RQAKQESTEY_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN46_class_I_Rep_3 1 620.3015747070312 2 620.301841 1238.58913 0.052682 3.2679E-05 0.46763 0.00029007 0.52031 0.00032275 620.8039281280705 13.799 0.46098 13.799 13.639 14.1 0 84 52 2 0 0 0 0.55448 1 466 466 4.897 3.8255 1 66194 37648 824 23858 23869 42827 42827 -0.02062184201213313 RQAKRFSKV 9 Unmodified _RQAKRFSKV_ 0 0 0 L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|2|1|sense L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|2|1|sense L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 560.3410034179688 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 90.995 1 94.396 93.896 94.896 3.401 0 0 0 0.4007 1 22781 22781 0.52476 0 1 37649 12113 23859 23870 42828 42828 0.11267337965318802 RQALFNLY 8 Unmodified _RQALFNLY_ 0 0 0 REV__ENSG00000108590|ENST00000225728|MED31 REV__ENSG00000108590|ENST00000225728|MED31 MSMS UPN46_class_I_Rep_3 1 512.7657470703125 2 512.782359 1023.55016 NaN NaN NaN NaN NaN NaN NaN 44.992 1 44.992 44.492 45.492 0 0 0 0 0.38547 1 9107 9107 13.508 1.8676 1 + 37650 18387 23860 23871 42829 42829 0.039331800256945826 RQAPLCDV 8 Unmodified _RQAPLCDV_ 0 0 0 L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|249|2|anti-sense;L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|175|1|anti-sense L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|249|2|anti-sense L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|249|2|anti-sense MSMS UPN47_class_I_Rep_2 3 451.23126220703125 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 99.625 1 103.12 102.62 103.62 3.4974 0 0 0 0.40604 1 24376 24376 2.5775 1.0956 1 37651 14520 23861 23872 42830 42830 -0.005470146685183863 RQAQDLLTWE 10 Unmodified _RQAQDLLTWE_ 0 0 0 REV__ENSG00000196605|ENST00000397902|ZNF846 REV__ENSG00000196605|ENST00000397902|ZNF846 MULTI-MSMS UPN47_class_I_Rep_3 4 630.3235473632812 2 630.322576 1258.6306 0.46289 0.00029177 0.27304 0.0001721 0.73593 0.00046387 630.3228125946649 49.441 0.14428 52.676 52.629 52.774 3.2345 10 7 2 0 0 0 0.56155 1 10852 10852 2.7352 0.45242 1 49466 + 37652 21048 23862 23873 42831 42831 0.011629965580596036 RQDPRRVGRK 10 Unmodified _RQDPRRVGRK_ 0 0 0 REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.378173828125 2 634.376343 1266.73813 0.5668 0.00035957 1.2995 0.00082438 1.8663 0.0011839 634.377591779316 106.19 0.22083 109.9 109.82 110.05 3.7088 52 30 2 0 0 0 0.56078 4 26039 26027;26039;26041;26057 3.2813 0.54611 1 379790 + 37653 22865 23863 23874 42832;42833;42834;42835 42833 0.11543431002814941 RQDPRRVGRK 10 Unmodified _RQDPRRVGRK_ 0 0 0 REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 634.8782958984375 2 634.376343 1266.73813 0.5668 0.00035957 1.2995 0.00082438 1.8663 0.0011839 634.377591779316 106.19 0.22083 109.9 109.82 110.05 3.7088 52 30 2 0 0 0 0.84575 1 26041 26041 1.3295 0.13619 1 379790 + 37654 22865 23863 23874 42836 42836 0.11543431002814941 RQDPRRVGRK 10 Unmodified _RQDPRRVGRK_ 0 0 0 REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.3778076171875 2 634.376343 1266.73813 NaN NaN NaN NaN NaN NaN NaN 105.19 1 108.72 108.22 109.22 3.5308 0 0 0 0.53105 1 25764 25764 3.2813 0.28607 1 + 37655 22865 23863 23874 42837 42837 0.11543431002814941 RQDPRRVGRK 10 Unmodified _RQDPRRVGRK_ 0 0 0 REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 634.8777465820312 2 634.376343 1266.73813 0.49751 0.00031561 -0.059999 -3.8062E-05 0.43751 0.00027754 634.3766028224044 104.21 0.48955 107.91 107.54 108.03 3.6991 164 73 4 0 0 0 0.54466 4 24609 24590;24609;24646;24679 6.2058 0.47393 1 128200000 + 37656 22865 23863 23874 42838;42839;42840;42841 42839 0.11543431002814941 RQDPRRVGRK 10 Unmodified _RQDPRRVGRK_ 0 0 0 REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 634.8777465820312 2 634.376343 1266.73813 0.49751 0.00031561 -0.059999 -3.8062E-05 0.43751 0.00027754 634.3766028224044 104.21 0.48955 107.91 107.54 108.03 3.6991 164 73 4 0 0 0 0.84575 1 24609 24609 6.2058 0.47393 1 128200000 + 37657 22865 23863 23874 42842 42842 0.11543431002814941 RQDWFLWWKMR 11 Unmodified _RQDWFLWWKMR_ 0 0 0 REV__ENST00000557925.1_1_19:8315741-8320784:+|nuORF REV__ENST00000557925.1_1_19:8315741-8320784:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 551.2825317382812 3 551.282 1650.82417 0.36556 0.00020153 0.53748 0.0002963 0.90305 0.00049783 551.2822402406399 46.803 0.44497 46.803 46.616 47.061 0 60 41 2 0 0 0 0.68478 1 9573 9573 0.094841 0.011491 1 256420 + 37658 23000 23864 23875 42843 42843 0.02479254793297514 RQEGLILL 8 Unmodified _RQEGLILL_ 0 0 0 L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|247|1|anti-sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|247|1|anti-sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|247|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.2922058105469 2 471.292559 940.570566 NaN NaN NaN NaN NaN NaN NaN 63.377 1 66.632 66.132 67.132 3.2558 0 0 0 0.40738 1 15031 15031 0.79363 0 1 37659 14802 23865 23876 42844 42844 0.09790350685523208 RQEGLTQTY 9 Unmodified _RQEGLTQTY_ 0 0 0 ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A MULTI-MSMS UPN46_class_I_Rep_3 1 548.2750854492188 2 548.275095 1094.53564 0.18121 9.9355E-05 -0.19833 -0.00010874 -0.017114 -9.3833E-06 548.7764942535898 32.239 0.26207 32.239 32.096 32.359 0 27 20 2 0 0 0 0.40701 1 5491 5491 7.609 0.88579 1 69491 37660 4053 23866 23877 42845 42845 -0.00784936913078127 RQEITIIR 8 Unmodified _RQEITIIR_ 0 0 0 L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|23|1|sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|23|1|sense L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|23|1|sense MSMS UPN46_class_I_Rep_3 1 514.8134765625 2 514.81419 1027.61383 NaN NaN NaN NaN NaN NaN NaN 36.554 1 36.554 36.054 37.054 0 0 0 0 0.40501 1 6787 6787 3.9444 0 1 37661 13784 23867 23878 42846 42846 0.1011254046279646 RQEPQQWLP 9 Unmodified _RQEPQQWLP_ 0 0 0 MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|16|2|sense MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|16|2|sense MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|16|2|sense MSMS UPN47_class_I_Rep_3 4 591.3057250976562 2 591.306729 1180.59891 NaN NaN NaN NaN NaN NaN NaN 60.256 1 63.421 62.921 63.921 3.1651 0 0 0 0.38784 1 14137 14137 3.5965 1.019 1 37662 16110 23868 23879 42847 42847 0.015830485948072237 RQERACAGEL 10 Unmodified _RQERACAGEL_ 0 0 0 THE1B_dup7358|chr5:70504984-70505340:+|1.763666202528511|0.018749612913425|6.56|141.0|16|1|anti-sense;THE1B_dup7352|chr5:69905941-69906297:-|2.749805118474153|0.0197158766145947|7.12|151.0|16|1|anti-sense;THE1B_dup6915|chr5:21486865-21487221:-|3.074499190894296|0.0489272420956698|5.97|151.0|16|1|anti-sense;THE1B_dup7095|chr5:34186953-34187310:+|4.038466601479948|0.0550416792236105|6.2|151.0|20|2|anti-sense THE1B_dup7358|chr5:70504984-70505340:+|1.763666202528511|0.018749612913425|6.56|141.0|16|1|anti-sense THE1B_dup7358|chr5:70504984-70505340:+|1.763666202528511|0.018749612913425|6.56|141.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 566.7193603515625 2 566.780022 1131.54549 NaN NaN NaN NaN NaN NaN NaN 79.238 1 82.593 82.093 83.093 3.3554 0 0 0 0.53105 1 19715 19715 2.9952 0 1 37663 32886 23869 23880 42848 42848 -0.015020721793689518 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN47_class_I_Rep_1 2 485.28594970703125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 40.769 1 44.44 43.94 44.94 3.6719 0 0 0 0.40738 1 8119 8119 0.79363 0 1 37664 1816 23870 23881 42849 42849 0.07004903608196855 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.28533935546875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 43.193 1 46.551 46.051 47.051 3.358 0 0 0 0.40738 1 8885 8885 0.79363 0 1 37665 1816 23870 23881 42850 42850 0.07004903608196855 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN48_class_I_Rep_1 5 485.28515625 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 43.221 1 46.732 46.232 47.232 3.5103 0 0 0 0.40738 1 8088 8088 0.79363 0 1 37666 1816 23870 23881 42851 42851 0.07004903608196855 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN48_class_I_Rep_1 5 485.2852783203125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 55.609 1 59.118 58.618 59.618 3.5082 0 0 0 0.40738 1 11886 11886 0.79363 0 1 37667 1816 23870 23881 42852 42852 0.07004903608196855 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.28125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 58.568 1 62.067 61.567 62.567 3.4987 0 0 0 0.40738 1 12768 12768 0.79363 0 1 37668 1816 23870 23881 42853 42853 0.07004903608196855 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN48_class_I_Rep_3 7 485.285400390625 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 57.988 1 61.52 61.02 62.02 3.5317 0 0 0 0.40738 1 12525 12525 0.79363 0 1 37669 1816 23870 23881 42854 42854 0.07004903608196855 RQFHGLLV 8 Unmodified _RQFHGLLV_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN48_class_I_Rep_3 7 485.28564453125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 58.174 1 61.706 61.206 62.206 3.5317 0 0 0 0.40738 1 12583 12583 0.79363 0 1 37670 1816 23870 23881 42855 42855 0.07004903608196855 RQFHGVVLA 9 Unmodified _RQFHGVVLA_ 0 0 0 REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|3|1|sense REV__HERVP71A-int_dup41|chr3:5147444-5149403:-|4.570561945397366|0.1123243145960755|5.35|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 513.73779296875 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 66.39 1 66.39 65.89 66.89 0 0 0 0 0.39326 1 15061 15061 2.3027 0 1 + 37671 23938 23871 23882 42856 42856 0.06528288636923207 RQFKRRGP 8 Unmodified _RQFKRRGP_ 0 0 0 REV__AluSx_dup98098|chr17:43254776-43254965:-|1.4554738547349766|0.0033091732642648|8.78|128.0|3|2|sense REV__AluSx_dup98098|chr17:43254776-43254965:-|1.4554738547349766|0.0033091732642648|8.78|128.0|3|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 522.811767578125 2 522.812316 1043.61008 0.32941 0.00017222 -1.2758 -0.00066699 -0.94636 -0.00049477 522.8115264842279 90.923 0.29321 90.923 90.892 91.185 0 35 25 2 0 0 0 0.82752 1 21981 21981 2.3027 2.3027 1 340890 + 37672 17162 23872 23883 42857 42857 0.0900191547959821 RQFKRRGP 8 Unmodified _RQFKRRGP_ 0 0 0 REV__AluSx_dup98098|chr17:43254776-43254965:-|1.4554738547349766|0.0033091732642648|8.78|128.0|3|2|sense REV__AluSx_dup98098|chr17:43254776-43254965:-|1.4554738547349766|0.0033091732642648|8.78|128.0|3|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 522.812316 1043.61008 0.37566 0.0001964 -1.7214 -0.00089998 -1.3458 -0.00070358 522.8114159314557 87.635 0.19394 91.022 90.925 91.118 3.3873 0.04932 -0.0002917 NaN 2.3027 28 22 2 NaN NaN NaN NaN 0 NaN NaN 0 71205 + 37673 17162 23872 23883 0.0900191547959821 RQFLLYNV 8 Unmodified _RQFLLYNV_ 0 0 0 nc|ENSG00000076706|P43121-2|MCAM nc|ENSG00000076706|P43121-2|MCAM nc|ENSG00000076706|P43121-2|MCAM MSMS UPN47_class_I_Rep_2 3 526.7973022460938 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 24.864 1 28.347 27.847 28.847 3.483 0 0 0 0.40746 1 3365 3365 0.69038 0 1 37674 16638 23873 23884 42858 42858 0.05773753059793307 RQFLLYNV 8 Unmodified _RQFLLYNV_ 0 0 0 nc|ENSG00000076706|P43121-2|MCAM nc|ENSG00000076706|P43121-2|MCAM nc|ENSG00000076706|P43121-2|MCAM MSMS UPN47_class_I_Rep_2 3 526.7973022460938 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 26.389 1 29.884 29.384 30.384 3.4945 0 0 0 0.40746 1 3810 3810 0.69038 0 1 37675 16638 23873 23884 42859 42859 0.05773753059793307 RQFRLSGS 8 Unmodified _RQFRLSGS_ 0 0 0 REV__L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|79|3|anti-sense REV__L1PA10_dup6238|chr16:68112786-68114395:-|2.716794535826468|0.02287790513289|6.89|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_3 4 475.7784423828125 2 475.761958 949.509363 NaN NaN NaN NaN NaN NaN NaN 39.344 1 42.582 42.082 43.082 3.238 0 0 0 0.40625 1 7762 7762 2.3027 0 1 + 37676 28981 23874 23885 42860 42860 0.03258838706108236 RQFRRYKW 8 Unmodified _RQFRRYKW_ 0 0 0 REV__ENSG00000204019|ENST00000371894|CT83 REV__ENSG00000204019|ENST00000371894|CT83 MSMS UPN46_class_I_Rep_3 1 620.7590942382812 2 620.346523 1238.67849 NaN NaN NaN NaN NaN NaN NaN 72.149 1 72.149 71.649 72.649 0 0 0 0 0.40746 1 16661 16661 0.69038 0.088878 1 + 37677 21177 23875 23886 42861 42861 0.06870160059452246 RQFWLGLY 8 Unmodified _RQFWLGLY_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MSMS UPN47_class_I_Rep_3 4 542.2728271484375 2 541.792727 1081.5709 NaN NaN NaN NaN NaN NaN NaN 37.207 1 40.454 39.954 40.954 3.247 0 0 0 0.40581 1 7108 7108 2.8892 0 1 37678 4964 23876 23887 42862 42862 0.03337770405369156 RQGATRVL 8 Unmodified _RQGATRVL_ 0 0 0 REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|18|1|sense REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 450.7792053222656 2 450.772326 899.530098 NaN NaN NaN NaN NaN NaN NaN 48.112 1 51.461 50.961 51.961 3.3492 0 0 0 0.37681 1 10373 10373 15.847 0 1 + 37679 23722 23877 23888 42863 42863 0.07631429085756736 RQGDQVYAF 9 Unmodified _RQGDQVYAF_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS UPN47_class_I_Rep_1 2 542.2644653320312 2 542.26453 1082.51451 0.0040614 2.2024E-06 -0.084695 -4.5927E-05 -0.080634 -4.3725E-05 542.2644170035309 39.861 1.1499 43.528 43.175 44.325 3.6668 191 84 3 0 0 0 0.1249 3 7843 7843;7882;7921 29.082 1.4528 1 534420 37680 874 23878 23889 42864;42865;42866 42864 -0.023449022219665494 RQGDQVYAF 9 Unmodified _RQGDQVYAF_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS UPN47_class_I_Rep_2 3 542.2642211914062 2 542.26453 1082.51451 0.0063536 3.4453E-06 -0.043145 -2.3396E-05 -0.036792 -1.9951E-05 542.2644446433346 40.239 0.92028 43.61 43.268 44.188 3.3712 171 63 4 0 0 0 0.1249 4 7927 7927;7966;8003;8046 29.082 4.0906 1 533180 37681 874 23878 23889 42867;42868;42869;42870 42867 -0.023449022219665494 RQGDQVYAF 9 Unmodified _RQGDQVYAF_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS UPN47_class_I_Rep_3 4 542.2645263671875 2 542.26453 1082.51451 -0.035657 -1.9336E-05 -0.051878 -2.8131E-05 -0.087535 -4.7467E-05 542.2644356143046 40.323 1.1747 43.561 43.244 44.419 3.2372 177 77 3 0 0 0 0.090251 3 8077 8077;8123;8165 36.127 4.8587 1 444340 37682 874 23878 23889 42871;42872;42873 42871 -0.023449022219665494 RQGDQVYAF 9 Unmodified _RQGDQVYAF_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MATCH UPN48_class_I_Rep_3 7 2 542.26453 1082.51451 0.43243 0.00023449 -1.1381 -0.00061712 -0.70562 -0.00038263 542.2642442342758 40.201 0.049728 43.852 43.822 43.872 3.6509 0.21431 -0.0011697 NaN 36.127 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 37996 37683 874 23878 23889 -0.023449022219665494 RQGILALQL 9 Unmodified _RQGILALQL_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2;SZT2|p.I1657Hfs*16|1|0.14|ENSG00000198198|chr1:43431760-43431761|-/G|frameshift_variant;SZT2|p.Q1764Pfs*10|1|0.09|ENSG00000198198|chr1:43432530-43432531|-/C|frameshift_variant nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-MSMS UPN48_class_I_Rep_2 6 506.3194274902344 2 506.319109 1010.62366 0.36588 0.00018525 -0.31076 -0.00015735 0.055115 2.7906E-05 506.31889455567534 61.483 0.68593 64.956 64.658 65.344 3.4738 90 56 2 0 0 0 0.090251 1 13710 13710 36.127 0 1 333940 37684 5418 23879 23890 42874 42874 0.11877728468175519 RQGKKHKH 8 Unmodified _RQGKKHKH_ 0 0 0 HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 509.8049011230469 2 509.804491 1017.59443 0.30042 0.00015316 -1.8363 -0.00093617 -1.5359 -0.00078302 509.80364693185663 79.707 0.20431 79.707 79.586 79.791 0 20 17 2 0 0 0 0.82752 1 18761 18761 0.69038 0 1 78147 37685 8277 23880 23891 42875 42875 0.08633628962547846 RQGKKHKH 8 Unmodified _RQGKKHKH_ 0 0 0 HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.803955078125 2 509.804491 1017.59443 0.31931 0.00016279 -1.3454 -0.00068591 -1.0261 -0.00052313 509.8036612222606 78.046 0.15343 81.667 81.63 81.783 3.6216 22 16 2 0 0 0 0.82752 1 18489 18489 0.69038 0.69038 1 114150 37686 8277 23880 23891 42876 42876 0.08633628962547846 RQGKKHKH 8 Unmodified _RQGKKHKH_ 0 0 0 HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 509.803466796875 2 509.804491 1017.59443 0.31818 0.00016221 -1.3643 -0.0006955 -1.0461 -0.00053329 509.803683520998 78.461 0.21158 82.083 81.961 82.173 3.6215 39 25 2 0 0 0 0.72333 1 18590 18590 0.69038 0 1 97962 37687 8277 23880 23891 42877 42877 0.08633628962547846 RQGKKHKH 8 Unmodified _RQGKKHKH_ 0 0 0 HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 509.804491 1017.59443 0.24387 0.00012433 -1.5521 -0.00079125 -1.3082 -0.00066693 509.80345513668556 76.061 0.10422 79.464 79.404 79.508 3.4034 -0.11874 -0.00011564 NaN 0.69038 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 34802 37688 8277 23880 23891 0.08633628962547846 RQGKKHKH 8 Unmodified _RQGKKHKH_ 0 0 0 HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense HERVK14-int_dup353|chr19:57896193-57898664:+|1.739643419489496|0.1307154913840267|3.73|151.0|57|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 509.804491 1017.59443 0.31123 0.00015867 -1.2124 -0.00061806 -0.90112 -0.0004594 509.8038218450773 75.976 0.064438 79.577 79.526 79.591 3.6011 -0.0057167 0.00023074 NaN 0.69038 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 71899 37689 8277 23880 23891 0.08633628962547846 RQGPICPVEE 10 Unmodified _RQGPICPVEE_ 0 0 0 REV__L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|4|1|sense REV__L1M2a_dup251|chr10:1002497-1005131:-|1.4298512350164445|0.1327507049934253|3.43|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 564.2791137695312 2 564.279323 1126.54409 NaN NaN NaN NaN NaN NaN NaN 23.742 1 27.382 26.882 27.882 3.6397 0 0 0 0.53105 1 2641 2641 1.4819 0.15237 1 + 37690 24260 23881 23892 42878 42878 -0.01411706268117996 RQGQNNRIKQ 10 Unmodified _RQGQNNRIKQ_ 0 0 0 REV__L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|87|2|sense REV__L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|87|2|sense MSMS UPN48_class_I_Rep_2 6 621.3472290039062 2 621.344709 1240.67486 NaN NaN NaN NaN NaN NaN NaN 40.15 1 43.891 43.391 44.391 3.7413 0 0 0 0.53105 1 7200 7200 1.4819 0 1 + 37691 29986 23882 23893 42879 42879 0.06415445494917549 RQGQWLRRRR 10 Unmodified _RQGQWLRRRR_ 0 0 0 ENST00000469485.5_1_X:18911605-18915466:-|nuORF;ENST00000473739.5_1_X:18912213-18919671:-|nuORF;ENSG00000044446|ENST00000379942|PHKA2 ENST00000469485.5_1_X:18911605-18915466:-|nuORF ENST00000469485.5_1_X:18911605-18915466:-|nuORF MSMS UPN46_class_I_Rep_3 1 471.27972412109375 3 471.279982 1410.81812 NaN NaN NaN NaN NaN NaN NaN 91.584 1 91.584 91.084 92.084 0 0 0 0 0.53105 1 22127 22127 0.15932 0 1 37692 880 23883 23894 42880 42880 0.12913917396667784 RQGVDVAR 8 Unmodified _RQGVDVAR_ 0 0 0 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 MULTI-MSMS UPN48_class_I_Rep_1 5 450.7541198730469 2 450.754133 899.493713 0.0068439 3.0849E-06 -0.3161 -0.00014248 -0.30926 -0.0001394 450.7538744763393 102.05 0.5972 105.66 105.36 105.96 3.612 133 83 2 0 0 0 0.82752 1 24661 24661 2.5775 0 1 219440 37693 3506 23884 23895 42881 42881 0.03994552189033129 RQHAAGVL 8 Unmodified _RQHAAGVL_ 0 0 0 REV__L1PA2_dup3449|chr10:30948037-30953410:+|1.1083981677439356|0.0934299521211378|3.57|151.0|78|2|sense REV__L1PA2_dup3449|chr10:30948037-30953410:+|1.1083981677439356|0.0934299521211378|3.57|151.0|78|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 426.24609375 2 426.245944 850.477334 0.098371 4.193E-05 0.082928 3.5348E-05 0.1813 7.7278E-05 426.2458427393832 79.004 0.52711 79.004 78.785 79.312 0 79 51 2 0 0 0 0.82752 1 18511 18511 2.3027 1.5091 1 143670 + 37694 29489 23885 23896 42882 42882 0.046114710229517186 RQHFTRRCM 9 Unmodified _RQHFTRRCM_ 0 0 0 REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|103|3|sense REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|103|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 617.8028564453125 2 617.805851 1233.59715 0.46063 0.00028458 -2.6043 -0.001609 -2.1437 -0.0013244 617.803176482902 75.115 0.032066 78.605 78.588 78.62 3.49 6 2 3 0 0 0 0.48643 1 17784 17784 2.0598 0.40713 1 148730 + 37695 27302 23886 23897 42883 42883 -0.010306069664466122 RQHRQFMD 8 Unmodified _RQHRQFMD_ 0 0 0 ENST00000374007.5_2_10:52499748-52504894:+|nuORF;ENST00000395526.8_1_10:51956672-51962602:-|nuORF;nc|ENSG00000204147|P0C7U1|ASAH2B ENST00000374007.5_2_10:52499748-52504894:+|nuORF ENST00000374007.5_2_10:52499748-52504894:+|nuORF MSMS UPN48_class_I_Rep_3 7 559.2710571289062 2 559.269624 1116.5247 NaN NaN NaN NaN NaN NaN NaN 70.991 1 74.509 74.009 75.009 3.5185 0 0 0 0.40746 1 16454 16454 0.69038 0 1 37696 6424 23887 23898 42884 42884 -0.028906177683438727 RQIEAQLMLM 10 Unmodified _RQIEAQLMLM_ 0 0 0 L1PB3_dup113|chr1:167292441-167294060:+|2.0042800825219707|0.1041442409131026|4.27|151.0|54|3|sense L1PB3_dup113|chr1:167292441-167294060:+|2.0042800825219707|0.1041442409131026|4.27|151.0|54|3|sense L1PB3_dup113|chr1:167292441-167294060:+|2.0042800825219707|0.1041442409131026|4.27|151.0|54|3|sense MSMS UPN48_class_I_Rep_1 5 616.8255004882812 2 616.828126 1231.6417 NaN NaN NaN NaN NaN NaN NaN 48.517 1 52.041 51.541 52.541 3.5239 0 0 0 0.53105 1 9706 9706 1.3295 0.13619 1 37697 15239 23888 23899 42885 42885 0.03514359336350026 RQIEELVA 8 Unmodified _RQIEELVA_ 0 0 0 REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|89|3|sense REV__L1MA2_dup5975|chr12:111904369-111907491:+|4.060632115701|0.236719564815002|4.1|151.0|89|3|sense MSMS UPN48_class_I_Rep_3 7 479.2704772949219 2 479.271824 956.529095 NaN NaN NaN NaN NaN NaN NaN 37.678 1 41.341 40.841 41.841 3.663 0 0 0 0.40738 1 6380 6380 0.79363 0 1 + 37698 24910 23889 23900 42886 42886 0.04909169926179402 RQIFKRGWRQR 11 Unmodified _RQIFKRGWRQR_ 0 0 0 REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|24|1|sense REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|24|1|sense MSMS UPN47_class_I_Rep_3 4 510.9685974121094 3 510.967404 1529.88038 NaN NaN NaN NaN NaN NaN NaN 97.721 1 101.14 100.64 101.64 3.4216 0 0 0 0.38417 1 24214 24214 1.3296 0.82369 1 + 37699 25115 23890 23901 42887 42887 0.13663643745007903 RQIFKRGWRQR 11 Unmodified _RQIFKRGWRQR_ 0 0 0 REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|24|1|sense REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|24|1|sense MSMS UPN48_class_I_Rep_3 7 510.63409423828125 3 510.967404 1529.88038 NaN NaN NaN NaN NaN NaN NaN 98.087 1 101.99 101.49 102.49 3.9022 0 0 0 0.38417 1 23242 23242 0.45452 0.35968 1 + 37700 25115 23890 23901 42888 42888 0.13663643745007903 RQIKFVDF 8 Unmodified _RQIKFVDF_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS UPN47_class_I_Rep_2 3 526.7967529296875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.142 1 23.538 23.038 24.038 3.3963 0 0 0 0.40604 1 2036 2036 2.5775 0 1 37701 4000 23891 23902 42889 42889 0.05773753059793307 RQIKFVDF 8 Unmodified _RQIKFVDF_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS UPN47_class_I_Rep_3 4 526.7975463867188 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.613 1 23.963 23.463 24.463 3.3496 0 0 0 0.40604 1 2159 2159 2.5775 0 1 37702 4000 23891 23902 42890 42890 0.05773753059793307 RQIKFVDF 8 Unmodified _RQIKFVDF_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS UPN48_class_I_Rep_1 5 526.7975463867188 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 18.023 1 21.554 21.054 22.054 3.5313 0 0 0 0.40746 1 1145 1145 0.69038 0 1 37703 4000 23891 23902 42891 42891 0.05773753059793307 RQIKFVDF 8 Unmodified _RQIKFVDF_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS UPN48_class_I_Rep_2 6 526.7964477539062 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 18.214 1 21.865 21.365 22.365 3.6509 0 0 0 0.40746 1 1183 1183 0.69038 0 1 37704 4000 23891 23902 42892 42892 0.05773753059793307 RQIKFVDF 8 Unmodified _RQIKFVDF_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS UPN48_class_I_Rep_2 6 526.7972412109375 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 19.954 1 23.604 23.104 24.104 3.6497 0 0 0 0.40604 1 1622 1622 2.5775 0 1 37705 4000 23891 23902 42893 42893 0.05773753059793307 RQIKPYIYI 9 Unmodified _RQIKPYIYI_ 0 0 0 REV__HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|37|3|sense REV__HAL1b_dup5241|chr21:29448477-29449602:-|1.001121318446743|0.0097487242265447|6.68|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 597.8250732421875 2 597.355691 1192.69683 NaN NaN NaN NaN NaN NaN NaN 89.233 1 92.906 92.406 93.406 3.6738 0 0 0 0.40038 1 22309 22309 0.6015 0 1 + 37706 23459 23892 23903 42894 42894 0.10818857190793096 RQIPSAYEHV 10 Unmodified _RQIPSAYEHV_ 0 0 0 THE1B-int_dup984|chr4:9044963-9046563:+|1.2244798103645618|0.144535504542713|3.08|151.0|49|1|anti-sense;THE1B-int_dup2196|chr8:12554653-12556244:-|4.766665412239219|0.4019341790686274|3.57|151.0|50|1|anti-sense;THE1B-int_dup2094|chr7:97891380-97892971:-|1.125512539975586|0.0424074938488867|4.73|149.0|53|1|anti-sense THE1B-int_dup984|chr4:9044963-9046563:+|1.2244798103645618|0.144535504542713|3.08|151.0|49|1|anti-sense THE1B-int_dup984|chr4:9044963-9046563:+|1.2244798103645618|0.144535504542713|3.08|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_2 3 600.3132934570312 2 600.312012 1198.60947 NaN NaN NaN NaN NaN NaN NaN 71.79 1 75.08 74.58 75.58 3.2899 0 0 0 0.53105 1 17567 17567 2.9952 0.93549 1 37707 32903 23893 23904 42895 42895 0.01811031249235384 RQIRKKHRRRE 11 Unmodified _RQIRKKHRRRE_ 0 0 0 REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 521.9913330078125 3 521.657341 1561.95019 0.25249 0.00013171 -0.70807 -0.00036937 -0.45558 -0.00023766 521.9912111335279 60.39 0.20172 60.39 60.337 60.539 0 34 25 3 0 0 0 0.68491 1 13394 13394 0.08335 0 1 777740 + 37708 22438 23894 23905 42896 42896 0.1916952241360832 RQIRKKHRRRE 11 Unmodified _RQIRKKHRRRE_ 0 0 0 REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 521.6573486328125 3 521.657341 1561.95019 0.25249 0.00013171 -0.70807 -0.00036937 -0.45558 -0.00023766 521.9912111335279 60.39 0.20172 60.39 60.337 60.539 0 34 25 3 0 0 0 22.551 1 13429 13429 0.08335 0 1 777740 + 37709 22438 23894 23905 42897 42897 0.1916952241360832 RQIRKKHRRRE 11 Unmodified _RQIRKKHRRRE_ 0 0 0 REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 521.6573486328125 3 521.657341 1561.95019 0.2529 0.00013192 -0.66271 -0.00034571 -0.40981 -0.00021378 521.991411660438 60.562 0.23956 60.562 60.439 60.678 0 40 29 2 0 0 0 22.551 1 13429 13429 0.08335 0 1 954940 + 37710 22438 23894 23905 42898 42898 0.1916952241360832 RQIRKKHRRRE 11 Unmodified _RQIRKKHRRRE_ 0 0 0 REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 521.657341 1561.95019 0.37221 0.00019417 -0.86789 -0.00045274 -0.49568 -0.00025857 521.6567510261006 56.978 0.50267 60.472 60.399 60.902 3.4942 0.031641 -0.00016923 NaN 0.08335 58 43 2 NaN NaN NaN NaN 0 NaN NaN 0 460630 + 37711 22438 23894 23905 0.1916952241360832 RQIRKKHRRRE 11 Unmodified _RQIRKKHRRRE_ 0 0 0 REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 521.657341 1561.95019 0.31704 0.00016539 -0.57584 -0.00030039 -0.2588 -0.000135 521.9914631596382 56.917 0.12502 60.459 60.435 60.56 3.5427 0.018997 0.00028782 NaN 0.08335 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 334780 + 37712 22438 23894 23905 0.1916952241360832 RQIRKKHRRRE 11 Unmodified _RQIRKKHRRRE_ 0 0 0 REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF REV__ENST00000461933.1_1_3:169684610-169686205:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 521.657341 1561.95019 0.31998 0.00016692 -0.31568 -0.00016468 0.0043004 2.2433E-06 521.9915466794358 57.101 0.13177 60.644 60.532 60.664 3.5427 0.041081 0.00039984 NaN 0.08335 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 171380 + 37713 22438 23894 23905 0.1916952241360832 RQISVYKNK 9 Unmodified _RQISVYKNK_ 0 0 0 REV__L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|2|1|sense REV__L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 568.0838623046875 2 568.332747 1134.65094 NaN NaN NaN NaN NaN NaN NaN 42.112 1 45.754 45.254 46.254 3.6415 0 0 0 0.38784 1 7681 7681 3.5965 0.60125 1 + 37714 27637 23895 23906 42899 42899 0.08900212008552444 RQITIFLAA 9 Unmodified _RQITIFLAA_ 0 0 0 REV__L1MB5_dup6038|chr11:72949482-72950628:-|2.3816597906163794|0.1052413691720346|4.5|151.0|11|1|sense REV__L1MB5_dup6038|chr11:72949482-72950628:-|2.3816597906163794|0.1052413691720346|4.5|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 516.8162841796875 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 93.169 1 96.939 96.439 97.439 3.77 0 0 0 0.37692 1 22159 22159 6.2058 2.2614 1 + 37715 26085 23896 23907 42900 42900 0.09822326093899392 RQKAVSLF 8 Unmodified _RQKAVSLF_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS UPN46_class_I_Rep_3 1 474.7845764160156 2 474.784902 947.55525 0.22492 0.00010679 -0.31083 -0.00014758 -0.085909 -4.0788E-05 474.7846768449574 40.916 1.0477 40.916 40.017 41.065 0 234 117 3 0 0 0 0.82752 5 7871 7847;7871;7885;7937;7977 46.021 11.919 1 1537700 37716 2547 23897 23908 42901;42902;42903;42904;42905 42902 0.07937483888326824 RQKELESNY 9 Unmodified _RQKELESNY_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9 nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN46_class_I_Rep_3 1 583.7940673828125 2 583.793652 1165.57275 0.11508 6.7182E-05 -0.070828 -4.1349E-05 0.04425 2.5833E-05 583.7935883905401 23.276 0.96188 23.276 22.879 23.84 0 139 94 2 0 0 0 0.30034 4 2966 2851;2885;2966;2993 13.906 5.9959 1 99708 37717 2915 23898 23909 42906;42907;42908;42909 42908 -0.0034126536731946544 RQKEMYTK 8 Unmodified _RQKEMYTK_ 0 0 0 L1ME4a_dup350|chr1:29174230-29174624:+|3.044519130614098|0.3650252757781613|3.06|151.0|5|2|sense L1ME4a_dup350|chr1:29174230-29174624:+|3.044519130614098|0.3650252757781613|3.06|151.0|5|2|sense L1ME4a_dup350|chr1:29174230-29174624:+|3.044519130614098|0.3650252757781613|3.06|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 542.2827758789062 2 542.284408 1082.55426 NaN NaN NaN NaN NaN NaN NaN 29.295 1 32.618 32.118 33.118 3.3235 0 0 0 0.40625 1 4715 4715 2.3027 0 1 37718 12873 23899 23910 42910 42910 0.016289014570929794 RQKERRWA 8 Unmodified _RQKERRWA_ 0 0 0 ENST00000360409.7_1_2:206662273-206662375:+|nuORF ENST00000360409.7_1_2:206662273-206662375:+|nuORF ENST00000360409.7_1_2:206662273-206662375:+|nuORF MSMS UPN47_class_I_Rep_2 3 565.3197631835938 2 565.320506 1128.62646 NaN NaN NaN NaN NaN NaN NaN 80.131 1 83.501 83.001 84.001 3.3694 0 0 0 0.40738 1 19961 19961 0.79363 0 1 37719 6318 23900 23911 42911 42911 0.0672899664571105 RQKHNLKAK 9 Unmodified _RQKHNLKAK_ 0 0 0 REV__ENST00000511141.1_1_4:153717696-153717858:-|nuORF REV__ENST00000511141.1_1_4:153717696-153717858:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 561.8463134765625 2 561.846356 1121.67816 0.44408 0.0002495 -0.98739 -0.00055476 -0.54331 -0.00030526 561.8457331846372 87.706 0.32281 91.516 91.396 91.719 3.8104 51 39 2 0 0 0 0.50088 1 20800 20800 0.52476 0 1 128970 + 37720 22737 23901 23912 42912 42912 0.12218740339585565 RQKKALIGI 9 Unmodified _RQKKALIGI_ 0 0 0 REV__L1MC5_dup1792|chr2:165937869-165939213:+|1.1432893667292674|0.080262917632423|3.83|151.0|42|3|sense REV__L1MC5_dup1792|chr2:165937869-165939213:+|1.1432893667292674|0.080262917632423|3.83|151.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.8427124023438 2 513.842751 1025.67095 -0.23632 -0.00012143 0.41336 0.0002124 0.17704 9.0969E-05 513.8429130056071 17.908 0.93137 21.459 20.937 21.869 3.5504 154 112 2 0 0 0 0.48846 1 1437 1437 1.8442 0 1 51047 + 37721 27071 23902 23913 42913 42913 0.15914007739161207 RQKKEIGSY 9 Unmodified _RQKKEIGSY_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|73|3|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|73|3|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|73|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 554.8084716796875 2 554.809105 1107.60366 -0.18789 -0.00010424 -0.97975 -0.00054357 -1.1676 -0.00064781 554.8091430208826 13.196 0.37417 13.196 12.98 13.354 0 70 39 3 0 0 0 0.47493 1 344 344 3.2813 0.28607 1 64746 37722 10190 23903 23914 42914 42914 0.0541593273756007 RQKKKKKKEKL 11 Unmodified _RQKKKKKKEKL_ 0 0 0 L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|68|2|sense L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|68|2|sense L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 481.33709716796875 3 481.327827 1440.96165 NaN NaN NaN NaN NaN NaN NaN 81.326 1 84.983 84.483 85.483 3.6567 0 0 0 0.38417 1 19302 19302 0.50596 0.41111 1 37723 15103 23904 23915 42915 42915 0.25880906664383474 RQKNGTAEK 9 Unmodified _RQKNGTAEK_ 0 0 0 L1MC2_dup4497|chr12:45872712-45873574:-|2.2317672511873146|0.0180810961805439|6.95|151.0|16|2|sense L1MC2_dup4497|chr12:45872712-45873574:-|2.2317672511873146|0.0180810961805439|6.95|151.0|16|2|sense L1MC2_dup4497|chr12:45872712-45873574:-|2.2317672511873146|0.0180810961805439|6.95|151.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 516.2822875976562 2 516.283254 1030.55196 NaN NaN NaN NaN NaN NaN NaN 58.511 1 62.034 61.534 62.534 3.5231 0 0 0 0.39598 1 12686 12686 1.6526 0 1 37724 11258 23905 23916 42916 42916 0.03790189043661485 RQKPPADLRP 10 Unmodified _RQKPPADLRP_ 0 0 0 nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A nc|ENSG00000198604|Q9NRL2-2|BAZ1A MSMS UPN47_class_I_Rep_3 4 589.3421020507812 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 84.773 1 88.135 87.635 88.635 3.3615 0 0 0 0.53105 1 21277 21277 3.2813 0 1 37725 5442 23906 23917 42917 42917 0.09147016757128767 RQKPQPRIVK 10 Unmodified _RQKPQPRIVK_ 0 0 0 REV__nc|ENSG00000185046|Q7Z6G8-6|ANKS1B REV__nc|ENSG00000185046|Q7Z6G8-6|ANKS1B MULTI-SECPEP UPN47_class_I_Rep_1 2 625.9339599609375 2 625.396213 1248.77787 0.55466 0.00034688 -1.1867 -0.00074214 -0.63201 -0.00039526 625.3954108869347 108.17 0.10507 111.81 111.78 111.89 3.6355 13 11 2 0 0 0 0.84575 1 26556 26556 6.7232 3.7279 1 686080 + 37726 20842 23907 23918 42918 42918 0.16343557953541676 RQKQIQKLR 9 Unmodified _RQKQIQKLR_ 0 0 0 L1MEf_dup7635|chr10:96038057-96039637:-|1.206020938935542|0.0560913474792882|4.43|151.0|18|1|sense L1MEf_dup7635|chr10:96038057-96039637:-|1.206020938935542|0.0560913474792882|4.43|151.0|18|1|sense L1MEf_dup7635|chr10:96038057-96039637:-|1.206020938935542|0.0560913474792882|4.43|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 599.3810424804688 2 599.380563 1196.74657 NaN NaN NaN NaN NaN NaN NaN 95.339 1 98.749 98.249 99.249 3.4095 0 0 0 0.4007 1 23703 23703 0.52476 0 1 37727 13320 23908 23919 42919 42919 0.15606984919440947 RQKQKLIL 8 Unmodified _RQKQKLIL_ 0 0 0 REV__ENSG00000143207.21,COP1,chr1,-,I20.1,175987104,175988287|23|8.13|2|intron REV__ENSG00000143207.21,COP1,chr1,-,I20.1,175987104,175988287|23|8.13|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 513.8427124023438 2 513.842751 1025.67095 -0.23632 -0.00012143 0.41336 0.0002124 0.17704 9.0969E-05 513.8429130056071 17.908 0.93137 21.459 20.937 21.869 3.5504 154 112 2 0 0 0 0.82752 2 1322 1322;1382 0.69038 0 1 51047 + 37728 19432 23909 23920 42920;42921 42920 0.15914007739183944 RQKQKLIL 8 Unmodified _RQKQKLIL_ 0 0 0 REV__ENSG00000143207.21,COP1,chr1,-,I20.1,175987104,175988287|23|8.13|2|intron REV__ENSG00000143207.21,COP1,chr1,-,I20.1,175987104,175988287|23|8.13|2|intron MSMS UPN47_class_I_Rep_1 2 513.8426513671875 2 513.842751 1025.67095 NaN NaN NaN NaN NaN NaN NaN 18.419 1 21.999 21.499 22.499 3.5806 0 0 0 0.40746 1 1538 1538 0.69038 0 1 + 37729 19432 23909 23920 42922 42922 0.15914007739183944 RQKQYRWMEWN 11 Unmodified _RQKQYRWMEWN_ 0 0 0 nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5 nc|ENSG00000012779|P09917-5|ALOX5 nc|ENSG00000012779|P09917-5|ALOX5 MSMS UPN47_class_I_Rep_1 2 542.2655029296875 3 542.264898 1623.77286 NaN NaN NaN NaN NaN NaN NaN 21.58 1 25.255 24.755 25.755 3.6749 0 0 0 0.38417 1 2363 2363 0.094841 0 1 37730 782 23910 23921 42923 42923 -0.014071139713905723 RQKRDPAFT 9 Unmodified _RQKRDPAFT_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MSMS UPN48_class_I_Rep_1 5 559.8076782226562 2 559.806897 1117.59924 NaN NaN NaN NaN NaN NaN NaN 57.322 1 60.816 60.316 61.316 3.4942 0 0 0 0.28335 1 12411 12411 11.64 3.7301 1 37731 2338 23911 23922 42924 42924 0.045144683146418174 RQKRLQRWP 9 Unmodified _RQKRLQRWP_ 0 0 0 REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.8782958984375 2 634.378355 1266.74216 0.56681 0.00035957 -1.913 -0.0012135 -1.3461 -0.00085396 634.3775507863935 106.43 0.087112 110.14 110.12 110.21 3.7088 17 12 2 0 0 0 0.48846 1 26097 26097 1.8442 0.36234 1 144330 + 37732 21910 23912 23923 42925 42925 0.11945520496556128 RQKRLQRWP 9 Unmodified _RQKRLQRWP_ 0 0 0 REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 634.378355 1266.74216 0.56681 0.00035957 -1.913 -0.0012135 -1.3461 -0.00085396 634.3775507863935 106.43 0.087112 110.14 110.12 110.21 3.7088 -0.095291 -0.00026108 NaN 1.8442 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 144330 + 37733 21910 23912 23923 0.11945520496556128 RQKRLQRWP 9 Unmodified _RQKRLQRWP_ 0 0 0 REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 634.378355 1266.74216 0.63453 0.00040253 -1.5707 -0.00099645 -0.93622 -0.00059392 634.3777418233636 106.8 0.078239 110.33 110.3 110.37 3.5345 0.095291 0.00017309 NaN 1.8442 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 212150 + 37734 21910 23912 23923 0.11945520496556128 RQKRRQKRG 9 Unmodified _RQKRRQKRG_ 0 0 0 MLT1D_dup14720|chr12:104672907-104673315:-|2.0349211878573223|0.0032691145532533|9.28|151.0|9|2|sense MLT1D_dup14720|chr12:104672907-104673315:-|2.0349211878573223|0.0032691145532533|9.28|151.0|9|2|sense MLT1D_dup14720|chr12:104672907-104673315:-|2.0349211878573223|0.0032691145532533|9.28|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 404.7928771972656 3 404.921794 1211.74355 NaN NaN NaN NaN NaN NaN NaN 41.722 1 44.959 44.459 45.459 3.2372 0 0 0 0.40191 1 8489 8489 0.23584 0 1 37735 16337 23913 23924 42926 42926 0.14615154585294476 RQKRRRGLQ 9 Unmodified _RQKRRRGLQ_ 0 0 0 REV__L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|33|1|sense REV__L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|33|1|sense MSMS UPN48_class_I_Rep_3 7 599.3739624023438 2 599.373604 1196.73265 NaN NaN NaN NaN NaN NaN NaN 86.013 1 89.783 89.283 90.283 3.7701 0 0 0 0.4007 1 20415 20415 0.52476 0 1 + 37736 29562 23914 23925 42927 42927 0.14215752211021027 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.9810791015625 3 483.646776 1447.9185 0.21826 0.00010556 -0.22154 -0.00010715 -0.0032721 -1.5826E-06 483.64654816731763 50.869 0.19522 50.869 50.718 50.913 0 33 19 3 0 0 0 0.56523 1 10761 10761 0.13989 0 1 2866700 + 37737 18352 23915 23926 42928 42928 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.6467590332031 3 483.646776 1447.9185 0.21733 0.00010511 -0.29923 -0.00014472 -0.081906 -3.9614E-05 483.64652692511794 51.068 0.29274 51.068 50.913 51.206 0 76 30 3 0 0 0 0.56523 1 10797 10797 0.13989 0 1 2485000 + 37738 18352 23915 23926 42929 42929 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.64654541015625 3 483.646776 1447.9185 0.21565 0.0001043 -0.37936 -0.00018348 -0.16371 -7.9176E-05 483.64648174636824 51.357 0.31833 51.357 51.206 51.524 0 91 35 3 0 0 0 0.56523 2 10873 10873;10911 0.13989 0 1 1270700 + 37739 18352 23915 23926 42930;42931 42930 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.6465148925781 3 483.646776 1447.9185 0.21456 0.00010377 -0.3814 -0.00018446 -0.16683 -8.0688E-05 483.6464975402896 51.57 0.25923 51.57 51.503 51.763 0 74 28 4 0 0 0 0.56523 1 10993 10993 0.13989 0 1 1162100 + 37740 18352 23915 23926 42932 42932 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.64666748046875 3 483.646776 1447.9185 0.21221 0.00010263 -0.26039 -0.00012594 -0.048185 -2.3304E-05 483.64655613689735 52.047 0.14989 52.047 51.979 52.129 0 35 15 3 0 0 0 0.56523 1 11115 11115 0.13989 0 1 685720 + 37741 18352 23915 23926 42933 42933 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.64703369140625 3 483.646776 1447.9185 0.20973 0.00010143 -0.20653 -9.9886E-05 0.0032018 1.5485E-06 483.6465321527372 52.543 0.34957 52.543 52.289 52.639 0 80 42 3 0 0 0 0.56523 1 11241 11241 0.13989 0 1 1232900 + 37742 18352 23915 23926 42934 42934 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.98089599609375 3 483.646776 1447.9185 0.20836 0.00010077 -0.36349 -0.0001758 -0.15513 -7.5027E-05 483.9808924588234 52.87 0.32323 52.87 52.639 52.962 0 84 34 3 0 0 0 0.56523 2 11277 11277;11316 0.13989 0 1 1462200 + 37743 18352 23915 23926 42935;42936 42935 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.646728515625 3 483.646776 1447.9185 0.20722 0.00010022 -0.50153 -0.00024256 -0.29431 -0.00014234 483.6464335876052 53.083 0.17771 53.083 52.921 53.098 0 42 17 3 0 0 0 0.56523 2 11350 11350;11387 0.13989 0 1 1650200 + 37744 18352 23915 23926 42937;42938 42937 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.98089599609375 3 483.646776 1447.9185 0.20657 9.9908E-05 -0.32742 -0.00015835 -0.12085 -5.8447E-05 483.646503327347 53.146 0.20599 53.146 53.098 53.304 0 36 20 3 0 0 0 0.56523 2 11406 11406;11425 0.13989 0 1 2464200 + 37745 18352 23915 23926 42939;42940 42939 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN46_class_I_Rep_3 1 483.6465148925781 3 483.646776 1447.9185 0.20517 9.9231E-05 -0.39765 -0.00019232 -0.19247 -9.309E-05 483.6465188080148 53.405 0.22892 53.405 53.336 53.565 0 55 24 3 0 0 0 0.56523 1 11494 11494 0.13989 0 1 1603100 + 37746 18352 23915 23926 42941 42941 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_1 2 483.6461486816406 3 483.646776 1447.9185 -0.14632 -7.0768E-05 -0.50466 -0.00024408 -0.65099 -0.00031485 483.64656918181953 45.2 0.48441 48.9 48.708 49.192 3.6999 49 28 2 0 0 0 0.56523 2 9441 9441;9491 0.13989 0 1 119410 + 37747 18352 23915 23926 42942;42943 42942 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_1 2 483.6465148925781 3 483.646776 1447.9185 -0.1158 -5.6007E-05 -0.37085 -0.00017936 -0.48665 -0.00023537 483.6465705089619 46.597 1.1917 50.297 49.306 50.497 3.6999 149 76 3 0 0 0 0.56523 1 9655 9655 0.13989 0 1 430440 + 37748 18352 23915 23926 42944 42944 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MSMS UPN47_class_I_Rep_1 2 483.64703369140625 3 483.646776 1447.9185 NaN NaN NaN NaN NaN NaN NaN 44.955 1 48.655 48.155 49.155 3.6999 0 0 0 0.53105 1 9396 9396 0.13989 0 1 + 37749 18352 23915 23926 42945 42945 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MSMS UPN47_class_I_Rep_1 2 483.64666748046875 3 483.646776 1447.9185 NaN NaN NaN NaN NaN NaN NaN 78.103 1 81.532 81.032 82.032 3.4289 0 0 0 0.53105 1 19406 19406 0.13989 0 1 + 37750 18352 23915 23926 42946 42946 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP UPN47_class_I_Rep_1 2 483.7661437988281 3 483.646776 1447.9185 0.0060655 2.9335E-06 -0.43469 -0.00021024 -0.42862 -0.0002073 483.64652086928896 50.7 0.69894 54.329 53.889 54.588 3.6285 65 30 3 0 0 0 0.84575 1 11088 11088 0.13989 0 1 216720 + 37751 18352 23915 23926 42947 42947 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_2 3 483.9810791015625 3 483.646776 1447.9185 0.048656 2.3532E-05 -0.5664 -0.00027394 -0.51775 -0.00025041 483.98077401374144 46.621 0.42167 49.972 49.71 50.132 3.3515 68 30 3 0 0 0 0.56523 1 9885 9885 0.13989 0 1 112580 + 37752 18352 23915 23926 42948 42948 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_2 3 483.9810791015625 3 483.646776 1447.9185 0.19863 9.6069E-05 -0.53858 -0.00026048 -0.33995 -0.00016441 483.98084305555943 49.883 0.33137 53.226 53.041 53.372 3.3431 30 19 2 0 0 0 0.56523 1 10923 10923 0.13989 0 1 148840 + 37753 18352 23915 23926 42949 42949 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP UPN47_class_I_Rep_2 3 483.7424621582031 3 483.646776 1447.9185 0.063594 3.0757E-05 -0.49901 -0.00024135 -0.43542 -0.00021059 483.98077209461775 46.828 0.52806 50.18 50.031 50.559 3.3515 81 39 3 0 0 0 0.84575 1 9977 9977 0.13989 0 1 307380 + 37754 18352 23915 23926 42950 42950 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP UPN47_class_I_Rep_2 3 483.7428894042969 3 483.646776 1447.9185 0.084911 4.1067E-05 -0.083662 -4.0463E-05 0.0012482 6.0369E-07 483.6466120338019 47.453 0.32063 50.803 50.557 50.878 3.3492 45 18 3 0 0 0 0.84575 1 10193 10193 0.13989 0 1 94821 + 37755 18352 23915 23926 42951 42951 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_3 4 483.9811706542969 3 483.646776 1447.9185 0.052556 2.5418E-05 0.11461 5.5433E-05 0.16717 8.0851E-05 483.9812013644671 47.917 0.10064 51.158 51.134 51.235 3.2405 11 9 2 0 0 0 0.56523 1 10383 10383 0.13989 0 1 123860 + 37756 18352 23915 23926 42952 42952 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN47_class_I_Rep_3 4 483.6467590332031 3 483.646776 1447.9185 0.068863 3.3306E-05 -0.3858 -0.00018659 -0.31694 -0.00015329 483.9808878399189 48.321 0.43667 51.562 51.248 51.684 3.2405 34 25 2 0 0 0 0.56523 1 10477 10477 0.13989 0.04505 1 259780 + 37757 18352 23915 23926 42953 42953 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-SECPEP UPN47_class_I_Rep_3 4 484.3004150390625 3 483.646776 1447.9185 0.10987 5.3139E-05 -0.66899 -0.00032355 -0.55912 -0.00027041 483.9806958475635 55.254 0.30455 58.432 58.292 58.597 3.1779 22 19 2 0 0 0 0.84575 1 12610 12610 0.13989 0 1 109510 + 37758 18352 23915 23926 42954 42954 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_1 5 483.6466064453125 3 483.646776 1447.9185 0.12091 5.8479E-05 -0.16205 -7.8375E-05 -0.041138 -1.9896E-05 483.9810257486809 47.524 1.9144 51.046 50.484 52.399 3.5219 403 137 3 0 0 0 0.56523 9 9251 9251;9291;9330;9369;9444;9485;9568;9650;9689 0.13989 0 1 2739200 + 37759 18352 23915 23926 42955;42956;42957;42958;42959;42960;42961;42962;42963 42955 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_1 5 483.64666748046875 3 483.646776 1447.9185 0.12811 6.1961E-05 -0.47885 -0.00023159 -0.35073 -0.00016963 483.6465685053494 107.7 0.067062 111.33 111.29 111.36 3.6313 12 9 2 0 0 0 0.56454 1 25973 25973 0.62683 0.17231 1 6137600 + 37760 18352 23915 23926 42964 42964 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_2 6 483.6465759277344 3 483.646776 1447.9185 0.14776 7.1466E-05 -0.15981 -7.729E-05 -0.012043 -5.8244E-06 483.6466108019162 47.533 2.6294 51.269 50.372 53.001 3.7361 550 198 3 0 0 0 0.56523 12 9138 9138;9179;9218;9252;9288;9321;9355;9392;9432;9474;9558;9597 0.13989 0 1 3399500 + 37761 18352 23915 23926 42965;42966;42967;42968;42969;42970;42971;42972;42973;42974;42975;42976 42965 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MSMS UPN48_class_I_Rep_2 6 483.646728515625 3 483.646776 1447.9185 NaN NaN NaN NaN NaN NaN NaN 50.109 1 53.803 53.303 54.303 3.6946 0 0 0 0.53105 1 10196 10196 0.13989 0 1 + 37762 18352 23915 23926 42977 42977 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_3 7 483.6465759277344 3 483.646776 1447.9185 0.15073 7.2902E-05 -0.11784 -5.6991E-05 0.032898 1.5911E-05 483.64666124115803 47.317 1.2451 50.953 50.274 51.519 3.6363 251 94 4 0 0 0 0.56296 8 9413 9134;9176;9217;9261;9297;9333;9373;9413 1.7423 1.6024 1 7334800 + 37763 18352 23915 23926 42978;42979;42980;42981;42982;42983;42984;42985 42985 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS UPN48_class_I_Rep_3 7 483.9813537597656 3 483.646776 1447.9185 0.12153 5.8779E-05 -0.67108 -0.00032457 -0.54955 -0.00026579 483.6463483189054 50.147 0.37735 53.768 53.543 53.92 3.621 37 23 2 0 0 0 0.56523 1 10135 10135 0.13989 0 1 165060 + 37764 18352 23915 23926 42986 42986 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 483.646776 1447.9185 0.21456 0.00010377 -0.3814 -0.00018446 -0.16683 -8.0688E-05 483.6464975402896 51.57 0.25923 51.57 51.503 51.763 0 -0.016222 -7.7874E-05 NaN 0.13989 74 28 4 NaN NaN NaN NaN 0 NaN NaN 0 1162100 + 37765 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_1 2 3 483.646776 1447.9185 -0.020446 -9.8888E-06 -0.52087 -0.00025192 -0.54131 -0.0002618 483.6465446376745 49.722 0.13488 53.382 53.297 53.432 3.6592 -0.074629 -0.00015112 NaN 0.13989 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 58108 + 37766 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 483.646776 1447.9185 0.14521 7.0229E-05 -0.73893 -0.00035738 -0.59373 -0.00028715 483.6464031771734 48.749 0.77562 52.096 51.615 52.39 3.3465 0.00087539 -0.00020089 NaN 0.13989 65 42 2 NaN NaN NaN NaN 0 NaN NaN 0 113650 + 37767 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 483.646776 1447.9185 0.12147 5.8747E-05 -0.33262 -0.00016087 -0.21115 -0.00010212 483.6466224742275 48.288 0.31289 51.638 51.411 51.723 3.3492 0.051064 -7.0996E-06 NaN 0.13989 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 78074 + 37768 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_2 3 3 483.646776 1447.9185 0.17044 8.2431E-05 -0.66683 -0.00032251 -0.49639 -0.00024008 483.6465239039404 49.26 0.39362 52.606 52.39 52.784 3.3465 0.072905 -0.00053062 NaN 0.13989 37 26 2 NaN NaN NaN NaN 0 NaN NaN 0 80320 + 37769 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646776 1447.9185 0.10637 5.1445E-05 -0.63645 -0.00030781 -0.53008 -0.00025637 483.64642976045985 48.908 0.75846 52.142 51.706 52.465 3.2345 0.047159 -5.2184E-05 NaN 0.13989 53 41 2 NaN NaN NaN NaN 0 NaN NaN 0 140870 + 37770 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646776 1447.9185 0.16971 8.2081E-05 -0.31099 -0.00015041 -0.14127 -6.8326E-05 483.6466493989846 50.152 0.22513 53.378 53.303 53.528 3.2262 -0.077818 0.0001534 NaN 0.13989 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 123860 + 37771 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646776 1447.9185 -0.036198 -1.7507E-05 -0.44273 -0.00021412 -0.47892 -0.00023163 483.6464739446757 46.358 0.55384 49.602 49.176 49.73 3.2439 -0.11588 -5.7879E-05 NaN 0.13989 46 34 2 NaN NaN NaN NaN 0 NaN NaN 0 122330 + 37772 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646776 1447.9185 0.048682 2.3545E-05 0.055432 2.681E-05 0.10411 5.0355E-05 483.6466216707813 47.86 0.076797 51.101 51.047 51.123 3.2405 0.16945 0.00026126 NaN 1.7423 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 227350 + 37773 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 483.646776 1447.9185 0.12923 6.2501E-05 -0.38663 -0.00018699 -0.2574 -0.00012449 483.6465100954696 46.025 1.2094 49.541 48.717 49.927 3.5162 -0.17666 2.3518E-05 NaN 0.13989 346 84 5 NaN NaN NaN NaN 0 NaN NaN 0 4889200 + 37774 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN48_class_I_Rep_1 5 3 483.646776 1447.9185 0.12337 5.9667E-05 -0.23038 -0.00011142 -0.10701 -5.1753E-05 483.6465622005125 48.928 0.38063 52.451 52.362 52.743 3.5239 -0.082106 0.00010265 NaN 0.13989 65 31 3 NaN NaN NaN NaN 0 NaN NaN 0 1147500 + 37775 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH UPN48_class_I_Rep_2 6 3 483.646776 1447.9185 0.19149 9.2612E-05 -0.313 -0.00015138 -0.12152 -5.8771E-05 483.98098922185125 49.654 0.29345 53.348 53.146 53.439 3.6946 -0.10803 0.00015048 NaN 0.13989 34 18 3 NaN NaN NaN NaN 0 NaN NaN 0 165860 + 37776 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 483.646776 1447.9185 0.12153 5.8779E-05 -0.67108 -0.00032457 -0.54955 -0.00026579 483.6463483189054 50.147 0.37735 53.768 53.543 53.92 3.621 0.31213 -0.00036907 NaN 0.13989 37 23 2 NaN NaN NaN NaN 0 NaN NaN 0 165060 + 37777 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 483.646776 1447.9185 0.14941 7.2263E-05 -0.41212 -0.00019932 -0.26271 -0.00012706 483.64648514222364 46.119 1.354 49.756 49.095 50.449 3.6369 0.038279 -1.3473E-05 NaN 0.13989 334 90 5 NaN NaN NaN NaN 0 NaN NaN 0 2697500 + 37778 18352 23915 23926 0.21245574450313143 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 483.646776 1447.9185 0.14186 6.8611E-05 -0.32037 -0.00015494 -0.17851 -8.6334E-05 483.64652491163594 47.943 1.7216 51.577 51.404 53.126 3.6339 -0.010086 1.0675E-05 NaN 0.13989 363 122 4 NaN NaN NaN NaN 0 NaN NaN 0 2797200 + 37779 18352 23915 23926 0.21245574450313143 RQKSLRLE 8 Unmodified _RQKSLRLE_ 0 0 0 nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB nc|ENSG00000164675|Q8NA54-2|IQUB nc|ENSG00000164675|Q8NA54-2|IQUB MSMS UPN48_class_I_Rep_2 6 515.3099975585938 2 515.311815 1028.60908 NaN NaN NaN NaN NaN NaN NaN 90.986 1 94.742 94.242 95.242 3.7554 0 0 0 0.40643 1 21663 21663 2.0598 0 1 37780 4125 23916 23927 42987 42987 0.09591656320026232 RQKTLETI 8 Unmodified _RQKTLETI_ 0 0 0 REV__L1M4_dup14602|chr12:38727489-38728727:+|1.1349441041042072|0.1833904508830964|2.63|127.0|22|2|sense REV__L1M4_dup14602|chr12:38727489-38728727:+|1.1349441041042072|0.1833904508830964|2.63|127.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.79315185546875 2 494.792924 987.571294 -0.34909 -0.00017273 0.56354 0.00027884 0.21445 0.00010611 494.7933603936727 13.767 0.2285 17.224 17.145 17.373 3.457 41 27 2 0 0 0 0.82752 1 412 412 2.3027 0 1 63307 + 37781 24370 23917 23928 42988 42988 0.07701145334590365 RQKTQVIA 8 Unmodified _RQKTQVIA_ 0 0 0 L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|32|3|sense L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|32|3|sense L1MB4_dup4704|chrX:41105337-41106307:-|1.3261554726325273|0.0129929340928789|6.67|151.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 472.2880859375 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.97 1 91.357 90.857 91.857 3.3873 0 0 0 0.40604 1 22057 22057 2.5775 0 1 37782 10526 23918 23929 42989 42989 0.0874858239999412 RQKVALTQ 8 Unmodified _RQKVALTQ_ 0 0 0 ENST00000572240.5_1_16:3078109-3079857:-|nuORF;nc|ENSG00000162069|A1A5D9-2|BICDL2;ENSG00000162069|ENST00000572449|BICDL2 ENST00000572240.5_1_16:3078109-3079857:-|nuORF ENST00000572240.5_1_16:3078109-3079857:-|nuORF MSMS UPN46_class_I_Rep_3 1 472.2878723144531 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 92.706 1 92.706 92.206 93.206 0 0 0 0 0.40746 1 22446 22446 0.69038 0 1 37783 3917 23919 23930 42990 42990 0.08748582399982752 RQKVALTQ 8 Unmodified _RQKVALTQ_ 0 0 0 ENST00000572240.5_1_16:3078109-3079857:-|nuORF;nc|ENSG00000162069|A1A5D9-2|BICDL2;ENSG00000162069|ENST00000572449|BICDL2 ENST00000572240.5_1_16:3078109-3079857:-|nuORF ENST00000572240.5_1_16:3078109-3079857:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 472.28814697265625 2 472.287808 942.561064 0.21111 9.9706E-05 -0.17302 -8.1714E-05 0.038095 1.7992E-05 472.28764798810084 86.491 0.98515 90.209 90.173 91.158 3.7171 202 137 2 0 0 0 0.82752 1 20709 20709 0.69038 0 1 1283400 37784 3917 23919 23930 42991 42991 0.08748582399982752 RQKVNKGI 8 Unmodified _RQKVNKGI_ 0 0 0 L1PA5_dup6046|chr9:5722563-5728670:-|3.799967550728709|0.3694972304435154|3.36|151.0|22|1|sense;L1PA4_dup6449|chr9:20795836-20801175:-|2.655475337766587|0.1137447692921219|4.55|151.0|7|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|140|3|sense L1PA5_dup6046|chr9:5722563-5728670:-|3.799967550728709|0.3694972304435154|3.36|151.0|22|1|sense L1PA5_dup6046|chr9:5722563-5728670:-|3.799967550728709|0.3694972304435154|3.36|151.0|22|1|sense MSMS UPN47_class_I_Rep_1 2 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 73.858 1 77.244 76.744 77.744 3.3861 0 0 0 0.40625 1 18153 18153 2.3027 0 1 37785 14379 23920 23931 42992 42992 0.10392288636899139 RQLAKCLI 8 Unmodified _RQLAKCLI_ 0 0 0 REV__ENSG00000069248|ENST00000261396|NUP133 REV__ENSG00000069248|ENST00000261396|NUP133 MSMS UPN48_class_I_Rep_3 7 472.7886047363281 2 472.78913 943.563706 NaN NaN NaN NaN NaN NaN NaN 88.073 1 91.884 91.384 92.384 3.8104 0 0 0 0.40604 1 20903 20903 2.5775 0 1 + 37786 17784 23921 23932 42993 42993 0.08966714533289633 RQLALRGG 8 Unmodified _RQLALRGG_ 0 0 0 REV__ENSG00000100564|ENST00000216452|PIGH REV__ENSG00000100564|ENST00000216452|PIGH MULTI-MSMS UPN48_class_I_Rep_2 6 435.7670593261719 2 435.767043 869.519533 0.099858 4.3515E-05 -0.034032 -1.483E-05 0.065826 2.8685E-05 435.76692608008307 78.73 1.0701 82.363 81.965 83.036 3.6331 231 127 2 0 0 0 0.82752 1 18635 18635 4.756 0 1 420760 + 37787 18120 23922 23933 42994 42994 0.07955446431333257 RQLGEVLVVA 10 Unmodified _RQLGEVLVVA_ 0 0 0 REV__ENSG00000103199.14,ZNF500,chr16,-,I4.1,4762757,4765564|67|5.33|1|intron REV__ENSG00000103199.14,ZNF500,chr16,-,I4.1,4762757,4765564|67|5.33|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 542.330810546875 2 542.329673 1082.64479 0.51845 0.00028117 0.072562 3.9352E-05 0.59101 0.00032052 542.3296945735282 58.183 0.54983 61.67 61.565 62.115 3.487 45 31 2 0 0 0 0.56281 1 12740 12740 1.8442 0 1 390830 + 37788 18221 23923 23934 42995 42995 0.106776937770519 RQLHKQRR 8 Unmodified _RQLHKQRR_ 0 0 0 REV__ENSG00000116497|ENST00000373475|S100PBP REV__ENSG00000116497|ENST00000373475|S100PBP MSMS UPN48_class_I_Rep_1 5 561.3414306640625 2 561.341772 1120.66899 NaN NaN NaN NaN NaN NaN NaN 100.94 1 104.55 104.05 105.05 3.6084 0 0 0 0.40746 1 24372 24372 0.69038 0 1 + 37789 18604 23924 23935 42996 42996 0.11348391773935873 RQLIKHYIHF 10 Unmodified _RQLIKHYIHF_ 0 0 0 REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 452.2626037597656 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.56433 1 12741 12741 0.77653 0 1 500210 + 37790 22393 23925 23936 42997 42997 0.10424155579244143 RQLIWYNARSK 11 Unmodified _RQLIWYNARSK_ 0 0 0 ENST00000563073.1_1_16:57258382-57272884:+|nuORF;ENST00000564530.5_1_16:57254621-57272884:+|nuORF;ENSG00000159579|ENST00000394420|RSPRY1 ENST00000563073.1_1_16:57258382-57272884:+|nuORF ENST00000563073.1_1_16:57258382-57272884:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.936767578125 3 478.936999 1433.78917 -0.16504 -7.9046E-05 -0.94663 -0.00045338 -1.1117 -0.00053242 478.9364711565302 44.883 0.45686 48.583 48.363 48.82 3.6999 36 30 2 0 0 0 0.6724 1 9358 9358 1.2148 0.76031 1 67624 37791 3843 23926 23937 42998 42998 0.08962335257001541 RQLLKSLK 8 Unmodified _RQLLKSLK_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|46|2|sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|46|2|sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|46|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.3296813964844 2 493.329476 984.6444 -0.54194 -0.00026735 0.044243 2.1826E-05 -0.49769 -0.00024553 493.3295006794752 21.858 0.74358 25.208 24.802 25.545 3.3496 131 70 2 0 0 0 0.82752 1 2586 2586 0.6015 0 1 75244 37792 13335 23927 23938 42999 42999 0.1514631884784876 RQLLPRLWP 9 Unmodified _RQLLPRLWP_ 0 0 0 REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|40|3|sense REV__THE1D-int_dup942|chr6:26834912-26836696:+|1.1623773473952743|0.1326923581806911|3.13|151.0|40|3|sense MSMS UPN48_class_I_Rep_1 5 589.8619995117188 2 589.861475 1177.7084 NaN NaN NaN NaN NaN NaN NaN 92.654 1 96.278 95.778 96.778 3.624 0 0 0 0.4007 1 22263 22263 0.52476 0 1 + 37793 32316 23928 23939 43000 43000 0.12665099004789226 RQLMQLDR 8 Unmodified _RQLMQLDR_ 0 0 0 REV__ENST00000531587.5_1_11:86126125-86133754:+|nuORF REV__ENST00000531587.5_1_11:86126125-86133754:+|nuORF MSMS UPN46_class_I_Rep_3 1 530.2905883789062 2 530.290025 1058.5655 NaN NaN NaN NaN NaN NaN NaN 117.23 1 117.23 116.73 117.73 0 0 0 0 0.40746 1 29053 29053 0.69038 0 1 + 37794 19609 23929 23940 43001 43001 0.038557235512371335 RQLMQLDR 8 Unmodified _RQLMQLDR_ 0 0 0 REV__ENST00000531587.5_1_11:86126125-86133754:+|nuORF REV__ENST00000531587.5_1_11:86126125-86133754:+|nuORF MSMS UPN46_class_I_Rep_3 1 530.2900390625 2 530.290025 1058.5655 NaN NaN NaN NaN NaN NaN NaN 117.5 1 117.5 117 118 0 0 0 0 0.40746 1 29125 29125 0.69038 0 1 + 37795 19609 23929 23940 43002 43002 0.038557235512371335 RQLPKIALLL 10 Unmodified _RQLPKIALLL_ 0 0 0 HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|43|2|sense;HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|25|1|sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|43|2|sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 582.893798828125 2 582.894983 1163.77541 NaN NaN NaN NaN NaN NaN NaN 78.561 1 78.561 78.061 79.061 0 0 0 0 0.53105 1 18405 18405 0.45834 0 1 37796 8418 23930 23941 43003 43003 0.20007709495894233 RQLPLKLK 8 Unmodified _RQLPLKLK_ 0 0 0 REV__L1MD3_dup4307|chr16:3833776-3834866:+|1.353987879755656|0.0249604921236068|5.76|151.0|14|2|sense REV__L1MD3_dup4307|chr16:3833776-3834866:+|1.353987879755656|0.0249604921236068|5.76|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 498.33990478515625 2 498.339844 994.665135 0.29152 0.00014527 0.23809 0.00011865 0.5296 0.00026392 498.3398405986416 108.28 0.53719 111.92 111.63 112.16 3.6355 173 50 4 0 0 0 0.82752 1 26576 26576 2.5775 0 1 12836000 + 37797 27483 23931 23942 43004 43004 0.16758909227507957 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 481.28387451171875 3 481.284398 1440.83137 0.26994 0.00012992 -1.9623 -0.0009444 -1.6923 -0.00081449 481.2833515062724 96.737 0.16959 96.737 96.679 96.849 0 22 14 2 0 0 0 0.68024 2 23517 23517;23552 0.50596 0.051438 1 1656100 + 37798 23853 23932 23943 43005;43006 43005 0.128583106654105 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 481.6177673339844 3 481.284398 1440.83137 0.26996 0.00012993 -2.107 -0.001014 -1.837 -0.00088412 481.28315292514037 96.878 0.035782 96.878 96.856 96.891 0 6 4 2 0 0 0 0.66974 1 23564 23564 1.4551 1.0006 1 69270 + 37799 23853 23932 23943 43007 43007 0.128583106654105 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 481.284398 1440.83137 0.15519 7.4689E-05 -2.306 -0.0011098 -2.1508 -0.0010351 481.28328614402693 93.347 0.13286 96.753 96.679 96.811 3.4052 -0.0071646 -0.00060438 NaN 0.50596 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 88236 + 37800 23853 23932 23943 0.128583106654105 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 481.284398 1440.83137 0.1194 5.7464E-05 -2.2638 -0.0010895 -2.1444 -0.0010321 481.2832442687238 93.266 0.13486 96.89 96.821 96.956 3.624 -0.030754 -0.00018177 NaN 1.4551 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 163470 + 37801 23853 23932 23943 0.128583106654105 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 481.284398 1440.83137 0.23748 0.00011429 -2.1448 -0.0010323 -1.9073 -0.00091797 481.2833582945108 93.072 0.11819 96.842 96.816 96.934 3.77 -0.078717 -9.9342E-06 NaN 1.4551 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 156510 + 37802 23853 23932 23943 0.128583106654105 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 481.284398 1440.83137 0.23756 0.00011434 -1.7795 -0.00085645 -1.542 -0.00074212 481.2834868529249 93.02 0.072144 96.79 96.738 96.81 3.77 0.030108 0.00015572 NaN 0.50596 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 152910 + 37803 23853 23932 23943 0.128583106654105 RQLQSKLLRNW 11 Unmodified _RQLQSKLLRNW_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|104|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 481.284398 1440.83137 0.22986 0.00011063 -2.0563 -0.00098968 -1.8265 -0.00087905 481.283355985521 93.181 0.18978 97.072 96.972 97.162 3.8914 0.15194 0.00011784 NaN 1.4551 50 25 3 NaN NaN NaN NaN 0 NaN NaN 0 119760 + 37804 23853 23932 23943 0.128583106654105 RQLRAWHEEE 10 Unmodified _RQLRAWHEEE_ 0 0 0 REV__nc|ENSG00000140527|Q6P2C0-2|WDR93 REV__nc|ENSG00000140527|Q6P2C0-2|WDR93 MULTI-SECPEP UPN46_class_I_Rep_3 1 452.26898193359375 3 451.893459 1352.65855 -0.15742 -7.1137E-05 1.8126 0.0008191 1.6552 0.00074796 451.8943102532167 26.09 0.3354 26.09 25.91 26.245 0 37 25 2 0 0 0 0.84575 1 3704 3704 0.62683 0.12087 1 56511 + 37805 19346 23933 23944 43008 43008 -0.0036768046181805403 RQLRSIPL 8 Unmodified _RQLRSIPL_ 0 0 0 REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|40|1|anti-sense REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_1 2 491.79583740234375 2 491.811451 981.608348 NaN NaN NaN NaN NaN NaN NaN 43.469 1 47.157 46.657 47.657 3.6875 0 0 0 0.40625 1 8942 8942 2.3027 0 1 + 37806 27567 23934 23945 43009 43009 0.11680861670993181 RQLSMPPA 8 Unmodified _RQLSMPPA_ 0 0 0 REV__L1PA13_dup8338|chr18:46022848-46023274:+|2.4800525548632244|0.168682215732841|3.88|151.0|24|1|anti-sense REV__L1PA13_dup8338|chr18:46022848-46023274:+|2.4800525548632244|0.168682215732841|3.88|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_3 7 450.2438049316406 2 450.242012 898.469472 NaN NaN NaN NaN NaN NaN NaN 81.427 1 85.112 84.612 85.612 3.685 0 0 0 0.40604 1 19275 19275 2.5775 0.27475 1 + 37807 28956 23935 23946 43010 43010 0.0161757571115686 RQLSYQLR 8 Unmodified _RQLSYQLR_ 0 0 0 REV__ENSG00000215186|ENST00000421285|GOLGA6B REV__ENSG00000215186|ENST00000421285|GOLGA6B MULTI-MSMS UPN46_class_I_Rep_3 1 532.3045043945312 2 532.30399 1062.59343 0.15471 8.2354E-05 0.34932 0.00018594 0.50403 0.0002683 532.3041226948106 33.486 0.72813 33.486 33.178 33.906 0 110 56 3 0 0 0 0.82752 1 5818 5818 18.146 1.9972 1 268440 + 37808 19865 23936 23947 43011 43011 0.06463369802986563 RQLYRRERRQL 11 Unmodified _RQLYRRERRQL_ 0 0 0 REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46 REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46 MULTI-MSMS UPN48_class_I_Rep_1 5 525.3095703125 3 525.309718 1572.90732 0.29323 0.00015404 -0.21915 -0.00011512 0.074078 3.8914E-05 525.3093530693249 96.174 0.15128 99.786 99.746 99.897 3.6124 26 18 2 0 0 0 0.68081 1 23168 23168 0.45452 0.046251 1 129560 + 37809 32072 23937 23948 43012 43012 0.14378707565538207 RQLYRRERRQL 11 Unmodified _RQLYRRERRQL_ 0 0 0 REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46 REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46 MULTI-MATCH UPN48_class_I_Rep_3 7 3 525.309718 1572.90732 0.44155 0.00023195 -1.093 -0.00057419 -0.6515 -0.00034224 525.6438173524066 95.7 0.021019 99.609 99.593 99.614 3.9084 -0.088724 -0.0013111 NaN 0.45452 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 50432 + 37810 32072 23937 23948 0.14378707565538207 RQMWGQRPHT 10 Unmodified _RQMWGQRPHT_ 0 0 0 THE1C-int_dup1668|chr16:15980732-15982256:-|3.1690255609364093|0.0298160016547855|6.73|151.0|37|3|sense THE1C-int_dup1668|chr16:15980732-15982256:-|3.1690255609364093|0.0298160016547855|6.73|151.0|37|3|sense THE1C-int_dup1668|chr16:15980732-15982256:-|3.1690255609364093|0.0298160016547855|6.73|151.0|37|3|sense MSMS UPN47_class_I_Rep_2 3 432.8851623535156 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 66.914 1 70.177 69.677 70.677 3.2636 0 0 0 0.53105 1 16106 16106 0.13989 0 1 37811 32938 23938 23949 43013 43013 -0.00543281922909955 RQNHRAPSF 9 Unmodified _RQNHRAPSF_ 0 0 0 REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF MSMS UPN47_class_I_Rep_1 2 556.7905883789062 2 556.789038 1111.56352 NaN NaN NaN NaN NaN NaN NaN 31.258 1 34.987 34.487 35.487 3.7293 0 0 0 0.39518 1 5220 5220 1.8442 0 1 + 37812 22663 23939 23950 43014 43014 0.01220430857665633 RQNHRAPSF 9 Unmodified _RQNHRAPSF_ 0 0 0 REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 556.7891235351562 2 556.789038 1111.56352 0.51734 0.00028805 1.6513 0.00091943 2.1686 0.0012075 556.789836268823 54.67 0.63079 57.989 57.68 58.311 3.3187 52 30 2 0 0 0 0.46869 1 12424 12424 3.9444 0.94915 1 104640 + 37813 22663 23939 23950 43015 43015 0.01220430857665633 RQNLFHRL 8 Unmodified _RQNLFHRL_ 0 0 0 REV__ENST00000470990.5_1_3:65595615-65607755:-|nuORF REV__ENST00000470990.5_1_3:65595615-65607755:-|nuORF MSMS UPN47_class_I_Rep_1 2 542.3145751953125 2 542.312149 1082.60975 NaN NaN NaN NaN NaN NaN NaN 64.632 1 67.988 67.488 68.488 3.3557 0 0 0 0.40604 1 15366 15366 2.5775 0 1 + 37814 19651 23940 23951 43016 43016 0.07174495759750243 RQNPILTVS 9 Unmodified _RQNPILTVS_ 0 0 0 REV__L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|67|3|sense REV__L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|67|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.299072265625 2 514.298373 1026.58219 0.33644 0.00017303 -0.16633 -8.5544E-05 0.17011 8.7487E-05 514.2981578640962 87.422 0.49267 91.059 90.844 91.337 3.6372 71 57 2 0 0 0 0.48846 1 21827 21827 1.8442 0.36234 1 85463 + 37815 24984 23941 23952 43017 43017 0.06996547708831713 RQNPLHIL 8 Unmodified _RQNPLHIL_ 0 0 0 REV__Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|81|3|sense REV__Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|81|3|sense MSMS UPN47_class_I_Rep_2 3 495.7805480957031 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.699 1 87.111 86.611 87.611 3.4116 0 0 0 0.40604 1 20871 20871 2.5775 0 1 + 37816 32641 23942 23953 43018 43018 0.08184288636891779 RQPAVAAR 8 Unmodified _RQPAVAAR_ 0 0 0 REV__ENSG00000126254|ENST00000262633|RBM42 REV__ENSG00000126254|ENST00000262633|RBM42 MULTI-MSMS UPN46_class_I_Rep_3 1 434.7591247558594 2 434.759218 867.503883 0.13425 5.8367E-05 -0.21978 -9.5551E-05 -0.085526 -3.7183E-05 434.75909048144774 81.765 0.98801 81.765 81.42 82.408 0 207 92 4 0 0 0 0.82752 1 19279 19279 4.756 0 1 1659500 + 37817 18860 23943 23954 43019 43019 0.06483159914273529 RQPAVAAR 8 Unmodified _RQPAVAAR_ 0 0 0 REV__ENSG00000126254|ENST00000262633|RBM42 REV__ENSG00000126254|ENST00000262633|RBM42 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 434.759218 867.503883 0.17668 7.6812E-05 -0.34527 -0.00015011 -0.16859 -7.3298E-05 434.7590221327649 78.302 0.74561 81.923 81.535 82.281 3.6215 0.026338 -6.3686E-05 NaN 4.756 191 89 3 NaN NaN NaN NaN 0 NaN NaN 0 612530 + 37818 18860 23943 23954 0.06483159914273529 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN46_class_I_Rep_3 1 479.2776794433594 2 479.277441 956.540328 0.23848 0.0001143 -0.51139 -0.0002451 -0.27291 -0.0001308 479.27721767526293 77.051 0.27489 77.051 76.878 77.153 0 34 27 2 0 0 0 0.82752 2 17956 17956;17989 2.3027 0 1 284570 + 37819 19081 23944 23955 43020;43021 43020 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN46_class_I_Rep_3 1 479.2771911621094 2 479.277441 956.540328 0.24145 0.00011572 -0.088556 -4.2443E-05 0.1529 7.3281E-05 479.27730551056476 77.856 0.5086 77.856 77.621 78.13 0 142 56 3 0 0 0 0.82752 1 18271 18271 4.3292 4.3292 1 589660 + 37820 19081 23944 23955 43022 43022 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN46_class_I_Rep_3 1 479.2772521972656 2 479.277441 956.540328 0.24321 0.00011657 -0.094801 -4.5436E-05 0.14841 7.1129E-05 479.27729385878115 78.546 0.99577 78.546 78.108 79.104 0 211 106 3 0 0 0 0.82752 2 18303 18303;18370 4.756 4.756 1 772180 + 37821 19081 23944 23955 43023;43024 43023 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN46_class_I_Rep_3 1 479.2775573730469 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 81.076 1 81.076 80.576 81.576 0 0 0 0 0.40625 1 19128 19128 2.3027 0 1 + 37822 19081 23944 23955 43025 43025 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2777099609375 2 479.277441 956.540328 0.11705 5.6102E-05 -0.23064 -0.00011054 -0.11359 -5.4441E-05 479.2771831640305 73.243 1.1706 76.629 75.892 77.063 3.3861 121 91 2 0 0 0 0.82752 3 17825 17825;18022;18067 2.3027 0 1 114560 + 37823 19081 23944 23955 43026;43027;43028 43026 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2774353027344 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.82752 1 18296 18296 4.756 2.4533 1 595600 + 37824 19081 23944 23955 43029 43029 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2774963378906 2 479.277441 956.540328 0.13854 6.6398E-05 -0.25052 -0.00012007 -0.11198 -5.3671E-05 479.2771390928401 76.664 0.60101 80.079 79.988 80.589 3.4149 73 56 2 0 0 0 0.82752 1 19063 19063 2.0598 1.2661 1 543510 + 37825 19081 23944 23955 43030 43030 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN47_class_I_Rep_1 2 479.27691650390625 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.718 1 77.104 76.604 77.604 3.3861 0 0 0 0.40625 1 18112 18112 2.3027 0 1 + 37826 19081 23944 23955 43031 43031 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN47_class_I_Rep_2 3 479.2774353027344 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.82752 2 18518 18482;18518 7.9102 3.1541 1 542900 + 37827 19081 23944 23955 43032;43033 43033 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN48_class_I_Rep_1 5 479.2768859863281 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.353 1 76.834 76.334 77.334 3.4812 0 0 0 0.40625 1 17279 17279 2.3027 0 1 + 37828 19081 23944 23955 43034 43034 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN48_class_I_Rep_1 5 479.277587890625 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.491 1 76.973 76.473 77.473 3.4812 0 0 0 0.4044 1 17322 17322 4.756 2.4533 1 + 37829 19081 23944 23955 43035 43035 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN48_class_I_Rep_1 5 479.2775573730469 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.66 1 77.141 76.641 77.641 3.4812 0 0 0 0.40625 1 17372 17372 2.3027 0 1 + 37830 19081 23944 23955 43036 43036 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN48_class_I_Rep_1 5 479.27752685546875 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.807 1 77.288 76.788 77.788 3.4812 0 0 0 0.40625 1 17413 17413 2.3027 0 1 + 37831 19081 23944 23955 43037 43037 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN48_class_I_Rep_1 5 479.2807312011719 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 74.747 1 78.237 77.737 78.737 3.49 0 0 0 0.4044 1 17676 17676 4.756 0 1 + 37832 19081 23944 23955 43038 43038 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MSMS UPN48_class_I_Rep_1 5 479.27716064453125 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 78.342 1 81.865 81.365 82.365 3.5221 0 0 0 0.40625 1 18682 18682 2.3027 0 1 + 37833 19081 23944 23955 43039 43039 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN48_class_I_Rep_3 7 479.2774963378906 2 479.277441 956.540328 0.27208 0.0001304 -0.48483 -0.00023237 -0.21274 -0.00010196 479.27708748835823 73.048 1.1217 76.585 75.956 77.078 3.5373 134 101 2 0 0 0 0.82752 1 17151 17151 2.3027 0 1 173730 + 37834 19081 23944 23955 43040 43040 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MSMS UPN48_class_I_Rep_3 7 479.2791748046875 2 479.277441 956.540328 0.26784 0.00012837 1.3621 0.00065283 1.63 0.0007812 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.82752 2 17491 17491;17523 4.756 1.1595 1 496720 + 37835 19081 23944 23955 43041;43042 43041 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 479.277441 956.540328 0.23848 0.0001143 -0.51139 -0.0002451 -0.27291 -0.0001308 479.27721767526293 77.051 0.27489 77.051 76.878 77.153 0 0.015266 -3.1674E-05 NaN 2.3027 34 27 2 NaN NaN NaN NaN 0 NaN NaN 0 284570 + 37836 19081 23944 23955 0.060319920203255606 RQPDSKVK 8 Unmodified _RQPDSKVK_ 0 0 0 REV__ENSG00000134046|ENST00000256429|MBD2 REV__ENSG00000134046|ENST00000256429|MBD2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 479.277441 956.540328 0.16339 7.8309E-05 -0.41417 -0.0001985 -0.25078 -0.0001202 479.2771276212264 73.715 0.30605 77.02 76.929 77.235 3.3048 -0.015266 6.1513E-05 NaN 2.3027 44 29 2 NaN NaN NaN NaN 0 NaN NaN 0 96543 + 37837 19081 23944 23955 0.060319920203255606 RQPFIRIQ 8 Unmodified _RQPFIRIQ_ 0 0 0 REV__MER63A_dup2577|chr12:104548277-104548477:-|1.3212991736303503|0.003140066898208|8.72|151.0|6|2|sense REV__MER63A_dup2577|chr12:104548277-104548477:-|1.3212991736303503|0.003140066898208|8.72|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 529.3153686523438 2 529.3169 1056.61925 NaN NaN NaN NaN NaN NaN NaN 20.697 1 24.34 23.84 24.84 3.6436 0 0 0 0.40746 1 2124 2124 0.69038 0 1 + 37838 31516 23945 23956 43043 43043 0.09320264045254589 RQPFSIKV 8 Unmodified _RQPFSIKV_ 0 0 0 nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM nc|ENSG00000257335|O43451-1|MGAM nc|ENSG00000257335|O43451-1|MGAM MULTI-MSMS UPN48_class_I_Rep_1 5 487.7921447753906 2 487.792727 973.5709 0.18092 8.8252E-05 -0.79756 -0.00038904 -0.61663 -0.00030079 487.79192990158776 74.934 0.86096 78.424 77.821 78.682 3.49 125 91 2 0 0 0 0.82752 1 17756 17756 7.2892 0 1 180270 37839 5770 23946 23957 43044 43044 0.08305770405377189 RQPKAGESLA 10 Unmodified _RQPKAGESLA_ 0 0 0 ENST00000512206.1_1_12:54428374-54428791:+|nuORF ENST00000512206.1_1_12:54428374-54428791:+|nuORF ENST00000512206.1_1_12:54428374-54428791:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.7947998046875 2 528.793455 1055.57236 -0.23783 -0.00012576 0.29267 0.00015476 0.05484 2.8999E-05 528.7935218224331 31.201 0.61245 34.5 34.28 34.892 3.2991 84 50 2 0 0 0 0.54822 1 5251 5251 5.7319 1.7875 1 98043 37840 7191 23947 23958 43045 43045 0.04679359703482078 RQPKAGESLA 10 Unmodified _RQPKAGESLA_ 0 0 0 ENST00000512206.1_1_12:54428374-54428791:+|nuORF ENST00000512206.1_1_12:54428374-54428791:+|nuORF ENST00000512206.1_1_12:54428374-54428791:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 528.7933959960938 2 528.793455 1055.57236 0.41749 0.00022076 -0.19822 -0.00010482 0.21927 0.00011595 528.7932275575378 31.271 0.37156 34.912 34.781 35.152 3.641 56 37 2 0 0 0 0.55148 1 4686 4686 5.2969 0.54088 1 76942 37841 7191 23947 23958 43046 43046 0.04679359703482078 RQPKAGESLA 10 Unmodified _RQPKAGESLA_ 0 0 0 ENST00000512206.1_1_12:54428374-54428791:+|nuORF ENST00000512206.1_1_12:54428374-54428791:+|nuORF ENST00000512206.1_1_12:54428374-54428791:+|nuORF MSMS UPN48_class_I_Rep_2 6 528.794189453125 2 528.793455 1055.57236 NaN NaN NaN NaN NaN NaN NaN 31.516 1 35.157 34.657 35.657 3.641 0 0 0 0.53105 1 4751 4751 3.2813 0.28607 1 37842 7191 23947 23958 43047 43047 0.04679359703482078 RQPLITLQY 9 Unmodified _RQPLITLQY_ 0 0 0 ENSG00000062716|ENST00000262291|VMP1;ENST00000588131.1_1_17:57785078-57812835:+|nuORF ENSG00000062716|ENST00000262291|VMP1 ENSG00000062716|ENST00000262291|VMP1 MULTI-MSMS UPN46_class_I_Rep_3 1 566.32958984375 2 566.329673 1130.64479 0.3869 0.00021911 -0.34142 -0.00019336 0.045477 2.5755E-05 566.3294325240818 61.58 0.44277 61.58 61.396 61.838 0 66 42 2 0 0 0 0.029742 3 13699 13699;13736;13746 57.249 25.981 1 304740 37843 977 23948 23959 43048;43049;43050 43048 0.08469693777055909 RQPNHYLQ 8 Unmodified _RQPNHYLQ_ 0 0 0 ENST00000558995.5_1_14:24543475-24546936:+|nuORF;ENSG00000100884|ENST00000689861|CPNE6;nc|ENSG00000100884|O95741-2|CPNE6 ENST00000558995.5_1_14:24543475-24546936:+|nuORF ENST00000558995.5_1_14:24543475-24546936:+|nuORF MSMS UPN46_class_I_Rep_3 1 528.2737426757812 2 528.27269 1054.53083 NaN NaN NaN NaN NaN NaN NaN 91.685 1 91.685 91.185 92.185 0 0 0 0 0.40625 1 22155 22155 2.3027 0 1 37844 1536 23949 23960 43051 43051 0.005742237347931223 RQPPGWRR 8 Unmodified _RQPPGWRR_ 0 0 0 L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|63|2|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|63|2|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|63|2|sense MSMS UPN47_class_I_Rep_1 2 526.7960205078125 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 23.093 1 26.797 26.297 27.297 3.7042 0 0 0 0.40625 1 2800 2800 2.3027 0 1 37845 14675 23950 23961 43052 43052 0.05505342445508177 RQPPGWRR 8 Unmodified _RQPPGWRR_ 0 0 0 L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|63|2|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|63|2|sense L1PA6_dup784|chr2:176305924-176312032:-|5.124567264980408|0.4129733467657008|3.63|151.0|63|2|sense MSMS UPN48_class_I_Rep_2 6 526.7987670898438 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 18.479 1 22.13 21.63 22.63 3.6509 0 0 0 0.40746 1 1243 1243 0.69038 0 1 37846 14675 23950 23961 43053 43053 0.05505342445508177 RQPRHLVLT 9 Unmodified _RQPRHLVLT_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MULTI-MSMS UPN46_class_I_Rep_3 1 560.3403930664062 2 560.340907 1118.66726 0.43691 0.00024482 -0.56956 -0.00031915 -0.13265 -7.4327E-05 560.3404844410369 99.664 0.046837 99.664 99.624 99.671 0 7 5 2 0 0 0 0.50088 1 24286 24286 0.52476 0 1 34638 37847 4499 23951 23962 43054 43054 0.11267337965296065 RQPRHLVLT 9 Unmodified _RQPRHLVLT_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS UPN46_class_I_Rep_3 1 560.3402099609375 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 98.536 1 98.536 98.036 99.036 0 0 0 0 0.4007 1 23990 23990 0.52476 0 1 37848 4499 23951 23962 43055 43055 0.11267337965296065 RQPRHLVLT 9 Unmodified _RQPRHLVLT_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MSMS UPN47_class_I_Rep_1 2 560.3397827148438 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 94.721 1 98.472 97.972 98.972 3.7508 0 0 0 0.4007 1 23524 23524 0.52476 0 1 37849 4499 23951 23962 43056 43056 0.11267337965296065 RQPRHLVLT 9 Unmodified _RQPRHLVLT_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 560.340907 1118.66726 0.63485 0.00035573 -0.98156 -0.00055001 -0.34671 -0.00019428 560.3403006686295 95.926 0.033798 99.401 99.385 99.418 3.4753 -0.13139 -0.00034932 NaN 0.52476 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48358 37850 4499 23951 23962 0.11267337965296065 RQPRHRRQ 8 Unmodified _RQPRHRRQ_ 0 0 0 REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.3296508789062 2 567.329196 1132.64384 0.46053 0.00026127 1.1871 0.0006735 1.6477 0.00093478 567.3296614006246 84.684 0.24915 84.684 84.553 84.802 0 59 23 3 0 0 0 0.82752 1 20128 20128 4.756 0 1 312440 + 37851 31434 23952 23963 43057 43057 0.08282336971365112 RQPRHRRQ 8 Unmodified _RQPRHRRQ_ 0 0 0 REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|31|3|sense MSMS UPN47_class_I_Rep_1 2 567.3299560546875 2 567.329196 1132.64384 NaN NaN NaN NaN NaN NaN NaN 86.36 1 89.975 89.475 90.475 3.6153 0 0 0 0.40625 1 21573 21573 2.3027 0.4585 1 + 37852 31434 23952 23963 43058 43058 0.08282336971365112 RQPRRRQH 8 Unmodified _RQPRRRQH_ 0 0 0 nc|ENSG00000196810|C0HM98|CTBP1-DT;ENST00000578730.1_1_4:1244361-1244919:+|nuORF nc|ENSG00000196810|C0HM98|CTBP1-DT nc|ENSG00000196810|C0HM98|CTBP1-DT MSMS UPN48_class_I_Rep_2 6 567.329345703125 2 567.329196 1132.64384 NaN NaN NaN NaN NaN NaN NaN 93.828 1 97.604 97.104 98.104 3.7761 0 0 0 0.40746 1 22311 22311 0.69038 0 1 37853 7546 23953 23964 43059 43059 0.08282336971365112 RQPRYSYF 8 Unmodified _RQPRYSYF_ 0 0 0 REV__L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|23|2|sense REV__L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|23|2|sense MSMS UPN48_class_I_Rep_3 7 558.7828369140625 2 558.78289 1115.55123 NaN NaN NaN NaN NaN NaN NaN 30.428 1 34.142 33.642 34.642 3.7146 0 0 0 0.40746 1 4387 4387 0.69038 0 1 + 37854 28091 23954 23965 43060 43060 -0.0019260560538896243 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|6|intron;MAP3K5|p.A1077Gfs*2|1|0.07|ENSG00000197442|chr6:136583736-136583737|-/C|frameshift_variant;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|7|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|10|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|2|intron;ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|2|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|1|intron;ENSG00000197442.10,MAP3K5,chr6,-,I5.1,136696058,136697218|25|6.08|2|intron ENSG00000197442|ENST00000359015|MAP3K5 ENSG00000197442|ENST00000359015|MAP3K5 MULTI-MSMS UPN48_class_I_Rep_1 5 581.3153076171875 2 580.81419 1159.61383 0.40608 0.00023586 0.32567 0.00018915 0.73175 0.00042501 580.8141958025071 49.79 1.0203 53.315 52.921 53.941 3.5246 125 63 3 0 0 0 0.19147 3 10049 10049;10057;10098 21.537 7.6309 1 274840 37855 5371 23955 23966 43061;43062;43063 43061 0.040405404628018005 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|6|intron;MAP3K5|p.A1077Gfs*2|1|0.07|ENSG00000197442|chr6:136583736-136583737|-/C|frameshift_variant;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|7|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|10|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|2|intron;ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|2|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|1|intron;ENSG00000197442.10,MAP3K5,chr6,-,I5.1,136696058,136697218|25|6.08|2|intron ENSG00000197442|ENST00000359015|MAP3K5 ENSG00000197442|ENST00000359015|MAP3K5 MULTI-MSMS UPN48_class_I_Rep_2 6 580.812255859375 2 580.81419 1159.61383 0.42676 0.00024787 0.098507 5.7214E-05 0.52527 0.00030508 580.8140689367835 49.663 0.86378 53.358 52.902 53.766 3.6946 90 56 2 0 0 0 0.23293 3 9970 9970;10021;10066 18.146 3.3081 1 378250 37856 5371 23955 23966 43064;43065;43066 43064 0.040405404628018005 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|6|intron;MAP3K5|p.A1077Gfs*2|1|0.07|ENSG00000197442|chr6:136583736-136583737|-/C|frameshift_variant;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|7|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|10|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|2|intron;ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|2|intron;ENSG00000197442.10,MAP3K5,chr6,-,I8.1,136659379,136669282|48|8.53|1|intron;ENSG00000197442.10,MAP3K5,chr6,-,I5.1,136696058,136697218|25|6.08|2|intron ENSG00000197442|ENST00000359015|MAP3K5 ENSG00000197442|ENST00000359015|MAP3K5 MULTI-MSMS UPN48_class_I_Rep_3 7 580.8135375976562 2 580.81419 1159.61383 0.38609 0.00022425 0.38901 0.00022594 0.7751 0.00045019 580.8142002847543 49.727 0.84748 53.348 53.037 53.884 3.621 92 54 2 0 0 0 0.17897 2 9967 9967;10014 22.736 3.4793 1 321180 37857 5371 23955 23966 43067;43068 43067 0.040405404628018005 RQPWCCAL 8 Unmodified _RQPWCCAL_ 0 0 0 REV__ENST00000361762.3_2_4:30722410-30722659:+|nuORF REV__ENST00000361762.3_2_4:30722410-30722659:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.72735595703125 2 488.728215 975.441877 0.13776 6.7326E-05 -1.1229 -0.0005488 -0.98515 -0.00048147 488.72741780371786 73.228 0.51973 76.614 76.324 76.844 3.3861 53 35 2 0 0 0 0.82752 1 17964 17964 5.2307 0 1 87146 + 37858 21909 23956 23967 43069 43069 -0.04682650820745948 RQPWCCAL 8 Unmodified _RQPWCCAL_ 0 0 0 REV__ENST00000361762.3_2_4:30722410-30722659:+|nuORF REV__ENST00000361762.3_2_4:30722410-30722659:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 488.7274475097656 2 488.728215 975.441877 0.26588 0.00012994 -1.4342 -0.00070092 -1.1683 -0.00057098 488.72725006942267 73.422 0.24974 76.726 76.657 76.907 3.3048 32 21 2 0 0 0 0.82752 1 18065 18065 5.2307 0 1 75431 + 37859 21909 23956 23967 43070 43070 -0.04682650820745948 RQQDIWFK 8 Unmodified _RQQDIWFK_ 0 0 0 REV__nc|ENSG00000185621|Q96KR4-2|LMLN REV__nc|ENSG00000185621|Q96KR4-2|LMLN MULTI-MSMS UPN47_class_I_Rep_3 4 560.7991943359375 2 560.79854 1119.58253 0.44912 0.00025187 -1.6241 -0.00091077 -1.1749 -0.0006589 560.7974947441052 71.938 0.47599 75.157 74.889 75.365 3.2188 47 38 2 0 0 0 0.82752 1 17685 17685 12.532 0 1 46797 + 37860 20859 23957 23968 43071 43071 0.027519674287077578 RQQEQLRY 8 Unmodified _RQQEQLRY_ 0 0 0 ENSG00000130254|ENST00000252542|SAFB2 ENSG00000130254|ENST00000252542|SAFB2 ENSG00000130254|ENST00000252542|SAFB2 MSMS UPN47_class_I_Rep_1 2 560.7958374023438 2 560.796529 1119.5785 NaN NaN NaN NaN NaN NaN NaN 65.581 1 68.937 68.437 69.437 3.3557 0 0 0 0.40625 1 15653 15653 2.3027 0 1 37861 2649 23958 23969 43072 43072 0.023498779349893084 RQQGAQRI 8 Unmodified _RQQGAQRI_ 0 0 0 REV__ENST00000555521.1_1_14:47343236-47389373:-|nuORF REV__ENST00000555521.1_1_14:47343236-47389373:-|nuORF MSMS UPN47_class_I_Rep_2 3 478.77056884765625 2 478.772857 955.531161 NaN NaN NaN NaN NaN NaN NaN 35.204 1 38.63 38.13 39.13 3.4253 0 0 0 0.40625 1 6461 6461 2.3027 0 1 + 37862 19324 23959 23970 43073 43073 0.05161643454653131 RQQHRRPR 8 Unmodified _RQQHRRPR_ 0 0 0 REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 567.8323364257812 2 567.329196 1132.64384 0.42169 0.00023924 1.2096 0.00068624 1.6313 0.00092548 567.329812850314 82.243 0.35793 85.755 85.615 85.973 3.5122 58 42 2 0 0 0 0.82752 1 20539 20539 0.69038 0 1 78278 + 37863 21655 23960 23971 43074 43074 0.08282336971365112 RQQKTVTPKKW 11 Unmodified _RQQKTVTPKKW_ 0 0 0 L1MEc_dup7212|chr6:107234919-107236319:+|1.205108798702305|0.0295453438508231|5.35|151.0|3|1|sense L1MEc_dup7212|chr6:107234919-107236319:+|1.205108798702305|0.0295453438508231|5.35|151.0|3|1|sense L1MEc_dup7212|chr6:107234919-107236319:+|1.205108798702305|0.0295453438508231|5.35|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 466.6080017089844 3 467.277132 1398.80957 0.23179 0.00010831 -0.95265 -0.00044515 -0.72086 -0.00033684 467.27667406918806 96.541 0.05101 96.541 96.518 96.57 0 7 5 2 0 0 0 22.551 1 23477 23477 1.2148 0.70888 1 55536 37864 13133 23961 23972 43075 43075 0.12611505916834176 RQQKTVTPKKW 11 Unmodified _RQQKTVTPKKW_ 0 0 0 L1MEc_dup7212|chr6:107234919-107236319:+|1.205108798702305|0.0295453438508231|5.35|151.0|3|1|sense L1MEc_dup7212|chr6:107234919-107236319:+|1.205108798702305|0.0295453438508231|5.35|151.0|3|1|sense L1MEc_dup7212|chr6:107234919-107236319:+|1.205108798702305|0.0295453438508231|5.35|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 467.277132 1398.80957 0.067616 3.1595E-05 -1.0189 -0.00047612 -0.95132 -0.00044453 467.2765365503533 93.181 0.19336 96.805 96.698 96.891 3.624 0.132 -2.774E-05 NaN 1.2148 29 25 2 NaN NaN NaN NaN 0 NaN NaN 0 129340 37865 13133 23961 23972 0.12611505916834176 RQQLTELY 8 Unmodified _RQQLTELY_ 0 0 0 ENSG00000123405|ENST00000435572|NFE2;chr12:54295304-54295544|151|28.28|0.75|5.24|-|ENST00000312156|NFE2,NFE2 ENSG00000123405|ENST00000435572|NFE2 ENSG00000123405|ENST00000435572|NFE2 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7817993164062 2 525.782556 1049.55056 0.016378 8.6113E-06 0.118 6.2044E-05 0.13438 7.0655E-05 525.7824905547996 42.91 0.80239 46.15 45.758 46.56 3.2394 93 52 2 0 0 0 0.82752 1 8951 8951 11.64 0 1 152720 37866 583 23962 23973 43076 43076 0.027765549549030766 RQQNKTWE 8 Unmodified _RQQNKTWE_ 0 0 0 HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|111|2|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|111|2|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|111|2|sense MSMS UPN48_class_I_Rep_2 6 545.2744750976562 2 545.275429 1088.53631 NaN NaN NaN NaN NaN NaN NaN 115.17 1 118.84 118.34 119.34 3.6616 0 0 0 0.40746 1 27560 27560 0.69038 0 1 37867 8256 23963 23974 43077 43077 -0.004420974733875482 RQQQSQTAY 9 Unmodified _RQQQSQTAY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN46_class_I_Rep_3 1 555.2705688476562 2 555.270344 1108.52613 -0.1767 -9.8115E-05 -0.14815 -8.2262E-05 -0.32485 -0.00018038 555.2702589927196 14.829 0.4935 14.829 14.673 15.166 0 113 60 3 0 0 0 0.081756 4 743 709;743;769;804 38.176 20.029 1 110020 37868 5036 23964 23975 43078;43079;43080;43081 43079 -0.02378705198634634 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_1 2 495.7962951660156 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 72.664 1 76.044 75.544 76.544 3.3799 0 0 0 0.40738 1 17795 17795 0.79363 0 1 37869 1187 23965 23976 43082 43082 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_1 2 495.7957458496094 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.701 1 79.105 78.605 79.605 3.4034 0 0 0 0.40738 1 18700 18700 0.79363 0 1 37870 1187 23965 23976 43083 43083 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_1 2 495.7967224121094 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.982 1 79.386 78.886 79.886 3.4034 0 0 0 0.40738 1 18783 18783 0.79363 0 1 37871 1187 23965 23976 43084 43084 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_2 3 495.79656982421875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.052 1 78.365 77.865 78.865 3.3127 0 0 0 0.40738 1 18514 18514 0.79363 0 1 37872 1187 23965 23976 43085 43085 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_2 3 495.7961120605469 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.198 1 79.52 79.02 80.02 3.3216 0 0 0 0.40738 1 18853 18853 0.79363 0 1 37873 1187 23965 23976 43086 43086 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_2 3 495.79571533203125 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.351 1 79.673 79.173 80.173 3.3216 0 0 0 0.40738 1 18897 18897 0.79363 0 1 37874 1187 23965 23976 43087 43087 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_2 3 495.7958679199219 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.871 1 80.203 79.703 80.703 3.3315 0 0 0 0.40738 1 19043 19043 0.79363 0 1 37875 1187 23965 23976 43088 43088 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_3 4 495.795654296875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 72.845 1 76.073 75.573 76.573 3.2271 0 0 0 0.40738 1 17955 17955 0.79363 0 1 37876 1187 23965 23976 43089 43089 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_3 4 495.79583740234375 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 73.101 1 76.328 75.828 76.828 3.2271 0 0 0 0.40738 1 18032 18032 0.79363 0 1 37877 1187 23965 23976 43090 43090 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_3 4 495.7959899902344 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 73.243 1 76.47 75.97 76.97 3.2271 0 0 0 0.40738 1 18076 18076 0.79363 0 1 37878 1187 23965 23976 43091 43091 0.08184288636891779 RQRALYAL 8 Unmodified _RQRALYAL_ 0 0 0 nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-4|PCM1 MSMS UPN47_class_I_Rep_3 4 495.7960510253906 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.183 1 79.44 78.94 79.94 3.2573 0 0 0 0.40738 1 18932 18932 0.79363 0 1 37879 1187 23965 23976 43092 43092 0.08184288636891779 RQRFDRKLK 9 Unmodified _RQRFDRKLK_ 0 0 0 nc|ENSG00000244754|Q92802-2|N4BP2L2 nc|ENSG00000244754|Q92802-2|N4BP2L2 nc|ENSG00000244754|Q92802-2|N4BP2L2 MSMS UPN46_class_I_Rep_3 1 623.8790283203125 2 623.878188 1245.74182 NaN NaN NaN NaN NaN NaN NaN 65.001 1 65.001 64.501 65.501 0 0 0 0 0.4007 1 14670 14670 0.52476 0 1 37880 16837 23966 23977 43093 43093 0.12878100776697465 RQRFLKLKYY 10 Unmodified _RQRFLKLKYY_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|7|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|8|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|2|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 471.79547119140625 3 472.282106 1413.82449 0.058869 2.7803E-05 2.6595 0.001256 2.7184 0.0012838 472.28314956218213 93.785 0.086685 97.19 97.142 97.228 3.4052 14 10 2 0 0 0 0.84575 1 23362 23362 0.15932 0 1 51466 37881 1018 23967 23978 43094 43094 0.13412997784848812 RQRFLKLKYY 10 Unmodified _RQRFLKLKYY_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|7|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|8|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|2|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MSMS UPN48_class_I_Rep_2 6 472.2839050292969 3 472.282106 1413.82449 0.21233 0.00010028 2.908 0.0013734 3.1204 0.0014737 472.2834264277864 93.583 0.082642 97.353 97.279 97.361 3.77 17 10 2 0 0 0 0.56433 1 22248 22248 0.77653 0.27058 1 82479 37882 1018 23967 23978 43095 43095 0.13412997784848812 RQRFLKLKYY 10 Unmodified _RQRFLKLKYY_ 0 0 0 ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron;ENSG00000066279|ENST00000367409|ASPM;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|7|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|8|intron;ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|2|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 472.282106 1413.82449 0.24577 0.00011607 2.2876 0.0010804 2.5334 0.0011965 472.28297039414906 97.513 0.20027 97.513 97.367 97.567 0 0.17223 -0.00061735 NaN 0.77653 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 193050 37883 1018 23967 23978 0.13412997784848812 RQRFMQVF 8 Unmodified _RQRFMQVF_ 0 0 0 AluSq_dup9401|chrX:2660038-2660350:-|1.2210420549269487|0.1430212082093444|3.09|151.0|16|2|anti-sense AluSq_dup9401|chrX:2660038-2660350:-|1.2210420549269487|0.1430212082093444|3.09|151.0|16|2|anti-sense AluSq_dup9401|chrX:2660038-2660350:-|1.2210420549269487|0.1430212082093444|3.09|151.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 556.2966918945312 2 556.295111 1110.57567 NaN NaN NaN NaN NaN NaN NaN 105.08 1 105.08 104.58 105.58 0 0 0 0 0.40625 1 25635 25635 2.3027 0.24298 1 37884 245 23968 23979 43096 43096 0.024803312764788643 RQRFMQVF 8 Unmodified _RQRFMQVF_ 0 0 0 AluSq_dup9401|chrX:2660038-2660350:-|1.2210420549269487|0.1430212082093444|3.09|151.0|16|2|anti-sense AluSq_dup9401|chrX:2660038-2660350:-|1.2210420549269487|0.1430212082093444|3.09|151.0|16|2|anti-sense AluSq_dup9401|chrX:2660038-2660350:-|1.2210420549269487|0.1430212082093444|3.09|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_1 5 556.2968139648438 2 556.295111 1110.57567 NaN NaN NaN NaN NaN NaN NaN 102 1 105.61 105.11 106.11 3.612 0 0 0 0.40625 1 24609 24609 2.3027 0.24298 1 37885 245 23968 23979 43097 43097 0.024803312764788643 RQRGKVPH 8 Unmodified _RQRGKVPH_ 0 0 0 MSTA_dup13328|chr10:119064329-119064704:+|1.267073615387453|0.0882062588222133|3.84|151.0|14|1|anti-sense MSTA_dup13328|chr10:119064329-119064704:+|1.267073615387453|0.0882062588222133|3.84|151.0|14|1|anti-sense MSTA_dup13328|chr10:119064329-119064704:+|1.267073615387453|0.0882062588222133|3.84|151.0|14|1|anti-sense MSMS UPN48_class_I_Rep_1 5 489.2906799316406 2 489.291217 976.567881 NaN NaN NaN NaN NaN NaN NaN 35.68 1 39.191 38.691 39.691 3.5101 0 0 0 0.40746 1 5867 5867 0.69038 0 1 37886 16524 23969 23980 43098 43098 0.078659400712354 RQRHIKKKKT 10 Unmodified _RQRHIKKKKT_ 0 0 0 L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|71|2|sense;L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|30|2|sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|71|2|sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|71|2|sense MSMS UPN46_class_I_Rep_3 1 441.6204528808594 3 441.621233 1321.84187 NaN NaN NaN NaN NaN NaN NaN 95.796 1 95.796 95.296 96.296 0 0 0 0 0.53105 1 23274 23274 0.15932 0 1 37887 9505 23970 23981 43099 43099 0.1938233811047212 RQRHLLLEV 9 Unmodified _RQRHLLLEV_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MULTI-SECPEP UPN46_class_I_Rep_3 1 582.3532104492188 2 582.354014 1162.69348 0.51874 0.00030209 -1.0291 -0.00059929 -0.51034 -0.0002972 582.3532769300892 99.533 0.13401 99.533 99.471 99.605 0 23 14 3 0 0 0 0.12462 1 24269 24269 1.8442 0 1 462450 + 37888 20149 23971 23982 43100 43100 0.11863607136797327 RQRHLLLEV 9 Unmodified _RQRHLLLEV_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 582.354014 1162.69348 0.49297 0.00028708 -0.94541 -0.00055056 -0.45244 -0.00026348 582.3532968215562 95.639 0.27892 99.548 99.487 99.766 3.9084 0.0074331 1.1732E-05 NaN 1.8442 90 38 4 NaN NaN NaN NaN 0 NaN NaN 0 637490 + 37889 20149 23971 23982 0.11863607136797327 RQRIVMINL 9 Unmodified _RQRIVMINL_ 0 0 0 REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|85|3|sense REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|85|3|sense MSMS UPN46_class_I_Rep_3 1 571.845703125 2 571.844968 1141.67538 NaN NaN NaN NaN NaN NaN NaN 21.722 1 21.722 21.222 22.222 0 0 0 0 0.4007 1 2471 2471 0.52476 0 1 + 37890 28708 23972 23983 43101 43101 0.11021148890449695 RQRKGRHR 8 Unmodified _RQRKGRHR_ 0 0 0 REV__LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense REV__LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 547.3325805664062 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 103 1 106.78 106.28 107.28 3.7788 0 0 0 0.40746 1 25339 25339 0.69038 0 1 + 37891 30832 23973 23984 43102 43102 0.10630640833983307 RQRKGRHR 8 Unmodified _RQRKGRHR_ 0 0 0 REV__LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense REV__LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 547.3328857421875 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 93.36 1 96.765 96.265 97.265 3.4052 0 0 0 0.40746 1 23276 23276 0.69038 0 1 + 37892 30832 23973 23984 43103 43103 0.10630640833983307 RQRKIKKKS 9 Unmodified _RQRKIKKKS_ 0 0 0 L1PB4_dup7219|chr20:25723601-25726009:-|1.0405219862193678|0.1422720329678963|2.87|150.0|7|1|sense L1PB4_dup7219|chr20:25723601-25726009:-|1.0405219862193678|0.1422720329678963|2.87|150.0|7|1|sense L1PB4_dup7219|chr20:25723601-25726009:-|1.0405219862193678|0.1422720329678963|2.87|150.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 586.3923950195312 2 586.390931 1170.76731 NaN NaN NaN NaN NaN NaN NaN 48.943 1 48.943 48.443 49.443 0 0 0 0 0.40038 1 10239 10239 0.6015 0 1 37893 15349 23974 23985 43104 43104 0.18875575299125558 RQRKKCKC 8 Unmodified _RQRKKCKC_ 0 0 0 REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|27|2|sense REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|27|2|sense MSMS UPN48_class_I_Rep_1 5 525.2952270507812 2 525.294588 1048.57462 NaN NaN NaN NaN NaN NaN NaN 27.595 1 31.158 30.658 31.658 3.5629 0 0 0 0.40746 1 3578 3578 0.69038 0 1 + 37894 29373 23975 23986 43105 43105 0.052277936359359956 RQRKRKRGR 9 Unmodified _RQRKRKRGR_ 0 0 0 REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|15|2|sense REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 414.26947021484375 3 414.269305 1239.78609 NaN NaN NaN NaN NaN NaN NaN 116.25 1 119.71 119.21 120.21 3.462 0 0 0 0.40177 1 28604 28604 0.26902 0 1 + 37895 23510 23976 23987 43106 43106 0.17578549713516622 RQRKVILK 8 Unmodified _RQRKVILK_ 0 0 0 L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 520.8545532226562 2 520.856193 1039.69783 NaN NaN NaN NaN NaN NaN NaN 109.01 1 112.55 112.05 113.05 3.5382 0 0 0 0.40746 1 26755 26755 0.69038 0 1 37896 12769 23977 23988 43107 43107 0.17957116350362412 RQRKVILK 8 Unmodified _RQRKVILK_ 0 0 0 L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense L1ME3Cz_dup2806|chr3:183770465-183771255:-|2.089599956536321|0.1133123468219926|4.2|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 520.8192749023438 2 520.856193 1039.69783 NaN NaN NaN NaN NaN NaN NaN 107.62 1 111.3 110.8 111.8 3.6783 0 0 0 0.40746 1 25442 25442 0.69038 0 1 37897 12769 23977 23988 43108 43108 0.17957116350362412 RQRLRGLL 8 Unmodified _RQRLRGLL_ 0 0 0 ENST00000397621.5_1_16:746860-755534:-|nuORF REV__AluSx_dup57268|chr9:129915378-129915663:-|1.5990424415251787|0.2210069721965245|2.86|151.0|5|2|sense REV__AluSx_dup57268|chr9:129915378-129915663:-|1.5990424415251787|0.2210069721965245|2.86|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 506.3080749511719 2 506.330342 1010.64613 NaN NaN NaN NaN NaN NaN NaN 82.508 1 82.508 82.008 83.008 0 0 0 0 0.40746 1 19550 19550 0.69038 0 1 37898 6576 23978 23989 43109 43109 0.14123372656467836 RQRLVLFLY 9 Unmodified _RQRLVLFLY_ 0 0 0 L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|308|2|anti-sense L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|308|2|anti-sense L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|308|2|anti-sense MSMS UPN47_class_I_Rep_1 2 604.3667602539062 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 97.655 1 101.44 100.94 101.94 3.7861 0 0 0 0.40038 1 24196 24196 0.6015 0.14316 1 37899 9375 23979 23990 43110 43110 0.12861965801971564 RQRLYLFL 8 Unmodified _RQRLYLFL_ 0 0 0 REV__MLT2A2_dup241|chr1:243289045-243289490:-|1.320267927406906|0.0166278907082709|6.31|151.0|9|2|sense REV__MLT2A2_dup241|chr1:243289045-243289490:-|1.320267927406906|0.0166278907082709|6.31|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 554.8338623046875 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 78.677 1 82.02 81.52 82.52 3.3428 0 0 0 0.40738 1 19553 19553 0.79363 0 1 + 37900 31812 23980 23991 43111 43111 0.1057772122210281 RQRPFVVK 8 Unmodified _RQRPFVVK_ 0 0 0 ENST00000246421.4_1_1:1671049-1677425:-|nuORF REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|27|1|sense REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|27|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.238037109375 2 515.319443 1028.62433 0.077953 4.0171E-05 -0.80188 -0.00041322 -0.72392 -0.00037305 515.3190887969093 62.995 0.43159 66.251 65.945 66.376 3.2558 43 26 2 0 0 0 0.82752 1 14837 14837 0.69038 0 1 60749 37901 5911 23981 23992 43112 43112 0.11116567907879471 RQRPHILH 8 Unmodified _RQRPHILH_ 0 0 0 L1MCa_dup4003|chr9:92700648-92701571:-|1.6987261873806023|0.0098014163221814|7.44|151.0|33|3|sense L1MCa_dup4003|chr9:92700648-92701571:-|1.6987261873806023|0.0098014163221814|7.44|151.0|33|3|sense L1MCa_dup4003|chr9:92700648-92701571:-|1.6987261873806023|0.0098014163221814|7.44|151.0|33|3|sense MSMS UPN48_class_I_Rep_2 6 528.8143310546875 2 528.812316 1055.61008 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.09 115.59 116.59 3.6648 0 0 0 0.40738 1 26783 26783 0.79363 0 1 37902 11803 23982 23993 43113 43113 0.08449915479604897 RQRPLSILPQ 10 Unmodified _RQRPLSILPQ_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MSMS UPN47_class_I_Rep_2 3 403.58123779296875 3 403.247173 1206.71969 -0.41268 -0.00016641 -0.35519 -0.00014323 -0.76787 -0.00030964 403.24689883882144 96.893 0.33633 100.37 100.26 100.59 3.4791 74 46 3 0 0 0 0.56078 1 23818 23818 1.5923 0 1 193270 + 37903 19935 23983 23994 43114 43114 0.12459876308275852 RQRPLSILPQ 10 Unmodified _RQRPLSILPQ_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MATCH UPN47_class_I_Rep_1 2 3 403.247173 1206.71969 0.094688 3.8182E-05 0.55625 0.00022431 0.65094 0.00026249 403.5818651960128 96.646 0.020905 100.42 100.41 100.43 3.7767 0.094321 0.00090439 NaN 1.5923 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 60721 + 37904 19935 23983 23994 0.12459876308275852 RQRPLSILPQ 10 Unmodified _RQRPLSILPQ_ 0 0 0 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 REV__nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MATCH UPN48_class_I_Rep_2 6 3 403.247173 1206.71969 0.082164 3.3132E-05 -1.7893 -0.00072152 -1.7071 -0.00068839 403.58042966998704 96.327 0.0345 100.11 100.08 100.12 3.7804 -0.22048 -0.0019331 NaN 1.5923 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 90604 + 37905 19935 23983 23994 0.12459876308275852 RQRQYRKRKLQ 11 Unmodified _RQRQYRKRKLQ_ 0 0 0 L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|2|1|sense L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|2|1|sense L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 520.6500854492188 3 520.649963 1558.92806 0.37021 0.00019275 0.32483 0.00016912 0.69505 0.00036188 520.6502728008862 107.23 0.21668 110.91 110.84 111.06 3.6783 68 18 7 0 0 0 0.68132 1 25325 25325 0.40827 0.041592 1 33516000 37906 10139 23984 23995 43115 43115 0.17095297945206767 RQRRALAEL 9 Unmodified _RQRRALAEL_ 0 0 0 REV__ENST00000519973.5_1_8:23423709-23423784:+|nuORF REV__ENST00000519973.5_1_8:23423709-23423784:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 556.8349609375 2 556.835988 1111.65742 -0.10794 -6.0106E-05 -0.36271 -0.00020197 -0.47065 -0.00026208 556.8357762833032 13.284 0.33085 16.741 16.653 16.984 3.457 56 38 2 0 0 0 0.46869 1 280 280 3.9444 0 1 59692 + 37907 22777 23985 23996 43116 43116 0.1060614995992637 RQRRCCPKE 9 Unmodified _RQRRCCPKE_ 0 0 0 REV__ENSG00000266472|ENST00000614145|MRPS21 REV__ENSG00000266472|ENST00000614145|MRPS21 MSMS UPN48_class_I_Rep_3 7 588.3013916015625 2 588.297859 1174.58116 NaN NaN NaN NaN NaN NaN NaN 37.421 1 41.084 40.584 41.584 3.663 0 0 0 0.38916 1 6306 6306 3.2813 1.4371 1 + 37908 21410 23986 23997 43117 43117 0.0008568679663767398 RQRRESIMINR 11 Unmodified _RQRRESIMINR_ 0 0 0 REV__L1ME1_dup2194|chr1:213270629-213271483:+|1.0460229162700496|0.160644506189018|2.7|151.0|11|1|sense REV__L1ME1_dup2194|chr1:213270629-213271483:+|1.0460229162700496|0.160644506189018|2.7|151.0|11|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.2751159667969 3 486.940526 1457.79975 0.15573 7.5833E-05 -0.82325 -0.00040087 -0.66752 -0.00032504 486.9400587849111 46.347 0.5322 49.984 49.684 50.216 3.6369 57 32 2 0 0 0 0.68132 1 8963 8963 0.40827 0 1 193190 + 37909 27674 23987 23998 43118 43118 0.08915994639801283 RQRRHHRRWRE 11 Unmodified _RQRRHHRRWRE_ 0 0 0 ENSG00000132716|ENST00000368074|DCAF8 ENSG00000132716|ENST00000368074|DCAF8 ENSG00000132716|ENST00000368074|DCAF8 MSMS UPN48_class_I_Rep_1 5 558.3128662109375 3 558.312456 1671.91554 NaN NaN NaN NaN NaN NaN NaN 89.949 1 93.575 93.075 94.075 3.6255 0 0 0 0.38417 1 21616 21616 0 0 1 37910 2772 23988 23999 43119 43119 0.10645699325527858 RQRRKRELRTF 11 Unmodified _RQRRKRELRTF_ 0 0 0 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS UPN48_class_I_Rep_1 5 515.9780883789062 3 515.97808 1544.91241 0.24835 0.00012814 0.27481 0.00014179 0.52316 0.00026994 515.9781497085955 102.66 0.35272 106.28 106.14 106.5 3.6164 64 49 2 0 0 0 0.68491 1 24781 24781 0.08335 0 1 323000 37911 4060 23989 24000 43120 43120 0.16175011428163089 RQRRKRELRTF 11 Unmodified _RQRRKRELRTF_ 0 0 0 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS UPN48_class_I_Rep_2 6 515.9781494140625 3 515.97808 1544.91241 0.34451 0.00017776 0.37875 0.00019543 0.72325 0.00037318 516.312762635817 102.53 0.41893 106.24 105.96 106.38 3.7108 80 60 2 0 0 0 0.68491 1 24280 24280 0.08335 0 1 299120 37912 4060 23989 24000 43121 43121 0.16175011428163089 RQRRKRELRTF 11 Unmodified _RQRRKRELRTF_ 0 0 0 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS UPN48_class_I_Rep_3 7 516.3126831054688 3 515.97808 1544.91241 0.34357 0.00017727 0.22705 0.00011715 0.57062 0.00029443 516.3126546697642 102.64 0.27274 106.42 106.31 106.58 3.776 67 36 2 0 0 0 0.68491 1 24285 24285 0.08335 0 1 311420 37913 4060 23989 24000 43122 43122 0.16175011428163089 RQRRKRELRTF 11 Unmodified _RQRRKRELRTF_ 0 0 0 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS UPN48_class_I_Rep_3 7 516.313232421875 3 515.97808 1544.91241 0.34347 0.00017722 0.25495 0.00013155 0.59842 0.00030877 516.3128022137317 102.85 0.14268 106.62 106.58 106.72 3.776 34 19 2 0 0 0 0.68491 1 24308 24308 0.08335 0.08335 1 274030 37914 4060 23989 24000 43123 43123 0.16175011428163089 RQRRLYRFA 9 Unmodified _RQRRLYRFA_ 0 0 0 REV__nc|ENSG00000125675|P42263|GRIA3 REV__nc|ENSG00000125675|P42263|GRIA3 MULTI-SECPEP UPN48_class_I_Rep_3 7 633.3878784179688 2 633.37053 1264.72651 0.6394 0.00040498 -1.9452 -0.001232 -1.3058 -0.00082706 633.3692019193568 85.984 0.12781 89.755 89.672 89.799 3.7701 20 15 2 0 0 0 0.12462 1 20407 20407 1.8442 0 1 72203 + 37915 18836 23990 24001 43124 43124 0.10473233979519136 RQRRLYRFA 9 Unmodified _RQRRLYRFA_ 0 0 0 REV__nc|ENSG00000125675|P42263|GRIA3 REV__nc|ENSG00000125675|P42263|GRIA3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 633.37053 1264.72651 0.72041 0.00045628 -2.4509 -0.0015523 -1.7304 -0.001096 633.3688074007075 89.843 0.11016 89.843 89.785 89.895 0 0.061374 -0.00087402 NaN 1.8442 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 101950 + 37916 18836 23990 24001 0.10473233979519136 RQRRRGPVR 9 Unmodified _RQRRRGPVR_ 0 0 0 ENST00000555166.5_2_14:57857320-57866549:+|nuORF;ENST00000554703.1_1_14:57857320-57876115:+|nuORF ENST00000555166.5_2_14:57857320-57866549:+|nuORF ENST00000555166.5_2_14:57857320-57866549:+|nuORF MSMS UPN47_class_I_Rep_3 4 590.8663940429688 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 96.043 1 99.453 98.953 99.953 3.4095 0 0 0 0.4007 1 23847 23847 0.52476 0 1 37917 7423 23991 24002 43125 43125 0.13466885413845375 RQRRRIVRE 9 Unmodified _RQRRRIVRE_ 0 0 0 REV__ENST00000514894.5_3_3:133097262-133097334:+|nuORF REV__ENST00000514894.5_3_3:133097262-133097334:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.8930053710938 2 634.892161 1267.76977 0.56744 0.00036026 1.3837 0.00087848 1.9511 0.0012387 634.8926181263143 98.2 0.25562 101.99 101.79 102.04 3.7861 58 34 2 0 0 0 0.49026 1 24310 24310 1.6526 0.17072 1 186590 + 37918 22761 23992 24003 43126 43126 0.14659423756802425 RQRRRIVRE 9 Unmodified _RQRRRIVRE_ 0 0 0 REV__ENST00000514894.5_3_3:133097262-133097334:+|nuORF REV__ENST00000514894.5_3_3:133097262-133097334:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 634.892161 1267.76977 0.51368 0.00032613 1.0146 0.00064416 1.5283 0.00097029 634.892522826382 98.625 0.4368 102.06 101.71 102.14 3.4328 0.1083 -0.00024059 NaN 1.6526 122 61 3 NaN NaN NaN NaN 0 NaN NaN 0 364430 + 37919 22761 23992 24003 0.14659423756802425 RQRRRIVRE 9 Unmodified _RQRRRIVRE_ 0 0 0 REV__ENST00000514894.5_3_3:133097262-133097334:+|nuORF REV__ENST00000514894.5_3_3:133097262-133097334:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 634.892161 1267.76977 0.62042 0.0003939 1.3102 0.0008318 1.9306 0.0012257 634.8926699937593 98.004 0.14368 101.91 101.81 101.96 3.9022 -0.043548 0.00013469 NaN 1.6526 36 18 2 NaN NaN NaN NaN 0 NaN NaN 0 502570 + 37920 22761 23992 24003 0.14659423756802425 RQRRRYWPLWF 11 Unmodified _RQRRRYWPLWF_ 0 0 0 REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|37|1|sense REV__HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|37|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 555.2579956054688 3 555.307537 1662.90078 0.48698 0.00027043 1.3602 0.00075534 1.8472 0.0010258 555.6426019316299 45.051 0.10401 48.567 48.494 48.598 3.5162 11 7 2 0 0 0 22.551 1 8627 8627 0 0 1 95769 + 37921 23641 23993 24004 43127 43127 0.09584814404820463 RQRRSVLL 8 Unmodified _RQRRSVLL_ 0 0 0 REV__AluSx3_dup19934|chr11:34092359-34092657:-|1.054747057635161|0.1196579194838611|3.14|151.0|7|2|sense REV__AluSx3_dup19934|chr11:34092359-34092657:-|1.054747057635161|0.1196579194838611|3.14|151.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 514.8316040039062 2 514.327799 1026.64105 0.28654 0.00014737 1.4828 0.00076262 1.7693 0.00090999 514.3287029591339 71.197 0.081543 74.663 74.605 74.687 3.466 9 6 2 0 0 0 0.82752 1 16630 16630 7.2892 1.0834 1 40255 + 37922 17193 23994 24005 43128 43128 0.12879068793859005 RQRRTIVAK 9 Unmodified _RQRRTIVAK_ 0 0 0 REV__ENSG00000203972|ENST00000371197|GLYATL3 REV__ENSG00000203972|ENST00000371197|GLYATL3 MSMS UPN47_class_I_Rep_2 3 564.3794555664062 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 108.31 1 111.84 111.34 112.34 3.5333 0 0 0 0.38639 1 26257 26257 3.9444 0.94915 1 + 37923 21176 23995 24006 43129 43129 0.14642429230934795 RQRSDRRLRSR 11 Unmodified _RQRSDRRLRSR_ 0 0 0 ENST00000260324.11_1_15:45927092-45951106:+|nuORF ENST00000260324.11_1_15:45927092-45951106:+|nuORF ENST00000260324.11_1_15:45927092-45951106:+|nuORF MSMS UPN48_class_I_Rep_2 6 495.95892333984375 3 495.957567 1484.85087 NaN NaN NaN NaN NaN NaN NaN 95.907 1 99.687 99.187 100.19 3.7804 0 0 0 0.38417 1 22783 22783 1.2148 0.70888 1 37924 5950 23996 24007 43130 43130 0.12784079728862707 RQRSIVLA 8 Unmodified _RQRSIVLA_ 0 0 0 REV__L1PA5_dup8076|chr11:14777676-14783773:+|13.054731108778045|0.3480131190219975|5.23|151.0|154|3|sense REV__L1PA5_dup8076|chr11:14777676-14783773:+|13.054731108778045|0.3480131190219975|5.23|151.0|154|3|sense MSMS UPN47_class_I_Rep_1 2 471.7959289550781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 119.57 1 123.17 122.67 123.67 3.6036 0 0 0 0.40746 1 29716 29716 0.69038 0 1 + 37925 29799 23997 24008 43131 43131 0.1039228863688777 RQRSTGPH 8 Unmodified _RQRSTGPH_ 0 0 0 REV__ENSG00000104356|ENST00000401707|POP1 REV__ENSG00000104356|ENST00000401707|POP1 MSMS UPN46_class_I_Rep_3 1 469.7508850097656 2 469.749382 937.484211 NaN NaN NaN NaN NaN NaN NaN 86.328 1 86.328 85.828 86.828 0 0 0 0 0.40643 1 20638 20638 2.0598 0 1 + 37926 18255 23998 24009 43132 43132 0.0129678390353547 RQRTIGFI 8 Unmodified _RQRTIGFI_ 0 0 0 REV__L1MDa_dup2775|chr7:47339029-47339955:-|2.8125672874537453|0.126772994871181|4.47|150.0|31|3|sense REV__L1MDa_dup2775|chr7:47339029-47339955:-|2.8125672874537453|0.126772994871181|4.47|150.0|31|3|sense MSMS UPN47_class_I_Rep_2 3 495.79638671875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 72.474 1 75.771 75.271 76.271 3.2971 0 0 0 0.40738 1 17767 17767 0.79363 0 1 + 37927 27513 23999 24010 43133 43133 0.08184288636914516 RQRTILLI 8 Unmodified _RQRTILLI_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|196|3|anti-sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|196|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.83453369140625 2 506.834926 1011.6553 0.24316 0.00012324 -0.1916 -9.7111E-05 0.051557 2.6131E-05 506.83474329909467 53.377 1.1642 56.897 56.527 57.691 3.5192 139 84 3 0 0 0 0.82752 1 11402 11402 2.0598 0.21551 1 517840 + 37928 25026 24000 24011 43134 43134 0.14993721222151635 RQRVARFV 8 Unmodified _RQRVARFV_ 0 0 0 REV__L1PA7_dup1973|chr3:14188810-14194405:-|1.001407595561557|0.224901178663809|2.15|150.0|277|2|anti-sense REV__L1PA7_dup1973|chr3:14188810-14194405:-|1.001407595561557|0.224901178663809|2.15|150.0|277|2|anti-sense MSMS UPN46_class_I_Rep_3 1 516.3133544921875 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 102.57 1 102.57 102.07 103.07 0 0 0 0 0.40404 1 25032 25032 5.2307 0 1 + 37929 30037 24001 24012 43135 43135 0.10074799622361752 RQRVCLKK 8 Unmodified _RQRVCLKK_ 0 0 0 AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|8|2|sense AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|8|2|sense AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 516.3099975585938 2 515.818753 1029.62295 NaN NaN NaN NaN NaN NaN NaN 62.761 1 65.93 65.43 66.43 3.1698 0 0 0 0.40746 1 14902 14902 0.69038 0 1 37930 214 24002 24013 43136 43136 0.10932610547479271 RQRVPFSV 8 Unmodified _RQRVPFSV_ 0 0 0 ENST00000553850.1_1_14:50120706-50120958:-|nuORF;ENST00000554377.1_1_14:50116973-50120958:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2 ENST00000553850.1_1_14:50120706-50120958:-|nuORF ENST00000553850.1_1_14:50120706-50120958:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.78753662109375 2 494.787976 987.561398 0.189 9.3514E-05 -1.5237 -0.0007539 -1.3347 -0.00066039 494.7872109926486 48.48 0.5 51.827 51.615 52.115 3.3465 25 22 2 0 0 0 0.82752 1 10518 10518 7.2892 1.0834 1 59670 37931 1509 24003 24014 43137 43137 0.06712002119854787 RQRVPFSV 8 Unmodified _RQRVPFSV_ 0 0 0 ENST00000553850.1_1_14:50120706-50120958:-|nuORF;ENST00000554377.1_1_14:50116973-50120958:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2 ENST00000553850.1_1_14:50120706-50120958:-|nuORF ENST00000553850.1_1_14:50120706-50120958:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.7872619628906 2 494.787976 987.561398 0.18143 8.9769E-05 -1.184 -0.00058584 -1.0026 -0.00049607 494.7873715383605 48.547 0.54129 51.781 51.577 52.118 3.2345 34 26 2 0 0 0 0.82752 1 10596 10596 4.756 0.81161 1 49946 37932 1509 24003 24014 43138 43138 0.06712002119854787 RQRVRKKRS 9 Unmodified _RQRVRKKRS_ 0 0 0 ENST00000553968.1_1_14:80678377-80678506:-|nuORF ENST00000553968.1_1_14:80678377-80678506:-|nuORF ENST00000553968.1_1_14:80678377-80678506:-|nuORF MSMS UPN47_class_I_Rep_1 2 405.2633056640625 3 405.261928 1212.76395 NaN NaN NaN NaN NaN NaN NaN 95.409 1 99.174 98.674 99.674 3.7648 0 0 0 0.40177 1 23685 23685 0.26902 0.1097 1 37933 7416 24004 24015 43139 43139 0.16608325245124433 RQRVRKKRS 9 Unmodified _RQRVRKKRS_ 0 0 0 ENST00000553968.1_1_14:80678377-80678506:-|nuORF ENST00000553968.1_1_14:80678377-80678506:-|nuORF ENST00000553968.1_1_14:80678377-80678506:-|nuORF MSMS UPN48_class_I_Rep_3 7 405.263916015625 3 405.261928 1212.76395 NaN NaN NaN NaN NaN NaN NaN 97.248 1 101.16 100.66 101.66 3.9084 0 0 0 0.40177 1 23052 23052 0.26902 0.1097 1 37934 7416 24004 24015 43140 43140 0.16608325245124433 RQRVRTCVLIL 11 Unmodified _RQRVRTCVLIL_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.948486328125 3 452.946729 1355.81836 0.19283 8.7343E-05 1.6694 0.00075615 1.8622 0.00084349 452.9474370776437 105.44 0.17419 105.44 105.34 105.52 0 31 21 2 0 0 0 0.4411 1 25734 25734 9.2438 0 1 8426500 + 37935 31401 24005 24016 43141 43141 0.15468156281690426 RQRVRTCVLIL 11 Unmodified _RQRVRTCVLIL_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 452.946729 1355.81836 0.19283 8.7343E-05 1.6694 0.00075615 1.8622 0.00084349 452.9474370776437 105.44 0.17419 105.44 105.34 105.52 0 0.15299 -0.0037063 NaN 9.2438 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 8426500 + 37936 31401 24005 24016 0.15468156281690426 RQRVRTCVLIL 11 Unmodified _RQRVRTCVLIL_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 452.946729 1355.81836 0.062763 2.8428E-05 4.3515 0.001971 4.4143 0.0019994 452.9486361667114 101.58 0.65955 105.1 105.01 105.67 3.5151 -0.18523 -6.1773E-05 NaN 9.2438 153 96 3 NaN NaN NaN NaN 0 NaN NaN 0 1188200 + 37937 31401 24005 24016 0.15468156281690426 RQRVRTCVLIL 11 Unmodified _RQRVRTCVLIL_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|172|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 452.946729 1355.81836 -0.14865 -6.7328E-05 4.4429 0.0020124 4.2943 0.0019451 452.94864284743295 102 0.52526 105.48 105.12 105.65 3.4873 0.19999 6.2487E-05 NaN 9.2438 185 82 4 NaN NaN NaN NaN 0 NaN NaN 0 1605400 + 37938 31401 24005 24016 0.15468156281690426 RQSLPQLE 8 Unmodified _RQSLPQLE_ 0 0 0 REV__ENSG00000072134|ENST00000314728|EPN2 REV__ENSG00000072134|ENST00000314728|EPN2 MSMS UPN48_class_I_Rep_2 6 485.7715148925781 2 485.769448 969.524344 NaN NaN NaN NaN NaN NaN NaN 72.785 1 76.349 75.849 76.849 3.5645 0 0 0 0.40625 1 17056 17056 2.3027 0 1 + 37939 17823 24006 24017 43142 43142 0.03836285783438598 RQSPRTWLSR 10 Unmodified _RQSPRTWLSR_ 0 0 0 REV__L1M1_dup866|chr2:71372139-71372730:-|1.9475628548557995|0.2686379178066392|2.86|151.0|3|1|sense REV__L1M1_dup866|chr2:71372139-71372730:-|1.9475628548557995|0.2686379178066392|2.86|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 643.8589477539062 2 643.857452 1285.70035 NaN NaN NaN NaN NaN NaN NaN 62.906 1 62.906 62.406 63.406 0 0 0 0 0.53105 1 14094 14094 5.7319 2.7366 1 + 37940 24160 24007 24018 43143 43143 0.06892920017367032 RQSPRTWLSR 10 Unmodified _RQSPRTWLSR_ 0 0 0 REV__L1M1_dup866|chr2:71372139-71372730:-|1.9475628548557995|0.2686379178066392|2.86|151.0|3|1|sense REV__L1M1_dup866|chr2:71372139-71372730:-|1.9475628548557995|0.2686379178066392|2.86|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 643.8594360351562 2 643.857452 1285.70035 NaN NaN NaN NaN NaN NaN NaN 57.067 1 60.239 59.739 60.739 3.1721 0 0 0 0.53105 1 13161 13161 2.9952 1.5133 1 + 37941 24160 24007 24018 43144 43144 0.06892920017367032 RQSQGPFF 8 Unmodified _RQSQGPFF_ 0 0 0 REV__ENST00000431721.6_1_3:48731584-48731773:-|nuORF REV__ENST00000431721.6_1_3:48731584-48731773:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.7427673339844 2 483.743234 965.471915 -0.34667 -0.0001677 0.52898 0.00025589 0.18231 8.8191E-05 483.74344979977604 20.88 0.2231 24.524 24.484 24.707 3.6436 30 22 2 0 0 0 0.82752 1 2223 2223 0.79363 0 1 56228 + 37942 22295 24008 24019 43145 43145 -0.01220252559517121 RQSQGPFF 8 Unmodified _RQSQGPFF_ 0 0 0 REV__ENST00000431721.6_1_3:48731584-48731773:-|nuORF REV__ENST00000431721.6_1_3:48731584-48731773:-|nuORF MSMS UPN47_class_I_Rep_3 4 483.7431335449219 2 483.743234 965.471915 NaN NaN NaN NaN NaN NaN NaN 21.657 1 25.007 24.507 25.507 3.3496 0 0 0 0.40738 1 2459 2459 0.79363 0 1 + 37943 22295 24008 24019 43146 43146 -0.01220252559517121 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 643.3633422851562 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 21.624 1 21.624 21.124 22.124 0 0 0 0 0.38417 1 2446 2446 2.7352 1.2533 1 37944 8552 24009 24020 43147 43147 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 643.3624877929688 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 54.443 1 54.443 53.943 54.943 0 0 0 0 0.38417 1 11787 11787 2.7352 0.23671 1 37945 8552 24009 24020 43148 43148 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 643.3623046875 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 63.002 1 63.002 62.502 63.502 0 0 0 0 0.38417 1 14122 14122 2.7352 1.2533 1 37946 8552 24009 24020 43149 43149 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 643.362548828125 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 62.179 1 65.547 65.047 66.047 3.3681 0 0 0 0.38417 1 14631 14631 1.0715 0.10919 1 37947 8552 24009 24020 43150 43150 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 643.363037109375 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 62.633 1 65.992 65.492 66.492 3.3595 0 0 0 0.38417 1 14769 14769 2.7352 1.2533 1 37948 8552 24009 24020 43151 43151 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 643.3628540039062 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 18.348 1 21.738 21.238 22.238 3.3898 0 0 0 0.38417 1 1535 1535 1.0715 0.5467 1 37949 8552 24009 24020 43152 43152 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 643.361572265625 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 57.767 1 61.058 60.558 61.558 3.2912 0 0 0 0.38417 1 13324 13324 2.7352 1.2533 1 37950 8552 24009 24020 43153 43153 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 643.8334350585938 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 44.486 1 47.731 47.231 48.231 3.2441 0 0 0 0.38417 1 9334 9334 2.7352 0.23671 1 37951 8552 24009 24020 43154 43154 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 643.2938232421875 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 49.861 1 53.088 52.588 53.588 3.2262 0 0 0 0.38417 1 10965 10965 1.0715 0.5467 1 37952 8552 24009 24020 43155 43155 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 643.362060546875 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 54.556 1 58.07 57.57 58.57 3.5143 0 0 0 0.38417 1 11562 11562 2.7352 1.2533 1 37953 8552 24009 24020 43156 43156 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 643.3623657226562 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 57.482 1 60.976 60.476 61.476 3.4942 0 0 0 0.38417 1 12459 12459 2.7352 0.23671 1 37954 8552 24009 24020 43157 43157 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 643.0325927734375 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 58.338 1 61.825 61.325 62.325 3.487 0 0 0 0.38417 1 12720 12720 2.7352 1.0826 1 37955 8552 24009 24020 43158 43158 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 643.329345703125 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 55.055 1 58.625 58.125 59.125 3.5694 0 0 0 0.38417 1 11635 11635 2.7352 1.2533 1 37956 8552 24009 24020 43159 43159 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 643.364013671875 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 55.104 1 58.662 58.162 59.162 3.5577 0 0 0 0.38417 1 11649 11649 2.7352 1.2533 1 37957 8552 24009 24020 43160 43160 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 643.362060546875 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 82.399 1 86.106 85.606 86.606 3.7066 0 0 0 0.38417 1 19530 19530 2.7352 1.2533 1 37958 8552 24009 24020 43161 43161 0.07750730942507289 RQSRPQGIKCL 11 Unmodified _RQSRPQGIKCL_ 0 0 0 L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense L1M1_dup3329|chr6:38527851-38529581:+|1.0989820869059783|0.017251059159376|5.99|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 643.0602416992188 2 643.361513 1284.70847 NaN NaN NaN NaN NaN NaN NaN 96.076 1 99.984 99.484 100.48 3.9084 0 0 0 0.38417 1 22768 22768 2.7352 1.0826 1 37959 8552 24009 24020 43162 43162 0.07750730942507289 RQSRVWFIKA 10 Unmodified _RQSRVWFIKA_ 0 0 0 REV__L1MB3_dup2397|chr2:161186442-161187145:+|1.943087020044633|0.0738173335915886|4.72|151.0|3|1|sense REV__L1MB3_dup2397|chr2:161186442-161187145:+|1.943087020044633|0.0738173335915886|4.72|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 645.8751831054688 2 645.875114 1289.73567 NaN NaN NaN NaN NaN NaN NaN 67.817 1 67.817 67.317 68.317 0 0 0 0 0.53105 1 15452 15452 1.4819 0 1 + 37960 25863 24010 24021 43163 43163 0.10239582545182202 RQSSIVFF 8 Unmodified _RQSSIVFF_ 0 0 0 REV__ENST00000488049.1_1:206627651-206627753:+|nuORF REV__ENST00000488049.1_1:206627651-206627753:+|nuORF MSMS UPN47_class_I_Rep_2 3 492.2394714355469 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 71.355 1 74.645 74.145 75.145 3.2899 0 0 0 0.40581 1 17434 17434 2.8892 0 1 + 37961 22612 24011 24022 43164 43164 0.031654911343935055 RQSSMQCHR 9 Unmodified _RQSSMQCHR_ 0 0 0 REV__MER20_dup7161|chr8:27448956-27449164:+|3.0991947899632537|0.471244618266235|2.72|150.0|10|1|anti-sense REV__MER20_dup7161|chr8:27448956-27449164:+|3.0991947899632537|0.471244618266235|2.72|150.0|10|1|anti-sense MSMS UPN47_class_I_Rep_1 2 566.75634765625 2 566.758566 1131.50258 NaN NaN NaN NaN NaN NaN NaN 111.39 1 114.96 114.46 115.46 3.572 0 0 0 0.39598 1 27476 27476 1.6526 0 1 + 37962 31159 24012 24023 43165 43165 -0.0579116550843537 RQTEVFTLF 9 Unmodified _RQTEVFTLF_ 0 0 0 ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5 ENSG00000100852|ENST00000345122|ARHGAP5 ENSG00000100852|ENST00000345122|ARHGAP5 MULTI-MSMS UPN48_class_I_Rep_3 7 570.80615234375 2 570.806031 1139.59751 0.50386 0.0002876 -0.35914 -0.000205 0.14472 8.2605E-05 570.8058483672297 65.889 0.79745 69.397 68.989 69.786 3.5077 92 54 2 0 0 0 0.17897 1 14894 14894 22.736 4.5899 1 239990 37963 1534 24013 24024 43166 43166 0.0332941450603812 RQTGIVLNR 9 Unmodified _RQTGIVLNR_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS UPN46_class_I_Rep_3 1 528.8170166015625 2 528.817264 1055.61998 0.057683 3.0504E-05 -0.25379 -0.00013421 -0.19611 -0.0001037 528.8170271950182 29.263 0.75556 29.263 28.933 29.689 0 113 66 2 0 0 0 0.24411 1 4651 4651 17.443 0.50035 1 121160 37964 1300 24014 24025 43167 43167 0.09439058694306368 RQTSPCIY 8 Unmodified _RQTSPCIY_ 0 0 0 REV__L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|55|3|sense REV__L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 484.23614501953125 2 484.236927 966.459301 NaN NaN NaN NaN NaN NaN NaN 80.068 1 83.617 83.117 84.117 3.5487 0 0 0 0.40625 1 19116 19116 2.3027 0 1 + 37965 28494 24015 24026 43168 43168 -0.025270320140975855 RQTSPCIY 8 Unmodified _RQTSPCIY_ 0 0 0 REV__L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|55|3|sense REV__L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 484.2371520996094 2 484.236927 966.459301 NaN NaN NaN NaN NaN NaN NaN 80.817 1 84.379 83.879 84.879 3.5624 0 0 0 0.40625 1 19261 19261 2.3027 0 1 + 37966 28494 24015 24026 43169 43169 -0.025270320140975855 RQTTYEFY 8 Unmodified _RQTTYEFY_ 0 0 0 REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF REV__ENST00000603680.5_1_12:51748165-51753149:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 554.2587890625 2 554.258914 1106.50327 0.40592 0.00022498 -0.36508 -0.00020235 0.040839 2.2635E-05 554.2587042424884 62.618 0.60669 65.787 65.533 66.14 3.1698 58 33 2 0 0 0 0.82752 1 14826 14826 5.7604 1.4312 1 151770 + 37967 19316 24016 24027 43170 43170 -0.04571724316087966 RQTWMYEF 8 Unmodified _RQTWMYEF_ 0 0 0 REV__L1PA15_dup2385|chr5:18711023-18712160:+|1.0290215196440593|0.0175900987550913|5.87|148.0|39|3|sense REV__L1PA15_dup2385|chr5:18711023-18712160:+|1.0290215196440593|0.0175900987550913|5.87|148.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 580.7636108398438 2 580.763309 1159.51206 NaN NaN NaN NaN NaN NaN NaN 112.81 1 116.46 115.96 116.96 3.6568 0 0 0 0.40643 1 26810 26810 2.0598 0.21551 1 + 37968 29212 24017 24028 43171 43171 -0.061310739512691725 RQTWRQKI 8 Unmodified _RQTWRQKI_ 0 0 0 L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|18|2|sense L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|18|2|sense L1MB7_dup1904|chr2:24235674-24236507:+|1.190941174902331|0.0174672782350995|6.09|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 558.3248901367188 2 558.325257 1114.63596 NaN NaN NaN NaN NaN NaN NaN 91.306 1 94.707 94.207 95.207 3.401 0 0 0 0.40746 1 22842 22842 0.69038 0 1 37969 10765 24018 24029 43172 43172 0.08322764931222082 RQTYLWFC 8 Unmodified _RQTYLWFC_ 0 0 0 REV__L1MA9_dup1188|chr2:24527093-24528341:-|3.4607184918291645|0.0632237304971052|5.77|151.0|4|1|sense REV__L1MA9_dup1188|chr2:24527093-24528341:-|3.4607184918291645|0.0632237304971052|5.77|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 558.7689208984375 2 558.768394 1115.52224 NaN NaN NaN NaN NaN NaN NaN 22.644 1 26.348 25.848 26.848 3.7042 0 0 0 0.40738 1 2667 2667 0.79363 0 1 + 37970 25597 24019 24030 43173 43173 -0.0309046622603546 RQVIIKKK 8 Unmodified _RQVIIKKK_ 0 0 0 ENSG00000164294|ENST00000503787|GPX8 ENSG00000164294|ENST00000503787|GPX8 ENSG00000164294|ENST00000503787|GPX8 MSMS UPN48_class_I_Rep_3 7 506.8529357910156 2 506.853119 1011.69168 NaN NaN NaN NaN NaN NaN NaN 109.63 1 113.3 112.8 113.8 3.67 0 0 0 0.40625 1 26042 26042 2.3027 0 1 37971 4101 24020 24031 43174 43174 0.18630598118841135 RQVKRKWLWVF 11 Unmodified _RQVKRKWLWVF_ 0 0 0 ENST00000446176.6_1_9:132650909-132651179:-|nuORF ENST00000446176.6_1_9:132650909-132651179:-|nuORF ENST00000446176.6_1_9:132650909-132651179:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 516.3129272460938 3 515.977017 1544.90922 0.32356 0.00016695 2.3089 0.0011914 2.6325 0.0013583 515.9778176555077 106.85 0.067505 106.85 106.83 106.89 0 11 7 2 0 0 0 0.68478 1 26068 26068 0.094841 0 1 380510 37972 6789 24021 24032 43175 43175 0.1585636832144246 RQVKRKWLWVF 11 Unmodified _RQVKRKWLWVF_ 0 0 0 ENST00000446176.6_1_9:132650909-132651179:-|nuORF ENST00000446176.6_1_9:132650909-132651179:-|nuORF ENST00000446176.6_1_9:132650909-132651179:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 515.977017 1544.90922 0.34454 0.00017777 3.1648 0.0016329 3.5093 0.0018107 516.3135760240934 102.9 0.080429 106.61 106.58 106.66 3.7108 -0.084403 0.0011578 NaN 0.094841 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 110900 37973 6789 24021 24032 0.1585636832144246 RQVPTRKN 8 Unmodified _RQVPTRKN_ 0 0 0 REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 499.7965087890625 2 499.796332 997.578111 -0.0035578 -1.7782E-06 0.10546 5.2709E-05 0.1019 5.0931E-05 499.7961403374363 27.592 0.82537 27.592 27.235 28.06 0 99 64 2 0 0 0 0.82752 1 4175 4175 3.9444 3.9444 1 91897 + 37974 17878 24022 24033 43176 43176 0.07922503005806902 RQVRLSLV 8 Unmodified _RQVRLSLV_ 0 0 0 REV__THE1B-int_dup3349|chr12:62512152-62513243:-|2.02776628484909|0.1167123729379023|4.12|151.0|9|2|sense REV__THE1B-int_dup3349|chr12:62512152-62513243:-|2.02776628484909|0.1167123729379023|4.12|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 74.082 1 77.569 77.069 78.069 3.4866 0 0 0 0.40746 1 17492 17492 0.69038 0 1 + 37975 32265 24023 24034 43177 43177 0.12232861671009232 RQVTPLRS 8 Unmodified _RQVTPLRS_ 0 0 0 MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|3|1|sense MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|3|1|sense MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.7856140136719 2 478.785433 955.556313 0.10449 5.003E-05 0.036409 1.7432E-05 0.1409 6.7462E-05 478.78538752924936 83.314 0.61004 86.664 86.411 87.021 3.35 122 68 2 0 0 0 0.82752 1 20959 20959 2.5775 0 1 167770 37976 15944 24024 24035 43178 43178 0.07675698257241947 RQVVRLSI 8 Unmodified _RQVVRLSI_ 0 0 0 MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|158|1|anti-sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|158|1|anti-sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|158|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8116760253906 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.571 1 76.875 76.375 77.375 3.3048 0 0 0 0.40625 1 18097 18097 2.3027 0 1 37977 15966 24025 24036 43179 43179 0.12232861670997863 RQWKKIFKV 9 Unmodified _RQWKKIFKV_ 0 0 0 L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|31|2|sense L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|31|2|sense L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 616.886474609375 2 616.88495 1231.75535 NaN NaN NaN NaN NaN NaN NaN 68.094 1 71.546 71.046 72.046 3.4517 0 0 0 0.4007 1 15702 15702 0.52476 0.066424 1 37978 13258 24026 24037 43180 43180 0.14873958555926947 RQWKLKHKKLE 11 Unmodified _RQWKLKHKKLE_ 0 0 0 nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 nc|ENSG00000100629|Q6ZU80-1|CEP128 MSMS UPN48_class_I_Rep_3 7 498.64141845703125 3 498.640294 1492.89905 NaN NaN NaN NaN NaN NaN NaN 56.207 1 59.75 59.25 60.25 3.5427 0 0 0 0.38417 1 11985 11985 0.45452 0.046251 1 37979 1524 24027 24038 43181 43181 0.17231760596223467 RQWLPADEL 9 Unmodified _RQWLPADEL_ 0 0 0 REV__ENSG00000143178|ENST00000367821|TBX19 REV__ENSG00000143178|ENST00000367821|TBX19 MSMS UPN48_class_I_Rep_1 5 564.2964477539062 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 36.925 1 40.432 39.932 40.932 3.507 0 0 0 0.39518 1 6220 6220 1.8442 0 1 + 37980 19429 24028 24039 43182 43182 0.018882438462242135 RQWQRGFY 8 Unmodified _RQWQRGFY_ 0 0 0 L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|329|3|anti-sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|329|3|anti-sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|329|3|anti-sense MSMS UPN47_class_I_Rep_1 2 570.791015625 2 570.788507 1139.56246 NaN NaN NaN NaN NaN NaN NaN 67.018 1 70.379 69.879 70.879 3.3611 0 0 0 0.40604 1 16090 16090 2.5775 0.27475 1 37981 13722 24029 24040 43183 43183 -0.0017378351124079927 RQYAKDIGF 9 Unmodified _RQYAKDIGF_ 0 0 0 ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF ENST00000401543.2_1_9:90140306-90140387:+|nuORF ENST00000401543.2_1_9:90140306-90140387:+|nuORF MSMS UPN48_class_I_Rep_1 5 549.2907104492188 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 35.602 1 39.112 38.612 39.612 3.5101 0 0 0 0.38784 1 5843 5843 3.5965 1.2938 1 37982 5601 24030 24041 43184 43184 0.022122611917893664 RQYIQLEL 8 Unmodified _RQYIQLEL_ 0 0 0 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 MSMS UPN48_class_I_Rep_2 6 531.8003540039062 2 531.800749 1061.58694 NaN NaN NaN NaN NaN NaN NaN 63.44 1 66.914 66.414 67.414 3.4738 0 0 0 0.35715 1 14263 14263 20.454 1.1966 1 37983 5053 24031 24042 43185 43185 0.058614318515992636 RQYRKKCA 8 Unmodified _RQYRKKCA_ 0 0 0 nc|ENSG00000018610|Q9H5V9-2|STEEP1;ENSG00000018610|ENST00000644802|STEEP1 nc|ENSG00000018610|Q9H5V9-2|STEEP1 nc|ENSG00000018610|Q9H5V9-2|STEEP1 MSMS UPN47_class_I_Rep_3 4 526.822998046875 2 526.792735 1051.57092 NaN NaN NaN NaN NaN NaN NaN 13.946 1 17.316 16.816 17.816 3.3697 0 0 0 0.40738 1 431 431 0.79363 0 1 37984 802 24032 24043 43186 43186 0.04719447133720678 RRAAGVQF 8 Unmodified _RRAAGVQF_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|281|1|anti-sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|281|1|anti-sense MSMS UPN46_class_I_Rep_3 1 452.7712707519531 2 452.759218 903.503883 NaN NaN NaN NaN NaN NaN NaN 30.741 1 30.741 30.241 31.241 0 0 0 0 0.39819 1 5049 5049 8.5933 3.3626 1 + 37985 23579 24033 24044 43187 43187 0.0482715991428222 RRAAGVQF 8 Unmodified _RRAAGVQF_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|281|1|anti-sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|281|1|anti-sense MSMS UPN46_class_I_Rep_3 1 452.7579345703125 2 452.759218 903.503883 NaN NaN NaN NaN NaN NaN NaN 87.175 1 87.175 86.675 87.675 0 0 0 0 0.40746 1 20873 20873 0.69038 0 1 + 37986 23579 24033 24044 43188 43188 0.0482715991428222 RRAAKTVA 8 Unmodified _RRAAKTVA_ 0 0 0 nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ENST00000530999.1_1_1:32193023-32200902:-|nuORF;ENST00000465256.5_1_1:32193589-32201220:-|nuORF nc|ENSG00000121753|O60241-4|ADGRB2 nc|ENSG00000121753|O60241-4|ADGRB2 MSMS UPN48_class_I_Rep_1 5 436.7745361328125 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 93.357 1 96.981 96.481 97.481 3.624 0 0 0 0.40625 1 22437 22437 2.3027 0 1 37987 2364 24034 24045 43189 43189 0.0942773294835888 RRAAKTVA 8 Unmodified _RRAAKTVA_ 0 0 0 nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ENST00000530999.1_1_1:32193023-32200902:-|nuORF;ENST00000465256.5_1_1:32193589-32201220:-|nuORF nc|ENSG00000121753|O60241-4|ADGRB2 nc|ENSG00000121753|O60241-4|ADGRB2 MSMS UPN48_class_I_Rep_1 5 436.77490234375 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 93.386 1 97.01 96.51 97.51 3.624 0 0 0 0.40625 1 22445 22445 2.3027 0 1 37988 2364 24034 24045 43190 43190 0.0942773294835888 RRAAKTVA 8 Unmodified _RRAAKTVA_ 0 0 0 nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2;ENST00000530999.1_1_1:32193023-32200902:-|nuORF;ENST00000465256.5_1_1:32193589-32201220:-|nuORF nc|ENSG00000121753|O60241-4|ADGRB2 nc|ENSG00000121753|O60241-4|ADGRB2 MSMS UPN48_class_I_Rep_1 5 436.7751159667969 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 93.515 1 97.136 96.636 97.636 3.6208 0 0 0 0.40625 1 22476 22476 2.3027 0 1 37989 2364 24034 24045 43191 43191 0.0942773294835888 RRAALHLRRLR 11 Unmodified _RRAALHLRRLR_ 0 0 0 ENST00000262525.5_1_16:30794287-30794599:-|nuORF ENST00000262525.5_1_16:30794287-30794599:-|nuORF ENST00000262525.5_1_16:30794287-30794599:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 472.9710693359375 3 473.30776 1416.90145 0.16609 7.8611E-05 -3.1422 -0.0014872 -2.9761 -0.0014086 473.3061643947367 55.524 0.099602 55.524 55.488 55.587 0 20 13 2 0 0 0 22.551 1 12072 12072 0.40827 0.078994 1 300040 37990 5972 24035 24046 43192 43192 0.2096765384453647 RRAAPLPQ 8 Unmodified _RRAAPLPQ_ 0 0 0 REV__ENST00000558265.5_2_14:103800768-103802173:+|nuORF REV__ENST00000558265.5_2_14:103800768-103802173:+|nuORF MSMS UPN47_class_I_Rep_1 2 454.77301025390625 2 454.774868 907.535184 NaN NaN NaN NaN NaN NaN NaN 28.287 1 32.053 31.553 32.553 3.7662 0 0 0 0.40746 1 4335 4335 0.69038 0 1 + 37991 23003 24036 24047 43193 43193 0.07771732948356203 RRADGVVP 8 Unmodified _RRADGVVP_ 0 0 0 MLT2B4_dup4366|chr22:18105760-18107412:-|1.396050582367233|0.1017256252292089|3.78|151.0|97|3|anti-sense;MLT2B4_dup4366|chr22:18105760-18107412:-|1.396050582367233|0.1017256252292089|3.78|151.0|74|2|anti-sense;MLT2B4_dup4366|chr22:18105760-18107412:-|1.396050582367233|0.1017256252292089|3.78|151.0|33|1|anti-sense;MLT2B4_dup4366|chr22:18105760-18107412:-|1.396050582367233|0.1017256252292089|3.78|151.0|30|1|anti-sense MLT2B4_dup4366|chr22:18105760-18107412:-|1.396050582367233|0.1017256252292089|3.78|151.0|97|3|anti-sense MLT2B4_dup4366|chr22:18105760-18107412:-|1.396050582367233|0.1017256252292089|3.78|151.0|97|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 435.25091552734375 2 435.251226 868.487899 0.096761 4.2115E-05 -0.58615 -0.00025512 -0.48939 -0.00021301 435.2507806894506 70.266 1.3953 73.802 72.938 74.333 3.5359 222 129 3 0 0 0 0.82752 1 16333 16333 2.0598 0.21551 1 183420 37992 16513 24037 24048 43194 43194 0.04839453677379879 RRAFARQL 8 Unmodified _RRAFARQL_ 0 0 0 ENSG00000104848|ENST00000221444|KCNA7 ENSG00000104848|ENST00000221444|KCNA7 ENSG00000104848|ENST00000221444|KCNA7 MSMS UPN48_class_I_Rep_3 7 509.3060302734375 2 509.306867 1016.59918 NaN NaN NaN NaN NaN NaN NaN 84.021 1 87.749 87.249 88.249 3.7281 0 0 0 0.4044 1 19933 19933 4.756 0 1 37993 1707 24038 24049 43195 43195 0.09154513105306705 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2483825683594 2 406.248486 810.48242 0.064072 2.6029E-05 -0.28358 -0.0001152 -0.21951 -8.9174E-05 406.2482563847869 87.39 0.076332 87.39 87.326 87.402 0 11 8 2 0 0 0 0.82752 1 20925 20925 0 0 1 117030 + 37994 21624 24039 24050 43196 43196 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.24871826171875 2 406.248486 810.48242 0.064092 2.6037E-05 -0.31143 -0.00012652 -0.24734 -0.00010048 406.248336625911 87.541 0.18494 87.541 87.402 87.587 0 23 15 2 0 0 0 0.82752 1 20974 20974 0 0 1 199280 + 37995 21624 24039 24050 43197 43197 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 406.24810791015625 2 406.248486 810.48242 0.031207 1.2678E-05 -0.30818 -0.0001252 -0.27697 -0.00011252 406.2482849293035 83.652 0.046051 87.217 87.189 87.236 3.5655 6 5 2 0 0 0 0.72333 1 20930 20930 0 0 1 42224 + 37996 21624 24039 24050 43198 43198 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 406.248486 810.48242 0.064072 2.6029E-05 -0.28358 -0.0001152 -0.21951 -8.9174E-05 406.2482563847869 87.39 0.076332 87.39 87.326 87.402 0 0.025014 -2.1426E-05 NaN 0 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 117030 + 37997 21624 24039 24050 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 406.248486 810.48242 0.064092 2.6037E-05 -0.31143 -0.00012652 -0.24734 -0.00010048 406.248336625911 87.541 0.18494 87.541 87.402 87.587 0 -0.12648 -0.00027129 NaN 0 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 199280 + 37998 21624 24039 24050 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 406.248486 810.48242 -0.63534 -0.00025811 2.5262 0.0010263 1.8908 0.00076815 406.24953208455855 84.543 0.046913 87.904 87.879 87.925 3.3615 0.23627 0.0020343 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 92716 + 37999 21624 24039 24050 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 406.248486 810.48242 0.12416 5.0438E-05 0.11863 4.8195E-05 0.24279 9.8634E-05 406.2488749360804 83.759 0.083984 87.487 87.416 87.5 3.7281 0.12235 0.00030537 NaN 0 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 44504 + 38000 21624 24039 24050 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 406.248486 810.48242 0.12398 5.0368E-05 0.032734 1.3298E-05 0.15672 6.3666E-05 406.2485937739547 83.83 0.064995 87.558 87.5 87.565 3.7281 -0.10979 8.3425E-06 NaN 0 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 87457 + 38001 21624 24039 24050 0.06959774885535808 RRAGPPTP 8 Unmodified _RRAGPPTP_ 0 0 0 ENSG00000225556|ENST00000694868|C2CD4D ENSG00000225556|ENST00000694868|C2CD4D ENSG00000225556|ENST00000694868|C2CD4D MULTI-MSMS UPN48_class_I_Rep_3 7 426.245849609375 2 426.245944 850.477334 0.15118 6.4439E-05 -0.089679 -3.8226E-05 0.061499 2.6214E-05 426.24586441055254 82.389 1.759 86.096 85.505 87.264 3.7066 336 227 2 0 0 0 0.82752 1 19689 19689 0.69038 0 1 341790 38002 5659 24040 24051 43199 43199 0.04611471022928981 RRAGPTAL 8 Unmodified _RRAGPTAL_ 0 0 0 nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1 nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-2|MTX1 MULTI-MSMS UPN46_class_I_Rep_3 1 421.2526550292969 2 421.253769 840.492984 0.081884 3.4494E-05 -0.88629 -0.00037335 -0.80441 -0.00033886 421.2532925660473 79.628 0.17508 79.628 79.572 79.747 0 17 14 2 0 0 0 0.82752 1 18724 18724 0 0 1 54363 38003 4614 24041 24052 43200 43200 0.06635757539959286 RRAGPTAL 8 Unmodified _RRAGPTAL_ 0 0 0 nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1 nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-2|MTX1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 421.253769 840.492984 0.001316 5.5435E-07 -0.33375 -0.0001406 -0.33244 -0.00014004 421.2534265172433 76.447 0.11149 79.862 79.825 79.936 3.4149 0.11724 0.00029187 NaN 0 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 42410 38004 4614 24041 24052 0.06635757539959286 RRAKHLKKKKK 11 Unmodified _RRAKHLKKKKK_ 0 0 0 AluSq2_dup55532|chr19:16644119-16644409:-|1.360485839958725|0.4201290823642067|1.7|151.0|4|1|sense AluSq2_dup55532|chr19:16644119-16644409:-|1.360485839958725|0.4201290823642067|1.7|151.0|4|1|sense AluSq2_dup55532|chr19:16644119-16644409:-|1.360485839958725|0.4201290823642067|1.7|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 474.2825622558594 3 474.328161 1419.96265 NaN NaN NaN NaN NaN NaN NaN 71.97 1 71.97 71.47 72.47 0 0 0 0 0.38417 1 16609 16609 0 0 1 38005 268 24042 24053 43201 43201 0.26947165823935393 RRALAAAF 8 Unmodified _RRALAAAF_ 0 0 0 ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B ENSG00000189409|ENST00000356026|MMP23B ENSG00000189409|ENST00000356026|MMP23B MSMS UPN48_class_I_Rep_2 6 438.2432556152344 2 438.264136 874.51372 NaN NaN NaN NaN NaN NaN NaN 46.672 1 50.421 49.921 50.921 3.7494 0 0 0 0.40604 1 9147 9147 2.5775 0 1 38006 5277 24043 24054 43202 43202 0.07144347919643224 RRALEKIGSF 10 Unmodified _RRALEKIGSF_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MSMS UPN46_class_I_Rep_3 1 589.1207885742188 2 588.846022 1175.67749 NaN NaN NaN NaN NaN NaN NaN 60.769 1 60.769 60.269 61.269 0 0 0 0 0.53105 1 13495 13495 8.1555 0 1 + 38007 18182 24044 24055 43203 43203 0.09667900899898996 RRALFRYLKVL 11 Unmodified _RRALFRYLKVL_ 0 0 0 REV__ENST00000552705.5_1_19:49119841-49122400:-|nuORF REV__ENST00000552705.5_1_19:49119841-49122400:-|nuORF MSMS UPN48_class_I_Rep_1 5 478.9743957519531 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 46.775 1 50.294 49.794 50.794 3.5192 0 0 0 0.38417 1 9171 9171 0.094841 0 1 + 38008 17730 24045 24056 43204 43204 0.19872965947138255 RRALQAGQ 8 Unmodified _RRALQAGQ_ 0 0 0 ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF ENSG00000123143|ENST00000242783|PKN1 ENSG00000123143|ENST00000242783|PKN1 MULTI-SECPEP UPN46_class_I_Rep_3 1 449.76031494140625 2 450.262125 898.509697 0.18523 8.3404E-05 0.14561 6.5563E-05 0.33085 0.00014897 450.2622345825531 109.12 0.33925 109.12 108.82 109.16 0 22 18 2 0 0 0 0.72333 1 26762 26762 5.2307 0 1 2212800 38009 2409 24046 24057 43205 43205 0.05638258425949516 RRALVWPE 8 Unmodified _RRALVWPE_ 0 0 0 REV__ENSG00000170525.21,PFKFB3,chr10,+,I1.1,6145014,6146315|27|8.09|1|intron REV__ENSG00000170525.21,PFKFB3,chr10,+,I1.1,6145014,6146315|27|8.09|1|intron MSMS UPN47_class_I_Rep_2 3 513.8067016601562 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 90.01 1 93.468 92.968 93.968 3.4571 0 0 0 0.40746 1 22347 22347 0.69038 0 1 + 38010 20367 24047 24058 43206 43206 0.0652828863690047 RRANLRFV 8 Unmodified _RRANLRFV_ 0 0 0 LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.3134765625 2 516.314692 1030.61483 0.37025 0.00019117 -1.5347 -0.00079237 -1.1644 -0.00060121 516.313710530404 91.164 0.1738 94.869 94.802 94.975 3.7053 39 23 2 0 0 0 0.82752 1 22777 22777 0.69038 0 1 142600 38011 15532 24048 24059 43207 43207 0.10074799622339015 RRANLRFV 8 Unmodified _RRANLRFV_ 0 0 0 LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.3138427734375 2 516.314692 1030.61483 0.33836 0.0001747 -1.1427 -0.00059 -0.80436 -0.0004153 516.313919452404 91.061 0.33835 94.462 94.282 94.62 3.401 64 45 2 0 0 0 0.82752 1 22803 22803 0.69038 0 1 120620 38012 15532 24048 24059 43208 43208 0.10074799622339015 RRANLRFV 8 Unmodified _RRANLRFV_ 0 0 0 LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 516.3140258789062 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 93.732 1 97.502 97.002 98.002 3.77 0 0 0 0.40746 1 22287 22287 0.69038 0 1 38013 15532 24048 24059 43209 43209 0.10074799622339015 RRANLRFV 8 Unmodified _RRANLRFV_ 0 0 0 LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 516.31494140625 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 94.118 1 97.894 97.394 98.394 3.7761 0 0 0 0.40746 1 22381 22381 0.69038 0 1 38014 15532 24048 24059 43210 43210 0.10074799622339015 RRANLRFV 8 Unmodified _RRANLRFV_ 0 0 0 LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense LTR12C_dup1086|chr6:17975319-17976749:-|1.3166689423422415|0.0356861094695512|5.21|150.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 516.314453125 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 94.311 1 98.087 97.587 98.587 3.7761 0 0 0 0.40746 1 22423 22423 0.69038 0 1 38015 15532 24048 24059 43211 43211 0.10074799622339015 RRAPHQVV 8 Unmodified _RRAPHQVV_ 0 0 0 REV__ENST00000371471.6_1_20:52192268-52192298:-|nuORF REV__ENST00000371471.6_1_20:52192268-52192298:-|nuORF MSMS UPN46_class_I_Rep_3 1 482.26385498046875 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 118.45 1 118.45 117.95 118.95 0 0 0 0 0.40746 1 29402 29402 0.69038 0.088878 1 + 38016 21963 24049 24060 43212 43212 0.07466537696939213 RRATPGHIIV 10 Unmodified _RRATPGHIIV_ 0 0 0 L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense;L1PA3_dup6116|chr9:125010049-125016177:+|2.21534687376662|0.0886593728627493|4.64|151.0|16|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|16|1|sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.3409423828125 2 560.340907 1118.66726 0.45342 0.00025407 -0.51303 -0.00028747 -0.059605 -3.3399E-05 560.3405680673864 95.237 0.10136 98.853 98.794 98.896 3.6167 16 10 2 0 0 0 0.56281 1 22942 22942 1.8442 0.36234 1 83772 38017 14296 24050 24061 43213 43213 0.11267337965296065 RRATPGHIIV 10 Unmodified _RRATPGHIIV_ 0 0 0 L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense;L1PA3_dup6116|chr9:125010049-125016177:+|2.21534687376662|0.0886593728627493|4.64|151.0|16|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|16|1|sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|83|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.340907 1118.66726 0.49458 0.00027714 -1.4703 -0.00082389 -0.97575 -0.00054675 560.3399997478421 94.956 0.11074 98.737 98.685 98.796 3.7804 -0.13218 -0.00010708 NaN 1.8442 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 61720 38018 14296 24050 24061 0.11267337965296065 RRAVKFYL 8 Unmodified _RRAVKFYL_ 0 0 0 REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|59|3|sense REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 526.8221435546875 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 44.007 1 44.007 43.507 44.507 0 0 0 0 0.40738 1 8832 8832 0.79363 0 1 + 38019 25331 24051 24062 43214 43214 0.10533452050663072 RRAWWILVPA 10 Unmodified _RRAWWILVPA_ 0 0 0 nc|ENSG00000056291|Q9Y5X5|NPFFR2;nc|ENSG00000056291|Q9Y5X5-4|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 nc|ENSG00000056291|Q9Y5X5|NPFFR2 MSMS UPN48_class_I_Rep_3 7 634.37646484375 2 634.374749 1266.73495 NaN NaN NaN NaN NaN NaN NaN 105.97 1 109.67 109.17 110.17 3.702 0 0 0 0.53105 1 25000 25000 1.8442 0.19162 1 38020 16625 24052 24063 43215 43215 0.1122478789611705 RRCIKVERPV 10 Unmodified _RRCIKVERPV_ 0 0 0 REV__ENST00000442516.1_1_7:76099682-76109791:+|nuORF REV__ENST00000442516.1_1_7:76099682-76109791:+|nuORF MSMS UPN46_class_I_Rep_3 1 628.3746948242188 2 628.374423 1254.73429 NaN NaN NaN NaN NaN NaN NaN 44.755 1 44.755 44.255 45.255 0 0 0 0 0.53105 1 9042 9042 0.40072 0 1 + 38021 22338 24053 24064 43216 43216 0.11711625184761942 RRCRKRQC 8 Unmodified _RRCRKRQC_ 0 0 0 REV__ENST00000569380.5_1_16:1827100-1828231:-|nuORF REV__ENST00000569380.5_1_16:1827100-1828231:-|nuORF MSMS UPN46_class_I_Rep_3 1 553.0695190429688 2 553.300736 1104.58692 NaN NaN NaN NaN NaN NaN NaN 81.102 1 81.102 80.602 81.602 0 0 0 0 0.40746 1 19136 19136 0.69038 0.088878 1 + 38022 19916 24054 24065 43217 43217 0.038808300989785494 RRCTTLLL 8 Unmodified _RRCTTLLL_ 0 0 0 REV__ENSG00000137106|ENST00000318158|GRHPR REV__ENSG00000137106|ENST00000318158|GRHPR MULTI-SECPEP UPN48_class_I_Rep_1 5 487.7921447753906 2 488.292037 974.56952 0.18227 8.8999E-05 1.694 0.00082714 1.8762 0.00091614 488.2929741293241 75.095 0.20253 78.585 78.479 78.682 3.49 36 22 2 0 0 0 0.72333 1 17756 17756 5.7604 0.52976 1 101430 + 38023 19214 24055 24066 43218 43218 0.0812181304496562 RRCTTLLL 8 Unmodified _RRCTTLLL_ 0 0 0 REV__ENSG00000137106|ENST00000318158|GRHPR REV__ENSG00000137106|ENST00000318158|GRHPR MULTI-MATCH UPN47_class_I_Rep_2 3 2 488.292037 974.56952 0.27672 0.00013512 0.46316 0.00022616 0.73987 0.00036128 488.29223799930395 75.154 0.22173 78.466 78.38 78.602 3.3127 -0.096778 -0.00047097 NaN 5.7604 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 103060 + 38024 19214 24055 24066 0.0812181304496562 RRDGKLLL 8 Unmodified _RRDGKLLL_ 0 0 0 ENSG00000173376|ENST00000379692|NDNF ENSG00000173376|ENST00000379692|NDNF ENSG00000173376|ENST00000379692|NDNF MSMS UPN47_class_I_Rep_3 4 485.8111877441406 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 93.465 1 96.87 96.37 97.37 3.4052 0 0 0 0.40746 1 23298 23298 0.69038 0 1 38025 4623 24056 24067 43219 43219 0.12232861670997863 RRDNSKQGWG 10 Unmodified _RRDNSKQGWG_ 0 0 0 MER4E1_dup848|chr15:32557333-32558108:-|1.3524188318174972|0.0550173657953245|4.62|151.0|50|3|anti-sense MER4E1_dup848|chr15:32557333-32558108:-|1.3524188318174972|0.0550173657953245|4.62|151.0|50|3|anti-sense MER4E1_dup848|chr15:32557333-32558108:-|1.3524188318174972|0.0550173657953245|4.62|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_1 2 602.3043823242188 2 602.30251 1202.59047 NaN NaN NaN NaN NaN NaN NaN 66.189 1 69.546 69.046 70.046 3.3576 0 0 0 0.53105 1 15839 15839 6.2058 0.47393 1 38026 16049 24057 24068 43220 43220 -0.002725053218227913 RRDPPPPQ 8 Unmodified _RRDPPPPQ_ 0 0 0 REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2 REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2 MSMS UPN48_class_I_Rep_1 5 481.76348876953125 2 481.761958 961.509363 NaN NaN NaN NaN NaN NaN NaN 70.965 1 74.431 73.931 74.931 3.466 0 0 0 0.40604 1 16563 16563 2.5775 0 1 + 38027 17964 24058 24069 43221 43221 0.027068387060808163 RRDPPPPQ 8 Unmodified _RRDPPPPQ_ 0 0 0 REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2 REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2 MSMS UPN48_class_I_Rep_1 5 481.76361083984375 2 481.761958 961.509363 NaN NaN NaN NaN NaN NaN NaN 70.997 1 74.463 73.963 74.963 3.466 0 0 0 0.40604 1 16572 16572 2.5775 0 1 + 38028 17964 24058 24069 43222 43222 0.027068387060808163 RRDPVWKLLC 10 Unmodified _RRDPVWKLLC_ 0 0 0 REV__L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|68|2|sense REV__L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 643.3623046875 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 59.383 1 62.863 62.363 63.363 3.4801 0 0 0 0.53105 1 13043 13043 3.2813 0 1 + 38029 30015 24059 24070 43223 43223 0.08152820436203001 RRDRGPCACV 10 Unmodified _RRDRGPCACV_ 0 0 0 REV__nc|ENSG00000141510|P04637-8|TP53 REV__nc|ENSG00000141510|P04637-8|TP53 MSMS UPN48_class_I_Rep_1 5 566.778076171875 2 566.776759 1131.53897 NaN NaN NaN NaN NaN NaN NaN 26.235 1 29.802 29.302 30.302 3.5667 0 0 0 0.53105 1 3188 3188 1.8442 0 1 + 38030 19380 24060 24071 43224 43224 -0.021542886117458693 RRDRVFPW 8 Unmodified _RRDRVFPW_ 0 0 0 LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|20|2|anti-sense LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|20|2|anti-sense LTR1A2_dup466|chrX:73963552-73964041:-|1.5878632855078605|0.0669472535246574|4.57|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_3 7 566.3115234375 2 566.312149 1130.60975 NaN NaN NaN NaN NaN NaN NaN 36.18 1 39.846 39.346 40.346 3.6667 0 0 0 0.40738 1 5957 5957 0.79363 0 1 38031 15587 24061 24072 43225 43225 0.049664957597542525 RRDRVVRLTP 10 Unmodified _RRDRVVRLTP_ 0 0 0 ENST00000268182.9_1_15:90991945-90996021:+|nuORF ENST00000268182.9_1_15:90991945-90996021:+|nuORF ENST00000268182.9_1_15:90991945-90996021:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 422.5924377441406 3 423.261705 1266.76329 0.026333 1.1146E-05 0.51198 0.0002167 0.53831 0.00022785 423.26215181049287 48.403 0.13842 52.037 51.998 52.136 3.6339 18 10 2 0 0 0 0.84575 1 9608 9608 2.6312 0.54727 1 118650 38032 6005 24062 24073 43226 43226 0.1405748580539239 RRDTLENR 8 Unmodified _RRDTLENR_ 0 0 0 REV__ENSG00000181744|ENST00000315691|DIPK2A REV__ENSG00000181744|ENST00000315691|DIPK2A MULTI-MSMS UPN46_class_I_Rep_3 1 530.2860717773438 2 530.286328 1058.5581 -0.2695 -0.00014291 0.017999 9.5445E-06 -0.2515 -0.00013337 530.2863320290968 12.808 0.40112 12.808 12.731 13.132 0 71 36 4 0 0 0 0.82752 1 207 207 19.257 5.3509 1 248100 + 38033 20737 24063 24074 43227 43227 0.03116707275171393 RREATLLPA 9 Unmodified _RREATLLPA_ 0 0 0 ENST00000486758.5_1_4:77631429-77663226:+|nuORF;ENSG00000138771|ENST00000296043|SHROOM3 ENST00000486758.5_1_4:77631429-77663226:+|nuORF ENST00000486758.5_1_4:77631429-77663226:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.8070068359375 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 60.766 1 64.032 63.532 64.532 3.2654 0 0 0 0.38639 1 14239 14239 3.9444 0 1 38034 3112 24064 24075 43228 43228 0.08640253945782206 RRECRGRR 8 Unmodified _RRECRGRR_ 0 0 0 REV__ENST00000434284.1_1_X:153001256-153003714:-|nuORF REV__ENST00000434284.1_1_X:153001256-153003714:-|nuORF MSMS UPN46_class_I_Rep_3 1 544.802001953125 2 544.801957 1087.58936 NaN NaN NaN NaN NaN NaN NaN 30.781 1 30.781 30.281 31.281 0 0 0 0 0.40625 1 5061 5061 2.3027 0 1 + 38035 22307 24065 24076 43229 43229 0.04907001828291868 RRECRGRR 8 Unmodified _RRECRGRR_ 0 0 0 REV__ENST00000434284.1_1_X:153001256-153003714:-|nuORF REV__ENST00000434284.1_1_X:153001256-153003714:-|nuORF MSMS UPN47_class_I_Rep_1 2 544.80224609375 2 544.801957 1087.58936 NaN NaN NaN NaN NaN NaN NaN 21.998 1 25.673 25.173 26.173 3.6749 0 0 0 0.40625 1 2483 2483 2.3027 0 1 + 38036 22307 24065 24076 43230 43230 0.04907001828291868 RREFIPIR 8 Unmodified _RREFIPIR_ 0 0 0 ENST00000476177.6_1_1:156264478-156265413:-|nuORF ENST00000476177.6_1_1:156264478-156265413:-|nuORF ENST00000476177.6_1_1:156264478-156265413:-|nuORF MSMS UPN47_class_I_Rep_1 2 543.8316650390625 2 543.830175 1085.6458 NaN NaN NaN NaN NaN NaN NaN 69.384 1 72.752 72.252 73.252 3.3678 0 0 0 0.40625 1 16808 16808 2.3027 0.4585 1 38037 6965 24066 24077 43231 43231 0.10639952936594455 RREGTVLKVT 10 Unmodified _RREGTVLKVT_ 0 0 0 ENST00000445160.2_1_3:197282243-197282711:-|nuORF ENST00000445160.2_1_3:197282243-197282711:-|nuORF ENST00000445160.2_1_3:197282243-197282711:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 579.8509521484375 2 579.851304 1157.68806 0.38365 0.00022246 0.22451 0.00013018 0.60816 0.00035264 579.851560162341 36.141 0.13022 36.141 36.045 36.176 0 11 9 2 0 0 0 0.56374 1 6647 6647 1.1933 0 1 70786 38038 6785 24067 24078 43232 43232 0.11551883554329834 RREIHPPF 8 Unmodified _RREIHPPF_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MSMS UPN48_class_I_Rep_1 5 526.2948608398438 2 526.293425 1050.5723 NaN NaN NaN NaN NaN NaN NaN 35.741 1 39.251 38.751 39.751 3.5101 0 0 0 0.40738 1 5886 5886 0.79363 0 1 38039 4784 24068 24079 43233 43233 0.049034044941208776 RREKKRSTKLK 11 Unmodified _RREKKRSTKLK_ 0 0 0 L1M2_dup2366|chr4:129062478-129063203:-|1.645815737024782|0.0042522436203374|8.6|150.0|17|3|sense L1M2_dup2366|chr4:129062478-129063203:-|1.645815737024782|0.0042522436203374|8.6|150.0|17|3|sense L1M2_dup2366|chr4:129062478-129063203:-|1.645815737024782|0.0042522436203374|8.6|150.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 477.30731201171875 3 477.307314 1428.90011 NaN NaN NaN NaN NaN NaN NaN 26.02 1 29.782 29.282 30.282 3.7624 0 0 0 0.38417 1 3661 3661 0.094841 0 1 38040 8674 24069 24080 43234 43234 0.2028197496510984 RRELLPAQ 8 Unmodified _RRELLPAQ_ 0 0 0 ENST00000297533.8_1_7:150778427-150778592:-|nuORF ENST00000297533.8_1_7:150778427-150778592:-|nuORF ENST00000297533.8_1_7:150778427-150778592:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 491.2922058105469 2 491.793258 981.571963 0.28323 0.00013929 0.99155 0.00048764 1.2748 0.00062693 491.79377979756805 80.627 0.15411 80.627 80.479 80.633 0 19 17 2 0 0 0 0.72333 1 18975 18975 0.69038 0 1 212600 38041 6063 24070 24081 43235 43235 0.08043984774280943 RREMLYKL 8 Unmodified _RREMLYKL_ 0 0 0 REV__ENSG00000261221|ENST00000568956|ZNF865 REV__ENSG00000261221|ENST00000568956|ZNF865 MSMS UPN48_class_I_Rep_2 6 554.6851806640625 2 554.818418 1107.62228 NaN NaN NaN NaN NaN NaN NaN 27.607 1 31.238 30.738 31.738 3.6311 0 0 0 0.40625 1 3680 3680 2.3027 0 1 + 38042 21398 24071 24082 43236 43236 0.072777711077606 RREPLFFG 8 Unmodified _RREPLFFG_ 0 0 0 REV__HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|184|3|anti-sense REV__HERVH-int_dup4990|chr14:71124624-71127713:+|1.176969905183913|0.0318843508095681|5.21|151.0|184|3|anti-sense MSMS UPN48_class_I_Rep_3 7 511.28277587890625 2 511.282526 1020.5505 NaN NaN NaN NaN NaN NaN NaN 39.204 1 42.86 42.36 43.36 3.6557 0 0 0 0.40738 1 6828 6828 0.79363 0 1 + 38043 23681 24072 24083 43237 43237 0.04104599745573978 RREPRLLRW 9 Unmodified _RREPRLLRW_ 0 0 0 REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF MSMS UPN48_class_I_Rep_1 5 641.3820190429688 2 641.38618 1280.75781 NaN NaN NaN NaN NaN NaN NaN 94.146 1 97.766 97.266 98.266 3.6208 0 0 0 0.4007 1 22648 22648 0.52476 0 1 + 38044 22078 24073 24084 43238 43238 0.12865807013577069 RREPRLLRW 9 Unmodified _RREPRLLRW_ 0 0 0 REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF REV__ENST00000389279.7_1_8:22462563-22463297:+|nuORF MSMS UPN48_class_I_Rep_2 6 641.3851928710938 2 641.38618 1280.75781 NaN NaN NaN NaN NaN NaN NaN 93.958 1 97.734 97.234 98.234 3.7761 0 0 0 0.4007 1 22343 22343 0.52476 0 1 + 38045 22078 24073 24084 43239 43239 0.12865807013577069 RRERINVF 8 Unmodified _RRERINVF_ 0 0 0 L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|30|2|sense L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|30|2|sense L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|30|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.3168334960938 2 545.317432 1088.62031 0.37371 0.00020379 -0.90141 -0.00049156 -0.52771 -0.00028777 545.3168392589663 82.767 0.325 82.767 82.73 83.055 0 49 29 3 0 0 0 0.82752 1 19631 19631 4.756 1.4747 1 601950 38046 13040 24074 24085 43240 43240 0.07954478414171717 RRERINVF 8 Unmodified _RRERINVF_ 0 0 0 L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|30|2|sense L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|30|2|sense L1MEc_dup15770|chr15:68115326-68116879:-|4.651695114778554|0.0738113736597307|5.98|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 545.3157958984375 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 83.813 1 87.225 86.725 87.725 3.4116 0 0 0 0.40746 1 20898 20898 0.69038 0.088878 1 38047 13040 24074 24085 43241 43241 0.07954478414171717 RRERKRLRAL 10 Unmodified _RRERKRLRAL_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 451.7637023925781 3 451.960249 1352.85892 0.062046 2.8042E-05 -3.9638 -0.0017915 -3.9018 -0.0017634 451.95883619028245 46.608 0.1946 50.357 50.19 50.385 3.7494 14 12 2 0 0 0 0.84575 1 9085 9085 1.7423 0 1 71921 + 38048 26669 24075 24086 43242 43242 0.19660258716317003 RRERKRLRAL 10 Unmodified _RRERKRLRAL_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|45|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 451.960249 1352.85892 0.090138 4.0739E-05 -2.7865 -0.0012594 -2.6964 -0.0012187 451.95868174894116 46.324 0.081848 49.961 49.922 50.004 3.6369 -0.19803 0.00043426 NaN 1.7423 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 37619 + 38049 26669 24075 24086 0.19660258716317003 RRERVKYL 8 Unmodified _RRERVKYL_ 0 0 0 REV__L1P1_dup1044|chr5:82013908-82016680:-|1.2514016480584285|0.0937558532180298|3.74|151.0|111|1|anti-sense REV__L1P1_dup1044|chr5:82013908-82016680:-|1.2514016480584285|0.0937558532180298|3.74|151.0|111|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3391723632812 2 560.340907 1118.66726 0.63482 0.00035571 -1.1884 -0.00066588 -0.55354 -0.00031017 560.3402141872834 94.681 0.31493 98.153 98.029 98.344 3.472 62 43 2 0 0 0 0.82752 1 23348 23348 0.69038 0.16561 1 77402 + 38050 28817 24076 24087 43243 43243 0.11267337965318802 RRETRQIY 8 Unmodified _RRETRQIY_ 0 0 0 REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|35|2|sense REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 561.3123168945312 2 561.312346 1120.61014 NaN NaN NaN NaN NaN NaN NaN 59.575 1 63.092 62.592 63.592 3.5169 0 0 0 0.40625 1 13014 13014 2.3027 0 1 + 38051 25271 24077 24088 43244 43244 0.05465870688931318 RREVLSAA 8 Unmodified _RREVLSAA_ 0 0 0 nc|ENSG00000073464|P51793-2|CLCN4;nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000073464|ENST00000380833|CLCN4;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000073464|P51793-2|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 MULTI-MSMS UPN47_class_I_Rep_3 4 451.2637023925781 2 451.264333 900.514114 -0.90743 -0.00040949 -0.015375 -6.9383E-06 -0.92281 -0.00041643 451.2641077615225 26.672 0.74868 30.019 29.757 30.506 3.3478 92 63 2 0 0 0 0.82752 1 4001 4001 2.5775 0 1 79138 38052 1116 24078 24089 43245 43245 0.05987722848840349 RREWSLEM 8 Unmodified _RREWSLEM_ 0 0 0 REV__nc|ENSG00000110148|P32239-2|CCKBR REV__nc|ENSG00000110148|P32239-2|CCKBR MULTI-SECPEP UPN47_class_I_Rep_2 3 553.27099609375 2 553.774208 1105.53386 0.51449 0.00028491 -2.6829 -0.0014857 -2.1684 -0.0012008 553.7726321582865 56.798 0.092045 60.099 60.041 60.133 3.3009 11 9 2 0 0 0 0.72333 1 13029 13029 2.3027 0.24298 1 136190 + 38053 31959 24079 24090 43246 43246 -0.014682692026781297 RRFGLFIF 8 Unmodified _RRFGLFIF_ 0 0 0 L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|282|2|anti-sense L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|282|2|anti-sense L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|282|2|anti-sense MSMS UPN46_class_I_Rep_3 1 528.3088989257812 2 528.311087 1054.60762 NaN NaN NaN NaN NaN NaN NaN 81.142 1 81.142 80.642 81.642 0 0 0 0 0.40604 1 19148 19148 2.5775 0 1 38054 14195 24080 24091 43247 43247 0.08250067021936047 RRFGVKTLK 9 Unmodified _RRFGVKTLK_ 0 0 0 REV__L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|75|2|sense REV__L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|75|2|sense MSMS UPN48_class_I_Rep_1 5 552.853759765625 2 552.85365 1103.69275 NaN NaN NaN NaN NaN NaN NaN 58.341 1 61.828 61.328 62.328 3.487 0 0 0 0.4007 1 12721 12721 0.52476 0 1 + 38055 28984 24081 24092 43248 43248 0.1450481248775759 RRFHFCIF 8 Unmodified _RRFHFCIF_ 0 0 0 THE1A_dup2611|chrX:81295220-81295574:+|1.2280819330149977|0.2737733939496031|2.17|151.0|5|2|sense THE1A_dup2611|chrX:81295220-81295574:+|1.2280819330149977|0.2737733939496031|2.17|151.0|5|2|sense THE1A_dup2611|chrX:81295220-81295574:+|1.2280819330149977|0.2737733939496031|2.17|151.0|5|2|sense MSMS UPN48_class_I_Rep_1 5 563.2938842773438 2 563.292371 1124.57019 NaN NaN NaN NaN NaN NaN NaN 67.279 1 70.731 70.231 71.231 3.4516 0 0 0 0.40604 1 15450 15450 2.5775 0.27475 1 38056 32861 24082 24093 43249 43249 0.012886524846635439 RRFHGSTD 8 Unmodified _RRFHGSTD_ 0 0 0 REV__nc|ENSG00000197043|P08133-2|ANXA6 REV__nc|ENSG00000197043|P08133-2|ANXA6 MSMS UPN47_class_I_Rep_1 2 488.2436828613281 2 488.24139 974.468226 NaN NaN NaN NaN NaN NaN NaN 112 1 115.57 115.07 116.07 3.572 0 0 0 0.40604 1 27634 27634 2.5775 0 1 + 38057 21064 24083 24094 43250 43250 -0.020029223333722257 RRFHGSTD 8 Unmodified _RRFHGSTD_ 0 0 0 REV__nc|ENSG00000197043|P08133-2|ANXA6 REV__nc|ENSG00000197043|P08133-2|ANXA6 MSMS UPN47_class_I_Rep_1 2 488.2427062988281 2 488.24139 974.468226 NaN NaN NaN NaN NaN NaN NaN 118.35 1 121.95 121.45 122.45 3.6036 0 0 0 0.40604 1 29366 29366 2.5775 0 1 + 38058 21064 24083 24094 43251 43251 -0.020029223333722257 RRFHGSTD 8 Unmodified _RRFHGSTD_ 0 0 0 REV__nc|ENSG00000197043|P08133-2|ANXA6 REV__nc|ENSG00000197043|P08133-2|ANXA6 MSMS UPN48_class_I_Rep_1 5 488.2430419921875 2 488.24139 974.468226 NaN NaN NaN NaN NaN NaN NaN 111.83 1 115.46 114.96 115.96 3.6321 0 0 0 0.40604 1 27133 27133 2.5775 0 1 + 38059 21064 24083 24094 43252 43252 -0.020029223333722257 RRFHSLHIK 9 Unmodified _RRFHSLHIK_ 0 0 0 REV__MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|16|3|anti-sense REV__MER102b_dup2295|chr10:97379937-97380163:+|1.1020427637538397|0.0055697104306371|7.63|151.0|16|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 597.8568725585938 2 597.354348 1192.69414 0.45156 0.00026974 1.9945 0.0011914 2.4461 0.0014612 597.8562120950553 83.482 0.57435 87.021 86.548 87.122 3.5386 85 58 2 0 0 0 0.48846 1 20901 20901 1.8442 0 1 64736 + 38060 31065 24084 24095 43253 43253 0.10550446576507966 RRFIVVEG 8 Unmodified _RRFIVVEG_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MSMS UPN48_class_I_Rep_3 7 488.2903747558594 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 110.48 1 114.15 113.65 114.65 3.67 0 0 0 0.40404 1 26215 26215 5.2307 0 1 38061 1343 24085 24096 43254 43254 0.07784886262629698 RRFLKKIKNMI 11 Unmodified _RRFLKKIKNMI_ 0 0 0 L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|2|1|sense L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|2|1|sense L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 483.3089599609375 3 482.974508 1445.90169 0.13372 6.4583E-05 0.80944 0.00039094 0.94316 0.00045552 482.97469925884053 50.736 1.074 54.26 53.654 54.728 3.5246 182 67 3 0 0 0 0.68081 1 10300 10300 0.45452 0.31463 1 222940 38062 10590 24086 24097 43255 43255 0.19657892729537707 RRFLKKIKNMI 11 Unmodified _RRFLKKIKNMI_ 0 0 0 L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|2|1|sense L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|2|1|sense L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 482.9747314453125 3 482.974508 1445.90169 0.22306 0.00010773 0.81627 0.00039424 1.0393 0.00050197 482.97459690146 50.503 1.442 54.198 53.65 55.092 3.6946 203 91 3 0 0 0 0.68132 1 10299 10299 0.40827 0.26837 1 258060 38063 10590 24086 24097 43256 43256 0.19657892729537707 RRFRFRGITWP 11 Unmodified _RRFRFRGITWP_ 0 0 0 REV__HERVL74-int_dup285|chr15:30859604-30860654:+|2.9833215543925715|0.0061195723400556|8.93|150.0|27|3|sense REV__HERVL74-int_dup285|chr15:30859604-30860654:+|2.9833215543925715|0.0061195723400556|8.93|150.0|27|3|sense MSMS UPN48_class_I_Rep_3 7 497.9512023925781 3 497.952983 1490.83712 NaN NaN NaN NaN NaN NaN NaN 21.917 1 25.631 25.131 26.131 3.7144 0 0 0 0.38417 1 2150 2150 0.50596 0.41111 1 + 38064 23924 24087 24098 43257 43257 0.11133453967750029 RRFRTLQLY 9 Unmodified _RRFRTLQLY_ 0 0 0 REV__L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|68|3|sense REV__L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|68|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 627.367431640625 2 626.867289 1251.72002 0.46481 0.00029137 0.21326 0.00013369 0.67807 0.00042506 627.3671489897545 60.452 0.067001 63.833 63.781 63.848 3.3815 9 6 2 0 0 0 0.12532 1 14113 14113 0.52476 0 1 77958 + 38065 26870 24088 24099 43258 43258 0.10423296028147888 RRFSRNQL 8 Unmodified _RRFSRNQL_ 0 0 0 REV__L1M4_dup13241|chr10:92657260-92657974:+|1.4692053285564712|0.040939503075013|5.17|151.0|19|2|sense REV__L1M4_dup13241|chr10:92657260-92657974:+|1.4692053285564712|0.040939503075013|5.17|151.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 538.80908203125 2 538.807231 1075.59991 NaN NaN NaN NaN NaN NaN NaN 58.633 1 61.799 61.299 62.299 3.1658 0 0 0 0.388 1 13639 13639 12.532 1.7076 1 + 38066 24361 24089 24100 43259 43259 0.06513307754380548 RRFTEIYEF 9 Unmodified _RRFTEIYEF_ 0 0 0 nc|ENSG00000158517|P14598-2|NCF1;ENST00000449343.6_1_7:74188378-74197664:+|nuORF;nc|ENSG00000165178|A8MVU1|NCF1C;ENSG00000158517|ENST00000289473|NCF1;nc|ENSG00000290838|A6NI72|NCF1B;ENST00000398421.6_1_7:74188378-74193456:+|nuORF nc|ENSG00000158517|P14598-2|NCF1 nc|ENSG00000158517|P14598-2|NCF1 MULTI-MSMS UPN46_class_I_Rep_3 1 420.8841247558594 3 420.8839 1259.62987 0.01724 7.2562E-06 -0.029914 -1.259E-05 -0.012674 -5.3342E-06 420.88383936513316 58.507 1.3456 58.507 57.945 59.291 0 386 151 4 0 0 0 0.23293 7 12779 12779;12844;12877;12911;12939;12945;12983 12.873 2.4423 1 1310700 38067 3802 24090 24101 43260;43261;43262;43263;43264;43265;43266 43260 0.010442019090305621 RRFTEIYEF 9 Unmodified _RRFTEIYEF_ 0 0 0 nc|ENSG00000158517|P14598-2|NCF1;ENST00000449343.6_1_7:74188378-74197664:+|nuORF;nc|ENSG00000165178|A8MVU1|NCF1C;ENSG00000158517|ENST00000289473|NCF1;nc|ENSG00000290838|A6NI72|NCF1B;ENST00000398421.6_1_7:74188378-74193456:+|nuORF nc|ENSG00000158517|P14598-2|NCF1 nc|ENSG00000158517|P14598-2|NCF1 MULTI-MSMS UPN46_class_I_Rep_3 1 630.8221435546875 2 630.822212 1259.62987 0.62733 0.00039573 -0.2173 -0.00013708 0.41003 0.00025866 630.8219622287647 58.382 0.95824 58.382 58.025 58.983 0 239 108 3 0 0 0 0.066364 6 12908 12805;12838;12872;12908;12941;12977 41.956 29.715 1 521840 38068 3802 24090 24101 43267;43268;43269;43270;43271;43272 43270 0.010442019090305621 RRFVGLGTL 9 Unmodified _RRFVGLGTL_ 0 0 0 ENSG00000153086|ENST00000356140|ACMSD;nc|ENSG00000153086|Q8TDX5-2|ACMSD ENSG00000153086|ENST00000356140|ACMSD ENSG00000153086|ENST00000356140|ACMSD MSMS UPN46_class_I_Rep_3 1 509.9460144042969 2 509.811451 1017.60835 NaN NaN NaN NaN NaN NaN NaN 82.833 1 82.833 82.333 83.333 0 0 0 0 0.4029 1 19644 19644 0 0 1 38069 3637 24091 24102 43273 43273 0.10024861671013241 RRFWAETL 8 Unmodified _RRFWAETL_ 0 0 0 L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|215|1|anti-sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|247|2|anti-sense;L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|189|1|anti-sense L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|215|1|anti-sense L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|215|1|anti-sense MSMS UPN47_class_I_Rep_1 2 539.7923583984375 2 539.793258 1077.57196 NaN NaN NaN NaN NaN NaN NaN 78.099 1 81.528 81.028 82.028 3.4289 0 0 0 0.40292 1 19405 19405 6.7232 0 1 38070 14206 24092 24103 43274 43274 0.03627984774266224 RRFWARRW 8 Unmodified _RRFWARRW_ 0 0 0 L1PA5_dup8372|chr11:86308572-86313073:-|1.2931150363270427|0.0986303059922586|3.71|150.0|210|2|anti-sense L1PA5_dup8372|chr11:86308572-86313073:-|1.2931150363270427|0.0986303059922586|3.71|150.0|210|2|anti-sense L1PA5_dup8372|chr11:86308572-86313073:-|1.2931150363270427|0.0986303059922586|3.71|150.0|210|2|anti-sense MSMS UPN48_class_I_Rep_3 7 617.3267211914062 2 617.346858 1232.67916 NaN NaN NaN NaN NaN NaN NaN 68.689 1 72.199 71.699 72.699 3.5094 0 0 0 0.40746 1 15768 15768 0.69038 0.088878 1 38071 14515 24093 24104 43275 43275 0.07212999499142825 RRFYWEVKV 9 Unmodified _RRFYWEVKV_ 0 0 0 ENST00000505213.5_2_13:33112769-33112853:-|nuORF ENST00000505213.5_2_13:33112769-33112853:-|nuORF ENST00000505213.5_2_13:33112769-33112853:-|nuORF MSMS UPN48_class_I_Rep_3 7 641.8584594726562 2 641.85639 1281.69823 NaN NaN NaN NaN NaN NaN NaN 107.33 1 111.01 110.51 111.51 3.6813 0 0 0 0.38639 1 25307 25307 3.9444 2.1002 1 38072 7147 24094 24105 43276 43276 0.06864491279520735 RRGAAKHL 8 Unmodified _RRGAAKHL_ 0 0 0 REV__THE1C_dup3639|chr6:2297835-2298195:+|1.7643639662205148|0.0254352744852576|6.12|151.0|18|1|anti-sense REV__THE1C_dup3639|chr6:2297835-2298195:+|1.7643639662205148|0.0254352744852576|6.12|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_2 6 454.7799072265625 2 454.780485 907.546417 NaN NaN NaN NaN NaN NaN NaN 116.27 1 119.93 119.43 120.43 3.6607 0 0 0 0.40746 1 27850 27850 0.69038 0 1 + 38073 32280 24095 24106 43277 43277 0.08894555042502361 RRGAVIYL 8 Unmodified _RRGAVIYL_ 0 0 0 REV__ENSG00000204574|ENST00000326195|ABCF1 REV__ENSG00000204574|ENST00000326195|ABCF1 MSMS UPN47_class_I_Rep_3 4 474.28240966796875 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 115.45 1 118.93 118.43 119.43 3.4802 0 0 0 0.40364 1 28390 28390 5.7604 1.0044 1 + 38074 21200 24096 24107 43278 43278 0.09581190125220473 RRGCVRLRGA 10 Unmodified _RRGCVRLRGA_ 0 0 0 nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9 nc|ENSG00000117859|Q96SU4-2|OSBPL9 nc|ENSG00000117859|Q96SU4-2|OSBPL9 MSMS UPN48_class_I_Rep_3 7 572.3369750976562 2 572.335633 1142.65671 NaN NaN NaN NaN NaN NaN NaN 60.354 1 63.871 63.371 64.371 3.5169 0 0 0 0.53105 1 13252 13252 3.2813 0.28607 1 38075 2233 24097 24108 43279 43279 0.09109032039259546 RRGFPVLAG 9 Unmodified _RRGFPVLAG_ 0 0 0 SVA_B_dup686|chr17:39333171-39334488:+|2.141501538391253|0.0480914695827511|5.48|151.0|25|3|sense SVA_B_dup686|chr17:39333171-39334488:+|2.141501538391253|0.0480914695827511|5.48|151.0|25|3|sense SVA_B_dup686|chr17:39333171-39334488:+|2.141501538391253|0.0480914695827511|5.48|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.7890319824219 2 486.790518 971.566484 0.23349 0.00011366 -0.83245 -0.00040523 -0.59896 -0.00029157 486.78998407785207 35.097 1.0992 38.771 38.301 39.4 3.6735 136 105 2 0 0 0 0.45688 1 5709 5709 4.756 0 1 96842 38076 32845 24098 24109 43280 43280 0.0795630598245225 RRGGGRGP 8 Unmodified _RRGGGRGP_ 0 0 0 REV__ENST00000518778.5_3_5:179224819-179224933:-|nuORF REV__ENST00000518778.5_3_5:179224819-179224933:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 406.8580017089844 2 406.733535 811.452517 -0.18274 -7.4325E-05 -2.6649 -0.0010839 -2.8477 -0.0011582 406.73387766895445 30.629 0.070345 30.629 30.591 30.661 0 7 5 2 0 0 0 0.72333 1 5019 5019 0 0 1 13183 + 38077 22481 24099 24110 43281 43281 0.03924835940222238 RRGGPKLS 8 Unmodified _RRGGPKLS_ 0 0 0 REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 435.7669372558594 2 435.767043 869.519533 0.1381 6.0181E-05 0.15989 6.9674E-05 0.29799 0.00012985 435.7670625732121 82.236 0.48837 82.236 81.886 82.374 0 81 44 3 0 0 0 0.82752 1 19465 19465 5.2307 0 1 891470 + 38078 23012 24100 24111 43282 43282 0.07955446431321889 RRGGPKLS 8 Unmodified _RRGGPKLS_ 0 0 0 REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 435.767043 869.519533 0.1381 6.0181E-05 0.15989 6.9674E-05 0.29799 0.00012985 435.7670625732121 82.236 0.48837 82.236 81.886 82.374 0 -0.1257 -0.00017758 NaN 5.2307 81 44 3 NaN NaN NaN NaN 0 NaN NaN 0 891470 + 38079 23012 24100 24111 0.07955446431321889 RRGGPKLS 8 Unmodified _RRGGPKLS_ 0 0 0 REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 435.767043 869.519533 -0.37406 -0.000163 0.47473 0.00020687 0.10068 4.3872E-05 435.7671630985135 79.082 1.1178 82.377 81.972 83.09 3.295 0.015052 9.682E-05 NaN 5.2307 178 105 2 NaN NaN NaN NaN 0 NaN NaN 0 327610 + 38080 23012 24100 24111 0.07955446431321889 RRGHFLTY 8 Unmodified _RRGHFLTY_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|126|2|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|126|2|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|126|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 525.2667236328125 2 525.2856 1048.55665 0.011483 6.032E-06 -1.334 -0.00070071 -1.3225 -0.00069468 525.2858222108181 44.286 0.060268 47.981 47.932 47.992 3.6951 4 2 2 0 0 0 0.72333 1 9184 9184 2.5775 0 1 16631 38081 9290 24101 24112 43283 43283 0.03431117977083886 RRGKKISV 8 Unmodified _RRGKKISV_ 0 0 0 ENST00000335281.8_1_14:52434230-52434287:+|nuORF ENST00000335281.8_1_14:52434230-52434287:+|nuORF ENST00000335281.8_1_14:52434230-52434287:+|nuORF MSMS UPN46_class_I_Rep_3 1 472.31201171875 2 472.311618 942.608683 NaN NaN NaN NaN NaN NaN NaN 102.04 1 102.04 101.54 102.54 0 0 0 0 0.40746 1 24899 24899 0.69038 0 1 38082 6201 24102 24113 43284 43284 0.13508281390841148 RRGKPGSL 8 Unmodified _RRGKPGSL_ 0 0 0 REV__ENST00000477910.5_2_17:1419387-1419886:-|nuORF REV__ENST00000477910.5_2_17:1419387-1419886:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.767333984375 2 435.767043 869.519533 0.058511 2.5497E-05 -0.12143 -5.2915E-05 -0.062918 -2.7418E-05 435.7668638730344 79.324 0.29836 82.769 82.726 83.024 3.4456 49 31 2 0 0 0 0.82752 1 19810 19810 0.69038 0 1 141640 + 38083 19012 24103 24114 43285 43285 0.07955446431321889 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.59246826171875 3 422.592286 1264.75503 0.03171 1.34E-05 0.41394 0.00017493 0.44565 0.00018833 422.5924157346432 53.671 0.46086 53.671 53.552 54.013 0 96 49 2 0 0 0 0.6724 1 11605 11605 1.2148 0.51716 1 319480 38084 17 24104 24115 43286 43286 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.5921936035156 3 422.592286 1264.75503 0.020775 8.7792E-06 0.32861 0.00013887 0.34939 0.00014765 422.59237386002786 55.987 0.24874 55.987 55.796 56.045 0 37 30 2 0 0 0 0.6724 1 12203 12203 1.2148 0.51716 1 201790 38085 17 24104 24115 43287 43287 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.92681884765625 3 422.592286 1264.75503 0.017801 7.5226E-06 0.48125 0.00020337 0.49906 0.0002109 422.59241726160644 56.548 0.20114 56.548 56.385 56.586 0 35 23 2 0 0 0 0.66092 1 12315 12315 2.2527 0.92309 1 125230 38086 17 24104 24115 43288 43288 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 422.59246826171875 3 422.592286 1264.75503 -0.047794 -2.0197E-05 0.55825 0.00023591 0.51046 0.00021572 422.59246105546777 55.558 0.65942 59.066 58.856 59.515 3.5082 78 43 2 0 0 0 0.67356 1 11896 11896 1.1098 0.41209 1 186850 38087 17 24104 24115 43289 43289 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 422.59246826171875 3 422.592286 1264.75503 -0.037154 -1.5701E-05 0.46733 0.00019749 0.43017 0.00018179 422.59246130904825 56.071 0.53894 59.572 59.472 60.011 3.5014 95 42 3 0 0 0 0.67356 1 12027 12027 1.1098 0.41209 1 264580 38088 17 24104 24115 43290 43290 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 422.59259033203125 3 422.592286 1264.75503 0.032999 1.3945E-05 0.61157 0.00025844 0.64457 0.00027239 422.59248144264774 59.504 0.82442 62.984 62.603 63.427 3.4801 97 57 3 0 0 0 0.64331 1 13084 13084 3.8459 1.5631 1 469820 38089 17 24104 24115 43291 43291 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 422.59246826171875 3 422.592286 1264.75503 0.11224 4.7432E-05 0.43095 0.00018211 0.54319 0.00022955 422.592384539614 65.127 0.76342 68.606 68.362 69.125 3.4792 91 56 3 0 0 0 0.66092 1 14765 14765 2.2527 1.0379 1 206740 38090 17 24104 24115 43292 43292 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.5926208496094 3 422.592286 1264.75503 0.076371 3.2274E-05 0.59845 0.0002529 0.67482 0.00028517 422.5925590515442 59.226 0.65424 62.749 62.331 62.985 3.5231 60 43 2 0 0 0 0.67356 1 12916 12916 1.1098 0.41209 1 351890 38091 17 24104 24115 43293 43293 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.59246826171875 3 422.592286 1264.75503 0.083138 3.5133E-05 0.37792 0.00015971 0.46106 0.00019484 422.59237497616914 59.513 0.25792 63.03 62.929 63.187 3.5169 39 18 3 0 0 0 0.66092 1 13005 13005 2.2527 1.0379 1 256650 38092 17 24104 24115 43294 43294 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 422.592286 1264.75503 0.020775 8.7792E-06 0.32861 0.00013887 0.34939 0.00014765 422.59237386002786 55.987 0.24874 55.987 55.796 56.045 0 0.031738 -0.00027802 NaN 1.2148 37 30 2 NaN NaN NaN NaN 0 NaN NaN 0 201790 38093 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 422.592286 1264.75503 0.017801 7.5226E-06 0.48125 0.00020337 0.49906 0.0002109 422.59241726160644 56.548 0.20114 56.548 56.385 56.586 0 -0.17763 -0.00069824 NaN 2.2527 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 125230 38094 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592286 1264.75503 -0.097139 -4.105E-05 -0.038903 -1.644E-05 -0.13604 -5.7491E-05 422.59207620765966 52.2 0.18504 55.758 55.652 55.837 3.5585 -0.19686 -0.00074394 NaN 1.2148 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 181900 38095 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592286 1264.75503 0.014155 5.982E-06 0.44458 0.00018788 0.45873 0.00019386 422.5923818842489 59.169 0.15565 62.586 62.527 62.683 3.4171 -0.086379 -0.00028208 NaN 1.1098 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 57765 38096 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.592286 1264.75503 -0.4683 -0.0001979 0.88495 0.00037397 0.41665 0.00017607 422.5926719384141 59.36 0.22191 62.633 62.558 62.78 3.2731 -0.038824 0.00027621 NaN 1.1098 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 74362 38097 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592286 1264.75503 -0.66427 -0.00028072 0.87311 0.00036897 0.20884 8.8254E-05 422.5926057666689 59.705 0.54556 62.87 62.804 63.35 3.1651 0.19753 0.0002612 NaN 1.1098 50 34 2 NaN NaN NaN NaN 0 NaN NaN 0 97647 38098 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592286 1264.75503 -0.5516 -0.0002331 1.0956 0.00046299 0.54399 0.00022989 422.5927285430679 53.708 0.90378 56.903 56.488 57.391 3.1948 0.17763 8.0603E-05 NaN 2.2527 119 55 3 NaN NaN NaN NaN 0 NaN NaN 0 293940 38099 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 -0.0072211 -3.0516E-06 0.61709 0.00026078 0.60987 0.00025773 422.59254979440703 64.881 0.15916 68.335 68.296 68.455 3.4541 -0.12616 0.00027266 NaN 2.2527 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 183740 38100 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 0.032999 1.3945E-05 0.61157 0.00025844 0.64457 0.00027239 422.59248144264774 59.504 0.82442 62.984 62.603 63.427 3.4801 -0.023213 7.4907E-05 NaN 3.8459 97 57 3 NaN NaN NaN NaN 0 NaN NaN 0 469820 38101 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 0.020736 8.7628E-06 0.56382 0.00023827 0.58455 0.00024703 422.5925399027093 59.043 0.2846 62.523 62.318 62.603 3.4801 -0.14949 -0.00013091 NaN 1.1098 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 183230 38102 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 422.592286 1264.75503 0.11224 4.7432E-05 0.43095 0.00018211 0.54319 0.00022955 422.592384539614 65.127 0.76342 68.606 68.362 69.125 3.4792 0.14491 3.6672E-05 NaN 2.2527 91 56 3 NaN NaN NaN NaN 0 NaN NaN 0 206740 38103 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 422.592286 1264.75503 0.14329 6.0551E-05 0.31739 0.00013413 0.46067 0.00019468 422.59237967779484 64.935 0.8621 68.443 67.918 68.78 3.5077 -0.018754 -0.00010729 NaN 2.2527 85 67 2 NaN NaN NaN NaN 0 NaN NaN 0 140230 38104 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 422.592286 1264.75503 -0.023568 -9.9598E-06 0.62792 0.00026535 0.60435 0.00025539 422.92688065041676 52.523 0.51315 56.12 56.072 56.585 3.5979 0.16512 0.00010143 NaN 1.2148 50 34 2 NaN NaN NaN NaN 0 NaN NaN 0 282660 38105 17 24104 24115 0.133242155643984 RRGLAMLPRPV 11 Unmodified _RRGLAMLPRPV_ 0 0 0 AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense;AluJb_dup110632|chr17:78136183-78136487:+|1.4794807071358411|0.1140651897614298|3.7|151.0|18|3|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense AluJr_dup55585|chr12:51158010-51158310:-|1.23003493947792|0.0701924310579952|4.13|151.0|23|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 422.592286 1264.75503 0.083138 3.5133E-05 0.37792 0.00015971 0.46106 0.00019484 422.59237497616914 59.513 0.25792 63.03 62.929 63.187 3.5169 0.023213 -0.00022131 NaN 3.8459 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 256650 38106 17 24104 24115 0.133242155643984 RRGLHPRRR 9 Unmodified _RRGLHPRRR_ 0 0 0 REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B MSMS UPN47_class_I_Rep_3 4 602.3729858398438 2 602.373938 1202.73332 NaN NaN NaN NaN NaN NaN NaN 81.95 1 85.273 84.773 85.773 3.3231 0 0 0 0.4007 1 20530 20530 0.52476 0 1 + 38107 20996 24105 24116 43295 43295 0.14006591650718292 RRGPELGK 8 Unmodified _RRGPELGK_ 0 0 0 REV__ENST00000376592.5_2_1:11849260-11849482:-|nuORF REV__ENST00000376592.5_2_1:11849260-11849482:-|nuORF MSMS UPN47_class_I_Rep_2 3 456.7718811035156 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 18.237 1 21.627 21.127 22.127 3.3898 0 0 0 0.40643 1 1508 1508 2.0598 0 1 + 38108 22019 24106 24117 43296 43296 0.07079429085752054 RRGPLGLST 9 Unmodified _RRGPLGLST_ 0 0 0 REV__ENST00000581347.2_1_18:5892134-5895090:-|nuORF REV__ENST00000581347.2_1_18:5892134-5895090:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.7855224609375 2 478.785433 955.556313 0.24853 0.00011899 -0.070627 -3.3815E-05 0.1779 8.5176E-05 478.78533088623215 82.948 0.59021 86.654 86.393 86.983 3.7066 139 78 2 0 0 0 0.46434 1 19634 19634 4.3292 4.3292 1 240740 + 38109 23129 24107 24118 43297 43297 0.07675698257230579 RRGPRMTP 8 Unmodified _RRGPRMTP_ 0 0 0 ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENST00000505322.5_1_1:2100378-2116445:+|nuORF ENST00000505322.5_1_1:2100378-2116445:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.7723083496094 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 21.46 1 25.174 24.674 25.674 3.7144 0 0 0 0.40643 1 2018 2018 2.0598 0 1 38110 7148 24108 24119 43298 43298 0.0430689144519647 RRGPRVPR 8 Unmodified _RRGPRVPR_ 0 0 0 REV__nc|ENSG00000180900|Q14160-2|SCRIB REV__nc|ENSG00000180900|Q14160-2|SCRIB MSMS UPN46_class_I_Rep_3 1 497.31170654296875 2 497.312484 992.610414 NaN NaN NaN NaN NaN NaN NaN 84.246 1 84.246 83.746 84.746 0 0 0 0 0.40746 1 20034 20034 0.69038 0 1 + 38111 20717 24109 24120 43299 43299 0.1138133519945086 RRGQTVLI 8 Unmodified _RRGQTVLI_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MSMS UPN47_class_I_Rep_2 3 471.7958984375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 70.658 1 73.941 73.441 74.441 3.2828 0 0 0 0.40604 1 17228 17228 2.5775 0 1 + 38112 18562 24110 24121 43300 43300 0.10392288636899139 RRGRAGHH 8 Unmodified _RRGRAGHH_ 0 0 0 ENST00000327876.4_1_2:47747956-47748880:-|nuORF ENST00000327876.4_1_2:47747956-47748880:-|nuORF ENST00000327876.4_1_2:47747956-47748880:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 473.2607727050781 2 473.763158 945.511763 -0.81649 -0.00038682 -0.44001 -0.00020846 -1.2565 -0.00059528 473.7630615753377 16.612 0.047195 19.974 19.953 20 3.3619 6 4 2 0 0 0 0.72333 1 1071 1071 0 0 1 12601 38113 6177 24111 24122 43301 43301 0.03682731954404517 RRGRRKRKE 9 Unmodified _RRGRRKRKE_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 621.3931884765625 2 621.392328 1240.7701 0.6623 0.00041155 0.71531 0.00044449 1.3776 0.00085604 621.3928116329056 100.67 0.083557 100.67 100.62 100.71 0 9 6 2 0 0 0 0.5015 1 24544 24544 0.45834 0 1 359030 38114 10362 24112 24123 43302 43302 0.15934843476634342 RRGRRKRKE 9 Unmodified _RRGRRKRKE_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 621.3937377929688 2 621.392328 1240.7701 NaN NaN NaN NaN NaN NaN NaN 97.123 1 100.9 100.4 101.4 3.7767 0 0 0 0.40098 1 24072 24072 0.45834 0 1 38115 10362 24112 24123 43303 43303 0.15934843476634342 RRGRRKRKE 9 Unmodified _RRGRRKRKE_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 621.3934936523438 2 621.392328 1240.7701 0.51167 0.00031795 0.68786 0.00042743 1.1995 0.00074537 621.3928381551223 97.073 0.2215 100.49 100.39 100.61 3.414 36 29 2 0 0 0 0.5015 1 24049 24049 0.45834 0 1 117150 38116 10362 24112 24123 43304 43304 0.15934843476634342 RRGRRKRKE 9 Unmodified _RRGRRKRKE_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 621.3933715820312 2 621.392328 1240.7701 0.58751 0.00036507 0.51343 0.00031904 1.1009 0.00068411 621.3925427785387 96.921 0.24483 100.83 100.79 101.03 3.9084 40 31 2 0 0 0 0.48846 1 22968 22968 1.8442 0 1 224350 38117 10362 24112 24123 43305 43305 0.15934843476634342 RRGRRKRKE 9 Unmodified _RRGRRKRKE_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 621.392328 1240.7701 0.49305 0.00030638 0.95638 0.00059429 1.4494 0.00090067 621.3929185019182 96.429 0.09565 100.21 100.15 100.25 3.7804 -0.34075 0.00034585 NaN 1.8442 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 322520 38118 10362 24112 24123 0.15934843476634342 RRGRRKRKE 9 Unmodified _RRGRRKRKE_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 621.392328 1240.7701 0.58751 0.00036507 0.51343 0.00031904 1.1009 0.00068411 621.3925427785387 96.921 0.24483 100.83 100.79 101.03 3.9084 0.27988 -0.00020464 NaN 1.8442 40 31 2 NaN NaN NaN NaN 0 NaN NaN 0 224350 38119 10362 24112 24123 0.15934843476634342 RRGRRRRP 8 Unmodified _RRGRRRRP_ 0 0 0 ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 555.3543090820312 2 555.353006 1108.69146 0.61466 0.00034135 0.64223 0.00035666 1.2569 0.00069801 555.3532893190433 92.079 0.5016 95.545 95.325 95.827 3.4652 121 70 2 0 0 0 0.82752 2 22733 22733;22792 2.5775 0 1 355030 38120 6239 24113 24124 43306;43307 43306 0.14146035962198766 RRGRRRRP 8 Unmodified _RRGRRRRP_ 0 0 0 ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 555.353006 1108.69146 0.41872 0.00023254 1.2402 0.00068875 1.6589 0.00092129 555.3537002126072 95.616 0.13059 95.616 95.603 95.734 0 0.026356 0.00037996 NaN 2.5775 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1610700 38121 6239 24113 24124 0.14146035962198766 RRGRRRRP 8 Unmodified _RRGRRRRP_ 0 0 0 ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 555.353006 1108.69146 0.51068 0.00028361 0.55383 0.00030757 1.0645 0.00059118 555.3532190336107 91.935 0.33842 95.64 95.54 95.878 3.7053 0.050828 -0.0003824 NaN 2.5775 78 42 2 NaN NaN NaN NaN 0 NaN NaN 0 907990 38122 6239 24113 24124 0.14146035962198766 RRGRRRRP 8 Unmodified _RRGRRRRP_ 0 0 0 ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 555.353006 1108.69146 0.49765 0.00027637 0.8235 0.00045733 1.3212 0.0007337 555.8549314078689 92.202 0.32785 95.606 95.358 95.686 3.4034 0.016412 -8.2879E-05 NaN 2.5775 71 45 3 NaN NaN NaN NaN 0 NaN NaN 0 638930 38123 6239 24113 24124 0.14146035962198766 RRGRRRRP 8 Unmodified _RRGRRRRP_ 0 0 0 ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF ENST00000342854.9_2_5:133450446-133450680:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 555.353006 1108.69146 0.40806 0.00022662 1.0353 0.00057496 1.4434 0.00080157 555.3535879780666 91.677 0.47652 95.54 95.351 95.828 3.8634 -0.04904 0.00015237 NaN 2.5775 148 66 3 NaN NaN NaN NaN 0 NaN NaN 0 1042700 38124 6239 24113 24124 0.14146035962198766 RRGRWPPQ 8 Unmodified _RRGRWPPQ_ 0 0 0 nc|ENSG00000175198|P05165-3|PCCA;nc|ENSG00000175198|P05165-2|PCCA;ENSG00000175198|ENST00000376285|PCCA nc|ENSG00000175198|P05165-3|PCCA nc|ENSG00000175198|P05165-3|PCCA MSMS UPN48_class_I_Rep_1 5 526.7967529296875 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 34.867 1 38.381 37.881 38.881 3.5144 0 0 0 0.40746 1 5632 5632 0.69038 0 1 38125 4711 24114 24125 43308 43308 0.05505342445508177 RRGRYDMV 8 Unmodified _RRGRYDMV_ 0 0 0 REV__nc|ENSG00000132463|Q12849-5|GRSF1 REV__nc|ENSG00000132463|Q12849-5|GRSF1 MSMS UPN47_class_I_Rep_3 4 526.7733154296875 2 526.774542 1051.53453 NaN NaN NaN NaN NaN NaN NaN 27.903 1 31.237 30.737 31.737 3.3337 0 0 0 0.40604 1 4303 4303 2.5775 0 1 + 38126 19017 24115 24126 43309 43309 0.010825702369857026 RRGSIVLF 8 Unmodified _RRGSIVLF_ 0 0 0 REV__L1MB3_dup12654|chr13:77246672-77247957:+|1.0641931756838956|0.0550972744113527|4.27|151.0|40|3|sense REV__L1MB3_dup12654|chr13:77246672-77247957:+|1.0641931756838956|0.0550972744113527|4.27|151.0|40|3|sense MSMS UPN47_class_I_Rep_3 4 474.282470703125 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 109.93 1 113.47 112.97 113.97 3.5347 0 0 0 0.40604 1 27006 27006 2.5775 0 1 + 38127 25814 24116 24127 43310 43310 0.09581190125209105 RRGSTQDPFT 10 Unmodified _RRGSTQDPFT_ 0 0 0 REV__MLT1J_dup2607|chr3:25744559-25745032:+|2.570701377718437|0.175002396020931|3.88|151.0|23|1|anti-sense REV__MLT1J_dup2607|chr3:25744559-25745032:+|2.570701377718437|0.175002396020931|3.88|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_2 3 583.24658203125 2 582.791444 1163.56833 NaN NaN NaN NaN NaN NaN NaN 18.468 1 21.858 21.358 22.358 3.3898 0 0 0 0.53105 1 1565 1565 1.4819 0.79152 1 + 38128 31776 24117 24128 43311 43311 -0.0069072979026714165 RRHCFIHRA 9 Unmodified _RRHCFIHRA_ 0 0 0 Tigger1_dup8931|chr12:9989373-9991154:+|4.460917553444554|0.0766499785739882|5.86|151.0|111|3|anti-sense Tigger1_dup8931|chr12:9989373-9991154:+|4.460917553444554|0.0766499785739882|5.86|151.0|111|3|anti-sense Tigger1_dup8931|chr12:9989373-9991154:+|4.460917553444554|0.0766499785739882|5.86|151.0|111|3|anti-sense MSMS UPN48_class_I_Rep_2 6 598.3223266601562 2 598.322525 1194.6305 NaN NaN NaN NaN NaN NaN NaN 77.924 1 81.547 81.047 82.047 3.6222 0 0 0 0.39428 1 18472 18472 2.0598 0 1 38129 33205 24118 24129 43312 43312 0.04096762867743564 RRHKHAFH 8 Unmodified _RRHKHAFH_ 0 0 0 L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|10|2|sense L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|10|2|sense L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 544.80224609375 2 544.802283 1087.59001 NaN NaN NaN NaN NaN NaN NaN 15.786 1 15.786 15.286 16.286 0 0 0 0 0.40798 1 963 963 0 0 1 38130 12793 24119 24130 43313 43313 0.04972164539640289 RRHKILDSP 9 Unmodified _RRHKILDSP_ 0 0 0 REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275 REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275 MSMS UPN47_class_I_Rep_2 3 561.332275390625 2 561.330539 1120.64652 NaN NaN NaN NaN NaN NaN NaN 72.756 1 76.053 75.553 76.553 3.2971 0 0 0 0.39428 1 17852 17852 2.0598 0 1 + 38131 17732 24120 24131 43314 43314 0.09102747585666293 RRHKILDSP 9 Unmodified _RRHKILDSP_ 0 0 0 REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275 REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275 MSMS UPN47_class_I_Rep_3 4 561.3308715820312 2 561.330539 1120.64652 NaN NaN NaN NaN NaN NaN NaN 72.737 1 75.964 75.464 76.464 3.2271 0 0 0 0.39428 1 17923 17923 2.0598 0 1 + 38132 17732 24120 24131 43315 43315 0.09102747585666293 RRHLLPRRL 9 Unmodified _RRHLLPRRL_ 0 0 0 ENST00000453038.5_1_2:220040976-220041837:-|nuORF;ENST00000360507.9_1_2:220040976-220041644:-|nuORF ENST00000453038.5_1_2:220040976-220041837:-|nuORF ENST00000453038.5_1_2:220040976-220041837:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 405.932861328125 3 406.266902 1215.77888 -0.036538 -1.4844E-05 0.90284 0.0003668 0.86631 0.00035195 406.26732995908463 37.214 0.24821 37.214 37.118 37.366 0 37 25 2 0 0 0 0.12545 1 6982 6982 0 0 1 124180 38133 6320 24121 24132 43316 43316 0.17961817113132383 RRHLLPRRL 9 Unmodified _RRHLLPRRL_ 0 0 0 ENST00000453038.5_1_2:220040976-220041837:-|nuORF;ENST00000360507.9_1_2:220040976-220041644:-|nuORF ENST00000453038.5_1_2:220040976-220041837:-|nuORF ENST00000453038.5_1_2:220040976-220041837:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.266845703125 3 406.266902 1215.77888 -0.46511 -0.00018896 1.0516 0.00042721 0.58644 0.00023825 406.26725968947926 31.642 0.49393 35.371 35.28 35.774 3.7293 49 37 2 0 0 0 0.50328 1 5336 5336 0.26902 0 1 64806 38134 6320 24121 24132 43317 43317 0.17961817113132383 RRHRKKCKK 9 Unmodified _RRHRKKCKK_ 0 0 0 REV__L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|96|2|sense REV__L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|96|2|sense MSMS UPN48_class_I_Rep_1 5 620.3881225585938 2 620.3882 1238.76185 NaN NaN NaN NaN NaN NaN NaN 107.36 1 110.99 110.49 111.49 3.6299 0 0 0 0.4029 1 25881 25881 0 0 1 + 38135 24089 24122 24133 43318 43318 0.1520157323566309 RRHRPVPG 8 Unmodified _RRHRPVPG_ 0 0 0 ENST00000243286.7_1_X:102862879-102862993:+|nuORF;ENST00000372627.9_1_X:102862900-102863565:+|nuORF ENST00000243286.7_1_X:102862879-102862993:+|nuORF ENST00000243286.7_1_X:102862879-102862993:+|nuORF MSMS UPN46_class_I_Rep_3 1 487.79107666015625 2 487.791384 973.568215 NaN NaN NaN NaN NaN NaN NaN 81.336 1 81.336 80.836 81.836 0 0 0 0 0.40738 1 19203 19203 0.79363 0.10326 1 38136 5902 24123 24134 43319 43319 0.0803735979108069 RRHRPVPG 8 Unmodified _RRHRPVPG_ 0 0 0 ENST00000243286.7_1_X:102862879-102862993:+|nuORF;ENST00000372627.9_1_X:102862900-102863565:+|nuORF ENST00000243286.7_1_X:102862879-102862993:+|nuORF ENST00000243286.7_1_X:102862879-102862993:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.7925109863281 2 487.791384 973.568215 0.18092 8.8252E-05 1.955 0.00095363 2.1359 0.0010419 487.79192990158776 74.934 0.86096 78.424 77.821 78.682 3.49 125 91 2 0 0 0 0.82752 1 17649 17649 0.79363 0.10326 1 180270 38137 5902 24123 24134 43320 43320 0.0803735979108069 RRHRRNKQ 8 Unmodified _RRHRRNKQ_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MULTI-MSMS UPN46_class_I_Rep_3 1 575.843017578125 2 575.842471 1149.67039 0.49511 0.00028511 0.3816 0.00021974 0.87672 0.00050485 575.8424387984546 87.418 0.35322 87.418 87.326 87.679 0 74 31 3 0 0 0 0.82752 1 20977 20977 0.69038 0 1 630570 + 38138 21290 24124 24135 43321 43321 0.10154025862675553 RRHRRNKQ 8 Unmodified _RRHRRNKQ_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MSMS UPN46_class_I_Rep_3 1 575.8431396484375 2 575.842471 1149.67039 NaN NaN NaN NaN NaN NaN NaN 85.678 1 85.678 85.178 86.178 0 0 0 0 0.40746 1 20451 20451 0.69038 0 1 + 38139 21290 24124 24135 43322 43322 0.10154025862675553 RRHRRRRRREG 11 Unmodified _RRHRRRRRREG_ 0 0 0 ENST00000419807.5_3_2:44395715-44396385:+|nuORF ENST00000419807.5_3_2:44395715-44396385:+|nuORF ENST00000419807.5_3_2:44395715-44396385:+|nuORF MSMS UPN48_class_I_Rep_2 6 530.9859008789062 3 530.988084 1589.94242 NaN NaN NaN NaN NaN NaN NaN 98.967 1 102.74 102.24 103.24 3.7707 0 0 0 0.38417 1 23509 23509 0.094841 0.011491 1 38140 6673 24125 24136 43323 43323 0.17104807936698307 RRHRRRRVVAQ 11 Unmodified _RRHRRRRVVAQ_ 0 0 0 REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.31201171875 3 497.310164 1488.90866 NaN NaN NaN NaN NaN NaN NaN 83.391 1 86.978 86.478 87.478 3.5871 0 0 0 0.38417 1 19942 19942 0.094841 0 1 + 38141 22680 24126 24137 43324 43324 0.18376386444947457 RRHTEKFQ 8 Unmodified _RRHTEKFQ_ 0 0 0 REV__MamRep137_dup128|chr1:211300656-211301094:+|2.243730409558707|0.3542092685482128|2.66|151.0|19|1|anti-sense REV__MamRep137_dup128|chr1:211300656-211301094:+|2.243730409558707|0.3542092685482128|2.66|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 551.2994384765625 2 551.299239 1100.58392 NaN NaN NaN NaN NaN NaN NaN 47.334 1 51.07 50.57 51.57 3.7361 0 0 0 0.40625 1 9340 9340 2.3027 0 1 + 38142 31049 24127 24138 43325 43325 0.03765601517466166 RRHVTDGLLK 10 Unmodified _RRHVTDGLLK_ 0 0 0 nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217 nc|ENSG00000120549|Q5T5P2-4|KIAA1217 nc|ENSG00000120549|Q5T5P2-4|KIAA1217 MULTI-MSMS UPN47_class_I_Rep_2 3 597.8560791015625 2 597.856921 1193.69929 0.53383 0.00031915 -0.74772 -0.00044703 -0.21389 -0.00012788 597.8560335386833 83.491 0.48811 86.903 86.655 87.143 3.4116 85 59 2 0 0 0 0.56354 1 20837 20837 1.3295 0 1 91040 38143 2327 24128 24139 43326 43326 0.11018705648439209 RRHVTDGLLK 10 Unmodified _RRHVTDGLLK_ 0 0 0 nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217 nc|ENSG00000120549|Q5T5P2-4|KIAA1217 nc|ENSG00000120549|Q5T5P2-4|KIAA1217 MULTI-MSMS UPN48_class_I_Rep_3 7 597.856689453125 2 597.856921 1193.69929 0.55911 0.00033427 -0.88823 -0.00053104 -0.32912 -0.00019677 597.8560645566207 83.197 0.92611 86.903 86.469 87.395 3.7066 161 121 2 0 0 0 0.56354 1 19758 19758 1.3295 0.13619 1 147630 38144 2327 24128 24139 43327 43327 0.11018705648439209 RRHWRPISIT 10 Unmodified _RRHWRPISIT_ 0 0 0 L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|8|1|sense L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|8|1|sense L1PA13_dup5068|chrX:55958858-55960234:+|1.036633025689108|0.0105310663124214|6.62|147.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 441.25848388671875 3 441.258184 1320.75272 NaN NaN NaN NaN NaN NaN NaN 30.094 1 30.094 29.594 30.594 0 0 0 0 0.53105 1 4854 4854 1.7423 0 1 38145 13761 24129 24140 43328 43328 0.10517503150981611 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 80.861 1 84.349 83.849 84.849 3.4874 0 0 0 0.40604 1 20157 20157 2.5775 0 1 + 38146 23269 24130 24141 43329 43329 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 71.164 1 74.454 73.954 74.954 3.2899 0 0 0 0.40604 1 17376 17376 2.5775 0 1 + 38147 23269 24130 24141 43330 43330 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 76.094 1 79.416 78.916 79.916 3.3216 0 0 0 0.40604 1 18822 18822 2.5775 0 1 + 38148 23269 24130 24141 43331 43331 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 77.565 1 80.896 80.396 81.396 3.3315 0 0 0 0.40604 1 19247 19247 2.5775 0 1 + 38149 23269 24130 24141 43332 43332 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79510498046875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 79.671 1 83.026 82.526 83.526 3.3554 0 0 0 0.40604 1 19840 19840 2.5775 0 1 + 38150 23269 24130 24141 43333 43333 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7954406738281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 80.975 1 84.359 83.859 84.859 3.3839 0 0 0 0.40604 1 20163 20163 2.5775 0 1 + 38151 23269 24130 24141 43334 43334 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7958679199219 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.986 1 92.438 91.938 92.938 3.4525 0 0 0 0.40604 1 22115 22115 2.5775 0 1 + 38152 23269 24130 24141 43335 43335 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 95.704 1 99.179 98.679 99.679 3.4753 0 0 0 0.40604 1 23549 23549 2.5775 0 1 + 38153 23269 24130 24141 43336 43336 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7958984375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 75.349 1 78.595 78.095 79.095 3.2464 0 0 0 0.40604 1 18688 18688 2.5775 0 1 + 38154 23269 24130 24141 43337 43337 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 81.976 1 85.299 84.799 85.799 3.3231 0 0 0 0.40604 1 20538 20538 2.5775 0 1 + 38155 23269 24130 24141 43338 43338 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7957763671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 84.506 1 87.867 87.367 88.367 3.3615 0 0 0 0.40604 1 21209 21209 2.5775 0 1 + 38156 23269 24130 24141 43339 43339 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7957763671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 87.392 1 90.772 90.272 91.272 3.3801 0 0 0 0.40604 1 21897 21897 2.5775 0 1 + 38157 23269 24130 24141 43340 43340 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.938 1 92.331 91.831 92.831 3.3931 0 0 0 0.40604 1 22306 22306 2.5775 0 1 + 38158 23269 24130 24141 43341 43341 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 89.306 1 92.699 92.199 93.199 3.3931 0 0 0 0.40604 1 22393 22393 2.5775 0 1 + 38159 23269 24130 24141 43342 43342 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 92.218 1 95.621 95.121 96.121 3.4034 0 0 0 0.40604 1 23031 23031 2.5775 0 1 + 38160 23269 24130 24141 43343 43343 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.795166015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 92.624 1 96.028 95.528 96.528 3.4034 0 0 0 0.40604 1 23120 23120 2.5775 0 1 + 38161 23269 24130 24141 43344 43344 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79498291015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 92.941 1 96.346 95.846 96.846 3.4052 0 0 0 0.40604 1 23188 23188 2.5775 0 1 + 38162 23269 24130 24141 43345 43345 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 87.283 1 90.901 90.401 91.401 3.6187 0 0 0 0.40604 1 20915 20915 2.5775 0 1 + 38163 23269 24130 24141 43346 43346 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_1 5 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.123 1 91.746 91.246 92.246 3.6229 0 0 0 0.40604 1 21134 21134 2.5775 0 1 + 38164 23269 24130 24141 43347 43347 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7957763671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 76.749 1 80.361 79.861 80.861 3.6116 0 0 0 0.40604 1 18130 18130 2.5775 0 1 + 38165 23269 24130 24141 43348 43348 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 77.273 1 80.885 80.385 81.385 3.6116 0 0 0 0.40604 1 18280 18280 2.5775 0 1 + 38166 23269 24130 24141 43349 43349 0.10392288636899139 RRIANSLL 8 Unmodified _RRIANSLL_ 0 0 0 REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense REV__ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_3 7 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 85.543 1 89.314 88.814 89.814 3.7701 0 0 0 0.40604 1 20286 20286 2.5775 0 1 + 38167 23269 24130 24141 43350 43350 0.10392288636899139 RRIEKGAL 8 Unmodified _RRIEKGAL_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MSMS UPN47_class_I_Rep_1 2 471.7959899902344 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 87.929 1 91.585 91.085 92.085 3.6563 0 0 0 0.40157 1 21982 21982 7.2892 0 1 38168 1241 24131 24142 43351 43351 0.10392288636899139 RRIEKGAL 8 Unmodified _RRIEKGAL_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.54 1 91.933 91.433 92.433 3.3931 0 0 0 0.3903 1 22207 22207 11.64 1.5664 1 38169 1241 24131 24142 43352 43352 0.10392288636899139 RRIGVYLA 8 Unmodified _RRIGVYLA_ 0 0 0 HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|307|3|anti-sense HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|307|3|anti-sense HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|307|3|anti-sense MSMS UPN47_class_I_Rep_2 3 474.282470703125 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 110.03 1 113.56 113.06 114.06 3.5307 0 0 0 0.40738 1 26803 26803 0.79363 0 1 38170 8142 24132 24143 43353 43353 0.09581190125209105 RRILADSI 8 Unmodified _RRILADSI_ 0 0 0 REV__nc|ENSG00000100505|Q9C026-5|TRIM9 REV__nc|ENSG00000100505|Q9C026-5|TRIM9 MULTI-MSMS UPN48_class_I_Rep_1 5 472.2874450683594 2 472.287808 942.561064 0.098737 4.6632E-05 -0.0080681 -3.8105E-06 0.090669 4.2822E-05 472.28773672819216 86.651 0.48625 90.264 90.187 90.673 3.613 112 65 2 0 0 0 0.82752 1 20853 20853 0.69038 0 1 726770 + 38171 18118 24133 24144 43354 43354 0.08748582399982752 RRINRTVI 8 Unmodified _RRINRTVI_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS UPN47_class_I_Rep_2 3 514.3292236328125 2 514.327799 1026.64105 NaN NaN NaN NaN NaN NaN NaN 65.987 1 69.246 68.746 69.746 3.2588 0 0 0 0.40501 1 15825 15825 3.9444 0 1 38172 3476 24134 24145 43355 43355 0.12879068793859005 RRINWYNL 8 Unmodified _RRINWYNL_ 0 0 0 L1ME4a_dup18129|chr9:77774852-77775409:-|1.1643648620576947|0.012757901973095|6.51|151.0|11|2|sense L1ME4a_dup18129|chr9:77774852-77775409:-|1.1643648620576947|0.012757901973095|6.51|151.0|11|2|sense L1ME4a_dup18129|chr9:77774852-77775409:-|1.1643648620576947|0.012757901973095|6.51|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.8114013671875 2 567.811982 1133.60941 0.21913 0.00012442 -1.1845 -0.00067255 -0.96534 -0.00054813 567.8111580315096 49.861 0.48576 53.52 53.082 53.568 3.6592 46 28 2 0 0 0 0.82752 1 10872 10872 7.9102 0.3012 1 109710 38173 12858 24135 24146 43356 43356 0.04795076039886226 RRIRLALV 8 Unmodified _RRIRLALV_ 0 0 0 ENST00000609682.1_1_3:101395365-101395752:+|nuORF ENST00000609682.1_1_3:101395365-101395752:+|nuORF ENST00000609682.1_1_3:101395365-101395752:+|nuORF MSMS UPN47_class_I_Rep_1 2 499.2752380371094 2 498.843085 995.671617 NaN NaN NaN NaN NaN NaN NaN 63.37 1 66.729 66.229 67.229 3.3595 0 0 0 0.40798 1 14990 14990 0 0 1 38174 7701 24136 24147 43357 43357 0.1736084717886115 RRIRLHPY 8 Unmodified _RRIRLHPY_ 0 0 0 L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|76|2|sense L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|76|2|sense L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|76|2|sense MSMS UPN47_class_I_Rep_3 4 556.2485961914062 2 555.835791 1109.65703 NaN NaN NaN NaN NaN NaN NaN 14.537 1 17.906 17.406 18.406 3.3697 0 0 0 0.40738 1 570 570 0.79363 0 1 38175 9969 24137 24148 43358 43358 0.10658775030742618 RRIRYTTK 8 Unmodified _RRIRYTTK_ 0 0 0 REV__L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|39|2|sense REV__L1MB5_dup1687|chr3:136936340-136938298:-|2.542143222325808|0.069314245020603|5.2|151.0|39|2|sense MSMS UPN47_class_I_Rep_2 3 547.3329467773438 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 89.11 1 92.563 92.063 93.063 3.4525 0 0 0 0.40659 1 22145 22145 1.8442 0 1 + 38176 26038 24138 24149 43359 43359 0.108990514482457 RRISKLLGTLG 11 Unmodified _RRISKLLGTLG_ 0 0 0 REV__nc|ENSG00000196547|P49641-2|MAN2A2 REV__nc|ENSG00000196547|P49641-2|MAN2A2 MSMS UPN47_class_I_Rep_3 4 405.2635498046875 3 405.262823 1212.76664 NaN NaN NaN NaN NaN NaN NaN 95.832 1 99.241 98.741 99.741 3.4095 0 0 0 0.38417 1 23808 23808 0.50596 0.23694 1 + 38177 21045 24139 24150 43360 43360 0.16876735859409564 RRISNRGWN 9 Unmodified _RRISNRGWN_ 0 0 0 REV__L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|33|1|sense REV__L1PA6_dup5155|chr14:75920273-75924289:-|2.268508238854341|0.1481004555827548|3.94|151.0|33|1|sense MSMS UPN47_class_I_Rep_3 4 579.816650390625 2 579.815587 1157.61662 NaN NaN NaN NaN NaN NaN NaN 44.552 1 47.796 47.296 48.296 3.2441 0 0 0 0.3967 1 9354 9354 1.4819 0 1 + 38178 29929 24140 24151 43361 43361 0.044118086403159396 RRKDAEYWL 9 Unmodified _RRKDAEYWL_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN48_class_I_Rep_2 6 618.8302612304688 2 618.827829 1235.64111 NaN NaN NaN NaN NaN NaN NaN 46.151 1 49.909 49.409 50.409 3.7579 0 0 0 0.39428 1 8986 8986 2.0598 0 1 + 38179 20513 24141 24152 43362 43362 0.032710240031974536 RRKDFCRI 8 Unmodified _RRKDFCRI_ 0 0 0 ENST00000393328.6_1_17:47677280-47677397:-|nuORF ENST00000393328.6_1_17:47677280-47677397:-|nuORF ENST00000393328.6_1_17:47677280-47677397:-|nuORF MSMS UPN48_class_I_Rep_3 7 547.3053588867188 2 547.30601 1092.59747 NaN NaN NaN NaN NaN NaN NaN 33.623 1 37.302 36.802 37.802 3.6797 0 0 0 0.40746 1 5251 5251 0.69038 0 1 38180 6534 24142 24153 43363 43363 0.05487136025044492 RRKDKIHMIIS 11 Unmodified _RRKDKIHMIIS_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|186|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|186|3|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|186|3|sense MSMS UPN47_class_I_Rep_1 2 466.26385498046875 3 466.278367 1395.81327 NaN NaN NaN NaN NaN NaN NaN 30.733 1 34.478 33.978 34.978 3.7449 0 0 0 0.3803 1 5063 5063 7.0371 2.9205 1 38181 9294 24143 24154 43364 43364 0.13119852419049494 RRKEEYQL 8 Unmodified _RRKEEYQL_ 0 0 0 ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|91|1|anti-sense ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|91|1|anti-sense ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|91|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.3069458007812 2 561.306729 1120.59891 0.51355 0.00028826 -0.56675 -0.00031812 -0.053195 -2.9859E-05 561.3063876238544 28.952 0.43006 32.583 32.321 32.751 3.6316 73 43 2 0 0 0 0.82752 1 3995 3995 2.3027 0 1 62553 38182 7747 24144 24155 43365 43365 0.04343048594796528 RRKELLLLRK 10 Unmodified _RRKELLLLRK_ 0 0 0 REV__L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|49|2|sense REV__L1M1_dup2903|chr5:59921778-59924894:+|1.5328384701894753|0.0468452314746414|5.03|148.0|49|2|sense MSMS UPN47_class_I_Rep_1 2 442.3009033203125 3 442.301501 1323.88267 NaN NaN NaN NaN NaN NaN NaN 82.022 1 85.534 85.034 86.034 3.5122 0 0 0 0.53105 1 20485 20485 0.69767 0.19171 1 + 38183 24065 24145 24156 43366 43366 0.23368679430109296 RRKERAPPL 9 Unmodified _RRKERAPPL_ 0 0 0 HERV15-int_dup74|chr16:20676895-20677481:+|1.0905794871436938|0.2057840023413653|2.41|148.0|12|2|sense HERV15-int_dup74|chr16:20676895-20677481:+|1.0905794871436938|0.2057840023413653|2.41|148.0|12|2|sense HERV15-int_dup74|chr16:20676895-20677481:+|1.0905794871436938|0.2057840023413653|2.41|148.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.8460693359375 2 561.846356 1121.67816 0.44408 0.0002495 -0.98739 -0.00055476 -0.54331 -0.00030526 561.8457331846372 87.706 0.32281 91.516 91.396 91.719 3.8104 51 39 2 0 0 0 0.50088 1 20836 20836 0.52476 0 1 128970 38184 8003 24146 24157 43367 43367 0.12218740339585565 RRKERRIKWT 10 Unmodified _RRKERRIKWT_ 0 0 0 L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|5|1|sense;L1PA8_dup5551|chr10:74347141-74353587:+|9.206058933214868|0.165036666181953|5.8|151.0|36|1|sense;L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|76|2|sense;L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|82|2|sense;L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|131|3|sense;L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|33|1|sense L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|5|1|sense L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 476.6236267089844 3 476.960138 1427.85858 NaN NaN NaN NaN NaN NaN NaN 104.98 1 108.72 108.22 109.22 3.7395 0 0 0 0.53105 1 25778 25778 0.62683 0.12087 1 38185 13596 24147 24158 43368 43368 0.16176838996420884 RRKERRIR 8 Unmodified _RRKERRIR_ 0 0 0 L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense MSMS UPN47_class_I_Rep_1 2 585.3746948242188 2 585.376146 1168.73774 NaN NaN NaN NaN NaN NaN NaN 37.961 1 41.626 41.126 42.126 3.6652 0 0 0 0.40746 1 7264 7264 0.69038 0 1 38186 13631 24148 24159 43369 43369 0.1601205607362317 RRKERRIR 8 Unmodified _RRKERRIR_ 0 0 0 L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense MSMS UPN47_class_I_Rep_1 2 585.7808227539062 2 585.376146 1168.73774 NaN NaN NaN NaN NaN NaN NaN 38.204 1 41.869 41.369 42.369 3.6652 0 0 0 0.40746 1 7337 7337 0.69038 0 1 38187 13631 24148 24159 43370 43370 0.1601205607362317 RRKERRIR 8 Unmodified _RRKERRIR_ 0 0 0 L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense MSMS UPN47_class_I_Rep_2 3 585.3748168945312 2 585.376146 1168.73774 NaN NaN NaN NaN NaN NaN NaN 37.984 1 41.372 40.872 41.872 3.3879 0 0 0 0.40746 1 7305 7305 0.69038 0 1 38188 13631 24148 24159 43371 43371 0.1601205607362317 RRKERRIR 8 Unmodified _RRKERRIR_ 0 0 0 L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|127|3|sense MSMS UPN47_class_I_Rep_3 4 585.3750610351562 2 585.376146 1168.73774 NaN NaN NaN NaN NaN NaN NaN 37.885 1 41.127 40.627 41.627 3.2414 0 0 0 0.40746 1 7315 7315 0.69038 0 1 38189 13631 24148 24159 43372 43372 0.1601205607362317 RRKEWYMA 8 Unmodified _RRKEWYMA_ 0 0 0 REV__ENSG00000165030|ENST00000297689|NFIL3 REV__ENSG00000165030|ENST00000297689|NFIL3 MSMS UPN48_class_I_Rep_3 7 570.274169921875 2 570.292568 1138.57058 NaN NaN NaN NaN NaN NaN NaN 31.519 1 35.221 34.721 35.721 3.7015 0 0 0 0.40738 1 4676 4676 0.79363 0 1 + 38190 20098 24149 24160 43373 43373 0.006840274138539826 RRKEWYMA 8 Unmodified _RRKEWYMA_ 0 0 0 REV__ENSG00000165030|ENST00000297689|NFIL3 REV__ENSG00000165030|ENST00000297689|NFIL3 MSMS UPN48_class_I_Rep_3 7 570.2913818359375 2 570.292568 1138.57058 NaN NaN NaN NaN NaN NaN NaN 32.685 1 36.374 35.874 36.874 3.6896 0 0 0 0.40738 1 4997 4997 0.79363 0 1 + 38191 20098 24149 24160 43374 43374 0.006840274138539826 RRKFLTRIRQ 10 Unmodified _RRKFLTRIRQ_ 0 0 0 REV__L1PA7_dup3437|chr4:102329643-102333176:+|1.9858265844019416|0.0352729418273434|5.82|151.0|25|1|sense REV__L1PA7_dup3437|chr4:102329643-102333176:+|1.9858265844019416|0.0352729418273434|5.82|151.0|25|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 458.6240539550781 3 458.624866 1372.85277 0.18121 8.3109E-05 -1.9352 -0.00088751 -1.7539 -0.0008044 458.6239650354846 102.37 0.071335 106.15 106.12 106.19 3.776 12 8 2 0 0 0 0.56523 1 24194 24194 0.13989 0 1 398020 + 38192 30073 24150 24161 43375 43375 0.1812574048476563 RRKGGVGVGF 10 Unmodified _RRKGGVGVGF_ 0 0 0 REV__Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|31|2|sense REV__Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|31|2|sense MSMS UPN48_class_I_Rep_1 5 516.8082275390625 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 89.184 1 92.809 92.309 93.309 3.6255 0 0 0 0.53105 1 21408 21408 1.6526 0 1 + 38193 32642 24151 24162 43376 43376 0.08431093385479471 RRKGWGLS 8 Unmodified _RRKGWGLS_ 0 0 0 REV__MER5B_dup24509|chr22:24401764-24401913:-|1.0695678417077623|0.0466108645669418|4.52|151.0|12|3|anti-sense REV__MER5B_dup24509|chr22:24401764-24401913:-|1.0695678417077623|0.0466108645669418|4.52|151.0|12|3|anti-sense MSMS UPN47_class_I_Rep_1 2 480.28118896484375 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 20.417 1 24.061 23.561 24.561 3.6436 0 0 0 0.40746 1 2047 2047 0.69038 0 1 + 38194 31477 24152 24163 43377 43377 0.0651513532267245 RRKHKPPK 8 Unmodified _RRKHKPPK_ 0 0 0 nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2 nc|ENSG00000077522|P35609-2|ACTN2 nc|ENSG00000077522|P35609-2|ACTN2 MULTI-SECPEP UPN46_class_I_Rep_3 1 523.8396606445312 2 523.838334 1045.66212 0.27046 0.00014168 2.4256 0.0012706 2.6961 0.0014123 523.8395818142978 65.77 0.099289 65.77 65.74 65.839 0 9 8 2 0 0 0 0.72333 1 14886 14886 2.3027 0.4585 1 177320 38195 1175 24153 24164 43378 43378 0.14111078893370177 RRKHMVFL 8 Unmodified _RRKHMVFL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MSMS UPN48_class_I_Rep_3 7 543.8189697265625 2 543.821295 1085.62804 NaN NaN NaN NaN NaN NaN NaN 43.54 1 47.179 46.679 47.679 3.6385 0 0 0 0.40581 1 8114 8114 2.8892 0 1 38196 3060 24154 24165 43379 43379 0.08864914410105484 RRKHQLLW 8 Unmodified _RRKHQLLW_ 0 0 0 REV__L1MC5_dup9101|chr10:891080-891666:+|1.0749393265363318|0.0205895762780722|5.71|151.0|15|3|sense REV__L1MC5_dup9101|chr10:891080-891666:+|1.0749393265363318|0.0205895762780722|5.71|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 568.8438110351562 2 568.843616 1135.67268 NaN NaN NaN NaN NaN NaN NaN 112.55 1 116.18 115.68 116.68 3.6321 0 0 0 0.40746 1 27319 27319 0.69038 0.16561 1 + 38197 27096 24155 24166 43380 43380 0.11027061547792982 RRKIISEA 8 Unmodified _RRKIISEA_ 0 0 0 REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.8027038574219 2 486.801083 971.587613 0.23218 0.00011303 2.7788 0.0013527 3.011 0.0014658 486.8025058277791 89.629 0.042198 93.303 93.283 93.325 3.6738 5 3 2 0 0 0 0.82752 1 22419 22419 2.3027 0 1 52338 + 38198 20795 24156 24167 43381 43381 0.10068271291333986 RRKIISEA 8 Unmodified _RRKIISEA_ 0 0 0 REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.8030700683594 2 486.801083 971.587613 NaN NaN NaN NaN NaN NaN NaN 88.554 1 92.21 91.71 92.71 3.6563 0 0 0 0.39996 1 22144 22144 7.9102 0 1 + 38199 20795 24156 24167 43382 43382 0.10068271291333986 RRKIISEA 8 Unmodified _RRKIISEA_ 0 0 0 REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.802734375 2 486.801083 971.587613 NaN NaN NaN NaN NaN NaN NaN 88.702 1 92.359 91.859 92.859 3.6563 0 0 0 0.39996 1 22182 22182 7.9102 0 1 + 38200 20795 24156 24167 43383 43383 0.10068271291333986 RRKIISEA 8 Unmodified _RRKIISEA_ 0 0 0 REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.8023376464844 2 486.801083 971.587613 NaN NaN NaN NaN NaN NaN NaN 89.209 1 92.883 92.383 93.383 3.6738 0 0 0 0.40625 1 22302 22302 2.3027 0 1 + 38201 20795 24156 24167 43384 43384 0.10068271291333986 RRKIISEA 8 Unmodified _RRKIISEA_ 0 0 0 REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF MSMS UPN47_class_I_Rep_2 3 486.8029479980469 2 486.801083 971.587613 NaN NaN NaN NaN NaN NaN NaN 88.462 1 91.909 91.409 92.409 3.4471 0 0 0 0.39996 1 21998 21998 7.9102 0 1 + 38202 20795 24156 24167 43385 43385 0.10068271291333986 RRKIISEA 8 Unmodified _RRKIISEA_ 0 0 0 REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF REV__ENST00000469420.1_1_22:39267340-39268216:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 486.801083 971.587613 0.23218 0.00011303 2.7788 0.0013527 3.011 0.0014658 486.8025058277791 89.629 0.042198 93.303 93.283 93.325 3.6738 0 0 NaN 2.3027 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 52338 + 38203 20795 24156 24167 0.10068271291333986 RRKILVKN 8 Unmodified _RRKILVKN_ 0 0 0 nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2 nc|ENSG00000162437|Q9HCJ3-2|RAVER2 nc|ENSG00000162437|Q9HCJ3-2|RAVER2 MSMS UPN46_class_I_Rep_3 1 513.9194946289062 2 513.848368 1025.68218 NaN NaN NaN NaN NaN NaN NaN 68.05 1 68.05 67.55 68.55 0 0 0 0 0.40746 1 15519 15519 0.69038 0 1 38204 3933 24157 24168 43386 43386 0.1703682983334147 RRKILWITK 9 Unmodified _RRKILWITK_ 0 0 0 REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|189|1|anti-sense REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|189|1|anti-sense MSMS UPN48_class_I_Rep_1 5 405.2684631347656 3 405.267909 1212.7819 NaN NaN NaN NaN NaN NaN NaN 99.793 1 103.4 102.9 103.9 3.6065 0 0 0 0.40177 1 24090 24090 0.26902 0 1 + 38205 23661 24158 24169 43387 43387 0.18401647447262803 RRKKEEEE 8 Unmodified _RRKKEEEE_ 0 0 0 ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF MSMS UPN47_class_I_Rep_1 2 552.2935180664062 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 97.974 1 101.76 101.26 102.26 3.7861 0 0 0 0.40604 1 24262 24262 2.5775 0 1 38206 6861 24159 24170 43388 43388 0.025901543525151283 RRKKEEEE 8 Unmodified _RRKKEEEE_ 0 0 0 ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.2931518554688 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 97.635 1 101.12 100.62 101.62 3.4836 0 0 0 0.40604 1 23958 23958 2.5775 0 1 38207 6861 24159 24170 43389 43389 0.025901543525151283 RRKKEEEE 8 Unmodified _RRKKEEEE_ 0 0 0 ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF ENST00000461597.1_1_1:156260048-156262795:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.2938232421875 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 98.008 1 101.49 100.99 101.99 3.4836 0 0 0 0.40604 1 24039 24039 2.5775 0 1 38208 6861 24159 24170 43390 43390 0.025901543525151283 RRKKKFLLVLL 11 Unmodified _RRKKKFLLVLL_ 0 0 0 MER44C_dup358|chr6:30321343-30322091:-|1.760874706431112|0.1158604251827759|3.93|151.0|21|3|sense MER44C_dup358|chr6:30321343-30322091:-|1.760874706431112|0.1158604251827759|3.93|151.0|21|3|sense MER44C_dup358|chr6:30321343-30322091:-|1.760874706431112|0.1158604251827759|3.93|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 471.7964782714844 3 471.99753 1412.97076 NaN NaN NaN NaN NaN NaN NaN 74.013 1 74.013 73.513 74.513 0 0 0 0 0.38417 1 17166 17166 0.094841 0 1 38209 15985 24160 24171 43391 43391 0.2807930002074954 RRKKKKKKALA 11 Unmodified _RRKKKKKKALA_ 0 0 0 REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|5|2|sense REV__L1MA9_dup11842|chr11:117040836-117041061:-|1.2484493666928471|0.0101371159112275|6.94|151.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 452.26904296875 3 452.320895 1353.94086 NaN NaN NaN NaN NaN NaN NaN 118.05 1 121.53 121.03 122.03 3.4822 0 0 0 0.38417 1 28870 28870 0 0 1 + 38210 25595 24161 24172 43392 43392 0.2780436107541391 RRKKKVKEV 9 Unmodified _RRKKKVKEV_ 0 0 0 nc|ENSG00000087206|Q96RL1-5|UIMC1;ENST00000417486.6_1_5:176397643-176409616:-|nuORF;nc|ENSG00000087206|Q96RL1-2|UIMC1;ENSG00000087206|ENST00000511320|UIMC1 nc|ENSG00000087206|Q96RL1-5|UIMC1 nc|ENSG00000087206|Q96RL1-5|UIMC1 MSMS UPN47_class_I_Rep_2 3 585.894287109375 2 585.893306 1169.77206 NaN NaN NaN NaN NaN NaN NaN 61.752 1 65.011 64.511 65.511 3.2594 0 0 0 0.4007 1 14539 14539 0.52476 0 1 38211 1294 24162 24173 43393 43393 0.19396459441895786 RRKKLLMMR 9 Unmodified _RRKKLLMMR_ 0 0 0 ENST00000344293.5_1_10:7866412-8006047:+|nuORF ENST00000344293.5_1_10:7866412-8006047:+|nuORF ENST00000344293.5_1_10:7866412-8006047:+|nuORF MSMS UPN48_class_I_Rep_1 5 616.3843383789062 2 616.383737 1230.75292 NaN NaN NaN NaN NaN NaN NaN 57.716 1 61.21 60.71 61.71 3.4942 0 0 0 0.4007 1 12529 12529 0.52476 0.066424 1 38212 6252 24163 24174 43394 43394 0.14677463554971837 RRKKNGYGK 9 Unmodified _RRKKNGYGK_ 0 0 0 L1MEf_dup2824|chr4:79917722-79919155:+|1.043600077797191|0.067900297134812|3.94|150.0|56|3|sense L1MEf_dup2824|chr4:79917722-79919155:+|1.043600077797191|0.067900297134812|3.94|150.0|56|3|sense L1MEf_dup2824|chr4:79917722-79919155:+|1.043600077797191|0.067900297134812|3.94|150.0|56|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 553.8302612304688 2 553.830706 1105.64686 0.39294 0.00021762 -1.1261 -0.00062366 -0.73314 -0.00040604 553.8300229718009 93.453 0.27715 97.344 97.312 97.589 3.8914 56 33 2 0 0 0 0.48643 1 22153 22153 2.0598 0 1 198310 38213 13262 24164 24175 43395 43395 0.09826167305527633 RRKKRKKKRKK 11 Unmodified _RRKKRKKKRKK_ 0 0 0 ENST00000216190.12_1_22:36906978-36907630:-|nuORF ENST00000216190.12_1_22:36906978-36907630:-|nuORF ENST00000216190.12_1_22:36906978-36907630:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.919677734375 3 514.03386 1539.07975 NaN NaN NaN NaN NaN NaN NaN 50.133 1 50.133 49.633 50.633 0 0 0 0 0.38417 1 10580 10580 0.094841 0 1 38214 5861 24165 24176 43396 43396 0.3317732376353888 RRKKRKTK 8 Unmodified _RRKKRKTK_ 0 0 0 REV__ENSG00000153140|ENST00000283122|CETN3 REV__ENSG00000153140|ENST00000283122|CETN3 MSMS UPN47_class_I_Rep_2 3 550.8797607421875 2 550.877991 1099.74143 NaN NaN NaN NaN NaN NaN NaN 108.57 1 112.1 111.6 112.6 3.5333 0 0 0 0.40753 1 26345 26345 0.6015 0 1 + 38215 19703 24166 24177 43397 43397 0.19554725847501686 RRKKRLRVLPK 11 Unmodified _RRKKRLRVLPK_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense MSMS UPN46_class_I_Rep_3 1 484.0056457519531 3 484.003678 1448.9892 NaN NaN NaN NaN NaN NaN NaN 74.628 1 74.628 74.128 75.128 0 0 0 0 0.38417 1 17320 17320 0 0 1 + 38216 24147 24167 24178 43398 43398 0.28266854715297995 RRKKRLRVLPK 11 Unmodified _RRKKRLRVLPK_ 0 0 0 REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense REV__L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|51|1|sense MSMS UPN46_class_I_Rep_3 1 484.0053405761719 3 484.003678 1448.9892 NaN NaN NaN NaN NaN NaN NaN 75.097 1 75.097 74.597 75.597 0 0 0 0 0.38417 1 17441 17441 0 0 1 + 38217 24147 24167 24178 43399 43399 0.28266854715297995 RRKKRRWL 8 Unmodified _RRKKRRWL_ 0 0 0 REV__nc|ENSG00000196388|Q0VD86-2|INCA1 REV__nc|ENSG00000196388|Q0VD86-2|INCA1 MSMS UPN48_class_I_Rep_1 5 599.7680053710938 2 599.891432 1197.76831 NaN NaN NaN NaN NaN NaN NaN 33.572 1 37.092 36.592 37.592 3.5201 0 0 0 0.40798 1 5254 5254 0 0 1 + 38218 21035 24168 24179 43400 43400 0.17733834458704223 RRKKVFNRH 9 Unmodified _RRKKVFNRH_ 0 0 0 REV__ENSG00000143319|ENST00000368219|ISG20L2 REV__ENSG00000143319|ENST00000368219|ISG20L2 MSMS UPN46_class_I_Rep_3 1 620.8792114257812 2 620.878522 1239.74249 NaN NaN NaN NaN NaN NaN NaN 62.901 1 62.901 62.401 63.401 0 0 0 0 0.4007 1 14092 14092 0.52476 0.066424 1 + 38219 19436 24169 24180 43401 43401 0.13220940216410781 RRKKVIGWY 9 Unmodified _RRKKVIGWY_ 0 0 0 ENSG00000165660.8,ABRAXAS2,chr10,+,I3.1,124816613,124819383|41|6.45|5|intron;ENSG00000165660.8,ABRAXAS2,chr10,+,I3.1,124816613,124819383|41|6.45|3|intron;ENSG00000165660.8,ABRAXAS2,chr10,+,I3.1,124816613,124819383|41|6.45|4|intron;ENSG00000165660.8,ABRAXAS2,chr10,+,I3.1,124816613,124819383|41|6.45|2|intron;ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660.8,ABRAXAS2,chr10,+,I3.1,124816613,124819383|41|6.45|5|intron ENSG00000165660.8,ABRAXAS2,chr10,+,I3.1,124816613,124819383|41|6.45|5|intron MSMS UPN47_class_I_Rep_3 4 603.7343139648438 2 603.366924 1204.7193 NaN NaN NaN NaN NaN NaN NaN 73.644 1 76.88 76.38 77.38 3.2363 0 0 0 0.40038 1 18199 18199 0.6015 0 1 38220 4194 24170 24181 43402 43402 0.12512501379114838 RRKLAEFA 8 Unmodified _RRKLAEFA_ 0 0 0 REV__ENSG00000111046|ENST00000228641|MYF6 REV__ENSG00000111046|ENST00000228641|MYF6 MSMS UPN47_class_I_Rep_3 4 495.7806091308594 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 82.27 1 85.607 85.107 86.107 3.337 0 0 0 0.40625 1 20618 20618 2.3027 0 1 + 38221 18445 24171 24182 43403 43403 0.08184288636891779 RRKLAEFA 8 Unmodified _RRKLAEFA_ 0 0 0 REV__ENSG00000111046|ENST00000228641|MYF6 REV__ENSG00000111046|ENST00000228641|MYF6 MSMS UPN47_class_I_Rep_3 4 495.7805480957031 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.609 1 86.959 86.459 87.459 3.35 0 0 0 0.40625 1 20974 20974 2.3027 0 1 + 38222 18445 24171 24182 43404 43404 0.08184288636891779 RRKLEPITK 9 Unmodified _RRKLEPITK_ 0 0 0 L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|14|1|sense L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|14|1|sense L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.8637084960938 2 570.864215 1139.71388 -0.44101 -0.00025176 0.077834 4.4433E-05 -0.36318 -0.00020733 570.8640611907132 12.797 0.25387 16.17 16.081 16.335 3.3734 56 28 3 0 0 0 0.49187 1 175 175 1.4819 0 1 85187 38223 14442 24172 24183 43405 43405 0.14960777796591174 RRKLFVWY 8 Unmodified _RRKLFVWY_ 0 0 0 REV__L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|16|2|sense REV__L1M6_dup5034|chr17:10028477-10029436:+|1.0837211793928323|0.0184717023719486|5.87|150.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 584.3463745117188 2 584.342918 1166.67128 NaN NaN NaN NaN NaN NaN NaN 101.77 1 105.38 104.88 105.88 3.612 0 0 0 0.40746 1 24557 24557 0.69038 0.16561 1 + 38224 24725 24173 24184 43406 43406 0.0946142745904126 RRKLIRHYQ 9 Unmodified _RRKLIRHYQ_ 0 0 0 REV__nc|ENSG00000001167|P23511-2|NFYA REV__nc|ENSG00000001167|P23511-2|NFYA MSMS UPN46_class_I_Rep_3 1 635.4168090820312 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 93.92 1 93.92 93.42 94.42 0 0 0 0 0.4007 1 22776 22776 0.52476 0.12405 1 + 38225 17510 24174 24185 43407 43407 0.13417807013615857 RRKLKKGK 8 Unmodified _RRKLKKGK_ 0 0 0 HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|24|3|sense HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|24|3|sense HERVK14-int_dup127|chr7:30536570-30537268:+|2.312511210335332|0.3095460530237414|2.9|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 507.35699462890625 2 507.35636 1012.69817 NaN NaN NaN NaN NaN NaN NaN 86.561 1 86.561 86.061 87.061 0 0 0 0 0.40798 1 20694 20694 0 0 1 38226 8271 24175 24186 43408 43408 0.19232536070228434 RRKLKTIL 8 Unmodified _RRKLKTIL_ 0 0 0 L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 514.358642578125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 13.149 1 13.149 12.649 13.649 0 0 0 0 0.40798 1 308 308 0 0 1 38227 15309 24176 24187 43409 43409 0.1903000049314869 RRKLKTIL 8 Unmodified _RRKLKTIL_ 0 0 0 L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 514.358642578125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 26.318 1 26.318 25.818 26.818 0 0 0 0 0.40798 1 3745 3745 0 0 1 38228 15309 24176 24187 43410 43410 0.1903000049314869 RRKLKTIL 8 Unmodified _RRKLKTIL_ 0 0 0 L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense L1PB4_dup27|chr1:42298314-42299625:-|3.250604684937108|0.0321155031457805|6.66|151.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 514.35888671875 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 114.07 1 117.73 117.23 118.23 3.663 0 0 0 0.40798 1 27248 27248 0 0 1 38229 15309 24176 24187 43411 43411 0.1903000049314869 RRKLLGPVN 9 Unmodified _RRKLLGPVN_ 0 0 0 REV__ENST00000376511.6_1_6:30569009-30569351:-|nuORF REV__ENST00000376511.6_1_6:30569009-30569351:-|nuORF MSMS UPN47_class_I_Rep_1 2 526.8384399414062 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 77.936 1 81.365 80.865 81.865 3.4289 0 0 0 0.39518 1 19358 19358 1.8442 0.19162 1 + 38230 22018 24177 24188 43412 43412 0.13768239453679598 RRKLNKKKVRL 11 Unmodified _RRKLNKKKVRL_ 0 0 0 REV__ENST00000238789.9_1_2:24103598-24107652:-|nuORF REV__ENST00000238789.9_1_2:24103598-24107652:-|nuORF MSMS UPN47_class_I_Rep_1 2 480.33184814453125 3 480.331683 1437.97322 NaN NaN NaN NaN NaN NaN NaN 65.814 1 69.171 68.671 69.671 3.3576 0 0 0 0.38417 1 15723 15723 0.094841 0 1 + 38231 21502 24178 24189 43413 43413 0.2717514847838629 RRKLPKIIINA 11 Unmodified _RRKLPKIIINA_ 0 0 0 HAL1_dup4454|chr3:42049180-42050645:-|1.14786386492888|0.0090680335738268|6.98|151.0|11|1|sense HAL1_dup4454|chr3:42049180-42050645:-|1.14786386492888|0.0090680335738268|6.98|151.0|11|1|sense HAL1_dup4454|chr3:42049180-42050645:-|1.14786386492888|0.0090680335738268|6.98|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.21 1 79.21 78.71 79.71 0 0 0 0 0.38417 1 18595 18595 0.45452 0.35968 1 38232 7891 24179 24190 43414 43414 0.2241727705586527 RRKLPPGP 8 Unmodified _RRKLPPGP_ 0 0 0 ENSG00000138115|ENST00000371270|CYP2C8 ENSG00000138115|ENST00000371270|CYP2C8 ENSG00000138115|ENST00000371270|CYP2C8 MSMS UPN47_class_I_Rep_1 2 460.79290771484375 2 460.793061 919.571569 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.52 111.02 112.02 3.6521 0 0 0 0.40604 1 26452 26452 2.5775 0 1 38233 3066 24180 24191 43415 43415 0.10856609845086496 RRKLPYLY 8 Unmodified _RRKLPYLY_ 0 0 0 REV__ENST00000489193.1_1_3:86062314-86062485:+|nuORF REV__ENST00000489193.1_1_3:86062314-86062485:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.8327026367188 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 70.281 1 73.652 73.152 74.152 3.3713 0 0 0 0.40604 1 17072 17072 2.5775 0.73324 1 + 38234 22617 24181 24192 43416 43416 0.10577721222125547 RRKLQNIY 8 Unmodified _RRKLQNIY_ 0 0 0 L1ME1_dup2902|chr2:28190850-28191803:+|1.3582266087911217|0.0128267576494419|6.73|150.0|26|3|sense L1ME1_dup2902|chr2:28190850-28191803:+|1.3582266087911217|0.0128267576494419|6.73|150.0|26|3|sense L1ME1_dup2902|chr2:28190850-28191803:+|1.3582266087911217|0.0128267576494419|6.73|150.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 545.8300170898438 2 545.827632 1089.64071 NaN NaN NaN NaN NaN NaN NaN 55.05 1 58.36 57.86 58.86 3.3102 0 0 0 0.40746 1 12493 12493 0.69038 0 1 38235 12372 24182 24193 43417 43417 0.09947649074001674 RRKLVHTL 8 Unmodified _RRKLVHTL_ 0 0 0 REV__L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|353|3|anti-sense REV__L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|353|3|anti-sense MSMS UPN46_class_I_Rep_3 1 511.8319396972656 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 34.582 1 34.582 34.082 35.082 0 0 0 0 0.40746 1 6192 6192 0.69038 0 1 + 38236 25082 24183 24194 43418 43418 0.1409225679924475 RRKMAGGK 8 Unmodified _RRKMAGGK_ 0 0 0 ENSG00000215115|ENST00000535490|CXorf49;ENSG00000215113|ENST00000542739|CXorf49B ENSG00000215115|ENST00000535490|CXorf49 ENSG00000215115|ENST00000535490|CXorf49 MULTI-MSMS UPN46_class_I_Rep_3 1 452.26934814453125 2 452.268896 902.523239 0.034041 1.5395E-05 0.92847 0.00041992 0.96251 0.00043531 452.26927713443837 34.696 0.055386 34.696 34.684 34.74 0 6 4 2 0 0 0 0.82752 1 6231 6231 0 0 1 367260 38237 5632 24184 24195 43419 43419 0.06807792933545898 RRKMAGGK 8 Unmodified _RRKMAGGK_ 0 0 0 ENSG00000215115|ENST00000535490|CXorf49;ENSG00000215113|ENST00000542739|CXorf49B ENSG00000215115|ENST00000535490|CXorf49 ENSG00000215115|ENST00000535490|CXorf49 MULTI-SECPEP UPN46_class_I_Rep_3 1 452.2687683105469 2 452.268896 902.523239 -0.10976 -4.9643E-05 0.21194 9.5856E-05 0.10218 4.6213E-05 452.26891477244493 28.206 0.1314 28.206 28.111 28.242 0 20 9 3 0 0 0 0.72333 1 4288 4288 0 0 1 268230 38238 5632 24184 24195 43420 43420 0.06807792933545898 RRKNFKNK 8 Unmodified _RRKNFKNK_ 0 0 0 REV__L1MB8_dup15573|chr20:1139767-1140923:+|2.6786211635220094|0.2745398546550024|3.29|151.0|2|1|sense REV__L1MB8_dup15573|chr20:1139767-1140923:+|2.6786211635220094|0.2745398546550024|3.29|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 545.8309936523438 2 545.833249 1089.65194 NaN NaN NaN NaN NaN NaN NaN 89.465 1 93.139 92.639 93.639 3.6738 0 0 0 0.40746 1 22369 22369 0.69038 0 1 + 38239 26380 24185 24196 43421 43421 0.11070471168113727 RRKNSVVLR 9 Unmodified _RRKNSVVLR_ 0 0 0 L1PA8A_dup158|chr1:247131081-247132556:+|6.542750781398487|0.3896978431554244|4.07|151.0|14|2|sense L1PA8A_dup158|chr1:247131081-247132556:+|6.542750781398487|0.3896978431554244|4.07|151.0|14|2|sense L1PA8A_dup158|chr1:247131081-247132556:+|6.542750781398487|0.3896978431554244|4.07|151.0|14|2|sense MSMS UPN48_class_I_Rep_2 6 564.359619140625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 81.759 1 85.415 84.915 85.915 3.6567 0 0 0 0.4007 1 19413 19413 0.52476 0 1 38240 14965 24186 24197 43422 43422 0.14642429230934795 RRKPASSL 8 Unmodified _RRKPASSL_ 0 0 0 HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|25|1|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|25|1|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.7801513671875 2 457.780151 913.545748 -0.12805 -5.8616E-05 0.2677 0.00012255 0.13966 6.3933E-05 457.78024555194435 81.465 0.79707 84.788 84.551 85.348 3.3231 129 86 2 0 0 0 0.82752 1 20362 20362 2.0598 0 1 150530 38241 8335 24187 24198 43423 43423 0.08551715602800414 RRKPASSL 8 Unmodified _RRKPASSL_ 0 0 0 HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|25|1|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|25|1|sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|25|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.7800598144531 2 457.780151 913.545748 0.21356 9.7765E-05 -0.051036 -2.3363E-05 0.16253 7.4402E-05 457.78004578722664 81.106 0.325 84.769 84.487 84.812 3.6635 62 40 2 0 0 0 0.82752 1 19202 19202 4.756 0 1 222980 38242 8335 24187 24198 43424 43424 0.08551715602800414 RRKPKELFK 9 Unmodified _RRKPKELFK_ 0 0 0 REV__ENST00000461195.5_1_17:27071094-27074974:+|nuORF REV__ENST00000461195.5_1_17:27071094-27074974:+|nuORF MSMS UPN47_class_I_Rep_3 4 601.3806762695312 2 601.380032 1200.74551 NaN NaN NaN NaN NaN NaN NaN 94.183 1 97.59 97.09 98.09 3.4068 0 0 0 0.4007 1 23448 23448 0.52476 0 1 + 38243 17867 24188 24199 43425 43425 0.1531677055054388 RRKPRHYY 8 Unmodified _RRKPRHYY_ 0 0 0 L1PA3_dup6002|chr9:92082240-92088398:-|2.282740852700725|0.2181620912494731|3.39|151.0|117|2|sense;L1PA3_dup4709|chr7:37163343-37169491:-|11.219360921703444|0.1922281966360752|5.87|151.0|27|1|sense L1PA3_dup6002|chr9:92082240-92088398:-|2.282740852700725|0.2181620912494731|3.39|151.0|117|2|sense L1PA3_dup6002|chr9:92082240-92088398:-|2.282740852700725|0.2181620912494731|3.39|151.0|117|2|sense MSMS UPN47_class_I_Rep_3 4 588.2823486328125 2 588.330873 1174.64719 NaN NaN NaN NaN NaN NaN NaN 58.966 1 62.132 61.632 62.632 3.1658 0 0 0 0.40738 1 13742 13742 0.79363 0 1 38244 14267 24189 24200 43426 43426 0.06685587025367568 RRKQKTRIK 9 Unmodified _RRKQKTRIK_ 0 0 0 L1ME1_dup7996|chr4:67650882-67651290:+|1.2991756070536462|0.2565871574493328|2.34|150.0|3|1|sense L1ME1_dup7996|chr4:67650882-67651290:+|1.2991756070536462|0.2565871574493328|2.34|150.0|3|1|sense L1ME1_dup7996|chr4:67650882-67651290:+|1.2991756070536462|0.2565871574493328|2.34|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 405.2682800292969 3 405.270312 1212.78911 NaN NaN NaN NaN NaN NaN NaN 99.566 1 103.45 102.95 103.95 3.8839 0 0 0 0.39887 1 23578 23578 0.96228 0 1 38245 12439 24190 24201 43427 43427 0.19122380047679144 RRKQRVALT 9 Unmodified _RRKQRVALT_ 0 0 0 REV__nc|ENSG00000133740|Q15329-2|E2F5 REV__nc|ENSG00000133740|Q15329-2|E2F5 MSMS UPN48_class_I_Rep_2 6 564.3589477539062 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 63.142 1 66.616 66.116 67.116 3.4738 0 0 0 0.39518 1 14172 14172 1.8442 0 1 + 38246 19067 24191 24202 43428 43428 0.14642429230934795 RRKQSQHQ 8 Unmodified _RRKQSQHQ_ 0 0 0 ENST00000431180.5_1_3:47139473-47139536:-|nuORF;ENST00000484689.1_1_3:47139457-47139640:-|nuORF ENST00000431180.5_1_3:47139473-47139536:-|nuORF ENST00000431180.5_1_3:47139473-47139536:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 533.7930297851562 2 534.294488 1066.57442 0.32825 0.00017538 -0.99335 -0.00053074 -0.66509 -0.00035536 534.2938917126454 41.175 0.33836 41.175 41.024 41.362 0 45 33 2 0 0 0 0.72333 1 8054 8054 10.824 2.9138 1 213070 38247 6729 24192 24203 43429 43429 0.043798332319511246 RRKRKCLIP 9 Unmodified _RRKRKCLIP_ 0 0 0 REV__L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense REV__L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 585.375 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 37.544 1 37.544 37.044 38.044 0 0 0 0 0.40038 1 7069 7069 0.6015 0.076735 1 + 38248 28168 24193 24204 43430 43430 0.1562825025557686 RRKRKCLIP 9 Unmodified _RRKRKCLIP_ 0 0 0 REV__L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense REV__L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 585.374755859375 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 33.529 1 37.049 36.549 37.549 3.5201 0 0 0 0.40038 1 5241 5241 0.6015 0.14316 1 + 38249 28168 24193 24204 43431 43431 0.1562825025557686 RRKRKCLIP 9 Unmodified _RRKRKCLIP_ 0 0 0 REV__L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense REV__L1ME3F_dup1656|chr5:178218717-178218955:+|1.1608888647424005|0.1539526134218843|2.91|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 585.3748779296875 2 585.374227 1168.7339 NaN NaN NaN NaN NaN NaN NaN 51.04 1 54.651 54.151 55.151 3.6105 0 0 0 0.40038 1 10419 10419 0.6015 0 1 + 38250 28168 24193 24204 43432 43432 0.1562825025557686 RRKRKHRP 8 Unmodified _RRKRKHRP_ 0 0 0 L1MD_dup6181|chr11:68770457-68770839:-|2.6987838410912164|0.1379205270069947|4.29|151.0|1|1|sense L1MD_dup6181|chr11:68770457-68770839:-|2.6987838410912164|0.1379205270069947|4.29|151.0|1|1|sense L1MD_dup6181|chr11:68770457-68770839:-|2.6987838410912164|0.1379205270069947|4.29|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 567.3639526367188 2 567.365582 1132.71661 NaN NaN NaN NaN NaN NaN NaN 56.98 1 60.514 60.014 61.014 3.5333 0 0 0 0.40746 1 12284 12284 0.69038 0 1 38251 11886 24194 24205 43433 43433 0.1555609076476685 RRKRKHRP 8 Unmodified _RRKRKHRP_ 0 0 0 L1MD_dup6181|chr11:68770457-68770839:-|2.6987838410912164|0.1379205270069947|4.29|151.0|1|1|sense L1MD_dup6181|chr11:68770457-68770839:-|2.6987838410912164|0.1379205270069947|4.29|151.0|1|1|sense L1MD_dup6181|chr11:68770457-68770839:-|2.6987838410912164|0.1379205270069947|4.29|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 567.4102783203125 2 567.365582 1132.71661 NaN NaN NaN NaN NaN NaN NaN 56.404 1 59.947 59.447 60.447 3.5427 0 0 0 0.40746 1 12044 12044 0.69038 0 1 38252 11886 24194 24205 43434 43434 0.1555609076476685 RRKRLVKLPC 10 Unmodified _RRKRLVKLPC_ 0 0 0 ENST00000494268.1_1_X:11778342-11782058:+|nuORF;nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3 ENST00000494268.1_1_X:11778342-11782058:+|nuORF ENST00000494268.1_1_X:11778342-11782058:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 634.3775634765625 2 634.908433 1267.80231 0.4975 0.00031587 -1.6534 -0.0010497 -1.1559 -0.00073387 635.4088525401918 104.22 0.13281 107.92 107.89 108.03 3.6991 33 17 2 0 0 0 0.84575 1 24679 24679 0.40072 0.050084 1 10202000 38253 696 24195 24206 43435 43435 0.17912494835445614 RRKRNELYA 9 Unmodified _RRKRNELYA_ 0 0 0 REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF MSMS UPN46_class_I_Rep_3 1 603.3473510742188 2 603.34672 1204.67889 NaN NaN NaN NaN NaN NaN NaN 98.909 1 98.909 98.409 99.409 0 0 0 0 0.40038 1 24085 24085 0.6015 0 1 + 38254 22825 24196 24207 43436 43436 0.08473534988661413 RRKRPPRQ 8 Unmodified _RRKRPPRQ_ 0 0 0 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 MSMS UPN48_class_I_Rep_2 6 547.3327026367188 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 88.741 1 92.479 91.979 92.979 3.7379 0 0 0 0.40746 1 21125 21125 0.69038 0 1 38255 2311 24197 24208 43437 43437 0.13144695636560755 RRKRPPRQ 8 Unmodified _RRKRPPRQ_ 0 0 0 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 MSMS UPN48_class_I_Rep_2 6 547.3319091796875 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 101.74 1 105.46 104.96 105.96 3.7252 0 0 0 0.40746 1 24122 24122 0.69038 0 1 38256 2311 24197 24208 43438 43438 0.13144695636560755 RRKRPPRQ 8 Unmodified _RRKRPPRQ_ 0 0 0 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 ENSG00000119986|ENST00000370626|AVPI1 MSMS UPN48_class_I_Rep_3 7 547.33251953125 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 90.292 1 94.139 93.639 94.639 3.847 0 0 0 0.40746 1 21434 21434 0.69038 0 1 38257 2311 24197 24208 43439 43439 0.13144695636560755 RRKRQIYGY 9 Unmodified _RRKRQIYGY_ 0 0 0 nc|ENSG00000150687|O95084-2|PRSS23;ENSG00000150687|ENST00000280258|PRSS23 nc|ENSG00000150687|O95084-2|PRSS23 nc|ENSG00000150687|O95084-2|PRSS23 MSMS UPN46_class_I_Rep_3 1 620.358642578125 2 620.357088 1238.69962 NaN NaN NaN NaN NaN NaN NaN 104.76 1 104.76 104.26 105.26 0 0 0 0 0.40038 1 25565 25565 0.6015 0.14316 1 38258 3569 24198 24209 43440 43440 0.08982125368333982 RRKRQNRH 8 Unmodified _RRKRQNRH_ 0 0 0 REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF MSMS UPN46_class_I_Rep_3 1 575.843017578125 2 575.842471 1149.67039 NaN NaN NaN NaN NaN NaN NaN 84.664 1 84.664 84.164 85.164 0 0 0 0 0.40746 1 20156 20156 0.69038 0 1 + 38259 22509 24199 24210 43441 43441 0.1015402586269829 RRKRQNRH 8 Unmodified _RRKRQNRH_ 0 0 0 REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF MSMS UPN46_class_I_Rep_3 1 575.842529296875 2 575.842471 1149.67039 NaN NaN NaN NaN NaN NaN NaN 85.864 1 85.864 85.364 86.364 0 0 0 0 0.40746 1 20508 20508 0.69038 0 1 + 38260 22509 24199 24210 43442 43442 0.1015402586269829 RRKRRNFSK 9 Unmodified _RRKRRNFSK_ 0 0 0 ENSG00000167081|ENST00000373489|PBX3;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|4|intron;ENSG00000204304|ENST00000375050|PBX2;nc|ENSG00000167081|P40426-5|PBX3;nc|ENSG00000167081|P40426-2|PBX3;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|6|intron;ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|4|intron;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|7|intron;ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|2|intron;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|1|intron;ENSG00000167081.18,PBX3,chr9,+,I14.1,125949441,125960683|42|17.42|3|intron;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|2|intron;nc|ENSG00000167081|P40426-3|PBX3;ENST00000558222.1_1_19:19675736-19681567:-|nuORF;nc|ENSG00000167081|P40426-4|PBX3;ENSG00000105717|ENST00000251203|PBX4;ENSG00000167081.18,PBX3,chr9,+,I13.1,125935608,125949377|46|14.51|3|intron ENSG00000167081|ENST00000373489|PBX3 ENSG00000167081|ENST00000373489|PBX3 MSMS UPN48_class_I_Rep_2 6 624.3822631835938 2 624.381429 1246.7483 NaN NaN NaN NaN NaN NaN NaN 93.884 1 97.66 97.16 98.16 3.7761 0 0 0 0.39598 1 22325 22325 1.6526 0.17072 1 38261 4288 24200 24211 43443 43443 0.13480038728062027 RRKRSVNPK 9 Unmodified _RRKRSVNPK_ 0 0 0 REV__L1ME1_dup13738|chr7:92816377-92819538:+|5.307144712128272|0.039125723873134|7.08|151.0|87|3|sense REV__L1ME1_dup13738|chr7:92816377-92819538:+|5.307144712128272|0.039125723873134|7.08|151.0|87|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.3228759765625 2 570.857255 1139.69996 -0.14339 -8.1856E-05 -0.94033 -0.0005368 -1.0837 -0.00061865 570.8570103212887 12.932 0.07489 16.382 16.334 16.409 3.45 7 4 2 0 0 0 0.12532 1 183 183 0.52476 0 1 12755 + 38262 27603 24201 24212 43444 43444 0.13569545088171253 RRKSLSLG 8 Unmodified _RRKSLSLG_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 458.7879638671875 2 458.787976 915.561398 0.141 6.4688E-05 0.2071 9.5015E-05 0.3481 0.0001597 458.78802445394734 84.427 0.22654 87.992 87.968 88.194 3.5655 50 26 2 0 0 0 0.82752 1 21145 21145 0.69038 0.69038 1 438360 38263 11877 24202 24213 43445 43445 0.10024002119871511 RRKSLSLG 8 Unmodified _RRKSLSLG_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 458.78857421875 2 458.787976 915.561398 NaN NaN NaN NaN NaN NaN NaN 84.728 1 88.319 87.819 88.819 3.5914 0 0 0 0.40746 1 21191 21191 0.69038 0 1 38264 11877 24202 24213 43446 43446 0.10024002119871511 RRKSLSLG 8 Unmodified _RRKSLSLG_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 458.7881774902344 2 458.787976 915.561398 0.033533 1.5384E-05 0.0686 3.1473E-05 0.10213 4.6857E-05 458.7878206180907 84.162 1.3167 87.585 86.864 88.18 3.4232 428 171 4 0 0 0 0.82752 1 21100 21100 0.69038 0.69038 1 2859400 38265 11877 24202 24213 43447 43447 0.10024002119871511 RRKSLSLG 8 Unmodified _RRKSLSLG_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 458.788330078125 2 458.787976 915.561398 NaN NaN NaN NaN NaN NaN NaN 84.899 1 88.26 87.76 88.76 3.3615 0 0 0 0.40746 1 21303 21303 0.69038 0 1 38266 11877 24202 24213 43448 43448 0.10024002119871511 RRKSLSLG 8 Unmodified _RRKSLSLG_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 458.787841796875 2 458.787976 915.561398 0.17299 7.9367E-05 1.1911 0.00054646 1.3641 0.00062583 458.78795147319516 84.326 0.2567 88.02 87.937 88.193 3.6937 76 36 3 0 0 0 0.82752 1 20064 20064 0.69038 0 1 639000 38267 11877 24202 24213 43449 43449 0.10024002119871511 RRKSLSLG 8 Unmodified _RRKSLSLG_ 0 0 0 L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 458.78802490234375 2 458.787976 915.561398 0.20807 9.546E-05 0.39792 0.00018256 0.60599 0.00027802 458.787903776318 84.309 0.18892 88.037 87.957 88.146 3.7281 61 26 3 0 0 0 0.82752 1 20015 20015 0.69038 0 1 1491100 38268 11877 24202 24213 43450 43450 0.10024002119871511 RRKSQSRK 8 Unmodified _RRKSQSRK_ 0 0 0 REV__Tigger4_dup704|chr7:102420704-102421168:+|1.2531448296071406|0.1405904334212152|3.16|151.0|1|1|sense REV__Tigger4_dup704|chr7:102420704-102421168:+|1.2531448296071406|0.1405904334212152|3.16|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 523.3035278320312 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 79.013 1 82.646 82.146 83.146 3.6331 0 0 0 0.39996 1 18756 18756 7.9102 0 1 + 38269 32784 24203 24214 43451 43451 0.10592996645709718 RRKSVSLP 8 Unmodified _RRKSVSLP_ 0 0 0 MLT1D_dup7140|chr6:24904119-24904628:-|2.436693700823368|0.0400875304031823|5.93|151.0|38|3|anti-sense MLT1D_dup7140|chr6:24904119-24904628:-|2.436693700823368|0.0400875304031823|5.93|151.0|38|3|anti-sense MLT1D_dup7140|chr6:24904119-24904628:-|2.436693700823368|0.0400875304031823|5.93|151.0|38|3|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7952880859375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 38.375 1 42.04 41.54 42.54 3.6652 0 0 0 0.40604 1 7388 7388 2.5775 0.27475 1 38270 16357 24204 24215 43452 43452 0.10392288636899139 RRKTHLKPG 9 Unmodified _RRKTHLKPG_ 0 0 0 REV__L1M4a1_dup289|chr2:31894078-31894787:+|1.1569426244022971|0.066802362276874|4.11|151.0|19|2|sense REV__L1M4a1_dup289|chr2:31894078-31894787:+|1.1569426244022971|0.066802362276874|4.11|151.0|19|2|sense MSMS UPN47_class_I_Rep_2 3 546.8402709960938 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 93.019 1 96.488 95.988 96.988 3.4687 0 0 0 0.39598 1 22972 22972 1.6526 0.17072 1 + 38271 24490 24205 24216 43453 43453 0.12542757685150718 RRKTLTSRE 9 Unmodified _RRKTLTSRE_ 0 0 0 L1PA6_dup4469|chr11:75974666-75980018:-|2.53458435153854|0.0775317014571722|5.03|151.0|11|1|sense L1PA6_dup4469|chr11:75974666-75980018:-|2.53458435153854|0.0775317014571722|5.03|151.0|11|1|sense L1PA6_dup4469|chr11:75974666-75980018:-|2.53458435153854|0.0775317014571722|5.03|151.0|11|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 573.8379516601562 2 573.838728 1145.6629 -0.11848 -6.7989E-05 -0.10046 -5.765E-05 -0.21895 -0.00012564 573.8386137211326 12.77 0.3543 12.77 12.699 13.054 0 49 28 2 0 0 0 0.47197 1 236 236 3.5965 0 1 144780 38272 14633 24206 24217 43454 43454 0.09589828751745699 RRKTNKQRTS 10 Unmodified _RRKTNKQRTS_ 0 0 0 L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|110|3|sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|110|3|sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|110|3|sense MSMS UPN48_class_I_Rep_1 5 637.8734130859375 2 637.873634 1273.73271 NaN NaN NaN NaN NaN NaN NaN 102.79 1 106.41 105.91 106.91 3.6164 0 0 0 0.53105 1 24779 24779 1.4819 0 1 38273 14544 24207 24218 43455 43455 0.10679707420354134 RRKVILHT 8 Unmodified _RRKVILHT_ 0 0 0 ENSG00000170683|ENST00000642047|OR10A3 ENSG00000170683|ENST00000642047|OR10A3 ENSG00000170683|ENST00000642047|OR10A3 MSMS UPN46_class_I_Rep_3 1 511.83245849609375 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 28.43 1 28.43 27.93 28.93 0 0 0 0 0.40746 1 4363 4363 0.69038 0 1 38274 4485 24208 24219 43456 43456 0.14092256799222014 RRKWIRYRRYK 11 Unmodified _RRKWIRYRRYK_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MSMS UPN48_class_I_Rep_1 5 561.0064697265625 3 561.00597 1679.99608 NaN NaN NaN NaN NaN NaN NaN 100.94 1 104.55 104.05 105.05 3.6084 0 0 0 0.38417 1 24370 24370 0 0 1 38275 5558 24209 24220 43457 43457 0.18328167595859668 RRKWIRYRRYK 11 Unmodified _RRKWIRYRRYK_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-SECPEP UPN48_class_I_Rep_2 6 560.3359375 3 561.00597 1679.99608 0.49395 0.00027711 0.17732 9.9476E-05 0.67127 0.00037659 561.006098074941 100.95 0.11648 104.69 104.6 104.72 3.7416 24 16 2 0 0 0 22.551 1 23962 23962 0 0 1 107440 38276 5558 24209 24220 43458 43458 0.18328167595859668 RRKWIRYRRYK 11 Unmodified _RRKWIRYRRYK_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-MSMS UPN48_class_I_Rep_3 7 561.0034790039062 3 561.00597 1679.99608 0.42162 0.00023653 0.57364 0.00032182 0.99526 0.00055835 561.0057091046638 100.86 0.099884 104.68 104.64 104.74 3.8153 16 13 2 0 0 0 0.68583 1 23871 23871 0 0 1 86743 38277 5558 24209 24220 43459 43459 0.18328167595859668 RRKWIRYRRYK 11 Unmodified _RRKWIRYRRYK_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-MATCH UPN48_class_I_Rep_1 5 3 561.00597 1679.99608 0.44959 0.00025222 1.3662 0.00076642 1.8157 0.0010186 561.0063010614446 100.79 0.032425 104.4 104.38 104.41 3.6084 -0.18756 0.0014835 NaN 0 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 59208 38278 5558 24209 24220 0.18328167595859668 RRKYKTIDK 9 Unmodified _RRKYKTIDK_ 0 0 0 REV__LTR104_Mam_dup1689|chr16:70420693-70420868:+|1.1887186682602957|0.0065029436469974|7.51|151.0|6|1|anti-sense REV__LTR104_Mam_dup1689|chr16:70420693-70420868:+|1.1887186682602957|0.0065029436469974|7.51|151.0|6|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 403.580810546875 3 403.247173 1206.71969 -0.41258 -0.00016637 -0.53776 -0.00021685 -0.95034 -0.00038322 403.24690785226096 97.132 0.19165 100.61 100.57 100.76 3.4791 38 26 2 0 0 0 0.49187 1 23859 23859 0.77653 0 1 109780 + 38279 30779 24210 24221 43460 43460 0.12459876308253115 RRKYVFQCT 9 Unmodified _RRKYVFQCT_ 0 0 0 nc|ENSG00000184347|O75094-2|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3 nc|ENSG00000184347|O75094-2|SLIT3 nc|ENSG00000184347|O75094-2|SLIT3 MSMS UPN48_class_I_Rep_3 7 600.8207397460938 2 600.81895 1199.62335 NaN NaN NaN NaN NaN NaN NaN 49.759 1 53.38 52.88 53.88 3.621 0 0 0 0.39598 1 10023 10023 1.6526 0.17072 1 38280 5049 24211 24222 43461 43461 0.03151985476665686 RRLACLAA 8 Unmodified _RRLACLAA_ 0 0 0 REV__ENSG00000156802|ENST00000287394|ATAD2 REV__ENSG00000156802|ENST00000287394|ATAD2 MSMS UPN48_class_I_Rep_1 5 437.2579040527344 2 437.257997 872.501441 NaN NaN NaN NaN NaN NaN NaN 101.81 1 105.42 104.92 105.92 3.612 0 0 0 0.40581 1 24567 24567 2.8892 0 1 + 38281 19806 24212 24223 43462 43462 0.06008988184953523 RRLAEPIS 8 Unmodified _RRLAEPIS_ 0 0 0 REV__ENSG00000261150|ENST00000615648|EPPK1 REV__ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS UPN48_class_I_Rep_1 5 471.27978515625 2 471.279983 940.545414 0.10145 4.7811E-05 -0.28643 -0.00013499 -0.18498 -8.7177E-05 471.279859683721 83.5 0.40961 87.087 87.045 87.455 3.5871 64 47 2 0 0 0 0.82752 1 20047 20047 2.0598 0 1 202030 + 38282 21397 24213 24224 43463 43463 0.0727629588294576 RRLALKEKR 9 Unmodified _RRLALKEKR_ 0 0 0 REV__LTR10B2_dup13|chr1:235675282-235675570:+|1.02146497811696|0.026910761038283|5.25|150.0|20|3|anti-sense REV__LTR10B2_dup13|chr1:235675282-235675570:+|1.02146497811696|0.026910761038283|5.25|150.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.2274780273438 2 585.383106 1168.75166 NaN NaN NaN NaN NaN NaN NaN 113.99 1 113.99 113.49 114.49 0 0 0 0 0.39518 1 28162 28162 1.8442 0 1 + 38283 30783 24214 24225 43464 43464 0.17403288782088566 RRLCFLVF 8 Unmodified _RRLCFLVF_ 0 0 0 REV__AluSx_dup45822|chr7:102143770-102144081:-|1.068982143843286|0.0027660993870373|8.59|151.0|14|1|anti-sense REV__AluSx_dup45822|chr7:102143770-102144081:-|1.068982143843286|0.0027660993870373|8.59|151.0|14|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.3045043945312 2 527.304947 1052.59534 0.42421 0.00022369 0.36463 0.00019227 0.78884 0.00041596 527.305102356276 90.277 0.54247 93.967 93.637 94.179 3.6899 100 71 2 0 0 0 0.82752 1 22492 22492 0.69038 0 1 92668 + 38284 17141 24215 24226 43465 43465 0.07114707287246347 RRLCFLVF 8 Unmodified _RRLCFLVF_ 0 0 0 REV__AluSx_dup45822|chr7:102143770-102144081:-|1.068982143843286|0.0027660993870373|8.59|151.0|14|1|anti-sense REV__AluSx_dup45822|chr7:102143770-102144081:-|1.068982143843286|0.0027660993870373|8.59|151.0|14|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 527.305419921875 2 527.304947 1052.59534 0.4752 0.00025058 0.48046 0.00025335 0.95567 0.00050393 527.3051186266487 89.867 0.721 93.709 93.376 94.097 3.8421 163 96 2 0 0 0 0.82752 2 21375 21321;21375 5.2307 2.3415 1 334320 + 38285 17141 24215 24226 43466;43467 43467 0.07114707287246347 RRLCRHKK 8 Unmodified _RRLCRHKK_ 0 0 0 LTR78_dup847|chr3:18204576-18205212:-|1.0237915363195478|0.0042052833519343|7.93|144.0|24|3|sense LTR78_dup847|chr3:18204576-18205212:-|1.0237915363195478|0.0042052833519343|7.93|144.0|24|3|sense LTR78_dup847|chr3:18204576-18205212:-|1.0237915363195478|0.0042052833519343|7.93|144.0|24|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8355102539062 2 548.835269 1095.65598 0.13559 7.4417E-05 -0.4958 -0.00027211 -0.36021 -0.0001977 548.8348258752369 30.087 0.13687 30.087 30.015 30.152 0 18 11 2 0 0 0 0.82752 1 4860 4860 0.69038 0 1 131080 38286 15709 24216 24227 43468 43468 0.1119823739018102 RRLCRHKK 8 Unmodified _RRLCRHKK_ 0 0 0 LTR78_dup847|chr3:18204576-18205212:-|1.0237915363195478|0.0042052833519343|7.93|144.0|24|3|sense LTR78_dup847|chr3:18204576-18205212:-|1.0237915363195478|0.0042052833519343|7.93|144.0|24|3|sense LTR78_dup847|chr3:18204576-18205212:-|1.0237915363195478|0.0042052833519343|7.93|144.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.8350830078125 2 548.835269 1095.65598 0.49634 0.00027241 -0.17901 -9.8249E-05 0.31732 0.00017416 548.8350250951762 108.72 0.63731 112.26 112.09 112.73 3.5382 272 72 5 0 0 0 0.82752 1 26787 26787 0 0 1 173970000 38287 15709 24216 24227 43469 43469 0.1119823739018102 RRLEFYYYS 9 Unmodified _RRLEFYYYS_ 0 0 0 LTR8_dup2972|chr17:9333853-9334558:-|1.3483528204685669|0.0078139794217527|7.43|151.0|47|3|anti-sense;LTR8_dup1215|chr6:154785990-154786721:-|1.2095517948320966|0.0567102678273551|4.41|151.0|38|3|anti-sense LTR8_dup2972|chr17:9333853-9334558:-|1.3483528204685669|0.0078139794217527|7.43|151.0|47|3|anti-sense LTR8_dup2972|chr17:9333853-9334558:-|1.3483528204685669|0.0078139794217527|7.43|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_1 5 432.8852844238281 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 96.145 1 99.758 99.258 100.26 3.6124 0 0 0 0.39518 1 23155 23155 0.96228 0 1 38288 15712 24217 24228 43470 43470 -0.006117980909266407 RRLEKHSIRV 10 Unmodified _RRLEKHSIRV_ 0 0 0 L1PA5_dup1832|chr3:40271391-40277508:+|1.3636188535306308|0.0647398038675745|4.4|150.0|295|2|anti-sense L1PA5_dup1832|chr3:40271391-40277508:+|1.3636188535306308|0.0647398038675745|4.4|150.0|295|2|anti-sense L1PA5_dup1832|chr3:40271391-40277508:+|1.3636188535306308|0.0647398038675745|4.4|150.0|295|2|anti-sense MSMS UPN47_class_I_Rep_3 4 647.3948364257812 2 647.396744 1292.77894 NaN NaN NaN NaN NaN NaN NaN 90.576 1 93.974 93.474 94.474 3.3976 0 0 0 0.53105 1 22698 22698 3.2813 0.78282 1 38289 14431 24218 24229 43471 43471 0.14425772322442754 RRLEKSLEVK 10 Unmodified _RRLEKSLEVK_ 0 0 0 REV__nc|ENSG00000279484|Q8NEE0|KLHL30-AS1 REV__nc|ENSG00000279484|Q8NEE0|KLHL30-AS1 MSMS UPN46_class_I_Rep_3 1 629.383544921875 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 22.07 1 22.07 21.57 22.57 0 0 0 0 0.53105 1 2566 2566 3.2813 0 1 + 38290 32125 24219 24230 43472 43472 0.13836128134153114 RRLELTVT 8 Unmodified _RRLELTVT_ 0 0 0 REV__ENSG00000232070|ENST00000556585|TMEM253 REV__ENSG00000232070|ENST00000556585|TMEM253 MULTI-MSMS UPN48_class_I_Rep_1 5 494.3011474609375 2 494.300916 986.587279 0.17755 8.7761E-05 0.20606 0.00010186 0.38361 0.00018962 494.30104474118247 88.071 1.4225 91.69 91.211 92.633 3.6187 525 165 5 0 0 0 0.82752 1 21320 21320 0.69038 0 1 12728000 + 38291 21300 24220 24231 43473 43473 0.09344851571484014 RRLETSIS 8 Unmodified _RRLETSIS_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MSMS UPN47_class_I_Rep_3 4 481.2733459472656 2 481.274898 960.535243 NaN NaN NaN NaN NaN NaN NaN 25.838 1 29.186 28.686 29.686 3.3478 0 0 0 0.40625 1 3692 3692 2.3027 0 1 38292 3749 24221 24232 43474 43474 0.05339688157721412 RRLGCVFI 8 Unmodified _RRLGCVFI_ 0 0 0 REV__L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|63|2|anti-sense REV__L1PA13_dup3715|chr7:30326139-30327438:-|1.562913060650608|0.0121231214865678|7.01|151.0|63|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 481.77984619140625 2 482.281472 962.548391 -0.1986 -9.5781E-05 0.33677 0.00016242 0.13817 6.6635E-05 482.2813900575354 22.4 0.079489 25.824 25.791 25.87 3.4241 9 7 2 0 0 0 0.72333 1 2663 2663 0.79363 0 1 26233 + 38293 29098 24222 24233 43475 43475 0.06561847736111304 RRLGLIGY 8 Unmodified _RRLGLIGY_ 0 0 0 REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|117|3|sense REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|117|3|sense MSMS UPN47_class_I_Rep_3 4 474.28240966796875 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 110.17 1 113.7 113.2 114.2 3.529 0 0 0 0.40581 1 27054 27054 2.8892 0.82947 1 + 38294 30722 24223 24234 43476 43476 0.09581190125220473 RRLGLIGY 8 Unmodified _RRLGLIGY_ 0 0 0 REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|117|3|sense REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|117|3|sense MSMS UPN47_class_I_Rep_3 4 474.28240966796875 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 110.31 1 113.84 113.34 114.34 3.529 0 0 0 0.40581 1 27081 27081 2.8892 0.31174 1 + 38295 30722 24223 24234 43477 43477 0.09581190125220473 RRLGQHVV 8 Unmodified _RRLGQHVV_ 0 0 0 ENSG00000123297|ENST00000652027|TSFM;nc|ENSG00000123297|P43897-2|TSFM ENSG00000123297|ENST00000652027|TSFM ENSG00000123297|ENST00000652027|TSFM MSMS UPN47_class_I_Rep_2 3 482.79559326171875 2 482.793592 963.572632 NaN NaN NaN NaN NaN NaN NaN 118.06 1 121.54 121.04 122.04 3.4822 0 0 0 0.40746 1 28873 28873 0.69038 0 1 38296 2416 24224 24235 43478 43478 0.08938824213987573 RRLHAVAR 8 Unmodified _RRLHAVAR_ 0 0 0 ENSG00000261221|ENST00000568956|ZNF865 ENSG00000261221|ENST00000568956|ZNF865 ENSG00000261221|ENST00000568956|ZNF865 MSMS UPN48_class_I_Rep_1 5 489.78125 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 44.867 1 48.38 47.88 48.88 3.5132 0 0 0 0.40746 1 8590 8590 0.69038 0 1 38297 5785 24225 24236 43479 43479 0.10981932825166041 RRLHDIKPQ 9 Unmodified _RRLHDIKPQ_ 0 0 0 REV__nc|ENSG00000175221|Q9Y2X0-2|MED16 REV__nc|ENSG00000175221|Q9Y2X0-2|MED16 MSMS UPN48_class_I_Rep_3 7 581.84326171875 2 581.843813 1161.67307 NaN NaN NaN NaN NaN NaN NaN 88.095 1 91.906 91.406 92.406 3.8104 0 0 0 0.4007 1 20909 20909 0.52476 0 1 + 38298 20548 24226 24237 43480 43480 0.0987043647696737 RRLHDIKPQ 9 Unmodified _RRLHDIKPQ_ 0 0 0 REV__nc|ENSG00000175221|Q9Y2X0-2|MED16 REV__nc|ENSG00000175221|Q9Y2X0-2|MED16 MSMS UPN48_class_I_Rep_3 7 581.8435668945312 2 581.843813 1161.67307 NaN NaN NaN NaN NaN NaN NaN 89.617 1 93.447 92.947 93.947 3.8293 0 0 0 0.4007 1 21281 21281 0.52476 0 1 + 38299 20548 24226 24237 43481 43481 0.0987043647696737 RRLHRAGL 8 Unmodified _RRLHRAGL_ 0 0 0 REV__ENSG00000188312.14,CENPP,chr9,+,I6.1,92600509,92610543|27|6.55|1|intron REV__ENSG00000188312.14,CENPP,chr9,+,I6.1,92600509,92610543|27|6.55|1|intron MSMS UPN47_class_I_Rep_2 3 489.8060607910156 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 72.153 1 75.442 74.942 75.942 3.2899 0 0 0 0.40738 1 17672 17672 0.79363 0 1 + 38300 20962 24227 24238 43482 43482 0.10981932825166041 RRLHYDRR 8 Unmodified _RRLHYDRR_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|472|3|anti-sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|472|3|anti-sense MSMS UPN48_class_I_Rep_3 7 585.8524780273438 2 586.331405 1170.64826 NaN NaN NaN NaN NaN NaN NaN 71.563 1 75.09 74.59 75.59 3.5266 0 0 0 0.40746 1 16628 16628 0.69038 0 1 + 38301 23736 24228 24239 43483 43483 0.06975801394241898 RRLIITHF 8 Unmodified _RRLIITHF_ 0 0 0 L1P2_dup1469|chr18:36960030-36963061:+|1.2784077337477708|0.0930881211759978|3.78|151.0|74|3|sense L1P2_dup1469|chr18:36960030-36963061:+|1.2784077337477708|0.0930881211759978|3.78|151.0|74|3|sense L1P2_dup1469|chr18:36960030-36963061:+|1.2784077337477708|0.0930881211759978|3.78|151.0|74|3|sense MSMS UPN48_class_I_Rep_1 5 528.3270874023438 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 64.273 1 67.731 67.231 68.231 3.4578 0 0 0 0.40604 1 14537 14537 2.5775 0.73324 1 38302 13489 24229 24240 43484 43484 0.11484854424929836 RRLKHLHH 8 Unmodified _RRLKHLHH_ 0 0 0 REV__MER11C_dup478|chr9:95944640-95945727:-|1.0607043982883004|0.0384451914544003|4.79|151.0|19|2|sense REV__MER11C_dup478|chr9:95944640-95945727:-|1.0607043982883004|0.0384451914544003|4.79|151.0|19|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8343505859375 2 548.833583 1095.65261 0.024189 1.3276E-05 2.008 0.0011021 2.0322 0.0011153 548.8344657314436 25.017 0.039774 25.017 25.004 25.043 0 8 3 3 0 0 0 0.82752 1 3374 3374 0.79363 0.10326 1 82775 + 38303 31104 24230 24241 43485 43485 0.1086131060783373 RRLKHLKI 8 Unmodified _RRLKHLKI_ 0 0 0 REV__L1PA8_dup2022|chr4:88633943-88636853:+|3.478697174704469|0.0381410117719041|6.51|151.0|17|1|sense REV__L1PA8_dup2022|chr4:88633943-88636853:+|3.478697174704469|0.0381410117719041|6.51|151.0|17|1|sense MSMS UPN46_class_I_Rep_3 1 532.363525390625 2 532.364185 1062.71382 NaN NaN NaN NaN NaN NaN NaN 90.97 1 90.97 90.47 91.47 0 0 0 0 0.40798 1 21952 21952 0 0 1 + 38304 30209 24231 24242 43486 43486 0.18496822587258066 RRLLFLQRK 9 Unmodified _RRLLFLQRK_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|73|2|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|73|2|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|73|2|sense MSMS UPN46_class_I_Rep_3 1 615.4039916992188 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 44.59 1 44.59 44.09 45.09 0 0 0 0 0.4007 1 8997 8997 0.52476 0.12405 1 38305 8223 24232 24243 43487 43487 0.18280165678766025 RRLLHAWY 8 Unmodified _RRLLHAWY_ 0 0 0 ENST00000565537.1_1_16:2510121-2510671:+|nuORF ENST00000565537.1_1_16:2510121-2510671:+|nuORF ENST00000565537.1_1_16:2510121-2510671:+|nuORF MSMS UPN48_class_I_Rep_1 5 557.816162109375 2 557.817067 1113.61958 NaN NaN NaN NaN NaN NaN NaN 88.838 1 92.461 91.961 92.961 3.6229 0 0 0 0.40746 1 21316 21316 0.69038 0 1 38306 7487 24233 24244 43488 43488 0.06731683765110574 RRLLKHVT 8 Unmodified _RRLLKHVT_ 0 0 0 REV__ENSG00000144452|ENST00000272895|ABCA12 REV__ENSG00000144452|ENST00000272895|ABCA12 MSMS UPN46_class_I_Rep_3 1 511.8329162597656 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 28.703 1 28.703 28.203 29.203 0 0 0 0 0.40746 1 4445 4445 0.69038 0 1 + 38307 19486 24234 24245 43489 43489 0.14092256799222014 RRLLPCFR 8 Unmodified _RRLLPCFR_ 0 0 0 ENST00000340437.8_1_11:61171089-61171380:-|nuORF ENST00000340437.8_1_11:61171089-61171380:-|nuORF ENST00000340437.8_1_11:61171089-61171380:-|nuORF MSMS UPN48_class_I_Rep_2 6 530.763916015625 2 530.81347 1059.61239 NaN NaN NaN NaN NaN NaN NaN 115.83 1 119.49 118.99 119.99 3.6607 0 0 0 0.40746 1 27735 27735 0.69038 0 1 38308 6229 24235 24246 43490 43490 0.08496627893032382 RRLLWLLGPRR 11 Unmodified _RRLLWLLGPRR_ 0 0 0 ENST00000265896.9_1_8:126010760-126010880:+|nuORF ENST00000265896.9_1_8:126010760-126010880:+|nuORF ENST00000265896.9_1_8:126010760-126010880:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.3094177246094 3 479.308878 1434.90481 0.16869 8.0855E-05 0.20115 9.6412E-05 0.36984 0.00017727 479.3089583730199 41.975 0.72598 45.733 45.326 46.052 3.7579 123 75 2 0 0 0 0.68491 1 7668 7668 0.08335 0 1 268110 38309 6002 24236 24247 43491 43491 0.20474903898525554 RRLLWLLGPRR 11 Unmodified _RRLLWLLGPRR_ 0 0 0 ENST00000265896.9_1_8:126010760-126010880:+|nuORF ENST00000265896.9_1_8:126010760-126010880:+|nuORF ENST00000265896.9_1_8:126010760-126010880:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.3088684082031 3 479.308878 1434.90481 0.33467 0.00016041 0.28665 0.00013739 0.62131 0.0002978 479.30899455910554 57.438 0.15143 60.952 60.869 61.021 3.5142 13 10 2 0 0 0 0.68491 1 12411 12411 0.08335 0 1 101720 38310 6002 24236 24247 43492 43492 0.20474903898525554 RRLMPGLSP 9 Unmodified _RRLMPGLSP_ 0 0 0 ENST00000425280.1_1_10:103879872-103880067:-|nuORF ENST00000425280.1_1_10:103879872-103880067:-|nuORF ENST00000425280.1_1_10:103879872-103880067:-|nuORF MSMS UPN47_class_I_Rep_1 2 513.7971801757812 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 102.92 1 106.7 106.2 107.2 3.7788 0 0 0 0.39518 1 25318 25318 1.8442 0.36234 1 38311 6701 24237 24248 43493 43493 0.06865215419247761 RRLNVALT 8 Unmodified _RRLNVALT_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS UPN47_class_I_Rep_3 4 471.7953186035156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.66 1 92.053 91.553 92.553 3.3931 0 0 0 0.40625 1 22238 22238 2.3027 0 1 38312 691 24238 24249 43494 43494 0.10392288636899139 RRLPKRKML 9 Unmodified _RRLPKRKML_ 0 0 0 REV__ENST00000320574.9_2_12:133254249-133254288:-|nuORF REV__ENST00000320574.9_2_12:133254249-133254288:-|nuORF MSMS UPN48_class_I_Rep_2 6 599.0842895507812 2 599.389877 1196.7652 NaN NaN NaN NaN NaN NaN NaN 28.19 1 31.821 31.321 32.321 3.6311 0 0 0 0.4029 1 3848 3848 0 0 1 + 38313 21734 24239 24250 43495 43495 0.17468823289664215 RRLPYVKG 8 Unmodified _RRLPYVKG_ 0 0 0 REV__L1ME3B_dup6563|chr14:105896883-105897254:-|1.8276150990720668|0.0093186082293314|7.62|146.0|23|2|anti-sense REV__L1ME3B_dup6563|chr14:105896883-105897254:-|1.8276150990720668|0.0093186082293314|7.62|146.0|23|2|anti-sense MSMS UPN46_class_I_Rep_3 1 494.8194274902344 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 20.785 1 20.785 20.285 21.285 0 0 0 0 0.40746 1 2219 2219 0.69038 0 1 + 38314 28076 24240 24251 43496 43496 0.10348879016555657 RRLPYVTRERI 11 Unmodified _RRLPYVTRERI_ 0 0 0 REV__ENST00000463670.5_1_1:156252735-156254976:+|nuORF REV__ENST00000463670.5_1_1:156252735-156254976:+|nuORF MSMS UPN47_class_I_Rep_1 2 486.95941162109375 3 486.959915 1457.85791 NaN NaN NaN NaN NaN NaN NaN 95.529 1 99.294 98.794 99.794 3.7648 0 0 0 0.38417 1 23712 23712 0.094841 0 1 + 38315 22450 24241 24252 43497 43497 0.14729999556698203 RRLQHQRLR 9 Unmodified _RRLQHQRLR_ 0 0 0 ENST00000262304.8_1_16:2141877-2142581:-|nuORF ENST00000262304.8_1_16:2141877-2142581:-|nuORF ENST00000262304.8_1_16:2141877-2142581:-|nuORF MSMS UPN48_class_I_Rep_1 5 631.8853149414062 2 631.886878 1261.7592 NaN NaN NaN NaN NaN NaN NaN 79.563 1 83.111 82.611 83.611 3.5487 0 0 0 0.39518 1 18997 18997 1.8442 0 1 38316 5965 24242 24253 43498 43498 0.13879441102335477 RRLQLHGVQ 9 Unmodified _RRLQLHGVQ_ 0 0 0 ENST00000578774.1_1_17:38517261-38520175:+|nuORF ENST00000578774.1_1_17:38517261-38520175:+|nuORF ENST00000578774.1_1_17:38517261-38520175:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 553.8306274414062 2 553.830706 1105.64686 0.52457 0.00029052 -1.5591 -0.00086349 -1.0346 -0.00057297 553.8296903006221 82.891 0.18111 86.289 86.229 86.41 3.3984 39 23 2 0 0 0 0.48846 1 20667 20667 1.8442 0.51471 1 99020 38317 7547 24243 24254 43499 43499 0.09826167305527633 RRLRAERRL 9 Unmodified _RRLRAERRL_ 0 0 0 REV__ENST00000470672.1_1_2:131100637-131102299:+|nuORF REV__ENST00000470672.1_1_2:131100637-131102299:+|nuORF MSMS UPN46_class_I_Rep_3 1 613.3902587890625 2 613.389254 1224.76395 NaN NaN NaN NaN NaN NaN NaN 93.238 1 93.238 92.738 93.738 0 0 0 0 0.39518 1 22591 22591 1.8442 0 1 + 38318 19198 24244 24255 43500 43500 0.16056325245108383 RRLRETCHE 9 Unmodified _RRLRETCHE_ 0 0 0 REV__MER21A_dup1562|chr15:65561600-65562487:-|1.1127788911857253|0.1958282490467104|2.51|151.0|18|3|sense REV__MER21A_dup1562|chr15:65561600-65562487:-|1.1127788911857253|0.1958282490467104|2.51|151.0|18|3|sense MSMS UPN47_class_I_Rep_1 2 600.3081665039062 2 600.306738 1198.59892 NaN NaN NaN NaN NaN NaN NaN 97.617 1 101.4 100.9 101.9 3.7861 0 0 0 0.39428 1 24186 24186 2.0598 0 1 + 38319 31181 24245 24256 43501 43501 0.0075672532316275465 RRLRKRPF 8 Unmodified _RRLRKRPF_ 0 0 0 REV__ENSG00000124104|ENST00000491381|SNX21 REV__ENSG00000124104|ENST00000491381|SNX21 MSMS UPN48_class_I_Rep_1 5 564.8627319335938 2 564.864883 1127.71521 NaN NaN NaN NaN NaN NaN NaN 66.24 1 69.692 69.192 70.192 3.4516 0 0 0 0.40746 1 15133 15133 0.69038 0 1 + 38320 18793 24246 24257 43502 43502 0.15646456676017806 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN46_class_I_Rep_3 1 484.7841491699219 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 115.91 1 115.91 115.41 116.41 0 0 0 0 0.40798 1 28677 28677 0 0 1 + 38321 21363 24247 24258 43503 43503 0.15520274144762425 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN47_class_I_Rep_1 2 484.8253479003906 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 21.973 1 25.647 25.147 26.147 3.6749 0 0 0 0.40798 1 2475 2475 0 0 1 + 38322 21363 24247 24258 43504 43504 0.15520274144762425 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN47_class_I_Rep_1 2 484.82586669921875 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 114.15 1 117.72 117.22 118.22 3.572 0 0 0 0.40798 1 28197 28197 0 0 1 + 38323 21363 24247 24258 43505 43505 0.15520274144762425 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN47_class_I_Rep_1 2 484.8255920410156 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 114.21 1 117.79 117.29 118.29 3.5809 0 0 0 0.40798 1 28214 28214 0 0 1 + 38324 21363 24247 24258 43506 43506 0.15520274144762425 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN47_class_I_Rep_3 4 485.2517395019531 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 20.169 1 23.521 23.021 24.021 3.3514 0 0 0 0.40798 1 2029 2029 0 0 1 + 38325 21363 24247 24258 43507 43507 0.15520274144762425 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN48_class_I_Rep_2 6 484.79132080078125 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.68 114.18 115.18 3.669 0 0 0 0.40798 1 26400 26400 0 0 1 + 38326 21363 24247 24258 43508 43508 0.15520274144762425 RRLRLAIA 8 Unmodified _RRLRLAIA_ 0 0 0 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4 MSMS UPN48_class_I_Rep_3 7 484.8253479003906 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 25.27 1 29.039 28.539 29.539 3.769 0 0 0 0.40798 1 3047 3047 0 0 1 + 38327 21363 24247 24258 43509 43509 0.15520274144762425 RRLRLEPQL 9 Unmodified _RRLRLEPQL_ 0 0 0 REV__ENST00000409331.6_1_2:85582684-85584214:+|nuORF REV__ENST00000409331.6_1_2:85582684-85584214:+|nuORF MSMS UPN47_class_I_Rep_2 3 590.8666381835938 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 96.062 1 99.537 99.037 100.04 3.4759 0 0 0 0.4007 1 23624 23624 0.52476 0 1 + 38328 22177 24248 24259 43510 43510 0.13735296028107769 RRLRLEPQL 9 Unmodified _RRLRLEPQL_ 0 0 0 REV__ENST00000409331.6_1_2:85582684-85584214:+|nuORF REV__ENST00000409331.6_1_2:85582684-85584214:+|nuORF MSMS UPN48_class_I_Rep_3 7 590.8671264648438 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 97.013 1 100.92 100.42 101.42 3.9084 0 0 0 0.4007 1 22996 22996 0.52476 0 1 + 38329 22177 24248 24259 43511 43511 0.13735296028107769 RRLRLLLL 8 Unmodified _RRLRLLLL_ 0 0 0 REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|74|2|sense REV__HERVIP10B3-int_dup57|chr4:99013920-99021508:-|1.5222426930976485|0.3134912638211469|2.28|151.0|74|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 526.3726806640625 2 526.874385 1051.73422 0.4452 0.00023457 -0.61164 -0.00032226 -0.16643 -8.769E-05 526.8739395356321 98.273 0.054008 102.06 102.02 102.07 3.7861 7 5 2 0 0 0 0.72333 1 24328 24328 0.79363 0 1 39065 + 38330 23739 24249 24260 43512 43512 0.21041993247081336 RRLRPPWLT 9 Unmodified _RRLRPPWLT_ 0 0 0 AluY_dup24356|chr4:39723358-39723667:-|1.2222542079933605|0.0054951103249248|7.8|151.0|6|2|sense AluY_dup24356|chr4:39723358-39723667:-|1.2222542079933605|0.0054951103249248|7.8|151.0|6|2|sense AluY_dup24356|chr4:39723358-39723667:-|1.2222542079933605|0.0054951103249248|7.8|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 597.8646240234375 2 597.864549 1193.71454 NaN NaN NaN NaN NaN NaN NaN 44.482 1 44.482 43.982 44.982 0 0 0 0 0.4007 1 8968 8968 0.52476 0 1 38331 394 24250 24261 43513 43513 0.12543617236292448 RRLRQEDDL 9 Unmodified _RRLRQEDDL_ 0 0 0 AluJo_dup67067|chr17:75374899-75375195:-|1.0771644238981315|0.0120803792469667|6.48|151.0|7|2|sense AluJo_dup67067|chr17:75374899-75375195:-|1.0771644238981315|0.0120803792469667|6.48|151.0|7|2|sense AluJo_dup67067|chr17:75374899-75375195:-|1.0771644238981315|0.0120803792469667|6.48|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 600.8253173828125 2 600.825818 1199.63708 NaN NaN NaN NaN NaN NaN NaN 105.83 1 109.51 109.01 110.01 3.6834 0 0 0 0.39428 1 25034 25034 2.0598 0 1 38332 123 24251 24262 43514 43514 0.045249345094589444 RRLRQWRWRPF 11 Unmodified _RRLRQWRWRPF_ 0 0 0 ENST00000341285.7_2_4:15656858-15657005:-|nuORF ENST00000341285.7_2_4:15656858-15657005:-|nuORF ENST00000341285.7_2_4:15656858-15657005:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 552.9886474609375 3 552.986798 1655.93856 -0.19499 -0.00010783 2.9026 0.0016051 2.7076 0.0014973 552.9887434164002 12.98 0.15863 12.98 12.921 13.079 0 21 12 3 0 0 0 0.68583 1 265 265 0 0 1 36964 38333 6232 24252 24263 43515 43515 0.13683325390275058 RRLRRPPH 8 Unmodified _RRLRRPPH_ 0 0 0 ENSG00000170128|ENST00000304244|GPR25 ENSG00000170128|ENST00000304244|GPR25 ENSG00000170128|ENST00000304244|GPR25 MULTI-MSMS UPN46_class_I_Rep_3 1 544.8247680664062 2 544.339033 1086.66351 0.37848 0.00020602 1.0358 0.00056381 1.4143 0.00076984 544.337787042358 92.953 0.046906 92.953 92.932 92.979 0 5 3 2 0 0 0 0.82752 1 22520 22520 0.69038 0 1 66106 38334 4455 24253 24264 43516 43516 0.12364712982116544 RRLRRPWGE 9 Unmodified _RRLRRPWGE_ 0 0 0 REV__ENST00000489456.1_1_2:220434036-220439523:+|nuORF REV__ENST00000489456.1_1_2:220434036-220439523:+|nuORF MSMS UPN48_class_I_Rep_3 7 613.3523559570312 2 613.35488 1224.69521 NaN NaN NaN NaN NaN NaN NaN 74.073 1 77.623 77.123 78.123 3.5505 0 0 0 0.39518 1 17351 17351 1.8442 0 1 + 38335 22619 24254 24265 43517 43517 0.09184660945379619 RRLRRSRGPR 10 Unmodified _RRLRRSRGPR_ 0 0 0 REV__ENST00000515045.1_1_5:177059676-177099177:-|nuORF REV__ENST00000515045.1_1_5:177059676-177099177:-|nuORF MSMS UPN48_class_I_Rep_2 6 437.26690673828125 3 437.27646 1308.80755 NaN NaN NaN NaN NaN NaN NaN 51.407 1 55.074 54.574 55.574 3.6679 0 0 0 0.53105 1 10594 10594 3.3196 1.2336 1 + 38336 22762 24255 24266 43518 43518 0.1654993474226103 RRLRRSRGPR 10 Unmodified _RRLRRSRGPR_ 0 0 0 REV__ENST00000515045.1_1_5:177059676-177099177:-|nuORF REV__ENST00000515045.1_1_5:177059676-177099177:-|nuORF MSMS UPN48_class_I_Rep_2 6 437.2676086425781 3 437.27646 1308.80755 NaN NaN NaN NaN NaN NaN NaN 51.482 1 55.15 54.65 55.65 3.6679 0 0 0 0.53105 1 10616 10616 1.5923 0.13716 1 + 38337 22762 24255 24266 43519 43519 0.1654993474226103 RRLSGELI 8 Unmodified _RRLSGELI_ 0 0 0 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 MULTI-MSMS UPN48_class_I_Rep_2 6 472.2875061035156 2 472.287808 942.561064 0.21166 9.9966E-05 0.053907 2.546E-05 0.26557 0.00012543 472.28780679743863 87.875 0.54901 91.603 91.42 91.969 3.7279 79 66 2 0 0 0 0.82752 1 20956 20956 2.5775 0 1 155420 38338 5044 24256 24267 43520 43520 0.08748582400005489 RRLSLGLQ 8 Unmodified _RRLSLGLQ_ 0 0 0 REV__nc|ENSG00000101191|Q9BTC0-2|DIDO1 REV__nc|ENSG00000101191|Q9BTC0-2|DIDO1 MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 89.74 1 93.197 92.697 93.697 3.4571 0 0 0 0.40404 1 22289 22289 5.2307 0 1 + 38339 18151 24257 24268 43521 43521 0.10392288636899139 RRLSNIAI 8 Unmodified _RRLSNIAI_ 0 0 0 REV__L1MA10_dup1281|chr4:174290154-174291782:-|1.7672423148862386|0.045326739838862|5.28|151.0|60|3|sense REV__L1MA10_dup1281|chr4:174290154-174291782:-|1.7672423148862386|0.045326739838862|5.28|151.0|60|3|sense MSMS UPN47_class_I_Rep_3 4 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 88.289 1 91.676 91.176 92.176 3.3873 0 0 0 0.40157 1 22142 22142 7.2892 0 1 + 38340 24809 24258 24269 43522 43522 0.10392288636876401 RRLSRRKS 8 Unmodified _RRLSRRKS_ 0 0 0 ENST00000528037.1_1_11:61891511-61905356:+|nuORF;nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP ENST00000528037.1_1_11:61891511-61905356:+|nuORF ENST00000528037.1_1_11:61891511-61905356:+|nuORF MSMS UPN46_class_I_Rep_3 1 529.7525634765625 2 529.836323 1057.65809 NaN NaN NaN NaN NaN NaN NaN 14.275 1 14.275 13.775 14.775 0 0 0 0 0.40746 1 593 593 0.69038 0 1 38341 3545 24259 24270 43523 43523 0.13156989399635677 RRLVGWGG 8 Unmodified _RRLVGWGG_ 0 0 0 nc|ENSG00000106948|Q7Z591-6|AKNA nc|ENSG00000106948|Q7Z591-6|AKNA nc|ENSG00000106948|Q7Z591-6|AKNA MULTI-MSMS UPN47_class_I_Rep_3 4 450.7604064941406 2 450.761761 899.508969 -0.17356 -7.8236E-05 -1.755 -0.00079109 -1.9286 -0.00086933 450.76077193010656 117.54 0.19334 120.98 120.88 121.07 3.4425 24 18 2 0 0 0 0.82752 1 28970 28970 2.8892 2.0956 1 17295 38342 16656 24260 24271 43524 43524 0.05519463776897737 RRLVGWGG 8 Unmodified _RRLVGWGG_ 0 0 0 nc|ENSG00000106948|Q7Z591-6|AKNA nc|ENSG00000106948|Q7Z591-6|AKNA nc|ENSG00000106948|Q7Z591-6|AKNA MSMS UPN48_class_I_Rep_1 5 450.77191162109375 2 450.761761 899.508969 NaN NaN NaN NaN NaN NaN NaN 119.54 1 123.16 122.66 123.66 3.6189 0 0 0 0.40581 1 29179 29179 2.8892 2.0956 1 38343 16656 24260 24271 43525 43525 0.05519463776897737 RRLWCKTVIKL 11 Unmodified _RRLWCKTVIKL_ 0 0 0 REV__L1MD1_dup37|chr1:19091467-19092341:+|1.5257640080608477|0.3514355612016839|2.12|151.0|2|1|sense REV__L1MD1_dup37|chr1:19091467-19092341:+|1.5257640080608477|0.3514355612016839|2.12|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 472.6270446777344 3 472.627108 1414.85949 NaN NaN NaN NaN NaN NaN NaN 83.207 1 86.746 86.246 87.246 3.5386 0 0 0 0.38417 1 20804 20804 0.094841 0 1 + 38344 27328 24261 24272 43526 43526 0.16865917321115376 RRMDKFYC 8 Unmodified _RRMDKFYC_ 0 0 0 L1ME3B_dup5986|chr12:120787595-120788281:-|1.126432481626811|0.0394402222114997|4.84|151.0|5|1|sense L1ME3B_dup5986|chr12:120787595-120788281:-|1.126432481626811|0.0394402222114997|4.84|151.0|5|1|sense L1ME3B_dup5986|chr12:120787595-120788281:-|1.126432481626811|0.0394402222114997|4.84|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 559.2918701171875 2 559.765329 1117.5161 NaN NaN NaN NaN NaN NaN NaN 52.024 1 55.358 54.858 55.858 3.3332 0 0 0 0.40746 1 11574 11574 0.69038 0 1 38345 12724 24262 24273 43527 43527 -0.03795307729205888 RRMGSWTIP 9 Unmodified _RRMGSWTIP_ 0 0 0 HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|136|3|anti-sense HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|136|3|anti-sense HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|136|3|anti-sense MSMS UPN47_class_I_Rep_1 2 552.2933349609375 2 552.292568 1102.57058 NaN NaN NaN NaN NaN NaN NaN 102.57 1 106.35 105.85 106.85 3.7888 0 0 0 0.39428 1 25241 25241 2.0598 0 1 38346 8186 24263 24274 43528 43528 0.023400274138793975 RRMHDLKY 8 Unmodified _RRMHDLKY_ 0 0 0 REV__ENST00000497393.1_1_3:120469390-120469879:+|nuORF REV__ENST00000497393.1_1_3:120469390-120469879:+|nuORF MSMS UPN48_class_I_Rep_3 7 559.7955322265625 2 559.798017 1117.58148 NaN NaN NaN NaN NaN NaN NaN 40.337 1 43.988 43.488 44.488 3.6509 0 0 0 0.40643 1 7160 7160 2.0598 0.40713 1 + 38347 19716 24264 24275 43529 43529 0.027394297881528473 RRMHPPQGNFG 11 Unmodified _RRMHPPQGNFG_ 0 0 0 REV__ENSG00000085872|ENST00000546361|CHERP REV__ENSG00000085872|ENST00000546361|CHERP MSMS UPN48_class_I_Rep_2 6 648.8214721679688 2 648.822555 1295.63056 NaN NaN NaN NaN NaN NaN NaN 44.823 1 48.585 48.085 49.085 3.7617 0 0 0 0.38417 1 8587 8587 2.7352 1.2533 1 + 38348 17961 24265 24276 43530 43530 -0.00543281922909955 RRMIQFYF 8 Unmodified _RRMIQFYF_ 0 0 0 REV__nc|ENSG00000171310|Q9NPF2-2|CHST11 REV__nc|ENSG00000171310|Q9NPF2-2|CHST11 MSMS UPN48_class_I_Rep_3 7 580.8037719726562 2 580.805311 1159.59607 NaN NaN NaN NaN NaN NaN NaN 65.734 1 69.242 68.742 69.742 3.5077 0 0 0 0.4044 1 14877 14877 4.756 0.81161 1 + 38349 32059 24266 24277 43531 43531 0.02265501936290093 RRMKSLTCI 9 Unmodified _RRMKSLTCI_ 0 0 0 ENST00000514992.2_1_17:28928777-28942977:+|nuORF ENST00000514992.2_1_17:28928777-28942977:+|nuORF ENST00000514992.2_1_17:28928777-28942977:+|nuORF MSMS UPN46_class_I_Rep_3 1 554.2762451171875 2 554.309903 1106.60525 NaN NaN NaN NaN NaN NaN NaN 33.162 1 33.162 32.662 33.662 0 0 0 0 0.39518 1 5766 5766 1.8442 0.19162 1 38350 7199 24267 24278 43532 43532 0.056215272303006714 RRMLTIKRY 9 Unmodified _RRMLTIKRY_ 0 0 0 ENST00000473882.1_1_11:25610023-25610134:-|nuORF ENST00000473882.1_1_11:25610023-25610134:-|nuORF ENST00000473882.1_1_11:25610023-25610134:-|nuORF MSMS UPN46_class_I_Rep_3 1 618.873046875 2 618.871517 1235.72848 NaN NaN NaN NaN NaN NaN NaN 84.744 1 84.744 84.244 85.244 0 0 0 0 0.4007 1 20179 20179 0.52476 0 1 38351 6944 24268 24279 43533 43533 0.12004526673126747 RRMQSEWL 8 Unmodified _RRMQSEWL_ 0 0 0 REV__L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|57|2|sense REV__L1M4_dup15437|chr13:50921701-50924566:+|1.9236561498441869|0.1084325864259966|4.15|151.0|57|2|sense MSMS UPN47_class_I_Rep_2 3 553.74755859375 2 553.2822 1104.54985 NaN NaN NaN NaN NaN NaN NaN 71.226 1 74.516 74.016 75.016 3.2899 0 0 0 0.40643 1 17395 17395 2.0598 0.21551 1 + 38352 24376 24269 24280 43534 43534 0.0017543703420415113 RRMYILSF 8 Unmodified _RRMYILSF_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.2992553710938 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 66.85 1 70.301 69.801 70.801 3.4516 0 0 0 0.37681 1 15317 15317 15.847 1.9411 1 38353 13858 24270 24281 43535 43535 0.046260995620059475 RRMYILSF 8 Unmodified _RRMYILSF_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.2977294921875 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 66.928 1 70.379 69.879 70.879 3.4516 0 0 0 0.38112 1 15341 15341 14.838 1.7958 1 38354 13858 24270 24281 43536 43536 0.046260995620059475 RRMYILSF 8 Unmodified _RRMYILSF_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.2962036132812 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 66.607 1 70.094 69.594 70.594 3.4866 0 0 0 0.33644 1 15230 15230 25.399 2.663 1 38355 13858 24270 24281 43537 43537 0.046260995620059475 RRMYILSF 8 Unmodified _RRMYILSF_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.298583984375 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 66.643 1 70.129 69.629 70.629 3.4866 0 0 0 0.35715 1 15241 15241 20.454 2.3073 1 38356 13858 24270 24281 43538 43538 0.046260995620059475 RRMYILSF 8 Unmodified _RRMYILSF_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.2994995117188 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 66.868 1 70.365 69.865 70.865 3.4964 0 0 0 0.35715 1 15310 15310 20.454 2.3073 1 38357 13858 24270 24281 43539 43539 0.046260995620059475 RRMYILSF 8 Unmodified _RRMYILSF_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|138|2|anti-sense MSMS UPN48_class_I_Rep_3 7 543.3010864257812 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 66.841 1 70.349 69.849 70.849 3.5077 0 0 0 0.39996 1 15213 15213 7.9102 0 1 38358 13858 24270 24281 43540 43540 0.046260995620059475 RRNAIQKY 8 Unmodified _RRNAIQKY_ 0 0 0 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS UPN48_class_I_Rep_2 6 524.7346801757812 2 524.804157 1047.59376 NaN NaN NaN NaN NaN NaN NaN 38.851 1 42.581 42.081 43.081 3.7297 0 0 0 0.40625 1 6822 6822 2.3027 0 1 + 38359 20077 24271 24282 43541 43541 0.07186789522825165 RRNERDLIK 9 Unmodified _RRNERDLIK_ 0 0 0 REV__nc|ENSG00000162231|Q9UBU9-2|NXF1 REV__nc|ENSG00000162231|Q9UBU9-2|NXF1 MSMS UPN48_class_I_Rep_3 7 600.3528442382812 2 600.352003 1198.68945 NaN NaN NaN NaN NaN NaN NaN 65.259 1 68.767 68.267 69.267 3.5077 0 0 0 0.29868 1 14733 14733 10.824 0 1 + 38360 19918 24272 24283 43542 43542 0.098055176430762 RRNGGWKL 8 Unmodified _RRNGGWKL_ 0 0 0 HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|151|3|anti-sense HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|151|3|anti-sense HERVH-int_dup5539|chr19:36157752-36160577:-|3.823156380300935|0.4107328478745274|3.22|151.0|151|3|anti-sense MSMS UPN47_class_I_Rep_3 4 493.7850646972656 2 493.785767 985.556982 NaN NaN NaN NaN NaN NaN NaN 42.523 1 45.763 45.263 46.263 3.2394 0 0 0 0.40625 1 8733 8733 2.3027 0 1 38361 8164 24273 24284 43543 43543 0.06362537696941217 RRNGITIT 8 Unmodified _RRNGITIT_ 0 0 0 REV__L1PA13_dup3133|chr6:11347293-11349938:+|1.098016821310258|0.179690356710383|2.61|151.0|48|2|sense REV__L1PA13_dup3133|chr6:11347293-11349938:+|1.098016821310258|0.179690356710383|2.61|151.0|48|2|sense MSMS UPN46_class_I_Rep_3 1 465.77764892578125 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 77.515 1 77.515 77.015 78.015 0 0 0 0 0.40746 1 18123 18123 0.69038 0 1 + 38362 29094 24274 24285 43544 43544 0.07307411740168845 RRNGQLVG 8 Unmodified _RRNGQLVG_ 0 0 0 Tigger1_dup7879|chr10:1112064-1113950:+|1.9161549903336428|0.1555517619717965|3.62|151.0|124|3|anti-sense Tigger1_dup7879|chr10:1112064-1113950:+|1.9161549903336428|0.1555517619717965|3.62|151.0|124|3|anti-sense Tigger1_dup7879|chr10:1112064-1113950:+|1.9161549903336428|0.1555517619717965|3.62|151.0|124|3|anti-sense MSMS UPN47_class_I_Rep_1 2 450.2626647949219 2 450.262125 898.509697 NaN NaN NaN NaN NaN NaN NaN 63.806 1 67.162 66.662 67.662 3.3557 0 0 0 0.40625 1 15121 15121 2.3027 0 1 38363 33184 24275 24286 43545 43545 0.05638258425949516 RRNHIHHG 8 Unmodified _RRNHIHHG_ 0 0 0 nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11;FBXO11|p.N811Sfs*3|1|0.49|ENSG00000138081|chr2:47809615-47809616|-/GA|frameshift_variant;nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11 nc|ENSG00000138081|Q86XK2-2|FBXO11 nc|ENSG00000138081|Q86XK2-2|FBXO11 MSMS UPN47_class_I_Rep_3 4 513.77685546875 2 513.776265 1025.53798 NaN NaN NaN NaN NaN NaN NaN 16.707 1 20.069 19.569 20.569 3.3619 0 0 0 0.40738 1 1088 1088 0.79363 0 1 38364 3062 24276 24287 43546 43546 0.026230011258803643 RRNIQIHN 8 Unmodified _RRNIQIHN_ 0 0 0 L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|112|3|sense L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|112|3|sense L1MEg_dup6864|chr7:131335567-131338619:-|3.194353027450448|0.0502781101712423|5.99|151.0|112|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 525.800537109375 2 525.799406 1049.58426 0.46118 0.00024249 2.5642 0.0013482 3.0253 0.0015907 525.8003535145285 60.42 0.031906 63.894 63.878 63.91 3.4737 4 2 2 0 0 0 0.82752 1 13368 13368 2.3027 0 1 83304 38365 13422 24277 24288 43547 43547 0.06145021237330184 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.95892333984375 3 495.958908 1484.85489 0.3068 0.00015216 0.11035 5.4728E-05 0.41714 0.00020689 495.9587190539077 99.754 0.19142 99.754 99.568 99.759 0 61 22 5 0 0 0 0.68081 1 24289 24289 0.45452 0.046251 1 540100 38366 14793 24278 24289 43548 43548 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.9587707519531 3 495.958908 1484.85489 0.3066 0.00015206 -0.08686 -4.3079E-05 0.21974 0.00010898 495.95876114811887 100.05 0.18091 100.05 99.985 100.17 0 32 22 2 0 0 0 0.68478 1 24394 24394 0.094841 0 1 816270 38367 14793 24278 24289 43549 43549 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 495.95892333984375 3 495.958908 1484.85489 0.30657 0.00015204 -0.15067 -7.4724E-05 0.1559 7.7321E-05 495.958792738183 100.2 0.11487 100.2 100.16 100.27 0 16 13 2 0 0 0 0.68478 1 24424 24424 0.094841 0 1 167990 38368 14793 24278 24289 43550 43550 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MSMS UPN46_class_I_Rep_3 1 495.95904541015625 3 495.958908 1484.85489 NaN NaN NaN NaN NaN NaN NaN 99.389 1 99.389 98.889 99.889 0 0 0 0 0.38417 1 24211 24211 0.094841 0 1 38369 14793 24278 24289 43551 43551 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 495.9591064453125 3 495.958908 1484.85489 0.17363 8.6113E-05 -0.051029 -2.5308E-05 0.1226 6.0805E-05 495.9587730564716 94.222 0.94431 97.842 97.188 98.132 3.6208 169 109 2 0 0 0 0.68478 2 22634 22634;22742 0.094841 0 1 224790 38370 14793 24278 24289 43552;43553 43552 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 495.958908 1484.85489 0.30661 0.00015206 0.35001 0.00017359 0.65662 0.00032566 495.9591657387712 97.945 0.071785 97.945 97.921 97.993 0 0.10442 0.00075991 NaN 0.094841 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 75537 38371 14793 24278 24289 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 495.958908 1484.85489 0.27867 0.00013821 -0.92677 -0.00045964 -0.6481 -0.00032143 495.9584917038023 94.163 0.29443 97.911 97.686 97.981 3.7487 0.071211 -0.0011398 NaN 0.094841 45 38 2 NaN NaN NaN NaN 0 NaN NaN 0 77624 38372 14793 24278 24289 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958908 1484.85489 0.44663 0.00022151 -0.83176 -0.00041252 -0.38513 -0.00019101 495.95841989626575 94.391 0.23185 97.863 97.772 98.004 3.472 0.023043 -0.00099843 NaN 0.094841 51 32 2 NaN NaN NaN NaN 0 NaN NaN 0 109970 38373 14793 24278 24289 0.13186169222581157 RRNKGWRTKRQ 11 Unmodified _RRNKGWRTKRQ_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|96|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 495.958908 1484.85489 0.27952 0.00013863 -0.22141 -0.00010981 0.058112 2.8821E-05 495.95869395164556 94.233 0.23945 97.639 97.474 97.714 3.4068 -0.20087 -9.0302E-05 NaN 0.094841 45 33 2 NaN NaN NaN NaN 0 NaN NaN 0 87176 38374 14793 24278 24289 0.13186169222581157 RRNKNRHK 8 Unmodified _RRNKNRHK_ 0 0 0 ENST00000409202.7_1_2:68962069-68962258:+|nuORF ENST00000409202.7_1_2:68962069-68962258:+|nuORF ENST00000409202.7_1_2:68962069-68962258:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.832275390625 2 554.831572 1107.64859 NaN NaN NaN NaN NaN NaN NaN 78.336 1 81.765 81.265 82.265 3.4289 0 0 0 0.40746 1 19472 19472 0.69038 0 1 38375 6622 24279 24290 43554 43554 0.09907221114121967 RRNKNVYV 8 Unmodified _RRNKNVYV_ 0 0 0 L1MB7_dup17917|chr15:30590649-30591189:-|1.2586432958050189|0.0225053125430051|5.81|142.0|1|1|sense L1MB7_dup17917|chr15:30590649-30591189:-|1.2586432958050189|0.0225053125430051|5.81|142.0|1|1|sense L1MB7_dup17917|chr15:30590649-30591189:-|1.2586432958050189|0.0225053125430051|5.81|142.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 524.8052368164062 2 524.804157 1047.59376 NaN NaN NaN NaN NaN NaN NaN 61.172 1 64.553 64.053 65.053 3.3815 0 0 0 0.40404 1 14325 14325 5.2307 0 1 38376 10751 24280 24291 43555 43555 0.07186789522825165 RRNLCWFC 8 Unmodified _RRNLCWFC_ 0 0 0 MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|8|1|sense MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|8|1|sense MER44C_dup637|chr11:122731041-122731808:-|3.99260493915911|0.0153582412458606|8.02|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 549.3392333984375 2 549.260213 1096.50587 NaN NaN NaN NaN NaN NaN NaN 65.541 1 68.72 68.22 69.22 3.1795 0 0 0 0.40604 1 15747 15747 2.5775 0.27475 1 38377 15990 24281 24292 43556 43556 -0.038518706637660216 RRNPRKERIR 10 Unmodified _RRNPRKERIR_ 0 0 0 L1ME1_dup6956|chr3:158378000-158378940:-|1.2565796855109037|0.0113532924478128|6.79|151.0|28|3|sense L1ME1_dup6956|chr3:158378000-158378940:-|1.2565796855109037|0.0113532924478128|6.79|151.0|28|3|sense L1ME1_dup6956|chr3:158378000-158378940:-|1.2565796855109037|0.0113532924478128|6.79|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 460.78253173828125 3 460.951754 1379.83343 NaN NaN NaN NaN NaN NaN NaN 40.975 1 40.975 40.475 41.475 0 0 0 0 0.53105 1 7992 7992 0.69767 0.2894 1 38378 12433 24282 24293 43557 43557 0.15870784193884901 RRNPTRQR 8 Unmodified _RRNPTRQR_ 0 0 0 ENST00000581080.1_1_17:38497421-38497688:-|nuORF ENST00000581080.1_1_17:38497421-38497688:-|nuORF ENST00000581080.1_1_17:38497421-38497688:-|nuORF MSMS UPN48_class_I_Rep_1 5 542.317138671875 2 542.315755 1082.61696 NaN NaN NaN NaN NaN NaN NaN 75.768 1 79.267 78.767 79.767 3.4996 0 0 0 0.40746 1 17970 17970 0.69038 0 1 38379 7554 24283 24294 43558 43558 0.07895228360166584 RRNREKQF 8 Unmodified _RRNREKQF_ 0 0 0 L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|69|1|anti-sense L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|69|1|anti-sense L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|69|1|anti-sense MSMS UPN46_class_I_Rep_3 1 567.3012084960938 2 567.317963 1132.62137 NaN NaN NaN NaN NaN NaN NaN 45.719 1 45.719 45.219 46.219 0 0 0 0 0.39996 1 9322 9322 7.9102 0 1 38380 14945 24284 24295 43559 43559 0.06036692783095532 RRNREKQF 8 Unmodified _RRNREKQF_ 0 0 0 L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|69|1|anti-sense L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|69|1|anti-sense L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|69|1|anti-sense MSMS UPN46_class_I_Rep_3 1 567.3021240234375 2 567.317963 1132.62137 NaN NaN NaN NaN NaN NaN NaN 45.975 1 45.975 45.475 46.475 0 0 0 0 0.39996 1 9390 9390 7.9102 0 1 38381 14945 24284 24295 43560 43560 0.06036692783095532 RRNRRGKL 8 Unmodified _RRNRRGKL_ 0 0 0 nc|ENSG00000158220|A0FGR9-2|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF;ENSG00000158220|ENST00000389567|ESYT3 nc|ENSG00000158220|A0FGR9-2|ESYT3 nc|ENSG00000158220|A0FGR9-2|ESYT3 MSMS UPN48_class_I_Rep_1 5 528.6724853515625 2 528.33649 1054.65843 NaN NaN NaN NaN NaN NaN NaN 92.82 1 96.444 95.944 96.944 3.624 0 0 0 0.40746 1 22302 22302 0.69038 0 1 38382 3793 24285 24296 43561 43561 0.1332840911952644 RRNRRKRKPEW 11 Unmodified _RRNRRKRKPEW_ 0 0 0 REV__ENSG00000152465.18,NMT2,chr10,-,I10.1,15112964,15119342|59|7.65|3|intron REV__ENSG00000152465.18,NMT2,chr10,-,I10.1,15112964,15119342|59|7.65|3|intron MSMS UPN46_class_I_Rep_3 1 527.9819946289062 3 527.981824 1580.92364 NaN NaN NaN NaN NaN NaN NaN 84.659 1 84.659 84.159 85.159 0 0 0 0 0.38417 1 20154 20154 0 0 1 + 38383 19682 24286 24297 43562 43562 0.15641833522317938 RRNRTYLW 8 Unmodified _RRNRTYLW_ 0 0 0 REV__MLT1A0_dup19930|chr21:6346824-6347130:+|1.4731955048052905|0.2615376055490652|2.49|150.0|11|3|sense REV__MLT1A0_dup19930|chr21:6346824-6347130:+|1.4731955048052905|0.2615376055490652|2.49|150.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 582.822998046875 2 582.822881 1163.63121 NaN NaN NaN NaN NaN NaN NaN 36.205 1 39.716 39.216 40.216 3.5101 0 0 0 0.40746 1 6020 6020 0.69038 0 1 + 38384 31592 24287 24298 43563 43563 0.05593880788455863 RRNRVFVA 8 Unmodified _RRNRVFVA_ 0 0 0 ENST00000355947.6_1_7:99489387-99489726:-|nuORF ENST00000355947.6_1_7:99489387-99489726:-|nuORF ENST00000355947.6_1_7:99489387-99489726:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 509.30615234375 2 509.306867 1016.59918 0.31789 0.0001619 -1.5387 -0.00078366 -1.2208 -0.00062175 509.3059698543293 87.983 0.13124 87.983 87.907 88.038 0 18 13 2 0 0 0 0.82752 1 21100 21100 0.79363 0 1 131490 38385 6283 24288 24299 43564 43564 0.09154513105318074 RRNRWKER 8 Unmodified _RRNRWKER_ 0 0 0 REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|1|1|sense REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 600.8442993164062 2 600.844679 1199.67481 NaN NaN NaN NaN NaN NaN NaN 73.626 1 73.626 73.126 74.126 0 0 0 0 0.40746 1 17074 17074 0.69038 0 1 + 38386 24043 24289 24300 43565 43565 0.08295490285581764 RRNSHGKN 8 Unmodified _RRNSHGKN_ 0 0 0 REV__L1PA14_dup30|chr1:35515332-35518719:+|1.1544085372851909|0.0363248881739887|4.99|150.0|82|3|sense REV__L1PA14_dup30|chr1:35515332-35518719:+|1.1544085372851909|0.0363248881739887|4.99|150.0|82|3|sense MSMS UPN47_class_I_Rep_2 3 484.7611083984375 2 484.760281 967.506009 NaN NaN NaN NaN NaN NaN NaN 19.468 1 22.864 22.364 23.364 3.3963 0 0 0 0.40746 1 1841 1841 0.69038 0 1 + 38387 29165 24290 24301 43566 43566 0.020955886520937383 RRNVGLGV 8 Unmodified _RRNVGLGV_ 0 0 0 ENST00000570439.1_1_17:7251916-7252060:+|nuORF ENST00000570439.1_1_17:7251916-7252060:+|nuORF ENST00000570439.1_1_17:7251916-7252060:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 435.76690673828125 2 435.767043 869.519533 0.099858 4.3515E-05 -0.034032 -1.483E-05 0.065826 2.8685E-05 435.76692608008307 78.73 1.0701 82.363 81.965 83.036 3.6331 231 127 2 0 0 0 0.82752 1 18732 18732 5.2307 0 1 420760 38388 7513 24291 24302 43567 43567 0.07955446431344626 RRNWGLIF 8 Unmodified _RRNWGLIF_ 0 0 0 L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|108|3|sense;L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|110|3|sense L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|108|3|sense L1PB1_dup12781|chr21:34496373-34499962:-|2.3865018005507577|0.1548222150861151|3.95|151.0|108|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.3037719726562 2 531.303793 1060.59303 -0.0030184 -1.6037E-06 -1.7169 -0.00091222 -1.72 -0.00091382 531.303011334545 26.425 0.34285 26.425 26.271 26.614 0 47 31 2 0 0 0 0.82752 1 3823 3823 0.79363 0 1 63459 38389 15046 24292 24303 43568 43568 0.06515994873780073 RRNWYRLC 8 Unmodified _RRNWYRLC_ 0 0 0 REV__ENST00000372007.9_2_X:110339616-110346458:+|nuORF REV__ENST00000372007.9_2_X:110339616-110346458:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 583.8024291992188 2 583.803634 1165.59272 0.04656 2.7182E-05 -0.88043 -0.000514 -0.83387 -0.00048682 583.8030613847345 28.236 0.62048 31.735 31.473 32.093 3.4986 78 55 2 0 0 0 0.82752 1 4354 4354 2.3027 0.65011 1 70473 + 38390 21970 24293 24304 43569 43569 0.016542518822916463 RRPALKTT 8 Unmodified _RRPALKTT_ 0 0 0 nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B nc|ENSG00000196912|Q8N2N9-3|ANKRD36B nc|ENSG00000196912|Q8N2N9-3|ANKRD36B MSMS UPN47_class_I_Rep_3 4 471.7949523925781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 19.273 1 22.624 22.124 23.124 3.3514 0 0 0 0.40746 1 1769 1769 0.69038 0 1 38391 5335 24294 24305 43570 43570 0.10392288636899139 RRPALKTT 8 Unmodified _RRPALKTT_ 0 0 0 nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B nc|ENSG00000196912|Q8N2N9-3|ANKRD36B nc|ENSG00000196912|Q8N2N9-3|ANKRD36B MSMS UPN47_class_I_Rep_3 4 471.7961120605469 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 26.092 1 29.44 28.94 29.94 3.3478 0 0 0 0.40746 1 3767 3767 0.69038 0 1 38392 5335 24294 24305 43571 43571 0.10392288636899139 RRPALQQQ 8 Unmodified _RRPALQQQ_ 0 0 0 ENST00000560148.5_2_15:74495378-74501835:+|nuORF ENST00000560148.5_2_15:74495378-74501835:+|nuORF ENST00000560148.5_2_15:74495378-74501835:+|nuORF MSMS UPN46_class_I_Rep_3 1 498.7865295410156 2 498.788507 995.562461 NaN NaN NaN NaN NaN NaN NaN 85.994 1 85.994 85.494 86.494 0 0 0 0 0.40746 1 20544 20544 0.69038 0 1 38393 7453 24295 24306 43572 43572 0.06450216488758542 RRPALVMH 8 Unmodified _RRPALVMH_ 0 0 0 REV__ENST00000585371.1_1_19:4428663-4429284:+|nuORF REV__ENST00000585371.1_1_19:4428663-4429284:+|nuORF MSMS UPN47_class_I_Rep_1 2 490.2857971191406 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 54.763 1 58.265 57.765 58.765 3.5014 0 0 0 0.40738 1 12378 12378 0.79363 0 1 + 38394 20229 24296 24307 43573 43573 0.06440365967637263 RRPAPGGV 8 Unmodified _RRPAPGGV_ 0 0 0 REV__SVA_D_dup854|chr10:92974545-92976676:+|1.3270563961929644|0.4274885378959713|1.63|151.0|24|2|sense REV__SVA_D_dup854|chr10:92974545-92976676:+|1.3270563961929644|0.4274885378959713|1.63|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 405.2404479980469 2 405.240661 808.46677 -0.01125 -4.5588E-06 0.11619 4.7086E-05 0.10494 4.2527E-05 405.240640593058 76.664 1.1967 80.079 79.526 80.723 3.4149 196 106 2 0 0 0 0.82752 1 19077 19077 0.69038 0 1 724950 + 38395 32196 24297 24308 43574 43574 0.054874883685215536 RRPAPGKASG 10 Unmodified _RRPAPGKASG_ 0 0 0 ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN ENST00000557787.1_1_15:89164581-89170043:+|nuORF ENST00000557787.1_1_15:89164581-89170043:+|nuORF MSMS UPN48_class_I_Rep_1 5 498.7863464355469 2 498.788507 995.562461 NaN NaN NaN NaN NaN NaN NaN 69.897 1 73.357 72.857 73.857 3.4598 0 0 0 0.53105 1 16248 16248 1.3295 0.63916 1 38396 4906 24298 24309 43575 43575 0.06450216488758542 RRPAPLRP 8 Unmodified _RRPAPLRP_ 0 0 0 ENST00000530761.5_1_11:117857127-117857250:+|nuORF;ENST00000533700.5_1_11:117857127-117857426:+|nuORF;ENST00000227752.7_1_11:117857127-117859130:+|nuORF;ENST00000534574.5_1_11:117857127-117857442:+|nuORF ENST00000530761.5_1_11:117857127-117857250:+|nuORF ENST00000530761.5_1_11:117857127-117857250:+|nuORF MSMS UPN48_class_I_Rep_3 7 481.7874755859375 2 481.80396 961.593367 NaN NaN NaN NaN NaN NaN NaN 111.75 1 115.41 114.91 115.91 3.6614 0 0 0 0.40746 1 26533 26533 0.69038 0 1 38397 5878 24299 24310 43576 43576 0.1110341459365145 RRPDPDSDE 9 Unmodified _RRPDPDSDE_ 0 0 0 ENST00000467214.1_1_10:6146929-6148209:+|nuORF;ENSG00000134453|ENST00000379888|RBM17 ENST00000467214.1_1_10:6146929-6148209:+|nuORF ENST00000467214.1_1_10:6146929-6148209:+|nuORF MSMS UPN47_class_I_Rep_2 3 543.7431640625 2 543.744159 1085.47377 NaN NaN NaN NaN NaN NaN NaN 114.5 1 118 117.5 118.5 3.5039 0 0 0 0.38639 1 27884 27884 3.9444 0 1 38398 2850 24300 24311 43577 43577 -0.06555288332242526 RRPELLVRVE 10 Unmodified _RRPELLVRVE_ 0 0 0 REV__AluJb_dup16510|chr2:113947370-113947662:+|1.1924593948781848|0.0837589574388209|3.83|151.0|10|3|sense REV__AluJb_dup16510|chr2:113947370-113947662:+|1.1924593948781848|0.0837589574388209|3.83|151.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 633.8876953125 2 633.885678 1265.7568 NaN NaN NaN NaN NaN NaN NaN 54.548 1 58.13 57.63 58.63 3.5817 0 0 0 0.53105 1 11540 11540 1.4819 0.15237 1 + 38399 16928 24301 24312 43578 43578 0.13455547854050565 RRPGHRGRK 9 Unmodified _RRPGHRGRK_ 0 0 0 REV__ENSG00000123569|ENST00000217926|H2BW1 REV__ENSG00000123569|ENST00000217926|H2BW1 MSMS UPN48_class_I_Rep_3 7 560.3396606445312 2 560.339564 1118.66457 NaN NaN NaN NaN NaN NaN NaN 106.98 1 110.67 110.17 111.17 3.6899 0 0 0 0.4029 1 25218 25218 0 0 1 + 38400 18784 24302 24313 43579 43579 0.10998927351033672 RRPHSVLRRHQ 11 Unmodified _RRPHSVLRRHQ_ 0 0 0 REV__ENSG00000141622|ENST00000269439|RNF165 REV__ENSG00000141622|ENST00000269439|RNF165 MULTI-MSMS UPN48_class_I_Rep_2 6 481.28363037109375 3 481.283503 1440.82868 0.23786 0.00011448 -0.02504 -1.2051E-05 0.21282 0.00010242 481.283432795858 94.401 1.3316 98.177 97.432 98.764 3.7761 339 182 3 0 0 0 0.6756 1 22420 22420 0.92553 0.92553 1 505130 + 38401 19386 24303 24314 43580 43580 0.1258990005112537 RRPHSVLRRHQ 11 Unmodified _RRPHSVLRRHQ_ 0 0 0 REV__ENSG00000141622|ENST00000269439|RNF165 REV__ENSG00000141622|ENST00000269439|RNF165 MULTI-MATCH UPN46_class_I_Rep_3 1 3 481.283503 1440.82868 0.26986 0.00012988 -0.25781 -0.00012408 0.012059 5.8039E-06 481.28332990165353 98.136 0.13628 98.136 98.057 98.193 0 -0.0049693 -0.00028871 NaN 0.92553 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 276050 + 38402 19386 24303 24314 0.1258990005112537 RRPHSVLRRHQ 11 Unmodified _RRPHSVLRRHQ_ 0 0 0 REV__ENSG00000141622|ENST00000269439|RNF165 REV__ENSG00000141622|ENST00000269439|RNF165 MULTI-MATCH UPN47_class_I_Rep_2 3 3 481.283503 1440.82868 0.37719 0.00018154 -0.11129 -5.3562E-05 0.2659 0.00012797 481.28344728749676 94.661 0.51849 98.133 98.023 98.541 3.472 -0.0080577 -7.7166E-05 NaN 0.92553 114 70 2 NaN NaN NaN NaN 0 NaN NaN 0 218440 + 38403 19386 24303 24314 0.1258990005112537 RRPIKYYI 8 Unmodified _RRPIKYYI_ 0 0 0 REV__L1MA6_dup806|chr3:15019244-15020054:+|1.973682115259716|0.1024860612577474|4.27|151.0|11|1|sense REV__L1MA6_dup806|chr3:15019244-15020054:+|1.973682115259716|0.1024860612577474|4.27|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 555.298583984375 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 83.216 1 86.628 86.128 87.128 3.4116 0 0 0 0.40738 1 20741 20741 0.79363 0 1 + 38404 25484 24304 24315 43581 43581 0.1057772122210281 RRPKRIRI 8 Unmodified _RRPKRIRI_ 0 0 0 ENST00000416823.1_1_22:29702661-29703048:+|nuORF ENST00000416823.1_1_22:29702661-29703048:+|nuORF ENST00000416823.1_1_22:29702661-29703048:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.871337890625 2 547.872708 1093.73086 NaN NaN NaN NaN NaN NaN NaN 33.443 1 36.963 36.463 37.463 3.5201 0 0 0 0.40746 1 5217 5217 0.69038 0 1 38405 6654 24305 24316 43582 43582 0.18774743193057475 RRPLGKSVQR 10 Unmodified _RRPLGKSVQR_ 0 0 0 REV__ENST00000566364.1_1_16:23400243-23404677:-|nuORF REV__ENST00000566364.1_1_16:23400243-23404677:-|nuORF MSMS UPN46_class_I_Rep_3 1 598.870361328125 2 598.870363 1195.72617 NaN NaN NaN NaN NaN NaN NaN 105.69 1 105.69 105.19 106.19 0 0 0 0 0.53105 1 25783 25783 0.40072 0 1 + 38406 20272 24306 24317 43583 43583 0.13613814259633727 RRPLLKED 8 Unmodified _RRPLLKED_ 0 0 0 REV__ENST00000366690.4_1_1:229424560-229431648:+|nuORF REV__ENST00000366690.4_1_1:229424560-229431648:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.8060302734375 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 88.483 1 91.87 91.37 92.37 3.3873 0 0 0 0.40753 1 22193 22193 0.6015 0 1 + 38407 21918 24307 24318 43584 43584 0.08640253945759468 RRPLVLAL 8 Unmodified _RRPLVLAL_ 0 0 0 REV__L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|81|1|anti-sense REV__L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_1 2 469.3283996582031 2 469.318912 936.62327 NaN NaN NaN NaN NaN NaN NaN 42.832 1 46.519 46.019 47.019 3.6875 0 0 0 0.40746 1 8747 8747 0.69038 0 1 + 38408 26849 24308 24319 43585 43585 0.15242353538963016 RRPPPYLA 8 Unmodified _RRPPPYLA_ 0 0 0 AluSx1_dup46594|chr7:140001426-140001691:-|1.1199771577364628|0.0130595976247385|6.42|151.0|18|3|anti-sense AluSx1_dup46594|chr7:140001426-140001691:-|1.1199771577364628|0.0130595976247385|6.42|151.0|18|3|anti-sense AluSx1_dup46594|chr7:140001426-140001691:-|1.1199771577364628|0.0130595976247385|6.42|151.0|18|3|anti-sense MSMS UPN48_class_I_Rep_1 5 485.28558349609375 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 39.72 1 43.225 42.725 43.725 3.5048 0 0 0 0.40738 1 7047 7047 0.79363 0 1 38409 318 24309 24320 43586 43586 0.07004903608174118 RRPQPLRNRR 10 Unmodified _RRPQPLRNRR_ 0 0 0 ENST00000549469.1_1_2:176973927-176983694:+|nuORF ENST00000549469.1_1_2:176973927-176983694:+|nuORF ENST00000549469.1_1_2:176973927-176983694:+|nuORF MSMS UPN48_class_I_Rep_1 5 450.27471923828125 3 450.276349 1347.80722 NaN NaN NaN NaN NaN NaN NaN 84.565 1 88.162 87.662 88.662 3.5973 0 0 0 0.53105 1 20244 20244 0.69767 0.1345 1 38410 7392 24310 24321 43587 43587 0.14722515022367588 RRPQPLRNRR 10 Unmodified _RRPQPLRNRR_ 0 0 0 ENST00000549469.1_1_2:176973927-176983694:+|nuORF ENST00000549469.1_1_2:176973927-176983694:+|nuORF ENST00000549469.1_1_2:176973927-176983694:+|nuORF MSMS UPN48_class_I_Rep_1 5 450.2748718261719 3 450.276349 1347.80722 NaN NaN NaN NaN NaN NaN NaN 84.685 1 88.283 87.783 88.783 3.5973 0 0 0 0.53105 1 20272 20272 0.69767 0.19171 1 38411 7392 24310 24321 43588 43588 0.14722515022367588 RRPRAVCC 8 Unmodified _RRPRAVCC_ 0 0 0 REV__L1PBa1_dup418|chr15:35357428-35359770:-|1.1296079042649496|0.0195780691613167|5.85|150.0|9|1|sense REV__L1PBa1_dup418|chr15:35357428-35359770:-|1.1296079042649496|0.0195780691613167|5.85|150.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 480.7531433105469 2 480.752556 959.490558 NaN NaN NaN NaN NaN NaN NaN 25.707 1 29.469 28.969 29.969 3.7624 0 0 0 0.40738 1 3569 3569 0.79363 0 1 + 38412 30677 24311 24322 43589 43589 0.009192625390255671 RRPRRQYCI 9 Unmodified _RRPRRQYCI_ 0 0 0 REV__ENST00000401473.7_1_6:34204671-34208558:+|nuORF REV__ENST00000401473.7_1_6:34204671-34208558:+|nuORF MSMS UPN46_class_I_Rep_3 1 416.6033630371094 3 416.568252 1246.68293 NaN NaN NaN NaN NaN NaN NaN 88.304 1 88.304 87.804 88.804 0 0 0 0 0.40177 1 21200 21200 0.26902 0.033176 1 + 38413 22160 24312 24323 43590 43590 0.06945301210726029 RRPRWAHH 8 Unmodified _RRPRWAHH_ 0 0 0 AluSx_dup16075|chr2:177259028-177259311:+|1.3344387139311995|0.0718657237138605|4.21|151.0|6|2|sense AluSx_dup16075|chr2:177259028-177259311:+|1.3344387139311995|0.0718657237138605|4.21|151.0|6|2|sense AluSx_dup16075|chr2:177259028-177259311:+|1.3344387139311995|0.0718657237138605|4.21|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 558.3072509765625 2 558.307733 1114.60091 NaN NaN NaN NaN NaN NaN NaN 78.377 1 81.899 81.399 82.399 3.5221 0 0 0 0.40738 1 18691 18691 0.79363 0.19213 1 38414 273 24313 24324 43591 43591 0.04819566913943163 RRPVIPATRE 10 Unmodified _RRPVIPATRE_ 0 0 0 AluSp_dup21612|chr8:27335311-27335625:+|2.116776128184221|0.0137248562862914|7.27|151.0|12|3|sense AluSp_dup21612|chr8:27335311-27335625:+|2.116776128184221|0.0137248562862914|7.27|151.0|12|3|sense AluSp_dup21612|chr8:27335311-27335625:+|2.116776128184221|0.0137248562862914|7.27|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8563232421875 2 597.856921 1193.69929 0.48401 0.00028937 -0.82239 -0.00049167 -0.33839 -0.00020231 597.8561097840293 86.378 0.15765 90.095 90.002 90.159 3.7171 31 21 2 0 0 0 0.56354 1 20563 20563 1.3295 0 1 69692 38415 230 24314 24325 43592 43592 0.11018705648439209 RRQAHSLLL 9 Unmodified _RRQAHSLLL_ 0 0 0 REV__L1MA9_dup1900|chr2:168655006-168655989:+|1.4600840378634623|0.0117593018534719|6.96|151.0|11|1|sense REV__L1MA9_dup1900|chr2:168655006-168655989:+|1.4600840378634623|0.0117593018534719|6.96|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 547.3325805664062 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 89.099 1 92.772 92.272 93.272 3.6738 0 0 0 0.39598 1 22276 22276 1.6526 0.17072 1 + 38416 25627 24315 24326 43593 43593 0.10899051448291175 RRQAVRNRVP 10 Unmodified _RRQAVRNRVP_ 0 0 0 REV__MER1A_dup3064|chr19:48216744-48217273:-|3.2183197321846357|0.2290476993775762|3.81|151.0|1|1|sense REV__MER1A_dup3064|chr19:48216744-48217273:-|3.2183197321846357|0.2290476993775762|3.81|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 626.37939453125 2 626.378886 1250.74322 NaN NaN NaN NaN NaN NaN NaN 107.39 1 111.02 110.52 111.52 3.6299 0 0 0 0.53105 1 25888 25888 22.736 8.3309 1 + 38417 31126 24316 24327 43594 43594 0.1278773486544651 RRQDSRIY 8 Unmodified _RRQDSRIY_ 0 0 0 ENST00000423241.6_1_2:201983266-201994474:+|nuORF ENST00000423241.6_1_2:201983266-201994474:+|nuORF ENST00000423241.6_1_2:201983266-201994474:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.298583984375 2 547.296696 1092.57884 NaN NaN NaN NaN NaN NaN NaN 31.718 1 35.447 34.947 35.947 3.7293 0 0 0 0.40659 1 5361 5361 1.8442 0 1 38418 6691 24317 24328 43595 43595 0.03625297654866699 RRQEITTAE 9 Unmodified _RRQEITTAE_ 0 0 0 L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|35|1|sense L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|35|1|sense L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|35|1|sense MSMS UPN46_class_I_Rep_3 1 552.2933349609375 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 99.849 1 99.849 99.349 100.35 0 0 0 0 0.39428 1 24335 24335 2.0598 0 1 38419 14799 24318 24329 43596 43596 0.025901543525151283 RRQEITTAE 9 Unmodified _RRQEITTAE_ 0 0 0 L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|35|1|sense L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|35|1|sense L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|35|1|sense MSMS UPN48_class_I_Rep_3 7 552.2932739257812 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 90.027 1 93.874 93.374 94.374 3.847 0 0 0 0.39428 1 21377 21377 2.0598 0 1 38420 14799 24318 24329 43597 43597 0.025901543525151283 RRQEPAHVI 9 Unmodified _RRQEPAHVI_ 0 0 0 REV__ENST00000599429.5_1_19:17448434-17449065:+|nuORF REV__ENST00000599429.5_1_19:17448434-17449065:+|nuORF MSMS UPN46_class_I_Rep_3 1 553.3179321289062 2 553.314889 1104.61522 NaN NaN NaN NaN NaN NaN NaN 45.955 1 45.955 45.455 46.455 0 0 0 0 0.39428 1 9384 9384 2.0598 0 1 + 38421 21757 24319 24330 43598 43598 0.06710174551562886 RRQGGQWAW 9 Unmodified _RRQGGQWAW_ 0 0 0 ENST00000339865.9_2_11:11863015-11863387:+|nuORF ENST00000339865.9_2_11:11863015-11863387:+|nuORF ENST00000339865.9_2_11:11863015-11863387:+|nuORF MSMS UPN46_class_I_Rep_3 1 572.790771484375 2 572.791581 1143.56861 NaN NaN NaN NaN NaN NaN NaN 70.926 1 70.926 70.426 71.426 0 0 0 0 0.39518 1 16321 16321 1.8442 0 1 38422 6227 24320 24331 43599 43599 0.002567347202784731 RRQGPPHI 8 Unmodified _RRQGPPHI_ 0 0 0 ENSG00000085872|ENST00000546361|CHERP ENSG00000085872|ENST00000546361|CHERP ENSG00000085872|ENST00000546361|CHERP MULTI-MSMS UPN47_class_I_Rep_3 4 480.7766418457031 2 480.777942 959.541332 -0.66276 -0.00031864 -1.1728 -0.00056388 -1.8356 -0.00088252 480.77738151023016 21.727 0.50122 25.076 24.842 25.343 3.3496 81 48 2 0 0 0 0.82752 1 2486 2486 2.5775 0 1 63502 38423 1271 24321 24332 43600 43600 0.05994251179902221 RRQGRIFP 8 Unmodified _RRQGRIFP_ 0 0 0 nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8|CD84 nc|ENSG00000066294|Q9UIB8-4|CD84 nc|ENSG00000066294|Q9UIB8-4|CD84 MULTI-MSMS UPN48_class_I_Rep_1 5 515.306640625 2 515.306867 1028.59918 0.25635 0.0001321 -1.0538 -0.00054302 -0.79743 -0.00041092 515.3062980484322 87.585 0.63313 91.204 90.858 91.491 3.6187 102 69 2 0 0 0 0.82752 1 21037 21037 2.3027 0.24298 1 110030 38424 6312 24322 24333 43601 43601 0.08602513105302023 RRQHYRQR 8 Unmodified _RRQHYRQR_ 0 0 0 NFRKB|p.L990Ifs*32|1|0.34|ENSG00000170322|chr11:129870057-129870058|-/T|frameshift_variant NFRKB|p.L990Ifs*32|1|0.34|ENSG00000170322|chr11:129870057-129870058|-/T|frameshift_variant NFRKB|p.L990Ifs*32|1|0.34|ENSG00000170322|chr11:129870057-129870058|-/T|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 600.3328247070312 2 600.334479 1198.6544 -0.02078 -1.2475E-05 -1.0147 -0.00060915 -1.0355 -0.00062162 600.3338012712095 13.216 0.16939 13.216 13.163 13.333 0 24 17 2 0 0 0 0.82752 1 333 333 2.3027 0.9732 1 28821 38425 16870 24323 24334 43602 43602 0.06302319625774544 RRQIDPLIQI 10 Unmodified _RRQIDPLIQI_ 0 0 0 REV__L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|16|1|sense REV__L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.3798217773438 2 626.380229 1250.7459 0.60023 0.00037598 -0.9176 -0.00057477 -0.31737 -0.00019879 626.3797540129832 98.409 0.81717 102.31 102.18 103 3.9022 179 116 3 0 0 0 0.56337 2 23392 23392;23438 2.9952 1.6657 1 2643600 + 38426 30307 24324 24335 43603;43604 43603 0.13056145479754377 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 634.8932495117188 2 634.892161 1267.76977 0.72699 0.00046156 1.2526 0.00079529 1.9796 0.0012568 634.8926229501322 102.31 0.13344 102.31 102.22 102.36 0 24 16 2 0 0 0 0.56333 1 24948 24948 1.4819 0.15237 1 335380 + 38427 21638 24325 24336 43605 43605 0.14659423756802425 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 634.8927001953125 2 634.892161 1267.76977 0.43241 0.00027453 0.63032 0.00040019 1.0627 0.00067472 634.8924526175957 98.54 0.77919 102.15 101.54 102.31 3.6065 258 101 3 0 0 0 0.54466 3 23648 23648;23683;23722 6.2058 2.2614 1 2008700 + 38428 21638 24325 24336 43606;43607;43608 43606 0.14659423756802425 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 634.8934936523438 2 634.892161 1267.76977 0.62081 0.00039415 0.50843 0.0003228 1.1292 0.00071695 634.8925448048915 98.168 0.51871 102.07 101.74 102.26 3.9022 106 64 3 0 0 0 0.84575 1 23219 23219 3.5965 0 1 2624000 + 38429 21638 24325 24336 43609 43609 0.14659423756802425 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 634.892161 1267.76977 0.72699 0.00046156 1.2526 0.00079529 1.9796 0.0012568 634.8926229501322 102.31 0.13344 102.31 102.22 102.36 0 0.15224 0.00087137 NaN 6.2058 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 335380 + 38430 21638 24325 24336 0.14659423756802425 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 634.892161 1267.76977 0.56772 0.00036044 0.67782 0.00043034 1.2455 0.00079079 634.8924604827054 98.548 0.34542 102.34 102.03 102.37 3.7926 0.18527 0.00014148 NaN 6.2058 118 46 3 NaN NaN NaN NaN 0 NaN NaN 0 369520 + 38431 21638 24325 24336 0.14659423756802425 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 634.892161 1267.76977 0.63446 0.00040281 0.14499 9.2054E-05 0.77945 0.00049487 634.8922094886958 98.568 0.2667 102.06 101.96 102.23 3.4897 -0.097058 -0.0005351 NaN 6.2058 67 38 2 NaN NaN NaN NaN 0 NaN NaN 0 446980 + 38432 21638 24325 24336 0.14659423756802425 RRQIRGRKAQ 10 Unmodified _RRQIRGRKAQ_ 0 0 0 REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF REV__ENST00000290552.7_1_16:55358403-55358643:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 634.892161 1267.76977 0.49755 0.00031589 0.55531 0.00035256 1.0529 0.00066846 634.8924391584942 98.236 0.70912 102.01 101.81 102.52 3.7707 -0.14797 -1.4082E-05 NaN 6.2058 173 100 3 NaN NaN NaN NaN 0 NaN NaN 0 2274900 + 38433 21638 24325 24336 0.14659423756802425 RRQKGPAPAL 10 Unmodified _RRQKGPAPAL_ 0 0 0 REV__HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense REV__HERVH-int_dup1687|chr4:94295576-94298463:-|1.0974549106077247|0.1547563139906876|2.83|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3330078125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 89.157 1 92.831 92.331 93.331 3.6738 0 0 0 0.53105 1 22288 22288 1.6526 0.85899 1 + 38434 23654 24326 24337 43610 43610 0.10899051448268438 RRQKIQKY 8 Unmodified _RRQKIQKY_ 0 0 0 L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|32|3|sense L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|32|3|sense L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.3413696289062 2 560.340907 1118.66726 0.5111 0.00028639 -1.1221 -0.00062873 -0.61096 -0.00034235 560.3403384781427 94.902 0.19331 98.653 98.599 98.792 3.7508 38 26 3 0 0 0 0.82752 1 23570 23570 0.69038 0 1 94543 38435 8944 24327 24338 43611 43611 0.11267337965318802 RRQKIQKY 8 Unmodified _RRQKIQKY_ 0 0 0 L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|32|3|sense L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|32|3|sense L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3401489257812 2 560.340907 1118.66726 0.6348 0.0003557 -1.2396 -0.00069459 -0.60479 -0.00033889 560.3402189298998 94.435 0.23003 97.907 97.799 98.029 3.472 41 32 2 0 0 0 0.82752 2 23261 23261;23291 0.69038 0 1 115490 38436 8944 24327 24338 43612;43613 43612 0.11267337965318802 RRQKKSYK 8 Unmodified _RRQKKSYK_ 0 0 0 REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN47_class_I_Rep_2 3 547.3323974609375 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 84.248 1 87.671 87.171 88.171 3.4232 0 0 0 0.40746 1 21012 21012 0.69038 0 1 + 38437 24864 24328 24339 43614 43614 0.10899051448268438 RRQKKSYK 8 Unmodified _RRQKKSYK_ 0 0 0 REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|66|2|sense MSMS UPN47_class_I_Rep_3 4 547.333251953125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 95.075 1 98.484 97.984 98.984 3.4095 0 0 0 0.40746 1 23642 23642 0.69038 0 1 + 38438 24864 24328 24339 43615 43615 0.10899051448268438 RRQKLPRK 8 Unmodified _RRQKLPRK_ 0 0 0 nc|ENSG00000184939|Q8TF47-3|ZFP90 nc|ENSG00000184939|Q8TF47-3|ZFP90 nc|ENSG00000184939|Q8TF47-3|ZFP90 MSMS UPN46_class_I_Rep_3 1 541.3585205078125 2 541.356891 1080.69923 NaN NaN NaN NaN NaN NaN NaN 111.63 1 111.63 111.13 112.13 0 0 0 0 0.40746 1 27533 27533 0.69038 0 1 38439 16775 24329 24340 43616 43616 0.16210750439131516 RRQLGAAE 8 Unmodified _RRQLGAAE_ 0 0 0 ENST00000375114.7_1_20:32581481-32619357:+|nuORF ENST00000375114.7_1_20:32581481-32619357:+|nuORF ENST00000375114.7_1_20:32581481-32619357:+|nuORF MSMS UPN47_class_I_Rep_1 2 450.7646484375 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 72.114 1 75.494 74.994 75.994 3.3799 0 0 0 0.40625 1 17625 17625 2.3027 0 1 38440 6438 24330 24341 43617 43617 0.03994552189033129 RRQLKTGLR 9 Unmodified _RRQLKTGLR_ 0 0 0 L1M4b_dup1063|chr4:88072283-88072755:-|1.0293890575943176|0.3063465744249316|1.75|151.0|19|3|sense L1M4b_dup1063|chr4:88072283-88072755:-|1.0293890575943176|0.3063465744249316|1.75|151.0|19|3|sense L1M4b_dup1063|chr4:88072283-88072755:-|1.0293890575943176|0.3063465744249316|1.75|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 564.3590087890625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 82.793 1 86.191 85.691 86.691 3.3984 0 0 0 0.4007 1 20639 20639 0.52476 0 1 38441 8991 24331 24342 43618 43618 0.14642429230934795 RRQLKTGLR 9 Unmodified _RRQLKTGLR_ 0 0 0 L1M4b_dup1063|chr4:88072283-88072755:-|1.0293890575943176|0.3063465744249316|1.75|151.0|19|3|sense L1M4b_dup1063|chr4:88072283-88072755:-|1.0293890575943176|0.3063465744249316|1.75|151.0|19|3|sense L1M4b_dup1063|chr4:88072283-88072755:-|1.0293890575943176|0.3063465744249316|1.75|151.0|19|3|sense MSMS UPN48_class_I_Rep_2 6 564.3580322265625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 86.079 1 89.785 89.285 90.285 3.7058 0 0 0 0.4007 1 20493 20493 0.52476 0 1 38442 8991 24331 24342 43619 43619 0.14642429230934795 RRQLLATL 8 Unmodified _RRQLLATL_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MSMS UPN47_class_I_Rep_3 4 485.8124694824219 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 79.705 1 83 82.5 83.5 3.295 0 0 0 0.40746 1 19936 19936 0.69038 0 1 38443 2741 24332 24343 43620 43620 0.12232861670997863 RRQLQASL 8 Unmodified _RRQLQASL_ 0 0 0 REV__ENST00000368076.1_1_1:160175253-160176995:+|nuORF REV__ENST00000368076.1_1_1:160175253-160176995:+|nuORF MSMS UPN47_class_I_Rep_3 4 486.2914733886719 2 486.290882 970.567212 NaN NaN NaN NaN NaN NaN NaN 78.556 1 81.838 81.338 82.338 3.2816 0 0 0 0.40625 1 19595 19595 2.3027 0 1 + 38444 21937 24333 24344 43621 43621 0.08075100631504029 RRQLRAHERR 10 Unmodified _RRQLRAHERR_ 0 0 0 REV__ENSG00000186710|ENST00000335621|CFAP73 REV__ENSG00000186710|ENST00000335621|CFAP73 MULTI-SECPEP UPN48_class_I_Rep_2 6 459.6653137207031 3 459.939736 1376.79738 0.07803 3.5889E-05 -0.17594 -8.0922E-05 -0.09791 -4.5033E-05 460.27341268203014 47.6 0.35352 51.336 51.255 51.609 3.7361 35 23 2 0 0 0 0.84575 1 9475 9475 0.13989 0 1 131390 + 38445 20902 24334 24345 43622 43622 0.12405327016995216 RRQMRLKT 8 Unmodified _RRQMRLKT_ 0 0 0 REV__L1PA8_dup7673|chr19:21552142-21553208:-|2.1017829051487413|0.2689736118681411|2.97|145.0|1|1|sense REV__L1PA8_dup7673|chr19:21552142-21553208:-|2.1017829051487413|0.2689736118681411|2.97|145.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 544.8248901367188 2 544.827109 1087.63967 0.49829 0.00027148 -1.7941 -0.0009775 -1.2959 -0.00070602 544.8245425880338 89.456 0.61079 93.285 92.889 93.5 3.8293 135 74 3 0 0 0 0.82752 1 21230 21230 2.3027 0 1 144180 + 38446 30253 24335 24346 43623 43623 0.09935111433446764 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 604.8690185546875 2 604.365779 1206.717 0.59912 0.00036209 1.7384 0.0010506 2.3375 0.0014127 604.3666930558528 101.09 0.075623 101.09 101.04 101.12 0 11 6 2 0 0 0 0.54822 1 24656 24656 5.7319 2.7366 1 2762700 38447 6913 24336 24347 43624 43624 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 604.8682861328125 2 604.365779 1206.717 0.59838 0.00036164 1.2735 0.00076969 1.8719 0.0011313 604.3665306549838 101.38 0.21848 101.38 101.27 101.49 0 26 25 2 0 0 0 0.54822 1 24723 24723 5.7319 1.203 1 2008400 38448 6913 24336 24347 43625 43625 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 604.3663330078125 2 604.365779 1206.717 0.63459 0.00038353 1.3183 0.00079671 1.9529 0.0011802 604.3664529334696 97.78 0.16724 101.26 101.18 101.35 3.4836 26 22 2 0 0 0 0.56078 1 23986 23986 3.2813 1.4371 1 97247 38449 6913 24336 24347 43626 43626 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MSMS UPN47_class_I_Rep_3 4 403.2471008300781 3 403.246278 1206.717 NaN NaN NaN NaN NaN NaN NaN 96.854 1 100.27 99.768 100.77 3.414 0 0 0 0.53105 1 24013 24013 1.5923 0.13716 1 38450 6913 24336 24347 43627 43627 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MSMS UPN48_class_I_Rep_1 5 403.2466735839844 3 403.246278 1206.717 NaN NaN NaN NaN NaN NaN NaN 97.196 1 100.8 100.3 101.3 3.6088 0 0 0 0.53105 1 23443 23443 1.5923 0.63001 1 38451 6913 24336 24347 43628 43628 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 403.2466125488281 3 403.246278 1206.717 0.096565 3.8939E-05 1.0924 0.00044049 1.1889 0.00047943 403.2466135636111 97.345 0.13509 101.25 101.18 101.31 3.9084 20 17 2 0 0 0 0.56333 1 23078 23078 0.62683 0.12087 1 176460 38452 6913 24336 24347 43629 43629 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 604.366455078125 2 604.365779 1206.717 0.54632 0.00033018 1.2028 0.00072693 1.7491 0.0010571 604.3664157706083 97.496 0.16681 101.4 101.37 101.54 3.9022 50 23 3 0 0 0 0.56333 1 23125 23125 1.4819 0.15237 1 306940 38453 6913 24336 24347 43630 43630 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 403.246278 1206.717 0.063973 2.5797E-05 1.261 0.00050848 1.3249 0.00053428 403.24667465498067 101.09 0.14458 101.09 101.03 101.18 0 -0.0081637 -0.00026393 NaN 0.62683 18 13 3 NaN NaN NaN NaN 0 NaN NaN 0 540570 38454 6913 24336 24347 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 403.246278 1206.717 -0.61146 -0.00024657 2.4397 0.00098381 1.8283 0.00073724 403.58164411050416 97.431 0.05574 100.85 100.83 100.89 3.4216 -0.24799 0.0011621 NaN 0.62683 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 43197 38455 6913 24336 24347 0.12191465693967984 RRQPGKPRRG 10 Unmodified _RRQPGKPRRG_ 0 0 0 ENST00000473958.1_1_3:128208233-128208692:+|nuORF;ENST00000468377.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 403.246278 1206.717 0.082151 3.3127E-05 0.62479 0.00025194 0.70694 0.00028507 403.2465543449405 97.425 0.020973 101.2 101.19 101.21 3.779 0.10342 -0.0010335 NaN 0.62683 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 18090 38456 6913 24336 24347 0.12191465693967984 RRQPPTLLQ 9 Unmodified _RRQPPTLLQ_ 0 0 0 REV__ENST00000561210.1_1_15:54556427-54709226:+|nuORF REV__ENST00000561210.1_1_15:54556427-54709226:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 554.3297119140625 2 554.832914 1107.65128 0.39568 0.00021954 -0.88794 -0.00049266 -0.49226 -0.00027312 554.8313682669443 110.95 0.048546 114.62 114.6 114.65 3.6654 9 5 2 0 0 0 0.12462 1 26325 26325 1.8442 0.19162 1 121740 + 38457 23026 24337 24348 43631 43631 0.10175631728429835 RRQPVKVWY 9 Unmodified _RRQPVKVWY_ 0 0 0 REV__HERVK22-int_dup35|chr2:26257420-26257737:-|1.341979841015648|0.2569369721043205|2.38|151.0|9|3|sense REV__HERVK22-int_dup35|chr2:26257420-26257737:-|1.341979841015648|0.2569369721043205|2.38|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 616.35693359375 2 616.356557 1230.69856 NaN NaN NaN NaN NaN NaN NaN 31.649 1 35.35 34.85 35.85 3.7015 0 0 0 0.40038 1 4712 4712 0.6015 0.076735 1 + 38458 23813 24338 24349 43632 43632 0.09243910999430227 RRQQRLKRE 9 Unmodified _RRQQRLKRE_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS UPN48_class_I_Rep_1 5 635.3858642578125 2 635.384168 1268.75378 NaN NaN NaN NaN NaN NaN NaN 95.201 1 98.818 98.318 99.318 3.6167 0 0 0 0.39598 1 22922 22922 1.6526 0.17072 1 38459 3838 24339 24350 43633 43633 0.13015717519920145 RRQRAVPEI 9 Unmodified _RRQRAVPEI_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-SECPEP UPN46_class_I_Rep_3 1 562.334716796875 2 562.835988 1123.65742 0.17041 9.5916E-05 0.60575 0.00034094 0.77617 0.00043685 562.8362553586516 29.322 0.10253 29.322 29.281 29.384 0 10 6 2 0 0 0 0.12462 1 4631 4631 1.8442 0.19162 1 476040 38460 2603 24340 24351 43634 43634 0.10054149959933056 RRQRAVPEI 9 Unmodified _RRQRAVPEI_ 0 0 0 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 MULTI-MSMS UPN47_class_I_Rep_1 2 562.8364868164062 2 562.835988 1123.65742 0.50502 0.00028425 1.3599 0.00076539 1.8649 0.0010496 562.8363553338088 109.35 0.78122 112.95 112.9 113.68 3.6046 136 103 2 0 0 0 0.46434 1 26977 26977 4.3292 1.594 1 2346000 38461 2603 24340 24351 43635 43635 0.10054149959933056 RRQRHSCY 8 Unmodified _RRQRHSCY_ 0 0 0 REV__ENST00000246015.8_2_20:1099282-1099507:+|nuORF REV__ENST00000246015.8_2_20:1099282-1099507:+|nuORF MSMS UPN48_class_I_Rep_3 7 553.2755126953125 2 553.275241 1104.53593 NaN NaN NaN NaN NaN NaN NaN 29.202 1 32.931 32.431 33.431 3.7286 0 0 0 0.40746 1 4068 4068 0.69038 0 1 + 38462 21517 24341 24352 43636 43636 -0.012157956742385068 RRQRLGFV 8 Unmodified _RRQRLGFV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS UPN46_class_I_Rep_3 1 516.3145751953125 2 516.314692 1030.61483 0.32394 0.00016726 -0.95474 -0.00049295 -0.63079 -0.00032569 516.3143602222643 93.934 0.54478 93.934 93.422 93.966 0 154 53 5 0 0 0 0.82752 2 22650 22650;22685 4.756 0 1 31045000 38463 1426 24342 24353 43637;43638 43637 0.10074799622361752 RRQRLGFV 8 Unmodified _RRQRLGFV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS UPN46_class_I_Rep_3 1 516.3140869140625 2 516.314692 1030.61483 0.32399 0.00016728 -1.3812 -0.00071314 -1.0572 -0.00054585 516.3139368662759 94.79 0.12714 94.79 94.721 94.848 0 26 13 3 0 0 0 0.82752 1 23005 23005 4.756 0 1 216480 38464 1426 24342 24353 43639 43639 0.10074799622361752 RRQRLGFV 8 Unmodified _RRQRLGFV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MSMS UPN48_class_I_Rep_1 5 516.6470947265625 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 102.9 1 106.52 106.02 107.02 3.6164 0 0 0 0.4044 1 24804 24804 4.756 0 1 38465 1426 24342 24353 43640 43640 0.10074799622361752 RRQRLGFV 8 Unmodified _RRQRLGFV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS UPN48_class_I_Rep_3 7 516.313720703125 2 516.314692 1030.61483 0.35816 0.00018492 -1.5742 -0.00081278 -1.216 -0.00062785 516.3136770951364 90.918 0.10056 94.765 94.693 94.794 3.847 21 13 2 0 0 0 0.82752 1 21566 21566 2.3027 0 1 254280 38466 1426 24342 24353 43641 43641 0.10074799622361752 RRQRPKWKP 9 Unmodified _RRQRPKWKP_ 0 0 0 REV__LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|70|3|anti-sense REV__LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_2 3 626.3798217773438 2 626.380897 1250.74724 NaN NaN NaN NaN NaN NaN NaN 99.037 1 102.53 102.03 103.03 3.4897 0 0 0 0.4007 1 24264 24264 0.52476 0.066424 1 + 38467 30822 24343 24354 43642 43642 0.1318982435916496 RRQRPKWKP 9 Unmodified _RRQRPKWKP_ 0 0 0 REV__LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|70|3|anti-sense REV__LTR12C_dup943|chr5:103141165-103142601:-|1.4413419365140852|0.077301852263612|4.22|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_2 3 626.3792114257812 2 626.380897 1250.74724 NaN NaN NaN NaN NaN NaN NaN 99.163 1 102.65 102.15 103.15 3.4897 0 0 0 0.4007 1 24289 24289 0.52476 0.066424 1 + 38468 30822 24343 24354 43643 43643 0.1318982435916496 RRQRPVSL 8 Unmodified _RRQRPVSL_ 0 0 0 REV__ENSG00000171316|ENST00000423902|CHD7 REV__ENSG00000171316|ENST00000423902|CHD7 MSMS UPN46_class_I_Rep_3 1 506.3099365234375 2 506.312149 1010.60975 NaN NaN NaN NaN NaN NaN NaN 107.44 1 107.44 106.94 107.94 0 0 0 0 0.39996 1 26203 26203 7.9102 0 1 + 38469 20402 24344 24355 43644 43644 0.1048649575974423 RRQRRRRGTLA 11 Unmodified _RRQRRRRGTLA_ 0 0 0 REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 475.9613037109375 3 475.962653 1424.86613 0.20542 9.7774E-05 -2.9839 -0.0014202 -2.7785 -0.0013224 475.961208378171 68.962 0.060753 68.962 68.951 69.011 0 7 3 3 0 0 0 0.67356 1 15778 15778 1.1098 0.41209 1 1973200 + 38470 21566 24345 24356 43645 43645 0.17068991316727988 RRQRTLYI 8 Unmodified _RRQRTLYI_ 0 0 0 L1MB4_dup6355|chr12:96273825-96274711:+|1.297017167083402|0.0513327160788691|4.66|150.0|7|1|sense L1MB4_dup6355|chr12:96273825-96274711:+|1.297017167083402|0.0513327160788691|4.66|150.0|7|1|sense L1MB4_dup6355|chr12:96273825-96274711:+|1.297017167083402|0.0513327160788691|4.66|150.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.3323974609375 2 553.333082 1104.65161 0.48602 0.00026893 -0.88553 -0.00048999 -0.3995 -0.00022106 553.3325076648899 88.076 0.48406 91.463 91.264 91.748 3.3873 72 53 2 0 0 0 0.82752 1 22104 22104 0.69038 0 1 126530 38471 10545 24346 24357 43646 43646 0.10347051448275124 RRQSRRRKKR 10 Unmodified _RRQSRRRKKR_ 0 0 0 REV__nc|ENSG00000186854|Q86V40-2|TRABD2A REV__nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN46_class_I_Rep_3 1 476.3066711425781 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 118.48 1 118.48 117.98 118.98 0 0 0 0 0.53105 1 29412 29412 0.15932 0.01943 1 + 38472 20907 24347 24358 43647 43647 0.20184984070669998 RRQSRRRKKR 10 Unmodified _RRQSRRRKKR_ 0 0 0 REV__nc|ENSG00000186854|Q86V40-2|TRABD2A REV__nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN47_class_I_Rep_3 4 476.306640625 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 64.819 1 67.998 67.498 68.498 3.1795 0 0 0 0.53105 1 15527 15527 0.15932 0.01943 1 + 38473 20907 24347 24358 43648 43648 0.20184984070669998 RRQSRRRKKR 10 Unmodified _RRQSRRRKKR_ 0 0 0 REV__nc|ENSG00000186854|Q86V40-2|TRABD2A REV__nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS UPN47_class_I_Rep_3 4 476.3065490722656 3 476.306531 1425.89776 NaN NaN NaN NaN NaN NaN NaN 88.876 1 92.269 91.769 92.769 3.3931 0 0 0 0.53105 1 22290 22290 0.15932 0.01943 1 + 38474 20907 24347 24358 43649 43649 0.20184984070669998 RRQTALLL 8 Unmodified _RRQTALLL_ 0 0 0 Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 67.772 1 71.133 70.633 71.633 3.3611 0 0 0 0.40604 1 16318 16318 2.5775 0 1 38475 32999 24348 24359 43650 43650 0.12232861670997863 RRQTALLL 8 Unmodified _RRQTALLL_ 0 0 0 Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 485.81231689453125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.116 1 71.385 70.885 71.885 3.2696 0 0 0 0.40604 1 16466 16466 2.5775 0 1 38476 32999 24348 24359 43651 43651 0.12232861670997863 RRQTALLL 8 Unmodified _RRQTALLL_ 0 0 0 Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense Tigger1_dup10806|chr17:30133768-30134468:-|1.4719675489142066|0.0569912386156234|4.69|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 485.811767578125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 67.924 1 71.121 70.621 71.621 3.1977 0 0 0 0.40604 1 16473 16473 2.5775 0 1 38477 32999 24348 24359 43652 43652 0.12232861670997863 RRQTEVTVP 9 Unmodified _RRQTEVTVP_ 0 0 0 REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 543.3075561523438 2 543.306729 1084.59891 0.40665 0.00022093 1.2543 0.00068146 1.6609 0.0009024 543.3074554218159 107.84 0.11505 111.47 111.44 111.56 3.6313 11 7 2 0 0 0 0.40174 1 26027 26027 7.9102 0.80843 1 2601500 + 38478 21889 24349 24360 43653 43653 0.05999048594821943 RRQTEVTVP 9 Unmodified _RRQTEVTVP_ 0 0 0 REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 543.306729 1084.59891 0.40665 0.00022093 1.2543 0.00068146 1.6609 0.0009024 543.3074554218159 107.84 0.11505 111.47 111.44 111.56 3.6313 -0.018991 -0.0001421 NaN 7.9102 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2601500 + 38479 21889 24349 24360 0.05999048594821943 RRQTEVTVP 9 Unmodified _RRQTEVTVP_ 0 0 0 REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 543.306729 1084.59891 0.483 0.00026242 1.3923 0.00075643 1.8753 0.0010188 543.3075858994549 107.81 0.064857 111.49 111.47 111.54 3.6783 -0.0047712 7.829E-06 NaN 7.9102 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3946800 + 38480 21889 24349 24360 0.05999048594821943 RRQTEVTVP 9 Unmodified _RRQTEVTVP_ 0 0 0 REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF REV__ENST00000359172.3_1_1:110546760-110546847:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 543.306729 1084.59891 0.50658 0.00027523 1.7025 0.00092495 2.209 0.0012002 543.3077231416131 107.83 0.083084 111.52 111.47 111.56 3.6813 0.023762 0.00034488 NaN 7.9102 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1814600 + 38481 21889 24349 24360 0.05999048594821943 RRQVISALPT 10 Unmodified _RRQVISALPT_ 0 0 0 L1PA6_dup4693|chr12:46246033-46248874:+|2.3490020851891598|0.155750175151096|3.91|151.0|34|2|sense L1PA6_dup4693|chr12:46246033-46248874:+|2.3490020851891598|0.155750175151096|3.91|151.0|34|2|sense L1PA6_dup4693|chr12:46246033-46248874:+|2.3490020851891598|0.155750175151096|3.91|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 570.848388671875 2 570.846022 1139.67749 NaN NaN NaN NaN NaN NaN NaN 108.92 1 108.92 108.42 109.42 0 0 0 0 0.53105 1 26683 26683 15.248 3.6082 1 38482 14642 24350 24361 43654 43654 0.11323900899878936 RRQVLRSARQ 10 Unmodified _RRQVLRSARQ_ 0 0 0 REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 MSMS UPN48_class_I_Rep_2 6 635.3709716796875 2 635.384168 1268.75378 NaN NaN NaN NaN NaN NaN NaN 95.198 1 98.979 98.479 99.479 3.7804 0 0 0 0.53105 1 22630 22630 3.2813 0.28607 1 + 38483 19857 24351 24362 43655 43655 0.13015717519897407 RRQWPPGP 8 Unmodified _RRQWPPGP_ 0 0 0 ENST00000458198.2_1_5:133745684-133747438:-|nuORF ENST00000458198.2_1_5:133745684-133747438:-|nuORF ENST00000458198.2_1_5:133745684-133747438:-|nuORF MSMS UPN48_class_I_Rep_2 6 497.21771240234375 2 497.272493 992.530432 NaN NaN NaN NaN NaN NaN NaN 32.315 1 35.965 35.465 36.465 3.6497 0 0 0 0.40746 1 4978 4978 0.69038 0 1 38484 6843 24352 24363 43656 43656 0.03386848805610043 RRQWRRRR 8 Unmodified _RRQWRRRR_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS UPN46_class_I_Rep_3 1 635.3840942382812 2 635.384837 1268.75512 NaN NaN NaN NaN NaN NaN NaN 75.189 1 75.189 74.689 75.689 0 0 0 0 0.40746 1 17467 17467 0.69038 0 1 38485 6052 24353 24364 43657 43657 0.1314939639930799 RRQWRRRR 8 Unmodified _RRQWRRRR_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS UPN46_class_I_Rep_3 1 635.384765625 2 635.384837 1268.75512 NaN NaN NaN NaN NaN NaN NaN 87.34 1 87.34 86.84 87.84 0 0 0 0 0.40746 1 20922 20922 0.69038 0 1 38486 6052 24353 24364 43658 43658 0.1314939639930799 RRQWRRRR 8 Unmodified _RRQWRRRR_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS UPN47_class_I_Rep_3 4 635.3853759765625 2 635.384837 1268.75512 NaN NaN NaN NaN NaN NaN NaN 102.98 1 106.49 105.99 106.99 3.5057 0 0 0 0.40746 1 25291 25291 0.69038 0 1 38487 6052 24353 24364 43659 43659 0.1314939639930799 RRQWRRRR 8 Unmodified _RRQWRRRR_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS UPN48_class_I_Rep_3 7 635.38525390625 2 635.384837 1268.75512 NaN NaN NaN NaN NaN NaN NaN 110.42 1 114.09 113.59 114.59 3.67 0 0 0 0.40746 1 26204 26204 0.69038 0 1 38488 6052 24353 24364 43660 43660 0.1314939639930799 RRQYNKLK 8 Unmodified _RRQYNKLK_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|1|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|5|intron;VPS13D|p.Q3021Pfs*39|1|0.05|ENSG00000048707|chr1:12346640-12346641|-/C|frameshift_variant nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS UPN47_class_I_Rep_1 2 553.3311767578125 2 553.333082 1104.65161 NaN NaN NaN NaN NaN NaN NaN 87.824 1 91.462 90.962 91.962 3.6372 0 0 0 0.40746 1 21954 21954 0.69038 0 1 38489 897 24354 24365 43661 43661 0.10347051448275124 RRRAAALPN 9 Unmodified _RRRAAALPN_ 0 0 0 ENST00000345392.2_1_3:10183791-10191525:+|nuORF ENST00000345392.2_1_3:10183791-10191525:+|nuORF ENST00000345392.2_1_3:10183791-10191525:+|nuORF MSMS UPN46_class_I_Rep_3 1 512.80859375 2 512.809774 1023.60499 NaN NaN NaN NaN NaN NaN NaN 14.212 1 14.212 13.712 14.712 0 0 0 0 0.4029 1 576 576 0 0 1 38490 6259 24355 24366 43662 43662 0.0941361161696932 RRRARSRR 8 Unmodified _RRRARSRR_ 0 0 0 ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK MSMS UPN48_class_I_Rep_2 6 557.35009765625 2 557.350463 1112.68637 NaN NaN NaN NaN NaN NaN NaN 83.14 1 86.822 86.322 87.322 3.6814 0 0 0 0.40746 1 19752 19752 0.69038 0 1 38491 2886 24356 24367 43663 43663 0.13453732099605986 RRRARSRRAP 10 Unmodified _RRRARSRRAP_ 0 0 0 ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK MULTI-SECPEP UPN46_class_I_Rep_3 1 427.26416015625 3 427.932693 1280.77625 0.042 1.7973E-05 0.76458 0.00032719 0.80658 0.00034516 427.9330583423897 58.257 0.50244 58.257 58.211 58.714 0 73 59 2 0 0 0 0.84575 1 12837 12837 1.5923 1.5923 1 352540 38492 2886 24357 24368 43664 43664 0.14709361708173674 RRRARSRRAP 10 Unmodified _RRRARSRRAP_ 0 0 0 ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK MULTI-SECPEP UPN47_class_I_Rep_1 2 427.2642822265625 3 427.932693 1280.77625 -0.069062 -2.9554E-05 0.70589 0.00030207 0.63683 0.00027252 427.933004465162 53.003 0.50116 56.561 56.322 56.823 3.5585 47 29 2 0 0 0 0.84575 1 11840 11840 0.56317 0.56317 1 354020 38493 2886 24357 24368 43665 43665 0.14709361708173674 RRRARSRRAP 10 Unmodified _RRRARSRRAP_ 0 0 0 ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK MULTI-MATCH UPN47_class_I_Rep_1 2 3 427.932693 1280.77625 -0.041475 -1.7748E-05 0.92491 0.0003958 0.88344 0.00037805 427.93305724235705 54.678 1.0343 58.179 57.769 58.803 3.5014 -0.07581 6.4603E-05 NaN 1.5923 86 60 2 NaN NaN NaN NaN 0 NaN NaN 0 206020 38494 2886 24357 24368 0.14709361708173674 RRRARSRRAP 10 Unmodified _RRRARSRRAP_ 0 0 0 ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK MULTI-MATCH UPN47_class_I_Rep_2 3 3 427.932693 1280.77625 -0.39741 -0.00017007 0.96501 0.00041296 0.5676 0.00024289 427.93312448787674 52.85 1.0164 56.177 56.044 57.061 3.3266 -0.19225 9.7181E-05 NaN 0.56317 88 64 2 NaN NaN NaN NaN 0 NaN NaN 0 411370 38495 2886 24357 24368 0.14709361708173674 RRRARSRRAP 10 Unmodified _RRRARSRRAP_ 0 0 0 ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK ENSG00000135116|ENST00000257572|HRK MULTI-MATCH UPN48_class_I_Rep_3 7 3 427.932693 1280.77625 -0.01118 -4.7844E-06 0.92933 0.00039769 0.91815 0.00039291 427.93301124809653 54.759 0.212 58.329 58.172 58.384 3.5694 0.074001 7.0276E-05 NaN 1.5923 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 149330 38496 2886 24357 24368 0.14709361708173674 RRRATRRR 8 Unmodified _RRRATRRR_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MSMS UPN48_class_I_Rep_2 6 564.3592529296875 2 564.358288 1126.70202 NaN NaN NaN NaN NaN NaN NaN 79.26 1 82.893 82.393 83.393 3.6331 0 0 0 0.40746 1 18823 18823 0.69038 0 1 38497 2939 24358 24369 43666 43666 0.14374018616626927 RRRCPPVS 8 Unmodified _RRRCPPVS_ 0 0 0 REV__ENST00000505081.5_1_5:176940412-176942272:-|nuORF REV__ENST00000505081.5_1_5:176940412-176942272:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.77239990234375 2 485.771803 969.529052 NaN NaN NaN NaN NaN NaN NaN 20.82 1 24.468 23.968 24.968 3.648 0 0 0 0.40746 1 1858 1858 0.69038 0 1 + 38498 22706 24359 24370 43667 43667 0.0430689144519647 RRREFRLGR 9 Unmodified _RRREFRLGR_ 0 0 0 REV__ENST00000382247.5_1_4:17812117-17812297:-|nuORF REV__ENST00000382247.5_1_4:17812117-17812297:-|nuORF MSMS UPN48_class_I_Rep_2 6 623.3731079101562 2 623.373604 1244.73265 NaN NaN NaN NaN NaN NaN NaN 87.348 1 91.076 90.576 91.576 3.7279 0 0 0 0.4007 1 20782 20782 0.52476 0 1 + 38499 22066 24360 24371 43668 43668 0.12007752211002298 RRREYYEKIK 10 Unmodified _RRREYYEKIK_ 0 0 0 ENST00000592056.5_1_19:45543470-45556151:+|nuORF;nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP ENST00000592056.5_1_19:45543470-45556151:+|nuORF ENST00000592056.5_1_19:45543470-45556151:+|nuORF MSMS UPN47_class_I_Rep_3 4 480.7905578613281 3 480.94052 1439.79973 NaN NaN NaN NaN NaN NaN NaN 111.98 1 115.5 115 116 3.5207 0 0 0 0.53105 1 27498 27498 0.15932 0 1 38500 1710 24361 24372 43669 43669 0.09742317911445753 RRRFLLTPH 9 Unmodified _RRRFLLTPH_ 0 0 0 ENST00000607074.1_1_6:170581575-170581749:+|nuORF ENST00000607074.1_1_6:170581575-170581749:+|nuORF ENST00000607074.1_1_6:170581575-170581749:+|nuORF MSMS UPN48_class_I_Rep_2 6 598.3596801757812 2 598.362173 1194.70979 NaN NaN NaN NaN NaN NaN NaN 81.104 1 84.76 84.26 85.26 3.6567 0 0 0 0.39428 1 19247 19247 2.0598 0.21551 1 38501 7690 24362 24373 43670 43670 0.12022733093544957 RRRGALIFKI 10 Unmodified _RRRGALIFKI_ 0 0 0 L1PA5_dup10157|chr16:31278738-31284853:-|1.1068638513188322|0.037794633892038|4.87|150.0|369|3|anti-sense L1PA5_dup10157|chr16:31278738-31284853:-|1.1068638513188322|0.037794633892038|4.87|150.0|369|3|anti-sense L1PA5_dup10157|chr16:31278738-31284853:-|1.1068638513188322|0.037794633892038|4.87|150.0|369|3|anti-sense MSMS UPN47_class_I_Rep_2 3 615.4044189453125 2 615.401299 1228.78804 NaN NaN NaN NaN NaN NaN NaN 71.022 1 74.305 73.805 74.805 3.2828 0 0 0 0.53105 1 17335 17335 0.40072 0 1 38502 14415 24363 24374 43671 43671 0.182801656788115 RRRGKKKK 8 Unmodified _RRRGKKKK_ 0 0 0 REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|6|2|sense REV__MLT2B1_dup3011|chr10:63323833-63324247:-|1.123066825965674|0.0184014761819176|5.93|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 528.8652954101562 2 528.864883 1055.71521 NaN NaN NaN NaN NaN NaN NaN 83.752 1 87.164 86.664 87.664 3.4116 0 0 0 0.40746 1 20884 20884 0.69038 0 1 + 38503 31813 24364 24375 43672 43672 0.1895845667602316 RRRGLVHP 8 Unmodified _RRRGLVHP_ 0 0 0 REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 495.8065185546875 2 495.807034 989.599515 0.30574 0.00015159 -1.1021 -0.00054642 -0.79634 -0.00039483 495.80635588381534 85.425 0.1272 85.425 85.325 85.452 0 14 10 2 0 0 0 0.82752 1 20362 20362 0.79363 0 1 149720 + 38504 21568 24365 24376 43673 43673 0.10429932825172727 RRRGLVHP 8 Unmodified _RRRGLVHP_ 0 0 0 REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF MSMS UPN48_class_I_Rep_1 5 495.8064270019531 2 495.807034 989.599515 NaN NaN NaN NaN NaN NaN NaN 81.995 1 85.57 85.07 86.07 3.5753 0 0 0 0.40738 1 19570 19570 0.79363 0 1 + 38505 21568 24365 24376 43674 43674 0.10429932825172727 RRRGLVHP 8 Unmodified _RRRGLVHP_ 0 0 0 REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF MSMS UPN48_class_I_Rep_3 7 495.80670166015625 2 495.807034 989.599515 NaN NaN NaN NaN NaN NaN NaN 81.96 1 85.645 85.145 86.145 3.685 0 0 0 0.40738 1 19419 19419 0.79363 0 1 + 38506 21568 24365 24376 43675 43675 0.10429932825172727 RRRGRGKG 8 Unmodified _RRRGRGKG_ 0 0 0 ENST00000547697.6_1_12:51844670-51855120:+|nuORF;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8 ENST00000547697.6_1_12:51844670-51855120:+|nuORF ENST00000547697.6_1_12:51844670-51855120:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.79608154296875 2 471.794458 941.574363 NaN NaN NaN NaN NaN NaN NaN 117.72 1 121.32 120.82 121.82 3.6036 0 0 0 0.40798 1 29189 29189 0 0 1 38507 915 24366 24377 43676 43676 0.10123878022625377 RRRGRGKG 8 Unmodified _RRRGRGKG_ 0 0 0 ENST00000547697.6_1_12:51844670-51855120:+|nuORF;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8 ENST00000547697.6_1_12:51844670-51855120:+|nuORF ENST00000547697.6_1_12:51844670-51855120:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.79449462890625 2 471.794458 941.574363 NaN NaN NaN NaN NaN NaN NaN 117.85 1 121.45 120.95 121.95 3.6036 0 0 0 0.40798 1 29226 29226 0 0 1 38508 915 24366 24377 43677 43677 0.10123878022625377 RRRGRGKG 8 Unmodified _RRRGRGKG_ 0 0 0 ENST00000547697.6_1_12:51844670-51855120:+|nuORF;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8 ENST00000547697.6_1_12:51844670-51855120:+|nuORF ENST00000547697.6_1_12:51844670-51855120:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.7954406738281 2 471.794458 941.574363 NaN NaN NaN NaN NaN NaN NaN 119.07 1 122.67 122.17 123.17 3.6036 0 0 0 0.40798 1 29572 29572 0 0 1 38509 915 24366 24377 43678 43678 0.10123878022625377 RRRGRKLVRP 10 Unmodified _RRRGRKLVRP_ 0 0 0 REV__MLT1D_dup9189|chr8:42283282-42283777:+|2.0736760511567587|0.1477775891009086|3.81|151.0|2|1|sense REV__MLT1D_dup9189|chr8:42283282-42283777:+|2.0736760511567587|0.1477775891009086|3.81|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 647.4266357421875 2 647.426171 1292.83779 NaN NaN NaN NaN NaN NaN NaN 17.016 1 20.565 20.065 21.065 3.5486 0 0 0 0.53105 1 910 910 0 0 1 + 38510 31687 24367 24378 43679 43679 0.2030829340742457 RRRGRMALC 9 Unmodified _RRRGRMALC_ 0 0 0 ENSG00000165355|ENST00000298097|FBXO33 ENSG00000165355|ENST00000298097|FBXO33 ENSG00000165355|ENST00000298097|FBXO33 MSMS UPN47_class_I_Rep_1 2 559.7791137695312 2 559.810936 1117.60732 NaN NaN NaN NaN NaN NaN NaN 13.04 1 16.497 15.997 16.997 3.457 0 0 0 0.4029 1 225 225 0 0 1 38511 4176 24368 24379 43680 43680 0.05322000758815193 RRRHREERA 9 Unmodified _RRRHREERA_ 0 0 0 REV__ENSG00000165675|ENST00000394363|ENOX2 REV__ENSG00000165675|ENST00000394363|ENOX2 MSMS UPN48_class_I_Rep_3 7 633.369384765625 2 633.355942 1264.69733 NaN NaN NaN NaN NaN NaN NaN 87.921 1 91.731 91.231 92.231 3.8104 0 0 0 0.38639 1 20864 20864 3.9444 0.3479 1 + 38512 20130 24369 24380 43681 43681 0.07557089683200502 RRRIFYAF 8 Unmodified _RRRIFYAF_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MSMS UPN46_class_I_Rep_3 1 564.8245849609375 2 564.824892 1127.63523 NaN NaN NaN NaN NaN NaN NaN 112.83 1 112.83 112.33 113.33 0 0 0 0 0.40738 1 27862 27862 0.79363 0.19213 1 + 38513 18180 24370 24381 43682 43682 0.0765197028217699 RRRIFYAF 8 Unmodified _RRRIFYAF_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MSMS UPN47_class_I_Rep_2 3 564.7709350585938 2 564.824892 1127.63523 NaN NaN NaN NaN NaN NaN NaN 51.125 1 54.464 53.964 54.964 3.3386 0 0 0 0.40738 1 11298 11298 0.79363 0.10326 1 + 38514 18180 24370 24381 43683 43683 0.0765197028217699 RRRIKLMLK 9 Unmodified _RRRIKLMLK_ 0 0 0 REV__ENST00000256442.9_1_5:68462964-68463831:+|nuORF REV__ENST00000256442.9_1_5:68462964-68463831:+|nuORF MSMS UPN47_class_I_Rep_2 3 405.2732238769531 3 405.272777 1212.7965 NaN NaN NaN NaN NaN NaN NaN 44.695 1 48.05 47.55 48.55 3.3556 0 0 0 0.40191 1 9346 9346 0.23584 0.076522 1 + 38515 21536 24371 24382 43684 43684 0.19861396323744884 RRRIKRWK 8 Unmodified _RRRIKRWK_ 0 0 0 L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|2|1|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|2|1|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 599.890625 2 599.891432 1197.76831 NaN NaN NaN NaN NaN NaN NaN 70.354 1 73.89 73.39 74.39 3.5359 0 0 0 0.40746 1 16360 16360 0.69038 0.16561 1 38516 9265 24372 24383 43685 43685 0.17733834458681486 RRRITLWD 8 Unmodified _RRRITLWD_ 0 0 0 REV__L1PA16_dup12676|chr17:20264819-20266254:-|1.2007342089442958|0.0198946560332943|5.92|151.0|2|1|sense REV__L1PA16_dup12676|chr17:20264819-20266254:-|1.2007342089442958|0.0198946560332943|5.92|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 558.3247680664062 2 558.325257 1114.63596 0.43029 0.00024024 0.15779 8.8097E-05 0.58807 0.00032834 558.3245155505192 94.794 0.13302 94.794 94.731 94.864 0 23 14 3 0 0 0 0.82752 1 23009 23009 0.69038 0 1 111320 + 38517 29350 24373 24384 43686 43686 0.08322764931222082 RRRKAAPL 8 Unmodified _RRRKAAPL_ 0 0 0 ENSG00000092978|ENST00000366935|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 MSMS UPN47_class_I_Rep_2 3 484.30029296875 2 484.317235 966.619916 NaN NaN NaN NaN NaN NaN NaN 55.596 1 58.906 58.406 59.406 3.3102 0 0 0 0.40746 1 12661 12661 0.69038 0 1 38518 1399 24374 24385 43687 43687 0.13527103484966574 RRRKFCFLL 9 Unmodified _RRRKFCFLL_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|474|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|474|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|474|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.869384765625 2 619.868777 1237.723 0.65581 0.00040651 0.74263 0.00046033 1.3984 0.00086685 619.8693690824975 91.906 0.06543 91.906 91.888 91.953 0 8 4 2 0 0 0 0.50015 1 22229 22229 0.6015 0.076735 1 330420 38519 8038 24375 24386 43688 43688 0.1136484788130474 RRRKFCFLL 9 Unmodified _RRRKFCFLL_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|474|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|474|3|anti-sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|474|3|anti-sense MSMS UPN48_class_I_Rep_3 7 619.8690795898438 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 85.365 1 89.114 88.614 89.614 3.7494 0 0 0 0.4007 1 20242 20242 0.52476 0 1 38520 8038 24375 24386 43689 43689 0.1136484788130474 RRRKKFRA 8 Unmodified _RRRKKFRA_ 0 0 0 L1PBa1_dup78|chr3:158500001-158504406:-|1.3679421168972656|0.1037467581300652|3.72|151.0|75|2|sense L1PBa1_dup78|chr3:158500001-158504406:-|1.3679421168972656|0.1037467581300652|3.72|151.0|75|2|sense L1PBa1_dup78|chr3:158500001-158504406:-|1.3679421168972656|0.1037467581300652|3.72|151.0|75|2|sense MSMS UPN48_class_I_Rep_1 5 559.36279296875 2 559.362508 1116.71046 NaN NaN NaN NaN NaN NaN NaN 116.03 1 119.66 119.16 120.16 3.6282 0 0 0 0.40798 1 28245 28245 0 0 1 38521 15406 24376 24387 43690 43690 0.15677572533286366 RRRKKKGT 8 Unmodified _RRRKKKGT_ 0 0 0 L1MCa_dup6083|chr14:92590681-92592122:+|1.1271063041970524|0.0197832535071673|5.83|150.0|28|2|sense L1MCa_dup6083|chr14:92590681-92592122:+|1.1271063041970524|0.0197832535071673|5.83|150.0|28|2|sense L1MCa_dup6083|chr14:92590681-92592122:+|1.1271063041970524|0.0197832535071673|5.83|150.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 515.3427124023438 2 515.341241 1028.66793 NaN NaN NaN NaN NaN NaN NaN 95.139 1 98.756 98.256 99.256 3.6167 0 0 0 0.40753 1 22906 22906 0.6015 0 1 38522 11836 24377 24388 43691 43691 0.15474177405030787 RRRKKKIKK 9 Unmodified _RRRKKKIKK_ 0 0 0 REV__AluJb_dup19190|chr2:197295774-197296072:+|1.0544384681215269|0.0104449961474204|6.66|151.0|4|1|sense REV__AluJb_dup19190|chr2:197295774-197296072:+|1.0544384681215269|0.0104449961474204|6.66|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 620.941650390625 2 620.943665 1239.87278 NaN NaN NaN NaN NaN NaN NaN 55.803 1 59.281 58.781 59.781 3.4785 0 0 0 0.4029 1 12695 12695 0 0 1 + 38523 16930 24378 24389 43692 43692 0.26243536215383756 RRRKKKKK 8 Unmodified _RRRKKKKK_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B;REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF nc|ENSG00000160208|Q14684-2|RRP1B MSMS UPN46_class_I_Rep_3 1 564.4008178710938 2 564.401633 1126.78871 NaN NaN NaN NaN NaN NaN NaN 90.486 1 90.486 89.986 90.986 0 0 0 0 0.40798 1 21823 21823 0 0 1 38524 3860;22279 24379 24390 43693 43693 0.2303900511849406 RRRKKKKT 8 Unmodified _RRRKKKKT_ 0 0 0 REV__AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|4|1|sense REV__AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 550.8796997070312 2 550.877991 1099.74143 NaN NaN NaN NaN NaN NaN NaN 108.42 1 112.05 111.55 112.55 3.6313 0 0 0 0.40753 1 26232 26232 0.6015 0 1 + 38525 16922 24380 24391 43694 43694 0.19554725847501686 RRRKKLIKSLI 11 Unmodified _RRRKKLIKSLI_ 0 0 0 REV__IQCF1|p.Q115Rfs*4|1|0.2|ENSG00000173389|chr3:51895166-51895166|C/-|frameshift_variant REV__IQCF1|p.Q115Rfs*4|1|0.2|ENSG00000173389|chr3:51895166-51895166|C/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 471.12908935546875 3 470.9963 1409.96707 NaN NaN NaN NaN NaN NaN NaN 78.786 1 78.786 78.286 79.286 0 0 0 0 0.38417 1 18472 18472 0 0 1 + 38526 23986 24381 24392 43695 43695 0.2784863024689912 RRRKLALSQ 9 Unmodified _RRRKLALSQ_ 0 0 0 THE1B-int_dup2418|chr9:19250528-19252039:-|1.0104052504232093|0.0212739761302946|5.57|151.0|26|2|sense THE1B-int_dup2418|chr9:19250528-19252039:-|1.0104052504232093|0.0212739761302946|5.57|151.0|26|2|sense THE1B-int_dup2418|chr9:19250528-19252039:-|1.0104052504232093|0.0212739761302946|5.57|151.0|26|2|sense MSMS UPN47_class_I_Rep_1 2 564.3599853515625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 83.589 1 87.127 86.627 87.627 3.5386 0 0 0 0.40098 1 20908 20908 0.45834 0 1 38527 32909 24382 24393 43696 43696 0.14642429230934795 RRRKLILPRR 10 Unmodified _RRRKLILPRR_ 0 0 0 REV__nc|ENSG00000111206|Q08050-2|FOXM1 REV__nc|ENSG00000111206|Q08050-2|FOXM1 MSMS UPN47_class_I_Rep_1 2 455.3123474121094 3 455.312623 1362.91604 NaN NaN NaN NaN NaN NaN NaN 18.36 1 21.94 21.44 22.44 3.5806 0 0 0 0.53105 1 1525 1525 0 0 1 + 38528 18449 24383 24394 43697 43697 0.249097259926657 RRRKMEPS 8 Unmodified _RRRKMEPS_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS UPN47_class_I_Rep_2 3 530.295654296875 2 530.295642 1058.57673 NaN NaN NaN NaN NaN NaN NaN 95.143 1 98.619 98.119 99.119 3.4753 0 0 0 0.40746 1 23427 23427 0.69038 0 1 38529 16836 24384 24395 43698 43698 0.04978545645394661 RRRKRKGK 8 Unmodified _RRRKRKGK_ 0 0 0 L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|4|1|sense L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|4|1|sense L1MEc_dup12386|chr11:9174723-9175994:+|2.3724865532734354|0.0800456856276888|4.89|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 542.8680419921875 2 542.867957 1083.72136 NaN NaN NaN NaN NaN NaN NaN 38.891 1 38.891 38.391 39.391 0 0 0 0 0.40798 1 7438 7438 0 0 1 38530 13012 24385 24396 43699 43699 0.18284974907555807 RRRKRLKKKDR 11 Unmodified _RRRKRLKKKDR_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS UPN46_class_I_Rep_3 1 513.8284912109375 3 514.009603 1539.00698 NaN NaN NaN NaN NaN NaN NaN 66.695 1 66.695 66.195 67.195 0 0 0 0 0.38417 1 15147 15147 0 0 1 38531 837 24386 24397 43700 43700 0.2590356997013714 RRRKRQGH 8 Unmodified _RRRKRQGH_ 0 0 0 ENST00000580483.5_1_18:10525983-10526091:+|nuORF ENST00000580483.5_1_18:10525983-10526091:+|nuORF ENST00000580483.5_1_18:10525983-10526091:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.332275390625 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 115.97 1 119.56 119.06 120.06 3.5943 0 0 0 0.40798 1 28710 28710 0 0 1 38532 7552 24387 24398 43701 43701 0.10630640834006044 RRRKRQGH 8 Unmodified _RRRKRQGH_ 0 0 0 ENST00000580483.5_1_18:10525983-10526091:+|nuORF ENST00000580483.5_1_18:10525983-10526091:+|nuORF ENST00000580483.5_1_18:10525983-10526091:+|nuORF MSMS UPN47_class_I_Rep_3 4 547.3327026367188 2 547.331739 1092.64892 NaN NaN NaN NaN NaN NaN NaN 69.053 1 72.257 71.757 72.757 3.2044 0 0 0 0.40738 1 16816 16816 0.79363 0 1 38533 7552 24387 24398 43702 43702 0.10630640834006044 RRRKRRSH 8 Unmodified _RRRKRRSH_ 0 0 0 L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|78|3|sense L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|78|3|sense L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|78|3|sense MSMS UPN46_class_I_Rep_3 1 576.3604736328125 2 576.358288 1150.70202 NaN NaN NaN NaN NaN NaN NaN 92.238 1 92.238 91.738 92.738 0 0 0 0 0.40753 1 22314 22314 0.6015 0 1 38534 11331 24388 24399 43703 43703 0.13270018616663037 RRRKRTKF 8 Unmodified _RRRKRTKF_ 0 0 0 REV__ENST00000308478.9_1_7:110731416-110762496:+|nuORF REV__ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS UPN46_class_I_Rep_3 1 574.3687133789062 2 574.36779 1146.72103 NaN NaN NaN NaN NaN NaN NaN 12.404 1 12.404 11.904 12.904 0 0 0 0 0.40753 1 104 104 0.6015 0.076735 1 + 38535 21696 24389 24400 43704 43704 0.15353555187698475 RRRKRTKK 8 Unmodified _RRRKRTKK_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 564.3795776367188 2 564.881065 1127.74758 0.42628 0.0002408 -0.53916 -0.00030456 -0.11288 -6.3763E-05 564.8809384082153 108.39 0.18231 112.02 111.95 112.13 3.6313 30 14 4 0 0 0 0.72333 1 26233 26233 0.6015 0 1 1536000 + 38536 21906 24390 24401 43705 43705 0.18881244079034332 RRRKSHFIE 9 Unmodified _RRRKSHFIE_ 0 0 0 REV__ENSG00000108557|ENST00000353383|RAI1 REV__ENSG00000108557|ENST00000353383|RAI1 MSMS UPN48_class_I_Rep_1 5 410.231689453125 3 410.2389 1227.69487 NaN NaN NaN NaN NaN NaN NaN 105.3 1 108.93 108.43 109.43 3.6247 0 0 0 0.39428 1 25368 25368 1.0715 0 1 + 38537 18385 24391 24402 43706 43706 0.09013241225557067 RRRKWIRYRRY 11 Unmodified _RRRKWIRYRRY_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-SECPEP UPN46_class_I_Rep_3 1 569.7914428710938 3 570.341352 1708.00223 0.44349 0.00025294 1.1306 0.00064483 1.5741 0.00089777 570.6773776469602 40.417 0.025631 40.417 40.407 40.432 0 4 2 2 0 0 0 22.551 1 7843 7843 0 0 1 76682 38538 5558 24392 24403 43707 43707 0.17654685827369576 RRRLFPALV 9 Unmodified _RRRLFPALV_ 0 0 0 L1ME3_dup8362|chr19:11044117-11045038:+|2.9909422012187257|0.1425800565034247|4.39|151.0|51|3|anti-sense L1ME3_dup8362|chr19:11044117-11045038:+|2.9909422012187257|0.1425800565034247|4.39|151.0|51|3|anti-sense L1ME3_dup8362|chr19:11044117-11045038:+|2.9909422012187257|0.1425800565034247|4.39|151.0|51|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.3602294921875 2 564.361642 1126.70873 NaN NaN NaN NaN NaN NaN NaN 113.63 1 117.14 116.64 117.64 3.5109 0 0 0 0.40038 1 27644 27644 0.6015 0 1 38539 12610 24393 24404 43708 43708 0.15044518724653244 RRRLGGGA 8 Unmodified _RRRLGGGA_ 0 0 0 ENST00000264657.9_1_17:40500547-40540577:-|nuORF ENST00000264657.9_1_17:40500547-40540577:-|nuORF ENST00000264657.9_1_17:40500547-40540577:-|nuORF MSMS UPN46_class_I_Rep_3 1 421.757080078125 2 421.75701 841.499467 NaN NaN NaN NaN NaN NaN NaN 19.336 1 19.336 18.836 19.836 0 0 0 0 0.40798 1 1827 1827 0 0 1 38540 5992 24394 24405 43709 43709 0.07237695491380691 RRRLHARQA 9 Unmodified _RRRLHARQA_ 0 0 0 REV__ENST00000373302.7_1_9:130374573-130413891:+|nuORF REV__ENST00000373302.7_1_9:130374573-130413891:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 582.3538818359375 2 582.352671 1162.69079 0.51859 0.000302 1.4637 0.00085237 1.9823 0.0011544 582.3533749012619 100.05 0.044052 100.05 100.01 100.05 0 9 5 3 0 0 0 0.48643 1 24385 24385 2.0598 0 1 221270 + 38541 21986 24395 24406 43710 43710 0.11595196522512197 RRRLHARQA 9 Unmodified _RRRLHARQA_ 0 0 0 REV__ENST00000373302.7_1_9:130374573-130413891:+|nuORF REV__ENST00000373302.7_1_9:130374573-130413891:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 582.352671 1162.69079 0.48031 0.00027971 2.0849 0.0012141 2.5652 0.0014938 582.3535372098885 96.268 0.070343 100.05 100.04 100.11 3.7804 -0.055367 0.00041257 NaN 2.0598 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 86245 + 38542 21986 24395 24406 0.11595196522512197 RRRLHARQA 9 Unmodified _RRRLHARQA_ 0 0 0 REV__ENST00000373302.7_1_9:130374573-130413891:+|nuORF REV__ENST00000373302.7_1_9:130374573-130413891:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 582.352671 1162.69079 0.49249 0.0002868 1.692 0.00098536 2.1845 0.0012722 582.3534205463908 96.31 0.10164 100.22 100.13 100.23 3.9084 0.11392 -4.4956E-05 NaN 2.0598 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 162010 + 38543 21986 24395 24406 0.11595196522512197 RRRLLIKKM 9 Unmodified _RRRLLIKKM_ 0 0 0 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 MSMS UPN47_class_I_Rep_3 4 405.27325439453125 3 405.272777 1212.7965 NaN NaN NaN NaN NaN NaN NaN 55.936 1 59.114 58.614 59.614 3.1779 0 0 0 0.40177 1 12822 12822 0.26902 0.033176 1 38544 2459 24396 24407 43711 43711 0.19861396323767622 RRRLQIIRLLR 11 Unmodified _RRRLQIIRLLR_ 0 0 0 L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 498.3397216796875 3 498.338949 1491.99502 NaN NaN NaN NaN NaN NaN NaN 31.635 1 31.635 31.135 32.135 0 0 0 0 0.38417 1 5312 5312 0 0 1 38545 14188 24397 24408 43712 43712 0.268699532269693 RRRLQIIRLLR 11 Unmodified _RRRLQIIRLLR_ 0 0 0 L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 498.34027099609375 3 498.338949 1491.99502 NaN NaN NaN NaN NaN NaN NaN 36.279 1 36.279 35.779 36.779 0 0 0 0 0.38417 1 6707 6707 0 0 1 38546 14188 24397 24408 43713 43713 0.268699532269693 RRRLQIIRLLR 11 Unmodified _RRRLQIIRLLR_ 0 0 0 L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 498.3401794433594 3 498.338949 1491.99502 NaN NaN NaN NaN NaN NaN NaN 37.611 1 37.611 37.111 38.111 0 0 0 0 0.38417 1 7089 7089 0 0 1 38547 14188 24397 24408 43714 43714 0.268699532269693 RRRLQIIRLLR 11 Unmodified _RRRLQIIRLLR_ 0 0 0 L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense L1PA2_dup234|chr1:178837548-178843666:+|5.549538512549146|0.3619849158909101|3.94|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 498.3393249511719 3 498.338949 1491.99502 NaN NaN NaN NaN NaN NaN NaN 78.033 1 78.033 77.533 78.533 0 0 0 0 0.38417 1 18261 18261 0 0 1 38548 14188 24397 24408 43715 43715 0.268699532269693 RRRLQKMGS 9 Unmodified _RRRLQKMGS_ 0 0 0 L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|61|2|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|61|2|sense L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|61|2|sense MSMS UPN46_class_I_Rep_3 1 566.328369140625 2 566.330016 1130.64548 NaN NaN NaN NaN NaN NaN NaN 14.453 1 14.453 13.953 14.953 0 0 0 0 0.38639 1 636 636 3.9444 0 1 38549 13579 24398 24409 43716 43716 0.08538209945118069 RRRLRQQLGP 10 Unmodified _RRRLRQQLGP_ 0 0 0 REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5 REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5 MSMS UPN47_class_I_Rep_3 4 640.3931274414062 2 640.394536 1278.77452 NaN NaN NaN NaN NaN NaN NaN 51.722 1 54.927 54.427 55.427 3.2055 0 0 0 0.53105 1 11534 11534 0.45834 0.057624 1 + 38550 21409 24399 24410 43717 43717 0.14628307899556603 RRRLRRLEPAR 11 Unmodified _RRRLRRLEPAR_ 0 0 0 REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 493.31243896484375 3 493.646553 1477.91783 0.27633 0.00013641 -0.11086 -5.4728E-05 0.16546 8.1681E-05 493.64662544980985 44.729 0.18443 44.729 44.641 44.825 0 18 14 2 0 0 0 22.551 1 9050 9050 0.094841 0 1 783850 + 38551 20949 24400 24411 43718 43718 0.19798735010658675 RRRLRVASRHR 11 Unmodified _RRRLRVASRHR_ 0 0 0 ENST00000493197.5_1_5:177658804-177659618:-|nuORF ENST00000493197.5_1_5:177658804-177659618:-|nuORF ENST00000493197.5_1_5:177658804-177659618:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 488.3069152832031 3 488.306531 1461.89776 0.30652 0.00014968 -0.49709 -0.00024273 -0.19057 -9.3058E-05 488.306286571913 62.606 0.42987 66.08 65.848 66.278 3.4738 42 27 3 0 0 0 0.67356 1 13952 13952 1.1098 0.54658 1 137580 38552 7079 24401 24412 43719 43719 0.18528984070690058 RRRLRVASRHR 11 Unmodified _RRRLRVASRHR_ 0 0 0 ENST00000493197.5_1_5:177658804-177659618:-|nuORF ENST00000493197.5_1_5:177658804-177659618:-|nuORF ENST00000493197.5_1_5:177658804-177659618:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 488.306531 1461.89776 0.29271 0.00014293 -0.69004 -0.00033695 -0.39733 -0.00019402 488.30597360648096 62.456 0.30993 65.918 65.718 66.028 3.4625 -0.080784 -8.1067E-05 NaN 1.1098 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 148420 38553 7079 24401 24412 0.18528984070690058 RRRLWRWWKLQ 11 Unmodified _RRRLWRWWKLQ_ 0 0 0 chr12:54283225-54283827|151|62.83|0.0|22.58|+|1|HNRNPA1,HNRNPA1|2 chr12:54283225-54283827|151|62.83|0.0|22.58|+|1|HNRNPA1,HNRNPA1|2 chr12:54283225-54283827|151|62.83|0.0|22.58|+|1|HNRNPA1,HNRNPA1|2 MULTI-SECPEP UPN46_class_I_Rep_3 1 421.7584228515625 4 421.750931 1682.97462 -0.1499 -6.322E-05 2.4178 0.0010197 2.2679 0.00095649 422.00285087361476 30.435 0.1499 30.435 30.327 30.477 0 19 11 3 0 0 0 22.551 1 4925 4925 0 0 1 65288 38554 582 24402 24413 43720 43720 0.1604478256715538 RRRMKKKK 8 Unmodified _RRRMKKKK_ 0 0 0 ENST00000235372.11_1_1:14105080-14105206:+|nuORF ENST00000235372.11_1_1:14105080-14105206:+|nuORF ENST00000235372.11_1_1:14105080-14105206:+|nuORF MSMS UPN46_class_I_Rep_3 1 565.87451171875 2 565.874394 1129.73423 NaN NaN NaN NaN NaN NaN NaN 16.972 1 16.972 16.472 17.472 0 0 0 0 0.40798 1 1263 1263 0 0 1 38555 5893 24403 24414 43721 43721 0.17455669975424826 RRRMLINSQRR 11 Unmodified _RRRMLINSQRR_ 0 0 0 ENST00000371485.7_1_10:95262882-95262948:+|nuORF ENST00000371485.7_1_10:95262882-95262948:+|nuORF ENST00000371485.7_1_10:95262882-95262948:+|nuORF MSMS UPN48_class_I_Rep_2 6 495.9596252441406 3 495.960032 1484.85827 NaN NaN NaN NaN NaN NaN NaN 96.456 1 100.24 99.737 100.74 3.7804 0 0 0 0.38417 1 22913 22913 0.45452 0.35968 1 38556 6391 24404 24415 43722 43722 0.13523096004928448 RRRMPAPY 8 Unmodified _RRRMPAPY_ 0 0 0 REV__nc|ENSG00000125449|Q9H6L4-2|ARMC7 REV__nc|ENSG00000125449|Q9H6L4-2|ARMC7 MULTI-SECPEP UPN46_class_I_Rep_3 1 524.240478515625 2 523.787453 1045.56035 0.31376 0.00016434 -4.3371 -0.0022717 -4.0233 -0.0021074 524.2865018553193 42.595 0.065975 42.595 42.568 42.634 0 6 4 2 0 0 0 0.72333 1 8450 8450 0.69038 0 1 167190 + 38557 31972 24405 24416 43723 43723 0.03939464479299204 RRRNDHRR 8 Unmodified _RRRNDHRR_ 0 0 0 REV__ENST00000570051.5_1_16:2312273-2318093:-|nuORF REV__ENST00000570051.5_1_16:2312273-2318093:-|nuORF MSMS UPN48_class_I_Rep_1 5 583.3300170898438 2 583.329728 1164.6449 NaN NaN NaN NaN NaN NaN NaN 19.245 1 22.783 22.283 23.283 3.5378 0 0 0 0.40798 1 1425 1425 0 0 1 + 38558 21227 24406 24417 43724 43724 0.06916551340259502 RRRNKPDVS 9 Unmodified _RRRNKPDVS_ 0 0 0 REV__HERVH-int_dup5197|chr16:8843827-8845026:-|1.465704079377304|0.2419485283225036|2.6|151.0|4|1|sense REV__HERVH-int_dup5197|chr16:8843827-8845026:-|1.465704079377304|0.2419485283225036|2.6|151.0|4|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 563.8225708007812 2 564.323245 1126.63194 0.4069 0.00022963 0.76407 0.00043118 1.171 0.00066081 564.3238476734253 48.146 0.19524 48.146 48.097 48.293 0 26 19 2 0 0 0 0.12462 1 10012 10012 1.8442 0 1 154240 + 38559 23687 24407 24418 43725 43725 0.07368675437510319 RRRNLLLRRF 10 Unmodified _RRRNLLLRRF_ 0 0 0 ENST00000544844.5_1_11:64085187-64085430:-|nuORF ENST00000544844.5_1_11:64085187-64085430:-|nuORF ENST00000544844.5_1_11:64085187-64085430:-|nuORF MSMS UPN48_class_I_Rep_1 5 467.3012390136719 3 467.300494 1398.87965 NaN NaN NaN NaN NaN NaN NaN 105.79 1 109.42 108.92 109.92 3.6277 0 0 0 0.53105 1 25488 25488 1.7423 0.52744 1 38560 7370 24408 24419 43726 43726 0.19616849095950784 RRRNLYYHPKE 11 Unmodified _RRRNLYYHPKE_ 0 0 0 REV__L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|72|2|sense REV__L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|72|2|sense MSMS UPN48_class_I_Rep_2 6 511.2792053222656 3 511.279536 1530.81678 NaN NaN NaN NaN NaN NaN NaN 69.407 1 72.928 72.428 73.428 3.5216 0 0 0 0.38417 1 16077 16077 0.094841 0 1 + 38561 30007 24409 24420 43727 43727 0.0726023851723312 RRRPRDRR 8 Unmodified _RRRPRDRR_ 0 0 0 ENST00000508198.5_1_4:152330433-152375872:+|nuORF ENST00000508198.5_1_4:152330433-152375872:+|nuORF ENST00000508198.5_1_4:152330433-152375872:+|nuORF MSMS UPN47_class_I_Rep_1 2 584.3567504882812 2 584.355745 1166.69694 NaN NaN NaN NaN NaN NaN NaN 83.676 1 87.242 86.742 87.742 3.5655 0 0 0 0.40746 1 20933 20933 0.69038 0 1 38562 7166 24410 24421 43728 43728 0.12025714754008732 RRRPRDRR 8 Unmodified _RRRPRDRR_ 0 0 0 ENST00000508198.5_1_4:152330433-152375872:+|nuORF ENST00000508198.5_1_4:152330433-152375872:+|nuORF ENST00000508198.5_1_4:152330433-152375872:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 584.8595581054688 2 584.355745 1166.69694 0.42632 0.00024912 1.3912 0.00081296 1.8175 0.0010621 584.3564322372874 83.185 0.064613 86.772 86.746 86.81 3.5871 7 4 2 0 0 0 0.82752 1 19895 19895 0.69038 0 1 98094 38563 7166 24410 24421 43729 43729 0.12025714754008732 RRRPRRRTRRQ 11 Unmodified _RRRPRRRTRRQ_ 0 0 0 REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 532.0010986328125 3 532.000101 1592.97847 0.47366 0.00025199 1.3118 0.0006979 1.7855 0.00094989 532.0006923690497 107.26 0.094742 110.93 110.88 110.97 3.6724 14 8 2 0 0 0 0.6724 1 26274 26274 1.2148 0.20126 1 3826500 + 38564 21516 24411 24422 43730 43730 0.20570265113542519 RRRPRVWA 8 Unmodified _RRRPRVWA_ 0 0 0 ENST00000268893.10_1_17:56387876-56387978:-|nuORF ENST00000268893.10_1_17:56387876-56387978:-|nuORF ENST00000268893.10_1_17:56387876-56387978:-|nuORF MSMS UPN46_class_I_Rep_3 1 548.7738037109375 2 548.833583 1095.65261 NaN NaN NaN NaN NaN NaN NaN 16.871 1 16.871 16.371 17.371 0 0 0 0 0.40604 1 1238 1238 2.5775 0 1 38565 6007 24412 24423 43731 43731 0.10861310607856467 RRRPRVWA 8 Unmodified _RRRPRVWA_ 0 0 0 ENST00000268893.10_1_17:56387876-56387978:-|nuORF ENST00000268893.10_1_17:56387876-56387978:-|nuORF ENST00000268893.10_1_17:56387876-56387978:-|nuORF MSMS UPN47_class_I_Rep_3 4 548.8340454101562 2 548.833583 1095.65261 NaN NaN NaN NaN NaN NaN NaN 117.35 1 120.79 120.29 121.29 3.4425 0 0 0 0.40746 1 28907 28907 0.69038 0 1 38566 6007 24412 24423 43732 43732 0.10861310607856467 RRRPSWTR 8 Unmodified _RRRPSWTR_ 0 0 0 REV__ENST00000321892.8_1_17:65822219-65850151:+|nuORF REV__ENST00000321892.8_1_17:65822219-65850151:+|nuORF MSMS UPN47_class_I_Rep_1 2 557.8193359375 2 557.820673 1113.62679 NaN NaN NaN NaN NaN NaN NaN 26.231 1 29.993 29.493 30.493 3.7624 0 0 0 0.40625 1 3723 3723 2.3027 0 1 + 38567 21743 24413 24424 43733 43733 0.07452416365549652 RRRQLYRRERR 11 Unmodified _RRRQLYRRERR_ 0 0 0 REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46 REV__nc|ENSG00000179362|Q86SG4-3|HMGN2P46 MSMS UPN46_class_I_Rep_3 1 548.9967651367188 3 548.996245 1643.96691 NaN NaN NaN NaN NaN NaN NaN 93.436 1 93.436 92.936 93.936 0 0 0 0 0.38417 1 22643 22643 0 0 1 + 38568 32072 24414 24425 43734 43734 0.1706802329954371 RRRQWAMRS 9 Unmodified _RRRQWAMRS_ 0 0 0 REV__LTR1F_dup122|chr14:73416786-73417491:+|1.0006118407869131|0.0101765606840172|6.62|151.0|9|2|sense REV__LTR1F_dup122|chr14:73416786-73417491:+|1.0006118407869131|0.0101765606840172|6.62|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 416.2281494140625 3 416.228118 1245.66253 NaN NaN NaN NaN NaN NaN NaN 101.16 1 101.16 100.66 101.66 0 0 0 0 0.39887 1 24679 24679 0.96228 0 1 + 38569 30874 24415 24426 43735 43735 0.04952130550896072 RRRQWRKTRA 10 Unmodified _RRRQWRKTRA_ 0 0 0 nc|ENSG00000175513|Q3SY00-2|TSGA10IP;ENSG00000175513|ENST00000532620|TSGA10IP nc|ENSG00000175513|Q3SY00-2|TSGA10IP nc|ENSG00000175513|Q3SY00-2|TSGA10IP MULTI-MSMS UPN48_class_I_Rep_3 7 471.9521179199219 3 471.951865 1412.83377 0.20626 9.7346E-05 0.096616 4.5598E-05 0.30288 0.00014294 471.95181485346643 98.701 0.35421 102.59 102.54 102.9 3.8839 86 49 2 0 0 0 0.56523 1 23449 23449 0.13989 0.04505 1 447950 38570 4727 24416 24427 43736 43736 0.14386203913727513 RRRRAERGARR 11 Unmodified _RRRRAERGARR_ 0 0 0 REV__ENST00000372469.5_1_9:132427956-132481510:+|nuORF REV__ENST00000372469.5_1_9:132427956-132481510:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 480.6264343261719 3 480.626152 1438.85663 0.11747 5.646E-05 -0.035809 -1.7211E-05 0.081663 3.925E-05 480.62626924661504 102.82 0.030457 106.43 106.41 106.44 3.6164 11 3 4 0 0 0 0.68081 1 24787 24787 0.45452 0 1 167210 + 38571 21976 24417 24428 43737 43737 0.15475223031194218 RRRRAGGA 8 Unmodified _RRRRAGGA_ 0 0 0 ENST00000358752.3_1_11:94277417-94277780:+|nuORF REV__ENST00000263734.4_1_2:46574046-46574127:+|nuORF REV__ENST00000263734.4_1_2:46574046-46574127:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 449.76031494140625 2 450.273358 898.532164 0.18548 8.3515E-05 1.7973 0.00080928 1.9828 0.0008928 450.2743727588183 109.16 0.075661 109.16 109.13 109.21 0 9 5 3 0 0 0 0.72333 1 26762 26762 2.5775 0 1 1010800 38572 6300 24418 24429 43738 43738 0.07883902614230465 RRRRAGGA 8 Unmodified _RRRRAGGA_ 0 0 0 ENST00000358752.3_1_11:94277417-94277780:+|nuORF REV__ENST00000263734.4_1_2:46574046-46574127:+|nuORF REV__ENST00000263734.4_1_2:46574046-46574127:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 450.273358 898.532164 0.004761 2.1437E-06 2.9956 0.0013488 3.0004 0.001351 450.2746040822991 105.85 0.1177 109.48 109.39 109.51 3.6277 0.16162 1.1528E-05 NaN 2.5775 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 126660 38573 6300 24418 24429 0.07883902614230465 RRRRAIQRR 9 Unmodified _RRRRAIQRR_ 0 0 0 REV__ENST00000361837.8_1_16:2510099-2510671:+|nuORF REV__ENST00000361837.8_1_16:2510099-2510671:+|nuORF MSMS UPN46_class_I_Rep_3 1 422.90185546875 3 423.272939 1266.79699 NaN NaN NaN NaN NaN NaN NaN 99.785 1 99.785 99.285 100.29 0 0 0 0 0.40177 1 24317 24317 0.26902 0 1 + 38574 21911 24419 24430 43739 43739 0.17425952087819496 RRRRALLL 8 Unmodified _RRRRALLL_ 0 0 0 REV__ENST00000539783.5_2_2:172290933-172291600:+|nuORF REV__ENST00000539783.5_2_2:172290933-172291600:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 526.822021484375 2 527.359434 1052.70431 0.46203 0.00024365 1.8728 0.00098766 2.3349 0.0012313 527.360304641721 109.04 0.1509 112.72 112.65 112.8 3.6751 23 17 2 0 0 0 0.72333 1 25875 25875 2.5775 0 1 1712100 + 38575 22907 24420 24431 43740 43740 0.18007054301756398 RRRRALLL 8 Unmodified _RRRRALLL_ 0 0 0 REV__ENST00000539783.5_2_2:172290933-172291600:+|nuORF REV__ENST00000539783.5_2_2:172290933-172291600:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 527.359434 1052.70431 0.40515 0.00021366 1.663 0.00087698 2.0681 0.0010906 527.3602286205122 109.02 0.12675 112.69 112.66 112.79 3.6715 -0.014813 -0.00012702 NaN 2.5775 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2782200 + 38576 22907 24420 24431 0.18007054301756398 RRRRAPLP 8 Unmodified _RRRRAPLP_ 0 0 0 ENST00000369604.5_1_1:114301878-114302094:-|nuORF ENST00000369604.5_1_1:114301878-114302094:-|nuORF ENST00000369604.5_1_1:114301878-114302094:-|nuORF MSMS UPN48_class_I_Rep_3 7 511.3274230957031 2 511.328134 1020.64171 NaN NaN NaN NaN NaN NaN NaN 88.055 1 91.865 91.365 92.365 3.8104 0 0 0 0.40364 1 20897 20897 5.7604 0 1 38577 6375 24421 24432 43741 43741 0.13221908233549584 RRRRAPLP 8 Unmodified _RRRRAPLP_ 0 0 0 ENST00000369604.5_1_1:114301878-114302094:-|nuORF ENST00000369604.5_1_1:114301878-114302094:-|nuORF ENST00000369604.5_1_1:114301878-114302094:-|nuORF MSMS UPN48_class_I_Rep_3 7 511.3274841308594 2 511.328134 1020.64171 NaN NaN NaN NaN NaN NaN NaN 88.18 1 91.99 91.49 92.49 3.8104 0 0 0 0.40364 1 20931 20931 5.7604 0 1 38578 6375 24421 24432 43742 43742 0.13221908233549584 RRRRAPLP 8 Unmodified _RRRRAPLP_ 0 0 0 ENST00000369604.5_1_1:114301878-114302094:-|nuORF ENST00000369604.5_1_1:114301878-114302094:-|nuORF ENST00000369604.5_1_1:114301878-114302094:-|nuORF MSMS UPN48_class_I_Rep_3 7 511.3275451660156 2 511.328134 1020.64171 NaN NaN NaN NaN NaN NaN NaN 88.347 1 92.158 91.658 92.658 3.8104 0 0 0 0.40604 1 20969 20969 2.5775 0 1 38579 6375 24421 24432 43743 43743 0.13221908233549584 RRRRDPRKGL 10 Unmodified _RRRRDPRKGL_ 0 0 0 ENST00000569978.1_1_16:29819442-29819613:+|nuORF ENST00000569978.1_1_16:29819442-29819613:+|nuORF ENST00000569978.1_1_16:29819442-29819613:+|nuORF MSMS UPN48_class_I_Rep_1 5 437.2746276855469 3 437.272716 1308.79632 NaN NaN NaN NaN NaN NaN NaN 98.014 1 101.62 101.12 102.12 3.6065 0 0 0 0.53105 1 23643 23643 0.15932 0.01943 1 38580 7510 24422 24433 43744 43744 0.15427112648103503 RRRREWFV 8 Unmodified _RRRREWFV_ 0 0 0 REV__ENST00000495311.1_1_4:57844993-57845074:+|nuORF REV__ENST00000495311.1_1_4:57844993-57845074:+|nuORF MSMS UPN48_class_I_Rep_2 6 602.8455200195312 2 602.844148 1203.67374 NaN NaN NaN NaN NaN NaN NaN 31.916 1 35.557 35.057 36.057 3.641 0 0 0 0.40746 1 4863 4863 0.69038 0.088878 1 + 38581 22652 24423 24434 43745 43745 0.08005275916684695 RRRRFARF 8 Unmodified _RRRRFARF_ 0 0 0 REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|206|1|anti-sense REV__L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|206|1|anti-sense MSMS UPN48_class_I_Rep_1 5 582.8521728515625 2 582.852307 1163.69006 NaN NaN NaN NaN NaN NaN NaN 53.201 1 56.721 56.221 57.221 3.5192 0 0 0 0.40746 1 11142 11142 0.69038 0 1 + 38582 28844 24424 24435 43746 43746 0.1147640187343768 RRRRGGSG 8 Unmodified _RRRRGGSG_ 0 0 0 MSTB1_dup3782|chr15:42257138-42257553:+|1.0010041562544485|0.0186535783940814|5.75|151.0|28|3|anti-sense;ENST00000380262.7_1_17:7847547-7849136:+|nuORF;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2 REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF;nc|ENSG00000167978|Q9UQ35-2|SRRM2 nc|ENSG00000167978|Q9UQ35-2|SRRM2 MSMS UPN48_class_I_Rep_2 6 451.2632141113281 2 451.262991 900.511428 NaN NaN NaN NaN NaN NaN NaN 113.8 1 117.46 116.96 117.96 3.663 0 0 0 0.40746 1 27172 27172 0.69038 0 1 38583 4340;21969 24425 24436 43747 43747 0.05719312234577956 RRRRHKGW 8 Unmodified _RRRRHKGW_ 0 0 0 ENST00000367090.3_1_6:158957687-158957789:+|nuORF ENST00000367090.3_1_6:158957687-158957789:+|nuORF ENST00000367090.3_1_6:158957687-158957789:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 576.34228515625 2 576.342107 1150.66966 0.47918 0.00027617 0.33504 0.0001931 0.81422 0.00046927 576.3420569598707 107.93 0.19566 111.61 111.59 111.79 3.6746 28 18 3 0 0 0 0.82752 1 25571 25571 0 0 1 2692200 38584 6342 24426 24437 43748 43748 0.10035231213669249 RRRRHRQRLL 10 Unmodified _RRRRHRQRLL_ 0 0 0 ENST00000403681.6_2_12:66218024-66218900:+|nuORF ENST00000403681.6_2_12:66218024-66218900:+|nuORF ENST00000403681.6_2_12:66218024-66218900:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 482.9751281738281 3 482.974893 1445.90285 0.13372 6.4583E-05 0.012657 6.1131E-06 0.14638 7.0696E-05 482.97469925884053 50.736 1.074 54.26 53.654 54.728 3.5246 182 67 3 0 0 0 0.56523 4 10342 10342;10388;10437;10484 0.13989 0.13989 1 222940 38585 6604 24427 24438 43749;43750;43751;43752 43749 0.1977328793329889 RRRRHRQRLL 10 Unmodified _RRRRHRQRLL_ 0 0 0 ENST00000403681.6_2_12:66218024-66218900:+|nuORF ENST00000403681.6_2_12:66218024-66218900:+|nuORF ENST00000403681.6_2_12:66218024-66218900:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 482.9752197265625 3 482.974893 1445.90285 0.22306 0.00010773 0.019484 9.4105E-06 0.24254 0.00011714 482.97459690146 50.503 1.442 54.198 53.65 55.092 3.6946 203 91 3 0 0 0 0.56454 4 10348 10215;10258;10348;10451 0.62683 0.21856 1 258060 38586 6604 24427 24438 43753;43754;43755;43756 43755 0.1977328793329889 RRRRHRQRLL 10 Unmodified _RRRRHRQRLL_ 0 0 0 ENST00000403681.6_2_12:66218024-66218900:+|nuORF ENST00000403681.6_2_12:66218024-66218900:+|nuORF ENST00000403681.6_2_12:66218024-66218900:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 482.97479248046875 3 482.974893 1445.90285 0.11343 5.4784E-05 1.7779 0.00085869 1.8913 0.00091347 483.3088914321587 50.714 1.0177 54.335 53.971 54.989 3.621 148 67 4 0 0 0 0.56523 2 10369 10369;10414 0.13989 0.04505 1 278440 38587 6604 24427 24438 43757;43758 43757 0.1977328793329889 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS UPN48_class_I_Rep_2 6 478.9747009277344 3 478.974893 1433.90285 NaN NaN NaN NaN NaN NaN NaN 41.623 1 45.374 44.874 45.874 3.7508 0 0 0 0.53105 1 7620 7620 0.12286 0.028024 1 + 38588 31937 24428 24439 43759 43759 0.2032528793331494 RRRRKRRRMKK 11 Unmodified _RRRRKRRRMKK_ 0 0 0 ENST00000235372.11_1_1:14105080-14105206:+|nuORF ENST00000235372.11_1_1:14105080-14105206:+|nuORF ENST00000235372.11_1_1:14105080-14105206:+|nuORF MSMS UPN46_class_I_Rep_3 1 543.01318359375 3 543.021848 1626.04372 NaN NaN NaN NaN NaN NaN NaN 54.265 1 54.265 53.765 54.765 0 0 0 0 0.38417 1 11734 11734 0 0 1 38589 5893 24429 24440 43760 43760 0.25573543315044844 RRRRKWKGRRR 11 Unmodified _RRRRKWKGRRR_ 0 0 0 REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT MULTI-MSMS UPN48_class_I_Rep_2 6 537.6766967773438 3 537.676958 1610.00904 0.46101 0.00024787 -0.80712 -0.00043397 -0.34611 -0.0001861 538.0108593004442 107.22 0.048569 110.9 110.87 110.92 3.6783 16 5 4 0 0 0 0.68491 1 25333 25333 0.08335 0 1 2610900 + 38590 31976 24430 24441 43761 43761 0.2284404349857141 RRRRKWKGRRR 11 Unmodified _RRRRKWKGRRR_ 0 0 0 REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 537.676958 1610.00904 0.35289 0.00018974 -1.0549 -0.00056721 -0.70203 -0.00037747 537.6762645952538 107.25 0.12133 110.88 110.83 110.95 3.6299 -0.013463 -0.00029528 NaN 0.08335 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 9943500 + 38591 31976 24430 24441 0.2284404349857141 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 473.2991943359375 3 473.29922 1416.87583 0.23087 0.00010927 -0.10148 -4.8029E-05 0.12939 6.124E-05 473.2990262517003 102.93 0.30817 106.71 106.47 106.78 3.7788 70 42 3 0 0 0 0.5652 1 25329 25329 0.15932 0.01943 1 163020 + 38592 23009 24431 24442 43762 43762 0.18406720006237265 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 473.2990417480469 3 473.29922 1416.87583 0.089899 4.2549E-05 -0.02838 -1.3432E-05 0.061519 2.9117E-05 473.2991400427903 102.96 0.32109 106.57 106.47 106.79 3.6164 66 43 2 0 0 0 0.56433 1 24813 24813 0.77653 0.77653 1 1179100 + 38593 23009 24431 24442 43763 43763 0.18406720006237265 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 473.2990417480469 3 473.29922 1416.87583 0.090409 4.279E-05 0.13677 6.4732E-05 0.22718 0.00010752 473.29920641209543 102.84 0.39424 106.45 106.17 106.57 3.6164 103 55 4 0 0 0 0.84575 1 24813 24813 0.77653 0.77653 1 1276500 + 38594 23009 24431 24442 43764 43764 0.18406720006237265 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 473.29922 1416.87583 0.24804 0.0001174 -0.4123 -0.00019514 -0.16426 -7.7743E-05 473.2990465604329 106.63 0.04718 106.63 106.62 106.67 0 0.058292 -0.00055316 NaN 0.77653 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66641 + 38595 23009 24431 24442 0.18406720006237265 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 473.29922 1416.87583 0.23087 0.00010927 -0.10148 -4.8029E-05 0.12939 6.124E-05 473.2990262517003 102.93 0.30817 106.71 106.47 106.78 3.7788 0.12972 -0.00011183 NaN 0.77653 70 42 3 NaN NaN NaN NaN 0 NaN NaN 0 163020 + 38596 23009 24431 24442 0.18406720006237265 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 473.29922 1416.87583 0.28831 0.00013645 -0.23056 -0.00010913 0.057742 2.7329E-05 473.29911643099183 102.86 0.069443 106.38 106.34 106.41 3.5231 -0.19626 -0.00029512 NaN 0.77653 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 146360 + 38597 23009 24431 24442 0.18406720006237265 RRRRMKMKKK 10 Unmodified _RRRRMKMKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 473.29922 1416.87583 0.070932 3.3572E-05 0.15703 7.4321E-05 0.22796 0.00010789 473.29922961363104 103.08 0.40894 106.59 106.37 106.77 3.5057 0.01218 0.00025522 NaN 0.77653 90 59 2 NaN NaN NaN NaN 0 NaN NaN 0 171910 + 38598 23009 24431 24442 0.18406720006237265 RRRRMKRRRQQ 11 Unmodified _RRRRMKRRRQQ_ 0 0 0 REV__ENST00000525722.1_1_11:812627-812858:+|nuORF REV__ENST00000525722.1_1_11:812627-812858:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 542.3662109375 3 542.997591 1625.97094 0.53737 0.00029179 2.8236 0.0015332 3.3609 0.001825 543.3330354132675 108.18 0.10831 111.82 111.77 111.88 3.6355 15 11 2 0 0 0 22.551 1 26563 26563 0 0 1 690470 + 38599 22806 24432 24443 43765 43765 0.18299789521643106 RRRRPEPL 8 Unmodified _RRRRPEPL_ 0 0 0 REV__ENST00000380752.9_1_13:30127989-30169592:-|nuORF REV__ENST00000380752.9_1_13:30127989-30169592:-|nuORF MSMS UPN47_class_I_Rep_1 2 540.3304443359375 2 540.330873 1078.64719 NaN NaN NaN NaN NaN NaN NaN 79.974 1 83.439 82.939 83.939 3.465 0 0 0 0.40746 1 19935 19935 0.69038 0 1 + 38600 22056 24433 24444 43766 43766 0.1110158702535955 RRRRPLRRRDG 11 Unmodified _RRRRPLRRRDG_ 0 0 0 ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL ENST00000503648.1_1_16:1451355-1464692:-|nuORF ENST00000503648.1_1_16:1451355-1464692:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 498.64178466796875 3 498.641802 1492.90358 0.13923 6.9426E-05 -0.10359 -5.1653E-05 0.035642 1.7773E-05 498.6416306116673 55.491 0.57357 59.047 58.782 59.356 3.5554 75 35 3 0 0 0 0.68478 1 11714 11714 0.094841 0 1 197910 38601 961 24434 24445 43767 43767 0.1768408258233194 RRRRPRRRRPR 11 Unmodified _RRRRPRRRRPR_ 0 0 0 ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF ENST00000557385.1_1_X:119384635-119386530:+|nuORF ENST00000557385.1_1_X:119384635-119386530:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 405.8887939453125 4 405.263799 1617.02609 -0.044533 -1.8048E-05 -2.2063 -0.00089415 -2.2509 -0.0009122 405.51341069687265 53.149 0.33163 56.732 56.498 56.83 3.5836 27 20 2 0 0 0 22.551 1 11002 11002 0 0 1 166270 38602 6168 24435 24446 43768 43768 0.2422596410440292 RRRRPRRRRPR 11 Unmodified _RRRRPRRRRPR_ 0 0 0 ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF ENST00000557385.1_1_X:119384635-119386530:+|nuORF ENST00000557385.1_1_X:119384635-119386530:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 4 405.263799 1617.02609 0.15349 6.2202E-05 -2.2526 -0.00091288 -2.0991 -0.00085068 405.5132498756291 53.458 0.26694 57.068 57.003 57.27 3.6098 0.1678 -4.1788E-05 NaN 0 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 145620 38603 6168 24435 24446 0.2422596410440292 RRRRPRRRVP 10 Unmodified _RRRRPRRRVP_ 0 0 0 REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 469.3056945800781 3 468.971371 1403.89228 0.11468 5.3781E-05 -0.61954 -0.00029054 -0.50486 -0.00023676 468.9710621016604 48.424 0.52509 52.058 51.678 52.203 3.6339 62 35 2 0 0 0 0.56444 1 9523 9523 0.69767 0.53834 1 139410 + 38604 21882 24436 24447 43769 43769 0.20649305278834618 RRRRPRRRVP 10 Unmodified _RRRRPRRRVP_ 0 0 0 REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 468.9713439941406 3 468.971371 1403.89228 0.10824 5.0762E-05 -0.52987 -0.0002485 -0.42163 -0.00019773 468.97095821202754 48.857 0.219 52.486 52.421 52.64 3.6291 22 18 2 0 0 0 0.56444 1 9739 9739 0.69767 0.24315 1 143670 + 38605 21882 24436 24447 43770 43770 0.20649305278834618 RRRRRAHRE 9 Unmodified _RRRRRAHRE_ 0 0 0 REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF MSMS UPN48_class_I_Rep_3 7 646.8854370117188 2 646.885201 1291.75585 NaN NaN NaN NaN NaN NaN NaN 27.13 1 30.886 30.386 31.386 3.7555 0 0 0 0.4029 1 3526 3526 0 0 1 + 38606 21719 24437 24448 43771 43771 0.12164191048373141 RRRRRAQVRLR 11 Unmodified _RRRRRAQVRLR_ 0 0 0 ENST00000477216.1_1_3:170075473-170077492:+|nuORF ENST00000477216.1_1_3:170075473-170077492:+|nuORF ENST00000477216.1_1_3:170075473-170077492:+|nuORF MSMS UPN46_class_I_Rep_3 1 508.3312683105469 3 508.329447 1521.96651 NaN NaN NaN NaN NaN NaN NaN 12.509 1 12.509 12.009 13.009 0 0 0 0 0.38417 1 131 131 0.094841 0.094841 1 38607 6974 24438 24449 43772 43772 0.22640648370384042 RRRRRGGGGG 10 Unmodified _RRRRRGGGGG_ 0 0 0 ENSG00000100596.7,SPTLC2,chr14,-,I11.1,77521616,77535599|86|32.88|1|intron REV__ENST00000294428.7_1_1:65210812-65211007:+|nuORF REV__ENST00000294428.7_1_1:65210812-65211007:+|nuORF MSMS UPN48_class_I_Rep_3 7 542.819091796875 2 542.818996 1083.62344 NaN NaN NaN NaN NaN NaN NaN 118.27 1 121.85 121.35 122.35 3.5847 0 0 0 0.53105 1 28125 28125 0 0 1 38608 1519 24439 24450 43773 43773 0.0849716631157662 RRRRRHKRK 9 Unmodified _RRRRRHKRK_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MULTI-MSMS UPN48_class_I_Rep_3 7 450.29583740234375 3 450.295966 1347.86607 0.015489 6.9746E-06 -1.0611 -0.00047782 -1.0456 -0.00047085 450.2954861577499 53.871 0.14721 57.454 57.431 57.578 3.5836 11 9 2 0 0 0 0.49573 1 11292 11292 1.0715 0.80244 1 65427 38609 1201 24440 24451 43774 43774 0.20605036107372143 RRRRRPWARRW 11 Unmodified _RRRRRPWARRW_ 0 0 0 REV__nc|ENSG00000117791|Q969Z3-2|MTARC2 REV__nc|ENSG00000117791|Q969Z3-2|MTARC2 MULTI-SECPEP UPN47_class_I_Rep_1 2 550.8795776367188 3 551.329558 1650.96685 0.53394 0.00029437 1.9872 0.0010956 2.5212 0.00139 551.3305714139894 108.19 0.14281 111.82 111.75 111.89 3.6355 18 14 2 0 0 0 22.551 1 26562 26562 0 0 1 1609900 + 38610 18641 24441 24452 43775 43775 0.16740068090234672 RRRRRRPGGA 10 Unmodified _RRRRRRPGGA_ 0 0 0 ENST00000313732.8_1_16:85029602-85045096:-|nuORF ENST00000313732.8_1_16:85029602-85045096:-|nuORF ENST00000313732.8_1_16:85029602-85045096:-|nuORF MSMS UPN47_class_I_Rep_2 3 619.3822021484375 2 619.382294 1236.75004 NaN NaN NaN NaN NaN NaN NaN 115.92 1 119.42 118.92 119.92 3.4965 0 0 0 0.53105 1 28284 28284 0 0 1 38611 6119 24442 24453 43776 43776 0.1411309253667241 RRRRRRRRHYH 11 Unmodified _RRRRRRRRHYH_ 0 0 0 ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.0082397460938 3 569.007478 1704.00061 0.048498 2.7596E-05 1.8095 0.0010296 1.858 0.0010572 569.0084513828244 13.413 0.20015 16.801 16.693 16.893 3.388 32 23 2 0 0 0 0.68583 3 320 320;323;328 0 0 1 33405 38612 6212 24443 24454 43777;43778;43779 43777 0.1767648958200425 RRRRRRRRHYH 11 Unmodified _RRRRRRRRHYH_ 0 0 0 ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 569.007478 1704.00061 -0.13779 -7.8404E-05 2.0862 0.0011871 1.9484 0.0011086 569.3429849065378 13.259 0.20754 16.716 16.643 16.85 3.457 -0.042831 0.0001367 NaN 0 41 23 2 NaN NaN NaN NaN 0 NaN NaN 0 49991 38613 6212 24443 24454 0.1767648958200425 RRRRRRRRLQL 11 Unmodified _RRRRRRRRLQL_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS UPN47_class_I_Rep_2 3 541.7532958984375 3 541.355996 1621.04616 NaN NaN NaN NaN NaN NaN NaN 116.16 1 119.65 119.15 120.15 3.4965 0 0 0 0.38417 1 28348 28348 0 0 1 + 38614 22136 24444 24455 43780 43780 0.26047715044387587 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 421.51788330078125 4 421.517628 1682.04141 0.10112 4.2624E-05 1.1364 0.00047901 1.2375 0.00052163 421.76886369677965 88.477 0.062584 88.477 88.46 88.522 0 10 5 3 0 0 0 0.68583 1 21258 21258 0 0 1 126130 + 38615 21686 24445 24456 43781 43781 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 421.6578369140625 4 421.517628 1682.04141 0.1011 4.2616E-05 0.97452 0.00041078 1.0756 0.0004534 421.5177925613237 103.77 0.055679 103.77 103.74 103.79 0 7 4 3 0 0 0 22.551 1 25313 25313 0 0 1 279150 + 38616 21686 24445 24456 43782 43782 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 562.0231323242188 3 561.687746 1682.04141 0.46549 0.00026146 1.2151 0.00068249 1.6806 0.00094395 562.0227739414498 82.815 0.025963 86.402 86.381 86.407 3.5871 6 2 3 0 0 0 0.68583 1 19789 19789 0 0 1 791860 + 38617 21686 24445 24456 43783 43783 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MSMS UPN48_class_I_Rep_1 5 561.6893310546875 3 561.687746 1682.04141 NaN NaN NaN NaN NaN NaN NaN 82.151 1 85.727 85.227 86.227 3.5753 0 0 0 0.38417 1 19612 19612 0.094841 0.011491 1 + 38618 21686 24445 24456 43784 43784 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 561.6881103515625 3 561.687746 1682.04141 0.4933 0.00027708 0.73905 0.00041511 1.2323 0.00069219 561.687863462073 107 0.038734 110.67 110.64 110.68 3.6783 10 5 3 0 0 0 0.68583 1 25280 25280 0 0 1 361710 + 38619 21686 24445 24456 43785 43785 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MSMS UPN48_class_I_Rep_2 6 561.6881713867188 3 561.687746 1682.04141 NaN NaN NaN NaN NaN NaN NaN 95.702 1 99.482 98.982 99.982 3.7804 0 0 0 0.38417 1 22742 22742 0 0 1 + 38620 21686 24445 24456 43786 43786 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 562.0230712890625 3 561.687746 1682.04141 0.44486 0.00024987 1.4738 0.0008278 1.9186 0.0010777 562.0231784780741 87.141 0.049568 90.931 90.921 90.971 3.7905 7 4 3 0 0 0 0.68583 1 20673 20673 0 0 1 203930 + 38621 21686 24445 24456 43787 43787 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 4 421.517628 1682.04141 0.10112 4.2624E-05 1.1364 0.00047901 1.2375 0.00052163 421.76886369677965 88.477 0.062584 88.477 88.46 88.522 0 0.074086 0.00027169 NaN 0 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 126130 + 38622 21686 24445 24456 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 561.687746 1682.04141 0.46549 0.00026146 1.2151 0.00068249 1.6806 0.00094395 562.0227739414498 82.815 0.025963 86.402 86.381 86.407 3.5871 0 0 NaN 0 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 791860 + 38623 21686 24445 24456 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 561.687746 1682.04141 0.4933 0.00027708 0.73905 0.00041511 1.2323 0.00069219 561.687863462073 107 0.038734 110.67 110.64 110.68 3.6783 0.0084404 -0.00075062 NaN 0 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 361710 + 38624 21686 24445 24456 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 561.687746 1682.04141 0.42438 0.00023837 1.2494 0.00070176 1.6738 0.00094013 561.6884672440132 106.97 0.018951 110.66 110.64 110.66 3.6899 -0.0084404 0.00010931 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 185090 + 38625 21686 24445 24456 0.22766830901605317 RRRRRRRWKRT 11 Unmodified _RRRRRRRWKRT_ 0 0 0 REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 4 421.517628 1682.04141 0.13485 5.6841E-05 0.93171 0.00039273 1.0666 0.00044958 421.51800458438123 84.58 0.15061 88.329 88.226 88.376 3.7494 -0.074086 -7.3416E-05 NaN 0 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3165100 + 38626 21686 24445 24456 0.22766830901605317 RRRRRRWGP 9 Unmodified _RRRRRRWGP_ 0 0 0 REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF MSMS UPN48_class_I_Rep_3 7 648.3927612304688 2 648.392662 1294.77077 NaN NaN NaN NaN NaN NaN NaN 115.35 1 118.99 118.49 119.49 3.6433 0 0 0 0.4029 1 27443 27443 0 0 1 + 38627 21637 24446 24457 43788 43788 0.13517682916358353 RRRRRRWWRR 10 Unmodified _RRRRRRWWRR_ 0 0 0 ENST00000463413.1_3_7:129710461-129710557:+|nuORF ENST00000463413.1_3_7:129710461-129710557:+|nuORF ENST00000463413.1_3_7:129710461-129710557:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.3336791992188 3 547.333303 1638.97808 NaN NaN NaN NaN NaN NaN NaN 113.36 1 116.93 116.43 117.43 3.572 0 0 0 0.53105 1 27966 27966 0 0 1 38628 6876 24447 24458 43789 43789 0.18414890184385513 RRRRRWLFWRR 11 Unmodified _RRRRRWLFWRR_ 0 0 0 REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF MSMS UPN47_class_I_Rep_3 4 582.0174560546875 3 582.017092 1743.02945 NaN NaN NaN NaN NaN NaN NaN 83.095 1 86.445 85.945 86.945 3.35 0 0 0 0.38417 1 20835 20835 0 0 1 + 38629 21944 24448 24459 43790 43790 0.18765214158406707 RRRRSRQRQRY 11 Unmodified _RRRRSRQRQRY_ 0 0 0 REV__ENSG00000175646|ENST00000312511|PRM1 REV__ENSG00000175646|ENST00000312511|PRM1 MSMS UPN46_class_I_Rep_3 1 539.9853515625 3 539.984228 1616.93085 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.79 103.29 104.29 0 0 0 0 0.38417 1 25326 25326 0.08335 0.08335 1 + 38630 20563 24449 24460 43791 43791 0.147065661227316 RRRRSRQRQRY 11 Unmodified _RRRRSRQRQRY_ 0 0 0 REV__ENSG00000175646|ENST00000312511|PRM1 REV__ENSG00000175646|ENST00000312511|PRM1 MSMS UPN48_class_I_Rep_3 7 539.9844970703125 3 539.984228 1616.93085 NaN NaN NaN NaN NaN NaN NaN 98.719 1 102.6 102.1 103.1 3.8839 0 0 0 0.38417 1 23389 23389 0 0 1 + 38631 20563 24449 24460 43792 43792 0.147065661227316 RRRRSRRMWGL 11 Unmodified _RRRRSRRMWGL_ 0 0 0 REV__ENST00000326786.4_1_1:157106130-157108182:-|nuORF REV__ENST00000326786.4_1_1:157106130-157108182:-|nuORF MSMS UPN48_class_I_Rep_3 7 510.63446044921875 3 510.632138 1528.87458 NaN NaN NaN NaN NaN NaN NaN 95.06 1 98.961 98.461 99.461 3.9016 0 0 0 0.38417 1 22531 22531 0.50596 0.051438 1 + 38632 21764 24450 24461 43793 43793 0.13130221961682764 RRRRTRRA 8 Unmodified _RRRRTRRA_ 0 0 0 REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS UPN47_class_I_Rep_1 2 564.3585205078125 2 564.358288 1126.70202 NaN NaN NaN NaN NaN NaN NaN 76.237 1 79.648 79.148 80.148 3.4107 0 0 0 0.40753 1 18856 18856 0.6015 0 1 + 38633 22692 24451 24462 43794 43794 0.14374018616649664 RRRRTRRA 8 Unmodified _RRRRTRRA_ 0 0 0 REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF REV__ENST00000507701.1_1_4:76587113-76598433:-|nuORF MSMS UPN47_class_I_Rep_2 3 564.3587036132812 2 564.358288 1126.70202 NaN NaN NaN NaN NaN NaN NaN 67.899 1 71.165 70.665 71.665 3.266 0 0 0 0.40753 1 16399 16399 0.6015 0 1 + 38634 22692 24451 24462 43795 43795 0.14374018616649664 RRRRVWPS 8 Unmodified _RRRRVWPS_ 0 0 0 REV__ENSG00000166173|ENST00000299213|LARP6 REV__ENSG00000166173|ENST00000299213|LARP6 MSMS UPN48_class_I_Rep_3 7 556.830810546875 2 556.83104 1111.64753 NaN NaN NaN NaN NaN NaN NaN 43.088 1 46.73 46.23 47.23 3.6415 0 0 0 0.40746 1 7976 7976 0.69038 0 1 + 38635 20157 24452 24463 43796 43796 0.09617006745224899 RRRRWVRLRRR 11 Unmodified _RRRRWVRLRRR_ 0 0 0 nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF nc|ENSG00000135636|O75923-15|DYSF nc|ENSG00000135636|O75923-15|DYSF MSMS UPN46_class_I_Rep_3 1 556.0252075195312 3 556.024358 1665.05124 NaN NaN NaN NaN NaN NaN NaN 101.48 1 101.48 100.98 101.98 0 0 0 0 0.38417 1 24758 24758 0 0 1 38636 2920 24453 24464 43797 43797 0.24532018906984376 RRRSEYVE 8 Unmodified _RRRSEYVE_ 0 0 0 ENSG00000123405|ENST00000435572|NFE2;chr12:54295304-54295544|151|28.28|0.75|5.24|-|ENST00000312156|NFE2,NFE2 ENSG00000123405|ENST00000435572|NFE2 ENSG00000123405|ENST00000435572|NFE2 MSMS UPN48_class_I_Rep_2 6 547.7203979492188 2 547.788704 1093.56285 NaN NaN NaN NaN NaN NaN NaN 116.87 1 120.53 120.03 121.03 3.6607 0 0 0 0.40604 1 27999 27999 2.5775 0 1 38637 583 24454 24465 43798 43798 0.019815914179389438 RRRSRILWRMR 11 Unmodified _RRRSRILWRMR_ 0 0 0 ENST00000489411.1_1_3:44544069-44552124:-|nuORF ENST00000489411.1_1_3:44544069-44552124:-|nuORF ENST00000489411.1_1_3:44544069-44552124:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 528.8185424804688 3 529.319671 1584.93718 0.28794 0.00015241 0.082561 4.3701E-05 0.3705 0.00019611 529.6537949071302 70.033 0.077103 70.033 69.999 70.076 0 11 8 2 0 0 0 22.551 1 16078 16078 0 0 1 57423 38638 7058 24455 24466 43799 43799 0.16811368029857476 RRRSRLGPRR 10 Unmodified _RRRSRLGPRR_ 0 0 0 ENST00000393312.5_1_7:127031627-127032354:-|nuORF;ENST00000393313.5_1_7:127031641-127032354:-|nuORF ENST00000393312.5_1_7:127031627-127032354:-|nuORF ENST00000393312.5_1_7:127031627-127032354:-|nuORF MSMS UPN48_class_I_Rep_2 6 437.2760314941406 3 437.27646 1308.80755 NaN NaN NaN NaN NaN NaN NaN 64.919 1 68.399 67.899 68.899 3.4792 0 0 0 0.53105 1 14717 14717 1.9064 0 1 38639 6533 24456 24467 43800 43800 0.1654993474226103 RRRSRRHRKR 10 Unmodified _RRRSRRHRKR_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MSMS UPN48_class_I_Rep_1 5 488.6407775878906 3 488.642025 1462.90425 NaN NaN NaN NaN NaN NaN NaN 61.477 1 64.945 64.445 65.445 3.4678 0 0 0 0.53105 1 13680 13680 0.15932 0 1 38640 4301 24457 24468 43801 43801 0.19130922022031882 RRRSRRHRKR 10 Unmodified _RRRSRRHRKR_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MSMS UPN48_class_I_Rep_3 7 488.64129638671875 3 488.642025 1462.90425 NaN NaN NaN NaN NaN NaN NaN 62.638 1 66.149 65.649 66.649 3.5104 0 0 0 0.53105 1 13939 13939 0.12286 0 1 38641 4301 24457 24468 43802 43802 0.19130922022031882 RRRSRRHRKR 10 Unmodified _RRRSRRHRKR_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MSMS UPN48_class_I_Rep_3 7 488.64111328125 3 488.642025 1462.90425 NaN NaN NaN NaN NaN NaN NaN 62.893 1 66.402 65.902 66.902 3.5091 0 0 0 0.53105 1 14016 14016 0.15932 0 1 38642 4301 24457 24468 43803 43803 0.19130922022031882 RRRTEKFE 8 Unmodified _RRRTEKFE_ 0 0 0 REV__nc|ENSG00000082482|O95069-2|KCNK2 REV__nc|ENSG00000082482|O95069-2|KCNK2 MSMS UPN48_class_I_Rep_2 6 561.3116455078125 2 561.312346 1120.61014 NaN NaN NaN NaN NaN NaN NaN 62.858 1 66.332 65.832 66.832 3.4738 0 0 0 0.40753 1 14084 14084 0.6015 0 1 + 38643 17923 24458 24469 43804 43804 0.05465870688931318 RRRTKKLIT 9 Unmodified _RRRTKKLIT_ 0 0 0 REV__L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|10|1|sense REV__L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|10|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 586.1888427734375 2 586.390931 1170.76731 0.50625 0.00029686 2.1031 0.0012332 2.6094 0.0015301 586.3919863731193 44.729 0.047691 44.729 44.7 44.747 0 6 2 3 0 0 0 0.12535 1 9029 9029 0 0 1 924380 + 38644 29455 24459 24470 43805 43805 0.18875575299125558 RRRTKRVVK 9 Unmodified _RRRTKRVVK_ 0 0 0 HAL1_dup629|chr1:91007513-91008422:-|2.910653389443433|0.1033109854967911|4.82|151.0|34|3|sense HAL1_dup629|chr1:91007513-91008422:-|2.910653389443433|0.1033109854967911|4.82|151.0|34|3|sense HAL1_dup629|chr1:91007513-91008422:-|2.910653389443433|0.1033109854967911|4.82|151.0|34|3|sense MSMS UPN48_class_I_Rep_2 6 600.0494384765625 2 599.901997 1197.78944 NaN NaN NaN NaN NaN NaN NaN 40.219 1 43.96 43.46 44.46 3.7413 0 0 0 0.40098 1 7219 7219 0.45834 0 1 38645 7901 24460 24471 43806 43806 0.19845799767540484 RRRTLYIQ 8 Unmodified _RRRTLYIQ_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MSMS UPN48_class_I_Rep_3 7 553.3330078125 2 553.333082 1104.65161 NaN NaN NaN NaN NaN NaN NaN 88.028 1 91.839 91.339 92.339 3.8104 0 0 0 0.40746 1 20892 20892 0.69038 0 1 38646 5160 24461 24472 43807 43807 0.10347051448275124 RRRTPRWL 8 Unmodified _RRRTPRWL_ 0 0 0 REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 570.8477783203125 2 570.84669 1139.67883 0.060692 3.4646E-05 2.5826 0.0014743 2.6433 0.0015089 570.8478750617444 23.021 0.072018 23.021 23.005 23.077 0 5 3 2 0 0 0 0.82752 1 2831 2831 0.69038 0.16561 1 91497 + 38647 22864 24462 24473 43808 43808 0.11457579779312255 RRRTQKAVL 9 Unmodified _RRRTQKAVL_ 0 0 0 L1MB7_dup5177|chr4:1732705-1733285:-|1.8936372982631011|0.1209358499913945|3.97|151.0|11|2|sense L1MB7_dup5177|chr4:1732705-1733285:-|1.8936372982631011|0.1209358499913945|3.97|151.0|11|2|sense L1MB7_dup5177|chr4:1732705-1733285:-|1.8936372982631011|0.1209358499913945|3.97|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 564.3592529296875 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 71.062 1 74.58 74.08 75.08 3.5185 0 0 0 0.40038 1 16475 16475 0.6015 0 1 38648 10849 24463 24474 43809 43809 0.14642429230934795 RRRVMRCI 8 Unmodified _RRRVMRCI_ 0 0 0 REV__nc|ENSG00000141858|Q6SPF0|SAMD1 REV__nc|ENSG00000141858|Q6SPF0|SAMD1 MSMS UPN46_class_I_Rep_3 1 545.31640625 2 545.315854 1088.61716 NaN NaN NaN NaN NaN NaN NaN 97.089 1 97.089 96.589 97.589 0 0 0 0 0.40746 1 23614 23614 0.69038 0 1 + 38649 31999 24464 24475 43810 43810 0.07639188764164828 RRRVNHTL 8 Unmodified _RRRVNHTL_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MSMS UPN48_class_I_Rep_3 7 526.316162109375 2 526.315223 1050.61589 NaN NaN NaN NaN NaN NaN NaN 71.604 1 75.13 74.63 75.63 3.5266 0 0 0 0.40625 1 16640 16640 2.3027 0.24298 1 38650 1169 24465 24476 43811 43811 0.09261013991272193 RRRVVKVI 8 Unmodified _RRRVVKVI_ 0 0 0 REV__ENSG00000112773|ENST00000320172|TENT5A REV__ENSG00000112773|ENST00000320172|TENT5A MULTI-SECPEP UPN46_class_I_Rep_3 1 512.7515258789062 2 513.35636 1024.69817 -0.10059 -5.1639E-05 -3.1044 -0.0015937 -3.205 -0.0016453 513.3532786386911 22.714 0.1938 22.714 22.637 22.831 0 30 21 2 0 0 0 0.72333 1 2737 2737 0.69038 0.69038 1 36079 + 38651 18490 24466 24477 43812 43812 0.18680536070223752 RRRWLFMV 8 Unmodified _RRRWLFMV_ 0 0 0 REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|234|1|anti-sense REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|234|1|anti-sense MSMS UPN46_class_I_Rep_3 1 582.3353881835938 2 582.33457 1162.65459 NaN NaN NaN NaN NaN NaN NaN 89.959 1 89.959 89.459 90.459 0 0 0 0 0.40738 1 21670 21670 0.79363 0 1 + 38652 29955 24467 24478 43813 43813 0.07976603301426621 RRRWRRRPG 9 Unmodified _RRRWRRRPG_ 0 0 0 REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 432.885009765625 3 432.597534 1294.77077 0.093874 4.061E-05 -0.74549 -0.0003225 -0.65161 -0.00028189 432.59705453432275 101.1 0.11887 104.84 104.76 104.88 3.7416 22 15 2 0 0 0 0.12516 1 23994 23994 1.0715 0 1 78309 + 38653 22335 24468 24479 43814 43814 0.13517682916335616 RRRWRRRPG 9 Unmodified _RRRWRRRPG_ 0 0 0 REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 432.597534 1294.77077 0.13852 5.9923E-05 -0.93154 -0.00040298 -0.79302 -0.00034306 432.597157988139 100.92 0.11476 104.71 104.68 104.79 3.7942 -0.077191 -0.00054384 NaN 1.0715 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 102670 + 38654 22335 24468 24479 0.13517682916335616 RRRWRRRPG 9 Unmodified _RRRWRRRPG_ 0 0 0 REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 432.597534 1294.77077 -0.21353 -9.2373E-05 -0.016124 -6.9752E-06 -0.22965 -9.9348E-05 432.5973837165151 101.06 0.1289 104.57 104.46 104.59 3.5063 -0.22519 0.00064417 NaN 1.0715 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 76725 + 38655 22335 24468 24479 0.13517682916335616 RRRWRRRPG 9 Unmodified _RRRWRRRPG_ 0 0 0 REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 432.597534 1294.77077 0.13261 5.7366E-05 -0.66095 -0.00028593 -0.52835 -0.00022856 432.5972106837522 101.06 0.2626 104.87 104.75 105.01 3.8153 0.080556 -0.00019269 NaN 1.0715 44 35 2 NaN NaN NaN NaN 0 NaN NaN 0 133200 + 38656 22335 24468 24479 0.13517682916335616 RRRWYAWKERL 11 Unmodified _RRRWYAWKERL_ 0 0 0 REV__nc|ENSG00000003096|Q9P2N7-5|KLHL13 REV__nc|ENSG00000003096|Q9P2N7-5|KLHL13 MSMS UPN48_class_I_Rep_3 7 540.7918090820312 3 540.639176 1618.8957 NaN NaN NaN NaN NaN NaN NaN 12.061 1 15.592 15.092 16.092 3.531 0 0 0 0.38417 1 12 12 0 0 1 + 38657 31929 24469 24480 43815 43815 0.11100510542178199 RRRYFLVY 8 Unmodified _RRRYFLVY_ 0 0 0 REV__ENST00000483667.1_1_3:49147547-49148163:-|nuORF REV__ENST00000483667.1_1_3:49147547-49148163:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.8357543945312 2 586.838 1171.66145 NaN NaN NaN NaN NaN NaN NaN 58.143 1 61.63 61.13 62.13 3.487 0 0 0 0.40604 1 12660 12660 2.5775 0.27475 1 + 38658 20433 24470 24481 43816 43816 0.08248239453655515 RRRYFLVY 8 Unmodified _RRRYFLVY_ 0 0 0 REV__ENST00000483667.1_1_3:49147547-49148163:-|nuORF REV__ENST00000483667.1_1_3:49147547-49148163:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.8355102539062 2 586.838 1171.66145 NaN NaN NaN NaN NaN NaN NaN 58.254 1 61.741 61.241 62.241 3.487 0 0 0 0.40746 1 12694 12694 0.69038 0.088878 1 + 38659 20433 24470 24481 43817 43817 0.08248239453655515 RRSENIKKF 9 Unmodified _RRSENIKKF_ 0 0 0 REV__L1PA5_dup106|chr1:50904887-50911009:-|7.349801029516273|0.0650771704694023|6.82|151.0|33|1|sense REV__L1PA5_dup106|chr1:50904887-50911009:-|7.349801029516273|0.0650771704694023|6.82|151.0|33|1|sense MSMS UPN48_class_I_Rep_2 6 589.3436889648438 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 81.921 1 85.59 85.09 86.09 3.669 0 0 0 0.39518 1 19454 19454 1.8442 0 1 + 38660 29710 24471 24482 43818 43818 0.09147016757128767 RRSFIKIKKK 10 Unmodified _RRSFIKIKKK_ 0 0 0 REV__L1MEd_dup15136|chr11:65199156-65199938:-|2.0252605849498324|0.1255693045597307|4.01|151.0|25|3|sense REV__L1MEd_dup15136|chr11:65199156-65199938:-|2.0252605849498324|0.1255693045597307|4.01|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 435.2819519042969 3 435.294346 1302.86121 NaN NaN NaN NaN NaN NaN NaN 59.099 1 62.516 62.016 63.016 3.4171 0 0 0 0.53105 1 13697 13697 0.15932 0 1 + 38661 28533 24472 24483 43819 43819 0.22189294401368898 RRSGVLVW 8 Unmodified _RRSGVLVW_ 0 0 0 REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 486.7899169921875 2 486.790518 971.566484 0.18849 9.1754E-05 -0.50531 -0.00024598 -0.31682 -0.00015422 486.7903080704948 35.107 0.67238 38.621 38.372 39.045 3.5144 104 69 2 0 0 0 0.82752 1 5696 5696 4.756 2.1785 1 125260 + 38662 22961 24473 24484 43820 43820 0.07956305982463618 RRSGVLVW 8 Unmodified _RRSGVLVW_ 0 0 0 REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 486.79107666015625 2 486.790518 971.566484 0.23349 0.00011366 -0.83245 -0.00040523 -0.59896 -0.00029157 486.78998407785207 35.097 1.0992 38.771 38.301 39.4 3.6735 136 105 2 0 0 0 0.82752 1 5754 5754 5.2307 0 1 96842 + 38663 22961 24473 24484 43821 43821 0.07956305982463618 RRSKKRRRRL 10 Unmodified _RRSKKRRRRL_ 0 0 0 ENST00000421536.5_1_2:187351098-187359978:+|nuORF ENST00000421536.5_1_2:187351098-187359978:+|nuORF ENST00000421536.5_1_2:187351098-187359978:+|nuORF MSMS UPN46_class_I_Rep_3 1 471.3164978027344 3 471.315026 1410.92325 NaN NaN NaN NaN NaN NaN NaN 81.214 1 81.214 80.714 81.714 0 0 0 0 0.53105 1 19170 19170 0.15932 0 1 38664 6685 24474 24485 43822 43822 0.23422458593108786 RRSMKRRRRRR 11 Unmodified _RRSMKRRRRRR_ 0 0 0 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L MULTI-SECPEP UPN47_class_I_Rep_3 4 538.1614379882812 3 538.669586 1612.98693 -0.46237 -0.00024907 1.7934 0.00096604 1.331 0.00071697 538.6705046577491 12.992 0.03884 16.366 16.344 16.382 3.3734 7 4 2 0 0 0 22.551 1 203 203 0 0 1 17315 38665 5748 24475 24486 43823 43823 0.20495495758541438 RRSRILCSLL 10 Unmodified _RRSRILCSLL_ 0 0 0 REV__L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|150|2|anti-sense REV__L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|150|2|anti-sense MSMS UPN46_class_I_Rep_3 1 406.2486877441406 3 406.248408 1215.72339 NaN NaN NaN NaN NaN NaN NaN 88.485 1 88.485 87.985 88.985 0 0 0 0 0.53105 1 21251 21251 0.77653 0.078866 1 + 38666 27462 24476 24487 43824 43824 0.12416222810497857 RRSRLAVH 8 Unmodified _RRSRLAVH_ 0 0 0 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS UPN47_class_I_Rep_1 2 497.8035888671875 2 497.804491 993.59443 NaN NaN NaN NaN NaN NaN NaN 35.378 1 39.054 38.554 39.554 3.6762 0 0 0 0.40738 1 6481 6481 0.79363 0 1 + 38667 19132 24477 24488 43825 43825 0.09737628962568579 RRSRSFERR 9 Unmodified _RRSRSFERR_ 0 0 0 REV__ENST00000393218.6_1_14:93199069-93214951:-|nuORF REV__ENST00000393218.6_1_14:93199069-93214951:-|nuORF MSMS UPN46_class_I_Rep_3 1 625.1406860351562 2 625.352868 1248.69118 NaN NaN NaN NaN NaN NaN NaN 76.609 1 76.609 76.109 77.109 0 0 0 0 0.39518 1 17879 17879 1.8442 0.36234 1 + 38668 22096 24478 24489 43826 43826 0.0767857145169728 RRSRWIRRSKA 11 Unmodified _RRSRWIRRSKA_ 0 0 0 HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 491.3003234863281 3 491.299153 1470.87563 0.29714 0.00014598 1.5329 0.00075314 1.8301 0.00089912 491.299789728295 107.43 0.071686 107.43 107.39 107.46 0 16 10 2 0 0 0 0.66092 1 26198 26198 2.2527 0.92309 1 32333000 38669 8441 24479 24490 43827 43827 0.15902759602249716 RRSRWIRRSKA 11 Unmodified _RRSRWIRRSKA_ 0 0 0 HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.6337890625 3 491.299153 1470.87563 0.2699 0.0001326 0.15413 7.5722E-05 0.42403 0.00020833 491.2991209212414 106 0.89292 109.71 109.39 110.28 3.7088 344 128 4 0 0 0 0.67462 1 25980 25980 1.0136 1.0136 1 2970300 38670 8441 24479 24490 43828 43828 0.15902759602249716 RRSRWIRRSKA 11 Unmodified _RRSRWIRRSKA_ 0 0 0 HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 491.2989807128906 3 491.299153 1470.87563 0.26939 0.00013235 -0.18934 -9.302E-05 0.080058 3.9332E-05 491.2989050000794 106.91 0.11889 110.58 110.5 110.62 3.6724 23 16 2 0 0 0 22.551 1 26203 26203 0.32927 0.23443 1 136530 38671 8441 24479 24490 43829 43829 0.15902759602249716 RRSRWIRRSKA 11 Unmodified _RRSRWIRRSKA_ 0 0 0 HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense HUERS-P2-int_dup51|chr3:113338561-113340377:-|1.0226132202001097|0.1311608911158274|2.96|151.0|94|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 491.29925537109375 3 491.299153 1470.87563 0.48781 0.00023966 -0.043919 -2.1577E-05 0.44389 0.00021808 491.299026763051 106.01 0.87233 109.55 109.26 110.13 3.5345 389 130 4 0 0 0 0.67462 1 25687 25687 1.0136 1.0136 1 2944700 38672 8441 24479 24490 43830 43830 0.15902759602249716 RRSRYVRLR 9 Unmodified _RRSRYVRLR_ 0 0 0 nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 MSMS UPN46_class_I_Rep_3 1 631.8433227539062 2 631.389254 1260.76395 NaN NaN NaN NaN NaN NaN NaN 69.833 1 69.833 69.333 70.333 0 0 0 0 0.4007 1 16021 16021 0.52476 0 1 38673 5700 24480 24491 43831 43831 0.14400325245105705 RRSVRTRT 8 Unmodified _RRSVRTRT_ 0 0 0 ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF ENSG00000110066|ENST00000304363|KMT5B ENSG00000110066|ENST00000304363|KMT5B MSMS UPN48_class_I_Rep_1 5 516.3142700195312 2 516.312681 1030.61081 NaN NaN NaN NaN NaN NaN NaN 93.577 1 97.198 96.698 97.698 3.6208 0 0 0 0.40625 1 22491 22491 2.3027 0 1 38674 1926 24481 24492 43832 43832 0.0967271012866604 RRSVSKPL 8 Unmodified _RRSVSKPL_ 0 0 0 REV__L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|54|3|anti-sense REV__L1PB1_dup10075|chr12:51147568-51148420:+|3.112719534346662|0.0257135287016369|6.92|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.8023986816406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 30.691 1 34.173 33.673 34.673 3.4821 0 0 0 0.40604 1 5094 5094 2.5775 0 1 + 38675 30291 24482 24493 43833 43833 0.10392288636899139 RRSWLAWH 8 Unmodified _RRSWLAWH_ 0 0 0 HUERS-P1-int_dup172|chr6:42059846-42062529:-|2.269667664698715|0.2503454450452778|3.18|151.0|139|2|anti-sense HUERS-P1-int_dup172|chr6:42059846-42062529:-|2.269667664698715|0.2503454450452778|3.18|151.0|139|2|anti-sense HUERS-P1-int_dup172|chr6:42059846-42062529:-|2.269667664698715|0.2503454450452778|3.18|151.0|139|2|anti-sense MSMS UPN48_class_I_Rep_3 7 556.296630859375 2 556.299042 1110.58353 NaN NaN NaN NaN NaN NaN NaN 31.15 1 34.865 34.365 35.365 3.7146 0 0 0 0.40738 1 4574 4574 0.79363 0 1 38676 8439 24483 24494 43834 43834 0.03266226588243626 RRSYPKRK 8 Unmodified _RRSYPKRK_ 0 0 0 REV__ENST00000380834.6_1_2:25042774-25043173:+|nuORF REV__ENST00000380834.6_1_2:25042774-25043173:+|nuORF MSMS UPN47_class_I_Rep_2 3 545.8336791992188 2 545.833249 1089.65194 NaN NaN NaN NaN NaN NaN NaN 89.464 1 92.917 92.417 93.417 3.4525 0 0 0 0.40746 1 22227 22227 0.69038 0.088878 1 + 38677 22057 24484 24495 43835 43835 0.11070471168113727 RRTALVIL 8 Unmodified _RRTALVIL_ 0 0 0 REV__AluJr_dup9047|chr2:70219504-70219651:-|2.013557214343165|0.29777243561721|2.76|151.0|3|2|sense REV__AluJr_dup9047|chr2:70219504-70219651:-|2.013557214343165|0.29777243561721|2.76|151.0|3|2|sense MSMS UPN46_class_I_Rep_3 1 471.3064880371094 2 471.316369 940.618185 NaN NaN NaN NaN NaN NaN NaN 79.973 1 79.973 79.473 80.473 0 0 0 0 0.40738 1 18817 18817 0.79363 0 1 + 38678 17068 24485 24496 43836 43836 0.14550049676358867 RRTHHFLCIP 10 Unmodified _RRTHHFLCIP_ 0 0 0 L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|3|1|sense L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|3|1|sense L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 640.3457641601562 2 640.345666 1278.67678 NaN NaN NaN NaN NaN NaN NaN 103.14 1 106.75 106.25 107.25 3.6164 0 0 0 0.53105 1 24864 24864 0.45834 0 1 38679 11423 24486 24497 43837 43837 0.04858782979204079 RRTILTFF 8 Unmodified _RRTILTFF_ 0 0 0 REV__HERVK9-int_dup18|chr1:54630776-54633691:+|3.1073298934328264|0.3900889070619937|2.99|151.0|3|1|sense REV__HERVK9-int_dup18|chr1:54630776-54633691:+|3.1073298934328264|0.3900889070619937|2.99|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 527.3126220703125 2 527.313826 1052.6131 NaN NaN NaN NaN NaN NaN NaN 33.563 1 37.243 36.743 37.743 3.6797 0 0 0 0.40604 1 5234 5234 2.5775 0 1 + 38680 23822 24487 24498 43838 43838 0.08889745813735317 RRTKQMKRY 9 Unmodified _RRTKQMKRY_ 0 0 0 L1MC1_dup9223|chr11:68484934-68485689:-|1.827685505890402|0.0191644007229577|6.58|151.0|21|3|sense L1MC1_dup9223|chr11:68484934-68485689:-|1.827685505890402|0.0191644007229577|6.58|151.0|21|3|sense L1MC1_dup9223|chr11:68484934-68485689:-|1.827685505890402|0.0191644007229577|6.58|151.0|21|3|sense MSMS UPN46_class_I_Rep_3 1 633.86572265625 2 633.864223 1265.71389 NaN NaN NaN NaN NaN NaN NaN 66.274 1 66.274 65.774 66.774 0 0 0 0 0.39518 1 15028 15028 1.8442 0.77278 1 38681 11211 24488 24499 43839 43839 0.0916645452496141 RRTKSLWC 8 Unmodified _RRTKSLWC_ 0 0 0 REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|9|1|sense REV__MER52D_dup136|chr3:33025676-33027513:+|1.0471594461984797|0.1383840775391421|2.92|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 525.2880249023438 2 525.287285 1048.56002 NaN NaN NaN NaN NaN NaN NaN 55.072 1 58.25 57.75 58.75 3.1779 0 0 0 0.40738 1 12556 12556 0.79363 0 1 + 38682 31435 24489 24500 43840 43840 0.037680447594539146 RRTKVAFF 8 Unmodified _RRTKVAFF_ 0 0 0 REV__nc|ENSG00000197822|Q16625-4|OCLN REV__nc|ENSG00000197822|Q16625-4|OCLN MSMS UPN48_class_I_Rep_2 6 512.8043212890625 2 512.806168 1023.59778 NaN NaN NaN NaN NaN NaN NaN 73.816 1 77.394 76.894 77.894 3.5779 0 0 0 0.40581 1 17346 17346 2.8892 0 1 + 38683 21099 24490 24501 43841 43841 0.08692879016552979 RRTNGIVP 8 Unmodified _RRTNGIVP_ 0 0 0 MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|26|2|anti-sense MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|26|2|anti-sense MLT2B1_dup3973|chr17:29788121-29788586:+|3.688315149977127|0.0246382095868572|7.23|151.0|26|2|anti-sense MSMS UPN48_class_I_Rep_2 6 456.7742919921875 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 59.341 1 62.828 62.328 63.328 3.4868 0 0 0 0.40659 1 13008 13008 1.8442 1.0506 1 38684 16505 24491 24502 43842 43842 0.07079429085763422 RRTPMFYY 8 Unmodified _RRTPMFYY_ 0 0 0 REV__L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|9|2|sense REV__L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 567.330078125 2 567.281669 1132.54878 NaN NaN NaN NaN NaN NaN NaN 80.67 1 84.158 83.658 84.658 3.4874 0 0 0 0.40738 1 20103 20103 0.79363 0 1 + 38685 28075 24492 24503 43843 43843 -0.012187773347022812 RRTPTVHLTP 10 Unmodified _RRTPTVHLTP_ 0 0 0 ENSG00000105738.11,SIPA1L3,chr19,+,I20.1,38164907,38173625|23|5.21|2|intron ENSG00000105738.11,SIPA1L3,chr19,+,I20.1,38164907,38173625|23|5.21|2|intron ENSG00000105738.11,SIPA1L3,chr19,+,I20.1,38164907,38173625|23|5.21|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 589.845458984375 2 589.343646 1176.67274 0.54394 0.00032057 -0.95317 -0.00056174 -0.40923 -0.00024118 589.3429576358793 86.703 0.28903 86.703 86.494 86.783 0 50 31 2 0 0 0 0.56333 1 20711 20711 1.4819 0.15237 1 743590 38686 1757 24493 24504 43844 43844 0.09147016757128767 RRTRGFTYHC 10 Unmodified _RRTRGFTYHC_ 0 0 0 REV__L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|19|2|sense REV__L1MC1_dup2832|chr3:177166757-177167647:+|3.940133852503428|0.0172421239063671|7.84|151.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 432.885009765625 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 101.09 1 104.83 104.33 105.33 3.7417 0 0 0 0.53105 1 23994 23994 0.56317 0.1965 1 + 38687 26543 24494 24505 43845 43845 -0.005432819228872177 RRTRTLKY 8 Unmodified _RRTRTLKY_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|1|intron;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|3|intron;ENSG00000146463.12,ZMYM4,chr1,+,I27.1,35405469,35408007|54|9.91|9|intron nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN46_class_I_Rep_3 1 547.3137817382812 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 115.57 1 115.57 115.07 116.07 0 0 0 0 0.40753 1 28587 28587 0.6015 0.076735 1 38688 3438 24495 24506 43846 43846 0.10899051448268438 RRTSKWKKSVF 11 Unmodified _RRTSKWKKSVF_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MSMS UPN48_class_I_Rep_3 7 474.9508361816406 3 474.949127 1421.82555 NaN NaN NaN NaN NaN NaN NaN 102.64 1 106.42 105.92 106.92 3.776 0 0 0 0.38417 1 24252 24252 2.2527 0.92309 1 38689 4738 24496 24507 43847 43847 0.1315121215372983 RRTSLSPP 8 Unmodified _RRTSLSPP_ 0 0 0 L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|156|2|anti-sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|156|2|anti-sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|156|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.26434326171875 2 457.264333 912.514114 0.16319 7.4623E-05 0.010421 4.765E-06 0.17361 7.9388E-05 457.2641985747419 72.45 1.6171 76.015 75.426 77.043 3.5645 245 162 2 0 0 0 0.82752 1 17212 17212 2.5775 2.5775 1 245260 38690 10176 24497 24508 43848 43848 0.054357228488470355 RRTVGKKQPK 10 Unmodified _RRTVGKKQPK_ 0 0 0 nc|ENSG00000072364|Q9UHB7-2|AFF4;ENSG00000072364|ENST00000265343|AFF4 nc|ENSG00000072364|Q9UHB7-2|AFF4 nc|ENSG00000072364|Q9UHB7-2|AFF4 MULTI-MSMS UPN47_class_I_Rep_1 2 599.379638671875 2 599.380563 1196.74657 0.51945 0.00031135 -0.77191 -0.00046267 -0.25247 -0.00015132 599.8814122069671 95.42 0.3943 99.185 99.005 99.399 3.7648 67 51 2 0 0 0 0.56309 1 23691 23691 1.6526 0 1 256030 38691 1100 24498 24509 43849 43849 0.15606984919440947 RRVAGGVP 8 Unmodified _RRVAGGVP_ 0 0 0 REV__ENST00000426158.1_3_7:89841229-89854412:+|nuORF REV__ENST00000426158.1_3_7:89841229-89854412:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.2486267089844 2 406.248486 810.48242 0.023412 9.511E-06 0.45564 0.0001851 0.47906 0.00019462 406.24864647805435 82.341 0.11519 85.853 85.82 85.935 3.5122 20 12 2 0 0 0 0.82752 1 20583 20583 0.79363 0 1 51723 + 38692 22264 24499 24510 43850 43850 0.06959774885569914 RRVDLKTLS 9 Unmodified _RRVDLKTLS_ 0 0 0 MER11C_dup435|chr8:12536984-12538042:-|2.0497642640260354|0.2373709459909125|3.11|150.0|20|2|sense;MER11C_dup429|chr8:8133613-8134678:+|1.8804921869433255|0.1232958185896247|3.93|151.0|7|1|sense;MER11C_dup427|chr8:7158776-7159835:-|1.2728492348266824|0.1924607169047185|2.73|151.0|31|3|sense MER11C_dup435|chr8:12536984-12538042:-|2.0497642640260354|0.2373709459909125|3.11|150.0|20|2|sense MER11C_dup435|chr8:12536984-12538042:-|2.0497642640260354|0.2373709459909125|3.11|150.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 544.3331909179688 2 544.332747 1086.65094 NaN NaN NaN NaN NaN NaN NaN 86.786 1 90.399 89.899 90.899 3.613 0 0 0 0.39518 1 20794 20794 1.8442 0 1 38693 15796 24500 24511 43851 43851 0.11108212008571172 RRVFQALARI 10 Unmodified _RRVFQALARI_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MSMS UPN48_class_I_Rep_2 6 615.39501953125 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 85.332 1 89.038 88.538 89.538 3.7058 0 0 0 0.53105 1 20290 20290 1.4819 0 1 38694 2086 24501 24512 43852 43852 0.14643288782076525 RRVGKFIKTF 10 Unmodified _RRVGKFIKTF_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN47_class_I_Rep_2 3 626.8901977539062 2 626.387857 1250.76116 0.63462 0.00039752 -0.61533 -0.00038544 0.019283 1.2079E-05 626.889175283031 105.88 0.43265 109.42 109.27 109.71 3.5345 86 64 2 0 0 0 0.56078 2 25664 25664;25694 3.2813 0.54611 1 1214200 + 38695 18060 24502 24513 43853;43854 43853 0.14581057067607617 RRVGKFIKTF 10 Unmodified _RRVGKFIKTF_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN48_class_I_Rep_3 7 626.8897094726562 2 626.387857 1250.76116 0.59986 0.00037575 -0.45988 -0.00028806 0.13998 8.7684E-05 626.3876986832004 105.15 0.53945 108.86 108.82 109.36 3.702 128 78 2 0 0 0 0.56078 1 24882 24882 3.2813 0.54611 1 1879000 + 38696 18060 24502 24513 43855 43855 0.14581057067607617 RRVGRISK 8 Unmodified _RRVGRISK_ 0 0 0 REV__ENST00000317961.8_2_Y:21906580-21906733:-|nuORF REV__ENST00000317961.8_2_Y:21906580-21906733:-|nuORF MSMS UPN48_class_I_Rep_2 6 486.2853698730469 2 486.314692 970.614831 NaN NaN NaN NaN NaN NaN NaN 111.62 1 115.28 114.78 115.78 3.6666 0 0 0 0.40746 1 26552 26552 0.69038 0 1 + 38697 21725 24503 24514 43856 43856 0.12834799622362425 RRVLFTGSPA 10 Unmodified _RRVLFTGSPA_ 0 0 0 REV__ENST00000533685.1_1_11:64900480-64900579:-|nuORF REV__ENST00000533685.1_1_11:64900480-64900579:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.3197631835938 2 552.31964 1102.62473 NaN NaN NaN NaN NaN NaN NaN 13.64 1 17.028 16.528 17.528 3.388 0 0 0 0.53105 1 374 374 0 0 1 + 38698 22875 24504 24515 43857 43857 0.0775194283712608 RRVLGGPG 8 Unmodified _RRVLGGPG_ 0 0 0 REV__ENST00000591369.5_1_17:76419989-76422610:-|nuORF REV__ENST00000591369.5_1_17:76419989-76422610:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 406.3528137207031 2 406.248486 810.48242 -0.14468 -5.8777E-05 1.2165 0.00049421 1.0718 0.00043543 406.24903010302097 107.01 0.10561 110.64 110.55 110.66 3.6299 15 13 2 0 0 0 0.72333 1 25766 25766 0.79363 0 1 59367 + 38699 23169 24505 24516 43858 43858 0.06959774885581282 RRVLKTKLTV 10 Unmodified _RRVLKTKLTV_ 0 0 0 REV__Charlie1_dup978|chr8:108224812-108225978:+|2.313596283916575|0.1060085495857573|4.45|151.0|42|1|anti-sense REV__Charlie1_dup978|chr8:108224812-108225978:+|2.313596283916575|0.1060085495857573|4.45|151.0|42|1|anti-sense MSMS UPN47_class_I_Rep_1 2 405.2733459472656 3 405.274952 1212.80303 NaN NaN NaN NaN NaN NaN NaN 44.689 1 48.389 47.889 48.889 3.6999 0 0 0 0.53105 1 9315 9315 0.69767 0.24315 1 + 38700 17277 24506 24517 43859 43859 0.20513612756121802 RRVLKTKLTV 10 Unmodified _RRVLKTKLTV_ 0 0 0 REV__Charlie1_dup978|chr8:108224812-108225978:+|2.313596283916575|0.1060085495857573|4.45|151.0|42|1|anti-sense REV__Charlie1_dup978|chr8:108224812-108225978:+|2.313596283916575|0.1060085495857573|4.45|151.0|42|1|anti-sense MSMS UPN48_class_I_Rep_3 7 405.2732849121094 3 405.274952 1212.80303 NaN NaN NaN NaN NaN NaN NaN 77.002 1 80.604 80.104 81.104 3.6016 0 0 0 0.53105 1 18162 18162 0.69767 0.24315 1 + 38701 17277 24506 24517 43860 43860 0.20513612756121802 RRVLLMTV 8 Unmodified _RRVLLMTV_ 0 0 0 HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|334|3|anti-sense;HERVK9-int_dup367|chr9:131683650-131685118:+|1.2107702984255329|0.1138562023128146|3.41|149.0|44|1|anti-sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|334|3|anti-sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|334|3|anti-sense MSMS UPN47_class_I_Rep_2 3 494.3108825683594 2 494.310229 986.605906 NaN NaN NaN NaN NaN NaN NaN 65.393 1 68.648 68.148 69.148 3.2556 0 0 0 0.40746 1 15642 15642 0.69038 0 1 38702 8309 24507 24518 43861 43861 0.11206689941695913 RRVMFLTY 8 Unmodified _RRVMFLTY_ 0 0 0 REV__L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|11|2|sense REV__L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 543.2985229492188 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 101.99 1 101.99 101.49 102.49 0 0 0 0 0.40625 1 24886 24886 2.3027 0.24298 1 + 38703 27793 24508 24519 43862 43862 0.04626099562028685 RRVMFLTY 8 Unmodified _RRVMFLTY_ 0 0 0 REV__L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|11|2|sense REV__L1ME1_dup7345|chr3:195904734-195905198:+|2.5126153190921947|0.1445947490860384|4.12|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 543.2982177734375 2 543.299862 1084.58517 NaN NaN NaN NaN NaN NaN NaN 24.413 1 28.053 27.553 28.553 3.6397 0 0 0 0.40604 1 2828 2828 2.5775 0.27475 1 + 38704 27793 24508 24519 43863 43863 0.04626099562028685 RRVNVTSV 8 Unmodified _RRVNVTSV_ 0 0 0 REV__ENSG00000083642|ENST00000315596|PDS5B REV__ENSG00000083642|ENST00000315596|PDS5B MULTI-MSMS UPN47_class_I_Rep_1 2 465.7777404785156 2 465.777608 929.540663 0.16396 7.637E-05 0.61558 0.00028672 0.77955 0.00036309 465.77787342924944 86.174 1.0032 89.789 88.971 89.974 3.6153 251 125 3 0 0 0 0.82752 2 21366 21366;21426 16.942 4.4107 1 1431500 + 38705 17935 24509 24520 43864;43865 43864 0.07307411740180214 RRVNVTSV 8 Unmodified _RRVNVTSV_ 0 0 0 REV__ENSG00000083642|ENST00000315596|PDS5B REV__ENSG00000083642|ENST00000315596|PDS5B MULTI-MSMS UPN47_class_I_Rep_2 3 465.77801513671875 2 465.777608 929.540663 0.12797 5.9608E-05 0.55111 0.00025669 0.67908 0.0003163 465.77783133263586 85.842 0.41828 89.275 89.235 89.653 3.4329 121 55 3 0 0 0 0.82752 1 21351 21351 15.847 3.3156 1 306510 + 38706 17935 24509 24520 43866 43866 0.07307411740180214 RRVNVTSV 8 Unmodified _RRVNVTSV_ 0 0 0 REV__ENSG00000083642|ENST00000315596|PDS5B REV__ENSG00000083642|ENST00000315596|PDS5B MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 465.777608 929.540663 0.12797 5.9608E-05 0.55111 0.00025669 0.67908 0.0003163 465.77783133263586 85.842 0.41828 89.275 89.235 89.653 3.4329 0 0 NaN 15.847 121 55 3 NaN NaN NaN NaN 0 NaN NaN 0 306510 + 38707 17935 24509 24520 0.07307411740180214 RRVNVTSV 8 Unmodified _RRVNVTSV_ 0 0 0 REV__ENSG00000083642|ENST00000315596|PDS5B REV__ENSG00000083642|ENST00000315596|PDS5B MULTI-MATCH UPN48_class_I_Rep_2 6 2 465.777608 929.540663 0.19287 8.9834E-05 -0.29953 -0.00013952 -0.10666 -4.9682E-05 465.77751354444354 86.071 0.048721 89.777 89.748 89.797 3.7058 -0.0061664 -0.00056586 NaN 16.942 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 47055 + 38708 17935 24509 24520 0.07307411740180214 RRVPALLSPW 10 Unmodified _RRVPALLSPW_ 0 0 0 LTR12C_dup307|chr2:168724006-168725463:-|3.202163722294013|0.0751740475249864|5.41|151.0|45|1|anti-sense;LTR12C_dup2579|chr20:34897920-34899367:-|1.3974247339941972|0.2170413802897813|2.69|151.0|70|3|anti-sense LTR12C_dup307|chr2:168724006-168725463:-|3.202163722294013|0.0751740475249864|5.41|151.0|45|1|anti-sense LTR12C_dup307|chr2:168724006-168725463:-|3.202163722294013|0.0751740475249864|5.41|151.0|45|1|anti-sense MSMS UPN47_class_I_Rep_1 2 597.8571166992188 2 597.858932 1193.70331 NaN NaN NaN NaN NaN NaN NaN 83.771 1 87.336 86.836 87.836 3.5655 0 0 0 0.53105 1 20957 20957 1.4819 0.28856 1 38709 15546 24510 24521 43867 43867 0.11420795142180395 RRVPRRLVA 9 Unmodified _RRVPRRLVA_ 0 0 0 ENST00000433184.1_1_5:149340451-149341605:+|nuORF ENST00000433184.1_1_5:149340451-149341605:+|nuORF ENST00000433184.1_1_5:149340451-149341605:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 561.8703002929688 2 561.870166 1121.72578 0.42524 0.00023893 0.36534 0.00020527 0.79057 0.0004442 561.8702665428971 108.24 0.18048 111.93 111.88 112.06 3.6813 29 22 2 0 0 0 0.50015 1 25632 25632 0.6015 0 1 3192400 38710 6737 24511 24522 43868 43868 0.1697843933045533 RRVPRRLVA 9 Unmodified _RRVPRRLVA_ 0 0 0 ENST00000433184.1_1_5:149340451-149341605:+|nuORF ENST00000433184.1_1_5:149340451-149341605:+|nuORF ENST00000433184.1_1_5:149340451-149341605:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 561.870166 1121.72578 0.44391 0.00024942 0.11527 6.4764E-05 0.55918 0.00031418 562.3717063145788 108.39 0.087418 112.02 111.95 112.04 3.6313 0.045958 -0.00025378 NaN 0.6015 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 491100 38711 6737 24511 24522 0.1697843933045533 RRVPWKAA 8 Unmodified _RRVPWKAA_ 0 0 0 REV__L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|11|1|sense REV__L1PA7_dup10092|chr11:117402519-117405617:-|1.2004984378910468|0.248025842282668|2.28|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 492.2982482910156 2 492.29851 982.582468 NaN NaN NaN NaN NaN NaN NaN 42.571 1 46.213 45.713 46.713 3.6415 0 0 0 0.40746 1 7815 7815 0.69038 0 1 + 38712 29961 24512 24523 43869 43869 0.09048012219363955 RRVQGPTV 8 Unmodified _RRVQGPTV_ 0 0 0 HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|8|1|sense HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|8|1|sense HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 456.7716369628906 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 17.993 1 21.38 20.88 21.88 3.387 0 0 0 0.40738 1 1447 1447 0.79363 0 1 38713 8097 24513 24524 43870 43870 0.07079429085763422 RRVQNKLF 8 Unmodified _RRVQNKLF_ 0 0 0 REV__ENST00000531140.1_1_11:121174081-121177378:+|nuORF REV__ENST00000531140.1_1_11:121174081-121177378:+|nuORF MSMS UPN47_class_I_Rep_2 3 530.8218383789062 2 530.82235 1059.63015 NaN NaN NaN NaN NaN NaN NaN 74.225 1 77.53 77.03 78.03 3.3048 0 0 0 0.40604 1 18283 18283 2.5775 0 1 + 38714 22852 24514 24525 43871 43871 0.10271666419566827 RRVQQIGPQI 10 Unmodified _RRVQQIGPQI_ 0 0 0 REV__HERVK9-int_dup184|chr4:153693250-153693918:-|3.234157093820106|0.2035647745033717|3.99|149.0|16|2|sense REV__HERVK9-int_dup184|chr4:153693250-153693918:-|3.234157093820106|0.2035647745033717|3.99|149.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.8555297851562 2 597.856921 1193.69929 0.43327 0.00025903 -0.8405 -0.0005025 -0.40723 -0.00024347 597.8560557878972 83.345 0.54756 86.932 86.464 87.012 3.5871 107 63 2 0 0 0 0.56333 1 19943 19943 1.4819 0.95714 1 94377 + 38715 23825 24515 24526 43872 43872 0.11018705648461946 RRVRPVSLMVP 11 Unmodified _RRVRPVSLMVP_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|2|intron nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MULTI-MSMS UPN48_class_I_Rep_1 5 437.2678527832031 3 437.267691 1308.78124 -0.053714 -2.3488E-05 0.23123 0.00010111 0.17752 7.7623E-05 437.2676250984206 48.906 1.1197 52.43 51.535 52.655 3.5239 168 77 3 0 0 0 0.64331 3 9795 9628;9752;9795 3.8459 1.9184 1 547060 38716 3574 24516 24527 43873;43874;43875 43875 0.13920484735899663 RRVRPVSLMVP 11 Unmodified _RRVRPVSLMVP_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|2|intron nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MULTI-MSMS UPN48_class_I_Rep_2 6 437.26751708984375 3 437.267691 1308.78124 0.021564 9.4291E-06 0.20602 9.0086E-05 0.22758 9.9515E-05 437.26760578081763 48.548 1.3952 52.266 51.35 52.745 3.7175 246 95 4 0 0 0 0.66092 2 9553 9553;9706 2.2527 2.2527 1 387620 38717 3574 24516 24527 43876;43877 43876 0.13920484735899663 RRVRPVSLMVP 11 Unmodified _RRVRPVSLMVP_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|2|intron nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MULTI-MSMS UPN48_class_I_Rep_3 7 437.26763916015625 3 437.267691 1308.78124 0.049194 2.1511E-05 -0.1309 -5.7238E-05 -0.081705 -3.5727E-05 437.2675616375084 49.114 2.0679 52.743 51.501 53.568 3.6291 234 147 2 0 0 0 0.66092 5 9525 9525;9564;9669;9823;9860 2.2527 2.2527 1 482570 38718 3574 24516 24527 43878;43879;43880;43881;43882 43878 0.13920484735899663 RRVRPVSLMVP 11 Unmodified _RRVRPVSLMVP_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;ENSG00000151067.22,CACNA1C,chr12,+,I48.1,2674643,2677093|42|5.27|2|intron nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MULTI-MATCH UPN47_class_I_Rep_3 4 3 437.267691 1308.78124 -0.38947 -0.0001703 0.38349 0.00016769 -0.0059715 -2.6111E-06 437.2677372225893 49.095 0.44129 52.33 52.107 52.548 3.2345 -0.012064 0.00020405 NaN 3.8459 50 27 2 NaN NaN NaN NaN 0 NaN NaN 0 89413 38719 3574 24516 24527 0.13920484735899663 RRVTFHLPDGS 11 Unmodified _RRVTFHLPDGS_ 0 0 0 PCDH9|p.N1112Tfs*11|1|0.05|ENSG00000184226|chr13:66631217-66631217|G/-|frameshift_variant;nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9 PCDH9|p.N1112Tfs*11|1|0.05|ENSG00000184226|chr13:66631217-66631217|G/-|frameshift_variant PCDH9|p.N1112Tfs*11|1|0.05|ENSG00000184226|chr13:66631217-66631217|G/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 642.8429565429688 2 642.84401 1283.67347 NaN NaN NaN NaN NaN NaN NaN 35.645 1 39.057 38.557 39.557 3.4114 0 0 0 0.38417 1 6596 6596 1.0715 0.46996 1 38720 5042 24517 24528 43883 43883 0.04297811406172514 RRVVDWIW 8 Unmodified _RRVVDWIW_ 0 0 0 REV__ENSG00000185198|ENST00000329267|PRSS57 REV__ENSG00000185198|ENST00000329267|PRSS57 MSMS UPN47_class_I_Rep_3 4 565.3197631835938 2 565.3169 1128.61925 NaN NaN NaN NaN NaN NaN NaN 80.531 1 83.84 83.34 84.34 3.309 0 0 0 0.40604 1 20146 20146 2.5775 0.73324 1 + 38721 17442 24518 24529 43884 43884 0.060082640452719716 RRVVVGCRN 9 Unmodified _RRVVVGCRN_ 0 0 0 REV__L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|164|3|anti-sense REV__L1PA5_dup10199|chr16:56391236-56394461:+|1.6563311994187508|0.1651428595251653|3.33|150.0|164|3|anti-sense MSMS UPN48_class_I_Rep_2 6 529.8050537109375 2 529.803634 1057.59272 NaN NaN NaN NaN NaN NaN NaN 20.494 1 24.142 23.642 24.642 3.648 0 0 0 0.39518 1 1772 1772 1.8442 0 1 + 38722 29701 24519 24530 43885 43885 0.06622251882299679 RRVWPLRPN 9 Unmodified _RRVWPLRPN_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MSMS UPN48_class_I_Rep_2 6 597.3560180664062 2 597.354348 1192.69414 NaN NaN NaN NaN NaN NaN NaN 83.868 1 87.549 87.049 88.049 3.6814 0 0 0 0.4007 1 19948 19948 0.52476 0 1 + 38723 21560 24520 24531 43886 43886 0.10550446576530703 RRVWPLRPN 9 Unmodified _RRVWPLRPN_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 597.8558959960938 2 597.354348 1192.69414 0.55718 0.00033283 1.2197 0.00072862 1.7769 0.0010615 597.8555142078953 83.91 0.084991 87.638 87.589 87.674 3.7281 13 8 3 0 0 0 0.12532 1 19913 19913 0.52476 0 1 94955 + 38724 21560 24520 24531 43887 43887 0.10550446576530703 RRVWPLRPN 9 Unmodified _RRVWPLRPN_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 597.354348 1192.69414 0.54051 0.00032287 2.1967 0.0013122 2.7372 0.0016351 597.8560250536221 84.203 0.046913 87.626 87.601 87.647 3.4232 0.058975 0.00010081 NaN 0.52476 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 44877 + 38725 21560 24520 24531 0.10550446576530703 RRVWPLRPN 9 Unmodified _RRVWPLRPN_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 597.354348 1192.69414 0.48398 0.00028911 3.4198 0.0020428 3.9037 0.0023319 597.3569337318894 84.31 0.1304 87.671 87.627 87.758 3.3615 0.10377 0.001562 NaN 0.52476 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 181930 + 38726 21560 24520 24531 0.10550446576530703 RRVWPLRPN 9 Unmodified _RRVWPLRPN_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 597.354348 1192.69414 0.48278 0.00028839 1.61 0.00096173 2.0928 0.0012501 597.8561488302012 83.853 0.067703 87.535 87.478 87.546 3.6814 -0.032891 -0.00060017 NaN 0.52476 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 53197 + 38727 21560 24520 24531 0.10550446576530703 RRVWRFFK 8 Unmodified _RRVWRFFK_ 0 0 0 REV__ENSG00000185955|ENST00000332375|SPACDR REV__ENSG00000185955|ENST00000332375|SPACDR MSMS UPN46_class_I_Rep_3 1 597.85595703125 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 90.514 1 90.514 90.014 91.014 0 0 0 0 0.40746 1 21830 21830 0.69038 0 1 + 38728 20868 24521 24532 43888 43888 0.1043165192743345 RRVWRFFK 8 Unmodified _RRVWRFFK_ 0 0 0 REV__ENSG00000185955|ENST00000332375|SPACDR REV__ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_2 3 597.8565673828125 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 83.704 1 87.115 86.615 87.615 3.4116 0 0 0 0.40746 1 20872 20872 0.69038 0 1 + 38729 20868 24521 24532 43889 43889 0.1043165192743345 RRVWRFFK 8 Unmodified _RRVWRFFK_ 0 0 0 REV__ENSG00000185955|ENST00000332375|SPACDR REV__ENSG00000185955|ENST00000332375|SPACDR MSMS UPN47_class_I_Rep_3 4 597.8563232421875 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 84.228 1 87.59 87.09 88.09 3.3615 0 0 0 0.40746 1 21138 21138 0.69038 0 1 + 38730 20868 24521 24532 43890 43890 0.1043165192743345 RRVWRFFK 8 Unmodified _RRVWRFFK_ 0 0 0 REV__ENSG00000185955|ENST00000332375|SPACDR REV__ENSG00000185955|ENST00000332375|SPACDR MSMS UPN48_class_I_Rep_1 5 597.856201171875 2 597.853984 1193.69342 NaN NaN NaN NaN NaN NaN NaN 84.091 1 87.688 87.188 88.188 3.5973 0 0 0 0.40746 1 20128 20128 0.69038 0 1 + 38731 20868 24521 24532 43891 43891 0.1043165192743345 RRVWRFFK 8 Unmodified _RRVWRFFK_ 0 0 0 REV__ENSG00000185955|ENST00000332375|SPACDR REV__ENSG00000185955|ENST00000332375|SPACDR MULTI-SECPEP UPN48_class_I_Rep_1 5 597.856201171875 2 597.853984 1193.69342 0.43148 0.00025796 3.7433 0.0022379 4.1748 0.0024959 598.3580649709692 84.057 0.052498 87.654 87.636 87.688 3.5973 7 4 2 0 0 0 0.72333 1 20128 20128 0.69038 0 1 43023 + 38732 20868 24521 24532 43892 43892 0.1043165192743345 RRVYGFLG 8 Unmodified _RRVYGFLG_ 0 0 0 L1PB4_dup5036|chr10:75821804-75822731:+|1.0179887969294132|0.0135626285791916|6.23|149.0|61|3|anti-sense L1PB4_dup5036|chr10:75821804-75822731:+|1.0179887969294132|0.0135626285791916|6.23|149.0|61|3|anti-sense L1PB4_dup5036|chr10:75821804-75822731:+|1.0179887969294132|0.0135626285791916|6.23|149.0|61|3|anti-sense MSMS UPN47_class_I_Rep_3 4 484.275146484375 2 484.277244 966.539935 NaN NaN NaN NaN NaN NaN NaN 70.62 1 73.832 73.332 74.332 3.2113 0 0 0 0.40604 1 17286 17286 2.5775 1.7838 1 38733 15319 24522 24533 43893 43893 0.055326170911371264 RRWALPLKKG 10 Unmodified _RRWALPLKKG_ 0 0 0 REV__ENST00000413040.6_1_7:151074400-151074604:+|nuORF REV__ENST00000413040.6_1_7:151074400-151074604:+|nuORF MSMS UPN48_class_I_Rep_1 5 612.6871337890625 2 612.888024 1223.7615 NaN NaN NaN NaN NaN NaN NaN 37.191 1 40.698 40.198 41.198 3.507 0 0 0 0.53105 1 6296 6296 0.40072 0 1 + 38734 22198 24523 24534 43894 43894 0.15856476787439533 RRWALPRPR 9 Unmodified _RRWALPRPR_ 0 0 0 REV__nc|ENSG00000176753|Q8N910|PAK6-AS1 REV__nc|ENSG00000176753|Q8N910|PAK6-AS1 MSMS UPN48_class_I_Rep_1 5 604.3670043945312 2 604.36779 1206.72103 NaN NaN NaN NaN NaN NaN NaN 101.26 1 104.88 104.38 105.38 3.612 0 0 0 0.4007 1 24446 24446 0.52476 0 1 + 38735 32065 24524 24535 43895 43895 0.12593555187663696 RRWCSNVKTS 10 Unmodified _RRWCSNVKTS_ 0 0 0 MLT1D_dup14062|chr11:130289981-130290431:+|1.1201511897538474|0.0093686755790576|6.9|150.0|18|3|sense MLT1D_dup14062|chr11:130289981-130290431:+|1.1201511897538474|0.0093686755790576|6.9|150.0|18|3|sense MLT1D_dup14062|chr11:130289981-130290431:+|1.1201511897538474|0.0093686755790576|6.9|150.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 618.8181762695312 2 618.816938 1235.61932 NaN NaN NaN NaN NaN NaN NaN 63.973 1 67.481 66.981 67.981 3.5083 0 0 0 0.53105 1 14346 14346 1.3295 0 1 38736 16333 24525 24536 43896 43896 0.010938959829445594 RRWEKWEL 8 Unmodified _RRWEKWEL_ 0 0 0 ENSG00000115718|ENST00000234071|PROC;nc|ENSG00000115718|P04070-2|PROC ENSG00000115718|ENST00000234071|PROC ENSG00000115718|ENST00000234071|PROC MSMS UPN48_class_I_Rep_3 7 601.7973022460938 2 601.825089 1201.63563 NaN NaN NaN NaN NaN NaN NaN 111.86 1 115.52 115.02 116.02 3.6614 0 0 0 0.40753 1 26559 26559 0.6015 0 1 38737 2138 24526 24537 43897 43897 0.04287345211378124 RRWERRKRGTK 11 Unmodified _RRWERRKRGTK_ 0 0 0 L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|62|3|sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|62|3|sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|62|3|sense MSMS UPN48_class_I_Rep_3 7 510.30499267578125 3 510.306308 1527.89709 NaN NaN NaN NaN NaN NaN NaN 75.762 1 79.345 78.845 79.845 3.5831 0 0 0 0.38417 1 17816 17816 0.094841 0 1 38738 12211 24527 24538 43898 43898 0.15426144630941963 RRWFLWRRRRR 11 Unmodified _RRWFLWRRRRR_ 0 0 0 ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF MSMS UPN48_class_I_Rep_2 6 582.1431274414062 3 582.017092 1743.02945 NaN NaN NaN NaN NaN NaN NaN 40.129 1 43.87 43.37 44.37 3.7413 0 0 0 0.38417 1 7194 7194 0 0 1 38739 6368 24528 24539 43899 43899 0.1876521415838397 RRWFLWRRRRR 11 Unmodified _RRWFLWRRRRR_ 0 0 0 ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF MSMS UPN48_class_I_Rep_2 6 582.3518676757812 3 582.017092 1743.02945 NaN NaN NaN NaN NaN NaN NaN 40.647 1 44.388 43.888 44.888 3.7413 0 0 0 0.38417 1 7339 7339 0 0 1 38740 6368 24528 24539 43900 43900 0.1876521415838397 RRWGLLVP 8 Unmodified _RRWGLLVP_ 0 0 0 REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|303|2|anti-sense REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|303|2|anti-sense MSMS UPN48_class_I_Rep_3 7 498.8088073730469 2 498.808711 995.602869 NaN NaN NaN NaN NaN NaN NaN 23.563 1 27.314 26.814 27.814 3.7507 0 0 0 0.40738 1 2600 2600 0.79363 0 1 + 38741 30165 24529 24540 43901 43901 0.1048918287918923 RRWHRKRRKL 10 Unmodified _RRWHRKRRKL_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS UPN47_class_I_Rep_1 2 497.9837951660156 3 497.983388 1490.92833 NaN NaN NaN NaN NaN NaN NaN 90.562 1 94.252 93.752 94.752 3.6899 0 0 0 0.53105 1 22621 22621 0 0 1 38742 6653 24530 24541 43902 43902 0.20250762455702898 RRWIWILCP 9 Unmodified _RRWIWILCP_ 0 0 0 REV__ENST00000420069.3_3_11:67195969-67200219:+|nuORF REV__ENST00000420069.3_3_11:67195969-67200219:+|nuORF MSMS UPN46_class_I_Rep_3 1 621.8528442382812 2 621.850053 1241.68555 NaN NaN NaN NaN NaN NaN NaN 103.21 1 103.21 102.71 103.71 0 0 0 0 0.40038 1 25186 25186 0.6015 0.076735 1 + 38743 22241 24531 24542 43903 43903 0.07437756615672697 RRWKIFFMSLL 11 Unmodified _RRWKIFFMSLL_ 0 0 0 L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|103|1|anti-sense L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|103|1|anti-sense L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|103|1|anti-sense MSMS UPN48_class_I_Rep_3 7 499.62188720703125 3 499.623475 1495.8486 NaN NaN NaN NaN NaN NaN NaN 28.008 1 31.751 31.251 32.251 3.7424 0 0 0 0.38417 1 3753 3753 0.50596 0.41111 1 38744 9755 24532 24543 43904 43904 0.12050514946872681 RRWLGPGP 8 Unmodified _RRWLGPGP_ 0 0 0 REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF MSMS UPN48_class_I_Rep_1 5 469.771240234375 2 469.769586 937.524619 NaN NaN NaN NaN NaN NaN NaN 54.871 1 58.38 57.88 58.88 3.5082 0 0 0 0.40581 1 11660 11660 2.8892 2.0956 1 + 38745 21715 24533 24544 43905 43905 0.0533575029394342 RRWLGPGP 8 Unmodified _RRWLGPGP_ 0 0 0 REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF MSMS UPN48_class_I_Rep_1 5 469.7710266113281 2 469.769586 937.524619 NaN NaN NaN NaN NaN NaN NaN 56.059 1 59.561 59.061 60.061 3.5014 0 0 0 0.40581 1 12026 12026 2.8892 0.58649 1 + 38746 21715 24533 24544 43906 43906 0.0533575029394342 RRWLQLWR 8 Unmodified _RRWLQLWR_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2;chr14:103121499-103123437|128|19.97|0.0|20.93|+|ENST00000333007|TNFAIP2,TNFAIP2 REV__ENSG00000185215|ENST00000560869|TNFAIP2 REV__ENSG00000185215|ENST00000560869|TNFAIP2 MSMS UPN48_class_I_Rep_1 5 405.2398376464844 3 405.240353 1212.69923 NaN NaN NaN NaN NaN NaN NaN 91.382 1 95.008 94.508 95.508 3.626 0 0 0 0.40501 1 21957 21957 3.9444 0 1 38747 586 24534 24545 43907 43907 0.10138750439114119 RRWNRKLLQ 9 Unmodified _RRWNRKLLQ_ 0 0 0 REV__ENST00000256412.8_1_8:24241812-24241986:+|nuORF REV__ENST00000256412.8_1_8:24241812-24241986:+|nuORF MSMS UPN47_class_I_Rep_3 4 635.3853759765625 2 635.38618 1268.75781 NaN NaN NaN NaN NaN NaN NaN 83.651 1 87.001 86.501 87.501 3.35 0 0 0 0.4007 1 20986 20986 0.52476 0 1 + 38748 21535 24535 24546 43908 43908 0.13417807013615857 RRWRGPRRR 9 Unmodified _RRWRGPRRR_ 0 0 0 REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 648.3925170898438 2 648.392662 1294.77077 0.65362 0.0004238 0.72518 0.0004702 1.3788 0.00089401 648.3931083341029 107.53 0.20755 111.21 111.09 111.29 3.6813 48 26 2 0 0 0 0.50088 1 25344 25344 0.52476 0 1 6446400 + 38749 21564 24536 24547 43909 43909 0.13517682916335616 RRWRGPRRR 9 Unmodified _RRWRGPRRR_ 0 0 0 REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF REV__ENST00000261721.8_1_15:83735740-83736061:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 648.392662 1294.77077 0.58447 0.00037897 0.63952 0.00041466 1.224 0.00079363 648.3935354013066 107.43 0.27424 111.11 111.02 111.3 3.6724 -0.050427 -5.7921E-05 NaN 0.52476 59 35 2 NaN NaN NaN NaN 0 NaN NaN 0 2874400 + 38750 21564 24536 24547 0.13517682916335616 RRWRLILRYHL 11 Unmodified _RRWRLILRYHL_ 0 0 0 HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|13|1|sense HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|13|1|sense HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.7326049804688 3 527.991549 1580.95282 0.45153 0.0002384 -1.5136 -0.00079918 -1.0621 -0.00056078 527.99061885745 107.48 0.15159 111.15 111.03 111.19 3.6724 27 19 2 0 0 0 0.68081 1 26315 26315 0.45452 0.45452 1 2238600 38751 8243 24537 24548 43910 43910 0.18557977818613836 RRWRRRRRRL 10 Unmodified _RRWRRRRRRL_ 0 0 0 ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF ENST00000492275.5_1_21:38445580-38480706:+|nuORF ENST00000492275.5_1_21:38445580-38480706:+|nuORF MSMS UPN48_class_I_Rep_3 7 523.0007934570312 3 523.001553 1565.98283 NaN NaN NaN NaN NaN NaN NaN 106.77 1 110.46 109.96 110.96 3.6899 0 0 0 0.53105 1 25169 25169 0.13989 0.13989 1 38752 6280 24538 24549 43911 43911 0.2224777432713836 RRWTFSIDR 9 Unmodified _RRWTFSIDR_ 0 0 0 REV__ENST00000430312.1_1_1:155172203-155174968:+|nuORF REV__ENST00000430312.1_1_1:155172203-155174968:+|nuORF MSMS UPN48_class_I_Rep_3 7 618.8322143554688 2 618.833446 1235.65234 NaN NaN NaN NaN NaN NaN NaN 46.184 1 49.821 49.321 50.321 3.6369 0 0 0 0.3967 1 8927 8927 1.4819 0 1 + 38753 22289 24539 24550 43912 43912 0.04393846097309506 RRWVGGLL 8 Unmodified _RRWVGGLL_ 0 0 0 REV__ENST00000503481.5_1_5:138723556-138723721:-|nuORF REV__ENST00000503481.5_1_5:138723556-138723721:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 479.3089904785156 2 478.793061 955.571569 0.14806 7.0888E-05 -1.4934 -0.00071502 -1.3453 -0.00064413 478.7921928652707 54.249 0.48586 57.763 57.528 58.014 3.5143 49 33 2 0 0 0 0.82752 1 11424 11424 9.3474 0.75416 1 83566 + 38754 22698 24540 24551 43913 43913 0.09200609845106555 RRWWWLQRRQA 11 Unmodified _RRWWWLQRRQA_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS UPN47_class_I_Rep_1 2 547.9697265625 3 547.971037 1640.89128 NaN NaN NaN NaN NaN NaN NaN 54.92 1 58.421 57.921 58.921 3.5014 0 0 0 0.38417 1 12426 12426 0.094841 0 1 38755 7619 24541 24552 43914 43914 0.09647046119289371 RRWWWLQRRQA 11 Unmodified _RRWWWLQRRQA_ 0 0 0 ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS UPN47_class_I_Rep_2 3 547.9697265625 3 547.971037 1640.89128 NaN NaN NaN NaN NaN NaN NaN 55.363 1 58.673 58.173 59.173 3.3102 0 0 0 0.38417 1 12590 12590 0.094841 0.094841 1 38756 7619 24541 24552 43915 43915 0.09647046119289371 RRYDWRKR 8 Unmodified _RRYDWRKR_ 0 0 0 REV__AluSg4_dup4906|chr13:28144719-28145017:-|1.4313133841197614|0.0109583208082802|7.03|151.0|19|3|anti-sense REV__AluSg4_dup4906|chr13:28144719-28145017:-|1.4313133841197614|0.0109583208082802|7.03|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_2 6 618.34716796875 2 618.347055 1234.67956 NaN NaN NaN NaN NaN NaN NaN 56.217 1 59.75 59.25 60.25 3.5333 0 0 0 0.40753 1 12053 12053 0.6015 0 1 + 38757 17102 24542 24553 43916 43916 0.07160374428349314 RRYFIRALF 9 Unmodified _RRYFIRALF_ 0 0 0 REV__L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|49|2|anti-sense REV__L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|49|2|anti-sense MSMS UPN46_class_I_Rep_3 1 621.3687744140625 2 621.366924 1240.7193 NaN NaN NaN NaN NaN NaN NaN 64.074 1 64.074 63.574 64.574 0 0 0 0 0.39428 1 14401 14401 2.0598 0.21551 1 + 38758 27069 24543 24554 43917 43917 0.10856501379066685 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MSMS UPN46_class_I_Rep_3 1 641.8827514648438 2 641.881884 1281.74922 0.7499 0.00048135 0.8011 0.00051421 1.551 0.00099556 641.8822741831076 92.098 0.14932 92.098 92.026 92.175 0 31 17 2 0 0 0 0.50088 1 22283 22283 0.52476 0.52476 1 423130 38759 4945 24544 24555 43918 43918 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MSMS UPN46_class_I_Rep_3 1 641.8828125 2 641.881884 1281.74922 NaN NaN NaN NaN NaN NaN NaN 90.245 1 90.245 89.745 90.745 0 0 0 0 0.4007 1 21755 21755 0.52476 0 1 38760 4945 24544 24555 43919 43919 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MSMS UPN46_class_I_Rep_3 1 641.8829345703125 2 641.881884 1281.74922 NaN NaN NaN NaN NaN NaN NaN 93.666 1 93.666 93.166 94.166 0 0 0 0 0.4007 1 22707 22707 0.52476 0 1 38761 4945 24544 24555 43920 43920 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-SECPEP UPN46_class_I_Rep_3 1 641.8824462890625 2 641.881884 1281.74922 0.75057 0.00048178 0.58231 0.00037377 1.3329 0.00085555 642.3836725631445 92.318 0.15652 92.318 92.258 92.415 0 27 16 3 0 0 0 0.12532 1 22330 22330 0.52476 0.12405 1 2163600 38762 4945 24544 24555 43921 43921 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MSMS UPN47_class_I_Rep_1 2 641.88330078125 2 641.881884 1281.74922 0.5497 0.00035284 0.81364 0.00052226 1.3633 0.0008751 641.8822552178544 89.298 0.58192 92.971 92.841 93.423 3.6738 129 67 3 0 0 0 0.50088 2 22348 22348;22422 0.52476 0.52476 1 138420 38763 4945 24544 24555 43922;43923 43922 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MSMS UPN47_class_I_Rep_1 2 641.8833618164062 2 641.881884 1281.74922 NaN NaN NaN NaN NaN NaN NaN 87.066 1 90.704 90.204 91.204 3.6372 0 0 0 0.4007 1 21751 21751 0.52476 0 1 38764 4945 24544 24555 43924 43924 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MSMS UPN47_class_I_Rep_1 2 641.8828125 2 641.881884 1281.74922 NaN NaN NaN NaN NaN NaN NaN 87.253 1 90.89 90.39 91.39 3.6372 0 0 0 0.4007 1 21798 21798 0.52476 0 1 38765 4945 24544 24555 43925 43925 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MSMS UPN47_class_I_Rep_2 3 641.8819580078125 2 641.881884 1281.74922 0.59092 0.0003793 1.0737 0.0006892 1.6646 0.0010685 641.8823456429254 89.624 0.17653 93.081 92.969 93.146 3.4571 40 24 2 0 0 0 0.50088 1 22265 22265 0.52476 0 1 81099 38766 4945 24544 24555 43926 43926 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MSMS UPN47_class_I_Rep_2 3 641.8815307617188 2 641.881884 1281.74922 NaN NaN NaN NaN NaN NaN NaN 87.316 1 90.757 90.257 91.257 3.4407 0 0 0 0.4007 1 21705 21705 0.52476 0 1 38767 4945 24544 24555 43927 43927 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MSMS UPN48_class_I_Rep_1 5 641.8828735351562 2 641.881884 1281.74922 0.44288 0.00028428 0.96588 0.00061998 1.4088 0.00090426 641.8824156598192 89.223 0.38798 92.848 92.755 93.143 3.6255 69 42 2 0 0 0 0.50088 1 21478 21478 0.52476 0.12405 1 139530 38768 4945 24544 24555 43928 43928 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 641.881884 1281.74922 0.74929 0.00048096 -0.027462 -1.7627E-05 0.72183 0.00046333 641.8818663779095 92.956 0.15825 92.956 92.899 93.057 0 -0.034788 -0.0010731 NaN 0.52476 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4314300 38769 4945 24544 24555 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 641.881884 1281.74922 0.54524 0.00034998 0.78726 0.00050533 1.3325 0.00085531 641.8822560111303 88.699 1.0344 92.355 91.779 92.814 3.6563 0.10967 -2.8106E-05 NaN 0.52476 266 132 3 NaN NaN NaN NaN 0 NaN NaN 0 163310 38770 4945 24544 24555 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 641.881884 1281.74922 0.50129 0.00032177 0.87177 0.00055957 1.3731 0.00088134 641.8823404856225 88.895 0.80482 92.288 91.86 92.665 3.3931 0.042687 8.0385E-05 NaN 0.52476 172 101 2 NaN NaN NaN NaN 0 NaN NaN 0 187690 38771 4945 24544 24555 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 641.881884 1281.74922 0.44522 0.00028578 0.90823 0.00058298 1.3534 0.00086875 641.8823124700398 88.383 0.55605 92.006 91.496 92.052 3.6229 -0.23961 0.00012719 NaN 0.52476 133 62 3 NaN NaN NaN NaN 0 NaN NaN 0 312700 38772 4945 24544 24555 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 641.881884 1281.74922 0.44475 0.00028548 0.92235 0.00059204 1.3671 0.00087752 641.8824258953256 88.469 0.14096 92.092 92.045 92.186 3.6229 0.06168 0.00010751 NaN 0.52476 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 261180 38773 4945 24544 24555 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 641.881884 1281.74922 0.6547 0.00042024 0.83053 0.00053311 1.4852 0.00095335 641.8822159023769 88.45 0.49598 92.26 91.956 92.452 3.8104 0.014602 2.7447E-05 NaN 0.52476 129 61 3 NaN NaN NaN NaN 0 NaN NaN 0 303090 38774 4945 24544 24555 0.11961117052783266 RRYFMKRLL 9 Unmodified _RRYFMKRLL_ 0 0 0 ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN ENSG00000182263|ENST00000333129|FIGN MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 641.881884 1281.74922 0.65556 0.00042079 0.72848 0.0004676 1.384 0.00088839 641.8823105269087 88.09 0.37157 91.901 91.585 91.956 3.8104 -0.1292 -0.00014137 NaN 0.52476 61 44 3 NaN NaN NaN NaN 0 NaN NaN 0 205190 38775 4945 24544 24555 0.11961117052783266 RRYGWSNLL 9 Unmodified _RRYGWSNLL_ 0 0 0 REV__AluSx1_dup75494|chr12:62330307-62330602:+|2.076483771169484|0.0910230132719782|4.51|151.0|14|1|anti-sense REV__AluSx1_dup75494|chr12:62330307-62330602:+|2.076483771169484|0.0910230132719782|4.51|151.0|14|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.816162109375 2 582.817264 1163.61998 0.48625 0.00028339 -1.3014 -0.00075845 -0.81511 -0.00047506 582.8163527646128 68.547 0.1516 72.055 71.931 72.083 3.5083 27 15 2 0 0 0 0.38714 1 15799 15799 8.7454 0.58988 1 384560 + 38776 17184 24545 24556 43929 43929 0.0447105869434381 RRYIKYLQS 9 Unmodified _RRYIKYLQS_ 0 0 0 REV__L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|16|1|sense REV__L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 613.854736328125 2 613.853847 1225.69314 NaN NaN NaN NaN NaN NaN NaN 62.783 1 66.245 65.745 66.745 3.4625 0 0 0 0.39598 1 14079 14079 1.6526 0 1 + 38777 24537 24546 24557 43930 43930 0.08932187416939996 RRYKLQKQ 8 Unmodified _RRYKLQKQ_ 0 0 0 ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2;ENST00000473916.1_1_6:30891971-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF;ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2 ENSG00000137411|ENST00000676266|VARS2 ENSG00000137411|ENST00000676266|VARS2 MULTI-MSMS UPN48_class_I_Rep_1 5 560.3395385742188 2 560.340907 1118.66726 0.45342 0.00025407 -0.51303 -0.00028747 -0.059605 -3.3399E-05 560.3405680673864 95.237 0.10136 98.853 98.794 98.896 3.6167 16 10 2 0 0 0 0.82752 1 22929 22929 0.69038 0 1 83772 38778 3022 24547 24558 43931 43931 0.11267337965296065 RRYKLQKQ 8 Unmodified _RRYKLQKQ_ 0 0 0 ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2;ENST00000473916.1_1_6:30891971-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF;ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2 ENSG00000137411|ENST00000676266|VARS2 ENSG00000137411|ENST00000676266|VARS2 MULTI-MSMS UPN48_class_I_Rep_3 7 560.3407592773438 2 560.340907 1118.66726 0.42193 0.00023643 -1.3308 -0.00074572 -0.9089 -0.00050929 560.3401818934949 94.487 0.17456 98.389 98.329 98.504 3.9016 31 23 2 0 0 0 0.82752 1 22392 22392 0.69038 0 1 156580 38779 3022 24547 24558 43932 43932 0.11267337965296065 RRYLNRTR 8 Unmodified _RRYLNRTR_ 0 0 0 REV__ENSG00000101343|ENST00000536226|CRNKL1 REV__ENSG00000101343|ENST00000536226|CRNKL1 MSMS UPN46_class_I_Rep_3 1 567.6678466796875 2 567.83378 1133.65301 NaN NaN NaN NaN NaN NaN NaN 82.084 1 82.084 81.584 82.584 0 0 0 0 0.40753 1 19424 19424 0.6015 0 1 + 38780 18156 24548 24559 43933 43933 0.09152685537014804 RRYNIYKHLRI 11 Unmodified _RRYNIYKHLRI_ 0 0 0 L1M4c_dup1211|chr6:107949936-107950582:+|1.5126077149562502|0.0137177659860209|6.78|151.0|19|3|sense L1M4c_dup1211|chr6:107949936-107950582:+|1.5126077149562502|0.0137177659860209|6.78|151.0|19|3|sense L1M4c_dup1211|chr6:107949936-107950582:+|1.5126077149562502|0.0137177659860209|6.78|151.0|19|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 510.6341247558594 3 511.303793 1530.88955 0.2299 0.00011755 -2.0707 -0.0010588 -1.8408 -0.00094123 511.30273219756526 96.787 0.050781 100.4 100.38 100.43 3.6088 5 4 2 0 0 0 22.551 1 23337 23337 0.094841 0 1 91268 38781 9033 24549 24560 43934 43934 0.14533992310680333 RRYQKRRKHN 10 Unmodified _RRYQKRRKHN_ 0 0 0 REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|12|1|sense REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 481.2837219238281 3 481.283503 1440.82868 0.11998 5.7743E-05 0.1376 6.6226E-05 0.25758 0.00012397 481.28343974621 94.515 1.3295 98.136 97.384 98.714 3.6208 331 161 4 0 0 0 0.56523 1 22602 22602 0.13989 0.13989 1 447200 + 38782 26550 24550 24561 43935 43935 0.12589900051102632 RRYVTYLQLIT 11 Unmodified _RRYVTYLQLIT_ 0 0 0 REV__L1M4c_dup1256|chr6:158578121-158578915:+|1.1328476377475891|0.0292714174912929|5.27|151.0|20|2|sense REV__L1M4c_dup1256|chr6:158578121-158578915:+|1.1328476377475891|0.0292714174912929|5.27|151.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 475.2782287597656 3 475.945271 1424.81398 0.30059 0.00014307 0.63549 0.00030246 0.93608 0.00044552 476.27898128617636 59.657 0.49982 63.144 62.914 63.414 3.4868 52 37 2 0 0 0 22.551 1 13062 13062 2.8433 0 1 473440 + 38783 24571 24551 24562 43936 43936 0.1185697033974975 RRYYCQNR 8 Unmodified _RRYYCQNR_ 0 0 0 REV__Tigger3b_dup1637|chr4:67483425-67484344:+|1.897473817208198|0.2869555392631713|2.73|151.0|27|3|sense REV__Tigger3b_dup1637|chr4:67483425-67484344:+|1.897473817208198|0.2869555392631713|2.73|151.0|27|3|sense MSMS UPN48_class_I_Rep_1 5 579.7843017578125 2 579.782899 1157.55124 NaN NaN NaN NaN NaN NaN NaN 32.889 1 36.416 35.916 36.916 3.5266 0 0 0 0.40625 1 5059 5059 2.3027 0.9732 1 + 38784 32729 24552 24563 43937 43937 -0.021229288770427956 RSAISDRQR 9 Unmodified _RSAISDRQR_ 0 0 0 REV__ENST00000558657.1_1_15:50087131-50087983:+|nuORF REV__ENST00000558657.1_1_15:50087131-50087983:+|nuORF MSMS UPN46_class_I_Rep_3 1 544.8021850585938 2 544.799603 1087.58465 NaN NaN NaN NaN NaN NaN NaN 28.402 1 28.402 27.902 28.902 0 0 0 0 0.39036 1 4355 4355 2.9952 1.151 1 + 38785 18970 24553 24564 43938 43938 0.04436396166511258 RSAITGLVY 9 Unmodified _RSAITGLVY_ 0 0 0 ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 MULTI-MSMS UPN46_class_I_Rep_3 1 490.2817077636719 2 490.282192 978.549831 -0.16068 -7.8778E-05 -0.16523 -8.1008E-05 -0.32591 -0.00015979 490.2821847920841 21.249 0.32957 21.249 21.063 21.392 0 47 34 2 0 0 0 0.30034 1 2369 2369 13.906 1.3745 1 81840 38786 1370 24554 24565 43939 43939 0.05969760305856653 RSALEVGRS 9 Unmodified _RSALEVGRS_ 0 0 0 ENST00000567941.5_1_15:73075655-73075820:-|nuORF ENST00000567941.5_1_15:73075655-73075820:-|nuORF ENST00000567941.5_1_15:73075655-73075820:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 487.7723083496094 2 487.772522 973.530492 -0.27809 -0.00013564 -0.090803 -4.4291E-05 -0.36889 -0.00017994 487.77246455873075 16.183 1.6642 16.183 15.587 17.251 0 384 197 3 0 0 0 0.20317 1 1177 1177 20.415 3.3016 1 297570 38787 7499 24555 24566 43940 43940 0.0426680401495787 RSARAEQHR 9 Unmodified _RSARAEQHR_ 0 0 0 REV__ENST00000463135.1_1_X:37301017-37301152:+|nuORF REV__ENST00000463135.1_1_X:37301017-37301152:+|nuORF MSMS UPN48_class_I_Rep_3 7 555.79736328125 2 555.797395 1109.58024 NaN NaN NaN NaN NaN NaN NaN 58.153 1 61.685 61.185 62.185 3.5317 0 0 0 0.38784 1 12576 12576 3.5965 0 1 + 38788 22445 24556 24567 43941 43941 0.029829317435996927 RSARRLAPH 9 Unmodified _RSARRLAPH_ 0 0 0 REV__ENSG00000181481|ENST00000328381|RNF135 REV__ENSG00000181481|ENST00000328381|RNF135 MULTI-MSMS UPN46_class_I_Rep_3 1 532.3143920898438 2 532.315223 1062.61589 0.33765 0.00017974 1.0113 0.00053834 1.349 0.00071807 532.3157623924019 108.01 0.65218 108.01 107.91 108.57 0 82 62 2 0 0 0 0.31407 1 26383 26383 13.042 3.6593 1 40472000 + 38789 20735 24557 24568 43942 43942 0.08709013991256143 RSAVFSVTY 9 Unmodified _RSAVFSVTY_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;DOCK8|p.D1681*|1|0.32|ENSG00000107099|chr9:434936-434937|-/T|frameshift_variant nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS UPN48_class_I_Rep_1 5 515.2720336914062 2 515.271824 1028.5291 0.24058 0.00012397 -0.021951 -1.1311E-05 0.21863 0.00011265 515.2717396856658 48.924 0.95648 52.448 52.07 53.027 3.5239 200 69 4 0 0 0 0.0054033 5 9805 9766;9805;9845;9883;9921 89.401 41.055 1 1035500 38790 1811 24558 24569 43943;43944;43945;43946;43947 43944 0.01597169926208153 RSAVFSVTY 9 Unmodified _RSAVFSVTY_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;DOCK8|p.D1681*|1|0.32|ENSG00000107099|chr9:434936-434937|-/T|frameshift_variant nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS UPN48_class_I_Rep_2 6 515.2719116210938 2 515.271824 1028.5291 0.25857 0.00013324 -0.13155 -6.7786E-05 0.12702 6.545E-05 515.2717109803918 48.652 1.0735 52.369 51.959 53.032 3.7175 186 74 3 0 0 0 0.0058741 7 9763 9681;9720;9763;9809;9848;9889;9950 76.825 28.479 1 889210 38791 1811 24558 24569 43948;43949;43950;43951;43952;43953;43954 43950 0.01597169926208153 RSAVFSVTY 9 Unmodified _RSAVFSVTY_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;chr9:379935-380279|149|62.05|0.78|6.32|+|ENST00000483757|DOCK8,DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;DOCK8|p.D1681*|1|0.32|ENSG00000107099|chr9:434936-434937|-/T|frameshift_variant nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2718505859375 2 515.271824 1028.5291 0.24539 0.00012644 -0.025821 -1.3305E-05 0.21957 0.00011314 515.27177830905 48.848 1.0208 52.477 52.042 53.063 3.6291 186 77 4 0 0 0 0.0054033 5 9764 9683;9724;9764;9801;9841 78.728 30.382 1 1050900 38792 1811 24558 24569 43955;43956;43957;43958;43959 43957 0.01597169926208153 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 516.6776123046875 2 516.677539 1031.34052 0.32434 0.00016758 0.74916 0.00038707 1.0735 0.00055465 516.6776253703878 103.95 0.54257 103.95 103.61 104.15 0 128 51 3 0 0 0 0.48846 4 25320 25320;25361;25397;25432 1.8442 0 1 1368500 38793 7663 24559 24570 43960;43961;43962;43963 43960 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 516.6780395507812 2 516.677539 1031.34052 0.39062 0.00020182 0.32718 0.00016905 0.7178 0.00037087 516.6776188359297 99.721 0.38419 103.51 103.31 103.69 3.7942 118 49 3 0 0 0 0.48846 1 24674 24674 1.8442 0 1 506740 38794 7663 24559 24570 43964 43964 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 516.6781616210938 2 516.677539 1031.34052 0.3901 0.00020156 0.60083 0.00031044 0.99094 0.00051199 516.6777799672179 100.01 0.20491 103.81 103.76 103.97 3.7942 41 24 2 0 0 0 0.5015 1 24744 24744 0.45834 0 1 510150 38795 7663 24559 24570 43965 43965 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 516.6778564453125 2 516.677539 1031.34052 0.27224 0.00014066 0.44396 0.00022938 0.71619 0.00037004 516.6776310841221 99.99 0.29466 103.49 103.43 103.73 3.4974 68 39 2 0 0 0 0.48846 1 24466 24466 1.8442 0 1 800320 38796 7663 24559 24570 43966 43966 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 516.677734375 2 516.677539 1031.34052 0.34937 0.00018051 0.57687 0.00029806 0.92623 0.00047856 516.6777099163719 99.757 0.14079 103.21 103.09 103.24 3.4483 43 18 3 0 0 0 0.48846 1 24649 24649 1.8442 0 1 448090 38797 7663 24559 24570 43967 43967 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 516.6778564453125 2 516.677539 1031.34052 0.34861 0.00018012 0.43261 0.00022352 0.78123 0.00040364 516.677648362868 99.983 0.35732 103.43 103.24 103.59 3.4483 83 45 2 0 0 0 0.48846 2 24685 24685;24715 1.8442 0 1 751420 38798 7663 24559 24570 43968;43969 43968 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 516.6778564453125 2 516.677539 1031.34052 0.25243 0.00013043 0.58648 0.00030302 0.83891 0.00043345 516.6776543067102 99.62 0.67842 103.23 103.05 103.72 3.6065 134 85 3 0 0 0 0.48846 1 24069 24069 1.8442 0 1 477190 38799 7663 24559 24570 43970 43970 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 516.6780395507812 2 516.677539 1031.34052 0.34874 0.00018019 0.60336 0.00031174 0.95209 0.00049193 517.1794974515169 99.613 0.51427 103.37 103.12 103.64 3.7575 101 65 2 0 0 0 0.48846 2 23695 23645;23695 1.8442 1.6526 1 766130 38800 7663 24559 24570 43971;43972 43972 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 516.6779174804688 2 516.677539 1031.34052 0.35074 0.00018122 0.32327 0.00016703 0.67402 0.00034825 516.6775798259192 99.617 0.52098 103.5 103.18 103.71 3.8839 124 73 2 0 0 0 0.48846 2 23557 23557;23590 1.8442 0 1 375370 38801 7663 24559 24570 43973;43974 43973 -0.1738921357723484 RSCCCRCSD 9 Unmodified _RSCCCRCSD_ 0 0 0 ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF ENST00000601807.5_2_19:49952902-49954779:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 516.677539 1031.34052 0.25186 0.00013013 1.3503 0.00069768 1.6022 0.00082781 516.6781554842838 99.423 0.044083 103.03 103 103.05 3.6065 -0.29168 0.00093901 NaN 1.8442 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 70608 38802 7663 24559 24570 -0.1738921357723484 RSCFPKWLY 9 Unmodified _RSCFPKWLY_ 0 0 0 L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|41|1|anti-sense L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|41|1|anti-sense L1MC2_dup5712|chr18:76830919-76831930:-|1.0120376935912847|0.0083863835099843|6.91|150.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 600.3065795898438 2 600.305144 1198.59573 NaN NaN NaN NaN NaN NaN NaN 43.409 1 47.097 46.597 47.597 3.6875 0 0 0 0.39036 1 8923 8923 2.9952 0.10602 1 38803 11277 24560 24571 43975 43975 0.004380822164421261 RSCWALCFW 9 Unmodified _RSCWALCFW_ 0 0 0 REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|255|1|anti-sense REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|255|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.2614135742188 2 586.262422 1170.51029 0.48319 0.00028328 -0.33966 -0.00019913 0.14354 8.415E-05 586.2617063119252 29.183 0.089832 32.733 32.675 32.765 3.5499 13 9 2 0 0 0 0.50015 1 4016 4016 0.6015 0 1 71113 + 38804 30177 24561 24572 43976 43976 -0.06814406240869175 RSDGEAELL 9 Unmodified _RSDGEAELL_ 0 0 0 ENST00000507994.1_1_4:100738070-100784201:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1 ENST00000507994.1_1_4:100738070-100784201:+|nuORF ENST00000507994.1_1_4:100738070-100784201:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 495.2488098144531 2 495.248546 988.482539 -0.1364 -6.7551E-05 0.13331 6.6021E-05 -0.0030902 -1.5304E-06 495.2485713432406 35.675 0.73706 39.086 38.802 39.539 3.4114 77 50 2 0 0 0 0.43982 1 6604 6604 5.7319 5.7319 1 113890 38805 1068 24562 24573 43977 43977 -0.012163146957504978 RSDGEAELL 9 Unmodified _RSDGEAELL_ 0 0 0 ENST00000507994.1_1_4:100738070-100784201:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1 ENST00000507994.1_1_4:100738070-100784201:+|nuORF ENST00000507994.1_1_4:100738070-100784201:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 495.2487487792969 2 495.248546 988.482539 -0.32293 -0.00015993 0.34006 0.00016841 0.017128 8.4824E-06 495.2486938235804 35.941 0.62909 39.195 38.837 39.466 3.2547 78 41 3 0 0 0 0.39745 1 6707 6707 8.1555 0.8663 1 112990 38806 1068 24562 24573 43978 43978 -0.012163146957504978 RSDGEAELL 9 Unmodified _RSDGEAELL_ 0 0 0 ENST00000507994.1_1_4:100738070-100784201:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1 ENST00000507994.1_1_4:100738070-100784201:+|nuORF ENST00000507994.1_1_4:100738070-100784201:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 495.248546 988.482539 -0.32293 -0.00015993 0.34006 0.00016841 0.017128 8.4824E-06 495.2486938235804 35.941 0.62909 39.195 38.837 39.466 3.2547 0.064326 -1.4879E-05 NaN 8.1555 78 41 3 NaN NaN NaN NaN 0 NaN NaN 0 112990 38807 1068 24562 24573 -0.012163146957504978 RSDPLTISR 9 Unmodified _RSDPLTISR_ 0 0 0 REV__L1PA16_dup7649|chr9:85864562-85866830:+|2.3224133599193557|0.2480594062318663|3.23|151.0|18|1|sense REV__L1PA16_dup7649|chr9:85864562-85866830:+|2.3224133599193557|0.2480594062318663|3.23|151.0|18|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 522.7932739257812 2 522.793455 1043.57236 0.10438 5.4568E-05 -0.43704 -0.00022848 -0.33266 -0.00017391 522.7931784460432 31.651 0.75884 31.651 31.338 32.096 0 113 54 3 0 0 0 0.079935 2 5295 5259;5295 38.615 1.0297 1 362250 + 38808 29411 24563 24574 43979;43980 43980 0.05231359703475391 RSEADGCD 8 Unmodified _RSEADGCD_ 0 0 0 REV__nc|ENSG00000065485|Q14554-2|PDIA5 REV__nc|ENSG00000065485|Q14554-2|PDIA5 MSMS UPN46_class_I_Rep_3 1 426.662109375 2 426.661249 851.307945 NaN NaN NaN NaN NaN NaN NaN 74.36 1 74.36 73.86 74.86 0 0 0 0 0.40746 1 17252 17252 0.69038 0 1 + 38809 17754 24564 24575 43981 43981 -0.1236563811258975 RSEDLLEQGY 10 Unmodified _RSEDLLEQGY_ 0 0 0 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 MSMS UPN48_class_I_Rep_1 5 605.2929077148438 2 605.290942 1208.56733 NaN NaN NaN NaN NaN NaN NaN 30.252 1 33.794 33.294 34.294 3.542 0 0 0 0.53105 1 4318 4318 6.7232 0 1 38810 757 24565 24576 43982 43982 -0.0286098894978295 RSENVFLYY 9 Unmodified _RSENVFLYY_ 0 0 0 REV__L1MC5a_dup11330|chr11:58539317-58540631:+|3.374986174448414|0.4830691977479876|2.8|151.0|66|1|anti-sense REV__L1MC5a_dup11330|chr11:58539317-58540631:+|3.374986174448414|0.4830691977479876|2.8|151.0|66|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 595.7957763671875 2 595.795663 1189.57677 0.51736 0.00030824 0.45216 0.0002694 0.96952 0.00057764 595.7954312263329 54.546 0.82039 57.865 57.49 58.311 3.3187 94 41 3 0 0 0 0.35081 1 12314 12314 10.824 0 1 331180 + 38811 27108 24566 24577 43983 43983 -0.010431758735876429 RSEPPGSQTP 10 Unmodified _RSEPPGSQTP_ 0 0 0 ENST00000265631.9_1_7:95926256-95951390:-|nuORF ENST00000265631.9_1_7:95926256-95951390:-|nuORF ENST00000265631.9_1_7:95926256-95951390:-|nuORF MSMS UPN46_class_I_Rep_3 1 528.2572631835938 2 528.259445 1054.50434 NaN NaN NaN NaN NaN NaN NaN 18.723 1 18.723 18.223 19.223 0 0 0 0 0.53105 1 1679 1679 1.1933 0.39971 1 38812 5998 24567 24578 43984 43984 -0.02073509947194907 RSERVKRPHR 10 Unmodified _RSERVKRPHR_ 0 0 0 REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF MSMS UPN48_class_I_Rep_3 7 440.9291687011719 3 440.928837 1319.76468 NaN NaN NaN NaN NaN NaN NaN 27.546 1 31.301 30.801 31.801 3.7555 0 0 0 0.53105 1 3627 3627 0.77653 0 1 + 38813 17527 24568 24579 43985 43985 0.11759119894145442 RSETRLFKVGK 11 Unmodified _RSETRLFKVGK_ 0 0 0 REV__L1MB3_dup10400|chr10:80189766-80190291:+|1.4474964102089027|0.0282452852850685|5.68|151.0|18|3|sense REV__L1MB3_dup10400|chr10:80189766-80190291:+|1.4474964102089027|0.0282452852850685|5.68|151.0|18|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 440.5948486328125 3 440.929733 1319.76737 0.042786 1.8865E-05 -1.2889 -0.00056832 -1.2461 -0.00054945 440.9292377328394 28.283 0.19627 32.026 31.963 32.16 3.7424 29 22 2 0 0 0 22.551 1 3821 3821 0.40827 0 1 80505 + 38814 25791 24569 24580 43986 43986 0.1202753050845331 RSEVQHPFY 9 Unmodified _RSEVQHPFY_ 0 0 0 MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|21|1|anti-sense MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|21|1|anti-sense MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 581.7858276367188 2 581.78563 1161.55671 NaN NaN NaN NaN NaN NaN NaN 21.576 1 25.251 24.751 25.751 3.6749 0 0 0 0.39326 1 2362 2362 2.3027 0 1 38815 16343 24570 24581 43987 43987 -0.017609268135629463 RSEVQHPFY 9 Unmodified _RSEVQHPFY_ 0 0 0 MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|21|1|anti-sense MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|21|1|anti-sense MLT1D_dup18041|chr17:39571363-39571847:-|1.4308092726742696|0.1819101207720533|2.98|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.7870483398438 2 581.78563 1161.55671 0.47797 0.00027808 0.2869 0.00016692 0.76488 0.000445 581.7858113929337 60.402 0.42812 63.919 63.548 63.976 3.5169 62 36 2 0 0 0 0.46434 1 13243 13243 4.3292 0 1 105320 38816 16343 24570 24581 43988 43988 -0.017609268135629463 RSFAQVLEL 9 Unmodified _RSFAQVLEL_ 0 0 0 ENST00000597917.1_1_19:17160685-17163834:-|nuORF;nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8 ENST00000597917.1_1_19:17160685-17163834:-|nuORF ENST00000597917.1_1_19:17160685-17163834:-|nuORF MSMS UPN48_class_I_Rep_1 5 531.8009033203125 2 531.800749 1061.58694 NaN NaN NaN NaN NaN NaN NaN 63.454 1 66.912 66.412 67.412 3.4578 0 0 0 0.31132 1 14287 14287 10.151 0 1 38817 2705 24571 24582 43989 43989 0.058614318515992636 RSFEPILRL 9 Unmodified _RSFEPILRL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN48_class_I_Rep_1 5 565.8375854492188 2 565.837665 1129.66078 0.48166 0.00027254 -0.41119 -0.00023267 0.070468 3.9873E-05 565.8372711523797 55.332 0.97142 58.84 58.41 59.381 3.5082 131 60 3 0 0 0 0.21414 3 11806 11762;11806;11848 19.362 3.2128 1 353050 38818 3874 24572 24583 43990;43991;43992 43991 0.1011340001393819 RSFEPILRL 9 Unmodified _RSFEPILRL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN48_class_I_Rep_2 6 565.8378295898438 2 565.837665 1129.66078 0.61279 0.00034674 -0.55209 -0.00031239 0.060701 3.4347E-05 565.8372621442334 55.376 0.59322 58.932 58.396 58.989 3.5559 80 32 3 0 0 0 0.2924 1 11813 11813 14.405 2.1647 1 346420 38819 3874 24572 24583 43993 43993 0.1011340001393819 RSFEPILRL 9 Unmodified _RSFEPILRL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS UPN48_class_I_Rep_3 7 565.8379516601562 2 565.837665 1129.66078 0.31887 0.00018043 -0.2906 -0.00016444 0.028265 1.5993E-05 565.837379595701 55.065 0.90335 58.635 58.367 59.27 3.5694 122 52 3 0 0 0 0.12795 3 11638 11638;11692;11772 28.495 11.382 1 608240 38820 3874 24572 24583 43994;43995;43996 43994 0.1011340001393819 RSFPHPHD 8 Unmodified _RSFPHPHD_ 0 0 0 REV__HSMAR2_dup1772|chr21:44101180-44102271:+|1.011264615351425|0.2164920475429817|2.22|151.0|24|3|sense REV__HSMAR2_dup1772|chr21:44101180-44102271:+|1.011264615351425|0.2164920475429817|2.22|151.0|24|3|sense MSMS UPN47_class_I_Rep_1 2 496.735595703125 2 496.738483 991.462413 NaN NaN NaN NaN NaN NaN NaN 26.95 1 30.717 30.217 31.217 3.7662 0 0 0 0.40643 1 3935 3935 2.0598 1.2661 1 + 38821 23962 24573 24584 43997 43997 -0.03366020845055573 RSFQRALEL 9 Unmodified _RSFQRALEL_ 0 0 0 nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 MULTI-MSMS UPN48_class_I_Rep_1 5 560.3173828125 2 560.317097 1118.61964 0.47298 0.00026502 -0.16036 -8.9855E-05 0.31262 0.00017517 560.3169619615554 41.493 0.82676 44.999 44.663 45.49 3.506 158 75 3 0 0 0 0.32682 1 7581 7581 12.241 0 1 489510 38822 4361 24574 24585 43998 43998 0.06507638974449037 RSFQRALEL 9 Unmodified _RSFQRALEL_ 0 0 0 nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 560.317097 1118.61964 -0.00013252 -7.4254E-08 0.19871 0.00011134 0.19858 0.00011127 560.3171409786208 41.161 0.54937 44.833 44.694 45.243 3.6719 -0.085891 0.00034661 NaN 12.241 52 40 2 NaN NaN NaN NaN 0 NaN NaN 0 118290 38823 4361 24574 24585 0.06507638974449037 RSFQSLRLL 9 Unmodified _RSFQSLRLL_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS UPN48_class_I_Rep_3 7 560.3170776367188 2 560.33529 1118.65603 0.33291 0.00018654 0.028631 1.6043E-05 0.36154 0.00020258 560.335368008282 41.135 0.43944 44.781 44.53 44.97 3.6458 59 44 2 0 0 0 0.47197 1 7441 7441 3.5965 0 1 70610 38824 1494 24575 24586 43999 43999 0.10144515871184012 RSFSHSFATY 10 Unmodified _RSFSHSFATY_ 0 0 0 REV__nc|ENSG00000143473|O95259-2|KCNH1 REV__nc|ENSG00000143473|O95259-2|KCNH1 MULTI-MSMS UPN47_class_I_Rep_3 4 601.7830810546875 2 601.783087 1201.55162 -0.068009 -4.0926E-05 -1.3454 -0.00080965 -1.4134 -0.00085057 601.7823948530929 37.509 0.51507 40.756 40.482 40.997 3.247 47 37 2 0 0 0 0.55148 1 7139 7139 5.2969 0.54088 1 68903 + 38825 19449 24576 24587 44000 44000 -0.041092306761811415 RSFSISSNL 9 Unmodified _RSFSISSNL_ 0 0 0 nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16;RUNX1-MECOM|4|fusion;RUNX1-MECOM|3|fusion;RUNX1-MECOM|2|fusion;RUNX1-MECOM|1|fusion nc|ENSG00000085276|Q03112-5|MECOM nc|ENSG00000085276|Q03112-5|MECOM MULTI-MSMS UPN48_class_I_Rep_1 5 505.7669982910156 2 505.766906 1009.51926 0.20924 0.00010582 -0.23559 -0.00011915 -0.026356 -1.333E-05 505.76667065184387 46.211 0.98137 49.731 49.337 50.318 3.5192 143 65 3 0 0 0 0.038999 3 8942 8942;8988;9030 53.404 3.8497 1 489660 38826 1262 24577 24588 44001;44002;44003 44001 0.014879819208090339 RSFSISSNL 9 Unmodified _RSFSISSNL_ 0 0 0 nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16;RUNX1-MECOM|4|fusion;RUNX1-MECOM|3|fusion;RUNX1-MECOM|2|fusion;RUNX1-MECOM|1|fusion nc|ENSG00000085276|Q03112-5|MECOM nc|ENSG00000085276|Q03112-5|MECOM MULTI-MSMS UPN48_class_I_Rep_2 6 505.76678466796875 2 505.766906 1009.51926 0.21742 0.00010996 -0.24188 -0.00012234 -0.024462 -1.2372E-05 505.7667260064603 45.885 0.97851 49.643 49.28 50.258 3.7579 150 67 3 0 0 0 0.023676 4 8918 8836;8875;8918;8956 61.09 11.536 1 509180 38827 1262 24577 24588 44004;44005;44006;44007 44006 0.014879819208090339 RSFSISSNL 9 Unmodified _RSFSISSNL_ 0 0 0 nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16;RUNX1-MECOM|4|fusion;RUNX1-MECOM|3|fusion;RUNX1-MECOM|2|fusion;RUNX1-MECOM|1|fusion nc|ENSG00000085276|Q03112-5|MECOM nc|ENSG00000085276|Q03112-5|MECOM MULTI-MSMS UPN48_class_I_Rep_3 7 505.7668762207031 2 505.766906 1009.51926 0.19103 9.6619E-05 -0.16296 -8.2418E-05 0.028079 1.4201E-05 505.76676109379605 46.103 0.84732 49.739 49.413 50.26 3.6369 139 55 3 0 0 0 0.0067715 4 8924 8846;8884;8924;8965 73.196 15.474 1 556440 38828 1262 24577 24588 44008;44009;44010;44011 44010 0.014879819208090339 RSFSRIKP 8 Unmodified _RSFSRIKP_ 0 0 0 L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|73|2|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|73|2|sense L1PA7_dup342|chr1:100199603-100206088:+|3.747634558145583|0.3747901093361931|3.32|151.0|73|2|sense MSMS UPN47_class_I_Rep_1 2 495.7964172363281 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 69.406 1 72.774 72.274 73.274 3.3678 0 0 0 0.40753 1 16815 16815 0.6015 0 1 38829 14803 24578 24589 44012 44012 0.08184288636903148 RSFVIKIIRII 11 Unmodified _RSFVIKIIRII_ 0 0 0 L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|26|2|sense L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|26|2|sense L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|26|2|sense MSMS UPN47_class_I_Rep_3 4 453.3054504394531 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 118.03 1 121.45 120.95 121.95 3.4238 0 0 0 0.38417 1 29098 29098 0.36667 0.27183 1 38830 11538 24579 24590 44013 44013 0.23275331858417303 RSFVTNYLL 9 Unmodified _RSFVTNYLL_ 0 0 0 REV__L1MEd_dup14015|chr10:21964510-21965267:-|1.7346058268759308|0.0178584813821347|6.6|151.0|31|3|sense REV__L1MEd_dup14015|chr10:21964510-21965267:-|1.7346058268759308|0.0178584813821347|6.6|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 556.821533203125 2 556.808574 1111.60259 NaN NaN NaN NaN NaN NaN NaN 63.863 1 67.337 66.837 67.837 3.4743 0 0 0 0.3377 1 14391 14391 8.7454 0 1 + 38831 28523 24580 24591 44014 44014 0.051257183686630015 RSFWYFMV 8 Unmodified _RSFWYFMV_ 0 0 0 REV__MLT2B3_dup2251|chr10:96152890-96153425:-|2.4256735775335896|0.3971629198442596|2.61|150.0|33|3|anti-sense REV__MLT2B3_dup2251|chr10:96152890-96153425:-|2.4256735775335896|0.3971629198442596|2.61|150.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 568.2733154296875 2 568.273312 1134.53207 NaN NaN NaN NaN NaN NaN NaN 20.446 1 24.094 23.594 24.594 3.648 0 0 0 0.40738 1 1758 1758 0.79363 0 1 + 38832 31819 24581 24592 44015 44015 -0.029812782206590782 RSGHVKAFAH 10 Unmodified _RSGHVKAFAH_ 0 0 0 ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENSG00000159131|ENST00000381815|GART ENST00000424203.5_1_21:34876433-34900844:-|nuORF ENST00000424203.5_1_21:34876433-34900844:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 555.3033447265625 2 555.301781 1108.58901 0.36161 0.0002008 1.8192 0.0010102 2.1809 0.001211 555.3030500351609 59.273 0.49242 62.797 62.412 62.905 3.5231 35 32 2 0 0 0 0.56374 1 12835 12835 1.1933 0.39971 1 93209 38833 3824 24582 24593 44016 44016 0.03905905380065633 RSGKERSS 8 Unmodified _RSGKERSS_ 0 0 0 REV__ENSG00000126461|ENST00000360565|SCAF1 REV__ENSG00000126461|ENST00000360565|SCAF1 MULTI-SECPEP UPN46_class_I_Rep_3 1 453.740966796875 2 453.741222 905.467892 -0.41029 -0.00018617 -0.17877 -8.1114E-05 -0.58906 -0.00026728 453.7410450985312 12.908 0.32519 12.908 12.807 13.132 0 49 31 2 0 0 0 0.72333 1 249 249 1.8442 0 1 139280 + 38834 18862 24583 24594 44017 44017 0.011376579467651027 RSGKVRFV 8 Unmodified _RSGKVRFV_ 0 0 0 REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 474.79095458984375 2 474.790518 947.566484 0.30626 0.00014541 -0.019155 -9.0945E-06 0.2871 0.00013631 474.7904238237729 107.8 0.28529 111.33 111.25 111.54 3.5345 75 33 4 0 0 0 0.82752 1 26082 26082 13.508 1.8676 1 90465000 + 38835 18291 24584 24595 44018 44018 0.09060305982472983 RSGKVRFV 8 Unmodified _RSGKVRFV_ 0 0 0 REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 474.7904968261719 2 474.790518 947.566484 0.21978 0.00010435 0.29847 0.00014171 0.51825 0.00024606 474.7905830433283 107.77 0.18213 111.44 111.37 111.56 3.6783 51 17 4 0 0 0 0.82752 1 25480 25480 13.508 2.684 1 127000000 + 38836 18291 24584 24595 44019 44019 0.09060305982472983 RSGKVRFV 8 Unmodified _RSGKVRFV_ 0 0 0 REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF REV__ENST00000588360.1_1_19:11471945-11474676:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 474.790518 947.566484 0.21929 0.00010412 -0.16878 -8.0137E-05 0.050505 2.3979E-05 474.79068219443377 107.97 0.11688 111.64 111.59 111.71 3.6746 0.15487 -0.00011389 NaN 13.508 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1133600 + 38837 18291 24584 24595 0.09060305982472983 RSGRTKGGIVF 11 Unmodified _RSGRTKGGIVF_ 0 0 0 REV__ENSG00000182359|ENST00000531837|KBTBD3 REV__ENSG00000182359|ENST00000531837|KBTBD3 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3429565429688 2 589.343646 1176.67274 0.54454 0.00032092 -1.0514 -0.00061966 -0.5069 -0.00029874 589.342910722566 87.092 0.10046 87.092 87.035 87.136 0 23 10 3 0 0 0 0.65271 1 20858 20858 2.9952 0 1 687150 + 38838 20756 24585 24596 44020 44020 0.09147016757128767 RSGRTKGGIVF 11 Unmodified _RSGRTKGGIVF_ 0 0 0 REV__ENSG00000182359|ENST00000531837|KBTBD3 REV__ENSG00000182359|ENST00000531837|KBTBD3 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.343646 1176.67274 0.54454 0.00032092 -1.0514 -0.00061966 -0.5069 -0.00029874 589.342910722566 87.092 0.10046 87.092 87.035 87.136 0 0.067756 1.3615E-05 NaN 2.9952 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 687150 + 38839 20756 24585 24596 0.09147016757128767 RSGRTKGGIVF 11 Unmodified _RSGRTKGGIVF_ 0 0 0 REV__ENSG00000182359|ENST00000531837|KBTBD3 REV__ENSG00000182359|ENST00000531837|KBTBD3 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 589.343646 1176.67274 0.44073 0.00025974 -1.06 -0.00062469 -0.61924 -0.00036495 589.3429151029496 83.464 0.88097 87.002 86.385 87.266 3.5386 -0.021941 3.5591E-06 NaN 2.9952 141 95 3 NaN NaN NaN NaN 0 NaN NaN 0 185720 + 38840 20756 24585 24596 0.09147016757128767 RSGRTKGGIVF 11 Unmodified _RSGRTKGGIVF_ 0 0 0 REV__ENSG00000182359|ENST00000531837|KBTBD3 REV__ENSG00000182359|ENST00000531837|KBTBD3 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 589.343646 1176.67274 0.42875 0.00025268 -1.0669 -0.0006288 -0.6382 -0.00037612 589.3428753966093 83.391 1.0122 86.978 86.311 87.323 3.5871 -0.045816 -4.6652E-06 NaN 2.9952 214 113 2 NaN NaN NaN NaN 0 NaN NaN 0 242860 + 38841 20756 24585 24596 0.09147016757128767 RSGVWSSCC 9 Unmodified _RSGVWSSCC_ 0 0 0 ENST00000257963.8_1_12:52388547-52388796:+|nuORF ENST00000257963.8_1_12:52388547-52388796:+|nuORF ENST00000257963.8_1_12:52388547-52388796:+|nuORF MSMS UPN47_class_I_Rep_3 4 492.7038879394531 2 492.704937 983.39532 NaN NaN NaN NaN NaN NaN NaN 30.614 1 33.926 33.426 34.426 3.3116 0 0 0 0.39428 1 5107 5107 2.0598 0 1 38842 5935 24586 24597 44021 44021 -0.09704135442677853 RSGYGSASSRN 11 Unmodified _RSGYGSASSRN_ 0 0 0 REV__ENSG00000137776|ENST00000380516|SLTM REV__ENSG00000137776|ENST00000380516|SLTM MULTI-MSMS UPN46_class_I_Rep_3 1 571.271484375 2 571.270875 1140.5272 -0.12693 -7.2513E-05 2.79 0.0015938 2.663 0.0015213 571.2716300028951 13.219 0.14508 13.219 13.132 13.277 0 25 14 3 0 0 0 0.67519 2 319 319;324 0.96228 0.2719 1 40267 + 38843 19243 24587 24598 44022;44023 44022 -0.03744490829694769 RSHFFIRK 8 Unmodified _RSHFFIRK_ 0 0 0 REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|63|2|anti-sense REV__L1ME2_dup585|chr1:112566597-112567766:-|1.6215938075999514|0.085938403943856|4.24|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_2 3 545.8191528320312 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 24.066 1 27.532 27.032 28.032 3.4655 0 0 0 0.40625 1 3131 3131 2.3027 0 1 + 38844 27866 24588 24599 44024 44024 0.07835683765142676 RSHFGLIL 8 Unmodified _RSHFGLIL_ 0 0 0 REV__HERVP71A-int_dup188|chr15:75066525-75067944:+|1.497060165921317|0.0228722820340919|6.03|151.0|52|1|anti-sense REV__HERVP71A-int_dup188|chr15:75066525-75067944:+|1.497060165921317|0.0228722820340919|6.03|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955322265625 2 471.779619 941.544686 NaN NaN NaN NaN NaN NaN NaN 47.375 1 50.724 50.224 51.224 3.3492 0 0 0 0.40581 1 10165 10165 2.8892 0 1 + 38845 23930 24589 24600 44025 44025 0.07157501233916719 RSHIKDLIKVA 11 Unmodified _RSHIKDLIKVA_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MSMS UPN47_class_I_Rep_2 3 640.3934326171875 2 640.395879 1278.7772 NaN NaN NaN NaN NaN NaN NaN 53.64 1 56.966 56.466 57.466 3.3266 0 0 0 0.38417 1 12062 12062 0.96228 0 1 38846 5831 24590 24601 44026 44026 0.14896718513841734 RSHLPGGK 8 Unmodified _RSHLPGGK_ 0 0 0 ENSG00000174236|ENST00000310791|REP15 ENSG00000174236|ENST00000310791|REP15 ENSG00000174236|ENST00000310791|REP15 MULTI-MSMS UPN48_class_I_Rep_2 6 426.2457275390625 2 426.245944 850.477334 0.079079 3.3707E-05 0.021559 9.1896E-06 0.10064 4.2897E-05 426.2459070253367 82.525 1.2335 86.194 85.517 86.751 3.669 290 157 2 0 0 0 0.82752 1 19709 19709 2.3027 0 1 422580 38847 4673 24591 24602 44027 44027 0.04611471022963087 RSHPFIFVFV 10 Unmodified _RSHPFIFVFV_ 0 0 0 L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|194|1|anti-sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|194|1|anti-sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|194|1|anti-sense MSMS UPN48_class_I_Rep_1 5 624.849853515625 2 624.848033 1247.68151 NaN NaN NaN NaN NaN NaN NaN 47.7 1 51.222 50.722 51.722 3.5219 0 0 0 0.53105 1 9455 9455 1.8442 0 1 38848 15050 24592 24603 44028 44028 0.06757990393589353 RSHPHIPGW 9 Unmodified _RSHPHIPGW_ 0 0 0 L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|47|2|anti-sense L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|47|2|anti-sense L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|47|2|anti-sense MSMS UPN47_class_I_Rep_2 3 543.781494140625 2 543.783225 1085.5519 NaN NaN NaN NaN NaN NaN NaN 43.025 1 46.383 45.883 46.883 3.358 0 0 0 0.38784 1 8833 8833 3.5965 1.2938 1 38849 15316 24593 24604 44029 44029 0.012542338343337178 RSHRKLLRQRR 11 Unmodified _RSHRKLLRQRR_ 0 0 0 L1MA4A_dup5746|chr18:9233152-9235131:-|3.501957393056787|0.3033553319804913|3.53|151.0|22|2|sense L1MA4A_dup5746|chr18:9233152-9235131:-|3.501957393056787|0.3033553319804913|3.53|151.0|22|2|sense L1MA4A_dup5746|chr18:9233152-9235131:-|3.501957393056787|0.3033553319804913|3.53|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 502.6498718261719 3 502.650186 1504.92873 0.1988 9.9928E-05 -0.011444 -5.7521E-06 0.18736 9.4176E-05 502.9845705981332 105.87 0.65805 109.5 109.11 109.76 3.6277 203 85 3 0 0 0 0.68081 1 25496 25496 0.45452 0 1 1602500 38850 9848 24594 24605 44030 44030 0.19646137384916074 RSIDLTVKL 9 Unmodified _RSIDLTVKL_ 0 0 0 ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|9|intron;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron MULTI-MSMS UPN48_class_I_Rep_1 5 522.8239135742188 2 522.824224 1043.63389 0.27413 0.00014332 -0.44824 -0.00023435 -0.17411 -9.1031E-05 522.8239112880029 48.801 0.61983 52.324 51.874 52.494 3.5239 68 42 2 0 0 0 0.24411 1 9798 9798 17.443 3.0373 1 219980 38851 2140 24595 24606 44031 44031 0.11382291402765077 RSIEEVLRI 9 Unmodified _RSIEEVLRI_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS UPN48_class_I_Rep_1 5 558.3348388671875 2 557.83258 1113.65061 0.48459 0.00027032 -0.0089595 -4.9979E-06 0.47563 0.00026532 557.8325858201221 51.985 0.34569 55.507 55.317 55.663 3.5227 47 34 3 0 0 0 0.27121 1 10770 10770 15.739 2.866 1 310030 38852 3152 24596 24607 44032 44032 0.09832792288693781 RSIEEVLRI 9 Unmodified _RSIEEVLRI_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS UPN48_class_I_Rep_2 6 557.8325805664062 2 557.83258 1113.65061 0.52191 0.00029114 -0.036009 -2.0087E-05 0.4859 0.00027105 557.8323095836058 52.087 0.1184 55.726 55.651 55.769 3.639 15 11 2 0 0 0 0.12306 1 10803 10803 29.437 6.6622 1 183020 38853 3152 24596 24607 44033 44033 0.09832792288693781 RSIEEVLRI 9 Unmodified _RSIEEVLRI_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS UPN48_class_I_Rep_3 7 557.833251953125 2 557.83258 1113.65061 0.28 0.00015619 0.040809 2.2764E-05 0.3208 0.00017896 557.8325908174322 51.854 0.54697 55.451 55.385 55.932 3.5979 77 62 2 0 0 0 0.22379 2 10717 10660;10717 18.721 2.9826 1 415680 38854 3152 24596 24607 44034;44035 44035 0.09832792288693781 RSIEYSPQL 9 Unmodified _RSIEYSPQL_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_1 5 546.787841796875 2 546.787838 1091.56112 0.45286 0.00024762 -0.26664 -0.0001458 0.18621 0.00010182 546.7877874598333 43.71 0.73442 47.22 46.878 47.612 3.5103 85 62 3 0 0 0 0.24411 1 8294 8294 17.443 1.2935 1 168770 38855 3266 24597 24608 44036 44036 0.019005376093446102 RSIEYSPQL 9 Unmodified _RSIEYSPQL_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_2 6 546.7876586914062 2 546.787838 1091.56112 0.41364 0.00022617 -0.18856 -0.0001031 0.22508 0.00012307 547.2891766416117 43.469 0.74648 47.231 46.855 47.602 3.7617 107 59 2 0 0 0 0.11648 2 8181 8141;8181 30.703 4.4353 1 188570 38856 3266 24597 24608 44037;44038 44038 0.019005376093446102 RSIEYSPQL 9 Unmodified _RSIEYSPQL_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_3 7 546.7883911132812 2 546.787838 1091.56112 0.37841 0.00020691 -0.13842 -7.5688E-05 0.23998 0.00013122 546.7877550157667 43.543 0.79721 47.182 46.889 47.686 3.6385 92 56 2 0 0 0 0.31677 1 8093 8093 12.873 1.3779 1 172580 38857 3266 24597 24608 44039 44039 0.019005376093446102 RSIKQIKVPSL 11 Unmodified _RSIKQIKVPSL_ 0 0 0 REV__AluSz_dup87611|chr17:49711863-49712164:+|2.008363999238495|0.4092272683862074|2.3|151.0|6|2|sense REV__AluSz_dup87611|chr17:49711863-49712164:+|2.008363999238495|0.4092272683862074|2.3|151.0|6|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 634.3779907226562 2 634.906079 1267.79761 0.72697 0.00046156 3.001 0.0019054 3.728 0.0023669 634.9081418540471 107.67 0.074753 107.67 107.62 107.69 0 18 11 2 0 0 0 22.551 1 26269 26269 2.7352 0 1 8228800 + 38858 17211 24598 24609 44040 44040 0.17441889173665004 RSIPAITRY 9 Unmodified _RSIPAITRY_ 0 0 0 nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1 nc|ENSG00000136986|Q9BUN8-2|DERL1 nc|ENSG00000136986|Q9BUN8-2|DERL1 MULTI-MSMS UPN48_class_I_Rep_3 7 538.8140258789062 2 538.81419 1075.61383 0.47094 0.00025375 -0.34784 -0.00018742 0.12311 6.6332E-05 538.8139583294226 35.734 0.78886 39.401 39.054 39.843 3.6667 123 77 2 0 0 0 0.41587 1 5857 5857 7.1017 0.89594 1 160720 38859 3002 24599 24610 44041 44041 0.07904540462777732 RSIPAITRY 9 Unmodified _RSIPAITRY_ 0 0 0 nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1 nc|ENSG00000136986|Q9BUN8-2|DERL1 nc|ENSG00000136986|Q9BUN8-2|DERL1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 538.81419 1075.61383 0.40647 0.00021901 -0.16825 -9.0657E-05 0.23822 0.00012836 538.8140151727374 35.946 0.8743 39.456 39.088 39.963 3.5101 -0.0011209 0.00010898 NaN 7.1017 135 88 2 NaN NaN NaN NaN 0 NaN NaN 0 178920 38860 3002 24599 24610 0.07904540462777732 RSKHRKIK 8 Unmodified _RSKHRKIK_ 0 0 0 Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense Looper_dup505|chr20:49143644-49145139:-|2.59230303234388|0.3845928814174006|2.75|151.0|96|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.842529296875 2 526.843616 1051.67268 NaN NaN NaN NaN NaN NaN NaN 25.608 1 29.377 28.877 29.877 3.769 0 0 0 0.40753 1 3140 3140 0.6015 0 1 38861 15492 24600 24611 44042 44042 0.14891061547768913 RSKKKKKKLL 10 Unmodified _RSKKKKKKLL_ 0 0 0 REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF MSMS UPN48_class_I_Rep_1 5 628.94921875 2 628.948082 1255.88161 NaN NaN NaN NaN NaN NaN NaN 29.14 1 32.69 32.19 33.19 3.5499 0 0 0 0.53105 1 4006 4006 0 0 1 + 38862 21838 24601 24612 44043 44043 0.2639046506124032 RSKKKKKKLL 10 Unmodified _RSKKKKKKLL_ 0 0 0 REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF MSMS UPN48_class_I_Rep_1 5 628.9481201171875 2 628.948082 1255.88161 NaN NaN NaN NaN NaN NaN NaN 29.162 1 32.712 32.212 33.212 3.5499 0 0 0 0.53105 1 4011 4011 0 0 1 + 38863 21838 24601 24612 44044 44044 0.2639046506124032 RSKKPKKHPK 10 Unmodified _RSKKPKKHPK_ 0 0 0 ENSG00000118960|ENST00000304031|HS1BP3 ENSG00000118960|ENST00000304031|HS1BP3 ENSG00000118960|ENST00000304031|HS1BP3 MSMS UPN48_class_I_Rep_2 6 617.4121704101562 2 617.398756 1232.78296 NaN NaN NaN NaN NaN NaN NaN 89.984 1 93.731 93.231 94.231 3.7471 0 0 0 0.53105 1 21450 21450 1.4819 0 1 38864 2266 24602 24613 44045 44045 0.17587861816173245 RSKPTASHIN 10 Unmodified _RSKPTASHIN_ 0 0 0 REV__Tigger1_dup8162|chr10:74236657-74237816:-|1.2223331368691783|0.0091028438895083|7.07|149.0|28|3|sense REV__Tigger1_dup8162|chr10:74236657-74237816:-|1.2223331368691783|0.0091028438895083|7.07|149.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 555.6660766601562 2 555.804354 1109.59415 NaN NaN NaN NaN NaN NaN NaN 44.421 1 44.421 43.921 44.921 0 0 0 0 0.53105 1 8952 8952 2.4985 0.43874 1 + 38865 32536 24603 24614 44046 44046 0.043741644520423506 RSKRKFFG 8 Unmodified _RSKRKFFG_ 0 0 0 nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM nc|ENSG00000151093|Q9NWU1-2|OXSM nc|ENSG00000151093|Q9NWU1-2|OXSM MSMS UPN48_class_I_Rep_3 7 513.3167724609375 2 513.303793 1024.59303 NaN NaN NaN NaN NaN NaN NaN 41.709 1 45.355 44.855 45.855 3.6458 0 0 0 0.40604 1 7564 7564 2.5775 0.51773 1 38866 3575 24604 24615 44047 44047 0.08171994873805488 RSKRWMNRLKR 11 Unmodified _RSKRWMNRLKR_ 0 0 0 REV__L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense REV__L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.9683532714844 3 510.968527 1529.88375 0.3588 0.00018334 0.22869 0.00011685 0.5875 0.00030019 510.9685826764008 97.455 0.32341 101.24 101.13 101.45 3.7861 58 43 2 0 0 0 0.68478 1 24137 24137 0.094841 0 1 147700 + 38867 24587 24605 24616 44048 44048 0.14000570527355194 RSKRWMNRLKR 11 Unmodified _RSKRWMNRLKR_ 0 0 0 REV__L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense REV__L1M4c_dup2526|chr11:67184654-67185325:+|3.2752273840334385|0.0752721573388723|5.44|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 510.6347351074219 3 510.968527 1529.88375 0.22891 0.00011696 0.43832 0.00022397 0.66723 0.00034093 510.9686970038946 98.076 0.21411 101.68 101.63 101.84 3.6065 45 24 2 0 0 0 22.551 1 23650 23650 0.094841 0 1 155570 + 38868 24587 24605 24616 44049 44049 0.14000570527355194 RSKTRTRKY 9 Unmodified _RSKTRTRKY_ 0 0 0 REV__Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|72|3|sense REV__Tigger1_dup7145|chr9:123848257-123850572:+|1.656015913360151|0.0129504031915465|7.0|151.0|72|3|sense MSMS UPN48_class_I_Rep_3 7 598.35595703125 2 598.354545 1194.69454 NaN NaN NaN NaN NaN NaN NaN 110.5 1 114.17 113.67 114.67 3.67 0 0 0 0.40098 1 26221 26221 0.45834 0 1 + 38869 32516 24606 24617 44050 44050 0.10497821505691718 RSKTTIRER 9 Unmodified _RSKTTIRER_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS UPN46_class_I_Rep_3 1 573.8389282226562 2 573.838728 1145.6629 -0.11848 -6.7989E-05 -0.10046 -5.765E-05 -0.21895 -0.00012564 573.8386137211326 12.77 0.3543 12.77 12.699 13.054 0 49 28 2 0 0 0 0.44742 1 199 199 5.2969 0 1 144780 38870 2190 24607 24618 44051 44051 0.09589828751745699 RSKVGKKV 8 Unmodified _RSKVGKKV_ 0 0 0 LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|31|2|anti-sense LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|31|2|anti-sense LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 451.30279541015625 2 451.300719 900.586885 NaN NaN NaN NaN NaN NaN NaN 46.391 1 50.028 49.528 50.528 3.6369 0 0 0 0.40753 1 8991 8991 0.6015 0 1 38871 15700 24608 24619 44052 44052 0.13261476642287562 RSKVIRNRV 9 Unmodified _RSKVIRNRV_ 0 0 0 REV__Charlie7_dup2815|chr12:104466826-104467173:-|3.158976185703445|0.0190613206399808|7.37|151.0|28|3|anti-sense REV__Charlie7_dup2815|chr12:104466826-104467173:-|3.158976185703445|0.0190613206399808|7.37|151.0|28|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.3591918945312 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 67.007 1 70.515 70.015 71.015 3.5077 0 0 0 0.4007 1 15264 15264 0.52476 0 1 + 38872 17396 24609 24620 44053 44053 0.14642429230934795 RSLAEGNLLY 10 Unmodified _RSLAEGNLLY_ 0 0 0 ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENST00000543590.1_1_12:123355407-123355842:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 568.3088989257812 2 568.308938 1134.60332 0.45866 0.00026066 -0.088619 -5.0363E-05 0.37004 0.0002103 568.3088348630247 50.438 0.63786 54.132 53.777 54.414 3.6946 70 39 2 0 0 0 0.41414 2 10259 10259;10278 18.373 2.224 1 210560 38873 3153 24610 24621 44054;44055 44054 0.041405130177281535 RSLAEGNLLY 10 Unmodified _RSLAEGNLLY_ 0 0 0 ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENST00000543590.1_1_12:123355407-123355842:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 568.3087768554688 2 568.308938 1134.60332 0.34179 0.00019424 -0.0086953 -4.9416E-06 0.3331 0.0001893 568.3088933778804 50.536 0.6533 54.157 53.784 54.438 3.621 68 40 2 0 0 0 0.41414 2 10265 10237;10265 18.373 2.224 1 168980 38874 3153 24610 24621 44056;44057 44057 0.041405130177281535 RSLCCAPLLL 10 Unmodified _RSLCCAPLLL_ 0 0 0 nc|ENSG00000163421|Q9HC23-2|PROK2;ENSG00000163421|ENST00000295619|PROK2 nc|ENSG00000163421|Q9HC23-2|PROK2 nc|ENSG00000163421|Q9HC23-2|PROK2 MSMS UPN47_class_I_Rep_2 3 544.8019409179688 2 544.80138 1087.58821 NaN NaN NaN NaN NaN NaN NaN 20.602 1 24.009 23.509 24.509 3.4074 0 0 0 0.53105 1 2168 2168 2.9952 0.69251 1 38875 3999 24611 24622 44058 44058 0.04791606624507949 RSLDDALKL 9 Unmodified _RSLDDALKL_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MULTI-MSMS UPN48_class_I_Rep_1 5 515.79833984375 2 515.798206 1029.58186 0.24855 0.0001282 -0.16842 -8.6869E-05 0.080137 4.1334E-05 515.7981909686131 45.858 1.5187 49.374 48.926 50.445 3.5162 333 102 4 0 0 0 0.0055493 8 8938 8781;8821;8860;8897;8938;8975;9018;9057 139.38 52.12 1 10162000 38876 4832 24612 24623 44059;44060;44061;44062;44063;44064;44065;44066 44063 0.06825127988986424 RSLDDALKL 9 Unmodified _RSLDDALKL_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MULTI-MSMS UPN48_class_I_Rep_2 6 515.7982788085938 2 515.798206 1029.58186 0.25721 0.00013267 -0.1999 -0.00010311 0.05731 2.956E-05 515.7982180109855 45.541 1.5296 49.299 48.84 50.37 3.7579 385 108 5 0 0 0 0.0068495 8 8842 8686;8726;8769;8807;8842;8880;8923;8960 124.95 43.063 1 13464000 38877 4832 24612 24623 44067;44068;44069;44070;44071;44072;44073;44074 44071 0.06825127988986424 RSLDDALKL 9 Unmodified _RSLDDALKL_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MSMS UPN48_class_I_Rep_2 6 515.75537109375 2 515.798206 1029.58186 NaN NaN NaN NaN NaN NaN NaN 47.541 1 51.277 50.777 51.777 3.7361 0 0 0 0.39036 1 9401 9401 2.9952 0 1 38878 4832 24612 24623 44075 44075 0.06825127988986424 RSLDDALKL 9 Unmodified _RSLDDALKL_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2;nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MULTI-MSMS UPN48_class_I_Rep_3 7 515.7982788085938 2 515.798206 1029.58186 0.26361 0.00013597 -0.19016 -9.8085E-05 0.073449 3.7885E-05 515.7982244580265 45.791 1.5195 49.428 48.913 50.433 3.6369 358 103 5 0 0 0 0.0057802 9 8861 8672;8709;8749;8787;8824;8861;8905;8944;8983 135.86 45.504 1 11098000 38879 4832 24612 24623 44076;44077;44078;44079;44080;44081;44082;44083;44084 44081 0.06825127988986424 RSLDYVAQL 9 Unmodified _RSLDYVAQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.24|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS UPN48_class_I_Rep_1 5 532.79052734375 2 532.790381 1063.56621 0.33768 0.00017991 0.12344 6.5766E-05 0.46112 0.00024568 532.7903566720893 50.745 0.74963 54.269 53.961 54.711 3.5246 106 47 3 0 0 0 0.053261 4 10399 10320;10360;10399;10442 47.594 9.9411 1 806680 38880 1815 24613 24624 44085;44086;44087;44088 44087 0.036968414719467546 RSLDYVAQL 9 Unmodified _RSLDYVAQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.24|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS UPN48_class_I_Rep_2 6 532.79052734375 2 532.790381 1063.56621 0.41206 0.00021954 0.1347 7.1767E-05 0.54676 0.00029131 532.7903238758103 50.544 0.87962 54.212 53.919 54.798 3.6679 112 53 3 0 0 0 0.034404 3 10323 10282;10323;10364 55.235 18.728 1 647750 38881 1815 24613 24624 44089;44090;44091 44090 0.036968414719467546 RSLDYVAQL 9 Unmodified _RSLDYVAQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.24|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS UPN48_class_I_Rep_3 7 532.79052734375 2 532.790381 1063.56621 0.40881 0.00021781 -3.7102 -0.0019768 -3.3014 -0.001759 532.7903293267892 50.781 0.94012 54.391 53.998 54.938 3.6105 210 63 5 0 0 0 0.061655 2 10293 10293;10334 43.982 14.141 1 847130 38882 1815 24613 24624 44092;44093 44092 0.036968414719467546 RSLDYVAQL 9 Unmodified _RSLDYVAQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.24|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MATCH UPN47_class_I_Rep_1 2 2 532.790381 1063.56621 0.22021 0.00011732 0.29969 0.00015967 0.5199 0.000277 532.7905747013032 50.263 0.69595 53.892 53.561 54.257 3.6285 -0.2393 0.000222 NaN 55.235 49 34 2 NaN NaN NaN NaN 0 NaN NaN 0 114110 38883 1815 24613 24624 0.036968414719467546 RSLDYVAQL 9 Unmodified _RSLDYVAQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.24|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MATCH UPN47_class_I_Rep_2 3 2 532.790381 1063.56621 0.32432 0.0001728 0.21116 0.0001125 0.53548 0.0002853 532.7905865025086 50.592 0.71452 53.931 53.618 54.332 3.3386 -0.2002 0.00012766 NaN 55.235 57 37 2 NaN NaN NaN NaN 0 NaN NaN 0 104760 38884 1815 24613 24624 0.036968414719467546 RSLDYVAQL 9 Unmodified _RSLDYVAQL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;SETX|p.I2020Nfs*4|1|0.24|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MATCH UPN47_class_I_Rep_3 4 2 532.790381 1063.56621 0.48057 0.00025604 -0.3022 -0.00016101 0.17837 9.5032E-05 532.7902742630583 50.875 0.61137 54.091 53.74 54.352 3.2163 -0.039827 -0.00041937 NaN 55.235 51 31 2 NaN NaN NaN NaN 0 NaN NaN 0 82809 38885 1815 24613 24624 0.036968414719467546 RSLEISQSY 9 Unmodified _RSLEISQSY_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS UPN48_class_I_Rep_2 6 541.7774047851562 2 541.77747 1081.54039 0.44538 0.0002413 -0.25569 -0.00013853 0.18969 0.00010277 541.7772393573616 37.595 0.36012 41.311 41.186 41.546 3.7164 52 37 2 0 0 0 0.24411 1 6440 6440 17.443 4.57 1 80697 38886 3538 24614 24625 44094 44094 0.0028794722968541464 RSLEISQSY 9 Unmodified _RSLEISQSY_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS UPN48_class_I_Rep_3 7 541.7775268554688 2 541.77747 1081.54039 NaN NaN NaN NaN NaN NaN NaN 37.593 1 41.256 40.756 41.756 3.663 0 0 0 0.31132 1 6356 6356 10.151 1.1743 1 38887 3538 24614 24625 44095 44095 0.0028794722968541464 RSLEISQSY 9 Unmodified _RSLEISQSY_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MATCH UPN48_class_I_Rep_1 5 2 541.77747 1081.54039 0.42797 0.00023187 -0.10334 -5.5987E-05 0.32463 0.00017588 541.7775461468756 37.691 0.039066 41.196 41.18 41.219 3.5052 -0.057772 0.00015661 NaN 17.443 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 40946 38888 3538 24614 24625 0.0028794722968541464 RSLFCAQMGLA 11 Unmodified _RSLFCAQMGLA_ 0 0 0 REV__ENSG00000111331|ENST00000228928|OAS3 REV__ENSG00000111331|ENST00000228928|OAS3 MSMS UPN48_class_I_Rep_2 6 598.7988891601562 2 598.799368 1195.58418 NaN NaN NaN NaN NaN NaN NaN 38.384 1 42.1 41.6 42.6 3.7164 0 0 0 0.38417 1 6683 6683 2.4985 0.84587 1 + 38889 18453 24615 24626 44096 44096 -0.005784828691957955 RSLGVHLSF 9 Unmodified _RSLGVHLSF_ 0 0 0 ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000493606.1_1_22:43243518-43253221:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENSG00000242247.11,ARFGAP3,chr22,-,I15.1,42799161,42807072|32|8.36|4|intron;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247.11,ARFGAP3,chr22,-,I15.1,42799161,42807072|32|8.36|3|intron;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000242247|ENST00000263245|ARFGAP3;ENSG00000149182|ENST00000524782|ARFGAP2 ENST00000528072.1_1_11:47198065-47198404:-|nuORF ENST00000528072.1_1_11:47198065-47198404:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 508.2876281738281 2 508.287808 1014.56106 0.21117 0.00010734 -0.33525 -0.0001704 -0.12408 -6.3069E-05 508.287571502724 48.431 1.4095 51.955 51.47 52.88 3.5239 239 101 3 0 0 0 0.0060693 7 9688 9606;9647;9688;9735;9760;9778;9848 82.529 4.5487 1 1219100 38890 3530 24616 24627 44097;44098;44099;44100;44101;44102;44103 44099 0.05436582399988765 RSLGVHLSF 9 Unmodified _RSLGVHLSF_ 0 0 0 ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000493606.1_1_22:43243518-43253221:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENSG00000242247.11,ARFGAP3,chr22,-,I15.1,42799161,42807072|32|8.36|4|intron;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247.11,ARFGAP3,chr22,-,I15.1,42799161,42807072|32|8.36|3|intron;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000242247|ENST00000263245|ARFGAP3;ENSG00000149182|ENST00000524782|ARFGAP2 ENST00000528072.1_1_11:47198065-47198404:-|nuORF ENST00000528072.1_1_11:47198065-47198404:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 508.287808 1014.56106 0.2177 0.00011066 -0.38752 -0.00019697 -0.16982 -8.6316E-05 508.2875367939428 48.104 1.5477 51.84 51.396 52.943 3.7361 -0.063062 -2.1665E-05 NaN 82.529 241 107 3 NaN NaN NaN NaN 0 NaN NaN 0 971230 38891 3530 24616 24627 0.05436582399988765 RSLGVHLSF 9 Unmodified _RSLGVHLSF_ 0 0 0 ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000493606.1_1_22:43243518-43253221:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENSG00000242247.11,ARFGAP3,chr22,-,I15.1,42799161,42807072|32|8.36|4|intron;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247.11,ARFGAP3,chr22,-,I15.1,42799161,42807072|32|8.36|3|intron;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000242247|ENST00000263245|ARFGAP3;ENSG00000149182|ENST00000524782|ARFGAP2 ENST00000528072.1_1_11:47198065-47198404:-|nuORF ENST00000528072.1_1_11:47198065-47198404:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 508.287808 1014.56106 0.18945 9.6293E-05 -0.36515 -0.0001856 -0.1757 -8.9307E-05 508.2875597893335 48.28 0.94398 51.914 51.404 52.348 3.6339 0.010857 1.0789E-06 NaN 82.529 173 65 4 NaN NaN NaN NaN 0 NaN NaN 0 1059000 38892 3530 24616 24627 0.05436582399988765 RSLLTRTQ 8 Unmodified _RSLLTRTQ_ 0 0 0 L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|84|2|sense L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|84|2|sense L1PB1_dup534|chr1:173758361-173764856:+|14.57841317292963|0.2899295764599452|5.65|151.0|84|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.79156494140625 2 487.790715 973.566878 0.26886 0.00013115 1.1373 0.00055476 1.4062 0.00068591 487.7910751512322 75.072 0.50481 78.385 77.984 78.489 3.3127 99 57 2 0 0 0 0.82752 1 18459 18459 1.8442 0 1 230380 38893 15148 24617 24628 44104 44104 0.07903680911670108 RSLNKIWQTK 10 Unmodified _RSLNKIWQTK_ 0 0 0 L1PA7_dup1252|chr2:97892903-97896689:-|1.97755342390238|0.2318852433591582|3.09|151.0|92|3|sense L1PA7_dup1252|chr2:97892903-97896689:-|1.97755342390238|0.2318852433591582|3.09|151.0|92|3|sense L1PA7_dup1252|chr2:97892903-97896689:-|1.97755342390238|0.2318852433591582|3.09|151.0|92|3|sense MSMS UPN48_class_I_Rep_1 5 637.3709106445312 2 637.372404 1272.73025 NaN NaN NaN NaN NaN NaN NaN 103.13 1 106.75 106.25 107.25 3.6164 0 0 0 0.53105 1 24862 24862 1.1933 0 1 38894 14752 24618 24629 44105 44105 0.10479858962662547 RSLPFFSAR 9 Unmodified _RSLPFFSAR_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS UPN46_class_I_Rep_3 1 540.8012084960938 2 540.801083 1079.58761 0.30485 0.00016486 0.035405 1.9147E-05 0.34026 0.00018401 540.8010334057744 51.269 0.93691 51.269 50.846 51.783 0 228 101 3 0 0 0 0.0098153 5 10897 10826;10864;10897;10932;10970 107.56 58.009 1 821980 38895 4452 24619 24630 44106;44107;44108;44109;44110 44108 0.051002712913032155 RSLPIINEF 9 Unmodified _RSLPIINEF_ 0 0 0 REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 544.2515258789062 2 544.808574 1087.60259 0.46331 0.00025241 -0.17807 -9.7015E-05 0.28523 0.0001554 544.8083608245854 73.243 0.19569 76.725 76.614 76.81 3.4812 30 15 3 0 0 0 0.11021 1 17251 17251 14.838 0.93222 1 293740 + 38896 28626 24620 24631 44111 44111 0.06229718368649628 RSLPIINEF 9 Unmodified _RSLPIINEF_ 0 0 0 REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 544.8084716796875 2 544.808574 1087.60259 0.47722 0.00025999 -0.62232 -0.00033904 -0.1451 -7.9051E-05 545.3099074210222 72.853 0.28136 76.418 76.265 76.546 3.5645 29 22 2 0 0 0 0.43153 1 17088 17088 6.2058 1.8765 1 150260 + 38897 28626 24620 24631 44112 44112 0.06229718368649628 RSLPIINEF 9 Unmodified _RSLPIINEF_ 0 0 0 REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_2 6 544.8084106445312 2 544.808574 1087.60259 NaN NaN NaN NaN NaN NaN NaN 73.308 1 76.886 76.386 77.386 3.5779 0 0 0 0.22485 1 17209 17209 14.838 2.5976 1 + 38898 28626 24620 24631 44113 44113 0.06229718368649628 RSLPIINEF 9 Unmodified _RSLPIINEF_ 0 0 0 REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 544.2509765625 2 544.808574 1087.60259 0.47722 0.00025999 -0.62232 -0.00033904 -0.1451 -7.9051E-05 545.3099074210222 72.853 0.28136 76.418 76.265 76.546 3.5645 29 22 2 0 0 0 0.11021 1 17061 17061 14.838 5.4551 1 150260 + 38899 28626 24620 24631 44114 44114 0.06229718368649628 RSLPIINEF 9 Unmodified _RSLPIINEF_ 0 0 0 REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense REV__L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|51|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 544.2506103515625 2 544.808574 1087.60259 0.53962 0.00029399 -0.32255 -0.00017573 0.21706 0.00011826 544.808364379764 73.144 0.083267 76.681 76.634 76.717 3.5373 12 7 2 0 0 0 0.118 1 17102 17102 10.074 3.3508 1 233430 + 38900 28626 24620 24631 44115 44115 0.06229718368649628 RSLQLNFVAI 10 Unmodified _RSLQLNFVAI_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|72|3|sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|72|3|sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|72|3|sense MSMS UPN48_class_I_Rep_2 6 580.8419189453125 2 580.842948 1159.67134 NaN NaN NaN NaN NaN NaN NaN 71.343 1 74.893 74.393 75.393 3.5505 0 0 0 0.53105 1 16639 16639 5.2969 0.76802 1 38901 15377 24621 24632 44116 44116 0.09789382668373037 RSLTVQPYR 9 Unmodified _RSLTVQPYR_ 0 0 0 ENST00000567838.1_1_15:71952820-72059070:+|nuORF;nc|ENSG00000187720|Q6ZMP0-4|THSD4;ENSG00000187720|ENST00000261862|THSD4 ENST00000567838.1_1_15:71952820-72059070:+|nuORF ENST00000567838.1_1_15:71952820-72059070:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 560.3170166015625 2 560.317097 1118.61964 0.47298 0.00026502 -0.16036 -8.9855E-05 0.31262 0.00017517 560.3169619615554 41.493 0.82676 44.999 44.663 45.49 3.506 158 75 3 0 0 0 0.47493 1 7662 7662 3.2813 0.28607 1 489510 38902 5203 24622 24633 44117 44117 0.06507638974449037 RSLVATMGYL 10 Unmodified _RSLVATMGYL_ 0 0 0 REV__ENSG00000177646|ENST00000308982|ACAD9 REV__ENSG00000177646|ENST00000308982|ACAD9 MSMS UPN47_class_I_Rep_2 3 556.2633666992188 2 555.802434 1109.59032 NaN NaN NaN NaN NaN NaN NaN 74.835 1 78.148 77.648 78.648 3.3127 0 0 0 0.53105 1 18452 18452 1.4819 0 1 + 38903 20625 24623 24634 44118 44118 0.03990358633973301 RSLVPQLR 8 Unmodified _RSLVPQLR_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS UPN46_class_I_Rep_3 1 484.80340576171875 2 484.803626 967.592698 NaN NaN NaN NaN NaN NaN NaN 41.275 1 41.275 40.775 41.775 0 0 0 0 0.35253 1 8076 8076 21.537 4.4241 1 38904 1202 24624 24635 44119 44119 0.10760575153949503 RSLVPQLR 8 Unmodified _RSLVPQLR_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-SECPEP UPN46_class_I_Rep_3 1 484.80389404296875 2 484.803626 967.592698 0.26491 0.00012843 -0.4435 -0.00021501 -0.17859 -8.6581E-05 484.8033407334212 41.14 0.36457 41.14 41.038 41.402 0 43 34 2 0 0 0 0.72333 1 8038 8038 45.7 0 1 565710 38905 1202 24624 24635 44120 44120 0.10760575153949503 RSMLQRSIF 9 Unmodified _RSMLQRSIF_ 0 0 0 REV__L1PBa_dup30|chr1:92327007-92329543:-|2.3049922501264994|0.2463959325272045|3.23|151.0|174|3|anti-sense REV__L1PBa_dup30|chr1:92327007-92329543:-|2.3049922501264994|0.2463959325272045|3.23|151.0|174|3|anti-sense MSMS UPN48_class_I_Rep_2 6 569.3060302734375 2 569.3135 1136.61245 NaN NaN NaN NaN NaN NaN NaN 59.878 1 63.365 62.865 63.865 3.4868 0 0 0 0.078496 1 13175 13175 29.082 3.6823 1 + 38906 30650 24625 24636 44121 44121 0.049605831023882274 RSMNACFL 8 Unmodified _RSMNACFL_ 0 0 0 REV__Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|47|2|sense REV__Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|47|2|sense MSMS UPN48_class_I_Rep_2 6 470.7721862792969 2 471.220223 940.425892 NaN NaN NaN NaN NaN NaN NaN 87.174 1 90.891 90.391 91.391 3.7171 0 0 0 0.40738 1 20736 20736 0.79363 0 1 + 38907 32660 24626 24637 44122 44122 -0.0467035705763692 RSMPVPLY 8 Unmodified _RSMPVPLY_ 0 0 0 REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|168|3|anti-sense REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|168|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.7867736816406 2 481.760038 961.505523 NaN NaN NaN NaN NaN NaN NaN 25.97 1 29.732 29.232 30.232 3.7624 0 0 0 0.40738 1 3646 3646 0.79363 0 1 + 38908 29215 24627 24638 44123 44123 0.023230328880231355 RSNFIFWHV 9 Unmodified _RSNFIFWHV_ 0 0 0 L1MB5_dup3040|chr7:66703272-66704111:-|2.478970986971637|0.414307231397695|2.58|151.0|52|3|anti-sense L1MB5_dup3040|chr7:66703272-66704111:-|2.478970986971637|0.414307231397695|2.58|151.0|52|3|anti-sense L1MB5_dup3040|chr7:66703272-66704111:-|2.478970986971637|0.414307231397695|2.58|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_3 4 603.3124389648438 2 603.314358 1204.61416 NaN NaN NaN NaN NaN NaN NaN 38.592 1 41.834 41.334 42.334 3.2414 0 0 0 0.40038 1 7531 7531 0.6015 0.076735 1 38909 10606 24628 24639 44124 44124 0.020039601826738362 RSNHRLNCT 9 Unmodified _RSNHRLNCT_ 0 0 0 HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|282|2|anti-sense;HERVK-int_dup119|chr8:8198204-8205586:+|1.7547009766734902|0.3406270795681891|2.36|151.0|350|2|anti-sense HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|282|2|anti-sense HERVK-int_dup120|chr8:12217574-12223144:-|1.4274218677033352|0.4018421352359405|1.83|149.0|282|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.7720336914062 2 550.772531 1099.53051 0.21929 0.00012078 -0.64172 -0.00035344 -0.42242 -0.00023266 550.7718689714392 45.034 1.3853 48.278 47.893 49.279 3.2441 256 87 4 0 0 0 0.16559 1 9496 9496 24.021 3.5669 1 1444100 38910 8245 24629 24640 44125 44125 -0.015275192567060003 RSNIFSKL 8 Unmodified _RSNIFSKL_ 0 0 0 REV__L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|186|1|anti-sense REV__L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|186|1|anti-sense MSMS UPN47_class_I_Rep_1 2 482.7712707519531 2 482.782359 963.550165 NaN NaN NaN NaN NaN NaN NaN 59.909 1 63.307 62.807 63.807 3.3982 0 0 0 0.40331 1 13946 13946 6.2058 1.4498 1 + 38911 29394 24630 24641 44126 44126 0.06693180025706624 RSNKLPMRKK 10 Unmodified _RSNKLPMRKK_ 0 0 0 REV__nc|ENSG00000170703|Q8N841-4|TTLL6 REV__nc|ENSG00000170703|Q8N841-4|TTLL6 MSMS UPN46_class_I_Rep_3 1 629.3838500976562 2 629.382249 1256.74994 NaN NaN NaN NaN NaN NaN NaN 63.339 1 63.339 62.839 63.839 0 0 0 0 0.53105 1 14218 14218 1.4819 0 1 + 38912 32056 24631 24642 44127 44127 0.13183911701798934 RSNKLPMRKK 10 Unmodified _RSNKLPMRKK_ 0 0 0 REV__nc|ENSG00000170703|Q8N841-4|TTLL6 REV__nc|ENSG00000170703|Q8N841-4|TTLL6 MSMS UPN47_class_I_Rep_2 3 629.38232421875 2 629.382249 1256.74994 NaN NaN NaN NaN NaN NaN NaN 60.686 1 63.952 63.452 64.452 3.2654 0 0 0 0.53105 1 14215 14215 1.4819 0 1 + 38913 32056 24631 24642 44128 44128 0.13183911701798934 RSNKLPMRKK 10 Unmodified _RSNKLPMRKK_ 0 0 0 REV__nc|ENSG00000170703|Q8N841-4|TTLL6 REV__nc|ENSG00000170703|Q8N841-4|TTLL6 MSMS UPN48_class_I_Rep_2 6 629.3834228515625 2 629.382249 1256.74994 NaN NaN NaN NaN NaN NaN NaN 60.089 1 63.575 63.075 64.075 3.4868 0 0 0 0.53105 1 13238 13238 1.4819 0 1 + 38914 32056 24631 24642 44129 44129 0.13183911701798934 RSNSLEHHH 9 Unmodified _RSNSLEHHH_ 0 0 0 REV__HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|11|2|sense REV__HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 558.7677612304688 2 558.768303 1115.52205 NaN NaN NaN NaN NaN NaN NaN 34.431 1 37.695 37.195 38.195 3.2639 0 0 0 0.39428 1 6260 6260 2.0598 0 1 + 38915 23432 24632 24643 44130 44130 -0.031087499016848597 RSNYYYGH 8 Unmodified _RSNYYYGH_ 0 0 0 REV__THE1C_dup7040|chr11:86052047-86052394:+|1.905552557839078|0.080331067189115|4.57|151.0|25|3|anti-sense REV__THE1C_dup7040|chr11:86052047-86052394:+|1.905552557839078|0.080331067189115|4.57|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_2 6 530.2366943359375 2 530.235773 1058.45699 NaN NaN NaN NaN NaN NaN NaN 22.753 1 26.397 25.897 26.897 3.6432 0 0 0 0.40738 1 2374 2374 0.79363 0 1 + 38916 32282 24633 24644 44131 44131 -0.06989744427528422 RSPEKLYK 8 Unmodified _RSPEKLYK_ 0 0 0 REV__L1MB3_dup8962|chr9:137733677-137735605:+|5.855528483377241|0.180526941475154|5.02|151.0|18|1|sense REV__L1MB3_dup8962|chr9:137733677-137735605:+|5.855528483377241|0.180526941475154|5.02|151.0|18|1|sense MSMS UPN47_class_I_Rep_1 2 510.7953186035156 2 510.795466 1019.57638 NaN NaN NaN NaN NaN NaN NaN 32.329 1 36.042 35.542 36.542 3.7131 0 0 0 0.40625 1 5550 5550 2.3027 0 1 + 38917 25929 24634 24645 44132 44132 0.06737449197191836 RSPLTTGVYV 10 Unmodified _RSPLTTGVYV_ 0 0 0 ENSG00000163599|ENST00000648405|CTLA4 ENSG00000163599|ENST00000648405|CTLA4 ENSG00000163599|ENST00000648405|CTLA4 MULTI-MSMS UPN47_class_I_Rep_1 2 546.8065795898438 2 546.806031 1091.59751 0.37587 0.00020553 0.27604 0.00015094 0.65192 0.00035647 546.8061210134022 54.66 0.43712 58.161 57.884 58.321 3.5014 33 24 2 0 0 0 0.55148 1 12360 12360 5.2969 0.96765 1 58730 38918 4019 24635 24646 44133 44133 0.05537414506034111 RSPMLDEL 8 Unmodified _RSPMLDEL_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MSMS UPN47_class_I_Rep_3 4 480.7444763183594 2 480.744585 959.474617 NaN NaN NaN NaN NaN NaN NaN 26.514 1 29.862 29.362 30.362 3.3478 0 0 0 0.40604 1 3889 3889 2.5775 0 1 + 38919 17969 24636 24647 44134 44134 -0.006741652168898327 RSPRIVLD 8 Unmodified _RSPRIVLD_ 0 0 0 REV__AluY_dup52454|chr9:85648536-85648834:+|1.9253276834101696|0.2040946882924735|3.24|151.0|13|1|anti-sense REV__AluY_dup52454|chr9:85648536-85648834:+|1.9253276834101696|0.2040946882924735|3.24|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_3 7 478.76300048828125 2 478.287808 954.561064 NaN NaN NaN NaN NaN NaN NaN 31.506 1 35.207 34.707 35.707 3.7015 0 0 0 0.40746 1 4672 4672 0.69038 0 1 + 38920 17238 24637 24648 44135 44135 0.0819658239997807 RSPRLGVF 8 Unmodified _RSPRLGVF_ 0 0 0 REV__ENST00000607044.1_1_3:158519393-158519720:-|nuORF REV__ENST00000607044.1_1_3:158519393-158519720:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 466.2765808105469 2 466.277244 930.539935 0.1962 9.1485E-05 0.067013 3.1247E-05 0.26322 0.00012273 466.27717169497845 107.76 0.17567 111.44 111.38 111.56 3.6783 56 16 5 0 0 0 0.72333 1 25477 25477 7.2892 0 1 104860000 + 38921 23233 24638 24649 44136 44136 0.07188617091139804 RSPRVFPV 8 Unmodified _RSPRVFPV_ 0 0 0 ENST00000534767.1_1_11:43919588-43920434:+|nuORF ENST00000534767.1_1_11:43919588-43920434:+|nuORF ENST00000534767.1_1_11:43919588-43920434:+|nuORF MSMS UPN46_class_I_Rep_3 1 479.2860412597656 2 479.285069 956.555585 NaN NaN NaN NaN NaN NaN NaN 84.614 1 84.614 84.114 85.114 0 0 0 0 0.40738 1 20140 20140 0.79363 0 1 38922 7320 24639 24650 44137 44137 0.07556903608190169 RSPTKASSSDS 11 Unmodified _RSPTKASSSDS_ 0 0 0 L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|19|1|sense L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|19|1|sense L1PA8A_dup1980|chr12:62203123-62206180:-|1.9802332689239397|0.0732831862080437|4.76|151.0|19|1|sense MSMS UPN48_class_I_Rep_1 5 561.7752685546875 2 561.772916 1121.53128 NaN NaN NaN NaN NaN NaN NaN 64.894 1 68.348 67.848 68.848 3.4541 0 0 0 0.38417 1 14724 14724 1.0715 0.27783 1 38923 14968 24640 24651 44138 44138 -0.0246244612665123 RSPYERSRRTR 11 Unmodified _RSPYERSRRTR_ 0 0 0 REV__ENST00000461804.5_1_3:156877890-156877995:-|nuORF REV__ENST00000461804.5_1_3:156877890-156877995:-|nuORF MSMS UPN48_class_I_Rep_2 6 488.6033020019531 3 488.60279 1462.78654 NaN NaN NaN NaN NaN NaN NaN 109.89 1 113.57 113.07 114.07 3.6715 0 0 0 0.38417 1 26165 26165 0.40827 0 1 + 38924 22436 24641 24652 44139 44139 0.07365879852068247 RSQIHRVRR 9 Unmodified _RSQIHRVRR_ 0 0 0 L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 604.3661499023438 2 604.365779 1206.717 NaN NaN NaN NaN NaN NaN NaN 94.148 1 97.884 97.384 98.384 3.736 0 0 0 0.4007 1 23399 23399 0.52476 0 1 38925 10425 24642 24653 44140 44140 0.12191465693967984 RSQIHRVRR 9 Unmodified _RSQIHRVRR_ 0 0 0 L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 604.8687744140625 2 604.365779 1206.717 0.5095 0.00030793 1.3259 0.00080132 1.8354 0.0011092 604.8679292519911 98.392 0.10665 101.82 101.78 101.88 3.4328 17 14 2 0 0 0 0.50088 1 24367 24367 0.52476 0 1 40063 38926 10425 24642 24653 44141 44141 0.12191465693967984 RSQIHRVRR 9 Unmodified _RSQIHRVRR_ 0 0 0 L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 604.36669921875 2 604.365779 1206.717 NaN NaN NaN NaN NaN NaN NaN 97.588 1 101.37 100.87 101.87 3.779 0 0 0 0.39518 1 23188 23188 1.8442 0.19162 1 38927 10425 24642 24653 44142 44142 0.12191465693967984 RSQIHRVRR 9 Unmodified _RSQIHRVRR_ 0 0 0 L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense L1MB3_dup3786|chr3:195904281-195904700:+|1.9645352063590344|0.1420929547151503|3.79|151.0|11|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 604.365779 1206.717 0.5095 0.00030793 1.3259 0.00080132 1.8354 0.0011092 604.8679292519911 98.392 0.10665 101.82 101.78 101.88 3.4328 -0.088302 -6.4346E-05 NaN 0.52476 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 40063 38928 10425 24642 24653 0.12191465693967984 RSQKTPAR 8 Unmodified _RSQKTPAR_ 0 0 0 MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|10|2|sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|10|2|sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 472.28778076171875 2 472.275232 942.535912 NaN NaN NaN NaN NaN NaN NaN 108.04 1 111.71 111.21 112.21 3.6746 0 0 0 0.40746 1 25582 25582 0.69038 0 1 38929 16274 24643 24654 44143 44143 0.06234527597428041 RSQPGVLLY 9 Unmodified _RSQPGVLLY_ 0 0 0 REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|133|3|sense REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|133|3|sense MSMS UPN48_class_I_Rep_2 6 516.5400390625 2 516.795466 1031.57638 NaN NaN NaN NaN NaN NaN NaN 24.427 1 28.067 27.567 28.567 3.6397 0 0 0 0.39518 1 2833 2833 1.8442 0 1 + 38930 23660 24644 24655 44144 44144 0.06185449197209891 RSQYPYAFVP 10 Unmodified _RSQYPYAFVP_ 0 0 0 HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|70|3|anti-sense HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|70|3|anti-sense HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|70|3|anti-sense MSMS UPN48_class_I_Rep_2 6 614.3125 2 614.31148 1226.60841 NaN NaN NaN NaN NaN NaN NaN 49.125 1 52.842 52.342 53.342 3.7175 0 0 0 0.53105 1 9891 9891 3.5965 0 1 38931 7869 24645 24656 44145 44145 0.0041681688030621444 RSRAQVNA 8 Unmodified _RSRAQVNA_ 0 0 0 HERV9-int_dup128|chr7:74902238-74902407:-|2.633611269672452|0.1167510835734359|4.5|151.0|12|3|anti-sense;HERV9-int_dup137|chr7:100324281-100324435:+|1.1384842903249188|0.0422095790618313|4.75|151.0|11|3|anti-sense;HUERS-P3-int_dup219|chr7:76528961-76529283:-|1.0473300568878885|0.1492680657742444|2.81|151.0|21|3|anti-sense HERV9-int_dup128|chr7:74902238-74902407:-|2.633611269672452|0.1167510835734359|4.5|151.0|12|3|anti-sense HERV9-int_dup128|chr7:74902238-74902407:-|2.633611269672452|0.1167510835734359|4.5|151.0|12|3|anti-sense MSMS UPN46_class_I_Rep_3 1 451.2517395019531 2 451.251757 900.488962 NaN NaN NaN NaN NaN NaN NaN 60.757 1 60.757 60.257 61.257 0 0 0 0 0.40625 1 13492 13492 2.3027 0 1 38932 8069 24646 24657 44146 44146 0.0347366804627427 RSRDVEVL 8 Unmodified _RSRDVEVL_ 0 0 0 nc|ENSG00000145362|Q01484-7|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ENSG00000145362|ENST00000357077|ANK2 nc|ENSG00000145362|Q01484-7|ANK2 nc|ENSG00000145362|Q01484-7|ANK2 MSMS UPN46_class_I_Rep_3 1 487.2745361328125 2 487.274898 972.535243 NaN NaN NaN NaN NaN NaN NaN 111.42 1 111.42 110.92 111.92 0 0 0 0 0.40746 1 27471 27471 0.69038 0 1 38933 3393 24647 24658 44147 44147 0.047876881577167296 RSRDVEVL 8 Unmodified _RSRDVEVL_ 0 0 0 nc|ENSG00000145362|Q01484-7|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ENSG00000145362|ENST00000357077|ANK2 nc|ENSG00000145362|Q01484-7|ANK2 nc|ENSG00000145362|Q01484-7|ANK2 MSMS UPN47_class_I_Rep_1 2 487.2746887207031 2 487.274898 972.535243 NaN NaN NaN NaN NaN NaN NaN 61.581 1 64.949 64.449 65.449 3.3681 0 0 0 0.40746 1 14448 14448 0.69038 0 1 38934 3393 24647 24658 44148 44148 0.047876881577167296 RSRGQVLP 8 Unmodified _RSRGQVLP_ 0 0 0 REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|162|2|anti-sense REV__L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|162|2|anti-sense MSMS UPN47_class_I_Rep_2 3 456.7719421386719 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 18.11 1 21.5 21 22 3.3898 0 0 0 0.40472 1 1475 1475 4.3292 0 1 + 38935 24158 24648 24659 44149 44149 0.07079429085752054 RSRGYRAI 8 Unmodified _RSRGYRAI_ 0 0 0 REV__ENSG00000071575|ENST00000155926|TRIB2 REV__ENSG00000071575|ENST00000155926|TRIB2 MSMS UPN46_class_I_Rep_3 1 489.76434326171875 2 489.783225 977.551896 NaN NaN NaN NaN NaN NaN NaN 13.758 1 13.758 13.258 14.258 0 0 0 0 0.40659 1 463 463 1.8442 1.1539 1 + 38936 17815 24649 24660 44150 44150 0.06222233834319013 RSRHRRKRR 9 Unmodified _RSRHRRKRR_ 0 0 0 REV__ENSG00000177679|ENST00000611745|SRRM3 REV__ENSG00000177679|ENST00000611745|SRRM3 MULTI-SECPEP UPN48_class_I_Rep_1 5 436.9412536621094 3 436.608321 1306.80313 0.11667 5.0937E-05 -1.557 -0.00067978 -1.4403 -0.00062884 436.6078781631785 61.212 0.20517 64.679 64.526 64.732 3.4678 19 17 2 0 0 0 0.12509 1 13576 13576 1.1933 0 1 78288 + 38937 20629 24650 24661 44151 44151 0.1620047031933609 RSRIWRTRSKK 11 Unmodified _RSRIWRTRSKK_ 0 0 0 REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.171859952252886|0.0196351871970747|5.9|151.0|10|1|sense REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.171859952252886|0.0196351871970747|5.9|151.0|10|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 491.6338195800781 3 491.967292 1472.88005 0.26957 0.00013262 0.94709 0.00046594 1.2167 0.00059856 491.96779359532417 107.15 0.019058 110.69 110.68 110.7 3.5382 4 2 2 0 0 0 22.551 1 26162 26162 0.32927 0.16995 1 53253 + 38938 30465 24651 24662 44152 44152 0.1625222402512918 RSRKALWG 8 Unmodified _RSRKALWG_ 0 0 0 L1ME1_dup26529|chr16:22392132-22392520:-|1.16946577926104|0.2016755510948003|2.54|151.0|7|2|sense L1ME1_dup26529|chr16:22392132-22392520:-|1.16946577926104|0.2016755510948003|2.54|151.0|7|2|sense L1ME1_dup26529|chr16:22392132-22392520:-|1.16946577926104|0.2016755510948003|2.54|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.78936767578125 2 487.288143 972.561733 -0.31876 -0.00015533 -1.148 -0.00055939 -1.4667 -0.00071471 487.28765122908726 26.348 0.32826 30.11 29.945 30.273 3.7624 41 30 2 0 0 0 0.82752 1 3785 3785 0.79363 0 1 41899 38939 12342 24652 24663 44153 44153 0.0743542183969339 RSRPQCRVKVK 11 Unmodified _RSRPQCRVKVK_ 0 0 0 ENST00000518711.1_1_8:48641465-48642165:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;ENSG00000164808|ENST00000297423|SPIDR ENST00000518711.1_1_8:48641465-48642165:+|nuORF ENST00000518711.1_1_8:48641465-48642165:+|nuORF MSMS UPN46_class_I_Rep_3 1 452.9377136230469 3 452.938345 1355.79321 NaN NaN NaN NaN NaN NaN NaN 36.695 1 36.695 36.195 37.195 0 0 0 0 0.38417 1 6830 6830 1.0136 0.60531 1 38940 4131 24653 24664 44154 44154 0.12954101479067504 RSRPTDLL 8 Unmodified _RSRPTDLL_ 0 0 0 REV__ENST00000562586.1_1_16:8953026-8961919:-|nuORF REV__ENST00000562586.1_1_16:8953026-8961919:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 479.2769470214844 2 479.277441 956.540328 0.13854 6.6398E-05 -0.25052 -0.00012007 -0.11198 -5.3671E-05 479.2771390928401 76.664 0.60101 80.079 79.988 80.589 3.4149 73 56 2 0 0 0 0.82752 1 19025 19025 2.3027 0 1 543510 + 38941 19700 24654 24665 44155 44155 0.06031992020336929 RSRPTDLL 8 Unmodified _RSRPTDLL_ 0 0 0 REV__ENST00000562586.1_1_16:8953026-8961919:-|nuORF REV__ENST00000562586.1_1_16:8953026-8961919:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 479.277441 956.540328 0.24868 0.00011919 0.70681 0.00033876 0.95549 0.00045794 479.27768511151737 80.468 0.059219 80.468 80.436 80.495 0 0.19463 0.00090104 NaN 2.3027 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 57639 + 38942 19700 24654 24665 0.06031992020336929 RSRRFELL 8 Unmodified _RSRRFELL_ 0 0 0 REV__AluJr_dup21785|chr5:32167669-32167965:+|1.3582266087911217|0.0340867948083941|5.32|151.0|2|1|sense REV__AluJr_dup21785|chr5:32167669-32167965:+|1.3582266087911217|0.0340867948083941|5.32|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 538.8069458007812 2 538.819807 1075.62506 NaN NaN NaN NaN NaN NaN NaN 79.089 1 82.535 82.035 83.035 3.4456 0 0 0 0.40746 1 19690 19690 0.69038 0 1 + 38943 17032 24655 24666 44156 44156 0.09027362556957996 RSRRQRRRRRC 11 Unmodified _RSRRQRRRRRC_ 0 0 0 REV__ENSG00000189431|ENST00000529419|RASSF10 REV__ENSG00000189431|ENST00000529419|RASSF10 MSMS UPN48_class_I_Rep_2 6 529.3141479492188 3 529.313691 1584.91924 NaN NaN NaN NaN NaN NaN NaN 18.773 1 22.424 21.924 22.924 3.6509 0 0 0 0.38417 1 1315 1315 0 0 1 + 38944 21011 24656 24667 44157 44157 0.15018045827741844 RSRSACWA 8 Unmodified _RSRSACWA_ 0 0 0 REV__L1PA3_dup9636|chr15:61896238-61902274:+|2.335879981002092|0.0989047608543693|4.56|150.0|3|1|sense REV__L1PA3_dup9636|chr15:61896238-61902274:+|2.335879981002092|0.0989047608543693|4.56|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 468.7263488769531 2 468.727061 935.439569 NaN NaN NaN NaN NaN NaN NaN 101.08 1 101.08 100.58 101.58 0 0 0 0 0.40738 1 24657 24657 0.79363 0 1 + 38945 29578 24657 24668 44158 44158 -0.03073363234182125 RSRTPSLP 8 Unmodified _RSRTPSLP_ 0 0 0 nc|ENSG00000186868|P10636-3|MAPT;ENST00000576518.1_1_17:44055640-44101534:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT;ENST00000570299.5_1_17:44039703-44096001:+|nuORF nc|ENSG00000186868|P10636-3|MAPT nc|ENSG00000186868|P10636-3|MAPT MULTI-MSMS UPN47_class_I_Rep_2 3 457.26409912109375 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.82752 1 18180 18180 2.3027 0 1 317760 38946 5170 24658 24669 44159 44159 0.05435722848869773 RSRVKLRSM 9 Unmodified _RSRVKLRSM_ 0 0 0 REV__L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|31|2|sense REV__L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 566.8421630859375 2 566.840217 1131.66588 NaN NaN NaN NaN NaN NaN NaN 92.503 1 92.503 92.003 93.003 0 0 0 0 0.39518 1 22388 22388 1.8442 0 1 + 38947 29327 24659 24670 44160 44160 0.10531380604925289 RSSEKLVR 8 Unmodified _RSSEKLVR_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MULTI-MSMS UPN48_class_I_Rep_1 5 487.79071044921875 2 487.790715 973.566878 0.17961 8.7611E-05 0.27011 0.00013176 0.44972 0.00021937 487.7907237122022 75.285 0.75566 78.785 78.691 79.447 3.4996 104 73 2 0 0 0 0.82752 2 17831 17831;17901 1.8442 0 1 191740 38948 2528 24660 24671 44161;44162 44161 0.07903680911670108 RSSEKLVR 8 Unmodified _RSSEKLVR_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MULTI-SECPEP UPN48_class_I_Rep_2 6 487.79034423828125 2 487.790715 973.566878 0.24967 0.00012179 0.23964 0.00011689 0.48931 0.00023868 487.7906872695691 75.531 0.095039 79.132 79.103 79.198 3.6011 24 11 3 0 0 0 0.72333 1 17813 17813 1.8442 0 1 138010 38949 2528 24660 24671 44163 44163 0.07903680911670108 RSSEKLVR 8 Unmodified _RSSEKLVR_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-6|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MULTI-SECPEP UPN48_class_I_Rep_3 7 487.79095458984375 2 487.790715 973.566878 0.28208 0.00013759 0.27274 0.00013304 0.55481 0.00027063 487.7906224432488 75.668 0.18484 79.234 79.2 79.385 3.5658 36 19 2 0 0 0 0.72333 1 17795 17795 1.8442 0 1 102780 38950 2528 24660 24671 44164 44164 0.07903680911670108 RSSGYPLTI 9 Unmodified _RSSGYPLTI_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 497.2716979980469 2 497.271824 992.529095 0.17768 8.8357E-05 -0.077957 -3.8766E-05 0.099727 4.9591E-05 497.2715855310901 46.153 0.53333 49.672 49.435 49.968 3.5192 46 35 2 0 0 0 0.26468 1 9031 9031 16.149 3.9084 1 134890 38951 1731 24661 24672 44165 44165 0.03253169926199462 RSSGYPLTI 9 Unmodified _RSSGYPLTI_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 497.2712707519531 2 497.271824 992.529095 0.19355 9.6248E-05 0.047289 2.3515E-05 0.24084 0.00011976 497.2717639021893 45.875 0.64008 49.633 49.28 49.92 3.7579 56 47 2 0 0 0 0.32682 1 8933 8933 12.241 0 1 112250 38952 1731 24661 24672 44166 44166 0.03253169926199462 RSSGYPLTI 9 Unmodified _RSSGYPLTI_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 497.2723693847656 2 497.271824 992.529095 0.1748 8.6922E-05 0.19591 9.7419E-05 0.37071 0.00018434 497.2718356880042 46.089 0.51006 49.726 49.468 49.978 3.6369 47 34 2 0 0 0 0.32682 2 8913 8913;8975 12.241 0 1 101450 38953 1731 24661 24672 44167;44168 44167 0.03253169926199462 RSSGYPLTI 9 Unmodified _RSSGYPLTI_ 0 0 0 ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 ENST00000594207.1_1_19:41774132-41786840:+|nuORF ENST00000594207.1_1_19:41774132-41786840:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 497.271824 992.529095 0.19355 9.6248E-05 0.047289 2.3515E-05 0.24084 0.00011976 497.2717639021893 45.875 0.64008 49.633 49.28 49.92 3.7579 -0.044234 -2.8039E-05 NaN 16.149 56 47 2 NaN NaN NaN NaN 0 NaN NaN 0 112250 38954 1731 24661 24672 0.03253169926199462 RSSIAGLHVRV 11 Unmodified _RSSIAGLHVRV_ 0 0 0 L1MC1_dup1225|chr2:32361353-32362313:-|5.125512289723243|0.0172147215160367|8.22|151.0|62|3|anti-sense L1MC1_dup1225|chr2:32361353-32362313:-|5.125512289723243|0.0172147215160367|8.22|151.0|62|3|anti-sense L1MC1_dup1225|chr2:32361353-32362313:-|5.125512289723243|0.0172147215160367|8.22|151.0|62|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 597.8568115234375 2 597.856921 1193.69929 0.57613 0.00034445 -0.80207 -0.00047952 -0.22593 -0.00013508 597.8562249818585 88.579 0.29892 88.579 88.402 88.701 0 55 32 3 0 0 0 22.551 1 21283 21283 2.4985 0.65425 1 414190 38955 11110 24662 24673 44169 44169 0.11018705648461946 RSSKITTLSP 10 Unmodified _RSSKITTLSP_ 0 0 0 ENSG00000027075.15,PRKCH,chr14,+,I36.1,61544675,61547742|26|8.8|1|intron ENSG00000027075.15,PRKCH,chr14,+,I36.1,61544675,61547742|26|8.8|1|intron ENSG00000027075.15,PRKCH,chr14,+,I36.1,61544675,61547742|26|8.8|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 545.31689453125 2 545.316763 1088.61897 0.38104 0.00020779 0.2692 0.0001468 0.65024 0.00035459 545.3167849193663 85.188 0.25197 85.188 85.037 85.289 0 45 27 3 0 0 0 0.56078 1 20296 20296 3.2813 3.2813 1 974590 38956 825 24663 24674 44170 44170 0.07820799534761136 RSSKITTLSP 10 Unmodified _RSSKITTLSP_ 0 0 0 ENSG00000027075.15,PRKCH,chr14,+,I36.1,61544675,61547742|26|8.8|1|intron ENSG00000027075.15,PRKCH,chr14,+,I36.1,61544675,61547742|26|8.8|1|intron ENSG00000027075.15,PRKCH,chr14,+,I36.1,61544675,61547742|26|8.8|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 545.3170166015625 2 545.316763 1088.61897 0.47423 0.0002586 0.10344 5.6407E-05 0.57767 0.00031501 545.3166379261304 81.993 2.4989 85.505 84.364 86.863 3.5122 464 274 3 0 0 0 0.54822 2 20391 20391;20696 5.7319 5.7319 1 499320 38957 825 24663 24674 44171;44172 44171 0.07820799534761136 RSSKQLVDI 9 Unmodified _RSSKQLVDI_ 0 0 0 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 ENSG00000116260|ENST00000367602|QSOX1 MULTI-MSMS UPN47_class_I_Rep_1 2 523.3034057617188 2 523.303655 1044.59276 0.34388 0.00017995 -0.67753 -0.00035455 -0.33365 -0.0001746 523.303104469083 80.457 0.52776 83.929 83.852 84.38 3.4721 85 59 2 0 0 0 0.44742 1 20029 20029 5.2969 0.39987 1 368010 38958 2175 24664 24675 44173 44173 0.07224530363282611 RSSLKPLTI 9 Unmodified _RSSLKPLTI_ 0 0 0 REV__L1PREC2_dup5878|chr12:45159491-45162067:-|1.2307912645149452|0.0366975938926386|5.07|151.0|157|3|anti-sense REV__L1PREC2_dup5878|chr12:45159491-45162067:-|1.2307912645149452|0.0366975938926386|5.07|151.0|157|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 507.8185119628906 2 507.818941 1013.62333 0.1307 6.6374E-05 -0.26384 -0.00013398 -0.13314 -6.761E-05 507.8187897129588 63.277 0.86002 66.533 66.217 67.077 3.2558 123 66 2 0 0 0 0.35081 1 15128 15128 10.824 0 1 263130 + 38959 30736 24665 24676 44174 44174 0.1170630874833023 RSSLNFGW 8 Unmodified _RSSLNFGW_ 0 0 0 HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|199|3|anti-sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|199|3|anti-sense HERVL-int_dup637|chr4:102741898-102745356:-|5.896291255243083|0.0566640979431353|6.7|151.0|199|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.7430725097656 2 483.743234 965.471915 -0.34739 -0.00016805 0.56285 0.00027228 0.21546 0.00010423 483.74353994114836 20.792 0.24758 24.436 24.236 24.484 3.6436 38 27 2 0 0 0 0.82752 1 2119 2119 0.79363 0 1 62094 38960 8374 24666 24677 44175 44175 -0.01220252559517121 RSSPFFAYF 9 Unmodified _RSSPFFAYF_ 0 0 0 L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|121|2|anti-sense L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|121|2|anti-sense L1MA4_dup9313|chr18:35599663-35601821:-|1.1874453775126346|0.0099809896467331|6.89|149.0|121|2|anti-sense MSMS UPN47_class_I_Rep_3 4 561.2594604492188 2 561.274367 1120.53418 NaN NaN NaN NaN NaN NaN NaN 70.899 1 74.11 73.61 74.61 3.2113 0 0 0 0.37476 1 17370 17370 6.7232 0.36906 1 38961 9744 24667 24678 44176 44176 -0.02126526211213786 RSSRPVWAAW 10 Unmodified _RSSRPVWAAW_ 0 0 0 AluSx3_dup31506|chr21:34867115-34867445:+|1.6511097727949118|0.033367307278161|5.63|150.0|1|1|sense AluSx3_dup31506|chr21:34867115-34867445:+|1.6511097727949118|0.033367307278161|5.63|150.0|1|1|sense AluSx3_dup31506|chr21:34867115-34867445:+|1.6511097727949118|0.033367307278161|5.63|150.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 405.884033203125 3 405.884235 1214.63087 NaN NaN NaN NaN NaN NaN NaN 65.685 1 69.165 68.665 69.665 3.4802 0 0 0 0.53105 1 14949 14949 1.7423 0.81674 1 38962 335 24668 24679 44177 44177 0.03214461068591845 RSSSLGYISK 10 Unmodified _RSSSLGYISK_ 0 0 0 nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND nc|ENSG00000135902|Q07001-2|CHRND nc|ENSG00000135902|Q07001-2|CHRND MULTI-MSMS UPN48_class_I_Rep_2 6 549.2999267578125 2 549.301113 1096.58767 0.48921 0.00026872 -0.061443 -3.3751E-05 0.42776 0.00023497 549.3010333329299 98.713 0.073196 102.48 102.47 102.54 3.7707 12 9 2 0 0 0 0.54822 1 23452 23452 5.7319 0.97584 1 204270 38963 2937 24669 24680 44178 44178 0.04324226500671102 RSSSNLVGLI 10 Unmodified _RSSSNLVGLI_ 0 0 0 REV__nc|ENSG00000188092|B7ZAQ6-3|GPR89A REV__nc|ENSG00000188092|B7ZAQ6-3|GPR89A MULTI-MSMS UPN48_class_I_Rep_2 6 523.677978515625 2 523.303655 1044.59276 0.3781 0.00019786 -0.18651 -9.7604E-05 0.19158 0.00010026 523.3033786877409 77.221 1.2339 80.832 80.389 81.623 3.6116 174 121 2 0 0 0 0.56333 1 18197 18197 1.4819 0 1 126020 + 38964 18629 24670 24681 44179 44179 0.07224530363305348 RSSVHISTDVL 11 Unmodified _RSSVHISTDVL_ 0 0 0 L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|100|3|anti-sense L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|100|3|anti-sense L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|100|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 405.2218322753906 3 405.222693 1212.64625 -0.7336 -0.00029727 -0.8885 -0.00036004 -1.6221 -0.00065731 405.2224625480214 47.506 0.83852 50.855 50.209 51.048 3.3492 175 64 4 0 0 0 0.50573 1 10130 10130 3.8459 0.25885 1 461230 38965 12691 24671 24682 44180 44180 0.04843283075138061 RSTFEENPEE 10 Unmodified _RSTFEENPEE_ 0 0 0 REV__ENSG00000134852|ENST00000513440|CLOCK REV__ENSG00000134852|ENST00000513440|CLOCK MSMS UPN46_class_I_Rep_3 1 619.2708129882812 2 619.270207 1236.52586 NaN NaN NaN NaN NaN NaN NaN 27.748 1 27.748 27.248 28.248 0 0 0 0 0.53105 1 4162 4162 2.9952 0 1 + 38966 19115 24672 24683 44181 44181 -0.0829416970912007 RSTKDLRV 8 Unmodified _RSTKDLRV_ 0 0 0 REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|9|1|sense REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 487.7727355957031 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 17.066 1 17.066 16.566 17.566 0 0 0 0 0.40746 1 1284 1284 0.69038 0 1 + 38967 30952 24673 24684 44182 44182 0.0790368091164737 RSTRAVLY 8 Unmodified _RSTRAVLY_ 0 0 0 REV__nc|ENSG00000244694|Q6ZW05-4|PTCHD4 REV__nc|ENSG00000244694|Q6ZW05-4|PTCHD4 MSMS UPN48_class_I_Rep_1 5 483.28009033203125 2 483.279983 964.545414 NaN NaN NaN NaN NaN NaN NaN 83.355 1 86.942 86.442 87.442 3.5871 0 0 0 0.40738 1 19932 19932 0.79363 0 1 + 38968 21343 24674 24685 44183 44183 0.061722958829250274 RSTRPLEV 8 Unmodified _RSTRPLEV_ 0 0 0 L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|353|3|anti-sense L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|353|3|anti-sense L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|353|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.2773742675781 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 72.9 1 76.464 75.964 76.964 3.5645 0 0 0 0.40625 1 17091 17091 2.3027 0 1 38969 14365 24675 24686 44184 44184 0.06031992020314192 RSTRPLEV 8 Unmodified _RSTRPLEV_ 0 0 0 L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|353|3|anti-sense L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|353|3|anti-sense L1PA4_dup554|chr1:173725765-173731872:+|4.204793095287128|0.2817104576458666|3.9|151.0|353|3|anti-sense MSMS UPN48_class_I_Rep_3 7 479.2776794433594 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 74.046 1 77.597 77.097 78.097 3.5505 0 0 0 0.40625 1 17344 17344 2.3027 0 1 38970 14365 24675 24686 44185 44185 0.06031992020314192 RSTRWSWWL 9 Unmodified _RSTRWSWWL_ 0 0 0 REV__L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|93|1|anti-sense REV__L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|93|1|anti-sense MSMS UPN47_class_I_Rep_2 3 639.3318481445312 2 639.330539 1276.64652 NaN NaN NaN NaN NaN NaN NaN 101.07 1 104.58 104.08 105.08 3.5063 0 0 0 0.39518 1 24682 24682 1.8442 0.19162 1 + 38971 24131 24676 24687 44186 44186 0.019267475856622696 RSVDETLRL 9 Unmodified _RSVDETLRL_ 0 0 0 ENSG00000117450|ENST00000319248|PRDX1;ENSG00000123131|ENST00000379341|PRDX4 ENSG00000117450|ENST00000319248|PRDX1 ENSG00000117450|ENST00000319248|PRDX1 MULTI-MSMS UPN48_class_I_Rep_1 5 544.805908203125 2 544.806562 1087.59857 0.45649 0.0002487 -0.23948 -0.00013047 0.21701 0.00011823 544.806401703436 38.052 0.37704 41.557 41.421 41.798 3.5052 57 34 2 0 0 0 0.39745 1 6521 6521 8.1555 0 1 142480 38972 2218 24677 24688 44187 44187 0.05827628874953916 RSVDETLRL 9 Unmodified _RSVDETLRL_ 0 0 0 ENSG00000117450|ENST00000319248|PRDX1;ENSG00000123131|ENST00000379341|PRDX4 ENSG00000117450|ENST00000319248|PRDX1 ENSG00000117450|ENST00000319248|PRDX1 MULTI-MSMS UPN48_class_I_Rep_2 6 544.8064575195312 2 544.806562 1087.59857 0.44808 0.00024412 -0.2415 -0.00013157 0.20658 0.00011254 544.8066185093635 37.702 0.38599 41.419 41.279 41.665 3.7164 56 39 2 0 0 0 0.35123 1 6468 6468 10.8 2.644 1 106070 38973 2218 24677 24688 44188 44188 0.05827628874953916 RSVDETLRL 9 Unmodified _RSVDETLRL_ 0 0 0 ENSG00000117450|ENST00000319248|PRDX1;ENSG00000123131|ENST00000379341|PRDX4 ENSG00000117450|ENST00000319248|PRDX1 ENSG00000117450|ENST00000319248|PRDX1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 544.806562 1087.59857 0.39608 0.00021579 0.074168 4.0407E-05 0.47025 0.00025619 544.8067083206626 37.849 0.32092 41.508 41.332 41.653 3.6595 0.013556 0.00023116 NaN 10.8 55 33 2 NaN NaN NaN NaN 0 NaN NaN 0 128370 38974 2218 24677 24688 0.05827628874953916 RSVDVKLFQ 9 Unmodified _RSVDVKLFQ_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS UPN47_class_I_Rep_2 3 546.3141479492188 2 546.314023 1090.61349 0.018646 1.0186E-05 -0.0074861 -4.0897E-06 0.01116 6.0966E-06 546.3139627634628 39.537 1.2258 42.915 42.565 43.791 3.3785 163 77 3 0 0 0 0.47197 1 7928 7928 3.5965 0.60125 1 363280 + 38975 21135 24678 24689 44189 44189 0.07181120742939129 RSVKMGQV 8 Unmodified _RSVKMGQV_ 0 0 0 REV__ENST00000348035.8_1_7:6442704-6442875:+|nuORF REV__ENST00000348035.8_1_7:6442704-6442875:+|nuORF MSMS UPN47_class_I_Rep_3 4 452.7559509277344 2 452.755287 903.496021 NaN NaN NaN NaN NaN NaN NaN 19.807 1 23.159 22.659 23.659 3.3514 0 0 0 0.40625 1 1922 1922 2.3027 0 1 + 38976 21848 24679 24690 44190 44190 0.040412646025060894 RSVKVTETLA 10 Unmodified _RSVKVTETLA_ 0 0 0 REV__ENST00000409106.5_2_2:114513800-114513986:-|nuORF REV__ENST00000409106.5_2_2:114513800-114513986:-|nuORF MSMS UPN47_class_I_Rep_1 2 552.325927734375 2 552.324588 1102.63462 NaN NaN NaN NaN NaN NaN NaN 90.415 1 94.105 93.605 94.605 3.6899 0 0 0 0.53105 1 22590 22590 1.6526 0 1 + 38977 22175 24680 24691 44191 44191 0.08741086051827551 RSVNSVLLF 9 Unmodified _RSVNSVLLF_ 0 0 0 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN48_class_I_Rep_1 5 517.803466796875 2 517.803291 1033.59203 0.42401 0.00021955 0.035821 1.8548E-05 0.45983 0.0002381 517.8032288147494 60.314 1.2826 63.788 63.334 64.617 3.4737 242 99 4 0 0 0 0.057664 2 13355 13355;13399 45.7 9.5726 1 2825200 38978 1706 24681 24692 44192;44193 44192 0.07657735714224145 RSVNSVLLF 9 Unmodified _RSVNSVLLF_ 0 0 0 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN48_class_I_Rep_2 6 517.803466796875 2 517.803291 1033.59203 0.42563 0.00022039 0.090935 4.7086E-05 0.51657 0.00026748 517.8032675138154 60.287 1.2225 63.765 63.317 64.54 3.4785 295 108 4 0 0 0 0.048662 2 13298 13298;13335 49.554 13.427 1 2555900 38979 1706 24681 24692 44194;44195 44194 0.07657735714224145 RSVNSVLLF 9 Unmodified _RSVNSVLLF_ 0 0 0 nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF nc|ENSG00000104824|P14866-2|HNRNPL nc|ENSG00000104824|P14866-2|HNRNPL MULTI-MSMS UPN48_class_I_Rep_3 7 517.8034057617188 2 517.803291 1033.59203 0.3494 0.00018092 0.14641 7.581E-05 0.49581 0.00025673 517.803281526211 60.152 1.1808 63.669 63.151 64.331 3.5169 284 107 4 0 0 0 0.022868 2 13210 13171;13210 61.602 17.744 1 2755500 38980 1706 24681 24692 44196;44197 44197 0.07657735714224145 RSVPQVTTV 9 Unmodified _RSVPQVTTV_ 0 0 0 REV__MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|105|3|anti-sense REV__MSTA-int_dup2362|chr12:71851388-71853003:-|3.190079681610907|0.0424980766870957|6.23|151.0|105|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.7851867675781 2 493.785099 985.555644 0.27573 0.00013615 0.028973 1.4307E-05 0.30471 0.00015046 493.784960047103 50.215 0.56124 53.558 53.351 53.912 3.3431 51 27 3 0 0 0 0.44742 1 10986 10986 5.2969 0 1 115020 + 38981 31870 24682 24693 44198 44198 0.06228858817519267 RSVPRQDRP 9 Unmodified _RSVPRQDRP_ 0 0 0 REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|79|2|sense REV__HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|79|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 555.8092651367188 2 555.809971 1109.60539 -0.18474 -0.00010268 0.56947 0.00031652 0.38473 0.00021383 555.8102868077204 13.51 0.2219 13.51 13.369 13.591 0 41 26 2 0 0 0 0.49187 1 400 400 1.4819 0 1 29067 + 38982 23615 24683 24694 44199 44199 0.054969865461771406 RSVRPRHTIQ 10 Unmodified _RSVRPRHTIQ_ 0 0 0 REV__nc|ENSG00000162894|O60667-2|FCMR REV__nc|ENSG00000162894|O60667-2|FCMR MULTI-MSMS UPN48_class_I_Rep_3 7 625.3681640625 2 625.365444 1248.71634 0.60645 0.00037925 3.128 0.0019561 3.7344 0.0023354 625.8688651668381 91.958 0.22547 95.821 95.699 95.925 3.8634 39 31 2 0 0 0 0.56118 1 21794 21794 2.9952 0 1 1080900 + 38983 19950 24684 24695 44200 44200 0.10192626254297465 RSVSLLPLEF 10 Unmodified _RSVSLLPLEF_ 0 0 0 ENST00000564583.1_1_16:27455877-27457360:+|nuORF;ENSG00000103522|ENST00000337929|IL21R ENST00000564583.1_1_16:27455877-27457360:+|nuORF ENST00000564583.1_1_16:27455877-27457360:+|nuORF MSMS UPN48_class_I_Rep_2 6 580.8416748046875 2 580.837331 1159.66011 NaN NaN NaN NaN NaN NaN NaN 71.538 1 75.088 74.588 75.588 3.5505 0 0 0 0.53105 1 16698 16698 3.2813 0.78282 1 38984 1663 24685 24696 44201 44201 0.08666560574238247 RSWRYFTR 8 Unmodified _RSWRYFTR_ 0 0 0 ENST00000505956.5_2_3:129137104-129140253:-|nuORF;ENST00000514900.5_1_3:129137104-129137362:-|nuORF ENST00000505956.5_2_3:129137104-129140253:-|nuORF ENST00000505956.5_2_3:129137104-129140253:-|nuORF MSMS UPN46_class_I_Rep_3 1 586.3096313476562 2 586.309606 1170.60466 NaN NaN NaN NaN NaN NaN NaN 88.827 1 88.827 88.327 89.327 0 0 0 0 0.40625 1 21348 21348 2.3027 0.24298 1 38985 7155 24686 24697 44202 44202 0.026181918971360574 RSWSAKGSME 10 Unmodified _RSWSAKGSME_ 0 0 0 REV__ENSG00000179930|ENST00000339948|ZNF648 REV__ENSG00000179930|ENST00000339948|ZNF648 MSMS UPN47_class_I_Rep_1 2 569.7684936523438 2 569.769123 1137.52369 NaN NaN NaN NaN NaN NaN NaN 36.477 1 40.146 39.646 40.646 3.6692 0 0 0 0.53105 1 6812 6812 2.9952 0.41776 1 + 38986 20692 24687 24698 44203 44203 -0.03956876927918529 RSYDYQFRY 9 Unmodified _RSYDYQFRY_ 0 0 0 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant MULTI-MSMS UPN48_class_I_Rep_1 5 649.302001953125 2 649.301644 1296.58874 0.45922 0.00029817 -0.11151 -7.2404E-05 0.34771 0.00022577 649.3015038720674 41.498 0.94047 45.004 44.692 45.632 3.506 169 88 2 0 0 0 0.009167 7 7610 7494;7536;7572;7610;7647;7683;7720 110.79 84.525 1 716980 38987 3264 24688 24699 44204;44205;44206;44207;44208;44209;44210 44207 -0.04769559130431844 RSYDYQFRY 9 Unmodified _RSYDYQFRY_ 0 0 0 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant MULTI-MSMS UPN48_class_I_Rep_1 5 649.302001953125 2 649.301644 1296.58874 0.45639 0.00029633 -0.015955 -1.036E-05 0.44043 0.00028597 649.3015159114232 42.216 0.26977 45.724 45.615 45.885 3.5079 41 26 2 0 0 0 0.3495 2 7793 7755;7793 15.248 8.1468 1 105780 38988 3264 24688 24699 44211;44212 44212 -0.04769559130431844 RSYDYQFRY 9 Unmodified _RSYDYQFRY_ 0 0 0 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant MULTI-MSMS UPN48_class_I_Rep_2 6 649.3018188476562 2 649.301644 1296.58874 0.44277 0.00028749 0.022632 1.4695E-05 0.4654 0.00030219 649.3015957679778 41.12 1.3402 44.871 44.527 45.867 3.7508 272 140 2 0 0 0 0.0057972 12 7465 7389;7428;7465;7503;7536;7569;7602;7611;7641;7678;7721;7742 139.78 108.51 1 1150900 38989 3264 24688 24699 44213;44214;44215;44216;44217;44218;44219;44220;44221;44222;44223;44224 44215 -0.04769559130431844 RSYDYQFRY 9 Unmodified _RSYDYQFRY_ 0 0 0 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant MULTI-MSMS UPN48_class_I_Rep_3 7 649.3017578125 2 649.301644 1296.58874 0.56933 0.00036967 -0.20036 -0.0001301 0.36897 0.00023957 649.3014404381497 41.347 1.3735 44.993 44.579 45.952 3.6458 254 140 2 0 0 0 0.0057972 9 7457 7387;7423;7457;7495;7531;7567;7573;7608;7650 139.78 113.51 1 695250 38990 3264 24688 24699 44225;44226;44227;44228;44229;44230;44231;44232;44233 44227 -0.04769559130431844 RSYDYQFRY 9 Unmodified _RSYDYQFRY_ 0 0 0 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1 WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant WDTC1|p.G532D|1|0.06|ENSG00000142784|chr1:27303747-27303747|G/A|missense_variant MSMS UPN48_class_I_Rep_3 7 649.302001953125 2 649.301644 1296.58874 NaN NaN NaN NaN NaN NaN NaN 42.313 1 45.954 45.454 46.454 3.6415 0 0 0 0.37515 1 7740 7740 6.2058 1.3088 1 38991 3264 24688 24699 44234 44234 -0.04769559130431844 RSYETVLSF 9 Unmodified _RSYETVLSF_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS UPN48_class_I_Rep_1 5 551.2825927734375 2 551.282389 1100.55022 0.57936 0.00031939 0.36247 0.00019982 0.94183 0.00051921 551.2822468247589 56.846 1.0408 60.34 59.918 60.959 3.4942 280 89 5 0 0 0 0.0070571 4 12254 12182;12218;12254;12291 86.332 9.5756 1 1868800 38992 4372 24689 24700 44235;44236;44237;44238 44237 0.003971352350390589 RSYETVLSF 9 Unmodified _RSYETVLSF_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS UPN48_class_I_Rep_2 6 551.2825927734375 2 551.282389 1100.55022 0.60154 0.00033162 0.35014 0.00019303 0.95168 0.00052464 551.2822449225698 56.831 1.0005 60.364 59.878 60.879 3.5333 293 90 5 0 0 0 0.013215 4 12258 12150;12186;12222;12258 67.838 9.1593 1 1837000 38993 4372 24689 24700 44239;44240;44241;44242 44242 0.003971352350390589 RSYHLMHMG 9 Unmodified _RSYHLMHMG_ 0 0 0 REV__Tigger9b_dup245|chr5:87361667-87362267:-|1.7288859381062225|0.3216798242537838|2.43|151.0|15|2|sense REV__Tigger9b_dup245|chr5:87361667-87362267:-|1.7288859381062225|0.3216798242537838|2.43|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 566.2614135742188 2 566.262953 1130.51135 NaN NaN NaN NaN NaN NaN NaN 38.331 1 42.047 41.547 42.547 3.7164 0 0 0 0.39326 1 6667 6667 2.3027 0.4585 1 + 38994 32814 24690 24701 44243 44243 -0.048681918719694295 RSYPKRWRRR 10 Unmodified _RSYPKRWRRR_ 0 0 0 REV__ENST00000258821.7_1_14:20769994-20774086:-|nuORF REV__ENST00000258821.7_1_14:20769994-20774086:-|nuORF MSMS UPN46_class_I_Rep_3 1 487.61993408203125 3 487.620115 1459.83852 NaN NaN NaN NaN NaN NaN NaN 90.852 1 90.852 90.352 91.352 0 0 0 0 0.53105 1 21918 21918 0.15932 0.064481 1 + 38995 21545 24691 24702 44244 44244 0.12699088056479013 RSYRFMVM 8 Unmodified _RSYRFMVM_ 0 0 0 nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2 nc|ENSG00000028116|Q86Y07-5|VRK2 nc|ENSG00000028116|Q86Y07-5|VRK2 MSMS UPN47_class_I_Rep_3 4 545.2705688476562 2 545.270247 1088.52594 NaN NaN NaN NaN NaN NaN NaN 32.65 1 35.937 35.437 36.437 3.2867 0 0 0 0.40738 1 5725 5725 0.79363 0 1 38996 828 24692 24703 44245 44245 -0.01478119723810778 RSYSQQLFL 9 Unmodified _RSYSQQLFL_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B;ENST00000466185.1_1_6:4052221-4056689:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MULTI-MSMS UPN48_class_I_Rep_1 5 571.3038330078125 2 571.303655 1140.59276 0.42452 0.00024253 -0.032151 -1.8368E-05 0.39237 0.00022416 571.3035669958933 52.989 0.96819 56.509 56.143 57.112 3.5192 190 70 3 0 0 0 0.073198 3 11069 11021;11069;11107 40.239 27.223 1 1290800 38997 2024 24693 24704 44246;44247;44248 44247 0.028085303632678915 RSYSQQLFL 9 Unmodified _RSYSQQLFL_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B;ENST00000466185.1_1_6:4052221-4056689:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MULTI-MSMS UPN48_class_I_Rep_2 6 571.3037109375 2 571.303655 1140.59276 0.53579 0.0003061 -0.21807 -0.00012458 0.31772 0.00018152 571.3034637217532 52.818 1.0686 56.427 56.063 57.132 3.6098 174 69 3 0 0 0 0.10956 5 11059 10970;11012;11059;11100;11145 32.037 24.991 1 1242100 38998 2024 24693 24704 44249;44250;44251;44252;44253 44251 0.028085303632678915 RSYSQQLFL 9 Unmodified _RSYSQQLFL_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B;ENST00000466185.1_1_6:4052221-4056689:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MULTI-MSMS UPN48_class_I_Rep_3 7 571.3038330078125 2 571.303655 1140.59276 0.32645 0.0001865 0.060376 3.4493E-05 0.38683 0.000221 571.3036233536135 53.031 0.95346 56.614 56.087 57.041 3.5836 166 64 3 0 0 0 0.071184 5 10963 10917;10963;11001;11044;11085 40.725 24.991 1 1530000 38999 2024 24693 24704 44254;44255;44256;44257;44258 44255 0.028085303632678915 RSYSQQLFL 9 Unmodified _RSYSQQLFL_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B;ENST00000466185.1_1_6:4052221-4056689:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MULTI-MATCH UPN46_class_I_Rep_3 1 2 571.303655 1140.59276 0.39143 0.00022362 -6.1513 -0.0035142 -5.7598 -0.0032906 571.8031492947921 56.891 0.047123 56.891 56.864 56.911 0 0.28083 -0.0069756 NaN 40.725 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 109400 39000 2024 24693 24704 0.028085303632678915 RTAHFKMV 8 Unmodified _RTAHFKMV_ 0 0 0 L1MB3_dup10003|chr10:12362082-12362340:-|1.0046664664310585|0.0044910556215817|7.81|151.0|9|3|sense L1MB3_dup10003|chr10:12362082-12362340:-|1.0046664664310585|0.0044910556215817|7.81|151.0|9|3|sense L1MB3_dup10003|chr10:12362082-12362340:-|1.0046664664310585|0.0044910556215817|7.81|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 495.27301025390625 2 495.271104 988.527655 NaN NaN NaN NaN NaN NaN NaN 78.087 1 81.709 81.209 82.209 3.6216 0 0 0 0.40625 1 18476 18476 2.3027 1.5091 1 39001 10309 24694 24705 44259 44259 0.032932573564494305 RTAILPATRAP 11 Unmodified _RTAILPATRAP_ 0 0 0 REV__ENSG00000101400.6,SNTA1,chr20,-,I3.1,33412783,33417718|40|6.31|1|intron REV__ENSG00000101400.6,SNTA1,chr20,-,I3.1,33412783,33417718|40|6.31|1|intron MSMS UPN48_class_I_Rep_3 7 583.8557739257812 2 583.853847 1165.69314 NaN NaN NaN NaN NaN NaN NaN 107.71 1 111.39 110.89 111.89 3.6813 0 0 0 0.37931 1 25410 25410 7.1017 0.37856 1 + 39002 18160 24695 24706 44260 44260 0.116921874169293 RTAKMLFM 8 Unmodified _RTAKMLFM_ 0 0 0 ENST00000318887.7_1_3:88199128-88202400:+|nuORF ENST00000318887.7_1_3:88199128-88202400:+|nuORF ENST00000318887.7_1_3:88199128-88202400:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 499.9036560058594 2 499.269716 996.524878 -0.29598 -0.00014777 -0.71905 -0.000359 -1.015 -0.00050678 499.26926989495195 13.471 0.18799 13.471 13.393 13.581 0 28 22 2 0 0 0 0.72333 1 398 398 0.79363 0.79363 1 30281 39003 6145 24696 24707 44261 44261 0.026476659072841358 RTALLCMF 8 Unmodified _RTALLCMF_ 0 0 0 REV__L1PREC2_dup5566|chr11:33261216-33262031:-|6.45588300968408|0.0960968567154628|6.07|151.0|56|3|anti-sense REV__L1PREC2_dup5566|chr11:33261216-33262031:-|6.45588300968408|0.0960968567154628|6.07|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_2 3 477.7501220703125 2 477.748616 953.482679 NaN NaN NaN NaN NaN NaN NaN 37.735 1 41.123 40.623 41.623 3.3879 0 0 0 0.40581 1 7228 7228 2.8892 0 1 + 39004 25981 24697 24708 44262 44262 0.004076904988892238 RTAPRKDL 8 Unmodified _RTAPRKDL_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|34|1|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|34|1|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|34|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 478.78533935546875 2 478.785433 955.556313 0.24704 0.00011828 -0.21914 -0.00010492 0.027897 1.3357E-05 478.7852967567092 83.329 0.62408 86.741 86.393 87.017 3.4116 130 77 2 0 0 0 0.82752 1 20722 20722 1.8442 0 1 171860 39005 8408 24698 24709 44263 44263 0.07675698257230579 RTAQEVETY 9 Unmodified _RTAQEVETY_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;EIF4A1-DDX5|1|fusion;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 548.76708984375 2 548.767103 1095.51965 0.096442 5.2924E-05 0.088638 4.8642E-05 0.18508 0.00010157 548.7671731735276 28.328 0.2404 28.328 28.178 28.418 0 23 15 2 0 0 0 0.24936 1 4340 4340 17.113 4.5813 1 48084 39006 662 24699 24710 44264 44264 -0.02428643149983145 RTAQEVETY 9 Unmodified _RTAQEVETY_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;EIF4A1-DDX5|1|fusion;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MSMS UPN46_class_I_Rep_3 1 548.8348999023438 2 548.767103 1095.51965 NaN NaN NaN NaN NaN NaN NaN 28.539 1 28.539 28.039 29.039 0 0 0 0 0.28608 1 4396 4396 11.495 0.67078 1 39007 662 24699 24710 44265 44265 -0.02428643149983145 RTAQEVETY 9 Unmodified _RTAQEVETY_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;EIF4A1-DDX5|1|fusion;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 548.767103 1095.51965 0.55611 0.00030518 3.6783 0.0020185 4.2344 0.0023237 548.7681309103613 24.823 0.032631 28.39 28.374 28.407 3.5667 -0.022636 0.0034926 NaN 17.113 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 25132 39008 662 24699 24710 -0.02428643149983145 RTAQEVETY 9 Unmodified _RTAQEVETY_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;EIF4A1-DDX5|1|fusion;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5 ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENST00000581230.5_1_17:62498125-62502378:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 548.767103 1095.51965 0.53475 0.00029346 4.1212 0.0022616 4.656 0.0025551 549.2719019682128 24.883 0.052929 28.519 28.471 28.524 3.6363 0.10664 0.0039788 NaN 17.113 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 41776 39009 662 24699 24710 -0.02428643149983145 RTCLTTMKIVD 11 Unmodified _RTCLTTMKIVD_ 0 0 0 REV__L1MD3_dup4171|chr15:55875618-55876805:+|1.1975968689585268|0.0389969155842226|4.94|151.0|10|1|sense REV__L1MD3_dup4171|chr15:55875618-55876805:+|1.1975968689585268|0.0389969155842226|4.94|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 640.8370361328125 2 640.838691 1279.66283 NaN NaN NaN NaN NaN NaN NaN 68.647 1 72.098 71.598 72.598 3.4517 0 0 0 0.38417 1 15867 15867 4.1895 1.1943 1 + 39010 27481 24700 24711 44266 44266 0.034183246452130334 RTCQQHFHL 9 Unmodified _RTCQQHFHL_ 0 0 0 REV__L1MB4_dup671|chr2:37153516-37154013:-|1.0324357882733652|0.0336665829579755|4.94|151.0|37|3|anti-sense REV__L1MB4_dup671|chr2:37153516-37154013:-|1.0324357882733652|0.0336665829579755|4.94|151.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 585.2845458984375 2 585.285274 1168.556 NaN NaN NaN NaN NaN NaN NaN 20.122 1 20.122 19.622 20.622 0 0 0 0 0.40038 1 2038 2038 0.6015 0 1 + 39011 24860 24701 24712 44267 44267 -0.02154044734265881 RTDAILLGHY 10 Unmodified _RTDAILLGHY_ 0 0 0 ENST00000474457.1_1_6:52958219-52962625:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9 ENST00000474457.1_1_6:52958219-52962625:+|nuORF ENST00000474457.1_1_6:52958219-52962625:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 579.8167724609375 2 579.81693 1157.61931 0.051589 2.9912E-05 -0.20296 -0.00011768 -0.15137 -8.7769E-05 579.8168103900558 43.692 0.66215 47.387 47.098 47.76 3.6951 65 39 2 0 0 0 0.41414 4 8999 8962;8985;8999;9033 18.373 7.5736 1 86182 39012 1999 24702 24713 44268;44269;44270;44271 44270 0.046802192546238075 RTDAILLGHY 10 Unmodified _RTDAILLGHY_ 0 0 0 ENST00000474457.1_1_6:52958219-52962625:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9 ENST00000474457.1_1_6:52958219-52962625:+|nuORF ENST00000474457.1_1_6:52958219-52962625:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 579.8175659179688 2 579.81693 1157.61931 0.16551 9.5968E-05 -0.30479 -0.00017672 -0.13927 -8.0752E-05 579.8167993843434 44.165 0.52112 47.52 47.209 47.73 3.3556 40 28 2 0 0 0 0.55949 2 9160 9106;9160 4.1895 1.4543 1 69615 39013 1999 24702 24713 44272;44273 44273 0.046802192546238075 RTDAILLGHY 10 Unmodified _RTDAILLGHY_ 0 0 0 ENST00000474457.1_1_6:52958219-52962625:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9 ENST00000474457.1_1_6:52958219-52962625:+|nuORF ENST00000474457.1_1_6:52958219-52962625:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 579.8175659179688 2 579.81693 1157.61931 0.18267 0.00010591 -0.021397 -1.2406E-05 0.16127 9.3508E-05 579.8169436626125 44.394 0.55782 47.638 47.205 47.763 3.2441 55 34 2 0 0 0 0.4561 3 9301 9235;9284;9301 15.248 5.8654 1 81020 39014 1999 24702 24713 44274;44275;44276 44276 0.046802192546238075 RTDAILLGHY 10 Unmodified _RTDAILLGHY_ 0 0 0 ENST00000474457.1_1_6:52958219-52962625:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9 ENST00000474457.1_1_6:52958219-52962625:+|nuORF ENST00000474457.1_1_6:52958219-52962625:+|nuORF MSMS UPN47_class_I_Rep_3 4 579.8170776367188 2 579.81693 1157.61931 NaN NaN NaN NaN NaN NaN NaN 44.522 1 47.767 47.267 48.267 3.2441 0 0 0 0.53105 1 9345 9345 2.4985 0 1 39015 1999 24702 24713 44277 44277 0.046802192546238075 RTDEPRDLVI 10 Unmodified _RTDEPRDLVI_ 0 0 0 REV__nc|ENSG00000198198|Q5T011-5|SZT2 REV__nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-MSMS UPN47_class_I_Rep_2 3 405.5564270019531 3 405.222693 1212.64625 -0.7336 -0.00029727 -0.8885 -0.00036004 -1.6221 -0.00065731 405.2224625480214 47.506 0.83852 50.855 50.209 51.048 3.3492 175 64 4 0 0 0 0.55448 1 10048 10048 2.6312 0.88896 1 461230 + 39016 21116 24703 24714 44278 44278 0.04843283075138061 RTDHMLGHNR 10 Unmodified _RTDHMLGHNR_ 0 0 0 L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|155|3|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|155|3|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|155|3|sense MSMS UPN46_class_I_Rep_3 1 412.8714294433594 3 412.872 1235.59417 NaN NaN NaN NaN NaN NaN NaN 16.856 1 16.856 16.356 17.356 0 0 0 0 0.53105 1 1235 1235 1.7423 0 1 39017 8559 24704 24715 44279 44279 -0.014201588196101511 RTDPPVEAV 9 Unmodified _RTDPPVEAV_ 0 0 0 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-SECPEP UPN47_class_I_Rep_1 2 492.31036376953125 2 492.261456 982.50836 0.1478 7.2755E-05 3.0894 0.0015208 3.2372 0.0015936 492.2648310358766 57.437 0.71118 60.874 60.578 61.289 3.437 114 60 3 0 0 0 0.11959 1 13168 13168 7.9102 0 1 122990 + 39018 21433 24705 24716 44280 44280 0.016405795465288975 RTEEALQLY 9 Unmodified _RTEEALQLY_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_1 2 561.7930297851562 2 561.793121 1121.57169 0.10595 5.952E-05 -0.047033 -2.6423E-05 0.058914 3.3098E-05 561.7929788639779 45.054 0.82262 48.754 48.504 49.327 3.6999 118 47 3 0 0 0 0.14216 4 9430 9388;9430;9468;9507 26.268 3.454 1 344460 39019 4690 24706 24717 44281;44282;44283;44284 44282 0.0157652026375672 RTEEALQLY 9 Unmodified _RTEEALQLY_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_2 3 561.7930297851562 2 561.793121 1121.57169 0.22879 0.00012853 -0.22751 -0.00012781 0.001276 7.1683E-07 561.7928454454441 45.494 0.8614 48.847 48.499 49.361 3.3534 126 53 3 0 0 0 0.12096 5 9584 9543;9584;9627;9669;9680 29.841 3.5724 1 316210 39020 4690 24706 24717 44285;44286;44287;44288;44289 44286 0.0157652026375672 RTEEALQLY 9 Unmodified _RTEEALQLY_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-MSMS UPN47_class_I_Rep_3 4 561.7930297851562 2 561.793121 1121.57169 0.25054 0.00014075 -0.17577 -9.8748E-05 0.074773 4.2007E-05 561.7929340683647 45.558 0.8134 48.802 48.48 49.293 3.2441 119 48 3 0 0 0 0.095207 2 9667 9667;9712 34.932 2.1464 1 325360 39021 4690 24706 24717 44290;44291 44290 0.0157652026375672 RTEFCFHF 8 Unmodified _RTEFCFHF_ 0 0 0 REV__AluJb_dup28142|chr3:195433929-195434228:-|1.0635497154628375|0.0041140463907316|8.01|151.0|15|2|anti-sense REV__AluJb_dup28142|chr3:195433929-195434228:-|1.0635497154628375|0.0041140463907316|8.01|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7433471679688 2 543.744919 1085.47529 NaN NaN NaN NaN NaN NaN NaN 113.25 1 116.76 116.26 117.26 3.5171 0 0 0 0.40404 1 27538 27538 5.2307 0.90143 1 + 39022 16934 24707 24718 44292 44292 -0.06403325777182545 RTELFLFLFYF 11 Unmodified _RTELFLFLFYF_ 0 0 0 REV__AluJr4_dup17539|chr17:45401060-45401368:+|1.276031872644363|0.3762831450217314|1.76|151.0|17|1|anti-sense REV__AluJr4_dup17539|chr17:45401060-45401368:+|1.276031872644363|0.3762831450217314|1.76|151.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.27093505859375 3 499.270984 1494.79112 NaN NaN NaN NaN NaN NaN NaN 18.376 1 18.376 17.876 18.876 0 0 0 0 0.38417 1 1598 1598 0.094841 0 1 + 39023 17072 24708 24719 44293 44293 0.06351951222268326 RTERFRRV 8 Unmodified _RTERFRRV_ 0 0 0 REV__nc|ENSG00000020922|P49959-2|MRE11 REV__nc|ENSG00000020922|P49959-2|MRE11 MSMS UPN46_class_I_Rep_3 1 560.3018188476562 2 560.328331 1118.64211 NaN NaN NaN NaN NaN NaN NaN 75.814 1 75.814 75.314 76.314 0 0 0 0 0.40625 1 17650 17650 2.3027 0.4585 1 + 39024 17605 24709 24720 44294 44294 0.08753283162741354 RTETYLAEA 9 Unmodified _RTETYLAEA_ 0 0 0 REV__ENSG00000128408|ENST00000614167|RIBC2 REV__ENSG00000128408|ENST00000614167|RIBC2 MULTI-MSMS UPN47_class_I_Rep_1 2 527.7680053710938 2 527.264196 1052.51384 0.3349 0.00017658 2.1939 0.0011568 2.5288 0.0013334 527.2658813772105 75.247 0.58673 78.65 78.371 78.958 3.4034 115 52 3 0 0 0 0.37599 1 18518 18518 9.3831 1.2276 1 115960 + 39025 18896 24710 24721 44295 44295 -0.01031741661677188 RTFHIWCCM 9 Unmodified _RTFHIWCCM_ 0 0 0 REV__L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|218|3|anti-sense REV__L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|218|3|anti-sense MSMS UPN47_class_I_Rep_2 3 598.7605590820312 2 598.761732 1195.50891 NaN NaN NaN NaN NaN NaN NaN 78.819 1 82.175 81.675 82.675 3.3554 0 0 0 0.40038 1 19592 19592 0.6015 0.076735 1 + 39026 29239 24711 24722 44296 44296 -0.08102363601301477 RTFHTIGF 8 Unmodified _RTFHTIGF_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1;ENSG00000152518|ENST00000282388|ZFP36L2 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 489.7613525390625 2 489.761426 977.5083 0.17204 8.4259E-05 0.017625 8.6321E-06 0.18967 9.2891E-05 489.76128499844395 41.355 0.98618 44.861 44.353 45.339 3.506 211 92 3 0 0 0 0.82752 5 7426 7426;7464;7501;7540;7577 65.235 11.659 1 526670 39027 3622 24712 24723 44297;44298;44299;44300;44301 44297 0.018646243371904347 RTFHTIGF 8 Unmodified _RTFHTIGF_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1;ENSG00000152518|ENST00000282388|ZFP36L2 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 489.7612609863281 2 489.761426 977.5083 0.20418 0.0001 -0.012985 -6.3593E-06 0.1912 9.3642E-05 489.7613082920762 40.95 1.2493 44.701 44.24 45.489 3.7508 255 131 3 0 0 0 0.82752 6 7345 7345;7383;7419;7453;7488;7524 69.105 11.659 1 731630 39028 3622 24712 24723 44302;44303;44304;44305;44306;44307 44302 0.018646243371904347 RTFHTIGF 8 Unmodified _RTFHTIGF_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1;ENSG00000152518|ENST00000282388|ZFP36L2 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 489.7611999511719 2 489.761426 977.5083 0.15356 7.5208E-05 0.01679 8.2232E-06 0.17035 8.3431E-05 489.761301116491 41.051 1.1191 44.697 44.194 45.313 3.6458 267 111 3 0 0 0 0.82752 6 7282 7282;7319;7352;7390;7427;7462 65.235 16.22 1 605970 39029 3622 24712 24723 44308;44309;44310;44311;44312;44313 44308 0.018646243371904347 RTFKLEKY 8 Unmodified _RTFKLEKY_ 0 0 0 REV__L1PA4_dup10704|chr15:90635806-90637568:+|1.075369459109076|0.2854099972486092|1.91|151.0|1|1|sense REV__L1PA4_dup10704|chr15:90635806-90637568:+|1.075369459109076|0.2854099972486092|1.91|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 542.8131713867188 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 113.32 1 116.95 116.45 117.45 3.6314 0 0 0 0.40625 1 27526 27526 2.3027 0 1 + 39030 29589 24713 24724 44314 44314 0.06922022231287883 RTFKNPNKA 9 Unmodified _RTFKNPNKA_ 0 0 0 REV__L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|170|3|sense REV__L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|170|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.3041381835938 2 538.30399 1074.59343 -0.071651 -3.857E-05 0.15597 8.3961E-05 0.084321 4.539E-05 538.3040621670987 25.547 1.0206 29.297 29.021 30.041 3.7495 167 91 3 0 0 0 0.47493 1 3498 3498 3.2813 1.2216 1 208950 + 39031 29893 24714 24725 44315 44315 0.05911369802970512 RTFLIKWNH 9 Unmodified _RTFLIKWNH_ 0 0 0 L1MB7_dup19956|chr17:45577837-45578225:+|3.2241638319749657|0.1522485864358718|4.4|151.0|17|1|anti-sense L1MB7_dup19956|chr17:45577837-45578225:+|3.2241638319749657|0.1522485864358718|4.4|151.0|17|1|anti-sense L1MB7_dup19956|chr17:45577837-45578225:+|3.2241638319749657|0.1522485864358718|4.4|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 405.524169921875 3 405.564614 1213.67201 NaN NaN NaN NaN NaN NaN NaN 59.763 1 62.928 62.428 63.428 3.1651 0 0 0 0.40177 1 13986 13986 0.26902 0 1 39032 10783 24715 24726 44316 44316 0.07372222108074311 RTFPFSLQY 9 Unmodified _RTFPFSLQY_ 0 0 0 ENSG00000171150|ENST00000394861|SOCS5 ENSG00000171150|ENST00000394861|SOCS5 ENSG00000171150|ENST00000394861|SOCS5 MULTI-MSMS UPN48_class_I_Rep_1 5 579.8009033203125 2 579.800749 1157.58694 0.48478 0.00028107 0.074148 4.2991E-05 0.55892 0.00032406 579.8006625639779 66.705 0.73773 70.157 69.74 70.478 3.4516 99 47 3 0 0 0 0.073198 5 15197 15174;15197;15235;15279;15339 40.239 8.0484 1 359200 39033 4509 24716 24727 44317;44318;44319;44320;44321 44318 0.01445431851630019 RTFPFSLQY 9 Unmodified _RTFPFSLQY_ 0 0 0 ENSG00000171150|ENST00000394861|SOCS5 ENSG00000171150|ENST00000394861|SOCS5 ENSG00000171150|ENST00000394861|SOCS5 MULTI-MSMS UPN48_class_I_Rep_2 6 579.801025390625 2 579.800749 1157.58694 0.49987 0.00028983 -0.09988 -5.791E-05 0.39999 0.00023192 579.8005544675719 66.471 0.70522 69.957 69.66 70.365 3.4866 102 51 3 0 0 0 0.053261 3 15222 15141;15181;15222 47.594 9.5332 1 273290 39034 4509 24716 24727 44322;44323;44324 44324 0.01445431851630019 RTFPFSLQY 9 Unmodified _RTFPFSLQY_ 0 0 0 ENSG00000171150|ENST00000394861|SOCS5 ENSG00000171150|ENST00000394861|SOCS5 ENSG00000171150|ENST00000394861|SOCS5 MULTI-MSMS UPN48_class_I_Rep_3 7 579.8011474609375 2 579.800749 1157.58694 0.53037 0.00030751 0.14503 8.4091E-05 0.6754 0.0003916 579.8006807280474 66.352 0.74944 69.859 69.56 70.31 3.5077 119 53 3 0 0 0 0.014369 7 15060 15007;15024;15060;15097;15100;15146;15177 67.081 18.735 1 298670 39035 4509 24716 24727 44325;44326;44327;44328;44329;44330;44331 44327 0.01445431851630019 RTFPRIRRH 9 Unmodified _RTFPRIRRH_ 0 0 0 ENST00000577839.1_1_17:61766126-61767181:+|nuORF;ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3 ENST00000577839.1_1_17:61766126-61767181:+|nuORF ENST00000577839.1_1_17:61766126-61767181:+|nuORF MSMS UPN47_class_I_Rep_2 3 619.8718872070312 2 619.870697 1237.72684 NaN NaN NaN NaN NaN NaN NaN 85.688 1 89.121 88.621 89.621 3.4329 0 0 0 0.4007 1 21319 21319 0.52476 0 1 39036 5482 24717 24728 44332 44332 0.11748653699351053 RTFSVGFYNF 10 Unmodified _RTFSVGFYNF_ 0 0 0 L1MEd_dup9808|chr7:94523061-94524701:+|1.047722532286527|0.1673024400011546|2.65|151.0|81|1|anti-sense L1MEd_dup9808|chr7:94523061-94524701:+|1.047722532286527|0.1673024400011546|2.65|151.0|81|1|anti-sense L1MEd_dup9808|chr7:94523061-94524701:+|1.047722532286527|0.1673024400011546|2.65|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_3 4 619.3019409179688 2 619.303655 1236.59276 NaN NaN NaN NaN NaN NaN NaN 51.466 1 54.682 54.182 55.182 3.2163 0 0 0 0.53105 1 11456 11456 1.3295 0 1 39037 13223 24718 24729 44333 44333 -0.016074696367240904 RTFVFNSHRC 10 Unmodified _RTFVFNSHRC_ 0 0 0 L1MB7_dup8790|chr7:75093409-75093893:-|3.366138824681661|0.4657932346929599|2.85|151.0|29|3|anti-sense;L1MB7_dup8788|chr7:74850248-74850732:+|2.2435571780451893|0.2713336067266699|3.05|151.0|29|3|anti-sense L1MB7_dup8790|chr7:75093409-75093893:-|3.366138824681661|0.4657932346929599|2.85|151.0|29|3|anti-sense L1MB7_dup8790|chr7:75093409-75093893:-|3.366138824681661|0.4657932346929599|2.85|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_3 7 633.811279296875 2 633.811656 1265.60876 NaN NaN NaN NaN NaN NaN NaN 44.73 1 48.367 47.867 48.867 3.6372 0 0 0 0.53105 1 8483 8483 2.4985 1.0166 1 39038 10885 24719 24730 44334 44334 -0.013420866714568547 RTFYHFTY 8 Unmodified _RTFYHFTY_ 0 0 0 L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|143|3|anti-sense L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|143|3|anti-sense L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|143|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.7701416015625 2 567.771991 1133.52943 NaN NaN NaN NaN NaN NaN NaN 22.479 1 26.153 25.653 26.653 3.6749 0 0 0 0.40604 1 2619 2619 2.5775 0 1 39039 11688 24720 24731 44335 44335 -0.031994103539545904 RTGRLLVQ 8 Unmodified _RTGRLLVQ_ 0 0 0 L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|156|2|anti-sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|156|2|anti-sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|156|2|anti-sense MSMS UPN48_class_I_Rep_2 6 471.79608154296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.197 1 70.693 70.193 71.193 3.4964 0 0 0 0.40625 1 15411 15411 2.3027 0 1 39040 9926 24721 24732 44336 44336 0.10392288636910507 RTGRRLLFS 9 Unmodified _RTGRRLLFS_ 0 0 0 REV__L1M3_dup954|chr3:15779937-15781218:+|9.881395888945864|0.0409587408961101|7.91|151.0|1|1|sense REV__L1M3_dup954|chr3:15779937-15781218:+|9.881395888945864|0.0409587408961101|7.91|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.331787109375 2 553.333082 1104.65161 0.41135 0.00022761 -0.97664 -0.00054041 -0.56529 -0.00031279 553.3324159561023 91.45 0.32709 91.45 91.232 91.559 0 45 28 2 0 0 0 0.49026 1 22044 22044 1.6526 0.17072 1 415690 + 39041 24310 24722 24733 44337 44337 0.10347051448275124 RTGRRLLFS 9 Unmodified _RTGRRLLFS_ 0 0 0 REV__L1M3_dup954|chr3:15779937-15781218:+|9.881395888945864|0.0409587408961101|7.91|151.0|1|1|sense REV__L1M3_dup954|chr3:15779937-15781218:+|9.881395888945864|0.0409587408961101|7.91|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 553.333082 1104.65161 0.50769 0.00028092 -1.5215 -0.00084188 -1.0138 -0.00056096 553.8336293909013 87.475 0.03598 91.093 91.078 91.114 3.6187 -0.27811 -0.00037251 NaN 1.6526 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 41617 + 39042 24310 24722 24733 0.10347051448275124 RTGTRPVL 8 Unmodified _RTGTRPVL_ 0 0 0 ENSG00000177030.17,DEAF1,chr11,-,I18.1,646597,651161|61|5.89|1|intron ENSG00000177030.17,DEAF1,chr11,-,I18.1,646597,651161|61|5.89|1|intron ENSG00000177030.17,DEAF1,chr11,-,I18.1,646597,651161|61|5.89|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 450.2745361328125 2 450.274701 898.534849 0.1859 8.3705E-05 -0.063269 -2.8488E-05 0.12263 5.5217E-05 450.2746264899191 88.367 0.13177 88.367 88.289 88.421 0 30 12 3 0 0 0 0.82752 1 21224 21224 3.5965 0 1 562050 39043 4777 24723 24734 44338 44338 0.08152313228504227 RTHEKTKM 8 Unmodified _RTHEKTKM_ 0 0 0 REV__ENSG00000206530|ENST00000393845|CFAP44 REV__ENSG00000206530|ENST00000393845|CFAP44 MSMS UPN47_class_I_Rep_1 2 515.775634765625 2 515.776751 1029.53895 NaN NaN NaN NaN NaN NaN NaN 77.513 1 80.942 80.442 81.442 3.4289 0 0 0 0.40659 1 19235 19235 1.8442 0 1 + 39044 21233 24724 24735 44339 44339 0.02536034659942743 RTIAFASTF 9 Unmodified _RTIAFASTF_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 507.7673034667969 2 507.274367 1012.53418 0.14132 7.1689E-05 -0.042194 -2.1404E-05 0.099128 5.0285E-05 507.2741821419904 52.89 0.79748 56.449 56.044 56.841 3.5585 59 47 2 0 0 0 0.095207 3 11779 11779;11823;11829 34.932 3.6637 1 147430 39045 734 24725 24736 44340;44341;44342 44340 0.028414737888056152 RTIAFASTF 9 Unmodified _RTIAFASTF_ 0 0 0 ENSG00000007350|ENST00000369915|TKTL1;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 507.767333984375 2 507.274367 1012.53418 0.29508 0.00014968 -0.13101 -6.6457E-05 0.16407 8.3227E-05 507.2741484063387 53.315 0.78668 56.509 56.219 57.005 3.1948 58 45 2 0 0 0 0.088679 2 12056 12014;12056 36.506 5.2379 1 152450 39046 734 24725 24736 44343;44344 44344 0.028414737888056152 RTIAPIIGR 9 Unmodified _RTIAPIIGR_ 0 0 0 ENSG00000096401|ENST00000371477|CDC5L ENSG00000096401|ENST00000371477|CDC5L ENSG00000096401|ENST00000371477|CDC5L MULTI-MSMS UPN46_class_I_Rep_3 1 498.81964111328125 2 498.819276 995.623999 0.2631 0.00013124 0.13918 6.9426E-05 0.40228 0.00020066 498.8192297609205 39.684 0.9233 39.684 39.286 40.209 0 201 93 3 0 0 0 0.0053074 5 7676 7571;7610;7642;7676;7713 96.367 12.938 1 673830 39047 1425 24726 24737 44345;44346;44347;44348;44349 44348 0.1260114818803686 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 559.3057250976562 2 559.305667 1116.59678 0.37823 0.00021155 -0.067777 -3.7908E-05 0.31046 0.00017364 559.3054839676896 71.676 0.13145 75.051 75 75.132 3.3751 16 11 2 0 0 0 0.40701 1 17491 17491 7.609 0.88579 1 55498 39048 5773 24727 24738 44350 44350 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 559.3047485351562 2 559.305667 1116.59678 0.37976 0.0002124 -1.3297 -0.00074371 -0.94993 -0.0005313 559.3050261886386 71.951 0.15883 75.326 75.215 75.374 3.3751 19 13 2 0 0 0 0.40701 1 17564 17564 7.609 0.88579 1 37043 39049 5773 24727 24738 44351 44351 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 559.3049926757812 2 559.305667 1116.59678 0.42531 0.00023788 -0.52971 -0.00029627 -0.10439 -5.8389E-05 559.3054383875168 71.932 0.41142 75.222 74.953 75.364 3.2899 40 34 2 0 0 0 0.279 2 17615 17581;17615 15.248 4.4246 1 72288 39050 5773 24727 24738 44352;44353 44353 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 559.305908203125 2 559.305667 1116.59678 0.44933 0.00025131 0.15498 8.6681E-05 0.60431 0.00033799 559.305452875413 72.099 0.15049 75.318 75.203 75.354 3.2188 23 14 2 0 0 0 0.11355 1 17713 17713 31.268 4.3847 1 65933 39051 5773 24727 24738 44354 44354 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 559.30517578125 2 559.305667 1116.59678 0.44967 0.0002515 -0.90065 -0.00050374 -0.45098 -0.00025223 559.3052584158169 72.214 0.20813 75.432 75.354 75.562 3.2188 23 17 2 0 0 0 0.33908 3 17753 17753;17759;17795 11.495 2.7493 1 66525 39052 5773 24727 24738 44355;44356;44357 44355 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 559.3057861328125 2 559.305667 1116.59678 0.5025 0.00028105 -0.15396 -8.6111E-05 0.34854 0.00019494 559.3054416328199 72.069 0.36095 75.542 75.377 75.738 3.4732 60 33 2 0 0 0 0.279 1 16867 16867 15.248 0.41021 1 170930 39053 5773 24727 24738 44358 44358 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 559.3055419921875 2 559.305667 1116.59678 0.48759 0.00027271 -0.2666 -0.00014911 0.22099 0.0001236 559.30546005013 71.927 0.66254 75.478 75.154 75.816 3.5505 96 71 2 0 0 0 0.35123 1 16768 16768 10.8 0.72558 1 112560 39054 5773 24727 24738 44359 44359 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 559.8067626953125 2 559.305667 1116.59678 0.46987 0.0002628 0.099968 5.5913E-05 0.56984 0.00031871 559.3056493067855 71.726 0.23328 75.253 75.167 75.4 3.5266 30 21 2 0 0 0 0.40701 1 16693 16693 7.609 0.88579 1 120510 39055 5773 24727 24738 44360 44360 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 559.305667 1116.59678 0.37823 0.00021155 -0.067777 -3.7908E-05 0.31046 0.00017364 559.3054839676896 71.676 0.13145 75.051 75 75.132 3.3751 -0.15599 -0.0001326 NaN 31.268 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 55498 39056 5773 24727 24738 0.04314619856995705 RTIGFFYTL 9 Unmodified _RTIGFFYTL_ 0 0 0 ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENSG00000257923.12,CUX1,chr7,+,I4.1,101913439,101916114|37|8.02|1|intron;ENST00000560541.5_1_7:101556607-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF ENST00000487284.2_1_7:101917466-101926379:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 559.305667 1116.59678 0.46926 0.00026246 0.10626 5.9431E-05 0.57552 0.00032189 559.3056380019626 72.037 0.39247 75.563 75.4 75.793 3.5266 0.13585 0.00029119 NaN 15.248 78 41 2 NaN NaN NaN NaN 0 NaN NaN 0 151850 39057 5773 24727 24738 0.04314619856995705 RTINFQLR 8 Unmodified _RTINFQLR_ 0 0 0 REV__ENST00000341509.9_1_15:66840934-66844112:-|nuORF REV__ENST00000341509.9_1_15:66840934-66844112:-|nuORF MSMS UPN46_class_I_Rep_3 1 524.298095703125 2 524.306532 1046.59851 NaN NaN NaN NaN NaN NaN NaN 13.169 1 13.169 12.669 13.669 0 0 0 0 0.39242 1 313 313 10.824 0.75 1 + 39058 21828 24728 24739 44361 44361 0.07707673665595394 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7960510253906 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 30.132 1 33.877 33.377 34.377 3.7449 0 0 0 0.40738 1 4885 4885 0.79363 0 1 39059 16432 24729 24740 44362 44362 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 471.79547119140625 2 471.795801 941.577048 0.11803 5.5686E-05 -0.27035 -0.00012755 -0.15232 -7.1866E-05 471.7954813372479 58.412 0.29914 61.829 61.646 61.945 3.4171 25 20 2 0 0 0 0.72333 1 13451 13451 2.3027 0 1 726920 39060 16432 24729 24740 44363 44363 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.79571533203125 2 471.795801 941.577048 0.15177 7.1603E-05 -0.22514 -0.00010622 -0.073374 -3.4617E-05 471.79575525154274 52.928 0.14667 56.254 56.198 56.344 3.3266 11 8 2 0 0 0 0.82752 1 11840 11840 0.79363 0 1 425660 39061 16432 24729 24740 44364 44364 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7952575683594 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 30.815 1 34.297 33.797 34.797 3.4821 0 0 0 0.40738 1 5133 5133 0.79363 0 1 39062 16432 24729 24740 44365 44365 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.802734375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 30.854 1 34.336 33.836 34.836 3.4821 0 0 0 0.40738 1 5145 5145 0.79363 0 1 39063 16432 24729 24740 44366 44366 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 32.973 1 36.427 35.927 36.927 3.4547 0 0 0 0.40738 1 5781 5781 0.79363 0 1 39064 16432 24729 24740 44367 44367 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7950439453125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 30.968 1 34.28 33.78 34.78 3.3116 0 0 0 0.40738 1 5216 5216 0.79363 0 1 39065 16432 24729 24740 44368 44368 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7607727050781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 31.383 1 34.682 34.182 35.182 3.2991 0 0 0 0.40738 1 5340 5340 0.79363 0 1 39066 16432 24729 24740 44369 44369 0.10392288636876401 RTKATRPL 8 Unmodified _RTKATRPL_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7952575683594 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 33.616 1 36.891 36.391 37.391 3.2748 0 0 0 0.40738 1 6013 6013 0.79363 0 1 39067 16432 24729 24740 44370 44370 0.10392288636876401 RTKGLTSER 9 Unmodified _RTKGLTSER_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-SECPEP UPN46_class_I_Rep_3 1 524.298095703125 2 524.298904 1046.58326 -0.27459 -0.00014397 -0.68728 -0.00036034 -0.96187 -0.00050431 524.2984848102059 13.142 0.30653 13.142 13.041 13.347 0 72 34 3 0 0 0 0.10927 1 313 313 16.149 1.3108 1 125730 39068 2808 24730 24741 44371 44371 0.06182762077764892 RTKKAQLAA 9 Unmodified _RTKKAQLAA_ 0 0 0 REV__nc|ENSG00000070814|Q13428-5|TCOF1 REV__nc|ENSG00000070814|Q13428-5|TCOF1 MSMS UPN46_class_I_Rep_3 1 493.8459777832031 2 493.808908 985.603263 NaN NaN NaN NaN NaN NaN NaN 73.265 1 73.265 72.765 73.765 0 0 0 0 0.39598 1 16975 16975 1.6526 0.17072 1 + 39069 17808 24731 24742 44372 44372 0.10988557808354926 RTKLGNNK 8 Unmodified _RTKLGNNK_ 0 0 0 L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|26|2|sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|26|2|sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|26|2|sense MSMS UPN48_class_I_Rep_1 5 465.77703857421875 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 73.57 1 77.051 76.551 77.551 3.4812 0 0 0 0.40643 1 17343 17343 2.0598 0 1 39070 15224 24732 24743 44373 44373 0.07307411740168845 RTKPRVTL 8 Unmodified _RTKPRVTL_ 0 0 0 MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|32|2|sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|32|2|sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|32|2|sense MSMS UPN47_class_I_Rep_2 3 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 77.155 1 80.487 79.987 80.987 3.3315 0 0 0 0.40643 1 19127 19127 2.0598 1.2661 1 39071 16060 24733 24744 44374 44374 0.12232861670997863 RTKRGSRGQ 9 Unmodified _RTKRGSRGQ_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MSMS UPN48_class_I_Rep_3 7 523.3032836914062 2 523.302313 1044.59007 NaN NaN NaN NaN NaN NaN NaN 80.653 1 84.316 83.816 84.816 3.6635 0 0 0 0.38916 1 19083 19083 3.2813 0.70383 1 39072 2849 24734 24745 44375 44375 0.0695611974899748 RTKRGWMWN 9 Unmodified _RTKRGWMWN_ 0 0 0 ENSG00000113100|ENST00000231021|CDH9;ENST00000505045.1_1_5:26903562-26988455:-|nuORF ENSG00000113100|ENST00000231021|CDH9 ENSG00000113100|ENST00000231021|CDH9 MSMS UPN46_class_I_Rep_3 1 617.817138671875 2 617.816741 1233.61893 NaN NaN NaN NaN NaN NaN NaN 75.122 1 75.122 74.622 75.622 0 0 0 0 0.39518 1 17448 17448 1.8442 0 1 39073 2030 24735 24746 44376 44376 0.011465210537835446 RTKRHSLLN 9 Unmodified _RTKRHSLLN_ 0 0 0 REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|97|1|anti-sense REV__HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|97|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.835988 1123.65742 0.17779 0.00010007 0.54293 0.00030558 0.72072 0.00040565 562.8363043451186 29.72 0.28028 29.72 29.521 29.801 0 31 21 2 0 0 0 0.5015 1 4717 4717 0.45834 0 1 492780 + 39074 23949 24736 24747 44377 44377 0.10054149959955794 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 506.8531494140625 2 506.853119 1011.69168 0.35388 0.00017936 -0.14355 -7.2758E-05 0.21033 0.00010661 506.85292127319815 108.29 0.55359 111.82 111.36 111.91 3.5333 138 59 4 0 0 0 0.82752 1 26243 26243 0.79363 0 1 28483000 39075 10270 24737 24748 44378 44378 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 506.8536071777344 2 506.853119 1011.69168 0.31529 0.0001598 0.12056 6.1105E-05 0.43584 0.00022091 506.85307937253265 108.25 0.62433 111.79 111.33 111.95 3.5382 130 68 4 0 0 0 0.82752 2 26373 26373;26499 0.79363 0 1 32446000 39076 10270 24737 24748 44379;44380 44379 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MSMS UPN47_class_I_Rep_3 4 506.85321044921875 2 506.853119 1011.69168 NaN NaN NaN NaN NaN NaN NaN 108.44 1 111.98 111.48 112.48 3.5382 0 0 0 0.40738 1 26545 26545 0.79363 0 1 39077 10270 24737 24748 44381 44381 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.85308837890625 2 506.853119 1011.69168 0.21433 0.00010864 0.069679 3.5317E-05 0.28401 0.00014395 506.85303945292736 108.25 0.40982 111.88 111.79 112.2 3.6313 81 37 5 0 0 0 0.82752 1 26200 26200 0.79363 0 1 12772000 39078 10270 24737 24748 44382 44382 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 506.85333251953125 2 506.853119 1011.69168 0.21382 0.00010837 -0.20207 -0.00010242 0.011741 5.9512E-06 506.8529890084001 108.64 0.49441 112.27 112.21 112.7 3.6321 76 57 2 0 0 0 0.82752 1 26307 26307 0.79363 0 1 7331400 39079 10270 24737 24748 44383 44383 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.85101318359375 2 506.853119 1011.69168 0.30964 0.00015694 0.0058349 2.9574E-06 0.31547 0.0001599 506.8530157830152 108.31 0.54762 111.98 111.72 112.27 3.6746 214 61 4 0 0 0 0.82752 1 25768 25768 0.79363 0 1 61188000 39080 10270 24737 24748 44384 44384 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.8532409667969 2 506.853119 1011.69168 0.30957 0.00015691 -0.13204 -6.6927E-05 0.17753 8.998E-05 506.8529028209351 108.77 0.58443 112.44 112.2 112.78 3.6746 120 59 3 0 0 0 0.82752 1 25831 25831 0.79363 0 1 10612000 39081 10270 24737 24748 44385 44385 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 507.2952575683594 2 506.853119 1011.69168 0.27231 0.00013802 0.14293 7.2443E-05 0.41524 0.00021046 506.8530658890199 108.59 0.33267 112.26 112.18 112.51 3.6751 95 38 3 0 0 0 0.72333 1 25791 25791 0.79363 0 1 20161000 39082 10270 24737 24748 44386 44386 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.853119 1011.69168 0.33729 0.00017095 -0.51 -0.0002585 -0.17271 -8.7541E-05 507.3543410611712 108.89 0.17371 112.53 112.4 112.57 3.6355 0.086048 -0.00026831 NaN 0.79363 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2440200 39083 10270 24737 24748 0.18630598118852504 RTKRIILI 8 Unmodified _RTKRIILI_ 0 0 0 L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense L1MB2_dup6363|chr13:41050019-41050566:-|1.865803454771432|0.0451211259114391|5.37|151.0|40|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 506.853119 1011.69168 0.27238 0.00013806 -0.31772 -0.00016104 -0.045345 -2.2983E-05 506.8529208176346 108.85 0.3138 112.53 112.48 112.8 3.6751 0.084935 -7.3393E-05 NaN 0.79363 73 34 3 NaN NaN NaN NaN 0 NaN NaN 0 9270800 39084 10270 24737 24748 0.18630598118852504 RTKRRPIV 8 Unmodified _RTKRRPIV_ 0 0 0 ENSG00000144227|ENST00000272641|NXPH2 ENSG00000144227|ENST00000272641|NXPH2 ENSG00000144227|ENST00000272641|NXPH2 MSMS UPN48_class_I_Rep_2 6 513.3400268554688 2 513.338167 1024.66178 NaN NaN NaN NaN NaN NaN NaN 72.858 1 76.423 75.923 76.923 3.5645 0 0 0 0.40753 1 17078 17078 0.6015 0.076735 1 39085 3345 24738 24749 44387 44387 0.15043659173488777 RTKTHRIP 8 Unmodified _RTKTHRIP_ 0 0 0 REV__ENSG00000104369|ENST00000342232|JPH1 REV__ENSG00000104369|ENST00000342232|JPH1 MSMS UPN46_class_I_Rep_3 1 504.8086853027344 2 504.8067 1007.59885 NaN NaN NaN NaN NaN NaN NaN 55.403 1 55.403 54.903 55.903 0 0 0 0 0.40404 1 12043 12043 5.2307 2.3415 1 + 39086 18256 24739 24750 44388 44388 0.09535093385454729 RTKTNISH 8 Unmodified _RTKTNISH_ 0 0 0 REV__L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|79|3|sense REV__L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|79|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 479.28753662109375 2 478.76724 955.519927 -0.34203 -0.00016376 0.13701 6.5597E-05 -0.20502 -9.8158E-05 478.76720683952067 12.902 0.28758 12.902 12.777 13.064 0 49 24 3 0 0 0 0.72333 1 284 284 1.8442 0 1 176470 + 39087 26560 24740 24751 44389 44389 0.04038821360506972 RTKTRLVP 8 Unmodified _RTKTRLVP_ 0 0 0 ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B ENSG00000189409|ENST00000356026|MMP23B ENSG00000189409|ENST00000356026|MMP23B MSMS UPN47_class_I_Rep_1 2 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.199 1 76.585 76.085 77.085 3.3861 0 0 0 0.40625 1 17960 17960 2.3027 0 1 39088 5277 24741 24752 44390 44390 0.12232861670986495 RTLAIARN 8 Unmodified _RTLAIARN_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS UPN48_class_I_Rep_3 7 457.78021240234375 2 457.780151 913.545748 0.21356 9.7765E-05 -0.051036 -2.3363E-05 0.16253 7.4402E-05 457.78004578722664 81.106 0.325 84.769 84.487 84.812 3.6635 62 40 2 0 0 0 0.82752 1 19170 19170 2.3027 0 1 222980 39089 3488 24742 24753 44391 44391 0.08551715602789045 RTLALLAFDS 10 Unmodified _RTLALLAFDS_ 0 0 0 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 MSMS UPN47_class_I_Rep_2 3 553.8301391601562 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 83.05 1 86.448 85.948 86.948 3.3984 0 0 0 0.53105 1 20698 20698 1.4819 0 1 39090 1556 24743 24754 44392 44392 0.06457701023077789 RTLDNQLFF 9 Unmodified _RTLDNQLFF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MULTI-MSMS UPN48_class_I_Rep_2 6 577.3036499023438 2 577.303655 1152.59276 0.53438 0.0003085 -0.25263 -0.00014584 0.28175 0.00016266 577.3034639069411 61.737 0.96469 65.21 64.801 65.766 3.4738 241 78 4 0 0 0 0.048662 4 13734 13651;13697;13734;13774 49.554 13.048 1 1429400 39091 3147 24744 24755 44393;44394;44395;44396 44395 0.02256530363274578 RTLDNQLFF 9 Unmodified _RTLDNQLFF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MULTI-MSMS UPN48_class_I_Rep_3 7 577.3036499023438 2 577.303655 1152.59276 0.48457 0.00027975 -0.22144 -0.00012784 0.26314 0.00015191 577.3034429678337 61.616 0.98044 65.126 64.656 65.637 3.5104 250 82 4 0 0 0 0.048662 4 13624 13547;13586;13624;13661 49.554 16.109 1 1844700 39092 3147 24744 24755 44397;44398;44399;44400 44399 0.02256530363274578 RTLDNQLFF 9 Unmodified _RTLDNQLFF_ 0 0 0 ENSG00000139626|ENST00000267082|ITGB7;nc|ENSG00000139626|P26010-2|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 ENSG00000139626|ENST00000267082|ITGB7 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 577.303655 1152.59276 0.55942 0.00032295 -0.31203 -0.00018013 0.24739 0.00014282 577.3034056086968 61.849 1.0881 65.316 64.871 65.959 3.4678 0.098765 -5.9623E-05 NaN 49.554 283 93 4 NaN NaN NaN NaN 0 NaN NaN 0 1668500 39093 3147 24744 24755 0.02256530363274578 RTLDSLMQF 9 Oxidation (M) _RTLDSLM(Oxidation (M))QF_ RTLDSLM(1)QF RTLDSLM(56)QF 0 0 1 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000491272.1_1_17:40467765-40469062:-|nuORF;ENST00000462269.1_1_17:40467765-40469390:-|nuORF nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN48_class_I_Rep_2 6 563.7818603515625 2 563.781699 1125.54884 0.41983 0.00023669 -0.43531 -0.00024542 -0.015483 -8.7288E-06 563.781592865455 49.077 0.65401 52.794 52.461 53.115 3.7175 85 42 3 0 0 0 0.033731 1 9877 9877 55.503 11.644 1 284700 39094 4382 24745 24756 44401 44401 140 -0.008908221253477677 RTLDSLMQF 9 Oxidation (M) _RTLDSLM(Oxidation (M))QF_ RTLDSLM(1)QF RTLDSLM(41)QF 0 0 1 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000491272.1_1_17:40467765-40469062:-|nuORF;ENST00000462269.1_1_17:40467765-40469390:-|nuORF nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN48_class_I_Rep_3 7 563.7818603515625 2 563.781699 1125.54884 0.33799 0.00019055 -0.024925 -1.4052E-05 0.31307 0.0001765 563.7816247385144 49.204 0.76024 52.833 52.487 53.248 3.6291 104 55 3 0 0 0 0.071184 1 9842 9842 40.725 17.989 1 347270 39095 4382 24745 24756 44402 44402 140 -0.008908221253477677 RTLDTTLQF 9 Unmodified _RTLDTTLQF_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF nc|ENSG00000134215|Q9UKW4-2|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS UPN48_class_I_Rep_1 5 547.796630859375 2 547.795663 1093.57677 0.47845 0.00026209 0.87252 0.00047796 1.351 0.00074005 547.7960960342984 53.352 0.64044 56.872 56.49 57.13 3.5192 80 46 2 0 0 0 0.081756 3 11183 11098;11140;11183 38.176 4.0731 1 312610 39096 2838 24746 24757 44403;44404;44405 44405 0.03372824126358864 RTLDTTLQF 9 Unmodified _RTLDTTLQF_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF nc|ENSG00000134215|Q9UKW4-2|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS UPN48_class_I_Rep_2 6 547.7965698242188 2 547.795663 1093.57677 0.5483 0.00030036 0.59631 0.00032666 1.1446 0.00062702 547.79591620888 53.199 0.65018 56.809 56.451 57.101 3.6098 73 41 2 0 0 0 0.073198 2 11152 11111;11152 40.239 0.29928 1 333620 39097 2838 24746 24757 44406;44407 44407 0.03372824126358864 RTLDTTLQF 9 Unmodified _RTLDTTLQF_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF nc|ENSG00000134215|Q9UKW4-2|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS UPN48_class_I_Rep_3 7 547.7962036132812 2 547.795663 1093.57677 0.30554 0.00016738 0.76531 0.00041923 1.0709 0.00058661 547.795993895568 53.188 0.79173 56.772 56.424 57.216 3.5836 89 53 2 0 0 0 0.088679 3 11069 11023;11069;11109 36.506 4.2007 1 206740 39098 2838 24746 24757 44408;44409;44410 44409 0.03372824126358864 RTLEKNKKK 9 Unmodified _RTLEKNKKK_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MSMS UPN47_class_I_Rep_1 2 572.8497314453125 2 572.861672 1143.70879 NaN NaN NaN NaN NaN NaN NaN 13.202 1 16.659 16.159 17.159 3.457 0 0 0 0.38784 1 272 272 3.5965 0 1 39099 2391 24747 24758 44411 44411 0.14268473933998393 RTLERKRRK 9 Unmodified _RTLERKRRK_ 0 0 0 ENST00000305105.2_1_7:100865971-100866960:+|nuORF ENST00000305105.2_1_7:100865971-100866960:+|nuORF ENST00000305105.2_1_7:100865971-100866960:+|nuORF MSMS UPN47_class_I_Rep_1 2 621.8949584960938 2 621.896912 1241.77927 NaN NaN NaN NaN NaN NaN NaN 96.997 1 100.77 100.27 101.27 3.7767 0 0 0 0.39518 1 24043 24043 1.8442 0 1 39100 6087 24748 24759 44412 44412 0.16805192042284034 RTLETLIRL 9 Unmodified _RTLETLIRL_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-SECPEP UPN48_class_I_Rep_1 5 557.745849609375 2 557.850773 1113.68699 0.51825 0.0002891 -0.38478 -0.00021465 0.13346 7.4452E-05 557.8505063771207 54.975 0.53196 58.484 58.088 58.62 3.5082 47 35 2 0 0 0 0.11585 1 11711 11711 13.615 1.3742 1 262040 39101 1997 24749 24760 44413 44413 0.13469669185428756 RTLGERRFV 9 Unmodified _RTLGERRFV_ 0 0 0 ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.8325805664062 2 567.330539 1132.64652 0.46309 0.00026272 0.74786 0.00042428 1.211 0.00068701 567.3309208819 86.589 0.24036 86.589 86.369 86.609 0 55 31 3 0 0 0 0.43982 1 20693 20693 5.7319 5.7319 1 2928600 39102 7765 24750 24761 44414 44414 0.08550747585650242 RTLGERRFV 9 Unmodified _RTLGERRFV_ 0 0 0 ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.33056640625 2 567.330539 1132.64652 0.46341 0.00026291 -0.88145 -0.00050007 -0.41804 -0.00023716 567.3298887962327 88.412 0.35521 88.412 88.21 88.566 0 62 35 3 0 0 0 0.47197 1 21210 21210 3.5965 0.31518 1 498850 39103 7765 24750 24761 44415 44415 0.08550747585650242 RTLGERRFV 9 Unmodified _RTLGERRFV_ 0 0 0 ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.3306274414062 2 567.330539 1132.64652 0.4814 0.00027311 -0.04662 -2.6449E-05 0.43478 0.00024666 567.330424180349 81.477 0.44296 85.162 85.022 85.465 3.685 85 54 2 0 0 0 0.49187 1 19317 19317 1.4819 0.15237 1 285160 39104 7765 24750 24761 44416 44416 0.08550747585650242 RTLGERRFV 9 Unmodified _RTLGERRFV_ 0 0 0 ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|13|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 567.330539 1132.64652 0.42935 0.00024358 -0.81893 -0.00046461 -0.38958 -0.00022102 567.3304498715373 84.79 0.018547 88.387 88.372 88.39 3.5973 -0.012189 7.0319E-05 NaN 3.5965 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 148250 39105 7765 24750 24761 0.08550747585650242 RTLHPKTAE 9 Unmodified _RTLHPKTAE_ 0 0 0 L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|43|2|sense;L1PA13_dup8337|chr18:45691755-45694149:+|1.028485596874242|0.0086535636265112|6.89|150.0|19|1|sense L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|43|2|sense L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|43|2|sense MSMS UPN48_class_I_Rep_1 5 526.7977905273438 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 25.877 1 29.443 28.943 29.943 3.5667 0 0 0 0.39598 1 3082 3082 1.6526 0 1 39106 13789 24751 24762 44417 44417 0.05371663566097595 RTLLQIRL 8 Unmodified _RTLLQIRL_ 0 0 0 Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|50|1|anti-sense Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|50|1|anti-sense Tigger1_dup9530|chr13:46000001-46001257:-|1.2623599977953783|0.1128410449215299|3.48|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.8336181640625 2 506.834926 1011.6553 0.12709 6.4412E-05 -0.1361 -6.8982E-05 -0.0090159 -4.5696E-06 506.8347589365335 53.609 1.1164 57.193 56.498 57.615 3.5836 154 81 3 0 0 0 0.82752 1 11273 11273 1.8442 0 1 391240 39107 33215 24752 24763 44418 44418 0.1499372122210616 RTLNINEYDE 10 Unmodified _RTLNINEYDE_ 0 0 0 L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.29931640625 2 633.801674 1265.58879 0.66667 0.00042254 -3.5556 -0.0022536 -2.889 -0.001831 634.2990305584086 74.91 0.083023 78.476 78.436 78.519 3.5658 12 5 3 0 0 0 0.56333 1 17574 17574 1.4819 0 1 201040 39108 12943 24753 24764 44419 44419 -0.03337603921090704 RTLNINEYDE 10 Unmodified _RTLNINEYDE_ 0 0 0 L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 633.801674 1265.58879 0.46798 0.00029661 -5.7045 -0.0036155 -5.2365 -0.0033189 634.2999923817775 75.417 0.048248 78.916 78.898 78.946 3.4996 0.22792 0.00042291 NaN 1.4819 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 132860 39109 12943 24753 24764 -0.03337603921090704 RTLNINEYDE 10 Unmodified _RTLNINEYDE_ 0 0 0 L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 633.801674 1265.58879 0.4906 0.00031094 -7.7372 -0.0049039 -7.2466 -0.0045929 634.2978030045983 75.082 0.040245 78.672 78.642 78.682 3.59 -0.015791 -0.0021538 NaN 1.4819 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 138260 39110 12943 24753 24764 -0.03337603921090704 RTLPHVLAF 9 Unmodified _RTLPHVLAF_ 0 0 0 ENSG00000142102|ENST00000409548|PGGHG;ENST00000409655.5_2_11:289177-290766:+|nuORF;nc|ENSG00000142102|Q32M88-2|PGGHG;ENST00000474221.5_1_11:289135-291269:+|nuORF ENSG00000142102|ENST00000409548|PGGHG ENSG00000142102|ENST00000409548|PGGHG MULTI-MSMS UPN48_class_I_Rep_1 5 527.314208984375 2 527.313826 1052.6131 0.32489 0.00017132 -0.24879 -0.00013119 0.076097 4.0127E-05 527.313674474593 52.615 0.46291 56.134 55.871 56.334 3.5192 61 39 2 0 0 0 0.41587 1 10945 10945 7.1017 2.2047 1 131070 39111 3238 24754 24765 44420 44420 0.08889745813735317 RTLPHVLAF 9 Unmodified _RTLPHVLAF_ 0 0 0 ENSG00000142102|ENST00000409548|PGGHG;ENST00000409655.5_2_11:289177-290766:+|nuORF;nc|ENSG00000142102|Q32M88-2|PGGHG;ENST00000474221.5_1_11:289135-291269:+|nuORF ENSG00000142102|ENST00000409548|PGGHG ENSG00000142102|ENST00000409548|PGGHG MSMS UPN48_class_I_Rep_3 7 527.31396484375 2 527.313826 1052.6131 NaN NaN NaN NaN NaN NaN NaN 52.733 1 56.331 55.831 56.831 3.5979 0 0 0 0.27207 1 10919 10919 12.241 0.60036 1 39112 3238 24754 24765 44421 44421 0.08889745813735317 RTLPHVLAF 9 Unmodified _RTLPHVLAF_ 0 0 0 ENSG00000142102|ENST00000409548|PGGHG;ENST00000409655.5_2_11:289177-290766:+|nuORF;nc|ENSG00000142102|Q32M88-2|PGGHG;ENST00000474221.5_1_11:289135-291269:+|nuORF ENSG00000142102|ENST00000409548|PGGHG ENSG00000142102|ENST00000409548|PGGHG MULTI-MATCH UPN48_class_I_Rep_2 6 2 527.313826 1052.6131 0.44512 0.00023472 -0.16149 -8.5155E-05 0.28363 0.00014956 527.3136317054417 52.519 0.65801 56.158 55.896 56.554 3.639 0.011894 4.6785E-05 NaN 7.1017 80 48 2 NaN NaN NaN NaN 0 NaN NaN 0 120760 39113 3238 24754 24765 0.08889745813735317 RTLPRVLEI 9 Unmodified _RTLPRVLEI_ 0 0 0 THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 548.845703125 2 548.84549 1095.67643 0.47421 0.00026027 0.039852 2.1872E-05 0.51407 0.00028214 548.8454015245841 51.141 1.0563 54.665 54.163 55.219 3.5246 170 73 3 0 0 0 0.279 1 10490 10490 15.248 3.0078 1 700690 39114 4586 24755 24766 44422 44422 0.1324168653097786 RTLPRVLEI 9 Unmodified _RTLPRVLEI_ 0 0 0 THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 548.8456420898438 2 548.84549 1095.67643 0.48302 0.0002651 0.02222 1.2195E-05 0.50524 0.0002773 548.8454114364489 51.27 1.0705 54.938 54.207 55.277 3.6679 166 71 3 0 0 0 0.10225 2 10499 10460;10499 33.445 16.332 1 575530 39115 4586 24755 24766 44423;44424 44424 0.1324168653097786 RTLPRVLEI 9 Unmodified _RTLPRVLEI_ 0 0 0 THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 548.8457641601562 2 548.84549 1095.67643 0.31494 0.00017286 0.13785 7.5659E-05 0.4528 0.00024851 548.8454877369472 51.145 1.0251 54.756 54.254 55.279 3.6105 176 74 3 0 0 0 0.16799 2 10427 10427;10506 23.79 8.5413 1 496940 39116 4586 24755 24766 44425;44426 44425 0.1324168653097786 RTLRARRSPR 10 Unmodified _RTLRARRSPR_ 0 0 0 ENST00000216807.11_1_14:36295630-36302200:+|nuORF ENST00000216807.11_1_14:36295630-36302200:+|nuORF ENST00000216807.11_1_14:36295630-36302200:+|nuORF MSMS UPN46_class_I_Rep_3 1 634.8917846679688 2 634.892161 1267.76977 NaN NaN NaN NaN NaN NaN NaN 78.782 1 78.782 78.282 79.282 0 0 0 0 0.53105 1 18471 18471 1.4819 0 1 39117 5865 24756 24767 44427 44427 0.14659423756779688 RTLRCWRLRRA 11 Unmodified _RTLRCWRLRRA_ 0 0 0 ENSG00000205858|ENST00000401542|LRRC72 ENSG00000205858|ENST00000401542|LRRC72 ENSG00000205858|ENST00000401542|LRRC72 MULTI-SECPEP UPN48_class_I_Rep_2 6 495.9590759277344 3 496.293122 1485.85754 0.27943 0.00013868 0.40449 0.00020075 0.68392 0.00033942 496.29324799276907 95.701 0.68918 99.482 99.001 99.69 3.7804 153 95 2 0 0 0 22.551 1 22758 22758 0.50596 0.50596 1 321700 39118 5563 24757 24768 44428 44428 0.1340430135587667 RTLRCWRLRRA 11 Unmodified _RTLRCWRLRRA_ 0 0 0 ENSG00000205858|ENST00000401542|LRRC72 ENSG00000205858|ENST00000401542|LRRC72 ENSG00000205858|ENST00000401542|LRRC72 MULTI-MATCH UPN47_class_I_Rep_3 4 3 496.293122 1485.85754 0.28101 0.00013946 0.51824 0.0002572 0.79924 0.00039666 496.2933113614508 96.098 0.30079 99.512 99.319 99.62 3.414 0.015029 0.00014527 NaN 0.50596 63 44 2 NaN NaN NaN NaN 0 NaN NaN 0 186120 39119 5563 24757 24768 0.1340430135587667 RTLRGLPALP 10 Unmodified _RTLRGLPALP_ 0 0 0 ENST00000380574.5_2_11:2923688-2923841:+|nuORF ENST00000380574.5_2_11:2923688-2923841:+|nuORF ENST00000380574.5_2_11:2923688-2923841:+|nuORF MSMS UPN48_class_I_Rep_3 7 547.3447265625 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 94.348 1 98.25 97.75 98.75 3.9016 0 0 0 0.53105 1 22358 22358 1.6526 0.17072 1 39120 6488 24758 24769 44429 44429 0.13413106250845885 RTLRPYQR 8 Unmodified _RTLRPYQR_ 0 0 0 REV__ENST00000336314.8_2_5:154195475-154195619:+|nuORF REV__ENST00000336314.8_2_5:154195475-154195619:+|nuORF MSMS UPN48_class_I_Rep_2 6 545.7965087890625 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 84.356 1 88.05 87.55 88.55 3.6937 0 0 0 0.40625 1 20077 20077 2.3027 0 1 + 39121 21795 24759 24770 44430 44430 0.07954478414171717 RTLTKVLAL 9 Unmodified _RTLTKVLAL_ 0 0 0 ENSG00000196455.8,PIK3R4,chr3,-,I11.1,130708493,130716395|28|6.58|2|intron;ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455.8,PIK3R4,chr3,-,I11.1,130708493,130716395|28|6.58|2|intron ENSG00000196455.8,PIK3R4,chr3,-,I11.1,130708493,130716395|28|6.58|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 507.83740234375 2 507.837134 1013.65972 0.22037 0.00011191 0.019001 9.6496E-06 0.23937 0.00012156 507.83708253863995 45.297 0.65284 48.813 48.546 49.199 3.5162 64 47 2 0 0 0 0.16799 1 8712 8712 23.79 3.3752 1 169550 39122 5308 24760 24771 44431 44431 0.153431856450311 RTLTKVLAL 9 Unmodified _RTLTKVLAL_ 0 0 0 ENSG00000196455.8,PIK3R4,chr3,-,I11.1,130708493,130716395|28|6.58|2|intron;ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455.8,PIK3R4,chr3,-,I11.1,130708493,130716395|28|6.58|2|intron ENSG00000196455.8,PIK3R4,chr3,-,I11.1,130708493,130716395|28|6.58|2|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 507.837134 1013.65972 0.19397 9.8503E-05 -0.27384 -0.00013907 -0.079879 -4.0566E-05 507.8369868250648 45.141 0.68471 48.778 48.509 49.194 3.6371 -0.017586 -0.00011332 NaN 23.79 69 44 2 NaN NaN NaN NaN 0 NaN NaN 0 149510 39123 5308 24760 24771 0.153431856450311 RTLTTRKHM 9 Unmodified _RTLTTRKHM_ 0 0 0 L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|41|2|sense L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|41|2|sense L1M2_dup5228|chrX:41897830-41900739:-|1.574280856697554|0.0313140057830083|5.65|151.0|41|2|sense MSMS UPN48_class_I_Rep_1 5 572.3251342773438 2 572.324399 1142.63425 NaN NaN NaN NaN NaN NaN NaN 40.603 1 44.108 43.608 44.608 3.5048 0 0 0 0.40038 1 7306 7306 0.6015 0 1 39124 8698 24761 24772 44432 44432 0.06863387850967229 RTLVYPLEL 9 Unmodified _RTLVYPLEL_ 0 0 0 ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C ENST00000467747.1_1_2:97526365-97527817:-|nuORF ENST00000467747.1_1_2:97526365-97527817:-|nuORF MSMS UPN48_class_I_Rep_2 6 552.3268432617188 2 552.326599 1102.63865 NaN NaN NaN NaN NaN NaN NaN 66.207 1 69.693 69.193 70.193 3.4866 0 0 0 0.35904 1 15108 15108 7.609 0 1 39125 4387 24762 24773 44433 44433 0.09143175545523263 RTLYPLLI 8 Unmodified _RTLYPLLI_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS UPN48_class_I_Rep_1 5 494.81317138671875 2 494.813128 987.611703 0.22505 0.00011136 -0.041304 -2.0438E-05 0.18375 9.092E-05 494.81302654448825 68.274 0.95043 71.726 71.314 72.265 3.4517 202 79 3 0 0 0 0.82752 1 15729 15729 13.906 0 1 563330 39126 4147 24763 24774 44434 44434 0.11740111724986946 RTLYPLLI 8 Unmodified _RTLYPLLI_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS UPN48_class_I_Rep_3 7 494.8130798339844 2 494.813128 987.611703 0.3066 0.00015171 -0.014547 -7.198E-06 0.29205 0.00014451 494.8130138500719 67.928 0.87394 71.436 71.051 71.925 3.5077 167 80 3 0 0 0 0.82752 2 15566 15566;15603 19.257 0 1 493450 39127 4147 24763 24774 44435;44436 44435 0.11740111724986946 RTMIYLAFV 9 Unmodified _RTMIYLAFV_ 0 0 0 REV__L1MD2_dup1228|chr2:131137776-131139412:-|1.5856292657831776|0.2417083832380936|2.71|151.0|75|1|anti-sense REV__L1MD2_dup1228|chr2:131137776-131139412:-|1.5856292657831776|0.2417083832380936|2.71|151.0|75|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 557.3099365234375 2 557.309895 1112.60524 0.020261 1.1292E-05 -0.35079 -0.0001955 -0.33053 -0.00018421 557.3097191058282 23.425 0.80468 23.425 23.028 23.832 0 152 76 3 0 0 0 0.45688 1 2997 2997 4.756 0 1 97718 + 39128 27389 24764 24775 44437 44437 0.05343850501935776 RTMRLVFC 8 Unmodified _RTMRLVFC_ 0 0 0 REV__L1M5_dup16480|chr5:43048490-43048811:-|1.3698488603960326|0.2673578305883696|2.36|151.0|23|2|anti-sense REV__L1M5_dup16480|chr5:43048490-43048811:-|1.3698488603960326|0.2673578305883696|2.36|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 513.2728271484375 2 513.27279 1024.53103 NaN NaN NaN NaN NaN NaN NaN 27.766 1 31.521 31.021 32.021 3.7555 0 0 0 0.40738 1 3686 3686 0.79363 0 1 + 39129 24622 24765 24776 44438 44438 0.019741841388167813 RTNVKETI 8 Unmodified _RTNVKETI_ 0 0 0 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 MULTI-MSMS UPN47_class_I_Rep_2 3 480.776611328125 2 480.777274 959.539994 -0.21521 -0.00010347 -0.49364 -0.00023733 -0.70885 -0.0003408 480.77703933511344 21.456 0.69851 24.88 24.61 25.308 3.4241 110 76 2 0 0 0 0.82752 1 2436 2436 3.5965 0 1 59495 39130 5037 24766 24777 44439 44439 0.058605723004689025 RTPGVHGSSNS 11 Unmodified _RTPGVHGSSNS_ 0 0 0 L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|58|2|anti-sense MSMS UPN46_class_I_Rep_3 1 549.7664184570312 2 549.767968 1097.52138 NaN NaN NaN NaN NaN NaN NaN 105.17 1 105.17 104.67 105.67 0 0 0 0 0.38417 1 25656 25656 2.4985 0.19575 1 39131 13799 24767 24778 44440 44440 -0.023475893413660742 RTPSGNLVNR 10 Unmodified _RTPSGNLVNR_ 0 0 0 nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 nc|ENSG00000103222|P33527-8|ABCC1 MULTI-MSMS UPN46_class_I_Rep_3 1 557.811279296875 2 557.309803 1112.60505 0.020261 1.1292E-05 -0.18668 -0.00010404 -0.16642 -9.2745E-05 557.3097191058282 23.425 0.80468 23.425 23.028 23.832 0 152 76 3 0 0 0 0.52389 2 2891 2891;2930 8.9762 2.3459 1 97718 39132 1649 24768 24779 44441;44442 44441 0.05325566826309114 RTPYTLDAY 9 Unmodified _RTPYTLDAY_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MSMS UPN48_class_I_Rep_3 7 550.273193359375 2 550.274564 1098.53457 NaN NaN NaN NaN NaN NaN NaN 84.039 1 87.767 87.267 88.267 3.7281 0 0 0 0.26661 1 19938 19938 12.532 0.89125 1 + 39133 21278 24769 24780 44443 44443 -0.010751512820206699 RTQNVVPW 8 Unmodified _RTQNVVPW_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000013050 REV__CON__ENSEMBL:ENSBTAP00000013050 MSMS UPN48_class_I_Rep_3 7 500.2720031738281 2 500.272158 998.529764 NaN NaN NaN NaN NaN NaN NaN 20.721 1 24.388 23.888 24.888 3.6667 0 0 0 0.40738 1 1820 1820 0.79363 0 1 + + 39134 17467 24770 24781 44444 44444 0.03044009365896727 RTQRHHIR 8 Unmodified _RTQRHHIR_ 0 0 0 REV__ENSG00000198018|ENST00000370489|ENTPD7 REV__ENSG00000198018|ENST00000370489|ENTPD7 MULTI-MSMS UPN47_class_I_Rep_2 3 552.3203735351562 2 552.318297 1102.62204 0.040216 2.2212E-05 -0.11775 -6.5035E-05 -0.077533 -4.2823E-05 552.3202704007392 13.666 0.084723 17.054 17 17.084 3.388 11 9 2 0 0 0 0.82752 1 385 385 0 0 1 15033 + 39135 21106 24771 24782 44445 44445 0.07483532222772737 RTRAALAAT 9 Unmodified _RTRAALAAT_ 0 0 0 REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF MSMS UPN46_class_I_Rep_3 1 465.77685546875 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 76.951 1 76.951 76.451 77.451 0 0 0 0 0.4029 1 17968 17968 0 0 1 + 39136 22227 24772 24783 44446 44446 0.07307411740146108 RTRAALAAT 9 Unmodified _RTRAALAAT_ 0 0 0 REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF MSMS UPN46_class_I_Rep_3 1 465.77734375 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 77.11 1 77.11 76.61 77.61 0 0 0 0 0.4029 1 18014 18014 0 0 1 + 39137 22227 24772 24783 44447 44447 0.07307411740146108 RTRAALAAT 9 Unmodified _RTRAALAAT_ 0 0 0 REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 465.7776184082031 2 465.777608 929.540663 0.24572 0.00011445 -0.04082 -1.9013E-05 0.2049 9.5437E-05 465.7775246939627 73.629 0.11895 77.18 77.128 77.247 3.5505 24 14 2 0 0 0 0.50582 1 17249 17249 0 0 1 67279 + 39138 22227 24772 24783 44448 44448 0.07307411740146108 RTRAALAAT 9 Unmodified _RTRAALAAT_ 0 0 0 REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF REV__ENST00000417689.5_1_16:66968418-66968478:+|nuORF MSMS UPN48_class_I_Rep_3 7 465.7772216796875 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 87.458 1 91.249 90.749 91.749 3.7905 0 0 0 0.4029 1 20752 20752 0 0 1 + 39139 22227 24772 24783 44449 44449 0.07307411740146108 RTRAPPVT 8 Unmodified _RTRAPPVT_ 0 0 0 ENST00000592895.5_1_19:1985925-1986177:-|nuORF ENST00000592895.5_1_19:1985925-1986177:-|nuORF ENST00000592895.5_1_19:1985925-1986177:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 449.26666259765625 2 449.266876 896.519199 0.18017 8.0946E-05 -0.24373 -0.0001095 -0.063561 -2.8556E-05 449.2667498134035 84.609 0.51369 84.609 84.377 84.89 0 104 44 3 0 0 0 0.82752 1 20185 20185 4.3292 0 1 435140 39140 7638 24773 24784 44450 44450 0.06680026711467235 RTRAPPVT 8 Unmodified _RTRAPPVT_ 0 0 0 ENST00000592895.5_1_19:1985925-1986177:-|nuORF ENST00000592895.5_1_19:1985925-1986177:-|nuORF ENST00000592895.5_1_19:1985925-1986177:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 449.266845703125 2 449.266876 896.519199 0.14449 6.4916E-05 -0.3134 -0.0001408 -0.16891 -7.5885E-05 449.26662690137067 81.133 0.77029 84.79 84.426 85.196 3.6567 160 99 3 0 0 0 0.82752 1 19243 19243 4.3292 0 1 272390 39141 7638 24773 24784 44451 44451 0.06680026711467235 RTRECACN 8 Unmodified _RTRECACN_ 0 0 0 REV__MER1B_dup554|chr2:74085529-74085794:-|1.4185502595303172|0.0190695741594577|6.22|151.0|4|2|sense REV__MER1B_dup554|chr2:74085529-74085794:-|1.4185502595303172|0.0190695741594577|6.22|151.0|4|2|sense MSMS UPN48_class_I_Rep_1 5 476.70782470703125 2 476.708011 951.401469 NaN NaN NaN NaN NaN NaN NaN 34.752 1 38.267 37.767 38.767 3.5144 0 0 0 0.40625 1 5600 5600 2.3027 0 1 + 39142 31138 24774 24785 44452 44452 -0.07617617211167271 RTREYFYYV 9 Unmodified _RTREYFYYV_ 0 0 0 ENSG00000213563|ENST00000524821|C8orf82 ENSG00000213563|ENST00000524821|C8orf82 ENSG00000213563|ENST00000524821|C8orf82 MSMS UPN48_class_I_Rep_2 6 432.8849792480469 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 101.22 1 104.96 104.46 105.46 3.7417 0 0 0 0.40098 1 24024 24024 0.20686 0 1 39143 5594 24775 24786 44453 44453 -0.006117980909493781 RTREYFYYV 9 Unmodified _RTREYFYYV_ 0 0 0 ENSG00000213563|ENST00000524821|C8orf82 ENSG00000213563|ENST00000524821|C8orf82 ENSG00000213563|ENST00000524821|C8orf82 MSMS UPN48_class_I_Rep_3 7 432.8848876953125 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 101.51 1 105.33 104.83 105.83 3.8153 0 0 0 0.40098 1 24005 24005 0.20686 0 1 39144 5594 24775 24786 44454 44454 -0.006117980909493781 RTRGSPLR 8 Unmodified _RTRGSPLR_ 0 0 0 ENST00000538682.5_1_11:62649445-62650469:+|nuORF ENST00000538682.5_1_11:62649445-62650469:+|nuORF ENST00000538682.5_1_11:62649445-62650469:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.79583740234375 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 25.921 1 29.416 28.916 29.916 3.4945 0 0 0 0.40753 1 3674 3674 0.6015 0 1 39145 7341 24776 24787 44455 44455 0.07878233834310322 RTRGSRTAI 9 Unmodified _RTRGSRTAI_ 0 0 0 ENST00000531579.5_1_11:62568856-62572845:-|nuORF ENST00000531579.5_1_11:62568856-62572845:-|nuORF ENST00000531579.5_1_11:62568856-62572845:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 509.3306579589844 2 509.299239 1016.58392 0.22379 0.00011398 -1.2801 -0.00065195 -1.0563 -0.00053797 509.29772625454035 108.37 0.058754 112 111.98 112.04 3.6313 7 3 3 0 0 0 0.12551 1 26211 26211 0 0 1 275730 39146 7297 24777 24788 44456 44456 0.07629601517442097 RTRIALAR 8 Unmodified _RTRIALAR_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|56|2|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|56|2|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|56|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 478.2469787597656 2 478.809242 955.603932 -0.23603 -0.00011301 -1.012 -0.00048453 -1.248 -0.00059755 478.80883796802607 12.723 0.091612 16.111 16.081 16.173 3.388 13 9 2 0 0 0 0.72333 1 146 146 0 0 1 18065 39147 9339 24778 24789 44457 44457 0.12435397248054869 RTRKHYKPTLK 11 Unmodified _RTRKHYKPTLK_ 0 0 0 REV__L1PA6_dup909|chr2:230802110-230805410:+|6.264124108406335|0.3993403863935853|3.97|151.0|64|3|sense REV__L1PA6_dup909|chr2:230802110-230805410:+|6.264124108406335|0.3993403863935853|3.97|151.0|64|3|sense MSMS UPN48_class_I_Rep_3 7 476.6236877441406 3 476.624643 1426.8521 NaN NaN NaN NaN NaN NaN NaN 104.25 1 107.97 107.47 108.47 3.7192 0 0 0 0.38417 1 24608 24608 4.1166 1.4854 1 + 39148 29958 24779 24790 44458 44458 0.15574901045056322 RTRPCQKKK 9 Unmodified _RTRPCQKKK_ 0 0 0 AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense AluJb_dup50795|chr7:101837547-101837858:+|1.3428430070703332|0.0248137701440474|5.76|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 572.8421630859375 2 572.840217 1143.66588 NaN NaN NaN NaN NaN NaN NaN 93.214 1 96.95 96.45 97.45 3.736 0 0 0 0.40098 1 23195 23195 0.45834 0 1 39149 51 24780 24791 44459 44459 0.09979380604886501 RTRPFLRF 8 Unmodified _RTRPFLRF_ 0 0 0 REV__ENST00000371117.7_1_6:51720856-51735327:-|nuORF REV__ENST00000371117.7_1_6:51720856-51735327:-|nuORF MSMS UPN46_class_I_Rep_3 1 546.8242797851562 2 546.824892 1091.63523 NaN NaN NaN NaN NaN NaN NaN 21.028 1 21.028 20.528 21.528 0 0 0 0 0.40746 1 2283 2283 0.69038 0 1 + 39150 21958 24781 24792 44460 44460 0.09307970282179667 RTRQRAQW 8 Unmodified _RTRQRAQW_ 0 0 0 REV__ENST00000561175.1_1_10:135085308-135086059:-|nuORF REV__ENST00000561175.1_1_10:135085308-135086059:-|nuORF MSMS UPN48_class_I_Rep_2 6 551.305908203125 2 551.304855 1100.59516 NaN NaN NaN NaN NaN NaN NaN 32.974 1 36.624 36.124 37.124 3.6497 0 0 0 0.40625 1 5155 5155 2.3027 0 1 + 39151 19662 24782 24793 44461 44461 0.04888423611578219 RTRRLYPA 8 Unmodified _RTRRLYPA_ 0 0 0 L1PA3_dup225|chr1:84228931-84234940:-|3.222435310730038|0.4644621555680597|2.79|151.0|109|3|sense;L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|5|1|sense;L1PA3_dup1687|chr3:33671455-33677714:+|2.6229792291023344|0.3076045160087201|3.09|151.0|51|2|sense;L1PA3_dup7963|chr11:35702779-35708923:+|1.2854097255365469|0.2499459348530521|2.36|151.0|77|2|sense;L1PA3_dup3502|chr5:77474803-77480837:+|1.6323608543543515|0.1679596727996231|3.28|151.0|3|1|sense;L1PA3_dup2519|chr4:48711075-48717284:+|1.45913825802375|0.0640093048325981|4.51|151.0|3|1|sense;L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|64|2|sense;L1PA3_dup4709|chr7:37163343-37169491:-|11.219360921703444|0.1922281966360752|5.87|151.0|115|3|sense;L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|122|3|sense;L1PA3_dup3964|chr6:4831173-4836230:-|2.680445875075561|0.0548274713041951|5.61|151.0|3|1|sense;L1PA3_dup3846|chr5:150742838-150748950:+|6.15701709038747|0.3295787964843827|4.22|151.0|70|2|sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|47|2|sense;L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|190|3|sense;L1PA2_dup187|chr1:158952741-158958797:+|2.9481994155969926|0.0787318393075506|5.23|151.0|20|2|sense;L1PA3_dup7472|chr10:32558678-32564814:+|1.0084737206068737|0.1655495086793867|2.61|151.0|4|1|sense;L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|133|3|sense;L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|2|1|sense;L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense;L1PA3_dup6317|chrX:46655358-46661385:+|2.828186986300199|0.2030807710624546|3.8|151.0|3|1|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|112|3|sense;L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|3|1|sense;L1PA3_dup4122|chr6:57334869-57340871:+|1.2884723371868338|0.0519221903419051|4.63|151.0|2|1|sense L1PA3_dup225|chr1:84228931-84234940:-|3.222435310730038|0.4644621555680597|2.79|151.0|109|3|sense;L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|2|1|sense;L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense MSMS UPN47_class_I_Rep_2 3 516.8062133789062 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 78.935 1 82.291 81.791 82.791 3.3554 0 0 0 0.40738 1 19626 19626 0.79363 0 1 39152 14284;14236;14240 24783 24794 44462 44462 0.08431093385456734 RTRSKKKPQY 10 Unmodified _RTRSKKKPQY_ 0 0 0 REV__L1PA6_dup966|chr3:17612892-17619039:-|9.794702190376476|0.1613599755219834|5.92|151.0|36|1|sense REV__L1PA6_dup966|chr3:17612892-17619039:-|9.794702190376476|0.1613599755219834|5.92|151.0|36|1|sense MSMS UPN48_class_I_Rep_3 7 646.8470458984375 2 646.383303 1290.75205 NaN NaN NaN NaN NaN NaN NaN 72.76 1 76.297 75.797 76.797 3.5373 0 0 0 0.53105 1 16981 16981 1.4819 0 1 + 39153 29864 24784 24795 44463 44463 0.11830663711270972 RTRTRLPFVK 10 Unmodified _RTRTRLPFVK_ 0 0 0 REV__L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|118|2|sense REV__L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|118|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 637.395263671875 2 637.396213 1272.77787 0.57108 0.00036401 -0.79333 -0.00050567 -0.22225 -0.00014166 637.3952853759018 107.86 0.092911 111.53 111.49 111.58 3.6724 12 4 3 0 0 0 0.55068 1 26458 26458 5.7319 0.43497 1 4228000 + 39154 30519 24785 24796 44464 44464 0.15239557953509575 RTRTVLEV 8 Unmodified _RTRTVLEV_ 0 0 0 REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 487.2933044433594 2 487.293091 972.571629 0.28557 0.00013916 -0.11994 -5.8447E-05 0.16563 8.071E-05 487.29292222696057 85.425 0.17174 85.425 85.281 85.452 0 26 15 2 0 0 0 0.82752 1 20378 20378 2.0598 0 1 408510 + 39155 20464 24786 24797 44465 44465 0.08424565054417599 RTRTVLEV 8 Unmodified _RTRTVLEV_ 0 0 0 REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 487.2930908203125 2 487.293091 972.571629 0.28643 0.00013957 -0.22878 -0.00011148 0.05765 2.8092E-05 487.2929391067089 85.563 0.08287 85.563 85.531 85.614 0 22 9 3 0 0 0 0.82752 1 20417 20417 2.0598 0 1 173110 + 39156 20464 24786 24797 44466 44466 0.08424565054417599 RTRWHRPVIQH 11 Unmodified _RTRWHRPVIQH_ 0 0 0 AluSz_dup86147|chr17:30752474-30752757:-|1.2929375617594137|0.0194637456342124|6.05|151.0|1|1|sense AluSz_dup86147|chr17:30752474-30752757:-|1.2929375617594137|0.0194637456342124|6.05|151.0|1|1|sense AluSz_dup86147|chr17:30752474-30752757:-|1.2929375617594137|0.0194637456342124|6.05|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 496.2656555175781 3 495.948121 1484.82253 NaN NaN NaN NaN NaN NaN NaN 31.109 1 34.824 34.324 35.324 3.7146 0 0 0 0.38417 1 4562 4562 0.45452 0 1 39157 367 24787 24798 44467 44467 0.09951381819587368 RTSLRIIAY 9 Unmodified _RTSLRIIAY_ 0 0 0 REV__MER61-int_dup946|chr13:48067799-48071465:+|3.5426943458411784|0.3143860005580106|3.49|151.0|31|1|sense REV__MER61-int_dup946|chr13:48067799-48071465:+|3.5426943458411784|0.3143860005580106|3.49|151.0|31|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.828125 2 546.82984 1091.64513 0.44115 0.00024123 -0.44698 -0.00024442 -0.0058302 -3.1881E-06 546.8294776343552 45.996 0.67265 49.512 49.185 49.857 3.5162 59 46 2 0 0 0 0.42249 2 8928 8928;8985 6.7232 0 1 149090 + 39158 31511 24788 24799 44468;44469 44468 0.10297113496881138 RTSPFFSVY 9 Unmodified _RTSPFFSVY_ 0 0 0 ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1 ENST00000526194.5_1_1:21560049-21616919:-|nuORF ENST00000526194.5_1_1:21560049-21616919:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 552.2791748046875 2 552.279649 1102.54475 0.63006 0.00034797 -0.40723 -0.0002249 0.22283 0.00012307 552.27957472635 58.914 0.79 62.4 62.004 62.794 3.487 87 49 2 0 0 0 0.11355 3 12893 12893;12910;12925 31.268 13.133 1 226900 39159 2214 24789 24800 44470;44471;44472 44470 -0.0024254355676021078 RTSPFFSVY 9 Unmodified _RTSPFFSVY_ 0 0 0 ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1 ENST00000526194.5_1_1:21560049-21616919:-|nuORF ENST00000526194.5_1_1:21560049-21616919:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 552.2814331054688 2 552.279649 1102.54475 0.57922 0.00031989 -0.28713 -0.00015858 0.29209 0.00016131 552.2796858287854 58.84 0.74583 62.339 62.02 62.766 3.4987 82 45 2 0 0 0 0.19147 3 12825 12825;12839;12890 21.537 5.6898 1 217710 39160 2214 24789 24800 44473;44474;44475 44473 -0.0024254355676021078 RTSPFFSVY 9 Unmodified _RTSPFFSVY_ 0 0 0 ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1 ENST00000526194.5_1_1:21560049-21616919:-|nuORF ENST00000526194.5_1_1:21560049-21616919:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 552.2803955078125 2 552.279649 1102.54475 0.34367 0.0001898 -0.15691 -8.6659E-05 0.18676 0.00010314 552.2797034967389 58.741 0.76004 62.264 61.889 62.649 3.5231 90 50 2 0 0 0 0.16559 5 12745 12694;12719;12745;12789;12838 24.021 5.6898 1 225800 39161 2214 24789 24800 44476;44477;44478;44479;44480 44478 -0.0024254355676021078 RTSWHKFLLL 10 Unmodified _RTSWHKFLLL_ 0 0 0 L1PA15_dup713|chr2:57979402-57981730:-|1.3483755825166386|0.0240126543241204|5.81|151.0|136|3|anti-sense L1PA15_dup713|chr2:57979402-57981730:-|1.3483755825166386|0.0240126543241204|5.81|151.0|136|3|anti-sense L1PA15_dup713|chr2:57979402-57981730:-|1.3483755825166386|0.0240126543241204|5.81|151.0|136|3|anti-sense MSMS UPN47_class_I_Rep_1 2 434.25726318359375 3 434.255669 1299.74518 NaN NaN NaN NaN NaN NaN NaN 105.01 1 108.75 108.25 109.25 3.7395 0 0 0 0.53105 1 25783 25783 1.7423 0 1 39162 13973 24790 24801 44481 44481 0.10729350830706608 RTSWHKFLLL 10 Unmodified _RTSWHKFLLL_ 0 0 0 L1PA15_dup713|chr2:57979402-57981730:-|1.3483755825166386|0.0240126543241204|5.81|151.0|136|3|anti-sense L1PA15_dup713|chr2:57979402-57981730:-|1.3483755825166386|0.0240126543241204|5.81|151.0|136|3|anti-sense L1PA15_dup713|chr2:57979402-57981730:-|1.3483755825166386|0.0240126543241204|5.81|151.0|136|3|anti-sense MSMS UPN48_class_I_Rep_1 5 434.2571105957031 3 434.255669 1299.74518 NaN NaN NaN NaN NaN NaN NaN 105.01 1 108.64 108.14 109.14 3.6247 0 0 0 0.53105 1 25302 25302 1.7423 0 1 39163 13973 24790 24801 44482 44482 0.10729350830706608 RTTALQPGNR 10 Unmodified _RTTALQPGNR_ 0 0 0 AluSc_dup28661|chr16:31359167-31359462:-|1.1140337534485276|0.3511792001241062|1.67|151.0|9|3|sense;AluSc_dup61|chr1:6060620-6060922:+|1.0215822009733126|0.0116988506944898|6.45|151.0|3|1|sense AluSc_dup28661|chr16:31359167-31359462:-|1.1140337534485276|0.3511792001241062|1.67|151.0|9|3|sense AluSc_dup28661|chr16:31359167-31359462:-|1.1140337534485276|0.3511792001241062|1.67|151.0|9|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 557.3095703125 2 557.309803 1112.60505 0.020261 1.1292E-05 -0.18668 -0.00010404 -0.16642 -9.2745E-05 557.3097191058282 23.425 0.80468 23.425 23.028 23.832 0 152 76 3 0 0 0 0.54148 1 2964 2964 6.6304 0 1 97718 39164 203 24791 24802 44483 44483 0.05325566826309114 RTTKKLKLI 9 Unmodified _RTTKKLKLI_ 0 0 0 ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 550.8792724609375 2 550.879333 1099.74411 0.40306 0.00022204 0.75537 0.00041612 1.1584 0.00063816 550.8794593846496 108.66 0.30484 108.66 108.47 108.77 0 75 34 3 0 0 0 0.48846 1 26571 26571 1.8442 0 1 8621600 39165 7569 24792 24803 44484 44484 0.19823136461786817 RTTKKTNKKY 10 Unmodified _RTTKKTNKKY_ 0 0 0 L1MB7_dup11458|chr9:137642490-137642901:-|1.258435925224744|0.0057806521844296|7.77|151.0|11|2|sense L1MB7_dup11458|chr9:137642490-137642901:-|1.258435925224744|0.0057806521844296|7.77|151.0|11|2|sense L1MB7_dup11458|chr9:137642490-137642901:-|1.258435925224744|0.0057806521844296|7.77|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3788452148438 2 634.377686 1266.74082 0.63451 0.00040252 0.2794 0.00017725 0.91391 0.00057976 634.3783907240943 104.15 0.42486 107.67 107.61 108.04 3.5289 116 68 2 0 0 0 0.54822 2 25295 25295;25354 5.7319 0 1 57862000 39166 10684 24793 24804 44485;44486 44485 0.11811841617145546 RTTNFAIVH 9 Unmodified _RTTNFAIVH_ 0 0 0 REV__MLT1D_dup13699|chr11:66610140-66610650:-|1.351841837087684|0.4426537129493796|1.61|151.0|24|2|anti-sense REV__MLT1D_dup13699|chr11:66610140-66610650:-|1.351841837087684|0.4426537129493796|1.61|151.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 529.790771484375 2 529.790715 1057.56688 0.38081 0.00020175 -1.8169 -0.00096258 -1.4361 -0.00076083 529.7897903910454 27.024 0.17022 30.78 30.671 30.841 3.7555 28 20 2 0 0 0 0.36392 1 3495 3495 10.074 3.3508 1 60989 + 39167 31666 24794 24805 44487 44487 0.04039680911660071 RTTPRYII 8 Unmodified _RTTPRYII_ 0 0 0 L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|121|3|sense;L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|89|2|sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|121|3|sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|121|3|sense MSMS UPN46_class_I_Rep_3 1 510.3042297363281 2 510.303458 1018.59236 NaN NaN NaN NaN NaN NaN NaN 108.88 1 108.88 108.38 109.38 0 0 0 0 0.388 1 26668 26668 12.532 1.7076 1 39168 14722 24795 24806 44488 44488 0.08381155434085485 RTTRKVSVW 9 Unmodified _RTTRKVSVW_ 0 0 0 ENSG00000112309|ENST00000230053|B3GAT2 ENSG00000112309|ENST00000230053|B3GAT2 ENSG00000112309|ENST00000230053|B3GAT2 MSMS UPN48_class_I_Rep_2 6 566.835693359375 2 566.832914 1131.65128 NaN NaN NaN NaN NaN NaN NaN 62.822 1 66.296 65.796 66.796 3.4738 0 0 0 0.3824 1 14073 14073 4.897 0.141 1 39169 2010 24796 24807 44489 44489 0.09071631728443208 RTTRTWRL 8 Unmodified _RTTRTWRL_ 0 0 0 L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|43|2|sense L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|43|2|sense L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|43|2|sense MSMS UPN47_class_I_Rep_2 3 545.3168334960938 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 83.983 1 87.394 86.894 87.894 3.4116 0 0 0 0.40753 1 20944 20944 0.6015 0 1 39170 12595 24797 24808 44490 44490 0.07954478414171717 RTTTSGVPR 9 Unmodified _RTTTSGVPR_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS UPN46_class_I_Rep_3 1 487.7723693847656 2 487.772522 973.530492 -0.27809 -0.00013564 -0.090803 -4.4291E-05 -0.36889 -0.00017994 487.77246455873075 16.183 1.6642 16.183 15.587 17.251 0 384 197 3 0 0 0 0.1249 2 1087 1087;1241 29.082 1.4324 1 297570 39171 4624 24798 24809 44491;44492 44491 0.042668040149465014 RTVAVAIAI 9 Unmodified _RTVAVAIAI_ 0 0 0 REV__L1M2_dup7766|chr14:67932209-67933835:-|1.3914788698817877|0.0199528839263427|6.12|151.0|35|3|sense REV__L1M2_dup7766|chr14:67932209-67933835:-|1.3914788698817877|0.0199528839263427|6.12|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.2951354980469 2 457.295102 912.575651 0.20079 9.1819E-05 -0.062197 -2.8442E-05 0.13859 6.3377E-05 457.294972898104 63.825 1.0612 67.334 66.721 67.782 3.5083 225 87 3 0 0 0 0.10568 1 14332 14332 32.786 0 1 1500600 + 39172 24235 24799 24810 44493 44493 0.11586654548113984 RTVEKELTY 9 Unmodified _RTVEKELTY_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MULTI-MSMS UPN48_class_I_Rep_1 5 569.8095703125 2 569.808771 1137.60299 0.47894 0.0002729 -0.17679 -0.00010074 0.30215 0.00017217 569.8086118699217 28.161 0.56669 31.718 31.46 32.026 3.5571 73 57 2 0 0 0 0.24411 1 3733 3733 17.443 8.6972 1 85903 39173 2473 24800 24811 44494 44494 0.03969093297860127 RTVEKELTY 9 Unmodified _RTVEKELTY_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MULTI-MSMS UPN48_class_I_Rep_2 6 569.8082275390625 2 569.808771 1137.60299 0.50955 0.00029035 -0.71381 -0.00040673 -0.20425 -0.00011639 569.8084329704135 28.203 0.5633 31.834 31.626 32.189 3.6311 75 59 2 0 0 0 0.24411 1 3882 3882 17.443 5.9479 1 109890 39174 2473 24800 24811 44495 44495 0.03969093297860127 RTVEKELTY 9 Unmodified _RTVEKELTY_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MSMS UPN48_class_I_Rep_3 7 569.8082885742188 2 569.808771 1137.60299 NaN NaN NaN NaN NaN NaN NaN 27.915 1 31.671 31.171 32.171 3.7555 0 0 0 0.23173 1 3728 3728 14.405 2.9107 1 39175 2473 24800 24811 44496 44496 0.03969093297860127 RTVEKELTY 9 Unmodified _RTVEKELTY_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MSMS UPN48_class_I_Rep_3 7 569.8096923828125 2 569.808771 1137.60299 NaN NaN NaN NaN NaN NaN NaN 28.145 1 31.887 31.387 32.387 3.7424 0 0 0 0.18341 1 3791 3791 17.443 7.3687 1 39176 2473 24800 24811 44497 44497 0.03969093297860127 RTVFTTRHR 9 Unmodified _RTVFTTRHR_ 0 0 0 REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|154|1|anti-sense REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|154|1|anti-sense MSMS UPN48_class_I_Rep_3 7 587.2581787109375 2 587.333613 1172.65267 NaN NaN NaN NaN NaN NaN NaN 66.857 1 70.365 69.865 70.865 3.5077 0 0 0 0.3967 1 15218 15218 1.4819 0.15237 1 + 39177 25631 24801 24812 44498 44498 0.07325265817166837 RTVKALEF 8 Unmodified _RTVKALEF_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS UPN48_class_I_Rep_3 7 482.2841796875 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 35.534 1 39.2 38.7 39.7 3.6667 0 0 0 0.40527 1 5774 5774 3.5965 1.5367 1 39178 4619 24802 24813 44499 44499 0.07214064168454115 RTVSYPPMIL 10 Unmodified _RTVSYPPMIL_ 0 0 0 LTR8B_dup113|chr1:246081977-246082684:+|1.532880055322448|0.0143979032162538|6.73|151.0|7|1|sense LTR8B_dup113|chr1:246081977-246082684:+|1.532880055322448|0.0143979032162538|6.73|151.0|7|1|sense LTR8B_dup113|chr1:246081977-246082684:+|1.532880055322448|0.0143979032162538|6.73|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 588.8250732421875 2 588.825909 1175.63727 NaN NaN NaN NaN NaN NaN NaN 67.745 1 71.253 70.753 71.753 3.5077 0 0 0 0.53105 1 15488 15488 5.7319 0 1 39179 15725 24803 24814 44500 44500 0.05647218185094971 RTVVMRNEAE 10 Unmodified _RTVVMRNEAE_ 0 0 0 REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|84|2|sense REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|84|2|sense MSMS UPN48_class_I_Rep_1 5 602.806640625 2 602.808779 1203.60301 NaN NaN NaN NaN NaN NaN NaN 48.614 1 52.137 51.637 52.637 3.5239 0 0 0 0.53105 1 9736 9736 0.35063 0 1 + 39180 25511 24804 24815 44501 44501 0.009347700262196668 RTVYLAAVF 9 Unmodified _RTVYLAAVF_ 0 0 0 REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 520.30029296875 2 520.300384 1038.58622 0.40971 0.00021317 -0.23826 -0.00012397 0.17145 8.9206E-05 520.3002117839427 63.637 1.1839 67.112 66.694 67.878 3.4743 222 92 4 0 0 0 0.090251 1 14309 14309 36.127 1.7253 1 2647000 + 39181 28032 24805 24816 44502 44502 0.06846637202556849 RTVYLAAVF 9 Unmodified _RTVYLAAVF_ 0 0 0 REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 520.300384 1038.58622 0.39424 0.00020513 -0.22307 -0.00011606 0.17118 8.9063E-05 520.3002325691351 63.868 1.474 67.326 66.754 68.228 3.4578 0.15575 1.7374E-05 NaN 36.127 311 115 4 NaN NaN NaN NaN 0 NaN NaN 0 2540100 + 39182 28032 24805 24816 0.06846637202556849 RTVYLAAVF 9 Unmodified _RTVYLAAVF_ 0 0 0 REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 520.300384 1038.58622 0.40971 0.00021317 -0.23826 -0.00012397 0.17145 8.9206E-05 520.3002117839427 63.637 1.1839 67.112 66.694 67.878 3.4743 -0.058409 1.5668E-06 NaN 36.127 222 92 4 NaN NaN NaN NaN 0 NaN NaN 0 2647000 + 39183 28032 24805 24816 0.06846637202556849 RTVYLAAVF 9 Unmodified _RTVYLAAVF_ 0 0 0 REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense REV__L1ME3A_dup7578|chr8:73847175-73847619:+|1.0495541231696246|0.0056696964095946|7.53|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 520.300384 1038.58622 0.41055 0.00021361 -0.25589 -0.00013314 0.15466 8.0468E-05 520.3002046197814 63.564 1.2653 67.073 66.517 67.783 3.5091 -0.097337 -1.6782E-05 NaN 36.127 297 103 4 NaN NaN NaN NaN 0 NaN NaN 0 2209500 + 39184 28032 24805 24816 0.06846637202556849 RTWRSEYDS 9 Unmodified _RTWRSEYDS_ 0 0 0 ENSG00000082212|ENST00000321341|ME2 ENSG00000082212|ENST00000321341|ME2 ENSG00000082212|ENST00000321341|ME2 MSMS UPN48_class_I_Rep_2 6 600.2742309570312 2 600.275626 1198.5367 NaN NaN NaN NaN NaN NaN NaN 21.268 1 24.916 24.416 25.416 3.648 0 0 0 0.39428 1 1979 1979 2.0598 0.40713 1 39185 1222 24806 24817 44503 44503 -0.054627225441890914 RTYDLYITY 9 Unmodified _RTYDLYITY_ 0 0 0 ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 604.3037109375 2 604.303321 1206.59209 0.53432 0.00032289 0.10059 6.0787E-05 0.63491 0.00038368 604.3032776676158 58.072 0.99598 61.559 61.182 62.178 3.487 165 63 4 0 0 0 0.048662 7 12622 12539;12582;12622;12666;12707;12752;12775 49.554 13.048 1 614560 39186 3378 24807 24818 44504;44505;44506;44507;44508;44509;44510 44506 -0.0029430907643472892 RTYDLYITY 9 Unmodified _RTYDLYITY_ 0 0 0 ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 604.3036499023438 2 604.303321 1206.59209 0.58313 0.00035238 -0.023049 -1.3928E-05 0.56008 0.00033846 604.3032882628657 58.201 0.89196 61.699 61.185 62.077 3.4987 153 56 3 0 0 0 0.066364 6 12604 12517;12558;12604;12643;12694;12736 41.956 11.319 1 700240 39187 3378 24807 24818 44511;44512;44513;44514;44515;44516 44513 -0.0029430907643472892 RTYDLYITY 9 Unmodified _RTYDLYITY_ 0 0 0 ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 604.3035888671875 2 604.303321 1206.59209 0.48193 0.00029123 0.23877 0.00014429 0.7207 0.00043552 604.3034048907034 57.9 0.93868 61.432 61.063 62.002 3.5317 174 64 4 0 0 0 0.066364 5 12483 12401;12441;12483;12527;12574 41.956 9.1326 1 1117700 39188 3378 24807 24818 44517;44518;44519;44520;44521 44519 -0.0029430907643472892 RTYDLYITY 9 Unmodified _RTYDLYITY_ 0 0 0 ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 604.303321 1206.59209 0.53432 0.00032289 0.10059 6.0787E-05 0.63491 0.00038368 604.3032776676158 58.072 0.99598 61.559 61.182 62.178 3.487 -0.0044654 1.3004E-05 NaN 49.554 165 63 4 NaN NaN NaN NaN 0 NaN NaN 0 614560 39189 3378 24807 24818 -0.0029430907643472892 RTYDLYITY 9 Unmodified _RTYDLYITY_ 0 0 0 ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 604.303321 1206.59209 0.58313 0.00035238 -0.023049 -1.3928E-05 0.56008 0.00033846 604.3032882628657 58.201 0.89196 61.699 61.185 62.077 3.4987 0.13596 -0.00013643 NaN 49.554 153 56 3 NaN NaN NaN NaN 0 NaN NaN 0 700240 39190 3378 24807 24818 -0.0029430907643472892 RTYDLYITY 9 Unmodified _RTYDLYITY_ 0 0 0 ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF ENST00000467275.1_1_3:112256557-112257010:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 604.303321 1206.59209 0.48193 0.00029123 0.23877 0.00014429 0.7207 0.00043552 604.3034048907034 57.9 0.93868 61.432 61.063 62.002 3.5317 -0.1315 0.00018001 NaN 49.554 174 64 4 NaN NaN NaN NaN 0 NaN NaN 0 1117700 39191 3378 24807 24818 -0.0029430907643472892 RTYFKFRISF 10 Unmodified _RTYFKFRISF_ 0 0 0 REV__L1ME4a_dup24053|chr11:128719974-128720233:-|2.744525940092762|0.0919886164635705|4.9|151.0|3|1|sense REV__L1ME4a_dup24053|chr11:128719974-128720233:-|2.744525940092762|0.0919886164635705|4.9|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 455.3123474121094 3 455.587307 1363.74009 -0.41684 -0.00018991 1.1887 0.00054155 0.77184 0.00035164 455.5878615735717 18.419 0.12473 21.999 21.899 22.024 3.5806 20 14 2 0 0 0 0.84575 1 1525 1525 0.15932 0 1 23878 + 39192 28221 24808 24819 44522 44522 0.07277046968079048 RTYKIIFR 8 Unmodified _RTYKIIFR_ 0 0 0 MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|18|1|anti-sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|18|1|anti-sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|18|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.835693359375 2 548.834926 1095.6553 0.39496 0.00021677 0.41214 0.0002262 0.8071 0.00044297 548.8350664407325 110.43 0.062202 110.43 110.4 110.47 0 8 5 2 0 0 0 0.82752 1 27206 27206 0.69038 0 1 127400 39193 16127 24809 24820 44523 44523 0.11129721222141598 RTYKIIFR 8 Unmodified _RTYKIIFR_ 0 0 0 MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|18|1|anti-sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|18|1|anti-sense MER57C1_dup99|chr9:66311008-66311386:-|1.2793226072083006|0.0837789226315594|3.93|145.0|18|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 548.834926 1095.6553 0.39496 0.00021677 0.41214 0.0002262 0.8071 0.00044297 548.8350664407325 110.43 0.062202 110.43 110.4 110.47 0 0 0 NaN 0.69038 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 127400 39194 16127 24809 24820 0.11129721222141598 RTYSLGSAL 9 Unmodified _RTYSLGSAL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_1 5 484.2639465332031 2 484.263999 966.513445 0.13936 6.7487E-05 -0.013801 -6.6834E-06 0.12556 6.0804E-05 484.26390292388703 44.065 1.174 47.578 47.192 48.366 3.5132 223 89 4 0 0 0 0.0070648 6 8297 8258;8297;8337;8374;8411;8450 87.258 41.559 1 1777600 39195 824 24810 24821 44524;44525;44526;44527;44528;44529 44525 0.028848834091604658 RTYSLGSAL 9 Unmodified _RTYSLGSAL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN48_class_I_Rep_1 5 484.2641906738281 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 44.943 1 48.457 47.957 48.957 3.5132 0 0 0 0.25702 1 8614 8614 13.042 0 1 39196 824 24810 24821 44530 44530 0.028848834091604658 RTYSLGSAL 9 Unmodified _RTYSLGSAL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_2 6 484.2640075683594 2 484.263999 966.513445 0.171 8.2809E-05 -0.063544 -3.0772E-05 0.10746 5.2037E-05 484.26388891332664 43.693 1.2798 47.454 47.052 48.332 3.7617 245 96 4 0 0 0 0.0070648 4 8274 8194;8232;8274;8313 87.258 47.019 1 1679100 39197 824 24810 24821 44531;44532;44533;44534 44533 0.028848834091604658 RTYSLGSAL 9 Unmodified _RTYSLGSAL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_3 7 484.2639465332031 2 484.263999 966.513445 0.14754 7.1449E-05 -0.059767 -2.8943E-05 0.087774 4.2506E-05 484.26387826529435 43.895 1.1404 47.534 47.123 48.264 3.6385 211 76 4 0 0 0 0.0055684 4 8235 8193;8235;8276;8319 78.06 38.111 1 1374400 39198 824 24810 24821 44535;44536;44537;44538 44536 0.028848834091604658 RTYTGLQTL 9 Unmodified _RTYTGLQTL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS UPN48_class_I_Rep_1 5 526.7902221679688 2 526.790381 1051.56621 0.31768 0.00016735 -0.34421 -0.00018133 -0.026527 -1.3974E-05 526.790040939305 42.24 0.72387 45.748 45.461 46.185 3.5079 140 69 3 0 0 0 0.079935 1 7790 7790 38.615 7.9782 1 365700 39199 4052 24811 24822 44539 44539 0.04248841471940068 RTYTGLQTL 9 Unmodified _RTYTGLQTL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.790381 1051.56621 0.33864 0.00017839 -0.34087 -0.00017957 -0.0022344 -1.1771E-06 526.790128898562 41.928 0.75447 45.686 45.316 46.071 3.7579 -0.025171 -1.3566E-05 NaN 38.615 143 78 2 NaN NaN NaN NaN 0 NaN NaN 0 322930 39200 4052 24811 24822 0.04248841471940068 RTYTGLQTL 9 Unmodified _RTYTGLQTL_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.790381 1051.56621 0.37328 0.00019664 -0.30143 -0.00015879 0.071852 3.7851E-05 526.7901107260386 42.057 0.72328 45.699 45.415 46.138 3.6417 -0.01184 2.7993E-05 NaN 38.615 164 68 3 NaN NaN NaN NaN 0 NaN NaN 0 290840 39201 4052 24811 24822 0.04248841471940068 RVAAAARQ 8 Unmodified _RVAAAARQ_ 0 0 0 ENST00000282388.3_2_2:43451527-43452328:-|nuORF ENST00000282388.3_2_2:43451527-43452328:-|nuORF ENST00000282388.3_2_2:43451527-43452328:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 421.75103759765625 2 421.751393 841.488233 -0.091422 -3.8557E-05 -0.23151 -9.7641E-05 -0.32294 -0.0001362 421.751170912148 79.608 0.5784 83.156 82.788 83.367 3.5487 100 65 2 0 0 0 0.82752 1 19043 19043 0.69038 0 1 148620 39202 6032 24812 24823 44540 44540 0.06114873397223164 RVADVIAQV 9 Unmodified _RVADVIAQV_ 0 0 0 nc|ENSG00000142185|O94759-3|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2 nc|ENSG00000142185|O94759-3|TRPM2 nc|ENSG00000142185|O94759-3|TRPM2 MULTI-MSMS UPN47_class_I_Rep_1 2 485.78729248046875 2 485.787641 969.56073 -0.12862 -6.2484E-05 -1.0675 -0.00051857 -1.1961 -0.00058105 485.787543439886 45.655 1.0328 49.355 48.853 49.886 3.6999 154 59 4 0 0 0 0.35123 2 9538 9538;9681 10.8 0 1 581390 39203 3240 24813 24824 44541;44542 44541 0.07473162680128098 RVADVIAQV 9 Unmodified _RVADVIAQV_ 0 0 0 nc|ENSG00000142185|O94759-3|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2 nc|ENSG00000142185|O94759-3|TRPM2 nc|ENSG00000142185|O94759-3|TRPM2 MULTI-MSMS UPN47_class_I_Rep_3 4 485.787109375 2 485.787641 969.56073 -0.012146 -5.9005E-06 -1.1262 -0.00054711 -1.1384 -0.00055301 485.78751023054286 46.118 1.3655 49.362 48.963 50.328 3.2441 178 84 3 0 0 0 0.279 2 9926 9926;9975 15.248 0 1 398310 39204 3240 24813 24824 44543;44544 44543 0.07473162680128098 RVAEKLLKVMV 11 Unmodified _RVAEKLLKVMV_ 0 0 0 REV__L1ME3_dup8332|chr19:6049887-6051869:+|1.0063922232092073|0.0333453312549413|4.92|151.0|36|2|sense REV__L1ME3_dup8332|chr19:6049887-6051869:+|1.0063922232092073|0.0333453312549413|4.92|151.0|36|2|sense MSMS UPN48_class_I_Rep_3 7 643.4060668945312 2 643.404858 1284.79516 NaN NaN NaN NaN NaN NaN NaN 97.908 1 101.81 101.31 102.31 3.9022 0 0 0 0.38417 1 23196 23196 1.1933 0 1 + 39205 27971 24814 24825 44545 44545 0.16415717444328948 RVAGRAAAA 9 Unmodified _RVAGRAAAA_ 0 0 0 REV__nc|ENSG00000186010|Q9P0J0-2|NDUFA13 REV__nc|ENSG00000186010|Q9P0J0-2|NDUFA13 MULTI-MSMS UPN46_class_I_Rep_3 1 421.751220703125 2 421.751393 841.488233 0.097838 4.1263E-05 -0.049554 -2.0899E-05 0.048284 2.0364E-05 421.7512790703048 84.216 0.65636 84.216 83.897 84.553 0 149 65 4 0 0 0 0.50582 1 20107 20107 0 0 1 2429200 + 39206 23151 24815 24826 44546 44546 0.06114873397211795 RVAGRAAAA 9 Unmodified _RVAGRAAAA_ 0 0 0 REV__nc|ENSG00000186010|Q9P0J0-2|NDUFA13 REV__nc|ENSG00000186010|Q9P0J0-2|NDUFA13 MSMS UPN48_class_I_Rep_2 6 421.7510986328125 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 68.457 1 71.965 71.465 72.465 3.5083 0 0 0 0.4029 1 15789 15789 0 0 1 + 39207 23151 24815 24826 44547 44547 0.06114873397211795 RVAGVVGRG 9 Unmodified _RVAGVVGRG_ 0 0 0 REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.76690673828125 2 435.767043 869.519533 -0.024577 -1.071E-05 0.023149 1.0088E-05 -0.0014273 -6.2198E-07 435.7669555585428 78.887 0.87217 82.422 81.991 82.863 3.5352 211 108 3 0 0 0 0.46869 1 18810 18810 3.9444 0 1 398400 + 39208 21644 24816 24827 44548 44548 0.07955446431333257 RVAKSLTT 8 Unmodified _RVAKSLTT_ 0 0 0 REV__L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|142|3|anti-sense REV__L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|142|3|anti-sense MSMS UPN48_class_I_Rep_1 5 438.2686767578125 2 438.269084 874.523616 NaN NaN NaN NaN NaN NaN NaN 105.21 1 108.84 108.34 109.34 3.6247 0 0 0 0.4044 1 25347 25347 4.756 0 1 + 39209 28831 24817 24828 44549 44549 0.08133491134356063 RVALRCRPLVP 11 Unmodified _RVALRCRPLVP_ 0 0 0 ENSG00000226650|ENST00000435029|KIF4B;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A ENSG00000226650|ENST00000435029|KIF4B ENSG00000226650|ENST00000435029|KIF4B MSMS UPN48_class_I_Rep_1 5 640.3934326171875 2 640.392616 1278.77068 NaN NaN NaN NaN NaN NaN NaN 52.034 1 55.557 55.057 56.057 3.5227 0 0 0 0.38417 1 10789 10789 2.7352 0.23671 1 39210 5666 24818 24829 44550 44550 0.14244502081464816 RVALRCRPLVP 11 Unmodified _RVALRCRPLVP_ 0 0 0 ENSG00000226650|ENST00000435029|KIF4B;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A ENSG00000226650|ENST00000435029|KIF4B ENSG00000226650|ENST00000435029|KIF4B MULTI-MSMS UPN48_class_I_Rep_3 7 640.3934326171875 2 640.392616 1278.77068 0.50096 0.00032081 0.54304 0.00034776 1.044 0.00066857 640.3929950581638 52.419 0.052032 56.017 55.972 56.024 3.5979 7 4 3 0 0 0 0.67264 1 10825 10825 1.1933 0.79263 1 264080 39211 5666 24818 24829 44551 44551 0.14244502081464816 RVALRCRPLVP 11 Unmodified _RVALRCRPLVP_ 0 0 0 ENSG00000226650|ENST00000435029|KIF4B;nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A ENSG00000226650|ENST00000435029|KIF4B ENSG00000226650|ENST00000435029|KIF4B MSMS UPN48_class_I_Rep_3 7 640.3931274414062 2 640.392616 1278.77068 NaN NaN NaN NaN NaN NaN NaN 52.118 1 55.716 55.216 56.216 3.5979 0 0 0 0.38417 1 10741 10741 1.1933 0 1 39212 5666 24818 24829 44552 44552 0.14244502081464816 RVAMMGQCPCL 11 Unmodified _RVAMMGQCPCL_ 0 0 0 ENST00000462525.1_1_1:16268884-16269016:-|nuORF ENST00000462525.1_1_1:16268884-16269016:-|nuORF ENST00000462525.1_1_1:16268884-16269016:-|nuORF MSMS UPN48_class_I_Rep_2 6 604.7745361328125 2 604.773982 1207.53341 NaN NaN NaN NaN NaN NaN NaN 16.752 1 20.405 19.905 20.905 3.6527 0 0 0 0.38417 1 878 878 0 0 1 39213 6867 24819 24830 44553 44553 -0.06205471510043026 RVANVERSCT 10 Unmodified _RVANVERSCT_ 0 0 0 ENST00000552422.5_1_12:70671967-70701491:+|nuORF ENST00000552422.5_1_12:70671967-70701491:+|nuORF ENST00000552422.5_1_12:70671967-70701491:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 567.7881469726562 2 567.787847 1133.56114 0.51835 0.00029431 -0.57945 -0.00032901 -0.061103 -3.4694E-05 567.7873587765905 56.122 0.8231 59.422 59.063 59.886 3.3009 112 48 3 0 0 0 0.56155 1 12918 12918 2.7352 0.67545 1 272150 39214 7407 24820 24831 44554 44554 -0.0002978566230922297 RVAPEEHPV 9 Unmodified _RVAPEEHPV_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MSMS UPN46_class_I_Rep_3 1 517.2750854492188 2 517.274898 1032.53524 NaN NaN NaN NaN NaN NaN NaN 24.184 1 24.184 23.684 24.684 0 0 0 0 0.37891 1 3143 3143 5.7319 0.50118 1 39215 1146 24821 24832 44555 44555 0.02027688157704688 RVAPEEHPVL 10 Unmodified _RVAPEEHPVL_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MSMS UPN46_class_I_Rep_3 1 573.8167724609375 2 573.81693 1145.61931 NaN NaN NaN NaN NaN NaN NaN 36.558 1 36.558 36.058 37.058 0 0 0 0 0.53105 1 6788 6788 7.1017 1.3699 1 39216 1146 24822 24833 44556 44556 0.052322192545943835 RVAPEEHPVL 10 Unmodified _RVAPEEHPVL_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MSMS UPN46_class_I_Rep_3 1 573.81689453125 2 573.81693 1145.61931 NaN NaN NaN NaN NaN NaN NaN 36.58 1 36.58 36.08 37.08 0 0 0 0 0.53105 1 6795 6795 4.897 0.141 1 39217 1146 24822 24833 44557 44557 0.052322192545943835 RVAPEEHPVL 10 Unmodified _RVAPEEHPVL_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN47_class_I_Rep_1 2 573.816650390625 2 573.81693 1145.61931 -0.075892 -4.3548E-05 0.56485 0.00032412 0.48895 0.00028057 573.817196700295 31.65 0.66537 35.38 35.078 35.744 3.7293 86 49 2 0 0 0 0.51021 3 5285 5285;5326;5384 10.8 2.644 1 116470 39218 1146 24822 24833 44558;44559;44560 44558 0.052322192545943835 RVAPEEHPVL 10 Unmodified _RVAPEEHPVL_ 0 0 0 ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF ENSG00000075624|ENST00000646664|ACTB ENSG00000075624|ENST00000646664|ACTB MULTI-MSMS UPN47_class_I_Rep_2 3 573.8175048828125 2 573.81693 1145.61931 0.04615 2.6481E-05 -0.074223 -4.2591E-05 -0.028074 -1.6109E-05 573.8169521035024 31.854 0.86652 35.323 34.982 35.849 3.4691 113 62 3 0 0 0 0.53794 1 5412 5412 7.1017 1.8711 1 115620 39219 1146 24822 24833 44561 44561 0.052322192545943835 RVAVWIYL 8 Unmodified _RVAVWIYL_ 0 0 0 REV__L1MEg_dup12201|chr15:50091835-50094029:+|3.130046134750743|0.0048361767732893|9.34|151.0|112|1|anti-sense REV__L1MEg_dup12201|chr15:50091835-50094029:+|3.130046134750743|0.0048361767732893|9.34|151.0|112|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 509.80401611328125 2 510.30547 1018.59639 0.29997 0.00015308 -2.2702 -0.0011585 -1.9702 -0.0010054 510.30442185822363 79.47 0.052521 79.47 79.432 79.485 0 6 4 2 0 0 0 0.72333 1 18659 18659 0.79363 0 1 53328 + 39220 28719 24823 24834 44562 44562 0.08783244927781197 RVAWPSHCIQG 11 Unmodified _RVAWPSHCIQG_ 0 0 0 HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|297|3|anti-sense;HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|273|2|anti-sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|297|3|anti-sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|297|3|anti-sense MSMS UPN48_class_I_Rep_2 6 627.3134765625 2 627.314032 1252.61351 NaN NaN NaN NaN NaN NaN NaN 39.302 1 43.032 42.532 43.532 3.7297 0 0 0 0.38417 1 6956 6956 1.0715 0.10919 1 39221 8050 24824 24835 44563 44563 -0.0026920252871605044 RVCFRVLH 8 Unmodified _RVCFRVLH_ 0 0 0 REV__ENSG00000177992|ENST00000325643|SPATA31E1 REV__ENSG00000177992|ENST00000325643|SPATA31E1 MSMS UPN47_class_I_Rep_1 2 515.2922973632812 2 515.292371 1028.57019 NaN NaN NaN NaN NaN NaN NaN 23.183 1 26.887 26.387 27.387 3.7042 0 0 0 0.40746 1 2825 2825 0.69038 0 1 + 39222 20635 24825 24836 44564 44564 0.05704652484678263 RVCGAGRHRRS 11 Unmodified _RVCGAGRHRRS_ 0 0 0 REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF MSMS UPN46_class_I_Rep_3 1 627.8375244140625 2 627.839071 1253.66359 NaN NaN NaN NaN NaN NaN NaN 49.071 1 49.071 48.571 49.571 0 0 0 0 0.29037 1 10275 10275 12.873 0.63195 1 + 39223 22547 24826 24837 44565 44565 0.046903449198225644 RVCGAGRHRRS 11 Unmodified _RVCGAGRHRRS_ 0 0 0 REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF REV__ENST00000485673.5_1_20:57464182-57464599:+|nuORF MSMS UPN46_class_I_Rep_3 1 627.8374633789062 2 627.839071 1253.66359 NaN NaN NaN NaN NaN NaN NaN 49.205 1 49.205 48.705 49.705 0 0 0 0 0.26612 1 10312 10312 14.405 2.1647 1 + 39224 22547 24826 24837 44566 44566 0.046903449198225644 RVCKKLQV 8 Unmodified _RVCKKLQV_ 0 0 0 REV__ENST00000398965.5_2_4:128932831-128941263:+|nuORF REV__ENST00000398965.5_2_4:128932831-128941263:+|nuORF MSMS UPN47_class_I_Rep_3 4 487.3032531738281 2 487.302404 972.590256 NaN NaN NaN NaN NaN NaN NaN 110.56 1 114.09 113.59 114.59 3.529 0 0 0 0.40746 1 27130 27130 0.69038 0 1 + 39225 22147 24827 24838 44567 44567 0.10286403424640866 RVCVGQTFRL 10 Unmodified _RVCVGQTFRL_ 0 0 0 REV__L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|144|2|anti-sense REV__L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|144|2|anti-sense MSMS UPN47_class_I_Rep_2 3 589.8243408203125 2 589.826775 1177.639 NaN NaN NaN NaN NaN NaN NaN 61.285 1 64.55 64.05 65.05 3.2654 0 0 0 0.53105 1 14395 14395 2.9952 0.69251 1 + 39226 30636 24828 24839 44568 44568 0.05728271993734779 RVCVRLVLFIR 11 Unmodified _RVCVRLVLFIR_ 0 0 0 L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.95806884765625 3 458.623586 1372.84893 0.20818 9.5477E-05 0.50796 0.00023296 0.71614 0.00032844 458.6237207186257 105.76 0.065857 105.76 105.73 105.79 0 9 8 2 0 0 0 0.68478 1 25802 25802 0.094841 0 1 155300 39227 12477 24829 24840 44569 44569 0.1774193466669658 RVCVRLVLFIR 11 Unmodified _RVCVRLVLFIR_ 0 0 0 L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 458.623586 1372.84893 0.036143 1.6576E-05 0.019352 8.8755E-06 0.055495 2.5451E-05 458.6238035966595 102.12 0.056526 105.73 105.71 105.77 3.6152 -0.09417 -0.0009026 NaN 0.094841 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 55002 39228 12477 24829 24840 0.1774193466669658 RVCVRLVLFIR 11 Unmodified _RVCVRLVLFIR_ 0 0 0 L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense L1ME2_dup1381|chr2:55035135-55036319:+|1.3052597141681677|0.0465748583166402|4.81|151.0|50|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 458.623586 1372.84893 0.18131 8.3152E-05 1.2598 0.00057776 1.4411 0.00066091 458.62415597224305 102.22 0.046967 105.99 105.98 106.03 3.776 0.16455 0.00080406 NaN 0.094841 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 246490 39229 12477 24829 24840 0.1774193466669658 RVCYKVLKA 9 Unmodified _RVCYKVLKA_ 0 0 0 HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|339|3|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|339|3|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|339|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.323337 1078.63212 NaN NaN NaN NaN NaN NaN NaN 37.404 1 37.404 36.904 37.904 0 0 0 0 0.4007 1 7030 7030 0.52476 0 1 39230 8052 24830 24841 44570 44570 0.09594959113132973 RVDEEPTTL 9 Unmodified _RVDEEPTTL_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000608163.1_1_10:46215370-46222350:-|nuORF nc|ENSG00000172661|Q9Y4E1-3|WASHC2C nc|ENSG00000172661|Q9Y4E1-3|WASHC2C MULTI-MSMS UPN47_class_I_Rep_1 2 530.26904296875 2 530.269478 1058.5244 -0.089903 -4.7673E-05 0.28161 0.00014933 0.19171 0.00010166 530.2694864693062 33.128 0.63473 36.826 36.591 37.226 3.6983 84 43 3 0 0 0 0.32682 3 5768 5768;5810;5860 12.241 2.6967 1 124480 39231 1433 24831 24842 44571;44572;44573 44571 -0.0025175900723297673 RVDEEPTTL 9 Unmodified _RVDEEPTTL_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000608163.1_1_10:46215370-46222350:-|nuORF nc|ENSG00000172661|Q9Y4E1-3|WASHC2C nc|ENSG00000172661|Q9Y4E1-3|WASHC2C MULTI-MSMS UPN47_class_I_Rep_2 3 530.2694702148438 2 530.269478 1058.5244 -0.16187 -8.5836E-05 0.43249 0.00022934 0.27062 0.0001435 530.2694126715162 33.367 0.69212 36.807 36.578 37.27 3.4398 86 48 3 0 0 0 0.19147 3 5892 5892;5932;5981 21.537 7.6309 1 116870 39232 1433 24831 24842 44574;44575;44576 44574 -0.0025175900723297673 RVDEEPTTL 9 Unmodified _RVDEEPTTL_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000608163.1_1_10:46215370-46222350:-|nuORF nc|ENSG00000172661|Q9Y4E1-3|WASHC2C nc|ENSG00000172661|Q9Y4E1-3|WASHC2C MULTI-MSMS UPN47_class_I_Rep_3 4 530.2693481445312 2 530.269478 1058.5244 -0.19228 -0.00010196 0.060946 3.2318E-05 -0.13133 -6.9641E-05 530.2694164268829 33.572 0.53199 36.847 36.592 37.124 3.2748 83 37 3 0 0 0 0.26468 5 5971 5956;5961;5971;6012;6053 16.149 6.0752 1 148960 39233 1433 24831 24842 44577;44578;44579;44580;44581 44579 -0.0025175900723297673 RVDELLEKY 9 Unmodified _RVDELLEKY_ 0 0 0 ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A ENST00000441170.1_1_4:118496255-118496735:-|nuORF ENST00000441170.1_1_4:118496255-118496735:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 582.8156127929688 2 582.816596 1163.61864 0.03261 1.9006E-05 0.089309 5.2051E-05 0.12192 7.1056E-05 582.8165463825657 42.947 0.61022 46.634 46.319 46.929 3.6875 84 43 3 0 0 0 0.27121 4 8763 8709;8745;8763;8814 15.739 6.9932 1 116610 39234 2394 24832 24843 44582;44583;44584;44585 44584 0.043373798149104914 RVDELLEKY 9 Unmodified _RVDELLEKY_ 0 0 0 ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A ENST00000441170.1_1_4:118496255-118496735:-|nuORF ENST00000441170.1_1_4:118496255-118496735:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 582.81640625 2 582.816596 1163.61864 0.12661 7.3788E-05 -0.05613 -3.2713E-05 0.070476 4.1074E-05 582.8165953487094 43.227 0.54441 46.585 46.343 46.888 3.358 67 37 2 0 0 0 0.27121 3 8934 8847;8931;8934 15.739 4.2439 1 93111 39235 2394 24832 24843 44586;44587;44588 44588 0.043373798149104914 RVDELLEKY 9 Unmodified _RVDELLEKY_ 0 0 0 ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A ENST00000441170.1_1_4:118496255-118496735:-|nuORF ENST00000441170.1_1_4:118496255-118496735:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 582.8170776367188 2 582.816596 1163.61864 0.13871 8.0843E-05 0.038205 2.2267E-05 0.17692 0.00010311 582.8168658032945 43.387 0.54692 46.628 46.432 46.979 3.2419 55 34 3 0 0 0 0.31677 3 9033 8985;9033;9050 12.873 4.1272 1 100990 39236 2394 24832 24843 44589;44590;44591 44590 0.043373798149104914 RVDENNPEY 9 Unmodified _RVDENNPEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MSMS UPN47_class_I_Rep_1 2 568.2543334960938 2 568.25436 1134.49417 NaN NaN NaN NaN NaN NaN NaN 22.792 1 26.496 25.996 26.996 3.7042 0 0 0 0.38916 1 2709 2709 3.2813 0 1 39237 1297 24833 24844 44592 44592 -0.06770117672431297 RVDENNPEY 9 Unmodified _RVDENNPEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MSMS UPN47_class_I_Rep_1 2 568.25439453125 2 568.25436 1134.49417 NaN NaN NaN NaN NaN NaN NaN 23.115 1 26.819 26.319 27.319 3.7042 0 0 0 0.38916 1 2806 2806 3.2813 0 1 39238 1297 24833 24844 44593 44593 -0.06770117672431297 RVDENNPEY 9 Unmodified _RVDENNPEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_2 3 568.254150390625 2 568.25436 1134.49417 0.04727 2.6861E-05 -0.48262 -0.00027425 -0.43535 -0.00024739 568.2541892049514 23.211 0.3468 26.656 26.42 26.766 3.4447 50 29 2 0 0 0 0.47493 2 2848 2848;2888 3.2813 0.54611 1 32793 39239 1297 24833 24844 44594;44595 44594 -0.06770117672431297 RVDENNPEY 9 Unmodified _RVDENNPEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_3 4 568.7554321289062 2 568.25436 1134.49417 -0.28708 -0.00016313 1.0214 0.00058043 0.73436 0.0004173 568.2544633994444 23.252 0.22158 26.602 26.548 26.77 3.3503 26 16 2 0 0 0 0.43153 2 2926 2926;2950 6.2058 0 1 36320 39240 1297 24833 24844 44596;44597 44596 -0.06770117672431297 RVDENNPEY 9 Unmodified _RVDENNPEY_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MSMS UPN47_class_I_Rep_3 4 568.2542724609375 2 568.25436 1134.49417 NaN NaN NaN NaN NaN NaN NaN 23.162 1 26.512 26.012 27.012 3.3503 0 0 0 0.38916 1 2896 2896 3.2813 0 1 39241 1297 24833 24844 44598 44598 -0.06770117672431297 RVDIIRAHQSA 11 Unmodified _RVDIIRAHQSA_ 0 0 0 REV__AluJb_dup41635|chr6:32588176-32588468:+|1.4204809200495505|0.3022013313908192|2.23|150.0|19|3|anti-sense REV__AluJb_dup41635|chr6:32588176-32588468:+|1.4204809200495505|0.3022013313908192|2.23|150.0|19|3|anti-sense MSMS UPN48_class_I_Rep_1 5 633.3689575195312 2 633.357285 1264.70002 NaN NaN NaN NaN NaN NaN NaN 88.93 1 92.553 92.053 93.053 3.6229 0 0 0 0.37931 1 21340 21340 7.1017 0.89594 1 + 39242 16946 24834 24845 44599 44599 0.0782550029750837 RVDPAKGLFY 10 Unmodified _RVDPAKGLFY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN47_class_I_Rep_1 2 583.3217163085938 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 45.981 1 49.681 49.181 50.181 3.6999 0 0 0 0.53105 1 9710 9710 4.5289 0.19963 1 39243 3340 24835 24846 44600 44600 0.053414072599935025 RVDPAKGLFY 10 Unmodified _RVDPAKGLFY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN47_class_I_Rep_1 2 583.3225708007812 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 46.148 1 49.847 49.347 50.347 3.6999 0 0 0 0.53105 1 9761 9761 6.6304 0.89852 1 39244 3340 24835 24846 44601 44601 0.053414072599935025 RVDPAKGLFY 10 Unmodified _RVDPAKGLFY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN47_class_I_Rep_3 4 583.3771362304688 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 46.971 1 50.214 49.714 50.714 3.2439 0 0 0 0.53105 1 10096 10096 5.2969 1.7004 1 39245 3340 24835 24846 44602 44602 0.053414072599935025 RVDQSLLLY 9 Unmodified _RVDQSLLLY_ 0 0 0 ENST00000571394.1_1_17:80918331-80919063:-|nuORF;ENST00000571954.5_1_17:80918331-81006625:-|nuORF;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|2|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|3|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|4|intron;ENSG00000175711|ENST00000320865|B3GNTL1;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|1|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|7|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|5|intron ENST00000571394.1_1_17:80918331-80919063:-|nuORF ENST00000571394.1_1_17:80918331-80919063:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.8141479492188 2 553.813856 1105.61316 0.35457 0.00019637 -0.3493 -0.00019344 0.0052757 2.9218E-06 553.8135969840108 57.714 0.86859 60.882 60.509 61.377 3.1681 159 65 3 0 0 0 0.17897 1 13411 13411 22.736 0 1 539010 39246 4734 24836 24847 44603 44603 0.06457701023100526 RVDQSLLLY 9 Unmodified _RVDQSLLLY_ 0 0 0 ENST00000571394.1_1_17:80918331-80919063:-|nuORF;ENST00000571954.5_1_17:80918331-81006625:-|nuORF;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|2|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|3|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|4|intron;ENSG00000175711|ENST00000320865|B3GNTL1;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|1|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|7|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|5|intron ENST00000571394.1_1_17:80918331-80919063:-|nuORF ENST00000571394.1_1_17:80918331-80919063:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 553.813856 1105.61316 0.40142 0.00022231 -0.19564 -0.00010835 0.20578 0.00011397 553.8136857017986 57.326 0.82175 60.763 60.428 61.25 3.437 -0.05889 0.0001367 NaN 22.736 171 73 3 NaN NaN NaN NaN 0 NaN NaN 0 499960 39247 4734 24836 24847 0.06457701023100526 RVDQSLLLY 9 Unmodified _RVDQSLLLY_ 0 0 0 ENST00000571394.1_1_17:80918331-80919063:-|nuORF;ENST00000571954.5_1_17:80918331-81006625:-|nuORF;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|2|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|3|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|4|intron;ENSG00000175711|ENST00000320865|B3GNTL1;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|1|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|7|intron;ENSG00000175711.8,B3GNTL1,chr17,-,I16.1,82949949,82956694|128|19.28|5|intron ENST00000571394.1_1_17:80918331-80919063:-|nuORF ENST00000571394.1_1_17:80918331-80919063:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 553.813856 1105.61316 0.35457 0.00019637 -0.3493 -0.00019344 0.0052757 2.9218E-06 553.8135969840108 57.714 0.86859 60.882 60.509 61.377 3.1681 0.060319 -3.3497E-05 NaN 22.736 159 65 3 NaN NaN NaN NaN 0 NaN NaN 0 539010 39248 4734 24836 24847 0.06457701023100526 RVDTLVFLP 9 Unmodified _RVDTLVFLP_ 0 0 0 L1MEf_dup8662|chr12:109972012-109972471:-|1.782678399283521|0.0309623860152843|5.85|151.0|27|2|anti-sense L1MEf_dup8662|chr12:109972012-109972471:-|1.782678399283521|0.0309623860152843|5.85|151.0|27|2|anti-sense L1MEf_dup8662|chr12:109972012-109972471:-|1.782678399283521|0.0309623860152843|5.85|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 530.3059692382812 2 530.313492 1058.61243 NaN NaN NaN NaN NaN NaN NaN 28.7 1 32.442 31.942 32.942 3.7424 0 0 0 0.39428 1 3936 3936 2.0598 0 1 39249 13328 24837 24848 44604 44604 0.08546906374044738 RVDYEYEI 8 Unmodified _RVDYEYEI_ 0 0 0 REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA MSMS UPN47_class_I_Rep_2 3 543.7423095703125 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 20.448 1 23.856 23.356 24.356 3.4074 0 0 0 0.40604 1 2124 2124 2.5775 0 1 + 39250 17597 24838 24849 44605 44605 -0.03639144035969366 RVEFDIVF 8 Unmodified _RVEFDIVF_ 0 0 0 REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 512.7760009765625 2 512.776742 1023.53893 0.27035 0.00013863 -0.2185 -0.00011204 0.051848 2.6587E-05 512.776512232153 76.148 0.33337 79.647 79.517 79.85 3.4996 68 38 2 0 0 0 0.82752 2 18101 18069;18101 15.847 0 1 106680 + 39251 25449 24839 24850 44606;44607 44607 0.028103579315711613 RVEFDIVF 8 Unmodified _RVEFDIVF_ 0 0 0 REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 512.2620239257812 2 512.776742 1023.53893 0.27035 0.00013863 -0.2185 -0.00011204 0.051848 2.6587E-05 512.776512232153 76.148 0.33337 79.647 79.517 79.85 3.4996 68 38 2 0 0 0 0.72333 1 18086 18086 21.747 0 1 106680 + 39252 25449 24839 24850 44608 44608 0.028103579315711613 RVEFDIVF 8 Unmodified _RVEFDIVF_ 0 0 0 REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 512.776123046875 2 512.776742 1023.53893 0.32144 0.00016483 -0.35717 -0.00018315 -0.035734 -1.8324E-05 512.7763440722423 76.035 0.29217 79.637 79.542 79.834 3.6011 67 37 2 0 0 0 0.82752 1 17975 17975 18.135 0 1 116100 + 39253 25449 24839 24850 44609 44609 0.028103579315711613 RVEFDIVF 8 Unmodified _RVEFDIVF_ 0 0 0 REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 512.261474609375 2 512.776742 1023.53893 0.35554 0.00018231 -0.30831 -0.00015809 0.047238 2.4222E-05 512.776409803832 75.961 0.16628 79.544 79.435 79.602 3.5831 30 18 2 0 0 0 0.72333 1 17878 17878 28.487 0 1 129760 + 39254 25449 24839 24850 44610 44610 0.028103579315711613 RVEFDIVF 8 Unmodified _RVEFDIVF_ 0 0 0 REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense REV__L1MA6_dup2612|chr8:51863978-51867476:+|2.54265893493817|0.0997577385684127|4.67|151.0|176|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 512.776742 1023.53893 0.26982 0.00013836 -0.5338 -0.00027372 -0.26398 -0.00013536 512.7764927384691 76.41 0.073509 79.921 79.902 79.976 3.5102 0.18841 -0.00016113 NaN 28.487 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 34832 + 39255 25449 24839 24850 0.028103579315711613 RVEIFNSRT 9 Unmodified _RVEIFNSRT_ 0 0 0 REV__L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|2|1|sense REV__L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.3067016601562 2 561.306729 1120.59891 0.3185 0.00017878 -0.43461 -0.00024395 -0.11611 -6.5172E-05 561.3064886336167 28.685 0.69286 32.427 32.168 32.861 3.7424 128 76 2 0 0 0 0.47197 1 3968 3968 3.5965 0 1 97318 + 39256 26169 24840 24851 44611 44611 0.043430485948192654 RVEKNIYR 8 Unmodified _RVEKNIYR_ 0 0 0 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 MULTI-MSMS UPN46_class_I_Rep_3 1 539.814208984375 2 539.311815 1076.60908 0.10913 5.8854E-05 -0.038 -2.0494E-05 0.071128 3.836E-05 539.3117402693862 30.349 1.316 30.349 29.985 31.301 0 196 105 2 0 0 0 0.82752 1 5143 5143 6.2058 0.9089 1 701240 + 39257 18750 24841 24852 44612 44612 0.07383656320052978 RVEKNIYR 8 Unmodified _RVEKNIYR_ 0 0 0 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 MULTI-MSMS UPN46_class_I_Rep_3 1 539.3107299804688 2 539.311815 1076.60908 0.2374 0.00012803 -0.12623 -6.808E-05 0.11117 5.9955E-05 539.311690399167 36.249 0.9645 36.249 35.821 36.785 0 148 78 2 0 0 0 0.82752 2 6604 6604;6808 16.149 1.7437 1 552070 + 39258 18750 24841 24852 44613;44614 44613 0.07383656320052978 RVERARGPPL 10 Unmodified _RVERARGPPL_ 0 0 0 ENSG00000120055|ENST00000625129|C10orf95 ENSG00000120055|ENST00000625129|C10orf95 ENSG00000120055|ENST00000625129|C10orf95 MULTI-SECPEP UPN46_class_I_Rep_3 1 575.844482421875 2 575.843813 1149.67307 0.49424 0.0002846 -1.8428 -0.0010612 -1.3485 -0.00077655 575.8424790833736 87.751 0.19178 87.751 87.679 87.871 0 26 20 2 0 0 0 0.84575 1 21071 21071 4.897 4.897 1 753340 39259 2313 24842 24853 44615 44615 0.10422436476983421 RVFFPFFR 8 Unmodified _RVFFPFFR_ 0 0 0 ENST00000249636.10_1_15:68480212-68480365:+|nuORF ENST00000249636.10_1_15:68480212-68480365:+|nuORF ENST00000249636.10_1_15:68480212-68480365:+|nuORF MSMS UPN48_class_I_Rep_3 7 558.3130493164062 2 558.311087 1114.60762 NaN NaN NaN NaN NaN NaN NaN 40.757 1 44.408 43.908 44.908 3.6509 0 0 0 0.40604 1 7286 7286 2.5775 0.51773 1 39260 5915 24843 24854 44616 44616 0.05490067021946743 RVFGRHRV 8 Unmodified _RVFGRHRV_ 0 0 0 LTR27D_dup58|chr3:121918874-121919737:-|1.8999507344958395|0.1069640161325027|4.15|151.0|28|3|sense LTR27D_dup58|chr3:121918874-121919737:-|1.8999507344958395|0.1069640161325027|4.15|151.0|28|3|sense LTR27D_dup58|chr3:121918874-121919737:-|1.8999507344958395|0.1069640161325027|4.15|151.0|28|3|sense MSMS UPN47_class_I_Rep_2 3 513.8072509765625 2 513.807034 1025.59952 NaN NaN NaN NaN NaN NaN NaN 96.245 1 99.724 99.224 100.22 3.4791 0 0 0 0.40746 1 23658 23658 0.69038 0 1 39261 15611 24844 24855 44617 44617 0.0877393282517005 RVFHKKVL 8 Unmodified _RVFHKKVL_ 0 0 0 REV__Tigger1_dup8635|chr11:66120983-66123189:+|5.679363049804595|0.0567648197175665|6.64|151.0|34|2|sense REV__Tigger1_dup8635|chr11:66120983-66123189:+|5.679363049804595|0.0567648197175665|6.64|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.8314208984375 2 513.832186 1025.64982 0.37661 0.00019351 -1.3865 -0.00071241 -1.0099 -0.00051889 513.8314152611812 63.069 0.49364 66.532 66.315 66.808 3.4625 46 32 2 0 0 0 0.82752 1 14142 14142 8.5933 2.3875 1 207290 + 39262 32549 24845 24856 44618 44618 0.13802042430324946 RVFKGGFY 8 Unmodified _RVFKGGFY_ 0 0 0 L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|36|1|anti-sense L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|36|1|anti-sense L1MEh_dup597|chr3:128917307-128918187:+|1.4915878681700745|0.2220177501892384|2.75|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.2662048339844 2 487.266345 972.518136 -0.07318 -3.5658E-05 0.045871 2.2352E-05 -0.027309 -1.3307E-05 487.2662576065727 43.025 1.044 46.383 45.976 47.02 3.358 105 70 2 0 0 0 0.82752 1 8859 8859 9.3474 0 1 115540 39263 13443 24846 24857 44619 44619 0.030778123425761805 RVFKWVCF 8 Unmodified _RVFKWVCF_ 0 0 0 REV__ENSG00000156096|ENST00000305107|UGT2B4 REV__ENSG00000156096|ENST00000305107|UGT2B4 MSMS UPN46_class_I_Rep_3 1 542.7930908203125 2 542.791672 1083.56879 NaN NaN NaN NaN NaN NaN NaN 79.274 1 79.274 78.774 79.774 0 0 0 0 0.40738 1 18614 18614 0.79363 0 1 + 39264 19783 24847 24858 44620 44620 0.030350183959171773 RVFLPDEQRT 10 Unmodified _RVFLPDEQRT_ 0 0 0 REV__ENST00000472011.5_1_1:235530775-235577785:+|nuORF REV__ENST00000472011.5_1_1:235530775-235577785:+|nuORF MSMS UPN47_class_I_Rep_3 4 421.22894287109375 3 420.894688 1259.66223 NaN NaN NaN NaN NaN NaN NaN 91.529 1 94.931 94.431 95.431 3.401 0 0 0 0.53105 1 22888 22888 3.0723 0.81953 1 + 39265 22505 24848 24859 44621 44621 0.04278989312047088 RVFLPDEQRT 10 Unmodified _RVFLPDEQRT_ 0 0 0 REV__ENST00000472011.5_1_1:235530775-235577785:+|nuORF REV__ENST00000472011.5_1_1:235530775-235577785:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 420.8947448730469 3 420.894688 1259.66223 0.082148 3.4575E-05 0.15924 6.7025E-05 0.24139 0.0001016 420.89463914857623 91.333 0.50815 95.088 94.771 95.279 3.7554 136 76 2 0 0 0 0.55583 1 21777 21777 4.7159 0 1 5916500 + 39266 22505 24848 24859 44622 44622 0.04278989312047088 RVFPYISV 8 Unmodified _RVFPYISV_ 0 0 0 ENST00000502721.5_1_5:176764092-176765519:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000502721.5_1_5:176764092-176765519:-|nuORF ENST00000502721.5_1_5:176764092-176765519:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.7829284667969 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 110.92 1 114.5 114 115 3.5835 0 0 0 0.40625 1 27350 27350 2.3027 0 1 39267 4412 24849 24860 44623 44623 0.05850965656804874 RVFPYISV 8 Unmodified _RVFPYISV_ 0 0 0 ENST00000502721.5_1_5:176764092-176765519:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000502721.5_1_5:176764092-176765519:-|nuORF ENST00000502721.5_1_5:176764092-176765519:-|nuORF MSMS UPN48_class_I_Rep_1 5 490.781494140625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 32.536 1 36.063 35.563 36.563 3.5266 0 0 0 0.40746 1 4960 4960 0.69038 0 1 39268 4412 24849 24860 44624 44624 0.05850965656804874 RVFPYISV 8 Unmodified _RVFPYISV_ 0 0 0 ENST00000502721.5_1_5:176764092-176765519:-|nuORF;ENSG00000169223|ENST00000303127|LMAN2 ENST00000502721.5_1_5:176764092-176765519:-|nuORF ENST00000502721.5_1_5:176764092-176765519:-|nuORF MSMS UPN48_class_I_Rep_2 6 490.7819519042969 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 22.381 1 26.027 25.527 26.527 3.6459 0 0 0 0.40625 1 2276 2276 2.3027 0 1 39269 4412 24849 24860 44625 44625 0.05850965656804874 RVFRHYQG 8 Unmodified _RVFRHYQG_ 0 0 0 MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|84|1|anti-sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|84|1|anti-sense MER50-int_dup249|chr9:92983638-92985415:-|2.75266357293311|0.0329198701015931|6.39|151.0|84|1|anti-sense MSMS UPN47_class_I_Rep_1 2 531.8008422851562 2 531.783225 1061.5519 NaN NaN NaN NaN NaN NaN NaN 51.917 1 55.51 55.01 56.01 3.5932 0 0 0 0.39624 1 11513 11513 9.3474 0 1 39270 16063 24850 24861 44626 44626 0.023582338343203446 RVFYPHFM 8 Unmodified _RVFYPHFM_ 0 0 0 L1PB1_dup2737|chr3:177092926-177094979:+|2.217568582492505|0.0280863562215906|6.3|151.0|107|2|anti-sense L1PB1_dup2737|chr3:177092926-177094979:+|2.217568582492505|0.0280863562215906|6.3|151.0|107|2|anti-sense L1PB1_dup2737|chr3:177092926-177094979:+|2.217568582492505|0.0280863562215906|6.3|151.0|107|2|anti-sense MSMS UPN46_class_I_Rep_3 1 548.7724609375 2 548.77348 1095.53241 NaN NaN NaN NaN NaN NaN NaN 16.693 1 16.693 16.193 17.193 0 0 0 0 0.40738 1 1192 1192 0.79363 0.10326 1 39271 15074 24851 24862 44627 44627 -0.011538585008111113 RVGALIIM 8 Unmodified _RVGALIIM_ 0 0 0 REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|109|1|anti-sense REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|109|1|anti-sense MSMS UPN47_class_I_Rep_1 2 436.7747802734375 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 82.89 1 86.429 85.929 86.929 3.5386 0 0 0 0.40625 1 20718 20718 2.3027 0 1 + 39272 30413 24852 24863 44628 44628 0.09043927130301199 RVGDVYIPR 9 Unmodified _RVGDVYIPR_ 0 0 0 nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2;nc|ENSG00000263465|Q9BRL6-2|SRSF8;ENSG00000263465|ENST00000587424|SRSF8 nc|ENSG00000161547|Q01130-2|SRSF2 nc|ENSG00000161547|Q01130-2|SRSF2 MULTI-SECPEP UPN46_class_I_Rep_3 1 538.2484130859375 2 537.806365 1073.59818 0.32613 0.00017539 0.30847 0.0001659 0.63459 0.00034129 537.8062684746532 40.644 0.68523 40.644 40.201 40.887 0 106 79 2 0 0 0 0.027903 1 7906 7906 65.474 25.516 1 258010 39273 3902 24853 24864 44629 44629 0.0643225394574074 RVGKRLAQ 8 Unmodified _RVGKRLAQ_ 0 0 0 REV__ENSG00000099985|ENST00000215781|OSM REV__ENSG00000099985|ENST00000215781|OSM MULTI-SECPEP UPN48_class_I_Rep_1 5 464.2962341308594 2 464.295968 926.577383 0.05676 2.6353E-05 -0.14605 -6.7812E-05 -0.089293 -4.1459E-05 464.29584317044703 107.53 0.066833 111.16 111.12 111.18 3.6313 13 8 2 0 0 0 0.72333 1 25917 25917 4.756 4.756 1 2233900 + 39274 18081 24854 24865 44630 44630 0.11115708356737741 RVGKRLAQ 8 Unmodified _RVGKRLAQ_ 0 0 0 REV__ENSG00000099985|ENST00000215781|OSM REV__ENSG00000099985|ENST00000215781|OSM MULTI-MATCH UPN47_class_I_Rep_1 2 2 464.295968 926.577383 0.2112 9.8061E-05 -0.21027 -9.7628E-05 0.0009322 4.3282E-07 464.29580514891893 107.53 0.092262 111.2 111.17 111.27 3.6724 0.017649 -2.7484E-05 NaN 4.756 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 590840 + 39275 18081 24854 24865 0.11115708356737741 RVGRQLPVIDL 11 Unmodified _RVGRQLPVIDL_ 0 0 0 REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 633.3875122070312 2 633.388054 1264.76155 0.49536 0.00031376 -1.2414 -0.0007863 -0.74606 -0.00047254 633.3871222206097 85.995 0.52337 89.701 89.362 89.885 3.7058 80 55 2 0 0 0 0.64331 1 20446 20446 7.609 4.8738 1 146660 + 39276 22533 24855 24866 44631 44631 0.13976431996798055 RVGRRIFI 8 Unmodified _RVGRRIFI_ 0 0 0 nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS MSMS UPN47_class_I_Rep_2 3 508.82794189453125 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 81.017 1 84.401 83.901 84.901 3.3839 0 0 0 0.40798 1 20174 20174 0 0 1 39277 16758 24856 24867 44632 44632 0.13312274144777803 RVGRRIFI 8 Unmodified _RVGRRIFI_ 0 0 0 nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS MSMS UPN47_class_I_Rep_3 4 508.82763671875 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 65.726 1 68.905 68.405 69.405 3.1795 0 0 0 0.40798 1 15804 15804 0 0 1 39278 16758 24856 24867 44633 44633 0.13312274144777803 RVGYLCLFF 9 Unmodified _RVGYLCLFF_ 0 0 0 REV__L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|224|2|anti-sense REV__L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|224|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2966918945312 2 559.296788 1116.57902 NaN NaN NaN NaN NaN NaN NaN 64.911 1 68.39 67.89 68.89 3.4792 0 0 0 0.39326 1 14714 14714 2.3027 0.4585 1 + 39279 30432 24857 24868 44634 44634 0.025395813304839976 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 489.80584716796875 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 64.716 1 67.972 67.472 68.472 3.2556 0 0 0 0.40746 1 15437 15437 0.69038 0 1 + 39280 17178 24858 24869 44635 44635 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 489.806396484375 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 69.512 1 72.788 72.288 73.288 3.2761 0 0 0 0.40746 1 16884 16884 0.69038 0 1 + 39281 17178 24858 24869 44636 44636 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 489.8061218261719 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 71.031 1 74.314 73.814 74.814 3.2828 0 0 0 0.40625 1 17338 17338 2.3027 1.5091 1 + 39282 17178 24858 24869 44637 44637 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 489.80572509765625 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 72.006 1 75.295 74.795 75.795 3.2899 0 0 0 0.40746 1 17629 17629 0.69038 0 1 + 39283 17178 24858 24869 44638 44638 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 489.8059997558594 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 70.282 1 73.493 72.993 73.993 3.2113 0 0 0 0.40746 1 17184 17184 0.69038 0 1 + 39284 17178 24858 24869 44639 44639 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 489.8059997558594 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 72.581 1 75.808 75.308 76.308 3.2271 0 0 0 0.40746 1 17875 17875 0.69038 0 1 + 39285 17178 24858 24869 44640 44640 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 489.8056945800781 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 78.45 1 81.732 81.232 82.232 3.2816 0 0 0 0.40746 1 19566 19566 0.69038 0 1 + 39286 17178 24858 24869 44641 44641 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 489.8063659667969 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 88.687 1 92.425 91.925 92.925 3.7379 0 0 0 0.40746 1 21110 21110 0.69038 0 1 + 39287 17178 24858 24869 44642 44642 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN48_class_I_Rep_3 7 489.8064880371094 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 72.947 1 76.485 75.985 76.985 3.5373 0 0 0 0.40746 1 17040 17040 0.69038 0 1 + 39288 17178 24858 24869 44643 44643 0.10981932825166041 RVHAARRL 8 Unmodified _RVHAARRL_ 0 0 0 REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense REV__AluSx1_dup40544|chr7:5353255-5353581:+|1.0022529948077|0.3654368938689744|1.46|151.0|4|2|sense MSMS UPN48_class_I_Rep_3 7 489.80645751953125 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 78.233 1 81.854 81.354 82.354 3.6216 0 0 0 0.40746 1 18513 18513 0.69038 0 1 + 39289 17178 24858 24869 44644 44644 0.10981932825166041 RVHRCVLS 8 Unmodified _RVHRCVLS_ 0 0 0 REV__THE1B_dup20544|chr17:72700632-72700993:-|1.2102589056797242|0.0249042412449825|5.6|151.0|7|2|sense REV__THE1B_dup20544|chr17:72700632-72700993:-|1.2102589056797242|0.0249042412449825|5.6|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 485.2748107910156 2 485.274178 968.533803 NaN NaN NaN NaN NaN NaN NaN 33.717 1 37.377 36.877 37.877 3.6607 0 0 0 0.40746 1 5355 5355 0.69038 0 1 + 39290 32233 24859 24870 44645 44645 0.048277755879666984 RVHRGPRP 8 Unmodified _RVHRGPRP_ 0 0 0 ENST00000378052.5_1_7:148991082-148992133:+|nuORF;ENST00000480864.1_1_7:148991400-148992133:+|nuORF;ENST00000476295.5_1_7:148991497-148992133:+|nuORF;ENST00000481519.5_1_7:148990933-148994165:+|nuORF ENST00000378052.5_1_7:148991082-148992133:+|nuORF ENST00000378052.5_1_7:148991082-148992133:+|nuORF MSMS UPN48_class_I_Rep_3 7 487.79290771484375 2 487.791384 973.568215 NaN NaN NaN NaN NaN NaN NaN 74.638 1 78.188 77.688 78.688 3.5505 0 0 0 0.40625 1 17493 17493 2.3027 0.24298 1 39291 6467 24860 24871 44646 44646 0.0803735979108069 RVHRRRRG 8 Unmodified _RVHRRRRG_ 0 0 0 REV__ENST00000243878.8_1_16:67700286-67700655:-|nuORF REV__ENST00000243878.8_1_16:67700286-67700655:-|nuORF MSMS UPN48_class_I_Rep_1 5 546.8397216796875 2 546.839731 1091.66491 NaN NaN NaN NaN NaN NaN NaN 94.488 1 98.109 97.609 98.609 3.6208 0 0 0 0.40798 1 22739 22739 0 0 1 + 39292 21511 24861 24872 44647 44647 0.12274347070865588 RVHVHIVRV 9 Unmodified _RVHVHIVRV_ 0 0 0 L1PA3_dup2820|chr4:106213355-106219380:+|1.0498892170021834|0.1664069450626405|2.66|151.0|167|1|anti-sense;L1PA2_dup2868|chr9:123903371-123909365:+|1.917284621879933|0.039014055556677|5.62|151.0|230|2|anti-sense L1PA3_dup2820|chr4:106213355-106219380:+|1.0498892170021834|0.1664069450626405|2.66|151.0|167|1|anti-sense L1PA3_dup2820|chr4:106213355-106219380:+|1.0498892170021834|0.1664069450626405|2.66|151.0|167|1|anti-sense MSMS UPN47_class_I_Rep_2 3 557.8513793945312 2 557.851442 1113.68833 NaN NaN NaN NaN NaN NaN NaN 21.956 1 25.38 24.88 25.88 3.4241 0 0 0 0.4007 1 2531 2531 0.52476 0 1 39293 14192 24862 24873 44648 44648 0.13603348064839338 RVICPVRH 8 Unmodified _RVICPVRH_ 0 0 0 ENST00000359890.7_2_14:23370092-23370311:-|nuORF ENST00000359890.7_2_14:23370092-23370311:-|nuORF ENST00000359890.7_2_14:23370092-23370311:-|nuORF MSMS UPN46_class_I_Rep_3 1 490.2858581542969 2 490.284546 978.554539 NaN NaN NaN NaN NaN NaN NaN 55.034 1 55.034 54.534 55.534 0 0 0 0 0.40604 1 11948 11948 2.5775 0 1 39294 6311 24863 24874 44649 44649 0.06440365967637263 RVIEFAAKF 9 Unmodified _RVIEFAAKF_ 0 0 0 ENST00000513226.1_1_4:17812700-17814869:+|nuORF;ENSG00000109805|ENST00000251496|NCAPG ENST00000513226.1_1_4:17812700-17814869:+|nuORF ENST00000513226.1_1_4:17812700-17814869:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 540.813232421875 2 540.813659 1079.61277 0.38002 0.00020552 -0.048519 -2.624E-05 0.3315 0.00017928 540.8135615143252 49.42 0.58292 52.944 52.696 53.279 3.5246 55 38 2 0 0 0 0.11892 1 10011 10011 10.151 3.9448 1 114000 39295 1912 24864 24875 44650 44650 0.07614326093880663 RVIEFAAKF 9 Unmodified _RVIEFAAKF_ 0 0 0 ENST00000513226.1_1_4:17812700-17814869:+|nuORF;ENSG00000109805|ENST00000251496|NCAPG ENST00000513226.1_1_4:17812700-17814869:+|nuORF ENST00000513226.1_1_4:17812700-17814869:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 540.8139038085938 2 540.813659 1079.61277 0.41258 0.00022313 -0.12421 -6.7174E-05 0.28837 0.00015596 540.813760487 49.286 0.63991 53.004 52.655 53.295 3.7175 57 43 2 0 0 0 0.45441 1 9922 9922 4.897 0.56777 1 97346 39296 1912 24864 24875 44651 44651 0.07614326093880663 RVIEFAAKF 9 Unmodified _RVIEFAAKF_ 0 0 0 ENST00000513226.1_1_4:17812700-17814869:+|nuORF;ENSG00000109805|ENST00000251496|NCAPG ENST00000513226.1_1_4:17812700-17814869:+|nuORF ENST00000513226.1_1_4:17812700-17814869:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 540.813720703125 2 540.813659 1079.61277 0.44122 0.00023862 0.14866 8.0397E-05 0.58988 0.00031901 540.8136828373949 49.391 0.66677 53.02 52.612 53.279 3.6291 54 47 2 0 0 0 0.39745 2 9893 9893;9935 8.1555 0.24537 1 139720 39297 1912 24864 24875 44652;44653 44652 0.07614326093880663 RVIGTAVAR 9 Unmodified _RVIGTAVAR_ 0 0 0 nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2 nc|ENSG00000160293|P52735-3|VAV2 nc|ENSG00000160293|P52735-3|VAV2 MSMS UPN47_class_I_Rep_2 3 471.7955322265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 41.907 1 45.272 44.772 45.772 3.3652 0 0 0 0.39518 1 8492 8492 1.8442 1.0506 1 39298 3866 24865 24876 44654 44654 0.10392288636899139 RVIGTLEEV 9 Unmodified _RVIGTLEEV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS UPN47_class_I_Rep_1 2 508.29248046875 2 508.292756 1014.57096 -0.052478 -2.6674E-05 0.073526 3.7373E-05 0.021048 1.0698E-05 508.2926418692445 45.195 1.0975 48.894 48.522 49.62 3.6999 124 62 3 0 0 0 0.038999 3 9469 9427;9469;9514 53.404 11.448 1 181660 39299 1503 24866 24877 44655;44656;44657 44656 0.06425725614724342 RVIGTLEEV 9 Unmodified _RVIGTLEEV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS UPN47_class_I_Rep_2 3 508.2922668457031 2 508.292756 1014.57096 -0.05289 -2.6884E-05 -0.038253 -1.9444E-05 -0.091143 -4.6328E-05 508.2926355811127 45.584 0.99668 48.937 48.614 49.611 3.3535 112 63 2 0 0 0 0.05757 3 9639 9595;9639;9679 45.74 10.808 1 183520 39300 1503 24866 24877 44658;44659;44660 44659 0.06425725614724342 RVIGTLEEV 9 Unmodified _RVIGTLEEV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 508.2926025390625 2 508.292756 1014.57096 0.078041 3.9667E-05 -0.3005 -0.00015274 -0.22245 -0.00011307 508.29252156704774 45.758 0.94393 49.002 48.651 49.595 3.2441 95 55 2 0 0 0 0.053261 3 9734 9688;9734;9778 47.594 11.088 1 187090 39301 1503 24866 24877 44661;44662;44663 44662 0.06425725614724342 RVIIHRPTPRR 11 Unmodified _RVIIHRPTPRR_ 0 0 0 REV__L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|16|1|sense REV__L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|16|1|sense MSMS UPN48_class_I_Rep_2 6 467.6302795410156 3 467.628499 1399.86367 NaN NaN NaN NaN NaN NaN NaN 85.951 1 89.657 89.157 90.157 3.7058 0 0 0 0.38417 1 20459 20459 0.92553 0.41958 1 + 39302 29566 24867 24878 44664 44664 0.17973142859045765 RVIIHRPTPRR 11 Unmodified _RVIIHRPTPRR_ 0 0 0 REV__L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|16|1|sense REV__L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 467.62982177734375 3 467.628499 1399.86367 NaN NaN NaN NaN NaN NaN NaN 89.551 1 93.38 92.88 93.88 3.8293 0 0 0 0.38417 1 21261 21261 1.1098 0.41209 1 + 39303 29566 24867 24878 44665 44665 0.17973142859045765 RVIIRMARHS 10 Unmodified _RVIIRMARHS_ 0 0 0 L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|45|3|sense L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|45|3|sense L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|45|3|sense MSMS UPN48_class_I_Rep_3 7 619.8690185546875 2 619.866766 1237.71898 NaN NaN NaN NaN NaN NaN NaN 89.492 1 93.321 92.821 93.821 3.8293 0 0 0 0.53105 1 21246 21246 1.3295 0.80477 1 39304 12743 24868 24879 44666 44666 0.10962758387586291 RVIKQKTT 8 Unmodified _RVIKQKTT_ 0 0 0 REV__L1MC5a_dup11710|chr11:130311509-130312977:+|2.121408796576601|0.0176226304409496|6.91|151.0|38|3|sense REV__L1MC5a_dup11710|chr11:130311509-130312977:+|2.121408796576601|0.0176226304409496|6.91|151.0|38|3|sense MSMS UPN46_class_I_Rep_3 1 487.3116760253906 2 487.311284 972.608014 NaN NaN NaN NaN NaN NaN NaN 73.714 1 73.714 73.214 74.214 0 0 0 0 0.40746 1 17098 17098 0.69038 0 1 + 39305 27112 24869 24880 44667 44667 0.12061441951118468 RVIKQNAYK 9 Unmodified _RVIKQNAYK_ 0 0 0 REV__L1MCa_dup1441|chr3:149939899-149940670:-|1.159454740271526|0.0235769204999667|5.62|151.0|17|2|sense REV__L1MCa_dup1441|chr3:149939899-149940670:-|1.159454740271526|0.0235769204999667|5.62|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3173217773438 2 560.33529 1118.65603 0.43702 0.00024488 -0.19608 -0.00010987 0.24094 0.00013501 560.3352161873804 41.04 0.53256 44.791 44.477 45.009 3.7508 67 52 2 0 0 0 0.48643 1 7388 7388 2.0598 0 1 134280 + 39306 27184 24870 24881 44668 44668 0.10144515871161275 RVIMAKKL 8 Unmodified _RVIMAKKL_ 0 0 0 REV__ENST00000489824.1_1_17:57971183-58007752:+|nuORF REV__ENST00000489824.1_1_17:57971183-58007752:+|nuORF MSMS UPN47_class_I_Rep_2 3 479.8002624511719 2 479.815147 957.615742 NaN NaN NaN NaN NaN NaN NaN 15.234 1 18.62 18.12 19.12 3.3864 0 0 0 0.40625 1 765 765 2.3027 0 1 + 39307 18381 24871 24882 44669 44669 0.13523877947056917 RVIQKALEF 9 Unmodified _RVIQKALEF_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MSMS UPN48_class_I_Rep_1 5 552.332275390625 2 552.332216 1102.64988 NaN NaN NaN NaN NaN NaN NaN 42.933 1 46.443 45.943 46.943 3.5103 0 0 0 0.39518 1 8000 8000 1.8442 1.1539 1 39308 2857 24872 24883 44670 44670 0.10265997639658053 RVIQKALEF 9 Unmodified _RVIQKALEF_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MSMS UPN48_class_I_Rep_2 6 552.3333129882812 2 552.332216 1102.64988 NaN NaN NaN NaN NaN NaN NaN 42.634 1 46.391 45.891 46.891 3.7579 0 0 0 0.39518 1 7916 7916 1.8442 1.1539 1 39309 2857 24872 24883 44671 44671 0.10265997639658053 RVISGVLQL 9 Unmodified _RVISGVLQL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN48_class_I_Rep_1 5 492.8136291503906 2 492.813659 983.612765 0.26828 0.00013221 0.0073735 3.6337E-06 0.27566 0.00013585 492.81359570111664 57.515 1.1328 61.01 60.558 61.691 3.4942 198 89 3 0 0 0 0.065535 2 12489 12377;12489 42.312 5.8063 1 1621600 39310 1497 24873 24884 44672;44673 44673 0.12030326093906751 RVISGVLQL 9 Unmodified _RVISGVLQL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN48_class_I_Rep_2 6 492.813720703125 2 492.813659 983.612765 0.37459 0.0001846 -0.033197 -1.636E-05 0.34139 0.00016824 492.81357184316687 57.327 0.30033 60.841 60.586 60.886 3.5142 56 24 4 0 0 0 0.023676 1 12392 12392 61.09 20.851 1 902380 39311 1497 24873 24884 44674 44674 0.12030326093906751 RVISGVLQL 9 Unmodified _RVISGVLQL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN48_class_I_Rep_2 6 492.8137512207031 2 492.813659 983.612765 0.37123 0.00018295 -0.12421 -6.1214E-05 0.24701 0.00012173 492.8135258391344 57.626 0.76826 61.14 60.869 61.638 3.5142 130 55 3 0 0 0 0.039218 1 12468 12468 53.317 17.273 1 1326800 39312 1497 24873 24884 44675 44675 0.12030326093906751 RVISGVLQL 9 Unmodified _RVISGVLQL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN48_class_I_Rep_3 7 492.813720703125 2 492.813659 983.612765 0.1683 8.2938E-05 0.1082 5.3322E-05 0.27649 0.00013626 492.8136279319391 57.454 0.98745 60.986 60.445 61.432 3.5317 218 86 3 0 0 0 0.039218 4 12312 12248;12312;12386;12423 53.317 11.477 1 1177700 39313 1497 24873 24884 44676;44677;44678;44679 44677 0.12030326093906751 RVITALVER 9 Unmodified _RVITALVER_ 0 0 0 ENSG00000138160.7,KIF11,chr10,+,I24.1,92650518,92653664|72|6.36|7|intron;ENSG00000138160.7,KIF11,chr10,+,I24.1,92650518,92653664|72|6.36|2|intron;ENSG00000138160|ENST00000260731|KIF11 ENSG00000138160.7,KIF11,chr10,+,I24.1,92650518,92653664|72|6.36|7|intron ENSG00000138160.7,KIF11,chr10,+,I24.1,92650518,92653664|72|6.36|7|intron MULTI-MSMS UPN46_class_I_Rep_3 1 528.830078125 2 528.82984 1055.64513 0.32 0.00016922 -0.2087 -0.00011037 0.1113 5.8858E-05 528.8297458914127 42.081 0.60426 42.081 41.911 42.515 0 96 69 2 0 0 0 0.17979 1 8307 8307 22.658 3.2961 1 327070 39314 3069 24874 24885 44680 44680 0.11953113496883816 RVIYTFKIQ 9 Unmodified _RVIYTFKIQ_ 0 0 0 L1MB3_dup6581|chr7:40011359-40012318:+|1.1984301650208942|0.031867095895947|5.23|151.0|37|1|anti-sense L1MB3_dup6581|chr7:40011359-40012318:+|1.1984301650208942|0.031867095895947|5.23|151.0|37|1|anti-sense L1MB3_dup6581|chr7:40011359-40012318:+|1.1984301650208942|0.031867095895947|5.23|151.0|37|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3485107421875 2 584.347866 1166.68118 0.30033 0.0001755 0.26036 0.00015214 0.56069 0.00032764 584.3479328889381 31.596 0.10587 31.596 31.526 31.632 0 17 6 3 0 0 0 0.50088 1 5287 5287 0.52476 0 1 1274200 39315 10441 24875 24886 44681 44681 0.10450570673765469 RVIYTFKIQ 9 Unmodified _RVIYTFKIQ_ 0 0 0 L1MB3_dup6581|chr7:40011359-40012318:+|1.1984301650208942|0.031867095895947|5.23|151.0|37|1|anti-sense L1MB3_dup6581|chr7:40011359-40012318:+|1.1984301650208942|0.031867095895947|5.23|151.0|37|1|anti-sense L1MB3_dup6581|chr7:40011359-40012318:+|1.1984301650208942|0.031867095895947|5.23|151.0|37|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 584.3480834960938 2 584.347866 1166.68118 0.18555 0.00010843 0.24972 0.00014593 0.43527 0.00025435 584.3478822303925 26.402 0.074932 26.402 26.374 26.449 0 12 6 2 0 0 0 0.12532 1 3775 3775 0.52476 0 1 127430 39316 10441 24875 24886 44682 44682 0.10450570673765469 RVKAKKKK 8 Unmodified _RVKAKKKK_ 0 0 0 ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL MULTI-MSMS UPN47_class_I_Rep_2 3 493.3534851074219 2 493.353286 984.692019 0.46771 0.00023074 0.11274 5.5622E-05 0.58045 0.00028637 493.35323466487887 108.26 0.47075 111.79 111.44 111.91 3.5333 106 51 3 0 0 0 0.82752 1 26229 26229 2.3027 1.6124 1 23015000 39317 5272 24876 24887 44683 44683 0.1990601783869579 RVKEKADAL 9 Unmodified _RVKEKADAL_ 0 0 0 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS UPN47_class_I_Rep_2 3 515.3062744140625 2 515.306198 1028.59784 -0.30243 -0.00015584 0.19314 9.9525E-05 -0.10929 -5.632E-05 515.3061862603766 14.397 0.2336 17.784 17.683 17.917 3.3871 43 29 2 0 0 0 0.47763 1 568 568 2.9952 0.26005 1 35627 39318 2525 24877 24888 44684 44684 0.08468834225891442 RVKKFKKFIK 10 Unmodified _RVKKFKKFIK_ 0 0 0 Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense Tigger3b_dup2482|chr6:53339520-53340825:+|1.1236514453960715|0.0606107707353173|4.21|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 441.2972717285156 3 441.299209 1320.8758 NaN NaN NaN NaN NaN NaN NaN 56.777 1 60.078 59.578 60.578 3.3009 0 0 0 0.53105 1 13024 13024 0.13989 0 1 39319 33377 24878 24889 44685 44685 0.22819366549538245 RVKKIVKV 8 Unmodified _RVKKIVKV_ 0 0 0 REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 485.2619934082031 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 49.169 1 49.169 48.669 49.669 0 0 0 0 0.40746 1 10303 10303 0.69038 0 1 + 39320 27258 24879 24890 44686 44686 0.2002749960716983 RVKKIVKV 8 Unmodified _RVKKIVKV_ 0 0 0 REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 485.3489074707031 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 54.311 1 54.311 53.811 54.811 0 0 0 0 0.40746 1 11748 11748 0.69038 0 1 + 39321 27258 24879 24890 44687 44687 0.2002749960716983 RVKKIVKV 8 Unmodified _RVKKIVKV_ 0 0 0 REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 485.30853271484375 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 66.333 1 66.333 65.833 66.833 0 0 0 0 0.40746 1 15044 15044 0.69038 0 1 + 39322 27258 24879 24890 44688 44688 0.2002749960716983 RVKKIVKV 8 Unmodified _RVKKIVKV_ 0 0 0 REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 485.1817321777344 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 72.068 1 72.068 71.568 72.568 0 0 0 0 0.40746 1 16637 16637 0.69038 0 1 + 39323 27258 24879 24890 44689 44689 0.2002749960716983 RVKKIVKV 8 Unmodified _RVKKIVKV_ 0 0 0 REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense REV__L1MCc_dup969|chr4:155679726-155680498:-|1.1045649980709562|0.0160816335908221|6.1|142.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 485.34906005859375 2 485.350212 968.68587 NaN NaN NaN NaN NaN NaN NaN 72.785 1 72.785 72.285 73.285 0 0 0 0 0.40746 1 16841 16841 0.69038 0 1 + 39324 27258 24879 24890 44690 44690 0.2002749960716983 RVKKSKQP 8 Unmodified _RVKKSKQP_ 0 0 0 nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 MSMS UPN47_class_I_Rep_2 3 485.8115539550781 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 62.695 1 65.951 65.451 66.451 3.2558 0 0 0 0.40746 1 14823 14823 0.69038 0 1 39325 5207 24880 24891 44691 44691 0.12232861670997863 RVKLLLKK 8 Unmodified _RVKLLLKK_ 0 0 0 AluSq_dup15722|chr17:29275024-29275323:-|1.180821861959687|0.0444552161041699|4.73|151.0|3|1|sense AluSq_dup15722|chr17:29275024-29275323:-|1.180821861959687|0.0444552161041699|4.73|151.0|3|1|sense AluSq_dup15722|chr17:29275024-29275323:-|1.180821861959687|0.0444552161041699|4.73|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 499.36700439453125 2 499.365862 996.717171 NaN NaN NaN NaN NaN NaN NaN 116.68 1 116.68 116.18 117.18 0 0 0 0 0.40798 1 28893 28893 0 0 1 39326 241 24881 24892 44692 44692 0.21868072641291292 RVKLLLKK 8 Unmodified _RVKLLLKK_ 0 0 0 AluSq_dup15722|chr17:29275024-29275323:-|1.180821861959687|0.0444552161041699|4.73|151.0|3|1|sense AluSq_dup15722|chr17:29275024-29275323:-|1.180821861959687|0.0444552161041699|4.73|151.0|3|1|sense AluSq_dup15722|chr17:29275024-29275323:-|1.180821861959687|0.0444552161041699|4.73|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 498.7375793457031 2 499.365862 996.717171 0.26876 0.00013421 1.4915 0.00074482 1.7603 0.00087903 499.36604368778376 62.465 0.070488 65.975 65.946 66.016 3.5104 5 4 2 0 0 0 0.72333 1 13878 13878 0 0 1 32202 39327 241 24881 24892 44693 44693 0.21868072641291292 RVKQWVYLRQR 11 Unmodified _RVKQWVYLRQR_ 0 0 0 REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|2|1|sense REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 510.63458251953125 3 511.303793 1530.88955 0.3213 0.00016428 -0.11401 -5.8293E-05 0.20729 0.00010599 511.3032265304459 97.4 0.2476 101.18 101.16 101.41 3.779 40 34 2 0 0 0 22.551 1 23176 23176 0.45452 0.35968 1 196830 + 39328 24797 24882 24893 44694 44694 0.14533992310680333 RVKREQKKQT 10 Unmodified _RVKREQKKQT_ 0 0 0 REV__ENST00000530645.1_1_11:111866135-111866902:+|nuORF REV__ENST00000530645.1_1_11:111866135-111866902:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 434.2855224609375 3 434.265115 1299.77352 -0.061189 -2.6572E-05 2.1838 0.00094835 2.1226 0.00092178 434.2659363198736 107.9 0.15521 111.53 111.46 111.61 3.6313 17 11 2 0 0 0 0.84575 1 26015 26015 2.086 0.17963 1 1261200 + 39329 19641 24883 24894 44695 44695 0.13562048739981947 RVKREQKKQT 10 Unmodified _RVKREQKKQT_ 0 0 0 REV__ENST00000530645.1_1_11:111866135-111866902:+|nuORF REV__ENST00000530645.1_1_11:111866135-111866902:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 434.265115 1299.77352 0.14359 6.2357E-05 2.2176 0.00096303 2.3612 0.0010254 434.60020661083325 107.86 0.07663 111.52 111.49 111.56 3.6563 -0.0053297 3.5323E-05 NaN 2.086 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 609220 + 39330 19641 24883 24894 0.13562048739981947 RVKRLEGL 8 Unmodified _RVKRLEGL_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2-5|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2-5|LOXHD1 MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.227 1 60.395 59.895 60.895 3.1681 0 0 0 0.39624 1 13209 13209 9.3474 0 1 + 39331 20211 24884 24895 44696 44696 0.12232861670997863 RVKRLEGL 8 Unmodified _RVKRLEGL_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2-5|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2-5|LOXHD1 MSMS UPN47_class_I_Rep_3 4 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.348 1 60.517 60.017 61.017 3.1681 0 0 0 0.39624 1 13246 13246 9.3474 0 1 + 39332 20211 24884 24895 44697 44697 0.12232861670997863 RVKRNEQG 8 Unmodified _RVKRNEQG_ 0 0 0 L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|81|2|sense REV__ENST00000465826.5_1_3:12628841-12633220:-|nuORF REV__ENST00000465826.5_1_3:12628841-12633220:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 494.3073425292969 2 493.778139 985.541725 0.026279 1.2976E-05 1.2014 0.00059323 1.2277 0.00060621 493.7789558733614 50.519 0.3073 54.148 54.051 54.359 3.6285 13 11 2 0 0 0 0.72333 1 11127 11127 2.0598 0.21551 1 35679 39333 14666 24885 24896 44698 44698 0.048376261090993466 RVKRPALLGLD 11 Unmodified _RVKRPALLGLD_ 0 0 0 REV__MLT1C_dup13328|chr12:11862382-11862820:-|2.8166842294570538|0.0323562055515736|6.44|151.0|12|3|sense REV__MLT1C_dup13328|chr12:11862382-11862820:-|2.8166842294570538|0.0323562055515736|6.44|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 619.389892578125 2 619.390596 1236.76664 NaN NaN NaN NaN NaN NaN NaN 79.929 1 79.929 79.429 80.429 0 0 0 0 0.38417 1 18803 18803 1.3295 0.13619 1 + 39334 31633 24886 24897 44699 44699 0.15772735859422937 RVKVKGLDP 9 Unmodified _RVKVKGLDP_ 0 0 0 nc|ENSG00000122145|Q9Y458-2|TBX22;ENSG00000122145|ENST00000373296|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 MSMS UPN46_class_I_Rep_3 1 506.3168029785156 2 506.319109 1010.62366 NaN NaN NaN NaN NaN NaN NaN 54.028 1 54.028 53.528 54.528 0 0 0 0 0.39518 1 11669 11669 1.8442 1.0506 1 39335 2377 24887 24898 44700 44700 0.11877728468175519 RVKYKRYMPL 10 Unmodified _RVKYKRYMPL_ 0 0 0 REV__L1MC5a_dup11956|chr12:45864240-45865165:-|1.9669813061311925|0.0228925935205294|6.42|151.0|24|2|sense REV__L1MC5a_dup11956|chr12:45864240-45865165:-|1.9669813061311925|0.0228925935205294|6.42|151.0|24|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 451.93255615234375 3 451.932309 1352.7751 0.15588 7.0447E-05 0.84121 0.00038017 0.99709 0.00045062 452.26697070273224 91.761 0.30007 95.524 95.444 95.744 3.7629 63 41 3 0 0 0 0.56296 1 21843 21843 1.7423 0 1 517790 + 39336 27114 24888 24899 44701 44701 0.112819665043844 RVLAHHSFFF 10 Unmodified _RVLAHHSFFF_ 0 0 0 REV__L1MEc_dup13698|chr12:70289061-70289721:-|1.0946046934659066|0.0105425055371071|6.7|151.0|45|2|anti-sense REV__L1MEc_dup13698|chr12:70289061-70289721:-|1.0946046934659066|0.0105425055371071|6.7|151.0|45|2|anti-sense MSMS UPN46_class_I_Rep_3 1 420.8945617675781 3 420.89273 1259.65636 NaN NaN NaN NaN NaN NaN NaN 95.44 1 95.44 94.94 95.94 0 0 0 0 0.53105 1 23172 23172 1.7423 0.78 1 + 39337 28370 24889 24900 44702 44702 0.03691935591041329 RVLALSIPM 9 Unmodified _RVLALSIPM_ 0 0 0 REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF REV__ENST00000569795.5_1_15:72559856-72559907:-|nuORF MSMS UPN48_class_I_Rep_1 5 500.3050537109375 2 500.304613 998.594672 NaN NaN NaN NaN NaN NaN NaN 57.827 1 61.321 60.821 61.821 3.4942 0 0 0 0.39598 1 12562 12562 1.6526 0 1 + 39338 23082 24890 24901 44703 44703 0.09531867847556441 RVLESRVV 8 Unmodified _RVLESRVV_ 0 0 0 REV__ENSG00000139988|ENST00000551171|RDH12 REV__ENSG00000139988|ENST00000551171|RDH12 MSMS UPN48_class_I_Rep_2 6 479.2964172363281 2 479.295633 956.576714 NaN NaN NaN NaN NaN NaN NaN 33.978 1 37.639 37.139 38.139 3.6607 0 0 0 0.40659 1 5424 5424 1.8442 1.1539 1 + 39339 19326 24891 24902 44704 44704 0.09668868917049167 RVLFFSTK 8 Unmodified _RVLFFSTK_ 0 0 0 REV__ENSG00000123064|ENST00000306014|DDX54 REV__ENSG00000123064|ENST00000306014|DDX54 MSMS UPN48_class_I_Rep_1 5 499.29296875 2 499.295102 996.575651 NaN NaN NaN NaN NaN NaN NaN 89.112 1 92.735 92.235 93.235 3.6229 0 0 0 0.40472 1 21387 21387 4.3292 2.0265 1 + 39340 18770 24892 24903 44705 44705 0.07722654548126684 RVLFRLWY 8 Unmodified _RVLFRLWY_ 0 0 0 REV__L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|150|3|anti-sense REV__L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_1 5 576.8353881835938 2 576.837468 1151.66038 NaN NaN NaN NaN NaN NaN NaN 42.067 1 45.575 45.075 46.075 3.5079 0 0 0 0.40625 1 7739 7739 2.3027 0.4585 1 + 39341 27597 24893 24904 44706 44706 0.09062025084745073 RVLIVRNR 8 Unmodified _RVLIVRNR_ 0 0 0 ENST00000577760.1_1_17:37009503-37009626:-|nuORF ENST00000577760.1_1_17:37009503-37009626:-|nuORF ENST00000577760.1_1_17:37009503-37009626:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.3364868164062 2 513.338167 1024.66178 NaN NaN NaN NaN NaN NaN NaN 43.846 1 43.846 43.346 44.346 0 0 0 0 0.40625 1 8787 8787 2.3027 0 1 39342 7535 24894 24905 44707 44707 0.15043659173511514 RVLKAWVV 8 Unmodified _RVLKAWVV_ 0 0 0 nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-3|TBCK MSMS UPN47_class_I_Rep_3 4 485.812255859375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 78.101 1 81.383 80.883 81.883 3.2816 0 0 0 0.40738 1 19466 19466 0.79363 0 1 39343 3392 24895 24906 44708 44708 0.12634951164693575 RVLKAWVV 8 Unmodified _RVLKAWVV_ 0 0 0 nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-3|TBCK MSMS UPN47_class_I_Rep_3 4 486.29254150390625 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 78.18 1 81.462 80.962 81.962 3.2816 0 0 0 0.40738 1 19487 19487 0.79363 0 1 39344 3392 24895 24906 44709 44709 0.12634951164693575 RVLKAWVV 8 Unmodified _RVLKAWVV_ 0 0 0 nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-3|TBCK MSMS UPN47_class_I_Rep_3 4 485.7820129394531 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 78.207 1 81.489 80.989 81.989 3.2816 0 0 0 0.40738 1 19496 19496 0.79363 0 1 39345 3392 24895 24906 44710 44710 0.12634951164693575 RVLKKFIMV 9 Unmodified _RVLKKFIMV_ 0 0 0 L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|86|3|anti-sense;L1MB7_dup19949|chr17:45527126-45528294:+|1.3751843417128908|0.0710448626903553|4.27|151.0|87|3|anti-sense L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|86|3|anti-sense L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|86|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 567.8289794921875 2 567.365004 1132.71546 0.087096 4.9415E-05 -1.2685 -0.00071971 -1.1814 -0.0006703 567.3645038724741 44.966 0.065964 48.666 48.627 48.693 3.6999 5 3 2 0 0 0 0.12551 1 9394 9394 0 0 1 31414 39346 10780 24896 24907 44711 44711 0.1544069556098293 RVLKVRYY 8 Unmodified _RVLKVRYY_ 0 0 0 L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|187|1|anti-sense L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|187|1|anti-sense L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|187|1|anti-sense MSMS UPN46_class_I_Rep_3 1 548.8355712890625 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 29.571 1 29.571 29.071 30.071 0 0 0 0 0.40746 1 4701 4701 0.69038 0.088878 1 39347 10881 24897 24908 44712 44712 0.11129721222141598 RVLLHFVF 8 Unmodified _RVLLHFVF_ 0 0 0 REV__L1PA5_dup2597|chr4:37938537-37942537:-|1.4621979598235575|0.0849168927667193|4.11|151.0|251|3|anti-sense REV__L1PA5_dup2597|chr4:37938537-37942537:-|1.4621979598235575|0.0849168927667193|4.11|151.0|251|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.81103515625 2 515.813462 1029.61237 NaN NaN NaN NaN NaN NaN NaN 54.275 1 57.857 57.357 58.357 3.5817 0 0 0 0.40581 1 11456 11456 2.8892 0 1 + 39348 29741 24898 24909 44713 44713 0.09874951164692902 RVLLPALSR 9 Unmodified _RVLLPALSR_ 0 0 0 ENSG00000204479|ENST00000376098|PRAMEF17 ENSG00000204479|ENST00000376098|PRAMEF17 ENSG00000204479|ENST00000376098|PRAMEF17 MULTI-MSMS UPN46_class_I_Rep_3 1 512.8345336914062 2 512.834926 1023.6553 0.29908 0.00015338 -0.30917 -0.00015856 -0.010096 -5.1774E-06 512.8347082642277 43.665 0.56189 43.665 43.358 43.92 0 90 54 3 0 0 0 0.12795 1 8743 8743 28.495 0 1 257700 39349 5526 24899 24910 44714 44714 0.14441721222124215 RVLLYFPG 8 Unmodified _RVLLYFPG_ 0 0 0 AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|17|1|anti-sense AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|17|1|anti-sense AluJb_dup115569|chr19:17098647-17098957:+|1.1283165732316445|0.0213252839980246|5.73|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_1 2 482.7850341796875 2 482.78437 963.554188 NaN NaN NaN NaN NaN NaN NaN 23.39 1 27.094 26.594 27.594 3.7042 0 0 0 0.40746 1 2883 2883 0.69038 0 1 39350 26 24900 24911 44715 44715 0.07095269519425074 RVLMMAYTF 9 Unmodified _RVLMMAYTF_ 0 0 0 L1MC3_dup9720|chr13:40990873-40991333:+|1.5225624726414555|0.1242610042085891|3.62|151.0|2|1|sense L1MC3_dup9720|chr13:40990873-40991333:+|1.5225624726414555|0.1242610042085891|3.62|151.0|2|1|sense L1MC3_dup9720|chr13:40990873-40991333:+|1.5225624726414555|0.1242610042085891|3.62|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.2899780273438 2 566.288105 1130.56166 0.48362 0.00027387 1.0556 0.00059777 1.5392 0.00087164 566.2887277896856 77.726 0.66319 81.348 81.181 81.845 3.6222 171 67 4 0 0 0 0.074367 2 18464 18464;18518 39.957 39.957 1 1496300 39351 11389 24901 24912 44716;44717 44716 0.0015991773316272884 RVLMMAYTF 9 Unmodified _RVLMMAYTF_ 0 0 0 L1MC3_dup9720|chr13:40990873-40991333:+|1.5225624726414555|0.1242610042085891|3.62|151.0|2|1|sense L1MC3_dup9720|chr13:40990873-40991333:+|1.5225624726414555|0.1242610042085891|3.62|151.0|2|1|sense L1MC3_dup9720|chr13:40990873-40991333:+|1.5225624726414555|0.1242610042085891|3.62|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 566.2884521484375 2 566.288105 1130.56166 0.48657 0.00027554 1.2045 0.00068211 1.6911 0.00095765 566.2888511930153 77.745 0.64905 81.347 81.163 81.812 3.6016 196 70 4 0 0 0 0.051515 1 18440 18440 48.346 48.346 1 946340 39352 11389 24901 24912 44718 44718 0.0015991773316272884 RVLPASLVI 9 Unmodified _RVLPASLVI_ 0 0 0 ENSG00000129696|ENST00000431156|TTI2 ENSG00000129696|ENST00000431156|TTI2 ENSG00000129696|ENST00000431156|TTI2 MULTI-MSMS UPN48_class_I_Rep_1 5 484.3181457519531 2 484.318577 966.622602 0.26723 0.00012943 -0.38416 -0.00018606 -0.11693 -5.6631E-05 484.31834791406527 63.064 0.66769 66.526 66.219 66.886 3.4625 65 43 2 0 0 0 0.43153 1 14117 14117 6.2058 0.47393 1 152730 39353 2631 24902 24913 44719 44719 0.13795514099274442 RVLPASLVI 9 Unmodified _RVLPASLVI_ 0 0 0 ENSG00000129696|ENST00000431156|TTI2 ENSG00000129696|ENST00000431156|TTI2 ENSG00000129696|ENST00000431156|TTI2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 484.318577 966.622602 0.24292 0.00011765 -0.08392 -4.0644E-05 0.159 7.7007E-05 484.3184167894841 62.713 0.59846 66.222 65.919 66.518 3.5094 -0.15202 0.00016623 NaN 6.2058 50 39 2 NaN NaN NaN NaN 0 NaN NaN 0 82873 39354 2631 24902 24913 0.13795514099274442 RVLPKEPELA 10 Unmodified _RVLPKEPELA_ 0 0 0 REV__ENSG00000184227|ENST00000311148|ACOT1 REV__ENSG00000184227|ENST00000311148|ACOT1 MULTI-MSMS UPN47_class_I_Rep_2 3 576.3436889648438 2 576.342781 1150.67101 0.63493 0.00036594 -0.237 -0.00013659 0.39794 0.00022935 576.3423919975356 107.89 0.27065 111.42 111.35 111.62 3.5345 78 32 4 0 0 0 0.56078 1 26160 26160 3.2813 0 1 13481000 + 39355 18678 24903 24914 44720 44720 0.10169962948521061 RVLQFLLFM 9 Unmodified _RVLQFLLFM_ 0 0 0 L1MB7_dup18837|chr16:15080722-15081935:-|1.0996053493960092|0.1711711455672423|2.68|151.0|60|1|anti-sense L1MB7_dup18837|chr16:15080722-15081935:-|1.0996053493960092|0.1711711455672423|2.68|151.0|60|1|anti-sense L1MB7_dup18837|chr16:15080722-15081935:-|1.0996053493960092|0.1711711455672423|2.68|151.0|60|1|anti-sense MSMS UPN46_class_I_Rep_3 1 583.9961547851562 2 583.841362 1165.66817 NaN NaN NaN NaN NaN NaN NaN 87.659 1 87.659 87.159 88.159 0 0 0 0 0.40038 1 21016 21016 0.6015 0 1 39356 10764 24904 24915 44721 44721 0.09196416289978515 RVLQWESL 8 Unmodified _RVLQWESL_ 0 0 0 REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF MSMS UPN48_class_I_Rep_2 6 515.7861328125 2 515.787641 1029.56073 NaN NaN NaN NaN NaN NaN NaN 78.691 1 82.324 81.824 82.824 3.6331 0 0 0 0.40472 1 18667 18667 4.3292 0 1 + 39357 22733 24905 24916 44722 44722 0.04713162680127425 RVLRSSNV 8 Unmodified _RVLRSSNV_ 0 0 0 REV__nc|ENSG00000166881|O14524-2|NEMP1 REV__nc|ENSG00000166881|O14524-2|NEMP1 MULTI-MSMS UPN47_class_I_Rep_2 3 465.7771911621094 2 465.777608 929.540663 0.0059894 2.7897E-06 -0.20331 -9.4697E-05 -0.19732 -9.1907E-05 465.7774230902794 73.041 1.6981 76.338 75.542 77.24 3.2971 202 148 2 0 0 0 0.82752 1 17915 17915 2.0598 0 1 165930 + 39358 20196 24906 24917 44723 44723 0.07307411740180214 RVLSSPFHPT 10 Unmodified _RVLSSPFHPT_ 0 0 0 L1MEg_dup962|chr1:222656301-222657575:-|1.3001610375580042|0.4468750548798843|1.54|151.0|67|2|anti-sense L1MEg_dup962|chr1:222656301-222657575:-|1.3001610375580042|0.4468750548798843|1.54|151.0|67|2|anti-sense L1MEg_dup962|chr1:222656301-222657575:-|1.3001610375580042|0.4468750548798843|1.54|151.0|67|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8131103515625 2 570.811648 1139.60874 0.41508 0.00023693 -0.036813 -2.1013E-05 0.37826 0.00021592 570.8115362692107 42.903 0.69392 46.661 46.276 46.97 3.7579 115 57 3 0 0 0 0.54466 1 7953 7953 6.2058 0.9089 1 312340 39359 13435 24907 24918 44724 44724 0.04452236600195647 RVLVGKIW 8 Unmodified _RVLVGKIW_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS UPN47_class_I_Rep_2 3 485.7567443847656 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 20.327 1 23.734 23.234 24.234 3.4074 0 0 0 0.40746 1 2089 2089 0.69038 0 1 + 39360 17742 24908 24919 44725 44725 0.12634951164693575 RVLVGKIW 8 Unmodified _RVLVGKIW_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS UPN47_class_I_Rep_2 3 485.8119812011719 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 67.237 1 70.501 70.001 71.001 3.2636 0 0 0 0.40746 1 16203 16203 0.69038 0 1 + 39361 17742 24908 24919 44726 44726 0.12634951164693575 RVLWKFQY 8 Unmodified _RVLWKFQY_ 0 0 0 ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000552478.5_1_12:56334750-56337187:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF;ENSG00000065357|ENST00000331886|DGKA ENST00000548047.5_1_12:56333897-56335920:+|nuORF ENST00000548047.5_1_12:56333897-56335920:+|nuORF MSMS UPN46_class_I_Rep_3 1 570.3241577148438 2 570.321651 1138.62875 NaN NaN NaN NaN NaN NaN NaN 50.347 1 50.347 49.847 50.847 0 0 0 0 0.40604 1 10635 10635 2.5775 0.27475 1 39362 1004 24909 24920 44727 44727 0.06498032330796377 RVMEIKKE 8 Unmodified _RVMEIKKE_ 0 0 0 REV__ENSG00000170027|ENST00000307630|YWHAG REV__ENSG00000170027|ENST00000307630|YWHAG MSMS UPN47_class_I_Rep_1 2 516.6671752929688 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 25.577 1 29.327 28.827 29.827 3.7495 0 0 0 0.40625 1 3530 3530 2.3027 0 1 + 39363 20345 24910 24921 44728 44728 0.06522375979557182 RVMGQKKIF 9 Unmodified _RVMGQKKIF_ 0 0 0 L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|31|2|sense L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|31|2|sense L1MEc_dup15370|chr14:101872525-101874024:-|2.835506666573604|0.1286158957903994|4.46|151.0|31|2|sense MSMS UPN47_class_I_Rep_3 4 553.8296508789062 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 79.863 1 83.172 82.672 83.672 3.309 0 0 0 0.39518 1 19983 19983 1.8442 0 1 39364 13033 24911 24922 44729 44729 0.09442361487435846 RVMILNHP 8 Unmodified _RVMILNHP_ 0 0 0 ENSG00000120675|ENST00000379221|DNAJC15 ENSG00000120675|ENST00000379221|DNAJC15 ENSG00000120675|ENST00000379221|DNAJC15 MSMS UPN47_class_I_Rep_2 3 490.7691650390625 2 490.278929 978.543305 NaN NaN NaN NaN NaN NaN NaN 77.053 1 80.385 79.885 80.885 3.3315 0 0 0 0.40746 1 19095 19095 0.69038 0 1 39365 2332 24912 24923 44730 44730 0.05317543873502473 RVMLRTRRP 9 Unmodified _RVMLRTRRP_ 0 0 0 REV__ENSG00000221916|ENST00000408991|C19orf73 REV__ENSG00000221916|ENST00000408991|C19orf73 MULTI-MSMS UPN48_class_I_Rep_3 7 592.8613891601562 2 592.861483 1183.70841 0.51865 0.00030749 0.0067017 3.9732E-06 0.52535 0.00031146 592.8612764824537 108.67 0.66222 112.35 112.18 112.84 3.6751 204 75 4 0 0 0 0.50582 1 25843 25843 0 0 1 67176000 + 39366 21282 24913 24924 44731 44731 0.12390775733160808 RVMWGFEQSC 10 Unmodified _RVMWGFEQSC_ 0 0 0 REV__HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|110|3|sense REV__HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|110|3|sense MSMS UPN48_class_I_Rep_3 7 621.771728515625 2 621.773351 1241.53215 NaN NaN NaN NaN NaN NaN NaN 31.988 1 35.69 35.19 36.19 3.7015 0 0 0 0.53105 1 4804 4804 1.3295 0.13619 1 + 39367 23876 24914 24925 44732 44732 -0.07895646282941016 RVNILFVM 8 Unmodified _RVNILFVM_ 0 0 0 REV__ENSG00000128487.17,SPECC1,chr17,+,I21.1,20247320,20253504|29|6.42|1|intron REV__ENSG00000128487.17,SPECC1,chr17,+,I21.1,20247320,20253504|29|6.42|1|intron MSMS UPN47_class_I_Rep_1 2 496.2514343261719 2 496.291505 990.568457 NaN NaN NaN NaN NaN NaN NaN 33.998 1 37.697 37.197 38.197 3.6983 0 0 0 0.40738 1 6060 6060 0.79363 0 1 + 39368 18897 24915 24926 44733 44733 0.0727959867606387 RVNRQPRV 8 Unmodified _RVNRQPRV_ 0 0 0 L1PA16_dup11213|chr13:50957090-50958641:-|2.562446467315461|0.1374747939350495|4.22|150.0|25|2|sense;L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|25|2|sense;L1PB1_dup6677|chr8:97016880-97023484:+|1.0697020473747896|0.0622545170936207|4.1|151.0|57|1|sense;L1PB2_dup2175|chr12:71764469-71765845:-|1.2031340944566606|0.2562765503255221|2.23|151.0|37|3|sense;L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|9|1|sense L1PA16_dup11213|chr13:50957090-50958641:-|2.562446467315461|0.1374747939350495|4.22|150.0|25|2|sense L1PA16_dup11213|chr13:50957090-50958641:-|2.562446467315461|0.1374747939350495|4.22|150.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 512.8094482421875 2 512.809774 1023.60499 NaN NaN NaN NaN NaN NaN NaN 14.549 1 14.549 14.049 15.049 0 0 0 0 0.40625 1 662 662 2.3027 0.24298 1 39369 14026 24916 24927 44734 44734 0.09413611616992057 RVNVTGIYR 9 Unmodified _RVNVTGIYR_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS UPN46_class_I_Rep_3 1 539.3117065429688 2 539.311815 1076.60908 0.2374 0.00012803 -0.12623 -6.808E-05 0.11117 5.9955E-05 539.311690399167 36.249 0.9645 36.249 35.821 36.785 0 148 78 2 0 0 0 0.04399 5 6693 6618;6657;6693;6731;6769 51.415 7.4535 1 552070 39370 1700 24917 24928 44735;44736;44737;44738;44739 44737 0.07383656320052978 RVNWKNTL 8 Unmodified _RVNWKNTL_ 0 0 0 L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|1|1|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|1|1|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.2948608398438 2 515.793258 1029.57196 -0.0017314 -8.9303E-07 -1.0808 -0.00055745 -1.0825 -0.00055834 516.294628959534 45.566 0.53846 49.266 49.107 49.646 3.6999 44 29 2 0 0 0 0.82752 1 9568 9568 4.3292 0 1 73824 39371 12537 24918 24929 44740 44740 0.05835984774262215 RVNWKNTL 8 Unmodified _RVNWKNTL_ 0 0 0 L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|1|1|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|1|1|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.2957153320312 2 515.793258 1029.57196 0.11524 5.9441E-05 -1.158 -0.00059726 -1.0427 -0.00053782 515.7923234782736 46.103 0.41465 49.347 49.089 49.503 3.2441 38 23 2 0 0 0 0.82752 1 9799 9799 4.3292 0 1 62063 39372 12537 24918 24929 44741 44741 0.05835984774262215 RVPHIIWIHD 10 Unmodified _RVPHIIWIHD_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|76|3|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|76|3|anti-sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|76|3|anti-sense MSMS UPN46_class_I_Rep_3 1 643.3807373046875 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 61.188 1 61.188 60.688 61.688 0 0 0 0 0.53105 1 13604 13604 1.4819 0 1 39373 10720 24919 24930 44742 44742 0.07815893653832973 RVPHQFGF 8 Unmodified _RVPHQFGF_ 0 0 0 REV__ENSG00000183145|ENST00000329553|RIPPLY3 REV__ENSG00000183145|ENST00000329553|RIPPLY3 MSMS UPN48_class_I_Rep_2 6 494.26116943359375 2 494.261594 986.508634 NaN NaN NaN NaN NaN NaN NaN 45.272 1 49.03 48.53 49.53 3.7579 0 0 0 0.39819 1 8720 8720 8.5933 2.2392 1 + 39374 20777 24920 24931 44743 44743 0.014840440570537794 RVPKKKKKKKK 11 Unmodified _RVPKKKKKKKK_ 0 0 0 REV__AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|3|1|sense REV__AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 466.10723876953125 3 466.004796 1394.99256 NaN NaN NaN NaN NaN NaN NaN 52.35 1 52.35 51.85 52.85 0 0 0 0 0.38417 1 11189 11189 0 0 1 + 39375 17157 24921 24932 44744 44744 0.31086104769269696 RVPLFLRM 8 Unmodified _RVPLFLRM_ 0 0 0 L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 516.3146362304688 2 516.312772 1030.61099 0.2478 0.00012794 2.1024 0.0010855 2.3502 0.0012135 516.3136397087161 91.293 0.17241 94.754 94.638 94.811 3.4613 25 23 2 0 0 0 0.72333 1 22588 22588 0.69038 0 1 183530 39376 11438 24922 24933 44745 44745 0.09690993804292702 RVPLFLRM 8 Unmodified _RVPLFLRM_ 0 0 0 L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 516.3142700195312 2 516.312772 1030.61099 NaN NaN NaN NaN NaN NaN NaN 93.916 1 97.692 97.192 98.192 3.7761 0 0 0 0.40746 1 22332 22332 0.69038 0 1 39377 11438 24922 24933 44746 44746 0.09690993804292702 RVPLFLRM 8 Unmodified _RVPLFLRM_ 0 0 0 L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense L1MC4_dup1986|chr2:9530594-9530841:+|1.1496492837065055|0.0106139235089622|6.76|151.0|10|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 516.312772 1030.61099 0.34616 0.00017873 2.1571 0.0011138 2.5033 0.0012925 516.3137889339988 90.96 0.090508 94.716 94.659 94.75 3.7554 -0.040654 -4.8494E-05 NaN 0.69038 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 246780 39378 11438 24922 24933 0.09690993804292702 RVPLMVAG 8 Unmodified _RVPLMVAG_ 0 0 0 HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|168|3|anti-sense HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|168|3|anti-sense HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|168|3|anti-sense MSMS UPN46_class_I_Rep_3 1 421.7510070800781 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 83.084 1 83.084 82.584 83.584 0 0 0 0 0.40364 1 19713 19713 5.7604 0.52976 1 39379 8066 24923 24934 44747 44747 0.057310675791541144 RVPMLRYR 8 Unmodified _RVPMLRYR_ 0 0 0 REV__L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|42|2|sense REV__L1PA7_dup10506|chr12:76362220-76364662:+|1.2452465088933713|0.15808463093996|2.98|151.0|42|2|sense MSMS UPN47_class_I_Rep_1 2 545.9076538085938 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 23.275 1 26.979 26.479 27.479 3.7042 0 0 0 0.40746 1 2850 2850 0.69038 0.088878 1 + 39380 29933 24924 24935 44748 44748 0.0817261054746723 RVPPPPPIA 9 Unmodified _RVPPPPPIA_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;ENST00000457130.2_1_X:143922603-143922738:+|nuORF;ENST00000560385.2_1_15:79528799-79529129:+|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MSMS UPN47_class_I_Rep_1 2 472.2897033691406 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 38.955 1 42.62 42.12 43.12 3.6652 0 0 0 0.2088 1 7565 7565 15.847 7.2539 1 39381 1388 24925 24936 44749 44749 0.09150671893689832 RVPPPPPIA 9 Unmodified _RVPPPPPIA_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;ENST00000457130.2_1_X:143922603-143922738:+|nuORF;ENST00000560385.2_1_15:79528799-79529129:+|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MSMS UPN47_class_I_Rep_3 4 472.2894592285156 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 39.101 1 42.339 41.839 42.839 3.238 0 0 0 0.29868 1 7687 7687 10.824 2.2306 1 39382 1388 24925 24936 44750 44750 0.09150671893689832 RVPPVQLY 8 Unmodified _RVPPVQLY_ 0 0 0 REV__ENST00000573641.1_1_17:2598433-2598937:-|nuORF REV__ENST00000573641.1_1_17:2598433-2598937:-|nuORF MSMS UPN47_class_I_Rep_2 3 486.28741455078125 2 486.287277 970.560001 NaN NaN NaN NaN NaN NaN NaN 46.672 1 50.024 49.524 50.524 3.3515 0 0 0 0.40604 1 9950 9950 2.5775 0 1 + 39383 23100 24926 24937 44751 44751 0.07354368031087688 RVPRALASL 9 Unmodified _RVPRALASL_ 0 0 0 REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.79583740234375 2 491.811451 981.608348 NaN NaN NaN NaN NaN NaN NaN 52.677 1 56.275 55.775 56.775 3.5979 0 0 0 0.39518 1 10902 10902 1.8442 0 1 + 39384 22564 24927 24938 44752 44752 0.11680861670970444 RVPRKCPLRGG 11 Unmodified _RVPRKCPLRGG_ 0 0 0 ENST00000416263.3_1_17:48944138-48944246:+|nuORF ENST00000416263.3_1_17:48944138-48944246:+|nuORF ENST00000416263.3_1_17:48944138-48944246:+|nuORF MSMS UPN48_class_I_Rep_3 7 619.86962890625 2 619.866766 1237.71898 NaN NaN NaN NaN NaN NaN NaN 86.792 1 90.582 90.082 91.082 3.7905 0 0 0 0.38417 1 20597 20597 5.2969 0.76802 1 39385 6648 24928 24939 44753 44753 0.10962758387563554 RVPRSALPP 9 Unmodified _RVPRSALPP_ 0 0 0 REV__SVA_B_dup603|chr14:34475438-34476927:+|2.549988547100311|0.0212758069330603|6.91|151.0|29|3|sense REV__SVA_B_dup603|chr14:34475438-34476927:+|2.549988547100311|0.0212758069330603|6.91|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.8015441894531 2 496.803626 991.592698 0.30731 0.00015267 -1.6379 -0.00081373 -1.3306 -0.00066106 496.80266451206745 107.99 0.56571 107.99 107.9 108.47 0 91 54 3 0 0 0 0.21527 1 26373 26373 19.257 3.4098 1 122390000 + 39386 32187 24929 24940 44754 44754 0.0965657515392877 RVPRSALPP 9 Unmodified _RVPRSALPP_ 0 0 0 REV__SVA_B_dup603|chr14:34475438-34476927:+|2.549988547100311|0.0212758069330603|6.91|151.0|29|3|sense REV__SVA_B_dup603|chr14:34475438-34476927:+|2.549988547100311|0.0212758069330603|6.91|151.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.8039245605469 2 496.803626 991.592698 0.28295 0.00014057 0.34938 0.00017358 0.63233 0.00031415 496.8036898274413 107.81 0.23575 111.48 111.4 111.64 3.6724 42 15 5 0 0 0 0.30034 1 26417 26417 13.906 3.0821 1 79098000 + 39387 32187 24929 24940 44755 44755 0.0965657515392877 RVPRSALPP 9 Unmodified _RVPRSALPP_ 0 0 0 REV__SVA_B_dup603|chr14:34475438-34476927:+|2.549988547100311|0.0212758069330603|6.91|151.0|29|3|sense REV__SVA_B_dup603|chr14:34475438-34476927:+|2.549988547100311|0.0212758069330603|6.91|151.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.8038330078125 2 496.803626 991.592698 0.17732 8.8093E-05 0.25754 0.00012795 0.43486 0.00021604 496.8036980019965 107.81 0.40687 111.44 111.35 111.76 3.6313 96 35 5 0 0 0 0.21527 1 25994 25994 13.906 0 1 157380000 + 39388 32187 24929 24940 44756 44756 0.0965657515392877 RVPVKIKRM 9 Unmodified _RVPVKIKRM_ 0 0 0 nc|ENSG00000120341|Q96JE7-3|SEC16B;ENST00000327037.8_1_1:177899723-177917737:-|nuORF nc|ENSG00000120341|Q96JE7-3|SEC16B nc|ENSG00000120341|Q96JE7-3|SEC16B MSMS UPN47_class_I_Rep_1 2 563.8654174804688 2 563.865703 1125.71685 NaN NaN NaN NaN NaN NaN NaN 81.506 1 84.998 84.498 85.498 3.4922 0 0 0 0.4007 1 20340 20340 0.52476 0 1 39389 6172 24930 24941 44757 44757 0.15902329649748026 RVPVKIKRM 9 Unmodified _RVPVKIKRM_ 0 0 0 nc|ENSG00000120341|Q96JE7-3|SEC16B;ENST00000327037.8_1_1:177899723-177917737:-|nuORF nc|ENSG00000120341|Q96JE7-3|SEC16B nc|ENSG00000120341|Q96JE7-3|SEC16B MSMS UPN47_class_I_Rep_1 2 563.8658447265625 2 563.865703 1125.71685 NaN NaN NaN NaN NaN NaN NaN 82.909 1 86.447 85.947 86.947 3.5386 0 0 0 0.4007 1 20724 20724 0.52476 0.066424 1 39390 6172 24930 24941 44758 44758 0.15902329649748026 RVPVRGIREV 10 Unmodified _RVPVRGIREV_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MSMS UPN46_class_I_Rep_3 1 590.867919921875 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 99.556 1 99.556 99.056 100.06 0 0 0 0 0.53105 1 24257 24257 1.1933 0.66858 1 39391 16850 24931 24942 44759 44759 0.13735296028130506 RVPVRGIREV 10 Unmodified _RVPVRGIREV_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MSMS UPN48_class_I_Rep_3 7 590.8666381835938 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 97.516 1 101.42 100.92 101.92 3.9022 0 0 0 0.53105 1 23113 23113 2.9952 0.93549 1 39392 16850 24931 24942 44760 44760 0.13735296028130506 RVPWMLRNQ 9 Unmodified _RVPWMLRNQ_ 0 0 0 REV__ENST00000344651.4_1_12:121159001-121159205:+|nuORF REV__ENST00000344651.4_1_12:121159001-121159205:+|nuORF MSMS UPN48_class_I_Rep_2 6 600.3242797851562 2 600.326942 1198.63933 NaN NaN NaN NaN NaN NaN NaN 105.99 1 109.67 109.17 110.17 3.6834 0 0 0 0.39518 1 25070 25070 1.8442 0.36234 1 + 39393 21840 24932 24943 44761 44761 0.04795691713593442 RVPYFTLN 8 Unmodified _RVPYFTLN_ 0 0 0 Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|59|3|sense Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|59|3|sense Tigger1_dup2868|chr3:193681537-193683935:+|1.2566918278811534|0.170131932675395|2.88|151.0|59|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 505.2772521972656 2 505.276909 1008.53927 0.35201 0.00017786 -0.12613 -6.3732E-05 0.22587 0.00011413 505.2768520333194 62.936 1.1299 66.41 65.848 66.978 3.4738 264 84 4 0 0 0 0.82752 1 13968 13968 3.5965 0 1 3989800 39394 33066 24933 24944 44762 44762 0.035337776514325014 RVQALPLW 8 Unmodified _RVQALPLW_ 0 0 0 REV__ENST00000378536.4_1_1:2240511-2240694:+|nuORF REV__ENST00000378536.4_1_1:2240511-2240694:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 492.2984313964844 2 491.795269 981.575986 0.25858 0.00012717 1.2257 0.00060277 1.4842 0.00072994 491.795738334399 62.842 0.25869 66.351 66.299 66.558 3.5091 29 18 2 0 0 0 0.82752 1 13999 13999 2.5775 0 1 69552 + 39395 22031 24934 24945 44763 44763 0.08446074267999393 RVQALPLW 8 Unmodified _RVQALPLW_ 0 0 0 REV__ENST00000378536.4_1_1:2240511-2240694:+|nuORF REV__ENST00000378536.4_1_1:2240511-2240694:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 491.795269 981.575986 0.24118 0.00011861 1.0188 0.00050104 1.26 0.00061965 491.7957379457183 66.43 0.022987 66.43 66.413 66.436 0 -0.01559 -0.00038736 NaN 2.5775 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 39949 + 39396 22031 24934 24945 0.08446074267999393 RVQALPLW 8 Unmodified _RVQALPLW_ 0 0 0 REV__ENST00000378536.4_1_1:2240511-2240694:+|nuORF REV__ENST00000378536.4_1_1:2240511-2240694:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 491.795269 981.575986 0.29479 0.00014497 1.4823 0.000729 1.7771 0.00087397 491.7959016623668 63.093 0.55514 66.555 66.239 66.794 3.4625 0.11 6.8565E-05 NaN 2.5775 53 35 2 NaN NaN NaN NaN 0 NaN NaN 0 158480 + 39397 22031 24934 24945 0.08446074267999393 RVQDHYILR 9 Unmodified _RVQDHYILR_ 0 0 0 REV__L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|21|2|sense REV__L1ME4b_dup21550|chr22:19380924-19382112:-|1.9897251405872785|0.1007711208676728|4.3|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 600.335205078125 2 600.335821 1198.65709 NaN NaN NaN NaN NaN NaN NaN 88.64 1 88.64 88.14 89.14 0 0 0 0 0.4007 1 21297 21297 0.52476 0 1 + 39398 28284 24935 24946 44764 44764 0.06570730240082412 RVQEFVLV 8 Unmodified _RVQEFVLV_ 0 0 0 REV__nc|ENSG00000167780|O75908-4|SOAT2 REV__nc|ENSG00000167780|O75908-4|SOAT2 MULTI-MSMS UPN46_class_I_Rep_3 1 495.292724609375 2 495.292559 988.570566 0.25308 0.00012535 0.7922 0.00039237 1.0453 0.00051772 495.29290162605383 68.049 0.43007 68.049 67.763 68.193 0 63 41 2 0 0 0 0.82752 1 15479 15479 21.747 0 1 1787900 + 39399 20239 24936 24947 44765 44765 0.07582350685527217 RVQPKVTVY 9 Unmodified _RVQPKVTVY_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN46_class_I_Rep_3 1 545.32421875 2 545.324391 1088.63423 0.22607 0.00012328 -0.13852 -7.554E-05 0.087552 4.7744E-05 545.3242562597072 34.742 0.48595 34.742 34.5 34.986 0 57 36 2 0 0 0 0.46869 3 6198 6188;6198;6249 3.9444 2.1002 1 78899 39400 5281 24937 24948 44766;44767;44768 44767 0.09345711122614375 RVQPKVTVY 9 Unmodified _RVQPKVTVY_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MSMS UPN46_class_I_Rep_3 1 545.3242797851562 2 545.324391 1088.63423 NaN NaN NaN NaN NaN NaN NaN 34.987 1 34.987 34.487 35.487 0 0 0 0 0.38639 1 6315 6315 3.9444 2.1002 1 39401 5281 24937 24948 44769 44769 0.09345711122614375 RVQRNQRR 8 Unmodified _RVQRNQRR_ 0 0 0 L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|3|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|3|1|sense L1MEc_dup5941|chr5:66087118-66089667:+|6.269676024266747|0.0964493551298128|6.02|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 556.830322265625 2 556.829029 1111.64351 NaN NaN NaN NaN NaN NaN NaN 30.345 1 30.345 29.845 30.845 0 0 0 0 0.4044 1 4928 4928 4.756 0 1 39402 13116 24938 24949 44770 44770 0.09214917251506449 RVQRRRGSGKI 11 Unmodified _RVQRRRGSGKI_ 0 0 0 L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 438.27294921875 3 438.272604 1311.79598 0.15494 6.7908E-05 0.63327 0.00027754 0.78821 0.00034545 438.27268078439937 104.21 0.16907 104.21 104.1 104.27 0 21 16 2 0 0 0 0.60697 1 25424 25424 5.0475 1.4605 1 445160 39403 13798 24939 24950 44771 44771 0.1525569292828095 RVQRRRGSGKI 11 Unmodified _RVQRRRGSGKI_ 0 0 0 L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 438.272604 1311.79598 0.15455 6.7736E-05 0.81237 0.00035604 0.96692 0.00042378 438.27281850429205 100.19 0.83331 103.99 103.62 104.46 3.7942 -0.16952 6.2558E-05 NaN 5.0475 260 112 3 NaN NaN NaN NaN 0 NaN NaN 0 900860 39404 13798 24939 24950 0.1525569292828095 RVQRRRGSGKI 11 Unmodified _RVQRRRGSGKI_ 0 0 0 L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 438.272604 1311.79598 0.11391 4.9925E-05 0.32414 0.00014206 0.43805 0.00019198 438.2724906420372 100.42 0.27975 104.16 104.14 104.42 3.7417 0.0017988 -0.00057938 NaN 5.0475 48 38 2 NaN NaN NaN NaN 0 NaN NaN 0 196320 39405 13798 24939 24950 0.1525569292828095 RVQRRRGSGKI 11 Unmodified _RVQRRRGSGKI_ 0 0 0 L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense L1PA13_dup8134|chr17:29859295-29859842:-|1.6275895628106636|0.0096318681956193|7.4|151.0|15|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 438.272604 1311.79598 0.1432 6.276E-05 0.46642 0.00020442 0.60962 0.00026718 438.27274187116404 100.42 0.14134 104.27 104.24 104.38 3.8537 0.1171 -0.0003923 NaN 5.0475 50 20 3 NaN NaN NaN NaN 0 NaN NaN 0 315020 39406 13798 24939 24950 0.1525569292828095 RVQVVGTYR 9 Unmodified _RVQVVGTYR_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN46_class_I_Rep_3 1 539.311767578125 2 539.311815 1076.60908 0.10913 5.8854E-05 -0.038 -2.0494E-05 0.071128 3.836E-05 539.3117402693862 30.349 1.316 30.349 29.985 31.301 0 196 105 2 0 0 0 8.5747E-06 8 4911 4871;4911;4952;4993;5029;5066;5120;5189 160.69 75.418 1 701240 39407 1997 24940 24951 44772;44773;44774;44775;44776;44777;44778;44779 44773 0.07383656320052978 RVRAINVY 8 Unmodified _RVRAINVY_ 0 0 0 nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK nc|ENSG00000065534|Q15746-9|MYLK nc|ENSG00000065534|Q15746-9|MYLK MSMS UPN47_class_I_Rep_2 3 495.7956848144531 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.016 1 79.337 78.837 79.837 3.3216 0 0 0 0.40746 1 18798 18798 0.69038 0 1 39408 1011 24941 24952 44780 44780 0.0818428863688041 RVRAKELA 8 Unmodified _RVRAKELA_ 0 0 0 REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B MSMS UPN48_class_I_Rep_2 6 471.79595947265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.374 1 70.87 70.37 71.37 3.4964 0 0 0 0.40625 1 15466 15466 2.3027 0 1 + 39409 17988 24942 24953 44781 44781 0.1039228863688777 RVRALQST 8 Unmodified _RVRALQST_ 0 0 0 ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 ENSG00000142675|ENST00000361530|CNKSR1 ENSG00000142675|ENST00000361530|CNKSR1 MSMS UPN48_class_I_Rep_1 5 465.7774353027344 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 84.279 1 87.876 87.376 88.376 3.5973 0 0 0 0.40746 1 20176 20176 0.69038 0 1 39410 3259 24943 24954 44782 44782 0.07307411740168845 RVRCRSRV 8 Unmodified _RVRCRSRV_ 0 0 0 REV__ENST00000485322.1_1_9:99615275-99616540:-|nuORF REV__ENST00000485322.1_1_9:99615275-99616540:-|nuORF MSMS UPN47_class_I_Rep_1 2 516.3040161132812 2 516.303801 1030.59305 NaN NaN NaN NaN NaN NaN NaN 88.136 1 91.792 91.292 92.292 3.6563 0 0 0 0.40746 1 22039 22039 0.69038 0 1 + 39411 22551 24944 24955 44783 44783 0.07897671602154333 RVRDPVGV 8 Unmodified _RVRDPVGV_ 0 0 0 REV__L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|352|3|anti-sense REV__L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|352|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 449.2666015625 2 449.266876 896.519199 0.025651 1.1524E-05 -0.23134 -0.00010393 -0.20569 -9.2409E-05 449.26667238391667 81.227 0.82244 84.789 84.455 85.278 3.5624 164 98 3 0 0 0 0.82752 1 19358 19358 4.3292 0 1 204470 + 39412 29564 24945 24956 44784 44784 0.06680026711478604 RVREAIRVSK 10 Unmodified _RVREAIRVSK_ 0 0 0 ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 MSMS UPN47_class_I_Rep_1 2 405.2540588378906 3 405.254439 1212.74149 NaN NaN NaN NaN NaN NaN NaN 25.84 1 29.602 29.102 30.102 3.7624 0 0 0 0.53105 1 3609 3609 0.12286 0 1 39413 1781 24946 24957 44785 44785 0.14362681056832116 RVRGARGK 8 Unmodified _RVRGARGK_ 0 0 0 REV__ENST00000485081.5_1_1:182847108-182856566:+|nuORF REV__ENST00000485081.5_1_1:182847108-182856566:+|nuORF MSMS UPN48_class_I_Rep_1 5 450.28729248046875 2 450.285934 898.557316 NaN NaN NaN NaN NaN NaN NaN 71.458 1 74.924 74.424 75.424 3.466 0 0 0 0.40746 1 16707 16707 0.69038 0 1 + 39414 19156 24947 24958 44786 44786 0.10397957416807913 RVRGHLYP 8 Unmodified _RVRGHLYP_ 0 0 0 ENSG00000179300|ENST00000321110|RTL3 ENSG00000179300|ENST00000321110|RTL3 ENSG00000179300|ENST00000321110|RTL3 MSMS UPN48_class_I_Rep_2 6 499.60540771484375 2 499.288143 996.561733 NaN NaN NaN NaN NaN NaN NaN 63.674 1 67.149 66.649 67.649 3.4743 0 0 0 0.40738 1 14336 14336 0.79363 0 1 39415 4857 24948 24959 44787 44787 0.06331421839695395 RVRGRAGW 8 Unmodified _RVRGRAGW_ 0 0 0 REV__ENST00000473484.1_1_3:46713038-46716081:-|nuORF REV__ENST00000473484.1_1_3:46713038-46716081:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.2774658203125 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 72.219 1 75.692 75.192 76.192 3.4732 0 0 0 0.40604 1 16936 16936 2.5775 0.27475 1 + 39416 22514 24949 24960 44788 44788 0.06165670899747511 RVRIGFHV 8 Unmodified _RVRIGFHV_ 0 0 0 REV__L1M7_dup2788|chr15:49941215-49941561:+|1.0914084479772417|0.0010537050893227|10.02|151.0|19|2|anti-sense REV__L1M7_dup2788|chr15:49941215-49941561:+|1.0914084479772417|0.0010537050893227|10.02|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_3 7 492.29754638671875 2 492.29851 982.582468 NaN NaN NaN NaN NaN NaN NaN 56.559 1 60.102 59.602 60.602 3.5427 0 0 0 0.40604 1 12092 12092 2.5775 0.27475 1 + 39417 24736 24950 24961 44789 44789 0.09048012219386692 RVRINEKLGL 10 Unmodified _RVRINEKLGL_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MSMS UPN48_class_I_Rep_2 6 599.3742065429688 2 599.374946 1196.73534 NaN NaN NaN NaN NaN NaN NaN 87.904 1 91.632 91.132 92.132 3.7279 0 0 0 0.53105 1 20920 20920 1.4819 0 1 + 39418 19402 24951 24962 44790 44790 0.14484162825328895 RVRKGQVL 8 Unmodified _RVRKGQVL_ 0 0 0 L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|97|1|anti-sense L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|97|1|anti-sense L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|97|1|anti-sense MSMS UPN48_class_I_Rep_3 7 478.31304931640625 2 478.311618 954.608683 NaN NaN NaN NaN NaN NaN NaN 61.305 1 64.818 64.318 65.318 3.5128 0 0 0 0.39819 1 13537 13537 8.5933 1.304 1 39419 11036 24952 24963 44791 44791 0.12956281390847835 RVRKIKLTLRR 11 Unmodified _RVRKIKLTLRR_ 0 0 0 L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|33|2|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|33|2|sense L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|33|2|sense MSMS UPN46_class_I_Rep_3 1 480.3286437988281 3 480.331683 1437.97322 NaN NaN NaN NaN NaN NaN NaN 100.78 1 100.78 100.28 101.28 0 0 0 0 0.38417 1 24574 24574 0.08335 0 1 39420 13145 24953 24964 44792 44792 0.27175148478363553 RVRKPLEE 8 Unmodified _RVRKPLEE_ 0 0 0 REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.8065795898438 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 88.214 1 91.661 91.161 92.161 3.4471 0 0 0 0.40625 1 21938 21938 2.3027 0 1 + 39421 18883 24954 24965 44793 44793 0.08640253945759468 RVRKQWKTK 9 Unmodified _RVRKQWKTK_ 0 0 0 REV__ENST00000304031.7_1_2:20838259-20838331:-|nuORF REV__ENST00000304031.7_1_2:20838259-20838331:-|nuORF MSMS UPN48_class_I_Rep_1 5 615.3961791992188 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 93.12 1 96.744 96.244 97.244 3.624 0 0 0 0.4007 1 22374 22374 0.52476 0 1 + 39422 21680 24955 24966 44794 44794 0.14643288782053787 RVRKRKHH 8 Unmodified _RVRKRKHH_ 0 0 0 ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A MSMS UPN47_class_I_Rep_3 4 558.8502807617188 2 558.852307 1115.69006 NaN NaN NaN NaN NaN NaN NaN 88.743 1 92.136 91.636 92.636 3.3931 0 0 0 0.40746 1 22256 22256 0.69038 0.088878 1 39423 1236 24956 24967 44795 44795 0.1368440187345641 RVRKRKHH 8 Unmodified _RVRKRKHH_ 0 0 0 ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A MSMS UPN48_class_I_Rep_2 6 558.85009765625 2 558.852307 1115.69006 NaN NaN NaN NaN NaN NaN NaN 89.51 1 93.257 92.757 93.757 3.7471 0 0 0 0.40746 1 21330 21330 0.69038 0.16561 1 39424 1236 24956 24967 44796 44796 0.1368440187345641 RVRLFEET 8 Unmodified _RVRLFEET_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MSMS UPN47_class_I_Rep_2 3 525.2911987304688 2 525.290548 1048.56654 NaN NaN NaN NaN NaN NaN NaN 28.528 1 32.027 31.527 32.527 3.4986 0 0 0 0.40746 1 4439 4439 0.69038 0 1 + 39425 18199 24957 24968 44797 44797 0.04420261191808095 RVRLISLLII 10 Unmodified _RVRLISLLII_ 0 0 0 REV__L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|48|1|anti-sense REV__L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_2 6 598.41796875 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 69.545 1 73.067 72.567 73.567 3.5216 0 0 0 0.53105 1 16117 16117 0 0 1 + 39426 27334 24958 24969 44798 44798 0.22799684904293827 RVRLISLLII 10 Unmodified _RVRLISLLII_ 0 0 0 REV__L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|48|1|anti-sense REV__L1MD1_dup3962|chrX:73954124-73955356:+|4.887852218309281|0.4338829509930783|3.49|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_2 6 598.4178466796875 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 69.827 1 73.349 72.849 73.849 3.5216 0 0 0 0.53105 1 16202 16202 0.45834 0 1 + 39427 27334 24958 24969 44799 44799 0.22799684904293827 RVRLMKFV 8 Unmodified _RVRLMKFV_ 0 0 0 REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|43|3|sense REV__L1M4_dup8697|chr8:47743236-47744593:+|1.6629159358219563|0.0722966041533206|4.52|151.0|43|3|sense MSMS UPN47_class_I_Rep_3 4 524.8270874023438 2 524.826047 1047.63754 NaN NaN NaN NaN NaN NaN NaN 91.064 1 94.465 93.965 94.965 3.401 0 0 0 0.40746 1 22794 22794 0.69038 0 1 + 39428 24456 24959 24970 44800 44800 0.11562682695648618 RVRLNSFV 8 Unmodified _RVRLNSFV_ 0 0 0 REV__L1MB7_dup9|chr1:2295377-2296110:-|1.2914463070322515|0.3191616772711105|2.02|151.0|26|1|anti-sense REV__L1MB7_dup9|chr1:2295377-2296110:-|1.2914463070322515|0.3191616772711105|2.02|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.79595947265625 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 78.13 1 81.473 80.973 81.973 3.3428 0 0 0 0.40738 1 19401 19401 0.79363 0 1 + 39429 26325 24960 24971 44801 44801 0.08184288636903148 RVRLPWTR 8 Unmodified _RVRLPWTR_ 0 0 0 ENST00000295321.8_1_2:128281301-128283801:-|nuORF ENST00000295321.8_1_2:128281301-128283801:-|nuORF ENST00000295321.8_1_2:128281301-128283801:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 542.330078125 2 542.330342 1082.64613 0.57245 0.00031045 -1.4045 -0.0007617 -0.83206 -0.00045125 542.3294113758011 58.513 0.33263 62.011 61.903 62.235 3.4987 29 18 2 0 0 0 0.82752 1 12772 12772 0.69038 0 1 117410 39430 6054 24961 24972 44802 44802 0.10811372656439744 RVRLRLKKKKE 11 Unmodified _RVRLRLKKKKE_ 0 0 0 AluSx_dup41289|chr7:5404832-5405131:+|1.774481822896067|0.006085810863097|8.19|150.0|4|1|sense;AluSz_dup68399|chr12:92135530-92135856:+|1.0255612039892743|0.0256085331522046|5.32|151.0|3|1|sense;AluSz_dup974|chr1:16281649-16281999:-|1.0098416474044982|0.0618762864393348|4.03|151.0|16|3|sense AluSx_dup41289|chr7:5404832-5405131:+|1.774481822896067|0.006085810863097|8.19|150.0|4|1|sense AluSx_dup41289|chr7:5404832-5405131:+|1.774481822896067|0.006085810863097|8.19|150.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 485.33197021484375 3 485.331571 1452.97288 NaN NaN NaN NaN NaN NaN NaN 88.912 1 92.586 92.086 93.086 3.6738 0 0 0 0.38417 1 22232 22232 0 0 1 39431 282 24962 24973 44803 44803 0.2645172875854769 RVRLRLKKKKN 11 Unmodified _RVRLRLKKKKN_ 0 0 0 AluSx1_dup50106|chr8:67210773-67211062:+|1.8078887783115092|0.1030329114949746|4.13|151.0|9|2|sense AluSx1_dup50106|chr8:67210773-67211062:+|1.8078887783115092|0.1030329114949746|4.13|151.0|9|2|sense AluSx1_dup50106|chr8:67210773-67211062:+|1.8078887783115092|0.1030329114949746|4.13|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 480.1927795410156 3 480.331683 1437.97322 NaN NaN NaN NaN NaN NaN NaN 97.973 1 97.973 97.473 98.473 0 0 0 0 0.38417 1 23849 23849 0.094841 0.011491 1 39432 321 24963 24974 44804 44804 0.2717514847838629 RVRLVRFCF 9 Unmodified _RVRLVRFCF_ 0 0 0 LTR9B_dup467|chr11:34897477-34898115:+|1.0075908180051814|0.2977379499327938|1.76|150.0|9|2|sense LTR9B_dup467|chr11:34897477-34898115:+|1.0075908180051814|0.2977379499327938|1.76|150.0|9|2|sense LTR9B_dup467|chr11:34897477-34898115:+|1.0075908180051814|0.2977379499327938|1.76|150.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 598.850341796875 2 598.347677 1194.6808 0.56346 0.00033714 1.31 0.00078384 1.8735 0.001121 598.3483283074261 81.062 0.054955 81.062 81.036 81.091 0 6 4 2 0 0 0 0.48846 1 19125 19125 1.8442 1.1539 1 54718 39433 15732 24964 24975 44805 44805 0.0912487247289846 RVRNHLQKKKK 11 Unmodified _RVRNHLQKKKK_ 0 0 0 AluSx_dup58024|chrX:1485139-1485438:-|1.3594171652971068|0.0028910892845366|8.88|151.0|7|2|sense AluSx_dup58024|chrX:1485139-1485438:-|1.3594171652971068|0.0028910892845366|8.88|151.0|7|2|sense AluSx_dup58024|chrX:1485139-1485438:-|1.3594171652971068|0.0028910892845366|8.88|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 478.97454833984375 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 63.032 1 66.494 65.994 66.994 3.4625 0 0 0 0.38417 1 14156 14156 0.08335 0 1 39434 293 24965 24976 44806 44806 0.20593698547554595 RVRNLCQH 8 Unmodified _RVRNLCQH_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MULTI-SECPEP UPN48_class_I_Rep_2 6 513.8052978515625 2 513.274709 1024.53487 0.32966 0.0001692 -0.94775 -0.00048646 -0.6181 -0.00031725 513.2740713861806 88.015 0.38654 91.743 91.576 91.962 3.7279 62 47 2 0 0 0 0.72333 1 20947 20947 5.2307 0 1 155660 39435 3502 24966 24977 44807 44807 0.023579899568630935 RVRNVLSS 8 Unmodified _RVRNVLSS_ 0 0 0 REV__AluJr_dup73666|chr17:78758968-78759117:+|1.0478713933467327|0.0033233698803782|8.3|150.0|1|1|sense REV__AluJr_dup73666|chr17:78758968-78759117:+|1.0478713933467327|0.0033233698803782|8.3|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 465.77752685546875 2 465.777608 929.540663 0.16396 7.637E-05 0.61558 0.00028672 0.77955 0.00036309 465.77787342924944 86.174 1.0032 89.789 88.971 89.974 3.6153 251 125 3 0 0 0 0.82752 3 21456 21394;21456;21491 12.532 0 1 1431500 + 39436 17056 24967 24978 44808;44809;44810 44809 0.07307411740191583 RVRNVLSS 8 Unmodified _RVRNVLSS_ 0 0 0 REV__AluJr_dup73666|chr17:78758968-78759117:+|1.0478713933467327|0.0033233698803782|8.3|150.0|1|1|sense REV__AluJr_dup73666|chr17:78758968-78759117:+|1.0478713933467327|0.0033233698803782|8.3|150.0|1|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 465.7789611816406 2 465.777608 929.540663 0.16396 7.637E-05 0.61558 0.00028672 0.77955 0.00036309 465.77787342924944 86.174 1.0032 89.789 88.971 89.974 3.6153 251 125 3 0 0 0 0.72333 1 21335 21335 7.9102 0 1 1431500 + 39437 17056 24967 24978 44811 44811 0.07307411740191583 RVRPCLKF 8 Unmodified _RVRPCLKF_ 0 0 0 AluJb_dup103394|chr16:68192577-68192876:+|1.416531394965867|0.0781581189590648|4.18|151.0|9|2|sense AluJb_dup103394|chr16:68192577-68192876:+|1.416531394965867|0.0781581189590648|4.18|151.0|9|2|sense AluJb_dup103394|chr16:68192577-68192876:+|1.416531394965867|0.0781581189590648|4.18|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 509.80426025390625 2 509.802571 1017.59059 NaN NaN NaN NaN NaN NaN NaN 76.852 1 80.362 79.862 80.862 3.5102 0 0 0 0.40625 1 18265 18265 2.3027 0.24298 1 39438 7 24968 24979 44812 44812 0.08249823144478796 RVRQYVQL 8 Unmodified _RVRQYVQL_ 0 0 0 ENST00000411683.1_1_11:64645871-64647159:-|nuORF;ENST00000320631.7_1_11:64645871-64646102:-|nuORF;ENST00000359393.6_1_11:64645871-64646596:-|nuORF ENST00000411683.1_1_11:64645871-64647159:-|nuORF ENST00000411683.1_1_11:64645871-64647159:-|nuORF MSMS UPN47_class_I_Rep_3 4 531.3150024414062 2 531.314358 1060.61416 NaN NaN NaN NaN NaN NaN NaN 91.403 1 94.804 94.304 95.304 3.401 0 0 0 0.40625 1 22864 22864 2.3027 0 1 39439 6149 24969 24980 44813 44813 0.08627960182661809 RVRRGWQRV 9 Unmodified _RVRRGWQRV_ 0 0 0 ENST00000579003.1_1_17:56409563-56409842:-|nuORF ENST00000579003.1_1_17:56409563-56409842:-|nuORF ENST00000579003.1_1_17:56409563-56409842:-|nuORF MSMS UPN46_class_I_Rep_3 1 606.863037109375 2 606.862872 1211.71119 NaN NaN NaN NaN NaN NaN NaN 28.652 1 28.652 28.152 29.152 0 0 0 0 0.39518 1 4429 4429 1.8442 0.36234 1 39440 7549 24970 24981 44814 44814 0.11380367182300688 RVRRIFVRR 9 Unmodified _RVRRIFVRR_ 0 0 0 ENST00000483992.5_1_2:27994849-27995155:+|nuORF ENST00000483992.5_1_2:27994849-27995155:+|nuORF ENST00000483992.5_1_2:27994849-27995155:+|nuORF MSMS UPN46_class_I_Rep_3 1 629.41064453125 2 629.409989 1256.80543 NaN NaN NaN NaN NaN NaN NaN 114.79 1 114.79 114.29 115.29 0 0 0 0 0.4029 1 28381 28381 0 0 1 39441 7015 24971 24982 44815 44815 0.1872950600443346 RVRRRRHLF 9 Unmodified _RVRRRRHLF_ 0 0 0 REV__ENSG00000083168|ENST00000265713|KAT6A REV__ENSG00000083168|ENST00000265713|KAT6A MSMS UPN46_class_I_Rep_3 1 648.4055786132812 2 648.405238 1294.79592 NaN NaN NaN NaN NaN NaN NaN 61.164 1 61.164 60.664 61.664 0 0 0 0 0.4007 1 13597 13597 0.52476 0 1 + 39442 17928 24972 24983 44816 44816 0.160317377189358 RVRRSRAGCC 10 Unmodified _RVRRSRAGCC_ 0 0 0 L1PA6_dup4693|chr12:46246033-46248874:+|2.3490020851891598|0.155750175151096|3.91|151.0|34|2|sense L1PA6_dup4693|chr12:46246033-46248874:+|2.3490020851891598|0.155750175151096|3.91|151.0|34|2|sense L1PA6_dup4693|chr12:46246033-46248874:+|2.3490020851891598|0.155750175151096|3.91|151.0|34|2|sense MSMS UPN47_class_I_Rep_2 3 582.3043212890625 2 582.303475 1162.5924 NaN NaN NaN NaN NaN NaN NaN 102.64 1 106.17 105.67 106.67 3.5231 0 0 0 0.53105 1 24979 24979 0 0 1 39443 14642 24973 24984 44817 44817 0.01760508890811252 RVRRTVTKT 9 Unmodified _RVRRTVTKT_ 0 0 0 REV__LTR83_dup499|chr11:48087842-48088549:-|1.6634001843570188|0.0171275429532497|6.6|150.0|10|2|sense REV__LTR83_dup499|chr11:48087842-48088549:-|1.6634001843570188|0.0171275429532497|6.6|150.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 558.8508911132812 2 558.851638 1115.68872 NaN NaN NaN NaN NaN NaN NaN 88.173 1 91.56 91.06 92.06 3.3873 0 0 0 0.4007 1 22113 22113 0.52476 0.066424 1 + 39444 31024 24974 24985 44818 44818 0.13550722994045827 RVRTYNVWF 9 Unmodified _RVRTYNVWF_ 0 0 0 L1PB1_dup5948|chr7:102148740-102149037:-|1.5321427213523886|0.0060803041070473|7.98|151.0|12|1|anti-sense L1PB1_dup5948|chr7:102148740-102149037:-|1.5321427213523886|0.0060803041070473|7.98|151.0|12|1|anti-sense L1PB1_dup5948|chr7:102148740-102149037:-|1.5321427213523886|0.0060803041070473|7.98|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3948364257812 2 620.832914 1239.65128 NaN NaN NaN NaN NaN NaN NaN 77.424 1 81.036 80.536 81.536 3.6116 0 0 0 0.4007 1 18324 18324 0.52476 0 1 39445 15159 24975 24986 44819 44819 0.041036317283897006 RVRVHMKH 8 Unmodified _RVRVHMKH_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|5|1|sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|5|1|sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 531.3197631835938 2 531.808719 1061.60289 NaN NaN NaN NaN NaN NaN NaN 100.87 1 100.87 100.37 101.37 0 0 0 0 0.40798 1 24600 24600 0 0 1 39446 11430 24976 24987 44820 44820 0.07454859607537401 RVRVKGGG 8 Unmodified _RVRVKGGG_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MSMS UPN48_class_I_Rep_1 5 414.76171875 2 414.761761 827.508969 NaN NaN NaN NaN NaN NaN NaN 108.21 1 111.84 111.34 112.34 3.6313 0 0 0 0.40746 1 26165 26165 0.69038 0 1 39447 1719 24977 24988 44821 44821 0.08831463776914461 RVRWAGRG 8 Unmodified _RVRWAGRG_ 0 0 0 REV__MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|11|2|sense REV__MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 479.2773742675781 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 74.212 1 77.702 77.202 78.202 3.49 0 0 0 0.40625 1 17531 17531 2.3027 0 1 + 39448 31764 24978 24989 44822 44822 0.061656708997588794 RVRWAGRG 8 Unmodified _RVRWAGRG_ 0 0 0 REV__MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|11|2|sense REV__MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.2776794433594 2 479.278109 956.541666 0.26784 0.00012837 -0.033119 -1.5873E-05 0.23472 0.0001125 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.82752 1 17412 17412 2.3027 0 1 496720 + 39449 31764 24978 24989 44823 44823 0.061656708997588794 RVSDHKHHP 9 Unmodified _RVSDHKHHP_ 0 0 0 ENST00000459962.1_1_1:56962225-56977851:-|nuORF;ENSG00000162407|ENST00000371250|PLPP3 ENST00000459962.1_1_1:56962225-56977851:-|nuORF ENST00000459962.1_1_1:56962225-56977851:-|nuORF MSMS UPN46_class_I_Rep_3 1 556.8418579101562 2 556.789038 1111.56352 NaN NaN NaN NaN NaN NaN NaN 56.488 1 56.488 55.988 56.988 0 0 0 0 0.38916 1 12324 12324 3.2813 0.28607 1 39450 3928 24979 24990 44824 44824 0.01220430857665633 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 MSMS UPN46_class_I_Rep_3 1 532.7902221679688 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 63.599 1 63.599 63.099 64.099 0 0 0 0 0.092202 1 14287 14287 26.268 0.86883 1 39451 1927 24980 24991 44825 44825 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 MSMS UPN46_class_I_Rep_3 1 532.7908935546875 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 63.845 1 63.845 63.345 64.345 0 0 0 0 0.10427 1 14346 14346 23.79 3.3362 1 39452 1927 24980 24991 44826 44826 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 MULTI-MSMS UPN47_class_I_Rep_1 2 532.7905883789062 2 532.790381 1063.56621 0.36365 0.00019375 0.14569 7.7623E-05 0.50934 0.00027137 532.7904143561532 57.979 1.1221 61.416 60.981 62.103 3.437 210 71 4 0 0 0 0.01093 3 13348 13264;13306;13348 69.338 27.499 1 1856400 39453 1927 24980 24991 44827;44828;44829 44829 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 MULTI-MSMS UPN47_class_I_Rep_2 3 532.7905883789062 2 532.790381 1063.56621 0.38238 0.00020373 0.050176 2.6733E-05 0.43256 0.00023046 532.7903705184765 58.208 1.322 61.49 61.066 62.388 3.2818 200 83 3 0 0 0 0.0054476 5 13444 13365;13405;13444;13644;13688 94.909 44.976 1 2051700 39454 1927 24980 24991 44830;44831;44832;44833;44834 44832 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 nc|ENSG00000110075|Q5H9R7-3|PPP6R3 MULTI-MSMS UPN47_class_I_Rep_3 4 532.7904663085938 2 532.790381 1063.56621 0.29708 0.00015828 0.24185 0.00012885 0.53893 0.00028714 532.7904656567258 58.311 1.476 61.477 61.09 62.566 3.1658 215 91 3 0 0 0 0.016816 7 13520 13460;13520;13601;13644;13692;13736;13789 65.474 23.634 1 2378700 39455 1927 24980 24991 44835;44836;44837;44838;44839;44840;44841 44836 0.036968414719467546 RVSFLGVVT 9 Unmodified _RVSFLGVVT_ 0 0 0 HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|161|3|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|161|3|sense HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|161|3|sense MSMS UPN48_class_I_Rep_3 7 489.6275329589844 2 489.292559 976.570566 NaN NaN NaN NaN NaN NaN NaN 72.214 1 75.741 75.241 76.241 3.5266 0 0 0 0.36505 1 16819 16819 7.2892 0 1 39456 8257 24981 24992 44842 44842 0.08134350685543268 RVSKGKKKS 9 Unmodified _RVSKGKKKS_ 0 0 0 HAL1_dup1689|chr1:229337731-229338409:+|1.5091555241651209|0.0528151155263712|4.84|151.0|1|1|sense HAL1_dup1689|chr1:229337731-229338409:+|1.5091555241651209|0.0528151155263712|4.84|151.0|1|1|sense HAL1_dup1689|chr1:229337731-229338409:+|1.5091555241651209|0.0528151155263712|4.84|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 509.3306579589844 2 509.330008 1016.64546 NaN NaN NaN NaN NaN NaN NaN 108.35 1 111.99 111.49 112.49 3.6313 0 0 0 0.4029 1 26211 26211 0 0 1 39457 7827 24982 24993 44843 44843 0.1378053321676589 RVSLAPEAPL 10 Unmodified _RVSLAPEAPL_ 0 0 0 MLT1A0-int_dup200|chr3:142000544-142001855:-|2.711634354267814|0.0633176357742503|5.42|151.0|61|2|anti-sense MLT1A0-int_dup200|chr3:142000544-142001855:-|2.711634354267814|0.0633176357742503|5.42|151.0|61|2|anti-sense MLT1A0-int_dup200|chr3:142000544-142001855:-|2.711634354267814|0.0633176357742503|5.42|151.0|61|2|anti-sense MSMS UPN47_class_I_Rep_3 4 526.8078002929688 2 526.808574 1051.60259 NaN NaN NaN NaN NaN NaN NaN 29.65 1 32.974 32.474 33.474 3.3235 0 0 0 0.53105 1 4822 4822 1.4819 0 1 39458 16259 24983 24994 44844 44844 0.07885718368675043 RVSLQLPR 8 Unmodified _RVSLQLPR_ 0 0 0 ENST00000575331.1_1_17:7342939-7343908:+|nuORF ENST00000575331.1_1_17:7342939-7343908:+|nuORF ENST00000575331.1_1_17:7342939-7343908:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 484.8039855957031 2 484.803626 967.592698 0.26117 0.00012662 -0.0060797 -2.9475E-06 0.25509 0.00012367 484.8035633527937 40.934 0.13748 40.934 40.9 41.038 0 22 12 2 0 0 0 0.82752 1 7999 7999 29.082 1.4528 1 314520 39459 7527 24984 24995 44845 44845 0.10760575153949503 RVSRPKPRRN 10 Unmodified _RVSRPKPRRN_ 0 0 0 ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF MSMS UPN48_class_I_Rep_2 6 422.59246826171875 3 422.593566 1264.75887 NaN NaN NaN NaN NaN NaN NaN 60.186 1 63.673 63.173 64.173 3.4868 0 0 0 0.53105 1 13269 13269 1.5923 0.13716 1 39460 7486 24985 24996 44846 44846 0.13708021382512925 RVSVFMLV 8 Unmodified _RVSVFMLV_ 0 0 0 L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|82|2|anti-sense L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|82|2|anti-sense L1MA4_dup9582|chr20:3607105-3608684:-|2.198556119065956|0.1144724033761869|4.26|151.0|82|2|anti-sense MSMS UPN48_class_I_Rep_1 5 475.76824951171875 2 475.778231 949.541908 NaN NaN NaN NaN NaN NaN NaN 66.483 1 69.935 69.435 70.435 3.4516 0 0 0 0.40659 1 15207 15207 1.8442 0 1 39461 9748 24986 24997 44847 44847 0.06511909784740055 RVTHVVTLKIS 11 Unmodified _RVTHVVTLKIS_ 0 0 0 REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 626.8896484375 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 106.4 1 109.93 109.43 110.43 3.5345 0 0 0 0.38417 1 25775 25775 2.4985 0 1 + 39462 32669 24987 24998 44848 44848 0.15049316139561597 RVTHVVTLKIS 11 Unmodified _RVTHVVTLKIS_ 0 0 0 REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 626.89013671875 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.61 1 109.24 108.74 109.74 3.6277 0 0 0 0.38417 1 25441 25441 2.4985 0 1 + 39463 32669 24987 24998 44849 44849 0.15049316139561597 RVTHVVTLKIS 11 Unmodified _RVTHVVTLKIS_ 0 0 0 REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 626.8890991210938 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.69 1 109.32 108.82 109.82 3.6277 0 0 0 0.38417 1 25462 25462 2.4985 0 1 + 39464 32669 24987 24998 44850 44850 0.15049316139561597 RVTHVVTLKIS 11 Unmodified _RVTHVVTLKIS_ 0 0 0 REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense REV__Tigger2_dup338|chr2:68169229-68169914:-|1.293623728641526|0.0511096973774103|4.66|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 626.8896484375 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 106.07 1 109.7 109.2 110.2 3.6277 0 0 0 0.38417 1 25564 25564 2.4985 0 1 + 39465 32669 24987 24998 44851 44851 0.15049316139561597 RVTLWIWIIP 10 Unmodified _RVTLWIWIIP_ 0 0 0 REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|67|3|anti-sense REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|67|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 432.88525390625 3 432.932414 1295.77541 -0.37513 -0.0001624 -1.0715 -0.00046387 -1.4466 -0.00062627 432.9320402517682 99.474 0.096024 102.92 102.84 102.94 3.4483 18 13 2 0 0 0 0.84575 1 24584 24584 0.77653 0.77653 1 59241 + 39466 23480 24988 24999 44852 44852 0.13935709495876836 RVTLWIWIIP 10 Unmodified _RVTLWIWIIP_ 0 0 0 REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|67|3|anti-sense REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|67|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 432.932414 1295.77541 -0.20904 -9.0502E-05 -1.7903 -0.0007751 -1.9994 -0.0008656 432.9317145345719 99.582 0.13706 103.08 103.04 103.18 3.4974 0.078836 -0.00066521 NaN 0.77653 21 19 2 NaN NaN NaN NaN 0 NaN NaN 0 52943 + 39467 23480 24988 24999 0.13935709495876836 RVTRSLDMW 9 Unmodified _RVTRSLDMW_ 0 0 0 ENST00000534164.5_1_16:15012355-15014181:+|nuORF;ENST00000525846.6_1_16:18443548-18445649:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF ENST00000534164.5_1_16:15012355-15014181:+|nuORF ENST00000534164.5_1_16:15012355-15014181:+|nuORF MSMS UPN48_class_I_Rep_2 6 582.30322265625 2 582.303133 1162.59171 NaN NaN NaN NaN NaN NaN NaN 93.897 1 97.674 97.174 98.174 3.7761 0 0 0 0.39518 1 22328 22328 1.8442 0.19162 1 39468 7257 24989 25000 44853 44853 0.016919927227263543 RVVCFFVI 8 Unmodified _RVVCFFVI_ 0 0 0 L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|115|3|anti-sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|115|3|anti-sense L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_2 6 491.79571533203125 2 491.780773 981.546994 NaN NaN NaN NaN NaN NaN NaN 45.889 1 49.647 49.147 50.147 3.7579 0 0 0 0.40404 1 8907 8907 5.2307 0 1 39469 10141 24990 25001 44854 44854 0.055482136473528954 RVVGDKNPL 9 Unmodified _RVVGDKNPL_ 0 0 0 REV__nc|ENSG00000103197|P49815-7|TSC2 REV__nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN46_class_I_Rep_3 1 499.8936767578125 2 499.293091 996.571629 0.26025 0.00012994 -1.3402 -0.00066916 -1.08 -0.00053922 499.293456530521 69.384 0.081718 69.384 69.319 69.401 0 9 8 2 0 0 0 0.49187 1 15886 15886 1.4819 0.79152 1 37185 + 39470 18220 24991 25002 44855 44855 0.07320565054419603 RVVKALLL 8 Unmodified _RVVKALLL_ 0 0 0 BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|9|1|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|9|1|sense BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 456.32354736328125 2 456.323663 910.632772 0.089495 4.0839E-05 0.016133 7.362E-06 0.10563 4.8201E-05 456.32352000108773 44.261 0.8568 48.023 47.716 48.573 3.7617 92 62 2 0 0 0 0.82752 4 8368 8368;8412;8452;8496 16.942 0 1 107180 39471 422 24992 25003 44856;44857;44858;44859 44856 0.17388121824524205 RVVKAPIVA 9 Unmodified _RVVKAPIVA_ 0 0 0 REV__nc|ENSG00000113161|P04035-2|HMGCR REV__nc|ENSG00000113161|P04035-2|HMGCR MULTI-SECPEP UPN48_class_I_Rep_2 6 477.23443603515625 2 476.818744 951.622936 0.16159 7.705E-05 -0.15578 -7.4278E-05 0.0058139 2.7722E-06 476.8185556433685 41.93 0.37458 45.688 45.537 45.912 3.7579 58 37 2 0 0 0 0.12034 1 7735 7735 7.2892 0 1 108840 + 39472 18494 24993 25004 44860 44860 0.14518933819135782 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 55.743 1 59.222 58.722 59.722 3.4785 0 0 0 0.53105 1 12677 12677 0 0 1 + 39473 30387 24994 25005 44861 44861 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 485.81146240234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.021 1 72.389 71.889 72.889 3.3678 0 0 0 0.53105 1 16700 16700 0 0 1 + 39474 30387 24994 25005 44862 44862 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 485.8113708496094 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.69 1 73.058 72.558 73.558 3.3678 0 0 0 0.53105 1 16899 16899 0 0 1 + 39475 30387 24994 25005 44863 44863 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 485.8119812011719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 78.627 1 82.072 81.572 82.572 3.4456 0 0 0 0.53105 1 19555 19555 0 0 1 + 39476 30387 24994 25005 44864 44864 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 485.3423156738281 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 102.19 1 105.97 105.47 106.47 3.7888 0 0 0 0.53105 1 25164 25164 0 0 1 + 39477 30387 24994 25005 44865 44865 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 18.056 1 21.443 20.943 21.943 3.387 0 0 0 0.53105 1 1462 1462 0 0 1 + 39478 30387 24994 25005 44866 44866 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.81170654296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 21.161 1 24.568 24.068 25.068 3.4074 0 0 0 0.53105 1 2320 2320 0 0 1 + 39479 30387 24994 25005 44867 44867 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8114929199219 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 50.203 1 53.546 53.046 54.046 3.3431 0 0 0 0.53105 1 11014 11014 0 0 1 + 39480 30387 24994 25005 44868 44868 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 58.118 1 61.41 60.91 61.91 3.2912 0 0 0 0.53105 1 13430 13430 0 0 1 + 39481 30387 24994 25005 44869 44869 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 64.095 1 67.351 66.851 67.851 3.2556 0 0 0 0.53105 1 15246 15246 0 0 1 + 39482 30387 24994 25005 44870 44870 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8115234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.279 1 72.555 72.055 73.055 3.2761 0 0 0 0.53105 1 16814 16814 0 0 1 + 39483 30387 24994 25005 44871 44871 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8118591308594 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 79.355 1 82.711 82.211 83.211 3.3554 0 0 0 0.53105 1 19751 19751 0 0 1 + 39484 30387 24994 25005 44872 44872 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 87.426 1 90.873 90.373 91.373 3.4471 0 0 0 0.53105 1 21733 21733 0 0 1 + 39485 30387 24994 25005 44873 44873 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 95.847 1 99.323 98.823 99.823 3.4753 0 0 0 0.53105 1 23578 23578 0 0 1 + 39486 30387 24994 25005 44874 44874 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 485.3418884277344 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 102.01 1 105.52 105.02 106.02 3.5151 0 0 0 0.53105 1 24855 24855 0 0 1 + 39487 30387 24994 25005 44875 44875 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 485.8116149902344 2 485.811451 969.608348 0.18743 9.1056E-05 1.0982 0.0005335 1.2856 0.00062455 485.811670560519 68.743 0.10732 72.012 71.98 72.087 3.2696 16 9 2 0 0 0 0.84575 1 16676 16676 0 0 1 294540 + 39488 30387 24994 25005 44876 44876 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 38.869 1 42.107 41.607 42.607 3.238 0 0 0 0.53105 1 7616 7616 0 0 1 + 39489 30387 24994 25005 44877 44877 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 42.354 1 45.594 45.094 46.094 3.2394 0 0 0 0.53105 1 8681 8681 0 0 1 + 39490 30387 24994 25005 44878 44878 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.81231689453125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 66.787 1 69.972 69.472 70.472 3.1853 0 0 0 0.53105 1 16131 16131 0 0 1 + 39491 30387 24994 25005 44879 44879 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.81134033203125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.17 1 73.382 72.882 73.882 3.2113 0 0 0 0.53105 1 17150 17150 0 0 1 + 39492 30387 24994 25005 44880 44880 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.8122863769531 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.874 1 74.085 73.585 74.585 3.2113 0 0 0 0.53105 1 17362 17362 0 0 1 + 39493 30387 24994 25005 44881 44881 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 89.277 1 92.67 92.17 93.17 3.3931 0 0 0 0.53105 1 22386 22386 0 0 1 + 39494 30387 24994 25005 44882 44882 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 95.8 1 99.21 98.71 99.71 3.4095 0 0 0 0.53105 1 23801 23801 0 0 1 + 39495 30387 24994 25005 44883 44883 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 485.8113708496094 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 102.17 1 105.66 105.16 106.16 3.4873 0 0 0 0.53105 1 25130 25130 0 0 1 + 39496 30387 24994 25005 44884 44884 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 485.8115539550781 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 113.01 1 116.64 116.14 117.14 3.6314 0 0 0 0.53105 1 27442 27442 0 0 1 + 39497 30387 24994 25005 44885 44885 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 485.8113098144531 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 115.93 1 119.59 119.09 120.09 3.6607 0 0 0 0.53105 1 27759 27759 0 0 1 + 39498 30387 24994 25005 44886 44886 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.895 1 69.403 68.903 69.903 3.5077 0 0 0 0.53105 1 14926 14926 0 0 1 + 39499 30387 24994 25005 44887 44887 0.122328616710206 RVVKGGKGGL 10 Unmodified _RVVKGGKGGL_ 0 0 0 REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense REV__L1PB1_dup363|chr1:109553711-109554856:-|1.2684511796584643|0.01922369046021|6.04|151.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 485.8123779296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 67.768 1 71.276 70.776 71.776 3.5077 0 0 0 0.53105 1 15495 15495 0 0 1 + 39500 30387 24994 25005 44888 44888 0.122328616710206 RVVKKVEET 9 Unmodified _RVVKKVEET_ 0 0 0 REV__CADPS2|p.A796T|1|0.08|ENSG00000081803|chr7:122438431-122438431|C/T|missense_variant REV__CADPS2|p.A796T|1|0.08|ENSG00000081803|chr7:122438431-122438431|C/T|missense_variant MSMS UPN47_class_I_Rep_2 3 544.7178955078125 2 544.327131 1086.63971 NaN NaN NaN NaN NaN NaN NaN 118.4 1 121.89 121.39 122.39 3.4822 0 0 0 0.4007 1 28971 28971 0.52476 0 1 + 39501 17261 24995 25006 44889 44889 0.09985389914436382 RVVKLAMML 9 Unmodified _RVVKLAMML_ 0 0 0 REV__ENST00000526627.1_1_5:150175531-150175765:+|nuORF REV__ENST00000526627.1_1_5:150175531-150175765:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.8219604492188 2 530.822115 1059.62968 0.3431 0.00018213 -0.95204 -0.00050536 -0.60894 -0.00032324 530.8216628580847 73.63 0.37657 77.016 76.753 77.129 3.3861 53 35 2 0 0 0 0.48414 1 18096 18096 2.3027 0.24298 1 137680 + 39502 22809 24996 25007 44890 44890 0.10224787383822331 RVVKLAMML 9 Unmodified _RVVKLAMML_ 0 0 0 REV__ENST00000526627.1_1_5:150175531-150175765:+|nuORF REV__ENST00000526627.1_1_5:150175531-150175765:+|nuORF MSMS UPN48_class_I_Rep_3 7 530.8211059570312 2 530.822115 1059.62968 NaN NaN NaN NaN NaN NaN NaN 76.19 1 79.773 79.273 80.273 3.5831 0 0 0 0.40038 1 17938 17938 0.6015 0 1 + 39503 22809 24996 25007 44891 44891 0.10224787383822331 RVVKPRVL 8 Unmodified _RVVKPRVL_ 0 0 0 REV__ENSG00000112118|ENST00000596288|MCM3 REV__ENSG00000112118|ENST00000596288|MCM3 MSMS UPN48_class_I_Rep_2 6 483.83074951171875 2 483.832186 965.649819 NaN NaN NaN NaN NaN NaN NaN 74.085 1 77.663 77.163 78.163 3.5779 0 0 0 0.40738 1 17423 17423 0.79363 0 1 + 39504 18475 24997 25008 44892 44892 0.1656204243031425 RVVLEHEE 8 Unmodified _RVVLEHEE_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-SECPEP UPN46_class_I_Rep_3 1 506.1045837402344 2 505.766906 1009.51926 0.27322 0.00013819 0.96485 0.00048799 1.2381 0.00062618 506.2705850178562 71.787 0.08551 71.787 71.723 71.809 0 7 5 2 0 0 0 0.72333 1 16543 16543 2.5775 0.73324 1 35243 39505 4928 24998 25009 44893 44893 0.014879819208090339 RVVLPVWL 8 Unmodified _RVVLPVWL_ 0 0 0 nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL nc|ENSG00000134086|P40337-3|VHL nc|ENSG00000134086|P40337-3|VHL MSMS UPN47_class_I_Rep_3 4 491.31378173828125 2 491.315838 980.617122 NaN NaN NaN NaN NaN NaN NaN 25.214 1 28.564 28.064 29.064 3.3509 0 0 0 0.40604 1 3509 3509 2.5775 0 1 39506 2832 24999 25010 44894 44894 0.12603835307459121 RVVNVKEK 8 Unmodified _RVVNVKEK_ 0 0 0 Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 486.30364990234375 2 486.303458 970.592364 NaN NaN NaN NaN NaN NaN NaN 78.445 1 82.068 81.568 82.568 3.6222 0 0 0 0.40501 1 18609 18609 3.9444 0 1 39507 33003 25000 25011 44895 44895 0.10589155434092845 RVVNVKEK 8 Unmodified _RVVNVKEK_ 0 0 0 Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 486.3035583496094 2 486.303458 970.592364 NaN NaN NaN NaN NaN NaN NaN 78.537 1 82.158 81.658 82.658 3.6216 0 0 0 0.40501 1 18593 18593 3.9444 0 1 39508 33003 25000 25011 44896 44896 0.10589155434092845 RVVPHGQSF 9 Unmodified _RVVPHGQSF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MSMS UPN46_class_I_Rep_3 1 513.7781372070312 2 513.777608 1025.54066 NaN NaN NaN NaN NaN NaN NaN 30.499 1 30.499 29.999 30.999 0 0 0 0 0.38784 1 4976 4976 3.5965 1.019 1 39509 794 25001 25012 44897 44897 0.028914117401882322 RVVPQNVK 8 Unmodified _RVVPQNVK_ 0 0 0 L1M3_dup3371|chr9:93032048-93032509:-|2.146319228475682|0.3356600670979525|2.68|151.0|12|3|sense L1M3_dup3371|chr9:93032048-93032509:-|2.146319228475682|0.3356600670979525|2.68|151.0|12|3|sense L1M3_dup3371|chr9:93032048-93032509:-|2.146319228475682|0.3356600670979525|2.68|151.0|12|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 470.7929382324219 2 470.290351 938.566149 -0.76127 -0.00035802 0.3602 0.0001694 -0.40107 -0.00018862 470.29030710969914 22.699 0.85733 26.05 25.74 26.598 3.3503 134 74 2 0 0 0 0.82752 1 2688 2688 2.5775 0 1 150100 39510 8761 25002 25013 44898 44898 0.09440886262609638 RVVRDTIK 8 Unmodified _RVVRDTIK_ 0 0 0 ENSG00000151224|ENST00000372213|MAT1A ENSG00000151224|ENST00000372213|MAT1A ENSG00000151224|ENST00000372213|MAT1A MSMS UPN46_class_I_Rep_3 1 493.8091125488281 2 493.808908 985.603263 NaN NaN NaN NaN NaN NaN NaN 82.164 1 82.164 81.664 82.664 0 0 0 0 0.40753 1 19448 19448 0.6015 0 1 39511 3581 25003 25014 44899 44899 0.10988557808389032 RVVRNNLRV 9 Unmodified _RVVRNNLRV_ 0 0 0 ENST00000493886.5_1_9:35062192-35072350:-|nuORF;ENSG00000165280|ENST00000358901|VCP ENST00000493886.5_1_9:35062192-35072350:-|nuORF ENST00000493886.5_1_9:35062192-35072350:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 563.3511962890625 2 563.351806 1124.68906 0.44849 0.00025266 -0.13225 -7.4503E-05 0.31624 0.00017816 563.3511238405403 93.285 0.078491 93.285 93.249 93.327 0 11 5 3 0 0 0 0.50088 1 22606 22606 0.52476 0 1 119770 39512 4171 25004 25015 44900 44900 0.13170142713852329 RVVRQFWFC 9 Unmodified _RVVRQFWFC_ 0 0 0 REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|182|3|anti-sense REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|182|3|anti-sense MSMS UPN47_class_I_Rep_2 3 620.822998046875 2 620.824035 1239.63352 NaN NaN NaN NaN NaN NaN NaN 39.281 1 42.66 42.16 43.16 3.3785 0 0 0 0.40038 1 7697 7697 0.6015 0 1 + 39513 29167 25005 25016 44901 44901 0.02328593201923468 RVVSNLLYY 9 Unmodified _RVVSNLLYY_ 0 0 0 ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 MULTI-MSMS UPN48_class_I_Rep_1 5 563.8168334960938 2 563.816399 1125.61824 0.50285 0.00028351 0.33238 0.0001874 0.83523 0.00047092 563.8166696905457 55.797 1.3127 59.298 58.764 60.077 3.5014 284 95 4 0 0 0 0.062142 9 11927 11840;11882;11927;11966;12005;12010;12046;12063;12090 43.772 16.889 1 3498700 39514 3371 25006 25017 44902;44903;44904;44905;44906;44907;44908;44909;44910 44904 0.060460048857066795 RVVSNLLYY 9 Unmodified _RVVSNLLYY_ 0 0 0 ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 MULTI-MSMS UPN48_class_I_Rep_2 6 563.8170166015625 2 563.816399 1125.61824 0.61225 0.0003452 0.30943 0.00017446 0.92168 0.00051966 563.8166704488194 55.797 1.3333 59.353 58.786 60.119 3.5559 279 95 4 0 0 0 0.043452 10 11909 11784;11822;11867;11909;11944;11962;11986;12008;12026;12096 51.63 19.324 1 3616200 39515 3371 25006 25017 44911;44912;44913;44914;44915;44916;44917;44918;44919;44920 44914 0.060460048857066795 RVVSNLLYY 9 Unmodified _RVVSNLLYY_ 0 0 0 ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF ENSG00000144746|ENST00000273258|ARL6IP5 ENSG00000144746|ENST00000273258|ARL6IP5 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 563.816399 1125.61824 0.32058 0.00018075 0.61409 0.00034623 0.93467 0.00052698 563.8168230452036 55.732 1.1207 59.288 58.694 59.814 3.5554 -0.025203 0.00023602 NaN 51.63 263 79 5 NaN NaN NaN NaN 0 NaN NaN 0 4622400 39516 3371 25006 25017 0.060460048857066795 RVVVKILKP 9 Unmodified _RVVVKILKP_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.V74G|1|0.07|ENSG00000070770|chr16:58186852-58186852|A/C|missense_variant ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MSMS UPN46_class_I_Rep_3 1 526.3721923828125 2 526.371144 1050.72774 NaN NaN NaN NaN NaN NaN NaN 97.586 1 97.586 97.086 98.086 0 0 0 0 0.4029 1 23749 23749 0 0 1 39517 1078 25007 25018 44921 44921 0.20440055295716775 RVVVKILKP 9 Unmodified _RVVVKILKP_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.V74G|1|0.07|ENSG00000070770|chr16:58186852-58186852|A/C|missense_variant ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MSMS UPN46_class_I_Rep_3 1 526.37255859375 2 526.371144 1050.72774 NaN NaN NaN NaN NaN NaN NaN 101.66 1 101.66 101.16 102.16 0 0 0 0 0.4029 1 24803 24803 0 0 1 39518 1078 25007 25018 44922 44922 0.20440055295716775 RVVVKILKP 9 Unmodified _RVVVKILKP_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.V74G|1|0.07|ENSG00000070770|chr16:58186852-58186852|A/C|missense_variant ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MSMS UPN47_class_I_Rep_1 2 526.3728637695312 2 526.371144 1050.72774 NaN NaN NaN NaN NaN NaN NaN 94.829 1 98.579 98.079 99.079 3.7508 0 0 0 0.4029 1 23549 23549 0 0 1 39519 1078 25007 25018 44923 44923 0.20440055295716775 RVVVKILKP 9 Unmodified _RVVVKILKP_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.V74G|1|0.07|ENSG00000070770|chr16:58186852-58186852|A/C|missense_variant ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MSMS UPN47_class_I_Rep_1 2 526.3724365234375 2 526.371144 1050.72774 NaN NaN NaN NaN NaN NaN NaN 100.3 1 104.09 103.59 104.59 3.7942 0 0 0 0.4029 1 24798 24798 0 0 1 39520 1078 25007 25018 44924 44924 0.20440055295716775 RVVVLPLR 8 Unmodified _RVVVLPLR_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 476.3277587890625 2 476.326737 950.63892 0.22366 0.00010654 0.82039 0.00039077 1.0441 0.00049731 476.3271079837478 107.8 0.23264 111.48 111.36 111.59 3.6783 37 24 2 0 0 0 0.82752 1 25512 25512 2.5775 0 1 8923400 39521 14364 25008 25019 44925 44925 0.161626400560408 RVVVLPLR 8 Unmodified _RVVVLPLR_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 476.326737 950.63892 0.23717 0.00011297 -0.11076 -5.2758E-05 0.12641 6.0212E-05 476.3267324083235 107.92 0.069374 111.56 111.5 111.57 3.6355 -0.0013663 -0.00067453 NaN 2.5775 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 741480 39522 14364 25008 25019 0.161626400560408 RVVVLPLR 8 Unmodified _RVVVLPLR_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 476.326737 950.63892 0.10132 4.8259E-05 0.45401 0.00021626 0.55532 0.00026452 476.3270925807657 107.97 0.086617 111.6 111.56 111.64 3.6313 0.040746 -0.0001365 NaN 2.5775 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 391630 39523 14364 25008 25019 0.161626400560408 RVVVLPLR 8 Unmodified _RVVVLPLR_ 0 0 0 L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|6|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 476.326737 950.63892 0.22366 0.00010654 0.82039 0.00039077 1.0441 0.00049731 476.3271079837478 107.8 0.23264 111.48 111.36 111.59 3.6783 -0.083095 0.00021253 NaN 2.5775 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 8923400 39524 14364 25008 25019 0.161626400560408 RVWDLPTI 8 Unmodified _RVWDLPTI_ 0 0 0 REV__MER34B-int_dup389|chr9:92232802-92233559:+|1.0291972275347858|0.0736285525058819|3.81|151.0|23|2|sense REV__MER34B-int_dup389|chr9:92232802-92233559:+|1.0291972275347858|0.0736285525058819|3.81|151.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 500.2829895019531 2 500.284734 998.554916 NaN NaN NaN NaN NaN NaN NaN 35.151 1 38.415 37.915 38.915 3.2639 0 0 0 0.40625 1 6476 6476 2.3027 0 1 + 39525 31268 25009 25020 44926 44926 0.05558064168462806 RVWFSRTR 8 Unmodified _RVWFSRTR_ 0 0 0 REV__MLT1B_dup13337|chr12:104624711-104625086:-|2.035070091544915|0.0087857538679626|7.86|151.0|22|3|anti-sense REV__MLT1B_dup13337|chr12:104624711-104625086:-|2.035070091544915|0.0087857538679626|7.86|151.0|22|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 554.3443603515625 2 554.312149 1106.60975 0.48699 0.00026995 2.0916 0.0011594 2.5786 0.0014294 554.3134328132361 72.562 0.1534 76.127 76.056 76.21 3.5645 15 12 2 0 0 0 0.72333 1 16996 16996 2.5775 0.27475 1 56605 + 39526 31618 25010 25021 44927 44927 0.06070495759740879 RVWGVPPY 8 Unmodified _RVWGVPPY_ 0 0 0 REV__MER21C_dup4801|chr17:72871362-72872096:+|1.6538969017952727|0.0044941820049387|8.52|151.0|25|3|sense REV__MER21C_dup4801|chr17:72871362-72872096:+|1.6538969017952727|0.0044941820049387|8.52|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 487.266357421875 2 487.266345 972.518136 NaN NaN NaN NaN NaN NaN NaN 43.817 1 47.175 46.675 47.675 3.358 0 0 0 0.40625 1 9076 9076 2.3027 0 1 + 39527 31243 25011 25022 44928 44928 0.03077812342564812 RVWKVPKPRRK 11 Unmodified _RVWKVPKPRRK_ 0 0 0 ENSG00000187166|ENST00000335017|H1-7 ENSG00000187166|ENST00000335017|H1-7 ENSG00000187166|ENST00000335017|H1-7 MULTI-MSMS UPN48_class_I_Rep_2 6 483.9809875488281 3 483.980762 1448.92046 0.17637 8.5361E-05 0.32314 0.00015639 0.49951 0.00024175 483.9809225456009 49.102 0.33197 52.819 52.729 53.061 3.7175 30 23 2 0 0 0 0.68491 1 9875 9875 0.08335 0.08335 1 187730 39528 5184 25012 25023 44929 44929 0.21395190415569232 RVWLIMLLPFH 11 Unmodified _RVWLIMLLPFH_ 0 0 0 REV__MLT1H1_dup3320|chr19:3160015-3160229:-|2.8225098065109657|0.0512850391788975|5.78|151.0|10|1|anti-sense REV__MLT1H1_dup3320|chr19:3160015-3160229:-|2.8225098065109657|0.0512850391788975|5.78|151.0|10|1|anti-sense MSMS UPN48_class_I_Rep_3 7 475.6127014160156 3 475.612687 1423.81623 NaN NaN NaN NaN NaN NaN NaN 59.897 1 63.414 62.914 63.914 3.5169 0 0 0 0.38417 1 13113 13113 1.4551 0.12547 1 + 39529 31758 25013 25024 44930 44930 0.12127727543838773 RVWNLNHL 8 Unmodified _RVWNLNHL_ 0 0 0 nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B nc|ENSG00000168071|A6NC98-2|CCDC88B nc|ENSG00000168071|A6NC98-2|CCDC88B MSMS UPN48_class_I_Rep_3 7 526.2929077148438 2 526.293425 1050.5723 NaN NaN NaN NaN NaN NaN NaN 28.357 1 32.099 31.599 32.599 3.7424 0 0 0 0.40746 1 3845 3845 0.69038 0 1 39530 4350 25014 25025 44931 44931 0.049034044941208776 RVWSWTSIP 9 Unmodified _RVWSWTSIP_ 0 0 0 L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|75|3|anti-sense L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|75|3|anti-sense L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|75|3|anti-sense MSMS UPN48_class_I_Rep_2 6 566.3008422851562 2 566.300916 1130.58728 NaN NaN NaN NaN NaN NaN NaN 43.888 1 47.65 47.15 48.15 3.7617 0 0 0 0.38478 1 8302 8302 4.3292 1.0479 1 39531 13403 25015 25026 44932 44932 0.027208515714846726 RVYEVFDVEC 10 Unmodified _RVYEVFDVEC_ 0 0 0 REV__ENSG00000188015|ENST00000368713|S100A3 REV__ENSG00000188015|ENST00000368713|S100A3 MSMS UPN48_class_I_Rep_2 6 629.79150390625 2 629.792263 1257.56997 NaN NaN NaN NaN NaN NaN NaN 31.824 1 35.465 34.965 35.965 3.641 0 0 0 0.53105 1 4837 4837 1.4819 0 1 + 39532 20950 25016 25027 44933 44933 -0.04850856816506166 RVYHIKGP 8 Unmodified _RVYHIKGP_ 0 0 0 L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|12|1|sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|12|1|sense L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 485.2853698730469 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 69.411 1 72.866 72.366 73.366 3.4548 0 0 0 0.40746 1 16101 16101 0.69038 0 1 39533 15253 25017 25028 44934 44934 0.07004903608185487 RVYHVGLG 8 Unmodified _RVYHVGLG_ 0 0 0 ENSG00000196562.14,SULF2,chr20,-,I19.1,47661897,47663069|32|9.79|2|intron;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562.14,SULF2,chr20,-,I19.1,47661897,47663069|32|9.79|2|intron ENSG00000196562.14,SULF2,chr20,-,I19.1,47661897,47663069|32|9.79|2|intron MSMS UPN46_class_I_Rep_3 1 450.7566833496094 2 450.756144 899.497735 NaN NaN NaN NaN NaN NaN NaN 68.084 1 68.084 67.584 68.584 0 0 0 0 0.40738 1 15529 15529 0.79363 0 1 39534 5317 25018 25029 44935 44935 0.04396641682762947 RVYIGRLSY 9 Unmodified _RVYIGRLSY_ 0 0 0 nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4 nc|ENSG00000124193|Q13247-2|SRSF6 nc|ENSG00000124193|Q13247-2|SRSF6 MULTI-MSMS UPN46_class_I_Rep_3 1 563.822509765625 2 563.822015 1125.62948 0.40641 0.00022914 -0.14084 -7.941E-05 0.26557 0.00014973 563.8219096500864 48.059 0.34462 48.059 47.849 48.194 0 67 38 3 0 0 0 0.14216 2 9973 9973;10012 26.268 9.3258 1 388880 39535 2179 25019 25030 44936;44937 44936 0.07168826979864207 RVYIGRLSY 9 Unmodified _RVYIGRLSY_ 0 0 0 nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4 nc|ENSG00000124193|Q13247-2|SRSF6 nc|ENSG00000124193|Q13247-2|SRSF6 MSMS UPN48_class_I_Rep_1 5 563.821533203125 2 563.822015 1125.62948 NaN NaN NaN NaN NaN NaN NaN 44.932 1 48.445 47.945 48.945 3.5132 0 0 0 0.37891 1 8610 8610 5.7319 0.50118 1 39536 2179 25019 25030 44938 44938 0.07168826979864207 RVYKSLLLL 9 Unmodified _RVYKSLLLL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS UPN48_class_I_Rep_1 5 552.8604736328125 2 552.860609 1103.70667 0.58056 0.00032097 -0.25154 -0.00013907 0.32902 0.0001819 552.8603887074418 56.463 1.1623 59.965 59.374 60.537 3.5014 195 95 3 0 0 0 0.052902 1 12179 12179 47.749 9.5731 1 864570 39537 2036 25020 25031 44939 44939 0.1589604519617751 RVYKSLLLL 9 Unmodified _RVYKSLLLL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS UPN48_class_I_Rep_2 6 552.8609619140625 2 552.860609 1103.70667 0.60992 0.0003372 -0.11733 -6.4865E-05 0.4926 0.00027234 552.8604507424893 56.32 0.66668 59.854 59.226 59.892 3.5333 105 49 3 0 0 0 0.047711 2 12080 12043;12080 49.933 9.9833 1 587580 39538 2036 25020 25031 44940;44941 44941 0.1589604519617751 RVYKSLLLL 9 Unmodified _RVYKSLLLL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS UPN48_class_I_Rep_2 6 552.86083984375 2 552.860609 1103.70667 0.60609 0.00033508 -0.32715 -0.00018087 0.27894 0.00015422 552.8603596102676 56.47 0.57168 60.003 59.878 60.45 3.5333 94 52 3 0 0 0 0.052902 1 12115 12115 47.749 9.5731 1 608830 39539 2036 25020 25031 44942 44942 0.1589604519617751 RVYKSLLLL 9 Unmodified _RVYKSLLLL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS UPN48_class_I_Rep_3 7 552.8609619140625 2 552.860609 1103.70667 0.27615 0.00015267 0.30674 0.00016958 0.58289 0.00032226 552.8606855861567 55.953 0.4765 59.509 59.144 59.621 3.5554 78 34 3 0 0 0 0.052902 2 11900 11900;11937 47.749 9.5731 1 750270 39540 2036 25020 25031 44943;44944 44943 0.1589604519617751 RVYKSLLLL 9 Unmodified _RVYKSLLLL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 552.860609 1103.70667 0.29288 0.00016192 0.44464 0.00024582 0.73752 0.00040775 553.3622671116938 56.694 0.095371 60.237 60.186 60.282 3.5427 0.16856 0.00075676 NaN 47.749 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 64026 39541 2036 25020 25031 0.1589604519617751 RVYKYINVL 9 Unmodified _RVYKYINVL_ 0 0 0 REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|41|3|anti-sense REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|41|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3487548828125 2 584.347866 1166.68118 0.28955 0.0001692 0.49342 0.00028833 0.78297 0.00045752 584.3481260543795 31.124 0.070774 31.124 31.07 31.141 0 8 5 2 0 0 0 0.48846 1 5157 5157 1.8442 0 1 243870 + 39542 23277 25021 25032 44945 44945 0.10450570673765469 RVYKYINVL 9 Unmodified _RVYKYINVL_ 0 0 0 REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|41|3|anti-sense REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 584.347900390625 2 584.347866 1166.68118 0.49902 0.0002916 0.58959 0.00034453 1.0886 0.00063613 584.3480727789824 108.65 0.62185 112.29 112.17 112.79 3.6355 170 56 4 0 0 0 0.42249 1 26820 26820 6.7232 0.51738 1 96538000 + 39543 23277 25021 25032 44946 44946 0.10450570673765469 RVYLGALKY 9 Unmodified _RVYLGALKY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_1 5 541.8215942382812 2 541.821484 1081.62842 0.39501 0.00021402 -0.075672 -4.1001E-05 0.31934 0.00017302 541.8213553482306 45.426 1.4497 48.942 48.534 49.983 3.5162 316 101 4 0 0 0 0.0068778 5 8771 8692;8732;8771;8806;8848 85.642 11.219 1 4108100 39544 4671 25022 25033 44947;44948;44949;44950;44951 44949 0.09086612610940392 RVYLGALKY 9 Unmodified _RVYLGALKY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_2 6 541.8215942382812 2 541.821484 1081.62842 0.39705 0.00021513 -0.13478 -7.3027E-05 0.26227 0.0001421 541.8213342478908 45.162 1.6703 48.92 48.395 50.065 3.7579 370 122 4 0 0 0 0.0064763 6 8641 8641;8677;8714;8751;8789;8949 96.111 31.875 1 3710100 39545 4671 25022 25033 44952;44953;44954;44955;44956;44957 44952 0.09086612610940392 RVYLGALKY 9 Unmodified _RVYLGALKY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_3 7 541.8215942382812 2 541.821484 1081.62842 0.44472 0.00024096 -0.14762 -7.9981E-05 0.29711 0.00016098 541.8213335547063 45.388 1.8061 49.025 48.468 50.274 3.6369 332 121 4 0 0 0 0.0068778 4 8670 8634;8670;8708;8750 85.642 21.405 1 4054400 39546 4671 25022 25033 44958;44959;44960;44961 44959 0.09086612610940392 RVYPQAVYF 9 Unmodified _RVYPQAVYF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|4|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|9|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|8|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_1 5 571.802734375 2 571.803291 1141.59203 0.4389 0.00025096 0.39132 0.00022376 0.83022 0.00047472 571.8035189664616 54.337 0.55154 57.851 57.543 58.094 3.5143 66 39 2 0 0 0 0.28552 1 11506 11506 14.838 8.1151 1 153430 39547 5298 25023 25034 44962 44962 0.026897357142161127 RVYPQAVYF 9 Unmodified _RVYPQAVYF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|4|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|9|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|8|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_2 6 571.80322265625 2 571.803291 1141.59203 0.5786 0.00033085 -0.078793 -4.5054E-05 0.49981 0.00028579 571.8032506445006 54.32 0.58497 57.902 57.505 58.09 3.5817 49 36 2 0 0 0 0.41259 1 11460 11460 7.2892 0.56607 1 138430 39548 5298 25023 25034 44963 44963 0.026897357142161127 RVYPQAVYF 9 Unmodified _RVYPQAVYF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|4|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|9|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|8|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_3 7 571.8025512695312 2 571.803291 1141.59203 0.32238 0.00018434 0.31984 0.00018289 0.64222 0.00036722 571.8034958414656 54.332 0.48698 57.901 57.611 58.098 3.5694 48 31 2 0 0 0 0.35081 1 11398 11398 10.824 2.9138 1 145590 39549 5298 25023 25034 44964 44964 0.026897357142161127 RVYYKTTV 8 Unmodified _RVYYKTTV_ 0 0 0 REV__L1MC5a_dup506|chr1:96789720-96790659:-|3.828095617933089|0.2892202889229892|3.73|151.0|8|1|sense REV__L1MC5a_dup506|chr1:96789720-96790659:-|3.828095617933089|0.2892202889229892|3.73|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 514.8216552734375 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 62.837 1 66.093 65.593 66.593 3.2558 0 0 0 0.40625 1 14867 14867 2.3027 0.24298 1 + 39550 27162 25024 25035 44965 44965 0.05234046822874916 RWCHLWWN 8 Unmodified _RWCHLWWN_ 0 0 0 REV__L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|1|1|sense REV__L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 600.77978515625 2 600.779628 1199.5447 NaN NaN NaN NaN NaN NaN NaN 23.296 1 26.939 26.439 27.439 3.6432 0 0 0 0.40746 1 2517 2517 0.69038 0 1 + 39551 24504 25025 25036 44966 44966 -0.047088220377645484 RWCHLWWN 8 Unmodified _RWCHLWWN_ 0 0 0 REV__L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|1|1|sense REV__L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 600.7811279296875 2 600.779628 1199.5447 NaN NaN NaN NaN NaN NaN NaN 26.376 1 30.01 29.51 30.51 3.6332 0 0 0 0.40746 1 3349 3349 0.69038 0.088878 1 + 39552 24504 25025 25036 44967 44967 -0.047088220377645484 RWCHLWWN 8 Unmodified _RWCHLWWN_ 0 0 0 REV__L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|1|1|sense REV__L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 600.77978515625 2 600.779628 1199.5447 NaN NaN NaN NaN NaN NaN NaN 115.57 1 119.21 118.71 119.71 3.6433 0 0 0 0.40746 1 27503 27503 0.69038 0.088878 1 + 39553 24504 25025 25036 44968 44968 -0.047088220377645484 RWDNPFHL 8 Unmodified _RWDNPFHL_ 0 0 0 REV__L1MB3_dup12291|chr13:21318373-21319017:+|1.0969861595837391|0.0086755003373138|6.98|151.0|36|2|anti-sense REV__L1MB3_dup12291|chr13:21318373-21319017:+|1.0969861595837391|0.0086755003373138|6.98|151.0|36|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.7705688476562 2 542.769783 1083.52501 0.37318 0.00020255 -0.19399 -0.00010529 0.17919 9.7257E-05 542.7697349082008 93.785 0.11367 93.785 93.713 93.827 0 14 9 3 0 0 0 0.82752 1 22736 22736 0.79363 0 1 434430 + 39554 25809 25026 25037 44969 44969 -0.01340874776860801 RWDPYWGF 8 Unmodified _RWDPYWGF_ 0 0 0 ENST00000478241.6_2_12:56224362-56224512:+|nuORF ENST00000478241.6_2_12:56224362-56224512:+|nuORF ENST00000478241.6_2_12:56224362-56224512:+|nuORF MSMS UPN47_class_I_Rep_3 4 563.7567138671875 2 563.758884 1125.50321 NaN NaN NaN NaN NaN NaN NaN 46.857 1 50.1 49.6 50.6 3.2439 0 0 0 0.40738 1 10063 10063 0.79363 0.10326 1 39555 6979 25027 25038 44970 44970 -0.054516795254585304 RWDYVKKPN 9 Unmodified _RWDYVKKPN_ 0 0 0 L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|129|3|sense L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|129|3|sense L1PA7_dup4167|chr5:50386906-50393119:+|1.3821773675854772|0.0232781690662855|5.89|150.0|129|3|sense MSMS UPN48_class_I_Rep_3 7 603.3267822265625 2 603.324922 1204.63529 NaN NaN NaN NaN NaN NaN NaN 85.92 1 89.69 89.19 90.19 3.7701 0 0 0 0.4007 1 20392 20392 0.52476 0.066424 1 39556 14819 25028 25039 44971 44971 0.04115925491510097 RWEDITAMSVT 11 Unmodified _RWEDITAMSVT_ 0 0 0 ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF ENST00000274712.7_1_5:140080440-140083534:+|nuORF MSMS UPN48_class_I_Rep_1 5 436.8795166015625 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 77.151 1 80.661 80.161 81.161 3.5102 0 0 0 0.38417 1 18346 18346 0.50596 0.23694 1 39557 6019 25029 25040 44972 44972 -0.023517828964941145 RWEEGTFGVLD 11 Unmodified _RWEEGTFGVLD_ 0 0 0 HERVL66-int_dup18|chr4:451746-453531:+|1.991430211987746|0.4109030204960169|2.28|149.0|11|1|sense HERVL66-int_dup18|chr4:451746-453531:+|1.991430211987746|0.4109030204960169|2.28|149.0|11|1|sense HERVL66-int_dup18|chr4:451746-453531:+|1.991430211987746|0.4109030204960169|2.28|149.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 436.879150390625 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 99.351 1 103.14 102.64 103.64 3.7926 0 0 0 0.38417 1 24572 24572 0.50596 0.051438 1 39558 8400 25030 25041 44973 44973 -0.026887096787959308 RWEMWLAF 8 Unmodified _RWEMWLAF_ 0 0 0 REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF MSMS UPN48_class_I_Rep_2 6 569.779296875 2 569.778762 1137.54297 NaN NaN NaN NaN NaN NaN NaN 55.9 1 59.455 58.955 59.955 3.5559 0 0 0 0.40581 1 11956 11956 2.8892 0.58649 1 + 39559 21811 25031 25042 44974 44974 -0.020298758463695776 RWEPEYEQ 8 Unmodified _RWEPEYEQ_ 0 0 0 REV__LTR10A_dup223|chr12:132095737-132096306:+|1.2297619971334832|0.07258999357036|4.08|151.0|41|3|anti-sense REV__LTR10A_dup223|chr12:132095737-132096306:+|1.2297619971334832|0.07258999357036|4.08|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 568.75634765625 2 568.753995 1135.49344 NaN NaN NaN NaN NaN NaN NaN 25.264 1 28.747 28.247 29.247 3.483 0 0 0 0.40625 1 3481 3481 2.3027 0 1 + 39560 30781 25032 25043 44975 44975 -0.06888912321483076 RWEVVLHF 8 Unmodified _RWEVVLHF_ 0 0 0 ENSG00000213780|ENST00000259895|GTF2H4;nc|ENSG00000213780|Q92759-2|GTF2H4;ENST00000487746.1_1_6:30877224-30879547:+|nuORF;ENST00000477288.5_1_6:30876177-30879964:+|nuORF ENSG00000213780|ENST00000259895|GTF2H4 ENSG00000213780|ENST00000259895|GTF2H4 MSMS UPN48_class_I_Rep_1 5 543.29833984375 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 33.053 1 36.58 36.08 37.08 3.5266 0 0 0 0.40738 1 5105 5105 0.79363 0 1 39561 5602 25033 25044 44976 44976 0.04289172779635919 RWFPFHHH 8 Unmodified _RWFPFHHH_ 0 0 0 REV__ENST00000343200.9_2_5:82837985-82838039:+|nuORF REV__ENST00000343200.9_2_5:82837985-82838039:+|nuORF MSMS UPN47_class_I_Rep_3 4 582.2858276367188 2 582.285934 1162.55732 NaN NaN NaN NaN NaN NaN NaN 33.187 1 36.473 35.973 36.973 3.2867 0 0 0 0.40798 1 5884 5884 0 0 1 + 39562 21834 25034 25045 44977 44977 -0.017460425832041437 RWFSPDVLP 9 Unmodified _RWFSPDVLP_ 0 0 0 REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF MSMS UPN48_class_I_Rep_3 7 558.7940673828125 2 558.795466 1115.57638 NaN NaN NaN NaN NaN NaN NaN 44.28 1 47.917 47.417 48.417 3.6372 0 0 0 0.39518 1 8344 8344 1.8442 0.36234 1 + 39563 22788 25035 25046 44978 44978 0.023214491971884854 RWGKIQNL 8 Unmodified _RWGKIQNL_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MULTI-SECPEP UPN46_class_I_Rep_3 1 508.2118225097656 2 507.795801 1013.57705 0.30713 0.00015596 0.44931 0.00022816 0.75644 0.00038412 507.79630423971753 82.492 0.05703 82.492 82.448 82.505 0 6 4 2 0 0 0 0.72333 1 19545 19545 15.847 1.9411 1 81827 + 39564 19669 25036 25047 44979 44979 0.07080288636871046 RWGKIQNL 8 Unmodified _RWGKIQNL_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MULTI-MSMS UPN47_class_I_Rep_3 4 507.8350524902344 2 507.795801 1013.57705 0.27863 0.00014149 -1.6277 -0.00082654 -1.3491 -0.00068505 507.79489853710993 78.257 0.15195 81.539 81.516 81.668 3.2816 18 15 2 0 0 0 0.82752 1 19535 19535 15.847 1.9411 1 58177 + 39565 19669 25036 25047 44980 44980 0.07080288636871046 RWGKIQNL 8 Unmodified _RWGKIQNL_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MSMS UPN47_class_I_Rep_3 4 507.7947998046875 2 507.795801 1013.57705 NaN NaN NaN NaN NaN NaN NaN 77.207 1 80.476 79.976 80.976 3.269 0 0 0 0.35715 1 19217 19217 20.454 2.3073 1 + 39566 19669 25036 25047 44981 44981 0.07080288636871046 RWGKIQNL 8 Unmodified _RWGKIQNL_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MSMS UPN47_class_I_Rep_3 4 507.7950439453125 2 507.795801 1013.57705 NaN NaN NaN NaN NaN NaN NaN 77.844 1 81.126 80.626 81.626 3.2816 0 0 0 0.28616 1 19394 19394 34.102 3.4659 1 + 39567 19669 25036 25047 44982 44982 0.07080288636871046 RWGKIQNL 8 Unmodified _RWGKIQNL_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.795801 1013.57705 0.28072 0.00014255 -2.634 -0.0013375 -2.3533 -0.001195 507.79396243754024 79.084 0.034851 82.379 82.358 82.393 3.295 -0.056815 -0.0010969 NaN 15.847 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 14913 + 39568 19669 25036 25047 0.07080288636871046 RWGPPWPV 8 Unmodified _RWGPPWPV_ 0 0 0 ENST00000568731.1_1_16:50335583-50335724:+|nuORF ENST00000568731.1_1_16:50335583-50335724:+|nuORF ENST00000568731.1_1_16:50335583-50335724:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.76678466796875 2 497.766512 993.518471 NaN NaN NaN NaN NaN NaN NaN 39.564 1 43.068 42.568 43.568 3.5048 0 0 0 0.40738 1 7002 7002 0.79363 0 1 39569 7504 25037 25048 44983 44983 0.02145232062400737 RWGQFVNL 8 Unmodified _RWGQFVNL_ 0 0 0 L1ME3A_dup15038|chr20:32492133-32492591:+|1.2167175017279328|0.009716842470798|6.97|151.0|9|2|sense L1ME3A_dup15038|chr20:32492133-32492591:+|1.2167175017279328|0.009716842470798|6.97|151.0|9|2|sense L1ME3A_dup15038|chr20:32492133-32492591:+|1.2167175017279328|0.009716842470798|6.97|151.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.2735290527344 2 510.274701 1018.53485 0.31872 0.00016263 -1.5643 -0.00079821 -1.2456 -0.00063558 510.2737245112035 88.204 0.15076 88.204 88.06 88.21 0 18 11 2 0 0 0 0.82752 1 21161 21161 11.64 1.5664 1 294060 39570 12654 25038 25049 44984 44984 0.026323132285028805 RWGWGAVF 8 Unmodified _RWGWGAVF_ 0 0 0 REV__MER20_dup14151|chr17:49712242-49712444:-|3.2561121464718634|0.3691937287963718|3.14|151.0|13|2|anti-sense REV__MER20_dup14151|chr17:49712242-49712444:-|3.2561121464718634|0.3691937287963718|3.14|151.0|13|2|anti-sense MSMS UPN46_class_I_Rep_3 1 489.7523498535156 2 489.750862 977.487171 NaN NaN NaN NaN NaN NaN NaN 73.505 1 73.505 73.005 74.005 0 0 0 0 0.4032 1 17040 17040 6.3541 0.59368 1 + 39571 31152 25039 25050 44985 44985 -0.002473409716799324 RWHHVAAF 8 Unmodified _RWHHVAAF_ 0 0 0 MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 512.2662963867188 2 512.26721 1022.51987 0.23484 0.0001203 -1.8173 -0.00093097 -1.5825 -0.00081067 512.2664089367374 49.761 0.43816 53.285 53.047 53.485 3.5246 35 27 2 0 0 0 0.82752 2 10083 10083;10130 13.508 9.3474 1 120930 39572 16264 25040 25051 44986;44987 44986 0.009508661511745231 RWHHVAAF 8 Unmodified _RWHHVAAF_ 0 0 0 MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_1 5 512.2664794921875 2 512.26721 1022.51987 NaN NaN NaN NaN NaN NaN NaN 50.09 1 53.614 53.114 54.114 3.5246 0 0 0 0.39624 1 10193 10193 9.3474 0 1 39573 16264 25040 25051 44988 44988 0.009508661511745231 RWHHVAAF 8 Unmodified _RWHHVAAF_ 0 0 0 MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 512.2665405273438 2 512.26721 1022.51987 0.20221 0.00010359 -1.3528 -0.00069299 -1.1506 -0.00058941 512.2663916175853 49.67 0.53515 53.294 53.099 53.634 3.6245 58 36 2 0 0 0 0.82752 2 9986 9986;10034 14.582 3.7578 1 126170 39574 16264 25040 25051 44989;44990 44989 0.009508661511745231 RWIGPHAQ 8 Unmodified _RWIGPHAQ_ 0 0 0 REV__ENST00000602351.5_1_19:49645338-49651464:+|nuORF REV__ENST00000602351.5_1_19:49645338-49651464:+|nuORF MSMS UPN47_class_I_Rep_1 2 482.75885009765625 2 482.759218 963.503883 NaN NaN NaN NaN NaN NaN NaN 40.873 1 44.545 44.045 45.045 3.6719 0 0 0 0.40625 1 8151 8151 2.3027 0 1 + 39575 23216 25041 25052 44991 44991 0.02067159914270178 RWIKDEPL 8 Unmodified _RWIKDEPL_ 0 0 0 REV__Tigger3b_dup3539|chr9:37229326-37230423:-|1.1476593071100831|0.0213656421462126|5.75|149.0|32|3|sense REV__Tigger3b_dup3539|chr9:37229326-37230423:-|1.1476593071100831|0.0213656421462126|5.75|149.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 528.740234375 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 26.031 1 29.378 28.878 29.878 3.3478 0 0 0 0.40746 1 3749 3749 0.69038 0 1 + 39576 32745 25042 25053 44992 44992 0.050814491971550524 RWKFKLFLK 9 Unmodified _RWKFKLFLK_ 0 0 0 REV__L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|51|3|sense REV__L1MD1_dup2867|chr7:45045842-45047378:+|5.349516559821536|0.194934332687549|4.78|151.0|51|3|sense MSMS UPN46_class_I_Rep_3 1 633.3972778320312 2 633.397693 1264.78083 NaN NaN NaN NaN NaN NaN NaN 64.623 1 64.623 64.123 65.123 0 0 0 0 0.4007 1 14557 14557 0.52476 0 1 + 39577 27312 25043 25054 44993 44993 0.15903433078347007 RWKIGDIP 8 Unmodified _RWKIGDIP_ 0 0 0 REV__MER6A_dup358|chr5:61341001-61341583:+|1.166186917948392|0.051254557236695|4.51|151.0|21|3|sense REV__MER6A_dup358|chr5:61341001-61341583:+|1.166186917948392|0.051254557236695|4.51|151.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 492.78460693359375 2 492.784902 983.55525 NaN NaN NaN NaN NaN NaN NaN 69.075 1 72.442 71.942 72.942 3.3678 0 0 0 0.40625 1 16716 16716 2.3027 0 1 + 39578 31546 25044 25055 44994 44994 0.06281483888312778 RWKKIKLR 8 Unmodified _RWKKIKLR_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|2|1|sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 564.881103515625 2 564.379835 1126.74512 0.4364 0.00024629 -1.0913 -0.00061593 -0.65494 -0.00036963 564.3789813788502 109.83 0.17526 113.5 113.46 113.64 3.67 26 23 2 0 0 0 0.72333 1 26102 26102 0.69038 0 1 279750 + 39579 30053 25045 25056 44995 44995 0.18681395621342745 RWKLGGLL 8 Unmodified _RWKLGGLL_ 0 0 0 REV__ENSG00000185915|ENST00000379499|KLHL34 REV__ENSG00000185915|ENST00000379499|KLHL34 MSMS UPN47_class_I_Rep_3 4 471.7958068847656 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 60.957 1 64.122 63.622 64.622 3.1651 0 0 0 0.40581 1 14346 14346 2.8892 0 1 + 39580 20867 25046 25057 44996 44996 0.10794378130617588 RWKRRRRRRLP 11 Unmodified _RWKRRRRRRLP_ 0 0 0 ENST00000326402.8_2_11:92930946-92931072:-|nuORF ENST00000326402.8_2_11:92930946-92931072:-|nuORF ENST00000326402.8_2_11:92930946-92931072:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 409.1107482910156 4 409.764638 1635.02945 -0.14974 -6.1358E-05 -0.19346 -7.9273E-05 -0.3432 -0.00014063 410.01576816785075 48.93 1.4499 52.454 51.973 53.423 3.5239 287 100 5 0 0 0 22.551 1 9690 9690 0.08335 0.08335 1 910740 39581 6167 25047 25058 44997 44997 0.2373321415841474 RWKRRRRRRLP 11 Unmodified _RWKRRRRRRLP_ 0 0 0 ENST00000326402.8_2_11:92930946-92931072:-|nuORF ENST00000326402.8_2_11:92930946-92931072:-|nuORF ENST00000326402.8_2_11:92930946-92931072:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 4 409.764638 1635.02945 0.0022191 9.0931E-07 -0.078032 -3.1975E-05 -0.075813 -3.1066E-05 409.76487294928745 49.015 1.5212 52.644 51.903 53.424 3.6291 0.095463 7.0518E-05 NaN 0.08335 337 112 4 NaN NaN NaN NaN 0 NaN NaN 0 633350 39582 6167 25047 25058 0.2373321415841474 RWKRYRGR 8 Unmodified _RWKRYRGR_ 0 0 0 ENST00000377084.3_1_13:84455547-84455634:-|nuORF ENST00000377084.3_1_13:84455547-84455634:-|nuORF ENST00000377084.3_1_13:84455547-84455634:-|nuORF MSMS UPN47_class_I_Rep_2 3 589.3432006835938 2 589.344315 1176.67408 NaN NaN NaN NaN NaN NaN NaN 82.513 1 85.911 85.411 86.411 3.3984 0 0 0 0.40746 1 20567 20567 0.69038 0 1 39583 6455 25048 25059 44998 44998 0.09280695636562086 RWKRYRGRL 9 Unmodified _RWKRYRGRL_ 0 0 0 ENST00000377084.3_1_13:84455547-84455634:-|nuORF ENST00000377084.3_1_13:84455547-84455634:-|nuORF ENST00000377084.3_1_13:84455547-84455634:-|nuORF MSMS UPN48_class_I_Rep_2 6 645.8884887695312 2 645.886347 1289.75814 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.68 114.18 115.18 3.669 0 0 0 0.4007 1 26402 26402 0.52476 0 1 39584 6455 25049 25060 44999 44999 0.12485226733451782 RWKVCLSVP 9 Unmodified _RWKVCLSVP_ 0 0 0 L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|115|3|anti-sense L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|115|3|anti-sense L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_1 5 544.3069458007812 2 544.307687 1086.60082 NaN NaN NaN NaN NaN NaN NaN 67.591 1 71.043 70.543 71.543 3.4516 0 0 0 0.39518 1 15547 15547 1.8442 0.36234 1 39585 9524 25050 25061 45000 45000 0.06098386079042939 RWKWTEFD 8 Unmodified _RWKWTEFD_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-2|CLCC1 REV__nc|ENSG00000121940|Q96S66-2|CLCC1 MSMS UPN48_class_I_Rep_3 7 584.28173828125 2 584.282723 1166.55089 NaN NaN NaN NaN NaN NaN NaN 24.124 1 27.893 27.393 28.393 3.769 0 0 0 0.40746 1 2748 2748 0.69038 0.088878 1 + 39586 18736 25051 25062 45001 45001 -0.0257202532525298 RWLLIYLHGI 10 Unmodified _RWLLIYLHGI_ 0 0 0 REV__L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|68|2|anti-sense REV__L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|68|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 641.8825073242188 2 642.384783 1282.75501 0.6564 0.00042166 -1.397 -0.00089741 -0.7406 -0.00047575 642.3838953996644 87.932 0.16649 91.742 91.674 91.841 3.8104 27 21 2 0 0 0 0.84575 1 20880 20880 1.6526 0 1 143910 + 39587 26347 25052 25063 45002 45002 0.1249453883606293 RWLLTLLLHF 10 Unmodified _RWLLTLLLHF_ 0 0 0 REV__L1MC3_dup11823|chr17:75357235-75357518:+|1.6636043680992894|0.0049003425218988|8.41|151.0|19|2|anti-sense REV__L1MC3_dup11823|chr17:75357235-75357518:+|1.6636043680992894|0.0049003425218988|8.41|151.0|19|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 437.6022033691406 3 437.936047 1310.78631 0.056603 2.4788E-05 1.5282 0.00066926 1.5848 0.00069405 437.93663414737716 48.282 0.3259 51.916 51.721 52.047 3.6339 30 20 2 0 0 0 0.84575 1 9564 9564 0.77653 0.078866 1 122800 + 39588 26712 25053 25064 45003 45003 0.14335111870173023 RWLLTLLLHF 10 Unmodified _RWLLTLLLHF_ 0 0 0 REV__L1MC3_dup11823|chr17:75357235-75357518:+|1.6636043680992894|0.0049003425218988|8.41|151.0|19|2|anti-sense REV__L1MC3_dup11823|chr17:75357235-75357518:+|1.6636043680992894|0.0049003425218988|8.41|151.0|19|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 437.936047 1310.78631 -0.38377 -0.00016807 -0.93882 -0.00041114 -1.3226 -0.00057921 437.93689546659346 48.906 0.11405 52.253 52.212 52.326 3.3465 0.16827 -0.003133 NaN 0.77653 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 23714 + 39589 26712 25053 25064 0.14335111870173023 RWLVRFKTIFK 11 Unmodified _RWLVRFKTIFK_ 0 0 0 nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B nc|ENSG00000185518|Q7L1I2-2|SV2B MULTI-MSMS UPN48_class_I_Rep_2 6 498.6411437988281 3 498.641634 1492.90307 0.406 0.00020245 0.029187 1.4554E-05 0.43519 0.000217 498.64153689547544 55.357 1.7274 58.913 58.152 59.88 3.5559 159 113 3 0 0 0 0.68478 1 11841 11841 0.094841 0 1 260670 39590 5106 25054 25065 45004 45004 0.17633850089919179 RWMLRRIF 8 Unmodified _RWMLRRIF_ 0 0 0 REV__AluJb_dup5511|chr1:77703871-77704129:+|1.0782552409441677|0.3031601856232501|1.83|151.0|4|1|sense REV__AluJb_dup5511|chr1:77703871-77704129:+|1.0782552409441677|0.3031601856232501|1.83|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.3428955078125 2 589.342395 1176.67024 0.50745 0.00029906 0.94342 0.000556 1.4509 0.00085506 589.3428295711308 97.092 0.36173 100.51 100.42 100.78 3.414 72 48 2 0 0 0 0.82752 1 24120 24120 0.69038 0.69038 1 160540 + 39591 16954 25055 25066 45005 45005 0.088968898184703 RWMQKDTF 8 Unmodified _RWMQKDTF_ 0 0 0 REV__L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|113|3|sense REV__L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|113|3|sense MSMS UPN47_class_I_Rep_1 2 556.2702026367188 2 556.271301 1110.52805 NaN NaN NaN NaN NaN NaN NaN 81.599 1 85.111 84.611 85.611 3.5122 0 0 0 0.40746 1 20365 20365 0.69038 0 1 + 39592 29849 25056 25067 45006 45006 -0.022793677143909008 RWNLWIIWQFY 11 Unmodified _RWNLWIIWQFY_ 0 0 0 L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.776123046875 4 406.96604 1623.83505 -0.12237 -4.9802E-05 -3.7206 -0.0015142 -3.843 -0.001564 407.2154659561655 33.304 0.22263 33.304 33.266 33.489 0 23 16 2 0 0 0 22.551 1 5825 5825 0.094841 0.094841 1 78521 39593 10240 25057 25068 45007 45007 0.04808980439270272 RWNLWIIWQFY 11 Unmodified _RWNLWIIWQFY_ 0 0 0 L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 4 406.96604 1623.83505 -0.069981 -2.848E-05 -4.9261 -0.0020047 -4.996 -0.0020332 406.9640434695322 29.417 0.23383 32.967 32.867 33.101 3.5499 -0.21445 -4.5276E-05 NaN 0.094841 32 21 3 NaN NaN NaN NaN 0 NaN NaN 0 88115 39594 10240 25057 25068 0.04808980439270272 RWNLWIIWQFY 11 Unmodified _RWNLWIIWQFY_ 0 0 0 L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 4 406.96604 1623.83505 0.095686 3.8941E-05 -5.0978 -0.0020746 -5.0022 -0.0020357 406.96400990161186 29.894 0.22496 33.526 33.427 33.652 3.6316 0.34417 -0.00032493 NaN 0.094841 30 26 2 NaN NaN NaN NaN 0 NaN NaN 0 67755 39595 10240 25057 25068 0.04808980439270272 RWNLWIIWQFY 11 Unmodified _RWNLWIIWQFY_ 0 0 0 L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|38|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 4 406.96604 1623.83505 -0.0072985 -2.9702E-06 -4.7123 -0.0019178 -4.7196 -0.0019207 406.96411903249816 29.201 0.14863 32.929 32.861 33.01 3.7286 -0.25199 0.00030265 NaN 0.094841 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 95309 39596 10240 25057 25068 0.04808980439270272 RWNQSQCPST 10 Unmodified _RWNQSQCPST_ 0 0 0 L1MB3_dup13664|chr15:65476476-65477135:+|1.4825091578130998|0.0726922612023429|4.35|151.0|8|2|sense L1MB3_dup13664|chr15:65476476-65477135:+|1.4825091578130998|0.0726922612023429|4.35|151.0|8|2|sense L1MB3_dup13664|chr15:65476476-65477135:+|1.4825091578130998|0.0726922612023429|4.35|151.0|8|2|sense MSMS UPN47_class_I_Rep_2 3 603.771728515625 2 603.769654 1205.52475 NaN NaN NaN NaN NaN NaN NaN 48.737 1 52.083 51.583 52.583 3.3465 0 0 0 0.53105 1 10562 10562 1.4819 0.68827 1 39597 10345 25058 25069 45008 45008 -0.06978662559026816 RWNRKLLQVLF 11 Unmodified _RWNRKLLQVLF_ 0 0 0 REV__ENST00000256412.8_1_8:24241812-24241986:+|nuORF REV__ENST00000256412.8_1_8:24241812-24241986:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 491.6335144042969 3 491.633139 1471.87759 0.26656 0.00013105 0.81229 0.00039935 1.0788 0.0005304 491.63349102529287 106.54 0.18572 110.23 110.18 110.37 3.6834 34 25 2 0 0 0 0.68478 1 25187 25187 0.094841 0 1 128200 + 39598 21535 25059 25070 45009 45009 0.16052375567483068 RWPFPGFW 8 Unmodified _RWPFPGFW_ 0 0 0 ENST00000454741.5_1_22:28395954-28396164:+|nuORF ENST00000454741.5_1_22:28395954-28396164:+|nuORF ENST00000454741.5_1_22:28395954-28396164:+|nuORF MSMS UPN47_class_I_Rep_3 4 546.7745971679688 2 546.774337 1091.53412 NaN NaN NaN NaN NaN NaN NaN 26.873 1 30.216 29.716 30.716 3.3422 0 0 0 0.40738 1 3998 3998 0.79363 0.10326 1 39599 6828 25060 25071 45010 45010 -0.007984814205201474 RWPPERRL 8 Unmodified _RWPPERRL_ 0 0 0 REV__ENST00000334176.3_1_19:33166647-33167097:+|nuORF REV__ENST00000334176.3_1_19:33166647-33167097:+|nuORF MSMS UPN48_class_I_Rep_1 5 555.3197021484375 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 97.379 1 100.99 100.49 101.49 3.6088 0 0 0 0.40746 1 23490 23490 0.69038 0 1 + 39600 21788 25061 25072 45011 45011 0.07542782276777871 RWPTRQGQE 9 Unmodified _RWPTRQGQE_ 0 0 0 L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|1|1|sense L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|1|1|sense L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 579.7368774414062 2 579.294153 1156.57375 NaN NaN NaN NaN NaN NaN NaN 72.538 1 76.075 75.575 76.575 3.5373 0 0 0 0.39598 1 16913 16913 1.6526 0 1 39601 14013 25062 25073 45012 45012 0.0017299379221640265 RWQAGTFI 8 Unmodified _RWQAGTFI_ 0 0 0 L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|208|1|anti-sense L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|208|1|anti-sense L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|208|1|anti-sense MSMS UPN47_class_I_Rep_3 4 489.7616882324219 2 489.761426 977.5083 NaN NaN NaN NaN NaN NaN NaN 59.928 1 63.094 62.594 63.594 3.1651 0 0 0 0.40625 1 14036 14036 2.3027 0 1 39602 14762 25063 25074 45013 45013 0.018646243371676974 RWQAGTFI 8 Unmodified _RWQAGTFI_ 0 0 0 L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|208|1|anti-sense L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|208|1|anti-sense L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|208|1|anti-sense MSMS UPN47_class_I_Rep_3 4 489.76068115234375 2 489.761426 977.5083 NaN NaN NaN NaN NaN NaN NaN 60.036 1 63.201 62.701 63.701 3.1651 0 0 0 0.40625 1 14069 14069 2.3027 0 1 39603 14762 25063 25074 45014 45014 0.018646243371676974 RWQFKTLF 8 Unmodified _RWQFKTLF_ 0 0 0 L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|88|2|anti-sense L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|88|2|anti-sense L1MA3_dup6467|chr11:73113592-73115350:-|9.592820044763211|0.0752923328867727|6.99|151.0|88|2|anti-sense MSMS UPN48_class_I_Rep_1 5 563.3132934570312 2 563.313826 1124.6131 NaN NaN NaN NaN NaN NaN NaN 87.224 1 90.843 90.343 91.343 3.6187 0 0 0 0.40746 1 20899 20899 0.69038 0 1 39604 9597 25064 25075 45015 45015 0.05577745813729962 RWQHCWWP 8 Unmodified _RWQHCWWP_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|370|3|anti-sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|370|3|anti-sense MSMS UPN48_class_I_Rep_3 7 599.770751953125 2 599.771803 1197.52905 NaN NaN NaN NaN NaN NaN NaN 45.382 1 49.019 48.519 49.519 3.6369 0 0 0 0.40738 1 8683 8683 0.79363 0.19213 1 + 39605 28948 25065 25076 45016 45016 -0.0618110855480154 RWRIEHRRWCL 11 Unmodified _RWRIEHRRWCL_ 0 0 0 REV__L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|4|1|sense REV__L1MEg_dup2457|chr2:233361198-233361662:+|1.1787211238154207|0.0134525686795776|6.45|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 538.3041381835938 3 537.624761 1609.85245 -0.076241 -4.0989E-05 0.53091 0.00028543 0.45467 0.00024444 537.6252362106694 25.526 0.25282 29.276 29.104 29.356 3.7495 38 25 3 0 0 0 22.551 1 3498 3498 0 0 1 71749 + 39606 28740 25066 25077 45017 45017 0.07191997493282543 RWRKKRQR 8 Unmodified _RWRKKRQR_ 0 0 0 REV__nc|ENSG00000158987|Q8TEU7-5|RAPGEF6 REV__nc|ENSG00000158987|Q8TEU7-5|RAPGEF6 MSMS UPN46_class_I_Rep_3 1 607.3764038085938 2 607.378689 1212.74283 NaN NaN NaN NaN NaN NaN NaN 94.185 1 94.185 93.685 94.685 0 0 0 0 0.40746 1 22845 22845 0.69038 0.088878 1 + 39607 32024 25067 25078 45018 45018 0.14496359936242698 RWRKLFWRLK 10 Unmodified _RWRKLFWRLK_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MSMS UPN47_class_I_Rep_1 2 496.7969665527344 3 496.973607 1487.89899 0.28288 0.00014058 2.1825 0.0010846 2.4654 0.0012252 496.97439751225335 106.73 0.049301 110.43 110.41 110.46 3.7088 11 6 2 0 0 0 0.56444 1 26159 26159 0.69767 0.19171 1 52122 + 39608 19624 25068 25079 45019 45019 0.17455805386885004 RWRKLFWRLK 10 Unmodified _RWRKLFWRLK_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MSMS UPN48_class_I_Rep_1 5 496.97479248046875 3 496.973607 1487.89899 NaN NaN NaN NaN NaN NaN NaN 105.39 1 109.02 108.52 109.52 3.6277 0 0 0 0.53105 1 25388 25388 0.69767 0.24315 1 + 39609 19624 25068 25079 45020 45020 0.17455805386885004 RWRKLFWRLK 10 Unmodified _RWRKLFWRLK_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MATCH UPN47_class_I_Rep_2 3 3 496.973607 1487.89899 0.43787 0.00021761 1.8748 0.00093173 2.3127 0.0011493 497.3092124376683 106.71 0.032257 110.24 110.22 110.26 3.5345 -0.015874 -7.2334E-05 NaN 0.69767 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 92765 + 39610 19624 25068 25079 0.17455805386885004 RWRKLFWRLK 10 Unmodified _RWRKLFWRLK_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MATCH UPN48_class_I_Rep_3 7 3 496.973607 1487.89899 0.25341 0.00012594 2.0199 0.0010038 2.2733 0.0011298 496.9745302443815 106.61 0.17618 110.3 110.22 110.4 3.6899 0.043228 0.00014399 NaN 0.69767 43 26 3 NaN NaN NaN NaN 0 NaN NaN 0 240230 + 39611 19624 25068 25079 0.17455805386885004 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MSMS UPN48_class_I_Rep_1 5 540.31982421875 3 540.653769 1618.93948 NaN NaN NaN NaN NaN NaN NaN 98.441 1 102.05 101.55 102.55 3.6065 0 0 0 0.38417 1 23757 23757 0.08335 0.08335 1 + 39612 19624 25069 25080 45021 45021 0.15476403714978915 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-SECPEP UPN48_class_I_Rep_1 5 405.898193359375 4 405.742146 1618.93948 -0.095252 -3.8648E-05 1.0662 0.00043259 0.97091 0.00039394 405.74264210653905 35.039 0.2262 38.554 38.398 38.625 3.5144 25 21 2 0 0 0 22.551 1 5653 5653 0 0 1 43935 + 39613 19624 25069 25080 45022 45022 0.15476403714978915 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-SECPEP UPN48_class_I_Rep_1 5 405.8982849121094 4 405.742146 1618.93948 -0.096831 -3.9289E-05 0.61269 0.00024859 0.51586 0.00020931 405.9932631037298 35.33 0.10299 38.84 38.807 38.91 3.5101 12 10 2 0 0 0 22.551 1 5759 5759 0 0 1 102650 + 39614 19624 25069 25080 45023 45023 0.15476403714978915 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-SECPEP UPN48_class_I_Rep_2 6 405.89764404296875 4 405.742146 1618.93948 0.064847 2.6311E-05 1.0693 0.00043385 1.1341 0.00046016 405.7427492441884 34.717 0.055977 38.39 38.365 38.421 3.6735 11 5 3 0 0 0 22.551 1 5634 5634 0 0 1 44481 + 39615 19624 25069 25080 45024 45024 0.15476403714978915 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-SECPEP UPN48_class_I_Rep_3 7 405.8982238769531 4 405.742146 1618.93948 0.0017377 7.0507E-07 1.0695 0.00043395 1.0713 0.00043465 405.7427199553988 35.331 0.076874 39.003 38.955 39.032 3.6721 11 8 2 0 0 0 22.551 1 5704 5704 0 0 1 52708 + 39616 19624 25069 25080 45025 45025 0.15476403714978915 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MATCH UPN48_class_I_Rep_1 5 4 405.742146 1618.93948 -0.09874 -4.0063E-05 0.65386 0.0002653 0.55511 0.00022523 405.99314238098236 35.784 0.047661 39.294 39.268 39.316 3.5101 0.14564 -0.00034923 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 24740 + 39617 19624 25069 25080 0.15476403714978915 RWRKLFWRLKM 11 Unmodified _RWRKLFWRLKM_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MATCH UPN48_class_I_Rep_3 7 4 405.742146 1618.93948 0.0016028 6.5033E-07 -0.38081 -0.00015451 -0.37921 -0.00015386 405.9927232484397 35.237 0.053162 38.909 38.884 38.937 3.6721 0.034637 -0.00090956 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 30620 + 39618 19624 25069 25080 0.15476403714978915 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MULTI-MSMS UPN46_class_I_Rep_3 1 530.9849243164062 3 530.9844 1589.93137 0.33629 0.00017856 1.0153 0.0005391 1.3516 0.00071767 530.9849200060976 102.56 0.12199 102.56 102.53 102.66 0 13 12 2 0 0 0 0.68583 1 25029 25029 0 0 1 134530 + 39619 21224 25070 25081 45026 45026 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MULTI-MSMS UPN46_class_I_Rep_3 1 530.9852294921875 3 530.9844 1589.93137 0.33637 0.00017861 1.7849 0.00094778 2.1213 0.0011264 530.985089676465 102.89 0.1164 102.89 102.86 102.98 0 10 6 2 0 0 0 0.68583 1 25118 25118 0 0 1 660660 + 39620 21224 25070 25081 45027 45027 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN46_class_I_Rep_3 1 530.9849853515625 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 99.918 1 99.918 99.418 100.42 0 0 0 0 0.38417 1 24353 24353 0 0 1 + 39621 21224 25070 25081 45028 45028 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN47_class_I_Rep_1 2 530.9851684570312 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 99.147 1 102.94 102.44 103.44 3.7926 0 0 0 0.38417 1 24529 24529 0.094841 0.094841 1 + 39622 21224 25070 25081 45029 45029 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN47_class_I_Rep_3 4 530.9849243164062 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 99.223 1 102.66 102.16 103.16 3.4328 0 0 0 0.38417 1 24543 24543 0 0 1 + 39623 21224 25070 25081 45030 45030 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_1 5 530.9851684570312 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 96.882 1 100.49 99.991 100.99 3.6088 0 0 0 0.38417 1 23362 23362 0 0 1 + 39624 21224 25070 25081 45031 45031 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_1 5 530.9850463867188 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 97.177 1 100.79 100.29 101.29 3.6088 0 0 0 0.38417 1 23438 23438 0 0 1 + 39625 21224 25070 25081 45032 45032 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_1 5 530.9861450195312 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 97.389 1 101 100.5 101.5 3.6088 0 0 0 0.38417 1 23493 23493 0 0 1 + 39626 21224 25070 25081 45033 45033 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_1 5 530.9849853515625 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 98.239 1 101.85 101.35 102.35 3.6065 0 0 0 0.38417 1 23705 23705 0.094841 0 1 + 39627 21224 25070 25081 45034 45034 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_2 6 530.9851684570312 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 97.073 1 100.85 100.35 101.35 3.779 0 0 0 0.38417 1 23069 23069 0 0 1 + 39628 21224 25070 25081 45035 45035 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_2 6 530.9854125976562 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 98.035 1 101.81 101.31 102.31 3.779 0 0 0 0.38417 1 23288 23288 0 0 1 + 39629 21224 25070 25081 45036 45036 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MSMS UPN48_class_I_Rep_3 7 530.985595703125 3 530.9844 1589.93137 NaN NaN NaN NaN NaN NaN NaN 97.018 1 100.93 100.43 101.43 3.9084 0 0 0 0.38417 1 22998 22998 0 0 1 + 39630 21224 25070 25081 45037 45037 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 530.9844 1589.93137 0.33629 0.00017856 1.0153 0.0005391 1.3516 0.00071767 530.9849200060976 102.56 0.12199 102.56 102.53 102.66 0 0 0 NaN 0 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 134530 + 39631 21224 25070 25081 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 530.9844 1589.93137 0.33637 0.00017861 1.7849 0.00094778 2.1213 0.0011264 530.985089676465 102.89 0.1164 102.89 102.86 102.98 0 -0.013772 0.00077577 NaN 0 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 660660 + 39632 21224 25070 25081 0.1600026951819018 RWRMHKKKHKR 11 Unmodified _RWRMHKKKHKR_ 0 0 0 REV__ENSG00000205857|ENST00000382119|NANOGNB REV__ENSG00000205857|ENST00000382119|NANOGNB MULTI-MATCH UPN48_class_I_Rep_1 5 3 530.9844 1589.93137 0.32048 0.00017017 1.2548 0.00066628 1.5753 0.00083645 531.3193972399202 99.314 0.091286 102.92 102.88 102.97 3.6065 0.013772 -6.8729E-05 NaN 0 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 102920 + 39633 21224 25070 25081 0.1600026951819018 RWRRKVGRP 9 Unmodified _RWRRKVGRP_ 0 0 0 REV__ENST00000498253.1_1_1:174980847-174983915:-|nuORF REV__ENST00000498253.1_1_1:174980847-174983915:-|nuORF MSMS UPN48_class_I_Rep_1 5 404.2437438964844 3 404.251252 1209.73193 NaN NaN NaN NaN NaN NaN NaN 40.286 1 43.791 43.291 44.291 3.5048 0 0 0 0.39518 1 7214 7214 0.96228 0 1 + 39634 18702 25071 25082 45038 45038 0.13544957561975934 RWRRPQQV 8 Unmodified _RWRRPQQV_ 0 0 0 ENSG00000104044|ENST00000354638|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;nc|ENSG00000104044|Q04671-3|OCA2 ENSG00000104044|ENST00000354638|OCA2 ENSG00000104044|ENST00000354638|OCA2 MULTI-MSMS UPN47_class_I_Rep_2 3 563.3244018554688 2 563.323048 1124.63154 0.51917 0.00029246 2.2325 0.0012576 2.7517 0.0015501 563.3242867631016 57.616 0.12487 60.907 60.809 60.934 3.2912 14 10 2 0 0 0 0.82752 1 13275 13275 8.5933 1.304 1 74426 39635 1674 25072 25083 45039 45039 0.0742130050830383 RWRRREREWVR 11 Unmodified _RWRRREREWVR_ 0 0 0 L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 562.3349609375 3 562.317095 1683.92946 0.42738 0.00024033 -3.0727 -0.0017278 -2.6453 -0.0014875 562.6497051388922 110.53 0.057968 114.2 114.18 114.24 3.6654 10 7 2 0 0 0 22.551 1 26228 26228 0.08335 0.08335 1 97379 39636 12217 25073 25084 45040 45040 0.11484932033931727 RWRRREREWVR 11 Unmodified _RWRRREREWVR_ 0 0 0 L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 562.317095 1683.92946 0.49271 0.00027706 -3.0871 -0.0017359 -2.5944 -0.0014589 562.315618042352 110.58 0.047447 114.25 114.23 114.27 3.669 0.02561 -9.3108E-06 NaN 0.08335 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 63379 39637 12217 25073 25084 0.11484932033931727 RWRTWTHR 8 Unmodified _RWRTWTHR_ 0 0 0 MLT1H1_dup3006|chr15:63524414-63524974:-|1.2561570340750652|0.3625765071036828|1.79|149.0|26|2|anti-sense MLT1H1_dup3006|chr15:63524414-63524974:-|1.2561570340750652|0.3625765071036828|1.79|149.0|26|2|anti-sense MLT1H1_dup3006|chr15:63524414-63524974:-|1.2561570340750652|0.3625765071036828|1.79|149.0|26|2|anti-sense MSMS UPN48_class_I_Rep_1 5 599.818359375 2 599.820673 1197.62679 NaN NaN NaN NaN NaN NaN NaN 54.201 1 57.715 57.215 58.215 3.5143 0 0 0 0.40625 1 11452 11452 2.3027 0.4585 1 39638 16439 25074 25085 45041 45041 0.03588416365550984 RWRVGRWWSS 10 Unmodified _RWRVGRWWSS_ 0 0 0 REV__ENST00000380702.6_2_19:10578104-10578401:+|nuORF REV__ENST00000380702.6_2_19:10578104-10578401:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 458.57403564453125 3 459.242533 1374.70577 0.089806 4.1243E-05 -0.11051 -5.0753E-05 -0.020707 -9.5097E-06 459.2423179510174 34.564 0.087204 38.079 38.024 38.111 3.5144 12 7 2 0 0 0 0.84575 1 5534 5534 0.15932 0 1 133410 + 39639 22053 25075 25086 45042 45042 0.03340643599858595 RWRWKPLS 8 Unmodified _RWRWKPLS_ 0 0 0 L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|36|3|sense L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|36|3|sense L1PA10_dup6398|chr17:82988210-82989516:+|1.9456026242622928|0.0247813591788754|6.29|151.0|36|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 564.2763061523438 2 564.824892 1127.63523 0.50919 0.0002876 1.7119 0.00096694 2.2211 0.0012545 564.8259617512205 51.555 0.39314 54.894 54.704 55.097 3.3386 25 18 2 0 0 0 0.72333 1 11384 11384 2.3027 0.82083 1 73281 39640 13622 25076 25087 45043 45043 0.0765197028217699 RWRWWQRLLP 10 Unmodified _RWRWWQRLLP_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MSMS UPN48_class_I_Rep_3 7 499.6188659667969 3 499.617712 1495.83131 NaN NaN NaN NaN NaN NaN NaN 36.787 1 40.45 39.95 40.95 3.663 0 0 0 0.53105 1 6127 6127 0.15932 0 1 39641 4758 25077 25088 45044 45044 0.10322355456082732 RWSDGADVYG 10 Unmodified _RWSDGADVYG_ 0 0 0 REV__nc|ENSG00000159640|P12821-2|ACE REV__nc|ENSG00000159640|P12821-2|ACE MULTI-MSMS UPN48_class_I_Rep_3 7 563.2517700195312 2 563.25162 1124.48869 0.34645 0.00019514 -0.090394 -5.0915E-05 0.25606 0.00014422 563.2516091061839 42.081 0.57129 45.722 45.436 46.008 3.6415 93 58 2 0 0 0 0.56155 1 7710 7710 2.7352 0.43246 1 143770 + 39642 19869 25078 25089 45045 45045 -0.06857796464237254 RWSLIAKHLK 10 Unmodified _RWSLIAKHLK_ 0 0 0 nc|ENSG00000185697|P10243-2|MYBL1;ENSG00000185697|ENST00000522677|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 MULTI-MSMS UPN48_class_I_Rep_2 6 626.377685546875 2 626.387857 1250.76116 0.49473 0.00030989 0.96988 0.00060752 1.4646 0.00091741 626.8894784672558 105.75 0.10748 109.43 109.37 109.47 3.6834 16 13 2 0 0 0 0.56333 1 25012 25012 1.4819 0 1 169480 39643 5115 25079 25090 45046 45046 0.14581057067607617 RWSLIAKHLK 10 Unmodified _RWSLIAKHLK_ 0 0 0 nc|ENSG00000185697|P10243-2|MYBL1;ENSG00000185697|ENST00000522677|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 626.387857 1250.76116 0.60013 0.00037592 1.1829 0.00074096 1.783 0.0011169 626.889478383696 105.72 0.088921 109.42 109.36 109.44 3.702 -0.0027114 0.00017698 NaN 1.4819 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 356570 39644 5115 25079 25090 0.14581057067607617 RWSLPPPYT 9 Unmodified _RWSLPPPYT_ 0 0 0 REV__MER21C_dup5430|chr22:40427629-40428442:+|3.1646401336205328|0.1945921712832065|4.02|151.0|33|1|anti-sense REV__MER21C_dup5430|chr22:40427629-40428442:+|3.1646401336205328|0.1945921712832065|4.02|151.0|33|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.34814453125 2 558.795466 1115.57638 NaN NaN NaN NaN NaN NaN NaN 15.029 1 18.416 17.916 18.916 3.3864 0 0 0 0.4007 1 712 712 0.52476 0 1 + 39645 31246 25080 25091 45047 45047 0.023214491971884854 RWSRVKFK 8 Unmodified _RWSRVKFK_ 0 0 0 L1PA16_dup4505|chr5:69703463-69707318:+|3.4986731667898017|0.0343414585607124|6.67|147.0|163|1|anti-sense L1PA16_dup4505|chr5:69703463-69707318:+|3.4986731667898017|0.0343414585607124|6.67|147.0|163|1|anti-sense L1PA16_dup4505|chr5:69703463-69707318:+|3.4986731667898017|0.0343414585607124|6.67|147.0|163|1|anti-sense MSMS UPN48_class_I_Rep_1 5 553.8338012695312 2 553.832717 1105.65088 NaN NaN NaN NaN NaN NaN NaN 88.223 1 91.846 91.346 92.346 3.6229 0 0 0 0.40753 1 21164 21164 0.6015 0.076735 1 39646 14089 25081 25092 45048 45048 0.10228256799223345 RWSSGGSVF 9 Unmodified _RWSSGGSVF_ 0 0 0 L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|21|1|anti-sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|21|1|anti-sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|21|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 492.2989807128906 2 491.740691 981.466829 0.19959 9.8144E-05 1.5401 0.00075731 1.7396 0.00085545 491.7423450438641 42.55 0.048485 46.308 46.294 46.342 3.7579 6 4 2 0 0 0 0.12383 1 7894 7894 1.3295 0.80477 1 18558 39647 9876 25082 25093 45049 45049 -0.02464556422125952 RWSYTTLV 8 Unmodified _RWSYTTLV_ 0 0 0 REV__ENSG00000189409|ENST00000356026|MMP23B REV__ENSG00000189409|ENST00000356026|MMP23B MSMS UPN48_class_I_Rep_3 7 513.274658203125 2 513.274367 1024.53418 NaN NaN NaN NaN NaN NaN NaN 62.822 1 66.331 65.831 66.831 3.5091 0 0 0 0.40364 1 13995 13995 5.7604 0 1 + 39648 21010 25083 25094 45050 45050 0.02289473788800933 RWTKEKKRRFR 11 Unmodified _RWTKEKKRRFR_ 0 0 0 L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|41|3|sense L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|41|3|sense L1MB3_dup1719|chr2:32794107-32795531:+|1.4123720685990728|0.0291519451865139|5.6|151.0|41|3|sense MSMS UPN48_class_I_Rep_3 7 530.986083984375 3 530.986575 1589.9379 NaN NaN NaN NaN NaN NaN NaN 97.966 1 101.87 101.37 102.37 3.9022 0 0 0 0.38417 1 23211 23211 0 0 1 39649 10381 25084 25095 45051 45051 0.1665248595054436 RWTKRGRVRRS 11 Unmodified _RWTKRGRVRRS_ 0 0 0 REV__HERVP71A-int_dup186|chr15:75063945-75065588:+|1.9146800718640355|0.0337392816682721|5.83|151.0|37|3|sense REV__HERVP71A-int_dup186|chr15:75063945-75065588:+|1.9146800718640355|0.0337392816682721|5.83|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.9617004394531 3 486.62727 1456.85998 0.23372 0.00011374 0.13155 6.4014E-05 0.36527 0.00017775 486.6272456796425 99.913 0.56055 103.77 103.63 104.19 3.8537 126 79 2 0 0 0 0.68132 1 23695 23695 0.40827 0.40827 1 373760 + 39650 23927 25085 25096 45052 45052 0.149824730851833 RWVAFLLA 8 Unmodified _RWVAFLLA_ 0 0 0 L1PB3_dup155|chr1:198213262-198215368:+|1.6827978071690304|0.0242308476927236|6.12|151.0|2|1|sense L1PB3_dup155|chr1:198213262-198215368:+|1.6827978071690304|0.0242308476927236|6.12|151.0|2|1|sense L1PB3_dup155|chr1:198213262-198215368:+|1.6827978071690304|0.0242308476927236|6.12|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 488.2791442871094 2 488.292362 974.570172 NaN NaN NaN NaN NaN NaN NaN 57.505 1 61.037 60.537 61.537 3.5317 0 0 0 0.40581 1 12376 12376 2.8892 0 1 39651 15254 25086 25097 45053 45053 0.08186975756314041 RWVDHLRL 8 Unmodified _RWVDHLRL_ 0 0 0 AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|8|3|sense;AluSq2_dup26460|chr8:37894763-37895057:-|2.020025588136897|0.0248497333182618|6.34|151.0|7|2|sense;AluSz_dup56628|chr10:11229599-11229889:-|1.0521429893680538|0.0073533171820391|7.16|151.0|5|2|sense;AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|1|1|sense;AluSp_dup25372|chrX:1483354-1483658:+|1.7163052134863914|0.0066460837061087|8.01|151.0|2|1|sense;AluSz_dup75559|chr14:77522154-77522462:-|1.9455569372780277|0.0685559822231468|4.83|151.0|5|2|sense;AluSx1_dup109864|chr20:3216887-3217176:-|1.024652142490908|0.2071840214996526|2.31|151.0|1|1|sense;AluSx_dup72217|chr11:85975593-85975896:-|1.3312548589438362|0.4436696327182293|1.59|151.0|5|2|sense;AluSq2_dup50480|chr17:4445376-4445676:-|2.105164960313513|0.0097999271020774|7.75|151.0|7|2|sense AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|8|3|sense AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|8|3|sense MSMS UPN48_class_I_Rep_3 7 547.737548828125 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 19.435 1 23.057 22.557 23.557 3.6215 0 0 0 0.40625 1 1466 1466 2.3027 0.4585 1 39652 232 25087 25098 45054 45054 0.07143379902504421 RWVGPLPVE 9 Unmodified _RWVGPLPVE_ 0 0 0 ENSG00000113593|ENST00000261308|PPWD1;ENST00000508982.1_1_5:64859104-64863443:+|nuORF ENSG00000113593|ENST00000261308|PPWD1 ENSG00000113593|ENST00000261308|PPWD1 MSMS UPN47_class_I_Rep_2 3 526.8092041015625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 28.97 1 32.462 31.962 32.962 3.4923 0 0 0 0.39518 1 4573 4573 1.8442 0.19162 1 39653 2052 25088 25099 45055 45055 0.05773753059816045 RWVKRRCT 8 Unmodified _RWVKRRCT_ 0 0 0 ENSG00000124251|ENST00000372726|TP53TG5 ENSG00000124251|ENST00000372726|TP53TG5 ENSG00000124251|ENST00000372726|TP53TG5 MSMS UPN48_class_I_Rep_1 5 552.8140258789062 2 552.814002 1103.61345 NaN NaN NaN NaN NaN NaN NaN 22.861 1 26.422 25.922 26.922 3.5605 0 0 0 0.40753 1 2292 2292 0.6015 0 1 39654 2457 25089 25100 45056 45056 0.06578842261956197 RWVPGPVY 8 Unmodified _RWVPGPVY_ 0 0 0 nc|ENSG00000008130|O95544-2|NADK nc|ENSG00000008130|O95544-2|NADK nc|ENSG00000008130|O95544-2|NADK MULTI-MSMS UPN47_class_I_Rep_1 2 487.2663269042969 2 487.266345 972.518136 -0.21101 -0.00010282 0.45791 0.00022312 0.2469 0.00012031 487.26640234371143 42.45 1.6287 46.129 45.793 47.422 3.6792 175 105 3 0 0 0 0.82752 6 8649 8556;8649;8694;8739;8797;8808 20.871 0 1 142590 39655 16617 25090 25101 45057;45058;45059;45060;45061;45062 45058 0.03077812342564812 RWVPGPVY 8 Unmodified _RWVPGPVY_ 0 0 0 nc|ENSG00000008130|O95544-2|NADK nc|ENSG00000008130|O95544-2|NADK nc|ENSG00000008130|O95544-2|NADK MULTI-MSMS UPN47_class_I_Rep_2 3 487.2666015625 2 487.266345 972.518136 -0.07318 -3.5658E-05 0.045871 2.2352E-05 -0.027309 -1.3307E-05 487.2662576065727 43.025 1.044 46.383 45.976 47.02 3.358 105 70 2 0 0 0 0.82752 2 8776 8776;8949 9.3474 0 1 115540 39656 16617 25090 25101 45063;45064 45063 0.03077812342564812 RWVPGPVY 8 Unmodified _RWVPGPVY_ 0 0 0 nc|ENSG00000008130|O95544-2|NADK nc|ENSG00000008130|O95544-2|NADK nc|ENSG00000008130|O95544-2|NADK MULTI-MSMS UPN47_class_I_Rep_3 4 487.2674865722656 2 487.266345 972.518136 -0.1489 -7.2554E-05 0.066908 3.2602E-05 -0.081993 -3.9952E-05 487.2662519104286 43.282 1.2919 46.524 46.073 47.365 3.2419 130 80 2 0 0 0 0.82752 3 8866 8866;8878;8942 9.3474 0 1 100320 39657 16617 25090 25101 45065;45066;45067 45065 0.03077812342564812 RWVQPRKKN 9 Unmodified _RWVQPRKKN_ 0 0 0 REV__LTR5_Hs_dup70|chr1:246082685-246083636:+|2.093592189136825|0.0276166685307523|6.24|151.0|28|3|sense REV__LTR5_Hs_dup70|chr1:246082685-246083636:+|2.093592189136825|0.0276166685307523|6.24|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 606.361572265625 2 606.359631 1210.70471 NaN NaN NaN NaN NaN NaN NaN 40.55 1 40.55 40.05 41.05 0 0 0 0 0.4007 1 7876 7876 0.52476 0 1 + 39658 30961 25091 25102 45068 45068 0.10778429230936126 RWWCIGILCF 10 Unmodified _RWWCIGILCF_ 0 0 0 REV__L1MA4A_dup164|chr1:84223669-84225982:-|1.4859987955154208|0.0528709410785276|4.81|151.0|104|3|anti-sense REV__L1MA4A_dup164|chr1:84223669-84225982:-|1.4859987955154208|0.0528709410785276|4.81|151.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 432.8850402832031 3 432.88419 1295.63074 NaN NaN NaN NaN NaN NaN NaN 77.526 1 81.048 80.548 81.548 3.5221 0 0 0 0.53105 1 18455 18455 0.13989 0 1 + 39659 25239 25092 25103 45069 45069 -0.005249982472605552 RWWFNFFFILW 11 Unmodified _RWWFNFFFILW_ 0 0 0 REV__AluJr_dup60964|chr14:34865907-34866195:+|1.055445359241937|0.0452190156315493|4.54|151.0|16|2|anti-sense REV__AluJr_dup60964|chr14:34865907-34866195:+|1.055445359241937|0.0452190156315493|4.54|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.6854858398438 3 554.618718 1660.83433 NaN NaN NaN NaN NaN NaN NaN 39.292 1 42.957 42.457 43.457 3.6652 0 0 0 0.38417 1 7668 7668 0.094841 0.094841 1 + 39660 17047 25093 25104 45070 45070 0.030341857902158154 RWWHQSRG 8 Unmodified _RWWHQSRG_ 0 0 0 REV__ENST00000231749.7_1_3:50381259-50382562:-|nuORF REV__ENST00000231749.7_1_3:50381259-50382562:-|nuORF MSMS UPN47_class_I_Rep_2 3 556.7769775390625 2 556.778474 1111.54239 NaN NaN NaN NaN NaN NaN NaN 117.05 1 120.54 120.04 121.04 3.4891 0 0 0 0.40746 1 28594 28594 0.69038 0 1 + 39661 21495 25094 25105 45071 45071 -0.008915344512161028 RWWHSTDA 8 Unmodified _RWWHSTDA_ 0 0 0 ENST00000416284.7_1_12:62148739-62261127:-|nuORF ENST00000416284.7_1_12:62148739-62261127:-|nuORF ENST00000416284.7_1_12:62148739-62261127:-|nuORF MSMS UPN47_class_I_Rep_3 4 529.7455444335938 2 529.743765 1057.47298 NaN NaN NaN NaN NaN NaN NaN 114.68 1 118.16 117.66 118.66 3.4802 0 0 0 0.40404 1 28172 28172 5.2307 0 1 39662 6650 25095 25106 45072 45072 -0.053460381906234034 RWWLMGVHL 9 Unmodified _RWWLMGVHL_ 0 0 0 L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|70|3|sense L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|70|3|sense L1ME2z_dup1448|chr3:171780777-171782680:+|1.6563311994187508|0.0116968102463512|7.15|151.0|70|3|sense MSMS UPN48_class_I_Rep_2 6 599.3211059570312 2 599.321128 1196.6277 NaN NaN NaN NaN NaN NaN NaN 45.47 1 49.228 48.728 49.728 3.7579 0 0 0 0.40038 1 8781 8781 0.6015 0 1 39663 12548 25096 25107 45073 45073 0.037254946902749 RWWRRRWNPRL 11 Unmodified _RWWRRRWNPRL_ 0 0 0 ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF MSMS UPN47_class_I_Rep_1 2 561.3206787109375 3 561.318548 1680.93381 NaN NaN NaN NaN NaN NaN NaN 85.52 1 89.111 88.611 89.611 3.5914 0 0 0 0.38417 1 21356 21356 0 0 1 39664 6704 25097 25108 45074 45074 0.12058441247540941 RWWTWSIKEIK 11 Unmodified _RWWTWSIKEIK_ 0 0 0 REV__AluSz_dup21753|chr3:195316416-195316694:-|1.2203900739573337|0.048783292017181|4.64|151.0|2|1|sense REV__AluSz_dup21753|chr3:195316416-195316694:-|1.2203900739573337|0.048783292017181|4.64|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 511.6168212890625 3 511.617266 1531.82997 NaN NaN NaN NaN NaN NaN NaN 42.084 1 45.592 45.092 46.092 3.5079 0 0 0 0.38417 1 7744 7744 0.094841 0 1 + 39665 17198 25098 25109 45075 45075 0.08532676576646736 RWYLTSYFC 9 Unmodified _RWYLTSYFC_ 0 0 0 REV__L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|39|2|sense REV__L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|39|2|sense MSMS UPN48_class_I_Rep_2 6 619.7847900390625 2 619.786784 1237.55902 NaN NaN NaN NaN NaN NaN NaN 23.504 1 27.144 26.644 27.644 3.6397 0 0 0 0.39428 1 2575 2575 2.0598 0 1 + 39666 27891 25099 25110 45076 45076 -0.05026214400140816 RWYRIVLSI 9 Unmodified _RWYRIVLSI_ 0 0 0 L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|47|2|anti-sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|47|2|anti-sense L1PB1_dup11803|chr17:36997307-36998232:+|1.6107870722887274|0.0834210099563052|4.27|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_1 5 402.574951171875 3 402.576631 1204.70806 NaN NaN NaN NaN NaN NaN NaN 94.751 1 98.368 97.868 98.868 3.6167 0 0 0 0.3979 1 22807 22807 1.1933 0.12188 1 39667 15024 25100 25111 45077 45077 0.11389679284934573 RYAAHVPV 8 Unmodified _RYAAHVPV_ 0 0 0 ENST00000463325.5_1_22:51222399-51223715:+|nuORF ENST00000463325.5_1_22:51222399-51223715:+|nuORF ENST00000463325.5_1_22:51222399-51223715:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 456.75537109375 2 456.756144 911.497735 -0.161 -7.3538E-05 -0.88759 -0.00040541 -1.0486 -0.00047895 456.75548039269535 65.792 0.81853 69.051 68.608 69.427 3.2588 92 50 2 0 0 0 0.82752 1 15861 15861 2.5775 0 1 184150 39668 6875 25101 25112 45078 45078 0.038446416827468965 RYAEIVHL 8 Unmodified _RYAEIVHL_ 0 0 0 ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000147416|ENST00000276390|ATP6V1B2 ENST00000523482.5_1_8:20054917-20070443:+|nuORF ENST00000523482.5_1_8:20054917-20070443:+|nuORF MSMS UPN47_class_I_Rep_3 4 500.7822570800781 2 500.782359 999.550165 NaN NaN NaN NaN NaN NaN NaN 111.5 1 115.02 114.52 115.52 3.5207 0 0 0 0.40738 1 27371 27371 0.79363 0 1 39669 3474 25102 25113 45079 45079 0.05037180025692578 RYAIPLIIR 9 Unmodified _RYAIPLIIR_ 0 0 0 L1ME2_dup12313|chr20:47289137-47289942:+|2.590151715641644|0.1408851460231928|4.2|151.0|11|2|sense L1ME2_dup12313|chr20:47289137-47289942:+|2.590151715641644|0.1408851460231928|4.2|151.0|11|2|sense L1ME2_dup12313|chr20:47289137-47289942:+|2.590151715641644|0.1408851460231928|4.2|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.8578491210938 2 557.858401 1113.70225 0.60486 0.00033743 -0.35328 -0.00019708 0.25158 0.00014034 557.8581954547138 63.021 0.39959 66.484 66.261 66.661 3.4625 29 23 2 0 0 0 0.42249 1 14152 14152 6.7232 0 1 64582 39670 12472 25103 25114 45080 45080 0.14994580773281996 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(42)EQL 0 0 1 ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18 ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENST00000411618.1_1_9:30799684-30799825:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 584.294921875 2 584.294973 1166.57539 0.42029 0.00024557 -0.067984 -3.9723E-05 0.35231 0.00020585 584.2948394614117 41.449 0.65388 45.2 44.956 45.61 3.7508 123 73 2 0 0 0 0.065535 1 7584 7584 42.312 22.951 1 199300 39671 1959 25104 25115 45081 45081 60 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ 0 0 1 ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18 ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENST00000411618.1_1_9:30799684-30799825:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 584.294973 1166.57539 0.42507 0.00024836 -0.10335 -6.0385E-05 0.32172 0.00018798 584.294928747806 41.82 0.54725 45.328 45.075 45.623 3.5079 0.079232 -2.2428E-05 NaN 42.312 72 55 2 NaN NaN NaN NaN 0 NaN NaN 0 281810 39672 1959 25104 25115 60 -0.0012313323402395326 RYAPNTRAPRY 11 Unmodified _RYAPNTRAPRY_ 0 0 0 L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|15|2|sense L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|15|2|sense L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 455.2561950683594 3 455.577582 1363.71092 NaN NaN NaN NaN NaN NaN NaN 28.846 1 32.396 31.896 32.896 3.5499 0 0 0 0.38417 1 3922 3922 1.3296 0.63198 1 39673 9397 25105 25116 45082 45082 0.04360902671783151 RYAQNVAFF 9 Unmodified _RYAQNVAFF_ 0 0 0 ENSG00000169740|ENST00000374433|ZNF32 ENSG00000169740|ENST00000374433|ZNF32 ENSG00000169740|ENST00000374433|ZNF32 MULTI-SECPEP UPN48_class_I_Rep_3 7 558.3174438476562 2 558.285266 1114.55598 0.26184 0.00014618 -0.021405 -1.195E-05 0.24044 0.00013423 558.2851962418029 54.123 0.51832 57.693 57.381 57.899 3.5694 62 33 2 0 0 0 0.12034 1 11379 11379 7.2892 2.0586 1 126140 39674 4436 25106 25117 45083 45083 0.003282785373585284 RYARKKHA 8 Unmodified _RYARKKHA_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MSMS UPN47_class_I_Rep_2 3 515.30712890625 2 515.306867 1028.59918 NaN NaN NaN NaN NaN NaN NaN 76.098 1 79.419 78.919 79.919 3.3216 0 0 0 0.40746 1 18823 18823 0.69038 0.088878 1 39675 3599 25107 25118 45084 45084 0.08602513105302023 RYARRRYYRLL 11 Unmodified _RYARRRYYRLL_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MSMS UPN48_class_I_Rep_3 7 529.3128662109375 3 529.311059 1584.91135 NaN NaN NaN NaN NaN NaN NaN 113.82 1 117.47 116.97 117.97 3.6511 0 0 0 0.38417 1 27075 27075 0.094841 0.094841 1 39676 4754 25108 25119 45085 45085 0.14228797059263343 RYAYVIPN 8 Unmodified _RYAYVIPN_ 0 0 0 REV__ENST00000582124.1_1_17:15877924-15878653:+|nuORF REV__ENST00000582124.1_1_17:15877924-15878653:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 498.2696838378906 2 498.269084 994.523616 0.25158 0.00012535 1.6012 0.00079784 1.8528 0.00092319 498.26975845297943 67.379 0.18756 70.83 70.77 70.957 3.4516 16 12 2 0 0 0 0.82752 1 15489 15489 2.3027 0 1 68408 + 39677 20362 25109 25120 45086 45086 0.02613491134366086 RYCMKFEP 8 Unmodified _RYCMKFEP_ 0 0 0 REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|2|1|sense REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 537.3233032226562 2 537.24898 1072.48341 NaN NaN NaN NaN NaN NaN NaN 83.799 1 83.799 83.299 84.299 0 0 0 0 0.40746 1 19916 19916 0.69038 0 1 + 39678 25330 25110 25121 45087 45087 -0.04993514852048975 RYDLRLSV 8 Unmodified _RYDLRLSV_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|143|1|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|143|1|anti-sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|143|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.29229736328125 2 511.293091 1020.57163 -0.18654 -9.5377E-05 -1.2235 -0.00062558 -1.4101 -0.00072096 511.2922792884179 35.034 0.71104 38.72 38.415 39.126 3.6859 80 52 2 0 0 0 0.82752 1 6402 6402 2.3027 0 1 120870 39679 14170 25111 25122 45088 45088 0.06216565054410239 RYDQPKLLY 9 Unmodified _RYDQPKLLY_ 0 0 0 REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|174|3|anti-sense REV__L1MEg_dup149|chr1:41077046-41079407:+|3.0878410539471277|0.1353102381084558|4.51|151.0|174|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 598.8597412109375 2 598.327131 1194.63971 0.5012 0.00029988 -0.58572 -0.00035045 -0.084517 -5.0569E-05 598.3266008642332 52.922 0.45081 56.117 55.933 56.383 3.1948 38 28 2 0 0 0 0.118 1 11882 11882 10.074 0.6908 1 90488 + 39680 28732 25112 25123 45089 45089 0.050173899144283496 RYENLINA 8 Unmodified _RYENLINA_ 0 0 0 REV__L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|10|1|sense REV__L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 496.7743835449219 2 496.761623 991.508694 NaN NaN NaN NaN NaN NaN NaN 76.261 1 76.261 75.761 76.761 0 0 0 0 0.39819 1 17778 17778 8.5933 0 1 + 39681 24306 25113 25124 45090 45090 0.012599992663695048 RYETVNFGL 9 Unmodified _RYETVNFGL_ 0 0 0 REV__Charlie1a_dup4302|chr12:116170037-116170597:-|2.1755359679567325|0.0117443741751158|7.53|151.0|7|1|sense REV__Charlie1a_dup4302|chr12:116170037-116170597:-|2.1755359679567325|0.0117443741751158|7.53|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 549.780517578125 2 549.782556 1097.55056 NaN NaN NaN NaN NaN NaN NaN 84.319 1 87.743 87.243 88.243 3.4232 0 0 0 0.38478 1 21029 21029 4.3292 2.0265 1 + 39682 17329 25114 25125 45091 45091 0.005685549549070856 RYFCCGVK 8 Unmodified _RYFCCGVK_ 0 0 0 L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|67|2|anti-sense L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|67|2|anti-sense L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|67|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.22998046875 2 488.23059 974.446628 -0.13216 -6.4523E-05 -0.050449 -2.4631E-05 -0.18261 -8.9154E-05 488.2305050025572 23.985 0.45317 27.451 27.231 27.684 3.4655 48 35 2 0 0 0 0.82752 1 3102 3102 2.3027 0.24298 1 41815 39683 13091 25115 25126 45092 45092 -0.041617666779643514 RYFCLQQIS 9 Unmodified _RYFCLQQIS_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|304|2|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|304|2|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|304|2|anti-sense MSMS UPN47_class_I_Rep_1 2 579.2930908203125 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 50.918 1 54.547 54.047 55.047 3.6285 0 0 0 0.39518 1 11207 11207 1.8442 0.19162 1 39684 11000 25116 25127 45093 45093 -0.002108120258526469 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN48_class_I_Rep_1 5 607.80126953125 2 607.80128 1213.58801 0.43242 0.00026283 0.10358 6.2958E-05 0.536 0.00032578 607.8012312010646 42.852 0.97472 46.362 45.949 46.923 3.5103 197 75 3 0 0 0 0.18997 3 8002 7919;8002;8039 61.09 35.691 1 633270 39685 4320 25117 25128 45094;45095;45096 45095 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN48_class_I_Rep_1 5 607.8012084960938 2 607.80128 1213.58801 0.42983 0.00026125 -0.064957 -3.9481E-05 0.36487 0.00022177 607.8012448674282 43.48 0.11045 46.99 46.913 47.024 3.5103 12 9 2 0 0 0 0.54148 1 8157 8157 6.6304 3.3491 1 115240 39686 4320 25117 25128 45097 45097 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN48_class_I_Rep_2 6 607.8014526367188 2 607.80128 1213.58801 0.42128 0.00025605 0.094452 5.7408E-05 0.51573 0.00031346 607.8012687423815 42.571 1.221 46.329 45.791 47.012 3.7579 303 107 4 0 0 0 0.11892 7 7886 7775;7812;7850;7886;7925;7966;8079 83.278 54.196 1 903110 39687 4320 25117 25128 45098;45099;45100;45101;45102;45103;45104 45101 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS UPN48_class_I_Rep_3 7 607.801513671875 2 607.80128 1213.58801 0.4709 0.00028621 -0.036373 -2.2107E-05 0.43452 0.0002641 607.8011569951794 42.707 1.0301 46.348 45.855 46.885 3.6415 210 83 3 0 0 0 0.22158 6 7832 7745;7791;7832;7871;7908;7946 53.317 34.06 1 732590 39688 4320 25117 25128 45105;45106;45107;45108;45109;45110 45107 -0.010243537794849544 RYFDTAVSR 9 Unmodified _RYFDTAVSR_ 0 0 0 ENST00000484378.1_1_6:31239370-31239848:-|nuORF;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C ENST00000484378.1_1_6:31239370-31239848:-|nuORF ENST00000484378.1_1_6:31239370-31239848:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 557.7855834960938 2 557.78563 1113.55671 0.28199 0.00015729 -0.098612 -5.5005E-05 0.18338 0.00010229 557.7854593600118 35.076 1.598 35.076 34.684 36.282 0 255 119 3 0 0 0 0.0062637 7 6428 6260;6307;6343;6388;6428;6470;6545 174.48 74.727 1 1324400 39689 5528 25118 25129 45111;45112;45113;45114;45115;45116;45117 45115 0.0044707318641030724 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_1 5 583.3040771484375 2 583.303655 1164.59276 0.41261 0.00024067 0.1092 6.3694E-05 0.5218 0.00030437 583.303642672894 50.433 0.73457 53.957 53.624 54.359 3.5246 95 49 3 0 0 0 0.33908 1 10331 10331 11.495 4.2055 1 279130 39690 5298 25119 25130 45118 45118 0.017045303632812647 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN48_class_I_Rep_1 5 583.3035278320312 2 583.303655 1164.59276 NaN NaN NaN NaN NaN NaN NaN 50.404 1 53.928 53.428 54.428 3.5246 0 0 0 0.25702 1 10290 10290 13.042 0.51092 1 39691 5298 25119 25130 45119 45119 0.017045303632812647 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_2 6 583.303466796875 2 583.303655 1164.59276 0.44848 0.0002616 0.11417 6.6594E-05 0.56265 0.0003282 583.3036430732811 50.183 0.71926 53.878 53.639 54.358 3.6946 80 47 2 0 0 0 0.31407 3 10296 10210;10254;10296 13.042 0.83525 1 208500 39692 5298 25119 25130 45120;45121;45122 45122 0.017045303632812647 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|2|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS UPN48_class_I_Rep_3 7 583.3038330078125 2 583.303655 1164.59276 0.38487 0.0002245 0.15341 8.9483E-05 0.53828 0.00031398 583.3036976069474 50.36 0.70133 53.981 53.706 54.407 3.621 92 43 3 0 0 0 0.31407 2 10243 10199;10243 13.042 0.58988 1 249930 39693 5298 25119 25130 45123;45124 45124 0.017045303632812647 RYFERPRQG 9 Unmodified _RYFERPRQG_ 0 0 0 AluJr_dup646|chr1:16275339-16275654:+|1.0422198267277818|0.0092560661719743|6.82|151.0|6|2|sense AluJr_dup646|chr1:16275339-16275654:+|1.0422198267277818|0.0092560661719743|6.82|151.0|6|2|sense AluJr_dup646|chr1:16275339-16275654:+|1.0422198267277818|0.0092560661719743|6.82|151.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 604.8194580078125 2 604.817796 1207.62104 NaN NaN NaN NaN NaN NaN NaN 34.256 1 37.935 37.435 38.435 3.6797 0 0 0 0.39428 1 5423 5423 2.0598 0.21551 1 39694 168 25120 25131 45125 45125 0.0255327306322215 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_1 5 561.8189697265625 2 561.818941 1121.62333 0.44056 0.00024752 -0.11957 -6.7178E-05 0.32099 0.00018034 561.8187392462014 49.277 1.2428 52.801 52.209 53.452 3.5243 218 88 3 0 0 0 0.0065234 7 9935 9822;9860;9898;9935;9974;10015;10045 74.2 46.311 1 756070 39695 5756;1078 25121 25132 45126;45127;45128;45129;45130;45131;45132 45129 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_2 6 561.819091796875 2 561.818941 1121.62333 0.42035 0.00023616 -0.047891 -2.6906E-05 0.37246 0.00020926 561.8187963974133 48.994 1.2903 52.711 52.149 53.439 3.7175 216 88 3 0 0 0 0.0058741 9 9844 9714;9739;9754;9797;9844;9884;9924;9964;10008 76.825 46.188 1 834470 39696 5756;1078 25121 25132 45133;45134;45135;45136;45137;45138;45139;45140;45141 45137 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3 ENSG00000254598|ENST00000528848|CSNK2A3 MULTI-MSMS UPN48_class_I_Rep_3 7 561.819091796875 2 561.818941 1121.62333 0.33116 0.00018605 0.11965 6.7223E-05 0.45081 0.00025327 561.8188599701042 49.165 1.2915 52.794 52.22 53.512 3.6291 206 92 3 0 0 0 0.0063213 9 9812 9692;9732;9771;9812;9853;9857;9897;9940;9989 89.401 58.764 1 825950 39697 5756;1078 25121 25132 45142;45143;45144;45145;45146;45147;45148;45149;45150 45145 0.06738308748322197 RYFKNVRIK 9 Unmodified _RYFKNVRIK_ 0 0 0 REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF MSMS UPN46_class_I_Rep_3 1 612.6548461914062 2 612.372207 1222.72986 NaN NaN NaN NaN NaN NaN NaN 117.49 1 117.49 116.99 117.99 0 0 0 0 0.4007 1 29124 29124 0.52476 0 1 + 39698 18955 25122 25133 45151 45151 0.12740484033497523 RYFKTPRKF 9 Unmodified _RYFKTPRKF_ 0 0 0 nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-5|CIZ1 MSMS UPN48_class_I_Rep_1 5 414.9078674316406 3 414.90838 1241.70331 NaN NaN NaN NaN NaN NaN NaN 29.851 1 33.401 32.901 33.901 3.5499 0 0 0 0.10315 1 4209 4209 22.658 7.7009 1 39699 3499 25123 25134 45152 45152 0.09212795142161667 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_1 5 602.3135375976562 2 602.313492 1202.61243 0.45587 0.00027457 0.23263 0.00014012 0.68849 0.00041469 602.3134753663497 73.535 0.2209 77.016 76.87 77.091 3.4812 37 22 2 0 0 0 0.23293 3 17309 17309;17312;17345 18.146 12.414 1 111480 39700 816 25124 25135 45153;45154;45155 45153 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_1 5 602.3136596679688 2 602.313492 1202.61243 0.45571 0.00027448 0.10066 6.063E-05 0.55637 0.00033511 602.3133628699243 73.695 0.17915 77.177 77.072 77.251 3.4812 40 19 3 0 0 0 0.052902 2 17382 17382;17399 47.749 31.902 1 275160 39701 816 25124 25135 45156;45157 45156 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_1 5 602.3135986328125 2 602.313492 1202.61243 0.45535 0.00027426 0.63572 0.0003829 1.0911 0.00065717 602.3137715434092 73.832 0.27639 77.314 77.243 77.519 3.4812 44 25 3 0 0 0 0.23293 3 17419 17419;17455;17470 18.146 12.849 1 203790 39702 816 25124 25135 45158;45159;45160 45158 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_1 5 602.3138427734375 2 602.313492 1202.61243 0.45458 0.0002738 0.86116 0.00051869 1.3157 0.00079249 602.3141705533368 74.121 0.10911 77.611 77.564 77.673 3.49 12 8 2 0 0 0 0.36392 1 17505 17505 10.074 2.465 1 76989 39703 816 25124 25135 45161 45161 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_2 6 602.3135375976562 2 602.313492 1202.61243 0.47962 0.00028888 0.2204 0.00013275 0.70002 0.00042163 602.3135547020064 73.562 0.56168 77.14 76.88 77.441 3.5779 87 61 2 0 0 0 0.17897 4 17331 17256;17296;17331;17334 22.736 15.447 1 273250 39704 816 25124 25135 45162;45163;45164;45165 45164 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_2 6 602.3136596679688 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.236 1 76.8 76.3 77.3 3.5645 0 0 0 0.2408 1 17187 17187 13.906 3.1065 1 39705 816 25124 25135 45166 45166 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_2 6 602.3131713867188 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.287 1 76.865 76.365 77.365 3.5779 0 0 0 0.17222 1 17202 17202 18.146 7.3468 1 39706 816 25124 25135 45167 45167 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_2 6 602.3134765625 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.356 1 76.934 76.434 77.434 3.5779 0 0 0 0.029402 1 17222 17222 45.7 30.451 1 39707 816 25124 25135 45168 45168 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_2 6 602.3126831054688 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.897 1 77.475 76.975 77.975 3.5779 0 0 0 0.17222 1 17370 17370 18.146 7.3468 1 39708 816 25124 25135 45169 45169 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_2 6 602.312744140625 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 74.028 1 77.606 77.106 78.106 3.5779 0 0 0 0.17222 1 17408 17408 18.146 7.3468 1 39709 816 25124 25135 45170 45170 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_3 7 602.8162231445312 2 602.313492 1202.61243 0.59244 0.00035684 -0.025089 -1.5112E-05 0.56735 0.00034172 602.8147218507218 73.551 0.37254 77.088 76.758 77.131 3.5373 52 42 2 0 0 0 0.24936 5 17194 17142;17179;17194;17206;17222 17.113 11.816 1 108980 39710 816 25124 25135 45171;45172;45173;45174;45175 45173 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS UPN48_class_I_Rep_3 7 602.3138427734375 2 602.313492 1202.61243 0.59181 0.00035646 0.0044727 2.694E-06 0.59629 0.00035915 602.3136706871635 73.646 0.13551 77.196 77.144 77.279 3.5505 22 16 2 0 0 0 0.17897 1 17254 17254 22.736 11.912 1 101230 39711 816 25124 25135 45176 45176 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_3 7 602.3153686523438 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.742 1 77.292 76.792 77.792 3.5505 0 0 0 0.37692 1 17266 17266 6.2058 2.6093 1 39712 816 25124 25135 45177 45177 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_3 7 602.3133544921875 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.824 1 77.375 76.875 77.875 3.5505 0 0 0 0.17222 1 17287 17287 18.146 7.3468 1 39713 816 25124 25135 45178 45178 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MSMS UPN48_class_I_Rep_3 7 602.313232421875 2 602.313492 1202.61243 NaN NaN NaN NaN NaN NaN NaN 73.989 1 77.54 77.04 78.04 3.5505 0 0 0 0.31276 1 17331 17331 10.074 2.465 1 39714 816 25124 25135 45179 45179 0.01922906374034028 RYFLSRSVY 9 Unmodified _RYFLSRSVY_ 0 0 0 HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|131|1|anti-sense HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|131|1|anti-sense HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|131|1|anti-sense MSMS UPN48_class_I_Rep_2 6 595.8182373046875 2 595.819473 1189.62439 NaN NaN NaN NaN NaN NaN NaN 41.61 1 45.361 44.861 45.861 3.7508 0 0 0 0.39598 1 7616 7616 1.6526 0.17072 1 39715 8362 25125 25136 45180 45180 0.03716523117259385 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS UPN48_class_I_Rep_1 5 584.2879638671875 2 584.287671 1166.56079 0.54031 0.0003157 -0.030075 -1.7572E-05 0.51024 0.00029813 584.2876088876536 58.807 1.1016 62.294 61.875 62.977 3.487 247 69 5 0 0 0 0.1249 3 12924 12796;12924;12966 29.082 9.8246 1 3861500 + 39716 20270 25126 25137 45181;45182;45183 45182 -0.015828821105287716 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS UPN48_class_I_Rep_2 6 584.2879028320312 2 584.287671 1166.56079 0.56818 0.00033198 -0.021575 -1.2606E-05 0.5466 0.00031937 584.2876344143053 58.788 1.2756 62.287 61.864 63.139 3.4987 265 81 4 0 0 0 0.097406 7 12802 12762;12802;12843;12880;12921;12960;13000 34.402 9.3831 1 5828300 + 39717 20270 25126 25137 45184;45185;45186;45187;45188;45189;45190 45185 -0.015828821105287716 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS UPN48_class_I_Rep_3 7 584.2879028320312 2 584.287671 1166.56079 0.45004 0.00026295 0.077494 4.5279E-05 0.52754 0.00030823 584.2876714769718 58.74 1.299 62.263 61.735 63.034 3.5231 267 88 4 0 0 0 0.066633 6 12693 12650;12693;12734;12773;12810;12850 41.84 41.84 1 4790600 + 39718 20270 25126 25137 45191;45192;45193;45194;45195;45196 45192 -0.015828821105287716 RYFQAASGDF 10 Unmodified _RYFQAASGDF_ 0 0 0 ENST00000586847.1_1_18:77794565-77797271:+|nuORF;ENST00000306735.9_1_18:77794565-77797363:+|nuORF ENST00000586847.1_1_18:77794565-77797271:+|nuORF ENST00000586847.1_1_18:77794565-77797271:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 581.2695922851562 2 581.269813 1160.52507 0.35651 0.00020723 0.033304 1.9359E-05 0.38982 0.00022659 581.2697685997131 52.462 0.69073 56.06 55.767 56.458 3.5979 104 57 2 0 0 0 0.41718 1 10834 10834 18.146 2.8979 1 255220 39719 6095 25127 25138 45197 45197 -0.04876919567527693 RYFSTAVSR 9 Unmodified _RYFSTAVSR_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MULTI-MSMS UPN46_class_I_Rep_3 1 543.7866821289062 2 543.788173 1085.56179 0.18656 0.00010145 -0.43369 -0.00023584 -0.24713 -0.00013439 543.7879985808595 33.252 0.6972 33.252 32.915 33.612 0 90 56 2 0 0 0 0.31677 5 5726 5726;5729;5764;5778;5804 12.873 2.722 1 87213 39720 5535 25128 25139 45198;45199;45200;45201;45202 45198 0.02243377049035189 RYFTPTVFT 9 Unmodified _RYFTPTVFT_ 0 0 0 REV__ENSG00000114554|ENST00000393409|PLXNA1 REV__ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS UPN48_class_I_Rep_1 5 564.7899780273438 2 566.295299 1130.57605 0.46667 0.00026428 0.42193 0.00023894 0.8886 0.00050321 566.295194583641 69.441 0.98286 72.896 72.409 73.392 3.4548 122 67 3 0 0 0 0.48846 1 16224 16224 1.8442 0.19162 1 497870 + 39721 18530 25129 25140 45203 45203 0.01598029477304408 RYFTQIVGF 9 Unmodified _RYFTQIVGF_ 0 0 0 nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MSMS UPN48_class_I_Rep_2 6 565.803466796875 2 565.803291 1129.59203 0.50466 0.00028554 -0.23649 -0.00013381 0.26818 0.00015173 565.8031070098161 67.277 0.72882 70.773 70.31 71.039 3.4964 80 50 2 0 0 0 0.16559 1 15415 15415 24.021 3.5669 1 188410 39722 3072 25130 25141 45204 45204 0.032417357142321634 RYGDGGSTF 9 Unmodified _RYGDGGSTF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN48_class_I_Rep_1 5 480.21441650390625 2 480.214506 958.414459 0.19798 9.5074E-05 -0.068027 -3.2668E-05 0.12996 6.2406E-05 480.21443168077053 27.698 0.92784 31.26 30.939 31.866 3.5629 217 102 3 0 0 0 0.20317 1 3607 3607 20.415 4.5674 1 296520 39723 4400 25131 25142 45205 45205 -0.06641139555756581 RYGDGGSTF 9 Unmodified _RYGDGGSTF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN48_class_I_Rep_2 6 480.2143859863281 2 480.214506 958.414459 0.26191 0.00012577 -0.055438 -2.6622E-05 0.20647 9.9149E-05 480.214442784132 27.719 1.0502 31.35 31.005 32.056 3.6311 229 110 3 0 0 0 0.19147 1 3738 3738 21.537 1.0834 1 330700 39724 4400 25131 25142 45206 45206 -0.06641139555756581 RYGDGGSTF 9 Unmodified _RYGDGGSTF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN48_class_I_Rep_3 7 480.2145080566406 2 480.214506 958.414459 0.11579 5.5606E-05 0.58349 0.0002802 0.69929 0.00033581 480.2148332571154 27.587 1.3927 31.342 30.91 32.302 3.7555 294 161 3 0 0 0 0.15547 2 3629 3629;3661 24.991 4.5373 1 330290 39725 4400 25131 25142 45207;45208 45207 -0.06641139555756581 RYGLGFLQFV 10 Unmodified _RYGLGFLQFV_ 0 0 0 REV__L1M5_dup51057|chr19:34206692-34206966:+|1.7363980410082824|0.0935405273304109|4.21|151.0|15|1|anti-sense REV__L1M5_dup51057|chr19:34206692-34206966:+|1.7363980410082824|0.0935405273304109|4.21|151.0|15|1|anti-sense MSMS UPN46_class_I_Rep_3 1 600.1219482421875 2 600.332216 1198.64988 NaN NaN NaN NaN NaN NaN NaN 88.66 1 88.66 88.16 89.16 0 0 0 0 0.53105 1 21303 21303 3.2813 1.4371 1 + 39726 24694 25132 25143 45209 45209 0.05849997639643334 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS UPN48_class_I_Rep_1 5 532.7898559570312 2 532.790381 1063.56621 0.32013 0.00017056 0.13508 7.1972E-05 0.45521 0.00024253 532.7902817114705 48.017 1.0412 51.539 51.198 52.239 3.5219 106 68 2 0 0 0 0.19092 3 9532 9494;9532;9573 21.59 7.5492 1 209650 39727 2117 25133 25144 45210;45211;45212 45211 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS UPN48_class_I_Rep_2 6 532.790771484375 2 532.790381 1063.56621 0.33417 0.00017804 -0.07234 -3.8542E-05 0.26183 0.0001395 532.79032235432 47.674 1.08 51.41 51.127 52.207 3.7361 115 78 2 0 0 0 0.13455 2 9442 9389;9442 27.223 6.7696 1 165110 39728 2117 25133 25144 45213;45214 45214 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS UPN48_class_I_Rep_3 7 532.7901000976562 2 532.790381 1063.56621 0.43731 0.000233 -0.13673 -7.2846E-05 0.30059 0.00016015 532.790279972683 47.91 1.027 51.544 51.189 52.216 3.6339 108 71 2 0 0 0 0.22932 2 9400 9400;9443 18.373 6.8784 1 147490 39729 2117 25133 25144 45215;45216 45215 0.036968414719467546 RYGNIRKVKRA 11 Unmodified _RYGNIRKVKRA_ 0 0 0 REV__LTR6B_dup148|chr19:57830743-57831318:-|1.5481139160796735|0.0533814030747959|4.86|151.0|24|1|anti-sense REV__LTR6B_dup148|chr19:57830743-57831318:-|1.5481139160796735|0.0533814030747959|4.86|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2801208496094 3 454.280988 1359.82114 NaN NaN NaN NaN NaN NaN NaN 53.002 1 56.56 56.06 57.06 3.5585 0 0 0 0.38417 1 11838 11838 0.45452 0.046251 1 + 39730 30993 25134 25145 45217 45217 0.1556174773083967 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS UPN48_class_I_Rep_1 5 541.2879028320312 2 541.287474 1080.5604 0.40823 0.00022097 -0.32816 -0.00017763 0.080076 4.3344E-05 541.2872404368401 52.505 0.33494 56.027 55.959 56.294 3.5224 47 28 2 0 0 0 0.37599 2 10923 10923;10966 9.3831 5.0539 1 127190 39731 3676 25135 25146 45218;45219 45218 0.023337429602634074 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS UPN48_class_I_Rep_2 6 541.7894897460938 2 541.287474 1080.5604 0.51666 0.00027966 -0.49818 -0.00026966 0.018471 9.9983E-06 541.2870239884866 52.471 0.47934 56.11 55.835 56.315 3.639 50 39 2 0 0 0 0.31407 2 10880 10880;10906 13.042 7.7456 1 148530 39732 3676 25135 25146 45220;45221 45220 0.023337429602634074 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MSMS UPN48_class_I_Rep_2 6 541.2869873046875 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 52.292 1 55.931 55.431 56.431 3.639 0 0 0 0.25702 1 10847 10847 13.042 0 1 39733 3676 25135 25146 45222 45222 0.023337429602634074 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS UPN48_class_I_Rep_3 7 541.2869873046875 2 541.287474 1080.5604 0.39973 0.00021637 -0.081834 -4.4296E-05 0.31789 0.00017207 541.2873853552414 52.457 0.46287 56.055 55.826 56.289 3.5979 68 41 2 0 0 0 0.31407 4 10829 10793;10829;10863;10875 13.042 13.042 1 155660 39734 3676 25135 25146 45223;45224;45225;45226 45224 0.023337429602634074 RYHAQLMVF 9 Unmodified _RYHAQLMVF_ 0 0 0 AluSx_dup47177|chr7:139992889-139993184:+|1.0565248238586673|0.0045024472473915|7.87|151.0|14|2|anti-sense AluSx_dup47177|chr7:139992889-139993184:+|1.0565248238586673|0.0045024472473915|7.87|151.0|14|2|anti-sense AluSx_dup47177|chr7:139992889-139993184:+|1.0565248238586673|0.0045024472473915|7.87|151.0|14|2|anti-sense MSMS UPN47_class_I_Rep_2 3 582.8052368164062 2 582.802768 1163.59098 NaN NaN NaN NaN NaN NaN NaN 69.683 1 72.959 72.459 73.459 3.2761 0 0 0 0.38478 1 16936 16936 4.3292 0.73274 1 39735 288 25136 25147 45227 45227 0.015731980736745754 RYHHCYRK 8 Unmodified _RYHHCYRK_ 0 0 0 Tigger2_dup1266|chr7:39663184-39664812:+|2.1637318172637023|0.0929454479113448|4.54|151.0|13|1|sense Tigger2_dup1266|chr7:39663184-39664812:+|2.1637318172637023|0.0929454479113448|4.54|151.0|13|1|sense Tigger2_dup1266|chr7:39663184-39664812:+|2.1637318172637023|0.0929454479113448|4.54|151.0|13|1|sense MSMS UPN47_class_I_Rep_2 3 581.7872924804688 2 581.787984 1161.56142 NaN NaN NaN NaN NaN NaN NaN 32.003 1 35.472 34.972 35.972 3.4691 0 0 0 0.40746 1 5491 5491 0.69038 0 1 39736 33281 25137 25148 45228 45228 -0.012903211518278113 RYHSRQTL 8 Unmodified _RYHSRQTL_ 0 0 0 REV__L1PA6_dup862|chr2:208395714-208397316:+|1.90585448789774|0.0194824047564396|6.61|135.0|17|1|sense REV__L1PA6_dup862|chr2:208395714-208397316:+|1.90585448789774|0.0194824047564396|6.61|135.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.78515625 2 530.785964 1059.55738 0.085721 4.5499E-05 -0.80696 -0.00042833 -0.72124 -0.00038283 531.2869952524212 45.789 0.51668 49.489 49.258 49.775 3.6999 42 30 2 0 0 0 0.82752 1 9661 9661 10.074 0.6908 1 93736 + 39737 29952 25138 25149 45229 45229 0.029979126261423517 RYHYFVYR 8 Unmodified _RYHYFVYR_ 0 0 0 REV__L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|83|1|anti-sense REV__L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|83|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.2332763671875 2 602.306532 1202.59851 NaN NaN NaN NaN NaN NaN NaN 111.82 1 115.48 114.98 115.98 3.6614 0 0 0 0.40746 1 26549 26549 0.69038 0 1 + 39738 27616 25139 25150 45230 45230 0.005316736655913701 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN48_class_I_Rep_1 5 539.7984619140625 2 539.798206 1077.58186 0.368 0.00019865 -0.1916 -0.00010342 0.1764 9.5223E-05 539.7980552970906 47.087 0.76331 50.606 50.211 50.974 3.5192 114 50 3 0 0 0 0.033731 2 9257 9217;9257 55.503 13.547 1 573110 39739 2259 25140 25151 45231;45232 45232 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN48_class_I_Rep_2 6 539.79833984375 2 539.798206 1077.58186 0.37737 0.0002037 -0.22898 -0.0001236 0.14839 8.01E-05 539.7980392946799 46.814 0.78252 50.564 50.152 50.934 3.7494 133 55 3 0 0 0 0.028995 3 9194 9113;9155;9194 57.722 15.766 1 543070 39740 2259 25140 25151 45233;45234;45235 45235 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2 nc|ENSG00000118705|P04844-2|RPN2 nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS UPN48_class_I_Rep_3 7 539.7981567382812 2 539.798206 1077.58186 0.47403 0.00025588 -0.25508 -0.00013769 0.21895 0.00011819 539.7980563407941 47.002 0.80315 50.638 50.229 51.032 3.6363 134 56 3 0 0 0 0.033731 4 9183 9135;9183;9225;9271 55.503 13.547 1 716850 39741 2259 25140 25151 45236;45237;45238;45239 45237 0.0461712798901317 RYIDYQFQ 8 Unmodified _RYIDYQFQ_ 0 0 0 REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|128|2|anti-sense REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|128|2|anti-sense MSMS UPN47_class_I_Rep_2 3 566.7744750976562 2 566.774731 1131.53491 NaN NaN NaN NaN NaN NaN NaN 31.692 1 35.161 34.661 35.661 3.4691 0 0 0 0.40643 1 5396 5396 2.0598 0 1 + 39742 26639 25141 25152 45240 45240 -0.025597315621553207 RYIEVIALI 9 Unmodified _RYIEVIALI_ 0 0 0 REV__ENSG00000163539.17,CLASP2,chr3,-,I22.1,33603126,33604153|27|7.08|3|intron REV__ENSG00000163539.17,CLASP2,chr3,-,I22.1,33603126,33604153|27|7.08|3|intron MSMS UPN47_class_I_Rep_2 3 545.335205078125 2 545.336967 1088.65938 NaN NaN NaN NaN NaN NaN NaN 99.223 1 102.71 102.21 103.21 3.4897 0 0 0 0.39518 1 24301 24301 1.8442 0 1 + 39743 17462 25142 25153 45241 45241 0.11859765925169086 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK MULTI-MSMS UPN48_class_I_Rep_1 5 586.8368530273438 2 586.334759 1170.65496 0.51843 0.00030398 -0.17806 -0.0001044 0.34038 0.00019957 586.3345355550357 57.72 0.4 61.214 61.082 61.482 3.4942 50 30 2 0 0 0 0.21527 1 12560 12560 19.257 3.4098 1 162250 39744 2101 25143 25154 45242 45242 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK MSMS UPN48_class_I_Rep_2 6 586.334716796875 2 586.334759 1170.65496 NaN NaN NaN NaN NaN NaN NaN 58.191 1 61.69 61.19 62.19 3.4987 0 0 0 0.37476 1 12653 12653 6.7232 2.7788 1 39745 2101 25143 25154 45243 45243 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK MULTI-MSMS UPN48_class_I_Rep_3 7 586.3349609375 2 586.334759 1170.65496 0.42701 0.00025037 0.048306 2.8324E-05 0.47531 0.00027869 586.334814762947 57.472 0.24991 61.003 60.813 61.063 3.5317 48 22 3 0 0 0 0.46869 1 12322 12322 3.9444 0.3479 1 144020 39746 2101 25143 25154 45244 45244 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK MULTI-MSMS UPN48_class_I_Rep_3 7 586.3350219726562 2 586.334759 1170.65496 0.43199 0.00025329 0.1955 0.00011463 0.62749 0.00036792 586.334845171997 57.639 0.37717 61.171 61.055 61.432 3.5317 41 27 2 0 0 0 0.36392 1 12442 12442 10.074 3.8681 1 184690 39747 2101 25143 25154 45245 45245 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK MULTI-MATCH UPN48_class_I_Rep_1 5 2 586.334759 1170.65496 0.52414 0.00030732 0.019907 1.1672E-05 0.54404 0.00031899 586.3349307419606 58.035 0.15843 61.522 61.46 61.619 3.487 0.17583 -0.0001716 NaN 10.074 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 60248 39748 2101 25143 25154 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK nc|ENSG00000114956|Q16854-3|DGUOK MULTI-MATCH UPN48_class_I_Rep_2 6 2 586.334759 1170.65496 0.58087 0.00034058 -0.23987 -0.00014064 0.341 0.00019994 586.3345674870852 57.814 0.55064 61.328 60.984 61.534 3.5142 0.14601 -0.00013885 NaN 19.257 75 40 2 NaN NaN NaN NaN 0 NaN NaN 0 201810 39749 2101 25143 25154 0.07646301502268216 RYIFASNLY 9 Unmodified _RYIFASNLY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS UPN48_class_I_Rep_1 5 573.8031005859375 2 573.800749 1145.58694 0.5442 0.00031226 -0.04225 -2.4243E-05 0.50195 0.00028802 573.8006311442549 59.224 0.88953 62.704 62.378 63.267 3.4801 101 58 3 0 0 0 0.24936 3 12958 12944;12958;12990 17.113 3.6474 1 227510 39750 3721 25144 25155 45246;45247;45248 45247 0.01997431851600595 RYIFASNLY 9 Unmodified _RYIFASNLY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS UPN48_class_I_Rep_2 6 573.8010864257812 2 573.800749 1145.58694 0.56436 0.00032383 -0.13563 -7.7825E-05 0.42873 0.00024601 573.8006082581536 59.237 0.75636 62.723 62.371 63.127 3.4868 93 50 2 0 0 0 0.14216 2 12945 12900;12945 26.268 5.8536 1 152620 39751 3721 25144 25155 45249;45250 45250 0.01997431851600595 RYIFASNLY 9 Unmodified _RYIFASNLY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS UPN48_class_I_Rep_3 7 574.302734375 2 573.800749 1145.58694 0.43248 0.00024816 -0.15658 -8.9846E-05 0.2759 0.00015831 573.8007593992168 59.039 0.81897 62.563 62.276 63.095 3.5231 85 55 2 0 0 0 0.20317 3 12811 12782;12811;12928 20.415 5.1661 1 185720 39752 3721 25144 25155 45251;45252;45253 45252 0.01997431851600595 RYIFRKKF 8 Unmodified _RYIFRKKF_ 0 0 0 L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|47|3|sense L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|47|3|sense L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|47|3|sense MSMS UPN47_class_I_Rep_2 3 579.350830078125 2 579.350743 1156.68693 NaN NaN NaN NaN NaN NaN NaN 76.914 1 80.245 79.745 80.745 3.3315 0 0 0 0.40746 1 19055 19055 0.69038 0 1 39753 9859 25145 25156 45254 45254 0.11485713976071565 RYIGPSPEHF 10 Unmodified _RYIGPSPEHF_ 0 0 0 REV__Charlie1a_dup3899|chr11:43895594-43896234:+|1.0795068731640372|0.1957803839099745|2.46|151.0|44|2|anti-sense REV__Charlie1a_dup3899|chr11:43895594-43896234:+|1.0795068731640372|0.1957803839099745|2.46|151.0|44|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.8019409179688 2 601.80128 1201.58801 0.45608 0.00027447 -0.12823 -7.7168E-05 0.32785 0.0001973 601.8012203361426 42.794 0.53013 46.436 46.222 46.753 3.6415 50 41 2 0 0 0 0.52562 1 7929 7929 8.7454 1.4562 1 129590 + 39754 17322 25146 25157 45255 45255 -0.00472353779491641 RYIIRKYFLLF 11 Unmodified _RYIIRKYFLLF_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|79|3|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|79|3|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_3 4 511.308349609375 3 511.309773 1530.90749 NaN NaN NaN NaN NaN NaN NaN 52.281 1 55.486 54.986 55.986 3.2055 0 0 0 0.38417 1 11705 11705 0.094841 0.011491 1 39755 15291 25147 25158 45256 45256 0.1632731451284144 RYIIRKYFLLF 11 Unmodified _RYIIRKYFLLF_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|79|3|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|79|3|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_3 4 511.3093566894531 3 511.309773 1530.90749 NaN NaN NaN NaN NaN NaN NaN 65.063 1 68.242 67.742 68.742 3.1795 0 0 0 0.38417 1 15601 15601 0.094841 0.011491 1 39756 15291 25147 25158 45257 45257 0.1632731451284144 RYILRWLR 8 Unmodified _RYILRWLR_ 0 0 0 L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|74|2|sense L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|74|2|sense L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|74|2|sense MSMS UPN47_class_I_Rep_2 3 588.360107421875 2 588.361642 1174.70873 NaN NaN NaN NaN NaN NaN NaN 111.04 1 114.57 114.07 115.07 3.5271 0 0 0 0.40746 1 27034 27034 0.69038 0 1 39757 14489 25148 25159 45258 45258 0.12836518724634516 RYINQLTIQ 9 Unmodified _RYINQLTIQ_ 0 0 0 REV__L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|96|2|anti-sense REV__L1MC5a_dup16862|chr22:45766652-45768416:+|1.533083821102405|0.0466895371129054|5.04|150.0|96|2|anti-sense MSMS UPN46_class_I_Rep_3 1 574.8252563476562 2 574.824755 1147.63496 NaN NaN NaN NaN NaN NaN NaN 102.94 1 102.94 102.44 103.44 0 0 0 0 0.39518 1 25121 25121 1.8442 0 1 + 39758 27146 25149 25160 45259 45259 0.0670450577167685 RYIPAIPSL 9 Unmodified _RYIPAIPSL_ 0 0 0 L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|338|3|anti-sense L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|338|3|anti-sense L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|338|3|anti-sense MSMS UPN48_class_I_Rep_3 7 515.308349609375 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 67.053 1 70.561 70.061 71.061 3.5077 0 0 0 0.37476 1 15278 15278 6.7232 0 1 39759 15431 25150 25161 45260 45260 0.08870923719587154 RYIPKRKAE 9 Unmodified _RYIPKRKAE_ 0 0 0 L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|7|1|sense L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|7|1|sense L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.8487548828125 2 580.848564 1159.68258 0.40851 0.00023728 -0.01234 -7.1677E-06 0.39617 0.00023012 580.8485139676602 45.212 0.73195 48.729 48.289 49.021 3.5162 74 52 2 0 0 0 0.47197 1 8644 8644 3.5965 1.7523 1 151830 39760 10531 25151 25162 45261 45261 0.10912204762507827 RYIPKRKAE 9 Unmodified _RYIPKRKAE_ 0 0 0 L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|7|1|sense L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|7|1|sense L1MB4_dup5418|chr10:28600876-28602068:+|2.003942052476676|0.2355194749218091|3.09|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.3506469726562 2 580.848564 1159.68258 0.39816 0.00023127 -0.045842 -2.6627E-05 0.35232 0.00020464 581.3502433880487 44.706 0.7149 48.467 48.237 48.952 3.7617 68 52 2 0 0 0 0.42249 2 8565 8524;8565 6.7232 2.7788 1 195060 39761 10531 25151 25162 45262;45263 45263 0.10912204762507827 RYIPPHLRNR 10 Unmodified _RYIPPHLRNR_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF;ENST00000493363.1_1_Y:15016814-15021353:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MSMS UPN46_class_I_Rep_3 1 441.2582702636719 3 441.258184 1320.75272 NaN NaN NaN NaN NaN NaN NaN 30.425 1 30.425 29.925 30.925 0 0 0 0 0.53105 1 4953 4953 1.9064 0.45126 1 39762 1027 25152 25163 45264 45264 0.10517503150958873 RYIPPHLRNR 10 Unmodified _RYIPPHLRNR_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF;ENST00000493363.1_1_Y:15016814-15021353:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MULTI-SECPEP UPN46_class_I_Rep_3 1 440.90704345703125 3 441.258184 1320.75272 -0.068147 -3.0071E-05 -0.016209 -7.1522E-06 -0.084356 -3.7223E-05 441.2581591665414 31.345 0.49035 31.345 31.141 31.632 0 71 35 3 0 0 0 0.84575 1 5205 5205 1.9064 0.1641 1 103350 39763 1027 25152 25163 45265 45265 0.10517503150958873 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN48_class_I_Rep_1 5 505.2770690917969 2 505.276909 1008.53927 0.21013 0.00010617 0.18731 9.4645E-05 0.39744 0.00020082 505.27702085142136 49.805 1.8686 53.33 52.842 54.711 3.5246 310 117 5 0 0 0 0.0054033 8 10068 9989;10029;10068;10114;10155;10195;10240;10283 78.728 34.87 1 4791700 39764 957 25153 25164 45266;45267;45268;45269;45270;45271;45272;45273 45268 0.035337776513983954 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN48_class_I_Rep_2 6 505.2771911621094 2 505.276909 1008.53927 0.25317 0.00012792 0.18973 9.5867E-05 0.44291 0.00022379 505.27702856304967 49.589 1.7569 53.284 52.799 54.556 3.6946 324 112 5 0 0 0 0.0054033 11 10060 9936;9980;10019;10060;10101;10140;10178;10218;10263;10315;10333 78.728 34.87 1 5467100 39765 957 25153 25164 45274;45275;45276;45277;45278;45279;45280;45281;45282;45283;45284 45277 0.035337776513983954 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MSMS UPN48_class_I_Rep_2 6 505.2774963378906 2 505.276909 1008.53927 NaN NaN NaN NaN NaN NaN NaN 50.649 1 54.316 53.816 54.816 3.6679 0 0 0 0.2408 1 10360 10360 13.906 2.7916 1 39766 957 25153 25164 45285 45285 0.035337776513983954 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000058262|P61619-3|SEC61A1 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 nc|ENSG00000065665|Q9H9S3-3|SEC61A2 MULTI-MSMS UPN48_class_I_Rep_3 7 505.2771301269531 2 505.276909 1008.53927 0.16619 8.3973E-05 0.26107 0.00013191 0.42726 0.00021588 505.2770715312519 49.743 1.7281 53.364 52.899 54.627 3.621 319 108 5 0 0 0 0.0064763 9 10004 9926;9963;10004;10046;10086;10127;10169;10210;10257 88.954 36.686 1 5622600 39767 957 25153 25164 45286;45287;45288;45289;45290;45291;45292;45293;45294 45288 0.035337776513983954 RYISWEAIH 9 Unmodified _RYISWEAIH_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MULTI-MSMS UPN48_class_I_Rep_2 6 587.8041381835938 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.13631 1 8117 8117 26.884 2.8631 1 966840 39768 4499 25154 25165 45295 45295 0.013239500831332407 RYKELQRLGL 10 Unmodified _RYKELQRLGL_ 0 0 0 ENSG00000106819|ENST00000375544|ASPN ENSG00000106819|ENST00000375544|ASPN ENSG00000106819|ENST00000375544|ASPN MULTI-MSMS UPN48_class_I_Rep_1 5 638.3798828125 2 638.380229 1274.7459 0.44105 0.00028156 -0.24618 -0.00015716 0.19488 0.0001244 638.3800478661917 44.478 0.60807 47.991 47.643 48.251 3.5132 72 42 2 0 0 0 0.56078 1 8471 8471 3.2813 0.28607 1 132430 39769 1803 25155 25166 45296 45296 0.11952145479745013 RYKGGYHI 8 Unmodified _RYKGGYHI_ 0 0 0 L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|20|2|sense L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|20|2|sense L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|20|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 497.76788330078125 2 497.266876 992.519199 0.16639 8.2741E-05 -0.16758 -8.3334E-05 -0.0011916 -5.9252E-07 497.2667742606035 40.184 1.0163 43.835 43.604 44.62 3.6509 160 96 2 0 0 0 0.82752 1 7176 7176 4.756 0 1 194490 39770 10014 25156 25167 45297 45297 0.022640267114638846 RYKGPGFEYF 10 Unmodified _RYKGPGFEYF_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MSMS UPN48_class_I_Rep_1 5 632.3116455078125 2 632.31148 1262.60841 NaN NaN NaN NaN NaN NaN NaN 49.904 1 53.428 52.928 53.928 3.5246 0 0 0 0.53105 1 10135 10135 1.3295 0 1 39771 4218 25157 25168 45298 45298 -0.012391831196737257 RYKGQGKKKT 10 Unmodified _RYKGQGKKKT_ 0 0 0 ENSG00000213066|ENST00000366847|CEP43 ENSG00000213066|ENST00000366847|CEP43 ENSG00000213066|ENST00000366847|CEP43 MSMS UPN47_class_I_Rep_3 4 597.357177734375 2 597.359296 1192.70404 NaN NaN NaN NaN NaN NaN NaN 85.882 1 89.253 88.753 89.753 3.3716 0 0 0 0.53105 1 21521 21521 2.7352 0.89096 1 39772 5580 25158 25169 45299 45299 0.11539589791209437 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 483.64630126953125 3 483.646391 1447.91734 0.10436 5.0473E-05 0.55152 0.00026674 0.65588 0.00031721 483.9810736788813 55.945 0.28485 59.423 59.212 59.497 3.4785 22 16 2 0 0 0 0.68478 1 12730 12730 0.094841 0.011491 1 128410 + 39773 21928 25159 25170 45300 45300 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MSMS UPN47_class_I_Rep_1 2 483.64520263671875 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 84.421 1 87.987 87.487 88.487 3.5655 0 0 0 0.38417 1 21120 21120 0.094841 0 1 + 39774 21928 25159 25170 45301 45301 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MSMS UPN47_class_I_Rep_1 2 483.6464538574219 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 96.335 1 100.11 99.612 100.61 3.7767 0 0 0 0.38417 1 23884 23884 0.094841 0 1 + 39775 21928 25159 25170 45302 45302 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 483.77569580078125 3 483.646391 1447.91734 0.28802 0.0001393 -0.72968 -0.0003529 -0.44166 -0.00021361 483.98017642844724 56.202 0.049889 59.503 59.477 59.527 3.3009 4 2 2 0 0 0 22.551 1 12850 12850 0.45452 0.35968 1 56201 + 39776 21928 25159 25170 45303 45303 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 483.6465148925781 3 483.646391 1447.91734 0.1862 9.0054E-05 0.084182 4.0715E-05 0.27038 0.00013077 483.6463784545172 50.44 0.28103 53.666 53.528 53.809 3.2262 21 15 3 0 0 0 0.68478 1 11151 11151 0.094841 0.094841 1 103350 + 39777 21928 25159 25170 45304 45304 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MSMS UPN48_class_I_Rep_1 5 483.6462707519531 3 483.646391 1447.91734 NaN NaN NaN NaN NaN NaN NaN 79.142 1 82.677 82.177 83.177 3.5352 0 0 0 0.38417 1 18884 18884 0.094841 0 1 + 39778 21928 25159 25170 45305 45305 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 483.646391 1447.91734 0.20375 9.8541E-05 0.4158 0.0002011 0.61955 0.00029964 483.9809676104004 53.678 0.12843 53.678 53.625 53.753 0 0.0059868 0.00016803 NaN 0.094841 15 14 2 NaN NaN NaN NaN 0 NaN NaN 0 229400 + 39779 21928 25159 25170 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 483.646391 1447.91734 0.10436 5.0473E-05 0.55152 0.00026674 0.65588 0.00031721 483.9810736788813 55.945 0.28485 59.423 59.212 59.497 3.4785 -0.053425 0.00056592 NaN 0.094841 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 128410 + 39780 21928 25159 25170 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 483.646391 1447.91734 0.076792 3.714E-05 0.073599 3.5596E-05 0.15039 7.2736E-05 483.9807236561522 56.332 0.14738 59.504 59.448 59.595 3.1721 0.02713 -0.00012751 NaN 0.094841 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 72402 + 39781 21928 25159 25170 0.21130179246574698 RYKKKLLCRIK 11 Unmodified _RYKKKLLCRIK_ 0 0 0 REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF REV__ENST00000367450.7_1_1:192992066-192992111:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 483.646391 1447.91734 0.1862 9.0054E-05 0.084182 4.0715E-05 0.27038 0.00013077 483.6463784545172 50.44 0.28103 53.666 53.528 53.809 3.2262 -0.0059868 -0.00031313 NaN 0.094841 21 15 3 NaN NaN NaN NaN 0 NaN NaN 0 103350 + 39782 21928 25159 25170 0.21130179246574698 RYKRRYMIKR 10 Unmodified _RYKRRYMIKR_ 0 0 0 REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|14|1|sense REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 490.6283874511719 3 490.62599 1468.85614 NaN NaN NaN NaN NaN NaN NaN 103.19 1 106.8 106.3 107.3 3.6164 0 0 0 0.53105 1 24876 24876 0.13989 0.04505 1 + 39783 27630 25160 25171 45306 45306 0.14046667267120938 RYKRRYMIKR 10 Unmodified _RYKRRYMIKR_ 0 0 0 REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|14|1|sense REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 490.6270751953125 3 490.62599 1468.85614 NaN NaN NaN NaN NaN NaN NaN 103.23 1 106.85 106.35 107.35 3.6209 0 0 0 0.53105 1 24889 24889 1.7423 0.63252 1 + 39784 27630 25160 25171 45307 45307 0.14046667267120938 RYKTSGEPARA 11 Unmodified _RYKTSGEPARA_ 0 0 0 REV__L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|36|2|sense REV__L1PA10_dup993|chr2:241422421-241424904:+|1.080834215359558|0.0440487816660072|4.62|151.0|36|2|sense MSMS UPN48_class_I_Rep_2 6 618.3292236328125 2 618.328193 1234.64183 NaN NaN NaN NaN NaN NaN NaN 46.016 1 49.774 49.274 50.274 3.7579 0 0 0 0.38417 1 8945 8945 2.4985 0.43874 1 + 39785 28994 25161 25172 45308 45308 0.03389818652226495 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS UPN48_class_I_Rep_1 5 531.3032836914062 2 531.303124 1060.5917 0.44101 0.00023431 -0.61383 -0.00032613 -0.17282 -9.1819E-05 531.3027457274211 64.067 1.1017 67.525 67.233 68.335 3.4578 137 84 3 0 0 0 0.074399 4 14496 14456;14496;14539;14637 39.95 1.7741 1 735970 39786 2667 25162 25173 45309;45310;45311;45312 45310 0.06382315994369492 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS UPN48_class_I_Rep_2 6 531.3031616210938 2 531.303124 1060.5917 0.46425 0.00024666 -0.39416 -0.00020942 0.070091 3.7239E-05 531.3028001572092 64.159 0.81971 67.634 67.183 68.002 3.4743 104 62 2 0 0 0 0.081756 2 14469 14426;14469 38.176 2.1868 1 533310 39787 2667 25162 25173 45313;45314 45314 0.06382315994369492 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS UPN48_class_I_Rep_3 7 531.3030395507812 2 531.303124 1060.5917 0.52827 0.00028067 -1.1993 -0.00063719 -0.67103 -0.00035652 531.3022042544382 63.857 1.8915 67.365 67.01 68.901 3.5083 197 154 2 0 0 0 0.048662 3 14320 14283;14320;14358 49.554 7.5987 1 679050 39788 2667 25162 25173 45315;45316;45317 45316 0.06382315994369492 RYLCCLHF 8 Unmodified _RYLCCLHF_ 0 0 0 L1ME3G_dup5519|chr5:151469098-151469747:-|1.2854097255365469|0.1593523705771134|3.01|151.0|25|3|sense L1ME3G_dup5519|chr5:151469098-151469747:-|1.2854097255365469|0.1593523705771134|3.01|151.0|25|3|sense L1ME3G_dup5519|chr5:151469098-151469747:-|1.2854097255365469|0.1593523705771134|3.01|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 527.7516479492188 2 527.75169 1053.48883 NaN NaN NaN NaN NaN NaN NaN 114.29 1 114.29 113.79 114.79 0 0 0 0 0.40738 1 28243 28243 0.79363 0 1 39789 12844 25163 25174 45318 45318 -0.035777912695948544 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MULTI-MSMS UPN48_class_I_Rep_1 5 574.8193969726562 2 574.819138 1147.62372 0.45172 0.00025966 -0.18673 -0.00010733 0.26499 0.00015232 574.8190429917117 68.933 1.297 72.388 71.924 73.221 3.4548 287 100 4 0 0 0 0.0053074 7 15892 15852;15892;15930;15967;16005;16048;16120 107.1 27.503 1 3738300 39790 966 25164 25175 45319;45320;45321;45322;45323;45324;45325 45320 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MULTI-MSMS UPN48_class_I_Rep_2 6 574.8192138671875 2 574.819138 1147.62372 0.48518 0.00027889 -0.16777 -9.6437E-05 0.31741 0.00018245 574.8190449432877 68.674 1.0202 72.182 71.795 72.815 3.5083 265 84 4 0 0 0 0.0053074 8 15943 15756;15791;15824;15863;15902;15943;15980;16019 100.09 28.168 1 3972800 39791 966 25164 25175 45326;45327;45328;45329;45330;45331;45332;45333 45331 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MSMS UPN48_class_I_Rep_3 7 574.8193359375 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 68.752 1 72.262 71.762 72.762 3.5094 0 0 0 3.2119E-24 1 15786 15786 100.09 28.168 1 39792 966 25164 25175 45334 45334 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MSMS UPN48_class_I_Rep_3 7 574.8192138671875 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 68.871 1 72.381 71.881 72.881 3.5094 0 0 0 0.00028483 1 15823 15823 65.474 11.641 1 39793 966 25164 25175 45335 45335 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MSMS UPN48_class_I_Rep_3 7 574.8192138671875 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 69.007 1 72.516 72.016 73.016 3.5094 0 0 0 0.036539 1 15864 15864 41.956 3.78 1 39794 966 25164 25175 45336 45336 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MSMS UPN48_class_I_Rep_3 7 574.8189697265625 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 69.126 1 72.635 72.135 73.135 3.5094 0 0 0 0.036539 1 15901 15901 41.956 5.8285 1 39795 966 25164 25175 45337 45337 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 574.819138 1147.62372 0.53608 0.00030815 -0.30131 -0.0001732 0.23476 0.00013495 574.8190213835921 68.609 1.0618 72.119 71.643 72.705 3.5094 -0.11084 -0.00011388 NaN 107.1 248 84 4 NaN NaN NaN NaN 0 NaN NaN 0 5525600 39796 966 25164 25175 0.055816836775193224 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN48_class_I_Rep_1 5 600.330810546875 2 600.330205 1198.64586 0.42545 0.00025541 -0.079646 -4.7814E-05 0.34581 0.0002076 600.3301286703099 43.577 0.89588 47.087 46.771 47.667 3.5103 119 77 2 0 0 0 0.16799 3 8227 8190;8227;8270 23.79 4.4278 1 284420 39797 4382 25165 25176 45338;45339;45340 45339 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN48_class_I_Rep_2 6 600.8318481445312 2 600.330205 1198.64586 0.41438 0.00024876 -0.11463 -6.8815E-05 0.29975 0.00017995 600.3301238068926 43.172 0.96346 46.934 46.526 47.489 3.7617 162 75 3 0 0 0 0.086321 2 8072 8072;8191 37.075 14.338 1 335880 39798 4382 25165 25176 45341;45342 45341 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN48_class_I_Rep_3 7 600.3302001953125 2 600.330205 1198.64586 0.45371 0.00027238 0.26087 0.00015661 0.71458 0.00042899 600.330116429307 43.344 0.85986 46.982 46.632 47.492 3.6385 136 64 3 0 0 0 0.12795 4 8051 7973;8051;8137;8172 28.495 4.7047 1 297620 39799 4382 25165 25176 45343;45344;45345;45346 45344 0.05447908145947622 RYLEVEPVSR 10 Unmodified _RYLEVEPVSR_ 0 0 0 ENSG00000133935|ENST00000256319|ERG28 ENSG00000133935|ENST00000256319|ERG28 ENSG00000133935|ENST00000256319|ERG28 MULTI-MSMS UPN46_class_I_Rep_3 1 624.3408203125 2 624.340769 1246.66699 0.65022 0.00040596 -0.07091 -4.4272E-05 0.57931 0.00036169 624.3405758303513 40.614 0.37418 40.614 40.414 40.788 0 67 40 2 0 0 0 0.22147 2 7883 7883;7926 41.347 17.557 1 218600 39800 2823 25166 25177 45347;45348 45347 0.05351873454787892 RYLFALQVKQ 10 Unmodified _RYLFALQVKQ_ 0 0 0 ENST00000601853.5_1_13:98996033-99030171:+|nuORF;ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1 ENST00000601853.5_1_13:98996033-99030171:+|nuORF ENST00000601853.5_1_13:98996033-99030171:+|nuORF MSMS UPN47_class_I_Rep_2 3 633.372314453125 2 633.371872 1264.72919 NaN NaN NaN NaN NaN NaN NaN 86.138 1 89.571 89.071 90.071 3.4329 0 0 0 0.53105 1 21427 21427 1.4819 0 1 39801 3629 25167 25178 45349 45349 0.10741644593804267 RYLFATICQN 10 Unmodified _RYLFATICQN_ 0 0 0 REV__L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|60|2|sense REV__L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|60|2|sense MSMS UPN48_class_I_Rep_2 6 614.80908203125 2 614.81079 1227.60703 NaN NaN NaN NaN NaN NaN NaN 31.938 1 35.579 35.079 36.079 3.641 0 0 0 0.53105 1 4870 4870 1.3295 0.72803 1 + 39802 30147 25168 25179 45350 45350 0.002328595199060146 RYLFYSSF 8 Unmodified _RYLFYSSF_ 0 0 0 ENST00000505715.1_1_4:79844972-79847734:-|nuORF ENST00000505715.1_1_4:79844972-79847734:-|nuORF ENST00000505715.1_1_4:79844972-79847734:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 541.7669067382812 2 541.768917 1081.52328 0.47917 0.0002596 -0.77062 -0.0004175 -0.29144 -0.00015789 541.7665899702919 56.463 1.0163 59.764 59.237 60.253 3.3009 176 70 4 0 0 0 0.82752 1 12963 12963 8.5933 0 1 589340 39803 7151 25169 25180 45351 45351 -0.014219285855006092 RYLGKNWSF 9 Unmodified _RYLGKNWSF_ 0 0 0 nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 MULTI-MSMS UPN48_class_I_Rep_1 5 585.807373046875 2 585.806365 1169.59818 0.40385 0.00023658 -0.058949 -3.4533E-05 0.3449 0.00020204 585.8063005452036 46.734 0.97421 50.253 49.802 50.776 3.5192 92 60 2 0 0 0 0.081756 2 9179 9142;9179 38.176 16.73 1 241890 39804 4960 25170 25181 45352;45353 45353 0.020162539457487583 RYLGKNWSF 9 Unmodified _RYLGKNWSF_ 0 0 0 nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 585.806365 1169.59818 0.38998 0.00022845 -0.26274 -0.00015392 0.12724 7.4537E-05 585.8062016841469 46.202 0.88978 49.96 49.732 50.622 3.7579 -0.15354 -0.00013647 NaN 38.176 80 57 2 NaN NaN NaN NaN 0 NaN NaN 0 214620 39805 4960 25170 25181 0.020162539457487583 RYLGKNWSF 9 Unmodified _RYLGKNWSF_ 0 0 0 nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 nc|ENSG00000182557|Q6ZMD2-2|SPNS3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 585.806365 1169.59818 0.42243 0.00024746 -0.21534 -0.00012615 0.20709 0.00012132 585.8061545173177 46.492 0.76773 50.129 49.8 50.568 3.6363 0.01464 -8.0937E-05 NaN 38.176 58 47 2 NaN NaN NaN NaN 0 NaN NaN 0 145210 39806 4960 25170 25181 0.020162539457487583 RYLIKLLLLRG 11 Unmodified _RYLIKLLLLRG_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MSMS UPN47_class_I_Rep_2 3 453.3053894042969 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 119.9 1 123.38 122.88 123.88 3.4793 0 0 0 0.38417 1 29386 29386 0.094841 0.094841 1 39807 3060 25171 25182 45354 45354 0.23275331858394566 RYLKKKIPKYL 11 Unmodified _RYLKKKIPKYL_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 484.3150939941406 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 56.41 1 59.711 59.211 60.211 3.3009 0 0 0 0.38417 1 12911 12911 0.094841 0 1 39808 9190 25172 25183 45355 45355 0.216636010298771 RYLKKKIPKYL 11 Unmodified _RYLKKKIPKYL_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 483.64642333984375 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 83.091 1 86.441 85.941 86.941 3.35 0 0 0 0.38417 1 20834 20834 0.094841 0 1 39809 9190 25172 25183 45356 45356 0.216636010298771 RYLKKKIPKYL 11 Unmodified _RYLKKKIPKYL_ 0 0 0 L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense L1M5_dup48440|chr17:45575929-45576392:+|3.089448965030335|0.1253652248760016|4.62|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 483.9810791015625 3 483.981657 1448.92314 NaN NaN NaN NaN NaN NaN NaN 107 1 110.68 110.18 111.18 3.6783 0 0 0 0.38417 1 25282 25282 0.094841 0 1 39810 9190 25172 25183 45357 45357 0.216636010298771 RYLLKKREDT 10 Unmodified _RYLLKKREDT_ 0 0 0 L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|2|1|sense L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|2|1|sense L1ME1_dup30827|chr22:49611215-49611811:-|1.1302497747349407|0.0133721255757658|6.4|149.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2589111328125 3 441.257738 1320.75138 -0.075593 -3.3356E-05 1.1619 0.00051269 1.0863 0.00047933 441.5925830004175 31.037 0.32605 31.037 30.839 31.165 0 43 27 2 0 0 0 0.56034 1 5124 5124 3.5871 0.95582 1 118330 39811 12391 25173 25184 45358 45358 0.10383824271548292 RYLLTQELL 9 Unmodified _RYLLTQELL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN48_class_I_Rep_3 7 574.8374633789062 2 574.837331 1147.66011 0.50743 0.00029169 0.21603 0.00012418 0.72346 0.00041587 574.8371782946068 65.161 0.27744 68.669 68.49 68.767 3.5077 27 17 2 0 0 0 0.2924 1 14713 14713 14.405 2.1647 1 75208 39812 1655 25174 25185 45359 45359 0.09218560574208823 RYLLYYYG 8 Unmodified _RYLLYYYG_ 0 0 0 ENSG00000238205|ENST00000423387|MPC1L ENSG00000238205|ENST00000423387|MPC1L ENSG00000238205|ENST00000423387|MPC1L MSMS UPN48_class_I_Rep_2 6 555.7845458984375 2 555.784567 1109.55458 NaN NaN NaN NaN NaN NaN NaN 27.5 1 31.131 30.631 31.631 3.6311 0 0 0 0.40738 1 3651 3651 0.79363 0 1 39813 5694 25175 25186 45360 45360 0.004186444486094842 RYLMLMDW 8 Unmodified _RYLMLMDW_ 0 0 0 L1MA4A_dup4420|chr11:73042224-73043270:-|2.784042340164345|0.0269097389348683|6.69|151.0|30|3|sense L1MA4A_dup4420|chr11:73042224-73043270:-|2.784042340164345|0.0269097389348683|6.69|151.0|30|3|sense L1MA4A_dup4420|chr11:73042224-73043270:-|2.784042340164345|0.0269097389348683|6.69|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 564.2747802734375 2 564.272455 1126.53036 NaN NaN NaN NaN NaN NaN NaN 118.34 1 118.34 117.84 118.84 0 0 0 0 0.40746 1 29372 29372 0.69038 0 1 39814 9815 25176 25187 45361 45361 -0.02784655300911254 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS UPN48_class_I_Rep_1 5 606.7987060546875 2 606.798403 1211.58225 0.54127 0.00032844 0.018568 1.1267E-05 0.55984 0.00033971 606.7983300086528 58.37 0.99362 61.857 61.381 62.375 3.487 146 60 3 0 0 0 0.0065234 6 12706 12628;12667;12706;12750;12792;12833 74.2 38.073 1 973370 39815 1278 25177 25188 45362;45363;45364;45365;45366;45367 45364 -0.015074970817977373 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS UPN48_class_I_Rep_2 6 606.7986450195312 2 606.798403 1211.58225 0.58138 0.00035278 -0.029546 -1.7928E-05 0.55183 0.00033485 606.7982983300044 58.243 0.94197 61.741 61.403 62.345 3.4987 143 53 3 0 0 0 0.0055684 7 12709 12586;12591;12631;12670;12709;12752;12804 87.258 37.704 1 1454400 39816 1278 25177 25188 45368;45369;45370;45371;45372;45373;45374 45372 -0.015074970817977373 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS UPN48_class_I_Rep_3 7 606.7987670898438 2 606.798403 1211.58225 0.49315 0.00029924 0.081358 4.9368E-05 0.57451 0.00034861 606.7983725674393 58.206 0.99972 61.737 61.249 62.248 3.5317 179 64 4 0 0 0 0.016816 6 12559 12474;12521;12559;12595;12633;12678 65.474 30.542 1 1243200 39817 1278 25177 25188 45375;45376;45377;45378;45379;45380 45377 -0.015074970817977373 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENST00000207636.9_1_22:19951681-19956256:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 552.3267822265625 2 552.326599 1102.63865 0.54378 0.00030034 -0.026371 -1.4566E-05 0.51741 0.00028578 552.326500297324 70.272 0.9862 73.732 73.244 74.23 3.4598 153 87 3 0 0 0 0.081756 2 16314 16276;16314 38.176 2.0485 1 1797100 39818 1400 25178 25189 45381;45382 45382 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENST00000207636.9_1_22:19951681-19956256:+|nuORF MSMS UPN48_class_I_Rep_1 5 552.32666015625 2 552.326599 1102.63865 NaN NaN NaN NaN NaN NaN NaN 70.623 1 74.082 73.582 74.582 3.4598 0 0 0 0.18866 1 16470 16470 17.113 0 1 39819 1400 25178 25189 45383 45383 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENST00000207636.9_1_22:19951681-19956256:+|nuORF MSMS UPN48_class_I_Rep_1 5 552.3271484375 2 552.326599 1102.63865 NaN NaN NaN NaN NaN NaN NaN 70.744 1 74.203 73.703 74.703 3.4598 0 0 0 0.2408 1 16503 16503 13.906 0 1 39820 1400 25178 25189 45384 45384 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENST00000207636.9_1_22:19951681-19956256:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 552.3267822265625 2 552.326599 1102.63865 0.4872 0.00026909 0.061007 3.3696E-05 0.54821 0.00030279 552.3265313074568 69.983 1.0726 73.504 73.147 74.22 3.5216 263 99 4 0 0 0 0.081756 2 16310 16236;16310 38.176 3.5319 1 1776600 39821 1400 25178 25189 45385;45386 45386 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENST00000207636.9_1_22:19951681-19956256:+|nuORF MSMS UPN48_class_I_Rep_2 6 552.3265380859375 2 552.326599 1102.63865 NaN NaN NaN NaN NaN NaN NaN 70.683 1 74.218 73.718 74.718 3.5359 0 0 0 0.37692 1 16453 16453 6.2058 0 1 39822 1400 25178 25189 45387 45387 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENST00000207636.9_1_22:19951681-19956256:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 552.3267822265625 2 552.326599 1102.63865 0.4479 0.00024738 0.04614 2.5484E-05 0.49404 0.00027287 552.3265425024151 70.072 0.82777 73.585 73.072 73.9 3.5128 225 68 4 0 0 0 0.048662 2 16212 16096;16212 49.554 5.696 1 1922400 39823 1400 25178 25189 45388;45389 45389 0.09143175545523263 RYLPFLHA 8 Unmodified _RYLPFLHA_ 0 0 0 REV__ENST00000560518.1_1_15:52472905-52473223:+|nuORF REV__ENST00000560518.1_1_15:52472905-52473223:+|nuORF MSMS UPN46_class_I_Rep_3 1 508.78509521484375 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 16.076 1 16.076 15.576 16.576 0 0 0 0 0.40738 1 1035 1035 0.79363 0 1 + 39824 23019 25179 25190 45390 45390 0.05317787750925618 RYLPHYFEAT 10 Unmodified _RYLPHYFEAT_ 0 0 0 L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|27|1|anti-sense L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|27|1|anti-sense L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 432.88507080078125 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 64.253 1 67.509 67.009 68.009 3.2556 0 0 0 0.53105 1 15295 15295 0.69767 0 1 39825 12039 25180 25191 45391 45391 -0.006117980909721155 RYLPHYFEAT 10 Unmodified _RYLPHYFEAT_ 0 0 0 L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|27|1|anti-sense L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|27|1|anti-sense L1MD2_dup8534|chr14:45222468-45223066:-|1.9374206344125813|0.0510788662482251|5.25|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 432.88507080078125 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 64.335 1 67.509 67.009 68.009 3.1741 0 0 0 0.53105 1 15380 15380 0.69767 0 1 39826 12039 25180 25191 45392 45392 -0.006117980909721155 RYLQEREQ 8 Unmodified _RYLQEREQ_ 0 0 0 nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23 nc|ENSG00000125648|Q9BV35-4|SLC25A23 nc|ENSG00000125648|Q9BV35-4|SLC25A23 MSMS UPN47_class_I_Rep_1 2 561.2877807617188 2 561.288537 1120.56252 NaN NaN NaN NaN NaN NaN NaN 36.883 1 40.553 40.053 41.053 3.6692 0 0 0 0.40625 1 6936 6936 2.3027 0 1 39827 2507 25181 25192 45393 45393 0.0070617169808429026 RYLQTLTTI 9 Unmodified _RYLQTLTTI_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS UPN48_class_I_Rep_1 5 555.3236694335938 2 554.821681 1107.62881 0.53342 0.00029595 0.23804 0.00013207 0.77145 0.00042802 554.8218094273309 54.813 0.61082 58.321 57.947 58.558 3.5082 83 43 2 0 0 0 0.16799 1 11595 11595 23.79 3.3752 1 282900 39828 3492 25182 25193 45394 45394 0.0792998754011478 RYLQTLTTI 9 Unmodified _RYLQTLTTI_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS UPN48_class_I_Rep_3 7 554.8215942382812 2 554.821681 1107.62881 0.2593 0.00014387 0.40033 0.00022211 0.65963 0.00036598 554.8218310363584 54.711 0.67411 58.28 57.899 58.573 3.5694 89 45 3 0 0 0 0.062142 2 11515 11475;11515 43.772 7.4096 1 237100 39829 3492 25182 25193 45395;45396 45396 0.0792998754011478 RYLRHFQSG 9 Unmodified _RYLRHFQSG_ 0 0 0 REV__MSTA_dup17643|chr17:72826060-72826443:+|1.1075880458288034|0.0273561193337769|5.34|150.0|16|1|anti-sense REV__MSTA_dup17643|chr17:72826060-72826443:+|1.1075880458288034|0.0273561193337769|5.34|150.0|16|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3059692382812 2 582.307064 1162.59957 NaN NaN NaN NaN NaN NaN NaN 43.864 1 47.105 46.605 47.605 3.2419 0 0 0 0.39518 1 9143 9143 1.8442 0.36234 1 + 39830 31843 25183 25194 45397 45397 0.024778880345138532 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-SECPEP UPN48_class_I_Rep_1 5 575.7908325195312 2 575.311146 1148.60774 0.54287 0.00031232 -0.88846 -0.00051114 -0.34559 -0.00019882 575.3106031240882 59.261 0.48965 62.741 62.48 62.97 3.4801 40 28 2 0 0 0 0.09177 1 13007 13007 23.79 8.5413 1 171670 39831 1310 25184 25195 45398 45398 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-SECPEP UPN48_class_I_Rep_2 6 575.7913818359375 2 575.311146 1148.60774 0.56357 0.00032423 -0.48347 -0.00027815 0.080092 4.6078E-05 575.3109215777082 59.24 0.37193 62.726 62.502 62.874 3.4868 38 23 2 0 0 0 0.10553 1 12971 12971 18.373 3.7914 1 121000 39832 1310 25184 25195 45399 45399 0.03937977440614304 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS UPN48_class_I_Rep_1 5 560.8395385742188 2 560.839874 1119.66519 0.44495 0.00024954 -0.33661 -0.00018879 0.10833 6.0758E-05 560.8395919446408 47.168 0.60618 50.69 50.371 50.977 3.5219 59 37 2 0 0 0 0.19147 3 9327 9243;9327;9373 21.537 4.4241 1 182490 39833 2172 25185 25196 45400;45401;45402 45401 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS UPN48_class_I_Rep_2 6 561.3419189453125 2 560.839874 1119.66519 0.399 0.00022377 -0.080384 -4.5082E-05 0.31862 0.00017869 560.8397268702832 46.877 0.61529 50.626 50.279 50.894 3.7494 85 42 3 0 0 0 0.21414 3 9202 9156;9202;9248 19.362 4.1135 1 188830 39834 2172 25185 25196 45403;45404;45405 45404 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS UPN48_class_I_Rep_3 7 560.8421020507812 2 560.839874 1119.66519 0.34357 0.00019269 0.024756 1.3884E-05 0.36833 0.00020657 560.8397771377325 47.073 0.63493 50.709 50.311 50.946 3.6363 64 42 2 0 0 0 0.22932 4 9243 9145;9187;9238;9243 18.373 4.7582 1 215940 39835 2172 25185 25196 45406;45407;45408;45409 45409 0.11014864436833705 RYLWKPFC 8 Unmodified _RYLWKPFC_ 0 0 0 REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|143|2|anti-sense REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|143|2|anti-sense MSMS UPN48_class_I_Rep_2 6 556.7913208007812 2 556.78913 1111.56371 NaN NaN NaN NaN NaN NaN NaN 30.201 1 33.836 33.336 34.336 3.6351 0 0 0 0.40738 1 4385 4385 0.79363 0.10326 1 + 39836 26482 25186 25197 45410 45410 0.012387145332922955 RYLYHFYL 8 Unmodified _RYLYHFYL_ 0 0 0 Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense MSMS UPN48_class_I_Rep_3 7 587.8037109375 2 587.805834 1173.59712 NaN NaN NaN NaN NaN NaN NaN 44.273 1 47.911 47.411 48.411 3.6372 0 0 0 0.40604 1 8342 8342 2.5775 0 1 39837 33390 25187 25198 45411 45411 0.0172603957685169 RYMTFLHVY 9 Unmodified _RYMTFLHVY_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MSMS UPN48_class_I_Rep_2 6 615.3111572265625 2 615.310426 1228.6063 NaN NaN NaN NaN NaN NaN NaN 32.841 1 36.491 35.991 36.991 3.6497 0 0 0 0.39428 1 5116 5116 2.0598 0 1 39838 5186 25188 25199 45412 45412 0.0011406487085423578 RYNHKDQF 8 Unmodified _RYNHKDQF_ 0 0 0 REV__L1MC2_dup3148|chr9:26854603-26855618:+|1.5622672048828798|0.0577530955543476|4.76|151.0|32|3|sense REV__L1MC2_dup3148|chr9:26854603-26855618:+|1.5622672048828798|0.0577530955543476|4.76|151.0|32|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.2693481445312 2 554.270147 1106.52574 0.51659 0.00028633 -1.527 -0.00084637 -1.0104 -0.00056003 554.2690982575399 52.277 0.3647 55.483 55.223 55.588 3.2055 29 24 2 0 0 0 0.82752 1 11695 11695 7.9102 1.187 1 53545 + 39839 26658 25189 25200 45413 45413 -0.023260801278183862 RYNYSWIVQ 9 Unmodified _RYNYSWIVQ_ 0 0 0 REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|63|2|sense REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|63|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 615.3114624023438 2 614.809105 1227.60366 0.48675 0.00029926 -0.46068 -0.00028323 0.026074 1.6031E-05 614.8085856278884 32.698 0.3964 36.348 36.15 36.546 3.6497 68 47 2 0 0 0 0.48846 1 5065 5065 1.8442 0.19162 1 87399 + 39840 25272 25190 25201 45414 45414 -0.0010406726246401377 RYNYSWIVQ 9 Unmodified _RYNYSWIVQ_ 0 0 0 REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|63|2|sense REV__L1MA4A_dup3295|chr9:87689320-87692952:-|3.2305423438912326|0.1692991527896335|4.25|151.0|63|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 614.8096923828125 2 614.809105 1227.60366 0.4728 0.00029068 -0.37326 -0.00022949 0.099537 6.1196E-05 614.8089542519751 32.678 0.37173 36.368 36.16 36.532 3.6896 68 45 2 0 0 0 0.46434 2 4983 4949;4983 4.3292 0.60125 1 67342 + 39841 25272 25190 25201 45415;45416 45416 -0.0010406726246401377 RYPAIIYN 8 Unmodified _RYPAIIYN_ 0 0 0 ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1 ENST00000507477.1_1_17:47780142-47780651:-|nuORF ENST00000507477.1_1_17:47780142-47780651:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 505.796875 2 505.276909 1008.53927 0.34385 0.00017374 0.19351 9.7777E-05 0.53736 0.00027152 505.27692586906477 63.976 0.28186 67.451 67.35 67.632 3.4743 16 16 2 0 0 0 0.72333 1 14430 14430 2.3027 0.4585 1 63133 39842 2348 25191 25202 45417 45417 0.03533777651421133 RYPAIIYN 8 Unmodified _RYPAIIYN_ 0 0 0 ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1 ENST00000507477.1_1_17:47780142-47780651:-|nuORF ENST00000507477.1_1_17:47780142-47780651:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 505.276909 1008.53927 0.33393 0.00016873 0.055446 2.8015E-05 0.38938 0.00019674 505.2769799634058 63.753 0.20728 67.211 67.131 67.338 3.4578 -0.11991 -5.192E-05 NaN 2.3027 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 68415 39843 2348 25191 25202 0.03533777651421133 RYPCWPGP 8 Unmodified _RYPCWPGP_ 0 0 0 ENST00000245865.10_2_17:61781645-61782047:-|nuORF;nc|ENSG00000266173|Q7RTN6-2|STRADA ENST00000245865.10_2_17:61781645-61782047:-|nuORF ENST00000245865.10_2_17:61781645-61782047:-|nuORF MSMS UPN47_class_I_Rep_1 2 488.2429504394531 2 488.228905 974.443257 NaN NaN NaN NaN NaN NaN NaN 23.699 1 27.429 26.929 27.929 3.7298 0 0 0 0.40581 1 2975 2975 2.8892 0.31174 1 39844 5908 25192 25203 45418 45418 -0.04498693460323011 RYPCWPGP 8 Unmodified _RYPCWPGP_ 0 0 0 ENST00000245865.10_2_17:61781645-61782047:-|nuORF;nc|ENSG00000266173|Q7RTN6-2|STRADA ENST00000245865.10_2_17:61781645-61782047:-|nuORF ENST00000245865.10_2_17:61781645-61782047:-|nuORF MSMS UPN47_class_I_Rep_1 2 488.23028564453125 2 488.228905 974.443257 NaN NaN NaN NaN NaN NaN NaN 23.867 1 27.597 27.097 28.097 3.7298 0 0 0 0.40581 1 3024 3024 2.8892 0.31174 1 39845 5908 25192 25203 45419 45419 -0.04498693460323011 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENST00000567040.5_1_16:30087698-30094972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 573.8353271484375 2 573.835123 1145.65569 0.39634 0.00022743 -0.0586 -3.3627E-05 0.33774 0.00019381 573.8350169371632 48.925 1.0466 52.449 52.096 53.142 3.5239 200 74 4 0 0 0 0.0068778 7 9833 9744;9755;9797;9833;9872;9911;9949 85.642 47.668 1 1359000 39846 3555 25193 25204 45420;45421;45422;45423;45424;45425;45426 45423 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENST00000567040.5_1_16:30087698-30094972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 573.8352661132812 2 573.835123 1145.65569 0.40111 0.00023017 -0.056709 -3.2542E-05 0.3444 0.00019763 573.8350077287413 48.683 1.0581 52.4 52.057 53.115 3.7175 214 74 4 0 0 0 0.015319 9 9837 9673;9713;9753;9796;9837;9878;9921;9931;9971 66.457 28.483 1 980080 39847 3555 25193 25204 45427;45428;45429;45430;45431;45432;45433;45434;45435 45431 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENST00000567040.5_1_16:30087698-30094972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 573.8352661132812 2 573.835123 1145.65569 0.37895 0.00021746 -0.045494 -2.6106E-05 0.33346 0.00019135 573.8350285050418 48.924 1.0866 52.554 52.141 53.227 3.6291 205 81 3 0 0 0 0.015319 7 9741 9662;9701;9741;9781;9822;9861;9900 66.457 35.82 1 1058900 39848 3555 25193 25204 45436;45437;45438;45439;45440;45441;45442 45438 0.08869096151329359 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN48_class_I_Rep_1 5 581.7855834960938 2 581.78563 1161.55671 0.43759 0.00025458 1.2444 0.00072399 1.682 0.00097857 581.785209012977 38.803 0.10531 42.308 42.255 42.36 3.5048 9 7 2 0 0 0 0.41587 1 6778 6778 7.1017 3.1573 1 62182 39849 3109 25194 25205 45443 45443 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN48_class_I_Rep_1 5 581.7852783203125 2 581.78563 1161.55671 0.43552 0.00025338 -0.56163 -0.00032675 -0.12611 -7.337E-05 581.7851876115803 39.192 0.92993 42.697 42.37 43.3 3.5048 159 88 2 0 0 0 0.279 4 6853 6853;6892;6930;6967 15.248 5.66 1 263130 39850 3109 25194 25205 45444;45445;45446;45447 45444 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN48_class_I_Rep_2 6 581.7855834960938 2 581.78563 1161.55671 0.43609 0.00025371 -0.36623 -0.00021307 0.069857 4.0642E-05 581.7852911089325 38.82 0.93967 42.55 42.216 43.155 3.7297 205 91 3 0 0 0 0.11648 7 6811 6737;6773;6811;6850;6886;6924;6958 30.703 18.463 1 357730 39851 3109 25194 25205 45448;45449;45450;45451;45452;45453;45454 45450 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN48_class_I_Rep_2 6 581.7852172851562 2 581.78563 1161.55671 NaN NaN NaN NaN NaN NaN NaN 39.483 1 43.213 42.713 43.713 3.7297 0 0 0 0.36857 1 7011 7011 7.1017 0.89594 1 39852 3109 25194 25205 45455 45455 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN48_class_I_Rep_3 7 581.7854614257812 2 581.78563 1161.55671 0.40173 0.00023372 -0.47858 -0.00027843 -0.076847 -4.4709E-05 581.7852682824004 38.9 0.95581 42.555 42.268 43.224 3.6557 163 88 2 0 0 0 0.24411 7 6708 6666;6708;6748;6784;6827;6870;6907 17.443 9.5468 1 267780 39853 3109 25194 25205 45456;45457;45458;45459;45460;45461;45462 45457 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS UPN48_class_I_Rep_3 7 581.7852172851562 2 581.78563 1161.55671 NaN NaN NaN NaN NaN NaN NaN 39.588 1 43.244 42.744 43.744 3.6557 0 0 0 0.39036 1 6943 6943 2.9952 0 1 39854 3109 25194 25205 45463 45463 -0.017609268135856837 RYPDTIALTF 10 Unmodified _RYPDTIALTF_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MSMS UPN48_class_I_Rep_2 6 598.8195190429688 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 65.909 1 69.396 68.896 69.896 3.4866 0 0 0 0.53105 1 15017 15017 4.5289 0 1 39855 3039 25195 25206 45464 45464 0.03373683677500594 RYPDTIALTF 10 Unmodified _RYPDTIALTF_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MSMS UPN48_class_I_Rep_3 7 598.8184814453125 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 66.016 1 69.524 69.024 70.024 3.5077 0 0 0 0.53105 1 14963 14963 10.151 0 1 39856 3039 25195 25206 45465 45465 0.03373683677500594 RYPDTIALTF 10 Unmodified _RYPDTIALTF_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MSMS UPN48_class_I_Rep_3 7 598.8185424804688 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 66.117 1 69.625 69.125 70.125 3.5077 0 0 0 0.53105 1 14994 14994 10.151 0 1 39857 3039 25195 25206 45466 45466 0.03373683677500594 RYPDTIALTF 10 Unmodified _RYPDTIALTF_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MSMS UPN48_class_I_Rep_3 7 598.81982421875 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 66.203 1 69.71 69.21 70.21 3.5077 0 0 0 0.53105 1 15020 15020 4.1895 0 1 39858 3039 25195 25206 45467 45467 0.03373683677500594 RYPENVEW 8 Unmodified _RYPENVEW_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MSMS UPN48_class_I_Rep_1 5 546.7591552734375 2 546.759081 1091.50361 NaN NaN NaN NaN NaN NaN NaN 22.755 1 26.315 25.815 26.815 3.5605 0 0 0 0.40625 1 2267 2267 2.3027 0 1 39859 5034 25196 25207 45468 45468 -0.038483045962493634 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS UPN48_class_I_Rep_2 6 618.3302612304688 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 45.789 1 49.547 49.047 50.047 3.7579 0 0 0 0.53105 1 8876 8876 2.7352 0.23671 1 39860 1486 25197 25208 45469 45469 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS UPN48_class_I_Rep_3 7 618.3297119140625 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 46.104 1 49.74 49.24 50.24 3.6369 0 0 0 0.53105 1 8902 8902 2.7352 0.23671 1 39861 1486 25197 25208 45470 45470 0.03791908145922207 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS UPN48_class_I_Rep_1 5 614.8095703125 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 32.581 1 36.108 35.608 36.608 3.5266 0 0 0 0.53105 1 4971 4971 10.8 2.0541 1 39862 1627 25198 25209 45471 45471 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS UPN48_class_I_Rep_1 5 614.8087768554688 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 32.708 1 36.235 35.735 36.735 3.5266 0 0 0 0.53105 1 5006 5006 8.1555 1.4324 1 39863 1627 25198 25209 45472 45472 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS UPN48_class_I_Rep_2 6 614.8096923828125 2 614.809105 1227.60366 0.4896 0.00030101 -0.55491 -0.00034117 -0.065316 -4.0157E-05 614.8086463775139 32.254 0.54529 35.903 35.62 36.165 3.6497 80 60 2 0 0 0 0.52562 1 4999 4999 8.7454 2.5396 1 80007 39864 1627 25198 25209 45473 45473 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS UPN48_class_I_Rep_2 6 614.808349609375 2 614.809105 1227.60366 0.48675 0.00029926 -0.46068 -0.00028323 0.026074 1.6031E-05 614.8085856278884 32.698 0.3964 36.348 36.15 36.546 3.6497 68 47 2 0 0 0 0.55148 1 5109 5109 5.2969 1.7004 1 87399 39865 1627 25198 25209 45474 45474 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS UPN48_class_I_Rep_2 6 614.8092651367188 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 32.96 1 36.609 36.109 37.109 3.6497 0 0 0 0.53105 1 5150 5150 2.9952 0 1 39866 1627 25198 25209 45475 45475 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS UPN48_class_I_Rep_2 6 614.8094482421875 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 33.124 1 36.773 36.273 37.273 3.6497 0 0 0 0.53105 1 5196 5196 2.9952 0 1 39867 1627 25198 25209 45476 45476 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS UPN48_class_I_Rep_3 7 614.8087768554688 2 614.809105 1227.60366 0.47205 0.00029022 -0.60787 -0.00037372 -0.13581 -8.35E-05 614.808655838919 32.227 0.76107 35.928 35.411 36.172 3.7015 114 82 2 0 0 0 0.53414 2 4857 4819;4857 7.609 1.8771 1 97241 39868 1627 25198 25209 45477;45478 45478 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS UPN48_class_I_Rep_3 7 614.80859375 2 614.809105 1227.60366 0.4728 0.00029068 -0.37326 -0.00022949 0.099537 6.1196E-05 614.8089542519751 32.678 0.37173 36.368 36.16 36.532 3.6896 68 45 2 0 0 0 0.56078 1 5028 5028 3.2813 1.2216 1 67342 39869 1627 25198 25209 45479 45479 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS UPN48_class_I_Rep_3 7 614.8099975585938 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 33.161 1 36.85 36.35 37.35 3.6896 0 0 0 0.53105 1 5121 5121 2.9952 0 1 39870 1627 25198 25209 45480 45480 -0.001040672624412764 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_1 5 504.27984619140625 2 504.279649 1006.54475 0.19559 9.863E-05 0.1431 7.2162E-05 0.33868 0.00017079 504.27963693830077 48.298 1.486 51.822 51.271 52.757 3.5239 277 104 4 0 0 0 0.0063213 6 9580 9542;9580;9619;9657;9695;9738 89.401 3.8799 1 2926200 39871 3672 25199 25210 45481;45482;45483;45484;45485;45486 45482 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_2 6 504.2798156738281 2 504.279649 1006.54475 0.20245 0.00010209 0.12849 6.4793E-05 0.33094 0.00016689 504.27964098027024 47.986 1.4224 51.722 51.23 52.652 3.7361 283 99 4 0 0 0 0.0053074 6 9502 9459;9502;9540;9577;9616;9657 89.401 3.8497 1 2944800 39872 3672 25199 25210 45487;45488;45489;45490;45491;45492 45488 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_3 7 504.27972412109375 2 504.279649 1006.54475 0.18208 9.1817E-05 0.11975 6.0389E-05 0.30183 0.00015221 504.27963290801284 48.203 1.1642 51.837 51.328 52.492 3.6339 267 83 4 0 0 0 0.0053074 6 9577 9451;9492;9537;9577;9615;9677 89.401 10.571 1 3051700 39873 3672 25199 25210 45493;45494;45495;45496;45497;45498 45496 0.04173456443231771 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_1 5 613.33251953125 2 613.332413 1224.65027 0.50553 0.00031006 -0.09496 -5.8242E-05 0.41057 0.00025181 613.3322794672234 66.361 0.86278 69.812 69.444 70.307 3.4516 151 57 3 0 0 0 0.16198 5 15167 15129;15167;15211;15248;15289 44.392 21.734 1 713510 39874 3672 25200 25211 45499;45500;45501;45502;45503 45500 0.04693372568840459 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_2 6 613.3323974609375 2 613.332413 1224.65027 0.51285 0.00031455 -0.18465 -0.00011325 0.3282 0.00020129 613.33224467626 66.195 0.83356 69.681 69.373 70.206 3.4866 144 61 3 0 0 0 0.1517 5 15106 15068;15106;15145;15155;15188 51.488 22.993 1 771430 39875 3672 25200 25211 45504;45505;45506;45507;45508 45505 0.04693372568840459 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN48_class_I_Rep_3 7 613.33251953125 2 613.332413 1224.65027 0.61012 0.00037421 -0.32682 -0.00020045 0.2833 0.00017376 613.3321228981944 66.112 0.9113 69.62 69.225 70.136 3.5077 178 68 3 0 0 0 0.15878 4 15017 14930;14970;15017;15094 47.732 16.555 1 762860 39876 3672 25200 25211 45509;45510;45511;45512 45511 0.04693372568840459 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN48_class_I_Rep_1 5 584.3174438476562 2 584.317097 1166.61964 0.40485 0.00023656 -0.15355 -8.9724E-05 0.25129 0.00014684 584.3169475302554 46.348 1.095 49.867 49.435 50.53 3.5192 166 72 3 0 0 0 0.034404 4 9029 8991;9029;9073;9114 55.235 34.781 1 745760 39877 1476;6834 25201 25212 45513;45514;45515;45516 45514 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN48_class_I_Rep_2 6 584.3173217773438 2 584.317097 1166.61964 0.39115 0.00022856 -0.003256 -1.9025E-06 0.3879 0.00022665 584.3170105595902 46.045 1.0109 49.803 49.394 50.405 3.7579 161 68 3 0 0 0 0.013468 5 8972 8885;8931;8972;9018;9074 140.63 47.98 1 680910 39878 1476;6834 25201 25212 45517;45518;45519;45520;45521 45519 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN48_class_I_Rep_3 7 584.3171997070312 2 584.317097 1166.61964 0.4189 0.00024477 -0.067374 -3.9368E-05 0.35153 0.00020541 584.3169581922277 46.209 0.92383 49.846 49.509 50.433 3.6369 148 58 3 0 0 0 0.013215 4 8940 8899;8940;8979;9031 67.838 29.663 1 668500 39879 1476;6834 25201 25212 45522;45523;45524;45525 45523 0.04299638974453046 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF nc|ENSG00000009954|Q9UIG0-2|BAZ1B nc|ENSG00000009954|Q9UIG0-2|BAZ1B MULTI-MSMS UPN48_class_I_Rep_1 5 572.80908203125 2 572.809105 1143.60366 0.39709 0.00022745 0.026077 1.4937E-05 0.42316 0.00024239 572.8089747611233 46.805 0.81743 50.324 49.986 50.804 3.5192 114 51 3 0 0 0 0.048662 5 9187 9108;9151;9187;9233;9288 49.554 25.765 1 382300 39880 749 25202 25213 45526;45527;45528;45529;45530 45528 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF nc|ENSG00000009954|Q9UIG0-2|BAZ1B nc|ENSG00000009954|Q9UIG0-2|BAZ1B MULTI-MSMS UPN48_class_I_Rep_2 6 572.8093872070312 2 572.809105 1143.60366 0.3898 0.00022328 0.0032124 1.8401E-06 0.39302 0.00022512 572.808988385058 46.475 0.81582 50.224 49.884 50.7 3.7494 126 51 3 0 0 0 0.053261 4 9112 9027;9068;9112;9150 47.594 23.805 1 381870 39881 749 25202 25213 45531;45532;45533;45534 45533 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF nc|ENSG00000009954|Q9UIG0-2|BAZ1B nc|ENSG00000009954|Q9UIG0-2|BAZ1B MULTI-MSMS UPN48_class_I_Rep_3 7 572.80908203125 2 572.809105 1143.60366 0.39141 0.0002242 -0.070293 -4.0264E-05 0.32112 0.00018394 572.8090349243976 46.73 0.73213 50.366 49.99 50.723 3.6363 109 44 3 0 0 0 0.088679 5 9067 9024;9067;9108;9149;9189 36.506 10.238 1 361420 39882 749 25202 25213 45535;45536;45537;45538;45539 45536 0.03759932737557392 RYQDILVF 8 Unmodified _RYQDILVF_ 0 0 0 ENSG00000116649|ENST00000376957|SRM ENSG00000116649|ENST00000376957|SRM ENSG00000116649|ENST00000376957|SRM MULTI-MSMS UPN48_class_I_Rep_1 5 527.289306640625 2 527.290017 1052.56548 0.42726 0.00022529 -0.11167 -5.8885E-05 0.31559 0.00016641 527.2897505779715 63.898 0.56149 67.355 67.092 67.654 3.4578 47 40 2 0 0 0 0.82752 1 14439 14439 7.2892 2.0586 1 97746 39883 2192 25203 25214 45540 45540 0.04130046822888289 RYQDILVF 8 Unmodified _RYQDILVF_ 0 0 0 ENSG00000116649|ENST00000376957|SRM ENSG00000116649|ENST00000376957|SRM ENSG00000116649|ENST00000376957|SRM MULTI-MATCH UPN48_class_I_Rep_3 7 2 527.290017 1052.56548 0.48251 0.00025442 -0.27509 -0.00014505 0.20742 0.00010937 527.2897398091125 63.55 0.68505 67.059 66.783 67.468 3.5091 -0.14819 -5.3836E-05 NaN 7.2892 85 55 2 NaN NaN NaN NaN 0 NaN NaN 0 99718 39884 2192 25203 25214 0.04130046822888289 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS UPN48_class_I_Rep_1 5 601.7959594726562 2 601.795663 1201.57677 0.56495 0.00033998 -0.067467 -4.0601E-05 0.49748 0.00029938 601.7955940801658 62.241 1.2039 65.703 65.282 66.486 3.4625 294 90 4 0 0 0 0.0063213 6 13924 13849;13888;13924;13964;14004;14041 89.401 0 1 3197300 39885 5362 25204 25215 45541;45542;45543;45544;45545;45546 45543 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS UPN48_class_I_Rep_2 6 601.7960205078125 2 601.795663 1201.57677 0.5388 0.00032425 0.042482 2.5566E-05 0.58128 0.00034981 601.795642340791 62.21 1.0591 65.684 65.247 66.306 3.4738 262 80 4 0 0 0 0.0053074 7 13881 13765;13804;13845;13881;13923;13966;13996 79.596 0 1 2310400 39886 5362 25204 25215 45547;45548;45549;45550;45551;45552;45553 45550 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MSMS UPN48_class_I_Rep_2 6 601.7955932617188 2 601.795663 1201.57677 NaN NaN NaN NaN NaN NaN NaN 64.792 1 68.271 67.771 68.771 3.4792 0 0 0 0.28608 1 14677 14677 11.495 0 1 39887 5362 25204 25215 45554 45554 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 nc|ENSG00000197323|Q9UPN9-2|TRIM33 MULTI-MSMS UPN48_class_I_Rep_3 7 601.796142578125 2 601.795663 1201.57677 0.54779 0.00032966 -0.022641 -1.3625E-05 0.52515 0.00031603 601.7956195666228 62.006 1.1702 65.516 65.031 66.202 3.5104 247 97 5 0 0 0 0.019142 7 13720 13636;13642;13680;13720;13759;13794;13832 63.961 0 1 2074700 39888 5362 25204 25215 45555;45556;45557;45558;45559;45560;45561 45558 -0.01595175873626431 RYQHETWL 8 Unmodified _RYQHETWL_ 0 0 0 REV__nc|ENSG00000124664|O95238-2|SPDEF REV__nc|ENSG00000124664|O95238-2|SPDEF MSMS UPN48_class_I_Rep_3 7 566.70947265625 2 566.780348 1131.54614 NaN NaN NaN NaN NaN NaN NaN 114.63 1 118.28 117.78 118.78 3.6511 0 0 0 0.40746 1 27262 27262 0.69038 0 1 + 39889 18815 25205 25216 45562 45562 -0.014369094680205308 RYQIYLLICS 10 Unmodified _RYQIYLLICS_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|102|2|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|102|2|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|102|2|anti-sense MSMS UPN47_class_I_Rep_1 2 636.359375 2 636.344466 1270.67438 NaN NaN NaN NaN NaN NaN NaN 66.162 1 69.52 69.02 70.02 3.3576 0 0 0 0.53105 1 15831 15831 1.4819 0 1 39890 11428 25206 25217 45563 45563 0.04986889730867006 RYQIYLLICS 10 Unmodified _RYQIYLLICS_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|102|2|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|102|2|anti-sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|102|2|anti-sense MSMS UPN47_class_I_Rep_2 3 636.3594360351562 2 636.344466 1270.67438 NaN NaN NaN NaN NaN NaN NaN 66.217 1 69.476 68.976 69.976 3.2588 0 0 0 0.53105 1 15894 15894 1.4819 0.28856 1 39891 11428 25206 25217 45564 45564 0.04986889730867006 RYQKNDLF 8 Unmodified _RYQKNDLF_ 0 0 0 REV__ENSG00000185269|ENST00000409678|NOTUM REV__ENSG00000185269|ENST00000409678|NOTUM MULTI-MSMS UPN48_class_I_Rep_3 7 542.2822875976562 2 542.282723 1082.55089 0.43739 0.00023719 0.13491 7.3159E-05 0.5723 0.00031035 542.282667908222 44.554 0.86488 48.192 47.826 48.691 3.6372 113 57 3 0 0 0 0.82752 1 8510 8510 11.64 1.5664 1 190640 + 39892 20850 25207 25218 45565 45565 0.012919746747456884 RYQLIRLKLLP 11 Unmodified _RYQLIRLKLLP_ 0 0 0 REV__L1MC2_dup1514|chr4:89802895-89803580:-|1.9994344048921184|0.2304528554769941|3.12|149.0|27|3|sense REV__L1MC2_dup1514|chr4:89802895-89803580:-|1.9994344048921184|0.2304528554769941|3.12|149.0|27|3|sense MSMS UPN48_class_I_Rep_1 5 471.6398010253906 3 471.641523 1411.90274 NaN NaN NaN NaN NaN NaN NaN 33.515 1 37.035 36.535 37.535 3.5201 0 0 0 0.38417 1 5238 5238 0.45452 0.35968 1 + 39893 26635 25208 25219 45566 45566 0.21326430370072558 RYQNLLNEF 9 Unmodified _RYQNLLNEF_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MULTI-MSMS UPN48_class_I_Rep_1 5 598.8069458007812 2 598.806562 1195.59857 0.55412 0.00033181 0.092963 5.5667E-05 0.64708 0.00038748 598.8063766317382 59.186 0.24254 62.667 62.529 62.771 3.4801 17 13 2 0 0 0 0.33908 1 12979 12979 11.495 1.4208 1 68559 39894 5375 25209 25220 45567 45567 0.008596288749458836 RYQNLLNEF 9 Unmodified _RYQNLLNEF_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MSMS UPN48_class_I_Rep_2 6 598.8067016601562 2 598.806562 1195.59857 NaN NaN NaN NaN NaN NaN NaN 59.172 1 62.671 62.171 63.171 3.4987 0 0 0 0.3377 1 12956 12956 8.7454 0.58988 1 39895 5375 25209 25220 45568 45568 0.008596288749458836 RYQNLLNEF 9 Unmodified _RYQNLLNEF_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MSMS UPN48_class_I_Rep_3 7 598.8064575195312 2 598.806562 1195.59857 NaN NaN NaN NaN NaN NaN NaN 58.918 1 62.441 61.941 62.941 3.5231 0 0 0 0.28608 1 12812 12812 11.495 1.4208 1 39896 5375 25209 25220 45569 45569 0.008596288749458836 RYQNLLNEF 9 Unmodified _RYQNLLNEF_ 0 0 0 nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A nc|ENSG00000197535|Q9Y4I1-2|MYO5A MSMS UPN48_class_I_Rep_3 7 598.8070678710938 2 598.806562 1195.59857 NaN NaN NaN NaN NaN NaN NaN 59.049 1 62.572 62.072 63.072 3.5231 0 0 0 0.37692 1 12853 12853 6.2058 1.8765 1 39897 5375 25209 25220 45570 45570 0.008596288749458836 RYQPLFNYQ 9 Unmodified _RYQPLFNYQ_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|26|3|anti-sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|26|3|anti-sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 615.3099975585938 2 614.809105 1227.60366 0.4896 0.00030101 -0.55491 -0.00034117 -0.065316 -4.0157E-05 614.8086463775139 32.254 0.54529 35.903 35.62 36.165 3.6497 80 60 2 0 0 0 0.48846 1 4910 4910 1.8442 0.19162 1 80007 39898 16581 25210 25221 45571 45571 -0.001040672624412764 RYQPLFNYQ 9 Unmodified _RYQPLFNYQ_ 0 0 0 MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|26|3|anti-sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|26|3|anti-sense MSTB1_dup2972|chr10:75514468-75514882:+|1.3760678106500297|0.0057414521869628|7.9|147.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 614.8067016601562 2 614.809105 1227.60366 0.47205 0.00029022 -0.60787 -0.00037372 -0.13581 -8.35E-05 614.808655838919 32.227 0.76107 35.928 35.411 36.172 3.7015 114 82 2 0 0 0 0.46434 1 4870 4870 4.3292 0.38484 1 97241 39899 16581 25210 25221 45572 45572 -0.001040672624412764 RYQQFKDFQR 10 Unmodified _RYQQFKDFQR_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000123136|ENST00000242776|DDX39A;ENST00000587730.5_1_19:14519750-14520297:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MULTI-MSMS UPN46_class_I_Rep_3 1 472.57720947265625 3 472.57747 1414.71058 0.061978 2.929E-05 -0.42338 -0.00020008 -0.3614 -0.00017079 472.57725870866557 33.419 0.98618 33.419 33.04 34.026 0 150 77 3 0 0 0 0.30562 2 5861 5798;5861 31.462 24.838 1 238170 39900 5440 25211 25222 45573;45574 45574 0.01981482951941871 RYQRASHILV 10 Unmodified _RYQRASHILV_ 0 0 0 REV__ENST00000391777.3_1_19:53432579-53456083:-|nuORF REV__ENST00000391777.3_1_19:53432579-53456083:-|nuORF MSMS UPN48_class_I_Rep_1 5 621.8555297851562 2 621.856921 1241.69929 NaN NaN NaN NaN NaN NaN NaN 89.33 1 92.955 92.455 93.455 3.6255 0 0 0 0.53105 1 21448 21448 1.4819 0.28856 1 + 39901 22084 25212 25223 45575 45575 0.08810705648443218 RYQVWGHI 8 Unmodified _RYQVWGHI_ 0 0 0 MLT1A0_dup6759|chr5:34089291-34089671:+|1.3039978444046298|0.0144198041413487|6.5|151.0|7|2|sense MLT1A0_dup6759|chr5:34089291-34089671:+|1.3039978444046298|0.0144198041413487|6.5|151.0|7|2|sense MLT1A0_dup6759|chr5:34089291-34089671:+|1.3039978444046298|0.0144198041413487|6.5|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 529.7791748046875 2 529.780151 1057.54575 NaN NaN NaN NaN NaN NaN NaN 24.898 1 28.534 28.034 29.034 3.6363 0 0 0 0.40738 1 2954 2954 0.79363 0 1 39902 16257 25213 25224 45576 45576 0.019277156028010722 RYRDDRWREER 11 Unmodified _RYRDDRWREER_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS UPN46_class_I_Rep_3 1 546.2730102539062 3 546.273221 1635.79783 0.21033 0.0001149 -0.17452 -9.5336E-05 0.035804 1.9559E-05 546.27306379983 33.767 0.52796 33.767 33.717 34.245 0 45 36 2 0 0 0 0.68583 1 6024 6024 0 0 1 109700 39903 2285 25214 25225 45577 45577 0.00536657155521425 RYREREKPRRK 11 Unmodified _RYREREKPRRK_ 0 0 0 REV__Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|68|1|anti-sense REV__Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|68|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 525.3641357421875 3 525.309718 1572.90732 0.4369 0.00022951 -0.22001 -0.00011557 0.21689 0.00011393 525.3099185604128 97.597 0.029716 101.38 101.36 101.39 3.7861 5 3 2 0 0 0 22.551 1 24181 24181 0 0 1 46144 + 39904 32352 25215 25226 45578 45578 0.1437870756551547 RYREYLIIRKI 11 Unmodified _RYREYLIIRKI_ 0 0 0 L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|13|2|sense L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|13|2|sense L1M5_dup23994|chr7:92633909-92634752:-|4.6517065168092255|0.0124338587055272|8.55|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 508.5487060546875 3 508.312065 1521.91437 NaN NaN NaN NaN NaN NaN NaN 106.25 1 106.25 105.75 106.75 0 0 0 0 0.38417 1 25912 25912 0 0 1 39905 9116 25216 25227 45579 45579 0.17428627393405804 RYRFRKRRERI 11 Unmodified _RYRFRKRRERI_ 0 0 0 REV__MLT1C_dup7482|chr6:156133969-156134445:+|1.7960641752471354|0.007473402313819|7.91|148.0|2|1|sense REV__MLT1C_dup7482|chr6:156133969-156134445:+|1.7960641752471354|0.007473402313819|7.91|148.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 545.6604614257812 3 545.997474 1634.97059 0.4325 0.00023614 -3.5422 -0.001934 -3.1097 -0.0016979 545.9951711811408 99.758 0.09333 103.36 103.31 103.4 3.6065 15 11 2 0 0 0 22.551 1 24086 24086 0 0 1 107790 + 39906 31656 25217 25228 45580 45580 0.17850693073432922 RYRGQEHC 8 Unmodified _RYRGQEHC_ 0 0 0 ENSG00000145824|ENST00000512158|CXCL14;nc|ENSG00000145824|O95715|CXCL14 ENSG00000145824|ENST00000512158|CXCL14 ENSG00000145824|ENST00000512158|CXCL14 MSMS UPN47_class_I_Rep_3 4 524.7424926757812 2 524.740699 1047.46685 NaN NaN NaN NaN NaN NaN NaN 114.33 1 117.83 117.33 118.33 3.4963 0 0 0 0.40604 1 28071 28071 2.5775 0 1 39907 3413 25218 25229 45581 45581 -0.054988796937777806 RYRKGYVFILI 11 Unmodified _RYRKGYVFILI_ 0 0 0 REV__L1MA2_dup640|chr2:63204642-63206291:-|1.313377950834476|0.0247033691059256|5.73|151.0|56|1|anti-sense REV__L1MA2_dup640|chr2:63204642-63206291:-|1.313377950834476|0.0247033691059256|5.73|151.0|56|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.6236267089844 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 105.15 1 108.89 108.39 109.39 3.7395 0 0 0 0.38417 1 25816 25816 0.45452 0 1 + 39908 24918 25219 25230 45582 45582 0.1485416844466272 RYRKSKSKK 9 Unmodified _RYRKSKSKK_ 0 0 0 REV__L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|28|1|sense REV__L1MA3_dup5300|chrX:77577776-77582117:+|3.936072873198957|0.2923849631610343|3.75|151.0|28|1|sense MSMS UPN46_class_I_Rep_3 1 590.8670043945312 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 99.911 1 99.911 99.411 100.41 0 0 0 0 0.40038 1 24351 24351 0.6015 0 1 + 39909 25042 25220 25231 45583 45583 0.13735296028107769 RYRKVRLLVEK 11 Unmodified _RYRKVRLLVEK_ 0 0 0 REV__Tigger1_dup6545|chr8:116860004-116860731:+|1.165972038824537|0.1201545116272564|3.28|150.0|17|3|sense REV__Tigger1_dup6545|chr8:116860004-116860731:+|1.165972038824537|0.1201545116272564|3.28|150.0|17|3|sense MSMS UPN47_class_I_Rep_2 3 487.31158447265625 3 487.312177 1458.9147 NaN NaN NaN NaN NaN NaN NaN 66.386 1 69.645 69.145 70.145 3.2588 0 0 0 0.38417 1 15946 15946 0.094841 0 1 + 39910 32500 25221 25232 45584 45584 0.20360047113263136 RYRLRMVL 8 Unmodified _RYRLRMVL_ 0 0 0 REV__ENST00000559596.5_1_15:41634623-41643204:+|nuORF REV__ENST00000559596.5_1_15:41634623-41643204:+|nuORF MSMS UPN46_class_I_Rep_3 1 553.8352661132812 2 553.834403 1105.65425 NaN NaN NaN NaN NaN NaN NaN 22.662 1 22.662 22.162 23.162 0 0 0 0 0.40746 1 2727 2727 0.69038 0.088878 1 + 39911 23010 25222 25233 45585 45585 0.10565183581570636 RYRLRMVL 8 Unmodified _RYRLRMVL_ 0 0 0 REV__ENST00000559596.5_1_15:41634623-41643204:+|nuORF REV__ENST00000559596.5_1_15:41634623-41643204:+|nuORF MSMS UPN46_class_I_Rep_3 1 553.834716796875 2 553.834403 1105.65425 NaN NaN NaN NaN NaN NaN NaN 22.854 1 22.854 22.354 23.354 0 0 0 0 0.40746 1 2778 2778 0.69038 0 1 + 39912 23010 25222 25233 45586 45586 0.10565183581570636 RYRLRYRR 8 Unmodified _RYRLRYRR_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS UPN47_class_I_Rep_1 2 619.8701782226562 2 619.870697 1237.72684 NaN NaN NaN NaN NaN NaN NaN 88.213 1 91.869 91.369 92.369 3.6563 0 0 0 0.40746 1 22059 22059 0.69038 0.16561 1 + 39913 23183 25223 25234 45587 45587 0.11748653699328315 RYRMAERI 8 Unmodified _RYRMAERI_ 0 0 0 L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|62|2|sense L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|62|2|sense L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|62|2|sense MSMS UPN48_class_I_Rep_2 6 547.7991943359375 2 547.798017 1093.58148 NaN NaN NaN NaN NaN NaN NaN 33.634 1 37.294 36.794 37.794 3.6607 0 0 0 0.40625 1 5332 5332 2.3027 0.65011 1 39914 15145 25224 25235 45588 45588 0.038434297881622115 RYRNRNKN 8 Unmodified _RYRNRNKN_ 0 0 0 REV__ENSG00000196396|ENST00000371621|PTPN1 REV__ENSG00000196396|ENST00000371621|PTPN1 MSMS UPN46_class_I_Rep_3 1 560.7656860351562 2 560.807762 1119.60097 NaN NaN NaN NaN NaN NaN NaN 34.407 1 34.407 33.907 34.907 0 0 0 0 0.4044 1 6139 6139 4.756 0.81161 1 + 39915 21036 25225 25236 45589 45589 0.04595522123281626 RYRNRRKD 8 Unmodified _RYRNRRKD_ 0 0 0 REV__ENSG00000070366.14,SMG6,chr17,-,I26.1,2082311,2085724|44|5.94|3|intron REV__ENSG00000070366.14,SMG6,chr17,-,I26.1,2082311,2085724|44|5.94|3|intron MSMS UPN47_class_I_Rep_2 3 582.3284912109375 2 582.328862 1162.64317 NaN NaN NaN NaN NaN NaN NaN 61.723 1 64.982 64.482 65.482 3.2594 0 0 0 0.40746 1 14530 14530 0.69038 0 1 + 39916 17794 25226 25237 45590 45590 0.06835497531642432 RYRPHFAY 8 Unmodified _RYRPHFAY_ 0 0 0 L1MB3_dup16888|chr21:44387193-44388546:+|1.0647843424834826|0.0115411630927371|6.53|151.0|52|1|anti-sense L1MB3_dup16888|chr21:44387193-44388546:+|1.0647843424834826|0.0115411630927371|6.53|151.0|52|1|anti-sense L1MB3_dup16888|chr21:44387193-44388546:+|1.0647843424834826|0.0115411630927371|6.53|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_2 3 555.2855224609375 2 555.2856 1108.55665 NaN NaN NaN NaN NaN NaN NaN 26.809 1 30.308 29.808 30.808 3.4986 0 0 0 0.40738 1 3932 3932 0.79363 0.10326 1 39917 10374 25227 25238 45591 45591 0.006711179770945819 RYRREHLS 8 Unmodified _RYRREHLS_ 0 0 0 ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 ENSG00000130559|ENST00000389532|CAMSAP1 MULTI-SECPEP UPN47_class_I_Rep_3 4 558.8062744140625 2 558.804688 1115.59482 0.42858 0.00023949 2.057 0.0011495 2.4856 0.001389 558.8058134469642 55.215 0.32227 58.393 58.239 58.561 3.1779 30 22 2 0 0 0 0.72333 1 12646 12646 2.3027 0.65011 1 58249 39918 2661 25228 25239 45592 45592 0.04165003891762353 RYRRSQRR 8 Unmodified _RYRRSQRR_ 0 0 0 REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 589.8453979492188 2 589.342304 1176.67005 0.46205 0.00027231 1.402 0.00082628 1.8641 0.0010986 589.3430117753023 86.907 0.23961 90.544 90.48 90.72 3.6372 44 30 2 0 0 0 0.82752 1 21701 21701 0.69038 0 1 77940 + 39919 21765 25229 25240 45593 45593 0.088786061428209 RYRRSQRR 8 Unmodified _RYRRSQRR_ 0 0 0 REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 589.8453979492188 2 589.342304 1176.67005 0.46205 0.00027231 1.402 0.00082628 1.8641 0.0010986 589.3430117753023 86.907 0.23961 90.544 90.48 90.72 3.6372 44 30 2 0 0 0 0.72333 1 21701 21701 0.69038 0 1 77940 + 39920 21765 25229 25240 45594 45594 0.088786061428209 RYRVHLTR 8 Unmodified _RYRVHLTR_ 0 0 0 L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense;L1PA3_dup6317|chrX:46655358-46661385:+|2.828186986300199|0.2030807710624546|3.8|151.0|3|1|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|112|3|sense;L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|3|1|sense;L1PA3_dup4122|chr6:57334869-57340871:+|1.2884723371868338|0.0519221903419051|4.63|151.0|2|1|sense;L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|3|1|sense;L1PA3_dup10344|chr19:32587513-32593595:-|2.0287370604614363|0.2259564938945099|3.17|151.0|48|2|sense;L1HS_dup337|chr3:136479057-136485103:-|3.798017878111875|0.0957321270475341|5.31|151.0|3|1|sense;L1PA3_dup6760|chrX:97509511-97515511:-|1.5910565974324509|0.0794534900487284|4.32|151.0|85|2|sense;L1PA3_dup1541|chr2:240544495-240550522:+|4.767911594156396|0.2319558514444691|4.36|151.0|3|1|sense;L1HS_dup444|chr4:87347104-87353146:-|1.1020282740422256|0.0353824237081255|4.96|151.0|141|3|sense;L1HS_dup1462|chr16:54042097-54048145:+|2.416431049784204|0.4451227716780219|2.44|151.0|2|1|sense;L1PA3_dup7470|chr10:31469211-31475223:+|2.8106536720210755|0.1884756112212745|3.9|151.0|2|1|sense;L1PA3_dup7853|chr11:10173148-10179353:+|1.6721599694215965|0.1198265052135718|3.8|151.0|93|3|sense;L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|127|3|sense;L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|2|1|sense;L1HS_dup553|chr5:34147846-34154031:+|1.0296686266490696|0.0435786701224414|4.56|151.0|2|1|sense;L1PA2_dup1752|chr5:139005424-139011486:-|7.339643362096039|0.1572086853237545|5.54|151.0|2|1|sense;L1HS_dup788|chr7:70197329-70203357:+|1.86074791699239|0.0201084658024881|6.53|151.0|3|1|sense;L1PA3_dup2820|chr4:106213355-106219380:+|1.0498892170021834|0.1664069450626405|2.66|151.0|3|1|sense;L1PA2_dup187|chr1:158952741-158958797:+|2.9481994155969926|0.0787318393075506|5.23|151.0|3|1|sense;L1PA2_dup551|chr2:143661563-143667611:+|6.154483636234586|0.1044371447650175|5.88|151.0|62|2|sense;L1HS_dup376|chr4:15841547-15847572:+|1.8202285231742168|0.0469956216193236|5.28|151.0|3|1|sense;L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|77|2|sense;L1PA3_dup734|chr1:245816540-245822560:+|1.0854362849122274|0.0909620461680101|3.58|151.0|64|2|sense;L1PA7_dup7577|chr9:113437561-113443590:-|6.305747050052443|0.0968200997633026|6.03|151.0|143|3|sense;L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|3|1|sense;L1PA2_dup548|chr2:143006043-143012076:+|2.5570917662161987|0.0856997596676011|4.9|151.0|3|1|sense;L1PA2_dup4714|chr18:57719249-57725264:+|6.1797253076448495|0.3632377367277949|4.09|151.0|88|2|sense;L1PA2_dup4620|chr17:61110230-61116238:+|3.9396358515013454|0.1650750810842491|4.58|151.0|3|1|sense;L1PA2_dup4413|chr15:64326661-64332685:+|1.68497011038086|0.1104953587875596|3.93|150.0|3|1|sense;L1PA2_dup3799|chr11:102369167-102375192:-|1.1149595156277532|0.4609807505989771|1.27|151.0|101|3|sense;L1PA2_dup3615|chr11:14715909-14721938:+|4.359156102251853|0.0871561334255217|5.64|151.0|59|2|sense;L1PA2_dup2581|chr8:98614446-98620471:+|1.3316650932505545|0.0997431892731582|3.74|151.0|3|1|sense;L1PA2_dup2431|chr8:26395613-26401579:+|3.5368864013450736|0.4269177151087489|3.05|151.0|79|2|sense;L1PA2_dup215|chr1:174377792-174383815:-|1.893230001147713|0.1765379000415642|3.42|151.0|151|3|sense;L1PA2_dup1805|chr5:170239777-170245795:-|3.361788922029873|0.451336868346228|2.9|151.0|123|3|sense;L1PA3_dup7482|chr10:35473783-35479771:+|1.887197265545522|0.0813847102593323|4.54|151.0|3|1|sense;L1HS_dup191|chr2:148188746-148194773:+|2.1724550004371306|0.0498513486414125|5.45|151.0|34|2|sense;L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|2|1|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|2|1|sense;L1PA4_dup185|chr1:66780143-66786326:+|1.7921329284730811|0.1869490156243565|3.26|150.0|2|1|sense;L1PA3_dup6116|chr9:125010049-125016177:+|2.21534687376662|0.0886593728627493|4.64|151.0|82|2|sense;L1PA2_dup977|chr3:151241773-151247772:+|1.7932022209374487|0.0759237769582012|4.56|151.0|71|2|sense;L1PA4_dup7064|chrX:56047266-56053280:-|1.42567306916641|0.0398766048423352|5.16|150.0|41|2|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.0737340178107877|0.2448110861201761|2.13|150.0|3|1|sense;L1PA2_dup4189|chr13:95733700-95740837:-|4.433547310000071|0.1352278297417478|5.03|151.0|143|3|sense;L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|3|1|sense;L1PA2_dup3007|chrX:65614681-65620735:-|1.7319222270933985|0.0399095824082452|5.44|150.0|3|1|sense;L1PA2_dup2164|chr7:32682679-32688715:-|1.256117456056184|0.3788891291014142|1.73|148.0|2|1|sense;L1PA3_dup1937|chr3:97904738-97910773:-|1.9306026000164596|0.4417639031982622|2.13|151.0|156|3|sense;L1PA2_dup16|chr1:25506586-25512707:+|1.3364039214258825|0.0952321746847839|3.81|151.0|3|1|sense;L1HS_dup800|chr7:91173444-91179517:+|1.0428347067153572|0.069461906138694|3.91|151.0|103|3|sense;L1PA5_dup6362|chr9:92568070-92574214:-|4.038909464602933|0.0405720258266784|6.64|151.0|130|3|sense;L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|3|1|sense;L1PA2_dup221|chr1:176002355-176008367:-|3.1869902394537344|0.0843944549291659|5.24|151.0|2|1|sense;L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|2|1|sense;L1PA3_dup7550|chr10:52730356-52736527:-|4.599029805024438|0.0284663052624559|7.34|150.0|49|2|sense;L1P1_dup3049|chr19:24115698-24117843:-|3.157747440470269|0.1906697331782938|4.05|151.0|40|3|sense;L1PA2_dup219|chr1:174843227-174849243:-|3.385422371269314|0.4502185352130829|2.91|151.0|61|2|sense;L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|3|1|sense;L1PA3_dup2195|chr3:158511109-158517123:-|1.6484560956672103|0.0675537095312633|4.61|151.0|3|1|sense;L1PA3_dup3800|chr5:137968596-137974622:+|11.612029046039156|0.2643911469566788|5.46|151.0|3|1|sense;L1PA3_dup5523|chr8:102316941-102323098:+|1.5502680642748126|0.1332636577171125|3.54|151.0|3|1|sense;L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|2|1|sense;L1PA3_dup4709|chr7:37163343-37169491:-|11.219360921703444|0.1922281966360752|5.87|151.0|37|2|sense;L1PA3_dup6536|chrX:72440594-72446687:+|3.657870856154072|0.0644905602100551|5.83|150.0|2|1|sense;L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|77|2|sense;L1PA3_dup512|chr1:169275509-169279839:-|1.048869413170849|0.1198277288768944|3.13|151.0|82|3|sense;L1PA4_dup11389|chr19:37116470-37122625:+|2.1752822310696014|0.2414923716718151|3.17|151.0|52|2|sense;L1PA3_dup8408|chr12:26669558-26675709:+|1.8567229224142128|0.1009279372125444|4.2|151.0|3|1|sense;L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|64|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|2|1|sense;L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|2|1|sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|3|1|sense;L1P1_dup1882|chrX:57148050-57152918:-|1.9404355929622887|0.046891269545799|5.37|151.0|3|1|sense;L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|56|2|sense;L1PA3_dup5686|chr9:139649-145712:+|2.487737939695242|0.4201646721703037|2.57|150.0|2|1|sense L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense L1PA3_dup7821|chr11:19135061-19141079:+|3.02564726419931|0.3608570356775387|3.07|151.0|77|2|sense MSMS UPN47_class_I_Rep_3 4 550.8252563476562 2 550.825424 1099.63629 NaN NaN NaN NaN NaN NaN NaN 30.485 1 33.796 33.296 34.296 3.3116 0 0 0 0.40746 1 5067 5067 0.69038 0 1 39921 14284 25230 25241 45595 45595 0.09046184651060685 RYRVLRIPVH 10 Unmodified _RYRVLRIPVH_ 0 0 0 REV__LTR12C_dup850|chr5:10374977-10376523:+|2.5035124376535647|0.1876560272518037|3.74|151.0|41|1|anti-sense REV__LTR12C_dup850|chr5:10374977-10376523:+|2.5035124376535647|0.1876560272518037|3.74|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_3 7 436.93951416015625 3 436.938562 1307.79386 NaN NaN NaN NaN NaN NaN NaN 46.132 1 49.769 49.269 50.269 3.6369 0 0 0 0.53105 1 8911 8911 1.9064 0.1641 1 + 39922 30802 25231 25242 45596 45596 0.15227264190434653 RYRWAIFV 8 Unmodified _RYRWAIFV_ 0 0 0 L1MA5_dup3905|chr16:47288901-47292008:-|7.13424476042248|0.0727360382120371|6.62|151.0|137|1|anti-sense L1MA5_dup3905|chr16:47288901-47292008:-|7.13424476042248|0.0727360382120371|6.62|151.0|137|1|anti-sense L1MA5_dup3905|chr16:47288901-47292008:-|7.13424476042248|0.0727360382120371|6.62|151.0|137|1|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2898559570312 2 555.813993 1109.61343 NaN NaN NaN NaN NaN NaN NaN 64.448 1 67.622 67.122 68.122 3.1741 0 0 0 0.40604 1 15414 15414 2.5775 0 1 39923 9912 25232 25243 45597 45597 0.06301165533591302 RYRWMNEL 8 Unmodified _RYRWMNEL_ 0 0 0 REV__L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|60|1|sense REV__L1PA3_dup4401|chr6:100580587-100586736:-|1.7643952968867098|0.0755111068479438|4.55|151.0|60|1|sense MSMS UPN48_class_I_Rep_2 6 584.2880859375 2 584.290025 1166.5655 NaN NaN NaN NaN NaN NaN NaN 59.928 1 63.415 62.915 63.915 3.4868 0 0 0 0.40472 1 13189 13189 4.3292 0.38484 1 + 39924 29539 25233 25244 45598 45598 -0.011122764487481618 RYRYYLPQ 8 Unmodified _RYRYYLPQ_ 0 0 0 L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|28|2|sense L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|28|2|sense L1MCc_dup2874|chr15:40547003-40548258:-|3.023595101248329|0.4850960726455967|2.64|151.0|28|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.8052368164062 2 579.806365 1157.59818 0.42641 0.00024724 -0.063855 -3.7024E-05 0.36256 0.00021021 579.8062955945655 40.177 1.5158 43.918 43.43 44.946 3.7413 387 154 3 0 0 0 0.82752 1 7495 7495 2.3027 2.3027 1 1148200 39925 11866 25234 25245 45599 45599 0.025682539457420717 RYSDSTFTF 9 Unmodified _RYSDSTFTF_ 0 0 0 ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8 ENST00000503561.7_1_5:49963882-50057668:+|nuORF ENST00000503561.7_1_5:49963882-50057668:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 562.256591796875 2 562.256371 1122.49819 0.44562 0.00025055 -0.13873 -7.8002E-05 0.30689 0.00017255 562.256235846283 50.23 1.1309 53.755 53.347 54.478 3.5246 179 72 4 0 0 0 0.038999 1 10213 10213 53.404 3.471 1 851630 39926 3606 25235 25246 45600 45600 -0.058160281787195345 RYSDSTFTF 9 Unmodified _RYSDSTFTF_ 0 0 0 ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8 ENST00000503561.7_1_5:49963882-50057668:+|nuORF ENST00000503561.7_1_5:49963882-50057668:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 562.2564086914062 2 562.256371 1122.49819 0.32062 0.00018027 0.0036305 2.0413E-06 0.32425 0.00018231 562.2563095045498 50.105 0.96913 53.726 53.375 54.345 3.621 147 60 3 0 0 0 0.022868 1 10137 10137 61.602 2.9231 1 765940 39927 3606 25235 25246 45601 45601 -0.058160281787195345 RYSEYAEEF 9 Unmodified _RYSEYAEEF_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_1 5 597.2591552734375 2 597.259111 1192.50367 0.42495 0.0002538 0.034874 2.0829E-05 0.45982 0.00027463 597.2590488792518 43.353 0.62144 46.864 46.582 47.204 3.5103 116 52 3 0 0 0 0.073198 5 8132 8050;8092;8132;8181;8223 40.239 16.219 1 328150 39928 3142 25236 25247 45602;45603;45604;45605;45606 45604 -0.0848834938692562 RYSEYAEEF 9 Unmodified _RYSEYAEEF_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_2 6 597.2590942382812 2 597.259111 1192.50367 0.41468 0.00024767 0.074424 4.445E-05 0.4891 0.00029212 597.2590225747128 42.988 0.84333 46.75 46.451 47.295 3.7617 138 68 3 0 0 0 0.073198 5 8047 7962;8006;8047;8085;8123 40.239 16.219 1 335660 39929 3142 25236 25247 45607;45608;45609;45610;45611 45609 -0.0848834938692562 RYSEYAEEF 9 Unmodified _RYSEYAEEF_ 0 0 0 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 ENSG00000139505|ENST00000381801|MTMR6 MULTI-MSMS UPN48_class_I_Rep_3 7 597.259765625 2 597.259111 1192.50367 0.44593 0.00026633 0.0044089 2.6333E-06 0.45034 0.00026897 597.259091414708 43.163 0.70088 46.801 46.51 47.21 3.6385 110 59 3 0 0 0 0.073198 4 8020 7939;7978;8020;8063 40.239 16.219 1 341400 39930 3142 25236 25247 45612;45613;45614;45615 45614 -0.0848834938692562 RYSFNVKNF 9 Unmodified _RYSFNVKNF_ 0 0 0 Charlie23a_dup569|chr6:7134480-7134757:-|1.466495053183866|0.0100492849191289|7.19|151.0|12|1|anti-sense Charlie23a_dup569|chr6:7134480-7134757:-|1.466495053183866|0.0100492849191289|7.19|151.0|12|1|anti-sense Charlie23a_dup569|chr6:7134480-7134757:-|1.466495053183866|0.0100492849191289|7.19|151.0|12|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.8040771484375 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.21527 1 8195 8195 19.257 0 1 966840 39931 502 25237 25248 45616 45616 0.013239500831332407 RYSIAITW 8 Unmodified _RYSIAITW_ 0 0 0 nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-5|FLNB nc|ENSG00000136068|O75369-5|FLNB MSMS UPN48_class_I_Rep_2 6 505.2767333984375 2 505.276909 1008.53927 NaN NaN NaN NaN NaN NaN NaN 63.504 1 66.978 66.478 67.478 3.4738 0 0 0 0.40746 1 14283 14283 0.69038 0 1 39932 2947 25238 25249 45617 45617 0.035337776513983954 RYSKLVCILI 10 Unmodified _RYSKLVCILI_ 0 0 0 REV__LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|78|2|sense REV__LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|78|2|sense MSMS UPN46_class_I_Rep_3 1 604.3661499023438 2 604.365201 1206.71585 NaN NaN NaN NaN NaN NaN NaN 107.04 1 107.04 106.54 107.54 0 0 0 0 0.53105 1 26112 26112 0.45834 0 1 + 39933 30888 25239 25250 45618 45618 0.12076070490206803 RYSSAFTNR 9 Unmodified _RYSSAFTNR_ 0 0 0 ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF ENSG00000102158|ENST00000618282|MAGT1 ENSG00000102158|ENST00000618282|MAGT1 MULTI-SECPEP UPN46_class_I_Rep_3 1 551.2752685546875 2 551.275429 1100.53631 0.058889 3.2464E-05 -0.43039 -0.00023726 -0.3715 -0.0002048 551.2750477777396 26.26 0.87572 26.26 25.796 26.672 0 128 77 2 0 0 0 0.12383 1 3658 3658 3.2813 0.97858 1 115610 39934 1603 25240 25251 45619 45619 -0.009940974733808616 RYSSVHIY 8 Unmodified _RYSSVHIY_ 0 0 0 L1MA9_dup8629|chr9:40966897-40969132:-|3.3957710148253963|0.1328926413969941|4.68|151.0|5|1|sense L1MA9_dup8629|chr9:40966897-40969132:-|3.3957710148253963|0.1328926413969941|4.68|151.0|5|1|sense L1MA9_dup8629|chr9:40966897-40969132:-|3.3957710148253963|0.1328926413969941|4.68|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 512.8161010742188 2 512.764166 1023.51378 NaN NaN NaN NaN NaN NaN NaN 40.569 1 44.241 43.741 44.741 3.6719 0 0 0 0.40738 1 8059 8059 0.79363 0 1 39935 10161 25241 25252 45620 45620 0.0029630312900508216 RYSVFFQSL 9 Unmodified _RYSVFFQSL_ 0 0 0 nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF nc|ENSG00000163636|Q15008-3|PSMD6 nc|ENSG00000163636|Q15008-3|PSMD6 MULTI-MSMS UPN48_class_I_Rep_1 5 573.801025390625 2 573.800749 1145.58694 0.4799 0.00027536 -0.02189 -1.256E-05 0.45801 0.0002628 573.8006605640632 66.646 1.0819 70.098 69.74 70.822 3.4516 186 71 3 0 0 0 0.0052635 4 15287 15287;15366;15406;15444 79.427 37.395 1 1514400 39936 4025 25242 25253 45621;45622;45623;45624 45621 0.019974318516233325 RYSVFFQSL 9 Unmodified _RYSVFFQSL_ 0 0 0 nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF nc|ENSG00000163636|Q15008-3|PSMD6 nc|ENSG00000163636|Q15008-3|PSMD6 MULTI-MSMS UPN48_class_I_Rep_2 6 573.8009643554688 2 573.800749 1145.58694 0.50146 0.00028774 0.0093826 5.3837E-06 0.51084 0.00029312 573.8006670443718 66.671 1.0578 70.158 69.66 70.718 3.4866 214 71 4 0 0 0 0.0052635 4 15255 15215;15255;15297;15384 79.427 31.833 1 1418500 39937 4025 25242 25253 45625;45626;45627;45628 45626 0.019974318516233325 RYSVFFQSL 9 Unmodified _RYSVFFQSL_ 0 0 0 nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF nc|ENSG00000163636|Q15008-3|PSMD6 nc|ENSG00000163636|Q15008-3|PSMD6 MULTI-MSMS UPN48_class_I_Rep_3 7 573.8010864257812 2 573.800749 1145.58694 0.5166 0.00029643 -0.0036827 -2.1132E-06 0.51292 0.00029431 573.8006552367614 66.597 1.1041 70.105 69.503 70.607 3.5077 236 76 4 0 0 0 0.020867 4 15165 15122;15165;15245;15284 62.869 31.6 1 1506300 39938 4025 25242 25253 45629;45630;45631;45632 45630 0.019974318516233325 RYSVFVNEL 9 Unmodified _RYSVFVNEL_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2 nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-SECPEP UPN48_class_I_Rep_2 6 563.7984008789062 2 563.798206 1125.58186 0.58812 0.00033158 0.057903 3.2646E-05 0.64602 0.00036423 563.7982065994022 57.95 0.61002 61.464 61.151 61.761 3.5142 63 40 2 0 0 0 0.11756 1 12626 12626 12.175 1.3752 1 168100 39939 2930 25243 25254 45633 45633 0.024091279889944417 RYSVFVNEL 9 Unmodified _RYSVFVNEL_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2 nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-SECPEP UPN48_class_I_Rep_3 7 564.3592529296875 2 563.798206 1125.58186 0.36591 0.0002063 0.42589 0.00024012 0.7918 0.00044642 563.7983555010369 57.667 0.57927 61.199 61.08 61.659 3.5317 64 39 2 0 0 0 0.11091 1 12537 12537 16.566 2.1605 1 164410 39940 2930 25243 25254 45634 45634 0.024091279889944417 RYSVFVNEL 9 Unmodified _RYSVFVNEL_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2 nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 563.798206 1125.58186 0.54811 0.00030902 0.019536 1.1014E-05 0.56765 0.00032004 563.7981418903291 57.975 0.65085 61.462 61.194 61.844 3.487 0.086937 -0.0002148 NaN 16.566 70 40 2 NaN NaN NaN NaN 0 NaN NaN 0 176060 39941 2930 25243 25254 0.024091279889944417 RYSYTHFIAA 10 Unmodified _RYSYTHFIAA_ 0 0 0 L1MB4_dup3267|chr7:30264179-30264864:-|1.4984292531121148|0.0579371907259804|4.69|151.0|12|2|sense L1MB4_dup3267|chr7:30264179-30264864:-|1.4984292531121148|0.0579371907259804|4.69|151.0|12|2|sense L1MB4_dup3267|chr7:30264179-30264864:-|1.4984292531121148|0.0579371907259804|4.69|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 614.808837890625 2 614.809105 1227.60366 NaN NaN NaN NaN NaN NaN NaN 32.988 1 36.637 36.137 37.137 3.6497 0 0 0 0.53105 1 5159 5159 1.6526 1.0511 1 39942 10499 25244 25255 45635 45635 -0.001040672624412764 RYTCKTTK 8 Unmodified _RYTCKTTK_ 0 0 0 L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|31|3|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|31|3|sense L1MC4a_dup1609|chr3:17620280-17621510:+|1.463389533687761|0.0111380890694518|7.04|151.0|31|3|sense MSMS UPN46_class_I_Rep_3 1 500.7654724121094 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 115.46 1 115.46 114.96 115.96 0 0 0 0 0.40738 1 28555 28555 0.79363 0 1 39943 11554 25245 25256 45636 45636 0.01737229911339 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS UPN48_class_I_Rep_1 5 543.782470703125 2 543.782556 1085.55056 0.41329 0.00022474 -0.11917 -6.4802E-05 0.29412 0.00015994 543.7824688059175 45.457 0.57476 48.973 48.726 49.301 3.5162 66 40 2 0 0 0 0.048662 5 8777 8708;8735;8777;8822;8836 49.554 15.153 1 244520 39944 939 25246 25257 45637;45638;45639;45640;45641 45639 0.011205549548776617 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS UPN48_class_I_Rep_2 6 543.782470703125 2 543.782556 1085.55056 0.39926 0.00021711 -0.18973 -0.00010317 0.20953 0.00011394 543.7824237143091 45.104 0.65579 48.865 48.628 49.284 3.7617 82 49 2 0 0 0 0.11355 7 8697 8647;8654;8691;8697;8744;8757;8765 31.268 14.155 1 268520 39945 939 25246 25257 45642;45643;45644;45645;45646;45647;45648 45645 0.011205549548776617 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS UPN48_class_I_Rep_3 7 543.7815551757812 2 543.782556 1085.55056 0.42063 0.00022873 -0.19833 -0.00010785 0.2223 0.00012088 543.7823470719231 45.415 0.65639 49.052 48.705 49.361 3.6369 82 47 2 0 0 0 0.15547 4 8675 8617;8675;8715;8733 24.991 7.8781 1 265900 39946 939 25246 25257 45649;45650;45651;45652 45650 0.011205549548776617 RYTQEIFSF 9 Unmodified _RYTQEIFSF_ 0 0 0 nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 MULTI-MSMS UPN48_class_I_Rep_1 5 595.7960205078125 2 595.795663 1189.57677 0.56109 0.00033429 0.061617 3.6711E-05 0.6227 0.000371 595.7956374746234 62.241 0.92919 65.703 65.402 66.331 3.4625 163 71 3 0 0 0 0.095207 7 13900 13857;13900;13938;13980;14023;14032;14071 34.932 14.518 1 768040 39947 690 25247 25258 45653;45654;45655;45656;45657;45658;45659 45654 -0.010431758736331176 RYTQEIFSF 9 Unmodified _RYTQEIFSF_ 0 0 0 nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 MULTI-MSMS UPN48_class_I_Rep_2 6 595.7958984375 2 595.795663 1189.57677 0.5366 0.0003197 -0.047501 -2.8301E-05 0.4891 0.0002914 595.7955707334876 62.221 0.86492 65.695 65.329 66.194 3.4738 158 65 3 0 0 0 0.066364 5 13916 13796;13837;13876;13916;13960 41.956 14.518 1 640430 39948 690 25247 25258 45660;45661;45662;45663;45664 45663 -0.010431758736331176 RYTQEIFSF 9 Unmodified _RYTQEIFSF_ 0 0 0 nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 MSMS UPN48_class_I_Rep_2 6 595.7948608398438 2 595.795663 1189.57677 NaN NaN NaN NaN NaN NaN NaN 62.661 1 66.135 65.635 66.635 3.4738 0 0 0 0.29913 1 14023 14023 10.8 0 1 39949 690 25247 25258 45665 45665 -0.010431758736331176 RYTQEIFSF 9 Unmodified _RYTQEIFSF_ 0 0 0 nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000004939|P02730-2|SLC4A1 MULTI-MSMS UPN48_class_I_Rep_3 7 595.7957763671875 2 595.795663 1189.57677 0.53338 0.00031779 -0.071053 -4.2333E-05 0.46233 0.00027545 595.795611275059 62.035 0.99285 65.545 65.174 66.167 3.5104 164 83 3 0 0 0 0.073198 6 13791 13678;13715;13755;13791;13833;13871 40.239 19.825 1 607770 39950 690 25247 25258 45666;45667;45668;45669;45670;45671 45669 -0.010431758736331176 RYTSLYIA 8 Unmodified _RYTSLYIA_ 0 0 0 REV__L1ME3Cz_dup8901|chr12:104696694-104697139:-|2.893835384326469|0.0063072028990103|8.84|151.0|6|2|sense REV__L1ME3Cz_dup8901|chr12:104696694-104697139:-|2.893835384326469|0.0063072028990103|8.84|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.7687683105469 2 493.768917 985.523281 0.34705 0.00017136 -0.44328 -0.00021888 -0.09623 -4.7515E-05 493.76859268988915 54.123 0.70198 57.441 57.108 57.81 3.3187 68 39 2 0 0 0 0.82752 1 12316 12316 1.8442 0 1 179500 + 39951 28132 25248 25259 45672 45672 0.029940714144913727 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;chr12:6951520-6951983|150|12.78|0.72|4.14|+|ENST00000542462|PTPN6,PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS UPN48_class_I_Rep_1 5 571.7951049804688 2 571.795663 1141.57677 0.44858 0.00025649 -1.1487 -0.00065683 -0.70013 -0.00040033 571.7948212801654 54.847 0.51169 58.356 58.047 58.558 3.5082 81 35 3 0 0 0 0.21626 3 11636 11636;11657;11686 42.312 16.044 1 295520 39952 1983 25249 25260 45673;45674;45675 45673 0.011648241263856107 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;chr12:6951520-6951983|150|12.78|0.72|4.14|+|ENST00000542462|PTPN6,PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS UPN48_class_I_Rep_2 6 571.796142578125 2 571.795663 1141.57677 0.59409 0.0003397 -1.4114 -0.00080702 -0.81729 -0.00046733 571.794701701423 54.696 0.6837 58.278 58.067 58.75 3.5817 74 41 2 0 0 0 0.26679 3 11635 11591;11635;11644 37.075 8.5801 1 268280 39953 1983 25249 25260 45676;45677;45678 45677 0.011648241263856107 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;chr12:6951520-6951983|150|12.78|0.72|4.14|+|ENST00000542462|PTPN6,PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS UPN48_class_I_Rep_3 7 571.7959594726562 2 571.795663 1141.57677 0.33182 0.00018974 -1.3263 -0.00075836 -0.99445 -0.00056862 571.7946661357224 54.85 0.70679 58.42 58.001 58.708 3.5694 92 47 3 0 0 0 0.21626 2 11514 11514;11526 42.312 16.044 1 322910 39954 1983 25249 25260 45679;45680 45679 0.011648241263856107 RYTWTKLPL 9 Unmodified _RYTWTKLPL_ 0 0 0 nc|ENSG00000215417|Q75NE6|MIR17HG nc|ENSG00000215417|Q75NE6|MIR17HG nc|ENSG00000215417|Q75NE6|MIR17HG MULTI-MSMS UPN48_class_I_Rep_1 5 589.3428955078125 2 589.340041 1176.66553 0.43104 0.00025403 4.3282 0.0025508 4.7593 0.0028048 589.3426935327956 82.184 0.040855 85.759 85.745 85.785 3.5753 6 4 2 0 0 0 0.48846 1 19621 19621 1.8442 0 1 49074 39955 16824 25250 25261 45681 45681 0.0842628415668969 RYTWTKLPL 9 Unmodified _RYTWTKLPL_ 0 0 0 nc|ENSG00000215417|Q75NE6|MIR17HG nc|ENSG00000215417|Q75NE6|MIR17HG nc|ENSG00000215417|Q75NE6|MIR17HG MSMS UPN48_class_I_Rep_2 6 589.34130859375 2 589.340041 1176.66553 NaN NaN NaN NaN NaN NaN NaN 82.18 1 85.849 85.349 86.349 3.669 0 0 0 0.39518 1 19518 19518 1.8442 0 1 39956 16824 25250 25261 45682 45682 0.0842628415668969 RYTWTKLPL 9 Unmodified _RYTWTKLPL_ 0 0 0 nc|ENSG00000215417|Q75NE6|MIR17HG nc|ENSG00000215417|Q75NE6|MIR17HG nc|ENSG00000215417|Q75NE6|MIR17HG MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 589.340041 1176.66553 0.43104 0.00025403 4.3282 0.0025508 4.7593 0.0028048 589.3426935327956 82.184 0.040855 85.759 85.745 85.785 3.5753 -0.11759 -0.00036627 NaN 1.8442 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 49074 39957 16824 25250 25261 0.0842628415668969 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-2|VPS41 MULTI-MSMS UPN48_class_I_Rep_1 5 570.8054809570312 2 570.806031 1139.59751 0.48057 0.00027431 0.019703 1.1247E-05 0.50027 0.00028556 570.8059590220873 56.463 0.74802 59.965 59.497 60.245 3.5014 127 62 3 0 0 0 0.061655 5 12125 12051;12086;12125;12165;12206 43.982 13.096 1 490470 39958 724 25251 25262 45683;45684;45685;45686;45687 45685 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-2|VPS41 MSMS UPN48_class_I_Rep_2 6 570.8062744140625 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 56.187 1 59.721 59.221 60.221 3.5333 0 0 0 0.10979 1 12044 12044 22.658 1.1211 1 39959 724 25251 25262 45688 45688 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-2|VPS41 MSMS UPN48_class_I_Rep_2 6 570.8059692382812 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 56.323 1 59.857 59.357 60.357 3.5333 0 0 0 0.093407 1 12086 12086 26.021 4.4837 1 39960 724 25251 25262 45689 45689 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-2|VPS41 MULTI-MSMS UPN48_class_I_Rep_3 7 570.8055419921875 2 570.806031 1139.59751 0.36205 0.00020666 0.016487 9.4106E-06 0.37853 0.00021607 570.805979161262 56.214 0.80657 59.757 59.343 60.15 3.5427 124 69 2 0 0 0 0.056914 6 12013 11932;11971;12013;12042;12068;12079 46.022 11.621 1 215440 39961 724 25251 25262 45690;45691;45692;45693;45694;45695 45692 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41 nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-2|VPS41 MSMS UPN48_class_I_Rep_3 7 570.8057861328125 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 56.613 1 60.156 59.656 60.656 3.5427 0 0 0 0.18341 1 12109 12109 17.443 1.2935 1 39962 724 25251 25262 45696 45696 0.0332941450603812 RYVFFVHF 8 Unmodified _RYVFFVHF_ 0 0 0 L1ME3A_dup10206|chr11:9232091-9233079:+|1.856273706116625|0.0066430856181061|8.13|151.0|57|2|anti-sense L1ME3A_dup10206|chr11:9232091-9233079:+|1.856273706116625|0.0066430856181061|8.13|151.0|57|2|anti-sense L1ME3A_dup10206|chr11:9232091-9233079:+|1.856273706116625|0.0066430856181061|8.13|151.0|57|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.7938842773438 2 557.795269 1113.57599 NaN NaN NaN NaN NaN NaN NaN 22.126 1 22.126 21.626 22.626 0 0 0 0 0.40738 1 2581 2581 0.79363 0.10326 1 39963 12616 25252 25263 45697 45697 0.023740742680047333 RYVFVLVFY 9 Unmodified _RYVFVLVFY_ 0 0 0 REV__L1ME1_dup10425|chr5:131351554-131352495:+|1.4376827872462996|0.0164364022181351|6.45|151.0|42|1|anti-sense REV__L1ME1_dup10425|chr5:131351554-131352495:+|1.4376827872462996|0.0164364022181351|6.45|151.0|42|1|anti-sense MSMS UPN46_class_I_Rep_3 1 603.3402709960938 2 603.33951 1204.66447 NaN NaN NaN NaN NaN NaN NaN 99.551 1 99.551 99.051 100.05 0 0 0 0 0.40038 1 24255 24255 0.6015 0 1 + 39964 27559 25253 25264 45698 45698 0.07032069787828732 RYVGKKPYI 9 Unmodified _RYVGKKPYI_ 0 0 0 REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|29|1|sense REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|29|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3352661132812 2 562.334759 1122.65496 0.50411 0.00028348 0.24776 0.00013933 0.75187 0.0004228 562.3343932343262 109.44 0.66056 112.97 112.93 113.59 3.5347 201 94 3 0 0 0 0.41259 1 26895 26895 7.2892 0.56607 1 1926600 + 39965 24483 25254 25265 45699 45699 0.09854301502264207 RYVGKWISHKE 11 Unmodified _RYVGKWISHKE_ 0 0 0 REV__L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|223|1|anti-sense REV__L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|223|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 468.61322021484375 3 468.257849 1401.75172 0.19556 9.1573E-05 -0.64104 -0.00030017 -0.44548 -0.0002086 468.2571014504435 72.826 0.04818 72.826 72.787 72.836 0 6 4 2 0 0 0 22.551 1 16843 16843 0.50596 0 1 97866 + 39966 30170 25255 25266 45700 45700 0.06691243991394913 RYVGTRLVR 9 Unmodified _RYVGTRLVR_ 0 0 0 REV__ENST00000569939.5_2_16:10481277-10522815:+|nuORF REV__ENST00000569939.5_2_16:10481277-10522815:+|nuORF MSMS UPN47_class_I_Rep_3 4 560.3409423828125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 97.911 1 101.33 100.83 101.83 3.4216 0 0 0 0.39428 1 24257 24257 2.0598 1.2661 1 + 39967 23084 25256 25267 45701 45701 0.11267337965318802 RYVKKRELKE 10 Unmodified _RYVKKRELKE_ 0 0 0 REV__ENSG00000181381|ENST00000682922|DDX60L REV__ENSG00000181381|ENST00000682922|DDX60L MSMS UPN46_class_I_Rep_3 1 450.27490234375 3 450.273499 1347.79867 NaN NaN NaN NaN NaN NaN NaN 90.275 1 90.275 89.775 90.775 0 0 0 0 0.53105 1 21763 21763 0.69767 0.19171 1 + 39968 20731 25257 25268 45702 45702 0.13868103542540666 RYVNTYTYTQ 10 Unmodified _RYVNTYTYTQ_ 0 0 0 L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 437.2149658203125 3 436.878815 1307.61462 0.15058 6.5787E-05 2.084 0.00091047 2.2346 0.00097626 436.8792015651487 94.245 0.18002 97.996 97.856 98.036 3.7508 35 23 2 0 0 0 0.56354 1 23422 23422 1.3296 0.76647 1 56130 39969 11476 25258 25269 45703 45703 -0.026887096787959308 RYVNTYTYTQ 10 Unmodified _RYVNTYTYTQ_ 0 0 0 L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 436.878815 1307.61462 0.15058 6.5787E-05 2.084 0.00091047 2.2346 0.00097626 436.8792015651487 94.245 0.18002 97.996 97.856 98.036 3.7508 0.10098 -0.00037228 NaN 1.3296 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 56130 39970 11476 25258 25269 -0.026887096787959308 RYVNTYTYTQ 10 Unmodified _RYVNTYTYTQ_ 0 0 0 L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.878815 1307.61462 -0.32418 -0.00014163 3.2807 0.0014333 2.9565 0.0012916 436.8794687062758 94.293 0.12366 97.7 97.646 97.769 3.4068 -0.1952 0.0011961 NaN 1.3296 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 41609 39971 11476 25258 25269 -0.026887096787959308 RYVNTYTYTQ 10 Unmodified _RYVNTYTYTQ_ 0 0 0 L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.878815 1307.61462 0.10867 4.7474E-05 2.3589 0.0010306 2.4676 0.001078 436.87925467420956 94.173 0.12035 97.949 97.877 97.997 3.7761 0.053985 -1.2041E-05 NaN 1.3296 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 60226 39972 11476 25258 25269 -0.026887096787959308 RYVNTYTYTQ 10 Unmodified _RYVNTYTYTQ_ 0 0 0 L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense L1MC4_dup24627|chr22:25635207-25636576:-|1.3157386708888872|0.0085796429555456|7.26|151.0|43|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.878815 1307.61462 0.14446 6.311E-05 2.5899 0.0011315 2.7343 0.0011946 437.21491094793936 94.002 0.22635 97.893 97.774 98 3.8914 -0.0016686 0.00029065 NaN 1.3296 40 31 2 NaN NaN NaN NaN 0 NaN NaN 0 75281 39973 11476 25258 25269 -0.026887096787959308 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN48_class_I_Rep_1 5 579.8065185546875 2 579.806365 1157.59818 0.42825 0.0002483 -0.078194 -4.5337E-05 0.35006 0.00020296 579.8062514111505 40.564 1.3246 44.068 43.628 44.953 3.5048 308 117 3 0 0 0 0.10568 3 7368 7333;7368;7484 32.786 32.786 1 1012200 39974 2019 25259 25270 45704;45705;45706 45705 0.025682539457420717 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN48_class_I_Rep_2 6 579.8065185546875 2 579.806365 1157.59818 0.42641 0.00024724 -0.063855 -3.7024E-05 0.36256 0.00021021 579.8062955945655 40.177 1.5158 43.918 43.43 44.946 3.7413 387 154 3 0 0 0 0.090251 2 7283 7283;7319 36.127 26.268 1 1148200 39975 2019 25259 25270 45707;45708 45707 0.025682539457420717 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-3|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN48_class_I_Rep_3 7 579.8062133789062 2 579.806365 1157.59818 0.39936 0.00023155 -0.069832 -4.0489E-05 0.32953 0.00019106 579.8062786662144 40.252 1.4894 43.902 43.478 44.967 3.6509 373 143 4 0 0 0 0.26468 5 7241 7052;7241;7316;7364;7419 16.149 16.149 1 921200 39976 2019 25259 25270 45709;45710;45711;45712;45713 45710 0.025682539457420717 RYVPRMLI 8 Unmodified _RYVPRMLI_ 0 0 0 L1PA10_dup3648|chr9:34212628-34213223:+|2.601745633102075|0.091192952714364|4.83|151.0|34|3|anti-sense L1PA10_dup3648|chr9:34212628-34213223:+|2.601745633102075|0.091192952714364|4.83|151.0|34|3|anti-sense L1PA10_dup3648|chr9:34212628-34213223:+|2.601745633102075|0.091192952714364|4.83|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_3 7 524.3097534179688 2 524.310229 1046.60591 NaN NaN NaN NaN NaN NaN NaN 52.629 1 56.227 55.727 56.727 3.5979 0 0 0 0.38547 1 10887 10887 13.508 2.684 1 39977 13604 25260 25271 45714 45714 0.08446689941683871 RYVPRMLI 8 Unmodified _RYVPRMLI_ 0 0 0 L1PA10_dup3648|chr9:34212628-34213223:+|2.601745633102075|0.091192952714364|4.83|151.0|34|3|anti-sense L1PA10_dup3648|chr9:34212628-34213223:+|2.601745633102075|0.091192952714364|4.83|151.0|34|3|anti-sense L1PA10_dup3648|chr9:34212628-34213223:+|2.601745633102075|0.091192952714364|4.83|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_3 7 524.3095703125 2 524.310229 1046.60591 NaN NaN NaN NaN NaN NaN NaN 53.54 1 57.124 56.624 57.624 3.5836 0 0 0 0.39819 1 11170 11170 8.5933 2.3875 1 39978 13604 25260 25271 45715 45715 0.08446689941683871 RYVTMANTPTY 11 Unmodified _RYVTMANTPTY_ 0 0 0 REV__MER41A_dup1780|chr12:118308025-118308407:+|1.3843225141129891|0.0025493685637094|9.08|151.0|5|2|sense REV__MER41A_dup1780|chr12:118308025-118308407:+|1.3843225141129891|0.0025493685637094|9.08|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 439.54718017578125 3 439.5483 1315.62307 NaN NaN NaN NaN NaN NaN NaN 91.169 1 94.925 94.425 95.425 3.7554 0 0 0 0.38417 1 21706 21706 6.6235 0 1 + 39979 31302 25261 25272 45716 45716 -0.02211479033849173 RYWMKRGRRSP 11 Unmodified _RYWMKRGRRSP_ 0 0 0 REV__L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|44|3|sense REV__L1MEf_dup10570|chr17:58292080-58293828:+|5.709361657611081|0.0017433965571751|11.68|149.0|44|3|sense MSMS UPN48_class_I_Rep_2 6 498.2739562988281 3 498.273728 1491.79935 NaN NaN NaN NaN NaN NaN NaN 23.916 1 27.556 27.056 28.056 3.6397 0 0 0 0.38417 1 2690 2690 0.094841 0 1 + 39980 28594 25262 25273 45717 45717 0.07312619710614854 RYWPHCLR 8 Unmodified _RYWPHCLR_ 0 0 0 REV__ENST00000354883.10_1_3:66428324-66428423:+|nuORF REV__ENST00000354883.10_1_3:66428324-66428423:+|nuORF MSMS UPN48_class_I_Rep_1 5 565.7874755859375 2 565.787453 1129.56035 NaN NaN NaN NaN NaN NaN NaN 30.696 1 34.238 33.738 34.738 3.542 0 0 0 0.40746 1 4442 4442 0.69038 0 1 + 39981 21861 25263 25274 45718 45718 0.0007546447927779809 RYWSVFFVCFL 11 Unmodified _RYWSVFFVCFL_ 0 0 0 L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|134|1|anti-sense L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|134|1|anti-sense L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|134|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 489.5816345214844 3 489.581164 1465.72166 0.32143 0.00015736 1.2984 0.00063567 1.6198 0.00079303 489.58179456164964 61.323 0.25034 64.801 64.606 64.856 3.4785 25 19 2 0 0 0 0.67356 1 13598 13598 1.1098 0.096179 1 139690 39982 11152 25264 25275 45719 45719 0.007431690018620429 RYWTCIKY 8 Unmodified _RYWTCIKY_ 0 0 0 L1MB5_dup2619|chr6:34343563-34344655:+|1.3615968097704223|0.0622046457792884|4.45|151.0|48|1|anti-sense L1MB5_dup2619|chr6:34343563-34344655:+|1.3615968097704223|0.0622046457792884|4.45|151.0|48|1|anti-sense L1MB5_dup2619|chr6:34343563-34344655:+|1.3615968097704223|0.0622046457792884|4.45|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_1 5 566.7843627929688 2 566.784044 1131.55354 NaN NaN NaN NaN NaN NaN NaN 16.561 1 20.083 19.583 20.583 3.5217 0 0 0 0.40746 1 830 830 0.69038 0 1 39983 10602 25265 25276 45720 45720 -0.006978931919547904 RYWVENSFK 9 Unmodified _RYWVENSFK_ 0 0 0 L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|250|2|anti-sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|250|2|anti-sense L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|250|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 614.8087158203125 2 614.809105 1227.60366 0.4896 0.00030101 -0.55491 -0.00034117 -0.065316 -4.0157E-05 614.8086463775139 32.254 0.54529 35.903 35.62 36.165 3.6497 80 60 2 0 0 0 0.43153 1 4946 4946 6.2058 0.47393 1 80007 39984 14876 25266 25277 45721 45721 -0.0010406726246401377 RYYALFLF 8 Unmodified _RYYALFLF_ 0 0 0 REV__L1MA5A_dup390|chr2:62925487-62927506:+|2.205494121108387|0.0785532914933416|4.81|150.0|127|3|anti-sense REV__L1MA5A_dup390|chr2:62925487-62927506:+|2.205494121108387|0.0785532914933416|4.81|150.0|127|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 546.941162109375 2 546.797478 1091.5804 -0.21809 -0.00011925 2.9427 0.0016091 2.7246 0.0014898 546.799116762001 13.01 0.18106 13.01 12.944 13.125 0 20 16 2 0 0 0 0.72333 1 271 271 2.5775 1.976 1 32912 + 39985 25425 25267 25278 45722 45722 0.03827538690870824 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 588.3014526367188 2 588.301447 1174.58834 0.44789 0.00026349 -0.35751 -0.00021032 0.090382 5.3172E-05 588.3012835329876 37.28 0.37952 40.787 40.573 40.952 3.507 58 40 2 0 0 0 0.39745 2 6365 6293;6365 8.1555 2.4237 1 150890 39986 5520 25268 25279 45723;45724 45724 0.008030659403630125 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 588.3034057617188 2 588.301447 1174.58834 0.41433 0.00024375 -0.19412 -0.0001142 0.22021 0.00012955 588.3012601159041 36.983 0.46871 40.646 40.327 40.796 3.663 76 50 2 0 0 0 0.32682 2 6145 6145;6188 12.241 4.0851 1 111060 39987 5520 25268 25279 45725;45726 45725 0.008030659403630125 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 588.301447 1174.58834 0.44789 0.00026349 -0.35751 -0.00021032 0.090382 5.3172E-05 588.3012835329876 37.28 0.37952 40.787 40.573 40.952 3.507 0.071321 -1.2164E-05 NaN 12.241 58 40 2 NaN NaN NaN NaN 0 NaN NaN 0 150890 39988 5520 25268 25279 0.008030659403630125 RYYKNIGL 8 Unmodified _RYYKNIGL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN47_class_I_Rep_1 2 513.7883911132812 2 513.790184 1025.56581 -0.17542 -9.0127E-05 -0.8892 -0.00045686 -1.0646 -0.00054699 513.7895321575589 34.461 0.76237 38.146 37.758 38.521 3.6859 93 58 2 0 0 0 0.82752 4 6144 6144;6184;6221;6298 18.135 8.349 1 155280 39989 3252 25269 25280 45727;45728;45729;45730 45727 0.05405466542742943 RYYKNIGL 8 Unmodified _RYYKNIGL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MSMS UPN47_class_I_Rep_1 2 513.7896728515625 2 513.790184 1025.56581 NaN NaN NaN NaN NaN NaN NaN 34.785 1 38.471 37.971 38.971 3.6859 0 0 0 0.39819 1 6303 6303 8.5933 1.304 1 39990 3252 25269 25280 45731 45731 0.05405466542742943 RYYKNIGL 8 Unmodified _RYYKNIGL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN47_class_I_Rep_2 3 513.7894287109375 2 513.790184 1025.56581 -0.29262 -0.00015034 -0.6067 -0.00031171 -0.89932 -0.00046206 513.7896727064946 34.826 1.0666 38.251 37.832 38.898 3.4253 132 74 2 0 0 0 0.82752 3 6375 6375;6412;6501 7.9102 7.9102 1 181630 39991 3252 25269 25280 45732;45733;45734 45732 0.05405466542742943 RYYKNIGL 8 Unmodified _RYYKNIGL_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS UPN47_class_I_Rep_3 4 513.789306640625 2 513.790184 1025.56581 -0.2761 -0.00014186 -0.63033 -0.00032386 -0.90643 -0.00046571 513.789792828787 35.044 1.048 38.308 37.973 39.021 3.2639 135 76 2 0 0 0 0.82752 4 6403 6403;6441;6485;6595 18.135 4.6271 1 150220 39992 3252 25269 25280 45735;45736;45737;45738 45735 0.05405466542742943 RYYRSITQ 8 Unmodified _RYYRSITQ_ 0 0 0 REV__ENSG00000162592|ENST00000294600|CCDC27 REV__ENSG00000162592|ENST00000294600|CCDC27 MULTI-MSMS UPN46_class_I_Rep_3 1 543.785888671875 2 543.788173 1085.56179 0.18656 0.00010145 -0.43369 -0.00023584 -0.24713 -0.00013439 543.7879985808595 33.252 0.6972 33.252 32.915 33.612 0 90 56 2 0 0 0 0.82752 1 5819 5819 10.074 0.52995 1 87213 + 39993 19929 25270 25281 45739 45739 0.02243377049035189 RYYVLYIR 8 Unmodified _RYYVLYIR_ 0 0 0 ENSG00000242498|ENST00000357484|ARPIN;nc|ENSG00000242498|Q7Z6K5-2|ARPIN ENSG00000242498|ENST00000357484|ARPIN ENSG00000242498|ENST00000357484|ARPIN MSMS UPN48_class_I_Rep_2 6 573.3246459960938 2 573.326934 1144.63931 NaN NaN NaN NaN NaN NaN NaN 36.973 1 40.675 40.175 41.175 3.7021 0 0 0 0.40746 1 6273 6273 0.69038 0 1 39994 5714 25271 25282 45740 45740 0.07278014985195114 SAAALVSTAI 10 Unmodified _SAAALVSTAI_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|10|1|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|10|1|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 452.26910400390625 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 35.532 1 35.532 35.032 36.032 0 0 0 0 0.53105 1 6480 6480 13.042 0.80181 1 39995 8081 25272 25283 45741 45741 0.052143651776077604 SAAFVIAYI 9 Unmodified _SAAFVIAYI_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MSMS UPN48_class_I_Rep_1 5 477.7681884765625 2 477.768386 953.522219 NaN NaN NaN NaN NaN NaN NaN 48.533 1 52.057 51.557 52.557 3.5239 0 0 0 0.35339 1 9711 9711 7.9102 0 1 39996 5424 25273 25284 45742 45742 0.04359857045608351 SAAFVIAYI 9 Unmodified _SAAFVIAYI_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MULTI-MSMS UPN48_class_I_Rep_3 7 477.767822265625 2 477.768386 953.522219 0.13 6.2108E-05 -0.14114 -6.7433E-05 -0.011147 -5.3258E-06 477.7682548211302 48.442 0.53272 52.076 51.781 52.314 3.6339 43 38 2 0 0 0 0.40174 1 9637 9637 7.9102 0.62092 1 60628 39997 5424 25273 25284 45743 45743 0.04359857045608351 SAAILLMSVLF 11 Unmodified _SAAILLMSVLF_ 0 0 0 REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|212|1|anti-sense REV__L1PA8A_dup2159|chr14:66701366-66707789:+|4.187184378273651|0.2909126365437136|3.85|151.0|212|1|anti-sense MSMS UPN46_class_I_Rep_3 1 582.837646484375 2 582.838485 1163.66242 NaN NaN NaN NaN NaN NaN NaN 46.213 1 46.213 45.713 46.713 0 0 0 0 0.38417 1 9458 9458 2.9952 0.26005 1 + 39998 30269 25274 25285 45744 45744 0.0871327298768847 SAAKLHAL 8 Unmodified _SAAKLHAL_ 0 0 0 ENST00000484394.5_1_X:152720945-152722644:-|nuORF;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7;nc|ENSG00000213397|Q99871-2|HAUS7 ENST00000484394.5_1_X:152720945-152722644:-|nuORF ENST00000484394.5_1_X:152720945-152722644:-|nuORF MSMS UPN48_class_I_Rep_1 5 405.7450866699219 2 405.745245 809.475937 NaN NaN NaN NaN NaN NaN NaN 22.687 1 26.248 25.748 26.748 3.5605 0 0 0 0.40581 1 2248 2248 2.8892 0 1 39999 5589 25275 25286 45745 45745 0.06357836934171246 SAALHLLLLFA 11 Unmodified _SAALHLLLLFA_ 0 0 0 ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1 ENSG00000090863|ENST00000422840|GLG1 ENSG00000090863|ENST00000422840|GLG1 MSMS UPN48_class_I_Rep_1 5 584.8583984375 2 584.858067 1167.70158 NaN NaN NaN NaN NaN NaN NaN 83.405 1 86.992 86.492 87.492 3.5871 0 0 0 0.38417 1 19946 19946 1.1933 0.66858 1 40000 1357 25276 25287 45746 45746 0.12443741333572689 SADEVQRF 8 Unmodified _SADEVQRF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-ERG|1|fusion ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN47_class_I_Rep_1 2 476.2303161621094 2 476.230156 950.445759 -0.33592 -0.00015997 0.17944 8.5452E-05 -0.15648 -7.4521E-05 476.2302290137695 28.268 0.44786 32.034 31.767 32.215 3.7662 56 34 2 0 0 0 0.82752 3 4298 4283;4298;4348 21.537 14.248 1 102780 40001 4400 25277 25288 45747;45748;45749 45748 -0.031445665216665475 SADEVQRF 8 Unmodified _SADEVQRF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-ERG|1|fusion ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN47_class_I_Rep_2 3 476.2300109863281 2 476.230156 950.445759 -0.2666 -0.00012696 0.15403 7.3355E-05 -0.11257 -5.3607E-05 476.2302059297086 28.375 0.58151 31.873 31.643 32.225 3.4986 64 48 2 0 0 0 0.82752 1 4397 4397 18.146 9.5531 1 79646 40002 4400 25277 25288 45750 45750 -0.031445665216665475 SADEVQRF 8 Unmodified _SADEVQRF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-ERG|1|fusion ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN47_class_I_Rep_3 4 476.2310485839844 2 476.230156 950.445759 -0.60782 -0.00028946 0.61256 0.00029172 0.004738 2.2564E-06 476.2304993414445 28.553 0.53729 31.887 31.626 32.163 3.3337 78 47 3 0 0 0 0.82752 1 4534 4534 6.7232 4.4204 1 56178 40003 4400 25277 25288 45751 45751 -0.031445665216665475 SADEVQRFF 9 Unmodified _SADEVQRFF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-ERG|1|fusion ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MSMS UPN47_class_I_Rep_1 2 549.7648315429688 2 549.764363 1097.51417 NaN NaN NaN NaN NaN NaN NaN 52.571 1 56.129 55.629 56.629 3.5585 0 0 0 0.15288 1 11708 11708 19.362 2.2754 1 40004 4400 25278 25289 45752 45752 -0.030683219418278895 SADEVQRFF 9 Unmodified _SADEVQRFF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-ERG|1|fusion ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS UPN47_class_I_Rep_2 3 549.76416015625 2 549.764363 1097.51417 0.50019 0.00027498 -0.17171 -9.4401E-05 0.32847 0.00018058 549.7641332508557 52.676 0.41911 56.009 55.909 56.328 3.3332 47 30 2 0 0 0 0.14216 1 11768 11768 26.268 2.0582 1 94124 40005 4400 25278 25289 45753 45753 -0.030683219418278895 SADKVSKF 8 Unmodified _SADKVSKF_ 0 0 0 ENST00000486166.1_1_X:16870817-16871009:-|nuORF ENST00000486166.1_1_X:16870817-16871009:-|nuORF ENST00000486166.1_1_X:16870817-16871009:-|nuORF MSMS UPN48_class_I_Rep_1 5 441.2474060058594 2 441.239993 880.465432 NaN NaN NaN NaN NaN NaN NaN 108.78 1 112.41 111.91 112.91 3.6321 0 0 0 0.40404 1 26352 26352 5.2307 2.3415 1 40006 7036 25279 25290 45754 45754 0.020418094890942484 SADPDNLKY 9 Unmodified _SADPDNLKY_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS UPN47_class_I_Rep_1 2 511.7438659667969 2 511.743096 1021.47164 -0.19512 -9.9849E-05 0.30757 0.0001574 0.11246 5.755E-05 511.74323164830173 32.057 0.30973 35.77 35.624 35.934 3.7131 33 24 2 0 0 0 0.39745 2 5471 5471;5477 8.1555 4.559 1 54605 40007 3749 25280 25291 45755;45756 45755 -0.03823717070042676 SADPDNLKY 9 Unmodified _SADPDNLKY_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MSMS UPN47_class_I_Rep_2 3 511.7432861328125 2 511.743096 1021.47164 NaN NaN NaN NaN NaN NaN NaN 32.311 1 35.766 35.266 36.266 3.4547 0 0 0 0.38073 1 5581 5581 5.2969 1.7004 1 40008 3749 25280 25291 45757 45757 -0.03823717070042676 SADPDNLKY 9 Unmodified _SADPDNLKY_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS UPN47_class_I_Rep_3 4 511.74365234375 2 511.743096 1021.47164 -0.32385 -0.00016573 0.19214 9.8324E-05 -0.13171 -6.7403E-05 511.74322171529104 32.478 0.37346 35.764 35.463 35.837 3.2867 46 29 2 0 0 0 0.44742 1 5646 5646 5.2969 1.7004 1 48205 40009 3749 25280 25291 45758 45758 -0.03823717070042676 SADPGNLKY 9 Unmodified _SADPGNLKY_ 0 0 0 ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 482.7403869628906 2 482.740357 963.46616 -0.31005 -0.00014967 0.12779 6.169E-05 -0.18226 -8.7983E-05 482.740296811922 31.396 0.45634 35.125 34.88 35.337 3.7293 44 32 2 0 0 0 0.30034 2 5270 5229;5270 13.906 3.8321 1 55618 40010 7243 25281 25292 45759;45760 45760 -0.017033958618526412 SADPGNLKY 9 Unmodified _SADPGNLKY_ 0 0 0 ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.74029541015625 2 482.740357 963.46616 -0.19473 -9.4005E-05 0.013145 6.3457E-06 -0.18159 -8.766E-05 482.74030397647573 31.587 0.46128 35.056 34.821 35.282 3.4691 54 34 2 0 0 0 0.24936 4 5373 5328;5336;5373;5380 17.113 4.0704 1 81543 40011 7243 25281 25292 45761;45762;45763;45764 45763 -0.017033958618526412 SADPGNLKY 9 Unmodified _SADPGNLKY_ 0 0 0 ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 482.73968505859375 2 482.740357 963.46616 -0.48981 -0.00023645 0.37675 0.00018187 -0.11306 -5.4579E-05 482.7403367962164 31.719 0.53492 35.018 34.794 35.329 3.2991 70 41 2 0 0 0 0.14216 2 5468 5428;5468 26.268 8.1218 1 81708 40012 7243 25281 25292 45765;45766 45766 -0.017033958618526412 SADRWRSRY 9 Unmodified _SADRWRSRY_ 0 0 0 ENSG00000141068|ENST00000644974|KSR1 ENSG00000141068|ENST00000644974|KSR1 ENSG00000141068|ENST00000644974|KSR1 MSMS UPN47_class_I_Rep_2 3 598.8187255859375 2 598.799603 1195.58465 NaN NaN NaN NaN NaN NaN NaN 62.029 1 65.288 64.788 65.788 3.2594 0 0 0 0.38478 1 14620 14620 4.3292 0 1 40013 3204 25282 25293 45767 45767 -0.005316038334967743 SADSENLSPDI 11 Unmodified _SADSENLSPDI_ 0 0 0 ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1 ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENST00000564124.5_1_16:48580029-48653834:-|nuORF MSMS UPN47_class_I_Rep_1 2 574.2593994140625 2 574.259308 1146.50406 NaN NaN NaN NaN NaN NaN NaN 70.371 1 73.743 73.243 74.243 3.3713 0 0 0 0.38417 1 17098 17098 1.1933 0.39971 1 40014 1633 25283 25294 45768 45768 -0.06332974457700402 SADYCRYVK 9 Unmodified _SADYCRYVK_ 0 0 0 ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron;nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1 ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron ENSG00000171502.15,COL24A1,chr1,-,I51.1,85784367,85786353|34|8.85|2|intron MSMS UPN48_class_I_Rep_2 6 552.7584228515625 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 76.313 1 79.914 79.414 80.414 3.6011 0 0 0 0.39598 1 18013 18013 1.6526 0.85899 1 40015 4525 25284 25295 45769 45769 -0.04063377813895386 SAESPHLSV 9 Unmodified _SAESPHLSV_ 0 0 0 REV__ENST00000498121.1_1_21:47289198-47321357:+|nuORF REV__ENST00000498121.1_1_21:47289198-47321357:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 464.368896484375 2 463.732532 925.45051 0.19574 9.0772E-05 -0.36561 -0.00016955 -0.16987 -7.8775E-05 463.73224817271756 44.598 0.47947 44.598 44.318 44.798 0 67 49 2 0 0 0 0.11021 1 8993 8993 14.838 0 1 244930 + 40016 22674 25285 25296 45770 45770 -0.015196823789096925 SAFVPLLQF 9 Unmodified _SAFVPLLQF_ 0 0 0 REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|46|2|anti-sense REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.28948974609375 2 511.289485 1020.56442 0.23812 0.00012175 -0.058933 -3.0132E-05 0.17918 9.1614E-05 511.2894209563889 89.011 0.25098 92.634 92.449 92.7 3.6229 50 29 2 0 0 0 0.23293 1 21359 21359 18.146 0 1 156180 + 40017 28612 25286 25297 45771 45771 0.05495832454005267 SAFVPLLQF 9 Unmodified _SAFVPLLQF_ 0 0 0 REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|46|2|anti-sense REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.2895202636719 2 511.289485 1020.56442 0.32179 0.00016453 -0.038204 -1.9533E-05 0.28359 0.00014499 511.2893476244456 89.033 0.86781 92.771 92.35 93.218 3.7379 172 103 3 0 0 0 0.17897 1 21152 21152 22.736 0 1 617390 + 40018 28612 25286 25297 45772 45772 0.05495832454005267 SAFVPLLQF 9 Unmodified _SAFVPLLQF_ 0 0 0 REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|46|2|anti-sense REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.2894287109375 2 511.289485 1020.56442 0.31121 0.00015912 -0.017647 -9.0226E-06 0.29357 0.0001501 511.2893455198161 89.117 0.83302 92.946 92.554 93.387 3.8293 236 106 3 0 0 0 0.11683 2 21131 21131;21163 30.637 0 1 559890 + 40019 28612 25286 25297 45773;45774 45773 0.05495832454005267 SAHAKSEHSKS 11 Unmodified _SAHAKSEHSKS_ 0 0 0 REV__ENST00000413171.6_1_7:872152-892516:+|nuORF REV__ENST00000413171.6_1_7:872152-892516:+|nuORF MSMS UPN48_class_I_Rep_1 5 584.7896118164062 2 584.788901 1167.56325 NaN NaN NaN NaN NaN NaN NaN 15.001 1 18.519 18.019 19.019 3.5184 0 0 0 0.38417 1 517 517 0.96228 0.16864 1 + 40020 22199 25287 25298 45775 45775 -0.013830336528599219 SAHFFAYS 8 Unmodified _SAHFFAYS_ 0 0 0 REV__ENSG00000113205|ENST00000231130|PCDHB3 REV__ENSG00000113205|ENST00000231130|PCDHB3 MULTI-MSMS UPN47_class_I_Rep_2 3 465.2125244140625 2 465.211235 928.407917 0.19865 9.2413E-05 4.0261 0.001873 4.2247 0.0019654 465.2123544536332 96.819 0.035843 100.3 100.28 100.31 3.4791 6 4 2 0 0 0 0.82752 1 23781 23781 5.2307 0 1 111280 + 40021 18496 25288 25299 45776 45776 -0.059150327164843475 SAHVDILEY 9 Unmodified _SAHVDILEY_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MULTI-MSMS UPN47_class_I_Rep_1 2 523.7608032226562 2 523.761289 1045.50803 0.22549 0.0001181 -0.68556 -0.00035907 -0.46007 -0.00024097 523.7609297467469 52.462 0.86378 56.021 55.709 56.573 3.5585 139 62 3 0 0 0 0.20276 2 11616 11616;11734 20.454 0 1 453500 40022 1939 25289 25300 45777;45778 45777 -0.01290840173351171 SAHVDILEY 9 Unmodified _SAHVDILEY_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MULTI-MSMS UPN47_class_I_Rep_3 4 523.7608032226562 2 523.761289 1045.50803 0.39314 0.00020591 -0.39531 -0.00020705 -0.0021707 -1.1369E-06 523.7608925634835 52.861 0.93054 56.055 55.816 56.746 3.1948 117 59 3 0 0 0 0.20276 1 11816 11816 20.454 0 1 413750 40023 1939 25289 25300 45779 45779 -0.01290840173351171 SAIDPSVVATY 11 Unmodified _SAIDPSVVATY_ 0 0 0 REV__ENST00000463254.1_1_2:166615181-166618484:-|nuORF REV__ENST00000463254.1_1_2:166615181-166618484:-|nuORF MSMS UPN48_class_I_Rep_1 5 561.7866821289062 2 561.787504 1121.56045 NaN NaN NaN NaN NaN NaN NaN 48.537 1 52.06 51.56 52.56 3.5239 0 0 0 0.38417 1 9712 9712 2.9952 0 1 + 40024 18557 25290 25301 45780 45780 0.004536981696446674 SAIFSTIISF 10 Unmodified _SAIFSTIISF_ 0 0 0 L1M4b_dup4032|chr18:79387822-79391279:+|2.155890595281892|0.4339330632769884|2.31|151.0|205|3|anti-sense L1M4b_dup4032|chr18:79387822-79391279:+|2.155890595281892|0.4339330632769884|2.31|151.0|205|3|anti-sense L1M4b_dup4032|chr18:79387822-79391279:+|2.155890595281892|0.4339330632769884|2.31|151.0|205|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 543.2991333007812 2 543.297507 1084.58046 0.55266 0.00030026 0.23851 0.00012958 0.79117 0.00042984 543.2976444787972 66.591 0.25542 70.098 69.996 70.251 3.5077 27 16 2 0 0 0 0.3776 2 15167 15133;15167 21.537 0 1 83544 40025 9011 25291 25302 45781;45782 45782 0.04155493900248075 SAIGYLRPTY 10 Unmodified _SAIGYLRPTY_ 0 0 0 REV__Tigger3c_dup1660|chr11:77352376-77352949:+|1.5014811723451087|0.3337009768529977|2.17|150.0|27|1|anti-sense REV__Tigger3c_dup1660|chr11:77352376-77352949:+|1.5014811723451087|0.3337009768529977|2.17|150.0|27|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8067016601562 2 570.806031 1139.59751 0.60619 0.00034602 0.36871 0.00021046 0.9749 0.00055648 570.8063686471123 55.793 0.47583 59.349 58.989 59.465 3.5559 49 30 2 0 0 0 0.56155 1 11847 11847 2.7352 0 1 114770 + 40026 32769 25292 25303 45783 45783 0.03329414506060857 SAIHIKEQK 9 Unmodified _SAIHIKEQK_ 0 0 0 L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|120|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|120|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|120|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.30712890625 2 527.306198 1052.59784 0.30317 0.00015986 0.11049 5.826E-05 0.41366 0.00021812 527.3061564814957 98.179 0.28542 101.79 101.56 101.84 3.6065 49 32 2 0 0 0 0.47493 1 23672 23672 3.2813 0 1 115300 40027 14632 25293 25304 45784 45784 0.07364834225904815 SAIHIKEQK 9 Unmodified _SAIHIKEQK_ 0 0 0 L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|120|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|120|2|sense L1PA6_dup4448|chr11:58983952-58990073:-|2.2170299982935653|0.1728640175755595|3.68|151.0|120|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 527.306198 1052.59784 0.30317 0.00015986 0.11049 5.826E-05 0.41366 0.00021812 527.3061564814957 98.179 0.28542 101.79 101.56 101.84 3.6065 0.012169 5.7113E-05 NaN 3.2813 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 115300 40028 14632 25293 25304 0.07364834225904815 SAIIILKSVS 10 Unmodified _SAIIILKSVS_ 0 0 0 L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|161|2|anti-sense L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|161|2|anti-sense L1MA4A_dup4124|chr10:45476562-45479454:+|2.7702989240796394|0.2748959426028344|3.33|151.0|161|2|anti-sense MSMS UPN48_class_I_Rep_3 7 515.827880859375 2 515.828975 1029.6434 NaN NaN NaN NaN NaN NaN NaN 73.904 1 77.454 76.954 77.954 3.5505 0 0 0 0.53105 1 17308 17308 3.2813 0 1 40029 9809 25294 25305 45785 45785 0.1297605968827611 SAIISLTFRK 10 Unmodified _SAIISLTFRK_ 0 0 0 MER21C_dup4645|chr17:9316192-9317011:+|1.7939992077277382|0.006431169862015|8.12|151.0|44|2|anti-sense MER21C_dup4645|chr17:9316192-9317011:+|1.7939992077277382|0.006431169862015|8.12|151.0|44|2|anti-sense MER21C_dup4645|chr17:9316192-9317011:+|1.7939992077277382|0.006431169862015|8.12|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 568.3438720703125 2 568.345323 1134.67609 NaN NaN NaN NaN NaN NaN NaN 13.193 1 16.566 16.066 17.066 3.3734 0 0 0 0.53105 1 258 258 1.1933 0 1 40030 15905 25295 25306 45786 45786 0.11414266811107154 SAIPPYSHSAI 11 Unmodified _SAIPPYSHSAI_ 0 0 0 L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|139|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|139|2|sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|139|2|sense MSMS UPN47_class_I_Rep_2 3 571.7946166992188 2 571.795663 1141.57677 NaN NaN NaN NaN NaN NaN NaN 38.145 1 41.533 41.033 42.033 3.3879 0 0 0 0.38417 1 7355 7355 4.897 0 1 40031 14275 25296 25307 45787 45787 0.011648241263856107 SAIVVFIKFML 11 Unmodified _SAIVVFIKFML_ 0 0 0 REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|57|2|anti-sense REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|57|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 634.7283325195312 2 634.377778 1266.741 0.56678 0.00035955 -1.6436 -0.0010427 -1.0768 -0.0006831 634.3769134346488 107.39 0.040421 111.06 111.03 111.08 3.6724 4 2 2 0 0 0 0.4608 1 26320 26320 8.7454 0.58988 1 130990 + 40032 27182 25297 25308 45788 45788 0.11830125292772209 SAIVVFIKFML 11 Unmodified _SAIVVFIKFML_ 0 0 0 REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|57|2|anti-sense REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|57|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 634.377778 1266.741 0.51355 0.00032578 -0.8063 -0.0005115 -0.29275 -0.00018571 634.8782896567789 107.3 0.17311 110.84 110.68 110.85 3.5382 -0.0982 -7.1225E-05 NaN 8.7454 30 23 2 NaN NaN NaN NaN 0 NaN NaN 0 462240 + 40033 27182 25297 25308 0.11830125292772209 SAIVVFIKFML 11 Unmodified _SAIVVFIKFML_ 0 0 0 REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|57|2|anti-sense REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|57|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 634.377778 1266.741 0.49717 0.00031539 1.2573 0.00079763 1.7545 0.001113 634.3788369486322 107.23 0.032562 110.9 110.88 110.91 3.6783 -0.029281 0.002547 NaN 8.7454 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 164710 + 40034 27182 25297 25308 0.11830125292772209 SALDLVRTL 9 Unmodified _SALDLVRTL_ 0 0 0 REV__nc|ENSG00000204410|O43196-4|MSH5 REV__nc|ENSG00000204410|O43196-4|MSH5 MSMS UPN47_class_I_Rep_2 3 494.2952880859375 2 494.295299 986.576045 NaN NaN NaN NaN NaN NaN NaN 61.235 1 64.501 64.001 65.001 3.2654 0 0 0 0.38916 1 14380 14380 3.2813 0 1 + 40035 21193 25298 25309 45789 45789 0.08222029477337855 SALDSKLKVKL 11 Unmodified _SALDSKLKVKL_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MSMS UPN47_class_I_Rep_2 3 601.3793334960938 2 601.379363 1200.74417 NaN NaN NaN NaN NaN NaN NaN 94.176 1 97.648 97.148 98.148 3.472 0 0 0 0.38417 1 23219 23219 1.1933 0 1 40036 4257 25299 25310 45790 45790 0.15183091671133297 SALFKRAR 8 Unmodified _SALFKRAR_ 0 0 0 L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|20|2|sense L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|20|2|sense L1ME1_dup21304|chr11:78348307-78349192:+|2.0736760511567587|0.0575088128067716|5.17|151.0|20|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 474.281982421875 2 474.790518 947.566484 0.095869 4.5518E-05 0.31513 0.00014962 0.411 0.00019514 474.79057154541954 110.51 0.09803 114.14 114.12 114.22 3.6326 14 8 3 0 0 0 0.72333 1 26821 26821 0.6015 0 1 1177300 40037 12298 25300 25311 45791 45791 0.09060305982472983 SALIHLFT 8 Unmodified _SALIHLFT_ 0 0 0 REV__L1MA1_dup1271|chr5:76896062-76896961:-|3.3665641585706947|0.0026949215257149|10.29|150.0|49|2|anti-sense REV__L1MA1_dup1271|chr5:76896062-76896961:-|3.3665641585706947|0.0026949215257149|10.29|150.0|49|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.2603454589844 2 451.260728 900.506903 -0.34896 -0.00015747 0.15013 6.7747E-05 -0.19883 -8.9725E-05 451.2608165840166 39.279 0.38824 42.944 42.689 43.077 3.6652 29 23 2 0 0 0 0.82752 1 7639 7639 8.5933 0 1 45291 + 40038 24750 25301 25312 45792 45792 0.05266990248446746 SALIQVDHFCI 11 Unmodified _SALIQVDHFCI_ 0 0 0 Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|23|3|sense Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|23|3|sense Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 623.3186645507812 2 623.318448 1244.62234 NaN NaN NaN NaN NaN NaN NaN 51.58 1 55.103 54.603 55.603 3.5227 0 0 0 0.38417 1 10653 10653 1.1933 0.23107 1 40039 33389 25302 25313 45793 45793 0.009817263171044033 SALLAGVTSR 10 Unmodified _SALLAGVTSR_ 0 0 0 REV__nc|ENSG00000148057|Q5T6J7-2|IDNK REV__nc|ENSG00000148057|Q5T6J7-2|IDNK MSMS UPN46_class_I_Rep_3 1 487.7723693847656 2 487.785099 973.555644 NaN NaN NaN NaN NaN NaN NaN 16.03 1 16.03 15.53 16.53 0 0 0 0 0.53105 1 1022 1022 16.149 1.3108 1 + 40040 32009 25303 25314 45794 45794 0.06780858817535318 SALLHGHP 8 Unmodified _SALLHGHP_ 0 0 0 REV__MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|171|3|anti-sense REV__MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|171|3|anti-sense MSMS UPN48_class_I_Rep_3 7 416.2284240722656 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 76.313 1 79.896 79.396 80.396 3.5831 0 0 0 0.40738 1 17970 17970 0.79363 0 1 + 40041 31569 25304 25315 45795 45795 0.01788379757340408 SALSFAEEL 9 Unmodified _SALSFAEEL_ 0 0 0 REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L MULTI-MSMS UPN47_class_I_Rep_1 2 483.7424621582031 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.35081 1 9794 9794 10.824 0 1 1297200 + 40042 18431 25305 25316 45796 45796 -0.01353931438939071 SALTTFGRK 9 Unmodified _SALTTFGRK_ 0 0 0 REV__AluSz_dup2007|chr1:29175140-29175408:+|1.3497471436805837|0.2115894087180055|2.67|151.0|15|2|anti-sense REV__AluSz_dup2007|chr1:29175140-29175408:+|1.3497471436805837|0.2115894087180055|2.67|151.0|15|2|anti-sense MSMS UPN48_class_I_Rep_1 5 490.78106689453125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 34.775 1 38.289 37.789 38.789 3.5144 0 0 0 0.38639 1 5606 5606 3.9444 1.8846 1 + 40043 17197 25306 25317 45797 45797 0.05448876163097793 SALVLITDR 9 Unmodified _SALVLITDR_ 0 0 0 ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1 ENSG00000123358|ENST00000394825|NR4A1 ENSG00000123358|ENST00000394825|NR4A1 MSMS UPN46_class_I_Rep_3 1 494.2963562011719 2 494.295299 986.576045 NaN NaN NaN NaN NaN NaN NaN 108.26 1 108.26 107.76 108.76 0 0 0 0 0.36505 1 26464 26464 7.2892 0 1 40044 2421 25307 25318 45798 45798 0.08222029477326487 SALVLPYRL 9 Unmodified _SALVLPYRL_ 0 0 0 ENST00000508158.5_1_4:3386893-3430067:+|nuORF ENST00000508158.5_1_4:3386893-3430067:+|nuORF ENST00000508158.5_1_4:3386893-3430067:+|nuORF MSMS UPN47_class_I_Rep_1 2 516.3154296875 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.94 1 111.58 111.08 112.08 3.6355 0 0 0 0.35339 1 26481 26481 7.9102 0 1 40045 7165 25308 25319 45799 45799 0.10343210236646883 SALVPGRR 8 Unmodified _SALVPGRR_ 0 0 0 nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2 nc|ENSG00000115266|O95996-2|APC2 nc|ENSG00000115266|O95996-2|APC2 MULTI-MSMS UPN47_class_I_Rep_2 3 428.2616271972656 2 428.261594 854.508634 -0.27245 -0.00011668 0.16436 7.0391E-05 -0.10809 -4.6289E-05 428.2616663692971 108.26 0.5302 111.79 111.52 112.05 3.5333 131 54 3 0 0 0 0.82752 1 26261 26261 5.2307 0 1 5072600 40046 2116 25309 25320 45800 45800 0.07556044057048439 SALVVRRN 8 Unmodified _SALVVRRN_ 0 0 0 REV__nc|ENSG00000172663|Q9H6X4-2|TMEM134 REV__nc|ENSG00000172663|Q9H6X4-2|TMEM134 MSMS UPN46_class_I_Rep_3 1 457.7804260253906 2 457.780151 913.545748 NaN NaN NaN NaN NaN NaN NaN 84.645 1 84.645 84.145 85.145 0 0 0 0 0.4044 1 20150 20150 4.756 0 1 + 40047 20454 25310 25321 45801 45801 0.08551715602811782 SALVVRRN 8 Unmodified _SALVVRRN_ 0 0 0 REV__nc|ENSG00000172663|Q9H6X4-2|TMEM134 REV__nc|ENSG00000172663|Q9H6X4-2|TMEM134 MULTI-MSMS UPN47_class_I_Rep_2 3 457.77996826171875 2 457.780151 913.545748 -0.004385 -2.0074E-06 0.23014 0.00010535 0.22576 0.00010335 457.78020287314047 81.389 0.6451 84.773 84.503 85.148 3.3839 113 74 2 0 0 0 0.82752 1 20297 20297 4.756 0 1 161130 + 40048 20454 25310 25321 45802 45802 0.08551715602811782 SANCAHTVW 9 Unmodified _SANCAHTVW_ 0 0 0 REV__AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|1|1|sense REV__AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 494.715576171875 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 78.261 1 81.883 81.383 82.383 3.6216 0 0 0 0.39518 1 18521 18521 1.8442 1.0506 1 + 40049 16933 25311 25322 45803 45803 -0.07096489190939792 SAPFEWFF 8 Unmodified _SAPFEWFF_ 0 0 0 L1MEc_dup2691|chr2:135694452-135695349:+|1.4746025214023706|0.109793433191269|3.75|151.0|65|3|anti-sense L1MEc_dup2691|chr2:135694452-135695349:+|1.4746025214023706|0.109793433191269|3.75|151.0|65|3|anti-sense L1MEc_dup2691|chr2:135694452-135695349:+|1.4746025214023706|0.109793433191269|3.75|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.7384033203125 2 515.737086 1029.45962 0.37808 0.00019499 0.38591 0.00019903 0.76399 0.00039402 515.7379005974291 51.083 0.10748 54.299 54.226 54.334 3.2163 6 4 2 0 0 0 0.82752 1 11344 11344 0.79363 0 1 28589 40050 13086 25312 25323 45804 45804 -0.053932890225723895 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 625.3648071289062 2 625.366787 1248.71902 0.68211 0.00042657 -1.3483 -0.00084319 -0.66621 -0.00041662 625.365667460831 95.433 0.52507 95.433 95.172 95.697 0 90 48 3 0 0 0 0.59712 4 23152 23152;23180;23208;23222 5.2969 0.96765 1 6362900 + 40051 22615 25313 25324 45805;45806;45807;45808 45805 0.10461036868559859 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 625.3658447265625 2 625.366787 1248.71902 0.43012 0.00026898 -0.89731 -0.00056115 -0.46719 -0.00029216 625.3659364902918 91.364 0.76398 94.99 94.735 95.499 3.626 199 109 3 0 0 0 0.59712 5 21923 21923;21951;21965;21982;22015 5.2969 0.96765 1 12429000 + 40052 22615 25313 25324 45809;45810;45811;45812;45813 45809 0.10461036868559859 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 625.3673706054688 2 625.366787 1248.71902 0.42729 0.00026722 -0.63791 -0.00039893 -0.21061 -0.00013171 625.3666584784294 98.694 0.43051 102.3 101.99 102.42 3.6065 92 61 2 0 0 0 0.59712 2 23811 23811;23843 5.2969 0.39987 1 2158100 + 40053 22615 25313 25324 45814;45815 45814 0.10461036868559859 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 625.3680419921875 2 625.366787 1248.71902 0.49453 0.00030926 -0.75494 -0.00047212 -0.26042 -0.00016286 625.3661316892125 91.264 0.72783 95.02 94.702 95.43 3.7554 217 107 3 0 0 0 0.59712 4 21674 21674;21715;21745;21801 5.2969 2.0156 1 12925000 + 40054 22615 25313 25324 45816;45817;45818;45819 45816 0.10461036868559859 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 625.36572265625 2 625.366787 1248.71902 0.49435 0.00030915 -0.68667 -0.00042942 -0.19232 -0.00012027 625.3664105094967 98.376 0.58704 102.15 101.95 102.54 3.7707 152 83 2 0 0 0 0.59712 1 23431 23431 5.2969 0.39987 1 3129300 + 40055 22615 25313 25324 45820 45820 0.10461036868559859 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 625.8681640625 2 625.366787 1248.71902 0.60808 0.00038027 -1.0379 -0.00064904 -0.42977 -0.00026876 625.3659123833414 91.277 0.71165 95.14 94.802 95.514 3.8634 271 104 3 0 0 0 0.59712 3 21599 21599;21640;21676 5.2969 0.96765 1 15856000 + 40056 22615 25313 25324 45821;45822;45823 45821 0.10461036868559859 SAPLLLHTLER 11 Unmodified _SAPLLLHTLER_ 0 0 0 REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 625.3663330078125 2 625.366787 1248.71902 0.59742 0.0003736 -0.69606 -0.00043529 -0.098643 -6.1688E-05 625.3665095251196 98.466 0.59988 102.37 102.12 102.72 3.9022 129 85 2 0 0 0 0.59712 1 23356 23356 5.2969 0.39987 1 2901400 + 40057 22615 25313 25324 45824 45824 0.10461036868559859 SAPLVHVSVF 10 Unmodified _SAPLVHVSVF_ 0 0 0 L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|171|3|anti-sense L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|171|3|anti-sense L1MA2_dup6636|chr15:76394706-76397474:-|1.3781506335275298|0.0499897129890719|4.78|151.0|171|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 528.2982177734375 2 528.297842 1054.58113 0.49234 0.0002601 -0.56519 -0.00029859 -0.072849 -3.8486E-05 528.2977468955568 63.519 0.11191 67.028 66.975 67.087 3.5091 16 9 2 0 0 0 0.46161 1 14218 14218 14.838 0 1 184020 40058 9443 25314 25325 45825 45825 0.056023333399252806 SAPPKSHVL 9 Unmodified _SAPPKSHVL_ 0 0 0 THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 468.2691650390625 2 468.269084 934.523616 0.17058 7.9875E-05 -0.18965 -8.881E-05 -0.01908 -8.9344E-06 468.26897762975966 57.17 0.4121 60.664 60.53 60.942 3.4942 43 34 2 0 0 0 0.36392 1 12373 12373 10.074 0 1 113790 40059 32914 25315 25326 45826 45826 0.05373491134378128 SAPPKSHVL 9 Unmodified _SAPPKSHVL_ 0 0 0 THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 468.26885986328125 2 468.269084 934.523616 0.11649 5.4549E-05 -0.20759 -9.7207E-05 -0.091097 -4.2658E-05 468.2689626172929 57.044 0.40843 60.587 60.456 60.864 3.5427 61 40 2 0 0 0 0.36392 1 12239 12239 10.074 0 1 161490 40060 32914 25315 25326 45827 45827 0.05373491134378128 SAPPKSHVL 9 Unmodified _SAPPKSHVL_ 0 0 0 THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 468.269084 934.523616 0.17058 7.9875E-05 -0.18965 -8.881E-05 -0.01908 -8.9344E-06 468.26897762975966 57.17 0.4121 60.664 60.53 60.942 3.4942 0.012122 3.9544E-05 NaN 10.074 43 34 2 NaN NaN NaN NaN 0 NaN NaN 0 113790 40061 32914 25315 25326 0.05373491134378128 SAPPKSHVL 9 Unmodified _SAPPKSHVL_ 0 0 0 THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 468.269084 934.523616 0.30673 0.00014363 -0.32647 -0.00015288 -0.01975 -9.2482E-06 468.2689422361891 57.191 0.35075 60.705 60.527 60.877 3.5142 0.053163 -8.8593E-05 NaN 10.074 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 122900 40062 32914 25315 25326 0.05373491134378128 SAPPKSHVL 9 Unmodified _SAPPKSHVL_ 0 0 0 THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|85|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 468.269084 934.523616 0.11649 5.4549E-05 -0.20759 -9.7207E-05 -0.091097 -4.2658E-05 468.2689626172929 57.044 0.40843 60.587 60.456 60.864 3.5427 -0.065286 2.2748E-05 NaN 10.074 61 40 2 NaN NaN NaN NaN 0 NaN NaN 0 161490 40063 32914 25315 25326 0.05373491134378128 SAPPLLLPV 9 Unmodified _SAPPLLLPV_ 0 0 0 REV__ENSG00000181274|ENST00000371019|FRAT2 REV__ENSG00000181274|ENST00000371019|FRAT2 MSMS UPN47_class_I_Rep_1 2 453.78515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 55.083 1 58.584 58.084 59.084 3.5014 0 0 0 0.4007 1 12476 12476 0.52476 0 1 + 40064 20728 25316 25327 45828 45828 0.1020473394231658 SAPSAHVEFY 10 Unmodified _SAPSAHVEFY_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS UPN47_class_I_Rep_1 2 554.7605590820312 2 554.258914 1106.50327 0.41354 0.00022921 -0.19906 -0.00011033 0.21448 0.00011888 554.2587116677233 62.34 0.67315 65.708 65.411 66.084 3.3681 79 43 3 0 0 0 0.54078 1 14637 14637 6.7232 0.96273 1 145810 40065 3125 25317 25328 45829 45829 -0.04571724316087966 SAPSALHHRL 10 Unmodified _SAPSALHHRL_ 0 0 0 REV__ENST00000585451.5_1_2:179388231-179625684:+|nuORF REV__ENST00000585451.5_1_2:179388231-179625684:+|nuORF MSMS UPN46_class_I_Rep_3 1 544.8016357421875 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 30.001 1 30.001 29.501 30.501 0 0 0 0 0.53105 1 4826 4826 6.2058 1.3088 1 + 40066 22292 25318 25329 45830 45830 0.048384856602069704 SAPSPLTH 8 Unmodified _SAPSPLTH_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MSMS UPN47_class_I_Rep_1 2 405.21173095703125 2 405.211235 808.407917 NaN NaN NaN NaN NaN NaN NaN 96.27 1 100.05 99.547 100.55 3.7767 0 0 0 0.40404 1 23871 23871 5.2307 0 1 40067 862 25319 25330 45831 45831 -0.003950327164830014 SAPYAQRR 8 Unmodified _SAPYAQRR_ 0 0 0 REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 475.2200622558594 2 474.754133 947.493713 0.23396 0.00011107 -1.5991 -0.00075919 -1.3652 -0.00064811 474.7508667994799 99.916 0.63765 103.71 103.3 103.93 3.7942 118 80 2 0 0 0 0.72333 1 24705 24705 5.2307 0.90143 1 289560 + 40068 22063 25320 25331 45832 45832 0.017865521890371383 SAPYAQRR 8 Unmodified _SAPYAQRR_ 0 0 0 REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 474.754133 947.493713 0.25245 0.00011985 -1.3171 -0.0006253 -1.0646 -0.00050545 474.75096309974464 103.91 0.49931 103.91 103.65 104.15 0 0.28237 0.00018795 NaN 5.2307 78 45 2 NaN NaN NaN NaN 0 NaN NaN 0 235960 + 40069 22063 25320 25331 0.017865521890371383 SAPYAQRR 8 Unmodified _SAPYAQRR_ 0 0 0 REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 474.754133 947.493713 0.30565 0.00014511 -1.5823 -0.00075122 -1.2767 -0.00060611 474.75100053770024 99.987 0.65854 103.48 103.09 103.75 3.4974 -0.14454 -6.3896E-05 NaN 5.2307 111 89 2 NaN NaN NaN NaN 0 NaN NaN 0 319070 + 40070 22063 25320 25331 0.017865521890371383 SAPYAQRR 8 Unmodified _SAPYAQRR_ 0 0 0 REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF REV__ENST00000381588.8_1_13:26795433-26796285:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 474.754133 947.493713 0.21951 0.00010421 -1.4871 -0.00070599 -1.2676 -0.00060177 474.75105717634625 99.652 0.36316 103.41 103.28 103.64 3.7575 -0.21931 2.6575E-05 NaN 5.2307 82 45 2 NaN NaN NaN NaN 0 NaN NaN 0 350380 + 40071 22063 25320 25331 0.017865521890371383 SAQGRLILFFV 11 Unmodified _SAQGRLILFFV_ 0 0 0 REV__L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|113|1|anti-sense REV__L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|113|1|anti-sense MSMS UPN47_class_I_Rep_2 3 625.8658447265625 2 625.866423 1249.71829 NaN NaN NaN NaN NaN NaN NaN 108.76 1 112.29 111.79 112.79 3.5333 0 0 0 0.38417 1 26423 26423 5.2969 0.96765 1 + 40072 25590 25321 25332 45833 45833 0.1034224221950808 SAQKIVLKKI 10 Unmodified _SAQKIVLKKI_ 0 0 0 REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|7|1|sense REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3793334960938 2 564.379166 1126.74378 0.50118 0.00028286 -0.39673 -0.00022391 0.10445 5.8952E-05 564.3788500001558 107.92 0.186 111.56 111.44 111.63 3.6355 15 10 2 0 0 0 0.54822 1 26475 26475 5.7319 0 1 3944900 + 40073 28739 25322 25333 45834 45834 0.18547716741932163 SAQLTTRK 8 Unmodified _SAQLTTRK_ 0 0 0 REV__L1PA15_dup644|chr2:39316900-39318409:+|1.1446474181394155|0.2639994477917565|2.12|150.0|2|1|sense REV__L1PA15_dup644|chr2:39316900-39318409:+|1.1446474181394155|0.2639994477917565|2.12|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 452.7637023925781 2 452.764166 903.513779 NaN NaN NaN NaN NaN NaN NaN 38.788 1 38.788 38.288 39.288 0 0 0 0 0.40157 1 7410 7410 7.2892 0 1 + 40074 29268 25323 25334 45835 45835 0.05816303128983691 SAQRPSVGWRG 11 Unmodified _SAQRPSVGWRG_ 0 0 0 REV__SVA_D_dup1235|chr17:39336994-39338549:+|2.02252923070285|0.0906312383880393|4.48|151.0|20|2|sense REV__SVA_D_dup1235|chr17:39336994-39338549:+|2.02252923070285|0.0906312383880393|4.48|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 600.8134155273438 2 600.815253 1199.61595 NaN NaN NaN NaN NaN NaN NaN 74.746 1 77.992 77.492 78.492 3.2464 0 0 0 0.38417 1 18515 18515 2.086 0.026257 1 + 40075 32193 25324 25335 45836 45836 0.02412969200599946 SARAKIRIT 9 Unmodified _SARAKIRIT_ 0 0 0 nc|ENSG00000163870|Q86W33-2|TPRA1;nc|ENSG00000163870|Q86W33-3|TPRA1;ENSG00000163870|ENST00000355552|TPRA1 nc|ENSG00000163870|Q86W33-2|TPRA1 nc|ENSG00000163870|Q86W33-2|TPRA1 MULTI-SECPEP UPN47_class_I_Rep_2 3 508.3018798828125 2 508.322183 1014.62981 0.10481 5.3275E-05 3.7202 0.001891 3.825 0.0019443 508.82643006039234 49.171 0.13534 52.518 52.48 52.616 3.3465 12 8 2 0 0 0 0.12281 1 10688 10688 4.3292 0.38484 1 31650 40076 4051 25325 25336 45837 45837 0.12308246699683423 SARFAEIKDP 10 Unmodified _SARFAEIKDP_ 0 0 0 REV__ENSG00000170950|ENST00000304801|PGK2 REV__ENSG00000170950|ENST00000304801|PGK2 MSMS UPN47_class_I_Rep_3 4 567.30078125 2 567.301113 1132.58767 NaN NaN NaN NaN NaN NaN NaN 48.517 1 51.752 51.252 52.252 3.2345 0 0 0 0.53105 1 10555 10555 2.7352 0.67545 1 + 40077 20392 25326 25337 45838 45838 0.026682265006684247 SARVRAVFEK 10 Unmodified _SARVRAVFEK_ 0 0 0 REV__nc|ENSG00000079950|O15400-2|STX7 REV__nc|ENSG00000079950|O15400-2|STX7 MSMS UPN46_class_I_Rep_3 1 581.8386840820312 2 581.838197 1161.66184 NaN NaN NaN NaN NaN NaN NaN 109.67 1 109.67 109.17 110.17 0 0 0 0 0.53105 1 26960 26960 2.9952 0 1 + 40078 17901 25327 25338 45839 45839 0.0874761438283258 SASFLFLLCL 10 Unmodified _SASFLFLLCL_ 0 0 0 REV__LTR5B_dup411|chr19:57823627-57824595:+|3.678751932727512|0.0701059888250096|5.71|151.0|11|1|sense REV__LTR5B_dup411|chr19:57823627-57824595:+|3.678751932727512|0.0701059888250096|5.71|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 557.4166870117188 2 557.304278 1112.594 NaN NaN NaN NaN NaN NaN NaN 59.504 1 59.504 59.004 60.004 0 0 0 0 0.53105 1 13159 13159 4.3292 1.334 1 + 40079 30984 25328 25339 45840 45840 0.04221028407800986 SASKEQYYVR 10 Unmodified _SASKEQYYVR_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-SECPEP UPN46_class_I_Rep_3 1 410.2181091308594 3 410.875293 1229.60405 -0.53613 -0.00022028 -0.28433 -0.00011682 -0.82045 -0.0003371 410.8752763989848 13.047 0.46688 13.047 12.88 13.347 0 94 47 3 0 0 0 0.84575 1 328 328 1.5923 0 1 147620 40080 5133 25329 25340 45841 45841 -0.001566923332575243 SASPARKLKLV 11 Unmodified _SASPARKLKLV_ 0 0 0 REV__Tigger17c_dup700|chr18:50278690-50279777:-|1.254289798233926|0.3235971631516798|1.95|151.0|52|1|anti-sense REV__Tigger17c_dup700|chr18:50278690-50279777:-|1.254289798233926|0.3235971631516798|1.95|151.0|52|1|anti-sense MSMS UPN46_class_I_Rep_3 1 585.31787109375 2 585.371872 1168.72919 NaN NaN NaN NaN NaN NaN NaN 52.782 1 52.782 52.282 53.282 0 0 0 0 0.38417 1 11308 11308 2.9952 1.5133 1 + 40081 32611 25330 25341 45842 45842 0.15157644593773512 SASSSISSSSE 11 Unmodified _SASSSISSSSE_ 0 0 0 REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2 REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2 MSMS UPN46_class_I_Rep_3 1 514.35888671875 2 514.722558 1027.43056 NaN NaN NaN NaN NaN NaN NaN 20.798 1 20.798 20.298 21.298 0 0 0 0 0.38417 1 2223 2223 0 0 1 + 40082 19816 25331 25342 45843 45843 -0.08205522900152573 SATPPSLTLL 10 Unmodified _SATPPSLTLL_ 0 0 0 L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|82|2|anti-sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|82|2|anti-sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|82|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 500.2894287109375 2 500.289682 998.564812 0.37432 0.00018727 -0.13036 -6.522E-05 0.24396 0.00012205 500.2894706823248 59.192 0.622 62.684 62.4 63.022 3.4924 60 40 2 0 0 0 0.35076 1 13006 13006 24.021 0 1 151630 40083 10024 25332 25343 45844 45844 0.06547207383187015 SATPSLPTLL 10 Unmodified _SATPSLPTLL_ 0 0 0 REV__ENSG00000022840|ENST00000325954|RNF10 REV__ENSG00000022840|ENST00000325954|RNF10 MULTI-MSMS UPN48_class_I_Rep_3 7 500.289306640625 2 500.289682 998.564812 0.21969 0.00010991 -0.10745 -5.3758E-05 0.11224 5.6152E-05 500.28955543820825 59.096 0.61079 62.619 62.294 62.905 3.5231 53 41 2 0 0 0 0.35076 1 12883 12883 24.021 0 1 147500 + 40084 17612 25333 25344 45845 45845 0.06547207383187015 SATSTGLLLP 10 Unmodified _SATSTGLLLP_ 0 0 0 REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 479.7745056152344 2 480.274032 958.533512 -0.33805 -0.00016235 4.2888 0.0020598 3.9508 0.0018974 480.2758649321013 13.205 0.15758 13.205 13.11 13.268 0 19 16 2 0 0 0 0.84575 1 318 318 1.4819 0 1 35777 + 40085 23112 25334 25345 45846 45846 0.052586343491157095 SATTKRIQ 8 Unmodified _SATTKRIQ_ 0 0 0 REV__ENST00000572389.1_1_17:80897164-80900336:+|nuORF REV__ENST00000572389.1_1_17:80897164-80900336:+|nuORF MSMS UPN46_class_I_Rep_3 1 452.7635192871094 2 452.764166 903.513779 NaN NaN NaN NaN NaN NaN NaN 38.648 1 38.648 38.148 39.148 0 0 0 0 0.39819 1 7373 7373 8.5933 0 1 + 40086 23093 25335 25346 45847 45847 0.05816303128983691 SAVITGFHRA 10 Unmodified _SAVITGFHRA_ 0 0 0 chr10:46836349-46836472|136|19.9|0.0|20.92|+|2|TE_info:AluSx3,AluSx3_dup18702,Alu,SINE,donor,-,46836080,46836349|None,AGAP13P|5 chr10:46836349-46836472|136|19.9|0.0|20.92|+|2|TE_info:AluSx3,AluSx3_dup18702,Alu,SINE,donor,-,46836080,46836349|None,AGAP13P|5 chr10:46836349-46836472|136|19.9|0.0|20.92|+|2|TE_info:AluSx3,AluSx3_dup18702,Alu,SINE,donor,-,46836080,46836349|None,AGAP13P|5 MSMS UPN48_class_I_Rep_2 6 529.7890014648438 2 529.790715 1057.56688 NaN NaN NaN NaN NaN NaN NaN 27.135 1 30.766 30.266 31.266 3.6311 0 0 0 0.53105 1 3551 3551 2.9952 0.93549 1 40087 573 25336 25347 45848 45848 0.04039680911682808 SAVIVGGLAI 10 Unmodified _SAVIVGGLAI_ 0 0 0 REV__ENSG00000126243|ENST00000246529|LRFN3 REV__ENSG00000126243|ENST00000246529|LRFN3 MULTI-MSMS UPN48_class_I_Rep_2 6 450.2818908691406 2 450.28166 898.548768 0.25909 0.00011666 0.068262 3.0737E-05 0.32735 0.0001474 450.2816237794549 54.647 0.55611 58.229 58.027 58.584 3.5817 45 35 2 0 0 0 0.40227 2 11596 11551;11596 19.257 0 1 68777 + 40088 18859 25337 25348 45849;45850 45850 0.09543545936935516 SAVIVGGLAI 10 Unmodified _SAVIVGGLAI_ 0 0 0 REV__ENSG00000126243|ENST00000246529|LRFN3 REV__ENSG00000126243|ENST00000246529|LRFN3 MULTI-SECPEP UPN48_class_I_Rep_2 6 450.7837219238281 2 450.28166 898.548768 0.25909 0.00011666 0.068262 3.0737E-05 0.32735 0.0001474 450.2816237794549 54.647 0.55611 58.229 58.027 58.584 3.5817 45 35 2 0 0 0 0.84575 1 11551 11551 13.906 0 1 68777 + 40089 18859 25337 25348 45851 45851 0.09543545936935516 SAVIVGGLAI 10 Unmodified _SAVIVGGLAI_ 0 0 0 REV__ENSG00000126243|ENST00000246529|LRFN3 REV__ENSG00000126243|ENST00000246529|LRFN3 MSMS UPN48_class_I_Rep_3 7 450.2813720703125 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 54.593 1 58.162 57.662 58.662 3.5694 0 0 0 0.53105 1 11492 11492 19.257 0 1 + 40090 18859 25337 25348 45852 45852 0.09543545936935516 SAVLFTSVRST 11 Unmodified _SAVLFTSVRST_ 0 0 0 L1MA5A_dup1894|chr9:92981846-92982542:-|1.658714551052665|0.0082162955207885|7.66|151.0|37|2|anti-sense L1MA5A_dup1894|chr9:92981846-92982542:-|1.658714551052665|0.0082162955207885|7.66|151.0|37|2|anti-sense L1MA5A_dup1894|chr9:92981846-92982542:-|1.658714551052665|0.0082162955207885|7.66|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_3 7 584.010986328125 2 584.322045 1166.62954 NaN NaN NaN NaN NaN NaN NaN 101.96 1 105.74 105.24 106.24 3.776 0 0 0 0.38417 1 24101 24101 1.0715 0 1 40091 9939 25338 25349 45853 45853 0.05288782189199992 SAVLHRKHSV 10 Unmodified _SAVLHRKHSV_ 0 0 0 REV__L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|54|1|anti-sense REV__L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.8319091796875 2 567.330539 1132.64652 0.48222 0.00027358 0.29986 0.00017012 0.78208 0.0004437 567.3306192659659 81.177 0.43725 84.854 84.577 85.015 3.6772 82 55 2 0 0 0 0.56155 1 19192 19192 2.7352 0.89096 1 319390 + 40092 27704 25339 25350 45854 45854 0.08550747585650242 SAVLHRKHSV 10 Unmodified _SAVLHRKHSV_ 0 0 0 REV__L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|54|1|anti-sense REV__L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|54|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 567.8319091796875 2 567.330539 1132.64652 0.48222 0.00027358 0.29986 0.00017012 0.78208 0.0004437 567.3306192659659 81.177 0.43725 84.854 84.577 85.015 3.6772 82 55 2 0 0 0 0.84575 1 19192 19192 2.7352 2.7352 1 319390 + 40093 27704 25339 25350 45855 45855 0.08550747585650242 SAVLKCLLDI 10 Unmodified _SAVLKCLLDI_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS UPN46_class_I_Rep_3 1 537.8137817382812 2 537.81501 1073.61547 NaN NaN NaN NaN NaN NaN NaN 108.81 1 108.81 108.31 109.31 0 0 0 0 0.53105 1 26641 26641 13.042 6.3193 1 40094 3370 25340 25351 45856 45856 0.08160413436553426 SAVLKCLLDI 10 Unmodified _SAVLKCLLDI_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS UPN46_class_I_Rep_3 1 537.8124389648438 2 537.81501 1073.61547 NaN NaN NaN NaN NaN NaN NaN 109.66 1 109.66 109.16 110.16 0 0 0 0 0.53105 1 26957 26957 5.2969 0.54088 1 40095 3370 25340 25351 45857 45857 0.08160413436553426 SAVLKCLLDI 10 Unmodified _SAVLKCLLDI_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS UPN47_class_I_Rep_3 4 537.8136596679688 2 537.81501 1073.61547 NaN NaN NaN NaN NaN NaN NaN 108.66 1 112.2 111.7 112.7 3.5382 0 0 0 0.53105 1 26615 26615 13.042 4.8869 1 40096 3370 25340 25351 45858 45858 0.08160413436553426 SAVLKCLLDI 10 Unmodified _SAVLKCLLDI_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS UPN48_class_I_Rep_3 7 537.88134765625 2 537.81501 1073.61547 NaN NaN NaN NaN NaN NaN NaN 108.91 1 112.59 112.09 113.09 3.6751 0 0 0 0.53105 1 25835 25835 13.042 4.8869 1 40097 3370 25340 25351 45859 45859 0.08160413436553426 SAVLKCLLDI 10 Unmodified _SAVLKCLLDI_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS UPN48_class_I_Rep_3 7 537.8129272460938 2 537.81501 1073.61547 NaN NaN NaN NaN NaN NaN NaN 108.92 1 112.6 112.1 113.1 3.6751 0 0 0 0.53105 1 25839 25839 8.7454 1.4562 1 40098 3370 25340 25351 45860 45860 0.08160413436553426 SAVLLVDLN 9 Unmodified _SAVLLVDLN_ 0 0 0 REV__nc|ENSG00000197774|A4GXA9-2|EME2 REV__nc|ENSG00000197774|A4GXA9-2|EME2 MSMS UPN48_class_I_Rep_1 5 472.2886962890625 2 472.276575 942.538597 NaN NaN NaN NaN NaN NaN NaN 108.07 1 111.7 111.2 112.2 3.6313 0 0 0 0.29868 1 26112 26112 10.824 0 1 + 40099 21097 25341 25352 45861 45861 0.06502938211701803 SAVLPIRHAR 10 Unmodified _SAVLPIRHAR_ 0 0 0 REV__ENST00000524141.5_1_8:48625456-48625810:+|nuORF REV__ENST00000524141.5_1_8:48625456-48625810:+|nuORF MSMS UPN47_class_I_Rep_1 2 560.343017578125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 107.96 1 111.6 111.1 112.1 3.6355 0 0 0 0.53105 1 26486 26486 14.838 1.7958 1 + 40100 22801 25342 25353 45862 45862 0.11267337965296065 SAVLPIRHAR 10 Unmodified _SAVLPIRHAR_ 0 0 0 REV__ENST00000524141.5_1_8:48625456-48625810:+|nuORF REV__ENST00000524141.5_1_8:48625456-48625810:+|nuORF MSMS UPN48_class_I_Rep_1 5 560.3421630859375 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.5 111 112 3.6313 0 0 0 0.53105 1 26034 26034 14.838 2.5976 1 + 40101 22801 25342 25353 45863 45863 0.11267337965296065 SAVPRHWV 8 Unmodified _SAVPRHWV_ 0 0 0 ENST00000479621.5_1_2:106776713-106776821:-|nuORF ENST00000479621.5_1_2:106776713-106776821:-|nuORF ENST00000479621.5_1_2:106776713-106776821:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.270751953125 2 476.261594 950.508634 -0.26512 -0.00012627 -1.3383 -0.00063737 -1.6034 -0.00076364 476.2607801612781 43.379 0.52682 46.621 46.357 46.884 3.2419 55 32 2 0 0 0 0.82752 1 9060 9060 2.5775 0.92486 1 79209 40102 6989 25343 25354 45864 45864 0.031400440570337196 SAVSRPPCAL 10 Unmodified _SAVSRPPCAL_ 0 0 0 ENST00000350498.7_1_7:98994100-98994295:-|nuORF ENST00000350498.7_1_7:98994100-98994295:-|nuORF ENST00000350498.7_1_7:98994100-98994295:-|nuORF MSMS UPN46_class_I_Rep_3 1 500.7662353515625 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 114.1 1 114.1 113.6 114.6 0 0 0 0 0.53105 1 28193 28193 1.4819 0.68827 1 40103 6270 25344 25355 45865 45865 0.017372299113503686 SAWSTVSF 8 Unmodified _SAWSTVSF_ 0 0 0 REV__ENSG00000185561|ENST00000330676|TLCD2 REV__ENSG00000185561|ENST00000330676|TLCD2 MSMS UPN46_class_I_Rep_3 1 442.709228515625 2 442.711068 883.407583 NaN NaN NaN NaN NaN NaN NaN 14.53 1 14.53 14.03 15.03 0 0 0 0 0.4044 1 656 656 4.756 0 1 + 40104 20857 25345 25356 45866 45866 -0.03878452436333646 SAYPHQLSF 9 Unmodified _SAYPHQLSF_ 0 0 0 ENSG00000185052|ENST00000328041|SLC24A3 ENSG00000185052|ENST00000328041|SLC24A3 ENSG00000185052|ENST00000328041|SLC24A3 MSMS UPN48_class_I_Rep_1 5 525.2556762695312 2 525.256174 1048.49779 NaN NaN NaN NaN NaN NaN NaN 47.909 1 51.431 50.931 51.931 3.5219 0 0 0 0.3824 1 9518 9518 4.897 0.95262 1 40105 5084 25346 25357 45867 45867 -0.024514031078979315 SAYPHQLSF 9 Unmodified _SAYPHQLSF_ 0 0 0 ENSG00000185052|ENST00000328041|SLC24A3 ENSG00000185052|ENST00000328041|SLC24A3 ENSG00000185052|ENST00000328041|SLC24A3 MSMS UPN48_class_I_Rep_3 7 525.2567138671875 2 525.256174 1048.49779 NaN NaN NaN NaN NaN NaN NaN 47.726 1 51.36 50.86 51.86 3.6339 0 0 0 0.29913 1 9395 9395 10.8 2.2062 1 40106 5084 25346 25357 45868 45868 -0.024514031078979315 SCCSMDVKI 9 Unmodified _SCCSMDVKI_ 0 0 0 L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|7|1|sense L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|7|1|sense L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 492.7804260253906 2 493.211206 984.407859 NaN NaN NaN NaN NaN NaN NaN 71.593 1 74.883 74.383 75.383 3.2899 0 0 0 0.39598 1 17507 17507 1.6526 0.85899 1 40107 10180 25347 25358 45869 45869 -0.08496860094646763 SCCYCCPCCC 10 Unmodified _SCCYCCPCCC_ 0 0 0 REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS UPN46_class_I_Rep_3 1 543.8167724609375 2 544.118765 1086.22298 NaN NaN NaN NaN NaN NaN NaN 36.61 1 36.61 36.11 37.11 0 0 0 0 0.53105 1 6805 6805 0 0 1 + 40108 21844 25348 25359 45870 45870 -0.31668573824231316 SCCYCCPCCC 10 Unmodified _SCCYCCPCCC_ 0 0 0 REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS UPN46_class_I_Rep_3 1 544.1204833984375 2 544.118765 1086.22298 NaN NaN NaN NaN NaN NaN NaN 43.752 1 43.752 43.252 44.252 0 0 0 0 0.53105 1 8759 8759 0 0 1 + 40109 21844 25348 25359 45871 45871 -0.31668573824231316 SCCYCDSCDPE 11 Unmodified _SCCYCDSCDPE_ 0 0 0 REV__L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense REV__L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|65|1|anti-sense MSMS UPN46_class_I_Rep_3 1 612.717529296875 2 612.669242 1223.32393 NaN NaN NaN NaN NaN NaN NaN 113.83 1 113.83 113.33 114.33 0 0 0 0 0.38417 1 28117 28117 0 0 1 + 40110 30629 25349 25360 45872 45872 -0.2787980404455084 SCDCSDTF 8 Unmodified _SCDCSDTF_ 0 0 0 REV__ENSG00000136169|ENST00000611815|SETDB2 REV__ENSG00000136169|ENST00000611815|SETDB2 MSMS UPN48_class_I_Rep_2 6 439.25738525390625 2 439.138761 876.262969 NaN NaN NaN NaN NaN NaN NaN 61.361 1 64.837 64.337 65.337 3.4765 0 0 0 0.40738 1 13625 13625 0.79363 0 1 + 40111 19175 25350 25361 45873 45873 -0.1801120497013926 SCDFCVCCKD 10 Unmodified _SCDFCVCCKD_ 0 0 0 REV__Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|60|3|sense REV__Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|60|3|sense MSMS UPN48_class_I_Rep_1 5 561.6888427734375 2 561.68978 1121.36501 NaN NaN NaN NaN NaN NaN NaN 82.004 1 85.579 85.079 86.079 3.5753 0 0 0 0.53105 1 19573 19573 0.35063 0.35063 1 + 40112 32526 25351 25362 45874 45874 -0.19081998214392115 SCDRAGMC 8 Unmodified _SCDRAGMC_ 0 0 0 REV__L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|179|3|anti-sense REV__L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|179|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 421.7513427734375 2 421.651316 841.288078 0.02237 9.4323E-06 -3.5835 -0.001511 -3.5611 -0.0015015 421.65229152185714 79.763 0.03231 83.228 83.209 83.241 3.465 5 3 2 0 0 0 0.72333 1 19885 19885 0.79363 0 1 16614 + 40113 24023 25352 25363 45875 45875 -0.13891428648560122 SCDRAGMC 8 Unmodified _SCDRAGMC_ 0 0 0 REV__L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|179|3|anti-sense REV__L1M1_dup1748|chr3:130885940-130888933:-|5.592478460622983|0.171525431785379|5.03|151.0|179|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 421.651316 841.288078 -0.56676 -0.00023897 -2.3798 -0.0010034 -2.9465 -0.0012424 421.65280485195325 79.576 0.034561 82.871 82.85 82.884 3.295 -0.17849 0.00060587 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 14465 + 40114 24023 25352 25363 -0.13891428648560122 SCDSEDSWDGC 11 Unmodified _SCDSEDSWDGC_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MSMS UPN48_class_I_Rep_1 5 602.1820068359375 2 602.181885 1202.34922 NaN NaN NaN NaN NaN NaN NaN 49.746 1 53.271 52.771 53.771 3.5246 0 0 0 0.38417 1 10086 10086 0 0 1 + 40115 19102 25353 25364 45876 45876 -0.24386289926087557 SCEDHGKSMVF 11 Unmodified _SCEDHGKSMVF_ 0 0 0 L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|128|3|anti-sense L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|128|3|anti-sense L1P2_dup435|chr4:105426215-105428579:+|1.0095195498947356|0.1177661271863783|3.1|151.0|128|3|anti-sense MSMS UPN47_class_I_Rep_2 3 620.25830078125 2 620.260273 1238.50599 NaN NaN NaN NaN NaN NaN NaN 35.726 1 39.138 38.638 39.638 3.4114 0 0 0 0.38417 1 6620 6620 1.3295 0.63916 1 40116 13497 25354 25365 45877 45877 -0.10371960245106493 SCELQEMDEG 10 Unmodified _SCELQEMDEG_ 0 0 0 REV__L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|41|3|sense REV__L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|41|3|sense MSMS UPN48_class_I_Rep_2 6 570.7139282226562 2 570.712821 1139.41109 NaN NaN NaN NaN NaN NaN NaN 117.26 1 120.92 120.42 121.42 3.6607 0 0 0 0.53105 1 28098 28098 1.6526 0 1 + 40117 27599 25355 25366 45878 45878 -0.1530393850694054 SCEWEFTY 8 Unmodified _SCEWEFTY_ 0 0 0 L1PA7_dup11528|chr14:71064623-71067912:-|1.5918702927983752|0.1290013889498952|3.63|151.0|183|3|anti-sense L1PA7_dup11528|chr14:71064623-71067912:-|1.5918702927983752|0.1290013889498952|3.63|151.0|183|3|anti-sense L1PA7_dup11528|chr14:71064623-71067912:-|1.5918702927983752|0.1290013889498952|3.63|151.0|183|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 532.7050170898438 2 532.705125 1063.3957 0.050352 2.6823E-05 -0.9307 -0.00049579 -0.88034 -0.00046896 532.7046135835152 28.684 0.44959 28.684 28.596 29.046 0 46 32 2 0 0 0 0.82752 2 4447 4447;4532 9.3474 0 1 91787 40118 14730 25356 25367 45879;45880 45879 -0.13346437241807507 SCFCFCFWR 9 Unmodified _SCFCFCFWR_ 0 0 0 AluSp_dup34055|chr12:110398672-110398977:+|1.1438384986164265|0.1770801483004484|2.69|151.0|15|2|anti-sense AluSp_dup34055|chr12:110398672-110398977:+|1.1438384986164265|0.1770801483004484|2.69|151.0|15|2|anti-sense AluSp_dup34055|chr12:110398672-110398977:+|1.1438384986164265|0.1770801483004484|2.69|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.7351684570312 2 599.735183 1197.45581 0.38038 0.00022813 -0.14251 -8.5471E-05 0.23787 0.00014266 599.7349385260098 70.987 1.0091 74.362 73.963 74.972 3.3751 258 85 4 0 0 0 0.48643 1 17217 17217 2.0598 2.0598 1 864330 40119 234 25357 25368 45881 45881 -0.1350174138397051 SCFCFCFWR 9 Unmodified _SCFCFCFWR_ 0 0 0 AluSp_dup34055|chr12:110398672-110398977:+|1.1438384986164265|0.1770801483004484|2.69|151.0|15|2|anti-sense AluSp_dup34055|chr12:110398672-110398977:+|1.1438384986164265|0.1770801483004484|2.69|151.0|15|2|anti-sense AluSp_dup34055|chr12:110398672-110398977:+|1.1438384986164265|0.1770801483004484|2.69|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 599.735183 1197.45581 0.38038 0.00022813 -0.14251 -8.5471E-05 0.23787 0.00014266 599.7349385260098 70.987 1.0091 74.362 73.963 74.972 3.3751 -0.030489 8.0145E-05 NaN 2.0598 258 85 4 NaN NaN NaN NaN 0 NaN NaN 0 864330 40120 234 25357 25368 -0.1350174138397051 SCFILSPTREN 11 Unmodified _SCFILSPTREN_ 0 0 0 REV__HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|144|1|anti-sense REV__HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|144|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.31396484375 2 633.810987 1265.60742 0.41724 0.00026445 0.5562 0.00035253 0.97344 0.00061698 633.8112675129375 62.765 0.56177 65.934 65.578 66.14 3.1698 48 30 2 0 0 0 0.67398 1 14942 14942 1.0715 0.46996 1 90520 + 40121 23894 25358 25369 45882 45882 -0.014757655508901735 SCFLLVNLSS 10 Unmodified _SCFLLVNLSS_ 0 0 0 L1PA15_dup6745|chr13:28157020-28158595:+|9.618955366904457|0.0543797249224486|7.47|151.0|78|2|anti-sense L1PA15_dup6745|chr13:28157020-28158595:+|9.618955366904457|0.0543797249224486|7.47|151.0|78|2|anti-sense L1PA15_dup6745|chr13:28157020-28158595:+|9.618955366904457|0.0543797249224486|7.47|151.0|78|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.7824096679688 2 541.781167 1081.54778 0.42273 0.00022902 0.15149 8.2072E-05 0.57421 0.0003111 541.7811605865736 61.88 0.47366 65.248 64.948 65.421 3.3681 45 34 2 0 0 0 0.56155 1 14526 14526 2.7352 0 1 79748 40122 13969 25359 25370 45883 45883 0.01026963505751155 SCFLVIQVSS 10 Unmodified _SCFLVIQVSS_ 0 0 0 L1ME3E_dup2725|chrX:72397462-72398321:-|2.8583012694813523|0.1185975333113063|4.59|151.0|46|1|anti-sense L1ME3E_dup2725|chrX:72397462-72398321:-|2.8583012694813523|0.1185975333113063|4.59|151.0|46|1|anti-sense L1ME3E_dup2725|chrX:72397462-72398321:-|2.8583012694813523|0.1185975333113063|4.59|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_3 4 541.7799682617188 2 541.781167 1081.54778 NaN NaN NaN NaN NaN NaN NaN 62.141 1 65.308 64.808 65.808 3.1667 0 0 0 0.53105 1 14711 14711 4.5289 0.58447 1 40123 12808 25360 25371 45884 45884 0.010269635057284177 SCFRRYTF 8 Unmodified _SCFRRYTF_ 0 0 0 MLT1L_dup4945|chr6:136683185-136683625:+|1.2438415248420789|0.0566115315735028|4.46|151.0|15|3|sense MLT1L_dup4945|chr6:136683185-136683625:+|1.2438415248420789|0.0566115315735028|4.46|151.0|15|3|sense MLT1L_dup4945|chr6:136683185-136683625:+|1.2438415248420789|0.0566115315735028|4.46|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 539.9846801757812 2 540.258194 1078.50183 NaN NaN NaN NaN NaN NaN NaN 104.25 1 104.25 103.75 104.75 0 0 0 0 0.40604 1 25463 25463 2.5775 0 1 40124 16486 25361 25372 45885 45885 -0.03427636885862739 SCGFPRGR 8 Unmodified _SCGFPRGR_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.2162170410156 2 440.216329 878.418105 0.16012 7.0486E-05 -0.132 -5.8106E-05 0.028121 1.2379E-05 440.2161461375798 106.41 0.19765 106.41 106.26 106.46 0 38 24 3 0 0 0 0.82752 1 25943 25943 2.5775 0 1 263420 40125 9958 25362 25373 45886 45886 -0.025967482628857397 SCGFPRGR 8 Unmodified _SCGFPRGR_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.2163391113281 2 440.216329 878.418105 0.16 7.0436E-05 -0.22651 -9.9716E-05 -0.066512 -2.928E-05 440.21614579228134 106.53 0.41147 106.53 106.46 106.87 0 75 48 2 0 0 0 0.82752 1 25975 25975 2.5775 0 1 193120 40126 9958 25362 25373 45887 45887 -0.025967482628857397 SCGFPRGR 8 Unmodified _SCGFPRGR_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense MSMS UPN46_class_I_Rep_3 1 440.2164001464844 2 440.216329 878.418105 NaN NaN NaN NaN NaN NaN NaN 106.27 1 106.27 105.77 106.77 0 0 0 0 0.40604 1 25917 25917 2.5775 0 1 40127 9958 25362 25373 45888 45888 -0.025967482628857397 SCGFPRGR 8 Unmodified _SCGFPRGR_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|225|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.2164001464844 2 440.216329 878.418105 0.16012 7.0486E-05 -0.132 -5.8106E-05 0.028121 1.2379E-05 440.2161461375798 106.41 0.19765 106.41 106.26 106.46 0 38 24 3 0 0 0 0.72333 1 25917 25917 2.5775 0 1 263420 40128 9958 25362 25373 45889 45889 -0.025967482628857397 SCGGNSKR 8 Unmodified _SCGGNSKR_ 0 0 0 Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|55|3|sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|55|3|sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|55|3|sense MSMS UPN48_class_I_Rep_2 6 404.68951416015625 2 404.690144 807.365735 NaN NaN NaN NaN NaN NaN NaN 28.197 1 31.828 31.328 32.328 3.6311 0 0 0 0.40625 1 3850 3850 2.3027 0 1 40129 33112 25363 25374 45890 45890 -0.04565331396509009 SCGHSFSRHK 10 Unmodified _SCGHSFSRHK_ 0 0 0 L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|35|2|sense L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|35|2|sense L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|35|2|sense MSMS UPN48_class_I_Rep_2 6 573.266845703125 2 573.267081 1144.51961 NaN NaN NaN NaN NaN NaN NaN 38.252 1 41.968 41.468 42.468 3.7164 0 0 0 0.53105 1 6643 6643 1.4819 0 1 40130 14917 25364 25375 45891 45891 -0.04686921630991492 SCHLQIELY 9 Unmodified _SCHLQIELY_ 0 0 0 L1MEf_dup9736|chr15:44582559-44583196:+|2.391028257927013|0.4094371907195034|2.55|151.0|32|2|anti-sense L1MEf_dup9736|chr15:44582559-44583196:+|2.391028257927013|0.4094371907195034|2.55|151.0|32|2|anti-sense L1MEf_dup9736|chr15:44582559-44583196:+|2.391028257927013|0.4094371907195034|2.55|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.2705688476562 2 553.270967 1104.52738 0.3661 0.00020255 -0.47319 -0.0002618 -0.10709 -5.925E-05 553.2706469904507 57.293 0.7797 60.461 60.152 60.932 3.1681 101 68 2 0 0 0 0.28552 1 13266 13266 14.838 14.838 1 209640 40131 13340 25365 25376 45892 45892 -0.02070207154088166 SCHVYTYLY 9 Unmodified _SCHVYTYLY_ 0 0 0 REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|14|1|sense REV__L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|14|1|sense MSMS UPN47_class_I_Rep_2 3 574.75830078125 2 574.757692 1147.50083 NaN NaN NaN NaN NaN NaN NaN 38.691 1 42.07 41.57 42.57 3.3785 0 0 0 0.39518 1 7518 7518 1.8442 0.19162 1 + 40132 25499 25366 25377 45893 45893 -0.06701896045410649 SCIIRKLHFTW 11 Unmodified _SCIIRKLHFTW_ 0 0 0 REV__L1ME1_dup9439|chr5:36928550-36931313:-|1.0529920619011484|0.0224863314424267|5.55|151.0|188|3|anti-sense REV__L1ME1_dup9439|chr5:36928550-36931313:-|1.0529920619011484|0.0224863314424267|5.55|151.0|188|3|anti-sense MSMS UPN46_class_I_Rep_3 1 468.5936279296875 3 468.592063 1402.75436 NaN NaN NaN NaN NaN NaN NaN 56.983 1 56.983 56.483 57.483 0 0 0 0 0.38417 1 12460 12460 0.50596 0 1 + 40133 27808 25367 25378 45894 45894 0.06909376124690425 SCIKWVKISH 10 Unmodified _SCIKWVKISH_ 0 0 0 REV__THE1C-int_dup1436|chr12:59611514-59613042:-|1.2172757121598292|0.0702424633889983|4.12|151.0|14|2|sense REV__THE1C-int_dup1436|chr12:59611514-59613042:-|1.2172757121598292|0.0702424633889983|4.12|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 600.8333129882812 2 600.831526 1199.6485 NaN NaN NaN NaN NaN NaN NaN 26.107 1 29.873 29.373 30.373 3.7663 0 0 0 0.53105 1 3265 3265 1.3295 0.72803 1 + 40134 31892 25368 25379 45895 45895 0.05666040279243134 SCKKSCCSCCP 11 Unmodified _SCKKSCCSCCP_ 0 0 0 ENST00000563985.1_1_16:56642884-56643263:+|nuORF;nc|ENSG00000260549|Q93083|MT1L;nc|ENSG00000169715|P04732|MT1E;nc|ENSG00000125144|P13640-2|MT1G;ENSG00000244020|ENST00000464121|MT1HL1;ENSG00000205364|ENST00000379818|MT1M;ENSG00000205362|ENST00000290705|MT1A;ENSG00000205358|ENST00000332374|MT1H;ENSG00000198417|ENST00000334350|MT1F;ENSG00000187193|ENST00000394485|MT1X;ENSG00000125148|ENST00000245185|MT2A;CON__P67983;ENSG00000125144|ENST00000379811|MT1G;ENSG00000087250|ENST00000200691|MT3;ENST00000567300.1_1_16:56642646-56643263:+|nuORF;ENST00000566576.1_1_16:56623516-56624858:+|nuORF ENST00000563985.1_1_16:56642884-56643263:+|nuORF ENST00000563985.1_1_16:56642884-56643263:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 574.7052612304688 2 574.704908 1147.39526 0.39195 0.00022526 -0.70574 -0.00040559 -0.31379 -0.00018034 574.7047490221627 56.53 0.59365 59.702 59.435 60.028 3.1721 66 35 3 0 0 0 0.61292 2 13004 13004;13045 4.897 1.3005 1 116620 + 40135 641 25369 25380 45896;45897 45896 -0.1725396282085967 SCLECDTF 8 Unmodified _SCLECDTF_ 0 0 0 REV__ENSG00000185252.19,ZNF74,chr22,+,I1.1,20395419,20399510|80|4.7|1|intron REV__ENSG00000185252.19,ZNF74,chr22,+,I1.1,20395419,20399510|80|4.7|1|intron MSMS UPN46_class_I_Rep_3 1 459.17218017578125 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 107.28 1 107.28 106.78 107.78 0 0 0 0 0.40746 1 26168 26168 0.69038 0 1 + 40136 20849 25370 25381 45898 45898 -0.1308575503933298 SCLLYAEYASF 11 Unmodified _SCLLYAEYASF_ 0 0 0 REV__LTR54B_dup55|chr1:235676285-235676726:+|1.9672038045379456|0.0447246665438641|5.46|150.0|18|3|sense REV__LTR54B_dup55|chr1:235676285-235676726:+|1.9672038045379456|0.0447246665438641|5.46|150.0|18|3|sense MSMS UPN47_class_I_Rep_2 3 633.767822265625 2 633.789189 1265.56383 NaN NaN NaN NaN NaN NaN NaN 57.93 1 61.221 60.721 61.721 3.2912 0 0 0 0.36307 1 13372 13372 8.1555 2.4237 1 + 40137 30974 25371 25382 45899 45899 -0.05833375048041489 SCLSHYYF 8 Unmodified _SCLSHYYF_ 0 0 0 MLT1J_dup13072|chr17:8951795-8952237:+|1.2782077261992832|0.0113211142490924|6.82|150.0|19|3|sense MLT1J_dup13072|chr17:8951795-8952237:+|1.2782077261992832|0.0113211142490924|6.82|150.0|19|3|sense MLT1J_dup13072|chr17:8951795-8952237:+|1.2782077261992832|0.0113211142490924|6.82|150.0|19|3|sense MSMS UPN48_class_I_Rep_3 7 510.3033142089844 2 510.218203 1018.42185 NaN NaN NaN NaN NaN NaN NaN 115.33 1 118.97 118.47 119.47 3.6433 0 0 0 0.40738 1 27437 27437 0.79363 0 1 40138 16458 25372 25383 45900 45900 -0.08662123279702882 SCLSLLSACEC 11 Unmodified _SCLSLLSACEC_ 0 0 0 SVA_D_dup708|chr9:77760218-77761373:+|1.4755935659253656|0.1035003249557404|3.83|151.0|12|2|sense SVA_D_dup708|chr9:77760218-77761373:+|1.4755935659253656|0.1035003249557404|3.83|151.0|12|2|sense SVA_D_dup708|chr9:77760218-77761373:+|1.4755935659253656|0.1035003249557404|3.83|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 564.771728515625 2 564.740328 1127.4661 NaN NaN NaN NaN NaN NaN NaN 48.764 1 52.482 51.982 52.982 3.7175 0 0 0 0.38417 1 9779 9779 1.1933 0 1 40139 32854 25373 25384 45901 45901 -0.09253223240034458 SCNCTEFFSSN 11 Unmodified _SCNCTEFFSSN_ 0 0 0 L1MA4_dup2515|chr4:88713406-88714121:-|1.6136484312309038|0.1707006962065308|3.24|151.0|49|3|anti-sense L1MA4_dup2515|chr4:88713406-88714121:-|1.6136484312309038|0.1707006962065308|3.24|151.0|49|3|anti-sense L1MA4_dup2515|chr4:88713406-88714121:-|1.6136484312309038|0.1707006962065308|3.24|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 619.725830078125 2 619.726263 1237.43797 NaN NaN NaN NaN NaN NaN NaN 31.806 1 35.275 34.775 35.775 3.4691 0 0 0 0.38417 1 5430 5430 1.1933 0 1 40140 9667 25374 25385 45902 45902 -0.1712482989576074 SCNQREHHW 9 Unmodified _SCNQREHHW_ 0 0 0 REV__ENST00000483173.5_3_5:889166-892639:-|nuORF REV__ENST00000483173.5_3_5:889166-892639:-|nuORF MSMS UPN47_class_I_Rep_2 3 598.7529296875 2 598.754338 1195.49412 NaN NaN NaN NaN NaN NaN NaN 21.087 1 24.495 23.995 24.995 3.4074 0 0 0 0.39518 1 2299 2299 1.8442 0 1 + 40141 22581 25375 25386 45903 45903 -0.0958039615341022 SCPFADHK 8 Unmodified _SCPFADHK_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MSMS UPN48_class_I_Rep_1 5 452.7015380859375 2 452.70272 903.390887 NaN NaN NaN NaN NaN NaN NaN 82.409 1 85.984 85.484 86.484 3.5753 0 0 0 0.40604 1 19679 19679 2.5775 0 1 + 40142 19647 25376 25387 45904 45904 -0.06467276593934912 SCRAPLFLAW 10 Unmodified _SCRAPLFLAW_ 0 0 0 REV__ENST00000373316.4_1_X:77359689-77359848:+|nuORF REV__ENST00000373316.4_1_X:77359689-77359848:+|nuORF MSMS UPN48_class_I_Rep_3 7 582.3045043945312 2 582.305144 1162.59573 NaN NaN NaN NaN NaN NaN NaN 101.92 1 105.7 105.2 106.2 3.776 0 0 0 0.53105 1 24091 24091 1.8442 0 1 + 40143 21988 25377 25388 45905 45905 0.020940822164448036 SCRGFVYS 8 Unmodified _SCRGFVYS_ 0 0 0 ENST00000539115.5_1_X:24228550-24228604:+|nuORF;ENST00000383052.5_1_Y:2847091-2847145:+|nuORF ENST00000539115.5_1_X:24228550-24228604:+|nuORF ENST00000539115.5_1_X:24228550-24228604:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 459.7104187011719 2 459.710545 917.406537 0.21165 9.7297E-05 -0.18553 -8.5292E-05 0.026116 1.2006E-05 459.71048683151093 100.54 0.65285 100.54 100.06 100.71 0 168 76 3 0 0 0 0.82752 2 24452 24452;24518 4.756 0 1 2917500 40144 6504 25378 25389 45906;45907 45906 -0.05546990076891234 SCSCDSEC 8 Unmodified _SCSCDSEC_ 0 0 0 THE1C_dup8329|chr14:89511684-89512051:-|1.2458586570584993|0.0356891436393636|5.13|150.0|3|1|sense THE1C_dup8329|chr14:89511684-89512051:-|1.2458586570584993|0.0356891436393636|5.13|150.0|3|1|sense THE1C_dup8329|chr14:89511684-89512051:-|1.2458586570584993|0.0356891436393636|5.13|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 417.1084899902344 2 417.109146 832.203739 NaN NaN NaN NaN NaN NaN NaN 96.016 1 96.016 95.516 96.516 0 0 0 0 0.40746 1 23333 23333 0.69038 0 1 40145 32935 25379 25390 45908 45908 -0.21907424255971364 SCSCDSEC 8 Unmodified _SCSCDSEC_ 0 0 0 THE1C_dup8329|chr14:89511684-89512051:-|1.2458586570584993|0.0356891436393636|5.13|150.0|3|1|sense THE1C_dup8329|chr14:89511684-89512051:-|1.2458586570584993|0.0356891436393636|5.13|150.0|3|1|sense THE1C_dup8329|chr14:89511684-89512051:-|1.2458586570584993|0.0356891436393636|5.13|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 417.1086120605469 2 417.109146 832.203739 NaN NaN NaN NaN NaN NaN NaN 92.186 1 95.949 95.449 96.449 3.7629 0 0 0 0.40746 1 21944 21944 0.69038 0 1 40146 32935 25379 25390 45909 45909 -0.21907424255971364 SCSCIVIIF 9 Unmodified _SCSCIVIIF_ 0 0 0 REV__L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|53|2|anti-sense REV__L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_3 4 492.7481994628906 2 492.748282 983.48201 NaN NaN NaN NaN NaN NaN NaN 33.655 1 36.93 36.43 37.43 3.2748 0 0 0 0.39428 1 6025 6025 2.0598 0 1 + 40147 24575 25380 25391 45910 45910 -0.010391489408220878 SCSDHDHTTV 10 Unmodified _SCSDHDHTTV_ 0 0 0 AluJb_dup36388|chr5:76905831-76906129:-|1.46732512815697|0.0008170506390756|10.81|148.0|11|3|sense AluJb_dup36388|chr5:76905831-76906129:-|1.46732512815697|0.0008170506390756|10.81|148.0|11|3|sense AluJb_dup36388|chr5:76905831-76906129:-|1.46732512815697|0.0008170506390756|10.81|148.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 551.2647094726562 2 551.21692 1100.41929 NaN NaN NaN NaN NaN NaN NaN 38.825 1 42.481 41.981 42.981 3.6557 0 0 0 0.53105 1 6718 6718 1.4819 0.15237 1 40148 46 25381 25392 45911 45911 -0.1269062347532781 SCSMWMEDSP 10 Unmodified _SCSMWMEDSP_ 0 0 0 ENSG00000102908.22,NFAT5,chr16,+,I11.1,69670289,69676894|27|7.22|6|intron;ENSG00000102908.22,NFAT5,chr16,+,I11.1,69670289,69676894|27|7.22|1|intron;ENSG00000102908.22,NFAT5,chr16,+,I11.1,69670289,69676894|27|7.22|2|intron;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5 ENSG00000102908.22,NFAT5,chr16,+,I11.1,69670289,69676894|27|7.22|6|intron ENSG00000102908.22,NFAT5,chr16,+,I11.1,69670289,69676894|27|7.22|6|intron MSMS UPN48_class_I_Rep_2 6 586.7090454101562 2 586.706485 1171.39842 NaN NaN NaN NaN NaN NaN NaN 118.16 1 121.82 121.32 122.32 3.6627 0 0 0 0.53105 1 28324 28324 1.6526 1.0511 1 40149 1632 25382 25393 45912 45912 -0.18042673170839407 SCTYHYYVE 9 Unmodified _SCTYHYYVE_ 0 0 0 REV__L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|72|3|sense REV__L1M4c_dup575|chr3:60658294-60660631:-|1.9222853760531573|0.086098795092652|4.48|151.0|72|3|sense MSMS UPN46_class_I_Rep_3 1 582.73974609375 2 582.736957 1163.45936 NaN NaN NaN NaN NaN NaN NaN 42.727 1 42.727 42.227 43.227 0 0 0 0 0.38478 1 8481 8481 4.3292 1.334 1 + 40150 24603 25383 25394 45913 45913 -0.11583076804731718 SCVPSFPPSFF 11 Unmodified _SCVPSFPPSFF_ 0 0 0 L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|158|2|anti-sense L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|158|2|anti-sense L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|158|2|anti-sense MSMS UPN47_class_I_Rep_1 2 405.5558776855469 3 405.523204 1213.54778 NaN NaN NaN NaN NaN NaN NaN 48.26 1 51.942 51.442 52.442 3.6819 0 0 0 0.38417 1 10395 10395 0.40827 0 1 40151 9620 25384 25395 45914 45914 -0.05045036494288979 SCVSIAIYIF 10 Unmodified _SCVSIAIYIF_ 0 0 0 L1MEd_dup8941|chr6:156908201-156908761:-|1.6091566055780806|0.0110635719655883|7.18|151.0|31|2|anti-sense L1MEd_dup8941|chr6:156908201-156908761:-|1.6091566055780806|0.0110635719655883|7.18|151.0|31|2|anti-sense L1MEd_dup8941|chr6:156908201-156908761:-|1.6091566055780806|0.0110635719655883|7.18|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.2916259765625 2 558.293911 1114.57327 0.47766 0.00026667 -2.5548 -0.0014263 -2.0772 -0.0011597 558.2918580607914 77.49 0.15511 80.822 80.756 80.911 3.3315 18 14 2 0 0 0 0.51003 1 19223 19223 10.824 0.75 1 55936 40152 13221 25385 25396 45915 45915 0.020564380281484773 SCWKNFLTY 9 Unmodified _SCWKNFLTY_ 0 0 0 REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 581.7923583984375 2 581.273509 1160.53247 0.35523 0.00020648 -0.41134 -0.0002391 -0.056115 -3.2618E-05 581.2723737868877 71.05 0.28416 74.425 74.371 74.655 3.3751 36 27 2 0 0 0 0.118 1 17293 17293 10.074 1.4806 1 198780 + 40153 30321 25386 25397 45916 45916 -0.04137903291461953 SCWKNFLTY 9 Unmodified _SCWKNFLTY_ 0 0 0 REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|84|2|sense MSMS UPN47_class_I_Rep_3 4 581.2767944335938 2 581.273509 1160.53247 NaN NaN NaN NaN NaN NaN NaN 71.583 1 74.802 74.302 75.302 3.2188 0 0 0 0.31276 1 17572 17572 10.074 0.72649 1 + 40154 30321 25386 25397 45917 45917 -0.04137903291461953 SCYDLLFLF 9 Unmodified _SCYDLLFLF_ 0 0 0 L1M6_dup5036|chr17:10047099-10047877:+|1.0022529948077|0.0051979138604066|7.59|151.0|32|2|anti-sense L1M6_dup5036|chr17:10047099-10047877:+|1.0022529948077|0.0051979138604066|7.59|151.0|32|2|anti-sense L1M6_dup5036|chr17:10047099-10047877:+|1.0022529948077|0.0051979138604066|7.59|151.0|32|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.8154907226562 2 560.772811 1119.53107 NaN NaN NaN NaN NaN NaN NaN 71.284 1 74.574 74.074 75.074 3.2899 0 0 0 0.39428 1 17412 17412 2.0598 0.57785 1 40155 9222 25387 25398 45918 45918 -0.02391537380231057 SCYHLFPD 8 Unmodified _SCYHLFPD_ 0 0 0 ENST00000487639.1_1_2:113588742-113591137:-|nuORF ENST00000487639.1_1_2:113588742-113591137:-|nuORF ENST00000487639.1_1_2:113588742-113591137:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.2088317871094 2 491.210378 980.406203 NaN NaN NaN NaN NaN NaN NaN 111.99 1 115.51 115.01 116.01 3.5226 0 0 0 0.40746 1 27279 27279 0.69038 0 1 40156 7045 25388 25399 45919 45919 -0.08478409796748565 SCYLYYIE 8 Unmodified _SCYLYYIE_ 0 0 0 L1MD_dup7522|chr16:23938824-23940404:+|5.197374972609589|0.0112795836861183|8.85|151.0|70|1|anti-sense L1MD_dup7522|chr16:23938824-23940404:+|5.197374972609589|0.0112795836861183|8.85|151.0|70|1|anti-sense L1MD_dup7522|chr16:23938824-23940404:+|5.197374972609589|0.0112795836861183|8.85|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2335205078125 2 527.233519 1052.45248 NaN NaN NaN NaN NaN NaN NaN 68.52 1 72.029 71.529 72.529 3.5094 0 0 0 0.388 1 15716 15716 12.532 0 1 40157 11892 25389 25400 45920 45920 -0.07164389685317474 SCYTFYCIY 9 Unmodified _SCYTFYCIY_ 0 0 0 REV__ENST00000477344.1_1_3:57643424-57646547:-|nuORF REV__ENST00000477344.1_1_3:57643424-57646547:-|nuORF MSMS UPN47_class_I_Rep_2 3 581.7301635742188 2 581.732828 1161.4511 NaN NaN NaN NaN NaN NaN NaN 63.431 1 66.686 66.186 67.186 3.2558 0 0 0 0.35339 1 15048 15048 7.9102 0.62092 1 + 40158 22544 25390 25401 45921 45921 -0.12316347045725706 SDCCACSE 8 Unmodified _SDCCACSE_ 0 0 0 L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|382|3|anti-sense;L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|319|2|anti-sense L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|382|3|anti-sense L1PA7_dup1530|chr2:159355695-159362150:+|1.5732256901780932|0.0858558310627689|4.2|151.0|382|3|anti-sense MSMS UPN46_class_I_Rep_3 1 409.1107482910156 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 104.14 1 104.14 103.64 104.64 0 0 0 0 0.40746 1 25429 25429 0.69038 0 1 40159 14768 25391 25402 45922 45922 -0.20663120393351164 SDCDSNVRRR 10 Unmodified _SDCDSNVRRR_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS UPN47_class_I_Rep_1 2 604.2817993164062 2 604.28346 1206.55237 NaN NaN NaN NaN NaN NaN NaN 25.153 1 28.902 28.402 29.402 3.7495 0 0 0 0.53105 1 3405 3405 1.4819 0.8804 1 + 40160 19550 25392 25403 45923 45923 -0.04264759298803256 SDCDSNVRRR 10 Unmodified _SDCDSNVRRR_ 0 0 0 REV__ENSG00000146834|ENST00000310512|MEPCE REV__ENSG00000146834|ENST00000310512|MEPCE MSMS UPN48_class_I_Rep_2 6 604.2811889648438 2 604.28346 1206.55237 NaN NaN NaN NaN NaN NaN NaN 26.761 1 30.393 29.893 30.893 3.6311 0 0 0 0.53105 1 3453 3453 0.40072 0.40072 1 + 40161 19550 25392 25403 45924 45924 -0.04264759298803256 SDCSCGCCWCP 11 Unmodified _SDCSCGCCWCP_ 0 0 0 ENST00000222584.7_1_7:21470186-21470375:+|nuORF ENST00000222584.7_1_7:21470186-21470375:+|nuORF ENST00000222584.7_1_7:21470186-21470375:+|nuORF MSMS UPN46_class_I_Rep_3 1 582.1577758789062 2 582.15779 1162.30103 NaN NaN NaN NaN NaN NaN NaN 74.623 1 74.623 74.123 75.123 0 0 0 0 0.38417 1 17318 17318 0 0 1 40162 5873 25393 25404 45925 45925 -0.27363101642981746 SDCSSEDFQY 10 Unmodified _SDCSSEDFQY_ 0 0 0 L1MA3_dup8054|chr17:17339027-17340514:-|1.0199725552750492|0.0238156202309306|5.42|150.0|75|2|anti-sense L1MA3_dup8054|chr17:17339027-17340514:-|1.0199725552750492|0.0238156202309306|5.42|150.0|75|2|anti-sense L1MA3_dup8054|chr17:17339027-17340514:-|1.0199725552750492|0.0238156202309306|5.42|150.0|75|2|anti-sense MSMS UPN47_class_I_Rep_2 3 590.7086181640625 2 590.708593 1179.40263 NaN NaN NaN NaN NaN NaN NaN 32.662 1 36.116 35.616 36.616 3.4547 0 0 0 0.53105 1 5687 5687 1.3295 0 1 40163 9634 25394 25405 45926 45926 -0.17989169151906026 SDDGSDSDAD 10 Unmodified _SDDGSDSDAD_ 0 0 0 REV__nc|ENSG00000054523|O60333-3|KIF1B REV__nc|ENSG00000054523|O60333-3|KIF1B MULTI-MSMS UPN46_class_I_Rep_3 1 492.1565856933594 2 492.157248 982.299943 0.18192 8.9532E-05 -0.63304 -0.00031156 -0.45113 -0.00022202 492.15681663809494 36.486 0.36033 36.486 36.282 36.643 0 44 29 2 0 0 0 0.56486 1 6760 6760 0.40072 0 1 121540 + 40164 31936 25395 25406 45927 45927 -0.1919153861903169 SDDLHNSNTME 11 Unmodified _SDDLHNSNTME_ 0 0 0 L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|73|3|sense L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|73|3|sense L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|73|3|sense MSMS UPN46_class_I_Rep_3 1 631.7517700195312 2 631.751324 1261.48809 NaN NaN NaN NaN NaN NaN NaN 47.606 1 47.606 47.106 48.106 0 0 0 0 0.38417 1 9859 9859 1.3295 0 1 40165 15277 25396 25407 45928 45928 -0.1321900396624187 SDEKVNKLEIL 11 Unmodified _SDEKVNKLEIL_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS UPN46_class_I_Rep_3 1 644.3604736328125 2 644.361367 1286.70818 0.75394 0.00048581 0.16124 0.00010389 0.91518 0.00058971 644.3620757805608 107.53 0.17633 107.53 107.44 107.61 0 36 23 2 0 0 0 0.61292 1 26240 26240 4.897 1.3005 1 22239000 + 40166 17852 25397 25408 45929 45929 0.0762958970362888 SDEKVNKLEIL 11 Unmodified _SDEKVNKLEIL_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 644.361367 1286.70818 0.58241 0.00037529 -0.059298 -3.821E-05 0.52312 0.00033708 644.3616879197798 103.39 0.038307 107.17 107.14 107.17 3.7788 -0.1551 0.00015016 NaN 4.897 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 946190 + 40167 17852 25397 25408 0.0762958970362888 SDEKVNKLEIL 11 Unmodified _SDEKVNKLEIL_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 644.361367 1286.70818 0.5152 0.00033198 -0.38221 -0.00024628 0.13299 8.5693E-05 644.3618253381343 103.69 0.32999 107.21 106.96 107.29 3.5205 -0.11171 -0.00026599 NaN 4.897 107 49 4 NaN NaN NaN NaN 0 NaN NaN 0 24594000 + 40168 17852 25397 25408 0.0762958970362888 SDEKVNKLEIL 11 Unmodified _SDEKVNKLEIL_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 644.361367 1286.70818 0.50054 0.00032253 0.58053 0.00037407 1.0811 0.0006966 644.3620891647508 103.68 0.10483 107.38 107.3 107.4 3.6991 0.060205 0.00097472 NaN 4.897 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 29104000 + 40169 17852 25397 25408 0.0762958970362888 SDESYKKH 8 Unmodified _SDESYKKH_ 0 0 0 REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 497.23541259765625 2 497.235439 992.456324 -0.15238 -7.5768E-05 0.19871 9.8807E-05 0.046333 2.3038E-05 497.23545382046467 23.1 0.61807 26.545 26.239 26.857 3.4447 105 55 3 0 0 0 0.82752 1 2909 2909 2.3027 0 1 116360 + 40170 18179 25398 25409 45930 45930 -0.040205838672363825 SDFEQNGTMG 10 Unmodified _SDFEQNGTMG_ 0 0 0 ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000116039|ENST00000234396|ATP6V1B1 MULTI-SECPEP UPN47_class_I_Rep_1 2 543.7633056640625 2 543.213846 1084.41314 0.37721 0.0002049 -1.9648 -0.0010673 -1.5876 -0.00086238 543.2127184983887 67.367 0.083923 70.728 70.668 70.752 3.3611 9 6 2 0 0 0 0.84575 1 16195 16195 1.3295 0.5359 1 33382 40171 2157 25399 25410 45931 45931 -0.12569141706831033 SDFKNFHLFC 10 Unmodified _SDFKNFHLFC_ 0 0 0 L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|304|2|anti-sense L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|304|2|anti-sense L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|304|2|anti-sense MSMS UPN48_class_I_Rep_2 6 629.288818359375 2 629.289691 1256.56483 NaN NaN NaN NaN NaN NaN NaN 32.043 1 35.684 35.184 36.184 3.641 0 0 0 0.53105 1 4900 4900 5.7319 0 1 40172 14490 25400 25411 45932 45932 -0.053191158884601464 SDGGNEISNY 10 Unmodified _SDGGNEISNY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN48_class_I_Rep_1 5 528.71923828125 2 528.217443 1054.42033 0.43511 0.00022983 0.75224 0.00039735 1.1874 0.00062718 528.2177222924762 58.527 0.52716 62.014 61.807 62.334 3.487 59 33 2 0 0 0 0.51021 1 12829 12829 10.8 2.0541 1 106790 40173 3707 25401 25412 45933 45933 -0.10470085834754173 SDGGNEISNY 10 Unmodified _SDGGNEISNY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN48_class_I_Rep_3 7 528.2180786132812 2 528.217443 1054.42033 0.41778 0.00022068 0.68548 0.00036209 1.1033 0.00058276 528.2177914125457 58.399 0.66945 61.922 61.651 62.32 3.5231 63 44 2 0 0 0 0.53414 1 12653 12653 7.609 0.88579 1 144360 40174 3707 25401 25412 45934 45934 -0.10470085834754173 SDGGNEISNY 10 Unmodified _SDGGNEISNY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH UPN48_class_I_Rep_2 6 2 528.217443 1054.42033 0.50027 0.00026425 0.67274 0.00035535 1.173 0.00061961 528.2177462283904 58.524 0.60781 62.023 61.755 62.363 3.4987 0.036638 -2.7933E-05 NaN 10.8 53 33 2 NaN NaN NaN NaN 0 NaN NaN 0 147710 40175 3707 25401 25412 -0.10470085834754173 SDGLAHLDNL 10 Unmodified _SDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_1 2 527.7618408203125 2 527.76182 1053.50909 0.17559 9.2672E-05 -0.19812 -0.00010456 -0.022526 -1.1888E-05 527.761638720043 49.601 0.66631 53.261 53.03 53.697 3.6592 91 41 3 0 0 0 0.20963 3 10818 10767;10818;10860 59.052 24.12 1 312910 + 40176 5729 25402 25413 45935;45936;45937 45936 -0.015526258044474162 SDGLAHLDNL 10 Unmodified _SDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_2 3 527.7620849609375 2 527.76182 1053.50909 0.15316 8.0834E-05 0.0071615 3.7796E-06 0.16032 8.4613E-05 527.7617069585499 49.969 0.90665 53.312 52.986 53.893 3.3431 109 49 3 0 0 0 0.12241 4 10922 10882;10922;10967;11013 75.571 22.167 1 266480 + 40177 5729 25402 25413 45938;45939;45940;45941 45939 -0.015526258044474162 SDGLAHLDNL 10 Unmodified _SDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN47_class_I_Rep_3 4 527.76171875 2 527.76182 1053.50909 0.4092 0.00021596 -0.32764 -0.00017292 0.081554 4.3041E-05 527.7615785981648 50.032 0.75331 53.258 52.957 53.71 3.2262 98 41 3 0 0 0 0.16935 3 11019 10980;11019;11073 63.227 34.733 1 293440 + 40178 5729 25402 25413 45942;45943;45944 45943 -0.015526258044474162 SDGLAHLDNL 10 Unmodified _SDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 527.761962890625 2 527.76182 1053.50909 0.30778 0.00016244 -0.015822 -8.35E-06 0.29196 0.00015409 527.7617252678873 49.897 0.80825 53.421 53.143 53.951 3.5246 117 51 3 0 0 0 0.12806 4 10141 10100;10141;10182;10228 80.676 22.954 1 497840 + 40179 5729 25402 25413 45945;45946;45947;45948 45946 -0.015526258044474162 SDGLAHLDNL 10 Unmodified _SDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_2 6 527.7617797851562 2 527.76182 1053.50909 0.35892 0.00018942 -0.0085967 -4.537E-06 0.35032 0.00018488 527.7617685200071 49.731 0.78526 53.425 53.092 53.877 3.6946 116 51 3 0 0 0 0.1485 4 10074 10031;10074;10114;10167 88.364 26.762 1 612790 + 40180 5729 25402 25413 45949;45950;45951;45952 45950 -0.015526258044474162 SDGLAHLDNL 10 Unmodified _SDGLAHLDNL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 527.761962890625 2 527.76182 1053.50909 0.36325 0.00019171 -0.011755 -6.2036E-06 0.35149 0.0001855 527.7617333708889 49.955 0.67293 53.576 53.171 53.844 3.621 103 44 3 0 0 0 1.7559E-06 3 10053 10009;10053;10095 139.78 40.027 1 540220 + 40181 5729 25402 25413 45953;45954;45955 45954 -0.015526258044474162 SDHDDAFLSIM 11 Unmodified _SDHDDAFLSIM_ 0 0 0 nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC nc|ENSG00000079432|Q96RK0-2|CIC nc|ENSG00000079432|Q96RK0-2|CIC MSMS UPN46_class_I_Rep_3 1 625.7739868164062 2 625.771528 1249.5285 NaN NaN NaN NaN NaN NaN NaN 60.445 1 60.445 59.945 60.945 0 0 0 0 0.38417 1 13409 13409 3.2813 0.97858 1 40182 1190 25403 25414 45956 45956 -0.08628037575840608 SDICIANPALF 11 Unmodified _SDICIANPALF_ 0 0 0 L1MB4_dup7697|chr17:30976304-30977367:-|2.2171273772082376|0.2080889481043584|3.41|151.0|45|1|anti-sense L1MB4_dup7697|chr17:30976304-30977367:-|2.2171273772082376|0.2080889481043584|3.41|151.0|45|1|anti-sense L1MB4_dup7697|chr17:30976304-30977367:-|2.2171273772082376|0.2080889481043584|3.41|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.2916259765625 2 582.291899 1162.56925 0.53499 0.00031152 0.56695 0.00033013 1.1019 0.00064165 582.2921042835295 77.133 0.68399 80.734 80.507 81.191 3.6016 98 56 2 0 0 0 0.65821 1 18143 18143 2.4985 0.19575 1 166160 40183 10583 25404 25415 45957 45957 -0.00553651465565963 SDIDMLSTL 9 Unmodified _SDIDMLSTL_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MULTI-MSMS UPN47_class_I_Rep_3 4 497.7425842285156 2 497.741708 993.468863 0.1229 6.1171E-05 0.75839 0.00037748 0.88129 0.00043866 497.7418541732199 58.681 0.50036 61.847 61.682 62.182 3.1658 38 31 2 0 0 0 0.30034 1 13673 13673 13.906 0 1 41465 + 40184 19666 25405 25416 45958 45958 -0.02813308519205293 SDKDPVERGII 11 Unmodified _SDKDPVERGII_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS UPN47_class_I_Rep_1 2 614.8302001953125 2 614.830234 1227.64592 0.38759 0.0002383 -0.073539 -4.5214E-05 0.31405 0.00019309 614.8301013563266 66.039 0.70915 69.397 69.119 69.828 3.3576 77 47 2 0 0 0 0.40526 1 15789 15789 10.151 0 1 277480 40185 934 25406 25417 45959 45959 0.04119863355299458 SDKKLFKV 8 Unmodified _SDKKLFKV_ 0 0 0 REV__ENST00000354179.8_2_5:176638695-176638818:+|nuORF REV__ENST00000354179.8_2_5:176638695-176638818:+|nuORF MSMS UPN47_class_I_Rep_2 3 482.79473876953125 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 119.5 1 122.98 122.48 123.48 3.4793 0 0 0 0.40746 1 29274 29274 0.69038 0 1 + 40186 21855 25407 25418 45960 45960 0.09207234828272703 SDKNCSRSPIV 11 Unmodified _SDKNCSRSPIV_ 0 0 0 ENSG00000268104|ENST00000598581|SLC6A14 ENSG00000268104|ENST00000598581|SLC6A14 ENSG00000268104|ENST00000598581|SLC6A14 MULTI-MSMS UPN48_class_I_Rep_3 7 603.3026123046875 2 603.300787 1204.58702 0.44195 0.00026663 -0.041707 -2.5162E-05 0.40024 0.00024146 603.3008343655317 30.545 0.78378 34.259 33.959 34.743 3.7146 193 95 3 0 0 0 0.66277 1 4354 4354 2.086 0 1 336380 40187 5805 25408 25419 45961 45961 -0.007089362107080888 SDKRKKRHL 9 Unmodified _SDKRKKRHL_ 0 0 0 L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|21|2|sense L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|21|2|sense L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|21|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 584.8583984375 2 584.357088 1166.69962 0.42593 0.00024889 -0.92673 -0.00054154 -0.5008 -0.00029265 584.3563495555875 83.374 0.10834 86.961 86.903 87.012 3.5871 18 13 2 0 0 0 0.12532 1 19946 19946 0.52476 0.17413 1 74410 40188 13895 25409 25420 45962 45962 0.122941253683166 SDLFDCLLPD 10 Unmodified _SDLFDCLLPD_ 0 0 0 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17 MULTI-SECPEP UPN47_class_I_Rep_1 2 569.2587280273438 2 569.260265 1136.50598 0.36178 0.00020595 0.61158 0.00034815 0.97337 0.0005541 569.2582342001807 73.052 0.79721 76.432 76.126 76.923 3.3799 130 57 4 0 0 0 0.84575 1 17925 17925 6.2058 0 1 152390 + 40189 18274 25410 25421 45963 45963 -0.056816369734633554 SDLRQGLYPD 10 Unmodified _SDLRQGLYPD_ 0 0 0 REV__ENSG00000148408|ENST00000371372|CACNA1B REV__ENSG00000148408|ENST00000371372|CACNA1B MSMS UPN48_class_I_Rep_1 5 582.2872314453125 2 582.288202 1162.56185 NaN NaN NaN NaN NaN NaN NaN 39.927 1 43.432 42.932 43.932 3.5048 0 0 0 0.53105 1 7108 7108 1.1933 0.12188 1 + 40190 19589 25411 25422 45964 45964 -0.01292667741608966 SDLRRRAFS 9 Unmodified _SDLRRRAFS_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|121|2|anti-sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|121|2|anti-sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|121|2|anti-sense MSMS UPN48_class_I_Rep_3 7 554.3060302734375 2 554.304521 1106.59449 NaN NaN NaN NaN NaN NaN NaN 66.311 1 69.819 69.319 70.319 3.5077 0 0 0 0.38916 1 15051 15051 3.2813 0 1 40191 9640 25412 25423 45965 45965 0.04545584171910377 SDLVKFNIKAI 11 Unmodified _SDLVKFNIKAI_ 0 0 0 REV__ENSG00000075223|ENST00000265361|SEMA3C REV__ENSG00000075223|ENST00000265361|SEMA3C MSMS UPN48_class_I_Rep_2 6 624.3729248046875 2 624.371538 1246.72852 NaN NaN NaN NaN NaN NaN NaN 91.783 1 95.546 95.046 96.046 3.7629 0 0 0 0.38417 1 21854 21854 2.4985 1.0166 1 + 40192 17851 25413 25424 45966 45966 0.11502805154077578 SDLYVSPYSS 10 Unmodified _SDLYVSPYSS_ 0 0 0 L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|104|3|anti-sense L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|104|3|anti-sense L1MB8_dup12997|chr14:91052900-91054354:+|1.962540252790885|0.0107130205449948|7.52|151.0|104|3|anti-sense MSMS UPN47_class_I_Rep_3 4 558.8636474609375 2 559.256037 1116.49752 NaN NaN NaN NaN NaN NaN NaN 85.83 1 89.202 88.702 89.702 3.3716 0 0 0 0.53105 1 21506 21506 3.2813 0 1 40193 10933 25414 25425 45967 45967 -0.056068676184168 SDMCDTDGD 9 Unmodified _SDMCDTDGD_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS UPN47_class_I_Rep_2 3 479.6429443359375 2 479.641865 957.269177 NaN NaN NaN NaN NaN NaN NaN 41.169 1 44.535 44.035 45.035 3.3655 0 0 0 0.4007 1 8270 8270 0.52476 0 1 + 40194 18779 25415 25426 45968 45968 -0.21116731529275512 SDMGVPASPIY 11 Unmodified _SDMGVPASPIY_ 0 0 0 REV__L1PA12_dup225|chr2:97490962-97491750:+|1.9628461919844664|0.3225554413257143|2.61|151.0|35|3|anti-sense REV__L1PA12_dup225|chr2:97490962-97491750:+|1.9628461919844664|0.3225554413257143|2.61|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_2 3 568.7659912109375 2 568.768257 1135.52196 NaN NaN NaN NaN NaN NaN NaN 33.054 1 36.508 36.008 37.008 3.4547 0 0 0 0.38417 1 5806 5806 2.9952 0.69251 1 + 40195 29062 25416 25427 45969 45969 -0.040379307365356 SDNRGGYG 8 Unmodified _SDNRGGYG_ 0 0 0 REV__ENSG00000145012|ENST00000617246|LPP REV__ENSG00000145012|ENST00000617246|LPP MSMS UPN47_class_I_Rep_2 3 412.7645263671875 2 413.177924 824.341294 NaN NaN NaN NaN NaN NaN NaN 83.438 1 86.85 86.35 87.35 3.4116 0 0 0 0.40738 1 20799 20799 0.79363 0 1 + 40196 19502 25417 25428 45970 45970 -0.0779026827837015 SDPFLSGPLFG 11 Unmodified _SDPFLSGPLFG_ 0 0 0 REV__ENST00000574081.5_2_17:5112638-5112815:-|nuORF REV__ENST00000574081.5_2_17:5112638-5112815:-|nuORF MSMS UPN48_class_I_Rep_3 7 568.7838745117188 2 568.784764 1135.55498 NaN NaN NaN NaN NaN NaN NaN 30.268 1 33.982 33.482 34.482 3.7146 0 0 0 0.38417 1 4345 4345 2.9952 0 1 + 40197 23102 25418 25429 45971 45971 -0.0073798062219339045 SDRKRRRVR 9 Unmodified _SDRKRRRVR_ 0 0 0 REV__LTR44_dup54|chr2:230520656-230521096:-|2.152790593949053|0.0557227167981436|5.27|151.0|21|2|anti-sense REV__LTR44_dup54|chr2:230520656-230521096:-|2.152790593949053|0.0557227167981436|5.27|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 614.8762817382812 2 614.876511 1227.73847 NaN NaN NaN NaN NaN NaN NaN 73.39 1 76.871 76.371 77.371 3.4812 0 0 0 0.4007 1 17290 17290 0.52476 0 1 + 40198 30927 25419 25430 45972 45972 0.13370850722685645 SDRQTRVMF 9 Unmodified _SDRQTRVMF_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|71|1|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|71|1|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_3 7 570.2675170898438 2 570.28494 1138.55533 NaN NaN NaN NaN NaN NaN NaN 77.169 1 80.77 80.27 81.27 3.6016 0 0 0 0.38639 1 18212 18212 3.9444 0.3479 1 40199 7741 25420 25431 45973 45973 -0.008408841739765194 SDRSDRQIQ 9 Unmodified _SDRSDRQIQ_ 0 0 0 REV__MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|15|1|anti-sense REV__MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 552.7584228515625 2 552.773251 1103.53195 NaN NaN NaN NaN NaN NaN NaN 115.9 1 119.5 119 120 3.5943 0 0 0 0.39518 1 28691 28691 1.8442 0.36234 1 + 40200 31451 25421 25432 45974 45974 -0.015676066869446004 SDRWCVPIRQ 10 Unmodified _SDRWCVPIRQ_ 0 0 0 REV__ENST00000388942.7_1_15:76448950-76463338:+|nuORF REV__ENST00000388942.7_1_15:76448950-76463338:+|nuORF MSMS UPN47_class_I_Rep_2 3 630.3173217773438 2 630.319314 1258.62407 NaN NaN NaN NaN NaN NaN NaN 62.371 1 65.631 65.131 66.131 3.2594 0 0 0 0.53105 1 14724 14724 2.7352 0.89096 1 + 40201 22074 25422 25433 45975 45975 0.005107801257281608 SDTDDCTYSFT 11 Unmodified _SDTDDCTYSFT_ 0 0 0 REV__nc|ENSG00000146414|Q149N8-5|SHPRH REV__nc|ENSG00000146414|Q149N8-5|SHPRH MSMS UPN47_class_I_Rep_2 3 627.7257080078125 2 627.726983 1253.43941 NaN NaN NaN NaN NaN NaN NaN 115.89 1 119.38 118.88 119.88 3.4965 0 0 0 0.38417 1 28273 28273 1.3295 0.63916 1 + 40202 32006 25423 25434 45976 45976 -0.1771691732601539 SDVHYVPY 8 Unmodified _SDVHYVPY_ 0 0 0 REV__L1PA11_dup2007|chr8:70337678-70341107:+|1.8143795384436177|0.0223272870306476|6.34|150.0|142|2|anti-sense REV__L1PA11_dup2007|chr8:70337678-70341107:+|1.8143795384436177|0.0223272870306476|6.34|150.0|142|2|anti-sense MSMS UPN47_class_I_Rep_3 4 490.2218933105469 2 490.229625 978.444697 NaN NaN NaN NaN NaN NaN NaN 32.659 1 35.945 35.445 36.445 3.2867 0 0 0 0.40404 1 5728 5728 5.2307 0.47466 1 + 40203 29010 25424 25435 45977 45977 -0.0453878089057298 SDVLILHRFC 10 Unmodified _SDVLILHRFC_ 0 0 0 REV__L1MB1_dup3103|chr9:41139688-41140136:+|1.602063633528602|0.0824572425120342|4.28|150.0|28|2|anti-sense REV__L1MB1_dup3103|chr9:41139688-41140136:+|1.602063633528602|0.0824572425120342|4.28|150.0|28|2|anti-sense MSMS UPN48_class_I_Rep_3 7 601.8197631835938 2 601.821158 1201.62776 NaN NaN NaN NaN NaN NaN NaN 24.605 1 28.374 27.874 28.874 3.769 0 0 0 0.53105 1 2873 2873 1.4819 0 1 + 40204 25658 25425 25436 45978 45978 0.03501449899590625 SDVRVIVR 8 Unmodified _SDVRVIVR_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS UPN48_class_I_Rep_3 7 472.2876892089844 2 472.287808 942.561064 0.20729 9.7902E-05 0.056952 2.6898E-05 0.26424 0.0001248 472.28794360839845 108.22 0.3933 111.9 111.67 112.06 3.6813 80 41 3 0 0 0 0.82752 1 25541 25541 0.69038 0 1 3102300 40205 5238 25426 25437 45979 45979 0.08748582400005489 SDYEYERF 8 Unmodified _SDYEYERF_ 0 0 0 REV__FLT3|S584insSSDNEYFYVDFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion REV__FLT3|S584insSSDNEYFYVDFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion MSMS UPN48_class_I_Rep_2 6 554.7523193359375 2 554.732729 1107.4509 NaN NaN NaN NaN NaN NaN NaN 85.793 1 89.499 88.999 89.999 3.7058 0 0 0 0.39996 1 20416 20416 7.9102 0 1 + 40206 23322 25427 25438 45980 45980 -0.09852307449705222 SDYICDTMAW 10 Unmodified _SDYICDTMAW_ 0 0 0 REV__Tigger3a_dup2006|chr6:4060088-4060291:-|1.9711548896808049|0.3493915030396354|2.5|151.0|3|2|sense REV__Tigger3a_dup2006|chr6:4060088-4060291:-|1.9711548896808049|0.3493915030396354|2.5|151.0|3|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 602.7357788085938 2 602.736099 1203.45765 0.49397 0.00029773 -0.69282 -0.00041759 -0.19885 -0.00011985 602.7356359568878 30.859 0.60665 34.494 34.289 34.895 3.6351 108 68 2 0 0 0 0.56309 1 4603 4603 1.6526 0.17072 1 179430 + 40207 32710 25428 25439 45981 45981 -0.13594453885002622 SDYPPLGRF 9 Unmodified _SDYPPLGRF_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_1 2 526.2635498046875 2 526.263999 1050.51345 0.24462 0.00012874 -0.23753 -0.000125 0.0070913 3.7319E-06 526.263757254778 52.708 1.0777 56.266 55.904 56.982 3.5585 163 70 3 0 0 0 0.021334 8 11764 11681;11721;11764;11799;11842;11882;11924;11939 62.573 51.749 1 530700 40208 3732 25429 25440 45982;45983;45984;45985;45986;45987;45988;45989 45984 -0.0097911659086094 SDYPPLGRF 9 Unmodified _SDYPPLGRF_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MSMS UPN47_class_I_Rep_1 2 526.2646484375 2 526.263999 1050.51345 NaN NaN NaN NaN NaN NaN NaN 53.462 1 56.99 56.49 57.49 3.5278 0 0 0 0.38639 1 11980 11980 3.9444 0 1 40209 3732 25429 25440 45990 45990 -0.0097911659086094 SDYPPLGRF 9 Unmodified _SDYPPLGRF_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_2 3 526.2639770507812 2 526.263999 1050.51345 0.19032 0.00010016 -0.17802 -9.3688E-05 0.0123 6.4733E-06 526.2638327099519 53.042 1.1851 56.369 55.887 57.072 3.3266 145 79 2 0 0 0 0.011285 8 11874 11747;11781;11828;11874;11917;11957;11998;12034 69.105 49.388 1 477420 40210 3732 25429 25440 45991;45992;45993;45994;45995;45996;45997;45998 45994 -0.0097911659086094 SDYPPLGRF 9 Unmodified _SDYPPLGRF_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_3 4 526.2640380859375 2 526.263999 1050.51345 0.40089 0.00021097 -0.13816 -7.2709E-05 0.26273 0.00013826 526.2637309845974 53.182 1.1118 56.377 55.949 57.061 3.1948 182 66 4 0 0 0 0.0059033 6 11976 11890;11932;11976;12019;12060;12103 81.89 58.742 1 559720 40211 3732 25429 25440 45999;46000;46001;46002;46003;46004 46001 -0.0097911659086094 SDYVPTGPPGP 11 Unmodified _SDYVPTGPPGP_ 0 0 0 REV__ENST00000459895.1_1_21:46913462-46917625:+|nuORF REV__ENST00000459895.1_1_21:46913462-46917625:+|nuORF MSMS UPN47_class_I_Rep_1 2 543.7599487304688 2 543.758746 1085.50294 NaN NaN NaN NaN NaN NaN NaN 36.751 1 40.42 39.92 40.92 3.6692 0 0 0 0.38417 1 6895 6895 1.3295 0.5359 1 + 40212 20769 25430 25441 46005 46005 -0.03639144035946629 SEADFSIHF 9 Unmodified _SEADFSIHF_ 0 0 0 ENST00000439296.2_1_1:243289753-243299542:-|nuORF;nc|ENSG00000154608|Q96L14|CEP170P1;ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170 ENST00000439296.2_1_1:243289753-243299542:-|nuORF ENST00000439296.2_1_1:243289753-243299542:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.7377319335938 2 526.737814 1051.46108 0.34418 0.00018129 0.048156 2.5365E-05 0.39233 0.00020666 526.7376735008037 61.254 0.42023 64.635 64.442 64.862 3.3815 50 28 2 0 0 0 0.1249 1 14318 14318 29.082 8.628 1 65044 40213 3319 25431 25442 46006 46006 -0.06259699724478196 SEADFSIHF 9 Unmodified _SEADFSIHF_ 0 0 0 ENST00000439296.2_1_1:243289753-243299542:-|nuORF;nc|ENSG00000154608|Q96L14|CEP170P1;ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170 ENST00000439296.2_1_1:243289753-243299542:-|nuORF ENST00000439296.2_1_1:243289753-243299542:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 526.7379150390625 2 526.737814 1051.46108 0.14917 7.8575E-05 -0.012525 -6.5976E-06 0.13665 7.1978E-05 526.737820376383 61.416 0.51246 64.675 64.523 65.036 3.2594 34 29 2 0 0 0 0.090251 1 14430 14430 36.127 15.673 1 85623 40214 3319 25431 25442 46007 46007 -0.06259699724478196 SEADFSIHF 9 Unmodified _SEADFSIHF_ 0 0 0 ENST00000439296.2_1_1:243289753-243299542:-|nuORF;nc|ENSG00000154608|Q96L14|CEP170P1;ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170 ENST00000439296.2_1_1:243289753-243299542:-|nuORF ENST00000439296.2_1_1:243289753-243299542:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 526.7379150390625 2 526.737814 1051.46108 0.30364 0.00015994 -0.17024 -8.9673E-05 0.1334 7.0265E-05 526.7377473628417 61.544 0.40674 64.711 64.556 64.963 3.1667 39 29 2 0 0 0 0.20276 2 14550 14505;14550 20.454 8.8133 1 73511 40215 3319 25431 25442 46008;46009 46009 -0.06259699724478196 SEAEAEELLE 10 Unmodified _SEAEAEELLE_ 0 0 0 AluSx4_dup8893|chr16:30244196-30244479:+|1.940587555658868|0.2190278688344462|3.15|150.0|7|3|sense;AluSx4_dup8885|chr16:29504227-29504510:+|2.2922186729459777|0.1270437275272238|4.17|151.0|7|3|sense;AluSx4_dup8824|chr16:22514903-22515186:-|1.203019036422855|0.2356142015740401|2.35|142.0|8|3|sense;AluSx4_dup8820|chr16:21856000-21856283:+|4.6953378222389|0.455090867383112|3.37|150.0|8|3|sense;AluSx4_dup8815|chr16:21423722-21424005:+|2.031759025621936|0.345037497093244|2.56|151.0|8|3|sense AluSx4_dup8893|chr16:30244196-30244479:+|1.940587555658868|0.2190278688344462|3.15|150.0|7|3|sense AluSx4_dup8893|chr16:30244196-30244479:+|1.940587555658868|0.2190278688344462|3.15|150.0|7|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.2562866210938 2 560.256234 1118.49791 -0.036978 -2.0717E-05 0.53582 0.0003002 0.49885 0.00027948 560.2565996315958 34.776 0.83196 38.462 38.229 39.061 3.6859 78 64 2 0 0 0 0.56333 1 6265 6265 1.4819 0 1 147390 40216 338 25432 25443 46010 46010 -0.05659492689233048 SEAEHQRAY 9 Unmodified _SEAEHQRAY_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN47_class_I_Rep_1 2 545.7493896484375 2 545.749244 1089.48394 -0.080002 -4.3661E-05 -0.34862 -0.00019026 -0.42863 -0.00023392 545.748939912565 13.209 0.40924 16.666 16.568 16.977 3.457 72 46 3 0 0 0 0.11648 2 261 261;293 30.703 15.455 1 152440 40217 5530 25433 25444 46011;46012 46011 -0.05722680607004804 SEAEHQRAY 9 Unmodified _SEAEHQRAY_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN47_class_I_Rep_2 3 545.749267578125 2 545.749244 1089.48394 0.020258 1.1056E-05 -0.50383 -0.00027496 -0.48357 -0.00026391 545.748909794014 13.262 0.29104 16.65 16.553 16.844 3.388 74 33 3 0 0 0 0.47493 1 269 269 3.2813 3.2813 1 129910 40218 5530 25433 25444 46013 46013 -0.05722680607004804 SEAEHQRAY 9 Unmodified _SEAEHQRAY_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS UPN47_class_I_Rep_3 4 545.7487182617188 2 545.749244 1089.48394 -0.45139 -0.00024635 -0.021005 -1.1463E-05 -0.4724 -0.00025781 545.7491437323074 13.248 0.31909 16.621 16.507 16.826 3.3734 82 35 3 0 0 0 0.279 2 263 263;293 15.248 6.5031 1 118390 40219 5530 25433 25444 46014;46015 46014 -0.05722680607004804 SEAEQTLRF 9 Unmodified _SEAEQTLRF_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;chr1:39215429-39231182|151|40.97|0.47|6.44|+|ENST00000671089|MACF1,MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MSMS UPN47_class_I_Rep_3 4 540.77001953125 2 540.769645 1079.52474 NaN NaN NaN NaN NaN NaN NaN 41.405 1 44.642 44.142 45.142 3.2372 0 0 0 0.3377 1 8397 8397 8.7454 2.5396 1 40220 2569 25434 25445 46016 46016 -0.011843392873743142 SEAKHSCHCC 10 Unmodified _SEAKHSCHCC_ 0 0 0 REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407 REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407 MSMS UPN47_class_I_Rep_1 2 552.704345703125 2 552.704611 1103.39467 NaN NaN NaN NaN NaN NaN NaN 119.4 1 123.01 122.51 123.51 3.6036 0 0 0 0.53105 1 29669 29669 1.4819 0.15237 1 + 40221 21274 25435 25446 46017 46017 -0.15289298154038988 SEALIVLQL 9 Unmodified _SEALIVLQL_ 0 0 0 REV__ENST00000264995.7_1_3:131188541-131190034:-|nuORF REV__ENST00000264995.7_1_3:131188541-131190034:-|nuORF MSMS UPN47_class_I_Rep_3 4 493.30010986328125 2 493.30005 984.585547 NaN NaN NaN NaN NaN NaN NaN 84.394 1 87.755 87.255 88.255 3.3615 0 0 0 0.25702 1 21183 21183 13.042 0 1 + 40222 21587 25436 25447 46018 46018 0.09263797762855575 SEALPYPGY 9 Unmodified _SEALPYPGY_ 0 0 0 REV__nc|ENSG00000149970|Q8WXI2-4|CNKSR2 REV__nc|ENSG00000149970|Q8WXI2-4|CNKSR2 MULTI-MSMS UPN47_class_I_Rep_3 4 498.73638916015625 2 498.737283 995.460012 -0.57224 -0.0002854 -0.42186 -0.0002104 -0.99411 -0.0004958 498.7369716884201 18.846 1.5349 22.2 21.305 22.84 3.3545 226 163 2 0 0 0 0.48414 2 1752 1457;1752 2.3027 1.5091 1 73478 + 40223 19627 25437 25448 46019;46020 46020 -0.0378991409338596 SEANVQRLY 9 Unmodified _SEANVQRLY_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 MULTI-MSMS UPN47_class_I_Rep_2 3 540.7788696289062 2 540.277638 1078.54072 0.00064227 3.47E-07 -1.1308 -0.00061095 -1.1302 -0.00061061 540.277296544739 34.871 0.44736 38.296 37.951 38.399 3.4253 39 31 2 0 0 0 0.47197 1 6325 6325 3.5965 1.019 1 58247 40224 2337 25438 25449 46021 46021 0.00459366949530704 SEANVQRLY 9 Unmodified _SEANVQRLY_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 MSMS UPN47_class_I_Rep_3 4 540.2769775390625 2 540.277638 1078.54072 NaN NaN NaN NaN NaN NaN NaN 34.949 1 38.213 37.713 38.713 3.2639 0 0 0 0.37476 1 6414 6414 6.7232 0.96273 1 40225 2337 25438 25449 46022 46022 0.00459366949530704 SEANVQRLY 9 Unmodified _SEANVQRLY_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 MULTI-MATCH UPN47_class_I_Rep_1 2 2 540.277638 1078.54072 -0.028113 -1.5189E-05 -0.49536 -0.00026763 -0.52348 -0.00028282 540.2771970914984 34.432 0.34607 38.118 38.001 38.347 3.6859 -0.089376 0.00026853 NaN 3.5965 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 57771 40226 2337 25438 25449 0.00459366949530704 SEANYITGEQ 10 Unmodified _SEANYITGEQ_ 0 0 0 REV__MLT1A0_dup2977|chr2:197271199-197271520:+|1.745485793312104|0.0051209497268109|8.41|151.0|2|1|sense REV__MLT1A0_dup2977|chr2:197271199-197271520:+|1.745485793312104|0.0051209497268109|8.41|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2501220703125 2 556.248743 1110.48293 -0.035771 -1.9898E-05 0.29633 0.00016483 0.26056 0.00014493 556.2488671546159 32.378 0.29907 36.091 35.991 36.29 3.7131 38 24 2 0 0 0 0.56155 1 5556 5556 2.7352 0.89096 1 64272 + 40227 31597 25439 25450 46023 46023 -0.0678893976657946 SEAPARQGF 9 Unmodified _SEAPARQGF_ 0 0 0 ENSG00000164306.11,PRIMPOL,chr4,+,I8.1,184678395,184682247|31|6.24|1|intron;ENSG00000164306.11,PRIMPOL,chr4,+,I8.1,184678395,184682247|31|6.24|3|intron;nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL ENSG00000164306.11,PRIMPOL,chr4,+,I8.1,184678395,184682247|31|6.24|1|intron ENSG00000164306.11,PRIMPOL,chr4,+,I8.1,184678395,184682247|31|6.24|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 481.7379150390625 2 481.738148 961.461744 -0.61784 -0.00029764 0.57261 0.00027585 -0.045233 -2.179E-05 481.73837933058735 24.073 0.64686 27.423 27.053 27.7 3.3509 68 49 2 0 0 0 0.30034 1 3149 3149 13.906 3.0821 1 62565 40228 4102 25440 25451 46024 46024 -0.020528602847548427 SECCCDWMF 9 Unmodified _SECCCDWMF_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS UPN47_class_I_Rep_2 3 562.1717529296875 2 562.171224 1122.32789 NaN NaN NaN NaN NaN NaN NaN 117.95 1 121.43 120.93 121.93 3.4822 0 0 0 0.4029 1 28846 28846 0 0 1 + 40229 17949 25441 25452 46025 46025 -0.22837669760156132 SECCCDWMF 9 Unmodified _SECCCDWMF_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS UPN48_class_I_Rep_1 5 561.7030639648438 2 562.171224 1122.32789 NaN NaN NaN NaN NaN NaN NaN 37.619 1 41.124 40.624 41.624 3.5052 0 0 0 0.4029 1 6417 6417 0 0 1 + 40230 17949 25441 25452 46026 46026 -0.22837669760156132 SECCCDWMF 9 Unmodified _SECCCDWMF_ 0 0 0 REV__nc|ENSG00000085224|P46100-2|ATRX REV__nc|ENSG00000085224|P46100-2|ATRX MSMS UPN48_class_I_Rep_2 6 562.2473754882812 2 562.171224 1122.32789 NaN NaN NaN NaN NaN NaN NaN 114.65 1 118.31 117.81 118.81 3.6616 0 0 0 0.4029 1 27412 27412 0 0 1 + 40231 17949 25441 25452 46027 46027 -0.22837669760156132 SEDDESLKGH 10 Unmodified _SEDDESLKGH_ 0 0 0 REV__ENST00000522437.1_1_15:55787374-55790501:-|nuORF REV__ENST00000522437.1_1_15:55787374-55790501:-|nuORF MSMS UPN47_class_I_Rep_3 4 558.7437133789062 2 558.743825 1115.4731 NaN NaN NaN NaN NaN NaN NaN 23.27 1 26.62 26.12 27.12 3.3503 0 0 0 0.53105 1 2929 2929 1.4819 0 1 + 40232 22792 25442 25453 46028 46028 -0.08002127771942469 SEDDGCCC 8 Unmodified _SEDDGCCC_ 0 0 0 REV__ENSG00000164880|ENST00000404767|INTS1 REV__ENSG00000164880|ENST00000404767|INTS1 MSMS UPN46_class_I_Rep_3 1 416.10003662109375 2 416.101321 830.188089 NaN NaN NaN NaN NaN NaN NaN 88.539 1 88.539 88.039 89.039 0 0 0 0 0.40798 1 21267 21267 0 0 1 + 40233 20090 25443 25454 46029 46029 -0.23379710773019724 SEDDIHRFT 9 Unmodified _SEDDIHRFT_ 0 0 0 ENST00000604759.1_1_14:39684672-39685536:+|nuORF ENST00000604759.1_1_14:39684672-39685536:+|nuORF ENST00000604759.1_1_14:39684672-39685536:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 560.2565307617188 2 560.256902 1118.49925 -0.10718 -6.005E-05 -0.56638 -0.00031732 -0.67356 -0.00037737 560.2566287561432 35.226 0.72981 38.49 38.162 38.892 3.2639 106 50 3 0 0 0 0.42249 1 6464 6464 6.7232 0.51738 1 151090 40234 7672 25444 25455 46030 46030 -0.05525813809799729 SEDEIKKAY 9 Unmodified _SEDEIKKAY_ 0 0 0 nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 MULTI-MSMS UPN47_class_I_Rep_1 2 541.7717895507812 2 541.771854 1081.52915 -0.070938 -3.8432E-05 -0.15923 -8.6266E-05 -0.23017 -0.0001247 541.77169599915 20.529 0.57988 24.173 23.859 24.439 3.6436 95 59 2 0 0 0 0.32682 1 2089 2089 12.241 5.5175 1 63799 40235 4361 25445 25456 46031 46031 -0.0083487486449485 SEDEIKKAY 9 Unmodified _SEDEIKKAY_ 0 0 0 nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 nc|ENSG00000168259|Q99615-2|DNAJC7 MSMS UPN47_class_I_Rep_2 3 541.77197265625 2 541.771854 1081.52915 NaN NaN NaN NaN NaN NaN NaN 20.744 1 24.151 23.651 24.651 3.4074 0 0 0 0.39518 1 2207 2207 1.8442 0 1 40236 4361 25445 25456 46032 46032 -0.0083487486449485 SEDKKNIIL 9 Unmodified _SEDKKNIIL_ 0 0 0 ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|3|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|4|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|2|intron ENST00000530945.1_1_11:65623404-65625570:-|nuORF ENST00000530945.1_1_11:65623404-65625570:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 530.304443359375 2 530.305864 1058.59717 0.43891 0.00023276 -1.1587 -0.00061445 -0.71975 -0.00038169 530.3049642955289 29.163 0.58634 32.794 32.532 33.119 3.6316 104 63 2 0 0 0 0.39745 1 4095 4095 8.1555 1.9497 1 123190 40237 4589 25446 25457 46033 46033 0.07021994786191499 SEDYCMAV 8 Unmodified _SEDYCMAV_ 0 0 0 ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2 ENSG00000084234|ENST00000338167|APLP2 ENSG00000084234|ENST00000338167|APLP2 MSMS UPN48_class_I_Rep_3 7 459.1720886230469 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 47.871 1 51.505 51.005 52.005 3.6339 0 0 0 0.40738 1 9440 9440 0.79363 0 1 40238 1253 25447 25458 46034 46034 -0.1308575503933298 SEDYDLLFSN 10 Unmodified _SEDYDLLFSN_ 0 0 0 nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA nc|ENSG00000188877|Q6S8J7-2|POTEA nc|ENSG00000188877|Q6S8J7-2|POTEA MSMS UPN48_class_I_Rep_2 6 601.766357421875 2 601.764226 1201.5139 NaN NaN NaN NaN NaN NaN NaN 22.077 1 25.722 25.222 26.222 3.6459 0 0 0 0.53105 1 2196 2196 1.1933 0.23107 1 40239 16786 25448 25459 46035 46035 -0.07879786452326698 SEEARHKAVT 10 Unmodified _SEEARHKAVT_ 0 0 0 ENSG00000181733|ENST00000641125|OR2Z1 ENSG00000181733|ENST00000641125|OR2Z1 ENSG00000181733|ENST00000641125|OR2Z1 MSMS UPN48_class_I_Rep_3 7 564.2949829101562 2 564.293819 1126.57309 NaN NaN NaN NaN NaN NaN NaN 24.361 1 28.13 27.63 28.63 3.769 0 0 0 0.53105 1 2807 2807 1.3295 0.5359 1 40240 4925 25449 25460 46036 46036 0.014861543525057641 SEEDLKVLF 9 Unmodified _SEEDLKVLF_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 540.2846069335938 2 540.284597 1078.55464 0.42012 0.00022698 -0.30784 -0.00016632 0.11228 6.0662E-05 540.284298820838 61.378 0.89506 64.759 64.406 65.301 3.3815 176 64 4 0 0 0 0.0058741 5 14418 14296;14335;14377;14418;14460 96.367 42.474 1 823490 40241 772 25450 25461 46037;46038;46039;46040;46041 46040 0.018505996579506245 SEEDLKVLF 9 Unmodified _SEEDLKVLF_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN47_class_I_Rep_2 3 540.2844848632812 2 540.284597 1078.55464 0.41258 0.00022291 -0.3347 -0.00018083 0.077888 4.2082E-05 540.2842475202872 61.61 1.0271 64.87 64.523 65.55 3.2594 161 65 3 0 0 0 0.0058741 6 14555 14423;14470;14513;14555;14598;14643 118.07 53.832 1 654620 40242 772 25450 25461 46042;46043;46044;46045;46046;46047 46045 0.018505996579506245 SEEDLKVLF 9 Unmodified _SEEDLKVLF_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 540.2842407226562 2 540.284597 1078.55464 0.37252 0.00020127 -0.23621 -0.00012762 0.13632 7.3649E-05 540.284361574475 61.597 0.83715 64.764 64.444 65.281 3.1667 159 60 3 0 0 0 0.0070571 6 14518 14480;14518;14556;14598;14639;14682 86.332 42.474 1 688490 40243 772 25450 25461 46048;46049;46050;46051;46052;46053 46049 0.018505996579506245 SEEDLKVLF 9 Unmodified _SEEDLKVLF_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MSMS UPN48_class_I_Rep_3 7 540.2841796875 2 540.284597 1078.55464 0.54771 0.00029592 -0.67203 -0.00036309 -0.12432 -6.7171E-05 540.2842694328043 61.332 0.42602 64.845 64.629 65.055 3.5129 38 34 2 0 0 0 0.39745 1 13521 13521 8.1555 2.4237 1 103370 40244 772 25450 25461 46054 46054 0.018505996579506245 SEEDLKVLF 9 Unmodified _SEEDLKVLF_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 540.284597 1078.55464 0.30172 0.00016302 1.2395 0.00066966 1.5412 0.00083268 540.2861746352675 65.158 0.034744 65.158 65.138 65.173 0 0.2487 0.0016713 NaN 118.07 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 45726 40245 772 25450 25461 0.018505996579506245 SEEDLKVLF 9 Unmodified _SEEDLKVLF_ 0 0 0 ENSG00000011304|ENST00000356948|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF ENSG00000011304|ENST00000356948|PTBP1 ENSG00000011304|ENST00000356948|PTBP1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 540.284597 1078.55464 0.53668 0.00028996 -0.011467 -6.1955E-06 0.52522 0.00028377 540.2844800731582 61.592 0.37576 65.059 64.841 65.217 3.4678 0.15034 0.00031955 NaN 118.07 40 34 2 NaN NaN NaN NaN 0 NaN NaN 0 111410 40246 772 25450 25461 0.018505996579506245 SEEEFLRTY 9 Unmodified _SEEEFLRTY_ 0 0 0 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 MSMS UPN47_class_I_Rep_1 2 587.2747802734375 2 587.274761 1172.53497 NaN NaN NaN NaN NaN NaN NaN 47.452 1 51.147 50.647 51.647 3.6951 0 0 0 0.13348 1 10154 10154 20.581 8.3403 1 40247 4826 25451 25462 46055 46055 -0.04439776352796798 SEEEFLRTY 9 Unmodified _SEEEFLRTY_ 0 0 0 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 ENSG00000178585|ENST00000377263|CTNNBIP1 MSMS UPN47_class_I_Rep_1 2 587.2877197265625 2 587.274761 1172.53497 NaN NaN NaN NaN NaN NaN NaN 47.488 1 51.183 50.683 51.683 3.6951 0 0 0 0.24627 1 10163 10163 13.615 4.2317 1 40248 4826 25451 25462 46056 46056 -0.04439776352796798 SEEEIREAF 9 Unmodified _SEEEIREAF_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000585658.1_1_17:68237680-68237866:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 555.2589111328125 2 555.259111 1108.50367 0.38929 0.00021615 -0.21797 -0.00012103 0.17132 9.5127E-05 555.2589209684509 44.996 0.62563 44.996 44.747 45.373 0 113 61 2 0 0 0 0.0055684 4 9148 9078;9109;9148;9192 107.1 47.026 1 444090 40249 3334 25452 25463 46057;46058;46059;46060 46059 -0.04624349386904214 SEEGLLRLY 9 Unmodified _SEEGLLRLY_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MULTI-MSMS UPN47_class_I_Rep_1 2 540.2901000976562 2 540.290214 1078.56587 0.41605 0.00022479 -0.55916 -0.00030211 -0.14311 -7.7322E-05 540.2898493897001 58.709 0.60864 62.126 61.721 62.329 3.4171 67 38 2 0 0 0 0.028995 2 13526 13482;13526 57.722 21.595 1 241010 40250 1169 25453 25464 46061;46062 46062 0.029734217520854145 SEEGLLRLY 9 Unmodified _SEEGLLRLY_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MULTI-MSMS UPN47_class_I_Rep_2 3 540.2901000976562 2 540.290214 1078.56587 0.47421 0.00025621 -0.59643 -0.00032224 -0.12222 -6.6034E-05 540.2898915159675 58.906 0.61435 62.187 61.815 62.429 3.2818 86 38 3 0 0 0 0.0061372 2 13659 13614;13659 75.761 39.634 1 155490 40251 1169 25453 25464 46063;46064 46064 0.029734217520854145 SEEGLLRLY 9 Unmodified _SEEGLLRLY_ 0 0 0 ENSG00000077235|ENST00000356183|GTF3C1;nc|ENSG00000077235|Q12789-3|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 ENSG00000077235|ENST00000356183|GTF3C1 MULTI-MSMS UPN47_class_I_Rep_3 4 540.2906494140625 2 540.290214 1078.56587 0.32724 0.0001768 -0.094474 -5.1044E-05 0.23276 0.00012576 540.2901288630109 59.003 0.64195 62.169 61.835 62.476 3.1658 81 37 3 0 0 0 0.006828 1 13716 13716 72.968 36.841 1 184690 40252 1169 25453 25464 46065 46065 0.029734217520854145 SEEINLKY 8 Unmodified _SEEINLKY_ 0 0 0 REV__L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|71|3|sense REV__L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|71|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.26519775390625 2 498.25584 994.497126 0.17046 8.4934E-05 0.079938 3.9829E-05 0.2504 0.00012476 498.25580350034187 35.551 0.80119 35.551 35.205 36.007 0 92 53 3 0 0 0 0.82752 1 6576 6576 18.146 0 1 230680 40253 28456 25454 25465 46066 46066 -0.0003424254761057455 SEEIPEVTSE 10 Unmodified _SEEIPEVTSE_ 0 0 0 nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1 nc|ENSG00000154359|Q17RB8-2|LONRF1 nc|ENSG00000154359|Q17RB8-2|LONRF1 MULTI-MSMS UPN47_class_I_Rep_3 4 560.2566528320312 2 560.256234 1118.49791 -0.10718 -6.005E-05 0.62719 0.00035139 0.52 0.00029134 560.2566287561432 35.226 0.72981 38.49 38.162 38.892 3.2639 106 50 3 0 0 0 0.56333 1 6600 6600 1.4819 0.28856 1 151090 40254 3670 25455 25466 46067 46067 -0.05659492689233048 SEEKAFHLQ 9 Unmodified _SEEKAFHLQ_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MSMS UPN47_class_I_Rep_1 2 544.7723388671875 2 544.772188 1087.52982 -0.060378 -3.2893E-05 -0.13529 -7.3705E-05 -0.19567 -0.0001066 544.77204004624 18.604 1.5803 22.185 21.586 23.167 3.5806 427 188 3 0 0 0 0.47197 1 1811 1811 3.5965 0 1 316900 + 40255 19624 25456 25467 46068 46068 -0.0104403542475211 SEELVQKY 8 Unmodified _SEELVQKY_ 0 0 0 nc|ENSG00000115310|Q9NQC3-3|RTN4;ENSG00000115310.18,RTN4,chr2,-,I10.1,55027486,55028163|39|9.72|3|intron;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310.18,RTN4,chr2,-,I10.1,55027486,55028163|39|9.72|1|intron;ENSG00000115310|ENST00000337526|RTN4 nc|ENSG00000115310|Q9NQC3-3|RTN4 nc|ENSG00000115310|Q9NQC3-3|RTN4 MULTI-MSMS UPN46_class_I_Rep_3 1 498.34014892578125 2 498.25584 994.497126 0.17046 8.4934E-05 0.079938 3.9829E-05 0.2504 0.00012476 498.25580350034187 35.551 0.80119 35.551 35.205 36.007 0 92 53 3 0 0 0 0.82752 7 6585 6429;6433;6471;6500;6511;6558;6585 78.728 30.979 1 230680 40256 2124 25457 25468 46069;46070;46071;46072;46073;46074;46075 46075 -0.0003424254762194323 SEEPFVVKL 9 Unmodified _SEEPFVVKL_ 0 0 0 nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2 nc|ENSG00000081177|Q9NVH0-2|EXD2 nc|ENSG00000081177|Q9NVH0-2|EXD2 MULTI-SECPEP UPN48_class_I_Rep_3 7 524.8055419921875 2 524.289682 1046.56481 0.39858 0.00020897 0.075319 3.9489E-05 0.4739 0.00024846 524.7913733834367 59.389 0.16175 62.913 62.84 63.001 3.5231 12 11 2 0 0 0 0.12157 1 12965 12965 6.2058 3.6283 1 59517 40257 1213 25458 25469 46076 46076 0.04339207383191024 SEEQLRLN 8 Unmodified _SEEQLRLN_ 0 0 0 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS UPN47_class_I_Rep_2 3 494.7565612792969 2 494.756538 987.498523 -0.13169 -6.5152E-05 -0.26917 -0.00013317 -0.40086 -0.00019833 494.75637252477287 34.066 0.57046 37.505 37.211 37.782 3.4398 56 37 2 0 0 0 0.82752 1 6071 6071 2.3027 0 1 71255 + 40258 21087 25459 25470 46077 46077 0.00427391541131783 SEERDLLAHY 10 Unmodified _SEERDLLAHY_ 0 0 0 REV__ENSG00000170819|ENST00000302334|BFSP2 REV__ENSG00000170819|ENST00000302334|BFSP2 MULTI-MSMS UPN47_class_I_Rep_3 4 616.7980346679688 2 616.798934 1231.58332 -0.043849 -2.7046E-05 -0.073247 -4.5179E-05 -0.1171 -7.2225E-05 616.7987926391742 38.994 0.83587 42.232 41.855 42.69 3.238 125 59 3 0 0 0 0.54822 1 7569 7569 5.7319 0.43497 1 166750 + 40259 20381 25460 25471 46078 46078 -0.023212827129100333 SEFELLRSY 9 Unmodified _SEFELLRSY_ 0 0 0 ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520.11,SNX4,chr3,-,I11.1,125453956,125457265|24|5.72|1|intron;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4 ENST00000473417.5_1_3:125188296-125239016:-|nuORF ENST00000473417.5_1_3:125188296-125239016:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 572.2880859375 2 572.287671 1142.56079 0.39456 0.0002258 0.03808 2.1793E-05 0.43264 0.00024759 572.2876131997231 59.857 0.86761 63.255 62.829 63.697 3.3982 106 57 3 0 0 0 0.006587 5 13887 13841;13847;13887;13927;13975 84.522 40.75 1 261040 40260 2079 25461 25472 46079;46080;46081;46082;46083 46081 -0.004788821105194074 SEFELLRSY 9 Unmodified _SEFELLRSY_ 0 0 0 ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520.11,SNX4,chr3,-,I11.1,125453956,125457265|24|5.72|1|intron;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4 ENST00000473417.5_1_3:125188296-125239016:-|nuORF ENST00000473417.5_1_3:125188296-125239016:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 572.2890625 2 572.287671 1142.56079 0.49202 0.00028157 -0.23461 -0.00013426 0.25741 0.00014731 572.2875703126023 60.049 0.84943 63.322 63.007 63.857 3.2731 100 53 3 0 0 0 0.039218 6 14095 13957;14008;14057;14095;14097;14139 53.317 28.326 1 179540 40261 2079 25461 25472 46084;46085;46086;46087;46088;46089 46087 -0.004788821105194074 SEFELLRSY 9 Unmodified _SEFELLRSY_ 0 0 0 ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENSG00000114520.11,SNX4,chr3,-,I11.1,125453956,125457265|24|5.72|1|intron;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4 ENST00000473417.5_1_3:125188296-125239016:-|nuORF ENST00000473417.5_1_3:125188296-125239016:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 572.2879638671875 2 572.287671 1142.56079 0.36659 0.00020979 0.23923 0.00013691 0.60582 0.0003467 572.2876768640289 60.111 0.85489 63.276 62.9 63.754 3.1651 90 54 2 0 0 0 0.034404 3 14075 14075;14114;14164 55.235 28.967 1 230200 40262 2079 25461 25472 46090;46091;46092 46090 -0.004788821105194074 SEFGNHYLY 9 Unmodified _SEFGNHYLY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS UPN47_class_I_Rep_1 2 565.251708984375 2 565.251089 1128.48762 NaN NaN NaN NaN NaN NaN NaN 47.283 1 50.978 50.478 51.478 3.6951 0 0 0 0.2088 1 10110 10110 15.847 5.0233 1 40263 5270 25462 25473 46093 46093 -0.07148010833134322 SEFKGDLETL 10 Unmodified _SEFKGDLETL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS UPN48_class_I_Rep_1 5 569.7858276367188 2 569.784961 1137.55537 0.39532 0.00022524 -0.012651 -7.2082E-06 0.38266 0.00021804 569.7848404846906 49.224 0.50689 52.748 52.52 53.027 3.5239 62 37 2 0 0 0 0.32913 2 9904 9904;9923 26.021 3.3626 1 137590 40264 745 25463 25474 46094;46095 46094 -0.00790605692986901 SEFKGDLETL 10 Unmodified _SEFKGDLETL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS UPN48_class_I_Rep_2 6 569.784423828125 2 569.784961 1137.55537 0.41382 0.00023579 -0.0023696 -1.3502E-06 0.41146 0.00023444 569.7847544994271 48.981 0.51648 52.698 52.496 53.013 3.7175 56 33 2 0 0 0 0.37703 2 9849 9849;9855 21.59 3.2171 1 154100 40265 745 25463 25474 46096;46097 46096 -0.00790605692986901 SEFKGDLETL 10 Unmodified _SEFKGDLETL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS UPN48_class_I_Rep_3 7 570.2852172851562 2 569.784961 1137.55537 0.36391 0.00020735 0.22105 0.00012595 0.58496 0.0003333 569.7849518905239 49.194 0.51377 52.823 52.59 53.103 3.6291 60 35 2 0 0 0 0.37703 1 9883 9883 21.59 3.2171 1 192510 40266 745 25463 25474 46098 46098 -0.00790605692986901 SEFRVGQTPSY 11 Unmodified _SEFRVGQTPSY_ 0 0 0 REV__nc|ENSG00000128581|Q9H7X7-2|IFT22 REV__nc|ENSG00000128581|Q9H7X7-2|IFT22 MULTI-MSMS UPN47_class_I_Rep_2 3 636.30810546875 2 635.806759 1269.59897 0.51646 0.00032837 -0.24849 -0.00015799 0.26797 0.00017038 635.8064319076766 53.569 0.60796 56.896 56.652 57.26 3.3266 74 42 2 0 0 0 0.66277 1 12127 12127 2.086 2.086 1 121130 + 40267 31974 25464 25475 46099 46099 -0.025049961958302447 SEFYKHIVL 9 Unmodified _SEFYKHIVL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-MSMS UPN48_class_I_Rep_1 5 568.310546875 2 568.310949 1134.60735 0.39831 0.00022637 -0.37469 -0.00021294 0.02362 1.3423E-05 568.3106364102686 48.682 0.69927 52.206 51.849 52.549 3.5239 112 48 3 0 0 0 0.081756 5 9747 9703;9747;9753;9787;9843 38.176 15.439 1 341420 40268 3060 25465 25476 46100;46101;46102;46103;46104 46101 0.04542602511401128 SEFYKHIVL 9 Unmodified _SEFYKHIVL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-MSMS UPN48_class_I_Rep_2 6 568.310791015625 2 568.310949 1134.60735 0.39493 0.00022444 -0.40806 -0.00023191 -0.013131 -7.4624E-06 568.3105529892143 48.373 0.73001 52.101 51.778 52.508 3.7286 114 53 3 0 0 0 0.021334 4 9645 9645;9684;9721;9764 62.573 31.936 1 322870 40269 3060 25465 25476 46105;46106;46107;46108 46105 0.04542602511401128 SEFYKHIVL 9 Unmodified _SEFYKHIVL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-MSMS UPN48_class_I_Rep_3 7 568.3104858398438 2 568.310949 1134.60735 0.36439 0.00020709 -0.62079 -0.0003528 -0.2564 -0.00014571 568.31056380596 48.55 0.55862 52.184 51.908 52.466 3.6339 81 42 2 0 0 0 0.057664 4 9648 9605;9648;9687;9726 45.7 22.963 1 277690 40270 3060 25465 25476 46109;46110;46111;46112 46110 0.04542602511401128 SEGIKSPKYL 10 Unmodified _SEGIKSPKYL_ 0 0 0 REV__L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|62|3|sense REV__L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|62|3|sense MSMS UPN47_class_I_Rep_1 2 561.3123779296875 2 561.313689 1120.61282 NaN NaN NaN NaN NaN NaN NaN 60.15 1 63.549 63.049 64.049 3.3982 0 0 0 0.53105 1 14021 14021 1.4819 0 1 + 40271 26090 25466 25477 46113 46113 0.05734281303239186 SEGLIKALF 9 Unmodified _SEGLIKALF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS UPN47_class_I_Rep_1 2 489.2865905761719 2 489.286943 976.559333 0.10926 5.3457E-05 -0.17425 -8.526E-05 -0.064997 -3.1802E-05 489.2869029060996 66.376 0.43761 69.733 69.496 69.934 3.3576 38 29 2 0 0 0 0.30034 1 15903 15903 13.906 0 1 53134 40272 860 25467 25478 46114 46114 0.0701152859138574 SEGLIKALF 9 Unmodified _SEGLIKALF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-SECPEP UPN47_class_I_Rep_2 3 489.21075439453125 2 489.286943 976.559333 0.20947 0.00010249 -0.076523 -3.7442E-05 0.13295 6.505E-05 489.2869782624678 66.806 0.36804 70.065 69.884 70.252 3.2588 30 25 2 0 0 0 0.12157 1 16025 16025 6.2058 0 1 65047 40273 860 25467 25478 46115 46115 0.0701152859138574 SEGLIKALF 9 Unmodified _SEGLIKALF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MSMS UPN47_class_I_Rep_3 4 489.2870788574219 2 489.286943 976.559333 NaN NaN NaN NaN NaN NaN NaN 66.656 1 69.841 69.341 70.341 3.1853 0 0 0 0.37692 1 16090 16090 6.2058 0 1 40274 860 25467 25478 46116 46116 0.0701152859138574 SEGSFLLTTF 10 Unmodified _SEGSFLLTTF_ 0 0 0 ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO ENST00000471419.6_1_X:70511819-70517312:+|nuORF ENST00000471419.6_1_X:70511819-70517312:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 551.7925415039062 2 551.276772 1100.53899 0.46559 0.00025667 -0.054927 -3.028E-05 0.41067 0.00022639 551.2765823025036 82.843 0.14385 86.381 86.306 86.45 3.5386 20 16 2 0 0 0 0.52562 1 20703 20703 8.7454 0 1 48337 40275 3462 25468 25479 46117 46117 -0.007256868591184684 SEGSFLLTTF 10 Unmodified _SEGSFLLTTF_ 0 0 0 ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO ENST00000471419.6_1_X:70511819-70517312:+|nuORF ENST00000471419.6_1_X:70511819-70517312:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 551.276772 1100.53899 0.47143 0.00025989 0.025717 1.4177E-05 0.49715 0.00027406 551.2765995759893 83.083 0.40462 86.433 86.211 86.616 3.35 0.025848 1.9939E-05 NaN 8.7454 67 46 2 NaN NaN NaN NaN 0 NaN NaN 0 77487 40276 3462 25468 25479 -0.007256868591184684 SEHFPQKK 8 Unmodified _SEHFPQKK_ 0 0 0 L1ME3B_dup1397|chr3:37258763-37259250:-|1.1431215907150611|0.026558320299209|5.43|151.0|12|3|sense L1ME3B_dup1397|chr3:37258763-37259250:-|1.1431215907150611|0.026558320299209|5.43|151.0|12|3|sense L1ME3B_dup1397|chr3:37258763-37259250:-|1.1431215907150611|0.026558320299209|5.43|151.0|12|3|sense MSMS UPN47_class_I_Rep_1 2 500.7664489746094 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 31.391 1 35.121 34.621 35.621 3.7293 0 0 0 0.40625 1 5261 5261 2.3027 1.6124 1 40277 12697 25469 25480 46118 46118 0.014003031290030776 SEHGINIDL 9 Unmodified _SEHGINIDL_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN48_class_I_Rep_1 5 499.25091552734375 2 499.251089 996.487624 0.1829 9.1314E-05 -0.24626 -0.00012295 -0.063358 -3.1631E-05 499.2508910513545 49.33 0.55741 52.854 52.607 53.164 3.5246 69 38 2 0 0 0 0.32682 1 10040 10040 12.241 12.241 1 303540 40278 3825;16725 25470 25481 46119 46119 -0.01076010833151031 SEHGINIDL 9 Unmodified _SEHGINIDL_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN48_class_I_Rep_2 6 499.2514953613281 2 499.251089 996.487624 0.21861 0.00010914 -0.11254 -5.6185E-05 0.10607 5.2958E-05 499.2509687401043 49.1 0.68806 52.818 52.48 53.168 3.7175 74 44 2 0 0 0 0.26468 1 9904 9904 16.149 16.149 1 198550 40279 3825;16725 25470 25481 46120 46120 -0.01076010833151031 SEHGINIDL 9 Unmodified _SEHGINIDL_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN48_class_I_Rep_3 7 499.25115966796875 2 499.251089 996.487624 0.16042 8.009E-05 0.002389 1.1927E-06 0.16281 8.1283E-05 499.2510196209713 49.225 0.57775 52.854 52.62 53.198 3.6291 69 39 2 0 0 0 0.26468 2 9890 9890;9947 16.149 16.149 1 210800 40280 3825;16725 25470 25481 46121;46122 46121 -0.01076010833151031 SEHGINIDL 9 Unmodified _SEHGINIDL_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 499.251089 996.487624 0.1829 9.1314E-05 -0.24626 -0.00012295 -0.063358 -3.1631E-05 499.2508910513545 49.33 0.55741 52.854 52.607 53.164 3.5246 0.012285 -0.00014804 NaN 16.149 69 38 2 NaN NaN NaN NaN 0 NaN NaN 0 303540 40281 3825;16725 25470 25481 -0.01076010833151031 SEHGINIDL 9 Unmodified _SEHGINIDL_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 499.251089 996.487624 0.21861 0.00010914 -0.11254 -5.6185E-05 0.10607 5.2958E-05 499.2509687401043 49.1 0.68806 52.818 52.48 53.168 3.7175 -0.024413 -1.4521E-05 NaN 16.149 74 44 2 NaN NaN NaN NaN 0 NaN NaN 0 198550 40282 3825;16725 25470 25481 -0.01076010833151031 SEHGINIDL 9 Unmodified _SEHGINIDL_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 499.251089 996.487624 0.16042 8.009E-05 0.002389 1.1927E-06 0.16281 8.1283E-05 499.2510196209713 49.225 0.57775 52.854 52.62 53.198 3.6291 0.012128 0.00010023 NaN 16.149 69 39 2 NaN NaN NaN NaN 0 NaN NaN 0 210800 40283 3825;16725 25470 25481 -0.01076010833151031 SEHNCQPYY 9 Unmodified _SEHNCQPYY_ 0 0 0 ENSG00000047634|ENST00000380041|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;nc|ENSG00000047634|Q9UN30-1|SCML1 ENSG00000047634|ENST00000380041|SCML1 ENSG00000047634|ENST00000380041|SCML1 MULTI-MSMS UPN47_class_I_Rep_3 4 570.7244873046875 2 570.724381 1139.43421 0.41282 0.00023561 0.15456 8.8213E-05 0.56739 0.00032382 570.7246712675803 62.96 0.3941 66.13 65.905 66.299 3.1698 36 22 2 0 0 0 0.41259 1 14945 14945 7.2892 2.5332 1 105220 40284 889 25471 25482 46123 46123 -0.1299313160732254 SEHNCQPYY 9 Unmodified _SEHNCQPYY_ 0 0 0 ENSG00000047634|ENST00000380041|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;nc|ENSG00000047634|Q9UN30-1|SCML1 ENSG00000047634|ENST00000380041|SCML1 ENSG00000047634|ENST00000380041|SCML1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 570.724381 1139.43421 0.42889 0.00024478 0.21526 0.00012285 0.64415 0.00036763 570.7244962216154 62.927 0.38494 66.183 65.977 66.362 3.2558 0.068797 2.5639E-05 NaN 7.2892 28 23 2 NaN NaN NaN NaN 0 NaN NaN 0 91073 40285 889 25471 25482 -0.1299313160732254 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MSMS UPN46_class_I_Rep_3 1 547.7958984375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 34.315 1 34.315 33.815 34.815 0 0 0 0 0.20399 1 6112 6112 16.149 3.9084 1 40286 3006 25472 25483 46124 46124 0.03372824126381602 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MSMS UPN46_class_I_Rep_3 1 547.7974853515625 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 34.344 1 34.344 33.844 34.844 0 0 0 0 0.13613 1 6121 6121 20.415 14.683 1 40287 3006 25472 25483 46125 46125 0.03372824126381602 SEIEAKVRY 9 Unmodified _SEIEAKVRY_ 0 0 0 nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000137076|ENST00000314888|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 nc|ENSG00000137076|Q9Y490-2|TLN1 MSMS UPN47_class_I_Rep_1 2 547.7952270507812 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 29.516 1 33.273 32.773 33.773 3.7578 0 0 0 0.27207 1 4699 4699 12.241 4.3305 1 40288 3006 25472 25483 46126 46126 0.03372824126381602 SEIEAVTNI 9 Unmodified _SEIEAVTNI_ 0 0 0 L1PA7_dup11743|chr15:49001464-49005047:-|2.4191035896641933|0.4756131486928624|2.35|151.0|45|2|sense L1PA7_dup11743|chr15:49001464-49005047:-|2.4191035896641933|0.4756131486928624|2.35|151.0|45|2|sense L1PA7_dup11743|chr15:49001464-49005047:-|2.4191035896641933|0.4756131486928624|2.35|151.0|45|2|sense MSMS UPN47_class_I_Rep_1 2 488.2529296875 2 488.253297 974.492041 NaN NaN NaN NaN NaN NaN NaN 57.905 1 61.342 60.842 61.842 3.437 0 0 0 0.32573 1 13331 13331 9.3831 0 1 40289 14735 25473 25484 46127 46127 0.0037745358977190335 SEIGKAVGF 9 Unmodified _SEIGKAVGF_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS UPN47_class_I_Rep_1 2 454.247314453125 2 454.247818 906.481082 -0.25957 -0.00011791 -0.80095 -0.00036383 -1.0605 -0.00048174 454.2476029352993 43.411 0.68662 47.098 46.791 47.477 3.6875 79 38 3 0 0 0 0.1249 2 8955 8909;8955 29.082 3.6527 1 99853 40290 1396 25474 25485 46128;46129 46129 0.02410096006144613 SEIGKAVGF 9 Unmodified _SEIGKAVGF_ 0 0 0 nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS UPN47_class_I_Rep_3 4 454.2477722167969 2 454.247818 906.481082 -0.4755 -0.00021599 -0.6178 -0.00028064 -1.0933 -0.00049663 454.2476484367565 43.955 0.65112 47.197 46.85 47.501 3.2419 86 40 3 0 0 0 0.17897 1 9167 9167 22.736 0.98964 1 109030 40291 1396 25474 25485 46130 46130 0.02410096006144613 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(78)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 544.7705688476562 2 544.770268 1087.52598 0.50437 0.00027477 0.024436 1.3312E-05 0.52881 0.00028808 544.7701801974086 86.856 0.64487 90.493 90.185 90.83 3.6372 218 79 3 0 0 0 0.0055465 4 21709 21679;21709;21741;21771 100.37 22.387 1 1851500 40292 734 25475 25486 46131;46132;46133;46134 46132 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(82)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_1 2 544.7703857421875 2 544.770268 1087.52598 0.50641 0.00027587 -0.043132 -2.3497E-05 0.46327 0.00025238 544.7701829640312 87.279 0.37297 90.916 90.822 91.195 3.6372 116 43 4 0 0 0 0.0058313 3 21838 21804;21838;21874 100.37 22.387 1 992510 40293 734 25475 25486 46135;46136;46137 46136 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(46)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MSMS UPN47_class_I_Rep_1 2 544.7705688476562 2 544.770268 1087.52598 NaN NaN NaN NaN NaN NaN NaN 92.561 1 96.281 95.781 96.781 3.7209 0 0 0 0.029163 1 23062 23062 46.021 11.919 1 40294 734 25475 25486 46138 46138 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(82)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_2 3 544.7705078125 2 544.770268 1087.52598 0.53817 0.00029318 -0.047851 -2.6068E-05 0.49031 0.00026711 544.7701257569016 87.404 1.235 90.851 90.183 91.418 3.4471 436 158 3 0 0 0 0.0058313 8 21643 21585;21643;21670;21700;21730;21760;21791;21824 88.904 21.56 1 2365900 40295 734 25475 25486 46139;46140;46141;46142;46143;46144;46145;46146 46140 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(48)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_2 3 544.7715454101562 2 544.770268 1087.52598 0.59177 0.00032238 -0.17243 -9.3935E-05 0.41934 0.00022844 544.770190886701 93.072 0.28236 96.541 96.32 96.602 3.4687 53 39 2 0 0 0 0.051515 1 22957 22957 48.346 6.2513 1 105620 40296 734 25475 25486 46147 46147 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(82)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.770263671875 2 544.770268 1087.52598 0.47341 0.0002579 -0.021264 -1.1584E-05 0.45214 0.00024631 544.7701443295088 87.064 0.28683 90.445 90.208 90.495 3.3801 73 37 3 0 0 0 0.0058313 1 21816 21816 81.613 14.269 1 1116600 40297 734 25475 25486 46148 46148 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(82)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.7703247070312 2 544.770268 1087.52598 0.47419 0.00025833 0.0058787 3.2025E-06 0.48007 0.00026153 544.770178108248 87.315 0.46759 90.696 90.495 90.963 3.3801 185 57 4 0 0 0 0.0058313 4 21872 21843;21872;21906;21939 88.904 21.56 1 1581500 40298 734 25475 25486 46149;46150;46151;46152 46150 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(82)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.7704467773438 2 544.770268 1087.52598 0.47496 0.00025874 0.012853 7.0018E-06 0.48781 0.00026574 544.7701865961152 87.663 0.28051 91.051 90.933 91.213 3.3873 89 32 3 0 0 0 0.0058313 1 22007 22007 81.613 14.269 1 1062700 40299 734 25475 25486 46153 46153 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(74)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.7711181640625 2 544.770268 1087.52598 0.47544 0.00025901 -0.05342 -2.9101E-05 0.42202 0.0002299 544.7701511657563 87.997 0.39695 91.385 91.206 91.603 3.3873 65 41 2 0 0 0 0.0064682 2 22078 22043;22078 74.423 14.033 1 552830 40300 734 25475 25486 46154;46155 46155 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ SEIM(1)SVLFF SEIM(57)SVLFF 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MSMS UPN47_class_I_Rep_3 4 544.7700805664062 2 544.770268 1087.52598 0.48788 0.00026578 -0.1729 -9.4192E-05 0.31497 0.00017159 544.7701012094267 93.045 0.3809 96.45 96.257 96.638 3.4052 66 53 2 0 0 0 0.029391 1 23218 23218 57.471 6.6163 1 245900 40301 734 25475 25486 46156 46156 5 -0.014278412428438969 SEIMSVLFF 9 Oxidation (M) _SEIM(Oxidation (M))SVLFF_ 0 0 1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 ENSG00000007350|ENST00000369915|TKTL1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 544.770268 1087.52598 0.50991 0.00027778 0.062096 3.3828E-05 0.572 0.00031161 544.7702879317944 87.861 0.13286 91.518 91.468 91.601 3.6563 0.066483 0.00011105 NaN 74.423 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 59868 40302 734 25475 25486 5 -0.014278412428438969 SEITRSYGNF 10 Unmodified _SEITRSYGNF_ 0 0 0 L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|15|1|anti-sense L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|15|1|anti-sense L1MB4_dup641|chr2:26042785-26043144:+|1.231352919115593|0.0068747788171282|7.48|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 587.2803344726562 2 587.280377 1172.5462 -0.071949 -4.2254E-05 0.24725 0.0001452 0.1753 0.00010295 587.2805250070128 27.733 0.56159 31.499 31.266 31.828 3.7662 74 46 2 0 0 0 0.55148 1 4158 4158 5.2969 0.76802 1 114760 40303 10550 25476 25487 46157 46157 -0.03316954258662008 SEKILSPPV 9 Unmodified _SEKILSPPV_ 0 0 0 REV__L1MA3_dup1514|chr3:81528417-81531741:-|2.5695855537037104|0.4044892111932424|2.67|151.0|233|3|anti-sense REV__L1MA3_dup1514|chr3:81528417-81531741:-|2.5695855537037104|0.4044892111932424|2.67|151.0|233|3|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2868957519531 2 485.2844 968.554247 NaN NaN NaN NaN NaN NaN NaN 42.668 1 46.309 45.809 46.809 3.6415 0 0 0 0.39598 1 7845 7845 1.6526 0 1 + 40304 24977 25477 25488 46158 46158 0.06871224728763536 SEKKNGKKI 9 Unmodified _SEKKNGKKI_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|118|2|sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|118|2|sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|118|2|sense MSMS UPN48_class_I_Rep_2 6 516.3118896484375 2 516.314023 1030.61349 NaN NaN NaN NaN NaN NaN NaN 37.905 1 41.621 41.121 42.121 3.7164 0 0 0 0.39518 1 6541 6541 1.8442 0 1 40305 13655 25478 25489 46159 46159 0.0994112074295117 SEKKSSYF 8 Unmodified _SEKKSSYF_ 0 0 0 L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|74|2|anti-sense L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|74|2|anti-sense L1MEf_dup10651|chr17:73018859-73020005:+|1.1267927742535362|0.0066629584416196|7.4|151.0|74|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.2431335449219 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 20.336 1 20.336 19.836 20.836 0 0 0 0 0.40738 1 2096 2096 0.79363 0 1 40306 13233 25479 25490 46160 46160 -0.01734511719087095 SEKLDSDDL 9 Unmodified _SEKLDSDDL_ 0 0 0 ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA ENSG00000063169|ENST00000594866|BICRA MSMS UPN47_class_I_Rep_3 4 511.27410888671875 2 511.237844 1020.46113 NaN NaN NaN NaN NaN NaN NaN 34.184 1 37.459 36.959 37.959 3.2748 0 0 0 0.39598 1 6185 6185 1.6526 0.17072 1 40307 980 25480 25491 46161 46161 -0.04827744515137056 SEKLRKAF 8 Unmodified _SEKLRKAF_ 0 0 0 nc|ENSG00000269791|O60224-2|SSX4;ENSG00000269791|ENST00000595235|SSX4B;ENSG00000268009|ENST00000595689|SSX4 nc|ENSG00000269791|O60224-2|SSX4 nc|ENSG00000269791|O60224-2|SSX4 MSMS UPN47_class_I_Rep_3 4 489.7886047363281 2 489.790184 977.565815 NaN NaN NaN NaN NaN NaN NaN 66.862 1 70.054 69.554 70.554 3.1914 0 0 0 0.40604 1 16154 16154 2.5775 0 1 40308 5804 25481 25492 46162 46162 0.07613466542750302 SEKRSTGVGV 10 Unmodified _SEKRSTGVGV_ 0 0 0 L1PA3_dup7864|chr11:14844352-14850498:+|3.566494696966521|0.2904596827084137|3.62|151.0|214|1|anti-sense L1PA3_dup7864|chr11:14844352-14850498:+|3.566494696966521|0.2904596827084137|3.62|151.0|214|1|anti-sense L1PA3_dup7864|chr11:14844352-14850498:+|3.566494696966521|0.2904596827084137|3.62|151.0|214|1|anti-sense MSMS UPN47_class_I_Rep_2 3 510.3058776855469 2 510.277638 1018.54072 NaN NaN NaN NaN NaN NaN NaN 75.76 1 79.082 78.582 79.582 3.3216 0 0 0 0.53105 1 18723 18723 3.2813 0.70383 1 40309 14288 25482 25493 46163 46163 0.03219366949531377 SELAIKRMQ 9 Unmodified _SELAIKRMQ_ 0 0 0 REV__ENST00000466342.1_1_5:179250916-179260288:+|nuORF REV__ENST00000466342.1_1_5:179250916-179260288:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 538.2998046875 2 538.300059 1074.58556 -0.0065426 -3.5219E-06 0.0073035 3.9315E-06 0.00076089 4.0959E-07 538.29995129756 33.522 0.89119 36.962 36.64 37.532 3.4398 135 59 3 0 0 0 0.48846 1 6110 6110 1.8442 0 1 308900 + 40310 19900 25483 25494 46164 46164 0.051254744912057504 SELDLISRL 9 Unmodified _SELDLISRL_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS UPN47_class_I_Rep_1 2 523.298583984375 2 523.298039 1044.58152 0.26639 0.0001394 0.74932 0.00039212 1.0157 0.00053152 523.2984193893055 67.594 0.71133 70.956 70.656 71.367 3.3611 110 55 3 0 0 0 0.01093 1 16266 16266 69.338 21.744 1 319550 40311 1528 25484 25495 46165 46165 0.06101708269147821 SELDLISRL 9 Unmodified _SELDLISRL_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 MULTI-SECPEP UPN47_class_I_Rep_3 4 523.2987060546875 2 523.298039 1044.58152 0.33197 0.00017372 1.0815 0.00056596 1.4135 0.00073969 523.2986637658863 67.872 0.4975 71.064 70.837 71.334 3.1914 53 40 3 0 0 0 0.010459 1 16468 16468 78.06 28.506 1 216210 40312 1528 25484 25495 46166 46166 0.06101708269147821 SELDLISRL 9 Unmodified _SELDLISRL_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 523.298039 1044.58152 0.47498 0.00024856 -1.816 -0.00095031 -1.341 -0.00070176 523.79829468364 67.517 0.11526 71.024 70.981 71.096 3.5077 0.009891 -0.0027325 NaN 78.06 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 217490 40313 1528 25484 25495 0.06101708269147821 SELEDKKVEE 10 Unmodified _SELEDKKVEE_ 0 0 0 nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;ENSG00000135241|ENST00000257694|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 MSMS UPN47_class_I_Rep_3 4 603.2977905273438 2 603.298433 1204.58231 NaN NaN NaN NaN NaN NaN NaN 70.698 1 73.909 73.409 74.409 3.2113 0 0 0 0.53105 1 17310 17310 1.3295 0.13619 1 40314 2890 25485 25496 46167 46167 -0.011795418724432238 SELELWAQ 8 Unmodified _SELELWAQ_ 0 0 0 REV__ENST00000482818.1_1_22:29726183-29727937:-|nuORF REV__ENST00000482818.1_1_22:29726183-29727937:-|nuORF MSMS UPN48_class_I_Rep_3 7 488.2431945800781 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 35.16 1 38.832 38.332 39.332 3.6721 0 0 0 0.40604 1 5668 5668 2.5775 0 1 + 40315 22578 25486 25497 46168 46168 -0.017345117190984638 SELENYLFY 9 Unmodified _SELENYLFY_ 0 0 0 REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.2750854492188 2 589.274229 1176.53391 0.39195 0.00023097 0.27689 0.00016317 0.66885 0.00039413 589.2742684686572 75.305 0.58287 78.708 78.441 79.024 3.4034 117 52 3 0 0 0 0.041849 3 18555 18555;18592;18630 52.268 12.311 1 226670 + 40316 32453 25487 25498 46169;46170;46171 46169 -0.04729990721716604 SELENYLFY 9 Unmodified _SELENYLFY_ 0 0 0 REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 589.7759399414062 2 589.274229 1176.53391 0.39195 0.00023097 0.27689 0.00016317 0.66885 0.00039413 589.2742684686572 75.305 0.58287 78.708 78.441 79.024 3.4034 117 52 3 0 0 0 0.040444 1 18630 18630 52.268 12.311 1 226670 + 40317 32453 25487 25498 46172 46172 -0.04729990721716604 SELENYLFY 9 Unmodified _SELENYLFY_ 0 0 0 REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.27490234375 2 589.274229 1176.53391 0.45872 0.00027031 0.21917 0.00012915 0.67788 0.00039946 589.2741722019534 75.453 0.55025 78.765 78.489 79.039 3.3127 122 51 3 0 0 0 0.023254 4 18656 18578;18619;18656;18693 61.357 13.012 1 223060 + 40318 32453 25487 25498 46173;46174;46175;46176 46175 -0.04729990721716604 SELENYLFY 9 Unmodified _SELENYLFY_ 0 0 0 REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.275146484375 2 589.274229 1176.53391 0.46171 0.00027207 0.26121 0.00015392 0.72292 0.000426 589.2742818349328 75.523 0.59861 78.78 78.504 79.103 3.2573 76 53 2 0 0 0 0.041849 5 18679 18679;18693;18731;18769;18810 52.268 12.311 1 180410 + 40319 32453 25487 25498 46177;46178;46179;46180;46181 46177 -0.04729990721716604 SELENYLFY 9 Unmodified _SELENYLFY_ 0 0 0 REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense REV__Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|114|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 589.7763061523438 2 589.274229 1176.53391 0.46171 0.00027207 0.26121 0.00015392 0.72292 0.000426 589.2742818349328 75.523 0.59861 78.78 78.504 79.103 3.2573 76 53 2 0 0 0 0.044326 1 18769 18769 43.858 7.3921 1 180410 + 40320 32453 25487 25498 46182 46182 -0.04729990721716604 SELISTRF 8 Unmodified _SELISTRF_ 0 0 0 ENSG00000119801|ENST00000261353|YPEL5 ENSG00000119801|ENST00000261353|YPEL5 ENSG00000119801|ENST00000261353|YPEL5 MSMS UPN46_class_I_Rep_3 1 476.75860595703125 2 476.758549 951.502546 NaN NaN NaN NaN NaN NaN NaN 52.635 1 52.635 52.135 53.135 0 0 0 0 0.30631 1 11265 11265 31.268 7.2478 1 40321 2298 25488 25499 46183 46183 0.024854810348642786 SELLHTVL 8 Unmodified _SELLHTVL_ 0 0 0 MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|10|2|sense MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|10|2|sense MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.2633361816406 2 456.263468 910.512382 0.059077 2.6955E-05 -0.21117 -9.6349E-05 -0.15209 -6.9394E-05 456.26332642960017 56.683 0.6199 60.141 60.101 60.721 3.4572 89 55 2 0 0 0 0.82752 1 13012 13012 26.341 0 1 903040 40322 15741 25489 25500 46184 46184 0.053546690402299646 SELLHTVL 8 Unmodified _SELLHTVL_ 0 0 0 MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|10|2|sense MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|10|2|sense MamRep137_dup1597|chr12:4296830-4297175:+|1.381449836339638|0.1132942967838929|3.61|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.2633361816406 2 456.263468 910.512382 -0.24061 -0.00010978 0.32572 0.00014862 0.085114 3.8835E-05 456.26350685802765 56.965 0.91532 60.137 59.779 60.694 3.1721 174 76 3 0 0 0 0.82752 2 13088 13088;13122 26.341 0 1 705610 40323 15741 25489 25500 46185;46186 46185 0.053546690402299646 SELQREGDW 9 Unmodified _SELQREGDW_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-2|PIGT MULTI-MSMS UPN47_class_I_Rep_1 2 560.2564697265625 2 560.256902 1118.49925 -0.036978 -2.0717E-05 -0.65774 -0.0003685 -0.69472 -0.00038922 560.2565996315958 34.776 0.83196 38.462 38.229 39.061 3.6859 78 64 2 0 0 0 0.42249 1 6302 6302 6.7232 6.7232 1 147390 40324 16677 25490 25501 46187 46187 -0.05525813809799729 SELQREGDW 9 Unmodified _SELQREGDW_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-2|PIGT MULTI-MSMS UPN47_class_I_Rep_2 3 560.2564086914062 2 560.256902 1118.49925 0.045797 2.5658E-05 -0.58319 -0.00032674 -0.53739 -0.00030108 560.2565493230983 35.099 0.69218 38.524 38.177 38.869 3.4253 84 47 2 0 0 0 0.46869 1 6405 6405 3.9444 0.3479 1 162410 40325 16677 25490 25501 46188 46188 -0.05525813809799729 SELQREGDW 9 Unmodified _SELQREGDW_ 0 0 0 nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-2|PIGT MULTI-MSMS UPN47_class_I_Rep_3 4 560.2567138671875 2 560.256902 1118.49925 -0.10718 -6.005E-05 -0.56638 -0.00031732 -0.67356 -0.00037737 560.2566287561432 35.226 0.72981 38.49 38.162 38.892 3.2639 106 50 3 0 0 0 0.47197 1 6508 6508 3.5965 0.31518 1 151090 40326 16677 25490 25501 46189 46189 -0.05525813809799729 SELQSQQWT 9 Unmodified _SELQSQQWT_ 0 0 0 Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|160|3|anti-sense Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|160|3|anti-sense Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|160|3|anti-sense MSMS UPN47_class_I_Rep_2 3 553.76025390625 2 553.759278 1105.504 NaN NaN NaN NaN NaN NaN NaN 23.251 1 26.695 26.195 27.195 3.4447 0 0 0 0.38916 1 2899 2899 3.2813 0 1 40327 33081 25491 25502 46190 46190 -0.04452929667036187 SELQVLLGY 9 Unmodified _SELQVLLGY_ 0 0 0 ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|1|intron;ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|5|intron;ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|4|intron;ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|3|intron;ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|2|intron;ENSG00000033800.14,PIAS1,chr15,+,I9.1,68142340,68145815|24|11.09|1|intron;nc|ENSG00000033800|O75925-3|PIAS1;ENSG00000033800.14,PIAS1,chr15,+,I13.1,68164805,68173731|27|10.65|4|intron;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1 ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|1|intron ENSG00000033800.14,PIAS1,chr15,+,I6.1,68086751,68087841|24|9.42|1|intron MSMS UPN47_class_I_Rep_3 4 511.28192138671875 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 80.416 1 83.725 83.225 84.225 3.309 0 0 0 0.078496 1 20121 20121 29.082 8.628 1 40328 843 25492 25503 46191 46191 0.03970920866152028 SELSQNLGF 9 Unmodified _SELSQNLGF_ 0 0 0 MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.7455749511719 2 497.745639 993.476725 0.18868 9.3913E-05 -0.14852 -7.3925E-05 0.040157 1.9988E-05 497.745522499163 61.09 0.49974 64.472 64.209 64.708 3.3815 68 40 2 0 0 0 0.1249 1 14301 14301 29.082 1.4528 1 124900 40329 16323 25493 25504 46192 46192 -0.020274132074177942 SELSQNLGF 9 Unmodified _SELSQNLGF_ 0 0 0 MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.74603271484375 2 497.745639 993.476725 0.26316 0.00013099 -0.25823 -0.00012854 0.0049229 2.4503E-06 497.745454742229 61.25 0.55859 64.515 64.351 64.909 3.2654 55 35 2 0 0 0 0.17897 2 14366 14366;14416 22.736 1.1993 1 187950 40330 16323 25493 25504 46193;46194 46193 -0.020274132074177942 SELSQNLGF 9 Unmodified _SELSQNLGF_ 0 0 0 MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MLT1C-int_dup60|chr2:210068590-210069513:-|1.6147689536677805|0.2190945196326437|2.88|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.7454833984375 2 497.745639 993.476725 0.16645 8.2849E-05 -0.092431 -4.6007E-05 0.074017 3.6842E-05 497.74554563599713 61.242 0.55524 64.407 64.238 64.794 3.1651 77 44 2 0 0 0 0.17897 1 14446 14446 22.736 1.1993 1 182070 40331 16323 25493 25504 46195 46195 -0.020274132074177942 SELTQQQPGW 10 Unmodified _SELTQQQPGW_ 0 0 0 REV__ENST00000225394.7_1_17:27901080-27901281:-|nuORF REV__ENST00000225394.7_1_17:27901080-27901281:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 587.2802734375 2 587.280377 1172.5462 -0.2124 -0.00012474 0.22656 0.00013306 0.014165 8.3186E-06 587.280382725925 28.097 0.53495 31.431 31.117 31.652 3.3337 82 44 2 0 0 0 0.56333 1 4413 4413 1.4819 0.79152 1 119420 + 40332 21486 25494 25505 46196 46196 -0.03316954258662008 SELWLCHCT 9 Unmodified _SELWLCHCT_ 0 0 0 AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|8|2|sense AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|8|2|sense AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 546.3138427734375 2 546.23607 1090.45759 0.013016 7.1098E-06 -0.89385 -0.00048825 -0.88083 -0.00048114 546.2355318358071 38.813 0.54093 42.478 42.294 42.835 3.6652 38 33 2 0 0 0 0.12099 1 7564 7564 6.7232 3.4419 1 55643 40333 48 25495 25506 46197 46197 -0.08402409094333052 SELWLCHCT 9 Unmodified _SELWLCHCT_ 0 0 0 AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|8|2|sense AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|8|2|sense AluJb_dup43205|chr6:75638775-75639064:+|1.1663866997538517|0.1614813092866013|2.85|150.0|8|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 546.3140869140625 2 546.23607 1090.45759 0.01839 1.0046E-05 -0.42428 -0.00023176 -0.40589 -0.00022171 546.235358951651 39.216 0.52945 42.594 42.31 42.839 3.3785 34 28 2 0 0 0 0.12321 1 7727 7727 3.9444 3.9444 1 73738 40334 48 25495 25506 46198 46198 -0.08402409094333052 SEMPCPERK 9 Unmodified _SEMPCPERK_ 0 0 0 L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|383|3|anti-sense;L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|215|3|anti-sense;L1PA8_dup4901|chrX:77750519-77756789:-|3.506166607321925|0.2027144389296426|4.11|151.0|385|3|anti-sense;L1PA7_dup2613|chr3:152419725-152421236:+|13.057653960836232|0.1949154023939628|6.07|151.0|59|1|anti-sense L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|383|3|anti-sense L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|383|3|anti-sense MSMS UPN48_class_I_Rep_2 6 538.7448120117188 2 538.746802 1075.47905 NaN NaN NaN NaN NaN NaN NaN 21.084 1 24.732 24.232 25.232 3.648 0 0 0 0.39598 1 1930 1930 1.6526 0 1 40335 14784 25496 25507 46199 46199 -0.05567024065635451 SEPDFVAKFY 10 Unmodified _SEPDFVAKFY_ 0 0 0 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS UPN47_class_I_Rep_1 2 601.7901611328125 2 601.790047 1201.56554 0.4122 0.00024806 0.10302 6.1996E-05 0.51522 0.00031005 601.7899759467418 62.167 0.90869 65.535 65.1 66.009 3.3681 147 61 3 0 0 0 0.20659 2 14630 14630;14671 59.368 42.255 1 421440 40336 4876 25497 25508 46200;46201 46200 -0.02717997967761221 SEPDFVAKFY 10 Unmodified _SEPDFVAKFY_ 0 0 0 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS UPN47_class_I_Rep_2 3 601.7904052734375 2 601.790047 1201.56554 0.44126 0.00026554 0.11062 6.6569E-05 0.55187 0.00033211 601.7899744873348 62.413 0.92324 65.673 65.256 66.179 3.2594 135 59 3 0 0 0 0.18503 3 14735 14735;14773;14813 61.602 44.489 1 324680 40337 4876 25497 25508 46202;46203;46204 46202 -0.02717997967761221 SEPDFVAKFY 10 Unmodified _SEPDFVAKFY_ 0 0 0 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS UPN47_class_I_Rep_3 4 601.7901611328125 2 601.790047 1201.56554 0.40857 0.00024587 0.094565 5.6908E-05 0.50313 0.00030278 601.790091127031 62.423 1.0049 65.589 65.216 66.221 3.1667 153 62 3 0 0 0 0.1211 2 14798 14798;14851 76.825 50.557 1 369690 40338 4876 25497 25508 46205;46206 46205 -0.02717997967761221 SEPKSSTTFF 10 Unmodified _SEPKSSTTFF_ 0 0 0 REV__MER21A_dup1134|chrX:56738288-56739214:-|1.034160805273036|0.1139278123131801|3.18|150.0|65|3|anti-sense REV__MER21A_dup1134|chrX:56738288-56739214:-|1.034160805273036|0.1139278123131801|3.18|150.0|65|3|anti-sense MSMS UPN47_class_I_Rep_1 2 565.7723999023438 2 565.771854 1129.52915 NaN NaN NaN NaN NaN NaN NaN 44.176 1 47.871 47.371 48.371 3.6951 0 0 0 0.53105 1 9159 9159 2.4985 0.19575 1 + 40339 31178 25498 25509 46207 46207 -0.030428748644681036 SEPPRENRI 9 Unmodified _SEPPRENRI_ 0 0 0 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 MSMS UPN48_class_I_Rep_2 6 549.3013305664062 2 549.288537 1096.56252 NaN NaN NaN NaN NaN NaN NaN 100.47 1 104.21 103.71 104.71 3.7417 0 0 0 0.32573 1 23859 23859 9.3831 0 1 40340 5627 25499 25510 46208 46208 0.018101716980936544 SEQAHGVPFS 10 Unmodified _SEQAHGVPFS_ 0 0 0 ENSG00000105321|ENST00000221922|CCDC9 ENSG00000105321|ENST00000221922|CCDC9 ENSG00000105321|ENST00000221922|CCDC9 MSMS UPN47_class_I_Rep_1 2 529.748291015625 2 529.748713 1057.48287 NaN NaN NaN NaN NaN NaN NaN 33.006 1 36.719 36.219 37.219 3.7131 0 0 0 0.53105 1 5756 5756 2.9952 0.69251 1 40341 1730 25500 25511 46209 46209 -0.04356894975899195 SEQFTAMF 8 Oxidation (M) _SEQFTAM(Oxidation (M))F_ SEQFTAM(1)F SEQFTAM(52)F 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000445286.3_1_12:38597181-38597481:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000402141.1_1_6:143757385-143757844:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN46_class_I_Rep_3 1 489.2091064453125 2 488.707668 975.400783 0.21165 0.00010344 0.22975 0.00011228 0.4414 0.00021572 488.7076725433879 59.59 0.37496 59.59 59.328 59.703 0 71 41 2 0 0 0 0.82752 2 13140 13140;13184 65.235 27.084 1 350370 40342 5222;5291;5787 25501 25512 46210;46211 46210 160;174 -0.08790133379193321 SEQHDQHVY 9 Unmodified _SEQHDQHVY_ 0 0 0 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS UPN47_class_I_Rep_1 2 571.7457885742188 2 571.746702 1141.47885 -0.14273 -8.1604E-05 -0.45112 -0.00025792 -0.59384 -0.00033953 571.7463318976285 14.088 0.25537 17.563 17.458 17.713 3.475 43 30 2 0 0 0 0.47493 2 469 469;500 3.2813 0.54611 1 55626 40343 3948 25502 25513 46212;46213 46212 -0.08622984469616313 SEQHDQHVY 9 Unmodified _SEQHDQHVY_ 0 0 0 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS UPN47_class_I_Rep_2 3 571.7465209960938 2 571.746702 1141.47885 0.048392 2.7668E-05 -0.20667 -0.00011816 -0.15828 -9.0493E-05 571.7463454765214 14.176 0.27944 17.563 17.468 17.747 3.3871 48 32 2 0 0 0 0.47763 1 527 527 2.9952 0.26005 1 38998 40344 3948 25502 25513 46214 46214 -0.08622984469616313 SEQIQKLL 8 Unmodified _SEQIQKLL_ 0 0 0 nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;COL6A3|p.G3016Rfs*6|1|0.12|ENSG00000163359|chr2:237334809-237334810|-/G|frameshift_variant;ENSG00000163359|ENST00000295550|COL6A3 nc|ENSG00000163359|P12111-3|COL6A3 nc|ENSG00000163359|P12111-3|COL6A3 MULTI-MSMS UPN48_class_I_Rep_3 7 479.7824401855469 2 479.782025 957.549496 0.1089 5.2251E-05 0.01618 7.7628E-06 0.12508 6.0013E-05 479.78196923381535 55.723 0.50029 59.278 59.012 59.512 3.5554 55 34 2 0 0 0 0.82752 1 11808 11808 7.2892 0 1 183970 40345 625 25503 25514 46215 46215 0.06902340586009359 SEQLKTTF 8 Unmodified _SEQLKTTF_ 0 0 0 REV__L1MB7_dup5821|chr4:105249325-105250380:-|1.253622289370875|0.0505824815845467|4.63|151.0|14|2|sense REV__L1MB7_dup5821|chr4:105249325-105250380:-|1.253622289370875|0.0505824815845467|4.63|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 477.25140380859375 2 477.250557 952.486562 -0.48279 -0.00023041 0.22053 0.00010525 -0.26226 -0.00012517 477.25056275471275 36.192 0.48126 39.447 39.184 39.665 3.2547 51 32 2 0 0 0 0.82752 1 6779 6779 25.399 0 1 57224 + 40346 26287 25504 25515 46216 46216 0.008417747979365231 SEQLLWLYQ 9 Unmodified _SEQLLWLYQ_ 0 0 0 REV__ENST00000580193.1_1_18:14630000-14630792:-|nuORF REV__ENST00000580193.1_1_18:14630000-14630792:-|nuORF MSMS UPN48_class_I_Rep_2 6 590.7069702148438 2 590.305864 1178.59717 NaN NaN NaN NaN NaN NaN NaN 36.78 1 40.482 39.982 40.982 3.7021 0 0 0 0.39518 1 6219 6219 1.8442 0 1 + 40347 22352 25505 25516 46217 46217 0.015019947861901528 SEQVRRKFK 9 Unmodified _SEQVRRKFK_ 0 0 0 REV__ENST00000585852.5_1_17:43309778-43311670:+|nuORF REV__ENST00000585852.5_1_17:43309778-43311670:+|nuORF MSMS UPN46_class_I_Rep_3 1 589.343994140625 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 85.826 1 85.826 85.326 86.326 0 0 0 0 0.4007 1 20496 20496 0.52476 0 1 + 40348 23143 25506 25517 46218 46218 0.09147016757128767 SEQVRRKFK 9 Unmodified _SEQVRRKFK_ 0 0 0 REV__ENST00000585852.5_1_17:43309778-43311670:+|nuORF REV__ENST00000585852.5_1_17:43309778-43311670:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 589.3444213867188 2 589.343646 1176.67274 0.46205 0.00027231 -0.87622 -0.00051639 -0.41417 -0.00024409 589.3430117753023 86.907 0.23961 90.544 90.48 90.72 3.6372 44 30 2 0 0 0 0.50088 1 21731 21731 0.52476 0 1 77940 + 40349 23143 25506 25517 46219 46219 0.09147016757128767 SERLEQELF 9 Unmodified _SERLEQELF_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MULTI-MSMS UPN48_class_I_Rep_1 5 575.7907104492188 2 575.790578 1149.5666 0.54689 0.00031489 0.35651 0.00020527 0.90339 0.00052016 575.79063441806 59.284 0.70879 62.764 62.513 63.221 3.4801 89 44 3 0 0 0 0.15547 1 13049 13049 24.991 0 1 329820 40350 1027 25507 25518 46220 46220 -0.002197835988681618 SERLEQELF 9 Unmodified _SERLEQELF_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MULTI-MSMS UPN48_class_I_Rep_2 6 575.7908325195312 2 575.790578 1149.5666 0.56152 0.00032332 0.4659 0.00026826 1.0274 0.00059158 575.7906615238765 59.358 0.61837 62.845 62.49 63.108 3.4868 101 41 3 0 0 0 0.13244 1 13066 13066 27.629 0 1 399950 40351 1027 25507 25518 46221 46221 -0.002197835988681618 SERLEQELF 9 Unmodified _SERLEQELF_ 0 0 0 nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF nc|ENSG00000067048|O15523-2|DDX3Y nc|ENSG00000067048|O15523-2|DDX3Y MULTI-MSMS UPN48_class_I_Rep_3 7 575.7908935546875 2 575.790578 1149.5666 0.43921 0.00025289 0.24624 0.00014178 0.68545 0.00039468 575.7906692781484 59.179 0.63652 62.702 62.387 63.023 3.5231 67 42 2 0 0 0 0.19147 2 12911 12911;12963 21.537 0 1 325040 40352 1027 25507 25518 46222;46223 46222 -0.002197835988681618 SERLIWFW 8 Unmodified _SERLIWFW_ 0 0 0 REV__L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|320|3|anti-sense REV__L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|320|3|anti-sense MSMS UPN47_class_I_Rep_3 4 569.2567138671875 2 568.798009 1135.58147 NaN NaN NaN NaN NaN NaN NaN 67.497 1 70.689 70.189 71.189 3.1914 0 0 0 0.40738 1 16346 16346 0.79363 0.10326 1 + 40353 30182 25508 25519 46224 46224 0.01909753059794639 SERRQRLRW 9 Unmodified _SERRQRLRW_ 0 0 0 ENST00000467933.1_1:144013948-144053555:+|nuORF ENST00000467933.1_1:144013948-144053555:+|nuORF ENST00000467933.1_1:144013948-144053555:+|nuORF MSMS UPN48_class_I_Rep_3 7 643.8612060546875 2 643.863069 1285.71158 NaN NaN NaN NaN NaN NaN NaN 49.19 1 52.82 52.32 53.32 3.6291 0 0 0 0.39518 1 9848 9848 1.8442 0.51471 1 40354 6911 25509 25520 46225 46225 0.08015742111501822 SERRVKRNKKW 11 Unmodified _SERRVKRNKKW_ 0 0 0 ENST00000592288.5_2_18:31158582-31224899:+|nuORF ENST00000592288.5_2_18:31158582-31224899:+|nuORF ENST00000592288.5_2_18:31158582-31224899:+|nuORF MSMS UPN47_class_I_Rep_2 3 496.29541015625 3 496.295297 1485.86406 NaN NaN NaN NaN NaN NaN NaN 115.1 1 118.6 118.1 119.1 3.5039 0 0 0 0.38417 1 28053 28053 0.094841 0 1 40355 7627 25510 25521 46226 46226 0.14056517788253586 SERRWGMH 8 Unmodified _SERRWGMH_ 0 0 0 REV__ENST00000380599.8_1_17:7364268-7364400:-|nuORF REV__ENST00000380599.8_1_17:7364268-7364400:-|nuORF MSMS UPN47_class_I_Rep_2 3 529.74951171875 2 529.751067 1057.48758 NaN NaN NaN NaN NaN NaN NaN 32.911 1 36.366 35.866 36.866 3.4547 0 0 0 0.40604 1 5763 5763 2.5775 0.73324 1 + 40356 22049 25511 25522 46227 46227 -0.03886289314118585 SESAQSKML 9 Oxidation (M) _SESAQSKM(Oxidation (M))L_ SESAQSKM(1)L SESAQSKM(120)L 0 0 1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN47_class_I_Rep_1 2 498.73651123046875 2 498.736957 995.459361 -0.32908 -0.00016412 -0.065099 -3.2467E-05 -0.39417 -0.00019659 498.7368017964225 14.889 0.94829 18.364 18.128 19.076 3.475 189 109 3 0 0 0 0.0069835 2 694 662;694 121.53 67.701 1 332400 40357 5281;4858;16763 25512 25523 46228;46229 46229 154 -0.03855076804734381 SESAQSKML 9 Oxidation (M) _SESAQSKM(Oxidation (M))L_ SESAQSKM(1)L SESAQSKM(130)L 0 0 1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN47_class_I_Rep_2 3 498.7366943359375 2 498.736957 995.459361 -0.16378 -8.1685E-05 -0.32391 -0.00016155 -0.4877 -0.00024323 498.7366996954108 15.021 0.87176 18.407 18.15 19.021 3.3864 206 99 3 0 0 0 0.0064536 2 693 693;729 133.05 79.219 1 347090 40358 5281;4858;16763 25512 25523 46230;46231 46230 154 -0.03855076804734381 SESAQSKML 9 Oxidation (M) _SESAQSKM(Oxidation (M))L_ SESAQSKM(1)L SESAQSKM(89)L 0 0 1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN47_class_I_Rep_3 4 498.7366943359375 2 498.736957 995.459361 -0.6287 -0.00031356 0.15171 7.5665E-05 -0.47698 -0.00023789 498.7369483696737 14.969 1.0167 18.335 18.084 19.1 3.3659 231 116 4 0 0 0 0.0063213 2 681 654;681 136.39 82.559 1 329300 40359 5281;4858;16763 25512 25523 46232;46233 46233 154 -0.03855076804734381 SESAQSKML 9 Unmodified _SESAQSKML_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN47_class_I_Rep_1 2 490.7389221191406 2 490.739499 979.464446 -0.32372 -0.00015886 -0.30606 -0.00015019 -0.62977 -0.00030906 490.73944630213055 23.023 0.61999 26.727 26.468 27.088 3.7042 86 56 2 0 0 0 0.38714 2 2780 2780;2814 8.7454 0.15213 1 87681 40360 5281;4858;16763 25512 25524 46234;46235 46234 -0.026107729421141812 SESAQSKML 9 Unmodified _SESAQSKML_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN47_class_I_Rep_2 3 490.73858642578125 2 490.739499 979.464446 -0.10381 -5.0945E-05 -0.38692 -0.00018987 -0.49073 -0.00024082 490.7393429027678 23.288 0.6464 26.733 26.403 27.049 3.4447 114 60 3 0 0 0 0.32682 4 2862 2846;2862;2901;2934 12.241 2.8932 1 84429 40361 5281;4858;16763 25512 25524 46236;46237;46238;46239 46237 -0.026107729421141812 SESAQSKML 9 Unmodified _SESAQSKML_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;nc|ENSG00000179344|P01920|HLA-DQB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS UPN47_class_I_Rep_3 4 490.73907470703125 2 490.739499 979.464446 -0.52991 -0.00026005 0.11775 5.7785E-05 -0.41216 -0.00020226 490.7395966850956 23.381 0.58373 26.731 26.487 27.07 3.3503 69 45 2 0 0 0 0.33908 3 2944 2905;2944;2949 11.495 2.9014 1 79062 40362 5281;4858;16763 25512 25524 46240;46241;46242 46241 -0.026107729421141812 SESFLDVANF 10 Unmodified _SESFLDVANF_ 0 0 0 REV__ENST00000504087.5_1_4:125632077-125632134:-|nuORF REV__ENST00000504087.5_1_4:125632077-125632134:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 564.7642211914062 2 564.764029 1127.5135 0.47767 0.00026977 -0.10395 -5.8709E-05 0.37371 0.00021106 564.7639454267014 77.509 0.52951 80.84 80.597 81.127 3.3315 85 54 2 0 0 0 0.36464 1 19216 19216 22.736 4.5899 1 165670 + 40363 22700 25513 25525 46243 46243 -0.045151613815278324 SESFLDVANF 10 Unmodified _SESFLDVANF_ 0 0 0 REV__ENST00000504087.5_1_4:125632077-125632134:-|nuORF REV__ENST00000504087.5_1_4:125632077-125632134:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 564.7632446289062 2 564.764029 1127.5135 0.46335 0.00026168 -0.40305 -0.00022763 0.060297 3.4053E-05 564.7636840244788 77.59 0.63419 80.859 80.506 81.14 3.269 104 67 2 0 0 0 0.36464 1 19299 19299 22.736 8.8302 1 119460 + 40364 22700 25513 25525 46244 46244 -0.045151613815278324 SESKTFVSIL 10 Unmodified _SESKTFVSIL_ 0 0 0 MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|2|1|sense MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|2|1|sense MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 555.7826538085938 2 555.805697 1109.59684 NaN NaN NaN NaN NaN NaN NaN 111.12 1 114.69 114.19 115.19 3.572 0 0 0 0.53105 1 27400 27400 1.4819 0 1 40365 15997 25514 25526 46245 46245 0.046425750663502185 SESLFVSNHAY 11 Unmodified _SESLFVSNHAY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN47_class_I_Rep_1 2 627.2936401367188 2 627.293485 1252.57242 0.20734 0.00013006 0.093504 5.8655E-05 0.30084 0.00018872 627.2935042127175 46.949 0.61848 50.645 50.308 50.926 3.6951 73 37 3 0 0 0 0.15998 4 10000 9954;10000;10040;10094 46.475 36.931 1 180140 40366 3556 25515 25527 46246;46247;46248;46249 46247 -0.04376685087163423 SESLFVSNHAY 11 Unmodified _SESLFVSNHAY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN47_class_I_Rep_2 3 627.29345703125 2 627.293485 1252.57242 0.31266 0.00019613 0.18717 0.00011741 0.49983 0.00031354 627.2935807177261 47.444 0.63103 50.793 50.327 50.958 3.3492 68 44 2 0 0 0 0.29039 3 10145 10105;10145;10187 35.08 26.334 1 119970 40367 3556 25515 25527 46250;46251;46252 46251 -0.04376685087163423 SESLFVSNHAY 11 Unmodified _SESLFVSNHAY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN47_class_I_Rep_3 4 627.2947387695312 2 627.293485 1252.57242 0.35406 0.0002221 0.3791 0.0002378 0.73316 0.00045991 627.2936050817098 47.498 0.41497 50.738 50.392 50.807 3.2405 59 27 3 0 0 0 0.14663 2 10252 10208;10252 53.47 43.926 1 211380 40368 3556 25515 25527 46253;46254 46254 -0.04376685087163423 SESMVTYSK 9 Unmodified _SESMVTYSK_ 0 0 0 REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|7|1|sense REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 516.2386474609375 2 516.239332 1030.46411 NaN NaN NaN NaN NaN NaN NaN 35.747 1 39.423 38.923 39.923 3.6762 0 0 0 0.39598 1 6592 6592 1.6526 0 1 + 40369 27122 25516 25528 46255 46255 -0.0499019266196683 SESNATLRT 9 Unmodified _SESNATLRT_ 0 0 0 ENST00000472823.5_1_6:29595320-29596997:-|nuORF ENST00000472823.5_1_6:29595320-29596997:-|nuORF ENST00000472823.5_1_6:29595320-29596997:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 489.7464294433594 2 489.74617 977.477788 0.11947 5.8511E-05 -0.4072 -0.00019942 -0.28772 -0.00014091 489.74592435930816 18.173 0.66199 21.761 21.467 22.129 3.5874 122 83 2 0 0 0 0.44742 1 1168 1168 5.2969 0 1 63329 40370 6935 25517 25529 46256 46256 -0.011851988385160439 SESPIVVVL 9 Unmodified _SESPIVVVL_ 0 0 0 ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A;ENSG00000166562|ENST00000587834|SEC11C ENST00000585864.1_1_18:56807180-56819918:+|nuORF ENST00000585864.1_1_18:56807180-56819918:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 471.77923583984375 2 471.778951 941.543348 0.1233 5.8168E-05 0.095537 4.5072E-05 0.21883 0.00010324 471.77881186219224 74.13 0.18268 77.62 77.49 77.673 3.49 20 17 2 0 0 0 0.18929 1 17518 17518 21.747 0 1 245540 40371 3185 25518 25530 46257 46257 0.070238223544834 SESSVFLLTL 10 Unmodified _SESSVFLLTL_ 0 0 0 nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5 nc|ENSG00000139292|O75473-3|LGR5 nc|ENSG00000139292|O75473-3|LGR5 MSMS UPN47_class_I_Rep_3 4 548.3005981445312 2 548.300247 1094.58594 NaN NaN NaN NaN NaN NaN NaN 54.054 1 57.24 56.74 57.74 3.1856 0 0 0 0.53105 1 12242 12242 6.2058 0.47393 1 40372 3134 25519 25531 46258 46258 0.04243172692076769 SESTLHRY 8 Unmodified _SESTLHRY_ 0 0 0 nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2353820800781 2 496.743431 991.472308 -0.311 -0.00015449 0.4251 0.00021116 0.11409 5.6676E-05 496.74360463199633 22.841 0.5588 26.545 26.329 26.888 3.7042 81 50 2 0 0 0 0.82752 2 2703 2703;2711 10.183 0 1 103460 40373 3275 25520 25532 46259;46260 46259 -0.023768776303313643 SESTLHRY 8 Unmodified _SESTLHRY_ 0 0 0 nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 MULTI-MSMS UPN47_class_I_Rep_3 4 497.2353820800781 2 496.743431 991.472308 -0.51304 -0.00025485 0.62102 0.00030849 0.10798 5.3639E-05 496.74369167421673 23.096 0.60073 26.446 26.09 26.691 3.3503 75 48 2 0 0 0 0.82752 2 2855 2855;2900 10.183 0 1 86010 40374 3275 25520 25532 46261;46262 46261 -0.023768776303313643 SESVLRLLY 9 Unmodified _SESVLRLLY_ 0 0 0 REV__L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|112|2|anti-sense REV__L1ME1_dup26668|chr16:47267217-47269361:+|1.1852830822272262|0.0877699862214699|3.76|149.0|112|2|anti-sense MSMS UPN47_class_I_Rep_3 4 540.2904052734375 2 540.308406 1078.60226 NaN NaN NaN NaN NaN NaN NaN 60.417 1 63.582 63.082 64.082 3.1651 0 0 0 0.26661 1 14186 14186 12.532 3.1841 1 + 40375 27712 25521 25533 46263 46263 0.0661029864882039 SESVLRLQY 9 Unmodified _SESVLRLQY_ 0 0 0 REV__L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|4|1|sense REV__L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 547.7962646484375 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 30.002 1 33.484 32.984 33.984 3.4821 0 0 0 0.39598 1 4885 4885 1.6526 0 1 + 40376 24027 25522 25534 46264 46264 0.03372824126381602 SETDTDSEIHE 11 Unmodified _SETDTDSEIHE_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS UPN47_class_I_Rep_3 4 631.752197265625 2 631.754586 1261.49462 NaN NaN NaN NaN NaN NaN NaN 59.444 1 62.61 62.11 63.11 3.1651 0 0 0 0.38417 1 13888 13888 1.1933 0.59184 1 40377 2222 25523 25535 46265 46265 -0.1256678753388769 SETELKDTY 9 Unmodified _SETELKDTY_ 0 0 0 nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 nc|ENSG00000175166|Q13200-2|PSMD2 MULTI-MSMS UPN46_class_I_Rep_3 1 543.2531127929688 2 543.253494 1084.49243 0.19182 0.0001042 -0.019325 -1.0499E-05 0.17249 9.3706E-05 543.2533244892032 33.519 0.54018 33.519 33.275 33.815 0 58 43 2 0 0 0 0.16799 1 5872 5872 23.79 6.6769 1 101410 40378 4710 25524 25536 46266 46266 -0.0464317148102964 SETFRSILY 9 Unmodified _SETFRSILY_ 0 0 0 REV__L1M5_dup40897|chr13:21432765-21433120:-|1.2612391342589058|0.0111357293064387|6.82|151.0|6|2|sense REV__L1M5_dup40897|chr13:21432765-21433120:-|1.2612391342589058|0.0111357293064387|6.82|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 558.2925415039062 2 558.290214 1114.56587 NaN NaN NaN NaN NaN NaN NaN 71.756 1 74.974 74.474 75.474 3.2188 0 0 0 0.17222 1 17625 17625 18.146 0 1 + 40379 24672 25525 25537 46267 46267 0.013174217521054743 SETFRSILY 9 Unmodified _SETFRSILY_ 0 0 0 REV__L1M5_dup40897|chr13:21432765-21433120:-|1.2612391342589058|0.0111357293064387|6.82|151.0|6|2|sense REV__L1M5_dup40897|chr13:21432765-21433120:-|1.2612391342589058|0.0111357293064387|6.82|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 558.2832641601562 2 558.290214 1114.56587 NaN NaN NaN NaN NaN NaN NaN 71.807 1 75.026 74.526 75.526 3.2188 0 0 0 0.17222 1 17641 17641 18.146 0 1 + 40380 24672 25525 25537 46268 46268 0.013174217521054743 SETGALKTF 9 Unmodified _SETGALKTF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MSMS UPN47_class_I_Rep_1 2 477.25091552734375 2 477.250557 952.486562 -0.30596 -0.00014602 -0.22241 -0.00010614 -0.52837 -0.00025216 477.25039613647283 35.685 0.49974 39.361 39.155 39.655 3.6762 50 33 2 0 0 0 0.35123 1 6606 6606 10.8 1.4164 1 54782 40381 3898 25526 25538 46269 46269 0.008417747979592605 SETGALKTF 9 Unmodified _SETGALKTF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MSMS UPN47_class_I_Rep_2 3 477.25048828125 2 477.250557 952.486562 -0.25654 -0.00012243 0.30893 0.00014744 0.052393 2.5005E-05 477.25061093522345 35.978 0.55421 39.389 39.178 39.733 3.4114 47 39 2 0 0 0 0.37599 1 6721 6721 9.3831 1.473 1 69223 40382 3898 25526 25538 46270 46270 0.008417747979592605 SETGALKTF 9 Unmodified _SETGALKTF_ 0 0 0 nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF nc|ENSG00000161203|Q96CW1-2|AP2M1 nc|ENSG00000161203|Q96CW1-2|AP2M1 MULTI-MSMS UPN47_class_I_Rep_3 4 477.25018310546875 2 477.250557 952.486562 -0.48279 -0.00023041 0.22053 0.00010525 -0.26226 -0.00012517 477.25056275471275 36.192 0.48126 39.447 39.184 39.665 3.2547 51 32 2 0 0 0 0.10956 1 6792 6792 32.037 12.78 1 57224 40383 3898 25526 25538 46271 46271 0.008417747979592605 SETVKEKTY 9 Unmodified _SETVKEKTY_ 0 0 0 REV__L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|15|2|sense REV__L1M4_dup17529|chr16:55516405-55517042:+|1.862917307545797|0.010398320633967|7.49|150.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.7802734375 2 542.779679 1083.5448 0.0091467 4.9647E-06 -0.1326 -7.1973E-05 -0.12345 -6.7008E-05 542.7796771039809 27.627 0.55355 31.126 30.859 31.412 3.4986 71 42 2 0 0 0 0.46434 1 4119 4119 4.3292 0 1 98954 + 40384 24395 25527 25539 46272 46272 0.0063741165256487875 SETVQHEDY 9 Unmodified _SETVQHEDY_ 0 0 0 REV__ENSG00000169155|ENST00000373464|ZBTB43 REV__ENSG00000169155|ENST00000373464|ZBTB43 MSMS UPN47_class_I_Rep_2 3 554.30517578125 2 554.233093 1106.45163 NaN NaN NaN NaN NaN NaN NaN 39.232 1 42.611 42.111 43.111 3.3785 0 0 0 0.38916 1 7682 7682 3.2813 0 1 + 40385 20300 25528 25540 46273 46273 -0.09733512800653443 SETVQHEDY 9 Unmodified _SETVQHEDY_ 0 0 0 REV__ENSG00000169155|ENST00000373464|ZBTB43 REV__ENSG00000169155|ENST00000373464|ZBTB43 MSMS UPN47_class_I_Rep_3 4 554.2327270507812 2 554.233093 1106.45163 NaN NaN NaN NaN NaN NaN NaN 39.291 1 42.529 42.029 43.029 3.238 0 0 0 0.38916 1 7746 7746 3.2813 0 1 + 40386 20300 25528 25540 46274 46274 -0.09733512800653443 SEVDLTRSF 9 Unmodified _SEVDLTRSF_ 0 0 0 nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 MULTI-MSMS UPN47_class_I_Rep_1 2 527.2643432617188 2 527.264196 1052.51384 0.12174 6.419E-05 -0.20165 -0.00010632 -0.079907 -4.2132E-05 527.2641387496969 47.776 0.57671 51.462 51.302 51.879 3.6857 86 35 3 0 0 0 0.0061843 3 10289 10205;10245;10289 75.571 28.905 1 260650 40387 1542 25529 25541 46275;46276;46277 46277 -0.01031741661677188 SEVDLTRSF 9 Unmodified _SEVDLTRSF_ 0 0 0 nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 MULTI-MSMS UPN47_class_I_Rep_2 3 527.2631225585938 2 527.264196 1052.51384 0.054046 2.8496E-05 -0.39972 -0.00021076 -0.34567 -0.00018226 527.263861712588 48.138 0.60675 51.487 51.232 51.839 3.3492 62 35 3 0 0 0 0.0061843 3 10368 10327;10368;10420 75.571 21.738 1 251760 40388 1542 25529 25541 46278;46279;46280 46279 -0.01031741661677188 SEVDLTRSF 9 Unmodified _SEVDLTRSF_ 0 0 0 nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 nc|ENSG00000100938|Q9P2T1-3|GMPR2 MULTI-MSMS UPN47_class_I_Rep_3 4 527.2636108398438 2 527.264196 1052.51384 0.3083 0.00016256 -0.64803 -0.00034168 -0.33972 -0.00017912 527.2637359592023 48.188 0.68753 51.428 51.22 51.908 3.2405 84 38 3 0 0 0 0.014369 4 10464 10416;10421;10464;10505 67.081 34.295 1 227810 40389 1542 25529 25541 46281;46282;46283;46284 46283 -0.01031741661677188 SEVELEEYY 9 Unmodified _SEVELEEYY_ 0 0 0 ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B ENST00000602204.1_1_19:16980786-16982347:+|nuORF ENST00000602204.1_1_19:16980786-16982347:+|nuORF MSMS UPN48_class_I_Rep_1 5 580.7552490234375 2 580.753327 1159.4921 NaN NaN NaN NaN NaN NaN NaN 38.686 1 42.19 41.69 42.69 3.5048 0 0 0 0.39518 1 6736 6736 1.8442 0 1 40390 2568 25530 25542 46285 46285 -0.08126591200880284 SEVEPPLAYN 10 Unmodified _SEVEPPLAYN_ 0 0 0 REV__L1PA6_dup5165|chr14:85969036-85975196:-|1.2369374337579448|0.0263930768175193|5.55|151.0|234|1|anti-sense REV__L1PA6_dup5165|chr14:85969036-85975196:-|1.2369374337579448|0.0263930768175193|5.55|151.0|234|1|anti-sense MSMS UPN47_class_I_Rep_2 3 559.7708129882812 2 559.771854 1117.52915 NaN NaN NaN NaN NaN NaN NaN 44.058 1 47.416 46.916 47.916 3.358 0 0 0 0.53105 1 9150 9150 3.2813 0.97858 1 + 40391 29931 25531 25543 46286 46286 -0.02490874864452053 SEVFSEKEK 9 Unmodified _SEVFSEKEK_ 0 0 0 L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|74|3|sense L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|74|3|sense L1MEc_dup16663|chr17:61716590-61718737:-|1.2634501792113833|0.0192767970376933|6.03|151.0|74|3|sense MSMS UPN47_class_I_Rep_2 3 541.7716674804688 2 541.771854 1081.52915 NaN NaN NaN NaN NaN NaN NaN 20.874 1 24.281 23.781 24.781 3.4074 0 0 0 0.37891 1 2243 2243 5.7319 0.83484 1 40392 13052 25532 25544 46287 46287 -0.008348748644721127 SEVILHHEY 9 Unmodified _SEVILHHEY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN46_class_I_Rep_3 1 563.77978515625 2 563.780013 1125.54547 0.29963 0.00016893 -0.45395 -0.00025593 -0.15432 -8.7003E-05 563.7798843615416 35.024 0.34783 35.024 34.805 35.153 0 36 26 2 0 0 0 0.1249 2 6275 6275;6320 29.082 19.008 1 81619 40393 3340 25533 25545 46288;46289 46288 -0.012277489077177961 SEVISQYDH 9 Unmodified _SEVISQYDH_ 0 0 0 Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 539.2456665039062 2 539.246003 1076.47745 -0.017842 -9.6211E-06 -0.3447 -0.00018588 -0.36254 -0.0001955 539.2457651785314 38.825 0.70751 42.49 42.208 42.916 3.6652 84 45 2 0 0 0 0.30034 2 7575 7491;7575 13.906 0 1 182230 40394 406 25534 25546 46290;46291 46291 -0.0577261855839879 SEVISQYDH 9 Unmodified _SEVISQYDH_ 0 0 0 Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.2457885742188 2 539.246003 1076.47745 -0.0031182 -1.6815E-06 -0.30594 -0.00016498 -0.30906 -0.00016666 539.2458029179152 39.229 0.743 42.608 42.253 42.996 3.3785 74 41 2 0 0 0 0.36392 1 7726 7726 10.074 0 1 144340 40395 406 25534 25546 46292 46292 -0.0577261855839879 SEVISQYDH 9 Unmodified _SEVISQYDH_ 0 0 0 Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense Arthur1B_dup1136|chr7:92702533-92702836:-|2.336319477146549|0.009556845248278|7.93|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 539.24560546875 2 539.246003 1076.47745 -0.06469 -3.4884E-05 -0.24709 -0.00013324 -0.31178 -0.00016813 539.2458989636608 39.301 0.76028 42.539 42.219 42.979 3.238 112 52 3 0 0 0 0.30034 2 7741 7702;7741 13.906 0 1 180420 40396 406 25534 25546 46293;46294 46294 -0.0577261855839879 SEVKDQFF 8 Unmodified _SEVKDQFF_ 0 0 0 L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|37|2|sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|37|2|sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|37|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.2428894042969 2 500.242732 998.470912 0.28826 0.0001442 -0.048208 -2.4116E-05 0.24006 0.00012009 500.2425649469992 78.334 0.28046 78.334 78.157 78.438 0 61 33 3 0 0 0 0.82752 1 18338 18338 39.957 0.0076237 1 268450 40397 14075 25535 25547 46295 46295 -0.028385117190850906 SEVKDQFF 8 Unmodified _SEVKDQFF_ 0 0 0 L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|37|2|sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|37|2|sense L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|37|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.2427062988281 2 500.242732 998.470912 0.28866 0.0001444 0.28083 0.00014048 0.56949 0.00028488 500.2427834737895 78.572 0.23759 78.572 78.429 78.667 0 37 22 2 0 0 0 0.82752 2 18373 18373;18413 39.957 3.8303 1 442900 40398 14075 25535 25547 46296;46297 46296 -0.028385117190850906 SEVKFTVTF 9 Unmodified _SEVKFTVTF_ 0 0 0 ENSG00000100079|ENST00000215886|LGALS2 ENSG00000100079|ENST00000215886|LGALS2 ENSG00000100079|ENST00000215886|LGALS2 MULTI-MSMS UPN47_class_I_Rep_1 2 529.2821044921875 2 529.281857 1056.54916 0.37156 0.00019666 -0.10402 -5.5057E-05 0.26753 0.0001416 529.2816670198548 59.915 0.44872 63.313 63.025 63.474 3.3982 42 26 2 0 0 0 0.35123 1 13940 13940 10.8 2.0541 1 72356 40399 1470 25536 25548 46298 46298 0.02314920866160719 SEVKFTVTF 9 Unmodified _SEVKFTVTF_ 0 0 0 ENSG00000100079|ENST00000215886|LGALS2 ENSG00000100079|ENST00000215886|LGALS2 ENSG00000100079|ENST00000215886|LGALS2 MULTI-MSMS UPN47_class_I_Rep_3 4 529.2814331054688 2 529.281857 1056.54916 0.30036 0.00015897 -0.31561 -0.00016705 -0.015253 -8.0729E-06 529.2814825323748 60.291 0.37488 63.456 63.243 63.618 3.1651 29 22 2 0 0 0 0.32682 1 14159 14159 12.241 2.1667 1 98994 40400 1470 25536 25548 46299 46299 0.02314920866160719 SEVLPISKLLT 11 Unmodified _SEVLPISKLLT_ 0 0 0 REV__ENST00000498486.1_1_2:172336502-172337621:+|nuORF REV__ENST00000498486.1_1_2:172336502-172337621:+|nuORF MSMS UPN48_class_I_Rep_2 6 400.5806884765625 3 400.579706 1198.71729 NaN NaN NaN NaN NaN NaN NaN 104.52 1 108.22 107.72 108.72 3.6991 0 0 0 0.38417 1 24736 24736 2.2527 1.143 1 + 40401 18581 25537 25549 46300 46300 0.1258798305993878 SEVLQDLRF 9 Unmodified _SEVLQDLRF_ 0 0 0 ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.7977905273438 2 553.795663 1105.57677 0.42123 0.00023328 0.74399 0.00041202 1.1652 0.0006453 553.7961492525152 61.728 0.39509 65.097 64.91 65.305 3.3681 41 28 2 0 0 0 0.14474 4 14466 14463;14466;14506;14523 26.021 10.772 1 131020 40402 710 25538 25550 46301;46302;46303;46304 46302 0.028208241263882883 SEVLQDLRF 9 Unmodified _SEVLQDLRF_ 0 0 0 ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF MSMS UPN47_class_I_Rep_2 3 553.795166015625 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 62.025 1 65.285 64.785 65.785 3.2594 0 0 0 0.18341 1 14619 14619 17.443 8.0595 1 40403 710 25538 25550 46305 46305 0.028208241263882883 SEVLQDLRF 9 Unmodified _SEVLQDLRF_ 0 0 0 ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF MSMS UPN47_class_I_Rep_2 3 553.7969360351562 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 62.065 1 65.324 64.824 65.824 3.2594 0 0 0 0.11743 1 14631 14631 21.59 10.095 1 40404 710 25538 25550 46306 46306 0.028208241263882883 SEVLQDLRF 9 Unmodified _SEVLQDLRF_ 0 0 0 ENST00000600997.5_1_19:18702792-18702987:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF;nc|ENSG00000006015|Q96EN9-3|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000597371.1_1_19:18699887-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF ENST00000600997.5_1_19:18702792-18702987:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.7966918945312 2 553.795663 1105.57677 0.39467 0.00021856 0.21446 0.00011877 0.60913 0.00033733 553.7959476226492 61.93 0.47576 65.096 64.997 65.472 3.1667 59 35 2 0 0 0 0.14474 4 14707 14659;14707;14712;14720 26.021 10.772 1 101190 40405 710 25538 25550 46307;46308;46309;46310 46308 0.028208241263882883 SEVLSYTCS 9 Unmodified _SEVLSYTCS_ 0 0 0 L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|76|1|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|76|1|anti-sense L1PBa_dup138|chr1:247051280-247053351:-|2.023338483075643|0.0414545541789207|5.61|151.0|76|1|anti-sense MSMS UPN47_class_I_Rep_2 3 494.7179260253906 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 44.511 1 47.867 47.367 48.367 3.3556 0 0 0 0.39518 1 9289 9289 1.8442 1.0506 1 40406 15371 25539 25551 46311 46311 -0.07230168070350373 SEVNPQMLQ 9 Unmodified _SEVNPQMLQ_ 0 0 0 nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENSG00000131023|ENST00000543571|LATS1 nc|ENSG00000131023|O95835-2|LATS1 nc|ENSG00000131023|O95835-2|LATS1 MULTI-MSMS UPN47_class_I_Rep_1 2 523.2531127929688 2 523.252774 1044.491 0.40384 0.00021131 0.076838 4.0206E-05 0.48068 0.00025152 523.2527220143363 90.52 0.70369 94.21 93.819 94.523 3.6899 150 93 2 0 0 0 0.36392 1 22648 22648 10.074 0 1 266880 40407 2694 25540 25552 46312 46312 -0.029470840507883622 SEVNPQMLQ 9 Unmodified _SEVNPQMLQ_ 0 0 0 nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENSG00000131023|ENST00000543571|LATS1 nc|ENSG00000131023|O95835-2|LATS1 nc|ENSG00000131023|O95835-2|LATS1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 523.252774 1044.491 0.40384 0.00021131 0.076838 4.0206E-05 0.48068 0.00025152 523.2527220143363 90.52 0.70369 94.21 93.819 94.523 3.6899 0.060477 -9.7364E-05 NaN 10.074 150 93 2 NaN NaN NaN NaN 0 NaN NaN 0 266880 40408 2694 25540 25552 -0.029470840507883622 SEVNPQMLQ 9 Unmodified _SEVNPQMLQ_ 0 0 0 nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENSG00000131023|ENST00000543571|LATS1 nc|ENSG00000131023|O95835-2|LATS1 nc|ENSG00000131023|O95835-2|LATS1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.252774 1044.491 0.18686 9.7774E-05 0.33042 0.00017289 0.51728 0.00027067 523.252865105269 90.634 0.83771 94.091 93.685 94.523 3.4571 -0.058339 0.00016801 NaN 10.074 189 115 2 NaN NaN NaN NaN 0 NaN NaN 0 223960 40409 2694 25540 25552 -0.029470840507883622 SEVNPQMLQ 9 Unmodified _SEVNPQMLQ_ 0 0 0 nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENSG00000131023|ENST00000543571|LATS1 nc|ENSG00000131023|O95835-2|LATS1 nc|ENSG00000131023|O95835-2|LATS1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 523.252774 1044.491 0.38657 0.00020227 -0.06672 -3.4911E-05 0.31985 0.00016736 523.2526713992378 90.746 0.38896 94.147 93.952 94.341 3.401 -0.0021375 -0.0002476 NaN 10.074 79 54 2 NaN NaN NaN NaN 0 NaN NaN 0 118770 40410 2694 25540 25552 -0.029470840507883622 SEVSQRMAL 9 Unmodified _SEVSQRMAL_ 0 0 0 REV__CON__P05784 REV__CON__P05784 MULTI-MSMS UPN48_class_I_Rep_2 6 510.7615051269531 2 510.760766 1019.50698 0.3613 0.00018454 0.56153 0.00028681 0.92283 0.00047135 510.76100530953323 63.646 0.49914 67.12 66.96 67.459 3.4743 49 36 2 0 0 0 0.47493 1 14294 14294 3.2813 0 1 112470 + + 40411 17477 25541 25553 46313 46313 -0.001993778138739799 SEVSQYPPF 9 Unmodified _SEVSQYPPF_ 0 0 0 PABL_B-int_dup19|chr2:73756095-73756930:+|1.644490709449737|0.1531082817706699|3.43|151.0|44|2|anti-sense PABL_B-int_dup19|chr2:73756095-73756930:+|1.644490709449737|0.1531082817706699|3.43|151.0|44|2|anti-sense PABL_B-int_dup19|chr2:73756095-73756930:+|1.644490709449737|0.1531082817706699|3.43|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 527.246826171875 2 527.248015 1052.48148 NaN NaN NaN NaN NaN NaN NaN 29.976 1 33.299 32.799 33.799 3.3235 0 0 0 0.39598 1 4913 4913 1.6526 0 1 40412 16886 25542 25554 46314 46314 -0.042665290646709764 SEWLEPGKFY 10 Unmodified _SEWLEPGKFY_ 0 0 0 REV__ENSG00000164961|ENST00000318410|WASHC5 REV__ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS UPN47_class_I_Rep_2 3 628.8045654296875 2 628.303321 1254.59209 0.47118 0.00029605 -0.052453 -3.2957E-05 0.41873 0.00026309 628.3033232897824 61.096 0.70853 64.362 63.993 64.702 3.2654 107 60 2 0 0 0 0.56078 1 14291 14291 3.2813 0 1 216060 + 40413 20095 25543 25555 46315 46315 -0.025023090764079825 SEYDTPLYF 9 Unmodified _SEYDTPLYF_ 0 0 0 nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3;ENSG00000183576|ENST00000331768|SETD3 nc|ENSG00000183576|Q86TU7-3|SETD3 nc|ENSG00000183576|Q86TU7-3|SETD3 MULTI-MSMS UPN47_class_I_Rep_1 2 567.7528076171875 2 567.75313 1133.49171 0.36455 0.00020697 -1.4303 -0.00081207 -1.0658 -0.0006051 568.2530559410592 72.915 0.62424 76.294 76.03 76.654 3.3799 50 42 2 0 0 0 0.41259 1 17850 17850 7.2892 2.5332 1 71522 40414 5005 25544 25556 46316 46316 -0.0696996613007741 SEYDTPLYF 9 Unmodified _SEYDTPLYF_ 0 0 0 nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3;ENSG00000183576|ENST00000331768|SETD3 nc|ENSG00000183576|Q86TU7-3|SETD3 nc|ENSG00000183576|Q86TU7-3|SETD3 MSMS UPN47_class_I_Rep_2 3 567.7537841796875 2 567.75313 1133.49171 NaN NaN NaN NaN NaN NaN NaN 72.975 1 76.272 75.772 76.772 3.2971 0 0 0 0.28335 1 17917 17917 11.64 4.3511 1 40415 5005 25544 25556 46317 46317 -0.0696996613007741 SFAHLLLGLF 10 Unmodified _SFAHLLLGLF_ 0 0 0 L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|258|2|anti-sense L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|258|2|anti-sense L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|258|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.3240966796875 2 559.32386 1116.63317 0.50852 0.00028443 -0.61264 -0.00034266 -0.10412 -5.8236E-05 559.323475456833 69.272 0.56144 72.727 72.434 72.995 3.4548 57 40 2 0 0 0 0.52083 1 16070 16070 9.3831 0 1 154400 40416 14530 25545 25557 46318 46318 0.07951496753685205 SFAHLLLGLF 10 Unmodified _SFAHLLLGLF_ 0 0 0 L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|258|2|anti-sense L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|258|2|anti-sense L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|258|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.3236083984375 2 559.32386 1116.63317 0.47607 0.00026628 -0.59662 -0.00033371 -0.12055 -6.7429E-05 559.3235664507046 69.104 0.51336 72.613 72.222 72.735 3.5094 65 36 2 0 0 0 0.47413 1 15882 15882 13.906 0 1 142910 40417 14530 25545 25557 46319 46319 0.07951496753685205 SFAHQFAR 8 Unmodified _SFAHQFAR_ 0 0 0 REV__ENSG00000174013|ENST00000311630|FBXO45 REV__ENSG00000174013|ENST00000311630|FBXO45 MSMS UPN47_class_I_Rep_2 3 482.2435607910156 2 482.243401 962.472249 NaN NaN NaN NaN NaN NaN NaN 119.71 1 123.19 122.69 123.69 3.4793 0 0 0 0.40746 1 29334 29334 0.69038 0 1 + 40418 20506 25546 25558 46320 46320 -0.010488328396718316 SFASVVGKKLA 11 Unmodified _SFASVVGKKLA_ 0 0 0 L1MEc_dup18007|chr21:37118752-37119827:-|1.3015736788769088|0.0524514712822879|4.63|151.0|24|2|sense L1MEc_dup18007|chr21:37118752-37119827:-|1.3015736788769088|0.0524514712822879|4.63|151.0|24|2|sense L1MEc_dup18007|chr21:37118752-37119827:-|1.3015736788769088|0.0524514712822879|4.63|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 553.8298950195312 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 83.649 1 83.649 83.149 84.149 0 0 0 0 0.38417 1 19878 19878 1.1933 0.50296 1 40419 13060 25547 25559 46321 46321 0.10094577919835501 SFAVFISSSF 10 Unmodified _SFAVFISSSF_ 0 0 0 REV__L1PA5_dup4028|chr5:142985517-142991590:-|3.694533748661813|0.0980743004189061|5.24|151.0|352|3|anti-sense REV__L1PA5_dup4028|chr5:142985517-142991590:-|3.694533748661813|0.0980743004189061|5.24|151.0|352|3|anti-sense MSMS UPN48_class_I_Rep_3 7 546.2738647460938 2 546.274032 1090.53351 NaN NaN NaN NaN NaN NaN NaN 50.348 1 53.969 53.469 54.469 3.621 0 0 0 0.53105 1 10205 10205 9.3831 0 1 + 40420 29757 25548 25560 46322 46322 -0.008133656509016873 SFAWIYHVL 9 Unmodified _SFAWIYHVL_ 0 0 0 L1MB3_dup12843|chr13:112714768-112715173:-|1.0679929276686797|0.0226944592948466|5.56|151.0|20|1|anti-sense L1MB3_dup12843|chr13:112714768-112715173:-|1.0679929276686797|0.0226944592948466|5.56|151.0|20|1|anti-sense L1MB3_dup12843|chr13:112714768-112715173:-|1.0679929276686797|0.0226944592948466|5.56|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_2 6 568.3109130859375 2 568.300384 1134.58622 NaN NaN NaN NaN NaN NaN NaN 48.199 1 51.936 51.436 52.436 3.7361 0 0 0 0.35339 1 9604 9604 7.9102 0 1 40421 10335 25549 25561 46323 46323 0.02430637202564867 SFCFKLLYN 9 Unmodified _SFCFKLLYN_ 0 0 0 Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.7841796875 2 567.786253 1133.55795 0.46077 0.00026162 -2.7709 -0.0015733 -2.3101 -0.0013117 567.7846166002994 54.903 0.24163 58.411 58.268 58.51 3.5082 24 15 2 0 0 0 0.31407 1 11670 11670 13.042 0.80181 1 92248 40422 33292 25550 25562 46324 46324 -0.0034842876902985154 SFCFKLLYN 9 Unmodified _SFCFKLLYN_ 0 0 0 Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_2 6 567.7831420898438 2 567.786253 1133.55795 NaN NaN NaN NaN NaN NaN NaN 53.452 1 57.061 56.561 57.561 3.6098 0 0 0 0.25702 1 11204 11204 13.042 0.51092 1 40423 33292 25550 25562 46325 46325 -0.0034842876902985154 SFCSSGLIISN 11 Unmodified _SFCSSGLIISN_ 0 0 0 L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|181|3|anti-sense L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|181|3|anti-sense L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|181|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2737426757812 2 564.273706 1126.53286 NaN NaN NaN NaN NaN NaN NaN 114.7 1 118.36 117.86 118.86 3.6616 0 0 0 0.38417 1 27427 27427 0 0 1 40424 8842 25551 25563 46326 46326 -0.025345283622300485 SFCTRKETK 9 Unmodified _SFCTRKETK_ 0 0 0 L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.2815551757812 2 550.281866 1098.54918 0.49041 0.00026987 -0.92407 -0.0005085 -0.43366 -0.00023863 550.2809544091915 92.651 0.12505 96.414 96.333 96.458 3.7629 23 17 2 0 0 0 0.48643 1 22035 22035 2.0598 0 1 100130 40425 10023 25552 25564 46327 46327 0.0038459759448414843 SFCTRKETK 9 Unmodified _SFCTRKETK_ 0 0 0 L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 550.281866 1098.54918 0.40068 0.00022048 -0.79328 -0.00043653 -0.39261 -0.00021604 550.7830912365017 96.028 0.033997 96.028 96.01 96.044 0 -0.19287 7.8483E-05 NaN 2.0598 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 33807 40426 10023 25552 25564 0.0038459759448414843 SFCTRKETK 9 Unmodified _SFCTRKETK_ 0 0 0 L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|7|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 550.281866 1098.54918 0.49041 0.00026987 -0.92407 -0.0005085 -0.43366 -0.00023863 550.2809544091915 92.651 0.12505 96.414 96.333 96.458 3.7629 0.19287 -6.5458E-05 NaN 2.0598 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 100130 40427 10023 25552 25564 0.0038459759448414843 SFCWHISFG 9 Unmodified _SFCWHISFG_ 0 0 0 REV__L1MC4_dup11829|chr8:51876279-51877066:+|1.5737860192961095|0.0303401981239673|5.7|151.0|31|1|anti-sense REV__L1MC4_dup11829|chr8:51876279-51877066:+|1.5737860192961095|0.0303401981239673|5.7|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 542.2400512695312 2 542.23947 1082.46439 NaN NaN NaN NaN NaN NaN NaN 41.565 1 45.071 44.571 45.571 3.506 0 0 0 0.38299 1 7592 7592 4.756 1.8668 1 + 40428 26805 25553 25565 46328 46328 -0.07354728151472045 SFDADVQQSL 10 Unmodified _SFDADVQQSL_ 0 0 0 REV__nc|ENSG807|P61550|ERVS71-1 REV__nc|ENSG807|P61550|ERVS71-1 MULTI-MSMS UPN48_class_I_Rep_3 7 555.258056640625 2 555.259111 1108.50367 0.29727 0.00016506 -2.1351 -0.0011855 -1.8378 -0.0010204 555.2582042649177 49.743 0.56818 53.364 52.964 53.533 3.621 50 35 2 0 0 0 0.40112 2 9976 9976;10028 19.362 6.3195 1 131170 + 40429 32138 25554 25566 46329;46330 46329 -0.04624349386904214 SFDMFLSIF 9 Unmodified _SFDMFLSIF_ 0 0 0 L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|49|3|anti-sense L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|49|3|anti-sense L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|49|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 553.2639770507812 2 553.764986 1105.51542 0.55096 0.00030511 -0.66063 -0.00036583 -0.10966 -6.0727E-05 553.7651311802789 68.195 0.50636 71.647 71.495 72.002 3.4517 55 46 2 0 0 0 0.12034 1 15792 15792 7.2892 0 1 144260 40430 11347 25555 25567 46331 46331 -0.033118238972519976 SFEKFETY 8 Unmodified _SFEKFETY_ 0 0 0 REV__ENSG00000142634|ENST00000375980|EFHD2 REV__ENSG00000142634|ENST00000375980|EFHD2 MSMS UPN47_class_I_Rep_2 3 525.744140625 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 37.112 1 40.511 40.011 41.011 3.3988 0 0 0 0.37681 1 7039 7039 15.847 1.9411 1 + 40431 19411 25556 25568 46332 46332 -0.052179314389377396 SFESIFSKL 9 Unmodified _SFESIFSKL_ 0 0 0 REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|108|2|anti-sense REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|108|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 529.28271484375 2 529.281857 1056.54916 0.41584 0.0002201 -0.031624 -1.6738E-05 0.38422 0.00020336 529.2817465562613 65.262 0.61077 68.717 68.365 68.975 3.4541 101 43 3 0 0 0 0.23293 1 14893 14893 18.146 3.3081 1 389260 + 40432 28737 25557 25569 46333 46333 0.02314920866160719 SFESIFSKL 9 Unmodified _SFESIFSKL_ 0 0 0 REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|108|2|anti-sense REV__L1MEg_dup2139|chr2:171037525-171039180:-|1.218382425201623|0.0489909218495852|4.64|151.0|108|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 529.2837524414062 2 529.281857 1056.54916 0.51483 0.00027249 -0.05516 -2.9195E-05 0.45967 0.0002433 529.2817977288653 64.908 0.66507 68.416 68.102 68.767 3.5077 112 49 3 0 0 0 0.38714 1 14729 14729 8.7454 2.5396 1 371490 + 40433 28737 25557 25569 46334 46334 0.02314920866160719 SFFFFFYN 8 Unmodified _SFFFFFYN_ 0 0 0 L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|34|1|anti-sense;L1MC5_dup8003|chr9:100164426-100165106:-|1.0143964267998575|0.0083463115566891|6.93|150.0|43|2|anti-sense L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|34|1|anti-sense L1MB3_dup5558|chr6:7088054-7088807:-|1.3980577013886468|0.0078733979180124|7.47|150.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 559.752685546875 2 559.752736 1117.49092 NaN NaN NaN NaN NaN NaN NaN 36.398 1 40.086 39.586 40.586 3.6877 0 0 0 0.40604 1 6112 6112 2.5775 0 1 40434 10433 25558 25570 46335 46335 -0.06312715988474338 SFFFHFRF 8 Unmodified _SFFFHFRF_ 0 0 0 REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 568.295654296875 2 567.779619 1133.54469 0.46735 0.00026535 4.3664 0.0024791 4.8337 0.0027445 567.7826026226594 68.074 0.13751 71.526 71.417 71.554 3.4517 13 9 3 0 0 0 0.72333 1 15673 15673 4.756 0.42677 1 52778 + 40435 18732 25559 25571 46336 46336 -0.01674498766101351 SFFLVVVF 8 Unmodified _SFFLVVVF_ 0 0 0 REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|219|3|anti-sense REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|219|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.2793884277344 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 74.888 1 78.378 77.878 78.878 3.49 0 0 0 0.40364 1 17717 17717 5.7604 0 1 + 40436 29633 25560 25572 46337 46337 0.05713348913616301 SFFLVVVF 8 Unmodified _SFFLVVVF_ 0 0 0 REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|219|3|anti-sense REV__L1PA4_dup4383|chr6:2075276-2079019:-|3.2385242475414278|0.0741764121031538|5.45|151.0|219|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.2773742675781 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 75.962 1 79.462 78.962 79.962 3.4996 0 0 0 0.40364 1 18027 18027 5.7604 0 1 + 40437 29633 25560 25572 46338 46338 0.05713348913616301 SFFPAIIY 8 Unmodified _SFFPAIIY_ 0 0 0 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 MSMS UPN48_class_I_Rep_2 6 479.2581481933594 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 113.63 1 117.3 116.8 117.8 3.663 0 0 0 0.40738 1 27127 27127 0.79363 0 1 40438 1369 25561 25573 46339 46339 0.02076472016904063 SFFPAIIY 8 Unmodified _SFFPAIIY_ 0 0 0 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 MSMS UPN48_class_I_Rep_2 6 479.2580871582031 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 115.33 1 118.99 118.49 119.49 3.6616 0 0 0 0.40738 1 27601 27601 0.79363 0 1 40439 1369 25561 25573 46340 46340 0.02076472016904063 SFFPAIIY 8 Unmodified _SFFPAIIY_ 0 0 0 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 MSMS UPN48_class_I_Rep_2 6 479.25762939453125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 115.92 1 119.58 119.08 120.08 3.6607 0 0 0 0.40738 1 27758 27758 0.79363 0 1 40440 1369 25561 25573 46341 46341 0.02076472016904063 SFFPPHFF 8 Unmodified _SFFPPHFF_ 0 0 0 HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2459106445312 2 513.247621 1024.48069 0.35393 0.00018165 -3.2373 -0.0016615 -2.8833 -0.0014799 513.245594780417 65.812 0.095718 69.32 69.238 69.334 3.5077 7 5 2 0 0 0 0.82752 1 14904 14904 2.8892 0 1 61200 40441 7817 25562 25574 46342 46342 -0.030572789230518538 SFFPPHFF 8 Unmodified _SFFPPHFF_ 0 0 0 HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 513.247621 1024.48069 0.32861 0.00016866 -4.3933 -0.0022548 -4.0647 -0.0020862 513.2453465142553 65.949 0.25266 69.401 69.339 69.591 3.4516 0.094879 -0.00042785 NaN 2.8892 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 70380 40442 7817 25562 25574 -0.030572789230518538 SFFPPHFF 8 Unmodified _SFFPPHFF_ 0 0 0 HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|136|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 513.247621 1024.48069 0.35686 0.00018316 -3.9036 -0.0020035 -3.5468 -0.0018204 513.2454750061103 65.71 0.52453 69.197 68.955 69.479 3.4866 -0.10884 7.4763E-05 NaN 2.8892 45 37 2 NaN NaN NaN NaN 0 NaN NaN 0 66025 40443 7817 25562 25574 -0.030572789230518538 SFFRLNDYKM 10 Unmodified _SFFRLNDYKM_ 0 0 0 REV__Charlie1_dup1571|chr15:76255057-76255975:+|1.213983763968161|0.0206773042993587|5.88|151.0|67|3|anti-sense REV__Charlie1_dup1571|chr15:76255057-76255975:+|1.213983763968161|0.0206773042993587|5.88|151.0|67|3|anti-sense MSMS UPN46_class_I_Rep_3 1 440.8847961425781 3 440.885024 1319.63324 NaN NaN NaN NaN NaN NaN NaN 28.278 1 28.278 27.778 28.778 0 0 0 0 0.53105 1 4319 4319 0.77653 0 1 + 40444 17269 25563 25575 46343 46343 -0.013788713086341886 SFFTLPFGML 10 Unmodified _SFFTLPFGML_ 0 0 0 REV__L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|132|3|anti-sense REV__L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|132|3|anti-sense MSMS UPN48_class_I_Rep_3 7 580.6979370117188 2 580.296453 1158.57835 NaN NaN NaN NaN NaN NaN NaN 85.449 1 89.199 88.699 89.699 3.7494 0 0 0 0.53105 1 20262 20262 1.6526 0 1 + 40445 29307 25564 25576 46344 46344 0.005407418907680039 SFGEKPIV 8 Unmodified _SFGEKPIV_ 0 0 0 nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS UPN48_class_I_Rep_1 5 438.7433776855469 2 438.744911 875.475269 NaN NaN NaN NaN NaN NaN NaN 62.086 1 65.553 65.053 66.053 3.4678 0 0 0 0.40643 1 13868 13868 2.0598 0.21551 1 40446 2162 25565 25577 46345 46345 0.03254997494479994 SFGRLAYV 8 Unmodified _SFGRLAYV_ 0 0 0 HERVK9-int_dup573|chr16:10419447-10422962:-|3.153077132551644|0.1634055803301219|4.27|151.0|66|2|sense;HERVK9-int_dup344|chr8:54074375-54076515:+|2.633493299356718|0.1344927142002491|4.29|151.0|47|3|sense;HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|128|3|sense;HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|167|3|sense HERVK9-int_dup573|chr16:10419447-10422962:-|3.153077132551644|0.1634055803301219|4.27|151.0|66|2|sense HERVK9-int_dup573|chr16:10419447-10422962:-|3.153077132551644|0.1634055803301219|4.27|151.0|66|2|sense MSMS UPN47_class_I_Rep_2 3 456.30126953125 2 456.750527 911.486502 NaN NaN NaN NaN NaN NaN NaN 30.72 1 34.202 33.702 34.702 3.4821 0 0 0 0.40738 1 5103 5103 0.79363 0 1 40447 8307 25566 25578 46346 46346 0.02721819588600738 SFGRSWILQ 9 Unmodified _SFGRSWILQ_ 0 0 0 ENST00000438698.1_1_3:10029596-10035934:+|nuORF ENST00000438698.1_1_3:10029596-10035934:+|nuORF ENST00000438698.1_1_3:10029596-10035934:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 547.2933349609375 2 547.293091 1092.57163 0.6077 0.00033259 -0.35442 -0.00019397 0.25328 0.00013862 547.292597573912 55.802 0.50159 59.358 59.11 59.612 3.5559 49 34 2 0 0 0 0.11884 1 11926 11926 9.3831 0.63772 1 116250 40448 6764 25567 25579 46347 46347 0.029045650544276214 SFGSVFTFV 9 Unmodified _SFGSVFTFV_ 0 0 0 REV__L1MA2_dup6549|chr15:30880728-30881902:-|1.402614188007873|0.0179393858708536|6.29|150.0|54|1|anti-sense REV__L1MA2_dup6549|chr15:30880728-30881902:-|1.402614188007873|0.0179393858708536|6.29|150.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.7497253417969 2 495.750193 989.485833 0.29667 0.00014707 -0.18122 -8.9841E-05 0.11544 5.7231E-05 495.75010743638705 78.075 0.41874 81.417 81.223 81.642 3.3428 57 44 2 0 0 0 0.35081 1 19368 19368 10.824 0 1 80586 + 40449 24924 25568 25580 46348 46348 -0.00933019851095196 SFGSVFTFV 9 Unmodified _SFGSVFTFV_ 0 0 0 REV__L1MA2_dup6549|chr15:30880728-30881902:-|1.402614188007873|0.0179393858708536|6.29|150.0|54|1|anti-sense REV__L1MA2_dup6549|chr15:30880728-30881902:-|1.402614188007873|0.0179393858708536|6.29|150.0|54|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 495.79595947265625 2 495.750193 989.485833 0.29667 0.00014707 -0.18122 -8.9841E-05 0.11544 5.7231E-05 495.75010743638705 78.075 0.41874 81.417 81.223 81.642 3.3428 57 44 2 0 0 0 0.10699 1 19401 19401 15.847 0 1 80586 + 40450 24924 25568 25580 46349 46349 -0.00933019851095196 SFGYNLAEEA 10 Unmodified _SFGYNLAEEA_ 0 0 0 REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.7484130859375 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 88.927 1 88.927 88.427 89.427 0 0 0 0 0.53105 1 21377 21377 1.4819 0 1 + 40451 19854 25569 25581 46350 46350 -0.06355734415615188 SFGYNLAEEA 10 Unmodified _SFGYNLAEEA_ 0 0 0 REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.7479858398438 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 91.29 1 91.29 90.79 91.79 0 0 0 0 0.53105 1 22045 22045 1.4819 0.68827 1 + 40452 19854 25569 25581 46351 46351 -0.06355734415615188 SFGYNLAEEA 10 Unmodified _SFGYNLAEEA_ 0 0 0 REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.7488403320312 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 93.561 1 93.561 93.061 94.061 0 0 0 0 0.53105 1 22678 22678 1.4819 0.68827 1 + 40453 19854 25569 25581 46352 46352 -0.06355734415615188 SFGYNLAEEA 10 Unmodified _SFGYNLAEEA_ 0 0 0 REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF MSMS UPN46_class_I_Rep_3 1 550.8165283203125 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 97.831 1 97.831 97.331 98.331 0 0 0 0 0.53105 1 23815 23815 1.4819 0.68827 1 + 40454 19854 25569 25581 46353 46353 -0.06355734415615188 SFHKLMAF 8 Unmodified _SFHKLMAF_ 0 0 0 REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|83|2|anti-sense REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|83|2|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7453918457031 2 490.754756 979.494958 NaN NaN NaN NaN NaN NaN NaN 35.344 1 39.02 38.52 39.52 3.6762 0 0 0 0.39408 1 6471 6471 10.183 1.5901 1 + 40455 25175 25570 25582 46354 46354 0.004390502335809288 SFHLPFYN 8 Unmodified _SFHLPFYN_ 0 0 0 REV__L1MCa_dup4081|chr9:112323502-112324286:+|2.0258295311514263|0.0089326030567561|7.83|150.0|46|3|anti-sense REV__L1MCa_dup4081|chr9:112323502-112324286:+|2.0258295311514263|0.0089326030567561|7.83|150.0|46|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.7476806640625 2 512.747985 1023.48142 0.25405 0.00013026 -0.1531 -7.8504E-05 0.10094 5.1759E-05 512.7477974229274 75.228 0.63823 78.632 78.254 78.893 3.4034 96 57 2 0 0 0 0.82752 1 18541 18541 4.756 1.1595 1 151470 + 40456 27202 25571 25583 46355 46355 -0.02938484274000075 SFHLSLAWCV 10 Unmodified _SFHLSLAWCV_ 0 0 0 ENST00000566082.1_1_16:58051091-58054146:+|nuORF;nc|ENSG00000103005|Q9BQ65-2|USB1;ENSG00000103005|ENST00000219281|USB1 ENST00000566082.1_1_16:58051091-58054146:+|nuORF ENST00000566082.1_1_16:58051091-58054146:+|nuORF MSMS UPN47_class_I_Rep_3 4 581.7890625 2 581.789327 1161.5641 NaN NaN NaN NaN NaN NaN NaN 67.634 1 70.825 70.325 71.325 3.1914 0 0 0 0.53105 1 16387 16387 3.5965 0 1 40457 1638 25572 25584 46356 46356 -0.010219105375426807 SFIAVKCH 8 Unmodified _SFIAVKCH_ 0 0 0 REV__L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|104|2|anti-sense REV__L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|104|2|anti-sense MSMS UPN46_class_I_Rep_3 1 452.9130859375 2 452.739105 903.463658 NaN NaN NaN NaN NaN NaN NaN 56.962 1 56.962 56.462 57.462 0 0 0 0 0.40625 1 12454 12454 2.3027 1.5091 1 + 40458 26934 25573 25585 46357 46357 0.00806477199478195 SFIDYFPMFS 10 Unmodified _SFIDYFPMFS_ 0 0 0 L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 627.2808227539062 2 627.281 1252.54745 0.44607 0.00027981 0.66638 0.00041801 1.1125 0.00069782 627.2811735284221 42.032 0.44862 45.54 45.325 45.774 3.5079 69 44 2 0 0 0 0.84575 1 7717 7717 8.7454 3.0136 1 143180 40459 12741 25574 25586 46358 46358 -0.06872456214136946 SFIKLSCCS 9 Unmodified _SFIKLSCCS_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|77|1|anti-sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.7816467285156 2 494.235538 986.456524 NaN NaN NaN NaN NaN NaN NaN 30.186 1 33.901 33.401 34.401 3.7146 0 0 0 0.39428 1 4321 4321 2.0598 0 1 + 40460 26438 25575 25587 46359 46359 -0.03724623463244825 SFIKLSCCS 9 Unmodified _SFIKLSCCS_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|77|1|anti-sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.780029296875 2 494.235538 986.456524 NaN NaN NaN NaN NaN NaN NaN 31.073 1 34.788 34.288 35.288 3.7146 0 0 0 0.39428 1 4554 4554 2.0598 0 1 + 40461 26438 25575 25587 46360 46360 -0.03724623463244825 SFILKLAI 8 Unmodified _SFILKLAI_ 0 0 0 L1MD1_dup6374|chr20:3970958-3972618:+|6.388695530239721|0.022213842068228|8.17|151.0|93|2|anti-sense L1MD1_dup6374|chr20:3970958-3972618:+|6.388695530239721|0.022213842068228|8.17|151.0|93|2|anti-sense L1MD1_dup6374|chr20:3970958-3972618:+|6.388695530239721|0.022213842068228|8.17|151.0|93|2|anti-sense MSMS UPN47_class_I_Rep_1 2 452.7772521972656 2 452.796946 903.57934 NaN NaN NaN NaN NaN NaN NaN 112.05 1 115.62 115.12 116.12 3.572 0 0 0 0.40746 1 27648 27648 0.69038 0 1 40462 11970 25576 25588 46361 46361 0.12369324321969088 SFIYLSIFRPL 11 Unmodified _SFIYLSIFRPL_ 0 0 0 REV__ENSG00000203734|ENST00000541398|ECT2L REV__ENSG00000203734|ENST00000541398|ECT2L MSMS UPN48_class_I_Rep_1 5 452.5975341796875 3 452.595579 1354.76491 NaN NaN NaN NaN NaN NaN NaN 59.432 1 62.912 62.412 63.412 3.4801 0 0 0 0.38417 1 13058 13058 1.3296 0 1 + 40463 21173 25577 25589 46362 46362 0.1017168205080452 SFKKARYT 8 Unmodified _SFKKARYT_ 0 0 0 REV__L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|11|2|sense REV__L1MEf_dup8452|chr12:50445203-50445931:-|1.702597178844497|0.1463250123431392|3.54|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 500.76617431640625 2 500.782359 999.550165 NaN NaN NaN NaN NaN NaN NaN 113.45 1 113.45 112.95 113.95 0 0 0 0 0.40625 1 28022 28022 2.3027 0 1 + 40464 28694 25578 25590 46363 46363 0.05037180025692578 SFKLEQSPEHF 11 Unmodified _SFKLEQSPEHF_ 0 0 0 REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106 REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106 MULTI-MSMS UPN48_class_I_Rep_3 7 450.22216796875 3 450.222582 1347.64592 0.072225 3.2517E-05 -0.31516 -0.00014189 -0.24294 -0.00010938 450.22227667142676 48.978 0.27995 52.607 52.461 52.741 3.6291 32 22 2 0 0 0 0.64031 2 9761 9761;9805 4.1166 0 1 134030 + 40465 18244 25579 25591 46364;46365 46364 -0.014001366447246255 SFKNRHIKN 9 Unmodified _SFKNRHIKN_ 0 0 0 REV__L1M2_dup3175|chr5:179995966-179996338:-|2.049666127262864|0.025841214855605|6.31|151.0|6|2|sense REV__L1M2_dup3175|chr5:179995966-179996338:-|2.049666127262864|0.025841214855605|6.31|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.3345336914062 2 572.322714 1142.63087 0.5716 0.00032714 2.3325 0.0013349 2.9041 0.0016621 572.3228327678416 60.67 0.089085 64.144 64.109 64.198 3.4737 8 6 2 0 0 0 0.46869 1 13451 13451 3.9444 0 1 39775 + 40466 24193 25580 25592 46366 46366 0.065264610685972 SFKPGDQPGQ 10 Unmodified _SFKPGDQPGQ_ 0 0 0 AluJr4_dup12073|chr10:71768481-71768779:-|1.4145614025876845|0.0906079841777269|3.96|151.0|1|1|sense AluJr4_dup12073|chr10:71768481-71768779:-|1.4145614025876845|0.0906079841777269|3.96|151.0|1|1|sense AluJr4_dup12073|chr10:71768481-71768779:-|1.4145614025876845|0.0906079841777269|3.96|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 530.756591796875 2 530.756538 1059.49852 NaN NaN NaN NaN NaN NaN NaN 32.033 1 35.734 35.234 36.234 3.7015 0 0 0 0.53105 1 4818 4818 2.9952 0 1 40467 190 25581 25593 46367 46367 -0.028846084588622034 SFKYAFVFKC 10 Unmodified _SFKYAFVFKC_ 0 0 0 REV__L1MC1_dup5999|chr7:67125397-67126854:-|1.400772795975445|0.0157525534689378|6.47|150.0|57|1|anti-sense REV__L1MC1_dup5999|chr7:67125397-67126854:-|1.400772795975445|0.0157525534689378|6.47|150.0|57|1|anti-sense MSMS UPN48_class_I_Rep_1 5 620.3174438476562 2 620.315177 1238.6158 NaN NaN NaN NaN NaN NaN NaN 38.642 1 42.147 41.647 42.647 3.5048 0 0 0 0.53105 1 6722 6722 1.4819 0.28856 1 + 40468 26587 25582 25594 46368 46368 0.006038331564013788 SFLAKISNKTR 11 Unmodified _SFLAKISNKTR_ 0 0 0 L1MC1_dup4951|chr6:2261131-2263724:-|1.9602021019502816|0.0279465366686829|6.13|151.0|70|3|sense L1MC1_dup4951|chr6:2261131-2263724:-|1.9602021019502816|0.0279465366686829|6.13|151.0|70|3|sense L1MC1_dup4951|chr6:2261131-2263724:-|1.9602021019502816|0.0279465366686829|6.13|151.0|70|3|sense MSMS UPN46_class_I_Rep_3 1 422.2523498535156 3 422.250583 1263.72992 NaN NaN NaN NaN NaN NaN NaN 108.16 1 108.16 107.66 108.66 0 0 0 0 0.38417 1 26430 26430 4.1166 0.52957 1 40469 11159 25583 25595 46369 46369 0.10860439242810571 SFLFLVNLWL 10 Unmodified _SFLFLVNLWL_ 0 0 0 MLT1H2_dup4324|chr19:37935448-37935908:-|1.5529301044470656|0.0158110428166379|6.62|151.0|21|1|anti-sense MLT1H2_dup4324|chr19:37935448-37935908:-|1.5529301044470656|0.0158110428166379|6.62|151.0|21|1|anti-sense MLT1H2_dup4324|chr19:37935448-37935908:-|1.5529301044470656|0.0158110428166379|6.62|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3799438476562 2 626.360442 1250.70633 0.42779 0.00026795 2.3767 0.0014887 2.8045 0.0017566 626.3618944072952 98.982 0.099808 102.59 102.55 102.65 3.6065 17 12 2 0 0 0 0.56309 1 23902 23902 1.6526 0 1 131610 40470 16448 25584 25596 46370 46370 0.09100625476344248 SFLLGNYA 8 Unmodified _SFLLGNYA_ 0 0 0 REV__L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|31|2|sense REV__L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 442.72930908203125 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 103.55 1 103.55 103.05 104.05 0 0 0 0 0.40404 1 25268 25268 5.2307 0 1 + 40471 25721 25585 25597 46371 46371 -0.002415755396327768 SFLLMVYLA 9 Unmodified _SFLLMVYLA_ 0 0 0 REV__L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|204|1|anti-sense REV__L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|204|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.7932739257812 2 528.793546 1055.57254 -0.23783 -0.00012576 0.11971 6.3301E-05 -0.11812 -6.2461E-05 528.7935218224331 31.201 0.61245 34.5 34.28 34.892 3.2991 84 50 2 0 0 0 0.33654 1 5260 5260 11.64 0 1 98043 + 40472 24791 25586 25598 46372 46372 0.0469764337910874 SFLLPDITDT 10 Unmodified _SFLLPDITDT_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS UPN48_class_I_Rep_2 6 561.3026123046875 2 561.289879 1120.56521 NaN NaN NaN NaN NaN NaN NaN 65.608 1 69.087 68.587 69.587 3.4792 0 0 0 0.53105 1 14925 14925 6.7232 0 1 40473 1848 25587 25599 46373 46373 0.009745823123694208 SFLLPDITDT 10 Unmodified _SFLLPDITDT_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS UPN48_class_I_Rep_2 6 561.3031005859375 2 561.289879 1120.56521 NaN NaN NaN NaN NaN NaN NaN 65.744 1 69.23 68.73 69.73 3.4866 0 0 0 0.53105 1 14966 14966 19.257 2.3147 1 40474 1848 25587 25599 46374 46374 0.009745823123694208 SFLLPDITDT 10 Unmodified _SFLLPDITDT_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS UPN48_class_I_Rep_3 7 561.3031616210938 2 561.289879 1120.56521 NaN NaN NaN NaN NaN NaN NaN 65.649 1 69.157 68.657 69.657 3.5077 0 0 0 0.53105 1 14852 14852 19.257 2.3147 1 40475 1848 25587 25599 46375 46375 0.009745823123694208 SFLLPDITDT 10 Unmodified _SFLLPDITDT_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS UPN48_class_I_Rep_3 7 561.30322265625 2 561.289879 1120.56521 NaN NaN NaN NaN NaN NaN NaN 66.049 1 69.556 69.056 70.056 3.5077 0 0 0 0.53105 1 14973 14973 19.257 2.3147 1 40476 1848 25587 25599 46376 46376 0.009745823123694208 SFLLYCMLM 9 Unmodified _SFLLYCMLM_ 0 0 0 REV__Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|14|2|sense REV__Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 560.7655639648438 2 560.765617 1119.51668 NaN NaN NaN NaN NaN NaN NaN 38.669 1 42.174 41.674 42.674 3.5048 0 0 0 0.381 1 6731 6731 5.2307 0 1 + 40477 17343 25588 25600 46377 46377 -0.03829649124372736 SFLLYCMLM 9 Unmodified _SFLLYCMLM_ 0 0 0 REV__Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|14|2|sense REV__Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 560.7664794921875 2 560.765617 1119.51668 NaN NaN NaN NaN NaN NaN NaN 38.353 1 42.013 41.513 42.513 3.6595 0 0 0 0.381 1 6581 6581 5.2307 0 1 + 40478 17343 25588 25600 46378 46378 -0.03829649124372736 SFLNYLLSTF 10 Unmodified _SFLNYLLSTF_ 0 0 0 REV__L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|50|3|anti-sense REV__L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_2 6 602.8153076171875 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 73.954 1 77.532 77.032 78.032 3.5779 0 0 0 0.53105 1 17385 17385 3.2813 0 1 + 40479 26881 25589 25601 46379 46379 0.02391165445965271 SFLQECHHFT 10 Unmodified _SFLQECHHFT_ 0 0 0 L1MD2_dup5307|chr9:6516134-6517328:-|1.0428347067153572|0.0063624700941285|7.36|150.0|67|2|anti-sense L1MD2_dup5307|chr9:6516134-6517328:-|1.0428347067153572|0.0063624700941285|7.36|150.0|67|2|anti-sense L1MD2_dup5307|chr9:6516134-6517328:-|1.0428347067153572|0.0063624700941285|7.36|150.0|67|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 416.853271484375 3 416.853724 1247.53934 -0.98002 -0.00040853 0.43066 0.00017952 -0.54936 -0.000229 416.853880954047 36.87 0.99525 40.269 39.808 40.803 3.3988 162 73 3 0 0 0 0.56317 1 7045 7045 1.5923 0 1 184210 40480 12004 25590 25602 46380 46380 -0.0745259041088957 SFLQKTLF 8 Unmodified _SFLQKTLF_ 0 0 0 L1M5_dup44478|chr15:28133308-28134691:-|1.1784983902601422|0.2462482461918847|2.26|151.0|6|1|sense L1M5_dup44478|chr15:28133308-28134691:-|1.1784983902601422|0.2462482461918847|2.26|151.0|6|1|sense L1M5_dup44478|chr15:28133308-28134691:-|1.1784983902601422|0.2462482461918847|2.26|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 492.2810363769531 2 492.28166 982.548768 0.18586 9.1498E-05 0.031521 1.5517E-05 0.21739 0.00010701 492.28158933298914 58.209 0.66739 61.74 61.386 62.054 3.5317 80 43 2 0 0 0 0.82752 1 12637 12637 26.884 0 1 227640 40481 9172 25591 25603 46381 46381 0.05679545936948216 SFLSWKVTF 9 Unmodified _SFLSWKVTF_ 0 0 0 MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense;MLT1D_dup6222|chr5:69952066-69952505:+|3.2543735305528894|0.0198106707667125|7.36|150.0|34|3|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.80029296875 2 557.800217 1113.58588 0.51469 0.00028709 -0.79442 -0.00044313 -0.27973 -0.00015603 557.8000894329505 69.631 1.0972 73.086 72.636 73.733 3.4548 336 83 6 0 0 0 0.081756 3 16157 16157;16198;16240 38.176 7.539 1 1567300 40482 16356 25592 25604 46382;46383;46384 46382 0.033632174827062045 SFLSWKVTF 9 Unmodified _SFLSWKVTF_ 0 0 0 MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense;MLT1D_dup6222|chr5:69952066-69952505:+|3.2543735305528894|0.0198106707667125|7.36|150.0|34|3|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.8004150390625 2 557.800217 1113.58588 0.49575 0.00027653 -0.76981 -0.0004294 -0.27405 -0.00015287 557.8001100570709 69.463 1.187 72.984 72.52 73.707 3.5216 290 97 5 0 0 0 0.081756 5 16107 15987;16028;16070;16107;16183 38.176 5.734 1 1888800 40483 16356 25592 25604 46385;46386;46387;46388;46389 46388 0.033632174827062045 SFLSWKVTF 9 Unmodified _SFLSWKVTF_ 0 0 0 MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense;MLT1D_dup6222|chr5:69952066-69952505:+|3.2543735305528894|0.0198106707667125|7.36|150.0|34|3|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.8004760742188 2 557.800217 1113.58588 0.46995 0.00026214 -0.86151 -0.00048055 -0.39156 -0.00021841 557.800105764204 69.35 1.1396 72.863 72.474 73.614 3.5128 294 89 5 0 0 0 0.081756 3 15959 15959;15998;16036 38.176 4.0731 1 1798400 40484 16356 25592 25604 46390;46391;46392 46390 0.033632174827062045 SFLVVTNHMS 10 Unmodified _SFLVVTNHMS_ 0 0 0 REV__ENSG00000055609|ENST00000262189|KMT2C REV__ENSG00000055609|ENST00000262189|KMT2C MSMS UPN48_class_I_Rep_2 6 567.7409057617188 2 567.784241 1133.55393 NaN NaN NaN NaN NaN NaN NaN 114.24 1 117.9 117.4 118.4 3.663 0 0 0 0.53105 1 27298 27298 1.6526 0 1 + 40485 17698 25593 25605 46393 46393 -0.0075051826272556355 SFLWKFRPRGA 11 Unmodified _SFLWKFRPRGA_ 0 0 0 L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|285|2|anti-sense;L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|83|2|anti-sense L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|285|2|anti-sense L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|285|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 455.2490234375 3 455.591051 1363.75132 -0.096203 -4.3829E-05 -3.5019 -0.0015954 -3.5981 -0.0016393 455.5894722547907 49.167 0.066219 52.827 52.806 52.872 3.6592 6 4 2 0 0 0 22.551 1 10686 10686 1.0136 0.31591 1 31194 40486 14581 25594 25606 46394 46394 0.08399869062213838 SFLWLSTI 8 Unmodified _SFLWLSTI_ 0 0 0 L1PB1_dup11616|chr16:58608573-58609092:+|1.0386172473139612|0.0086886510904021|6.9|151.0|32|3|anti-sense L1PB1_dup11616|chr16:58608573-58609092:+|1.0386172473139612|0.0086886510904021|6.9|151.0|32|3|anti-sense L1PB1_dup11616|chr16:58608573-58609092:+|1.0386172473139612|0.0086886510904021|6.9|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_3 7 483.76690673828125 2 483.768386 965.522219 NaN NaN NaN NaN NaN NaN NaN 31.224 1 34.926 34.426 35.426 3.7015 0 0 0 0.37214 1 4591 4591 16.942 0 1 40487 15023 25595 25607 46395 46395 0.03807857045603669 SFMPFYDIFS 10 Unmodified _SFMPFYDIFS_ 0 0 0 REV__L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense REV__L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.7816772460938 2 627.281 1252.54745 0.056058 3.5164E-05 -0.019187 -1.2035E-05 0.036872 2.3129E-05 627.2810813324812 41.579 0.62634 45.259 45.015 45.641 3.6792 59 44 2 0 0 0 0.54822 1 8345 8345 5.7319 0 1 79951 + 40488 28090 25596 25608 46396 46396 -0.06872456214136946 SFMPFYDIFS 10 Unmodified _SFMPFYDIFS_ 0 0 0 REV__L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense REV__L1ME3B_dup900|chr2:97921007-97922012:+|1.02197801258105|0.0304634100629485|5.07|150.0|76|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 627.7816772460938 2 627.281 1252.54745 0.056058 3.5164E-05 -0.019187 -1.2035E-05 0.036872 2.3129E-05 627.2810813324812 41.579 0.62634 45.259 45.015 45.641 3.6792 59 44 2 0 0 0 0.84575 1 8345 8345 5.7319 0 1 79951 + 40489 28090 25596 25608 46397 46397 -0.06872456214136946 SFMTTWVNL 9 Unmodified _SFMTTWVNL_ 0 0 0 L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|24|1|sense L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|24|1|sense L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|24|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 550.2177734375 2 549.76806 1097.52157 0.030526 1.6782E-05 3.4581 0.0019012 3.4887 0.001918 549.7697208837322 28.035 0.084055 31.534 31.489 31.573 3.4986 9 7 2 0 0 0 0.12462 1 4298 4298 1.8442 0.19162 1 32637 40490 9986 25597 25609 46398 46398 -0.023293056657394118 SFMTTWVNL 9 Unmodified _SFMTTWVNL_ 0 0 0 L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|24|1|sense L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|24|1|sense L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|24|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 549.76806 1097.52157 -0.22154 -0.0001218 3.9127 0.0021511 3.6912 0.0020293 549.7702400533749 28.087 0.25448 31.42 31.388 31.643 3.3338 -0.056685 0.00015111 NaN 1.8442 24 21 2 NaN NaN NaN NaN 0 NaN NaN 0 41976 40491 9986 25597 25609 -0.023293056657394118 SFMWVWSL 8 Unmodified _SFMWVWSL_ 0 0 0 REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|48|1|anti-sense REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_2 3 528.2733764648438 2 528.254588 1054.49462 NaN NaN NaN NaN NaN NaN NaN 86.451 1 89.892 89.392 90.392 3.4407 0 0 0 0.39624 1 21504 21504 9.3474 1.4373 1 + 40492 24198 25598 25610 46399 46399 -0.03044369486292453 SFNIPLTAL 9 Unmodified _SFNIPLTAL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 488.2788391113281 2 488.279118 974.543683 0.25195 0.00012302 -0.22051 -0.00010767 0.031446 1.5355E-05 488.2788689141718 57.635 0.72641 61.129 60.723 61.45 3.4942 105 59 2 0 0 0 0.14216 2 12505 12505;12566 26.268 0 1 212530 40493 15322 25599 25611 46400;46401 46400 0.05539242074314643 SFNIPLTAL 9 Unmodified _SFNIPLTAL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.2791442871094 2 488.279118 974.543683 0.35876 0.00017517 -0.20292 -9.908E-05 0.15584 7.6095E-05 488.2789034101986 57.573 0.72372 61.087 60.695 61.419 3.5142 91 57 2 0 0 0 0.20317 2 12497 12497;12527 20.415 0 1 200700 40494 15322 25599 25611 46402;46403 46402 0.05539242074314643 SFNIPLTAL 9 Unmodified _SFNIPLTAL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|209|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.781005859375 2 488.279118 974.543683 0.16159 7.8899E-05 -0.080171 -3.9146E-05 0.081415 3.9753E-05 488.2789232867963 57.475 0.59064 61.007 60.645 61.236 3.5317 92 53 3 0 0 0 0.279 1 12418 12418 15.248 0 1 242260 40495 15322 25599 25611 46404 46404 0.05539242074314643 SFNKIKSF 8 Unmodified _SFNKIKSF_ 0 0 0 L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|167|2|anti-sense L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|167|2|anti-sense L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|167|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.7628479003906 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 50.788 1 54.416 53.916 54.916 3.6285 0 0 0 0.40404 1 11167 11167 5.2307 0 1 40496 13558 25600 25612 46405 46405 0.042383752771456784 SFNKSGGGG 9 Unmodified _SFNKSGGGG_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MSMS UPN47_class_I_Rep_3 4 405.69061279296875 2 405.690667 809.366781 NaN NaN NaN NaN NaN NaN NaN 22.37 1 25.72 25.22 26.22 3.3496 0 0 0 0.4029 1 2665 2665 0 0 1 40497 2473 25601 25613 46406 46406 -0.045527937559313614 SFPGCVTT 8 Unmodified _SFPGCVTT_ 0 0 0 HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|208|1|anti-sense;HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|263|3|anti-sense;HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|286|2|anti-sense;HERV17-int_dup293|chr4:82474680-82478317:+|1.2304174624253577|0.2358412824346031|2.38|151.0|127|1|anti-sense;HERV17-int_dup199|chr3:87940824-87945057:-|2.2819962277081025|0.0575669791136135|5.31|134.0|270|3|anti-sense;HERV17-int_dup469|chr7:92468707-92476596:-|1.1004994144950078|0.3426747696535354|1.68|150.0|393|2|anti-sense;HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|294|2|anti-sense;HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|251|2|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|208|1|anti-sense HERV17-int_dup383|chr6:24676688-24682292:-|2.837543803415712|0.2352925861613637|3.59|151.0|208|1|anti-sense MSMS UPN48_class_I_Rep_2 6 406.1858215332031 2 406.186371 810.35819 NaN NaN NaN NaN NaN NaN NaN 70.642 1 74.178 73.678 74.678 3.5359 0 0 0 0.40604 1 16441 16441 2.5775 0 1 40498 8005 25602 25614 46407 46407 -0.05457483716804745 SFPLSLESSR 10 Unmodified _SFPLSLESSR_ 0 0 0 ENST00000396045.7_1_7:36894655-36894850:-|nuORF ENST00000396045.7_1_7:36894655-36894850:-|nuORF ENST00000396045.7_1_7:36894655-36894850:-|nuORF MSMS UPN47_class_I_Rep_3 4 561.792724609375 2 561.793121 1121.57169 NaN NaN NaN NaN NaN NaN NaN 80.776 1 84.085 83.585 84.585 3.309 0 0 0 0.53105 1 20204 20204 6.2058 0.47393 1 40499 6561 25603 25615 46408 46408 0.0157652026375672 SFQFLVKD 8 Unmodified _SFQFLVKD_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MSMS UPN47_class_I_Rep_2 3 492.277099609375 2 492.263468 982.512382 NaN NaN NaN NaN NaN NaN NaN 34.263 1 37.702 37.202 38.202 3.4398 0 0 0 0.40625 1 6175 6175 2.3027 0 1 40500 3110 25604 25616 46409 46409 0.02042669040235978 SFQQIVLK 8 Unmodified _SFQQIVLK_ 0 0 0 L1MB4_dup5566|chr10:69146409-69147698:-|1.8442074979329508|0.0476617710973168|5.27|151.0|15|2|sense L1MB4_dup5566|chr10:69146409-69147698:-|1.8442074979329508|0.0476617710973168|5.27|151.0|15|2|sense L1MB4_dup5566|chr10:69146409-69147698:-|1.8442074979329508|0.0476617710973168|5.27|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 481.7867431640625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 41.941 1 45.698 45.198 46.198 3.7579 0 0 0 0.40746 1 7708 7708 0.69038 0 1 40501 10534 25605 25617 46410 46410 0.07734948311212975 SFQRFDAILKA 11 Unmodified _SFQRFDAILKA_ 0 0 0 ENST00000479458.1_1_1:24140678-24143239:-|nuORF;ENST00000513148.1_1_1:24137168-24151905:-|nuORF;ENSG00000117305|ENST00000374490|HMGCL ENST00000479458.1_1_1:24140678-24143239:-|nuORF ENST00000479458.1_1_1:24140678-24143239:-|nuORF MSMS UPN46_class_I_Rep_3 1 648.3563232421875 2 648.358962 1294.70337 NaN NaN NaN NaN NaN NaN NaN 88.648 1 88.648 88.148 89.148 0 0 0 0 0.38417 1 21299 21299 2.7352 0.43246 1 40502 2215 25606 25618 46411 46411 0.06780750351504139 SFQRGSRLY 9 Unmodified _SFQRGSRLY_ 0 0 0 L1PA6_dup4188|chr10:72435421-72441564:+|4.028390149030293|0.0532224935036637|6.24|151.0|298|2|anti-sense L1PA6_dup4188|chr10:72435421-72441564:+|4.028390149030293|0.0532224935036637|6.24|151.0|298|2|anti-sense L1PA6_dup4188|chr10:72435421-72441564:+|4.028390149030293|0.0532224935036637|6.24|151.0|298|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.2918090820312 2 557.293622 1112.57269 NaN NaN NaN NaN NaN NaN NaN 50.392 1 54.086 53.586 54.586 3.6946 0 0 0 0.38478 1 10284 10284 4.3292 1.334 1 40503 14624 25607 25619 46412 46412 0.020907794233380628 SFQRRLLIS 9 Unmodified _SFQRRLLIS_ 0 0 0 REV__L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|31|3|sense REV__L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3174438476562 2 560.33529 1118.65603 0.33291 0.00018654 0.028631 1.6043E-05 0.36154 0.00020258 560.335368008282 41.135 0.43944 44.781 44.53 44.97 3.6458 59 44 2 0 0 0 0.42249 1 7404 7404 6.7232 0.99131 1 70610 + 40504 27691 25608 25620 46413 46413 0.10144515871184012 SFRCVLPSMY 10 Unmodified _SFRCVLPSMY_ 0 0 0 REV__Tigger2a_dup570|chr2:230458083-230458505:-|1.2528705706027663|0.1613741848900043|2.96|151.0|4|2|sense REV__Tigger2a_dup570|chr2:230458083-230458505:-|1.2528705706027663|0.1613741848900043|2.96|151.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 601.7756958007812 2 601.788469 1201.56239 0.51622 0.00031066 -0.94172 -0.00056672 -0.4255 -0.00025606 601.7876474766085 52.916 0.89114 56.243 55.956 56.847 3.3266 78 57 2 0 0 0 0.56033 1 12013 12013 3.5965 0 1 191300 + 40505 32689 25609 25621 46414 46414 -0.0303328761776811 SFRELFSPY 9 Unmodified _SFRELFSPY_ 0 0 0 REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense MSMS UPN47_class_I_Rep_2 3 573.28466796875 2 573.284931 1144.55531 NaN NaN NaN NaN NaN NaN NaN 88.875 1 92.328 91.828 92.828 3.4525 0 0 0 0.39518 1 22090 22090 1.8442 0 1 + 40506 24039 25610 25622 46415 46415 -0.011185609023186771 SFRELFSPY 9 Unmodified _SFRELFSPY_ 0 0 0 REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|165|1|anti-sense MSMS UPN47_class_I_Rep_2 3 573.2855224609375 2 573.284931 1144.55531 NaN NaN NaN NaN NaN NaN NaN 88.934 1 92.387 91.887 92.887 3.4525 0 0 0 0.39518 1 22103 22103 1.8442 0 1 + 40507 24039 25610 25622 46416 46416 -0.011185609023186771 SFRGFQQKQN 10 Unmodified _SFRGFQQKQN_ 0 0 0 ENST00000311637.9_2_20:50215600-50215741:-|nuORF ENST00000311637.9_2_20:50215600-50215741:-|nuORF ENST00000311637.9_2_20:50215600-50215741:-|nuORF MSMS UPN48_class_I_Rep_1 5 620.3152465820312 2 620.315086 1238.61562 NaN NaN NaN NaN NaN NaN NaN 38.21 1 41.715 41.215 42.215 3.5052 0 0 0 0.53105 1 6590 6590 1.4819 0.28856 1 40508 6108 25611 25623 46417 46417 0.00585549480751979 SFRHPGLY 8 Unmodified _SFRHPGLY_ 0 0 0 ENSG00000174279|ENST00000308618|EVX2 ENSG00000174279|ENST00000308618|EVX2 ENSG00000174279|ENST00000308618|EVX2 MULTI-MSMS UPN48_class_I_Rep_2 6 488.7529602050781 2 488.753601 975.49265 0.18683 9.1315E-05 -0.52764 -0.00025789 -0.34081 -0.00016657 488.75331823047867 43.282 0.36647 47.043 46.842 47.209 3.7617 46 27 2 0 0 0 0.82752 1 8073 8073 2.8892 0 1 82455 40509 4675 25612 25624 46418 46418 0.003923378201193373 SFRRVPSN 8 Unmodified _SFRRVPSN_ 0 0 0 REV__ENST00000325954.8_2_12:120972163-120972457:+|nuORF REV__ENST00000325954.8_2_12:120972163-120972457:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 481.76202392578125 2 481.761958 961.509363 -0.37751 -0.00018187 -0.054492 -2.6252E-05 -0.43201 -0.00020812 481.7619683140652 13.756 0.18851 17.213 17.114 17.302 3.457 39 22 2 0 0 0 0.82752 1 401 401 2.3027 0 1 47162 + 40510 21760 25613 25625 46419 46419 0.027068387060808163 SFRRWVLF 8 Unmodified _SFRRWVLF_ 0 0 0 REV__ENST00000548897.1_2_12:104322314-104323808:-|nuORF REV__ENST00000548897.1_2_12:104322314-104323808:-|nuORF MSMS UPN48_class_I_Rep_3 7 555.8135986328125 2 555.813993 1109.61343 NaN NaN NaN NaN NaN NaN NaN 79.659 1 83.302 82.802 83.802 3.6423 0 0 0 0.40404 1 18891 18891 5.2307 0.33366 1 + 40511 22948 25614 25626 46420 46420 0.06301165533591302 SFRSSETSF 9 Unmodified _SFRSSETSF_ 0 0 0 L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.2406005859375 2 524.240721 1046.46689 -0.10585 -5.549E-05 -0.38489 -0.00020178 -0.49074 -0.00025726 524.2405178940828 37.837 0.76403 41.502 41.279 42.043 3.6652 90 58 2 0 0 0 0.090251 1 7257 7257 36.127 5.4905 1 218430 40512 12713 25615 25627 46421 46421 -0.054486012128108996 SFRSSETSF 9 Unmodified _SFRSSETSF_ 0 0 0 L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.2401733398438 2 524.240721 1046.46689 -0.16285 -8.5374E-05 -0.23845 -0.000125 -0.4013 -0.00021038 524.2405378427912 38.264 0.68149 41.506 41.245 41.927 3.2414 93 50 2 0 0 0 0.090251 1 7421 7421 36.127 3.3413 1 196470 40513 12713 25615 25627 46422 46422 -0.054486012128108996 SFRSSETSF 9 Unmodified _SFRSSETSF_ 0 0 0 L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 524.240721 1046.46689 -0.10585 -5.549E-05 -0.38489 -0.00020178 -0.49074 -0.00025726 524.2405178940828 37.837 0.76403 41.502 41.279 42.043 3.6652 -0.040401 -0.00013902 NaN 36.127 90 58 2 NaN NaN NaN NaN 0 NaN NaN 0 218430 40514 12713 25615 25627 -0.054486012128108996 SFRSSETSF 9 Unmodified _SFRSSETSF_ 0 0 0 L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense L1ME3B_dup377|chr1:160301773-160302549:+|1.156892954855876|0.2153278756396206|2.43|151.0|55|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 524.240721 1046.46689 -0.16285 -8.5374E-05 -0.23845 -0.000125 -0.4013 -0.00021038 524.2405378427912 38.264 0.68149 41.506 41.245 41.927 3.2414 -0.036703 1.4519E-05 NaN 36.127 93 50 2 NaN NaN NaN NaN 0 NaN NaN 0 196470 40515 12713 25615 25627 -0.054486012128108996 SFRYNGLIHR 10 Unmodified _SFRYNGLIHR_ 0 0 0 ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28 ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS UPN46_class_I_Rep_3 1 421.5636291503906 3 421.563273 1261.66799 0.072628 3.0617E-05 0.14784 6.2322E-05 0.22046 9.2939E-05 421.89763330369436 40.439 0.25568 40.439 40.366 40.621 0 41 27 2 0 0 0 0.51798 1 7891 7891 9.7643 2.2872 1 271720 40516 1853 25616 25628 46423 46423 0.04762132614382608 SFSELIMGLL 10 Unmodified _SFSELIMGLL_ 0 0 0 L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|184|3|anti-sense L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|184|3|anti-sense L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|184|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2805786132812 2 555.299193 1108.58383 NaN NaN NaN NaN NaN NaN NaN 83.518 1 86.868 86.368 87.368 3.35 0 0 0 0.53105 1 20948 20948 3.5965 0 1 40517 13568 25617 25629 46424 46424 0.03388420682608739 SFSFDTIKL 9 Unmodified _SFSFDTIKL_ 0 0 0 REV__ENST00000513594.5_1_4:120438269-120460171:-|nuORF REV__ENST00000513594.5_1_4:120438269-120460171:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 529.2817993164062 2 529.281857 1056.54916 0.44678 0.00023647 -0.20399 -0.00010797 0.24278 0.0001285 529.281680187698 65.152 0.70338 68.631 68.179 68.883 3.4792 90 48 2 0 0 0 0.17897 1 14807 14807 22.736 0 1 398780 + 40518 19288 25618 25630 46425 46425 0.023149208661379816 SFSHIFPSVI 10 Unmodified _SFSHIFPSVI_ 0 0 0 REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|62|1|anti-sense REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|62|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.3031616210938 2 567.303124 1132.5917 0.52144 0.00029582 -0.28205 -0.00016001 0.23939 0.00013581 567.3029232997898 64.713 0.37774 68.192 67.984 68.362 3.4792 42 26 2 0 0 0 0.44401 1 14605 14605 16.149 3.1066 1 122190 + 40519 23485 25619 25631 46426 46426 0.030703159943641367 SFSHIFPSVI 10 Unmodified _SFSHIFPSVI_ 0 0 0 REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|62|1|anti-sense REV__HAL1M8_dup996|chr8:25442030-25443476:+|1.1576492095995667|0.3996957047568392|1.53|151.0|62|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 567.303124 1132.5917 0.52229 0.0002963 0.090122 5.1127E-05 0.61241 0.00034742 567.3032082241192 64.758 0.22712 68.212 68.12 68.347 3.4541 0.010089 0.00032389 NaN 16.149 21 18 2 NaN NaN NaN NaN 0 NaN NaN 0 117430 + 40520 23485 25619 25631 0.030703159943641367 SFSKLKIYD 9 Unmodified _SFSKLKIYD_ 0 0 0 REV__L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|27|3|sense REV__L1MA5A_dup2853|chr14:102813750-102814502:-|1.1962798806040904|0.0065129833657175|7.52|151.0|27|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.802734375 2 550.802957 1099.59136 0.035189 1.9382E-05 -0.20464 -0.00011272 -0.16945 -9.3336E-05 550.8027133842068 15.822 0.67654 19.209 19.037 19.714 3.3864 115 80 2 0 0 0 0.49187 1 921 921 1.4819 1.4819 1 49040 + 40521 24941 25620 25632 46427 46427 0.04554896274521525 SFSNAFKFVPQ 11 Unmodified _SFSNAFKFVPQ_ 0 0 0 REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|76|1|anti-sense REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|76|1|anti-sense MSMS UPN47_class_I_Rep_1 2 635.9921875 2 636.324588 1270.63462 NaN NaN NaN NaN NaN NaN NaN 44.938 1 48.638 48.138 49.138 3.6999 0 0 0 0.38417 1 9391 9391 1.1933 0 1 + 40522 25032 25621 25633 46428 46428 0.010130860518074769 SFSPRTKEL 9 Unmodified _SFSPRTKEL_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS UPN48_class_I_Rep_1 5 532.7905883789062 2 532.790381 1063.56621 0.32013 0.00017056 0.13508 7.1972E-05 0.45521 0.00024253 532.7902817114705 48.017 1.0412 51.539 51.198 52.239 3.5219 106 68 2 0 0 0 0.43982 1 9617 9617 5.7319 1.7875 1 209650 + 40523 20726 25622 25634 46429 46429 0.036968414719467546 SFSQEKSKPT 10 Unmodified _SFSQEKSKPT_ 0 0 0 THE1B-int_dup104|chr1:86923864-86925413:-|1.099397500570524|0.0367621980598459|4.9|151.0|24|2|sense THE1B-int_dup104|chr1:86923864-86925413:-|1.099397500570524|0.0367621980598459|4.9|151.0|24|2|sense THE1B-int_dup104|chr1:86923864-86925413:-|1.099397500570524|0.0367621980598459|4.9|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 569.7888793945312 2 569.790578 1137.5666 NaN NaN NaN NaN NaN NaN NaN 26.824 1 30.387 29.887 30.887 3.5629 0 0 0 0.53105 1 3357 3357 1.4819 0 1 40524 32888 25623 25635 46430 46430 0.0033221640114788897 SFSQQIKNL 9 Unmodified _SFSQQIKNL_ 0 0 0 REV__L1M4_dup10226|chr9:125315241-125316210:+|2.836631676958196|0.0681574008207799|5.38|151.0|69|3|anti-sense REV__L1M4_dup10226|chr9:125315241-125316210:+|2.836631676958196|0.0681574008207799|5.38|151.0|69|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.78955078125 2 532.790381 1063.56621 0.33417 0.00017804 -0.07234 -3.8542E-05 0.26183 0.0001395 532.79032235432 47.674 1.08 51.41 51.127 52.207 3.7361 115 78 2 0 0 0 0.35081 1 9522 9522 10.824 0 1 165110 + 40525 24348 25624 25636 46431 46431 0.036968414719467546 SFSQQIKNL 9 Unmodified _SFSQQIKNL_ 0 0 0 REV__L1M4_dup10226|chr9:125315241-125316210:+|2.836631676958196|0.0681574008207799|5.38|151.0|69|3|anti-sense REV__L1M4_dup10226|chr9:125315241-125316210:+|2.836631676958196|0.0681574008207799|5.38|151.0|69|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.7902221679688 2 532.790381 1063.56621 0.43731 0.000233 -0.13673 -7.2846E-05 0.30059 0.00016015 532.790279972683 47.91 1.027 51.544 51.189 52.216 3.6339 108 71 2 0 0 0 0.20276 1 9540 9540 20.454 0 1 147490 + 40526 24348 25624 25636 46432 46432 0.036968414719467546 SFSRSWHTPV 10 Unmodified _SFSRSWHTPV_ 0 0 0 ENST00000430334.7_1_17:43513504-43513738:-|nuORF ENST00000430334.7_1_17:43513504-43513738:-|nuORF ENST00000430334.7_1_17:43513504-43513738:-|nuORF MSMS UPN47_class_I_Rep_3 4 602.2988891601562 2 602.298904 1202.58326 NaN NaN NaN NaN NaN NaN NaN 71.698 1 74.917 74.417 75.417 3.2188 0 0 0 0.53105 1 17607 17607 1.6526 0 1 40527 6722 25625 25637 46433 46433 -0.009932379222618692 SFSSSQAQGE 10 Unmodified _SFSSSQAQGE_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|130|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|130|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|130|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.22021484375 2 514.219985 1026.42542 -0.2229 -0.00011462 0.43961 0.00022606 0.21671 0.00011144 514.2201658495056 20.922 0.60619 24.566 24.372 24.979 3.6436 85 64 2 0 0 0 0.53004 1 2250 2250 8.1555 2.4237 1 66572 40528 12673 25626 25638 46434 46434 -0.08673781972129291 SFSWLNNI 8 Unmodified _SFSWLNNI_ 0 0 0 L1MB5_dup4342|chrX:2653448-2654103:+|2.0084201705812377|0.0993047863604143|4.34|151.0|42|3|anti-sense;L1MB7_dup18811|chr16:12668488-12669499:+|1.2411167367909557|0.0539465565820734|4.52|151.0|53|2|anti-sense;L1MB5_dup2334|chr5:108214771-108216500:-|2.289958270977529|0.0348839245878462|6.04|151.0|104|3|anti-sense;L1MB7_dup19626|chr17:10149532-10150127:+|1.346455529872664|0.0031113494880877|8.76|151.0|28|1|anti-sense;L1MB4_dup2741|chr5:173077694-173078259:-|1.2692260457572235|0.0411520438736725|4.95|151.0|18|1|anti-sense;L1MB7_dup21661|chr20:3937434-3938325:-|2.5089738651819413|0.2469371539629118|3.34|151.0|54|3|anti-sense;L1MA4_dup8699|chr15:50117595-50118352:+|2.5983366147704605|0.0080669638115989|8.33|149.0|50|3|anti-sense;L1MA4_dup5575|chr9:125835422-125836163:+|1.1537605093160392|0.0304458271520372|5.24|149.0|46|3|anti-sense L1MB5_dup4342|chrX:2653448-2654103:+|2.0084201705812377|0.0993047863604143|4.34|151.0|42|3|anti-sense L1MB5_dup4342|chrX:2653448-2654103:+|2.0084201705812377|0.0993047863604143|4.34|151.0|42|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.7446594238281 2 490.745442 979.476331 -0.27761 -0.00013624 0.2438 0.00011965 -0.033807 -1.659E-05 490.7454932444169 35.374 0.92073 39.05 38.771 39.692 3.6762 140 62 3 0 0 0 0.82752 1 6643 6643 2.3027 0 1 261310 40529 9703 25627 25639 46435 46435 -0.014227881366082329 SFSWVALYL 9 Unmodified _SFSWVALYL_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|116|2|anti-sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|116|2|anti-sense MSMS UPN48_class_I_Rep_3 7 543.2859497070312 2 543.286943 1084.55933 NaN NaN NaN NaN NaN NaN NaN 52.636 1 56.234 55.734 56.734 3.5979 0 0 0 0.35339 1 10889 10889 7.9102 0 1 + 40530 30286 25628 25640 46436 46436 0.020435285913663392 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 538.1617431640625 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 12.17 1 12.17 11.67 12.67 0 0 0 0 0.53105 1 44 44 0 0 1 + 40531 28183 25629 25641 46437 46437 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 538.1617431640625 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 21.515 1 21.515 21.015 22.015 0 0 0 0 0.53105 1 2416 2416 0 0 1 + 40532 28183 25629 25641 46438 46438 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 538.161376953125 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 28.928 1 28.928 28.428 29.428 0 0 0 0 0.53105 1 4513 4513 0 0 1 + 40533 28183 25629 25641 46439 46439 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_1 2 538.1614379882812 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 35.779 1 39.455 38.955 39.955 3.6762 0 0 0 0.53105 1 6602 6602 0 0 1 + 40534 28183 25629 25641 46440 46440 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 538.1618041992188 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 36.847 1 40.245 39.745 40.745 3.3988 0 0 0 0.53105 1 6959 6959 0 0 1 + 40535 28183 25629 25641 46441 46441 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 538.1620483398438 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 27.107 1 30.67 30.17 31.17 3.5629 0 0 0 0.53105 1 3439 3439 0 0 1 + 40536 28183 25629 25641 46442 46442 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 538.1632080078125 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 59.388 1 62.868 62.368 63.368 3.4801 0 0 0 0.53105 1 13045 13045 0 0 1 + 40537 28183 25629 25641 46443 46443 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 538.163330078125 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 81.492 1 85.055 84.555 85.555 3.5624 0 0 0 0.53105 1 19433 19433 0 0 1 + 40538 28183 25629 25641 46444 46444 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 538.1611938476562 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 85.823 1 89.429 88.929 89.929 3.6059 0 0 0 0.53105 1 20541 20541 0 0 1 + 40539 28183 25629 25641 46445 46445 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_2 6 538.1619262695312 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 70.898 1 74.434 73.934 74.934 3.5359 0 0 0 0.53105 1 16512 16512 0 0 1 + 40540 28183 25629 25641 46446 46446 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_2 6 538.1611938476562 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 76.145 1 79.746 79.246 80.246 3.6011 0 0 0 0.53105 1 17974 17974 0 0 1 + 40541 28183 25629 25641 46447 46447 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_3 7 538.1612548828125 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 27.209 1 30.965 30.465 31.465 3.7555 0 0 0 0.53105 1 3543 3543 0 0 1 + 40542 28183 25629 25641 46448 46448 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_3 7 538.1618041992188 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 30.34 1 34.055 33.555 34.555 3.7146 0 0 0 0.53105 1 4363 4363 0 0 1 + 40543 28183 25629 25641 46449 46449 -0.2604158518336135 SFSYCCCCGC 10 Unmodified _SFSYCCCCGC_ 0 0 0 REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense REV__L1ME3G_dup13711|chr15:99605958-99607382:+|1.2527851132576695|0.1282448277628158|3.29|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_3 7 538.16259765625 2 538.144152 1074.27375 NaN NaN NaN NaN NaN NaN NaN 74.852 1 78.418 77.918 78.918 3.5659 0 0 0 0.53105 1 17552 17552 0 0 1 + 40544 28183 25629 25641 46450 46450 -0.2604158518336135 SFSYLCFYF 9 Unmodified _SFSYLCFYF_ 0 0 0 REV__L1MCa_dup3744|chr9:5904159-5904474:-|1.177956139830712|0.0569314682165819|4.37|151.0|19|3|anti-sense REV__L1MCa_dup3744|chr9:5904159-5904474:-|1.177956139830712|0.0569314682165819|4.37|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_1 2 588.758056640625 2 588.757161 1175.49977 NaN NaN NaN NaN NaN NaN NaN 73.721 1 77.107 76.607 77.607 3.3861 0 0 0 0.35339 1 18113 18113 7.9102 0 1 + 40545 27201 25630 25642 46451 46451 -0.08096110414317081 SFTEIRTL 8 Unmodified _SFTEIRTL_ 0 0 0 LOR1-int_dup1001|chr13:47958125-47960820:+|1.7808292826041947|0.2874554655018645|2.63|151.0|173|3|anti-sense LOR1-int_dup1001|chr13:47958125-47960820:+|1.7808292826041947|0.2874554655018645|2.63|151.0|173|3|anti-sense LOR1-int_dup1001|chr13:47958125-47960820:+|1.7808292826041947|0.2874554655018645|2.63|151.0|173|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.7665100097656 2 483.766374 965.518196 0.13735 6.6446E-05 0.12383 5.9905E-05 0.26118 0.00012635 483.7663072999085 35.404 0.92422 35.404 35.121 36.045 0 155 65 4 0 0 0 0.82752 2 6373 6373;6378 13.906 0 1 495370 40546 15494 25631 25643 46452;46453 46452 0.03405767551907957 SFTEQVDY 8 Unmodified _SFTEQVDY_ 0 0 0 L1M4b_dup1953|chr8:47667878-47668936:+|1.016306887930498|0.0392020555330814|4.7|151.0|63|2|anti-sense L1M4b_dup1953|chr8:47667878-47668936:+|1.016306887930498|0.0392020555330814|4.7|151.0|63|2|anti-sense L1M4b_dup1953|chr8:47667878-47668936:+|1.016306887930498|0.0392020555330814|4.7|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_2 3 494.7347412109375 2 494.716547 987.418542 NaN NaN NaN NaN NaN NaN NaN 59.898 1 63.171 62.671 63.671 3.2731 0 0 0 0.39624 1 13977 13977 9.3474 4.1168 1 40547 8994 25632 25644 46454 46454 -0.07567094852709033 SFTFWIKY 8 Unmodified _SFTFWIKY_ 0 0 0 L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|18|3|sense L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|18|3|sense L1MEb_dup942|chrX:45048181-45048815:-|1.0448499346720015|0.0140515105919847|6.22|151.0|18|3|sense MSMS UPN48_class_I_Rep_1 5 546.2796020507812 2 546.28166 1090.54877 NaN NaN NaN NaN NaN NaN NaN 41.331 1 44.837 44.337 45.337 3.506 0 0 0 0.40604 1 7521 7521 2.5775 0 1 40548 12990 25633 25645 46455 46455 0.007115459369288146 SFTHHAYQL 9 Unmodified _SFTHHAYQL_ 0 0 0 REV__Tigger4_dup165|chr2:32526070-32528220:+|2.352527062515613|0.1643615067259146|3.84|151.0|74|1|anti-sense REV__Tigger4_dup165|chr2:32526070-32528220:+|2.352527062515613|0.1643615067259146|3.84|151.0|74|1|anti-sense MSMS UPN47_class_I_Rep_3 4 552.2664794921875 2 552.267073 1102.51959 NaN NaN NaN NaN NaN NaN NaN 85.973 1 89.345 88.845 89.845 3.3716 0 0 0 0.38784 1 21547 21547 3.5965 0.31518 1 + 40549 32777 25634 25646 46456 46456 -0.027565983593376586 SFTINILKIAQ 11 Unmodified _SFTINILKIAQ_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|264|3|anti-sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|264|3|anti-sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|264|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 624.8745727539062 2 624.371538 1246.72852 0.42772 0.00026706 0.071468 4.4623E-05 0.49919 0.00031168 624.3715515160592 92.074 0.5062 95.7 95.52 96.026 3.626 119 71 2 0 0 0 0.66059 1 22145 22145 2.2828 0.95324 1 951930 40550 8221 25635 25647 46457 46457 0.11502805154077578 SFTLPFPFL 9 Unmodified _SFTLPFPFL_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|226|2|anti-sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|226|2|anti-sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|226|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 534.79150390625 2 534.791861 1067.56917 -0.08052 -4.3062E-05 -0.28379 -0.00015177 -0.36431 -0.00019483 534.7916027176782 28.673 1.2172 32.439 31.997 33.214 3.7662 260 104 3 0 0 0 0.11897 1 4462 4462 30.225 0 1 882320 40551 8515 25636 25648 46458 46458 0.03808716596768136 SFTTERAP 8 Unmodified _SFTTERAP_ 0 0 0 REV__THE1A-int_dup234|chr2:231748067-231749539:+|1.53795246236875|0.0258092791421057|5.9|151.0|54|1|anti-sense REV__THE1A-int_dup234|chr2:231748067-231749539:+|1.53795246236875|0.0258092791421057|5.9|151.0|54|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 454.7273864746094 2 454.727249 907.439946 -0.27653 -0.00012574 0.1196 5.4387E-05 -0.15692 -7.1358E-05 454.72693945349823 20.388 0.22381 20.388 20.226 20.45 0 29 21 2 0 0 0 0.82752 1 2104 2104 4.3292 0 1 32352 + 40552 32211 25637 25649 46459 46459 -0.01747665033337853 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 528.2739868164062 2 528.274032 1054.53351 0.33423 0.00017656 -0.84347 -0.00044558 -0.50924 -0.00026902 528.2735328196427 90.923 0.27811 90.923 90.702 90.98 0 56 27 3 0 0 0 0.21503 2 21936 21897;21936 43.858 2.0187 1 9304000 + 40553 17671 25638 25650 46460;46461 46461 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 528.2754516601562 2 528.274032 1054.53351 0.33426 0.00017658 -0.033743 -1.7825E-05 0.30052 0.00015876 528.273936346334 91.029 0.30746 91.029 90.951 91.258 0 48 28 3 0 0 0 0.21664 2 22032 21970;22032 41.84 1.8899 1 718470 + 40554 17671 25638 25650 46462;46463 46463 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 528.2733154296875 2 528.274032 1054.53351 0.33409 0.00017649 -0.36112 -0.00019077 -0.02703 -1.4279E-05 528.2736653328652 91.395 0.065727 91.395 91.336 91.402 0 5 4 2 0 0 0 0.52083 1 22060 22060 9.3831 0 1 67636 + 40555 17671 25638 25650 46464 46464 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MSMS UPN46_class_I_Rep_3 1 528.2738037109375 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 91.504 1 91.504 91.004 92.004 0 0 0 0 0.53105 1 22108 22108 13.906 0 1 + 40556 17671 25638 25650 46465 46465 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.2740478515625 2 528.274032 1054.53351 0.40275 0.00021276 -0.14927 -7.8855E-05 0.25348 0.00013391 528.273855168659 85.77 0.95631 89.386 88.84 89.796 3.6153 291 124 3 0 0 0 0.21503 7 21442 21292;21320;21381;21410;21442;21474;21506 43.858 2.0187 1 1048800 + 40557 17671 25638 25650 46466;46467;46468;46469;46470;46471;46472 46470 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MSMS UPN47_class_I_Rep_1 2 528.2740478515625 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 86.241 1 89.856 89.356 90.356 3.6153 0 0 0 0.53105 1 21539 21539 27.629 1.3607 1 + 40558 17671 25638 25650 46473 46473 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 528.2738647460938 2 528.274032 1054.53351 0.28967 0.00015302 -0.07485 -3.9542E-05 0.21482 0.00011348 528.2738895581243 85.691 0.94395 89.124 88.765 89.709 3.4329 337 124 4 0 0 0 0.27684 4 21268 21268;21388;21417;21451 36.127 1.7253 1 1103800 + 40559 17671 25638 25650 46474;46475;46476;46477 46474 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.2741088867188 2 528.274032 1054.53351 0.41045 0.00021683 -0.20218 -0.00010681 0.20827 0.00011002 528.2738206000579 85.949 0.53673 89.32 89.212 89.748 3.3716 147 61 4 0 0 0 0.21664 2 21603 21571;21603 41.84 1.8899 1 1267400 + 40560 17671 25638 25650 46478;46479 46479 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.2744140625 2 528.274032 1054.53351 0.41075 0.00021699 -0.1406 -7.4275E-05 0.27015 0.00014271 528.2739263005233 86.692 0.11261 90.072 89.978 90.091 3.3801 18 13 2 0 0 0 0.31818 1 21725 21725 27.629 1.3607 1 121710 + 40561 17671 25638 25650 46480 46480 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.775390625 2 528.274032 1054.53351 0.41151 0.00021739 -0.07567 -3.9974E-05 0.33584 0.00017742 528.2739534521772 86.733 0.093285 90.113 90.047 90.14 3.3801 17 12 2 0 0 0 0.41718 1 21739 21739 18.146 0 1 74141 + 40562 17671 25638 25650 46481 46481 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MSMS UPN47_class_I_Rep_3 4 528.274169921875 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 86.318 1 89.691 89.191 90.191 3.3724 0 0 0 0.53105 1 21635 21635 22.736 0 1 + 40563 17671 25638 25650 46482 46482 0.008426343491009902 SFVEIGFLSG 10 Unmodified _SFVEIGFLSG_ 0 0 0 REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF MSMS UPN47_class_I_Rep_3 4 528.2742309570312 2 528.274032 1054.53351 NaN NaN NaN NaN NaN NaN NaN 86.441 1 89.821 89.321 90.321 3.3801 0 0 0 0.53105 1 21666 21666 41.84 1.8899 1 + 40564 17671 25638 25650 46483 46483 0.008426343491009902 SFVGNGRCHE 10 Unmodified _SFVGNGRCHE_ 0 0 0 REV__L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|36|3|anti-sense REV__L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|36|3|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2147216796875 2 553.245815 1104.47708 NaN NaN NaN NaN NaN NaN NaN 116.51 1 120.01 119.51 120.51 3.4965 0 0 0 0.53105 1 28448 28448 1.3295 0.5359 1 + 40565 26896 25639 25651 46484 46484 -0.07098316759220324 SFVHVCWPF 9 Unmodified _SFVHVCWPF_ 0 0 0 REV__L1PA7_dup2843|chr4:461886-463919:+|3.153368598789584|0.4056307467070639|2.96|150.0|95|2|anti-sense REV__L1PA7_dup2843|chr4:461886-463919:+|3.153368598789584|0.4056307467070639|2.96|150.0|95|2|anti-sense MSMS UPN48_class_I_Rep_1 5 561.2677612304688 2 561.265487 1120.51642 NaN NaN NaN NaN NaN NaN NaN 40.192 1 43.697 43.197 44.197 3.5048 0 0 0 0.26661 1 7185 7185 12.532 1.7076 1 + 40566 30058 25640 25652 46485 46485 -0.039015647377254936 SFVIKFHMCF 10 Unmodified _SFVIKFHMCF_ 0 0 0 REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|205|2|anti-sense REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|205|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 629.808837890625 2 629.809205 1257.60386 0.53162 0.00033482 -0.51803 -0.00032626 0.013588 8.5579E-06 629.808574077331 65.334 0.28483 68.788 68.548 68.833 3.4541 22 19 2 0 0 0 0.54822 1 14825 14825 5.7319 0 1 80471 + 40567 29008 25641 25653 46486 46486 -0.014641068584523964 SFVIKFHMCF 10 Unmodified _SFVIKFHMCF_ 0 0 0 REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|205|2|anti-sense REV__L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|205|2|anti-sense MSMS UPN48_class_I_Rep_3 7 629.8086547851562 2 629.809205 1257.60386 NaN NaN NaN NaN NaN NaN NaN 64.807 1 68.315 67.815 68.815 3.5083 0 0 0 0.53105 1 14596 14596 1.4819 0 1 + 40568 29008 25641 25653 46487 46487 -0.014641068584523964 SFVNFVYLF 9 Unmodified _SFVNFVYLF_ 0 0 0 L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|204|1|anti-sense L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|204|1|anti-sense L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|204|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.2952880859375 2 568.294768 1134.57498 0.49917 0.00028368 -0.093423 -5.3092E-05 0.40575 0.00023058 568.294443423144 67.699 0.19781 71.195 71.049 71.246 3.4964 25 17 2 0 0 0 0.35081 1 15555 15555 10.824 0 1 73866 40569 9497 25642 25654 46488 46488 0.013078151084073397 SFVNFVYLF 9 Unmodified _SFVNFVYLF_ 0 0 0 L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|204|1|anti-sense L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|204|1|anti-sense L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|204|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.79638671875 2 568.294768 1134.57498 0.50721 0.00028824 -0.06525 -3.7081E-05 0.44196 0.00025116 568.2946542500416 67.583 0.41689 71.091 70.929 71.346 3.5077 61 38 2 0 0 0 0.48643 1 15401 15401 2.0598 0 1 104980 40570 9497 25642 25654 46489 46489 0.013078151084073397 SFVQTGPSF 9 Unmodified _SFVQTGPSF_ 0 0 0 REV__MER6_dup680|chr14:49797796-49798626:+|1.887197265545522|0.3266534227305364|2.53|151.0|24|3|sense REV__MER6_dup680|chr14:49797796-49798626:+|1.887197265545522|0.3266534227305364|2.53|151.0|24|3|sense MSMS UPN47_class_I_Rep_1 2 485.237060546875 2 485.23745 968.460347 NaN NaN NaN NaN NaN NaN NaN 36.195 1 39.867 39.367 40.367 3.6721 0 0 0 0.38784 1 6728 6728 3.5965 1.2938 1 + 40571 31479 25643 25655 46490 46490 -0.025144943735199377 SFVRERKQK 9 Unmodified _SFVRERKQK_ 0 0 0 L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.3439331054688 2 589.343646 1176.67274 0.57868 0.00034104 -1.263 -0.00074436 -0.68435 -0.00040332 589.3430325995214 88.256 0.099739 91.703 91.671 91.77 3.4471 15 9 2 0 0 0 0.50088 1 21964 21964 0.52476 0 1 86959 40572 11604 25644 25656 46491 46491 0.09147016757128767 SFVRERKQK 9 Unmodified _SFVRERKQK_ 0 0 0 L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.343646 1176.67274 0.54441 0.00032085 -1.1947 -0.00070406 -0.65024 -0.00038321 589.844439173203 91.482 0.12636 91.482 91.424 91.55 0 0.068752 0.00013014 NaN 0.52476 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 117840 40573 11604 25644 25656 0.09147016757128767 SFVRERKQK 9 Unmodified _SFVRERKQK_ 0 0 0 L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 589.343646 1176.67274 0.49161 0.00028973 -0.78759 -0.00046416 -0.29598 -0.00017443 589.8451106709273 87.849 0.040459 91.236 91.206 91.247 3.3873 -0.17703 0.00060993 NaN 0.52476 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 41758 40574 11604 25644 25656 0.09147016757128767 SFVRERKQK 9 Unmodified _SFVRERKQK_ 0 0 0 L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|33|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 589.343646 1176.67274 0.52853 0.00031148 -1.6889 -0.00099537 -1.1604 -0.00068388 589.3428330475016 87.442 0.055824 91.232 91.214 91.27 3.7905 -0.18101 -0.00045248 NaN 0.52476 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 224970 40575 11604 25644 25656 0.09147016757128767 SFVSHLSGVI 10 Unmodified _SFVSHLSGVI_ 0 0 0 L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.2982788085938 2 523.287474 1044.5604 0.26498 0.00013866 1.9698 0.0010308 2.2348 0.0011695 523.2884591949482 67.422 0.25526 70.783 70.696 70.951 3.3611 33 21 2 0 0 0 0.41718 1 16220 16220 18.146 4.2403 1 94181 40576 12232 25645 25657 46492 46492 0.039897429602888224 SFVSHLSGVI 10 Unmodified _SFVSHLSGVI_ 0 0 0 L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 523.2982177734375 2 523.287474 1044.5604 NaN NaN NaN NaN NaN NaN NaN 67.742 1 71.103 70.603 71.603 3.3611 0 0 0 0.53105 1 16309 16309 24.021 4.7636 1 40577 12232 25645 25657 46493 46493 0.039897429602888224 SFVSHLSGVI 10 Unmodified _SFVSHLSGVI_ 0 0 0 L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.2982177734375 2 523.287474 1044.5604 -0.023297 -1.2191E-05 2.652 0.0013878 2.6287 0.0013756 523.2886923336922 68.011 0.28778 71.281 71.142 71.43 3.2696 28 22 2 0 0 0 0.35076 2 16437 16398;16437 24.021 4.5816 1 59176 40578 12232 25645 25657 46494;46495 46495 0.039897429602888224 SFVSHLSGVI 10 Unmodified _SFVSHLSGVI_ 0 0 0 L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense L1ME1_dup15681|chr8:120667658-120668448:-|1.2679782552458272|0.0247293867059826|5.68|151.0|34|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 523.2986450195312 2 523.287474 1044.5604 -0.025137 -1.3154E-05 2.4082 0.0012602 2.383 0.001247 523.2884384860771 67.676 0.23726 70.939 70.801 71.038 3.2636 38 21 3 0 0 0 0.84575 1 16347 16347 24.021 4.7636 1 145800 40579 12232 25645 25657 46496 46496 0.039897429602888224 SFVSLCINC 9 Unmodified _SFVSLCINC_ 0 0 0 REV__L1MA8_dup435|chr1:173766787-173767928:-|3.606175648669253|0.2266545321679184|3.99|151.0|62|2|anti-sense REV__L1MA8_dup435|chr1:173766787-173767928:-|3.606175648669253|0.2266545321679184|3.99|151.0|62|2|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2779235839844 2 493.227713 984.440874 NaN NaN NaN NaN NaN NaN NaN 33.778 1 37.439 36.939 37.939 3.6607 0 0 0 0.38478 1 5369 5369 4.3292 0 1 + 40580 25558 25646 25658 46497 46497 -0.05196909980304554 SFVWTSKL 8 Unmodified _SFVWTSKL_ 0 0 0 REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|89|1|anti-sense REV__HERVK9-int_dup631|chr19:52305120-52307502:-|1.3001610375580042|0.0751605321358765|4.11|151.0|89|1|anti-sense MSMS UPN46_class_I_Rep_3 1 484.2655944824219 2 484.26601 966.517468 NaN NaN NaN NaN NaN NaN NaN 61.524 1 61.524 61.024 62.024 0 0 0 0 0.40738 1 13697 13697 0.79363 0 1 + 40581 23848 25647 25659 46498 46498 0.032869729028334405 SFVYPLWVV 9 Unmodified _SFVYPLWVV_ 0 0 0 REV__L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|427|3|anti-sense REV__L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|427|3|anti-sense MSMS UPN48_class_I_Rep_1 5 555.303466796875 2 555.305136 1108.59572 NaN NaN NaN NaN NaN NaN NaN 59.325 1 62.805 62.305 63.305 3.4801 0 0 0 0.34056 1 13025 13025 8.5933 1.304 1 + 40582 29156 25648 25660 46499 46499 0.0457640548809195 SFWSKGQACLL 11 Unmodified _SFWSKGQACLL_ 0 0 0 LTR40a_dup1163|chr8:129932201-129932716:+|1.744330090952039|0.0065964489867506|8.05|151.0|15|3|sense LTR40a_dup1163|chr8:129932201-129932716:+|1.744330090952039|0.0065964489867506|8.05|151.0|15|3|sense LTR40a_dup1163|chr8:129932201-129932716:+|1.744330090952039|0.0065964489867506|8.05|151.0|15|3|sense MSMS UPN48_class_I_Rep_2 6 620.3168334960938 2 620.313166 1238.61178 NaN NaN NaN NaN NaN NaN NaN 37.537 1 41.239 40.739 41.739 3.7021 0 0 0 0.38417 1 6434 6434 2.9952 0.93549 1 40583 15635 25649 25661 46500 46500 0.002017436627056668 SFYDKLDKKT 10 Unmodified _SFYDKLDKKT_ 0 0 0 REV__nc|ENSG00000138668|Q14103-4|HNRNPD REV__nc|ENSG00000138668|Q14103-4|HNRNPD MSMS UPN46_class_I_Rep_3 1 622.828857421875 2 622.829703 1243.64485 NaN NaN NaN NaN NaN NaN NaN 81.25 1 81.25 80.75 81.75 0 0 0 0 0.53105 1 19181 19181 1.1933 0.23107 1 + 40584 19282 25650 25662 46501 46501 0.03277648986386339 SFYFVKYV 8 Unmodified _SFYFVKYV_ 0 0 0 REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|368|3|anti-sense REV__L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|368|3|anti-sense MSMS UPN48_class_I_Rep_1 5 526.7776489257812 2 526.776211 1051.53787 NaN NaN NaN NaN NaN NaN NaN 26.024 1 29.59 29.09 30.09 3.5667 0 0 0 0.40625 1 3126 3126 2.3027 0.24298 1 + 40585 24001 25651 25663 46502 46502 0.01416143562664729 SFYLAAASF 9 Unmodified _SFYLAAASF_ 0 0 0 MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_1 5 488.7426452636719 2 488.742368 975.470183 NaN NaN NaN NaN NaN NaN NaN 59.454 1 62.934 62.434 63.434 3.4801 0 0 0 0.22485 1 13065 13065 14.838 0 1 40586 16312 25652 25664 46503 46503 -0.018533063681616113 SFYLAAASF 9 Unmodified _SFYLAAASF_ 0 0 0 MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_2 6 488.7422180175781 2 488.742368 975.470183 NaN NaN NaN NaN NaN NaN NaN 59.401 1 62.888 62.388 63.388 3.4868 0 0 0 0.22485 1 13027 13027 14.838 0 1 40587 16312 25652 25664 46504 46504 -0.018533063681616113 SFYLAAASF 9 Unmodified _SFYLAAASF_ 0 0 0 MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MLT1C_dup547|chr1:77707146-77707584:-|2.1830687987024247|0.4015252878630657|2.44|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 488.7422180175781 2 488.742368 975.470183 NaN NaN NaN NaN NaN NaN NaN 59.391 1 62.914 62.414 63.414 3.5231 0 0 0 0.29868 1 12958 12958 10.824 0 1 40588 16312 25652 25664 46505 46505 -0.018533063681616113 SFYLCFAC 8 Unmodified _SFYLCFAC_ 0 0 0 REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|96|2|anti-sense REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|96|2|anti-sense MSMS UPN48_class_I_Rep_2 6 476.8565673828125 2 477.198425 952.382296 NaN NaN NaN NaN NaN NaN NaN 113.12 1 116.78 116.28 117.28 3.6648 0 0 0 0.40738 1 26982 26982 0.79363 0 1 + 40589 25153 25653 25665 46506 46506 -0.0957996655478155 SFYLGNQHPR 10 Unmodified _SFYLGNQHPR_ 0 0 0 REV__MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|59|1|anti-sense REV__MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|59|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 406.8720703125 3 406.871995 1217.59415 -0.098435 -4.0051E-05 0.11308 4.6009E-05 0.014644 5.9583E-06 406.8720027090135 34.286 1.173 34.286 33.963 35.136 0 219 85 4 0 0 0 0.56107 1 6176 6176 3.0723 3.0723 1 619530 + 40590 31924 25654 25666 46507 46507 -0.0059383554796568205 SFYQLSQL 8 Unmodified _SFYQLSQL_ 0 0 0 REV__ENSG00000171488|ENST00000370454|LRRC8C REV__ENSG00000171488|ENST00000370454|LRRC8C MULTI-MSMS UPN48_class_I_Rep_3 7 493.25372314453125 2 493.2531 984.491647 0.30138 0.00014866 -0.010712 -5.2837E-06 0.29067 0.00014337 493.25302664622495 71.723 0.5875 75.25 74.971 75.558 3.5266 78 56 2 0 0 0 0.82752 1 16647 16647 10.074 0 1 191080 + 40591 20408 25655 25667 46508 46508 -0.0012192133942789951 SFYSALHY 8 Unmodified _SFYSALHY_ 0 0 0 L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|115|3|anti-sense L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|115|3|anti-sense L1MEd_dup13908|chr10:11310762-11312634:+|4.480665487504866|0.0896937520836688|5.64|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.233642578125 2 494.232168 986.449782 NaN NaN NaN NaN NaN NaN NaN 114.95 1 118.59 118.09 119.09 3.6433 0 0 0 0.40738 1 27343 27343 0.79363 0 1 40592 13167 25656 25668 46509 46509 -0.04398477027950776 SFYSRLIWY 9 Unmodified _SFYSRLIWY_ 0 0 0 L1MC3_dup12565|chr20:37292614-37293082:-|1.1784879079174944|0.2163823966555496|2.45|151.0|26|3|anti-sense L1MC3_dup12565|chr20:37292614-37293082:-|1.1784879079174944|0.2163823966555496|2.45|151.0|26|3|anti-sense L1MC3_dup12565|chr20:37292614-37293082:-|1.1784879079174944|0.2163823966555496|2.45|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_1 5 617.816650390625 2 617.816399 1233.61824 NaN NaN NaN NaN NaN NaN NaN 30.124 1 33.666 33.166 34.166 3.542 0 0 0 0.39428 1 4282 4282 2.0598 0.21551 1 40593 11314 25657 25669 46510 46510 0.010780048857213842 SFYSSKDSE 9 Unmodified _SFYSSKDSE_ 0 0 0 REV__ENSG00000011275|ENST00000389902|RNF216 REV__ENSG00000011275|ENST00000389902|RNF216 MSMS UPN47_class_I_Rep_2 3 525.2377319335938 2 525.224736 1048.43492 NaN NaN NaN NaN NaN NaN NaN 37.76 1 41.148 40.648 41.648 3.3879 0 0 0 0.37692 1 7236 7236 6.2058 0.44535 1 + 40594 17578 25658 25670 46511 46511 -0.08736013686598199 SFYSSKDSE 9 Unmodified _SFYSSKDSE_ 0 0 0 REV__ENSG00000011275|ENST00000389902|RNF216 REV__ENSG00000011275|ENST00000389902|RNF216 MSMS UPN47_class_I_Rep_3 4 525.2378540039062 2 525.224736 1048.43492 NaN NaN NaN NaN NaN NaN NaN 37.858 1 41.099 40.599 41.599 3.2414 0 0 0 0.37692 1 7306 7306 6.2058 0.44535 1 + 40595 17578 25658 25670 46512 46512 -0.08736013686598199 SFYSSKDSE 9 Unmodified _SFYSSKDSE_ 0 0 0 REV__ENSG00000011275|ENST00000389902|RNF216 REV__ENSG00000011275|ENST00000389902|RNF216 MSMS UPN47_class_I_Rep_3 4 525.237548828125 2 525.224736 1048.43492 NaN NaN NaN NaN NaN NaN NaN 37.89 1 41.131 40.631 41.631 3.2414 0 0 0 0.37692 1 7316 7316 6.2058 0.44535 1 + 40596 17578 25658 25670 46513 46513 -0.08736013686598199 SFYYKFCY 8 Unmodified _SFYYKFCY_ 0 0 0 REV__L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|59|3|anti-sense REV__L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_3 7 560.7648315429688 2 560.744053 1119.47355 NaN NaN NaN NaN NaN NaN NaN 114.69 1 118.34 117.84 118.84 3.6511 0 0 0 0.40604 1 27276 27276 2.5775 0 1 + 40597 27204 25659 25671 46514 46514 -0.08140379585802293 SGAAPFHTM 9 Unmodified _SGAAPFHTM_ 0 0 0 ENST00000375943.6_1_1:15769060-15773263:+|nuORF ENST00000375943.6_1_1:15769060-15773263:+|nuORF ENST00000375943.6_1_1:15769060-15773263:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 459.7106628417969 2 459.710545 917.406537 -0.075249 -3.4593E-05 0.22409 0.00010302 0.14885 6.8426E-05 459.7106994343619 96.862 1.6942 100.28 99.313 101.01 3.414 485 239 3 0 0 0 0.40174 1 23987 23987 7.9102 3.1541 1 9614400 40598 6447 25660 25672 46515 46515 -0.05546990076879865 SGALFTNDKF 10 Unmodified _SGALFTNDKF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS UPN48_class_I_Rep_3 7 550.2750244140625 2 550.274564 1098.53457 NaN NaN NaN NaN NaN NaN NaN 42.366 1 46.007 45.507 46.507 3.6415 0 0 0 0.53105 1 7755 7755 1.3295 0 1 40599 1579 25661 25673 46516 46516 -0.010751512820206699 SGAPNVEHPI 10 Unmodified _SGAPNVEHPI_ 0 0 0 L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|42|3|sense L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|42|3|sense L1MEf_dup6518|chr9:112287641-112288676:-|1.909273852240024|0.0142107734985878|7.07|151.0|42|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.7595520019531 2 510.759081 1019.50361 0.19885 0.00010156 -0.0064225 -3.2804E-06 0.19243 9.8283E-05 510.7590309137988 56.734 0.82953 60.277 59.905 60.735 3.5427 190 80 3 0 0 0 0.505 1 12069 12069 11.495 11.495 1 1168700 40600 13307 25662 25674 46517 46517 -0.005363045962326396 SGCDMCTFED 10 Unmodified _SGCDMCTFED_ 0 0 0 REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MSMS UPN48_class_I_Rep_3 7 554.1757202148438 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 26.967 1 30.722 30.222 31.222 3.7555 0 0 0 0.53105 1 3483 3483 0.40072 0.40072 1 + 40601 21149 25663 25675 46518 46518 -0.21343238958866095 SGCILLDWEH 10 Unmodified _SGCILLDWEH_ 0 0 0 REV__L1P3b_dup33|chr7:37762982-37764435:+|1.1918532753262188|0.0973249045489533|3.61|151.0|61|2|anti-sense REV__L1P3b_dup33|chr7:37762982-37764435:+|1.1918532753262188|0.0973249045489533|3.61|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_2 6 586.7748413085938 2 586.773874 1171.53319 NaN NaN NaN NaN NaN NaN NaN 22.926 1 26.569 26.069 27.069 3.6432 0 0 0 0.53105 1 2416 2416 1.6526 0.85899 1 + 40602 28902 25664 25676 46519 46519 -0.04571108642426225 SGCKMLYHDGF 11 Unmodified _SGCKMLYHDGF_ 0 0 0 L1ME3D_dup939|chr3:194418064-194418728:+|1.0174605939286612|0.1314064752443553|2.95|151.0|47|3|anti-sense L1ME3D_dup939|chr3:194418064-194418728:+|1.0174605939286612|0.1314064752443553|2.95|151.0|47|3|anti-sense L1ME3D_dup939|chr3:194418064-194418728:+|1.0174605939286612|0.1314064752443553|2.95|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 629.2709350585938 2 629.273183 1256.53181 NaN NaN NaN NaN NaN NaN NaN 43.703 1 47.341 46.841 47.841 3.6385 0 0 0 0.38417 1 8165 8165 2.2828 0.63015 1 40603 12803 25665 25677 46520 46520 -0.08619066002825093 SGDEEEEEDGA 11 Unmodified _SGDEEEEEDGA_ 0 0 0 REV__ENSG00000118160|ENST00000236877|SLC8A2 REV__ENSG00000118160|ENST00000236877|SLC8A2 MSMS UPN48_class_I_Rep_2 6 583.7019653320312 2 583.702019 1165.38949 NaN NaN NaN NaN NaN NaN NaN 113.29 1 116.95 116.45 117.45 3.6639 0 0 0 0.38417 1 27030 27030 1.1933 0 1 + 40604 18647 25666 25678 46521 46521 -0.18659328730291236 SGDKPYYGI 9 Unmodified _SGDKPYYGI_ 0 0 0 REV__L1MA7_dup6284|chr11:117992035-117993051:-|1.3339420807382287|0.4115463295904447|1.7|151.0|18|2|sense REV__L1MA7_dup6284|chr11:117992035-117993051:-|1.3339420807382287|0.4115463295904447|1.7|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 499.9932556152344 2 500.242732 998.470912 NaN NaN NaN NaN NaN NaN NaN 28.136 1 31.878 31.378 32.378 3.7424 0 0 0 0.39598 1 3788 3788 1.6526 0.96225 1 + 40605 25516 25667 25679 46522 46522 -0.028385117190850906 SGDLVIVVDMY 11 Unmodified _SGDLVIVVDMY_ 0 0 0 REV__ITGA10|p.E239Rfs*11|1|0.04|ENSG00000143127|chr1:145904095-145904095|C/-|frameshift_variant REV__ITGA10|p.E239Rfs*11|1|0.04|ENSG00000143127|chr1:145904095-145904095|C/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 404.5408020019531 3 404.205652 1209.59513 -0.0067515 -2.729E-06 0.89228 0.00036067 0.88553 0.00035794 404.5402052584254 61.244 0.34935 64.625 64.491 64.841 3.3815 28 23 2 0 0 0 0.4608 1 14361 14361 4.4062 2.4998 1 74779 + 40606 19425 25668 25680 46523 46523 -0.0012880201393272728 SGDYLPAWLP 10 Unmodified _SGDYLPAWLP_ 0 0 0 L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|9|1|sense L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|9|1|sense L1MA6_dup23|chr1:41167702-41170310:-|15.213264853195728|0.4095800054028756|5.22|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 559.7793579101562 2 559.779482 1117.54441 NaN NaN NaN NaN NaN NaN NaN 47.495 1 51.017 50.517 51.517 3.5219 0 0 0 0.53105 1 9393 9393 4.3292 0.73274 1 40607 9972 25669 25681 46524 46524 -0.009659632766442883 SGEAYYRR 8 Unmodified _SGEAYYRR_ 0 0 0 REV__ENST00000463990.1_1_2:102953760-102955562:+|nuORF REV__ENST00000463990.1_1_2:102953760-102955562:+|nuORF MSMS UPN47_class_I_Rep_2 3 500.7831115722656 2 501.243598 1000.47264 NaN NaN NaN NaN NaN NaN NaN 20.718 1 24.125 23.625 24.625 3.4074 0 0 0 0.40746 1 2199 2199 0.69038 0 1 + 40608 22454 25670 25682 46525 46525 -0.027574579104793884 SGEGARTSR 9 Unmodified _SGEGARTSR_ 0 0 0 ENST00000453835.1_1_22:50753074-50753326:+|nuORF ENST00000453835.1_1_22:50753074-50753326:+|nuORF ENST00000453835.1_1_22:50753074-50753326:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 460.2296447753906 2 460.730855 919.447156 0.13623 6.2768E-05 0.83363 0.00038408 0.96986 0.00044685 460.73123180561936 54.655 0.28194 54.655 54.575 54.857 0 45 34 2 0 0 0 0.12354 1 11832 11832 3.5965 0.70727 1 212480 40609 6826 25671 25683 46526 46526 -0.01578932432903457 SGEKLKDK 8 Unmodified _SGEKLKDK_ 0 0 0 REV__ENST00000530261.1_1_11:77851057-77860099:+|nuORF REV__ENST00000530261.1_1_11:77851057-77860099:+|nuORF MSMS UPN48_class_I_Rep_2 6 452.75799560546875 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 18.584 1 22.235 21.735 22.735 3.6509 0 0 0 0.40746 1 1269 1269 0.69038 0 1 + 40610 22837 25672 25684 46527 46527 0.04693481034848901 SGGDDFQQIR 10 Unmodified _SGGDDFQQIR_ 0 0 0 REV__nc|ENSG00000110075|Q5H9R7-6|PPP6R3 REV__nc|ENSG00000110075|Q5H9R7-6|PPP6R3 MSMS UPN47_class_I_Rep_3 4 561.7224731445312 2 561.762352 1121.51015 NaN NaN NaN NaN NaN NaN NaN 75.744 1 79.001 78.501 79.501 3.2573 0 0 0 0.53105 1 18807 18807 1.4819 0.68827 1 + 40611 18424 25673 25685 46528 46528 -0.04574411435532966 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron MULTI-SECPEP UPN47_class_I_Rep_2 3 608.267333984375 1 608.2093 607.202024 0.51686 0.00031436 -1.9924 -0.0012118 -1.4755 -0.00089741 608.2103722534113 53.582 0.87045 56.909 56.785 57.655 3.3266 83 56 2 0 0 0 0.12551 1 12217 12217 0 0 1 62859 + 40612 19781 25674 25686 46529 46529 -0.11728929167406932 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron MULTI-SECPEP UPN47_class_I_Rep_2 3 607.8036499023438 1 608.2093 607.202024 0.51899 0.00031566 -2.1544 -0.0013104 -1.6355 -0.0009947 608.2101311259546 57.365 0.50137 60.656 60.432 60.934 3.2912 51 40 2 0 0 0 0.12551 1 13252 13252 0 0 1 59975 + 40613 19781 25674 25686 46530 46530 -0.11728929167406932 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron MULTI-SECPEP UPN47_class_I_Rep_2 3 608.2672119140625 1 608.2093 607.202024 0.51745 0.00031472 -2.873 -0.0017474 -2.3555 -0.0014327 608.2101386571371 54.571 0.74858 57.889 57.647 58.396 3.3187 61 38 2 0 0 0 0.12551 1 12289 12289 0 0 1 60027 + 40614 19781 25674 25686 46531 46531 -0.11728929167406932 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron REV__ENSG00000156017.13,CARNMT1,chr9,-,I5.1,74998777,74999729|25|4.06|3|intron MULTI-MATCH UPN47_class_I_Rep_1 2 1 608.2093 607.202024 0.36345 0.00022105 -2.6713 -0.0016247 -2.3078 -0.0014036 608.2099093090936 54.717 0.18166 58.219 58.091 58.273 3.5014 0.16471 9.4635E-05 NaN 0 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 49035 + 40615 19781 25674 25686 -0.11728929167406932 SGGMESALRL 10 Unmodified _SGGMESALRL_ 0 0 0 REV__MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|17|2|sense REV__MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 510.75946044921875 2 510.760766 1019.50698 NaN NaN NaN NaN NaN NaN NaN 50.866 1 54.534 54.034 55.034 3.6679 0 0 0 0.53105 1 10427 10427 10.8 2.0541 1 + 40616 31192 25675 25687 46532 46532 -0.0019937781389671727 SGGMESALRL 10 Unmodified _SGGMESALRL_ 0 0 0 REV__MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|17|2|sense REV__MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 510.7579345703125 2 510.760766 1019.50698 NaN NaN NaN NaN NaN NaN NaN 50.899 1 54.509 54.009 55.009 3.6105 0 0 0 0.53105 1 10375 10375 15.248 2.206 1 + 40617 31192 25675 25687 46533 46533 -0.0019937781389671727 SGGMESALRL 10 Unmodified _SGGMESALRL_ 0 0 0 REV__MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|17|2|sense REV__MER21B_dup1259|chr8:94938364-94939131:+|1.367505614363834|0.2103033656567974|2.7|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 510.7586669921875 2 510.760766 1019.50698 NaN NaN NaN NaN NaN NaN NaN 53.37 1 56.954 56.454 57.454 3.5836 0 0 0 0.53105 1 11117 11117 29.841 9.426 1 + 40618 31192 25675 25687 46534 46534 -0.0019937781389671727 SGGRLKRP 8 Unmodified _SGGRLKRP_ 0 0 0 ENSG00000182255|ENST00000328224|KCNA4 ENSG00000182255|ENST00000328224|KCNA4 ENSG00000182255|ENST00000328224|KCNA4 MSMS UPN48_class_I_Rep_1 5 435.7667541503906 2 435.767043 869.519533 NaN NaN NaN NaN NaN NaN NaN 79.461 1 82.996 82.496 83.496 3.5352 0 0 0 0.40604 1 18969 18969 2.5775 0 1 40619 4943 25676 25688 46535 46535 0.07955446431321889 SGHVKTQL 8 Unmodified _SGHVKTQL_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-SECPEP UPN47_class_I_Rep_2 3 435.2452087402344 2 435.245609 868.476666 -0.76141 -0.0003314 -0.51739 -0.00022519 -1.2788 -0.00055659 435.2452785751746 14.924 0.26862 18.31 18.221 18.489 3.3864 48 28 2 0 0 0 0.72333 1 677 677 5.7319 4.25 1 56011 40620 2972 25677 25689 46536 46536 0.03716631583245089 SGHVKTQL 8 Unmodified _SGHVKTQL_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-SECPEP UPN47_class_I_Rep_3 4 435.24493408203125 2 435.245609 868.476666 -1.2619 -0.00054925 0.039799 1.7322E-05 -1.2221 -0.00053193 435.2455542070126 14.963 0.21243 18.329 18.232 18.445 3.3659 44 25 2 0 0 0 0.72333 1 673 673 1.8442 0 1 64994 40621 2972 25677 25689 46537 46537 0.03716631583245089 SGHVKTQL 8 Unmodified _SGHVKTQL_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MATCH UPN47_class_I_Rep_1 2 2 435.245609 868.476666 -0.47613 -0.00020723 -0.60186 -0.00026196 -1.078 -0.00046919 435.2452639944729 14.819 0.26134 18.294 18.191 18.452 3.475 -0.016954 -0.00025729 NaN 17.113 46 28 2 NaN NaN NaN NaN 0 NaN NaN 0 47148 40622 2972 25677 25689 0.03716631583245089 SGHVLARKT 9 Unmodified _SGHVLARKT_ 0 0 0 ENST00000529727.1_1_11:689750-691596:-|nuORF ENST00000529727.1_1_11:689750-691596:-|nuORF ENST00000529727.1_1_11:689750-691596:-|nuORF MSMS UPN48_class_I_Rep_1 5 484.9543151855469 2 484.785433 967.556313 NaN NaN NaN NaN NaN NaN NaN 37.326 1 40.833 40.333 41.333 3.507 0 0 0 0.39518 1 6336 6336 1.8442 1.0506 1 40623 7289 25678 25690 46538 46538 0.07123698257237265 SGIIVVLWG 9 Unmodified _SGIIVVLWG_ 0 0 0 L1M4a2_dup1397|chr11:66145067-66146764:+|4.44045462888747|0.0432638292444369|6.68|151.0|92|2|anti-sense L1M4a2_dup1397|chr11:66145067-66146764:+|4.44045462888747|0.0432638292444369|6.68|151.0|92|2|anti-sense L1M4a2_dup1397|chr11:66145067-66146764:+|4.44045462888747|0.0432638292444369|6.68|151.0|92|2|anti-sense MSMS UPN48_class_I_Rep_3 7 472.2823486328125 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 93.489 1 97.381 96.881 97.881 3.8914 0 0 0 0.38299 1 22157 22157 4.756 0 1 40624 8969 25679 25691 46539 46539 0.08027849799566411 SGIIWKFHRPL 11 Unmodified _SGIIWKFHRPL_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MSMS UPN47_class_I_Rep_2 3 451.93206787109375 3 451.931185 1352.77173 NaN NaN NaN NaN NaN NaN NaN 91.851 1 95.316 94.816 95.816 3.4652 0 0 0 0.38417 1 22721 22721 1.3296 0 1 + 40625 18872 25680 25692 46540 46540 0.10945039722014371 SGKPQEAVY 9 Unmodified _SGKPQEAVY_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS UPN46_class_I_Rep_3 1 489.74786376953125 2 489.748182 977.481811 -0.057656 -2.8237E-05 0.036659 1.7954E-05 -0.020997 -1.0283E-05 489.74816171748506 26.009 0.61596 26.009 25.665 26.281 0 84 54 2 0 0 0 0.39745 2 3595 3595;3646 8.1555 2.3951 1 56750 40626 3109 25681 25693 46541;46542 46541 -0.007831093448203319 SGKRIHLS 8 Unmodified _SGKRIHLS_ 0 0 0 REV__L1MEc_dup2670|chr2:130361016-130361495:-|1.103012061216287|0.2231541490646487|2.31|151.0|1|1|sense REV__L1MEc_dup2670|chr2:130361016-130361495:-|1.103012061216287|0.2231541490646487|2.31|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 449.26708984375 2 449.266876 896.519199 0.025651 1.1524E-05 -0.23134 -0.00010393 -0.20569 -9.2409E-05 449.26667238391667 81.227 0.82244 84.789 84.455 85.278 3.5624 164 98 3 0 0 0 0.82752 1 19328 19328 1.8442 0 1 204470 + 40627 28439 25682 25694 46543 46543 0.06680026711467235 SGKTITKHQ 9 Unmodified _SGKTITKHQ_ 0 0 0 ENSG00000145740|ENST00000396591|SLC30A5;ENST00000507354.5_1_5:68398901-68404190:+|nuORF;nc|ENSG00000145740|Q8TAD4-4|SLC30A5;nc|ENSG00000145740|Q8TAD4-3|SLC30A5 ENSG00000145740|ENST00000396591|SLC30A5 ENSG00000145740|ENST00000396591|SLC30A5 MSMS UPN47_class_I_Rep_1 2 500.2820739746094 2 500.282723 998.550893 NaN NaN NaN NaN NaN NaN NaN 35.074 1 38.76 38.26 39.26 3.6859 0 0 0 0.39598 1 6390 6390 1.6526 0.85899 1 40628 3409 25683 25695 46544 46544 0.05155974674744357 SGKTTFVQR 9 Unmodified _SGKTTFVQR_ 0 0 0 ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF ENSG00000198522|ENST00000610189|GPN1 ENSG00000198522|ENST00000610189|GPN1 MULTI-MSMS UPN46_class_I_Rep_3 1 512.2827758789062 2 512.282723 1022.55089 -0.16635 -8.522E-05 -0.0010588 -5.4241E-07 -0.16741 -8.5763E-05 512.2825968423439 19.804 0.76372 19.804 19.383 20.146 0 108 77 2 0 0 0 0.19092 2 1899 1899;1938 21.59 10.791 1 74720 40629 5437 25684 25696 46545;46546 46545 0.0405197467475773 SGKVKYLW 8 Unmodified _SGKVKYLW_ 0 0 0 REV__MER33_dup6883|chr13:28046408-28046592:-|1.5967705832218049|0.0006828169017039|11.19|150.0|15|3|anti-sense REV__MER33_dup6883|chr13:28046408-28046592:-|1.5967705832218049|0.0006828169017039|11.19|150.0|15|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.78057861328125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 20.38 1 23.997 23.497 24.497 3.6171 0 0 0 0.40738 1 2036 2036 0.79363 0 1 + 40630 31262 25685 25697 46547 46547 0.05850965656793505 SGKVKYLW 8 Unmodified _SGKVKYLW_ 0 0 0 REV__MER33_dup6883|chr13:28046408-28046592:-|1.5967705832218049|0.0006828169017039|11.19|150.0|15|3|anti-sense REV__MER33_dup6883|chr13:28046408-28046592:-|1.5967705832218049|0.0006828169017039|11.19|150.0|15|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7818908691406 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.39 1 116.9 116.4 117.4 3.5057 0 0 0 0.40738 1 27813 27813 0.79363 0 1 + 40631 31262 25685 25697 46548 46548 0.05850965656793505 SGKWPLFTL 9 Unmodified _SGKWPLFTL_ 0 0 0 HERVH-int_dup2098|chr5:76885744-76886587:-|3.269448946210359|0.005647067565466|9.18|149.0|9|2|sense;HERVH-int_dup5578|chr19:52628195-52631191:+|1.612781811949883|0.3794519770853735|2.09|151.0|1|1|sense HERVH-int_dup2098|chr5:76885744-76886587:-|3.269448946210359|0.005647067565466|9.18|149.0|9|2|sense HERVH-int_dup2098|chr5:76885744-76886587:-|3.269448946210359|0.005647067565466|9.18|149.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 524.793212890625 2 524.794935 1047.57532 NaN NaN NaN NaN NaN NaN NaN 66.503 1 69.989 69.489 70.489 3.4866 0 0 0 0.3377 1 15198 15198 8.7454 0.15213 1 40632 8139 25686 25698 46549 46549 0.05343234828296772 SGLDITQKGCU 11 Unmodified _SGLDITQKGCU_ 0 0 0 ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 MSMS UPN48_class_I_Rep_2 6 586.7368774414062 2 586.729592 1171.44463 NaN NaN NaN NaN NaN NaN NaN 112.66 1 116.32 115.82 116.82 3.6648 0 0 0 0.38417 1 26855 26855 0 0 0 40633 5392 25687 25699 46550 46550 -0.13423392507843346 SGLEAGFVFV 10 Unmodified _SGLEAGFVFV_ 0 0 0 L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.2689208984375 2 513.26875 1024.52295 0.2397 0.00012303 -0.080963 -4.1556E-05 0.15874 8.1475E-05 513.2686293980911 72.283 0.6706 75.663 75.379 76.05 3.3799 73 50 2 0 0 0 0.51565 2 17641 17641;17726 10.074 0 1 133360 40634 12937 25688 25700 46551;46552 46551 0.011666516946661432 SGLEAGFVFV 10 Unmodified _SGLEAGFVFV_ 0 0 0 L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.2697143554688 2 513.26875 1024.52295 0.096602 4.9583E-05 0.10153 5.2111E-05 0.19813 0.00010169 513.2687284500581 72.425 0.61175 75.722 75.469 76.081 3.2971 77 52 2 0 0 0 0.51565 1 17695 17695 10.074 0 1 143600 40635 12937 25688 25700 46553 46553 0.011666516946661432 SGLEAGFVFV 10 Unmodified _SGLEAGFVFV_ 0 0 0 L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense L1ME4b_dup694|chr1:108603019-108604120:+|1.894109810956476|0.0967047724354929|4.29|151.0|57|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2689819335938 2 513.26875 1024.52295 0.28199 0.00014474 -0.18887 -9.694E-05 0.093126 4.7799E-05 513.2685275210669 72.479 0.71982 75.706 75.339 76.059 3.2271 95 61 2 0 0 0 0.51565 1 17769 17769 10.074 0 1 134570 40636 12937 25688 25700 46554 46554 0.011666516946661432 SGLGDYLEL 9 Unmodified _SGLGDYLEL_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-MSMS UPN47_class_I_Rep_1 2 483.7424621582031 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.041849 1 9871 9871 52.268 6.2474 1 1297200 40637 4873 25689 25701 46555 46555 -0.013539314389618085 SGLGDYLEL 9 Unmodified _SGLGDYLEL_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-MSMS UPN47_class_I_Rep_2 3 483.7424621582031 2 483.742565 965.470577 0.064223 3.1067E-05 -0.086121 -4.166E-05 -0.021898 -1.0593E-05 483.742428791502 46.889 1.0416 50.24 49.827 50.869 3.3515 222 71 4 0 0 0 0.041849 1 10017 10017 52.268 6.2474 1 1214200 40638 4873 25689 25701 46556 46556 -0.013539314389618085 SGLGDYLEL 9 Unmodified _SGLGDYLEL_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-MSMS UPN47_class_I_Rep_3 4 483.7424621582031 2 483.742565 965.470577 0.0061026 2.9521E-06 -0.066631 -3.2232E-05 -0.060528 -2.928E-05 483.74245566486627 46.945 1.0336 50.189 49.798 50.831 3.2439 183 66 4 0 0 0 0.11683 2 10129 10049;10129 30.637 4.3684 1 1396700 40639 4873 25689 25701 46557;46558 46558 -0.013539314389618085 SGLIERDKK 9 Unmodified _SGLIERDKK_ 0 0 0 REV__L1M5_dup5563|chr2:71374191-71374645:-|1.9291547425517463|0.1527518121567677|3.66|151.0|4|1|sense REV__L1M5_dup5563|chr2:71374191-71374645:-|1.9291547425517463|0.1527518121567677|3.66|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3038330078125 2 523.303655 1044.59276 0.31837 0.00016661 -0.047443 -2.4827E-05 0.27093 0.00014178 523.303400150913 81.781 0.21021 81.781 81.653 81.863 0 33 20 3 0 0 0 0.48846 1 19315 19315 1.8442 0 1 174960 + 40640 24704 25690 25702 46559 46559 0.07224530363282611 SGLIERDKK 9 Unmodified _SGLIERDKK_ 0 0 0 REV__L1M5_dup5563|chr2:71374191-71374645:-|1.9291547425517463|0.1527518121567677|3.66|151.0|4|1|sense REV__L1M5_dup5563|chr2:71374191-71374645:-|1.9291547425517463|0.1527518121567677|3.66|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.303655 1044.59276 0.075071 3.9285E-05 0.25844 0.00013524 0.33351 0.00017453 523.3034356074727 78.047 0.20013 81.39 81.352 81.553 3.3428 -0.27706 0.00027927 NaN 1.8442 39 23 3 NaN NaN NaN NaN 0 NaN NaN 0 90577 + 40641 24704 25690 25702 0.07224530363282611 SGLIERDKK 9 Unmodified _SGLIERDKK_ 0 0 0 REV__L1M5_dup5563|chr2:71374191-71374645:-|1.9291547425517463|0.1527518121567677|3.66|151.0|4|1|sense REV__L1M5_dup5563|chr2:71374191-71374645:-|1.9291547425517463|0.1527518121567677|3.66|151.0|4|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 523.303655 1044.59276 0.31394 0.00016429 -0.24594 -0.0001287 0.068004 3.5587E-05 523.3033453380043 78.308 0.2048 81.83 81.767 81.971 3.5221 0.16313 -0.00024861 NaN 1.8442 27 22 2 NaN NaN NaN NaN 0 NaN NaN 0 55983 + 40642 24704 25690 25702 0.07224530363282611 SGLIYQQNIL 10 Unmodified _SGLIYQQNIL_ 0 0 0 REV__Tigger17a_dup466|chr3:177142762-177143370:+|1.7047157054249535|0.0145705677009651|6.87|151.0|16|3|sense REV__Tigger17a_dup466|chr3:177142762-177143370:+|1.7047157054249535|0.0145705677009651|6.87|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 574.8189697265625 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 69.82 1 73.342 72.842 73.842 3.5216 0 0 0 0.53105 1 16200 16200 4.5289 0.33936 1 + 40643 32605 25691 25703 46560 46560 0.055816836775193224 SGLLFALKRSF 11 Unmodified _SGLLFALKRSF_ 0 0 0 L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|110|1|anti-sense L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|110|1|anti-sense L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|110|1|anti-sense MSMS UPN46_class_I_Rep_3 1 619.8695678710938 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 89.177 1 89.177 88.677 89.677 0 0 0 0 0.38417 1 21446 21446 1.1933 0 1 40644 14582 25692 25704 46561 46561 0.10894242219501393 SGLLWLLGLFF 11 Unmodified _SGLLWLLGLFF_ 0 0 0 L1MA4A_dup1392|chr4:6809564-6811383:+|1.2710716111629037|0.0386342943510138|5.04|151.0|121|3|anti-sense L1MA4A_dup1392|chr4:6809564-6811383:+|1.2710716111629037|0.0386342943510138|5.04|151.0|121|3|anti-sense L1MA4A_dup1392|chr4:6809564-6811383:+|1.2710716111629037|0.0386342943510138|5.04|151.0|121|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 633.3687744140625 2 633.368267 1264.72198 0.43796 0.00027739 0.82073 0.00051982 1.2587 0.00079721 633.368202612984 89.498 0.3197 93.123 93.084 93.404 3.6255 43 33 2 0 0 0 0.60697 1 21490 21490 3.2813 1.9518 1 240710 40645 9760 25693 25705 46562 46562 0.10020911993342452 SGLPIFTSIL 10 Unmodified _SGLPIFTSIL_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|377|2|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|377|2|anti-sense MSMS UPN48_class_I_Rep_2 6 524.3108520507812 2 524.307875 1046.6012 NaN NaN NaN NaN NaN NaN NaN 53.367 1 56.977 56.477 57.477 3.6098 0 0 0 0.53105 1 11178 11178 13.906 0.86358 1 + 40646 25094 25694 25706 46563 46563 0.07976084279903262 SGLVVPVWRK 10 Unmodified _SGLVVPVWRK_ 0 0 0 REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.8483276367188 2 570.848033 1139.68151 0.47641 0.00027196 0.20337 0.00011609 0.67978 0.00038805 570.848197072154 109.69 0.49725 109.69 109.63 110.13 0 99 40 3 0 0 0 0.54466 2 27034 27034;27081 6.2058 0 1 5481700 + 40647 32221 25695 25707 46564;46565 46564 0.11725990393620123 SGLVVPVWRK 10 Unmodified _SGLVVPVWRK_ 0 0 0 REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.8479614257812 2 570.848033 1139.68151 0.48484 0.00027677 0.25798 0.00014727 0.74282 0.00042404 570.8480359409431 108.68 0.44345 112.32 112.17 112.62 3.6355 147 45 5 0 0 0 0.47413 1 26794 26794 13.906 4.5229 1 156500000 + 40648 32221 25695 25707 46566 46566 0.11725990393620123 SGLVVPVWRK 10 Unmodified _SGLVVPVWRK_ 0 0 0 REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.8479614257812 2 570.848033 1139.68151 0.48497 0.00027685 -0.59982 -0.0003424 -0.11484 -6.5558E-05 570.8477110373583 109.08 0.1606 112.68 112.61 112.77 3.6046 29 9 4 0 0 0 0.56078 1 26886 26886 3.2813 1.2216 1 16003000 + 40649 32221 25695 25707 46567 46567 0.11725990393620123 SGLVVPVWRK 10 Unmodified _SGLVVPVWRK_ 0 0 0 REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.84814453125 2 570.848033 1139.68151 0.39863 0.00022756 0.059219 3.3805E-05 0.45785 0.00026136 570.847929641273 108.7 0.60485 112.33 112.17 112.77 3.6321 236 72 5 0 0 0 0.47413 3 26375 26375;26425;26440 13.906 4.5229 1 96923000 + 40650 32221 25695 25707 46568;46569;46570 46568 0.11725990393620123 SGLVVPVWRK 10 Unmodified _SGLVVPVWRK_ 0 0 0 REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|76|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 570.848033 1139.68151 0.46461 0.00026522 -0.24868 -0.00014196 0.21593 0.00012326 570.8479323518053 108.87 0.30588 112.55 112.51 112.81 3.6751 -0.067311 0.00012184 NaN 3.2813 87 33 3 NaN NaN NaN NaN 0 NaN NaN 0 33967000 + 40651 32221 25695 25707 0.11725990393620123 SGNEWDRER 9 Unmodified _SGNEWDRER_ 0 0 0 REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF MSMS UPN47_class_I_Rep_1 2 574.7560424804688 2 574.757601 1147.50065 NaN NaN NaN NaN NaN NaN NaN 38.46 1 42.125 41.625 42.625 3.6652 0 0 0 0.39518 1 7414 7414 1.8442 0.36234 1 + 40652 17871 25696 25708 46571 46571 -0.06720179721060049 SGNPIKVSF 9 Unmodified _SGNPIKVSF_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MSMS UPN46_class_I_Rep_3 1 474.7613220214844 2 474.761092 947.507631 NaN NaN NaN NaN NaN NaN NaN 53.067 1 53.067 52.567 53.567 0 0 0 0 0.28608 1 11391 11391 11.495 3.5846 1 40653 1337 25697 25709 46572 46572 0.03177784897479796 SGNPIKVSF 9 Unmodified _SGNPIKVSF_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MSMS UPN46_class_I_Rep_3 1 474.76171875 2 474.761092 947.507631 NaN NaN NaN NaN NaN NaN NaN 53.131 1 53.131 52.631 53.631 0 0 0 0 0.23173 1 11410 11410 14.405 5.66 1 40654 1337 25697 25709 46573 46573 0.03177784897479796 SGNPIKVSF 9 Unmodified _SGNPIKVSF_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MULTI-MSMS UPN48_class_I_Rep_1 5 474.7612609863281 2 474.761092 947.507631 0.087734 4.1653E-05 0.53555 0.00025426 0.62328 0.00029591 474.7610571915641 47.674 0.5266 51.195 51.033 51.559 3.5219 51 43 2 0 0 0 0.2924 1 9483 9483 14.405 4.3315 1 98734 40655 1337 25697 25709 46574 46574 0.03177784897479796 SGNPIKVSF 9 Unmodified _SGNPIKVSF_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MULTI-MATCH UPN48_class_I_Rep_3 7 2 474.761092 947.507631 0.134 6.3616E-05 0.14075 6.6823E-05 0.27475 0.00013044 474.7611784869941 47.614 0.45533 51.248 51.016 51.471 3.6339 0.026092 -0.00011531 NaN 14.405 47 38 2 NaN NaN NaN NaN 0 NaN NaN 0 94724 40656 1337 25697 25709 0.03177784897479796 SGNWDWPWLL 10 Unmodified _SGNWDWPWLL_ 0 0 0 ENST00000509330.5_1_6:64346386-64346665:+|nuORF ENST00000509330.5_1_6:64346386-64346665:+|nuORF ENST00000509330.5_1_6:64346386-64346665:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 425.77484130859375 3 425.204862 1272.59276 -0.90096 -0.00038309 0.50438 0.00021447 -0.39658 -0.00016863 425.2050861998151 36.143 0.82561 39.555 39.196 40.022 3.4114 107 60 3 0 0 0 0.84575 1 6783 6783 0.69767 0.69767 1 128170 40657 7172 25698 25710 46575 46575 -0.032634696367040306 SGPGPLHF 8 Unmodified _SGPGPLHF_ 0 0 0 REV__L1MC4_dup2832|chr2:99913196-99914633:+|1.0744816958174983|0.0172801350047207|5.96|150.0|57|1|anti-sense REV__L1MC4_dup2832|chr2:99913196-99914633:+|1.0744816958174983|0.0172801350047207|5.96|150.0|57|1|anti-sense MSMS UPN48_class_I_Rep_1 5 406.2186584472656 2 406.208495 810.402438 NaN NaN NaN NaN NaN NaN NaN 65.321 1 68.775 68.275 69.275 3.4541 0 0 0 0.40581 1 14854 14854 2.8892 0 1 + 40658 26901 25699 25711 46576 46576 -0.010347115082822711 SGPPINHR 8 Unmodified _SGPPINHR_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|209|1|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|209|1|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|209|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 439.23602294921875 2 439.235576 876.456599 -0.29828 -0.00013101 0.89454 0.00039291 0.59626 0.0002619 439.23596795277075 95.588 0.58343 98.998 98.792 99.376 3.4095 111 82 2 0 0 0 0.82752 1 23771 23771 2.5775 0 1 181170 40659 13611 25700 25712 46577 46577 0.013428806432784768 SGPPINHR 8 Unmodified _SGPPINHR_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|209|1|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|209|1|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|209|1|anti-sense MSMS UPN48_class_I_Rep_1 5 439.236083984375 2 439.235576 876.456599 NaN NaN NaN NaN NaN NaN NaN 94.061 1 97.682 97.182 98.182 3.6208 0 0 0 0.40604 1 22625 22625 2.5775 0 1 40660 13611 25700 25712 46578 46578 0.013428806432784768 SGPPLPRGDK 10 Unmodified _SGPPLPRGDK_ 0 0 0 REV__ENSG00000148357|ENST00000683500|HMCN2 REV__ENSG00000148357|ENST00000683500|HMCN2 MSMS UPN48_class_I_Rep_2 6 512.282958984375 2 512.282723 1022.55089 NaN NaN NaN NaN NaN NaN NaN 102.84 1 106.55 106.05 107.05 3.7108 0 0 0 0.53105 1 24351 24351 3.2813 0.54611 1 + 40661 19586 25701 25713 46579 46579 0.0405197467475773 SGPPRKVEVE 10 Unmodified _SGPPRKVEVE_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS UPN47_class_I_Rep_1 2 549.3016357421875 2 549.301113 1096.58767 0.53896 0.00029605 -0.59128 -0.00032479 -0.052329 -2.8744E-05 549.300594675336 101.11 0.081596 104.9 104.84 104.93 3.7942 17 11 2 0 0 0 0.56078 1 24959 24959 3.2813 0 1 97563 40662 3270 25702 25714 46580 46580 0.04324226500648365 SGPPRKVEVE 10 Unmodified _SGPPRKVEVE_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_2 3 549.302734375 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 100.17 1 103.66 103.16 104.16 3.4974 0 0 0 0.53105 1 24507 24507 3.2813 0 1 40663 3270 25702 25714 46581 46581 0.04324226500648365 SGPPRKVEVE 10 Unmodified _SGPPRKVEVE_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS UPN48_class_I_Rep_2 6 549.3007202148438 2 549.301113 1096.58767 0.4894 0.00026883 -0.4805 -0.00026394 0.0088989 4.8882E-06 549.3006622205081 101.05 0.13915 104.79 104.76 104.9 3.7416 25 18 2 0 0 0 0.56078 1 24004 24004 3.2813 0 1 136470 40664 3270 25702 25714 46582 46582 0.04324226500648365 SGPPRKVEVE 10 Unmodified _SGPPRKVEVE_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS UPN48_class_I_Rep_3 7 549.3008422851562 2 549.301113 1096.58767 0.42729 0.00023471 -0.07255 -3.9852E-05 0.35474 0.00019486 549.3009530756933 100.62 0.67523 104.48 104.16 104.84 3.8537 193 97 3 0 0 0 0.52562 2 23817 23817;23844 8.7454 1.6437 1 444670 40665 3270 25702 25714 46583;46584 46583 0.04324226500648365 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MULTI-MSMS UPN48_class_I_Rep_1 5 527.30615234375 2 527.306198 1052.59784 0.30259 0.00015956 -0.002852 -1.5039E-06 0.29974 0.00015806 527.3061691748757 100.08 0.12144 103.69 103.66 103.78 3.6084 17 15 2 0 0 0 0.56078 1 24186 24186 3.2813 0 1 79696 + 40666 18832 25703 25715 46585 46585 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MSMS UPN48_class_I_Rep_1 5 527.3057250976562 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 97.306 1 100.91 100.41 101.41 3.6088 0 0 0 0.53105 1 23471 23471 3.2813 0 1 + 40667 18832 25703 25715 46586 46586 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MSMS UPN48_class_I_Rep_1 5 527.3060302734375 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 97.499 1 101.11 100.61 101.61 3.6088 0 0 0 0.53105 1 23520 23520 3.2813 0 1 + 40668 18832 25703 25715 46587 46587 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MSMS UPN48_class_I_Rep_1 5 527.30615234375 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 99.164 1 102.77 102.27 103.27 3.6065 0 0 0 0.53105 1 23940 23940 5.2969 0 1 + 40669 18832 25703 25715 46588 46588 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MULTI-MSMS UPN48_class_I_Rep_2 6 527.306640625 2 527.306198 1052.59784 0.40486 0.00021349 -0.029155 -1.5373E-05 0.37571 0.00019811 527.3061684966488 97.982 0.2149 101.76 101.65 101.86 3.779 38 28 2 0 0 0 0.56078 1 23262 23262 3.2813 0 1 85758 + 40670 18832 25703 25715 46589 46589 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MSMS UPN48_class_I_Rep_2 6 527.30615234375 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 98.891 1 102.66 102.16 103.16 3.7707 0 0 0 0.53105 1 23492 23492 5.2969 0 1 + 40671 18832 25703 25715 46590 46590 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MSMS UPN48_class_I_Rep_2 6 527.306640625 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 99.28 1 103.04 102.54 103.54 3.7575 0 0 0 0.53105 1 23577 23577 3.2813 0 1 + 40672 18832 25703 25715 46591 46591 0.07364834225882078 SGPPRVLAEK 10 Unmodified _SGPPRVLAEK_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-3|SLC2A4RG MULTI-MATCH UPN48_class_I_Rep_3 7 2 527.306198 1052.59784 0.46122 0.0002432 0.21025 0.00011086 0.67146 0.00035407 527.3063847233625 99.448 0.027092 103.33 103.31 103.34 3.8839 -0.17747 9.372E-05 NaN 3.2813 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 70335 + 40673 18832 25703 25715 0.07364834225882078 SGPPYLRPNP 10 Unmodified _SGPPYLRPNP_ 0 0 0 REV__ENST00000553142.5_1_12:58021700-58025915:-|nuORF REV__ENST00000553142.5_1_12:58021700-58025915:-|nuORF MSMS UPN48_class_I_Rep_2 6 549.30126953125 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 100.35 1 104.09 103.59 104.59 3.7417 0 0 0 0.53105 1 23834 23834 6.7232 0.51738 1 + 40674 19139 25704 25716 46592 46592 0.022122611917893664 SGPRRVGLA 9 Unmodified _SGPRRVGLA_ 0 0 0 REV__ENST00000533608.5_1_11:44117206-44117353:+|nuORF REV__ENST00000533608.5_1_11:44117206-44117353:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 456.7725524902344 2 456.772326 911.530098 0.11548 5.2747E-05 -0.075652 -3.4556E-05 0.039826 1.8191E-05 456.7721817131663 80.949 0.74101 84.437 84.097 84.838 3.4874 138 73 3 0 0 0 0.48414 1 20110 20110 2.3027 0 1 322230 + 40675 22874 25705 25717 46593 46593 0.07079429085740685 SGRDLQEAF 9 Unmodified _SGRDLQEAF_ 0 0 0 ENST00000360864.8_1_20:62566648-62566831:+|nuORF ENST00000360864.8_1_20:62566648-62566831:+|nuORF ENST00000360864.8_1_20:62566648-62566831:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 511.7489013671875 2 511.748713 1021.48287 0.3708 0.00018976 -0.33679 -0.00017235 0.034014 1.7407E-05 511.7485330220838 52.786 0.87702 56.395 56.027 56.904 3.6098 133 56 3 0 0 0 0.40174 1 11081 11081 7.9102 0 1 747710 40676 6323 25706 25718 46594 46594 -0.02700894975907886 SGRKPSKHG 9 Unmodified _SGRKPSKHG_ 0 0 0 L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 477.2682800292969 2 477.267407 952.520262 0.23903 0.00011408 1.4839 0.00070821 1.7229 0.00082229 477.2681145033783 107.8 0.16705 111.47 111.39 111.56 3.6724 12 11 2 0 0 0 0.43153 1 26427 26427 6.2058 0.47393 1 3454000 40677 13251 25707 25719 46595 46595 0.04210241080374999 SGRKPSKHG 9 Unmodified _SGRKPSKHG_ 0 0 0 L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 477.267407 952.520262 0.10445 4.9849E-05 1.9553 0.00093319 2.0597 0.00098304 477.2682780681298 107.79 0.19818 111.42 111.36 111.56 3.6313 -0.0043721 3.1357E-05 NaN 6.2058 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4634400 40678 13251 25707 25719 0.04210241080374999 SGRKPSKHG 9 Unmodified _SGRKPSKHG_ 0 0 0 L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense L1MEf_dup1501|chr2:158636129-158637805:-|1.2433954144619963|0.3753288327128547|1.73|151.0|124|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 477.267407 952.520262 0.21623 0.0001032 1.3658 0.00065184 1.582 0.00075504 477.26786340262083 107.78 0.10475 111.47 111.41 111.51 3.6813 0.036907 -0.00053135 NaN 6.2058 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4486900 40679 13251 25707 25719 0.04210241080374999 SGRLFPLPVLL 11 Unmodified _SGRLFPLPVLL_ 0 0 0 ENST00000557232.1_1_14:23025225-23025366:-|nuORF ENST00000557232.1_1_14:23025225-23025366:-|nuORF ENST00000557232.1_1_14:23025225-23025366:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 404.5886535644531 3 404.588536 1210.74378 -0.44377 -0.00017954 1.2292 0.00049732 0.78543 0.00031778 404.92338313280703 37.561 0.36525 41.226 41.041 41.407 3.6652 38 25 2 0 0 0 0.68024 1 7118 7118 0.50596 0 1 82423 40680 7437 25708 25720 46596 46596 0.14683716741933495 SGRLFPLPVLL 11 Unmodified _SGRLFPLPVLL_ 0 0 0 ENST00000557232.1_1_14:23025225-23025366:-|nuORF ENST00000557232.1_1_14:23025225-23025366:-|nuORF ENST00000557232.1_1_14:23025225-23025366:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 404.588536 1210.74378 0.05233 2.1172E-05 1.0537 0.00042632 1.106 0.00044749 404.92320153678685 41.608 0.070557 41.608 41.577 41.648 0 0.19099 -0.00013184 NaN 0.50596 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 166770 40681 7437 25708 25720 0.14683716741933495 SGRRIRIT 8 Unmodified _SGRRIRIT_ 0 0 0 L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 480.2445068359375 2 479.798875 957.583196 NaN NaN NaN NaN NaN NaN NaN 17.408 1 17.408 16.908 17.908 0 0 0 0 0.40798 1 1369 1369 0 0 1 40682 11245 25709 25721 46597 46597 0.10270806868390991 SGRRIRIT 8 Unmodified _SGRRIRIT_ 0 0 0 L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 480.2168884277344 2 479.798875 957.583196 NaN NaN NaN NaN NaN NaN NaN 19.607 1 19.607 19.107 20.107 0 0 0 0 0.40798 1 1897 1897 0 0 1 40683 11245 25709 25721 46598 46598 0.10270806868390991 SGRRIRIT 8 Unmodified _SGRRIRIT_ 0 0 0 L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense L1MC2_dup2866|chr8:47528334-47529139:+|1.661144876077999|0.0150391311229304|6.79|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 479.79718017578125 2 479.798875 957.583196 NaN NaN NaN NaN NaN NaN NaN 12.091 1 15.466 14.966 15.966 3.3753 0 0 0 0.40798 1 16 16 0 0 1 40684 11245 25709 25721 46599 46599 0.10270806868390991 SGRRVLMI 8 Unmodified _SGRRVLMI_ 0 0 0 Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|45|3|sense Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|45|3|sense Tigger2_dup803|chr4:139695842-139697615:-|2.9603893849858043|0.2931891226363551|3.34|151.0|45|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 465.7773742675781 2 466.278929 930.543305 -0.057041 -2.6597E-05 0.33724 0.00015725 0.28019 0.00013065 466.27923887287506 73.003 0.25899 76.23 76.067 76.326 3.2271 28 22 2 0 0 0 0.72333 1 17961 17961 0.79363 0 1 96401 40685 33327 25710 25722 46600 46600 0.07525543873487095 SGSMIPMVLG 10 Unmodified _SGSMIPMVLG_ 0 0 0 MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|13|1|anti-sense MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|13|1|anti-sense MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|13|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 496.25146484375 2 496.251188 990.487824 0.14153 7.0236E-05 0.12376 6.1414E-05 0.26529 0.00013165 496.2511664531221 24.758 0.42923 28.527 28.394 28.824 3.769 70 50 2 0 0 0 0.55983 1 2891 2891 3.9444 0 1 46929 40686 16453 25711 25723 46601 46601 -0.0078005042913673606 SGSSCYCDCWD 11 Unmodified _SGSSCYCDCWD_ 0 0 0 REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|139|1|anti-sense REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|139|1|anti-sense MSMS UPN46_class_I_Rep_3 1 613.1856079101562 2 613.183374 1224.35219 NaN NaN NaN NaN NaN NaN NaN 21.415 1 21.415 20.915 21.915 0 0 0 0 0.38417 1 2390 2390 0 0 1 + 40687 30511 25712 25724 46602 46602 -0.2510073807295612 SGSSCYCDCWD 11 Unmodified _SGSSCYCDCWD_ 0 0 0 REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|139|1|anti-sense REV__L1PB2_dup1065|chr6:88951525-88954760:+|1.6921143515329606|0.0209512614451049|6.34|151.0|139|1|anti-sense MSMS UPN46_class_I_Rep_3 1 613.182861328125 2 613.183374 1224.35219 NaN NaN NaN NaN NaN NaN NaN 34.536 1 34.536 34.036 35.036 0 0 0 0 0.38417 1 6178 6178 0 0 1 + 40688 30511 25712 25724 46603 46603 -0.2510073807295612 SGSVPFGPLM 10 Unmodified _SGSVPFGPLM_ 0 0 0 REV__ENST00000558243.1_1_15:40330963-40331317:-|nuORF REV__ENST00000558243.1_1_15:40330963-40331317:-|nuORF MSMS UPN48_class_I_Rep_2 6 496.25146484375 2 496.249503 990.484453 NaN NaN NaN NaN NaN NaN NaN 24.789 1 28.425 27.925 28.925 3.6363 0 0 0 0.53105 1 2926 2926 7.2892 0 1 + 40689 23002 25713 25725 46604 46604 -0.011169772114953957 SGTEWLTK 8 Unmodified _SGTEWLTK_ 0 0 0 REV__L1ME2_dup12232|chr20:34484937-34485616:-|2.4886945591984904|0.4448504313637982|2.48|151.0|4|1|sense REV__L1ME2_dup12232|chr20:34484937-34485616:-|2.4886945591984904|0.4448504313637982|2.48|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 461.2373962402344 2 461.23745 920.460347 0.18205 8.3969E-05 -0.30078 -0.00013873 -0.11873 -5.4764E-05 461.23726105675263 109.25 0.27007 112.92 112.8 113.07 3.6715 69 36 2 0 0 0 0.82752 1 25993 25993 4.756 0 1 3395600 + 40690 27825 25714 25726 46605 46605 -0.003064943735353154 SGTKRPTVL 9 Unmodified _SGTKRPTVL_ 0 0 0 REV__L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|70|2|sense REV__L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|70|2|sense MSMS UPN48_class_I_Rep_1 5 479.78729248046875 2 479.787641 957.56073 NaN NaN NaN NaN NaN NaN NaN 43.651 1 47.162 46.662 47.662 3.5103 0 0 0 0.2408 1 8217 8217 13.906 0.86358 1 + 40691 29862 25715 25727 46606 46606 0.0802516268013278 SGTKRPTVL 9 Unmodified _SGTKRPTVL_ 0 0 0 REV__L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|70|2|sense REV__L1PA6_dup2429|chr6:72978684-72984846:-|1.595932469713477|0.0267476506745309|5.9|148.0|70|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.78741455078125 2 479.787641 957.56073 0.16049 7.6999E-05 0.033666 1.6152E-05 0.19415 9.3152E-05 479.7875809637698 43.505 0.55804 47.266 46.907 47.465 3.7617 63 44 2 0 0 0 0.24936 1 8140 8140 17.113 5.4726 1 133000 + 40692 29862 25715 25727 46607 46607 0.0802516268013278 SGWVWVFI 8 Unmodified _SGWVWVFI_ 0 0 0 L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|109|2|anti-sense L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|109|2|anti-sense L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|109|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 497.26318359375 2 497.263271 992.511988 -0.11741 -5.8385E-05 -0.48225 -0.0002398 -0.59966 -0.00029819 497.2630044575126 45.067 1.6671 48.767 48.122 49.789 3.6999 157 106 2 0 0 0 0.72333 1 9313 9313 5.7604 1.4312 1 157600 40693 13405 25716 25728 46608 46608 0.015432941110361753 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 510.759521484375 2 510.759081 1019.50361 0.25673 0.00013113 -0.13036 -6.6583E-05 0.12637 6.4546E-05 510.75895500671334 53.416 0.80208 56.935 56.544 57.346 3.5192 82 58 2 0 0 0 0.36392 2 11168 11168;11216 10.074 10.074 1 147810 + 40694 21941 25717 25729 46609;46610 46609 -0.005363045962326396 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 510.7586669921875 2 510.759081 1019.50361 0.38421 0.00019624 -0.2096 -0.00010706 0.17461 8.9183E-05 510.75885556030653 53.289 0.80495 56.899 56.451 57.256 3.6098 78 51 2 0 0 0 0.36392 2 11136 11136;11181 10.074 10.074 1 171710 + 40695 21941 25717 25729 46611;46612 46611 -0.005363045962326396 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 510.759033203125 2 510.759081 1019.50361 0.42965 0.00021945 -0.22586 -0.00011536 0.20379 0.00010409 510.7589135218833 56.824 0.87347 60.358 59.962 60.835 3.5333 180 78 3 0 0 0 0.23293 1 12161 12161 18.146 18.146 1 889110 + 40696 21941 25717 25729 46613 46613 -0.005363045962326396 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 510.7591552734375 2 510.759081 1019.50361 0.20701 0.00010573 -0.20229 -0.00010332 0.0047193 2.4104E-06 510.7589883825654 47.847 0.54836 51.481 51.273 51.821 3.6339 48 34 2 0 0 0 0.31407 1 9462 9462 13.042 13.042 1 153990 + 40697 21941 25717 25729 46614 46614 -0.005363045962326396 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 510.759081 1019.50361 0.21889 0.0001118 -0.45298 -0.00023137 -0.2341 -0.00011957 510.7588634007446 48.045 0.53716 51.567 51.31 51.847 3.5219 0.061689 -0.00010553 NaN 13.042 47 34 2 NaN NaN NaN NaN 0 NaN NaN 0 175630 + 40698 21941 25717 25729 -0.005363045962326396 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 510.759081 1019.50361 0.32076 0.00016383 -0.23001 -0.00011748 0.09075 4.6351E-05 510.75891007512456 56.844 0.85781 60.338 60.015 60.873 3.4942 0.013791 -9.8083E-05 NaN 18.146 172 74 3 NaN NaN NaN NaN 0 NaN NaN 0 1053700 + 40699 21941 25717 25729 -0.005363045962326396 SGYAPQERL 9 Unmodified _SGYAPQERL_ 0 0 0 REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF REV__ENST00000368298.2_1_1:156106971-156107031:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 510.759081 1019.50361 0.19885 0.00010156 -0.0064225 -3.2804E-06 0.19243 9.8283E-05 510.7590309137988 56.734 0.82953 60.277 59.905 60.735 3.5427 -0.047293 0.00013032 NaN 18.146 190 80 3 NaN NaN NaN NaN 0 NaN NaN 0 1168700 + 40700 21941 25717 25729 -0.005363045962326396 SGYHHSVHYL 10 Unmodified _SGYHHSVHYL_ 0 0 0 L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|57|2|anti-sense L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|57|2|anti-sense L1MA4_dup81|chr1:50843252-50844327:-|1.2089106141767618|0.012943093291948|6.55|151.0|57|2|anti-sense MSMS UPN47_class_I_Rep_1 2 600.2836303710938 2 600.283254 1198.55196 NaN NaN NaN NaN NaN NaN NaN 58.467 1 61.884 61.384 62.384 3.4171 0 0 0 0.53105 1 13503 13503 1.4819 0 1 40701 9734 25718 25730 46615 46615 -0.03937810956313115 SHALAPRPM 9 Unmodified _SHALAPRPM_ 0 0 0 REV__L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|227|1|anti-sense REV__L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|227|1|anti-sense MSMS UPN48_class_I_Rep_2 6 490.26275634765625 2 490.260736 978.50692 NaN NaN NaN NaN NaN NaN NaN 29.749 1 33.381 32.881 33.881 3.6316 0 0 0 0.39518 1 4267 4267 1.8442 0 1 + 40702 29900 25719 25731 46616 46616 0.016806669767788662 SHCHSKGLMS 10 Unmodified _SHCHSKGLMS_ 0 0 0 REV__LTR5B_dup110|chr5:37671897-37672890:+|1.072253706606002|0.0086028464706196|6.96|151.0|22|3|sense REV__LTR5B_dup110|chr5:37671897-37672890:+|1.072253706606002|0.0086028464706196|6.96|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 543.7422485351562 2 543.744593 1085.47463 NaN NaN NaN NaN NaN NaN NaN 36.773 1 40.172 39.672 40.672 3.3988 0 0 0 0.53105 1 6937 6937 1.4819 0.68827 1 + 40703 30978 25720 25732 46617 46617 -0.06468488488530966 SHCNILVTIF 10 Unmodified _SHCNILVTIF_ 0 0 0 REV__Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|32|3|sense REV__Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|32|3|sense MSMS UPN47_class_I_Rep_3 4 573.8048706054688 2 573.802434 1145.59032 NaN NaN NaN NaN NaN NaN NaN 79.594 1 82.889 82.389 83.389 3.295 0 0 0 0.53105 1 19902 19902 2.9952 0 1 + 40704 32355 25721 25733 46618 46618 0.023343586339706235 SHCTEMLPQS 10 Unmodified _SHCTEMLPQS_ 0 0 0 REV__nc|ENSG00000120949|P28908-2|TNFRSF8 REV__nc|ENSG00000120949|P28908-2|TNFRSF8 MSMS UPN48_class_I_Rep_3 7 566.7401733398438 2 566.741716 1131.46888 NaN NaN NaN NaN NaN NaN NaN 24.326 1 28.094 27.594 28.594 3.769 0 0 0 0.53105 1 2798 2798 3.2813 0.28607 1 + 40705 18719 25722 25734 46619 46619 -0.09159631790862477 SHDCCLIL 8 Unmodified _SHDCCLIL_ 0 0 0 L1ME2z_dup2231|chr5:176925063-176926365:+|3.071374608958644|0.0355628319677954|6.43|151.0|88|3|anti-sense L1ME2z_dup2231|chr5:176925063-176926365:+|3.071374608958644|0.0355628319677954|6.43|151.0|88|3|anti-sense L1ME2z_dup2231|chr5:176925063-176926365:+|3.071374608958644|0.0355628319677954|6.43|151.0|88|3|anti-sense MSMS UPN47_class_I_Rep_1 2 452.2058410644531 2 452.206781 902.399009 NaN NaN NaN NaN NaN NaN NaN 23.404 1 27.108 26.608 27.608 3.7042 0 0 0 0.40581 1 2888 2888 2.8892 0 1 40706 12554 25723 25735 46620 46620 -0.05609465668817393 SHDHINYI 8 Unmodified _SHDHINYI_ 0 0 0 L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|77|3|sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|77|3|sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|77|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 499.73748779296875 2 499.738148 997.461744 -0.17313 -8.652E-05 0.1835 9.1704E-05 0.010374 5.1844E-06 499.7382017140788 26.621 1.0185 30.115 29.868 30.886 3.4945 168 93 2 0 0 0 0.82752 1 4046 4046 4.756 0 1 227180 40707 11914 25724 25736 46621 46621 -0.03708860284768889 SHEEKRKL 8 Unmodified _SHEEKRKL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-SECPEP UPN46_class_I_Rep_3 1 513.2872924804688 2 513.788173 1025.56179 0.27969 0.0001437 0.99087 0.0005091 1.2706 0.0006528 513.7887806085372 71.756 0.046516 71.756 71.739 71.786 0 4 2 2 0 0 0 0.72333 1 16558 16558 2.3027 0 1 70762 40708 3071 25725 25737 46622 46622 0.05003377049047231 SHEKTGAGEDV 11 Unmodified _SHEKTGAGEDV_ 0 0 0 L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|105|2|sense L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|105|2|sense L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|105|2|sense MSMS UPN47_class_I_Rep_3 4 565.2594604492188 2 565.259642 1128.50473 NaN NaN NaN NaN NaN NaN NaN 30.851 1 34.162 33.662 34.662 3.3116 0 0 0 0.38417 1 5180 5180 1.1933 0.39971 1 40709 14439 25726 25738 46623 46623 -0.054381350179937726 SHELVCFALL 10 Unmodified _SHELVCFALL_ 0 0 0 REV__MLT1G3_dup911|chr5:65557317-65557790:+|1.7132837954735294|0.1657336572570328|3.37|151.0|4|1|sense REV__MLT1G3_dup911|chr5:65557317-65557790:+|1.7132837954735294|0.1657336572570328|3.37|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.2976684570312 2 566.296985 1130.57942 0.35363 0.00020026 -0.012407 -7.0258E-06 0.34123 0.00019324 566.2968539027702 56.345 0.56011 59.802 59.503 60.063 3.4572 42 28 2 0 0 0 0.51565 1 12885 12885 10.074 0 1 103900 + 40710 31740 25727 25739 46624 46624 0.019349562596744363 SHFFVPIRIQ 10 Unmodified _SHFFVPIRIQ_ 0 0 0 L1MC5a_dup8890|chr9:77896298-77896673:-|1.139463093691607|0.0083316420758504|7.1|151.0|21|2|anti-sense L1MC5a_dup8890|chr9:77896298-77896673:-|1.139463093691607|0.0083316420758504|7.1|151.0|21|2|anti-sense L1MC5a_dup8890|chr9:77896298-77896673:-|1.139463093691607|0.0083316420758504|7.1|151.0|21|2|anti-sense MSMS UPN46_class_I_Rep_3 1 622.3492431640625 2 622.35094 1242.68733 NaN NaN NaN NaN NaN NaN NaN 45.371 1 45.371 44.871 45.871 0 0 0 0 0.53105 1 9220 9220 1.4819 0.41044 1 40711 11769 25728 25740 46625 46625 0.07569088905279386 SHFLPMRLL 9 Unmodified _SHFLPMRLL_ 0 0 0 REV__L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense REV__L1PB1_dup3977|chr5:37128877-37130387:+|1.0255612039892743|0.0572962471636473|4.16|151.0|70|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.5509033203125 2 557.315512 1112.61647 NaN NaN NaN NaN NaN NaN NaN 73.924 1 73.924 73.424 74.424 0 0 0 0 0.39428 1 17145 17145 2.0598 0 1 + 40712 30398 25729 25741 46626 46626 0.06466672596116041 SHFRYCFP 8 Unmodified _SHFRYCFP_ 0 0 0 nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 MSMS UPN48_class_I_Rep_2 6 528.7402954101562 2 528.739637 1055.46472 NaN NaN NaN NaN NaN NaN NaN 119.03 1 122.69 122.19 123.19 3.6652 0 0 0 0.40738 1 28556 28556 0.79363 0 1 40713 1219 25730 25742 46627 46627 -0.060793084315946544 SHFVPFKGY 9 Unmodified _SHFVPFKGY_ 0 0 0 REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|19|2|sense REV__HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 541.2756958007812 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 38.479 1 41.984 41.484 42.484 3.5052 0 0 0 0.38784 1 6673 6673 3.5965 1.2938 1 + 40714 23698 25731 25743 46628 46628 0.002217776514498837 SHGKYINQMK 10 Unmodified _SHGKYINQMK_ 0 0 0 REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|4|1|sense REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 603.3093872070312 2 603.308415 1204.60228 NaN NaN NaN NaN NaN NaN NaN 74.413 1 78.003 77.503 78.503 3.59 0 0 0 0.53105 1 17509 17509 2.4985 0.19575 1 + 40715 24657 25732 25744 46629 46629 0.008159753771451506 SHGLGWLLS 9 Unmodified _SHGLGWLLS_ 0 0 0 L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|50|1|anti-sense L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|50|1|anti-sense L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2854309082031 2 485.261259 968.507966 NaN NaN NaN NaN NaN NaN NaN 33.201 1 36.721 36.221 37.221 3.5201 0 0 0 0.39518 1 5147 5147 1.8442 0 1 40716 12115 25733 25745 46630 46630 0.022452046173384588 SHGRLLPM 8 Unmodified _SHGRLLPM_ 0 0 0 MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|19|2|anti-sense MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|19|2|anti-sense MLT1C_dup14091|chr12:125015121-125015569:+|1.134026752891835|0.0288941373701493|5.29|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_3 7 455.7499694824219 2 455.750005 909.485456 NaN NaN NaN NaN NaN NaN NaN 18.959 1 22.546 22.046 23.046 3.5874 0 0 0 0.40738 1 1345 1345 0.79363 0 1 40717 16296 25734 25746 46631 46631 0.027092819480685648 SHGSDFCCCCC 11 Unmodified _SHGSDFCCCCC_ 0 0 0 REV__L1MB3_dup14829|chr17:36573389-36573865:-|1.7126254348774177|0.0944204955284282|4.18|151.0|19|1|anti-sense REV__L1MB3_dup14829|chr17:36573389-36573865:-|1.7126254348774177|0.0944204955284282|4.18|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.65576171875 2 582.655415 1163.29628 NaN NaN NaN NaN NaN NaN NaN 96.732 1 100.21 99.711 100.71 3.4791 0 0 0 0.38417 1 23758 23758 0 0 1 + 40718 25827 25735 25747 46632 46632 -0.27883985785751975 SHGTLTTIR 9 Unmodified _SHGTLTTIR_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MSMS UPN47_class_I_Rep_1 2 493.2764892578125 2 493.274898 984.535243 NaN NaN NaN NaN NaN NaN NaN 40.626 1 44.298 43.798 44.798 3.6719 0 0 0 0.39598 1 8076 8076 1.6526 0.85899 1 + 40719 17643 25736 25748 46633 46633 0.042356881577120475 SHHCNPAW 8 Unmodified _SHHCNPAW_ 0 0 0 AluSx1_dup35929|chr6:31754138-31754449:-|1.5553818194063278|0.4897550644387184|1.67|151.0|8|2|sense;AluSx1_dup106043|chr19:19801510-19801806:+|1.011674486802825|0.1242280877536629|3.03|151.0|4|1|sense;AluSp_dup9045|chr3:50000413-50000718:-|1.1075596014254407|0.0177959825897736|5.96|151.0|11|3|sense;AluSc8_dup13604|chr11:47371079-47371384:+|1.6299973055057877|0.0245553822374319|6.05|151.0|3|1|sense;AluSc8_dup1176|chr1:155400067-155400343:+|1.0734843140682886|0.0169055546221798|5.99|151.0|14|3|sense AluSx1_dup35929|chr6:31754138-31754449:-|1.5553818194063278|0.4897550644387184|1.67|151.0|8|2|sense AluSx1_dup35929|chr6:31754138-31754449:-|1.5553818194063278|0.4897550644387184|1.67|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 476.197998046875 2 476.198136 950.381719 NaN NaN NaN NaN NaN NaN NaN 67.37 1 70.562 70.062 71.062 3.1914 0 0 0 0.40738 1 16308 16308 0.79363 0 1 40720 208 25737 25749 46634 46634 -0.09545625159614701 SHHESLLLF 9 Unmodified _SHHESLLLF_ 0 0 0 REV__L1MC2_dup11|chr1:8732107-8732802:+|1.55360927545898|0.0188594035121233|6.36|151.0|32|1|anti-sense REV__L1MC2_dup11|chr1:8732107-8732802:+|1.55360927545898|0.0188594035121233|6.36|151.0|32|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.785888671875 2 541.785099 1081.55564 0.42014 0.00022763 0.0047679 2.5832E-06 0.42491 0.00023021 541.7849555084539 53.384 0.83575 56.904 56.527 57.362 3.5192 134 60 3 0 0 0 0.33654 1 11127 11127 11.64 0 1 470360 + 40721 26634 25738 25750 46635 46635 0.01812858817538654 SHHKCGRFCC 10 Unmodified _SHHKCGRFCC_ 0 0 0 REV__THE1B-int_dup1642|chr5:116328802-116330374:-|2.531352555806424|0.0265253624666314|6.58|150.0|5|1|sense REV__THE1B-int_dup1642|chr5:116328802-116330374:-|2.531352555806424|0.0265253624666314|6.58|150.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 589.2443237304688 2 589.244237 1176.47392 NaN NaN NaN NaN NaN NaN NaN 24.851 1 28.62 28.12 29.12 3.769 0 0 0 0.53105 1 2938 2938 0 0 1 + 40722 32246 25739 25751 46636 46636 -0.10725606409209831 SHHTCCCQCF 10 Unmodified _SHHTCCCQCF_ 0 0 0 L1ME1_dup30313|chr21:32740487-32741167:+|1.1296079042649496|0.4417186331875188|1.35|151.0|40|3|anti-sense L1ME1_dup30313|chr21:32740487-32741167:+|1.1296079042649496|0.4417186331875188|1.35|151.0|40|3|anti-sense L1ME1_dup30313|chr21:32740487-32741167:+|1.1296079042649496|0.4417186331875188|1.35|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_2 6 584.6922607421875 2 584.693189 1167.37182 NaN NaN NaN NaN NaN NaN NaN 36.178 1 39.866 39.366 40.366 3.6877 0 0 0 0.53105 1 6054 6054 0.40072 0.050084 1 40723 12384 25740 25752 46637 46637 -0.20516640543178255 SHIFGLIEYY 10 Unmodified _SHIFGLIEYY_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|194|3|anti-sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|194|3|anti-sense MSMS UPN47_class_I_Rep_2 3 621.3137817382812 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 65.364 1 68.619 68.119 69.119 3.2556 0 0 0 0.53105 1 15633 15633 6.2058 1.8765 1 + 40724 24885 25741 25753 46638 46638 0.0021428130326057726 SHIPMEARRT 10 Unmodified _SHIPMEARRT_ 0 0 0 L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|36|3|sense L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|36|3|sense L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|36|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 598.8129272460938 2 599.311489 1196.60842 0.46382 0.00027797 2.7216 0.0016311 3.1854 0.0019091 599.3127156367111 69.06 0.096336 72.515 72.45 72.546 3.4548 9 7 2 0 0 0 0.84575 1 15972 15972 1.3295 0.72803 1 58431 40725 13430 25742 25754 46639 46639 0.017984936086577363 SHIYDHLIF 9 Unmodified _SHIYDHLIF_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|199|3|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|199|3|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|199|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 572.79345703125 2 572.792924 1143.57129 0.52717 0.00030196 -0.67918 -0.00038903 -0.15202 -8.7074E-05 572.792529820199 70.496 0.7744 74.015 73.734 74.508 3.5185 149 80 3 0 0 0 0.25207 1 16388 16388 16.942 1.0951 1 236550 40726 13848 25743 25755 46640 46640 0.005251453345636037 SHKESRTR 8 Unmodified _SHKESRTR_ 0 0 0 L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense L1ME3Cz_dup2151|chr3:32474608-32475381:+|1.745485793312104|0.1229077279748615|3.83|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 500.76739501953125 2 500.767771 999.52099 NaN NaN NaN NaN NaN NaN NaN 21.781 1 25.426 24.926 25.926 3.6459 0 0 0 0.40625 1 2116 2116 2.3027 0 1 40727 12768 25744 25756 46641 46641 0.021210357294194182 SHKIPRRKH 9 Unmodified _SHKIPRRKH_ 0 0 0 L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|36|2|sense L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|36|2|sense L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|36|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 580.3523559570312 2 579.851973 1157.68939 0.37746 0.00021887 -1.0378 -0.00060177 -0.66033 -0.0003829 580.3527079133169 35.763 0.47899 35.763 35.61 36.089 0 48 34 2 0 0 0 0.50088 1 6569 6569 0.52476 0 1 80534 40728 10133 25745 25757 46642 46642 0.11685562433740415 SHKKWKNTD 9 Unmodified _SHKKWKNTD_ 0 0 0 REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|42|3|sense REV__L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|42|3|sense MSMS UPN48_class_I_Rep_3 7 572.2999267578125 2 572.298904 1142.58326 NaN NaN NaN NaN NaN NaN NaN 67.632 1 71.14 70.64 71.64 3.5077 0 0 0 0.39518 1 15454 15454 1.8442 0 1 + 40729 29330 25746 25758 46643 46643 0.017667620777501725 SHKLILSLYFV 11 Unmodified _SHKLILSLYFV_ 0 0 0 REV__L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|164|3|anti-sense REV__L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|164|3|anti-sense MSMS UPN48_class_I_Rep_2 6 440.5946350097656 3 440.595579 1318.76491 NaN NaN NaN NaN NaN NaN NaN 29.377 1 33.008 32.508 33.508 3.6316 0 0 0 0.38417 1 4164 4164 2.2527 0.92309 1 + 40730 24059 25747 25759 46644 46644 0.1182768205078446 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN46_class_I_Rep_3 1 633.369384765625 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 91.813 1 91.813 91.313 92.313 0 0 0 0 0.37931 1 22193 22193 7.1017 1.3699 1 40731 16472 25748 25760 46645 46645 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_2 3 633.3687744140625 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 87.704 1 91.151 90.651 91.651 3.4471 0 0 0 0.38417 1 21803 21803 2.4985 0.84587 1 40732 16472 25748 25760 46646 46646 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_2 3 633.369140625 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 88.857 1 92.309 91.809 92.809 3.4525 0 0 0 0.38417 1 22086 22086 4.1895 0 1 40733 16472 25748 25760 46647 46647 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_3 4 633.3693237304688 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 88.96 1 92.353 91.853 92.853 3.3931 0 0 0 0.37931 1 22313 22313 7.1017 0 1 40734 16472 25748 25760 46648 46648 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_1 5 633.3690795898438 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 88.034 1 91.653 91.153 92.153 3.6187 0 0 0 0.32232 1 21111 21111 10.8 4.5937 1 40735 16472 25748 25760 46649 46649 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_2 6 633.369140625 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 88.383 1 92.111 91.611 92.611 3.7279 0 0 0 0.37931 1 21041 21041 7.1017 0 1 40736 16472 25748 25760 46650 46650 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_2 6 633.3690185546875 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 88.508 1 92.246 91.746 92.746 3.7379 0 0 0 0.37931 1 21070 21070 7.1017 0.89594 1 40737 16472 25748 25760 46651 46651 0.07104767697069292 SHKLLWPVQTG 11 Unmodified _SHKLLWPVQTG_ 0 0 0 MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MLT1J2_dup4641|chr11:77865211-77865666:-|1.1808981152803928|0.0730204622422544|4.02|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_3 7 633.3690185546875 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 87.984 1 91.795 91.295 92.295 3.8104 0 0 0 0.37931 1 20882 20882 7.1017 1.8048 1 40738 16472 25748 25760 46652 46652 0.07104767697069292 SHKMWCCCF 9 Unmodified _SHKMWCCCF_ 0 0 0 REV__L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|95|3|anti-sense REV__L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|95|3|anti-sense MSMS UPN46_class_I_Rep_3 1 572.282958984375 2 572.713393 1143.41223 NaN NaN NaN NaN NaN NaN NaN 14.75 1 14.75 14.25 15.25 0 0 0 0 0.4029 1 711 711 0 0 1 + 40739 26473 25749 25761 46653 46653 -0.15373674152738204 SHKRPRITK 9 Unmodified _SHKRPRITK_ 0 0 0 L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|22|1|sense L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|22|1|sense L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.846435546875 2 561.846356 1121.67816 0.49246 0.00027669 -1.1207 -0.00062966 -0.62824 -0.00035297 561.8456472188118 87.787 0.24552 91.515 91.456 91.701 3.7279 35 27 2 0 0 0 0.5015 1 20900 20900 0.45834 0 1 138990 40740 9278 25750 25762 46654 46654 0.12218740339585565 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_1 5 440.9290771484375 3 440.594684 1318.76222 0.051642 2.2753E-05 0.0087325 3.8475E-06 0.060375 2.6601E-05 440.59463503378464 27.471 1.4612 31.033 30.26 31.721 3.5629 331 155 3 0 0 0 0.44232 9 3685 3334;3421;3458;3494;3531;3571;3612;3646;3685 16.275 8.915 1 269530 40741 5484 25751 25763 46655;46656;46657;46658;46659;46660;46661;46662;46663 46663 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_1 5 440.59466552734375 3 440.594684 1318.76222 0.047823 2.1071E-05 0.060842 2.6807E-05 0.10867 4.7877E-05 440.59469138113315 28.374 0.62906 31.931 31.715 32.344 3.5571 112 63 3 0 0 0 0.50397 3 3840 3759;3804;3840 11.631 9.1966 1 175870 40742 5484 25751 25763 46664;46665;46666 46666 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_1 5 440.59466552734375 3 440.594684 1318.76222 0.045814 2.0185E-05 0.02049 9.0278E-06 0.066304 2.9213E-05 440.59462427421624 28.781 0.4427 32.338 32.142 32.585 3.5571 80 44 3 0 0 0 0.53843 2 3878 3878;3930 7.0371 4.4058 1 164180 40743 5484 25751 25763 46667;46668 46667 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_1 5 440.9294128417969 3 440.594684 1318.76222 0.044198 1.9473E-05 0.10319 4.5466E-05 0.14739 6.4939E-05 440.594709580848 29.112 0.19645 32.662 32.568 32.765 3.5499 37 19 2 0 0 0 0.5614 2 4014 3977;4014 2.8433 1.6285 1 134560 40744 5484 25751 25763 46669;46670 46670 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_1 5 440.5947265625 3 440.594684 1318.76222 0.043024 1.8956E-05 0.0044608 1.9654E-06 0.047485 2.0922E-05 440.59465009119117 29.426 0.29815 32.975 32.765 33.063 3.5499 50 30 2 0 0 0 0.51798 1 4050 4050 9.7643 5.3581 1 141040 40745 5484 25751 25763 46671 46671 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_1 5 440.5946960449219 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 28.13 1 31.688 31.188 32.188 3.5571 0 0 0 0.53105 1 3723 3723 7.9454 0.46833 1 40746 5484 25751 25763 46672 46672 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-SECPEP UPN48_class_I_Rep_1 5 440.7998046875 3 440.594684 1318.76222 0.02933 1.2923E-05 0.13884 6.117E-05 0.16817 7.4093E-05 440.9291758342329 32.476 0.049561 36.002 35.963 36.012 3.5266 6 5 2 0 0 0 0.84575 1 4944 4944 0.56317 0.1965 1 41202 40747 5484 25751 25763 46673 46673 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-SECPEP UPN48_class_I_Rep_1 5 440.7992858886719 3 440.594684 1318.76222 0.038005 1.6745E-05 0.14473 6.3765E-05 0.18273 8.051E-05 440.5945739188508 30.52 0.1559 34.062 33.973 34.129 3.542 23 15 2 0 0 0 0.84575 1 4408 4408 1.5923 0.48253 1 73732 40748 5484 25751 25763 46674 46674 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_2 6 440.5946350097656 3 440.594684 1318.76222 0.14549 6.4102E-05 -0.012997 -5.7263E-06 0.13249 5.8376E-05 440.5946006995295 28.379 0.61382 32.01 31.767 32.381 3.6311 88 66 2 0 0 0 0.48823 3 3893 3860;3893;3959 12.856 6.6125 1 174800 40749 5484 25751 25763 46675;46676;46677 46676 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_2 6 440.5946044921875 3 440.594684 1318.76222 0.14225 6.2673E-05 -0.14142 -6.2308E-05 0.00082984 3.6562E-07 440.5945982800246 28.796 0.44667 32.427 32.31 32.757 3.6311 82 45 2 0 0 0 0.53843 3 4092 4007;4052;4092 7.0371 3.1913 1 138260 40750 5484 25751 25763 46678;46679;46680 46680 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_2 6 440.5945739746094 3 440.594684 1318.76222 0.12851 5.6619E-05 -0.15257 -6.722E-05 -0.024061 -1.0601E-05 440.59456522744256 31.056 0.51307 34.694 34.458 34.972 3.6376 95 57 2 0 0 0 0.56198 1 4655 4655 2.4348 1.22 1 134900 40751 5484 25751 25763 46681 46681 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.5944519042969 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.167 1 30.798 30.298 31.298 3.6311 0 0 0 0.53105 1 3561 3561 1.3296 0.31607 1 40752 5484 25751 25763 46682 46682 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.59478759765625 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.432 1 31.063 30.563 31.563 3.6311 0 0 0 0.53105 1 3633 3633 1.3296 0.31607 1 40753 5484 25751 25763 46683 46683 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.5948181152344 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.567 1 31.198 30.698 31.698 3.6311 0 0 0 0.53105 1 3670 3670 1.3296 0.21989 1 40754 5484 25751 25763 46684 46684 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.5943298339844 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.701 1 31.332 30.832 31.832 3.6311 0 0 0 0.53105 1 3709 3709 2.8433 0.21205 1 40755 5484 25751 25763 46685 46685 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.59466552734375 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.846 1 31.477 30.977 31.977 3.6311 0 0 0 0.53105 1 3750 3750 2.8433 0.59056 1 40756 5484 25751 25763 46686 46686 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.5946350097656 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.971 1 31.602 31.102 32.102 3.6311 0 0 0 0.53105 1 3786 3786 2.8433 0.59056 1 40757 5484 25751 25763 46687 46687 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.5950012207031 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 28.106 1 31.737 31.237 32.237 3.6311 0 0 0 0.53105 1 3824 3824 1.3296 0.31607 1 40758 5484 25751 25763 46688 46688 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.5946350097656 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 29.249 1 32.881 32.381 33.381 3.6316 0 0 0 0.53105 1 4129 4129 2.8433 0.59056 1 40759 5484 25751 25763 46689 46689 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_2 6 440.59442138671875 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 30.756 1 34.391 33.891 34.891 3.6351 0 0 0 0.53105 1 4546 4546 1.3296 0.31607 1 40760 5484 25751 25763 46690 46690 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-SECPEP UPN48_class_I_Rep_2 6 440.7992248535156 3 440.594684 1318.76222 0.12223 5.3854E-05 0.023418 1.0318E-05 0.14565 6.4172E-05 440.59456345874935 32.042 0.1824 35.683 35.581 35.764 3.641 30 18 2 0 0 0 0.84575 1 4908 4908 1.5923 0.48253 1 60609 40761 5484 25751 25763 46691 46691 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_3 7 440.59466552734375 3 440.594684 1318.76222 0.040229 1.7725E-05 0.17464 7.6947E-05 0.21487 9.4672E-05 440.5947328980321 26.866 0.40668 30.622 30.339 30.746 3.7555 95 49 3 0 0 0 0.55335 2 3460 3429;3460 5.0475 2.6127 1 136580 40762 5484 25751 25763 46692;46693 46693 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_3 7 440.5945739746094 3 440.594684 1318.76222 0.041054 1.8088E-05 -0.062231 -2.7419E-05 -0.021178 -9.3307E-06 440.9290689300802 27.389 0.53688 31.145 30.746 31.283 3.7555 121 68 3 0 0 0 0.54445 2 3565 3565;3595 6.2344 3.6031 1 127040 40763 5484 25751 25763 46694;46695 46694 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_3 7 440.9291687011719 3 440.594684 1318.76222 0.042825 1.8868E-05 -0.017972 -7.9182E-06 0.024853 1.095E-05 440.59457339372034 28.633 0.36449 32.375 32.271 32.635 3.7424 63 38 2 0 0 0 0.47933 1 3922 3922 13.519 6.4816 1 133860 40764 5484 25751 25763 46696 46696 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_3 7 440.5947265625 3 440.594684 1318.76222 0.043441 1.914E-05 -0.068825 -3.0324E-05 -0.025385 -1.1184E-05 440.59454825871376 28.96 0.34671 32.702 32.571 32.918 3.7424 72 40 3 0 0 0 0.56354 1 4005 4005 1.3296 0.70282 1 100390 40765 5484 25751 25763 46697 46697 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MSMS UPN48_class_I_Rep_3 7 440.5947265625 3 440.594684 1318.76222 0.043828 1.9311E-05 0.068847 3.0333E-05 0.11267 4.9644E-05 440.5946474147901 29.233 0.22255 32.961 32.821 33.044 3.7286 45 25 3 0 0 0 0.56198 1 4077 4077 2.4348 1.325 1 76026 40766 5484 25751 25763 46698 46698 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.5945129394531 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.049 1 30.805 30.305 31.305 3.7555 0 0 0 0.53105 1 3503 3503 2.8433 0.59056 1 40767 5484 25751 25763 46699 46699 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.5946044921875 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.173 1 30.928 30.428 31.428 3.7555 0 0 0 0.53105 1 3535 3535 1.3296 0.11481 1 40768 5484 25751 25763 46700 46700 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.5946960449219 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.679 1 31.434 30.934 31.934 3.7555 0 0 0 0.53105 1 3662 3662 1.3296 0.31607 1 40769 5484 25751 25763 46701 46701 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.59466552734375 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 27.801 1 31.557 31.057 32.057 3.7555 0 0 0 0.53105 1 3696 3696 2.8433 0.59056 1 40770 5484 25751 25763 46702 46702 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.5948791503906 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 28.082 1 31.825 31.325 32.325 3.7424 0 0 0 0.53105 1 3773 3773 2.8433 0.21205 1 40771 5484 25751 25763 46703 46703 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.5948486328125 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 28.259 1 32.002 31.502 32.502 3.7424 0 0 0 0.53105 1 3821 3821 1.3296 0.21989 1 40772 5484 25751 25763 46704 46704 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MSMS UPN48_class_I_Rep_3 7 440.5948181152344 3 440.594684 1318.76222 NaN NaN NaN NaN NaN NaN NaN 28.495 1 32.237 31.737 32.737 3.7424 0 0 0 0.53105 1 3882 3882 1.3296 0.21989 1 40773 5484 25751 25763 46705 46705 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-SECPEP UPN48_class_I_Rep_3 7 440.5946350097656 3 440.594684 1318.76222 0.043875 1.9331E-05 -0.036698 -1.6169E-05 0.0071762 3.1618E-06 440.59461974482986 29.392 0.30189 33.121 33.025 33.327 3.7286 48 33 2 0 0 0 0.84575 1 4110 4110 2.8433 1.7335 1 130920 40774 5484 25751 25763 46706 46706 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-SECPEP UPN48_class_I_Rep_3 7 440.594482421875 3 440.594684 1318.76222 0.044603 1.9652E-05 0.16596 7.3122E-05 0.21056 9.2774E-05 440.5946371124987 29.942 0.16658 33.671 33.549 33.716 3.7286 30 19 2 0 0 0 0.84575 1 4267 4267 2.8433 1.6285 1 74566 40775 5484 25751 25763 46707 46707 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MATCH UPN48_class_I_Rep_2 6 3 440.594684 1318.76222 0.15529 6.842E-05 0.0068708 3.0273E-06 0.16216 7.1447E-05 440.59461483672703 26.878 0.074867 30.509 30.467 30.542 3.6311 -0.056457 -0.00017887 NaN 5.0475 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 52975 40776 5484 25751 25763 0.1155927143649933 SHKTFRIKRF 10 Unmodified _SHKTFRIKRF_ 0 0 0 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 ENSG00000198918|ENST00000361575|RPL39 MULTI-MATCH UPN48_class_I_Rep_3 7 3 440.594684 1318.76222 0.046071 2.0299E-05 -0.21228 -9.3529E-05 -0.16621 -7.323E-05 440.59449871681187 30.912 0.24473 34.626 34.498 34.743 3.7146 -0.033664 -6.402E-05 NaN 2.4348 45 32 2 NaN NaN NaN NaN 0 NaN NaN 0 70836 40777 5484 25751 25763 0.1155927143649933 SHKWELSIGYT 11 Unmodified _SHKWELSIGYT_ 0 0 0 L1PA15_dup4830|chrX:71548457-71548927:+|2.084439653455564|0.1529953384752128|3.77|151.0|15|3|sense L1PA15_dup4830|chrX:71548457-71548927:+|2.084439653455564|0.1529953384752128|3.77|151.0|15|3|sense L1PA15_dup4830|chrX:71548457-71548927:+|2.084439653455564|0.1529953384752128|3.77|151.0|15|3|sense MSMS UPN48_class_I_Rep_3 7 441.2265625 3 440.890944 1319.651 NaN NaN NaN NaN NaN NaN NaN 104.32 1 108.04 107.54 108.54 3.7192 0 0 0 0.38417 1 24628 24628 4.4062 1.3339 1 40778 13943 25752 25764 46708 46708 0.003961672179002562 SHLDFGGH 8 Unmodified _SHLDFGGH_ 0 0 0 REV__L1PA5_dup11216|chr22:38365607-38366654:+|1.7149340500939012|0.2092477475696933|3.03|151.0|63|3|anti-sense REV__L1PA5_dup11216|chr22:38365607-38366654:+|1.7149340500939012|0.2092477475696933|3.03|151.0|63|3|anti-sense MSMS UPN46_class_I_Rep_3 1 435.1976318359375 2 435.198659 868.382765 NaN NaN NaN NaN NaN NaN NaN 83.67 1 83.67 83.17 84.17 0 0 0 0 0.40738 1 19884 19884 0.79363 0.10326 1 + 40779 29713 25753 25765 46709 46709 -0.05669087519038385 SHLFYYWRF 9 Unmodified _SHLFYYWRF_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|150|3|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|150|3|anti-sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|150|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 440.7994079589844 3 440.217102 1317.62948 0.12251 5.3933E-05 -1.1544 -0.00050818 -1.0319 -0.00045424 440.2165326575703 31.753 0.10546 35.394 35.369 35.475 3.641 15 9 2 0 0 0 0.12516 1 4822 4822 1.0715 0 1 44366 40780 8198 25754 25766 46710 46710 -0.016631730201652317 SHLTGAKVYY 10 Unmodified _SHLTGAKVYY_ 0 0 0 nc|ENSG00000118733|Q96PB7-5|OLFM3;ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3 nc|ENSG00000118733|Q96PB7-5|OLFM3 nc|ENSG00000118733|Q96PB7-5|OLFM3 MSMS UPN47_class_I_Rep_3 4 569.7975463867188 2 569.798206 1137.58186 NaN NaN NaN NaN NaN NaN NaN 53.059 1 56.254 55.754 56.754 3.1948 0 0 0 0.53105 1 11938 11938 22.736 4.6013 1 40781 2262 25755 25767 46711 46711 0.018571279890011283 SHLVFFCII 9 Unmodified _SHLVFFCII_ 0 0 0 REV__L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|195|1|anti-sense REV__L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|195|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 539.1630859375 2 539.791338 1077.56812 0.47355 0.00025562 2.2995 0.0012413 2.7731 0.0014969 539.7922915530006 46.466 0.23853 50.103 49.99 50.229 3.6363 16 13 2 0 0 0 0.12235 1 8985 8985 4.756 0 1 51615 + 40782 25007 25756 25768 46712 46712 0.03244178956219912 SHLVFFCII 9 Unmodified _SHLVFFCII_ 0 0 0 REV__L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|195|1|anti-sense REV__L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|195|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 539.791338 1077.56812 0.3702 0.00019983 2.1171 0.0011428 2.4873 0.0013426 539.7926409880077 46.376 0.15352 49.896 49.815 49.968 3.5192 -0.10354 -9.592E-05 NaN 4.756 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 61942 + 40783 25007 25756 25768 0.03244178956219912 SHLVIFYTH 9 Unmodified _SHLVIFYTH_ 0 0 0 L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|30|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|30|1|anti-sense L1M5_dup10893|chr3:121890660-121891416:-|3.2760456584778743|0.07333656771824|5.48|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_2 6 558.7938842773438 2 558.795466 1115.57638 NaN NaN NaN NaN NaN NaN NaN 27.933 1 31.564 31.064 32.064 3.6311 0 0 0 0.39428 1 3777 3777 2.0598 0 1 40784 9088 25757 25769 46713 46713 0.02321449197165748 SHMFFHSS 8 Unmodified _SHMFFHSS_ 0 0 0 REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|44|3|anti-sense REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|44|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.2088928222656 2 490.20817 978.401786 NaN NaN NaN NaN NaN NaN NaN 76.036 1 79.536 79.036 80.036 3.4996 0 0 0 0.40604 1 18047 18047 2.5775 0 1 + 40785 31173 25758 25770 46714 46714 -0.08827874219639398 SHNELVSWIN 10 Unmodified _SHNELVSWIN_ 0 0 0 REV__L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|113|3|anti-sense REV__L1M1_dup2967|chr5:69246538-69248368:-|1.7159995484061188|0.0615241365487587|4.8|151.0|113|3|anti-sense MSMS UPN47_class_I_Rep_1 2 599.7964477539062 2 599.796195 1197.57784 NaN NaN NaN NaN NaN NaN NaN 63.58 1 66.939 66.439 67.439 3.3595 0 0 0 0.53105 1 15053 15053 1.1933 0.50296 1 + 40786 24070 25759 25771 46715 46715 -0.013049615047066254 SHNLHQIN 8 Unmodified _SHNLHQIN_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP MULTI-MSMS UPN46_class_I_Rep_3 1 481.7431335449219 2 481.743765 961.472977 -0.33405 -0.00016093 0.052515 2.5299E-05 -0.28154 -0.00013563 481.74370038588086 12.595 0.28998 12.595 12.546 12.836 0 30 24 2 0 0 0 0.82752 1 150 150 4.756 0 1 26884 + 40787 20638 25760 25772 46716 46716 -0.009300381906200528 SHNNWYYEF 9 Unmodified _SHNNWYYEF_ 0 0 0 L1PB1_dup6406|chr8:47461610-47462300:-|1.6627683535762536|0.0114585912441642|7.18|151.0|38|2|anti-sense L1PB1_dup6406|chr8:47461610-47462300:-|1.6627683535762536|0.0114585912441642|7.18|151.0|38|2|anti-sense L1PB1_dup6406|chr8:47461610-47462300:-|1.6627683535762536|0.0114585912441642|7.18|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_3 7 630.2625122070312 2 630.259445 1258.50434 NaN NaN NaN NaN NaN NaN NaN 44.914 1 48.551 48.051 49.051 3.6372 0 0 0 0.38639 1 8540 8540 3.9444 0.66309 1 40788 15172 25761 25773 46717 46717 -0.11457509947217659 SHNQAGGSGS 10 Unmodified _SHNQAGGSGS_ 0 0 0 ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 ENSG00000130307|ENST00000252597|USHBP1 MSMS UPN48_class_I_Rep_3 7 451.1933898925781 2 451.191562 900.368572 NaN NaN NaN NaN NaN NaN NaN 62.941 1 66.45 65.95 66.95 3.5091 0 0 0 0.53105 1 14031 14031 1.3295 0.5359 1 40789 2654 25762 25774 46718 46718 -0.08559784737974496 SHNTLMAK 8 Unmodified _SHNTLMAK_ 0 0 0 REV__Tigger1_dup3591|chr4:150968303-150969505:+|1.5814510659709295|0.0166820735628174|6.57|151.0|7|1|sense REV__Tigger1_dup3591|chr4:150968303-150969505:+|1.5814510659709295|0.0166820735628174|6.57|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 451.23095703125 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 100.33 1 103.83 103.33 104.33 3.4974 0 0 0 0.40472 1 24543 24543 4.3292 2.0265 1 + 40790 32425 25763 25775 46719 46719 -0.005470146685070176 SHNTLMAK 8 Unmodified _SHNTLMAK_ 0 0 0 REV__Tigger1_dup3591|chr4:150968303-150969505:+|1.5814510659709295|0.0166820735628174|6.57|151.0|7|1|sense REV__Tigger1_dup3591|chr4:150968303-150969505:+|1.5814510659709295|0.0166820735628174|6.57|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 451.22991943359375 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 99.682 1 103.54 103.04 104.04 3.8537 0 0 0 0.40157 1 23607 23607 7.2892 1.5288 1 + 40791 32425 25763 25775 46720 46720 -0.005470146685070176 SHNWTTELHPE 11 Unmodified _SHNWTTELHPE_ 0 0 0 AluJr_dup34567|chr7:128638761-128639054:-|1.1136530093741477|0.0593366750013598|4.23|149.0|9|3|sense AluJr_dup34567|chr7:128638761-128639054:-|1.1136530093741477|0.0593366750013598|4.23|149.0|9|3|sense AluJr_dup34567|chr7:128638761-128639054:-|1.1136530093741477|0.0593366750013598|4.23|149.0|9|3|sense MSMS UPN48_class_I_Rep_1 5 450.8734130859375 3 450.873953 1349.60003 NaN NaN NaN NaN NaN NaN NaN 98.871 1 102.48 101.98 102.98 3.6065 0 0 0 0.38417 1 23863 23863 1.2148 0 1 40792 145 25764 25776 46721 46721 -0.060787818269545824 SHPDLDAG 8 Unmodified _SHPDLDAG_ 0 0 0 ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF MSMS UPN48_class_I_Rep_1 5 406.1824951171875 2 406.182675 810.350796 NaN NaN NaN NaN NaN NaN NaN 17.175 1 20.702 20.202 21.202 3.5261 0 0 0 0.40746 1 955 955 0.69038 0 1 40793 7358 25765 25777 46722 46722 -0.06196499992859117 SHPDLDAG 8 Unmodified _SHPDLDAG_ 0 0 0 ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF MSMS UPN48_class_I_Rep_2 6 406.18231201171875 2 406.182675 810.350796 NaN NaN NaN NaN NaN NaN NaN 16.864 1 20.517 20.017 21.017 3.6527 0 0 0 0.40746 1 898 898 0.69038 0 1 40794 7358 25765 25777 46723 46723 -0.06196499992859117 SHPHHHHFLG 10 Unmodified _SHPHHHHFLG_ 0 0 0 REV__HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|156|1|anti-sense REV__HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|156|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.2947387695312 2 603.289205 1204.56386 0.46453 0.00028025 0.83881 0.00050604 1.3033 0.00078629 603.2895698922825 54.768 0.65884 58.276 57.899 58.558 3.5082 119 46 3 0 0 0 0.56281 1 11518 11518 1.8442 0.19162 1 579550 + 40795 23869 25766 25778 46724 46724 -0.030241494224810594 SHPRVKLFL 9 Unmodified _SHPRVKLFL_ 0 0 0 REV__ENSG00000136048.14,DRAM1,chr12,+,I6.1,101914233,101920018|46|9.26|1|intron REV__ENSG00000136048.14,DRAM1,chr12,+,I6.1,101914233,101920018|46|9.26|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 548.8351440429688 2 548.834926 1095.6553 0.53999 0.00029637 0.056204 3.0847E-05 0.5962 0.00032721 548.8348631466905 109.02 0.2204 112.62 112.55 112.77 3.6046 26 14 3 0 0 0 0.48846 1 26892 26892 1.8442 1.1539 1 36059000 + 40796 19172 25767 25779 46725 46725 0.11129721222141598 SHPRVKLFL 9 Unmodified _SHPRVKLFL_ 0 0 0 REV__ENSG00000136048.14,DRAM1,chr12,+,I6.1,101914233,101920018|46|9.26|1|intron REV__ENSG00000136048.14,DRAM1,chr12,+,I6.1,101914233,101920018|46|9.26|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 548.8350219726562 2 548.834926 1095.6553 0.48918 0.00026848 0.33879 0.00018594 0.82797 0.00045442 548.8349289106466 108.77 0.54192 112.44 112.29 112.83 3.6746 221 59 4 0 0 0 0.48846 1 25959 25959 1.8442 1.1539 1 118720000 + 40797 19172 25767 25779 46726 46726 0.11129721222141598 SHQDASQPRS 10 Unmodified _SHQDASQPRS_ 0 0 0 REV__nc|ENSG00000164270|Q13639-7|HTR4 REV__nc|ENSG00000164270|Q13639-7|HTR4 MSMS UPN48_class_I_Rep_3 7 556.7575073242188 2 556.757601 1111.50065 NaN NaN NaN NaN NaN NaN NaN 25.649 1 29.418 28.918 29.918 3.769 0 0 0 0.53105 1 3151 3151 1.1933 0.39971 1 + 40798 20046 25768 25780 46727 46727 -0.050641797210573714 SHQPRQHRE 9 Unmodified _SHQPRQHRE_ 0 0 0 AluJr_dup73669|chr17:78780236-78780545:+|2.553836362242928|0.0256811366369174|6.64|151.0|11|3|sense AluJr_dup73669|chr17:78780236-78780545:+|2.553836362242928|0.0256811366369174|6.64|151.0|11|3|sense AluJr_dup73669|chr17:78780236-78780545:+|2.553836362242928|0.0256811366369174|6.64|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 587.7970581054688 2 587.794852 1173.57515 NaN NaN NaN NaN NaN NaN NaN 112.05 1 115.72 115.22 116.22 3.6666 0 0 0 0.39598 1 26676 26676 1.6526 0.17072 1 40799 178 25769 25781 46728 46728 -0.004693721190278666 SHQRKKKKCL 10 Unmodified _SHQRKKKKCL_ 0 0 0 L1MA6_dup3667|chr10:74326632-74327605:-|1.4185993139031865|0.0928253076396737|3.93|151.0|8|1|sense L1MA6_dup3667|chr10:74326632-74327605:-|1.4185993139031865|0.0928253076396737|3.93|151.0|8|1|sense L1MA6_dup3667|chr10:74326632-74327605:-|1.4185993139031865|0.0928253076396737|3.93|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 628.3742065429688 2 628.374423 1254.73429 NaN NaN NaN NaN NaN NaN NaN 36.376 1 36.376 35.876 36.876 0 0 0 0 0.53105 1 6737 6737 0.35063 0 1 40800 9983 25770 25782 46729 46729 0.1171162518478468 SHQTRRIR 8 Unmodified _SHQTRRIR_ 0 0 0 REV__nc|ENSG00000111450|P32856-3|STX2 REV__nc|ENSG00000111450|P32856-3|STX2 MSMS UPN47_class_I_Rep_3 4 527.3046875 2 527.304855 1052.59516 NaN NaN NaN NaN NaN NaN NaN 90.773 1 94.174 93.674 94.674 3.401 0 0 0 0.40746 1 22738 22738 0.69038 0 1 + 40801 18456 25771 25783 46730 46730 0.07096423611596947 SHRDHNHRD 9 Unmodified _SHRDHNHRD_ 0 0 0 nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;ENSG00000165995|ENST00000324631|CACNB2 nc|ENSG00000165995|Q08289-9|CACNB2 nc|ENSG00000165995|Q08289-9|CACNB2 MSMS UPN48_class_I_Rep_3 7 587.2664184570312 2 587.266459 1172.51836 NaN NaN NaN NaN NaN NaN NaN 18.964 1 22.551 22.051 23.051 3.5874 0 0 0 0.4029 1 1347 1347 0 0 1 40802 16739 25772 25784 46731 46731 -0.060994196755245866 SHRKKRCMK 9 Unmodified _SHRKKRCMK_ 0 0 0 REV__LTR40a_dup684|chr5:66091510-66092024:+|1.5433849527240049|0.035618943315015|5.44|150.0|23|1|anti-sense REV__LTR40a_dup684|chr5:66091510-66092024:+|1.5433849527240049|0.035618943315015|5.44|150.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 587.327392578125 2 587.326419 1172.63829 NaN NaN NaN NaN NaN NaN NaN 62.422 1 65.933 65.433 66.433 3.5104 0 0 0 0.4007 1 13872 13872 0.52476 0 1 + 40803 30916 25773 25785 46732 46732 0.05887154073002421 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 634.3779907226562 2 634.377686 1266.74082 0.72562 0.00046031 -1.2567 -0.00079725 -0.53113 -0.00033694 634.3769425512431 107.66 0.12588 107.66 107.62 107.74 0 43 18 3 0 0 0 0.48412 1 26269 26269 8.1555 1.9497 1 24402000 + 40804 18127 25774 25786 46733 46733 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 634.377685546875 2 634.377686 1266.74082 0.56683 0.00035958 -0.92345 -0.00058582 -0.35663 -0.00022624 634.3776539276278 104.17 0.39134 107.93 107.79 108.18 3.7627 97 63 2 0 0 0 0.61292 1 25573 25573 4.897 1.6157 1 56500000 + 40805 18127 25774 25786 46734 46734 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 634.3775634765625 2 634.377686 1266.74082 0.63473 0.00040266 -0.81497 -0.000517 -0.18024 -0.00011434 634.3773722444239 103.64 0.29422 107.17 106.9 107.19 3.5244 144 44 4 0 0 0 0.48412 3 25158 25133;25158;25162 8.1555 2.4985 1 95483000 + 40806 18127 25774 25786 46735;46736;46737 46736 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 634.8785400390625 2 634.377686 1266.74082 0.63451 0.00040252 0.2794 0.00017725 0.91391 0.00057976 634.3783907240943 104.15 0.42486 107.67 107.61 108.04 3.5289 116 68 2 0 0 0 0.61292 1 25345 25345 4.897 1.9018 1 57862000 + 40807 18127 25774 25786 46738 46738 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 634.3776245117188 2 634.377686 1266.74082 0.43225 0.00027421 -0.77401 -0.00049101 -0.34176 -0.00021681 634.3773491289256 103.5 0.31113 107.12 106.84 107.15 3.6209 132 44 4 0 0 0 0.61292 1 24915 24915 4.897 1.9018 1 115830000 + 40808 18127 25774 25786 46739 46739 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 634.3775024414062 2 634.377686 1266.74082 0.43219 0.00027417 -0.4697 -0.00029796 -0.037506 -2.3793E-05 634.3774103241661 105.43 0.76817 109.06 109.02 109.79 3.6277 202 101 3 0 0 0 0.65821 1 25392 25392 2.4985 1.0166 1 2173500 + 40809 18127 25774 25786 46740 46740 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 634.377686 1266.74082 0.56706 0.00035973 -1.2031 -0.00076321 -0.63602 -0.00040348 634.3771645437158 103.71 0.73474 107.47 107.07 107.8 3.7627 0.050915 -0.00012552 NaN 8.1555 260 111 3 NaN NaN NaN NaN 0 NaN NaN 0 133510000 + 40810 18127 25774 25786 0.11811841617145546 SHRKSGEILKI 11 Unmodified _SHRKSGEILKI_ 0 0 0 REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 634.377686 1266.74082 0.43213 0.00027413 -1.1032 -0.00069984 -0.67107 -0.00042571 634.3775464526815 103.76 0.59381 107.38 107.34 107.93 3.6209 -0.042087 1.2129E-06 NaN 8.1555 169 96 3 NaN NaN NaN NaN 0 NaN NaN 0 102230000 + 40811 18127 25774 25786 0.11811841617145546 SHRPLLAY 8 Unmodified _SHRPLLAY_ 0 0 0 L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|165|1|anti-sense L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|165|1|anti-sense L1M1_dup8265|chr14:80509152-80513620:-|2.699532790272027|0.0650305370608533|5.38|151.0|165|1|anti-sense MSMS UPN47_class_I_Rep_2 3 478.7698059082031 2 478.769252 955.52395 NaN NaN NaN NaN NaN NaN NaN 35.772 1 39.183 38.683 39.683 3.4114 0 0 0 0.40604 1 6634 6634 2.5775 0.27475 1 40812 8633 25775 25787 46741 46741 0.0444091085423679 SHRRNWCPY 9 Unmodified _SHRRNWCPY_ 0 0 0 MLT1A0_dup8853|chr6:156150706-156151068:-|1.8266895274917745|0.0171884254318481|6.73|147.0|12|3|sense MLT1A0_dup8853|chr6:156150706-156151068:-|1.8266895274917745|0.0171884254318481|6.73|147.0|12|3|sense MLT1A0_dup8853|chr6:156150706-156151068:-|1.8266895274917745|0.0171884254318481|6.73|147.0|12|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 406.7760925292969 3 406.857691 1217.55124 -0.075928 -3.0892E-05 -0.16287 -6.6267E-05 -0.2388 -9.7159E-05 407.1916323162361 30.716 0.028875 34.258 34.238 34.267 3.542 4 2 2 0 0 0 0.12516 1 4446 4446 1.0715 0 1 13628 40813 16258 25776 25788 46742 46742 -0.048829288770321 SHRRQMKR 8 Unmodified _SHRRQMKR_ 0 0 0 REV__nc|ENSG00000135119|Q96EX2-2|RNFT2 REV__nc|ENSG00000135119|Q96EX2-2|RNFT2 MSMS UPN48_class_I_Rep_2 6 550.2173461914062 2 549.806708 1097.59886 NaN NaN NaN NaN NaN NaN NaN 12.735 1 16.39 15.89 16.89 3.6549 0 0 0 0.40746 1 132 132 0.69038 0.088878 1 + 40814 19125 25777 25789 46743 46743 0.05396770113816274 SHRSEHTGACN 11 Unmodified _SHRSEHTGACN_ 0 0 0 ENSG00000173535|ENST00000356864|TNFRSF10C ENSG00000173535|ENST00000356864|TNFRSF10C ENSG00000173535|ENST00000356864|TNFRSF10C MSMS UPN47_class_I_Rep_1 2 599.7532958984375 2 599.754535 1197.49452 NaN NaN NaN NaN NaN NaN NaN 25.106 1 28.855 28.355 29.355 3.7495 0 0 0 0.38417 1 3391 3391 1.0715 0.46996 1 40815 4632 25778 25790 46744 46744 -0.09633021224180993 SHRTLVQKYVK 11 Unmodified _SHRTLVQKYVK_ 0 0 0 REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|280|3|anti-sense REV__HERV15-int_dup31|chrX:120146891-120152937:+|1.047752110058152|0.0753964886452455|3.8|145.0|280|3|anti-sense MSMS UPN46_class_I_Rep_3 1 453.2662353515625 3 453.601616 1357.78302 NaN NaN NaN NaN NaN NaN NaN 57.527 1 57.527 57.027 58.027 0 0 0 0 0.38417 1 12609 12609 0.50596 0 1 + 40816 23537 25779 25791 46745 46745 0.11843817025510361 SHRVPSLLS 9 Unmodified _SHRVPSLLS_ 0 0 0 REV__ENST00000430859.1_1_7:20257432-20257931:+|nuORF REV__ENST00000430859.1_1_7:20257432-20257931:+|nuORF MSMS UPN48_class_I_Rep_1 5 498.2856750488281 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 20.805 1 24.351 23.851 24.851 3.5454 0 0 0 0.3967 1 1807 1807 1.4819 0 1 + 40817 22290 25780 25792 46746 46746 0.05848278537382612 SHSPINTNLP 10 Unmodified _SHSPINTNLP_ 0 0 0 REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|67|3|sense REV__HERVH-int_dup5175|chr15:101072962-101075942:+|1.2373922326379418|0.143341422010094|3.11|151.0|67|3|sense MSMS UPN46_class_I_Rep_3 1 540.2794799804688 2 540.277638 1078.54072 NaN NaN NaN NaN NaN NaN NaN 81.273 1 81.273 80.773 81.773 0 0 0 0 0.53105 1 19187 19187 8.1555 0.54658 1 + 40818 23683 25781 25793 46747 46747 0.004593669495079666 SHSQPSSLFL 10 Unmodified _SHSQPSSLFL_ 0 0 0 REV__L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|236|1|anti-sense REV__L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|236|1|anti-sense MSMS UPN47_class_I_Rep_3 4 551.7803955078125 2 551.780013 1101.54547 NaN NaN NaN NaN NaN NaN NaN 42.067 1 45.306 44.806 45.806 3.2394 0 0 0 0.53105 1 8595 8595 1.3295 0 1 + 40819 29843 25782 25794 46748 46748 -0.0012374890770843194 SHSTSKFMY 9 Unmodified _SHSTSKFMY_ 0 0 0 REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|19|1|sense REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|19|1|sense MSMS UPN47_class_I_Rep_3 4 544.2463989257812 2 544.247492 1086.48043 NaN NaN NaN NaN NaN NaN NaN 57.032 1 60.204 59.704 60.704 3.1721 0 0 0 0.38784 1 13150 13150 3.5965 0.70727 1 + 40820 29372 25783 25795 46749 46749 -0.05935066705205827 SHTCRKINYF 10 Unmodified _SHTCRKINYF_ 0 0 0 HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|9|1|sense HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|9|1|sense HAL1_dup12246|chr9:5710362-5711239:+|2.207129209109004|0.4898267077552063|2.17|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 634.8118286132812 2 634.813864 1267.61318 NaN NaN NaN NaN NaN NaN NaN 46.69 1 46.69 46.19 47.19 0 0 0 0 0.53105 1 9591 9591 1.3295 0.13619 1 40821 7793 25784 25796 46750 46750 -0.009926222485773906 SHTKPYVRSKG 11 Unmodified _SHTKPYVRSKG_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000416734.1_1_7:121080890-121081274:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS UPN47_class_I_Rep_1 2 630.8480834960938 2 630.346386 1258.67822 -0.066943 -4.2197E-05 -0.65072 -0.00041018 -0.71767 -0.00045238 630.3459605518045 12.864 0.18717 16.314 16.241 16.428 3.45 28 14 3 0 0 0 0.33748 1 167 167 12.175 4.0192 1 67475 40822 981 25785 25797 46751 46751 0.05922695548906631 SHTKPYVRSKG 11 Unmodified _SHTKPYVRSKG_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000416734.1_1_7:121080890-121081274:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS UPN47_class_I_Rep_2 3 630.84716796875 2 630.346386 1258.67822 0.048262 3.0422E-05 -0.75613 -0.00047662 -0.70786 -0.0004462 630.3459356853648 12.89 0.1829 16.278 16.205 16.388 3.388 30 19 2 0 0 0 0.42924 1 169 169 9.544 1.3884 1 66161 40823 981 25785 25797 46752 46752 0.05922695548906631 SHTKPYVRSKG 11 Unmodified _SHTKPYVRSKG_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000416734.1_1_7:121080890-121081274:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS UPN47_class_I_Rep_3 4 630.3451538085938 2 630.346386 1258.67822 -0.4331 -0.000273 -0.36774 -0.0002318 -0.80084 -0.00050481 630.3461745935617 12.923 0.21076 16.296 16.219 16.429 3.3734 35 24 2 0 0 0 0.66277 1 176 176 2.086 0.89267 1 37590 40824 981 25785 25797 46753 46753 0.05922695548906631 SHVEQRPDE 9 Unmodified _SHVEQRPDE_ 0 0 0 REV__ENST00000569146.1_1_16:81726864-81730296:+|nuORF REV__ENST00000569146.1_1_16:81726864-81730296:+|nuORF MSMS UPN47_class_I_Rep_3 4 548.7434692382812 2 548.754527 1095.4945 NaN NaN NaN NaN NaN NaN NaN 30.55 1 33.862 33.362 34.362 3.3116 0 0 0 0.38478 1 5087 5087 4.3292 0 1 + 40825 19718 25786 25798 46754 46754 -0.0494269795258333 SHVLVAYLG 9 Unmodified _SHVLVAYLG_ 0 0 0 REV__ENSG00000055483|ENST00000449938|USP36 REV__ENSG00000055483|ENST00000449938|USP36 MULTI-MSMS UPN47_class_I_Rep_3 4 480.273193359375 2 479.77146 957.528367 -0.42778 -0.00020524 -0.19806 -9.5024E-05 -0.62584 -0.00030026 479.77125600551364 38.087 0.37489 41.329 41.006 41.381 3.2414 42 27 2 0 0 0 0.48643 1 7323 7323 2.0598 0 1 57985 + 40826 17697 25787 25799 46755 46755 0.04790375277138992 SHVRIYLY 8 Unmodified _SHVRIYLY_ 0 0 0 REV__L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|15|3|sense REV__L1MB3_dup3571|chr3:142470917-142471438:-|1.2976941858067836|0.1414905643953662|3.2|151.0|15|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.7889404296875 2 525.790184 1049.56581 0.36864 0.00019383 -0.59325 -0.00031193 -0.22462 -0.0001181 525.7896529212602 46.404 1.1568 50.04 49.649 50.806 3.6366 150 74 3 0 0 0 0.82752 1 9179 9179 12.532 0.89125 1 528890 + 40827 25869 25788 25800 46756 46756 0.04301466542756316 SHVSVRIALSR 11 Unmodified _SHVSVRIALSR_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS UPN46_class_I_Rep_3 1 612.8626098632812 2 612.862203 1223.70985 NaN NaN NaN NaN NaN NaN NaN 51.731 1 51.731 51.231 52.231 0 0 0 0 0.38417 1 11014 11014 1.0715 0.5467 1 + 40828 20270 25789 25801 46757 46757 0.10694688302896793 SHVTAQEIY 9 Unmodified _SHVTAQEIY_ 0 0 0 REV__nc|ENSG00000055163|Q96F07|CYFIP2 REV__nc|ENSG00000055163|Q96F07|CYFIP2 MULTI-MSMS UPN47_class_I_Rep_1 2 524.7611083984375 2 524.258914 1046.50327 -0.02922 -1.5319E-05 0.043422 2.2764E-05 0.014202 7.4453E-06 524.76064347765 43.035 0.61359 46.722 46.424 47.038 3.6875 78 42 2 0 0 0 0.20276 2 8807 8775;8807 20.454 0 1 96024 + 40829 17696 25790 25802 46758;46759 46759 -0.018117243160759244 SHVTAQEIY 9 Unmodified _SHVTAQEIY_ 0 0 0 REV__nc|ENSG00000055163|Q96F07|CYFIP2 REV__nc|ENSG00000055163|Q96F07|CYFIP2 MULTI-MSMS UPN47_class_I_Rep_2 3 524.2577514648438 2 524.258914 1046.50327 -0.24747 -0.00012974 0.96697 0.00050694 0.7195 0.00037721 524.2589379968559 43.307 0.63947 46.665 46.402 47.041 3.358 80 42 3 0 0 0 0.28552 1 8914 8914 14.838 0 1 93911 + 40830 17696 25790 25802 46760 46760 -0.018117243160759244 SHVTAQEIY 9 Unmodified _SHVTAQEIY_ 0 0 0 REV__nc|ENSG00000055163|Q96F07|CYFIP2 REV__nc|ENSG00000055163|Q96F07|CYFIP2 MULTI-MSMS UPN47_class_I_Rep_3 4 524.2589721679688 2 524.258914 1046.50327 0.036957 1.9375E-05 0.11177 5.8597E-05 0.14873 7.7972E-05 524.2587501338238 43.43 0.6374 46.672 46.357 46.995 3.2419 67 40 2 0 0 0 0.28552 1 9055 9055 14.838 0 1 106440 + 40831 17696 25790 25802 46761 46761 -0.018117243160759244 SHVWSAST 8 Unmodified _SHVWSAST_ 0 0 0 REV__ENSG00000151247.12,EIF4E,chr4,-,I5.1,98895564,98901875|31|10.39|1|intron REV__ENSG00000151247.12,EIF4E,chr4,-,I5.1,98895564,98901875|31|10.39|1|intron MSMS UPN48_class_I_Rep_1 5 437.7140197753906 2 437.706317 873.398081 NaN NaN NaN NaN NaN NaN NaN 96.725 1 100.34 99.836 100.84 3.6103 0 0 0 0.40404 1 23315 23315 5.2307 0 1 + 40832 19650 25791 25803 46762 46762 -0.04368220721846683 SHWYLYWG 8 Unmodified _SHWYLYWG_ 0 0 0 ENST00000558506.1_1_14:103801937-103802258:+|nuORF;ENST00000560763.5_2_14:103800597-103802258:+|nuORF ENST00000558506.1_1_14:103801937-103802258:+|nuORF ENST00000558506.1_1_14:103801937-103802258:+|nuORF MSMS UPN47_class_I_Rep_1 2 556.252685546875 2 556.253434 1110.49232 NaN NaN NaN NaN NaN NaN NaN 25.604 1 29.353 28.853 29.853 3.7495 0 0 0 0.40604 1 3537 3537 2.5775 0 1 40833 7444 25792 25804 46763 46763 -0.05851081899709243 SIAIFGGVWA 10 Unmodified _SIAIFGGVWA_ 0 0 0 REV__nc|ENSG00000141424|Q13433-2|SLC39A6 REV__nc|ENSG00000141424|Q13433-2|SLC39A6 MSMS UPN48_class_I_Rep_1 5 510.7785949707031 2 510.779285 1019.54402 NaN NaN NaN NaN NaN NaN NaN 25.882 1 29.448 28.948 29.948 3.5667 0 0 0 0.53105 1 3084 3084 7.9102 0.62092 1 + 40834 19373 25793 25805 46764 46764 0.03502661794186679 SIALNQPAYSV 11 Unmodified _SIALNQPAYSV_ 0 0 0 REV__ENSG00000254415|ENST00000360844|SIGLEC14 REV__ENSG00000254415|ENST00000360844|SIGLEC14 MULTI-SECPEP UPN47_class_I_Rep_2 3 581.2479248046875 2 581.808771 1161.60299 0.51895 0.00030193 -0.36057 -0.00020978 0.15838 9.2149E-05 581.808534947389 57.312 0.25589 60.603 60.531 60.787 3.2912 22 20 2 0 0 0 22.551 1 13236 13236 5.2969 0.39987 1 82536 + 40835 21372 25794 25806 46765 46765 0.028650932978280252 SIARNKLF 8 Unmodified _SIARNKLF_ 0 0 0 HERVK22-int_dup147|chr7:107387678-107389267:+|1.232153008103398|0.0166376856349242|6.21|151.0|49|1|anti-sense HERVK22-int_dup147|chr7:107387678-107389267:+|1.232153008103398|0.0166376856349242|6.21|151.0|49|1|anti-sense HERVK22-int_dup147|chr7:107387678-107389267:+|1.232153008103398|0.0166376856349242|6.21|151.0|49|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.784912109375 2 474.784902 947.55525 0.22492 0.00010679 -0.31083 -0.00014758 -0.085909 -4.0788E-05 474.7846768449574 40.916 1.0477 40.916 40.017 41.065 0 234 117 3 0 0 0 0.82752 1 7808 7808 36.044 0 1 1537700 40836 8281 25795 25807 46766 46766 0.07937483888326824 SIARPLSLL 9 Unmodified _SIARPLSLL_ 0 0 0 ENST00000554302.1_1_15:91498777-91498930:+|nuORF ENST00000554302.1_1_15:91498777-91498930:+|nuORF ENST00000554302.1_1_15:91498777-91498930:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 485.3082580566406 2 485.30821 968.601866 0.16018 7.7737E-05 -0.18756 -9.1026E-05 -0.027383 -1.3289E-05 485.30803157864375 48.497 1.1296 52.215 51.766 52.896 3.7175 182 79 3 0 0 0 0.11355 1 9776 9776 31.268 0.6318 1 1253200 40837 7422 25796 25808 46767 46767 0.11630923719621933 SICEELFELTL 11 Unmodified _SICEELFELTL_ 0 0 0 REV__nc|ENSG00000196712|P21359-2|NF1 REV__nc|ENSG00000196712|P21359-2|NF1 MSMS UPN46_class_I_Rep_3 1 432.8851623535156 3 432.884578 1295.63191 NaN NaN NaN NaN NaN NaN NaN 33.63 1 33.63 33.13 34.13 0 0 0 0 0.38417 1 5905 5905 2.4348 0.69251 1 + 40838 21052 25797 25809 46768 46768 -0.004085501880126685 SICLVLYQYH 10 Unmodified _SICLVLYQYH_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|214|2|anti-sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|214|2|anti-sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|214|2|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8146362304688 2 619.815541 1237.61653 NaN NaN NaN NaN NaN NaN NaN 62.806 1 66.28 65.78 66.78 3.4738 0 0 0 0.53105 1 14068 14068 1.4819 0 1 40839 15427 25798 25810 46769 46769 0.007226278054531576 SIDAIIDDD 9 Unmodified _SIDAIIDDD_ 0 0 0 REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN MSMS UPN46_class_I_Rep_3 1 488.7218933105469 2 488.727112 975.439671 NaN NaN NaN NaN NaN NaN NaN 53.462 1 53.462 52.962 53.962 0 0 0 0 0.11494 1 11504 11504 21.747 0 1 + 40840 17543 25799 25811 46770 46770 -0.049031295438453526 SIDRNYFEE 9 Unmodified _SIDRNYFEE_ 0 0 0 ENSG00000144278|ENST00000392825|GALNT13;ENST00000431076.5_1_2:155098684-155265690:+|nuORF;nc|ENSG00000144278|Q8IUC8-2|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13 ENSG00000144278|ENST00000392825|GALNT13 ENSG00000144278|ENST00000392825|GALNT13 MSMS UPN48_class_I_Rep_2 6 586.7642211914062 2 586.76456 1171.51457 NaN NaN NaN NaN NaN NaN NaN 19.663 1 23.313 22.813 23.813 3.6497 0 0 0 0.39428 1 1543 1543 2.0598 0 1 40841 3347 25800 25812 46771 46771 -0.06432947012626755 SIDSLQLGY 9 Unmodified _SIDSLQLGY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN47_class_I_Rep_1 2 498.2558288574219 2 498.25584 994.497126 0.15804 7.8745E-05 0.17259 8.5994E-05 0.33063 0.00016474 498.2558347041699 64.191 0.52282 67.546 67.282 67.804 3.3557 82 49 3 0 0 0 0.01718 3 15226 15190;15226;15264 65.235 25.278 1 170680 40842 1929 25801 25813 46772;46773;46774 46773 -0.0003424254761057455 SIDSLQLGY 9 Unmodified _SIDSLQLGY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN47_class_I_Rep_2 3 498.25567626953125 2 498.25584 994.497126 0.18817 9.3759E-05 0.10241 5.1028E-05 0.29059 0.00014479 498.2558090435295 64.414 0.57416 67.67 67.387 67.961 3.2556 79 43 2 0 0 0 0.0070866 3 15325 15288;15325;15369 71.922 31.965 1 193440 40843 1929 25801 25813 46775;46776;46777 46776 -0.0003424254761057455 SIDSLQLGY 9 Unmodified _SIDSLQLGY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN47_class_I_Rep_3 4 498.25592041015625 2 498.25584 994.497126 0.21474 0.000107 0.16277 8.11E-05 0.37751 0.0001881 498.25586844006335 64.358 0.70437 67.532 67.259 67.963 3.1741 80 52 2 0 0 0 0.0061372 3 15399 15362;15399;15441 75.761 33.666 1 225430 40844 1929 25801 25813 46778;46779;46780 46779 -0.0003424254761057455 SIDSLQLGY 9 Unmodified _SIDSLQLGY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH UPN46_class_I_Rep_3 1 2 498.25584 994.497126 0.25272 0.00012592 1.5537 0.00077416 1.8065 0.00090008 498.2572078215531 67.149 0.078018 67.149 67.121 67.199 0 -0.2051 0.0013766 NaN 65.235 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 65769 40845 1929 25801 25813 -0.0003424254761057455 SIDSLQLGY 9 Unmodified _SIDSLQLGY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH UPN47_class_I_Rep_2 3 2 498.25584 994.497126 0.19524 9.7281E-05 -0.60687 -0.00030238 -0.41162 -0.00020509 498.25543466806766 64.111 0.04319 67.367 67.335 67.378 3.2556 0.012674 -0.00077643 NaN 65.235 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 25836 40846 1929 25801 25813 -0.0003424254761057455 SIDTLDMHE 9 Unmodified _SIDTLDMHE_ 0 0 0 REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF REV__ENST00000354410.9_2_15:100255687-100255768:+|nuORF MSMS UPN47_class_I_Rep_3 4 530.735595703125 2 530.734414 1059.45428 NaN NaN NaN NaN NaN NaN NaN 21.924 1 25.274 24.774 25.774 3.3496 0 0 0 0.39428 1 2537 2537 2.0598 0 1 + 40847 21858 25802 25814 46781 46781 -0.07307380667339203 SIENQPHSSY 10 Unmodified _SIENQPHSSY_ 0 0 0 REV__ENSG00000203933|ENST00000370540|CXorf66 REV__ENSG00000203933|ENST00000370540|CXorf66 MSMS UPN47_class_I_Rep_2 3 581.2620849609375 2 581.262185 1160.50982 NaN NaN NaN NaN NaN NaN NaN 23.388 1 26.832 26.332 27.332 3.4447 0 0 0 0.53105 1 2937 2937 2.4985 0.65425 1 + 40848 21175 25803 25815 46782 46782 -0.06401831155380933 SIEYQEFVY 9 Unmodified _SIEYQEFVY_ 0 0 0 REV__MER11A_dup827|chr14:52322095-52323188:-|1.1005126705907926|0.1467019474922994|2.91|148.0|19|2|sense REV__MER11A_dup827|chr14:52322095-52323188:-|1.1005126705907926|0.1467019474922994|2.91|148.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.2742919921875 2 589.274229 1176.53391 0.45116 0.00026586 -0.14202 -8.3689E-05 0.30914 0.00018217 589.274040192725 71.145 0.88976 74.357 74.047 74.936 3.2113 136 75 2 0 0 0 0.46869 1 17378 17378 3.9444 0 1 476230 + 40849 31089 25804 25816 46783 46783 -0.047299907216938664 SIFDGRVVAK 10 Unmodified _SIFDGRVVAK_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MULTI-MSMS UPN48_class_I_Rep_1 5 546.2758178710938 2 546.314023 1090.61349 0.46585 0.0002545 -0.49771 -0.00027191 -0.031859 -1.7405E-05 546.3136228628745 39.322 0.85344 42.827 42.51 43.364 3.5048 144 83 2 0 0 0 0.51021 1 6857 6857 10.8 0.72558 1 269230 40850 3279 25805 25817 46784 46784 0.07181120742939129 SIFDGRVVAK 10 Unmodified _SIFDGRVVAK_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MULTI-MSMS UPN48_class_I_Rep_2 6 546.3139038085938 2 546.314023 1090.61349 0.4409 0.00024087 -0.53914 -0.00029454 -0.098238 -5.3669E-05 546.3136776376964 38.968 0.95019 42.698 42.434 43.384 3.7297 147 91 2 0 0 0 0.24411 2 6869 6790;6869 39.213 8.5765 1 283070 40851 3279 25805 25817 46785;46786 46786 0.07181120742939129 SIFDGRVVAK 10 Unmodified _SIFDGRVVAK_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MULTI-MSMS UPN48_class_I_Rep_3 7 546.313720703125 2 546.314023 1090.61349 0.37738 0.00020617 -0.55599 -0.00030374 -0.17861 -9.7577E-05 546.3135781610034 39.087 0.75958 42.743 42.451 43.211 3.6557 140 69 3 0 0 0 0.34145 2 6771 6730;6771 24.882 6.7352 1 289570 40852 3279 25805 25817 46787;46788 46788 0.07181120742939129 SIFHWLASGMS 11 Unmodified _SIFHWLASGMS_ 0 0 0 HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|184|1|anti-sense;HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|154|1|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|184|1|anti-sense HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|184|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 618.2987670898438 2 618.297516 1234.58048 0.51558 0.00031878 3.0229 0.0018691 3.5385 0.0021878 618.2986243097301 51.919 0.35658 55.252 55.092 55.448 3.3332 22 17 2 0 0 0 0.32821 1 11525 11525 13.042 1.5478 1 79007 40853 8047 25806 25818 46789 46789 -0.02742829371436528 SIFIKSTFLAL 11 Unmodified _SIFIKSTFLAL_ 0 0 0 L1MA4_dup1921|chr3:128753187-128753379:+|1.178431107529302|0.0453801049119133|4.7|151.0|11|2|anti-sense L1MA4_dup1921|chr3:128753187-128753379:+|1.178431107529302|0.0453801049119133|4.7|151.0|11|2|anti-sense L1MA4_dup1921|chr3:128753187-128753379:+|1.178431107529302|0.0453801049119133|4.7|151.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 620.3701782226562 2 620.371007 1238.72746 0.51154 0.00031734 -2.7159 -0.0016849 -2.2044 -0.0013675 620.3691338806277 108.71 0.063728 112.24 112.2 112.26 3.5382 7 4 2 0 0 0 0.57992 1 26640 26640 5.7319 2.4505 1 2206400 40854 9657 25807 25819 46790 46790 0.1176459078519656 SIFIKSTFLAL 11 Unmodified _SIFIKSTFLAL_ 0 0 0 L1MA4_dup1921|chr3:128753187-128753379:+|1.178431107529302|0.0453801049119133|4.7|151.0|11|2|anti-sense L1MA4_dup1921|chr3:128753187-128753379:+|1.178431107529302|0.0453801049119133|4.7|151.0|11|2|anti-sense L1MA4_dup1921|chr3:128753187-128753379:+|1.178431107529302|0.0453801049119133|4.7|151.0|11|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 620.371007 1238.72746 0.54821 0.00034009 -3.9994 -0.0024811 -3.4512 -0.002141 620.8704920965708 108.64 0.039337 112.28 112.26 112.3 3.6355 0.017017 -0.0009302 NaN 5.7319 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2245700 40855 9657 25807 25819 0.1176459078519656 SIFLKNRVF 9 Unmodified _SIFLKNRVF_ 0 0 0 L1PREC2_dup5566|chr11:33261216-33262031:-|6.45588300968408|0.0960968567154628|6.07|151.0|42|2|anti-sense L1PREC2_dup5566|chr11:33261216-33262031:-|6.45588300968408|0.0960968567154628|6.07|151.0|42|2|anti-sense L1PREC2_dup5566|chr11:33261216-33262031:-|6.45588300968408|0.0960968567154628|6.07|151.0|42|2|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3350219726562 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 42.606 1 42.606 42.106 43.106 0 0 0 0 0.39518 1 8445 8445 1.8442 0.36234 1 40856 15466 25808 25820 46791 46791 0.09854301502264207 SIFNLPVLS 9 Unmodified _SIFNLPVLS_ 0 0 0 REV__L1PB4_dup3382|chr8:27360967-27361188:-|1.009616650369987|0.0029229396335312|8.43|150.0|7|3|sense REV__L1PB4_dup3382|chr8:27360967-27361188:-|1.009616650369987|0.0029229396335312|8.43|150.0|7|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.28704833984375 2 495.286943 988.559333 0.26614 0.00013181 -0.20361 -0.00010084 0.062532 3.0971E-05 495.28678618344367 62.068 1.2937 65.328 64.885 66.179 3.2594 148 85 2 0 0 0 0.43982 1 14816 14816 5.7319 0 1 974740 + 40857 30587 25809 25821 46792 46792 0.0645952859136969 SIFRKFILILL 11 Unmodified _SIFRKFILILL_ 0 0 0 REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 454.9670715332031 3 454.967236 1361.87988 0.045286 2.0604E-05 0.62062 0.00028236 0.66591 0.00030297 454.96740129694297 41.045 0.53601 44.551 44.334 44.87 3.506 86 46 3 0 0 0 0.68502 1 7483 7483 0.073264 0 1 229680 + 40858 31008 25810 25822 46793 46793 0.21341411252615217 SIFRKFILILL 11 Unmodified _SIFRKFILILL_ 0 0 0 REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 454.9672546386719 3 454.967236 1361.87988 0.089839 4.0874E-05 0.78198 0.00035578 0.87182 0.00039665 454.96748413932556 42.084 0.27999 45.726 45.633 45.913 3.6415 53 29 3 0 0 0 0.68478 1 7706 7706 0.094841 0 1 159490 + 40859 31008 25810 25822 46794 46794 0.21341411252615217 SIFRKFILILL 11 Unmodified _SIFRKFILILL_ 0 0 0 REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 454.967236 1361.87988 0.16613 7.5585E-05 0.84518 0.00038453 1.0113 0.00046011 454.9675754509439 45.69 0.04789 45.69 45.665 45.713 0 -0.017845 4.2367E-05 NaN 0.094841 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 188570 + 40860 31008 25810 25822 0.21341411252615217 SIFRKFILILL 11 Unmodified _SIFRKFILILL_ 0 0 0 REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense REV__LTR78_dup314|chr1:205990052-205990777:+|1.1556692680981144|0.0501663894344046|4.53|147.0|29|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 454.967236 1361.87988 0.089839 4.0874E-05 0.78198 0.00035578 0.87182 0.00039665 454.96748413932556 42.084 0.27999 45.726 45.633 45.913 3.6415 0.017845 -4.3887E-05 NaN 0.094841 53 29 3 NaN NaN NaN NaN 0 NaN NaN 0 159490 + 40861 31008 25810 25822 0.21341411252615217 SIFRKKKKIPL 11 Unmodified _SIFRKKKKIPL_ 0 0 0 L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 453.3057556152344 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 118.56 1 118.56 118.06 119.06 0 0 0 0 0.38417 1 29432 29432 0.094841 0.011491 1 40862 13237 25811 25823 46795 46795 0.23275331858417303 SIFRKKKKIPL 11 Unmodified _SIFRKKKKIPL_ 0 0 0 L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|14|1|sense MSMS UPN48_class_I_Rep_3 7 453.3060302734375 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 114.68 1 118.33 117.83 118.83 3.6511 0 0 0 0.38417 1 27275 27275 0.094841 0.094841 1 40863 13237 25811 25823 46796 46796 0.23275331858417303 SIFSSWAHQL 10 Unmodified _SIFSSWAHQL_ 0 0 0 REV__L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|39|3|anti-sense REV__L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|39|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 587.794921875 2 588.29583 1174.57711 0.58641 0.00034498 -0.90164 -0.00053043 -0.31523 -0.00018545 588.2960538131517 57.263 0.13748 60.777 60.722 60.86 3.5142 14 11 2 0 0 0 0.84575 1 12376 12376 3.2813 0 1 149690 + 40864 24331 25812 25824 46797 46797 -0.0031975615377177746 SIFSYIFWP 9 Unmodified _SIFSYIFWP_ 0 0 0 L1PB1_dup10019|chr12:42427320-42428774:+|1.7573184993336832|0.156312935490971|3.49|151.0|80|3|anti-sense;L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|88|1|anti-sense L1PB1_dup10019|chr12:42427320-42428774:+|1.7573184993336832|0.156312935490971|3.49|151.0|80|3|anti-sense L1PB1_dup10019|chr12:42427320-42428774:+|1.7573184993336832|0.156312935490971|3.49|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 580.2957153320312 2 580.294768 1158.57498 NaN NaN NaN NaN NaN NaN NaN 81.649 1 85.033 84.533 85.533 3.3839 0 0 0 0.39326 1 20339 20339 2.3027 0.24298 1 40865 14118 25813 25825 46798 46798 0.0020381510842071293 SIGDIQVLNGY 11 Unmodified _SIGDIQVLNGY_ 0 0 0 ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5 ENST00000476417.5_1_10:7615057-7659255:-|nuORF ENST00000476417.5_1_10:7615057-7659255:-|nuORF MSMS UPN48_class_I_Rep_3 7 589.8067016601562 2 589.806228 1177.5979 NaN NaN NaN NaN NaN NaN NaN 36.716 1 40.379 39.879 40.879 3.663 0 0 0 0.38417 1 6106 6106 1.1933 0.39971 1 40866 2415 25814 25826 46799 46799 0.016207894352419316 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.889404296875 2 626.389199 1250.76385 0.55628 0.00034845 -0.38403 -0.00024055 0.17225 0.0001079 626.3898430429466 104.07 0.10466 107.83 107.79 107.89 3.7627 25 16 2 0 0 0 0.65271 1 25580 25580 2.9952 0 1 26044000 + 40867 24289 25815 25827 46800 46800 0.14849467681915485 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.8900146484375 2 626.389199 1250.76385 0.63452 0.00039746 -1.4781 -0.00092588 -0.84359 -0.00052842 626.3884508712663 103.74 0.42326 107.27 107.19 107.61 3.5289 102 66 2 0 0 0 0.65271 1 25222 25222 2.9952 0.26005 1 75588000 + 40868 24289 25815 25827 46801 46801 0.14849467681915485 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.8900146484375 2 626.389199 1250.76385 0.6346 0.0003975 -0.56152 -0.00035173 0.073073 4.5772E-05 626.8898603033304 104.13 0.077347 107.66 107.64 107.71 3.5289 18 11 2 0 0 0 0.65271 1 25296 25296 2.9952 0 1 27748000 + 40869 24289 25815 25827 46802 46802 0.14849467681915485 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.8888549804688 2 626.389199 1250.76385 0.63455 0.00039748 -1.9691 -0.0012334 -1.3345 -0.00083593 626.388276270105 104.74 0.23328 108.28 108.15 108.38 3.5327 66 35 2 0 0 0 0.65271 2 25410 25410;25452 2.9952 0.26005 1 37695000 + 40870 24289 25815 25827 46803;46804 46803 0.14849467681915485 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.888916015625 2 626.389199 1250.76385 0.42783 0.00026799 -1.8596 -0.0011648 -1.4317 -0.00089682 626.3883974310388 103.5 0.31724 107.12 106.84 107.16 3.6209 85 45 2 0 0 0 0.65271 1 24958 24958 2.9952 0.26005 1 51252000 + 40871 24289 25815 25827 46805 46805 0.14849467681915485 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3888549804688 2 626.389199 1250.76385 0.49471 0.00030988 -2.4835 -0.0015556 -1.9888 -0.0012457 626.387662226168 105.44 0.19744 109.13 109.05 109.25 3.6901 45 27 2 0 0 0 0.65271 2 24946 24946;24950 2.9952 0.26005 1 572720 + 40872 24289 25815 25827 46806;46807 46806 0.14849467681915485 SIGLLLVVKFY 11 Unmodified _SIGLLLVVKFY_ 0 0 0 REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense REV__L1M3_dup1836|chr5:32427395-32428137:+|1.2136913583727371|0.024103482989586|5.65|150.0|47|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 626.8887329101562 2 626.389199 1250.76385 0.49471 0.00030988 -2.4835 -0.0015556 -1.9888 -0.0012457 626.387662226168 105.44 0.19744 109.13 109.05 109.25 3.6901 45 27 2 0 0 0 22.551 1 24950 24950 2.9952 0.26005 1 572720 + 40873 24289 25815 25827 46808 46808 0.14849467681915485 SIGVERIFY 9 Unmodified _SIGVERIFY_ 0 0 0 nc|ENSG00000112855|P49590-2|HARS2;ENSG00000112855|ENST00000230771|HARS2 nc|ENSG00000112855|P49590-2|HARS2 nc|ENSG00000112855|P49590-2|HARS2 MULTI-MSMS UPN47_class_I_Rep_2 3 542.7970581054688 2 542.295299 1082.57605 0.47829 0.00025938 0.35966 0.00019504 0.83795 0.00045442 542.2955930937424 54.771 0.45107 58.089 57.851 58.302 3.3187 26 21 2 0 0 0 0.46434 1 12442 12442 4.3292 0 1 65261 40874 2027 25816 25828 46809 46809 0.038060294773458736 SIGVYNKK 8 Unmodified _SIGVYNKK_ 0 0 0 REV__ENSG00000183150|ENST00000651487|GPR19 REV__ENSG00000183150|ENST00000651487|GPR19 MULTI-MSMS UPN47_class_I_Rep_3 4 454.7633972167969 2 454.763635 907.512717 -0.40409 -0.00018376 0.37446 0.00017029 -0.029629 -1.3474E-05 454.7636972901015 45.085 1.1672 48.329 48.05 49.217 3.2441 112 75 2 0 0 0 0.82752 1 9459 9459 11.64 0.81637 1 143870 + 40875 20778 25817 25829 46810 46810 0.055260887600866226 SIHAEPYTL 9 Unmodified _SIHAEPYTL_ 0 0 0 REV__ENST00000467138.1_1_9:133577015-133577135:+|nuORF REV__ENST00000467138.1_1_9:133577015-133577135:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 515.7631225585938 2 515.763832 1029.51311 0.32355 0.00016688 -0.24355 -0.00012562 0.080001 4.1261E-05 515.7636041611266 35.162 1.045 38.836 38.506 39.551 3.6735 238 104 3 0 0 0 0.42249 1 5674 5674 6.7232 0 1 713950 + 40876 22479 25818 25830 46811 46811 -0.00046536310719602625 SIHKHLAV 8 Unmodified _SIHKHLAV_ 0 0 0 ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1 ENSG00000075275|ENST00000674500|CELSR1 ENSG00000075275|ENST00000674500|CELSR1 MSMS UPN46_class_I_Rep_3 1 452.7637939453125 2 452.771794 903.529036 NaN NaN NaN NaN NaN NaN NaN 36.034 1 36.034 35.534 36.534 0 0 0 0 0.40643 1 6632 6632 2.0598 0 1 40877 1143 25819 25831 46812 46812 0.0734121471683693 SIHKLQWLIQ 10 Unmodified _SIHKLQWLIQ_ 0 0 0 L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|128|3|sense L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|128|3|sense L1PA7_dup8209|chrX:81265209-81271382:-|1.5554078544264482|0.0631944530386941|4.62|151.0|128|3|sense MSMS UPN48_class_I_Rep_1 5 633.3873901367188 2 633.371872 1264.72919 NaN NaN NaN NaN NaN NaN NaN 85.948 1 89.557 89.057 90.057 3.6092 0 0 0 0.53105 1 20578 20578 2.9952 0.49676 1 40878 14902 25820 25832 46813 46813 0.10741644593804267 SIHLMGIW 8 Unmodified _SIHLMGIW_ 0 0 0 nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1 nc|ENSG00000176623|Q96DB5-3|RMDN1 nc|ENSG00000176623|Q96DB5-3|RMDN1 MSMS UPN47_class_I_Rep_3 4 478.7549133300781 2 478.754756 955.494958 NaN NaN NaN NaN NaN NaN NaN 26.952 1 30.294 29.794 30.794 3.3422 0 0 0 0.40738 1 4021 4021 0.79363 0 1 40879 4766 25821 25833 46814 46814 0.01543050233590293 SIHLTKDYY 9 Unmodified _SIHLTKDYY_ 0 0 0 L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|135|3|sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|135|3|sense L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|135|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.2901611328125 2 570.290214 1138.56587 0.43152 0.00024609 -1.1041 -0.00062966 -0.67258 -0.00038357 570.7904698565386 72.589 0.20619 75.886 75.757 75.964 3.2971 25 16 2 0 0 0 0.43153 1 17791 17791 6.2058 0.97511 1 50479 40880 15125 25822 25834 46815 46815 0.0021342175209611014 SIHLVTQNL 9 Unmodified _SIHLVTQNL_ 0 0 0 Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|1|1|sense Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|1|1|sense Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 512.7936401367188 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 43.043 1 46.554 46.054 47.054 3.5103 0 0 0 0.37476 1 8034 8034 6.7232 1.9672 1 40881 33121 25823 25835 46816 46816 0.0604514533456495 SIHLVTQNL 9 Unmodified _SIHLVTQNL_ 0 0 0 Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|1|1|sense Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|1|1|sense Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 512.7931518554688 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 43.224 1 46.862 46.362 47.362 3.6385 0 0 0 0.37476 1 8017 8017 6.7232 1.4925 1 40882 33121 25823 25835 46817 46817 0.0604514533456495 SIHTWILTF 9 Unmodified _SIHTWILTF_ 0 0 0 REV__MER11A_dup143|chr3:18449321-18450428:-|2.1958219189378445|0.0560532491826211|5.29|151.0|26|3|sense REV__MER11A_dup143|chr3:18449321-18450428:-|2.1958219189378445|0.0560532491826211|5.29|151.0|26|3|sense MSMS UPN48_class_I_Rep_3 7 559.30517578125 2 559.305667 1116.59678 NaN NaN NaN NaN NaN NaN NaN 57.265 1 60.801 60.301 61.301 3.5358 0 0 0 0.38639 1 12302 12302 3.9444 0.3479 1 + 40883 31083 25824 25836 46818 46818 0.04314619856972968 SIIDAHLGGF 10 Unmodified _SIIDAHLGGF_ 0 0 0 L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|185|1|anti-sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|185|1|anti-sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|185|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 515.2734375 2 515.271824 1028.5291 0.30107 0.00015514 1.0701 0.00055139 1.3712 0.00070653 515.2726553447973 43.582 0.24393 43.582 43.536 43.78 0 41 27 2 0 0 0 0.40227 1 8726 8726 19.257 1.122 1 211660 40884 14713 25825 25837 46819 46819 0.015971699261854155 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS UPN46_class_I_Rep_3 1 500.3136901855469 2 500.313492 998.612431 0.29378 0.00014698 -0.011582 -5.7944E-06 0.2822 0.00014119 500.3134310267107 80.257 0.49149 80.257 79.822 80.314 0 81 45 3 0 0 0 0.048662 2 18856 18856;18895 49.554 3.8547 1 693980 40885 4579 25826 25838 46820;46821 46820 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS UPN47_class_I_Rep_1 2 500.3135681152344 2 500.313492 998.612431 0.16928 8.4694E-05 0.1487 7.4396E-05 0.31798 0.00015909 500.3134882113105 72.316 0.98106 75.696 75.155 76.136 3.3799 135 76 3 0 0 0 0.088679 2 17715 17637;17715 36.506 3.7205 1 223700 40886 4579 25826 25838 46822;46823 46823 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS UPN47_class_I_Rep_1 2 500.3138427734375 2 500.313492 998.612431 0.17368 8.6892E-05 0.71778 0.00035911 0.89145 0.00044601 500.3138867512127 73.097 0.44638 76.483 76.142 76.588 3.3861 41 27 2 0 0 0 0.15547 1 17883 17883 24.991 3.454 1 680690 40887 4579 25826 25838 46824 46824 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS UPN47_class_I_Rep_2 3 500.3135986328125 2 500.313492 998.612431 0.20747 0.0001038 0.15834 7.9221E-05 0.36581 0.00018302 500.31350759859214 72.819 1.064 76.116 75.437 76.501 3.2971 146 91 2 0 0 0 0.066364 3 17809 17784;17809;17849 41.956 3.78 1 497440 40888 4579 25826 25838 46825;46826;46827 46826 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS UPN47_class_I_Rep_3 4 500.31329345703125 2 500.313492 998.612431 0.24173 0.00012094 0.081728 4.089E-05 0.32346 0.00016183 500.31346077067286 72.73 1.3763 75.957 75.462 76.838 3.2271 159 118 3 0 0 0 0.053261 4 17895 17895;17934;17969;18063 47.594 9.4188 1 174740 40889 4579 25826 25838 46828;46829;46830;46831 46828 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 500.313492 998.612431 0.28339 0.00014179 1.5013 0.00075114 1.7847 0.00089292 500.31441843174974 72.707 0.22864 76.271 76.167 76.396 3.5645 -0.23983 0.00068496 NaN 24.991 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 43152 40890 4579 25826 25838 0.11306906374034043 SIILNEEKL 9 Unmodified _SIILNEEKL_ 0 0 0 L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense;L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|20|1|sense;L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|77|2|sense;L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|59|3|sense;L1MA2_dup5978|chr12:111908607-111910183:+|2.6216401936681724|0.1985912042095485|3.72|151.0|38|3|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense MSMS UPN47_class_I_Rep_3 4 529.8074951171875 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 69.234 1 72.438 71.938 72.938 3.2044 0 0 0 0.21832 1 16870 16870 15.248 3.0078 1 40891 8487 25827 25839 46832 46832 0.07542878928961727 SIILQDPVLF 10 Unmodified _SIILQDPVLF_ 0 0 0 ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 MSMS UPN47_class_I_Rep_1 2 572.833251953125 2 572.834257 1143.65396 NaN NaN NaN NaN NaN NaN NaN 102.58 1 106.37 105.87 106.87 3.7888 0 0 0 0.53105 1 25245 25245 1.4819 0.15237 1 40892 713 25828 25840 46833 46833 0.0878804234268955 SIILSTLFHLC 11 Unmodified _SIILSTLFHLC_ 0 0 0 L1ME1_dup12871|chr7:6117025-6118112:-|1.0267941734194983|0.0209999039927232|5.61|151.0|40|1|anti-sense L1ME1_dup12871|chr7:6117025-6118112:-|1.0267941734194983|0.0209999039927232|5.61|151.0|40|1|anti-sense L1ME1_dup12871|chr7:6117025-6118112:-|1.0267941734194983|0.0209999039927232|5.61|151.0|40|1|anti-sense MSMS UPN46_class_I_Rep_3 1 416.2280578613281 3 416.233653 1245.67913 NaN NaN NaN NaN NaN NaN NaN 32.033 1 32.033 31.533 32.533 0 0 0 0 0.38417 1 5429 5429 1.3296 0.11481 1 40893 12206 25829 25841 46834 46834 0.06611773873669335 SIINRTAR 8 Unmodified _SIINRTAR_ 0 0 0 L1MB7_dup12259|chrX:72377169-72378134:-|1.1644613920390687|0.0109009064159973|6.74|150.0|30|3|sense L1MB7_dup12259|chrX:72377169-72378134:-|1.1644613920390687|0.0109009064159973|6.74|150.0|30|3|sense L1MB7_dup12259|chrX:72377169-72378134:-|1.1644613920390687|0.0109009064159973|6.74|150.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 465.7772521972656 2 465.777608 929.540663 0.19308 8.9932E-05 -0.21731 -0.00010122 -0.024229 -1.1285E-05 465.77741853204094 85.491 0.6516 89.197 88.901 89.552 3.7058 193 77 3 0 0 0 0.82752 1 20412 20412 1.8442 0 1 515110 40894 10688 25830 25842 46835 46835 0.07307411740168845 SIITEKLAEV 10 Unmodified _SIITEKLAEV_ 0 0 0 ENSG00000163918|ENST00000296273|RFC4 ENSG00000163918|ENST00000296273|RFC4 ENSG00000163918|ENST00000296273|RFC4 MSMS UPN48_class_I_Rep_2 6 551.82080078125 2 551.821347 1101.62814 NaN NaN NaN NaN NaN NaN NaN 107.83 1 111.51 111.01 112.01 3.6783 0 0 0 0.53105 1 25518 25518 8.7454 0 1 40895 4057 25831 25843 46836 46836 0.08139148100417515 SIITHKKWK 9 Unmodified _SIITHKKWK_ 0 0 0 REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|56|3|sense REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|56|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.84765625 2 570.848033 1139.68151 0.48509 0.00027691 -0.42232 -0.00024108 0.06277 3.5832E-05 571.349406705927 110.4 0.14716 113.99 113.88 114.03 3.5836 23 20 2 0 0 0 0.48846 1 27219 27219 1.8442 0 1 81335 + 40896 28447 25832 25844 46837 46837 0.11725990393597385 SIITHKKWK 9 Unmodified _SIITHKKWK_ 0 0 0 REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|56|3|sense REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|56|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 570.848033 1139.68151 0.50506 0.00028831 -0.71898 -0.00041043 -0.21392 -0.00012212 570.847225113742 110.32 0.026535 113.85 113.84 113.87 3.529 -0.067103 -0.00030712 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 47424 + 40897 28447 25832 25844 0.11725990393597385 SIITTTTIF 9 Unmodified _SIITTTTIF_ 0 0 0 REV__L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|11|1|sense REV__L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 498.7861022949219 2 498.784233 995.553913 NaN NaN NaN NaN NaN NaN NaN 68.778 1 72.143 71.643 72.643 3.3646 0 0 0 0.39518 1 16626 16626 1.8442 0 1 + 40898 30544 25833 25845 46838 46838 0.05595805008908883 SIKEKNNIL 9 Unmodified _SIKEKNNIL_ 0 0 0 L1ME1_dup14406|chr7:151500998-151501702:+|1.6365776683300923|0.0532433456360058|4.94|151.0|7|2|sense L1ME1_dup14406|chr7:151500998-151501702:+|1.6365776683300923|0.0532433456360058|4.94|151.0|7|2|sense L1ME1_dup14406|chr7:151500998-151501702:+|1.6365776683300923|0.0532433456360058|4.94|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.3148803710938 2 529.813856 1057.61316 -0.19872 -0.00010528 0.29141 0.00015439 0.09269 4.9108E-05 529.8141295842927 33.418 0.35758 36.693 36.458 36.816 3.2748 38 28 2 0 0 0 0.47493 1 5947 5947 3.2813 0 1 50455 40899 12222 25834 25846 46839 46839 0.0866570102307378 SIKHLEKRR 9 Unmodified _SIKHLEKRR_ 0 0 0 L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 583.8590698242188 2 583.859464 1165.70437 NaN NaN NaN NaN NaN NaN NaN 93.67 1 93.67 93.17 94.17 0 0 0 0 0.4007 1 22708 22708 0.52476 0 1 40900 12686 25835 25847 46840 46840 0.1281500951106409 SIKHLEKRR 9 Unmodified _SIKHLEKRR_ 0 0 0 L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 583.8592529296875 2 583.859464 1165.70437 NaN NaN NaN NaN NaN NaN NaN 89.755 1 93.212 92.712 93.712 3.4571 0 0 0 0.4007 1 22293 22293 0.52476 0 1 40901 12686 25835 25847 46841 46841 0.1281500951106409 SIKHLEKRR 9 Unmodified _SIKHLEKRR_ 0 0 0 L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 583.3692016601562 2 583.859464 1165.70437 NaN NaN NaN NaN NaN NaN NaN 89.826 1 93.224 92.724 93.724 3.3976 0 0 0 0.4007 1 22523 22523 0.52476 0 1 40902 12686 25835 25847 46842 46842 0.1281500951106409 SIKHLEKRR 9 Unmodified _SIKHLEKRR_ 0 0 0 L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 583.859130859375 2 583.859464 1165.70437 0.41268 0.00024095 -0.9482 -0.00055362 -0.53552 -0.00031267 583.8586670017747 89.514 0.45852 93.14 92.916 93.375 3.6255 65 48 2 0 0 0 0.50088 1 21456 21456 0.52476 0 1 166110 40903 12686 25835 25847 46843 46843 0.1281500951106409 SIKHLEKRR 9 Unmodified _SIKHLEKRR_ 0 0 0 L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 583.8593139648438 2 583.859464 1165.70437 NaN NaN NaN NaN NaN NaN NaN 89.769 1 93.598 93.098 94.098 3.8293 0 0 0 0.4007 1 21319 21319 0.52476 0 1 40904 12686 25835 25847 46844 46844 0.1281500951106409 SIKPHYSPTK 10 Unmodified _SIKPHYSPTK_ 0 0 0 REV__L1P2_dup30|chr1:75755827-75757741:+|3.65579755440152|0.2478934351253517|3.88|151.0|9|1|sense REV__L1P2_dup30|chr1:75755827-75757741:+|3.65579755440152|0.2478934351253517|3.88|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.8062133789062 2 579.319306 1156.62406 0.42899 0.00024852 -0.41795 -0.00024212 0.011043 6.3974E-06 579.319156835125 40.343 0.71416 43.848 43.593 44.307 3.5048 97 64 2 0 0 0 0.4965 1 7229 7229 12.241 0 1 126440 + 40905 28854 25836 25848 46845 46845 0.05201103397348561 SIKPHYSPTK 10 Unmodified _SIKPHYSPTK_ 0 0 0 REV__L1P2_dup30|chr1:75755827-75757741:+|3.65579755440152|0.2478934351253517|3.88|151.0|9|1|sense REV__L1P2_dup30|chr1:75755827-75757741:+|3.65579755440152|0.2478934351253517|3.88|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.8067016601562 2 579.319306 1156.62406 0.4275 0.00024766 -0.4746 -0.00027495 -0.047105 -2.7289E-05 579.3190658131027 40.033 0.79583 43.774 43.409 44.205 3.7413 141 83 2 0 0 0 0.4965 1 7250 7250 12.241 0 1 230800 + 40906 28854 25836 25848 46846 46846 0.05201103397348561 SIKPHYSPTK 10 Unmodified _SIKPHYSPTK_ 0 0 0 REV__L1P2_dup30|chr1:75755827-75757741:+|3.65579755440152|0.2478934351253517|3.88|151.0|9|1|sense REV__L1P2_dup30|chr1:75755827-75757741:+|3.65579755440152|0.2478934351253517|3.88|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.806640625 2 579.319306 1156.62406 0.39728 0.00023015 -0.40728 -0.00023595 -0.010002 -5.7946E-06 579.3190699518311 40.211 0.70823 43.862 43.399 44.107 3.6509 118 68 2 0 0 0 0.43106 1 7059 7059 17.113 0 1 147070 + 40907 28854 25836 25848 46847 46847 0.05201103397348561 SIKQYKIVF 9 Unmodified _SIKQYKIVF_ 0 0 0 REV__Charlie1a_dup121|chr1:43759963-43760473:+|1.1446474181394155|0.0102480282512061|6.8|150.0|22|1|anti-sense REV__Charlie1a_dup121|chr1:43759963-43760473:+|1.1446474181394155|0.0102480282512061|6.8|150.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 563.3182983398438 2 563.336967 1124.65938 NaN NaN NaN NaN NaN NaN NaN 56.27 1 59.571 59.071 60.071 3.3009 0 0 0 0.38478 1 12868 12868 4.3292 0.38484 1 + 40908 17298 25837 25849 46848 46848 0.10203765925166408 SIKRHTIKW 9 Unmodified _SIKRHTIKW_ 0 0 0 REV__L1MDa_dup4480|chr10:1063099-1064583:+|1.354483007262144|0.06082465567059|4.48|151.0|42|3|sense REV__L1MDa_dup4480|chr10:1063099-1064583:+|1.354483007262144|0.06082465567059|4.48|151.0|42|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 584.3479614257812 2 584.851107 1167.68766 0.49919 0.00029195 -2.5563 -0.0014951 -2.0571 -0.0012031 584.8494754019591 109.08 0.16858 112.68 112.61 112.77 3.6046 14 10 2 0 0 0 0.12099 1 26872 26872 6.7232 0 1 3699800 + 40909 27525 25838 25850 46849 46849 0.11052508625107293 SIKRKRERRQ 10 Unmodified _SIKRKRERRQ_ 0 0 0 REV__ENSG00000145945|ENST00000648326|FAM50B REV__ENSG00000145945|ENST00000648326|FAM50B MSMS UPN48_class_I_Rep_1 5 452.9480285644531 3 452.948009 1355.8222 NaN NaN NaN NaN NaN NaN NaN 102.56 1 106.17 105.67 106.67 3.6164 0 0 0 0.53105 1 24724 24724 0.15932 0 1 + 40910 19526 25839 25851 46850 46850 0.15851962099736738 SILANPLFR 9 Unmodified _SILANPLFR_ 0 0 0 REV__ENSG00000174348|ENST00000312553|PODN REV__ENSG00000174348|ENST00000312553|PODN MULTI-MSMS UPN48_class_I_Rep_1 5 515.8057250976562 2 515.805834 1029.59712 0.31065 0.00016023 0.044075 2.2734E-05 0.35472 0.00018297 515.8058391983161 67.771 0.98067 71.222 70.743 71.723 3.4517 174 75 3 0 0 0 0.14216 2 15603 15603;15641 26.268 0 1 757160 + 40911 20519 25840 25852 46851;46852 46851 0.08350039576839663 SILANPLFR 9 Unmodified _SILANPLFR_ 0 0 0 REV__ENSG00000174348|ENST00000312553|PODN REV__ENSG00000174348|ENST00000312553|PODN MULTI-MSMS UPN48_class_I_Rep_3 7 515.8057861328125 2 515.805834 1029.59712 0.39595 0.00020423 -0.086797 -4.4771E-05 0.30915 0.00015946 515.8057471399972 67.509 1.0874 71.017 70.487 71.574 3.5077 207 96 3 0 0 0 0.21527 1 15492 15492 19.257 0 1 1138000 + 40912 20519 25840 25852 46853 46853 0.08350039576839663 SILDSSTFHG 10 Unmodified _SILDSSTFHG_ 0 0 0 REV__ENSG00000134107|ENST00000256495|BHLHE40 REV__ENSG00000134107|ENST00000256495|BHLHE40 MULTI-MSMS UPN46_class_I_Rep_3 1 532.2564697265625 2 532.256371 1062.49819 0.19508 0.00010383 -0.058966 -3.1385E-05 0.13611 7.2448E-05 532.2562295621807 35.336 0.57492 35.336 35.1 35.675 0 64 41 2 0 0 0 0.41718 1 6395 6395 18.146 1.0335 1 134880 + 40913 19083 25841 25853 46854 46854 -0.030560281787074928 SILEELAMV 9 Oxidation (M) _SILEELAM(Oxidation (M))V_ SILEELAM(1)V SILEELAM(110)V 0 0 1 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;ENST00000494001.5_1_11:64503317-64504482:-|nuORF;ENST00000465852.1_1_11:64502995-64504542:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 510.767822265625 2 510.767726 1019.5209 0.30014 0.0001533 -0.6026 -0.00030779 -0.30246 -0.00015449 510.7673124945062 83.339 0.47336 86.689 86.357 86.83 3.35 99 55 2 0 0 0 0.0092715 2 20884 20851;20884 108 51.82 1 202040 40914 1053 25842 25854 46855;46856 46856 26 0.011918548945573093 SILEELAMV 9 Oxidation (M) _SILEELAM(Oxidation (M))V_ SILEELAM(1)V SILEELAM(82)V 0 0 1 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;ENST00000494001.5_1_11:64503317-64504482:-|nuORF;ENST00000465852.1_1_11:64502995-64504542:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 510.27398681640625 2 510.767726 1019.5209 0.30205 0.00015428 -1.4906 -0.00076133 -1.1885 -0.00060705 510.76712973658783 84.047 0.24885 87.397 87.228 87.477 3.35 43 29 2 0 0 0 5.6956E-09 1 21075 21075 81.613 31.68 1 121670 40915 1053 25842 25854 46857 46857 26 0.011918548945573093 SILEELAMV 9 Oxidation (M) _SILEELAM(Oxidation (M))V_ 0 0 1 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;ENST00000494001.5_1_11:64503317-64504482:-|nuORF;ENST00000465852.1_1_11:64502995-64504542:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 510.767726 1019.5209 0.28948 0.00014786 -0.25025 -0.00012782 0.039239 2.0042E-05 510.76748279118925 82.871 0.042404 86.41 86.377 86.419 3.5386 -0.13944 0.00034258 NaN 108 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 26239 40916 1053 25842 25854 26 0.011918548945573093 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS UPN47_class_I_Rep_1 2 533.79833984375 2 533.798206 1065.58186 0.19597 0.00010461 0.01441 7.6922E-06 0.21038 0.0001123 533.7980958168885 49.13 0.82432 52.789 52.372 53.196 3.6592 119 58 3 0 0 0 0.095207 2 10705 10659;10705 34.932 9.9411 1 187430 40917 1700 25843 25855 46858;46859 46859 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS UPN47_class_I_Rep_2 3 533.798095703125 2 533.798206 1065.58186 0.30151 0.00016094 -0.006197 -3.308E-06 0.29531 0.00015764 533.7980816179348 49.46 0.94459 52.807 52.39 53.335 3.3465 94 60 2 0 0 0 0.11355 1 10778 10778 31.268 6.2774 1 195470 40918 1700 25843 25855 46860 46860 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS UPN47_class_I_Rep_3 4 533.7980346679688 2 533.798206 1065.58186 0.42798 0.00022845 -0.27699 -0.00014786 0.15098 8.0595E-05 533.7979486294842 49.594 0.9015 52.821 52.401 53.303 3.2262 90 53 2 0 0 0 0.10568 2 10880 10880;10924 32.786 3.7041 1 164210 40919 1700 25843 25855 46861;46862 46861 0.05169127988983746 SILELKNSL 9 Unmodified _SILELKNSL_ 0 0 0 L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|19|2|sense L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|19|2|sense L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|19|2|sense MSMS UPN47_class_I_Rep_2 3 508.8027038574219 2 508.802957 1015.59136 NaN NaN NaN NaN NaN NaN NaN 56.999 1 60.299 59.799 60.799 3.3009 0 0 0 0.18866 1 13091 13091 17.113 0 1 40920 8813 25844 25856 46863 46863 0.08418896274520193 SILHLGRVNS 10 Unmodified _SILHLGRVNS_ 0 0 0 REV__LOR1-int_dup423|chr5:61442423-61443949:-|1.8422249516454732|0.0148475247035814|6.96|151.0|72|1|anti-sense REV__LOR1-int_dup423|chr5:61442423-61443949:-|1.8422249516454732|0.0148475247035814|6.96|151.0|72|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.835205078125 2 548.317097 1094.61964 0.48829 0.00026774 2.3706 0.0012998 2.8589 0.0015676 548.3177803464217 108.72 0.12745 112.4 112.33 112.45 3.6746 14 8 2 0 0 0 0.43106 1 25819 25819 17.113 7.039 1 15545000 + 40921 30770 25845 25857 46864 46864 0.07611638974481139 SILIAPTRRA 10 Unmodified _SILIAPTRRA_ 0 0 0 REV__ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|2|intron REV__ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|2|intron MULTI-MSMS UPN48_class_I_Rep_3 7 549.3432006835938 2 549.343115 1096.67168 0.42677 0.00023444 0.026403 1.4504E-05 0.45318 0.00024895 549.342945840023 107.83 0.21353 111.51 111.44 111.66 3.6813 42 21 4 0 0 0 0.43106 1 25456 25456 17.113 1.2657 1 39372000 + 40922 21080 25846 25858 46865 46865 0.12720802388230368 SILILWLY 8 Unmodified _SILILWLY_ 0 0 0 REV__L1ME4b_dup15679|chr13:19974111-19974478:-|1.2996992197713826|0.0034198131978591|8.57|151.0|26|3|anti-sense REV__L1ME4b_dup15679|chr13:19974111-19974478:-|1.2996992197713826|0.0034198131978591|8.57|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_2 3 510.80889892578125 2 510.810054 1019.60555 NaN NaN NaN NaN NaN NaN NaN 42.706 1 46.067 45.567 46.567 3.3611 0 0 0 0.40581 1 8736 8736 2.8892 0 1 + 40923 28261 25847 25859 46866 46866 0.09653593493453627 SILIYDHD 8 Unmodified _SILIYDHD_ 0 0 0 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 MSMS UPN47_class_I_Rep_3 4 488.2429504394531 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 115.64 1 119.1 118.6 119.6 3.462 0 0 0 0.40746 1 28442 28442 0.69038 0 1 40924 5621 25848 25860 46867 46867 -0.017345117190984638 SILLLGIYPEE 11 Unmodified _SILLLGIYPEE_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|43|3|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|43|3|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 623.849365234375 2 623.850104 1245.68566 0.5121 0.00031947 -1.4049 -0.00087646 -0.89282 -0.00055698 624.3508289454647 107.8 0.23927 111.34 111.25 111.49 3.5382 36 28 2 0 0 0 0.57992 1 26333 26333 5.7319 0 1 7296100 40925 13866 25849 25861 46868 46868 0.07263990306000778 SILPNLLIVFH 11 Unmodified _SILPNLLIVFH_ 0 0 0 REV__L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|58|1|anti-sense REV__L1MD_dup4718|chr9:96880037-96881450:-|1.850093601753136|0.3144819955913765|2.56|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_3 7 633.3848876953125 2 633.384448 1264.75434 NaN NaN NaN NaN NaN NaN NaN 56.946 1 60.488 59.988 60.988 3.5427 0 0 0 0.38417 1 12205 12205 0.30703 0 1 + 40926 27272 25850 25862 46869 46869 0.13255699396381715 SILSHNEQPS 10 Unmodified _SILSHNEQPS_ 0 0 0 REV__MLT1E1_dup498|chr8:12540784-12541353:-|1.9808664253148145|0.210045985802503|3.24|151.0|15|3|sense REV__MLT1E1_dup498|chr8:12540784-12541353:-|1.9808664253148145|0.210045985802503|3.24|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 556.2718505859375 2 556.272552 1110.53055 NaN NaN NaN NaN NaN NaN NaN 31.168 1 34.637 34.137 35.137 3.4691 0 0 0 0.53105 1 5242 5242 2.9952 0.69251 1 + 40927 31691 25851 25863 46870 46870 -0.020292407757096953 SILVFSVDTL 10 Unmodified _SILVFSVDTL_ 0 0 0 HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|78|3|anti-sense HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|78|3|anti-sense HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.3101806640625 2 547.310615 1092.60668 0.34747 0.00019017 0.27977 0.00015312 0.62725 0.0003433 547.3106447766158 57.703 0.37645 60.871 60.715 61.092 3.1681 68 33 3 0 0 0 0.43106 1 13396 13396 17.113 0 1 234870 40928 7838 25852 25864 46871 46871 0.06407763071729278 SILVFSVDTL 10 Unmodified _SILVFSVDTL_ 0 0 0 HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|78|3|anti-sense HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|78|3|anti-sense HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|78|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 547.310615 1092.60668 0.49557 0.00027123 0.78752 0.00043102 1.2831 0.00070225 547.3108519880786 57.897 0.10336 61.188 61.097 61.2 3.2912 0.15863 0.0004955 NaN 17.113 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 115230 40929 7838 25852 25864 0.06407763071729278 SILYSVPLYSV 11 Unmodified _SILYSVPLYSV_ 0 0 0 L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense MSMS UPN48_class_I_Rep_2 6 620.8458862304688 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.228 1 84.884 84.384 85.384 3.6567 0 0 0 0.077509 1 19277 19277 24.991 0 1 40930 14178 25853 25865 46872 46872 0.06484007651579304 SILYSVPLYSV 11 Unmodified _SILYSVPLYSV_ 0 0 0 L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense MSMS UPN48_class_I_Rep_2 6 620.84521484375 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.353 1 85.01 84.51 85.51 3.6567 0 0 0 0.2482 1 19309 19309 15.248 0 1 40931 14178 25853 25865 46873 46873 0.06484007651579304 SILYSVPLYSV 11 Unmodified _SILYSVPLYSV_ 0 0 0 L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense L1PA17_dup411|chr2:63234978-63237994:+|1.293760658508568|0.0549666759675042|4.56|149.0|170|3|anti-sense MSMS UPN48_class_I_Rep_3 7 620.8465576171875 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.411 1 85.096 84.596 85.596 3.685 0 0 0 0.3116 1 19271 19271 11.495 0 1 40932 14178 25853 25865 46874 46874 0.06484007651579304 SIMDNGVVHI 10 Unmodified _SIMDNGVVHI_ 0 0 0 REV__L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|40|1|anti-sense REV__L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_2 3 542.7774047851562 2 542.776416 1083.53828 NaN NaN NaN NaN NaN NaN NaN 111.55 1 115.07 114.57 115.57 3.5226 0 0 0 0.53105 1 27155 27155 3.5965 0.31518 1 + 40933 25297 25854 25866 46875 46875 -0.00014804779789301392 SIMPLRLQ 8 Unmodified _SIMPLRLQ_ 0 0 0 REV__LTR8_dup2997|chr17:39376863-39377493:+|1.344877453190437|0.0081384620613751|7.37|151.0|23|3|sense REV__LTR8_dup2997|chr17:39376863-39377493:+|1.344877453190437|0.0081384620613751|7.37|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.2806701660156 2 479.281137 956.547722 0.15752 7.5496E-05 -0.414 -0.00019842 -0.25648 -0.00012293 479.28083564660005 57.995 0.50156 61.527 61.282 61.784 3.5317 35 31 2 0 0 0 0.82752 1 12528 12528 5.2307 0 1 68134 + 40934 31023 25855 25867 46876 46876 0.06771008296379932 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 422.5925598144531 3 422.592286 1264.75503 0.055599 2.3496E-05 0.57155 0.00024153 0.62715 0.00026503 422.59244871826786 60.836 0.53166 64.309 64.015 64.546 3.4737 63 43 2 0 0 0 0.56444 1 13496 13496 0.69767 0 1 333750 40935 7280 25856 25868 46877 46877 0.13324215564421138 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 422.59246826171875 3 422.592286 1264.75503 0.090072 3.8064E-05 0.54217 0.00022912 0.63224 0.00026718 422.9268274867881 59.831 0.38372 63.348 63.175 63.559 3.5169 51 32 2 0 0 0 0.56444 1 13132 13132 0.69767 0 1 281350 40936 7280 25856 25868 46878 46878 0.13324215564421138 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.592286 1264.75503 0.013298 5.6197E-06 0.22027 9.3086E-05 0.23357 9.8706E-05 422.9265641182168 60.982 0.063446 64.364 64.313 64.377 3.3815 -0.024432 -0.00062256 NaN 0.69767 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 39384 40937 7280 25856 25868 0.13324215564421138 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.592286 1264.75503 -0.50957 -0.00021534 1.2344 0.00052163 0.72478 0.00030629 422.5927602500772 61.249 0.23999 64.515 64.366 64.606 3.2654 0.12649 0.00066307 NaN 0.69767 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 55654 40938 7280 25856 25868 0.13324215564421138 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 422.592286 1264.75503 -0.64005 -0.00027048 1.2296 0.00051963 0.58958 0.00024915 422.5927918753105 61.237 0.39343 64.402 64.319 64.712 3.1651 0.013718 0.00065708 NaN 0.69767 36 30 2 NaN NaN NaN NaN 0 NaN NaN 0 74765 40939 7280 25856 25868 0.13324215564421138 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 422.592286 1264.75503 0.055599 2.3496E-05 0.57155 0.00024153 0.62715 0.00026503 422.59244871826786 60.836 0.53166 64.309 64.015 64.546 3.4737 -0.079018 -0.00017722 NaN 0.69767 63 43 2 NaN NaN NaN NaN 0 NaN NaN 0 333750 40940 7280 25856 25868 0.13324215564421138 SIMSSCLCMCM 11 Unmodified _SIMSSCLCMCM_ 0 0 0 REV__L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|74|1|anti-sense REV__L1PA4_dup2826|chr4:53228552-53230787:+|1.0130819055403697|0.0376084308025883|4.75|151.0|74|1|anti-sense MSMS UPN46_class_I_Rep_3 1 403.48126220703125 3 403.481872 1207.42379 NaN NaN NaN NaN NaN NaN NaN 38.772 1 38.772 38.272 39.272 0 0 0 0 0.38417 1 7405 7405 0.45452 0 1 + 40941 29621 25857 25869 46879 46879 -0.17162981235924235 SINEFEEL 8 Unmodified _SINEFEEL_ 0 0 0 REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|74|2|anti-sense REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.732177734375 2 490.732197 979.449842 -0.093333 -4.5802E-05 0.030894 1.5161E-05 -0.06244 -3.0641E-05 490.7320961246353 46.565 0.70626 50.265 49.926 50.632 3.6999 94 46 3 0 0 0 0.82752 1 9959 9959 15.847 0 1 196210 + 40942 24403 25858 25870 46880 46880 -0.040705218186189995 SINEFEEL 8 Unmodified _SINEFEEL_ 0 0 0 REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|74|2|anti-sense REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.7318420410156 2 490.732197 979.449842 0.14093 6.9158E-05 -0.24788 -0.00012164 -0.10695 -5.2484E-05 490.7319712415112 46.873 0.71582 50.224 49.918 50.634 3.3515 98 52 2 0 0 0 0.82752 1 10085 10085 15.847 0 1 243180 + 40943 24403 25858 25870 46881 46881 -0.040705218186189995 SINEFEEL 8 Unmodified _SINEFEEL_ 0 0 0 REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|74|2|anti-sense REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.7317810058594 2 490.732197 979.449842 0.080951 3.9725E-05 -0.2528 -0.00012406 -0.17185 -8.4331E-05 490.73199621892985 46.94 0.69437 50.184 49.948 50.642 3.2439 78 43 2 0 0 0 0.82752 1 10155 10155 11.64 0 1 269560 + 40944 24403 25858 25870 46882 46882 -0.040705218186189995 SINGLGVPPK 10 Unmodified _SINGLGVPPK_ 0 0 0 L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|45|3|sense L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|45|3|sense L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|45|3|sense MSMS UPN47_class_I_Rep_3 4 491.2723693847656 2 491.290017 980.565481 NaN NaN NaN NaN NaN NaN NaN 57.218 1 60.386 59.886 60.886 3.1681 0 0 0 0.53105 1 13206 13206 8.7454 0.15213 1 40945 9431 25859 25871 46883 46883 0.07442046822893644 SINLLKWLTK 10 Unmodified _SINLLKWLTK_ 0 0 0 MER21B_dup375|chr2:113909957-113910773:+|1.002708315159245|0.0140897718896969|6.15|151.0|47|3|anti-sense MER21B_dup375|chr2:113909957-113910773:+|1.002708315159245|0.0140897718896969|6.15|151.0|47|3|anti-sense MER21B_dup375|chr2:113909957-113910773:+|1.002708315159245|0.0140897718896969|6.15|151.0|47|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 608.385498046875 2 608.376623 1214.73869 0.63486 0.00038623 0.11421 6.948E-05 0.74906 0.00045571 608.3775983016002 107.8 0.08342 111.33 111.29 111.37 3.5345 13 9 3 0 0 0 0.55448 1 26088 26088 4.897 0.36815 1 4040700 40946 15873 25860 25872 46884 46884 0.1399141287929524 SINQCQNRF 9 Unmodified _SINQCQNRF_ 0 0 0 REV__ENST00000389622.6_1_3:97596741-97596864:+|nuORF REV__ENST00000389622.6_1_3:97596741-97596864:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.2700805664062 2 555.261465 1108.50838 NaN NaN NaN NaN NaN NaN NaN 61.368 1 64.634 64.134 65.134 3.2654 0 0 0 0.38916 1 14421 14421 3.2813 0 1 + 40947 22079 25861 25873 46885 46885 -0.041537437251463416 SINRSPVTV 9 Unmodified _SINRSPVTV_ 0 0 0 REV__ENSG00000085465|ENST00000369732|OVGP1 REV__ENSG00000085465|ENST00000369732|OVGP1 MULTI-MSMS UPN46_class_I_Rep_3 1 486.7779846191406 2 486.777274 971.539994 0.24155 0.00011758 -0.1309 -6.372E-05 0.11065 5.3862E-05 486.77717318460816 39.779 0.57781 39.779 39.548 40.126 0 87 58 2 0 0 0 0.19147 1 7648 7648 21.537 2.28 1 368600 + 40948 17954 25862 25874 46886 46886 0.05308572300475589 SINRSPVTV 9 Unmodified _SINRSPVTV_ 0 0 0 REV__ENSG00000085465|ENST00000369732|OVGP1 REV__ENSG00000085465|ENST00000369732|OVGP1 MULTI-MSMS UPN47_class_I_Rep_1 2 486.7768859863281 2 486.777274 971.539994 -0.28733 -0.00013987 0.08856 4.3109E-05 -0.19877 -9.6756E-05 486.77726942130147 35.145 0.83496 38.821 38.464 39.299 3.6762 163 60 4 0 0 0 0.13244 2 6365 6329;6365 27.629 2.5396 1 662440 + 40949 17954 25862 25874 46887;46888 46888 0.05308572300475589 SINRSPVTV 9 Unmodified _SINRSPVTV_ 0 0 0 REV__ENSG00000085465|ENST00000369732|OVGP1 REV__ENSG00000085465|ENST00000369732|OVGP1 MULTI-MSMS UPN47_class_I_Rep_2 3 486.7769470214844 2 486.777274 971.539994 -0.14928 -7.2664E-05 -0.045336 -2.2068E-05 -0.19461 -9.4733E-05 486.77719244511843 35.367 1.059 38.792 38.47 39.529 3.4253 162 70 3 0 0 0 0.13244 3 6483 6483;6562;6603 27.629 2.2295 1 633650 + 40950 17954 25862 25874 46889;46890;46891 46889 0.05308572300475589 SINRSPVTV 9 Unmodified _SINRSPVTV_ 0 0 0 REV__ENSG00000085465|ENST00000369732|OVGP1 REV__ENSG00000085465|ENST00000369732|OVGP1 MULTI-MSMS UPN47_class_I_Rep_3 4 486.7769470214844 2 486.777274 971.539994 -0.38738 -0.00018857 0.091495 4.4537E-05 -0.29588 -0.00014403 486.77727828527213 35.564 1.007 38.819 38.467 39.474 3.2547 165 70 3 0 0 0 0.097406 2 6560 6560;6677 34.402 1.616 1 680830 + 40951 17954 25862 25874 46892;46893 46892 0.05308572300475589 SINSKGQV 8 Unmodified _SINSKGQV_ 0 0 0 THE1D-int_dup927|chr5:169662848-169664475:-|1.068982143843286|0.0042627829509745|7.97|151.0|63|2|anti-sense THE1D-int_dup927|chr5:169662848-169664475:-|1.068982143843286|0.0042627829509745|7.97|151.0|63|2|anti-sense THE1D-int_dup927|chr5:169662848-169664475:-|1.068982143843286|0.0042627829509745|7.97|151.0|63|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 416.7559814453125 2 416.729792 831.445031 -0.13851 -5.7721E-05 0.13018 5.4251E-05 -0.0083252 -3.4694E-06 416.7297565023511 31.707 0.85128 31.707 31.234 32.085 0 96 60 2 0 0 0 0.82752 1 5249 5249 7.2892 0 1 197420 40952 32966 25863 25875 46894 46894 0.022566388292943884 SIPIHTVIFS 10 Unmodified _SIPIHTVIFS_ 0 0 0 REV__L1MC5a_dup6055|chr6:25018553-25019226:-|3.864286627020082|0.1063395533433307|5.18|151.0|32|1|anti-sense REV__L1MC5a_dup6055|chr6:25018553-25019226:-|3.864286627020082|0.1063395533433307|5.18|151.0|32|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.3192138671875 2 557.318774 1112.623 -0.060483 -3.3708E-05 -0.0069025 -3.8469E-06 -0.067386 -3.7555E-05 557.3187522640244 38.314 1.022 41.555 41.226 42.248 3.2414 113 74 2 0 0 0 0.56078 1 7623 7623 3.2813 0 1 94416 + 40953 27167 25864 25876 46895 46895 0.07118889028447484 SIPIPEGLR 9 Unmodified _SIPIPEGLR_ 0 0 0 REV__ENSG00000103876|ENST00000561421|FAH REV__ENSG00000103876|ENST00000561421|FAH MULTI-MSMS UPN48_class_I_Rep_1 5 491.27203369140625 2 491.290017 980.565481 0.18619 9.1473E-05 0.52479 0.00025783 0.71098 0.0003493 491.28913265228385 53.518 1.0287 57.037 56.544 57.573 3.5192 144 73 3 0 0 0 0.26948 1 11351 11351 15.847 0 1 680260 + 40954 18241 25865 25877 46896 46896 0.07442046822905013 SIPLYKRFG 9 Unmodified _SIPLYKRFG_ 0 0 0 REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|30|1|sense REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|30|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 540.8129272460938 2 540.813659 1079.61277 0.41258 0.00022313 -0.12421 -6.7174E-05 0.28837 0.00015596 540.813760487 49.286 0.63991 53.004 52.655 53.295 3.7175 57 43 2 0 0 0 0.48643 1 9862 9862 2.0598 0 1 97346 + 40955 25536 25866 25878 46897 46897 0.07614326093880663 SIPTERYFF 9 Unmodified _SIPTERYFF_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS UPN48_class_I_Rep_3 7 580.7941284179688 2 580.292756 1158.57096 0.50163 0.00029109 0.61662 0.00035782 1.1182 0.00064891 580.2932977106373 62.874 0.70782 66.383 65.959 66.667 3.5091 87 48 2 0 0 0 0.37599 1 13943 13943 9.3831 0 1 207910 40956 4092 25867 25879 46898 46898 -0.0019827438529773644 SIPVPFRK 8 Unmodified _SIPVPFRK_ 0 0 0 REV__L1MB7_dup19876|chr17:39313949-39314350:-|1.2426051081476763|0.0131943214584857|6.56|151.0|18|1|anti-sense REV__L1MB7_dup19876|chr17:39313949-39314350:-|1.2426051081476763|0.0131943214584857|6.56|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 472.2873840332031 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 87.65 1 91.037 90.537 91.537 3.3873 0 0 0 0.40625 1 21969 21969 2.3027 0 1 + 40957 26202 25868 25880 46899 46899 0.09150671893701201 SIQKLNRT 8 Unmodified _SIQKLNRT_ 0 0 0 REV__L1PB2_dup1326|chr8:58626394-58627289:-|4.498089099298391|0.1907549243571485|4.56|151.0|15|2|sense REV__L1PB2_dup1326|chr8:58626394-58627289:-|4.498089099298391|0.1907549243571485|4.56|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 480.2999267578125 2 480.285266 958.555979 NaN NaN NaN NaN NaN NaN NaN 57.15 1 60.607 60.107 61.107 3.4572 0 0 0 0.3903 1 13104 13104 11.64 0 1 + 40958 30518 25869 25881 46900 46900 0.07504278537362552 SIQKLNRT 8 Unmodified _SIQKLNRT_ 0 0 0 REV__L1PB2_dup1326|chr8:58626394-58627289:-|4.498089099298391|0.1907549243571485|4.56|151.0|15|2|sense REV__L1PB2_dup1326|chr8:58626394-58627289:-|4.498089099298391|0.1907549243571485|4.56|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 480.29962158203125 2 480.285266 958.555979 NaN NaN NaN NaN NaN NaN NaN 57.462 1 60.753 60.253 61.253 3.2912 0 0 0 0.40157 1 13232 13232 7.2892 0 1 + 40959 30518 25869 25881 46901 46901 0.07504278537362552 SIQLRNYVQG 10 Unmodified _SIQLRNYVQG_ 0 0 0 REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 589.3197021484375 2 589.319837 1176.62512 0.14763 8.7003E-05 -1.0721 -0.00063179 -0.92443 -0.00054479 589.3191313533034 46.61 0.40604 50.31 50.241 50.647 3.6999 43 25 2 0 0 0 0.56078 1 9986 9986 3.2813 0.28607 1 88686 + 40960 21961 25870 25882 46902 46902 0.043873177662590024 SIQNKQNKY 9 Unmodified _SIQNKQNKY_ 0 0 0 REV__nc|ENSG00000133863|Q9BXT5|TEX15 REV__nc|ENSG00000133863|Q9BXT5|TEX15 MSMS UPN47_class_I_Rep_2 3 561.78271484375 2 561.798737 1121.58292 NaN NaN NaN NaN NaN NaN NaN 41.781 1 45.146 44.646 45.646 3.3655 0 0 0 0.39518 1 8454 8454 1.8442 0 1 + 40961 19074 25871 25883 46903 46903 0.026993423579142473 SIQQSHPHW 9 Unmodified _SIQQSHPHW_ 0 0 0 REV__L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|31|2|sense REV__L1M2_dup4940|chr9:85600367-85602600:+|1.6600547440780378|0.0482206590915807|5.11|151.0|31|2|sense MSMS UPN47_class_I_Rep_3 4 560.2713012695312 2 560.270147 1118.52574 NaN NaN NaN NaN NaN NaN NaN 87.527 1 90.914 90.414 91.414 3.3873 0 0 0 0.39428 1 21934 21934 2.0598 0 1 + 40962 24215 25872 25884 46904 46904 -0.028780801278116996 SIQRISTY 8 Unmodified _SIQRISTY_ 0 0 0 REV__L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|17|2|sense REV__L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 484.2630615234375 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 39.332 1 42.988 42.488 43.488 3.6557 0 0 0 0.40472 1 6867 6867 4.3292 0 1 + 40963 27032 25873 25885 46905 46905 0.028848834091263598 SIQRRRPLP 9 Unmodified _SIQRRRPLP_ 0 0 0 REV__L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|74|3|sense REV__L1PB1_dup5775|chr7:64527793-64530604:+|2.1287694856475947|0.3603564197832017|2.56|151.0|74|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 561.8469848632812 2 561.846356 1121.67816 0.45461 0.00025542 -0.83634 -0.0004699 -0.38173 -0.00021448 561.8458098774329 87.768 0.5188 91.387 91.136 91.655 3.6187 68 52 2 0 0 0 0.49187 1 21067 21067 1.4819 0 1 166820 + 40964 30452 25874 25886 46906 46906 0.12218740339585565 SIRKWGKI 8 Unmodified _SIRKWGKI_ 0 0 0 REV__L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|132|2|sense REV__L1MA2_dup4201|chrX:79225839-79233079:-|1.55360927545898|0.0111704464141486|7.12|148.0|132|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.3081970214844 2 494.308544 986.602535 0.34557 0.00017082 -0.7294 -0.00036055 -0.38383 -0.00018973 494.3082935447923 58.764 0.51704 62.046 61.76 62.277 3.2818 38 30 2 0 0 0 0.82752 1 13633 13633 3.9444 0.068064 1 56081 + 40965 24872 25875 25887 46907 46907 0.10869763159325885 SISALFIESF 10 Unmodified _SISALFIESF_ 0 0 0 REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|113|3|anti-sense REV__L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|113|3|anti-sense MSMS UPN48_class_I_Rep_3 7 557.2947998046875 2 557.294965 1112.57538 NaN NaN NaN NaN NaN NaN NaN 89.23 1 93.06 92.56 93.56 3.8293 0 0 0 0.53105 1 21177 21177 12.241 0 1 + 40966 28446 25876 25888 46908 46908 0.02359190037600456 SISELVVIT 9 Unmodified _SISELVVIT_ 0 0 0 REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|119|1|anti-sense REV__L1M1_dup9344|chr21:15784590-15787473:+|15.385598708455596|0.185927186723819|6.37|151.0|119|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.7843017578125 2 480.784233 959.553913 0.1476 7.0964E-05 0.0071324 3.4291E-06 0.15473 7.4393E-05 480.78407342335385 77.623 0.78699 81.052 80.782 81.569 3.4289 169 76 3 0 0 0 0.16559 1 19390 19390 24.021 4.7636 1 444620 + 40967 24170 25877 25889 46909 46909 0.07251805008900192 SISFTNQFCT 10 Unmodified _SISFTNQFCT_ 0 0 0 REV__L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|40|1|anti-sense REV__L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.2581176757812 2 574.258056 1146.50156 0.35884 0.00020606 -0.059923 -3.4411E-05 0.29891 0.00017165 574.2579404057238 57.31 0.92665 60.747 60.415 61.342 3.437 192 79 3 0 0 0 0.22298 3 13153 13115;13153;13188 53.833 17.706 1 608010 + 40968 24564 25878 25890 46910;46911;46912 46911 -0.0658310139635887 SISFTNQFCT 10 Unmodified _SISFTNQFCT_ 0 0 0 REV__L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|40|1|anti-sense REV__L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.2583618164062 2 574.258056 1146.50156 0.35987 0.00020666 -0.14096 -8.0945E-05 0.21892 0.00012571 574.2579705759196 57.629 1.0167 60.797 60.455 61.471 3.1681 194 77 4 0 0 0 0.17566 2 13329 13329;13407 62.573 26.446 1 718190 + 40969 24564 25878 25890 46913;46914 46913 -0.0658310139635887 SISFTNQFCT 10 Unmodified _SISFTNQFCT_ 0 0 0 REV__L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|40|1|anti-sense REV__L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|40|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 574.258056 1146.50156 0.35884 0.00020606 -0.059923 -3.4411E-05 0.29891 0.00017165 574.2579404057238 57.31 0.92665 60.747 60.415 61.342 3.437 -0.024863 4.1193E-05 NaN 62.573 192 79 3 NaN NaN NaN NaN 0 NaN NaN 0 608010 + 40970 24564 25878 25890 -0.0658310139635887 SISKKTKTKK 10 Unmodified _SISKKTKTKK_ 0 0 0 AluSx_dup25938|chr4:39749917-39750216:+|1.123066825965674|0.0384220770834327|4.87|151.0|14|3|sense AluSx_dup25938|chr4:39749917-39750216:+|1.123066825965674|0.0384220770834327|4.87|151.0|14|3|sense AluSx_dup25938|chr4:39749917-39750216:+|1.123066825965674|0.0384220770834327|4.87|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 574.8703002929688 2 574.871705 1147.72886 0.47509 0.00027311 -0.86385 -0.0004966 -0.38876 -0.00022349 575.3730828328323 108.43 0.1082 112.11 112.04 112.15 3.6751 20 8 4 0 0 0 0.56189 1 25659 25659 2.4985 0 1 2694200 40971 276 25879 25891 46915 46915 0.16090224873937586 SISLMNKYA 9 Unmodified _SISLMNKYA_ 0 0 0 L1MA8_dup9772|chr17:28779080-28779469:+|1.0932564544982564|0.048632512644737|4.49|151.0|2|1|sense L1MA8_dup9772|chr17:28779080-28779469:+|1.0932564544982564|0.048632512644737|4.49|151.0|2|1|sense L1MA8_dup9772|chr17:28779080-28779469:+|1.0932564544982564|0.048632512644737|4.49|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 513.7434692382812 2 513.76806 1025.52157 NaN NaN NaN NaN NaN NaN NaN 67.386 1 67.386 66.886 67.886 0 0 0 0 0.39428 1 15339 15339 2.0598 0.40713 1 40972 10074 25880 25892 46916 46916 0.00982694334243206 SISLPPPQR 9 Unmodified _SISLPPPQR_ 0 0 0 REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|157|3|anti-sense REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|157|3|anti-sense MSMS UPN48_class_I_Rep_1 5 497.78662109375 2 497.787641 993.56073 NaN NaN NaN NaN NaN NaN NaN 42.564 1 46.072 45.572 46.572 3.5079 0 0 0 0.39518 1 7887 7887 1.8442 0 1 + 40973 26630 25881 25893 46917 46917 0.06369162680141471 SISLVIRFHI 10 Unmodified _SISLVIRFHI_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 592.861328125 2 592.861141 1183.70773 0.63481 0.00037635 0.56093 0.00033255 1.1957 0.00070891 592.8613401970423 109.33 0.68484 112.87 112.69 113.37 3.5307 200 94 3 0 0 0 0.52083 1 26628 26628 9.3831 0 1 5262700 + 40974 24884 25882 25894 46918 46918 0.12322259565098648 SISLVIRFHI 10 Unmodified _SISLVIRFHI_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 592.861141 1183.70773 0.50796 0.00030115 0.61277 0.00036329 1.1207 0.00066444 592.8613235900506 109.51 0.4137 113.04 113.01 113.42 3.5347 0.11333 0.00018238 NaN 9.3831 89 57 2 NaN NaN NaN NaN 0 NaN NaN 0 1007300 + 40975 24884 25882 25894 0.12322259565098648 SISLVIRFHI 10 Unmodified _SISLVIRFHI_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 592.861141 1183.70773 0.48376 0.0002868 0.49376 0.00029273 0.97752 0.00057953 592.8612055193383 109.29 0.58924 112.96 112.84 113.43 3.6715 0.031839 4.127E-05 NaN 9.3831 118 78 2 NaN NaN NaN NaN 0 NaN NaN 0 1444000 + 40976 24884 25882 25894 0.12322259565098648 SISLVIRFHI 10 Unmodified _SISLVIRFHI_ 0 0 0 REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense REV__L1MA2_dup5414|chr11:17320969-17324425:-|2.5965431182849024|0.0891407611104298|4.86|151.0|178|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 592.861141 1183.70773 0.51824 0.00030724 0.56019 0.00033212 1.0784 0.00063936 593.3630721739409 109.24 0.49931 112.91 112.81 113.31 3.6751 -0.016394 0.00012004 NaN 9.3831 91 68 2 NaN NaN NaN NaN 0 NaN NaN 0 2292900 + 40977 24884 25882 25894 0.12322259565098648 SISPMIPWNPQ 11 Unmodified _SISPMIPWNPQ_ 0 0 0 REV__ENST00000546676.1_1_12:50529563-50529746:-|nuORF REV__ENST00000546676.1_1_12:50529563-50529746:-|nuORF MSMS UPN48_class_I_Rep_2 6 635.318359375 2 635.318448 1268.62234 NaN NaN NaN NaN NaN NaN NaN 57.564 1 61.079 60.579 61.579 3.5142 0 0 0 0.38417 1 12460 12460 2.9952 0 1 + 40978 22938 25883 25895 46919 46919 -0.0012227368288222351 SISSWIIAAWT 11 Unmodified _SISSWIIAAWT_ 0 0 0 ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1 ENSG00000105642|ENST00000684775|KCNN1 ENSG00000105642|ENST00000684775|KCNN1 MULTI-MSMS UPN47_class_I_Rep_2 3 617.8243408203125 2 617.826963 1233.63937 0.40194 0.00024833 -1.0685 -0.00066013 -0.66654 -0.00041181 617.8260716904446 69.53 0.47987 72.806 72.433 72.913 3.2761 51 36 2 0 0 0 0.67264 1 16895 16895 1.1933 0 1 79116 40979 1749 25884 25896 46920 46920 0.03189970194557645 SITTESLKVR 10 Unmodified _SITTESLKVR_ 0 0 0 ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 567.8317260742188 2 567.32987 1132.64519 0.41193 0.0002337 0.066599 3.7784E-05 0.47853 0.00027148 567.3297070149613 95.259 0.72995 98.876 98.548 99.278 3.6167 194 91 3 0 0 0 0.56309 1 22881 22881 1.6526 0 1 402570 40980 7430 25885 25897 46921 46921 0.08417068706239661 SITTESLKVR 10 Unmodified _SITTESLKVR_ 0 0 0 ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 567.32987 1132.64519 0.63482 0.00036015 -0.13322 -7.5579E-05 0.50161 0.00028458 567.3295095577548 95.442 0.44536 98.917 98.686 99.131 3.4753 -3.8293E-06 -0.00013062 NaN 1.6526 110 61 2 NaN NaN NaN NaN 0 NaN NaN 0 191950 40981 7430 25885 25897 0.08417068706239661 SITTESLKVR 10 Unmodified _SITTESLKVR_ 0 0 0 ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 567.32987 1132.64519 0.50455 0.00028624 -0.18162 -0.00010304 0.32293 0.00018321 567.3296183583981 95.563 0.49615 98.972 98.692 99.188 3.4095 0.05484 -0.00018554 NaN 1.6526 121 69 2 NaN NaN NaN NaN 0 NaN NaN 0 202700 40982 7430 25885 25897 0.08417068706239661 SITTESLKVR 10 Unmodified _SITTESLKVR_ 0 0 0 ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF ENST00000556052.1_1_14:23533533-23533737:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 567.32987 1132.64519 0.48792 0.00027681 -0.029546 -1.6762E-05 0.45837 0.00026005 567.3296672903763 95.116 0.63504 98.896 98.555 99.19 3.7804 -0.021234 -1.2989E-05 NaN 1.6526 204 88 3 NaN NaN NaN NaN 0 NaN NaN 0 349780 40983 7430 25885 25897 0.08417068706239661 SITWELIRN 9 Unmodified _SITWELIRN_ 0 0 0 MER5A_dup2577|chr2:9498919-9499078:-|1.167101325874239|0.4127291461222726|1.5|151.0|1|1|sense MER5A_dup2577|chr2:9498919-9499078:-|1.167101325874239|0.4127291461222726|1.5|151.0|1|1|sense MER5A_dup2577|chr2:9498919-9499078:-|1.167101325874239|0.4127291461222726|1.5|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 566.313232421875 2 566.31148 1130.60841 NaN NaN NaN NaN NaN NaN NaN 34.815 1 38.487 37.987 38.987 3.6721 0 0 0 0.38478 1 5572 5572 4.3292 0.38484 1 40984 16144 25886 25898 46922 46922 0.04832816880343671 SITYIPEHIK 10 Unmodified _SITYIPEHIK_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MSMS UPN46_class_I_Rep_3 1 600.8372192382812 2 600.834788 1199.65502 NaN NaN NaN NaN NaN NaN NaN 88.489 1 88.489 87.989 88.989 0 0 0 0 0.53105 1 21253 21253 1.4819 0.15237 1 40985 4524 25887 25899 46923 46923 0.06318256711597314 SIVAISLNIT 10 Unmodified _SIVAISLNIT_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-SECPEP UPN46_class_I_Rep_3 1 515.3079223632812 2 515.810782 1029.60701 0.32354 0.00016688 -1.1323 -0.00058406 -0.80877 -0.00041717 515.8103787637459 89.52 0.023071 89.52 89.51 89.533 0 4 2 2 0 0 0 0.84575 1 21541 21541 9.3831 0 1 46657 40986 1092 25888 25900 46924 46924 0.09339182791541134 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_1 5 525.284912109375 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 47.008 1 50.527 50.027 51.027 3.5192 0 0 0 0.13551 1 9242 9242 20.454 0 1 + 40987 21800 25889 25901 46925 46925 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_1 5 525.2848510742188 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 47.151 1 50.673 50.173 51.173 3.5219 0 0 0 0.13551 1 9286 9286 20.454 0 1 + 40988 21800 25889 25901 46926 46926 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_1 5 525.2846069335938 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 47.313 1 50.835 50.335 51.335 3.5219 0 0 0 0.29868 1 9336 9336 10.824 0 1 + 40989 21800 25889 25901 46927 46927 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_1 5 525.2859497070312 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 47.321 1 50.843 50.343 51.343 3.5219 0 0 0 0.29868 1 9339 9339 10.824 0 1 + 40990 21800 25889 25901 46928 46928 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_2 6 525.284423828125 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 46.655 1 50.404 49.904 50.904 3.7494 0 0 0 0.13551 1 9142 9142 20.454 0 1 + 40991 21800 25889 25901 46929 46929 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_2 6 525.2849731445312 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 46.798 1 50.547 50.047 51.047 3.7494 0 0 0 0.13551 1 9186 9186 20.454 0 1 + 40992 21800 25889 25901 46930 46930 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_2 6 525.28466796875 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 46.939 1 50.689 50.189 51.189 3.7494 0 0 0 0.2088 1 9230 9230 15.847 0 1 + 40993 21800 25889 25901 46931 46931 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_3 7 525.2845458984375 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 46.908 1 50.544 50.044 51.044 3.6363 0 0 0 0.22485 1 9150 9150 14.838 0 1 + 40994 21800 25889 25901 46932 46932 0.03699528591369017 SIVAWLTPY 9 Unmodified _SIVAWLTPY_ 0 0 0 REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF MSMS UPN48_class_I_Rep_3 7 525.2850952148438 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 47.061 1 50.698 50.198 51.198 3.6363 0 0 0 0.13551 1 9197 9197 20.454 0 1 + 40995 21800 25889 25901 46933 46933 0.03699528591369017 SIVDAFVRKG 10 Unmodified _SIVDAFVRKG_ 0 0 0 REV__MLT1C_dup15883|chr15:85652583-85653022:-|1.2690379486762984|0.0746454685662537|4.09|151.0|10|3|sense REV__MLT1C_dup15883|chr15:85652583-85653022:-|1.2690379486762984|0.0746454685662537|4.09|151.0|10|3|sense MSMS UPN47_class_I_Rep_2 3 546.782958984375 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 50.642 1 53.981 53.481 54.481 3.3386 0 0 0 0.53105 1 11149 11149 6.2058 0.47393 1 + 40996 31638 25890 25902 46934 46934 0.07181120742939129 SIVIRCCYES 10 Unmodified _SIVIRCCYES_ 0 0 0 REV__L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|52|2|anti-sense REV__L1M4c_dup1413|chr7:67221027-67221915:-|1.2835049439607704|0.0569410308040213|4.49|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_3 4 586.7733764648438 2 586.775559 1171.53657 NaN NaN NaN NaN NaN NaN NaN 115.72 1 119.19 118.69 119.69 3.462 0 0 0 0.53105 1 28464 28464 1.3295 0.13619 1 + 40997 24574 25891 25903 46935 46935 -0.04234181860078934 SIVPNLHFV 9 Unmodified _SIVPNLHFV_ 0 0 0 REV__LTR16A2_dup380|chr3:87934296-87934722:+|1.0175350457724577|0.0022319557825644|8.83|124.0|8|3|sense REV__LTR16A2_dup380|chr3:87934296-87934722:+|1.0175350457724577|0.0022319557825644|8.83|124.0|8|3|sense MSMS UPN48_class_I_Rep_3 7 513.2926025390625 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 63.903 1 67.411 66.911 67.911 3.5083 0 0 0 0.38299 1 14324 14324 4.756 0.81161 1 + 40998 30852 25892 25904 46936 46936 0.05926350685513171 SIVTTIIEL 9 Unmodified _SIVTTIIEL_ 0 0 0 REV__Tigger1_dup6231|chr8:47445106-47446582:+|3.4008794908906856|0.1296518130974469|4.71|151.0|80|2|anti-sense REV__Tigger1_dup6231|chr8:47445106-47446582:+|3.4008794908906856|0.1296518130974469|4.71|151.0|80|2|anti-sense MSMS UPN47_class_I_Rep_3 4 494.7822570800781 2 494.799883 987.585213 NaN NaN NaN NaN NaN NaN NaN 78.801 1 82.096 81.596 82.596 3.295 0 0 0 0.36505 1 19667 19667 7.2892 2.0586 1 + 40999 32492 25893 25905 46937 46937 0.09092378042998916 SIWKLSIKF 9 Unmodified _SIWKLSIKF_ 0 0 0 REV__L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|75|2|sense REV__L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|75|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 561.87060546875 2 561.33951 1120.66447 0.49361 0.00027708 1.9818 0.0011125 2.4754 0.0013895 561.8421977401279 108.08 0.05127 111.75 111.71 111.76 3.6746 11 5 3 0 0 0 0.11598 1 25590 25590 7.2892 0.56607 1 682460 + 41000 29157 25894 25906 46938 46938 0.10896069787804663 SIWRKKRG 8 Unmodified _SIWRKKRG_ 0 0 0 REV__ENST00000527401.5_1_11:45954650-45954818:-|nuORF REV__ENST00000527401.5_1_11:45954650-45954818:-|nuORF MSMS UPN47_class_I_Rep_3 4 515.8150634765625 2 515.817067 1029.61958 NaN NaN NaN NaN NaN NaN NaN 83.645 1 86.995 86.495 87.495 3.35 0 0 0 0.40404 1 20984 20984 5.2307 0.90143 1 + 41001 22818 25895 25907 46939 46939 0.10595683765109243 SIWWCSVFW 9 Unmodified _SIWWCSVFW_ 0 0 0 L1MC1_dup5105|chr6:34361229-34362166:+|1.9922175766127288|0.0121731823281629|7.35|151.0|43|1|anti-sense L1MC1_dup5105|chr6:34361229-34362166:+|1.9922175766127288|0.0121731823281629|7.35|151.0|43|1|anti-sense L1MC1_dup5105|chr6:34361229-34362166:+|1.9922175766127288|0.0121731823281629|7.35|151.0|43|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 404.67169189453125 3 405.188155 1212.54264 -0.10166 -4.1189E-05 3.0637 0.0012414 2.9621 0.0012002 405.52395736142046 72.16 0.059387 75.634 75.608 75.667 3.4732 5 4 2 0 0 0 0.12235 1 16914 16914 0.23584 0 1 14357 41002 11160 25896 25908 46940 46940 -0.055132955662429595 SIYIQGYYWYV 11 Unmodified _SIYIQGYYWYV_ 0 0 0 L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|173|3|anti-sense L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|173|3|anti-sense L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|173|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.55865478515625 3 485.571211 1453.6918 NaN NaN NaN NaN NaN NaN NaN 37.109 1 40.508 40.008 41.008 3.3988 0 0 0 0.38417 1 7038 7038 1.4551 0 1 41003 9768 25897 25909 46941 46941 -0.01689491462479964 SIYIYICIYS 10 Unmodified _SIYIYICIYS_ 0 0 0 REV__L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|23|2|anti-sense REV__L1ME1_dup11252|chr6:25031283-25031699:+|1.039969110704712|0.022725033337984|5.52|150.0|23|2|anti-sense MSMS UPN48_class_I_Rep_2 6 619.3118286132812 2 619.3123 1236.61005 NaN NaN NaN NaN NaN NaN NaN 31.707 1 35.348 34.848 35.848 3.641 0 0 0 0.53105 1 4804 4804 1.4819 0.15237 1 + 41004 27576 25898 25910 46942 46942 0.0012068985406585853 SIYPKNRSPP 10 Unmodified _SIYPKNRSPP_ 0 0 0 REV__ENSG00000198752|ENST00000361246|CDC42BPB REV__ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS UPN48_class_I_Rep_2 6 579.818115234375 2 579.81693 1157.61931 0.40978 0.0002376 0.0065188 3.7797E-06 0.4163 0.00024138 579.8169034216139 42.916 0.60223 46.673 46.355 46.957 3.7579 84 48 2 0 0 0 0.56333 1 8050 8050 1.4819 0 1 213550 + 41005 21144 25899 25911 46943 46943 0.046802192546238075 SIYSFITMKS 10 Unmodified _SIYSFITMKS_ 0 0 0 L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|117|2|anti-sense L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|117|2|anti-sense L1ME1_dup11859|chr6:90015082-90017266:-|1.037958496050037|0.0381438803834696|4.77|150.0|117|2|anti-sense MSMS UPN47_class_I_Rep_2 3 588.7232055664062 2 588.8021 1175.58965 NaN NaN NaN NaN NaN NaN NaN 47.439 1 50.788 50.288 51.288 3.3492 0 0 0 0.53105 1 10183 10183 5.2969 0 1 41006 12185 25900 25912 46944 46944 0.008875191942479432 SIYSLLLV 8 Unmodified _SIYSLLLV_ 0 0 0 REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|123|3|anti-sense REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2799377441406 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 58.76 1 62.177 61.677 62.677 3.4171 0 0 0 0.40604 1 13593 13593 2.5775 0 1 + 41007 26407 25901 25913 46945 46945 0.08561027705445667 SIYSLLLV 8 Unmodified _SIYSLLLV_ 0 0 0 REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|123|3|anti-sense REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2798767089844 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 58.964 1 62.381 61.881 62.881 3.4171 0 0 0 0.40604 1 13655 13655 2.5775 0 1 + 41008 26407 25901 25913 46946 46946 0.08561027705445667 SIYSLLLV 8 Unmodified _SIYSLLLV_ 0 0 0 REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|123|3|anti-sense REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2798767089844 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 59.14 1 62.557 62.057 63.057 3.4171 0 0 0 0.40738 1 13710 13710 0.79363 0 1 + 41009 26407 25901 25913 46947 46947 0.08561027705445667 SIYTYPFVCY 10 Unmodified _SIYTYPFVCY_ 0 0 0 REV__MER44B_dup1506|chr11:72859116-72859654:+|1.2349841892213815|0.0066328490603535|7.54|148.0|24|1|anti-sense REV__MER44B_dup1506|chr11:72859116-72859654:+|1.2349841892213815|0.0066328490603535|7.54|148.0|24|1|anti-sense MSMS UPN47_class_I_Rep_1 2 628.2882690429688 2 628.288825 1254.5631 NaN NaN NaN NaN NaN NaN NaN 51.148 1 54.741 54.241 55.241 3.5932 0 0 0 0.53105 1 11277 11277 1.6526 0.45928 1 + 41010 31316 25902 25914 46948 46948 -0.0540016969705448 SKARELCP 8 Unmodified _SKARELCP_ 0 0 0 ENST00000258412.7_1_2:219139684-219139855:-|nuORF ENST00000258412.7_1_2:219139684-219139855:-|nuORF ENST00000258412.7_1_2:219139684-219139855:-|nuORF MSMS UPN48_class_I_Rep_2 6 452.239990234375 2 452.23947 902.464386 NaN NaN NaN NaN NaN NaN NaN 50.48 1 54.175 53.675 54.675 3.6946 0 0 0 0.40753 1 10309 10309 0.6015 0 1 41011 5937 25903 25915 46949 46949 0.009252718485299738 SKAVRDFIL 9 Unmodified _SKAVRDFIL_ 0 0 0 REV__L1ME1_dup22477|chr12:57355487-57356828:-|3.4369386557288006|0.0343268343952864|6.65|151.0|17|1|sense REV__L1ME1_dup22477|chr12:57355487-57356828:-|3.4369386557288006|0.0343268343952864|6.65|151.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 524.8109741210938 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 61.104 1 64.578 64.078 65.078 3.4737 0 0 0 0.39598 1 13568 13568 1.6526 0 1 + 41012 27678 25904 25916 46950 46950 0.08578022231290561 SKCPKLPK 8 Unmodified _SKCPKLPK_ 0 0 0 ENSG00000139354|ENST00000547754|GAS2L3 ENSG00000139354|ENST00000547754|GAS2L3 ENSG00000139354|ENST00000547754|GAS2L3 MSMS UPN47_class_I_Rep_3 4 450.7720642089844 2 450.770406 899.526258 NaN NaN NaN NaN NaN NaN NaN 118.18 1 121.6 121.1 122.1 3.4238 0 0 0 0.40753 1 29141 29141 0.6015 0 1 41013 3137 25905 25917 46951 46951 0.07247623267687686 SKCQLLPI 8 Unmodified _SKCQLLPI_ 0 0 0 REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|114|1|anti-sense REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|114|1|anti-sense MSMS UPN48_class_I_Rep_1 5 451.2628479003906 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 18.804 1 22.335 21.835 22.835 3.5313 0 0 0 0.40753 1 1323 1323 0.6015 0 1 + 41014 26358 25906 25918 46952 46952 0.05603917030782668 SKCQLLPI 8 Unmodified _SKCQLLPI_ 0 0 0 REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|114|1|anti-sense REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|114|1|anti-sense MSMS UPN48_class_I_Rep_1 5 451.2631530761719 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 114.21 1 117.84 117.34 118.34 3.6301 0 0 0 0.40753 1 27762 27762 0.6015 0 1 + 41015 26358 25906 25918 46953 46953 0.05603917030782668 SKCQLLPI 8 Unmodified _SKCQLLPI_ 0 0 0 REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|114|1|anti-sense REV__L1MB8_dup12564|chr13:100354288-100357210:+|1.0697020473747896|0.085919142092515|3.64|149.0|114|1|anti-sense MSMS UPN48_class_I_Rep_2 6 451.2630310058594 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 115.44 1 119.1 118.6 119.6 3.6616 0 0 0 0.40753 1 27629 27629 0.6015 0 1 + 41016 26358 25906 25918 46954 46954 0.05603917030782668 SKDHPWPFF 9 Unmodified _SKDHPWPFF_ 0 0 0 REV__ENSG00000153944.12,MSI2,chr17,+,I30.1,57655745,57671473|78|18.16|1|intron REV__ENSG00000153944.12,MSI2,chr17,+,I30.1,57655745,57671473|78|18.16|1|intron MSMS UPN48_class_I_Rep_3 7 580.7776489257812 2 580.779816 1159.54508 NaN NaN NaN NaN NaN NaN NaN 51.746 1 55.356 54.856 55.856 3.6105 0 0 0 0.38639 1 10632 10632 3.9444 0.3479 1 + 41017 19724 25907 25919 46955 46955 -0.028311238369042258 SKEMWIRY 8 Unmodified _SKEMWIRY_ 0 0 0 REV__L1PBa_dup74|chr1:159029981-159031725:-|1.4974506363669895|0.4428763395161298|1.76|151.0|14|1|sense REV__L1PBa_dup74|chr1:159029981-159031725:-|1.4974506363669895|0.4428763395161298|1.76|151.0|14|1|sense MSMS UPN47_class_I_Rep_3 4 556.7807006835938 2 556.781502 1111.54845 NaN NaN NaN NaN NaN NaN NaN 35.341 1 38.605 38.105 39.105 3.2639 0 0 0 0.4044 1 6535 6535 4.756 0.81161 1 + 41018 30660 25908 25920 46956 46956 -0.002861970545609438 SKFKFKNARI 10 Unmodified _SKFKFKNARI_ 0 0 0 REV__L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|31|1|sense REV__L1PA6_dup2179|chr5:134331308-134337485:-|1.4629290184001753|0.2459376767527446|2.57|151.0|31|1|sense MSMS UPN47_class_I_Rep_1 2 619.868896484375 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 86.591 1 90.206 89.706 90.706 3.6153 0 0 0 0.53105 1 21632 21632 1.6526 0.45928 1 + 41019 29854 25909 25921 46957 46957 0.1201706431365892 SKFLRNGM 8 Unmodified _SKFLRNGM_ 0 0 0 L1MB4_dup4213|chr9:40952372-40952621:-|1.1165278885638177|0.1419946616288208|2.98|151.0|10|1|anti-sense L1MB4_dup4213|chr9:40952372-40952621:-|1.1165278885638177|0.1419946616288208|2.98|151.0|10|1|anti-sense L1MB4_dup4213|chr9:40952372-40952621:-|1.1165278885638177|0.1419946616288208|2.98|151.0|10|1|anti-sense MSMS UPN46_class_I_Rep_3 1 476.7581481933594 2 476.755287 951.496021 NaN NaN NaN NaN NaN NaN NaN 116.37 1 116.37 115.87 116.87 0 0 0 0 0.40625 1 28803 28803 2.3027 0 1 41020 10520 25910 25922 46958 46958 0.018332646024987298 SKGKGRVKHHM 11 Unmodified _SKGKGRVKHHM_ 0 0 0 ENSG00000213171|ENST00000368820|LINGO4 ENSG00000213171|ENST00000368820|LINGO4 ENSG00000213171|ENST00000368820|LINGO4 MULTI-MSMS UPN48_class_I_Rep_2 6 632.3560791015625 2 632.856398 1263.69824 0.48857 0.00030919 0.012088 7.65E-06 0.50066 0.00031684 632.8562494284283 71.143 0.11584 74.693 74.637 74.753 3.5505 21 11 3 0 0 0 0.67264 1 16589 16589 1.1933 0 1 107470 41021 5584 25911 25923 46959 46959 0.0769416800790168 SKGKYRLQ 8 Unmodified _SKGKYRLQ_ 0 0 0 L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|77|3|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|77|3|sense L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|77|3|sense MSMS UPN48_class_I_Rep_1 5 490.2871398925781 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 34.738 1 38.253 37.753 38.753 3.5144 0 0 0 0.40746 1 5595 5595 0.69038 0 1 41022 9718 25912 25924 46960 46960 0.07092582399980074 SKGLEYTFL 9 Unmodified _SKGLEYTFL_ 0 0 0 L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|33|2|sense L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|33|2|sense L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.2821655273438 2 529.281857 1056.54916 0.13471 7.1302E-05 -0.12239 -6.478E-05 0.012323 6.5222E-06 529.2818514053257 66.584 0.077652 69.843 69.819 69.896 3.2588 9 6 2 0 0 0 0.47493 1 16017 16017 3.2813 0 1 42936 41023 10625 25913 25925 46961 46961 0.023149208661379816 SKGLEYTFL 9 Unmodified _SKGLEYTFL_ 0 0 0 L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|33|2|sense L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|33|2|sense L1MB5_dup5496|chr10:48410208-48411788:-|1.4820417716860874|0.0766968918808086|4.27|151.0|33|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 529.281857 1056.54916 0.13471 7.1302E-05 -0.12239 -6.478E-05 0.012323 6.5222E-06 529.2818514053257 66.584 0.077652 69.843 69.819 69.896 3.2588 0 0 NaN 3.2813 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 42936 41024 10625 25913 25925 0.023149208661379816 SKGPTTQW 8 Unmodified _SKGPTTQW_ 0 0 0 REV__L1MEg_dup6723|chr7:102385067-102385459:+|2.1753386334112497|0.3610478167959381|2.59|151.0|15|1|anti-sense REV__L1MEg_dup6723|chr7:102385067-102385459:+|2.1753386334112497|0.3610478167959381|2.59|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 452.7315368652344 2 452.729792 903.445031 NaN NaN NaN NaN NaN NaN NaN 105.9 1 109.61 109.11 110.11 3.7088 0 0 0 0.40472 1 25975 25975 4.3292 1.7518 1 + 41025 28775 25914 25926 46962 46962 -0.010553611707109667 SKHLRIHTKE 10 Unmodified _SKHLRIHTKE_ 0 0 0 nc|ENSG00000274349|Q5TYW1-2|ZNF658;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF;ENSG00000274349|ENST00000621410|ZNF658;ENST00000377618.4_9:39444499-39464431:-|nuORF nc|ENSG00000274349|Q5TYW1-2|ZNF658 nc|ENSG00000274349|Q5TYW1-2|ZNF658 MULTI-MSMS UPN47_class_I_Rep_2 3 624.8624267578125 2 624.862203 1247.70985 0.048297 3.0179E-05 -0.50471 -0.00031537 -0.45641 -0.0002852 624.8619944716044 12.175 0.2726 15.564 15.486 15.759 3.3885 76 35 3 0 0 0 0.56296 1 25 25 1.4819 0 1 123090 41026 5820 25915 25927 46963 46963 0.09590688302864692 SKHVEIKQY 9 Unmodified _SKHVEIKQY_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.812255859375 2 566.31148 1130.60841 0.024574 1.3916E-05 -0.29685 -0.00016811 -0.27227 -0.00015419 566.311414264965 42.668 0.43042 46.355 46.118 46.548 3.6875 49 28 2 0 0 0 0.43982 1 8679 8679 5.7319 0.43497 1 54887 41027 11995 25916 25928 46964 46964 0.04832816880343671 SKHVEIKQY 9 Unmodified _SKHVEIKQY_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 566.3119506835938 2 566.31148 1130.60841 NaN NaN NaN NaN NaN NaN NaN 42.864 1 46.552 46.052 47.052 3.6875 0 0 0 0.3967 1 8757 8757 1.4819 0 1 41028 11995 25916 25928 46965 46965 0.04832816880343671 SKHVEIKQY 9 Unmodified _SKHVEIKQY_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.3109741210938 2 566.31148 1130.60841 0.11512 6.5196E-05 0.024245 1.373E-05 0.13937 7.8927E-05 566.3114009397303 43.058 0.4166 46.416 46.19 46.607 3.358 40 28 2 0 0 0 0.47493 2 8812 8812;8873 3.2813 0 1 71955 41029 11995 25916 25928 46966;46967 46966 0.04832816880343671 SKHVEIKQY 9 Unmodified _SKHVEIKQY_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 566.3114624023438 2 566.31148 1130.60841 NaN NaN NaN NaN NaN NaN NaN 43.065 1 46.307 45.807 46.807 3.2419 0 0 0 0.39036 1 8899 8899 2.9952 0.69251 1 41030 11995 25916 25928 46968 46968 0.04832816880343671 SKHVEIKQY 9 Unmodified _SKHVEIKQY_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 566.3121948242188 2 566.31148 1130.60841 NaN NaN NaN NaN NaN NaN NaN 43.117 1 46.359 45.859 46.859 3.2419 0 0 0 0.37891 1 8915 8915 5.7319 1.7875 1 41031 11995 25916 25928 46969 46969 0.04832816880343671 SKHVEIKQY 9 Unmodified _SKHVEIKQY_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|5|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 566.31148 1130.60841 0.11512 6.5196E-05 0.024245 1.373E-05 0.13937 7.8927E-05 566.3114009397303 43.058 0.4166 46.416 46.19 46.607 3.358 0.03013 0.00023729 NaN 5.7319 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 71955 41032 11995 25916 25928 0.04832816880343671 SKIGKKPRL 9 Unmodified _SKIGKKPRL_ 0 0 0 nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2 nc|ENSG00000163535|Q562F6-2|SGO2 nc|ENSG00000163535|Q562F6-2|SGO2 MSMS UPN48_class_I_Rep_1 5 513.8421630859375 2 513.842751 1025.67095 NaN NaN NaN NaN NaN NaN NaN 72.939 1 76.412 75.912 76.912 3.4732 0 0 0 0.38784 1 17154 17154 3.5965 0 1 41033 4016 25917 25929 46970 46970 0.15914007739161207 SKIIIFLVVN 10 Unmodified _SKIIIFLVVN_ 0 0 0 Cheshire_dup15|chr1:52440717-52441058:-|2.525913666611966|0.4191290044023091|2.59|151.0|1|1|sense Cheshire_dup15|chr1:52440717-52441058:-|2.525913666611966|0.4191290044023091|2.59|151.0|1|1|sense Cheshire_dup15|chr1:52440717-52441058:-|2.525913666611966|0.4191290044023091|2.59|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 573.3675537109375 2 573.368267 1144.72198 NaN NaN NaN NaN NaN NaN NaN 78.859 1 82.493 81.993 82.993 3.6331 0 0 0 0.53105 1 18716 18716 1.3295 0 1 41034 548 25918 25930 46971 46971 0.15540911993366535 SKIITTITFKT 11 Unmodified _SKIITTITFKT_ 0 0 0 L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|77|2|sense L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|77|2|sense L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|77|2|sense MSMS UPN47_class_I_Rep_3 4 626.8821411132812 2 626.879196 1251.74384 NaN NaN NaN NaN NaN NaN NaN 99.23 1 102.66 102.16 103.16 3.4328 0 0 0 0.38417 1 24545 24545 4.897 0 1 41035 8538 25919 25931 46972 46972 0.1280367195126928 SKIKHRRNL 9 Unmodified _SKIKHRRNL_ 0 0 0 L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|13|2|sense L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|13|2|sense L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 576.3605346679688 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 90.952 1 90.952 90.452 91.452 0 0 0 0 0.4007 1 21946 21946 0.52476 0 1 41036 12431 25920 25932 46973 46973 0.13538429230948168 SKIKHRRNL 9 Unmodified _SKIKHRRNL_ 0 0 0 L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|13|2|sense L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|13|2|sense L1ME1_dup6708|chr3:136494871-136495495:+|1.226639624095172|0.0182034090171055|6.07|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 576.3605346679688 2 576.359631 1150.70471 NaN NaN NaN NaN NaN NaN NaN 85.368 1 88.974 88.474 89.474 3.6059 0 0 0 0.4007 1 20416 20416 0.52476 0 1 41037 12431 25920 25932 46974 46974 0.13538429230948168 SKIKTPVW 8 Unmodified _SKIKTPVW_ 0 0 0 Charlie18a_dup778|chr5:79651357-79651545:-|1.0080747722661083|0.0965009223928539|3.38|151.0|6|3|sense Charlie18a_dup778|chr5:79651357-79651545:-|1.0080747722661083|0.0965009223928539|3.38|151.0|6|3|sense Charlie18a_dup778|chr5:79651357-79651545:-|1.0080747722661083|0.0965009223928539|3.38|151.0|6|3|sense MSMS UPN46_class_I_Rep_3 1 479.7745056152344 2 479.789653 957.564752 NaN NaN NaN NaN NaN NaN NaN 13.186 1 13.186 12.686 13.686 0 0 0 0 0.40643 1 318 318 2.0598 0 1 41038 456 25921 25933 46975 46975 0.08427252173839861 SKIRNLRMKKS 11 Unmodified _SKIRNLRMKKS_ 0 0 0 L1M6_dup4907|chr16:23938177-23938610:+|1.7441203720303888|0.0066600312641298|8.03|151.0|7|2|sense L1M6_dup4907|chr16:23938177-23938610:+|1.7441203720303888|0.0066600312641298|8.03|151.0|7|2|sense L1M6_dup4907|chr16:23938177-23938610:+|1.7441203720303888|0.0066600312641298|8.03|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 454.2798156738281 3 454.278367 1359.81327 NaN NaN NaN NaN NaN NaN NaN 41.052 1 44.724 44.224 45.224 3.6719 0 0 0 0.38417 1 8203 8203 0.50596 0.34663 1 41039 9219 25922 25934 46976 46976 0.14775852419029434 SKKAKKIKRF 10 Unmodified _SKKAKKIKRF_ 0 0 0 REV__Tigger2_dup2171|chr13:50051869-50053333:+|4.692127781523356|0.2043976207305958|4.52|151.0|12|1|sense REV__Tigger2_dup2171|chr13:50051869-50053333:+|4.692127781523356|0.2043976207305958|4.52|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 617.7112426757812 2 617.411332 1232.80811 NaN NaN NaN NaN NaN NaN NaN 119.15 1 119.15 118.65 119.65 0 0 0 0 0.53105 1 29603 29603 0.40072 0.093686 1 + 41040 32646 25923 25935 46977 46977 0.20101916618750693 SKKFFVKV 8 Unmodified _SKKFFVKV_ 0 0 0 REV__HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|22|3|sense REV__HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 492.26873779296875 2 491.807845 981.601138 NaN NaN NaN NaN NaN NaN NaN 64.898 1 68.254 67.754 68.754 3.3557 0 0 0 0.40746 1 15444 15444 0.69038 0 1 + 41041 23395 25924 25936 46978 46978 0.10960129070565472 SKKGLDFLL 9 Unmodified _SKKGLDFLL_ 0 0 0 LTR6B_dup70|chr8:8145205-8145756:+|1.2679782552458272|0.064556813767477|4.3|150.0|23|1|anti-sense;LTR6B_dup11|chr2:201126038-201126595:-|1.7120556395255435|0.2886480366016101|2.57|151.0|20|1|anti-sense LTR6B_dup70|chr8:8145205-8145756:+|1.2679782552458272|0.064556813767477|4.3|150.0|23|1|anti-sense LTR6B_dup70|chr8:8145205-8145756:+|1.2679782552458272|0.064556813767477|4.3|150.0|23|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.80718994140625 2 510.808042 1019.60153 0.36612 0.00018702 -0.13696 -6.996E-05 0.22916 0.00011706 510.8078475546205 59.092 0.74391 62.572 62.226 62.97 3.4801 78 46 2 0 0 0 0.47493 1 13060 13060 3.2813 0.28607 1 188990 41042 15699 25925 25937 46979 46979 0.09251503999746546 SKKGSHIR 8 Unmodified _SKKGSHIR_ 0 0 0 REV__ZNF667|p.H200N|1|0.08|ENSG00000198046|chr19:56442397-56442397|G/T|missense_variant REV__ZNF667|p.H200N|1|0.08|ENSG00000198046|chr19:56442397-56442397|G/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 456.7723388671875 2 456.772326 911.530098 0.11548 5.2747E-05 -0.075652 -3.4556E-05 0.039826 1.8191E-05 456.7721817131663 80.949 0.74101 84.437 84.097 84.838 3.4874 138 73 3 0 0 0 0.82752 1 20220 20220 4.3292 0 1 322230 + 41043 21109 25926 25938 46980 46980 0.07079429085740685 SKKHQGKIITN 11 Unmodified _SKKHQGKIITN_ 0 0 0 REV__L1MD1_dup4793|chr11:78412272-78412735:+|3.3613622929100706|0.0095036296890798|8.47|151.0|4|1|sense REV__L1MD1_dup4793|chr11:78412272-78412735:+|3.3613622929100706|0.0095036296890798|8.47|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 627.0223388671875 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 62.628 1 62.628 62.128 63.128 0 0 0 0 0.38417 1 14012 14012 2.4985 0 1 + 41044 27353 25927 25939 46981 46981 0.10891555100101868 SKKIPLLV 8 Unmodified _SKKIPLLV_ 0 0 0 REV__L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense REV__L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 449.3270568847656 2 449.310221 896.605889 NaN NaN NaN NaN NaN NaN NaN 108.28 1 111.92 111.42 112.42 3.6355 0 0 0 0.40738 1 26587 26587 0.79363 0 1 + 41045 28293 25928 25940 46982 46982 0.1534501321333437 SKKKARPQ 8 Unmodified _SKKKARPQ_ 0 0 0 REV__nc|ENSG00000171435|Q6VAB6-2|KSR2 REV__nc|ENSG00000171435|Q6VAB6-2|KSR2 MSMS UPN47_class_I_Rep_3 4 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 116.39 1 119.85 119.35 120.35 3.462 0 0 0 0.40625 1 28638 28638 2.3027 0 1 + 41046 22933 25929 25941 46983 46983 0.1039228863688777 SKKKARPQ 8 Unmodified _SKKKARPQ_ 0 0 0 REV__nc|ENSG00000171435|Q6VAB6-2|KSR2 REV__nc|ENSG00000171435|Q6VAB6-2|KSR2 MSMS UPN48_class_I_Rep_2 6 471.7953186035156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 116.66 1 120.32 119.82 120.82 3.6607 0 0 0 0.40746 1 27947 27947 0.69038 0 1 + 41047 22933 25929 25941 46984 46984 0.1039228863688777 SKKKARPQ 8 Unmodified _SKKKARPQ_ 0 0 0 REV__nc|ENSG00000171435|Q6VAB6-2|KSR2 REV__nc|ENSG00000171435|Q6VAB6-2|KSR2 MSMS UPN48_class_I_Rep_3 7 471.79486083984375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 112.97 1 116.63 116.13 117.13 3.6568 0 0 0 0.40625 1 26853 26853 2.3027 0 1 + 41048 22933 25929 25941 46985 46985 0.1039228863688777 SKKKFKNF 8 Unmodified _SKKKFKNF_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|96|2|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|96|2|sense MSMS UPN47_class_I_Rep_1 2 513.747802734375 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 68.862 1 72.228 71.728 72.728 3.3652 0 0 0 0.40604 1 16652 16652 2.5775 0 1 + 41049 29422 25930 25942 46986 46986 0.0904234343945518 SKKKKKKKA 9 Unmodified _SKKKKKKKA_ 0 0 0 L1ME4b_dup15286|chr12:101882566-101883181:+|1.1112800411118051|0.0086105037260287|7.01|151.0|45|3|anti-sense;L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|79|2|sense;L1PA6_dup2751|chr7:37153167-37159311:+|3.454159174407832|0.0393138219556515|6.46|151.0|141|3|sense;L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|151|3|sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.379638671875 2 537.3795 1072.74445 0.4593 0.00024682 0.25294 0.00013592 0.71224 0.00038274 537.3794900746797 108.2 0.41965 111.87 111.72 112.14 3.6746 172 47 4 0 0 0 0.50088 1 25703 25703 0.52476 0 1 39816000 41050 27622 25931 25943 46987 46987 0.2109855618164147 SKKKKKKKA 9 Unmodified _SKKKKKKKA_ 0 0 0 L1ME4b_dup15286|chr12:101882566-101883181:+|1.1112800411118051|0.0086105037260287|7.01|151.0|45|3|anti-sense;L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|79|2|sense;L1PA6_dup2751|chr7:37153167-37159311:+|3.454159174407832|0.0393138219556515|6.46|151.0|141|3|sense;L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|151|3|sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.3796997070312 2 537.3795 1072.74445 0.57103 0.00030686 0.10427 5.603E-05 0.6753 0.00036289 537.3794306312517 108.17 0.22745 111.85 111.67 111.89 3.6813 40 20 4 0 0 0 0.50088 1 25550 25550 0.52476 0 1 35673000 41051 27622 25931 25943 46988 46988 0.2109855618164147 SKKKKKKQQTE 11 Unmodified _SKKKKKKQQTE_ 0 0 0 REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|4|1|sense REV__L1PA16_dup4356|chr5:34145156-34147836:+|2.443770132738406|0.0505660509190655|5.59|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 454.27972412109375 3 454.280542 1359.8198 NaN NaN NaN NaN NaN NaN NaN 40.132 1 43.799 43.299 44.299 3.6668 0 0 0 0.38417 1 7925 7925 1.0136 0.50762 1 + 41052 29377 25932 25944 46989 46989 0.1542806885142909 SKKKKKRKKG 10 Unmodified _SKKKKKRKKG_ 0 0 0 AluSg_dup35900|chr22:17756564-17756872:-|1.0609210519407632|0.024890369216511|5.41|151.0|9|2|sense AluSg_dup35900|chr22:17756564-17756872:-|1.0609210519407632|0.024890369216511|5.41|151.0|9|2|sense AluSg_dup35900|chr22:17756564-17756872:-|1.0609210519407632|0.024890369216511|5.41|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 608.3256225585938 2 608.422231 1214.82991 NaN NaN NaN NaN NaN NaN NaN 56.94 1 56.94 56.44 57.44 0 0 0 0 0.53105 1 12449 12449 0 0 1 41053 218 25933 25945 46990 46990 0.23108721367270846 SKKKLGYRH 9 Unmodified _SKKKLGYRH_ 0 0 0 MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|55|1|anti-sense MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|55|1|anti-sense MSTA-int_dup1079|chr5:143384311-143385926:-|1.9694455835620448|0.0373158140545775|5.72|150.0|55|1|anti-sense MSMS UPN48_class_I_Rep_1 5 559.2921142578125 2 558.835457 1115.65636 NaN NaN NaN NaN NaN NaN NaN 30.241 1 33.783 33.283 34.283 3.542 0 0 0 0.4007 1 4315 4315 0.52476 0 1 41054 16537 25934 25946 46991 46991 0.10315935591029302 SKKKRKKIQIT 11 Unmodified _SKKKRKKIQIT_ 0 0 0 L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 453.30609130859375 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 113.05 1 113.05 112.55 113.55 0 0 0 0 0.38417 1 27919 27919 0.094841 0 1 41055 11048 25935 25947 46992 46992 0.22873242364698854 SKKKRKKIQIT 11 Unmodified _SKKKRKKIQIT_ 0 0 0 L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 453.3059997558594 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 111.4 1 114.98 114.48 115.48 3.572 0 0 0 0.38417 1 27481 27481 0.094841 0 1 41056 11048 25935 25947 46993 46993 0.22873242364698854 SKKKRKKIQIT 11 Unmodified _SKKKRKKIQIT_ 0 0 0 L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense L1MC_dup1414|chr3:50020225-50020577:-|1.0287353358155475|0.0054509521270958|7.56|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 453.3052062988281 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 118.54 1 122.2 121.7 122.7 3.6627 0 0 0 0.38417 1 28425 28425 0.094841 0 1 41057 11048 25935 25947 46994 46994 0.22873242364698854 SKKLNANR 8 Unmodified _SKKLNANR_ 0 0 0 REV__L1PA16_dup10910|chr12:93491626-93492512:-|1.1288299223814038|0.2938197343790219|1.94|151.0|12|2|sense REV__L1PA16_dup10910|chr12:93491626-93492512:-|1.1288299223814038|0.2938197343790219|1.94|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 465.7773132324219 2 465.777608 929.540663 0.0059894 2.7897E-06 -0.20331 -9.4697E-05 -0.19732 -9.1907E-05 465.7774230902794 73.041 1.6981 76.338 75.542 77.24 3.2971 202 148 2 0 0 0 0.82752 1 17869 17869 2.3027 0 1 165930 + 41058 29319 25936 25948 46995 46995 0.07307411740168845 SKKNKNKQ 8 Unmodified _SKKNKNKQ_ 0 0 0 L1PA2_dup4187|chr13:95730294-95731675:-|1.4447252093070386|0.021891798532977|6.04|150.0|41|3|sense L1PA2_dup4187|chr13:95730294-95731675:-|1.4447252093070386|0.021891798532977|6.04|150.0|41|3|sense L1PA2_dup4187|chr13:95730294-95731675:-|1.4447252093070386|0.021891798532977|6.04|150.0|41|3|sense MSMS UPN47_class_I_Rep_2 3 487.79107666015625 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 73.005 1 76.302 75.802 76.802 3.2971 0 0 0 0.40746 1 17926 17926 0.69038 0 1 41059 14208 25937 25949 46996 46996 0.0790368091164737 SKKNVQEI 8 Unmodified _SKKNVQEI_ 0 0 0 REV__L1MEf_dup9636|chr15:30933020-30933748:-|1.5481139160796735|0.1514609363368273|3.35|151.0|2|1|sense REV__L1MEf_dup9636|chr15:30933020-30933748:-|1.5481139160796735|0.1514609363368273|3.35|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 473.27020263671875 2 473.271824 944.529095 NaN NaN NaN NaN NaN NaN NaN 39.895 1 43.636 43.136 44.136 3.7413 0 0 0 0.39436 1 7128 7128 10.074 0 1 + 41060 28702 25938 25950 46997 46997 0.054611699261727153 SKKPIRYVEKL 11 Unmodified _SKKPIRYVEKL_ 0 0 0 REV__ENSG00000181555|ENST00000409792|SETD2 REV__ENSG00000181555|ENST00000409792|SETD2 MSMS UPN47_class_I_Rep_2 3 454.2796630859375 3 454.281883 1359.82382 NaN NaN NaN NaN NaN NaN NaN 40.59 1 43.961 43.461 44.461 3.3712 0 0 0 0.38417 1 8098 8098 1.2148 0.51716 1 + 41061 20736 25939 25951 46998 46998 0.158301583451248 SKKQINTTW 9 Unmodified _SKKQINTTW_ 0 0 0 REV__L1PA11_dup101|chr1:93220621-93221448:-|1.1685258399666305|0.284535592050406|2.04|151.0|16|3|sense REV__L1PA11_dup101|chr1:93220621-93221448:-|1.1685258399666305|0.284535592050406|2.04|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 553.3038330078125 2 553.303655 1104.59276 NaN NaN NaN NaN NaN NaN NaN 89.231 1 89.231 88.731 89.731 0 0 0 0 0.38784 1 21461 21461 3.5965 0 1 + 41062 28996 25940 25952 46999 46999 0.04464530363270569 SKKRKAPP 8 Unmodified _SKKRKAPP_ 0 0 0 REV__nc|ENSG00000111641|P46087-2|NOP2 REV__nc|ENSG00000111641|P46087-2|NOP2 MULTI-MSMS UPN48_class_I_Rep_2 6 456.3009033203125 2 456.292894 910.571235 0.080563 3.676E-05 -0.62315 -0.00028434 -0.54259 -0.00024758 456.2925210045607 45.673 0.46347 49.431 49.269 49.732 3.7579 52 34 2 0 0 0 0.82752 2 8819 8819;8857 7.9102 0 1 61304 + 41063 18459 25941 25953 47000;47001 47000 0.11237190125211782 SKKRKAPP 8 Unmodified _SKKRKAPP_ 0 0 0 REV__nc|ENSG00000111641|P46087-2|NOP2 REV__nc|ENSG00000111641|P46087-2|NOP2 MULTI-MSMS UPN48_class_I_Rep_3 7 456.30096435546875 2 456.292894 910.571235 0.097793 4.4622E-05 -0.73196 -0.00033399 -0.63417 -0.00028937 456.29253895709076 45.885 0.40821 49.522 49.266 49.675 3.6369 47 30 2 0 0 0 0.82752 1 8854 8854 4.756 0 1 54527 + 41064 18459 25941 25953 47002 47002 0.11237190125211782 SKKRLLTH 8 Unmodified _SKKRLLTH_ 0 0 0 REV__L1ME4c_dup7584|chr16:81491785-81492335:-|1.0319174586842903|0.0237239393404417|5.44|150.0|4|1|sense REV__L1ME4c_dup7584|chr16:81491785-81492335:-|1.0319174586842903|0.0237239393404417|5.44|150.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 491.8101501464844 2 491.811451 981.608348 NaN NaN NaN NaN NaN NaN NaN 111.59 1 115.11 114.61 115.61 3.5207 0 0 0 0.40746 1 27394 27394 0.69038 0 1 + 41065 28324 25942 25954 47003 47003 0.11680861670970444 SKKVNVYLSI 10 Unmodified _SKKVNVYLSI_ 0 0 0 REV__L1ME4b_dup4520|chr3:141493677-141494410:-|1.690945904817797|0.0361105840962493|5.55|151.0|16|2|sense REV__L1ME4b_dup4520|chr3:141493677-141494410:-|1.690945904817797|0.0361105840962493|5.55|151.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 575.8429565429688 2 575.845156 1149.67576 NaN NaN NaN NaN NaN NaN NaN 84.101 1 87.794 87.294 88.294 3.6937 0 0 0 0.53105 1 20011 20011 1.1933 0 1 + 41066 28299 25943 25955 47004 47004 0.10690847091291289 SKKYKVFVPVG 11 Unmodified _SKKYKVFVPVG_ 0 0 0 Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|71|1|anti-sense Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|71|1|anti-sense Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_2 6 417.92205810546875 3 417.920174 1250.73869 NaN NaN NaN NaN NaN NaN NaN 97.903 1 101.68 101.18 102.18 3.779 0 0 0 0.38417 1 23258 23258 2.6312 0.19645 1 41067 33267 25944 25956 47005 47005 0.123354128793153 SKLERSVYA 9 Unmodified _SKLERSVYA_ 0 0 0 ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MSMS UPN46_class_I_Rep_3 1 526.8219604492188 2 526.790381 1051.56621 0.31926 0.00016818 2.0048 0.0010561 2.3241 0.0012243 527.2932550194213 41.14 0.10668 41.14 41.121 41.228 0 10 7 2 0 0 0 0.43982 1 8047 8047 5.7319 0 1 86614 41068 5799 25945 25957 47006 47006 0.04248841471940068 SKLERSVYA 9 Unmodified _SKLERSVYA_ 0 0 0 ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 526.790381 1051.56621 -0.091804 -4.8362E-05 7.0038 0.0036895 6.912 0.0036412 526.7939481012605 37.772 0.72249 41.438 41.136 41.859 3.6652 -0.048387 3.3641E-05 NaN 5.7319 107 54 3 NaN NaN NaN NaN 0 NaN NaN 0 144120 41069 5799 25945 25957 0.04248841471940068 SKLERSVYA 9 Unmodified _SKLERSVYA_ 0 0 0 ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 526.790381 1051.56621 -0.2666 -0.00014044 7.0088 0.0036922 6.7422 0.0035517 526.7939859973296 38.274 0.76118 41.661 41.34 42.102 3.3879 0.17534 3.8857E-05 NaN 5.7319 108 62 2 NaN NaN NaN NaN 0 NaN NaN 0 144550 41070 5799 25945 25957 0.04248841471940068 SKLERSVYA 9 Unmodified _SKLERSVYA_ 0 0 0 ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 526.790381 1051.56621 -0.14149 -7.4534E-05 6.9172 0.0036439 6.7757 0.0035694 526.7940682328617 38.464 0.90458 41.705 41.373 42.277 3.2414 0.21897 -5.7599E-05 NaN 5.7319 101 66 2 NaN NaN NaN NaN 0 NaN NaN 0 84156 41071 5799 25945 25957 0.04248841471940068 SKLIASIYLLM 11 Unmodified _SKLIASIYLLM_ 0 0 0 Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|114|2|anti-sense Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|114|2|anti-sense Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|114|2|anti-sense MSMS UPN47_class_I_Rep_3 4 626.3890380859375 2 626.372692 1250.73083 NaN NaN NaN NaN NaN NaN NaN 105.58 1 109.11 108.61 109.61 3.5308 0 0 0 0.38417 1 25845 25845 4.897 1.3005 1 41072 545 25946 25958 47007 47007 0.115495175675278 SKLIPINLIDK 11 Unmodified _SKLIPINLIDK_ 0 0 0 L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|14|1|sense L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|14|1|sense L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 627.38232421875 2 627.395013 1252.77547 NaN NaN NaN NaN NaN NaN NaN 104.88 1 108.5 108 109 3.6247 0 0 0 0.38417 1 25270 25270 2.4985 0 1 41073 13323 25947 25959 47008 47008 0.1591966470521129 SKLIRTIR 8 Unmodified _SKLIRTIR_ 0 0 0 REV__ENSG00000060491|ENST00000290291|OGFR REV__ENSG00000060491|ENST00000290291|OGFR MSMS UPN48_class_I_Rep_1 5 493.8160400390625 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 64.781 1 68.235 67.735 68.735 3.4541 0 0 0 0.40659 1 14692 14692 1.8442 0 1 + 41074 17721 25948 25960 47009 47009 0.14625434705078533 SKLIWGKFLF 10 Unmodified _SKLIWGKFLF_ 0 0 0 REV__HAL1_dup1691|chr1:229338576-229339742:+|2.3201265020520863|0.1056732060767469|4.46|151.0|76|3|anti-sense REV__HAL1_dup1691|chr1:229338576-229339742:+|2.3201265020520863|0.1056732060767469|4.46|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8695678710938 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 86.26 1 89.978 89.478 90.478 3.7171 0 0 0 0.53105 1 20540 20540 1.6526 0.17072 1 + 41075 23371 25949 25961 47010 47010 0.11296331713197105 SKLKRAIP 8 Unmodified _SKLKRAIP_ 0 0 0 REV__L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|124|3|sense REV__L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|124|3|sense MSMS UPN48_class_I_Rep_1 5 456.804931640625 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 114.69 1 118.32 117.82 118.82 3.6301 0 0 0 0.40746 1 27882 27882 0.69038 0 1 + 41076 29844 25950 25962 47011 47011 0.1323036078503037 SKLLCKKLPSV 11 Unmodified _SKLLCKKLPSV_ 0 0 0 REV__L1MB7_dup18811|chr16:12668488-12669499:+|1.2411167367909557|0.0539465565820734|4.52|151.0|60|2|anti-sense REV__L1MB7_dup18811|chr16:12668488-12669499:+|1.2411167367909557|0.0539465565820734|4.52|151.0|60|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 608.3778076171875 2 608.378309 1214.74206 0.63485 0.00038623 -2.6561 -0.0016159 -2.0213 -0.0012297 608.3775983016002 107.8 0.08342 111.33 111.29 111.37 3.5345 13 9 3 0 0 0 0.59712 1 26099 26099 5.2969 0 1 4040700 + 41077 26188 25951 25963 47012 47012 0.14328339661665268 SKLLLYPWA 9 Unmodified _SKLLLYPWA_ 0 0 0 Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|89|1|anti-sense Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|89|1|anti-sense Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|89|1|anti-sense MSMS UPN48_class_I_Rep_3 7 545.8179931640625 2 545.81841 1089.62227 NaN NaN NaN NaN NaN NaN NaN 23.205 1 26.956 26.456 27.456 3.7507 0 0 0 0.40038 1 2501 2501 0.6015 0 1 41078 33158 25952 25964 47013 47013 0.08104094379405069 SKLLQGQKSKH 11 Unmodified _SKLLQGQKSKH_ 0 0 0 L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense L1PA5_dup6336|chr9:83861198-83865082:-|1.5029406021658085|0.1132853432272105|3.73|151.0|109|3|sense MSMS UPN47_class_I_Rep_3 4 627.3678588867188 2 627.369861 1252.72517 NaN NaN NaN NaN NaN NaN NaN 60.738 1 63.903 63.403 64.403 3.1651 0 0 0 0.38417 1 14281 14281 2.4985 0.65425 1 41079 14505 25953 25965 47014 47014 0.10891555100079131 SKLRGLKPK 9 Unmodified _SKLRGLKPK_ 0 0 0 ENSG00000204843|ENST00000628224|DCTN1 ENSG00000204843|ENST00000628224|DCTN1 ENSG00000204843|ENST00000628224|DCTN1 MSMS UPN48_class_I_Rep_2 6 513.8417358398438 2 513.842751 1025.67095 NaN NaN NaN NaN NaN NaN NaN 72.367 1 75.931 75.431 76.431 3.5645 0 0 0 0.39518 1 16931 16931 1.8442 0 1 41080 5539 25954 25966 47015 47015 0.15914007739161207 SKLRGLKPK 9 Unmodified _SKLRGLKPK_ 0 0 0 ENSG00000204843|ENST00000628224|DCTN1 ENSG00000204843|ENST00000628224|DCTN1 ENSG00000204843|ENST00000628224|DCTN1 MSMS UPN48_class_I_Rep_3 7 513.8417358398438 2 513.842751 1025.67095 NaN NaN NaN NaN NaN NaN NaN 72.592 1 76.129 75.629 76.629 3.5373 0 0 0 0.39518 1 16930 16930 1.8442 0 1 41081 5539 25954 25966 47016 47016 0.15914007739161207 SKLVTGIILA 10 Unmodified _SKLVTGIILA_ 0 0 0 ENST00000511220.1_1_5:92603163-92603583:+|nuORF ENST00000511220.1_1_5:92603163-92603583:+|nuORF ENST00000511220.1_1_5:92603163-92603583:+|nuORF MSMS UPN47_class_I_Rep_3 4 507.8188781738281 2 507.831517 1013.64848 NaN NaN NaN NaN NaN NaN NaN 63.308 1 66.478 65.978 66.978 3.1698 0 0 0 0.53105 1 15069 15069 7.2892 0 1 41082 7187 25955 25967 47017 47017 0.1422036355089631 SKLWAPHR 8 Unmodified _SKLWAPHR_ 0 0 0 REV__L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|4|1|sense REV__L1MA4A_dup2525|chr6:156211177-156214460:-|3.504842935438464|0.0070230665421434|8.96|150.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 498.18084716796875 2 497.782693 993.550834 NaN NaN NaN NaN NaN NaN NaN 39.265 1 42.921 42.421 43.421 3.6557 0 0 0 0.40746 1 6846 6846 0.69038 0 1 + 41083 25252 25956 25968 47018 47018 0.05380019465405894 SKMFPKLT 8 Unmodified _SKMFPKLT_ 0 0 0 nc|ENSG00000184647|Q6UWB4-2|PRSS55;ENSG00000184647|ENST00000328655|PRSS55 nc|ENSG00000184647|Q6UWB4-2|PRSS55 nc|ENSG00000184647|Q6UWB4-2|PRSS55 MULTI-MSMS UPN47_class_I_Rep_1 2 476.2702941894531 2 476.270238 950.525924 0.089637 4.2692E-05 -0.26694 -0.00012714 -0.17731 -8.4446E-05 476.2700641446671 65.586 0.65889 68.941 68.604 69.263 3.3557 55 35 2 0 0 0 0.82752 1 15576 15576 4.3292 0 1 131770 41084 5062 25957 25969 47019 47019 0.048682035478236685 SKMISLSECM 10 Unmodified _SKMISLSECM_ 0 0 0 ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6 ENSG00000230301|ENST00000615035|OR5H6 ENSG00000230301|ENST00000615035|OR5H6 MSMS UPN47_class_I_Rep_1 2 564.760986328125 2 564.75852 1127.50249 NaN NaN NaN NaN NaN NaN NaN 20.467 1 24.11 23.61 24.61 3.6436 0 0 0 0.53105 1 2061 2061 1.6526 0.45928 1 41085 5675 25958 25970 47020 47020 -0.056163463433222205 SKNLPNKLI 9 Unmodified _SKNLPNKLI_ 0 0 0 REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|4|1|sense REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.819091796875 2 513.818941 1025.62333 0.35417 0.00018198 0.42423 0.00021798 0.7784 0.00039996 513.8189743098745 57.932 0.24345 61.419 61.338 61.582 3.487 21 15 2 0 0 0 0.47493 1 12602 12602 3.2813 0 1 81841 + 41086 27957 25959 25971 47021 47021 0.11154308748336916 SKPDILTR 8 Unmodified _SKPDILTR_ 0 0 0 nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783 nc|ENSG00000204946|Q6ZMS7-1|ZNF783 nc|ENSG00000204946|Q6ZMS7-1|ZNF783 MULTI-MSMS UPN48_class_I_Rep_2 6 465.2740173339844 2 465.274367 928.53418 0.12897 6.0005E-05 -0.50516 -0.00023504 -0.37619 -0.00017503 465.2740786154163 42.076 0.5564 45.834 45.496 46.052 3.7579 71 56 2 0 0 0 0.82752 1 7696 7696 13.906 0 1 108210 41087 5544 25960 25972 47022 47022 0.06705473788804284 SKPDILTR 8 Unmodified _SKPDILTR_ 0 0 0 nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783 nc|ENSG00000204946|Q6ZMS7-1|ZNF783 nc|ENSG00000204946|Q6ZMS7-1|ZNF783 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 465.274367 928.53418 0.10909 5.0758E-05 -0.32201 -0.00014982 -0.21291 -9.9063E-05 465.2741749589429 42.174 0.56807 45.816 45.542 46.11 3.6415 -0.0088993 0.00010117 NaN 13.906 84 52 2 NaN NaN NaN NaN 0 NaN NaN 0 113670 41088 5544 25960 25972 0.06705473788804284 SKPFGKHIL 9 Unmodified _SKPFGKHIL_ 0 0 0 REV__MER21C_dup5432|chr22:40517607-40518488:+|2.39283964292188|0.0259781497274451|6.53|151.0|67|3|anti-sense REV__MER21C_dup5432|chr22:40517607-40518488:+|2.39283964292188|0.0259781497274451|6.53|151.0|67|3|anti-sense MSMS UPN47_class_I_Rep_3 4 513.805908203125 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 88.531 1 91.924 91.424 92.424 3.3931 0 0 0 0.39326 1 22204 22204 2.3027 0.24298 1 + 41089 31247 25961 25973 47023 47023 0.09042343439477918 SKPFKVMM 8 Unmodified _SKPFKVMM_ 0 0 0 ENSG00000214943|ENST00000399285|GPR33 ENSG00000214943|ENST00000399285|GPR33 ENSG00000214943|ENST00000399285|GPR33 MSMS UPN47_class_I_Rep_2 3 484.2580871582031 2 484.258816 966.50308 NaN NaN NaN NaN NaN NaN NaN 19.822 1 23.219 22.719 23.719 3.3963 0 0 0 0.40738 1 1943 1943 0.79363 0 1 41090 5626 25962 25974 47024 47024 0.018488611587144987 SKPHARFG 8 Unmodified _SKPHARFG_ 0 0 0 REV__MLT1C_dup10559|chrX:2642211-2642604:-|1.1357699653157147|0.0384448490099895|4.88|151.0|15|1|anti-sense REV__MLT1C_dup10559|chrX:2642211-2642604:-|1.1357699653157147|0.0384448490099895|4.88|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 450.2462158203125 2 450.245944 898.477334 NaN NaN NaN NaN NaN NaN NaN 68.009 1 71.373 70.873 71.873 3.3646 0 0 0 0.40746 1 16390 16390 0.69038 0 1 + 41091 31627 25963 25975 47025 47025 0.02403471022944359 SKPRKGPIKR 10 Unmodified _SKPRKGPIKR_ 0 0 0 HAL1_dup18154|chr14:31007024-31007495:+|1.6488647748167424|0.0045167175701764|8.51|150.0|2|1|sense HAL1_dup18154|chr14:31007024-31007495:+|1.6488647748167424|0.0045167175701764|8.51|150.0|2|1|sense HAL1_dup18154|chr14:31007024-31007495:+|1.6488647748167424|0.0045167175701764|8.51|150.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 583.879150390625 2 583.877656 1165.74076 NaN NaN NaN NaN NaN NaN NaN 40.945 1 44.617 44.117 45.117 3.6719 0 0 0 0.53105 1 8172 8172 1.3295 0 1 41092 7835 25964 25976 47026 47026 0.16451886407799066 SKPYSYMEI 9 Unmodified _SKPYSYMEI_ 0 0 0 L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|12|1|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|12|1|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.2650146484375 2 559.26535 1116.51615 0.46634 0.00026081 0.032477 1.8163E-05 0.49882 0.00027897 559.265028245281 79.153 0.66335 82.448 81.941 82.604 3.295 88 62 3 0 0 0 0.36392 1 19759 19759 10.074 0 1 119990 41093 13868 25965 25977 47027 47027 -0.037450292482162695 SKQEKIWLLG 10 Unmodified _SKQEKIWLLG_ 0 0 0 ENST00000422744.2_1_10:96902449-96904134:-|nuORF ENST00000422744.2_1_10:96902449-96904134:-|nuORF ENST00000422744.2_1_10:96902449-96904134:-|nuORF MSMS UPN47_class_I_Rep_3 4 601.3519287109375 2 601.350606 1200.68666 NaN NaN NaN NaN NaN NaN NaN 81.142 1 84.465 83.965 84.965 3.3231 0 0 0 0.53105 1 20301 20301 1.8442 0.19162 1 41094 6688 25966 25978 47028 47028 0.09434249465539324 SKQIRYDLVK 10 Unmodified _SKQIRYDLVK_ 0 0 0 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 MULTI-MSMS UPN48_class_I_Rep_1 5 625.3654174804688 2 625.366787 1248.71902 0.42729 0.00026722 -0.63791 -0.00039893 -0.21061 -0.00013171 625.3666584784294 98.694 0.43051 102.3 101.99 102.42 3.6065 92 61 2 0 0 0 0.54822 1 23837 23837 5.7319 0 1 2158100 41095 590 25967 25979 47029 47029 0.10461036868537121 SKQIRYDLVK 10 Unmodified _SKQIRYDLVK_ 0 0 0 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 MULTI-MSMS UPN48_class_I_Rep_2 6 625.3650512695312 2 625.366787 1248.71902 0.49453 0.00030926 -0.75494 -0.00047212 -0.26042 -0.00016286 625.3661316892125 91.264 0.72783 95.02 94.702 95.43 3.7554 217 107 3 0 0 0 0.54822 1 21684 21684 5.7319 0 1 12925000 41096 590 25967 25979 47030 47030 0.10461036868537121 SKQIRYDLVK 10 Unmodified _SKQIRYDLVK_ 0 0 0 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 MULTI-MSMS UPN48_class_I_Rep_2 6 625.3659057617188 2 625.366787 1248.71902 0.49435 0.00030915 -0.68667 -0.00042942 -0.19232 -0.00012027 625.3664105094967 98.376 0.58704 102.15 101.95 102.54 3.7707 152 83 2 0 0 0 0.54822 1 23400 23400 5.7319 0 1 3129300 41097 590 25967 25979 47031 47031 0.10461036868537121 SKQIRYDLVK 10 Unmodified _SKQIRYDLVK_ 0 0 0 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 chr16:30245853-30251976|67|12.19|0.55|4.47|-|1|NPIPB13,NPIPB13|1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 625.366787 1248.71902 0.68195 0.00042647 0.44493 0.00027825 1.1269 0.00070472 625.8683658637804 95.147 0.046867 95.147 95.111 95.157 0 0.052828 0.0010946 NaN 5.7319 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 60642 41098 590 25967 25979 0.10461036868537121 SKQKERKP 8 Unmodified _SKQKERKP_ 0 0 0 ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB ENSG00000134962|ENST00000257408|KLB MULTI-MSMS UPN47_class_I_Rep_1 2 500.798583984375 2 500.79854 999.582528 0.25089 0.00012564 -0.49739 -0.00024909 -0.2465 -0.00012345 500.79815331144584 85.429 0.52788 89.02 88.783 89.311 3.5914 100 71 2 0 0 0 0.82752 1 21373 21373 2.0598 0 1 159740 41099 2877 25968 25980 47032 47032 0.08271967428697735 SKQKIEKTV 9 Unmodified _SKQKIEKTV_ 0 0 0 REV__L1MB4_dup6511|chr13:19978715-19979335:-|2.2360847514217044|0.0134369040886241|7.38|151.0|13|2|sense REV__L1MB4_dup6511|chr13:19978715-19979335:-|2.2360847514217044|0.0134369040886241|7.38|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8213500976562 2 530.821681 1059.62881 0.39781 0.00021117 -0.32477 -0.0001724 0.073036 3.8769E-05 530.8214876873047 73.946 0.83899 77.182 76.623 77.462 3.2363 113 85 2 0 0 0 0.47763 1 18333 18333 2.9952 0 1 157860 + 41100 26002 25969 25981 47033 47033 0.10137987540110771 SKQKIEKTV 9 Unmodified _SKQKIEKTV_ 0 0 0 REV__L1MB4_dup6511|chr13:19978715-19979335:-|2.2360847514217044|0.0134369040886241|7.38|151.0|13|2|sense REV__L1MB4_dup6511|chr13:19978715-19979335:-|2.2360847514217044|0.0134369040886241|7.38|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8206787109375 2 530.821681 1059.62881 0.39868 0.00021163 -0.22835 -0.00012121 0.17033 9.0415E-05 530.821610715683 74.274 0.31822 77.511 77.462 77.78 3.2363 38 31 2 0 0 0 0.49187 1 18442 18442 1.4819 0 1 76150 + 41101 26002 25969 25981 47034 47034 0.10137987540110771 SKQKIEKTV 9 Unmodified _SKQKIEKTV_ 0 0 0 REV__L1MB4_dup6511|chr13:19978715-19979335:-|2.2360847514217044|0.0134369040886241|7.38|151.0|13|2|sense REV__L1MB4_dup6511|chr13:19978715-19979335:-|2.2360847514217044|0.0134369040886241|7.38|151.0|13|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 530.821681 1059.62881 0.3431 0.00018213 -0.13406 -7.1164E-05 0.20904 0.00011096 530.8216628580847 73.63 0.37657 77.016 76.753 77.129 3.3861 -0.06015 0.00010219 NaN 2.9952 53 35 2 NaN NaN NaN NaN 0 NaN NaN 0 137680 + 41102 26002 25969 25981 0.10137987540110771 SKQNIQMAKK 10 Unmodified _SKQNIQMAKK_ 0 0 0 L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|39|3|sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|39|3|sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 588.331787109375 2 588.33189 1174.64923 NaN NaN NaN NaN NaN NaN NaN 49.044 1 49.044 48.544 49.544 0 0 0 0 0.53105 1 10268 10268 1.1933 0 1 41103 10597 25970 25982 47035 47035 0.0688883492828154 SKQVLKRH 8 Unmodified _SKQVLKRH_ 0 0 0 L1M5_dup25655|chr8:19840091-19840705:+|1.0827469776191532|0.3179244347095894|1.77|151.0|7|1|sense L1M5_dup25655|chr8:19840091-19840705:+|1.0827469776191532|0.3179244347095894|1.77|151.0|7|1|sense L1M5_dup25655|chr8:19840091-19840705:+|1.0827469776191532|0.3179244347095894|1.77|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 498.3402404785156 2 498.309075 994.603597 NaN NaN NaN NaN NaN NaN NaN 39.383 1 39.383 38.883 39.883 0 0 0 0 0.39819 1 7564 7564 8.5933 0 1 41104 9131 25971 25983 47036 47036 0.1060797752822964 SKRERIFHKLQ 11 Unmodified _SKRERIFHKLQ_ 0 0 0 Charlie18a_dup1835|chr13:21444364-21444519:+|1.3072495843094871|0.0088829922660727|7.2|151.0|1|1|sense Charlie18a_dup1835|chr13:21444364-21444519:+|1.3072495843094871|0.0088829922660727|7.2|151.0|1|1|sense Charlie18a_dup1835|chr13:21444364-21444519:+|1.3072495843094871|0.0088829922660727|7.2|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 481.3371276855469 3 481.284398 1440.83137 0.2292 0.00011031 -1.9165 -0.00092239 -1.6873 -0.00081208 481.2834561246184 93.366 0.14306 97.257 97.162 97.305 3.8914 29 17 2 0 0 0 22.551 1 22118 22118 0.50596 0 1 154500 41105 455 25972 25984 47037 47037 0.12858310665387762 SKRIKSKQSR 10 Unmodified _SKRIKSKQSR_ 0 0 0 REV__MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|18|1|anti-sense REV__MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 406.58453369140625 3 406.586077 1216.7364 NaN NaN NaN NaN NaN NaN NaN 103.92 1 107.44 106.94 107.94 3.5205 0 0 0 0.53105 1 25491 25491 0.62683 0 1 + 41106 31646 25973 25985 47038 47038 0.13670377194216599 SKRIKSKQSR 10 Unmodified _SKRIKSKQSR_ 0 0 0 REV__MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|18|1|anti-sense REV__MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 406.5838928222656 3 406.586077 1216.7364 NaN NaN NaN NaN NaN NaN NaN 104.76 1 108.3 107.8 108.8 3.5308 0 0 0 0.53105 1 25672 25672 0.62683 0 1 + 41107 31646 25973 25985 47039 47039 0.13670377194216599 SKRKKKED 8 Unmodified _SKRKKKED_ 0 0 0 REV__nc|ENSG00000111912|Q8NI08-6|NCOA7 REV__nc|ENSG00000111912|Q8NI08-6|NCOA7 MULTI-MSMS UPN48_class_I_Rep_1 5 509.8041687011719 2 509.803823 1017.59309 0.25563 0.00013032 -0.1184 -6.0363E-05 0.13722 6.9956E-05 509.80363817807785 77.874 0.46127 81.396 81.344 81.806 3.5221 67 52 2 0 0 0 0.82752 1 18639 18639 0.69038 0 1 134510 + 41108 18470 25974 25986 47040 47040 0.08499950083125896 SKRKPKLM 8 Unmodified _SKRKPKLM_ 0 0 0 L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|40|2|anti-sense L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|40|2|anti-sense L1MC4_dup201|chr1:21759458-21760294:+|1.1528932432385692|0.014977266563745|6.27|150.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 494.31103515625 2 494.310229 986.605906 NaN NaN NaN NaN NaN NaN NaN 69.728 1 73.004 72.504 73.504 3.2761 0 0 0 0.40746 1 16949 16949 0.69038 0 1 41109 11440 25975 25987 47041 47041 0.11206689941673176 SKRKRLDPYL 10 Unmodified _SKRKRLDPYL_ 0 0 0 L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|2|1|sense L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|2|1|sense L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 638.381103515625 2 638.380229 1274.7459 0.44105 0.00028156 -0.24618 -0.00015716 0.19488 0.0001244 638.3800478661917 44.478 0.60807 47.991 47.643 48.251 3.5132 72 42 2 0 0 0 0.56486 1 8376 8376 0.40072 0.050084 1 132430 41110 10235 25976 25988 47042 47042 0.1195214547976775 SKRLFPWV 8 Unmodified _SKRLFPWV_ 0 0 0 REV__L1MB7_dup13027|chrX:136722074-136723339:+|7.141492607662465|0.0470406142057928|7.25|151.0|30|2|sense REV__L1MB7_dup13027|chrX:136722074-136723339:+|7.141492607662465|0.0470406142057928|7.25|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 516.8056640625 2 516.803094 1031.59164 NaN NaN NaN NaN NaN NaN NaN 87.637 1 91.084 90.584 91.584 3.4471 0 0 0 0.40738 1 21784 21784 0.79363 0 1 + 41111 26135 25977 25989 47043 47043 0.07710360785040393 SKRQEQCCYL 10 Unmodified _SKRQEQCCYL_ 0 0 0 ENST00000524795.5_1_15:66587446-66615029:+|nuORF ENST00000524795.5_1_15:66587446-66615029:+|nuORF ENST00000524795.5_1_15:66587446-66615029:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 629.7916870117188 2 629.289365 1256.56418 0.49171 0.00030943 -0.058576 -3.6861E-05 0.43313 0.00027257 629.2891205171892 32.229 0.44968 35.756 35.441 35.89 3.5266 59 43 2 0 0 0 0.56078 1 4862 4862 3.2813 0.28607 1 113620 41112 7252 25978 25990 47044 47044 -0.05384278599831305 SKRRLPYH 8 Unmodified _SKRRLPYH_ 0 0 0 REV__Tigger1_dup5495|chr7:23613733-23616070:-|1.5475462040104593|0.0870165384245082|4.15|151.0|97|1|anti-sense REV__Tigger1_dup5495|chr7:23613733-23616070:-|1.5475462040104593|0.0870165384245082|4.15|151.0|97|1|anti-sense MSMS UPN48_class_I_Rep_3 7 528.7379760742188 2 528.8067 1055.59885 NaN NaN NaN NaN NaN NaN NaN 115.21 1 118.86 118.36 119.36 3.6433 0 0 0 0.40738 1 27408 27408 0.79363 0 1 + 41113 32470 25979 25991 47045 47045 0.07327093385424632 SKRRPAGA 8 Unmodified _SKRRPAGA_ 0 0 0 REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|5|1|sense REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 421.7508850097656 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 66.909 1 70.417 69.917 70.917 3.5077 0 0 0 0.40625 1 15234 15234 2.3027 0 1 + 41114 31644 25980 25992 47046 47046 0.06114873397223164 SKRRPAGA 8 Unmodified _SKRRPAGA_ 0 0 0 REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|5|1|sense REV__MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 421.7511901855469 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 67.078 1 70.586 70.086 71.086 3.5077 0 0 0 0.40738 1 15286 15286 0.79363 0 1 + 41115 31644 25980 25992 47047 47047 0.06114873397223164 SKRRPIPF 8 Unmodified _SKRRPIPF_ 0 0 0 REV__L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|318|3|anti-sense REV__L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|318|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 500.30517578125 2 500.806168 999.597784 0.15494 7.7597E-05 -1.5132 -0.00075784 -1.3583 -0.00068025 500.80622424108606 56.055 0.14163 59.61 59.524 59.665 3.5554 17 12 2 0 0 0 0.72333 1 11940 11940 0.79363 0 1 50688 + 41116 29802 25981 25993 47048 47048 0.09796879016539606 SKRSLPFSR 9 Unmodified _SKRSLPFSR_ 0 0 0 L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|53|1|anti-sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|53|1|anti-sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|53|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 538.8087158203125 2 539.311815 1076.60908 0.42754 0.00023058 -3.272 -0.0017646 -2.8445 -0.0015341 539.3101434358583 70.88 0.10738 74.091 74.067 74.175 3.2113 11 8 2 0 0 0 0.1249 1 17379 17379 1.4819 0.28856 1 65476 41117 12316 25982 25994 47049 47049 0.07383656320052978 SKSFTQPNIN 10 Unmodified _SKSFTQPNIN_ 0 0 0 REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|35|2|sense REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 568.30322265625 2 568.290745 1134.56694 0.13306 7.5619E-05 -0.29099 -0.00016537 -0.15793 -8.9749E-05 568.2906592393135 43.406 0.75481 46.764 46.443 47.198 3.358 59 46 2 0 0 0 0.56078 1 9041 9041 3.2813 0 1 74100 + 41118 25915 25983 25995 47050 47050 0.005036361209931783 SKSGAQTPK 9 Unmodified _SKSGAQTPK_ 0 0 0 nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC nc|ENSG00000134982|P25054-2|APC nc|ENSG00000134982|P25054-2|APC MSMS UPN46_class_I_Rep_3 1 452.2694091796875 2 452.248349 902.482145 NaN NaN NaN NaN NaN NaN NaN 37.084 1 37.084 36.584 37.584 0 0 0 0 0.39598 1 6937 6937 1.6526 0.32309 1 41119 2879 25984 25996 47051 47051 0.0270031037505305 SKSHSGVCHL 10 Unmodified _SKSHSGVCHL_ 0 0 0 L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|175|1|anti-sense L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|175|1|anti-sense L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|175|1|anti-sense MSMS UPN48_class_I_Rep_2 6 527.8165283203125 2 527.758558 1053.50256 NaN NaN NaN NaN NaN NaN NaN 26.094 1 29.727 29.227 30.227 3.6332 0 0 0 0.53105 1 3274 3274 1.8442 0 1 41120 13774 25985 25997 47052 47052 -0.02204842236778859 SKSHTKIIL 9 Unmodified _SKSHTKIIL_ 0 0 0 LTR57-int_dup302|chr22:19502017-19502904:-|1.0151658880547338|0.1806017105677584|2.49|151.0|60|3|anti-sense LTR57-int_dup302|chr22:19502017-19502904:-|1.0151658880547338|0.1806017105677584|2.49|151.0|60|3|anti-sense LTR57-int_dup302|chr22:19502017-19502904:-|1.0151658880547338|0.1806017105677584|2.49|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_3 7 513.8186645507812 2 513.818941 1025.62333 NaN NaN NaN NaN NaN NaN NaN 57.635 1 61.167 60.667 61.667 3.5317 0 0 0 0.37891 1 12417 12417 5.7319 0.50118 1 41121 15681 25986 25998 47053 47053 0.11154308748336916 SKSLFVNN 8 Unmodified _SKSLFVNN_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|3|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|3|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 454.7447814941406 2 454.745442 907.476331 NaN NaN NaN NaN NaN NaN NaN 90.182 1 93.872 93.372 94.372 3.6899 0 0 0 0.40643 1 22538 22538 2.0598 0 1 41122 9338 25987 25999 47054 47054 0.01889211863374385 SKSRKGLW 8 Unmodified _SKSRKGLW_ 0 0 0 REV__MER47B_dup571|chr17:59778759-59779161:+|1.2380618413068838|0.0237108651277445|5.71|151.0|24|2|anti-sense REV__MER47B_dup571|chr17:59778759-59779161:+|1.2380618413068838|0.0237108651277445|5.71|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 481.28338623046875 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 92.704 1 96.328 95.828 96.828 3.624 0 0 0 0.40604 1 22275 22275 2.5775 0.27475 1 + 41123 31341 25988 26000 47055 47055 0.06864599745563282 SKSRKGLW 8 Unmodified _SKSRKGLW_ 0 0 0 REV__MER47B_dup571|chr17:59778759-59779161:+|1.2380618413068838|0.0237108651277445|5.71|151.0|24|2|anti-sense REV__MER47B_dup571|chr17:59778759-59779161:+|1.2380618413068838|0.0237108651277445|5.71|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 481.28338623046875 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 92.825 1 96.449 95.949 96.949 3.624 0 0 0 0.40604 1 22304 22304 2.5775 0.27475 1 + 41124 31341 25988 26000 47056 47056 0.06864599745563282 SKSRRLYA 8 Unmodified _SKSRRLYA_ 0 0 0 L1M4c_dup2534|chr11:67191325-67191928:+|3.430353678412993|0.0376448476948099|6.51|151.0|23|1|anti-sense L1M4c_dup2534|chr11:67191325-67191928:+|3.430353678412993|0.0376448476948099|6.51|151.0|23|1|anti-sense L1M4c_dup2534|chr11:67191325-67191928:+|3.430353678412993|0.0376448476948099|6.51|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.78363037109375 2 490.785433 979.556313 NaN NaN NaN NaN NaN NaN NaN 53.062 1 56.257 55.757 56.757 3.1948 0 0 0 0.40625 1 11939 11939 2.3027 0 1 41125 9056 25989 26001 47057 47057 0.06571698257209846 SKSSITKKKS 10 Unmodified _SKSSITKKKS_ 0 0 0 REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 547.33251953125 2 547.332413 1092.65027 NaN NaN NaN NaN NaN NaN NaN 86.063 1 89.679 89.179 90.179 3.6153 0 0 0 0.53105 1 21493 21493 0 0 1 + 41126 30505 25990 26002 47058 47058 0.10765372568835119 SKSSITKKKS 10 Unmodified _SKSSITKKKS_ 0 0 0 REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 547.3326416015625 2 547.332413 1092.65027 NaN NaN NaN NaN NaN NaN NaN 94.384 1 98.135 97.635 98.635 3.7508 0 0 0 0.53105 1 23453 23453 0 0 1 + 41127 30505 25990 26002 47059 47059 0.10765372568835119 SKSSITKKKS 10 Unmodified _SKSSITKKKS_ 0 0 0 REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 547.3325805664062 2 547.332413 1092.65027 NaN NaN NaN NaN NaN NaN NaN 94.54 1 98.291 97.791 98.791 3.7508 0 0 0 0.53105 1 23485 23485 0 0 1 + 41128 30505 25990 26002 47060 47060 0.10765372568835119 SKSSITKKKS 10 Unmodified _SKSSITKKKS_ 0 0 0 REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense REV__L1PB1_dup9532|chr11:78301725-78303201:+|1.8472668743309064|0.0116231567629671|7.31|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 547.3326416015625 2 547.332413 1092.65027 NaN NaN NaN NaN NaN NaN NaN 117.61 1 121.05 120.55 121.55 3.4425 0 0 0 0.53105 1 28980 28980 0 0 1 + 41129 30505 25990 26002 47061 47061 0.10765372568835119 SKTFNLRV 8 Unmodified _SKTFNLRV_ 0 0 0 nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B MSMS UPN47_class_I_Rep_3 4 482.7820129394531 2 482.782359 963.550165 NaN NaN NaN NaN NaN NaN NaN 32.007 1 35.307 34.807 35.807 3.2991 0 0 0 0.40659 1 5528 5528 1.8442 0 1 41130 16641 25991 26003 47062 47062 0.06693180025706624 SKTIEEQIEDT 11 Unmodified _SKTIEEQIEDT_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MULTI-MSMS UPN47_class_I_Rep_2 3 646.81494140625 2 646.814447 1291.61434 0.48277 0.00031226 0.3779 0.00024443 0.86067 0.00055669 646.8147131069807 78.095 0.40456 81.437 81.237 81.642 3.3428 67 43 2 0 0 0 0.42924 1 19398 19398 9.544 0 1 125350 + 41131 17642 25992 26004 47063 47063 -0.019801741893616054 SKTRNAKLT 9 Unmodified _SKTRNAKLT_ 0 0 0 REV__L1PA17_dup1727|chr6:57121540-57122893:+|1.081935065453998|0.3817324324760628|1.5|151.0|42|3|sense REV__L1PA17_dup1727|chr6:57121540-57122893:+|1.081935065453998|0.3817324324760628|1.5|151.0|42|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 509.8042297363281 2 509.803823 1017.59309 0.321 0.00016365 -0.19111 -9.7428E-05 0.12989 6.6221E-05 509.8036371465231 76.91 1.1213 80.512 80.1 81.222 3.6016 145 105 2 0 0 0 0.49187 1 18036 18036 1.4819 0 1 324950 + 41132 29448 25993 26005 47064 47064 0.08499950083125896 SKTRRPHSYY 10 Unmodified _SKTRRPHSYY_ 0 0 0 REV__L1MB7_dup19374|chr16:81646464-81647237:-|1.11316707604896|0.1512172314320929|2.88|151.0|35|1|anti-sense REV__L1MB7_dup19374|chr16:81646464-81647237:-|1.11316707604896|0.1512172314320929|2.88|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_3 7 647.8367309570312 2 647.836185 1293.65782 NaN NaN NaN NaN NaN NaN NaN 73.797 1 77.348 76.848 77.848 3.5505 0 0 0 0.53105 1 17280 17280 1.4819 0 1 + 41133 26192 25994 26006 47065 47065 0.02273524889142209 SKTTSWVV 8 Unmodified _SKTTSWVV_ 0 0 0 ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|24|2|sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|24|2|sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 454.2464294433594 2 454.247818 906.481082 NaN NaN NaN NaN NaN NaN NaN 95.127 1 98.744 98.244 99.244 3.6167 0 0 0 0.40738 1 22903 22903 0.79363 0 1 41134 7753 25995 26007 47066 47066 0.024100960061332444 SKVIWICL 8 Unmodified _SKVIWICL_ 0 0 0 L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|55|2|anti-sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|55|2|anti-sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|55|2|anti-sense MSMS UPN47_class_I_Rep_3 4 481.30413818359375 2 481.280606 960.546659 NaN NaN NaN NaN NaN NaN NaN 39.63 1 42.868 42.368 43.368 3.238 0 0 0 0.40581 1 7851 7851 2.8892 1.045 1 41135 11584 25996 26008 47067 47067 0.06480793927482864 SKVLIMPIY 9 Unmodified _SKVLIMPIY_ 0 0 0 L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|67|1|anti-sense L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|67|1|anti-sense L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|67|1|anti-sense MSMS UPN46_class_I_Rep_3 1 532.3164672851562 2 532.314646 1062.61474 NaN NaN NaN NaN NaN NaN NaN 113.76 1 113.76 113.26 114.26 0 0 0 0 0.39326 1 28099 28099 2.3027 0.4585 1 41136 12744 25997 26009 47068 47068 0.08593618787494961 SKVMLWLI 8 Unmodified _SKVMLWLI_ 0 0 0 REV__nc|ENSG00000120498|Q8IYF3-2|TEX11 REV__nc|ENSG00000120498|Q8IYF3-2|TEX11 MSMS UPN48_class_I_Rep_1 5 495.2967529296875 2 495.296256 988.57796 NaN NaN NaN NaN NaN NaN NaN 47 1 50.519 50.019 51.019 3.5192 0 0 0 0.40527 1 9239 9239 3.5965 0 1 + 41137 18705 25998 26010 47069 47069 0.08321366961581589 SKVNRPHGH 9 Unmodified _SKVNRPHGH_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS UPN46_class_I_Rep_3 1 516.2763671875 2 516.278306 1030.54206 NaN NaN NaN NaN NaN NaN NaN 71.296 1 71.296 70.796 71.796 0 0 0 0 0.39598 1 16417 16417 1.6526 0.17072 1 + 41138 19087 25999 26011 47070 47070 0.028010458289372764 SKVQENLYY 9 Unmodified _SKVQENLYY_ 0 0 0 REV__ENSG00000181867|ENST00000321339|FTMT REV__ENSG00000181867|ENST00000321339|FTMT MULTI-MSMS UPN47_class_I_Rep_2 3 572.2879028320312 2 572.287671 1142.56079 0.51949 0.0002973 -0.12627 -7.226E-05 0.39322 0.00022504 572.287542997772 58.436 1.4087 61.718 61.234 62.643 3.2818 149 89 2 0 0 0 0.36392 1 13752 13752 10.074 0.6908 1 2025900 + 41139 20742 26000 26012 47071 47071 -0.004788821105421448 SKVRKLYW 8 Unmodified _SKVRKLYW_ 0 0 0 ENST00000409988.7_1_2:201171099-201171237:+|nuORF ENST00000409988.7_1_2:201171099-201171237:+|nuORF ENST00000409988.7_1_2:201171099-201171237:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.32177734375 2 540.321651 1078.62875 0.52194 0.00028201 0.12977 7.0119E-05 0.65171 0.00035213 540.3216345939417 108.73 1.8029 112.37 112.19 113.99 3.6355 383 216 2 0 0 0 0.82752 1 26909 26909 0.79363 0 1 143550000 41140 6629 26001 26013 47072 47072 0.09258032330808419 SKVRKLYW 8 Unmodified _SKVRKLYW_ 0 0 0 ENST00000409988.7_1_2:201171099-201171237:+|nuORF ENST00000409988.7_1_2:201171099-201171237:+|nuORF ENST00000409988.7_1_2:201171099-201171237:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 540.3220825195312 2 540.321651 1078.62875 0.54377 0.00029381 0.33089 0.00017879 0.87466 0.0004726 540.3216672436043 108.72 0.85538 112.4 112.23 113.08 3.6751 294 105 4 0 0 0 0.82752 1 25898 25898 0.79363 0.10326 1 86253000 41141 6629 26001 26013 47073 47073 0.09258032330808419 SKVVNVNLI 9 Unmodified _SKVVNVNLI_ 0 0 0 REV__L1MB4_dup6355|chr12:96273825-96274711:+|1.297017167083402|0.0513327160788691|4.66|150.0|27|3|sense REV__L1MB4_dup6355|chr12:96273825-96274711:+|1.297017167083402|0.0513327160788691|4.66|150.0|27|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.3059997558594 2 493.305667 984.596781 0.2793 0.00013778 -0.30365 -0.00014979 -0.024351 -1.2012E-05 493.3054115669134 65.012 0.60116 68.519 68.312 68.913 3.5077 49 42 2 0 0 0 0.43153 1 14694 14694 6.2058 0 1 65926 + 41142 25994 26002 26014 47074 47074 0.10386619857001733 SKWDRLWRLRQ 11 Unmodified _SKWDRLWRLRQ_ 0 0 0 REV__nc|ENSG00000167757|Q9UBX7|KLK11 REV__nc|ENSG00000167757|Q9UBX7|KLK11 MULTI-MSMS UPN47_class_I_Rep_1 2 515.2915649414062 3 515.291664 1542.85316 -0.21193 -0.0001092 -0.46761 -0.00024096 -0.67954 -0.00035016 515.2913760011354 22.315 0.47202 25.989 25.735 26.207 3.6749 73 44 3 0 0 0 0.68478 1 2607 2607 0.094841 0 1 114490 + 41143 32050 26003 26015 47075 47075 0.10345115413952044 SKWDRLWRLRQ 11 Unmodified _SKWDRLWRLRQ_ 0 0 0 REV__nc|ENSG00000167757|Q9UBX7|KLK11 REV__nc|ENSG00000167757|Q9UBX7|KLK11 MULTI-MSMS UPN47_class_I_Rep_2 3 515.2916259765625 3 515.291664 1542.85316 -0.30408 -0.00015669 -0.40269 -0.0002075 -0.70677 -0.00036419 515.2914054905685 22.754 0.77631 26.199 25.873 26.649 3.4447 146 71 3 0 0 0 0.68478 1 2721 2721 0.094841 0.021578 1 88341 + 41144 32050 26003 26015 47076 47076 0.10345115413952044 SKWDRLWRLRQ 11 Unmodified _SKWDRLWRLRQ_ 0 0 0 REV__nc|ENSG00000167757|Q9UBX7|KLK11 REV__nc|ENSG00000167757|Q9UBX7|KLK11 MULTI-MSMS UPN47_class_I_Rep_3 4 515.2914428710938 3 515.291664 1542.85316 -0.45382 -0.00023385 -0.22048 -0.00011361 -0.6743 -0.00034746 515.2914537261532 23.077 0.78378 26.427 26.027 26.811 3.3503 122 63 3 0 0 0 0.68478 1 2901 2901 0.094841 0 1 93027 + 41145 32050 26003 26015 47077 47077 0.10345115413952044 SKWLTAPY 8 Unmodified _SKWLTAPY_ 0 0 0 REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|15|1|sense REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|15|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 483.42578125 2 483.258185 964.501818 0.2495 0.00012057 -0.77408 -0.00037408 -0.52458 -0.00025351 483.2575734627743 44.461 0.098137 44.461 44.404 44.502 0 13 10 2 0 0 0 0.82752 1 8972 8972 6.3541 0 1 73388 + 41146 29051 26004 26016 47078 47078 0.01814686385796449 SKWNYLTRRQR 11 Unmodified _SKWNYLTRRQR_ 0 0 0 REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|4|1|sense REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|4|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 503.1077575683594 3 503.279536 1506.81678 0.31301 0.00015753 -0.56658 -0.00028515 -0.25357 -0.00012762 503.94797414976114 110.31 0.24968 110.31 110.23 110.48 0 47 24 3 0 0 0 22.551 1 27193 27193 0.45452 0 1 132530 + 41147 24585 26005 26017 47079 47079 0.08364238517242484 SKWVTKAF 8 Unmodified _SKWVTKAF_ 0 0 0 REV__L1M4_dup14671|chr12:51160632-51161398:+|3.9006670099527367|0.0883559733445184|5.46|151.0|16|2|sense REV__L1M4_dup14671|chr12:51160632-51161398:+|3.9006670099527367|0.0883559733445184|5.46|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 483.77459716796875 2 483.774003 965.533452 NaN NaN NaN NaN NaN NaN NaN 34.435 1 37.949 37.449 38.449 3.5144 0 0 0 0.40625 1 5507 5507 2.3027 0 1 + 41148 24371 26006 26018 47080 47080 0.04930679139761196 SKYKKHKG 8 Unmodified _SKYKKHKG_ 0 0 0 L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.2908935546875 2 488.290351 974.566149 0.2634 0.00012862 0.35755 0.00017459 0.62095 0.0003032 488.2903890115215 107.81 0.22472 111.48 111.41 111.64 3.6724 35 14 4 0 0 0 0.82752 1 26416 26416 7.9102 0 1 46509000 41149 15160 26007 26019 47081 47081 0.07784886262618329 SKYKKHKG 8 Unmodified _SKYKKHKG_ 0 0 0 L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 488.29022216796875 2 488.290351 974.566149 0.14585 7.1216E-05 0.27082 0.00013224 0.41667 0.00020346 488.29041521095985 107.81 0.35009 111.44 111.35 111.7 3.6313 70 28 4 0 0 0 0.82752 1 25995 25995 7.9102 0 1 112750000 41150 15160 26007 26019 47082 47082 0.07784886262618329 SKYKKHKG 8 Unmodified _SKYKKHKG_ 0 0 0 L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.2904052734375 2 488.290351 974.566149 0.25759 0.00012578 0.16731 8.1694E-05 0.4249 0.00020747 488.2903572287797 107.78 0.15932 111.45 111.4 111.56 3.6783 46 14 4 0 0 0 0.82752 1 25487 25487 7.9102 0 1 89676000 41151 15160 26007 26019 47083 47083 0.07784886262618329 SKYKKHKG 8 Unmodified _SKYKKHKG_ 0 0 0 L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|12|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 488.290351 974.566149 0.2573 0.00012564 -0.87331 -0.00042643 -0.61601 -0.00030079 488.28966334247053 108 0.10989 111.67 111.59 111.7 3.6746 0.21248 -0.0010121 NaN 7.9102 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 784230 41152 15160 26007 26019 0.07784886262618329 SKYKKHQR 8 Unmodified _SKYKKHQR_ 0 0 0 L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|93|3|sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|93|3|sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|93|3|sense MSMS UPN46_class_I_Rep_3 1 537.8128662109375 2 537.811982 1073.60941 NaN NaN NaN NaN NaN NaN NaN 109.3 1 109.3 108.8 109.8 0 0 0 0 0.40157 1 26822 26822 7.2892 0.56607 1 41153 15038 26008 26020 47084 47084 0.07555076039898267 SKYKKHQR 8 Unmodified _SKYKKHQR_ 0 0 0 L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|93|3|sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|93|3|sense L1PB1_dup126|chr1:53810764-53814071:+|1.4516896981125726|0.0229716485385195|5.98|151.0|93|3|sense MSMS UPN47_class_I_Rep_1 2 537.8126831054688 2 537.811982 1073.60941 NaN NaN NaN NaN NaN NaN NaN 108.84 1 112.48 111.98 112.98 3.6355 0 0 0 0.40157 1 26797 26797 7.2892 0 1 41154 15038 26008 26020 47085 47085 0.07555076039898267 SKYLVEDLF 9 Unmodified _SKYLVEDLF_ 0 0 0 REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|118|1|anti-sense REV__L1MC1_dup11181|chr15:56207720-56210896:+|2.95220597144944|0.0296700452977626|6.64|151.0|118|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.2859497070312 2 557.294965 1112.57538 NaN NaN NaN NaN NaN NaN NaN 70.145 1 70.145 69.645 70.645 0 0 0 0 0.2408 1 16107 16107 13.906 2.2658 1 + 41155 26496 26009 26021 47086 47086 0.02359190037600456 SKYVLVKF 8 Unmodified _SKYVLVKF_ 0 0 0 REV__L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|64|1|anti-sense REV__L1MEc_dup11616|chr10:12009507-12010989:+|1.3659483838665938|0.0466669191197552|4.87|150.0|64|1|anti-sense MSMS UPN47_class_I_Rep_3 4 492.30108642578125 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 50.7 1 53.916 53.416 54.416 3.2163 0 0 0 0.40604 1 11223 11223 2.5775 0 1 + 41156 28357 26010 26022 47087 47087 0.09316422833671822 SLADIAQKL 9 Unmodified _SLADIAQKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;ENST00000485835.1_1_17:38151035-38151804:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-SECPEP UPN47_class_I_Rep_3 4 480.2997741699219 2 479.782025 957.549496 0.004406 2.1139E-06 0.05688 2.729E-05 0.061286 2.9404E-05 479.78226129136016 57.476 0.25249 60.644 60.455 60.707 3.1681 27 19 3 0 0 0 0.11884 1 13295 13295 9.3831 0 1 70122 41157 1858 26011 26023 47088 47088 0.06902340586009359 SLADLYFRA 9 Unmodified _SLADLYFRA_ 0 0 0 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 528.279052734375 2 528.279649 1054.54475 0.28093 0.00014841 0.19291 0.00010191 0.47384 0.00025032 528.2796147303362 68.004 0.34369 68.004 67.84 68.184 0 40 34 2 0 0 0 0.0070571 4 15483 15483;15517;15525;15541 86.332 42.474 1 388310 41158 400 26012 26024 47089;47090;47091;47092 47089 0.0196545644323578 SLADLYFRA 9 Unmodified _SLADLYFRA_ 0 0 0 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 528.2798461914062 2 528.279649 1054.54475 0.33744 0.00017826 -0.12559 -6.6345E-05 0.21186 0.00011192 528.2795217224095 62.707 0.80735 66.066 65.625 66.433 3.3595 112 52 3 0 0 0 0.0070571 5 14764 14718;14764;14804;14847;14890 86.332 42.474 1 302950 41159 400 26012 26024 47093;47094;47095;47096;47097 47094 0.0196545644323578 SLADLYFRA 9 Unmodified _SLADLYFRA_ 0 0 0 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 528.2796020507812 2 528.279649 1054.54475 0.16309 8.6158E-05 0.17516 9.2536E-05 0.33826 0.00017869 528.2797023233403 62.845 0.77042 66.101 65.836 66.607 3.2558 115 50 3 0 0 0 0.006828 6 14948 14817;14826;14870;14909;14948;14990 106.94 45.583 1 312010 41160 400 26012 26024 47098;47099;47100;47101;47102;47103 47102 0.0196545644323578 SLADLYFRA 9 Unmodified _SLADLYFRA_ 0 0 0 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 528.27978515625 2 528.279649 1054.54475 0.33985 0.00017954 -0.067407 -3.561E-05 0.27244 0.00014393 528.2795527282547 62.874 0.96909 66.043 65.797 66.766 3.1698 116 64 3 0 0 0 0.0070571 3 14944 14899;14944;14988 86.332 42.474 1 287180 41161 400 26012 26024 47104;47105;47106 47105 0.0196545644323578 SLADQAPNF 9 Unmodified _SLADQAPNF_ 0 0 0 ENST00000472828.1_1_2:179695251-179701862:-|nuORF;ENST00000480419.1_1_2:179698902-179710451:-|nuORF;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141 ENST00000472828.1_1_2:179695251-179701862:-|nuORF ENST00000472828.1_1_2:179695251-179701862:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 481.7325744628906 2 481.732532 961.45051 0.1988 9.5766E-05 0.019141 9.2207E-06 0.21794 0.00010499 481.7324548803119 53.631 1.3143 53.631 53.19 54.504 0 309 140 3 0 0 0 0.056917 1 11601 11601 46.021 8.047 1 2286200 41162 4010 26013 26025 47107 47107 -0.031756823789010014 SLADVHIEV 9 Unmodified _SLADVHIEV_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS UPN47_class_I_Rep_1 2 491.763671875 2 491.763832 981.513111 0.12809 6.2988E-05 0.0094508 4.6475E-06 0.13754 6.7635E-05 491.7638306078558 56.352 0.77319 59.809 59.34 60.113 3.4572 79 43 3 0 0 0 0.21527 2 12851 12810;12851 19.257 4.4187 1 209470 41163 1413 26014 26026 47108;47109 47109 0.02161463689287757 SLADVHIEV 9 Unmodified _SLADVHIEV_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS UPN47_class_I_Rep_2 3 491.76385498046875 2 491.763832 981.513111 0.37114 0.00018251 -0.23295 -0.00011456 0.13819 6.7955E-05 491.763719712772 56.575 0.61495 59.876 59.511 60.126 3.3009 68 40 2 0 0 0 0.13631 4 12986 12874;12917;12944;12986 26.884 7.7623 1 249800 41164 1413 26014 26026 47110;47111;47112;47113 47113 0.02161463689287757 SLADVHIEV 9 Unmodified _SLADVHIEV_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS UPN47_class_I_Rep_3 4 491.7637634277344 2 491.763832 981.513111 0.1539 7.5681E-05 0.033295 1.6373E-05 0.18719 9.2054E-05 491.76377622544584 56.638 0.56681 59.81 59.461 60.028 3.1721 51 33 2 0 0 0 0.1249 3 13050 12967;13010;13050 29.082 13.833 1 210370 41165 1413 26014 26026 47114;47115;47116 47116 0.02161463689287757 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.2658386230469 2 497.266207 992.517862 0.204 0.00010144 -1.0378 -0.00051606 -0.83379 -0.00041462 497.2658884049039 80.77 0.16018 84.258 84.195 84.356 3.4874 27 17 2 0 0 0 0.19092 1 20127 20127 21.59 4.4773 1 111020 41166 5192 26015 26027 47117 47117 0.02130347832053303 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS UPN47_class_I_Rep_1 2 497.2657470703125 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 80.463 1 83.95 83.45 84.45 3.4874 0 0 0 0.031346 1 20047 20047 43.982 14.9 1 41167 5192 26015 26027 47118 47118 0.02130347832053303 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS UPN47_class_I_Rep_1 2 497.2662658691406 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 80.972 1 84.459 83.959 84.959 3.4874 0 0 0 0.23173 1 20189 20189 14.405 0.49933 1 41168 5192 26015 26027 47119 47119 0.02130347832053303 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS UPN47_class_I_Rep_1 2 497.2667541503906 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 81.316 1 84.803 84.303 85.303 3.4874 0 0 0 0.3377 1 20289 20289 8.7454 0 1 41169 5192 26015 26027 47120 47120 0.02130347832053303 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 497.266207 992.517862 0.25199 0.00012531 -0.63874 -0.00031762 -0.38675 -0.00019232 497.2658127347408 80.983 0.38851 84.307 84.276 84.665 3.3231 0.024527 5.1727E-05 NaN 21.59 73 46 2 NaN NaN NaN NaN 0 NaN NaN 0 202760 41170 5192 26015 26027 0.02130347832053303 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS UPN46_class_I_Rep_3 1 473.2720947265625 2 473.271824 944.529095 0.21279 0.00010071 -0.025581 -1.2107E-05 0.1872 8.8599E-05 473.2717105463623 46.324 0.62729 46.324 46.02 46.648 0 111 67 2 0 0 0 0.023676 4 9468 9429;9468;9505;9542 61.09 9.6747 1 263540 41171 1969 26016 26028 47121;47122;47123;47124 47122 0.05461169926184084 SLAELVHAV 9 Unmodified _SLAELVHAV_ 0 0 0 nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1 nc|ENSG00000080546|Q9Y6P5-3|SESN1 nc|ENSG00000080546|Q9Y6P5-3|SESN1 MULTI-MSMS UPN47_class_I_Rep_3 4 469.76885986328125 2 469.768917 937.523281 -0.12369 -5.8104E-05 0.19692 9.2506E-05 0.073232 3.4402E-05 469.76906609176183 59.098 0.25509 62.264 62.129 62.384 3.1658 23 14 2 0 0 0 0.13631 1 13779 13779 26.884 5.137 1 71228 41172 1203 26017 26029 47125 47125 0.0520207141452147 SLAELVHAV 9 Unmodified _SLAELVHAV_ 0 0 0 nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1 nc|ENSG00000080546|Q9Y6P5-3|SESN1 nc|ENSG00000080546|Q9Y6P5-3|SESN1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 469.768917 937.523281 0.12622 5.9294E-05 0.0032889 1.545E-06 0.12951 6.0839E-05 469.7687392415476 59.266 0.059246 62.539 62.509 62.568 3.2731 0.13764 -0.00010343 NaN 26.884 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 32700 41173 1203 26017 26029 0.0520207141452147 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENST00000482694.1_1_2:85577073-85578124:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.7878723144531 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 80.935 1 84.423 83.923 84.923 3.4874 0 0 0 0.25702 1 20178 20178 13.042 0 1 41174 871 26018 26030 47126 47126 0.06026323240439524 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENST00000482694.1_1_2:85577073-85578124:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.7875061035156 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 81.079 1 84.566 84.066 85.066 3.4874 0 0 0 0.25702 1 20221 20221 13.042 0 1 41175 871 26018 26030 47127 47127 0.06026323240439524 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENST00000482694.1_1_2:85577073-85578124:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.7874450683594 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 81.306 1 84.794 84.294 85.294 3.4874 0 0 0 0.20399 1 20286 20286 16.149 0 1 41176 871 26018 26030 47128 47128 0.06026323240439524 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENST00000482694.1_1_2:85577073-85578124:-|nuORF MSMS UPN47_class_I_Rep_2 3 500.78765869140625 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 81.145 1 84.529 84.029 85.029 3.3839 0 0 0 0.20399 1 20206 20206 16.149 0 1 41177 871 26018 26030 47129 47129 0.06026323240439524 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENST00000482694.1_1_2:85577073-85578124:-|nuORF MSMS UPN47_class_I_Rep_2 3 500.7879943847656 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 81.301 1 84.685 84.185 85.185 3.3839 0 0 0 0.20399 1 20245 20245 16.149 0 1 41178 871 26018 26030 47130 47130 0.06026323240439524 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENST00000482694.1_1_2:85577073-85578124:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.78875732421875 2 500.787307 999.560061 0.26375 0.00013208 0.34482 0.00017268 0.60857 0.00030476 500.7873934293775 81.421 0.78589 84.744 84.326 85.111 3.3231 148 87 2 0 0 0 0.006828 8 20320 20300;20320;20335;20367;20403;20418;20438;20457 72.968 23.035 1 263420 41179 871 26018 26030 47131;47132;47133;47134;47135;47136;47137;47138 47132 0.06026323240439524 SLAFSTLASV 10 Unmodified _SLAFSTLASV_ 0 0 0 ENST00000606025.5_3_2:71168962-71169430:-|nuORF ENST00000606025.5_3_2:71168962-71169430:-|nuORF ENST00000606025.5_3_2:71168962-71169430:-|nuORF MSMS UPN47_class_I_Rep_3 4 498.2742004394531 2 498.274032 994.533512 NaN NaN NaN NaN NaN NaN NaN 62.538 1 65.708 65.208 66.208 3.1698 0 0 0 0.53105 1 14834 14834 9.3831 0 1 41180 7681 26019 26031 47139 47139 0.03602634349113032 SLAFTKKKG 9 Unmodified _SLAFTKKKG_ 0 0 0 REV__L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense REV__L1ME4b_dup351|chr1:44494360-44494820:+|7.451276292697017|0.0010783961897788|12.75|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 490.77667236328125 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 107.78 1 111.45 110.95 111.95 3.6724 0 0 0 0.38639 1 26418 26418 3.9444 0 1 + 41181 28293 26020 26032 47140 47140 0.0960663720258026 SLAFVDLLL 9 Unmodified _SLAFVDLLL_ 0 0 0 ENSG00000173890|ENST00000355897|GPR160 ENSG00000173890|ENST00000355897|GPR160 ENSG00000173890|ENST00000355897|GPR160 MSMS UPN47_class_I_Rep_3 4 495.78070068359375 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 84.186 1 87.548 87.048 88.048 3.3615 0 0 0 0.38299 1 21126 21126 4.756 1.8668 1 41182 4652 26021 26033 47141 47141 0.08452699251199647 SLAGGLKY 8 Unmodified _SLAGGLKY_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|186|1|anti-sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|186|1|anti-sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|186|1|anti-sense MSMS UPN47_class_I_Rep_3 4 404.7304382324219 2 404.731803 807.449054 NaN NaN NaN NaN NaN NaN NaN 66.318 1 69.504 69.004 70.004 3.1853 0 0 0 0.39819 1 15987 15987 8.5933 0 1 41183 8082 26022 26034 47142 47142 0.03762728322988096 SLAHVLMGLL 10 Unmodified _SLAHVLMGLL_ 0 0 0 L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|266|3|anti-sense L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|266|3|anti-sense L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|266|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.2710571289062 2 527.309895 1052.60524 NaN NaN NaN NaN NaN NaN NaN 34.806 1 38.32 37.82 38.82 3.5144 0 0 0 0.53105 1 5615 5615 1.4819 0.68827 1 41184 9297 26023 26035 47143 47143 0.08103850501970555 SLALLVGPV 9 Unmodified _SLALLVGPV_ 0 0 0 HERV1_I-int_dup14|chr8:38087765-38090706:-|2.10475376678976|0.2695752885664044|2.96|151.0|166|3|anti-sense HERV1_I-int_dup14|chr8:38087765-38090706:-|2.10475376678976|0.2695752885664044|2.96|151.0|166|3|anti-sense HERV1_I-int_dup14|chr8:38087765-38090706:-|2.10475376678976|0.2695752885664044|2.96|151.0|166|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 435.251220703125 2 434.778754 867.542954 -0.40552 -0.00017631 0.44303 0.00019262 0.037514 1.631E-05 434.7803421536242 71.041 0.21334 74.252 74.128 74.341 3.2113 25 17 2 0 0 0 0.12422 1 17414 17414 2.3027 1.7012 1 26141 41185 7991 26024 26036 47144 47144 0.10388447425293634 SLALLVGPV 9 Unmodified _SLALLVGPV_ 0 0 0 HERV1_I-int_dup14|chr8:38087765-38090706:-|2.10475376678976|0.2695752885664044|2.96|151.0|166|3|anti-sense HERV1_I-int_dup14|chr8:38087765-38090706:-|2.10475376678976|0.2695752885664044|2.96|151.0|166|3|anti-sense HERV1_I-int_dup14|chr8:38087765-38090706:-|2.10475376678976|0.2695752885664044|2.96|151.0|166|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 435.2507629394531 2 434.778754 867.542954 0.19403 8.4361E-05 0.51347 0.00022325 0.7075 0.00030761 434.77992920946497 70.751 0.17899 74.27 74.157 74.336 3.5185 24 18 2 0 0 0 0.12422 1 16399 16399 2.3027 0 1 46030 41186 7991 26024 26036 47145 47145 0.10388447425293634 SLALPQCLH 9 Unmodified _SLALPQCLH_ 0 0 0 REV__L1ME3A_dup8204|chr9:77786638-77787116:+|1.664239762794557|0.0200811064769451|6.37|151.0|23|1|anti-sense REV__L1ME3A_dup8204|chr9:77786638-77787116:+|1.664239762794557|0.0200811064769451|6.37|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_1 2 491.2724609375 2 491.262945 980.511337 NaN NaN NaN NaN NaN NaN NaN 56.595 1 60.052 59.552 60.552 3.4572 0 0 0 0.13551 1 12938 12938 20.454 1.1966 1 + 41187 28036 26025 26037 47146 47146 0.020301313996810677 SLALSPRLL 9 Unmodified _SLALSPRLL_ 0 0 0 AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|11|2|anti-sense AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|11|2|anti-sense AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|11|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 485.3080139160156 2 485.30821 968.601866 0.12803 6.2136E-05 -0.041782 -2.0277E-05 0.086252 4.1859E-05 485.3080585201397 48.687 1.1055 52.211 51.815 52.92 3.5239 199 80 4 0 0 0 0.081756 1 9702 9702 38.176 3.7738 1 1127400 41188 213 26026 26038 47147 47147 0.11630923719621933 SLAPQICHI 9 Unmodified _SLAPQICHI_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|128|3|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|128|3|sense MSMS UPN47_class_I_Rep_2 3 491.2725830078125 2 491.262945 980.511337 NaN NaN NaN NaN NaN NaN NaN 56.913 1 60.213 59.713 60.713 3.3009 0 0 0 0.31276 1 13065 13065 10.074 0.72649 1 + 41189 25167 26027 26039 47148 47148 0.020301313996810677 SLAPRTVLL 9 Unmodified _SLAPRTVLL_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|23|2|sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 485.3080749511719 2 485.30821 968.601866 0.12803 6.2136E-05 -0.041782 -2.0277E-05 0.086252 4.1859E-05 485.3080585201397 48.687 1.1055 52.211 51.815 52.92 3.5239 199 80 4 0 0 0 0.043452 3 9786 9746;9786;9825 51.63 0 1 1127400 + 41190 26435 26028 26040 47149;47150;47151 47150 0.11630923719621933 SLAPRTVLL 9 Unmodified _SLAPRTVLL_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|23|2|sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 485.30810546875 2 485.30821 968.601866 0.16018 7.7737E-05 -0.18756 -9.1026E-05 -0.027383 -1.3289E-05 485.30803157864375 48.497 1.1296 52.215 51.766 52.896 3.7175 182 79 3 0 0 0 0.026395 1 9695 9695 59.368 3.8656 1 1253200 + 41191 26435 26028 26040 47152 47152 0.11630923719621933 SLAPRTVLL 9 Unmodified _SLAPRTVLL_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|23|2|sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 485.30816650390625 2 485.30821 968.601866 0.14129 6.857E-05 -0.08486 -4.1183E-05 0.056431 2.7387E-05 485.3080606755157 48.616 0.96106 52.245 51.867 52.828 3.6291 188 74 3 0 0 0 0.026395 3 9699 9661;9699;9776 59.368 3.8656 1 1587600 + 41192 26435 26028 26040 47153;47154;47155 47154 0.11630923719621933 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 496.7742614746094 2 496.7742 991.533846 0.14412 7.1593E-05 0.013082 6.4987E-06 0.1572 7.8091E-05 496.7741852700216 71.15 0.73013 74.525 74.288 75.018 3.3751 126 61 3 0 0 0 0.0065234 3 17326 17326;17361;17400 100.09 27.123 1 444150 41193 4424 26029 26041 47156;47157;47158 47156 0.037740540689469526 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS UPN47_class_I_Rep_2 3 496.77410888671875 2 496.7742 991.533846 0.22512 0.00011184 -0.059426 -2.9521E-05 0.1657 8.2314E-05 496.7741447971164 71.339 0.83162 74.629 74.375 75.207 3.2899 148 72 3 0 0 0 0.0060665 4 17444 17403;17444;17483;17521 90.135 33.958 1 533990 41194 4424 26029 26041 47159;47160;47161;47162 47160 0.037740540689469526 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 496.7743835449219 2 496.7742 991.533846 0.22722 0.00011288 0.025566 1.2701E-05 0.25279 0.00012558 496.7741820357467 71.519 0.80157 74.738 74.381 75.182 3.2188 141 64 3 0 0 0 0.0060665 4 17527 17489;17527;17567;17609 90.135 26.174 1 504440 41195 4424 26029 26041 47163;47164;47165;47166 47164 0.037740540689469526 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN46_class_I_Rep_3 1 510.88775634765625 2 510.78985 1019.56515 0.31703 0.00016194 -0.29648 -0.00015144 0.020547 1.0495E-05 510.7897484542096 84.951 0.58156 84.951 84.678 85.26 0 78 56 2 0 0 0 0.048729 3 20227 20220;20227;20258 49.527 16.742 1 9454300 41196 5347 26030 26042 47167;47168;47169 47168 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_1 2 510.78997802734375 2 510.78985 1019.56515 0.27148 0.00013867 0.085307 4.3574E-05 0.35678 0.00018224 510.78985108990656 79.894 0.85602 83.359 82.629 83.485 3.465 222 94 3 0 0 0 0.0069835 6 19889 19752;19787;19823;19856;19889;19919 145.13 52.429 1 864650 41197 5347 26030 26042 47170;47171;47172;47173;47174;47175 47174 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MSMS UPN47_class_I_Rep_1 2 510.7901306152344 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 80.241 1 83.706 83.206 84.206 3.465 0 0 0 0.11743 1 19993 19993 21.59 4.6479 1 41198 5347 26030 26042 47176 47176 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7898254394531 2 510.78985 1019.56515 0.1849 9.4445E-05 0.13753 7.0248E-05 0.32243 0.00016469 510.7898136404811 79.664 0.76996 83.019 82.658 83.428 3.3554 216 88 3 0 0 0 0.0060665 7 19911 19752;19774;19810;19845;19879;19911;19943 121.53 42.806 1 773540 41199 5347 26030 26042 47177;47178;47179;47180;47181;47182;47183 47182 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_2 3 510.79083251953125 2 510.78985 1019.56515 0.19041 9.7258E-05 1.2631 0.00064516 1.4535 0.00074242 510.7906397907342 80.185 0.040955 83.555 83.532 83.573 3.3694 7 5 2 0 0 0 0.13455 1 19975 19975 27.223 6.8087 1 167310 41200 5347 26030 26042 47184 47184 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MULTI-MSMS UPN47_class_I_Rep_3 4 510.7897033691406 2 510.78985 1019.56515 0.29239 0.00014935 -0.13331 -6.8095E-05 0.15908 8.1255E-05 510.78969212991404 79.759 0.99326 83.054 82.677 83.671 3.295 336 112 4 0 0 0 2.6985E-05 8 19921 19847;19885;19921;19959;19996;20029;20061;20092 185.05 81.302 1 1978800 41201 5347 26030 26042 47185;47186;47187;47188;47189;47190;47191;47192 47187 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MSMS UPN47_class_I_Rep_3 4 510.79083251953125 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 80.583 1 83.892 83.392 84.392 3.309 0 0 0 0.11743 1 20158 20158 21.59 4.6479 1 41202 5347 26030 26042 47193 47193 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF nc|ENSG00000197111|Q15366-7|PCBP2 nc|ENSG00000197111|Q15366-7|PCBP2 MSMS UPN47_class_I_Rep_3 4 510.78924560546875 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 80.646 1 83.955 83.455 84.455 3.309 0 0 0 0.093407 1 20173 20173 26.021 6.6588 1 41203 5347 26030 26042 47194 47194 0.056146271030456774 SLARPTLVL 9 Unmodified _SLARPTLVL_ 0 0 0 REV__ENST00000578788.1_1_17:8870862-8871099:+|nuORF REV__ENST00000578788.1_1_17:8870862-8871099:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 485.3081970214844 2 485.30821 968.601866 0.14129 6.857E-05 -0.08486 -4.1183E-05 0.056431 2.7387E-05 485.3080606755157 48.616 0.96106 52.245 51.867 52.828 3.6291 188 74 3 0 0 0 0.066364 1 9737 9737 41.956 0 1 1587600 + 41204 23116 26031 26043 47195 47195 0.11630923719621933 SLARTKPH 8 Unmodified _SLARTKPH_ 0 0 0 L1ME2z_dup1580|chr4:42050654-42051766:+|1.6526953607635204|0.2219664303624296|2.9|151.0|10|1|sense L1ME2z_dup1580|chr4:42050654-42051766:+|1.6526953607635204|0.2219664303624296|2.9|151.0|10|1|sense L1ME2z_dup1580|chr4:42050654-42051766:+|1.6526953607635204|0.2219664303624296|2.9|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 455.26849365234375 2 455.266876 908.519199 NaN NaN NaN NaN NaN NaN NaN 23.286 1 26.73 26.23 27.23 3.4447 0 0 0 0.40659 1 2910 2910 1.8442 0 1 41205 12551 26032 26044 47196 47196 0.06128026711473922 SLASVFVRL 9 Unmodified _SLASVFVRL_ 0 0 0 ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024.17,HDAC4,chr2,-,I33.1,239066982,239068488|44|7.07|2|intron;nc|ENSG00000068024|P56524-2|HDAC4;ENSG00000068024.17,HDAC4,chr2,-,I34.1,239055341,239066721|26|9.22|1|intron;ENSG00000068024.17,HDAC4,chr2,-,I34.1,239055341,239066721|26|9.22|3|intron;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4 ENST00000487617.5_1_2:240002789-240024568:-|nuORF ENST00000487617.5_1_2:240002789-240024568:-|nuORF MSMS UPN47_class_I_Rep_1 2 496.3008117675781 2 496.300384 990.586216 NaN NaN NaN NaN NaN NaN NaN 68.752 1 72.117 71.617 72.617 3.3646 0 0 0 0.11827 1 16618 16618 21.537 3.3906 1 41206 1043 26033 26045 47197 47197 0.09054637202575577 SLASVFVRL 9 Unmodified _SLASVFVRL_ 0 0 0 ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024.17,HDAC4,chr2,-,I33.1,239066982,239068488|44|7.07|2|intron;nc|ENSG00000068024|P56524-2|HDAC4;ENSG00000068024.17,HDAC4,chr2,-,I34.1,239055341,239066721|26|9.22|1|intron;ENSG00000068024.17,HDAC4,chr2,-,I34.1,239055341,239066721|26|9.22|3|intron;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4 ENST00000487617.5_1_2:240002789-240024568:-|nuORF ENST00000487617.5_1_2:240002789-240024568:-|nuORF MSMS UPN47_class_I_Rep_1 2 496.3006591796875 2 496.300384 990.586216 NaN NaN NaN NaN NaN NaN NaN 68.772 1 72.136 71.636 72.636 3.3646 0 0 0 0.25702 1 16624 16624 13.042 3.6593 1 41207 1043 26033 26045 47198 47198 0.09054637202575577 SLASVFVRL 9 Unmodified _SLASVFVRL_ 0 0 0 ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024.17,HDAC4,chr2,-,I33.1,239066982,239068488|44|7.07|2|intron;nc|ENSG00000068024|P56524-2|HDAC4;ENSG00000068024.17,HDAC4,chr2,-,I34.1,239055341,239066721|26|9.22|1|intron;ENSG00000068024.17,HDAC4,chr2,-,I34.1,239055341,239066721|26|9.22|3|intron;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4 ENST00000487617.5_1_2:240002789-240024568:-|nuORF ENST00000487617.5_1_2:240002789-240024568:-|nuORF MSMS UPN47_class_I_Rep_1 2 496.3003234863281 2 496.300384 990.586216 NaN NaN NaN NaN NaN NaN NaN 68.91 1 72.278 71.778 72.778 3.3678 0 0 0 0.31276 1 16666 16666 10.074 2.7847 1 41208 1043 26033 26045 47199 47199 0.09054637202575577 SLATAPTHVW 10 Unmodified _SLATAPTHVW_ 0 0 0 nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1;ENST00000466618.1_1_2:242002912-242027813:+|nuORF nc|ENSG00000162804|Q8TER0-5|SNED1 nc|ENSG00000162804|Q8TER0-5|SNED1 MULTI-MSMS UPN47_class_I_Rep_2 3 541.7857055664062 2 541.785099 1081.55564 0.4434 0.00024023 -1.1647 -0.00063101 -0.72129 -0.00039078 541.7842674514014 50.973 0.4172 54.312 54.2 54.617 3.3386 36 22 2 0 0 0 0.55983 1 11291 11291 3.9444 0.3479 1 74527 41209 3962 26034 26046 47200 47200 0.01812858817538654 SLATSAKPK 9 Unmodified _SLATSAKPK_ 0 0 0 REV__L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|70|2|anti-sense REV__L1MA3_dup7745|chr15:55882108-55883678:+|1.6821336370429163|0.0262896349814017|6.0|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_1 2 451.76715087890625 2 451.768917 901.523281 NaN NaN NaN NaN NaN NaN NaN 19.647 1 23.259 22.759 23.759 3.6118 0 0 0 0.39518 1 1845 1845 1.8442 1.0506 1 + 41210 25111 26035 26047 47201 47201 0.06858071414512779 SLATTHPVPV 10 Unmodified _SLATTHPVPV_ 0 0 0 REV__nc|ENSG00000086062|P15291-2|B4GALT1 REV__nc|ENSG00000086062|P15291-2|B4GALT1 MULTI-MSMS UPN47_class_I_Rep_1 2 511.28765869140625 2 511.287474 1020.5604 0.26562 0.00013581 -0.17984 -9.1952E-05 0.085776 4.3856E-05 511.287314437519 59.296 0.66941 62.713 62.394 63.063 3.4171 81 47 2 0 0 0 0.38932 1 13725 13725 20.454 1.1966 1 224380 + 41211 17965 26036 26048 47202 47202 0.05093742960286818 SLAVYGKLDLV 11 Unmodified _SLAVYGKLDLV_ 0 0 0 REV__MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|32|1|anti-sense REV__MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 589.3425903320312 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 90.648 1 90.648 90.148 91.148 0 0 0 0 0.38417 1 21863 21863 4.1895 0.24511 1 + 41212 31365 26037 26049 47203 47203 0.09415427371436635 SLAVYGKLDLV 11 Unmodified _SLAVYGKLDLV_ 0 0 0 REV__MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|32|1|anti-sense REV__MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 589.3435668945312 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 91.241 1 91.241 90.741 91.741 0 0 0 0 0.38417 1 22030 22030 4.1895 2.1298 1 + 41213 31365 26037 26049 47204 47204 0.09415427371436635 SLAVYGKLDLV 11 Unmodified _SLAVYGKLDLV_ 0 0 0 REV__MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|32|1|anti-sense REV__MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|32|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.34375 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 86.607 1 90.22 89.72 90.72 3.613 0 0 0 0.38417 1 20752 20752 2.4985 0 1 + 41214 31365 26037 26049 47205 47205 0.09415427371436635 SLAVYTTSAV 10 Unmodified _SLAVYTTSAV_ 0 0 0 Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|109|2|anti-sense Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|109|2|anti-sense Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|109|2|anti-sense MSMS UPN47_class_I_Rep_2 3 506.2712097167969 2 506.27149 1010.52843 NaN NaN NaN NaN NaN NaN NaN 62.384 1 65.643 65.143 66.143 3.2594 0 0 0 0.53105 1 14728 14728 6.2058 0 1 41215 33209 26038 26050 47206 47206 0.02358330486470095 SLCLVLYHTF 10 Unmodified _SLCLVLYHTF_ 0 0 0 REV__L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|326|3|anti-sense REV__L1PA5_dup9151|chr13:41042309-41048414:-|13.08469297393608|0.1069683282123004|6.93|151.0|326|3|anti-sense MSMS UPN48_class_I_Rep_3 7 598.3148803710938 2 598.312635 1194.61072 NaN NaN NaN NaN NaN NaN NaN 65.849 1 69.357 68.857 69.857 3.5077 0 0 0 0.53105 1 14912 14912 3.2813 1.4371 1 + 41216 29824 26039 26051 47207 47207 0.021195292937818522 SLCSDCFFCCA 11 Unmodified _SLCSDCFFCCA_ 0 0 0 L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|45|2|anti-sense L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|45|2|anti-sense L1MA5_dup2315|chr8:130100629-130101571:-|3.6679368272598736|0.1777262609089978|4.37|150.0|45|2|anti-sense MSMS UPN47_class_I_Rep_2 3 599.7080688476562 2 599.70543 1197.39631 NaN NaN NaN NaN NaN NaN NaN 118.58 1 122.06 121.56 122.56 3.4822 0 0 0 0.38417 1 29021 29021 1.3295 0.5359 1 41217 9884 26040 26052 47208 47208 -0.1944942518030075 SLDAPHSTY 9 Unmodified _SLDAPHSTY_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS UPN46_class_I_Rep_3 1 495.7302551269531 2 495.729989 989.445425 0.13295 6.5907E-05 0.6482 0.00032133 0.78115 0.00038724 495.7303829111885 33.99 0.50772 33.99 33.737 34.245 0 44 34 2 0 0 0 0.15122 3 5990 5990;6023;6056 25.399 9.5521 1 98134 41218 1164 26041 26053 47209;47210;47211 47209 -0.04971986241525883 SLDAQFQPG 9 Unmodified _SLDAQFQPG_ 0 0 0 REV__ENSG00000105556|ENST00000264819|MIER2 REV__ENSG00000105556|ENST00000264819|MIER2 MULTI-MSMS UPN46_class_I_Rep_3 1 481.73248291015625 2 481.732532 961.45051 0.1988 9.5766E-05 0.019141 9.2207E-06 0.21794 0.00010499 481.7324548803119 53.631 1.3143 53.631 53.19 54.504 0 309 140 3 0 0 0 0.061943 2 11529 11493;11529 43.858 0 1 2286200 + 41219 18294 26042 26054 47212;47213 47213 -0.03175682378889633 SLDEPFLGGR 10 Unmodified _SLDEPFLGGR_ 0 0 0 REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|400|3|anti-sense REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|400|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 545.7801513671875 2 545.780013 1089.54547 0.46135 0.00025179 -0.23632 -0.00012898 0.22503 0.00012281 545.7797879040908 39.574 0.86784 43.079 42.697 43.565 3.5048 184 86 3 0 0 0 0.27684 4 6986 6949;6986;7020;7060 36.127 10.728 1 409280 + 41220 25291 26043 26055 47214;47215;47216;47217 47215 0.0042825109228488145 SLDEPFLGGR 10 Unmodified _SLDEPFLGGR_ 0 0 0 REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|400|3|anti-sense REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|400|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.780029296875 2 545.780013 1089.54547 0.4393 0.00023976 -0.27588 -0.00015057 0.16342 8.919E-05 545.7797700859918 39.221 0.93428 42.951 42.654 43.588 3.7297 197 91 3 0 0 0 0.30832 2 6920 6920;6955 30.637 1.555 1 445290 + 41221 25291 26043 26055 47218;47219 47218 0.0042825109228488145 SLDEPFLGGR 10 Unmodified _SLDEPFLGGR_ 0 0 0 REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|400|3|anti-sense REV__L1MA4A_dup3857|chrX:135311862-135318027:-|3.020928339537393|0.1435033276788876|4.4|151.0|400|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 545.780029296875 2 545.780013 1089.54547 0.38449 0.00020985 -0.29886 -0.00016311 0.085635 4.6738E-05 545.7798171386765 39.258 0.91637 42.914 42.631 43.547 3.6557 191 86 3 0 0 0 0.21664 2 6848 6807;6848 41.84 7.4379 1 401090 + 41222 25291 26043 26055 47220;47221 47221 0.0042825109228488145 SLDGIVRL 8 Unmodified _SLDGIVRL_ 0 0 0 ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP ENST00000494720.5_1_2:219129258-219130297:-|nuORF ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 436.76361083984375 2 436.763635 871.512717 0.0069446 3.0332E-06 -0.085747 -3.7451E-05 -0.078802 -3.4418E-05 436.7635642596742 56.315 0.6573 59.773 59.395 60.052 3.4572 57 35 2 0 0 0 0.82752 2 12849 12809;12849 41.84 9.5341 1 168370 41223 2575 26044 26056 47222;47223 47223 0.071820887600893 SLDGIVRL 8 Unmodified _SLDGIVRL_ 0 0 0 ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP ENST00000494720.5_1_2:219129258-219130297:-|nuORF ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 436.7635803222656 2 436.763635 871.512717 -0.26846 -0.00011726 0.17126 7.4802E-05 -0.0972 -4.2453E-05 436.7636305030105 56.492 0.56394 59.793 59.477 60.041 3.3009 55 33 2 0 0 0 0.82752 3 12881 12881;12926;12977 43.858 3.901 1 142970 41224 2575 26044 26056 47224;47225;47226 47224 0.071820887600893 SLDGIVRL 8 Unmodified _SLDGIVRL_ 0 0 0 ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP ENST00000494720.5_1_2:219129258-219130297:-|nuORF ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 436.7632141113281 2 436.763635 871.512717 -0.4407 -0.00019248 0.55005 0.00024024 0.10934 4.7758E-05 436.76373555865314 56.638 0.51942 59.81 59.498 60.017 3.1721 50 29 2 0 0 0 0.82752 2 13032 13032;13077 56.177 10.156 1 169270 41225 2575 26044 26056 47227;47228 47227 0.071820887600893 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 490.276611328125 2 490.276575 978.538597 0.24177 0.00011853 0.00024286 1.1907E-07 0.24201 0.00011865 490.2767947486475 68.049 0.4004 68.049 67.744 68.144 0 116 38 4 0 0 0 0.0047467 3 15488 15454;15488;15524 136.39 53.863 1 27266000 + 41226 5235 26045 26057 47229;47230;47231 47230 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 490.2766418457031 2 490.276575 978.538597 0.2423 0.0001188 -0.0063721 -3.1241E-06 0.23593 0.00011567 490.27651525865986 68.175 0.22488 68.175 68.136 68.36 0 94 24 4 0 0 0 0.0071659 2 15591 15556;15591 136.39 53.863 1 3450800 + 41227 5235 26045 26057 47232;47233 47233 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 490.276611328125 2 490.276575 978.538597 0.24335 0.00011931 0.1046 5.1281E-05 0.34794 0.00017059 490.2765718041166 68.787 0.44648 68.787 68.481 68.927 0 79 44 2 0 0 0 0.043808 3 15661 15661;15700;15750 51.488 18.043 1 674720 + 41228 5235 26045 26057 47234;47235;47236 47234 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_1 2 490.27655029296875 2 490.276575 978.538597 0.15784 7.7386E-05 0.064975 3.1856E-05 0.22282 0.00010924 490.2765148251913 62.022 1.6372 65.39 64.927 66.564 3.3681 292 114 4 0 0 0 0.006587 8 14519 14479;14519;14555;14594;14635;14685;14731;14775 139.78 53.45 1 2209000 + 41229 5235 26045 26057 47237;47238;47239;47240;47241;47242;47243;47244 47238 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN47_class_I_Rep_1 2 490.2767639160156 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 63.263 1 66.622 66.122 67.122 3.3595 0 0 0 0.13613 1 14957 14957 20.415 2.2682 1 + 41230 5235 26045 26057 47245 47245 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_2 3 490.2766418457031 2 490.276575 978.538597 0.28709 0.00014075 -0.059108 -2.8979E-05 0.22798 0.00011177 490.2764669415583 62.295 1.1269 65.554 65.079 66.206 3.2594 231 74 4 0 0 0 0.0047467 8 14787 14593;14634;14674;14711;14750;14787;14830;14876 125.04 52.07 1 2510200 + 41231 5235 26045 26057 47246;47247;47248;47249;47250;47251;47252;47253 47251 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_2 3 490.27691650390625 2 490.276575 978.538597 0.26867 0.00013172 -0.11401 -5.5896E-05 0.15466 7.5827E-05 490.2763940534699 63.043 0.59616 66.299 66.154 66.751 3.2558 74 41 3 0 0 0 0.10225 1 15007 15007 33.445 4.9504 1 245460 + 41232 5235 26045 26057 47254 47254 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_3 4 490.2767028808594 2 490.276575 978.538597 0.15645 7.6705E-05 0.09623 4.7179E-05 0.25268 0.00012388 490.2765497854635 62.374 1.4044 65.541 65.14 66.544 3.1667 210 90 4 0 0 0 0.0047467 4 14842 14753;14797;14842;14966 114.19 41.218 1 1915200 + 41233 5235 26045 26057 47255;47256;47257;47258 47257 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN47_class_I_Rep_3 4 490.27655029296875 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 62.022 1 65.188 64.688 65.688 3.1667 0 0 0 0.081356 1 14674 14674 28.495 3.5035 1 + 41234 5235 26045 26057 47259 47259 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN47_class_I_Rep_3 4 490.2766418457031 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 62.15 1 65.316 64.816 65.816 3.1667 0 0 0 1.5225E-08 1 14714 14714 75.571 20.068 1 + 41235 5235 26045 26057 47260 47260 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 490.276575 978.538597 0.22812 0.00011184 2.3312 0.0011429 2.5593 0.0012548 490.2765625792317 64.932 0.05571 68.188 68.144 68.2 3.2556 0.0065291 0.0022916 NaN 136.39 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 23743 + 41236 5235 26045 26057 0.04846938211710494 SLDKFLASV 9 Unmodified _SLDKFLASV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 490.276575 978.538597 0.24936 0.00012226 0.53823 0.00026388 0.78759 0.00038614 490.2767306916489 62.177 0.21587 65.688 65.58 65.796 3.5104 0.11256 0.00049563 NaN 125.04 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 67180 + 41237 5235 26045 26057 0.04846938211710494 SLDKFLASVST 11 Unmodified _SLDKFLASVST_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN46_class_I_Rep_3 1 584.3168334960938 2 584.316428 1166.6183 NaN NaN NaN NaN NaN NaN NaN 66.102 1 66.102 65.602 66.602 0 0 0 0 0.31125 1 14980 14980 11.518 5.326 1 + 41238 5235 26046 26058 47261 47261 0.04165960095042465 SLDKFLASVST 11 Unmodified _SLDKFLASVST_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN46_class_I_Rep_3 1 584.3172607421875 2 584.316428 1166.6183 NaN NaN NaN NaN NaN NaN NaN 66.262 1 66.262 65.762 66.762 0 0 0 0 0.089189 1 15025 15025 23.801 7.2352 1 + 41239 5235 26046 26058 47262 47262 0.04165960095042465 SLDQPTQTV 9 Unmodified _SLDQPTQTV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN46_class_I_Rep_3 1 494.750732421875 2 494.750921 987.48729 0.28581 0.0001414 0.35227 0.00017429 0.63808 0.00031569 494.7509315750573 40.864 0.40686 40.864 40.665 41.072 0 60 45 2 0 0 0 0.12795 1 7974 7974 28.495 9.1326 1 232780 41240 5036 26047 26059 47263 47263 -0.0069543055299163825 SLDQPTQTV 9 Unmodified _SLDQPTQTV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MATCH UPN47_class_I_Rep_2 3 2 494.750921 987.48729 -0.1322 -6.5407E-05 -0.21047 -0.00010413 -0.34267 -0.00016954 494.75082073808704 37.764 0.16551 41.152 41.06 41.225 3.3879 0.14412 -0.00035164 NaN 28.495 13 13 2 NaN NaN NaN NaN 0 NaN NaN 0 28224 41241 5036 26047 26059 -0.0069543055299163825 SLDQSTIKIEI 11 Unmodified _SLDQSTIKIEI_ 0 0 0 L1PA15_dup4848|chrX:74018698-74020884:+|1.7658903644444532|0.259032097032445|2.77|151.0|23|1|sense L1PA15_dup4848|chrX:74018698-74020884:+|1.7658903644444532|0.259032097032445|2.77|151.0|23|1|sense L1PA15_dup4848|chrX:74018698-74020884:+|1.7658903644444532|0.259032097032445|2.77|151.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 416.2354736328125 3 416.234487 1245.68163 NaN NaN NaN NaN NaN NaN NaN 104.52 1 108.14 107.64 108.64 3.6247 0 0 0 0.33232 1 25179 25179 5.5233 0 1 41242 13944 26048 26060 47264 47264 0.06861900812305066 SLDRSIAEV 9 Unmodified _SLDRSIAEV_ 0 0 0 REV__DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant REV__DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 495.2671203613281 2 495.266739 988.518924 -0.13195 -6.535E-05 0.65318 0.0003235 0.52123 0.00025815 495.2667000785041 42.609 0.63489 45.848 45.603 46.237 3.2394 61 41 2 0 0 0 0.37599 1 8713 8713 9.3831 0 1 83269 + 41243 17506 26049 26061 47265 47265 0.0242056220096174 SLDVFLRWL 9 Unmodified _SLDVFLRWL_ 0 0 0 ENSG00000165548|ENST00000298351|TMEM63C ENSG00000165548|ENST00000298351|TMEM63C ENSG00000165548|ENST00000298351|TMEM63C MSMS UPN47_class_I_Rep_2 3 574.827392578125 2 574.826766 1147.63898 NaN NaN NaN NaN NaN NaN NaN 32.708 1 36.162 35.662 36.662 3.4547 0 0 0 0.4007 1 5701 5701 0.52476 0 1 41244 4185 26050 26062 47266 47266 0.07106595265395299 SLDVGGPLRY 10 Unmodified _SLDVGGPLRY_ 0 0 0 ENSG00000176894|ENST00000317479|PXMP2 ENSG00000176894|ENST00000317479|PXMP2 ENSG00000176894|ENST00000317479|PXMP2 MSMS UPN47_class_I_Rep_3 4 538.7897338867188 2 538.790381 1075.56621 NaN NaN NaN NaN NaN NaN NaN 52.888 1 56.083 55.583 56.583 3.1948 0 0 0 0.53105 1 11885 11885 11.495 0.6952 1 41245 4770 26051 26063 47267 47267 0.03144841471953441 SLEGALAGLI 10 Unmodified _SLEGALAGLI_ 0 0 0 REV__L1MA4_dup7936|chr13:33892684-33893975:+|1.3623569865753342|0.0128150269538526|6.73|150.0|29|3|sense REV__L1MA4_dup7936|chr13:33892684-33893975:+|1.3623569865753342|0.0128150269538526|6.73|150.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 472.27490234375 2 472.276575 942.538597 -0.20572 -9.7155E-05 -0.47707 -0.00022531 -0.68279 -0.00032246 472.2760831720979 44.02 0.68421 47.715 47.326 48.01 3.6951 92 42 3 0 0 0 0.47413 1 9178 9178 13.906 2.4113 1 199750 + 41246 25210 26052 26064 47268 47268 0.06502938211713172 SLEGEFVSY 9 Unmodified _SLEGEFVSY_ 0 0 0 REV__ENSG00000242372|ENST00000374450|EIF6 REV__ENSG00000242372|ENST00000374450|EIF6 MSMS UPN47_class_I_Rep_2 3 515.73779296875 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 36.576 1 39.975 39.475 40.475 3.3988 0 0 0 0.38478 1 6876 6876 4.3292 0.73274 1 + 41247 21330 26053 26065 47269 47269 -0.048062353015666304 SLEGFFIYLHG 11 Unmodified _SLEGFFIYLHG_ 0 0 0 REV__L1MB4_dup119|chr1:41195297-41197700:+|1.103012061216287|0.0374782170961977|4.88|150.0|120|2|anti-sense REV__L1MB4_dup119|chr1:41195297-41197700:+|1.103012061216287|0.0374782170961977|4.88|150.0|120|2|anti-sense MSMS UPN47_class_I_Rep_1 2 641.8289184570312 2 641.826963 1281.63937 NaN NaN NaN NaN NaN NaN NaN 50.892 1 54.521 54.021 55.021 3.6285 0 0 0 0.38417 1 11199 11199 1.4819 0 1 + 41248 25936 26054 26066 47270 47270 0.009819701945616544 SLEGSHFAE 9 Unmodified _SLEGSHFAE_ 0 0 0 L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|48|3|anti-sense L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|48|3|anti-sense L1MC3_dup4849|chr6:99422962-99423734:+|1.2136913583727371|0.0839903188832695|3.85|151.0|48|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 488.72222900390625 2 488.722164 975.429775 0.21809 0.00010659 -0.17786 -8.6926E-05 0.040227 1.966E-05 488.72191060363235 53.661 0.62698 53.661 53.328 53.955 0 97 67 3 0 0 0 0.13631 2 11551 11551;11586 26.884 5.3467 1 363210 41249 11346 26055 26067 47271;47272 47271 -0.05892272758569561 SLELDKEKI 9 Unmodified _SLELDKEKI_ 0 0 0 REV__nc|ENSG00000066230|P48764-2|SLC9A3 REV__nc|ENSG00000066230|P48764-2|SLC9A3 MULTI-MSMS UPN47_class_I_Rep_1 2 537.80615234375 2 537.805697 1073.59684 0.34754 0.00018691 -0.11712 -6.299E-05 0.23041 0.00012392 537.8055830000739 67.785 0.24848 71.146 70.997 71.246 3.3611 20 15 2 0 0 0 0.10568 1 16341 16341 32.786 0 1 474020 + 41250 17765 26056 26068 47273 47273 0.06298575066330159 SLELDPPSL 9 Unmodified _SLELDPPSL_ 0 0 0 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 MULTI-MSMS UPN47_class_I_Rep_1 2 485.75689697265625 2 485.758215 969.501877 0.11382 5.5289E-05 -0.3941 -0.00019144 -0.28028 -0.00013615 485.7579803640333 65.294 0.45993 68.649 68.352 68.812 3.3557 47 29 2 0 0 0 0.42249 1 15500 15500 6.7232 0 1 65743 41251 16830 26057 26069 47274 47274 0.015906415951349118 SLELDPPSL 9 Unmodified _SLELDPPSL_ 0 0 0 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 MULTI-SECPEP UPN47_class_I_Rep_1 2 486.31744384765625 2 485.758215 969.501877 0.11382 5.5289E-05 -0.3941 -0.00019144 -0.28028 -0.00013615 485.7579803640333 65.294 0.45993 68.649 68.352 68.812 3.3557 47 29 2 0 0 0 0.11309 1 15518 15518 13.906 0 1 65743 41252 16830 26057 26069 47275 47275 0.015906415951349118 SLELDPPSL 9 Unmodified _SLELDPPSL_ 0 0 0 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 MSMS UPN47_class_I_Rep_2 3 485.7573547363281 2 485.758215 969.501877 NaN NaN NaN NaN NaN NaN NaN 65.428 1 68.684 68.184 69.184 3.2556 0 0 0 0.10315 1 15653 15653 24.021 0 1 41253 16830 26057 26069 47276 47276 0.015906415951349118 SLELDPPSL 9 Unmodified _SLELDPPSL_ 0 0 0 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 nc|ENSG00000227011|F2Z3M2|LINC02876 MULTI-SECPEP UPN47_class_I_Rep_3 4 485.8116149902344 2 485.758215 969.501877 0.13737 6.6729E-05 -0.2114 -0.00010269 -0.074025 -3.5958E-05 485.7578584553275 65.458 0.52622 68.637 68.457 68.983 3.1795 49 36 3 0 0 0 0.12099 1 15672 15672 6.7232 0 1 86227 41254 16830 26057 26069 47277 47277 0.015906415951349118 SLELEWPYY 9 Unmodified _SLELEWPYY_ 0 0 0 REV__ENSG00000150628|ENST00000280191|SPATA4 REV__ENSG00000150628|ENST00000280191|SPATA4 MSMS UPN47_class_I_Rep_3 4 599.8086547851562 2 600.284597 1198.55464 NaN NaN NaN NaN NaN NaN NaN 53.803 1 56.997 56.497 57.497 3.1948 0 0 0 0.39428 1 12165 12165 2.0598 0.21551 1 + 41255 19636 26058 26070 47278 47278 -0.03669400342027984 SLELGTLVY 9 Unmodified _SLELGTLVY_ 0 0 0 HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|48|2|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|48|2|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|48|2|sense MSMS UPN47_class_I_Rep_1 2 497.7769470214844 2 497.776408 993.538263 NaN NaN NaN NaN NaN NaN NaN 80.447 1 83.912 83.412 84.412 3.465 0 0 0 0.089203 1 20043 20043 26.884 1.4843 1 41256 8111 26059 26071 47279 47279 0.04123518491860523 SLELQAFRQ 9 Unmodified _SLELQAFRQ_ 0 0 0 REV__nc|ENSG00000198890|Q96LA8-2|PRMT6 REV__nc|ENSG00000198890|Q96LA8-2|PRMT6 MSMS UPN48_class_I_Rep_3 7 546.3058471679688 2 546.29583 1090.57711 NaN NaN NaN NaN NaN NaN NaN 41.877 1 45.522 45.022 46.022 3.6458 0 0 0 0.39518 1 7613 7613 1.8442 0 1 + 41257 21162 26060 26072 47280 47280 0.03544243846226891 SLELRPYGQ 9 Unmodified _SLELRPYGQ_ 0 0 0 REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|19|1|sense REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|19|1|sense MSMS UPN47_class_I_Rep_2 3 531.8009643554688 2 531.782556 1061.55056 NaN NaN NaN NaN NaN NaN NaN 52.294 1 55.628 55.128 56.128 3.3332 0 0 0 0.31276 1 11656 11656 10.074 0 1 + 41258 29511 26061 26073 47281 47281 0.022245549549097632 SLEPDELTEE 10 Unmodified _SLEPDELTEE_ 0 0 0 REV__L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|25|2|sense REV__L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2625122070312 2 581.261516 1160.50848 -0.096578 -5.6137E-05 0.99177 0.00057648 0.89519 0.00052034 581.2619793776555 23.337 0.36539 27.041 26.834 27.199 3.7042 35 33 2 0 0 0 0.56078 1 2867 2867 3.2813 0.54611 1 48873 + 41259 24358 26062 26074 47282 47282 -0.06535510034814251 SLEPEASLL 9 Unmodified _SLEPEASLL_ 0 0 0 ENST00000342607.10_1_12:122213795-122213957:+|nuORF ENST00000342607.10_1_12:122213795-122213957:+|nuORF ENST00000342607.10_1_12:122213795-122213957:+|nuORF MSMS UPN48_class_I_Rep_1 5 479.7572326660156 2 479.758215 957.501877 NaN NaN NaN NaN NaN NaN NaN 69.018 1 72.473 71.973 72.973 3.4548 0 0 0 0.36505 1 15979 15979 7.2892 0 1 41260 6237 26063 26075 47283 47283 0.02142641595139594 SLEPKIKMY 9 Unmodified _SLEPKIKMY_ 0 0 0 L1MEd_dup3665|chr3:17724395-17725677:-|2.4979751009230315|0.0202430785320601|6.95|151.0|67|2|anti-sense L1MEd_dup3665|chr3:17724395-17725677:-|2.4979751009230315|0.0202430785320601|6.95|151.0|67|2|anti-sense L1MEd_dup3665|chr3:17724395-17725677:-|2.4979751009230315|0.0202430785320601|6.95|151.0|67|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.8236694335938 2 554.807185 1107.59982 NaN NaN NaN NaN NaN NaN NaN 55.764 1 59.242 58.742 59.742 3.4785 0 0 0 0.37476 1 12683 12683 6.7232 0.51738 1 41261 13203 26064 26076 47284 47284 0.050321269195137575 SLERIEEEY 9 Unmodified _SLERIEEEY_ 0 0 0 REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 584.280517578125 2 584.280043 1166.54553 -0.030166 -1.7625E-05 0.10061 5.8783E-05 0.070441 4.1157E-05 584.2801668475449 40.087 0.71502 43.754 43.455 44.17 3.6668 123 51 3 0 0 0 0.43982 1 7852 7852 5.7319 0 1 323940 + 41262 22510 26065 26077 47285 47285 -0.03107793698382011 SLERIEEEY 9 Unmodified _SLERIEEEY_ 0 0 0 REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 584.2802124023438 2 584.280043 1166.54553 0.045021 2.6305E-05 0.26136 0.0001527 0.30638 0.00017901 584.2801064723828 40.405 0.75417 43.776 43.513 44.267 3.3712 115 52 3 0 0 0 0.47763 1 8147 8147 2.9952 0 1 287630 + 41263 22510 26065 26077 47286 47286 -0.03107793698382011 SLERIEEEY 9 Unmodified _SLERIEEEY_ 0 0 0 REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF REV__ENST00000473150.1_1_3:87372750-87373125:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 584.2807006835938 2 584.280043 1166.54553 -0.0096882 -5.6606E-06 0.33258 0.00019432 0.32289 0.00018866 584.2800976259564 40.514 0.76446 43.751 43.471 44.236 3.2372 108 48 3 0 0 0 0.43982 2 8062 8062;8227 5.7319 0 1 275600 + 41264 22510 26065 26077 47287;47288 47287 -0.03107793698382011 SLESLTLSY 9 Unmodified _SLESLTLSY_ 0 0 0 ENSG00000132128|ENST00000617190|LRRC41;nc|ENSG00000132128|Q15345-3|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 MULTI-MSMS UPN47_class_I_Rep_3 4 506.7637634277344 2 506.763497 1011.51244 0.25352 0.00012848 -0.12456 -6.3122E-05 0.12896 6.5353E-05 506.76337032324415 69.289 0.41627 72.493 72.251 72.667 3.2044 47 31 2 0 0 0 0.21527 1 16926 16926 19.257 0 1 89334 41265 2733 26066 26078 47289 47289 0.0071462424956507675 SLESLTLSY 9 Unmodified _SLESLTLSY_ 0 0 0 ENSG00000132128|ENST00000617190|LRRC41;nc|ENSG00000132128|Q15345-3|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 ENSG00000132128|ENST00000617190|LRRC41 MULTI-MATCH UPN47_class_I_Rep_2 3 2 506.763497 1011.51244 0.1215 6.1574E-05 -0.060511 -3.0665E-05 0.060993 3.0909E-05 506.7633747269546 69.276 0.3792 72.552 72.38 72.759 3.2761 0.029661 3.8209E-05 NaN 19.257 38 29 2 NaN NaN NaN NaN 0 NaN NaN 0 63192 41266 2733 26066 26078 0.0071462424956507675 SLETLIKVS 9 Unmodified _SLETLIKVS_ 0 0 0 REV__HSMAR2_dup972|chr9:77962916-77964123:+|1.9298430375949964|0.0132024450745926|7.19|151.0|80|3|anti-sense REV__HSMAR2_dup972|chr9:77962916-77964123:+|1.9298430375949964|0.0132024450745926|7.19|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 495.2975769042969 2 495.297507 988.580462 NaN NaN NaN NaN NaN NaN NaN 48.32 1 51.67 51.17 52.17 3.3492 0 0 0 0.39598 1 10436 10436 1.6526 0 1 + 41267 23968 26067 26079 47290 47290 0.08571493900251426 SLETLYYT 8 Unmodified _SLETLYYT_ 0 0 0 REV__L1MA8_dup6552|chrX:136721577-136722075:+|2.2702244136747165|0.0205693260313536|6.79|151.0|37|3|anti-sense REV__L1MA8_dup6552|chrX:136721577-136722075:+|2.2702244136747165|0.0205693260313536|6.79|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_2 3 495.24365234375 2 495.244941 988.475328 NaN NaN NaN NaN NaN NaN NaN 19.5 1 22.897 22.397 23.397 3.3963 0 0 0 0.40625 1 1848 1848 2.3027 0 1 + 41268 25564 26068 26080 47291 47291 -0.019370472961895757 SLEVEKEQL 9 Unmodified _SLEVEKEQL_ 0 0 0 REV__ENSG00000188997|ENST00000340067|KCTD21 REV__ENSG00000188997|ENST00000340067|KCTD21 MSMS UPN47_class_I_Rep_3 4 537.8060302734375 2 537.787504 1073.56045 NaN NaN NaN NaN NaN NaN NaN 68.48 1 71.677 71.177 72.177 3.1977 0 0 0 0.13551 1 16643 16643 20.454 0 1 + 41269 20992 26069 26081 47292 47292 0.02661698169617921 SLEWTSSKF 9 Unmodified _SLEWTSSKF_ 0 0 0 L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|71|3|sense L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|71|3|sense L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|71|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.7688598632812 2 542.769114 1083.52368 0.47894 0.00025996 -0.13993 -7.595E-05 0.33901 0.00018401 542.7691222881497 52.986 0.53535 56.312 56.129 56.665 3.3266 42 29 2 0 0 0 0.31407 1 11853 11853 13.042 2.243 1 65725 41270 14813 26070 26082 47293 47293 -0.014745536562713824 SLEYGGFFFF 10 Unmodified _SLEYGGFFFF_ 0 0 0 REV__ENSG00000120329|ENST00000239451|SLC25A2 REV__ENSG00000120329|ENST00000239451|SLC25A2 MULTI-SECPEP UPN47_class_I_Rep_3 4 404.7920227050781 3 405.19033 1212.54916 -0.67882 -0.00027505 -1.1013 -0.00044625 -1.7801 -0.0007213 405.5246005160097 66.682 0.062904 69.868 69.819 69.882 3.1853 5 3 2 0 0 0 0.84575 1 16088 16088 0.69767 0.53834 1 19873 + 41271 18200 26071 26083 47294 47294 -0.048610791338433046 SLFCKWVS 8 Unmodified _SLFCKWVS_ 0 0 0 ENST00000205061.9_2_16:74481415-74481883:-|nuORF ENST00000205061.9_2_16:74481415-74481883:-|nuORF ENST00000205061.9_2_16:74481415-74481883:-|nuORF MSMS UPN46_class_I_Rep_3 1 484.8337707519531 2 485.246763 968.478974 NaN NaN NaN NaN NaN NaN NaN 73.341 1 73.341 72.841 73.841 0 0 0 0 0.39996 1 16997 16997 7.9102 0 1 41272 5858 26072 26084 47295 47295 -0.006526560033194073 SLFEEMLQV 9 Oxidation (M) _SLFEEM(Oxidation (M))LQV_ SLFEEM(1)LQV SLFEEM(40)LQV 0 0 1 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS UPN47_class_I_Rep_2 3 556.270751953125 2 556.270632 1110.52671 0.42326 0.00023545 0.25444 0.00014154 0.6777 0.00037699 556.2703690242935 71.647 0.66911 74.937 74.695 75.364 3.2899 117 57 3 0 0 0 0.073198 1 17512 17512 40.239 18.702 1 232520 41273 1535 26073 26085 47296 47296 47 -0.024130465938014822 SLFEGIYTI 9 Unmodified _SLFEGIYTI_ 0 0 0 FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;FLT3|F612insF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E598insEYDLKWEF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y599insYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y591insYVDFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREYEYDL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insREYEYDL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V592insVDFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insEYFYVDF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V592insVDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D593insDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E596insEY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D586insDNEYFYVDF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D586insDNEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insSDNEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYEYDLKWEFPRENLE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYEYDLKWEFPRENL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYDLKWEFPRENL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYEYDLKWEFPRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYDLKWEFPRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insSDNEYFYVDFREYEYDLKWEFPRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insSDNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N586insDNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N587insNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N587insNEYFYVDFREYEYDLKWE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E596insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E573insE|na|na|ENSG00000122025|na|na|inframe_insertion;nc|ENSG00000122025|P36888-2|FLT3;FLT3|L576insL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|L601insL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|L610insL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|M578insM|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insS|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N587insN|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E611insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|P606insP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N609insN|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Q575insQ|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Q577insQ|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Q580insQ|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E608insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R607insR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F590insF|na|na|ENSG00000122025|na|na|inframe_insertion;ENSG00000122025|ENST00000241453|FLT3;FLT3|K614insK|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|K602insK|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G613insG|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F605insF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insS|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D600insD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|T582insT|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E598insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V579insV|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V581insV|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D586insD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V592insV|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|W603insW|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y589insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y591insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y597insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y599insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D593insD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E604insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S574insS|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insG|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V581insVTGSSDNEYFYVDFREYEYDLKWEFPRENL|na|na|ENSG00000122025|na|na|inframe_insertion FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion MULTI-MSMS UPN47_class_I_Rep_3 4 521.7761840820312 2 521.776408 1041.53826 0.36247 0.00018913 -0.1426 -7.4403E-05 0.21988 0.00011473 521.7761004766425 84.757 0.4093 88.118 87.801 88.21 3.3615 118 54 3 0 0 0 0.11683 2 21270 21234;21270 30.637 0 1 226450 41274 7777 26074 26086 47297;47298 47298 0.019155184918645318 SLFEGIYTI 9 Unmodified _SLFEGIYTI_ 0 0 0 FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;FLT3|F612insF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E598insEYDLKWEF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y599insYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y591insYVDFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREYEYDL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insREYEYDL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V592insVDFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insEYFYVDF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V592insVDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D593insDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E596insEY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D586insDNEYFYVDF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D586insDNEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insSDNEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYEYDLKWEFPRENLE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYEYDLKWEFPRENL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYDLKWEFPRENL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYEYDLKWEFPRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYDLKWEFPRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insSDNEYFYVDFREYEYDLKWEFPRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insSDNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N586insDNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N587insNEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insEYFYVDFREYEYDLKWEFP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N587insNEYFYVDFREYEYDLKWE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREYEYD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREYE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insGSSDNEYFYVDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFREY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insSSDNEYFYVDFRE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E596insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E588insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E573insE|na|na|ENSG00000122025|na|na|inframe_insertion;nc|ENSG00000122025|P36888-2|FLT3;FLT3|L576insL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|L601insL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|L610insL|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|M578insM|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S584insS|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N587insN|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F594insF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E611insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|P606insP|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|N609insN|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Q575insQ|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Q577insQ|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Q580insQ|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R595insR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E608insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|R607insR|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F590insF|na|na|ENSG00000122025|na|na|inframe_insertion;ENSG00000122025|ENST00000241453|FLT3;FLT3|K614insK|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|K602insK|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G613insG|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|F605insF|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S585insS|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D600insD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|T582insT|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E598insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V579insV|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V581insV|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D586insD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V592insV|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|W603insW|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y589insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y591insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y597insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|Y599insY|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|D593insD|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|E604insE|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|S574insS|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|G583insG|na|na|ENSG00000122025|na|na|inframe_insertion;FLT3|V581insVTGSSDNEYFYVDFREYEYDLKWEFPRENL|na|na|ENSG00000122025|na|na|inframe_insertion FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion MULTI-MATCH UPN47_class_I_Rep_1 2 2 521.776408 1041.53826 0.35916 0.0001874 -0.53443 -0.00027886 -0.17527 -9.1452E-05 521.7759977564833 84.428 0.30042 87.994 87.919 88.219 3.5655 -0.062136 -0.00031816 NaN 30.637 46 37 2 NaN NaN NaN NaN 0 NaN NaN 0 424260 41275 7777 26074 26086 0.019155184918645318 SLFEKGERP 9 Unmodified _SLFEKGERP_ 0 0 0 Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|58|3|sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|58|3|sense Charlie3_dup27|chr2:62054883-62057277:+|3.1000528681677983|0.0928009658712275|5.06|151.0|58|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.7826538085938 2 531.782556 1061.55056 0.29721 0.00015805 0.011877 6.3159E-06 0.30909 0.00016437 531.7823814644987 47.248 0.59982 47.248 46.892 47.492 0 104 59 2 0 0 0 0.42249 1 9807 9807 6.7232 0 1 357400 41276 517 26075 26087 47299 47299 0.022245549549097632 SLFFQIAEA 9 Unmodified _SLFFQIAEA_ 0 0 0 REV__Charlie8_dup785|chr4:86950986-86951219:+|1.0319174586842903|0.0099879411488699|6.69|150.0|8|1|anti-sense REV__Charlie8_dup785|chr4:86950986-86951219:+|1.0319174586842903|0.0099879411488699|6.69|150.0|8|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2695922851562 2 513.26875 1024.52295 0.29986 0.00015391 -0.48815 -0.00025055 -0.1883 -9.6646E-05 513.2683538072187 79.905 0.2925 83.214 82.992 83.285 3.309 51 32 2 0 0 0 0.30034 1 19930 19930 13.906 0 1 96291 + 41277 17403 26076 26088 47300 47300 0.011666516946661432 SLFFSGLML 9 Unmodified _SLFFSGLML_ 0 0 0 L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|189|2|anti-sense L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|189|2|anti-sense L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|189|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 507.8006591796875 2 507.770071 1013.52559 0.22982 0.00011669 -3.0322 -0.0015397 -2.8024 -0.001423 508.26958000376027 56.402 0.17171 59.703 59.651 59.823 3.3009 9 8 2 0 0 0 0.12182 1 12929 12929 5.2307 0 1 66480 41278 14168 26077 26089 47301 47301 0.019367838279663374 SLFGARPGR 9 Unmodified _SLFGARPGR_ 0 0 0 ENST00000307145.3_2_15:31619197-31619260:+|nuORF ENST00000307145.3_2_15:31619197-31619260:+|nuORF ENST00000307145.3_2_15:31619197-31619260:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 480.772216796875 2 480.772326 959.530098 0.10798 5.1912E-05 -0.23975 -0.00011526 -0.13177 -6.3352E-05 480.7720852673862 34.543 0.84552 34.543 34.055 34.9 0 92 61 2 0 0 0 0.097406 3 6143 6143;6191;6227 34.402 5.9627 1 153040 41279 6097 26078 26090 47302;47303;47304 47302 0.04871429085756063 SLFGDKKI 8 Unmodified _SLFGDKKI_ 0 0 0 REV__L1PA8_dup3690|chr7:96698257-96698924:-|1.224909133231948|0.4016005158966708|1.61|151.0|11|2|sense REV__L1PA8_dup3690|chr7:96698257-96698924:-|1.224909133231948|0.4016005158966708|1.61|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 454.2660827636719 2 454.26601 906.517468 -0.037947 -1.7238E-05 0.034671 1.575E-05 -0.0032764 -1.4884E-06 454.2659294164009 57.481 1.3861 60.772 60.407 61.794 3.2912 310 105 4 0 0 0 0.82752 3 13492 13399;13446;13492 38.176 20.415 1 3786600 + 41280 30224 26079 26091 47305;47306;47307 47307 0.06046972902856851 SLFGDKKI 8 Unmodified _SLFGDKKI_ 0 0 0 REV__L1PA8_dup3690|chr7:96698257-96698924:-|1.224909133231948|0.4016005158966708|1.61|151.0|11|2|sense REV__L1PA8_dup3690|chr7:96698257-96698924:-|1.224909133231948|0.4016005158966708|1.61|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 454.26593017578125 2 454.26601 906.517468 -0.28394 -0.00012899 0.26321 0.00011957 -0.020733 -9.4183E-06 454.2660495954167 57.719 1.4729 60.887 60.499 61.972 3.1681 288 104 4 0 0 0 0.82752 1 13537 13537 38.176 1.6694 1 3767000 + 41281 30224 26079 26091 47308 47308 0.06046972902856851 SLFGGLFPR 9 Unmodified _SLFGGLFPR_ 0 0 0 ENSG00000170634|ENST00000607452|ACYP2 ENSG00000170634|ENST00000607452|ACYP2 ENSG00000170634|ENST00000607452|ACYP2 MSMS UPN46_class_I_Rep_3 1 496.8128967285156 2 497.279452 992.544351 NaN NaN NaN NaN NaN NaN NaN 77.123 1 77.123 76.623 77.623 0 0 0 0 0.2408 1 18018 18018 13.906 2.2658 1 41282 4483 26080 26092 47309 47309 0.047780815140413324 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN46_class_I_Rep_3 1 454.2659606933594 2 454.26601 906.517468 0.13096 5.9489E-05 -0.03705 -1.683E-05 0.093907 4.2659E-05 454.26594286320653 63.913 0.59554 63.913 63.758 64.354 0 115 73 2 0 0 0 0.033731 2 14374 14374;14409 55.503 3.8729 1 2469300 41283 4463 26081 26093 47310;47311 47310 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_1 2 454.2658996582031 2 454.26601 906.517468 0.063946 2.9048E-05 -0.06931 -3.1485E-05 -0.0053641 -2.4367E-06 454.2658838119339 57.284 1.8137 60.721 60.329 62.143 3.437 368 138 4 0 0 0 0.0070571 6 13122 13122;13158;13192;13229;13267;13429 86.332 26.258 1 2509700 41284 4463 26081 26093 47312;47313;47314;47315;47316;47317 47312 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_2 3 454.26593017578125 2 454.26601 906.517468 -0.037947 -1.7238E-05 0.034671 1.575E-05 -0.0032764 -1.4884E-06 454.2659294164009 57.481 1.3861 60.772 60.407 61.794 3.2912 310 105 4 0 0 0 0.0070571 3 13248 13248;13287;13363 106.94 28.212 1 3786600 41285 4463 26081 26093 47318;47319;47320 47318 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_3 4 454.2658996582031 2 454.26601 906.517468 -0.28394 -0.00012899 0.26321 0.00011957 -0.020733 -9.4183E-06 454.2660495954167 57.719 1.4729 60.887 60.499 61.972 3.1681 288 104 4 0 0 0 0.0058741 5 13458 13343;13382;13419;13458;13498 106.94 26.258 1 3767000 41286 4463 26081 26093 47321;47322;47323;47324;47325 47324 0.06046972902856851 SLFHPRLI 8 Unmodified _SLFHPRLI_ 0 0 0 REV__L1M7_dup245|chr2:10148174-10149129:-|2.2677303411127294|0.0391696274161171|5.86|151.0|52|2|anti-sense REV__L1M7_dup245|chr2:10148174-10149129:-|2.2677303411127294|0.0391696274161171|5.86|151.0|52|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.7992248535156 2 491.795269 981.575986 0.20562 0.00010112 3.6365 0.0017884 3.8421 0.0018895 491.7971447727939 59.226 0.57115 62.749 62.398 62.969 3.5231 63 37 2 0 0 0 0.82752 2 12808 12808;12860 10.824 0.75 1 222720 + 41287 24734 26082 26094 47326;47327 47326 0.08446074267999393 SLFITQLNR 9 Unmodified _SLFITQLNR_ 0 0 0 REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|47|1|anti-sense REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.3139038085938 2 546.314023 1090.61349 0.46585 0.0002545 -0.49771 -0.00027191 -0.031859 -1.7405E-05 546.3136228628745 39.322 0.85344 42.827 42.51 43.364 3.5048 144 83 2 0 0 0 0.11683 2 6934 6895;6934 30.637 3.7529 1 269230 + 41288 26047 26083 26095 47328;47329 47329 0.07181120742939129 SLFITQLNR 9 Unmodified _SLFITQLNR_ 0 0 0 REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|47|1|anti-sense REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.3139038085938 2 546.314023 1090.61349 0.4409 0.00024087 -0.53914 -0.00029454 -0.098238 -5.3669E-05 546.3136776376964 38.968 0.95019 42.698 42.434 43.384 3.7297 147 91 2 0 0 0 0.074399 1 6881 6881 39.95 3.8227 1 283070 + 41289 26047 26083 26095 47330 47330 0.07181120742939129 SLFITQLNR 9 Unmodified _SLFITQLNR_ 0 0 0 REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|47|1|anti-sense REV__L1MB5_dup2376|chr5:133079127-133080135:-|1.6988185441854435|0.0390470178460428|5.44|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.31396484375 2 546.314023 1090.61349 0.37738 0.00020617 -0.55599 -0.00030374 -0.17861 -9.7577E-05 546.3135781610034 39.087 0.75958 42.743 42.451 43.211 3.6557 140 69 3 0 0 0 0.061943 1 6819 6819 43.858 1.5458 1 289570 + 41290 26047 26083 26095 47331 47331 0.07181120742939129 SLFKDGKL 8 Unmodified _SLFKDGKL_ 0 0 0 ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENSG00000144591|ENST00000313597|GMPPA ENSG00000144591|ENST00000313597|GMPPA MULTI-MSMS UPN47_class_I_Rep_1 2 454.2658996582031 2 454.26601 906.517468 0.063946 2.9048E-05 -0.06931 -3.1485E-05 -0.0053641 -2.4367E-06 454.2658838119339 57.284 1.8137 60.721 60.329 62.143 3.437 368 138 4 0 0 0 0.82752 3 13307 13307;13349;13389 27.629 0 1 2509700 41291 3363 26084 26096 47332;47333;47334 47332 0.06046972902856851 SLFKDGKL 8 Unmodified _SLFKDGKL_ 0 0 0 ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENSG00000144591|ENST00000313597|GMPPA ENSG00000144591|ENST00000313597|GMPPA MSMS UPN47_class_I_Rep_2 3 454.2797546386719 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 58.927 1 62.209 61.709 62.709 3.2818 0 0 0 0.38667 1 13678 13678 13.042 0 1 41292 3363 26084 26096 47335 47335 0.06046972902856851 SLFKDGKL 8 Unmodified _SLFKDGKL_ 0 0 0 ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA ENSG00000144591|ENST00000313597|GMPPA ENSG00000144591|ENST00000313597|GMPPA MULTI-MSMS UPN47_class_I_Rep_3 4 454.2658386230469 2 454.26601 906.517468 -0.28394 -0.00012899 0.26321 0.00011957 -0.020733 -9.4183E-06 454.2660495954167 57.719 1.4729 60.887 60.499 61.972 3.1681 288 104 4 0 0 0 0.82752 2 13617 13580;13617 27.629 0 1 3767000 41293 3363 26084 26096 47336;47337 47337 0.06046972902856851 SLFKKGRF 8 Unmodified _SLFKKGRF_ 0 0 0 REV__L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|14|1|sense REV__L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 491.7956848144531 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 68.455 1 71.906 71.406 72.406 3.4517 0 0 0 0.40643 1 15808 15808 2.0598 1.2661 1 + 41294 30576 26085 26097 47338 47338 0.08446074267999393 SLFKRRKS 8 Unmodified _SLFKRRKS_ 0 0 0 ENST00000596960.1_1:149575565-149575637:+|nuORF ENST00000596960.1_1:149575565-149575637:+|nuORF ENST00000596960.1_1:149575565-149575637:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.3182678222656 2 511.3169 1020.61925 NaN NaN NaN NaN NaN NaN NaN 72.259 1 75.823 75.323 76.323 3.5645 0 0 0 0.40659 1 16900 16900 1.8442 0 1 41295 7646 26086 26098 47339 47339 0.10976264045280004 SLFLNIPSV 9 Unmodified _SLFLNIPSV_ 0 0 0 REV__THE1B_dup15455|chr11:128712460-128712800:-|2.355912279661424|0.0343116007607797|6.1|151.0|15|3|sense REV__THE1B_dup15455|chr11:128712460-128712800:-|2.355912279661424|0.0343116007607797|6.1|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 495.79608154296875 2 495.286943 988.559333 0.17155 8.4964E-05 -0.18099 -8.9641E-05 -0.0094424 -4.6767E-06 495.28684241724585 61.667 1.0781 65.035 64.655 65.733 3.3681 182 79 3 0 0 0 0.26468 1 14648 14648 16.149 0 1 783110 + 41296 32227 26087 26099 47340 47340 0.06459528591381059 SLFLNIPSV 9 Unmodified _SLFLNIPSV_ 0 0 0 REV__THE1B_dup15455|chr11:128712460-128712800:-|2.355912279661424|0.0343116007607797|6.1|151.0|15|3|sense REV__THE1B_dup15455|chr11:128712460-128712800:-|2.355912279661424|0.0343116007607797|6.1|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.2868957519531 2 495.286943 988.559333 0.26614 0.00013181 -0.20361 -0.00010084 0.062532 3.0971E-05 495.28678618344367 62.068 1.2937 65.328 64.885 66.179 3.2594 148 85 2 0 0 0 0.26468 2 14721 14721;14774 16.149 0 1 974740 + 41297 32227 26087 26099 47341;47342 47341 0.06459528591381059 SLFLNIPSV 9 Unmodified _SLFLNIPSV_ 0 0 0 REV__THE1B_dup15455|chr11:128712460-128712800:-|2.355912279661424|0.0343116007607797|6.1|151.0|15|3|sense REV__THE1B_dup15455|chr11:128712460-128712800:-|2.355912279661424|0.0343116007607797|6.1|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.2867736816406 2 495.286943 988.559333 0.17252 8.5447E-05 -0.18307 -9.0673E-05 -0.010553 -5.2267E-06 495.28683422719524 62.157 1.1613 65.323 64.829 65.99 3.1667 143 75 2 0 0 0 0.26468 1 14817 14817 16.149 0 1 709660 + 41298 32227 26087 26099 47343 47343 0.06459528591381059 SLFLQMFRCV 10 Unmodified _SLFLQMFRCV_ 0 0 0 LTR12__dup296|chr9:76477879-76478576:+|1.0880195527590857|0.091939763216272|3.56|151.0|41|3|anti-sense;LTR12__dup19|chr1:145795038-145795629:-|1.405143696723284|0.0376467023013224|5.22|151.0|35|3|anti-sense;LTR12__dup295|chr9:36458143-36458789:+|2.5739065401540797|0.0098830110115437|8.02|150.0|29|2|anti-sense;LTR12D_dup390|chr12:119396849-119398589:-|3.588997948600156|0.0174192305017456|7.69|149.0|38|1|anti-sense LTR12__dup296|chr9:76477879-76478576:+|1.0880195527590857|0.091939763216272|3.56|151.0|41|3|anti-sense LTR12__dup296|chr9:76477879-76478576:+|1.0880195527590857|0.091939763216272|3.56|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_1 2 622.3198852539062 2 622.319937 1242.62532 NaN NaN NaN NaN NaN NaN NaN 69.765 1 73.133 72.633 73.633 3.3678 0 0 0 0.53105 1 16922 16922 1.4819 0 1 41299 15522 26088 26100 47344 47344 0.013712781702452048 SLFLVSLK 8 Unmodified _SLFLVSLK_ 0 0 0 HAL1ME_dup4083|chr7:130101995-130102539:+|1.411863208849623|0.0685893351201503|4.36|151.0|24|1|anti-sense HAL1ME_dup4083|chr7:130101995-130102539:+|1.411863208849623|0.0685893351201503|4.36|151.0|24|1|anti-sense HAL1ME_dup4083|chr7:130101995-130102539:+|1.411863208849623|0.0685893351201503|4.36|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 58.837 1 62.003 61.503 62.503 3.1658 0 0 0 0.39819 1 13702 13702 8.5933 0 1 41300 7961 26089 26101 47345 47345 0.1020473394231658 SLFPAELAL 9 Unmodified _SLFPAELAL_ 0 0 0 ENSG00000165832|ENST00000298746|TRUB1 ENSG00000165832|ENST00000298746|TRUB1 ENSG00000165832|ENST00000298746|TRUB1 MULTI-MSMS UPN47_class_I_Rep_1 2 480.77392578125 2 480.773668 959.532783 0.20609 9.9084E-05 -0.035066 -1.6859E-05 0.17103 8.2225E-05 480.7734816596006 87.48 0.21892 91.117 90.976 91.195 3.6372 36 25 2 0 0 0 0.082592 2 21848 21848;21867 37.974 11.09 1 91038 41301 4205 26090 26102 47346;47347 47346 0.05139839700018456 SLFPAELAL 9 Unmodified _SLFPAELAL_ 0 0 0 ENSG00000165832|ENST00000298746|TRUB1 ENSG00000165832|ENST00000298746|TRUB1 ENSG00000165832|ENST00000298746|TRUB1 MSMS UPN47_class_I_Rep_1 2 480.7738037109375 2 480.773668 959.532783 NaN NaN NaN NaN NaN NaN NaN 87.305 1 90.942 90.442 91.442 3.6372 0 0 0 0.2408 1 21813 21813 13.906 3.0821 1 41302 4205 26090 26102 47348 47348 0.05139839700018456 SLFPAVWVL 9 Unmodified _SLFPAVWVL_ 0 0 0 REV__L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|330|3|anti-sense REV__L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|330|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.2996215820312 2 516.299853 1030.58515 NaN NaN NaN NaN NaN NaN NaN 59.617 1 63.097 62.597 63.597 3.4801 0 0 0 0.38478 1 13115 13115 4.3292 0 1 + 41303 30171 26091 26103 47349 47349 0.07108422833653094 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_1 2 495.2869873046875 2 495.286943 988.559333 0.17155 8.4964E-05 -0.18099 -8.9641E-05 -0.0094424 -4.6767E-06 495.28684241724585 61.667 1.0781 65.035 64.655 65.733 3.3681 182 79 3 0 0 0 0.12795 2 14459 14459;14497 28.495 5.7582 1 783110 41304 4803 26092 26104 47350;47351 47350 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_2 3 495.2870178222656 2 495.286943 988.559333 0.26614 0.00013181 -0.20361 -0.00010084 0.062532 3.0971E-05 495.28678618344367 62.068 1.2937 65.328 64.885 66.179 3.2594 148 85 2 0 0 0 0.029742 3 14596 14557;14596;14633 57.249 22.847 1 974740 41305 4803 26092 26104 47352;47353;47354 47353 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_3 4 495.2869567871094 2 495.286943 988.559333 0.17252 8.5447E-05 -0.18307 -9.0673E-05 -0.010553 -5.2267E-06 495.28683422719524 62.157 1.1613 65.323 64.829 65.99 3.1667 143 75 2 0 0 0 0.079935 2 14706 14667;14706 38.615 4.487 1 709660 41306 4803 26092 26104 47355;47356 47356 0.0645952859136969 SLFPIKAWV 9 Unmodified _SLFPIKAWV_ 0 0 0 REV__L1MA2_dup6801|chr16:72448444-72453702:-|4.205578860034894|0.0247959549660819|7.41|151.0|105|2|sense REV__L1MA2_dup6801|chr16:72448444-72453702:-|4.205578860034894|0.0247959549660819|7.41|151.0|105|2|sense MSMS UPN47_class_I_Rep_3 4 530.8501586914062 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 111.89 1 115.41 114.91 115.91 3.5207 0 0 0 0.39428 1 27474 27474 2.0598 0.86641 1 + 41307 24937 26093 26105 47357 47357 0.08428111724970222 SLFPRQFV 8 Unmodified _SLFPRQFV_ 0 0 0 ENST00000471788.1_1_2:207651391-207655428:+|nuORF ENST00000471788.1_1_2:207651391-207655428:+|nuORF ENST00000471788.1_1_2:207651391-207655428:+|nuORF MSMS UPN46_class_I_Rep_3 1 497.2796325683594 2 497.279452 992.544351 NaN NaN NaN NaN NaN NaN NaN 76.954 1 76.954 76.454 77.454 0 0 0 0 0.40625 1 17969 17969 2.3027 0 1 41308 6928 26094 26106 47358 47358 0.047780815140413324 SLFPSLPLL 9 Unmodified _SLFPSLPLL_ 0 0 0 ENSG00000165471|ENST00000674931|MBL2 ENSG00000165471|ENST00000674931|MBL2 ENSG00000165471|ENST00000674931|MBL2 MULTI-MSMS UPN47_class_I_Rep_1 2 494.2975158691406 2 493.799686 985.584819 0.17964 8.8706E-05 -2.7244 -0.0013453 -2.5448 -0.0012566 493.8008987058098 78.232 0.56379 81.661 81.376 81.94 3.4289 130 55 3 0 0 0 0.45688 1 19430 19430 4.756 0 1 225320 41309 4181 26095 26107 47359 47359 0.09145003113803796 SLFPSLPLL 9 Unmodified _SLFPSLPLL_ 0 0 0 ENSG00000165471|ENST00000674931|MBL2 ENSG00000165471|ENST00000674931|MBL2 ENSG00000165471|ENST00000674931|MBL2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 493.799686 985.584819 0.3136 0.00015485 0.97688 0.00048239 1.2905 0.00063724 493.8008462336071 78.062 0.044617 81.405 81.371 81.416 3.3428 -0.1283 0.0035719 NaN 4.756 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 86355 41310 4181 26095 26107 0.09145003113803796 SLFQVLSTY 9 Unmodified _SLFQVLSTY_ 0 0 0 REV__L1MD2_dup99|chr1:39056364-39057273:+|2.428890464619084|0.2557889756236784|3.25|151.0|21|2|sense REV__L1MD2_dup99|chr1:39056364-39057273:+|2.428890464619084|0.2557889756236784|3.25|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2820434570312 2 529.281857 1056.54916 0.3171 0.00016783 0.42042 0.00022252 0.73752 0.00039036 529.2819171462961 47.391 0.73815 51.128 50.778 51.516 3.7361 113 67 2 0 0 0 0.11355 1 9316 9316 31.268 0 1 350330 + 41311 27464 26096 26108 47360 47360 0.02314920866160719 SLFRKKGF 8 Unmodified _SLFRKKGF_ 0 0 0 REV__Tigger1_dup10072|chr14:60901044-60902224:+|1.0641931756838956|0.0444148458158234|4.58|151.0|14|2|sense REV__Tigger1_dup10072|chr14:60901044-60902224:+|1.0641931756838956|0.0444148458158234|4.58|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 491.7976379394531 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 61.461 1 61.461 60.961 61.961 0 0 0 0 0.40364 1 13679 13679 5.7604 0 1 + 41312 32318 26097 26109 47361 47361 0.08446074267999393 SLFRKKGF 8 Unmodified _SLFRKKGF_ 0 0 0 REV__Tigger1_dup10072|chr14:60901044-60902224:+|1.0641931756838956|0.0444148458158234|4.58|151.0|14|2|sense REV__Tigger1_dup10072|chr14:60901044-60902224:+|1.0641931756838956|0.0444148458158234|4.58|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 491.7960510253906 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 46.649 1 49.893 49.393 50.393 3.2439 0 0 0 0.40404 1 9999 9999 5.2307 2.6532 1 + 41313 32318 26097 26109 47362 47362 0.08446074267999393 SLFRPFAY 8 Unmodified _SLFRPFAY_ 0 0 0 L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|74|2|anti-sense L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|74|2|anti-sense L1MA5_dup3783|chr15:49309906-49311161:-|1.1431215907150611|0.1034957909818061|3.47|150.0|74|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7530822753906 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 62.227 1 65.595 65.095 66.095 3.3681 0 0 0 0.39624 1 14646 14646 9.3474 0 1 41314 9907 26098 26110 47363 47363 0.018023926226987896 SLFRSSSNI 9 Unmodified _SLFRSSSNI_ 0 0 0 REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|95|3|anti-sense REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|95|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 505.76690673828125 2 505.766906 1009.51926 0.20924 0.00010582 -0.23559 -0.00011915 -0.026356 -1.333E-05 505.76667065184387 46.211 0.98137 49.731 49.337 50.318 3.5192 143 65 3 0 0 0 0.17979 2 8926 8926;9074 22.658 0 1 489660 + 41315 26267 26099 26111 47364;47365 47364 0.014879819208090339 SLFRSSSNI 9 Unmodified _SLFRSSSNI_ 0 0 0 REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|95|3|anti-sense REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|95|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 505.7666931152344 2 505.766906 1009.51926 0.21742 0.00010996 -0.24188 -0.00012234 -0.024462 -1.2372E-05 505.7667260064603 45.885 0.97851 49.643 49.28 50.258 3.7579 150 67 3 0 0 0 0.19092 2 8997 8997;9039 21.59 0 1 509180 + 41316 26267 26099 26111 47366;47367 47366 0.014879819208090339 SLFRSSSNI 9 Unmodified _SLFRSSSNI_ 0 0 0 REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|95|3|anti-sense REV__L1MB7_dup4411|chr3:88101107-88102538:-|1.1557033653713158|0.0391715314890572|4.88|151.0|95|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 505.76666259765625 2 505.766906 1009.51926 0.19103 9.6619E-05 -0.16296 -8.2418E-05 0.028079 1.4201E-05 505.76676109379605 46.103 0.84732 49.739 49.413 50.26 3.6369 139 55 3 0 0 0 0.41587 1 9016 9016 7.1017 0 1 556440 + 41317 26267 26099 26111 47368 47368 0.014879819208090339 SLFSKRLYF 9 Unmodified _SLFSKRLYF_ 0 0 0 REV__L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|114|3|anti-sense REV__L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|114|3|anti-sense MSMS UPN48_class_I_Rep_2 6 580.8280029296875 2 580.826766 1159.63898 NaN NaN NaN NaN NaN NaN NaN 51.221 1 54.889 54.389 55.389 3.6679 0 0 0 0.38639 1 10536 10536 3.9444 1.2092 1 + 41318 26848 26100 26112 47369 47369 0.06554595265356511 SLFTEGHTDI 10 Unmodified _SLFTEGHTDI_ 0 0 0 REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF MSMS UPN46_class_I_Rep_3 1 560.2714233398438 2 560.269478 1118.5244 NaN NaN NaN NaN NaN NaN NaN 92.299 1 92.299 91.799 92.799 0 0 0 0 0.46538 1 22332 22332 62.573 24.599 1 + 41319 17795 26101 26113 47370 47370 -0.03011759007222281 SLFTEGHTDI 10 Unmodified _SLFTEGHTDI_ 0 0 0 REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF MSMS UPN46_class_I_Rep_3 1 560.2711791992188 2 560.269478 1118.5244 NaN NaN NaN NaN NaN NaN NaN 92.451 1 92.451 91.951 92.951 0 0 0 0 0.46538 1 22374 22374 62.573 18.714 1 + 41320 17795 26101 26113 47371 47371 -0.03011759007222281 SLFTEGHTDI 10 Unmodified _SLFTEGHTDI_ 0 0 0 REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF MSMS UPN47_class_I_Rep_3 4 560.2711791992188 2 560.269478 1118.5244 NaN NaN NaN NaN NaN NaN NaN 87.715 1 91.103 90.603 91.603 3.3873 0 0 0 0.53105 1 21987 21987 3.2813 0.54611 1 + 41321 17795 26101 26113 47372 47372 -0.03011759007222281 SLFTLTLI 8 Unmodified _SLFTLTLI_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 454.2658996582031 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 56.956 1 60.414 59.914 60.914 3.4572 0 0 0 0.39624 1 13048 13048 9.3474 0 1 + 41322 31353 26102 26114 47373 47373 0.08561027705434299 SLFTLTLI 8 Unmodified _SLFTLTLI_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 454.26593017578125 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 57.083 1 60.54 60.04 61.04 3.4572 0 0 0 0.39624 1 13086 13086 9.3474 0 1 + 41323 31353 26102 26114 47374 47374 0.08561027705434299 SLFTLTLI 8 Unmodified _SLFTLTLI_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 454.2657165527344 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 57.275 1 60.566 60.066 61.066 3.2912 0 0 0 0.40404 1 13176 13176 5.2307 0 1 + 41324 31353 26102 26114 47375 47375 0.08561027705434299 SLFTLTLI 8 Unmodified _SLFTLTLI_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 454.2659606933594 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 57.395 1 60.686 60.186 61.186 3.2912 0 0 0 0.39624 1 13213 13213 9.3474 0 1 + 41325 31353 26102 26114 47376 47376 0.08561027705434299 SLFTLTLI 8 Unmodified _SLFTLTLI_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 454.265869140625 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 57.418 1 60.586 60.086 61.086 3.1681 0 0 0 0.40404 1 13267 13267 5.2307 0 1 + 41326 31353 26102 26114 47377 47377 0.08561027705434299 SLFTLTLI 8 Unmodified _SLFTLTLI_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 454.2659912109375 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 57.545 1 60.713 60.213 61.213 3.1681 0 0 0 0.39624 1 13307 13307 9.3474 0 1 + 41327 31353 26102 26114 47378 47378 0.08561027705434299 SLFVSSALFSF 11 Unmodified _SLFVSSALFSF_ 0 0 0 REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|99|3|anti-sense REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|99|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 602.815185546875 2 602.816064 1203.61758 0.40766 0.00024575 0.24856 0.00014983 0.65622 0.00039558 602.8160823064402 62.659 0.96102 66.018 65.606 66.567 3.3595 174 63 4 0 0 0 0.65559 1 14930 14930 2.7352 2.7352 1 574850 + 41328 25020 26103 26115 47379 47379 0.02391165445965271 SLFVSSALFSF 11 Unmodified _SLFVSSALFSF_ 0 0 0 REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|99|3|anti-sense REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|99|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 602.8169555664062 2 602.816064 1203.61758 0.54268 0.00032713 0.099652 6.0072E-05 0.64233 0.00038721 602.8159229859825 63.733 0.064854 67.191 67.131 67.196 3.4578 7 4 2 0 0 0 0.65559 1 14369 14369 2.7352 0 1 61116 + 41329 25020 26103 26115 47380 47380 0.02391165445965271 SLFVSSALFSF 11 Unmodified _SLFVSSALFSF_ 0 0 0 REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|99|3|anti-sense REV__L1MA3_dup3345|chr6:38315148-38316998:-|2.02776628484909|0.0193817195362325|6.71|151.0|99|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 602.8161010742188 2 602.816064 1203.61758 0.53386 0.00032182 0.076179 4.5922E-05 0.61004 0.00036774 602.8160269108029 62.936 1.1055 66.41 65.893 66.999 3.4738 270 83 4 0 0 0 0.61292 1 14269 14269 4.897 2.1618 1 3095300 + 41330 25020 26103 26115 47381 47381 0.02391165445965271 SLFWYWYH 8 Unmodified _SLFWYWYH_ 0 0 0 L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|333|3|anti-sense L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|333|3|anti-sense L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|333|3|anti-sense MSMS UPN47_class_I_Rep_1 2 601.2758178710938 2 601.276909 1200.53927 NaN NaN NaN NaN NaN NaN NaN 78.74 1 82.186 81.686 82.686 3.4456 0 0 0 0.40738 1 19587 19587 0.79363 0.19213 1 41331 14944 26104 26116 47382 47382 -0.052982223485742 SLGCDFSPLSI 11 Unmodified _SLGCDFSPLSI_ 0 0 0 REV__L1MC4a_dup3977|chr6:144000952-144002204:+|1.2782981505402595|0.0235435390344177|5.76|151.0|26|2|sense REV__L1MC4a_dup3977|chr6:144000952-144002204:+|1.2782981505402595|0.0235435390344177|5.76|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.7760009765625 2 569.776082 1137.53761 0.39719 0.00022631 -0.2296 -0.00013082 0.16758 9.5485E-05 569.7756279113563 56.384 0.69375 59.556 59.266 59.959 3.1721 89 42 3 0 0 0 0.48412 1 12923 12923 8.1555 0 1 99351 + 41332 26990 26105 26117 47383 47383 -0.025656442194986084 SLGDTLDLFY 10 Unmodified _SLGDTLDLFY_ 0 0 0 REV__L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|191|1|anti-sense REV__L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|191|1|anti-sense MSMS UPN47_class_I_Rep_2 3 572.2653198242188 2 572.282054 1142.54956 NaN NaN NaN NaN NaN NaN NaN 47.077 1 50.428 49.928 50.928 3.3515 0 0 0 0.53105 1 10075 10075 6.2058 0 1 + 41333 30705 26106 26118 47384 47384 -0.016017042046769348 SLGFKRFK 8 Unmodified _SLGFKRFK_ 0 0 0 ENSG00000164603|ENST00000297145|BMT2 ENSG00000164603|ENST00000297145|BMT2 ENSG00000164603|ENST00000297145|BMT2 MULTI-MSMS UPN48_class_I_Rep_3 7 491.7952575683594 2 491.795269 981.575986 0.25858 0.00012717 1.2257 0.00060277 1.4842 0.00072994 491.795738334399 62.842 0.25869 66.351 66.299 66.558 3.5091 29 18 2 0 0 0 0.82752 1 14056 14056 2.3027 0 1 69552 41334 4120 26107 26119 47385 47385 0.08446074267999393 SLGHSWTM 8 Unmodified _SLGHSWTM_ 0 0 0 REV__ENSG00000206073|ENST00000341074|SERPINB4 REV__ENSG00000206073|ENST00000341074|SERPINB4 MULTI-MSMS UPN47_class_I_Rep_1 2 459.71075439453125 2 459.710545 917.406537 0.20152 9.2639E-05 0.040965 1.8832E-05 0.24248 0.00011147 459.7106170408596 96.606 1.3609 100.38 100.1 101.46 3.7767 433 186 3 0 0 0 0.82752 1 23976 23976 5.2307 5.2307 1 9390200 + 41335 21228 26108 26120 47386 47386 -0.05546990076879865 SLGLACQPGVL 11 Unmodified _SLGLACQPGVL_ 0 0 0 ENST00000377387.5_1_11:64532303-64532546:-|nuORF ENST00000377387.5_1_11:64532303-64532546:-|nuORF ENST00000377387.5_1_11:64532303-64532546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 529.2896118164062 2 529.289159 1056.56377 0.32429 0.00017164 0.57665 0.00030521 0.90094 0.00047686 529.2894787835969 64.329 0.29734 67.685 67.577 67.874 3.3557 43 32 2 0 0 0 0.2728 1 15270 15270 20.415 1.0526 1 146130 41336 6459 26109 26121 47387 47387 0.037746697426428 SLGLFVFTIRV 11 Unmodified _SLGLFVFTIRV_ 0 0 0 L1M1_dup1696|chr3:113682357-113683464:-|1.5062729994288715|0.0266128273874248|5.82|151.0|17|2|sense L1M1_dup1696|chr3:113682357-113683464:-|1.5062729994288715|0.0266128273874248|5.82|151.0|17|2|sense L1M1_dup1696|chr3:113682357-113683464:-|1.5062729994288715|0.0266128273874248|5.82|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 626.379638671875 2 626.376623 1250.73869 NaN NaN NaN NaN NaN NaN NaN 102.21 1 102.21 101.71 102.71 0 0 0 0 0.38417 1 24941 24941 1.3295 0 1 41337 8493 26110 26122 47388 47388 0.123354128793153 SLGLGESLYI 10 Unmodified _SLGLGESLYI_ 0 0 0 nc|ENSG00000062524|P29376-2|LTK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK nc|ENSG00000062524|P29376-2|LTK nc|ENSG00000062524|P29376-2|LTK MSMS UPN47_class_I_Rep_1 2 526.286376953125 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 53.721 1 57.249 56.749 57.749 3.5278 0 0 0 0.53105 1 12059 12059 9.3831 0 1 41338 975 26111 26123 47389 47389 0.03646903520575506 SLGLVVPGPD 10 Unmodified _SLGLVVPGPD_ 0 0 0 REV__ENST00000374837.7_1_20:33147798-33147972:+|nuORF REV__ENST00000374837.7_1_20:33147798-33147972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 477.26898193359375 2 477.26875 952.522947 0.10445 4.9849E-05 -0.85797 -0.00040948 -0.75352 -0.00035963 477.2682780681298 107.79 0.19818 111.42 111.36 111.56 3.6313 22 14 2 0 0 0 0.52083 1 25996 25996 9.3831 0 1 4634400 + 41339 22004 26112 26124 47390 47390 0.044786516946601296 SLGLVVPGPD 10 Unmodified _SLGLVVPGPD_ 0 0 0 REV__ENST00000374837.7_1_20:33147798-33147972:+|nuORF REV__ENST00000374837.7_1_20:33147798-33147972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 477.26702880859375 2 477.26875 952.522947 0.21623 0.0001032 -1.4475 -0.00069083 -1.2312 -0.00058763 477.26786340262083 107.78 0.10475 111.47 111.41 111.51 3.6813 15 9 2 0 0 0 0.52083 1 25445 25445 9.3831 0.63772 1 4486900 + 41340 22004 26112 26124 47391 47391 0.044786516946601296 SLGQGKSDVV 10 Unmodified _SLGQGKSDVV_ 0 0 0 nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1 nc|ENSG00000138386|Q13506-2|NAB1 nc|ENSG00000138386|Q13506-2|NAB1 MULTI-MSMS UPN47_class_I_Rep_1 2 495.2668762207031 2 495.266739 988.518924 -0.20869 -0.00010336 0.46059 0.00022812 0.2519 0.00012476 495.2667775230529 42.079 0.59589 45.759 45.476 46.071 3.6792 61 40 2 0 0 0 0.53794 1 8470 8470 7.1017 1.3699 1 107760 41341 3086 26113 26125 47392 47392 0.024205622009503713 SLGQPHIAY 9 Unmodified _SLGQPHIAY_ 0 0 0 ENSG00000123609|ENST00000243346|NMI ENSG00000123609|ENST00000243346|NMI ENSG00000123609|ENST00000243346|NMI MULTI-MSMS UPN46_class_I_Rep_3 1 493.25946044921875 2 493.258717 984.50288 0.26466 0.00013055 -0.52608 -0.00025949 -0.26142 -0.00012895 493.2584593219461 46.869 0.34378 46.869 46.782 47.125 0 37 33 2 0 0 0 0.16559 1 9641 9641 24.021 4.7636 1 95382 41342 2432 26114 26126 47393 47393 0.010009007546955218 SLGQSFYDY 9 Unmodified _SLGQSFYDY_ 0 0 0 nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 nc|ENSG00000143376|Q96L92-2|SNX27 MULTI-MSMS UPN47_class_I_Rep_1 2 540.2373657226562 2 540.237647 1078.46074 0.020509 1.1079E-05 0.20465 0.00011056 0.22515 0.00012164 540.2375698036926 41.522 0.70285 45.201 44.927 45.63 3.6792 107 49 3 0 0 0 0.35081 1 8377 8377 10.824 1.4408 1 163570 41343 3294 26115 26127 47394 47394 -0.0753511944433285 SLGRFEITV 9 Unmodified _SLGRFEITV_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS UPN47_class_I_Rep_1 2 511.2867431640625 2 511.287474 1020.5604 0.26562 0.00013581 -0.17984 -9.1952E-05 0.085776 4.3856E-05 511.287314437519 59.296 0.66941 62.713 62.394 63.063 3.4171 81 47 2 0 0 0 0.26468 1 13772 13772 16.149 0.30192 1 224380 41344 1076 26116 26128 47395 47395 0.05093742960286818 SLGRFEITV 9 Unmodified _SLGRFEITV_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS UPN47_class_I_Rep_2 3 511.28741455078125 2 511.287474 1020.5604 0.18622 9.5212E-05 -0.067302 -3.4411E-05 0.11892 6.0801E-05 511.287406521301 59.605 0.75656 62.878 62.5 63.257 3.2731 89 50 2 0 0 0 0.20317 2 13856 13856;13942 20.415 2.2682 1 240070 41345 1076 26116 26128 47396;47397 47396 0.05093742960286818 SLGRFEITV 9 Unmodified _SLGRFEITV_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS UPN47_class_I_Rep_3 4 511.28741455078125 2 511.287474 1020.5604 0.18203 9.3068E-05 -0.037406 -1.9125E-05 0.14462 7.3943E-05 511.2874060193242 59.596 0.82257 62.761 62.516 63.339 3.1651 93 54 2 0 0 0 0.26468 2 13930 13930;14013 16.149 2.2431 1 144640 41346 1076 26116 26128 47398;47399 47398 0.05093742960286818 SLGRRWIA 8 Unmodified _SLGRRWIA_ 0 0 0 ENST00000427057.6_1_12:3931060-3931144:-|nuORF ENST00000427057.6_1_12:3931060-3931144:-|nuORF ENST00000427057.6_1_12:3931060-3931144:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 480.27392578125 2 479.782693 957.550834 0.17647 8.4665E-05 -1.3278 -0.00063703 -1.1513 -0.00055237 479.78195253907245 51.603 0.33343 54.819 54.573 54.906 3.2163 25 17 2 0 0 0 0.82752 1 11465 11465 12.532 1.7076 1 47659 41347 6708 26117 26129 47400 47400 0.07036019465408572 SLGRRWIA 8 Unmodified _SLGRRWIA_ 0 0 0 ENST00000427057.6_1_12:3931060-3931144:-|nuORF ENST00000427057.6_1_12:3931060-3931144:-|nuORF ENST00000427057.6_1_12:3931060-3931144:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 479.782693 957.550834 0.011201 5.3741E-06 -0.94846 -0.00045505 -0.93726 -0.00044968 479.78223413097487 51.106 0.17401 54.699 54.658 54.832 3.5932 -0.060336 0.00012956 NaN 12.532 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 36925 41348 6708 26117 26129 0.07036019465408572 SLHCQVSRKPK 11 Unmodified _SLHCQVSRKPK_ 0 0 0 L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|34|1|sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|34|1|sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|34|1|sense MSMS UPN47_class_I_Rep_1 2 641.8585205078125 2 641.856064 1281.69757 NaN NaN NaN NaN NaN NaN NaN 106.71 1 110.42 109.92 110.92 3.7088 0 0 0 0.37931 1 26154 26154 7.1017 0.89594 1 41349 14502 26118 26130 47401 47401 0.06799328568195051 SLHDYKEA 8 Unmodified _SLHDYKEA_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MULTI-MSMS UPN46_class_I_Rep_3 1 481.7325439453125 2 481.732532 961.45051 0.1988 9.5766E-05 0.019141 9.2207E-06 0.21794 0.00010499 481.7324548803119 53.631 1.3143 53.631 53.19 54.504 0 309 140 3 0 0 0 0.82752 2 11564 11564;11639 39.957 0 1 2286200 41350 605 26119 26131 47402;47403 47402 -0.031756823789010014 SLHEEKRS 8 Unmodified _SLHEEKRS_ 0 0 0 REV__ENSG00000127831|ENST00000248444|VIL1 REV__ENSG00000127831|ENST00000248444|VIL1 MSMS UPN47_class_I_Rep_2 3 493.25726318359375 2 493.256705 984.498858 NaN NaN NaN NaN NaN NaN NaN 37.831 1 41.219 40.719 41.719 3.3879 0 0 0 0.40643 1 7258 7258 2.0598 0 1 + 41351 18885 26120 26132 47404 47404 0.0059881126099980975 SLHFLELY 8 Unmodified _SLHFLELY_ 0 0 0 L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 511.2839050292969 2 511.271293 1020.52803 NaN NaN NaN NaN NaN NaN NaN 34.411 1 38.091 37.591 38.591 3.6797 0 0 0 0.40364 1 5464 5464 5.7604 0 1 41352 12375 26121 26133 47405 47405 0.018589555572589234 SLHFLELYI 9 Unmodified _SLHFLELYI_ 0 0 0 L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 567.8123168945312 2 567.813325 1133.6121 NaN NaN NaN NaN NaN NaN NaN 63.837 1 67.093 66.593 67.593 3.2556 0 0 0 0.36505 1 15168 15168 7.2892 0 1 41353 12375 26122 26134 47406 47406 0.05063486654148619 SLHIFMSFY 9 Unmodified _SLHIFMSFY_ 0 0 0 REV__L1ME2_dup1954|chr2:174100863-174101606:-|1.11316707604896|0.0345477923792621|5.01|151.0|32|1|anti-sense REV__L1ME2_dup1954|chr2:174100863-174101606:-|1.11316707604896|0.0345477923792621|5.01|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_3 4 573.26806640625 2 572.778428 1143.5423 NaN NaN NaN NaN NaN NaN NaN 40.052 1 43.289 42.789 43.789 3.2372 0 0 0 0.38299 1 7982 7982 4.756 0 1 + 41354 27846 26123 26135 47407 47407 -0.023727152860828937 SLHLQILSVL 10 Unmodified _SLHLQILSVL_ 0 0 0 REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|87|1|anti-sense REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|87|1|anti-sense MSMS UPN47_class_I_Rep_2 3 561.8457641601562 2 561.847699 1121.68084 NaN NaN NaN NaN NaN NaN NaN 88.074 1 91.521 91.021 92.021 3.4471 0 0 0 0.53105 1 21899 21899 1.4819 0 1 + 41355 26082 26124 26136 47408 47408 0.12487150953893433 SLHMKAKL 8 Oxidation (M) _SLHM(Oxidation (M))KAKL_ SLHM(1)KAKL SLHM(48)KAKL 0 0 1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS UPN47_class_I_Rep_3 4 472.272705078125 2 472.273312 942.532072 -0.8624 -0.00040729 -0.017059 -8.0567E-06 -0.87945 -0.00041534 472.2731317747344 14.52 0.68374 17.889 17.742 18.426 3.3697 173 83 4 0 0 0 0.82752 2 581 554;581 47.749 9.5731 1 221410 41356 1924 26125 26137 47409;47410 47410 58 0.05850721779347623 SLHNFTSLTW 10 Unmodified _SLHNFTSLTW_ 0 0 0 nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM nc|ENSG00000257335|O43451-1|MGAM nc|ENSG00000257335|O43451-1|MGAM MULTI-MSMS UPN47_class_I_Rep_3 4 603.30126953125 2 603.301113 1204.58767 -0.17111 -0.00010323 -0.045661 -2.7547E-05 -0.21677 -0.00013078 603.3010448974942 30.543 1.0019 33.854 33.622 34.624 3.3116 116 79 2 0 0 0 0.55448 1 5122 5122 4.897 0.95262 1 160110 41357 5770 26126 26138 47411 47411 -0.006437734993596678 SLHNLAHL 8 Unmodified _SLHNLAHL_ 0 0 0 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 MULTI-MSMS UPN47_class_I_Rep_3 4 452.7526550292969 2 452.753601 903.49265 -0.71083 -0.00032183 3.2872 0.0014883 2.5763 0.0011664 452.7529605835519 38.531 0.49719 41.773 41.476 41.973 3.2414 55 35 3 0 0 0 0.82752 1 7436 7436 8.5933 0 1 43657 41358 1814 26127 26139 47412 47412 0.03704337820136061 SLHNLAHL 8 Unmodified _SLHNLAHL_ 0 0 0 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 ENSG00000107165|ENST00000388918|TYRP1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 452.753601 903.49265 -0.52944 -0.0002397 0.018054 8.1738E-06 -0.51138 -0.00023153 452.7527629785301 38.26 0.26668 41.648 41.44 41.707 3.3879 -0.062603 -0.00097905 NaN 8.5933 25 22 2 NaN NaN NaN NaN 0 NaN NaN 0 38091 41359 1814 26127 26139 0.03704337820136061 SLHPKIEE 8 Unmodified _SLHPKIEE_ 0 0 0 REV__L1MD2_dup10591|chr22:21902783-21903495:-|1.2280819330149977|0.0499612399171131|4.62|151.0|25|3|sense REV__L1MD2_dup10591|chr22:21902783-21903495:-|1.2280819330149977|0.0499612399171131|4.62|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 476.7584533691406 2 476.758549 951.502546 NaN NaN NaN NaN NaN NaN NaN 94.655 1 94.655 94.155 95.155 0 0 0 0 0.40659 1 22961 22961 1.8442 0 1 + 41360 27387 26128 26140 47413 47413 0.024854810348415413 SLHSLDFLY 9 Unmodified _SLHSLDFLY_ 0 0 0 L1MA3_dup4281|chr7:152048750-152051180:-|1.727951263336586|0.0377226903744385|5.52|151.0|82|1|anti-sense L1MA3_dup4281|chr7:152048750-152051180:-|1.727951263336586|0.0377226903744385|5.52|151.0|82|1|anti-sense L1MA3_dup4281|chr7:152048750-152051180:-|1.727951263336586|0.0377226903744385|5.52|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.77978515625 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 54.148 1 57.65 57.15 58.15 3.5014 0 0 0 0.28335 1 12191 12191 11.64 0 1 41361 9549 26129 26141 47414 47414 0.0013803672338781325 SLHYMDYS 8 Unmodified _SLHYMDYS_ 0 0 0 REV__ENST00000415311.1_1_19:55270285-55278820:+|nuORF REV__ENST00000415311.1_1_19:55270285-55278820:+|nuORF MSMS UPN46_class_I_Rep_3 1 508.21160888671875 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 43.131 1 43.131 42.631 43.631 0 0 0 0 0.40404 1 8585 8585 5.2307 0 1 + 41362 18830 26130 26142 47415 47415 -0.09494731004929235 SLIADKEK 8 Unmodified _SLIADKEK_ 0 0 0 Tigger1_dup1995|chr2:241282505-241283471:+|2.43095088341279|0.1406635651848447|4.11|151.0|27|3|sense;Tigger1_dup11498|chr20:5553069-5553967:+|2.501376762236679|0.4841227158384836|2.37|151.0|28|3|sense;Tigger1_dup1972|chr2:231088339-231089554:+|1.0669433745954506|0.0448250699084891|4.57|151.0|39|3|sense Tigger1_dup1995|chr2:241282505-241283471:+|2.43095088341279|0.1406635651848447|4.11|151.0|27|3|sense Tigger1_dup1995|chr2:241282505-241283471:+|2.43095088341279|0.1406635651848447|4.11|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 452.269287109375 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 38.28 1 38.28 37.78 38.78 0 0 0 0 0.40659 1 7276 7276 1.8442 0 1 41363 33017 26131 26143 47416 47416 0.052143651776077604 SLIASHTII 9 Unmodified _SLIASHTII_ 0 0 0 REV__L1PBa_dup597|chr4:90404026-90407649:+|1.196524570808598|0.023259738916578|5.68|148.0|222|3|anti-sense REV__L1PBa_dup597|chr4:90404026-90407649:+|1.196524570808598|0.023259738916578|5.68|148.0|222|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 477.7845764160156 2 477.784567 953.554582 0.13255 6.3328E-05 0.11878 5.6751E-05 0.25133 0.00012008 477.7846493949162 61.887 0.51967 65.255 65.015 65.534 3.3681 44 40 2 0 0 0 0.28552 1 14531 14531 14.838 14.838 1 64762 + 41364 30656 26132 26144 47417 47417 0.07594644448624877 SLIDPFYFL 9 Unmodified _SLIDPFYFL_ 0 0 0 L1MEc_dup6856|chr6:37894671-37895329:-|1.124881303930911|0.0049950942181711|7.82|151.0|31|1|anti-sense L1MEc_dup6856|chr6:37894671-37895329:-|1.124881303930911|0.0049950942181711|7.82|151.0|31|1|anti-sense L1MEc_dup6856|chr6:37894671-37895329:-|1.124881303930911|0.0049950942181711|7.82|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7800903320312 2 557.794601 1113.57465 NaN NaN NaN NaN NaN NaN NaN 51.028 1 54.621 54.121 55.121 3.5932 0 0 0 0.36505 1 11240 11240 7.2892 0 1 41365 13129 26133 26145 47418 47418 0.02240395388548677 SLIDPFYFL 9 Unmodified _SLIDPFYFL_ 0 0 0 L1MEc_dup6856|chr6:37894671-37895329:-|1.124881303930911|0.0049950942181711|7.82|151.0|31|1|anti-sense L1MEc_dup6856|chr6:37894671-37895329:-|1.124881303930911|0.0049950942181711|7.82|151.0|31|1|anti-sense L1MEc_dup6856|chr6:37894671-37895329:-|1.124881303930911|0.0049950942181711|7.82|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 557.791748046875 2 557.794601 1113.57465 NaN NaN NaN NaN NaN NaN NaN 51.502 1 54.718 54.218 55.218 3.2163 0 0 0 0.29868 1 11467 11467 10.824 2.0785 1 41366 13129 26133 26145 47419 47419 0.02240395388548677 SLIEQTTAL 9 Unmodified _SLIEQTTAL_ 0 0 0 ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2 ENST00000395941.4_1_12:27107091-27110700:+|nuORF ENST00000395941.4_1_12:27107091-27110700:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.2708435058594 2 488.27149 974.528426 0.14842 7.247E-05 -0.87228 -0.00042591 -0.72386 -0.00035344 488.2709705708346 58.092 0.19081 61.529 61.389 61.58 3.437 13 10 2 0 0 0 0.40701 1 13399 13399 7.609 1.8771 1 44190 41367 1987 26134 26146 47420 47420 0.040143304864727725 SLIFGRVFR 9 Unmodified _SLIFGRVFR_ 0 0 0 L1P3_dup2464|chr10:74456691-74457411:+|1.5931410607032792|0.0222778840416184|6.16|151.0|26|1|anti-sense L1P3_dup2464|chr10:74456691-74457411:+|1.5931410607032792|0.0222778840416184|6.16|151.0|26|1|anti-sense L1P3_dup2464|chr10:74456691-74457411:+|1.5931410607032792|0.0222778840416184|6.16|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.824951171875 2 547.827101 1093.63965 NaN NaN NaN NaN NaN NaN NaN 89.341 1 93.014 92.514 93.514 3.6738 0 0 0 0.38639 1 22338 22338 3.9444 0.3479 1 41368 13535 26135 26147 47421 47421 0.09657434705104606 SLIGILSPLFR 11 Unmodified _SLIGILSPLFR_ 0 0 0 Tigger1_dup10450|chr15:72763686-72765155:+|3.614646695948584|0.1296015604274374|4.8|151.0|18|1|sense Tigger1_dup10450|chr15:72763686-72765155:+|3.614646695948584|0.1296015604274374|4.8|151.0|18|1|sense Tigger1_dup10450|chr15:72763686-72765155:+|3.614646695948584|0.1296015604274374|4.8|151.0|18|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 608.8785400390625 2 608.376623 1214.73869 0.53184 0.00032356 -0.010692 -6.5046E-06 0.52115 0.00031705 608.3766963479372 107.8 0.14508 111.48 111.41 111.56 3.6724 15 9 3 0 0 0 0.48412 1 26425 26425 8.1555 0 1 3856900 41369 32984 26136 26148 47422 47422 0.13991412879317977 SLIGQKIFPIP 11 Unmodified _SLIGQKIFPIP_ 0 0 0 REV__L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|202|1|anti-sense REV__L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|202|1|anti-sense MSMS UPN46_class_I_Rep_3 1 606.8729858398438 2 606.871174 1211.72779 NaN NaN NaN NaN NaN NaN NaN 108.01 1 108.01 107.51 108.51 0 0 0 0 0.2482 1 26370 26370 15.248 3.0078 1 + 41370 30000 26137 26149 47423 47423 0.13040010505028476 SLIGQKILPAP 11 Unmodified _SLIGQKILPAP_ 0 0 0 REV__L1PA6_dup5243|chr15:56954266-56955564:+|1.8242420512221784|0.0448397898099065|5.35|151.0|48|1|anti-sense REV__L1PA6_dup5243|chr15:56954266-56955564:+|1.8242420512221784|0.0448397898099065|5.35|151.0|48|1|anti-sense MSMS UPN46_class_I_Rep_3 1 568.8535766601562 2 568.855524 1135.69649 NaN NaN NaN NaN NaN NaN NaN 97.33 1 97.33 96.83 97.83 0 0 0 0 0.35398 1 23678 23678 8.7454 0 1 + 41371 29830 26138 26150 47424 47424 0.1340743747093711 SLIGQKILPAP 11 Unmodified _SLIGQKILPAP_ 0 0 0 REV__L1PA6_dup5243|chr15:56954266-56955564:+|1.8242420512221784|0.0448397898099065|5.35|151.0|48|1|anti-sense REV__L1PA6_dup5243|chr15:56954266-56955564:+|1.8242420512221784|0.0448397898099065|5.35|151.0|48|1|anti-sense MSMS UPN46_class_I_Rep_3 1 568.8535766601562 2 568.855524 1135.69649 NaN NaN NaN NaN NaN NaN NaN 97.572 1 97.572 97.072 98.072 0 0 0 0 0.35398 1 23745 23745 8.7454 0 1 + 41372 29830 26138 26150 47425 47425 0.1340743747093711 SLIIQPGFR 9 Unmodified _SLIIQPGFR_ 0 0 0 HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.8057861328125 2 515.805834 1029.59712 0.31065 0.00016023 0.044075 2.2734E-05 0.35472 0.00018297 515.8058391983161 67.771 0.98067 71.222 70.743 71.723 3.4517 174 75 3 0 0 0 0.28552 1 15681 15681 14.838 0 1 757160 41373 8131 26139 26151 47426 47426 0.08350039576839663 SLIIQPGFR 9 Unmodified _SLIIQPGFR_ 0 0 0 HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.8055419921875 2 515.805834 1029.59712 0.35665 0.00018396 -0.056081 -2.8927E-05 0.30057 0.00015503 515.8057595229077 67.671 0.78727 71.167 70.713 71.5 3.4964 145 67 3 0 0 0 0.28552 1 15473 15473 14.838 0 1 778710 41374 8131 26139 26151 47427 47427 0.08350039576839663 SLIIQPGFR 9 Unmodified _SLIIQPGFR_ 0 0 0 HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense HERVH-int_dup1524|chr4:9639325-9642266:+|1.2542554693126706|0.1467756187635279|3.1|148.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.8058471679688 2 515.805834 1029.59712 0.39595 0.00020423 -0.086797 -4.4771E-05 0.30915 0.00015946 515.8057471399972 67.509 1.0874 71.017 70.487 71.574 3.5077 207 96 3 0 0 0 0.28552 1 15332 15332 14.838 0 1 1138000 41375 8131 26139 26151 47428 47428 0.08350039576839663 SLIKDQYTDH 10 Unmodified _SLIKDQYTDH_ 0 0 0 L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 609.7001953125 2 610.30131 1218.58807 0.49583 0.00030261 -0.38019 -0.00023203 0.11564 7.0577E-05 610.3009956674962 59.928 1.1535 63.201 62.665 63.818 3.2731 169 74 3 0 0 0 0.84575 1 13831 13831 1.4819 1.4819 1 323080 41376 12445 26140 26152 47429 47429 -0.012483985701464917 SLIKDQYTDH 10 Unmodified _SLIKDQYTDH_ 0 0 0 L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 610.30131 1218.58807 0.44534 0.00027179 -0.39136 -0.00023885 0.053986 3.2948E-05 610.3010305327841 59.681 1.015 63.079 62.638 63.653 3.3982 -0.066514 -1.9517E-06 NaN 1.4819 171 69 3 NaN NaN NaN NaN 0 NaN NaN 0 270930 41377 12445 26140 26152 -0.012483985701464917 SLIKDQYTDH 10 Unmodified _SLIKDQYTDH_ 0 0 0 L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|81|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 610.30131 1218.58807 0.36858 0.00022494 -0.39695 -0.00024226 -0.028369 -1.7314E-05 610.300980652364 59.992 0.98036 63.157 62.729 63.709 3.1651 0.011171 -8.7765E-06 NaN 1.4819 153 64 3 NaN NaN NaN NaN 0 NaN NaN 0 322180 41378 12445 26140 26152 -0.012483985701464917 SLIKEVLE 8 Unmodified _SLIKEVLE_ 0 0 0 nc|ENSG00000075340|P35612-5|ADD2;nc|ENSG00000075340|P35612-6|ADD2 nc|ENSG00000075340|P35612-5|ADD2 nc|ENSG00000075340|P35612-5|ADD2 MSMS UPN46_class_I_Rep_3 1 465.77728271484375 2 465.778951 929.543348 NaN NaN NaN NaN NaN NaN NaN 75.547 1 75.547 75.047 76.047 0 0 0 0 0.35715 1 17571 17571 20.454 0 1 41379 16636 26141 26153 47430 47430 0.07575822354465345 SLIKPLQLQGR 11 Unmodified _SLIKPLQLQGR_ 0 0 0 REV__ENST00000531038.5_1_4:8472779-8495174:+|nuORF REV__ENST00000531038.5_1_4:8472779-8495174:+|nuORF MSMS UPN47_class_I_Rep_3 4 626.8889770507812 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 105.76 1 109.29 108.79 109.79 3.5308 0 0 0 0.38417 1 25879 25879 2.7352 0 1 + 41380 22851 26142 26154 47431 47431 0.1504931613953886 SLIKPLQLQGR 11 Unmodified _SLIKPLQLQGR_ 0 0 0 REV__ENST00000531038.5_1_4:8472779-8495174:+|nuORF REV__ENST00000531038.5_1_4:8472779-8495174:+|nuORF MSMS UPN47_class_I_Rep_3 4 626.8897705078125 2 626.890429 1251.76631 NaN NaN NaN NaN NaN NaN NaN 106.25 1 109.79 109.29 110.29 3.5367 0 0 0 0.38417 1 25982 25982 2.7352 0 1 + 41381 22851 26142 26154 47432 47432 0.1504931613953886 SLIKYALF 8 Unmodified _SLIKYALF_ 0 0 0 L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|16|1|sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|16|1|sense L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|16|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 477.78607177734375 2 477.786579 953.558604 0.27698 0.00013234 -0.17678 -8.4464E-05 0.1002 4.7874E-05 477.78637089923876 68.308 0.17757 71.817 71.749 71.927 3.5094 26 16 2 0 0 0 0.82752 1 15646 15646 25.399 1.3787 1 141580 41382 14180 26143 26155 47433 47433 0.07996733942320589 SLILSRRLFF 10 Unmodified _SLILSRRLFF_ 0 0 0 REV__AluSz_dup72109|chr13:50113139-50113447:-|1.25231940845851|0.0310283507331579|5.33|151.0|16|2|anti-sense REV__AluSz_dup72109|chr13:50113139-50113447:-|1.25231940845851|0.0310283507331579|5.33|151.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 626.3798217773438 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 103.55 1 103.55 103.05 104.05 0 0 0 0 0.53105 1 25266 25266 0.40072 0 1 + 41383 17101 26144 26156 47434 47434 0.13458234973427352 SLIPVALGV 9 Unmodified _SLIPVALGV_ 0 0 0 REV__nc|ENSG00000154914|Q70EL4-4|USP43 REV__nc|ENSG00000154914|Q70EL4-4|USP43 MULTI-SECPEP UPN48_class_I_Rep_1 5 435.2508239746094 2 434.778754 867.542954 -0.0024962 -1.0853E-06 2.1806 0.00094809 2.1781 0.00094701 434.77956513463687 68.24 0.11452 71.691 71.631 71.746 3.4517 14 10 2 0 0 0 0.12444 1 15756 15756 2.0598 0 1 46457 + 41384 19752 26145 26157 47435 47435 0.10388447425293634 SLIRSVVAL 9 Unmodified _SLIRSVVAL_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MULTI-SECPEP UPN47_class_I_Rep_1 2 479.76812744140625 2 479.30821 956.601866 0.15602 7.4781E-05 -0.12686 -6.0804E-05 0.029159 1.3976E-05 479.3081564073349 59.745 0.54969 63.143 62.879 63.429 3.3982 38 31 2 0 0 0 0.11642 1 13885 13885 12.241 2.8575 1 78300 41385 1639 26146 26158 47436 47436 0.12182923719615246 SLISPTSEIK 10 Unmodified _SLISPTSEIK_ 0 0 0 REV__L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|23|1|sense REV__L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|23|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 537.8057250976562 2 537.805697 1073.59684 0.41875 0.00022521 -0.26407 -0.00014202 0.15468 8.3187E-05 537.8054424236151 68.198 0.2859 71.395 71.205 71.491 3.1977 22 17 2 0 0 0 0.31093 1 16560 16560 29.841 0 1 412810 + 41386 30411 26147 26159 47437 47437 0.06298575066307421 SLISPTSEIK 10 Unmodified _SLISPTSEIK_ 0 0 0 REV__L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|23|1|sense REV__L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|23|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 537.805697 1073.59684 0.35013 0.0001883 0.22796 0.0001226 0.5781 0.0003109 537.805737453861 68.076 0.11792 71.441 71.353 71.471 3.3646 0.022726 0.00040112 NaN 29.841 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 267270 + 41387 30411 26147 26159 0.06298575066307421 SLISPTSEIK 10 Unmodified _SLISPTSEIK_ 0 0 0 REV__L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|23|1|sense REV__L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|23|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 537.805697 1073.59684 0.41875 0.00022521 -0.26407 -0.00014202 0.15468 8.3187E-05 537.8054424236151 68.198 0.2859 71.395 71.205 71.491 3.1977 -0.022726 -0.00012812 NaN 29.841 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 412810 + 41388 30411 26147 26159 0.06298575066307421 SLISRTYR 8 Unmodified _SLISRTYR_ 0 0 0 L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|24|1|sense L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|24|1|sense L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|24|1|sense MSMS UPN48_class_I_Rep_2 6 498.2848815917969 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 21.661 1 25.307 24.807 25.807 3.6459 0 0 0 0.40643 1 2085 2085 2.0598 0.21551 1 41389 13949 26148 26160 47438 47438 0.05848278537382612 SLITFPTLKSA 11 Unmodified _SLITFPTLKSA_ 0 0 0 L1MB2_dup7698|chr18:13022681-13024451:-|1.218346850411684|0.0851025584311511|3.84|151.0|85|1|anti-sense L1MB2_dup7698|chr18:13022681-13024451:-|1.218346850411684|0.0851025584311511|3.84|151.0|85|1|anti-sense L1MB2_dup7698|chr18:13022681-13024451:-|1.218346850411684|0.0851025584311511|3.84|151.0|85|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.34521484375 2 589.344989 1176.67542 0.53038 0.00031258 -2.6127 -0.0015398 -2.0823 -0.0012272 589.3433971478157 86.681 0.11317 90.472 90.424 90.537 3.7905 23 14 2 0 0 0 0.65559 1 20570 20570 2.7352 0 1 91296 41390 10287 26149 26161 47439 47439 0.09415427371436635 SLIVEPKTG 9 Unmodified _SLIVEPKTG_ 0 0 0 ENST00000306910.8_1_19:58929280-58929493:+|nuORF ENST00000306910.8_1_19:58929280-58929493:+|nuORF ENST00000306910.8_1_19:58929280-58929493:+|nuORF MSMS UPN47_class_I_Rep_1 2 472.2883605957031 2 472.276575 942.538597 NaN NaN NaN NaN NaN NaN NaN 88.398 1 92.054 91.554 92.554 3.6563 0 0 0 0.39598 1 22106 22106 1.6526 0 1 41391 6096 26150 26162 47440 47440 0.0650293821172454 SLKAQIIIN 9 Unmodified _SLKAQIIIN_ 0 0 0 Tigger1_dup10918|chr17:59651479-59653154:-|1.4267130329379532|0.2530482798877533|2.5|151.0|16|1|sense Tigger1_dup10918|chr17:59651479-59653154:-|1.4267130329379532|0.2530482798877533|2.5|151.0|16|1|sense Tigger1_dup10918|chr17:59651479-59653154:-|1.4267130329379532|0.2530482798877533|2.5|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 500.314208984375 2 500.313492 998.612431 NaN NaN NaN NaN NaN NaN NaN 72.646 1 76.184 75.684 76.684 3.5373 0 0 0 0.39598 1 16946 16946 1.6526 0 1 41392 33002 26151 26163 47441 47441 0.11306906374045411 SLKASSLRSL 10 Unmodified _SLKASSLRSL_ 0 0 0 MLT1G3_dup598|chr3:138777221-138777687:+|1.1979605090935914|0.0057163245510076|7.71|151.0|20|1|anti-sense MLT1G3_dup598|chr3:138777221-138777687:+|1.1979605090935914|0.0057163245510076|7.71|151.0|20|1|anti-sense MLT1G3_dup598|chr3:138777221-138777687:+|1.1979605090935914|0.0057163245510076|7.71|151.0|20|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 531.318359375 2 531.319306 1060.62406 0.42459 0.00022559 -0.47807 -0.00025401 -0.053478 -2.8414E-05 531.3189385559369 85.819 0.76092 89.525 89.28 90.041 3.7058 147 86 2 0 0 0 0.84575 1 20473 20473 2.9952 0 1 240640 41393 16422 26152 26164 47442 47442 0.0961710339736328 SLKERYTSM 9 Unmodified _SLKERYTSM_ 0 0 0 REV__ENST00000377069.8_1_12:122013716-122013755:-|nuORF REV__ENST00000377069.8_1_12:122013716-122013755:-|nuORF MSMS UPN47_class_I_Rep_1 2 557.780029296875 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 36.297 1 39.966 39.466 40.466 3.6692 0 0 0 0.38916 1 6758 6758 3.2813 0 1 + 41394 22022 26153 26165 47443 47443 -0.003388221253771917 SLKHTLLSLV 10 Unmodified _SLKHTLLSLV_ 0 0 0 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4 UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MSMS UPN47_class_I_Rep_3 4 555.7620849609375 2 555.847699 1109.68084 NaN NaN NaN NaN NaN NaN NaN 70.174 1 73.385 72.885 73.885 3.2113 0 0 0 0.53105 1 17151 17151 1.6526 0 1 41395 2567 26154 26166 47444 47444 0.13039150953909484 SLKIPITQIQL 11 Unmodified _SLKIPITQIQL_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|38|3|sense MSMS UPN48_class_I_Rep_3 7 627.3838500976562 2 627.395013 1252.77547 NaN NaN NaN NaN NaN NaN NaN 103.42 1 107.16 106.66 107.66 3.7434 0 0 0 0.38417 1 24426 24426 2.4985 0 1 + 41396 29405 26155 26167 47445 47445 0.15919664705234027 SLKIPTLTL 9 Unmodified _SLKIPTLTL_ 0 0 0 REV__HERVH-int_dup3048|chr8:8169077-8171970:+|3.662929003424659|0.30259805228926|3.6|151.0|76|3|sense REV__HERVH-int_dup3048|chr8:8169077-8171970:+|3.662929003424659|0.30259805228926|3.6|151.0|76|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 492.76611328125 2 493.318243 984.621933 0.21088 0.00010403 -0.052155 -2.5729E-05 0.15872 7.8301E-05 493.31803714743137 70.302 0.10658 73.762 73.73 73.836 3.4598 10 7 2 0 0 0 0.118 1 16365 16365 10.074 0 1 89907 + 41397 23666 26156 26168 47446 47446 0.12900674659545075 SLKISLGQNV 10 Unmodified _SLKISLGQNV_ 0 0 0 REV__ENSG00000154646|ENST00000284885|TMPRSS15 REV__ENSG00000154646|ENST00000284885|TMPRSS15 MULTI-SECPEP UPN47_class_I_Rep_3 4 529.7487182617188 2 529.813856 1057.61316 -0.19872 -0.00010528 0.29141 0.00015439 0.09269 4.9108E-05 529.8141295842927 33.418 0.35758 36.693 36.458 36.816 3.2748 38 28 2 0 0 0 0.84575 1 5904 5904 10.8 0 1 50455 + 41398 19742 26157 26169 47447 47447 0.0866570102307378 SLKKLGPDY 9 Unmodified _SLKKLGPDY_ 0 0 0 nc|ENSG00000264006|Q5T2L2|AKR1C8;ENSG00000264006|ENST00000648824|AKR1C8 nc|ENSG00000264006|Q5T2L2|AKR1C8 nc|ENSG00000264006|Q5T2L2|AKR1C8 MULTI-MSMS UPN48_class_I_Rep_1 5 510.7897644042969 2 510.78985 1019.56515 0.27756 0.00014178 0.34688 0.00017718 0.62444 0.00031896 510.7896378341449 35.152 0.84983 38.667 38.331 39.181 3.5144 142 86 3 0 0 0 0.38714 1 5802 5802 8.7454 0 1 358630 41399 5794 26158 26170 47448 47448 0.056146271030456774 SLKKSTLW 8 Unmodified _SLKKSTLW_ 0 0 0 Tigger7_dup1312|chr6:166374997-166375400:-|1.2631363753932483|0.2622633472588758|2.27|151.0|22|2|anti-sense Tigger7_dup1312|chr6:166374997-166375400:-|1.2631363753932483|0.2622633472588758|2.27|151.0|22|2|anti-sense Tigger7_dup1312|chr6:166374997-166375400:-|1.2631363753932483|0.2622633472588758|2.27|151.0|22|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 481.78680419921875 2 481.78711 961.559667 0.18021 8.6821E-05 0.10322 4.9729E-05 0.28343 0.00013655 481.78706309042354 41.222 0.77042 44.973 44.6 45.371 3.7509 107 81 2 0 0 0 0.82752 1 7612 7612 0.69038 0 1 107670 41400 33453 26159 26171 47449 47449 0.07734948311224343 SLKKYVVF 8 Unmodified _SLKKYVVF_ 0 0 0 REV__ENST00000476524.1_1_21:34903719-34911621:-|nuORF REV__ENST00000476524.1_1_21:34903719-34911621:-|nuORF MSMS UPN48_class_I_Rep_3 7 492.29791259765625 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 42.097 1 45.739 45.239 46.239 3.6415 0 0 0 0.40604 1 7677 7677 2.5775 0 1 + 41401 22540 26160 26172 47450 47450 0.09316422833660454 SLKPNGFTA 9 Unmodified _SLKPNGFTA_ 0 0 0 L1MA2_dup4218|chrX:81287152-81287558:+|3.6097156077795582|0.158509141388744|4.51|151.0|3|1|sense L1MA2_dup4218|chrX:81287152-81287558:+|3.6097156077795582|0.158509141388744|4.51|151.0|3|1|sense L1MA2_dup4218|chrX:81287152-81287558:+|3.6097156077795582|0.158509141388744|4.51|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 467.7531433105469 2 467.753267 933.491981 -0.072052 -3.3703E-05 -0.3022 -0.00014135 -0.37425 -0.00017506 467.7530423860734 27.99 0.96096 27.99 27.635 28.596 0 131 75 2 0 0 0 0.47763 1 4156 4156 2.9952 0.69251 1 208530 41402 9382 26161 26173 47451 47451 0.022574983804133808 SLKRKGVR 8 Unmodified _SLKRKGVR_ 0 0 0 Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|16|3|sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|16|3|sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 472.31170654296875 2 472.311618 942.608683 NaN NaN NaN NaN NaN NaN NaN 101.89 1 101.89 101.39 102.39 0 0 0 0 0.40746 1 24863 24863 0.69038 0 1 41403 507 26162 26174 47452 47452 0.13508281390852517 SLKRKGVR 8 Unmodified _SLKRKGVR_ 0 0 0 Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|16|3|sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|16|3|sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 472.77093505859375 2 472.311618 942.608683 NaN NaN NaN NaN NaN NaN NaN 101.93 1 101.93 101.43 102.43 0 0 0 0 0.40746 1 24872 24872 0.69038 0 1 41404 507 26162 26174 47453 47453 0.13508281390852517 SLKRPIILIRL 11 Unmodified _SLKRPIILIRL_ 0 0 0 L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|31|2|sense L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|31|2|sense L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|31|2|sense MSMS UPN47_class_I_Rep_2 3 441.297607421875 3 441.306252 1320.89693 NaN NaN NaN NaN NaN NaN NaN 47.095 1 50.447 49.947 50.947 3.3515 0 0 0 0.38417 1 10081 10081 0.094841 0 1 41405 11097 26163 26175 47454 47454 0.2493133185841998 SLKSGRVIPPA 11 Unmodified _SLKSGRVIPPA_ 0 0 0 L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|313|3|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.8447875976562 2 562.842948 1123.67134 NaN NaN NaN NaN NaN NaN NaN 107.98 1 107.98 107.48 108.48 0 0 0 0 0.22906 1 26360 26360 16.149 3.9084 1 41406 13595 26164 26176 47455 47455 0.11445382668375714 SLKSGRVIPPA 11 Unmodified _SLKSGRVIPPA_ 0 0 0 L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|313|3|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.8430786132812 2 562.842948 1123.67134 0.50506 0.00028427 -0.084937 -4.7806E-05 0.42012 0.00023646 562.8428187114564 107.86 0.35838 111.53 111.48 111.83 3.6724 37 24 2 0 0 0 0.295 1 26448 26448 16.149 2.2431 1 27962000 41407 13595 26164 26176 47456 47456 0.11445382668375714 SLKSGRVIPPA 11 Unmodified _SLKSGRVIPPA_ 0 0 0 L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|313|3|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.8428955078125 2 562.842948 1123.67134 0.43796 0.0002465 0.092884 5.2279E-05 0.53084 0.00029878 562.8428989442142 107.88 0.4344 111.51 111.42 111.86 3.6313 114 36 5 0 0 0 0.35213 1 26072 26072 11.495 0 1 56070000 41408 13595 26164 26176 47457 47457 0.11445382668375714 SLKSGRVIPPA 11 Unmodified _SLKSGRVIPPA_ 0 0 0 L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|313|3|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 562.842948 1123.67134 0.43796 0.0002465 0.092884 5.2279E-05 0.53084 0.00029878 562.8428989442142 107.88 0.4344 111.51 111.42 111.86 3.6313 -0.011591 0.000152 NaN 16.149 114 36 5 NaN NaN NaN NaN 0 NaN NaN 0 56070000 41409 13595 26164 26176 0.11445382668375714 SLKSGRVIPPA 11 Unmodified _SLKSGRVIPPA_ 0 0 0 L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense;L1PA4_dup4398|chr6:5686201-5692336:-|1.8624851693326208|0.1093228241643238|4.09|151.0|313|3|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|60|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 562.842948 1123.67134 0.4922 0.00027703 -0.31254 -0.00017591 0.17966 0.00010112 562.8427921173168 107.95 0.11688 111.62 111.59 111.71 3.6746 0.10411 -0.00030438 NaN 16.149 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2554400 41410 13595 26164 26176 0.11445382668375714 SLKTMVLF 8 Unmodified _SLKTMVLF_ 0 0 0 L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|107|2|anti-sense L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|107|2|anti-sense L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|107|2|anti-sense MSMS UPN48_class_I_Rep_1 5 469.7712097167969 2 469.772614 937.530675 NaN NaN NaN NaN NaN NaN NaN 55.525 1 59.033 58.533 59.533 3.5082 0 0 0 0.40738 1 11860 11860 0.79363 0 1 41411 9093 26165 26177 47458 47458 0.059410876905758414 SLKTSLRR 8 Unmodified _SLKTSLRR_ 0 0 0 L1MEc_dup10458|chr9:126814820-126816077:-|1.6695866135564303|0.0294021701339312|5.83|151.0|17|2|sense L1MEc_dup10458|chr9:126814820-126816077:-|1.6695866135564303|0.0294021701339312|5.83|151.0|17|2|sense L1MEc_dup10458|chr9:126814820-126816077:-|1.6695866135564303|0.0294021701339312|5.83|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 480.8010559082031 2 480.801083 959.587613 NaN NaN NaN NaN NaN NaN NaN 88.467 1 92.123 91.623 92.623 3.6563 0 0 0 0.40746 1 22126 22126 0.69038 0 1 41412 12996 26166 26178 47459 47459 0.1062027129131593 SLKVFDRQV 9 Unmodified _SLKVFDRQV_ 0 0 0 REV__ENSG00000029725|ENST00000537505|RABEP1 REV__ENSG00000029725|ENST00000537505|RABEP1 MULTI-MSMS UPN48_class_I_Rep_2 6 546.3135986328125 2 546.314023 1090.61349 0.4409 0.00024087 -0.53914 -0.00029454 -0.098238 -5.3669E-05 546.3136776376964 38.968 0.95019 42.698 42.434 43.384 3.7297 147 91 2 0 0 0 0.16559 1 6831 6831 24.021 4.7636 1 283070 + 41413 17623 26167 26179 47460 47460 0.07181120742939129 SLKVQESSRD 10 Unmodified _SLKVQESSRD_ 0 0 0 nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF;nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274 nc|ENSG00000171606|Q96GC6-4|ZNF274 nc|ENSG00000171606|Q96GC6-4|ZNF274 MSMS UPN48_class_I_Rep_1 5 574.3356323242188 2 574.798934 1147.58332 NaN NaN NaN NaN NaN NaN NaN 112.49 1 116.13 115.63 116.63 3.6321 0 0 0 0.53105 1 27303 27303 1.1933 0.50296 1 41414 4533 26168 26180 47461 47461 0.015427172870886352 SLKVRNGDL 9 Unmodified _SLKVRNGDL_ 0 0 0 REV__L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|22|2|sense REV__L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|22|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.2906494140625 2 501.290548 1000.56654 0.29503 0.0001479 0.18174 9.1107E-05 0.47678 0.000239 501.290495717398 80.261 0.77664 80.261 79.71 80.487 0 181 72 4 0 0 0 0.26948 1 18900 18900 15.847 1.2655 1 898770 + 41415 28727 26169 26181 47462 47462 0.06628261191792717 SLKVRNGDL 9 Unmodified _SLKVRNGDL_ 0 0 0 REV__L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|22|2|sense REV__L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|22|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 501.290548 1000.56654 0.19962 0.00010007 0.028946 1.451E-05 0.22857 0.00011458 501.290640710345 76.447 0.25276 79.862 79.744 79.996 3.4149 -0.12126 -0.0001486 NaN 15.847 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 114170 + 41416 28727 26169 26181 0.06628261191792717 SLKVRNGDL 9 Unmodified _SLKVRNGDL_ 0 0 0 REV__L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|22|2|sense REV__L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|22|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 501.290548 1000.56654 0.30618 0.00015348 0.19764 9.9076E-05 0.50382 0.00025256 501.2905060107166 76.244 0.25938 79.827 79.674 79.933 3.5831 -0.15617 2.0534E-05 NaN 15.847 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 89981 + 41417 28727 26169 26181 0.06628261191792717 SLKVSKAT 8 Unmodified _SLKVSKAT_ 0 0 0 nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL nc|ENSG00000009950|Q9NP71-3|MLXIPL nc|ENSG00000009950|Q9NP71-3|MLXIPL MULTI-SECPEP UPN48_class_I_Rep_1 5 416.75628662109375 2 417.258185 832.501818 -0.13388 -5.5864E-05 -0.53738 -0.00022423 -0.67127 -0.00028009 417.2579240710043 109.25 0.44968 112.88 112.75 113.2 3.6321 76 56 2 0 0 0 0.72333 1 26582 26582 0.69038 0 1 1859500 41418 748 26170 26182 47463 47463 0.07886686385802477 SLLASLHTL 9 Unmodified _SLLASLHTL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MSMS UPN47_class_I_Rep_2 3 477.78460693359375 2 477.784567 953.554582 NaN NaN NaN NaN NaN NaN NaN 62.26 1 65.519 65.019 66.019 3.2594 0 0 0 0.10315 1 14691 14691 24.021 0.87215 1 41419 3220 26171 26183 47464 47464 0.07594644448602139 SLLATAILGA 10 Unmodified _SLLATAILGA_ 0 0 0 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 MULTI-MSMS UPN46_class_I_Rep_3 1 465.286865234375 2 465.286943 928.559333 0.1956 9.1012E-05 -0.32928 -0.00015321 -0.13367 -6.2195E-05 465.2867424682431 75.325 0.50159 75.325 75.117 75.619 0 88 47 3 0 0 0 0.2363 1 17500 17500 39.95 1.335 1 1762500 41420 3445 26172 26184 47465 47465 0.09219528591370363 SLLAVIYNSFR 11 Unmodified _SLLAVIYNSFR_ 0 0 0 L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|69|2|anti-sense L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|69|2|anti-sense L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_3 4 641.8591918945312 2 641.861338 1281.70812 NaN NaN NaN NaN NaN NaN NaN 104.33 1 107.85 107.35 108.35 3.5205 0 0 0 0.32232 1 25577 25577 10.8 1.2555 1 41421 11273 26173 26185 47466 47466 0.0785363449426768 SLLCRSVLV 9 Unmodified _SLLCRSVLV_ 0 0 0 L1MB1_dup3967|chr10:75586640-75587178:-|1.247829148659056|0.0067819483113885|7.52|147.0|24|2|anti-sense L1MB1_dup3967|chr10:75586640-75587178:-|1.247829148659056|0.0067819483113885|7.52|147.0|24|2|anti-sense L1MB1_dup3967|chr10:75586640-75587178:-|1.247829148659056|0.0067819483113885|7.52|147.0|24|2|anti-sense MSMS UPN46_class_I_Rep_3 1 495.29296875 2 495.294245 988.573937 NaN NaN NaN NaN NaN NaN NaN 68.181 1 68.181 67.681 68.681 0 0 0 0 0.026253 1 15554 15554 49.933 0 1 41422 10181 26174 26186 47467 47467 0.0791927746786314 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN46_class_I_Rep_3 1 515.3136596679688 2 515.313158 1028.61176 0.32323 0.00016657 -0.076683 -3.9516E-05 0.24655 0.00012705 515.3131742295803 88.972 0.10409 88.972 88.88 88.984 0 16 12 3 0 0 0 0.10225 1 21375 21375 33.445 11.908 1 194760 41423 1648 26175 26187 47468 47468 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS UPN46_class_I_Rep_3 1 515.3135375976562 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 89.064 1 89.064 88.564 89.564 0 0 0 0 0.067326 1 21415 21415 32.037 12.676 1 41424 1648 26175 26187 47469 47469 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN47_class_I_Rep_1 2 515.8150024414062 2 515.313158 1028.61176 0.31333 0.00016146 -0.66951 -0.00034501 -0.35618 -0.00018354 515.3127442442546 82.603 0.19783 86.142 86.085 86.283 3.5386 28 21 2 0 0 0 0.26468 1 20655 20655 16.149 6.766 1 54144 41425 1648 26175 26187 47470 47470 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS UPN47_class_I_Rep_1 2 515.3126831054688 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 82.222 1 85.734 85.234 86.234 3.5122 0 0 0 0.15288 1 20536 20536 19.362 6.3195 1 41426 1648 26175 26187 47471 47471 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS UPN47_class_I_Rep_1 2 515.3135375976562 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 82.35 1 85.863 85.363 86.363 3.5122 0 0 0 0.34878 1 20570 20570 8.1555 4.559 1 41427 1648 26175 26187 47472 47472 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS UPN47_class_I_Rep_1 2 515.3118896484375 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 82.47 1 85.982 85.482 86.482 3.5122 0 0 0 0.34878 1 20602 20602 8.1555 2.4237 1 41428 1648 26175 26187 47473 47473 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS UPN47_class_I_Rep_1 2 515.3134765625 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 82.492 1 86.004 85.504 86.504 3.5122 0 0 0 0.15288 1 20609 20609 19.362 2.249 1 41429 1648 26175 26187 47474 47474 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS UPN47_class_I_Rep_2 3 515.3123168945312 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 82.431 1 85.83 85.33 86.33 3.3984 0 0 0 0.062145 1 20547 20547 33.445 7.1768 1 41430 1648 26175 26187 47475 47475 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN47_class_I_Rep_3 4 515.3135986328125 2 515.313158 1028.61176 0.31308 0.00016133 0.26475 0.00013643 0.57782 0.00029776 515.3135038798553 82.675 0.44031 86.012 85.715 86.155 3.337 73 53 2 0 0 0 0.048729 5 20758 20662;20697;20720;20753;20758 49.527 18.259 1 110870 41431 1648 26175 26187 47476;47477;47478;47479;47480 47480 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN47_class_I_Rep_3 4 515.30908203125 2 515.313158 1028.61176 0.31349 0.00016155 0.26991 0.00013909 0.5834 0.00030063 515.3133942167749 83.072 0.33813 86.422 86.168 86.506 3.35 61 38 2 0 0 0 0.16799 4 20807 20788;20800;20807;20831 23.79 7.039 1 176300 41432 1648 26175 26187 47481;47482;47483;47484 47483 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN47_class_I_Rep_3 4 515.3125 2 515.313158 1028.61176 0.31444 0.00016204 -1.633 -0.00084151 -1.3186 -0.00067947 515.3124167950053 83.209 0.076752 86.559 86.525 86.602 3.35 10 8 2 0 0 0 0.073198 1 20865 20865 40.239 12.61 1 53485 41433 1648 26175 26187 47485 47485 0.098600669343341 SLLDLGAQAV 10 Unmodified _SLLDLGAQAV_ 0 0 0 REV__AluJb_dup125341|chr22:40053937-40054225:+|1.0036142378960498|0.006296229559159|7.32|151.0|15|2|anti-sense REV__AluJb_dup125341|chr22:40053937-40054225:+|1.0036142378960498|0.006296229559159|7.32|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.78021240234375 2 493.779482 985.544411 0.042509 2.099E-05 0.26722 0.00013195 0.30973 0.00015294 493.77963268500133 51.135 0.75735 54.728 54.477 55.235 3.5932 53 37 2 0 0 0 0.4561 1 11227 11227 15.248 0 1 156070 + 41434 16925 26176 26188 47486 47486 0.05106036723384477 SLLDLVQVN 9 Unmodified _SLLDLVQVN_ 0 0 0 REV__HAUS8|p.E285K|1|0.35|ENSG00000131351|chr19:17052901-17052901|C/T|missense_variant REV__HAUS8|p.E285K|1|0.35|ENSG00000131351|chr19:17052901-17052901|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 500.7875061035156 2 500.787307 999.560061 0.12474 6.2466E-05 0.43054 0.00021561 0.55527 0.00027807 500.7873960283251 53.926 1.1031 57.454 57.122 58.225 3.5278 120 58 3 0 0 0 0.36392 1 12222 12222 10.074 0 1 369020 + 41435 18973 26177 26189 47487 47487 0.06026323240428155 SLLDVAVHM 9 Oxidation (M) _SLLDVAVHM(Oxidation (M))_ SLLDVAVHM(1) SLLDVAVHM(89) 0 0 1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-SECPEP UPN47_class_I_Rep_1 2 500.7870788574219 2 500.760235 999.505917 0.12544 6.2817E-05 -0.46003 -0.00023036 -0.33458 -0.00016755 500.75975110914794 54.04 0.56639 57.568 57.32 57.886 3.5278 51 29 2 0 0 0 1.8526E-05 1 12181 12181 88.904 52.859 1 117150 41436 5620 26178 26190 47488 47488 168 0.006144078172155787 SLLDVAVHM 9 Oxidation (M) _SLLDVAVHM(Oxidation (M))_ SLLDVAVHM(1) SLLDVAVHM(48) 0 0 1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS UPN47_class_I_Rep_2 3 500.7601623535156 2 500.760235 999.505917 0.28852 0.00014448 -0.69278 -0.00034692 -0.40427 -0.00020244 500.7596991098228 54.285 0.73902 57.604 57.324 58.063 3.3187 59 36 2 0 0 0 0.051515 1 12315 12315 48.346 26.599 1 198510 41437 5620 26178 26190 47489 47489 168 0.006144078172155787 SLLDVAVHM 9 Oxidation (M) _SLLDVAVHM(Oxidation (M))_ SLLDVAVHM(1) SLLDVAVHM(110) 0 0 1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS UPN47_class_I_Rep_3 4 500.75994873046875 2 500.760235 999.505917 0.24438 0.00012238 -0.53249 -0.00026665 -0.28811 -0.00014427 500.7597901224633 54.487 0.55249 57.672 57.356 57.909 3.1856 62 35 2 0 0 0 0.0072765 1 12377 12377 112.59 61.738 1 172030 41438 5620 26178 26190 47490 47490 168 0.006144078172155787 SLLEDERPGV 10 Unmodified _SLLEDERPGV_ 0 0 0 REV__ENST00000317897.4_1_3:184428634-184428682:-|nuORF REV__ENST00000317897.4_1_3:184428634-184428682:-|nuORF MSMS UPN47_class_I_Rep_3 4 557.788818359375 2 557.790578 1113.5666 NaN NaN NaN NaN NaN NaN NaN 41.464 1 44.702 44.202 45.202 3.2372 0 0 0 0.53105 1 8413 8413 2.9952 0.26005 1 + 41439 21724 26179 26191 47491 47491 0.014362164011345158 SLLEEWNSSH 10 Unmodified _SLLEEWNSSH_ 0 0 0 REV__L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|211|3|anti-sense REV__L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|211|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 601.276611328125 2 601.277835 1200.54112 0.42681 0.00025663 -0.23662 -0.00014227 0.19019 0.00011436 601.2777347791182 78.327 0.52393 81.756 81.597 82.121 3.4289 87 53 2 0 0 0 0.55724 1 19442 19442 4.5289 1.2476 1 240870 + 41440 26567 26180 26192 47492 47492 -0.0511325812128689 SLLEKEKL 8 Unmodified _SLLEKEKL_ 0 0 0 ENSG00000036672|ENST00000260187|USP2 ENSG00000036672|ENST00000260187|USP2 ENSG00000036672|ENST00000260187|USP2 MULTI-MSMS UPN47_class_I_Rep_3 4 480.29217529296875 2 480.292225 958.569897 0.0033926 1.6294E-06 0.03307 1.5883E-05 0.036462 1.7513E-05 480.29209977670075 59.9 0.89924 63.065 62.59 63.49 3.1651 89 59 2 0 0 0 0.82752 1 13931 13931 10.074 0 1 230140 41441 851 26181 26193 47493 47493 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS UPN47_class_I_Rep_1 2 480.2915954589844 2 480.292225 958.569897 0.1527 7.3341E-05 -0.096306 -4.6255E-05 0.056395 2.7086E-05 480.2920066335922 59.317 0.77223 62.734 62.514 63.286 3.4171 88 52 2 0 0 0 0.22932 1 13846 13846 18.373 1.2602 1 205300 41442 2489 26182 26194 47494 47494 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2918701171875 2 480.292225 958.569897 0.23416 0.00011247 -0.31994 -0.00015367 -0.085781 -4.12E-05 480.29199239320513 59.605 0.76376 62.878 62.581 63.345 3.2731 82 47 2 0 0 0 0.13455 2 13963 13963;14001 27.223 1.2602 1 317240 41443 2489 26182 26194 47495;47496 47495 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS UPN47_class_I_Rep_3 4 480.29205322265625 2 480.292225 958.569897 0.0033926 1.6294E-06 0.03307 1.5883E-05 0.036462 1.7513E-05 480.29209977670075 59.9 0.89924 63.065 62.59 63.49 3.1651 89 59 2 0 0 0 0.15547 1 14016 14016 24.991 0 1 230140 41444 2489 26182 26194 47497 47497 0.08895511245816579 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MULTI-MSMS UPN47_class_I_Rep_1 2 529.8082275390625 2 529.808239 1057.60193 0.30204 0.00016003 -0.14957 -7.9243E-05 0.15247 8.0782E-05 529.8081238253899 67.55 0.97957 70.911 70.504 71.483 3.3611 223 77 3 0 0 0 0.0047467 6 16352 16186;16228;16265;16308;16352;16388 139.78 0 1 1546300 41445 1388 26183 26195 47498;47499;47500;47501;47502;47503 47502 0.07542878928961727 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MULTI-MSMS UPN47_class_I_Rep_2 3 529.8082885742188 2 529.808239 1057.60193 0.16584 8.7865E-05 -0.070048 -3.7112E-05 0.095796 5.0753E-05 529.8081655202908 67.766 1.1896 71.03 70.648 71.838 3.2636 185 102 4 0 0 0 0.001952 6 16362 16327;16362;16397;16436;16471;16546 151.48 0 1 1213100 41446 1388 26183 26195 47504;47505;47506;47507;47508;47509 47505 0.07542878928961727 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MULTI-MSMS UPN47_class_I_Rep_3 4 529.8082885742188 2 529.808239 1057.60193 0.37722 0.00019986 -0.1487 -7.8783E-05 0.22852 0.00012107 529.8081088416831 67.905 1.2533 71.102 70.606 71.859 3.1972 252 92 4 0 0 0 0.001952 5 16458 16383;16458;16494;16537;16579 151.48 0 1 1188500 41447 1388 26183 26195 47510;47511;47512;47513;47514 47511 0.07542878928961727 SLLFLVGGEI 10 Unmodified _SLLFLVGGEI_ 0 0 0 L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|77|2|anti-sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|77|2|anti-sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|77|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.3076171875 2 524.307875 1046.6012 0.28246 0.0001481 -0.29487 -0.0001546 -0.012402 -6.5023E-06 524.3075170705722 69.239 0.80854 72.607 72.218 73.026 3.3678 179 67 4 0 0 0 0.52083 1 16814 16814 9.3831 0.63772 1 926060 41448 12277 26184 26196 47515 47515 0.07976084279903262 SLLGDTVEKI 10 Unmodified _SLLGDTVEKI_ 0 0 0 ENST00000488307.5_1_9:130565203-130570042:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS ENST00000488307.5_1_9:130565203-130570042:+|nuORF ENST00000488307.5_1_9:130565203-130570042:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 537.8057861328125 2 537.805697 1073.59684 0.34715 0.0001867 -0.87778 -0.00047208 -0.53063 -0.00028538 537.8054405393929 67.504 0.10083 70.865 70.841 70.941 3.3611 15 7 3 0 0 0 0.22181 1 16241 16241 53.404 0 1 202470 41449 2993 26185 26197 47516 47516 0.06298575066330159 SLLGDTVEKI 10 Unmodified _SLLGDTVEKI_ 0 0 0 ENST00000488307.5_1_9:130565203-130570042:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS ENST00000488307.5_1_9:130565203-130570042:+|nuORF ENST00000488307.5_1_9:130565203-130570042:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 537.805697 1073.59684 0.41741 0.00022449 -0.69865 -0.00037574 -0.28124 -0.00015125 537.8056187768918 67.643 0.070023 70.834 70.795 70.865 3.1914 -0.015121 0.00012001 NaN 53.404 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 57536 41450 2993 26185 26197 0.06298575066330159 SLLGGLLLVD 10 Unmodified _SLLGGLLLVD_ 0 0 0 HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|9|1|sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|9|1|sense HSMAR1_dup232|chr5:177168761-177169867:-|1.065868893862579|0.035772007741517|4.9|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 500.325927734375 2 500.307875 998.601197 NaN NaN NaN NaN NaN NaN NaN 69.79 1 73.25 72.75 73.75 3.4598 0 0 0 0.53105 1 16215 16215 3.2813 0 1 41451 8426 26186 26198 47517 47517 0.10184084279899253 SLLGKLQFGI 10 Unmodified _SLLGKLQFGI_ 0 0 0 REV__L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|279|3|anti-sense REV__L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|279|3|anti-sense MSMS UPN47_class_I_Rep_2 3 538.3280639648438 2 538.329142 1074.64373 NaN NaN NaN NaN NaN NaN NaN 107.57 1 111.1 110.6 111.6 3.5345 0 0 0 0.53105 1 26031 26031 8.7454 0 1 + 41452 29069 26187 26199 47518 47518 0.10939479408125408 SLLHMSSEL 9 Unmodified _SLLHMSSEL_ 0 0 0 L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|128|2|anti-sense L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|128|2|anti-sense L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|128|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 508.757568359375 2 508.757692 1015.50083 -0.11179 -5.6876E-05 0.1011 5.1437E-05 -0.01069 -5.4387E-06 508.757581483632 44.632 1.0029 47.988 47.477 48.48 3.3555 102 65 2 0 0 0 0.18929 3 9335 9245;9292;9335 21.747 0 1 151490 41453 11831 26188 26200 47519;47520;47521 47521 -0.006298960453932523 SLLIHFHFN 9 Unmodified _SLLIHFHFN_ 0 0 0 L1MEf_dup103|chr1:42214502-42215875:+|1.0662020264099603|0.0414612042454377|4.68|151.0|73|2|anti-sense L1MEf_dup103|chr1:42214502-42215875:+|1.0662020264099603|0.0414612042454377|4.68|151.0|73|2|anti-sense L1MEf_dup103|chr1:42214502-42215875:+|1.0662020264099603|0.0414612042454377|4.68|151.0|73|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3035888671875 2 564.303458 1126.59236 0.47209 0.0002664 0.29843 0.00016841 0.77053 0.00043481 564.3034037908269 81.29 0.97658 84.613 84.084 85.061 3.3231 185 110 2 0 0 0 0.33654 1 20330 20330 11.64 0 1 222780 41454 13226 26189 26201 47522 47522 0.0341315543410019 SLLIPPPHHI 10 Unmodified _SLLIPPPHHI_ 0 0 0 REV__L1PB3_dup3158|chr16:53853327-53855315:-|1.062902531717513|0.0266691472331728|5.32|151.0|92|2|anti-sense REV__L1PB3_dup3158|chr16:53853327-53855315:-|1.062902531717513|0.0266691472331728|5.32|151.0|92|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.3350830078125 2 562.334759 1122.65496 0.49269 0.00027706 -0.45019 -0.00025316 0.042498 2.3898E-05 562.3343212586504 109.22 0.75874 112.89 112.81 113.57 3.6715 192 102 2 0 0 0 0.56309 1 26152 26152 1.6526 0 1 3580200 + 41455 30566 26190 26202 47523 47523 0.09854301502286944 SLLIRRNA 8 Unmodified _SLLIRRNA_ 0 0 0 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MSMS UPN48_class_I_Rep_1 5 471.79638671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 45.098 1 48.614 48.114 49.114 3.5162 0 0 0 0.40604 1 8661 8661 2.5775 0 1 + 41456 19946 26191 26203 47524 47524 0.1039228863688777 SLLKHRLTWL 10 Unmodified _SLLKHRLTWL_ 0 0 0 REV__HERVL-int_dup1751|chr11:60217061-60217544:+|1.188142988826442|0.0356101333560373|5.06|146.0|3|1|sense REV__HERVL-int_dup1751|chr11:60217061-60217544:+|1.188142988826442|0.0356101333560373|5.06|146.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 633.8878173828125 2 633.88769 1265.76083 NaN NaN NaN NaN NaN NaN NaN 84.169 1 87.863 87.363 88.363 3.6937 0 0 0 0.53105 1 20030 20030 1.4819 0 1 + 41457 23860 26192 26204 47525 47525 0.13857637347746277 SLLKKLLEPNP 11 Unmodified _SLLKKLLEPNP_ 0 0 0 nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;ENSG00000169302|ENST00000397936|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A nc|ENSG00000169302|Q8WU08-3|STK32A MSMS UPN47_class_I_Rep_3 4 626.8701171875 2 626.387188 1250.75982 NaN NaN NaN NaN NaN NaN NaN 60.473 1 63.639 63.139 64.139 3.1651 0 0 0 0.38417 1 14203 14203 2.4985 1.0166 1 41458 4416 26193 26205 47526 47526 0.14447378188197035 SLLLARKKG 9 Unmodified _SLLLARKKG_ 0 0 0 REV__ENSG00000131944|ENST00000588258|FAAP24 REV__ENSG00000131944|ENST00000588258|FAAP24 MULTI-MSMS UPN47_class_I_Rep_1 2 493.3292541503906 2 493.329476 984.6444 -0.32586 -0.00016076 0.15299 7.5474E-05 -0.17287 -8.5282E-05 493.3294878421377 20.945 0.74136 24.589 24.252 24.994 3.6436 140 80 2 0 0 0 0.33654 2 2186 2154;2186 11.64 0 1 143820 + 41459 18992 26194 26206 47527;47528 47528 0.1514631884784876 SLLLARKKG 9 Unmodified _SLLLARKKG_ 0 0 0 REV__ENSG00000131944|ENST00000588258|FAAP24 REV__ENSG00000131944|ENST00000588258|FAAP24 MULTI-MSMS UPN47_class_I_Rep_2 3 493.3283996582031 2 493.329476 984.6444 -0.11878 -5.8598E-05 -0.15638 -7.7148E-05 -0.27516 -0.00013575 493.3293635152112 21.525 1.1546 24.949 24.519 25.673 3.4241 188 126 2 0 0 0 0.33654 2 2419 2378;2419 11.64 0 1 99396 + 41460 18992 26194 26206 47529;47530 47530 0.1514631884784876 SLLLDLPLF 9 Unmodified _SLLLDLPLF_ 0 0 0 L1MC4a_dup5382|chr9:92397630-92398788:-|1.6436993503430513|0.0210319066155928|6.29|151.0|75|2|anti-sense L1MC4a_dup5382|chr9:92397630-92398788:-|1.6436993503430513|0.0210319066155928|6.29|151.0|75|2|anti-sense L1MC4a_dup5382|chr9:92397630-92398788:-|1.6436993503430513|0.0210319066155928|6.29|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_3 4 515.815673828125 2 515.812793 1029.61103 NaN NaN NaN NaN NaN NaN NaN 82.816 1 86.153 85.653 86.653 3.337 0 0 0 0.29868 1 20760 20760 10.824 0 1 41461 11594 26195 26207 47531 47531 0.09741272285282321 SLLLEFLLF 9 Unmodified _SLLLEFLLF_ 0 0 0 HAL1_dup22569|chr22:40151588-40152303:+|1.736843031670399|0.0858451095006732|4.34|151.0|40|2|anti-sense HAL1_dup22569|chr22:40151588-40152303:+|1.736843031670399|0.0858451095006732|4.34|151.0|40|2|anti-sense HAL1_dup22569|chr22:40151588-40152303:+|1.736843031670399|0.0858451095006732|4.34|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.8265380859375 2 547.828443 1093.64233 NaN NaN NaN NaN NaN NaN NaN 89.213 1 92.887 92.387 93.387 3.6738 0 0 0 0.39428 1 22303 22303 2.0598 0 1 41462 7873 26196 26208 47532 47532 0.09925845319367 SLLLRIGEV 9 Unmodified _SLLLRIGEV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS UPN47_class_I_Rep_1 2 500.31353759765625 2 500.313492 998.612431 0.16928 8.4694E-05 0.1487 7.4396E-05 0.31798 0.00015909 500.3134882113105 72.316 0.98106 75.696 75.155 76.136 3.3799 135 76 3 0 0 0 0.081756 5 17674 17558;17595;17674;17754;17796 38.176 0 1 223700 41463 5358 26197 26209 47533;47534;47535;47536;47537 47535 0.11306906374045411 SLLLRIGEV 9 Unmodified _SLLLRIGEV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS UPN47_class_I_Rep_1 2 500.3144836425781 2 500.313492 998.612431 0.17368 8.6892E-05 0.71778 0.00035911 0.89145 0.00044601 500.3138867512127 73.097 0.44638 76.483 76.142 76.588 3.3861 41 27 2 0 0 0 0.17897 2 17838 17838;17927 22.736 0 1 680690 41464 5358 26197 26209 47538;47539 47538 0.11306906374045411 SLLLRIGEV 9 Unmodified _SLLLRIGEV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MSMS UPN47_class_I_Rep_1 2 500.31365966796875 2 500.313492 998.612431 NaN NaN NaN NaN NaN NaN NaN 73.45 1 76.836 76.336 77.336 3.3861 0 0 0 0.37891 1 18036 18036 5.7319 0 1 41465 5358 26197 26209 47540 47540 0.11306906374045411 SLLLRIGEV 9 Unmodified _SLLLRIGEV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS UPN47_class_I_Rep_2 3 500.3138122558594 2 500.313492 998.612431 0.20747 0.0001038 0.15834 7.9221E-05 0.36581 0.00018302 500.31350759859214 72.819 1.064 76.116 75.437 76.501 3.2971 146 91 2 0 0 0 0.10568 8 17737 17677;17700;17737;17771;17884;17916;17927;17970 32.786 0 1 497440 41466 5358 26197 26209 47541;47542;47543;47544;47545;47546;47547;47548 47543 0.11306906374045411 SLLLRIGEV 9 Unmodified _SLLLRIGEV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS UPN47_class_I_Rep_3 4 500.3133239746094 2 500.313492 998.612431 0.24173 0.00012094 0.081728 4.089E-05 0.32346 0.00016183 500.31346077067286 72.73 1.3763 75.957 75.462 76.838 3.2271 159 118 3 0 0 0 0.10568 8 17845 17800;17803;17845;17863;18007;18021;18087;18162 32.786 0 1 174740 41467 5358 26197 26209 47549;47550;47551;47552;47553;47554;47555;47556 47551 0.11306906374045411 SLLLVVVRTQ 10 Unmodified _SLLLVVVRTQ_ 0 0 0 ENST00000496469.1_1_3:48667303-48668690:-|nuORF;ENST00000489483.5_1_3:48665668-48668656:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6 ENST00000496469.1_1_3:48667303-48668690:-|nuORF ENST00000496469.1_1_3:48667303-48668690:-|nuORF MSMS UPN48_class_I_Rep_1 5 564.3587036132812 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 67.873 1 71.324 70.824 71.824 3.4517 0 0 0 0.53105 1 15633 15633 1.3295 0 1 41468 5661 26198 26210 47557 47557 0.14910839845242663 SLLMRRPRR 9 Unmodified _SLLMRRPRR_ 0 0 0 REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 592.8621215820312 2 592.861483 1183.70841 0.41101 0.00024367 -0.078483 -4.653E-05 0.33252 0.00019714 592.8612586354269 108.68 0.59694 112.31 112.17 112.76 3.6321 225 71 4 0 0 0 0.46434 1 26273 26273 4.3292 4.3292 1 57841000 + 41469 23118 26199 26211 47558 47558 0.12390775733138071 SLLMRRPRR 9 Unmodified _SLLMRRPRR_ 0 0 0 REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 592.861483 1183.70841 0.5107 0.00030278 0.012146 7.2012E-06 0.52285 0.00030998 592.8613175525632 108.68 0.64468 112.32 112.17 112.81 3.6355 0.017015 4.1373E-05 NaN 4.3292 176 59 4 NaN NaN NaN NaN 0 NaN NaN 0 104350000 + 41470 23118 26199 26211 0.12390775733138071 SLLMRRPRR 9 Unmodified _SLLMRRPRR_ 0 0 0 REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 592.861483 1183.70841 0.63487 0.00037639 0.012633 7.4896E-06 0.6475 0.00038388 592.8613408104071 108.68 0.61596 112.21 112.07 112.69 3.5333 -0.090671 4.195E-05 NaN 4.3292 256 71 4 NaN NaN NaN NaN 0 NaN NaN 0 90641000 + 41471 23118 26199 26211 0.12390775733138071 SLLMRRPRR 9 Unmodified _SLLMRRPRR_ 0 0 0 REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 592.861483 1183.70841 0.50806 0.00030121 0.068483 4.0601E-05 0.57654 0.00034181 592.8614005172028 108.68 0.64187 112.22 112.07 112.72 3.5382 -0.08157 0.00010817 NaN 4.3292 242 73 4 NaN NaN NaN NaN 0 NaN NaN 0 97749000 + 41472 23118 26199 26211 0.12390775733138071 SLLMRRPRR 9 Unmodified _SLLMRRPRR_ 0 0 0 REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 592.861483 1183.70841 0.48392 0.0002869 -0.12397 -7.3495E-05 0.35995 0.0002134 592.8612287953518 108.73 0.66111 112.4 112.18 112.84 3.6746 0.10052 -0.00012002 NaN 4.3292 207 69 4 NaN NaN NaN NaN 0 NaN NaN 0 56161000 + 41473 23118 26199 26211 0.12390775733138071 SLLMRRPRR 9 Unmodified _SLLMRRPRR_ 0 0 0 REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF REV__ENST00000578921.5_1_18:9708200-9775327:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 592.861483 1183.70841 0.51865 0.00030749 0.0067017 3.9732E-06 0.52535 0.00031146 592.8612764824537 108.67 0.66222 112.35 112.18 112.84 3.6751 0.045746 3.4917E-05 NaN 4.3292 204 75 4 NaN NaN NaN NaN 0 NaN NaN 0 67176000 + 41474 23118 26199 26211 0.12390775733138071 SLLMRTPVI 9 Unmodified _SLLMRTPVI_ 0 0 0 MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|23|2|anti-sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|23|2|anti-sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.30810546875 2 515.309895 1028.60524 NaN NaN NaN NaN NaN NaN NaN 67.253 1 70.75 70.25 71.25 3.4964 0 0 0 0.10941 1 15429 15429 22.736 3.2973 1 41475 16316 26200 26212 47559 47559 0.09207850501957182 SLLMRTPVI 9 Unmodified _SLLMRTPVI_ 0 0 0 MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|23|2|anti-sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|23|2|anti-sense MLT1C_dup7577|chr6:166951883-166952324:+|1.5698023885470092|0.0847190396284457|4.21|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 515.3080444335938 2 515.309895 1028.60524 NaN NaN NaN NaN NaN NaN NaN 67.187 1 70.695 70.195 71.195 3.5077 0 0 0 0.085573 1 15319 15319 27.629 2.9549 1 41476 16316 26200 26212 47560 47560 0.09207850501957182 SLLNELEKI 9 Unmodified _SLLNELEKI_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS UPN46_class_I_Rep_3 1 529.808349609375 2 529.808239 1057.60193 0.30035 0.00015913 -0.50828 -0.00026929 -0.20793 -0.00011016 529.8079268949022 74.018 0.12873 74.018 73.949 74.078 0 16 11 2 0 0 0 0.16799 1 17171 17171 23.79 0 1 464730 + 41477 20479 26201 26213 47561 47561 0.07542878928961727 SLLNELEKI 9 Unmodified _SLLNELEKI_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS UPN47_class_I_Rep_1 2 529.8079223632812 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 68.89 1 72.258 71.758 72.758 3.3678 0 0 0 0.10427 1 16660 16660 23.79 0 1 + 41478 20479 26201 26213 47562 47562 0.07542878928961727 SLLNELEKI 9 Unmodified _SLLNELEKI_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS UPN47_class_I_Rep_2 3 529.8072509765625 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 68.783 1 72.052 71.552 72.552 3.2696 0 0 0 0.21832 1 16666 16666 15.248 0 1 + 41479 20479 26201 26213 47563 47563 0.07542878928961727 SLLQKFKKE 9 Unmodified _SLLQKFKKE_ 0 0 0 REV__ENSG00000162843|ENST00000437684|WDR64 REV__ENSG00000162843|ENST00000437684|WDR64 MSMS UPN48_class_I_Rep_2 6 560.842041015625 2 560.839874 1119.66519 NaN NaN NaN NaN NaN NaN NaN 96.697 1 100.48 99.977 100.98 3.7804 0 0 0 0.39518 1 22973 22973 1.8442 0 1 + 41480 19945 26202 26214 47564 47564 0.11014864436856442 SLLRHRRR 8 Unmodified _SLLRHRRR_ 0 0 0 REV__chr7:75157970-75159425|32|20.28|0.54|5.24|-|0|TE_info:AluJr,AluJr_dup32623,Alu,SINE,donor,+,75159425,75159534|NCF1C,None|2 REV__chr7:75157970-75159425|32|20.28|0.54|5.24|-|0|TE_info:AluJr,AluJr_dup32623,Alu,SINE,donor,+,75159425,75159534|NCF1C,None|2 MSMS UPN47_class_I_Rep_2 3 547.3321533203125 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 89.812 1 93.27 92.77 93.77 3.4571 0 0 0 0.40604 1 22306 22306 2.5775 0 1 + 41481 17456 26203 26215 47565 47565 0.13144695636560755 SLLRHRRR 8 Unmodified _SLLRHRRR_ 0 0 0 REV__chr7:75157970-75159425|32|20.28|0.54|5.24|-|0|TE_info:AluJr,AluJr_dup32623,Alu,SINE,donor,+,75159425,75159534|NCF1C,None|2 REV__chr7:75157970-75159425|32|20.28|0.54|5.24|-|0|TE_info:AluJr,AluJr_dup32623,Alu,SINE,donor,+,75159425,75159534|NCF1C,None|2 MSMS UPN47_class_I_Rep_2 3 547.3446655273438 2 547.344315 1092.67408 NaN NaN NaN NaN NaN NaN NaN 90.309 1 93.767 93.267 94.267 3.4571 0 0 0 0.40746 1 22411 22411 0.69038 0 1 + 41482 17456 26203 26215 47566 47566 0.13144695636560755 SLLRLEPL 8 Unmodified _SLLRLEPL_ 0 0 0 REV__MER1B_dup2971|chr9:77860475-77860690:-|1.3916937344374856|0.0071840990203537|7.6|150.0|5|2|sense REV__MER1B_dup2971|chr9:77860475-77860690:-|1.3916937344374856|0.0071840990203537|7.6|150.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 470.7946472167969 2 470.794935 939.575317 -0.31312 -0.00014742 -0.32219 -0.00015168 -0.63531 -0.0002991 470.79479410062976 37.442 1.1937 41.108 40.687 41.881 3.6652 232 90 3 0 0 0 0.82752 1 7010 7010 5.2307 0 1 410080 + 41483 31129 26204 26216 47567 47567 0.10311234828270699 SLLRLMLRF 9 Unmodified _SLLRLMLRF_ 0 0 0 L1ME2_dup1235|chr2:28304982-28305811:-|1.1761044452124725|0.1852095632736152|2.67|151.0|44|2|anti-sense L1ME2_dup1235|chr2:28304982-28305811:-|1.1761044452124725|0.1852095632736152|2.67|151.0|44|2|anti-sense L1ME2_dup1235|chr2:28304982-28305811:-|1.1761044452124725|0.1852095632736152|2.67|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_3 7 574.8516845703125 2 574.852261 1147.68997 NaN NaN NaN NaN NaN NaN NaN 114.51 1 118.16 117.66 118.66 3.6511 0 0 0 0.4007 1 27229 27229 0.52476 0 1 41484 12474 26205 26217 47568 47568 0.1220322103856688 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MSMS UPN47_class_I_Rep_1 2 484.7881774902344 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.261 1 45.94 45.44 46.44 3.6792 0 0 0 0.40364 1 8573 8573 5.7604 2.8712 1 + 41485 19389 26206 26218 47569 47569 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MSMS UPN47_class_I_Rep_2 3 484.787841796875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 37.529 1 40.928 40.428 41.428 3.3988 0 0 0 0.39819 1 7167 7167 8.5933 2.8329 1 + 41486 19389 26206 26218 47570 47570 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MSMS UPN47_class_I_Rep_2 3 484.78765869140625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 37.664 1 41.052 40.552 41.552 3.3879 0 0 0 0.39819 1 7208 7208 8.5933 2.8329 1 + 41487 19389 26206 26218 47571 47571 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MSMS UPN47_class_I_Rep_2 3 484.7877197265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 38.344 1 41.732 41.232 42.232 3.3879 0 0 0 0.39819 1 7413 7413 8.5933 2.8329 1 + 41488 19389 26206 26218 47572 47572 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MSMS UPN48_class_I_Rep_2 6 484.7879638671875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 56.674 1 60.207 59.707 60.707 3.5333 0 0 0 0.39819 1 12191 12191 8.5933 2.8329 1 + 41489 19389 26206 26218 47573 47573 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MSMS UPN48_class_I_Rep_2 6 484.78704833984375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 60.437 1 63.915 63.415 64.415 3.4785 0 0 0 0.40364 1 13347 13347 5.7604 2.8712 1 + 41490 19389 26206 26218 47574 47574 0.07525787750944346 SLLRTLLVG 9 Unmodified _SLLRTLLVG_ 0 0 0 MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|23|3|anti-sense MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|23|3|anti-sense MLT1C_dup186|chr1:9656966-9657350:-|1.4417579943462326|0.0029643759503083|8.93|151.0|23|3|anti-sense MSMS UPN46_class_I_Rep_3 1 486.7840881347656 2 486.316035 970.617516 NaN NaN NaN NaN NaN NaN NaN 99.908 1 99.908 99.408 100.41 0 0 0 0 0.39326 1 24350 24350 2.3027 0 1 41491 16308 26207 26219 47575 47575 0.13103210236681662 SLLSELQHA 9 Unmodified _SLLSELQHA_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS UPN46_class_I_Rep_3 1 499.26812744140625 2 499.269281 996.52401 0.24213 0.00012089 -0.45498 -0.00022716 -0.21285 -0.00010627 499.26908199695583 63.264 0.15702 63.264 63.176 63.333 0 28 16 3 0 0 0 0.11355 1 14182 14182 31.268 16.687 1 139800 41492 3671 26208 26220 47576 47576 0.02560866063561207 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.285400390625 2 513.284931 1024.55531 0.23371 0.00011996 0.43786 0.00022475 0.67157 0.00034471 513.2851430540306 56.611 0.59056 60.068 59.759 60.349 3.4572 61 35 3 0 0 0 0.0059033 2 12952 12913;12952 81.89 25.713 1 422150 41493 2195 26209 26221 47577;47578 47578 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.2855834960938 2 513.284931 1024.55531 0.23832 0.00012232 0.20848 0.00010701 0.4468 0.00022933 513.2850957791414 56.792 0.27816 60.249 60.201 60.479 3.4572 44 23 2 0 0 0 0.0059033 2 12994 12994;13037 81.89 25.713 1 403040 41494 2195 26209 26221 47579;47580 47579 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.28564453125 2 513.284931 1024.55531 0.24149 0.00012395 0.28925 0.00014847 0.53074 0.00027242 513.2849779295505 57.104 0.15713 60.562 60.479 60.636 3.4572 25 14 2 0 0 0 0.097406 2 13080 13075;13080 34.402 9.0024 1 146980 41495 2195 26209 26221 47581;47582 47582 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 513.284912109375 2 513.284931 1024.55531 0.18419 9.4539E-05 0.40754 0.00020919 0.59173 0.00030373 513.2850916762794 57.109 0.7672 60.401 59.944 60.712 3.2912 93 66 3 0 0 0 0.0054033 2 13137 13099;13137 78.728 15.859 1 425540 41496 2195 26209 26221 47583;47584 47584 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MSMS UPN47_class_I_Rep_2 3 513.2854614257812 2 513.284931 1024.55531 NaN NaN NaN NaN NaN NaN NaN 57.494 1 60.785 60.285 61.285 3.2912 0 0 0 0.05227 1 13242 13242 36.127 5.4905 1 41497 2195 26209 26221 47585 47585 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.2853393554688 2 513.284931 1024.55531 0.20421 0.00010482 0.56707 0.00029107 0.77128 0.00039589 513.2851896606539 57.115 0.45242 60.283 60.117 60.57 3.1681 80 41 2 0 0 0 0.013473 5 13224 13138;13175;13213;13224;13254 99.799 24.87 1 427620 41498 2195 26209 26221 47586;47587;47588;47589;47590 47589 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2 ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENST00000376664.10_1_1:11735929-11741152:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.2852783203125 2 513.284931 1024.55531 0.18643 9.5691E-05 0.19028 9.7668E-05 0.37671 0.00019336 513.2849945398051 57.705 0.37766 60.874 60.796 61.174 3.1681 47 30 2 0 0 0 0.052902 1 13348 13348 47.749 17.112 1 119180 41499 2195 26209 26221 47591 47591 0.04401439097682669 SLLSLLAFY 9 Unmodified _SLLSLLAFY_ 0 0 0 REV__L1MC4_dup5745|chr3:196648166-196648484:-|2.4982989865565477|0.0279923323740622|6.48|151.0|15|1|anti-sense REV__L1MC4_dup5745|chr3:196648166-196648484:-|2.4982989865565477|0.0279923323740622|6.48|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_2 3 513.7970581054688 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 83.592 1 87.003 86.503 87.503 3.4116 0 0 0 0.40038 1 20841 20841 0.6015 0 1 + 41500 26931 26210 26222 47592 47592 0.06796699251208338 SLLSNLDEV 9 Unmodified _SLLSNLDEV_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_1 2 495.26092529296875 2 495.261122 988.507691 0.13677 6.7738E-05 0.3084 0.00015274 0.44517 0.00022048 495.2611650697625 70.851 0.49506 74.222 73.838 74.334 3.3713 59 42 2 0 0 0 0.079935 2 17241 17202;17241 38.615 0 1 136560 41501 4463 26211 26223 47593;47594 47594 0.012977401068042127 SLLSNLDEV 9 Unmodified _SLLSNLDEV_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_2 3 495.2612609863281 2 495.261122 988.507691 0.2346 0.00011619 0.10952 5.4241E-05 0.34412 0.00017043 495.2610947103872 71.07 0.51956 74.352 74.046 74.566 3.2828 73 47 2 0 0 0 0.22932 2 17315 17315;17354 18.373 0 1 125070 41502 4463 26211 26223 47595;47596 47595 0.012977401068042127 SLLSNLDEV 9 Unmodified _SLLSNLDEV_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_3 4 495.76239013671875 2 495.261122 988.507691 0.22096 0.00010944 -0.15868 -7.8586E-05 0.062288 3.0849E-05 495.2610386542476 70.916 0.30194 74.127 73.903 74.205 3.2113 36 24 2 0 0 0 0.17979 2 17363 17357;17363 22.658 0 1 118730 41503 4463 26211 26223 47597;47598 47598 0.012977401068042127 SLLSNLDEV 9 Unmodified _SLLSNLDEV_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS UPN47_class_I_Rep_3 4 495.26141357421875 2 495.261122 988.507691 0.22151 0.0001097 0.32296 0.00015995 0.54446 0.00026965 495.2612370924979 71.073 0.38784 74.285 74.188 74.575 3.2113 45 34 2 0 0 0 0.05757 2 17442 17405;17442 45.74 0 1 163420 41504 4463 26211 26223 47599;47600 47600 0.012977401068042127 SLLSVRVF 8 Unmodified _SLLSVRVF_ 0 0 0 ENSG00000154928|ENST00000398015|EPHB1 ENSG00000154928|ENST00000398015|EPHB1 ENSG00000154928|ENST00000398015|EPHB1 MSMS UPN46_class_I_Rep_3 1 460.78314208984375 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 108.79 1 108.79 108.29 109.29 0 0 0 0 0.39819 1 26633 26633 8.5933 0 1 41505 3687 26212 26224 47601 47601 0.08610965656805547 SLLTATTRR 9 Unmodified _SLLTATTRR_ 0 0 0 MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|116|2|sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|116|2|sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|116|2|sense MSMS UPN48_class_I_Rep_1 5 509.8041076660156 2 509.803823 1017.59309 NaN NaN NaN NaN NaN NaN NaN 78.389 1 81.911 81.411 82.411 3.5221 0 0 0 0.39518 1 18695 18695 1.8442 0 1 41506 16055 26213 26225 47602 47602 0.08499950083125896 SLLTCLVDLI 10 Unmodified _SLLTCLVDLI_ 0 0 0 L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|223|2|anti-sense L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|223|2|anti-sense L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|223|2|anti-sense MSMS UPN46_class_I_Rep_3 1 545.31640625 2 545.314843 1088.61513 NaN NaN NaN NaN NaN NaN NaN 87.384 1 87.384 86.884 87.884 0 0 0 0 0.53105 1 20934 20934 5.7319 0 1 41507 14614 26214 26226 47603 47603 0.07436993716692086 SLLTCLVDLI 10 Unmodified _SLLTCLVDLI_ 0 0 0 L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|223|2|anti-sense L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|223|2|anti-sense L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|223|2|anti-sense MSMS UPN48_class_I_Rep_2 6 545.316650390625 2 545.314843 1088.61513 NaN NaN NaN NaN NaN NaN NaN 82.594 1 86.263 85.763 86.763 3.669 0 0 0 0.53105 1 19618 19618 9.3831 0 1 41508 14614 26214 26226 47604 47604 0.07436993716692086 SLLTNLDR 8 Unmodified _SLLTNLDR_ 0 0 0 REV__L1MA9_dup8859|chr9:96804141-96806405:+|1.8276150990720668|0.0398068017678802|5.52|151.0|56|3|sense REV__L1MA9_dup8859|chr9:96804141-96806405:+|1.8276150990720668|0.0398068017678802|5.52|151.0|56|3|sense MSMS UPN48_class_I_Rep_2 6 466.2765808105469 2 466.263999 930.513445 NaN NaN NaN NaN NaN NaN NaN 107.73 1 111.41 110.91 111.91 3.6783 0 0 0 0.39819 1 25477 25477 8.5933 0 1 + 41509 25649 26215 26227 47605 47605 0.04540883409151775 SLLTSKKTA 9 Unmodified _SLLTSKKTA_ 0 0 0 ENST00000344120.4_1_5:141693677-141693767:-|nuORF ENST00000344120.4_1_5:141693677-141693767:-|nuORF ENST00000344120.4_1_5:141693677-141693767:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 474.7901306152344 2 474.78985 947.565146 0.21191 0.00010061 1.2939 0.00061432 1.5058 0.00071494 474.7903681946862 107.78 0.27821 111.46 111.38 111.66 3.6813 74 29 4 0 0 0 0.30034 1 25442 25442 13.906 0.39817 1 169080000 41510 6250 26216 26228 47606 47606 0.08926627103028295 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MSMS UPN46_class_I_Rep_3 1 491.79571533203125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.94 1 50.94 50.44 51.44 0 0 0 0 0.40472 1 10792 10792 4.3292 0 1 41511 5679 26217 26229 47607 47607 0.08446074267988024 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MSMS UPN47_class_I_Rep_2 3 491.7952575683594 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 55.852 1 59.163 58.663 59.663 3.3102 0 0 0 0.40643 1 12739 12739 2.0598 0 1 41512 5679 26217 26229 47608 47608 0.08446074267988024 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MSMS UPN47_class_I_Rep_2 3 491.796142578125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 69.335 1 72.611 72.111 73.111 3.2761 0 0 0 0.40625 1 16831 16831 2.3027 0 1 41513 5679 26217 26229 47609 47609 0.08446074267988024 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MULTI-MSMS UPN47_class_I_Rep_3 4 491.7955322265625 2 491.795269 981.575986 0.091285 4.4894E-05 3.5504 0.0017461 3.6417 0.0017909 491.7957418425381 47.124 0.85126 50.367 49.906 50.757 3.2439 87 53 2 0 0 0 0.82752 1 10037 10037 4.3292 0 1 86915 41514 5679 26217 26229 47610 47610 0.08446074267988024 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MSMS UPN48_class_I_Rep_1 5 491.79608154296875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 69.297 1 72.752 72.252 73.252 3.4548 0 0 0 0.40472 1 16066 16066 4.3292 0 1 41515 5679 26217 26229 47611 47611 0.08446074267988024 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MSMS UPN48_class_I_Rep_2 6 491.7968444824219 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.97 1 63.457 62.957 63.957 3.4868 0 0 0 0.40472 1 13202 13202 4.3292 0 1 41516 5679 26217 26229 47612 47612 0.08446074267988024 SLLWKAHK 8 Unmodified _SLLWKAHK_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MULTI-MSMS UPN48_class_I_Rep_3 7 491.79608154296875 2 491.795269 981.575986 0.158 7.7702E-05 0.92528 0.00045505 1.0833 0.00053275 491.7958162927706 41.537 0.14537 45.183 45.091 45.236 3.6458 18 13 3 0 0 0 0.82752 1 7515 7515 4.3292 0 1 81184 41517 5679 26217 26229 47613 47613 0.08446074267988024 SLMELVEYY 9 Unmodified _SLMELVEYY_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;nc|ENSG00000134215|Q9UKW4-3|VAV3;ENST00000525460.5_1_1:108115955-108220600:-|nuORF nc|ENSG00000134215|Q9UKW4-2|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS UPN47_class_I_Rep_2 3 574.2754516601562 2 573.773008 1145.53146 0.16761 9.617E-05 1.9437 0.0011152 2.1113 0.0012114 573.773971251032 44.201 0.43724 47.556 47.265 47.703 3.3556 38 23 2 0 0 0 0.40174 1 9207 9207 7.9102 0 1 77549 41518 2838 26218 26230 47614 47614 -0.035481624510339316 SLMKLYGTKLV 11 Unmodified _SLMKLYGTKLV_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|26|1|sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|26|1|sense MSMS UPN47_class_I_Rep_3 4 626.8710327148438 2 626.870317 1251.72608 NaN NaN NaN NaN NaN NaN NaN 60.625 1 63.79 63.29 64.29 3.1651 0 0 0 0.38417 1 14249 14249 2.4985 0 1 + 41519 24129 26219 26231 47615 47615 0.11028633424757572 SLMKLYGTKLV 11 Unmodified _SLMKLYGTKLV_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|26|1|sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|26|1|sense MSMS UPN48_class_I_Rep_1 5 626.8709716796875 2 626.870317 1251.72608 NaN NaN NaN NaN NaN NaN NaN 60.061 1 63.537 63.037 64.037 3.4759 0 0 0 0.38417 1 13252 13252 2.4985 0 1 + 41520 24129 26219 26231 47616 47616 0.11028633424757572 SLMRLMYI 8 Unmodified _SLMRLMYI_ 0 0 0 REV__ENSG00000115593|ENST00000419482|SMYD1 REV__ENSG00000115593|ENST00000419482|SMYD1 MSMS UPN48_class_I_Rep_2 6 513.7777709960938 2 513.777373 1025.54019 NaN NaN NaN NaN NaN NaN NaN 78.2 1 81.822 81.322 82.322 3.6222 0 0 0 0.39996 1 18548 18548 7.9102 0 1 + 41521 18573 26220 26232 47617 47617 0.028445327044664737 SLNAAKQT 8 Unmodified _SLNAAKQT_ 0 0 0 REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 416.7298278808594 2 416.729792 831.445031 -0.13851 -5.7721E-05 0.13018 5.4251E-05 -0.0083252 -3.4694E-06 416.7297565023511 31.707 0.85128 31.707 31.234 32.085 0 96 60 2 0 0 0 0.82752 4 5337 5298;5313;5337;5353 24.021 0 1 197420 + 41522 20581 26221 26233 47618;47619;47620;47621 47620 0.022566388292943884 SLNFIYFCC 9 Unmodified _SLNFIYFCC_ 0 0 0 L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|198|3|anti-sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|198|3|anti-sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|198|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2427368164062 2 555.243363 1108.47217 NaN NaN NaN NaN NaN NaN NaN 19.472 1 23.083 22.583 23.583 3.6118 0 0 0 0.39518 1 1798 1798 1.8442 0 1 41523 9920 26222 26234 47622 47622 -0.0777233694620918 SLNGLEVHL 9 Unmodified _SLNGLEVHL_ 0 0 0 ENST00000493455.6_1_22:26840650-26860128:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4 ENST00000493455.6_1_22:26840650-26860128:-|nuORF ENST00000493455.6_1_22:26840650-26860128:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 491.2719421386719 2 491.271824 980.529095 0.13353 6.5601E-05 0.67367 0.00033096 0.80721 0.00039656 491.27208498659365 56.665 0.80108 60.122 59.775 60.576 3.4572 117 60 2 0 0 0 0.006828 2 13018 12975;13018 100.09 36.13 1 927970 41524 1474 26223 26235 47623;47624 47624 0.03805169926170038 SLNGLEVHL 9 Unmodified _SLNGLEVHL_ 0 0 0 ENST00000493455.6_1_22:26840650-26860128:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4 ENST00000493455.6_1_22:26840650-26860128:-|nuORF ENST00000493455.6_1_22:26840650-26860128:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 491.2719421386719 2 491.271824 980.529095 0.37163 0.00018257 0.50103 0.00024614 0.87266 0.00042871 491.2720044259044 57.109 1.0115 60.4 59.834 60.846 3.2912 163 84 2 0 0 0 0.0058741 5 13106 13010;13028;13106;13150;13155 76.825 31.125 1 568140 41525 1474 26223 26235 47625;47626;47627;47628;47629 47627 0.03805169926170038 SLNGLEVHL 9 Unmodified _SLNGLEVHL_ 0 0 0 ENST00000493455.6_1_22:26840650-26860128:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4 ENST00000493455.6_1_22:26840650-26860128:-|nuORF ENST00000493455.6_1_22:26840650-26860128:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 491.271824 980.529095 0.13668 6.7146E-05 0.96035 0.00047179 1.097 0.00053894 491.2722576489004 57.062 0.88264 60.234 59.931 60.813 3.1721 -0.018033 0.00022533 NaN 76.825 157 79 3 NaN NaN NaN NaN 0 NaN NaN 0 624180 41526 1474 26223 26235 0.03805169926170038 SLNLFWFW 8 Unmodified _SLNLFWFW_ 0 0 0 MER57B2_dup32|chr1:145181279-145181619:-|1.0298361206236557|0.1161545428046169|3.15|147.0|5|1|sense MER57B2_dup32|chr1:145181279-145181619:-|1.0298361206236557|0.1161545428046169|3.15|147.0|5|1|sense MER57B2_dup32|chr1:145181279-145181619:-|1.0298361206236557|0.1161545428046169|3.15|147.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 556.781494140625 2 556.781828 1111.5491 NaN NaN NaN NaN NaN NaN NaN 24.006 1 27.645 27.145 28.145 3.6397 0 0 0 0.40738 1 2716 2716 0.79363 0 1 41527 16126 26224 26236 47630 47630 -0.002210343432125228 SLNLNAGSLY 10 Unmodified _SLNLNAGSLY_ 0 0 0 REV__nc|ENSG00000105388|P06731-2|CEACAM5 REV__nc|ENSG00000105388|P06731-2|CEACAM5 MSMS UPN47_class_I_Rep_1 2 526.2926635742188 2 526.274564 1050.53457 NaN NaN NaN NaN NaN NaN NaN 52.031 1 55.59 55.09 56.09 3.5585 0 0 0 0.53105 1 11548 11548 10.824 2.2306 1 + 41528 18286 26225 26237 47631 47631 0.011328487180207958 SLNLSTPHI 9 Unmodified _SLNLSTPHI_ 0 0 0 REV__L1MD3_dup2240|chr7:157353266-157353583:-|1.1416820198232362|0.0078743422928664|7.18|151.0|25|3|anti-sense REV__L1MD3_dup2240|chr7:157353266-157353583:-|1.1416820198232362|0.0078743422928664|7.18|151.0|25|3|anti-sense MSMS UPN46_class_I_Rep_3 1 491.27081298828125 2 491.271824 980.529095 NaN NaN NaN NaN NaN NaN NaN 62.969 1 62.969 62.469 63.469 0 0 0 0 0.25702 1 14112 14112 13.042 2.2185 1 + 41529 27475 26226 26238 47632 47632 0.03805169926192775 SLNPAGRRLL 10 Unmodified _SLNPAGRRLL_ 0 0 0 ENST00000467423.1_1_1:19565574-19565811:-|nuORF ENST00000467423.1_1_1:19565574-19565811:-|nuORF ENST00000467423.1_1_1:19565574-19565811:-|nuORF MSMS UPN46_class_I_Rep_3 1 548.8349609375 2 548.832914 1095.65128 NaN NaN NaN NaN NaN NaN NaN 32.826 1 32.826 32.326 33.326 0 0 0 0 0.53105 1 5666 5666 1.1933 0 1 41530 6907 26227 26239 47633 47633 0.10727631728423148 SLNRDRAIA 9 Unmodified _SLNRDRAIA_ 0 0 0 AluSq2_dup31069|chrX:1499138-1499462:-|1.5395508035514358|0.0062414000396377|7.95|151.0|10|3|sense AluSq2_dup31069|chrX:1499138-1499462:-|1.5395508035514358|0.0062414000396377|7.95|151.0|10|3|sense AluSq2_dup31069|chrX:1499138-1499462:-|1.5395508035514358|0.0062414000396377|7.95|151.0|10|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 508.2115173339844 2 508.285797 1014.55704 -0.24824 -0.00012618 -2.4474 -0.001244 -2.6956 -0.0013702 508.7861688176089 35.201 0.27018 38.627 38.508 38.778 3.4253 30 16 3 0 0 0 0.12034 1 6439 6439 7.2892 2.5332 1 44613 41531 254 26228 26240 47634 47634 0.05034492906270316 SLPDFGISY 9 Unmodified _SLPDFGISY_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN46_class_I_Rep_3 1 499.745361328125 2 499.745108 997.475663 0.292 0.00014593 0.14081 7.0371E-05 0.43282 0.0002163 499.7451030408476 79.712 0.1917 79.712 79.586 79.778 0 27 16 4 0 0 0 0.16559 1 18721 18721 24.021 4.7636 1 202240 41532 3550 26229 26241 47635 47635 -0.02317627576326231 SLPDFGISY 9 Unmodified _SLPDFGISY_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN46_class_I_Rep_3 1 499.7452392578125 2 499.745108 997.475663 0.29239 0.00014612 0.1447 7.2312E-05 0.43709 0.00021843 499.745052170139 79.847 0.29618 79.847 79.769 80.065 0 43 28 2 0 0 0 0.047711 1 18774 18774 49.933 13.806 1 203660 41533 3550 26229 26241 47636 47636 -0.02317627576326231 SLPDFGISYV 10 Unmodified _SLPDFGISYV_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MSMS UPN46_class_I_Rep_3 1 549.2799682617188 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 86.528 1 86.528 86.028 87.028 0 0 0 0 0.53105 1 20686 20686 13.042 5.7532 1 41534 3550 26230 26242 47637 47637 -0.0003338299648021348 SLPDFGISYV 10 Unmodified _SLPDFGISYV_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN47_class_I_Rep_1 2 549.2791137695312 2 549.279315 1096.54408 0.46371 0.00025471 0.030534 1.6772E-05 0.49425 0.00027148 549.2794922155251 81.676 0.29292 85.188 85.028 85.32 3.5122 42 30 2 0 0 0 0.31818 2 20363 20363;20426 27.629 13.723 1 144630 41535 3550 26230 26242 47638;47639 47638 -0.0003338299648021348 SLPDFGISYV 10 Unmodified _SLPDFGISYV_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MSMS UPN47_class_I_Rep_2 3 549.27978515625 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 81.578 1 84.962 84.462 85.462 3.3839 0 0 0 0.53105 1 20320 20320 13.042 5.4335 1 41536 3550 26230 26242 47640 47640 -0.0003338299648021348 SLPDFGISYV 10 Unmodified _SLPDFGISYV_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MSMS UPN47_class_I_Rep_2 3 549.279541015625 2 549.279315 1096.54408 NaN NaN NaN NaN NaN NaN NaN 81.72 1 85.104 84.604 85.604 3.3839 0 0 0 0.53105 1 20361 20361 13.906 2.2658 1 41537 3550 26230 26242 47641 47641 -0.0003338299648021348 SLPDFGISYV 10 Unmodified _SLPDFGISYV_ 0 0 0 ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 ENSG00000149781|ENST00000345728|FERMT3 MULTI-MSMS UPN47_class_I_Rep_3 4 549.279296875 2 549.279315 1096.54408 0.4659 0.00025591 0.19593 0.00010762 0.66183 0.00036353 549.2795044958445 81.766 0.55944 85.089 84.833 85.393 3.3231 95 60 2 0 0 0 0.3776 3 20450 20411;20450;20489 21.537 8.4945 1 158560 41538 3550 26230 26242 47642;47643;47644 47643 -0.0003338299648021348 SLPDGRKNA 9 Unmodified _SLPDGRKNA_ 0 0 0 ENST00000530958.5_1_11:108094386-108094650:+|nuORF ENST00000530958.5_1_11:108094386-108094650:+|nuORF ENST00000530958.5_1_11:108094386-108094650:+|nuORF MSMS UPN48_class_I_Rep_1 5 479.2601013183594 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 36.466 1 39.973 39.473 40.473 3.507 0 0 0 0.39518 1 6089 6089 1.8442 1.0506 1 41539 7294 26231 26243 47645 47645 0.023951151236133228 SLPDIKVYL 9 Unmodified _SLPDIKVYL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-MSMS UPN47_class_I_Rep_1 2 524.3079223632812 2 524.307875 1046.6012 0.28246 0.0001481 -0.29487 -0.0001546 -0.012402 -6.5023E-06 524.3075170705722 69.239 0.80854 72.607 72.218 73.026 3.3678 179 67 4 0 0 0 0.20317 2 16776 16737;16776 20.415 3.3016 1 926060 41540 4410 26232 26244 47646;47647 47647 0.07976084279880524 SLPDIKVYL 9 Unmodified _SLPDIKVYL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-MSMS UPN47_class_I_Rep_2 3 524.3077392578125 2 524.307875 1046.6012 0.024915 1.3063E-05 -0.26327 -0.00013803 -0.23835 -0.00012497 524.3075691594958 69.587 1.0399 72.863 72.408 73.448 3.2761 242 86 4 0 0 0 0.14216 3 16897 16897;16934;16972 26.268 7.0112 1 732220 41541 4410 26232 26244 47648;47649;47650 47648 0.07976084279880524 SLPDIKVYL 9 Unmodified _SLPDIKVYL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-MSMS UPN47_class_I_Rep_3 4 524.3077392578125 2 524.307875 1046.6012 0.34374 0.00018023 -0.5192 -0.00027222 -0.17546 -9.1995E-05 524.3074973552075 69.668 0.6787 72.872 72.686 73.365 3.2044 144 52 4 0 0 0 0.095207 2 16998 16998;17038 34.932 16.786 1 716990 41542 4410 26232 26244 47651;47652 47651 0.07976084279880524 SLPDIKVYL 9 Unmodified _SLPDIKVYL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-SECPEP UPN47_class_I_Rep_3 4 524.3077392578125 2 524.307875 1046.6012 0.34287 0.00017977 -0.51149 -0.00026818 -0.16861 -8.8406E-05 524.3074633959075 69.459 0.4427 72.663 72.307 72.749 3.2044 88 34 4 0 0 0 0.10629 1 16920 16920 17.113 3.2068 1 830450 41543 4410 26232 26244 47653 47653 0.07976084279880524 SLPDIKVYL 9 Unmodified _SLPDIKVYL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-MATCH UPN47_class_I_Rep_1 2 2 524.307875 1046.6012 0.28423 0.00014902 6.9325 0.0036348 7.2167 0.0037838 524.3113372888255 69.662 0.11152 73.03 72.964 73.076 3.3678 0.1778 0.0076452 NaN 20.415 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 109460 41544 4410 26232 26244 0.07976084279880524 SLPDSNTIT 9 Unmodified _SLPDSNTIT_ 0 0 0 nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS UPN48_class_I_Rep_3 7 474.2391357421875 2 474.237647 946.460741 NaN NaN NaN NaN NaN NaN NaN 104.9 1 108.62 108.12 109.12 3.7192 0 0 0 0.38784 1 24763 24763 3.5965 0.70727 1 41545 2162 26233 26245 47654 47654 -0.014631194443268214 SLPEDFYHF 9 Unmodified _SLPEDFYHF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 577.7611083984375 2 577.761289 1153.50803 0.48272 0.0002789 -0.066446 -3.839E-05 0.41628 0.00024051 577.76114662698 66.642 0.86072 70.093 69.755 70.616 3.4516 102 55 2 0 0 0 0.32219 1 15249 15249 12.532 5.8084 1 257580 41546 946 26234 26246 47655 47655 -0.06258840173336466 SLPEDFYHF 9 Unmodified _SLPEDFYHF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 577.7612915039062 2 577.761289 1153.50803 0.49869 0.00028812 0.055001 3.1777E-05 0.55369 0.0003199 577.7612779847399 66.572 0.93739 70.059 69.598 70.536 3.4866 133 63 3 0 0 0 0.41259 1 15200 15200 7.2892 0 1 323590 41547 946 26234 26246 47656 47656 -0.06258840173336466 SLPEDFYHF 9 Unmodified _SLPEDFYHF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 577.76123046875 2 577.761289 1153.50803 0.52582 0.0003038 -0.076991 -4.4483E-05 0.44883 0.00025932 577.7612140419734 66.509 0.84875 70.017 69.582 70.43 3.5077 101 57 2 0 0 0 0.25207 1 15096 15096 16.942 5.302 1 279210 41548 946 26234 26246 47657 47657 -0.06258840173336466 SLPGEDGPATS 11 Unmodified _SLPGEDGPATS_ 0 0 0 REV__HERV17-int_dup293|chr4:82474680-82478317:+|1.2304174624253577|0.2358412824346031|2.38|151.0|59|2|sense REV__HERV17-int_dup293|chr4:82474680-82478317:+|1.2304174624253577|0.2358412824346031|2.38|151.0|59|2|sense MSMS UPN47_class_I_Rep_1 2 515.7376708984375 2 515.738011 1029.46147 NaN NaN NaN NaN NaN NaN NaN 36.229 1 39.898 39.398 40.398 3.6692 0 0 0 0.38417 1 6738 6738 1.3295 0.5359 1 + 41549 23549 26235 26247 47658 47658 -0.0520832479528508 SLPHGGRKI 9 Unmodified _SLPHGGRKI_ 0 0 0 L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|30|2|sense L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|30|2|sense L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|30|2|sense MSMS UPN48_class_I_Rep_1 5 482.7860107421875 2 482.787976 963.561398 NaN NaN NaN NaN NaN NaN NaN 35.973 1 39.483 38.983 39.983 3.5101 0 0 0 0.39518 1 5952 5952 1.8442 0 1 41550 11814 26236 26248 47659 47659 0.07816002119852783 SLPILYYY 8 Unmodified _SLPILYYY_ 0 0 0 L1MB7_dup4964|chr3:171634773-171635965:-|1.5447864696543567|0.0735510956343897|4.39|151.0|80|3|anti-sense L1MB7_dup4964|chr3:171634773-171635965:-|1.5447864696543567|0.0735510956343897|4.39|151.0|80|3|anti-sense L1MB7_dup4964|chr3:171634773-171635965:-|1.5447864696543567|0.0735510956343897|4.39|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.6671752929688 2 516.276044 1030.53753 NaN NaN NaN NaN NaN NaN NaN 19.185 1 22.582 22.082 23.082 3.3963 0 0 0 0.40738 1 1761 1761 0.79363 0 1 41551 10840 26237 26249 47660 47660 0.023487238428060664 SLPITLKP 8 Unmodified _SLPITLKP_ 0 0 0 REV__HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|22|1|sense REV__HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|22|1|sense MSMS UPN48_class_I_Rep_2 6 434.7796936035156 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 61.964 1 65.438 64.938 65.938 3.4738 0 0 0 0.40643 1 13807 13807 2.0598 0 1 + 41552 23783 26238 26250 47661 47661 0.10388447425282266 SLPLLVPGG 9 Unmodified _SLPLLVPGG_ 0 0 0 MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|25|3|anti-sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|25|3|anti-sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|25|3|anti-sense MSMS UPN47_class_I_Rep_3 4 426.7642822265625 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 60.337 1 63.502 63.002 64.002 3.1651 0 0 0 0.39326 1 14162 14162 2.3027 0 1 41553 16287 26239 26251 47662 47662 0.07995874391201596 SLPLLVPGG 9 Unmodified _SLPLLVPGG_ 0 0 0 MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|25|3|anti-sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|25|3|anti-sense MLT1C_dup10555|chrX:2395900-2396341:-|1.1381752651576271|0.0227002409168994|5.65|151.0|25|3|anti-sense MSMS UPN47_class_I_Rep_3 4 426.7643737792969 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 60.463 1 63.628 63.128 64.128 3.1651 0 0 0 0.39326 1 14200 14200 2.3027 0 1 41554 16287 26239 26251 47663 47663 0.07995874391201596 SLPMCHIII 9 Unmodified _SLPMCHIII_ 0 0 0 REV__L1MA2_dup6023|chr13:21302370-21302820:-|1.985238543026528|0.3850803066110133|2.37|151.0|14|2|sense REV__L1MA2_dup6023|chr13:21302370-21302820:-|1.985238543026528|0.3850803066110133|2.37|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.7789916992188 2 513.777373 1025.54019 0.36156 0.00018576 1.4462 0.00074302 1.8077 0.00092878 513.778038470393 77.868 0.25383 81.47 81.248 81.502 3.6016 42 23 2 0 0 0 0.41259 1 18424 18424 7.2892 0 1 189930 + 41555 24912 26240 26252 47664 47664 0.028445327044664737 SLPNFWFN 8 Unmodified _SLPNFWFN_ 0 0 0 REV__ENSG00000184985|ENST00000507866|SORCS2 REV__ENSG00000184985|ENST00000507866|SORCS2 MSMS UPN47_class_I_Rep_2 3 512.7489013671875 2 512.747985 1023.48142 NaN NaN NaN NaN NaN NaN NaN 75.453 1 78.766 78.266 79.266 3.3127 0 0 0 0.4044 1 18632 18632 4.756 0 1 + 41556 20838 26241 26253 47665 47665 -0.029384842740114436 SLPNSSKHI 9 Unmodified _SLPNSSKHI_ 0 0 0 L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|24|2|sense L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|24|2|sense L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|24|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 491.2904052734375 2 491.769448 981.524344 -0.26222 -0.00012895 0.032631 1.6047E-05 -0.22959 -0.00011291 491.76950821877597 39.073 0.44537 42.738 42.545 42.99 3.6652 47 28 2 0 0 0 0.1249 1 7560 7560 0.35063 0 1 65007 41557 14211 26242 26254 47666 47666 0.03284285783422547 SLPPFLLPPY 10 Unmodified _SLPPFLLPPY_ 0 0 0 REV__ENST00000340855.10_2_X:148561772-148561919:-|nuORF REV__ENST00000340855.10_2_X:148561772-148561919:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 571.7706298828125 2 572.326068 1142.63758 0.5716 0.00032714 -3.5279 -0.0020191 -2.9563 -0.001692 572.3228327678416 60.67 0.089085 64.144 64.109 64.198 3.4737 8 6 2 0 0 0 0.84575 1 13432 13432 3.9444 0.94915 1 39775 + 41558 21819 26243 26255 47667 47667 0.0719696117660078 SLPPLAPLF 9 Unmodified _SLPPLAPLF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 477.7864685058594 2 477.786579 953.558604 0.16391 7.8314E-05 -0.02287 -1.0927E-05 0.14104 6.7387E-05 477.78641955069946 68.183 0.80904 71.635 71.216 72.025 3.4517 166 68 3 0 0 0 0.081857 2 15736 15644;15736 38.151 0 1 561570 + 41559 21833 26244 26256 47668;47669 47669 0.07996733942320589 SLPPLAPLF 9 Unmodified _SLPPLAPLF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MSMS UPN48_class_I_Rep_1 5 477.786865234375 2 477.786579 953.558604 NaN NaN NaN NaN NaN NaN NaN 68.5 1 71.951 71.451 72.451 3.4517 0 0 0 0.1074 1 15822 15822 23.148 0 1 + 41560 21833 26244 26256 47670 47670 0.07996733942320589 SLPPLAPLF 9 Unmodified _SLPPLAPLF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 477.786865234375 2 477.786579 953.558604 0.16391 7.8314E-05 -0.02287 -1.0927E-05 0.14104 6.7387E-05 477.78641955069946 68.183 0.80904 71.635 71.216 72.025 3.4517 166 68 3 0 0 0 0.086155 1 15822 15822 23.148 0 1 561570 + 41561 21833 26244 26256 47671 47671 0.07996733942320589 SLPPLAPLF 9 Unmodified _SLPPLAPLF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 477.78631591796875 2 477.786579 953.558604 0.27384 0.00013084 -0.10215 -4.8808E-05 0.17169 8.2032E-05 477.7863599123875 67.906 0.77969 71.413 70.968 71.748 3.5077 157 71 3 0 0 0 0.33654 1 15444 15444 11.64 0 1 676090 + 41562 21833 26244 26256 47672 47672 0.07996733942320589 SLPPLAPLF 9 Unmodified _SLPPLAPLF_ 0 0 0 REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF REV__ENST00000343110.2_1_1:203456044-203456392:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 477.786579 953.558604 0.27384 0.00013084 -0.10215 -4.8808E-05 0.17169 8.2032E-05 477.7863599123875 67.906 0.77969 71.413 70.968 71.748 3.5077 -0.11522 -5.1296E-05 NaN 38.151 157 71 3 NaN NaN NaN NaN 0 NaN NaN 0 676090 + 41563 21833 26244 26256 0.07996733942320589 SLPRSVKR 8 Unmodified _SLPRSVKR_ 0 0 0 REV__L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|51|3|sense REV__L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|51|3|sense MSMS UPN47_class_I_Rep_3 4 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 55.315 1 58.493 57.993 58.993 3.1779 0 0 0 0.40746 1 12631 12631 0.69038 0 1 + 41564 28691 26245 26257 47673 47673 0.10392288636899139 SLPSALRPE 9 Unmodified _SLPSALRPE_ 0 0 0 ENST00000429989.7_1_10:82277765-82278146:+|nuORF ENST00000429989.7_1_10:82277765-82278146:+|nuORF ENST00000429989.7_1_10:82277765-82278146:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 485.2715759277344 2 485.271824 968.529095 0.051787 2.5131E-05 -0.062631 -3.0393E-05 -0.010845 -5.2626E-06 485.2717651764246 31.414 0.54673 31.414 31.175 31.722 0 54 38 2 0 0 0 0.35081 1 5254 5254 10.824 0 1 74981 41565 6716 26246 26258 47674 47674 0.0435716992617472 SLPSVNPIY 9 Unmodified _SLPSVNPIY_ 0 0 0 REV__L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|75|3|anti-sense REV__L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 495.26727294921875 2 495.26875 988.522947 NaN NaN NaN NaN NaN NaN NaN 47.36 1 47.36 46.86 47.86 0 0 0 0 0.28335 1 9786 9786 11.64 0 1 + 41566 27692 26247 26259 47675 47675 0.02822651694657452 SLPVLFVVF 9 Unmodified _SLPVLFVVF_ 0 0 0 REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|82|1|anti-sense REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|82|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 511.3114013671875 2 510.810054 1019.60555 0.32109 0.00016402 -1.5132 -0.00077297 -1.1921 -0.00060895 511.3114977822723 111.59 0.069038 115.25 115.24 115.31 3.6666 6 4 2 0 0 0 0.48414 1 26557 26557 2.3027 0 1 74959 + 41567 29398 26248 26260 47676 47676 0.09653593493464996 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-SECPEP UPN47_class_I_Rep_1 2 543.7827758789062 2 544.290745 1086.56694 0.18494 0.00010066 1.6078 0.0008751 1.7927 0.00097576 544.2918755428808 46.619 0.23852 50.318 50.186 50.425 3.6999 25 17 2 0 0 0 0.11734 1 9902 9902 11.495 3.3392 1 63241 41568 1003 26249 26261 47677 47677 0.027116361209891693 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-SECPEP UPN47_class_I_Rep_2 3 543.7822265625 2 544.290745 1086.56694 0.26457 0.000144 0.91557 0.00049834 1.1801 0.00064234 544.2913792010729 47.006 0.2291 50.357 50.22 50.449 3.3515 22 15 2 0 0 0 0.11817 1 10062 10062 10.8 3.1906 1 61669 41569 1003 26249 26261 47678 47678 0.027116361209891693 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS UPN47_class_I_Rep_3 4 544.2850341796875 2 544.290745 1086.56694 0.31565 0.00017181 0.68334 0.00037194 0.99899 0.00054374 544.7927756621997 47.111 0.28493 50.355 50.151 50.435 3.2439 21 16 2 0 0 0 0.12795 1 10120 10120 28.495 11.382 1 140340 41570 1003 26249 26261 47679 47679 0.027116361209891693 SLQEAEKLY 9 Unmodified _SLQEAEKLY_ 0 0 0 nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX nc|ENSG00000162819|Q5VW32-2|BROX nc|ENSG00000162819|Q5VW32-2|BROX MULTI-MSMS UPN47_class_I_Rep_2 3 540.7816772460938 2 540.782222 1079.54989 0.01599 8.6473E-06 -0.34829 -0.00018835 -0.3323 -0.0001797 540.7819158366242 41.765 0.73272 45.13 44.88 45.613 3.3655 82 55 2 0 0 0 0.26468 1 8493 8493 16.149 0.90062 1 154540 41571 3964 26250 26262 47680 47680 0.013297155152031337 SLQEAEKLY 9 Unmodified _SLQEAEKLY_ 0 0 0 nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX nc|ENSG00000162819|Q5VW32-2|BROX nc|ENSG00000162819|Q5VW32-2|BROX MULTI-SECPEP UPN47_class_I_Rep_3 4 540.7822265625 2 540.782222 1079.54989 0.038726 2.0942E-05 -0.34669 -0.00018749 -0.30797 -0.00016654 540.7820035256827 41.972 0.59908 45.212 44.852 45.451 3.2394 89 49 2 0 0 0 0.1154 1 8494 8494 13.042 2.9685 1 109010 41572 3964 26250 26262 47681 47681 0.013297155152031337 SLQEEIAFL 9 Unmodified _SLQEEIAFL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_1 2 525.2792358398438 2 525.279315 1048.54408 0.35409 0.00018599 -0.018075 -9.4943E-06 0.33601 0.0001765 525.2792587811019 80.388 0.83926 83.853 83.67 84.509 3.465 173 97 2 0 0 0 0.011285 7 20060 20001;20032;20060;20096;20099;20134;20200 69.105 24.003 1 1600100 41573 824 26251 26263 47682;47683;47684;47685;47686;47687;47688 47684 0.02174617003538515 SLQEEIAFL 9 Unmodified _SLQEEIAFL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_2 3 525.2793579101562 2 525.279315 1048.54408 0.15279 8.0258E-05 0.26526 0.00013933 0.41805 0.00021959 525.2793829333194 80.536 0.89201 83.905 83.724 84.616 3.3694 156 115 2 0 0 0 0.006828 4 20056 20029;20056;20086;20120 72.968 28.64 1 334340 41574 824 26251 26263 47689;47690;47691;47692 47690 0.02174617003538515 SLQEEIAFL 9 Unmodified _SLQEEIAFL_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_3 4 525.2796020507812 2 525.279315 1048.54408 0.37671 0.00019788 0.19488 0.00010237 0.57159 0.00030024 525.2792770097927 80.64 1.0417 83.949 83.666 84.708 3.309 264 132 3 0 0 0 0.0070571 5 20151 20124;20151;20181;20209;20244 86.332 34.063 1 845140 41575 824 26251 26263 47693;47694;47695;47696;47697 47694 0.02174617003538515 SLQEVAMFL 9 Oxidation (M) _SLQEVAM(Oxidation (M))FL_ SLQEVAM(1)FL SLQEVAM(53)FL 0 0 1 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS UPN47_class_I_Rep_2 3 527.2679443359375 2 527.267893 1052.52123 0.1868 9.8493E-05 -0.26126 -0.00013775 -0.074464 -3.9262E-05 527.2676672090722 78.055 0.72104 81.398 81.02 81.741 3.3428 170 78 3 0 0 0 0.038999 2 19404 19374;19404 53.404 25.775 1 305120 41576 2525 26252 26264 47698;47699 47699 84 -0.0029272538561144756 SLQEVAMFL 9 Oxidation (M) _SLQEVAM(Oxidation (M))FL_ SLQEVAM(1)FL SLQEVAM(50)FL 0 0 1 nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 nc|ENSG00000126001|Q9BV73-2|CEP250 MULTI-MSMS UPN47_class_I_Rep_3 4 527.267822265625 2 527.267893 1052.52123 0.38453 0.00020275 -0.30978 -0.00016334 0.074748 3.9412E-05 527.2675745649027 78.167 0.61789 81.448 81.063 81.681 3.2816 142 64 3 0 0 0 0.048662 2 19462 19462;19500 49.554 21.925 1 377650 41577 2525 26252 26264 47700;47701 47700 84 -0.0029272538561144756 SLQFIKMFK 9 Unmodified _SLQFIKMFK_ 0 0 0 REV__ENST00000399262.6_1_10:65140151-65140238:-|nuORF REV__ENST00000399262.6_1_10:65140151-65140238:-|nuORF MSMS UPN48_class_I_Rep_1 5 571.3277587890625 2 571.325545 1140.63654 NaN NaN NaN NaN NaN NaN NaN 74.495 1 77.985 77.485 78.485 3.49 0 0 0 0.3967 1 17605 17605 1.4819 0 1 + 41578 22149 26253 26265 47702 47702 0.0718442353604587 SLQKDLLTL 9 Unmodified _SLQKDLLTL_ 0 0 0 ENST00000379391.7_2_12:57453765-57454582:-|nuORF ENST00000379391.7_2_12:57453765-57454582:-|nuORF ENST00000379391.7_2_12:57453765-57454582:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 515.81103515625 2 515.810782 1029.60701 0.38681 0.00019952 0.18864 9.7302E-05 0.57545 0.00029682 515.8107941849921 63.453 1.1353 66.927 66.514 67.65 3.4738 181 87 3 0 0 0 0.037922 1 14209 14209 53.833 0 1 2439000 41579 6476 26254 26266 47703 47703 0.09339182791563871 SLQKERKPA 9 Unmodified _SLQKERKPA_ 0 0 0 MLT1D_dup14719|chr12:104621406-104621822:+|2.994136410158141|0.0080950815648635|8.53|151.0|14|3|sense MLT1D_dup14719|chr12:104621406-104621822:+|2.994136410158141|0.0080950815648635|8.53|151.0|14|3|sense MLT1D_dup14719|chr12:104621406-104621822:+|2.994136410158141|0.0080950815648635|8.53|151.0|14|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.8128051757812 2 528.811648 1055.60874 -0.11657 -6.1645E-05 0.44798 0.0002369 0.33141 0.00017525 528.811550024509 28.242 0.42448 32.008 31.843 32.267 3.7662 43 33 2 0 0 0 0.48846 1 4315 4315 1.8442 0.36234 1 52963 41580 16335 26255 26267 47704 47704 0.08316236600194316 SLQKNKII 8 Unmodified _SLQKNKII_ 0 0 0 AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.29998779296875 2 472.300384 942.586216 0.076461 3.6113E-05 -0.051901 -2.4513E-05 0.02456 1.16E-05 472.30032405307594 48.223 0.53502 51.747 51.535 52.07 3.5239 44 34 2 0 0 0 0.82752 2 9643 9643;9654 10.824 0 1 72162 41581 97 26256 26268 47705;47706 47705 0.112626372025602 SLQKNKII 8 Unmodified _SLQKNKII_ 0 0 0 AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.3003845214844 2 472.300384 942.586216 0.11098 5.2417E-05 -0.0080603 -3.8069E-06 0.10292 4.861E-05 472.3003078082108 48.061 0.57469 51.797 51.481 52.056 3.7361 51 38 2 0 0 0 0.82752 2 9518 9518;9579 7.2892 0 1 110260 41582 97 26256 26268 47707;47708 47707 0.112626372025602 SLQKNKII 8 Unmodified _SLQKNKII_ 0 0 0 AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 472.3005065917969 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 48.131 1 51.765 51.265 52.265 3.6339 0 0 0 0.39242 1 9521 9521 10.824 0 1 41583 97 26256 26268 47709 47709 0.112626372025602 SLQKNKII 8 Unmodified _SLQKNKII_ 0 0 0 AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 472.30035400390625 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 48.289 1 51.923 51.423 52.423 3.6339 0 0 0 0.39242 1 9570 9570 10.824 0 1 41584 97 26256 26268 47710 47710 0.112626372025602 SLQKNKII 8 Unmodified _SLQKNKII_ 0 0 0 AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 472.300384 942.586216 0.076461 3.6113E-05 -0.051901 -2.4513E-05 0.02456 1.16E-05 472.30032405307594 48.223 0.53502 51.747 51.535 52.07 3.5239 -0.025329 -1.9462E-05 NaN 10.824 44 34 2 NaN NaN NaN NaN 0 NaN NaN 0 72162 41585 97 26256 26268 0.112626372025602 SLQKNKII 8 Unmodified _SLQKNKII_ 0 0 0 AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense AluJo_dup24911|chr6:75641696-75641843:+|1.3673557124299285|0.2561601414931575|2.42|151.0|5|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 472.300384 942.586216 0.11098 5.2417E-05 -0.0080603 -3.8069E-06 0.10292 4.861E-05 472.3003078082108 48.061 0.57469 51.797 51.481 52.056 3.7361 0.025329 2.195E-05 NaN 10.824 51 38 2 NaN NaN NaN NaN 0 NaN NaN 0 110260 41586 97 26256 26268 0.112626372025602 SLQKPITPV 9 Unmodified _SLQKPITPV_ 0 0 0 L1MD3_dup2018|chr7:37178703-37179165:+|1.4580477262556877|0.0055834834180529|8.03|151.0|14|3|sense L1MD3_dup2018|chr7:37178703-37179165:+|1.4580477262556877|0.0055834834180529|8.03|151.0|14|3|sense L1MD3_dup2018|chr7:37178703-37179165:+|1.4580477262556877|0.0055834834180529|8.03|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.79791259765625 2 491.800217 981.585882 0.29692 0.00014603 -0.096828 -4.762E-05 0.20009 9.8406E-05 491.8002039840416 67.509 0.6881 71.016 70.746 71.434 3.5077 103 61 3 0 0 0 0.43153 1 15349 15349 6.2058 0 1 469900 41587 12064 26257 26269 47711 47711 0.09435217482689495 SLQKTPPTR 9 Unmodified _SLQKTPPTR_ 0 0 0 ENSG00000146243|ENST00000369940|IRAK1BP1 ENSG00000146243|ENST00000369940|IRAK1BP1 ENSG00000146243|ENST00000369940|IRAK1BP1 MULTI-MSMS UPN47_class_I_Rep_2 3 514.2977905273438 2 514.298373 1026.58219 0.2288 0.00011767 -0.27255 -0.00014017 -0.043751 -2.2501E-05 514.2982101387419 87.453 0.46898 90.9 90.669 91.138 3.4471 89 58 2 0 0 0 0.47763 1 21725 21725 2.9952 1.151 1 104990 41588 3429 26258 26270 47712 47712 0.06996547708831713 SLQLHLVF 8 Unmodified _SLQLHLVF_ 0 0 0 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 MSMS UPN48_class_I_Rep_2 6 478.7816162109375 2 478.781828 955.549102 NaN NaN NaN NaN NaN NaN NaN 67.682 1 71.178 70.678 71.678 3.4964 0 0 0 0.388 1 15557 15557 12.532 0 1 41589 5053 26259 26271 47713 47713 0.06954965656814238 SLQLLSNYI 9 Unmodified _SLQLLSNYI_ 0 0 0 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS UPN47_class_I_Rep_2 3 525.794677734375 2 525.795132 1049.57571 -0.063643 -3.3463E-05 -0.10517 -5.5296E-05 -0.16881 -8.8759E-05 525.7949799359363 46.417 0.7978 49.768 49.433 50.231 3.3515 117 58 3 0 0 0 0.279 1 9972 9972 15.248 1.6336 1 155210 + 41590 19312 26260 26272 47714 47714 0.05290609757457787 SLQLLSNYI 9 Unmodified _SLQLLSNYI_ 0 0 0 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 REV__nc|ENSG00000139505|Q9Y217-2|MTMR6 MSMS UPN47_class_I_Rep_3 4 525.7945556640625 2 525.795132 1049.57571 NaN NaN NaN NaN NaN NaN NaN 46.961 1 50.205 49.705 50.705 3.2439 0 0 0 0.39036 1 10093 10093 2.9952 0 1 + 41591 19312 26260 26272 47715 47715 0.05290609757457787 SLQPHDEHY 9 Unmodified _SLQPHDEHY_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4 MULTI-MSMS UPN48_class_I_Rep_2 6 563.252197265625 2 563.25162 1124.48869 0.42871 0.00024147 -0.097331 -5.4822E-05 0.33138 0.00018665 563.2515978136191 41.911 0.53682 45.669 45.367 45.904 3.7579 89 56 2 0 0 0 0.46869 1 7663 7663 3.9444 0 1 112400 + 41592 18910 26261 26273 47716 47716 -0.06857796464237254 SLQPWVQEI 9 Unmodified _SLQPWVQEI_ 0 0 0 ENST00000554227.6_1_15:25219600-25219887:+|nuORF ENST00000554227.6_1_15:25219600-25219887:+|nuORF ENST00000554227.6_1_15:25219600-25219887:+|nuORF MSMS UPN47_class_I_Rep_2 3 550.2952270507812 2 550.292756 1098.57096 NaN NaN NaN NaN NaN NaN NaN 61.385 1 64.65 64.15 65.15 3.2654 0 0 0 0.37891 1 14426 14426 5.7319 0.50118 1 41593 7420 26262 26274 47717 47717 0.025617256147143053 SLQQWRKI 8 Unmodified _SLQQWRKI_ 0 0 0 REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense REV__Tigger1_dup10867|chr17:49322903-49324387:-|3.467480895692248|0.0495240938312205|6.13|151.0|54|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 529.2470092773438 2 529.808908 1057.60326 0.17253 9.141E-05 -1.7407 -0.00092222 -1.5681 -0.00083081 529.8079619027118 69.1 0.17496 72.376 72.312 72.487 3.2761 18 14 2 0 0 0 0.72333 1 16792 16792 6.7232 0 1 157940 + 41594 32342 26263 26275 47718 47718 0.07676557808372309 SLQRSLAR 8 Unmodified _SLQRSLAR_ 0 0 0 REV__ENSG00000106211|ENST00000248553|HSPB1 REV__ENSG00000106211|ENST00000248553|HSPB1 MSMS UPN46_class_I_Rep_3 1 465.77716064453125 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 77.685 1 77.685 77.185 78.185 0 0 0 0 0.40157 1 18169 18169 7.2892 0 1 + 41595 18319 26264 26276 47719 47719 0.07307411740168845 SLQVIYAW 8 Unmodified _SLQVIYAW_ 0 0 0 REV__ENSG00000152520.14,PAN3,chr13,+,I7.1,28240038,28256291|41|15.09|1|intron REV__ENSG00000152520.14,PAN3,chr13,+,I7.1,28240038,28256291|41|15.09|1|intron MSMS UPN48_class_I_Rep_1 5 490.27239990234375 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 29.755 1 33.305 32.805 33.805 3.5499 0 0 0 0.40738 1 4181 4181 0.79363 0 1 + 41596 19685 26265 26277 47720 47720 0.02734972902840127 SLREDQQSF 9 Unmodified _SLREDQQSF_ 0 0 0 ENSG00000086730|ENST00000460943|LAT2;nc|ENSG00000086730|Q9GZY6-2|LAT2 ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN46_class_I_Rep_3 1 555.2648315429688 2 555.264727 1108.5149 0.24992 0.00013877 -0.08497 -4.7181E-05 0.16495 9.1591E-05 555.264649223914 34.075 0.68026 34.075 33.906 34.586 0 86 49 2 0 0 0 0.10956 3 6049 6007;6049;6091 32.037 3.543 1 198740 41597 1285 26266 26278 47721;47722;47723 47722 -0.03501527292769424 SLRGKAIRAR 10 Unmodified _SLRGKAIRAR_ 0 0 0 REV__L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|129|2|sense REV__L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|129|2|sense MSMS UPN48_class_I_Rep_1 5 564.359619140625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 75.366 1 78.866 78.366 79.366 3.4996 0 0 0 0.53105 1 17851 17851 0 0 1 + 41598 30365 26267 26279 47724 47724 0.14642429230912057 SLRIGLLEV 9 Unmodified _SLRIGLLEV_ 0 0 0 REV__L1ME2_dup8120|chr10:74944834-74945460:+|1.0488126694311486|0.0033171902712029|8.3|151.0|36|2|anti-sense REV__L1ME2_dup8120|chr10:74944834-74945460:+|1.0488126694311486|0.0033171902712029|8.3|151.0|36|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.3134765625 2 500.313492 998.612431 0.2954 0.00014779 -0.26647 -0.00013332 0.028939 1.4479E-05 500.3134075256022 80.728 0.073456 80.728 80.715 80.789 0 6 5 2 0 0 0 0.38714 1 19034 19034 8.7454 0 1 703330 + 41599 27889 26268 26280 47725 47725 0.11306906374034043 SLRKNAQKLLS 11 Unmodified _SLRKNAQKLLS_ 0 0 0 nc|ENSG00000116205|Q96MN5-2|TCEANC2;ENSG00000116205|ENST00000234827|TCEANC2 nc|ENSG00000116205|Q96MN5-2|TCEANC2 nc|ENSG00000116205|Q96MN5-2|TCEANC2 MSMS UPN46_class_I_Rep_3 1 629.3837890625 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 63.558 1 63.558 63.058 64.058 0 0 0 0 0.38417 1 14275 14275 4.897 1.6157 1 41600 2170 26269 26281 47726 47726 0.1383612813417585 SLRLHRIK 8 Unmodified _SLRLHRIK_ 0 0 0 Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|108|2|anti-sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|108|2|anti-sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|108|2|anti-sense MSMS UPN47_class_I_Rep_2 3 511.73968505859375 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 20.627 1 24.035 23.535 24.535 3.4074 0 0 0 0.40738 1 2176 2176 0.79363 0 1 41601 33174 26270 26282 47727 47727 0.14092256799210645 SLRLPGKWLT 10 Unmodified _SLRLPGKWLT_ 0 0 0 REV__ENST00000416709.1_1_6:168687664-168688738:-|nuORF REV__ENST00000416709.1_1_6:168687664-168688738:-|nuORF MSMS UPN46_class_I_Rep_3 1 585.8527221679688 2 585.853316 1169.69208 NaN NaN NaN NaN NaN NaN NaN 101.77 1 101.77 101.27 102.27 0 0 0 0 0.53105 1 24830 24830 1.1933 0.12188 1 + 41602 22222 26271 26283 47728 47728 0.11401973048032232 SLRLRNAL 8 Unmodified _SLRLRNAL_ 0 0 0 REV__ENST00000577916.6_1_19:18547702-18548789:-|nuORF REV__ENST00000577916.6_1_19:18547702-18548789:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7959899902344 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 59.409 1 62.682 62.182 63.182 3.2731 0 0 0 0.40738 1 13826 13826 0.79363 0 1 + 41603 18300 26272 26284 47729 47729 0.10392288636876401 SLRNSARR 8 Unmodified _SLRNSARR_ 0 0 0 nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5 nc|ENSG00000176927|A4FU69-3|EFCAB5 nc|ENSG00000176927|A4FU69-3|EFCAB5 MSMS UPN48_class_I_Rep_2 6 480.2795715332031 2 480.278306 958.54206 NaN NaN NaN NaN NaN NaN NaN 20.811 1 24.459 23.959 24.959 3.648 0 0 0 0.40659 1 1855 1855 1.8442 0.36234 1 41604 4773 26273 26285 47730 47730 0.061130458289426315 SLRPSQVTV 9 Unmodified _SLRPSQVTV_ 0 0 0 ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815.19,WDFY4,chr10,+,I37.1,48824170,48826670|28|6.37|4|intron;ENST00000465910.5_1_10:50154093-50174894:+|nuORF ENSG00000128815|ENST00000325239|WDFY4 ENSG00000128815|ENST00000325239|WDFY4 MULTI-MSMS UPN47_class_I_Rep_2 3 493.7840881347656 2 493.785099 985.555644 0.27573 0.00013615 0.028973 1.4307E-05 0.30471 0.00015046 493.784960047103 50.215 0.56124 53.558 53.351 53.912 3.3431 51 27 3 0 0 0 0.24936 1 11030 11030 17.113 0 1 115020 41605 2602 26274 26286 47731 47731 0.06228858817519267 SLRPSSLI 8 Unmodified _SLRPSSLI_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.7635192871094 2 436.763635 871.512717 -0.029543 -1.2903E-05 0.073642 3.2164E-05 0.044098 1.9261E-05 436.76355260436776 53.972 0.69799 57.5 57.188 57.886 3.5278 72 38 2 0 0 0 0.82752 2 12124 12124;12164 39.957 0 1 193100 + 41606 30140 26275 26287 47732;47733 47732 0.071820887600893 SLRPSSLI 8 Unmodified _SLRPSSLI_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 436.76361083984375 2 436.763635 871.512717 -0.26933 -0.00011763 0.51336 0.00022422 0.24403 0.00010658 436.76362793453734 54.223 0.95215 57.541 57.218 58.171 3.3187 77 49 2 0 0 0 0.82752 1 12236 12236 37.974 0 1 175500 + 41607 30140 26275 26287 47734 47734 0.071820887600893 SLRPSSLI 8 Unmodified _SLRPSSLI_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 436.7632751464844 2 436.763635 871.512717 -0.37581 -0.00016414 0.59973 0.00026194 0.22393 9.7803E-05 436.76370628542776 54.417 0.86301 57.602 57.211 58.074 3.1856 94 52 2 0 0 0 0.82752 1 12347 12347 39.957 0 1 156940 + 41608 30140 26275 26287 47735 47735 0.071820887600893 SLRPSSLI 8 Unmodified _SLRPSSLI_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 436.763635 871.512717 -0.029543 -1.2903E-05 0.073642 3.2164E-05 0.044098 1.9261E-05 436.76355260436776 53.972 0.69799 57.5 57.188 57.886 3.5278 -0.047744 -0.00019163 NaN 39.957 72 38 2 NaN NaN NaN NaN 0 NaN NaN 0 193100 + 41609 30140 26275 26287 0.071820887600893 SLRPSSLI 8 Unmodified _SLRPSSLI_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|47|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 436.763635 871.512717 -0.26933 -0.00011763 0.51336 0.00022422 0.24403 0.00010658 436.76362793453734 54.223 0.95215 57.541 57.218 58.171 3.3187 -0.0064816 0.00019248 NaN 39.957 77 49 2 NaN NaN NaN NaN 0 NaN NaN 0 175500 + 41610 30140 26275 26287 0.071820887600893 SLRQILRHKRK 11 Unmodified _SLRQILRHKRK_ 0 0 0 ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 478.97418212890625 3 478.975788 1433.90553 0.113 5.4126E-05 -2.2129 -0.0010599 -2.0999 -0.0010058 478.9744763733466 49.926 0.2183 53.451 53.364 53.583 3.5246 18 13 2 0 0 0 0.68178 1 10149 10149 0.36667 0 1 76750 41611 7336 26276 26288 47736 47736 0.20593698547577333 SLRQILRHKRK 11 Unmodified _SLRQILRHKRK_ 0 0 0 ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 479.3099060058594 3 478.975788 1433.90553 0.33511 0.00016051 -2.1947 -0.0010512 -1.8595 -0.00089068 479.3091864125086 57.284 0.23383 60.798 60.75 60.984 3.5142 23 19 2 0 0 0 0.67462 1 12387 12387 1.0136 0.55906 1 137510 41612 7336 26276 26288 47737 47737 0.20593698547577333 SLRQRKVLVN 10 Unmodified _SLRQRKVLVN_ 0 0 0 REV__L1MEd_dup2031|chr2:23841965-23842330:-|1.0958493097166924|0.009230505795648|6.89|151.0|8|2|sense REV__L1MEd_dup2031|chr2:23841965-23842330:-|1.0958493097166924|0.009230505795648|6.89|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 404.9237365722656 3 404.922689 1211.74624 NaN NaN NaN NaN NaN NaN NaN 43.211 1 43.211 42.711 43.711 0 0 0 0 0.53105 1 8609 8609 1.3296 0.11481 1 + 41613 28559 26277 26289 47738 47738 0.14883565199602344 SLRVFIVLA 9 Unmodified _SLRVFIVLA_ 0 0 0 L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|84|2|anti-sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|84|2|anti-sense L1MB3_dup15976|chr19:34952838-34954735:+|2.432279455414199|0.2255508377302738|3.43|151.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 509.3262939453125 2 509.326402 1016.63825 0.23862 0.00012154 0.11986 6.1048E-05 0.35849 0.00018259 509.828096344077 75.61 0.47974 79.014 78.788 79.267 3.4034 57 43 2 0 0 0 0.37599 1 18678 18678 9.3831 2.0939 1 195360 41614 10364 26278 26290 47739 47739 0.13059800616304074 SLRWVRAI 8 Unmodified _SLRWVRAI_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 500.80438232421875 2 500.806168 999.597784 0.24011 0.00012025 -1.6172 -0.00080989 -1.3771 -0.00068965 500.8053658035304 54.508 0.8217 57.693 57.425 58.246 3.1856 81 46 2 0 0 0 0.82752 2 12483 12448;12483 7.9102 0 1 135120 41615 3707 26279 26291 47740;47741 47741 0.09796879016550974 SLRYVPSSGR 10 Unmodified _SLRYVPSSGR_ 0 0 0 ENST00000424556.2_1_11:1856509-1858658:+|nuORF;ENSG00000149043|ENST00000341958|SYT8 ENST00000424556.2_1_11:1856509-1858658:+|nuORF ENST00000424556.2_1_11:1856509-1858658:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 561.3079223632812 2 561.306729 1120.59891 0.51355 0.00028826 -0.56675 -0.00031812 -0.053195 -2.9859E-05 561.3063876238544 28.952 0.43006 32.583 32.321 32.751 3.6316 73 43 2 0 0 0 0.56118 1 4062 4062 2.9952 0 1 62553 41616 3525 26280 26292 47742 47742 0.04343048594796528 SLSCRRSTTGT 11 Unmodified _SLSCRRSTTGT_ 0 0 0 REV__ADGRB3|p.F1132Lfs*12|1|0.06|ENSG00000135298|chr6:69339437-69339437|T/-|frameshift_variant REV__ADGRB3|p.F1132Lfs*12|1|0.06|ENSG00000135298|chr6:69339437-69339437|T/-|frameshift_variant MSMS UPN46_class_I_Rep_3 1 584.7899169921875 2 584.790586 1167.56662 NaN NaN NaN NaN NaN NaN NaN 19.742 1 19.742 19.242 20.242 0 0 0 0 0.38417 1 1934 1934 1.0715 0.27783 1 + 41617 16906 26281 26293 47743 47743 -0.010461068705126308 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3 ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENST00000506401.6_1_17:48148218-48152910:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 498.789306640625 2 498.78985 995.565146 0.17707 8.8321E-05 -0.047837 -2.3861E-05 0.12923 6.4461E-05 498.78965210226744 62.719 0.65544 66.078 65.689 66.344 3.3595 64 42 2 0 0 0 0.41259 1 14711 14711 7.2892 0 1 91128 41618 707 26282 26294 47744 47744 0.06718627103043673 SLSFFFVTL 9 Unmodified _SLSFFFVTL_ 0 0 0 REV__L1MEf_dup4789|chr7:5336758-5337337:+|3.51119064541879|0.0122388261931849|8.16|151.0|27|2|anti-sense REV__L1MEf_dup4789|chr7:5336758-5337337:+|3.51119064541879|0.0122388261931849|8.16|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7875366210938 2 530.789318 1059.56408 NaN NaN NaN NaN NaN NaN NaN 77.415 1 80.684 80.184 81.184 3.269 0 0 0 0.31276 1 19277 19277 10.074 0 1 + 41619 28643 26283 26295 47745 47745 0.036684127341459316 SLSFGKLYAE 10 Unmodified _SLSFGKLYAE_ 0 0 0 REV__L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|5|1|sense REV__L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 557.7799682617188 2 557.792589 1113.57063 NaN NaN NaN NaN NaN NaN NaN 51.576 1 54.793 54.293 55.293 3.2163 0 0 0 0.53105 1 11490 11490 5.2969 0.39987 1 + 41620 26955 26284 26296 47746 47746 0.018383058948302278 SLSFLKDSFA 10 Unmodified _SLSFLKDSFA_ 0 0 0 L1MA9_dup11747|chr11:102358469-102359954:-|1.8929223437746716|0.1761470900204378|3.43|151.0|102|3|anti-sense L1MA9_dup11747|chr11:102358469-102359954:-|1.8929223437746716|0.1761470900204378|3.43|151.0|102|3|anti-sense L1MA9_dup11747|chr11:102358469-102359954:-|1.8929223437746716|0.1761470900204378|3.43|151.0|102|3|anti-sense MSMS UPN47_class_I_Rep_3 4 557.780517578125 2 557.792589 1113.57063 NaN NaN NaN NaN NaN NaN NaN 51.342 1 54.558 54.058 55.058 3.2163 0 0 0 0.53105 1 11418 11418 5.2969 0 1 41621 10100 26285 26297 47747 47747 0.01838305894852965 SLSFVFPHF 9 Unmodified _SLSFVFPHF_ 0 0 0 REV__L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|463|3|anti-sense REV__L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|463|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.7793579101562 2 540.779285 1079.54402 0.51625 0.00027918 0.094951 5.1347E-05 0.6112 0.00033052 540.7793424748805 51.039 0.83077 54.255 53.816 54.646 3.2163 65 41 2 0 0 0 0.48643 1 11394 11394 2.0598 0 1 122000 + 41622 25133 26286 26298 47748 47748 0.0074266179419737455 SLSGELREV 9 Unmodified _SLSGELREV_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS UPN47_class_I_Rep_1 2 495.26751708984375 2 495.266739 988.518924 -0.20869 -0.00010336 0.46059 0.00022812 0.2519 0.00012476 495.2667775230529 42.079 0.59589 45.759 45.476 46.071 3.6792 61 40 2 0 0 0 0.21414 1 8513 8513 19.362 3.2128 1 107760 41623 965 26287 26299 47749 47749 0.024205622009503713 SLSMHLSEI 9 Unmodified _SLSMHLSEI_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|228|3|anti-sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|228|3|anti-sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|228|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 508.75762939453125 2 508.757692 1015.50083 -0.08079 -4.1103E-05 -0.22442 -0.00011418 -0.30521 -0.00015528 508.7575311840555 44.233 0.94392 47.928 47.455 48.399 3.6951 111 64 2 0 0 0 0.25207 2 9116 9116;9207 16.942 0 1 147980 41624 15257 26288 26300 47750;47751 47750 -0.0062989604541598965 SLSMHLSEI 9 Unmodified _SLSMHLSEI_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|228|3|anti-sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|228|3|anti-sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|228|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 508.7579345703125 2 508.757692 1015.50083 0.021147 1.0759E-05 -0.29375 -0.00014945 -0.2726 -0.00013869 508.75748826158906 44.753 0.93631 47.997 47.48 48.417 3.2441 106 57 2 0 0 0 0.18929 4 9395 9309;9349;9395;9477 21.747 0 1 220560 41625 15257 26288 26300 47752;47753;47754;47755 47754 -0.0062989604541598965 SLSMLALYI 9 Unmodified _SLSMLALYI_ 0 0 0 L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|108|2|anti-sense L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|108|2|anti-sense L1M4c_dup521|chr3:31656248-31658128:+|1.4883830390522816|0.1566202692732067|3.25|151.0|108|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 505.783203125 2 505.783179 1009.5518 0.20394 0.00010315 -0.35273 -0.0001784 -0.14879 -7.5257E-05 505.7829026854307 73.055 0.68092 76.435 76.175 76.855 3.3799 64 46 2 0 0 0 0.40174 1 18008 18008 7.9102 0.62092 1 139300 41626 9071 26289 26301 47756 47756 0.04741052999418116 SLSPCFFYNSF 11 Unmodified _SLSPCFFYNSF_ 0 0 0 REV__L1M4_dup15901|chr14:30999347-31000000:+|1.4516896981125726|0.004819625168401|8.23|151.0|46|3|anti-sense REV__L1M4_dup15901|chr14:30999347-31000000:+|1.4516896981125726|0.004819625168401|8.23|151.0|46|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 437.86138916015625 3 437.861996 1310.56416 0.14617 6.4001E-05 -0.48976 -0.00021445 -0.34359 -0.00015045 437.8616648576357 64.682 0.24474 68.161 68.068 68.313 3.4792 22 16 2 0 0 0 0.66279 1 14622 14622 2.084 0.17759 1 109440 + 41627 24382 26290 26302 47757 47757 -0.07869955328169453 SLSPLLLPIP 10 Unmodified _SLSPLLLPIP_ 0 0 0 REV__ENST00000317594.6_1_11:117693022-117695420:-|nuORF REV__ENST00000317594.6_1_11:117693022-117695420:-|nuORF MSMS UPN48_class_I_Rep_3 7 525.3356323242188 2 525.333893 1048.65323 NaN NaN NaN NaN NaN NaN NaN 18.265 1 21.853 21.353 22.353 3.5874 0 0 0 0.53105 1 1178 1178 0.40072 0 1 + 41628 21723 26291 26303 47758 47758 0.13085247693675228 SLSPPWLGI 9 Unmodified _SLSPPWLGI_ 0 0 0 L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|280|2|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|280|2|anti-sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|280|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 485.3080749511719 2 485.273835 968.533118 0.15022 7.2899E-05 -4.1076 -0.0019933 -3.9574 -0.0019204 485.27221227105497 48.235 0.19246 51.971 51.82 52.013 3.7361 16 12 2 0 0 0 0.070541 1 9613 9613 28.487 3.0875 1 63618 41629 15005 26292 26304 47759 47759 0.04759259419893169 SLSSDSLEIL 10 Unmodified _SLSSDSLEIL_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MSMS UPN48_class_I_Rep_1 5 532.282470703125 2 532.279512 1062.54447 NaN NaN NaN NaN NaN NaN NaN 46.627 1 50.146 49.646 50.646 3.5192 0 0 0 0.53105 1 9125 9125 18.146 0 1 + 41630 18023 26293 26305 47760 47760 0.015699919327289535 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 ENST00000550859.5_1_12:56575573-56583167:-|nuORF;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENST00000550859.5_1_12:56575573-56583167:-|nuORF ENST00000550859.5_1_12:56575573-56583167:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 473.2841796875 2 473.2844 944.554247 0.12665 5.9943E-05 -0.27363 -0.0001295 -0.14697 -6.9561E-05 473.2841825897611 76.927 0.76398 80.342 79.974 80.738 3.4149 174 68 3 0 0 0 0.0063213 6 19045 18971;19009;19045;19082;19120;19158 89.401 17.478 1 744580 41631 3144 26294 26306 47761;47762;47763;47764;47765;47766 47763 0.07975224728750163 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 ENST00000550859.5_1_12:56575573-56583167:-|nuORF;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENST00000550859.5_1_12:56575573-56583167:-|nuORF ENST00000550859.5_1_12:56575573-56583167:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 473.28424072265625 2 473.2844 944.554247 0.12809 6.0621E-05 -0.25371 -0.00012007 -0.12562 -5.9454E-05 473.2841730174515 77.033 0.91872 80.365 79.993 80.911 3.3315 234 94 3 0 0 0 0.0070866 6 19076 19041;19076;19113;19149;19185;19222 71.922 3.884 1 761290 41632 3144 26294 26306 47767;47768;47769;47770;47771;47772 47768 0.07975224728750163 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 ENST00000550859.5_1_12:56575573-56583167:-|nuORF;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENST00000550859.5_1_12:56575573-56583167:-|nuORF ENST00000550859.5_1_12:56575573-56583167:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 473.2841491699219 2 473.2844 944.554247 0.030367 1.4372E-05 -0.063761 -3.0177E-05 -0.033394 -1.5805E-05 473.28426485509493 77.058 0.82748 80.327 80.002 80.829 3.269 216 89 3 0 0 0 0.0060693 6 19236 19138;19170;19203;19236;19274;19311 89.401 17.478 1 614400 41633 3144 26294 26306 47773;47774;47775;47776;47777;47778 47776 0.07975224728750163 SLSSTPPISL 10 Unmodified _SLSSTPPISL_ 0 0 0 ENST00000360472.8_1_1:160183509-160183656:+|nuORF ENST00000360472.8_1_1:160183509-160183656:+|nuORF ENST00000360472.8_1_1:160183509-160183656:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 500.77667236328125 2 501.279315 1000.54408 0.21074 0.00010564 0.078468 3.9334E-05 0.28921 0.00014497 501.27931645201517 73.892 0.31395 77.197 76.975 77.289 3.3048 28 17 2 0 0 0 0.56033 1 18167 18167 3.5965 0 1 95829 41634 6319 26295 26307 47779 47779 0.04382617003534506 SLSSTPPISL 10 Unmodified _SLSSTPPISL_ 0 0 0 ENST00000360472.8_1_1:160183509-160183656:+|nuORF ENST00000360472.8_1_1:160183509-160183656:+|nuORF ENST00000360472.8_1_1:160183509-160183656:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 501.279315 1000.54408 0.18366 9.2066E-05 -0.11463 -5.7462E-05 0.069032 3.4604E-05 501.2793092310465 73.872 0.40918 77.258 76.993 77.402 3.3861 0.012679 -5.0186E-05 NaN 3.5965 53 41 2 NaN NaN NaN NaN 0 NaN NaN 0 106420 41635 6319 26295 26307 0.04382617003534506 SLSSTPPISL 10 Unmodified _SLSSTPPISL_ 0 0 0 ENST00000360472.8_1_1:160183509-160183656:+|nuORF ENST00000360472.8_1_1:160183509-160183656:+|nuORF ENST00000360472.8_1_1:160183509-160183656:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.279315 1000.54408 0.24765 0.00012414 -0.075248 -3.772E-05 0.17241 8.6423E-05 501.27922690220885 74.046 0.63627 77.282 77.042 77.678 3.2363 0.036363 -1.0702E-05 NaN 3.5965 87 69 2 NaN NaN NaN NaN 0 NaN NaN 0 100200 41636 6319 26295 26307 0.04382617003534506 SLSTKPQSL 9 Unmodified _SLSTKPQSL_ 0 0 0 REV__L1PA5_dup2513|chr4:17644246-17646742:+|1.2342509023832755|0.4465442800062927|1.47|151.0|34|2|sense REV__L1PA5_dup2513|chr4:17644246-17646742:+|1.2342509023832755|0.4465442800062927|1.47|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 480.7713317871094 2 480.771657 959.528761 NaN NaN NaN NaN NaN NaN NaN 35.07 1 35.07 34.57 35.57 0 0 0 0 0.38478 1 6341 6341 4.3292 0 1 + 41637 29482 26296 26308 47780 47780 0.04737750206322744 SLSTLPLQY 9 Unmodified _SLSTLPLQY_ 0 0 0 ENSG00000175449|ENST00000380005|RFESD ENSG00000175449|ENST00000380005|RFESD ENSG00000175449|ENST00000380005|RFESD MSMS UPN48_class_I_Rep_1 5 511.2829284667969 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 35.513 1 39.023 38.523 39.523 3.5101 0 0 0 0.37476 1 5817 5817 6.7232 1.4925 1 41638 4723 26297 26309 47781 47781 0.03970920866140659 SLSTVCLSGL 10 Unmodified _SLSTVCLSGL_ 0 0 0 REV__MLT1G1-int_dup251|chr14:102644492-102645329:-|2.530982933844549|0.0099178088916289|8.0|151.0|48|3|anti-sense REV__MLT1G1-int_dup251|chr14:102644492-102645329:-|2.530982933844549|0.0099178088916289|8.0|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.2763671875 2 490.260068 978.505582 NaN NaN NaN NaN NaN NaN NaN 62.694 1 65.864 65.364 66.364 3.1698 0 0 0 0.53105 1 14882 14882 18.146 2.2992 1 + 41639 31728 26298 26310 47782 47782 0.015469880973569161 SLSVGLVELI 10 Unmodified _SLSVGLVELI_ 0 0 0 REV__HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|130|3|anti-sense REV__HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|130|3|anti-sense MSMS UPN47_class_I_Rep_1 2 515.31298828125 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 63.212 1 66.571 66.071 67.071 3.3595 0 0 0 0.53105 1 14942 14942 29.082 0 1 + 41640 23729 26299 26311 47783 47783 0.098600669343341 SLSVGLVELI 10 Unmodified _SLSVGLVELI_ 0 0 0 REV__HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|130|3|anti-sense REV__HERVIP10B3-int_dup220|chr20:41595017-41597276:+|1.5208230256978457|0.0411249881770856|5.21|151.0|130|3|anti-sense MSMS UPN47_class_I_Rep_3 4 515.229736328125 2 515.313158 1028.61176 NaN NaN NaN NaN NaN NaN NaN 64.12 1 67.294 66.794 67.794 3.1741 0 0 0 0.53105 1 15313 15313 5.7319 0 1 + 41641 23729 26299 26311 47784 47784 0.098600669343341 SLSWVEYIM 9 Unmodified _SLSWVEYIM_ 0 0 0 REV__HAL1_dup13340|chrX:20199399-20200114:+|1.6147689536677805|0.0214597136110299|6.23|151.0|56|3|anti-sense REV__HAL1_dup13340|chrX:20199399-20200114:+|1.6147689536677805|0.0214597136110299|6.23|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_1 2 564.27392578125 2 564.275718 1126.53688 NaN NaN NaN NaN NaN NaN NaN 22.992 1 26.697 26.197 27.197 3.7042 0 0 0 0.39518 1 2770 2770 1.8442 0.19162 1 + 41642 23349 26300 26312 47785 47785 -0.021324388685798112 SLTCRAWPF 9 Unmodified _SLTCRAWPF_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|5|1|sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 540.7825317382812 2 540.768394 1079.52224 NaN NaN NaN NaN NaN NaN NaN 41.62 1 44.985 44.485 45.485 3.3655 0 0 0 0.28335 1 8404 8404 11.64 2.2929 1 + 41643 29232 26301 26313 47786 47786 -0.014344662260555197 SLTCRVVAE 9 Unmodified _SLTCRVVAE_ 0 0 0 REV__nc|ENSG00000144028|O75643-2|SNRNP200 REV__nc|ENSG00000144028|O75643-2|SNRNP200 MULTI-SECPEP UPN46_class_I_Rep_3 1 488.7227478027344 2 489.257859 976.501166 0.218 0.00010666 0.49647 0.0002429 0.71448 0.00034956 489.2581248712269 53.901 0.46638 53.901 53.649 54.115 0 65 49 2 0 0 0 0.11598 1 11586 11586 11.64 2.2929 1 206950 + 41644 19472 26302 26314 47787 47787 0.01197523674443346 SLTDLCIII 9 Unmodified _SLTDLCIII_ 0 0 0 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 MULTI-MSMS UPN47_class_I_Rep_1 2 495.780517578125 2 495.780636 989.546719 0.20414 0.00010121 -0.021108 -1.0465E-05 0.18303 9.0744E-05 495.78046673167046 81.795 0.65485 85.307 85.005 85.66 3.5122 138 74 2 0 0 0 0.17468 1 20373 20373 23.148 0 1 465410 41645 3934 26303 26315 47788 47788 0.051527491368233314 SLTDLCIII 9 Unmodified _SLTDLCIII_ 0 0 0 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 MULTI-MSMS UPN47_class_I_Rep_2 3 495.7793273925781 2 495.780636 989.546719 0.35112 0.00017408 -0.37085 -0.00018386 -0.019737 -9.7852E-06 495.78025333794346 83.907 0.64317 87.319 87.072 87.715 3.4116 110 81 2 0 0 0 0.25207 1 20999 20999 16.942 0 1 152550 41646 3934 26303 26315 47789 47789 0.051527491368233314 SLTDLCIII 9 Unmodified _SLTDLCIII_ 0 0 0 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 MULTI-MSMS UPN47_class_I_Rep_3 4 495.77978515625 2 495.780636 989.546719 0.25428 0.00012607 -0.30021 -0.00014884 -0.045929 -2.2771E-05 495.78035447987537 83.985 1.1067 87.335 86.749 87.856 3.35 206 131 2 0 0 0 0.25207 3 20938 20938;21073;21165 16.942 16.942 1 190070 41647 3934 26303 26315 47790;47791;47792 47790 0.051527491368233314 SLTGRLDEV 9 Unmodified _SLTGRLDEV_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-3|STAT6;nc|ENSG00000166888|P42226-2|STAT6 ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS UPN47_class_I_Rep_3 4 495.2665100097656 2 495.266739 988.518924 -0.13195 -6.535E-05 0.65318 0.0003235 0.52123 0.00025815 495.2667000785041 42.609 0.63489 45.848 45.603 46.237 3.2394 61 41 2 0 0 0 0.17897 1 8757 8757 22.736 1.1993 1 83269 41648 4272 26304 26316 47793 47793 0.024205622009503713 SLTHATIKI 9 Unmodified _SLTHATIKI_ 0 0 0 REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|41|2|sense REV__L1PBa_dup1912|chr16:17123274-17125155:-|2.354290837991325|0.1788664431367627|3.72|151.0|41|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 492.29803466796875 2 492.297842 982.581131 0.17596 8.6625E-05 -0.84351 -0.00041526 -0.66755 -0.00032863 492.297890773897 42.484 0.52006 45.991 45.783 46.303 3.5079 65 44 2 0 0 0 0.47197 1 7906 7906 3.5965 0 1 88997 + 41649 30639 26305 26317 47794 47794 0.08914333339930636 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 608.9080810546875 2 608.405381 1214.79621 0.50998 0.00031028 0.37841 0.00023023 0.88839 0.0005405 608.4054960211039 108.03 0.69513 111.57 111.36 112.05 3.5382 113 74 2 0 0 0 0.61292 2 26501 26465;26501 4.897 2.1618 1 4351700 41650 10718 26306 26318 47795;47796 47796 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 608.4058837890625 2 608.405381 1214.79621 0.41892 0.00025487 0.19348 0.00011771 0.61239 0.00037258 608.4053464304287 108.09 0.82867 111.73 111.29 112.12 3.6313 103 73 3 0 0 0 0.59712 2 26100 26100;26158 5.2969 5.2969 1 3028600 41651 10718 26306 26318 47797;47798 47797 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 608.40576171875 2 608.405381 1214.79621 0.41892 0.00025487 0.19348 0.00011771 0.61239 0.00037258 608.4053464304287 108.09 0.82867 111.73 111.29 112.12 3.6313 103 73 3 0 0 0 22.551 1 26222 26222 5.2969 5.2969 1 3028600 41652 10718 26306 26318 47799 47799 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 608.4057006835938 2 608.405381 1214.79621 0.48893 0.00029747 0.53574 0.00032595 1.0247 0.00062341 608.4055067990332 108.23 0.41231 111.91 111.72 112.13 3.6746 107 46 3 0 0 0 0.59712 2 25589 25589;25678 5.2969 1.3525 1 5548500 41653 10718 26306 26318 47800;47801 47800 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 608.8795166015625 2 608.405381 1214.79621 NaN NaN NaN NaN NaN NaN NaN 107.8 1 111.47 110.97 111.97 3.6783 0 0 0 0.38417 1 25505 25505 5.2969 2.3016 1 41654 10718 26306 26318 47802 47802 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 608.405517578125 2 608.405381 1214.79621 0.4889 0.00029745 0.24258 0.00014759 0.73148 0.00044503 608.4052366319647 108.02 0.11688 111.7 111.59 111.71 3.6746 27 10 3 0 0 0 22.551 1 25553 25553 5.2969 1.3525 1 5933800 41655 10718 26306 26318 47803 47803 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 608.3766479492188 2 608.405381 1214.79621 0.55633 0.00033847 0.41316 0.00025137 0.96949 0.00058984 608.4055530875048 107.91 0.1852 111.59 111.47 111.66 3.6813 44 18 3 0 0 0 22.551 1 25449 25449 5.2969 1.3525 1 5124400 41656 10718 26306 26318 47804 47804 0.19740255084866476 SLTITKAILKK 11 Unmodified _SLTITKAILKK_ 0 0 0 L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense L1MB7_dup1528|chr1:224130728-224131970:+|1.1431215907150611|0.099546374883705|3.52|151.0|38|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 608.405381 1214.79621 0.53183 0.00032357 0.24327 0.00014801 0.7751 0.00047158 608.4053453719342 108.24 0.68335 111.87 111.45 112.13 3.6355 0.19505 -5.3436E-05 NaN 5.2969 133 57 3 NaN NaN NaN NaN 0 NaN NaN 0 3801200 41657 10718 26306 26318 0.19740255084866476 SLTLFLHIY 9 Unmodified _SLTLFLHIY_ 0 0 0 MLT1F2_dup3195|chr9:112316151-112316641:+|1.171105696675448|0.0039633586930294|8.21|151.0|19|3|sense MLT1F2_dup3195|chr9:112316151-112316641:+|1.171105696675448|0.0039633586930294|8.21|151.0|19|3|sense MLT1F2_dup3195|chr9:112316151-112316641:+|1.171105696675448|0.0039633586930294|8.21|151.0|19|3|sense MSMS UPN47_class_I_Rep_3 4 553.804443359375 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 58.233 1 61.399 60.899 61.899 3.1658 0 0 0 0.35339 1 13516 13516 7.9102 0 1 41658 16395 26307 26319 47805 47805 0.06859790516796238 SLTLLTLSVIR 11 Unmodified _SLTLLTLSVIR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|61|3|anti-sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_1 5 608.40576171875 2 608.387188 1214.75982 NaN NaN NaN NaN NaN NaN NaN 108.39 1 112.03 111.53 112.53 3.6313 0 0 0 0.38417 1 26222 26222 5.7319 2.1354 1 + 41659 17251 26308 26320 47806 47806 0.16103378188176976 SLTLPALSL 9 Unmodified _SLTLPALSL_ 0 0 0 ENSG00000031081|ENST00000264245|ARHGAP31 ENSG00000031081|ENST00000264245|ARHGAP31 ENSG00000031081|ENST00000264245|ARHGAP31 MSMS UPN46_class_I_Rep_3 1 457.780029296875 2 457.781493 913.548434 NaN NaN NaN NaN NaN NaN NaN 84.774 1 84.774 84.274 85.274 0 0 0 0 0.38639 1 20189 20189 3.9444 0 1 41660 836 26309 26321 47807 47807 0.08820126217085544 SLTLVTVPL 9 Unmodified _SLTLVTVPL_ 0 0 0 ENST00000327367.8_1_15:67483135-67483486:+|nuORF ENST00000327367.8_1_15:67483135-67483486:+|nuORF ENST00000327367.8_1_15:67483135-67483486:+|nuORF MSMS UPN47_class_I_Rep_2 3 471.79559326171875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 33.679 1 37.119 36.619 37.619 3.4398 0 0 0 0.38478 1 5997 5997 4.3292 0 1 41661 6175 26310 26322 47808 47808 0.10660699251184269 SLTNGDLKSK 10 Unmodified _SLTNGDLKSK_ 0 0 0 ENST00000585058.1_1_17:29850640-29851216:+|nuORF;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4 ENST00000585058.1_1_17:29850640-29851216:+|nuORF ENST00000585058.1_1_17:29850640-29851216:+|nuORF MSMS UPN48_class_I_Rep_1 5 531.7924194335938 2 531.793121 1061.57169 NaN NaN NaN NaN NaN NaN NaN 46.041 1 49.557 49.057 50.057 3.5166 0 0 0 0.53105 1 8946 8946 5.2969 0.54088 1 41662 2704 26311 26323 47809 47809 0.043365202637687617 SLTPGKTK 8 Unmodified _SLTPGKTK_ 0 0 0 HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 416.25054931640625 2 416.25036 830.486168 0.098891 4.1163E-05 -0.21575 -8.9805E-05 -0.11686 -4.8641E-05 416.2501037247617 107.46 0.13904 111.14 111.03 111.17 3.6724 28 17 2 0 0 0 0.82752 1 26334 26334 2.5775 0 1 1540500 41663 7916 26312 26324 47810 47810 0.06414399868742748 SLTPGKTK 8 Unmodified _SLTPGKTK_ 0 0 0 HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 416.25036 830.486168 0.082139 3.419E-05 1.3942 0.00058033 1.4763 0.00061452 416.25085230719606 107.49 0.089561 111.17 111.08 111.17 3.6783 0.013503 0.00029756 NaN 2.5775 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2000900 41664 7916 26312 26324 0.06414399868742748 SLTPGKTK 8 Unmodified _SLTPGKTK_ 0 0 0 HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|34|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 416.25036 830.486168 0.098553 4.1023E-05 0.59135 0.00024615 0.6899 0.00028717 416.2502189881404 107.48 0.080368 111.16 111.09 111.17 3.6813 0.0056631 -0.00037081 NaN 2.5775 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1255700 41665 7916 26312 26324 0.06414399868742748 SLTQKLGMII 10 Unmodified _SLTQKLGMII_ 0 0 0 REV__ENST00000532094.5_1_11:420655-431830:-|nuORF REV__ENST00000532094.5_1_11:420655-431830:-|nuORF MSMS UPN48_class_I_Rep_2 6 552.3267822265625 2 552.328285 1102.64202 NaN NaN NaN NaN NaN NaN NaN 70.544 1 74.08 73.58 74.58 3.5359 0 0 0 0.53105 1 16415 16415 10.8 1.4164 1 + 41666 22861 26313 26325 47811 47811 0.09480102327893292 SLTRLPGLL 9 Unmodified _SLTRLPGLL_ 0 0 0 REV__ENST00000405140.7_2_8:27468732-27468852:-|nuORF REV__ENST00000405140.7_2_8:27468732-27468852:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 485.3079833984375 2 485.30821 968.601866 0.14129 6.857E-05 -0.08486 -4.1183E-05 0.056431 2.7387E-05 485.3080606755157 48.616 0.96106 52.245 51.867 52.828 3.6291 188 74 3 0 0 0 0.090251 1 9617 9617 36.127 0 1 1587600 + 41667 22170 26314 26326 47812 47812 0.11630923719621933 SLTSIPAKAI 10 Unmodified _SLTSIPAKAI_ 0 0 0 REV__LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|8|1|sense REV__LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.78741455078125 2 500.8055 999.596446 0.24011 0.00012025 -0.28193 -0.00014119 -0.041823 -2.0945E-05 500.8053658035304 54.508 0.8217 57.693 57.425 58.246 3.1856 81 46 2 0 0 0 0.41718 1 12351 12351 18.146 0 1 135120 + 41668 30807 26315 26327 47813 47813 0.09663200137117656 SLTVSGGSSLL 11 Unmodified _SLTVSGGSSLL_ 0 0 0 REV__ENSG00000145002|ENST00000262365|FAM86B2 REV__ENSG00000145002|ENST00000262365|FAM86B2 MULTI-MSMS UPN47_class_I_Rep_2 3 511.2728576660156 2 510.782222 1019.54989 0.20319 0.00010378 -2.2182 -0.001133 -2.015 -0.0010293 511.2827127374312 53.499 0.30842 56.825 56.652 56.96 3.3266 32 21 2 0 0 0 0.57992 1 12020 12020 5.7319 1.7875 1 50415 + 41669 19501 26316 26328 47814 47814 0.04089715515226544 SLTYTVKLTLI 11 Unmodified _SLTYTVKLTLI_ 0 0 0 REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|65|2|sense REV__HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|65|2|sense MSMS UPN48_class_I_Rep_1 5 626.3821411132812 2 626.381571 1250.74859 NaN NaN NaN NaN NaN NaN NaN 99.329 1 102.94 102.44 103.44 3.6065 0 0 0 0.38417 1 23981 23981 2.7352 0.89096 1 + 41670 23571 26317 26329 47815 47815 0.13324556094039508 SLVAISWH 8 Unmodified _SLVAISWH_ 0 0 0 REV__MLT1H-int_dup325|chr6:144172601-144173938:-|1.2586432958050189|0.0127636971101861|6.62|149.0|52|1|anti-sense REV__MLT1H-int_dup325|chr6:144172601-144173938:-|1.2586432958050189|0.0127636971101861|6.62|149.0|52|1|anti-sense MSMS UPN47_class_I_Rep_1 2 456.7483215332031 2 456.750527 911.486502 NaN NaN NaN NaN NaN NaN NaN 30.578 1 34.323 33.823 34.823 3.7449 0 0 0 0.40604 1 5016 5016 2.5775 0 1 + 41671 31752 26318 26330 47816 47816 0.02721819588600738 SLVALIHMVK 10 Unmodified _SLVALIHMVK_ 0 0 0 ENST00000494880.5_1_1:185269193-185269247:-|nuORF ENST00000494880.5_1_1:185269193-185269247:-|nuORF ENST00000494880.5_1_1:185269193-185269247:-|nuORF MSMS UPN48_class_I_Rep_3 7 555.8377075195312 2 555.83882 1109.66309 NaN NaN NaN NaN NaN NaN NaN 107.38 1 111.06 110.56 111.56 3.6813 0 0 0 0.53105 1 25322 25322 3.5965 0 1 41672 7088 26319 26331 47817 47817 0.11264112427397777 SLVALPGPV 9 Unmodified _SLVALPGPV_ 0 0 0 nc|ENSG00000170909|Q8IYS5-2|OSCAR;ENSG00000170909|ENST00000358375|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR;nc|ENSG00000170909|Q8IYS5|OSCAR;nc|ENSG00000170909|Q8IYS5-7|OSCAR;nc|ENSG00000170909|Q8IYS5-6|OSCAR;nc|ENSG00000170909|Q8IYS5-4|OSCAR nc|ENSG00000170909|Q8IYS5-2|OSCAR nc|ENSG00000170909|Q8IYS5-2|OSCAR MSMS UPN47_class_I_Rep_1 2 426.76434326171875 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 59.905 1 63.303 62.803 63.803 3.3982 0 0 0 0.39326 1 13945 13945 2.3027 0 1 41673 4497 26320 26332 47818 47818 0.07995874391190227 SLVAPTRR 8 Unmodified _SLVAPTRR_ 0 0 0 REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.2745361328125 2 450.274701 898.534849 -0.2022 -9.1044E-05 -0.13349 -6.0109E-05 -0.33569 -0.00015115 450.27459681165465 84.185 1.1377 87.546 87.086 88.224 3.3615 455 142 5 0 0 0 0.82752 1 21121 21121 8.5933 0 1 6870200 + 41674 22632 26321 26333 47819 47819 0.08152313228504227 SLVAPYWFK 9 Unmodified _SLVAPYWFK_ 0 0 0 REV__L1M5_dup4477|chr2:20272353-20272893:-|3.4568934860863942|0.2573440904243845|3.75|151.0|41|3|anti-sense REV__L1M5_dup4477|chr2:20272353-20272893:-|3.4568934860863942|0.2573440904243845|3.75|151.0|41|3|anti-sense MSMS UPN46_class_I_Rep_3 1 555.8016357421875 2 555.80276 1109.59097 NaN NaN NaN NaN NaN NaN NaN 44.314 1 44.314 43.814 44.814 0 0 0 0 0.38639 1 8920 8920 3.9444 0.3479 1 + 41675 24679 26322 26334 47820 47820 0.04055521345298985 SLVARVWTLPP 11 Unmodified _SLVARVWTLPP_ 0 0 0 ENST00000311956.8_1_11:46700251-46700590:-|nuORF ENST00000311956.8_1_11:46700251-46700590:-|nuORF ENST00000311956.8_1_11:46700251-46700590:-|nuORF MSMS UPN46_class_I_Rep_3 1 619.8693237304688 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 90.592 1 90.592 90.092 91.092 0 0 0 0 0.26612 1 21850 21850 14.405 1.3629 1 41676 6110 26323 26335 47821 47821 0.10894242219501393 SLVASGVNGFL 11 Unmodified _SLVASGVNGFL_ 0 0 0 HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|324|3|anti-sense HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|324|3|anti-sense HERVK-int_dup137|chr9:128851239-128856449:+|2.513809069968552|0.2328259178421389|3.43|151.0|324|3|anti-sense MSMS UPN48_class_I_Rep_1 5 532.2919921875 2 532.292756 1062.57096 NaN NaN NaN NaN NaN NaN NaN 42.044 1 45.552 45.052 46.052 3.5079 0 0 0 0.38417 1 7733 7733 1.1933 0 1 41677 8249 26324 26336 47822 47822 0.04217725614716983 SLVDEVKQRG 10 Unmodified _SLVDEVKQRG_ 0 0 0 nc|ENSG00000126467|Q9UJT2-2|TSKS;ENSG00000126467|ENST00000246801|TSKS nc|ENSG00000126467|Q9UJT2-2|TSKS nc|ENSG00000126467|Q9UJT2-2|TSKS MSMS UPN48_class_I_Rep_3 7 566.2522583007812 2 565.811845 1129.60914 NaN NaN NaN NaN NaN NaN NaN 35.241 1 38.913 38.413 39.413 3.6721 0 0 0 0.53105 1 5689 5689 5.2969 0 1 41678 2539 26325 26337 47823 47823 0.04951611529349975 SLVDLWAEAS 10 Unmodified _SLVDLWAEAS_ 0 0 0 MLT1F2_dup4857|chr15:30839834-30840242:-|1.739628762787114|0.0048026590066202|8.5|150.0|23|3|anti-sense MLT1F2_dup4857|chr15:30839834-30840242:-|1.739628762787114|0.0048026590066202|8.5|150.0|23|3|anti-sense MLT1F2_dup4857|chr15:30839834-30840242:-|1.739628762787114|0.0048026590066202|8.5|150.0|23|3|anti-sense MSMS UPN48_class_I_Rep_2 6 545.7723388671875 2 545.774396 1089.53424 NaN NaN NaN NaN NaN NaN NaN 50.122 1 53.817 53.317 54.317 3.6946 0 0 0 0.53105 1 10200 10200 6.2058 0.44535 1 41679 16399 26326 26338 47824 47824 -0.006945710018953832 SLVDWEVFP 9 Unmodified _SLVDWEVFP_ 0 0 0 REV__L1PB1_dup11044|chr14:58378959-58380639:-|1.1525040553464632|0.0508248369734753|4.5|151.0|71|1|anti-sense REV__L1PB1_dup11044|chr14:58378959-58380639:-|1.1525040553464632|0.0508248369734753|4.5|151.0|71|1|anti-sense MSMS UPN48_class_I_Rep_2 6 546.27392578125 2 546.274032 1090.53351 NaN NaN NaN NaN NaN NaN NaN 50.231 1 53.926 53.426 54.426 3.6946 0 0 0 0.28335 1 10234 10234 11.64 0.81637 1 + 41680 30306 26327 26339 47825 47825 -0.008133656509016873 SLVELHRND 9 Unmodified _SLVELHRND_ 0 0 0 REV__ENST00000593795.5_1_19:19101856-19104449:-|nuORF REV__ENST00000593795.5_1_19:19101856-19104449:-|nuORF MSMS UPN47_class_I_Rep_2 3 541.7822875976562 2 541.783087 1081.55162 NaN NaN NaN NaN NaN NaN NaN 29.538 1 33.03 32.53 33.53 3.4923 0 0 0 0.39428 1 4745 4745 2.0598 0 1 + 41681 23186 26328 26340 47826 47826 0.014107693237974672 SLVGGEASAI 10 Unmodified _SLVGGEASAI_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.24267578125 2 452.242732 902.470912 -0.035673 -1.6133E-05 -0.71369 -0.00032276 -0.74937 -0.0003389 452.2423561035563 51.581 0.44455 55.174 55.013 55.458 3.5932 32 22 2 0 0 0 0.54822 1 11447 11447 5.7319 0 1 50356 41682 14726 26329 26341 47827 47827 0.015774882808955226 SLVGGEASAI 10 Unmodified _SLVGGEASAI_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.24249267578125 2 452.242732 902.470912 -0.065669 -2.9698E-05 -0.49256 -0.00022276 -0.55823 -0.00025245 452.24236144951135 51.793 0.41481 55.126 54.909 55.323 3.3332 31 20 2 0 0 0 0.54822 2 11501 11501;11548 5.7319 0 1 69105 41683 14726 26329 26341 47828;47829 47828 0.015774882808955226 SLVGGEASAI 10 Unmodified _SLVGGEASAI_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 452.2422790527344 2 452.242732 902.470912 -0.13637 -6.1674E-05 -0.42297 -0.00019129 -0.55935 -0.00025296 452.2424941607152 51.942 0.39458 55.148 54.983 55.377 3.2055 27 21 2 0 0 0 0.52083 1 11588 11588 9.3831 0 1 46106 41684 14726 26329 26341 47830 47830 0.015774882808955226 SLVGGEASAI 10 Unmodified _SLVGGEASAI_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 452.242732 902.470912 -0.035673 -1.6133E-05 -0.71369 -0.00032276 -0.74937 -0.0003389 452.2423561035563 51.581 0.44455 55.174 55.013 55.458 3.5932 0.024999 -0.0001271 NaN 9.3831 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 50356 41685 14726 26329 26341 0.015774882808955226 SLVGGEASAI 10 Unmodified _SLVGGEASAI_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 452.242732 902.470912 -0.065669 -2.9698E-05 -0.49256 -0.00022276 -0.55823 -0.00025245 452.24236144951135 51.793 0.41481 55.126 54.909 55.323 3.3332 -0.023428 7.2911E-05 NaN 9.3831 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 69105 41686 14726 26329 26341 0.015774882808955226 SLVGGEASAI 10 Unmodified _SLVGGEASAI_ 0 0 0 L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense L1PA7_dup1145|chr2:63926517-63932665:+|3.2016796167448938|0.2057179678320025|3.96|151.0|73|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 452.242732 902.470912 -0.13637 -6.1674E-05 -0.42297 -0.00019129 -0.55935 -0.00025296 452.2424941607152 51.942 0.39458 55.148 54.983 55.377 3.2055 -0.0015711 0.00013585 NaN 9.3831 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 46106 41687 14726 26329 26341 0.015774882808955226 SLVHVKGANAG 11 Unmodified _SLVHVKGANAG_ 0 0 0 ENST00000566359.1_1_16:66969484-66972145:+|nuORF;nc|ENSG00000172831|O00748-2|CES2;ENST00000568470.5_1_16:66969809-66977925:+|nuORF;ENSG00000172831|ENST00000317091|CES2;nc|ENSG00000172831|O00748-5|CES2;nc|ENSG00000172831|O00748-4|CES2 ENST00000566359.1_1_16:66969484-66972145:+|nuORF ENST00000566359.1_1_16:66969484-66972145:+|nuORF MSMS UPN48_class_I_Rep_1 5 526.77734375 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 20.526 1 24.071 23.571 24.571 3.5454 0 0 0 0.38417 1 1744 1744 1.1933 0.39971 1 41688 4593 26330 26342 47831 47831 0.05371663566097595 SLVIFAKM 8 Unmodified _SLVIFAKM_ 0 0 0 REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|131|1|anti-sense REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|131|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 454.3371887207031 2 454.767332 907.52011 -0.29235 -0.00013295 -1.1201 -0.0005094 -1.4125 -0.00064235 454.76762579190375 58.737 0.068539 61.903 61.873 61.942 3.1658 4 2 2 0 0 0 0.72333 1 13676 13676 2.5775 0 1 14143 + 41689 25145 26331 26343 47832 47832 0.06265105036152363 SLVIFIKS 8 Unmodified _SLVIFIKS_ 0 0 0 REV__L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|174|1|anti-sense REV__L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|174|1|anti-sense MSMS UPN47_class_I_Rep_3 4 453.78521728515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 57.363 1 60.531 60.031 61.031 3.1681 0 0 0 0.40404 1 13250 13250 5.2307 0 1 + 41690 29107 26332 26344 47833 47833 0.1020473394231658 SLVIHEPI 8 Unmodified _SLVIHEPI_ 0 0 0 REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|74|1|anti-sense REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.2658996582031 2 454.26601 906.517468 0.063946 2.9048E-05 -0.06931 -3.1485E-05 -0.0053641 -2.4367E-06 454.2658838119339 57.284 1.8137 60.721 60.329 62.143 3.437 368 138 4 0 0 0 0.82752 1 13481 13481 8.5933 0 1 2509700 + 41691 32157 26333 26345 47834 47834 0.060469729028341135 SLVIHEPI 8 Unmodified _SLVIHEPI_ 0 0 0 REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|74|1|anti-sense REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|74|1|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2799377441406 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 58.792 1 62.209 61.709 62.709 3.4171 0 0 0 0.40404 1 13603 13603 5.2307 0 1 + 41692 32157 26333 26345 47835 47835 0.060469729028341135 SLVISIYEKMT 11 Unmodified _SLVISIYEKMT_ 0 0 0 REV__MLT1C_dup13815|chr12:104480598-104480936:+|3.4221113884737027|0.0088132972711758|8.6|151.0|3|1|sense REV__MLT1C_dup13815|chr12:104480598-104480936:+|3.4221113884737027|0.0088132972711758|8.6|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 642.3489379882812 2 642.349414 1282.68428 NaN NaN NaN NaN NaN NaN NaN 92.33 1 96.051 95.551 96.551 3.7209 0 0 0 0.38417 1 23011 23011 1.3295 0 1 + 41693 31634 26334 26346 47836 47836 0.05424032945552426 SLVIVHRK 8 Unmodified _SLVIVHRK_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 476.3062438964844 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 77.619 1 77.619 77.119 78.119 0 0 0 0 0.40746 1 18153 18153 0.69038 0 1 41694 8593 26335 26347 47837 47837 0.12525763159317194 SLVIVHRK 8 Unmodified _SLVIVHRK_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 476.3066711425781 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 84.307 1 84.307 83.807 84.807 0 0 0 0 0.40746 1 20053 20053 0.69038 0 1 41695 8593 26335 26347 47838 47838 0.12525763159317194 SLVIVHRK 8 Unmodified _SLVIVHRK_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|43|2|sense MSMS UPN47_class_I_Rep_3 4 476.3067321777344 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 64.601 1 67.775 67.275 68.275 3.1741 0 0 0 0.40604 1 15461 15461 2.5775 0 1 41696 8593 26335 26347 47839 47839 0.12525763159317194 SLVIVRRQKN 10 Unmodified _SLVIVRRQKN_ 0 0 0 L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|20|2|sense L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|20|2|sense L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 404.92315673828125 3 404.922689 1211.74624 NaN NaN NaN NaN NaN NaN NaN 36.924 1 40.323 39.823 40.823 3.3988 0 0 0 0.53105 1 6983 6983 0.69767 0 1 41697 8612 26336 26348 47840 47840 0.14883565199602344 SLVKGYKGFLN 11 Unmodified _SLVKGYKGFLN_ 0 0 0 REV__ENSG00000137776|ENST00000380516|SLTM REV__ENSG00000137776|ENST00000380516|SLTM MSMS UPN48_class_I_Rep_2 6 613.3516845703125 2 613.350606 1224.68666 NaN NaN NaN NaN NaN NaN NaN 69.416 1 72.938 72.438 73.438 3.5216 0 0 0 0.38417 1 16080 16080 2.7352 1.0826 1 + 41698 19243 26337 26349 47841 47841 0.08330249465575434 SLVPDKGELY 10 Unmodified _SLVPDKGELY_ 0 0 0 REV__L1M1_dup1474|chr3:41862107-41864346:-|1.6367887609965197|0.0133972677158079|6.93|151.0|61|3|sense REV__L1M1_dup1474|chr3:41862107-41864346:-|1.6367887609965197|0.0133972677158079|6.93|151.0|61|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.7981567382812 2 560.797872 1119.58119 0.36698 0.0002058 0.0054999 3.0843E-06 0.37248 0.00020889 560.7977125050662 48.548 0.85246 51.895 51.427 52.28 3.3465 94 43 3 0 0 0 0.44401 1 10572 10572 16.149 1.3108 1 420280 + 41699 24014 26338 26350 47842 47842 0.026182885492971764 SLVPERLGL 9 Unmodified _SLVPERLGL_ 0 0 0 MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|8|2|sense MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|8|2|sense MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 492.3109436035156 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 56.953 1 60.41 59.91 60.91 3.4572 0 0 0 0.29868 1 13047 13047 10.824 0 1 41700 15816 26339 26351 47843 47843 0.08914333339930636 SLVPGQIYI 9 Unmodified _SLVPGQIYI_ 0 0 0 REV__MER44B_dup543|chr4:73111066-73111551:-|1.015879512810968|0.0816192836799601|3.64|151.0|18|3|sense REV__MER44B_dup543|chr4:73111066-73111551:-|1.015879512810968|0.0816192836799601|3.64|151.0|18|3|sense MSMS UPN47_class_I_Rep_2 3 495.2871398925781 2 495.286943 988.559333 NaN NaN NaN NaN NaN NaN NaN 75.786 1 79.107 78.607 79.607 3.3216 0 0 0 0.39598 1 18731 18731 1.6526 0 1 + 41701 31319 26340 26352 47844 47844 0.06459528591346952 SLVPPCDEE 9 Unmodified _SLVPPCDEE_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MSMS UPN47_class_I_Rep_2 3 494.7176513671875 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 62.834 1 66.09 65.59 66.59 3.2558 0 0 0 0.38299 1 14866 14866 4.756 1.8668 1 + 41702 17625 26341 26353 47845 47845 -0.07230168070361742 SLVPPCDEE 9 Unmodified _SLVPPCDEE_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MSMS UPN48_class_I_Rep_1 5 494.7193298339844 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 32.038 1 35.565 35.065 36.065 3.5266 0 0 0 0.39428 1 4819 4819 2.0598 1.2661 1 + 41703 17625 26341 26353 47846 47846 -0.07230168070361742 SLVPPCDEE 9 Unmodified _SLVPPCDEE_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MSMS UPN48_class_I_Rep_1 5 494.7182922363281 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 39.152 1 42.656 42.156 43.156 3.5048 0 0 0 0.39428 1 6877 6877 2.0598 1.2661 1 + 41704 17625 26341 26353 47847 47847 -0.07230168070361742 SLVPPCDEE 9 Unmodified _SLVPPCDEE_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MSMS UPN48_class_I_Rep_3 7 494.718505859375 2 494.718233 987.421912 NaN NaN NaN NaN NaN NaN NaN 24.429 1 28.198 27.698 28.698 3.769 0 0 0 0.39428 1 2826 2826 2.0598 1.2661 1 + 41705 17625 26341 26353 47848 47848 -0.07230168070361742 SLVPPKMK 8 Unmodified _SLVPPKMK_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS UPN47_class_I_Rep_2 3 450.2744140625 2 450.272781 898.531009 NaN NaN NaN NaN NaN NaN NaN 85.148 1 88.571 88.071 89.071 3.4232 0 0 0 0.40625 1 21195 21195 2.3027 1.6124 1 + 41706 18606 26342 26354 47849 47849 0.07768507410446546 SLVPPKMK 8 Unmodified _SLVPPKMK_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS UPN47_class_I_Rep_3 4 450.2741394042969 2 450.272781 898.531009 NaN NaN NaN NaN NaN NaN NaN 84.912 1 88.274 87.774 88.774 3.3615 0 0 0 0.40625 1 21306 21306 2.3027 1.6124 1 + 41707 18606 26342 26354 47850 47850 0.07768507410446546 SLVQKEYED 9 Unmodified _SLVQKEYED_ 0 0 0 ENST00000435712.1_1_10:131904549-131906742:+|nuORF ENST00000435712.1_1_10:131904549-131906742:+|nuORF ENST00000435712.1_1_10:131904549-131906742:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 555.76904296875 2 555.769311 1109.52407 -0.042292 -2.3505E-05 0.22647 0.00012587 0.18418 0.00010236 555.7693555186319 30.378 1.2092 34.123 33.765 34.974 3.7449 224 95 4 0 0 0 0.49026 1 4868 4868 1.6526 1.6526 1 830250 41708 6747 26343 26355 47851 47851 -0.02631178727074257 SLVRKAFQ 8 Unmodified _SLVRKAFQ_ 0 0 0 Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|55|3|sense;Tigger1_dup10911|chr17:57298670-57299886:-|2.236484636227009|0.0174344482757077|7.0|151.0|7|1|sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|55|3|sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|55|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.28216552734375 2 474.784902 947.55525 0.23834 0.00011316 -1.4629 -0.00069457 -1.2246 -0.00058141 474.784168520156 41.14 0.34521 41.14 41.044 41.39 0 49 32 2 0 0 0 0.72333 1 8019 8019 2.5775 0 1 1358800 41709 33001 26344 26356 47852 47852 0.07937483888326824 SLVRPLTTP 9 Unmodified _SLVRPLTTP_ 0 0 0 REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF MSMS UPN47_class_I_Rep_2 3 492.31036376953125 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.59 1 60.881 60.381 61.381 3.2912 0 0 0 0.29868 1 13272 13272 10.824 0.75 1 + 41710 21617 26345 26357 47853 47853 0.08914333339930636 SLVSINVLH 9 Unmodified _SLVSINVLH_ 0 0 0 REV__L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|122|2|anti-sense REV__L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|122|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.2731628417969 2 491.290017 980.565481 0.13121 6.4463E-05 1.5238 0.00074862 1.655 0.00081308 491.2894445616422 56.601 0.32657 60.059 59.775 60.101 3.4572 43 17 4 0 0 0 0.33654 1 12896 12896 11.64 0 1 155210 + 41711 26699 26346 26358 47854 47854 0.07442046822893644 SLVVCVYTF 9 Unmodified _SLVVCVYTF_ 0 0 0 REV__LTR9B_dup229|chr5:76888676-76889343:+|3.095116162166008|0.0092762054449553|8.38|149.0|23|3|sense REV__LTR9B_dup229|chr5:76888676-76889343:+|3.095116162166008|0.0092762054449553|8.38|149.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 515.766845703125 2 515.767529 1029.5205 NaN NaN NaN NaN NaN NaN NaN 52.892 1 56.45 55.95 56.95 3.5585 0 0 0 0.35339 1 11804 11804 7.9102 0 1 + 41712 31043 26347 26359 47855 47855 0.006924799653461378 SLVVKREL 8 Unmodified _SLVVKREL_ 0 0 0 L1MA4_dup8745|chr15:61891781-61894023:+|1.3300900962105324|0.0659461370653314|4.33|151.0|10|1|sense L1MA4_dup8745|chr15:61891781-61894023:+|1.3300900962105324|0.0659461370653314|4.33|151.0|10|1|sense L1MA4_dup8745|chr15:61891781-61894023:+|1.3300900962105324|0.0659461370653314|4.33|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.30084228515625 2 472.300384 942.586216 0.076461 3.6113E-05 -0.051901 -2.4513E-05 0.02456 1.16E-05 472.30032405307594 48.223 0.53502 51.747 51.535 52.07 3.5239 44 34 2 0 0 0 0.82752 1 9613 9613 7.2892 0 1 72162 41713 9737 26348 26360 47856 47856 0.112626372025602 SLVVRKKRK 9 Unmodified _SLVVRKKRK_ 0 0 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MSMS UPN47_class_I_Rep_2 3 557.3805541992188 2 557.382574 1112.7506 NaN NaN NaN NaN NaN NaN NaN 37.842 1 41.23 40.73 41.73 3.3879 0 0 0 0.40038 1 7261 7261 0.6015 0 1 41714 3763 26349 26361 47857 47857 0.19873074413158065 SLVWRPDIV 9 Unmodified _SLVWRPDIV_ 0 0 0 ENSG00000129749|ENST00000250699|CHRNA10 ENSG00000129749|ENST00000250699|CHRNA10 ENSG00000129749|ENST00000250699|CHRNA10 MSMS UPN47_class_I_Rep_3 4 542.8103637695312 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 34.788 1 38.051 37.551 38.551 3.2639 0 0 0 0.38639 1 6366 6366 3.9444 0.3479 1 41715 2632 26350 26362 47858 47858 0.06922022231265146 SLVYKLVI 8 Unmodified _SLVYKLVI_ 0 0 0 REV__L1M2_dup3176|chr5:179996337-179997125:-|10.330475120672192|0.1110649560565113|6.54|151.0|48|3|anti-sense REV__L1M2_dup3176|chr5:179996337-179997125:-|10.330475120672192|0.1110649560565113|6.54|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_2 3 467.8011474609375 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 102.66 1 106.18 105.68 106.68 3.5231 0 0 0 0.40643 1 24983 24983 2.0598 0 1 + 41716 24195 26351 26363 47859 47859 0.12045306976403936 SLWCFPLFY 9 Unmodified _SLWCFPLFY_ 0 0 0 REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|29|1|anti-sense REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|29|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 588.2827758789062 2 588.283346 1174.55214 0.51966 0.00030571 -1.2182 -0.00071662 -0.6985 -0.00041092 588.2826197205549 58.456 0.61855 61.738 61.41 62.029 3.2818 62 34 3 0 0 0 0.33654 1 13502 13502 11.64 3.4848 1 169170 + 41717 23413 26352 26364 47860 47860 -0.028155272806998255 SLWCFPLFY 9 Unmodified _SLWCFPLFY_ 0 0 0 REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|29|1|anti-sense REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|29|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 588.283447265625 2 588.283346 1174.55214 0.34133 0.0002008 -1.3365 -0.00078626 -0.9952 -0.00058546 588.2826832700916 58.516 0.61197 61.682 61.346 61.958 3.1658 85 38 3 0 0 0 0.25207 3 13650 13570;13609;13650 16.942 8.7868 1 165850 + 41718 23413 26352 26364 47861;47862;47863 47863 -0.028155272806998255 SLWCFPLFY 9 Unmodified _SLWCFPLFY_ 0 0 0 REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|29|1|anti-sense REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|29|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 588.283346 1174.55214 0.34133 0.0002008 -1.3365 -0.00078626 -0.9952 -0.00058546 588.2826832700916 58.516 0.61197 61.682 61.346 61.958 3.1658 0.0075288 -0.0001044 NaN 16.942 85 38 3 NaN NaN NaN NaN 0 NaN NaN 0 165850 + 41719 23413 26352 26364 -0.028155272806998255 SLWEVPGPS 9 Unmodified _SLWEVPGPS_ 0 0 0 REV__L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|9|1|sense REV__L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 486.246337890625 2 486.245275 970.475997 NaN NaN NaN NaN NaN NaN NaN 48.768 1 52.45 51.95 52.95 3.6819 0 0 0 0.38478 1 10550 10550 4.3292 0 1 + 41720 25410 26353 26365 47864 47864 -0.010422078564602089 SLWPPLPRN 9 Unmodified _SLWPPLPRN_ 0 0 0 L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|166|3|anti-sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|166|3|anti-sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|166|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.302490234375 2 540.303458 1078.59236 0.37228 0.00020114 -2.1519 -0.0011627 -1.7796 -0.00096155 540.3023204755419 69.332 0.1701 72.7 72.632 72.802 3.3678 23 14 2 0 0 0 0.48846 1 16798 16798 1.8442 0.19162 1 128520 41721 8575 26354 26366 47865 47865 0.05621155434073444 SLWPPLPRN 9 Unmodified _SLWPPLPRN_ 0 0 0 L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|166|3|anti-sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|166|3|anti-sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|166|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 540.303458 1078.59236 0.42583 0.00023008 -2.2325 -0.0012062 -1.8066 -0.00097613 540.3020569035087 69.714 0.20062 72.919 72.79 72.99 3.2044 0.10947 -5.7533E-05 NaN 1.8442 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 48904 41722 8575 26354 26366 0.05621155434073444 SLWPRRIRK 9 Unmodified _SLWPRRIRK_ 0 0 0 HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|11|1|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|11|1|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|11|1|sense MSMS UPN47_class_I_Rep_1 2 404.5887756347656 3 404.587641 1210.74109 NaN NaN NaN NaN NaN NaN NaN 38.632 1 42.298 41.798 42.798 3.6652 0 0 0 0.39887 1 7466 7466 0.96228 0.26461 1 41723 8090 26355 26367 47866 47866 0.14415306127625627 SLWVTCCSS 9 Unmodified _SLWVTCCSS_ 0 0 0 Tigger1_dup11215|chr18:36022006-36022680:+|2.215880636987275|0.1329595447936842|4.06|151.0|30|1|anti-sense Tigger1_dup11215|chr18:36022006-36022680:+|2.215880636987275|0.1329595447936842|4.06|151.0|30|1|anti-sense Tigger1_dup11215|chr18:36022006-36022680:+|2.215880636987275|0.1329595447936842|4.06|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.20941162109375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 29.929 1 33.658 33.158 34.158 3.7286 0 0 0 0.38478 1 4256 4256 4.3292 0 1 41724 33008 26356 26368 47867 47867 -0.08833786877005423 SLWVWKRVR 9 Unmodified _SLWVWKRVR_ 0 0 0 REV__MER58B_dup670|chr2:61193797-61194101:-|1.6223347940028074|0.4531681224855657|1.84|151.0|20|2|anti-sense REV__MER58B_dup670|chr2:61193797-61194101:-|1.6223347940028074|0.4531681224855657|1.84|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_1 2 615.36767578125 2 615.366924 1228.7193 NaN NaN NaN NaN NaN NaN NaN 88.613 1 92.269 91.769 92.769 3.6563 0 0 0 0.4007 1 22161 22161 0.52476 0 1 + 41725 31471 26357 26369 47868 47868 0.11408501379059999 SLWVWKRVR 9 Unmodified _SLWVWKRVR_ 0 0 0 REV__MER58B_dup670|chr2:61193797-61194101:-|1.6223347940028074|0.4531681224855657|1.84|151.0|20|2|anti-sense REV__MER58B_dup670|chr2:61193797-61194101:-|1.6223347940028074|0.4531681224855657|1.84|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_1 5 615.27978515625 2 615.366924 1228.7193 NaN NaN NaN NaN NaN NaN NaN 71.889 1 75.355 74.855 75.855 3.466 0 0 0 0.4007 1 16840 16840 0.52476 0 1 + 41726 31471 26357 26369 47869 47869 0.11408501379059999 SLYAYTTIF 9 Unmodified _SLYAYTTIF_ 0 0 0 L1MB3_dup12867|chr14:21467545-21468239:+|1.2593445444303288|0.2933845567208518|2.1|151.0|41|2|anti-sense L1MB3_dup12867|chr14:21467545-21468239:+|1.2593445444303288|0.2933845567208518|2.1|151.0|41|2|anti-sense L1MB3_dup12867|chr14:21467545-21468239:+|1.2593445444303288|0.2933845567208518|2.1|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 539.7759399414062 2 539.776408 1077.53826 0.59365 0.00032044 -0.35685 -0.00019262 0.23679 0.00012781 539.7762261584274 77.705 0.53017 81.306 81.072 81.602 3.6016 97 53 2 0 0 0 0.26948 1 18331 18331 15.847 0 1 158510 41727 10336 26358 26370 47870 47870 0.002595184918391169 SLYCTGVPDSL 11 Unmodified _SLYCTGVPDSL_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MSMS UPN47_class_I_Rep_1 2 577.7734375 2 577.773539 1153.53253 0.33979 0.00019632 -0.64365 -0.00037188 -0.30386 -0.00017556 577.7732218466401 55.812 0.75116 59.29 59.029 59.78 3.4785 84 43 3 0 0 0 0.29515 1 12682 12682 22.736 0.98964 1 211210 + 41728 19908 26359 26371 47871 47871 -0.038099480821074394 SLYCTGVPDSL 11 Unmodified _SLYCTGVPDSL_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 577.773539 1153.53253 0.33979 0.00019632 -0.64365 -0.00037188 -0.30386 -0.00017556 577.7732218466401 55.812 0.75116 59.29 59.029 59.78 3.4785 -0.06528 -0.0002973 NaN 22.736 84 43 3 NaN NaN NaN NaN 0 NaN NaN 0 211210 + 41729 19908 26359 26371 -0.038099480821074394 SLYCTGVPDSL 11 Unmodified _SLYCTGVPDSL_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MATCH UPN47_class_I_Rep_2 3 2 577.773539 1153.53253 0.51822 0.00029941 -0.21538 -0.00012444 0.30285 0.00017498 577.7731795771746 56.075 0.73679 59.375 59.063 59.8 3.3009 0.019633 0.00019758 NaN 22.736 61 44 2 NaN NaN NaN NaN 0 NaN NaN 0 174440 + 41730 19908 26359 26371 -0.038099480821074394 SLYCTGVPDSL 11 Unmodified _SLYCTGVPDSL_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MATCH UPN47_class_I_Rep_3 4 2 577.773539 1153.53253 0.40102 0.0002317 -0.48792 -0.00028191 -0.086909 -5.0214E-05 577.7731116497256 56.229 0.78935 59.401 59.098 59.888 3.1721 0.045646 -0.00011736 NaN 22.736 65 49 2 NaN NaN NaN NaN 0 NaN NaN 0 125560 + 41731 19908 26359 26371 -0.038099480821074394 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_1 2 549.758544921875 2 549.758746 1097.50294 0.43637 0.0002399 -0.3892 -0.00021397 0.047169 2.5931E-05 549.7584116307164 61.211 0.46515 64.592 64.452 64.917 3.3815 52 32 2 0 0 0 0.21414 1 14344 14344 19.362 9.9788 1 85244 41732 5036 26360 26372 47872 47872 -0.041911440359626795 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_2 3 550.2596435546875 2 549.758746 1097.50294 0.44548 0.0002449 -0.2137 -0.00011748 0.23178 0.00012742 549.7586805540807 61.395 0.49418 64.659 64.515 65.009 3.2639 48 28 2 0 0 0 0.17897 3 14419 14419;14460;14500 22.736 11.912 1 118790 41733 5036 26360 26372 47873;47874;47875 47873 -0.041911440359626795 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN47_class_I_Rep_3 4 549.7594604492188 2 549.758746 1097.50294 0.38082 0.00020936 -0.54764 -0.00030107 -0.16682 -9.1711E-05 549.7584237694606 61.552 0.46552 64.719 64.452 64.918 3.1667 49 33 2 0 0 0 0.10568 3 14499 14499;14522;14573 32.786 18.88 1 162150 41734 5036 26360 26372 47876;47877;47878 47876 -0.041911440359626795 SLYEELLDV 9 Unmodified _SLYEELLDV_ 0 0 0 REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|366|3|anti-sense REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|366|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.6921997070312 2 540.776605 1079.53866 NaN NaN NaN NaN NaN NaN NaN 64.027 1 64.027 63.527 64.527 0 0 0 0 0.29868 1 14388 14388 10.824 0 1 + 41735 30201 26361 26373 47879 47879 0.0020689342104560637 SLYEMVSRV 9 Oxidation (M) _SLYEM(Oxidation (M))VSRV_ SLYEM(1)VSRV SLYEM(44)VSRV 0 0 1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MSMS UPN47_class_I_Rep_2 3 550.2764282226562 2 550.276249 1098.53795 NaN NaN NaN NaN NaN NaN NaN 45.398 1 48.752 48.252 49.252 3.3534 0 0 0 0.031346 1 9563 9563 43.982 22.235 1 41736 3529 26362 26374 47880 47880 118 -0.007382244996506415 SLYEMVSRV 9 Oxidation (M) _SLYEM(Oxidation (M))VSRV_ SLYEM(1)VSRV SLYEM(44)VSRV 0 0 1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MSMS UPN47_class_I_Rep_3 4 550.2763061523438 2 550.276249 1098.53795 NaN NaN NaN NaN NaN NaN NaN 45.573 1 48.817 48.317 49.317 3.2441 0 0 0 0.031346 1 9669 9669 43.982 18.583 1 41737 3529 26362 26374 47881 47881 118 -0.007382244996506415 SLYFLYLT 8 Unmodified _SLYFLYLT_ 0 0 0 L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|36|3|anti-sense L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|36|3|anti-sense L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_2 6 510.72564697265625 2 510.276044 1018.53753 NaN NaN NaN NaN NaN NaN NaN 26.23 1 29.863 29.363 30.363 3.6332 0 0 0 0.40364 1 3314 3314 5.7604 0 1 41738 13143 26363 26375 47882 47882 0.02900723842788011 SLYFPFLY 8 Unmodified _SLYFPFLY_ 0 0 0 L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|134|3|anti-sense L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|134|3|anti-sense L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|134|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.2926635742188 2 525.270761 1048.52697 0.22174 0.00011647 -0.79062 -0.00041529 -0.56888 -0.00029881 525.2702436212222 51.706 0.70461 55.299 54.994 55.698 3.5932 83 41 3 0 0 0 0.82752 1 11509 11509 10.183 0 1 163790 41739 13271 26364 26376 47883 47883 0.004647411883979657 SLYKRVELV 9 Unmodified _SLYKRVELV_ 0 0 0 REV__Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|14|1|sense REV__Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 553.8303833007812 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 85.536 1 85.536 85.036 86.036 0 0 0 0 0.38784 1 20410 20410 3.5965 0 1 + 41740 32632 26365 26377 47884 47884 0.10094577919812764 SLYLSALIHP 10 Unmodified _SLYLSALIHP_ 0 0 0 REV__HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|59|3|sense REV__HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|59|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.318603515625 2 557.318774 1112.623 -0.019185 -1.0692E-05 0.22546 0.00012565 0.20627 0.00011496 557.3186800656723 37.724 0.82755 41.39 41.053 41.881 3.6652 134 62 3 0 0 0 0.56078 2 7105 7105;7304 3.2813 0 1 160850 + 41741 23600 26366 26378 47885;47886 47885 0.07118889028470221 SLYLTGFSMC 10 Unmodified _SLYLTGFSMC_ 0 0 0 REV__L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|78|3|anti-sense REV__L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|78|3|anti-sense MSMS UPN48_class_I_Rep_3 7 561.688720703125 2 561.253928 1120.4933 NaN NaN NaN NaN NaN NaN NaN 86.25 1 90.02 89.52 90.52 3.7701 0 0 0 0.53105 1 20476 20476 1.4819 0.51963 1 + 41742 28584 26367 26379 47887 47887 -0.06212371637320757 SLYNKEMLNF 10 Unmodified _SLYNKEMLNF_ 0 0 0 L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|165|2|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|165|2|anti-sense L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|165|2|anti-sense MSMS UPN48_class_I_Rep_3 7 629.808349609375 2 629.810456 1257.60636 NaN NaN NaN NaN NaN NaN NaN 65.149 1 68.657 68.157 69.157 3.5077 0 0 0 0.53105 1 14700 14700 11.495 0.67078 1 41743 9676 26368 26380 47888 47888 -0.012139799197711909 SLYPRGIQF 9 Unmodified _SLYPRGIQF_ 0 0 0 ENST00000562472.5_1_16:28996642-28997538:+|nuORF;ENST00000566270.5_1_16:28996642-28997322:+|nuORF;nc|ENSG00000213658|O43561-4|LAT;ENSG00000213658|ENST00000395456|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT;nc|ENSG00000213658|O43561-3|LAT ENST00000562472.5_1_16:28996642-28997538:+|nuORF ENST00000562472.5_1_16:28996642-28997538:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.7962036132812 2 540.795466 1079.57638 0.29953 0.00016199 1.9247 0.0010409 2.2243 0.0012029 540.7964978110058 63.852 0.10674 63.852 63.808 63.914 0 22 14 2 0 0 0 0.066633 1 14347 14347 41.84 7.4379 1 374040 41744 5598 26369 26381 47889 47889 0.03977449197191163 SLYPRGIQF 9 Unmodified _SLYPRGIQF_ 0 0 0 ENST00000562472.5_1_16:28996642-28997538:+|nuORF;ENST00000566270.5_1_16:28996642-28997322:+|nuORF;nc|ENSG00000213658|O43561-4|LAT;ENSG00000213658|ENST00000395456|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT;nc|ENSG00000213658|O43561-3|LAT ENST00000562472.5_1_16:28996642-28997538:+|nuORF ENST00000562472.5_1_16:28996642-28997538:+|nuORF MSMS UPN46_class_I_Rep_3 1 540.3121948242188 2 540.795466 1079.57638 NaN NaN NaN NaN NaN NaN NaN 63.716 1 63.716 63.216 64.216 0 0 0 0 0.078496 1 14318 14318 29.082 3.6823 1 41745 5598 26369 26381 47890 47890 0.03977449197191163 SLYQVLASV 9 Unmodified _SLYQVLASV_ 0 0 0 ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS UPN47_class_I_Rep_1 2 490.2761535644531 2 490.276575 978.538597 0.15784 7.7386E-05 0.064975 3.1856E-05 0.22282 0.00010924 490.2765148251913 62.022 1.6372 65.39 64.927 66.564 3.3681 292 114 4 0 0 0 0.12795 1 14858 14858 28.495 0 1 2209000 41746 4087 26370 26382 47891 47891 0.04846938211710494 SLYRESQPI 9 Unmodified _SLYRESQPI_ 0 0 0 Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.7882080078125 2 546.787838 1091.56112 0.45286 0.00024762 -0.26664 -0.0001458 0.18621 0.00010182 546.7877874598333 43.71 0.73442 47.22 46.878 47.612 3.5103 85 62 3 0 0 0 0.19147 5 8199 8160;8199;8240;8283;8304 21.537 4.4241 1 168770 41747 32971 26371 26383 47892;47893;47894;47895;47896 47893 0.019005376093446102 SLYRESQPI 9 Unmodified _SLYRESQPI_ 0 0 0 Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.7866821289062 2 546.787838 1091.56112 0.41364 0.00022617 -0.18856 -0.0001031 0.22508 0.00012307 547.2891766416117 43.469 0.74648 47.231 46.855 47.602 3.7617 107 59 2 0 0 0 0.279 2 8225 8095;8225 15.248 3.7538 1 188570 41748 32971 26371 26383 47897;47898 47898 0.019005376093446102 SLYRESQPI 9 Unmodified _SLYRESQPI_ 0 0 0 Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|140|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.7877807617188 2 546.787838 1091.56112 0.37841 0.00020691 -0.13842 -7.5688E-05 0.23998 0.00013122 546.7877550157667 43.543 0.79721 47.182 46.889 47.686 3.6385 92 56 2 0 0 0 0.26468 4 8136 8048;8078;8136;8195 16.149 1.7437 1 172580 41749 32971 26371 26383 47899;47900;47901;47902 47901 0.019005376093446102 SLYSLIKIY 9 Unmodified _SLYSLIKIY_ 0 0 0 REV__L1PREC2_dup7311|chr19:21400798-21401616:-|1.9394941166039696|0.3904762258154093|2.31|151.0|29|3|sense REV__L1PREC2_dup7311|chr19:21400798-21401616:-|1.9394941166039696|0.3904762258154093|2.31|151.0|29|3|sense MSMS UPN47_class_I_Rep_2 3 550.3252563476562 2 550.323525 1098.6325 NaN NaN NaN NaN NaN NaN NaN 65.347 1 68.603 68.103 69.103 3.2556 0 0 0 0.39326 1 15628 15628 2.3027 0 1 + 41750 30751 26372 26384 47903 47903 0.08712657314003991 SLYVEWREFPI 11 Unmodified _SLYVEWREFPI_ 0 0 0 HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|1|1|sense HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|1|1|sense HAL1_dup10140|chr7:45039198-45039744:+|2.1338018316324243|0.0671998022108127|4.99|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.2501525878906 3 480.25036 1437.72925 0.038078 1.8287E-05 -0.032096 -1.5414E-05 0.005982 2.8729E-06 480.25029525999446 56.264 0.81988 59.436 59.184 60.004 3.1721 91 51 2 0 0 0 0.57454 1 12879 12879 5.8681 3.0249 1 145540 41751 7781 26373 26385 47904 47904 0.027895998031453928 SLYVFTFF 8 Unmodified _SLYVFTFF_ 0 0 0 REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|162|2|anti-sense REV__L1MA4_dup2110|chr3:174850332-174853083:+|1.1085636886041188|0.1156768567669868|3.26|142.0|162|2|anti-sense MSMS UPN46_class_I_Rep_3 1 512.1064453125 2 512.262936 1022.51132 NaN NaN NaN NaN NaN NaN NaN 42.369 1 42.369 41.869 42.869 0 0 0 0 0.40604 1 8382 8382 2.5775 1.7838 1 + 41752 25146 26374 26386 47905 47905 0.0009645467133623242 SMAPVSWITPG 11 Unmodified _SMAPVSWITPG_ 0 0 0 ENSG00000121410|ENST00000263100|A1BG ENSG00000121410|ENST00000263100|A1BG ENSG00000121410|ENST00000263100|A1BG MSMS UPN48_class_I_Rep_1 5 573.2888793945312 2 573.286617 1144.55868 NaN NaN NaN NaN NaN NaN NaN 44.815 1 48.328 47.828 48.828 3.5132 0 0 0 0.38417 1 8574 8574 2.9952 0.93549 1 41753 2357 26375 26387 47906 47906 -0.007816341199941235 SMDTLLATL 9 Unmodified _SMDTLLATL_ 0 0 0 ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF ENSG00000177556|ENST00000313115|ATOX1 ENSG00000177556|ENST00000313115|ATOX1 MULTI-MSMS UPN47_class_I_Rep_1 2 482.75445556640625 2 482.754618 963.494683 0.0977 4.7165E-05 -0.23671 -0.00011427 -0.13901 -6.7106E-05 482.75434463357846 68.743 0.4707 72.107 71.859 72.33 3.3646 51 36 2 0 0 0 0.36392 1 16632 16632 10.074 0 1 70430 41754 4797 26376 26388 47907 47907 0.011475857230834663 SMEHRSQN 8 Unmodified _SMEHRSQN_ 0 0 0 ENSG00000169905.13,TOR1AIP2,chr1,-,I2.1,179876178,179877238|35|6.26|2|intron ENSG00000169905.13,TOR1AIP2,chr1,-,I2.1,179876178,179877238|35|6.26|2|intron ENSG00000169905.13,TOR1AIP2,chr1,-,I2.1,179876178,179877238|35|6.26|2|intron MSMS UPN47_class_I_Rep_3 4 494.71826171875 2 494.71689 987.419227 NaN NaN NaN NaN NaN NaN NaN 52.114 1 55.32 54.82 55.82 3.2055 0 0 0 0.40625 1 11655 11655 2.3027 0 1 41755 4444 26377 26389 47908 47908 -0.07498578684635504 SMHLCISPNL 10 Unmodified _SMHLCISPNL_ 0 0 0 L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|94|2|anti-sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|94|2|anti-sense L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|94|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.7723999023438 2 557.772819 1113.53109 0.46006 0.00025661 -0.88431 -0.00049325 -0.42425 -0.00023664 557.7721913811048 61.457 0.80403 64.716 64.479 65.283 3.2594 101 51 3 0 0 0 0.54466 1 14435 14435 6.2058 0 1 380010 41756 13256 26378 26390 47909 47909 -0.021138606518661618 SMHRKVEQI 9 Unmodified _SMHRKVEQI_ 0 0 0 REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 564.3026123046875 2 564.303133 1126.59171 0.42118 0.00023767 0.61151 0.00034508 1.0327 0.00058275 564.3033799249791 80.808 0.64322 84.296 84.064 84.707 3.4874 88 64 2 0 0 0 0.39745 1 20130 20130 8.1555 1.4324 1 130230 + 41757 19792 26379 26391 47910 47910 0.03347992722751769 SMKMLGLH 8 Unmodified _SMKMLGLH_ 0 0 0 REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|95|2|sense REV__L1MB7_dup8477|chr7:35816068-35819976:-|3.7286453026228186|0.0465478837231423|6.32|151.0|95|2|sense MSMS UPN46_class_I_Rep_3 1 458.7491760253906 2 458.740791 915.467029 NaN NaN NaN NaN NaN NaN NaN 47.029 1 47.029 46.529 47.529 0 0 0 0 0.40738 1 9691 9691 0.79363 0 1 + 41758 26321 26380 26392 47911 47911 0.005914039818321726 SMLLLLIFFA 10 Unmodified _SMLLLLIFFA_ 0 0 0 ENSG00000091039.17,OSBPL8,chr12,-,I3.1,76534282,76537003|28|9.74|1|intron ENSG00000091039.17,OSBPL8,chr12,-,I3.1,76534282,76537003|28|9.74|1|intron ENSG00000091039.17,OSBPL8,chr12,-,I3.1,76534282,76537003|28|9.74|1|intron MSMS UPN46_class_I_Rep_3 1 584.21728515625 2 584.345946 1166.67734 NaN NaN NaN NaN NaN NaN NaN 40.21 1 40.21 39.71 40.71 0 0 0 0 0.53105 1 7788 7788 1.8442 0 1 41759 1364 26381 26393 47912 47912 0.1006676485569642 SMPCCSCC 8 Unmodified _SMPCCSCC_ 0 0 0 REV__ENSG00000205362|ENST00000290705|MT1A REV__ENSG00000205362|ENST00000290705|MT1A MSMS UPN47_class_I_Rep_3 4 417.1083068847656 2 417.10958 832.204608 NaN NaN NaN NaN NaN NaN NaN 92.532 1 95.936 95.436 96.436 3.4034 0 0 0 0.40746 1 23100 23100 0.69038 0.69038 1 + 41760 21220 26382 26394 47913 47913 -0.21820624412271172 SMRLFLFDS 9 Unmodified _SMRLFLFDS_ 0 0 0 REV__L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|60|1|anti-sense REV__L1MEg_dup6165|chr6:163473502-163474582:+|1.6759335759510237|0.0127401342270519|7.04|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_3 4 558.2830810546875 2 558.281334 1114.54812 NaN NaN NaN NaN NaN NaN NaN 50.895 1 54.112 53.612 54.612 3.2163 0 0 0 0.38639 1 11283 11283 3.9444 0 1 + 41761 28770 26383 26395 47914 47914 -0.004576167744062332 SMRLIVSNDCH 11 Unmodified _SMRLIVSNDCH_ 0 0 0 REV__L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|67|1|anti-sense REV__L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|67|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 637.8057861328125 2 637.802639 1273.59073 0.4249 0.000271 2.287 0.0014586 2.7119 0.0017296 637.804032916288 65.492 0.45604 68.847 68.623 69.08 3.3557 35 22 2 0 0 0 0.65559 1 15587 15587 2.7352 0.23671 1 77933 + 41762 27421 26384 26396 47915 47915 -0.03512589708475389 SMRWAWMH 8 Unmodified _SMRWAWMH_ 0 0 0 REV__LTR1A2_dup138|chr3:23861404-23862188:+|3.401244855617156|0.1117193293757358|4.93|151.0|27|1|anti-sense REV__LTR1A2_dup138|chr3:23861404-23862188:+|3.401244855617156|0.1117193293757358|4.93|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_1 5 552.7446899414062 2 552.746939 1103.47932 NaN NaN NaN NaN NaN NaN NaN 117.04 1 120.66 120.16 121.16 3.6254 0 0 0 0.40738 1 28519 28519 0.79363 0 1 + 41763 30868 26385 26397 47916 47916 -0.06827559555131302 SMSTPGTIKY 10 Unmodified _SMSTPGTIKY_ 0 0 0 REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|13|1|sense REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 542.28662109375 2 542.7708 1083.52705 NaN NaN NaN NaN NaN NaN NaN 24.457 1 28.097 27.597 28.597 3.6397 0 0 0 0.53105 1 2842 2842 1.1933 0 1 + 41764 26956 26386 26398 47917 47917 -0.011376268739240913 SMSWRVYW 8 Unmodified _SMSWRVYW_ 0 0 0 REV__Charlie7_dup135|chr1:114741989-114742308:+|1.0090802082539734|0.0833351610923537|3.6|151.0|12|3|sense REV__Charlie7_dup135|chr1:114741989-114742308:+|1.0090802082539734|0.0833351610923537|3.6|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 557.75830078125 2 557.760569 1113.50659 NaN NaN NaN NaN NaN NaN NaN 17.967 1 21.354 20.854 21.854 3.387 0 0 0 0.40746 1 1439 1439 0.69038 0 1 + 41765 17389 26387 26399 47918 47918 -0.045627527430951886 SMVTHTIDKNY 11 Unmodified _SMVTHTIDKNY_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.8789367675781 3 436.879939 1307.61799 0.10613 4.6367E-05 -0.63256 -0.00027635 -0.52643 -0.00022999 436.8792289283208 86.808 0.20374 90.445 90.327 90.531 3.6372 32 21 2 0 0 0 0.68081 1 21694 21694 0.45452 0.1855 1 49313 41766 12479 26388 26400 47919 47919 -0.023517828964486398 SMVTHTIDKNY 11 Unmodified _SMVTHTIDKNY_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.8790283203125 3 436.879939 1307.61799 0.15066 6.5822E-05 -0.60387 -0.00026382 -0.45321 -0.000198 436.87912215729125 94.499 0.53444 98.25 98.12 98.655 3.7508 98 74 2 0 0 0 0.68081 1 23486 23486 0.45452 0.1855 1 78818 41767 12479 26388 26400 47920 47920 -0.023517828964486398 SMVTHTIDKNY 11 Unmodified _SMVTHTIDKNY_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 436.7741394042969 3 436.879939 1307.61799 -0.048591 -2.1228E-05 -0.33062 -0.00014444 -0.37921 -0.00016567 436.8793029041383 94.316 0.23668 97.937 97.762 97.999 3.6208 38 27 2 0 0 0 22.551 1 22672 22672 0.45452 0 1 71327 41768 12479 26388 26400 47921 47921 -0.023517828964486398 SMVTHTIDKNY 11 Unmodified _SMVTHTIDKNY_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 436.254150390625 3 436.879939 1307.61799 -0.048507 -2.1192E-05 -0.035347 -1.5443E-05 -0.083855 -3.6634E-05 437.21490398597336 103.09 0.27013 106.7 106.58 106.85 3.6164 47 35 2 0 0 0 22.551 1 24833 24833 1.3296 0 1 128590 41769 12479 26388 26400 47922 47922 -0.023517828964486398 SMVTHTIDKNY 11 Unmodified _SMVTHTIDKNY_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.879939 1307.61799 -0.32368 -0.00014141 0.54728 0.00023909 0.2236 9.7685E-05 437.2150280976449 102.98 0.083633 106.49 106.45 106.53 3.5057 -0.09314 0.00055768 NaN 1.3296 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 94359 41770 12479 26388 26400 -0.023517828964486398 SMVTHTIDKNY 11 Unmodified _SMVTHTIDKNY_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|42|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.879939 1307.61799 0.10863 4.7459E-05 0.031358 1.37E-05 0.13999 6.1159E-05 436.879396789903 102.85 0.076065 106.56 106.51 106.59 3.7108 -0.025941 -0.00011851 NaN 1.3296 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 53237 41771 12479 26388 26400 -0.023517828964486398 SMWCLALIWFR 11 Unmodified _SMWCLALIWFR_ 0 0 0 REV__L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|329|3|anti-sense REV__L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|329|3|anti-sense MSMS UPN48_class_I_Rep_2 6 475.5783996582031 3 475.910516 1424.70972 NaN NaN NaN NaN NaN NaN NaN 43.199 1 46.96 46.46 47.46 3.7617 0 0 0 0.38417 1 8090 8090 1.1098 0.33322 1 + 41772 29743 26389 26401 47923 47923 0.01435228986997572 SMWWLQFLC 9 Unmodified _SMWWLQFLC_ 0 0 0 REV__MLT1C_dup6236|chr5:139576159-139576489:-|1.7942197657942445|0.0090889142906821|7.63|151.0|21|3|anti-sense REV__MLT1C_dup6236|chr5:139576159-139576489:-|1.7942197657942445|0.0090889142906821|7.63|151.0|21|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 405.2404479980469 3 405.189279 1212.54601 0.14014 5.6782E-05 0.087877 3.5607E-05 0.22801 9.2389E-05 405.52410157508905 76.812 0.19009 80.395 80.276 80.467 3.5831 27 20 2 0 0 0 0.12444 1 18104 18104 1.0715 0 1 61869 + 41773 31651 26390 26402 47924 47924 -0.05176368783850194 SMYDKVLML 9 2 Oxidation (M) _SM(Oxidation (M))YDKVLM(Oxidation (M))L_ SM(1)YDKVLM(1)L SM(59)YDKVLM(59)L 0 0 2 ENST00000485692.1_1_9:135919116-135919314:+|nuORF;GTF3C5|p.P170Tfs*32|1|0.04|ENSG00000148308|chr9:133043858-133043859|CC/-|frameshift_variant;nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5 ENST00000485692.1_1_9:135919116-135919314:+|nuORF ENST00000485692.1_1_9:135919116-135919314:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 566.2755126953125 2 566.27486 1130.53517 0.31298 0.00017723 0.40652 0.0002302 0.7195 0.00040743 566.2753265191079 53.754 0.83194 57.282 56.963 57.795 3.5278 122 48 4 0 0 0 0.026395 2 12078 12038;12078 59.368 13.441 1 498110 41774 3497 26391 26403 47925;47926 47926 116;117 -0.02487815948802563 SMYDKVLML 9 2 Oxidation (M) _SM(Oxidation (M))YDKVLM(Oxidation (M))L_ SM(1)YDKVLM(1)L SM(51)YDKVLM(51)L 0 0 2 ENST00000485692.1_1_9:135919116-135919314:+|nuORF;GTF3C5|p.P170Tfs*32|1|0.04|ENSG00000148308|chr9:133043858-133043859|CC/-|frameshift_variant;nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5 ENST00000485692.1_1_9:135919116-135919314:+|nuORF ENST00000485692.1_1_9:135919116-135919314:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 566.2754516601562 2 566.27486 1130.53517 0.51719 0.00029287 0.13411 7.5942E-05 0.65129 0.00036881 566.2752418236394 54.034 0.92218 57.352 57.003 57.925 3.3187 133 52 4 0 0 0 0.04399 2 12203 12117;12203 51.415 27.141 1 509330 41775 3497 26391 26403 47927;47928 47928 116;117 -0.02487815948802563 SMYDKVLML 9 2 Oxidation (M) _SM(Oxidation (M))YDKVLM(Oxidation (M))L_ SM(1)YDKVLM(1)L SM(51)YDKVLM(51)L 0 0 2 ENST00000485692.1_1_9:135919116-135919314:+|nuORF;GTF3C5|p.P170Tfs*32|1|0.04|ENSG00000148308|chr9:133043858-133043859|CC/-|frameshift_variant;nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5 ENST00000485692.1_1_9:135919116-135919314:+|nuORF ENST00000485692.1_1_9:135919116-135919314:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 566.27587890625 2 566.27486 1130.53517 0.45997 0.00026047 0.37471 0.00021219 0.83467 0.00047265 566.2751843564222 54.14 0.96013 57.325 56.996 57.956 3.1856 147 59 3 0 0 0 0.04399 5 12253 12213;12246;12253;12285;12325 51.415 15.103 1 566620 41776 3497 26391 26403 47929;47930;47931;47932;47933 47931 116;117 -0.02487815948802563 SMYIGPFM 8 Unmodified _SMYIGPFM_ 0 0 0 REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|344|2|anti-sense REV__L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|344|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.21533203125 2 473.214075 944.413596 -0.22961 -0.00010866 0.48411 0.00022909 0.2545 0.00012043 473.21429868756854 43.021 0.84123 46.379 46.077 46.918 3.358 80 57 2 0 0 0 0.82752 1 8780 8780 9.3474 2.9933 1 87994 + 41777 30609 26392 26404 47934 47934 -0.060833935206687784 SMYMKYPEQ 9 Unmodified _SMYMKYPEQ_ 0 0 0 L1MB5_dup5934|chr11:45959704-45960706:+|1.4056654109105022|0.0191606989555073|6.2|151.0|19|2|sense L1MB5_dup5934|chr11:45959704-45960706:+|1.4056654109105022|0.0191606989555073|6.2|151.0|19|2|sense L1MB5_dup5934|chr11:45959704-45960706:+|1.4056654109105022|0.0191606989555073|6.2|151.0|19|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 588.2550048828125 2 588.756835 1175.49912 0.41677 0.00024537 -0.81414 -0.00047933 -0.39737 -0.00023396 588.7564837399113 63.055 0.10006 66.225 66.14 66.24 3.1698 7 5 2 0 0 0 0.12383 1 14986 14986 3.2813 1.4371 1 43941 41778 10631 26393 26405 47935 47935 -0.08161273125665502 SNAEIQFHIAH 11 Unmodified _SNAEIQFHIAH_ 0 0 0 ENST00000474365.1_1_Y:15505723-15591217:-|nuORF;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;nc|ENSG00000147050|O15550|KDM6A;ENSG00000183878|ENST00000545955|UTY;ENSG00000147050|ENST00000611820|KDM6A ENST00000474365.1_1_Y:15505723-15591217:-|nuORF ENST00000474365.1_1_Y:15505723-15591217:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 633.8172607421875 2 633.814919 1265.61528 0.62384 0.0003954 0.58334 0.00036973 1.2072 0.00076513 633.8143196704666 61.838 0.053513 65.348 65.332 65.385 3.5104 5 4 2 0 0 0 0.67264 1 13703 13703 1.1933 0.59184 1 57165 41779 3457 26394 26406 47936 47936 -0.006898702391026745 SNCNKSKNW 9 Unmodified _SNCNKSKNW_ 0 0 0 L1PA13_dup2800|chr5:87305206-87306626:+|2.5134260490684097|0.2283396888829129|3.46|151.0|21|2|sense;L1PA14_dup2200|chr10:20263044-20264471:+|1.3377279755372773|0.0512824477646913|4.71|149.0|40|3|sense;L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|54|1|sense;L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|62|3|sense;L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|68|2|sense L1PA13_dup2800|chr5:87305206-87306626:+|2.5134260490684097|0.2283396888829129|3.46|151.0|21|2|sense L1PA13_dup2800|chr5:87305206-87306626:+|2.5134260490684097|0.2283396888829129|3.46|151.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 540.8135986328125 2 540.74819 1079.48183 NaN NaN NaN NaN NaN NaN NaN 69.523 1 69.523 69.023 70.023 0 0 0 0 0.38916 1 15936 15936 3.2813 0.39209 1 41780 13624 26395 26407 47937 47937 -0.05473432616440732 SNEEVEDESEP 11 Unmodified _SNEEVEDESEP_ 0 0 0 REV__ENST00000253968.10_1_9:96714524-96715047:-|nuORF REV__ENST00000253968.10_1_9:96714524-96715047:-|nuORF MSMS UPN47_class_I_Rep_1 2 421.822021484375 3 421.833488 1262.47864 NaN NaN NaN NaN NaN NaN NaN 12.235 1 15.685 15.185 16.185 3.45 0 0 0 0.38417 1 47 47 0 0 1 + 41781 21529 26396 26408 47938 47938 -0.14210493770815447 SNFKTYLTI 9 Unmodified _SNFKTYLTI_ 0 0 0 REV__L1MB3_dup10435|chr10:87908730-87909314:-|1.64929933640941|0.024163005575857|6.09|151.0|4|1|sense REV__L1MB3_dup10435|chr10:87908730-87909314:-|1.64929933640941|0.024163005575857|6.09|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 543.7932739257812 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 111.64 1 115.17 114.67 115.67 3.5207 0 0 0 0.38299 1 27411 27411 4.756 0 1 + 41782 25792 26397 26409 47939 47939 0.036346097574551095 SNFPLGLFTF 10 Unmodified _SNFPLGLFTF_ 0 0 0 REV__L1MCa_dup1162|chr3:17457090-17457990:-|1.1027674500542837|0.0077054370634348|7.16|151.0|47|2|anti-sense REV__L1MCa_dup1162|chr3:17457090-17457990:-|1.1027674500542837|0.0077054370634348|7.16|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 571.7988891601562 2 571.797675 1141.5808 0.49388 0.0002824 -0.1391 -7.9534E-05 0.35478 0.00020286 571.7975977740679 67.853 0.58724 71.361 71.141 71.728 3.5083 82 50 2 0 0 0 0.56155 2 15579 15579;15702 2.7352 0.67545 1 138840 + 41783 27181 26398 26410 47940;47941 47940 0.015669136200813227 SNFPLGLFTF 10 Unmodified _SNFPLGLFTF_ 0 0 0 REV__L1MCa_dup1162|chr3:17457090-17457990:-|1.1027674500542837|0.0077054370634348|7.16|151.0|47|2|anti-sense REV__L1MCa_dup1162|chr3:17457090-17457990:-|1.1027674500542837|0.0077054370634348|7.16|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 571.7973022460938 2 571.797675 1141.5808 0.52275 0.00029891 -0.53237 -0.00030441 -0.0096255 -5.5039E-06 571.797295656377 67.811 0.56184 71.319 71.096 71.658 3.5077 79 52 2 0 0 0 0.56155 1 15600 15600 2.7352 0.89096 1 174480 + 41784 27181 26398 26410 47942 47942 0.015669136200813227 SNFQFKECL 9 Unmodified _SNFQFKECL_ 0 0 0 ENSG00000187871|ENST00000340465|GFRAL ENSG00000187871|ENST00000340465|GFRAL ENSG00000187871|ENST00000340465|GFRAL MSMS UPN47_class_I_Rep_3 4 558.279296875 2 558.263142 1114.51173 NaN NaN NaN NaN NaN NaN NaN 37.642 1 40.884 40.384 41.384 3.2414 0 0 0 0.39598 1 7241 7241 1.6526 0.17072 1 41785 5213 26399 26411 47943 47943 -0.04094493671118471 SNGKRALSFPS 11 Unmodified _SNGKRALSFPS_ 0 0 0 REV__L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|240|1|anti-sense REV__L1PA5_dup8159|chr11:28216564-28222701:-|1.1787211238154207|0.1787567602616315|2.72|150.0|240|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.3137817382812 2 582.312012 1162.60947 NaN NaN NaN NaN NaN NaN NaN 53.588 1 56.915 56.415 57.415 3.3266 0 0 0 0.38417 1 12046 12046 1.0715 0.46996 1 + 41786 29801 26400 26412 47944 47944 0.034670312492153244 SNGPVQKGPED 11 Unmodified _SNGPVQKGPED_ 0 0 0 REV__ENSG00000196812|ENST00000340487|ZSCAN16 REV__ENSG00000196812|ENST00000340487|ZSCAN16 MSMS UPN47_class_I_Rep_1 2 564.2721557617188 2 564.27001 1126.52547 NaN NaN NaN NaN NaN NaN NaN 72.922 1 76.302 75.802 76.802 3.3799 0 0 0 0.38417 1 17874 17874 5.4027 0.17204 1 + 41787 21055 26401 26413 47945 47945 -0.032735446383412636 SNGPVQKGPED 11 Unmodified _SNGPVQKGPED_ 0 0 0 REV__ENSG00000196812|ENST00000340487|ZSCAN16 REV__ENSG00000196812|ENST00000340487|ZSCAN16 MSMS UPN47_class_I_Rep_1 2 564.2745361328125 2 564.27001 1126.52547 NaN NaN NaN NaN NaN NaN NaN 73.077 1 76.461 75.961 76.961 3.3836 0 0 0 0.37352 1 17922 17922 7.4771 0.18784 1 + 41788 21055 26401 26413 47946 47946 -0.032735446383412636 SNGPVQKGPED 11 Unmodified _SNGPVQKGPED_ 0 0 0 REV__ENSG00000196812|ENST00000340487|ZSCAN16 REV__ENSG00000196812|ENST00000340487|ZSCAN16 MSMS UPN47_class_I_Rep_3 4 564.272705078125 2 564.27001 1126.52547 NaN NaN NaN NaN NaN NaN NaN 73.045 1 76.272 75.772 76.772 3.2271 0 0 0 0.38417 1 18015 18015 3.5871 0.59182 1 + 41789 21055 26401 26413 47947 47947 -0.032735446383412636 SNHCFNKYRLA 11 Unmodified _SNHCFNKYRLA_ 0 0 0 ENSG00000132950|ENST00000337963|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF;nc|ENSG00000132950|Q9UJ78-5|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 MSMS UPN46_class_I_Rep_3 1 451.5556335449219 3 451.555789 1351.64554 NaN NaN NaN NaN NaN NaN NaN 71.592 1 71.592 71.092 72.092 0 0 0 0 0.38417 1 16502 16502 1.2148 0.588 1 41790 2783 26402 26414 47948 47948 -0.016218348455595333 SNHENLAW 8 Unmodified _SNHENLAW_ 0 0 0 REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|157|3|sense REV__L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|157|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.721435546875 2 485.722498 969.430444 -0.54148 -0.00026301 0.25878 0.0001257 -0.2827 -0.00013731 485.722629376407 26.133 0.76228 29.481 29.236 29.998 3.3478 125 70 2 0 0 0 0.82752 1 3876 3876 2.5775 0 1 96544 + 41791 30723 26403 26415 47949 47949 -0.05549433318856245 SNHLFFAF 8 Unmodified _SNHLFFAF_ 0 0 0 L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|72|1|anti-sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|72|1|anti-sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|72|1|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7430419921875 2 491.742702 981.470852 NaN NaN NaN NaN NaN NaN NaN 39.257 1 42.913 42.413 43.413 3.6557 0 0 0 0.40292 1 6844 6844 6.7232 1.4925 1 41792 12961 26404 26416 47950 47950 -0.020624669284416086 SNHLRIRIELT 11 Unmodified _SNHLRIRIELT_ 0 0 0 REV__L1ME3_dup2179|chr4:1218738-1219050:+|1.8750456327797675|0.4407743447747648|2.09|151.0|23|2|anti-sense REV__L1ME3_dup2179|chr4:1218738-1219050:+|1.8750456327797675|0.4407743447747648|2.09|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 450.88507080078125 3 451.265004 1350.77318 NaN NaN NaN NaN NaN NaN NaN 112.63 1 116.29 115.79 116.79 3.6614 0 0 0 0.38417 1 26762 26762 0.40827 0.24894 1 + 41793 27943 26405 26417 47951 47951 0.11182629020117929 SNHNNTTDRPK 11 Unmodified _SNHNNTTDRPK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|21|3|sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|21|3|sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 642.307861328125 2 642.307989 1282.60143 NaN NaN NaN NaN NaN NaN NaN 94.555 1 98.027 97.527 98.527 3.472 0 0 0 0.38417 1 23300 23300 0 0 1 41794 11618 26406 26418 47952 47952 -0.028571477382229205 SNHSLFPV 8 Unmodified _SNHSLFPV_ 0 0 0 L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|94|3|anti-sense;L1MC3_dup8099|chr10:42607863-42609137:+|1.290225449559906|0.1805649163677801|2.84|151.0|68|1|anti-sense L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|94|3|anti-sense L1MC3_dup8077|chr10:38039523-38040799:-|2.4554027332285084|0.1245364808788448|4.3|151.0|94|3|anti-sense MSMS UPN47_class_I_Rep_1 2 450.7331848144531 2 450.732335 899.450116 NaN NaN NaN NaN NaN NaN NaN 111.49 1 115.06 114.56 115.56 3.572 0 0 0 0.40753 1 27504 27504 0.6015 0 1 41795 11377 26407 26419 47953 47953 -0.0036305730808408043 SNIEKQIYL 9 Unmodified _SNIEKQIYL_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MULTI-MSMS UPN47_class_I_Rep_3 4 554.3060302734375 2 554.305864 1106.59717 0.44295 0.00024553 -0.34691 -0.00019229 0.096046 5.3239E-05 554.3055303748595 69.709 0.74385 72.913 72.675 73.419 3.2044 107 58 2 0 0 0 0.33908 1 17042 17042 11.495 2.7493 1 208980 41796 5769 26408 26420 47954 47954 0.048139947861727705 SNIIRRAT 8 Unmodified _SNIIRRAT_ 0 0 0 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MULTI-MSMS UPN48_class_I_Rep_2 6 465.7775573730469 2 465.777608 929.540663 0.19308 8.9932E-05 -0.21731 -0.00010122 -0.024229 -1.1285E-05 465.77741853204094 85.491 0.6516 89.197 88.901 89.552 3.7058 193 77 3 0 0 0 0.82752 1 20334 20334 6.7232 0 1 515110 + 41797 20349 26409 26421 47955 47955 0.07307411740168845 SNIIRRAT 8 Unmodified _SNIIRRAT_ 0 0 0 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MULTI-MSMS UPN48_class_I_Rep_3 7 465.77764892578125 2 465.777608 929.540663 0.2185 0.00010177 -0.25221 -0.00011748 -0.033712 -1.5702E-05 465.7774159855143 85.455 0.64001 89.204 88.918 89.558 3.7494 182 79 3 0 0 0 0.82752 1 20339 20339 1.8442 0 1 450950 + 41798 20349 26409 26421 47956 47956 0.07307411740168845 SNIIRRAT 8 Unmodified _SNIIRRAT_ 0 0 0 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 465.777608 929.540663 0.22769 0.00010605 -0.31884 -0.00014851 -0.091145 -4.2453E-05 465.7773956049544 89.161 0.56006 89.161 88.899 89.459 0 -0.016272 -9.1326E-05 NaN 6.7232 76 58 2 NaN NaN NaN NaN 0 NaN NaN 0 792220 + 41799 20349 26409 26421 0.07307411740168845 SNIIRRAT 8 Unmodified _SNIIRRAT_ 0 0 0 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 465.777608 929.540663 0.077545 3.6119E-05 -0.12904 -6.0103E-05 -0.051493 -2.3984E-05 465.77744947530596 85.54 0.69711 89.146 88.841 89.538 3.6059 -0.030918 8.5483E-05 NaN 6.7232 148 73 3 NaN NaN NaN NaN 0 NaN NaN 0 519890 + 41800 20349 26409 26421 0.07307411740168845 SNIIRRAT 8 Unmodified _SNIIRRAT_ 0 0 0 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 REV__nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 465.777608 929.540663 0.2185 0.00010177 -0.25221 -0.00011748 -0.033712 -1.5702E-05 465.7774159855143 85.455 0.64001 89.204 88.918 89.558 3.7494 0.027282 -2.9263E-05 NaN 6.7232 182 79 3 NaN NaN NaN NaN 0 NaN NaN 0 450950 + 41801 20349 26409 26421 0.07307411740168845 SNILLNLN 8 Unmodified _SNILLNLN_ 0 0 0 Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|22|3|sense Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|22|3|sense Charlie1a_dup696|chr2:68231390-68231952:-|1.63760711014945|0.0061619288714941|8.05|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 450.7720031738281 2 450.761092 899.507631 NaN NaN NaN NaN NaN NaN NaN 119.25 1 122.91 122.41 123.41 3.6652 0 0 0 0.40738 1 28616 28616 0.79363 0 1 41802 494 26410 26422 47957 47957 0.0538578489745305 SNITQYYY 8 Unmodified _SNITQYYY_ 0 0 0 REV__Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|15|1|sense REV__Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 525.782470703125 2 526.24019 1050.46583 NaN NaN NaN NaN NaN NaN NaN 118.87 1 122.47 121.97 122.97 3.6036 0 0 0 0.40738 1 29513 29513 0.79363 0 1 + 41803 17417 26411 26423 47958 47958 -0.05738815581707968 SNKFDVGFAY 10 Unmodified _SNKFDVGFAY_ 0 0 0 REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|118|2|anti-sense REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_2 3 574.3483276367188 2 574.274564 1146.53457 NaN NaN NaN NaN NaN NaN NaN 51.922 1 55.255 54.755 55.755 3.3332 0 0 0 0.53105 1 11543 11543 3.9444 1.0552 1 + 41804 27300 26412 26424 47959 47959 -0.032831512819939235 SNKFNVKFI 9 Unmodified _SNKFNVKFI_ 0 0 0 REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|13|1|sense REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.810302734375 2 548.811116 1095.60768 0.46533 0.00025538 -0.44107 -0.00024206 0.024259 1.3314E-05 548.8106394929927 64.967 0.72571 68.475 68.175 68.901 3.5077 99 53 3 0 0 0 0.31407 1 14603 14603 13.042 1.4022 1 141460 + 41805 25185 26413 26425 47960 47960 0.0637002223129457 SNLFVFPFY 9 Unmodified _SNLFVFPFY_ 0 0 0 REV__L1MB5_dup669|chr2:26086295-26087138:+|1.3829556251028574|0.0852066555040543|4.02|151.0|63|3|anti-sense REV__L1MB5_dup669|chr2:26086295-26087138:+|1.3829556251028574|0.0852066555040543|4.02|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.284423828125 2 567.286943 1132.55933 NaN NaN NaN NaN NaN NaN NaN 39.689 1 43.356 42.856 43.856 3.6668 0 0 0 0.39518 1 7789 7789 1.8442 0 1 + 41806 26088 26414 26426 47961 47961 -0.001644714086296517 SNLKQKVY 8 Unmodified _SNLKQKVY_ 0 0 0 REV__L1MB8_dup1318|chr2:38327947-38329144:+|1.0915343993512123|0.0239456093572276|5.51|151.0|2|1|sense REV__L1MB8_dup1318|chr2:38327947-38329144:+|1.0915343993512123|0.0239456093572276|5.51|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 490.2820739746094 2 490.282192 978.549831 -0.15443 -7.5715E-05 -0.42245 -0.00020712 -0.57688 -0.00028283 490.28210587639427 21.513 0.25987 21.513 21.392 21.652 0 40 30 2 0 0 0 0.82752 1 2405 2405 3.5965 0 1 43969 + 41807 26366 26415 26427 47962 47962 0.05969760305845284 SNMSHFVFY 9 Unmodified _SNMSHFVFY_ 0 0 0 REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|134|3|anti-sense REV__L1M2_dup6708|chr11:73009569-73011968:-|4.582106336294556|0.0287989642553853|7.31|151.0|134|3|anti-sense MSMS UPN47_class_I_Rep_1 2 565.7871704101562 2 566.250034 1130.48552 NaN NaN NaN NaN NaN NaN NaN 35.521 1 39.197 38.697 39.697 3.6762 0 0 0 0.39518 1 6524 6524 1.8442 0 1 + 41808 24222 26416 26428 47963 47963 -0.074507628425863 SNNFSYQVF 9 Unmodified _SNNFSYQVF_ 0 0 0 nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1;ENST00000400423.6_1_21:43540943-43557727:+|nuORF nc|ENSG00000177398|Q5DID0-3|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 MULTI-MSMS UPN48_class_I_Rep_2 6 553.251708984375 2 553.251089 1104.48762 0.61112 0.0003381 -0.17887 -9.8961E-05 0.43225 0.00023914 553.2509778521053 56.12 0.67786 59.653 59.284 59.962 3.5333 103 53 3 0 0 0 0.43982 1 11969 11969 5.7319 0 1 250090 41809 4790 26417 26429 47964 47964 -0.06044010833147695 SNNFTIWIP 9 Unmodified _SNNFTIWIP_ 0 0 0 L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|47|1|anti-sense L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|47|1|anti-sense L1MEg_dup56|chr1:6850511-6851567:+|1.741586553685197|0.0564292407113045|4.95|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 546.2813110351562 2 546.279649 1090.54475 NaN NaN NaN NaN NaN NaN NaN 34.046 1 37.745 37.245 38.245 3.6983 0 0 0 0.39518 1 6075 6075 1.8442 0.19162 1 41810 13402 26418 26430 47965 47965 0.003094564432331026 SNNSLPRL 8 Unmodified _SNNSLPRL_ 0 0 0 REV__L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|38|2|anti-sense REV__L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|38|2|anti-sense MSMS UPN48_class_I_Rep_1 5 450.747802734375 2 450.748516 899.482479 NaN NaN NaN NaN NaN NaN NaN 47.682 1 51.204 50.704 51.704 3.5219 0 0 0 0.40157 1 9450 9450 7.2892 0 1 + 41811 25665 26419 26431 47966 47966 0.028717300948869706 SNNSRWLL 8 Unmodified _SNNSRWLL_ 0 0 0 REV__ENST00000589797.5_1_17:40732375-40732486:-|nuORF REV__ENST00000589797.5_1_17:40732375-40732486:-|nuORF MSMS UPN48_class_I_Rep_2 6 495.2620849609375 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.2 1 103.96 103.46 104.46 3.7575 0 0 0 0.40625 1 23802 23802 2.3027 0 1 + 41812 23159 26420 26432 47967 47967 0.014314189862375315 SNNSRWLL 8 Unmodified _SNNSRWLL_ 0 0 0 REV__ENST00000589797.5_1_17:40732375-40732486:-|nuORF REV__ENST00000589797.5_1_17:40732375-40732486:-|nuORF MSMS UPN48_class_I_Rep_2 6 495.26116943359375 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 100.64 1 104.38 103.88 104.88 3.7417 0 0 0 0.40625 1 23897 23897 2.3027 0 1 + 41813 23159 26420 26432 47968 47968 0.014314189862375315 SNNTYNHFC 9 Unmodified _SNNTYNHFC_ 0 0 0 REV__L1M5_dup22017|chr6:166983737-166984209:+|1.3351671379733705|0.1574498761559262|3.08|149.0|28|2|anti-sense REV__L1M5_dup22017|chr6:166983737-166984209:+|1.3351671379733705|0.1574498761559262|3.08|149.0|28|2|anti-sense MSMS UPN47_class_I_Rep_2 3 549.8026733398438 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 100.86 1 104.37 103.87 104.87 3.5063 0 0 0 0.39518 1 24642 24642 1.8442 0 1 + 41814 24635 26421 26433 47969 47969 -0.12637998404511563 SNPADLFHWLP 11 Unmodified _SNPADLFHWLP_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MSMS UPN48_class_I_Rep_2 6 432.8851623535156 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 92.756 1 96.526 96.026 97.026 3.77 0 0 0 0.38417 1 22068 22068 0.50596 0.23694 1 41815 2634 26422 26434 47970 47970 -0.006117980909493781 SNPDTPLLI 9 Unmodified _SNPDTPLLI_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|36|1|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|36|1|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|36|1|sense MSMS UPN46_class_I_Rep_3 1 485.1177062988281 2 485.266207 968.517862 NaN NaN NaN NaN NaN NaN NaN 62.983 1 62.983 62.483 63.483 0 0 0 0 0.39428 1 14117 14117 2.0598 0 1 41816 13851 26423 26435 47971 47971 0.032343478320512986 SNPIYHHFF 9 Unmodified _SNPIYHHFF_ 0 0 0 REV__MER61-int_dup350|chr4:143427198-143428772:-|1.0314656270663602|0.1195521742660489|3.11|151.0|75|2|anti-sense REV__MER61-int_dup350|chr4:143427198-143428772:-|1.0314656270663602|0.1195521742660489|3.11|151.0|75|2|anti-sense MSMS UPN47_class_I_Rep_2 3 581.277587890625 2 581.277441 1160.54033 NaN NaN NaN NaN NaN NaN NaN 71.645 1 74.935 74.435 75.435 3.2899 0 0 0 0.39326 1 17523 17523 2.3027 0.4585 1 + 41817 31496 26424 26436 47972 47972 -0.03352007979674454 SNPLRGEDEIR 11 Unmodified _SNPLRGEDEIR_ 0 0 0 REV__L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|22|2|sense REV__L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|22|2|sense MSMS UPN48_class_I_Rep_3 7 643.32958984375 2 643.32839 1284.64223 NaN NaN NaN NaN NaN NaN NaN 52.979 1 56.563 56.063 57.063 3.5836 0 0 0 0.38417 1 10995 10995 2.4985 0.41248 1 + 41818 29326 26425 26437 47973 47973 0.011291935814142562 SNPTFPFHIA 10 Unmodified _SNPTFPFHIA_ 0 0 0 THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|50|1|anti-sense THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|50|1|anti-sense THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_1 2 565.78466796875 2 565.785099 1129.55564 NaN NaN NaN NaN NaN NaN NaN 113.11 1 116.68 116.18 117.18 3.572 0 0 0 0.53105 1 27901 27901 1.4819 0 1 41819 32968 26426 26438 47974 47974 -0.0039514118248007435 SNQHIDPVHI 10 Unmodified _SNQHIDPVHI_ 0 0 0 L1MD3_dup772|chr2:207588103-207589082:-|1.8668051338261265|0.1582372477398999|3.56|151.0|56|2|anti-sense L1MD3_dup772|chr2:207588103-207589082:-|1.8668051338261265|0.1582372477398999|3.56|151.0|56|2|anti-sense L1MD3_dup772|chr2:207588103-207589082:-|1.8668051338261265|0.1582372477398999|3.56|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_3 4 580.7698974609375 2 580.296362 1158.57817 NaN NaN NaN NaN NaN NaN NaN 85.936 1 89.308 88.808 89.808 3.3716 0 0 0 0.53105 1 21536 21536 2.4985 0.43874 1 41820 12080 26427 26439 47975 47975 0.005224582151640789 SNQKLKKKKK 10 Unmodified _SNQKLKKKKK_ 0 0 0 ENST00000367866.6_1_1:167385133-167385376:+|nuORF ENST00000367866.6_1_1:167385133-167385376:+|nuORF ENST00000367866.6_1_1:167385133-167385376:+|nuORF MSMS UPN48_class_I_Rep_2 6 615.6769409179688 2 615.406247 1228.79794 NaN NaN NaN NaN NaN NaN NaN 118.33 1 121.99 121.49 122.49 3.6627 0 0 0 0.53105 1 28371 28371 0.45834 0.057624 1 41821 6356 26428 26440 47976 47976 0.19269308893490233 SNQQRMCWR 9 Unmodified _SNQQRMCWR_ 0 0 0 REV__ENST00000398621.3_1_10:81652047-81652404:-|nuORF REV__ENST00000398621.3_1_10:81652047-81652404:-|nuORF MSMS UPN48_class_I_Rep_3 7 604.2948608398438 2 604.774216 1207.53388 NaN NaN NaN NaN NaN NaN NaN 31.948 1 35.65 35.15 36.15 3.7015 0 0 0 0.4007 1 4792 4792 0.52476 0 1 + 41822 22141 26429 26441 47977 47977 -0.061585924743440046 SNQVRIAIK 9 Unmodified _SNQVRIAIK_ 0 0 0 ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|6|intron;MAP3K5|p.A1077Gfs*2|1|0.07|ENSG00000197442|chr6:136583736-136583737|-/C|frameshift_variant;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|7|intron;ENSG00000180815|ENST00000338883|MAP3K15;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|15|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|14|intron;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|4|intron;ENSG00000197442.10,MAP3K5,chr6,-,I26.1,136567875,136580300|65|11.83|2|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|6|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|7|intron;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|6|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|12|intron;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|4|intron;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|1|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|5|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|3|intron;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|5|intron ENSG00000197442|ENST00000359015|MAP3K5 ENSG00000197442|ENST00000359015|MAP3K5 MSMS UPN48_class_I_Rep_2 6 514.8131103515625 2 514.81419 1027.61383 NaN NaN NaN NaN NaN NaN NaN 58.429 1 61.928 61.428 62.428 3.4987 0 0 0 0.39518 1 12725 12725 1.8442 0 1 41823 5371 26430 26442 47978 47978 0.1011254046279646 SNQVSAPEYV 10 Unmodified _SNQVSAPEYV_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MSMS UPN47_class_I_Rep_1 2 546.8052368164062 2 547.261653 1092.50875 NaN NaN NaN NaN NaN NaN NaN 55.056 1 58.557 58.057 59.057 3.5014 0 0 0 0.53105 1 12467 12467 1.4819 0.68827 1 41824 998 26431 26443 47979 47979 -0.03380045524295383 SNRDQIDKY 9 Unmodified _SNRDQIDKY_ 0 0 0 REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|57|2|sense REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.7779541015625 2 569.778002 1137.54145 -0.12817 -7.303E-05 -0.31146 -0.00017746 -0.43963 -0.00025049 569.7777757148556 16.339 0.60258 19.861 19.697 20.3 3.5224 162 69 3 0 0 0 0.49187 2 1002 1002;1092 1.4819 0 1 99365 + 41825 29168 26432 26444 47980;47981 47980 -0.02181838401429559 SNRDQIDKY 9 Unmodified _SNRDQIDKY_ 0 0 0 REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|57|2|sense REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.7774047851562 2 569.778002 1137.54145 0.048095 2.7404E-05 -0.6737 -0.00038386 -0.62561 -0.00035646 569.777673365823 16.594 0.74193 19.981 19.746 20.488 3.3864 179 86 3 0 0 0 0.36392 3 1096 1069;1096;1126 10.074 0 1 54489 + 41826 29168 26432 26444 47982;47983;47984 47983 -0.02181838401429559 SNRDQIDKY 9 Unmodified _SNRDQIDKY_ 0 0 0 REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|57|2|sense REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|57|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.7777709960938 2 569.778002 1137.54145 -0.38523 -0.00021949 -0.17354 -9.8882E-05 -0.55877 -0.00031838 569.777888539315 16.751 0.95618 20.113 19.825 20.782 3.3619 151 108 2 0 0 0 0.43153 2 1121 1048;1121 6.2058 0 1 57850 + 41827 29168 26432 26444 47985;47986 47986 -0.02181838401429559 SNRGSQRF 8 Unmodified _SNRGSQRF_ 0 0 0 L1MB8_dup13571|chr16:12713779-12715313:-|1.0051527069669488|0.0082158234073998|6.93|151.0|84|2|anti-sense L1MB8_dup13571|chr16:12713779-12715313:-|1.0051527069669488|0.0082158234073998|6.93|151.0|84|2|anti-sense L1MB8_dup13571|chr16:12713779-12715313:-|1.0051527069669488|0.0082158234073998|6.93|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_3 4 476.23095703125 2 476.24139 950.468226 NaN NaN NaN NaN NaN NaN NaN 28.451 1 31.785 31.285 32.285 3.3337 0 0 0 0.40625 1 4462 4462 2.3027 0 1 41828 10940 26433 26445 47987 47987 -0.008989223333855989 SNRHEFGRLL 10 Unmodified _SNRHEFGRLL_ 0 0 0 ENST00000478436.1_1_3:145794517-145794673:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.G602Vfs*12|1|0.12|ENSG00000152952|chr3:146071404-146071404|C/-|frameshift_variant;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 ENST00000478436.1_1_3:145794517-145794673:-|nuORF ENST00000478436.1_1_3:145794517-145794673:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 615.3325805664062 2 614.830903 1227.64725 0.37289 0.00022927 -0.96918 -0.00059588 -0.59629 -0.00036662 614.83024047167 66.305 0.63438 69.564 69.315 69.949 3.2588 53 40 2 0 0 0 0.53794 2 15937 15937;15979 7.1017 0.90987 1 129750 41829 3634 26434 26446 47988;47989 47988 0.04253542234710039 SNRHEFGRLL 10 Unmodified _SNRHEFGRLL_ 0 0 0 ENST00000478436.1_1_3:145794517-145794673:-|nuORF;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.G602Vfs*12|1|0.12|ENSG00000152952|chr3:146071404-146071404|C/-|frameshift_variant;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 ENST00000478436.1_1_3:145794517-145794673:-|nuORF ENST00000478436.1_1_3:145794517-145794673:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 615.3314819335938 2 614.830903 1227.64725 0.4427 0.00027219 -1.1569 -0.00071132 -0.71424 -0.00043914 615.3316882847215 66.352 0.55963 69.537 69.222 69.782 3.1853 71 42 2 0 0 0 0.53414 1 16026 16026 7.609 0.97858 1 171500 41830 3634 26434 26446 47990 47990 0.04253542234710039 SNRHPQTLA 9 Unmodified _SNRHPQTLA_ 0 0 0 REV__PRIMA4-int_dup59|chr2:168503323-168504128:-|1.035333695815164|0.0082305049779754|6.97|151.0|22|3|sense REV__PRIMA4-int_dup59|chr2:168503323-168504128:-|1.035333695815164|0.0082305049779754|6.97|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 512.2702026367188 2 512.270147 1022.52574 NaN NaN NaN NaN NaN NaN NaN 41.055 1 44.727 44.227 45.227 3.6719 0 0 0 0.39518 1 8204 8204 1.8442 0 1 + 41831 32170 26435 26447 47991 47991 0.01537919872191651 SNRKKLVT 8 Unmodified _SNRKKLVT_ 0 0 0 REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|57|2|sense REV__L1PA6_dup1049|chr3:61100061-61105394:-|1.7667712859528613|0.023469351675922|6.23|151.0|57|2|sense MSMS UPN47_class_I_Rep_2 3 473.31036376953125 2 473.295633 944.576714 NaN NaN NaN NaN NaN NaN NaN 45.065 1 48.421 47.921 48.921 3.3556 0 0 0 0.40643 1 9460 9460 2.0598 0 1 + 41832 29833 26436 26448 47992 47992 0.1022086891704248 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 20.007 1 23.403 22.903 23.903 3.3963 0 0 0 0.40746 1 1998 1998 0.69038 0 1 41833 12140 26437 26449 47993 47993 0.12232861670997863 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 485.8120422363281 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 22.38 1 25.804 25.304 26.304 3.4241 0 0 0 0.40753 1 2647 2647 0.6015 0 1 41834 12140 26437 26449 47994 47994 0.12232861670997863 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 485.8109436035156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 42.452 1 45.813 45.313 46.313 3.3611 0 0 0 0.40746 1 8658 8658 0.69038 0 1 41835 12140 26437 26449 47995 47995 0.12232861670997863 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 485.81146240234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 80.875 1 84.245 83.745 84.745 3.3694 0 0 0 0.40746 1 20136 20136 0.69038 0 1 41836 12140 26437 26449 47996 47996 0.12232861670997863 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MSMS UPN47_class_I_Rep_2 3 485.8115539550781 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 102.44 1 105.95 105.45 106.45 3.5151 0 0 0 0.40604 1 24940 24940 2.5775 0 1 41837 12140 26437 26449 47997 47997 0.12232861670997863 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.8119201660156 2 485.811451 969.608348 0.14832 7.2056E-05 1.2154 0.00059047 1.3638 0.00066253 485.8115918514628 70.68 0.14601 73.892 73.832 73.978 3.2113 16 11 2 0 0 0 0.82752 1 17293 17293 0.69038 0 1 213770 41838 12140 26437 26449 47998 47998 0.12232861670997863 SNRKLPKK 8 Unmodified _SNRKLPKK_ 0 0 0 L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense L1MDa_dup6089|chr17:61116297-61117310:-|1.1200830802956758|0.1097219821353109|3.35|151.0|36|3|sense MSMS UPN47_class_I_Rep_3 4 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.25 1 75.477 74.977 75.977 3.2271 0 0 0 0.40746 1 17775 17775 0.69038 0 1 41839 12140 26437 26449 47999 47999 0.12232861670997863 SNRLRLAL 8 Unmodified _SNRLRLAL_ 0 0 0 nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 MSMS UPN47_class_I_Rep_3 4 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 64.043 1 67.217 66.717 67.717 3.1741 0 0 0 0.40604 1 15289 15289 2.5775 0 1 41840 4023 26438 26450 48000 48000 0.10392288636876401 SNRNPGEHR 9 Unmodified _SNRNPGEHR_ 0 0 0 L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|12|3|sense;L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|51|3|sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|12|3|sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|12|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 533.7625732421875 2 533.760478 1065.5064 0.13555 7.235E-05 2.2148 0.0011822 2.3504 0.0012545 533.7615645252697 32.583 0.16478 32.583 32.526 32.691 0 16 11 2 0 0 0 0.47197 1 5587 5587 3.5965 1.019 1 89513 41841 8736 26439 26451 48001 48001 -0.0237303641872586 SNRNPGEHR 9 Unmodified _SNRNPGEHR_ 0 0 0 L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|12|3|sense;L1M2a_dup393|chr14:67171621-67174090:+|1.2862768995550742|0.3867536181537881|1.73|149.0|51|3|sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|12|3|sense L1MA5_dup19|chr1:36045843-36046409:+|1.9839520650165572|0.0800583715385975|4.63|151.0|12|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 533.760478 1065.5064 -0.064189 -3.4261E-05 3.2473 0.0017333 3.1831 0.001699 533.762321886951 28.802 0.16572 32.3 32.26 32.425 3.4986 -0.14122 0.00094672 NaN 3.5965 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 25517 41842 8736 26439 26451 -0.0237303641872586 SNRPIKNE 8 Unmodified _SNRPIKNE_ 0 0 0 REV__L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|136|3|sense REV__L1PA3_dup6383|chrX:56075958-56081346:-|1.0693674233678694|0.0712418882408655|3.91|150.0|136|3|sense MSMS UPN48_class_I_Rep_3 7 479.2701416015625 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 33.949 1 37.629 37.129 38.129 3.6797 0 0 0 0.40738 1 5342 5342 0.79363 0 1 + 41843 28839 26440 26452 48002 48002 0.023951151236133228 SNRRFQRK 8 Unmodified _SNRRFQRK_ 0 0 0 nc|ENSG00000181555|Q9BYW2-3|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;ENSG00000181555.21,SETD2,chr3,-,I12.1,47086315,47088112|24|7.71|2|intron;ENSG00000181555.21,SETD2,chr3,-,I12.1,47086315,47088112|24|7.71|1|intron;SETD2|p.K2011*|1|0.5|ENSG00000181555|chr3:47083749-47083750|-/TA|frameshift_variant;ENSG00000181555|ENST00000409792|SETD2 nc|ENSG00000181555|Q9BYW2-3|SETD2 nc|ENSG00000181555|Q9BYW2-3|SETD2 MSMS UPN47_class_I_Rep_2 3 546.2833251953125 2 546.312681 1090.61081 NaN NaN NaN NaN NaN NaN NaN 36.882 1 40.281 39.781 40.781 3.3988 0 0 0 0.40753 1 6970 6970 0.6015 0 1 41844 4920 26441 26453 48003 48003 0.06912710128653998 SNRRRPLV 8 Unmodified _SNRRRPLV_ 0 0 0 REV__PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|12|2|sense REV__PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 499.305908203125 2 499.304324 996.594095 NaN NaN NaN NaN NaN NaN NaN 58.331 1 61.753 61.253 62.253 3.4222 0 0 0 0.40625 1 13461 13461 2.3027 0 1 + 41845 32148 26442 26454 48004 48004 0.09566209242700552 SNRRRPLV 8 Unmodified _SNRRRPLV_ 0 0 0 REV__PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|12|2|sense REV__PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|12|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.3056335449219 2 499.304324 996.594095 0.12958 6.4698E-05 2.7745 0.0013853 2.9041 0.00145 499.3056055107725 58.851 0.22837 62.016 61.873 62.102 3.1658 15 12 2 0 0 0 0.82752 1 13720 13720 4.3292 4.3292 1 37335 + 41846 32148 26442 26454 48005 48005 0.09566209242700552 SNRYKASPVF 10 Unmodified _SNRYKASPVF_ 0 0 0 ENST00000388942.7_1_15:76448950-76463338:+|nuORF ENST00000388942.7_1_15:76448950-76463338:+|nuORF ENST00000388942.7_1_15:76448950-76463338:+|nuORF MSMS UPN48_class_I_Rep_3 7 584.80859375 2 584.809105 1167.60366 NaN NaN NaN NaN NaN NaN NaN 62.333 1 65.844 65.344 66.344 3.5104 0 0 0 0.53105 1 13848 13848 2.9952 0.93549 1 41847 6507 26443 26455 48006 48006 0.026559327375707653 SNSIHILFK 9 Unmodified _SNSIHILFK_ 0 0 0 L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|13|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|13|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 529.8060913085938 2 529.803291 1057.59203 NaN NaN NaN NaN NaN NaN NaN 22.415 1 26.058 25.558 26.558 3.6432 0 0 0 0.39518 1 2286 2286 1.8442 0 1 41848 9054 26444 26456 48007 48007 0.06553735714260256 SNSMYIGKGPF 11 Unmodified _SNSMYIGKGPF_ 0 0 0 ENST00000519594.5_1_5:169697651-169724717:-|nuORF ENST00000519594.5_1_5:169697651-169724717:-|nuORF ENST00000519594.5_1_5:169697651-169724717:-|nuORF MSMS UPN48_class_I_Rep_1 5 600.790771484375 2 600.789524 1199.56449 NaN NaN NaN NaN NaN NaN NaN 54.383 1 57.897 57.397 58.397 3.5143 0 0 0 0.38417 1 11509 11509 1.0715 0.27783 1 41849 7219 26445 26457 48008 48008 -0.02730535608293394 SNSYQDLSKC 10 Unmodified _SNSYQDLSKC_ 0 0 0 REV__MER41-int_dup422|chr4:139711796-139713093:-|2.729023724985284|0.1457963923232912|4.23|151.0|12|1|sense REV__MER41-int_dup422|chr4:139711796-139713093:-|2.729023724985284|0.1457963923232912|4.23|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 572.7511596679688 2 572.750595 1143.48664 NaN NaN NaN NaN NaN NaN NaN 67.667 1 67.667 67.167 68.167 0 0 0 0 0.53105 1 15412 15412 1.1933 0.39971 1 + 41850 31293 26446 26458 48009 48009 -0.0793659326436682 SNTLARTLR 9 Unmodified _SNTLARTLR_ 0 0 0 REV__ENST00000394964.3_1_14:63416779-63568536:-|nuORF REV__ENST00000394964.3_1_14:63416779-63568536:-|nuORF MSMS UPN46_class_I_Rep_3 1 516.3009033203125 2 516.301447 1030.58834 NaN NaN NaN NaN NaN NaN NaN 13.04 1 13.04 12.54 13.54 0 0 0 0 0.38073 1 281 281 5.2969 0 1 + 41851 19328 26447 26459 48010 48010 0.07427065940350985 SNTYPFAQPKQ 11 Unmodified _SNTYPFAQPKQ_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|55|3|sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|55|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 640.3936767578125 2 640.817127 1279.6197 0.54595 0.00034985 -0.072406 -4.6399E-05 0.47354 0.00030345 640.8169990631299 52.706 0.44834 56.316 56.121 56.569 3.6098 46 28 2 0 0 0 0.67264 1 10923 10923 1.1933 0 1 112770 + 41852 28932 26448 26460 48011 48011 -0.008924058161937864 SNVEVFHFY 9 Unmodified _SNVEVFHFY_ 0 0 0 L1PB1_dup11367|chr15:56935481-56937363:-|3.06616764220481|0.0203702731347322|7.23|151.0|71|1|anti-sense L1PB1_dup11367|chr15:56935481-56937363:-|3.06616764220481|0.0203702731347322|7.23|151.0|71|1|anti-sense L1PB1_dup11367|chr15:56935481-56937363:-|3.06616764220481|0.0203702731347322|7.23|151.0|71|1|anti-sense MSMS UPN47_class_I_Rep_2 3 571.2704467773438 2 571.269281 1140.52401 NaN NaN NaN NaN NaN NaN NaN 67.538 1 70.802 70.302 71.302 3.2636 0 0 0 0.31276 1 16295 16295 10.074 0 1 41853 15020 26449 26461 48012 48012 -0.04063133936415397 SNVFPFPPLA 10 Unmodified _SNVFPFPPLA_ 0 0 0 ENST00000552699.5_1_12:50157076-50157310:+|nuORF ENST00000552699.5_1_12:50157076-50157310:+|nuORF ENST00000552699.5_1_12:50157076-50157310:+|nuORF MSMS UPN47_class_I_Rep_1 2 544.7902221679688 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 53.738 1 57.265 56.765 57.765 3.5278 0 0 0 0.53105 1 12064 12064 8.1555 2.9249 1 41854 7408 26450 26462 48013 48013 0.0299493096565584 SNVWIDTFYYF 11 Unmodified _SNVWIDTFYYF_ 0 0 0 L1MEd_dup15831|chr12:11155890-11156666:-|1.3655621841395296|0.0457595866592976|4.9|151.0|54|2|anti-sense L1MEd_dup15831|chr12:11155890-11156666:-|1.3655621841395296|0.0457595866592976|4.9|151.0|54|2|anti-sense L1MEd_dup15831|chr12:11155890-11156666:-|1.3655621841395296|0.0457595866592976|4.9|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.5583801269531 3 485.559082 1453.65542 -0.28372 -0.00013776 -0.65665 -0.00031884 -0.94036 -0.0004566 485.55877883897034 36.8 0.70451 40.47 40.185 40.89 3.6692 83 60 2 0 0 0 0.66974 2 6939 6889;6939 1.4551 1.4551 1 192990 41855 13179 26451 26463 48014;48015 48015 -0.05326368359214939 SNVWIDTFYYF 11 Unmodified _SNVWIDTFYYF_ 0 0 0 L1MEd_dup15831|chr12:11155890-11156666:-|1.3655621841395296|0.0457595866592976|4.9|151.0|54|2|anti-sense L1MEd_dup15831|chr12:11155890-11156666:-|1.3655621841395296|0.0457595866592976|4.9|151.0|54|2|anti-sense L1MEd_dup15831|chr12:11155890-11156666:-|1.3655621841395296|0.0457595866592976|4.9|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.5581359863281 3 485.559082 1453.65542 -0.37447 -0.00018183 -0.58577 -0.00028442 -0.96024 -0.00046625 485.55877913891095 37.241 0.63462 40.488 40.251 40.886 3.247 89 46 3 0 0 0 0.67113 1 7160 7160 1.3296 0.82369 1 96824 41856 13179 26451 26463 48016 48016 -0.05326368359214939 SNWKRVMK 8 Unmodified _SNWKRVMK_ 0 0 0 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 MSMS UPN47_class_I_Rep_1 2 524.7884521484375 2 524.789661 1047.56477 NaN NaN NaN NaN NaN NaN NaN 74.607 1 78.001 77.501 78.501 3.3937 0 0 0 0.40643 1 18370 18370 2.0598 0.40713 1 41857 4405 26452 26464 48017 48017 0.042889289022014054 SNYIFFLYL 9 Unmodified _SNYIFFLYL_ 0 0 0 L1M2_dup939|chr2:111331698-111332908:-|2.128135569995029|0.0394738481623993|5.75|151.0|70|2|anti-sense L1M2_dup939|chr2:111331698-111332908:-|2.128135569995029|0.0394738481623993|5.75|151.0|70|2|anti-sense L1M2_dup939|chr2:111331698-111332908:-|2.128135569995029|0.0394738481623993|5.75|151.0|70|2|anti-sense MSMS UPN46_class_I_Rep_3 1 590.718505859375 2 590.307875 1178.6012 NaN NaN NaN NaN NaN NaN NaN 19.147 1 19.147 18.647 19.647 0 0 0 0 0.40038 1 1781 1781 0.6015 0 1 41858 8720 26453 26465 48018 48018 0.019040842799086022 SNYISNVL 8 Unmodified _SNYISNVL_ 0 0 0 REV__L1ME3_dup826|chr2:28770273-28770874:+|2.0373467420383093|0.0635212796322219|5.0|151.0|36|2|anti-sense REV__L1ME3_dup826|chr2:28770273-28770874:+|2.0373467420383093|0.0635212796322219|5.0|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 455.23736572265625 2 455.23745 908.460347 -0.50059 -0.00022789 0.18132 8.2543E-05 -0.31927 -0.00014535 455.2374362690604 35.437 0.67593 38.848 38.579 39.255 3.4114 91 41 3 0 0 0 0.82752 1 6600 6600 3.5965 0 1 231650 + 41859 27970 26454 26466 48019 48019 0.002455056264693667 SNYSDIPDVK 10 Unmodified _SNYSDIPDVK_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MULTI-MSMS UPN47_class_I_Rep_1 2 569.2742919921875 2 569.274761 1136.53497 0.014856 8.4571E-06 0.36407 0.00020726 0.37892 0.00021571 569.2747315986541 42.534 0.519 46.221 45.947 46.466 3.6875 46 36 2 0 0 0 0.56374 1 8673 8673 1.1933 1.1933 1 57994 41860 5350 26455 26467 48020 48020 -0.02783776352816858 SNYTKPKKRR 10 Unmodified _SNYTKPKKRR_ 0 0 0 L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|18|1|sense L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|18|1|sense L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 639.3740844726562 2 639.375478 1276.7364 NaN NaN NaN NaN NaN NaN NaN 117.86 1 117.86 117.36 118.36 0 0 0 0 0.53105 1 29232 29232 0.45834 0 1 41861 11653 26456 26468 48021 48021 0.10910377194204557 SNYYCSFS 8 Unmodified _SNYYCSFS_ 0 0 0 HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|156|2|anti-sense HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|156|2|anti-sense HAL1M8_dup1580|chr13:109486403-109488857:-|1.287728345406843|0.0249316666404272|5.69|137.0|156|2|anti-sense MSMS UPN46_class_I_Rep_3 1 485.7974853515625 2 485.684193 969.353833 NaN NaN NaN NaN NaN NaN NaN 73.107 1 73.107 72.607 73.607 0 0 0 0 0.40746 1 16933 16933 0.69038 0 1 41862 7935 26457 26469 48022 48022 -0.1320699293036114 SPAAAPHLSG 10 Unmodified _SPAAAPHLSG_ 0 0 0 REV__SVA_B_dup791|chr22:42971094-42972512:+|1.6141395069703688|0.0600044595984878|4.75|151.0|24|3|sense REV__SVA_B_dup791|chr22:42971094-42972512:+|1.6141395069703688|0.0600044595984878|4.75|151.0|24|3|sense MSMS UPN48_class_I_Rep_3 7 454.2350769042969 2 454.235242 906.45593 NaN NaN NaN NaN NaN NaN NaN 21 1 24.667 24.167 25.167 3.6667 0 0 0 0.53105 1 1899 1899 5.7319 0.43497 1 + 41863 32189 26458 26470 48023 48023 -0.0010395879643283479 SPAPAPSPVL 10 Unmodified _SPAPAPSPVL_ 0 0 0 ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|2|intron;ENSG00000187605.15,TET3,chr2,+,I9.1,74090048,74092901|83|8.22|1|intron;ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|1|intron;ENSG00000187605.15,TET3,chr2,+,I11.1,74093667,74099275|76|9.65|3|intron;nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;ENST00000475405.2_1_2:74274397-74300767:+|nuORF;ENSG00000187605.15,TET3,chr2,+,I7.1,74080592,74087829|68|8.71|4|intron;nc|ENSG00000187605|O43151-3|TET3;ENSG00000187605.15,TET3,chr2,+,I7.1,74080592,74087829|68|8.71|2|intron;ENSG00000187605.15,TET3,chr2,+,I7.1,74080592,74087829|68|8.71|1|intron ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|2|intron ENSG00000187605.15,TET3,chr2,+,I8.1,74088039,74089896|96|8.73|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 468.262939453125 2 468.263468 934.512382 -0.56519 -0.00026466 0.039488 1.8491E-05 -0.52571 -0.00024617 468.2634521749183 37.185 0.56939 40.432 40.2 40.77 3.247 67 42 2 0 0 0 0.56078 1 7142 7142 3.2813 0.97858 1 108820 41864 5194 26459 26471 48024 48024 0.04250669040231969 SPAPLVSNK 9 Unmodified _SPAPLVSNK_ 0 0 0 Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|66|1|anti-sense Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|66|1|anti-sense Tigger1_dup7050|chr9:95946629-95948369:+|2.7135181209250177|0.1429933594689743|4.25|151.0|66|1|anti-sense MSMS UPN48_class_I_Rep_3 7 456.7599792480469 2 456.761092 911.507631 NaN NaN NaN NaN NaN NaN NaN 116.47 1 120.1 119.6 120.6 3.6312 0 0 0 0.4007 1 27718 27718 0.52476 0 1 41865 33169 26460 26472 48025 48025 0.04833784897471105 SPAPVEKIPL 10 Unmodified _SPAPVEKIPL_ 0 0 0 ENST00000369563.3_1_1:114448044-114448212:+|nuORF ENST00000369563.3_1_1:114448044-114448212:+|nuORF ENST00000369563.3_1_1:114448044-114448212:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 525.8133544921875 2 525.813325 1049.6121 0.1744 9.1701E-05 -0.2428 -0.00012767 -0.068407 -3.5969E-05 525.8131493802705 51.684 0.54617 55.018 54.824 55.371 3.3332 43 27 2 0 0 0 0.56078 1 11493 11493 3.2813 0 1 65152 41866 6374 26461 26473 48026 48026 0.08927486654192762 SPCHPCHATMF 11 Unmodified _SPCHPCHATMF_ 0 0 0 L1MA3_dup1784|chr3:142082484-142084916:+|2.7962772043068185|0.0196952889107618|7.15|151.0|74|1|anti-sense L1MA3_dup1784|chr3:142082484-142084916:+|2.7962772043068185|0.0196952889107618|7.15|151.0|74|1|anti-sense L1MA3_dup1784|chr3:142082484-142084916:+|2.7962772043068185|0.0196952889107618|7.15|151.0|74|1|anti-sense MSMS UPN48_class_I_Rep_1 5 615.74560546875 2 615.746279 1229.478 NaN NaN NaN NaN NaN NaN NaN 25.938 1 29.504 29.004 30.004 3.5667 0 0 0 0.38417 1 3101 3101 1.3295 0 1 41867 9487 26462 26474 48027 48027 -0.12755561706217122 SPCLCPEWYC 10 Unmodified _SPCLCPEWYC_ 0 0 0 L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|234|2|anti-sense;L1PA7_dup12097|chr17:31119241-31120721:-|1.0648980385685625|0.0261460751412192|5.35|151.0|72|2|anti-sense;L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|260|2|anti-sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|312|3|anti-sense;L1PA4_dup98|chr1:41176265-41182362:+|10.693674233678694|0.2607163786058962|5.36|151.0|247|2|anti-sense;L1PA4_dup9403|chr12:29323062-29328907:+|6.270396683513843|0.4933265868320131|3.67|151.0|301|3|anti-sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|257|2|anti-sense L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|234|2|anti-sense L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|234|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 601.2308349609375 2 600.729763 1199.44497 0.4302 0.00025843 0.12685 7.6204E-05 0.55705 0.00033464 600.7296591252224 79.107 0.39768 82.553 82.335 82.733 3.4456 40 31 2 0 0 0 0.56309 1 19740 19740 1.6526 0 1 92857 41868 14336 26463 26475 48028 48028 -0.14677188548876074 SPDFTTWSCA 10 Unmodified _SPDFTTWSCA_ 0 0 0 ENSG00000103326|ENST00000219611|CAPN15;nc|ENSG00000103326|O75808-2|CAPN15 ENSG00000103326|ENST00000219611|CAPN15 ENSG00000103326|ENST00000219611|CAPN15 MSMS UPN48_class_I_Rep_1 5 557.7304077148438 2 557.729132 1113.44371 NaN NaN NaN NaN NaN NaN NaN 114.06 1 117.69 117.19 118.19 3.6301 0 0 0 0.53105 1 27722 27722 1.6526 0.85899 1 41869 1654 26464 26476 48029 48029 -0.10847363321772718 SPDQDDEEGI 10 Unmodified _SPDQDDEEGI_ 0 0 0 ENSG00000187672|ENST00000288221|ERC2 ENSG00000187672|ENST00000288221|ERC2 ENSG00000187672|ENST00000288221|ERC2 MSMS UPN46_class_I_Rep_3 1 552.7203979492188 2 552.720015 1103.42548 NaN NaN NaN NaN NaN NaN NaN 116.61 1 116.61 116.11 117.11 0 0 0 0 0.53105 1 28872 28872 3.2813 1.2216 1 41870 5200 26465 26477 48030 48030 -0.12209826762796183 SPEENVQSNK 10 Unmodified _SPEENVQSNK_ 0 0 0 nc|ENSG00000090905|Q8NDV7-6|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;ENST00000568806.1_1_16:24808813-24809340:+|nuORF;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A nc|ENSG00000090905|Q8NDV7-6|TNRC6A nc|ENSG00000090905|Q8NDV7-6|TNRC6A MSMS UPN47_class_I_Rep_3 4 566.2695922851562 2 566.267467 1130.52038 NaN NaN NaN NaN NaN NaN NaN 46.301 1 49.545 49.045 50.045 3.2439 0 0 0 0.53105 1 9893 9893 1.1933 0.39971 1 41871 1358 26466 26478 48031 48031 -0.03965848500956781 SPEPRRLH 8 Unmodified _SPEPRRLH_ 0 0 0 REV__ENSG00000164185|ENST00000296600|ZNF474 REV__ENSG00000164185|ENST00000296600|ZNF474 MSMS UPN46_class_I_Rep_3 1 496.2767028808594 2 496.275232 990.535912 NaN NaN NaN NaN NaN NaN NaN 70.685 1 70.685 70.185 71.185 0 0 0 0 0.40404 1 16256 16256 5.2307 0 1 + 41872 20040 26467 26479 48032 48032 0.040265275974206816 SPEPRRLRLA 10 Unmodified _SPEPRRLRLA_ 0 0 0 AluJb_dup108300|chr17:46560570-46560875:-|1.9861521821823624|0.282337176510297|2.81|151.0|10|2|sense;AluJb_dup108275|chr17:46342633-46342940:-|1.425766667789134|0.1358832703407998|3.39|151.0|10|2|sense AluJb_dup108300|chr17:46560570-46560875:-|1.9861521821823624|0.282337176510297|2.81|151.0|10|2|sense AluJb_dup108300|chr17:46560570-46560875:-|1.9861521821823624|0.282337176510297|2.81|151.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8561401367188 2 597.856921 1193.69929 0.48377 0.00028922 -0.90274 -0.00053971 -0.41897 -0.00025048 597.8562131074215 85.705 0.33176 89.41 89.3 89.631 3.7058 51 34 2 0 0 0 0.56333 1 20443 20443 1.4819 0 1 194770 41873 12 26468 26480 48033 48033 0.11018705648461946 SPESAALAVRL 11 Unmodified _SPESAALAVRL_ 0 0 0 ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENSG00000100344|ENST00000216180|PNPLA3 ENST00000406117.6_1_22:44322822-44359208:+|nuORF ENST00000406117.6_1_22:44322822-44359208:+|nuORF MSMS UPN46_class_I_Rep_3 1 557.1051025390625 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 65.72 1 65.72 65.22 66.22 0 0 0 0 0.36307 1 14868 14868 8.1555 0 1 41874 1496 26469 26481 48034 48034 0.06716799534751772 SPESAALAVRL 11 Unmodified _SPESAALAVRL_ 0 0 0 ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENSG00000100344|ENST00000216180|PNPLA3 ENST00000406117.6_1_22:44322822-44359208:+|nuORF ENST00000406117.6_1_22:44322822-44359208:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 557.3164672851562 2 557.316763 1112.61897 0.63138 0.00035188 -0.37138 -0.00020698 0.26 0.0001449 557.8179917492803 60.221 0.41376 63.694 63.421 63.835 3.4737 47 28 2 0 0 0 0.67264 1 13237 13237 1.1933 0 1 186030 41875 1496 26469 26481 48035 48035 0.06716799534751772 SPFEELVEVI 10 Unmodified _SPFEELVEVI_ 0 0 0 REV__nc|ENSG00000089250|P29475-3|NOS1 REV__nc|ENSG00000089250|P29475-3|NOS1 MULTI-MSMS UPN47_class_I_Rep_3 4 581.3073120117188 2 581.305529 1160.59651 0.36225 0.00021058 1.619 0.00094115 1.9813 0.0011517 581.3067391906808 59.83 0.60561 62.995 62.775 63.38 3.1651 60 39 2 0 0 0 0.56333 1 13964 13964 1.4819 0.15237 1 90104 + 41876 18005 26470 26482 48036 48036 0.02263155346486201 SPFFFVVYI 9 Unmodified _SPFFFVVYI_ 0 0 0 REV__L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|83|2|anti-sense REV__L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|83|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.8001708984375 2 559.799686 1117.58482 NaN NaN NaN NaN NaN NaN NaN 71.512 1 75.062 74.562 75.562 3.5505 0 0 0 0.39326 1 16690 16690 2.3027 0.24298 1 + 41877 28023 26471 26483 48037 48037 0.030730031138091363 SPFPAYYLY 9 Unmodified _SPFPAYYLY_ 0 0 0 L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|253|3|anti-sense L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|253|3|anti-sense L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|253|3|anti-sense MSMS UPN47_class_I_Rep_3 4 560.7689819335938 2 560.771126 1119.5277 NaN NaN NaN NaN NaN NaN NaN 54.253 1 57.439 56.939 57.939 3.1856 0 0 0 0.26661 1 12304 12304 12.532 1.7076 1 41878 11139 26472 26484 48038 48038 -0.02728464162578348 SPFRGQRF 8 Unmodified _SPFRGQRF_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MSMS UPN48_class_I_Rep_3 7 497.7650146484375 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 23.981 1 27.75 27.25 28.25 3.769 0 0 0 0.40746 1 2711 2711 0.69038 0 1 41879 799 26473 26485 48039 48039 0.017431425687163937 SPGGVYATR 9 Unmodified _SPGGVYATR_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN48_class_I_Rep_2 6 454.2350158691406 2 454.235242 906.45593 0.23525 0.00010686 -0.82825 -0.00037622 -0.593 -0.00026936 454.23478771672546 20.704 0.68777 24.352 23.873 24.561 3.648 115 76 2 0 0 0 0.20317 4 1838 1771;1808;1838;1872 20.415 6.4919 1 62194 41880 824 26474 26486 48040;48041;48042;48043 48042 -0.0010395879643283479 SPGGVYATR 9 Unmodified _SPGGVYATR_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN48_class_I_Rep_3 7 454.23443603515625 2 454.235242 906.45593 NaN NaN NaN NaN NaN NaN NaN 20.553 1 24.22 23.72 24.72 3.6667 0 0 0 0.10979 1 1771 1771 22.658 8.752 1 41881 824 26474 26486 48044 48044 -0.0010395879643283479 SPGGVYATR 9 Unmodified _SPGGVYATR_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN48_class_I_Rep_3 7 454.23486328125 2 454.235242 906.45593 NaN NaN NaN NaN NaN NaN NaN 20.679 1 24.346 23.846 24.846 3.6667 0 0 0 0.087549 1 1808 1808 27.223 9.0769 1 41882 824 26474 26486 48045 48045 -0.0010395879643283479 SPGGVYATR 9 Unmodified _SPGGVYATR_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MSMS UPN48_class_I_Rep_3 7 454.2350158691406 2 454.235242 906.45593 NaN NaN NaN NaN NaN NaN NaN 20.805 1 24.472 23.972 24.972 3.6667 0 0 0 0.081356 1 1844 1844 28.495 13.656 1 41883 824 26474 26486 48046 48046 -0.0010395879643283479 SPGKRMDVP 9 Unmodified _SPGKRMDVP_ 0 0 0 REV__ENST00000552695.5_1_12:108909122-108910750:+|nuORF REV__ENST00000552695.5_1_12:108909122-108910750:+|nuORF MSMS UPN47_class_I_Rep_2 3 493.7563171386719 2 493.758027 985.5015 NaN NaN NaN NaN NaN NaN NaN 30.763 1 34.245 33.745 34.745 3.4821 0 0 0 0.39598 1 5116 5116 1.6526 0 1 + 41884 22971 26475 26487 48047 48047 0.00816943394295322 SPGPLELTR 9 Unmodified _SPGPLELTR_ 0 0 0 REV__ENST00000529348.1_1_11:130109693-130131768:-|nuORF REV__ENST00000529348.1_1_11:130109693-130131768:-|nuORF MSMS UPN48_class_I_Rep_1 5 485.27178955078125 2 485.271824 968.529095 NaN NaN NaN NaN NaN NaN NaN 95.826 1 99.438 98.938 99.938 3.6124 0 0 0 0.39428 1 23083 23083 2.0598 0 1 + 41885 21027 26476 26488 48048 48048 0.043571699261860886 SPGPLKSPQG 10 Unmodified _SPGPLKSPQG_ 0 0 0 nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P MSMS UPN47_class_I_Rep_1 2 484.26397705078125 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 39.767 1 43.434 42.934 43.934 3.6668 0 0 0 0.53105 1 7812 7812 4.897 0 1 41886 16834 26477 26489 48049 48049 0.02884883409149097 SPGPLKSPQG 10 Unmodified _SPGPLKSPQG_ 0 0 0 nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P MULTI-MSMS UPN47_class_I_Rep_3 4 484.26519775390625 2 484.263999 966.513445 -0.34658 -0.00016784 0.20117 9.7417E-05 -0.14541 -7.0419E-05 484.26417771506743 40.172 0.34338 43.409 43.182 43.525 3.2372 35 22 2 0 0 0 0.56118 1 8031 8031 2.9952 0 1 52403 41887 16834 26477 26489 48050 48050 0.02884883409149097 SPGPLKSPQG 10 Unmodified _SPGPLKSPQG_ 0 0 0 nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P nc|ENSG00000242520|P43359|MAGEA5P MSMS UPN48_class_I_Rep_2 6 484.26422119140625 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 39.842 1 43.583 43.083 44.083 3.7413 0 0 0 0.53105 1 7112 7112 2.9952 0 1 41888 16834 26477 26489 48051 48051 0.02884883409149097 SPGPLNTPGK 10 Unmodified _SPGPLNTPGK_ 0 0 0 ENST00000493216.1_1_22:20937040-20937274:+|nuORF ENST00000493216.1_1_22:20937040-20937274:+|nuORF ENST00000493216.1_1_22:20937040-20937274:+|nuORF MSMS UPN48_class_I_Rep_1 5 484.26409912109375 2 484.263999 966.513445 NaN NaN NaN NaN NaN NaN NaN 40.105 1 43.61 43.11 44.11 3.5048 0 0 0 0.53105 1 7158 7158 2.9952 0 1 41889 7080 26478 26490 48052 48052 0.028848834091377284 SPGRSAVAR 9 Unmodified _SPGRSAVAR_ 0 0 0 AluSp_dup15253|chr5:138527767-138528070:-|1.2545977022939223|0.0095971060206683|7.03|151.0|15|3|anti-sense AluSp_dup15253|chr5:138527767-138528070:-|1.2545977022939223|0.0095971060206683|7.03|151.0|15|3|anti-sense AluSp_dup15253|chr5:138527767-138528070:-|1.2545977022939223|0.0095971060206683|7.03|151.0|15|3|anti-sense MSMS UPN47_class_I_Rep_3 4 450.7545471191406 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 102.28 1 105.76 105.26 106.26 3.4873 0 0 0 0.39598 1 25154 25154 1.6526 0 1 41890 226 26479 26491 48053 48053 0.03994552189033129 SPGRVIFTP 9 Unmodified _SPGRVIFTP_ 0 0 0 ENST00000585476.5_1_19:36227541-36227781:+|nuORF ENST00000585476.5_1_19:36227541-36227781:+|nuORF ENST00000585476.5_1_19:36227541-36227781:+|nuORF MSMS UPN48_class_I_Rep_3 7 487.2893371582031 2 487.276909 972.539266 NaN NaN NaN NaN NaN NaN NaN 57.143 1 60.686 60.186 61.186 3.5427 0 0 0 0.39598 1 12266 12266 1.6526 0.85899 1 41891 7578 26480 26492 48054 48054 0.0518977765142381 SPHFFYLN 8 Unmodified _SPHFFYLN_ 0 0 0 REV__L1MB4_dup3818|chr8:47462505-47463076:+|1.5849582243470606|0.0141226752269345|6.81|151.0|28|1|anti-sense REV__L1MB4_dup3818|chr8:47462505-47463076:+|1.5849582243470606|0.0141226752269345|6.81|151.0|28|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.7481689453125 2 512.747985 1023.48142 0.25405 0.00013026 -0.1531 -7.8504E-05 0.10094 5.1759E-05 512.7477974229274 75.228 0.63823 78.632 78.254 78.893 3.4034 96 57 2 0 0 0 0.82752 1 18586 18586 4.756 1.1595 1 151470 + 41892 25969 26481 26493 48055 48055 -0.02938484274000075 SPHFPSLLY 9 Unmodified _SPHFPSLLY_ 0 0 0 L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|44|1|anti-sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|44|1|anti-sense L1MC4a_dup454|chr1:176104412-176105588:+|1.000763049886292|0.0086773130961403|6.85|149.0|44|1|anti-sense MSMS UPN47_class_I_Rep_2 3 530.8211059570312 2 530.776742 1059.53893 NaN NaN NaN NaN NaN NaN NaN 76.933 1 80.265 79.765 80.765 3.3315 0 0 0 0.38478 1 19060 19060 4.3292 0 1 41893 11582 26482 26494 48056 48056 0.011543579315912211 SPHHKIDMY 9 Unmodified _SPHHKIDMY_ 0 0 0 REV__L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|13|1|sense REV__L1MB1_dup5225|chr15:92962178-92963658:-|1.145017316446204|0.0324215234836101|5.14|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.7706298828125 2 564.268758 1126.52296 0.30501 0.00017211 -1.3927 -0.00078585 -1.0877 -0.00061374 564.2679005249161 52.904 0.59313 56.462 56.23 56.823 3.5585 43 34 2 0 0 0 0.20317 1 11808 11808 20.415 2.0414 1 123100 + 41894 25686 26483 26495 48057 48057 -0.035236715769769944 SPHPTPAP 8 Unmodified _SPHPTPAP_ 0 0 0 ENST00000521970.1_1_5:133473560-133474730:+|nuORF;nc|ENSG00000081059|P36402-10|TCF7;nc|ENSG00000081059|P36402-11|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402-4|TCF7;nc|ENSG00000081059|P36402-12|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-2|TCF7;nc|ENSG00000081059|P36402-6|TCF7;nc|ENSG00000081059|P36402-8|TCF7;ENST00000522653.5_1_5:133451068-133478640:+|nuORF;nc|ENSG00000081059|P36402-16|TCF7;nc|ENSG00000081059|P36402-14|TCF7;nc|ENSG00000081059|P36402-3|TCF7 ENST00000521970.1_1_5:133473560-133474730:+|nuORF ENST00000521970.1_1_5:133473560-133474730:+|nuORF MSMS UPN46_class_I_Rep_3 1 402.2059631347656 2 402.205953 802.397353 NaN NaN NaN NaN NaN NaN NaN 119.5 1 119.5 119 120 0 0 0 0 0.40604 1 29702 29702 2.5775 0 1 41895 1212 26484 26496 48058 48058 -0.011750153709044753 SPIFKIKHPG 10 Unmodified _SPIFKIKHPG_ 0 0 0 REV__ENST00000467709.6_1_8:25191660-25227073:+|nuORF REV__ENST00000467709.6_1_8:25191660-25227073:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.23239 0.00013068 0.06762 3.8025E-05 0.30001 0.00016871 562.3345740213587 32.177 0.10121 32.177 32.118 32.219 0 16 7 3 0 0 0 0.56309 1 5467 5467 1.6526 0.17072 1 358850 + 41896 19569 26485 26497 48059 48059 0.09854301502286944 SPIFPLRQPL 10 Unmodified _SPIFPLRQPL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 0.20836 0.00012175 0.38061 0.00022241 0.58896 0.00034416 584.3478614843501 27.423 0.085379 27.423 27.378 27.463 0 11 4 3 0 0 0 0.56354 1 4072 4072 1.3295 0 1 74092 41897 8196 26486 26498 48060 48060 0.10450570673765469 SPIFPLRQPL 10 Unmodified _SPIFPLRQPL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 0.21237 0.0001241 0.16408 9.5881E-05 0.37645 0.00021998 584.3478803674034 27.568 0.20514 27.568 27.506 27.711 0 23 14 3 0 0 0 0.56354 1 4119 4119 1.3295 0.13619 1 805520 41898 8196 26486 26498 48061 48061 0.10450570673765469 SPIFPLRQPL 10 Unmodified _SPIFPLRQPL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3475952148438 2 584.347866 1166.68118 0.23601 0.00013791 0.1184 6.9188E-05 0.35441 0.0002071 584.3479147875621 28.767 0.24433 28.767 28.57 28.814 0 26 17 2 0 0 0 0.56078 1 4476 4476 3.2813 1.4371 1 334790 41899 8196 26486 26498 48062 48062 0.10450570673765469 SPIFPLRQPL 10 Unmodified _SPIFPLRQPL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3482666015625 2 584.347866 1166.68118 0.29226 0.00017078 0.15749 9.2028E-05 0.44975 0.00026281 584.3479218506841 31.186 0.18484 31.186 31.175 31.36 0 16 12 2 0 0 0 0.56333 1 5197 5197 1.4819 0.8804 1 478230 41900 8196 26486 26498 48063 48063 0.10450570673765469 SPIFPLRQPL 10 Unmodified _SPIFPLRQPL_ 0 0 0 HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3482666015625 2 584.347866 1166.68118 0.52606 0.0003074 0.05084 2.9708E-05 0.5769 0.00033711 584.3478481216202 110.2 0.27576 110.2 110.11 110.39 0 53 25 4 0 0 0 0.56354 1 27136 27136 1.3295 1.3295 1 3134500 41901 8196 26486 26498 48064 48064 0.10450570673765469 SPIKMELLF 9 Unmodified _SPIKMELLF_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS UPN47_class_I_Rep_1 2 539.3046875 2 539.304278 1076.594 NaN NaN NaN NaN NaN NaN NaN 87.774 1 91.412 90.912 91.912 3.6372 0 0 0 0.38299 1 21939 21939 4.756 0 1 41902 568 26487 26499 48065 48065 0.05877028407803664 SPIPGCISIY 10 Unmodified _SPIPGCISIY_ 0 0 0 ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF ENST00000467438.1_1_1:87597663-87598596:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.292236328125 2 525.270435 1048.52632 0.22174 0.00011647 -0.17006 -8.9325E-05 0.051687 2.7149E-05 525.2702436212222 51.706 0.70461 55.299 54.994 55.698 3.5932 83 41 3 0 0 0 0.54078 1 11464 11464 6.7232 0.36906 1 163790 41903 6909 26488 26500 48066 48066 0.003995784770268074 SPIVLRGFV 9 Unmodified _SPIVLRGFV_ 0 0 0 L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|256|2|anti-sense;L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|318|3|anti-sense L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|256|2|anti-sense L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|256|2|anti-sense MSMS UPN48_class_I_Rep_1 5 494.3018798828125 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 89.649 1 93.274 92.774 93.774 3.6255 0 0 0 0.39598 1 21537 21537 1.6526 0 1 41904 13496 26489 26501 48067 48067 0.09746941065179726 SPIVLRGFV 9 Unmodified _SPIVLRGFV_ 0 0 0 L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|256|2|anti-sense;L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|318|3|anti-sense L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|256|2|anti-sense L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|256|2|anti-sense MSMS UPN48_class_I_Rep_2 6 494.3008728027344 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 89.004 1 92.742 92.242 93.242 3.7379 0 0 0 0.39598 1 21191 21191 1.6526 0 1 41905 13496 26489 26501 48068 48068 0.09746941065179726 SPIVSKKGYL 10 Unmodified _SPIVSKKGYL_ 0 0 0 ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A ENST00000460788.5_1_2:241656783-241663482:-|nuORF ENST00000460788.5_1_2:241656783-241663482:-|nuORF MSMS UPN48_class_I_Rep_2 6 546.6763916015625 2 546.326599 1090.63865 NaN NaN NaN NaN NaN NaN NaN 107.28 1 110.95 110.45 111.45 3.6783 0 0 0 0.53105 1 25347 25347 22.736 2.2827 1 41906 2652 26490 26502 48069 48069 0.09695175545516577 SPKESTKK 8 Unmodified _SPKESTKK_ 0 0 0 L1M5_dup1481|chr1:84535033-84535797:-|1.4522021576738982|0.0786679400248181|4.21|151.0|1|1|sense L1M5_dup1481|chr1:84535033-84535797:-|1.4522021576738982|0.0786679400248181|4.21|151.0|1|1|sense L1M5_dup1481|chr1:84535033-84535797:-|1.4522021576738982|0.0786679400248181|4.21|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 452.77142333984375 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 30.538 1 30.538 30.038 31.038 0 0 0 0 0.40292 1 4988 4988 6.7232 0.99131 1 41907 9098 26491 26503 48070 48070 0.04693481034871638 SPKKNPNKLLI 11 Unmodified _SPKKNPNKLLI_ 0 0 0 HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|93|1|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|93|1|anti-sense HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|93|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 626.3912353515625 2 626.392805 1250.77106 0.68676 0.00043018 0.47047 0.0002947 1.1572 0.00072488 626.391229659634 108.25 0.09861 108.25 108.19 108.29 0 15 10 2 0 0 0 0.65559 1 26448 26448 2.7352 0 1 4438100 41908 7818 26492 26504 48071 48071 0.15570200282331825 SPKLLGGFVHL 11 Unmodified _SPKLLGGFVHL_ 0 0 0 L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|117|2|anti-sense L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|117|2|anti-sense L1PBa_dup1294|chrX:72554391-72556934:+|1.0854362849122274|0.0295163253684476|5.2|150.0|117|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 0.22494 0.00013145 0.33165 0.0001938 0.5566 0.00032525 584.3480211160503 28.206 0.11183 28.206 28.13 28.242 0 12 7 2 0 0 0 0.65821 1 4290 4290 2.4985 0 1 237250 41909 15369 26493 26505 48072 48072 0.10450570673765469 SPKLLTTTI 9 Unmodified _SPKLLTTTI_ 0 0 0 L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|138|1|anti-sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|138|1|anti-sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|138|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.30059814453125 2 487.30005 972.585547 0.20507 9.9933E-05 -0.069299 -3.3769E-05 0.13577 6.6163E-05 487.29995856673963 58.652 0.51485 58.652 58.364 58.879 0 68 57 2 0 0 0 0.32682 1 12885 12885 12.241 1.4411 1 165020 41910 10084 26494 26506 48073 48073 0.09815797762848888 SPKLLTTTI 9 Unmodified _SPKLLTTTI_ 0 0 0 L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|138|1|anti-sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|138|1|anti-sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|138|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 487.30005 972.585547 0.20507 9.9933E-05 -0.069299 -3.3769E-05 0.13577 6.6163E-05 487.29995856673963 58.652 0.51485 58.652 58.364 58.879 0 0 0 NaN 12.241 68 57 2 NaN NaN NaN NaN 0 NaN NaN 0 165020 41911 10084 26494 26506 0.09815797762848888 SPKTKAYL 8 Unmodified _SPKTKAYL_ 0 0 0 MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|6|1|sense MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|6|1|sense MER4CL34_dup193|chr4:139153481-139154137:+|2.113918326895436|0.0143495959773315|7.2|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 454.2662048339844 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 22.588 1 26.292 25.792 26.792 3.7042 0 0 0 0.40753 1 2650 2650 0.6015 0 1 41912 16025 26495 26507 48074 48074 0.060469729028341135 SPKVHRILF 9 Unmodified _SPKVHRILF_ 0 0 0 REV__L1ME3Cz_dup2893|chr3:196482109-196482860:-|2.705303546694723|0.1580130134527052|4.1|151.0|42|2|anti-sense REV__L1ME3Cz_dup2893|chr3:196482109-196482860:-|2.705303546694723|0.1580130134527052|4.1|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 548.8350219726562 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 110.27 1 113.85 113.35 114.35 3.5835 0 0 0 0.38478 1 27191 27191 4.3292 1.7518 1 + 41913 28114 26496 26508 48075 48075 0.11129721222141598 SPKVHRILF 9 Unmodified _SPKVHRILF_ 0 0 0 REV__L1ME3Cz_dup2893|chr3:196482109-196482860:-|2.705303546694723|0.1580130134527052|4.1|151.0|42|2|anti-sense REV__L1ME3Cz_dup2893|chr3:196482109-196482860:-|2.705303546694723|0.1580130134527052|4.1|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.835205078125 2 548.834926 1095.6553 0.46334 0.0002543 0.30392 0.0001668 0.76726 0.0004211 548.8348927790342 109.29 0.43436 112.92 112.77 113.2 3.6321 145 54 4 0 0 0 0.40174 1 26539 26539 7.9102 0 1 3864600 + 41914 28114 26496 26508 48076 48076 0.11129721222141598 SPLALLAPT 9 Unmodified _SPLALLAPT_ 0 0 0 REV__ENST00000534706.1_1_11:6630285-6630453:+|nuORF REV__ENST00000534706.1_1_11:6630285-6630453:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 441.7681579589844 2 441.768386 881.522219 -0.27065 -0.00011956 0.023906 1.0561E-05 -0.24674 -0.000109 441.76827377283024 96.871 0.97051 100.28 99.84 100.81 3.414 291 132 3 0 0 0 0.33654 1 23988 23988 11.64 3.7301 1 3886400 + 41915 22879 26497 26509 48077 48077 0.07671857045602337 SPLALLAPT 9 Unmodified _SPLALLAPT_ 0 0 0 REV__ENST00000534706.1_1_11:6630285-6630453:+|nuORF REV__ENST00000534706.1_1_11:6630285-6630453:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 441.768386 881.522219 0.16294 7.1982E-05 -0.38581 -0.00017044 -0.22287 -9.8455E-05 441.76794322201897 96.317 0.045685 100.09 100.05 100.1 3.7767 -0.096729 -0.00026571 NaN 11.64 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 59684 + 41916 22879 26497 26509 0.07671857045602337 SPLEKTTVRL 10 Unmodified _SPLEKTTVRL_ 0 0 0 REV__ENST00000283206.8_1_2:112874356-112874578:+|nuORF REV__ENST00000283206.8_1_2:112874356-112874578:+|nuORF MSMS UPN48_class_I_Rep_2 6 572.3394775390625 2 572.340238 1142.66592 NaN NaN NaN NaN NaN NaN NaN 35.408 1 39.096 38.596 39.596 3.6877 0 0 0 0.53105 1 5831 5831 2.9952 0 1 + 41917 21633 26498 26510 48078 48078 0.10029659085898857 SPLFNDLLY 9 Unmodified _SPLFNDLLY_ 0 0 0 REV__HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|132|3|anti-sense REV__HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|132|3|anti-sense MSMS UPN48_class_I_Rep_2 6 541.2804565429688 2 541.281857 1080.54916 NaN NaN NaN NaN NaN NaN NaN 53.04 1 56.65 56.15 57.15 3.6098 0 0 0 0.38478 1 11079 11079 4.3292 0 1 + 41918 23363 26499 26511 48079 48079 0.012109208661513549 SPLILKGF 8 Unmodified _SPLILKGF_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|184|2|anti-sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|184|2|anti-sense MSMS UPN47_class_I_Rep_2 3 437.77337646484375 2 437.773471 873.53239 NaN NaN NaN NaN NaN NaN NaN 56.089 1 59.389 58.889 59.889 3.3009 0 0 0 0.39996 1 12812 12812 7.9102 0 1 + 41919 31503 26500 26512 48080 48080 0.0905646477085611 SPLLLLLLVP 10 Unmodified _SPLLLLLLVP_ 0 0 0 nc|ENSG00000050393|Q96AQ8-2|MCUR1;ENSG00000050393|ENST00000379170|MCUR1 nc|ENSG00000050393|Q96AQ8-2|MCUR1 nc|ENSG00000050393|Q96AQ8-2|MCUR1 MSMS UPN46_class_I_Rep_3 1 539.3695678710938 2 539.367736 1076.72092 NaN NaN NaN NaN NaN NaN NaN 91.432 1 91.432 90.932 91.932 0 0 0 0 0.53105 1 22087 22087 0 0 1 41920 913 26501 26513 48081 48081 0.1856269762449756 SPLLQRPQH 9 Unmodified _SPLLQRPQH_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MULTI-MSMS UPN47_class_I_Rep_2 3 538.303955078125 2 538.30399 1074.59343 -0.0056675 -3.0508E-06 0.0083351 4.4868E-06 0.0026676 1.436E-06 538.3039263770631 25.841 1.0072 29.335 29.013 30.02 3.4945 173 93 3 0 0 0 0.46434 1 3636 3636 4.3292 0 1 166290 41921 2012 26502 26514 48082 48082 0.05911369802993249 SPLRHLHT 8 Unmodified _SPLRHLHT_ 0 0 0 ENST00000264025.7_1_11:119533142-119533592:-|nuORF ENST00000264025.7_1_11:119533142-119533592:-|nuORF ENST00000264025.7_1_11:119533142-119533592:-|nuORF MSMS UPN48_class_I_Rep_2 6 480.7700500488281 2 480.772326 959.530098 NaN NaN NaN NaN NaN NaN NaN 21.713 1 25.359 24.859 25.859 3.6459 0 0 0 0.40604 1 2100 2100 2.5775 0 1 41922 5986 26503 26515 48083 48083 0.04871429085733325 SPLTKSISL 9 Unmodified _SPLTKSISL_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS UPN47_class_I_Rep_1 2 473.28472900390625 2 473.2844 944.554247 -0.11696 -5.5355E-05 0.61092 0.00028914 0.49396 0.00023378 473.28475821849605 47.082 0.53412 50.777 50.42 50.954 3.6951 54 31 2 0 0 0 0.053261 2 10078 10026;10078 47.594 3.822 1 144260 41923 4487 26504 26516 48084;48085 48085 0.079752247287729 SPLTKSISL 9 Unmodified _SPLTKSISL_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS UPN47_class_I_Rep_2 3 473.2841491699219 2 473.2844 944.554247 -0.027316 -1.2928E-05 0.51326 0.00024292 0.48595 0.00022999 473.2846366673736 47.513 0.40375 50.862 50.54 50.944 3.3492 44 27 2 0 0 0 0.026395 1 10161 10161 59.368 3.8656 1 137460 41924 4487 26504 26516 48086 48086 0.079752247287729 SPLTKSISL 9 Unmodified _SPLTKSISL_ 0 0 0 nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS UPN47_class_I_Rep_3 4 473.28460693359375 2 473.2844 944.554247 -0.083228 -3.939E-05 0.44725 0.00021168 0.36402 0.00017229 473.2845561460072 47.543 0.31366 50.784 50.514 50.828 3.2405 33 20 2 0 0 0 0.061655 1 10265 10265 43.982 3.7426 1 141230 41925 4487 26504 26516 48087 48087 0.079752247287729 SPLTVISSHG 10 Unmodified _SPLTVISSHG_ 0 0 0 REV__ENST00000340360.10_2_11:74553867-74554029:-|nuORF REV__ENST00000340360.10_2_11:74553867-74554029:-|nuORF MSMS UPN46_class_I_Rep_3 1 499.2751770019531 2 499.269281 996.52401 NaN NaN NaN NaN NaN NaN NaN 53.287 1 53.287 52.787 53.787 0 0 0 0 0.53105 1 11455 11455 3.2813 0.39209 1 + 41926 21816 26505 26517 48088 48088 0.025608660635839442 SPLVKAIF 8 Unmodified _SPLVKAIF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MSMS UPN47_class_I_Rep_2 3 437.7734680175781 2 437.773471 873.53239 NaN NaN NaN NaN NaN NaN NaN 56.244 1 59.545 59.045 60.045 3.3009 0 0 0 0.3903 1 12860 12860 11.64 3.047 1 41927 5483 26506 26518 48089 48089 0.09056464770833372 SPLVKAIF 8 Unmodified _SPLVKAIF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MSMS UPN47_class_I_Rep_3 4 437.7732849121094 2 437.773471 873.53239 NaN NaN NaN NaN NaN NaN NaN 56.387 1 59.559 59.059 60.059 3.1721 0 0 0 0.3458 1 12958 12958 23.148 5.0134 1 41928 5483 26506 26518 48090 48090 0.09056464770833372 SPLVPSWEGVF 11 Unmodified _SPLVPSWEGVF_ 0 0 0 L1PA12_dup1336|chr12:9704408-9707152:-|1.2233406497126091|0.1641000535216375|2.9|151.0|111|1|anti-sense L1PA12_dup1336|chr12:9704408-9707152:-|1.2233406497126091|0.1641000535216375|2.9|151.0|111|1|anti-sense L1PA12_dup1336|chr12:9704408-9707152:-|1.2233406497126091|0.1641000535216375|2.9|151.0|111|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 609.3137817382812 2 609.313689 1216.61282 0.56993 0.00034726 -0.29313 -0.00017861 0.2768 0.00016866 609.3134976800612 62.241 0.79474 65.703 65.348 66.142 3.4625 123 62 3 0 0 0 0.4608 1 13947 13947 8.7454 2.115 1 580290 41929 13709 26507 26519 48091 48091 0.013182813032244667 SPLVPSWEGVF 11 Unmodified _SPLVPSWEGVF_ 0 0 0 L1PA12_dup1336|chr12:9704408-9707152:-|1.2233406497126091|0.1641000535216375|2.9|151.0|111|1|anti-sense L1PA12_dup1336|chr12:9704408-9707152:-|1.2233406497126091|0.1641000535216375|2.9|151.0|111|1|anti-sense L1PA12_dup1336|chr12:9704408-9707152:-|1.2233406497126091|0.1641000535216375|2.9|151.0|111|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 609.3136596679688 2 609.313689 1216.61282 0.54131 0.00032982 -0.39372 -0.0002399 0.14758 8.9924E-05 609.3134490003355 62.21 0.80659 65.684 65.258 66.065 3.4738 127 62 3 0 0 0 0.4608 1 13919 13919 8.7454 1.6437 1 464710 41930 13709 26507 26519 48092 48092 0.013182813032244667 SPLVWPPKKR 10 Unmodified _SPLVWPPKKR_ 0 0 0 ENSG00000067798|ENST00000397909|NAV3 ENSG00000067798|ENST00000397909|NAV3 ENSG00000067798|ENST00000397909|NAV3 MULTI-MSMS UPN48_class_I_Rep_1 5 604.3681640625 2 604.369133 1206.72371 0.41662 0.00025179 -3.8324 -0.0023162 -3.4158 -0.0020644 604.3671620988575 102.98 0.04554 106.6 106.56 106.6 3.6164 6 5 2 0 0 0 0.56333 1 24825 24825 1.4819 0.15237 1 87928 41931 1039 26508 26520 48093 48093 0.12861965801948827 SPLVYYWC 8 Unmodified _SPLVYYWC_ 0 0 0 L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|216|2|anti-sense L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|216|2|anti-sense L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|216|2|anti-sense MSMS UPN47_class_I_Rep_3 4 515.7388916015625 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 18.713 1 22.067 21.567 22.567 3.3545 0 0 0 0.40404 1 1611 1611 5.2307 0.90143 1 41932 14765 26509 26521 48094 48094 -0.050563622402250985 SPNDSHCLL 9 Unmodified _SPNDSHCLL_ 0 0 0 REV__nc|ENSG00000132196|P56937-2|HSD17B7 REV__nc|ENSG00000132196|P56937-2|HSD17B7 MULTI-MSMS UPN47_class_I_Rep_2 3 493.2242126464844 2 493.224017 984.43348 0.31765 0.00015667 0.63323 0.00031232 0.95088 0.000469 493.2242145442349 78.115 0.43236 81.457 81.252 81.684 3.3428 63 46 2 0 0 0 0.47763 1 19400 19400 2.9952 0.10602 1 104400 + 41933 19001 26510 26522 48095 48095 -0.059359262563589255 SPNKRHNRR 9 Unmodified _SPNKRHNRR_ 0 0 0 REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|11|1|sense REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 582.8272094726562 2 582.826486 1163.63842 NaN NaN NaN NaN NaN NaN NaN 89 1 92.453 91.953 92.953 3.4525 0 0 0 0.39518 1 22119 22119 1.8442 0 1 + 41934 30557 26511 26523 48096 48096 0.06314613388872203 SPNQVFGYL 9 Unmodified _SPNQVFGYL_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MULTI-MSMS UPN47_class_I_Rep_2 3 513.7369384765625 2 512.758549 1023.50255 0.11639 5.9678E-05 -0.84085 -0.00043115 -0.72446 -0.00037148 512.7580885514841 74.064 0.57563 77.369 77.141 77.717 3.3048 104 61 2 0 0 0 0.40174 1 18260 18260 7.9102 2.1783 1 156560 + 41935 21091 26512 26524 48097 48097 -0.008265189651297078 SPNQVFGYL 9 Unmodified _SPNQVFGYL_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 512.758549 1023.50255 0.2476 0.00012696 -0.59292 -0.00030402 -0.34532 -0.00017706 512.7580475922285 73.854 0.54597 77.24 77.076 77.622 3.3861 -0.087578 0.00017677 NaN 7.9102 91 53 3 NaN NaN NaN NaN 0 NaN NaN 0 139610 + 41936 21091 26512 26524 -0.008265189651297078 SPNQVFGYL 9 Unmodified _SPNQVFGYL_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 512.758549 1023.50255 0.11639 5.9678E-05 -0.84085 -0.00043115 -0.72446 -0.00037148 512.7580885514841 74.064 0.57563 77.369 77.141 77.717 3.3048 0.041285 -7.7489E-05 NaN 7.9102 104 61 2 NaN NaN NaN NaN 0 NaN NaN 0 156560 + 41937 21091 26512 26524 -0.008265189651297078 SPNTIVRETY 10 Unmodified _SPNTIVRETY_ 0 0 0 MLT1H1-int_dup269|chr11:107323074-107323536:+|1.1299834884929354|0.0501408833086542|4.49|149.0|26|2|anti-sense MLT1H1-int_dup269|chr11:107323074-107323536:+|1.1299834884929354|0.0501408833086542|4.49|149.0|26|2|anti-sense MLT1H1-int_dup269|chr11:107323074-107323536:+|1.1299834884929354|0.0501408833086542|4.49|149.0|26|2|anti-sense MSMS UPN48_class_I_Rep_1 5 590.3030395507812 2 590.303852 1178.59315 NaN NaN NaN NaN NaN NaN NaN 32.678 1 36.205 35.705 36.705 3.5266 0 0 0 0.53105 1 4998 4998 1.1933 0.12188 1 41938 16445 26513 26525 48098 48098 0.010999052924944408 SPPEKKLKRY 10 Unmodified _SPPEKKLKRY_ 0 0 0 ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1 ENSG00000109458|ENST00000262994|GAB1 ENSG00000109458|ENST00000262994|GAB1 MULTI-MSMS UPN46_class_I_Rep_3 1 415.9150390625 3 415.915312 1244.72411 0.069306 2.8825E-05 -0.06681 -2.7787E-05 0.002496 1.0381E-06 415.91528283836374 41.764 0.4317 41.764 41.5 41.932 0 79 51 2 0 0 0 0.56337 1 8219 8219 1.4551 0 1 174810 41939 1896 26514 26526 48099 48099 0.11153340731198114 SPPFPSFT 8 Unmodified _SPPFPSFT_ 0 0 0 REV__L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|114|3|anti-sense REV__L1PA16_dup12223|chr15:61942848-61944773:+|1.009616650369987|0.0870769561811202|3.54|151.0|114|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.21612548828125 2 440.215986 878.417419 0.16 7.0436E-05 0.55205 0.00024302 0.71206 0.00031346 440.21614579228134 106.53 0.41147 106.53 106.46 106.87 0 75 48 2 0 0 0 0.82752 1 26003 26003 0.69038 0 1 193120 + 41940 23231 26515 26527 48100 48100 -0.026652644309365314 SPPGLTRAPE 10 Unmodified _SPPGLTRAPE_ 0 0 0 L1PA7_dup7622|chr9:135840577-135843045:+|1.0648767794827336|0.040914429280019|4.7|151.0|22|1|sense L1PA7_dup7622|chr9:135840577-135843045:+|1.0648767794827336|0.040914429280019|4.7|151.0|22|1|sense L1PA7_dup7622|chr9:135840577-135843045:+|1.0648767794827336|0.040914429280019|4.7|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 512.7745361328125 2 512.774731 1023.53491 0.27189 0.00013942 -0.51688 -0.00026504 -0.24499 -0.00012562 512.7744125143857 37.973 0.48143 41.478 41.212 41.693 3.5052 78 48 2 0 0 0 0.56118 1 6558 6558 2.9952 1.3426 1 111320 41941 14886 26516 26528 48101 48101 0.02408268437852712 SPPGLTRAPE 10 Unmodified _SPPGLTRAPE_ 0 0 0 L1PA7_dup7622|chr9:135840577-135843045:+|1.0648767794827336|0.040914429280019|4.7|151.0|22|1|sense L1PA7_dup7622|chr9:135840577-135843045:+|1.0648767794827336|0.040914429280019|4.7|151.0|22|1|sense L1PA7_dup7622|chr9:135840577-135843045:+|1.0648767794827336|0.040914429280019|4.7|151.0|22|1|sense MSMS UPN48_class_I_Rep_1 5 512.7744140625 2 512.774731 1023.53491 NaN NaN NaN NaN NaN NaN NaN 38.196 1 41.701 41.201 42.201 3.5052 0 0 0 0.53105 1 6586 6586 2.9952 0 1 41942 14886 26516 26528 48102 48102 0.02408268437852712 SPPGRRVAE 9 Unmodified _SPPGRRVAE_ 0 0 0 REV__THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|21|2|sense REV__THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 484.7670593261719 2 484.76724 967.519927 NaN NaN NaN NaN NaN NaN NaN 94.22 1 97.84 97.34 98.34 3.6208 0 0 0 0.39428 1 22668 22668 2.0598 0 1 + 41943 32198 26517 26529 48103 48103 0.03486821360513659 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.3194580078125 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 99.683 1 103.48 102.98 103.98 3.7942 0 0 0 0.53105 1 24640 24640 2.7352 0 1 + 41944 22093 26518 26530 48104 48104 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.3189086914062 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 99.815 1 103.61 103.11 104.11 3.7942 0 0 0 0.53105 1 24678 24678 3.2813 0.28607 1 + 41945 22093 26518 26530 48105 48105 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.3197021484375 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 99.994 1 103.79 103.29 104.29 3.7942 0 0 0 0.53105 1 24726 24726 5.2969 0.39987 1 + 41946 22093 26518 26530 48106 48106 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.3197631835938 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.13 1 103.92 103.42 104.42 3.7942 0 0 0 0.53105 1 24762 24762 5.2969 0.39987 1 + 41947 22093 26518 26530 48107 48107 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.3203735351562 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.26 1 104.05 103.55 104.55 3.7942 0 0 0 0.53105 1 24789 24789 3.2813 0.28607 1 + 41948 22093 26518 26530 48108 48108 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.3187866210938 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.32 1 104.11 103.61 104.61 3.7942 0 0 0 0.53105 1 24804 24804 5.2969 0.39987 1 + 41949 22093 26518 26530 48109 48109 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.3190307617188 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 98.145 1 101.75 101.25 102.25 3.6065 0 0 0 0.53105 1 23679 23679 5.2969 0.39987 1 + 41950 22093 26518 26530 48110 48110 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.31884765625 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 99.632 1 103.24 102.74 103.74 3.6065 0 0 0 0.53105 1 24049 24049 5.2969 0.39987 1 + 41951 22093 26518 26530 48111 48111 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.3198852539062 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 99.857 1 103.46 102.96 103.96 3.6065 0 0 0 0.53105 1 24110 24110 5.2969 0.39987 1 + 41952 22093 26518 26530 48112 48112 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.3197021484375 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.12 1 103.73 103.23 104.23 3.6084 0 0 0 0.53105 1 24179 24179 5.2969 0.39987 1 + 41953 22093 26518 26530 48113 48113 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.3195190429688 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.24 1 103.85 103.35 104.35 3.6084 0 0 0 0.53105 1 24211 24211 5.2969 0.39987 1 + 41954 22093 26518 26530 48114 48114 0.047301572059723185 SPPGRSRTWK 10 Unmodified _SPPGRSRTWK_ 0 0 0 REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF MSMS UPN48_class_I_Rep_1 5 586.3201904296875 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 100.56 1 104.17 103.67 104.67 3.6084 0 0 0 0.53105 1 24289 24289 5.2969 0.39987 1 + 41955 22093 26518 26530 48115 48115 0.047301572059723185 SPPIHIMLW 9 Unmodified _SPPIHIMLW_ 0 0 0 REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF REV__ENST00000275954.3_1_X:34647786-34647951:-|nuORF MSMS UPN47_class_I_Rep_2 3 547.2973022460938 2 547.296788 1092.57902 NaN NaN NaN NaN NaN NaN NaN 18.618 1 22.008 21.508 22.508 3.3898 0 0 0 0.4007 1 1605 1605 0.52476 0 1 + 41956 21616 26519 26531 48116 48116 0.036435813304706244 SPPKEAWLW 9 Unmodified _SPPKEAWLW_ 0 0 0 MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|13|3|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|13|3|sense MLT1D_dup3216|chr3:25742805-25743312:+|1.4502257556075|0.1687878946374403|3.1|150.0|13|3|sense MSMS UPN48_class_I_Rep_1 5 557.2890625 2 557.290017 1112.56548 NaN NaN NaN NaN NaN NaN NaN 41.46 1 44.966 44.466 45.466 3.506 0 0 0 0.39598 1 7560 7560 1.6526 0.45928 1 41957 16353 26520 26532 48117 48117 0.013700468228989848 SPPKKPAPVPA 11 Unmodified _SPPKKPAPVPA_ 0 0 0 nc|ENSG00000160194|P56181|NDUFV3 nc|ENSG00000160194|P56181|NDUFV3 nc|ENSG00000160194|P56181|NDUFV3 MSMS UPN48_class_I_Rep_1 5 544.825439453125 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 88.67 1 92.293 91.793 92.793 3.6229 0 0 0 0.38417 1 21276 21276 1.3295 0.63916 1 41958 16727 26521 26533 48118 48118 0.09866595265361866 SPPKKPAPVPA 11 Unmodified _SPPKKPAPVPA_ 0 0 0 nc|ENSG00000160194|P56181|NDUFV3 nc|ENSG00000160194|P56181|NDUFV3 nc|ENSG00000160194|P56181|NDUFV3 MSMS UPN48_class_I_Rep_1 5 544.8255615234375 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 89.656 1 93.282 92.782 93.782 3.6255 0 0 0 0.38417 1 21539 21539 1.3295 0.63916 1 41959 16727 26521 26533 48119 48119 0.09866595265361866 SPPLLLLK 8 Unmodified _SPPLLLLK_ 0 0 0 REV__L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|21|2|anti-sense REV__L1ME1_dup26781|chr16:57580551-57580980:+|1.1168081211537504|0.0191965616954777|5.86|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79937744140625 2 440.796946 879.57934 -0.40624 -0.00017907 3.1419 0.0013849 2.7357 0.0012059 440.79963490272775 29.709 1.1249 33.467 33.021 34.146 3.7578 119 81 2 0 0 0 0.82752 1 4860 4860 0.69038 0 1 103230 + 41960 27713 26522 26534 48120 48120 0.1347332432200119 SPPPAPVPSPL 11 Unmodified _SPPPAPVPSPL_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MSMS UPN46_class_I_Rep_3 1 529.7988891601562 2 529.797675 1057.5808 NaN NaN NaN NaN NaN NaN NaN 17.624 1 17.624 17.124 18.124 0 0 0 0 0.38417 1 1414 1414 1.1933 0 1 41961 2531 26523 26535 48121 48121 0.05430913620079991 SPPPKQPAARG 11 Unmodified _SPPPKQPAARG_ 0 0 0 ENST00000475483.5_1_3:141595089-141622464:+|nuORF ENST00000475483.5_1_3:141595089-141622464:+|nuORF ENST00000475483.5_1_3:141595089-141622464:+|nuORF MSMS UPN48_class_I_Rep_2 6 553.3098754882812 2 553.309272 1104.60399 NaN NaN NaN NaN NaN NaN NaN 39.747 1 43.488 42.988 43.988 3.7413 0 0 0 0.38417 1 7085 7085 1.1933 0.59184 1 41962 6957 26524 26536 48122 48122 0.05587352457405359 SPPQREWQS 9 Unmodified _SPPQREWQS_ 0 0 0 REV__L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|6|1|sense REV__L1PA11_dup1274|chr5:58514797-58521392:+|1.209688259789814|0.0190852233560477|5.99|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 557.8165283203125 2 557.767437 1113.52032 NaN NaN NaN NaN NaN NaN NaN 113.92 1 117.57 117.07 118.07 3.6511 0 0 0 0.39518 1 27107 27107 1.8442 0 1 + 41963 29003 26525 26537 48123 48123 -0.031898037103019306 SPPRELIY 8 Unmodified _SPPRELIY_ 0 0 0 REV__ENST00000589123.5_2_19:3464049-3464370:+|nuORF REV__ENST00000589123.5_2_19:3464049-3464370:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 487.2657470703125 2 487.768917 973.523281 -0.19968 -9.7399E-05 -1.964 -0.00095795 -2.1636 -0.0010554 487.7677408794978 43.005 0.10925 46.692 46.637 46.746 3.6875 14 7 2 0 0 0 0.72333 1 8797 8797 5.2307 0 1 42414 + 41964 23156 26526 26538 48124 48124 0.03546071414518792 SPPRKKRED 9 Unmodified _SPPRKKRED_ 0 0 0 ENST00000374602.2_1_1:23735155-23745710:-|nuORF;nc|ENSG00000204219|O75764-2|TCEA3;ENSG00000204219|ENST00000450454|TCEA3 ENST00000374602.2_1_1:23735155-23745710:-|nuORF ENST00000374602.2_1_1:23735155-23745710:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.7777709960938 2 556.812179 1111.60981 NaN NaN NaN NaN NaN NaN NaN 67.119 1 70.31 69.81 70.81 3.1914 0 0 0 0.3967 1 16232 16232 1.4819 0.68827 1 41965 5506 26527 26539 48125 48125 0.05846450969079342 SPPRSRKSH 9 Unmodified _SPPRSRKSH_ 0 0 0 REV__L1M4b_dup3518|chr14:59457052-59459223:-|1.107423614197775|0.4303489295295308|1.36|151.0|29|2|sense REV__L1M4b_dup3518|chr14:59457052-59459223:-|1.107423614197775|0.4303489295295308|1.36|151.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 525.826904296875 2 526.291414 1050.56827 NaN NaN NaN NaN NaN NaN NaN 54.61 1 58.124 57.624 58.624 3.5143 0 0 0 0.38639 1 11579 11579 3.9444 1.6417 1 + 41966 24546 26528 26540 48126 48126 0.045013150004251656 SPPTPLTLR 9 Unmodified _SPPTPLTLR_ 0 0 0 ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5 ENST00000528727.5_1_11:99426939-100095567:+|nuORF ENST00000528727.5_1_11:99426939-100095567:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 491.7951965332031 2 491.290017 980.565481 0.18619 9.1473E-05 0.52479 0.00025783 0.71098 0.0003493 491.28913265228385 53.518 1.0287 57.037 56.544 57.573 3.5192 144 73 3 0 0 0 0.42249 1 11259 11259 6.7232 0 1 680260 41967 3557 26529 26541 48127 48127 0.07442046822905013 SPQDPSLEAS 10 Unmodified _SPQDPSLEAS_ 0 0 0 nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF nc|ENSG00000064607|Q8IX01-4|SUGP2 nc|ENSG00000064607|Q8IX01-4|SUGP2 MSMS UPN48_class_I_Rep_1 5 515.7383422851562 2 515.738011 1029.46147 NaN NaN NaN NaN NaN NaN NaN 25.786 1 29.352 28.852 29.852 3.5667 0 0 0 0.53105 1 3058 3058 1.3295 0.13619 1 41968 992 26530 26542 48128 48128 -0.0520832479528508 SPQHFYVEV 9 Unmodified _SPQHFYVEV_ 0 0 0 MLT1B_dup979|chr1:209772117-209772492:-|1.1431821985497133|0.1176187005922371|3.28|151.0|1|1|sense MLT1B_dup979|chr1:209772117-209772492:-|1.1431821985497133|0.1176187005922371|3.28|151.0|1|1|sense MLT1B_dup979|chr1:209772117-209772492:-|1.1431821985497133|0.1176187005922371|3.28|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 553.2698364257812 2 553.269281 1104.52401 NaN NaN NaN NaN NaN NaN NaN 33.685 1 36.959 36.459 37.459 3.2748 0 0 0 0.39518 1 6034 6034 1.8442 0 1 41969 16283 26531 26543 48129 48129 -0.02407133936435457 SPRDLLALAT 10 Unmodified _SPRDLLALAT_ 0 0 0 REV__ENSG00000104537|ENST00000419625|ANXA13 REV__ENSG00000104537|ENST00000419625|ANXA13 MSMS UPN47_class_I_Rep_1 2 528.81787109375 2 528.806031 1055.59751 NaN NaN NaN NaN NaN NaN NaN 63.784 1 67.14 66.64 67.64 3.3557 0 0 0 0.53105 1 15114 15114 5.7319 0.83484 1 + 41970 18259 26532 26544 48130 48130 0.07193414506036788 SPRFVTKY 8 Unmodified _SPRFVTKY_ 0 0 0 REV__HERVH-int_dup5225|chr16:30259483-30260042:+|10.116692415378212|0.4560147608122307|4.47|151.0|12|2|sense REV__HERVH-int_dup5225|chr16:30259483-30260042:+|10.116692415378212|0.4560147608122307|4.47|151.0|12|2|sense MSMS UPN47_class_I_Rep_2 3 499.27557373046875 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 50.863 1 54.201 53.701 54.701 3.3386 0 0 0 0.40472 1 11217 11217 4.3292 0 1 + 41971 23690 26533 26545 48131 48131 0.04085777651414446 SPRKHKYRSS 10 Unmodified _SPRKHKYRSS_ 0 0 0 ENSG00000132478|ENST00000589666|UNK ENSG00000132478|ENST00000589666|UNK ENSG00000132478|ENST00000589666|UNK MSMS UPN48_class_I_Rep_1 5 623.3441772460938 2 623.344178 1244.6738 NaN NaN NaN NaN NaN NaN NaN 108.49 1 112.12 111.62 112.62 3.6313 0 0 0 0.53105 1 26256 26256 2.9952 0 1 41972 2759 26534 26546 48132 48132 0.06125231126043218 SPRKKPVH 8 Unmodified _SPRKKPVH_ 0 0 0 REV__ENST00000300571.6_1_16:19871181-19871223:-|nuORF REV__ENST00000300571.6_1_16:19871181-19871223:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 474.7906494140625 2 474.790518 947.566484 0.30626 0.00014541 -0.019155 -9.0945E-06 0.2871 0.00013631 474.7904238237729 107.8 0.28529 111.33 111.25 111.54 3.5345 75 33 4 0 0 0 0.82752 1 26123 26123 11.64 11.64 1 90465000 + 41973 21669 26535 26547 48133 48133 0.09060305982472983 SPRKKPVH 8 Unmodified _SPRKKPVH_ 0 0 0 REV__ENST00000300571.6_1_16:19871181-19871223:-|nuORF REV__ENST00000300571.6_1_16:19871181-19871223:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 474.7906188964844 2 474.790518 947.566484 0.095869 4.5518E-05 0.31513 0.00014962 0.411 0.00019514 474.79057154541954 110.51 0.09803 114.14 114.12 114.22 3.6326 14 8 3 0 0 0 0.82752 1 26833 26833 2.5775 0 1 1177300 + 41974 21669 26535 26547 48134 48134 0.09060305982472983 SPRKKPVH 8 Unmodified _SPRKKPVH_ 0 0 0 REV__ENST00000300571.6_1_16:19871181-19871223:-|nuORF REV__ENST00000300571.6_1_16:19871181-19871223:-|nuORF MSMS UPN48_class_I_Rep_3 7 474.791015625 2 474.790518 947.566484 NaN NaN NaN NaN NaN NaN NaN 110.59 1 114.26 113.76 114.76 3.6654 0 0 0 0.40604 1 26243 26243 2.5775 0 1 + 41975 21669 26535 26547 48135 48135 0.09060305982472983 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MSMS UPN47_class_I_Rep_1 2 627.382080078125 2 627.381094 1252.74764 NaN NaN NaN NaN NaN NaN NaN 103.94 1 107.7 107.2 108.2 3.7627 0 0 0 0.53105 1 25549 25549 9.3831 3.1773 1 41976 574 26536 26548 48136 48136 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-SECPEP UPN47_class_I_Rep_1 2 627.3828735351562 2 627.381094 1252.74764 0.55818 0.00035019 1.1121 0.00069772 1.6703 0.0010479 627.8836330870598 104.6 0.1075 108.36 108.3 108.4 3.7627 34 16 3 0 0 0 0.84575 1 25696 25696 2.9952 2.9952 1 52586000 41977 574 26536 26548 48137 48137 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS UPN47_class_I_Rep_2 3 627.3837280273438 2 627.381094 1252.74764 0.63482 0.00039827 2.2043 0.0013829 2.8391 0.0017812 627.3825258065075 103.64 0.23314 107.16 106.96 107.19 3.5231 90 35 4 0 0 0 0.52083 1 25180 25180 9.3831 3.1773 1 33091000 41978 574 26536 26548 48138 48138 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS UPN47_class_I_Rep_3 4 627.3812255859375 2 627.381094 1252.74764 0.51264 0.00032162 2.3261 0.0014594 2.8387 0.001781 627.3824096752857 104.81 0.19852 108.34 108.2 108.4 3.5308 79 30 3 0 0 0 0.54822 1 25686 25686 5.7319 0.43497 1 32129000 41979 574 26536 26548 48139 48139 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-SECPEP UPN47_class_I_Rep_3 4 626.8893432617188 2 627.381094 1252.74764 0.51251 0.00032154 3.0216 0.0018957 3.5341 0.0022172 627.3829293951825 104.18 0.10489 107.7 107.63 107.74 3.5205 24 16 2 0 0 0 0.84575 1 25536 25536 5.7319 0.43497 1 15700000 41980 574 26536 26548 48140 48140 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS UPN48_class_I_Rep_1 5 627.8839721679688 2 627.381094 1252.74764 0.42851 0.00026884 2.1023 0.0013189 2.5308 0.0015878 627.883971009003 103.5 0.30306 107.12 106.85 107.15 3.6209 108 43 3 0 0 0 0.54822 2 24908 24908;24925 5.7319 0.43497 1 47965000 41981 574 26536 26548 48141;48142 48141 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS UPN48_class_I_Rep_2 6 627.8853149414062 2 627.381094 1252.74764 0.49505 0.00031058 3.4806 0.0021837 3.9757 0.0024943 627.8848633590973 103.66 0.19643 107.36 107.27 107.47 3.6991 45 31 2 0 0 0 0.54822 2 24523 24523;24532 5.7319 0.43497 1 32365000 41982 574 26536 26548 48143;48144 48143 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS UPN48_class_I_Rep_2 6 627.3810424804688 2 627.381094 1252.74764 0.49513 0.00031064 1.4031 0.00088027 1.8982 0.0011909 627.3816744723706 104.37 0.13483 108.07 108.03 108.17 3.6991 59 20 3 0 0 0 0.54822 1 24699 24699 5.7319 0.43497 1 28312000 41983 574 26536 26548 48145 48145 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MSMS UPN48_class_I_Rep_2 6 627.38134765625 2 627.381094 1252.74764 NaN NaN NaN NaN NaN NaN NaN 103.97 1 107.67 107.17 108.17 3.6991 0 0 0 0.53105 1 24600 24600 5.7319 0.43497 1 41984 574 26536 26548 48146 48146 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MSMS UPN48_class_I_Rep_3 7 627.884521484375 2 627.381094 1252.74764 0.60321 0.00037844 1.5157 0.00095091 2.1189 0.0013294 627.8836774193069 104.28 0.27719 108 107.92 108.2 3.7192 122 40 4 0 0 0 0.54822 1 24651 24651 5.7319 0.43497 1 30793000 41985 574 26536 26548 48147 48147 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MATCH UPN47_class_I_Rep_1 2 2 627.381094 1252.74764 0.55767 0.00034987 -0.52997 -0.00033249 0.027703 1.7381E-05 627.8841102195194 104.29 0.018066 108.06 108.05 108.07 3.7627 0.018776 -0.0030661 NaN 5.7319 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 7250700 41986 574 26536 26548 0.13137199288371448 SPRKKRPRQT 10 Unmodified _SPRKKRPRQT_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;chr10:96332596-96335894|64|17.97|0.13|7.15|+|ENST00000630152|DNTT,DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MULTI-MATCH UPN47_class_I_Rep_3 4 2 627.381094 1252.74764 0.5126 0.00032159 2.6901 0.0016877 3.2026 0.0020093 627.8852885219375 104.51 0.024178 108.03 108.02 108.04 3.5205 -0.01069 0.00097427 NaN 5.7319 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 8275800 41987 574 26536 26548 0.13137199288371448 SPRKKSTHT 9 Unmodified _SPRKKSTHT_ 0 0 0 Charlie24_dup1087|chr12:116201623-116201774:+|1.1098947822011564|0.0074249904865819|7.22|150.0|7|1|anti-sense Charlie24_dup1087|chr12:116201623-116201774:+|1.1098947822011564|0.0074249904865819|7.22|150.0|7|1|anti-sense Charlie24_dup1087|chr12:116201623-116201774:+|1.1098947822011564|0.0074249904865819|7.22|150.0|7|1|anti-sense MSMS UPN47_class_I_Rep_2 3 521.2958374023438 2 521.293622 1040.57269 NaN NaN NaN NaN NaN NaN NaN 107.86 1 111.4 110.9 111.9 3.5345 0 0 0 0.37692 1 26116 26116 6.2058 1.8765 1 41988 503 26537 26549 48148 48148 0.054027794233206805 SPRLIHLVE 9 Unmodified _SPRLIHLVE_ 0 0 0 REV__L1MEf_dup7309|chr10:21571651-21572616:-|1.0928243923756988|0.0046516148887052|7.88|150.0|58|2|anti-sense REV__L1MEf_dup7309|chr10:21571651-21572616:-|1.0928243923756988|0.0046516148887052|7.88|150.0|58|2|anti-sense MSMS UPN46_class_I_Rep_3 1 532.3162231445312 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 109.84 1 109.84 109.34 110.34 0 0 0 0 0.38639 1 27018 27018 3.9444 0 1 + 41989 28680 26538 26550 48149 48149 0.0897742460556401 SPRLQPIRR 9 Unmodified _SPRLQPIRR_ 0 0 0 ENST00000260128.8_1_8:70570870-70571554:+|nuORF ENST00000260128.8_1_8:70570870-70571554:+|nuORF ENST00000260128.8_1_8:70570870-70571554:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 561.8453979492188 2 561.846356 1121.67816 0.45461 0.00025542 -0.83634 -0.0004699 -0.38173 -0.00021448 561.8458098774329 87.768 0.5188 91.387 91.136 91.655 3.6187 68 52 2 0 0 0 0.50088 1 20991 20991 0.52476 0 1 166820 41990 5947 26539 26551 48150 48150 0.12218740339585565 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3893432617188 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.95 1 108.68 108.18 109.18 3.7395 0 0 0 0.38417 1 25769 25769 4.897 0 1 41991 16509 26540 26552 48151 48151 0.14178967573889167 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3870239257812 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.96 1 108.7 108.2 109.2 3.7395 0 0 0 0.38417 1 25774 25774 4.897 0 1 41992 16509 26540 26552 48152 48152 0.14178967573889167 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MSMS UPN47_class_I_Rep_1 2 626.3867797851562 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 105.09 1 108.83 108.33 109.33 3.7395 0 0 0 0.38417 1 25803 25803 4.897 0 1 41993 16509 26540 26552 48153 48153 0.14178967573889167 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MSMS UPN48_class_I_Rep_1 5 626.3863525390625 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 104.83 1 108.46 107.96 108.96 3.6247 0 0 0 0.38417 1 25259 25259 4.897 0 1 41994 16509 26540 26552 48154 48154 0.14178967573889167 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.888916015625 2 626.385845 1250.75714 0.49471 0.00030988 1.0226 0.00064055 1.5173 0.00095043 626.3866339962977 104.19 0.23666 107.89 107.8 108.03 3.6991 54 33 2 0 0 0 0.61292 1 24633 24633 4.897 0 1 61772000 41995 16509 26540 26552 48155 48155 0.14178967573889167 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MSMS UPN48_class_I_Rep_2 6 626.3868408203125 2 626.385845 1250.75714 NaN NaN NaN NaN NaN NaN NaN 103.22 1 106.93 106.43 107.43 3.7108 0 0 0 0.38417 1 24436 24436 4.897 0 1 41996 16509 26540 26552 48156 48156 0.14178967573889167 SPRPKASKPRK 11 Unmodified _SPRPKASKPRK_ 0 0 0 MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MLT2B3_dup2592|chr13:28076280-28076639:-|1.0161608495963643|0.0076958838217353|7.04|148.0|13|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.38671875 2 626.385845 1250.75714 0.59994 0.0003758 2.1912 0.0013725 2.7911 0.0017483 626.3874924506532 104.25 0.27109 107.97 107.93 108.2 3.7192 73 39 2 0 0 0 0.61292 2 24632 24632;24662 4.897 0 1 49877000 41997 16509 26540 26552 48157;48158 48157 0.14178967573889167 SPRPLAAPVTV 11 Unmodified _SPRPLAAPVTV_ 0 0 0 ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 554.3297119140625 2 554.329673 1106.64479 0.63307 0.00035093 -0.39968 -0.00022155 0.23339 0.00012938 554.3293231648793 107.88 0.28848 111.42 111.34 111.63 3.5345 87 34 4 0 0 0 0.35213 1 26113 26113 11.495 4.2055 1 24882000 41998 6354 26541 26553 48159 48159 0.09573693777042536 SPRPLAAPVTV 11 Unmodified _SPRPLAAPVTV_ 0 0 0 ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 554.3297119140625 2 554.329673 1106.64479 0.49497 0.00027438 -0.15618 -8.6576E-05 0.33879 0.0001878 554.3294386678699 107.81 0.15082 111.49 111.44 111.59 3.6783 43 14 4 0 0 0 0.48412 1 25516 25516 8.1555 0 1 38767000 41999 6354 26541 26553 48160 48160 0.09573693777042536 SPRPLAAPVTV 11 Unmodified _SPRPLAAPVTV_ 0 0 0 ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 554.329673 1106.64479 0.52606 0.00029161 -0.022013 -1.2202E-05 0.50404 0.00027941 554.3295953662268 107.86 0.50998 111.53 111.46 111.97 3.6721 0.021715 0.00021059 NaN 11.495 71 41 5 NaN NaN NaN NaN 0 NaN NaN 0 20684000 42000 6354 26541 26553 0.09573693777042536 SPRPLAAPVTV 11 Unmodified _SPRPLAAPVTV_ 0 0 0 ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 554.329673 1106.64479 0.50277 0.0002787 -0.036988 -2.0503E-05 0.46578 0.0002582 554.3294684129388 107.87 0.33831 111.4 111.34 111.68 3.5382 -0.10135 0.00019399 NaN 11.495 83 38 3 NaN NaN NaN NaN 0 NaN NaN 0 21917000 42001 6354 26541 26553 0.09573693777042536 SPRPLAAPVTV 11 Unmodified _SPRPLAAPVTV_ 0 0 0 ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF ENST00000367592.5_1_6:143771985-143772150:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 554.329673 1106.64479 0.49492 0.00027435 -1.0188 -0.00056473 -0.52384 -0.00029038 554.3288175188405 107.98 0.11688 111.65 111.59 111.71 3.6746 0.14642 -0.00089446 NaN 11.495 27 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2771000 42002 6354 26541 26553 0.09573693777042536 SPRPLGHF 8 Unmodified _SPRPLGHF_ 0 0 0 ENSG00000163132|ENST00000382723|MSX1 ENSG00000163132|ENST00000382723|MSX1 ENSG00000163132|ENST00000382723|MSX1 MSMS UPN48_class_I_Rep_3 7 455.74993896484375 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 21.463 1 25.178 24.678 25.678 3.7144 0 0 0 0.40738 1 2019 2019 0.79363 0 1 42003 3984 26542 26554 48161 48161 0.023723551657212738 SPRRCRNFY 9 Unmodified _SPRRCRNFY_ 0 0 0 REV__L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|91|2|sense REV__L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|91|2|sense MSMS UPN47_class_I_Rep_3 4 599.7984619140625 2 599.798549 1197.58254 NaN NaN NaN NaN NaN NaN NaN 48.24 1 51.48 50.98 51.98 3.2405 0 0 0 0.39428 1 10470 10470 2.0598 0 1 + 42004 29967 26543 26555 48162 48162 -0.00834355842948753 SPRRLLHFV 9 Unmodified _SPRRLLHFV_ 0 0 0 REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|292|2|anti-sense REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|292|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 562.3345947265625 2 562.838 1123.66145 0.43067 0.0002424 -0.7858 -0.00044228 -0.35513 -0.00019988 563.3396833523444 108.63 1.0672 112.3 112.19 113.26 3.6751 179 131 3 0 0 0 0.12034 1 25804 25804 7.2892 0 1 73109000 + 42005 29725 26544 26556 48163 48163 0.10456239453628768 SPRSGNIHHKL 11 Unmodified _SPRSGNIHHKL_ 0 0 0 L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|41|2|sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|41|2|sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|41|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 623.3442993164062 2 623.344178 1244.6738 0.55194 0.00034405 -0.096125 -5.9919E-05 0.45582 0.00028413 623.3439904265035 108.53 0.13068 112.17 112.08 112.21 3.6355 18 13 2 0 0 0 0.65821 1 26672 26672 2.4985 1.0166 1 9082900 42006 8583 26545 26557 48164 48164 0.06125231126043218 SPRSLLITY 9 Unmodified _SPRSLLITY_ 0 0 0 REV__ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron REV__ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron MSMS UPN47_class_I_Rep_1 2 525.3029174804688 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 58.233 1 61.67 61.17 62.17 3.437 0 0 0 0.37692 1 13431 13431 6.2058 0.47393 1 + 42007 20656 26546 26558 48165 48165 0.06934315994385543 SPRTPKKPVN 10 Unmodified _SPRTPKKPVN_ 0 0 0 ENSG00000120278|ENST00000696526|PLEKHG1 ENSG00000120278|ENST00000696526|PLEKHG1 ENSG00000120278|ENST00000696526|PLEKHG1 MSMS UPN48_class_I_Rep_3 7 562.3349609375 2 562.332747 1122.65094 NaN NaN NaN NaN NaN NaN NaN 108.96 1 112.64 112.14 113.14 3.6751 0 0 0 0.53105 1 25850 25850 12.241 1.4167 1 42008 2317 26547 26559 48166 48166 0.09452212008568495 SPRTYLMHLK 10 Unmodified _SPRTYLMHLK_ 0 0 0 REV__LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|72|3|anti-sense REV__LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|72|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 623.3446655273438 2 623.342258 1244.66996 0.59388 0.00037019 0.63381 0.00039508 1.2277 0.00076527 623.3441265898298 108.51 0.0933 112.19 112.13 112.22 3.6751 20 9 5 0 0 0 0.55448 1 25692 25692 4.897 2.3985 1 7867400 + 42009 30769 26548 26560 48167 48167 0.05741425307951431 SPRTYLMHLK 10 Unmodified _SPRTYLMHLK_ 0 0 0 REV__LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|72|3|anti-sense REV__LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|72|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 623.342258 1244.66996 0.512 0.00031915 3.8502 0.0024 4.3622 0.0027192 623.3443790763147 108.55 0.099258 112.09 112.02 112.12 3.5382 -0.043706 0.00084293 NaN 4.897 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 7156600 + 42010 30769 26548 26560 0.05741425307951431 SPRTYLMHLK 10 Unmodified _SPRTYLMHLK_ 0 0 0 REV__LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|72|3|anti-sense REV__LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|72|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 623.342258 1244.66996 0.59388 0.00037019 0.63381 0.00039508 1.2277 0.00076527 623.3441265898298 108.51 0.0933 112.19 112.13 112.22 3.6751 0.055722 -0.0031669 NaN 4.897 20 9 5 NaN NaN NaN NaN 0 NaN NaN 0 7867400 + 42011 30769 26548 26560 0.05741425307951431 SPRWRELY 8 Unmodified _SPRWRELY_ 0 0 0 ENSG00000145416|ENST00000514618|MARCHF1 ENSG00000145416|ENST00000514618|MARCHF1 ENSG00000145416|ENST00000514618|MARCHF1 MSMS UPN47_class_I_Rep_2 3 553.7902221679688 2 553.790715 1105.56688 NaN NaN NaN NaN NaN NaN NaN 63.914 1 67.17 66.67 67.67 3.2556 0 0 0 0.40472 1 15191 15191 4.3292 0 1 42012 3394 26549 26561 48168 48168 0.018316809116640798 SPSKLASKPST 11 Unmodified _SPSKLASKPST_ 0 0 0 REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP MSMS UPN48_class_I_Rep_1 5 551.8087158203125 2 551.808771 1101.60299 NaN NaN NaN NaN NaN NaN NaN 31.098 1 34.632 34.132 35.132 3.5342 0 0 0 0.38417 1 4556 4556 2.4985 0 1 + 42013 17744 26550 26562 48169 48169 0.05625093297862804 SPSLPFPVV 9 Unmodified _SPSLPFPVV_ 0 0 0 HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|128|3|anti-sense HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|128|3|anti-sense HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|128|3|anti-sense MSMS UPN47_class_I_Rep_3 4 471.76654052734375 2 471.768386 941.522219 NaN NaN NaN NaN NaN NaN NaN 28.695 1 32.029 31.529 32.529 3.3337 0 0 0 0.38478 1 4537 4537 4.3292 0.38484 1 42014 8201 26551 26563 48170 48170 0.04911857045613033 SPSPRKRKRH 10 Unmodified _SPSPRKRKRH_ 0 0 0 nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000230246|P0DKV0|SPATA31C1 nc|ENSG00000230246|P0DKV0-2|SPATA31C1 nc|ENSG00000230246|P0DKV0-2|SPATA31C1 MSMS UPN46_class_I_Rep_3 1 624.8746948242188 2 624.873437 1247.73232 NaN NaN NaN NaN NaN NaN NaN 95.73 1 95.73 95.23 96.23 0 0 0 0 0.53105 1 23257 23257 3.2813 0 1 42015 16832 26552 26564 48171 48171 0.11836332491179746 SPSTQLWLCAC 11 Unmodified _SPSTQLWLCAC_ 0 0 0 REV__ENST00000291232.4_2_22:42321062-42321353:-|nuORF REV__ENST00000291232.4_2_22:42321062-42321353:-|nuORF MSMS UPN47_class_I_Rep_3 4 604.7757568359375 2 604.775559 1207.53657 NaN NaN NaN NaN NaN NaN NaN 27.024 1 30.366 29.866 30.866 3.3422 0 0 0 0.38417 1 4043 4043 1.3295 0.13619 1 + 42016 21640 26553 26565 48172 48172 -0.058901818600361366 SPSYLKDNFVG 11 Unmodified _SPSYLKDNFVG_ 0 0 0 L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 613.806396484375 2 613.806228 1225.5979 0.42074 0.00025825 -0.25304 -0.00015531 0.16771 0.00010294 613.8059828431801 62.856 0.67573 66.215 65.891 66.567 3.3595 119 46 3 0 0 0 0.28117 3 14845 14808;14845;14888 17.443 17.443 1 221010 42017 9743 26554 26566 48173;48174;48175 48174 -0.005872105647767967 SPSYLKDNFVG 11 Unmodified _SPSYLKDNFVG_ 0 0 0 L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 613.806640625 2 613.806228 1225.5979 0.42371 0.00026008 0.020593 1.264E-05 0.44431 0.00027272 613.8060568729467 63.088 0.87097 66.343 66.051 66.922 3.2558 110 61 3 0 0 0 0.54441 1 15018 15018 6.6304 2.1015 1 216640 42018 9743 26554 26566 48176 48176 -0.005872105647767967 SPSYLKDNFVG 11 Unmodified _SPSYLKDNFVG_ 0 0 0 L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense L1MA4_dup9020|chr17:5319663-5321027:+|2.5614737006284285|0.1957670582902032|3.71|151.0|95|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 613.8060913085938 2 613.806228 1225.5979 0.42347 0.00025993 0.015799 9.6973E-06 0.43927 0.00026963 613.8061137048556 63.161 0.86245 66.331 65.976 66.838 3.1698 124 61 4 0 0 0 0.42924 1 15065 15065 9.544 1.935 1 245410 42019 9743 26554 26566 48177 48177 -0.005872105647767967 SPTESVWAPTY 11 Unmodified _SPTESVWAPTY_ 0 0 0 REV__AluSx1_dup104070|chr19:7404957-7405257:-|1.8749759236046173|0.0085631584656358|7.77|151.0|9|2|sense REV__AluSx1_dup104070|chr19:7404957-7405257:-|1.8749759236046173|0.0085631584656358|7.77|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 619.2897338867188 2 619.290411 1236.56627 NaN NaN NaN NaN NaN NaN NaN 58.013 1 61.5 61 62 3.487 0 0 0 0.38417 1 12620 12620 1.1933 0 1 + 42020 17163 26555 26567 48178 48178 -0.0425520331871212 SPVDKVNKH 9 Unmodified _SPVDKVNKH_ 0 0 0 REV__L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|16|1|sense REV__L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|16|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 512.2823486328125 2 512.282723 1022.55089 -0.16635 -8.522E-05 -0.0010588 -5.4241E-07 -0.16741 -8.5763E-05 512.2825968423439 19.804 0.76372 19.804 19.383 20.146 0 108 77 2 0 0 0 0.48846 1 2012 2012 1.8442 0 1 74720 + 42021 26557 26556 26568 48179 48179 0.0405197467475773 SPVHGETSSF 10 Unmodified _SPVHGETSSF_ 0 0 0 REV__L1MEf_dup9516|chr14:104996821-104997726:+|1.0109480294203084|0.1249773438055772|3.02|151.0|38|1|anti-sense REV__L1MEf_dup9516|chr14:104996821-104997726:+|1.0109480294203084|0.1249773438055772|3.02|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.2406616210938 2 524.240721 1046.46689 -0.16285 -8.5374E-05 -0.23845 -0.000125 -0.4013 -0.00021038 524.2405378427912 38.264 0.68149 41.506 41.245 41.927 3.2414 93 50 2 0 0 0 0.51565 1 7380 7380 10.074 0 1 196470 + 42022 28700 26557 26569 48180 48180 -0.054486012128108996 SPVLAGRR 8 Unmodified _SPVLAGRR_ 0 0 0 ENST00000298316.6_1_14:50360028-50360277:+|nuORF ENST00000298316.6_1_14:50360028-50360277:+|nuORF ENST00000298316.6_1_14:50360028-50360277:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 428.2615661621094 2 428.261594 854.508634 0.052226 2.2366E-05 0.14281 6.1162E-05 0.19504 8.3528E-05 428.26170926181067 81.857 1.2124 85.369 84.885 86.097 3.5122 474 139 5 0 0 0 0.82752 1 20568 20568 0.69038 0 1 10895000 42023 6065 26558 26570 48181 48181 0.07556044057048439 SPVLARRT 8 Unmodified _SPVLARRT_ 0 0 0 L1MB8_dup14691|chr17:72800942-72801218:+|1.2118221087914487|0.0054353634876398|7.8|151.0|20|2|anti-sense L1MB8_dup14691|chr17:72800942-72801218:+|1.2118221087914487|0.0054353634876398|7.8|151.0|20|2|anti-sense L1MB8_dup14691|chr17:72800942-72801218:+|1.2118221087914487|0.0054353634876398|7.8|151.0|20|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 450.2753601074219 2 450.274701 898.534849 0.14917 6.7169E-05 0.32276 0.00014533 0.47193 0.0002125 450.27489768267225 86.067 0.39507 89.773 89.536 89.932 3.7058 64 43 2 0 0 0 0.82752 1 20513 20513 2.3027 0 1 183880 42024 10950 26559 26571 48182 48182 0.08152313228526964 SPVPGSVGPTP 11 Unmodified _SPVPGSVGPTP_ 0 0 0 L1PA6_dup4194|chr10:75515701-75521837:-|10.9505464623769|0.0574793887350666|7.57|151.0|46|2|sense L1PA6_dup4194|chr10:75515701-75521837:-|10.9505464623769|0.0574793887350666|7.57|151.0|46|2|sense L1PA6_dup4194|chr10:75515701-75521837:-|10.9505464623769|0.0574793887350666|7.57|151.0|46|2|sense MSMS UPN48_class_I_Rep_3 7 497.7654724121094 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 21.851 1 25.566 25.066 26.066 3.7144 0 0 0 0.38417 1 2130 2130 2.7352 0.89096 1 42025 14626 26560 26572 48183 48183 0.01609463689283075 SPVQDADRFY 10 Unmodified _SPVQDADRFY_ 0 0 0 nc|ENSG00000165300|O94991-2|SLITRK5;ENSG00000165300|ENST00000683689|SLITRK5 nc|ENSG00000165300|O94991-2|SLITRK5 nc|ENSG00000165300|O94991-2|SLITRK5 MSMS UPN47_class_I_Rep_2 3 599.686767578125 2 599.280377 1196.5462 NaN NaN NaN NaN NaN NaN NaN 59.107 1 62.389 61.889 62.889 3.2818 0 0 0 0.53105 1 13734 13734 3.5965 0 1 42026 4174 26561 26573 48184 48184 -0.044209542586713724 SPVSAVFHGCD 11 Unmodified _SPVSAVFHGCD_ 0 0 0 REV__ENSG00000275342|ENST00000615670|PRAG1 REV__ENSG00000275342|ENST00000615670|PRAG1 MSMS UPN48_class_I_Rep_2 6 559.74951171875 2 559.750398 1117.48624 NaN NaN NaN NaN NaN NaN NaN 89.867 1 93.614 93.114 94.114 3.7471 0 0 0 0.38417 1 21422 21422 1.1933 0.39971 1 + 42027 21430 26562 26574 48185 48185 -0.06779968193541208 SPVSLPLLG 9 Unmodified _SPVSLPLLG_ 0 0 0 Tigger1_dup10634|chr16:57551045-57553283:-|4.321977453989876|0.0138561293809903|8.29|151.0|55|3|sense Tigger1_dup10634|chr16:57551045-57553283:-|4.321977453989876|0.0138561293809903|8.29|151.0|55|3|sense Tigger1_dup10634|chr16:57551045-57553283:-|4.321977453989876|0.0138561293809903|8.29|151.0|55|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 441.253662109375 2 441.768386 881.522219 -0.19444 -8.5899E-05 4.0513 0.0017897 3.8569 0.0017038 441.7697285656486 56.481 0.14277 59.782 59.68 59.823 3.3009 9 6 2 0 0 0 0.12551 1 12910 12910 0 0 1 24808 42028 32993 26563 26575 48186 48186 0.07671857045636443 SPVVTYVCDL 10 Unmodified _SPVVTYVCDL_ 0 0 0 ENST00000546313.1_1_11:114167278-114168881:+|nuORF;ENSG00000166741|ENST00000299964|NNMT ENST00000546313.1_1_11:114167278-114168881:+|nuORF ENST00000546313.1_1_11:114167278-114168881:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 548.2734985351562 2 548.273175 1094.5318 0.33667 0.00018459 0.26648 0.0001461 0.60315 0.00033069 548.2732094598374 66.918 0.78761 66.918 66.512 67.3 0 196 82 3 0 0 0 0.35076 1 15189 15189 24.021 0 1 906640 42029 4260 26564 26576 48187 48187 -0.011687427311699139 SPVWPVFH 8 Unmodified _SPVWPVFH_ 0 0 0 LTR32_dup837|chr11:3931720-3932060:+|1.0561819825825705|0.0061990823128571|7.41|151.0|23|3|anti-sense LTR32_dup837|chr11:3931720-3932060:+|1.0561819825825705|0.0061990823128571|7.41|151.0|23|3|anti-sense LTR32_dup837|chr11:3931720-3932060:+|1.0561819825825705|0.0061990823128571|7.41|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_3 4 484.75360107421875 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 43.058 1 46.3 45.8 46.8 3.2419 0 0 0 0.40604 1 8897 8897 2.5775 0 1 42030 15618 26565 26577 48188 48188 0.006541234512383198 SPVWVGPQAY 10 Unmodified _SPVWVGPQAY_ 0 0 0 ENST00000537880.1_1_12:110353099-110354425:+|nuORF ENST00000537880.1_1_12:110353099-110354425:+|nuORF ENST00000537880.1_1_12:110353099-110354425:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 552.27978515625 2 552.279649 1102.54475 0.63006 0.00034797 -0.40723 -0.0002249 0.22283 0.00012307 552.27957472635 58.914 0.79 62.4 62.004 62.794 3.487 87 49 2 0 0 0 0.52562 1 12793 12793 8.7454 1.4562 1 226900 42031 7339 26566 26578 48189 48189 -0.0024254355676021078 SPVWVGPQAY 10 Unmodified _SPVWVGPQAY_ 0 0 0 ENST00000537880.1_1_12:110353099-110354425:+|nuORF ENST00000537880.1_1_12:110353099-110354425:+|nuORF ENST00000537880.1_1_12:110353099-110354425:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 552.2802124023438 2 552.279649 1102.54475 0.57922 0.00031989 -0.28713 -0.00015858 0.29209 0.00016131 552.2796858287854 58.84 0.74583 62.339 62.02 62.766 3.4987 82 45 2 0 0 0 0.52562 1 12771 12771 8.7454 2.0222 1 217710 42032 7339 26566 26578 48190 48190 -0.0024254355676021078 SPWVVLLNGC 10 Unmodified _SPWVVLLNGC_ 0 0 0 L1MB8_dup15249|chr19:7434792-7434919:-|2.0482725661663364|0.0093713343950573|7.77|151.0|1|1|sense L1MB8_dup15249|chr19:7434792-7434919:-|2.0482725661663364|0.0093713343950573|7.77|151.0|1|1|sense L1MB8_dup15249|chr19:7434792-7434919:-|2.0482725661663364|0.0093713343950573|7.77|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 544.2830810546875 2 544.283877 1086.5532 NaN NaN NaN NaN NaN NaN NaN 44.885 1 48.647 48.147 49.147 3.7617 0 0 0 0.53105 1 8606 8606 1.4819 0.51963 1 42033 10954 26567 26579 48191 48191 0.013386870882186486 SPYKQNIH 8 Unmodified _SPYKQNIH_ 0 0 0 REV__L1MDa_dup3573|chr9:92239039-92239553:-|1.0661908179785824|0.0413866296540234|4.69|151.0|9|2|sense REV__L1MDa_dup3573|chr9:92239039-92239553:-|1.0661908179785824|0.0413866296540234|4.69|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 493.7563781738281 2 493.756341 985.498129 NaN NaN NaN NaN NaN NaN NaN 30.987 1 34.299 33.799 34.799 3.3116 0 0 0 0.40643 1 5222 5222 2.0598 0 1 + 42034 27521 26568 26580 48192 48192 0.004800166119480309 SPYLRPLTL 9 Unmodified _SPYLRPLTL_ 0 0 0 ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14 ENST00000339418.9_1_14:105642869-105647546:-|nuORF ENST00000339418.9_1_14:105642869-105647546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.3126831054688 2 530.313492 1058.61243 0.36349 0.00019277 -0.48593 -0.0002577 -0.12244 -6.493E-05 530.3133982001103 58.89 0.40112 62.307 62.134 62.535 3.4171 38 25 2 0 0 0 0.098221 1 13647 13647 34.222 20.316 1 129880 42035 5024 26569 26581 48193 48193 0.08546906374044738 SPYLRPLTL 9 Unmodified _SPYLRPLTL_ 0 0 0 ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14 ENST00000339418.9_1_14:105642869-105647546:-|nuORF ENST00000339418.9_1_14:105642869-105647546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 530.3135375976562 2 530.313492 1058.61243 0.30131 0.00015979 -0.52304 -0.00027737 -0.22173 -0.00011758 530.3133473662692 59.252 0.65013 62.525 62.231 62.881 3.2731 69 45 2 0 0 0 0.16787 2 13761 13761;13812 23.801 13.002 1 128770 42036 5024 26569 26581 48194;48195 48194 0.08546906374044738 SPYLRPLTL 9 Unmodified _SPYLRPLTL_ 0 0 0 ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14 ENST00000339418.9_1_14:105642869-105647546:-|nuORF ENST00000339418.9_1_14:105642869-105647546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 530.3142700195312 2 530.313492 1058.61243 0.29215 0.00015493 0.10879 5.7695E-05 0.40095 0.00021263 530.3136016240502 59.338 0.50835 62.503 62.287 62.796 3.1651 49 35 2 0 0 0 0.36258 1 13925 13925 10.151 4.4187 1 96146 42037 5024 26569 26581 48196 48196 0.08546906374044738 SQADIKKAY 9 Unmodified _SQADIKKAY_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS UPN46_class_I_Rep_3 1 512.277099609375 2 512.277106 1022.53966 -0.11494 -5.8879E-05 0.099876 5.1164E-05 -0.01506 -7.7148E-06 512.7785285747278 22.112 0.21871 22.112 21.99 22.209 0 36 23 2 0 0 0 0.37599 1 2572 2572 9.3831 3.1773 1 57899 42038 2164 26570 26582 48197 48197 0.029291525806115715 SQANIAQVL 9 Unmodified _SQANIAQVL_ 0 0 0 nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.K538*|1|0.14|ENSG00000006125|chr17:35650603-35650604|-/A|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010-3|AP2B1 MULTI-MSMS UPN46_class_I_Rep_3 1 472.2638854980469 2 472.263999 942.513445 0.16665 7.8703E-05 -0.5035 -0.00023778 -0.33685 -0.00015908 472.2637395437019 59.628 0.35915 59.628 59.337 59.696 0 59 39 2 0 0 0 0.16799 2 13165 13165;13209 23.79 3.3752 1 474460 42039 714 26571 26583 48198;48199 48198 0.03988883409135724 SQARSDNHW 9 Unmodified _SQARSDNHW_ 0 0 0 ENST00000416893.2_1_X:82253937-82254204:+|nuORF ENST00000416893.2_1_X:82253937-82254204:+|nuORF ENST00000416893.2_1_X:82253937-82254204:+|nuORF MSMS UPN48_class_I_Rep_1 5 550.7495727539062 2 550.747036 1099.47952 NaN NaN NaN NaN NaN NaN NaN 72.88 1 76.354 75.854 76.854 3.4732 0 0 0 0.3967 1 17136 17136 1.4819 0.28856 1 42040 6655 26572 26584 48200 48200 -0.06624145029900319 SQASKLRASK 10 Unmodified _SQASKLRASK_ 0 0 0 nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1;nc|ENSG00000188878|Q8TES7-4|FBF1;nc|ENSG00000188878|Q8TES7-3|FBF1;ENST00000585990.5_1_17:73916156-73934230:-|nuORF nc|ENSG00000188878|Q8TES7-2|FBF1 nc|ENSG00000188878|Q8TES7-2|FBF1 MULTI-SECPEP UPN47_class_I_Rep_2 3 537.8134765625 2 538.314554 1074.61456 0.32185 0.00017326 0.41687 0.00022441 0.73872 0.00039766 538.3149168617593 66.527 0.43135 69.786 69.54 69.972 3.2588 41 29 2 0 0 0 0.84575 1 15924 15924 5.7319 0.43497 1 220540 42041 5261 26573 26585 48201 48201 0.0802333511182951 SQATNNFSY 9 Unmodified _SQATNNFSY_ 0 0 0 ENST00000278505.4_1_11:94862865-94863006:+|nuORF ENST00000278505.4_1_11:94862865-94863006:+|nuORF ENST00000278505.4_1_11:94862865-94863006:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 516.2261962890625 2 516.225071 1030.43559 0.2537 0.00013097 0.5163 0.00026653 0.77 0.0003975 516.2254866804219 46.435 1.2879 50.185 49.704 50.992 3.7494 233 90 4 0 0 0 0.43982 1 9277 9277 5.7319 0.50118 1 1919000 42042 6027 26574 26586 48202 48202 -0.07841174246891569 SQAVHIFRDG 10 Unmodified _SQAVHIFRDG_ 0 0 0 ENSG00000164010|ENST00000372517|ERMAP ENSG00000164010|ENST00000372517|ERMAP ENSG00000164010|ENST00000372517|ERMAP MULTI-MSMS UPN47_class_I_Rep_2 3 565.2904052734375 2 565.291079 1128.56761 0.046152 2.6089E-05 0.13095 7.4026E-05 0.1771 0.00010012 565.2910782885267 32.085 0.9535 35.554 35.158 36.111 3.4691 113 68 2 0 0 0 0.55448 1 5487 5487 4.897 1.9018 1 131330 42043 4066 26575 26587 48203 48203 0.008464755607064944 SQAVTLWDLAP 11 Unmodified _SQAVTLWDLAP_ 0 0 0 ENSG00000260734|ENST00000561754|TLE7 ENSG00000260734|ENST00000561754|TLE7 ENSG00000260734|ENST00000561754|TLE7 MSMS UPN47_class_I_Rep_1 2 600.8148193359375 2 600.816596 1199.61864 NaN NaN NaN NaN NaN NaN NaN 74.507 1 77.901 77.401 78.401 3.3937 0 0 0 0.38417 1 18341 18341 1.1933 0 1 42044 5781 26576 26588 48204 48204 0.02681379814907814 SQAWNADEDL 10 Unmodified _SQAWNADEDL_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS UPN48_class_I_Rep_1 5 574.2782592773438 2 574.746367 1147.47818 0.52982 0.00030451 0.29259 0.00016816 0.82241 0.00047268 574.7465537854781 58.596 0.48433 62.083 61.875 62.36 3.487 40 31 2 0 0 0 0.56374 1 12838 12838 1.1933 0 1 74966 42045 1314 26577 26589 48205 48205 -0.08965823909329629 SQAWNADEDL 10 Unmodified _SQAWNADEDL_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS UPN48_class_I_Rep_3 7 574.7471313476562 2 574.746367 1147.47818 0.42 0.00024139 0.30288 0.00017408 0.72288 0.00041547 574.7467515514728 58.438 0.55474 61.961 61.699 62.254 3.5231 42 36 2 0 0 0 0.56189 1 12735 12735 2.4985 0 1 116240 42046 1314 26577 26589 48206 48206 -0.08965823909329629 SQDDEGFVTL 10 Unmodified _SQDDEGFVTL_ 0 0 0 REV__nc|ENSG00000120925|Q96K19-4|RNF170 REV__nc|ENSG00000120925|Q96K19-4|RNF170 MSMS UPN48_class_I_Rep_3 7 555.7522583007812 2 555.751118 1109.48768 NaN NaN NaN NaN NaN NaN NaN 73.838 1 77.389 76.889 77.889 3.5505 0 0 0 0.53105 1 17290 17290 3.2813 0.28607 1 + 42047 18718 26578 26590 48207 48207 -0.06268055623786495 SQDPPADLH 9 Unmodified _SQDPPADLH_ 0 0 0 ENST00000474489.5_1_2:220402379-220402472:+|nuORF;ENST00000347842.7_2_2:220402379-220402749:+|nuORF ENST00000474489.5_1_2:220402379-220402472:+|nuORF ENST00000474489.5_1_2:220402379-220402472:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 490.22760009765625 2 490.227613 978.440674 -0.28878 -0.00014157 0.6464 0.00031688 0.35762 0.00017531 490.2278349629175 32.763 0.76808 36.476 36.173 36.941 3.7131 125 62 3 0 0 0 0.11683 1 5651 5651 30.637 0 1 307480 42048 6265 26579 26591 48208 48208 -0.04940870384291429 SQDPPADLH 9 Unmodified _SQDPPADLH_ 0 0 0 ENST00000474489.5_1_2:220402379-220402472:+|nuORF;ENST00000347842.7_2_2:220402379-220402749:+|nuORF ENST00000474489.5_1_2:220402379-220402472:+|nuORF ENST00000474489.5_1_2:220402379-220402472:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.22735595703125 2 490.227613 978.440674 -0.38716 -0.00018979 0.47715 0.00023391 0.089999 4.412E-05 490.22778236272677 33.111 0.98649 36.398 36.125 37.112 3.2867 138 75 2 0 0 0 0.23293 2 5845 5845;5917 18.146 0 1 364180 42049 6265 26579 26591 48209;48210 48209 -0.04940870384291429 SQDQKFIQ 8 Unmodified _SQDQKFIQ_ 0 0 0 REV__nc|ENSG00000137812|Q8NG31-3|KNL1 REV__nc|ENSG00000137812|Q8NG31-3|KNL1 MULTI-MSMS UPN47_class_I_Rep_3 4 497.2634582519531 2 497.253631 992.49271 0.0032664 1.6242E-06 0.10499 5.2206E-05 0.10826 5.383E-05 497.25364907231165 45.055 0.81224 48.299 47.969 48.781 3.2441 82 55 2 0 0 0 0.82752 1 9612 9612 3.9444 0 1 149040 + 42050 19246 26580 26592 48211 48211 -0.003837069705241447 SQEFHQYRY 9 Unmodified _SQEFHQYRY_ 0 0 0 REV__THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|100|3|anti-sense REV__THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|100|3|anti-sense MSMS UPN48_class_I_Rep_3 7 629.2855224609375 2 629.285994 1256.55744 NaN NaN NaN NaN NaN NaN NaN 25.312 1 29.081 28.581 29.581 3.769 0 0 0 0.39518 1 3058 3058 1.8442 0 1 + 42051 32253 26581 26593 48212 48212 -0.06058132164525887 SQEHMLTLCF 10 Unmodified _SQEHMLTLCF_ 0 0 0 Tigger1_dup10604|chr16:46597423-46599730:-|1.1858581670150783|0.0924537713112255|3.68|150.0|1|1|sense Tigger1_dup10604|chr16:46597423-46599730:-|1.1858581670150783|0.0924537713112255|3.68|150.0|1|1|sense Tigger1_dup10604|chr16:46597423-46599730:-|1.1858581670150783|0.0924537713112255|3.68|150.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 604.787353515625 2 604.775559 1207.53657 NaN NaN NaN NaN NaN NaN NaN 23.322 1 26.766 26.266 27.266 3.4447 0 0 0 0.53105 1 2920 2920 1.3295 0.13619 1 42052 32988 26582 26594 48213 48213 -0.05890181860058874 SQEMSRNEQ 9 Unmodified _SQEMSRNEQ_ 0 0 0 REV__L1MD_dup700|chr2:24264732-24264957:-|1.1053986293450029|0.3926060254382567|1.49|151.0|5|2|sense REV__L1MD_dup700|chr2:24264732-24264957:-|1.1053986293450029|0.3926060254382567|1.49|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 554.68603515625 2 554.738019 1107.46149 NaN NaN NaN NaN NaN NaN NaN 115.88 1 119.35 118.85 119.85 3.462 0 0 0 0.38478 1 28508 28508 4.3292 0 1 + 42053 27278 26583 26595 48214 48214 -0.08794648066918853 SQEPAVCLSF 10 Unmodified _SQEPAVCLSF_ 0 0 0 nc|ENSG00000140839|Q6UXF7-2|CLEC18B;ENST00000569268.5_1_16:70208157-70217386:+|nuORF;ENST00000569201.6_1_16:70208088-70217386:+|nuORF nc|ENSG00000140839|Q6UXF7-2|CLEC18B nc|ENSG00000140839|Q6UXF7-2|CLEC18B MSMS UPN47_class_I_Rep_1 2 540.7532348632812 2 540.755149 1079.49575 NaN NaN NaN NaN NaN NaN NaN 44.386 1 48.081 47.581 48.581 3.6951 0 0 0 0.53105 1 9223 9223 15.248 0.66679 1 42054 7506 26584 26596 48215 48215 -0.04082199908043549 SQEWWHAPV 9 Unmodified _SQEWWHAPV_ 0 0 0 AluJr_dup23664|chr5:131289839-131290146:-|1.12053976019688|0.0030139817385593|8.54|151.0|8|2|sense AluJr_dup23664|chr5:131289839-131290146:-|1.12053976019688|0.0030139817385593|8.54|151.0|8|2|sense AluJr_dup23664|chr5:131289839-131290146:-|1.12053976019688|0.0030139817385593|8.54|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.266845703125 2 570.267073 1138.51959 0.45547 0.00025974 -0.93553 -0.0005335 -0.48006 -0.00027376 570.76792755116 75.147 0.36339 78.46 78.256 78.62 3.3127 62 34 2 0 0 0 0.43982 1 18561 18561 5.7319 0.50118 1 122810 42055 138 26585 26597 48216 48216 -0.044125983593630735 SQEYTDSTGI 10 Unmodified _SQEYTDSTGI_ 0 0 0 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21;ENST00000552428.6_1_12:57691628-57693946:-|nuORF;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000048991|Q15032-2|R3HDM1 nc|ENSG00000172995|Q9UBL0-4|ARPP21 MULTI-MSMS UPN47_class_I_Rep_1 2 550.740966796875 2 550.740751 1099.46695 0.4469 0.00024612 -0.2032 -0.00011191 0.2437 0.00013422 550.7407471351132 59.832 1.1571 63.23 62.806 63.963 3.3982 210 86 4 0 0 0 0.31818 5 13850 13808;13850;13891;13931;13971 27.629 21.537 1 1539300 42056 4604;900 26586 26598 48217;48218;48219;48220;48221 48218 -0.07880646003468428 SQEYTDSTGI 10 Unmodified _SQEYTDSTGI_ 0 0 0 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21;ENST00000552428.6_1_12:57691628-57693946:-|nuORF;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000048991|Q15032-2|R3HDM1 nc|ENSG00000172995|Q9UBL0-4|ARPP21 MULTI-MSMS UPN47_class_I_Rep_2 3 550.7412109375 2 550.740751 1099.46695 0.47936 0.000264 -0.17715 -9.7565E-05 0.30221 0.00016644 550.740678039302 59.917 1.1429 63.191 62.946 64.089 3.2731 232 83 4 0 0 0 0.21236 7 14021 13930;13941;13982;14021;14061;14101;14145 49.933 49.933 1 1348900 42057 4604;900 26586 26598 48222;48223;48224;48225;48226;48227;48228 48225 -0.07880646003468428 SQEYTDSTGI 10 Unmodified _SQEYTDSTGI_ 0 0 0 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21;ENST00000552428.6_1_12:57691628-57693946:-|nuORF;ENST00000551465.1_1_12:57691871-57704220:-|nuORF;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000048991|Q15032-2|R3HDM1 nc|ENSG00000172995|Q9UBL0-4|ARPP21 MULTI-MSMS UPN47_class_I_Rep_3 4 550.7410888671875 2 550.740751 1099.46695 0.36023 0.00019839 -0.12977 -7.147E-05 0.23046 0.00012692 550.7407836306112 60.063 1.1839 63.228 62.9 64.084 3.1651 238 88 5 0 0 0 0.30625 4 14134 14006;14049;14093;14134 31.268 31.268 1 1754400 42058 4604;900 26586 26598 48229;48230;48231;48232 48232 -0.07880646003468428 SQFFQHCFLT 10 Unmodified _SQFFQHCFLT_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|248|2|anti-sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|248|2|anti-sense MSMS UPN48_class_I_Rep_2 6 629.2904052734375 2 629.289691 1256.56483 NaN NaN NaN NaN NaN NaN NaN 31.959 1 35.6 35.1 36.1 3.641 0 0 0 0.53105 1 4877 4877 3.2813 0 1 + 42059 23309 26587 26599 48233 48233 -0.053191158884601464 SQFGGGSQY 9 Unmodified _SQFGGGSQY_ 0 0 0 nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-3|EIF3D nc|ENSG00000100353|O15371-3|EIF3D MULTI-SECPEP UPN46_class_I_Rep_3 1 465.70098876953125 2 465.701232 929.38791 0.11084 5.1619E-05 -0.16292 -7.5873E-05 -0.052081 -2.4254E-05 465.7010612851752 36.473 0.62401 36.473 36.246 36.87 0 92 53 3 0 0 0 0.043825 1 6768 6768 42.312 16.913 1 325980 42060 1498 26588 26600 48234 48234 -0.07960828447096446 SQFGTVTRF 9 Unmodified _SQFGTVTRF_ 0 0 0 ENST00000477693.1_1_2:122488402-122494426:-|nuORF;ENSG00000155438|ENST00000285814|NIFK ENST00000477693.1_1_2:122488402-122494426:-|nuORF ENST00000477693.1_1_2:122488402-122494426:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 521.7694702148438 2 521.769448 1041.52434 0.27436 0.00014315 0.21679 0.00011312 0.49115 0.00025627 521.7693897253777 50.147 0.41124 50.147 49.777 50.188 0 101 43 3 0 0 0 0.0059098 3 10539 10498;10539;10576 100.71 58.869 1 919340 42061 3702 26589 26601 48235;48236;48237 48236 0.005242857834218739 SQFPQPQHF 9 Unmodified _SQFPQPQHF_ 0 0 0 ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK MSMS UPN46_class_I_Rep_3 1 558.2667236328125 2 558.267073 1114.51959 NaN NaN NaN NaN NaN NaN NaN 47.78 1 47.78 47.28 48.28 0 0 0 0 0.3377 1 9906 9906 8.7454 0 1 42062 3277 26590 26602 48238 48238 -0.03308598359330972 SQFPQPQHF 9 Unmodified _SQFPQPQHF_ 0 0 0 ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK MSMS UPN46_class_I_Rep_3 1 558.2669677734375 2 558.267073 1114.51959 NaN NaN NaN NaN NaN NaN NaN 47.803 1 47.803 47.303 48.303 0 0 0 0 0.28608 1 9913 9913 11.495 3.8858 1 42063 3277 26590 26602 48239 48239 -0.03308598359330972 SQFRSASTSF 10 Unmodified _SQFRSASTSF_ 0 0 0 REV__nc|ENSG00000151835|Q9NZJ4-2|SACS REV__nc|ENSG00000151835|Q9NZJ4-2|SACS MSMS UPN47_class_I_Rep_2 3 559.2688598632812 2 559.26727 1116.51999 NaN NaN NaN NaN NaN NaN NaN 31.964 1 35.434 34.934 35.934 3.4691 0 0 0 0.53105 1 5479 5479 1.3295 0.63916 1 + 42064 19667 26591 26603 48240 48240 -0.0336122343014722 SQFVSLSPFN 10 Unmodified _SQFVSLSPFN_ 0 0 0 REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|242|3|anti-sense REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|242|3|anti-sense MSMS UPN48_class_I_Rep_2 6 563.2838745117188 2 563.282389 1124.55022 NaN NaN NaN NaN NaN NaN NaN 50.962 1 54.63 54.13 55.13 3.6679 0 0 0 0.53105 1 10457 10457 2.7352 0 1 + 42065 23564 26592 26604 48241 48241 -0.007068647649475679 SQGFTAIVL 9 Unmodified _SQGFTAIVL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS UPN47_class_I_Rep_1 2 468.2626647949219 2 468.263468 934.512382 -0.32164 -0.00015061 -0.27439 -0.00012849 -0.59602 -0.0002791 468.2632803435563 36.693 0.45174 40.362 40.154 40.606 3.6692 59 38 2 0 0 0 0.43982 1 6865 6865 5.7319 0 1 118880 42066 3585 26593 26605 48242 48242 0.04250669040209232 SQGGVVKF 8 Unmodified _SQGGVVKF_ 0 0 0 REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 411.2288513183594 2 411.229428 820.444303 -0.14418 -5.929E-05 -1.0052 -0.00041335 -1.1493 -0.00047264 411.22883699752566 107.63 0.13199 111.26 111.19 111.32 3.6313 45 17 3 0 0 0 0.72333 1 25946 25946 2.5775 1.8871 1 4355000 + 42067 31549 26594 26606 48243 48243 0.026898441802472917 SQGGVVKF 8 Unmodified _SQGGVVKF_ 0 0 0 REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 411.229428 820.444303 0.094834 3.8999E-05 -1.3414 -0.00055162 -1.2466 -0.00051263 411.2286918836973 107.66 0.15411 111.33 111.27 111.43 3.6724 0.05833 6.6615E-05 NaN 2.5775 49 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2121500 + 42068 31549 26594 26606 0.026898441802472917 SQGGVVKF 8 Unmodified _SQGGVVKF_ 0 0 0 REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 411.229428 820.444303 -0.41216 -0.00016949 -1.6122 -0.00066297 -2.0243 -0.00083246 411.22881301933455 107.64 0.11704 111.17 111.15 111.27 3.5345 -0.10221 -0.00015607 NaN 2.5775 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2307900 + 42069 31549 26594 26606 0.026898441802472917 SQGGVVKF 8 Unmodified _SQGGVVKF_ 0 0 0 REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 411.229428 820.444303 -0.61074 -0.00025115 -1.0343 -0.00042534 -1.645 -0.00067649 411.2289657351257 107.67 0.11 111.2 111.14 111.25 3.5382 -0.072346 0.00031919 NaN 2.5775 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2463400 + 42070 31549 26594 26606 0.026898441802472917 SQGGVVKF 8 Unmodified _SQGGVVKF_ 0 0 0 REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 411.229428 820.444303 0.082175 3.3793E-05 -1.7351 -0.00071353 -1.6529 -0.00067974 411.2286164886102 107.67 0.12316 111.34 111.28 111.41 3.6783 0.068179 -0.0002572 NaN 2.5775 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3710500 + 42071 31549 26594 26606 0.026898441802472917 SQGGVVKF 8 Unmodified _SQGGVVKF_ 0 0 0 REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense REV__MER6A_dup731|chr11:34449616-34450184:-|2.2759369735658828|0.1041794842962048|4.45|151.0|26|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 411.229428 820.444303 0.096565 3.971E-05 -1.442 -0.000593 -1.3454 -0.00055328 411.2287826606587 107.66 0.13324 111.34 111.29 111.42 3.6813 0.065213 -1.6127E-05 NaN 2.5775 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4205200 + 42072 31549 26594 26606 0.026898441802472917 SQHEKTHT 8 Unmodified _SQHEKTHT_ 0 0 0 ENSG00000128000|ENST00000434248|ZNF780B ENSG00000128000|ENST00000434248|ZNF780B ENSG00000128000|ENST00000434248|ZNF780B MULTI-MSMS UPN46_class_I_Rep_3 1 484.23284912109375 2 484.23323 966.451907 -0.26807 -0.00012981 0.28329 0.00013718 0.015221 7.3705E-06 484.2332817267425 16.924 1.3004 16.924 16.622 17.922 0 286 156 3 0 0 0 0.82752 2 1191 1191;1224 20.454 0 1 171910 42073 2581 26595 26607 48244;48245 48244 -0.032660482901405885 SQIDQVEKRI 10 Unmodified _SQIDQVEKRI_ 0 0 0 L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 405.8947448730469 3 405.894577 1214.6619 0.10392 4.2179E-05 -0.11947 -4.849E-05 -0.015549 -6.3114E-06 405.8945205442229 28.611 0.50659 32.242 31.972 32.479 3.6311 83 55 2 0 0 0 0.53513 1 3976 3976 7.4771 0 1 75411 42074 14790 26596 26608 48246 48246 0.0631556959219779 SQIDQVEKRI 10 Unmodified _SQIDQVEKRI_ 0 0 0 L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 405.894577 1214.6619 -0.06656 -2.7016E-05 0.09266 3.761E-05 0.0261 1.0594E-05 405.89457032032226 28.635 0.29615 32.193 32.09 32.387 3.5571 0.0087935 0.00022872 NaN 7.4771 39 30 2 NaN NaN NaN NaN 0 NaN NaN 0 53915 42075 14790 26596 26608 0.0631556959219779 SQIDQVEKRI 10 Unmodified _SQIDQVEKRI_ 0 0 0 L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense L1PA7_dup2610|chr3:152371612-152373773:-|7.299958625456724|0.1088784844975225|6.07|151.0|15|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 405.894577 1214.6619 0.10392 4.2179E-05 -0.11947 -4.849E-05 -0.015549 -6.3114E-06 405.8945205442229 28.611 0.50659 32.242 31.972 32.479 3.6311 0.058744 -2.958E-05 NaN 7.4771 83 55 2 NaN NaN NaN NaN 0 NaN NaN 0 75411 42076 14790 26596 26608 0.0631556959219779 SQIIKGLDP 9 Unmodified _SQIIKGLDP_ 0 0 0 REV__ENST00000520639.1_1_5:153873348-153873642:+|nuORF REV__ENST00000520639.1_1_5:153873348-153873642:+|nuORF MSMS UPN46_class_I_Rep_3 1 485.78167724609375 2 485.782025 969.549496 NaN NaN NaN NaN NaN NaN NaN 108.01 1 108.01 107.51 108.51 0 0 0 0 0.38478 1 26369 26369 4.3292 0 1 + 42077 22783 26597 26609 48247 48247 0.0635034058598194 SQIQNLETL 9 Unmodified _SQIQNLETL_ 0 0 0 L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|84|3|sense L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|84|3|sense L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|84|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.2799682617188 2 523.279846 1044.54514 0.33256 0.00017402 -0.36079 -0.00018879 -0.028226 -1.477E-05 523.2795405051729 39.924 0.55501 43.665 43.474 44.029 3.7413 69 54 2 0 0 0 0.31407 1 7121 7121 13.042 0 1 149920 42078 11740 26598 26610 48248 48248 0.02464831372435583 SQIQNLETL 9 Unmodified _SQIQNLETL_ 0 0 0 L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|84|3|sense L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|84|3|sense L1MC5a_dup3722|chr3:158534627-158536829:+|1.356729179787186|0.2474950102275896|2.45|151.0|84|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 523.279846 1044.54514 0.33062 0.00017301 4.5914 0.0024026 4.922 0.0025756 523.2826535845643 39.818 0.054321 43.473 43.439 43.493 3.6557 -0.1764 0.0052649 NaN 13.042 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 48878 42079 11740 26598 26610 0.02464831372435583 SQIQVYYQ 8 Unmodified _SQIQVYYQ_ 0 0 0 REV__L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|26|2|sense REV__L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|26|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 515.2473754882812 2 514.756007 1027.49746 0.26821 0.00013806 -0.37499 -0.00019303 -0.10678 -5.4964E-05 514.755777801601 49.066 0.3126 52.3 52.134 52.447 3.2345 25 17 2 0 0 0 0.72333 1 10700 10700 0.45834 0 1 59899 + 42080 26089 26599 26611 48249 48249 -0.015188228277793314 SQIYPFYY 8 Unmodified _SQIYPFYY_ 0 0 0 MLT1H1_dup109|chr1:93318528-93319066:-|1.8071790777246497|0.106421495955755|4.09|151.0|29|2|anti-sense MLT1H1_dup109|chr1:93318528-93319066:-|1.8071790777246497|0.106421495955755|4.09|151.0|29|2|anti-sense MLT1H1_dup109|chr1:93318528-93319066:-|1.8071790777246497|0.106421495955755|4.09|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_2 3 540.763427734375 2 540.755475 1079.4964 NaN NaN NaN NaN NaN NaN NaN 44.972 1 48.328 47.828 48.828 3.3556 0 0 0 0.30027 1 9432 9432 32.117 0 1 42081 16436 26600 26612 48250 48250 -0.040170371966723906 SQKAVVQAR 9 Unmodified _SQKAVVQAR_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN46_class_I_Rep_3 1 493.7906494140625 2 493.790715 985.566878 -0.30095 -0.00014861 0.031855 1.573E-05 -0.26909 -0.00013288 493.79060904551744 13.801 0.23492 13.801 13.7 13.935 0 38 25 2 0 0 0 0.32682 2 460 460;491 12.241 5.8866 1 38745 42082 2735 26601 26613 48251;48252 48251 0.07351680911665426 SQKDAYEL 8 Unmodified _SQKDAYEL_ 0 0 0 L1MC5a_dup2416|chr2:196152428-196152945:+|4.000773052599518|0.0657677251652449|5.93|151.0|12|2|sense L1MC5a_dup2416|chr2:196152428-196152945:+|4.000773052599518|0.0657677251652449|5.93|151.0|12|2|sense L1MC5a_dup2416|chr2:196152428-196152945:+|4.000773052599518|0.0657677251652449|5.93|151.0|12|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 476.7295227050781 2 477.232364 952.450176 0.23538 0.00011233 -1.6313 -0.00077849 -1.3959 -0.00066616 477.2316960679902 83.94 0.038254 87.352 87.337 87.375 3.4116 7 4 2 0 0 0 0.72333 1 20937 20937 2.0598 0.40713 1 38221 42083 11734 26602 26614 48253 48253 -0.027951020987757147 SQKFTLRF 8 Unmodified _SQKFTLRF_ 0 0 0 L1MB7_dup2954|chr2:135457046-135458455:-|1.107423614197775|0.0190061420413139|5.86|151.0|87|2|anti-sense L1MB7_dup2954|chr2:135457046-135458455:-|1.107423614197775|0.0190061420413139|5.86|151.0|87|2|anti-sense L1MB7_dup2954|chr2:135457046-135458455:-|1.107423614197775|0.0190061420413139|5.86|151.0|87|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.793212890625 2 513.790184 1025.56581 NaN NaN NaN NaN NaN NaN NaN 30.822 1 34.364 33.864 34.864 3.542 0 0 0 0.40472 1 4478 4478 4.3292 0 1 42084 10821 26603 26615 48254 48254 0.05405466542742943 SQKGQESEY 9 Unmodified _SQKGQESEY_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS UPN46_class_I_Rep_3 1 528.2352294921875 2 528.235635 1054.45672 -0.27126 -0.00014329 0.19147 0.00010114 -0.079788 -4.2147E-05 528.2357055905345 14.151 0.41092 14.151 14.021 14.432 0 65 47 2 0 0 0 0.24411 1 555 555 17.443 7.3687 1 74658 42085 1983 26604 26616 48255 48255 -0.06833208938041935 SQKKINKWTT 10 Unmodified _SQKKINKWTT_ 0 0 0 L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|213|3|sense L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|213|3|sense L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|213|3|sense MSMS UPN48_class_I_Rep_1 5 617.3494262695312 2 617.351137 1232.68772 NaN NaN NaN NaN NaN NaN NaN 69.859 1 73.318 72.818 73.818 3.4598 0 0 0 0.53105 1 16236 16236 2.9952 0.49676 1 42086 15157 26605 26617 48256 48256 0.08068463834456452 SQKKKVIIA 9 Unmodified _SQKKKVIIA_ 0 0 0 nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176 nc|ENSG00000166073|Q14439-2|GPR176 nc|ENSG00000166073|Q14439-2|GPR176 MULTI-MSMS UPN48_class_I_Rep_1 5 507.8363342285156 2 507.837134 1013.65972 0.22037 0.00011191 0.019001 9.6496E-06 0.23937 0.00012156 507.83708253863995 45.297 0.65284 48.813 48.546 49.199 3.5162 64 47 2 0 0 0 0.47763 1 8753 8753 2.9952 0 1 169550 42087 4215 26606 26618 48257 48257 0.15343185645042468 SQKKLRKKSI 10 Unmodified _SQKKLRKKSI_ 0 0 0 nc|ENSG00000188931|Q5VTH2|CFAP126 nc|ENSG00000188931|Q5VTH2|CFAP126 nc|ENSG00000188931|Q5VTH2|CFAP126 MSMS UPN47_class_I_Rep_3 4 405.9327697753906 3 405.934706 1214.78229 NaN NaN NaN NaN NaN NaN NaN 33.511 1 36.786 36.286 37.286 3.2748 0 0 0 0.53105 1 5983 5983 0.62683 0 1 42088 16787 26607 26619 48258 48258 0.18349022376446555 SQKLIQGIY 9 Unmodified _SQKLIQGIY_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|27|2|sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|27|2|sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 525.30419921875 2 525.303124 1048.5917 0.16761 8.8045E-05 -0.2447 -0.00012854 -0.077087 -4.0494E-05 525.3029092504713 57.624 1.1943 60.915 60.456 61.65 3.2912 177 92 3 0 0 0 0.32682 1 13441 13441 12.241 2.8575 1 365140 42089 13804 26608 26620 48259 48259 0.06934315994362805 SQKLIQGIY 9 Unmodified _SQKLIQGIY_ 0 0 0 L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|27|2|sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|27|2|sense L1PA13_dup8520|chr19:57759267-57760959:+|1.0263080708079055|0.207575991856637|2.31|151.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.302978515625 2 525.303124 1048.5917 0.24404 0.00012819 0.72289 0.00037974 0.96693 0.00050793 525.3034486297499 58.265 0.33904 61.431 61.33 61.669 3.1658 32 20 2 0 0 0 0.31407 1 13559 13559 13.042 2.243 1 126370 42090 13804 26608 26620 48260 48260 0.06934315994362805 SQKLLLKRNC 10 Unmodified _SQKLLLKRNC_ 0 0 0 L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|41|2|sense L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|41|2|sense L1PA15_dup1679|chr3:185036844-185039255:-|1.189328379676947|0.0615948487852196|4.27|150.0|41|2|sense MSMS UPN48_class_I_Rep_3 7 601.8579711914062 2 601.855532 1201.69651 NaN NaN NaN NaN NaN NaN NaN 95.211 1 99.112 98.612 99.612 3.9016 0 0 0 0.53105 1 22569 22569 1.6526 0 1 42091 13879 26609 26621 48261 48261 0.10373114199319389 SQKPVMVKR 9 Oxidation (M) _SQKPVM(Oxidation (M))VKR_ SQKPVM(1)VKR SQKPVM(73)VKR 0 0 1 ENSG00000108107|ENST00000344063|RPL28;ENST00000560583.5_1_19:55899571-55899697:+|nuORF;ENST00000412461.2_1_22:19043875-19044022:+|nuORF ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS UPN46_class_I_Rep_3 1 544.8158569335938 2 544.815876 1087.6172 -0.22489 -0.00012253 0.10232 5.5746E-05 -0.12257 -6.678E-05 544.815846411246 13.199 0.9094 13.199 13.079 13.989 0 190 105 4 0 0 0 0.006828 1 332 332 72.968 34.792 1 891590 42092 1853 26610 26622 48262 48262 54 0.07689467245154447 SQKRHALV 8 Unmodified _SQKRHALV_ 0 0 0 REV__HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|82|3|sense REV__HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|82|3|sense MSMS UPN47_class_I_Rep_3 4 469.7787780761719 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 84.194 1 87.556 87.056 88.056 3.3615 0 0 0 0.40738 1 21128 21128 0.79363 0 1 + 42093 23819 26611 26623 48263 48263 0.07447715602779681 SQKRHALV 8 Unmodified _SQKRHALV_ 0 0 0 REV__HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|82|3|sense REV__HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|82|3|sense MSMS UPN48_class_I_Rep_2 6 469.7790222167969 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 84.044 1 87.725 87.225 88.225 3.6814 0 0 0 0.40738 1 19995 19995 0.79363 0 1 + 42094 23819 26611 26623 48264 48264 0.07447715602779681 SQKRLSLQACK 11 Unmodified _SQKRLSLQACK_ 0 0 0 REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.3539428710938 2 631.355896 1260.69724 NaN NaN NaN NaN NaN NaN NaN 72.87 1 76.25 75.75 76.75 3.3799 0 0 0 0.38417 1 17858 17858 2.7352 0.89096 1 + 42095 22392 26612 26624 48265 48265 0.07731908848359126 SQKSITVF 8 Unmodified _SQKSITVF_ 0 0 0 L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 455.25506591796875 2 455.255643 908.496732 0.0243 1.1063E-05 -0.97552 -0.00044411 -0.95122 -0.00043305 455.25507445440735 107.76 0.15005 111.39 111.33 111.48 3.6313 28 13 3 0 0 0 0.72333 1 25987 25987 9.3474 0 1 5933100 42096 12781 26613 26625 48266 48266 0.03882382523170236 SQKSITVF 8 Unmodified _SQKSITVF_ 0 0 0 L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 455.255643 908.496732 0.08911 4.0568E-05 -1.2085 -0.00055018 -1.1194 -0.00050961 455.2550365130068 107.77 0.090347 111.31 111.25 111.34 3.5345 -0.064288 -6.4948E-05 NaN 9.3474 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2556200 42097 12781 26613 26625 0.03882382523170236 SQKSITVF 8 Unmodified _SQKSITVF_ 0 0 0 L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 455.255643 908.496732 -0.1227 -5.5859E-05 -1.3385 -0.00060938 -1.4612 -0.00066523 455.25512868006393 107.77 0.071716 111.3 111.26 111.33 3.5382 -0.067094 -0.00018334 NaN 9.3474 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2906500 42098 12781 26613 26625 0.03882382523170236 SQKSITVF 8 Unmodified _SQKSITVF_ 0 0 0 L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 455.255643 908.496732 0.16547 7.5332E-05 -1.2523 -0.00057011 -1.0868 -0.00049478 455.2550225629617 107.74 0.092201 111.42 111.37 111.46 3.6783 0.048477 -0.00010482 NaN 9.3474 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4742500 42099 12781 26613 26625 0.03882382523170236 SQKSITVF 8 Unmodified _SQKSITVF_ 0 0 0 L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense L1ME3Cz_dup5293|chr7:77944028-77945057:+|3.0934235858100045|0.4986194332341941|2.63|151.0|66|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 455.255643 908.496732 0.17496 7.9651E-05 -1.16 -0.00052811 -0.98508 -0.00044846 455.25511329070093 107.75 0.12259 111.43 111.36 111.49 3.6813 0.060564 -2.0815E-05 NaN 9.3474 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 4929700 42100 12781 26613 26625 0.03882382523170236 SQKTKSLRA 9 Unmodified _SQKTKSLRA_ 0 0 0 REV__L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|184|3|sense REV__L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|184|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 510.3428039550781 2 509.803823 1017.59309 0.25179 0.00012837 -0.41082 -0.00020944 -0.15903 -8.1074E-05 509.80348863872075 77.82 1.4648 81.249 80.053 81.518 3.4289 180 137 2 0 0 0 0.12408 1 19113 19113 2.9952 2.9952 1 322210 + 42101 30360 26614 26626 48267 48267 0.08499950083125896 SQKVKQRT 8 Unmodified _SQKVKQRT_ 0 0 0 MER72_dup566|chr11:57735511-57736183:-|1.1534063954769862|0.156689526250926|2.88|151.0|51|3|anti-sense MER72_dup566|chr11:57735511-57736183:-|1.1534063954769862|0.156689526250926|2.88|151.0|51|3|anti-sense MER72_dup566|chr11:57735511-57736183:-|1.1534063954769862|0.156689526250926|2.88|151.0|51|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7904052734375 2 487.790715 973.566878 0.26458 0.00012906 -0.043388 -2.1164E-05 0.22119 0.00010789 487.7906325045779 77.856 0.38815 77.856 77.755 78.143 0 79 42 2 0 0 0 0.82752 1 18247 18247 1.8442 0 1 275440 42102 16202 26615 26627 48268 48268 0.0790368091164737 SQLDMDYR 8 Unmodified _SQLDMDYR_ 0 0 0 REV__L1MEf_dup4791|chr7:5338004-5338447:+|2.355912279661424|0.0023238146641375|9.99|150.0|2|1|sense REV__L1MEf_dup4791|chr7:5338004-5338447:+|2.355912279661424|0.0023238146641375|9.99|150.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 514.2283935546875 2 514.229299 1026.44404 -0.00064712 -3.3277E-07 -0.75786 -0.00038972 -0.75851 -0.00039005 514.2290864269864 27.152 0.66707 27.152 26.897 27.564 0 103 55 3 0 0 0 0.82752 1 4086 4086 3.5965 0 1 135970 + 42103 28645 26616 26628 48269 48269 -0.06811943601951498 SQLNITIHK 9 Unmodified _SQLNITIHK_ 0 0 0 REV__L1MB2_dup1621|chr3:149940682-149941889:-|1.6613491765845303|0.0613613391736425|4.76|151.0|49|1|anti-sense REV__L1MB2_dup1621|chr3:149940682-149941889:-|1.6613491765845303|0.0613613391736425|4.76|151.0|49|1|anti-sense MSMS UPN46_class_I_Rep_3 1 527.3054809570312 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 94.172 1 94.172 93.672 94.672 0 0 0 0 0.39518 1 22841 22841 1.8442 0 1 + 42104 25703 26617 26629 48270 48270 0.07364834225882078 SQLRKQSRR 9 Unmodified _SQLRKQSRR_ 0 0 0 REV__ENST00000562562.1_1_16:23706236-23712034:-|nuORF REV__ENST00000562562.1_1_16:23706236-23712034:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 580.3461303710938 2 579.844345 1157.67414 0.40419 0.00023437 0.052667 3.0539E-05 0.45685 0.0002649 579.8443450903954 93.578 0.45816 97.198 96.991 97.449 3.6208 68 53 2 0 0 0 0.50015 1 22495 22495 0.6015 0 1 135220 + 42105 19099 26618 26630 48271 48271 0.10160650845887176 SQLVANMYC 9 Unmodified _SQLVANMYC_ 0 0 0 REV__ENSG00000134588|ENST00000511190|USP26 REV__ENSG00000134588|ENST00000511190|USP26 MSMS UPN46_class_I_Rep_3 1 514.7218017578125 2 514.73062 1027.44669 NaN NaN NaN NaN NaN NaN NaN 26.507 1 26.507 26.007 27.007 0 0 0 0 0.2408 1 3801 3801 13.906 1.3745 1 + 42106 19104 26619 26631 48272 48272 -0.06593811468633248 SQNFPIKARS 10 Unmodified _SQNFPIKARS_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;ENST00000465196.5_1_13:96635825-96665653:-|nuORF ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS UPN47_class_I_Rep_3 4 574.3140869140625 2 574.314554 1146.61456 -0.4405 -0.00025299 -0.32322 -0.00018563 -0.76372 -0.00043862 574.3144895026053 12.676 0.30577 16.05 15.885 16.191 3.3734 64 39 2 0 0 0 0.55448 1 118 118 4.897 0.36815 1 44211 42107 1620 26620 26632 48273 48273 0.04711335111824155 SQNRVAEF 8 Unmodified _SQNRVAEF_ 0 0 0 ENST00000592001.5_1_19:38865430-38871817:+|nuORF;ENSG00000099341|ENST00000215071|PSMD8 ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 475.73797607421875 2 475.738148 949.461744 0.042038 1.9999E-05 -0.064225 -3.0554E-05 -0.022187 -1.0555E-05 475.7379461600911 32.151 0.61067 32.151 31.915 32.526 0 62 44 2 0 0 0 0.82752 1 5461 5461 24.021 3.5669 1 59517 42108 1438 26621 26633 48274 48274 -0.015008602847615293 SQNTGSQALS 10 Unmodified _SQNTGSQALS_ 0 0 0 HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|18|2|sense HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|18|2|sense HAL1_dup2058|chr2:19965223-19966129:-|1.0063779510724096|0.2109960090795086|2.25|146.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 496.73638916015625 2 496.735803 991.457052 NaN NaN NaN NaN NaN NaN NaN 26.981 1 30.48 29.98 30.98 3.4986 0 0 0 0.53105 1 3983 3983 2.4985 0.43874 1 42109 7864 26622 26634 48275 48275 -0.03901789218173235 SQPEDVLYY 9 Unmodified _SQPEDVLYY_ 0 0 0 nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF nc|ENSG00000109680|Q8N5T2-2|TBC1D19 nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MSMS UPN47_class_I_Rep_2 3 557.2595825195312 2 557.258579 1112.50261 NaN NaN NaN NaN NaN NaN NaN 31.695 1 35.164 34.664 35.664 3.4691 0 0 0 0.39518 1 5397 5397 1.8442 0.19162 1 42110 1902 26623 26635 48276 48276 -0.049145637558240196 SQPEESYCLVV 11 Unmodified _SQPEESYCLVV_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MULTI-MSMS UPN47_class_I_Rep_1 2 627.29052734375 2 627.289553 1252.56455 0.42512 0.00026667 0.82059 0.00051475 1.2457 0.00078142 627.2901850527613 64.06 0.44901 67.415 67.312 67.761 3.3557 65 41 2 0 0 0 0.50573 1 15268 15268 7.609 0.88579 1 95617 42111 3837 26624 26636 48277 48277 -0.05162580398996397 SQPLLLLYQ 9 Unmodified _SQPLLLLYQ_ 0 0 0 Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|72|1|anti-sense Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|72|1|anti-sense Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|72|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 537.8126831054688 2 537.813325 1073.6121 0.50868 0.00027358 -0.84287 -0.0004533 -0.33418 -0.00017973 537.8126791760315 109.09 0.1606 112.7 112.61 112.77 3.6046 19 9 4 0 0 0 0.46434 1 26858 26858 4.3292 0 1 1242900 42112 33087 26625 26637 48278 48278 0.07823486654183398 SQPYGQQSY 9 Unmodified _SQPYGQQSY_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MULTI-MSMS UPN46_class_I_Rep_3 1 529.233154296875 2 529.232896 1056.45124 0.16944 8.9674E-05 -0.24279 -0.00012849 -0.073351 -3.882E-05 529.2329059824606 34.259 0.83001 34.259 33.975 34.805 0 157 59 4 0 0 0 0.016816 1 6054 6054 65.474 27.298 1 422060 42113 1337 26626 26638 48279 48279 -0.07472887729841204 SQQANSHGTY 10 Unmodified _SQQANSHGTY_ 0 0 0 Arthur1B_dup339|chr2:199800405-199801310:-|1.1484650834679235|0.0578839454492775|4.31|148.0|58|3|anti-sense Arthur1B_dup339|chr2:199800405-199801310:-|1.1484650834679235|0.0578839454492775|4.31|148.0|58|3|anti-sense Arthur1B_dup339|chr2:199800405-199801310:-|1.1484650834679235|0.0578839454492775|4.31|148.0|58|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 546.7395629882812 2 546.738877 1091.4632 -0.048513 -2.6524E-05 -0.15209 -8.3152E-05 -0.2006 -0.00010968 546.7387656537127 22.054 0.30544 22.054 21.928 22.234 0 50 33 2 0 0 0 0.56189 1 2578 2578 2.4985 0.19575 1 46835 42114 407 26627 26639 48280 48280 -0.07887270986657313 SQQWKKAGR 9 Unmodified _SQQWKKAGR_ 0 0 0 L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|139|3|sense L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|139|3|sense L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|139|3|sense MSMS UPN46_class_I_Rep_3 1 544.8154907226562 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 13.479 1 13.479 12.979 13.979 0 0 0 0 0.38784 1 394 394 3.5965 0 1 42115 14479 26628 26640 48281 48281 0.048384856602069704 SQREFPES 8 Unmodified _SQREFPES_ 0 0 0 L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|17|2|sense L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|17|2|sense L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|17|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.2279968261719 2 490.227613 978.440674 -0.38716 -0.00018979 0.47715 0.00023391 0.089999 4.412E-05 490.22778236272677 33.111 0.98649 36.398 36.125 37.112 3.2867 138 75 2 0 0 0 0.82752 1 6021 6021 3.9444 0 1 364180 42116 9858 26629 26641 48282 48282 -0.04940870384291429 SQRIQRPGR 9 Unmodified _SQRIQRPGR_ 0 0 0 ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.31884765625 2 549.317963 1096.62137 0.48941 0.00026884 0.89789 0.00049323 1.3873 0.00076207 549.3185965036466 91.725 0.29342 95.488 95.378 95.672 3.7629 57 40 2 0 0 0 0.48846 1 21840 21840 1.8442 0.19162 1 328300 42117 7318 26630 26642 48283 48283 0.0769269278309821 SQRIQRPGR 9 Unmodified _SQRIQRPGR_ 0 0 0 ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 549.317963 1096.62137 0.39631 0.0002177 0.5164 0.00028367 0.91271 0.00050137 549.3185898633867 95.567 0.030121 95.567 95.548 95.578 0 0.038922 -6.683E-05 NaN 1.8442 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 216600 42118 7318 26630 26642 0.0769269278309821 SQRIQRPGR 9 Unmodified _SQRIQRPGR_ 0 0 0 ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 549.317963 1096.62137 0.48941 0.00026884 0.89789 0.00049323 1.3873 0.00076207 549.3185965036466 91.725 0.29342 95.488 95.378 95.672 3.7629 -0.040014 0.00035229 NaN 1.8442 57 40 2 NaN NaN NaN NaN 0 NaN NaN 0 328300 42119 7318 26630 26642 0.0769269278309821 SQRKKIHYF 9 Unmodified _SQRKKIHYF_ 0 0 0 L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|14|1|sense L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|14|1|sense L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|14|1|sense MSMS UPN47_class_I_Rep_2 3 603.84033203125 2 603.840739 1205.66693 NaN NaN NaN NaN NaN NaN NaN 33.18 1 36.635 36.135 37.135 3.4547 0 0 0 0.40038 1 5845 5845 0.6015 0 1 42120 13406 26631 26643 48284 48284 0.07231918245452107 SQRLFVFLCV 10 Unmodified _SQRLFVFLCV_ 0 0 0 REV__AluSp_dup15969|chr5:177625228-177625537:-|1.2782077261992832|0.3459111679084398|1.89|150.0|16|2|anti-sense REV__AluSp_dup15969|chr5:177625228-177625537:-|1.2782077261992832|0.3459111679084398|1.89|150.0|16|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 404.5888366699219 3 404.55836 1210.65325 0.0069638 2.8172E-06 0.44696 0.00018082 0.45392 0.00018364 404.5584719689661 38.857 0.064224 42.513 42.488 42.552 3.6557 10 7 2 0 0 0 0.84575 1 6725 6725 3.5871 0.26742 1 53996 + 42121 17106 26632 26644 48285 48285 0.05634924422020049 SQRLRVVL 8 Unmodified _SQRLRVVL_ 0 0 0 ENST00000509842.5_3_3:141087607-141088725:+|nuORF ENST00000509842.5_3_3:141087607-141088725:+|nuORF ENST00000509842.5_3_3:141087607-141088725:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.81231689453125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 82.95 1 86.488 85.988 86.988 3.5386 0 0 0 0.40643 1 20734 20734 2.0598 0 1 42122 7175 26633 26645 48286 48286 0.12232861670997863 SQRRLRRRWAR 11 Unmodified _SQRRLRRRWAR_ 0 0 0 ENST00000378616.3_1_X:37553591-37553678:+|nuORF ENST00000378616.3_1_X:37553591-37553678:+|nuORF ENST00000378616.3_1_X:37553591-37553678:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 514.31005859375 3 514.310052 1539.90833 -0.28316 -0.00014563 0.69422 0.00035705 0.41106 0.00021141 514.310183906435 12.708 0.091644 12.708 12.685 12.777 0 7 5 2 0 0 0 0.68478 1 190 190 0.094841 0 1 33347 42123 6472 26634 26646 48287 48287 0.15996966725106176 SQRRNFKRN 9 Unmodified _SQRRNFKRN_ 0 0 0 L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense MSMS UPN47_class_I_Rep_1 2 603.3350830078125 2 603.334144 1204.65374 NaN NaN NaN NaN NaN NaN NaN 49.997 1 53.626 53.126 54.126 3.6285 0 0 0 0.39518 1 10925 10925 1.8442 0 1 42124 11839 26635 26647 48288 48288 0.05959480186083965 SQRRNFKRN 9 Unmodified _SQRRNFKRN_ 0 0 0 L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense MSMS UPN47_class_I_Rep_2 3 603.2769165039062 2 603.334144 1204.65374 NaN NaN NaN NaN NaN NaN NaN 50.535 1 53.878 53.378 54.378 3.3431 0 0 0 0.38639 1 11116 11116 3.9444 2.1002 1 42125 11839 26635 26647 48289 48289 0.05959480186083965 SQRRNFKRN 9 Unmodified _SQRRNFKRN_ 0 0 0 L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense MSMS UPN47_class_I_Rep_3 4 603.335205078125 2 603.334144 1204.65374 NaN NaN NaN NaN NaN NaN NaN 50.599 1 53.815 53.315 54.315 3.2163 0 0 0 0.39518 1 11192 11192 1.8442 0 1 42126 11839 26635 26647 48290 48290 0.05959480186083965 SQRRNFKRN 9 Unmodified _SQRRNFKRN_ 0 0 0 L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense L1MCa_dup6372|chr15:82747824-82749087:+|1.736843031670399|0.178087955379379|3.29|151.0|26|2|sense MSMS UPN48_class_I_Rep_1 5 603.3348388671875 2 603.334144 1204.65374 NaN NaN NaN NaN NaN NaN NaN 47.618 1 51.14 50.64 51.64 3.5219 0 0 0 0.39518 1 9429 9429 1.8442 0 1 42127 11839 26635 26647 48291 48291 0.05959480186083965 SQRSRIPLR 9 Unmodified _SQRSRIPLR_ 0 0 0 L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|44|2|anti-sense L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|44|2|anti-sense L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|44|2|anti-sense MSMS UPN46_class_I_Rep_3 1 556.7913208007812 2 556.835988 1111.65742 NaN NaN NaN NaN NaN NaN NaN 49.706 1 49.706 49.206 50.206 0 0 0 0 0.3967 1 10452 10452 1.4819 0 1 42128 12313 26636 26648 48292 48292 0.1060614995992637 SQSEKRVKTW 10 Unmodified _SQSEKRVKTW_ 0 0 0 REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|63|3|sense REV__L1PA16_dup4355|chr5:34142458-34144860:+|1.7591373950162197|0.0693328127800062|4.67|151.0|63|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 624.8375244140625 2 624.838394 1247.66223 -0.074558 -4.6587E-05 -0.34783 -0.00021733 -0.42238 -0.00026392 624.8381087533221 12.947 0.4553 16.396 16.288 16.743 3.45 75 41 4 0 0 0 0.55448 1 189 189 4.897 0.36815 1 254320 + 42129 29375 26637 26649 48293 48293 0.04830989312040401 SQSHLFMG 8 Unmodified _SQSHLFMG_ 0 0 0 L1MB3_dup497|chr1:55116181-55117446:+|2.652933863250349|0.1538512134352545|4.11|151.0|65|2|anti-sense L1MB3_dup497|chr1:55116181-55117446:+|2.652933863250349|0.1538512134352545|4.11|151.0|65|2|anti-sense L1MB3_dup497|chr1:55116181-55117446:+|2.652933863250349|0.1538512134352545|4.11|151.0|65|2|anti-sense MSMS UPN46_class_I_Rep_3 1 453.7093505859375 2 453.710545 905.406537 NaN NaN NaN NaN NaN NaN NaN 82.486 1 82.486 81.986 82.986 0 0 0 0 0.40738 1 19544 19544 0.79363 0 1 42130 10432 26638 26650 48294 48294 -0.04994990076875183 SQSKSMILT 9 Unmodified _SQSKSMILT_ 0 0 0 ENSG00000075884|ENST00000295095|ARHGAP15;ENST00000552641.5_1_2:143913059-144194625:+|nuORF ENSG00000075884|ENST00000295095|ARHGAP15 ENSG00000075884|ENST00000295095|ARHGAP15 MSMS UPN48_class_I_Rep_3 7 497.7650451660156 2 497.765517 993.516481 NaN NaN NaN NaN NaN NaN NaN 33.336 1 37.025 36.525 37.525 3.6896 0 0 0 0.39598 1 5169 5169 1.6526 0 1 42131 1151 26639 26651 48295 48295 0.019463904716417346 SQSLGLVSKSK 11 Unmodified _SQSLGLVSKSK_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS UPN47_class_I_Rep_1 2 567.3305053710938 2 567.32987 1132.64519 0.42169 0.00023924 0.021634 1.2274E-05 0.44332 0.00025151 567.329812850314 82.243 0.35793 85.755 85.615 85.973 3.5122 58 42 2 0 0 0 0.66277 1 20510 20510 2.086 0.24177 1 78278 42132 882 26640 26652 48296 48296 0.08417068706239661 SQSLYQLFM 9 Unmodified _SQSLYQLFM_ 0 0 0 REV__ENSG00000198841|ENST00000371614|KTI12 REV__ENSG00000198841|ENST00000371614|KTI12 MSMS UPN48_class_I_Rep_1 5 558.774169921875 2 558.773342 1115.53213 NaN NaN NaN NaN NaN NaN NaN 60.468 1 63.941 63.441 64.441 3.4737 0 0 0 0.38784 1 13378 13378 3.5965 0.70727 1 + 42133 21154 26641 26653 48297 48297 -0.021013230113112513 SQSNQTTLC 9 Unmodified _SQSNQTTLC_ 0 0 0 REV__HERVL40-int_dup296|chr4:151111841-151112162:+|1.3305449948586532|0.0351838262746014|5.24|151.0|10|3|sense REV__HERVL40-int_dup296|chr4:151111841-151112162:+|1.3305449948586532|0.0351838262746014|5.24|151.0|10|3|sense MSMS UPN47_class_I_Rep_1 2 491.22723388671875 2 491.218931 980.423309 NaN NaN NaN NaN NaN NaN NaN 16.146 1 19.643 19.143 20.143 3.4968 0 0 0 0.39598 1 984 984 1.6526 0 1 + 42134 23916 26642 26654 48298 48298 -0.06768533981596647 SQSSLRSSY 9 Unmodified _SQSSLRSSY_ 0 0 0 nc|ENSG00000120913|Q96JY6-2|PDLIM2;ENST00000491330.1_1_8:22442376-22443056:+|nuORF;nc|ENSG00000120913|Q96JY6-4|PDLIM2;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2 nc|ENSG00000120913|Q96JY6-2|PDLIM2 nc|ENSG00000120913|Q96JY6-2|PDLIM2 MULTI-MSMS UPN46_class_I_Rep_3 1 507.7458801269531 2 507.74617 1013.47779 -0.050517 -2.565E-05 -0.23349 -0.00011856 -0.28401 -0.0001442 507.7458978883472 25.119 0.71191 25.119 24.916 25.628 0 119 67 3 0 0 0 0.13455 1 3394 3394 27.223 6.8087 1 82427 42135 16675 26643 26655 48299 48299 -0.028411988385187215 SQSTRTATF 9 Unmodified _SQSTRTATF_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS UPN46_class_I_Rep_3 1 499.74957275390625 2 499.748713 997.482873 -0.063778 -3.1873E-05 -2.0855 -0.0010422 -2.1493 -0.0010741 499.74874672088066 24.912 0.3049 24.912 24.761 25.066 0 38 31 2 0 0 0 0.31407 1 3347 3347 13.042 1.4022 1 33696 42136 1484 26644 26656 48300 48300 -0.015968949759098905 SQSYLSPFLY 10 Unmodified _SQSYLSPFLY_ 0 0 0 REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|123|1|anti-sense REV__L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|123|1|anti-sense MSMS UPN47_class_I_Rep_1 2 602.7955932617188 2 602.797872 1203.58119 NaN NaN NaN NaN NaN NaN NaN 70.332 1 73.703 73.203 74.203 3.3713 0 0 0 0.53105 1 17087 17087 7.609 0.31972 1 + 42137 24019 26645 26657 48301 48301 -0.012457114507014921 SQTQKAKFS 9 Unmodified _SQTQKAKFS_ 0 0 0 ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL ENSG00000111404|ENST00000538724|RERGL ENSG00000111404|ENST00000538724|RERGL MULTI-MSMS UPN47_class_I_Rep_3 4 512.7748413085938 2 512.774731 1023.53491 -0.23589 -0.00012096 -0.0042438 -2.1761E-06 -0.24013 -0.00012313 512.7746561774516 37.97 0.6016 41.212 40.956 41.558 3.2414 92 46 3 0 0 0 0.30497 3 7329 7329;7369;7413 13.615 3.4643 1 148500 42138 1972 26646 26658 48302;48303;48304 48302 0.02408268437852712 SQTQKAKFS 9 Unmodified _SQTQKAKFS_ 0 0 0 ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL ENSG00000111404|ENST00000538724|RERGL ENSG00000111404|ENST00000538724|RERGL MULTI-MSMS UPN48_class_I_Rep_2 6 512.7752685546875 2 512.774731 1023.53491 0.29166 0.00014956 -0.23235 -0.00011914 0.059311 3.0413E-05 512.7744020666447 37.696 0.49448 41.412 41.161 41.655 3.7164 69 50 3 0 0 0 0.47763 1 6538 6538 2.9952 0 1 95634 42139 1972 26646 26658 48305 48305 0.02408268437852712 SQTQKAKFS 9 Unmodified _SQTQKAKFS_ 0 0 0 ENSG00000111404|ENST00000538724|RERGL;nc|ENSG00000111404|Q9H628|RERGL ENSG00000111404|ENST00000538724|RERGL ENSG00000111404|ENST00000538724|RERGL MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 512.774731 1023.53491 0.21903 0.00011231 -0.29008 -0.00014875 -0.071051 -3.6433E-05 512.7745690449526 37.72 0.47817 41.379 41.137 41.615 3.6595 0.031881 -0.00017874 NaN 13.615 76 50 2 NaN NaN NaN NaN 0 NaN NaN 0 89555 42140 1972 26646 26658 0.02408268437852712 SQVKAGKRT 9 Unmodified _SQVKAGKRT_ 0 0 0 REV__LTR26D_dup25|chr3:128779861-128780373:-|1.5266388473183523|0.0170383705753272|6.49|151.0|27|2|anti-sense REV__LTR26D_dup25|chr3:128779861-128780373:-|1.5266388473183523|0.0170383705753272|6.49|151.0|27|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.79071044921875 2 487.790715 973.566878 0.26628 0.00012989 0.067058 3.271E-05 0.33334 0.0001626 487.7906714115299 78.47 0.25169 78.47 78.415 78.667 0 46 24 2 0 0 0 0.49187 1 18424 18424 1.4819 0 1 327110 + 42141 30892 26647 26659 48306 48306 0.0790368091164737 SQVQKEIYI 9 Unmodified _SQVQKEIYI_ 0 0 0 Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 554.306640625 2 554.305864 1106.59717 NaN NaN NaN NaN NaN NaN NaN 69.23 1 72.597 72.097 73.097 3.3678 0 0 0 0.32573 1 16762 16762 9.3831 0 1 42142 552 26648 26660 48307 48307 0.048139947861727705 SQVQKEIYI 9 Unmodified _SQVQKEIYI_ 0 0 0 Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 554.3059692382812 2 554.305864 1106.59717 NaN NaN NaN NaN NaN NaN NaN 69.366 1 72.734 72.234 73.234 3.3678 0 0 0 0.27207 1 16803 16803 12.241 0 1 42143 552 26648 26660 48308 48308 0.048139947861727705 SQVQKEIYI 9 Unmodified _SQVQKEIYI_ 0 0 0 Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 554.3057250976562 2 554.305864 1106.59717 NaN NaN NaN NaN NaN NaN NaN 69.49 1 72.858 72.358 73.358 3.3678 0 0 0 0.18866 1 16841 16841 17.113 0 1 42144 552 26648 26660 48309 48309 0.048139947861727705 SQVQKEIYI 9 Unmodified _SQVQKEIYI_ 0 0 0 Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 554.3059692382812 2 554.305864 1106.59717 0.40251 0.00022312 -0.35243 -0.00019536 0.050082 2.7761E-05 554.3056034890395 69.795 0.74416 73.071 72.622 73.366 3.2761 117 62 2 0 0 0 0.32682 5 16917 16875;16917;16957;16994;17032 12.241 0 1 208810 42145 552 26648 26660 48310;48311;48312;48313;48314 48311 0.048139947861727705 SQVQKEIYI 9 Unmodified _SQVQKEIYI_ 0 0 0 Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense Cheshire_dup540|chr9:33842383-33842890:-|1.3264669316251745|0.0048367456227941|8.1|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.3057861328125 2 554.305864 1106.59717 0.44295 0.00024553 -0.34691 -0.00019229 0.096046 5.3239E-05 554.3055303748595 69.709 0.74385 72.913 72.675 73.419 3.2044 107 58 2 0 0 0 0.38714 3 17123 16963;17085;17123 8.7454 0 1 208980 42146 552 26648 26660 48315;48316;48317 48317 0.048139947861727705 SQVWWPAP 8 Unmodified _SQVWWPAP_ 0 0 0 AluY_dup18647|chr3:50038550-50038861:+|1.306953894077988|0.0639052227565405|4.35|151.0|7|2|sense AluY_dup18647|chr3:50038550-50038861:+|1.306953894077988|0.0639052227565405|4.35|151.0|7|2|sense AluY_dup18647|chr3:50038550-50038861:+|1.306953894077988|0.0639052227565405|4.35|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 485.7434387207031 2 485.742702 969.470852 NaN NaN NaN NaN NaN NaN NaN 32.696 1 36.223 35.723 36.723 3.5266 0 0 0 0.40738 1 5002 5002 0.79363 0 1 42147 393 26649 26661 48318 48318 -0.015104669284369265 SQWVASPLLL 10 Unmodified _SQWVASPLLL_ 0 0 0 L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|49|3|sense L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|49|3|sense L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|49|3|sense MSMS UPN48_class_I_Rep_1 5 557.3211059570312 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 98.572 1 102.18 101.68 102.68 3.6065 0 0 0 0.53105 1 23789 23789 1.3295 0.13619 1 42148 8676 26650 26662 48319 48319 0.07118889028470221 SRALRLYI 8 Unmodified _SRALRLYI_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MSMS UPN48_class_I_Rep_1 5 496.3041687011719 2 496.306001 990.597449 NaN NaN NaN NaN NaN NaN NaN 87.578 1 91.197 90.697 91.697 3.6187 0 0 0 0.40746 1 20987 20987 0.69038 0 1 + 42149 17887 26651 26663 48320 48320 0.10177459296676261 SRAPKPYLPLP 11 Unmodified _SRAPKPYLPLP_ 0 0 0 REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF MSMS UPN48_class_I_Rep_1 5 619.869384765625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 86.344 1 89.957 89.457 90.457 3.613 0 0 0 0.38417 1 20686 20686 1.1933 0.23107 1 + 42150 23215 26652 26664 48321 48321 0.10894242219501393 SRAPKPYLPLP 11 Unmodified _SRAPKPYLPLP_ 0 0 0 REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF REV__ENST00000602101.6_1_19:15568751-15575169:-|nuORF MSMS UPN48_class_I_Rep_1 5 619.8697509765625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 86.71 1 90.323 89.823 90.823 3.613 0 0 0 0.38417 1 20777 20777 2.9952 0.26005 1 + 42151 23215 26652 26664 48322 48322 0.10894242219501393 SRARCCKMWA 10 Unmodified _SRARCCKMWA_ 0 0 0 THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|80|3|anti-sense THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|80|3|anti-sense THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 606.2847290039062 2 606.283363 1210.55217 NaN NaN NaN NaN NaN NaN NaN 77.262 1 80.772 80.272 81.272 3.5102 0 0 0 0.53105 1 18379 18379 1.3295 0.25807 1 42152 32957 26653 26665 48323 48323 -0.044681738239887636 SRARLSLPKQL 11 Unmodified _SRARLSLPKQL_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MSMS UPN48_class_I_Rep_2 6 634.89306640625 2 634.893503 1267.77245 0.49752 0.00031587 -0.63262 -0.00040164 -0.13509 -8.577E-05 634.8927554006209 98.012 0.34964 101.79 101.47 101.82 3.779 102 48 3 0 0 0 0.48412 1 23274 23274 8.1555 0 1 699890 42153 1954 26654 26666 48324 48324 0.14927834371087556 SRCDLILVL 9 Unmodified _SRCDLILVL_ 0 0 0 L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|81|1|anti-sense L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|81|1|anti-sense L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|81|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.30078125 2 516.299527 1030.5845 NaN NaN NaN NaN NaN NaN NaN 65.012 1 68.492 67.992 68.992 3.4792 0 0 0 0.38784 1 14745 14745 3.5965 0 1 42154 10995 26655 26667 48325 48325 0.07043260122304673 SRCLPFIQL 9 Unmodified _SRCLPFIQL_ 0 0 0 HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|213|3|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|213|3|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|213|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 538.8028564453125 2 538.799694 1075.58484 0.4518 0.00024343 -0.75798 -0.0004084 -0.30617 -0.00016497 538.7992132685567 81.175 0.89613 84.499 84.194 85.09 3.3231 144 100 2 0 0 0 0.057664 4 20426 20413;20426;20463;20465 45.7 0 1 592000 42155 8274 26656 26668 48326;48327;48328;48329 48327 0.050066798421539715 SRDLSFKL 8 Unmodified _SRDLSFKL_ 0 0 0 nc|ENSG00000104755|Q99965-2|ADAM2;ENSG00000104755|ENST00000265708|ADAM2 nc|ENSG00000104755|Q99965-2|ADAM2 nc|ENSG00000104755|Q99965-2|ADAM2 MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7710876464844 2 483.274367 964.53418 0.21411 0.00010348 -3.1551 -0.0015248 -2.941 -0.0014213 483.2724635018978 65.307 0.10094 65.307 65.288 65.389 0 12 10 2 0 0 0 0.72333 1 14769 14769 3.9444 1.3669 1 65347 42156 1701 26657 26669 48330 48330 0.05049473788801606 SRDMRFVH 8 Unmodified _SRDMRFVH_ 0 0 0 nc|ENSG00000160185|P57075-2|UBASH3A;ENSG00000160185|ENST00000319294|UBASH3A;nc|ENSG00000160185|P57075-3|UBASH3A nc|ENSG00000160185|P57075-2|UBASH3A nc|ENSG00000160185|P57075-2|UBASH3A MSMS UPN48_class_I_Rep_2 6 524.261962890625 2 524.261268 1046.50798 NaN NaN NaN NaN NaN NaN NaN 40.493 1 44.234 43.734 44.734 3.7413 0 0 0 0.40604 1 7294 7294 2.5775 1.0956 1 42157 3858 26658 26670 48331 48331 -0.01341118654318052 SREAVLIDPV 10 Unmodified _SREAVLIDPV_ 0 0 0 ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1 ENST00000595115.1_1_19:44030583-44031338:-|nuORF ENST00000595115.1_1_19:44030583-44031338:-|nuORF MSMS UPN48_class_I_Rep_1 5 549.8297729492188 2 549.811313 1097.60807 NaN NaN NaN NaN NaN NaN NaN 64.245 1 67.703 67.203 68.203 3.4578 0 0 0 0.53105 1 14529 14529 10.824 0.75 1 42158 1758 26659 26671 48332 48332 0.06317397160455585 SREFHRKYR 9 Unmodified _SREFHRKYR_ 0 0 0 ENSG00000109846|ENST00000650687|CRYAB ENSG00000109846|ENST00000650687|CRYAB ENSG00000109846|ENST00000650687|CRYAB MSMS UPN46_class_I_Rep_3 1 639.8445434570312 2 639.844345 1277.67414 NaN NaN NaN NaN NaN NaN NaN 103.62 1 103.62 103.12 104.12 0 0 0 0 0.4007 1 25282 25282 0.52476 0 1 42159 1913 26660 26672 48333 48333 0.0464065084588583 SREIKELYT 9 Unmodified _SREIKELYT_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 569.80859375 2 569.808771 1137.60299 0.47894 0.0002729 -0.17679 -0.00010074 0.30215 0.00017217 569.8086118699217 28.161 0.56669 31.718 31.46 32.026 3.5571 73 57 2 0 0 0 0.47493 3 3764 3701;3764;3783 3.2813 0 1 85903 + 42160 29441 26661 26673 48334;48335;48336 48335 0.03969093297860127 SREIKELYT 9 Unmodified _SREIKELYT_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 569.8094482421875 2 569.808771 1137.60299 0.50955 0.00029035 -0.71381 -0.00040673 -0.20425 -0.00011639 569.8084329704135 28.203 0.5633 31.834 31.626 32.189 3.6311 75 59 2 0 0 0 0.40701 3 3846 3825;3846;3897 7.609 0 1 109890 + 42161 29441 26661 26673 48337;48338;48339 48338 0.03969093297860127 SREIKELYT 9 Unmodified _SREIKELYT_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 569.8101196289062 2 569.808771 1137.60299 NaN NaN NaN NaN NaN NaN NaN 27.876 1 31.631 31.131 32.131 3.7555 0 0 0 0.38073 1 3717 3717 5.2969 0 1 + 42162 29441 26661 26673 48340 48340 0.03969093297860127 SREIKELYT 9 Unmodified _SREIKELYT_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 569.808837890625 2 569.808771 1137.60299 NaN NaN NaN NaN NaN NaN NaN 27.989 1 31.731 31.231 32.231 3.7424 0 0 0 0.35904 1 3748 3748 7.609 0 1 + 42163 29441 26661 26673 48341 48341 0.03969093297860127 SREIKELYT 9 Unmodified _SREIKELYT_ 0 0 0 REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense REV__L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 569.8076782226562 2 569.808771 1137.60299 NaN NaN NaN NaN NaN NaN NaN 28.164 1 31.907 31.407 32.407 3.7424 0 0 0 0.35904 1 3796 3796 7.609 0 1 + 42164 29441 26661 26673 48342 48342 0.03969093297860127 SREIRHLGWL 10 Unmodified _SREIRHLGWL_ 0 0 0 ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1 ENST00000519177.5_1_8:121583594-121823792:-|nuORF ENST00000519177.5_1_8:121583594-121823792:-|nuORF MSMS UPN48_class_I_Rep_1 5 633.8571166992188 2 633.856921 1265.69929 NaN NaN NaN NaN NaN NaN NaN 33.204 1 36.725 36.225 37.225 3.5201 0 0 0 0.53105 1 5148 5148 0.45834 0 1 42165 4563 26662 26674 48343 48343 0.07706705648456591 SRERRGAEGCT 11 Unmodified _SRERRGAEGCT_ 0 0 0 MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|4|1|sense MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|4|1|sense MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 611.2910766601562 2 611.291285 1220.56802 0.43401 0.00026531 0.039544 2.4173E-05 0.47355 0.00028948 611.2907205162192 61.351 1.0299 64.732 64.305 65.335 3.3815 211 77 4 0 0 0 0.31686 1 14347 14347 24.991 3.454 1 1315500 42166 15867 26663 26675 48344 48344 -0.0334447278173684 SRERRGAEGCT 11 Unmodified _SRERRGAEGCT_ 0 0 0 MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|4|1|sense MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|4|1|sense MER21B_dup1819|chr11:117020263-117021187:+|3.9322733904063214|0.0260895074240259|7.24|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 611.2913818359375 2 611.291285 1220.56802 0.45989 0.00028113 0.019856 1.2138E-05 0.47975 0.00029327 611.2907231885126 61.426 1.0796 64.685 64.428 65.507 3.2594 190 68 4 0 0 0 0.2728 1 14565 14565 20.415 0 1 1276700 42167 15867 26663 26675 48345 48345 -0.0334447278173684 SREYKQPTLK 10 Unmodified _SREYKQPTLK_ 0 0 0 REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|166|3|sense REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|166|3|sense MSMS UPN48_class_I_Rep_2 6 625.3516235351562 2 625.348594 1248.68264 NaN NaN NaN NaN NaN NaN NaN 65.431 1 68.91 68.41 69.41 3.4792 0 0 0 0.53105 1 14873 14873 2.9952 0.49676 1 + 42168 30428 26664 26676 48346 48346 0.06824159971847621 SRFDVFNFVP 10 Unmodified _SRFDVFNFVP_ 0 0 0 REV__L1MEc_dup7479|chr6:143977852-143979212:-|3.120691495304296|0.1357659367066395|4.52|151.0|58|1|anti-sense REV__L1MEc_dup7479|chr6:143977852-143979212:-|3.120691495304296|0.1357659367066395|4.52|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_2 6 614.3106079101562 2 614.31148 1226.60841 NaN NaN NaN NaN NaN NaN NaN 49.232 1 52.95 52.45 53.45 3.7175 0 0 0 0.53105 1 9925 9925 8.1555 1.4324 1 + 42169 28477 26665 26677 48347 48347 0.0041681688030621444 SRFFLLLY 8 Unmodified _SRFFLLLY_ 0 0 0 MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|30|3|sense MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|30|3|sense MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|30|3|sense MSMS UPN47_class_I_Rep_1 2 529.8062133789062 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 24.343 1 28.073 27.573 28.573 3.7298 0 0 0 0.40738 1 3164 3164 0.79363 0 1 42170 16375 26666 26678 48348 48348 0.06955825207978705 SRFFLLLY 8 Unmodified _SRFFLLLY_ 0 0 0 MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|30|3|sense MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|30|3|sense MLT1E3-int_dup37|chr6:147249281-147250332:+|1.8152526970923728|0.0664806377623577|4.77|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 529.8055419921875 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 28.142 1 31.773 31.273 32.273 3.6311 0 0 0 0.40738 1 3834 3834 0.79363 0 1 42171 16375 26666 26678 48349 48349 0.06955825207978705 SRFKRKIW 8 Unmodified _SRFKRKIW_ 0 0 0 ENSG00000172965.17,MIR4435-2HG,chr2,-,I6.1,111477482,111479906|25|8.11|1|intron ENSG00000172965.17,MIR4435-2HG,chr2,-,I6.1,111477482,111479906|25|8.11|1|intron ENSG00000172965.17,MIR4435-2HG,chr2,-,I6.1,111477482,111479906|25|8.11|1|intron MSMS UPN48_class_I_Rep_3 7 560.8411865234375 2 560.840542 1119.66653 NaN NaN NaN NaN NaN NaN NaN 117.27 1 120.88 120.38 121.38 3.6124 0 0 0 0.40746 1 27903 27903 0.69038 0 1 42172 4602 26667 26679 48350 48350 0.11148543316267023 SRFLGSPAR 9 Unmodified _SRFLGSPAR_ 0 0 0 REV__L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|31|2|sense REV__L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|31|2|sense MSMS UPN47_class_I_Rep_1 2 495.7768249511719 2 495.777608 989.540663 NaN NaN NaN NaN NaN NaN NaN 20.171 1 23.783 23.283 24.283 3.6118 0 0 0 0.3967 1 1976 1976 1.4819 0 1 + 42173 25021 26668 26680 48351 48351 0.04547411740179541 SRFQHAYIY 9 Unmodified _SRFQHAYIY_ 0 0 0 REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|105|2|anti-sense REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|105|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 593.1578369140625 2 592.795998 1183.57744 0.40744 0.00024153 -0.2829 -0.0001677 0.12454 7.3829E-05 592.7957778822284 46.607 0.52609 50.127 50.004 50.53 3.5192 49 34 2 0 0 0 0.12422 1 9090 9090 2.3027 0 1 120560 + 42174 28767 26669 26681 48352 48352 -0.007003364339198015 SRFQHAYIY 9 Unmodified _SRFQHAYIY_ 0 0 0 REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|105|2|anti-sense REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|105|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 592.795998 1183.57744 0.39252 0.00023268 0.37201 0.00022052 0.76453 0.00045321 592.7960244530794 46.178 0.60749 49.936 49.746 50.353 3.7579 -0.12429 -0.00010001 NaN 2.3027 44 38 2 NaN NaN NaN NaN 0 NaN NaN 0 83851 + 42175 28767 26669 26681 -0.007003364339198015 SRFQHAYIY 9 Unmodified _SRFQHAYIY_ 0 0 0 REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|105|2|anti-sense REV__L1MEg_dup6100|chr6:147374619-147376535:+|1.1222128133406146|0.0678570259895415|4.05|151.0|105|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 592.795998 1183.57744 0.4397 0.00026066 1.448 0.00085837 1.8877 0.001119 593.2986542596238 46.481 0.47557 50.117 49.835 50.311 3.6363 0.057577 0.0011757 NaN 2.3027 44 28 2 NaN NaN NaN NaN 0 NaN NaN 0 77311 + 42176 28767 26669 26681 -0.007003364339198015 SRFRQLSLI 9 Unmodified _SRFRQLSLI_ 0 0 0 REV__L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|41|3|sense REV__L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|41|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3172607421875 2 560.33529 1118.65603 0.43702 0.00024488 -0.19608 -0.00010987 0.24094 0.00013501 560.3352161873804 41.04 0.53256 44.791 44.477 45.009 3.7508 67 52 2 0 0 0 0.24936 1 7460 7460 17.113 4.8722 1 134280 + 42177 28598 26670 26682 48353 48353 0.1014451587120675 SRFSINLFI 9 Unmodified _SRFSINLFI_ 0 0 0 REV__L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|139|3|anti-sense REV__L1MB3_dup12346|chr13:26317215-26319185:+|1.0470211447767872|0.012843254655753|6.35|151.0|139|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.8103637695312 2 548.811116 1095.60768 0.51923 0.00028496 -0.33994 -0.00018656 0.17929 9.8395E-05 548.8107933962871 65.152 0.72235 68.631 68.3 69.023 3.4792 88 53 2 0 0 0 0.23293 1 14816 14816 18.146 1.0335 1 243080 + 42178 25811 26671 26683 48354 48354 0.06370022231271832 SRGHKLTV 8 Unmodified _SRGHKLTV_ 0 0 0 ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP ENSG00000124688|ENST00000372171|MAD2L1BP ENSG00000124688|ENST00000372171|MAD2L1BP MULTI-MSMS UPN47_class_I_Rep_2 3 449.7679748535156 2 449.266876 896.519199 -0.097955 -4.4008E-05 -0.25412 -0.00011417 -0.35207 -0.00015817 449.26667088482594 81.464 0.58034 84.848 84.503 85.083 3.3839 134 66 3 0 0 0 0.82752 1 20235 20235 2.3027 0 1 186320 42179 2481 26672 26684 48355 48355 0.06680026711455866 SRGPRCSSSSC 11 Unmodified _SRGPRCSSSSC_ 0 0 0 ENST00000585553.5_1_17:43213984-43221005:+|nuORF;nc|ENSG00000181513|Q8NC06-3|ACBD4 ENST00000585553.5_1_17:43213984-43221005:+|nuORF ENST00000585553.5_1_17:43213984-43221005:+|nuORF MSMS UPN48_class_I_Rep_1 5 563.7399291992188 2 563.740039 1125.46553 NaN NaN NaN NaN NaN NaN NaN 29.002 1 32.552 32.052 33.052 3.5499 0 0 0 0.38417 1 3967 3967 2.4985 0.43874 1 42180 7579 26673 26685 48356 48356 -0.09218881844844873 SRGRKRLA 8 Unmodified _SRGRKRLA_ 0 0 0 LTR3B__dup230|chr19:3175888-3176369:-|1.6158744648039611|0.0956003281323483|4.08|151.0|21|1|anti-sense LTR3B__dup230|chr19:3175888-3176369:-|1.6158744648039611|0.0956003281323483|4.08|151.0|21|1|anti-sense LTR3B__dup230|chr19:3175888-3176369:-|1.6158744648039611|0.0956003281323483|4.08|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_2 3 472.28802490234375 2 472.299042 942.583531 NaN NaN NaN NaN NaN NaN NaN 87.802 1 91.249 90.749 91.749 3.4471 0 0 0 0.40738 1 21827 21827 0.79363 0 1 42181 15633 26674 26686 48357 48357 0.109942265882637 SRGRLPPP 8 Unmodified _SRGRLPPP_ 0 0 0 REV__ENST00000576250.5_1_16:3109019-3109328:-|nuORF REV__ENST00000576250.5_1_16:3109019-3109328:-|nuORF MSMS UPN46_class_I_Rep_3 1 440.2622985839844 2 440.261594 878.508634 NaN NaN NaN NaN NaN NaN NaN 84.766 1 84.766 84.266 85.266 0 0 0 0 0.40738 1 20186 20186 0.79363 0 1 + 42182 23108 26675 26687 48358 48358 0.06452044057027706 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 435.2511901855469 2 435.251226 868.487899 0.11014 4.7938E-05 -0.32721 -0.00014242 -0.21707 -9.4482E-05 435.25098113718747 73.499 0.57475 73.499 73.097 73.672 0 119 60 3 0 0 0 0.82752 1 16966 16966 2.3027 0 1 261130 42183 32890 26676 26688 48359 48359 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.25079345703125 2 435.251226 868.487899 0.010806 4.7035E-06 -0.51076 -0.00022231 -0.49996 -0.00021761 435.25089279725137 71.439 1.1492 74.814 74.672 75.821 3.3751 114 88 2 0 0 0 0.82752 1 17503 17503 0.69038 0 1 215990 42184 32890 26676 26688 48360 48360 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 435.25091552734375 2 435.251226 868.487899 -0.39606 -0.00017239 -0.24544 -0.00010683 -0.6415 -0.00027922 435.25099104155055 70.691 1.8543 73.974 72.963 74.817 3.2828 275 170 2 0 0 0 0.82752 1 17148 17148 0.69038 0 1 254760 42185 32890 26676 26688 48361 48361 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 435.2510986328125 2 435.251226 868.487899 -0.37921 -0.00016505 -0.00061246 -2.6657E-07 -0.37982 -0.00016532 435.251093456439 72.363 0.45454 75.66 75.509 75.964 3.2971 56 39 2 0 0 0 0.82752 1 17741 17741 2.3027 0 1 277930 42186 32890 26676 26688 48362 48362 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 435.2508544921875 2 435.251226 868.487899 -0.39816 -0.0001733 -0.014521 -6.3203E-06 -0.41268 -0.00017962 435.25112339657005 71.827 0.72754 75.046 74.775 75.502 3.2188 97 60 2 0 0 0 0.82752 1 17673 17673 2.3027 0 1 139050 42187 32890 26676 26688 48363 48363 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 435.251226 868.487899 0.1178 5.1273E-05 -0.85647 -0.00037278 -0.73867 -0.00032151 435.2506938321854 75.895 0.11095 75.895 75.854 75.965 0 0.13837 -0.00037142 NaN 2.3027 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 50782 42188 32890 26676 26688 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 435.251226 868.487899 0.016455 7.1621E-06 -0.82065 -0.00035719 -0.8042 -0.00035003 435.2508058855478 72.591 0.30759 75.971 75.837 76.145 3.3799 0.21423 -0.00034024 NaN 2.3027 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 40695 42189 32890 26676 26688 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 435.251226 868.487899 -0.37921 -0.00016505 -0.00061246 -2.6657E-07 -0.37982 -0.00016532 435.251093456439 72.363 0.45454 75.66 75.509 75.964 3.2971 -0.097088 0.00037361 NaN 2.3027 56 39 2 NaN NaN NaN NaN 0 NaN NaN 0 277930 42190 32890 26676 26688 0.048394536773685104 SRGRPLPS 8 Unmodified _SRGRPLPS_ 0 0 0 THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense THE1B-int_dup1063|chr4:42056616-42057821:-|1.9973289581414035|0.4548804605906994|2.13|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 435.251226 868.487899 0.094806 4.1264E-05 -0.47383 -0.00020624 -0.37903 -0.00016497 435.2510087332782 71.951 0.21765 75.502 75.45 75.667 3.5505 -0.25551 -3.8331E-05 NaN 2.3027 38 25 2 NaN NaN NaN NaN 0 NaN NaN 0 64219 42191 32890 26676 26688 0.048394536773685104 SRGVKRDL 8 Unmodified _SRGVKRDL_ 0 0 0 REV__ENST00000463847.1_1_6:38110907-38120162:+|nuORF REV__ENST00000463847.1_1_6:38110907-38120162:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 465.7775573730469 2 465.777608 929.540663 0.19847 9.2441E-05 -0.29904 -0.00013928 -0.10057 -4.6843E-05 465.77743684841306 76.023 0.63739 76.023 75.588 76.226 0 91 65 2 0 0 0 0.82752 1 17684 17684 0.6015 0 1 134420 + 42192 19800 26677 26689 48364 48364 0.07307411740168845 SRHGWGGLWKL 11 Unmodified _SRHGWGGLWKL_ 0 0 0 MSTA_dup7917|chr6:157113342-157113732:-|1.2048822319828612|0.0163566949211357|6.2|151.0|20|2|anti-sense MSTA_dup7917|chr6:157113342-157113732:-|1.2048822319828612|0.0163566949211357|6.2|151.0|20|2|anti-sense MSTA_dup7917|chr6:157113342-157113732:-|1.2048822319828612|0.0163566949211357|6.2|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_1 5 648.8491821289062 2 648.851638 1295.68872 NaN NaN NaN NaN NaN NaN NaN 104.58 1 108.2 107.7 108.7 3.6247 0 0 0 0.38417 1 25196 25196 4.897 1.3005 1 42193 16535 26678 26690 48365 48365 0.052707229940324396 SRHHHAKK 8 Unmodified _SRHHHAKK_ 0 0 0 REV__L1PA7_dup9458|chr10:96573706-96575082:+|2.7698507962340937|0.068215453401184|5.34|151.0|21|2|sense REV__L1PA7_dup9458|chr10:96573706-96575082:+|2.7698507962340937|0.068215453401184|5.34|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 500.7659912109375 2 500.781016 999.54748 NaN NaN NaN NaN NaN NaN NaN 113.94 1 117.51 117.01 118.01 3.572 0 0 0 0.40746 1 28139 28139 0.69038 0 1 + 42194 30186 26679 26691 48366 48366 0.04768769411418816 SRHKGYIVH 9 Unmodified _SRHKGYIVH_ 0 0 0 REV__LTR78_dup2721|chr8:129925562-129925855:-|1.1294735907614482|0.0117701058688731|6.58|151.0|14|1|anti-sense REV__LTR78_dup2721|chr8:129925562-129925855:-|1.1294735907614482|0.0117701058688731|6.58|151.0|14|1|anti-sense MSMS UPN46_class_I_Rep_3 1 548.83544921875 2 548.804157 1095.59376 NaN NaN NaN NaN NaN NaN NaN 55.732 1 55.732 55.232 56.232 0 0 0 0 0.39326 1 12123 12123 2.3027 0 1 + 42195 31007 26680 26692 48367 48367 0.049787895228291745 SRHKITLQ 8 Unmodified _SRHKITLQ_ 0 0 0 REV__L1M3a_dup105|chr4:358872-359530:-|1.110408205091761|0.3841679429158254|1.53|151.0|9|1|sense REV__L1M3a_dup105|chr4:358872-359530:-|1.110408205091761|0.3841679429158254|1.53|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 491.7914733886719 2 491.793258 981.571963 NaN NaN NaN NaN NaN NaN NaN 89.848 1 89.848 89.348 90.348 0 0 0 0 0.40625 1 21637 21637 2.3027 0 1 + 42196 24311 26681 26693 48368 48368 0.08043984774269575 SRHPSITI 8 Unmodified _SRHPSITI_ 0 0 0 L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|120|3|sense L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|120|3|sense L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|120|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 455.7589416503906 2 455.758884 909.503215 -0.38455 -0.00017526 0.0056695 2.5839E-06 -0.37888 -0.00017268 455.75869555304683 27.01 0.79316 30.776 30.406 31.199 3.7662 78 61 2 0 0 0 0.82752 1 3859 3859 2.0598 0 1 106910 42197 14840 26682 26694 48369 48369 0.044843204745689036 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.19830322265625 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 37.919 1 41.584 41.084 42.084 3.6652 0 0 0 0.40738 1 7251 7251 0.79363 0.10326 1 42198 8637 26683 26695 48370 48370 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.19781494140625 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 78.232 1 81.661 81.161 82.161 3.4289 0 0 0 0.40738 1 19443 19443 0.79363 0.10326 1 42199 8637 26683 26695 48371 48371 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.1978759765625 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 87.77 1 91.407 90.907 91.907 3.6372 0 0 0 0.40738 1 21937 21937 0.79363 0.10326 1 42200 8637 26683 26695 48372 48372 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 476.26983642578125 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 111.93 1 115.51 115.01 116.01 3.572 0 0 0 0.40738 1 27615 27615 0.79363 0.10326 1 42201 8637 26683 26695 48373 48373 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 476.19744873046875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 12.655 1 16.044 15.544 16.544 3.3885 0 0 0 0.40738 1 120 120 0.79363 0.10326 1 42202 8637 26683 26695 48374 48374 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 476.19873046875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 42.97 1 46.332 45.832 46.832 3.3611 0 0 0 0.40738 1 8817 8817 0.79363 0 1 42203 8637 26683 26695 48375 48375 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 476.3265686035156 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 115.91 1 119.41 118.91 119.91 3.4965 0 0 0 0.40738 1 28281 28281 0.79363 0.10326 1 42204 8637 26683 26695 48376 48376 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 476.3263244628906 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 117.65 1 121.14 120.64 121.64 3.4891 0 0 0 0.40738 1 28765 28765 0.79363 0.10326 1 42205 8637 26683 26695 48377 48377 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_3 4 476.1979675292969 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 14.128 1 17.498 16.998 17.998 3.3697 0 0 0 0.40738 1 477 477 0.79363 0.10326 1 42206 8637 26683 26695 48378 48378 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_3 4 476.1986999511719 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 44.144 1 47.388 46.888 47.888 3.2441 0 0 0 0.40738 1 9229 9229 0.79363 0.10326 1 42207 8637 26683 26695 48379 48379 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.1982116699219 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 12.923 1 16.436 15.936 16.936 3.5133 0 0 0 0.40738 1 155 155 0.79363 0.10326 1 42208 8637 26683 26695 48380 48380 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.273681640625 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 26.355 1 29.921 29.421 30.421 3.5667 0 0 0 0.40738 1 3221 3221 0.79363 0 1 42209 8637 26683 26695 48381 48381 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.1984558105469 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 39.194 1 42.699 42.199 43.199 3.5048 0 0 0 0.40738 1 6890 6890 0.79363 0.10326 1 42210 8637 26683 26695 48382 48382 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.1983337402344 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 79.298 1 82.833 82.333 83.333 3.5352 0 0 0 0.40738 1 18926 18926 0.79363 0.10326 1 42211 8637 26683 26695 48383 48383 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_1 5 476.1982421875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 83.638 1 87.225 86.725 87.725 3.5871 0 0 0 0.40738 1 20006 20006 0.79363 0 1 42212 8637 26683 26695 48384 48384 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.1981201171875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 12.356 1 16.011 15.511 16.511 3.6552 0 0 0 0.40738 1 62 62 0.79363 0.10326 1 42213 8637 26683 26695 48385 48385 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.1982116699219 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 12.606 1 16.262 15.762 16.762 3.6552 0 0 0 0.40738 1 106 106 0.79363 0.10326 1 42214 8637 26683 26695 48386 48386 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.1984558105469 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 21.188 1 24.836 24.336 25.336 3.648 0 0 0 0.40738 1 1958 1958 0.79363 0.10326 1 42215 8637 26683 26695 48387 48387 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.19873046875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 29.5 1 33.131 32.631 33.631 3.6316 0 0 0 0.40738 1 4200 4200 0.79363 0.10326 1 42216 8637 26683 26695 48388 48388 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.1981201171875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 33.983 1 37.644 37.144 38.144 3.6607 0 0 0 0.40738 1 5426 5426 0.79363 0.10326 1 42217 8637 26683 26695 48389 48389 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.19818115234375 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 37.232 1 40.934 40.434 41.434 3.7021 0 0 0 0.40738 1 6349 6349 0.79363 0.10326 1 42218 8637 26683 26695 48390 48390 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.19866943359375 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 43.785 1 47.547 47.047 48.047 3.7617 0 0 0 0.40738 1 8270 8270 0.79363 0.10326 1 42219 8637 26683 26695 48391 48391 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.19757080078125 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 64.654 1 68.133 67.633 68.633 3.4792 0 0 0 0.40738 1 14634 14634 0.79363 0 1 42220 8637 26683 26695 48392 48392 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_2 6 476.1985778808594 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 75.018 1 78.608 78.108 79.108 3.59 0 0 0 0.40738 1 17677 17677 0.79363 0.10326 1 42221 8637 26683 26695 48393 48393 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_3 7 476.19842529296875 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 25.728 1 29.497 28.997 29.997 3.769 0 0 0 0.40738 1 3171 3171 0.79363 0.10326 1 42222 8637 26683 26695 48394 48394 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_3 7 476.1985168457031 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 42.952 1 46.594 46.094 47.094 3.6415 0 0 0 0.40738 1 7934 7934 0.79363 0 1 42223 8637 26683 26695 48395 48395 -0.09208698377256042 SRHQAFCC 8 Unmodified _SRHQAFCC_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|78|1|anti-sense MSMS UPN48_class_I_Rep_3 7 476.1986999511719 2 476.199822 950.38509 NaN NaN NaN NaN NaN NaN NaN 60.701 1 64.213 63.713 64.713 3.5128 0 0 0 0.40738 1 13358 13358 0.79363 0.10326 1 42224 8637 26683 26695 48396 48396 -0.09208698377256042 SRIPGSHGKF 10 Unmodified _SRIPGSHGKF_ 0 0 0 L1MB8_dup13572|chr16:17432104-17432697:+|1.1423034411815012|0.0279161679282472|5.35|151.0|32|2|anti-sense L1MB8_dup13572|chr16:17432104-17432697:+|1.1423034411815012|0.0279161679282472|5.35|151.0|32|2|anti-sense L1MB8_dup13572|chr16:17432104-17432697:+|1.1423034411815012|0.0279161679282472|5.35|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.2965698242188 2 543.296165 1084.57778 NaN NaN NaN NaN NaN NaN NaN 33.893 1 37.413 36.913 37.913 3.5201 0 0 0 0.53105 1 5350 5350 1.3295 0 1 42225 10942 26684 26696 48397 48397 0.03887083285940207 SRISRKYA 8 Unmodified _SRISRKYA_ 0 0 0 REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|48|2|sense REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 490.7852478027344 2 490.785433 979.556313 NaN NaN NaN NaN NaN NaN NaN 88.839 1 92.669 92.169 93.169 3.8293 0 0 0 0.40746 1 21080 21080 0.69038 0 1 + 42226 29264 26685 26697 48398 48398 0.06571698257221215 SRIVKISLI 9 Unmodified _SRIVKISLI_ 0 0 0 L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|239|2|anti-sense L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|239|2|anti-sense L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|239|2|anti-sense MSMS UPN48_class_I_Rep_1 5 514.8450927734375 2 514.844959 1027.67537 NaN NaN NaN NaN NaN NaN NaN 52.318 1 55.841 55.341 56.341 3.5227 0 0 0 0.39036 1 10869 10869 2.9952 0 1 42227 9800 26686 26698 48399 48399 0.16263472162086146 SRKAILTPI 9 Unmodified _SRKAILTPI_ 0 0 0 ENST00000605337.5_2_1:54675795-54678281:+|nuORF ENST00000605337.5_2_1:54675795-54678281:+|nuORF ENST00000605337.5_2_1:54675795-54678281:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 499.8210144042969 2 499.821484 997.628415 -0.23257 -0.00011624 0.23876 0.00011934 0.006189 3.0934E-06 499.82155432653764 39.573 0.54577 43.239 42.885 43.431 3.6668 53 40 2 0 0 0 0.48846 1 7741 7741 1.8442 0 1 68810 42228 7674 26687 26699 48400 48400 0.1295061261095043 SRKAQVTDAAG 11 Unmodified _SRKAQVTDAAG_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 MSMS UPN47_class_I_Rep_1 2 552.2933349609375 2 552.293819 1102.57309 NaN NaN NaN NaN NaN NaN NaN 96.186 1 99.951 99.451 100.45 3.7648 0 0 0 0.38417 1 23855 23855 2.7352 0.15772 1 + 42229 20708 26688 26700 48401 48401 0.025901543525151283 SRKEMPPL 8 Unmodified _SRKEMPPL_ 0 0 0 REV__L1ME3_dup3598|chr6:156120756-156121332:+|1.44994600422094|0.0102651639373029|7.14|146.0|31|1|anti-sense REV__L1ME3_dup3598|chr6:156120756-156121332:+|1.44994600422094|0.0102651639373029|7.14|146.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.2623291015625 2 479.262945 956.511337 -0.81016 -0.00038828 -0.64453 -0.0003089 -1.4547 -0.00069718 479.26226927598964 12.869 0.15126 16.243 16.184 16.335 3.3734 19 15 2 0 0 0 0.82752 1 170 170 0.79363 0 1 13258 + 42230 27951 26689 26701 48402 48402 0.03134131399679063 SRKIHGLS 8 Unmodified _SRKIHGLS_ 0 0 0 ENST00000528706.5_1_11:117279912-117282881:+|nuORF;ENST00000533675.5_1_11:117265793-117282881:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164;ENST00000533223.1_1_11:117257895-117280842:+|nuORF ENST00000528706.5_1_11:117279912-117282881:+|nuORF ENST00000528706.5_1_11:117279912-117282881:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 449.26629638671875 2 449.266876 896.519199 -0.21915 -9.8457E-05 -0.0599 -2.6911E-05 -0.27905 -0.00012537 449.26677903874884 81.517 0.81082 84.841 84.498 85.308 3.3231 171 88 3 0 0 0 0.82752 1 20336 20336 2.0598 0 1 142880 42231 1933 26690 26702 48403 48403 0.06680026711467235 SRKKFTRVVH 10 Unmodified _SRKKFTRVVH_ 0 0 0 REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 629.7125244140625 2 629.380563 1256.74657 NaN NaN NaN NaN NaN NaN NaN 14.658 1 14.658 14.158 15.158 0 0 0 0 0.53105 1 687 687 1.4819 0 1 + 42232 31711 26691 26703 48404 48404 0.1284698491947438 SRKKFTRVVH 10 Unmodified _SRKKFTRVVH_ 0 0 0 REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 629.3818969726562 2 629.380563 1256.74657 NaN NaN NaN NaN NaN NaN NaN 16.145 1 16.145 15.645 16.645 0 0 0 0 0.53105 1 1053 1053 1.4819 0 1 + 42233 31711 26691 26703 48405 48405 0.1284698491947438 SRKKFTRVVH 10 Unmodified _SRKKFTRVVH_ 0 0 0 REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 629.3832397460938 2 629.380563 1256.74657 NaN NaN NaN NaN NaN NaN NaN 17.724 1 17.724 17.224 18.224 0 0 0 0 0.53105 1 1437 1437 1.4819 0 1 + 42234 31711 26691 26703 48406 48406 0.1284698491947438 SRKKFTRVVH 10 Unmodified _SRKKFTRVVH_ 0 0 0 REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 629.3826904296875 2 629.380563 1256.74657 NaN NaN NaN NaN NaN NaN NaN 19.103 1 19.103 18.603 19.603 0 0 0 0 0.53105 1 1771 1771 1.4819 0 1 + 42235 31711 26691 26703 48407 48407 0.1284698491947438 SRKKFTRVVH 10 Unmodified _SRKKFTRVVH_ 0 0 0 REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 629.3833618164062 2 629.380563 1256.74657 NaN NaN NaN NaN NaN NaN NaN 20.506 1 20.506 20.006 21.006 0 0 0 0 0.53105 1 2145 2145 1.4819 0 1 + 42236 31711 26691 26703 48408 48408 0.1284698491947438 SRKKFTRVVH 10 Unmodified _SRKKFTRVVH_ 0 0 0 REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense REV__MLT1F1_dup1436|chr7:105352166-105352611:+|1.1566773206117766|0.0065797233920414|7.46|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 629.38232421875 2 629.380563 1256.74657 NaN NaN NaN NaN NaN NaN NaN 20.789 1 20.789 20.289 21.289 0 0 0 0 0.53105 1 2220 2220 1.4819 0 1 + 42237 31711 26691 26703 48409 48409 0.1284698491947438 SRKKKGCR 8 Unmodified _SRKKKGCR_ 0 0 0 L1MB3_dup17248|chr22:45826083-45827129:+|3.183440457473949|0.0236688777870952|7.07|151.0|3|1|sense L1MB3_dup17248|chr22:45826083-45827129:+|3.183440457473949|0.0236688777870952|7.07|151.0|3|1|sense L1MB3_dup17248|chr22:45826083-45827129:+|3.183440457473949|0.0236688777870952|7.07|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 481.33740234375 2 481.787453 961.560352 NaN NaN NaN NaN NaN NaN NaN 115.26 1 118.74 118.24 119.24 3.4802 0 0 0 0.40798 1 28333 28333 0 0 1 42238 10383 26692 26704 48410 48410 0.07803464479297872 SRKKKKKKK 9 Unmodified _SRKKKKKKK_ 0 0 0 AluSx3_dup16584|chrX:1361471-1361777:+|1.055293651604552|0.3522637998199448|1.58|151.0|7|2|sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|5|1|sense;AluJr_dup58976|chr13:28188376-28188619:+|1.6618824381525892|0.0225279813943205|6.2|151.0|2|1|sense;L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|6|1|sense REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron;L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|6|1|sense REV__ENSG00000176225.15,RTTN,chr18,-,I56.1,70017675,70019289|36|4.23|1|intron MSMS UPN46_class_I_Rep_3 1 579.9116821289062 2 579.911499 1157.80845 NaN NaN NaN NaN NaN NaN NaN 82.687 1 82.687 82.187 83.187 0 0 0 0 0.4029 1 19601 19601 0 0 1 42239 20582;9721 26693 26705 48411 48411 0.23585336338601337 SRKKRKRW 8 Unmodified _SRKKRKRW_ 0 0 0 L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|19|3|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|19|3|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 572.849853515625 2 572.862341 1143.71013 NaN NaN NaN NaN NaN NaN NaN 13.445 1 16.902 16.402 17.402 3.457 0 0 0 0.40746 1 332 332 0.69038 0 1 42240 13438 26694 26706 48412 48412 0.14402152813408975 SRKKRKRW 8 Unmodified _SRKKRKRW_ 0 0 0 L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|19|3|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|19|3|sense L1MEg2_dup704|chr22:25645939-25646399:+|1.0715546582361914|0.0446252857428058|4.59|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 572.8499145507812 2 572.862341 1143.71013 NaN NaN NaN NaN NaN NaN NaN 13.386 1 16.774 16.274 17.274 3.388 0 0 0 0.40746 1 314 314 0.69038 0 1 42241 13438 26694 26706 48413 48413 0.14402152813408975 SRKLCIHL 8 Unmodified _SRKLCIHL_ 0 0 0 REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.2883605957031 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 48.707 1 52.054 51.554 52.554 3.3465 0 0 0 0.40753 1 10553 10553 0.6015 0 1 + 42242 21141 26695 26707 48414 48414 0.07341830390544146 SRKLNPKK 8 Unmodified _SRKLNPKK_ 0 0 0 MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 485.81158447265625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 79.531 1 82.996 82.496 83.496 3.465 0 0 0 0.40746 1 19821 19821 0.69038 0 1 42243 15866 26696 26708 48415 48415 0.12232861670997863 SRKLNPKK 8 Unmodified _SRKLNPKK_ 0 0 0 MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 63.972 1 67.228 66.728 67.728 3.2556 0 0 0 0.40746 1 15208 15208 0.69038 0 1 42244 15866 26696 26708 48416 48416 0.12232861670997863 SRKLNPKK 8 Unmodified _SRKLNPKK_ 0 0 0 MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 87.711 1 91.158 90.658 91.658 3.4471 0 0 0 0.40746 1 21805 21805 0.69038 0 1 42245 15866 26696 26708 48417 48417 0.12232861670997863 SRKLNPKK 8 Unmodified _SRKLNPKK_ 0 0 0 MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 113.72 1 117.22 116.72 117.72 3.4963 0 0 0 0.40746 1 27903 27903 0.69038 0 1 42246 15866 26696 26708 48418 48418 0.12232861670997863 SRKLNPKK 8 Unmodified _SRKLNPKK_ 0 0 0 MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MER21B_dup149|chr1:175936135-175936801:+|1.6966708980983147|0.0175806106853995|6.59|151.0|19|3|sense MSMS UPN48_class_I_Rep_1 5 485.7474060058594 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 114.71 1 118.34 117.84 118.84 3.6301 0 0 0 0.40746 1 27888 27888 0.69038 0 1 42247 15866 26696 26708 48419 48419 0.12232861670997863 SRKLRPTL 8 Unmodified _SRKLRPTL_ 0 0 0 REV__AluJr_dup64640|chr15:68118355-68118640:-|1.013658892309962|0.0389434128110134|4.7|151.0|22|3|anti-sense REV__AluJr_dup64640|chr15:68118355-68118640:-|1.013658892309962|0.0389434128110134|4.7|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81146240234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 29.405 1 32.897 32.397 33.397 3.4923 0 0 0 0.40625 1 4704 4704 2.3027 0 1 + 42248 17049 26697 26709 48420 48420 0.12232861670997863 SRKPPLPYH 9 Unmodified _SRKPPLPYH_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MSMS UPN47_class_I_Rep_2 3 547.8123168945312 2 547.808908 1093.60326 NaN NaN NaN NaN NaN NaN NaN 17.293 1 20.68 20.18 21.18 3.387 0 0 0 0.40038 1 1265 1265 0.6015 0 1 42249 4739 26698 26710 48421 48421 0.06020557808369631 SRKRKRGVF 9 Unmodified _SRKRKRGVF_ 0 0 0 chr1:197143810-197143957|148|18.41|0.61|4.91|-|1|ASPM,ASPM|2 chr1:197143810-197143957|148|18.41|0.61|4.91|-|1|ASPM,ASPM|2 chr1:197143810-197143957|148|18.41|0.61|4.91|-|1|ASPM,ASPM|2 MSMS UPN48_class_I_Rep_1 5 567.35498046875 2 567.354348 1132.69414 NaN NaN NaN NaN NaN NaN NaN 85.826 1 89.432 88.932 89.932 3.6059 0 0 0 0.40038 1 20542 20542 0.6015 0 1 42250 567 26699 26711 48422 48422 0.13310446576520008 SRKRRGHL 8 Unmodified _SRKRRGHL_ 0 0 0 ENST00000517309.5_1_8:97345834-97345930:+|nuORF ENST00000517309.5_1_8:97345834-97345930:+|nuORF ENST00000517309.5_1_8:97345834-97345930:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 504.8086242675781 2 505.309941 1008.60533 -0.031956 -1.6148E-05 0.82535 0.00041706 0.7934 0.00040091 505.3104039172438 26.132 0.097965 26.132 26.114 26.212 0 5 4 2 0 0 0 0.72333 1 3696 3696 0.69038 0 1 229920 42251 7208 26700 26712 48423 48423 0.10137031336853397 SRKSQQNCEK 10 Unmodified _SRKSQQNCEK_ 0 0 0 REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|21|2|sense REV__L1MA4_dup3642|chr6:17680244-17681273:+|1.0161919426379973|0.0250544723173605|5.34|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 604.2943115234375 2 604.296036 1206.57752 NaN NaN NaN NaN NaN NaN NaN 67.182 1 70.543 70.043 71.043 3.3611 0 0 0 0.53105 1 16139 16139 1.1933 0.12188 1 + 42252 25159 26701 26713 48424 48424 -0.017507044962258078 SRKTKGAR 8 Unmodified _SRKTKGAR_ 0 0 0 REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 452.2774963378906 2 452.277775 902.540997 0.032208 1.4567E-05 -0.28229 -0.00012767 -0.25008 -0.0001131 452.2775445558192 83.197 0.32429 86.784 86.746 87.07 3.5871 50 36 2 0 0 0 0.82752 1 19891 19891 0.69038 0 1 126670 + 42253 22629 26702 26714 48425 48425 0.08582831460034868 SRKTKGAR 8 Unmodified _SRKTKGAR_ 0 0 0 REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 452.277775 902.540997 0.19106 8.6413E-05 -0.28856 -0.00013051 -0.097495 -4.4095E-05 452.2775670898717 86.779 0.076279 86.779 86.754 86.831 0 -0.063408 -0.00010597 NaN 0.69038 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 333670 + 42254 22629 26702 26714 0.08582831460034868 SRKTKGAR 8 Unmodified _SRKTKGAR_ 0 0 0 REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 452.277775 902.540997 0.11971 5.4144E-05 -0.020035 -9.0614E-06 0.09968 4.5083E-05 452.27770739984555 83.307 0.085991 86.845 86.796 86.882 3.5386 0.0024374 0.00013692 NaN 0.69038 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 28616 + 42255 22629 26702 26714 0.08582831460034868 SRKTKGAR 8 Unmodified _SRKTKGAR_ 0 0 0 REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 452.277775 902.540997 -0.18303 -8.2781E-05 0.085183 3.8526E-05 -0.097848 -4.4254E-05 452.27772611661834 83.551 0.41129 86.901 86.7 87.111 3.35 0.058531 0.00023209 NaN 0.69038 61 46 2 NaN NaN NaN NaN 0 NaN NaN 0 86830 + 42256 22629 26702 26714 0.08582831460034868 SRKTKGAR 8 Unmodified _SRKTKGAR_ 0 0 0 REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 452.277775 902.540997 0.032208 1.4567E-05 -0.28229 -0.00012767 -0.25008 -0.0001131 452.2775445558192 83.197 0.32429 86.784 86.746 87.07 3.5871 -0.058228 -0.0001003 NaN 0.69038 50 36 2 NaN NaN NaN NaN 0 NaN NaN 0 126670 + 42257 22629 26702 26714 0.08582831460034868 SRKTKGAR 8 Unmodified _SRKTKGAR_ 0 0 0 REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF REV__ENST00000491134.5_1_1:14075919-14099594:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 452.277775 902.540997 0.15381 6.9566E-05 -0.2516 -0.00011379 -0.097785 -4.4226E-05 452.2775914888161 83.222 0.37923 86.903 86.675 87.054 3.6814 0.060668 -7.2545E-05 NaN 0.69038 66 47 2 NaN NaN NaN NaN 0 NaN NaN 0 121690 + 42258 22629 26702 26714 0.08582831460034868 SRKTNNLI 8 Unmodified _SRKTNNLI_ 0 0 0 L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|74|3|sense L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|74|3|sense L1MA9_dup14611|chr17:16182940-16185386:+|1.9114600535131496|0.0535564508633001|5.16|151.0|74|3|sense MSMS UPN48_class_I_Rep_3 7 473.2786560058594 2 473.277441 944.540328 NaN NaN NaN NaN NaN NaN NaN 46.107 1 49.744 49.244 50.244 3.6369 0 0 0 0.40604 1 8903 8903 2.5775 0 1 42259 10115 26703 26715 48426 48426 0.06583992020341611 SRKVGLHGS 9 Unmodified _SRKVGLHGS_ 0 0 0 L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|102|2|anti-sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|102|2|anti-sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|102|2|anti-sense MSMS UPN47_class_I_Rep_1 2 470.77099609375 2 470.769783 939.525013 NaN NaN NaN NaN NaN NaN NaN 43.676 1 47.371 46.871 47.871 3.6951 0 0 0 0.3967 1 9005 9005 1.4819 0.68827 1 42260 9850 26704 26716 48427 48427 0.05283125223149909 SRKVKKSKQK 10 Unmodified _SRKVKKSKQK_ 0 0 0 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 MSMS UPN47_class_I_Rep_1 2 406.26678466796875 3 406.266456 1215.77754 NaN NaN NaN NaN NaN NaN NaN 34.54 1 38.226 37.726 38.726 3.6859 0 0 0 0.53105 1 6228 6228 0.69767 0 1 42261 1306 26705 26717 48428 48428 0.17828138233676327 SRKVKKSKQK 10 Unmodified _SRKVKKSKQK_ 0 0 0 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 MSMS UPN47_class_I_Rep_2 3 406.26678466796875 3 406.266456 1215.77754 NaN NaN NaN NaN NaN NaN NaN 32.614 1 36.069 35.569 36.569 3.4547 0 0 0 0.53105 1 5673 5673 0.69767 0.42865 1 42262 1306 26705 26717 48429 48429 0.17828138233676327 SRKVKKSKQK 10 Unmodified _SRKVKKSKQK_ 0 0 0 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 MSMS UPN47_class_I_Rep_2 3 406.26708984375 3 406.266456 1215.77754 NaN NaN NaN NaN NaN NaN NaN 33.207 1 36.662 36.162 37.162 3.4547 0 0 0 0.53105 1 5853 5853 0.69767 0 1 42263 1306 26705 26717 48430 48430 0.17828138233676327 SRKVMKLP 8 Unmodified _SRKVMKLP_ 0 0 0 REV__ENST00000489820.5_1_7:149541913-149542129:+|nuORF REV__ENST00000489820.5_1_7:149541913-149542129:+|nuORF MSMS UPN47_class_I_Rep_1 2 479.781494140625 2 479.796955 957.579357 NaN NaN NaN NaN NaN NaN NaN 36.358 1 40.027 39.527 40.527 3.6692 0 0 0 0.40746 1 6777 6777 0.69038 0 1 + 42264 22621 26706 26718 48431 48431 0.09887001050356048 SRLFKKPGK 9 Unmodified _SRLFKKPGK_ 0 0 0 REV__HERVH-int_dup1821|chr4:139158842-139159609:-|10.244383357717975|0.2108370951036177|5.6|151.0|22|1|anti-sense REV__HERVH-int_dup1821|chr4:139158842-139159609:-|10.244383357717975|0.2108370951036177|5.6|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 530.833984375 2 530.834926 1059.6553 NaN NaN NaN NaN NaN NaN NaN 66.415 1 69.922 69.422 70.422 3.5077 0 0 0 0.39518 1 15082 15082 1.8442 0 1 + 42265 23655 26707 26719 48432 48432 0.12785721222144275 SRLKICHL 8 Unmodified _SRLKICHL_ 0 0 0 Tigger1_dup7872|chr10:853705-855833:-|2.747513493487618|0.0579936782078824|5.57|151.0|107|2|anti-sense Tigger1_dup7872|chr10:853705-855833:-|2.747513493487618|0.0579936782078824|5.57|151.0|107|2|anti-sense Tigger1_dup7872|chr10:853705-855833:-|2.747513493487618|0.0579936782078824|5.57|151.0|107|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2855224609375 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 58.694 1 62.181 61.681 62.681 3.487 0 0 0 0.40625 1 12830 12830 2.3027 0 1 42266 33183 26708 26720 48433 48433 0.07341830390521409 SRLKNKAK 8 Unmodified _SRLKNKAK_ 0 0 0 REV__L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|70|3|sense REV__L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|70|3|sense MSMS UPN47_class_I_Rep_2 3 472.8017272949219 2 472.803626 943.592698 NaN NaN NaN NaN NaN NaN NaN 32.989 1 36.444 35.944 36.944 3.4547 0 0 0 0.4044 1 5786 5786 4.756 0 1 + 42267 24484 26709 26721 48434 48434 0.1186457515393613 SRLPARQLIQT 11 Unmodified _SRLPARQLIQT_ 0 0 0 REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 641.8829345703125 2 641.883136 1281.75172 0.44438 0.00028524 -0.90089 -0.00057826 -0.4565 -0.00029302 641.8824512451783 88.612 0.28877 92.235 92.179 92.468 3.6229 67 37 3 0 0 0 0.65821 1 21252 21252 2.4985 0 1 266810 + 42268 20194 26710 26722 48435 48435 0.12211243991418996 SRLPARQLIQT 11 Unmodified _SRLPARQLIQT_ 0 0 0 REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 641.883136 1281.75172 0.75031 0.00048161 -1.3906 -0.00089261 -0.64031 -0.000411 641.8820796660464 92.212 0.07267 92.212 92.167 92.24 0 0.017413 -0.0003609 NaN 2.4985 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1225600 + 42269 20194 26710 26722 0.12211243991418996 SRLPARQLIQT 11 Unmodified _SRLPARQLIQT_ 0 0 0 REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 641.883136 1281.75172 0.58243 0.00037385 -1.1587 -0.00074374 -0.57626 -0.00036989 641.8822919442206 88.71 0.82771 92.163 91.692 92.52 3.4525 -0.032279 -6.3156E-05 NaN 2.4985 138 111 2 NaN NaN NaN NaN 0 NaN NaN 0 158380 + 42270 20194 26710 26722 0.12211243991418996 SRLPARQLIQT 11 Unmodified _SRLPARQLIQT_ 0 0 0 REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 641.883136 1281.75172 0.49931 0.0003205 -1.1108 -0.00071303 -0.61153 -0.00039253 641.8823268027598 88.432 1.814 92.17 91.458 93.272 3.7379 -0.025327 -1.7365E-06 NaN 2.4985 375 221 2 NaN NaN NaN NaN 0 NaN NaN 0 317790 + 42271 20194 26710 26722 0.12211243991418996 SRLPKRVTH 9 Unmodified _SRLPKRVTH_ 0 0 0 REV__ENST00000564068.1_1_15:75628478-75628964:+|nuORF REV__ENST00000564068.1_1_15:75628478-75628964:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.2742309570312 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 73.281 1 76.762 76.262 77.262 3.4812 0 0 0 0.4007 1 17259 17259 0.52476 0 1 + 42272 23044 26711 26723 48436 48436 0.10899051448268438 SRLPLLVAR 9 Unmodified _SRLPLLVAR_ 0 0 0 REV__LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|2|1|sense REV__LTR57_dup221|chr17:45043394-45043788:+|1.134026752891835|0.0820787886704946|3.79|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 512.8352661132812 2 512.834926 1023.6553 0.29908 0.00015338 -0.30917 -0.00015856 -0.010096 -5.1774E-06 512.8347082642277 43.665 0.56189 43.665 43.358 43.92 0 90 54 3 0 0 0 0.23293 1 8707 8707 18.146 0 1 257700 + 42273 30975 26712 26724 48437 48437 0.14441721222124215 SRLQKIRLFT 10 Unmodified _SRLQKIRLFT_ 0 0 0 REV__ENSG00000188064|ENST00000339464|WNT7B REV__ENSG00000188064|ENST00000339464|WNT7B MSMS UPN46_class_I_Rep_3 1 631.3909301757812 2 631.390596 1260.76664 NaN NaN NaN NaN NaN NaN NaN 69.677 1 69.677 69.177 70.177 0 0 0 0 0.53105 1 15979 15979 1.4819 0 1 + 42274 20953 26713 26725 48438 48438 0.14668735859390836 SRLQKIRLFT 10 Unmodified _SRLQKIRLFT_ 0 0 0 REV__ENSG00000188064|ENST00000339464|WNT7B REV__ENSG00000188064|ENST00000339464|WNT7B MSMS UPN48_class_I_Rep_1 5 631.8169555664062 2 631.390596 1260.76664 NaN NaN NaN NaN NaN NaN NaN 71.204 1 74.67 74.17 75.17 3.466 0 0 0 0.53105 1 16631 16631 3.5965 0 1 + 42275 20953 26713 26725 48439 48439 0.14668735859390836 SRLRDVPR 8 Unmodified _SRLRDVPR_ 0 0 0 REV__AluSx_dup70494|chr11:47370123-47370421:+|1.2038867112044556|0.0433543363833157|4.8|151.0|9|3|sense REV__AluSx_dup70494|chr11:47370123-47370421:+|1.2038867112044556|0.0433543363833157|4.8|151.0|9|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 499.7957458496094 2 499.796332 997.578111 -0.0035578 -1.7782E-06 0.10546 5.2709E-05 0.1019 5.0931E-05 499.7961403374363 27.592 0.82537 27.592 27.235 28.06 0 99 64 2 0 0 0 0.82752 1 4229 4229 1.8442 0 1 91897 + 42276 17150 26714 26726 48440 48440 0.07922503005795534 SRLRWHKGLI 10 Unmodified _SRLRWHKGLI_ 0 0 0 REV__nc|ENSG00000127241|P48740|MASP1 REV__nc|ENSG00000127241|P48740|MASP1 MSMS UPN47_class_I_Rep_3 4 422.59246826171875 3 422.591163 1264.75166 NaN NaN NaN NaN NaN NaN NaN 53.247 1 56.441 55.941 56.941 3.1948 0 0 0 0.53105 1 11996 11996 1.3296 0.31607 1 + 42277 31973 26715 26727 48441 48441 0.12987288782096584 SRLWRLVWPL 10 Unmodified _SRLWRLVWPL_ 0 0 0 REV__ENSG00000179598|ENST00000321560|PLD6 REV__ENSG00000179598|ENST00000321560|PLD6 MULTI-MSMS UPN46_class_I_Rep_3 1 442.599853515625 3 442.599547 1324.77681 0.10302 4.5595E-05 0.10596 4.6899E-05 0.20898 9.2494E-05 442.59950394547917 51.815 0.35007 51.815 51.487 51.838 0 46 39 2 0 0 0 0.56296 1 11033 11033 1.7423 1.0446 1 299430 + 42278 20684 26716 26728 48442 48442 0.12741343584639253 SRLWRLVWPL 10 Unmodified _SRLWRLVWPL_ 0 0 0 REV__ENSG00000179598|ENST00000321560|PLD6 REV__ENSG00000179598|ENST00000321560|PLD6 MULTI-MSMS UPN48_class_I_Rep_1 5 442.59967041015625 3 442.599547 1324.77681 -0.027608 -1.2219E-05 0.31977 0.00014153 0.29217 0.00012931 442.5995362295794 47.095 1.7122 50.614 49.754 51.466 3.5192 337 121 4 0 0 0 0.56296 4 9197 9115;9197;9324;9414 1.7423 1.7423 1 522740 + 42279 20684 26716 26728 48443;48444;48445;48446 48444 0.12741343584639253 SRLWRLVWPL 10 Unmodified _SRLWRLVWPL_ 0 0 0 REV__ENSG00000179598|ENST00000321560|PLD6 REV__ENSG00000179598|ENST00000321560|PLD6 MULTI-MSMS UPN48_class_I_Rep_2 6 442.59967041015625 3 442.599547 1324.77681 0.035222 1.5589E-05 0.28889 0.00012786 0.32412 0.00014345 442.59952147492197 46.829 1.5896 50.578 49.724 51.313 3.7494 282 122 4 0 0 0 0.56296 3 9047 9047;9258;9327 1.7423 1.7423 1 546350 + 42280 20684 26716 26728 48447;48448;48449 48447 0.12741343584639253 SRLWRLVWPL 10 Unmodified _SRLWRLVWPL_ 0 0 0 REV__ENSG00000179598|ENST00000321560|PLD6 REV__ENSG00000179598|ENST00000321560|PLD6 MULTI-MSMS UPN48_class_I_Rep_3 7 442.5994873046875 3 442.599547 1324.77681 0.073821 3.2673E-05 0.12873 5.6977E-05 0.20255 8.965E-05 442.5994862427591 46.968 1.5935 50.605 49.737 51.33 3.6363 255 114 3 0 0 0 0.56296 4 9161 8990;9161;9204;9247 1.7423 1.7423 1 495500 + 42281 20684 26716 26728 48450;48451;48452;48453 48451 0.12741343584639253 SRLWRLVWPL 10 Unmodified _SRLWRLVWPL_ 0 0 0 REV__ENSG00000179598|ENST00000321560|PLD6 REV__ENSG00000179598|ENST00000321560|PLD6 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 442.599547 1324.77681 0.10302 4.5595E-05 0.10596 4.6899E-05 0.20898 9.2494E-05 442.59950394547917 51.815 0.35007 51.815 51.487 51.838 0 0 0 NaN 1.7423 46 39 2 NaN NaN NaN NaN 0 NaN NaN 0 299430 + 42282 20684 26716 26728 0.12741343584639253 SRLWRLVWPL 10 Unmodified _SRLWRLVWPL_ 0 0 0 REV__ENSG00000179598|ENST00000321560|PLD6 REV__ENSG00000179598|ENST00000321560|PLD6 MULTI-MATCH UPN47_class_I_Rep_1 2 3 442.599547 1324.77681 -0.18361 -8.1267E-05 0.19831 8.7772E-05 0.014697 6.5047E-06 442.5996177999134 47.031 0.1195 50.726 50.673 50.792 3.6951 0.095386 -6.0328E-05 NaN 1.7423 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 68323 + 42283 20684 26716 26728 0.12741343584639253 SRNLQTVY 8 Unmodified _SRNLQTVY_ 0 0 0 REV__ENSG00000006695|ENST00000261643|COX10 REV__ENSG00000006695|ENST00000261643|COX10 MULTI-MSMS UPN46_class_I_Rep_3 1 490.7610778808594 2 490.761623 979.508694 -0.016856 -8.2721E-06 -0.42195 -0.00020708 -0.4388 -0.00021535 490.76128701204107 27.69 0.28921 27.69 27.483 27.772 0 34 22 2 0 0 0 0.82752 1 4139 4139 7.9102 0 1 49837 + 42284 17541 26717 26729 48454 48454 0.01811999266362818 SRNLQTVY 8 Unmodified _SRNLQTVY_ 0 0 0 REV__ENSG00000006695|ENST00000261643|COX10 REV__ENSG00000006695|ENST00000261643|COX10 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 490.761623 979.508694 -0.016856 -8.2721E-06 -0.42195 -0.00020708 -0.4388 -0.00021535 490.76128701204107 27.69 0.28921 27.69 27.483 27.772 0 0 0 NaN 7.9102 34 22 2 NaN NaN NaN NaN 0 NaN NaN 0 49837 + 42285 17541 26717 26729 0.01811999266362818 SRNPDNYVR 9 Unmodified _SRNPDNYVR_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000521999.5_2_8:104427674-104438288:+|nuORF;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MSMS UPN48_class_I_Rep_1 5 560.7772216796875 2 560.778336 1119.54212 NaN NaN NaN NaN NaN NaN NaN 29.605 1 33.155 32.655 33.655 3.5499 0 0 0 0.38784 1 4139 4139 3.5965 1.019 1 42286 4144 26718 26730 48455 48455 -0.012869989617229294 SRNRDNDPND 10 Unmodified _SRNRDNDPND_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000563115.5_1_16:57503603-57503684:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MSMS UPN47_class_I_Rep_2 3 601.7608032226562 2 601.760872 1201.50719 NaN NaN NaN NaN NaN NaN NaN 89.147 1 92.6 92.1 93.1 3.4525 0 0 0 0.53105 1 22152 22152 0 0 1 42287 1637 26719 26731 48456 48456 -0.08550286560330278 SRNRNRFL 8 Unmodified _SRNRNRFL_ 0 0 0 REV__ENST00000455071.1_1_6:86098335-86098551:-|nuORF REV__ENST00000455071.1_1_6:86098335-86098551:-|nuORF MSMS UPN48_class_I_Rep_1 5 531.8003540039062 2 531.799406 1061.58426 NaN NaN NaN NaN NaN NaN NaN 61.047 1 64.521 64.021 65.021 3.4737 0 0 0 0.39996 1 13552 13552 7.9102 0 1 + 42288 22404 26720 26732 48457 48457 0.05593021237314133 SRNRVIFV 8 Unmodified _SRNRVIFV_ 0 0 0 REV__L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|217|1|anti-sense REV__L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|217|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7961120605469 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 76.605 1 79.937 79.437 80.437 3.3315 0 0 0 0.40738 1 18968 18968 0.79363 0 1 + 42289 25012 26721 26733 48458 48458 0.08184288636891779 SRNRVIFV 8 Unmodified _SRNRVIFV_ 0 0 0 REV__L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|217|1|anti-sense REV__L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|217|1|anti-sense MSMS UPN47_class_I_Rep_2 3 495.79541015625 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 79.113 1 82.468 81.968 82.968 3.3554 0 0 0 0.40738 1 19678 19678 0.79363 0 1 + 42290 25012 26721 26733 48459 48459 0.08184288636891779 SRNVAHYSS 9 Unmodified _SRNVAHYSS_ 0 0 0 REV__L1MA8_dup2321|chr4:73206495-73206826:+|1.1735980599641669|0.0172902935109556|6.08|151.0|15|2|anti-sense REV__L1MA8_dup2321|chr4:73206495-73206826:+|1.1735980599641669|0.0172902935109556|6.08|151.0|15|2|anti-sense MSMS UPN47_class_I_Rep_3 4 510.7435607910156 2 510.746505 1019.47846 NaN NaN NaN NaN NaN NaN NaN 34.871 1 38.135 37.635 38.635 3.2639 0 0 0 0.38639 1 6390 6390 3.9444 0.3479 1 + 42291 25543 26722 26734 48460 48460 -0.030503593988100874 SRPAIWFL 8 Unmodified _SRPAIWFL_ 0 0 0 L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|51|1|anti-sense L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|51|1|anti-sense L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_1 5 495.28125 2 495.281995 988.549437 NaN NaN NaN NaN NaN NaN NaN 35.63 1 39.14 38.64 39.64 3.5101 0 0 0 0.40738 1 5851 5851 0.79363 0 1 42292 15351 26723 26735 48461 48461 0.05470385376645481 SRPFLLSR 8 Unmodified _SRPFLLSR_ 0 0 0 L1MEd_dup18983|chr16:75380190-75380863:+|1.0376094785003296|0.054303945620886|4.26|150.0|33|1|anti-sense L1MEd_dup18983|chr16:75380190-75380863:+|1.0376094785003296|0.054303945620886|4.26|150.0|33|1|anti-sense L1MEd_dup18983|chr16:75380190-75380863:+|1.0376094785003296|0.054303945620886|4.26|150.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.2905578613281 2 488.290351 974.566149 0.23714 0.00011579 -0.16651 -8.1307E-05 0.070628 3.4487E-05 488.29020006814704 107.8 0.22694 111.48 111.41 111.64 3.6813 50 22 4 0 0 0 0.82752 1 25431 25431 9.3831 0 1 86007000 42293 13188 26724 26736 48462 48462 0.07784886262618329 SRPFRSLL 8 Unmodified _SRPFRSLL_ 0 0 0 ENST00000497331.2_1_1:18688571-18704817:+|nuORF;ENSG00000117154|ENST00000251296|IGSF21 ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENST00000497331.2_1_1:18688571-18704817:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 488.2911376953125 2 488.290351 974.566149 0.23535 0.00011492 0.37053 0.00018093 0.60588 0.00029584 488.2904587787822 107.81 0.20436 111.35 111.28 111.48 3.5382 59 23 4 0 0 0 0.82752 1 26358 26358 10.824 0 1 53633000 42294 2213 26725 26737 48463 48463 0.07784886262629698 SRPHCVLF 8 Unmodified _SRPHCVLF_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|243|2|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|243|2|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|243|2|anti-sense MSMS UPN47_class_I_Rep_1 2 479.7506408691406 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 29.011 1 32.769 32.269 33.269 3.7578 0 0 0 0.40738 1 4548 4548 0.79363 0 1 42295 13911 26726 26738 48464 48464 0.005012819480725739 SRPMAPSPMF 10 Unmodified _SRPMAPSPMF_ 0 0 0 REV__MER21B_dup1664|chr10:48371560-48372198:-|1.288866666624365|0.0176850098957149|6.19|151.0|25|1|anti-sense REV__MER21B_dup1664|chr10:48371560-48372198:-|1.288866666624365|0.0176850098957149|6.19|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_1 5 560.7649536132812 2 560.767537 1119.52052 NaN NaN NaN NaN NaN NaN NaN 38.205 1 41.711 41.211 42.211 3.5052 0 0 0 0.53105 1 6589 6589 3.2813 0.97858 1 + 42296 31198 26727 26739 48465 48465 -0.03445843306280949 SRPQKRMKAK 10 Unmodified _SRPQKRMKAK_ 0 0 0 REV__L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|19|2|sense REV__L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 615.3674926757812 2 615.366598 1228.71864 NaN NaN NaN NaN NaN NaN NaN 82.123 1 82.123 81.623 82.623 0 0 0 0 0.53105 1 19436 19436 1.4819 0 1 + 42297 26891 26728 26740 48466 48466 0.11343338667734315 SRPQKRMKAK 10 Unmodified _SRPQKRMKAK_ 0 0 0 REV__L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|19|2|sense REV__L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 615.3680419921875 2 615.366598 1228.71864 NaN NaN NaN NaN NaN NaN NaN 84.071 1 87.668 87.168 88.168 3.5973 0 0 0 0.53105 1 20122 20122 1.4819 0 1 + 42298 26891 26728 26740 48467 48467 0.11343338667734315 SRPRPPLH 8 Unmodified _SRPRPPLH_ 0 0 0 ENST00000445726.5_1_9:34458362-34458557:-|nuORF ENST00000445726.5_1_9:34458362-34458557:-|nuORF ENST00000445726.5_1_9:34458362-34458557:-|nuORF MSMS UPN46_class_I_Rep_3 1 480.7525329589844 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 23.192 1 23.192 22.692 23.692 0 0 0 0 0.40738 1 2870 2870 0.79363 0 1 42299 6786 26729 26741 48468 48468 0.06515135322649712 SRPRTLLK 8 Unmodified _SRPRTLLK_ 0 0 0 REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7 REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7 MSMS UPN47_class_I_Rep_2 3 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.688 1 72.964 72.464 73.464 3.2761 0 0 0 0.40746 1 16938 16938 0.69038 0 1 + 42300 18018 26730 26742 48469 48469 0.12232861671009232 SRPVVLWNA 9 Unmodified _SRPVVLWNA_ 0 0 0 L1MC4_dup1053|chr1:147267669-147267917:-|1.8427004802504416|0.3478089699573047|2.41|151.0|19|3|anti-sense L1MC4_dup1053|chr1:147267669-147267917:-|1.8427004802504416|0.3478089699573047|2.41|151.0|19|3|anti-sense L1MC4_dup1053|chr1:147267669-147267917:-|1.8427004802504416|0.3478089699573047|2.41|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_3 4 521.294677734375 2 521.295633 1040.57671 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.41 110.91 111.91 3.5382 0 0 0 0.29868 1 26353 26353 10.824 0.75 1 42301 11394 26731 26743 48470 48470 0.0580486891703913 SRQDAPAEA 9 Unmodified _SRQDAPAEA_ 0 0 0 REV__ENSG00000169515|ENST00000307522|CCDC8 REV__ENSG00000169515|ENST00000307522|CCDC8 MSMS UPN46_class_I_Rep_3 1 472.7270812988281 2 472.725238 943.435923 NaN NaN NaN NaN NaN NaN NaN 53.655 1 53.655 53.155 54.155 0 0 0 0 0.10941 1 11561 11561 22.736 3.4793 1 + 42302 20316 26732 26744 48471 48471 -0.0380575452705898 SRQKHMKLIV 10 Unmodified _SRQKHMKLIV_ 0 0 0 ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI MSMS UPN48_class_I_Rep_3 7 620.371337890625 2 620.371349 1238.72815 NaN NaN NaN NaN NaN NaN NaN 88.232 1 92.042 91.542 92.542 3.8104 0 0 0 0.53105 1 20942 20942 0.40072 0 1 42303 1350 26733 26745 48472 48472 0.11833106953235983 SRQLKMILHR 10 Unmodified _SRQLKMILHR_ 0 0 0 REV__L1M1_dup3327|chr6:37963193-37963621:+|1.522750061622571|0.011471571475135|7.05|151.0|8|2|sense REV__L1M1_dup3327|chr6:37963193-37963621:+|1.522750061622571|0.011471571475135|7.05|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 641.3847045898438 2 641.382249 1280.74994 NaN NaN NaN NaN NaN NaN NaN 90.704 1 94.394 93.894 94.894 3.6899 0 0 0 0.53105 1 22653 22653 1.4819 0 1 + 42304 24079 26734 26746 48473 48473 0.12079911701812307 SRQLKMILHR 10 Unmodified _SRQLKMILHR_ 0 0 0 REV__L1M1_dup3327|chr6:37963193-37963621:+|1.522750061622571|0.011471571475135|7.05|151.0|8|2|sense REV__L1M1_dup3327|chr6:37963193-37963621:+|1.522750061622571|0.011471571475135|7.05|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 641.383056640625 2 641.382249 1280.74994 NaN NaN NaN NaN NaN NaN NaN 90.921 1 94.322 93.822 94.822 3.401 0 0 0 0.53105 1 22766 22766 1.4819 0 1 + 42305 24079 26734 26746 48474 48474 0.12079911701812307 SRQLVGFY 8 Unmodified _SRQLVGFY_ 0 0 0 REV__ENST00000462857.5_1_6:30657820-30658751:-|nuORF REV__ENST00000462857.5_1_6:30657820-30658751:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.2611389160156 2 485.261259 968.507966 NaN NaN NaN NaN NaN NaN NaN 25.556 1 28.906 28.406 29.406 3.3509 0 0 0 0.40738 1 3611 3611 0.79363 0 1 + 42306 19228 26735 26747 48475 48475 0.0224520461732709 SRQQIRGF 8 Unmodified _SRQQIRGF_ 0 0 0 REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|183|2|anti-sense REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|183|2|anti-sense MSMS UPN47_class_I_Rep_1 2 496.26373291015625 2 496.275232 990.535912 NaN NaN NaN NaN NaN NaN NaN 55.199 1 58.677 58.177 59.177 3.4785 0 0 0 0.39624 1 12510 12510 9.3474 0 1 + 42307 25078 26736 26748 48476 48476 0.0402652759743205 SRQQIRGF 8 Unmodified _SRQQIRGF_ 0 0 0 REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|183|2|anti-sense REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|183|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 496.2641296386719 2 496.275232 990.535912 0.32659 0.00016208 1.5248 0.00075672 1.8514 0.0009188 496.2756201552428 55.286 0.18701 58.596 58.569 58.756 3.3102 13 9 2 0 0 0 0.82752 1 12575 12575 5.2307 0 1 32739 + 42308 25078 26736 26748 48477 48477 0.0402652759743205 SRQQIRGF 8 Unmodified _SRQQIRGF_ 0 0 0 REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|183|2|anti-sense REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|183|2|anti-sense MSMS UPN47_class_I_Rep_2 3 496.2763671875 2 496.275232 990.535912 NaN NaN NaN NaN NaN NaN NaN 55.211 1 58.521 58.021 59.021 3.3102 0 0 0 0.40404 1 12543 12543 5.2307 0 1 + 42309 25078 26736 26748 48478 48478 0.0402652759743205 SRQRQRRRWL 10 Unmodified _SRQRQRRRWL_ 0 0 0 REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 481.28350830078125 3 481.283503 1440.82868 0.24813 0.00011942 -0.13864 -6.6724E-05 0.10949 5.2697E-05 481.28337637556626 94.597 1.1942 98.347 98.142 99.336 3.7508 273 161 3 0 0 0 0.5652 1 23708 23708 0.15932 0.01943 1 177450 + 42310 21576 26737 26749 48479 48479 0.1258990005112537 SRQRQRRRWL 10 Unmodified _SRQRQRRRWL_ 0 0 0 REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF REV__ENST00000263754.4_1_3:20081618-20081714:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 481.2833557128906 3 481.283503 1440.82868 0.23786 0.00011448 -0.02504 -1.2051E-05 0.21282 0.00010242 481.283432795858 94.401 1.3316 98.177 97.432 98.764 3.7761 339 182 3 0 0 0 0.84575 1 22458 22458 0.77653 0.77653 1 505130 + 42311 21576 26737 26749 48480 48480 0.1258990005112537 SRQWRKKA 8 Unmodified _SRQWRKKA_ 0 0 0 ENSG00000156886|ENST00000389202|ITGAD ENSG00000156886|ENST00000389202|ITGAD ENSG00000156886|ENST00000389202|ITGAD MULTI-MSMS UPN47_class_I_Rep_2 3 530.8150634765625 2 530.312149 1058.60975 -0.16428 -8.7118E-05 1.3783 0.00073091 1.214 0.0006438 530.3125928227203 38.719 1.0672 42.098 41.669 42.736 3.3785 99 71 2 0 0 0 0.82752 1 7622 7622 2.3027 0 1 122330 42312 3744 26738 26750 48481 48481 0.0827849575973687 SRRANLII 8 Unmodified _SRRANLII_ 0 0 0 ENSG00000129925|ENST00000431232|PGAP6 ENSG00000129925|ENST00000431232|PGAP6 ENSG00000129925|ENST00000431232|PGAP6 MSMS UPN48_class_I_Rep_2 6 471.7956848144531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 60.544 1 64.023 63.523 64.523 3.4785 0 0 0 0.40581 1 13379 13379 2.8892 0 1 42313 2633 26739 26751 48482 48482 0.10392288636899139 SRRANLII 8 Unmodified _SRRANLII_ 0 0 0 ENSG00000129925|ENST00000431232|PGAP6 ENSG00000129925|ENST00000431232|PGAP6 ENSG00000129925|ENST00000431232|PGAP6 MSMS UPN48_class_I_Rep_2 6 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 89.408 1 93.146 92.646 93.646 3.7379 0 0 0 0.40404 1 21301 21301 5.2307 0 1 42314 2633 26739 26751 48483 48483 0.10392288636899139 SRREHFVE 8 Unmodified _SRREHFVE_ 0 0 0 REV__Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|9|1|sense REV__Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 529.8134155273438 2 530.270147 1058.52574 NaN NaN NaN NaN NaN NaN NaN 35.855 1 39.522 39.022 40.022 3.6667 0 0 0 0.40472 1 5866 5866 4.3292 0 1 + 42315 32367 26740 26752 48484 48484 -0.0011808012779965793 SRRFSPVN 8 Unmodified _SRRFSPVN_ 0 0 0 REV__ENST00000409881.1_1_7:30898614-30931617:+|nuORF REV__ENST00000409881.1_1_7:30898614-30931617:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 481.76202392578125 2 481.761958 961.509363 -0.77115 -0.00037151 0.52268 0.0002518 -0.24847 -0.00011971 481.76223572316263 13.868 0.20226 17.237 17.147 17.349 3.3697 27 22 2 0 0 0 0.82752 1 407 407 2.3027 0 1 29909 + 42316 22187 26741 26753 48485 48485 0.02706838706092185 SRRGSGDTSSL 11 Unmodified _SRRGSGDTSSL_ 0 0 0 nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2;ENSG00000093167.18,LRRFIP2,chr3,-,I15.1,37112981,37115053|63|6.8|2|intron nc|ENSG00000093167|Q9Y608-2|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 MULTI-MSMS UPN47_class_I_Rep_1 2 562.2807006835938 2 561.778533 1121.54251 0.4054 0.00022775 0.97809 0.00054947 1.3835 0.00077721 561.7788537168271 58.843 0.44041 62.26 62.107 62.547 3.4171 35 29 2 0 0 0 0.56174 1 13626 13626 6.1918 0.46 1 55516 42317 1402 26742 26754 48486 48486 -0.013396240325164399 SRRGSGDTSSL 11 Unmodified _SRRGSGDTSSL_ 0 0 0 nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2;ENSG00000093167.18,LRRFIP2,chr3,-,I15.1,37112981,37115053|63|6.8|2|intron nc|ENSG00000093167|Q9Y608-2|LRRFIP2 nc|ENSG00000093167|Q9Y608-2|LRRFIP2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 561.778533 1121.54251 0.51232 0.00028781 0.64141 0.00036033 1.1537 0.00064814 561.7789116245899 59.234 0.090828 62.513 62.46 62.551 3.2786 0.12665 -0.00032362 NaN 6.1918 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 49340 42318 1402 26742 26754 -0.013396240325164399 SRRKHRRRRR 10 Unmodified _SRRKHRRRRR_ 0 0 0 nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;ENST00000484699.1_1_1:155239218-155239476:-|nuORF;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF nc|ENSG00000176444|P49760-3|CLK2 nc|ENSG00000176444|P49760-3|CLK2 MSMS UPN48_class_I_Rep_1 5 488.64111328125 3 488.642025 1462.90425 NaN NaN NaN NaN NaN NaN NaN 61.347 1 64.815 64.315 65.315 3.4678 0 0 0 0.53105 1 13641 13641 0.15932 0 1 42319 4760 26743 26755 48487 48487 0.19130922022031882 SRRKRKSY 8 Unmodified _SRRKRKSY_ 0 0 0 ENST00000529348.1_1_11:130109693-130131768:-|nuORF;nc|ENSG00000196323|Q8NCP5-3|ZBTB44;nc|ENSG00000196323|Q8NCP5-4|ZBTB44;nc|ENSG00000196323|Q8NCP5-2|ZBTB44;nc|ENSG00000196323|Q8NCP5|ZBTB44;ENSG00000196323|ENST00000357899|ZBTB44 ENST00000529348.1_1_11:130109693-130131768:-|nuORF ENST00000529348.1_1_11:130109693-130131768:-|nuORF MSMS UPN46_class_I_Rep_3 1 541.2605590820312 2 540.822881 1079.63121 NaN NaN NaN NaN NaN NaN NaN 38.776 1 38.776 38.276 39.276 0 0 0 0 0.40746 1 7406 7406 0.69038 0 1 42320 5295 26744 26756 48488 48488 0.09457880788477269 SRRKVRKY 8 Unmodified _SRRKVRKY_ 0 0 0 L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense MSMS UPN47_class_I_Rep_1 2 546.8408203125 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 93.035 1 96.756 96.256 97.256 3.7209 0 0 0 0.40746 1 23159 23159 0.69038 0 1 42321 13948 26745 26757 48489 48489 0.12542757685173456 SRRLLFPLLV 10 Unmodified _SRRLLFPLLV_ 0 0 0 REV__Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|73|2|anti-sense REV__Tigger1_dup11040|chr18:255036-256601:+|1.3238637429843363|0.1428054555097852|3.21|151.0|73|2|anti-sense MSMS UPN47_class_I_Rep_1 2 405.26324462890625 3 405.264164 1212.77066 NaN NaN NaN NaN NaN NaN NaN 97.624 1 101.41 100.91 101.91 3.7861 0 0 0 0.53105 1 24188 24188 0.77653 0 1 + 42322 32348 26746 26758 48490 48490 0.17278825353128013 SRRLRHSN 8 Unmodified _SRRLRHSN_ 0 0 0 ENST00000569969.5_2_16:28993554-28995617:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1 ENST00000569969.5_2_16:28993554-28995617:+|nuORF ENST00000569969.5_2_16:28993554-28995617:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.2909545898438 2 513.289205 1024.56386 NaN NaN NaN NaN NaN NaN NaN 77.144 1 80.413 79.913 80.913 3.269 0 0 0 0.40625 1 19198 19198 2.3027 0 1 42323 4431 26747 26759 48491 48491 0.05255850577509591 SRRMKLRHR 9 Unmodified _SRRMKLRHR_ 0 0 0 L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|78|2|sense L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|78|2|sense L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|78|2|sense MSMS UPN47_class_I_Rep_2 3 620.3710327148438 2 620.370007 1238.72546 NaN NaN NaN NaN NaN NaN NaN 88.768 1 92.22 91.72 92.72 3.4525 0 0 0 0.4007 1 22064 22064 0.52476 0 1 42324 8539 26748 26760 48492 48492 0.11564696338950853 SRRPINRQ 8 Unmodified _SRRPINRQ_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MSMS UPN47_class_I_Rep_1 2 513.7980346679688 2 513.799406 1025.58426 NaN NaN NaN NaN NaN NaN NaN 94.215 1 97.966 97.466 98.466 3.7508 0 0 0 0.4044 1 23416 23416 4.756 0 1 42325 3808 26749 26761 48493 48493 0.0724902123731681 SRRPINRQ 8 Unmodified _SRRPINRQ_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MSMS UPN47_class_I_Rep_2 3 513.797607421875 2 513.799406 1025.58426 NaN NaN NaN NaN NaN NaN NaN 94.225 1 97.697 97.197 98.197 3.472 0 0 0 0.4044 1 23230 23230 4.756 0 1 42326 3808 26749 26761 48494 48494 0.0724902123731681 SRRPINRQ 8 Unmodified _SRRPINRQ_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MSMS UPN47_class_I_Rep_2 3 513.8065185546875 2 513.799406 1025.58426 NaN NaN NaN NaN NaN NaN NaN 94.406 1 97.878 97.378 98.378 3.472 0 0 0 0.40625 1 23270 23270 2.3027 0 1 42327 3808 26749 26761 48495 48495 0.0724902123731681 SRRRDGRR 8 Unmodified _SRRRDGRR_ 0 0 0 REV__ENSG00000075539|ENST00000358350|FRYL REV__ENSG00000075539|ENST00000358350|FRYL MSMS UPN48_class_I_Rep_3 7 529.8054809570312 2 529.805554 1057.59655 NaN NaN NaN NaN NaN NaN NaN 23.681 1 27.45 26.95 27.95 3.769 0 0 0 0.40798 1 2634 2634 0 0 1 + 42328 17856 26750 26762 48496 48496 0.07006057700368729 SRRRKKRFRQE 11 Unmodified _SRRRKKRFRQE_ 0 0 0 REV__nc|ENSG00000186854|Q86V40-2|TRABD2A REV__nc|ENSG00000186854|Q86V40-2|TRABD2A MULTI-MSMS UPN48_class_I_Rep_1 5 516.309814453125 3 516.309829 1545.90766 0.2507 0.00012944 0.338 0.00017451 0.5887 0.00030395 516.6443001255827 97.297 0.6124 100.91 100.51 101.12 3.6088 131 78 3 0 0 0 0.68478 1 23489 23489 0.094841 0.094841 1 330040 + 42329 20907 26751 26763 48497 48497 0.15654127285415598 SRRRKRRRRRR 11 Unmodified _SRRRKRRRRRR_ 0 0 0 REV__L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|19|2|sense REV__L1PA10_dup2192|chr5:78068343-78070128:+|2.049666127262864|0.0216434324976764|6.57|151.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 547.0247802734375 3 547.023128 1638.04756 NaN NaN NaN NaN NaN NaN NaN 32.063 1 35.589 35.089 36.089 3.5266 0 0 0 0.38417 1 4826 4826 0 0 1 + 42330 28945 26752 26764 48498 48498 0.2540534913312058 SRRRRRKRKK 10 Unmodified _SRRRRRKRKK_ 0 0 0 REV__ENST00000467963.5_3_5:889215-891867:-|nuORF REV__ENST00000467963.5_3_5:889215-891867:-|nuORF MSMS UPN48_class_I_Rep_2 6 476.306640625 3 476.318659 1425.93415 NaN NaN NaN NaN NaN NaN NaN 49.042 1 52.759 52.259 53.259 3.7175 0 0 0 0.53105 1 9865 9865 0.62683 0 1 + 42331 22485 26753 26765 48499 48499 0.23821860967382236 SRRRRRRHKR 10 Unmodified _SRRRRRRHKR_ 0 0 0 REV__nc|ENSG00000176444|P49760-3|CLK2 REV__nc|ENSG00000176444|P49760-3|CLK2 MSMS UPN48_class_I_Rep_2 6 488.6405334472656 3 488.642025 1462.90425 NaN NaN NaN NaN NaN NaN NaN 61.353 1 64.831 64.331 65.331 3.4782 0 0 0 0.53105 1 13623 13623 0.13989 0 1 + 42332 20588 26754 26766 48500 48500 0.19130922022031882 SRRRRTKK 8 Unmodified _SRRRRTKK_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS UPN48_class_I_Rep_1 5 544.3496704101562 2 544.349597 1086.68464 0.45453 0.00024742 0.37517 0.00020422 0.8297 0.00045165 544.349581543756 74.709 0.28442 78.199 78.063 78.348 3.49 43 26 2 0 0 0 0.82752 2 17670 17670;17677 0 0 1 154900 42333 5157 26755 26767 48501;48502 48501 0.1447667829099828 SRRRRTKK 8 Unmodified _SRRRRTKK_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MULTI-MATCH UPN48_class_I_Rep_2 6 2 544.349597 1086.68464 0.47768 0.00026002 2.2607 0.0012306 2.7384 0.0014907 544.3505010017165 74.617 0.077271 78.207 78.14 78.217 3.59 0.0039242 0.001615 NaN 0 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 103960 42334 5157 26755 26767 0.1447667829099828 SRRSKIID 8 Unmodified _SRRSKIID_ 0 0 0 Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|42|3|sense Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|42|3|sense Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|42|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.79071044921875 2 487.790715 973.566878 0.24942 0.00012167 0.038685 1.887E-05 0.28811 0.00014053 487.7906201728124 75.413 0.14056 79.003 78.944 79.085 3.59 28 16 2 0 0 0 0.82752 1 17778 17778 2.5775 0 1 146450 42335 33092 26756 26768 48503 48503 0.07903680911670108 SRRTGPPLSS 10 Unmodified _SRRTGPPLSS_ 0 0 0 REV__nc|ENSG00000140264|P84101-3|SERF2 REV__nc|ENSG00000140264|P84101-3|SERF2 MSMS UPN46_class_I_Rep_3 1 529.4713134765625 2 529.291079 1056.56761 NaN NaN NaN NaN NaN NaN NaN 82.08 1 82.08 81.58 82.58 0 0 0 0 0.53105 1 19423 19423 1.4819 0 1 + 42336 31994 26757 26769 48504 48504 0.041584755607118495 SRRYIWLI 8 Unmodified _SRRYIWLI_ 0 0 0 REV__Charlie1a_dup5626|chr21:15773671-15775033:-|1.3268938649307955|0.036403851448983|5.19|151.0|70|1|anti-sense REV__Charlie1a_dup5626|chr21:15773671-15775033:-|1.3268938649307955|0.036403851448983|5.19|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_2 6 553.8270874023438 2 553.827101 1105.63965 NaN NaN NaN NaN NaN NaN NaN 67.503 1 71 70.5 71.5 3.4964 0 0 0 0.40738 1 15506 15506 0.79363 0.10326 1 + 42337 17345 26758 26770 48505 48505 0.09105434705088555 SRSFLTMLAAC 11 Unmodified _SRSFLTMLAAC_ 0 0 0 L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|69|2|anti-sense;L1MB7_dup19949|chr17:45527126-45528294:+|1.3751843417128908|0.0710448626903553|4.27|151.0|69|2|anti-sense L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|69|2|anti-sense L1MB7_dup19994|chr17:47040292-47041452:-|2.011109987215292|0.1082347148694828|4.22|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_2 3 600.3014526367188 2 600.299201 1198.58385 NaN NaN NaN NaN NaN NaN NaN 72.075 1 75.365 74.865 75.865 3.2899 0 0 0 0.38417 1 17648 17648 1.0715 0.38109 1 42338 10778 26759 26771 48506 48506 -0.007499025890410849 SRSISLMLCP 10 Unmodified _SRSISLMLCP_ 0 0 0 Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|12|1|sense Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|12|1|sense Tigger2_dup2468|chr17:9404753-9406849:-|1.2080984882157542|0.0182931455859667|6.05|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 553.7899780273438 2 553.788469 1105.56239 NaN NaN NaN NaN NaN NaN NaN 87.729 1 91.366 90.866 91.866 3.6372 0 0 0 0.53105 1 21926 21926 1.3295 0 1 42339 33305 26760 26772 48507 48507 0.013827123822011345 SRSKQRRK 8 Unmodified _SRSKQRRK_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense MSMS UPN46_class_I_Rep_3 1 523.3037109375 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 83.725 1 83.725 83.225 84.225 0 0 0 0 0.40292 1 19900 19900 6.7232 0 1 + 42340 29125 26761 26773 48508 48508 0.10592996645709718 SRSKQRRK 8 Unmodified _SRSKQRRK_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense MSMS UPN47_class_I_Rep_1 2 523.303466796875 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 79.732 1 83.197 82.697 83.697 3.465 0 0 0 0.40527 1 19877 19877 3.5965 0 1 + 42341 29125 26761 26773 48509 48509 0.10592996645709718 SRSKQRRK 8 Unmodified _SRSKQRRK_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense MSMS UPN48_class_I_Rep_1 5 523.3035278320312 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 79.452 1 82.987 82.487 83.487 3.5352 0 0 0 0.40527 1 18966 18966 3.5965 0 1 + 42342 29125 26761 26773 48510 48510 0.10592996645709718 SRSKQRRK 8 Unmodified _SRSKQRRK_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense MSMS UPN48_class_I_Rep_2 6 523.3037719726562 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 79.133 1 82.766 82.266 83.266 3.6331 0 0 0 0.40292 1 18788 18788 6.7232 0 1 + 42343 29125 26761 26773 48511 48511 0.10592996645709718 SRSKQRRK 8 Unmodified _SRSKQRRK_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense MSMS UPN48_class_I_Rep_3 7 523.3037719726562 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 79.037 1 82.68 82.18 83.18 3.6423 0 0 0 0.40472 1 18728 18728 4.3292 0 1 + 42344 29125 26761 26773 48512 48512 0.10592996645709718 SRSKQRRK 8 Unmodified _SRSKQRRK_ 0 0 0 REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense REV__L1PA13_dup6854|chr12:28286207-28289680:-|1.130236923039828|0.0517691162830612|4.45|150.0|88|3|sense MSMS UPN48_class_I_Rep_3 7 523.303955078125 2 523.320506 1044.62646 NaN NaN NaN NaN NaN NaN NaN 79.157 1 82.8 82.3 83.3 3.6423 0 0 0 0.40292 1 18761 18761 6.7232 0 1 + 42345 29125 26761 26773 48513 48513 0.10592996645709718 SRSLLSHHKL 10 Unmodified _SRSLLSHHKL_ 0 0 0 REV__ENST00000531709.6_1_11:62566050-62566089:-|nuORF REV__ENST00000531709.6_1_11:62566050-62566089:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 589.3428955078125 2 589.343646 1176.67274 0.48522 0.00028596 -0.62669 -0.00036934 -0.14147 -8.3374E-05 589.3430572768855 85.269 0.19194 88.641 88.496 88.688 3.3716 41 29 2 0 0 0 0.54822 1 21380 21380 5.7319 0.83484 1 717520 + 42346 22858 26762 26774 48514 48514 0.09147016757151505 SRSQQWLLR 9 Unmodified _SRSQQWLLR_ 0 0 0 ENSG00000144278|ENST00000392825|GALNT13;ENSG00000141429|ENST00000269195|GALNT1 ENSG00000144278|ENST00000392825|GALNT13 ENSG00000144278|ENST00000392825|GALNT13 MSMS UPN46_class_I_Rep_3 1 587.3280029296875 2 587.327996 1172.64144 NaN NaN NaN NaN NaN NaN NaN 60.173 1 60.173 59.673 60.673 0 0 0 0 0.39518 1 13336 13336 1.8442 0 1 42347 3347 26763 26775 48515 48515 0.06202443723032047 SRSRKGPQL 9 Unmodified _SRSRKGPQL_ 0 0 0 REV__nc|ENSG00000142733|O95382-2|MAP3K6 REV__nc|ENSG00000142733|O95382-2|MAP3K6 MSMS UPN46_class_I_Rep_3 1 514.800537109375 2 514.801614 1027.58868 NaN NaN NaN NaN NaN NaN NaN 91.475 1 91.475 90.975 91.975 0 0 0 0 0.39518 1 22099 22099 1.8442 0 1 + 42348 19416 26764 26776 48516 48516 0.0759848566024175 SRSRKVPL 8 Unmodified _SRSRKVPL_ 0 0 0 MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense MER39_dup2214|chr10:26525629-26526123:-|1.25708613059855|0.0153431739925084|6.36|151.0|10|3|sense MSMS UPN47_class_I_Rep_2 3 471.79522705078125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 32.794 1 36.249 35.749 36.749 3.4547 0 0 0 0.40625 1 5728 5728 2.3027 0 1 42349 15930 26765 26777 48517 48517 0.10392288636899139 SRSRSRSHG 9 Unmodified _SRSRSRSHG_ 0 0 0 ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN ENSG00000105298|ENST00000429344|CACTIN ENSG00000105298|ENST00000429344|CACTIN MSMS UPN47_class_I_Rep_1 2 515.269775390625 2 515.26847 1028.52239 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.29 114.79 115.79 3.572 0 0 0 0.39518 1 27567 27567 1.8442 0 1 42350 1729 26766 26778 48518 48518 0.009266698181818356 SRSSPILI 8 Unmodified _SRSSPILI_ 0 0 0 REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|100|3|sense REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|100|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 436.7640380859375 2 436.763635 871.512717 -0.37581 -0.00016414 0.59973 0.00026194 0.22393 9.7803E-05 436.76370628542776 54.417 0.86301 57.602 57.211 58.074 3.1856 94 52 2 0 0 0 0.82752 1 12263 12263 4.3292 0 1 156940 + 42351 23872 26767 26779 48519 48519 0.07182088760112038 SRSVAKHHIV 10 Unmodified _SRSVAKHHIV_ 0 0 0 REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|67|1|anti-sense REV__HERV4_I-int_dup13|chr1:155655994-155658020:-|1.1382637144821577|0.0938736147894758|3.6|151.0|67|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.3309326171875 2 567.330539 1132.64652 0.48418 0.00027469 0.50504 0.00028652 0.98922 0.00056122 567.3306874299158 81.265 0.44016 84.922 84.601 85.041 3.6567 92 57 2 0 0 0 0.56118 1 19267 19267 2.9952 2.9952 1 269250 + 42352 23595 26768 26780 48520 48520 0.08550747585650242 SRTLIQIQA 9 Unmodified _SRTLIQIQA_ 0 0 0 REV__ENSG00000116031|ENST00000410009|CD207 REV__ENSG00000116031|ENST00000410009|CD207 MULTI-SECPEP UPN47_class_I_Rep_1 2 515.306396484375 2 515.306198 1028.59784 -0.24166 -0.00012453 0.012646 6.5168E-06 -0.22901 -0.00011801 515.3061381113216 14.308 0.24861 17.783 17.641 17.89 3.475 40 30 2 0 0 0 0.12321 1 534 534 3.9444 0 1 29555 + 42353 18592 26769 26781 48521 48521 0.08468834225914179 SRTLYQIFTI 10 Unmodified _SRTLYQIFTI_ 0 0 0 REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|50|2|sense REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|50|2|sense MSMS UPN48_class_I_Rep_2 6 621.3480224609375 2 621.348063 1240.68157 NaN NaN NaN NaN NaN NaN NaN 95.557 1 99.338 98.838 99.838 3.7804 0 0 0 0.53105 1 22710 22710 1.4819 0 1 + 42354 25849 26770 26782 48522 48522 0.07085945602921129 SRTPYVFQF 9 Unmodified _SRTPYVFQF_ 0 0 0 REV__HERVH-int_dup1611|chr4:71031921-71033061:+|1.6004550779695983|0.0310677380357343|5.69|150.0|8|1|sense REV__HERVH-int_dup1611|chr4:71031921-71033061:+|1.6004550779695983|0.0310677380357343|5.69|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 572.7930297851562 2 572.792924 1143.57129 0.47436 0.00027171 -0.71149 -0.00040754 -0.23713 -0.00013583 572.7925569680389 70.602 0.63367 74.138 73.799 74.433 3.5359 118 68 2 0 0 0 0.35081 1 16414 16414 10.824 0 1 157140 + 42355 23653 26771 26783 48523 48523 0.005251453345636037 SRVERRRLQTI 11 Unmodified _SRVERRRLQTI_ 0 0 0 L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|74|2|sense L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|74|2|sense L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|74|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.9520263671875 3 471.951419 1412.83243 0.21143 9.9785E-05 1.2643 0.0005967 1.4758 0.00069649 471.9518006819334 98.648 0.32882 102.42 102.35 102.68 3.7707 80 45 2 0 0 0 0.68024 1 23467 23467 0.50596 0 1 299720 42356 14483 26772 26784 48524 48524 0.14252525034316932 SRVGRVAALP 10 Unmodified _SRVGRVAALP_ 0 0 0 REV__ENST00000453514.5_1_5:78908331-78908559:+|nuORF REV__ENST00000453514.5_1_5:78908331-78908559:+|nuORF MSMS UPN48_class_I_Rep_1 5 513.3161010742188 2 513.314358 1024.61416 NaN NaN NaN NaN NaN NaN NaN 57.672 1 61.166 60.666 61.666 3.4942 0 0 0 0.53105 1 12515 12515 2.7352 0.43246 1 + 42357 22248 26773 26785 48525 48525 0.10283960182641749 SRVLKVLFFLS 11 Unmodified _SRVLKVLFFLS_ 0 0 0 REV__L1MC2_dup2396|chr7:123731013-123732045:+|1.0570171466397864|0.1123422618378848|3.23|151.0|45|1|anti-sense REV__L1MC2_dup2396|chr7:123731013-123732045:+|1.0570171466397864|0.1123422618378848|3.23|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 437.2667541503906 3 436.939458 1307.79654 0.097195 4.2468E-05 0.95584 0.00041764 1.053 0.00046011 436.93964321086753 50.829 0.55013 54.497 54.351 54.901 3.6679 40 32 2 0 0 0 0.67649 1 10435 10435 0.84494 0.14728 1 86529 + 42358 26647 26774 26786 48526 48526 0.15495674804765258 SRVLNPLL 8 Unmodified _SRVLNPLL_ 0 0 0 L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|84|2|anti-sense L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|84|2|anti-sense L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_3 4 456.28729248046875 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 23.955 1 27.306 26.806 27.806 3.3509 0 0 0 0.40643 1 3134 3134 2.0598 0 1 42359 8716 26775 26787 48527 48527 0.1011436803109973 SRVLNPLL 8 Unmodified _SRVLNPLL_ 0 0 0 L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|84|2|anti-sense L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|84|2|anti-sense L1M2_dup8458|chr18:2713700-2715579:-|3.540085948375725|0.2312351810964506|3.94|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_3 4 456.28656005859375 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 24.287 1 27.637 27.137 28.137 3.3509 0 0 0 0.40625 1 3234 3234 2.3027 0 1 42360 8716 26775 26787 48528 48528 0.1011436803109973 SRVPDSAAF 9 Unmodified _SRVPDSAAF_ 0 0 0 REV__nc|ENSG00000165238|Q9Y3S1|WNK2 REV__nc|ENSG00000165238|Q9Y3S1|WNK2 MSMS UPN46_class_I_Rep_3 1 475.25396728515625 2 475.240524 948.466495 NaN NaN NaN NaN NaN NaN NaN 36.294 1 36.294 35.794 36.794 0 0 0 0 0.10315 1 6712 6712 24.021 0 1 + 42361 32043 26776 26788 48529 48529 -0.009799761420026698 SRVRHRLTRK 10 Unmodified _SRVRHRLTRK_ 0 0 0 L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|127|3|sense L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|127|3|sense L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|127|3|sense MSMS UPN48_class_I_Rep_1 5 436.93994140625 3 436.940966 1307.80107 NaN NaN NaN NaN NaN NaN NaN 55.367 1 58.875 58.375 59.375 3.5082 0 0 0 0.53105 1 11811 11811 0.62683 0 1 42362 14405 26777 26789 48530 48530 0.15947996790850993 SRVRNVHL 8 Unmodified _SRVRNVHL_ 0 0 0 L1ME2_dup2981|chr3:142489379-142490061:-|2.15401508084704|0.0723817540088389|4.9|151.0|12|1|sense L1ME2_dup2981|chr3:142489379-142490061:-|2.15401508084704|0.0723817540088389|4.9|151.0|12|1|sense L1ME2_dup2981|chr3:142489379-142490061:-|2.15401508084704|0.0723817540088389|4.9|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 490.7823181152344 2 490.79105 979.567546 NaN NaN NaN NaN NaN NaN NaN 111.55 1 111.55 111.05 112.05 0 0 0 0 0.40746 1 27510 27510 0.69038 0 1 42363 12500 26778 26790 48531 48531 0.07694520351378742 SRVVKLLGVI 10 Unmodified _SRVVKLLGVI_ 0 0 0 ENSG00000137275.15,RIPK1,chr6,+,I10.1,3089658,3090657|44|8.9|2|intron;nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1 ENSG00000137275.15,RIPK1,chr6,+,I10.1,3089658,3090657|44|8.9|2|intron ENSG00000137275.15,RIPK1,chr6,+,I10.1,3089658,3090657|44|8.9|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 542.3662719726562 2 542.366059 1082.71756 0.53487 0.0002901 0.16676 9.0445E-05 0.70163 0.00038054 542.3660014127903 108.23 0.68577 111.87 111.48 112.17 3.6355 167 59 4 0 0 0 0.56478 1 26658 26658 0.45834 0 1 10887000 42364 3020 26779 26791 48532 48532 0.17951447570476375 SRWEKILAV 9 Unmodified _SRWEKILAV_ 0 0 0 L1ME3F_dup3463|chr13:28054855-28055080:-|2.230948691072984|0.003831786016636|9.19|151.0|7|3|sense L1ME3F_dup3463|chr13:28054855-28055080:-|2.230948691072984|0.003831786016636|9.19|151.0|7|3|sense L1ME3F_dup3463|chr13:28054855-28055080:-|2.230948691072984|0.003831786016636|9.19|151.0|7|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 550.8243408203125 2 551.324391 1100.63423 0.03505 1.9324E-05 3.1039 0.0017112 3.1389 0.0017306 551.32657346116 30.219 0.069386 33.701 33.666 33.735 3.4821 6 4 2 0 0 0 0.12281 1 4949 4949 4.3292 0 1 29128 42365 12819 26780 26792 48533 48533 0.08793711122621062 SRWFVSSFPV 10 Unmodified _SRWFVSSFPV_ 0 0 0 REV__L1M2_dup3176|chr5:179996337-179997125:-|10.330475120672192|0.1110649560565113|6.54|151.0|46|2|anti-sense REV__L1M2_dup3176|chr5:179996337-179997125:-|10.330475120672192|0.1110649560565113|6.54|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.3140258789062 2 606.314023 1210.61349 0.43451 0.00026345 0.39662 0.00024048 0.83113 0.00050393 606.3137977516633 55.513 0.76881 59.069 58.743 59.512 3.5554 89 49 3 0 0 0 0.56118 1 11778 11778 2.9952 0 1 216120 + 42366 24194 26781 26793 48534 48534 0.0166112074296052 SRWGHFLWHA 10 Unmodified _SRWGHFLWHA_ 0 0 0 ENST00000439875.1_1_9:115871246-115871747:-|nuORF ENST00000439875.1_1_9:115871246-115871747:-|nuORF ENST00000439875.1_1_9:115871246-115871747:-|nuORF MSMS UPN46_class_I_Rep_3 1 432.8851318359375 3 432.884346 1295.63121 NaN NaN NaN NaN NaN NaN NaN 99.734 1 99.734 99.234 100.23 0 0 0 0 0.53105 1 24305 24305 0.15932 0.01943 1 42367 6770 26782 26794 48535 48535 -0.004781192115387967 SRWHTRLSK 9 Unmodified _SRWHTRLSK_ 0 0 0 REV__ENST00000446760.2_1:146412138-146412798:+|nuORF REV__ENST00000446760.2_1:146412138-146412798:+|nuORF MSMS UPN48_class_I_Rep_1 5 585.8272094726562 2 585.828163 1169.64177 NaN NaN NaN NaN NaN NaN NaN 72.443 1 75.916 75.416 76.416 3.4732 0 0 0 0.39036 1 17002 17002 2.9952 0 1 + 42368 22363 26783 26795 48536 48536 0.06373863442877337 SRYRIPFF 8 Unmodified _SRYRIPFF_ 0 0 0 REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense MSMS UPN48_class_I_Rep_2 6 543.27783203125 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 31.561 1 35.202 34.702 35.702 3.641 0 0 0 0.40738 1 4764 4764 0.79363 0 1 + 42369 23659 26784 26796 48537 48537 0.042891727796586565 SRYRIPFF 8 Unmodified _SRYRIPFF_ 0 0 0 REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense REV__HERVH-int_dup2249|chr5:131572673-131578926:+|3.915555779326712|0.1135654729070211|5.11|151.0|122|3|sense MSMS UPN48_class_I_Rep_3 7 543.2996215820312 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 29.563 1 33.291 32.791 33.791 3.7286 0 0 0 0.40738 1 4160 4160 0.79363 0 1 + 42370 23659 26784 26796 48538 48538 0.042891727796586565 SRYVIWEL 8 Unmodified _SRYVIWEL_ 0 0 0 L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|129|2|anti-sense L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|129|2|anti-sense L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|129|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 533.7796020507812 2 533.290017 1064.56548 0.37656 0.00020082 -0.17613 -9.393E-05 0.20043 0.00010689 533.2899709189446 61.713 0.66304 65.081 64.642 65.305 3.3681 60 48 2 0 0 0 0.82752 1 14452 14452 12.532 0 1 88023 42371 8609 26785 26797 48539 48539 0.03578046822894976 SSALLLLYF 9 Unmodified _SSALLLLYF_ 0 0 0 L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|128|1|anti-sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|128|1|anti-sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|128|1|anti-sense MSMS UPN48_class_I_Rep_1 5 513.8395385742188 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 72.89 1 76.364 75.864 76.864 3.4732 0 0 0 0.39428 1 17139 17139 2.0598 1.2661 1 42372 10476 26786 26798 48540 48540 0.067966992511856 SSASRKRLDK 10 Unmodified _SSASRKRLDK_ 0 0 0 ENST00000497465.1_1_15:44065316-44067617:-|nuORF;nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF ENST00000497465.1_1_15:44065316-44067617:-|nuORF ENST00000497465.1_1_15:44065316-44067617:-|nuORF MSMS UPN48_class_I_Rep_3 7 574.3294677734375 2 574.330736 1146.64692 NaN NaN NaN NaN NaN NaN NaN 76.715 1 80.298 79.798 80.798 3.5831 0 0 0 0.53105 1 18079 18079 1.6526 0 1 42373 2607 26787 26799 48541 48541 0.07946122514840681 SSAVIVPQPE 10 Unmodified _SSAVIVPQPE_ 0 0 0 nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N1526Kfs*8|1|0.07|ENSG00000153827|chr2:229788833-229788834|-/T|frameshift_variant nc|ENSG00000153827|Q14669|TRIP12 nc|ENSG00000153827|Q14669|TRIP12 MSMS UPN48_class_I_Rep_2 6 513.7780151367188 2 513.776939 1025.53933 NaN NaN NaN NaN NaN NaN NaN 68.733 1 72.242 71.742 72.742 3.5083 0 0 0 0.53105 1 15871 15871 2.7352 0.15772 1 42374 3651 26788 26800 48542 48542 0.027577328607549134 SSCCPCCWCCL 11 Unmodified _SSCCPCCWCCL_ 0 0 0 REV__ENSG00000178750|ENST00000315099|STX19 REV__ENSG00000178750|ENST00000315099|STX19 MSMS UPN47_class_I_Rep_1 2 604.1802368164062 2 604.180211 1206.34587 NaN NaN NaN NaN NaN NaN NaN 114.7 1 118.28 117.78 118.78 3.5809 0 0 0 0.38417 1 28351 28351 0 0 1 + 42375 20658 26789 26801 48543 48543 -0.2490499410130269 SSCYCDSCDQE 11 Unmodified _SSCYCDSCDQE_ 0 0 0 REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|312|3|anti-sense REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|312|3|anti-sense MSMS UPN47_class_I_Rep_3 4 620.1829833984375 2 620.183571 1238.35259 NaN NaN NaN NaN NaN NaN NaN 115.88 1 119.34 118.84 119.84 3.462 0 0 0 0.38417 1 28506 28506 0 0 1 + 42376 30393 26790 26802 48544 48544 -0.25705363143742943 SSDAHTSYY 9 Unmodified _SSDAHTSYY_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS UPN47_class_I_Rep_1 2 515.7090454101562 2 515.709254 1029.40395 -0.21291 -0.0001098 0.29005 0.00014958 0.07714 3.9782E-05 515.7092715857206 21.512 0.6864 25.187 24.823 25.51 3.6749 138 72 2 0 0 0 0.18929 3 2300 2300;2335;2402 21.747 9.2151 1 114170 42377 1487 26791 26803 48545;48546;48547 48545 -0.10957167000856316 SSDAHTSYY 9 Unmodified _SSDAHTSYY_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN47_class_I_Rep_2 3 515.7089233398438 2 515.709254 1029.40395 NaN NaN NaN NaN NaN NaN NaN 21.583 1 25.007 24.507 25.507 3.4241 0 0 0 0.11494 1 2434 2434 21.747 3.6117 1 42378 1487 26791 26803 48548 48548 -0.10957167000856316 SSDAHTSYY 9 Unmodified _SSDAHTSYY_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN47_class_I_Rep_2 3 515.7090454101562 2 515.709254 1029.40395 NaN NaN NaN NaN NaN NaN NaN 21.705 1 25.129 24.629 25.629 3.4241 0 0 0 0.081393 1 2466 2466 28.487 3.813 1 42379 1487 26791 26803 48549 48549 -0.10957167000856316 SSDAHTSYY 9 Unmodified _SSDAHTSYY_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MSMS UPN47_class_I_Rep_3 4 515.709716796875 2 515.709254 1029.40395 NaN NaN NaN NaN NaN NaN NaN 21.552 1 24.901 24.401 25.401 3.3496 0 0 0 0.11494 1 2431 2431 21.747 3.6117 1 42380 1487 26791 26803 48550 48550 -0.10957167000856316 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS UPN47_class_I_Rep_1 2 522.2296752929688 2 522.230019 1042.44548 -0.15587 -8.1401E-05 -0.11674 -6.0967E-05 -0.27262 -0.00014237 522.2298718091886 27.215 0.86106 30.981 30.645 31.506 3.7662 148 68 3 0 0 0 0.05757 3 4021 3975;4021;4061 45.74 27.223 1 328490 42381 2074 26792 26804 48551;48552;48553 48552 -0.07404031032183411 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS UPN47_class_I_Rep_2 3 522.2297973632812 2 522.230019 1042.44548 -0.363 -0.00018957 0.070613 3.6876E-05 -0.29239 -0.0001527 522.2299542351017 27.389 0.87591 30.887 30.537 31.412 3.4986 147 69 3 0 0 0 0.0047467 3 4098 4059;4098;4136 93.938 63.302 1 385940 42382 2074 26792 26804 48554;48555;48556 48555 -0.07404031032183411 SSDDSKLEY 9 Unmodified _SSDDSKLEY_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS UPN47_class_I_Rep_3 4 522.2297973632812 2 522.230019 1042.44548 -0.33956 -0.00017733 0.028164 1.4708E-05 -0.3114 -0.00016262 522.2299225082971 27.473 0.96273 30.815 30.467 31.43 3.3422 182 81 3 0 0 0 0.014506 3 4165 4129;4165;4204 103.82 73.187 1 325220 42383 2074 26792 26804 48557;48558;48559 48558 -0.07404031032183411 SSDILQNY 8 Unmodified _SSDILQNY_ 0 0 0 L1MD1_dup2868|chr7:45047559-45047924:+|1.0063547828035706|0.0482924511114101|4.38|151.0|27|3|anti-sense L1MD1_dup2868|chr7:45047559-45047924:+|1.0063547828035706|0.0482924511114101|4.38|151.0|27|3|anti-sense L1MD1_dup2868|chr7:45047559-45047924:+|1.0063547828035706|0.0482924511114101|4.38|151.0|27|3|anti-sense MSMS UPN47_class_I_Rep_1 2 470.2241516113281 2 470.224539 938.434526 NaN NaN NaN NaN NaN NaN NaN 61.05 1 64.432 63.932 64.932 3.3815 0 0 0 0.388 1 14288 14288 12.532 0 1 42384 11932 26793 26805 48560 48560 -0.03715388615808024 SSDNATLTHY 10 Unmodified _SSDNATLTHY_ 0 0 0 nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2 nc|ENSG00000108021|Q5VWN6-2|TASOR2 nc|ENSG00000108021|Q5VWN6-2|TASOR2 MSMS UPN47_class_I_Rep_2 3 554.7498168945312 2 554.74891 1107.48327 NaN NaN NaN NaN NaN NaN NaN 28.502 1 32 31.5 32.5 3.4986 0 0 0 0.53105 1 4432 4432 5.2969 1.3525 1 42385 1852 26794 26806 48561 48561 -0.06617520046711434 SSDPAIVHR 9 Unmodified _SSDPAIVHR_ 0 0 0 ENST00000474155.1_1_10:11894076-11908542:+|nuORF ENST00000474155.1_1_10:11894076-11908542:+|nuORF ENST00000474155.1_1_10:11894076-11908542:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 491.2590026855469 2 491.259248 980.503943 0.12573 6.1765E-05 -0.37466 -0.00018406 -0.24893 -0.00012229 491.25899696729545 20.356 0.90181 24.023 23.515 24.417 3.6667 183 91 3 0 0 0 0.42249 2 1681 1681;1785 6.7232 0 1 163100 42386 6946 26795 26807 48562;48563 48562 0.012911151236153273 SSDPDQLVY 9 Unmodified _SSDPDQLVY_ 0 0 0 nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF nc|ENSG00000135424|Q13683-9|ITGA7 nc|ENSG00000135424|Q13683-9|ITGA7 MULTI-MSMS UPN47_class_I_Rep_1 2 512.2349853515625 2 512.235104 1022.45566 0.067325 3.4486E-05 0.047934 2.4554E-05 0.11526 5.904E-05 512.2349958573476 48.79 0.87731 52.472 52.128 53.005 3.6819 154 60 4 0 0 0 0.082592 5 10598 10479;10516;10559;10598;10642 37.974 12.575 1 741360 42387 2907 26796 26808 48564;48565;48566;48567;48568 48567 -0.05467423306959063 SSDPDQLVY 9 Unmodified _SSDPDQLVY_ 0 0 0 nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF nc|ENSG00000135424|Q13683-9|ITGA7 nc|ENSG00000135424|Q13683-9|ITGA7 MULTI-MSMS UPN47_class_I_Rep_2 3 512.2349243164062 2 512.235104 1022.45566 0.066183 3.3901E-05 0.059003 3.0223E-05 0.12519 6.4125E-05 512.2350190227264 49.031 1.1059 52.378 52.057 53.163 3.3465 168 73 4 0 0 0 0.066633 5 10635 10592;10635;10677;10719;10766 41.84 16.44 1 669800 42388 2907 26796 26808 48569;48570;48571;48572;48573 48570 -0.05467423306959063 SSDPDQLVY 9 Unmodified _SSDPDQLVY_ 0 0 0 nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF nc|ENSG00000135424|Q13683-9|ITGA7 nc|ENSG00000135424|Q13683-9|ITGA7 MULTI-MSMS UPN47_class_I_Rep_3 4 512.2351684570312 2 512.235104 1022.45566 0.26473 0.00013561 -0.095504 -4.8921E-05 0.16923 8.6686E-05 512.2349227796645 49.089 0.956 52.324 51.993 52.949 3.2345 144 57 3 0 0 0 0.074399 5 10754 10671;10713;10754;10793;10843 39.95 14.55 1 716460 42389 2907 26796 26808 48574;48575;48576;48577;48578 48576 -0.05467423306959063 SSDPLFTTL 9 Unmodified _SSDPLFTTL_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MULTI-MSMS UPN47_class_I_Rep_2 3 490.75103759765625 2 490.75039 979.486227 -0.10458 -5.1324E-05 0.97454 0.00047825 0.86995 0.00042693 490.7508619381771 24.943 0.80376 28.426 28.119 28.922 3.483 90 70 2 0 0 0 0.35081 1 3446 3446 10.824 0 1 66676 + 42390 17843 26797 26809 48579 48579 -0.004336449219067617 SSDPQAQKY 9 Unmodified _SSDPQAQKY_ 0 0 0 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 MULTI-MSMS UPN47_class_I_Rep_1 2 512.240478515625 2 512.240721 1022.46689 -0.25344 -0.00012982 -0.12732 -6.522E-05 -0.38077 -0.00019504 512.2406153206061 15.461 0.66348 18.958 18.801 19.465 3.4968 148 78 3 0 0 0 0.028995 5 834 794;804;834;867;897 57.722 32.323 1 208480 42391 5190 26798 26810 48580;48581;48582;48583;48584 48582 -0.04344601212812904 SSDPQAQKY 9 Unmodified _SSDPQAQKY_ 0 0 0 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 MULTI-MSMS UPN47_class_I_Rep_2 3 512.2404174804688 2 512.240721 1022.46689 -0.27812 -0.00014247 -0.043426 -2.2244E-05 -0.32155 -0.00016471 512.2406428263399 15.592 0.62807 18.978 18.836 19.464 3.3864 169 71 4 0 0 0 0.0051925 4 862 831;862;892;916 92.653 52.696 1 190160 42392 5190 26798 26810 48585;48586;48587;48588 48586 -0.04344601212812904 SSDPQAQKY 9 Unmodified _SSDPQAQKY_ 0 0 0 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 MULTI-MSMS UPN47_class_I_Rep_3 4 512.2404174804688 2 512.240721 1022.46689 -0.57593 -0.00029501 0.21842 0.00011188 -0.35751 -0.00018313 512.2407523838524 15.611 0.60537 18.977 18.768 19.373 3.3659 140 66 3 0 0 0 0.0094161 3 830 799;830;862 70.332 35.93 1 234750 42393 5190 26798 26810 48589;48590;48591 48590 -0.04344601212812904 SSDPYHSGY 9 Unmodified _SSDPYHSGY_ 0 0 0 nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT MULTI-MSMS UPN47_class_I_Rep_3 4 506.7036437988281 2 506.703971 1011.39339 -0.46047 -0.00023332 -0.017423 -8.8281E-06 -0.47789 -0.00024215 506.70381441097624 24.394 0.8065 27.745 27.405 28.211 3.3509 102 67 2 0 0 0 0.20276 1 3273 3273 20.454 9.6297 1 102310 42394 1290 26799 26811 48592 48592 -0.11185149655273108 SSDPYHSGY 9 Unmodified _SSDPYHSGY_ 0 0 0 nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT MULTI-MATCH UPN47_class_I_Rep_1 2 2 506.703971 1011.39339 -0.25195 -0.00012766 0.12249 6.2064E-05 -0.12946 -6.56E-05 506.7038847461504 24.219 0.68624 27.949 27.574 28.26 3.7298 0.11932 0.00017233 NaN 20.454 81 55 2 NaN NaN NaN NaN 0 NaN NaN 0 89688 42395 1290 26799 26811 -0.11185149655273108 SSDPYHSGY 9 Unmodified _SSDPYHSGY_ 0 0 0 nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT MULTI-MATCH UPN47_class_I_Rep_2 3 2 506.703971 1011.39339 -0.23137 -0.00011724 -0.17183 -8.7068E-05 -0.4032 -0.0002043 506.7037482137459 24.329 0.69457 27.795 27.477 28.171 3.4655 -0.034898 -0.00012593 NaN 20.454 97 61 2 NaN NaN NaN NaN 0 NaN NaN 0 102870 42396 1290 26799 26811 -0.11185149655273108 SSDSPSMAFEL 11 Unmodified _SSDSPSMAFEL_ 0 0 0 L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|10|1|sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|10|1|sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 585.7510986328125 2 585.752804 1169.49105 NaN NaN NaN NaN NaN NaN NaN 18.292 1 21.646 21.146 22.146 3.3545 0 0 0 0.38417 1 1496 1496 1.1933 0.39971 1 42397 14894 26800 26812 48593 48593 -0.08691128841451246 SSDSVGGFRY 10 Unmodified _SSDSVGGFRY_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS UPN47_class_I_Rep_2 3 537.76416015625 2 537.74617 1073.47779 -0.011029 -5.931E-06 0.37332 0.00020075 0.36229 0.00019482 537.746467526386 40.979 0.39359 44.345 44.213 44.607 3.3655 52 37 2 0 0 0 0.4965 1 8188 8188 12.241 3.6474 1 96460 42398 2036 26801 26813 48594 48594 -0.056011988384852884 SSDSVGGFRY 10 Unmodified _SSDSVGGFRY_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 537.74617 1073.47779 -0.017925 -9.6394E-06 0.14478 7.7853E-05 0.12685 6.8214E-05 537.7463286610827 40.731 0.57993 44.403 44.144 44.724 3.6719 0.012358 -0.00010886 NaN 12.241 69 50 2 NaN NaN NaN NaN 0 NaN NaN 0 87943 42399 2036 26801 26813 -0.056011988384852884 SSDSVGGFRY 10 Unmodified _SSDSVGGFRY_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 537.74617 1073.47779 -0.0046789 -2.5161E-06 0.50799 0.00027317 0.50332 0.00027066 537.7464736507567 41.188 0.41916 44.425 44.165 44.585 3.2372 0.033813 0.00028178 NaN 12.241 48 34 2 NaN NaN NaN NaN 0 NaN NaN 0 63990 42400 2036 26801 26813 -0.056011988384852884 SSDVSHQEY 9 Unmodified _SSDVSHQEY_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.2202758789062 2 526.219985 1050.42542 -0.17297 -9.1022E-05 -0.25141 -0.0001323 -0.42439 -0.00022332 526.2196868012679 16.784 0.32364 20.306 20.164 20.488 3.5224 70 37 2 0 0 0 0.47197 1 1156 1156 3.5965 0.70727 1 29720 42401 1765 26802 26814 48595 48595 -0.09777781972138655 SSDVSHQEY 9 Unmodified _SSDVSHQEY_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.219482421875 2 526.219985 1050.42542 -0.17223 -9.0629E-05 0.19333 0.00010173 0.021098 1.1102E-05 526.2198633388108 17.001 0.15207 20.523 20.5 20.652 3.5224 21 17 2 0 0 0 0.45441 1 1195 1195 4.897 1.9018 1 18354 42402 1765 26802 26814 48596 48596 -0.09777781972138655 SSDVSHQEY 9 Unmodified _SSDVSHQEY_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_2 3 526.72216796875 2 526.219985 1050.42542 -0.27973 -0.0001472 -0.16214 -8.5323E-05 -0.44187 -0.00023252 526.2198437184661 17.008 0.48816 20.395 20.261 20.749 3.387 72 53 2 0 0 0 0.47197 2 1200 1200;1211 3.5965 0.93549 1 27740 42403 1765 26802 26814 48597;48598 48597 -0.09777781972138655 SSDVSHQEY 9 Unmodified _SSDVSHQEY_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 526.721923828125 2 526.219985 1050.42542 -0.4711 -0.0002479 0.14945 7.8641E-05 -0.32166 -0.00016926 526.2200135233071 16.993 0.40418 20.351 20.183 20.587 3.3587 82 45 2 0 0 0 0.49187 1 1180 1180 1.4819 0.79152 1 43176 42404 1765 26802 26814 48599 48599 -0.09777781972138655 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS UPN47_class_I_Rep_1 2 531.7460327148438 2 531.74617 1061.47779 -0.11327 -6.0229E-05 0.43123 0.00022931 0.31796 0.00016908 531.7463288221569 24.607 0.64672 28.356 28.115 28.762 3.7495 111 51 3 0 0 0 0.1249 1 3264 3264 29.082 5.061 1 216430 42405 4891 26803 26815 48600 48600 -0.050491988385147124 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS UPN47_class_I_Rep_2 3 531.7456665039062 2 531.74617 1061.47779 -0.11912 -6.3344E-05 0.31001 0.00016485 0.19089 0.0001015 531.7462656086783 24.791 0.84953 28.274 27.973 28.822 3.483 166 74 3 0 0 0 0.0070866 3 3368 3295;3332;3368 71.922 28.064 1 203030 42406 4891 26803 26815 48601;48602;48603 48603 -0.050491988385147124 SSEAHLQQY 9 Unmodified _SSEAHLQQY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS UPN47_class_I_Rep_3 4 531.746337890625 2 531.74617 1061.47779 -0.31225 -0.00016604 0.46774 0.00024872 0.1555 8.2684E-05 531.7463982125076 24.942 0.8587 28.293 27.994 28.853 3.3509 131 66 3 0 0 0 0.1249 3 3416 3377;3416;3452 29.082 9.8246 1 233740 42407 4891 26803 26815 48604;48605;48606 48605 -0.050491988385147124 SSEDSDGEQDC 11 Unmodified _SSEDSDGEQDC_ 0 0 0 nc|ENSG00000072364|Q9UHB7-2|AFF4;ENSG00000072364|ENST00000265343|AFF4 nc|ENSG00000072364|Q9UHB7-2|AFF4 nc|ENSG00000072364|Q9UHB7-2|AFF4 MSMS UPN48_class_I_Rep_3 7 586.3165893554688 2 586.188222 1170.36189 NaN NaN NaN NaN NaN NaN NaN 113.47 1 117.13 116.63 117.63 3.6568 0 0 0 0.38417 1 26981 26981 0 0 1 42408 1100 26804 26816 48607 48607 -0.2164755526218869 SSEELPLYY 9 Unmodified _SSEELPLYY_ 0 0 0 ENSG00000163728|ENST00000296015|TTC14;nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14 ENSG00000163728|ENST00000296015|TTC14 ENSG00000163728|ENST00000296015|TTC14 MULTI-MSMS UPN47_class_I_Rep_2 3 550.7617797851562 2 550.760955 1099.50736 0.367 0.00020213 0.11334 6.2423E-05 0.48033 0.00026455 550.7608889540761 67.043 0.61177 70.306 70.06 70.672 3.2636 69 45 2 0 0 0 0.45688 1 16237 16237 4.756 0.42677 1 93138 42409 4034 26805 26817 48608 48608 -0.038416796130377406 SSEELPLYY 9 Unmodified _SSEELPLYY_ 0 0 0 ENSG00000163728|ENST00000296015|TTC14;nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14 ENSG00000163728|ENST00000296015|TTC14 ENSG00000163728|ENST00000296015|TTC14 MULTI-MSMS UPN47_class_I_Rep_3 4 550.76123046875 2 550.760955 1099.50736 0.43193 0.00023789 0.1929 0.00010624 0.62484 0.00034414 550.7610625785381 67.129 0.62616 70.32 69.992 70.618 3.1914 60 47 2 0 0 0 0.17468 1 16243 16243 23.148 15.238 1 123600 42410 4034 26805 26817 48609 48609 -0.038416796130377406 SSEKNNWK 8 Unmodified _SSEKNNWK_ 0 0 0 L1MCb_dup1514|chr10:20081382-20081644:+|1.0195628739728302|0.0452863492800392|4.49|150.0|6|2|sense L1MCb_dup1514|chr10:20081382-20081644:+|1.0195628739728302|0.0452863492800392|4.49|150.0|6|2|sense L1MCb_dup1514|chr10:20081382-20081644:+|1.0195628739728302|0.0452863492800392|4.49|150.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 496.7433166503906 2 496.743431 991.472308 -0.51304 -0.00025485 0.62102 0.00030849 0.10798 5.3639E-05 496.74369167421673 23.096 0.60073 26.446 26.09 26.691 3.3503 75 48 2 0 0 0 0.82752 1 2845 2845 5.2307 0 1 86010 42411 11847 26806 26818 48610 48610 -0.023768776303313643 SSELFTLTY 9 Unmodified _SSELFTLTY_ 0 0 0 ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3 ENST00000497251.1_1_1:36605278-36614725:-|nuORF ENST00000497251.1_1_1:36605278-36614725:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.763671875 2 530.763497 1059.51244 0.35296 0.00018734 0.21078 0.00011187 0.56374 0.00029921 530.763502972589 75.153 0.90461 78.547 78.144 79.048 3.3937 217 81 4 0 0 0 0.0064938 7 18576 18426;18462;18501;18539;18576;18618;18653 141.83 60.214 1 908040 42412 931 26807 26819 48611;48612;48613;48614;48615;48616;48617 48615 -0.014933757504195455 SSELFTLTY 9 Unmodified _SSELFTLTY_ 0 0 0 ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3 ENST00000497251.1_1_1:36605278-36614725:-|nuORF ENST00000497251.1_1_1:36605278-36614725:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 530.821044921875 2 530.763497 1059.51244 0.35586 0.00018888 -0.38458 -0.00020412 -0.028718 -1.5243E-05 531.2647627644977 75.686 0.060883 79.089 79.058 79.119 3.4034 7 5 2 0 0 0 0.12099 1 18701 18701 6.7232 0 1 24165 42413 931 26807 26819 48618 48618 -0.014933757504195455 SSELFTLTY 9 Unmodified _SSELFTLTY_ 0 0 0 ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3 ENST00000497251.1_1_1:36605278-36614725:-|nuORF ENST00000497251.1_1_1:36605278-36614725:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 530.7638549804688 2 530.763497 1059.51244 0.4016 0.00021315 0.30385 0.00016127 0.70545 0.00037443 530.763547734685 75.346 0.79836 78.592 78.246 79.044 3.2464 196 74 3 0 0 0 0.0067818 6 18636 18600;18636;18673;18711;18750;18789 120.45 54.335 1 684420 42414 931 26807 26819 48619;48620;48621;48622;48623;48624 48620 -0.014933757504195455 SSELFTLTY 9 Unmodified _SSELFTLTY_ 0 0 0 ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3 ENST00000497251.1_1_1:36605278-36614725:-|nuORF ENST00000497251.1_1_1:36605278-36614725:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 530.763497 1059.51244 0.26368 0.00013995 0.37427 0.00019865 0.63794 0.0003386 530.7636002498385 75.294 0.96197 78.607 78.225 79.187 3.3127 0.0249 9.4121E-05 NaN 120.45 223 94 3 NaN NaN NaN NaN 0 NaN NaN 0 944010 42415 931 26807 26819 -0.014933757504195455 SSELRPFLTF 10 Unmodified _SSELRPFLTF_ 0 0 0 REV__chr2:201273200-201276827|46|11.15|0.6|4.21|+|2|TE_info:AluSx,AluSx_dup16618,Alu,SINE,donor,-,201273053,201273200|None,CASP8|2 REV__chr2:201273200-201276827|46|11.15|0.6|4.21|+|2|TE_info:AluSx,AluSx_dup16618,Alu,SINE,donor,-,201273053,201273200|None,CASP8|2 MSMS UPN48_class_I_Rep_1 5 598.820068359375 2 598.819138 1195.62372 NaN NaN NaN NaN NaN NaN NaN 66.293 1 69.745 69.245 70.245 3.4516 0 0 0 0.53105 1 15149 15149 6.6304 0.42459 1 + 42416 17445 26808 26820 48625 48625 0.03373683677500594 SSFFFHVWW 9 Unmodified _SSFFFHVWW_ 0 0 0 REV__HERVIP10FH-int_dup362|chr19:57801628-57802442:-|3.4928990194577048|0.4904219547388916|2.83|151.0|50|3|anti-sense REV__HERVIP10FH-int_dup362|chr19:57801628-57802442:-|3.4928990194577048|0.4904219547388916|2.83|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_2 6 621.7899169921875 2 621.790184 1241.56581 NaN NaN NaN NaN NaN NaN NaN 114.32 1 117.98 117.48 118.48 3.663 0 0 0 0.40038 1 27321 27321 0.6015 0 1 + 42417 23772 26809 26821 48626 48626 -0.04530533457250385 SSFKFKMR 8 Unmodified _SSFKFKMR_ 0 0 0 Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|135|2|anti-sense Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|135|2|anti-sense Tigger1_dup737|chr1:198917518-198919890:+|6.119835331650296|0.030008592543265|7.67|151.0|135|2|anti-sense MSMS UPN46_class_I_Rep_3 1 515.769775390625 2 515.778762 1029.54297 NaN NaN NaN NaN NaN NaN NaN 34.391 1 34.391 33.891 34.891 0 0 0 0 0.40625 1 6134 6134 2.3027 0 1 42418 33178 26810 26822 48627 48627 0.02938124153638455 SSFKPNEVL 9 Unmodified _SSFKPNEVL_ 0 0 0 REV__HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|59|1|sense REV__HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|59|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7720947265625 2 510.771657 1019.52876 0.16687 8.5233E-05 -0.14098 -7.2008E-05 0.025891 1.3225E-05 510.77153325544026 77.767 0.76114 81.11 80.776 81.537 3.3428 193 79 3 0 0 0 0.30034 1 19375 19375 13.906 0 1 578620 + 42419 23610 26811 26823 48628 48628 0.01977750206322071 SSFLHSAYLF 10 Unmodified _SSFLHSAYLF_ 0 0 0 REV__L1M4a2_dup1935|chr19:37959621-37960265:-|1.0141979513287698|0.0044776367904696|7.82|150.0|42|3|anti-sense REV__L1M4a2_dup1935|chr19:37959621-37960265:-|1.0141979513287698|0.0044776367904696|7.82|150.0|42|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.7952880859375 2 586.292756 1170.57096 0.54345 0.00031862 -0.054688 -3.2063E-05 0.48876 0.00028656 586.2926212081462 63.093 0.81623 66.556 66.21 67.027 3.4625 119 57 3 0 0 0 0.51565 2 14110 14110;14286 10.074 0 1 361940 + 42420 24510 26812 26824 48629;48630 48629 -0.007502743853137872 SSFQAKLD 8 Unmodified _SSFQAKLD_ 0 0 0 REV__L1MEc_dup9745|chr9:5157039-5157671:+|1.397612854702026|0.0038895411644489|8.49|151.0|12|2|sense REV__L1MEc_dup9745|chr9:5157039-5157671:+|1.397612854702026|0.0038895411644489|8.49|151.0|12|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 447.8215637207031 2 448.229625 894.444697 0.14608 6.5476E-05 -1.9623 -0.00087956 -1.8162 -0.00081408 448.22933564613567 109.21 0.1843 112.88 112.8 112.99 3.6715 69 23 4 0 0 0 0.72333 1 26000 26000 0.6015 0 1 2950700 + 42421 28498 26813 26825 48631 48631 -0.0067478089058568 SSFQQCSQRSH 11 Unmodified _SSFQQCSQRSH_ 0 0 0 Tigger1_dup10720|chr17:1884844-1885474:-|1.228220699272225|0.2919867601417312|2.07|151.0|27|2|anti-sense Tigger1_dup10720|chr17:1884844-1885474:-|1.228220699272225|0.2919867601417312|2.07|151.0|27|2|anti-sense Tigger1_dup10720|chr17:1884844-1885474:-|1.228220699272225|0.2919867601417312|2.07|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 647.7828369140625 2 647.783293 1293.55203 0.31039 0.00020106 -0.1736 -0.00011246 0.13678 8.8606E-05 647.7832040285803 47.292 0.41069 50.643 50.416 50.826 3.3515 36 24 2 0 0 0 0.66277 1 10154 10154 2.086 0.43339 1 86588 42422 32998 26814 26826 48632 48632 -0.08300179018647214 SSFRPGRGHN 10 Unmodified _SSFRPGRGHN_ 0 0 0 nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MSMS UPN47_class_I_Rep_1 2 557.7800903320312 2 557.778671 1113.54279 NaN NaN NaN NaN NaN NaN NaN 50.775 1 54.404 53.904 54.904 3.6285 0 0 0 0.53105 1 11163 11163 2.9952 0.26005 1 42423 4289 26815 26827 48633 48633 -0.009441595220096133 SSFRQLMY 8 Unmodified _SSFRQLMY_ 0 0 0 REV__L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|133|3|anti-sense REV__L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|133|3|anti-sense MSMS UPN47_class_I_Rep_2 3 515.7747802734375 2 516.252577 1030.4906 NaN NaN NaN NaN NaN NaN NaN 68.423 1 71.693 71.193 72.193 3.2696 0 0 0 0.40581 1 16559 16559 2.8892 0 1 + 42424 26653 26816 26828 48634 48634 -0.02342458979978801 SSFSICVSFIL 11 Unmodified _SSFSICVSFIL_ 0 0 0 L1MC2_dup2873|chr8:47721775-47722502:-|1.0315127346745627|0.0866653544294826|3.57|150.0|56|3|anti-sense L1MC2_dup2873|chr8:47721775-47722502:-|1.0315127346745627|0.0866653544294826|3.57|150.0|56|3|anti-sense L1MC2_dup2873|chr8:47721775-47722502:-|1.0315127346745627|0.0866653544294826|3.57|150.0|56|3|anti-sense MSMS UPN48_class_I_Rep_1 5 601.8096923828125 2 601.809925 1201.6053 NaN NaN NaN NaN NaN NaN NaN 75.126 1 78.616 78.116 79.116 3.49 0 0 0 0.30011 1 17783 17783 12.241 0 1 42425 11246 26817 26829 48635 48635 0.012558057112983079 SSFSNAKIY 9 Unmodified _SSFSNAKIY_ 0 0 0 REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|52|2|anti-sense REV__ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|52|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 508.211669921875 2 508.756007 1015.49746 0.17555 8.9313E-05 -0.4832 -0.00024583 -0.30765 -0.00015652 508.7556262663501 31.748 0.1367 35.45 35.396 35.533 3.7015 19 15 2 0 0 0 0.12408 1 4739 4739 2.9952 0.93549 1 39833 + 42426 23284 26818 26830 48636 48636 -0.009668228277632807 SSFVIPLIEHR 11 Unmodified _SSFVIPLIEHR_ 0 0 0 Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|117|2|anti-sense Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|117|2|anti-sense Tigger1_dup11284|chr18:62731333-62733529:+|2.04292995623392|0.0399353277275317|5.68|151.0|117|2|anti-sense MSMS UPN48_class_I_Rep_2 6 648.8945922851562 2 649.366787 1296.71902 NaN NaN NaN NaN NaN NaN NaN 106.85 1 110.53 110.03 111.03 3.6783 0 0 0 0.38417 1 25252 25252 2.9952 0.93549 1 42427 33011 26819 26831 48637 48637 0.0825303686854113 SSGKLIAEF 9 Unmodified _SSGKLIAEF_ 0 0 0 REV__L1PA4_dup11437|chr20:30407588-30410772:+|1.1425303636285142|0.25143720975845|2.18|147.0|107|1|anti-sense REV__L1PA4_dup11437|chr20:30407588-30410772:+|1.1425303636285142|0.25143720975845|2.18|147.0|107|1|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3262939453125 2 476.260925 950.507297 NaN NaN NaN NaN NaN NaN NaN 32.076 1 32.076 31.576 32.576 0 0 0 0 0.35339 1 5442 5442 7.9102 2.1497 1 + 42428 29602 26820 26832 48638 48638 0.030063651776117695 SSGPFCFAGPL 11 Unmodified _SSGPFCFAGPL_ 0 0 0 REV__ENST00000567351.5_2_17:73997368-73998786:+|nuORF REV__ENST00000567351.5_2_17:73997368-73998786:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 542.2535400390625 2 541.75241 1081.49027 -0.43257 -0.00023435 -0.75442 -0.00040871 -1.187 -0.00064306 541.7519766395277 14.778 0.29599 18.147 18.058 18.354 3.3697 47 36 2 0 0 0 0.67264 1 626 626 1.1933 0.39971 1 22934 + 42429 23070 26821 26833 48639 48639 -0.047218786998428186 SSGVSWTAGII 11 Unmodified _SSGVSWTAGII_ 0 0 0 REV__ENST00000354475.4_1_7:134894368-134894464:-|nuORF REV__ENST00000354475.4_1_7:134894368-134894464:-|nuORF MSMS UPN47_class_I_Rep_3 4 539.283203125 2 539.282389 1076.55022 NaN NaN NaN NaN NaN NaN NaN 67.39 1 70.581 70.081 71.081 3.1914 0 0 0 0.38417 1 16314 16314 2.7352 0.23671 1 + 42430 21859 26822 26834 48640 48640 0.01501135235048423 SSGVWESRL 9 Unmodified _SSGVWESRL_ 0 0 0 HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|341|3|anti-sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|341|3|anti-sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|341|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.75885009765625 2 510.759081 1019.50361 0.23076 0.00011786 -0.3234 -0.00016518 -0.092637 -4.7315E-05 510.7588348579617 50.077 0.59282 53.601 53.143 53.736 3.5246 49 37 2 0 0 0 0.43153 1 10124 10124 6.2058 0 1 110020 42431 8110 26823 26835 48641 48641 -0.005363045962326396 SSGVWESRL 9 Unmodified _SSGVWESRL_ 0 0 0 HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|341|3|anti-sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|341|3|anti-sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|341|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 510.759081 1019.50361 0.27052 0.00013817 -0.28864 -0.00014743 -0.018123 -9.2567E-06 510.7588866077263 49.738 0.63169 53.432 53.124 53.756 3.6946 -0.087283 -2.7586E-05 NaN 6.2058 56 40 2 NaN NaN NaN NaN 0 NaN NaN 0 133870 42432 8110 26823 26835 -0.005363045962326396 SSGYAHWQRL 10 Unmodified _SSGYAHWQRL_ 0 0 0 L1MB3_dup14559|chr17:1042820-1043173:+|1.0745435070546157|0.0433334010653351|4.63|151.0|8|3|sense L1MB3_dup14559|chr17:1042820-1043173:+|1.0745435070546157|0.0433334010653351|4.63|151.0|8|3|sense L1MB3_dup14559|chr17:1042820-1043173:+|1.0745435070546157|0.0433334010653351|4.63|151.0|8|3|sense MSMS UPN47_class_I_Rep_2 3 602.7945556640625 2 602.796529 1203.5785 NaN NaN NaN NaN NaN NaN NaN 70.467 1 73.75 73.25 74.25 3.2828 0 0 0 0.53105 1 17170 17170 3.2813 0.28607 1 42433 10352 26824 26836 48642 48642 -0.0151412206500936 SSHAIIVGFCE 11 Unmodified _SSHAIIVGFCE_ 0 0 0 REV__AluJb_dup115278|chr19:14401849-14402144:+|2.475482454528448|0.0702033020297951|5.14|151.0|12|1|anti-sense REV__AluJb_dup115278|chr19:14401849-14402144:+|2.475482454528448|0.0702033020297951|5.14|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 581.779541015625 2 581.781699 1161.54884 NaN NaN NaN NaN NaN NaN NaN 48.244 1 51.926 51.426 52.426 3.6819 0 0 0 0.38417 1 10390 10390 1.1933 0.39971 1 + 42434 16920 26825 26837 48643 48643 -0.025468221253504453 SSHHYYIDC 9 Unmodified _SSHHYYIDC_ 0 0 0 ENST00000351698.4_1_9:132575664-132575895:-|nuORF ENST00000351698.4_1_9:132575664-132575895:-|nuORF ENST00000351698.4_1_9:132575664-132575895:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 562.7276611328125 2 562.726923 1123.43929 0.37703 0.00021216 0.5542 0.00031186 0.93123 0.00052403 562.7272474144258 72.927 0.4563 76.307 76.03 76.486 3.3799 50 32 2 0 0 0 0.48846 1 17835 17835 1.8442 0.36234 1 96669 42435 6271 26826 26838 48644 48644 -0.1174882774469097 SSHHYYIDC 9 Unmodified _SSHHYYIDC_ 0 0 0 ENST00000351698.4_1_9:132575664-132575895:-|nuORF ENST00000351698.4_1_9:132575664-132575895:-|nuORF ENST00000351698.4_1_9:132575664-132575895:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 562.727294921875 2 562.726923 1123.43929 0.45226 0.0002545 0.36135 0.00020334 0.81361 0.00045784 562.7270931595909 73.122 0.43136 76.349 76.138 76.57 3.2271 55 36 2 0 0 0 0.48846 1 18012 18012 1.8442 0.36234 1 88196 42436 6271 26826 26838 48645 48645 -0.1174882774469097 SSHLKNESCL 10 Unmodified _SSHLKNESCL_ 0 0 0 THE1B-int_dup2440|chr9:26881686-26883198:+|2.02345950025798|0.049180222404382|5.36|151.0|83|3|anti-sense THE1B-int_dup2440|chr9:26881686-26883198:+|2.02345950025798|0.049180222404382|5.36|151.0|83|3|anti-sense THE1B-int_dup2440|chr9:26881686-26883198:+|2.02345950025798|0.049180222404382|5.36|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_1 5 559.2713012695312 2 559.268955 1116.52336 NaN NaN NaN NaN NaN NaN NaN 71.296 1 74.762 74.262 75.262 3.466 0 0 0 0.53105 1 16659 16659 1.3295 0.5359 1 42437 32910 26827 26839 48646 48646 -0.030242966477771915 SSHQSLGFLL 10 Unmodified _SSHQSLGFLL_ 0 0 0 REV__HERVL-int_dup1631|chr10:16447745-16449379:-|1.438085419357792|0.1001877734076038|3.84|151.0|93|2|anti-sense REV__HERVL-int_dup1631|chr10:16447745-16449379:-|1.438085419357792|0.1001877734076038|3.84|151.0|93|2|anti-sense MSMS UPN46_class_I_Rep_3 1 544.7916259765625 2 544.790381 1087.56621 NaN NaN NaN NaN NaN NaN NaN 105.57 1 105.57 105.07 106.07 0 0 0 0 0.53105 1 25753 25753 0.35063 0.043601 1 + 42438 23858 26828 26840 48647 48647 0.025928414719601278 SSHTFMMFL 9 Unmodified _SSHTFMMFL_ 0 0 0 Tigger2_dup265|chr1:243302271-243303790:+|5.750047371149191|0.2223467109161971|4.69|151.0|84|2|anti-sense Tigger2_dup265|chr1:243302271-243303790:+|5.750047371149191|0.2223467109161971|4.69|151.0|84|2|anti-sense Tigger2_dup265|chr1:243302271-243303790:+|5.750047371149191|0.2223467109161971|4.69|151.0|84|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.7487182617188 2 550.748813 1099.48307 NaN NaN NaN NaN NaN NaN NaN 31.392 1 34.927 34.427 35.427 3.5342 0 0 0 0.39428 1 4638 4638 2.0598 0 1 42439 33313 26829 26841 48648 48648 -0.06268934571903628 SSIIHNSLK 9 Unmodified _SSIIHNSLK_ 0 0 0 L1MB4_dup284|chr1:113943085-113943794:-|5.897651737076143|0.0316233071715605|7.54|151.0|3|1|sense;L1MB3_dup13038|chr14:63536241-63537038:+|1.2755473104973067|0.0133183871867501|6.58|150.0|14|2|sense;L1MB8_dup13851|chr16:29088979-29090114:+|1.274458578134544|0.2260760804168756|2.5|151.0|10|1|sense;L1MB7_dup18837|chr16:15080722-15081935:-|1.0996053493960092|0.1711711455672423|2.68|151.0|10|1|sense;L1ME3A_dup3672|chr3:197868485-197868981:+|1.1506041224818089|0.18357928980915|2.65|151.0|1|1|sense L1MB4_dup284|chr1:113943085-113943794:-|5.897651737076143|0.0316233071715605|7.54|151.0|3|1|sense L1MB4_dup284|chr1:113943085-113943794:-|5.897651737076143|0.0316233071715605|7.54|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 499.7841796875 2 499.785099 997.555644 NaN NaN NaN NaN NaN NaN NaN 22.468 1 25.912 25.412 26.412 3.4447 0 0 0 0.39598 1 2673 2673 1.6526 0 1 42440 10337 26830 26842 48649 48649 0.05676858817514585 SSIKKKKYW 9 Unmodified _SSIKKKKYW_ 0 0 0 MER63C_dup179|chr3:171794496-171795037:+|1.0037931111017175|0.0298594655196265|5.07|150.0|9|2|sense MER63C_dup179|chr3:171794496-171795037:+|1.0037931111017175|0.0298594655196265|5.07|150.0|9|2|sense MER63C_dup179|chr3:171794496-171795037:+|1.0037931111017175|0.0298594655196265|5.07|150.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3484497070312 2 584.347866 1166.68118 0.23601 0.00013791 0.1184 6.9188E-05 0.35441 0.0002071 584.3479147875621 28.767 0.24433 28.767 28.57 28.814 0 26 17 2 0 0 0 0.50088 1 4433 4433 0.52476 0 1 334790 42441 16167 26831 26843 48650 48650 0.10450570673765469 SSILKAYPL 9 Unmodified _SSILKAYPL_ 0 0 0 L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|72|2|sense L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|72|2|sense L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|72|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2954406738281 2 496.294768 990.574983 0.081008 4.0204E-05 1.595 0.00079161 1.6761 0.00083182 496.29550060199864 31.596 0.10587 31.596 31.526 31.632 0 15 6 3 0 0 0 0.49026 1 5296 5296 1.6526 1.6526 1 839900 42442 14851 26832 26844 48651 48651 0.0793181510841805 SSILLVSTLY 10 Unmodified _SSILLVSTLY_ 0 0 0 L1MD_dup2846|chr5:138942428-138942745:-|1.172731124837228|0.4312270091541057|1.44|151.0|19|1|anti-sense L1MD_dup2846|chr5:138942428-138942745:-|1.172731124837228|0.4312270091541057|1.44|151.0|19|1|anti-sense L1MD_dup2846|chr5:138942428-138942745:-|1.172731124837228|0.4312270091541057|1.44|151.0|19|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.8350219726562 2 548.31844 1094.62233 0.45695 0.00025055 0.40189 0.00022036 0.85884 0.00047092 548.3181302358652 108.69 0.17976 112.33 112.28 112.46 3.6321 30 18 3 0 0 0 0.51565 1 26319 26319 10.074 2.7847 1 24045000 42443 11875 26833 26845 48652 48652 0.07880049588766269 SSIRVAIAL 9 Unmodified _SSIRVAIAL_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MSMS UPN48_class_I_Rep_2 6 465.29254150390625 2 465.292559 928.570566 NaN NaN NaN NaN NaN NaN NaN 63.903 1 67.377 66.877 67.877 3.4743 0 0 0 0.2408 1 14404 14404 13.906 0 1 42444 4161 26834 26846 48653 48653 0.10342350685493784 SSIRVAIAL 9 Unmodified _SSIRVAIAL_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS UPN48_class_I_Rep_3 7 465.29217529296875 2 465.292559 928.570566 0.21466 9.9878E-05 -0.34123 -0.00015877 -0.12657 -5.8893E-05 465.29236102736814 63.638 0.080311 67.147 67.11 67.191 3.5091 10 6 2 0 0 0 0.21527 1 14246 14246 19.257 0 1 139340 42445 4161 26834 26846 48654 48654 0.10342350685493784 SSIRVAIAL 9 Unmodified _SSIRVAIAL_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MATCH UPN48_class_I_Rep_1 5 2 465.292559 928.570566 0.18465 8.5918E-05 -0.56172 -0.00026136 -0.37706 -0.00017545 465.29221809036346 63.886 0.10019 67.343 67.301 67.401 3.4578 0.12924 4.3434E-05 NaN 19.257 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 93834 42446 4161 26834 26846 0.10342350685493784 SSISFISVSYF 11 Unmodified _SSISFISVSYF_ 0 0 0 L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|252|3|anti-sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|252|3|anti-sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|252|3|anti-sense MSMS UPN48_class_I_Rep_1 5 618.8103637695312 2 618.810979 1235.6074 NaN NaN NaN NaN NaN NaN NaN 55.513 1 59.021 58.521 59.521 3.5082 0 0 0 0.38417 1 11857 11857 2.7352 0 1 42447 9357 26835 26847 48655 48655 -0.0009744227925239102 SSISVGVLW 9 Unmodified _SSISVGVLW_ 0 0 0 REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|54|1|sense REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|54|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 474.2822265625 2 474.263468 946.512382 0.23288 0.00011045 -0.38816 -0.00018409 -0.15527 -7.3641E-05 474.26297687929923 109.27 0.13803 112.88 112.82 112.95 3.6046 28 16 2 0 0 0 0.12235 1 26930 26930 4.756 0.42677 1 960820 + 42448 30168 26836 26848 48656 48656 0.03698669040238656 SSITASLRF 9 Unmodified _SSITASLRF_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000178462|A6NHL2-2|TUBAL3;ENSG00000178462|ENST00000380419|TUBAL3;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_1 5 491.27197265625 2 491.271824 980.529095 0.18899 9.2847E-05 0.33482 0.00016449 0.52382 0.00025734 491.27198790362604 53.819 0.7872 57.333 57.065 57.852 3.5143 123 56 3 0 0 0 0.0058741 1 11389 11389 76.825 22.992 1 565790 42449 2425;4314;7292;6699 26837 26849 48657 48657 0.03805169926192775 SSITASLRF 9 Unmodified _SSITASLRF_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000178462|A6NHL2-2|TUBAL3;ENSG00000178462|ENST00000380419|TUBAL3;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN48_class_I_Rep_2 6 491.271728515625 2 491.271824 980.529095 0.34662 0.00017028 0.14667 7.2056E-05 0.49329 0.00024234 491.27186442476386 53.78 0.77502 57.39 57.078 57.853 3.6098 121 53 3 0 0 0 0.0050147 1 11328 11328 93.166 41.536 1 426350 42450 2425;4314;7292;6699 26837 26849 48658 48658 0.03805169926192775 SSITASLRF 9 Unmodified _SSITASLRF_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;nc|ENSG00000178462|A6NHL2-2|TUBAL3;ENSG00000178462|ENST00000380419|TUBAL3;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENSG00000123416|ENST00000336023|TUBA1B MULTI-SECPEP UPN48_class_I_Rep_3 7 491.7958984375 2 491.271824 980.529095 0.093801 4.6082E-05 0.41686 0.00020479 0.51066 0.00025087 491.27198783069986 53.782 0.79972 57.366 57.076 57.876 3.5836 125 55 3 0 0 0 2.6445E-05 1 11255 11255 93.166 33.092 1 454700 42451 2425;4314;7292;6699 26837 26849 48659 48659 0.03805169926192775 SSKEMWHSLQE 11 Unmodified _SSKEMWHSLQE_ 0 0 0 nc|ENSG00000165643|Q5JUK2|SOHLH1;ENSG00000165643|ENST00000425225|SOHLH1 nc|ENSG00000165643|Q5JUK2|SOHLH1 nc|ENSG00000165643|Q5JUK2|SOHLH1 MSMS UPN46_class_I_Rep_3 1 454.5450439453125 3 454.543326 1360.60815 NaN NaN NaN NaN NaN NaN NaN 69.328 1 69.328 68.828 69.828 0 0 0 0 0.38417 1 15881 15881 0.40827 0.24894 1 42452 4192 26838 26850 48660 48660 -0.057729709018303765 SSKKKRRKK 9 Unmodified _SSKKKRRKK_ 0 0 0 REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF MSMS UPN46_class_I_Rep_3 1 573.3826293945312 2 573.383106 1144.75166 NaN NaN NaN NaN NaN NaN NaN 106.08 1 106.08 105.58 106.58 0 0 0 0 0.4029 1 25872 25872 0 0 1 + 42453 18179 26839 26851 48661 48661 0.18507288782052456 SSKNLKQNY 9 Unmodified _SSKNLKQNY_ 0 0 0 L1PREC2_dup243|chr1:113935024-113935819:-|2.72156896609232|0.0059327081950243|8.84|151.0|24|3|sense L1PREC2_dup243|chr1:113935024-113935819:-|2.72156896609232|0.0059327081950243|8.84|151.0|24|3|sense L1PREC2_dup243|chr1:113935024-113935819:-|2.72156896609232|0.0059327081950243|8.84|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 541.28564453125 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 28.751 1 28.751 28.251 29.251 0 0 0 0 0.38639 1 4459 4459 3.9444 0 1 42454 15438 26840 26852 48662 48662 0.019316534665676954 SSKPRLIYY 9 Unmodified _SSKPRLIYY_ 0 0 0 Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|21|2|sense Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|21|2|sense Tigger3b_dup5633|chr16:58124383-58125402:-|1.497060165921317|0.0561871298497018|4.74|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 563.81591796875 2 563.816399 1125.61824 0.61225 0.0003452 0.30943 0.00017446 0.92168 0.00051966 563.8166704488194 55.797 1.3333 59.353 58.786 60.119 3.5559 279 95 4 0 0 0 0.21527 2 12067 12067;12072 19.257 0 1 3616200 42455 33400 26841 26853 48663;48664 48663 0.060460048857066795 SSKRLAHA 8 Unmodified _SSKRLAHA_ 0 0 0 REV__L1M2b_dup171|chr12:46603315-46605295:+|2.060882634029404|0.0743722300847884|4.79|151.0|23|2|sense REV__L1M2b_dup171|chr12:46603315-46605295:+|2.060882634029404|0.0743722300847884|4.79|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.25103759765625 2 435.251226 868.487899 -0.011424 -4.9724E-06 -0.6377 -0.00027756 -0.64913 -0.00028253 435.25083879887944 67.953 0.80317 71.317 70.91 71.713 3.3646 87 60 2 0 0 0 0.82752 1 16389 16389 0.79363 0 1 81444 + 42456 24272 26842 26854 48665 48665 0.048394536773685104 SSKSGKKKTR 10 Unmodified _SSKSGKKKTR_ 0 0 0 HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|40|2|sense HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|40|2|sense HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|40|2|sense MSMS UPN46_class_I_Rep_3 1 553.8350830078125 2 553.835654 1105.65676 NaN NaN NaN NaN NaN NaN NaN 23.008 1 23.008 22.508 23.508 0 0 0 0 0.53105 1 2818 2818 0 0 1 42457 8230 26843 26855 48666 48666 0.10815310520206367 SSKTRTDNSEC 11 Unmodified _SSKTRTDNSEC_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MULTI-MSMS UPN47_class_I_Rep_1 2 614.2675170898438 2 614.267141 1226.51973 0.43132 0.00026494 0.77723 0.00047742 1.2085 0.00074237 614.2678483921959 58.547 0.50123 61.964 61.633 62.134 3.4171 52 33 2 0 0 0 0.61292 2 13505 13505;13548 4.897 1.6157 1 82848 42458 1420 26844 26856 48667;48668 48667 -0.08447011212297184 SSKWLPIL 8 Unmodified _SSKWLPIL_ 0 0 0 REV__L1MB7_dup20970|chr19:338201-339583:+|1.1245222748245978|0.4787083863683782|1.23|150.0|55|1|anti-sense REV__L1MB7_dup20970|chr19:338201-339583:+|1.1245222748245978|0.4787083863683782|1.23|150.0|55|1|anti-sense MSMS UPN47_class_I_Rep_2 3 472.282470703125 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 93.773 1 97.242 96.742 97.742 3.4687 0 0 0 0.40738 1 23132 23132 0.79363 0 1 + 42459 26207 26845 26857 48669 48669 0.08027849799555042 SSLFGLLHP 9 Unmodified _SSLFGLLHP_ 0 0 0 REV__ENST00000282120.6_1_2:85547375-85547630:-|nuORF REV__ENST00000282120.6_1_2:85547375-85547630:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.2851867675781 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 33.574 1 37.235 36.735 37.735 3.6607 0 0 0 0.39428 1 5315 5315 2.0598 0 1 + 42460 21626 26846 26858 48670 48670 0.04238375277122941 SSLFTLAQI 9 Unmodified _SSLFTLAQI_ 0 0 0 REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11 REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11 MULTI-MSMS UPN47_class_I_Rep_1 2 490.27630615234375 2 490.276575 978.538597 0.12108 5.9361E-05 0.33928 0.00016634 0.46035 0.0002257 490.27645338350305 69.898 0.32706 73.266 73.13 73.457 3.3678 53 30 2 0 0 0 0.30034 1 16934 16934 13.906 0 1 86617 + 42461 17693 26847 26859 48671 48671 0.04846938211710494 SSLFTLAQI 9 Unmodified _SSLFTLAQI_ 0 0 0 REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11 REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11 MULTI-MSMS UPN47_class_I_Rep_3 4 490.2770690917969 2 490.276575 978.538597 0.19669 9.6433E-05 0.27973 0.00013714 0.47642 0.00023358 490.2764492626702 70.11 0.53617 73.321 72.973 73.509 3.2113 65 42 2 0 0 0 0.23293 1 17081 17081 18.146 0 1 102630 + 42462 17693 26847 26859 48672 48672 0.04846938211710494 SSLHAGGHRAL 11 Unmodified _SSLHAGGHRAL_ 0 0 0 REV__AluJb_dup29627|chr4:39734516-39734818:+|1.385290244742229|0.0262679970182656|5.72|151.0|3|1|sense REV__AluJb_dup29627|chr4:39734516-39734818:+|1.385290244742229|0.0262679970182656|5.72|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 553.2973022460938 2 553.296696 1104.57884 NaN NaN NaN NaN NaN NaN NaN 14.343 1 14.343 13.843 14.843 0 0 0 0 0.38417 1 610 610 1.1933 0.12188 1 + 42463 16937 26848 26860 48673 48673 0.030732976548506485 SSLHNHGF 8 Unmodified _SSLHNHGF_ 0 0 0 REV__MSTA-int_dup984|chr5:71096963-71098431:+|1.598803340793869|0.3013525666756532|2.41|151.0|60|1|anti-sense REV__MSTA-int_dup984|chr5:71096963-71098431:+|1.598803340793869|0.3013525666756532|2.41|151.0|60|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 450.29913330078125 2 449.711934 897.409314 -0.36671 -0.00016491 -0.34529 -0.00015528 -0.712 -0.00032019 449.711629140643 35.416 0.58693 39.092 38.87 39.457 3.6762 45 40 2 0 0 0 0.72333 1 6494 6494 7.2892 0 1 61921 + 42464 31884 26849 26861 48674 48674 -0.043493986277098884 SSLHSSTGKR 10 Unmodified _SSLHSSTGKR_ 0 0 0 REV__ENST00000476848.5_1_21:43792838-43795846:-|nuORF REV__ENST00000476848.5_1_21:43792838-43795846:-|nuORF MSMS UPN48_class_I_Rep_3 7 530.2809448242188 2 530.280712 1058.54687 NaN NaN NaN NaN NaN NaN NaN 112.56 1 116.22 115.72 116.72 3.6614 0 0 0 0.53105 1 26746 26746 1.4819 0.15237 1 + 42465 22543 26850 26862 48675 48675 0.01993885181036603 SSLLCMLLF 9 Unmodified _SSLLCMLLF_ 0 0 0 Tigger1_dup10103|chr14:68029301-68031056:-|1.177956139830712|0.0175687625160618|6.07|149.0|86|2|anti-sense Tigger1_dup10103|chr14:68029301-68031056:-|1.177956139830712|0.0175687625160618|6.07|149.0|86|2|anti-sense Tigger1_dup10103|chr14:68029301-68031056:-|1.177956139830712|0.0175687625160618|6.07|149.0|86|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.7722778320312 2 513.771757 1025.52896 -0.14922 -7.6664E-05 1.3315 0.0006841 1.1823 0.00060743 513.7722919018007 40.799 0.06226 44.471 44.431 44.493 3.6719 6 5 2 0 0 0 0.46434 1 8131 8131 4.3292 0 1 41600 42466 32973 26851 26863 48676 48676 0.017217106103316837 SSLLPQRQ 8 Unmodified _SSLLPQRQ_ 0 0 0 REV__ENST00000361534.6_1_21:35013512-35014031:-|nuORF REV__ENST00000361534.6_1_21:35013512-35014031:-|nuORF MSMS UPN46_class_I_Rep_3 1 464.76409912109375 2 464.764166 927.513779 NaN NaN NaN NaN NaN NaN NaN 38.134 1 38.134 37.634 38.634 0 0 0 0 0.40625 1 7236 7236 2.3027 0 1 + 42467 21903 26852 26864 48677 48677 0.04712303128997064 SSLLVIVNF 9 Unmodified _SSLLVIVNF_ 0 0 0 L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|82|1|anti-sense L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|82|1|anti-sense L1PREC2_dup1517|chr3:152434049-152436046:-|3.392563017830447|0.1186399809024675|4.84|151.0|82|1|anti-sense MSMS UPN46_class_I_Rep_3 1 496.2950134277344 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 29.688 1 29.688 29.188 30.188 0 0 0 0 0.39518 1 4736 4736 1.8442 0 1 42468 15416 26853 26865 48678 48678 0.07931815108429419 SSLLWWLG 8 Unmodified _SSLLWWLG_ 0 0 0 ENST00000524630.5_1_11:57520988-57558858:+|nuORF;ENST00000528395.1_1_11:57480275-57558858:+|nuORF;ENST00000529919.5_1_11:57520766-57558858:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF ENST00000524630.5_1_11:57520988-57558858:+|nuORF ENST00000524630.5_1_11:57520988-57558858:+|nuORF MSMS UPN47_class_I_Rep_1 2 481.2625732421875 2 481.260728 960.506903 NaN NaN NaN NaN NaN NaN NaN 50.11 1 53.739 53.239 54.239 3.6285 0 0 0 0.40738 1 10960 10960 0.79363 0 1 42469 6299 26854 26866 48679 48679 0.02506990248434704 SSLLWWLG 8 Unmodified _SSLLWWLG_ 0 0 0 ENST00000524630.5_1_11:57520988-57558858:+|nuORF;ENST00000528395.1_1_11:57480275-57558858:+|nuORF;ENST00000529919.5_1_11:57520766-57558858:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF ENST00000524630.5_1_11:57520988-57558858:+|nuORF ENST00000524630.5_1_11:57520988-57558858:+|nuORF MSMS UPN47_class_I_Rep_2 3 481.261962890625 2 481.260728 960.506903 NaN NaN NaN NaN NaN NaN NaN 50.473 1 53.816 53.316 54.316 3.3431 0 0 0 0.40581 1 11097 11097 2.8892 0 1 42470 6299 26854 26866 48680 48680 0.02506990248434704 SSLMARETWEV 11 Unmodified _SSLMARETWEV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MSMS UPN47_class_I_Rep_1 2 436.87884521484375 3 436.879939 1307.61799 0.099501 4.347E-05 -0.70174 -0.00030658 -0.60224 -0.00026311 436.87909957490933 85.657 0.18448 89.248 89.202 89.387 3.5914 31 23 2 0 0 0 0.68081 1 21414 21414 0.45452 0 1 49809 42471 4473 26855 26867 48681 48681 -0.02351782896471377 SSLMARETWEV 11 Unmodified _SSLMARETWEV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 436.879939 1307.61799 0.099501 4.347E-05 -0.70174 -0.00030658 -0.60224 -0.00026311 436.87909957490933 85.657 0.18448 89.248 89.202 89.387 3.5914 -0.040982 -0.00046446 NaN 0.45452 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 49809 42472 4473 26855 26867 -0.02351782896471377 SSLMARETWEV 11 Unmodified _SSLMARETWEV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.879939 1307.61799 -0.22766 -9.9458E-05 -0.0036956 -1.6146E-06 -0.23135 -0.00010107 436.87914812995473 86.076 0.23045 89.509 89.319 89.55 3.4329 0.21981 0.00045042 NaN 0.45452 35 30 2 NaN NaN NaN NaN 0 NaN NaN 0 45523 42473 4473 26855 26867 -0.02351782896471377 SSLMARETWEV 11 Unmodified _SSLMARETWEV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MATCH UPN48_class_I_Rep_1 5 3 436.879939 1307.61799 -0.033956 -1.4835E-05 -0.28747 -0.00012559 -0.32143 -0.00014043 436.8792514917079 85.653 0.17104 89.259 89.147 89.318 3.6059 -0.030655 7.8491E-05 NaN 0.45452 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 52354 42474 4473 26855 26867 -0.02351782896471377 SSLMARETWEV 11 Unmodified _SSLMARETWEV_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.879939 1307.61799 0.10692 4.6713E-05 -0.1034 -4.5172E-05 0.0035281 1.5413E-06 436.87921144741694 85.435 0.17569 89.141 89.007 89.182 3.7058 -0.14817 0.00031975 NaN 0.45452 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 56847 42475 4473 26855 26867 -0.02351782896471377 SSLNGTSLWEF 11 Unmodified _SSLNGTSLWEF_ 0 0 0 L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|60|2|sense L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|60|2|sense L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|60|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 620.7958374023438 2 620.79586 1239.57717 0.44624 0.00027702 -0.19935 -0.00012376 0.24689 0.00015327 620.7956501507325 77.143 0.65511 80.558 80.316 80.971 3.4149 123 57 3 0 0 0 0.32916 2 19105 19105;19245 26.268 0 1 258930 42476 13598 26856 26868 48682;48683 48682 -0.03303800944422619 SSLPFDPRLS 10 Unmodified _SSLPFDPRLS_ 0 0 0 HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|48|2|anti-sense HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|48|2|anti-sense HAL1_dup14269|chr10:7854918-7855801:+|1.0026833032971705|0.0138470915329653|6.18|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.79638671875 2 559.795663 1117.57677 NaN NaN NaN NaN NaN NaN NaN 37.43 1 41.132 40.632 41.632 3.7021 0 0 0 0.53105 1 6405 6405 1.3295 0 1 42477 7802 26857 26869 48684 48684 0.022688241263722375 SSLPPEGLL 9 Unmodified _SSLPPEGLL_ 0 0 0 REV__L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|343|3|anti-sense REV__L1PA5_dup9031|chr12:107722741-107728264:+|1.5131866949306358|0.4061894564206277|1.9|151.0|343|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.75543212890625 2 456.755475 911.496398 -0.17634 -8.0544E-05 0.71469 0.00032644 0.53835 0.0002459 456.75556867742745 65.627 0.71196 68.807 68.602 69.314 3.1795 96 43 3 0 0 0 0.41259 1 15732 15732 7.2892 0 1 192880 + 42478 29814 26858 26870 48685 48685 0.03710962803347684 SSLSPLLVGV 10 Unmodified _SSLSPLLVGV_ 0 0 0 REV__ENST00000330651.10_1_22:50702225-50702900:-|nuORF REV__ENST00000330651.10_1_22:50702225-50702900:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.2920227050781 2 486.292225 970.569897 0.087086 4.2349E-05 0.19017 9.2476E-05 0.27725 0.00013483 486.29220730518375 54.431 0.88888 57.932 57.51 58.398 3.5014 99 47 3 0 0 0 0.51565 1 12192 12192 10.074 0 1 311170 + 42479 21776 26859 26871 48686 48686 0.08343511245823265 SSLSPMSDII 10 Unmodified _SSLSPMSDII_ 0 0 0 REV__L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|49|1|sense REV__L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|49|1|sense MSMS UPN48_class_I_Rep_1 5 525.26220703125 2 525.262807 1048.51106 NaN NaN NaN NaN NaN NaN NaN 76.086 1 79.585 79.085 80.085 3.4996 0 0 0 0.53105 1 18061 18061 5.7319 0.97584 1 + 42480 29782 26860 26872 48687 48687 -0.01125333110826432 SSLSREKKK 9 Unmodified _SSLSREKKK_ 0 0 0 REV__nc|ENSG00000129071|O95243-3|MBD4 REV__nc|ENSG00000129071|O95243-3|MBD4 MULTI-MSMS UPN47_class_I_Rep_3 4 531.81640625 2 531.81693 1061.61931 0.41871 0.00022267 0.079936 4.2512E-05 0.49864 0.00026519 531.8169160485473 79.563 0.9968 82.858 82.542 83.539 3.295 174 106 2 0 0 0 0.48846 1 20051 20051 1.8442 1.8442 1 191370 + 42481 18916 26861 26873 48688 48688 0.0909621925461579 SSLYQLRRYC 10 Unmodified _SSLYQLRRYC_ 0 0 0 REV__nc|ENSG00000116337|Q01433-5|AMPD2 REV__nc|ENSG00000116337|Q01433-5|AMPD2 MULTI-MSMS UPN48_class_I_Rep_1 5 644.82763671875 2 644.826972 1287.63939 0.44036 0.00028396 0.036868 2.3774E-05 0.47723 0.00030773 644.8270791577531 50.102 0.53893 53.626 53.379 53.918 3.5246 58 33 2 0 0 0 0.52562 2 10231 10183;10231 8.7454 3.4485 1 187190 + 42482 18602 26862 26874 48689;48690 48690 0.0070764692293323606 SSLYQLRRYC 10 Unmodified _SSLYQLRRYC_ 0 0 0 REV__nc|ENSG00000116337|Q01433-5|AMPD2 REV__nc|ENSG00000116337|Q01433-5|AMPD2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 644.826972 1287.63939 0.45781 0.00029521 -0.047383 -3.0554E-05 0.41043 0.00026465 644.8268582462288 49.952 0.64926 53.646 53.272 53.921 3.6946 0.0043766 -3.574E-06 NaN 8.7454 69 41 2 NaN NaN NaN NaN 0 NaN NaN 0 208370 + 42483 18602 26862 26874 0.0070764692293323606 SSNFNFGCHS 10 Unmodified _SSNFNFGCHS_ 0 0 0 REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.217529296875 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 113.89 1 117.46 116.96 117.96 3.572 0 0 0 0.53105 1 28124 28124 1.4819 0 1 + 42484 24661 26863 26875 48691 48691 -0.12637998404511563 SSNFNFGCHS 10 Unmodified _SSNFNFGCHS_ 0 0 0 REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2169799804688 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 118.1 1 121.71 121.21 122.21 3.6036 0 0 0 0.53105 1 29298 29298 1.4819 0 1 + 42485 24661 26863 26875 48692 48692 -0.12637998404511563 SSNFNFGCHS 10 Unmodified _SSNFNFGCHS_ 0 0 0 REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2177734375 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 23.483 1 27.048 26.548 27.548 3.5655 0 0 0 0.53105 1 2457 2457 1.4819 0 1 + 42486 24661 26863 26875 48693 48693 -0.12637998404511563 SSNFNFGCHS 10 Unmodified _SSNFNFGCHS_ 0 0 0 REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense REV__L1M5_dup34053|chr10:26762808-26763077:-|2.257857623361112|0.273342669256797|3.05|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2177124023438 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 117.7 1 121.32 120.82 121.82 3.6215 0 0 0 0.53105 1 28687 28687 1.4819 0 1 + 42487 24661 26863 26875 48694 48694 -0.12637998404511563 SSNIIVPRS 9 Unmodified _SSNIIVPRS_ 0 0 0 REV__ENST00000431705.1_1_3:48885788-48886603:+|nuORF REV__ENST00000431705.1_1_3:48885788-48886603:+|nuORF MSMS UPN46_class_I_Rep_3 1 486.7782897949219 2 486.777274 971.539994 NaN NaN NaN NaN NaN NaN NaN 35.467 1 35.467 34.967 35.967 0 0 0 0 0.3824 1 6461 6461 4.897 0.56777 1 + 42488 22294 26864 26876 48695 48695 0.05308572300475589 SSNLLVHQR 9 Unmodified _SSNLLVHQR_ 0 0 0 nc|ENSG00000278318|Q9UJW7-2|ZNF229;ENSG00000278318|ENST00000614049|ZNF229;nc|ENSG00000267508|Q96NJ3-2|ZNF285;ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENSG00000267508|ENST00000614994|ZNF285 nc|ENSG00000278318|Q9UJW7-2|ZNF229 nc|ENSG00000278318|Q9UJW7-2|ZNF229 MULTI-MSMS UPN46_class_I_Rep_3 1 527.2939453125 2 527.293622 1052.57269 -0.056448 -2.9764E-05 -0.31497 -0.00016608 -0.37142 -0.00019585 527.2933690777021 24.165 0.57642 24.165 23.901 24.477 0 105 58 2 0 0 0 0.26468 3 3113 3079;3113;3165 16.149 0 1 71590 42489 5838 26865 26877 48696;48697;48698 48697 0.04850779423327367 SSNSLPTNR 9 Unmodified _SSNSLPTNR_ 0 0 0 L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|25|1|sense L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|25|1|sense L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|25|1|sense MSMS UPN46_class_I_Rep_3 1 488.2434387207031 2 488.246338 974.478122 NaN NaN NaN NaN NaN NaN NaN 17.831 1 17.831 17.331 18.331 0 0 0 0 0.39036 1 1466 1466 2.9952 0 1 42490 10111 26866 26878 48699 48699 -0.010137791186593859 SSPLQSLVF 9 Unmodified _SSPLQSLVF_ 0 0 0 L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.26861572265625 2 489.26875 976.522947 0.159 7.7792E-05 -0.17461 -8.5431E-05 -0.015612 -7.6383E-06 489.2685868412543 76.562 0.64623 79.977 79.651 80.297 3.4149 97 61 2 0 0 0 0.097406 2 18968 18929;18968 34.402 0 1 130720 42491 11714 26867 26879 48700;48701 48701 0.03374651694673503 SSPLQSLVF 9 Unmodified _SSPLQSLVF_ 0 0 0 L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 489.2689514160156 2 489.26875 976.522947 0.30241 0.00014796 -0.16447 -8.0471E-05 0.13793 6.7486E-05 489.2685991502992 76.747 0.57335 80.079 79.81 80.383 3.3315 92 59 2 0 0 0 0.26468 1 19029 19029 16.149 0 1 99385 42492 11714 26867 26879 48702 48702 0.03374651694673503 SSPLQSLVF 9 Unmodified _SSPLQSLVF_ 0 0 0 L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|93|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 489.2685546875 2 489.26875 976.522947 0.20198 9.8825E-05 -0.16346 -7.9974E-05 0.038528 1.885E-05 489.2686212626811 76.701 0.72128 79.97 79.651 80.372 3.269 113 79 2 0 0 0 0.30034 1 19101 19101 13.906 0 1 120490 42493 11714 26867 26879 48703 48703 0.03374651694673503 SSPLSLWSF 9 Unmodified _SSPLSLWSF_ 0 0 0 REV__AluSx_dup107834|chr19:41335995-41336296:-|1.0912355328578565|0.0684449921785236|3.99|151.0|16|2|anti-sense REV__AluSx_dup107834|chr19:41335995-41336296:-|1.0912355328578565|0.0684449921785236|3.99|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_3 7 512.2628173828125 2 512.260925 1022.5073 NaN NaN NaN NaN NaN NaN NaN 75.886 1 79.469 78.969 79.969 3.5831 0 0 0 0.36505 1 17851 17851 7.2892 0 1 + 42494 17132 26868 26880 48704 48704 -0.0030563482237084827 SSPMPTRPK 9 Unmodified _SSPMPTRPK_ 0 0 0 REV__ENSG00000072864|ENST00000396354|NDE1 REV__ENSG00000072864|ENST00000396354|NDE1 MSMS UPN47_class_I_Rep_3 4 500.76513671875 2 500.765852 999.51715 NaN NaN NaN NaN NaN NaN NaN 115.08 1 118.56 118.06 119.06 3.4802 0 0 0 0.3967 1 28285 28285 1.4819 0.68827 1 + 42495 17836 26869 26881 48705 48705 0.017372299113503686 SSQPLKGPYY 10 Unmodified _SSQPLKGPYY_ 0 0 0 REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|17|1|sense REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.2904052734375 2 570.290214 1138.56587 0.36239 0.00020667 -0.031376 -1.7893E-05 0.33102 0.00018878 570.2902372045153 73.53 1.6121 76.916 76.181 77.793 3.3861 453 138 5 0 0 0 0.40227 1 17994 17994 19.257 0 1 5725200 + 42496 29644 26870 26882 48706 48706 0.0021342175209611014 SSQPLKGPYY 10 Unmodified _SSQPLKGPYY_ 0 0 0 REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|17|1|sense REV__L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2904663085938 2 570.290214 1138.56587 0.45497 0.00025946 -0.10223 -5.8301E-05 0.35274 0.00020116 570.290195687736 73.73 1.9345 76.966 76.174 78.108 3.2363 524 192 5 0 0 0 0.40227 1 18172 18172 19.257 0 1 5554300 + 42497 29644 26870 26882 48707 48707 0.0021342175209611014 SSQPLTTTNLL 11 Unmodified _SSQPLTTTNLL_ 0 0 0 L1MB7_dup21963|chr20:44988669-44990406:-|1.5538995887128544|0.0584197021466269|4.73|151.0|67|1|anti-sense L1MB7_dup21963|chr20:44988669-44990406:-|1.5538995887128544|0.0584197021466269|4.73|151.0|67|1|anti-sense L1MB7_dup21963|chr20:44988669-44990406:-|1.5538995887128544|0.0584197021466269|4.73|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_1 2 587.8181762695312 2 587.819335 1173.62412 NaN NaN NaN NaN NaN NaN NaN 53.957 1 57.485 56.985 57.985 3.5278 0 0 0 0.38417 1 12132 12132 0.96228 0 1 42498 10803 26871 26883 48708 48708 0.0442505860669371 SSQQFSGIGR 10 Unmodified _SSQQFSGIGR_ 0 0 0 nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF nc|ENSG00000100201|Q92841-1|DDX17 nc|ENSG00000100201|Q92841-1|DDX17 MULTI-MSMS UPN46_class_I_Rep_3 1 533.7677612304688 2 533.767437 1065.52032 0.14857 7.9302E-05 0.01758 9.3839E-06 0.16615 8.8686E-05 533.7673896746422 33.131 0.61271 33.131 32.901 33.513 0 99 47 3 0 0 0 2.194E-06 3 5752 5712;5752;5790 111.31 53.587 1 269170 42499 1481 26872 26884 48709;48710;48711 48710 -0.009818037102832022 SSQRGGSSSFS 11 Unmodified _SSQRGGSSSFS_ 0 0 0 REV__ENSG00000164743|ENST00000297324|C8orf48 REV__ENSG00000164743|ENST00000297324|C8orf48 MSMS UPN47_class_I_Rep_2 3 543.7430419921875 2 543.744159 1085.47377 NaN NaN NaN NaN NaN NaN NaN 22.337 1 25.761 25.261 26.261 3.4241 0 0 0 0.38417 1 2634 2634 0.96228 0 1 + 42500 20081 26873 26885 48712 48712 -0.06555288332219789 SSRATSYLY 9 Unmodified _SSRATSYLY_ 0 0 0 L1M2b_dup47|chr3:138649127-138650366:-|6.664954872869689|0.037469501463896|7.47|151.0|7|1|sense L1M2b_dup47|chr3:138649127-138650366:-|6.664954872869689|0.037469501463896|7.47|151.0|7|1|sense L1M2b_dup47|chr3:138649127-138650366:-|6.664954872869689|0.037469501463896|7.47|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.2584228515625 2 524.258914 1046.50327 -0.02922 -1.5319E-05 0.043422 2.2764E-05 0.014202 7.4453E-06 524.76064347765 43.035 0.61359 46.722 46.424 47.038 3.6875 78 42 2 0 0 0 0.32682 1 8732 8732 12.241 1.4167 1 96024 42501 8743 26874 26886 48713 48713 -0.018117243160759244 SSRATSYLY 9 Unmodified _SSRATSYLY_ 0 0 0 L1M2b_dup47|chr3:138649127-138650366:-|6.664954872869689|0.037469501463896|7.47|151.0|7|1|sense L1M2b_dup47|chr3:138649127-138650366:-|6.664954872869689|0.037469501463896|7.47|151.0|7|1|sense L1M2b_dup47|chr3:138649127-138650366:-|6.664954872869689|0.037469501463896|7.47|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.2586669921875 2 524.258914 1046.50327 -0.24747 -0.00012974 0.96697 0.00050694 0.7195 0.00037721 524.2589379968559 43.307 0.63947 46.665 46.402 47.041 3.358 80 42 3 0 0 0 0.30034 2 8872 8872;8926 13.906 1.3745 1 93911 42502 8743 26874 26886 48714;48715 48714 -0.018117243160759244 SSRCCSDEEE 10 Unmodified _SSRCCSDEEE_ 0 0 0 REV__ENST00000306698.6_1_3:20225497-20227662:-|nuORF REV__ENST00000306698.6_1_3:20225497-20227662:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 572.6981811523438 2 572.697703 1143.38085 0.45696 0.0002617 0.70635 0.00040452 1.1633 0.00066622 572.6979312929344 75.294 0.71178 78.607 78.275 78.987 3.3127 93 69 2 0 0 0 0.56118 1 18650 18650 2.9952 0.41776 1 223180 + 42503 21690 26875 26887 48716 48716 -0.18510297172156243 SSRKKKKKKK 10 Unmodified _SSRKKKKKKK_ 0 0 0 L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|6|1|sense L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|6|1|sense L1MA4_dup6913|chr10:98149999-98151224:-|1.3918079833398227|0.1941825823211501|2.84|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 623.4270629882812 2 623.427513 1244.84047 NaN NaN NaN NaN NaN NaN NaN 58.665 1 58.665 58.165 59.165 0 0 0 0 0.53105 1 12923 12923 0 0 1 42504 9721 26876 26888 48717 48717 0.2278470402172843 SSRKRELV 8 Unmodified _SSRKRELV_ 0 0 0 REV__L1MEd_dup764|chr1:96735672-96736457:+|2.006250710781941|0.0215003088235238|6.54|151.0|1|1|sense REV__L1MEd_dup764|chr1:96735672-96736457:+|2.006250710781941|0.0215003088235238|6.54|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7909851074219 2 487.790715 973.566878 0.26781 0.00013064 0.24898 0.00012145 0.51679 0.00025208 487.7907493279484 78.929 0.5596 78.929 78.811 79.37 0 74 54 2 0 0 0 0.82752 1 18499 18499 2.0598 0 1 280850 + 42505 28586 26877 26889 48718 48718 0.07903680911658739 SSRKYAVIKR 10 Unmodified _SSRKYAVIKR_ 0 0 0 L1MEc_dup11983|chr10:73221303-73222834:-|1.7344696301227982|0.2335308349574029|2.89|151.0|43|3|sense L1MEc_dup11983|chr10:73221303-73222834:-|1.7344696301227982|0.2335308349574029|2.89|151.0|43|3|sense L1MEc_dup11983|chr10:73221303-73222834:-|1.7344696301227982|0.2335308349574029|2.89|151.0|43|3|sense MSMS UPN48_class_I_Rep_3 7 604.366455078125 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 103.04 1 106.78 106.28 107.28 3.7434 0 0 0 0.53105 1 24343 24343 0.40072 0 1 42506 13010 26878 26890 48719 48719 0.12459876308230378 SSRLPFLRKY 10 Unmodified _SSRLPFLRKY_ 0 0 0 REV__THE1D_dup4700|chr5:169855824-169856197:-|1.0795442215529212|0.0150893517182543|6.16|151.0|8|2|sense REV__THE1D_dup4700|chr5:169855824-169856197:-|1.0795442215529212|0.0150893517182543|6.16|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 633.8704833984375 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 88.868 1 92.524 92.024 93.024 3.6563 0 0 0 0.53105 1 22221 22221 8.7454 0 1 + 42507 32301 26879 26891 48720 48720 0.10220760451056776 SSRLPFLRKY 10 Unmodified _SSRLPFLRKY_ 0 0 0 REV__THE1D_dup4700|chr5:169855824-169856197:-|1.0795442215529212|0.0150893517182543|6.16|151.0|8|2|sense REV__THE1D_dup4700|chr5:169855824-169856197:-|1.0795442215529212|0.0150893517182543|6.16|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 633.8711547851562 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 89.033 1 92.707 92.207 93.207 3.6738 0 0 0 0.53105 1 22259 22259 5.2969 0 1 + 42508 32301 26879 26891 48721 48721 0.10220760451056776 SSRLYKKYN 9 Unmodified _SSRLYKKYN_ 0 0 0 AluJo_dup69255|chr19:2082814-2083146:-|1.6729885185028628|0.1968192983981602|3.09|151.0|14|3|sense AluJo_dup69255|chr19:2082814-2083146:-|1.6729885185028628|0.1968192983981602|3.09|151.0|14|3|sense AluJo_dup69255|chr19:2082814-2083146:-|1.6729885185028628|0.1968192983981602|3.09|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 579.8173217773438 2 579.81693 1157.61931 NaN NaN NaN NaN NaN NaN NaN 42.706 1 46.347 45.847 46.847 3.6415 0 0 0 0.39518 1 7857 7857 1.8442 0 1 42509 125 26880 26892 48722 48722 0.046802192546238075 SSRQKLSPV 9 Unmodified _SSRQKLSPV_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-MSMS UPN46_class_I_Rep_3 1 501.2908020019531 2 501.290548 1000.56654 0.29795 0.00014936 0.47397 0.00023759 0.77191 0.00038695 501.2906204527461 81.216 0.62479 81.216 80.894 81.519 0 132 64 4 0 0 0 0.43153 1 19156 19156 6.2058 6.2058 1 1004600 + 42510 21389 26881 26893 48723 48723 0.06628261191804086 SSRQKLSPV 9 Unmodified _SSRQKLSPV_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-MSMS UPN47_class_I_Rep_2 3 501.2906799316406 2 501.290548 1000.56654 0.24572 0.00012318 -0.033402 -1.6744E-05 0.21232 0.00010643 501.290421191084 77.617 2.3009 80.949 79.635 81.936 3.3315 416 240 2 0 0 0 0.43153 1 19226 19226 6.2058 6.2058 1 487260 + 42511 21389 26881 26893 48724 48724 0.06628261191804086 SSRQKLSPV 9 Unmodified _SSRQKLSPV_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-MSMS UPN47_class_I_Rep_3 4 501.29046630859375 2 501.290548 1000.56654 0.25658 0.00012862 0.0569 2.8524E-05 0.31348 0.00015714 501.29046924185997 77.545 1.9113 80.814 79.839 81.751 3.269 294 205 2 0 0 0 0.43153 1 19325 19325 6.2058 6.2058 1 439810 + 42512 21389 26881 26893 48725 48725 0.06628261191804086 SSRQKLSPV 9 Unmodified _SSRQKLSPV_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-MSMS UPN48_class_I_Rep_2 6 501.2905578613281 2 501.290548 1000.56654 0.28817 0.00014446 0.21591 0.00010823 0.50408 0.00025269 501.2905334702732 76.915 2.3071 80.527 79.814 82.121 3.6116 397 246 2 0 0 0 0.43153 1 18273 18273 6.2058 6.2058 1 426230 + 42513 21389 26881 26893 48726 48726 0.06628261191804086 SSRQKLSPV 9 Unmodified _SSRQKLSPV_ 0 0 0 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 501.290548 1000.56654 0.22625 0.00011342 0.32325 0.00016204 0.5495 0.00027546 501.29056724714 77.152 1.7236 80.662 79.925 81.648 3.5102 -0.02162 8.5884E-05 NaN 6.2058 335 177 3 NaN NaN NaN NaN 0 NaN NaN 0 492400 + 42514 21389 26881 26893 0.06628261191804086 SSRRKEVI 8 Unmodified _SSRRKEVI_ 0 0 0 L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|31|3|sense L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|31|3|sense L1M2_dup8117|chr16:10406409-10407639:+|1.5284333028061534|0.0235327167647343|6.02|150.0|31|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7901916503906 2 487.790715 973.566878 0.26574 0.00012963 -0.0056855 -2.7733E-06 0.26005 0.00012685 487.7906228399305 78.318 0.29237 78.318 78.137 78.429 0 74 35 3 0 0 0 0.82752 1 18316 18316 2.0598 0 1 273290 42515 8714 26882 26894 48727 48727 0.0790368091164737 SSRRNPLL 8 Unmodified _SSRRNPLL_ 0 0 0 REV__ENST00000484377.5_1_21:34809286-34811585:-|nuORF REV__ENST00000484377.5_1_21:34809286-34811585:-|nuORF MSMS UPN48_class_I_Rep_2 6 471.777587890625 2 471.777608 941.540663 NaN NaN NaN NaN NaN NaN NaN 82.629 1 86.298 85.798 86.798 3.669 0 0 0 0.40738 1 19628 19628 0.79363 0 1 + 42516 22592 26883 26895 48728 48728 0.06755411740175532 SSRRTRAA 8 Unmodified _SSRRTRAA_ 0 0 0 REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF MSMS UPN47_class_I_Rep_1 2 452.758056640625 2 452.757207 903.499861 NaN NaN NaN NaN NaN NaN NaN 20.368 1 23.98 23.48 24.48 3.6118 0 0 0 0.40746 1 2032 2032 0.69038 0 1 + 42517 22538 26884 26896 48729 48729 0.04425070420541033 SSRRTRAA 8 Unmodified _SSRRTRAA_ 0 0 0 REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 452.86962890625 2 452.757207 903.499861 0.24875 0.00011262 -0.70856 -0.0003208 -0.45981 -0.00020818 452.7567677909121 17.841 0.15259 21.493 21.394 21.547 3.6518 25 20 2 0 0 0 0.72333 1 1088 1088 0.69038 0 1 12700 + 42518 22538 26884 26896 48730 48730 0.04425070420541033 SSRTSLLILST 11 Unmodified _SSRTSLLILST_ 0 0 0 REV__LTR106_Mam_dup153|chr4:88028211-88028338:+|1.64929933640941|0.0364746891399981|5.5|150.0|6|1|anti-sense REV__LTR106_Mam_dup153|chr4:88028211-88028338:+|1.64929933640941|0.0364746891399981|5.5|150.0|6|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.3433227539062 2 589.342978 1176.6714 0.45373 0.0002674 0.14705 8.6664E-05 0.60078 0.00035406 589.3429727748734 85.119 1.9609 88.71 88.504 90.465 3.5914 417 257 3 0 0 0 0.65559 1 21343 21343 2.7352 0 1 687910 + 42519 30780 26885 26897 48731 48731 0.09013337877718186 SSRVPLLLP 9 Unmodified _SSRVPLLLP_ 0 0 0 REV__L1M1_dup8461|chr15:49214639-49217072:-|1.1932509002753788|0.04874651086626|4.61|151.0|136|2|anti-sense REV__L1M1_dup8461|chr15:49214639-49217072:-|1.1932509002753788|0.04874651086626|4.61|151.0|136|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 491.95062255859375 2 491.30821 980.601866 0.25543 0.0001255 -0.68972 -0.00033886 -0.43428 -0.00021337 491.3075155071022 71.756 0.030045 71.756 71.731 71.761 0 4 2 2 0 0 0 0.5015 1 16548 16548 0.45834 0 1 31130 + 42520 24157 26886 26898 48732 48732 0.11078923719617251 SSSCRTSNSSQ 11 Unmodified _SSSCRTSNSSQ_ 0 0 0 ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 ENSG00000109790|ENST00000504108|KLHL5 ENSG00000109790|ENST00000504108|KLHL5 MSMS UPN48_class_I_Rep_2 6 572.238525390625 2 572.238384 1142.46221 NaN NaN NaN NaN NaN NaN NaN 16.459 1 20.111 19.611 20.611 3.6527 0 0 0 0.38417 1 821 821 0 0 1 42521 1911 26887 26899 48733 48733 -0.10331853417892489 SSSKNYKM 8 Unmodified _SSSKNYKM_ 0 0 0 REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|72|2|sense REV__L1MA9_dup14297|chr16:22335621-22338774:+|1.1271071408887308|0.1627776594715249|2.79|151.0|72|2|sense MSMS UPN46_class_I_Rep_3 1 472.7476501464844 2 472.728935 943.443317 NaN NaN NaN NaN NaN NaN NaN 96.188 1 96.188 95.688 96.688 0 0 0 0 0.4044 1 23382 23382 4.756 0.81161 1 + 42522 25614 26888 26900 48734 48734 -0.030667382509818708 SSSNDQKCGLY 11 Unmodified _SSSNDQKCGLY_ 0 0 0 REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438 REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438 MSMS UPN47_class_I_Rep_2 3 601.2608642578125 2 601.261327 1200.5081 NaN NaN NaN NaN NaN NaN NaN 68.964 1 72.233 71.733 72.733 3.2696 0 0 0 0.38417 1 16720 16720 2.2828 0.43854 1 + 42523 20792 26889 26901 48735 48735 -0.084132082356291 SSSPHAPESE 10 Unmodified _SSSPHAPESE_ 0 0 0 ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF ENSG00000125850|ENST00000278780|OVOL2 ENSG00000125850|ENST00000278780|OVOL2 MULTI-MSMS UPN46_class_I_Rep_3 1 514.2199096679688 2 514.219985 1026.42542 -0.060306 -3.1011E-05 0.07395 3.8027E-05 0.013644 7.0158E-06 514.2199866141121 24.46 0.99898 24.46 24.087 25.086 0 253 103 4 0 0 0 0.52083 5 3148 3148;3182;3294;3331;3368 9.3831 9.3831 1 623570 42524 2519 26890 26902 48736;48737;48738;48739;48740 48736 -0.08673781972129291 SSSPHAPESE 10 Unmodified _SSSPHAPESE_ 0 0 0 ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF ENSG00000125850|ENST00000278780|OVOL2 ENSG00000125850|ENST00000278780|OVOL2 MULTI-MSMS UPN47_class_I_Rep_1 2 514.219970703125 2 514.219985 1026.42542 -0.2229 -0.00011462 0.43961 0.00022606 0.21671 0.00011144 514.2201658495056 20.922 0.60619 24.566 24.372 24.979 3.6436 85 64 2 0 0 0 0.54822 2 2181 2181;2214 5.7319 0.83484 1 66572 42525 2519 26890 26902 48741;48742 48741 -0.08673781972129291 SSSPHAPESE 10 Unmodified _SSSPHAPESE_ 0 0 0 ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF ENSG00000125850|ENST00000278780|OVOL2 ENSG00000125850|ENST00000278780|OVOL2 MULTI-MSMS UPN47_class_I_Rep_2 3 514.2197265625 2 514.219985 1026.42542 -0.29469 -0.00015153 0.48652 0.00025018 0.19184 9.8646E-05 514.2201681880385 21.277 0.6354 24.685 24.357 24.992 3.4074 119 70 2 0 0 0 0.54822 3 2316 2316;2351;2355 5.7319 0.50118 1 54253 42526 2519 26890 26902 48743;48744;48745 48743 -0.08673781972129291 SSSPHAPESE 10 Unmodified _SSSPHAPESE_ 0 0 0 ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF ENSG00000125850|ENST00000278780|OVOL2 ENSG00000125850|ENST00000278780|OVOL2 MULTI-MSMS UPN47_class_I_Rep_3 4 514.2203979492188 2 514.219985 1026.42542 -0.49093 -0.00025245 0.48623 0.00025003 -0.0047041 -2.419E-06 514.2202406797504 20.859 0.63315 24.209 23.861 24.494 3.3496 76 52 2 0 0 0 0.52083 5 2236 2160;2198;2236;2280;2302 9.3831 0.50118 1 64643 42527 2519 26890 26902 48746;48747;48748;48749;48750 48748 -0.08673781972129291 SSSPHAPESE 10 Unmodified _SSSPHAPESE_ 0 0 0 ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF ENSG00000125850|ENST00000278780|OVOL2 ENSG00000125850|ENST00000278780|OVOL2 MULTI-MSMS UPN48_class_I_Rep_1 5 514.2205810546875 2 514.219985 1026.42542 0.35255 0.00018129 -0.0067508 -3.4714E-06 0.3458 0.00017782 514.219867258596 21.162 0.4437 24.707 24.496 24.94 3.5454 84 56 2 0 0 0 0.54822 3 1876 1851;1876;1909 5.7319 1.4026 1 50575 42528 2519 26890 26902 48751;48752;48753 48752 -0.08673781972129291 SSSPSRNDKK 10 Unmodified _SSSPSRNDKK_ 0 0 0 REV__L1M5_dup735|chr1:43768458-43769420:+|1.3842873967316658|0.0262626896288693|5.72|151.0|27|3|sense REV__L1M5_dup735|chr1:43768458-43769420:+|1.3842873967316658|0.0262626896288693|5.72|151.0|27|3|sense MSMS UPN47_class_I_Rep_1 2 553.2827758789062 2 553.283451 1104.55235 NaN NaN NaN NaN NaN NaN NaN 49.251 1 52.911 52.411 53.411 3.6592 0 0 0 0.53105 1 10698 10698 1.4819 0.15237 1 + 42529 24707 26891 26903 48754 48754 0.004255639728626193 SSSSGQQM 8 Unmodified _SSSSGQQM_ 0 0 0 HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|265|3|anti-sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|265|3|anti-sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|265|3|anti-sense MSMS UPN46_class_I_Rep_3 1 406.1653747558594 2 406.166167 810.317782 NaN NaN NaN NaN NaN NaN NaN 103.93 1 103.93 103.43 104.43 0 0 0 0 0.40604 1 25367 25367 2.5775 0 1 42530 8091 26892 26904 48755 48755 -0.09496450107212695 SSSSRYRL 8 Unmodified _SSSSRYRL_ 0 0 0 REV__ENSG00000143373|ENST00000336715|ZNF687 REV__ENSG00000143373|ENST00000336715|ZNF687 MSMS UPN48_class_I_Rep_1 5 478.0857238769531 2 478.251423 954.488293 NaN NaN NaN NaN NaN NaN NaN 28.805 1 32.356 31.856 32.856 3.5514 0 0 0 0.40625 1 3911 3911 2.3027 0 1 + 42531 19442 26893 26905 48756 48756 0.00922828606553594 SSSVFGVQFDC 11 Unmodified _SSSVFGVQFDC_ 0 0 0 REV__ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|1|intron REV__ENSG00000197386.12,HTT,chr4,+,I44.1,3199940,3202976|27|8.05|1|intron MSMS UPN47_class_I_Rep_3 4 588.2576904296875 2 588.255514 1174.49647 NaN NaN NaN NaN NaN NaN NaN 57.284 1 60.452 59.952 60.952 3.1681 0 0 0 0.38417 1 13227 13227 4.1895 0.24511 1 + 42532 21079 26894 26906 48757 48757 -0.08379405258938277 SSTLQGPQAY 10 Unmodified _SSTLQGPQAY_ 0 0 0 ENST00000591741.5_1_19:6161571-6166006:+|nuORF ENST00000591741.5_1_19:6161571-6166006:+|nuORF ENST00000591741.5_1_19:6161571-6166006:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 526.7584228515625 2 526.256371 1050.49819 -0.28035 -0.00014753 -0.011019 -5.7986E-06 -0.29137 -0.00015333 526.2562213255297 31.547 0.52051 35.016 34.762 35.282 3.4691 47 40 2 0 0 0 0.38974 1 5330 5330 20.415 4.2654 1 66320 42533 7625 26895 26907 48758 48758 -0.025040281787141794 SSTMSESLF 9 Unmodified _SSTMSESLF_ 0 0 0 L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|28|1|anti-sense;L1M4a1_dup913|chr5:70846110-70846663:-|1.2881895225105189|0.0393409289713198|5.03|149.0|28|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|28|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|28|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 494.7196044921875 2 494.718233 987.421912 0.25277 0.00012505 0.91772 0.00045401 1.1705 0.00057906 494.71874669121894 49.777 0.41603 49.777 49.603 50.019 0 51 43 2 0 0 0 0.45688 1 10479 10479 4.756 0 1 143280 42534 8963 26896 26908 48759 48759 -0.07230168070350373 SSTMSESLF 9 Unmodified _SSTMSESLF_ 0 0 0 L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|28|1|anti-sense;L1M4a1_dup913|chr5:70846110-70846663:-|1.2881895225105189|0.0393409289713198|5.03|149.0|28|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|28|1|anti-sense L1M4a1_dup918|chr5:71146899-71147452:+|1.6853749118680248|0.0611843765211769|4.78|150.0|28|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 494.718233 987.421912 0.25277 0.00012505 0.91772 0.00045401 1.1705 0.00057906 494.71874669121894 49.777 0.41603 49.777 49.603 50.019 0 0 0 NaN 4.756 51 43 2 NaN NaN NaN NaN 0 NaN NaN 0 143280 42535 8963 26896 26908 -0.07230168070350373 SSTNAKAYL 9 Unmodified _SSTNAKAYL_ 0 0 0 REV__ENSG00000166450|ENST00000389286|PRTG REV__ENSG00000166450|ENST00000389286|PRTG MSMS UPN46_class_I_Rep_3 1 477.7574157714844 2 477.748182 953.481811 NaN NaN NaN NaN NaN NaN NaN 75.743 1 75.743 75.243 76.243 0 0 0 0 0.3967 1 17629 17629 1.4819 0 1 + 42536 20176 26897 26909 48760 48760 0.0032089065517766358 SSTQYFWYR 9 Unmodified _SSTQYFWYR_ 0 0 0 nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20 nc|ENSG00000163817|Q9NP91-2|SLC6A20 nc|ENSG00000163817|Q9NP91-2|SLC6A20 MSMS UPN47_class_I_Rep_3 4 619.2859497070312 2 619.285463 1236.55637 NaN NaN NaN NaN NaN NaN NaN 38.945 1 42.183 41.683 42.683 3.238 0 0 0 0.4007 1 7639 7639 0.52476 0.066424 1 42537 4048 26898 26910 48761 48761 -0.052443465334590655 SSTYVPVLDK 10 Unmodified _SSTYVPVLDK_ 0 0 0 ENST00000432242.5_1_2:98833411-98885811:+|nuORF;ENST00000448638.5_1_2:98797652-98853199:+|nuORF;nc|ENSG00000168658|Q502W6-7|VWA3B;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B ENST00000432242.5_1_2:98833411-98885811:+|nuORF ENST00000432242.5_1_2:98833411-98885811:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.7967529296875 2 554.797872 1107.58119 NaN NaN NaN NaN NaN NaN NaN 45.009 1 48.709 48.209 49.209 3.6999 0 0 0 0.53105 1 9413 9413 4.897 0 1 42538 4385 26899 26911 48762 48762 0.031702885492677524 SSVFATEVLL 10 Unmodified _SSVFATEVLL_ 0 0 0 REV__L1MC5a_dup13100|chr13:113471405-113472286:+|1.0035489381766134|0.118153099952447|3.09|151.0|22|3|sense REV__L1MC5a_dup13100|chr13:113471405-113472286:+|1.0035489381766134|0.118153099952447|3.09|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 533.2947998046875 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 76.229 1 76.229 75.729 76.729 0 0 0 0 0.53105 1 17768 17768 25.399 1.3787 1 + 42539 27116 26900 26912 48763 48763 0.04567190037619184 SSVLSGLF 8 Unmodified _SSVLSGLF_ 0 0 0 REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|190|2|anti-sense REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|190|2|anti-sense MSMS UPN46_class_I_Rep_3 1 405.2388000488281 2 405.223811 808.433069 NaN NaN NaN NaN NaN NaN NaN 30.874 1 30.874 30.374 31.374 0 0 0 0 0.40604 1 5087 5087 2.5775 0 1 + 42540 24862 26901 26913 48764 48764 0.02119022086105815 SSVNSGRVFY 10 Unmodified _SSVNSGRVFY_ 0 0 0 REV__MLT1J_dup12366|chr15:64629404-64629765:-|1.8417568243380849|0.0697013887414469|4.72|151.0|11|3|sense REV__MLT1J_dup12366|chr15:64629404-64629765:-|1.8417568243380849|0.0697013887414469|4.72|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 558.2923583984375 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 71.07 1 74.281 73.781 74.781 3.2113 0 0 0 0.53105 1 17421 17421 7.2892 0.93513 1 + 42541 31775 26902 26914 48765 48765 -0.011966330504719735 SSVPHIRS 8 Unmodified _SSVPHIRS_ 0 0 0 L1MC4_dup20667|chr15:101203460-101204150:+|1.8152526970923728|0.1162970795159356|3.96|150.0|55|3|anti-sense L1MC4_dup20667|chr15:101203460-101204150:+|1.8152526970923728|0.1162970795159356|3.96|150.0|55|3|anti-sense L1MC4_dup20667|chr15:101203460-101204150:+|1.8152526970923728|0.1162970795159356|3.96|150.0|55|3|anti-sense MSMS UPN47_class_I_Rep_2 3 441.7431640625 2 441.743234 881.471915 NaN NaN NaN NaN NaN NaN NaN 33.514 1 36.953 36.453 37.453 3.4398 0 0 0 0.40604 1 5946 5946 2.5775 0 1 42542 11452 26903 26915 48766 48766 0.026437474404815475 SSVPVGIRL 9 Unmodified _SSVPVGIRL_ 0 0 0 L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|262|2|anti-sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|262|2|anti-sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|262|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 464.0221862792969 2 464.284734 926.554916 0.14089 6.5414E-05 -0.0909 -4.2204E-05 0.049991 2.321E-05 464.2845854091582 58.152 0.20844 58.152 58.01 58.219 0 31 21 2 0 0 0 0.12034 1 12781 12781 7.2892 0 1 138820 42543 13515 26904 26916 48767 48767 0.08870064168456793 SSVTAGTAEEF 11 Unmodified _SSVTAGTAEEF_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MULTI-MSMS UPN48_class_I_Rep_2 6 549.7593383789062 2 549.751118 1097.48768 0.53636 0.00029486 -4.3195 -0.0023747 -3.7832 -0.0020798 549.7489112680662 62.936 0.16793 66.41 66.306 66.474 3.4738 14 9 2 0 0 0 0.4608 1 14106 14106 8.7454 0 1 70953 42544 5795 26905 26917 48768 48768 -0.05716055623815919 SSWHVDEVF 9 Unmodified _SSWHVDEVF_ 0 0 0 MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.2506713867188 2 553.251089 1104.48762 0.57487 0.00031805 -0.074325 -4.112E-05 0.50055 0.00027693 553.2510418333102 56.119 0.65052 59.621 59.36 60.011 3.5014 107 50 3 0 0 0 0.40174 1 12008 12008 7.9102 7.9102 1 245260 42545 15856 26906 26918 48769 48769 -0.06044010833147695 SSWHVDEVF 9 Unmodified _SSWHVDEVF_ 0 0 0 MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 553.251089 1104.48762 0.57487 0.00031805 -0.074325 -4.112E-05 0.50055 0.00027693 553.2510418333102 56.119 0.65052 59.621 59.36 60.011 3.5014 -0.016747 -2.9315E-05 NaN 7.9102 107 50 3 NaN NaN NaN NaN 0 NaN NaN 0 245260 42546 15856 26906 26918 -0.06044010833147695 SSWHVDEVF 9 Unmodified _SSWHVDEVF_ 0 0 0 MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MER21A_dup399|chr3:142484010-142484929:+|3.363886476478515|0.0837605866285018|5.33|151.0|56|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 553.251089 1104.48762 0.61112 0.0003381 -0.17887 -9.8961E-05 0.43225 0.00023914 553.2509778521053 56.12 0.67786 59.653 59.284 59.962 3.5333 0.015576 -0.000145 NaN 7.9102 103 53 3 NaN NaN NaN NaN 0 NaN NaN 0 250090 42547 15856 26906 26918 -0.06044010833147695 SSWKISIVG 9 Unmodified _SSWKISIVG_ 0 0 0 REV__Tigger2_dup1213|chr6:166994403-166995740:-|4.215420152136732|0.3203308169897884|3.72|151.0|74|3|anti-sense REV__Tigger2_dup1213|chr6:166994403-166995740:-|4.215420152136732|0.3203308169897884|3.72|151.0|74|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 488.77734375 2 488.776742 975.538931 0.29374 0.00014357 -0.24649 -0.00012048 0.047257 2.3098E-05 488.77652810071294 71.357 0.65468 74.876 74.601 75.256 3.5185 100 59 2 0 0 0 0.47763 1 16511 16511 2.9952 2.9952 1 259860 + 42548 32625 26907 26919 48770 48770 0.050183579315898896 SSYGCQHSS 9 Unmodified _SSYGCQHSS_ 0 0 0 L1ME3B_dup811|chr2:61388821-61389373:+|1.14786386492888|0.0278996211308192|5.36|151.0|28|1|anti-sense L1ME3B_dup811|chr2:61388821-61389373:+|1.14786386492888|0.0278996211308192|5.36|151.0|28|1|anti-sense L1ME3B_dup811|chr2:61388821-61389373:+|1.14786386492888|0.0278996211308192|5.36|151.0|28|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 478.2084655761719 2 478.182349 954.350144 0.19037 9.103E-05 -3.5673 -0.0017058 -3.377 -0.0016148 478.1821935921259 62.029 0.055176 62.029 61.982 62.037 0 5 4 2 0 0 0 0.12477 1 13834 13834 1.6526 0.96225 1 45569 42549 12740 26908 26920 48771 48771 -0.1288566270420688 SSYGGQIFY 9 Unmodified _SSYGGQIFY_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS UPN48_class_I_Rep_1 5 511.23626708984375 2 511.234907 1020.45526 0.34913 0.00017849 0.3729 0.00019064 0.72203 0.00036913 511.23492697882307 58.053 0.42462 61.54 61.486 61.911 3.487 26 23 2 0 0 0 0.37599 1 12657 12657 9.3831 0 1 63861 42550 3746 26909 26921 48772 48772 -0.05414798236142815 SSYGKLLLI 9 Unmodified _SSYGKLLLI_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS UPN48_class_I_Rep_2 6 497.803955078125 2 497.302593 992.590633 0.32448 0.00016136 0.053436 2.6574E-05 0.37791 0.00018794 497.30256426181296 63.605 0.24873 67.079 66.979 67.228 3.4743 24 17 2 0 0 0 0.37599 1 14305 14305 9.3831 2.66 1 64339 42551 4626 26910 26922 48773 48773 0.09404101625477779 SSYGKLLLI 9 Unmodified _SSYGKLLLI_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MSMS UPN48_class_I_Rep_2 6 497.3025817871094 2 497.302593 992.590633 NaN NaN NaN NaN NaN NaN NaN 63.449 1 66.923 66.423 67.423 3.4738 0 0 0 0.32573 1 14266 14266 9.3831 0.78985 1 42552 4626 26910 26922 48774 48774 0.09404101625477779 SSYGKLLLI 9 Unmodified _SSYGKLLLI_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MSMS UPN48_class_I_Rep_3 7 497.30303955078125 2 497.302593 992.590633 NaN NaN NaN NaN NaN NaN NaN 63.37 1 66.879 66.379 67.379 3.5091 0 0 0 0.25702 1 14162 14162 13.042 1.928 1 42553 4626 26910 26922 48775 48775 0.09404101625477779 SSYHTTPPFY 10 Unmodified _SSYHTTPPFY_ 0 0 0 REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|81|3|anti-sense REV__L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|81|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 600.77294921875 2 600.272021 1198.52949 0.50436 0.00030275 -0.10961 -6.5797E-05 0.39475 0.00023696 600.2718819566431 59.541 1.1775 62.814 62.421 63.598 3.2731 183 75 3 0 0 0 0.54078 1 14068 14068 6.7232 0 1 326050 + 42554 25126 26911 26923 48776 48776 -0.061834551446281694 SSYKGLKGPLR 11 Unmodified _SSYKGLKGPLR_ 0 0 0 REV__L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|120|2|anti-sense REV__L1PB1_dup8382|chrX:118992251-118994408:+|1.9914249242760675|0.141826869768906|3.81|150.0|120|2|anti-sense MSMS UPN47_class_I_Rep_2 3 603.4189453125 2 603.35368 1204.69281 NaN NaN NaN NaN NaN NaN NaN 108.13 1 111.66 111.16 112.16 3.5333 0 0 0 0.38417 1 26201 26201 5.2969 1.3525 1 + 42555 30502 26912 26924 48777 48777 0.09864767697104071 SSYLDPLSFFL 11 Unmodified _SSYLDPLSFFL_ 0 0 0 L1PREC2_dup362|chr1:176153409-176154291:-|1.0109981826141132|0.0067240418426515|7.23|151.0|41|2|anti-sense L1PREC2_dup362|chr1:176153409-176154291:-|1.0109981826141132|0.0067240418426515|7.23|151.0|41|2|anti-sense L1PREC2_dup362|chr1:176153409-176154291:-|1.0109981826141132|0.0067240418426515|7.23|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_2 3 644.8271484375 2 644.826629 1287.63871 NaN NaN NaN NaN NaN NaN NaN 50.238 1 53.581 53.081 54.081 3.3431 0 0 0 0.38417 1 11025 11025 2.7352 0 1 42556 15446 26913 26925 48778 48778 0.0063913075484833826 SSYLDPLSFFL 11 Unmodified _SSYLDPLSFFL_ 0 0 0 L1PREC2_dup362|chr1:176153409-176154291:-|1.0109981826141132|0.0067240418426515|7.23|151.0|41|2|anti-sense L1PREC2_dup362|chr1:176153409-176154291:-|1.0109981826141132|0.0067240418426515|7.23|151.0|41|2|anti-sense L1PREC2_dup362|chr1:176153409-176154291:-|1.0109981826141132|0.0067240418426515|7.23|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_3 4 644.828369140625 2 644.826629 1287.63871 NaN NaN NaN NaN NaN NaN NaN 50.417 1 53.644 53.144 54.144 3.2262 0 0 0 0.38417 1 11136 11136 2.7352 0 1 42557 15446 26913 26925 48779 48779 0.0063913075484833826 SSYLLPGSL 9 Unmodified _SSYLLPGSL_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MULTI-MSMS UPN47_class_I_Rep_3 4 468.7555236816406 2 468.755475 935.496398 0.0052415 2.457E-06 -0.22096 -0.00010358 -0.21572 -0.00010112 468.7553649803903 87.508 0.22034 90.895 90.757 90.977 3.3873 33 25 2 0 0 0 0.33654 1 21903 21903 11.64 0 1 160920 42558 2537 26914 26926 48780 48780 0.026069628033383196 SSYSYGDA 8 Unmodified _SSYSYGDA_ 0 0 0 REV__L1MEf_dup8473|chr12:57344179-57344818:+|1.7842030895929777|0.0110951891893759|7.33|151.0|31|1|anti-sense REV__L1MEf_dup8473|chr12:57344179-57344818:+|1.7842030895929777|0.0110951891893759|7.33|151.0|31|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 425.16448974609375 2 425.16669 848.318828 0.03939 1.6747E-05 -0.91819 -0.00039038 -0.8788 -0.00037364 425.1649276795286 60.71 0.12083 60.71 60.625 60.746 0 16 12 2 0 0 0 0.82752 1 13483 13483 2.3027 0 1 136780 + 42559 28696 26915 26927 48781 48781 -0.11139912466660462 SSYTFLADLF 10 Unmodified _SSYTFLADLF_ 0 0 0 REV__L1PA5_dup10784|chr19:19917951-19924055:-|2.080591601360478|0.0770285729121315|4.76|150.0|228|1|anti-sense REV__L1PA5_dup10784|chr19:19917951-19924055:-|2.080591601360478|0.0770285729121315|4.76|150.0|228|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.2854614257812 2 582.284597 1162.55464 0.52693 0.00030683 -0.023423 -1.3639E-05 0.50351 0.00029319 582.2844963067781 65.189 0.82919 68.697 68.361 69.19 3.5077 131 55 4 0 0 0 0.56078 1 14843 14843 3.2813 0 1 495310 + 42560 29711 26916 26928 48782 48782 -0.020134003420707813 SSYTTSCYVY 10 Unmodified _SSYTTSCYVY_ 0 0 0 REV__L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|73|2|sense REV__L1PA8_dup3727|chr7:107517996-107522186:+|2.8382989788318214|0.0692814208283461|5.36|151.0|73|2|sense MSMS UPN47_class_I_Rep_2 3 587.3271484375 2 587.242072 1172.46959 NaN NaN NaN NaN NaN NaN NaN 62.446 1 65.705 65.205 66.205 3.2594 0 0 0 0.53105 1 14747 14747 1.8442 0.19162 1 + 42561 30226 26917 26929 48783 48783 -0.10974513870155533 STAAEPFYIL 10 Unmodified _STAAEPFYIL_ 0 0 0 L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|88|1|anti-sense L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|88|1|anti-sense L1MB5_dup5426|chr10:21849555-21851772:+|2.186587853324138|0.0167182344260533|7.03|151.0|88|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.7899780273438 2 556.28714 1110.55973 0.42221 0.00023487 1.6612 0.00092409 2.0834 0.001159 556.2880412144892 58.896 1.2878 62.314 61.903 63.191 3.4171 243 85 5 0 0 0 0.54466 1 13510 13510 6.2058 0.47393 1 1495300 42562 10623 26918 26930 48784 48784 0.008869035205634646 STARILGR 8 Unmodified _STARILGR_ 0 0 0 REV__ENSG00000108523|ENST00000262482|RNF167 REV__ENSG00000108523|ENST00000262482|RNF167 MSMS UPN48_class_I_Rep_3 7 437.2673645019531 2 437.266876 872.519199 NaN NaN NaN NaN NaN NaN NaN 49.352 1 52.981 52.481 53.481 3.6291 0 0 0 0.40527 1 9898 9898 3.5965 0 1 + 42563 18384 26919 26931 48785 48785 0.07784026711487968 STARSNATY 9 Unmodified _STARSNATY_ 0 0 0 REV__L1MCa_dup239|chr1:111659607-111660446:-|4.264468595663081|0.0203678324990919|7.71|151.0|19|2|sense REV__L1MCa_dup239|chr1:111659607-111660446:-|4.264468595663081|0.0203678324990919|7.71|151.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 485.7317810058594 2 485.733063 969.451573 NaN NaN NaN NaN NaN NaN NaN 28.395 1 31.729 31.229 32.229 3.3337 0 0 0 0.3824 1 4447 4447 4.897 0.95262 1 + 42564 27191 26920 26932 48786 48786 -0.03437468010008615 STAVLDRKA 9 Unmodified _STAVLDRKA_ 0 0 0 L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|38|2|sense L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|38|2|sense L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 480.7761535644531 2 480.777274 959.539994 NaN NaN NaN NaN NaN NaN NaN 30.606 1 34.088 33.588 34.588 3.4821 0 0 0 0.39598 1 5068 5068 1.6526 0.85899 1 42565 10612 26921 26933 48787 48787 0.05860572300480271 STDEFLVSY 9 Unmodified _STDEFLVSY_ 0 0 0 REV__ENST00000565945.1_1_16:28602037-28603024:+|nuORF REV__ENST00000565945.1_1_16:28602037-28603024:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 530.7454833984375 2 530.745305 1059.47606 0.31107 0.0001651 0.50551 0.0002683 0.81658 0.00043339 530.7456001137983 59.375 0.39615 62.649 62.5 62.896 3.2731 46 27 2 0 0 0 0.28552 1 13849 13849 14.838 0 1 79889 + 42566 20590 26922 26934 48788 48788 -0.05130252647131783 STDKAEYTFY 10 Unmodified _STDKAEYTFY_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 612.774658203125 2 612.774593 1223.53463 0.088191 5.4041E-05 0.047521 2.912E-05 0.13571 8.3161E-05 612.77455054041 43.359 0.97893 47.046 46.694 47.673 3.6875 172 58 4 0 0 0 0.17281 6 8930 8847;8888;8930;8973;9016;9059 62.869 62.869 1 643590 42567 4357 26923 26935 48789;48790;48791;48792;48793;48794 48791 -0.06819196072660816 STDKAEYTFY 10 Unmodified _STDKAEYTFY_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 612.7747802734375 2 612.774593 1223.53463 0.10513 6.4422E-05 0.91035 0.00055784 1.0155 0.00062226 612.7753910317406 44.014 0.33276 47.709 47.569 47.902 3.6951 20 20 2 0 0 0 0.35325 1 9067 9067 23.79 4.3508 1 72880 42568 4357 26923 26935 48795 48795 -0.06819196072660816 STDKAEYTFY 10 Unmodified _STDKAEYTFY_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 612.7743530273438 2 612.774593 1223.53463 0.14845 9.0965E-05 0.00073714 4.517E-07 0.14918 9.1417E-05 612.7745829681652 43.713 1.1379 47.071 46.67 47.808 3.358 163 67 4 0 0 0 0.21193 8 9095 8957;8995;9038;9082;9095;9135;9173;9178 51.488 51.488 1 628900 42569 4357 26923 26935 48796;48797;48798;48799;48800;48801;48802;48803 48800 -0.06819196072660816 STDKAEYTFY 10 Unmodified _STDKAEYTFY_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 612.7745971679688 2 612.774593 1223.53463 0.16659 0.00010208 -0.10461 -6.4102E-05 0.061981 3.798E-05 612.7745299087633 43.855 1.0182 47.097 46.689 47.707 3.2419 175 61 4 0 0 0 0.2133 8 9145 9025;9063;9102;9145;9188;9225;9262;9316 53.317 53.317 1 535410 42570 4357 26923 26935 48804;48805;48806;48807;48808;48809;48810;48811 48807 -0.06819196072660816 STDKAEYTFY 10 Unmodified _STDKAEYTFY_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MSMS UPN47_class_I_Rep_3 4 612.7754516601562 2 612.774593 1223.53463 NaN NaN NaN NaN NaN NaN NaN 44.781 1 48.025 47.525 48.525 3.2441 0 0 0 0.53105 1 9424 9424 7.1017 0.89594 1 42571 4357 26923 26935 48812 48812 -0.06819196072660816 STDKFKTDFY 10 Unmodified _STDKFKTDFY_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MULTI-MSMS UPN47_class_I_Rep_1 2 626.2979736328125 2 626.298236 1250.58192 0.022446 1.4058E-05 -0.081689 -5.1162E-05 -0.059244 -3.7104E-05 626.2981126247627 38.787 0.6039 42.452 42.208 42.812 3.6652 69 38 2 0 0 0 0.51963 6 7549 7460;7504;7536;7549;7578;7591 9.544 4.647 1 88087 42572 4352 26924 26936 48813;48814;48815;48816;48817;48818 48816 -0.03334916801645704 STDKFKTDFY 10 Unmodified _STDKFKTDFY_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MULTI-MSMS UPN47_class_I_Rep_2 3 626.296630859375 2 626.298236 1250.58192 0.044987 2.8175E-05 -0.24497 -0.00015343 -0.19998 -0.00012525 626.2979524299834 39.174 0.65224 42.552 42.296 42.948 3.3785 56 34 2 0 0 0 0.56189 2 7707 7707;7751 2.4985 0.8804 1 90083 42573 4352 26924 26936 48819;48820 48819 -0.03334916801645704 STDKFKTDFY 10 Unmodified _STDKFKTDFY_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MULTI-MSMS UPN47_class_I_Rep_3 4 626.2973022460938 2 626.298236 1250.58192 -0.03744 -2.3448E-05 -0.10935 -6.8484E-05 -0.14679 -9.1932E-05 626.2979082172532 39.261 0.53938 42.499 42.285 42.824 3.238 46 36 2 0 0 0 0.53794 2 7744 7744;7783 7.1017 3.5052 1 79449 42574 4352 26924 26936 48821;48822 48821 -0.03334916801645704 STDLDDGGLY 10 Unmodified _STDLDDGGLY_ 0 0 0 REV__ENSG00000023839|ENST00000647814|ABCC2 REV__ENSG00000023839|ENST00000647814|ABCC2 MULTI-MSMS UPN47_class_I_Rep_2 3 528.2302856445312 2 528.230019 1054.44548 -0.21911 -0.00011574 0.61616 0.00032548 0.39705 0.00020973 528.230400370006 13.744 0.2839 17.133 17.031 17.315 3.388 60 33 3 0 0 0 0.56078 1 392 392 3.2813 0 1 64686 + 42575 17615 26925 26937 48823 48823 -0.07956031032153987 STDPQHHAY 9 Unmodified _STDPQHHAY_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_1 2 528.2301635742188 2 528.230687 1054.44682 -0.17339 -9.1589E-05 -0.69457 -0.00036689 -0.86796 -0.00045848 528.2302221116175 13.654 0.28004 17.111 17.015 17.295 3.457 58 33 3 0 0 0 0.46869 1 403 403 3.9444 0.66309 1 76365 42576 4633 26926 26938 48824 48824 -0.07822352152766143 STDPQHHAY 9 Unmodified _STDPQHHAY_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_3 4 528.2306518554688 2 528.230687 1054.44682 -0.50597 -0.00026727 -0.51501 -0.00027205 -1.021 -0.00053931 528.2304588001849 13.742 0.2854 17.112 17.026 17.312 3.3699 54 30 3 0 0 0 0.44742 1 382 382 5.2969 2.0156 1 66429 42577 4633 26926 26938 48825 48825 -0.07822352152766143 STDPRPASY 9 Unmodified _STDPRPASY_ 0 0 0 ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron;ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|3|intron;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1 ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 497.236328125 2 497.235439 992.456324 -0.3082 -0.00015325 0.56073 0.00027882 0.25254 0.00012557 497.23564107355566 22.84 0.61501 26.544 26.244 26.859 3.7042 89 56 2 0 0 0 0.38714 1 2805 2805 8.7454 1.4562 1 108050 42578 1645 26927 26939 48826 48826 -0.040205838672363825 STDPRPASY 9 Unmodified _STDPRPASY_ 0 0 0 ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron;ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|3|intron;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1 ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron MULTI-SECPEP UPN47_class_I_Rep_2 3 497.2356262207031 2 497.235439 992.456324 -0.15238 -7.5768E-05 0.19871 9.8807E-05 0.046333 2.3038E-05 497.23545382046467 23.1 0.61807 26.545 26.239 26.857 3.4447 105 55 3 0 0 0 0.039766 1 2812 2812 55.503 33.756 1 116360 42579 1645 26927 26939 48827 48827 -0.040205838672363825 STDPRPASY 9 Unmodified _STDPRPASY_ 0 0 0 ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron;ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|3|intron;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1 ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron ENSG00000103126.15,AXIN1,chr16,-,I4.1,304442,309972|26|7.71|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 497.2351379394531 2 497.235439 992.456324 -0.5104 -0.00025379 0.46918 0.00023329 -0.04122 -2.0496E-05 497.2355977350678 23.152 0.58404 26.503 26.186 26.77 3.3503 88 46 2 0 0 0 0.21414 1 2945 2945 19.362 5.4559 1 115410 42580 1645 26927 26939 48828 48828 -0.040205838672363825 STDQVGEFF 9 Unmodified _STDQVGEFF_ 0 0 0 nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 MSMS UPN47_class_I_Rep_2 3 515.2291259765625 2 515.229822 1028.44509 NaN NaN NaN NaN NaN NaN NaN 64.103 1 67.359 66.859 67.859 3.2556 0 0 0 0.25702 1 15248 15248 13.042 2.9685 1 42581 5809 26928 26940 48829 48829 -0.0679940596137385 STDVSDLLHQY 11 Unmodified _STDVSDLLHQY_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MSMS UPN47_class_I_Rep_1 2 639.304443359375 2 639.304049 1276.59355 NaN NaN NaN NaN NaN NaN NaN 59.588 1 62.986 62.486 63.486 3.3982 0 0 0 0.38417 1 13848 13848 4.5289 1.5336 1 42582 5510 26929 26941 48830 48830 -0.03368719778313789 STDVSDLLHQY 11 Unmodified _STDVSDLLHQY_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MSMS UPN47_class_I_Rep_2 3 639.3037109375 2 639.304049 1276.59355 NaN NaN NaN NaN NaN NaN NaN 59.628 1 62.901 62.401 63.401 3.2731 0 0 0 0.38417 1 13893 13893 2.4985 1.0166 1 42583 5510 26929 26941 48831 48831 -0.03368719778313789 STDVSDLLHQY 11 Unmodified _STDVSDLLHQY_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MSMS UPN47_class_I_Rep_2 3 639.304443359375 2 639.304049 1276.59355 NaN NaN NaN NaN NaN NaN NaN 59.873 1 63.146 62.646 63.646 3.2731 0 0 0 0.38417 1 13969 13969 6.1918 3.6934 1 42584 5510 26929 26941 48832 48832 -0.03368719778313789 STDVSDLLHQY 11 Unmodified _STDVSDLLHQY_ 0 0 0 nc|ENSG00000204264|P28062-2|PSMB8;ENSG00000204264|ENST00000374882|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 nc|ENSG00000204264|P28062-2|PSMB8 MSMS UPN47_class_I_Rep_3 4 639.3042602539062 2 639.304049 1276.59355 NaN NaN NaN NaN NaN NaN NaN 59.75 1 62.916 62.416 63.416 3.1651 0 0 0 0.23778 1 13982 13982 15.739 8.6369 1 42585 5510 26929 26941 48833 48833 -0.03368719778313789 STDWHVVNY 9 Unmodified _STDWHVVNY_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS UPN47_class_I_Rep_2 3 560.7562866210938 2 560.756538 1119.49852 0.39109 0.0002193 -0.29329 -0.00016446 0.0978 5.4842E-05 560.7562466962639 49.006 0.82887 52.353 51.955 52.784 3.3465 77 47 2 0 0 0 0.43982 1 10709 10709 5.7319 0.43497 1 192100 42586 3469 26930 26942 48834 48834 -0.05644608458851508 STEFDVVFNA 10 Unmodified _STEFDVVFNA_ 0 0 0 ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 MULTI-MSMS UPN47_class_I_Rep_3 4 564.76416015625 2 564.764029 1127.5135 0.46335 0.00026168 -0.40305 -0.00022763 0.060297 3.4053E-05 564.7636840244788 77.59 0.63419 80.859 80.506 81.14 3.269 104 67 2 0 0 0 0.47413 2 19261 19261;19342 13.906 2.2658 1 119460 42587 4848 26931 26943 48835;48836 48835 -0.04515161381505095 STEPIVSPFR 10 Unmodified _STEPIVSPFR_ 0 0 0 REV__nc|ENSG00000164488|Q5SW24-3|DACT2 REV__nc|ENSG00000164488|Q5SW24-3|DACT2 MULTI-MSMS UPN48_class_I_Rep_3 7 566.8037109375 2 566.803488 1131.59242 0.33912 0.00019221 -0.24176 -0.00013703 0.097356 5.5182E-05 566.8032592234075 55.904 0.96675 59.459 59.012 59.979 3.5554 175 75 3 0 0 0 0.55148 1 12047 12047 5.2969 0 1 551350 + 42588 20066 26932 26944 48837 48837 0.031891106434159155 STERHISY 8 Unmodified _STERHISY_ 0 0 0 L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.2356262207031 2 496.743431 991.472308 -0.14745 -7.3244E-05 0.38305 0.00019028 0.2356 0.00011703 496.7436150436282 23.063 0.45217 26.508 26.267 26.72 3.4447 72 38 2 0 0 0 0.82752 1 2812 2812 20.871 6.2895 1 104680 42589 9687 26933 26945 48838 48838 -0.02376877630342733 STETHKQY 8 Unmodified _STETHKQY_ 0 0 0 REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 497.2353515625 2 497.235439 992.456324 -0.3082 -0.00015325 0.56073 0.00027882 0.25254 0.00012557 497.23564107355566 22.84 0.61501 26.544 26.244 26.859 3.7042 89 56 2 0 0 0 0.82752 1 2664 2664 2.0598 0.21551 1 108050 + 42590 22409 26934 26946 48839 48839 -0.040205838672363825 STETSSGFDYN 11 Unmodified _STETSSGFDYN_ 0 0 0 REV__ENSG00000154165|ENST00000284311|GPR15 REV__ENSG00000154165|ENST00000284311|GPR15 MSMS UPN47_class_I_Rep_2 3 604.2418212890625 2 604.241115 1206.46768 NaN NaN NaN NaN NaN NaN NaN 113.34 1 116.86 116.36 117.36 3.5171 0 0 0 0.38417 1 27567 27567 1.1933 0.50296 1 + 42591 19728 26935 26947 48840 48840 -0.12729851354401944 STFEYIPKR 9 Unmodified _STFEYIPKR_ 0 0 0 L1MB3_dup13664|chr15:65476476-65477135:+|1.4825091578130998|0.0726922612023429|4.35|151.0|2|1|sense L1MB3_dup13664|chr15:65476476-65477135:+|1.4825091578130998|0.0726922612023429|4.35|151.0|2|1|sense L1MB3_dup13664|chr15:65476476-65477135:+|1.4825091578130998|0.0726922612023429|4.35|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8070068359375 2 570.806031 1139.59751 0.60619 0.00034602 0.36871 0.00021046 0.9749 0.00055648 570.8063686471123 55.793 0.47583 59.349 58.989 59.465 3.5559 49 30 2 0 0 0 0.48643 1 11907 11907 2.0598 0 1 114770 42592 10344 26936 26948 48841 48841 0.0332941450603812 STFIRRKNQV 10 Unmodified _STFIRRKNQV_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|2|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|2|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 624.7479858398438 2 624.862203 1247.70985 -0.074516 -4.6562E-05 -0.32345 -0.00020211 -0.39796 -0.00024867 624.8620129932029 12.107 0.36689 15.557 15.462 15.829 3.45 119 50 4 0 0 0 0.56317 1 10 10 3.2813 0 1 197360 42593 9614 26937 26949 48842 48842 0.09590688302864692 STFKDTFTL 9 Unmodified _STFKDTFTL_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS UPN48_class_I_Rep_1 5 530.2705688476562 2 530.27149 1058.52843 0.39513 0.00020953 -0.40887 -0.00021681 -0.013739 -7.2857E-06 530.2711535544212 56.202 0.53719 59.703 59.434 59.971 3.5014 61 42 2 0 0 0 0.19092 2 12110 12110;12117 21.59 7.6841 1 122110 42594 1600 26938 26950 48843;48844 48843 0.0015033048648547265 STFKDTFTL 9 Unmodified _STFKDTFTL_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MSMS UPN48_class_I_Rep_2 6 530.2708740234375 2 530.27149 1058.52843 NaN NaN NaN NaN NaN NaN NaN 56.327 1 59.86 59.36 60.36 3.5333 0 0 0 0.15288 1 12087 12087 19.362 2.4196 1 42595 1600 26938 26950 48845 48845 0.0015033048648547265 STFKDTFTL 9 Unmodified _STFKDTFTL_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS UPN48_class_I_Rep_3 7 530.2717895507812 2 530.27149 1058.52843 0.38758 0.00020552 -0.47427 -0.00025149 -0.086697 -4.5973E-05 530.2711437017281 56.081 0.46093 59.636 59.366 59.827 3.5554 68 39 2 0 0 0 0.12096 1 11943 11943 29.841 7.1043 1 182250 42596 1600 26938 26950 48846 48846 0.0015033048648547265 STFRVEYLT 9 Unmodified _STFRVEYLT_ 0 0 0 LTR19-int_dup165|chr14:60097374-60097973:+|4.109404680817402|0.1181604924780659|5.12|151.0|12|3|sense LTR19-int_dup165|chr14:60097374-60097973:+|4.109404680817402|0.1181604924780659|5.12|151.0|12|3|sense LTR19-int_dup165|chr14:60097374-60097973:+|4.109404680817402|0.1181604924780659|5.12|151.0|12|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 557.788818359375 2 558.290214 1114.56587 0.032503 1.8146E-05 -1.1213 -0.000626 -1.0888 -0.00060786 558.2905614861991 41.47 0.05389 44.707 44.664 44.718 3.2372 6 4 2 0 0 0 0.12477 1 8413 8413 1.6526 0 1 42067 42597 15584 26939 26951 48847 48847 0.01317421752082737 STFSYTCLPSV 11 Unmodified _STFSYTCLPSV_ 0 0 0 L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|97|2|anti-sense L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|97|2|anti-sense L1MA3_dup3195|chr5:131761259-131763282:+|2.2179022632887877|0.0357750390311156|5.95|151.0|97|2|anti-sense MSMS UPN48_class_I_Rep_2 6 602.7799682617188 2 602.781364 1203.54818 NaN NaN NaN NaN NaN NaN NaN 68.817 1 72.325 71.825 72.825 3.5083 0 0 0 0.38417 1 15897 15897 2.7352 0.89096 1 42598 9525 26940 26952 48848 48848 -0.04545661565089176 STGTKKTKKK 10 Unmodified _STGTKKTKKK_ 0 0 0 L1M8_dup131|chr2:23716989-23718025:+|1.460441389201058|0.0875495758944285|4.06|150.0|19|2|sense L1M8_dup131|chr2:23716989-23718025:+|1.460441389201058|0.0875495758944285|4.06|150.0|19|2|sense L1M8_dup131|chr2:23716989-23718025:+|1.460441389201058|0.0875495758944285|4.06|150.0|19|2|sense MSMS UPN48_class_I_Rep_2 6 554.1759033203125 2 553.84823 1105.68191 NaN NaN NaN NaN NaN NaN NaN 114.48 1 118.14 117.64 118.64 3.6616 0 0 0 0.53105 1 27365 27365 0 0 1 42599 9241 26941 26953 48849 48849 0.13329365322783815 STHHLHYVL 9 Unmodified _STHHLHYVL_ 0 0 0 L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|51|2|anti-sense L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|51|2|anti-sense L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_1 2 553.7887573242188 2 553.790715 1105.56688 NaN NaN NaN NaN NaN NaN NaN 54.201 1 57.702 57.202 58.202 3.5014 0 0 0 0.39428 1 12207 12207 2.0598 0.21551 1 42600 14741 26942 26954 48850 48850 0.018316809116413424 STHKAVITAAS 11 Unmodified _STHKAVITAAS_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1 REV__ENSG00000137076|ENST00000314888|TLN1 MSMS UPN46_class_I_Rep_3 1 543.3029174804688 2 543.301113 1084.58767 NaN NaN NaN NaN NaN NaN NaN 97.8 1 97.8 97.3 98.3 0 0 0 0 0.38417 1 23807 23807 1.0715 0.27783 1 + 42601 19212 26943 26955 48851 48851 0.04876226500641678 STHQQRQAML 10 Unmodified _STHQQRQAML_ 0 0 0 HERVH-int_dup1015|chr3:32461948-32463605:-|2.8765103062045223|0.0884572891259589|5.02|151.0|34|3|sense HERVH-int_dup1015|chr3:32461948-32463605:-|2.8765103062045223|0.0884572891259589|5.02|151.0|34|3|sense HERVH-int_dup1015|chr3:32461948-32463605:-|2.8765103062045223|0.0884572891259589|5.02|151.0|34|3|sense MSMS UPN48_class_I_Rep_2 6 600.3016357421875 2 600.301121 1198.58769 NaN NaN NaN NaN NaN NaN NaN 28.351 1 31.982 31.482 32.482 3.6311 0 0 0 0.53105 1 3890 3890 1.3295 0.25807 1 42602 8130 26944 26956 48852 48852 -0.003660967709720353 STHTLWAAY 9 Unmodified _STHTLWAAY_ 0 0 0 L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|231|1|anti-sense L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|231|1|anti-sense L1PA5_dup7846|chr10:84485744-84491876:-|1.6977397311862823|0.1011846810601626|4.07|151.0|231|1|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2537841796875 2 525.256174 1048.49779 NaN NaN NaN NaN NaN NaN NaN 30.857 1 34.602 34.102 35.102 3.7449 0 0 0 0.38478 1 5098 5098 4.3292 1.44 1 42603 14511 26945 26957 48853 48853 -0.024514031078979315 STIEYVIQR 9 Unmodified _STIEYVIQR_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS UPN48_class_I_Rep_1 5 554.80419921875 2 554.803488 1107.59242 0.49397 0.00027405 -0.22666 -0.00012575 0.26731 0.0001483 554.803241157819 44.142 0.52983 47.656 47.352 47.881 3.5132 75 39 2 0 0 0 0.053261 2 8353 8353;8395 47.594 17.935 1 160230 42604 1562 26946 26958 48854;48855 48854 0.0429311064342528 STIEYVIQR 9 Unmodified _STIEYVIQR_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS UPN48_class_I_Rep_2 6 554.8031616210938 2 554.803488 1107.59242 0.41963 0.00023281 -0.32584 -0.00018078 0.093787 5.2033E-05 554.8031576762538 43.838 0.60007 47.599 47.304 47.904 3.7617 78 45 2 0 0 0 0.022868 4 8261 8236;8261;8291;8307 61.602 25.475 1 158760 42605 1562 26946 26958 48856;48857;48858;48859 48857 0.0429311064342528 STIEYVIQR 9 Unmodified _STIEYVIQR_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS UPN48_class_I_Rep_3 7 554.8040161132812 2 554.803488 1107.59242 0.31382 0.00017411 -0.38529 -0.00021376 -0.071466 -3.9649E-05 554.8031599765279 44.009 0.68475 47.647 47.326 48.01 3.6385 71 43 2 0 0 0 0.038999 4 8271 8223;8227;8271;8316 53.404 24.322 1 144850 42606 1562 26946 26958 48860;48861;48862;48863 48862 0.0429311064342528 STIIFQTEF 9 Unmodified _STIIFQTEF_ 0 0 0 REV__L1PA8A_dup2327|chr18:70098646-70102889:-|1.5495973949816269|0.327991047508759|2.24|151.0|265|3|anti-sense REV__L1PA8A_dup2327|chr18:70098646-70102889:-|1.5495973949816269|0.327991047508759|2.24|151.0|265|3|anti-sense MSMS UPN47_class_I_Rep_1 2 543.2814331054688 2 543.279315 1084.54408 NaN NaN NaN NaN NaN NaN NaN 51.703 1 55.297 54.797 55.797 3.5932 0 0 0 0.39598 1 11448 11448 1.6526 0 1 + 42607 30272 26947 26959 48864 48864 0.005186170035358373 STILFVLDVI 10 Unmodified _STILFVLDVI_ 0 0 0 L1MEi_dup1015|chr3:43306437-43307305:-|1.1344363006149338|0.0780167408610864|3.86|151.0|35|1|anti-sense L1MEi_dup1015|chr3:43306437-43307305:-|1.1344363006149338|0.0780167408610864|3.86|151.0|35|1|anti-sense L1MEi_dup1015|chr3:43306437-43307305:-|1.1344363006149338|0.0780167408610864|3.86|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_2 6 560.3367919921875 2 560.336633 1118.65871 NaN NaN NaN NaN NaN NaN NaN 100.8 1 104.55 104.05 105.05 3.7417 0 0 0 0.53105 1 23933 23933 1.4819 0 1 42608 13445 26948 26960 48865 48865 0.10412926485469143 STITIASKTK 10 Unmodified _STITIASKTK_ 0 0 0 L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|16|2|sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|16|2|sense L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 525.3143310546875 2 525.313689 1048.61282 NaN NaN NaN NaN NaN NaN NaN 74.657 1 78.223 77.723 78.723 3.5659 0 0 0 0.53105 1 17498 17498 1.4819 0 1 42609 13102 26949 26961 48866 48866 0.09046281303221804 STKDPLKSL 9 Unmodified _STKDPLKSL_ 0 0 0 L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|3|1|sense L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|3|1|sense L1MEc_dup8707|chr7:152227378-152227765:+|1.0606219136896644|0.0155200804514263|6.09|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.78753662109375 2 494.787307 987.560061 0.33045 0.0001635 -0.070975 -3.5118E-05 0.25947 0.00012838 494.7873776837182 51.572 0.55856 54.911 54.685 55.243 3.3386 43 27 2 0 0 0 0.45441 1 11489 11489 4.897 0 1 115640 42610 13152 26950 26962 48867 48867 0.06578323240421469 STKGRLNLRV 10 Unmodified _STKGRLNLRV_ 0 0 0 L1MCc_dup2086|chrX:73966199-73966429:-|1.0827719986038231|0.0639977689430838|4.08|151.0|2|1|sense L1MCc_dup2086|chrX:73966199-73966429:-|1.0827719986038231|0.0639977689430838|4.08|151.0|2|1|sense L1MCc_dup2086|chrX:73966199-73966429:-|1.0827719986038231|0.0639977689430838|4.08|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 572.3508911132812 2 572.351471 1142.68839 NaN NaN NaN NaN NaN NaN NaN 30.235 1 30.235 29.735 30.735 0 0 0 0 0.53105 1 4894 4894 0 0 1 42611 11859 26951 26963 48868 48868 0.12275303274145699 STKHIQINRY 10 Unmodified _STKHIQINRY_ 0 0 0 REV__L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|29|1|sense REV__L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|29|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 630.345458984375 2 630.346386 1258.67822 -0.066943 -4.2197E-05 -0.65072 -0.00041018 -0.71767 -0.00045238 630.3459605518045 12.864 0.18717 16.314 16.241 16.428 3.45 28 14 3 0 0 0 0.56354 1 194 194 1.3295 0.80477 1 67475 + 42612 30255 26952 26964 48869 48869 0.05922695548952106 STKLEFGN 8 Unmodified _STKLEFGN_ 0 0 0 REV__L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|31|2|sense REV__L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 448.22943115234375 2 448.229625 894.444697 0.17696 7.9321E-05 -1.4152 -0.00063432 -1.2382 -0.000555 448.22926580485097 109.24 0.59915 112.84 112.68 113.28 3.6046 129 69 3 0 0 0 0.82752 1 26937 26937 4.756 0 1 3082500 + 42613 26740 26953 26965 48870 48870 -0.006747808905743113 STKLFRRQ 8 Unmodified _STKLFRRQ_ 0 0 0 L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|61|2|sense L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|61|2|sense L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|61|2|sense MSMS UPN46_class_I_Rep_3 1 518.3084716796875 2 518.306532 1034.59851 NaN NaN NaN NaN NaN NaN NaN 34.935 1 34.935 34.435 35.435 0 0 0 0 0.40659 1 6299 6299 1.8442 0 1 42614 11250 26954 26966 48871 48871 0.08259673665611444 STKLVALPRRQ 11 Unmodified _STKLVALPRRQ_ 0 0 0 REV__nc|ENSG00000156970|O60566-2|BUB1B REV__nc|ENSG00000156970|O60566-2|BUB1B MULTI-MSMS UPN47_class_I_Rep_3 4 423.59771728515625 3 423.598094 1267.77245 -0.50697 -0.00021475 -0.51764 -0.00021927 -1.0246 -0.00043402 423.59785744774314 98.805 0.16652 102.24 102.16 102.32 3.4328 33 24 2 0 0 0 0.61292 1 24456 24456 2.2527 0.34635 1 648430 + 42615 19813 26955 26967 48872 48872 0.1492783437106482 STKLVALPRRQ 11 Unmodified _STKLVALPRRQ_ 0 0 0 REV__nc|ENSG00000156970|O60566-2|BUB1B REV__nc|ENSG00000156970|O60566-2|BUB1B MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 423.598094 1267.77245 -0.33135 -0.00014036 -0.64555 -0.00027345 -0.97689 -0.00041381 423.5977438151018 98.548 0.70448 102.04 101.51 102.21 3.4897 -0.18742 -1.1599E-05 NaN 2.2527 180 98 2 NaN NaN NaN NaN 0 NaN NaN 0 578550 + 42616 19813 26955 26967 0.1492783437106482 STKQLRRV 8 Unmodified _STKQLRRV_ 0 0 0 REV__Tigger1_dup1361|chr2:97260446-97261258:-|1.7244253478040414|0.1067905626767755|4.01|151.0|6|1|sense REV__Tigger1_dup1361|chr2:97260446-97261258:-|1.7244253478040414|0.1067905626767755|4.01|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 494.30853271484375 2 494.306532 986.598512 NaN NaN NaN NaN NaN NaN NaN 57.166 1 60.457 59.957 60.957 3.2912 0 0 0 0.40753 1 13142 13142 0.6015 0 1 + 42617 32381 26956 26968 48873 48873 0.10467673665618804 STLFYFSHY 9 Unmodified _STLFYFSHY_ 0 0 0 MER21-int_dup454|chr8:130067932-130069243:+|1.077285301206328|0.0278856367702732|5.27|151.0|85|3|anti-sense MER21-int_dup454|chr8:130067932-130069243:+|1.077285301206328|0.0278856367702732|5.27|151.0|85|3|anti-sense MER21-int_dup454|chr8:130067932-130069243:+|1.077285301206328|0.0278856367702732|5.27|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.7716064453125 2 582.771657 1163.52876 -0.048933 -2.8517E-05 -0.32884 -0.00019164 -0.37778 -0.00022016 582.7714237558204 35.582 0.80154 39.259 38.93 39.731 3.6762 130 52 3 0 0 0 0.41259 1 6672 6672 7.2892 2.96 1 366490 42618 15849 26957 26969 48874 48874 -0.04646249793654533 STLHITVKGK 10 Unmodified _STLHITVKGK_ 0 0 0 Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|35|3|sense Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|35|3|sense Tigger2_dup1214|chr6:166996046-166997158:-|1.0495541231696246|0.0615912073053428|4.09|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 542.329833984375 2 542.329673 1082.64479 0.45566 0.00024712 0.072038 3.9069E-05 0.52769 0.00028618 542.3296140242747 57.904 0.88599 61.436 61.15 62.036 3.5317 112 60 2 0 0 0 0.44401 1 12504 12504 16.149 2.2431 1 670670 42619 33276 26958 26970 48875 48875 0.10677693777029162 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 526.3349609375 2 526.334759 1050.65496 0.41235 0.00021703 -0.080581 -4.2413E-05 0.33177 0.00017462 526.3346316698231 57.897 1.5899 61.391 60.802 62.392 3.4942 328 112 4 0 0 0 0.0054033 9 12696 12461;12496;12531;12569;12611;12653;12696;12772;12815 134.3 53.074 1 4487600 42620 3335 26959 26971 48876;48877;48878;48879;48880;48881;48882;48883;48884 48882 0.13166301502246824 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 526.3348999023438 2 526.334759 1050.65496 0.49859 0.00026243 -0.19803 -0.00010423 0.30056 0.0001582 526.3346233711552 57.823 1.3097 61.337 60.869 62.179 3.5142 266 87 4 0 0 0 0.0053074 10 12638 12438;12477;12515;12557;12598;12638;12676;12716;12757;12797 134.3 45.342 1 7294000 42621 3335 26959 26971 48885;48886;48887;48888;48889;48890;48891;48892;48893;48894 48890 0.13166301502246824 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MSMS UPN48_class_I_Rep_2 6 526.335205078125 2 526.334759 1050.65496 NaN NaN NaN NaN NaN NaN NaN 58.823 1 62.322 61.822 62.822 3.4987 0 0 0 0.070158 1 12847 12847 31.268 1.0435 1 42622 3335 26959 26971 48895 48895 0.13166301502246824 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 526.3347778320312 2 526.334759 1050.65496 0.38238 0.00020126 -0.13241 -6.9691E-05 0.24997 0.00013157 526.334662943356 57.647 1.6318 61.178 60.653 62.285 3.5317 279 121 3 0 0 0 0.0047521 8 12397 12316;12356;12397;12436;12473;12520;12560;12711 147.06 58.105 1 6588100 42623 3335 26959 26971 48896;48897;48898;48899;48900;48901;48902;48903 48898 0.13166301502246824 STLIATLQSR 10 Unmodified _STLIATLQSR_ 0 0 0 REV__AluJo_dup55791|chr14:55060862-55061162:+|1.2714712740621756|0.4859427916997587|1.39|151.0|15|1|anti-sense REV__AluJo_dup55791|chr14:55060862-55061162:+|1.2714712740621756|0.4859427916997587|1.39|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 545.316650390625 2 545.316763 1088.61897 0.46152 0.00025168 0.13464 7.3423E-05 0.59617 0.0003251 545.316617338891 81.753 2.687 85.076 84.249 86.936 3.3231 527 313 3 0 0 0 0.56354 1 20847 20847 1.3295 0 1 410740 + 42624 17010 26960 26972 48904 48904 0.07820799534761136 STLIATLQSR 10 Unmodified _STLIATLQSR_ 0 0 0 REV__AluJo_dup55791|chr14:55060862-55061162:+|1.2714712740621756|0.4859427916997587|1.39|151.0|15|1|anti-sense REV__AluJo_dup55791|chr14:55060862-55061162:+|1.2714712740621756|0.4859427916997587|1.39|151.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 545.3171997070312 2 545.316763 1088.61897 0.44913 0.00024492 0.10448 5.6973E-05 0.55361 0.00030189 545.3166361449478 82.343 0.56902 85.918 85.73 86.299 3.5753 112 69 3 0 0 0 0.56118 1 19704 19704 2.9952 1.5133 1 200720 + 42625 17010 26960 26972 48905 48905 0.07820799534761136 STLIATLQSR 10 Unmodified _STLIATLQSR_ 0 0 0 REV__AluJo_dup55791|chr14:55060862-55061162:+|1.2714712740621756|0.4859427916997587|1.39|151.0|15|1|anti-sense REV__AluJo_dup55791|chr14:55060862-55061162:+|1.2714712740621756|0.4859427916997587|1.39|151.0|15|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.38223 0.00020844 0.0026124 1.4246E-06 0.38484 0.00020986 545.3166691333885 85.959 0.094391 85.959 85.926 86.02 0 0.020298 -6.3431E-05 NaN 2.9952 27 10 3 NaN NaN NaN NaN 0 NaN NaN 0 661950 + 42626 17010 26960 26972 0.07820799534761136 STLILSKRN 9 Unmodified _STLILSKRN_ 0 0 0 REV__ENSG00000105613|ENST00000251472|MAST1 REV__ENSG00000105613|ENST00000251472|MAST1 MULTI-MSMS UPN47_class_I_Rep_3 4 516.314208984375 2 516.314023 1030.61349 0.33726 0.00017413 0.097051 5.0109E-05 0.43431 0.00022424 516.3140083763391 90.334 1.1488 93.731 93.288 94.437 3.3976 463 155 5 0 0 0 0.42249 1 22654 22654 6.7232 0 1 4462600 + 42627 18297 26961 26973 48906 48906 0.0994112074295117 STLILSKRN 9 Unmodified _STLILSKRN_ 0 0 0 REV__ENSG00000105613|ENST00000251472|MAST1 REV__ENSG00000105613|ENST00000251472|MAST1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 516.314023 1030.61349 0.23699 0.00012236 0.21206 0.00010949 0.44904 0.00023185 516.314044194411 90.25 0.93042 93.707 93.279 94.21 3.4571 -0.10055 3.01E-05 NaN 6.7232 477 133 5 NaN NaN NaN NaN 0 NaN NaN 0 4212700 + 42628 18297 26961 26973 0.0994112074295117 STLILSKRN 9 Unmodified _STLILSKRN_ 0 0 0 REV__ENSG00000105613|ENST00000251472|MAST1 REV__ENSG00000105613|ENST00000251472|MAST1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 516.314023 1030.61349 0.33726 0.00017413 0.097051 5.0109E-05 0.43431 0.00022424 516.3140083763391 90.334 1.1488 93.731 93.288 94.437 3.3976 -0.075897 -8.8661E-05 NaN 6.7232 463 155 5 NaN NaN NaN NaN 0 NaN NaN 0 4462600 + 42629 18297 26961 26973 0.0994112074295117 STLILSKRN 9 Unmodified _STLILSKRN_ 0 0 0 REV__ENSG00000105613|ENST00000251472|MAST1 REV__ENSG00000105613|ENST00000251472|MAST1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 516.314023 1030.61349 0.36177 0.00018679 0.22912 0.0001183 0.59089 0.00030508 516.3141392639457 89.906 1.0009 93.753 93.294 94.295 3.847 -0.05426 4.7715E-05 NaN 6.7232 552 136 5 NaN NaN NaN NaN 0 NaN NaN 0 10542000 + 42630 18297 26961 26973 0.0994112074295117 STLIRRSF 8 Unmodified _STLIRRSF_ 0 0 0 ENST00000258886.12_1_15:78780095-78780526:+|nuORF ENST00000258886.12_1_15:78780095-78780526:+|nuORF ENST00000258886.12_1_15:78780095-78780526:+|nuORF MSMS UPN46_class_I_Rep_3 1 490.28558349609375 2 490.287808 978.561064 NaN NaN NaN NaN NaN NaN NaN 57.67 1 57.67 57.17 58.17 0 0 0 0 0.4044 1 12650 12650 4.756 0 1 42631 5942 26962 26974 48907 48907 0.07092582399991443 STLISCFILI 10 Unmodified _STLISCFILI_ 0 0 0 MLT1D_dup716|chr1:110887848-110888270:+|1.3142155121996075|0.0163523032171147|6.33|151.0|31|3|anti-sense MLT1D_dup716|chr1:110887848-110888270:+|1.3142155121996075|0.0163523032171147|6.33|151.0|31|3|anti-sense MLT1D_dup716|chr1:110887848-110888270:+|1.3142155121996075|0.0163523032171147|6.33|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_3 7 555.319091796875 2 555.317386 1108.62022 NaN NaN NaN NaN NaN NaN NaN 96.987 1 100.9 100.4 101.4 3.9084 0 0 0 0.53105 1 22990 22990 1.6526 0 1 42632 16358 26963 26975 48908 48908 0.07025297579320977 STLLHYFSF 9 Unmodified _STLLHYFSF_ 0 0 0 L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|54|1|anti-sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|54|1|anti-sense L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.7824096679688 2 557.782025 1113.5495 0.51954 0.00028979 -0.27884 -0.00015553 0.2407 0.00013426 557.7818315699086 66.258 0.37057 69.745 69.54 69.911 3.4866 47 27 3 0 0 0 0.46869 1 15149 15149 3.9444 0 1 111830 42633 9229 26964 26976 48909 48909 -0.002736594140287707 STLLSALNAR 10 Unmodified _STLLSALNAR_ 0 0 0 REV__L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|117|3|anti-sense REV__L1ME1_dup15374|chr8:89714750-89716382:-|1.3412142805036085|0.4758081871397112|1.5|150.0|117|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3035278320312 2 523.303655 1044.59276 0.32535 0.00017025 -0.1951 -0.00010209 0.13025 6.816E-05 523.3034028106493 84.116 0.17081 84.116 84.035 84.206 0 44 19 3 0 0 0 0.56078 1 20002 20002 3.2813 0 1 850210 + 42634 27612 26965 26977 48910 48910 0.07224530363259873 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3424682617188 2 589.342978 1176.6714 0.54458 0.00032094 -0.026645 -1.5703E-05 0.51793 0.00030524 589.3428193246185 86.869 0.35211 86.869 86.704 87.056 0 80 34 3 0 0 0 0.64297 1 20746 20746 3.8763 3.8763 1 834770 42635 15140 26966 26978 48911 48911 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3432006835938 2 589.342978 1176.6714 0.54451 0.00032091 0.057095 3.3649E-05 0.60161 0.00035455 589.3428629303361 89.298 0.19393 89.298 89.245 89.439 0 34 18 3 0 0 0 0.54441 1 21491 21491 6.6304 2.1015 1 1060400 42636 15140 26966 26978 48912 48912 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.34326171875 2 589.342978 1176.6714 0.45373 0.0002674 0.14705 8.6664E-05 0.60078 0.00035406 589.3429727748734 85.119 1.9609 88.71 88.504 90.465 3.5914 417 257 3 0 0 0 0.66059 1 21501 21501 2.2828 0 1 687910 42637 15140 26966 26978 48913 48913 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 589.3428344726562 2 589.342978 1176.6714 0.42433 0.00025008 0.26933 0.00015873 0.69366 0.0004088 589.3429974177485 85.116 2.1657 88.722 87.999 90.165 3.6059 491 275 3 0 0 0 0.67398 1 20687 20687 1.0715 1.0715 1 932810 42638 15140 26966 26978 48914 48914 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.3438110351562 2 589.342978 1176.6714 0.53363 0.00031449 0.15883 9.3604E-05 0.69246 0.0004081 589.3429622980241 85.118 1.7719 88.867 88.425 90.197 3.7494 459 233 3 0 0 0 0.66059 1 20508 20508 2.2828 2.2828 1 836890 42639 15140 26966 26978 48915 48915 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.342978 1176.6714 0.54458 0.00032094 -0.026645 -1.5703E-05 0.51793 0.00030524 589.3428193246185 86.869 0.35211 86.869 86.704 87.056 0 0.0044566 -2.3102E-05 NaN 3.8763 80 34 3 NaN NaN NaN NaN 0 NaN NaN 0 834770 42640 15140 26966 26978 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.342978 1176.6714 0.54451 0.00032091 0.057095 3.3649E-05 0.60161 0.00035455 589.3428629303361 89.298 0.19393 89.298 89.245 89.439 0 0.0059351 -2.4722E-05 NaN 6.6304 34 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1060400 42641 15140 26966 26978 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 589.342978 1176.6714 0.47978 0.00028276 0.037279 2.197E-05 0.51706 0.00030473 589.3428447456781 83.16 1.3926 86.841 86.355 87.748 3.6814 -0.023647 5.2244E-05 NaN 3.8763 242 163 2 NaN NaN NaN NaN 0 NaN NaN 0 302590 42642 15140 26966 26978 0.09013337877718186 STLLTTLVRSS 11 Unmodified _STLLTTLVRSS_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|28|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 589.342978 1176.6714 0.53822 0.0003172 -0.1316 -7.7556E-05 0.40663 0.00023964 589.3427995486146 83.09 1.2868 86.796 86.401 87.688 3.7066 -0.068307 -0.00014681 NaN 3.8763 227 164 2 NaN NaN NaN NaN 0 NaN NaN 0 267530 42643 15140 26966 26978 0.09013337877718186 STLMHLVYF 9 Unmodified _STLMHLVYF_ 0 0 0 L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|11|2|sense L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|11|2|sense L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 555.7866821289062 2 555.786253 1109.55795 0.40929 0.00022748 -0.12696 -7.0565E-05 0.28232 0.00015691 555.7861505957873 62.177 0.49762 65.687 65.554 66.052 3.5104 83 42 3 0 0 0 0.48414 1 13863 13863 2.3027 0 1 268590 42644 12957 26967 26979 48916 48916 0.0075557123095677525 STLPPRING 9 Unmodified _STLPPRING_ 0 0 0 REV__L1MD1_dup1751|chr4:99917567-99919302:-|2.5017964070919985|0.2011087092181904|3.64|151.0|117|3|anti-sense REV__L1MD1_dup1751|chr4:99917567-99919302:-|2.5017964070919985|0.2011087092181904|3.64|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_1 2 477.7744140625 2 477.771991 953.529429 NaN NaN NaN NaN NaN NaN NaN 63.981 1 67.337 66.837 67.837 3.3557 0 0 0 0.36505 1 15175 15175 7.2892 1.0834 1 + 42645 27299 26968 26980 48917 48917 0.05080589646047429 STLTAHKII 9 Unmodified _STLTAHKII_ 0 0 0 ENSG00000197360|ENST00000357774|ZNF98;ENSG00000213967|ENST00000594466|ZNF726;ENSG00000229676|ENST00000456783|ZNF492 ENSG00000197360|ENST00000357774|ZNF98;ENSG00000229676|ENST00000456783|ZNF492 ENSG00000197360|ENST00000357774|ZNF98 MULTI-SECPEP UPN48_class_I_Rep_3 7 491.79595947265625 2 492.297842 982.581131 0.14385 7.0816E-05 -0.38987 -0.00019193 -0.24602 -0.00012111 492.2976851114358 49.553 0.43725 53.182 53.009 53.447 3.6291 50 28 2 0 0 0 0.12281 1 9915 9915 4.3292 0.73274 1 149420 42646 5364;5672 26969 26981 48918 48918 0.08914333339953373 STLTMRWGV 9 Unmodified _STLTMRWGV_ 0 0 0 REV__L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|13|1|sense REV__L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|13|1|sense MSMS UPN48_class_I_Rep_3 7 525.7721557617188 2 525.773677 1049.5328 NaN NaN NaN NaN NaN NaN NaN 44.052 1 47.69 47.19 48.19 3.6385 0 0 0 0.39518 1 8273 8273 1.8442 0.19162 1 + 42647 29594 26970 26982 48919 48919 0.010015164283913691 STLVVIIFTS 10 Unmodified _STLVVIIFTS_ 0 0 0 REV__L1MEc_dup4414|chr4:139329182-139330124:-|2.06343640217814|0.0153206300165233|7.07|151.0|51|2|anti-sense REV__L1MEc_dup4414|chr4:139329182-139330124:-|2.06343640217814|0.0153206300165233|7.07|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_3 4 540.3219604492188 2 540.320983 1078.62741 NaN NaN NaN NaN NaN NaN NaN 109.59 1 113.12 112.62 113.62 3.5347 0 0 0 0.53105 1 26926 26926 6.7232 0 1 + 42648 28457 26971 26983 48920 48920 0.09124353451397837 STNGGRSSKSF 11 Unmodified _STNGGRSSKSF_ 0 0 0 REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|35|2|sense REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|35|2|sense MSMS UPN47_class_I_Rep_3 4 564.2744750976562 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 25.4 1 28.751 28.251 29.251 3.3509 0 0 0 0.38417 1 3565 3565 0.96228 0.16864 1 + 42649 25915 26972 26984 48921 48921 -0.021507225441837363 STPSGYLEL 9 Unmodified _STPSGYLEL_ 0 0 0 ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26;ENSG00000270231.4,NBPF8,chr1,+,I8.1,120441490,120442840|30|5.66|6|intron;ENSG00000162825|ENST00000698833|NBPF20;ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENSG00000263956|ENST00000682118|NBPF11;ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENSG00000263956|ENST00000682118|NBPF11 MULTI-MSMS UPN47_class_I_Rep_1 2 483.742431640625 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.21527 1 9911 9911 19.257 0 1 1297200 42650 5793;6598 26973 26985 48922 48922 -0.013539314389618085 STPSGYLEL 9 Unmodified _STPSGYLEL_ 0 0 0 ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26;ENSG00000270231.4,NBPF8,chr1,+,I8.1,120441490,120442840|30|5.66|6|intron;ENSG00000162825|ENST00000698833|NBPF20;ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENSG00000263956|ENST00000682118|NBPF11;ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENSG00000263956|ENST00000682118|NBPF11 MULTI-MSMS UPN47_class_I_Rep_2 3 483.7423400878906 2 483.742565 965.470577 0.064223 3.1067E-05 -0.086121 -4.166E-05 -0.021898 -1.0593E-05 483.742428791502 46.889 1.0416 50.24 49.827 50.869 3.3515 222 71 4 0 0 0 0.082592 3 10058 9977;10058;10103 37.974 0 1 1214200 42651 5793;6598 26973 26985 48923;48924;48925 48924 -0.013539314389618085 STPSGYLEL 9 Unmodified _STPSGYLEL_ 0 0 0 ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000273136|B4DH59|NBPF26;ENSG00000270231.4,NBPF8,chr1,+,I8.1,120441490,120442840|30|5.66|6|intron;ENSG00000162825|ENST00000698833|NBPF20;ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENSG00000263956|ENST00000682118|NBPF11;ENST00000401087.3_3_1:149089877-149094694:-|nuORF ENSG00000263956|ENST00000682118|NBPF11 MULTI-MSMS UPN47_class_I_Rep_3 4 483.74237060546875 2 483.742565 965.470577 0.0061026 2.9521E-06 -0.066631 -3.2232E-05 -0.060528 -2.928E-05 483.74245566486627 46.945 1.0336 50.189 49.798 50.831 3.2439 183 66 4 0 0 0 0.15122 2 10089 10089;10165 25.399 0 1 1396700 42652 5793;6598 26973 26985 48926;48927 48926 -0.013539314389618085 STPVHFLLF 9 Unmodified _STPVHFLLF_ 0 0 0 REV__L1ME3B_dup118|chr1:44444741-44445231:-|8.68150615297941|0.0021392947509612|11.99|151.0|35|3|anti-sense REV__L1ME3B_dup118|chr1:44444741-44445231:-|8.68150615297941|0.0021392947509612|11.99|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 530.794677734375 2 530.794935 1059.57532 NaN NaN NaN NaN NaN NaN NaN 98.034 1 98.034 97.534 98.534 0 0 0 0 0.39518 1 23865 23865 1.8442 0 1 + 42653 28044 26974 26986 48928 48928 0.04791234828257984 STQEKVRLK 9 Unmodified _STQEKVRLK_ 0 0 0 L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|18|3|sense L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|18|3|sense L1M3f_dup171|chr3:196794252-196795012:+|1.25231940845851|0.0224905059155342|5.8|151.0|18|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 545.326904296875 2 544.824755 1087.63496 0.50243 0.00027374 -0.18416 -0.00010034 0.31827 0.0001734 544.8245387563912 89.004 0.7051 92.833 92.292 92.997 3.8293 114 92 2 0 0 0 0.12532 1 21015 21015 0.52476 0 1 128460 42654 8798 26975 26987 48929 48929 0.09464505771643417 STQQCAQNRT 10 Unmodified _STQQCAQNRT_ 0 0 0 REV__MLT1C_dup9873|chr9:37185452-37185886:-|1.149232063320943|0.1776522096600413|2.69|151.0|8|2|sense REV__MLT1C_dup9873|chr9:37185452-37185886:-|1.149232063320943|0.1776522096600413|2.69|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 568.7581787109375 2 568.759286 1135.50402 NaN NaN NaN NaN NaN NaN NaN 114.57 1 118.05 117.55 118.55 3.4802 0 0 0 0.53105 1 28138 28138 1.1933 0.39971 1 + 42655 31661 26976 26988 48930 48930 -0.058312529387194445 STRAPFTEI 9 Unmodified _STRAPFTEI_ 0 0 0 ENSG00000107140|ENST00000336395|TESK1 ENSG00000107140|ENST00000336395|TESK1 ENSG00000107140|ENST00000336395|TESK1 MULTI-MSMS UPN48_class_I_Rep_1 5 511.2689208984375 2 511.269281 1020.52401 0.22153 0.00011326 0.31921 0.0001632 0.54074 0.00027646 511.26955531535367 48.351 1.045 51.875 51.55 52.595 3.5239 130 71 3 0 0 0 0.11355 2 9666 9666;9754 31.268 5.0002 1 267780 42656 1812 26977 26989 48931;48932 48931 0.014568660635518427 STRAPFTEI 9 Unmodified _STRAPFTEI_ 0 0 0 ENSG00000107140|ENST00000336395|TESK1 ENSG00000107140|ENST00000336395|TESK1 ENSG00000107140|ENST00000336395|TESK1 MULTI-MSMS UPN48_class_I_Rep_3 7 511.27001953125 2 511.269281 1020.52401 0.20843 0.00010656 0.41545 0.0002124 0.62387 0.00031897 511.26956565094906 48.276 0.98306 51.91 51.516 52.5 3.6339 109 71 2 0 0 0 0.40701 1 9644 9644 7.609 1.4032 1 323980 42657 1812 26977 26989 48933 48933 0.014568660635518427 STRDYIYY 8 Unmodified _STRDYIYY_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 540.7632446289062 2 540.753464 1079.49238 0.19185 0.00010374 -0.70703 -0.00038233 -0.51518 -0.00027859 540.7531153379073 44.798 0.57308 48.042 47.763 48.336 3.2441 43 36 2 0 0 0 0.82752 1 9462 9462 18.135 0 1 78445 42658 1699 26978 26990 48934 48934 -0.0441912669039084 STRGSILVY 9 Unmodified _STRGSILVY_ 0 0 0 REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|199|3|anti-sense REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|199|3|anti-sense MSMS UPN47_class_I_Rep_1 2 498.2781066894531 2 498.279649 994.544745 NaN NaN NaN NaN NaN NaN NaN 80.325 1 83.79 83.29 84.29 3.465 0 0 0 0.34056 1 20015 20015 8.5933 2.2392 1 + 42659 28103 26979 26991 48935 48935 0.04725456443236453 STRKMMKKM 9 Unmodified _STRKMMKKM_ 0 0 0 ENST00000536889.1_1_X:102564780-102564858:-|nuORF ENST00000536889.1_1_X:102564780-102564858:-|nuORF ENST00000536889.1_1_X:102564780-102564858:-|nuORF MSMS UPN46_class_I_Rep_3 1 570.80615234375 2 570.806139 1139.59773 NaN NaN NaN NaN NaN NaN NaN 73.209 1 73.209 72.709 73.709 0 0 0 0 0.4029 1 16962 16962 0 0 1 42660 7335 26980 26992 48936 48936 0.03351051638401259 STRPNGHPM 9 Unmodified _STRPNGHPM_ 0 0 0 REV__L1M2_dup1235|chr2:202742817-202744152:+|3.973926587295999|0.0650298022499438|5.93|151.0|2|1|sense REV__L1M2_dup1235|chr2:202742817-202744152:+|3.973926587295999|0.0650298022499438|5.93|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 498.7376708984375 2 498.737625 995.460698 0.33201 0.00016559 -0.61418 -0.00030632 -0.28218 -0.00014073 498.73723796231286 62.311 0.5418 65.774 65.572 66.114 3.4625 50 40 2 0 0 0 0.42249 1 13969 13969 6.7232 0.36906 1 263310 + 42661 24178 26981 26993 48937 48937 -0.03721397925312431 STRPNGHPM 9 Unmodified _STRPNGHPM_ 0 0 0 REV__L1M2_dup1235|chr2:202742817-202744152:+|3.973926587295999|0.0650298022499438|5.93|151.0|2|1|sense REV__L1M2_dup1235|chr2:202742817-202744152:+|3.973926587295999|0.0650298022499438|5.93|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 498.737625 995.460698 0.33201 0.00016559 -0.61418 -0.00030632 -0.28218 -0.00014073 498.73723796231286 62.311 0.5418 65.774 65.572 66.114 3.4625 0.054524 -4.4566E-05 NaN 6.7232 50 40 2 NaN NaN NaN NaN 0 NaN NaN 0 263310 + 42662 24178 26981 26993 -0.03721397925312431 STRRRMMGVPS 11 Unmodified _STRRRMMGVPS_ 0 0 0 ENST00000569798.5_1_16:30078899-30079970:+|nuORF ENST00000569798.5_1_16:30078899-30079970:+|nuORF ENST00000569798.5_1_16:30078899-30079970:+|nuORF MSMS UPN47_class_I_Rep_1 2 639.3319091796875 2 639.331898 1276.64924 NaN NaN NaN NaN NaN NaN NaN 101 1 104.8 104.3 105.3 3.7942 0 0 0 0.38417 1 24939 24939 2.7352 0.89096 1 42663 7508 26982 26994 48938 48938 0.021985116566611396 STRRSIPKHI 10 Unmodified _STRRSIPKHI_ 0 0 0 L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8564453125 2 597.856921 1193.69929 0.57523 0.0003439 -0.92139 -0.00055086 -0.34616 -0.00020696 597.8563689964643 100.76 0.090271 100.76 100.73 100.82 0 10 9 2 0 0 0 0.56486 1 24587 24587 0.40072 0 1 122660 42664 13672 26983 26995 48939 48939 0.11018705648439209 STRRSIPKHI 10 Unmodified _STRRSIPKHI_ 0 0 0 L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 597.856921 1193.69929 0.51703 0.00030911 -0.55436 -0.00033143 -0.037325 -2.2315E-05 597.8565892482594 97.017 0.14302 100.79 100.77 100.91 3.7767 0.020839 0.0002501 NaN 0.40072 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 96299 42665 13672 26983 26995 0.11018705648439209 STRRSIPKHI 10 Unmodified _STRRSIPKHI_ 0 0 0 L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|142|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 597.856921 1193.69929 0.41337 0.00024714 0.12102 7.2354E-05 0.5344 0.00031949 597.8563275233302 97.151 0.074814 100.76 100.75 100.82 3.6088 -0.012189 0.0010577 NaN 0.40072 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 53122 42666 13672 26983 26995 0.11018705648439209 STSALFLIEF 10 Unmodified _STSALFLIEF_ 0 0 0 L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|79|3|anti-sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|79|3|anti-sense L1ME1_dup23390|chr13:21026790-21027929:-|1.8521334018530085|0.0131815535520148|7.13|151.0|79|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.30322265625 2 564.30279 1126.59103 NaN NaN NaN NaN NaN NaN NaN 89.576 1 93.323 92.823 93.823 3.7471 0 0 0 0.53105 1 21350 21350 13.042 0 1 42667 12317 26984 26996 48940 48940 0.032794765546668714 STSISTSLQY 10 Unmodified _STSISTSLQY_ 0 0 0 L1ME1_dup18457|chrX:123996388-123996850:-|1.2043370854752595|0.0049690035333494|7.92|150.0|19|1|anti-sense L1ME1_dup18457|chrX:123996388-123996850:-|1.2043370854752595|0.0049690035333494|7.92|150.0|19|1|anti-sense L1ME1_dup18457|chrX:123996388-123996850:-|1.2043370854752595|0.0049690035333494|7.92|150.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7691040039062 2 543.769311 1085.52407 NaN NaN NaN NaN NaN NaN NaN 16.091 1 19.588 19.088 20.088 3.4968 0 0 0 0.53105 1 973 973 2.9952 0.26005 1 42668 12270 26985 26997 48941 48941 -0.015271787270876303 STSTRDLYAT 10 Unmodified _STSTRDLYAT_ 0 0 0 nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P MULTI-MSMS UPN47_class_I_Rep_1 2 557.773193359375 2 557.772385 1113.53022 0.41575 0.00023189 0.067474 3.7635E-05 0.48322 0.00026953 557.772275788471 61.277 0.71947 64.659 64.377 65.096 3.3815 106 52 3 0 0 0 0.55148 1 14292 14292 5.2969 1.7004 1 337470 42669 16798 26986 26998 48942 48942 -0.02200660495577722 STSTRDLYAT 10 Unmodified _STSTRDLYAT_ 0 0 0 nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P nc|ENSG00000198022|A6NJ88|SAGE2P MULTI-SECPEP UPN47_class_I_Rep_3 4 558.243408203125 2 557.772385 1113.53022 0.38851 0.0002167 -0.091012 -5.0764E-05 0.2975 0.00016594 557.7722179592237 61.606 0.71857 64.773 64.452 65.171 3.1667 96 51 2 0 0 0 0.84575 1 14458 14458 5.2969 3.4526 1 587330 42670 16798 26986 26998 48943 48943 -0.02200660495577722 STSVMISEI 9 Unmodified _STSVMISEI_ 0 0 0 L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|128|3|anti-sense L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|128|3|anti-sense L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|128|3|anti-sense MSMS UPN47_class_I_Rep_3 4 483.98175048828125 2 483.74425 965.473948 NaN NaN NaN NaN NaN NaN NaN 47.655 1 50.895 50.395 51.395 3.2405 0 0 0 0.29868 1 10301 10301 10.824 0 1 42671 15218 26987 26999 48944 48944 -0.010170046566031488 STTIPPRLV 9 Unmodified _STTIPPRLV_ 0 0 0 REV__ENSG00000272333|ENST00000420124|KMT2B REV__ENSG00000272333|ENST00000420124|KMT2B MULTI-SECPEP UPN48_class_I_Rep_2 6 491.79608154296875 2 492.297842 982.581131 0.31979 0.00015743 -0.70281 -0.00034599 -0.38302 -0.00018856 492.29753721659176 52.773 0.3942 56.383 56.316 56.71 3.6098 36 23 2 0 0 0 0.12462 1 11046 11046 1.8442 0 1 161680 + 42672 21421 26988 27000 48945 48945 0.08914333339942004 STTSLWEHPI 10 Unmodified _STTSLWEHPI_ 0 0 0 REV__MSTB_dup6217|chr12:64633253-64633666:+|1.2443054555250623|0.016973192506554|6.2|151.0|12|3|sense REV__MSTB_dup6217|chr12:64633253-64633666:+|1.2443054555250623|0.016973192506554|6.2|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 585.793701171875 2 585.793121 1169.57169 NaN NaN NaN NaN NaN NaN NaN 55.166 1 58.476 57.976 58.976 3.3102 0 0 0 0.53105 1 12529 12529 1.6526 0 1 + 42673 31888 26989 27001 48946 48946 -0.00631479736239271 STTTAPMFVV 10 Unmodified _STTTAPMFVV_ 0 0 0 REV__Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|13|1|sense REV__Tigger1_dup3609|chr4:152480051-152482437:+|1.7024161561563107|0.1371420129853835|3.63|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 527.2654418945312 2 527.267893 1052.52123 NaN NaN NaN NaN NaN NaN NaN 75.713 1 78.97 78.47 79.47 3.2573 0 0 0 0.53105 1 18798 18798 19.257 2.1704 1 + 42674 32426 26990 27002 48947 48947 -0.002927253855887102 STTTIFSI 8 Unmodified _STTTIFSI_ 0 0 0 REV__ENST00000368321.7_1_1:155883945-155883987:-|nuORF REV__ENST00000368321.7_1_1:155883945-155883987:-|nuORF MSMS UPN48_class_I_Rep_1 5 435.24688720703125 2 435.234376 868.454199 NaN NaN NaN NaN NaN NaN NaN 99.89 1 103.5 103 104 3.6065 0 0 0 0.40625 1 24120 24120 2.3027 1.5091 1 + 42675 21942 26991 27003 48948 48948 0.014709873949527719 STTTKCGATIA 11 Unmodified _STTTKCGATIA_ 0 0 0 REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 527.2669677734375 2 527.265881 1052.51721 0.37181 0.00019604 0.57224 0.00030172 0.94405 0.00049776 527.2661167834352 81.639 0.48892 85.151 84.899 85.388 3.5122 83 53 2 0 0 0 0.3053 1 20331 20331 23.79 2.0431 1 247040 + 42676 21156 26992 27004 48949 48949 -0.006948148793071596 STTWLDVF 8 Unmodified _STTWLDVF_ 0 0 0 L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|93|2|anti-sense L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|93|2|anti-sense L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|93|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.7392883300781 2 484.739825 967.465098 NaN NaN NaN NaN NaN NaN NaN 84.668 1 84.668 84.168 85.168 0 0 0 0 0.40625 1 20157 20157 2.3027 0.24298 1 42677 14091 26993 27005 48950 48950 -0.01993610230761078 STVAALFHSV 10 Unmodified _STVAALFHSV_ 0 0 0 L1MB3_dup9126|chrX:19666627-19667341:+|1.3584996424881777|0.0046300175499707|8.2|151.0|47|2|anti-sense L1MB3_dup9126|chrX:19666627-19667341:+|1.3584996424881777|0.0046300175499707|8.2|151.0|47|2|anti-sense L1MB3_dup9126|chrX:19666627-19667341:+|1.3584996424881777|0.0046300175499707|8.2|151.0|47|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2799682617188 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 40.612 1 43.983 43.483 44.483 3.3712 0 0 0 0.53105 1 8105 8105 3.2813 0 1 42678 10471 26994 27006 48951 48951 0.030694564432451443 STVLYSINYG 10 Unmodified _STVLYSINYG_ 0 0 0 L1M4_dup612|chr1:112549415-112550356:-|1.142323167314287|0.0515957365849016|4.47|151.0|70|3|anti-sense L1M4_dup612|chr1:112549415-112550356:-|1.142323167314287|0.0515957365849016|4.47|151.0|70|3|anti-sense L1M4_dup612|chr1:112549415-112550356:-|1.142323167314287|0.0515957365849016|4.47|151.0|70|3|anti-sense MSMS UPN47_class_I_Rep_3 4 558.7702026367188 2 558.782222 1115.54989 NaN NaN NaN NaN NaN NaN NaN 45.736 1 48.98 48.48 49.48 3.2441 0 0 0 0.53105 1 9719 9719 9.3831 0 1 42679 8897 26995 27007 48952 48952 -0.0032628448482228123 STWEGPPPES 10 Unmodified _STWEGPPPES_ 0 0 0 nc|ENSG00000176302|Q6PIV2-2|FOXR1 nc|ENSG00000176302|Q6PIV2-2|FOXR1 nc|ENSG00000176302|Q6PIV2-2|FOXR1 MSMS UPN47_class_I_Rep_2 3 543.7432250976562 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 113.81 1 117.32 116.82 117.82 3.5109 0 0 0 0.53105 1 27692 27692 1.4819 0 1 42680 16759 26996 27008 48953 48953 -0.07276020932658867 STWRPMLVCY 10 Unmodified _STWRPMLVCY_ 0 0 0 ENST00000398965.5_2_4:128886686-128904108:+|nuORF ENST00000398965.5_2_4:128886686-128904108:+|nuORF ENST00000398965.5_2_4:128886686-128904108:+|nuORF MSMS UPN47_class_I_Rep_1 2 628.3016967773438 2 628.301744 1254.58893 NaN NaN NaN NaN NaN NaN NaN 61.047 1 64.428 63.928 64.928 3.3815 0 0 0 0.53105 1 14287 14287 2.9952 0 1 42681 6586 26997 27009 48954 48954 -0.02817598726437609 STWTYRQGYD 10 Unmodified _STWTYRQGYD_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000529186.1_1_11:44129577-44137613:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MSMS UPN46_class_I_Rep_3 1 638.7840576171875 2 638.783284 1275.55202 NaN NaN NaN NaN NaN NaN NaN 82.933 1 82.933 82.433 83.433 0 0 0 0 0.53105 1 19670 19670 3.5965 0 1 42682 3585 26998 27010 48955 48955 -0.07473855747002744 STWWLEPL 8 Unmodified _STWWLEPL_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|290|3|anti-sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|290|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.2631225585938 2 516.263468 1030.51238 -0.20326 -0.00010493 -0.16964 -8.7581E-05 -0.3729 -0.00019251 516.2633856966833 43.926 0.65893 47.283 46.953 47.611 3.358 43 33 2 0 0 0 0.82752 1 9084 9084 7.9102 0.3012 1 68886 + 42683 23629 26999 27011 48956 48956 -0.0016533095977138146 STWYHSADLKT 11 Unmodified _STWYHSADLKT_ 0 0 0 REV__L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|47|3|sense REV__L1PB4_dup591|chr2:68266787-68268769:+|1.3921953247619432|0.1048277584538986|3.73|151.0|47|3|sense MSMS UPN48_class_I_Rep_1 5 436.8796081542969 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 27.199 1 30.762 30.262 31.262 3.5629 0 0 0 0.38417 1 3466 3466 0.40827 0.13925 1 + 42684 30613 27000 27012 48957 48957 -0.026887096788186682 STYEKALGY 9 Unmodified _STYEKALGY_ 0 0 0 nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1 nc|ENSG00000176623|Q96DB5-3|RMDN1 nc|ENSG00000176623|Q96DB5-3|RMDN1 MULTI-SECPEP UPN48_class_I_Rep_2 6 515.8103637695312 2 516.25584 1030.49713 0.31353 0.00016186 -0.065553 -3.3842E-05 0.24798 0.00012802 516.2556612551934 37.263 0.10674 40.965 40.909 41.016 3.7021 20 11 3 0 0 0 0.12157 1 6357 6357 6.2058 0.97511 1 53456 42685 4766 27001 27013 48958 48958 -0.016902425476018834 STYPKSGTTWV 11 Unmodified _STYPKSGTTWV_ 0 0 0 ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000196502|ENST00000314752|SULT1A1 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 MULTI-MSMS UPN47_class_I_Rep_2 3 613.8054809570312 2 613.806228 1225.5979 0.42371 0.00026008 0.020593 1.264E-05 0.44431 0.00027272 613.8060568729467 63.088 0.87097 66.343 66.051 66.922 3.2558 110 61 3 0 0 0 0.32916 1 14943 14943 26.268 1.2772 1 216640 42686 5312 27002 27014 48959 48959 -0.005872105647540593 STYYGSFVTR 10 Unmodified _STYYGSFVTR_ 0 0 0 ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H ENST00000517974.1_1_8:117671049-117768052:-|nuORF ENST00000517974.1_1_8:117671049-117768052:-|nuORF MSMS UPN48_class_I_Rep_1 5 590.7860717773438 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.256 1 47.769 47.269 48.269 3.5132 0 0 0 0.53105 1 8402 8402 8.9762 3.6794 1 42687 3484 27003 27015 48960 48960 -0.02655766253269576 STYYGSFVTR 10 Unmodified _STYYGSFVTR_ 0 0 0 ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H ENST00000517974.1_1_8:117671049-117768052:-|nuORF ENST00000517974.1_1_8:117671049-117768052:-|nuORF MSMS UPN48_class_I_Rep_1 5 590.7845458984375 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.291 1 47.804 47.304 48.304 3.5132 0 0 0 0.53105 1 8413 8413 11.518 6.221 1 42688 3484 27003 27015 48961 48961 -0.02655766253269576 STYYGSFVTR 10 Unmodified _STYYGSFVTR_ 0 0 0 ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H ENST00000517974.1_1_8:117671049-117768052:-|nuORF ENST00000517974.1_1_8:117671049-117768052:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 590.78515625 2 590.785296 1179.55604 0.4061 0.00023992 0.33983 0.00020077 0.74594 0.00044069 590.7855474242458 43.982 0.53917 47.743 47.499 48.038 3.7617 60 40 2 0 0 0 0.36422 3 8336 8294;8336;8345 22.775 10.534 1 111020 42689 3484 27003 27015 48962;48963;48964 48963 -0.02655766253269576 STYYGSFVTR 10 Unmodified _STYYGSFVTR_ 0 0 0 ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H ENST00000517974.1_1_8:117671049-117768052:-|nuORF ENST00000517974.1_1_8:117671049-117768052:-|nuORF MSMS UPN48_class_I_Rep_3 7 590.78515625 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.122 1 47.761 47.261 48.261 3.6385 0 0 0 0.53105 1 8295 8295 5.7834 0.48655 1 42690 3484 27003 27015 48965 48965 -0.02655766253269576 STYYGSFVTR 10 Unmodified _STYYGSFVTR_ 0 0 0 ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H ENST00000517974.1_1_8:117671049-117768052:-|nuORF ENST00000517974.1_1_8:117671049-117768052:-|nuORF MSMS UPN48_class_I_Rep_3 7 590.7869873046875 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.382 1 48.019 47.519 48.519 3.6372 0 0 0 0.53105 1 8376 8376 6.6304 1.3335 1 42691 3484 27003 27015 48966 48966 -0.02655766253269576 SVAALPSAKL 10 Unmodified _SVAALPSAKL_ 0 0 0 REV__Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense REV__Tigger1_dup10923|chr17:61228412-61229553:+|2.00541663031849|0.0231326511285086|6.44|151.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 478.974365234375 2 478.792392 955.570232 0.14806 7.0888E-05 -0.096732 -4.6314E-05 0.051325 2.4574E-05 478.7921928652707 54.249 0.48586 57.763 57.528 58.014 3.5143 49 33 2 0 0 0 0.84575 1 11538 11538 11.495 1.4208 1 83566 + 42692 32344 27004 27016 48967 48967 0.09066930965661868 SVADIRNAY 9 Unmodified _SVADIRNAY_ 0 0 0 ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4 ENSG00000128815|ENST00000325239|WDFY4 ENSG00000128815|ENST00000325239|WDFY4 MSMS UPN46_class_I_Rep_3 1 504.8089599609375 2 504.759081 1007.50361 NaN NaN NaN NaN NaN NaN NaN 41.378 1 41.378 40.878 41.878 0 0 0 0 0.046227 1 8106 8106 38.176 22.328 1 42693 2602 27005 27017 48968 48968 0.00015695403749305115 SVAFNQLVF 9 Unmodified _SVAFNQLVF_ 0 0 0 L1M4a1_dup2508|chr22:29242852-29243317:-|1.0741435270986246|0.0099311999121135|6.76|146.0|24|2|anti-sense L1M4a1_dup2508|chr22:29242852-29243317:-|1.0741435270986246|0.0099311999121135|6.76|146.0|24|2|anti-sense L1M4a1_dup2508|chr22:29242852-29243317:-|1.0741435270986246|0.0099311999121135|6.76|146.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2789916992188 2 512.776742 1023.53893 0.32144 0.00016483 -0.35717 -0.00018315 -0.035734 -1.8324E-05 512.7763440722423 76.035 0.29217 79.637 79.542 79.834 3.6011 67 37 2 0 0 0 0.17897 1 17967 17967 22.736 0 1 116100 42694 8950 27006 27018 48969 48969 0.028103579315711613 SVAGLTAAAYR 11 Unmodified _SVAGLTAAAYR_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS UPN48_class_I_Rep_1 5 540.2944946289062 2 540.29583 1078.57711 0.39872 0.00021543 -0.49708 -0.00026857 -0.098366 -5.3147E-05 540.2956007500668 40.97 0.25547 44.476 44.345 44.601 3.506 37 24 2 0 0 0 0.25301 3 7433 7411;7429;7433 37.075 15.538 1 115270 42695 4697 27007 27019 48970;48971;48972 48972 0.040962438462202044 SVAGLTAAAYR 11 Unmodified _SVAGLTAAAYR_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MSMS UPN48_class_I_Rep_2 6 540.2954711914062 2 540.29583 1078.57711 NaN NaN NaN NaN NaN NaN NaN 40.617 1 44.358 43.858 44.858 3.7413 0 0 0 0.028739 1 7330 7330 30.703 11.341 1 42696 4697 27007 27019 48973 48973 0.040962438462202044 SVAGLTAAAYR 11 Unmodified _SVAGLTAAAYR_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MSMS UPN48_class_I_Rep_2 6 540.2969360351562 2 540.29583 1078.57711 NaN NaN NaN NaN NaN NaN NaN 40.662 1 44.403 43.903 44.903 3.7413 0 0 0 0.00034627 1 7343 7343 42.312 11.044 1 42697 4697 27007 27019 48974 48974 0.040962438462202044 SVAGLTAAAYR 11 Unmodified _SVAGLTAAAYR_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS UPN48_class_I_Rep_3 7 540.2957763671875 2 540.29583 1078.57711 0.45899 0.00024799 -0.18976 -0.00010252 0.26923 0.00014546 540.2956122941675 40.784 0.55473 44.435 44.261 44.816 3.6509 77 55 2 0 0 0 0.2744 2 7321 7278;7321 30.703 15.455 1 131560 42698 4697 27007 27019 48975;48976 48976 0.040962438462202044 SVAIKRKR 8 Unmodified _SVAIKRKR_ 0 0 0 ENST00000490365.1_1_10:76744849-76785012:+|nuORF;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B ENST00000490365.1_1_10:76744849-76785012:+|nuORF ENST00000490365.1_1_10:76744849-76785012:+|nuORF MSMS UPN48_class_I_Rep_1 5 479.3096008300781 2 479.319443 956.624333 NaN NaN NaN NaN NaN NaN NaN 54.747 1 58.255 57.755 58.755 3.5082 0 0 0 0.40625 1 11621 11621 2.3027 0.4585 1 42699 3737 27008 27020 48977 48977 0.14428567907884826 SVALATNRP 9 Unmodified _SVALATNRP_ 0 0 0 REV__L1P3_dup1936|chrX:6971724-6976664:-|1.2901113174854062|0.0542819256769481|4.57|151.0|201|2|anti-sense REV__L1P3_dup1936|chrX:6971724-6976664:-|1.2901113174854062|0.0542819256769481|4.57|151.0|201|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 464.7640380859375 2 464.764166 927.513779 -0.0078399 -3.6437E-06 -0.27548 -0.00012803 -0.28332 -0.00013168 464.76394448284026 31.163 0.96766 31.163 30.906 31.874 0 121 70 2 0 0 0 0.17897 1 5218 5218 22.736 2.3217 1 284220 + 42700 28881 27009 27021 48978 48978 0.047123031289856954 SVALLRHF 8 Unmodified _SVALLRHF_ 0 0 0 ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B MULTI-SECPEP UPN48_class_I_Rep_2 6 471.280029296875 2 471.779619 941.544686 0.2079 9.8081E-05 3.605 0.0017007 3.8128 0.0017988 471.78156915713663 83.179 0.072762 86.861 86.836 86.909 3.6814 12 9 2 0 0 0 0.72333 1 19770 19770 5.2307 0 1 96717 42701 3285 27010 27022 48979 48979 0.07157501233893981 SVALPGKRF 9 Unmodified _SVALPGKRF_ 0 0 0 REV__MER61B_dup414|chr21:14520583-14520971:+|1.1182135813435636|0.1227739577651658|3.19|151.0|17|1|anti-sense REV__MER61B_dup414|chr21:14520583-14520971:+|1.1182135813435636|0.1227739577651658|3.19|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.7795715332031 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 44.787 1 48.424 47.924 48.924 3.6372 0 0 0 0.36505 1 8501 8501 7.2892 0 1 + 42702 31512 27011 27023 48980 48980 0.08305770405377189 SVAWSPCTSSL 11 Unmodified _SVAWSPCTSSL_ 0 0 0 REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 569.2658081054688 2 569.265881 1136.51721 0.30662 0.00017455 0.08295 4.7221E-05 0.38957 0.00022177 569.2658652021141 46.544 0.64488 49.788 49.594 50.239 3.2439 53 42 2 0 0 0 0.50573 1 10008 10008 7.609 0.88579 1 77885 + 42703 22001 27012 27024 48981 48981 -0.04558814879305828 SVAWSPCTSSL 11 Unmodified _SVAWSPCTSSL_ 0 0 0 REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 569.265881 1136.51721 0.27581 0.00015701 -0.23275 -0.0001325 0.043056 2.4511E-05 569.2656883417296 46.464 0.50967 49.815 49.609 50.118 3.3515 0.013876 -0.00020828 NaN 7.609 56 36 2 NaN NaN NaN NaN 0 NaN NaN 0 88097 + 42704 22001 27012 27024 -0.04558814879305828 SVAWSPCTSSL 11 Unmodified _SVAWSPCTSSL_ 0 0 0 REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 569.265881 1136.51721 0.30662 0.00017455 0.08295 4.7221E-05 0.38957 0.00022177 569.2658652021141 46.544 0.64488 49.788 49.594 50.239 3.2439 -0.013876 0.00015116 NaN 7.609 53 42 2 NaN NaN NaN NaN 0 NaN NaN 0 77885 + 42705 22001 27012 27024 -0.04558814879305828 SVCIYEVFYH 10 Unmodified _SVCIYEVFYH_ 0 0 0 L1MC5_dup1013|chr2:26379708-26381015:-|2.0739121326654084|0.1563787198878591|3.73|150.0|49|3|sense L1MC5_dup1013|chr2:26379708-26381015:-|2.0739121326654084|0.1563787198878591|3.73|150.0|49|3|sense L1MC5_dup1013|chr2:26379708-26381015:-|2.0739121326654084|0.1563787198878591|3.73|150.0|49|3|sense MSMS UPN47_class_I_Rep_2 3 630.2916259765625 2 630.291899 1258.56925 NaN NaN NaN NaN NaN NaN NaN 13.212 1 16.6 16.1 17.1 3.388 0 0 0 0.53105 1 270 270 1.6526 0 1 42706 11649 27013 27025 48982 48982 -0.04969651465557945 SVCPALALASG 11 Unmodified _SVCPALALASG_ 0 0 0 REV__ENST00000558590.1_1_14:103395136-103395313:+|nuORF REV__ENST00000558590.1_1_14:103395136-103395313:+|nuORF MSMS UPN48_class_I_Rep_1 5 495.1835632324219 2 494.760235 987.505917 NaN NaN NaN NaN NaN NaN NaN 45.958 1 49.474 48.974 49.974 3.5162 0 0 0 0.38417 1 8920 8920 2.7352 0.15772 1 + 42707 21664 27014 27026 48983 48983 0.01166407817208892 SVDEVCYC 8 Unmodified _SVDEVCYC_ 0 0 0 REV__L1MB1_dup4657|chr13:21087569-21088712:+|2.173241783097431|0.0018076762982527|10.23|137.0|67|3|anti-sense REV__L1MB1_dup4657|chr13:21087569-21088712:+|2.173241783097431|0.0018076762982527|10.23|137.0|67|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.1717834472656 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 48.091 1 48.091 47.591 48.591 0 0 0 0 0.40604 1 9990 9990 2.5775 0 1 + 42708 25674 27015 27027 48984 48984 -0.1308575503933298 SVDPHGFISY 10 Unmodified _SVDPHGFISY_ 0 0 0 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50 MULTI-MSMS UPN47_class_I_Rep_1 2 561.2666015625 2 561.266739 1120.51892 0.31262 0.00017546 0.047152 2.6465E-05 0.35977 0.00020193 561.2665977958636 52.901 0.85094 56.459 56.157 57.008 3.5585 78 51 2 0 0 0 0.29514 3 11792 11740;11792;11859 34.402 9.0024 1 197500 42709 1720 27016 27028 48985;48986;48987 48986 -0.03651437799021551 SVDPHGFISY 10 Unmodified _SVDPHGFISY_ 0 0 0 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50 MULTI-MSMS UPN47_class_I_Rep_2 3 561.2664184570312 2 561.266739 1120.51892 0.51655 0.00028992 -0.20162 -0.00011316 0.31493 0.00017676 561.2664857738118 53.073 0.71059 56.4 56.198 56.908 3.3266 79 44 2 0 0 0 0.19978 2 11899 11854;11899 60.074 29.437 1 156450 42710 1720 27016 27028 48988;48989 48989 -0.03651437799021551 SVDPHGFISY 10 Unmodified _SVDPHGFISY_ 0 0 0 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50 nc|ENSG00000105197|Q3ZCQ8-3|TIMM50 MULTI-MSMS UPN47_class_I_Rep_3 4 561.2666015625 2 561.266739 1120.51892 0.48463 0.000272 0.058725 3.296E-05 0.54335 0.00030496 561.2666111066607 53.329 0.77629 56.524 56.187 56.963 3.1948 90 44 3 0 0 0 0.25511 3 12037 11963;11992;12037 38.176 20.029 1 180340 42711 1720 27016 27028 48990;48991;48992 48992 -0.03651437799021551 SVDSPEYNL 9 Unmodified _SVDSPEYNL_ 0 0 0 REV__L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|48|2|anti-sense REV__L1ME4b_dup17959|chr16:15002211-15003018:-|1.0861959993399335|0.1883079987039667|2.53|150.0|48|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.2348022460938 2 512.235104 1022.45566 0.19399 9.9367E-05 0.028884 1.4795E-05 0.22287 0.00011416 512.2350557552031 57.703 0.58962 60.994 60.753 61.343 3.2912 79 49 2 0 0 0 0.30034 1 13304 13304 13.906 0 1 164710 + 42712 28270 27017 27029 48993 48993 -0.05467423306959063 SVDSQILYY 9 Unmodified _SVDSQILYY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS UPN47_class_I_Rep_1 2 544.2691040039062 2 544.268947 1086.52334 0.428 0.00023295 -0.136 -7.4022E-05 0.29199 0.00015892 544.2687554308251 62.697 0.78913 66.056 65.725 66.514 3.3595 130 50 3 0 0 0 0.0060693 4 14799 14726;14759;14799;14838 82.529 34.781 1 577940 42713 1291 27018 27030 48994;48995;48996;48997 48996 -0.01645973376139409 SVDSQILYY 9 Unmodified _SVDSQILYY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS UPN47_class_I_Rep_2 3 544.26904296875 2 544.268947 1086.52334 0.396 0.00021553 -0.0032293 -1.7576E-06 0.39277 0.00021377 544.2688424322087 62.938 0.75442 66.194 65.852 66.607 3.2558 124 49 3 0 0 0 0.0054033 4 14933 14832;14849;14890;14933 86.332 36.399 1 681300 42714 1291 27018 27030 48998;48999;49000;49001 49001 -0.01645973376139409 SVDSQILYY 9 Unmodified _SVDSQILYY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS UPN47_class_I_Rep_3 4 544.26904296875 2 544.268947 1086.52334 0.39961 0.00021749 -0.18038 -9.8175E-05 0.21923 0.00011932 544.2687134284529 62.953 1.0147 66.123 65.743 66.758 3.1698 157 65 4 0 0 0 0.0060693 4 14936 14895;14936;14977;15018 86.332 36.399 1 641680 42715 1291 27018 27030 49002;49003;49004;49005 49003 -0.01645973376139409 SVDVEWYY 8 Unmodified _SVDVEWYY_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MSMS UPN46_class_I_Rep_3 1 530.7560424804688 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 18.85 1 18.85 18.35 19.35 0 0 0 0 0.40738 1 1707 1707 0.79363 0 1 + 42716 19004 27019 27031 49006 49006 -0.07242217955990782 SVDVEWYY 8 Unmodified _SVDVEWYY_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MSMS UPN47_class_I_Rep_1 2 530.7346801757812 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 24.123 1 27.852 27.352 28.352 3.7298 0 0 0 0.40738 1 3101 3101 0.79363 0 1 + 42717 19004 27019 27031 49007 49007 -0.07242217955990782 SVDVEWYY 8 Unmodified _SVDVEWYY_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MSMS UPN47_class_I_Rep_2 3 530.7348022460938 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 21.784 1 25.208 24.708 25.708 3.4241 0 0 0 0.40738 1 2485 2485 0.79363 0 1 + 42718 19004 27019 27031 49008 49008 -0.07242217955990782 SVDVEWYY 8 Unmodified _SVDVEWYY_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MSMS UPN47_class_I_Rep_3 4 530.7348022460938 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 21.162 1 24.511 24.011 25.011 3.3496 0 0 0 0.40738 1 2321 2321 0.79363 0 1 + 42719 19004 27019 27031 49009 49009 -0.07242217955990782 SVDVEWYY 8 Unmodified _SVDVEWYY_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MSMS UPN48_class_I_Rep_2 6 530.73486328125 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 30.046 1 33.681 33.181 34.181 3.6351 0 0 0 0.40738 1 4343 4343 0.79363 0 1 + 42720 19004 27019 27031 49010 49010 -0.07242217955990782 SVDWELYLDG 10 Unmodified _SVDWELYLDG_ 0 0 0 HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|26|1|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|26|1|sense HERVE-int_dup193|chr11:71886034-71890084:+|4.053378735632496|0.2270138383152982|4.16|151.0|26|1|sense MSMS UPN47_class_I_Rep_2 3 598.7765502929688 2 598.777136 1195.53972 NaN NaN NaN NaN NaN NaN NaN 40.883 1 44.248 43.748 44.748 3.3655 0 0 0 0.53105 1 8186 8186 1.4819 0 1 42721 8119 27020 27032 49011 49011 -0.050228922100586715 SVEEFYVAGL 10 Unmodified _SVEEFYVAGL_ 0 0 0 ENST00000335730.6_1_18:44089558-44181581:-|nuORF;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1 ENST00000335730.6_1_18:44089558-44181581:-|nuORF ENST00000335730.6_1_18:44089558-44181581:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 557.2769165039062 2 557.276772 1112.53899 0.39451 0.00021985 -0.13764 -7.6701E-05 0.25687 0.00014315 557.2766942104748 75.138 0.41611 75.138 75.001 75.417 0 69 39 2 0 0 0 0.51565 1 17512 17512 10.074 0 1 199930 42722 4292 27021 27033 49012 49012 -0.012776868590890444 SVEKSKVPQY 10 Unmodified _SVEKSKVPQY_ 0 0 0 REV__THE1C-int_dup1666|chr16:15962846-15963948:-|2.2883522282501296|0.012846588857205|7.48|151.0|56|3|anti-sense REV__THE1C-int_dup1666|chr16:15962846-15963948:-|2.2883522282501296|0.012846588857205|7.48|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_3 4 582.8159790039062 2 582.816596 1163.61864 NaN NaN NaN NaN NaN NaN NaN 65.095 1 68.274 67.774 68.774 3.1795 0 0 0 0.53105 1 15611 15611 2.9952 0.26005 1 + 42723 32286 27022 27034 49013 49013 0.043373798149104914 SVEPRSVQVL 10 Unmodified _SVEPRSVQVL_ 0 0 0 REV__nc|ENSG00000153130|Q9UIL1-4|SCOC REV__nc|ENSG00000153130|Q9UIL1-4|SCOC MSMS UPN47_class_I_Rep_1 2 557.258056640625 2 557.316763 1112.61897 NaN NaN NaN NaN NaN NaN NaN 70.082 1 73.453 72.953 73.953 3.3713 0 0 0 0.53105 1 17014 17014 1.6526 0 1 + 42724 32017 27023 27035 49014 49014 0.06716799534774509 SVFDLVIVS 9 Unmodified _SVFDLVIVS_ 0 0 0 REV__nc|ENSG00000080224|Q9UF33|EPHA6 REV__nc|ENSG00000080224|Q9UF33|EPHA6 MULTI-MSMS UPN47_class_I_Rep_1 2 490.2805480957031 2 489.778951 977.543348 0.13889 6.8027E-05 -0.2946 -0.00014429 -0.1557 -7.6261E-05 489.77893215971466 73.023 0.25113 76.403 76.299 76.55 3.3799 16 13 2 0 0 0 0.46869 1 17907 17907 3.9444 0 1 37574 + 42725 17903 27024 27036 49015 49015 0.05367822354469354 SVFEDLSVTLR 11 Unmodified _SVFEDLSVTLR_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS UPN48_class_I_Rep_1 5 633.341064453125 2 633.340435 1264.66632 0.48153 0.00030497 0.59669 0.00037791 1.0782 0.00068288 633.3409145372854 68.787 0.72124 72.242 71.961 72.682 3.4548 82 58 2 0 0 0 0.30774 4 15985 15860;15901;15944;15985 25.997 17.842 1 213920 42726 4942 27025 27037 49016;49017;49018;49019 49019 0.04457034015104 SVFEDLSVTLR 11 Unmodified _SVFEDLSVTLR_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS UPN48_class_I_Rep_2 6 633.3413696289062 2 633.340435 1264.66632 0.50195 0.0003179 0.73029 0.00046252 1.2322 0.00078043 633.3409021579438 68.635 0.77487 72.143 71.828 72.603 3.5083 114 62 3 0 0 0 0.19964 2 15803 15803;15845 39.923 26.308 1 241380 42727 4942 27025 27037 49020;49021 49020 0.04457034015104 SVFEDLSVTLR 11 Unmodified _SVFEDLSVTLR_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS UPN48_class_I_Rep_3 7 633.34130859375 2 633.340435 1264.66632 0.67871 0.00042985 0.39644 0.00025108 1.0751 0.00068093 633.340687091797 68.573 0.69917 72.083 71.794 72.494 3.5093 98 55 3 0 0 0 0.26298 2 15740 15740;15777 19.144 12.514 1 275700 42728 4942 27025 27037 49022;49023 49022 0.04457034015104 SVFESLIAKK 10 Unmodified _SVFESLIAKK_ 0 0 0 ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE MSMS UPN48_class_I_Rep_3 7 561.331298828125 2 561.331882 1120.64921 NaN NaN NaN NaN NaN NaN NaN 47.665 1 51.299 50.799 51.799 3.6339 0 0 0 0.53105 1 9376 9376 2.4985 0.65425 1 42729 2104 27026 27038 49024 49024 0.09371158199928686 SVFFMLMRCY 10 Unmodified _SVFFMLMRCY_ 0 0 0 MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|21|3|sense MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|21|3|sense MER21B_dup475|chr3:15775291-15776138:-|5.626832070338851|0.0092252180548605|9.25|151.0|21|3|sense MSMS UPN48_class_I_Rep_3 7 648.8002319335938 2 648.800523 1295.58649 NaN NaN NaN NaN NaN NaN NaN 33.076 1 36.765 36.265 37.265 3.6896 0 0 0 0.53105 1 5097 5097 1.4819 0.28856 1 42730 15874 27027 27039 49025 49025 -0.049477704557375546 SVFIAISSYL 10 Unmodified _SVFIAISSYL_ 0 0 0 L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|87|2|anti-sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|87|2|anti-sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 551.3215942382812 2 550.305332 1098.59611 0.41334 0.00022746 -0.055491 -3.0537E-05 0.35785 0.00019693 550.3050705011975 109.23 0.29592 112.91 112.81 113.1 3.6751 102 41 4 0 0 0 0.55983 1 25916 25916 3.9444 0 1 8663700 42731 9038 27028 27040 49026 49026 0.05075780417269016 SVFNVIKP 8 Unmodified _SVFNVIKP_ 0 0 0 REV__nc|ENSG00000077238|P24394-3|IL4R REV__nc|ENSG00000077238|P24394-3|IL4R MSMS UPN46_class_I_Rep_3 1 452.26922607421875 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 34.095 1 34.095 33.595 34.595 0 0 0 0 0.40404 1 6045 6045 5.2307 0 1 + 42732 17876 27029 27041 49027 49027 0.06739276765472368 SVFTVCPCLY 10 Unmodified _SVFTVCPCLY_ 0 0 0 L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_1 5 566.2640991210938 2 566.264296 1130.51404 NaN NaN NaN NaN NaN NaN NaN 66.33 1 69.782 69.282 70.282 3.4516 0 0 0 0.53105 1 15160 15160 9.3831 0 1 42733 9704 27030 27042 49028 49028 -0.045997812576615615 SVFTVCPCLY 10 Unmodified _SVFTVCPCLY_ 0 0 0 L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_3 7 566.2643432617188 2 566.264296 1130.51404 NaN NaN NaN NaN NaN NaN NaN 66.08 1 69.587 69.087 70.087 3.5077 0 0 0 0.53105 1 14983 14983 13.906 1.3745 1 42734 9704 27030 27042 49029 49029 -0.045997812576615615 SVFTVCPCLY 10 Unmodified _SVFTVCPCLY_ 0 0 0 L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_3 7 566.26416015625 2 566.264296 1130.51404 NaN NaN NaN NaN NaN NaN NaN 66.242 1 69.75 69.25 70.25 3.5077 0 0 0 0.53105 1 15031 15031 13.906 1.3745 1 42735 9704 27030 27042 49030 49030 -0.045997812576615615 SVFTVCPCLY 10 Unmodified _SVFTVCPCLY_ 0 0 0 L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense L1MA4_dup581|chr1:212367108-212368750:+|1.9973289581414035|0.0787245500096582|4.67|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_3 7 566.2637939453125 2 566.264296 1130.51404 NaN NaN NaN NaN NaN NaN NaN 66.276 1 69.784 69.284 70.284 3.5077 0 0 0 0.53105 1 15041 15041 13.906 1.3745 1 42736 9704 27030 27042 49031 49031 -0.045997812576615615 SVGAEIFV 8 Unmodified _SVGAEIFV_ 0 0 0 ENST00000472200.1_1_3:136538525-136538843:+|nuORF ENST00000472200.1_1_3:136538525-136538843:+|nuORF ENST00000472200.1_1_3:136538525-136538843:+|nuORF MSMS UPN48_class_I_Rep_1 5 411.2288513183594 2 411.223811 820.433069 NaN NaN NaN NaN NaN NaN NaN 107.61 1 111.24 110.74 111.74 3.6313 0 0 0 0.39996 1 25946 25946 7.9102 2.6795 1 42737 6930 27031 27043 49032 49032 0.01567022086101133 SVGFWVPPLL 10 Unmodified _SVGFWVPPLL_ 0 0 0 REV__L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|135|3|anti-sense REV__L1PA12_dup1634|chr19:27820751-27823212:-|1.1697334675244313|0.2524505980131896|2.21|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_2 6 558.271240234375 2 557.81841 1113.62227 NaN NaN NaN NaN NaN NaN NaN 60.37 1 63.849 63.349 64.349 3.4785 0 0 0 0.53105 1 13326 13326 3.5965 0 1 + 42738 29060 27032 27044 49033 49033 0.07000094379418442 SVGQTLLFGV 10 Unmodified _SVGQTLLFGV_ 0 0 0 REV__chr1:71698139-71706036|67|33.15|0.01|11.71|-|2|TE_info:L1M1,L1M1_dup115,L1,LINE,donor,+,71706036,71706936|NEGR1,None|4 REV__chr1:71698139-71706036|67|33.15|0.01|11.71|-|2|TE_info:L1M1,L1M1_dup115,L1,LINE,donor,+,71706036,71706936|NEGR1,None|4 MULTI-MSMS UPN47_class_I_Rep_1 2 510.7897033691406 2 510.78985 1019.56515 0.21737 0.00011103 0.027235 1.3911E-05 0.2446 0.00012494 510.7897546533304 56.352 0.59808 59.809 59.503 60.101 3.4572 76 31 3 0 0 0 0.53004 1 12842 12842 8.1555 1.4324 1 276820 + 42739 17420 27033 27045 49034 49034 0.05614627103057046 SVGQTLLFGV 10 Unmodified _SVGQTLLFGV_ 0 0 0 REV__chr1:71698139-71706036|67|33.15|0.01|11.71|-|2|TE_info:L1M1,L1M1_dup115,L1,LINE,donor,+,71706036,71706936|NEGR1,None|4 REV__chr1:71698139-71706036|67|33.15|0.01|11.71|-|2|TE_info:L1M1,L1M1_dup115,L1,LINE,donor,+,71706036,71706936|NEGR1,None|4 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7897033691406 2 510.78985 1019.56515 0.2057 0.00010507 -0.24618 -0.00012575 -0.040486 -2.068E-05 510.78972713400367 56.721 0.73896 60.022 59.6 60.339 3.3009 88 55 2 0 0 0 0.52083 1 13005 13005 9.3831 2.66 1 232510 + 42740 17420 27033 27045 49035 49035 0.05614627103057046 SVGYIEEYP 9 Unmodified _SVGYIEEYP_ 0 0 0 REV__ENSG00000165863|ENST00000588184|C10orf82 REV__ENSG00000165863|ENST00000588184|C10orf82 MULTI-MSMS UPN47_class_I_Rep_1 2 528.7482299804688 2 528.747847 1055.48114 0.36589 0.00019346 0.482 0.00025486 0.84789 0.00044832 528.7481345536712 79.078 1.0914 82.524 82.137 83.229 3.4456 192 102 3 0 0 0 0.46869 1 19859 19859 3.9444 3.9444 1 241630 + 42741 20140 27034 27046 49036 49036 -0.044379487844935284 SVHFLFDSY 9 Unmodified _SVHFLFDSY_ 0 0 0 REV__L1M4a2_dup2001|chr20:63926128-63926477:-|1.1024060273133989|0.162830957196615|2.76|151.0|21|2|anti-sense REV__L1M4a2_dup2001|chr20:63926128-63926477:-|1.1024060273133989|0.162830957196615|2.76|151.0|21|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.7633056640625 2 557.763832 1113.51311 -0.19877 -0.00011087 -0.0181 -1.0096E-05 -0.21687 -0.00012096 557.7636272721269 29.196 0.41799 32.519 32.347 32.765 3.3235 48 34 2 0 0 0 0.46869 1 4655 4655 3.9444 0.66309 1 50002 + 42742 24511 27035 27047 49037 49037 -0.03910536310718271 SVHFLFDSY 9 Unmodified _SVHFLFDSY_ 0 0 0 REV__L1M4a2_dup2001|chr20:63926128-63926477:-|1.1024060273133989|0.162830957196615|2.76|151.0|21|2|anti-sense REV__L1M4a2_dup2001|chr20:63926128-63926477:-|1.1024060273133989|0.162830957196615|2.76|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 557.7648315429688 2 557.763832 1113.51311 NaN NaN NaN NaN NaN NaN NaN 32.285 1 35.571 35.071 36.071 3.2867 0 0 0 0.39518 1 5613 5613 1.8442 0 1 + 42743 24511 27035 27047 49038 49038 -0.03910536310718271 SVHMIIVDPY 10 Unmodified _SVHMIIVDPY_ 0 0 0 REV__L1MA3_dup2989|chr5:70820663-70821463:-|3.262923346604402|0.0409857086715694|6.31|149.0|13|1|sense REV__L1MA3_dup2989|chr5:70820663-70821463:-|3.262923346604402|0.0409857086715694|6.31|149.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 586.9697875976562 2 587.302267 1172.58998 NaN NaN NaN NaN NaN NaN NaN 50.105 1 50.105 49.605 50.605 0 0 0 0 0.53105 1 10572 10572 3.5965 0 1 + 42744 25009 27036 27048 49039 49039 0.0105893891411597 SVHQGYWTE 9 Unmodified _SVHQGYWTE_ 0 0 0 L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|284|2|anti-sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|284|2|anti-sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|284|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.74853515625 2 553.748713 1105.48287 -0.091169 -5.0484E-05 -0.12985 -7.1902E-05 -0.22101 -0.00012239 553.74859517386 36.438 0.75006 39.693 39.406 40.156 3.2547 74 49 2 0 0 0 0.47493 1 6922 6922 3.2813 0 1 108880 42745 14757 27037 27049 49040 49040 -0.06564894975917923 SVHQPGSHY 9 Unmodified _SVHQPGSHY_ 0 0 0 ENSG00000119878|ENST00000238892|CRIPT;ENST00000486447.1_1_2:46844062-46851363:+|nuORF ENSG00000119878|ENST00000238892|CRIPT ENSG00000119878|ENST00000238892|CRIPT MULTI-MSMS UPN46_class_I_Rep_3 1 506.2341613769531 2 506.235773 1010.45699 -0.25883 -0.00013103 -0.89249 -0.00045181 -1.1513 -0.00058284 506.2350803113446 15.722 0.50372 15.722 15.571 16.074 0 85 61 2 0 0 0 0.42249 1 969 969 6.7232 1.9672 1 40192 42746 2302 27038 27050 49041 49041 -0.04781744427521062 SVICINQKK 9 Unmodified _SVICINQKK_ 0 0 0 REV__L1MD3_dup450|chr2:26268174-26268864:+|1.2874427724260102|0.0869505448656716|3.89|151.0|13|2|sense REV__L1MD3_dup450|chr2:26268174-26268864:+|1.2874427724260102|0.0869505448656716|3.89|151.0|13|2|sense MSMS UPN47_class_I_Rep_2 3 516.8146362304688 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 25.419 1 28.901 28.401 29.401 3.483 0 0 0 0.39518 1 3525 3525 1.8442 0.19162 1 + 42747 27485 27039 27051 49042 49042 0.06522375979534445 SVIDFRQL 8 Unmodified _SVIDFRQL_ 0 0 0 L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|63|3|anti-sense L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|63|3|anti-sense L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_2 6 489.2739562988281 2 489.274367 976.53418 NaN NaN NaN NaN NaN NaN NaN 47.537 1 51.273 50.773 51.773 3.7361 0 0 0 0.40157 1 9399 9399 7.2892 0 1 42748 9847 27040 27052 49043 49043 0.04497473788796924 SVIDYTYLE 9 Unmodified _SVIDYTYLE_ 0 0 0 L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|85|3|anti-sense L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|85|3|anti-sense L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 551.7694702148438 2 551.76878 1101.52301 NaN NaN NaN NaN NaN NaN NaN 79.905 1 83.37 82.87 83.87 3.465 0 0 0 0.38478 1 19920 19920 4.3292 0 1 42749 12725 27041 27053 49044 49044 -0.023693930960007492 SVIEQILHY 9 Unmodified _SVIEQILHY_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;ENSG00000009335.18,UBE3C,chr7,+,I11.1,157187022,157188948|32|9.19|4|intron;nc|ENSG00000009335|Q15386-3|UBE3C;ENSG00000009335.18,UBE3C,chr7,+,I11.1,157187022,157188948|32|9.19|3|intron;ENSG00000009335.18,UBE3C,chr7,+,I11.1,157187022,157188948|32|9.19|2|intron;nc|ENSG00000009335|Q15386-2|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MSMS UPN48_class_I_Rep_1 5 551.3014526367188 2 551.300581 1100.58661 NaN NaN NaN NaN NaN NaN NaN 69.615 1 73.07 72.57 73.57 3.4548 0 0 0 0.32573 1 16163 16163 9.3831 0.035688 1 42750 746 27042 27054 49045 49045 0.04034012131774034 SVIEQLAQV 9 Unmodified _SVIEQLAQV_ 0 0 0 ENSG00000136250.12,AOAH,chr7,-,I23.1,36522116,36530417|69|15.55|1|intron;ENSG00000136250.12,AOAH,chr7,-,I24.1,36514677,36522038|63|14.6|1|intron;ENSG00000136250|ENST00000617537|AOAH ENSG00000136250.12,AOAH,chr7,-,I23.1,36522116,36530417|69|15.55|1|intron ENSG00000136250.12,AOAH,chr7,-,I23.1,36522116,36530417|69|15.55|1|intron MSMS UPN47_class_I_Rep_3 4 493.780029296875 2 493.779482 985.544411 NaN NaN NaN NaN NaN NaN NaN 66.762 1 69.947 69.447 70.447 3.1853 0 0 0 0.16861 1 16123 16123 18.373 6.1324 1 42751 2960 27043 27055 49046 49046 0.05106036723384477 SVIGLTVLQ 9 Unmodified _SVIGLTVLQ_ 0 0 0 L1MB8_dup7804|chr9:19365064-19366319:+|1.1297047495716537|0.3089219928970423|1.87|151.0|45|3|sense L1MB8_dup7804|chr9:19365064-19366319:+|1.1297047495716537|0.3089219928970423|1.87|151.0|45|3|sense L1MB8_dup7804|chr9:19365064-19366319:+|1.1297047495716537|0.3089219928970423|1.87|151.0|45|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 465.2865295410156 2 465.286943 928.559333 0.17773 8.2696E-05 -0.5742 -0.00026717 -0.39647 -0.00018447 465.2866151771936 88.256 0.12225 91.912 91.899 92.021 3.6563 24 15 2 0 0 0 0.43153 1 22073 22073 6.2058 0 1 379200 42752 11033 27044 27056 49047 49047 0.09219528591370363 SVIGNKMY 8 Unmodified _SVIGNKMY_ 0 0 0 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 MSMS UPN48_class_I_Rep_1 5 456.2344970703125 2 456.236396 910.458238 NaN NaN NaN NaN NaN NaN NaN 35.139 1 38.653 38.153 39.153 3.5144 0 0 0 0.40604 1 5710 5710 2.5775 0 1 42753 1986 27045 27057 49048 49048 -0.0005724638299398066 SVILLMVFM 9 Unmodified _SVILLMVFM_ 0 0 0 REV__nc|ENSG00000183454|Q12879-2|GRIN2A REV__nc|ENSG00000183454|Q12879-2|GRIN2A MSMS UPN48_class_I_Rep_2 6 526.797607421875 2 526.797774 1051.581 NaN NaN NaN NaN NaN NaN NaN 19.546 1 23.196 22.696 23.696 3.6497 0 0 0 0.39326 1 1511 1511 2.3027 0.4585 1 + 42754 20787 27046 27058 49049 49049 0.05726874024094286 SVILLMVFM 9 Unmodified _SVILLMVFM_ 0 0 0 REV__nc|ENSG00000183454|Q12879-2|GRIN2A REV__nc|ENSG00000183454|Q12879-2|GRIN2A MSMS UPN48_class_I_Rep_2 6 526.7976684570312 2 526.797774 1051.581 NaN NaN NaN NaN NaN NaN NaN 21.039 1 24.687 24.187 25.187 3.648 0 0 0 0.39326 1 1916 1916 2.3027 0 1 + 42755 20787 27046 27058 49050 49050 0.05726874024094286 SVILLMVFM 9 Unmodified _SVILLMVFM_ 0 0 0 REV__nc|ENSG00000183454|Q12879-2|GRIN2A REV__nc|ENSG00000183454|Q12879-2|GRIN2A MSMS UPN48_class_I_Rep_3 7 526.77783203125 2 526.797774 1051.581 NaN NaN NaN NaN NaN NaN NaN 19.69 1 23.311 22.811 23.811 3.6215 0 0 0 0.39326 1 1536 1536 2.3027 0 1 + 42756 20787 27046 27058 49051 49051 0.05726874024094286 SVINPGAIYR 10 Unmodified _SVINPGAIYR_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS UPN48_class_I_Rep_1 5 545.3060913085938 2 545.306198 1088.59784 0.42202 0.00023013 -0.15415 -8.4058E-05 0.26787 0.00014607 545.3060741281578 46.962 0.71445 50.481 50.116 50.831 3.5192 74 45 2 0 0 0 0.28952 4 9164 9164;9210;9252;9308 34.932 14.592 1 268360 42757 2113 27047 27059 49052;49053;49054;49055 49052 0.057088342259021374 SVINPGAIYR 10 Unmodified _SVINPGAIYR_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS UPN48_class_I_Rep_2 6 545.3060913085938 2 545.306198 1088.59784 0.39166 0.00021358 -0.042052 -2.2931E-05 0.34961 0.00019065 545.3061324226405 46.65 0.71016 50.399 50.003 50.713 3.7494 81 45 2 0 0 0 0.22704 4 9117 9075;9117;9162;9222 57.249 27.409 1 265280 42758 2113 27047 27059 49056;49057;49058;49059 49057 0.057088342259021374 SVINPGAIYR 10 Unmodified _SVINPGAIYR_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS UPN48_class_I_Rep_3 7 545.3065795898438 2 545.306198 1088.59784 0.40192 0.00021917 0.11241 6.1295E-05 0.51432 0.00028046 545.3060742593021 46.858 0.65533 50.494 50.16 50.815 3.6363 81 41 3 0 0 0 0.21352 3 9089 9089;9130;9178 51.415 25.147 1 285320 42759 2113 27047 27059 49060;49061;49062 49060 0.057088342259021374 SVIRNELYV 9 Unmodified _SVIRNELYV_ 0 0 0 REV__L1PA5_dup9118|chr13:31632440-31638541:-|2.3389987857222745|0.0489343491214447|5.58|150.0|95|2|sense REV__L1PA5_dup9118|chr13:31632440-31638541:-|2.3389987857222745|0.0489343491214447|5.58|150.0|95|2|sense MSMS UPN47_class_I_Rep_2 3 546.806640625 2 546.806031 1091.59751 NaN NaN NaN NaN NaN NaN NaN 54.836 1 58.154 57.654 58.654 3.3187 0 0 0 0.3377 1 12429 12429 8.7454 1.4562 1 + 42760 29819 27048 27060 49063 49063 0.05537414506034111 SVIRVRNRK 9 Unmodified _SVIRVRNRK_ 0 0 0 HERVH-int_dup53|chr1:37910895-37911925:+|1.4890657899047297|0.0320033847564581|5.54|151.0|34|1|anti-sense;HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|112|2|anti-sense HERVH-int_dup53|chr1:37910895-37911925:+|1.4890657899047297|0.0320033847564581|5.54|151.0|34|1|anti-sense HERVH-int_dup53|chr1:37910895-37911925:+|1.4890657899047297|0.0320033847564581|5.54|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.359130859375 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 64.703 1 68.211 67.711 68.711 3.5083 0 0 0 0.4007 1 14564 14564 0.52476 0 1 42761 8151 27049 27061 49064 49064 0.14642429230934795 SVITLLLKN 9 Unmodified _SVITLLLKN_ 0 0 0 REV__L1MA3_dup985|chr2:143328738-143328987:+|2.133765820734171|0.0370140224041725|5.85|151.0|14|1|anti-sense REV__L1MA3_dup985|chr2:143328738-143328987:+|2.133765820734171|0.0370140224041725|5.85|151.0|14|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 500.82305908203125 2 500.823692 999.632832 0.19986 0.0001001 -0.19393 -9.7125E-05 0.0059347 2.9722E-06 500.82355496544477 44.066 0.82202 47.579 47.324 48.146 3.5132 86 59 2 0 0 0 0.21527 2 8344 8344;8472 19.257 1.1106 1 130570 + 42762 25134 27050 27062 49065;49066 49065 0.13300077033841262 SVITLLLKN 9 Unmodified _SVITLLLKN_ 0 0 0 REV__L1MA3_dup985|chr2:143328738-143328987:+|2.133765820734171|0.0370140224041725|5.85|151.0|14|1|anti-sense REV__L1MA3_dup985|chr2:143328738-143328987:+|2.133765820734171|0.0370140224041725|5.85|151.0|14|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 500.82501220703125 2 500.823692 999.632832 0.17843 8.9363E-05 -0.1221 -6.1149E-05 0.056336 2.8215E-05 500.82357967383047 43.991 0.79559 47.63 47.25 48.046 3.6385 94 50 2 0 0 0 0.30034 2 8299 8299;8347 13.906 0.86358 1 128000 + 42763 25134 27050 27062 49067;49068 49067 0.13300077033841262 SVITQVFHV 9 Unmodified _SVITQVFHV_ 0 0 0 HDLBP|p.A278Lfs*25|1|0.06|ENSG00000115677|chr2:241256225-241256225|C/-|frameshift_variant;nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP HDLBP|p.A278Lfs*25|1|0.06|ENSG00000115677|chr2:241256225-241256225|C/-|frameshift_variant HDLBP|p.A278Lfs*25|1|0.06|ENSG00000115677|chr2:241256225-241256225|C/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 515.290771484375 2 515.290017 1028.56548 NaN NaN NaN NaN NaN NaN NaN 64.718 1 68.073 67.573 68.573 3.3557 0 0 0 0.32573 1 15393 15393 9.3831 2.66 1 42764 2136 27051 27063 49069 49069 0.05234046822897653 SVKALGSSLYP 11 Unmodified _SVKALGSSLYP_ 0 0 0 HAL1_dup13855|chrX:111702307-111703185:-|3.897904002713612|0.2467380886023455|3.98|151.0|49|2|anti-sense HAL1_dup13855|chrX:111702307-111703185:-|3.897904002713612|0.2467380886023455|3.98|151.0|49|2|anti-sense HAL1_dup13855|chrX:111702307-111703185:-|3.897904002713612|0.2467380886023455|3.98|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_2 6 561.3120727539062 2 561.313689 1120.61282 NaN NaN NaN NaN NaN NaN NaN 60.065 1 63.552 63.052 64.052 3.4868 0 0 0 0.38417 1 13231 13231 5.2969 1.3525 1 42765 7799 27052 27064 49070 49070 0.05734281303261923 SVKEISDIVQR 11 Unmodified _SVKEISDIVQR_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1;BCR-ABL1|2|fusion;BCR-ABL1|1|fusion ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MSMS UPN46_class_I_Rep_3 1 637.3603515625 2 637.359159 1272.70376 NaN NaN NaN NaN NaN NaN NaN 43.134 1 43.134 42.634 43.634 0 0 0 0 0.06763 1 8586 8586 25.997 16.453 1 42766 412 27053 27065 49071 49071 0.07832125280674518 SVKFLTKIVG 10 Unmodified _SVKFLTKIVG_ 0 0 0 REV__Charlie1a_dup4221|chr12:62346072-62346541:-|1.2824374332294577|0.034363933036494|5.22|151.0|11|3|sense REV__Charlie1a_dup4221|chr12:62346072-62346541:-|1.2824374332294577|0.034363933036494|5.22|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 546.344482421875 2 546.344792 1090.67503 NaN NaN NaN NaN NaN NaN NaN 27.924 1 31.555 31.055 32.055 3.6311 0 0 0 0.53105 1 3774 3774 0 0 1 + 42767 17327 27054 27066 49072 49072 0.1333205244218334 SVKGDKEQKLR 11 Unmodified _SVKGDKEQKLR_ 0 0 0 ENSG00000221823|ENST00000234310|PPP3R1 ENSG00000221823|ENST00000234310|PPP3R1 ENSG00000221823|ENST00000234310|PPP3R1 MULTI-MSMS UPN46_class_I_Rep_3 1 644.873046875 2 644.372601 1286.73065 0.14865 9.5787E-05 0.33022 0.00021279 0.47887 0.00030857 644.3729254734691 12.96 0.12002 12.96 12.921 13.041 0 12 8 2 0 0 0 0.64617 1 274 274 3.5871 0.85186 1 22515 42768 5643 27055 27067 49073 49073 0.0987523389189846 SVKKNLLY 8 Unmodified _SVKKNLLY_ 0 0 0 L1M5_dup46624|chr16:29123434-29124521:-|2.7532201652297763|0.4329427295217096|2.67|151.0|35|3|sense L1M5_dup46624|chr16:29123434-29124521:-|2.7532201652297763|0.4329427295217096|2.67|151.0|35|3|sense L1M5_dup46624|chr16:29123434-29124521:-|2.7532201652297763|0.4329427295217096|2.67|151.0|35|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7955017089844 2 482.794935 963.575317 -0.068312 -3.2981E-05 1.3348 0.00064444 1.2665 0.00061146 482.79537938006604 26.334 0.12632 26.334 26.236 26.362 0 19 12 2 0 0 0 0.82752 1 3754 3754 2.3027 0 1 83792 42769 9178 27056 27068 49074 49074 0.09207234828272703 SVKKPQGSSK 10 Unmodified _SVKKPQGSSK_ 0 0 0 L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|6|1|sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|6|1|sense L1P2_dup957|chrX:64934545-64940025:+|1.5808150021451457|0.0682505008227624|4.53|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 524.0123901367188 2 523.303655 1044.59276 0.46175 0.00024164 -0.42709 -0.0002235 0.034655 1.8135E-05 523.3033120640486 77.491 0.93759 81.092 80.53 81.468 3.6016 149 81 2 0 0 0 0.56374 1 18354 18354 1.1933 0 1 216330 42770 13516 27057 27069 49075 49075 0.07224530363282611 SVKLSFVWIF 10 Unmodified _SVKLSFVWIF_ 0 0 0 REV__ENST00000475815.5_1_2:36783274-36783475:-|nuORF REV__ENST00000475815.5_1_2:36783274-36783475:-|nuORF MSMS UPN48_class_I_Rep_3 7 613.35205078125 2 613.352617 1224.69068 NaN NaN NaN NaN NaN NaN NaN 78.443 1 82.065 81.565 82.565 3.6216 0 0 0 0.53105 1 18569 18569 3.5965 0 1 + 42771 22536 27058 27070 49076 49076 0.08732338959271146 SVKLWLWE 8 Unmodified _SVKLWLWE_ 0 0 0 REV__MLT1F1_dup2417|chr13:99329399-99329943:+|1.3273621556361408|0.0324011773695738|5.36|151.0|29|2|anti-sense REV__MLT1F1_dup2417|chr13:99329399-99329943:+|1.3273621556361408|0.0324011773695738|5.36|151.0|29|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7924194335938 2 530.794935 1059.57532 NaN NaN NaN NaN NaN NaN NaN 39.111 1 42.841 42.341 43.341 3.7297 0 0 0 0.40643 1 6901 6901 2.0598 0 1 + 42772 31714 27059 27071 49077 49077 0.04791234828257984 SVKLWLWE 8 Unmodified _SVKLWLWE_ 0 0 0 REV__MLT1F1_dup2417|chr13:99329399-99329943:+|1.3273621556361408|0.0324011773695738|5.36|151.0|29|2|anti-sense REV__MLT1F1_dup2417|chr13:99329399-99329943:+|1.3273621556361408|0.0324011773695738|5.36|151.0|29|2|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7926025390625 2 530.794935 1059.57532 NaN NaN NaN NaN NaN NaN NaN 39.789 1 43.444 42.944 43.944 3.6557 0 0 0 0.40643 1 6999 6999 2.0598 0 1 + 42773 31714 27059 27071 49078 49078 0.04791234828257984 SVKNDHSAY 9 Unmodified _SVKNDHSAY_ 0 0 0 ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;ENST00000518511.1_1_5:156727833-156729928:+|nuORF ENSG00000055163|ENST00000620254|CYFIP2 ENSG00000055163|ENST00000620254|CYFIP2 MULTI-MSMS UPN46_class_I_Rep_3 1 510.7403564453125 2 510.740888 1019.46722 -0.28619 -0.00014617 -0.56262 -0.00028735 -0.8488 -0.00043352 510.7406424645673 13.743 0.17139 13.743 13.671 13.843 0 27 18 2 0 0 0 0.31407 1 455 455 13.042 13.042 1 43844 42774 940 27060 27072 49079 49079 -0.04173181492956246 SVKNGPGSSR 10 Unmodified _SVKNGPGSSR_ 0 0 0 ENST00000305928.5_7:74945214-74945265:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5;nc|ENSG00000078319|A4D2B8|PMS2P1 ENST00000305928.5_7:74945214-74945265:-|nuORF ENST00000305928.5_7:74945214-74945265:-|nuORF MSMS UPN46_class_I_Rep_3 1 494.7624206542969 2 494.762155 987.509757 NaN NaN NaN NaN NaN NaN NaN 12.418 1 12.418 11.918 12.918 0 0 0 0 0.53105 1 109 109 4.1895 1.1943 1 42775 6090 27061 27073 49080 49080 0.015502136352893103 SVKPASSSF 9 Unmodified _SVKPASSSF_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L nc|ENSG00000001497|Q9Y4W2-2|LAS1L MULTI-MSMS UPN46_class_I_Rep_3 1 455.2373352050781 2 455.23745 908.460347 -0.07886 -3.59E-05 -0.16573 -7.5445E-05 -0.24459 -0.00011135 455.2372740559545 29.173 1.106 29.173 28.803 29.909 0 195 94 3 0 0 0 0.013215 4 4588 4514;4550;4588;4627 67.838 17.327 1 336340 42776 667 27062 27074 49081;49082;49083;49084 49083 0.0024550562648073537 SVKRNQPL 8 Unmodified _SVKRNQPL_ 0 0 0 REV__nc|ENSG00000125968|P41134-2|ID1 REV__nc|ENSG00000125968|P41134-2|ID1 MSMS UPN47_class_I_Rep_2 3 471.28155517578125 2 471.279983 940.545414 NaN NaN NaN NaN NaN NaN NaN 32.824 1 36.279 35.779 36.779 3.4547 0 0 0 0.40604 1 5737 5737 2.5775 0 1 + 42777 18851 27063 27075 49085 49085 0.0727629588294576 SVLADAPLPA 10 Unmodified _SVLADAPLPA_ 0 0 0 REV__ENSG00000141744|ENST00000269582|PNMT REV__ENSG00000141744|ENST00000269582|PNMT MULTI-MSMS UPN48_class_I_Rep_3 7 477.2685546875 2 477.26875 952.522947 0.21623 0.0001032 -1.4475 -0.00069083 -1.2312 -0.00058763 477.26786340262083 107.78 0.10475 111.47 111.41 111.51 3.6813 15 9 2 0 0 0 0.46161 1 25433 25433 14.838 0 1 4486900 + 42778 19391 27064 27076 49086 49086 0.04478651694637392 SVLAELRR 8 Unmodified _SVLAELRR_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MULTI-SECPEP UPN47_class_I_Rep_1 2 472.2875061035156 2 472.287808 942.561064 0.22845 0.0001079 -0.74865 -0.00035358 -0.5202 -0.00024569 472.2878376666744 107.47 0.098618 111.14 111.08 111.17 3.6724 19 14 2 0 0 0 0.72333 1 26330 26330 7.2892 0 1 1143800 42779 5474 27065 27077 49087 49087 0.08748582399982752 SVLARGPRG 9 Unmodified _SVLARGPRG_ 0 0 0 REV__ENST00000598244.5_1_19:58962997-58963642:+|nuORF REV__ENST00000598244.5_1_19:58962997-58963642:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 456.77215576171875 2 456.772326 911.530098 0.11548 5.2747E-05 -0.075652 -3.4556E-05 0.039826 1.8191E-05 456.7721817131663 80.949 0.74101 84.437 84.097 84.838 3.4874 138 73 3 0 0 0 0.46869 1 20182 20182 3.9444 1.3669 1 322230 + 42780 23201 27066 27078 49088 49088 0.07079429085752054 SVLDERLGY 9 Unmodified _SVLDERLGY_ 0 0 0 REV__nc|ENSG00000167447|Q8ND04-2|SMG8 REV__nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS UPN47_class_I_Rep_2 3 526.2738647460938 2 526.274564 1050.53457 0.16557 8.7134E-05 -0.33803 -0.0001779 -0.17246 -9.0762E-05 526.2743217559685 51.086 1.009 54.425 54.047 55.056 3.3386 90 52 2 0 0 0 0.23293 2 11401 11401;11445 18.146 0 1 193950 + 42781 32046 27067 27079 49089;49090 49089 0.011328487179980584 SVLDYFSER 9 Unmodified _SVLDYFSER_ 0 0 0 ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556044.5_1_14:71060086-71067354:-|nuORF ENST00000556044.5_1_14:71060086-71067354:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 558.272216796875 2 558.272021 1114.52949 0.36836 0.00020565 -0.147 -8.2067E-05 0.22136 0.00012358 558.2720066484889 65.31 0.40211 65.31 65.119 65.521 0 57 44 2 0 0 0 0.048729 3 14791 14732;14768;14791 49.527 24.536 1 244950 42782 2826 27068 27080 49091;49092;49093 49093 -0.02319455144629501 SVLDYFSER 9 Unmodified _SVLDYFSER_ 0 0 0 ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556044.5_1_14:71060086-71067354:-|nuORF ENST00000556044.5_1_14:71060086-71067354:-|nuORF MSMS UPN48_class_I_Rep_1 5 558.2723388671875 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 60.608 1 64.082 63.582 64.582 3.4737 0 0 0 0.23173 1 13421 13421 14.405 6.4952 1 42783 2826 27068 27080 49094 49094 -0.02319455144629501 SVLDYFSER 9 Unmodified _SVLDYFSER_ 0 0 0 ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556044.5_1_14:71060086-71067354:-|nuORF ENST00000556044.5_1_14:71060086-71067354:-|nuORF MSMS UPN48_class_I_Rep_3 7 558.2722778320312 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 60.246 1 63.763 63.263 64.263 3.5169 0 0 0 0.10979 1 13219 13219 22.658 7.8198 1 42784 2826 27068 27080 49095 49095 -0.02319455144629501 SVLDYFSER 9 Unmodified _SVLDYFSER_ 0 0 0 ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556044.5_1_14:71060086-71067354:-|nuORF ENST00000556044.5_1_14:71060086-71067354:-|nuORF MSMS UPN48_class_I_Rep_3 7 558.2721557617188 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 60.397 1 63.914 63.414 64.414 3.5169 0 0 0 0.31132 1 13265 13265 10.151 0.80313 1 42785 2826 27068 27080 49096 49096 -0.02319455144629501 SVLHAVASRVR 11 Unmodified _SVLHAVASRVR_ 0 0 0 REV__ENST00000486709.1_1_1:113257111-113257923:-|nuORF REV__ENST00000486709.1_1_1:113257111-113257923:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 597.8563232421875 2 597.856921 1193.69929 0.48828 0.00029192 -0.50848 -0.000304 -0.020205 -1.2079E-05 598.3583623650973 85.688 1.3356 89.06 88.741 90.076 3.3716 281 165 2 0 0 0 0.65821 1 21650 21650 2.4985 2.4985 1 409170 + 42786 19767 27069 27081 49097 49097 0.11018705648439209 SVLHLFIA 8 Unmodified _SVLHLFIA_ 0 0 0 L1MC2_dup510|chr2:31911111-31911613:+|1.7901136303006684|0.0099756498532697|7.49|151.0|26|1|anti-sense L1MC2_dup510|chr2:31911111-31911613:+|1.7901136303006684|0.0099756498532697|7.49|151.0|26|1|anti-sense L1MC2_dup510|chr2:31911111-31911613:+|1.7901136303006684|0.0099756498532697|7.49|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_3 7 450.26959228515625 2 450.271096 898.527639 NaN NaN NaN NaN NaN NaN NaN 68.23 1 71.74 71.24 72.24 3.5094 0 0 0 0.40738 1 15633 15633 0.79363 0 1 42787 11269 27070 27082 49098 49098 0.07431580628065149 SVLILASY 8 Unmodified _SVLILASY_ 0 0 0 nc|ENSG00000176510|Q8NH08|OR10AC1 nc|ENSG00000176510|Q8NH08|OR10AC1 nc|ENSG00000176510|Q8NH08|OR10AC1 MULTI-SECPEP UPN48_class_I_Rep_3 7 432.8851623535156 2 433.255111 864.49567 0.134 5.8055E-05 -0.97835 -0.00042388 -0.84435 -0.00036582 433.2552323751117 96.419 1.8052 100.33 99.796 101.6 3.9084 744 248 5 0 0 0 0.72333 1 23074 23074 8.5933 0 1 55594000 42788 16760 27071 27083 49099 49099 0.058001681542691585 SVLIQAFSPR 10 Unmodified _SVLIQAFSPR_ 0 0 0 REV__nc|ENSG00000120156|Q02763-3|TEK REV__nc|ENSG00000120156|Q02763-3|TEK MSMS UPN47_class_I_Rep_1 2 559.3038940429688 2 559.321848 1116.62914 NaN NaN NaN NaN NaN NaN NaN 40.941 1 44.613 44.113 45.113 3.6719 0 0 0 0.53105 1 8171 8171 1.1933 0 1 + 42789 18700 27072 27084 49100 49100 0.07549407259966756 SVLISAGAVL 10 Unmodified _SVLISAGAVL_ 0 0 0 nc|ENSG00000188672|P18577-8|RHCE;nc|ENSG00000188672|P18577-7|RHCE;nc|ENSG00000188672|P18577-2|RHCE;nc|ENSG00000188672|P18577-5|RHCE;nc|ENSG00000188672|P18577-6|RHCE;ENST00000527187.5_1_1:25712128-25747316:-|nuORF;ENSG00000188672|ENST00000294413|RHCE;nc|ENSG00000188672|P18577-13|RHCE;nc|ENSG00000188672|P18577-12|RHCE;nc|ENSG00000188672|P18577-14|RHCE;nc|ENSG00000188672|P18577-9|RHCE;nc|ENSG00000188672|P18577-4|RHCE;nc|ENSG00000188672|P18577-3|RHCE;nc|ENSG00000188672|P18577-10|RHCE;nc|ENSG00000188672|P18577-11|RHCE nc|ENSG00000188672|P18577-8|RHCE nc|ENSG00000188672|P18577-8|RHCE MSMS UPN47_class_I_Rep_2 3 465.2869567871094 2 465.286943 928.559333 NaN NaN NaN NaN NaN NaN NaN 88.814 1 92.267 91.767 92.767 3.4525 0 0 0 0.53105 1 22076 22076 27.629 2.6378 1 42790 5244 27073 27085 49101 49101 0.09219528591370363 SVLITVRAKKQ 11 Unmodified _SVLITVRAKKQ_ 0 0 0 REV__L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|130|3|sense REV__L1PA10_dup1148|chr3:66312973-66318627:-|1.1506252078970547|0.039741339980259|4.86|151.0|130|3|sense MSMS UPN48_class_I_Rep_2 6 621.90087890625 2 621.898254 1241.78196 NaN NaN NaN NaN NaN NaN NaN 98.421 1 102.19 101.69 102.69 3.7707 0 0 0 0.38417 1 23381 23381 2.9952 0 1 + 42791 28928 27074 27086 49102 49102 0.17073602656591902 SVLKDFLRN 9 Unmodified _SVLKDFLRN_ 0 0 0 nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20 nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MSMS UPN48_class_I_Rep_3 7 546.3138427734375 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 39.724 1 43.38 42.88 43.88 3.6557 0 0 0 0.38639 1 6983 6983 3.9444 0 1 42792 3033 27075 27087 49103 49103 0.07181120742939129 SVLKELQNR 9 Unmodified _SVLKELQNR_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN46_class_I_Rep_3 1 543.816162109375 2 543.81693 1085.61931 0.25751 0.00014004 0.46597 0.0002534 0.72348 0.00039344 543.8167995939943 36.369 0.3009 36.369 36.265 36.566 0 34 23 2 0 0 0 0.44742 1 6745 6745 5.2969 2.0156 1 126860 42793 3242 27076 27088 49104 49104 0.07992219254606425 SVLLNHVRR 9 Unmodified _SVLLNHVRR_ 0 0 0 REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B REV__nc|ENSG00000008869|Q9P2D3-3|HEATR5B MSMS UPN47_class_I_Rep_2 3 547.3326416015625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 69.926 1 73.202 72.702 73.702 3.2761 0 0 0 0.4007 1 17008 17008 0.52476 0 1 + 42794 17559 27077 27089 49105 49105 0.10899051448268438 SVLMNKLL 8 Unmodified _SVLMNKLL_ 0 0 0 REV__L1M4c_dup2527|chr11:67185988-67186789:+|5.1803569121440365|0.2059319321799614|4.65|151.0|33|1|anti-sense REV__L1M4c_dup2527|chr11:67185988-67186789:+|5.1803569121440365|0.2059319321799614|4.65|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 459.280029296875 2 459.278063 916.541574 NaN NaN NaN NaN NaN NaN NaN 87.552 1 91.171 90.671 91.671 3.6187 0 0 0 0.39624 1 20980 20980 9.3474 0 1 + 42795 24588 27078 27090 49106 49106 0.07996490064874706 SVLNFATNR 9 Unmodified _SVLNFATNR_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210;chr3:13327435-13328771|68|17.9|0.37|5.59|-|1|None,NUP210|1 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-MSMS UPN46_class_I_Rep_3 1 511.2771301269531 2 511.274898 1020.53524 0.27096 0.00013854 0.30456 0.00015571 0.57552 0.00029425 511.2750995454077 48.869 0.24725 48.869 48.781 49.029 0 28 17 2 0 0 0 0.21414 1 10254 10254 19.362 3.5148 1 209860 42796 2735 27079 27091 49107 49107 0.025796881576980013 SVLPDRSRIVK 11 Unmodified _SVLPDRSRIVK_ 0 0 0 Arthur1B_dup507|chr3:130862573-130863076:-|1.9029222025660684|0.0201780848486258|6.56|146.0|32|2|anti-sense Arthur1B_dup507|chr3:130862573-130863076:-|1.9029222025660684|0.0201780848486258|6.56|146.0|32|2|anti-sense Arthur1B_dup507|chr3:130862573-130863076:-|1.9029222025660684|0.0201780848486258|6.56|146.0|32|2|anti-sense MSMS UPN48_class_I_Rep_2 6 635.3851928710938 2 635.385511 1268.75647 NaN NaN NaN NaN NaN NaN NaN 102.64 1 106.35 105.85 106.85 3.7108 0 0 0 0.38417 1 24307 24307 1.1933 0 1 42797 408 27080 27092 49108 49108 0.132841281341598 SVLPLLYLLP 10 Unmodified _SVLPLLYLLP_ 0 0 0 ENST00000590238.1_1_19:3754325-3760115:-|nuORF ENST00000590238.1_1_19:3754325-3760115:-|nuORF ENST00000590238.1_1_19:3754325-3760115:-|nuORF MSMS UPN47_class_I_Rep_1 2 564.3792114257812 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 109.47 1 113.08 112.58 113.58 3.6046 0 0 0 0.53105 1 27008 27008 1.4819 0 1 42798 7608 27081 27093 49109 49109 0.14190107244780847 SVLPRALVL 9 Unmodified _SVLPRALVL_ 0 0 0 nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP MULTI-MSMS UPN48_class_I_Rep_1 5 484.3188171386719 2 484.318577 966.622602 0.26723 0.00012943 -0.38416 -0.00018606 -0.11693 -5.6631E-05 484.31834791406527 63.064 0.66769 66.526 66.219 66.886 3.4625 65 43 2 0 0 0 0.43153 1 14172 14172 6.2058 0 1 152730 42799 4126 27082 27094 49110 49110 0.13795514099251704 SVLPRALVL 9 Unmodified _SVLPRALVL_ 0 0 0 nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP MULTI-MSMS UPN48_class_I_Rep_1 5 484.31903076171875 2 484.318577 966.622602 0.24784 0.00012003 -0.21987 -0.00010649 0.027966 1.3544E-05 484.3183966107434 64.379 0.62929 67.833 67.482 68.112 3.4541 101 48 3 0 0 0 0.090251 3 14557 14520;14557;14599 36.127 10.728 1 313320 42800 4126 27082 27094 49111;49112;49113 49112 0.13795514099251704 SVLPRALVL 9 Unmodified _SVLPRALVL_ 0 0 0 nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP MSMS UPN48_class_I_Rep_1 5 484.3183288574219 2 484.318577 966.622602 NaN NaN NaN NaN NaN NaN NaN 64.622 1 68.076 67.576 68.576 3.4541 0 0 0 0.10941 1 14644 14644 22.736 8.8302 1 42801 4126 27082 27094 49114 49114 0.13795514099251704 SVLPRALVL 9 Unmodified _SVLPRALVL_ 0 0 0 nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP MULTI-MSMS UPN48_class_I_Rep_2 6 484.31829833984375 2 484.318577 966.622602 0.28414 0.00013762 -0.39012 -0.00018894 -0.10598 -5.1327E-05 484.3183300876893 64.189 0.41109 67.663 67.368 67.779 3.4743 67 29 3 0 0 0 0.090251 2 14509 14470;14509 36.127 10.728 1 430710 42802 4126 27082 27094 49115;49116 49116 0.13795514099251704 SVLPRALVL 9 Unmodified _SVLPRALVL_ 0 0 0 nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP MULTI-MSMS UPN48_class_I_Rep_2 6 484.3180236816406 2 484.318577 966.622602 0.28215 0.00013665 -0.54788 -0.00026535 -0.26573 -0.0001287 484.3182691762253 64.418 0.20018 67.892 67.779 67.979 3.4743 29 15 2 0 0 0 0.1249 1 14556 14556 29.082 9.8246 1 262720 42803 4126 27082 27094 49117 49117 0.13795514099251704 SVLPRALVL 9 Unmodified _SVLPRALVL_ 0 0 0 nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP nc|ENSG00000164691|Q8N103-3|TAGAP MULTI-MSMS UPN48_class_I_Rep_3 7 484.3187255859375 2 484.318577 966.622602 0.25397 0.000123 -0.36806 -0.00017826 -0.11409 -5.5254E-05 484.3183798450247 64.135 0.55865 67.643 67.284 67.843 3.5083 85 45 2 0 0 0 0.090251 3 14345 14345;14387;14425 36.127 10.728 1 290760 42804 4126 27082 27094 49118;49119;49120 49118 0.13795514099251704 SVLRQIEAY 9 Unmodified _SVLRQIEAY_ 0 0 0 REV__L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|27|2|sense REV__L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|27|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 539.7987670898438 2 539.798206 1077.58186 0.27628 0.00014913 -0.18035 -9.7351E-05 0.09593 5.1783E-05 539.7981865849506 57.421 0.42151 57.421 57.139 57.561 0 56 42 2 0 0 0 0.26948 1 12564 12564 15.847 2.8047 1 238000 + 42805 24807 27083 27095 49121 49121 0.0461712798901317 SVLTVLFGGV 10 Unmodified _SVLTVLFGGV_ 0 0 0 L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|201|2|anti-sense L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|201|2|anti-sense L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|201|2|anti-sense MSMS UPN46_class_I_Rep_3 1 496.29510498046875 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 25.501 1 25.501 25.001 26.001 0 0 0 0 0.53105 1 3508 3508 1.8442 0 1 42806 9831 27084 27096 49122 49122 0.07931815108440787 SVLWLLYR 8 Unmodified _SVLWLLYR_ 0 0 0 L1MA9_dup6531|chr6:170379822-170380915:-|3.1340557234271875|0.2967719988812848|3.4|151.0|46|1|anti-sense L1MA9_dup6531|chr6:170379822-170380915:-|3.1340557234271875|0.2967719988812848|3.4|151.0|46|1|anti-sense L1MA9_dup6531|chr6:170379822-170380915:-|3.1340557234271875|0.2967719988812848|3.4|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_1 5 525.3133544921875 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 49.369 1 52.894 52.394 53.394 3.5246 0 0 0 0.4044 1 9969 9969 4.756 0 1 42807 10151 27085 27097 49123 49123 0.08459227582216045 SVLWVVKTK 9 Unmodified _SVLWVVKTK_ 0 0 0 REV__ENSG00000038210|ENST00000264864|PI4K2B REV__ENSG00000038210|ENST00000264864|PI4K2B MULTI-MSMS UPN48_class_I_Rep_1 5 530.3320922851562 2 530.331685 1058.64882 0.39491 0.00020943 -0.062014 -3.2888E-05 0.33289 0.00017654 530.331556641443 66.934 0.49816 70.385 70.045 70.544 3.4516 44 31 2 0 0 0 0.47197 1 15269 15269 3.5965 1.5367 1 153660 + 42808 17640 27086 27098 49124 49124 0.12183783270734239 SVMRLTISY 9 Oxidation (M) _SVM(Oxidation (M))RLTISY_ SVM(1)RLTISY SVM(83)RLTISY 0 0 1 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MULTI-MSMS UPN46_class_I_Rep_3 1 543.2877197265625 2 543.286617 1084.55868 0.312 0.00016951 0.07614 4.1366E-05 0.38814 0.00021087 543.286506859086 51.647 0.68632 51.647 51.317 52.003 0 118 78 2 0 0 0 0.006303 2 11009 10969;11009 83.429 29.596 1 340870 42809 1526 27087 27099 49125;49126 49126 46 0.019783658800179182 SVNELIYKR 9 Unmodified _SVNELIYKR_ 0 0 0 ENST00000444633.1_1_10:100807788-100807923:+|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7 ENST00000444633.1_1_10:100807788-100807923:+|nuORF ENST00000444633.1_1_10:100807788-100807923:+|nuORF MSMS UPN48_class_I_Rep_3 7 561.3192749023438 2 561.319306 1120.62406 NaN NaN NaN NaN NaN NaN NaN 33.004 1 36.694 36.194 37.194 3.6896 0 0 0 0.37692 1 5077 5077 6.2058 2.2614 1 42810 3483 27088 27100 49127 49127 0.06857103397373976 SVNELIYKR 9 Unmodified _SVNELIYKR_ 0 0 0 ENST00000444633.1_1_10:100807788-100807923:+|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7 ENST00000444633.1_1_10:100807788-100807923:+|nuORF ENST00000444633.1_1_10:100807788-100807923:+|nuORF MSMS UPN48_class_I_Rep_3 7 561.319580078125 2 561.319306 1120.62406 NaN NaN NaN NaN NaN NaN NaN 33.174 1 36.864 36.364 37.364 3.6896 0 0 0 0.3377 1 5125 5125 8.7454 2.5396 1 42811 3483 27088 27100 49128 49128 0.06857103397373976 SVPEFPLSPPK 11 Unmodified _SVPEFPLSPPK_ 0 0 0 ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 599.3297119140625 2 599.329339 1196.64412 0.58544 0.00035087 0.55039 0.00032987 1.1358 0.00068074 599.3291866741263 57.694 1.0324 61.208 60.738 61.771 3.5142 157 76 3 0 0 0 0.63951 1 12533 12533 4.1895 0.59301 1 274630 42812 2227 27089 27101 49129 49129 0.05366854337330551 SVPEFPLSPPK 11 Unmodified _SVPEFPLSPPK_ 0 0 0 ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF ENST00000485226.1_1_1:26227942-26230296:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 599.3295288085938 2 599.329339 1196.64412 0.46176 0.00027675 0.54056 0.00032397 1.0023 0.00060072 599.3293327516964 57.608 0.81606 61.14 60.732 61.548 3.5317 153 65 3 0 0 0 0.56174 1 12404 12404 6.1918 2.5954 1 273660 42813 2227 27089 27101 49130 49130 0.05366854337330551 SVPPVHHP 8 Unmodified _SVPPVHHP_ 0 0 0 ENSG00000185614|ENST00000333323|INKA1;nc|ENSG00000185614|Q96EL1|INKA1 ENSG00000185614|ENST00000333323|INKA1 ENSG00000185614|ENST00000333323|INKA1 MSMS UPN47_class_I_Rep_3 4 435.2335510253906 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 28.464 1 31.798 31.298 32.298 3.3337 0 0 0 0.40738 1 4466 4466 0.79363 0 1 42814 5110 27090 27102 49131 49131 0.01604666274374722 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN46_class_I_Rep_3 1 524.8119506835938 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 54.016 1 54.016 53.516 54.516 0 0 0 0 0.049049 1 11666 11666 37.075 7.2341 1 42815 6610 27091 27103 49132 49132 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN48_class_I_Rep_1 5 524.8106079101562 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 49.085 1 52.609 52.109 53.109 3.5239 0 0 0 0.28608 1 9881 9881 11.495 3.3392 1 42816 6610 27091 27103 49133 49133 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN48_class_I_Rep_1 5 524.8102416992188 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 49.236 1 52.76 52.26 53.26 3.5239 0 0 0 0.15288 1 9928 9928 19.362 3.2128 1 42817 6610 27091 27103 49134 49134 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN48_class_I_Rep_2 6 524.811279296875 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 48.977 1 52.695 52.195 53.195 3.7175 0 0 0 0.20399 1 9845 9845 16.149 3.9084 1 42818 6610 27091 27103 49135 49135 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN48_class_I_Rep_2 6 524.8113403320312 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 48.994 1 52.711 52.211 53.211 3.7175 0 0 0 0.062145 1 9850 9850 33.445 11.908 1 42819 6610 27091 27103 49136 49136 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MSMS UPN48_class_I_Rep_2 6 524.8111572265625 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 49.15 1 52.868 52.368 53.368 3.7175 0 0 0 0.25702 1 9899 9899 13.042 4.2971 1 42820 6610 27091 27103 49137 49137 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 524.81103515625 2 524.811116 1047.60768 0.33998 0.00017842 -0.72873 -0.00038244 -0.38875 -0.00020402 524.8110605263475 49.194 0.26697 52.823 52.64 52.907 3.6291 25 18 2 0 0 0 0.13455 2 9810 9810;9873 27.223 5.6863 1 124710 42821 6610 27091 27103 49138;49139 49138 0.08578022231267823 SVQGIIIYR 9 Unmodified _SVQGIIIYR_ 0 0 0 ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5 ENST00000406156.2_1_6:121975405-121975696:+|nuORF ENST00000406156.2_1_6:121975405-121975696:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 524.810791015625 2 524.811116 1047.60768 0.33742 0.00017708 -0.37386 -0.00019621 -0.036437 -1.9123E-05 524.8106394545448 49.334 0.065582 52.963 52.923 52.989 3.6291 7 4 2 0 0 0 0.31407 1 9894 9894 13.042 4.2971 1 74518 42822 6610 27091 27103 49140 49140 0.08578022231267823 SVQKSRIEI 9 Unmodified _SVQKSRIEI_ 0 0 0 THE1B-int_dup555|chr2:174363899-174365479:-|2.4587266326639905|0.1013236294153529|4.6|151.0|10|1|sense THE1B-int_dup555|chr2:174363899-174365479:-|2.4587266326639905|0.1013236294153529|4.6|151.0|10|1|sense THE1B-int_dup555|chr2:174363899-174365479:-|2.4587266326639905|0.1013236294153529|4.6|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 530.310302734375 2 530.31148 1058.60841 NaN NaN NaN NaN NaN NaN NaN 118.26 1 121.92 121.42 122.42 3.6627 0 0 0 0.39518 1 28352 28352 1.8442 0 1 42823 32930 27092 27104 49141 49141 0.08144816880303551 SVQLNSRLDS 10 Unmodified _SVQLNSRLDS_ 0 0 0 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS UPN46_class_I_Rep_3 1 559.7935791015625 2 559.793652 1117.57275 0.163 9.1245E-05 -0.077967 -4.3645E-05 0.08503 4.7599E-05 559.7935791947948 29.426 0.60643 29.426 29.194 29.801 0 78 50 2 0 0 0 0.55949 1 4616 4616 4.1895 1.1943 1 95417 + 42824 18822 27093 27105 49142 49142 0.01866734632653788 SVQPSSSLSAR 11 Unmodified _SVQPSSSLSAR_ 0 0 0 ENSG00000136536|ENST00000409175|MARCHF7 ENSG00000136536|ENST00000409175|MARCHF7 ENSG00000136536|ENST00000409175|MARCHF7 MULTI-MSMS UPN46_class_I_Rep_3 1 559.7928466796875 2 559.793652 1117.57275 0.163 9.1245E-05 -0.077967 -4.3645E-05 0.08503 4.7599E-05 559.7935791947948 29.426 0.60643 29.426 29.194 29.801 0 78 50 2 0 0 0 0.32655 1 4654 4654 25.997 7.6243 1 95417 42825 2976 27094 27106 49143 49143 0.01866734632653788 SVQTQIESRA 10 Unmodified _SVQTQIESRA_ 0 0 0 REV__ENSG00000187147.18,RNF220,chr1,+,I6.1,44573006,44614164|26|28.84|2|intron REV__ENSG00000187147.18,RNF220,chr1,+,I6.1,44573006,44614164|26|28.84|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 559.7935791015625 2 559.793652 1117.57275 0.163 9.1245E-05 -0.077967 -4.3645E-05 0.08503 4.7599E-05 559.7935791947948 29.426 0.60643 29.426 29.194 29.801 0 78 50 2 0 0 0 0.51508 1 4693 4693 10.151 1.1743 1 95417 + 42826 20922 27095 27107 49144 49144 0.018667346326765255 SVREQELL 8 Unmodified _SVREQELL_ 0 0 0 REV__nc|ENSG00000077684|Q6IE81-2|JADE1 REV__nc|ENSG00000077684|Q6IE81-2|JADE1 MSMS UPN48_class_I_Rep_2 6 487.27801513671875 2 487.269281 972.52401 NaN NaN NaN NaN NaN NaN NaN 44.969 1 48.73 48.23 49.23 3.7617 0 0 0 0.39242 1 8632 8632 10.824 2.0785 1 + 42827 17881 27096 27108 49145 49145 0.03664866063570571 SVRFVGTDLE 10 Unmodified _SVRFVGTDLE_ 0 0 0 REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|77|1|anti-sense REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|77|1|anti-sense MSMS UPN47_class_I_Rep_2 3 561.7930297851562 2 561.793121 1121.57169 NaN NaN NaN NaN NaN NaN NaN 80.729 1 84.098 83.598 84.598 3.3694 0 0 0 0.53105 1 20099 20099 3.2813 0 1 + 42828 29397 27097 27109 49146 49146 0.0157652026375672 SVRLNSPRGAW 11 Unmodified _SVRLNSPRGAW_ 0 0 0 L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|158|2|anti-sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|158|2|anti-sense L1PA13_dup1570|chr3:157186041-157189250:+|3.0072118045659577|0.1835734495549024|4.03|151.0|158|2|anti-sense MSMS UPN47_class_I_Rep_1 2 621.8377075195312 2 621.838728 1241.6629 NaN NaN NaN NaN NaN NaN NaN 33.384 1 37.082 36.582 37.582 3.6983 0 0 0 0.38417 1 5872 5872 1.0715 0.5467 1 42829 13736 27098 27110 49147 49147 0.051738287517537174 SVRPFLVY 8 Unmodified _SVRPFLVY_ 0 0 0 REV__L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|80|3|anti-sense REV__L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7558898925781 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 32.206 1 35.733 35.233 36.233 3.5266 0 0 0 0.40738 1 4868 4868 0.79363 0 1 + 42830 26066 27099 27111 49148 49148 0.05850965656793505 SVRQIPVTHNV 11 Unmodified _SVRQIPVTHNV_ 0 0 0 L1PA15_dup8061|chr20:38079271-38080519:-|3.2971021240888296|0.2718558603357291|3.6|151.0|25|2|sense L1PA15_dup8061|chr20:38079271-38080519:-|3.2971021240888296|0.2718558603357291|3.6|151.0|25|2|sense L1PA15_dup8061|chr20:38079271-38080519:-|3.2971021240888296|0.2718558603357291|3.6|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 417.2394104003906 3 417.238566 1248.69387 NaN NaN NaN NaN NaN NaN NaN 82.598 1 82.598 82.098 83.098 0 0 0 0 0.38417 1 19575 19575 1.1098 0 1 42831 13989 27100 27112 49149 49149 0.07946982066005148 SVRRAQLL 8 Unmodified _SVRRAQLL_ 0 0 0 REV__ENSG00000250673|ENST00000623665|REELD1 REV__ENSG00000250673|ENST00000623665|REELD1 MULTI-MSMS UPN47_class_I_Rep_1 2 471.794921875 2 471.795801 941.577048 -0.069425 -3.2755E-05 -1.032 -0.00048691 -1.1015 -0.00051966 471.79561056712083 48.799 0.45826 52.481 52.345 52.803 3.6819 44 30 3 0 0 0 0.82752 2 10573 10573;10622 15.847 15.847 1 590960 + 42832 21357 27101 27113 49150;49151 49150 0.10392288636899139 SVRRAQLL 8 Unmodified _SVRRAQLL_ 0 0 0 REV__ENSG00000250673|ENST00000623665|REELD1 REV__ENSG00000250673|ENST00000623665|REELD1 MSMS UPN47_class_I_Rep_2 3 471.7964782714844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 49.58 1 52.923 52.423 53.423 3.3431 0 0 0 0.39996 1 10822 10822 7.9102 0.62092 1 + 42833 21357 27101 27113 49152 49152 0.10392288636899139 SVRRAQLL 8 Unmodified _SVRRAQLL_ 0 0 0 REV__ENSG00000250673|ENST00000623665|REELD1 REV__ENSG00000250673|ENST00000623665|REELD1 MULTI-MSMS UPN47_class_I_Rep_3 4 471.7960205078125 2 471.795801 941.577048 0.017031 8.0351E-06 -0.75277 -0.00035515 -0.73574 -0.00034712 471.7956080542298 49.797 0.23995 53.023 52.791 53.031 3.2262 19 13 2 0 0 0 0.82752 2 10939 10887;10939 11.64 11.64 1 682860 + 42834 21357 27101 27113 49153;49154 49154 0.10392288636899139 SVRRAQLL 8 Unmodified _SVRRAQLL_ 0 0 0 REV__ENSG00000250673|ENST00000623665|REELD1 REV__ENSG00000250673|ENST00000623665|REELD1 MSMS UPN47_class_I_Rep_3 4 471.7917785644531 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 49.832 1 53.058 52.558 53.558 3.2262 0 0 0 0.40404 1 10956 10956 5.2307 0.47466 1 + 42835 21357 27101 27113 49155 49155 0.10392288636899139 SVRTYKDWPIS 11 Unmodified _SVRTYKDWPIS_ 0 0 0 REV__L1PB1_dup4743|chr6:2335440-2335786:+|1.0725113075523796|0.0402520173003689|4.74|151.0|25|3|anti-sense REV__L1PB1_dup4743|chr6:2335440-2335786:+|1.0725113075523796|0.0402520173003689|4.74|151.0|25|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 451.23834228515625 3 451.238343 1350.6932 -0.0011043 -4.9829E-07 -0.45592 -0.00020573 -0.45703 -0.00020623 451.2381646502363 48.387 0.2602 51.911 51.774 52.035 3.5239 23 16 2 0 0 0 0.66092 1 9672 9672 2.2527 0.51045 1 96395 + 42836 30409 27102 27114 49156 49156 0.03188142626277113 SVRWSTGDL 9 Unmodified _SVRWSTGDL_ 0 0 0 REV__ENST00000474600.1_1_3:44496519-44497044:-|nuORF REV__ENST00000474600.1_1_3:44496519-44497044:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 510.759521484375 2 510.759081 1019.50361 0.27052 0.00013817 -0.28864 -0.00014743 -0.018123 -9.2567E-06 510.7588866077263 49.738 0.63169 53.432 53.124 53.756 3.6946 56 40 2 0 0 0 0.47197 1 10043 10043 3.5965 0 1 133870 + 42837 22525 27103 27115 49157 49157 -0.00536304596255377 SVSFLQFYF 9 Unmodified _SVSFLQFYF_ 0 0 0 REV__L1MEg_dup1325|chr2:32457056-32457796:-|2.060498409561472|0.0187634273669069|6.78|151.0|34|1|anti-sense REV__L1MEg_dup1325|chr2:32457056-32457796:-|2.060498409561472|0.0187634273669069|6.78|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 569.28466796875 2 569.2844 1136.55425 0.43503 0.00024766 0.045194 2.5728E-05 0.48023 0.00027339 569.2842293974625 76.157 0.25279 79.656 79.439 79.692 3.4996 79 29 4 0 0 0 0.31407 1 18030 18030 13.042 2.2185 1 666910 + 42838 28724 27104 27116 49158 49158 -0.008567752712451693 SVSFSLLQFL 10 Unmodified _SVSFSLLQFL_ 0 0 0 REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.818359375 2 570.818607 1139.62266 0.34206 0.00019526 0.09135 5.2144E-05 0.43341 0.0002474 570.8185026977748 70.52 0.31369 73.891 73.625 73.939 3.3713 71 31 3 0 0 0 0.4561 1 17091 17091 15.248 0 1 311980 + 42839 28676 27105 27117 49159 49159 0.058434693086155676 SVSFSLLQFL 10 Unmodified _SVSFSLLQFL_ 0 0 0 REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.8184814453125 2 570.818607 1139.62266 0.41572 0.0002373 0.27224 0.0001554 0.68797 0.0003927 570.81869163117 70.878 0.74016 74.161 73.834 74.574 3.2828 105 70 2 0 0 0 0.4561 2 17204 17204;17208 15.248 0 1 389170 + 42840 28676 27105 27117 49160;49161 49160 0.058434693086155676 SVSFSLLQFL 10 Unmodified _SVSFSLLQFL_ 0 0 0 REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.8190307617188 2 570.818607 1139.62266 0.44782 0.00025563 0.18679 0.00010662 0.63461 0.00036225 570.8186306029635 70.922 0.41569 74.133 73.772 74.188 3.2113 61 34 2 0 0 0 0.4561 1 17307 17307 15.248 0 1 276620 + 42841 28676 27105 27117 49162 49162 0.058434693086155676 SVSFSLLQFL 10 Unmodified _SVSFSLLQFL_ 0 0 0 REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_2 6 570.8201904296875 2 570.818607 1139.62266 NaN NaN NaN NaN NaN NaN NaN 71.061 1 74.597 74.097 75.097 3.5359 0 0 0 0.53105 1 16557 16557 11.495 0 1 + 42842 28676 27105 27117 49163 49163 0.058434693086155676 SVSHLQPLM 9 Unmodified _SVSHLQPLM_ 0 0 0 ENST00000470683.1_1_1:113153424-113161548:-|nuORF;ENST00000369669.5_1_1:113140697-113161406:-|nuORF;nc|ENSG00000007341|Q8TDW4-3|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-6|ST7L;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;ENST00000473206.5_1_1:113149890-113161735:-|nuORF;ENST00000497457.5_1_1:113121036-113161548:-|nuORF;ENST00000480988.5_1_1:113119662-113161548:-|nuORF;ENST00000479436.5_1_1:113134145-113161558:-|nuORF;ENST00000477332.5_1_1:113149890-113161548:-|nuORF;ENST00000467335.5_1_1:113153424-113161735:-|nuORF;ENST00000498383.5_1_1:113153265-113161717:-|nuORF;ENST00000497235.5_1_1:113140697-113161735:-|nuORF;ENST00000485753.5_1_1:113153424-113159539:-|nuORF;ENSG00000007341|ENST00000358039|ST7L ENST00000470683.1_1_1:113153424-113161548:-|nuORF ENST00000470683.1_1_1:113153424-113161548:-|nuORF MSMS UPN46_class_I_Rep_3 1 506.2696228027344 2 506.268227 1010.5219 NaN NaN NaN NaN NaN NaN NaN 40.623 1 40.623 40.123 41.123 0 0 0 0 0.36505 1 7897 7897 7.2892 0.56607 1 42843 733 27106 27118 49164 49164 0.01706114054104546 SVSHQCQRPKP 11 Unmodified _SVSHQCQRPKP_ 0 0 0 L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|73|2|sense L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|73|2|sense L1PA6_dup5023|chr13:109502309-109508446:-|4.982157461492841|0.0751006144808317|6.05|148.0|73|2|sense MSMS UPN47_class_I_Rep_3 4 633.8221435546875 2 633.822221 1265.62989 NaN NaN NaN NaN NaN NaN NaN 60.818 1 63.983 63.483 64.483 3.1651 0 0 0 0.38417 1 14306 14306 4.5289 0 1 42844 14656 27107 27119 49165 49165 0.007698786373566691 SVSKNPSYI 9 Unmodified _SVSKNPSYI_ 0 0 0 ENST00000476011.1_1_3:185330354-185331220:+|nuORF;ENST00000473760.5_1_3:185316772-185331220:+|nuORF ENST00000476011.1_1_3:185330354-185331220:+|nuORF ENST00000476011.1_1_3:185330354-185331220:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 497.76361083984375 2 497.763832 993.513111 0.29883 0.00014875 -0.18039 -8.9791E-05 0.11844 5.8956E-05 497.76363741793415 52.282 0.55676 55.488 55.119 55.676 3.2055 72 37 3 0 0 0 0.43153 1 11724 11724 6.2058 0 1 133470 42845 6943 27108 27120 49166 49166 0.01609463689283075 SVSLGLIIFY 10 Unmodified _SVSLGLIIFY_ 0 0 0 L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|112|1|anti-sense L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|112|1|anti-sense L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|112|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.3234252929688 2 556.323525 1110.6325 0.46822 0.00026048 -0.19106 -0.00010629 0.27716 0.00015419 556.323201706714 80.103 0.75208 83.412 82.856 83.608 3.309 208 86 3 0 0 0 0.40227 1 20049 20049 19.257 2.1441 1 282100 42846 9787 27109 27121 49167 49167 0.0816065731398794 SVSLLLVFVLK 11 Unmodified _SVSLLLVFVLK_ 0 0 0 L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|90|3|anti-sense L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|90|3|anti-sense L1M1_dup563|chr1:198738853-198740295:+|4.60148309251184|0.0686152895814447|6.07|151.0|90|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 406.2311706542969 3 406.600442 1216.7795 0.077254 3.1412E-05 2.3427 0.00095254 2.4199 0.00098395 406.601366316243 32.776 0.079861 36.426 36.386 36.465 3.6497 11 9 2 0 0 0 22.551 1 5103 5103 2.4348 0.97967 1 47475 42847 8601 27110 27122 49168 49168 0.17977754198932416 SVSRKRRRA 9 Unmodified _SVSRKRRRA_ 0 0 0 REV__ENSG00000154165|ENST00000284311|GPR15 REV__ENSG00000154165|ENST00000284311|GPR15 MSMS UPN47_class_I_Rep_3 4 558.3475952148438 2 558.347055 1114.67956 NaN NaN NaN NaN NaN NaN NaN 15.086 1 18.451 17.951 18.951 3.3659 0 0 0 0.4007 1 702 702 0.52476 0 1 + 42848 19728 27111 27123 49169 49169 0.12680374428373398 SVTEKSTCFS 10 Unmodified _SVTEKSTCFS_ 0 0 0 REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|8|1|sense REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 544.7506103515625 2 544.750064 1087.48558 NaN NaN NaN NaN NaN NaN NaN 117.8 1 121.43 120.93 121.93 3.6215 0 0 0 0.53105 1 28714 28714 1.4819 0.28856 1 + 42849 25333 27112 27124 49170 49170 -0.05466807633251847 SVTEVQLRF 9 Unmodified _SVTEVQLRF_ 0 0 0 nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 MULTI-SECPEP UPN48_class_I_Rep_2 6 539.7965698242188 2 539.798206 1077.58186 0.58907 0.00031798 0.25066 0.00013531 0.83973 0.00045329 539.7981311933033 54.972 0.36205 58.528 58.346 58.708 3.5559 37 19 2 0 0 0 0.10301 1 11672 11672 18.146 3.5647 1 111680 42850 2973 27113 27125 49171 49171 0.0461712798901317 SVTFYWLV 8 Unmodified _SVTFYWLV_ 0 0 0 nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-4|CACNA1D MULTI-MSMS UPN47_class_I_Rep_1 2 507.76806640625 2 507.768386 1013.52222 0.17963 9.121E-05 -0.97048 -0.00049278 -0.79085 -0.00040157 507.7678017624169 55.176 0.6232 58.654 58.234 58.857 3.4785 51 38 2 0 0 0 0.82752 1 12511 12511 8.5933 0 1 61109 42851 3760 27114 27126 49172 49172 0.015998570456190464 SVTFYWLV 8 Unmodified _SVTFYWLV_ 0 0 0 nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-4|CACNA1D MULTI-MSMS UPN47_class_I_Rep_1 2 507.7681884765625 2 507.768386 1013.52222 0.18838 9.5654E-05 -0.85186 -0.00043255 -0.66348 -0.0003369 507.76777273436574 55.713 0.62505 59.191 58.857 59.482 3.4785 49 38 2 0 0 0 0.82752 1 12604 12604 8.5933 0 1 81471 42852 3760 27114 27126 49173 49173 0.015998570456190464 SVTLIECII 9 Unmodified _SVTLIECII_ 0 0 0 REV__MLT1C_dup1624|chr2:48477818-48478287:+|1.5340712102219598|0.1278106986528422|3.59|151.0|1|1|sense REV__MLT1C_dup1624|chr2:48477818-48478287:+|1.5340712102219598|0.1278106986528422|3.59|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 495.77978515625 2 495.780636 989.546719 NaN NaN NaN NaN NaN NaN NaN 83.28 1 86.818 86.318 87.318 3.5386 0 0 0 0.36505 1 20825 20825 7.2892 0.93513 1 + 42853 31639 27115 27127 49174 49174 0.051527491368233314 SVTNPSNQDPN 11 Unmodified _SVTNPSNQDPN_ 0 0 0 REV__ENSG00000183354|ENST00000399933|KIAA2026 REV__ENSG00000183354|ENST00000399933|KIAA2026 MSMS UPN48_class_I_Rep_1 5 586.7643432617188 2 586.762549 1171.51054 NaN NaN NaN NaN NaN NaN NaN 28.632 1 32.189 31.689 32.689 3.5571 0 0 0 0.38417 1 3860 3860 2.4985 0.19575 1 + 42854 20784 27116 27128 49175 49175 -0.06835036506322467 SVTPEGVIKQR 11 Unmodified _SVTPEGVIKQR_ 0 0 0 nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;ENSG00000109756|ENST00000691494|RAPGEF2 nc|ENSG00000158987|Q8TEU7-6|RAPGEF6 nc|ENSG00000158987|Q8TEU7-6|RAPGEF6 MULTI-MSMS UPN46_class_I_Rep_3 1 405.2350158691406 3 405.234822 1212.68264 -0.085004 -3.4446E-05 0.16678 6.7585E-05 0.081776 3.3139E-05 405.2348471848673 35.059 0.66831 35.059 34.764 35.432 0 109 49 3 0 0 0 0.28763 3 6317 6317;6360;6401 16.838 7.5946 1 330660 42855 1908 27117 27129 49176;49177;49178 49176 0.08480159971827561 SVTSLCAPEYE 11 Unmodified _SVTSLCAPEYE_ 0 0 0 ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6 ENSG00000180263|ENST00000343958|FGD6 ENSG00000180263|ENST00000343958|FGD6 MSMS UPN48_class_I_Rep_1 5 599.7706298828125 2 599.768454 1197.52235 NaN NaN NaN NaN NaN NaN NaN 30.831 1 34.373 33.873 34.873 3.542 0 0 0 0.38417 1 4481 4481 2.9952 0.69251 1 42856 4885 27118 27130 49179 49179 -0.0685055580736389 SVTVRVFRR 9 Unmodified _SVTVRVFRR_ 0 0 0 ENST00000486151.5_1_10:49386068-49414901:-|nuORF ENST00000486151.5_1_10:49386068-49414901:-|nuORF ENST00000486151.5_1_10:49386068-49414901:-|nuORF MSMS UPN48_class_I_Rep_3 7 560.3403930664062 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 95.827 1 99.736 99.236 100.24 3.9084 0 0 0 0.39518 1 22713 22713 1.8442 0 1 42857 7035 27119 27131 49180 49180 0.11267337965318802 SVTYLRLRR 9 Unmodified _SVTYLRLRR_ 0 0 0 ENSG00000130751|ENST00000602212|NPAS1 ENSG00000130751|ENST00000602212|NPAS1 ENSG00000130751|ENST00000602212|NPAS1 MULTI-MSMS UPN46_class_I_Rep_3 1 582.353515625 2 582.354014 1162.69348 0.51827 0.00030181 -1.0766 -0.00062696 -0.55833 -0.00032514 582.3532763251969 99.895 0.19778 99.895 99.78 99.978 0 27 20 2 0 0 0 0.50088 1 24336 24336 0.52476 0 1 342970 42858 2676 27120 27132 49181 49181 0.1186360713677459 SVVGFLSQR 9 Unmodified _SVVGFLSQR_ 0 0 0 ENST00000553943.1_1_14:69616197-69619695:-|nuORF;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 ENST00000553943.1_1_14:69616197-69619695:-|nuORF ENST00000553943.1_1_14:69616197-69619695:-|nuORF MSMS UPN48_class_I_Rep_2 6 496.7638854980469 2 496.779816 991.545079 NaN NaN NaN NaN NaN NaN NaN 49.519 1 53.214 52.714 53.714 3.6946 0 0 0 0.10427 1 10014 10014 23.79 5.6548 1 42859 3159 27121 27133 49182 49182 0.0489687616310448 SVVGIPVFR 9 Unmodified _SVVGIPVFR_ 0 0 0 ENST00000460072.5_1_2:39984490-39995716:-|nuORF;ENSG00000138050.15,THUMPD2,chr2,-,I2.1,39770120,39771504|70|5.15|3|intron;ENSG00000138050.15,THUMPD2,chr2,-,I2.1,39770120,39771504|70|5.15|2|intron;nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050.15,THUMPD2,chr2,-,I2.1,39770120,39771504|70|5.15|7|intron;ENSG00000138050|ENST00000505747|THUMPD2 ENST00000460072.5_1_2:39984490-39995716:-|nuORF ENST00000460072.5_1_2:39984490-39995716:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.2945556640625 2 487.295102 972.575651 0.29629 0.00014438 -0.68805 -0.00033528 -0.39176 -0.0001909 487.294520884307 59.815 0.44563 63.295 63.181 63.627 3.4801 53 36 2 0 0 0 0.11683 3 13190 13190;13194;13246 30.637 7.937 1 96111 42860 3058 27122 27134 49183;49184;49185 49183 0.0882665454812468 SVVGIPVFR 9 Unmodified _SVVGIPVFR_ 0 0 0 ENST00000460072.5_1_2:39984490-39995716:-|nuORF;ENSG00000138050.15,THUMPD2,chr2,-,I2.1,39770120,39771504|70|5.15|3|intron;ENSG00000138050.15,THUMPD2,chr2,-,I2.1,39770120,39771504|70|5.15|2|intron;nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENSG00000138050.15,THUMPD2,chr2,-,I2.1,39770120,39771504|70|5.15|7|intron;ENSG00000138050|ENST00000505747|THUMPD2 ENST00000460072.5_1_2:39984490-39995716:-|nuORF ENST00000460072.5_1_2:39984490-39995716:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 487.7967834472656 2 487.295102 972.575651 0.20876 0.00010173 -0.28249 -0.00013765 -0.073728 -3.5927E-05 487.2947758507969 59.654 0.44773 63.171 62.979 63.427 3.5169 53 35 2 0 0 0 0.15122 3 13006 13006;13042;13100 25.399 7.2643 1 127950 42861 3058 27122 27134 49186;49187;49188 49186 0.0882665454812468 SVVILRHK 8 Unmodified _SVVILRHK_ 0 0 0 REV__nc|ENSG00000170581|P52630-4|STAT2 REV__nc|ENSG00000170581|P52630-4|STAT2 MSMS UPN46_class_I_Rep_3 1 476.3063049316406 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 76.875 1 76.875 76.375 77.375 0 0 0 0 0.4044 1 17951 17951 4.756 0 1 + 42862 20371 27123 27135 49189 49189 0.12525763159328562 SVVILWGNV 9 Unmodified _SVVILWGNV_ 0 0 0 REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|35|1|anti-sense REV__MER45B_dup597|chr6:111487353-111488336:-|2.41079877706205|0.0748229362052588|5.01|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.78656005859375 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.27 1 112.87 112.37 113.37 3.6046 0 0 0 0.38639 1 26938 26938 3.9444 1.6417 1 + 42863 31329 27124 27136 49190 49190 0.06630948311237717 SVVKKNTTV 9 Unmodified _SVVKKNTTV_ 0 0 0 Charlie4a_dup881|chr4:87008529-87008989:+|1.0161919426379973|0.0098697857363259|6.69|151.0|2|1|sense Charlie4a_dup881|chr4:87008529-87008989:+|1.0161919426379973|0.0098697857363259|6.69|151.0|2|1|sense Charlie4a_dup881|chr4:87008529-87008989:+|1.0161919426379973|0.0098697857363259|6.69|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 488.2979431152344 2 488.295299 974.576045 NaN NaN NaN NaN NaN NaN NaN 59.916 1 63.433 62.933 63.933 3.5169 0 0 0 0.38478 1 13119 13119 4.3292 0.38484 1 42864 526 27125 27137 49191 49191 0.087740294773198 SVVYKIIVHSK 11 Unmodified _SVVYKIIVHSK_ 0 0 0 REV__L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|33|2|anti-sense REV__L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|33|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 636.88818359375 2 636.887355 1271.76016 0.43352 0.0002761 0.47412 0.00030196 0.90764 0.00057806 636.8874218164299 108.66 0.57419 112.29 112.17 112.75 3.6321 165 68 3 0 0 0 0.52578 1 26441 26441 7.1017 0.89594 1 16342000 + 42865 27752 27126 27138 49192 49192 0.13514797908010223 SVWSWVFGG 9 Unmodified _SVWSWVFGG_ 0 0 0 L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|326|3|anti-sense L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|326|3|anti-sense L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|326|3|anti-sense MSMS UPN47_class_I_Rep_2 3 512.7481689453125 2 512.747985 1023.48142 NaN NaN NaN NaN NaN NaN NaN 75.271 1 78.584 78.084 79.084 3.3127 0 0 0 0.38639 1 18577 18577 3.9444 0.3479 1 42866 14882 27127 27139 49193 49193 -0.029384842739887063 SVWTTHSV 8 Unmodified _SVWTTHSV_ 0 0 0 REV__ENST00000332012.5_1_17:79278372-79278921:-|nuORF REV__ENST00000332012.5_1_17:79278372-79278921:-|nuORF MSMS UPN46_class_I_Rep_3 1 458.6754455566406 2 458.729792 915.445031 NaN NaN NaN NaN NaN NaN NaN 37.746 1 37.746 37.246 38.246 0 0 0 0 0.40604 1 7129 7129 2.5775 0 1 + 42867 21784 27128 27140 49194 49194 -0.016073611707156488 SVYEEFVQI 9 Unmodified _SVYEEFVQI_ 0 0 0 REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 557.7786254882812 2 557.276772 1112.53899 0.39451 0.00021985 -0.13764 -7.6701E-05 0.25687 0.00014315 557.2766942104748 75.138 0.41611 75.138 75.001 75.417 0 69 39 2 0 0 0 0.43153 1 17421 17421 6.2058 0 1 199930 + 42868 22377 27129 27141 49195 49195 -0.012776868590890444 SVYEEFVQI 9 Unmodified _SVYEEFVQI_ 0 0 0 REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 558.2921752929688 2 557.276772 1112.53899 0.37706 0.00021013 0.069351 3.8648E-05 0.44641 0.00024878 557.2766966602494 70.604 0.73921 73.975 73.686 74.425 3.3713 167 68 3 0 0 0 0.30034 1 17222 17222 13.906 0 1 533820 + 42869 22377 27129 27141 49196 49196 -0.012776868590890444 SVYFFFLFSDF 11 Unmodified _SVYFFFLFSDF_ 0 0 0 REV__L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|192|2|anti-sense REV__L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|192|2|anti-sense MSMS UPN46_class_I_Rep_3 1 473.5635681152344 3 473.560423 1417.65944 NaN NaN NaN NaN NaN NaN NaN 50.796 1 50.796 50.296 51.296 0 0 0 0 0.38417 1 10752 10752 0.50596 0.051438 1 + 42870 25683 27130 27142 49197 49197 -0.03268278865493812 SVYKASLSLIE 11 Unmodified _SVYKASLSLIE_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MSMS UPN48_class_I_Rep_2 6 605.3390502929688 2 605.339904 1208.66525 NaN NaN NaN NaN NaN NaN NaN 69.597 1 73.118 72.618 73.618 3.5216 0 0 0 0.38417 1 16132 16132 1.1933 0.59184 1 42871 4955 27131 27143 49198 49198 0.06926819646196236 SVYLDTFCVL 10 Unmodified _SVYLDTFCVL_ 0 0 0 REV__L1ME1_dup27050|chr16:80993825-80994863:+|1.1938378184967433|0.0550186623952886|4.44|151.0|59|2|anti-sense REV__L1ME1_dup27050|chr16:80993825-80994863:+|1.1938378184967433|0.0550186623952886|4.44|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_1 5 580.2875366210938 2 580.288825 1158.5631 NaN NaN NaN NaN NaN NaN NaN 69.338 1 72.793 72.293 73.293 3.4548 0 0 0 0.53105 1 16079 16079 13.906 0.86358 1 + 42872 27715 27132 27144 49199 49199 -0.00984169697062498 SVYLDTFCVL 10 Unmodified _SVYLDTFCVL_ 0 0 0 REV__L1ME1_dup27050|chr16:80993825-80994863:+|1.1938378184967433|0.0550186623952886|4.44|151.0|59|2|anti-sense REV__L1ME1_dup27050|chr16:80993825-80994863:+|1.1938378184967433|0.0550186623952886|4.44|151.0|59|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 580.2572631835938 2 580.288825 1158.5631 0.48095 0.00027909 -3.744 -0.0021726 -3.263 -0.0018935 580.7885813792178 69.163 0.10907 72.685 72.602 72.711 3.5216 11 8 2 0 0 0 0.84575 1 15993 15993 19.257 4.4187 1 115320 + 42873 27715 27132 27144 49200 49200 -0.00984169697062498 SVYLFLGVFKP 11 Unmodified _SVYLFLGVFKP_ 0 0 0 ENST00000355683.9_2_14:31364241-31364373:-|nuORF ENST00000355683.9_2_14:31364241-31364373:-|nuORF ENST00000355683.9_2_14:31364241-31364373:-|nuORF MSMS UPN47_class_I_Rep_1 2 634.8785400390625 2 635.365724 1268.7169 NaN NaN NaN NaN NaN NaN NaN 107.27 1 110.95 110.45 111.45 3.6724 0 0 0 0.38417 1 26281 26281 4.897 1.9018 1 42874 6281 27133 27145 49201 49201 0.09328608130726934 SVYVFIFQT 9 Unmodified _SVYVFIFQT_ 0 0 0 L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|137|2|anti-sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|137|2|anti-sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|137|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.2925415039062 2 552.292225 1102.5699 0.50953 0.00028141 0.17912 9.8925E-05 0.68865 0.00038033 552.2923221629284 86.079 0.55598 89.692 89.36 89.916 3.613 97 59 2 0 0 0 0.33908 1 20676 20676 11.495 0 1 213190 42875 11135 27134 27146 49202 49202 0.02271511245817237 SVYVFIFQT 9 Unmodified _SVYVFIFQT_ 0 0 0 L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|137|2|anti-sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|137|2|anti-sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|137|2|anti-sense MSMS UPN48_class_I_Rep_2 6 552.2928466796875 2 552.292225 1102.5699 NaN NaN NaN NaN NaN NaN NaN 85.691 1 89.397 88.897 89.897 3.7058 0 0 0 0.28608 1 20384 20384 11.495 0 1 42876 11135 27134 27146 49203 49203 0.02271511245817237 SVYVYKVL 8 Unmodified _SVYVYKVL_ 0 0 0 ENSG00000180596|ENST00000396984|H2BC4;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18 ENSG00000180596|ENST00000396984|H2BC4 ENSG00000180596|ENST00000396984|H2BC4 MULTI-SECPEP UPN46_class_I_Rep_3 1 485.3485107421875 2 485.784036 969.553519 0.19962 9.6973E-05 0.019864 9.6498E-06 0.21949 0.00010662 485.7838654554445 58.166 0.10988 58.166 58.109 58.219 0 20 12 2 0 0 0 0.72333 1 12784 12784 7.2892 0 1 103440 42877 4894 27135 27147 49204 49204 0.06752430079700389 SWEKWVPRSN 10 Unmodified _SWEKWVPRSN_ 0 0 0 MER103C_dup7067|chr14:60103220-60103486:+|1.0315127346745627|0.0418579878823136|4.62|149.0|2|1|sense MER103C_dup7067|chr14:60103220-60103486:+|1.0315127346745627|0.0418579878823136|4.62|149.0|2|1|sense MER103C_dup7067|chr14:60103220-60103486:+|1.0315127346745627|0.0418579878823136|4.62|149.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 644.8228759765625 2 644.825286 1287.63602 NaN NaN NaN NaN NaN NaN NaN 39.738 1 43.117 42.617 43.617 3.3785 0 0 0 0.53105 1 7838 7838 1.1933 0.12188 1 42878 15763 27136 27148 49205 49205 0.003707201405632077 SWFVLCWR 8 Unmodified _SWFVLCWR_ 0 0 0 REV__L1PA8_dup1708|chr3:185801511-185802192:+|2.4871881160591225|0.006279086226076|8.63|148.0|36|2|anti-sense REV__L1PA8_dup1708|chr3:185801511-185802192:+|2.4871881160591225|0.006279086226076|8.63|148.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.7723388671875 2 548.77348 1095.53241 -0.02213 -1.2144E-05 -0.32859 -0.00018032 -0.35072 -0.00019247 548.7732603726423 31.098 0.38438 34.828 34.587 34.971 3.7293 45 30 2 0 0 0 0.82752 1 5145 5145 2.3027 0 1 99143 + 42879 30206 27137 27149 49206 49206 -0.011538585008111113 SWGPHYHI 8 Unmodified _SWGPHYHI_ 0 0 0 REV__ENST00000595082.1_1_19:39727075-39727930:-|nuORF REV__ENST00000595082.1_1_19:39727075-39727930:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 498.2061462402344 2 498.737951 995.46135 -0.1633 -8.1445E-05 -2.6385 -0.0013159 -2.8018 -0.0013974 498.73641399077815 15.919 0.091537 19.305 19.283 19.374 3.3864 13 9 2 0 0 0 0.72333 1 933 933 0.79363 0 1 20918 + 42880 23190 27138 27150 49207 49207 -0.0365623521396401 SWGPHYHI 8 Unmodified _SWGPHYHI_ 0 0 0 REV__ENST00000595082.1_1_19:39727075-39727930:-|nuORF REV__ENST00000595082.1_1_19:39727075-39727930:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 498.737951 995.46135 -0.32654 -0.00016286 -1.8861 -0.00094067 -2.2126 -0.0011035 498.73694795971625 15.635 0.10234 19.132 19.098 19.2 3.4968 -0.0845 0.00027661 NaN 0.79363 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 21252 + 42881 23190 27138 27150 -0.0365623521396401 SWICLWLFT 9 Unmodified _SWICLWLFT_ 0 0 0 REV__L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|43|1|anti-sense REV__L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|43|1|anti-sense MSMS UPN48_class_I_Rep_1 5 584.7976684570312 2 584.79662 1167.57869 NaN NaN NaN NaN NaN NaN NaN 72.631 1 76.104 75.604 76.604 3.4732 0 0 0 0.39518 1 17059 17059 1.8442 0.36234 1 + 42882 28679 27139 27151 49208 49208 0.0016016161059724254 SWIPVAGTQLE 11 Unmodified _SWIPVAGTQLE_ 0 0 0 REV__L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|373|3|anti-sense REV__L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|373|3|anti-sense MSMS UPN48_class_I_Rep_2 6 600.815673828125 2 600.816596 1199.61864 NaN NaN NaN NaN NaN NaN NaN 36.307 1 39.994 39.494 40.494 3.6877 0 0 0 0.38417 1 6087 6087 2.2828 0 1 + 42883 29877 27140 27152 49209 49209 0.02681379814907814 SWLCLCLMWM 10 Unmodified _SWLCLCLMWM_ 0 0 0 ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 643.2828979492188 2 643.283651 1284.55275 0.71099 0.00045737 -1.0237 -0.00065851 -0.31267 -0.00020114 643.2827244427966 71.756 0.15968 71.756 71.723 71.883 0 19 12 3 0 0 0 0.54078 1 16559 16559 6.7232 0 1 180580 42884 6577 27141 27153 49210 49210 -0.07814515219160967 SWLCLCLMWM 10 Unmodified _SWLCLCLMWM_ 0 0 0 ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF MSMS UPN46_class_I_Rep_3 1 643.2822265625 2 643.283651 1284.55275 NaN NaN NaN NaN NaN NaN NaN 70.862 1 70.862 70.362 71.362 0 0 0 0 0.53105 1 16304 16304 10.824 0.024421 1 42885 6577 27141 27153 49211 49211 -0.07814515219160967 SWLCLCLMWM 10 Unmodified _SWLCLCLMWM_ 0 0 0 ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF MSMS UPN46_class_I_Rep_3 1 643.2828369140625 2 643.283651 1284.55275 NaN NaN NaN NaN NaN NaN NaN 71.246 1 71.246 70.746 71.746 0 0 0 0 0.53105 1 16403 16403 6.7232 0 1 42886 6577 27141 27153 49212 49212 -0.07814515219160967 SWLCLCLMWM 10 Unmodified _SWLCLCLMWM_ 0 0 0 ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF ENST00000397728.7_1_21:47609640-47609970:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 643.2820434570312 2 643.283651 1284.55275 0.52505 0.00033775 -1.3101 -0.00084279 -0.78509 -0.00050503 643.2825635115524 66.155 0.498 69.607 69.398 69.896 3.4516 43 32 2 0 0 0 0.54078 1 15118 15118 6.7232 0.51738 1 105310 42887 6577 27141 27153 49213 49213 -0.07814515219160967 SWLILLIVYQ 10 Unmodified _SWLILLIVYQ_ 0 0 0 L1PB1_dup4798|chr6:18174470-18177538:-|2.628431024399215|0.060665745233622|5.44|151.0|127|1|anti-sense L1PB1_dup4798|chr6:18174470-18177538:-|2.628431024399215|0.060665745233622|5.44|151.0|127|1|anti-sense L1PB1_dup4798|chr6:18174470-18177538:-|2.628431024399215|0.060665745233622|5.44|151.0|127|1|anti-sense MSMS UPN48_class_I_Rep_1 5 624.3802490234375 2 624.373549 1246.73255 NaN NaN NaN NaN NaN NaN NaN 92.423 1 96.047 95.547 96.547 3.624 0 0 0 0.53105 1 22210 22210 1.4819 0 1 42888 15120 27142 27154 49214 49214 0.11904894647818764 SWLKSIWE 8 Unmodified _SWLKSIWE_ 0 0 0 REV__L1MB3_dup9956|chr10:5769591-5770280:+|2.005031727371425|0.3080388894815463|2.7|151.0|24|3|sense REV__L1MB3_dup9956|chr10:5769591-5770280:+|2.005031727371425|0.3080388894815463|2.7|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 524.7762451171875 2 524.776742 1047.53893 NaN NaN NaN NaN NaN NaN NaN 26.441 1 29.936 29.436 30.436 3.4945 0 0 0 0.40604 1 3826 3826 2.5775 0 1 + 42889 25934 27143 27155 49215 49215 0.017063579315390598 SWLRFWGP 8 Unmodified _SWLRFWGP_ 0 0 0 ENST00000583204.5_1_17:30348129-30360999:+|nuORF;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B ENST00000583204.5_1_17:30348129-30360999:+|nuORF ENST00000583204.5_1_17:30348129-30360999:+|nuORF MSMS UPN47_class_I_Rep_3 4 524.7717895507812 2 524.771794 1047.52904 NaN NaN NaN NaN NaN NaN NaN 113.49 1 116.99 116.49 117.49 3.4963 0 0 0 0.40738 1 27839 27839 0.79363 0 1 42890 7567 27144 27156 49216 49216 0.007172147168375886 SWMEAFIF 8 Unmodified _SWMEAFIF_ 0 0 0 REV__AluJo_dup12424|chr3:9466743-9467032:+|2.1723919986798674|0.3844487240405326|2.5|151.0|18|1|anti-sense REV__AluJo_dup12424|chr3:9466743-9467032:+|2.1723919986798674|0.3844487240405326|2.5|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 515.2884521484375 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 26.8 1 30.566 30.066 31.066 3.7662 0 0 0 0.40738 1 3889 3889 0.79363 0 1 + 42891 16982 27145 27157 49217 49217 -0.050563622402250985 SWMEAFIF 8 Unmodified _SWMEAFIF_ 0 0 0 REV__AluJo_dup12424|chr3:9466743-9467032:+|2.1723919986798674|0.3844487240405326|2.5|151.0|18|1|anti-sense REV__AluJo_dup12424|chr3:9466743-9467032:+|2.1723919986798674|0.3844487240405326|2.5|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7388305664062 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 27.819 1 31.376 30.876 31.876 3.5571 0 0 0 0.40738 1 3639 3639 0.79363 0 1 + 42892 16982 27145 27157 49218 49218 -0.050563622402250985 SWNHRHHIL 9 Unmodified _SWNHRHHIL_ 0 0 0 AluSx1_dup105916|chr19:18909513-18909812:-|1.329105654994564|0.3437179949722208|1.95|151.0|15|1|anti-sense AluSx1_dup105916|chr19:18909513-18909812:-|1.329105654994564|0.3437179949722208|1.95|151.0|15|1|anti-sense AluSx1_dup105916|chr19:18909513-18909812:-|1.329105654994564|0.3437179949722208|1.95|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_2 6 600.3140869140625 2 600.312681 1198.61081 NaN NaN NaN NaN NaN NaN NaN 37.111 1 40.813 40.313 41.313 3.7021 0 0 0 0.40038 1 6314 6314 0.6015 0 1 42893 310 27146 27158 49219 49219 0.019447101286459656 SWPPFQDLPL 10 Unmodified _SWPPFQDLPL_ 0 0 0 nc|ENSG00000168310|P14316-2|IRF2;ENSG00000168310|ENST00000393593|IRF2 nc|ENSG00000168310|P14316-2|IRF2 nc|ENSG00000168310|P14316-2|IRF2 MSMS UPN48_class_I_Rep_1 5 600.3057250976562 2 600.308406 1198.60226 NaN NaN NaN NaN NaN NaN NaN 48.171 1 51.692 51.192 52.192 3.5219 0 0 0 0.53105 1 9599 9599 3.2813 0.97858 1 42894 4364 27147 27159 49220 49220 0.010902986488190436 SWQIHFVN 8 Unmodified _SWQIHFVN_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS UPN47_class_I_Rep_1 2 516.237548828125 2 515.758884 1029.50321 NaN NaN NaN NaN NaN NaN NaN 26.659 1 30.421 29.921 30.921 3.7624 0 0 0 0.40604 1 3846 3846 2.5775 0 1 + 42895 19290 27148 27160 49221 49221 -0.010356795254210738 SWQRVFRL 8 Unmodified _SWQRVFRL_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS UPN47_class_I_Rep_2 3 546.3086547851562 2 546.309075 1090.6036 0.42785 0.00023374 -0.27843 -0.00015211 0.14942 8.163E-05 546.3088022938408 75.019 0.47368 78.331 77.998 78.471 3.3127 143 53 4 0 0 0 0.82752 2 18498 18498;18532 34.402 9.0024 1 585510 + 42896 17556 27149 27161 49222;49223 49222 0.0619197752821492 SWRLLPRGRL 10 Unmodified _SWRLLPRGRL_ 0 0 0 ENST00000403000.6_1_8:145689231-145689483:-|nuORF ENST00000403000.6_1_8:145689231-145689483:-|nuORF ENST00000403000.6_1_8:145689231-145689483:-|nuORF MSMS UPN47_class_I_Rep_3 4 627.3847045898438 2 627.383106 1252.75166 NaN NaN NaN NaN NaN NaN NaN 104.27 1 107.79 107.29 108.29 3.5205 0 0 0 0.53105 1 25566 25566 3.5965 0 1 42897 6603 27150 27162 49224 49224 0.13539288782089898 SWRLRIVMKT 10 Unmodified _SWRLRIVMKT_ 0 0 0 REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|16|2|sense REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 645.3775634765625 2 645.379175 1288.7438 NaN NaN NaN NaN NaN NaN NaN 62.284 1 65.758 65.258 66.258 3.4738 0 0 0 0.53105 1 13906 13906 2.9952 0.49676 1 + 42898 32261 27151 27163 49225 49225 0.11097393470276984 SWRLRIVMKT 10 Unmodified _SWRLRIVMKT_ 0 0 0 REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|16|2|sense REV__THE1B-int_dup3268|chr12:9975177-9976717:+|2.588760641974325|0.059622883936586|5.44|150.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 645.3783569335938 2 645.379175 1288.7438 NaN NaN NaN NaN NaN NaN NaN 107.24 1 110.92 110.42 111.42 3.6783 0 0 0 0.53105 1 25337 25337 5.7319 0 1 + 42899 32261 27151 27163 49226 49226 0.11097393470276984 SWRRGLFW 8 Unmodified _SWRRGLFW_ 0 0 0 ENST00000606788.5_1_20:44518901-44519711:+|nuORF ENST00000606788.5_1_20:44518901-44519711:+|nuORF ENST00000606788.5_1_20:44518901-44519711:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 554.1761474609375 2 554.295968 1106.57738 0.50287 0.00027874 0.79477 0.00044054 1.2976 0.00071928 554.7994874249366 116.65 0.046738 120.11 120.07 120.12 3.462 5 3 2 0 0 0 0.72333 1 28712 28712 0 0 1 13152 42900 7686 27152 27164 49227 49227 0.028357083567698282 SWRRIQGK 8 Unmodified _SWRRIQGK_ 0 0 0 ENST00000565652.1_1_15:75660495-75660924:-|nuORF ENST00000565652.1_1_15:75660495-75660924:-|nuORF ENST00000565652.1_1_15:75660495-75660924:-|nuORF MSMS UPN48_class_I_Rep_1 5 515.79736328125 2 515.798875 1029.5832 NaN NaN NaN NaN NaN NaN NaN 29.015 1 32.565 32.065 33.065 3.5499 0 0 0 0.40157 1 3971 3971 7.2892 0 1 42901 7488 27153 27165 49228 49228 0.06958806868419742 SWSCWHCCCT 10 Unmodified _SWSCWHCCCT_ 0 0 0 REV__ENST00000440083.6_1_12:6443346-6451099:-|nuORF REV__ENST00000440083.6_1_12:6443346-6451099:-|nuORF MSMS UPN48_class_I_Rep_2 6 405.7976379394531 3 405.799468 1214.37658 NaN NaN NaN NaN NaN NaN NaN 113.48 1 117.15 116.65 117.65 3.663 0 0 0 0.53105 1 27088 27088 0.15932 0 1 + 42902 22326 27154 27166 49229 49229 -0.22203756400404018 SWSELFVL 8 Unmodified _SWSELFVL_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MSMS UPN48_class_I_Rep_3 7 490.75811767578125 2 490.758018 979.501483 NaN NaN NaN NaN NaN NaN NaN 23.259 1 27.01 26.51 27.51 3.7507 0 0 0 0.40738 1 2517 2517 0.79363 0 1 42903 3854 27155 27167 49230 49230 0.01091266665969215 SWSRCVILL 9 Unmodified _SWSRCVILL_ 0 0 0 L1M3_dup5271|chr14:30973485-30974629:+|3.198572453935747|0.0137070748816761|7.87|151.0|70|2|anti-sense L1M3_dup5271|chr14:30973485-30974629:+|3.198572453935747|0.0137070748816761|7.87|151.0|70|2|anti-sense L1M3_dup5271|chr14:30973485-30974629:+|3.198572453935747|0.0137070748816761|7.87|151.0|70|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 538.7992553710938 2 538.799694 1075.58484 0.4518 0.00024343 -0.75798 -0.0004084 -0.30617 -0.00016497 538.7992132685567 81.175 0.89613 84.499 84.194 85.09 3.3231 144 100 2 0 0 0 0.090251 1 20353 20353 36.127 0.082828 1 592000 42904 8773 27156 27168 49231 49231 0.05006679842176709 SWSRGHSWY 9 Unmodified _SWSRGHSWY_ 0 0 0 HERVL-int_dup1726|chr11:28157125-28159885:+|1.1085636886041188|0.2527114429981039|2.13|151.0|105|2|anti-sense HERVL-int_dup1726|chr11:28157125-28159885:+|1.1085636886041188|0.2527114429981039|2.13|151.0|105|2|anti-sense HERVL-int_dup1726|chr11:28157125-28159885:+|1.1085636886041188|0.2527114429981039|2.13|151.0|105|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.2617797851562 2 583.262322 1164.51009 -0.034411 -2.0071E-05 1.1447 0.00066764 1.1103 0.00064757 583.2628111957638 39.391 0.65583 43.057 42.665 43.321 3.6668 69 46 2 0 0 0 0.41259 1 7701 7701 7.2892 0 1 105900 42905 8346 27157 27169 49232 49232 -0.0655836664486742 SWSSVKSRR 9 Unmodified _SWSSVKSRR_ 0 0 0 REV__LTR22A_dup105|chrX:149491847-149492285:-|1.463389533687761|0.1769653944515763|3.05|151.0|23|1|anti-sense REV__LTR22A_dup105|chrX:149491847-149492285:-|1.463389533687761|0.1769653944515763|3.05|151.0|23|1|anti-sense MSMS UPN47_class_I_Rep_1 2 546.761474609375 2 546.799072 1091.58359 NaN NaN NaN NaN NaN NaN NaN 21.906 1 25.581 25.081 26.081 3.6749 0 0 0 0.39428 1 2456 2456 2.0598 0 1 + 42906 30879 27158 27170 49233 49233 0.0414618179761419 SWTYRYVM 8 Unmodified _SWTYRYVM_ 0 0 0 MER11A_dup480|chr8:38811437-38812512:+|1.000763049886292|0.0362330571038917|4.79|151.0|23|2|sense MER11A_dup480|chr8:38811437-38812512:+|1.000763049886292|0.0362330571038917|4.79|151.0|23|2|sense MER11A_dup480|chr8:38811437-38812512:+|1.000763049886292|0.0362330571038917|4.79|151.0|23|2|sense MSMS UPN48_class_I_Rep_1 5 553.28759765625 2 553.260402 1104.50625 NaN NaN NaN NaN NaN NaN NaN 75.998 1 79.498 78.998 79.998 3.4996 0 0 0 0.40643 1 18037 18037 2.0598 0.21551 1 42907 15782 27159 27171 49234 49234 -0.041821724629471646 SWVVPQLP 8 Unmodified _SWVVPQLP_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 MULTI-MSMS UPN46_class_I_Rep_3 1 463.2690734863281 2 463.260728 924.506903 0.22173 0.00010272 -0.42535 -0.00019705 -0.20362 -9.4329E-05 463.26012883829014 109.43 0.34956 109.43 109.32 109.67 0 55 29 3 0 0 0 0.82752 1 26892 26892 5.2307 0 1 1105700 + 42908 19581 27160 27172 49235 49235 0.04162990248414644 SWVVPQLP 8 Unmodified _SWVVPQLP_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 MULTI-SECPEP UPN46_class_I_Rep_3 1 462.8271179199219 2 463.260728 924.506903 0.22105 0.0001024 -0.82336 -0.00038143 -0.60231 -0.00027903 463.26010966086756 109.08 0.53902 109.08 108.83 109.37 0 44 34 2 0 0 0 0.72333 1 26701 26701 5.2307 0 1 1906600 + 42909 19581 27160 27172 49236 49236 0.04162990248414644 SWVVPQLP 8 Unmodified _SWVVPQLP_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 MULTI-SECPEP UPN48_class_I_Rep_1 5 462.8275451660156 2 463.260728 924.506903 0.054026 2.5028E-05 -0.50904 -0.00023582 -0.45502 -0.00021079 463.26020442374653 108.81 0.43485 112.44 112.29 112.72 3.6321 109 49 3 0 0 0 0.72333 1 26302 26302 5.2307 0 1 5959400 + 42910 19581 27160 27172 49237 49237 0.04162990248414644 SWVVPQLP 8 Unmodified _SWVVPQLP_ 0 0 0 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 REV__nc|ENSG00000148288|Q8N5D6-2|GBGT1 MULTI-MSMS UPN48_class_I_Rep_2 6 463.2689514160156 2 463.260728 924.506903 0.188 8.7094E-05 -0.70114 -0.00032481 -0.51314 -0.00023772 463.2601499997021 108.81 0.47468 112.48 112.29 112.76 3.6746 116 50 3 0 0 0 0.82752 1 25871 25871 5.2307 0 1 5670800 + 42911 19581 27160 27172 49238 49238 0.04162990248414644 SWVWFHFQ 8 Unmodified _SWVWFHFQ_ 0 0 0 REV__L1MB3_dup6037|chr6:110777410-110778166:+|1.0949937938185086|0.0089100192244447|6.94|150.0|12|2|sense REV__L1MB3_dup6037|chr6:110777410-110778166:+|1.0949937938185086|0.0089100192244447|6.94|150.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 568.7693481445312 2 568.769252 1135.52395 NaN NaN NaN NaN NaN NaN NaN 26.965 1 30.528 30.028 31.028 3.5629 0 0 0 0.40625 1 3397 3397 2.3027 0 1 + 42912 25902 27161 27173 49239 49239 -0.038390891457765974 SWWFAAPI 8 Unmodified _SWWFAAPI_ 0 0 0 L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|171|1|anti-sense;L1PA7_dup7137|chr9:5133434-5138739:+|10.844915405965171|0.472202241130597|4.52|151.0|159|1|anti-sense;L1PA7_dup7136|chr9:5114958-5116074:+|1.0911925073310131|0.1417025879486993|2.94|151.0|62|3|anti-sense;L1PA7_dup11743|chr15:49001464-49005047:-|2.4191035896641933|0.4756131486928624|2.35|151.0|158|2|anti-sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|171|1|anti-sense L1PA7_dup7926|chrX:57251727-57257704:+|3.3899724276592598|0.4997080284485171|2.76|151.0|171|1|anti-sense MSMS UPN47_class_I_Rep_2 3 489.2475891113281 2 489.247621 976.480688 NaN NaN NaN NaN NaN NaN NaN 72.215 1 75.505 75.005 76.005 3.2899 0 0 0 0.40738 1 17691 17691 0.79363 0 1 42913 14734 27162 27174 49240 49240 -0.008492789230558628 SWWKAPLL 8 Unmodified _SWWKAPLL_ 0 0 0 THE1C_dup9610|chr21:29363735-29364098:+|1.2987254126167318|0.081311158464124|4.0|151.0|17|1|anti-sense THE1C_dup9610|chr21:29363735-29364098:+|1.2987254126167318|0.081311158464124|4.0|151.0|17|1|anti-sense THE1C_dup9610|chr21:29363735-29364098:+|1.2987254126167318|0.081311158464124|4.0|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7832336425781 2 500.78437 999.554188 NaN NaN NaN NaN NaN NaN NaN 35.331 1 38.841 38.341 39.341 3.5101 0 0 0 0.40738 1 5766 5766 0.79363 0 1 42914 32937 27163 27175 49241 49241 0.054392695194110274 SWYCARFNR 9 Unmodified _SWYCARFNR_ 0 0 0 REV__L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|242|3|anti-sense REV__L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|242|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.7418212890625 2 601.779825 1201.5451 NaN NaN NaN NaN NaN NaN NaN 114.38 1 118.04 117.54 118.54 3.6619 0 0 0 0.39428 1 27338 27338 2.0598 0 1 + 42915 29612 27164 27176 49242 49242 -0.04761447108558059 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS UPN48_class_I_Rep_1 5 515.24853515625 2 515.248015 1028.48148 0.28075 0.00014466 0.16633 8.5702E-05 0.44708 0.00023036 515.2479193376428 75.842 0.45285 79.341 79.071 79.524 3.4996 67 45 2 0 0 0 0.0070866 2 18004 17931;18004 71.922 9.3496 1 139780 42916 2312 27165 27177 49243;49244 49244 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MSMS UPN48_class_I_Rep_2 6 515.2479248046875 2 515.248015 1028.48148 NaN NaN NaN NaN NaN NaN NaN 75.478 1 79.079 78.579 79.579 3.6011 0 0 0 0.029402 1 17802 17802 45.7 5.7423 1 42917 2312 27165 27177 49245 49245 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MSMS UPN48_class_I_Rep_2 6 515.247314453125 2 515.248015 1028.48148 NaN NaN NaN NaN NaN NaN NaN 75.888 1 79.489 78.989 79.989 3.6011 0 0 0 0.10941 1 17911 17911 22.736 0.98964 1 42918 2312 27165 27177 49246 49246 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS UPN48_class_I_Rep_3 7 515.248046875 2 515.248015 1028.48148 0.38176 0.0001967 -0.156 -8.0377E-05 0.22576 0.00011632 515.2478362625757 75.617 0.53869 79.182 78.987 79.526 3.5658 88 56 2 0 0 0 0.062142 3 17815 17738;17780;17815 43.772 12.504 1 156370 42919 2312 27165 27177 49247;49248;49249 49249 -0.03162529064661612 SYADQMFLL 9 Oxidation (M) _SYADQM(Oxidation (M))FLL_ SYADQM(1)FLL SYADQM(86)FLL 0 0 1 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_1 5 552.2577514648438 2 552.257525 1102.5005 0.54036 0.00029842 -0.12056 -6.6582E-05 0.4198 0.00023184 552.2573891336273 71.192 1.0118 74.658 74.308 75.319 3.466 183 97 2 0 0 0 0.0070571 4 16623 16589;16623;16662;16699 86.332 46.375 1 815000 42920 1544 27166 27178 49250;49251;49252;49253 49251 48 -0.04665315765282685 SYADQMFLL 9 Oxidation (M) _SYADQM(Oxidation (M))FLL_ SYADQM(1)FLL SYADQM(77)FLL 0 0 1 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_2 6 552.2576293945312 2 552.257525 1102.5005 0.48438 0.0002675 -0.021956 -1.2126E-05 0.46243 0.00025538 552.2574331529038 71.138 0.98997 74.688 74.228 75.218 3.5505 223 106 4 0 0 0 0.0058741 4 16511 16511;16544;16580;16616 96.367 56.409 1 879660 42921 1544 27166 27178 49254;49255;49256;49257 49254 48 -0.04665315765282685 SYADQMFLL 9 Oxidation (M) _SYADQM(Oxidation (M))FLL_ SYADQM(1)FLL SYADQM(77)FLL 0 0 1 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_3 7 552.2576293945312 2 552.257525 1102.5005 0.4461 0.00024636 -0.061483 -3.3954E-05 0.38462 0.00021241 552.257417353402 71.076 1.1311 74.594 74.184 75.315 3.5185 299 110 4 0 0 0 0.0058741 5 16446 16412;16446;16484;16522;16561 86.332 46.375 1 867980 42922 1544 27166 27178 49258;49259;49260;49261;49262 49259 48 -0.04665315765282685 SYANNNSNTD 10 Unmodified _SYANNNSNTD_ 0 0 0 L1MB8_dup1921|chr2:135626681-135627031:-|1.02901393569361|0.0208564293538819|5.62|150.0|27|3|anti-sense L1MB8_dup1921|chr2:135626681-135627031:-|1.02901393569361|0.0208564293538819|5.62|150.0|27|3|anti-sense L1MB8_dup1921|chr2:135626681-135627031:-|1.02901393569361|0.0208564293538819|5.62|150.0|27|3|anti-sense MSMS UPN47_class_I_Rep_3 4 550.216064453125 2 550.217974 1098.4214 NaN NaN NaN NaN NaN NaN NaN 23.118 1 26.468 25.968 26.968 3.3503 0 0 0 0.53105 1 2883 2883 1.4819 0 1 42923 10975 27167 27179 49263 49263 -0.12387871465853095 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_1 5 573.8018188476562 2 573.800749 1145.58694 0.46527 0.00026697 -0.049486 -2.8395E-05 0.41578 0.00023858 573.8006068799322 67.62 0.56721 71.072 70.928 71.495 3.4517 52 40 2 0 0 0 0.066364 3 15525 15525;15532;15612 41.956 20.419 1 339670 42924 1473 27168 27180 49264;49265;49266 49264 0.01997431851600595 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_2 6 573.800537109375 2 573.800749 1145.58694 0.49563 0.00028439 -0.05594 -3.2099E-05 0.43969 0.0002523 573.8006856708422 67.47 0.57605 70.966 70.618 71.194 3.4964 81 48 2 0 0 0 0.019142 3 15511 15434;15474;15511 63.961 29.559 1 195730 42925 1473 27168 27180 49267;49268;49269 49269 0.01997431851600595 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_2 6 573.8014526367188 2 573.800749 1145.58694 NaN NaN NaN NaN NaN NaN NaN 67.666 1 71.162 70.662 71.662 3.4964 0 0 0 0.078496 1 15552 15552 29.082 14.243 1 42926 1473 27168 27180 49270 49270 0.01997431851600595 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_3 7 573.8005981445312 2 573.800749 1145.58694 0.52231 0.0002997 -0.40267 -0.00023105 0.11963 6.8647E-05 573.8003950078305 67.278 0.30663 70.786 70.594 70.901 3.5077 38 25 2 0 0 0 0.097406 1 15330 15330 34.402 23.578 1 161130 42927 1473 27168 27180 49271 49271 0.01997431851600595 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MULTI-MSMS UPN48_class_I_Rep_3 7 573.8011474609375 2 573.800749 1145.58694 0.52417 0.00030077 0.093541 5.3674E-05 0.61771 0.00035445 573.8006320144952 67.412 0.34644 70.92 70.778 71.125 3.5077 46 31 2 0 0 0 0.0058741 2 15366 15366;15408 76.825 31.125 1 172110 42928 1473 27168 27180 49272;49273 49272 0.01997431851600595 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 MSMS UPN48_class_I_Rep_3 7 573.8013305664062 2 573.800749 1145.58694 NaN NaN NaN NaN NaN NaN NaN 67.699 1 71.207 70.707 71.707 3.5077 0 0 0 0.2408 1 15474 15474 13.906 6.6168 1 42929 1473 27168 27180 49274 49274 0.01997431851600595 SYAVAFRGEV 10 Unmodified _SYAVAFRGEV_ 0 0 0 REV__ENST00000575246.6_1_17:4711576-4721404:+|nuORF REV__ENST00000575246.6_1_17:4711576-4721404:+|nuORF MSMS UPN47_class_I_Rep_1 2 549.7815551757812 2 549.782556 1097.55056 NaN NaN NaN NaN NaN NaN NaN 81.64 1 85.152 84.652 85.652 3.5122 0 0 0 0.53105 1 20378 20378 9.3831 1.473 1 + 42930 23105 27169 27181 49275 49275 0.005685549549070856 SYCCCPWASCC 11 Unmodified _SYCCCPWASCC_ 0 0 0 ENST00000598472.1_1_19:49979410-49989281:+|nuORF ENST00000598472.1_1_19:49979410-49989281:+|nuORF ENST00000598472.1_1_19:49979410-49989281:+|nuORF MSMS UPN47_class_I_Rep_2 3 613.1801147460938 2 613.183808 1224.35306 NaN NaN NaN NaN NaN NaN NaN 24.043 1 27.509 27.009 28.009 3.4655 0 0 0 0.38417 1 3124 3124 0.30703 0.30703 1 42931 7655 27170 27182 49276 49276 -0.2501393822922182 SYCCCPWASCC 11 Unmodified _SYCCCPWASCC_ 0 0 0 ENST00000598472.1_1_19:49979410-49989281:+|nuORF ENST00000598472.1_1_19:49979410-49989281:+|nuORF ENST00000598472.1_1_19:49979410-49989281:+|nuORF MSMS UPN47_class_I_Rep_3 4 613.1814575195312 2 613.183808 1224.35306 NaN NaN NaN NaN NaN NaN NaN 12.062 1 15.438 14.938 15.938 3.3753 0 0 0 0.38417 1 11 11 0.35063 0.35063 1 42932 7655 27170 27182 49277 49277 -0.2501393822922182 SYCLKGTVFQ 10 Unmodified _SYCLKGTVFQ_ 0 0 0 L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|9|2|sense L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|9|2|sense L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.2869262695312 2 573.286617 1144.55868 0.39533 0.00022664 0.60487 0.00034677 1.0002 0.0005734 573.2870176056801 47.274 0.5353 50.796 50.433 50.968 3.5219 52 33 2 0 0 0 0.52562 1 9358 9358 8.7454 0.15213 1 161000 42933 10365 27171 27183 49278 49278 -0.007816341199941235 SYCLKGTVFQ 10 Unmodified _SYCLKGTVFQ_ 0 0 0 L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|9|2|sense L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|9|2|sense L1MB3_dup16457|chr20:34462616-34463080:-|1.067119585053012|0.037206586274044|4.84|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.2880249023438 2 573.286617 1144.55868 0.39321 0.00022542 0.89436 0.00051273 1.2876 0.00073815 573.2871697852443 47.245 0.71676 50.881 50.506 51.223 3.6363 76 60 2 0 0 0 0.52562 1 9199 9199 8.7454 0.83525 1 160280 42934 10365 27171 27183 49279 49279 -0.007816341199941235 SYCPFIIF 8 Unmodified _SYCPFIIF_ 0 0 0 REV__L1MEc_dup14328|chr13:50101783-50102497:+|2.892132818133577|0.0862993984480191|5.07|151.0|45|3|anti-sense REV__L1MEc_dup14328|chr13:50101783-50102497:+|2.892132818133577|0.0862993984480191|5.07|151.0|45|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.2434387207031 2 495.243689 988.472826 -0.59284 -0.0002936 0.18114 8.9707E-05 -0.4117 -0.00020389 495.2437026387936 17.872 2.1873 21.231 20.656 22.844 3.3581 425 238 3 0 0 0 0.82752 1 1267 1267 0.79363 0 1 211660 + 42935 28382 27172 27184 49280 49280 -0.02187174234836675 SYDEDLDELC 10 Unmodified _SYDEDLDELC_ 0 0 0 ENSG00000136931|ENST00000373588|NR5A1 ENSG00000136931|ENST00000373588|NR5A1 ENSG00000136931|ENST00000373588|NR5A1 MSMS UPN46_class_I_Rep_3 1 601.2296142578125 2 601.231901 1200.44925 NaN NaN NaN NaN NaN NaN NaN 119.24 1 119.24 118.74 119.74 0 0 0 0 0.53105 1 29627 29627 1.6526 0 1 42936 2998 27173 27185 49281 49281 -0.14295729320633654 SYDFHLRL 8 Unmodified _SYDFHLRL_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MSMS UPN48_class_I_Rep_2 6 525.77197265625 2 525.771991 1049.52943 NaN NaN NaN NaN NaN NaN NaN 52.624 1 56.263 55.763 56.763 3.639 0 0 0 0.40157 1 10950 10950 7.2892 1.5574 1 42937 5418 27174 27186 49282 49282 0.006645896460213407 SYDLSSVTLK 10 Unmodified _SYDLSSVTLK_ 0 0 0 REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF MSMS UPN48_class_I_Rep_3 7 556.7946166992188 2 556.795329 1111.5761 NaN NaN NaN NaN NaN NaN NaN 112.14 1 115.81 115.31 116.31 3.6614 0 0 0 0.53105 1 26636 26636 1.6526 0 1 + 42938 20055 27175 27187 49283 49283 0.024779846866522348 SYDPAVLLL 9 Unmodified _SYDPAVLLL_ 0 0 0 L1MB5_dup352|chr1:111652633-111653399:+|1.774640050982349|0.0211094966054449|6.39|151.0|14|2|sense L1MB5_dup352|chr1:111652633-111653399:+|1.774640050982349|0.0211094966054449|6.39|151.0|14|2|sense L1MB5_dup352|chr1:111652633-111653399:+|1.774640050982349|0.0211094966054449|6.39|151.0|14|2|sense MSMS UPN47_class_I_Rep_2 3 495.78125 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 82.371 1 85.769 85.269 86.269 3.3984 0 0 0 0.36505 1 20531 20531 7.2892 0.93513 1 42939 10611 27176 27188 49284 49284 0.04815822354487409 SYDPAVLLL 9 Unmodified _SYDPAVLLL_ 0 0 0 L1MB5_dup352|chr1:111652633-111653399:+|1.774640050982349|0.0211094966054449|6.39|151.0|14|2|sense L1MB5_dup352|chr1:111652633-111653399:+|1.774640050982349|0.0211094966054449|6.39|151.0|14|2|sense L1MB5_dup352|chr1:111652633-111653399:+|1.774640050982349|0.0211094966054449|6.39|151.0|14|2|sense MSMS UPN47_class_I_Rep_3 4 495.7805480957031 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 83.348 1 86.698 86.198 87.198 3.35 0 0 0 0.19137 1 20903 20903 16.942 2.3606 1 42940 10611 27176 27188 49285 49285 0.04815822354487409 SYELRYFQ 8 Unmodified _SYELRYFQ_ 0 0 0 ENST00000480427.1_1_12:125420028-125420310:-|nuORF;ENSG00000116251|ENST00000234875|RPL22 ENST00000480427.1_1_12:125420028-125420310:-|nuORF ENST00000480427.1_1_12:125420028-125420310:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 553.2696533203125 2 553.269281 1104.52401 0.53313 0.00029497 -0.062059 -3.4336E-05 0.47107 0.00026063 553.2692762209666 63.962 0.70029 67.436 67.051 67.752 3.4743 121 51 3 0 0 0 0.82752 1 14451 14451 12.532 0.89125 1 401290 42941 2173 27177 27189 49286 49286 -0.024071339364581945 SYELRYFQ 8 Unmodified _SYELRYFQ_ 0 0 0 ENST00000480427.1_1_12:125420028-125420310:-|nuORF;ENSG00000116251|ENST00000234875|RPL22 ENST00000480427.1_1_12:125420028-125420310:-|nuORF ENST00000480427.1_1_12:125420028-125420310:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 553.2699584960938 2 553.269281 1104.52401 0.40735 0.00022537 0.18918 0.00010467 0.59653 0.00033004 553.2693863497639 63.755 0.79729 67.264 66.896 67.693 3.5091 141 63 3 0 0 0 0.82752 1 14402 14402 12.532 0 1 642250 42942 2173 27177 27189 49287 49287 -0.024071339364581945 SYERRGRM 8 Unmodified _SYERRGRM_ 0 0 0 L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|27|2|sense L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|27|2|sense L1MA5_dup4044|chr17:80301244-80302392:+|1.3751746444513242|0.0739815660087325|4.22|151.0|27|2|sense MSMS UPN47_class_I_Rep_1 2 527.764404296875 2 527.764175 1053.5138 NaN NaN NaN NaN NaN NaN NaN 27.672 1 31.438 30.938 31.938 3.7662 0 0 0 0.40625 1 4152 4152 2.3027 0 1 42943 9916 27178 27190 49288 49288 -0.01082020142644069 SYEYQFGQV 9 Unmodified _SYEYQFGQV_ 0 0 0 L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.7520141601562 2 560.750921 1119.48729 0.48202 0.00027029 0.029363 1.6465E-05 0.51138 0.00028676 560.7508323955393 77.504 0.55739 81.026 80.795 81.353 3.5221 76 51 3 0 0 0 0.42249 1 18531 18531 6.7232 1.9672 1 189240 42944 12630 27179 27191 49289 49289 -0.06767430553009035 SYEYQFGQV 9 Unmodified _SYEYQFGQV_ 0 0 0 L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.7510375976562 2 560.750921 1119.48729 0.46224 0.0002592 0.21374 0.00011985 0.67598 0.00037906 560.7506513460835 77.775 0.09259 81.377 81.345 81.437 3.6016 13 9 2 0 0 0 0.47197 1 18398 18398 3.5965 0.8613 1 48790 42945 12630 27179 27191 49290 49290 -0.06767430553009035 SYEYQFGQV 9 Unmodified _SYEYQFGQV_ 0 0 0 L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.750921 1119.48729 0.48892 0.00027416 0.41612 0.00023334 0.90504 0.0005075 561.2521952891877 77.872 0.068726 81.495 81.452 81.521 3.6222 0.058797 0.00016356 NaN 3.5965 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 25456 42946 12630 27179 27191 -0.06767430553009035 SYEYQFGQV 9 Unmodified _SYEYQFGQV_ 0 0 0 L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense L1ME3A_dup12516|chr14:102716043-102717131:-|1.037216718827143|0.0608143146739835|4.09|151.0|63|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 560.750921 1119.48729 0.46224 0.0002592 0.21374 0.00011985 0.67598 0.00037906 560.7506513460835 77.775 0.09259 81.377 81.345 81.437 3.6016 -0.058797 -6.3411E-05 NaN 3.5965 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 48790 42947 12630 27179 27191 -0.06767430553009035 SYFANFFNR 9 Unmodified _SYFANFFNR_ 0 0 0 REV__ENSG00000089723|ENST00000203664|OTUB2 REV__ENSG00000089723|ENST00000203664|OTUB2 MSMS UPN47_class_I_Rep_3 4 583.2726440429688 2 583.274898 1164.53524 NaN NaN NaN NaN NaN NaN NaN 63.915 1 67.089 66.589 67.589 3.1741 0 0 0 0.39518 1 15250 15250 1.8442 0.19162 1 + 42948 18008 27180 27192 49291 49291 -0.04044311842312709 SYFHFPIN 8 Unmodified _SYFHFPIN_ 0 0 0 REV__L1MB8_dup3147|chr3:125239224-125240116:+|1.8177523195877687|0.0843624201924425|4.43|151.0|52|2|anti-sense REV__L1MB8_dup3147|chr3:125239224-125240116:+|1.8177523195877687|0.0843624201924425|4.43|151.0|52|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.7478637695312 2 512.747985 1023.48142 0.25405 0.00013026 -0.1531 -7.8504E-05 0.10094 5.1759E-05 512.7477974229274 75.228 0.63823 78.632 78.254 78.893 3.4034 96 57 2 0 0 0 0.82752 1 18492 18492 2.3027 0 1 151470 + 42949 26405 27181 27193 49292 49292 -0.02938484274000075 SYFHGPYNCN 10 Unmodified _SYFHGPYNCN_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|17|1|sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 601.7431030273438 2 601.240198 1200.46584 0.4467 0.00026858 -2.0201 -0.0012145 -1.5734 -0.00094597 601.2377581871724 68.695 0.34525 71.892 71.65 71.995 3.1977 49 26 3 0 0 0 0.56333 1 16681 16681 1.4819 0.28856 1 69790 + 42950 31485 27182 27194 49293 49293 -0.12637138853347096 SYFKRKMR 8 Unmodified _SYFKRKMR_ 0 0 0 REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN48_class_I_Rep_2 6 558.310302734375 2 558.310761 1114.60697 NaN NaN NaN NaN NaN NaN NaN 76.606 1 80.218 79.718 80.718 3.6116 0 0 0 0.388 1 18091 18091 12.532 0.29089 1 + 42951 18468 27183 27195 49294 49294 0.054249043105755845 SYFKRKMR 8 Unmodified _SYFKRKMR_ 0 0 0 REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN48_class_I_Rep_2 6 558.360107421875 2 558.310761 1114.60697 NaN NaN NaN NaN NaN NaN NaN 76.653 1 80.264 79.764 80.764 3.6116 0 0 0 0.40404 1 18104 18104 5.2307 0.90143 1 + 42952 18468 27183 27195 49295 49295 0.054249043105755845 SYFKRKMR 8 Unmodified _SYFKRKMR_ 0 0 0 REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN48_class_I_Rep_3 7 558.3109741210938 2 558.310761 1114.60697 NaN NaN NaN NaN NaN NaN NaN 76.663 1 80.246 79.746 80.746 3.5831 0 0 0 0.388 1 18063 18063 12.532 0.29089 1 + 42953 18468 27183 27195 49296 49296 0.054249043105755845 SYFKRKMRK 9 Unmodified _SYFKRKMRK_ 0 0 0 REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN48_class_I_Rep_2 6 622.3566284179688 2 622.358242 1242.70193 NaN NaN NaN NaN NaN NaN NaN 41.269 1 45.02 44.52 45.52 3.7508 0 0 0 0.40038 1 7522 7522 0.6015 0.076735 1 + 42954 18468 27184 27196 49297 49297 0.09028837781761467 SYFKRNVS 8 Unmodified _SYFKRNVS_ 0 0 0 REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|52|3|sense REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|52|3|sense MSMS UPN48_class_I_Rep_1 5 500.76580810546875 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 42.482 1 45.99 45.49 46.49 3.5079 0 0 0 0.40625 1 7862 7862 2.3027 0.24298 1 + 42955 29396 27185 27197 49298 49298 0.014003031290030776 SYFKRNVS 8 Unmodified _SYFKRNVS_ 0 0 0 REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|52|3|sense REV__L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|52|3|sense MSMS UPN48_class_I_Rep_3 7 500.3988037109375 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 42.539 1 46.18 45.68 46.68 3.6415 0 0 0 0.4044 1 7805 7805 4.756 2.1785 1 + 42956 29396 27185 27197 49299 49299 0.014003031290030776 SYFLHFEYY 9 Unmodified _SYFLHFEYY_ 0 0 0 L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|53|2|anti-sense L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|53|2|anti-sense L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|53|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 634.3132934570312 2 634.784764 1267.55498 0.53881 0.00034203 -0.52867 -0.00033559 0.010145 6.4402E-06 634.7843900976962 44.602 0.84143 48.239 47.542 48.383 3.6372 96 57 2 0 0 0 0.12281 1 8413 8413 4.3292 0.73274 1 90702 42957 13667 27186 27198 49300 49300 -0.0680998062218805 SYFPKILTF 9 Unmodified _SYFPKILTF_ 0 0 0 nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 MSMS UPN48_class_I_Rep_2 6 558.3114013671875 2 558.310418 1114.60628 NaN NaN NaN NaN NaN NaN NaN 76.786 1 80.398 79.898 80.898 3.6116 0 0 0 0.21832 1 18139 18139 15.248 1.3424 1 42958 3120 27187 27199 49301 49301 0.05356388142513424 SYFPKILTF 9 Unmodified _SYFPKILTF_ 0 0 0 nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 MULTI-MSMS UPN48_class_I_Rep_3 7 558.3106079101562 2 558.310418 1114.60628 0.45425 0.00025361 -0.13818 -7.7149E-05 0.31607 0.00017647 558.8118272383465 76.821 0.091492 80.404 80.346 80.437 3.5831 16 9 2 0 0 0 0.279 1 18101 18101 15.248 1.3424 1 68039 42959 3120 27187 27199 49302 49302 0.05356388142513424 SYFSSAVDVKF 11 Unmodified _SYFSSAVDVKF_ 0 0 0 L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|171|3|anti-sense L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|171|3|anti-sense L1M4_dup14475|chr12:14451032-14453629:-|1.642632772225811|0.1012217803343509|4.02|151.0|171|3|anti-sense MSMS UPN48_class_I_Rep_2 6 625.3078002929688 2 625.308603 1248.60265 NaN NaN NaN NaN NaN NaN NaN 62.173 1 65.646 65.146 66.146 3.4738 0 0 0 0.38417 1 13871 13871 2.4985 0 1 42960 8841 27188 27200 49303 49303 -0.011703264220159326 SYFYFYCF 8 Unmodified _SYFYFYCF_ 0 0 0 REV__L1MEc_dup6858|chr6:37947919-37948486:-|1.3316650932505545|0.0037613474227518|8.47|150.0|35|2|anti-sense REV__L1MEc_dup6858|chr6:37947919-37948486:-|1.3316650932505545|0.0037613474227518|8.47|150.0|35|2|anti-sense MSMS UPN48_class_I_Rep_3 7 570.2431030273438 2 570.230779 1138.447 NaN NaN NaN NaN NaN NaN NaN 22.998 1 26.748 26.248 27.248 3.7507 0 0 0 0.40738 1 2439 2439 0.79363 0 1 + 42961 28473 27189 27201 49304 49304 -0.11668068477115412 SYFYHKMF 8 Unmodified _SYFYHKMF_ 0 0 0 L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|152|2|anti-sense L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|152|2|anti-sense L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|152|2|anti-sense MSMS UPN47_class_I_Rep_1 2 561.7573852539062 2 561.757495 1121.50044 NaN NaN NaN NaN NaN NaN NaN 35.038 1 38.724 38.224 39.224 3.6859 0 0 0 0.40604 1 6379 6379 2.5775 0.27475 1 42962 11149 27190 27202 49305 49305 -0.055452709746077744 SYGATPYLF 9 Unmodified _SYGATPYLF_ 0 0 0 nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3 nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3 nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3 MULTI-MSMS UPN48_class_I_Rep_2 6 510.2488708496094 2 509.74765 1017.48075 0.3334 0.00016995 -0.05004 -2.5508E-05 0.28336 0.00014444 509.7476108063495 67.146 0.79251 70.642 70.31 71.102 3.4964 99 57 3 0 0 0 0.17468 3 15441 15441;15464;15491 23.148 0 1 168600 42963 16816 27191 27203 49306;49307;49308 49306 -0.027293237137314463 SYGATPYLF 9 Unmodified _SYGATPYLF_ 0 0 0 nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3 nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3 nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3 MULTI-MSMS UPN48_class_I_Rep_3 7 509.7478942871094 2 509.74765 1017.48075 0.32802 0.00016721 -0.2204 -0.00011235 0.10761 5.4855E-05 509.74753806718354 67.112 0.71533 70.619 70.235 70.951 3.5077 97 53 2 0 0 0 0.17468 2 15225 15225;15335 23.148 0 1 157030 42964 16816 27191 27203 49309;49310 49309 -0.027293237137314463 SYGESKMKW 9 Unmodified _SYGESKMKW_ 0 0 0 L1MC5a_dup2450|chr2:201202909-201203249:-|1.0228476594710667|0.0507789834666741|4.33|151.0|11|3|sense L1MC5a_dup2450|chr2:201202909-201203249:-|1.0228476594710667|0.0507789834666741|4.33|151.0|11|3|sense L1MC5a_dup2450|chr2:201202909-201203249:-|1.0228476594710667|0.0507789834666741|4.33|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 558.2652587890625 2 558.263142 1114.51173 NaN NaN NaN NaN NaN NaN NaN 72.957 1 76.494 75.994 76.994 3.5373 0 0 0 0.2408 1 17043 17043 13.906 5.1606 1 42965 11735 27192 27204 49311 49311 -0.04094493671118471 SYGIENLQLKK 11 Unmodified _SYGIENLQLKK_ 0 0 0 ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF MSMS UPN48_class_I_Rep_2 6 646.866455078125 2 646.864077 1291.7136 NaN NaN NaN NaN NaN NaN NaN 46.527 1 50.277 49.777 50.777 3.7494 0 0 0 0.38417 1 9102 9102 2.9952 0 1 42966 6684 27193 27205 49312 49312 0.07941313286073637 SYGKKKRAR 9 Unmodified _SYGKKKRAR_ 0 0 0 L1PA5_dup6357|chr9:91282637-91285469:+|2.3089187402591143|0.3922222261460613|2.56|151.0|41|2|sense L1PA5_dup6357|chr9:91282637-91285469:+|2.3089187402591143|0.3922222261460613|2.56|151.0|41|2|sense L1PA5_dup6357|chr9:91282637-91285469:+|2.3089187402591143|0.3922222261460613|2.56|151.0|41|2|sense MSMS UPN46_class_I_Rep_3 1 547.3328857421875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 92.679 1 92.679 92.179 93.179 0 0 0 0 0.4007 1 22438 22438 0.52476 0 1 42967 14507 27194 27206 49313 49313 0.10899051448268438 SYGPLITQL 9 Unmodified _SYGPLITQL_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|53|1|sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|53|1|sense MSMS UPN47_class_I_Rep_2 3 496.2773742675781 2 496.276575 990.538597 NaN NaN NaN NaN NaN NaN NaN 56.981 1 60.282 59.782 60.782 3.3009 0 0 0 0.38639 1 13085 13085 3.9444 1.6417 1 + 42968 29225 27195 27207 49314 49314 0.04294938211717181 SYGPLITQL 9 Unmodified _SYGPLITQL_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|53|1|sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|53|1|sense MSMS UPN47_class_I_Rep_3 4 496.2771301269531 2 496.276575 990.538597 NaN NaN NaN NaN NaN NaN NaN 56.909 1 60.081 59.581 60.581 3.1721 0 0 0 0.38639 1 13116 13116 3.9444 0.3479 1 + 42969 29225 27195 27207 49315 49315 0.04294938211717181 SYGRSLSKSP 10 Unmodified _SYGRSLSKSP_ 0 0 0 REV__MER77_dup851|chr12:57368337-57368926:+|2.671933252640949|0.0152417511606574|7.45|150.0|22|1|anti-sense REV__MER77_dup851|chr12:57368337-57368926:+|2.671933252640949|0.0152417511606574|7.45|150.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 541.7881469726562 2 541.285463 1080.55637 -0.09406 -5.0913E-05 -0.50268 -0.00027209 -0.59674 -0.00032301 541.2850747552363 14.899 0.38589 18.374 18.234 18.619 3.475 94 43 3 0 0 0 0.56189 1 653 653 2.4985 1.0166 1 118190 + 42970 31560 27196 27208 49316 49316 0.019316534665676954 SYGRSLSKSP 10 Unmodified _SYGRSLSKSP_ 0 0 0 REV__MER77_dup851|chr12:57368337-57368926:+|2.671933252640949|0.0152417511606574|7.45|150.0|22|1|anti-sense REV__MER77_dup851|chr12:57368337-57368926:+|2.671933252640949|0.0152417511606574|7.45|150.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 541.2855224609375 2 541.285463 1080.55637 0.0064188 3.4744E-06 -0.56831 -0.00030762 -0.56189 -0.00030415 541.2850568587362 15.005 0.47776 18.391 18.254 18.731 3.3864 94 52 3 0 0 0 0.55448 1 687 687 4.897 1.3005 1 101250 + 42971 31560 27196 27208 49317 49317 0.019316534665676954 SYGRSLSKSP 10 Unmodified _SYGRSLSKSP_ 0 0 0 REV__MER77_dup851|chr12:57368337-57368926:+|2.671933252640949|0.0152417511606574|7.45|150.0|22|1|anti-sense REV__MER77_dup851|chr12:57368337-57368926:+|2.671933252640949|0.0152417511606574|7.45|150.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 541.2848510742188 2 541.285463 1080.55637 -0.42919 -0.00023231 -0.21318 -0.00011539 -0.64237 -0.0003477 541.2852395157848 15.05 0.38012 18.416 18.289 18.67 3.3659 79 43 2 0 0 0 0.51021 2 717 690;717 10.8 3.6978 1 103590 + 42972 31560 27196 27208 49318;49319 49319 0.019316534665676954 SYGTHSWY 8 Unmodified _SYGTHSWY_ 0 0 0 MLT1C_dup11823|chr10:26554882-26555045:-|2.1151822724523983|0.0136603060121395|7.27|151.0|1|1|sense MLT1C_dup11823|chr10:26554882-26555045:-|2.1151822724523983|0.0136603060121395|7.27|151.0|1|1|sense MLT1C_dup11823|chr10:26554882-26555045:-|2.1151822724523983|0.0136603060121395|7.27|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 500.711669921875 2 500.711599 999.408646 NaN NaN NaN NaN NaN NaN NaN 43.418 1 47.056 46.556 47.556 3.6385 0 0 0 0.39624 1 8076 8076 9.3474 0 1 42973 16292 27197 27209 49320 49320 -0.09108238067437924 SYGTTKSPNRQ 11 Unmodified _SYGTTKSPNRQ_ 0 0 0 L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|113|3|sense L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|113|3|sense L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|113|3|sense MSMS UPN48_class_I_Rep_3 7 619.81201171875 2 619.809833 1237.60511 NaN NaN NaN NaN NaN NaN NaN 62.661 1 66.171 65.671 66.671 3.5104 0 0 0 0.38417 1 13946 13946 2.4985 0.41248 1 42974 13880 27198 27210 49321 49321 -0.004184779643310321 SYGVRHPQLS 10 Unmodified _SYGVRHPQLS_ 0 0 0 REV__ENST00000409993.6_1_11:118967320-118967512:-|nuORF REV__ENST00000409993.6_1_11:118967320-118967512:-|nuORF MSMS UPN48_class_I_Rep_1 5 572.2964477539062 2 572.298904 1142.58326 NaN NaN NaN NaN NaN NaN NaN 57.501 1 60.995 60.495 61.495 3.4942 0 0 0 0.53105 1 12465 12465 2.9952 0.10602 1 + 42975 22188 27199 27211 49322 49322 0.017667620777501725 SYGWVAHFF 9 Unmodified _SYGWVAHFF_ 0 0 0 L1MC2_dup2027|chr5:142774398-142775470:-|1.3891000513897562|0.0184734995903521|6.23|151.0|49|1|anti-sense L1MC2_dup2027|chr5:142774398-142775470:-|1.3891000513897562|0.0184734995903521|6.23|151.0|49|1|anti-sense L1MC2_dup2027|chr5:142774398-142775470:-|1.3891000513897562|0.0184734995903521|6.23|151.0|49|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.7636108398438 2 557.261259 1112.50797 0.4899 0.000273 -0.74473 -0.00041501 -0.25483 -0.00014201 557.7633829103728 72.833 0.57983 76.398 76.056 76.636 3.5645 68 49 3 0 0 0 0.3898 1 17030 17030 8.5933 1.304 1 167730 42976 11232 27200 27212 49323 49323 -0.043787953826722514 SYHFDVPLQ 9 Unmodified _SYHFDVPLQ_ 0 0 0 REV__ENST00000323116.9_2_3:182547466-182547517:+|nuORF REV__ENST00000323116.9_2_3:182547466-182547517:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 553.2684936523438 2 553.269281 1104.52401 0.61888 0.00034241 -0.11078 -6.1291E-05 0.5081 0.00028112 553.7706292502145 64.056 0.59547 67.514 67.178 67.774 3.4578 107 42 3 0 0 0 0.42249 1 14379 14379 6.7232 6.7232 1 622470 + 42977 21747 27201 27213 49324 49324 -0.02407133936435457 SYHFFEYL 8 Unmodified _SYHFFEYL_ 0 0 0 L1MDa_dup5243|chr13:21429358-21430968:-|8.22458477650681|0.1050164229974785|6.29|151.0|64|1|anti-sense L1MDa_dup5243|chr13:21429358-21430968:-|8.22458477650681|0.1050164229974785|6.29|151.0|64|1|anti-sense L1MDa_dup5243|chr13:21429358-21430968:-|8.22458477650681|0.1050164229974785|6.29|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.26123046875 2 553.2531 1104.49165 NaN NaN NaN NaN NaN NaN NaN 59.13 1 62.411 61.911 62.911 3.2818 0 0 0 0.40625 1 13741 13741 2.3027 0 1 42978 12135 27202 27214 49325 49325 -0.056419213394292456 SYHPGRKR 8 Unmodified _SYHPGRKR_ 0 0 0 nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21 nc|ENSG00000214193|A4FU49|SH3D21 nc|ENSG00000214193|A4FU49|SH3D21 MSMS UPN48_class_I_Rep_1 5 500.7654724121094 2 500.7754 999.536246 NaN NaN NaN NaN NaN NaN NaN 40.862 1 44.368 43.868 44.868 3.506 0 0 0 0.40604 1 7380 7380 2.5775 0 1 42979 5611 27203 27215 49326 49326 0.03645947317284026 SYHPYGSAAY 10 Unmodified _SYHPYGSAAY_ 0 0 0 ENSG00000170561|ENST00000302057|IRX2 ENSG00000170561|ENST00000302057|IRX2 ENSG00000170561|ENST00000302057|IRX2 MULTI-MSMS UPN47_class_I_Rep_3 4 558.2437133789062 2 558.243264 1114.47197 0.38291 0.00021376 0.091274 5.0953E-05 0.47419 0.00026471 558.7449530305341 61.26 0.50424 64.425 64.208 64.712 3.1651 47 41 2 0 0 0 0.54466 1 14451 14451 6.2058 0.47393 1 76922 42980 4477 27204 27216 49327 49327 -0.08068297350178 SYIAFIMLM 9 Unmodified _SYIAFIMLM_ 0 0 0 L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|92|2|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|92|2|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|92|2|anti-sense MSMS UPN48_class_I_Rep_1 5 544.769775390625 2 544.779582 1087.54461 NaN NaN NaN NaN NaN NaN NaN 61.666 1 65.133 64.633 65.633 3.4678 0 0 0 0.1724 1 13739 13739 18.135 4.2289 1 42981 10410 27205 27217 49328 49328 0.004339971273566334 SYIEEPFI 8 Unmodified _SYIEEPFI_ 0 0 0 L1ME4b_dup14165|chr11:68503772-68504152:+|1.2005848787765985|0.0247352953156504|5.6|151.0|22|2|anti-sense L1ME4b_dup14165|chr11:68503772-68504152:+|1.2005848787765985|0.0247352953156504|5.6|151.0|22|2|anti-sense L1ME4b_dup14165|chr11:68503772-68504152:+|1.2005848787765985|0.0247352953156504|5.6|151.0|22|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.74884033203125 2 499.247483 996.480414 0.26204 0.00013082 -0.084137 -4.2005E-05 0.1779 8.8818E-05 499.2474502384721 88.583 0.071167 92.239 92.212 92.284 3.6563 11 6 2 0 0 0 0.82752 1 22155 22155 8.5933 0.68312 1 47019 42982 12888 27206 27218 49329 49329 -0.017967434335673715 SYIEYEVRL 9 Unmodified _SYIEYEVRL_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.30419921875 2 586.303321 1170.59209 0.44983 0.00026374 -0.60808 -0.00035652 -0.15825 -9.2782E-05 586.3033296975956 70.8 0.17613 74.012 73.922 74.098 3.2113 22 13 2 0 0 0 0.32682 1 17345 17345 12.241 0 1 132260 + 42983 26126 27207 27219 49330 49330 0.013616909235679486 SYIEYEVRL 9 Unmodified _SYIEYEVRL_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 586.303321 1170.59209 0.35654 0.00020904 0.06139 3.5993E-05 0.41793 0.00024503 586.303317422366 70.174 0.094185 73.545 73.493 73.587 3.3713 -0.2644 6.3784E-05 NaN 12.241 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 242450 + 42984 26126 27207 27219 0.013616909235679486 SYIEYEVRL 9 Unmodified _SYIEYEVRL_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 586.303321 1170.59209 0.41274 0.00024199 0.17373 0.00010186 0.58647 0.00034385 586.3034425909217 70.59 0.23059 73.873 73.731 73.962 3.2828 0.062656 0.00019551 NaN 12.241 41 21 3 NaN NaN NaN NaN 0 NaN NaN 0 196210 + 42985 26126 27207 27219 0.013616909235679486 SYIEYEVRL 9 Unmodified _SYIEYEVRL_ 0 0 0 REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense REV__L1MB7_dup11456|chr9:137639019-137639717:-|2.815879366203566|0.0165487022739034|7.41|151.0|50|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 586.303321 1170.59209 0.44983 0.00026374 -0.60808 -0.00035652 -0.15825 -9.2782E-05 586.3033296975956 70.8 0.17613 74.012 73.922 74.098 3.2113 0.20174 -0.00072124 NaN 12.241 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 132260 + 42986 26126 27207 27219 0.013616909235679486 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.3038330078125 2 539.302593 1076.59063 0.37063 0.00019988 0.10344 5.5786E-05 0.47407 0.00025567 539.8040955341833 91.024 0.21213 94.65 94.523 94.735 3.626 40 26 2 0 0 0 0.16559 1 21859 21859 24.021 0 1 179120 42987 4211 27208 27220 49331 49331 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.3023681640625 2 539.302593 1076.59063 0.36707 0.00019796 -0.10395 -5.6061E-05 0.26312 0.0001419 539.3025074466392 92.787 0.27145 96.411 96.189 96.461 3.624 66 37 2 0 0 0 0.16559 1 22287 22287 24.021 0 1 160110 42988 4211 27208 27220 49332 49332 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.3023071289062 2 539.302593 1076.59063 0.36667 0.00019775 0.17072 9.2072E-05 0.5374 0.00028982 539.3026229577504 92.932 0.17227 96.556 96.452 96.625 3.624 43 22 2 0 0 0 0.13244 2 22330 22330;22345 27.629 0 1 157240 42989 4211 27208 27220 49333;49334 49333 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS UPN48_class_I_Rep_1 5 539.3030395507812 2 539.302593 1076.59063 0.36686 0.00019785 1.3429 0.00072423 1.7098 0.00092208 539.3033805974542 93.097 0.24351 96.721 96.625 96.868 3.624 47 31 2 0 0 0 0.17897 1 22376 22376 22.736 0 1 112720 42990 4211 27208 27220 49335 49335 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS UPN48_class_I_Rep_2 6 539.3045043945312 2 539.302593 1076.59063 0.469 0.00025293 0.32189 0.0001736 0.79089 0.00042653 539.3028368945287 90.877 0.15579 94.632 94.539 94.694 3.7554 36 22 2 0 0 0 0.16559 1 21626 21626 24.021 0 1 142810 42991 4211 27208 27220 49336 49336 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS UPN48_class_I_Rep_3 7 539.3032836914062 2 539.302593 1076.59063 0.56847 0.00030658 0.50841 0.00027419 1.0769 0.00058076 539.302835637205 90.934 0.049881 94.781 94.744 94.794 3.847 11 6 3 0 0 0 0.16559 1 21567 21567 24.021 0 1 162960 42992 4211 27208 27220 49337 49337 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 539.302593 1076.59063 0.37066 0.0001999 -0.034387 -1.8545E-05 0.33628 0.00018135 539.3024597826368 90.868 0.12534 94.494 94.39 94.515 3.626 -0.087514 -0.00037265 NaN 24.021 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 80120 42993 4211 27208 27220 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 539.302593 1076.59063 0.46884 0.00025285 0.25881 0.00013958 0.72765 0.00039242 539.3025881932449 90.715 0.15195 94.47 94.401 94.552 3.7554 -0.11166 -5.6408E-05 NaN 24.021 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 64523 42994 4211 27208 27220 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 539.302593 1076.59063 0.5697 0.00030724 -0.12292 -6.6293E-05 0.44678 0.00024095 539.3023824937095 90.824 0.25285 94.671 94.491 94.744 3.847 0.01973 -0.00025197 NaN 24.021 62 35 2 NaN NaN NaN NaN 0 NaN NaN 0 76054 42995 4211 27208 27220 0.0554010162547911 SYIRLVQQLKI 11 Unmodified _SYIRLVQQLKI_ 0 0 0 L1MD1_dup3961|chrX:73953198-73953816:+|3.656385575861501|0.1705507129230436|4.42|151.0|1|1|sense L1MD1_dup3961|chrX:73953198-73953816:+|3.656385575861501|0.1705507129230436|4.42|151.0|1|1|sense L1MD1_dup3961|chrX:73953198-73953816:+|3.656385575861501|0.1705507129230436|4.42|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 454.7632141113281 3 454.281883 1359.82382 0.079186 3.5973E-05 -1.7773 -0.0008074 -1.6981 -0.00077142 454.2798364769749 44.99 0.083717 48.752 48.703 48.787 3.7617 6 5 2 0 0 0 22.551 1 8646 8646 1.3296 0 1 43167 42996 11940 27209 27221 49338 49338 0.158301583451248 SYIRSNRY 8 Unmodified _SYIRSNRY_ 0 0 0 REV__L1ME3F_dup1490|chr5:80459649-80460810:-|1.0422198267277818|0.1349385779790775|2.95|151.0|42|3|sense REV__L1ME3F_dup1490|chr5:80459649-80460810:-|1.0422198267277818|0.1349385779790775|2.95|151.0|42|3|sense MSMS UPN47_class_I_Rep_1 2 529.7723388671875 2 529.772522 1057.53049 NaN NaN NaN NaN NaN NaN NaN 25.351 1 29.1 28.6 29.6 3.7495 0 0 0 0.40472 1 3463 3463 4.3292 0 1 + 42997 28167 27210 27222 49339 49339 0.004028040149478329 SYIRSVIY 8 Unmodified _SYIRSVIY_ 0 0 0 L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|29|2|anti-sense L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|29|2|anti-sense L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|29|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 500.1795959472656 2 500.776742 999.538931 0.20164 0.00010098 -4.4452 -0.002226 -4.2435 -0.0021251 500.7748849703079 43.711 0.040588 47.221 47.189 47.23 3.5103 6 4 2 0 0 0 0.72333 1 8232 8232 5.7604 0 1 92128 42998 11028 27211 27223 49340 49340 0.03914357931557788 SYIVWSFVF 9 Unmodified _SYIVWSFVF_ 0 0 0 L1MB7_dup18000|chr15:40722708-40723834:+|1.10112589673502|0.1017350577627871|3.44|151.0|47|1|anti-sense L1MB7_dup18000|chr15:40722708-40723834:+|1.10112589673502|0.1017350577627871|3.44|151.0|47|1|anti-sense L1MB7_dup18000|chr15:40722708-40723834:+|1.10112589673502|0.1017350577627871|3.44|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.2946166992188 2 574.294768 1146.57498 0.47567 0.00027317 -0.19062 -0.00010947 0.28505 0.0001637 574.2945780557941 77.115 0.28735 80.726 80.525 80.812 3.6116 54 27 3 0 0 0 0.33654 1 18206 18206 11.64 1.5664 1 491450 42999 10755 27212 27224 49341 49341 0.007558151084140263 SYIVWSFVF 9 Unmodified _SYIVWSFVF_ 0 0 0 L1MB7_dup18000|chr15:40722708-40723834:+|1.10112589673502|0.1017350577627871|3.44|151.0|47|1|anti-sense L1MB7_dup18000|chr15:40722708-40723834:+|1.10112589673502|0.1017350577627871|3.44|151.0|47|1|anti-sense L1MB7_dup18000|chr15:40722708-40723834:+|1.10112589673502|0.1017350577627871|3.44|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 574.2948608398438 2 574.294768 1146.57498 0.51638 0.00029655 -0.5116 -0.00029381 0.0047834 2.7471E-06 574.7959570023964 77.079 0.15874 80.681 80.554 80.713 3.6016 25 11 3 0 0 0 0.33654 1 18169 18169 11.64 0.81637 1 295750 43000 10755 27212 27224 49342 49342 0.007558151084140263 SYIYTFNQL 9 Unmodified _SYIYTFNQL_ 0 0 0 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 MSMS UPN48_class_I_Rep_3 7 574.7849731445312 2 574.784764 1147.55498 NaN NaN NaN NaN NaN NaN NaN 73.068 1 76.605 76.105 77.105 3.5373 0 0 0 0.37692 1 17076 17076 6.2058 0.47393 1 43001 3952 27213 27225 49343 49343 -0.012899806221867038 SYKHLYTKPI 10 Unmodified _SYKHLYTKPI_ 0 0 0 REV__PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|74|3|anti-sense REV__PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_1 5 625.3521118164062 2 625.350606 1248.68666 NaN NaN NaN NaN NaN NaN NaN 69.044 1 72.498 71.998 72.998 3.4548 0 0 0 0.53105 1 15987 15987 2.9952 0.49676 1 + 43002 32152 27214 27226 49344 49344 0.07226249465543333 SYKIHFSLY 9 Unmodified _SYKIHFSLY_ 0 0 0 HSMAR1_dup372|chr9:5888297-5889504:+|1.068494137630593|0.1086367997346823|3.3|151.0|54|2|anti-sense HSMAR1_dup372|chr9:5888297-5889504:+|1.068494137630593|0.1086367997346823|3.3|151.0|54|2|anti-sense HSMAR1_dup372|chr9:5888297-5889504:+|1.068494137630593|0.1086367997346823|3.3|151.0|54|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 579.2611694335938 2 579.303124 1156.5917 0.33554 0.00019438 1.7624 0.001021 2.0979 0.0012153 579.8053238634052 68.241 0.14294 71.606 71.532 71.675 3.3646 11 9 2 0 0 0 0.12281 1 16450 16450 4.3292 0.38484 1 39843 43003 8427 27215 27227 49345 49345 0.0196631599437751 SYKIKQQTI 9 Unmodified _SYKIKQQTI_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS UPN48_class_I_Rep_2 6 554.8220825195312 2 554.821681 1107.62881 0.6039 0.00033506 0.13685 7.5925E-05 0.74075 0.00041098 554.8217192025221 54.729 0.69914 58.311 57.932 58.631 3.5817 81 44 2 0 0 0 0.24936 1 11645 11645 17.113 0 1 226930 + 43004 19613 27216 27228 49346 49346 0.07929987540137517 SYKIKQQTI 9 Unmodified _SYKIKQQTI_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS UPN48_class_I_Rep_3 7 554.8223266601562 2 554.821681 1107.62881 0.2593 0.00014387 0.40033 0.00022211 0.65963 0.00036598 554.8218310363584 54.711 0.67411 58.28 57.899 58.573 3.5694 89 45 3 0 0 0 0.24936 2 11437 11437;11559 17.113 5.7505 1 237100 + 43005 19613 27216 27228 49347;49348 49347 0.07929987540137517 SYKPTLKY 8 Unmodified _SYKPTLKY_ 0 0 0 Tigger15a_dup1201|chr3:172176071-172176320:+|1.9146800718640355|0.011287638607938|7.41|151.0|1|1|sense Tigger15a_dup1201|chr3:172176071-172176320:+|1.9146800718640355|0.011287638607938|7.41|151.0|1|1|sense Tigger15a_dup1201|chr3:172176071-172176320:+|1.9146800718640355|0.011287638607938|7.41|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 500.280517578125 2 500.279118 998.543683 NaN NaN NaN NaN NaN NaN NaN 43.349 1 47.11 46.61 47.61 3.7617 0 0 0 0.40364 1 8135 8135 5.7604 0 1 43006 33234 27217 27229 49349 49349 0.04435242074339385 SYKQEHITPI 10 Unmodified _SYKQEHITPI_ 0 0 0 REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|151|1|anti-sense REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|151|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 405.8842468261719 3 405.883789 1214.62954 0.14914 6.0532E-05 0.95379 0.00038713 1.1029 0.00044766 405.88408092874204 67.454 0.14707 70.962 70.866 71.013 3.5077 22 14 2 0 0 0 0.56296 1 15400 15400 1.7423 0.96574 1 104410 + 43007 28913 27218 27230 49350 49350 0.030807821891812637 SYKRTFSEP 9 Unmodified _SYKRTFSEP_ 0 0 0 nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;ENST00000491309.5_1_9:134400429-134401843:-|nuORF nc|ENSG00000130717|Q9HA47-3|UCK1 nc|ENSG00000130717|Q9HA47-3|UCK1 MULTI-MSMS UPN47_class_I_Rep_1 2 558.283935546875 2 557.780013 1113.54547 0.23884 0.00013322 -0.27237 -0.00015192 -0.033523 -1.8698E-05 557.7800174182983 49.466 1.7106 53.125 52.626 54.337 3.6592 264 100 4 0 0 0 0.48643 1 11119 11119 2.0598 2.0598 1 1646500 43008 2671 27219 27231 49351 49351 -0.006757489077244827 SYKRYRHT 8 Unmodified _SYKRYRHT_ 0 0 0 L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|4|1|sense L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|4|1|sense L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 555.322265625 2 555.793789 1109.57303 NaN NaN NaN NaN NaN NaN NaN 40.923 1 44.429 43.929 44.929 3.506 0 0 0 0.4044 1 7397 7397 4.756 1.1595 1 43009 9774 27220 27232 49352 49352 0.02262199143183352 SYKVLPGRRS 10 Unmodified _SYKVLPGRRS_ 0 0 0 REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 581.838623046875 2 581.838197 1161.66184 0.51597 0.00030021 0.8683 0.00050521 1.3843 0.00080542 581.8384841013426 109.49 0.060043 109.49 109.47 109.53 0 5 3 2 0 0 0 0.84575 1 26904 26904 2.9952 0.26005 1 703710 + 43010 18390 27221 27233 49353 49353 0.08747614382855318 SYLAFLQR 8 Unmodified _SYLAFLQR_ 0 0 0 REV__ENSG00000261701|ENST00000540303|HPR REV__ENSG00000261701|ENST00000540303|HPR MSMS UPN48_class_I_Rep_3 7 499.2775573730469 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 39.147 1 42.803 42.303 43.303 3.6557 0 0 0 0.40404 1 6811 6811 5.2307 0 1 + 43011 21401 27222 27234 49354 49354 0.04085777651425815 SYLAPLFVH 9 Unmodified _SYLAPLFVH_ 0 0 0 REV__MLT2A2_dup241|chr1:243289045-243289490:-|1.320267927406906|0.0166278907082709|6.31|151.0|30|3|anti-sense REV__MLT2A2_dup241|chr1:243289045-243289490:-|1.320267927406906|0.0166278907082709|6.31|151.0|30|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.677978515625 2 523.78711 1045.55967 0.38018 0.00019913 -0.45948 -0.00024067 -0.079302 -4.1537E-05 523.7867119435689 76.444 0.16485 80.045 79.982 80.147 3.6011 26 17 2 0 0 0 0.44858 1 18053 18053 5.2307 1.6342 1 84667 + 43012 31810 27223 27235 49355 49355 0.038709483112370435 SYLAPLFVH 9 Unmodified _SYLAPLFVH_ 0 0 0 REV__MLT2A2_dup241|chr1:243289045-243289490:-|1.320267927406906|0.0166278907082709|6.31|151.0|30|3|anti-sense REV__MLT2A2_dup241|chr1:243289045-243289490:-|1.320267927406906|0.0166278907082709|6.31|151.0|30|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 523.78711 1045.55967 0.46881 0.00024556 -0.39209 -0.00020537 0.076714 4.0182E-05 523.7868084298348 76.78 0.088921 80.363 80.326 80.414 3.5831 0.15897 4.4983E-05 NaN 5.2307 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 54560 + 43013 31810 27223 27235 0.038709483112370435 SYLCDIIRY 9 Unmodified _SYLCDIIRY_ 0 0 0 L1MA9_dup9928|chrX:110056911-110058237:-|1.4689676103795184|0.021824552053597|6.07|150.0|87|3|anti-sense L1MA9_dup9928|chrX:110056911-110058237:-|1.4689676103795184|0.021824552053597|6.07|150.0|87|3|anti-sense L1MA9_dup9928|chrX:110056911-110058237:-|1.4689676103795184|0.021824552053597|6.07|150.0|87|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 573.28857421875 2 573.286617 1144.55868 0.38657 0.00022161 0.75591 0.00043335 1.1425 0.00065496 573.2869866264654 46.888 0.53795 50.637 50.396 50.934 3.7494 70 39 2 0 0 0 0.42249 1 9253 9253 6.7232 0.99131 1 193400 43014 10163 27224 27236 49356 49356 -0.007816341199941235 SYLCERIYV 9 Unmodified _SYLCERIYV_ 0 0 0 REV__L1MC4_dup4106|chr3:11437584-11437942:-|1.769438195271959|0.0206848214554069|6.42|151.0|11|3|sense REV__L1MC4_dup4106|chr3:11437584-11437942:-|1.769438195271959|0.0206848214554069|6.42|151.0|11|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 573.2860107421875 2 573.286617 1144.55868 0.41843 0.00023988 -0.47075 -0.00026988 -0.052325 -2.9997E-05 573.2861454980656 63.422 0.37653 63.422 63.304 63.681 0 98 44 3 0 0 0 0.21527 1 14280 14280 19.257 0 1 1095800 + 43015 26912 27225 27237 49357 49357 -0.007816341199941235 SYLDSVHFF 9 Unmodified _SYLDSVHFF_ 0 0 0 EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 557.76318359375 2 557.763832 1113.51311 0.50967 0.00028428 -0.5024 -0.00028022 0.0072687 4.0542E-06 557.7634411339667 73.05 0.39924 76.531 76.172 76.571 3.4812 46 28 2 0 0 0 0.13631 2 17158 17112;17158 26.884 7.937 1 127330 43016 1502 27226 27238 49358;49359 49359 -0.03910536310718271 SYLDSVHFF 9 Unmodified _SYLDSVHFF_ 0 0 0 EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant MSMS UPN48_class_I_Rep_1 5 557.765380859375 2 557.763832 1113.51311 NaN NaN NaN NaN NaN NaN NaN 115.47 1 119.1 118.6 119.6 3.6282 0 0 0 0.38299 1 28091 28091 4.756 0 1 43017 1502 27226 27238 49360 49360 -0.03910536310718271 SYLDSVHFF 9 Unmodified _SYLDSVHFF_ 0 0 0 EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant;ENSG00000100393|ENST00000263253|EP300 EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant EP300|p.M2269Ifs*33|1|0.09|ENSG00000100393|chr22:41178516-41178517|-/T|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 557.7642211914062 2 557.763832 1113.51311 0.46068 0.00025695 -0.6373 -0.00035546 -0.17662 -9.8511E-05 557.7633475780669 72.766 0.49248 76.303 76.17 76.662 3.5373 51 39 2 0 0 0 0.25207 1 16996 16996 16.942 5.302 1 115430 43018 1502 27226 27238 49361 49361 -0.03910536310718271 SYLENVDHF 9 Unmodified _SYLENVDHF_ 0 0 0 ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 ENST00000576872.1_1_17:4872867-4875829:-|nuORF ENST00000576872.1_1_17:4872867-4875829:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 562.2745971679688 2 562.256371 1122.49819 0.46676 0.00026244 0.40538 0.00022793 0.87214 0.00049036 562.2565003106473 52.978 0.41189 56.497 56.322 56.734 3.5192 43 28 2 0 0 0 0.14216 3 11025 11025;11071;11100 26.268 10.421 1 100340 43019 1867 27227 27239 49362;49363;49364 49362 -0.058160281787195345 SYLENVDHF 9 Unmodified _SYLENVDHF_ 0 0 0 ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 ENST00000576872.1_1_17:4872867-4875829:-|nuORF ENST00000576872.1_1_17:4872867-4875829:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 561.805419921875 2 562.256371 1122.49819 0.54356 0.00030562 0.30699 0.00017261 0.85055 0.00047823 562.2564722248226 52.816 0.33899 56.426 56.33 56.669 3.6098 30 19 2 0 0 0 0.10927 1 10999 10999 16.149 7.5558 1 150180 43020 1867 27227 27239 49365 49365 -0.058160281787195345 SYLENVDHF 9 Unmodified _SYLENVDHF_ 0 0 0 ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2 ENST00000576872.1_1_17:4872867-4875829:-|nuORF ENST00000576872.1_1_17:4872867-4875829:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 562.2745361328125 2 562.256371 1122.49819 0.28987 0.00016298 0.38264 0.00021514 0.67251 0.00037812 562.2563955558745 52.834 0.4488 56.432 56.229 56.678 3.5979 49 25 3 0 0 0 0.10568 4 10925 10925;10971;10977;11009 32.786 16.939 1 111760 43021 1867 27227 27239 49366;49367;49368;49369 49366 -0.058160281787195345 SYLGSFLPDV 10 Unmodified _SYLGSFLPDV_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS UPN47_class_I_Rep_1 2 549.2796020507812 2 549.279315 1096.54408 0.46371 0.00025471 0.030534 1.6772E-05 0.49425 0.00027148 549.2794922155251 81.676 0.29292 85.188 85.028 85.32 3.5122 42 30 2 0 0 0 0.51565 1 20421 20421 10.074 2.1638 1 144630 43022 1589 27228 27240 49370 49370 -0.00033382996502950846 SYLHWLLPLAA 11 Unmodified _SYLHWLLPLAA_ 0 0 0 REV__Tigger1_dup4511|chr5:157845855-157847224:+|3.9170084384178434|0.0190207579685902|7.69|151.0|18|2|sense REV__Tigger1_dup4511|chr5:157845855-157847224:+|3.9170084384178434|0.0190207579685902|7.69|151.0|18|2|sense MSMS UPN46_class_I_Rep_3 1 642.3622436523438 2 642.360973 1282.70739 NaN NaN NaN NaN NaN NaN NaN 107.95 1 107.95 107.45 108.45 0 0 0 0 0.38417 1 26342 26342 6.2058 0.9089 1 + 43023 32450 27229 27241 49371 49371 0.07734839845261376 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS UPN48_class_I_Rep_1 5 566.8110961914062 2 566.811116 1131.60768 NaN NaN NaN NaN NaN NaN NaN 51.438 1 54.962 54.462 55.462 3.5243 0 0 0 0.078496 1 10609 10609 29.082 16.55 1 43024 3340 27230 27242 49372 49372 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN48_class_I_Rep_3 7 566.8104248046875 2 566.811116 1131.60768 0.3275 0.00018563 0.032243 1.8276E-05 0.35974 0.00020391 566.8111291194925 51.111 0.79977 54.722 54.365 55.164 3.6105 88 54 2 0 0 0 0.17897 1 10576 10576 22.736 12.662 1 179780 43025 3340 27230 27242 49373 49373 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 566.811116 1131.60768 0.42629 0.00024163 0.026595 1.5074E-05 0.45289 0.0002567 566.8111561844851 51.104 0.73121 54.629 54.293 55.024 3.5246 -0.10347 -2.7283E-05 NaN 22.736 66 45 2 NaN NaN NaN NaN 0 NaN NaN 0 190450 43026 3340 27230 27242 0.04714022231269155 SYLPFTEAF 9 Unmodified _SYLPFTEAF_ 0 0 0 ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron;nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 537.7608642578125 2 537.760758 1073.50696 0.45823 0.00024642 -0.64417 -0.00034641 -0.18594 -9.9992E-05 537.7604170996251 83.719 0.51591 87.4 87.168 87.684 3.6814 78 52 2 0 0 0 0.027484 1 19903 19903 58.679 42.832 1 245040 43027 3931 27231 27243 49374 49374 -0.026850545422576033 SYLPFTEAF 9 Unmodified _SYLPFTEAF_ 0 0 0 ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron;nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron MULTI-MATCH UPN48_class_I_Rep_1 5 2 537.760758 1073.50696 0.37173 0.0001999 -0.59835 -0.00032177 -0.22662 -0.00012187 537.7604271127083 83.838 0.10629 87.435 87.351 87.457 3.5973 0.0053024 3.9677E-05 NaN 58.679 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 48931 43028 3931 27231 27243 -0.026850545422576033 SYLPFTEAF 9 Unmodified _SYLPFTEAF_ 0 0 0 ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron;nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron ENSG00000162430.17,SELENON,chr1,+,I1.1,25800414,25801042|23|6.32|1|intron MULTI-MATCH UPN48_class_I_Rep_3 7 2 537.760758 1073.50696 0.60133 0.00032337 -0.6306 -0.00033911 -0.029276 -1.5744E-05 537.7603489125332 83.726 0.58749 87.454 87.175 87.763 3.7281 0.024121 4.9871E-06 NaN 58.679 129 69 3 NaN NaN NaN NaN 0 NaN NaN 0 180550 43029 3931 27231 27243 -0.026850545422576033 SYLPYYKLGT 10 Unmodified _SYLPYYKLGT_ 0 0 0 L1M5_dup48216|chr17:30794373-30794515:+|1.224193517418534|0.3895360671500972|1.65|151.0|11|2|anti-sense L1M5_dup48216|chr17:30794373-30794515:+|1.224193517418534|0.3895360671500972|1.65|151.0|11|2|anti-sense L1M5_dup48216|chr17:30794373-30794515:+|1.224193517418534|0.3895360671500972|1.65|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_3 7 602.816162109375 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 73.381 1 76.918 76.418 77.418 3.5373 0 0 0 0.53105 1 17165 17165 3.2813 0 1 43030 9188 27232 27244 49375 49375 0.02391165445965271 SYLQKWWF 8 Unmodified _SYLQKWWF_ 0 0 0 REV__nc|ENSG00000166927|Q9GZW8-2|MS4A7 REV__nc|ENSG00000166927|Q9GZW8-2|MS4A7 MSMS UPN48_class_I_Rep_1 5 579.29296875 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 71.882 1 75.348 74.848 75.848 3.466 0 0 0 0.40738 1 16838 16838 0.79363 0 1 + 43031 20198 27233 27245 49376 49376 -0.0014564931450422591 SYLRKPISV 9 Unmodified _SYLRKPISV_ 0 0 0 REV__Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|14|2|sense REV__Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|14|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 531.777099609375 2 531.818941 1061.62333 0.32336 0.00017197 -2.5416 -0.0013517 -2.2182 -0.0011797 531.8174141525687 81.07 0.072418 81.07 81.028 81.101 0 10 6 2 0 0 0 0.12462 1 19129 19129 1.8442 1.1539 1 165420 + 43032 32172 27234 27246 49377 49377 0.09498308748311501 SYLRKPISV 9 Unmodified _SYLRKPISV_ 0 0 0 REV__Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|14|2|sense REV__Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 531.818941 1061.62333 0.4144 0.00022039 -3.7201 -0.0019784 -3.3057 -0.001758 531.8167186775195 77.798 0.20982 81.08 81.029 81.238 3.2816 0.0047845 -0.00037907 NaN 1.8442 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 62630 + 43033 32172 27234 27246 0.09498308748311501 SYLRKRMRK 9 Unmodified _SYLRKRMRK_ 0 0 0 LTR2_dup653|chr13:40880826-40881282:-|2.258208676588821|0.4067555319894583|2.47|151.0|12|3|sense LTR2_dup653|chr13:40880826-40881282:-|2.258208676588821|0.4067555319894583|2.47|151.0|12|3|sense LTR2_dup653|chr13:40880826-40881282:-|2.258208676588821|0.4067555319894583|2.47|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 619.371337890625 2 619.369141 1236.72373 NaN NaN NaN NaN NaN NaN NaN 92.917 1 96.385 95.885 96.885 3.4687 0 0 0 0.4007 1 22951 22951 0.52476 0 1 43034 15598 27235 27247 49378 49378 0.11483642530333782 SYLRKRMRK 9 Unmodified _SYLRKRMRK_ 0 0 0 LTR2_dup653|chr13:40880826-40881282:-|2.258208676588821|0.4067555319894583|2.47|151.0|12|3|sense LTR2_dup653|chr13:40880826-40881282:-|2.258208676588821|0.4067555319894583|2.47|151.0|12|3|sense LTR2_dup653|chr13:40880826-40881282:-|2.258208676588821|0.4067555319894583|2.47|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 619.3717651367188 2 619.369141 1236.72373 NaN NaN NaN NaN NaN NaN NaN 93.059 1 96.527 96.027 97.027 3.4687 0 0 0 0.4007 1 22981 22981 0.52476 0 1 43035 15598 27235 27247 49379 49379 0.11483642530333782 SYLSRLQYF 9 Unmodified _SYLSRLQYF_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_1 5 588.8062744140625 2 588.806031 1175.59751 0.53307 0.00031387 0.092132 5.4248E-05 0.6252 0.00036812 588.8059799371881 63.891 0.50298 67.349 67.081 67.584 3.4578 65 36 3 0 0 0 0.12795 4 14395 14352;14358;14395;14477 28.495 14.588 1 220240 43036 3407 27236 27248 49380;49381;49382;49383 49382 0.01673414506035442 SYLSRLQYF 9 Unmodified _SYLSRLQYF_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_2 6 588.805908203125 2 588.806031 1175.59751 0.52385 0.00030845 0.393 0.0002314 0.91685 0.00053985 588.8061785792157 63.646 0.28722 67.12 66.979 67.266 3.4743 36 21 2 0 0 0 0.279 2 14301 14301;14340 15.248 8.5253 1 216580 43037 3407 27236 27248 49384;49385 49384 0.01673414506035442 SYLSRLQYF 9 Unmodified _SYLSRLQYF_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_2 6 588.806396484375 2 588.806031 1175.59751 0.52223 0.00030749 0.066328 3.9054E-05 0.58855 0.00034654 588.8059561951819 63.851 0.22298 67.326 67.253 67.476 3.4743 22 14 2 0 0 0 0.13455 1 14377 14377 27.223 14.181 1 180950 43038 3407 27236 27248 49386 49386 0.01673414506035442 SYLSRLQYF 9 Unmodified _SYLSRLQYF_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS UPN48_class_I_Rep_3 7 588.7551879882812 2 588.806031 1175.59751 0.52819 0.000311 0.095521 5.6243E-05 0.62371 0.00036724 588.806049271551 63.493 0.59703 67.002 66.823 67.42 3.5091 69 47 2 0 0 0 0.10225 4 14165 14161;14165;14204;14241 33.445 15.452 1 189050 43039 3407 27236 27248 49387;49388;49389;49390 49388 0.01673414506035442 SYLVNYLQ 8 Unmodified _SYLVNYLQ_ 0 0 0 L1MC5_dup12665|chr15:89182904-89183344:-|1.5854387451715768|0.2263899077101508|2.81|151.0|10|2|sense L1MC5_dup12665|chr15:89182904-89183344:-|1.5854387451715768|0.2263899077101508|2.81|151.0|10|2|sense L1MC5_dup12665|chr15:89182904-89183344:-|1.5854387451715768|0.2263899077101508|2.81|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 500.225341796875 2 500.260925 998.507297 NaN NaN NaN NaN NaN NaN NaN 40.634 1 44.376 43.876 44.876 3.7413 0 0 0 0.40404 1 7335 7335 5.2307 0.90143 1 43040 11666 27237 27249 49391 49391 0.007983651776157785 SYLVVLWIN 9 Unmodified _SYLVVLWIN_ 0 0 0 REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|224|2|anti-sense REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|224|2|anti-sense MSMS UPN48_class_I_Rep_2 6 553.8179931640625 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 64.621 1 68.1 67.6 68.6 3.4792 0 0 0 0.38478 1 14624 14624 4.3292 0.73274 1 + 43041 30515 27238 27250 49392 49392 0.06859790516796238 SYMAFFILR 9 Unmodified _SYMAFFILR_ 0 0 0 L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense L1MB4_dup7472|chr16:68208740-68209212:-|1.7436624409007413|0.0146671121954223|6.89|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 574.3018188476562 2 574.30207 1146.58959 NaN NaN NaN NaN NaN NaN NaN 67.637 1 71.145 70.645 71.645 3.5077 0 0 0 0.38478 1 15455 15455 4.3292 1.7518 1 43042 10579 27239 27251 49393 49393 0.022155639849188447 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(92)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS UPN48_class_I_Rep_1 5 549.7500610351562 2 549.749867 1097.48518 0.57272 0.00031485 -0.015432 -8.4837E-06 0.55729 0.00030637 549.7498045476117 57.327 1.2647 60.821 60.324 61.589 3.4942 298 103 4 0 0 0 0.0052487 6 12434 12321;12358;12396;12434;12475;12510 136.33 84.065 1 2558000 43043 4448 27240 27252 49394;49395;49396;49397;49398;49399 49397 143 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(57)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS UPN48_class_I_Rep_1 5 549.7500610351562 2 549.749867 1097.48518 0.61784 0.00033966 -0.40335 -0.00022174 0.21449 0.00011792 549.7495295812193 62.343 1.1905 65.805 65.358 66.549 3.4625 118 87 2 0 0 0 0.029391 2 13988 13988;14027 57.471 39.336 1 278870 43044 4448 27240 27252 49400;49401 49400 143 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(92)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS UPN48_class_I_Rep_2 6 549.7501220703125 2 549.749867 1097.48518 0.59468 0.00032692 -0.040586 -2.2312E-05 0.55409 0.00030461 549.7497829853163 57.296 1.1133 60.81 60.305 61.419 3.5142 269 91 4 0 0 0 0.0052487 6 12319 12280;12319;12363;12400;12443;12480 136.33 94.239 1 2849900 43045 4448 27240 27252 49402;49403;49404;49405;49406;49407 49403 143 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(160)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS UPN48_class_I_Rep_3 7 549.7501831054688 2 549.749867 1097.48518 0.33964 0.00018672 0.19238 0.00010576 0.53203 0.00029248 549.7499216212764 57.088 1.1729 60.631 60.27 61.443 3.5427 290 106 4 0 0 0 0.00018819 6 12297 12189;12224;12261;12297;12336;12372 164.52 112.25 1 3098000 43046 4448 27240 27252 49408;49409;49410;49411;49412;49413 49411 143 -0.059661825624516496 SYMYIRKK 8 Unmodified _SYMYIRKK_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|103|3|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|103|3|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|103|3|sense MSMS UPN46_class_I_Rep_3 1 544.80224609375 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 26.088 1 26.088 25.588 26.588 0 0 0 0 0.40746 1 3678 3678 0.69038 0 1 43047 12974 27241 27253 49414 49414 0.04454679842137921 SYNDQGEQ 8 Unmodified _SYNDQGEQ_ 0 0 0 REV__L1MEc_dup16804|chr18:2791558-2791950:+|1.253169287506126|0.1068667846158742|3.55|151.0|3|1|sense REV__L1MEc_dup16804|chr18:2791558-2791950:+|1.253169287506126|0.1068667846158742|3.55|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 470.68548583984375 2 470.685778 939.357004 NaN NaN NaN NaN NaN NaN NaN 20.029 1 20.029 19.529 20.529 0 0 0 0 0.40738 1 2011 2011 0.79363 0 1 + 43048 28404 27242 27254 49415 49415 -0.11510026551991359 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_1 2 596.767333984375 2 596.767103 1191.51965 0.28973 0.0001729 0.18532 0.00011059 0.47504 0.00028349 596.7671629820105 51.335 0.79911 54.928 54.658 55.458 3.5932 84 39 3 0 0 0 0.0052635 4 11330 11281;11330;11369;11409 79.427 63.58 1 247560 43049 1248 27243 27255 49416;49417;49418;49419 49417 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_2 3 596.767333984375 2 596.767103 1191.51965 0.51023 0.00030449 0.12899 7.6979E-05 0.63923 0.00038147 596.7670913359736 51.613 0.84031 54.951 54.685 55.525 3.3386 85 41 3 0 0 0 0.06432 4 11416 11416;11457;11504;11615 42.835 34.09 1 278370 43050 1248 27243 27255 49420;49421;49422;49423 49420 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_3 4 596.7669677734375 2 596.767103 1191.51965 0.53355 0.00031841 0.049738 2.9682E-05 0.58329 0.00034809 596.7670217566787 51.772 0.82748 54.977 54.636 55.463 3.2055 106 46 3 0 0 0 0.01765 5 11551 11505;11551;11597;11650;11659 64.927 49.08 1 246680 43051 1248 27243 27255 49424;49425;49426;49427;49428 49425 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN48_class_I_Rep_1 5 596.7684936523438 2 596.767103 1191.51965 0.42672 0.00025465 0.43718 0.00026089 0.8639 0.00051554 596.767234889269 51.506 0.51305 55.029 54.751 55.264 3.5227 64 41 2 0 0 0 0.056914 5 10600 10577;10600;10636;10645;10656 46.022 35.198 1 206760 43052 1248 27243 27255 49429;49430;49431;49432;49433 49430 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MSMS UPN48_class_I_Rep_1 5 596.7679443359375 2 596.767103 1191.51965 NaN NaN NaN NaN NaN NaN NaN 51.725 1 55.248 54.748 55.748 3.5227 0 0 0 0.23173 1 10697 10697 14.405 7.1161 1 43053 1248 27243 27255 49434 49434 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN48_class_I_Rep_2 6 597.2706298828125 2 596.767103 1191.51965 0.48836 0.00029144 0.3749 0.00022373 0.86326 0.00051517 596.7672713579852 51.431 0.49949 55.099 54.798 55.298 3.6679 64 39 3 0 0 0 0.048191 4 10620 10557;10578;10581;10620 49.742 33.895 1 198250 43054 1248 27243 27255 49435;49436;49437;49438 49438 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MSMS UPN48_class_I_Rep_3 7 596.7675170898438 2 596.767103 1191.51965 NaN NaN NaN NaN NaN NaN NaN 51.389 1 55 54.5 55.5 3.6105 0 0 0 0.026395 1 10526 10526 49.742 36.699 1 43055 1248 27243 27255 49439 49439 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MSMS UPN48_class_I_Rep_3 7 596.767822265625 2 596.767103 1191.51965 NaN NaN NaN NaN NaN NaN NaN 51.524 1 55.135 54.635 55.635 3.6105 0 0 0 0.034285 1 10568 10568 42.835 30.595 1 43056 1248 27243 27255 49440 49440 -0.06844643150020602 SYNFYYQF 8 Unmodified _SYNFYYQF_ 0 0 0 L1ME4c_dup5104|chrX:81285184-81285596:+|2.706209232173597|0.0823899131154856|5.04|151.0|32|3|anti-sense L1ME4c_dup5104|chrX:81285184-81285596:+|2.706209232173597|0.0823899131154856|5.04|151.0|32|3|anti-sense L1ME4c_dup5104|chrX:81285184-81285596:+|2.706209232173597|0.0823899131154856|5.04|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.2442016601562 2 566.242732 1130.47091 NaN NaN NaN NaN NaN NaN NaN 26.923 1 30.265 29.765 30.765 3.3422 0 0 0 0.40746 1 4012 4012 0.69038 0 1 43057 12953 27244 27256 49441 49441 -0.08910511719113856 SYNKLIGIL 9 Unmodified _SYNKLIGIL_ 0 0 0 L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|44|1|anti-sense L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|44|1|anti-sense L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.8080139160156 2 510.808042 1019.60153 NaN NaN NaN NaN NaN NaN NaN 61.531 1 64.999 64.499 65.499 3.4678 0 0 0 0.38073 1 13697 13697 5.2969 0.066215 1 43058 13057 27245 27257 49442 49442 0.09251503999769284 SYNLDVQFY 9 Unmodified _SYNLDVQFY_ 0 0 0 REV__L1ME2z_dup3635|chr9:131448776-131449346:-|2.4650341244810443|0.2581697609168378|3.26|151.0|23|1|anti-sense REV__L1ME2z_dup3635|chr9:131448776-131449346:-|2.4650341244810443|0.2581697609168378|3.26|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7670288085938 2 574.766571 1147.51859 0.32605 0.0001874 -0.022341 -1.2841E-05 0.30371 0.00017456 574.7665228032793 67.671 0.59074 71.032 70.744 71.335 3.3611 92 44 3 0 0 0 0.023254 2 16315 16232;16315 61.357 2.6787 1 228720 + 43059 27920 27246 27258 49443;49444 49444 -0.049268575188989416 SYNLDVQFY 9 Unmodified _SYNLDVQFY_ 0 0 0 REV__L1ME2z_dup3635|chr9:131448776-131449346:-|2.4650341244810443|0.2581697609168378|3.26|151.0|23|1|anti-sense REV__L1ME2z_dup3635|chr9:131448776-131449346:-|2.4650341244810443|0.2581697609168378|3.26|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7683715820312 2 574.766571 1147.51859 0.44119 0.00025358 -0.11674 -6.7099E-05 0.32445 0.00018648 574.7664442400406 67.844 0.67651 71.036 70.709 71.385 3.1914 89 50 2 0 0 0 0.090251 1 16511 16511 36.127 4.8587 1 208140 + 43060 27920 27246 27258 49445 49445 -0.049268575188989416 SYNLNCFFHL 10 Unmodified _SYNLNCFFHL_ 0 0 0 REV__L1MEg2_dup616|chr15:90898082-90898891:+|2.693115729038363|0.1177863345616934|4.52|151.0|46|2|anti-sense REV__L1MEg2_dup616|chr15:90898082-90898891:+|2.693115729038363|0.1177863345616934|4.52|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 629.791015625 2 629.289691 1256.56483 0.49171 0.00030943 -0.57656 -0.00036282 -0.084853 -5.3397E-05 629.2891205171892 32.229 0.44968 35.756 35.441 35.89 3.5266 59 43 2 0 0 0 0.56309 1 4857 4857 1.6526 0.17072 1 113620 + 43061 28794 27247 27259 49446 49446 -0.053191158884601464 SYNNFFRMF 9 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ SYNNFFRM(1)F SYNNFFRM(56)F 0 0 1 ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENST00000517754.1_1_8:26221160-26227926:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 621.2734375 2 621.274041 1240.53353 0.55743 0.00034632 0.088651 5.5077E-05 0.64609 0.0004014 621.2740906722446 63.353 0.63394 66.811 66.544 67.178 3.4578 76 50 2 0 0 0 0.033731 1 14231 14231 55.503 42.63 1 156190 43062 4725 27248 27260 49447 49447 149 -0.07711688922563553 SYNNFFRMF 9 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ SYNNFFRM(1)F SYNNFFRM(52)F 0 0 1 ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENST00000517754.1_1_8:26221160-26227926:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 621.274658203125 2 621.274041 1240.53353 0.60452 0.00037557 -0.27335 -0.00016983 0.33117 0.00020575 621.2739239440737 63.214 0.68067 66.723 66.33 67.011 3.5091 106 52 3 0 0 0 0.043452 1 14126 14126 51.63 40.806 1 227850 43063 4725 27248 27260 49448 49448 149 -0.07711688922563553 SYNRVNRSI 9 Unmodified _SYNRVNRSI_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|1|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|5|intron;VPS13D|p.Q3021Pfs*39|1|0.05|ENSG00000048707|chr1:12346640-12346641|-/C|frameshift_variant;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|6|intron nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS UPN48_class_I_Rep_3 7 554.796142578125 2 554.796529 1107.5785 NaN NaN NaN NaN NaN NaN NaN 65.373 1 68.88 68.38 69.38 3.5077 0 0 0 0.38639 1 14768 14768 3.9444 0 1 43064 897 27249 27261 49449 49449 0.029018779349826218 SYNSVVFIW 9 Unmodified _SYNSVVFIW_ 0 0 0 L1MB7_dup19736|chr17:19928892-19929359:+|1.7422856918907546|0.0248022921355524|6.13|150.0|22|1|anti-sense L1MB7_dup19736|chr17:19928892-19929359:+|1.7422856918907546|0.0248022921355524|6.13|150.0|22|1|anti-sense L1MB7_dup19736|chr17:19928892-19929359:+|1.7422856918907546|0.0248022921355524|6.13|150.0|22|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7799682617188 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 36.43 1 40.099 39.599 40.599 3.6692 0 0 0 0.35339 1 6798 6798 7.9102 0.3012 1 43065 10775 27250 27262 49450 49450 -0.0027365941400603333 SYNYLGFAR 9 Unmodified _SYNYLGFAR_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS UPN46_class_I_Rep_3 1 545.769775390625 2 545.769448 1089.52434 0.29681 0.00016199 0.19101 0.00010425 0.48782 0.00026624 545.7694727001915 56.889 0.48752 56.889 56.664 57.151 0 87 56 2 0 0 0 0.14216 1 12468 12468 26.268 17.675 1 329300 43066 1520 27251 27263 49451 49451 -0.01683714216574117 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MSMS UPN48_class_I_Rep_1 5 526.7688598632812 2 526.768583 1051.52261 0.31779 0.0001674 -0.069262 -3.6485E-05 0.24853 0.00013092 526.7684610927171 84.681 0.19534 88.278 88.135 88.33 3.5973 55 26 3 0 0 0 0.056917 1 20275 20275 46.021 1.6139 1 243510 43067 3304 27252 27264 49452 49452 -0.0010876802521124773 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MSMS UPN48_class_I_Rep_1 5 526.7687377929688 2 526.768583 1051.52261 0.31688 0.00016692 0.42069 0.00022161 0.73757 0.00038853 526.7689899362438 84.794 0.11784 88.391 88.33 88.448 3.5973 28 17 2 0 0 0 0.056917 1 20300 20300 46.021 1.6139 1 376820 43068 3304 27252 27264 49453 49453 -0.0010876802521124773 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MSMS UPN48_class_I_Rep_3 7 526.7692260742188 2 526.768583 1051.52261 NaN NaN NaN NaN NaN NaN NaN 84.714 1 88.463 87.963 88.963 3.7494 0 0 0 0.029163 1 20104 20104 46.021 1.6139 1 43069 3304 27252 27264 49454 49454 -0.0010876802521124773 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D nc|ENSG00000143486|P41214-2|EIF2D nc|ENSG00000143486|P41214-2|EIF2D MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.768583 1051.52261 0.48162 0.0002537 0.20355 0.00010723 0.68517 0.00036093 526.7689569558208 84.875 0.032303 88.624 88.609 88.642 3.7494 0.16284 4.4566E-05 NaN 46.021 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 156670 43070 3304 27252 27264 -0.0010876802521124773 SYPDNFLHI 9 Unmodified _SYPDNFLHI_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MULTI-MSMS UPN48_class_I_Rep_1 5 553.2693481445312 2 553.269281 1104.52401 0.61888 0.00034241 -0.11078 -6.1291E-05 0.5081 0.00028112 553.7706292502145 64.056 0.59547 67.514 67.178 67.774 3.4578 107 42 3 0 0 0 0.20276 1 14471 14471 20.454 1.1966 1 622470 43071 954 27253 27265 49455 49455 -0.02407133936435457 SYPDNFLHI 9 Unmodified _SYPDNFLHI_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 553.269281 1104.52401 0.61888 0.00034241 -0.11078 -6.1291E-05 0.5081 0.00028112 553.7706292502145 64.056 0.59547 67.514 67.178 67.774 3.4578 0.10909 -0.00011179 NaN 20.454 107 42 3 NaN NaN NaN NaN 0 NaN NaN 0 622470 43072 954 27253 27265 -0.02407133936435457 SYPDNFLHI 9 Unmodified _SYPDNFLHI_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 553.269281 1104.52401 0.53313 0.00029497 -0.062059 -3.4336E-05 0.47107 0.00026063 553.2692762209666 63.962 0.70029 67.436 67.051 67.752 3.4743 0.031208 -5.7881E-05 NaN 20.454 121 51 3 NaN NaN NaN NaN 0 NaN NaN 0 401290 43073 954 27253 27265 -0.02407133936435457 SYPFTFEAF 9 Unmodified _SYPFTFEAF_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS UPN48_class_I_Rep_2 6 554.7535400390625 2 554.752933 1107.49131 0.49358 0.00027381 -0.19381 -0.00010752 0.29977 0.0001663 554.7527750764731 85.709 0.29717 89.415 89.28 89.578 3.7058 32 30 2 0 0 0 0.23293 1 20367 20367 18.146 8.0724 1 82901 43074 768 27254 27266 49456 49456 -0.05813341059274535 SYPHQLLVK 9 Unmodified _SYPHQLLVK_ 0 0 0 L1M4b_dup4168|chr19:40027078-40028333:-|1.7033236792732356|0.3994504520784352|2.09|151.0|33|3|sense L1M4b_dup4168|chr19:40027078-40028333:-|1.7033236792732356|0.3994504520784352|2.09|151.0|33|3|sense L1M4b_dup4168|chr19:40027078-40028333:-|1.7033236792732356|0.3994504520784352|2.09|151.0|33|3|sense MSMS UPN48_class_I_Rep_2 6 542.808837890625 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 62.11 1 65.584 65.084 66.084 3.4738 0 0 0 0.39598 1 13852 13852 1.6526 0.17072 1 43075 9026 27255 27267 49457 49457 0.06922022231287883 SYPKIIEEF 9 Unmodified _SYPKIIEEF_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-4|FANCD2;ENSG00000144554.12,FANCD2,chr3,+,I15.1,10043865,10045526|23|5.82|1|intron;FANCD2|p.E750Gfs*7|1|0.04|ENSG00000144554|chr3:10065471-10065472|-/GGGTTTTAGA|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-SECPEP UPN48_class_I_Rep_2 6 563.29541015625 2 563.294965 1124.57538 0.55158 0.0003107 0.50879 0.0002866 1.0604 0.0005973 563.295199868288 61.371 0.73006 64.845 64.469 65.199 3.4745 113 60 3 0 0 0 0.063482 1 13610 13610 32.786 13.529 1 325120 43076 3360 27256 27268 49458 49458 0.018071900376071426 SYPKIIEEF 9 Unmodified _SYPKIIEEF_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-4|FANCD2;ENSG00000144554.12,FANCD2,chr3,+,I15.1,10043865,10045526|23|5.82|1|intron;FANCD2|p.E750Gfs*7|1|0.04|ENSG00000144554|chr3:10065471-10065472|-/GGGTTTTAGA|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS UPN48_class_I_Rep_3 7 563.2952270507812 2 563.294965 1124.57538 0.43263 0.0002437 0.56181 0.00031646 0.99444 0.00056016 563.2951678878007 61.22 0.83115 64.733 64.304 65.135 3.5129 137 69 3 0 0 0 0.062142 1 13487 13487 43.772 19.752 1 284720 43077 3360 27256 27268 49459 49459 0.018071900376071426 SYPKIIEEF 9 Unmodified _SYPKIIEEF_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-4|FANCD2;ENSG00000144554.12,FANCD2,chr3,+,I15.1,10043865,10045526|23|5.82|1|intron;FANCD2|p.E750Gfs*7|1|0.04|ENSG00000144554|chr3:10065471-10065472|-/GGGTTTTAGA|frameshift_variant nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 563.294965 1124.57538 0.59815 0.00033693 0.26527 0.00014942 0.86341 0.00048636 563.2950129537292 61.398 0.75434 64.865 64.471 65.225 3.4678 0.050843 -0.00021675 NaN 43.772 144 70 3 NaN NaN NaN NaN 0 NaN NaN 0 354030 43078 3360 27256 27268 0.018071900376071426 SYPLFYQSL 9 Unmodified _SYPLFYQSL_ 0 0 0 REV__L1MC4a_dup123|chr1:41125865-41127591:-|1.4499233827024811|0.0458599002927663|4.98|151.0|80|1|anti-sense REV__L1MC4a_dup123|chr1:41125865-41127591:-|1.4499233827024811|0.0458599002927663|4.98|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2785034179688 2 559.281857 1116.54916 NaN NaN NaN NaN NaN NaN NaN 44.972 1 48.734 48.234 49.234 3.7617 0 0 0 0.38639 1 8633 8633 3.9444 1.4459 1 + 43079 26975 27257 27269 49460 49460 -0.004450791338740601 SYPLPTFLWGC 11 Unmodified _SYPLPTFLWGC_ 0 0 0 L1PA5_dup11216|chr22:38365607-38366654:+|1.7149340500939012|0.2092477475696933|3.03|151.0|51|2|anti-sense L1PA5_dup11216|chr22:38365607-38366654:+|1.7149340500939012|0.2092477475696933|3.03|151.0|51|2|anti-sense L1PA5_dup11216|chr22:38365607-38366654:+|1.7149340500939012|0.2092477475696933|3.03|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_3 4 642.3085327148438 2 642.310092 1282.60563 NaN NaN NaN NaN NaN NaN NaN 87.076 1 90.456 89.956 90.956 3.3801 0 0 0 0.38417 1 21820 21820 1.3295 0.13619 1 43080 14424 27258 27270 49461 49461 -0.024367745688550713 SYPPKPRR 8 Unmodified _SYPPKPRR_ 0 0 0 REV__ENSG00000164379|ENST00000296839|FOXQ1 REV__ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS UPN48_class_I_Rep_1 5 500.7652893066406 2 500.787976 999.561398 0.21375 0.00010704 -0.94694 -0.00047422 -0.73319 -0.00036717 501.2869685553987 41.162 0.03627 44.668 44.641 44.678 3.506 4 2 2 0 0 0 0.82752 1 7462 7462 2.5775 0 1 63198 + 43081 20061 27259 27271 49462 49462 0.061600021198501054 SYPPKPRR 8 Unmodified _SYPPKPRR_ 0 0 0 REV__ENSG00000164379|ENST00000296839|FOXQ1 REV__ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 500.787976 999.561398 0.21375 0.00010704 -0.94694 -0.00047422 -0.73319 -0.00036717 501.2869685553987 41.162 0.03627 44.668 44.641 44.678 3.506 0 0 NaN 2.5775 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 63198 + 43082 20061 27259 27271 0.061600021198501054 SYPTFFPRF 9 Unmodified _SYPTFFPRF_ 0 0 0 ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF ENSG00000071794|ENST00000310053|HLTF ENSG00000071794|ENST00000310053|HLTF MSMS UPN48_class_I_Rep_1 5 581.3012084960938 2 581.290017 1160.56548 NaN NaN NaN NaN NaN NaN NaN 72.81 1 76.284 75.784 76.784 3.4732 0 0 0 0.38639 1 17114 17114 3.9444 0 1 43083 1091 27260 27272 49463 49463 -0.008379531770970061 SYPVERKKL 9 Unmodified _SYPVERKKL_ 0 0 0 REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|4|1|sense REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 560.6769409179688 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 43.148 1 46.91 46.41 47.41 3.7617 0 0 0 0.39428 1 8074 8074 2.0598 0 1 + 43084 28154 27261 27273 49464 49464 0.09021693777026485 SYPYLLNTY 9 Unmodified _SYPYLLNTY_ 0 0 0 REV__L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|25|1|anti-sense REV__L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|25|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.2794189453125 2 567.279315 1132.54408 0.47555 0.00026977 -0.20444 -0.00011597 0.27111 0.00015379 567.2791262082409 77.251 0.64285 80.583 80.284 80.927 3.3315 118 65 2 0 0 0 0.42249 1 19202 19202 6.7232 0 1 145430 + 43085 28464 27262 27274 49465 49465 -0.016893829964601537 SYPYLLNTY 9 Unmodified _SYPYLLNTY_ 0 0 0 REV__L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|25|1|anti-sense REV__L1MEc_dup6409|chr5:132912884-132913453:+|1.2303001551754518|0.0502970409660182|4.61|151.0|25|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.2796020507812 2 567.279315 1132.54408 0.46314 0.00026273 -0.21019 -0.00011924 0.25295 0.00014349 567.2791785346689 77.281 0.68125 80.55 80.3 80.981 3.269 119 72 2 0 0 0 0.16559 2 19268 19232;19268 24.021 0 1 151850 + 43086 28464 27262 27274 49466;49467 49467 -0.016893829964601537 SYQEVTVQR 9 Unmodified _SYQEVTVQR_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MSMS UPN46_class_I_Rep_3 1 555.2831420898438 2 555.28292 1108.55129 NaN NaN NaN NaN NaN NaN NaN 31.727 1 31.727 31.227 32.227 0 0 0 0 0.067326 1 5339 5339 32.037 16.789 1 43087 3874 27263 27275 49468 49468 0.001353496039428137 SYQHGITEHG 10 Unmodified _SYQHGITEHG_ 0 0 0 MER63A_dup1396|chr6:109373811-109373962:-|2.855335384521671|0.4872134850498201|2.55|151.0|11|2|anti-sense MER63A_dup1396|chr6:109373811-109373962:-|2.855335384521671|0.4872134850498201|2.55|151.0|11|2|anti-sense MER63A_dup1396|chr6:109373811-109373962:-|2.855335384521671|0.4872134850498201|2.55|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7561645507812 2 564.757069 1127.49959 NaN NaN NaN NaN NaN NaN NaN 21.753 1 25.103 24.603 25.603 3.3496 0 0 0 0.53105 1 2487 2487 1.4819 0 1 43088 16166 27264 27276 49469 49469 -0.0590639408997049 SYQKPLLPSFL 11 Unmodified _SYQKPLLPSFL_ 0 0 0 REV__L1MC3_dup6679|chr9:37152249-37153109:-|1.639260122944971|0.0397281695096241|5.37|150.0|61|3|anti-sense REV__L1MC3_dup6679|chr9:37152249-37153109:-|1.639260122944971|0.0397281695096241|5.37|150.0|61|3|anti-sense MSMS UPN46_class_I_Rep_3 1 647.2996215820312 2 646.866089 1291.71762 NaN NaN NaN NaN NaN NaN NaN 49.64 1 49.64 49.14 50.14 0 0 0 0 0.38417 1 10434 10434 2.9952 0 1 + 43089 26773 27265 27277 49470 49470 0.08343402779792086 SYQKPLLPSFL 11 Unmodified _SYQKPLLPSFL_ 0 0 0 REV__L1MC3_dup6679|chr9:37152249-37153109:-|1.639260122944971|0.0397281695096241|5.37|150.0|61|3|anti-sense REV__L1MC3_dup6679|chr9:37152249-37153109:-|1.639260122944971|0.0397281695096241|5.37|150.0|61|3|anti-sense MSMS UPN46_class_I_Rep_3 1 646.8674926757812 2 646.866089 1291.71762 NaN NaN NaN NaN NaN NaN NaN 50.392 1 50.392 49.892 50.892 0 0 0 0 0.38417 1 10648 10648 5.7319 0 1 + 43090 26773 27265 27277 49471 49471 0.08343402779792086 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK ENSG00000168078|ENST00000301905|PBK ENSG00000168078|ENST00000301905|PBK MULTI-MSMS UPN48_class_I_Rep_1 5 563.8103637695312 2 563.810782 1125.60701 0.55011 0.00031016 -0.12594 -7.1009E-05 0.42417 0.00023915 563.8104308485978 64.324 0.76466 67.782 67.359 68.124 3.4578 115 57 3 0 0 0 0.022868 3 14556 14475;14556;14592 61.602 25.475 1 334060 43091 4351 27266 27278 49472;49473;49474 49473 0.04923182791549152 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK ENSG00000168078|ENST00000301905|PBK ENSG00000168078|ENST00000301905|PBK MULTI-MSMS UPN48_class_I_Rep_2 6 563.8111572265625 2 563.810782 1125.60701 0.52895 0.00029823 -0.17539 -9.8887E-05 0.35356 0.00019934 563.8104327487962 64.189 0.73775 67.663 67.295 68.033 3.4743 103 54 3 0 0 0 0.029742 4 14474 14421;14433;14474;14514 57.249 25.981 1 582270 43092 4351 27266 27278 49475;49476;49477;49478 49477 0.04923182791549152 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK ENSG00000168078|ENST00000301905|PBK ENSG00000168078|ENST00000301905|PBK MULTI-MSMS UPN48_class_I_Rep_3 7 563.8109741210938 2 563.810782 1125.60701 0.45846 0.00025848 -0.059693 -3.3656E-05 0.39876 0.00022483 563.810567842981 63.885 0.79718 67.393 67.169 67.966 3.5083 117 66 3 0 0 0 0.029742 4 14326 14286;14326;14366;14406 57.249 24.463 1 336620 43093 4351 27266 27278 49479;49480;49481;49482 49480 0.04923182791549152 SYQLLIHKL 9 Unmodified _SYQLLIHKL_ 0 0 0 L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|32|2|anti-sense L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|32|2|anti-sense L1ME5_dup150|chr1:156217749-156218262:-|2.949069434750954|0.2437727483517834|3.6|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.835205078125 2 557.834591 1113.65463 0.45956 0.00025636 -0.26069 -0.00014542 0.19888 0.00011094 557.8345080611542 48.566 0.74559 52.09 51.738 52.484 3.5239 85 50 2 0 0 0 0.48846 1 9817 9817 1.8442 0 1 250010 43094 12966 27267 27279 49483 49483 0.1023488178241223 SYQWRFMR 8 Unmodified _SYQWRFMR_ 0 0 0 REV__L1M4_dup9837|chr9:77776240-77776817:+|1.3748479223925845|0.0150267124871935|6.52|151.0|21|3|sense REV__L1M4_dup9837|chr9:77776240-77776817:+|1.3748479223925845|0.0150267124871935|6.52|151.0|21|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 587.7865600585938 2 587.284743 1172.55493 0.42614 0.00025027 -1.176 -0.00069067 -0.74991 -0.00044041 587.2841274728307 46.486 0.23035 50.123 50.015 50.245 3.6363 16 12 2 0 0 0 0.72333 1 9021 9021 5.2307 0 1 60341 + 43095 24471 27268 27280 49484 49484 -0.024442591031856864 SYRERTKI 8 Unmodified _SYRERTKI_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|38|2|sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|38|2|sense MSMS UPN47_class_I_Rep_3 4 527.2640380859375 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 21.882 1 25.232 24.732 25.732 3.3496 0 0 0 0.40625 1 2525 2525 2.3027 0 1 + 43096 24716 27269 27281 49485 49485 0.05371663566097595 SYRHRWCR 8 Unmodified _SYRHRWCR_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MSMS UPN46_class_I_Rep_3 1 582.283447265625 2 582.285608 1162.55666 NaN NaN NaN NaN NaN NaN NaN 41.056 1 41.056 40.556 41.556 0 0 0 0 0.37214 1 8014 8014 16.942 1.0951 1 43097 5970 27270 27282 49486 49486 -0.01811205294575302 SYRLELEF 8 Unmodified _SYRLELEF_ 0 0 0 L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|25|2|sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|25|2|sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 528.7694091796875 2 528.771657 1055.52876 NaN NaN NaN NaN NaN NaN NaN 111.44 1 114.96 114.46 115.46 3.5226 0 0 0 0.40643 1 27121 27121 2.0598 0 1 43098 8625 27271 27283 49487 49487 0.00321750206330762 SYRPHCEP 8 Unmodified _SYRPHCEP_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MSMS UPN46_class_I_Rep_3 1 494.7183532714844 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 111.16 1 111.16 110.66 111.66 0 0 0 0 0.40625 1 27393 27393 2.3027 0 1 43099 5474 27272 27284 49488 49488 -0.07096489190939792 SYRPHCEP 8 Unmodified _SYRPHCEP_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MSMS UPN47_class_I_Rep_2 3 494.71868896484375 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 27.706 1 31.205 30.705 31.705 3.4986 0 0 0 0.40625 1 4199 4199 2.3027 0 1 43100 5474 27272 27284 49489 49489 -0.07096489190939792 SYRPRFVW 8 Unmodified _SYRPRFVW_ 0 0 0 REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|16|3|sense REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 555.7522583007812 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 41.004 1 44.511 44.011 45.011 3.506 0 0 0 0.40404 1 7422 7422 5.2307 0 1 + 43101 17315 27273 27285 49490 49490 0.026642886369018015 SYRQLRRQ 8 Unmodified _SYRQLRRQ_ 0 0 0 REV__L1P2_dup793|chr8:47751990-47754192:+|1.4040629309706896|0.0181239738949658|6.28|151.0|11|1|sense REV__L1P2_dup793|chr8:47751990-47754192:+|1.4040629309706896|0.0181239738949658|6.28|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 553.810546875 2 553.812513 1105.61047 NaN NaN NaN NaN NaN NaN NaN 39.899 1 43.64 43.14 44.14 3.7413 0 0 0 0.40625 1 7129 7129 2.3027 0 1 + 43102 28859 27274 27286 49491 49491 0.06189290408792658 SYRRRLPSV 9 Unmodified _SYRRRLPSV_ 0 0 0 nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF nc|nan|Q6P1X6-2|C8orf82 nc|nan|Q6P1X6-2|C8orf82 MULTI-MSMS UPN48_class_I_Rep_2 6 567.3294067382812 2 567.330539 1132.64652 0.48453 0.00027489 -0.18482 -0.00010486 0.29971 0.00017003 567.330212093525 81.861 0.48072 85.518 85.316 85.797 3.6567 78 61 2 0 0 0 0.50088 1 19451 19451 0.52476 0 1 113700 43103 6116 27275 27287 49492 49492 0.08550747585650242 SYRRRTLSR 9 Unmodified _SYRRRTLSR_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MSMS UPN48_class_I_Rep_1 5 597.8457641601562 2 597.844345 1193.67414 NaN NaN NaN NaN NaN NaN NaN 41.984 1 45.492 44.992 45.992 3.5079 0 0 0 0.39518 1 7714 7714 1.8442 0.19162 1 43104 5377 27276 27288 49493 49493 0.08504650845884498 SYRTDIFFG 9 Unmodified _SYRTDIFFG_ 0 0 0 REV__nc|ENSG00000166938|Q8TF46-3|DIS3L REV__nc|ENSG00000166938|Q8TF46-3|DIS3L MULTI-MSMS UPN48_class_I_Rep_3 7 553.2694702148438 2 553.269281 1104.52401 0.40735 0.00022537 0.18918 0.00010467 0.59653 0.00033004 553.2693863497639 63.755 0.79729 67.264 66.896 67.693 3.5091 141 63 3 0 0 0 0.41259 1 14240 14240 7.2892 0.56607 1 642250 + 43105 23056 27277 27289 49494 49494 -0.02407133936435457 SYSFSYSGSL 10 Unmodified _SYSFSYSGSL_ 0 0 0 REV__ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|1|intron REV__ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 549.2431640625 2 549.242929 1096.47131 0.060485 3.3221E-05 0.44767 0.00024588 0.50816 0.0002791 549.2431048778549 42.07 0.51077 45.309 45.153 45.664 3.2394 62 39 2 0 0 0 0.56333 1 8614 8614 1.4819 0 1 101820 + 43106 20888 27278 27290 49495 49495 -0.07307136789881952 SYSLITGWVD 10 Unmodified _SYSLITGWVD_ 0 0 0 REV__ENST00000503057.5_2_4:41540302-41600955:+|nuORF REV__ENST00000503057.5_2_4:41540302-41600955:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 570.7825317382812 2 570.782222 1139.54989 0.29923 0.0001708 -0.20154 -0.00011503 0.097694 5.5762E-05 570.7820013981599 53.505 0.72433 57.032 56.739 57.464 3.5278 72 47 2 0 0 0 0.54466 1 12002 12002 6.2058 0 1 100070 + 43107 22695 27279 27291 49496 49496 -0.01430284484808908 SYSNDDSVVL 10 Unmodified _SYSNDDSVVL_ 0 0 0 L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|47|3|sense L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|47|3|sense L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|47|3|sense MSMS UPN48_class_I_Rep_2 6 549.7503051757812 2 549.751118 1097.48768 NaN NaN NaN NaN NaN NaN NaN 66.22 1 69.706 69.206 70.206 3.4866 0 0 0 0.53105 1 15112 15112 6.2058 0.44535 1 43108 10818 27280 27292 49497 49497 -0.05716055623815919 SYSNKYWVF 9 Unmodified _SYSNKYWVF_ 0 0 0 REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|255|2|anti-sense REV__L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|255|2|anti-sense MSMS UPN48_class_I_Rep_3 7 597.2705078125 2 597.284931 1192.55531 NaN NaN NaN NaN NaN NaN NaN 51.331 1 54.941 54.441 55.441 3.6105 0 0 0 0.38299 1 10508 10508 4.756 0.42677 1 + 43109 30417 27281 27293 49498 49498 -0.033265609023374054 SYSPFSQCLF 10 Unmodified _SYSPFSQCLF_ 0 0 0 REV__L1MC4a_dup6454|chr10:87161454-87162411:+|1.4709432664018929|0.0918434209289848|4.0|151.0|48|2|anti-sense REV__L1MC4a_dup6454|chr10:87161454-87162411:+|1.4709432664018929|0.0918434209289848|4.0|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_2 6 589.7637329101562 2 589.762975 1177.5114 NaN NaN NaN NaN NaN NaN NaN 75.172 1 78.762 78.262 79.262 3.59 0 0 0 0.53105 1 17719 17719 21.537 1.0834 1 + 43110 27009 27282 27294 49499 49499 -0.07025913390975802 SYSQLCAALGV 11 Unmodified _SYSQLCAALGV_ 0 0 0 ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF MULTI-MSMS UPN47_class_I_Rep_2 3 556.2742309570312 2 556.276249 1110.53795 0.51345 0.00028562 -1.8118 -0.0010078 -1.2983 -0.00072222 556.2742247884607 51.756 0.78519 55.09 54.72 55.505 3.3332 78 38 3 0 0 0 0.33678 1 11500 11500 12.241 3.4953 1 117130 43111 3915 27283 27295 49500 49500 -0.01290224499643955 SYSQLCAALGV 11 Unmodified _SYSQLCAALGV_ 0 0 0 ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF MULTI-MSMS UPN47_class_I_Rep_3 4 556.27490234375 2 556.276249 1110.53795 0.52431 0.00029166 -2.1053 -0.0011711 -1.5809 -0.00087944 556.2744878486029 52.004 0.67651 55.209 54.802 55.478 3.2055 63 38 3 0 0 0 0.4608 1 11651 11651 8.7454 1.6437 1 90026 43112 3915 27283 27295 49501 49501 -0.01290224499643955 SYSQSSNLF 9 Unmodified _SYSQSSNLF_ 0 0 0 ENST00000589881.5_1_18:32917198-32917747:-|nuORF;ENSG00000172466|ENST00000261332|ZNF24 ENST00000589881.5_1_18:32917198-32917747:-|nuORF ENST00000589881.5_1_18:32917198-32917747:-|nuORF MSMS UPN48_class_I_Rep_1 5 516.7348022460938 2 516.735271 1031.45599 NaN NaN NaN NaN NaN NaN NaN 50.282 1 53.807 53.307 54.307 3.5246 0 0 0 0.13613 1 10252 10252 20.415 3.4722 1 43113 4575 27284 27296 49502 49502 -0.05848003587107087 SYSQSSNLF 9 Unmodified _SYSQSSNLF_ 0 0 0 ENST00000589881.5_1_18:32917198-32917747:-|nuORF;ENSG00000172466|ENST00000261332|ZNF24 ENST00000589881.5_1_18:32917198-32917747:-|nuORF ENST00000589881.5_1_18:32917198-32917747:-|nuORF MSMS UPN48_class_I_Rep_2 6 516.7359008789062 2 516.735271 1031.45599 NaN NaN NaN NaN NaN NaN NaN 50.096 1 53.791 53.291 54.291 3.6946 0 0 0 0.21832 1 10192 10192 15.248 0 1 43114 4575 27284 27296 49503 49503 -0.05848003587107087 SYSTAWIYQ 9 Unmodified _SYSTAWIYQ_ 0 0 0 L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.761474609375 2 559.761289 1117.50803 0.50861 0.0002847 -0.20514 -0.00011483 0.30346 0.00016987 559.7611329124518 68.478 0.71805 71.93 71.571 72.29 3.4517 164 64 3 0 0 0 0.26948 1 15893 15893 15.847 15.847 1 627730 43115 10929 27285 27297 49504 49504 -0.04602840173333789 SYSTAWIYQ 9 Unmodified _SYSTAWIYQ_ 0 0 0 L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.761474609375 2 559.761289 1117.50803 0.50231 0.00028118 -0.12018 -6.7274E-05 0.38213 0.0002139 559.7611103647554 68.363 0.77209 71.871 71.478 72.25 3.5083 187 72 3 0 0 0 0.35081 1 15864 15864 10.824 10.824 1 590500 43116 10929 27285 27297 49505 49505 -0.04602840173333789 SYSTAWIYQ 9 Unmodified _SYSTAWIYQ_ 0 0 0 L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.7616577148438 2 559.761289 1117.50803 0.47656 0.00026676 -0.21639 -0.00012113 0.26017 0.00014563 559.761108828131 68.316 0.81033 71.826 71.476 72.286 3.5093 189 71 3 0 0 0 0.26948 1 15577 15577 15.847 15.847 1 605620 43117 10929 27285 27297 49506 49506 -0.04602840173333789 SYSTMWTYH 9 Unmodified _SYSTMWTYH_ 0 0 0 L1MC5a_dup2450|chr2:201202909-201203249:-|1.0228476594710667|0.0507789834666741|4.33|151.0|19|2|anti-sense L1MC5a_dup2450|chr2:201202909-201203249:-|1.0228476594710667|0.0507789834666741|4.33|151.0|19|2|anti-sense L1MC5a_dup2450|chr2:201202909-201203249:-|1.0228476594710667|0.0507789834666741|4.33|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_2 3 588.2457275390625 2 588.244949 1174.47534 NaN NaN NaN NaN NaN NaN NaN 113.94 1 117.45 116.95 117.95 3.5109 0 0 0 0.4007 1 27727 27727 0.52476 0 1 43118 11736 27286 27298 49507 49507 -0.10491370567820013 SYTFKRPV 8 Unmodified _SYTFKRPV_ 0 0 0 ENSG00000170948|ENST00000595891|MBD3L1 ENSG00000170948|ENST00000595891|MBD3L1 ENSG00000170948|ENST00000595891|MBD3L1 MSMS UPN47_class_I_Rep_1 2 499.3056640625 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 50.061 1 53.69 53.19 54.19 3.6285 0 0 0 0.40746 1 10945 10945 0.69038 0 1 43119 4500 27287 27299 49508 49508 0.04085777651414446 SYTHIQYLF 9 Unmodified _SYTHIQYLF_ 0 0 0 nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MSMS UPN48_class_I_Rep_1 5 586.29248046875 2 586.292756 1170.57096 0.54345 0.00031862 -0.054688 -3.2063E-05 0.48876 0.00028656 586.2926212081462 63.093 0.81623 66.556 66.21 67.027 3.4625 119 57 3 0 0 0 0.24936 1 14121 14121 17.113 3.2068 1 361940 43120 1410 27288 27300 49509 49509 -0.007502743853137872 SYTHIQYLF 9 Unmodified _SYTHIQYLF_ 0 0 0 nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MSMS UPN48_class_I_Rep_2 6 586.2927856445312 2 586.292756 1170.57096 0.52764 0.00030935 -0.02092 -1.2265E-05 0.50672 0.00029709 586.2926434942425 63.036 0.78514 66.51 66.148 66.933 3.4738 129 60 3 0 0 0 0.15122 2 14067 14067;14091 25.399 4.2403 1 547060 43121 1410 27288 27300 49510;49511 49510 -0.007502743853137872 SYTHIQYLF 9 Unmodified _SYTHIQYLF_ 0 0 0 nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MSMS UPN48_class_I_Rep_3 7 586.2925415039062 2 586.292756 1170.57096 0.51709 0.00030316 -0.010788 -6.325E-06 0.5063 0.00029684 586.2925636292705 62.839 0.89818 66.348 65.972 66.87 3.5091 141 64 3 0 0 0 0.30034 1 14099 14099 13.906 0 1 356540 43122 1410 27288 27300 49512 49512 -0.007502743853137872 SYTHIQYLF 9 Unmodified _SYTHIQYLF_ 0 0 0 nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 586.292756 1170.57096 0.54345 0.00031862 -0.054688 -3.2063E-05 0.48876 0.00028656 586.2926212081462 63.093 0.81623 66.556 66.21 67.027 3.4625 0.084677 -3.3887E-05 NaN 25.399 119 57 3 NaN NaN NaN NaN 0 NaN NaN 0 361940 43123 1410 27288 27300 -0.007502743853137872 SYTHIQYLF 9 Unmodified _SYTHIQYLF_ 0 0 0 nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 586.292756 1170.57096 0.52764 0.00030935 -0.02092 -1.2265E-05 0.50672 0.00029709 586.2926434942425 63.036 0.78514 66.51 66.148 66.933 3.4738 0.038311 5.7084E-06 NaN 25.399 129 60 3 NaN NaN NaN NaN 0 NaN NaN 0 547060 43124 1410 27288 27300 -0.007502743853137872 SYTIQFNPL 9 Unmodified _SYTIQFNPL_ 0 0 0 L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|126|2|anti-sense L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|126|2|anti-sense L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|126|2|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7784423828125 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 41.626 1 45.132 44.632 45.632 3.506 0 0 0 0.38639 1 7608 7608 3.9444 0.94915 1 43125 10746 27289 27301 49513 49513 0.0069003672338112665 SYTPTVVHI 9 Unmodified _SYTPTVVHI_ 0 0 0 REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 508.2112731933594 2 508.7742 1015.53385 0.28554 0.00014527 -0.66844 -0.00034009 -0.3829 -0.00019481 508.7739377331863 67.758 0.28254 71.21 70.966 71.248 3.4517 24 20 2 0 0 0 0.12444 1 15535 15535 2.0598 0 1 62855 + 43126 18419 27290 27302 49514 49514 0.02670054068948957 SYTRLFSNF 9 Unmodified _SYTRLFSNF_ 0 0 0 ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1 ENST00000490112.1_1_3:33438535-33441732:-|nuORF ENST00000490112.1_1_3:33438535-33441732:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 567.2973022460938 2 567.782556 1133.55056 0.55197 0.0003134 -0.24062 -0.00013662 0.31135 0.00017678 568.2837746333607 60.911 0.431 64.39 64.175 64.606 3.4785 75 39 2 0 0 0 0.069349 1 13478 13478 31.268 12.011 1 337710 43127 3647 27291 27303 49515 49515 -0.010874450451183293 SYTRLFSNF 9 Unmodified _SYTRLFSNF_ 0 0 0 ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1 ENST00000490112.1_1_3:33438535-33441732:-|nuORF ENST00000490112.1_1_3:33438535-33441732:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 567.782556 1133.55056 0.57781 0.00032807 -0.2499 -0.00014189 0.32791 0.00018618 567.7824411276706 61.016 0.54557 64.49 64.215 64.76 3.4737 0.11525 5.2746E-05 NaN 31.268 94 47 3 NaN NaN NaN NaN 0 NaN NaN 0 217360 43128 3647 27291 27303 -0.010874450451183293 SYTRLFSNF 9 Unmodified _SYTRLFSNF_ 0 0 0 ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1 ENST00000490112.1_1_3:33438535-33441732:-|nuORF ENST00000490112.1_1_3:33438535-33441732:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 567.782556 1133.55056 0.44762 0.00025415 -0.44859 -0.0002547 -0.00096781 -5.4951E-07 567.7822944332119 60.731 0.3443 64.244 63.999 64.343 3.5128 -0.13049 -0.00017288 NaN 31.268 72 35 3 NaN NaN NaN NaN 0 NaN NaN 0 266420 43129 3647 27291 27303 -0.010874450451183293 SYTYHKSLHM 10 Unmodified _SYTYHKSLHM_ 0 0 0 REV__L1MA4A_dup409|chr1:220129234-220130555:-|1.3008359396029947|0.1844652503812477|2.82|151.0|35|2|sense REV__L1MA4A_dup409|chr1:220129234-220130555:-|1.3008359396029947|0.1844652503812477|2.82|151.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 633.8025512695312 2 633.800423 1265.58629 NaN NaN NaN NaN NaN NaN NaN 61.321 1 64.834 64.334 65.334 3.5129 0 0 0 0.53105 1 13542 13542 3.5965 0.31518 1 + 43130 25300 27292 27304 49516 49516 -0.03587730859749172 SYTYIIKKLY 10 Unmodified _SYTYIIKKLY_ 0 0 0 REV__L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense REV__L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 646.3658447265625 2 646.368464 1290.72238 NaN NaN NaN NaN NaN NaN NaN 46.293 1 50.043 49.543 50.543 3.7494 0 0 0 0.53105 1 9030 9030 1.6526 0.17072 1 + 43131 28782 27293 27305 49517 49517 0.08864286922585052 SYTYIIKKLY 10 Unmodified _SYTYIIKKLY_ 0 0 0 REV__L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense REV__L1MEg_dup7750|chr9:6470376-6471064:+|1.415733295802169|0.0095288598563232|7.22|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 646.3663330078125 2 646.368464 1290.72238 NaN NaN NaN NaN NaN NaN NaN 50.45 1 54.144 53.644 54.644 3.6946 0 0 0 0.53105 1 10301 10301 1.6526 0 1 + 43132 28782 27293 27305 49518 49518 0.08864286922585052 SYTYTIKFIL 10 Unmodified _SYTYTIKFIL_ 0 0 0 REV__HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|11|2|sense REV__HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 624.846923828125 2 624.847364 1247.68018 NaN NaN NaN NaN NaN NaN NaN 47.361 1 50.883 50.383 51.383 3.5219 0 0 0 0.53105 1 9351 9351 3.5965 0.8613 1 + 43133 23345 27294 27306 49519 49519 0.06624311514201509 SYVKFYYL 8 Unmodified _SYVKFYYL_ 0 0 0 REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|130|2|anti-sense REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|130|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7819213867188 2 541.781493 1081.54843 0.38222 0.00020708 -0.26053 -0.00014115 0.12168 6.5926E-05 541.78127246001 47.772 0.83982 51.294 51.098 51.938 3.5219 93 60 2 0 0 0 0.82752 1 9508 9508 8.5933 1.304 1 247760 + 43134 25348 27295 27307 49520 49520 0.010921262170768387 SYVKFYYL 8 Unmodified _SYVKFYYL_ 0 0 0 REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|130|2|anti-sense REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|130|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.7814331054688 2 541.781493 1081.54843 0.44709 0.00024223 0.32667 0.00017698 0.77376 0.00041921 541.7814982176875 47.7 0.6991 51.334 51.101 51.8 3.6339 75 50 2 0 0 0 0.82752 1 9347 9347 5.2307 0.90143 1 201610 + 43135 25348 27295 27307 49521 49521 0.010921262170768387 SYVMLKTK 8 Unmodified _SYVMLKTK_ 0 0 0 ENST00000495270.1_1_9:130698003-130699012:-|nuORF;ENSG00000136908|ENST00000314392|DPM2 ENST00000495270.1_1_9:130698003-130699012:-|nuORF ENST00000495270.1_1_9:130698003-130699012:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.2853698730469 2 485.275521 968.536489 NaN NaN NaN NaN NaN NaN NaN 50.911 1 54.578 54.078 55.078 3.6679 0 0 0 0.40604 1 10441 10441 2.5775 0 1 43136 2996 27296 27308 49522 49522 0.050961862022631976 SYVMLKTK 8 Unmodified _SYVMLKTK_ 0 0 0 ENST00000495270.1_1_9:130698003-130699012:-|nuORF;ENSG00000136908|ENST00000314392|DPM2 ENST00000495270.1_1_9:130698003-130699012:-|nuORF ENST00000495270.1_1_9:130698003-130699012:-|nuORF MSMS UPN48_class_I_Rep_2 6 485.2857971191406 2 485.275521 968.536489 NaN NaN NaN NaN NaN NaN NaN 51.503 1 55.171 54.671 55.671 3.6679 0 0 0 0.4044 1 10623 10623 4.756 0 1 43137 2996 27296 27308 49523 49523 0.050961862022631976 SYVQQIPVTRL 11 Unmodified _SYVQQIPVTRL_ 0 0 0 L1PA14_dup188|chr1:207777345-207779308:-|4.306210159308245|0.3859403091277982|3.48|151.0|55|3|sense L1PA14_dup188|chr1:207777345-207779308:-|4.306210159308245|0.3859403091277982|3.48|151.0|55|3|sense L1PA14_dup188|chr1:207777345-207779308:-|4.306210159308245|0.3859403091277982|3.48|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 435.2513427734375 3 435.250472 1302.72959 NaN NaN NaN NaN NaN NaN NaN 68.063 1 71.515 71.015 72.015 3.4517 0 0 0 0.38417 1 15692 15692 1.1098 0.41209 1 43138 13825 27297 27309 49524 49524 0.09033019522985342 SYVQQIPVTRL 11 Unmodified _SYVQQIPVTRL_ 0 0 0 L1PA14_dup188|chr1:207777345-207779308:-|4.306210159308245|0.3859403091277982|3.48|151.0|55|3|sense L1PA14_dup188|chr1:207777345-207779308:-|4.306210159308245|0.3859403091277982|3.48|151.0|55|3|sense L1PA14_dup188|chr1:207777345-207779308:-|4.306210159308245|0.3859403091277982|3.48|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 435.25128173828125 3 435.250472 1302.72959 NaN NaN NaN NaN NaN NaN NaN 68.076 1 71.527 71.027 72.027 3.4517 0 0 0 0.38417 1 15696 15696 1.1098 0.48293 1 43139 13825 27297 27309 49525 49525 0.09033019522985342 SYVVVRNEL 9 Unmodified _SYVVVRNEL_ 0 0 0 REV__L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|23|3|sense REV__L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 539.7980346679688 2 539.798206 1077.58186 0.47403 0.00025588 -0.25508 -0.00013769 0.21895 0.00011819 539.7980563407941 47.002 0.80315 50.638 50.229 51.032 3.6363 134 56 3 0 0 0 0.24936 1 9095 9095 17.113 0.96379 1 716850 + 43140 26305 27298 27310 49526 49526 0.0461712798901317 SYWFVRLL 8 Unmodified _SYWFVRLL_ 0 0 0 L1ME3G_dup13493|chr15:72477171-72477312:-|1.0880195527590857|0.0094579811162414|6.85|151.0|12|3|anti-sense L1ME3G_dup13493|chr15:72477171-72477312:-|1.0880195527590857|0.0094579811162414|6.85|151.0|12|3|anti-sense L1ME3G_dup13493|chr15:72477171-72477312:-|1.0880195527590857|0.0094579811162414|6.85|151.0|12|3|anti-sense MSMS UPN48_class_I_Rep_1 5 542.30517578125 2 542.302927 1082.5913 NaN NaN NaN NaN NaN NaN NaN 62.223 1 65.687 65.187 66.187 3.4636 0 0 0 0.3903 1 13909 13909 11.64 5.2862 1 43141 12825 27299 27311 49527 49527 0.053309410651763756 SYWGFCFIV 9 Unmodified _SYWGFCFIV_ 0 0 0 REV__nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 REV__nc|ENSG00000172197|Q6ZNC8-3|MBOAT1 MSMS UPN47_class_I_Rep_1 2 561.2601318359375 2 561.259871 1120.50519 NaN NaN NaN NaN NaN NaN NaN 68.044 1 71.408 70.908 71.908 3.3646 0 0 0 0.39326 1 16401 16401 2.3027 0 1 + 43142 20439 27300 27312 49528 49528 -0.050243868318602836 SYWHHKIL 8 Unmodified _SYWHHKIL_ 0 0 0 L1MC4a_dup9517|chr19:30016899-30018808:-|3.19642725007085|0.1302814756116995|4.62|151.0|115|3|anti-sense L1MC4a_dup9517|chr19:30016899-30018808:-|3.19642725007085|0.1302814756116995|4.62|151.0|115|3|anti-sense L1MC4a_dup9517|chr19:30016899-30018808:-|3.19642725007085|0.1302814756116995|4.62|151.0|115|3|anti-sense MSMS UPN48_class_I_Rep_3 7 542.2921752929688 2 542.290351 1082.56615 NaN NaN NaN NaN NaN NaN NaN 61.98 1 65.49 64.99 65.99 3.5104 0 0 0 0.4044 1 13741 13741 4.756 0.42677 1 43143 11635 27301 27313 49529 49529 0.028168862625989277 SYWKRNRR 8 Unmodified _SYWKRNRR_ 0 0 0 REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|20|3|sense REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 583.3223266601562 2 583.320506 1164.62646 0.55457 0.00032349 1.9418 0.0011327 2.4964 0.0014562 583.3215940173113 69.586 0.248 73.099 73.072 73.32 3.5128 21 18 2 0 0 0 0.82752 1 16050 16050 2.0598 0.21551 1 66846 + 43144 27279 27302 27314 49530 49530 0.050729966456856346 SYWKRNRR 8 Unmodified _SYWKRNRR_ 0 0 0 REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|20|3|sense REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|20|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 583.320506 1164.62646 0.4775 0.00027854 2.475 0.0014437 2.9525 0.0017223 583.8230860002126 69.78 0.07341 73.301 73.242 73.315 3.5216 0.10131 0.00034328 NaN 2.0598 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 54820 + 43145 27279 27302 27314 0.050729966456856346 SYWKRNRR 8 Unmodified _SYWKRNRR_ 0 0 0 REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|20|3|sense REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|20|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 583.320506 1164.62646 0.55457 0.00032349 1.9418 0.0011327 2.4964 0.0014562 583.3215940173113 69.586 0.248 73.099 73.072 73.32 3.5128 -0.10131 -0.0002788 NaN 2.0598 21 18 2 NaN NaN NaN NaN 0 NaN NaN 0 66846 + 43146 27279 27302 27314 0.050729966456856346 SYWKWLRQ 8 Unmodified _SYWKWLRQ_ 0 0 0 AluJb_dup53113|chr7:157344594-157344911:-|1.3242111197419253|0.0064530933120983|7.68|151.0|4|1|sense AluJb_dup53113|chr7:157344594-157344911:-|1.3242111197419253|0.0064530933120983|7.68|151.0|4|1|sense AluJb_dup53113|chr7:157344594-157344911:-|1.3242111197419253|0.0064530933120983|7.68|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 584.2716674804688 2 583.808908 1165.60326 0.50979 0.00029762 -2.7451 -0.0016026 -2.2353 -0.001305 584.3080186387947 62.762 0.079239 66.271 66.2 66.28 3.5091 6 4 2 0 0 0 0.72333 1 13973 13973 5.2307 0 1 81903 43147 54 27303 27315 49531 49531 0.027085578083415385 SYWPLGWYW 9 Unmodified _SYWPLGWYW_ 0 0 0 L1PBa_dup251|chr2:135298241-135299593:-|1.1607477345290338|0.0091947590725494|6.98|150.0|58|2|anti-sense L1PBa_dup251|chr2:135298241-135299593:-|1.1607477345290338|0.0091947590725494|6.98|150.0|58|2|anti-sense L1PBa_dup251|chr2:135298241-135299593:-|1.1607477345290338|0.0091947590725494|6.98|150.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 629.2904052734375 2 629.290017 1256.56548 NaN NaN NaN NaN NaN NaN NaN 34.16 1 37.68 37.18 38.18 3.5201 0 0 0 0.40038 1 5427 5427 0.6015 0 1 43148 15382 27304 27316 49532 49532 -0.052539531771117254 SYYCCIINHS 10 Unmodified _SYYCCIINHS_ 0 0 0 MLT1G3_dup1570|chr9:130027531-130027975:-|1.6182551444969828|0.0077703176137573|7.7|151.0|18|1|anti-sense MLT1G3_dup1570|chr9:130027531-130027975:-|1.6182551444969828|0.0077703176137573|7.7|151.0|18|1|anti-sense MLT1G3_dup1570|chr9:130027531-130027975:-|1.6182551444969828|0.0077703176137573|7.7|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 601.6996459960938 2 601.752084 1201.48961 NaN NaN NaN NaN NaN NaN NaN 114.16 1 117.73 117.23 118.23 3.572 0 0 0 0.53105 1 28198 28198 1.6526 0.32309 1 43149 16418 27305 27317 49533 49533 -0.10307041411215323 SYYDLGYLR 9 Unmodified _SYYDLGYLR_ 0 0 0 REV__Tigger3a_dup861|chr2:201235754-201236088:+|1.1313300412689755|0.0053360612260902|7.73|151.0|28|3|anti-sense REV__Tigger3a_dup861|chr2:201235754-201236088:+|1.1313300412689755|0.0053360612260902|7.73|151.0|28|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.7472534179688 2 575.282389 1148.55022 0.4231 0.0002434 0.68379 0.00039337 1.1069 0.00063678 575.2822655706067 58.478 0.08728 62.001 61.974 62.061 3.5231 5 4 2 0 0 0 0.12321 1 12690 12690 3.9444 2.1002 1 33193 + 43150 32724 27306 27318 49534 49534 -0.018108647649796694 SYYEQLYN 8 Unmodified _SYYEQLYN_ 0 0 0 L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|85|2|sense L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|85|2|sense L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|85|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.237548828125 2 540.237647 1078.46074 0.019674 1.0629E-05 0.14122 7.6292E-05 0.16089 8.692E-05 540.237561480691 41.915 0.70715 45.279 44.935 45.642 3.3635 92 52 2 0 0 0 0.82752 3 8452 8452;8499;8542 15.847 4.2069 1 118620 43151 9511 27307 27319 49535;49536;49537 49535 -0.0753511944433285 SYYGPLHGLC 10 Unmodified _SYYGPLHGLC_ 0 0 0 REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|109|1|anti-sense REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|109|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.2579956054688 2 555.257859 1108.50117 0.43855 0.00024351 0.24587 0.00013652 0.68442 0.00038003 555.2580260696213 49.623 0.72063 53.317 52.778 53.499 3.6946 62 47 2 0 0 0 0.51003 1 10092 10092 10.824 0 1 138100 + 43152 29213 27308 27320 49538 49538 -0.04874476325539945 SYYKNFYY 8 Unmodified _SYYKNFYY_ 0 0 0 L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|8|1|sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|8|1|sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.7562866210938 2 574.258382 1146.50221 -0.051513 -2.9582E-05 -2.9378 -0.001687 -2.9893 -0.0017166 574.756901251965 38.133 0.55955 41.798 41.495 42.054 3.6652 61 45 2 0 0 0 0.82752 1 7255 7255 6.7232 0 1 116430 43153 11810 27309 27321 49539 49539 -0.06517938685010449 SYYLRYFLFYF 11 Unmodified _SYYLRYFLFYF_ 0 0 0 L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|56|1|anti-sense L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|56|1|anti-sense L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_1 5 527.9301147460938 3 527.930739 1580.77039 NaN NaN NaN NaN NaN NaN NaN 25.282 1 28.849 28.349 29.349 3.5667 0 0 0 0.38417 1 2920 2920 0.094841 0 1 43154 13298 27310 27322 49540 49540 0.0032336084257167386 SYYYTYIF 8 Unmodified _SYYYTYIF_ 0 0 0 REV__L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|341|3|anti-sense REV__L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|341|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.2540283203125 2 560.255308 1118.49606 0.51899 0.00029077 -0.73921 -0.00041415 -0.22022 -0.00012338 560.2548213510205 57.116 0.56351 60.408 60.282 60.846 3.2912 70 46 2 0 0 0 0.82752 1 13160 13160 14.582 14.582 1 113220 + 43155 24789 27311 27323 49541 49541 -0.05844456916565832 TAANIAWE 8 Unmodified _TAANIAWE_ 0 0 0 REV__ENSG00000198954|ENST00000361983|KIFBP REV__ENSG00000198954|ENST00000361983|KIFBP MSMS UPN48_class_I_Rep_1 5 438.21685791015625 2 438.216517 874.418482 NaN NaN NaN NaN NaN NaN NaN 96.65 1 100.26 99.763 100.76 3.6124 0 0 0 0.4044 1 23292 23292 4.756 0 1 + 43156 21169 27312 27324 49542 49542 -0.02375050062050832 TADEVHYF 8 Unmodified _TADEVHYF_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_1 2 491.2190856933594 2 491.219257 980.423961 -0.25848 -0.00012697 0.032825 1.6124E-05 -0.22566 -0.00011085 491.2191992858313 40.41 0.53636 44.079 43.791 44.328 3.6696 67 38 2 0 0 0 0.82752 3 7964 7964;8003;8053 32.117 32.117 1 102730 43157 2153 27313 27325 49543;49544;49545 49543 -0.06703371270236858 TADEVHYF 8 Unmodified _TADEVHYF_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_2 3 491.21929931640625 2 491.219257 980.423961 -0.10227 -5.0238E-05 0.038469 1.8897E-05 -0.063802 -3.1341E-05 491.2192091892948 40.784 0.55091 44.156 43.822 44.373 3.3712 77 43 2 0 0 0 0.82752 2 8175 8130;8175 30.225 20.842 1 85706 43158 2153 27313 27325 49546;49547 49547 -0.06703371270236858 TADEVHYF 8 Unmodified _TADEVHYF_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_3 4 491.2192077636719 2 491.219257 980.423961 -0.23925 -0.00011753 -0.017931 -8.8082E-06 -0.25718 -0.00012633 491.21915455064163 40.842 0.48216 44.08 43.833 44.316 3.2372 44 32 2 0 0 0 0.82752 3 8189 8189;8235;8286 19.439 12.15 1 103700 43159 2153 27313 27325 49548;49549;49550 49548 -0.06703371270236858 TADEVHYFL 9 Unmodified _TADEVHYFL_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_1 2 547.7615356445312 2 547.761289 1093.50803 0.39809 0.00021806 -0.061585 -3.3734E-05 0.3365 0.00018432 547.7612080202797 56.132 0.85475 59.611 59.294 60.149 3.4785 111 48 3 0 0 0 0.0081951 3 12808 12808;12847;12935 71.134 54.984 1 313220 43160 2153 27314 27326 49551;49552;49553 49551 -0.03498840173347162 TADEVHYFL 9 Unmodified _TADEVHYFL_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_2 3 547.7615356445312 2 547.761289 1093.50803 0.49636 0.00027189 -0.15652 -8.5738E-05 0.33984 0.00018615 547.7611063311517 56.378 0.80588 59.679 59.336 60.142 3.3009 119 52 3 0 0 0 0.012845 3 12906 12906;12951;12999 68.081 52.234 1 344790 43161 2153 27314 27326 49554;49555;49556 49554 -0.03498840173347162 TADEVHYFL 9 Unmodified _TADEVHYFL_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS UPN47_class_I_Rep_3 4 547.7614135742188 2 547.761289 1093.50803 0.38107 0.00020873 -0.1302 -7.1321E-05 0.25086 0.00013741 547.7611650426443 56.577 0.72974 59.749 59.339 60.069 3.1721 108 46 3 0 0 0 0.012845 3 12992 12992;13035;13075 68.081 49.934 1 318380 43162 2153 27314 27326 49557;49558;49559 49557 -0.03498840173347162 TADGAHFEL 9 Unmodified _TADGAHFEL_ 0 0 0 ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENSG00000085872|ENST00000546361|CHERP ENSG00000085872|ENST00000546361|CHERP MSMS UPN47_class_I_Rep_2 3 480.7243347167969 2 480.724707 959.43486 NaN NaN NaN NaN NaN NaN NaN 43.223 1 46.581 46.081 47.081 3.358 0 0 0 0.29868 1 8894 8894 10.824 0 1 43163 1271 27315 27327 49560 49560 -0.0464796889596073 TADHNLLLY 9 Unmodified _TADHNLLLY_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS UPN47_class_I_Rep_1 2 530.277099609375 2 530.277106 1058.53966 0.23926 0.00012688 -0.15757 -8.3557E-05 0.081691 4.3319E-05 530.2770437916632 51.353 1.1243 54.947 54.574 55.698 3.5932 146 62 4 0 0 0 0.090251 1 11395 11395 36.127 0.082828 1 813400 43164 5018 27316 27328 49561 49561 0.01273152580643 TADHNLLLY 9 Unmodified _TADHNLLLY_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS UPN47_class_I_Rep_2 3 530.2770385742188 2 530.277106 1058.53966 0.30279 0.00016056 -0.28912 -0.00015331 0.013674 7.2509E-06 530.2769813411209 51.737 1.0266 55.07 54.627 55.654 3.3332 145 56 4 0 0 0 0.090251 1 11456 11456 36.127 0.082828 1 887240 43165 5018 27316 27328 49562 49562 0.01273152580643 TADRHVVL 8 Unmodified _TADRHVVL_ 0 0 0 ENSG00000120693|ENST00000379826|SMAD9 ENSG00000120693|ENST00000379826|SMAD9 ENSG00000120693|ENST00000379826|SMAD9 MULTI-MSMS UPN47_class_I_Rep_3 4 455.7586364746094 2 455.758884 909.503215 -0.84738 -0.0003862 0.3904 0.00017793 -0.45698 -0.00020827 455.758880614132 27.535 0.77388 30.878 30.398 31.172 3.3422 113 66 2 0 0 0 0.82752 1 4278 4278 6.7232 0 1 102260 43166 2335 27317 27329 49563 49563 0.044843204745689036 TADYHSNGY 9 Unmodified _TADYHSNGY_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS UPN47_class_I_Rep_1 2 514.2091674804688 2 514.209421 1026.40429 -0.22815 -0.00011732 0.099234 5.1027E-05 -0.12892 -6.6292E-05 514.209447205637 19.559 0.54273 23.171 22.904 23.447 3.6118 86 59 2 0 0 0 0.43153 1 1804 1804 6.2058 0.44535 1 42443 43167 2445 27318 27330 49564 49564 -0.10785747280988289 TADYHSNGY 9 Unmodified _TADYHSNGY_ 0 0 0 ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-3|PREX1 ENSG00000124126|ENST00000371941|PREX1 ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS UPN47_class_I_Rep_3 4 514.209716796875 2 514.209421 1026.40429 -0.50615 -0.00026027 0.46857 0.00024095 -0.037572 -1.932E-05 514.2096409230788 19.809 0.24586 23.161 23.059 23.305 3.3514 29 21 2 0 0 0 0.47197 1 1946 1946 3.5965 1.019 1 44004 43168 2445 27318 27330 49565 49565 -0.10785747280988289 TAEDQTDAAA 10 Unmodified _TAEDQTDAAA_ 0 0 0 REV__ENSG00000107874|ENST00000369937|CUEDC2 REV__ENSG00000107874|ENST00000369937|CUEDC2 MSMS UPN47_class_I_Rep_3 4 496.2953796386719 2 496.711993 991.409433 NaN NaN NaN NaN NaN NaN NaN 114.99 1 118.47 117.97 118.97 3.4802 0 0 0 0.53105 1 28256 28256 0 0 1 + 43169 18365 27319 27331 49566 49566 -0.08661488209054369 TAEDQTDAAA 10 Unmodified _TAEDQTDAAA_ 0 0 0 REV__ENSG00000107874|ENST00000369937|CUEDC2 REV__ENSG00000107874|ENST00000369937|CUEDC2 MSMS UPN48_class_I_Rep_2 6 496.71136474609375 2 496.711993 991.409433 NaN NaN NaN NaN NaN NaN NaN 117.3 1 120.97 120.47 121.47 3.6607 0 0 0 0.53105 1 28111 28111 0 0 1 + 43170 18365 27319 27331 49567 49567 -0.08661488209054369 TAEKEEFE 8 Unmodified _TAEKEEFE_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;ENST00000454171.1_1_7:84658221-84658887:+|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MSMS UPN47_class_I_Rep_1 2 491.7212219238281 2 491.72183 981.429106 NaN NaN NaN NaN NaN NaN NaN 40.603 1 44.275 43.775 44.775 3.6719 0 0 0 0.40604 1 8069 8069 2.5775 0 1 43171 1917 27320 27332 49568 49568 -0.062351121982715085 TAELVTDNSRS 11 Unmodified _TAELVTDNSRS_ 0 0 0 REV__ENSG00000137857|ENST00000389037|DUOX1 REV__ENSG00000137857|ENST00000389037|DUOX1 MSMS UPN47_class_I_Rep_3 4 596.7926635742188 2 596.793849 1191.57314 NaN NaN NaN NaN NaN NaN NaN 65.245 1 68.424 67.924 68.924 3.1795 0 0 0 0.38417 1 15658 15658 0.96228 0.36078 1 + 43172 19249 27321 27333 49569 49569 -0.014978904381450775 TAERANVI 8 Unmodified _TAERANVI_ 0 0 0 nc|ENSG00000135226|Q9BY64-2|UGT2B28;ENSG00000213759|ENST00000446444|UGT2B11;ENSG00000135226|ENST00000335568|UGT2B28 nc|ENSG00000135226|Q9BY64-2|UGT2B28 nc|ENSG00000135226|Q9BY64-2|UGT2B28 MSMS UPN46_class_I_Rep_3 1 437.23504638671875 2 437.243067 872.47158 NaN NaN NaN NaN NaN NaN NaN 67.482 1 67.482 66.982 67.982 0 0 0 0 0.39408 1 15365 15365 10.183 0 1 43173 2889 27322 27334 49570 49570 0.03024327720618203 TAGSAVVDL 9 Unmodified _TAGSAVVDL_ 0 0 0 HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense MSMS UPN47_class_I_Rep_1 2 416.723876953125 2 416.724175 831.433798 NaN NaN NaN NaN NaN NaN NaN 26.539 1 30.301 29.801 30.801 3.7624 0 0 0 0.29868 1 3811 3811 10.824 0 1 43174 8314 27323 27335 49571 49571 0.011338167351482298 TAGSAVVDL 9 Unmodified _TAGSAVVDL_ 0 0 0 HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense MSMS UPN47_class_I_Rep_3 4 416.7236022949219 2 416.724175 831.433798 NaN NaN NaN NaN NaN NaN NaN 26.62 1 29.967 29.467 30.467 3.3478 0 0 0 0.31276 1 3922 3922 10.074 0 1 43175 8314 27323 27335 49572 49572 0.011338167351482298 TAGSAVVDL 9 Unmodified _TAGSAVVDL_ 0 0 0 HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense MSMS UPN47_class_I_Rep_3 4 416.7241516113281 2 416.724175 831.433798 NaN NaN NaN NaN NaN NaN NaN 26.665 1 30.013 29.513 30.513 3.3478 0 0 0 0.13551 1 3935 3935 20.454 0 1 43176 8314 27323 27335 49573 49573 0.011338167351482298 TAGSAVVDL 9 Unmodified _TAGSAVVDL_ 0 0 0 HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|33|2|sense MSMS UPN47_class_I_Rep_3 4 416.7236633300781 2 416.724175 831.433798 NaN NaN NaN NaN NaN NaN NaN 26.715 1 30.063 29.563 30.563 3.3478 0 0 0 0.22485 1 3950 3950 14.838 0 1 43177 8314 27323 27335 49574 49574 0.011338167351482298 TAGSFSLSVR 10 Unmodified _TAGSFSLSVR_ 0 0 0 ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS UPN47_class_I_Rep_1 2 512.7750244140625 2 512.774731 1023.53491 -0.16861 -8.6458E-05 0.053038 2.7196E-05 -0.11557 -5.9262E-05 512.7747340828208 37.65 0.59702 41.315 41.065 41.662 3.6652 87 43 3 0 0 0 0.51508 1 7166 7166 10.151 0 1 182230 43178 4973 27324 27336 49575 49575 0.024082684378640806 TAGSFSLSVR 10 Unmodified _TAGSFSLSVR_ 0 0 0 ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS UPN47_class_I_Rep_2 3 512.7747192382812 2 512.774731 1023.53491 -0.28517 -0.00014623 0.028671 1.4702E-05 -0.2565 -0.00013153 512.7746317139869 37.901 0.63683 41.288 41.01 41.647 3.3879 103 49 3 0 0 0 0.51508 3 7303 7223;7263;7303 10.151 0 1 162410 43179 4973 27324 27336 49576;49577;49578 49578 0.024082684378640806 TAGSGLLGVAL 11 Unmodified _TAGSGLLGVAL_ 0 0 0 ENST00000534961.5_1_8:42742976-42751856:-|nuORF ENST00000534961.5_1_8:42742976-42751856:-|nuORF ENST00000534961.5_1_8:42742976-42751856:-|nuORF MSMS UPN48_class_I_Rep_3 7 479.7818298339844 2 479.782025 957.549496 NaN NaN NaN NaN NaN NaN NaN 39.625 1 43.28 42.78 43.78 3.6557 0 0 0 0.38417 1 6953 6953 2.7352 0 1 43180 7321 27325 27337 49579 49579 0.06902340585986622 TAGSIGTVRY 10 Unmodified _TAGSIGTVRY_ 0 0 0 REV__ENSG00000107201.10,DDX58,chr9,-,I15.1,32466442,32467761|27|4.81|2|intron REV__ENSG00000107201.10,DDX58,chr9,-,I15.1,32466442,32467761|27|4.81|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 512.7750854492188 2 512.774731 1023.53491 -0.16861 -8.6458E-05 0.053038 2.7196E-05 -0.11557 -5.9262E-05 512.7747340828208 37.65 0.59702 41.315 41.065 41.662 3.6652 87 43 3 0 0 0 0.46742 1 7208 7208 14.405 4.2548 1 182230 + 43181 18349 27326 27338 49580 49580 0.02408268437852712 TAGSYRLSVA 10 Unmodified _TAGSYRLSVA_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MULTI-MSMS UPN48_class_I_Rep_1 5 512.774658203125 2 512.774731 1023.53491 0.27189 0.00013942 -0.51688 -0.00026504 -0.24499 -0.00012562 512.7744125143857 37.973 0.48143 41.478 41.212 41.693 3.5052 78 48 2 0 0 0 0.55448 1 6537 6537 4.897 0 1 111320 + 43182 19853 27327 27339 49581 49581 0.024082684378413433 TAGSYRLSVA 10 Unmodified _TAGSYRLSVA_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MULTI-MSMS UPN48_class_I_Rep_2 6 512.774658203125 2 512.774731 1023.53491 0.29166 0.00014956 -0.23235 -0.00011914 0.059311 3.0413E-05 512.7744020666447 37.696 0.49448 41.412 41.161 41.655 3.7164 69 50 3 0 0 0 0.51508 1 6486 6486 10.151 0 1 95634 + 43183 19853 27327 27339 49582 49582 0.024082684378413433 TAGSYRLSVA 10 Unmodified _TAGSYRLSVA_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MULTI-MSMS UPN48_class_I_Rep_3 7 512.7743530273438 2 512.774731 1023.53491 0.21903 0.00011231 -0.29008 -0.00014875 -0.071051 -3.6433E-05 512.7745690449526 37.72 0.47817 41.379 41.137 41.615 3.6595 76 50 2 0 0 0 0.53414 2 6374 6374;6414 7.609 0 1 89555 + 43184 19853 27327 27339 49583;49584 49583 0.024082684378413433 TAHAQLGLIG 10 Unmodified _TAHAQLGLIG_ 0 0 0 REV__AluSx_dup12524|chr2:61511748-61512067:-|1.0217323662359272|0.0370227944495931|4.79|151.0|13|1|anti-sense REV__AluSx_dup12524|chr2:61511748-61512067:-|1.0217323662359272|0.0370227944495931|4.79|151.0|13|1|anti-sense MSMS UPN46_class_I_Rep_3 1 490.7810363769531 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 93.924 1 93.924 93.424 94.424 0 0 0 0 0.53105 1 22777 22777 1.8442 1.0506 1 + 43185 17135 27328 27340 49585 49585 0.05448876163097793 TAHDQKTAL 9 Unmodified _TAHDQKTAL_ 0 0 0 ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB ENSG00000142875|ENST00000370685|PRKACB MULTI-MSMS UPN46_class_I_Rep_3 1 492.75897216796875 2 492.759081 983.503609 -0.30205 -0.00014884 0.059489 2.9314E-05 -0.24256 -0.00011952 492.75904257430847 14.489 0.29901 14.489 14.357 14.656 0 60 35 2 0 0 0 0.36258 1 654 654 10.151 5.6217 1 43702 43186 3268 27329 27341 49586 49586 0.011196954037473006 TAHREGKVLSK 11 Unmodified _TAHREGKVLSK_ 0 0 0 MER73_dup266|chr19:9430563-9431064:+|1.397002813410869|0.096190957112726|3.86|151.0|35|3|anti-sense MER73_dup266|chr19:9430563-9431064:+|1.397002813410869|0.096190957112726|3.86|151.0|35|3|anti-sense MER73_dup266|chr19:9430563-9431064:+|1.397002813410869|0.096190957112726|3.86|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 613.3511352539062 2 613.354211 1224.69387 NaN NaN NaN NaN NaN NaN NaN 71.84 1 71.84 71.34 72.34 0 0 0 0 0.38417 1 16574 16574 2.4985 0.43874 1 43187 16203 27330 27342 49587 49587 0.09050982065991775 TAIQPKYY 8 Unmodified _TAIQPKYY_ 0 0 0 REV__L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|29|2|anti-sense REV__L1ME4b_dup13356|chr10:87757967-87758570:+|1.3777825920390792|0.2765989980297051|2.32|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.74951171875 2 492.263468 982.512382 0.1478 7.2755E-05 -0.99656 -0.00049057 -0.84876 -0.00041782 492.2648310358766 57.437 0.71118 60.874 60.578 61.289 3.437 114 60 3 0 0 0 0.82752 1 13219 13219 5.7604 0 1 122990 + 43188 28255 27331 27343 49588 49588 0.020426690402246095 TAIVLHTYL 9 Unmodified _TAIVLHTYL_ 0 0 0 ENSG00000173302|ENST00000309926|GPR148 ENSG00000173302|ENST00000309926|GPR148 ENSG00000173302|ENST00000309926|GPR148 MULTI-MSMS UPN47_class_I_Rep_1 2 515.79931640625 2 515.800217 1029.58588 0.38585 0.00019902 -1.1912 -0.0006144 -0.80531 -0.00041538 515.7994843102645 109.08 0.1606 112.69 112.61 112.77 3.6046 17 9 3 0 0 0 0.41259 1 26881 26881 7.2892 0 1 1840300 43189 4622 27332 27344 49589 49589 0.07227217482682136 TAKKTIKKVK 10 Unmodified _TAKKTIKKVK_ 0 0 0 L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 572.892578125 2 572.892441 1143.77033 0.401 0.00022973 0.095806 5.4887E-05 0.4968 0.00028461 572.8924997919966 108.38 0.33021 112.01 111.79 112.12 3.6313 52 25 4 0 0 0 0.84575 1 26179 26179 0 0 1 3935100 43190 9371 27333 27345 49590 49590 0.2041940563328808 TAKKTIKKVK 10 Unmodified _TAKKTIKKVK_ 0 0 0 L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 572.892441 1143.77033 0.63489 0.00036372 0.15906 9.1125E-05 0.79395 0.00045485 572.8925173362878 108.42 0.15781 111.95 111.89 112.05 3.5333 0.023813 3.1022E-05 NaN 0 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4818000 43191 9371 27333 27345 0.2041940563328808 TAKKTIKKVK 10 Unmodified _TAKKTIKKVK_ 0 0 0 L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 572.892441 1143.77033 0.50545 0.00028957 -0.040954 -2.3462E-05 0.4645 0.00026611 572.8923290670075 108.36 0.16434 111.9 111.88 112.05 3.5382 -0.030381 -0.00019815 NaN 0 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5964600 43192 9371 27333 27345 0.2041940563328808 TAKKTIKKVK 10 Unmodified _TAKKTIKKVK_ 0 0 0 L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 572.892441 1143.77033 0.48262 0.00027649 0.15154 8.6817E-05 0.63417 0.00036331 572.8924383376358 108.27 0.50912 111.94 111.72 112.23 3.6746 0.0099645 2.2406E-05 NaN 0 189 59 4 NaN NaN NaN NaN 0 NaN NaN 0 20967000 43193 9371 27333 27345 0.2041940563328808 TAKKTIKKVK 10 Unmodified _TAKKTIKKVK_ 0 0 0 L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|13|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 572.892441 1143.77033 0.4699 0.0002692 0.11754 6.7339E-05 0.58744 0.00033654 572.8923663678477 108.17 0.49614 111.85 111.67 112.16 3.6813 -0.084485 -1.655E-05 NaN 0 131 49 4 NaN NaN NaN NaN 0 NaN NaN 0 22617000 43194 9371 27333 27345 0.2041940563328808 TAKTIIAKY 9 Unmodified _TAKTIIAKY_ 0 0 0 REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|23|2|sense REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|23|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.8087158203125 2 504.808042 1007.60153 0.088148 4.4498E-05 1.4732 0.0007437 1.5614 0.0007882 504.8086889615715 31.596 0.10587 31.596 31.526 31.632 0 9 6 2 0 0 0 0.48643 1 5309 5309 2.0598 0 1 362190 + 43195 30589 27334 27346 49591 49591 0.09803503999751229 TALAVRKVPW 10 Unmodified _TALAVRKVPW_ 0 0 0 L1PA6_dup4901|chr13:47907967-47914110:+|1.1775924301434912|0.0657619294126392|4.16|151.0|313|2|anti-sense L1PA6_dup4901|chr13:47907967-47914110:+|1.1775924301434912|0.0657619294126392|4.16|151.0|313|2|anti-sense L1PA6_dup4901|chr13:47907967-47914110:+|1.1775924301434912|0.0657619294126392|4.16|151.0|313|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 571.3499145507812 2 570.848033 1139.68151 0.47643 0.00027197 0.30974 0.00017681 0.78617 0.00044878 570.8482462174735 110.2 0.18071 110.2 110.13 110.31 0 37 15 3 0 0 0 0.54466 1 27127 27127 6.2058 0.47393 1 1354300 43196 14654 27335 27347 49592 49592 0.11725990393620123 TALDRKLRG 9 Unmodified _TALDRKLRG_ 0 0 0 REV__ENSG00000108823|ENST00000262018|SGCA REV__ENSG00000108823|ENST00000262018|SGCA MSMS UPN48_class_I_Rep_2 6 515.3114013671875 2 515.311815 1028.60908 NaN NaN NaN NaN NaN NaN NaN 64.033 1 67.508 67.008 68.008 3.4743 0 0 0 0.38916 1 14443 14443 3.2813 1.4371 1 + 43197 18394 27336 27348 49593 49593 0.09591656320048969 TALHGHCA 8 Unmodified _TALHGHCA_ 0 0 0 REV__ENST00000477973.3_2_3:72427297-72427510:-|nuORF REV__ENST00000477973.3_2_3:72427297-72427510:-|nuORF MSMS UPN47_class_I_Rep_3 4 405.3002014160156 2 405.18978 808.365007 NaN NaN NaN NaN NaN NaN NaN 69.673 1 72.878 72.378 73.378 3.2044 0 0 0 0.40738 1 17001 17001 0.79363 0 1 + 43198 22549 27337 27349 49594 49594 -0.04684126045560788 TALIKKRMK 9 Unmodified _TALIKKRMK_ 0 0 0 REV__ENST00000359353.9_1_17:61851672-61869869:+|nuORF REV__ENST00000359353.9_1_17:61851672-61869869:+|nuORF MSMS UPN48_class_I_Rep_3 7 544.85107421875 2 544.852261 1087.68997 NaN NaN NaN NaN NaN NaN NaN 74.646 1 78.196 77.696 78.696 3.5505 0 0 0 0.39518 1 17495 17495 1.8442 0 1 + 43199 21890 27338 27350 49595 49595 0.14963221038578922 TALKKKKKSI 10 Unmodified _TALKKKKKSI_ 0 0 0 L1MC2_dup2027|chr5:142774398-142775470:-|1.3891000513897562|0.0184734995903521|6.23|151.0|29|2|sense L1MC2_dup2027|chr5:142774398-142775470:-|1.3891000513897562|0.0184734995903521|6.23|151.0|29|2|sense L1MC2_dup2027|chr5:142774398-142775470:-|1.3891000513897562|0.0184734995903521|6.23|151.0|29|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 572.892578125 2 572.892441 1143.77033 0.40095 0.0002297 -0.079615 -4.5611E-05 0.32134 0.00018409 572.8923274792631 108.1 0.47231 111.73 111.46 111.93 3.6313 108 39 4 0 0 0 0.84575 1 26179 26179 0 0 1 8484600 43200 11231 27339 27351 49596 49596 0.20419405633265342 TALLYIKL 8 Unmodified _TALLYIKL_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|165|2|anti-sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|165|2|anti-sense MSMS UPN47_class_I_Rep_1 2 467.8013916015625 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 70.714 1 74.085 73.585 74.585 3.3713 0 0 0 0.40738 1 17200 17200 0.79363 0 1 + 43201 25388 27340 27352 49597 49597 0.12045306976403936 TALLYIKL 8 Unmodified _TALLYIKL_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|165|2|anti-sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|165|2|anti-sense MSMS UPN47_class_I_Rep_3 4 467.8003845214844 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 35.088 1 38.352 37.852 38.852 3.2639 0 0 0 0.40604 1 6457 6457 2.5775 0 1 + 43202 25388 27340 27352 49598 49598 0.12045306976403936 TALLYIKL 8 Unmodified _TALLYIKL_ 0 0 0 REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|165|2|anti-sense REV__L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|165|2|anti-sense MSMS UPN47_class_I_Rep_3 4 467.8009338378906 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 35.258 1 38.522 38.022 39.022 3.2639 0 0 0 0.40738 1 6509 6509 0.79363 0 1 + 43203 25388 27340 27352 49599 49599 0.12045306976403936 TALMLSWLYIF 11 Unmodified _TALMLSWLYIF_ 0 0 0 REV__L1PA6_dup3189|chr8:99589751-99592552:-|1.037958496050037|0.0664588832369444|3.97|150.0|164|3|anti-sense REV__L1PA6_dup3189|chr8:99589751-99592552:-|1.037958496050037|0.0664588832369444|3.97|150.0|164|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 453.2458801269531 3 453.24567 1356.71518 0.14679 6.6533E-05 -0.31637 -0.00014339 -0.16958 -7.686E-05 453.2454999705465 48.529 0.49156 48.529 48.325 48.816 0 70 49 2 0 0 0 0.4411 1 10145 10145 9.2438 4.5279 1 170480 + 43204 29875 27341 27353 49600 49600 0.051092310504827765 TALRARWV 8 Unmodified _TALRARWV_ 0 0 0 ENSG00000107937.19,GTPBP4,chr10,+,I3.1,992660,995928|28|7.83|2|intron ENSG00000107937.19,GTPBP4,chr10,+,I3.1,992660,995928|28|7.83|2|intron ENSG00000107937.19,GTPBP4,chr10,+,I3.1,992660,995928|28|7.83|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 486.7899475097656 2 486.790518 971.566484 0.18849 9.1754E-05 -0.50531 -0.00024598 -0.31682 -0.00015422 486.7903080704948 35.107 0.67238 38.621 38.372 39.045 3.5144 104 69 2 0 0 0 0.82752 1 5744 5744 2.3027 0 1 125260 43205 1843 27342 27354 49601 49601 0.0795630598245225 TALRQRII 8 Unmodified _TALRQRII_ 0 0 0 ENST00000380033.8_1_X:18219997-18221692:-|nuORF ENST00000380033.8_1_X:18219997-18221692:-|nuORF ENST00000380033.8_1_X:18219997-18221692:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.8121337890625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 56.968 1 60.14 59.64 60.64 3.1721 0 0 0 0.40625 1 13133 13133 2.3027 0 1 43206 6485 27343 27355 49602 49602 0.12232861670997863 TAMAEPAMHLF 11 Unmodified _TAMAEPAMHLF_ 0 0 0 REV__L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|67|2|sense REV__L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|67|2|sense MSMS UPN48_class_I_Rep_3 7 406.85858154296875 3 406.85971 1217.5573 NaN NaN NaN NaN NaN NaN NaN 64.384 1 67.892 67.392 68.392 3.5083 0 0 0 0.38417 1 14470 14470 0.50596 0.23694 1 + 43207 26424 27344 27356 49603 49603 -0.042775914803996784 TANISIGAAF 10 Unmodified _TANISIGAAF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS UPN47_class_I_Rep_3 4 482.7586975097656 2 482.758549 963.502546 -0.40936 -0.00019762 -0.038764 -1.8714E-05 -0.44813 -0.00021634 482.7584879247399 37.108 0.60847 40.355 40.083 40.691 3.247 80 46 2 0 0 0 0.47413 1 7053 7053 13.906 0 1 128520 43208 1264 27345 27357 49604 49604 0.01933481034848228 TANRRALL 8 Unmodified _TANRRALL_ 0 0 0 REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|105|3|anti-sense REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|105|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 457.7798156738281 2 457.780151 913.545748 -0.004385 -2.0074E-06 0.23014 0.00010535 0.22576 0.00010335 457.78020287314047 81.389 0.6451 84.773 84.503 85.148 3.3839 113 74 2 0 0 0 0.82752 1 20264 20264 2.3027 0.24298 1 161130 + 43209 24084 27346 27358 49605 49605 0.08551715602800414 TANRRRIYI 9 Unmodified _TANRRRIYI_ 0 0 0 REV__HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|12|3|sense REV__HERVL74-int_dup280|chr15:30854792-30855191:+|1.049266990824102|0.0041627321625233|7.98|149.0|12|3|sense MSMS UPN48_class_I_Rep_1 5 581.843017578125 2 581.843813 1161.67307 NaN NaN NaN NaN NaN NaN NaN 89.456 1 93.082 92.582 93.582 3.6255 0 0 0 0.39518 1 21484 21484 1.8442 0.36234 1 + 43210 23922 27347 27359 49606 49606 0.09870436476990108 TAPRKDISL 9 Unmodified _TAPRKDISL_ 0 0 0 HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|19|2|sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|19|2|sense HERVIP10B3-int_dup221|chr20:41597270-41599672:+|1.6526473246477582|0.0358832080735942|5.53|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 500.7952880859375 2 500.792924 999.571294 NaN NaN NaN NaN NaN NaN NaN 60.102 1 63.619 63.119 64.119 3.5169 0 0 0 0.38784 1 13175 13175 3.5965 1.019 1 43211 8189 27348 27360 49607 49607 0.07149145334562945 TAQKYLKKQ 9 Unmodified _TAQKYLKKQ_ 0 0 0 MER2_dup996|chr2:86550673-86551006:+|1.300430480862524|0.1954948339041254|2.73|151.0|7|3|sense MER2_dup996|chr2:86550673-86551006:+|1.300430480862524|0.1954948339041254|2.73|151.0|7|3|sense MER2_dup996|chr2:86550673-86551006:+|1.300430480862524|0.1954948339041254|2.73|151.0|7|3|sense MSMS UPN48_class_I_Rep_3 7 554.3297729492188 2 554.329673 1106.64479 NaN NaN NaN NaN NaN NaN NaN 110.81 1 114.47 113.97 114.97 3.6654 0 0 0 0.4007 1 26288 26288 0.52476 0 1 43212 15831 27349 27361 49608 49608 0.09573693777042536 TAQLLRRL 8 Unmodified _TAQLLRRL_ 0 0 0 ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1 ENSG00000075275|ENST00000674500|CELSR1 ENSG00000075275|ENST00000674500|CELSR1 MSMS UPN48_class_I_Rep_1 5 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 115.48 1 119.11 118.61 119.61 3.6282 0 0 0 0.40625 1 28096 28096 2.3027 0 1 43213 1143 27350 27362 49609 49609 0.12232861670997863 TAQRQPPVV 9 Unmodified _TAQRQPPVV_ 0 0 0 REV__nc|ENSG00000124783|P43307-2|SSR1 REV__nc|ENSG00000124783|P43307-2|SSR1 MSMS UPN48_class_I_Rep_3 7 498.2857971191406 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 21.22 1 24.887 24.387 25.387 3.6667 0 0 0 0.39518 1 1954 1954 1.8442 1.0506 1 + 43214 18818 27351 27363 49610 49610 0.05848278537382612 TARAHPAK 8 Unmodified _TARAHPAK_ 0 0 0 ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 MULTI-MSMS UPN48_class_I_Rep_1 5 426.24591064453125 2 426.245944 850.477334 -0.078848 -3.3609E-05 0.14421 6.147E-05 0.065364 2.7861E-05 426.24593724159837 82.881 1.5692 86.469 85.518 87.087 3.5871 310 184 2 0 0 0 0.82752 5 19730 19664;19698;19730;19760;19796 8.5933 0 1 450170 43215 2018 27352 27364 49611;49612;49613;49614;49615 49613 0.0461147102294035 TARAHPAK 8 Unmodified _TARAHPAK_ 0 0 0 ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 MULTI-MSMS UPN48_class_I_Rep_2 6 426.2460021972656 2 426.245944 850.477334 0.079079 3.3707E-05 0.021559 9.1896E-06 0.10064 4.2897E-05 426.2459070253367 82.525 1.2335 86.194 85.517 86.751 3.669 290 157 2 0 0 0 0.82752 5 19536 19536;19566;19597;19625;19654 4.756 0 1 422580 43216 2018 27352 27364 49616;49617;49618;49619;49620 49616 0.0461147102294035 TARAHPAK 8 Unmodified _TARAHPAK_ 0 0 0 ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 MULTI-MSMS UPN48_class_I_Rep_3 7 426.2459716796875 2 426.245944 850.477334 0.15118 6.4439E-05 -0.089679 -3.8226E-05 0.061499 2.6214E-05 426.24586441055254 82.389 1.759 86.096 85.505 87.264 3.7066 336 227 2 0 0 0 0.82752 6 19483 19483;19518;19549;19583;19609;19645 4.756 0 1 341790 43217 2018 27352 27364 49621;49622;49623;49624;49625;49626 49621 0.0461147102294035 TARAHPAK 8 Unmodified _TARAHPAK_ 0 0 0 ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 426.245944 850.477334 -0.40354 -0.00017201 0.91263 0.00038901 0.50909 0.000217 426.24615653576456 83.226 0.20279 86.638 86.508 86.711 3.4116 -0.081247 0.00065812 NaN 8.5933 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 96597 43218 2018 27352 27364 0.0461147102294035 TARAHPAK 8 Unmodified _TARAHPAK_ 0 0 0 ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 426.245944 850.477334 -0.49685 -0.00021178 0.65031 0.00027719 0.15345 6.541E-05 426.2461728272165 83.533 0.094658 86.883 86.808 86.903 3.35 0.16324 0.00043449 NaN 8.5933 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 33260 43219 2018 27352 27364 0.0461147102294035 TARKKQHN 8 Unmodified _TARKKQHN_ 0 0 0 REV__nc|ENSG00000168280|O60282-2|KIF5C REV__nc|ENSG00000168280|O60282-2|KIF5C MSMS UPN48_class_I_Rep_1 5 491.7959289550781 2 491.780682 981.546811 NaN NaN NaN NaN NaN NaN NaN 46.174 1 49.693 49.193 50.193 3.5192 0 0 0 0.40404 1 8987 8987 5.2307 0 1 + 43220 20268 27353 27365 49627 49627 0.055299299717034955 TARKPALR 8 Unmodified _TARKPALR_ 0 0 0 REV__ENST00000518563.5_3_8:42249167-42251383:+|nuORF REV__ENST00000518563.5_3_8:42249167-42251383:+|nuORF MSMS UPN48_class_I_Rep_1 5 456.7906188964844 2 456.790518 911.566484 NaN NaN NaN NaN NaN NaN NaN 119.37 1 122.99 122.49 123.49 3.6189 0 0 0 0.40746 1 29133 29133 0.69038 0 1 + 43221 22769 27354 27366 49628 49628 0.10716305982464291 TARLIEHIR 9 Unmodified _TARLIEHIR_ 0 0 0 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 ENSG00000095574|ENST00000368886|IKZF5 MSMS UPN47_class_I_Rep_2 3 554.8326416015625 2 554.832914 1107.65128 NaN NaN NaN NaN NaN NaN NaN 85.676 1 89.109 88.609 89.609 3.4329 0 0 0 0.39518 1 21315 21315 1.8442 0 1 43222 1414 27355 27367 49629 49629 0.10175631728407097 TARPIIILLK 10 Unmodified _TARPIIILLK_ 0 0 0 REV__L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|15|1|sense REV__L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|15|1|sense MSMS UPN47_class_I_Rep_3 4 569.2561645507812 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 69.754 1 72.958 72.458 73.458 3.2044 0 0 0 0.53105 1 17026 17026 0.35063 0 1 + 43223 24435 27356 27368 49630 49630 0.20160307121614096 TARRGRGRG 9 Unmodified _TARRGRGRG_ 0 0 0 ENST00000551836.5_1_14:105941199-105945070:+|nuORF ENST00000551836.5_1_14:105941199-105945070:+|nuORF ENST00000551836.5_1_14:105941199-105945070:+|nuORF MSMS UPN46_class_I_Rep_3 1 493.7894592285156 2 493.789373 985.564192 NaN NaN NaN NaN NaN NaN NaN 105.3 1 105.3 104.8 105.8 0 0 0 0 0.4029 1 25688 25688 0 0 1 43224 7403 27357 27369 49631 49631 0.07083270297391664 TARRGRGRG 9 Unmodified _TARRGRGRG_ 0 0 0 ENST00000551836.5_1_14:105941199-105945070:+|nuORF ENST00000551836.5_1_14:105941199-105945070:+|nuORF ENST00000551836.5_1_14:105941199-105945070:+|nuORF MSMS UPN48_class_I_Rep_1 5 494.2244873046875 2 493.789373 985.564192 NaN NaN NaN NaN NaN NaN NaN 22.126 1 25.679 25.179 26.179 3.5533 0 0 0 0.4029 1 2118 2118 0 0 1 43225 7403 27357 27369 49632 49632 0.07083270297391664 TARRMWQENG 10 Unmodified _TARRMWQENG_ 0 0 0 LTR5B_dup233|chr10:87266813-87267810:+|2.1856487847513977|0.0569387279350655|5.26|151.0|48|3|anti-sense;LTR5B_dup232|chr10:79744593-79745590:+|1.2435940580295612|0.037723124705404|5.04|139.0|48|3|anti-sense LTR5B_dup233|chr10:87266813-87267810:+|2.1856487847513977|0.0569387279350655|5.26|151.0|48|3|anti-sense LTR5B_dup233|chr10:87266813-87267810:+|2.1856487847513977|0.0569387279350655|5.26|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_2 3 624.798828125 2 624.798746 1247.58294 NaN NaN NaN NaN NaN NaN NaN 57.09 1 60.381 59.881 60.881 3.2912 0 0 0 0.53105 1 13119 13119 1.4819 0 1 43226 15686 27358 27370 49633 49633 -0.030949809137609918 TARRPPVG 8 Unmodified _TARRPPVG_ 0 0 0 REV__nc|ENSG00000234414|P0DJD3-3|RBMY1A1 REV__nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MULTI-MSMS UPN46_class_I_Rep_3 1 427.25372314453125 2 427.253769 852.492984 0.11222 4.7947E-05 -0.18114 -7.7392E-05 -0.068918 -2.9445E-05 427.25375335724 82.188 0.72058 82.188 81.895 82.616 0 167 65 3 0 0 0 0.82752 1 19498 19498 4.3292 4.3292 1 1312500 + 43227 20327 27359 27371 49634 49634 0.06083757540000079 TARRQAPL 8 Unmodified _TARRQAPL_ 0 0 0 REV__ENST00000512593.5_1_5:176817073-176817265:+|nuORF REV__ENST00000512593.5_1_5:176817073-176817265:+|nuORF MSMS UPN47_class_I_Rep_3 4 456.772216796875 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 78.432 1 81.713 81.213 82.213 3.2816 0 0 0 0.40738 1 19560 19560 0.79363 0 1 + 43228 22748 27360 27372 49635 49635 0.07079429085752054 TARRRRRR 8 Unmodified _TARRRRRR_ 0 0 0 REV__ENSG00000171786|ENST00000302101|NHLH1 REV__ENSG00000171786|ENST00000302101|NHLH1 MSMS UPN48_class_I_Rep_3 7 564.35888671875 2 564.358288 1126.70202 NaN NaN NaN NaN NaN NaN NaN 72.529 1 76.066 75.566 76.566 3.5373 0 0 0 0.40753 1 16911 16911 0.6015 0 1 + 43229 20422 27361 27373 49636 49636 0.14374018616626927 TASPSIKSS 9 Unmodified _TASPSIKSS_ 0 0 0 nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 MSMS UPN48_class_I_Rep_1 5 439.2360534667969 2 439.234907 876.455261 NaN NaN NaN NaN NaN NaN NaN 94.576 1 98.193 97.693 98.693 3.6167 0 0 0 0.29868 1 22762 22762 10.824 1.4765 1 43230 2848 27362 27374 49637 49637 0.012092017638678954 TASRLGPYVL 10 Unmodified _TASRLGPYVL_ 0 0 0 ENSG00000101255|ENST00000217233|TRIB3 ENSG00000101255|ENST00000217233|TRIB3 ENSG00000101255|ENST00000217233|TRIB3 MULTI-MSMS UPN48_class_I_Rep_1 5 538.8090209960938 2 538.808574 1075.60259 0.4144 0.00022328 0.12226 6.5876E-05 0.53666 0.00028916 538.8085463167658 55.035 0.18461 58.544 58.374 58.558 3.5082 16 10 2 0 0 0 0.53794 1 11681 11681 7.1017 0.89594 1 178680 43231 1561 27363 27375 49638 49638 0.06781718368665679 TASRTVRNK 9 Unmodified _TASRTVRNK_ 0 0 0 chr14:105922344-105922545|49|19.82|0.1|7.57|+|0|TE_info:MLT1A1,MLT1A1_dup5670,ERVL-MaLR,LTR,acceptor,+,105922545,105922722|FAM30A,None|1 chr14:105922344-105922545|49|19.82|0.1|7.57|+|0|TE_info:MLT1A1,MLT1A1_dup5670,ERVL-MaLR,LTR,acceptor,+,105922545,105922722|FAM30A,None|1 chr14:105922344-105922545|49|19.82|0.1|7.57|+|0|TE_info:MLT1A1,MLT1A1_dup5670,ERVL-MaLR,LTR,acceptor,+,105922545,105922722|FAM30A,None|1 MSMS UPN47_class_I_Rep_3 4 516.8153686523438 2 516.799072 1031.58359 NaN NaN NaN NaN NaN NaN NaN 25.715 1 29.063 28.563 29.563 3.3478 0 0 0 0.39518 1 3657 3657 1.8442 0 1 43232 587 27364 27376 49639 49639 0.06906181797603494 TATIGKWKGF 10 Unmodified _TATIGKWKGF_ 0 0 0 REV__HERVIP10F-int_dup214|chr15:34155232-34159369:-|3.730186243385989|0.0946228886065392|5.3|151.0|91|2|sense REV__HERVIP10F-int_dup214|chr15:34155232-34159369:-|3.730186243385989|0.0946228886065392|5.3|151.0|91|2|sense MSMS UPN48_class_I_Rep_2 6 554.8106689453125 2 554.811116 1107.60768 NaN NaN NaN NaN NaN NaN NaN 42.026 1 45.784 45.284 46.284 3.7579 0 0 0 0.53105 1 7733 7733 1.6526 0 1 + 43233 23755 27365 27377 49640 49640 0.05818022231255782 TATLWIAVF 9 Unmodified _TATLWIAVF_ 0 0 0 nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4;ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MULTI-MSMS UPN48_class_I_Rep_1 5 511.2894592285156 2 511.289485 1020.56442 0.23758 0.00012147 -0.2905 -0.00014853 -0.052924 -2.7059E-05 511.28939365172374 89.151 0.14868 92.774 92.7 92.848 3.6229 29 15 2 0 0 0 0.33654 1 21395 21395 11.64 0 1 141710 43234 3162 27366 27378 49641 49641 0.0549583245398253 TATLWIAVF 9 Unmodified _TATLWIAVF_ 0 0 0 nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4;ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MULTI-MSMS UPN48_class_I_Rep_1 5 511.2891540527344 2 511.289485 1020.56442 0.23746 0.00012141 -0.17206 -8.7973E-05 0.065399 3.3438E-05 511.2892109028336 89.298 0.12572 92.924 92.865 92.991 3.6255 21 14 2 0 0 0 0.33654 1 21429 21429 11.64 0 1 94530 43235 3162 27366 27378 49642 49642 0.0549583245398253 TATLWIAVF 9 Unmodified _TATLWIAVF_ 0 0 0 nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4;ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MULTI-MSMS UPN48_class_I_Rep_2 6 511.2890930175781 2 511.289485 1020.56442 0.32179 0.00016453 -0.038204 -1.9533E-05 0.28359 0.00014499 511.2893476244456 89.033 0.86781 92.771 92.35 93.218 3.7379 172 103 3 0 0 0 0.46869 1 21283 21283 3.9444 0 1 617390 43236 3162 27366 27378 49643 49643 0.0549583245398253 TATPTHLHI 9 Unmodified _TATPTHLHI_ 0 0 0 MER58A_dup6406|chr8:127895770-127895972:-|1.0695802790176967|0.0631298473664462|4.08|150.0|3|2|sense MER58A_dup6406|chr8:127895770-127895972:-|1.0695802790176967|0.0631298473664462|4.08|150.0|3|2|sense MER58A_dup6406|chr8:127895770-127895972:-|1.0695802790176967|0.0631298473664462|4.08|150.0|3|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29583740234375 2 495.771991 989.529429 0.2509 0.00012439 0.50496 0.00025034 0.75586 0.00037473 495.7720874123013 39.275 0.57046 39.275 39.028 39.598 0 96 57 2 0 0 0 0.41259 2 7519 7519;7573 7.2892 1.0834 1 317400 43237 16137 27367 27379 49644;49645 49644 0.03424589646044751 TATRTILYVTM 11 Unmodified _TATRTILYVTM_ 0 0 0 REV__MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|22|1|anti-sense REV__MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_2 6 635.385009765625 2 635.347206 1268.67986 NaN NaN NaN NaN NaN NaN NaN 89.491 1 93.234 92.734 93.734 3.7436 0 0 0 0.38417 1 21324 21324 1.1933 0.66858 1 + 43238 31320 27368 27380 49646 49646 0.056265685226662754 TATSLDGHRKY 11 Unmodified _TATSLDGHRKY_ 0 0 0 REV__ENSG00000173210|ENST00000309868|ABLIM3 REV__ENSG00000173210|ENST00000309868|ABLIM3 MSMS UPN47_class_I_Rep_3 4 416.8824462890625 3 416.882559 1247.62585 NaN NaN NaN NaN NaN NaN NaN 26.656 1 30.003 29.503 30.503 3.3478 0 0 0 0.38417 1 3932 3932 2.6312 0.72486 1 + 43239 20477 27369 27381 49647 49647 0.011941124153509008 TATTEQVK 8 Unmodified _TATTEQVK_ 0 0 0 nc|ENSG00000147526|O75410-4|TACC1 nc|ENSG00000147526|O75410-4|TACC1 nc|ENSG00000147526|O75410-4|TACC1 MSMS UPN48_class_I_Rep_1 5 439.236572265625 2 439.234907 876.455261 NaN NaN NaN NaN NaN NaN NaN 93.935 1 97.556 97.056 98.056 3.6208 0 0 0 0.39996 1 22593 22593 7.9102 0 1 43240 16705 27370 27382 49648 49648 0.012092017638678954 TATVCQLPCW 10 Unmodified _TATVCQLPCW_ 0 0 0 REV__HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|223|1|anti-sense REV__HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|223|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 560.8154907226562 2 561.259545 1120.50454 0.41995 0.0002357 0.028725 1.6122E-05 0.44868 0.00025182 561.2597898139509 71.342 0.14902 74.632 74.562 74.711 3.2899 21 12 2 0 0 0 0.84575 1 17412 17412 1.4819 0 1 53606 + 43241 23638 27371 27383 49649 49649 -0.05089549543231442 TATYYEMH 8 Unmodified _TATYYEMH_ 0 0 0 REV__L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|4|1|sense REV__L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 508.21197509765625 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 59.66 1 62.933 62.433 63.433 3.2731 0 0 0 0.40604 1 13903 13903 2.5775 0.27475 1 + 43242 26306 27372 27384 49650 49650 -0.09494731004929235 TAVALNFVL 9 Unmodified _TAVALNFVL_ 0 0 0 L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|230|3|anti-sense L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|230|3|anti-sense L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|230|3|anti-sense MSMS UPN46_class_I_Rep_3 1 474.2823486328125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 33.623 1 33.623 33.123 34.123 0 0 0 0 0.081393 1 5903 5903 28.487 0 1 43243 15203 27373 27385 49651 49651 0.07335545936962262 TAVALNFVL 9 Unmodified _TAVALNFVL_ 0 0 0 L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|230|3|anti-sense L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|230|3|anti-sense L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|230|3|anti-sense MSMS UPN46_class_I_Rep_3 1 474.2823791503906 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 33.849 1 33.849 33.349 34.349 0 0 0 0 0.11494 1 5972 5972 21.747 4.8044 1 43244 15203 27373 27385 49652 49652 0.07335545936962262 TAVFKLSNKS 10 Unmodified _TAVFKLSNKS_ 0 0 0 L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|71|2|anti-sense L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|71|2|anti-sense L1PA16_dup12089|chr15:30875498-30876856:-|2.2694807022588623|0.0063985841417131|8.47|150.0|71|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.8153686523438 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 18.786 1 22.175 21.675 22.675 3.3898 0 0 0 0.53105 1 1648 1648 1.1933 0 1 43245 14038 27374 27386 49653 49653 0.0700970102309384 TAVFPLCVSL 10 Unmodified _TAVFPLCVSL_ 0 0 0 MLT1C_dup14425|chr13:46129739-46130149:+|1.9279955282239367|0.1708837084256241|3.5|151.0|19|1|anti-sense MLT1C_dup14425|chr13:46129739-46130149:+|1.9279955282239367|0.1708837084256241|3.5|151.0|19|1|anti-sense MLT1C_dup14425|chr13:46129739-46130149:+|1.9279955282239367|0.1708837084256241|3.5|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.3032836914062 2 525.288628 1048.5627 NaN NaN NaN NaN NaN NaN NaN 61.177 1 64.342 63.842 64.842 3.1651 0 0 0 0.53105 1 14413 14413 3.2813 0 1 43246 16298 27375 27387 49654 49654 0.04036455373739045 TAVGDAFYQN 10 Unmodified _TAVGDAFYQN_ 0 0 0 MER20B_dup3007|chr12:120869015-120869397:-|1.0312461288969628|0.0046305502491233|7.8|151.0|26|2|anti-sense MER20B_dup3007|chr12:120869015-120869397:-|1.0312461288969628|0.0046305502491233|7.8|151.0|26|2|anti-sense MER20B_dup3007|chr12:120869015-120869397:-|1.0312461288969628|0.0046305502491233|7.8|151.0|26|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 543.7820434570312 2 543.248546 1084.48254 0.17081 9.2793E-05 -0.16852 -9.155E-05 0.002289 1.2435E-06 543.2485925649646 46.333 0.30429 50.032 49.864 50.169 3.6999 23 19 2 0 0 0 0.84575 1 9813 9813 6.2058 0.47393 1 70353 43247 15842 27376 27388 49655 49655 -0.056323146957538484 TAVKIWHK 8 Unmodified _TAVKIWHK_ 0 0 0 ENST00000256015.4_1_12:92537721-92537847:-|nuORF ENST00000256015.4_1_12:92537721-92537847:-|nuORF ENST00000256015.4_1_12:92537721-92537847:-|nuORF MSMS UPN47_class_I_Rep_1 2 491.79571533203125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 40.366 1 44.033 43.533 44.533 3.6668 0 0 0 0.4044 1 7996 7996 4.756 2.1785 1 43248 5925 27377 27389 49656 49656 0.08446074267988024 TAVLLVTANV 10 Unmodified _TAVLLVTANV_ 0 0 0 ENSG00000068383|ENST00000368594|INPP5A ENSG00000068383|ENST00000368594|INPP5A ENSG00000068383|ENST00000368594|INPP5A MULTI-MSMS UPN47_class_I_Rep_2 3 500.3035583496094 2 500.8055 999.596446 0.28778 0.00014412 -0.39089 -0.00019576 -0.10311 -5.1637E-05 500.80518325536974 54.389 0.73902 57.707 57.324 58.063 3.3187 61 36 2 0 0 0 0.56333 1 12385 12385 1.4819 0 1 157320 43249 1048 27378 27390 49657 49657 0.09663200137129024 TAVLYARHVLA 11 Unmodified _TAVLYARHVLA_ 0 0 0 ENST00000573536.1_1_17:3920391-3920838:-|nuORF;ENSG00000074755|ENST00000381638|ZZEF1 ENST00000573536.1_1_17:3920391-3920838:-|nuORF ENST00000573536.1_1_17:3920391-3920838:-|nuORF MSMS UPN48_class_I_Rep_1 5 405.24029541015625 3 405.239907 1212.69789 NaN NaN NaN NaN NaN NaN NaN 91.516 1 95.142 94.642 95.642 3.626 0 0 0 0.38417 1 21990 21990 4.4062 0 1 43250 1133 27379 27391 49658 49658 0.10005071559726275 TAVTQEHEY 9 Unmodified _TAVTQEHEY_ 0 0 0 REV__L1ME3D_dup1239|chr5:55683520-55684043:-|1.1918532753262188|0.0157755563612663|6.24|151.0|18|3|sense REV__L1ME3D_dup1239|chr5:55683520-55684043:-|1.1918532753262188|0.0157755563612663|6.24|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 539.2451782226562 2 539.246003 1076.47745 -0.23135 -0.00012476 0.05041 2.7183E-05 -0.18094 -9.7572E-05 539.2459618496213 28.283 1.1941 31.617 31.215 32.409 3.3337 201 101 3 0 0 0 0.49026 1 4557 4557 1.6526 0 1 229460 + 43251 28138 27380 27392 49659 49659 -0.057726185583760525 TAVVVVPQ 8 Unmodified _TAVVVVPQ_ 0 0 0 REV__ENST00000513638.5_1_1:89875877-89876015:+|nuORF REV__ENST00000513638.5_1_1:89875877-89876015:+|nuORF MSMS UPN47_class_I_Rep_3 4 406.7489318847656 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 72.972 1 76.199 75.699 76.699 3.2271 0 0 0 0.40738 1 17993 17993 0.79363 0 1 + 43252 22753 27381 27393 49660 49660 0.06707301357096185 TAWGRRAR 8 Unmodified _TAWGRRAR_ 0 0 0 ENST00000447070.1_1_2:27579320-27579698:+|nuORF ENST00000447070.1_1_2:27579320-27579698:+|nuORF ENST00000447070.1_1_2:27579320-27579698:+|nuORF MSMS UPN46_class_I_Rep_3 1 487.2750549316406 2 487.275567 972.53658 NaN NaN NaN NaN NaN NaN NaN 105.23 1 105.23 104.73 105.73 0 0 0 0 0.40604 1 25672 25672 2.5775 0 1 43253 6796 27382 27394 49661 49661 0.049213670371159424 TAWMSTEDIMV 11 Unmodified _TAWMSTEDIMV_ 0 0 0 L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|84|2|sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|84|2|sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|84|2|sense MSMS UPN48_class_I_Rep_1 5 642.287353515625 2 642.285956 1282.55736 NaN NaN NaN NaN NaN NaN NaN 79.528 1 83.076 82.576 83.576 3.5487 0 0 0 0.37149 1 18988 18988 7.609 2.7119 1 43254 10513 27383 27395 49662 49662 -0.07261636271073257 TAWRHERF 8 Unmodified _TAWRHERF_ 0 0 0 REV__AluJr_dup33909|chr7:101860800-101861081:-|1.0978415812402589|0.0081114818719149|7.08|151.0|12|1|anti-sense REV__AluJr_dup33909|chr7:101860800-101861081:-|1.0978415812402589|0.0081114818719149|7.08|151.0|12|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.78076171875 2 551.780682 1101.54681 NaN NaN NaN NaN NaN NaN NaN 22.27 1 22.27 21.77 22.77 0 0 0 0 0.40625 1 2618 2618 2.3027 0 1 + 43255 17036 27384 27396 49663 49663 9.929971702149487E-05 TAYLSQSQFC 10 Unmodified _TAYLSQSQFC_ 0 0 0 Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.2579345703125 2 574.258056 1146.50156 0.35884 0.00020606 -0.059923 -3.4411E-05 0.29891 0.00017165 574.2579404057238 57.31 0.92665 60.747 60.415 61.342 3.437 192 79 3 0 0 0 0.31818 2 13081 13081;13221 27.629 6.0918 1 608010 43256 515 27385 27397 49664;49665 49664 -0.0658310139635887 TAYLSQSQFC 10 Unmodified _TAYLSQSQFC_ 0 0 0 Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.25830078125 2 574.258056 1146.50156 0.35987 0.00020666 -0.14096 -8.0945E-05 0.21892 0.00012571 574.2579705759196 57.629 1.0167 60.797 60.455 61.471 3.1681 194 77 4 0 0 0 0.29514 1 13370 13370 34.402 3.1334 1 718190 43257 515 27385 27397 49666 49666 -0.0658310139635887 TAYLSQSQFC 10 Unmodified _TAYLSQSQFC_ 0 0 0 Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense Charlie3_dup198|chr9:98005834-98006710:+|2.9407594805434454|0.4204129545706299|2.81|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 574.258056640625 2 574.258056 1146.50156 0.35987 0.00020666 -0.14096 -8.0945E-05 0.21892 0.00012571 574.2579705759196 57.629 1.0167 60.797 60.455 61.471 3.1681 194 77 4 0 0 0 0.84575 1 13290 13290 34.402 6.7729 1 718190 43258 515 27385 27397 49667 49667 -0.0658310139635887 TAYQIKKI 8 Unmodified _TAYQIKKI_ 0 0 0 REV__L1MC4a_dup8338|chr15:68132899-68133209:-|1.427388023561962|0.0136033571668632|6.71|151.0|11|3|sense REV__L1MC4a_dup8338|chr15:68132899-68133209:-|1.427388023561962|0.0136033571668632|6.71|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 482.79534912109375 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 28.897 1 28.897 28.397 29.397 0 0 0 0 0.40738 1 4503 4503 0.79363 0 1 + 43259 27029 27386 27398 49668 49668 0.09207234828284072 TAYRFMLV 8 Unmodified _TAYRFMLV_ 0 0 0 ENST00000547809.5_1_12:105570964-105626916:-|nuORF ENST00000547809.5_1_12:105570964-105626916:-|nuORF ENST00000547809.5_1_12:105570964-105626916:-|nuORF MSMS UPN48_class_I_Rep_2 6 500.7662658691406 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 25.888 1 29.521 29.021 30.021 3.6332 0 0 0 0.40738 1 3216 3216 0.79363 0 1 43260 7387 27387 27399 49669 49669 0.021393194050574493 TCCCFCCCCCF 11 Unmodified _TCCCFCCCCCF_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS UPN48_class_I_Rep_1 5 619.6416625976562 2 619.64155 1237.26855 NaN NaN NaN NaN NaN NaN NaN 62.912 1 66.374 65.874 66.874 3.4625 0 0 0 0.38417 1 14119 14119 0 0 1 43261 4040 27388 27400 49670 49670 -0.34059671633508515 TCCDGGDYNCF 11 Unmodified _TCCDGGDYNCF_ 0 0 0 REV__ENST00000483254.1_1_9:119135964-119158892:+|nuORF REV__ENST00000483254.1_1_9:119135964-119158892:+|nuORF MSMS UPN47_class_I_Rep_1 2 599.1853637695312 2 599.185916 1196.35728 NaN NaN NaN NaN NaN NaN NaN 23.553 1 27.283 26.783 27.783 3.7298 0 0 0 0.38417 1 2931 2931 0 0 1 + 43262 20765 27389 27401 49671 49671 -0.23304434210331237 TCCFCWCCCCS 11 Unmodified _TCCFCWCCCCS_ 0 0 0 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 ENSG00000091844|ENST00000206262|RGS17 MSMS UPN47_class_I_Rep_3 4 631.158935546875 2 631.158421 1260.30229 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.36 117.86 118.86 3.4802 0 0 0 0.38417 1 28229 28229 0 0 1 43263 1379 27390 27402 49672 49672 -0.31744926870078416 TCEDLPYVF 9 Unmodified _TCEDLPYVF_ 0 0 0 REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1 REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1 MSMS UPN47_class_I_Rep_2 3 543.7425537109375 2 543.74425 1085.47395 NaN NaN NaN NaN NaN NaN NaN 114.61 1 118.11 117.61 118.61 3.5039 0 0 0 0.38299 1 27913 27913 4.756 0 1 + 43264 19852 27391 27403 49673 49673 -0.06537004656593126 TCEEVTYEL 9 Unmodified _TCEEVTYEL_ 0 0 0 REV__nc|ENSG00000048462|Q02223-2|TNFRSF17 REV__nc|ENSG00000048462|Q02223-2|TNFRSF17 MULTI-MSMS UPN47_class_I_Rep_2 3 543.7367553710938 2 543.736622 1085.45869 0.36146 0.00019654 -0.33636 -0.00018289 0.025101 1.3648E-05 543.7362887718338 68.708 0.48579 71.978 71.88 72.366 3.2696 51 40 2 0 0 0 0.35081 1 16741 16741 10.824 2.9138 1 150610 + 43265 17668 27392 27404 49674 49674 -0.08061916244446365 TCEEVTYEL 9 Unmodified _TCEEVTYEL_ 0 0 0 REV__nc|ENSG00000048462|Q02223-2|TNFRSF17 REV__nc|ENSG00000048462|Q02223-2|TNFRSF17 MULTI-MSMS UPN47_class_I_Rep_3 4 543.7363891601562 2 543.736622 1085.45869 0.42745 0.00023242 -0.54402 -0.00029581 -0.11657 -6.3384E-05 543.7361072181102 68.697 0.83517 71.895 71.476 72.311 3.1977 107 63 2 0 0 0 0.35081 1 16786 16786 10.824 3.5347 1 162350 + 43266 17668 27392 27404 49675 49675 -0.08061916244446365 TCGESDCC 8 Unmodified _TCGESDCC_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MSMS UPN46_class_I_Rep_3 1 409.11065673828125 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 57.689 1 57.689 57.189 58.189 0 0 0 0 0.40798 1 12655 12655 0 0 1 + 43267 20067 27393 27405 49676 49676 -0.20663120393362533 TCGESDCC 8 Unmodified _TCGESDCC_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MSMS UPN46_class_I_Rep_3 1 409.1105651855469 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 67.663 1 67.663 67.163 68.163 0 0 0 0 0.40798 1 15411 15411 0 0 1 + 43268 20067 27393 27405 49677 49677 -0.20663120393362533 TCGESDCC 8 Unmodified _TCGESDCC_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MSMS UPN46_class_I_Rep_3 1 409.10992431640625 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 95.65 1 95.65 95.15 96.15 0 0 0 0 0.40798 1 23233 23233 0 0 1 + 43269 20067 27393 27405 49678 49678 -0.20663120393362533 TCGESDCC 8 Unmodified _TCGESDCC_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MSMS UPN48_class_I_Rep_1 5 409.1107482910156 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 48.465 1 51.989 51.489 52.489 3.5239 0 0 0 0.40798 1 9690 9690 0 0 1 + 43270 20067 27393 27405 49679 49679 -0.20663120393362533 TCHHKRKR 8 Unmodified _TCHHKRKR_ 0 0 0 REV__ENST00000454990.5_1_14:45711969-45712041:-|nuORF REV__ENST00000454990.5_1_14:45711969-45712041:-|nuORF MSMS UPN46_class_I_Rep_3 1 533.2987670898438 2 533.295976 1064.5774 NaN NaN NaN NaN NaN NaN NaN 110.14 1 110.14 109.64 110.64 0 0 0 0 0.4044 1 27112 27112 4.756 0 1 + 43271 22403 27394 27406 49680 49680 0.04769385085091926 TCHSSTYSLQA 11 Unmodified _TCHSSTYSLQA_ 0 0 0 ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF MSMS UPN48_class_I_Rep_1 5 599.265380859375 2 599.26387 1196.51319 NaN NaN NaN NaN NaN NaN NaN 113.24 1 116.87 116.37 117.37 3.6314 0 0 0 0.38417 1 27503 27503 1.0715 0 1 43272 7103 27395 27407 49681 49681 -0.07720904373013582 TCHSVPFNW 9 Unmodified _TCHSVPFNW_ 0 0 0 L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|169|3|anti-sense;L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|144|1|anti-sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|169|3|anti-sense L1PA14_dup1093|chr5:81996963-82000000:+|2.9732286990025694|0.0514047556208129|5.85|151.0|169|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.7726440429688 2 545.742376 1089.4702 NaN NaN NaN NaN NaN NaN NaN 114.93 1 118.51 118.01 119.01 3.5809 0 0 0 0.39518 1 28416 28416 1.8442 0.36234 1 43273 13817 27396 27408 49682 49682 -0.07095629639798062 TCIVIDSCVY 10 Unmodified _TCIVIDSCVY_ 0 0 0 REV__ENST00000571589.5_1_16:14356081-14356159:+|nuORF REV__ENST00000571589.5_1_16:14356081-14356159:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 558.7608642578125 2 558.25921 1114.50387 0.38485 0.00021485 -0.1767 -9.8642E-05 0.20815 0.0001162 558.2590507462457 72.358 0.72503 75.738 75.39 76.115 3.3799 134 55 3 0 0 0 0.51565 1 17784 17784 10.074 10.074 1 724400 + 43274 23090 27397 27409 49683 49683 -0.0488038898290597 TCKCMHMCNC 10 Unmodified _TCKCMHMCNC_ 0 0 0 REV__L1M5_dup18062|chr5:131415603-131416324:+|1.0707126518418322|0.0582938534007015|4.2|151.0|15|2|sense REV__L1M5_dup18062|chr5:131415603-131416324:+|1.0707126518418322|0.0582938534007015|4.2|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 587.1937255859375 2 587.193653 1172.37275 NaN NaN NaN NaN NaN NaN NaN 118.88 1 122.3 121.8 122.8 3.4157 0 0 0 0.53105 1 29339 29339 0 0 1 + 43275 24626 27398 27410 49684 49684 -0.20653885490082757 TCKGQRCISTC 11 Unmodified _TCKGQRCISTC_ 0 0 0 REV__ENSG00000178971|ENST00000651323|CTC1 REV__ENSG00000178971|ENST00000651323|CTC1 MULTI-MSMS UPN47_class_I_Rep_1 2 600.2686157226562 2 600.270118 1198.52568 0.33882 0.00020338 0.27019 0.00016219 0.60901 0.00036557 600.26982292156 53.786 0.67683 57.314 57.048 57.725 3.5278 86 38 3 0 0 0 0.295 1 12046 12046 16.149 0 1 175730 + 43276 20665 27399 27411 49685 49685 -0.0656390750598348 TCKGQRCISTC 11 Unmodified _TCKGQRCISTC_ 0 0 0 REV__ENSG00000178971|ENST00000651323|CTC1 REV__ENSG00000178971|ENST00000651323|CTC1 MULTI-MSMS UPN47_class_I_Rep_2 3 600.2700805664062 2 600.270118 1198.52568 0.51698 0.00031033 -0.2002 -0.00012018 0.31677 0.00019015 600.2695517378296 54.074 0.81628 57.393 57.083 57.899 3.3187 102 45 3 0 0 0 0.27122 2 12225 12178;12225 18.373 1.2602 1 212260 + 43277 20665 27399 27411 49686;49687 49687 -0.0656390750598348 TCKGQRCISTC 11 Unmodified _TCKGQRCISTC_ 0 0 0 REV__ENSG00000178971|ENST00000651323|CTC1 REV__ENSG00000178971|ENST00000651323|CTC1 MULTI-MSMS UPN47_class_I_Rep_3 4 600.2684326171875 2 600.270118 1198.52568 0.46315 0.00027801 -0.12414 -7.4517E-05 0.33901 0.0002035 600.2696373419519 54.177 0.79766 57.363 57.09 57.888 3.1856 89 50 2 0 0 0 0.3053 1 12302 12302 23.79 3.3752 1 248330 + 43278 20665 27399 27411 49688 49688 -0.0656390750598348 TCKRLKPP 8 Unmodified _TCKRLKPP_ 0 0 0 REV__ENSG00000226650|ENST00000435029|KIF4B REV__ENSG00000226650|ENST00000435029|KIF4B MSMS UPN48_class_I_Rep_2 6 471.79510498046875 2 471.781305 941.548056 NaN NaN NaN NaN NaN NaN NaN 117.43 1 121.1 120.6 121.6 3.6607 0 0 0 0.40746 1 28146 28146 0.69038 0 1 + 43279 21293 27400 27412 49689 49689 0.07494428016241272 TCKRLKPP 8 Unmodified _TCKRLKPP_ 0 0 0 REV__ENSG00000226650|ENST00000435029|KIF4B REV__ENSG00000226650|ENST00000435029|KIF4B MSMS UPN48_class_I_Rep_2 6 471.7951965332031 2 471.781305 941.548056 NaN NaN NaN NaN NaN NaN NaN 118.6 1 122.26 121.76 122.76 3.6627 0 0 0 0.40746 1 28440 28440 0.69038 0 1 + 43280 21293 27400 27412 49690 49690 0.07494428016241272 TCKRLKPP 8 Unmodified _TCKRLKPP_ 0 0 0 REV__ENSG00000226650|ENST00000435029|KIF4B REV__ENSG00000226650|ENST00000435029|KIF4B MSMS UPN48_class_I_Rep_2 6 471.7957763671875 2 471.781305 941.548056 NaN NaN NaN NaN NaN NaN NaN 118.87 1 122.54 122.04 123.04 3.6652 0 0 0 0.40746 1 28513 28513 0.69038 0 1 + 43281 21293 27400 27412 49691 49691 0.07494428016241272 TCLFCCMLSN 10 Unmodified _TCLFCCMLSN_ 0 0 0 L1MEb_dup1386|chr14:73293943-73294207:-|1.435193729299369|0.1071987192679166|3.74|151.0|14|2|anti-sense L1MEb_dup1386|chr14:73293943-73294207:-|1.435193729299369|0.1071987192679166|3.74|151.0|14|2|anti-sense L1MEb_dup1386|chr14:73293943-73294207:-|1.435193729299369|0.1071987192679166|3.74|151.0|14|2|anti-sense MSMS UPN47_class_I_Rep_1 2 567.726318359375 2 567.726166 1133.43778 NaN NaN NaN NaN NaN NaN NaN 119.12 1 122.72 122.22 123.22 3.6036 0 0 0 0.53105 1 29587 29587 1.3295 0.5359 1 43282 12982 27401 27413 49692 49692 -0.12360244420960953 TCLLMRKIK 9 Unmodified _TCLLMRKIK_ 0 0 0 Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|65|3|anti-sense Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|65|3|anti-sense Cheshire_dup29|chr1:88882466-88883432:-|1.837497109344825|0.0927706881477322|4.31|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.3325805664062 2 553.332847 1104.65114 0.57135 0.00031614 -0.9221 -0.00051023 -0.35076 -0.00019408 553.3322526942787 88.032 0.55297 91.479 91.23 91.783 3.4471 90 66 2 0 0 0 0.50088 1 21958 21958 0.52476 0 1 138470 43283 549 27402 27414 49693 49693 0.10300172412530628 TCNMCEEDCNS 11 Unmodified _TCNMCEEDCNS_ 0 0 0 REV__nc|ENSG00000160963|Q96A83-2|COL26A1 REV__nc|ENSG00000160963|Q96A83-2|COL26A1 MSMS UPN47_class_I_Rep_3 4 416.7560119628906 3 416.792708 1247.35629 NaN NaN NaN NaN NaN NaN NaN 117.07 1 120.51 120.01 121.01 3.4425 0 0 0 0.38417 1 28826 28826 0 0 1 + 43284 19899 27403 27415 49694 49694 -0.257490166414982 TCNSSNQFIY 10 Unmodified _TCNSSNQFIY_ 0 0 0 REV__L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|15|1|sense REV__L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 588.7536010742188 2 588.753138 1175.49172 NaN NaN NaN NaN NaN NaN NaN 37.896 1 41.561 41.061 42.061 3.6652 0 0 0 0.53105 1 7244 7244 1.3295 0.5359 1 + 43285 27870 27404 27416 49695 49695 -0.08900289401708505 TCPPGYGGFHC 11 Unmodified _TCPPGYGGFHC_ 0 0 0 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 MSMS UPN47_class_I_Rep_3 4 569.7260131835938 2 569.725869 1137.43719 NaN NaN NaN NaN NaN NaN NaN 68.36 1 71.558 71.058 72.058 3.1977 0 0 0 0.38417 1 16606 16606 2.9952 0 1 43286 1126 27405 27417 49696 49696 -0.12603579754136263 TCSALTEMDE 10 Unmodified _TCSALTEMDE_ 0 0 0 REV__ENST00000556925.5_1_14:50264161-50281481:-|nuORF REV__ENST00000556925.5_1_14:50264161-50281481:-|nuORF MSMS UPN48_class_I_Rep_3 7 550.2178955078125 2 550.21774 1098.42093 NaN NaN NaN NaN NaN NaN NaN 48.015 1 51.649 51.149 52.149 3.6339 0 0 0 0.53105 1 9485 9485 1.4819 0.68827 1 + 43287 20123 27406 27418 49697 49697 -0.12434750501574854 TCSSDGMGFHC 11 Unmodified _TCSSDGMGFHC_ 0 0 0 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 MSMS UPN48_class_I_Rep_2 6 572.822265625 2 572.696451 1143.37835 NaN NaN NaN NaN NaN NaN NaN 48.016 1 51.752 51.252 52.252 3.7361 0 0 0 0.38417 1 9548 9548 0 0 1 43288 1126 27407 27419 49698 49698 -0.187604241107465 TCSSHLVVVI 10 Unmodified _TCSSHLVVVI_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MSMS UPN47_class_I_Rep_2 3 529.2905883789062 2 529.289159 1056.56377 NaN NaN NaN NaN NaN NaN NaN 63.959 1 67.215 66.715 67.715 3.2556 0 0 0 0.53105 1 15204 15204 3.5965 0 1 43289 5237 27408 27420 49699 49699 0.037746697426428 TCTNKIEVSY 10 Unmodified _TCTNKIEVSY_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MSMS UPN47_class_I_Rep_3 4 579.261474609375 2 579.278989 1156.54342 NaN NaN NaN NaN NaN NaN NaN 68.782 1 71.98 71.48 72.48 3.1977 0 0 0 0.53105 1 16734 16734 10.074 2.1638 1 + 43290 21367 27409 27421 49700 49700 -0.028585457078406762 TCTYTDKYCC 10 Unmodified _TCTYTDKYCC_ 0 0 0 REV__L1PA5_dup9087|chr13:109441493-109445948:-|1.5678993567053352|0.0209782001132637|6.22|145.0|53|1|sense REV__L1PA5_dup9087|chr13:109441493-109445948:-|1.5678993567053352|0.0209782001132637|6.22|145.0|53|1|sense MSMS UPN48_class_I_Rep_1 5 400.8163757324219 3 400.817182 1199.42972 NaN NaN NaN NaN NaN NaN NaN 13.732 1 17.248 16.748 17.748 3.5156 0 0 0 0.53105 1 291 291 0.13989 0 1 + 43291 29595 27410 27422 49701 49701 -0.16202100136729314 TCWRCCCCCCA 11 Unmodified _TCWRCCCCCCA_ 0 0 0 REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF MSMS UPN46_class_I_Rep_3 1 628.1241455078125 2 627.677313 1253.34007 NaN NaN NaN NaN NaN NaN NaN 52.072 1 52.072 51.572 52.572 0 0 0 0 0.38417 1 11111 11111 0 0 1 + 43292 22775 27411 27423 49702 49702 -0.27646415884601083 TCWSCPRLKQS 11 Unmodified _TCWSCPRLKQS_ 0 0 0 REV__ENST00000431259.6_1_2:179396142-179402334:+|nuORF REV__ENST00000431259.6_1_2:179396142-179402334:+|nuORF MSMS UPN48_class_I_Rep_1 5 436.87945556640625 3 436.877764 1307.61146 NaN NaN NaN NaN NaN NaN NaN 62.696 1 66.158 65.658 66.658 3.4625 0 0 0 0.38417 1 14053 14053 0.50596 0.051438 1 + 43293 22293 27412 27424 49703 49703 -0.030039993288255573 TCYILIHAY 9 Unmodified _TCYILIHAY_ 0 0 0 L1MA4_dup1999|chr3:149931558-149932328:-|1.84166321013766|0.0394077939867932|5.55|151.0|35|2|anti-sense L1MA4_dup1999|chr3:149931558-149932328:-|1.84166321013766|0.0394077939867932|5.55|151.0|35|2|anti-sense L1MA4_dup1999|chr3:149931558-149932328:-|1.84166321013766|0.0394077939867932|5.55|151.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.7948608398438 2 548.778428 1095.5423 0.49944 0.00027408 -0.64447 -0.00035367 -0.14504 -7.9593E-05 548.7780586288621 58.891 0.89858 62.173 61.76 62.658 3.2818 143 57 3 0 0 0 0.12799 1 13744 13744 28.487 0 1 428710 43294 9660 27413 27425 49704 49704 -0.0016471528608690278 TCYWSVQGF 9 Unmodified _TCYWSVQGF_ 0 0 0 L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|286|3|anti-sense L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|286|3|anti-sense L1P2_dup95|chr1:169279838-169284820:-|1.5845977102563087|0.0646530618739195|4.62|151.0|286|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.7365112304688 2 545.73676 1089.45897 NaN NaN NaN NaN NaN NaN NaN 117.63 1 121.23 120.73 121.73 3.6036 0 0 0 0.39428 1 29167 29167 2.0598 0 1 43295 13511 27414 27426 49705 49705 -0.08218451733932852 TDALNRWS 8 Unmodified _TDALNRWS_ 0 0 0 REV__L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|15|1|sense REV__L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 481.73785400390625 2 481.738148 961.461744 -0.34088 -0.00016422 0.30485 0.00014686 -0.036033 -1.7359E-05 481.73822921869106 23.676 0.52045 27.406 27.157 27.678 3.7298 58 43 2 0 0 0 0.82752 3 2914 2914;2953;2996 10.824 0 1 65192 + 43296 26760 27415 27427 49706;49707;49708 49706 -0.020528602847548427 TDALNRWS 8 Unmodified _TDALNRWS_ 0 0 0 REV__L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|15|1|sense REV__L1MC3_dup5152|chr6:161055654-161056931:-|1.5455578476154912|0.0980319834557148|3.98|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 481.7381896972656 2 481.738148 961.461744 -0.61784 -0.00029764 0.57261 0.00027585 -0.045233 -2.179E-05 481.73837933058735 24.073 0.64686 27.423 27.053 27.7 3.3509 68 49 2 0 0 0 0.82752 3 3110 3110;3118;3188 10.824 0 1 62565 + 43297 26760 27415 27427 49709;49710;49711 49709 -0.020528602847548427 TDAYHRSI 8 Unmodified _TDAYHRSI_ 0 0 0 REV__ENST00000403263.5_1_2:206867288-206867456:-|nuORF REV__ENST00000403263.5_1_2:206867288-206867456:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 481.73785400390625 2 481.738148 961.461744 -0.20497 -9.8742E-05 -0.14424 -6.9487E-05 -0.34921 -0.00016823 481.7379859207233 23.803 0.57437 27.269 27.039 27.614 3.4655 74 46 2 0 0 0 0.82752 2 3080 3036;3080 10.824 0 1 70310 + 43298 22164 27416 27428 49712;49713 49713 -0.020528602847662114 TDAYNPQPF 9 Unmodified _TDAYNPQPF_ 0 0 0 REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 MULTI-MSMS UPN47_class_I_Rep_2 3 526.7378540039062 2 526.737814 1051.46108 0.14917 7.8575E-05 -0.012525 -6.5976E-06 0.13665 7.1978E-05 526.737820376383 61.416 0.51246 64.675 64.523 65.036 3.2594 34 29 2 0 0 0 0.33654 1 14505 14505 11.64 0 1 85623 + 43299 21371;21368 27417 27429 49714 49714 -0.06259699724478196 TDCCHSSE 8 Unmodified _TDCCHSSE_ 0 0 0 ENSG00000117000|ENST00000372771|RLF;ENSG00000117000.9,RLF,chr1,+,I6.1,40222711,40231516|30|10.12|1|intron;ENSG00000117000.9,RLF,chr1,+,I4.1,40195765,40202411|53|7.76|5|intron ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MSMS UPN48_class_I_Rep_3 7 440.7998046875 2 441.141835 880.269117 NaN NaN NaN NaN NaN NaN NaN 87.514 1 91.304 90.804 91.804 3.7905 0 0 0 0.40746 1 20767 20767 0.69038 0 1 43300 2206 27418 27430 49715 49715 -0.1758068673860862 TDDDGDDDDDD 11 Unmodified _TDDDGDDDDDD_ 0 0 0 nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1 nc|ENSG00000106278|P23471-2|PTPRZ1 nc|ENSG00000106278|P23471-2|PTPRZ1 MSMS UPN47_class_I_Rep_1 2 404.7911071777344 3 404.781341 1211.32219 NaN NaN NaN NaN NaN NaN NaN 78.675 1 82.121 81.621 82.621 3.4456 0 0 0 0.38417 1 19570 19570 0 0 1 43301 1779 27419 27431 49716 49716 -0.2750140373193517 TDDKIKNLL 9 Unmodified _TDDKIKNLL_ 0 0 0 REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.3060302734375 2 530.305864 1058.59717 0.39294 0.00020838 -0.90573 -0.00048032 -0.5128 -0.00027194 530.305024612925 29.182 0.5306 32.732 32.49 33.021 3.5499 89 55 2 0 0 0 0.19147 6 4053 3955;3972;3974;3986;4023;4053 21.537 0 1 138040 + 43302 29788 27420 27432 49717;49718;49719;49720;49721;49722 49722 0.07021994786191499 TDDKIKNLL 9 Unmodified _TDDKIKNLL_ 0 0 0 REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 530.3059692382812 2 530.305864 1058.59717 0.43891 0.00023276 -1.1587 -0.00061445 -0.71975 -0.00038169 530.3049642955289 29.163 0.58634 32.794 32.532 33.119 3.6316 104 63 2 0 0 0 0.19147 2 4102 4088;4102 21.537 0 1 123190 + 43303 29788 27420 27432 49723;49724 49724 0.07021994786191499 TDDKIKNLL 9 Unmodified _TDDKIKNLL_ 0 0 0 REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 530.305864 1058.59717 0.38898 0.00020628 -1.1704 -0.00062067 -0.78143 -0.0004144 530.3049744741767 29.041 0.72623 32.769 32.481 33.207 3.7286 0.0041099 -4.2766E-05 NaN 21.537 158 85 2 NaN NaN NaN NaN 0 NaN NaN 0 160720 + 43304 29788 27420 27432 0.07021994786191499 TDDQGYTL 8 Unmodified _TDDQGYTL_ 0 0 0 REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|166|1|anti-sense REV__HERVL18-int_dup91|chr2:186431739-186437781:+|1.9342634692002008|0.1273852192224686|3.92|151.0|166|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.8182373046875 2 456.700897 911.387241 NaN NaN NaN NaN NaN NaN NaN 37.209 1 40.608 40.108 41.108 3.3988 0 0 0 0.40643 1 7069 7069 2.0598 0 1 + 43305 23911 27421 27433 49725 49725 -0.07199667886800398 TDEALLTGLF 10 Unmodified _TDEALLTGLF_ 0 0 0 MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|20|1|anti-sense MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|20|1|anti-sense MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.2830810546875 2 540.284597 1078.55464 0.42012 0.00022698 -0.30784 -0.00016632 0.11228 6.0662E-05 540.284298820838 61.378 0.89506 64.759 64.406 65.301 3.3815 176 64 4 0 0 0 0.54822 1 14522 14522 5.7319 0 1 823490 43306 15807 27422 27434 49726 49726 0.018505996579506245 TDEALLTGLF 10 Unmodified _TDEALLTGLF_ 0 0 0 MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|20|1|anti-sense MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|20|1|anti-sense MER1A_dup637|chr3:197874139-197874677:+|2.186032039388496|0.4998417695873571|2.13|151.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.2850952148438 2 540.284597 1078.55464 0.41258 0.00022291 -0.3347 -0.00018083 0.077888 4.2082E-05 540.2842475202872 61.61 1.0271 64.87 64.523 65.55 3.2594 161 65 3 0 0 0 0.47413 1 14649 14649 13.906 0 1 654620 43307 15807 27422 27434 49727 49727 0.018505996579506245 TDECYDCMFD 10 Unmodified _TDECYDCMFD_ 0 0 0 REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423 REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS UPN47_class_I_Rep_2 3 621.1930541992188 2 621.193407 1240.37226 NaN NaN NaN NaN NaN NaN NaN 19.124 1 22.514 22.014 23.014 3.3898 0 0 0 0.53105 1 1743 1743 1.4819 1.4819 1 + 43308 18207 27423 27435 49728 49728 -0.23830987132987502 TDEETTLLCPH 11 Unmodified _TDEETTLLCPH_ 0 0 0 L1MA5A_dup376|chr2:61433657-61435021:+|1.0737340178107877|0.0146498187716663|6.2|151.0|28|2|sense L1MA5A_dup376|chr2:61433657-61435021:+|1.0737340178107877|0.0146498187716663|6.2|151.0|28|2|sense L1MA5A_dup376|chr2:61433657-61435021:+|1.0737340178107877|0.0146498187716663|6.2|151.0|28|2|sense MSMS UPN47_class_I_Rep_1 2 629.7860107421875 2 629.784635 1257.55472 NaN NaN NaN NaN NaN NaN NaN 32.294 1 36.007 35.507 36.507 3.7131 0 0 0 0.38417 1 5539 5539 1.4819 0.68827 1 43309 9948 27424 27436 49729 49729 -0.06375768404336668 TDERVVHFY 9 Unmodified _TDERVVHFY_ 0 0 0 REV__L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|78|1|anti-sense REV__L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|78|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.285400390625 2 583.285463 1164.55637 -0.12745 -7.434E-05 -0.92388 -0.00053888 -1.0513 -0.00061322 583.2849850419911 14.206 0.25206 17.681 17.602 17.854 3.475 50 30 2 0 0 0 0.48643 2 506 506;536 2.0598 0.86641 1 56983 + 43310 25428 27425 27437 49730;49731 49730 -0.01932346533430973 TDERVVHFY 9 Unmodified _TDERVVHFY_ 0 0 0 REV__L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|78|1|anti-sense REV__L1MA5A_dup504|chr2:159339984-159342083:+|6.165364295267455|0.3887946769115809|3.99|151.0|78|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 583.2855834960938 2 583.285463 1164.55637 0.048314 2.8181E-05 -0.99406 -0.00057982 -0.94574 -0.00055164 583.284932160815 14.38 0.27528 17.767 17.617 17.892 3.3871 57 34 2 0 0 0 0.48643 1 540 540 2.0598 0.86641 1 42100 + 43311 25428 27425 27437 49732 49732 -0.01932346533430973 TDEYSLKWM 9 Unmodified _TDEYSLKWM_ 0 0 0 REV__L1PB1_dup4798|chr6:18174470-18177538:-|2.628431024399215|0.060665745233622|5.44|151.0|32|1|sense REV__L1PB1_dup4798|chr6:18174470-18177538:-|2.628431024399215|0.060665745233622|5.44|151.0|32|1|sense MSMS UPN48_class_I_Rep_2 6 586.7681884765625 2 586.768257 1171.52196 NaN NaN NaN NaN NaN NaN NaN 26.129 1 29.762 29.262 30.262 3.6332 0 0 0 0.39428 1 3284 3284 2.0598 0 1 + 43312 30412 27426 27438 49733 49733 -0.05693930736561015 TDFCCCCCCF 10 Unmodified _TDFCCCCCCF_ 0 0 0 REV__AluJb_dup38357|chr5:139569976-139570294:+|2.770900311496359|0.0204073866275484|7.09|151.0|12|1|anti-sense REV__AluJb_dup38357|chr5:139569976-139570294:+|2.770900311496359|0.0204073866275484|7.09|151.0|12|1|anti-sense MSMS UPN46_class_I_Rep_3 1 574.1465454101562 2 574.145837 1146.27712 NaN NaN NaN NaN NaN NaN NaN 19.556 1 19.556 19.056 20.056 0 0 0 0 0.53105 1 1882 1882 0 0 1 + 43313 16942 27427 27439 49734 49734 -0.29016658401019413 TDFCCCCCCF 10 Unmodified _TDFCCCCCCF_ 0 0 0 REV__AluJb_dup38357|chr5:139569976-139570294:+|2.770900311496359|0.0204073866275484|7.09|151.0|12|1|anti-sense REV__AluJb_dup38357|chr5:139569976-139570294:+|2.770900311496359|0.0204073866275484|7.09|151.0|12|1|anti-sense MSMS UPN46_class_I_Rep_3 1 574.145751953125 2 574.145837 1146.27712 NaN NaN NaN NaN NaN NaN NaN 19.909 1 19.909 19.409 20.409 0 0 0 0 0.53105 1 1979 1979 0 0 1 + 43314 16942 27427 27439 49735 49735 -0.29016658401019413 TDFKDWHS 8 Unmodified _TDFKDWHS_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 518.3087768554688 2 518.230156 1034.44576 0.27054 0.0001402 0.40825 0.00021157 0.67879 0.00035177 518.2302426061331 39.278 0.58369 39.278 39.051 39.634 0 92 57 2 0 0 0 0.72333 1 7578 7578 15.847 1.9411 1 237950 + 43315 23627 27428 27440 49736 49736 -0.07008566521653847 TDFKDWHS 8 Unmodified _TDFKDWHS_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 518.230156 1034.44576 -0.1482 -7.68E-05 0.47977 0.00024863 0.33158 0.00017183 518.2303186278046 35.245 0.6761 38.921 38.615 39.291 3.6762 -0.08898 3.359E-05 NaN 15.847 84 46 2 NaN NaN NaN NaN 0 NaN NaN 0 180610 + 43316 23627 27428 27440 -0.07008566521653847 TDFKDWHS 8 Unmodified _TDFKDWHS_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 518.230156 1034.44576 -0.33109 -0.00017158 0.53781 0.00027871 0.20672 0.00010713 518.2303539576708 35.465 0.78442 38.876 38.579 39.363 3.4114 -0.13416 9.3738E-05 NaN 15.847 100 48 3 NaN NaN NaN NaN 0 NaN NaN 0 149040 + 43317 23627 27428 27440 -0.07008566521653847 TDFKDWHS 8 Unmodified _TDFKDWHS_ 0 0 0 REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense REV__HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|14|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 518.230156 1034.44576 -0.2446 -0.00012676 0.3248 0.00016832 0.080195 4.1559E-05 518.2303148548118 35.711 0.80695 38.966 38.566 39.373 3.2547 -0.044592 -0.00012704 NaN 15.847 96 53 3 NaN NaN NaN NaN 0 NaN NaN 0 131150 + 43318 23627 27428 27440 -0.07008566521653847 TDFLPEFY 8 Unmodified _TDFLPEFY_ 0 0 0 L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|12|1|sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|12|1|sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 516.6669311523438 2 516.239658 1030.46476 NaN NaN NaN NaN NaN NaN NaN 35.649 1 39.326 38.826 39.826 3.6762 0 0 0 0.4044 1 6563 6563 4.756 1.1595 1 43319 9919 27429 27441 49737 49737 -0.04925029950618409 TDFLPEFY 8 Unmodified _TDFLPEFY_ 0 0 0 L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|12|1|sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|12|1|sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 516.23779296875 2 516.239658 1030.46476 NaN NaN NaN NaN NaN NaN NaN 35.798 1 39.475 38.975 39.975 3.6762 0 0 0 0.39996 1 6608 6608 7.9102 1.7044 1 43320 9919 27429 27441 49738 49738 -0.04925029950618409 TDFLTQAETI 10 Unmodified _TDFLTQAETI_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MULTI-MSMS UPN48_class_I_Rep_2 6 569.7852172851562 2 569.784961 1137.55537 0.41382 0.00023579 -0.0023696 -1.3502E-06 0.41146 0.00023444 569.7847544994271 48.981 0.51648 52.698 52.496 53.013 3.7175 56 33 2 0 0 0 0.47804 1 9804 9804 13.615 0 1 154100 + 43321 20806 27430 27442 49739 49739 -0.00790605692986901 TDFLTQAETI 10 Unmodified _TDFLTQAETI_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MULTI-MSMS UPN48_class_I_Rep_3 7 569.7849731445312 2 569.784961 1137.55537 0.36391 0.00020735 0.22105 0.00012595 0.58496 0.0003333 569.7849518905239 49.194 0.51377 52.823 52.59 53.103 3.6291 60 35 2 0 0 0 0.47804 3 9804 9804;9846;9901 13.615 0.43853 1 192510 + 43322 20806 27430 27442 49740;49741;49742 49740 -0.00790605692986901 TDFSCTEFY 9 Unmodified _TDFSCTEFY_ 0 0 0 REV__L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|402|3|anti-sense REV__L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|402|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.7164916992188 2 556.71569 1111.41683 0.39934 0.00022232 -0.15242 -8.4854E-05 0.24692 0.00013746 556.7155065151271 56.25 0.56261 59.422 59.137 59.699 3.1721 58 36 2 0 0 0 0.46869 1 12906 12906 3.9444 0.3479 1 87509 + 43323 29675 27431 27443 49743 49743 -0.13442471932967237 TDFSWEEER 9 Unmodified _TDFSWEEER_ 0 0 0 ENST00000522562.5_1_5:71523001-71533927:-|nuORF;ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27 ENST00000522562.5_1_5:71523001-71533927:-|nuORF ENST00000522562.5_1_5:71523001-71533927:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 599.7534790039062 2 599.754192 1197.49383 0.45052 0.0002702 0.14522 8.7097E-05 0.59574 0.0003573 599.754284693072 70.326 0.48021 73.538 73.372 73.852 3.2113 79 43 2 0 0 0 0.48846 1 17163 17163 1.8442 0 1 120420 43324 2029 27432 27444 49744 49744 -0.09701537392288628 TDGESHDHDQ 10 Unmodified _TDGESHDHDQ_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS UPN47_class_I_Rep_2 3 570.7122802734375 2 570.713056 1139.41156 NaN NaN NaN NaN NaN NaN NaN 112.06 1 115.58 115.08 116.08 3.5226 0 0 0 0.53105 1 27295 27295 0 0 1 43325 4588 27433 27445 49745 49745 -0.1525705947124152 TDHDLVTI 8 Unmodified _TDHDLVTI_ 0 0 0 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 457.23455810546875 2 457.234907 912.455261 -0.47881 -0.00021893 0.31505 0.00014405 -0.16376 -7.4878E-05 457.2349568755481 36.407 0.94969 39.818 39.492 40.442 3.4114 153 71 3 0 0 0 0.82752 2 6771 6771;6849 32.117 0 1 439550 + 43326 18464 27434 27446 49746;49747 49746 -0.004467982361234135 TDIEYRLKG 9 Unmodified _TDIEYRLKG_ 0 0 0 REV__ENSG00000187522|ENST00000378372|HSPA14 REV__ENSG00000187522|ENST00000378372|HSPA14 MSMS UPN47_class_I_Rep_1 2 547.7945556640625 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 29.686 1 33.444 32.944 33.944 3.7578 0 0 0 0.38916 1 4751 4751 3.2813 0 1 + 43327 20929 27435 27447 49748 49748 0.03372824126358864 TDILKGHFLA 10 Unmodified _TDILKGHFLA_ 0 0 0 REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 557.8165283203125 2 557.816399 1113.61824 0.41306 0.00023041 -0.89207 -0.00049761 -0.47901 -0.0002672 557.8162588020394 45.157 0.4308 48.915 48.638 49.069 3.7579 41 32 2 0 0 0 0.56354 1 8696 8696 1.3295 1.3295 1 149260 + 43328 22475 27436 27448 49749 49749 0.0659800488572273 TDISRIEFY 9 Unmodified _TDISRIEFY_ 0 0 0 REV__L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|136|1|anti-sense REV__L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|136|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.2875366210938 2 572.287671 1142.56079 0.43443 0.00024862 0.50878 0.00029117 0.94321 0.00053979 572.2876408312502 54.043 0.65664 57.557 57.196 57.852 3.5143 106 46 3 0 0 0 0.36392 1 11347 11347 10.074 0 1 381850 + 43329 28823 27437 27449 49750 49750 -0.004788821105194074 TDIYVPEGK 9 Unmodified _TDIYVPEGK_ 0 0 0 REV__MSTB1_dup4092|chr17:67879546-67879981:-|1.715023226156017|0.019994064832214|6.42|151.0|27|2|anti-sense REV__MSTB1_dup4092|chr17:67879546-67879981:-|1.715023226156017|0.019994064832214|6.42|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 511.26318359375 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 63.782 1 67.291 66.791 67.791 3.5085 0 0 0 0.39518 1 14287 14287 1.8442 0.36234 1 + 43330 31907 27438 27450 49751 49751 0.003340439694397901 TDKDLKNII 9 Unmodified _TDKDLKNII_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|98|2|sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|98|2|sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|98|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.3121337890625 2 530.305864 1058.59717 0.39294 0.00020838 -0.90573 -0.00048032 -0.5128 -0.00027194 530.305024612925 29.182 0.5306 32.732 32.49 33.021 3.5499 89 55 2 0 0 0 0.44742 1 4058 4058 5.2969 0 1 138040 43331 9733 27439 27451 49752 49752 0.07021994786191499 TDKDLNQYI 9 Unmodified _TDKDLNQYI_ 0 0 0 REV__L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|72|3|sense REV__L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|72|3|sense MSMS UPN47_class_I_Rep_1 2 555.2762451171875 2 555.277303 1108.54005 NaN NaN NaN NaN NaN NaN NaN 27.035 1 30.801 30.301 31.301 3.7662 0 0 0 0.39428 1 3961 3961 2.0598 0 1 + 43332 24009 27440 27452 49753 49753 -0.009874724901919762 TDKDPKLTI 9 Unmodified _TDKDPKLTI_ 0 0 0 REV__L1MEd_dup15131|chr11:65195426-65196352:-|1.4435116244526685|0.0721670530294822|4.32|151.0|18|2|sense REV__L1MEd_dup15131|chr11:65195426-65196352:-|1.4435116244526685|0.0721670530294822|4.32|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.7918090820312 2 515.792589 1029.57063 -0.10457 -5.3938E-05 0.52625 0.00027143 0.42167 0.0002175 515.7925153996661 46.051 0.52911 49.405 49.122 49.651 3.3534 50 35 2 0 0 0 0.44742 1 9762 9762 5.2969 0 1 51091 + 43333 28532 27441 27453 49754 49754 0.057023058948516336 TDKDPKLTI 9 Unmodified _TDKDPKLTI_ 0 0 0 REV__L1MEd_dup15131|chr11:65195426-65196352:-|1.4435116244526685|0.0721670530294822|4.32|151.0|18|2|sense REV__L1MEd_dup15131|chr11:65195426-65196352:-|1.4435116244526685|0.0721670530294822|4.32|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 515.7921752929688 2 515.792589 1029.57063 0.11524 5.9441E-05 0.1385 7.1439E-05 0.25375 0.00013088 515.7923234782736 46.103 0.41465 49.347 49.089 49.503 3.2441 38 23 2 0 0 0 0.44742 1 9793 9793 5.2969 0 1 62063 + 43334 28532 27441 27453 49755 49755 0.057023058948516336 TDKDQYRH 8 Unmodified _TDKDQYRH_ 0 0 0 REV__L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|19|2|sense REV__L1MA5_dup653|chr2:207585016-207586122:+|3.4718673371471898|0.2374975392098899|3.87|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.7511596679688 2 531.751787 1061.48902 -0.15539 -8.2629E-05 -0.19863 -0.00010562 -0.35402 -0.00018825 531.7515955864985 13.106 0.60633 16.563 16.455 17.061 3.457 164 66 4 0 0 0 0.82752 1 361 361 0.69038 0 1 1041400 + 43335 25404 27442 27454 49756 49756 -0.0392637674440266 TDKELKQI 8 Unmodified _TDKELKQI_ 0 0 0 L1PREC2_dup2223|chr5:21489763-21490080:-|1.6710548372383844|0.0562219434300505|4.89|151.0|10|3|sense;L1PREC2_dup2271|chr5:34184114-34184431:+|3.350424363461251|0.0942703223582655|5.15|151.0|10|3|sense;L1PREC2_dup2383|chr5:69908816-69909134:-|1.306957287709086|0.0306921073983351|5.41|149.0|9|3|sense L1PREC2_dup2223|chr5:21489763-21490080:-|1.6710548372383844|0.0562219434300505|4.89|151.0|10|3|sense L1PREC2_dup2223|chr5:21489763-21490080:-|1.6710548372383844|0.0562219434300505|4.89|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.7793884277344 2 487.779482 973.544411 -0.077814 -3.7956E-05 0.06337 3.0911E-05 -0.014444 -7.0457E-06 487.77945755809327 44.615 0.61749 47.859 47.549 48.166 3.2441 52 36 2 0 0 0 0.82752 1 9381 9381 14.838 0 1 96580 43336 15432 27443 27455 49757 49757 0.056580367233777906 TDKTKNNPY 9 Unmodified _TDKTKNNPY_ 0 0 0 REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|61|3|sense REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|61|3|sense MSMS UPN47_class_I_Rep_1 2 540.7693481445312 2 540.769645 1079.52474 NaN NaN NaN NaN NaN NaN NaN 53.397 1 56.925 56.425 57.425 3.5278 0 0 0 0.18866 1 11960 11960 17.113 0.1706 1 + 43337 27800 27444 27456 49758 49758 -0.011843392873743142 TDKTKNNPY 9 Unmodified _TDKTKNNPY_ 0 0 0 REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|61|3|sense REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|61|3|sense MSMS UPN47_class_I_Rep_2 3 540.7689208984375 2 540.769645 1079.52474 NaN NaN NaN NaN NaN NaN NaN 53.708 1 57.034 56.534 57.534 3.3266 0 0 0 0.27207 1 12083 12083 12.241 0.74595 1 + 43338 27800 27444 27456 49759 49759 -0.011843392873743142 TDKYCFLNY 9 Unmodified _TDKYCFLNY_ 0 0 0 REV__L1PA13_dup511|chr1:246769928-246770586:-|1.7351999699931464|0.1954718453855088|3.15|149.0|16|3|sense REV__L1PA13_dup511|chr1:246769928-246770586:-|1.7351999699931464|0.1954718453855088|3.15|149.0|16|3|sense MSMS UPN47_class_I_Rep_2 3 583.7813720703125 2 583.762975 1165.5114 NaN NaN NaN NaN NaN NaN NaN 46.012 1 49.365 48.865 49.865 3.3534 0 0 0 0.39598 1 9750 9750 1.6526 0.17072 1 + 43339 29105 27445 27457 49760 49760 -0.06473913390982489 TDLCYRQRLE 10 Unmodified _TDLCYRQRLE_ 0 0 0 REV__ENSG00000176978|ENST00000371579|DPP7 REV__ENSG00000176978|ENST00000371579|DPP7 MSMS UPN48_class_I_Rep_3 7 432.8852233886719 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 110.6 1 114.27 113.77 114.77 3.6654 0 0 0 0.53105 1 26245 26245 0.69767 0 1 + 43340 20605 27446 27458 49761 49761 -0.006769608022977991 TDLDVEGPW 9 Unmodified _TDLDVEGPW_ 0 0 0 ENSG00000275954|ENST00000620210|TBC1D3F;nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G ENSG00000275954|ENST00000620210|TBC1D3F ENSG00000275954|ENST00000620210|TBC1D3F MSMS UPN47_class_I_Rep_3 4 516.2388305664062 2 516.237647 1030.46074 NaN NaN NaN NaN NaN NaN NaN 36.295 1 39.55 39.05 40.05 3.2547 0 0 0 0.38639 1 6826 6826 3.9444 0 1 43341 5778 27447 27459 49762 49762 -0.053271194443368586 TDLFKVSNK 9 Unmodified _TDLFKVSNK_ 0 0 0 REV__L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|55|2|sense REV__L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|55|2|sense MSMS UPN48_class_I_Rep_2 6 526.2930297851562 2 526.292756 1050.57096 NaN NaN NaN NaN NaN NaN NaN 27.789 1 31.42 30.92 31.92 3.6311 0 0 0 0.39598 1 3733 3733 1.6526 0 1 + 43342 30652 27448 27460 49763 49763 0.04769725614710296 TDLFTNQFY 9 Unmodified _TDLFTNQFY_ 0 0 0 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS UPN47_class_I_Rep_1 2 574.7670288085938 2 574.766571 1147.51859 0.32605 0.0001874 -0.022341 -1.2841E-05 0.30371 0.00017456 574.7665228032793 67.671 0.59074 71.032 70.744 71.335 3.3611 92 44 3 0 0 0 0.11683 1 16356 16356 30.637 0 1 228720 + 43343 19283 27449 27461 49764 49764 -0.049268575188989416 TDLFTNQFY 9 Unmodified _TDLFTNQFY_ 0 0 0 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS UPN47_class_I_Rep_2 3 574.7670288085938 2 574.766571 1147.51859 0.38748 0.00022271 -0.17546 -0.00010085 0.21202 0.00012186 574.7663132268257 67.849 0.68037 71.113 70.832 71.512 3.2636 111 58 3 0 0 0 0.082592 3 16341 16308;16341;16493 37.974 0 1 207880 + 43344 19283 27449 27461 49765;49766;49767 49766 -0.049268575188989416 TDLFTNQFY 9 Unmodified _TDLFTNQFY_ 0 0 0 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-MSMS UPN47_class_I_Rep_3 4 574.7667236328125 2 574.766571 1147.51859 0.44119 0.00025358 -0.11674 -6.7099E-05 0.32445 0.00018648 574.7664442400406 67.844 0.67651 71.036 70.709 71.385 3.1914 89 50 2 0 0 0 0.082592 2 16500 16385;16500 37.974 0 1 208140 + 43345 19283 27449 27461 49768;49769 49769 -0.049268575188989416 TDLHANVYQ 9 Unmodified _TDLHANVYQ_ 0 0 0 REV__ENST00000591808.5_1_18:56532156-56532252:+|nuORF REV__ENST00000591808.5_1_18:56532156-56532252:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.75634765625 2 530.756538 1059.49852 0.028753 1.5261E-05 0.68409 0.00036309 0.71285 0.00037835 530.75699111343 43.883 1.1638 47.578 46.856 48.02 3.6951 127 68 3 0 0 0 0.31407 1 9058 9058 13.042 0 1 151930 + 43346 23173 27450 27462 49770 49770 -0.028846084588622034 TDLNVKSK 8 Unmodified _TDLNVKSK_ 0 0 0 L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|83|3|sense;L1PA15_dup644|chr2:39316900-39318409:+|1.1446474181394155|0.2639994477917565|2.12|150.0|21|2|sense L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|83|3|sense L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|83|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.7565612792969 2 452.758549 903.502546 -0.52781 -0.00023897 -2.7049 -0.0012247 -3.2327 -0.0014636 452.75718500454684 20.201 0.17359 23.597 23.535 23.709 3.3963 18 16 2 0 0 0 0.82752 1 2057 2057 2.3027 0 1 16847 43347 11219 27451 27463 49771 49771 0.046934810348602696 TDLQGLRLY 9 Unmodified _TDLQGLRLY_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS UPN47_class_I_Rep_1 2 540.2899169921875 2 539.798206 1077.58186 0.4176 0.00022542 0.41967 0.00022654 0.83728 0.00045196 539.7980746627876 58.882 0.88372 62.299 61.93 62.814 3.4171 107 60 3 0 0 0 0.25207 1 13567 13567 16.942 0 1 377690 43348 5657 27452 27464 49772 49772 0.0461712798901317 TDLRAKRA 8 Unmodified _TDLRAKRA_ 0 0 0 L1MC4_dup20667|chr15:101203460-101204150:+|1.8152526970923728|0.1162970795159356|3.96|150.0|22|2|sense L1MC4_dup20667|chr15:101203460-101204150:+|1.8152526970923728|0.1162970795159356|3.96|150.0|22|2|sense L1MC4_dup20667|chr15:101203460-101204150:+|1.8152526970923728|0.1162970795159356|3.96|150.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 465.7774963378906 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 72.999 1 76.473 75.973 76.973 3.4745 0 0 0 0.40738 1 17173 17173 0.79363 0 1 43349 11451 27453 27465 49773 49773 0.07307411740168845 TDLRLKLFY 9 Unmodified _TDLRLKLFY_ 0 0 0 REV__nc|ENSG00000152822|Q13255-2|GRM1 REV__nc|ENSG00000152822|Q13255-2|GRM1 MSMS UPN47_class_I_Rep_2 3 584.8388671875 2 584.839874 1167.66519 NaN NaN NaN NaN NaN NaN NaN 68.98 1 72.25 71.75 72.75 3.2696 0 0 0 0.24828 1 16725 16725 13.508 4.9146 1 + 43350 19695 27454 27466 49774 49774 0.08806864436837714 TDLVSSFAFL 10 Unmodified _TDLVSSFAFL_ 0 0 0 REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF MSMS UPN48_class_I_Rep_1 5 550.287841796875 2 550.28714 1098.55973 NaN NaN NaN NaN NaN NaN NaN 65.572 1 69.024 68.524 69.524 3.4516 0 0 0 0.53105 1 14928 14928 6.7232 0.51738 1 + 43351 17937 27455 27467 49775 49775 0.01438903520556778 TDLVSSFAFL 10 Unmodified _TDLVSSFAFL_ 0 0 0 REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 550.2866821289062 2 550.28714 1098.55973 0.44914 0.00024715 -0.23661 -0.00013021 0.21252 0.00011695 550.2869481684688 65.187 0.30009 68.695 68.49 68.79 3.5077 30 19 2 0 0 0 0.54078 1 14702 14702 6.7232 0.51738 1 84704 + 43352 17937 27455 27467 49776 49776 0.01438903520556778 TDLVSSFAFL 10 Unmodified _TDLVSSFAFL_ 0 0 0 REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 550.28714 1098.55973 0.5766 0.0003173 -0.12691 -6.9836E-05 0.44969 0.00024746 550.2871261019344 65.337 0.33552 68.791 68.64 68.975 3.4541 0.048256 8.5687E-05 NaN 6.7232 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 79786 + 43353 17937 27455 27467 0.01438903520556778 TDNALDQES 9 Unmodified _TDNALDQES_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|2|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|2|intron MSMS UPN47_class_I_Rep_3 4 496.7122802734375 2 496.711993 991.409433 NaN NaN NaN NaN NaN NaN NaN 45.324 1 48.568 48.068 49.068 3.2441 0 0 0 0.3967 1 9592 9592 1.4819 0.68827 1 + 43354 19041 27456 27468 49777 49777 -0.08661488209031631 TDNRYVLLL 9 Unmodified _TDNRYVLLL_ 0 0 0 REV__L1M2_dup3170|chr5:179986870-179987159:-|1.6703801510102263|0.0367274850008808|5.51|151.0|21|3|anti-sense REV__L1M2_dup3170|chr5:179986870-179987159:-|1.6703801510102263|0.0367274850008808|5.51|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.8141479492188 2 553.813856 1105.61316 -0.050761 -2.8112E-05 0.39396 0.00021818 0.34319 0.00019007 553.8137395186986 39.036 0.78481 42.274 41.939 42.724 3.238 73 54 2 0 0 0 0.43153 1 7767 7767 6.2058 0 1 59363 + 43355 24192 27457 27469 49778 49778 0.06457701023100526 TDPGRWEFYL 10 Unmodified _TDPGRWEFYL_ 0 0 0 L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|392|3|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|392|3|anti-sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|392|3|anti-sense MSMS UPN47_class_I_Rep_1 2 642.3084106445312 2 642.306395 1282.59824 NaN NaN NaN NaN NaN NaN NaN 86.379 1 89.994 89.494 90.494 3.6153 0 0 0 0.53105 1 21579 21579 1.6526 0.17072 1 43356 14808 27458 27470 49779 49779 -0.031757908449208117 TDPSGKTNHY 10 Unmodified _TDPSGKTNHY_ 0 0 0 nc|ENSG00000117090|Q13291-3|SLAMF1 nc|ENSG00000117090|Q13291-3|SLAMF1 nc|ENSG00000117090|Q13291-3|SLAMF1 MULTI-MSMS UPN47_class_I_Rep_2 3 560.2567138671875 2 560.256902 1118.49925 0.045797 2.5658E-05 -0.58319 -0.00032674 -0.53739 -0.00030108 560.2565493230983 35.099 0.69218 38.524 38.177 38.869 3.4253 84 47 2 0 0 0 0.56078 2 6453 6360;6453 3.2813 0 1 162410 43357 16668 27459 27471 49780;49781 49781 -0.05525813809799729 TDPSGKTNHY 10 Unmodified _TDPSGKTNHY_ 0 0 0 nc|ENSG00000117090|Q13291-3|SLAMF1 nc|ENSG00000117090|Q13291-3|SLAMF1 nc|ENSG00000117090|Q13291-3|SLAMF1 MULTI-MSMS UPN47_class_I_Rep_3 4 560.2567138671875 2 560.256902 1118.49925 -0.10718 -6.005E-05 -0.56638 -0.00031732 -0.67356 -0.00037737 560.2566287561432 35.226 0.72981 38.49 38.162 38.892 3.2639 106 50 3 0 0 0 0.56078 1 6551 6551 3.2813 0 1 151090 43358 16668 27459 27471 49782 49782 -0.05525813809799729 TDPSGPILGLH 11 Unmodified _TDPSGPILGLH_ 0 0 0 REV__ENST00000482433.1_1_19:2216201-2220604:+|nuORF REV__ENST00000482433.1_1_19:2216201-2220604:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 554.296142578125 2 553.795663 1105.57677 0.39467 0.00021856 0.21446 0.00011877 0.60913 0.00033733 553.7959476226492 61.93 0.47576 65.096 64.997 65.472 3.1667 59 35 2 0 0 0 0.65271 1 14759 14759 2.9952 0 1 101190 + 43359 22574 27460 27472 49783 49783 0.028208241263882883 TDQEMSCEEH 10 Unmodified _TDQEMSCEEH_ 0 0 0 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant;ENSG00000112343|ENST00000357085|TRIM38 TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant TRIM38|p.G464Rfs*2|1|0.17|ENSG00000112343|chr6:25983672-25983673|-/C|frameshift_variant MSMS UPN48_class_I_Rep_2 6 604.7136840820312 2 604.713353 1207.41215 NaN NaN NaN NaN NaN NaN NaN 115.45 1 119.11 118.61 119.61 3.6616 0 0 0 0.53105 1 27631 27631 1.6526 0.17072 1 43360 2011 27461 27473 49784 49784 -0.18325724138048827 TDQPSDSEMM 10 Unmodified _TDQPSDSEMM_ 0 0 0 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 MSMS UPN47_class_I_Rep_2 3 570.7127075195312 2 570.712821 1139.41109 NaN NaN NaN NaN NaN NaN NaN 72.399 1 75.696 75.196 76.196 3.2971 0 0 0 0.53105 1 17745 17745 1.1933 0.39971 1 43361 5505 27462 27474 49785 49785 -0.1530393850694054 TDQQDRKFT 9 Unmodified _TDQQDRKFT_ 0 0 0 L1PA4_dup5729|chr8:6651673-6655456:+|1.1465391715107949|0.0553422568890637|4.37|151.0|25|2|sense;L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|66|2|sense L1PA4_dup5729|chr8:6651673-6655456:+|1.1465391715107949|0.0553422568890637|4.37|151.0|25|2|sense L1PA4_dup5729|chr8:6651673-6655456:+|1.1465391715107949|0.0553422568890637|4.37|151.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 569.780029296875 2 569.778002 1137.54145 NaN NaN NaN NaN NaN NaN NaN 22.973 1 26.418 25.918 26.918 3.4447 0 0 0 0.38784 1 2817 2817 3.5965 0.60125 1 43362 14341 27463 27475 49786 49786 -0.02181838401429559 TDQTVANFV 9 Unmodified _TDQTVANFV_ 0 0 0 REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1 REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1 MULTI-MSMS UPN47_class_I_Rep_3 4 497.745849609375 2 497.745639 993.476725 0.16645 8.2849E-05 -0.092431 -4.6007E-05 0.074017 3.6842E-05 497.74554563599713 61.242 0.55524 64.407 64.238 64.794 3.1651 77 44 2 0 0 0 0.33908 1 14406 14406 11.495 2.1116 1 182070 + 43363 21230 27464 27476 49787 49787 -0.02027413207429163 TDRFAVVF 8 Unmodified _TDRFAVVF_ 0 0 0 ENST00000449504.5_3_2:242206301-242208377:-|nuORF;ENST00000462130.1_1_2:242206301-242208783:-|nuORF;ENST00000391976.6_1_2:242206301-242254533:-|nuORF;ENST00000425989.5_3_2:242206301-242256314:-|nuORF;ENST00000444092.5_3_2:242206301-242211378:-|nuORF;ENST00000428482.5_2_2:242206301-242208418:-|nuORF ENST00000449504.5_3_2:242206301-242208377:-|nuORF ENST00000449504.5_3_2:242206301-242208377:-|nuORF MSMS UPN48_class_I_Rep_1 5 477.75482177734375 2 477.75581 953.497067 NaN NaN NaN NaN NaN NaN NaN 116.36 1 119.98 119.48 120.48 3.6254 0 0 0 0.40643 1 28331 28331 2.0598 0.21551 1 43364 6517 27465 27477 49788 49788 0.018458022430536403 TDRKFVIS 8 Unmodified _TDRKFVIS_ 0 0 0 REV__ENSG00000169306|ENST00000378993|IL1RAPL1 REV__ENSG00000169306|ENST00000378993|IL1RAPL1 MSMS UPN47_class_I_Rep_1 2 483.27520751953125 2 483.274367 964.53418 NaN NaN NaN NaN NaN NaN NaN 26.123 1 29.886 29.386 30.386 3.7624 0 0 0 0.40625 1 3690 3690 2.3027 0 1 + 43365 20308 27466 27478 49789 49789 0.050494737888243435 TDSKLVRS 8 Unmodified _TDSKLVRS_ 0 0 0 REV__L1ME1_dup19050|chr10:11182956-11185174:-|21.051783670392243|0.0638077318908123|8.37|151.0|101|1|anti-sense REV__L1ME1_dup19050|chr10:11182956-11185174:-|21.051783670392243|0.0638077318908123|8.37|151.0|101|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 453.2557373046875 2 453.256174 904.497795 -0.11728 -5.3157E-05 -0.26051 -0.00011808 -0.37778 -0.00017123 453.25596266505084 27.66 1.1365 27.66 27.331 28.468 0 187 86 3 0 0 0 0.82752 1 4282 4282 15.248 0 1 692780 + 43366 27645 27467 27479 49790 49790 0.0417259689210141 TDSKLVRS 8 Unmodified _TDSKLVRS_ 0 0 0 REV__L1ME1_dup19050|chr10:11182956-11185174:-|21.051783670392243|0.0638077318908123|8.37|151.0|101|1|anti-sense REV__L1ME1_dup19050|chr10:11182956-11185174:-|21.051783670392243|0.0638077318908123|8.37|151.0|101|1|anti-sense MSMS UPN48_class_I_Rep_3 7 453.25604248046875 2 453.256174 904.497795 NaN NaN NaN NaN NaN NaN NaN 24.006 1 27.775 27.275 28.275 3.769 0 0 0 0.40527 1 2718 2718 3.5965 0 1 + 43367 27645 27467 27479 49791 49791 0.0417259689210141 TDTATYDHQ 9 Unmodified _TDTATYDHQ_ 0 0 0 REV__nc|ENSG00000136717|O00499-3|BIN1 REV__nc|ENSG00000136717|O00499-3|BIN1 MULTI-MSMS UPN47_class_I_Rep_2 3 526.219970703125 2 526.219985 1050.42542 -0.27973 -0.0001472 -0.16214 -8.5323E-05 -0.44187 -0.00023252 526.2198437184661 17.008 0.48816 20.395 20.261 20.749 3.387 72 53 2 0 0 0 0.49187 1 1244 1244 1.4819 0.28856 1 27740 + 43368 19197 27468 27480 49792 49792 -0.09777781972138655 TDVAKNVQAL 10 Unmodified _TDVAKNVQAL_ 0 0 0 REV__ENSG00000111331|ENST00000228928|OAS3 REV__ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS UPN47_class_I_Rep_1 2 529.7957763671875 2 529.795663 1057.57677 0.13146 6.9647E-05 0.79055 0.00041883 0.92201 0.00048848 529.7961757825125 47.671 0.45294 51.366 51.257 51.709 3.6951 42 32 2 0 0 0 0.32646 1 10214 10214 26.268 2.2476 1 142410 + 43369 18453 27469 27481 49793 49793 0.05028824126384279 TDVFLTLVAD 10 Unmodified _TDVFLTLVAD_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MSMS UPN48_class_I_Rep_1 5 547.2728271484375 2 547.292422 1092.57029 NaN NaN NaN NaN NaN NaN NaN 38.392 1 41.897 41.397 42.397 3.5052 0 0 0 0.53105 1 6646 6646 3.2813 0 1 + 43370 20948 27470 27482 49794 49794 0.0277088617501704 TDVFVVGTER 10 Unmodified _TDVFVVGTER_ 0 0 0 nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-SECPEP UPN48_class_I_Rep_3 7 561.3251342773438 2 561.793121 1121.57169 0.34539 0.00019404 0.20074 0.00011278 0.54613 0.00030681 562.2947406067198 45.243 0.17451 48.88 48.783 48.958 3.6371 15 12 2 0 0 0 0.84575 1 8646 8646 4.5289 2.2261 1 46674 43371 5791;4681 27471 27483 49795 49795 0.015765202637794573 TDVLFLQKR 9 Unmodified _TDVLFLQKR_ 0 0 0 L1MEg1_dup760|chr15:65688953-65690056:-|2.5287165980034327|0.2104001333641601|3.59|151.0|50|1|anti-sense L1MEg1_dup760|chr15:65688953-65690056:-|2.5287165980034327|0.2104001333641601|3.59|151.0|50|1|anti-sense L1MEg1_dup760|chr15:65688953-65690056:-|2.5287165980034327|0.2104001333641601|3.59|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_1 2 560.3302001953125 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 46.811 1 50.506 50.006 51.006 3.6951 0 0 0 0.39518 1 9964 9964 1.8442 0 1 43372 13437 27472 27484 49796 49796 0.09021693777026485 TDVLFLQKR 9 Unmodified _TDVLFLQKR_ 0 0 0 L1MEg1_dup760|chr15:65688953-65690056:-|2.5287165980034327|0.2104001333641601|3.59|151.0|50|1|anti-sense L1MEg1_dup760|chr15:65688953-65690056:-|2.5287165980034327|0.2104001333641601|3.59|151.0|50|1|anti-sense L1MEg1_dup760|chr15:65688953-65690056:-|2.5287165980034327|0.2104001333641601|3.59|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_2 3 560.3287963867188 2 560.329673 1118.64479 NaN NaN NaN NaN NaN NaN NaN 43.546 1 46.904 46.404 47.404 3.358 0 0 0 0.39518 1 8993 8993 1.8442 0 1 43373 13437 27472 27484 49797 49797 0.09021693777026485 TDVQQNIPM 9 Unmodified _TDVQQNIPM_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|49|3|sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.2529907226562 2 523.252774 1044.491 0.40384 0.00021131 0.076838 4.0206E-05 0.48068 0.00025152 523.2527220143363 90.52 0.70369 94.21 93.819 94.523 3.6899 150 93 2 0 0 0 0.42249 1 22587 22587 6.7232 0 1 266880 + 43374 30323 27473 27485 49798 49798 -0.029470840507883622 TDVQSVERF 9 Unmodified _TDVQSVERF_ 0 0 0 REV__ENSG00000069248|ENST00000261396|NUP133 REV__ENSG00000069248|ENST00000261396|NUP133 MULTI-MSMS UPN47_class_I_Rep_2 3 540.7697143554688 2 540.769645 1079.52474 0.0013258 7.1696E-07 0.21556 0.00011657 0.21688 0.00011728 540.7693307358268 41.356 0.27476 44.722 44.598 44.873 3.3655 41 22 2 0 0 0 0.37599 1 8343 8343 9.3831 0 1 76873 + 43375 17784 27474 27486 49799 49799 -0.011843392873743142 TDVQSVERF 9 Unmodified _TDVQSVERF_ 0 0 0 REV__ENSG00000069248|ENST00000261396|NUP133 REV__ENSG00000069248|ENST00000261396|NUP133 MULTI-MATCH UPN47_class_I_Rep_1 2 2 540.769645 1079.52474 0.0092552 5.0049E-06 -0.11914 -6.4426E-05 -0.10988 -5.9421E-05 540.7695230113302 41.02 0.50931 44.692 44.486 44.995 3.6719 -0.056249 -6.3007E-05 NaN 9.3831 55 42 2 NaN NaN NaN NaN 0 NaN NaN 0 88073 + 43376 17784 27474 27486 -0.011843392873743142 TDVQSVERF 9 Unmodified _TDVQSVERF_ 0 0 0 REV__ENSG00000069248|ENST00000261396|NUP133 REV__ENSG00000069248|ENST00000261396|NUP133 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 540.769645 1079.52474 0.023711 1.2822E-05 -0.33426 -0.00018076 -0.31055 -0.00016794 540.7698457025671 41.593 0.22071 44.83 44.759 44.98 3.2372 0.082201 -0.00029568 NaN 9.3831 23 20 2 NaN NaN NaN NaN 0 NaN NaN 0 75338 + 43377 17784 27474 27486 -0.011843392873743142 TDVRRHAQ 8 Unmodified _TDVRRHAQ_ 0 0 0 AluSc_dup9838|chr5:32172414-32172722:+|1.1217785890225946|0.0730001825106369|3.94|151.0|19|3|anti-sense AluSc_dup9838|chr5:32172414-32172722:+|1.1217785890225946|0.0730001825106369|3.94|151.0|19|3|anti-sense AluSc_dup9838|chr5:32172414-32172722:+|1.1217785890225946|0.0730001825106369|3.94|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_2 3 491.7633972167969 2 491.762489 981.510425 NaN NaN NaN NaN NaN NaN NaN 23.435 1 26.88 26.38 27.38 3.4447 0 0 0 0.40643 1 2950 2950 2.0598 0.40713 1 43378 206 27475 27487 49800 49800 0.018930530749912577 TEAEIDIRL 9 Unmodified _TEAEIDIRL_ 0 0 0 ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2 ENST00000546751.1_1_12:62974148-62979324:+|nuORF ENST00000546751.1_1_12:62974148-62979324:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 529.7507934570312 2 530.287671 1058.56079 0.54117 0.00028698 -0.7091 -0.00037603 -0.16793 -8.9049E-05 530.2872546368116 55.787 0.36824 59.343 59.193 59.561 3.5559 27 25 2 0 0 0 0.11446 1 11924 11924 14.405 2.1647 1 89652 43379 972 27476 27488 49801 49801 0.03385117889456524 TEAEIDIRL 9 Unmodified _TEAEIDIRL_ 0 0 0 ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2 ENST00000546751.1_1_12:62974148-62979324:+|nuORF ENST00000546751.1_1_12:62974148-62979324:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 530.287671 1058.56079 0.38669 0.00020506 0.041573 2.2046E-05 0.42827 0.0002271 530.2878025705954 56.035 0.076168 59.59 59.524 59.6 3.5554 0.12379 0.00057196 NaN 18.373 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 35590 43380 972 27476 27488 0.03385117889456524 TEAERHLVY 9 Unmodified _TEAERHLVY_ 0 0 0 ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6 ENST00000427443.5_1_16:58550827-58552930:+|nuORF ENST00000427443.5_1_16:58550827-58552930:+|nuORF MSMS UPN46_class_I_Rep_3 1 559.2835083007812 2 559.285463 1116.55637 NaN NaN NaN NaN NaN NaN NaN 19.384 1 19.384 18.884 19.884 0 0 0 0 0.3967 1 1837 1837 1.4819 0.68827 1 43381 1640 27477 27489 49802 49802 0.002756534665650179 TEAPGEYFF 9 Unmodified _TEAPGEYFF_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000481274.1_1_3:49062288-49062724:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MSMS UPN47_class_I_Rep_1 2 530.7354125976562 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 69.695 1 73.063 72.563 73.563 3.3678 0 0 0 0.38478 1 16901 16901 4.3292 1.0479 1 43382 1785 27478 27490 49803 49803 -0.07242217955990782 TEAPGEYFF 9 Unmodified _TEAPGEYFF_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000481274.1_1_3:49062288-49062724:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MSMS UPN47_class_I_Rep_2 3 530.7344970703125 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 69.813 1 73.089 72.589 73.589 3.2761 0 0 0 0.29868 1 16974 16974 10.824 5.0921 1 43383 1785 27478 27490 49804 49804 -0.07242217955990782 TEAPGEYFF 9 Unmodified _TEAPGEYFF_ 0 0 0 ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000481274.1_1_3:49062288-49062724:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF;ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;ENSG00000178035|ENST00000326739|IMPDH2;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1 ENST00000466147.5_1_3:49062090-49062580:-|nuORF ENST00000466147.5_1_3:49062090-49062580:-|nuORF MSMS UPN47_class_I_Rep_3 4 530.734619140625 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 69.816 1 73.021 72.521 73.521 3.2044 0 0 0 0.29868 1 17045 17045 10.824 5.0921 1 43384 1785 27478 27490 49805 49805 -0.07242217955990782 TEARTKSTQ 9 Unmodified _TEARTKSTQ_ 0 0 0 HERVL40-int_dup299|chr4:151113698-151114527:+|3.569042172806107|0.0864107207712899|5.37|151.0|33|1|anti-sense HERVL40-int_dup299|chr4:151113698-151114527:+|3.569042172806107|0.0864107207712899|5.37|151.0|33|1|anti-sense HERVL40-int_dup299|chr4:151113698-151114527:+|3.569042172806107|0.0864107207712899|5.37|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.77972412109375 2 511.26727 1020.51999 NaN NaN NaN NaN NaN NaN NaN 30.762 1 34.304 33.804 34.804 3.542 0 0 0 0.39598 1 4461 4461 1.6526 0.17072 1 43385 8394 27479 27491 49806 49806 0.01054776569878868 TECFDFDDCN 10 Unmodified _TECFDFDDCN_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS UPN47_class_I_Rep_1 2 604.69677734375 2 604.697171 1207.37979 NaN NaN NaN NaN NaN NaN NaN 113.91 1 117.49 116.99 117.99 3.572 0 0 0 0.53105 1 28131 28131 1.6526 1.0511 1 + 43386 18906 27480 27492 49807 49807 -0.21560511541019878 TECWGKKKH 9 Unmodified _TECWGKKKH_ 0 0 0 L1MB2_dup6044|chr12:66163785-66164194:+|1.7316128059277862|0.2273057774145178|2.93|151.0|10|2|sense L1MB2_dup6044|chr12:66163785-66164194:+|1.7316128059277862|0.2273057774145178|2.93|151.0|10|2|sense L1MB2_dup6044|chr12:66163785-66164194:+|1.7316128059277862|0.2273057774145178|2.93|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 558.7842407226562 2 558.784576 1115.5546 NaN NaN NaN NaN NaN NaN NaN 20.953 1 24.601 24.101 25.101 3.648 0 0 0 0.39428 1 1895 1895 2.0598 0.21551 1 43387 10268 27481 27493 49808 49808 0.0014432117698106595 TEDDEDEDDD 10 Unmodified _TEDDEDEDDD_ 0 0 0 ENSG00000152377|ENST00000394945|SPOCK1 ENSG00000152377|ENST00000394945|SPOCK1 ENSG00000152377|ENST00000394945|SPOCK1 MSMS UPN47_class_I_Rep_1 2 599.1795654296875 2 599.181117 1196.34768 NaN NaN NaN NaN NaN NaN NaN 115.83 1 119.43 118.93 119.93 3.5943 0 0 0 0.53105 1 28671 28671 1.6526 0 1 43388 3619 27482 27494 49809 49809 -0.24263929209496382 TEDFTLFTL 9 Unmodified _TEDFTLFTL_ 0 0 0 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 MULTI-MSMS UPN48_class_I_Rep_1 5 543.7714233398438 2 543.771322 1085.52809 0.41518 0.00022576 0.0037805 2.0557E-06 0.41896 0.00022782 543.7711845990665 90.677 0.19672 94.303 94.204 94.401 3.626 30 25 2 0 0 0 0.21527 1 21778 21778 19.257 4.4187 1 71424 43389 4208 27483 27495 49810 49810 -0.011250892333691809 TEDFTLFTL 9 Unmodified _TEDFTLFTL_ 0 0 0 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 543.771322 1085.52809 0.48363 0.00026298 -0.15204 -8.2676E-05 0.33159 0.00018031 544.2729664213252 90.379 0.12893 94.126 94.02 94.149 3.7471 -0.088677 -0.00010048 NaN 19.257 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 96611 43390 4208 27483 27495 -0.011250892333691809 TEDITRYFL 9 Unmodified _TEDITRYFL_ 0 0 0 nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2 nc|ENSG00000079819|O43491-3|EPB41L2 nc|ENSG00000079819|O43491-3|EPB41L2 MULTI-MSMS UPN48_class_I_Rep_1 5 579.2941284179688 2 579.295496 1156.57644 0.46754 0.00027084 -1.6553 -0.00095892 -1.1878 -0.00068807 579.2940187085055 67.79 0.92661 71.241 70.705 71.631 3.4517 121 70 3 0 0 0 0.16799 5 15587 15587;15623;15652;15666;15682 23.79 10.747 1 185530 43391 1194 27484 27496 49811;49812;49813;49814;49815 49811 0.004414044065242706 TEDITRYYL 9 Unmodified _TEDITRYYL_ 0 0 0 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 nc|ENSG00000159023|P11171-5|EPB41 MSMS UPN48_class_I_Rep_2 6 587.2921142578125 2 587.292953 1172.57135 NaN NaN NaN NaN NaN NaN NaN 54.63 1 58.212 57.712 58.712 3.5817 0 0 0 0.23173 1 11566 11566 14.405 6.2499 1 43392 3818;3819;1311 27485 27497 49816 49816 -0.008028994560845604 TEDITRYYL 9 Unmodified _TEDITRYYL_ 0 0 0 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000159023.22,EPB41,chr1,+,I20.1,29060485,29064956|60|13.32|1|intron;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 nc|ENSG00000159023|P11171-5|EPB41 MSMS UPN48_class_I_Rep_2 6 587.2919311523438 2 587.292953 1172.57135 NaN NaN NaN NaN NaN NaN NaN 54.638 1 58.22 57.72 58.72 3.5817 0 0 0 0.081356 1 11568 11568 28.495 16.854 1 43393 3818;3819;1311 27485 27497 49817 49817 -0.008028994560845604 TEDSKTIQGY 10 Unmodified _TEDSKTIQGY_ 0 0 0 ENST00000483671.1_1_3:16358337-16412408:-|nuORF;ENSG00000131378|ENST00000334133|RFTN1 ENST00000483671.1_1_3:16358337-16412408:-|nuORF ENST00000483671.1_1_3:16358337-16412408:-|nuORF MSMS UPN47_class_I_Rep_3 4 571.2735595703125 2 571.272218 1140.52988 NaN NaN NaN NaN NaN NaN NaN 50.967 1 54.184 53.684 54.684 3.2163 0 0 0 0.53105 1 11303 11303 5.2969 0 1 43394 2708 27486 27498 49818 49818 -0.03476080215409638 TEEDDFDDDD 10 Unmodified _TEEDDFDDDD_ 0 0 0 REV__ENST00000458237.1_1_X:32224171-32224564:+|nuORF REV__ENST00000458237.1_1_X:32224171-32224564:+|nuORF MSMS UPN48_class_I_Rep_2 6 405.7984313964844 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 112.36 1 116.02 115.52 116.52 3.6648 0 0 0 0.53105 1 26766 26766 0.13989 0 1 + 43395 22416 27487 27499 49819 49819 -0.22511034967214982 TEEDEDQY 8 Unmodified _TEEDEDQY_ 0 0 0 REV__ENST00000479393.2_1_6:138791728-138820433:-|nuORF REV__ENST00000479393.2_1_6:138791728-138820433:-|nuORF MSMS UPN48_class_I_Rep_3 7 514.2769775390625 2 514.688184 1027.36181 NaN NaN NaN NaN NaN NaN NaN 73.208 1 76.745 76.245 77.245 3.5373 0 0 0 0.40738 1 17117 17117 0.79363 0 1 + 43396 19144 27488 27500 49820 49820 -0.15077187199881337 TEEDVKFYL 9 Unmodified _TEEDVKFYL_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000474934.1_1_1:26877949-26879989:+|nuORF;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000177189|ENST00000379565|RPS6KA3 nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MSMS UPN48_class_I_Rep_1 5 572.2817993164062 2 572.282054 1142.54956 NaN NaN NaN NaN NaN NaN NaN 57.052 1 60.547 60.047 61.047 3.4942 0 0 0 0.3377 1 12329 12329 8.7454 2.5396 1 43397 4784;2228 27489 27501 49821 49821 -0.016017042046541974 TEEDVKFYL 9 Unmodified _TEEDVKFYL_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000474934.1_1_1:26877949-26879989:+|nuORF;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000177189|ENST00000379565|RPS6KA3 nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MSMS UPN48_class_I_Rep_3 7 572.2822265625 2 572.282054 1142.54956 NaN NaN NaN NaN NaN NaN NaN 56.789 1 60.332 59.832 60.832 3.5427 0 0 0 0.34878 1 12161 12161 8.1555 2.4237 1 43398 4784;2228 27489 27501 49822 49822 -0.016017042046541974 TEEEGRLCR 9 Unmodified _TEEEGRLCR_ 0 0 0 REV__nc|ENSG00000112851|Q96RT1-7|ERBIN REV__nc|ENSG00000112851|Q96RT1-7|ERBIN MSMS UPN47_class_I_Rep_3 4 546.7586669921875 2 546.758755 1091.50296 NaN NaN NaN NaN NaN NaN NaN 117.39 1 120.83 120.33 121.33 3.4425 0 0 0 0.4007 1 28920 28920 0.52476 0 1 + 43399 18491 27490 27502 49823 49823 -0.039134673075977844 TEEGDWISRPL 11 Unmodified _TEEGDWISRPL_ 0 0 0 REV__ENSG00000170577|ENST00000303077|SIX2 REV__ENSG00000170577|ENST00000303077|SIX2 MSMS UPN48_class_I_Rep_3 7 434.7799987792969 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 80.75 1 84.414 83.914 84.914 3.6635 0 0 0 0.38417 1 19107 19107 1.2148 0 1 + 43400 20370 27491 27503 49824 49824 -0.013567270243811436 TEEIIQVAF 9 Unmodified _TEEIIQVAF_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MSMS UPN46_class_I_Rep_3 1 525.2803955078125 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 79.734 1 79.734 79.234 80.234 0 0 0 0 0.10941 1 18745 18745 22.736 1.8651 1 43401 1295 27492 27504 49825 49825 0.02174617003538515 TEEIIQVAF 9 Unmodified _TEEIIQVAF_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MSMS UPN46_class_I_Rep_3 1 525.2794799804688 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 79.959 1 79.959 79.459 80.459 0 0 0 0 0.27207 1 18812 18812 12.241 2.8932 1 43402 1295 27492 27504 49826 49826 0.02174617003538515 TEEILEKAF 9 Unmodified _TEEILEKAF_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF;nc|ENSG00000271793|O60506-5|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MSMS UPN46_class_I_Rep_3 1 540.2837524414062 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 57.706 1 57.706 57.206 58.206 0 0 0 0 0.035625 1 12660 12660 42.312 12.472 1 43403 2897 27493 27505 49827 49827 0.018505996579506245 TEEILEKAF 9 Unmodified _TEEILEKAF_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF;nc|ENSG00000271793|O60506-5|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MSMS UPN46_class_I_Rep_3 1 540.283935546875 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 57.878 1 57.878 57.378 58.378 0 0 0 0 0.3377 1 12708 12708 8.7454 0.83525 1 43404 2897 27493 27505 49828 49828 0.018505996579506245 TEEILEKAF 9 Unmodified _TEEILEKAF_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF;nc|ENSG00000271793|O60506-5|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MSMS UPN47_class_I_Rep_1 2 540.2844848632812 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 52.16 1 55.719 55.219 56.219 3.5585 0 0 0 0.026555 1 11587 11587 49.527 5.7549 1 43405 2897 27493 27505 49829 49829 0.018505996579506245 TEEILEKAF 9 Unmodified _TEEILEKAF_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF;nc|ENSG00000271793|O60506-5|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MSMS UPN47_class_I_Rep_1 2 540.2845458984375 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 52.269 1 55.827 55.327 56.327 3.5585 0 0 0 0.054165 1 11618 11618 35.612 12.954 1 43406 2897 27493 27505 49830 49830 0.018505996579506245 TEEILEKAF 9 Unmodified _TEEILEKAF_ 0 0 0 nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF;nc|ENSG00000271793|O60506-5|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP nc|ENSG00000271793|O60506-4|SYNCRIP MSMS UPN47_class_I_Rep_3 4 540.2839965820312 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 52.618 1 55.824 55.324 56.324 3.2055 0 0 0 0.00073399 1 11806 11806 63.227 19.455 1 43407 2897 27493 27505 49831 49831 0.018505996579506245 TEETLKESF 9 Unmodified _TEETLKESF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MULTI-MSMS UPN46_class_I_Rep_3 1 542.26416015625 2 542.263862 1082.51317 0.35945 0.00019491 0.020111 1.0905E-05 0.37956 0.00020582 542.2637796502896 41.337 0.75339 41.337 41.058 41.812 0 178 77 3 0 0 0 0.0064536 7 8109 8020;8036;8071;8109;8145;8178;8212 136.39 67.817 1 915910 43408 2105 27494 27506 49832;49833;49834;49835;49836;49837;49838 49835 -0.02478581101377131 TEETLKESF 9 Unmodified _TEETLKESF_ 0 0 0 ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF ENSG00000115053|ENST00000322723|NCL ENSG00000115053|ENST00000322723|NCL MSMS UPN46_class_I_Rep_3 1 542.3662719726562 2 542.263862 1082.51317 NaN NaN NaN NaN NaN NaN NaN 41.859 1 41.859 41.359 42.359 0 0 0 0 0.081356 1 8241 8241 28.495 9.2375 1 43409 2105 27494 27506 49839 49839 -0.02478581101377131 TEFFQKIN 8 Unmodified _TEFFQKIN_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0|SPATA31C1 MULTI-MSMS UPN47_class_I_Rep_3 4 513.7662353515625 2 513.766374 1025.5182 0.18748 9.6321E-05 0.1798 9.2374E-05 0.36728 0.0001887 513.7663550071871 59.56 0.8615 62.725 62.304 63.165 3.1651 144 60 3 0 0 0 0.82752 1 13972 13972 4.756 4.756 1 259850 + 43410 32111 27495 27507 49840 49840 0.0064576755189591495 TEFKFPQI 8 Unmodified _TEFKFPQI_ 0 0 0 ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A ENSG00000082701|ENST00000264235|GSK3B ENSG00000082701|ENST00000264235|GSK3B MULTI-MSMS UPN46_class_I_Rep_3 1 505.2698669433594 2 505.271293 1008.52803 0.26603 0.00013442 0.14037 7.0924E-05 0.4064 0.00020534 505.2714126235526 69.6 0.33053 69.6 69.435 69.765 0 40 33 2 0 0 0 0.82752 1 15945 15945 21.747 6.9084 1 122660 43411 1233 27496 27508 49841 49841 0.02410955557274974 TEFNGIRDY 9 Unmodified _TEFNGIRDY_ 0 0 0 ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL MSMS UPN46_class_I_Rep_3 1 557.7619018554688 2 557.76182 1113.50909 NaN NaN NaN NaN NaN NaN NaN 45.941 1 45.941 45.441 46.441 0 0 0 0 0.10427 1 9380 9380 23.79 10.282 1 43412 3401 27497 27509 49842 49842 -0.043126258044367205 TEFNGIRDY 9 Unmodified _TEFNGIRDY_ 0 0 0 ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL MULTI-MSMS UPN47_class_I_Rep_1 2 557.7621459960938 2 557.76182 1113.50909 0.016489 9.1972E-06 -0.28476 -0.00015883 -0.26827 -0.00014963 557.7616344307477 41.613 0.60497 45.292 44.986 45.591 3.6792 77 42 2 0 0 0 0.077454 5 8354 8303;8314;8354;8395;8433 39.213 18.798 1 123000 43413 3401 27497 27509 49843;49844;49845;49846;49847 49845 -0.043126258044367205 TEFNGIRDY 9 Unmodified _TEFNGIRDY_ 0 0 0 ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL MULTI-MSMS UPN47_class_I_Rep_2 3 557.7626342773438 2 557.76182 1113.50909 0.064846 3.6169E-05 -0.046278 -2.5812E-05 0.018568 1.0356E-05 557.7617703860883 41.86 0.72985 45.225 44.923 45.653 3.3655 71 54 2 0 0 0 0.14474 5 8520 8440;8482;8520;8566;8576 26.021 9.8716 1 119780 43414 3401 27497 27509 49848;49849;49850;49851;49852 49850 -0.043126258044367205 TEFNGIRDY 9 Unmodified _TEFNGIRDY_ 0 0 0 ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL ENSG00000145569|ENST00000274217|OTULINL MULTI-MSMS UPN47_class_I_Rep_3 4 557.7611694335938 2 557.76182 1113.50909 0.063506 3.5421E-05 -0.32351 -0.00018044 -0.26 -0.00014502 557.7616527844256 41.996 0.81911 45.236 44.957 45.776 3.2394 79 60 2 0 0 0 0.092386 5 8605 8526;8528;8565;8605;8654 35.612 15.198 1 98929 43415 3401 27497 27509 49853;49854;49855;49856;49857 49856 -0.043126258044367205 TEFPNFKY 8 Unmodified _TEFPNFKY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS UPN46_class_I_Rep_3 1 523.2526245117188 2 523.2531 1044.49165 0.25139 0.00013154 -1.1428 -0.000598 -0.89146 -0.00046646 523.2524052407551 59.675 0.38554 59.675 59.359 59.745 0 75 43 2 0 0 0 0.82752 1 13154 13154 29.082 16.55 1 748260 43416 2751 27498 27510 49858 49858 -0.02881921339417204 TEFPSKQVF 9 Unmodified _TEFPSKQVF_ 0 0 0 ENST00000535871.1_1_12:6958551-6959649:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;ENST00000536241.1_1_12:6958687-6959760:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3 ENST00000535871.1_1_12:6958551-6959649:-|nuORF ENST00000535871.1_1_12:6958551-6959649:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 541.7796630859375 2 541.779482 1081.54441 0.24776 0.00013423 0.028753 1.5578E-05 0.27651 0.00014981 541.7796066664628 46.83 0.61012 50.182 49.782 50.392 3.3515 59 45 2 0 0 0 0.33908 1 9923 9923 11.495 3.3392 1 81088 43417 1981 27499 27511 49859 49859 0.0069003672338112665 TEFPSKQVF 9 Unmodified _TEFPSKQVF_ 0 0 0 ENST00000535871.1_1_12:6958551-6959649:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;ENST00000536241.1_1_12:6958687-6959760:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3 ENST00000535871.1_1_12:6958551-6959649:-|nuORF ENST00000535871.1_1_12:6958551-6959649:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 541.779482 1081.54441 0.30031 0.0001627 0.33138 0.00017954 0.6317 0.00034224 541.7796373570355 46.932 0.56121 50.175 49.782 50.343 3.2439 -0.0031444 9.4308E-05 NaN 11.495 56 34 2 NaN NaN NaN NaN 0 NaN NaN 0 73143 43418 1981 27499 27511 0.0069003672338112665 TEFWAEIYT 9 Unmodified _TEFWAEIYT_ 0 0 0 L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|36|1|anti-sense L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|36|1|anti-sense L1M5_dup9405|chr3:33857489-33858321:+|1.2647481629096813|0.3567033335166235|1.83|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 580.2689208984375 2 580.268947 1158.52334 0.35375 0.00020527 1.0807 0.00062707 1.4344 0.00083234 580.268788280759 70.982 0.94491 74.357 73.963 74.908 3.3751 193 80 4 0 0 0 0.30034 2 17317 17199;17317 13.906 3.8321 1 811600 43419 9211 27500 27512 49860;49861 49861 -0.04957973376122027 TEGDLPLNY 9 Unmodified _TEGDLPLNY_ 0 0 0 nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A MSMS UPN48_class_I_Rep_3 7 511.246337890625 2 511.245472 1020.47639 NaN NaN NaN NaN NaN NaN NaN 32.99 1 36.679 36.179 37.179 3.6896 0 0 0 0.38478 1 5072 5072 4.3292 1.44 1 43420 5026 27501 27513 49862 49862 -0.03302832927272448 TEGEDSQGLG 10 Unmodified _TEGEDSQGLG_ 0 0 0 HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|165|1|anti-sense HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|165|1|anti-sense HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|165|1|anti-sense MSMS UPN46_class_I_Rep_3 1 496.7120361328125 2 496.711993 991.409433 NaN NaN NaN NaN NaN NaN NaN 18.522 1 18.522 18.022 19.022 0 0 0 0 0.53105 1 1632 1632 0 0 1 43421 8261 27502 27514 49863 49863 -0.08661488209008894 TEGEDSQGLG 10 Unmodified _TEGEDSQGLG_ 0 0 0 HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|165|1|anti-sense HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|165|1|anti-sense HERVK11-int_dup135|chr9:112392991-112399089:-|1.3032706227914264|0.3088821374393763|2.08|151.0|165|1|anti-sense MSMS UPN47_class_I_Rep_1 2 496.71160888671875 2 496.711993 991.409433 NaN NaN NaN NaN NaN NaN NaN 42.763 1 46.451 45.951 46.951 3.6875 0 0 0 0.53105 1 8726 8726 0 0 1 43422 8261 27502 27514 49864 49864 -0.08661488209008894 TEGINLPEL 9 Unmodified _TEGINLPEL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS UPN47_class_I_Rep_1 2 493.26312255859375 2 493.263665 984.512776 NaN NaN NaN NaN NaN NaN NaN 64.038 1 67.394 66.894 67.894 3.3557 0 0 0 0.38073 1 15191 15191 5.2969 0 1 43423 1052 27503 27515 49865 49865 0.01990043969431099 TEGINLPEL 9 Unmodified _TEGINLPEL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS UPN47_class_I_Rep_2 3 493.263427734375 2 493.263665 984.512776 NaN NaN NaN NaN NaN NaN NaN 64.515 1 67.771 67.271 68.271 3.2556 0 0 0 0.38916 1 15374 15374 3.2813 0 1 43424 1052 27503 27515 49866 49866 0.01990043969431099 TEGNFIQY 8 Unmodified _TEGNFIQY_ 0 0 0 Tigger4b_dup1663|chr11:2984908-2985240:-|1.055772523576923|0.035734009342322|4.88|151.0|17|1|anti-sense Tigger4b_dup1663|chr11:2984908-2985240:-|1.055772523576923|0.035734009342322|4.88|151.0|17|1|anti-sense Tigger4b_dup1663|chr11:2984908-2985240:-|1.055772523576923|0.035734009342322|4.88|151.0|17|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.2269287109375 2 486.227082 970.439611 0.024141 1.1738E-05 -0.068896 -3.3499E-05 -0.044755 -2.1761E-05 486.2270369453889 46.78 0.32689 50.023 49.891 50.218 3.2439 28 20 2 0 0 0 0.82752 1 10073 10073 7.2892 0 1 48443 43425 33438 27504 27516 49867 49867 -0.04679084753195184 TEGNFIQY 8 Unmodified _TEGNFIQY_ 0 0 0 Tigger4b_dup1663|chr11:2984908-2985240:-|1.055772523576923|0.035734009342322|4.88|151.0|17|1|anti-sense Tigger4b_dup1663|chr11:2984908-2985240:-|1.055772523576923|0.035734009342322|4.88|151.0|17|1|anti-sense Tigger4b_dup1663|chr11:2984908-2985240:-|1.055772523576923|0.035734009342322|4.88|151.0|17|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 486.2873840332031 2 486.227082 970.439611 0.024141 1.1738E-05 -0.068896 -3.3499E-05 -0.044755 -2.1761E-05 486.2270369453889 46.78 0.32689 50.023 49.891 50.218 3.2439 28 20 2 0 0 0 0.72333 1 10012 10012 1.6526 0 1 48443 43426 33438 27504 27516 49868 49868 -0.04679084753195184 TEGSHLRY 8 Unmodified _TEGSHLRY_ 0 0 0 L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|3|1|sense L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|3|1|sense L1MEf_dup2268|chr3:121822559-121824142:+|1.6760908622755728|0.0324675642404593|5.69|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 482.2388000488281 2 481.738148 961.461744 -0.20497 -9.8742E-05 -0.14424 -6.9487E-05 -0.34921 -0.00016823 481.7379859207233 23.803 0.57437 27.269 27.039 27.614 3.4655 74 46 2 0 0 0 0.72333 1 3152 3152 4.3292 0 1 70310 43427 13257 27505 27517 49869 49869 -0.020528602847662114 TEGWKPPV 8 Unmodified _TEGWKPPV_ 0 0 0 L1ME3C_dup2715|chr14:102323722-102324088:+|1.1608230167650069|0.3268357184878172|1.83|151.0|1|1|sense L1ME3C_dup2715|chr14:102323722-102324088:+|1.1608230167650069|0.3268357184878172|1.83|151.0|1|1|sense L1ME3C_dup2715|chr14:102323722-102324088:+|1.1608230167650069|0.3268357184878172|1.83|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 457.2423400878906 2 457.242535 912.470518 NaN NaN NaN NaN NaN NaN NaN 106.22 1 106.22 105.72 106.72 0 0 0 0 0.40746 1 25904 25904 0.69038 0 1 43428 12749 27506 27518 49870 49870 0.010781133517070884 TEHFLTAVA 9 Unmodified _TEHFLTAVA_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MSMS UPN47_class_I_Rep_2 3 494.7570495605469 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 26.327 1 29.822 29.322 30.322 3.4945 0 0 0 0.36505 1 3792 3792 7.2892 0 1 43429 2640 27507 27519 49871 49871 0.008294810348502324 TEHGVEVVL 9 Unmodified _TEHGVEVVL_ 0 0 0 nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MSMS UPN48_class_I_Rep_3 7 491.7633361816406 2 491.763832 981.513111 0.16213 7.973E-05 -0.36199 -0.00017801 -0.19986 -9.8285E-05 491.7635918057994 44.514 0.62819 48.151 47.84 48.469 3.6372 78 45 2 0 0 0 0.33654 1 8433 8433 11.64 0 1 202970 43430 1410 27508 27520 49872 49872 0.02161463689287757 TEHVQTSL 8 Unmodified _TEHVQTSL_ 0 0 0 MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|6|2|sense MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|6|2|sense MER2_dup3217|chr5:139594801-139595108:-|1.2494359479980073|0.0115975494958007|6.75|151.0|6|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 457.8274230957031 2 457.732532 913.45051 -0.083479 -3.8211E-05 -0.07265 -3.3254E-05 -0.15613 -7.1465E-05 457.73254204445 28.678 0.57358 28.678 28.481 29.054 0 49 42 2 0 0 0 0.72333 1 4442 4442 8.7454 2.0222 1 44951 43431 15824 27509 27521 49873 49873 -0.009676823788936417 TEHWLWVI 8 Unmodified _TEHWLWVI_ 0 0 0 HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|2|1|sense HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|2|1|sense HERVL-int_dup1058|chr7:26122901-26125284:+|2.525035636852595|0.2958294461239796|3.09|148.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 542.2822875976562 2 542.284734 1082.55492 NaN NaN NaN NaN NaN NaN NaN 28.641 1 32.272 31.772 32.772 3.6311 0 0 0 0.40738 1 3964 3964 0.79363 0 1 43432 8338 27510 27522 49874 49874 0.016940641684641378 TEIEGTQKL 9 Unmodified _TEIEGTQKL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS UPN47_class_I_Rep_1 2 509.7743225097656 2 509.774396 1017.53424 -0.21164 -0.00010789 0.1942 9.9E-05 -0.017438 -8.8894E-06 509.77442577462716 30.316 1.0746 34.061 33.765 34.839 3.7449 203 83 4 0 0 0 0.0064536 4 4911 4873;4911;4950;4989 136.39 67.817 1 775720 43433 2342 27511 27523 49875;49876;49877;49878 49876 0.026174289981327092 TEIEGTQKL 9 Unmodified _TEIEGTQKL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS UPN47_class_I_Rep_2 3 509.77423095703125 2 509.774396 1017.53424 -0.25905 -0.00013206 0.24289 0.00012382 -0.016162 -8.2389E-06 509.7744520295641 30.472 1.0757 33.954 33.616 34.692 3.4821 226 85 4 0 0 0 0.0057802 4 4993 4954;4993;5033;5074 145.13 70.201 1 797070 43434 2342 27511 27523 49879;49880;49881;49882 49880 0.026174289981327092 TEIEGTQKL 9 Unmodified _TEIEGTQKL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.774396 1017.53424 -0.35538 -0.00018116 0.34919 0.00017801 -0.0061937 -3.1574E-06 509.7745161414031 30.657 1.2485 33.969 33.609 34.858 3.3116 -0.025915 8.3747E-05 NaN 145.13 233 101 4 NaN NaN NaN NaN 0 NaN NaN 0 817660 43435 2342 27511 27523 0.026174289981327092 TEIKVGVAY 9 Unmodified _TEIKVGVAY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS UPN46_class_I_Rep_3 1 490.2764892578125 2 490.276575 978.538597 0.24482 0.00012003 -0.19922 -9.7671E-05 0.0456 2.2357E-05 490.2764127695201 49.122 0.64936 49.122 48.781 49.431 0 103 61 2 0 0 0 0.052902 3 10289 10249;10289;10324 47.749 21.326 1 611300 43436 847 27512 27524 49883;49884;49885 49884 0.04846938211710494 TEIQIYNEI 9 Unmodified _TEIQIYNEI_ 0 0 0 L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|21|2|sense L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|21|2|sense L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 561.7881469726562 2 561.787504 1121.56045 0.37192 0.00020894 0.42783 0.00024035 0.79975 0.00044929 561.7878261000398 64.522 0.50188 67.878 67.61 68.112 3.3557 81 53 2 0 0 0 0.10568 1 15291 15291 32.786 6.5175 1 277540 43437 10863 27513 27525 49886 49886 0.0045369816962193 TEIQIYNEI 9 Unmodified _TEIQIYNEI_ 0 0 0 L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|21|2|sense L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|21|2|sense L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|21|2|sense MSMS UPN47_class_I_Rep_2 3 561.787841796875 2 561.787504 1121.56045 NaN NaN NaN NaN NaN NaN NaN 64.617 1 67.872 67.372 68.372 3.2556 0 0 0 0.085573 1 15406 15406 27.629 7.2143 1 43438 10863 27513 27525 49887 49887 0.0045369816962193 TEIRKCLY 8 Unmodified _TEIRKCLY_ 0 0 0 REV__L1MB1_dup4124|chr11:31737498-31738114:+|1.1888315656555069|0.0227974021802118|5.7|151.0|21|3|sense REV__L1MB1_dup4124|chr11:31737498-31738114:+|1.1888315656555069|0.0227974021802118|5.7|151.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 513.27587890625 2 513.276052 1024.53755 NaN NaN NaN NaN NaN NaN NaN 37.925 1 41.591 41.091 42.091 3.6652 0 0 0 0.40604 1 7253 7253 2.5775 0 1 + 43439 25668 27514 27526 49888 49888 0.02626400571148224 TEITDDLHFY 10 Unmodified _TEITDDLHFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS UPN47_class_I_Rep_1 2 627.2881469726562 2 627.287868 1252.56118 0.43097 0.00027034 -0.13173 -8.2636E-05 0.29923 0.00018771 627.2876470794173 63.694 0.63667 67.049 66.675 67.312 3.3557 161 55 4 0 0 0 0.00063407 5 15055 15013;15055;15090;15127;15165 103.35 82.356 1 411930 43440 5352 27515 27527 49889;49890;49891;49892;49893 49890 -0.05499507181343688 TEITDDLHFY 10 Unmodified _TEITDDLHFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS UPN47_class_I_Rep_2 3 627.2880859375 2 627.287868 1252.56118 0.40644 0.00025496 0.16977 0.00010649 0.57621 0.00036145 627.2879842543962 63.886 0.90035 67.141 66.829 67.73 3.2556 168 75 3 0 0 0 0.076747 6 15197 15123;15161;15197;15236;15274;15313 92.653 75.211 1 394610 43441 5352 27515 27527 49894;49895;49896;49897;49898;49899 49896 -0.05499507181343688 TEITDDLHFY 10 Unmodified _TEITDDLHFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS UPN47_class_I_Rep_3 4 627.2882080078125 2 627.287868 1252.56118 0.43701 0.00027413 0.21534 0.00013508 0.65235 0.00040921 627.2881026248723 63.874 0.85564 67.048 66.83 67.685 3.1741 142 65 3 0 0 0 0.14162 7 15273 15192;15197;15234;15273;15318;15353;15402 82.529 68.124 1 306590 43442 5352 27515 27527 49900;49901;49902;49903;49904;49905;49906 49903 -0.05499507181343688 TEKLKEQL 8 Unmodified _TEKLKEQL_ 0 0 0 REV__ENST00000529035.1_1_11:8157336-8161717:-|nuORF REV__ENST00000529035.1_1_11:8157336-8161717:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 495.2436828613281 2 494.787307 987.560061 -0.58696 -0.00029042 0.40444 0.00020011 -0.18251 -9.0306E-05 494.78754546027153 18.544 0.85792 21.898 21.504 22.362 3.3545 124 90 2 0 0 0 0.72333 1 1524 1524 11.64 0 1 71441 + 43443 20172 27516 27528 49907 49907 0.06578323240421469 TEKLLQNKG 9 Unmodified _TEKLLQNKG_ 0 0 0 L1MA9_dup10668|chr10:26841281-26842489:-|1.1182135813435636|0.0115895692445337|6.59|151.0|33|3|sense L1MA9_dup10668|chr10:26841281-26842489:-|1.1182135813435636|0.0115895692445337|6.59|151.0|33|3|sense L1MA9_dup10668|chr10:26841281-26842489:-|1.1182135813435636|0.0115895692445337|6.59|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.79736328125 2 515.798206 1029.58186 0.32319 0.0001667 -0.54045 -0.00027876 -0.21726 -0.00011206 515.7976120178299 29.27 0.042595 32.82 32.806 32.849 3.5499 6 4 2 0 0 0 0.47493 1 4043 4043 3.2813 0 1 31871 43444 10081 27517 27529 49908 49908 0.06825127988986424 TEKLRRRKRN 10 Unmodified _TEKLRRRKRN_ 0 0 0 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 REV__nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-MSMS UPN47_class_I_Rep_1 2 452.9491882324219 3 452.948009 1355.8222 0.18652 8.4483E-05 2.136 0.00096751 2.3226 0.001052 452.94921735375544 101.32 0.044144 105.12 105.09 105.13 3.7942 9 6 2 0 0 0 0.56337 1 24994 24994 1.4551 0 1 455800 + 43445 18525 27518 27530 49909 49909 0.15851962099736738 TEKQGMTHR 9 Unmodified _TEKQGMTHR_ 0 0 0 REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|31|2|sense REV__L1M1_dup2379|chr4:83082197-83084553:-|1.0854248714097154|0.0101500350604847|6.74|151.0|31|2|sense MSMS UPN47_class_I_Rep_3 4 544.2350463867188 2 544.26929 1086.52403 NaN NaN NaN NaN NaN NaN NaN 49.865 1 53.091 52.591 53.591 3.2262 0 0 0 0.38639 1 10966 10966 3.9444 0.3479 1 + 43446 24044 27519 27531 49910 49910 -0.015774572080772487 TEKVLAAVY 9 Unmodified _TEKVLAAVY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ENSG00000109107|ENST00000226253|ALDOC nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN46_class_I_Rep_3 1 497.2845458984375 2 497.2844 992.554247 0.26008 0.00012933 0.15615 7.7652E-05 0.41623 0.00020699 497.28434610037283 48.691 0.86918 48.691 48.309 49.178 0 165 83 3 0 0 0 0.053261 4 10215 10099;10136;10215;10257 47.594 15.289 1 895560 43447 3556 27520 27532 49911;49912;49913;49914 49913 0.05767224728754172 TEKVLAAVY 9 Unmodified _TEKVLAAVY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ENSG00000109107|ENST00000226253|ALDOC nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-SECPEP UPN46_class_I_Rep_3 1 497.80084228515625 2 497.2844 992.554247 0.25656 0.00012758 -0.7351 -0.00036555 -0.47855 -0.00023797 497.2842561481071 49.401 0.070488 49.401 49.369 49.439 0 9 7 2 0 0 0 0.11021 1 10373 10373 14.838 3.198 1 43142 43448 3556 27520 27532 49915 49915 0.05767224728754172 TEKVTRPR 8 Unmodified _TEKVTRPR_ 0 0 0 REV__Charlie24_dup114|chr2:24743129-24744717:-|1.5699956107078594|0.017174743747649|6.51|151.0|50|3|sense REV__Charlie24_dup114|chr2:24743129-24744717:-|1.5699956107078594|0.017174743747649|6.51|151.0|50|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 493.3292236328125 2 493.790715 985.566878 -0.122 -6.0244E-05 -3.9238 -0.0019375 -4.0458 -0.0019978 493.78936630754606 21.647 0.037338 25.071 25.056 25.093 3.4241 5 3 2 0 0 0 0.72333 1 2453 2453 5.2307 0 1 24620 + 43449 17362 27521 27533 49916 49916 0.07351680911654057 TELEDVADVH 10 Unmodified _TELEDVADVH_ 0 0 0 ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A MSMS UPN47_class_I_Rep_1 2 564.2654418945312 2 564.264393 1126.51423 NaN NaN NaN NaN NaN NaN NaN 48.194 1 51.876 51.376 52.376 3.6819 0 0 0 0.53105 1 10375 10375 1.4819 0.15237 1 43450 1001 27522 27534 49917 49917 -0.043963667324760536 TELERAFGYY 10 Unmodified _TELERAFGYY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MULTI-MSMS UPN47_class_I_Rep_1 2 624.7982788085938 2 624.798403 1247.58225 0.40702 0.00025431 -0.083945 -5.2449E-05 0.32308 0.00020186 624.7982574926173 55.975 1.0304 59.453 59.043 60.074 3.4785 157 57 4 0 0 0 0.12241 7 12744 12659;12705;12744;12787;12827;12873;12928 75.571 45.73 1 622200 43451 1996 27523 27535 49918;49919;49920;49921;49922;49923;49924 49920 -0.03163497081800415 TELERAFGYY 10 Unmodified _TELERAFGYY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MULTI-MSMS UPN47_class_I_Rep_2 3 624.7984008789062 2 624.798403 1247.58225 0.51825 0.0003238 -0.27307 -0.00017062 0.24518 0.00015319 624.7981107994398 56.244 0.90115 59.545 59.152 60.053 3.3009 163 54 4 0 0 0 0.15375 6 12848 12760;12807;12848;12888;12932;12975 65.474 41.684 1 532320 43452 1996 27523 27535 49925;49926;49927;49928;49929;49930 49927 -0.03163497081800415 TELERAFGYY 10 Unmodified _TELERAFGYY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MSMS UPN47_class_I_Rep_2 3 624.7982177734375 2 624.798403 1247.58225 NaN NaN NaN NaN NaN NaN NaN 56.753 1 60.054 59.554 60.554 3.3009 0 0 0 0.53105 1 13017 13017 17.443 7.3687 1 43453 1996 27523 27535 49931 49931 -0.03163497081800415 TELERAFGYY 10 Unmodified _TELERAFGYY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MSMS UPN47_class_I_Rep_2 3 624.7973022460938 2 624.798403 1247.58225 NaN NaN NaN NaN NaN NaN NaN 56.95 1 60.251 59.751 60.751 3.3009 0 0 0 0.53105 1 13076 13076 12.873 7.0892 1 43454 1996 27523 27535 49932 49932 -0.03163497081800415 TELERAFGYY 10 Unmodified _TELERAFGYY_ 0 0 0 nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 nc|ENSG00000112081|P84103-2|SRSF3 MULTI-MSMS UPN47_class_I_Rep_3 4 624.7985229492188 2 624.798403 1247.58225 0.40297 0.00025177 -0.15043 -9.3985E-05 0.25254 0.00015779 624.798260135966 56.423 0.95813 59.595 59.184 60.143 3.1721 172 66 4 0 0 0 0.15375 6 12942 12865;12903;12942;12985;13030;13070 65.474 35.633 1 512160 43455 1996 27523 27535 49933;49934;49935;49936;49937;49938 49935 -0.03163497081800415 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS UPN46_class_I_Rep_3 1 544.7847290039062 2 544.784764 1087.55498 0.31137 0.00016963 0.10388 5.6592E-05 0.41525 0.00022622 544.7848255662191 62.749 0.35341 62.749 62.662 63.016 0 50 31 2 0 0 0 0.056917 3 14056 14056;14091;14105 46.021 25.567 1 226270 43456 2717 27524 27536 49939;49940;49941 49939 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_1 5 544.7852172851562 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.291 1 60.786 60.286 61.286 3.4942 0 0 0 0.2088 1 12401 12401 15.847 4.2069 1 43457 2717 27524 27536 49942 49942 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_1 5 544.7613525390625 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.411 1 60.905 60.405 61.405 3.4942 0 0 0 0.052575 1 12437 12437 36.044 14.298 1 43458 2717 27524 27536 49943 49943 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_1 5 544.7844848632812 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.441 1 60.935 60.435 61.435 3.4942 0 0 0 0.2088 1 12446 12446 15.847 5.0233 1 43459 2717 27524 27536 49944 49944 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_1 5 544.7845458984375 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.591 1 61.085 60.585 61.585 3.4942 0 0 0 0.29868 1 12491 12491 10.824 2.0785 1 43460 2717 27524 27536 49945 49945 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_2 6 544.7849731445312 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.283 1 60.797 60.297 61.297 3.5142 0 0 0 0.11494 1 12377 12377 21.747 5.8995 1 43461 2717 27524 27536 49946 49946 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_2 6 544.7852172851562 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.423 1 60.937 60.437 61.437 3.5142 0 0 0 0.041661 1 12418 12418 39.957 19.504 1 43462 2717 27524 27536 49947 49947 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_3 7 544.78515625 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.291 1 60.823 60.323 61.323 3.5317 0 0 0 0.066339 1 12310 12310 32.305 11.852 1 43463 2717 27524 27536 49948 49948 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_3 7 544.7838745117188 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.304 1 60.836 60.336 61.336 3.5317 0 0 0 0.11494 1 12314 12314 21.747 5.8995 1 43464 2717 27524 27536 49949 49949 0.014700193778026005 TELEYIHAL 9 Unmodified _TELEYIHAL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MSMS UPN48_class_I_Rep_3 7 544.7835693359375 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 57.379 1 60.911 60.411 61.411 3.5317 0 0 0 0.15455 1 12338 12338 19.257 4.4187 1 43465 2717 27524 27536 49950 49950 0.014700193778026005 TELGIFINSV 10 Unmodified _TELGIFINSV_ 0 0 0 L1M4_dup17528|chr16:55514932-55516123:+|2.966237636448325|0.0162628227666918|7.51|150.0|46|1|anti-sense L1M4_dup17528|chr16:55514932-55516123:+|2.966237636448325|0.0162628227666918|7.51|150.0|46|1|anti-sense L1M4_dup17528|chr16:55514932-55516123:+|2.966237636448325|0.0162628227666918|7.51|150.0|46|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 546.8010864257812 2 546.800414 1091.58628 0.34282 0.00018745 0.50654 0.00027697 0.84935 0.00046443 546.8007221243496 70.87 0.48795 70.87 70.55 71.038 0 80 51 2 0 0 0 0.84575 1 16266 16266 12.241 0 1 324310 43466 8862 27525 27537 49951 49951 0.04414592411899321 TELKLWRGAFF 11 Unmodified _TELKLWRGAFF_ 0 0 0 REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|70|1|sense REV__L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|70|1|sense MSMS UPN48_class_I_Rep_2 6 456.5821838378906 3 456.587195 1366.73976 NaN NaN NaN NaN NaN NaN NaN 52.123 1 55.762 55.262 56.262 3.639 0 0 0 0.38417 1 10801 10801 1.2148 0 1 + 43467 30158 27526 27538 49952 49952 0.07105627248211022 TELKQKPH 8 Unmodified _TELKQKPH_ 0 0 0 L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|17|1|sense L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|17|1|sense L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 490.78173828125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 30.157 1 33.699 33.199 34.199 3.542 0 0 0 0.40643 1 4292 4292 2.0598 0 1 43468 13875 27527 27539 49953 49953 0.054488761630864246 TELKSMLYVS 10 Unmodified _TELKSMLYVS_ 0 0 0 L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|46|3|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|46|3|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|46|3|sense MSMS UPN48_class_I_Rep_1 5 585.806396484375 2 585.807382 1169.60021 NaN NaN NaN NaN NaN NaN NaN 34.509 1 38.024 37.524 38.524 3.5144 0 0 0 0.53105 1 5529 5529 1.3295 0 1 43469 12662 27528 27540 49954 49954 0.022195018487082052 TELKSMLYVS 10 Unmodified _TELKSMLYVS_ 0 0 0 L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|46|3|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|46|3|sense L1ME3A_dup2460|chr2:239172320-239174059:+|1.331518306532235|0.058638686454113|4.51|151.0|46|3|sense MSMS UPN48_class_I_Rep_3 7 585.8076782226562 2 585.807382 1169.60021 NaN NaN NaN NaN NaN NaN NaN 32.393 1 36.082 35.582 36.582 3.6896 0 0 0 0.53105 1 4918 4918 1.3295 0 1 43470 12662 27528 27540 49955 49955 0.022195018487082052 TELLDTYSW 9 Unmodified _TELLDTYSW_ 0 0 0 MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.2662353515625 2 564.266404 1126.51826 0.35291 0.00019913 -0.086019 -4.8538E-05 0.26689 0.0001506 564.2662536215907 69.524 0.79693 72.892 72.572 73.369 3.3678 184 72 3 0 0 0 0.12799 5 16817 16779;16817;16891;16929;16982 28.487 28.487 1 492350 43471 15903 27529 27541 49956;49957;49958;49959;49960 49957 -0.039942772387803416 TELLDTYSW 9 Unmodified _TELLDTYSW_ 0 0 0 MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.2664794921875 2 564.266404 1126.51826 0.40542 0.00022877 -0.17938 -0.00010122 0.22604 0.00012754 564.2661961305155 69.784 0.8231 73.06 72.702 73.525 3.2761 178 70 4 0 0 0 0.12799 6 16915 16874;16915;16951;16990;17027;17066 28.487 28.487 1 523760 43472 15903 27529 27541 49961;49962;49963;49964;49965;49966 49962 -0.039942772387803416 TELLDTYSW 9 Unmodified _TELLDTYSW_ 0 0 0 MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MER21C_dup4252|chr14:103583579-103584033:-|1.1422970443104776|0.0634571521121586|4.17|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.2666015625 2 564.266404 1126.51826 0.44452 0.00025083 -0.21227 -0.00011978 0.23225 0.00013105 564.2662124269827 69.768 0.82824 72.972 72.626 73.454 3.2044 170 65 3 0 0 0 0.12799 4 17011 16969;17011;17050;17131 28.487 28.487 1 621980 43473 15903 27529 27541 49967;49968;49969;49970 49968 -0.039942772387803416 TELLERYTI 9 Unmodified _TELLERYTI_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-4|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-4|ACSS1 MULTI-MSMS UPN46_class_I_Rep_3 1 569.3108520507812 2 569.311146 1136.60774 0.21126 0.00012027 -0.077485 -4.4113E-05 0.13377 7.6159E-05 569.3110604827243 30.174 0.59108 30.174 29.834 30.426 0 79 50 2 0 0 0 0.49026 1 4803 4803 1.6526 0 1 105580 + 43474 19754 27530 27542 49971 49971 0.044899774406076176 TELLGTFRL 9 Unmodified _TELLGTFRL_ 0 0 0 REV__MER21C_dup1038|chr3:71529365-71530119:+|1.366676820871464|0.0071935342993787|7.57|151.0|40|2|anti-sense REV__MER21C_dup1038|chr3:71529365-71530119:+|1.366676820871464|0.0071935342993787|7.57|151.0|40|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 525.3052978515625 2 525.303124 1048.5917 0.31283 0.00016433 -0.45119 -0.00023701 -0.13836 -7.2678E-05 525.3027540882183 57.389 1.0132 60.826 60.499 61.512 3.437 179 80 3 0 0 0 0.10248 1 13366 13366 19.362 4.5237 1 337150 + 43475 31218 27531 27543 49972 49972 0.06934315994362805 TELNLEIGIL 10 Unmodified _TELNLEIGIL_ 0 0 0 REV__L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|60|1|anti-sense REV__L1MC1_dup178|chr1:52453438-52454996:+|1.3299864262487022|0.0260525028742378|5.67|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_2 3 557.8192749023438 2 557.821347 1113.62814 NaN NaN NaN NaN NaN NaN NaN 65.67 1 68.926 68.426 69.426 3.2556 0 0 0 0.53105 1 15728 15728 2.9952 0 1 + 43476 26531 27532 27544 49973 49973 0.07587148100424201 TELQDPHSLS 10 Unmodified _TELQDPHSLS_ 0 0 0 ENSG00000153157|ENST00000283141|SYCP2L ENSG00000153157|ENST00000283141|SYCP2L ENSG00000153157|ENST00000283141|SYCP2L MULTI-MSMS UPN47_class_I_Rep_1 2 564.2656860351562 2 563.772385 1125.53022 0.18016 0.00010157 3.6005 0.0020298 3.7806 0.0021314 563.774354191725 47.952 0.46391 51.634 51.453 51.917 3.6819 28 22 2 0 0 0 0.55448 1 10327 10327 4.897 1.3005 1 63191 43477 3640 27533 27545 49974 49974 -0.027526604955710354 TELSPSWIS 9 Unmodified _TELSPSWIS_ 0 0 0 REV__ENST00000367838.5_1_1:168103116-168105616:-|nuORF REV__ENST00000367838.5_1_1:168103116-168105616:-|nuORF MSMS UPN47_class_I_Rep_2 3 510.2754821777344 2 510.25584 1018.49713 NaN NaN NaN NaN NaN NaN NaN 31.084 1 34.558 34.058 35.058 3.4744 0 0 0 0.29868 1 5216 5216 10.824 0 1 + 43478 21935 27534 27546 49975 49975 -0.0113824254760857 TELVGGAEPL 10 Unmodified _TELVGGAEPL_ 0 0 0 REV__ENST00000482556.5_1_20:47242047-47242404:-|nuORF REV__ENST00000482556.5_1_20:47242047-47242404:-|nuORF MSMS UPN46_class_I_Rep_3 1 493.2635803222656 2 493.263665 984.512776 NaN NaN NaN NaN NaN NaN NaN 68.754 1 68.754 68.254 69.254 0 0 0 0 0.53105 1 15718 15718 9.3831 0 1 + 43479 22576 27535 27547 49976 49976 0.01990043969431099 TELVLFGLNP 10 Unmodified _TELVLFGLNP_ 0 0 0 L1M1_dup8461|chr15:49214639-49217072:-|1.1932509002753788|0.04874651086626|4.61|151.0|150|3|anti-sense L1M1_dup8461|chr15:49214639-49217072:-|1.1932509002753788|0.04874651086626|4.61|151.0|150|3|anti-sense L1M1_dup8461|chr15:49214639-49217072:-|1.1932509002753788|0.04874651086626|4.61|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_1 5 551.8086547851562 2 551.810782 1101.60701 NaN NaN NaN NaN NaN NaN NaN 32.829 1 36.356 35.856 36.856 3.5266 0 0 0 0.53105 1 5041 5041 3.5965 0.31518 1 43480 8638 27536 27548 49977 49977 0.06027182791558516 TEMEWAVY 8 Unmodified _TEMEWAVY_ 0 0 0 REV__MER1A_dup279|chr2:53957165-53957664:-|1.2241396753162652|0.0072858302923686|7.39|151.0|37|3|anti-sense REV__MER1A_dup279|chr2:53957165-53957664:-|1.2241396753162652|0.0072858302923686|7.39|151.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 514.72265625 2 514.723318 1027.43208 NaN NaN NaN NaN NaN NaN NaN 29.941 1 29.941 29.441 30.441 0 0 0 0 0.40364 1 4808 4808 5.7604 0 1 + 43481 31125 27537 27549 49978 49978 -0.08053560345115329 TEMWVWKLF 9 Unmodified _TEMWVWKLF_ 0 0 0 Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|18|2|sense Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|18|2|sense Tigger4_dup986|chr10:96850747-96851442:+|1.9233273599109293|0.0093187214702313|7.69|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 620.3156127929688 2 620.315177 1238.6158 NaN NaN NaN NaN NaN NaN NaN 39.513 1 43.242 42.742 43.742 3.7297 0 0 0 0.4007 1 7020 7020 0.52476 0 1 43482 33432 27538 27550 49979 49979 0.006038331564013788 TENDIANFF 9 Unmodified _TENDIANFF_ 0 0 0 nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 MULTI-MSMS UPN47_class_I_Rep_1 2 535.7432861328125 2 535.743096 1069.47164 0.37447 0.00020062 0.11988 6.4223E-05 0.49435 0.00026484 535.7432156285653 73.909 1.1304 77.295 76.96 78.09 3.3861 285 108 4 0 0 0 0.0051528 1 18163 18163 131.27 76.494 1 906270 43483 6986 27539 27551 49980 49980 -0.060317170700500355 TENDIANFF 9 Unmodified _TENDIANFF_ 0 0 0 nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 MULTI-MSMS UPN47_class_I_Rep_2 3 535.7433471679688 2 535.743096 1069.47164 0.38885 0.00020832 -0.044597 -2.3893E-05 0.34425 0.00018443 535.7430926624596 74.134 0.91158 77.439 77.027 77.939 3.3048 279 95 4 0 0 0 0.014636 2 18249 18249;18287 139.14 84.365 1 968130 43484 6986 27539 27551 49981;49982 49981 -0.060317170700500355 TENDIANFF 9 Unmodified _TENDIANFF_ 0 0 0 nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 nc|ENSG00000096746|P31942-6|HNRNPH3 MULTI-MSMS UPN47_class_I_Rep_3 4 535.7433471679688 2 535.743096 1069.47164 0.43162 0.00023124 -0.010876 -5.827E-06 0.42074 0.00022541 535.7431310529793 74.172 1.1294 77.408 76.979 78.108 3.2363 333 121 4 0 0 0 0.0064161 1 18319 18319 126.57 71.792 1 863860 43485 6986 27539 27551 49983 49983 -0.060317170700500355 TENDIRVMF 9 Oxidation (M) _TENDIRVM(Oxidation (M))F_ TENDIRVM(1)F TENDIRVM(86)F 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS UPN46_class_I_Rep_3 1 571.2730102539062 2 570.771331 1139.52811 0.4055 0.00023145 -0.16952 -9.6755E-05 0.23599 0.00013469 570.7712614948014 53.289 0.59055 53.289 52.962 53.552 0 136 60 3 0 0 0 0.0070571 5 11413 11368;11376;11413;11449;11483 106.94 68.966 1 630700 43486 3531 27540 27552 49984;49985;49986;49987;49988 49986 119 -0.036074125050163275 TENDIRVMF 9 Oxidation (M) _TENDIRVM(Oxidation (M))F_ TENDIRVM(1)F TENDIRVM(96)F 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS UPN47_class_I_Rep_1 2 570.7716064453125 2 570.771331 1139.52811 0.16874 9.631E-05 -0.035516 -2.0271E-05 0.13322 7.6039E-05 570.771455517625 48.155 0.93922 51.836 51.488 52.427 3.6819 118 52 3 0 0 0 0.0078401 3 10355 10311;10355;10403 96.367 67.88 1 524440 43487 3531 27540 27552 49989;49990;49991 49990 119 -0.036074125050163275 TENDIRVMF 9 Oxidation (M) _TENDIRVM(Oxidation (M))F_ TENDIRVM(1)F TENDIRVM(40)F 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS UPN47_class_I_Rep_1 2 571.2745971679688 2 570.771331 1139.52811 0.24736 0.00014118 0.57257 0.00032681 0.81993 0.00046799 570.7714146445213 51.137 0.79484 54.73 54.077 54.872 3.5932 55 36 2 0 0 0 0.073198 1 11296 11296 40.239 27.999 1 134850 43488 3531 27540 27552 49992 49992 119 -0.036074125050163275 TENDIRVMF 9 Oxidation (M) _TENDIRVM(Oxidation (M))F_ TENDIRVM(1)F TENDIRVM(86)F 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS UPN47_class_I_Rep_2 3 570.7716674804688 2 570.771331 1139.52811 0.36646 0.00020917 -0.20686 -0.00011807 0.1596 9.1096E-05 570.7713555068905 48.429 1.1091 51.776 51.465 52.574 3.3465 119 61 3 0 0 0 0.0070571 3 10472 10432;10472;10514 86.332 60.933 1 555380 43489 3531 27540 27552 49993;49994;49995 49994 119 -0.036074125050163275 TENDIRVMF 9 Oxidation (M) _TENDIRVM(Oxidation (M))F_ TENDIRVM(1)F TENDIRVM(93)F 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS UPN47_class_I_Rep_3 4 570.7716064453125 2 570.771331 1139.52811 0.41046 0.00023428 -0.41854 -0.00023889 -0.0080738 -4.6083E-06 570.7711930592634 48.538 1.0834 51.773 51.426 52.509 3.2345 121 58 3 0 0 0 0.0051925 4 10558 10514;10558;10600;10644 92.653 62.017 1 649930 43490 3531 27540 27552 49996;49997;49998;49999 49997 119 -0.036074125050163275 TENDIYNFF 9 Unmodified _TENDIYNFF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_1 2 581.756591796875 2 581.756204 1161.49785 0.40492 0.00023556 0.016141 9.3903E-06 0.42106 0.00024495 581.7562482007803 79.128 1.234 82.574 82.13 83.364 3.4456 415 121 5 0 0 0 2.6985E-05 11 19692 19581;19616;19653;19670;19692;19733;19769;19808;19840;19874;19904 187.3 135.03 1 9003600 43491 4439;4400;2558 27541 27553 50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010 50004 -0.07643447898567501 TENDIYNFF 9 Unmodified _TENDIYNFF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_2 3 581.756591796875 2 581.756204 1161.49785 0.49469 0.00028779 -0.025254 -1.4691E-05 0.46944 0.0002731 581.7561901515146 79.245 1.2643 82.6 82.138 83.402 3.3554 445 132 5 0 0 0 8.5747E-06 10 19745 19595;19630;19669;19707;19745;19783;19818;19851;19884;19920 173.69 112.33 1 5881000 43492 4439;4400;2558 27541 27553 50011;50012;50013;50014;50015;50016;50017;50018;50019;50020 50015 -0.07643447898567501 TENDIYNFF 9 Unmodified _TENDIYNFF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF MSMS UPN47_class_I_Rep_2 3 581.75634765625 2 581.756204 1161.49785 NaN NaN NaN NaN NaN NaN NaN 80.359 1 83.728 83.228 84.228 3.3694 0 0 0 0.13613 1 20014 20014 20.415 6.9067 1 43493 4439;4400;2558 27541 27553 50021 50021 -0.07643447898567501 TENDIYNFF 9 Unmodified _TENDIYNFF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF MSMS UPN47_class_I_Rep_2 3 581.755126953125 2 581.756204 1161.49785 NaN NaN NaN NaN NaN NaN NaN 80.481 1 83.851 83.351 84.351 3.3694 0 0 0 0.37891 1 20041 20041 5.7319 0.50118 1 43494 4439;4400;2558 27541 27553 50022 50022 -0.07643447898567501 TENDIYNFF 9 Unmodified _TENDIYNFF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_3 4 581.7565307617188 2 581.756204 1161.49785 0.4701 0.00027349 0.012958 7.5382E-06 0.48306 0.00028102 581.7562349428861 79.293 1.3833 82.588 82.126 83.51 3.295 495 140 5 0 0 0 4.4599E-05 12 19761 19683;19691;19725;19761;19800;19837;19876;19916;19954;19991;20024;20057 183.04 121.68 1 6692700 43495 4439;4400;2558 27541 27553 50023;50024;50025;50026;50027;50028;50029;50030;50031;50032;50033;50034 50026 -0.07643447898567501 TENGYKPWY 9 Unmodified _TENGYKPWY_ 0 0 0 nc|ENSG00000140479|P29122-8|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6 nc|ENSG00000140479|P29122-8|PCSK6 nc|ENSG00000140479|P29122-8|PCSK6 MULTI-MSMS UPN47_class_I_Rep_1 2 579.2667846679688 2 579.266739 1156.51892 0.31791 0.00018416 -0.47138 -0.00027306 -0.15347 -8.8902E-05 579.2665139317919 54.241 0.74242 57.742 57.531 58.273 3.5014 48 37 2 0 0 0 0.20276 1 12275 12275 20.454 1.1966 1 99353 43496 16698 27542 27554 50035 50035 -0.05307437799046966 TENKEKQD 8 Unmodified _TENKEKQD_ 0 0 0 L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|3|1|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|3|1|sense L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 496.23822021484375 2 496.238178 990.461803 -0.1439 -7.1408E-05 0.16767 8.3202E-05 0.023766 1.1794E-05 496.2382457633752 22.639 0.82784 26.084 25.72 26.548 3.4447 157 75 3 0 0 0 0.82752 1 2639 2639 1.8442 0 1 201780 43497 13839 27543 27555 50036 50036 -0.033809050754143755 TENKQLHI 8 Unmodified _TENKQLHI_ 0 0 0 REV__L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|78|3|sense REV__L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|78|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 491.7690734863281 2 491.769448 981.524344 -0.26222 -0.00012895 0.032631 1.6047E-05 -0.22959 -0.00011291 491.76950821877597 39.073 0.44537 42.738 42.545 42.99 3.6652 47 28 2 0 0 0 0.82752 1 7599 7599 6.7232 0 1 65007 + 43498 24230 27544 27556 50037 50037 0.03284285783422547 TENNVIKSL 9 Unmodified _TENNVIKSL_ 0 0 0 ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110 ENSG00000103540|ENST00000694978|CCP110 ENSG00000103540|ENST00000694978|CCP110 MULTI-SECPEP UPN47_class_I_Rep_2 3 509.7631530761719 2 509.282389 1016.55022 -0.25423 -0.00012948 -0.19899 -0.00010134 -0.45323 -0.00023082 509.2823413359815 38.307 0.2106 41.694 41.599 41.81 3.3879 23 18 2 0 0 0 0.12086 1 7393 7393 7.609 7.609 1 52462 43499 1664 27545 27557 50038 50038 0.04261135235049096 TENTEENRRFY 11 Unmodified _TENTEENRRFY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-SECPEP UPN47_class_I_Rep_1 2 486.7834167480469 3 486.891783 1457.65352 -0.32247 -0.00015701 0.43889 0.00021369 0.11641 5.6679E-05 486.89185142159204 25.662 0.4816 29.424 29.132 29.614 3.7624 61 44 2 0 0 0 22.551 1 3484 3484 3.8459 3.706 1 74384 43500 3556 27546 27558 50039 50039 -0.05700029115087091 TENTEENRRFY 11 Unmodified _TENTEENRRFY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS UPN47_class_I_Rep_2 3 486.8915100097656 3 486.891783 1457.65352 -0.14757 -7.1852E-05 -0.2904 -0.00014139 -0.43797 -0.00021325 487.2260923812735 25.759 0.52926 29.253 29.041 29.571 3.4945 85 50 2 0 0 0 0.67356 1 3604 3604 1.1098 0.6038 1 78801 43501 3556 27546 27558 50040 50040 -0.05700029115087091 TENTEENRRFY 11 Unmodified _TENTEENRRFY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MATCH UPN47_class_I_Rep_3 4 3 486.891783 1457.65352 -0.53173 -0.0002589 -0.05071 -2.469E-05 -0.58244 -0.00028359 486.8917206178712 25.945 0.5151 29.292 29.136 29.651 3.3478 -0.030974 -3.952E-05 NaN 1.1098 74 48 2 NaN NaN NaN NaN 0 NaN NaN 0 61690 43502 3556 27546 27558 -0.05700029115087091 TEPQLSKCTI 10 Unmodified _TEPQLSKCTI_ 0 0 0 REV__nc|ENSG00000184307|Q8IYP9|ZDHHC23 REV__nc|ENSG00000184307|Q8IYP9|ZDHHC23 MULTI-SECPEP UPN48_class_I_Rep_2 6 559.7616577148438 2 560.289356 1118.56416 0.5006 0.00028048 0.79836 0.00044731 1.299 0.0007278 560.2897025362378 68.459 0.30284 71.968 71.894 72.197 3.5083 39 27 2 0 0 0 0.84575 1 15777 15777 13.042 1.4022 1 158340 + 43503 20814 27547 27559 50041 50041 0.009620446718372477 TEPSKLTEL 9 Unmodified _TEPSKLTEL_ 0 0 0 REV__ENSG00000132688|ENST00000368223|NES REV__ENSG00000132688|ENST00000368223|NES MULTI-MSMS UPN47_class_I_Rep_2 3 509.27691650390625 2 509.276772 1016.53899 0.085378 4.3481E-05 0.2719 0.00013847 0.35728 0.00018195 509.27676364935104 64.846 0.12259 68.102 68.077 68.2 3.2556 12 9 2 0 0 0 0.44742 1 15477 15477 5.2969 0.96765 1 224560 + 43504 19029 27548 27560 50042 50042 0.031383131409029374 TEPVKTRYV 9 Unmodified _TEPVKTRYV_ 0 0 0 REV__ENSG00000248383|ENST00000253807|PCDHAC1 REV__ENSG00000248383|ENST00000253807|PCDHAC1 MULTI-MSMS UPN47_class_I_Rep_3 4 546.8069458007812 2 546.806031 1091.59751 0.42266 0.00023111 -0.19328 -0.00010568 0.22938 0.00012543 546.8060743239524 55.144 0.47218 58.322 58.019 58.491 3.1779 36 29 2 0 0 0 0.43982 1 12622 12622 5.7319 0.43497 1 69180 + 43505 21346 27549 27561 50043 50043 0.05537414506034111 TEQDLKEYF 9 Unmodified _TEQDLKEYF_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN47_class_I_Rep_1 2 586.77783203125 2 586.777136 1171.53972 0.23328 0.00013688 0.54498 0.00031978 0.77825 0.00045666 586.777424461923 49.863 0.69588 53.522 53.196 53.892 3.6592 89 39 3 0 0 0 0.079935 4 10856 10816;10856;10902;10941 38.615 21.502 1 226280 43506 2344 27550 27562 50044;50045;50046;50047 50045 -0.03918892210049307 TEQDLKEYF 9 Unmodified _TEQDLKEYF_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN47_class_I_Rep_2 3 586.77734375 2 586.777136 1171.53972 0.44397 0.00026051 0.5295 0.0003107 0.97347 0.00057121 586.777331458314 50.206 0.70723 53.549 53.219 53.927 3.3431 80 35 3 0 0 0 0.073198 5 11036 10947;10993;11036;11087;11093 40.239 17.503 1 246400 43507 2344 27550 27562 50048;50049;50050;50051;50052 50050 -0.03918892210049307 TEQDLKEYF 9 Unmodified _TEQDLKEYF_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN47_class_I_Rep_3 4 586.7777099609375 2 586.777136 1171.53972 0.50268 0.00029496 0.22892 0.00013433 0.7316 0.00042929 586.7771729747028 50.273 0.77198 53.499 53.209 53.981 3.2262 92 45 3 0 0 0 0.092386 2 11087 11045;11087 35.612 15.198 1 212880 43508 2344 27550 27562 50053;50054 50054 -0.03918892210049307 TEQHTRHDTAL 11 Unmodified _TEQHTRHDTAL_ 0 0 0 REV__ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|112|2|anti-sense REV__ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|112|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.87933349609375 3 436.881219 1307.62183 0.15073 6.5852E-05 -3.098 -0.0013535 -2.9473 -0.0012876 436.87921266999786 94.351 0.1853 98.102 98.009 98.194 3.7508 31 25 2 0 0 0 0.67113 1 23446 23446 1.3296 0 1 63875 + 43509 23253 27551 27563 50055 50055 -0.019679770783795902 TEQHTRHDTAL 11 Unmodified _TEQHTRHDTAL_ 0 0 0 REV__ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|112|2|anti-sense REV__ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|112|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.881219 1307.62183 -0.32407 -0.00014158 -1.9043 -0.00083197 -2.2284 -0.00097355 436.87938479151256 94.587 0.153 97.994 97.938 98.091 3.4068 0.004944 0.0012851 NaN 1.3296 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 53674 + 43510 23253 27551 27563 -0.019679770783795902 TEQHTRHDTAL 11 Unmodified _TEQHTRHDTAL_ 0 0 0 REV__ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|112|2|anti-sense REV__ERVL-B4-int_dup1071|chr4:150770628-150772922:-|1.1953313573709108|0.0213312514953249|5.81|151.0|112|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.881219 1307.62183 0.1087 4.7491E-05 -3.1004 -0.0013545 -2.9917 -0.001307 436.8791710920735 94.094 0.10149 97.87 97.782 97.884 3.7761 -0.1183 -0.00028253 NaN 1.3296 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 47864 + 43511 23253 27551 27563 -0.019679770783795902 TEQKFLILI 9 Unmodified _TEQKFLILI_ 0 0 0 L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|81|1|anti-sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|81|1|anti-sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|81|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.836669921875 2 552.8368 1103.65905 0.38424 0.00021242 -0.25386 -0.00014034 0.13038 7.2081E-05 552.8365510394389 61.495 0.94102 64.662 64.297 65.238 3.1667 154 71 3 0 0 0 0.31407 1 14614 14614 13.042 0 1 410410 43512 11175 27552 27564 50056 50056 0.1113634620535322 TEQRKRFR 8 Unmodified _TEQRKRFR_ 0 0 0 REV__ENSG00000178177|ENST00000635767|LCORL REV__ENSG00000178177|ENST00000635767|LCORL MSMS UPN47_class_I_Rep_1 2 560.8187255859375 2 560.820338 1119.62612 NaN NaN NaN NaN NaN NaN NaN 41.523 1 45.202 44.702 45.702 3.6792 0 0 0 0.40746 1 8347 8347 0.69038 0 1 + 43513 20643 27553 27565 50057 50057 0.07109576925836336 TEQTVKVAF 9 Unmodified _TEQTVKVAF_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN46_class_I_Rep_3 1 511.77923583984375 2 511.779482 1021.54441 0.28348 0.00014508 -0.47955 -0.00024542 -0.19607 -0.00010035 511.7792172311103 46.498 0.48102 46.498 46.338 46.819 0 74 49 2 0 0 0 0.025281 3 9558 9524;9558;9614 60.074 23.947 1 188810 43514 2611 27554 27566 50058;50059;50060 50059 0.034500367233818 TEQTVKVAF 9 Unmodified _TEQTVKVAF_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MATCH UPN48_class_I_Rep_1 5 2 511.779482 1021.54441 0.24605 0.00012593 -6.7237 -0.003441 -6.4776 -0.0033151 511.77672351898286 42.887 0.047318 46.397 46.375 46.422 3.5103 -0.050309 -0.0063021 NaN 60.074 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 38775 43515 2611 27554 27566 0.034500367233818 TERKLKQA 8 Unmodified _TERKLKQA_ 0 0 0 ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451 ENST00000444273.6_1_6:56954967-57015704:+|nuORF ENST00000444273.6_1_6:56954967-57015704:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 487.2933349609375 2 487.293091 972.571629 0.18888 9.2041E-05 -0.082816 -4.0356E-05 0.10607 5.1685E-05 487.29306909650984 82.186 0.57391 85.698 85.441 86.015 3.5122 90 68 2 0 0 0 0.82752 1 20501 20501 0.69038 0 1 85353 43516 2003 27555 27567 50061 50061 0.08424565054417599 TERMIDRLWLL 11 Unmodified _TERMIDRLWLL_ 0 0 0 Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|15|2|sense Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|15|2|sense Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 482.2819519042969 3 482.602628 1444.78605 NaN NaN NaN NaN NaN NaN NaN 29.908 1 33.232 32.732 33.732 3.3235 0 0 0 0.38417 1 4894 4894 0.50596 0 1 43517 429 27556 27568 50062 50062 0.08145324088013695 TERRTVVI 8 Unmodified _TERRTVVI_ 0 0 0 L1MA5_dup391|chr2:74017280-74017952:-|1.6091566055780806|0.0051771518392987|8.28|151.0|15|2|sense L1MA5_dup391|chr2:74017280-74017952:-|1.6091566055780806|0.0051771518392987|8.28|151.0|15|2|sense L1MA5_dup391|chr2:74017280-74017952:-|1.6091566055780806|0.0051771518392987|8.28|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.2928466796875 2 487.293091 972.571629 0.18888 9.2041E-05 -0.082816 -4.0356E-05 0.10607 5.1685E-05 487.29306909650984 82.186 0.57391 85.698 85.441 86.015 3.5122 90 68 2 0 0 0 0.82752 1 20537 20537 0.79363 0.79363 1 85353 43518 9913 27557 27569 50063 50063 0.08424565054417599 TESLQLLGK 9 Unmodified _TESLQLLGK_ 0 0 0 chr7:100338889-100345944|31|10.06|0.0|19.94|+|0|STAG3L5P-PVRIG2P-PILRB,None|1 chr7:100338889-100345944|31|10.06|0.0|19.94|+|0|STAG3L5P-PVRIG2P-PILRB,None|1 chr7:100338889-100345944|31|10.06|0.0|19.94|+|0|STAG3L5P-PVRIG2P-PILRB,None|1 MULTI-MSMS UPN47_class_I_Rep_1 2 494.78680419921875 2 494.787307 987.560061 -0.33407 -0.00016529 0.11463 5.6719E-05 -0.21944 -0.00010858 494.7873531316533 17.806 1.0785 21.356 20.962 22.041 3.5504 215 129 2 0 0 0 0.49026 1 1470 1470 1.6526 0 1 108270 43519 617 27558 27570 50064 50064 0.06578323240444206 TESRQGPQP 9 Unmodified _TESRQGPQP_ 0 0 0 REV__AluJr4_dup11551|chr10:824211-824494:+|1.9837085679641664|0.3569482662740282|2.47|151.0|11|3|sense REV__AluJr4_dup11551|chr10:824211-824494:+|1.9837085679641664|0.3569482662740282|2.47|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 500.65899658203125 2 500.246338 998.478122 NaN NaN NaN NaN NaN NaN NaN 40.093 1 43.598 43.098 44.098 3.5048 0 0 0 0.38073 1 7155 7155 5.2969 0.54088 1 + 43520 17070 27559 27571 50065 50065 -0.0211777911866875 TETETRTTKSS 11 Unmodified _TETETRTTKSS_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MSMS UPN46_class_I_Rep_3 1 620.8040161132812 2 620.804414 1239.59427 NaN NaN NaN NaN NaN NaN NaN 14.889 1 14.889 14.389 15.389 0 0 0 0 0.38417 1 746 746 0 0 1 + 43521 20726 27560 27572 50066 50066 -0.0159392512928207 TETGVMSCLSI 11 Unmodified _TETGVMSCLSI_ 0 0 0 REV__ENSG00000103064.15,SLC7A6,chr16,+,I5.1,68273905,68274690|39|6.59|1|intron REV__ENSG00000103064.15,SLC7A6,chr16,+,I5.1,68273905,68274690|39|6.59|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 570.76513671875 2 570.7674 1139.52025 0.51032 0.00029127 -1.2862 -0.0007341 -0.77584 -0.00044282 570.7672663294901 51.783 1.3559 55.116 54.194 55.55 3.3332 113 70 3 0 0 0 0.23238 4 11464 11419;11444;11464;11555 38.176 5.734 1 333860 + 43522 18212 27561 27573 50067;50068;50069;50070 50069 -0.043933078168038264 TEVFIIHCVF 10 Unmodified _TEVFIIHCVF_ 0 0 0 REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|98|2|anti-sense REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|98|2|anti-sense MSMS UPN48_class_I_Rep_2 6 604.31103515625 2 604.312635 1206.61072 NaN NaN NaN NaN NaN NaN NaN 69.348 1 72.87 72.37 73.37 3.5216 0 0 0 0.53105 1 16060 16060 6.2058 0.97511 1 + 43523 24464 27562 27574 50071 50071 0.015675292937658014 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MULTI-SECPEP UPN48_class_I_Rep_1 5 480.2740173339844 2 480.274032 958.533512 0.13108 6.2953E-05 -0.29122 -0.00013987 -0.16015 -7.6914E-05 480.2738055214049 42.564 0.53296 46.072 45.86 46.393 3.5079 74 43 2 0 0 0 0.11642 1 7913 7913 12.241 2.8575 1 124090 43524 2674 27563 27575 50072 50072 0.05258634349092972 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MSMS UPN48_class_I_Rep_2 6 480.2740478515625 2 480.274032 958.533512 NaN NaN NaN NaN NaN NaN NaN 42.155 1 45.913 45.413 46.413 3.7579 0 0 0 0.23173 1 7772 7772 14.405 0.49933 1 43525 2674 27563 27575 50073 50073 0.05258634349092972 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MSMS UPN48_class_I_Rep_2 6 480.2748107910156 2 480.274032 958.533512 NaN NaN NaN NaN NaN NaN NaN 42.296 1 46.054 45.554 46.554 3.7579 0 0 0 0.081356 1 7813 7813 28.495 8.08 1 43526 2674 27563 27575 50074 50074 0.05258634349092972 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MSMS UPN48_class_I_Rep_2 6 480.2729797363281 2 480.274032 958.533512 NaN NaN NaN NaN NaN NaN NaN 42.442 1 46.2 45.7 46.7 3.7579 0 0 0 0.13613 1 7858 7858 20.415 2.2682 1 43527 2674 27563 27575 50075 50075 0.05258634349092972 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MULTI-SECPEP UPN48_class_I_Rep_3 7 480.2738952636719 2 480.274032 958.533512 0.1377 6.6132E-05 -0.16655 -7.9991E-05 -0.028857 -1.3859E-05 480.2738505679346 42.441 0.61687 46.083 45.814 46.431 3.6415 84 49 2 0 0 0 0.11198 1 7779 7779 15.248 5.1746 1 140300 43528 2674 27563 27575 50076 50076 0.05258634349092972 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 480.274032 958.533512 -0.22242 -0.00010682 -0.043138 -2.0718E-05 -0.26556 -0.00012754 480.2738791120478 42.691 0.73072 46.379 46.118 46.849 3.6875 0.085846 -4.4061E-06 NaN 33.445 82 51 2 NaN NaN NaN NaN 0 NaN NaN 0 72102 43529 2674 27563 27575 0.05258634349092972 TEVGEKIAL 9 Unmodified _TEVGEKIAL_ 0 0 0 ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000460032.1_1_X:24091216-24091381:+|nuORF ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000180574|ENST00000538173|EIF2S3B MULTI-MATCH UPN47_class_I_Rep_3 4 2 480.274032 958.533512 -0.23196 -0.00011141 0.22074 0.00010602 -0.011218 -5.3878E-06 480.27405054917426 43.209 0.65291 46.451 46.131 46.784 3.2419 0.15825 0.00024906 NaN 33.445 66 41 2 NaN NaN NaN NaN 0 NaN NaN 0 71673 43530 2674 27563 27575 0.05258634349092972 TEVLESFKL 9 Unmodified _TEVLESFKL_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MSMS UPN48_class_I_Rep_1 5 533.29541015625 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 62.491 1 65.954 65.454 66.454 3.4625 0 0 0 0.13613 1 13990 13990 20.415 6.5085 1 43531 1695 27564 27576 50077 50077 0.04567190037619184 TEVLQYQLQ 9 Unmodified _TEVLQYQLQ_ 0 0 0 ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR MSMS UPN48_class_I_Rep_3 7 561.2954711914062 2 561.295496 1120.57644 NaN NaN NaN NaN NaN NaN NaN 48.338 1 51.972 51.472 52.472 3.6339 0 0 0 0.38639 1 9585 9585 3.9444 0 1 43532 4926 27565 27577 50078 50078 0.02097404406526948 TEVMYPLH 8 Unmodified _TEVMYPLH_ 0 0 0 L1MD3_dup2355|chr8:63203462-63204103:-|1.3409665550769314|0.0403813732794965|5.05|151.0|32|1|anti-sense L1MD3_dup2355|chr8:63203462-63204103:-|1.3409665550769314|0.0403813732794965|5.05|151.0|32|1|anti-sense L1MD3_dup2355|chr8:63203462-63204103:-|1.3409665550769314|0.0403813732794965|5.05|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_3 4 495.2441101074219 2 495.241678 988.468803 NaN NaN NaN NaN NaN NaN NaN 19.666 1 23.017 22.517 23.517 3.3514 0 0 0 0.40364 1 1880 1880 5.7604 0.52976 1 43533 12066 27566 27578 50079 50079 -0.025892637285664932 TEVPVEPVL 9 Unmodified _TEVPVEPVL_ 0 0 0 ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-SECPEP UPN48_class_I_Rep_1 5 491.79559326171875 2 491.776408 981.538263 0.27542 0.00013545 -0.093582 -4.6022E-05 0.18184 8.9425E-05 491.7762699766674 64.311 0.17745 67.769 67.727 67.905 3.4578 18 16 2 0 0 0 0.12099 1 14572 14572 6.7232 0 1 90370 43534 1543 27567 27579 50080 50080 0.04675518491865205 TEVPVEPVL 9 Unmodified _TEVPVEPVL_ 0 0 0 ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-MSMS UPN48_class_I_Rep_2 6 491.7771911621094 2 491.776408 981.538263 0.30479 0.00014989 0.70342 0.00034592 1.0082 0.00049582 491.77638228402594 64.163 0.3201 67.637 67.459 67.779 3.4743 29 24 2 0 0 0 0.35081 2 14445 14445;14489 10.824 0 1 67030 43535 1543 27567 27579 50081;50082 50081 0.04675518491865205 TEVPVEPVL 9 Unmodified _TEVPVEPVL_ 0 0 0 ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN ENSG00000100941|ENST00000216832|PNN MULTI-SECPEP UPN48_class_I_Rep_3 7 491.7765808105469 2 491.776408 981.538263 0.26825 0.00013192 1.2109 0.00059549 1.4791 0.00072741 491.77666730695034 64.111 0.10066 67.619 67.552 67.653 3.5083 11 8 2 0 0 0 0.12099 1 14393 14393 6.7232 0 1 43556 43536 1543 27567 27579 50083 50083 0.04675518491865205 TEVQLTEL 8 Unmodified _TEVQLTEL_ 0 0 0 ENSG00000171431|ENST00000167588|KRT20;CON__P35900 ENSG00000171431|ENST00000167588|KRT20 ENSG00000171431|ENST00000167588|KRT20 MULTI-MSMS UPN47_class_I_Rep_2 3 466.7501525878906 2 466.75039 931.486227 -0.045461 -2.1219E-05 -0.12826 -5.9867E-05 -0.17372 -8.1086E-05 466.75030957478714 66.425 0.52681 69.684 69.404 69.931 3.2588 43 34 2 0 0 0 0.82752 1 15950 15950 14.838 0 1 94318 + 43537 639 27568 27580 50084 50084 0.017743550780778605 TEVQLTEL 8 Unmodified _TEVQLTEL_ 0 0 0 ENSG00000171431|ENST00000167588|KRT20;CON__P35900 ENSG00000171431|ENST00000167588|KRT20 ENSG00000171431|ENST00000167588|KRT20 MULTI-MATCH UPN47_class_I_Rep_1 2 2 466.75039 931.486227 0.063028 2.9419E-05 -0.33894 -0.0001582 -0.27591 -0.00012878 466.750158280724 66.078 0.62036 69.436 69.208 69.828 3.3576 -0.12179 -0.00013112 NaN 14.838 66 42 2 NaN NaN NaN NaN 0 NaN NaN 0 84839 + 43538 639 27568 27580 0.017743550780778605 TEVTGHRW 8 Unmodified _TEVTGHRW_ 0 0 0 ENST00000576925.3_1_19:572634-579657:+|nuORF;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG ENST00000576925.3_1_19:572634-579657:+|nuORF ENST00000576925.3_1_19:572634-579657:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.24578857421875 2 493.246141 984.477728 -0.32392 -0.00015977 0.13448 6.6329E-05 -0.18944 -9.3442E-05 493.2461427422157 21.507 0.84847 25.182 24.832 25.68 3.6749 127 88 2 0 0 0 0.82752 6 2392 2293;2326;2358;2392;2430;2466 34.402 20.496 1 105240 43539 4568 27569 27581 50085;50086;50087;50088;50089;50090 50088 -0.015131540478705574 TEVTGHRW 8 Unmodified _TEVTGHRW_ 0 0 0 ENST00000576925.3_1_19:572634-579657:+|nuORF;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG ENST00000576925.3_1_19:572634-579657:+|nuORF ENST00000576925.3_1_19:572634-579657:+|nuORF MSMS UPN47_class_I_Rep_1 2 493.2463684082031 2 493.246141 984.477728 NaN NaN NaN NaN NaN NaN NaN 22.066 1 25.74 25.24 26.24 3.6749 0 0 0 0.40292 1 2501 2501 6.7232 0.96273 1 43540 4568 27569 27581 50091 50091 -0.015131540478705574 TEVTGHRW 8 Unmodified _TEVTGHRW_ 0 0 0 ENST00000576925.3_1_19:572634-579657:+|nuORF;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG ENST00000576925.3_1_19:572634-579657:+|nuORF ENST00000576925.3_1_19:572634-579657:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.24560546875 2 493.246141 984.477728 -0.11815 -5.8275E-05 -0.06874 -3.3906E-05 -0.18689 -9.2181E-05 493.2460201169832 21.827 0.73809 25.251 25.009 25.747 3.4241 123 78 2 0 0 0 0.82752 5 2500 2464;2500;2534;2567;2609 18.146 7.9102 1 73217 43541 4568 27569 27581 50092;50093;50094;50095;50096 50093 -0.015131540478705574 TEVTGHRW 8 Unmodified _TEVTGHRW_ 0 0 0 ENST00000576925.3_1_19:572634-579657:+|nuORF;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG ENST00000576925.3_1_19:572634-579657:+|nuORF ENST00000576925.3_1_19:572634-579657:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.24578857421875 2 493.246141 984.477728 -0.53839 -0.00026556 0.12614 6.2218E-05 -0.41225 -0.00020334 493.2461292535819 22.06 0.82432 25.41 25.14 25.964 3.3496 84 73 2 0 0 0 0.82752 2 2572 2572;2640 6.7232 2.3939 1 54139 43542 4568 27569 27581 50097;50098 50097 -0.015131540478705574 TEWCLFVWF 9 Unmodified _TEWCLFVWF_ 0 0 0 REV__L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|234|3|anti-sense REV__L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|234|3|anti-sense MSMS UPN48_class_I_Rep_3 7 615.725341796875 2 615.786253 1229.55795 NaN NaN NaN NaN NaN NaN NaN 20.894 1 24.56 24.06 25.06 3.6667 0 0 0 0.40038 1 1870 1870 0.6015 0 1 + 43543 25315 27570 27582 50099 50099 -0.04764428769044571 TEWDLYVP 8 Unmodified _TEWDLYVP_ 0 0 0 REV__L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|8|1|sense REV__L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 511.74481201171875 2 511.745108 1021.47566 NaN NaN NaN NaN NaN NaN NaN 67.036 1 70.397 69.897 70.897 3.3611 0 0 0 0.40738 1 16096 16096 0.79363 0 1 + 43544 30050 27571 27583 50100 50100 -0.03421627576335595 TEWLSEMFR 9 Unmodified _TEWLSEMFR_ 0 0 0 REV__ENST00000357365.7_2_9:139301607-139301661:-|nuORF REV__ENST00000357365.7_2_9:139301607-139301661:-|nuORF MSMS UPN48_class_I_Rep_1 5 599.7813720703125 2 599.781699 1197.54884 NaN NaN NaN NaN NaN NaN NaN 23.626 1 27.192 26.692 27.692 3.5655 0 0 0 0.39598 1 2492 2492 1.6526 0.17072 1 + 43545 21876 27572 27584 50101 50101 -0.0420282212537586 TEYNITVLL 9 Unmodified _TEYNITVLL_ 0 0 0 nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14 nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 MULTI-MSMS UPN47_class_I_Rep_3 4 533.2949829101562 2 533.294965 1064.57538 0.40996 0.00021863 -0.035185 -1.8764E-05 0.37478 0.00019987 533.2947946972206 71.512 1.2573 74.73 74.381 75.638 3.2188 231 106 4 0 0 0 0.15122 1 17459 17459 25.399 0 1 1017600 43546 2320 27573 27585 50102 50102 0.04567190037596447 TFAEPKILL 9 Unmodified _TFAEPKILL_ 0 0 0 L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|63|3|sense L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|63|3|sense L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|63|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 515.7736206054688 2 516.310418 1030.60628 0.15965 8.2426E-05 -0.29238 -0.00015096 -0.13274 -6.8533E-05 516.3102800497969 57.811 0.45425 61.102 60.942 61.396 3.2912 63 37 2 0 0 0 0.12026 1 13371 13371 8.1555 0.8663 1 125860 43547 8806 27574 27586 50103 50103 0.0922038814253483 TFAIDHDIY 9 Unmodified _TFAIDHDIY_ 0 0 0 REV__nc|ENSG00000115705|P07202-6|TPO REV__nc|ENSG00000115705|P07202-6|TPO MULTI-MSMS UPN47_class_I_Rep_1 2 547.7714233398438 2 547.761289 1093.50803 0.39809 0.00021806 -0.061585 -3.3734E-05 0.3365 0.00018432 547.7612080202797 56.132 0.85475 59.611 59.294 60.149 3.4785 111 48 3 0 0 0 0.45688 1 12946 12946 4.756 0 1 313220 + 43548 18577 27575 27587 50104 50104 -0.034988401733244245 TFALSHRFWC 10 Unmodified _TFALSHRFWC_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|175|1|anti-sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|175|1|anti-sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|175|1|anti-sense MSMS UPN47_class_I_Rep_3 4 634.3080444335938 2 634.305675 1266.5968 NaN NaN NaN NaN NaN NaN NaN 51.764 1 54.97 54.47 55.47 3.2055 0 0 0 0.53105 1 11547 11547 1.6526 0.17072 1 43549 9692 27576 27588 50105 50105 -0.025837034146661608 TFCLRLSRY 9 Unmodified _TFCLRLSRY_ 0 0 0 REV__L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|51|3|anti-sense REV__L1MDa_dup5228|chr13:20017342-20018192:-|1.3665705681228206|0.0321991229888551|5.41|151.0|51|3|anti-sense MSMS UPN47_class_I_Rep_3 4 579.8071899414062 2 579.808051 1157.60155 NaN NaN NaN NaN NaN NaN NaN 68.368 1 71.566 71.066 72.066 3.1977 0 0 0 0.36505 1 16608 16608 7.2892 0.56607 1 + 43550 27535 27577 27589 50106 50106 0.029051807281121 TFCQQSFV 8 Unmodified _TFCQQSFV_ 0 0 0 REV__L1ME2_dup10684|chr15:85110335-85112117:-|1.0162572148704598|0.2017545716965045|2.33|151.0|93|1|anti-sense REV__L1ME2_dup10684|chr15:85110335-85112117:-|1.0162572148704598|0.2017545716965045|2.33|151.0|93|1|anti-sense MSMS UPN47_class_I_Rep_3 4 480.23260498046875 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 23.45 1 26.8 26.3 27.3 3.3503 0 0 0 0.40404 1 2984 2984 5.2307 0.90143 1 + 43551 27815 27578 27590 50107 50107 -0.05902123279690841 TFDVIIDMLM 10 Unmodified _TFDVIIDMLM_ 0 0 0 L1MB3_dup12141|chr12:120875648-120875993:+|1.297078976119094|0.0043249217776339|8.23|151.0|24|3|anti-sense L1MB3_dup12141|chr12:120875648-120875993:+|1.297078976119094|0.0043249217776339|8.23|151.0|24|3|anti-sense L1MB3_dup12141|chr12:120875648-120875993:+|1.297078976119094|0.0043249217776339|8.23|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_3 7 599.298828125 2 599.298336 1196.58212 NaN NaN NaN NaN NaN NaN NaN 83.013 1 86.72 86.22 87.22 3.7066 0 0 0 0.53105 1 19678 19678 6.2058 2.2614 1 43552 10328 27579 27591 50108 50108 -0.008309563976808931 TFEFVISSFG 10 Unmodified _TFEFVISSFG_ 0 0 0 REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|181|2|anti-sense REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|181|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.7809448242188 2 567.279315 1132.54408 0.39108 0.00022185 -0.096473 -5.4727E-05 0.2946 0.00016712 567.2792189333798 77.141 0.61918 80.556 80.252 80.871 3.4149 90 54 2 0 0 0 0.52083 3 19083 19064;19083;19160 9.3831 0 1 169710 + 43553 28102 27580 27592 50109;50110;50111 50110 -0.01689382996482891 TFEFVISSFG 10 Unmodified _TFEFVISSFG_ 0 0 0 REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|181|2|anti-sense REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|181|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.2793579101562 2 567.279315 1132.54408 0.47555 0.00026977 -0.20444 -0.00011597 0.27111 0.00015379 567.2791262082409 77.251 0.64285 80.583 80.284 80.927 3.3315 118 65 2 0 0 0 0.47413 2 19160 19124;19160 13.906 0 1 145430 + 43554 28102 27580 27592 50112;50113 50113 -0.01689382996482891 TFEIIVHQY 9 Unmodified _TFEIIVHQY_ 0 0 0 ENST00000474368.1_1_21:42773880-42775423:+|nuORF;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2 ENST00000474368.1_1_21:42773880-42775423:+|nuORF ENST00000474368.1_1_21:42773880-42775423:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 575.3016357421875 2 575.300581 1148.58661 0.4235 0.00024364 0.08281 4.7641E-05 0.50631 0.00029128 575.3006098294319 62.763 0.36993 62.763 62.607 62.977 0 45 34 2 0 0 0 0.043452 2 14064 14064;14096 51.63 27.609 1 116390 43555 5000 27581 27593 50114;50115 50114 0.018260121317553057 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 508.2984619140625 2 507.797143 1013.57973 0.23264 0.00011813 -0.30898 -0.0001569 -0.076344 -3.8767E-05 507.7969944014801 85.458 0.18435 89.064 88.953 89.137 3.6059 27 18 2 0 0 0 0.33654 1 20432 20432 11.64 0 1 101080 + 43556 19217 27582 27594 50116 50116 0.07348699251178914 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 507.7968444824219 2 507.797143 1013.57973 0.31045 0.00015765 -0.14985 -7.6092E-05 0.16061 8.1555E-05 507.79700056896644 85.425 0.29674 89.131 88.924 89.22 3.7058 53 38 3 0 0 0 0.33654 1 20324 20324 11.64 0 1 135590 + 43557 19217 27582 27594 50117 50117 0.07348699251178914 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 507.7972412109375 2 507.797143 1013.57973 0.31045 0.00015765 -0.14985 -7.6092E-05 0.16061 8.1555E-05 507.79700056896644 85.425 0.29674 89.131 88.924 89.22 3.7058 53 38 3 0 0 0 0.12281 1 20293 20293 4.3292 0 1 135590 + 43558 19217 27582 27594 50118 50118 0.07348699251178914 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 507.2655944824219 2 507.797143 1013.57973 0.31009 0.00015746 -0.036922 -1.8749E-05 0.27317 0.00013872 507.79701783064365 85.574 0.18607 89.28 89.22 89.406 3.7058 32 21 2 0 0 0 0.11598 1 20380 20380 11.64 0 1 122980 + 43559 19217 27582 27594 50119 50119 0.07348699251178914 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 507.7967529296875 2 507.797143 1013.57973 0.29781 0.00015122 -0.19942 -0.00010126 0.098389 4.9962E-05 507.7970435028699 85.366 0.35457 89.115 89.047 89.402 3.7494 58 42 2 0 0 0 0.33654 1 20241 20241 11.64 0 1 114860 + 43560 19217 27582 27594 50120 50120 0.07348699251178914 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 507.797143 1013.57973 0.23264 0.00011813 -0.30898 -0.0001569 -0.076344 -3.8767E-05 507.7969944014801 85.458 0.18435 89.064 88.953 89.137 3.6059 0.0024395 -8.9638E-05 NaN 11.64 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 101080 + 43561 19217 27582 27594 0.07348699251178914 TFELPVPVL 9 Unmodified _TFELPVPVL_ 0 0 0 REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron REV__ENSG00000137161.17,CNPY3,chr6,+,I1.1,42929722,42934474|42|15.08|1|intron MULTI-MATCH UPN48_class_I_Rep_3 7 2 507.797143 1013.57973 0.29834 0.00015149 -0.41526 -0.00021087 -0.11692 -5.9373E-05 507.79705066801574 85.24 0.073921 88.989 88.955 89.029 3.7494 -0.072028 -0.00019757 NaN 11.64 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 81354 + 43562 19217 27582 27594 0.07348699251178914 TFEQTLLK 8 Unmodified _TFEQTLLK_ 0 0 0 L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|110|2|anti-sense L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|110|2|anti-sense L1PREC2_dup5650|chr11:76100627-76102810:-|1.8342958169262715|0.0537411068367091|5.09|151.0|110|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.73577880859375 2 490.276575 978.538597 -0.26733 -0.00013106 1.9344 0.0009484 1.6671 0.00081734 490.27663737337537 38.573 0.073318 42.238 42.192 42.266 3.6652 6 5 2 0 0 0 0.82752 1 7435 7435 0.69038 0 1 26258 43563 15468 27583 27595 50121 50121 0.04846938211721863 TFERPKQKQS 10 Unmodified _TFERPKQKQS_ 0 0 0 REV__L1ME3F_dup2054|chr7:92705095-92705251:-|1.2891642470963622|0.0034524957118204|8.54|151.0|1|1|sense REV__L1ME3F_dup2054|chr7:92705095-92705251:-|1.2891642470963622|0.0034524957118204|8.54|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 625.3401489257812 2 624.838394 1247.66223 0.048301 3.018E-05 -0.39424 -0.00024634 -0.34594 -0.00021616 624.8380814768016 12.992 0.37391 16.38 16.28 16.654 3.388 88 35 4 0 0 0 0.56118 1 196 196 2.9952 0.26005 1 294180 + 43564 28172 27584 27596 50122 50122 0.04830989312040401 TFESDDCCCDC 11 Unmodified _TFESDDCCCDC_ 0 0 0 REV__L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense REV__L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense MSMS UPN47_class_I_Rep_1 2 620.6669921875 2 620.666699 1239.31885 NaN NaN NaN NaN NaN NaN NaN 118.93 1 122.53 122.03 123.03 3.6036 0 0 0 0.38417 1 29532 29532 0 0 1 + 43565 28709 27585 27597 50123 50123 -0.2912410790713693 TFESDDCCCDC 11 Unmodified _TFESDDCCCDC_ 0 0 0 REV__L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense REV__L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense MSMS UPN47_class_I_Rep_1 2 620.667236328125 2 620.666699 1239.31885 NaN NaN NaN NaN NaN NaN NaN 119.58 1 123.18 122.68 123.68 3.6036 0 0 0 0.38417 1 29719 29719 0 0 1 + 43566 28709 27585 27597 50124 50124 -0.2912410790713693 TFFHLSLQD 9 Unmodified _TFFHLSLQD_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MSMS UPN47_class_I_Rep_2 3 554.2996215820312 2 554.277106 1106.53966 NaN NaN NaN NaN NaN NaN NaN 48.14 1 51.489 50.989 51.989 3.3492 0 0 0 0.39518 1 10381 10381 1.8442 0.36234 1 43567 4523 27586 27598 50125 50125 -0.009348474193984657 TFFKIGVSLLK 11 Unmodified _TFFKIGVSLLK_ 0 0 0 Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|47|1|anti-sense Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|47|1|anti-sense Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|47|1|anti-sense MSMS UPN48_class_I_Rep_1 5 626.8895263671875 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 104.75 1 108.37 107.87 108.87 3.6247 0 0 0 0.38417 1 25238 25238 4.897 0 1 43568 32983 27587 27599 50126 50126 0.14328583539145257 TFFKIGVSLLK 11 Unmodified _TFFKIGVSLLK_ 0 0 0 Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|47|1|anti-sense Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|47|1|anti-sense Tigger1_dup10449|chr15:72096356-72097604:+|1.0893746535912394|0.0181583991060802|5.91|150.0|47|1|anti-sense MSMS UPN48_class_I_Rep_2 6 626.8888549804688 2 626.886824 1251.7591 NaN NaN NaN NaN NaN NaN NaN 105.07 1 108.76 108.26 109.26 3.6901 0 0 0 0.38417 1 24861 24861 4.897 0 1 43569 32983 27587 27599 50127 50127 0.14328583539145257 TFFLLRQQ 8 Unmodified _TFFLLRQQ_ 0 0 0 REV__L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense REV__L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_1 5 526.3610229492188 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 35.378 1 38.888 38.388 39.388 3.5101 0 0 0 0.40746 1 5779 5779 0.69038 0 1 + 43570 25060 27588 27600 50128 50128 0.05773753059793307 TFFWPLLQI 9 Unmodified _TFFWPLLQI_ 0 0 0 HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|28|2|sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|28|2|sense HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|28|2|sense MSMS UPN47_class_I_Rep_2 3 582.8280639648438 2 582.826235 1163.63792 NaN NaN NaN NaN NaN NaN NaN 30.914 1 34.396 33.896 34.896 3.4821 0 0 0 0.38784 1 5163 5163 3.5965 0.31518 1 43571 8300 27589 27601 50129 50129 0.06264380896459443 TFFYFYFT 8 Unmodified _TFFYFYFT_ 0 0 0 L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|36|1|anti-sense L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|36|1|anti-sense L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_1 5 568.2603149414062 2 568.260394 1134.50623 NaN NaN NaN NaN NaN NaN NaN 116.9 1 120.52 120.02 121.02 3.6254 0 0 0 0.40798 1 28479 28479 0 0 1 43572 8685 27590 27602 50130 50130 -0.05563849191321424 TFFYKLQL 8 Unmodified _TFFYKLQL_ 0 0 0 REV__ENST00000396387.2_1_22:42503789-42504386:-|nuORF REV__ENST00000396387.2_1_22:42503789-42504386:-|nuORF MSMS UPN48_class_I_Rep_1 5 530.2958374023438 2 530.29731 1058.58007 NaN NaN NaN NaN NaN NaN NaN 60.627 1 64.101 63.601 64.601 3.4737 0 0 0 0.39242 1 13427 13427 10.824 1.4408 1 + 43573 22122 27591 27603 50131 50131 0.053121189710282124 TFFYKLQL 8 Unmodified _TFFYKLQL_ 0 0 0 REV__ENST00000396387.2_1_22:42503789-42504386:-|nuORF REV__ENST00000396387.2_1_22:42503789-42504386:-|nuORF MSMS UPN48_class_I_Rep_2 6 530.2958374023438 2 530.29731 1058.58007 NaN NaN NaN NaN NaN NaN NaN 60.414 1 63.893 63.393 64.393 3.4785 0 0 0 0.37681 1 13340 13340 15.847 1.0089 1 + 43574 22122 27591 27603 50132 50132 0.053121189710282124 TFGEGLKEL 9 Unmodified _TFGEGLKEL_ 0 0 0 REV__ENST00000480745.5_1_20:43595209-43601992:+|nuORF REV__ENST00000480745.5_1_20:43595209-43601992:+|nuORF MSMS UPN48_class_I_Rep_2 6 497.26641845703125 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 47.028 1 50.778 50.278 51.278 3.7494 0 0 0 0.34878 1 9255 9255 8.1555 0 1 + 43575 22563 27592 27604 50133 50133 0.02130347832053303 TFGEGLLKE 9 Unmodified _TFGEGLLKE_ 0 0 0 CON__P06868 CON__P06868 CON__P06868 MSMS UPN48_class_I_Rep_1 5 497.265380859375 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 47.229 1 50.751 50.251 51.251 3.5219 0 0 0 0.39036 1 9310 9310 2.9952 0 1 + 43576 636 27593 27605 50134 50134 0.02130347832053303 TFGKKKGPNA 10 Unmodified _TFGKKKGPNA_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN47_class_I_Rep_1 2 524.30029296875 2 524.300916 1046.58728 -0.19712 -0.00010335 -0.70136 -0.00036773 -0.89849 -0.00047108 524.3003908950976 13.07 0.15553 16.527 16.445 16.6 3.457 21 12 2 0 0 0 0.54466 1 233 233 6.2058 6.2058 1 69663 43577 3553 27594 27606 50135 50135 0.06584851571483341 TFGKKKGPNA 10 Unmodified _TFGKKKGPNA_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN47_class_I_Rep_2 3 524.3001708984375 2 524.300916 1046.58728 -0.33368 -0.00017495 -0.33809 -0.00017726 -0.67177 -0.00035221 524.3005341669852 13.098 0.19145 16.486 16.407 16.599 3.388 26 16 2 0 0 0 0.54466 2 241 241;245 6.2058 3.5965 1 57705 43578 3553 27594 27606 50136;50137 50136 0.06584851571483341 TFGKKKGPNA 10 Unmodified _TFGKKKGPNA_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS UPN47_class_I_Rep_3 4 524.8023071289062 2 524.300916 1046.58728 -0.54225 -0.0002843 -0.15266 -8.0042E-05 -0.69491 -0.00036434 524.300675656786 13.138 0.16296 16.511 16.438 16.601 3.3734 28 15 3 0 0 0 0.56033 1 244 244 3.5965 3.5965 1 53568 43579 3553 27594 27606 50138 50138 0.06584851571483341 TFGYRRPYR 9 Unmodified _TFGYRRPYR_ 0 0 0 ENSG00000182950|ENST00000332145|ODF3L1 ENSG00000182950|ENST00000332145|ODF3L1 ENSG00000182950|ENST00000332145|ODF3L1 MULTI-MSMS UPN48_class_I_Rep_1 5 405.8843688964844 3 405.884235 1214.63087 -0.045149 -1.8325E-05 0.14919 6.0554E-05 0.10404 4.2229E-05 405.88419889470464 65.415 1.498 68.869 68.278 69.776 3.4541 181 108 3 0 0 0 0.49768 1 14965 14965 0.86438 0.86438 1 268920 43580 4977 27595 27607 50139 50139 0.03214461068591845 TFGYRRPYR 9 Unmodified _TFGYRRPYR_ 0 0 0 ENSG00000182950|ENST00000332145|ODF3L1 ENSG00000182950|ENST00000332145|ODF3L1 ENSG00000182950|ENST00000332145|ODF3L1 MULTI-MSMS UPN48_class_I_Rep_3 7 405.884033203125 3 405.884235 1214.63087 0.13183 5.3506E-05 -0.16503 -6.6982E-05 -0.033201 -1.3476E-05 405.88408344189094 65.466 1.5201 68.973 68.018 69.539 3.5077 169 110 3 0 0 0 0.49768 1 14872 14872 0.86438 0.087843 1 209980 43581 4977 27595 27607 50140 50140 0.03214461068591845 TFHCVRVVY 9 Unmodified _TFHCVRVVY_ 0 0 0 Tigger3a_dup1536|chr4:139156972-139157328:-|1.3612720815347528|0.0084888527888429|7.33|150.0|15|3|sense Tigger3a_dup1536|chr4:139156972-139157328:-|1.3612720815347528|0.0084888527888429|7.33|150.0|15|3|sense Tigger3a_dup1536|chr4:139156972-139157328:-|1.3612720815347528|0.0084888527888429|7.33|150.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.289494 1122.56443 NaN NaN NaN NaN NaN NaN NaN 37.2 1 37.2 36.7 37.7 0 0 0 0 0.38639 1 6970 6970 3.9444 0 1 43582 33355 27596 27608 50141 50141 0.00805509182350761 TFHPASTPV 9 Unmodified _TFHPASTPV_ 0 0 0 REV__MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|6|1|sense REV__MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|6|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 478.8288269042969 2 478.745442 955.476331 0.11014 5.2728E-05 0.041936 2.0077E-05 0.15207 7.2805E-05 478.74540018999033 49.537 0.55316 53.062 52.858 53.411 3.5246 46 32 2 0 0 0 0.10341 1 10008 10008 16.942 2.104 1 85602 + 43583 31763 27597 27609 50142 50142 -0.003187881366216061 TFHRTLGF 8 Unmodified _TFHRTLGF_ 0 0 0 MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|93|3|anti-sense MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|93|3|anti-sense MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 489.76116943359375 2 489.761426 977.5083 0.17204 8.4259E-05 0.017625 8.6321E-06 0.18967 9.2891E-05 489.76128499844395 41.355 0.98618 44.861 44.353 45.339 3.506 211 92 3 0 0 0 0.82752 1 7615 7615 32.305 0 1 526670 43584 16577 27598 27610 50143 50143 0.018646243371904347 TFHRTLGF 8 Unmodified _TFHRTLGF_ 0 0 0 MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|93|3|anti-sense MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|93|3|anti-sense MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|93|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.76123046875 2 489.761426 977.5083 0.15356 7.5208E-05 0.01679 8.2232E-06 0.17035 8.3431E-05 489.761301116491 41.051 1.1191 44.697 44.194 45.313 3.6458 267 111 3 0 0 0 0.82752 1 7504 7504 21.747 0 1 605970 43585 16577 27598 27610 50144 50144 0.018646243371904347 TFIAISTYI 9 Unmodified _TFIAISTYI_ 0 0 0 L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|144|3|sense L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|144|3|sense L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|144|3|sense MSMS UPN47_class_I_Rep_2 3 514.7879638671875 2 514.786776 1027.559 NaN NaN NaN NaN NaN NaN NaN 62.633 1 65.889 65.389 66.389 3.2558 0 0 0 0.29868 1 14804 14804 10.824 0 1 43586 9509 27599 27611 50145 50145 0.04632108871487617 TFIENFRMD 9 Unmodified _TFIENFRMD_ 0 0 0 REV__nc|ENSG00000066135|O75164-2|KDM4A REV__nc|ENSG00000066135|O75164-2|KDM4A MSMS UPN48_class_I_Rep_3 7 586.771240234375 2 586.773874 1171.53319 NaN NaN NaN NaN NaN NaN NaN 29.863 1 33.592 33.092 34.092 3.7286 0 0 0 0.39518 1 4238 4238 1.8442 0.36234 1 + 43587 17763 27600 27612 50146 50146 -0.04571108642426225 TFIFTMIWI 9 Unmodified _TFIFTMIWI_ 0 0 0 REV__ENSG00000091138|ENST00000340010|SLC26A3 REV__ENSG00000091138|ENST00000340010|SLC26A3 MSMS UPN46_class_I_Rep_3 1 586.3147583007812 2 586.314646 1170.61474 NaN NaN NaN NaN NaN NaN NaN 58.569 1 58.569 58.069 59.069 0 0 0 0 0.39428 1 12899 12899 2.0598 0 1 + 43588 18016 27601 27613 50147 50147 0.03625618787486928 TFIPFHKFY 9 Unmodified _TFIPFHKFY_ 0 0 0 REV__L1ME4c_dup1621|chr3:48935273-48935448:-|1.0509220512475597|0.4327033889833682|1.28|151.0|8|1|anti-sense REV__L1ME4c_dup1621|chr3:48935273-48935448:-|1.0509220512475597|0.4327033889833682|1.28|151.0|8|1|anti-sense MSMS UPN47_class_I_Rep_3 4 600.7728881835938 2 600.316035 1198.61752 NaN NaN NaN NaN NaN NaN NaN 59.265 1 62.43 61.93 62.93 3.1651 0 0 0 0.38478 1 13834 13834 4.3292 0.73274 1 + 43589 28314 27602 27614 50148 50148 0.026152102366495455 TFISDTMGKK 10 Unmodified _TFISDTMGKK_ 0 0 0 Tigger9b_dup108|chr2:241330181-241330735:-|3.3296456676813846|0.3471024962522732|3.26|151.0|22|2|anti-sense Tigger9b_dup108|chr2:241330181-241330735:-|3.3296456676813846|0.3471024962522732|3.26|151.0|22|2|anti-sense Tigger9b_dup108|chr2:241330181-241330735:-|3.3296456676813846|0.3471024962522732|3.26|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2916870117188 2 564.291899 1126.56925 NaN NaN NaN NaN NaN NaN NaN 24.558 1 28.327 27.827 28.827 3.769 0 0 0 0.53105 1 2861 2861 3.5965 1.2938 1 43590 33464 27603 27615 50149 50149 0.011023485344594519 TFISQVQAIL 10 Unmodified _TFISQVQAIL_ 0 0 0 AluSq_dup16880|chr19:4913253-4913554:-|1.638187561345075|0.0630404058139418|4.7|151.0|14|1|anti-sense AluSq_dup16880|chr19:4913253-4913554:-|1.638187561345075|0.0630404058139418|4.7|151.0|14|1|anti-sense AluSq_dup16880|chr19:4913253-4913554:-|1.638187561345075|0.0630404058139418|4.7|151.0|14|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3236694335938 2 560.324057 1118.63356 0.47816 0.00026792 -0.085111 -4.769E-05 0.39305 0.00022023 560.3239979094155 70.079 0.6118 73.592 73.257 73.869 3.5128 78 50 2 0 0 0 0.53004 1 16196 16196 8.1555 0.54658 1 294850 43591 242 27604 27616 50150 50150 0.07898871682914432 TFIVKTLVQAQ 11 Unmodified _TFIVKTLVQAQ_ 0 0 0 ENSG00000112486|ENST00000341935|CCR6 ENSG00000112486|ENST00000341935|CCR6 ENSG00000112486|ENST00000341935|CCR6 MULTI-MSMS UPN48_class_I_Rep_3 7 624.3740844726562 2 624.371538 1246.72852 0.60343 0.00037676 0.24612 0.00015367 0.84955 0.00053043 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.67519 1 21859 21859 0.96228 0 1 1749400 43592 2013 27605 27617 50151 50151 0.11502805154077578 TFIWNKWY 8 Unmodified _TFIWNKWY_ 0 0 0 REV__L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|20|3|sense REV__L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|20|3|sense MSMS UPN48_class_I_Rep_1 5 579.2939453125 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 54.251 1 57.766 57.266 58.266 3.5143 0 0 0 0.40625 1 11468 11468 2.3027 0.24298 1 + 43593 24433 27606 27618 50152 50152 -0.0014564931448148855 TFKIGVSPV 9 Unmodified _TFKIGVSPV_ 0 0 0 Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|69|2|anti-sense Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|69|2|anti-sense Tigger1_dup2010|chr3:3164460-3165771:+|1.007011034603137|0.2249053744231891|2.16|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_1 2 474.28253173828125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.97 1 113.57 113.07 114.07 3.6024 0 0 0 0.38478 1 27127 27127 4.3292 0 1 43594 33044 27607 27619 50153 50153 0.07335545936950894 TFKIHLARLN 10 Unmodified _TFKIHLARLN_ 0 0 0 REV__ENSG00000136802|ENST00000372600|LRRC8A REV__ENSG00000136802|ENST00000372600|LRRC8A MSMS UPN47_class_I_Rep_2 3 606.863037109375 2 606.864215 1211.71388 NaN NaN NaN NaN NaN NaN NaN 109.95 1 113.48 112.98 113.98 3.5307 0 0 0 0.53105 1 26786 26786 2.9952 0.49676 1 + 43595 19200 27608 27620 50154 50154 0.11648777796608556 TFKKMWHRL 9 Unmodified _TFKKMWHRL_ 0 0 0 REV__ENST00000361060.5_1_2:69590775-69601149:-|nuORF REV__ENST00000361060.5_1_2:69590775-69601149:-|nuORF MSMS UPN46_class_I_Rep_3 1 623.84912109375 2 623.84751 1245.68047 NaN NaN NaN NaN NaN NaN NaN 50.09 1 50.09 49.59 50.59 0 0 0 0 0.40038 1 10568 10568 0.6015 0 1 + 43596 21900 27609 27621 50155 50155 0.0674545275305718 TFKLYHEI 8 Unmodified _TFKLYHEI_ 0 0 0 Tigger1_dup1981|chr2:232823788-232825718:+|2.02757846692826|0.0849822703391717|4.58|150.0|85|2|anti-sense Tigger1_dup1981|chr2:232823788-232825718:+|2.02757846692826|0.0849822703391717|4.58|150.0|85|2|anti-sense Tigger1_dup1981|chr2:232823788-232825718:+|2.02757846692826|0.0849822703391717|4.58|150.0|85|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 525.784912109375 2 525.784567 1049.55458 0.32819 0.00017256 -0.054012 -2.8399E-05 0.27418 0.00014416 525.7845100549092 51.031 0.65916 54.641 54.379 55.038 3.6105 57 43 2 0 0 0 0.82752 1 10397 10397 15.847 0 1 150210 43597 33042 27610 27622 50156 50156 0.031786444485987886 TFKQFCLCLF 10 Unmodified _TFKQFCLCLF_ 0 0 0 REV__L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|132|3|anti-sense REV__L1MD2_dup10231|chr20:8172663-8174766:+|4.643977977906673|0.0326806900318589|7.15|151.0|132|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 624.8071899414062 2 625.309038 1248.60352 0.57797 0.00036141 -0.65814 -0.00041154 -0.080171 -5.0131E-05 625.3085963648955 62.201 0.14599 65.669 65.577 65.723 3.4678 25 13 2 0 0 0 0.84575 1 13906 13906 1.6526 0.17072 1 81615 + 43598 27382 27611 27623 50157 50157 -0.010835265783271097 TFKRIFYF 8 Unmodified _TFKRIFYF_ 0 0 0 REV__ENST00000591790.5_1_19:56953420-56953624:-|nuORF REV__ENST00000591790.5_1_19:56953420-56953624:-|nuORF MSMS UPN48_class_I_Rep_2 6 561.311279296875 2 561.310752 1120.60695 NaN NaN NaN NaN NaN NaN NaN 35.814 1 39.502 39.002 40.002 3.6877 0 0 0 0.40746 1 5952 5952 0.69038 0 1 + 43599 23172 27612 27624 50158 50158 0.051472275822106894 TFLAATFMQMC 11 Unmodified _TFLAATFMQMC_ 0 0 0 REV__L1PREC2_dup3550|chr7:129038317-129038977:+|1.3103108513764412|0.0241296795084376|5.76|151.0|2|1|sense REV__L1PREC2_dup3550|chr7:129038317-129038977:+|1.3103108513764412|0.0241296795084376|5.76|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 421.8588562011719 3 421.857201 1262.54977 NaN NaN NaN NaN NaN NaN NaN 89.82 1 89.82 89.32 90.32 0 0 0 0 0.38417 1 21629 21629 0.40827 0 1 + 43600 30703 27613 27625 50159 50159 -0.07100067072337879 TFLAQITR 8 Unmodified _TFLAQITR_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|297|2|anti-sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|297|2|anti-sense MSMS UPN47_class_I_Rep_2 3 475.2603454589844 2 475.276909 948.539266 NaN NaN NaN NaN NaN NaN NaN 41.135 1 44.501 44.001 45.001 3.3655 0 0 0 0.40292 1 8260 8260 6.7232 0 1 + 43601 23312 27614 27626 50160 50160 0.06293777651410437 TFLFKRGL 8 Unmodified _TFLFKRGL_ 0 0 0 REV__L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|8|1|sense REV__L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 491.2991943359375 2 491.297645 980.580737 NaN NaN NaN NaN NaN NaN NaN 117.5 1 121.11 120.61 121.61 3.6124 0 0 0 0.40746 1 27950 27950 0.69038 0 1 + 43602 26688 27615 27627 50161 50161 0.08966958410769621 TFLGKRVE 8 Unmodified _TFLGKRVE_ 0 0 0 nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A MSMS UPN47_class_I_Rep_1 2 475.26007080078125 2 475.276909 948.539266 NaN NaN NaN NaN NaN NaN NaN 38.739 1 42.404 41.904 42.904 3.6652 0 0 0 0.40157 1 7499 7499 7.2892 0.56607 1 43603 3229 27616 27628 50162 50162 0.06293777651421806 TFLGKRVE 8 Unmodified _TFLGKRVE_ 0 0 0 nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A MULTI-MSMS UPN47_class_I_Rep_2 3 475.2603454589844 2 475.276909 948.539266 -0.27844 -0.00013234 0.34915 0.00016594 0.070705 3.3604E-05 475.27661486926473 39.356 0.63668 42.735 42.359 42.996 3.3785 45 34 2 0 0 0 0.82752 1 7623 7623 3.9444 0.66309 1 58483 43604 3229 27616 27628 50163 50163 0.06293777651421806 TFLHPLNT 8 Unmodified _TFLHPLNT_ 0 0 0 L1ME3G_dup8112|chr9:294029-294440:-|1.7004397454453428|0.0143946486800983|6.88|151.0|7|2|sense L1ME3G_dup8112|chr9:294029-294440:-|1.7004397454453428|0.0143946486800983|6.88|151.0|7|2|sense L1ME3G_dup8112|chr9:294029-294440:-|1.7004397454453428|0.0143946486800983|6.88|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 471.7557678222656 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 44.794 1 48.556 48.056 49.056 3.7617 0 0 0 0.39996 1 8578 8578 7.9102 0 1 43605 12849 27617 27629 50164 50164 0.023978022430469537 TFLPMPSFLVP 11 Unmodified _TFLPMPSFLVP_ 0 0 0 REV__L1MC5_dup12422|chr15:58909001-58910274:+|4.679305470743143|0.147960255515475|4.98|151.0|50|1|anti-sense REV__L1MC5_dup12422|chr15:58909001-58910274:+|4.679305470743143|0.147960255515475|4.98|151.0|50|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 624.8374633789062 2 624.838485 1247.66242 -0.074558 -4.6587E-05 -0.4942 -0.00030879 -0.56876 -0.00035538 624.8381087533221 12.947 0.4553 16.396 16.288 16.743 3.45 75 41 4 0 0 0 0.67113 1 229 229 1.3295 0 1 254320 + 43606 27059 27618 27630 50165 50165 0.04849272987689801 TFLRAAISA 9 Unmodified _TFLRAAISA_ 0 0 0 Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|50|1|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|50|1|anti-sense Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_3 4 475.259765625 2 475.276909 948.539266 NaN NaN NaN NaN NaN NaN NaN 34.398 1 37.662 37.162 38.162 3.2639 0 0 0 0.096434 1 6250 6250 25.399 3.8623 1 43607 33443 27619 27631 50166 50166 0.06293777651410437 TFLRFRRRI 9 Unmodified _TFLRFRRRI_ 0 0 0 REV__L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|330|3|anti-sense REV__L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|330|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 632.3621826171875 2 632.891098 1263.76764 0.71813 0.0004545 0.56831 0.00035968 1.2864 0.00081417 632.8918584796828 102.89 0.17386 102.89 102.84 103.01 0 19 14 2 0 0 0 0.12532 1 25108 25108 0.52476 0 1 943130 + 43608 29642 27620 27632 50167 50167 0.14630995018978865 TFPFKREK 8 Unmodified _TFPFKREK_ 0 0 0 MSTB-int_dup429|chr8:58647863-58649499:+|1.057345632148225|0.0119574043356288|6.47|151.0|79|3|anti-sense MSTB-int_dup429|chr8:58647863-58649499:+|1.057345632148225|0.0119574043356288|6.47|151.0|79|3|anti-sense MSTB-int_dup429|chr8:58647863-58649499:+|1.057345632148225|0.0119574043356288|6.47|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7964477539062 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 16.874 1 20.261 19.761 20.761 3.3864 0 0 0 0.40746 1 1156 1156 0.69038 0 1 43609 16575 27621 27633 50168 50168 0.05773753059793307 TFPLRWPL 8 Unmodified _TFPLRWPL_ 0 0 0 REV__HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|59|1|anti-sense REV__HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_1 2 515.306396484375 2 515.297645 1028.58074 NaN NaN NaN NaN NaN NaN NaN 14.292 1 17.767 17.267 18.267 3.475 0 0 0 0.4044 1 534 534 4.756 1.4747 1 + 43610 23330 27622 27634 50169 50169 0.06758958410750893 TFQLPLPE 8 Unmodified _TFQLPLPE_ 0 0 0 ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ENSG00000196214|ENST00000439461|ZNF766 ENST00000599581.5_1_19:52786637-52794448:+|nuORF ENST00000599581.5_1_19:52786637-52794448:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 472.27630615234375 2 472.758018 943.501483 -0.2119 -0.00010018 -2.133 -0.0010084 -2.3449 -0.0011085 472.75714337248195 43.71 0.17017 47.405 47.326 47.496 3.6951 14 10 2 0 0 0 0.72333 1 9042 9042 4.756 2.1785 1 31767 43611 5288 27623 27635 50170 50170 0.027472666659605238 TFQQPPKP 8 Unmodified _TFQQPPKP_ 0 0 0 ENST00000467731.1_1_21:33069046-33074115:-|nuORF;ENST00000485790.1_1_21:33073145-33104086:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4 ENST00000467731.1_1_21:33069046-33074115:-|nuORF ENST00000467731.1_1_21:33069046-33074115:-|nuORF MSMS UPN48_class_I_Rep_2 6 471.294189453125 2 471.75581 941.497067 NaN NaN NaN NaN NaN NaN NaN 44.743 1 48.505 48.005 49.005 3.7617 0 0 0 0.40404 1 8562 8562 5.2307 0.47466 1 43612 3729 27624 27636 50171 50171 0.02397802243035585 TFRFSLIN 8 Unmodified _TFRFSLIN_ 0 0 0 REV__L1MC1_dup537|chr1:116524557-116525775:-|2.892132818133577|0.3431257061067765|3.08|151.0|55|2|anti-sense REV__L1MC1_dup537|chr1:116524557-116525775:-|2.892132818133577|0.3431257061067765|3.08|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_3 7 499.2765808105469 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.515 1 57.099 56.599 57.599 3.5836 0 0 0 0.38112 1 11162 11162 14.838 0 1 + 43613 26576 27625 27637 50172 50172 0.04085777651425815 TFRKECVDC 9 Unmodified _TFRKECVDC_ 0 0 0 REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A MSMS UPN47_class_I_Rep_2 3 550.747802734375 2 550.746802 1099.47905 NaN NaN NaN NaN NaN NaN NaN 54.67 1 57.988 57.488 58.488 3.3187 0 0 0 0.39598 1 12378 12378 1.6526 0 1 + 43614 18988 27626 27638 50173 50173 -0.06671024065644815 TFRLFLYLDYL 11 Unmodified _TFRLFLYLDYL_ 0 0 0 L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|88|3|anti-sense L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|88|3|anti-sense L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|88|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 488.6034240722656 3 488.602622 1462.78604 0.25818 0.00012615 2.2188 0.0010841 2.4769 0.0012102 488.9382329221292 110.58 0.098045 114.25 114.21 114.31 3.669 13 13 2 0 0 0 0.68024 1 26312 26312 0.50596 0 1 82090 43615 10108 27627 27639 50174 50174 0.07315647359632749 TFRLFLYLDYL 11 Unmodified _TFRLFLYLDYL_ 0 0 0 L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|88|3|anti-sense L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|88|3|anti-sense L1MA9_dup13681|chr14:88401863-88403475:+|1.5032137969958883|0.2183413116611915|2.78|151.0|88|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 488.602622 1462.78604 0.14645 7.1554E-05 2.3705 0.0011583 2.517 0.0012298 488.60408563898375 110.89 0.024506 114.52 114.51 114.53 3.6326 0.13606 0.00012892 NaN 0.50596 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 15497 43616 10108 27627 27639 0.07315647359632749 TFRNKIGH 8 Unmodified _TFRNKIGH_ 0 0 0 ENST00000240100.6_1_8:29191910-29192249:-|nuORF ENST00000240100.6_1_8:29191910-29192249:-|nuORF ENST00000240100.6_1_8:29191910-29192249:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 486.7711486816406 2 486.772326 971.530098 0.19654 9.5669E-05 -1.5754 -0.00076688 -1.3789 -0.00067121 486.7714725592881 68.315 0.065384 71.585 71.557 71.623 3.2696 5 4 2 0 0 0 0.72333 1 16535 16535 0.79363 0 1 50452 43617 5899 27628 27640 50175 50175 0.04319429085740012 TFRNKIGH 8 Unmodified _TFRNKIGH_ 0 0 0 ENST00000240100.6_1_8:29191910-29192249:-|nuORF ENST00000240100.6_1_8:29191910-29192249:-|nuORF ENST00000240100.6_1_8:29191910-29192249:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 486.772326 971.530098 0.15407 7.4998E-05 -1.4183 -0.00069041 -1.2643 -0.00061541 486.7717768428823 68.462 0.10168 71.66 71.636 71.737 3.1977 0.037508 0.00011631 NaN 0.79363 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 52975 43618 5899 27628 27640 0.04319429085740012 TFRVMNRT 8 Unmodified _TFRVMNRT_ 0 0 0 REV__L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|32|3|anti-sense REV__L1ME3A_dup15453|chr21:42842628-42843163:+|1.6851753741708582|0.1804351971756395|3.22|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_1 2 512.7733154296875 2 512.771468 1023.52838 NaN NaN NaN NaN NaN NaN NaN 83.316 1 86.855 86.355 87.355 3.5386 0 0 0 0.40625 1 20834 20834 2.3027 0.24298 1 + 43619 28005 27629 27641 50176 50176 0.017560520054985318 TFSFYSHLI 9 Unmodified _TFSFYSHLI_ 0 0 0 L1MEd_dup1875|chr2:9609334-9609932:+|1.6320293291386283|0.0194428279178804|6.39|151.0|40|2|anti-sense L1MEd_dup1875|chr2:9609334-9609932:+|1.6320293291386283|0.0194428279178804|6.39|151.0|40|2|anti-sense L1MEd_dup1875|chr2:9609334-9609932:+|1.6320293291386283|0.0194428279178804|6.39|151.0|40|2|anti-sense MSMS UPN48_class_I_Rep_1 5 558.2404174804688 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 65.817 1 69.269 68.769 69.769 3.4516 0 0 0 0.38639 1 15002 15002 3.9444 0.66309 1 43620 13187 27630 27642 50177 50177 -0.0027365941400603333 TFSIQKKPIT 10 Unmodified _TFSIQKKPIT_ 0 0 0 L1MEi_dup2899|chr9:37820182-37820888:+|1.1146903039078684|0.0320811702454007|5.12|149.0|20|2|sense L1MEi_dup2899|chr9:37820182-37820888:+|1.1146903039078684|0.0320811702454007|5.12|149.0|20|2|sense L1MEi_dup2899|chr9:37820182-37820888:+|1.1146903039078684|0.0320811702454007|5.12|149.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 581.8417358398438 2 581.845156 1161.67576 NaN NaN NaN NaN NaN NaN NaN 89.313 1 93.051 92.551 93.551 3.7379 0 0 0 0.53105 1 21273 21273 1.4819 0.15237 1 43621 13454 27631 27643 50178 50178 0.10138847091252501 TFSKLKFKNV 10 Unmodified _TFSKLKFKNV_ 0 0 0 L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|78|2|anti-sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|78|2|anti-sense L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|78|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.361328125 2 606.360973 1210.70739 0.6065 0.00036776 0.68226 0.00041369 1.2888 0.00078145 606.3610303999629 110.2 0.18513 110.2 110.11 110.3 0 42 15 3 0 0 0 0.56118 1 27153 27153 2.9952 0.26005 1 2325700 43622 12231 27632 27644 50179 50179 0.11046839845221257 TFSKQKLF 8 Unmodified _TFSKQKLF_ 0 0 0 REV__L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|155|3|anti-sense REV__L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|155|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.7873840332031 2 499.78711 997.559667 NaN NaN NaN NaN NaN NaN NaN 31.56 1 31.56 31.06 32.06 0 0 0 0 0.40625 1 5289 5289 2.3027 0 1 + 43623 24111 27633 27645 50180 50180 0.060789483112330345 TFSLTLSLPR 10 Unmodified _TFSLTLSLPR_ 0 0 0 REV__ENST00000350210.6_1_1:155220891-155221327:-|nuORF REV__ENST00000350210.6_1_1:155220891-155221327:-|nuORF MSMS UPN46_class_I_Rep_3 1 567.801025390625 2 567.829506 1133.64446 NaN NaN NaN NaN NaN NaN NaN 83.689 1 83.689 83.189 84.189 0 0 0 0 0.53105 1 19889 19889 1.3295 0.63916 1 + 43624 21852 27634 27646 50181 50181 0.08298274057187882 TFSSAEFSVF 10 Unmodified _TFSSAEFSVF_ 0 0 0 L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|48|2|anti-sense L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|48|2|anti-sense L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|48|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.2614135742188 2 561.261122 1120.50769 0.53136 0.00029823 -0.40747 -0.0002287 0.1239 6.9537E-05 561.2607830559244 64.201 0.17943 67.675 67.51 67.69 3.4743 18 12 2 0 0 0 0.41718 1 14488 14488 18.146 4.2403 1 81268 43625 13357 27635 27647 50182 50182 -0.047742598932018154 TFSSAEFSVF 10 Unmodified _TFSSAEFSVF_ 0 0 0 L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|48|2|anti-sense L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|48|2|anti-sense L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|48|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 561.261122 1120.50769 0.44761 0.00025123 -0.24594 -0.00013804 0.20167 0.00011319 561.2606932222974 64.067 0.079712 67.575 67.552 67.632 3.5083 -0.049993 0.00014737 NaN 18.146 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 56790 43626 13357 27635 27647 -0.047742598932018154 TFSTLLTNCK 10 Unmodified _TFSTLLTNCK_ 0 0 0 ENST00000557486.1_1_14:73748983-73753845:-|nuORF ENST00000557486.1_1_14:73748983-73753845:-|nuORF ENST00000557486.1_1_14:73748983-73753845:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 564.2918701171875 2 564.291899 1126.56925 0.40233 0.00022703 -0.13577 -7.6614E-05 0.26656 0.00015042 564.2918726439453 49.269 0.84204 52.616 52.309 53.151 3.3465 102 55 3 0 0 0 0.56118 1 10800 10800 2.9952 0 1 193820 43627 7440 27636 27648 50183 50183 0.011023485344367145 TFSTMGRA 8 Unmodified _TFSTMGRA_ 0 0 0 ENST00000494472.1_1_2:46378245-46386996:+|nuORF ENST00000494472.1_1_2:46378245-46386996:+|nuORF ENST00000494472.1_1_2:46378245-46386996:+|nuORF MSMS UPN46_class_I_Rep_3 1 435.71014404296875 2 435.710545 869.406537 NaN NaN NaN NaN NaN NaN NaN 102.95 1 102.95 102.45 103.45 0 0 0 0 0.40625 1 25122 25122 2.3027 0 1 43628 7087 27637 27649 50184 50184 -0.03338990076883874 TFSVMTGDCP 10 Unmodified _TFSVMTGDCP_ 0 0 0 Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|93|3|sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|93|3|sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|93|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.2191772460938 2 529.220085 1056.42562 -0.19532 -0.00010337 -0.65192 -0.00034501 -0.84724 -0.00044838 529.2197851314872 27.405 0.53251 30.903 30.634 31.166 3.4986 59 41 2 0 0 0 0.56333 1 4073 4073 1.4819 0 1 93356 43629 541 27638 27650 50185 50185 -0.10033821568140411 TFTFRSMIHF 10 Unmodified _TFTFRSMIHF_ 0 0 0 L1MEc_dup18062|chr21:43901787-43902372:+|1.0067487401797952|0.0147384489371655|6.09|151.0|34|3|anti-sense L1MEc_dup18062|chr21:43901787-43902372:+|1.0067487401797952|0.0147384489371655|6.09|151.0|34|3|anti-sense L1MEc_dup18062|chr21:43901787-43902372:+|1.0067487401797952|0.0147384489371655|6.09|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_3 7 643.8191528320312 2 643.821158 1285.62776 NaN NaN NaN NaN NaN NaN NaN 42.405 1 46.046 45.546 46.546 3.6415 0 0 0 0.53105 1 7767 7767 1.6526 0.17072 1 43630 13066 27639 27651 50186 50186 -0.0036255010040804336 TFTFSHATF 9 Unmodified _TFTFSHATF_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS UPN48_class_I_Rep_1 5 529.7506713867188 2 529.750724 1057.4869 0.38619 0.00020459 -0.020177 -1.0689E-05 0.36602 0.0001939 529.7506457843792 55.752 1.0555 59.257 58.931 59.987 3.5046 183 76 3 0 0 0 0.006343 7 11908 11863;11908;11947;11986;12023;12064;12107 120.45 62.979 1 719240 43631 5538 27640 27652 50187;50188;50189;50190;50191;50192;50193 50188 -0.03954805482203483 TFTFSHATF 9 Unmodified _TFTFSHATF_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS UPN48_class_I_Rep_2 6 529.7508544921875 2 529.750724 1057.4869 0.53934 0.00028572 -0.17131 -9.0753E-05 0.36803 0.00019496 529.7505982860356 55.755 1.0385 59.311 58.876 59.915 3.5559 175 71 3 0 0 0 0.0070613 6 11887 11850;11887;11924;11963;12000;12050 115.69 69.646 1 689330 43632 5538 27640 27652 50194;50195;50196;50197;50198;50199 50195 -0.03954805482203483 TFTFSHATF 9 Unmodified _TFTFSHATF_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS UPN48_class_I_Rep_3 7 529.7508544921875 2 529.750724 1057.4869 0.37583 0.0001991 0.027222 1.4421E-05 0.40305 0.00021352 529.7506930279964 55.689 1.174 59.245 58.782 59.956 3.5554 183 86 3 0 0 0 0.0052487 7 11866 11748;11791;11829;11866;11904;11946;11981 128.37 70.894 1 726750 43633 5538 27640 27652 50200;50201;50202;50203;50204;50205;50206 50203 -0.03954805482203483 TFTKARIR 8 Unmodified _TFTKARIR_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS UPN47_class_I_Rep_1 2 496.80584716796875 2 496.803626 991.592698 NaN NaN NaN NaN NaN NaN NaN 87.919 1 91.576 91.076 92.076 3.6563 0 0 0 0.40746 1 21979 21979 0.69038 0 1 + 43634 17783 27641 27653 50207 50207 0.09656575153940139 TFTKHFTYW 9 Unmodified _TFTKHFTYW_ 0 0 0 L1M1_dup317|chr1:113720148-113720592:+|1.2914463070322515|0.0637200900732277|4.34|151.0|6|1|sense L1M1_dup317|chr1:113720148-113720592:+|1.2914463070322515|0.0637200900732277|4.34|151.0|6|1|sense L1M1_dup317|chr1:113720148-113720592:+|1.2914463070322515|0.0637200900732277|4.34|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 615.798828125 2 615.800749 1229.58694 NaN NaN NaN NaN NaN NaN NaN 27.564 1 31.063 30.563 31.563 3.4986 0 0 0 0.39428 1 4157 4157 2.0598 0 1 43635 8545 27642 27654 50208 50208 -0.01866568148375336 TFTPAIYQY 9 Unmodified _TFTPAIYQY_ 0 0 0 L1ME3G_dup748|chr1:167658731-167659280:-|2.793727753998932|0.0237328492739165|6.88|151.0|29|1|anti-sense L1ME3G_dup748|chr1:167658731-167659280:-|2.793727753998932|0.0237328492739165|6.88|151.0|29|1|anti-sense L1ME3G_dup748|chr1:167658731-167659280:-|2.793727753998932|0.0237328492739165|6.88|151.0|29|1|anti-sense MSMS UPN47_class_I_Rep_1 2 552.27392578125 2 552.274032 1102.53351 NaN NaN NaN NaN NaN NaN NaN 71.248 1 74.623 74.123 75.123 3.3751 0 0 0 0.31276 1 17359 17359 10.074 0 1 43636 12847 27643 27655 50209 50209 -0.013653656509177381 TFTSSFFII 9 Unmodified _TFTSSFFII_ 0 0 0 REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|96|1|anti-sense REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|96|1|anti-sense MSMS UPN47_class_I_Rep_2 3 531.7775268554688 2 531.778951 1061.54335 NaN NaN NaN NaN NaN NaN NaN 73.905 1 77.21 76.71 77.71 3.3048 0 0 0 0.066339 1 18194 18194 32.305 1.6689 1 + 43637 32806 27644 27656 50210 50210 0.015038223544706852 TFTYLTTSF 9 Unmodified _TFTYLTTSF_ 0 0 0 ENSG00000280090|ENST00000356130|OR8B4 ENSG00000280090|ENST00000356130|OR8B4 ENSG00000280090|ENST00000356130|OR8B4 MSMS UPN46_class_I_Rep_3 1 540.7529296875 2 540.76604 1079.51753 NaN NaN NaN NaN NaN NaN NaN 48.615 1 48.615 48.115 49.115 0 0 0 0 0.2088 1 10144 10144 15.847 0.078963 1 43638 5845 27645 27657 50211 50211 -0.01905071887813392 TFVNQTFNLF 10 Unmodified _TFVNQTFNLF_ 0 0 0 REV__ENSG00000174130|ENST00000508254|TLR6 REV__ENSG00000174130|ENST00000508254|TLR6 MULTI-MSMS UPN48_class_I_Rep_1 5 615.8123168945312 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.3776 1 15579 15579 21.537 0 1 904810 + 43639 20508 27646 27658 50212 50212 0.002453971604609251 TFVNQTFNLF 10 Unmodified _TFVNQTFNLF_ 0 0 0 REV__ENSG00000174130|ENST00000508254|TLR6 REV__ENSG00000174130|ENST00000508254|TLR6 MULTI-MSMS UPN48_class_I_Rep_2 6 615.8118896484375 2 615.811313 1229.60807 0.50558 0.00031134 0.38705 0.00023835 0.89263 0.00054969 615.8115992791977 67.314 0.94589 70.811 70.409 71.354 3.4964 187 74 3 0 0 0 0.31818 1 15472 15472 27.629 0 1 1019000 + 43640 20508 27646 27658 50213 50213 0.002453971604609251 TFVNQTFNLF 10 Unmodified _TFVNQTFNLF_ 0 0 0 REV__ENSG00000174130|ENST00000508254|TLR6 REV__ENSG00000174130|ENST00000508254|TLR6 MULTI-MSMS UPN48_class_I_Rep_3 7 615.8126831054688 2 615.811313 1229.60807 0.62552 0.0003852 0.26056 0.00016046 0.88608 0.00054566 615.8115476347172 67.293 0.96441 70.801 70.328 71.292 3.5077 191 78 3 0 0 0 0.44401 1 15430 15430 16.149 0 1 835100 + 43641 20508 27646 27658 50214 50214 0.002453971604609251 TFVSVIQNI 9 Unmodified _TFVSVIQNI_ 0 0 0 REV__Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|32|2|sense REV__Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|32|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.78955078125 2 510.78985 1019.56515 0.15046 7.6853E-05 -0.14189 -7.2475E-05 0.0085718 4.3784E-06 510.7897306376402 76.082 0.43433 79.404 79.072 79.506 3.3216 101 43 3 0 0 0 0.037922 1 18769 18769 53.833 0 1 496530 + 43642 32822 27647 27659 50215 50215 0.056146271030456774 TFWFFQPH 8 Unmodified _TFWFFQPH_ 0 0 0 MLT1J_dup2758|chr3:49379948-49380420:+|1.0662020264099603|0.0072081405183|7.21|151.0|30|3|anti-sense MLT1J_dup2758|chr3:49379948-49380420:+|1.0662020264099603|0.0072081405183|7.21|151.0|30|3|anti-sense MLT1J_dup2758|chr3:49379948-49380420:+|1.0662020264099603|0.0072081405183|7.21|151.0|30|3|anti-sense MSMS UPN46_class_I_Rep_3 1 555.2643432617188 2 555.263802 1108.51305 NaN NaN NaN NaN NaN NaN NaN 34.592 1 34.592 34.092 35.092 0 0 0 0 0.40643 1 6195 6195 2.0598 0.21551 1 43643 16460 27648 27660 50216 50216 -0.03686491520056734 TFWLRMNF 8 Unmodified _TFWLRMNF_ 0 0 0 L1PA11_dup2975|chr11:78210945-78212787:-|3.376537619926757|0.4698235282242782|2.85|151.0|124|3|anti-sense L1PA11_dup2975|chr11:78210945-78212787:-|3.376537619926757|0.4698235282242782|2.85|151.0|124|3|anti-sense L1PA11_dup2975|chr11:78210945-78212787:-|3.376537619926757|0.4698235282242782|2.85|151.0|124|3|anti-sense MSMS UPN48_class_I_Rep_2 6 557.7789306640625 2 557.778762 1113.54297 NaN NaN NaN NaN NaN NaN NaN 34.509 1 38.183 37.683 38.683 3.6735 0 0 0 0.40746 1 5571 5571 0.69038 0 1 43644 13668 27649 27661 50217 50217 -0.009258758463602135 TFWRQQDKC 9 Unmodified _TFWRQQDKC_ 0 0 0 REV__nc|ENSG00000144535|Q8IYB7-5|DIS3L2 REV__nc|ENSG00000144535|Q8IYB7-5|DIS3L2 MSMS UPN47_class_I_Rep_3 4 404.5267028808594 3 404.525719 1210.55533 NaN NaN NaN NaN NaN NaN NaN 35.76 1 39.015 38.515 39.515 3.2547 0 0 0 0.38639 1 6662 6662 2.2828 0.95313 1 + 43645 32004 27650 27662 50218 50218 -0.041528841739818745 TFWWCVAAA 9 Unmodified _TFWWCVAAA_ 0 0 0 REV__L1PA8A_dup1445|chrX:9503010-9506979:+|2.698853459579034|0.0545453397783114|5.63|151.0|242|3|anti-sense REV__L1PA8A_dup1445|chrX:9503010-9506979:+|2.698853459579034|0.0545453397783114|5.63|151.0|242|3|anti-sense MSMS UPN46_class_I_Rep_3 1 527.7473754882812 2 527.744388 1053.47422 NaN NaN NaN NaN NaN NaN NaN 80.79 1 80.79 80.29 81.29 0 0 0 0 0.39326 1 19048 19048 2.3027 0.24298 1 + 43646 30257 27651 27663 50219 50219 -0.05037540146099673 TFWYCYFF 8 Unmodified _TFWYCYFF_ 0 0 0 REV__L1PA16_dup12035|chr15:49938183-49939819:+|2.946805958097495|0.0079930512890881|8.53|150.0|84|2|anti-sense REV__L1PA16_dup12035|chr15:49938183-49939819:+|2.946805958097495|0.0079930512890881|8.53|150.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 588.7461547851562 2 588.746596 1175.47864 0.41452 0.00024405 -0.54038 -0.00031815 -0.12586 -7.4098E-05 588.7458229380904 79.131 1.0087 82.577 82.155 83.163 3.4456 237 92 3 0 0 0 0.82752 1 19813 19813 19.439 1.304 1 1105900 + 43647 29339 27652 27664 50220 50220 -0.10208075723198817 TFYILPFCL 9 Unmodified _TFYILPFCL_ 0 0 0 L1ME3B_dup3249|chr7:2782289-2783321:-|1.1643801290499132|0.0487264475884041|4.58|151.0|41|1|anti-sense L1ME3B_dup3249|chr7:2782289-2783321:-|1.1643801290499132|0.0487264475884041|4.58|151.0|41|1|anti-sense L1ME3B_dup3249|chr7:2782289-2783321:-|1.1643801290499132|0.0487264475884041|4.58|151.0|41|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 558.7901000976562 2 558.793546 1115.57254 0.60821 0.00033987 -2.1092 -0.0011786 -1.5009 -0.00083871 558.7921458187539 56.572 0.7657 60.105 59.684 60.45 3.5333 98 66 2 0 0 0 0.11897 1 12057 12057 30.225 4.8255 1 314060 43648 12710 27653 27665 50221 50221 0.01937643379119436 TFYILPFCL 9 Unmodified _TFYILPFCL_ 0 0 0 L1ME3B_dup3249|chr7:2782289-2783321:-|1.1643801290499132|0.0487264475884041|4.58|151.0|41|1|anti-sense L1ME3B_dup3249|chr7:2782289-2783321:-|1.1643801290499132|0.0487264475884041|4.58|151.0|41|1|anti-sense L1ME3B_dup3249|chr7:2782289-2783321:-|1.1643801290499132|0.0487264475884041|4.58|151.0|41|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 558.7901611328125 2 558.793546 1115.57254 0.31489 0.00017596 -2.5093 -0.0014022 -2.1944 -0.0012262 558.7922655425092 56.446 0.82116 59.989 59.511 60.332 3.5427 121 75 3 0 0 0 0.15878 1 11968 11968 24.674 1.5255 1 349460 43649 12710 27653 27665 50222 50222 0.01937643379119436 TFYLSKSL 8 Unmodified _TFYLSKSL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS UPN48_class_I_Rep_1 5 479.765625 2 479.765843 957.517133 0.14242 6.8328E-05 0.04054 1.945E-05 0.18296 8.7778E-05 479.7657422613499 53.411 0.60854 56.93 56.716 57.324 3.5192 53 44 2 0 0 0 0.82752 2 11197 11197;11239 13.906 0 1 140410 43650 4870 27654 27666 50223;50224 50223 0.03667553183004202 TFYLSKSL 8 Unmodified _TFYLSKSL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS UPN48_class_I_Rep_2 6 479.7655944824219 2 479.765843 957.517133 0.29903 0.00014346 -0.17356 -8.3266E-05 0.12547 6.0197E-05 479.76567074613496 53.349 0.4147 56.959 56.746 57.161 3.6098 47 27 2 0 0 0 0.82752 2 11194 11131;11194 19.257 0 1 132300 43651 4870 27654 27666 50225;50226 50226 0.03667553183004202 TFYLSKSL 8 Unmodified _TFYLSKSL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS UPN48_class_I_Rep_3 7 479.76519775390625 2 479.765843 957.517133 0.076511 3.6707E-05 0.027213 1.3056E-05 0.10372 4.9763E-05 479.76580719553266 53.414 0.50556 56.998 56.728 57.233 3.5836 53 36 2 0 0 0 0.82752 1 11132 11132 17.113 0 1 129750 43652 4870 27654 27666 50227 50227 0.03667553183004202 TGARHGRG 8 Unmodified _TGARHGRG_ 0 0 0 ENST00000294309.7_2_11:68855463-68855787:+|nuORF ENST00000294309.7_2_11:68855463-68855787:+|nuORF ENST00000294309.7_2_11:68855463-68855787:+|nuORF MSMS UPN46_class_I_Rep_3 1 406.21795654296875 2 406.217717 810.420882 NaN NaN NaN NaN NaN NaN NaN 78.467 1 78.467 77.967 78.967 0 0 0 0 0.40625 1 18379 18379 2.3027 0 1 43653 6049 27655 27667 50228 50228 0.008088431862802281 TGARKMRQR 9 Unmodified _TGARKMRQR_ 0 0 0 ENST00000480488.2_1_20:18393475-18393700:-|nuORF ENST00000480488.2_1_20:18393475-18393700:-|nuORF ENST00000480488.2_1_20:18393475-18393700:-|nuORF MSMS UPN47_class_I_Rep_3 4 552.314208984375 2 552.314366 1102.61418 NaN NaN NaN NaN NaN NaN NaN 49.34 1 52.574 52.074 53.074 3.2345 0 0 0 0.39518 1 10806 10806 1.8442 0.19162 1 43654 6994 27656 27668 50229 50229 0.06697636911007976 TGEMYSGG 8 Unmodified _TGEMYSGG_ 0 0 0 REV__ENSG00000169992|ENST00000302926|NLGN2;REV__ENSG00000196338.13,NLGN3,chrX,+,I4.1,71153537,71155213|47|6.5|3|intron REV__ENSG00000196338.13,NLGN3,chrX,+,I4.1,71153537,71155213|47|6.5|3|intron MSMS UPN48_class_I_Rep_3 7 401.1567687988281 2 401.157811 800.301069 NaN NaN NaN NaN NaN NaN NaN 110.37 1 114.04 113.54 114.54 3.67 0 0 0 0.40604 1 26191 26191 2.5775 0 1 + 43655 20342;21029 27657 27669 50230 50230 -0.10706950993153441 TGFLNLRF 8 Unmodified _TGFLNLRF_ 0 0 0 REV__L1M2b_dup46|chr3:138648762-138649100:-|1.3120024375461756|0.0039012304551626|8.39|151.0|12|1|anti-sense REV__L1M2b_dup46|chr3:138648762-138649100:-|1.3120024375461756|0.0039012304551626|8.39|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.2718505859375 2 484.271627 966.528701 NaN NaN NaN NaN NaN NaN NaN 69.53 1 72.985 72.485 73.485 3.4548 0 0 0 0.40746 1 16137 16137 0.69038 0 1 + 43656 24274 27658 27670 50231 50231 0.044097949970023365 TGFLTIPLNV 10 Unmodified _TGFLTIPLNV_ 0 0 0 ENST00000481603.1_1_11:5626782-5632007:+|nuORF ENST00000481603.1_1_11:5626782-5632007:+|nuORF ENST00000481603.1_1_11:5626782-5632007:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 537.8130493164062 2 537.813325 1073.6121 0.57923 0.00031152 -0.99505 -0.00053515 -0.41583 -0.00022364 537.8126094536328 109.31 0.15061 112.84 112.72 112.87 3.5307 24 19 2 0 0 0 0.56118 1 26620 26620 2.9952 0 1 1103600 43657 7000 27659 27671 50232 50232 0.07823486654183398 TGFYLPRKF 9 Unmodified _TGFYLPRKF_ 0 0 0 nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11 nc|ENSG00000073670|O75078-2|ADAM11 nc|ENSG00000073670|O75078-2|ADAM11 MSMS UPN48_class_I_Rep_1 5 564.8135375976562 2 564.813659 1127.61277 NaN NaN NaN NaN NaN NaN NaN 111.68 1 115.32 114.82 115.82 3.6326 0 0 0 0.39518 1 27094 27094 1.8442 0 1 43658 1118 27660 27672 50233 50233 0.054063260938846724 TGGDQNIQF 9 Unmodified _TGGDQNIQF_ 0 0 0 REV__ENST00000567455.5_1_16:787149-790985:-|nuORF REV__ENST00000567455.5_1_16:787149-790985:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.2271728515625 2 490.227613 978.440674 -0.11143 -5.4628E-05 0.36533 0.00017909 0.25389 0.00012447 490.22772527058135 32.932 0.89948 36.387 36.126 37.026 3.4547 127 70 2 0 0 0 0.47197 1 5862 5862 3.5965 0 1 350420 + 43659 18222 27661 27673 50234 50234 -0.049408703842800605 TGHDRQSLNG 10 Unmodified _TGHDRQSLNG_ 0 0 0 REV__L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|17|1|sense REV__L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 542.7576904296875 2 542.760143 1083.50573 NaN NaN NaN NaN NaN NaN NaN 31.997 1 35.698 35.198 36.198 3.7015 0 0 0 0.53105 1 4807 4807 4.1895 0.24511 1 + 43660 30407 27662 27674 50235 50235 -0.032678758584324896 TGIFLPILR 9 Unmodified _TGIFLPILR_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_1 5 515.3262329101562 2 515.326402 1028.63825 0.28534 0.00014704 0.0059393 3.0607E-06 0.29128 0.00015011 515.3262758792333 74.031 0.12339 77.512 77.411 77.535 3.4812 19 10 3 0 0 0 0.21527 1 17475 17475 19.257 0 1 108410 43661 4246 27663 27675 50236 50236 0.1250780061632213 TGIFLPILR 9 Unmodified _TGIFLPILR_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_1 5 515.3264770507812 2 515.326402 1028.63825 0.28437 0.00014655 -0.31462 -0.00016213 -0.030242 -1.5585E-05 515.3261556148406 74.172 0.18823 77.662 77.543 77.732 3.49 29 18 2 0 0 0 0.21527 1 17510 17510 19.257 4.4187 1 165080 43662 4246 27663 27675 50237 50237 0.1250780061632213 TGIFLPILR 9 Unmodified _TGIFLPILR_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_1 5 515.3262939453125 2 515.326402 1028.63825 0.2839 0.0001463 0.062625 3.2272E-05 0.34653 0.00017857 515.3262896266309 74.33 0.32422 77.82 77.709 78.034 3.49 51 38 2 0 0 0 0.16559 1 17547 17547 24.021 4.7636 1 98651 43663 4246 27663 27675 50238 50238 0.1250780061632213 TGIFLPILR 9 Unmodified _TGIFLPILR_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_2 6 515.3264770507812 2 515.326402 1028.63825 0.33468 0.00017247 0.066852 3.445E-05 0.40154 0.00020692 515.3262711915349 74.034 0.59822 77.612 77.327 77.925 3.5779 155 67 3 0 0 0 0.090251 4 17431 17364;17399;17431;17460 36.127 10.728 1 500470 43664 4246 27663 27675 50239;50240;50241;50242 50241 0.1250780061632213 TGIFLPILR 9 Unmodified _TGIFLPILR_ 0 0 0 nc|ENSG00000166508|P33993-3|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7 nc|ENSG00000166508|P33993-3|MCM7 nc|ENSG00000166508|P33993-3|MCM7 MULTI-MSMS UPN48_class_I_Rep_3 7 515.32568359375 2 515.326402 1028.63825 0.38621 0.00019903 -0.15204 -7.8349E-05 0.23418 0.00012068 515.3262080024602 74.147 0.12429 77.698 77.585 77.709 3.5505 21 14 2 0 0 0 0.36392 1 17362 17362 10.074 0 1 237490 43665 4246 27663 27675 50243 50243 0.1250780061632213 TGILTKIVL 9 Unmodified _TGILTKIVL_ 0 0 0 L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|115|1|anti-sense L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|115|1|anti-sense L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|115|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 478.6369323730469 2 479.320786 956.627018 0.21499 0.00010305 -0.48247 -0.00023126 -0.26748 -0.00012821 479.32046657153256 65.265 0.54241 68.719 68.433 68.975 3.4541 71 38 2 0 0 0 0.12207 1 14848 14848 5.7319 0 1 141320 43666 10015 27664 27676 50244 50244 0.14696978522169957 TGKFIPISI 9 Unmodified _TGKFIPISI_ 0 0 0 L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|39|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|39|1|sense L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|39|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 488.2973937988281 2 488.29731 974.580068 0.30002 0.0001465 -0.064106 -3.1303E-05 0.23591 0.00011519 488.29716101566504 59.937 0.37085 63.417 63.13 63.501 3.4801 42 29 2 0 0 0 0.43982 1 13210 13210 5.7319 0 1 101460 43667 8517 27665 27677 50245 50245 0.09176118971060987 TGKIAAHL 8 Unmodified _TGKIAAHL_ 0 0 0 REV__ENST00000261721.8_1_15:83685236-83685284:-|nuORF REV__ENST00000261721.8_1_15:83685236-83685284:-|nuORF MSMS UPN48_class_I_Rep_1 5 405.74505615234375 2 405.745245 809.475937 NaN NaN NaN NaN NaN NaN NaN 22.815 1 26.376 25.876 26.876 3.5605 0 0 0 0.40625 1 2281 2281 2.3027 0 1 + 43668 21563 27666 27678 50246 50246 0.06357836934171246 TGKIQRAK 8 Unmodified _TGKIQRAK_ 0 0 0 ENSG00000183747|ENST00000573854|ACSM2A ENSG00000183747|ENST00000573854|ACSM2A ENSG00000183747|ENST00000573854|ACSM2A MULTI-SECPEP UPN47_class_I_Rep_2 3 450.7813415527344 2 451.282526 900.550499 0.029242 1.3196E-05 -0.78361 -0.00035363 -0.75437 -0.00034044 451.2818899946932 92.768 0.030228 96.233 96.214 96.244 3.4652 5 3 2 0 0 0 0.72333 1 22920 22920 0.6015 0 1 37204 43669 5017 27667 27679 50247 50247 0.09624599745552587 TGKLNNLFL 9 Unmodified _TGKLNNLFL_ 0 0 0 L1P3_dup681|chr3:196908302-196908541:+|1.293623728641526|0.0299058373786171|5.43|151.0|6|3|sense L1P3_dup681|chr3:196908302-196908541:+|1.293623728641526|0.0299058373786171|5.43|151.0|6|3|sense L1P3_dup681|chr3:196908302-196908541:+|1.293623728641526|0.0299058373786171|5.43|151.0|6|3|sense MSMS UPN48_class_I_Rep_3 7 510.29693603515625 2 510.297842 1018.58113 NaN NaN NaN NaN NaN NaN NaN 60.063 1 63.579 63.079 64.079 3.5169 0 0 0 0.3377 1 13163 13163 8.7454 0 1 43670 13547 27668 27680 50248 50248 0.07258333339939327 TGLLFFTW 8 Unmodified _TGLLFFTW_ 0 0 0 REV__L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|121|2|anti-sense REV__L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|121|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.7633972167969 2 492.763104 983.511654 0.27068 0.00013338 -0.70205 -0.00034594 -0.43137 -0.00021257 492.76269476880384 50.447 0.29865 53.673 53.484 53.782 3.2262 21 15 2 0 0 0 0.82752 1 11143 11143 2.3027 0 1 53652 + 43671 24527 27669 27681 50249 50249 0.019238743911841993 TGMLRRIIQNR 11 Unmodified _TGMLRRIIQNR_ 0 0 0 ENSG00000151532|ENST00000393077|VTI1A ENSG00000151532|ENST00000393077|VTI1A ENSG00000151532|ENST00000393077|VTI1A MULTI-SECPEP UPN46_class_I_Rep_3 1 453.433837890625 3 453.26635 1356.77722 0.14889 6.7488E-05 1.1479 0.0005203 1.2968 0.00058779 453.6010709471657 48.222 0.24728 48.222 48.062 48.309 0 41 25 2 0 0 0 22.551 1 10000 10000 0.45452 0 1 264920 43672 3592 27670 27682 50250 50250 0.1131039524220796 TGMVTERAPQA 11 Unmodified _TGMVTERAPQA_ 0 0 0 REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF MSMS UPN47_class_I_Rep_1 2 580.7780151367188 2 580.790055 1159.56556 NaN NaN NaN NaN NaN NaN NaN 45.583 1 49.283 48.783 49.783 3.6999 0 0 0 0.38417 1 9588 9588 4.1895 0.90819 1 + 43673 23174 27671 27683 50251 50251 -0.007843212393936483 TGNHRTFKGCQ 11 Unmodified _TGNHRTFKGCQ_ 0 0 0 REV__ENST00000479662.1_1_3:109190178-109190556:-|nuORF REV__ENST00000479662.1_1_3:109190178-109190556:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 625.2884521484375 2 624.798746 1247.58294 0.40603 0.00025369 -0.57764 -0.00036091 -0.1716 -0.00010722 624.7982457458506 65.573 0.6855 68.928 68.64 69.325 3.3557 50 37 2 0 0 0 0.40526 1 15713 15713 10.151 5.2536 1 126670 + 43674 22558 27672 27684 50252 50252 -0.030949809137609918 TGNHRTFKGCQ 11 Unmodified _TGNHRTFKGCQ_ 0 0 0 REV__ENST00000479662.1_1_3:109190178-109190556:-|nuORF REV__ENST00000479662.1_1_3:109190178-109190556:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 624.7980346679688 2 624.798746 1247.58294 0.44291 0.00027673 -0.40061 -0.0002503 0.042292 2.6424E-05 624.7982359281599 65.825 0.57098 69.01 68.749 69.32 3.1853 51 33 2 0 0 0 0.52578 1 15900 15900 7.1017 2.2047 1 118970 + 43675 22558 27672 27684 50253 50253 -0.030949809137609918 TGPGGVSLFI 10 Unmodified _TGPGGVSLFI_ 0 0 0 REV__MER2_dup6346|chr11:86057612-86057938:+|1.7902418392944657|0.0293379983944495|5.93|151.0|8|2|sense REV__MER2_dup6346|chr11:86057612-86057938:+|1.7902418392944657|0.0293379983944495|5.93|151.0|8|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 474.2826232910156 2 474.263468 946.512382 0.093724 4.445E-05 -0.11421 -5.4164E-05 -0.020482 -9.7139E-06 474.2631199658863 109.29 0.19147 112.92 112.82 113.01 3.6321 32 24 2 0 0 0 0.84575 1 26545 26545 10.074 2.1638 1 767950 + 43676 31148 27673 27685 50254 50254 0.03698669040238656 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MULTI-MSMS UPN46_class_I_Rep_3 1 584.8134765625 2 584.814722 1167.61489 0.45891 0.00026838 -0.33713 -0.00019716 0.12177 7.1215E-05 584.8143549899555 52.918 0.25953 52.918 52.733 52.993 0 41 27 2 0 0 0 5.1594E-19 4 11358 11314;11327;11352;11358 165.58 137.96 1 291700 + 43677 640 27674 27686 50255;50256;50257;50258 50258 0.03778754831682818 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MULTI-MSMS UPN46_class_I_Rep_3 1 584.8157348632812 2 584.814722 1167.61489 0.45825 0.00026799 0.076979 4.5018E-05 0.53523 0.00031301 584.8148029162479 53.12 0.23058 53.12 52.984 53.215 0 41 22 3 0 0 0 0.16397 1 11400 11400 42.312 25.2 1 336230 + 43678 640 27674 27686 50259 50259 0.03778754831682818 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MSMS UPN46_class_I_Rep_3 1 584.815673828125 2 584.814722 1167.61489 NaN NaN NaN NaN NaN NaN NaN 53.26 1 53.26 52.76 53.76 0 0 0 0 0.17439 1 11447 11447 18.721 11.998 1 + 43679 640 27674 27686 50260 50260 0.03778754831682818 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MULTI-MSMS UPN47_class_I_Rep_1 2 584.8148193359375 2 584.814722 1167.61489 0.14293 8.359E-05 -0.15894 -9.295E-05 -0.016004 -9.3594E-06 584.8146634789366 46.758 0.75623 50.453 50.134 50.89 3.6951 81 47 2 0 0 0 0.31898 4 9948 9864;9905;9948;10002 30.703 18.463 1 165450 + 43680 640 27674 27686 50261;50262;50263;50264 50263 0.03778754831682818 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MULTI-MSMS UPN47_class_I_Rep_2 3 584.814697265625 2 584.814722 1167.61489 0.30609 0.00017901 -0.32186 -0.00018823 -0.015769 -9.2217E-06 584.8146051975231 47.226 0.6894 50.577 50.19 50.88 3.3515 78 44 2 0 0 0 0.32209 4 10174 10036;10078;10118;10174 26.021 17.275 1 124700 + 43681 640 27674 27686 50265;50266;50267;50268 50268 0.03778754831682818 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MULTI-MSMS UPN47_class_I_Rep_3 4 584.815185546875 2 584.814722 1167.61489 0.34474 0.00020161 -0.15586 -9.1151E-05 0.18888 0.00011046 584.8145603355584 47.275 0.66974 50.519 50.162 50.831 3.2439 52 42 2 0 0 0 0.14663 5 10177 10175;10177;10216;10256;10269 53.47 41.229 1 215560 + 43682 640 27674 27686 50269;50270;50271;50272;50273 50270 0.03778754831682818 TGPNLHGLFGR 11 Unmodified _TGPNLHGLFGR_ 0 0 0 CON__P62894;ENSG00000172115|ENST00000305786|CYCS CON__P62894 CON__P62894 MULTI-MATCH UPN48_class_I_Rep_1 5 2 584.814722 1167.61489 0.40105 0.00023454 -0.086084 -5.0343E-05 0.31496 0.00018419 584.8144779048461 47.305 0.2903 50.827 50.626 50.917 3.5219 0.23287 0.00013954 NaN 53.47 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 132700 + 43683 640 27674 27686 0.03778754831682818 TGQLKVLMP 9 Unmodified _TGQLKVLMP_ 0 0 0 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant MSMS UPN46_class_I_Rep_3 1 493.7869567871094 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 109.56 1 109.56 109.06 110.06 0 0 0 0 0.36505 1 26921 26921 7.2892 0.56607 1 43684 4175 27675 27687 50274 50274 0.06967875093573639 TGQLKVLMP 9 Unmodified _TGQLKVLMP_ 0 0 0 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant MSMS UPN47_class_I_Rep_1 2 493.7867736816406 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 109.49 1 113.1 112.6 113.6 3.6046 0 0 0 0.36505 1 27014 27014 7.2892 2.5332 1 43685 4175 27675 27687 50275 50275 0.06967875093573639 TGQLKVLMP 9 Unmodified _TGQLKVLMP_ 0 0 0 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant MSMS UPN48_class_I_Rep_1 5 493.7865905761719 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 109.34 1 112.97 112.47 113.47 3.6321 0 0 0 0.36505 1 26549 26549 7.2892 0.56607 1 43686 4175 27675 27687 50276 50276 0.06967875093573639 TGQLKVLMP 9 Unmodified _TGQLKVLMP_ 0 0 0 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant FAT3|p.N1793Kfs*14|1|0.06|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant MSMS UPN48_class_I_Rep_1 5 493.7868957519531 2 493.788795 985.563038 NaN NaN NaN NaN NaN NaN NaN 109.58 1 113.21 112.71 113.71 3.6321 0 0 0 0.36505 1 26615 26615 7.2892 0 1 43687 4175 27675 27687 50277 50277 0.06967875093573639 TGRELDLLY 9 Unmodified _TGRELDLLY_ 0 0 0 REV__ENSG00000085741|ENST00000322563|WNT11 REV__ENSG00000085741|ENST00000322563|WNT11 MULTI-MSMS UPN47_class_I_Rep_1 2 540.2896728515625 2 540.290214 1078.56587 0.42971 0.00023217 -0.28653 -0.00015481 0.14317 7.7355E-05 540.2901945588759 59.424 1.4984 62.823 62.283 63.781 3.3982 340 107 4 0 0 0 0.24936 1 14080 14080 17.113 0.96379 1 8214600 + 43688 17957 27676 27688 50278 50278 0.02973421752108152 TGRKRKPR 8 Unmodified _TGRKRKPR_ 0 0 0 ENST00000471215.1_1_7:73111917-73112213:+|nuORF;ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23 ENST00000471215.1_1_7:73111917-73112213:+|nuORF ENST00000471215.1_1_7:73111917-73112213:+|nuORF MSMS UPN47_class_I_Rep_2 3 499.82159423828125 2 499.820141 997.62573 NaN NaN NaN NaN NaN NaN NaN 39.95 1 43.322 42.822 43.822 3.3712 0 0 0 0.40625 1 7903 7903 2.3027 0 1 43689 1088 27677 27689 50279 50279 0.1268220199665393 TGRLRPLS 8 Unmodified _TGRLRPLS_ 0 0 0 MLT1H_dup9794|chr22:23216574-23217058:-|1.1439996989374126|0.035154209848026|5.02|151.0|19|1|anti-sense MLT1H_dup9794|chr22:23216574-23217058:-|1.1439996989374126|0.035154209848026|5.02|151.0|19|1|anti-sense MLT1H_dup9794|chr22:23216574-23217058:-|1.1439996989374126|0.035154209848026|5.02|151.0|19|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.2745666503906 2 450.274701 898.534849 0.18588 8.3698E-05 -0.51583 -0.00023227 -0.32995 -0.00014857 450.27448463652513 87.74 0.21415 87.74 87.693 87.907 0 87 24 4 0 0 0 0.82752 1 21053 21053 4.3292 0 1 13255000 43690 16431 27678 27690 50280 50280 0.08152313228504227 TGRRRRRRAP 10 Unmodified _TGRRRRRRAP_ 0 0 0 ENST00000430430.5_1_8:81398575-81399061:+|nuORF ENST00000430430.5_1_8:81398575-81399061:+|nuORF ENST00000430430.5_1_8:81398575-81399061:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 427.2642517089844 3 427.932693 1280.77625 -0.064362 -2.7543E-05 0.61368 0.00026261 0.54932 0.00023507 427.93295159189137 53.322 0.31079 56.85 56.755 57.066 3.5278 35 21 3 0 0 0 0.84575 1 11932 11932 0.69767 0 1 245840 43691 6724 27679 27691 50281 50281 0.14709361708173674 TGRTQGTSH 9 Unmodified _TGRTQGTSH_ 0 0 0 L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|117|2|sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|117|2|sense L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|117|2|sense MSMS UPN48_class_I_Rep_1 5 472.7290344238281 2 472.730855 943.447156 NaN NaN NaN NaN NaN NaN NaN 98.467 1 102.07 101.57 102.57 3.6065 0 0 0 0.36505 1 23763 23763 7.2892 1.0834 1 43692 14696 27680 27692 50282 50282 -0.026829324329128212 TGSEELGDSG 10 Unmodified _TGSEELGDSG_ 0 0 0 REV__ENST00000503952.5_1_4:128606686-128637588:+|nuORF REV__ENST00000503952.5_1_4:128606686-128637588:+|nuORF MSMS UPN48_class_I_Rep_1 5 475.8175964355469 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 40.791 1 44.297 43.797 44.797 3.506 0 0 0 0.53105 1 7358 7358 1.4819 0.68827 1 + 43693 20026 27681 27693 50283 50283 -0.09429177100355446 TGSEPRPSY 9 Unmodified _TGSEPRPSY_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MSMS UPN46_class_I_Rep_3 1 497.1803283691406 2 497.235439 992.456324 NaN NaN NaN NaN NaN NaN NaN 56.461 1 56.461 55.961 56.961 0 0 0 0 0.37476 1 12317 12317 6.7232 1.4925 1 + 43694 20520 27682 27694 50284 50284 -0.040205838672363825 TGSMKILR 8 Unmodified _TGSMKILR_ 0 0 0 L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|93|3|sense L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|93|3|sense L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|93|3|sense MSMS UPN46_class_I_Rep_3 1 453.2666931152344 2 453.265487 904.516422 NaN NaN NaN NaN NaN NaN NaN 47.296 1 47.296 46.796 47.796 0 0 0 0 0.40604 1 9768 9768 2.5775 0 1 43695 9775 27683 27695 50285 50285 0.06034435262313309 TGTIVLAFFN 10 Unmodified _TGTIVLAFFN_ 0 0 0 REV__ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron REV__ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron MULTI-MSMS UPN47_class_I_Rep_1 2 541.7982788085938 2 541.797675 1081.5808 0.36812 0.00019945 -0.042971 -2.3282E-05 0.32515 0.00017616 541.7976820275071 67.007 0.297 70.369 70.178 70.475 3.3611 31 24 2 0 0 0 0.52562 1 16079 16079 8.7454 0.83525 1 80404 + 43696 19663 27684 27696 50286 50286 0.04326913620070627 TGTIVLAFFN 10 Unmodified _TGTIVLAFFN_ 0 0 0 REV__ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron REV__ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron MSMS UPN47_class_I_Rep_1 2 541.7981567382812 2 541.797675 1081.5808 NaN NaN NaN NaN NaN NaN NaN 67.285 1 70.646 70.146 71.146 3.3611 0 0 0 0.53105 1 16171 16171 8.7454 3.0136 1 + 43697 19663 27684 27696 50287 50287 0.04326913620070627 TGTIVLAFFN 10 Unmodified _TGTIVLAFFN_ 0 0 0 REV__ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron REV__ENSG00000151687.14,ANKAR,chr2,+,I13.1,189720788,189727822|30|5.31|5|intron MULTI-SECPEP UPN47_class_I_Rep_1 2 542.2354736328125 2 541.797675 1081.5808 0.36812 0.00019945 -0.042971 -2.3282E-05 0.32515 0.00017616 541.7976820275071 67.007 0.297 70.369 70.178 70.475 3.3611 31 24 2 0 0 0 0.84575 1 16056 16056 8.7454 3.0136 1 80404 + 43698 19663 27684 27696 50288 50288 0.04326913620070627 TGTVRRRP 8 Unmodified _TGTVRRRP_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MSMS UPN48_class_I_Rep_1 5 471.7967224121094 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 119.62 1 123.24 122.74 123.74 3.6189 0 0 0 0.40746 1 29200 29200 0.69038 0 1 43699 4339 27685 27697 50289 50289 0.0787823383433306 TGVHSQTHT 9 Unmodified _TGVHSQTHT_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS UPN47_class_I_Rep_1 2 484.232666015625 2 484.23323 966.451907 -0.36754 -0.00017798 -0.28267 -0.00013688 -0.65022 -0.00031486 484.23303110398206 14.943 0.45555 18.418 18.26 18.715 3.475 115 52 3 0 0 0 0.10568 2 705 673;705 32.786 0.86883 1 248380 43700 5004 27686 27698 50290;50291 50291 -0.032660482901405885 TGVHSQTHT 9 Unmodified _TGVHSQTHT_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS UPN47_class_I_Rep_2 3 484.2326354980469 2 484.23323 966.451907 -0.17517 -8.4821E-05 0.001282 6.2076E-07 -0.17388 -8.4201E-05 484.23315399640325 15.136 0.58482 18.522 18.291 18.876 3.3864 129 66 3 0 0 0 0.14216 1 717 717 26.268 0.86883 1 251950 43701 5004 27686 27698 50292 50292 -0.032660482901405885 TGVHSQTHT 9 Unmodified _TGVHSQTHT_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS UPN47_class_I_Rep_3 4 484.23272705078125 2 484.23323 966.451907 -0.72725 -0.00035216 0.06556 3.1746E-05 -0.66169 -0.00032041 484.23315464737055 14.953 0.53972 18.319 18.084 18.623 3.3659 153 64 3 0 0 0 0.10568 2 649 649;677 32.786 0.4802 1 191310 43702 5004 27686 27698 50293;50294 50293 -0.032660482901405885 TGVLHVLFRLQ 11 Unmodified _TGVLHVLFRLQ_ 0 0 0 REV__L1PA6_dup630|chr2:101455312-101460384:-|7.598321145561641|0.0476436255407038|7.32|151.0|94|3|sense REV__L1PA6_dup630|chr2:101455312-101460384:-|7.598321145561641|0.0476436255407038|7.32|151.0|94|3|sense MSMS UPN48_class_I_Rep_1 5 641.8828735351562 2 641.885147 1281.75574 NaN NaN NaN NaN NaN NaN NaN 88.721 1 92.344 91.844 92.844 3.6229 0 0 0 0.38417 1 21288 21288 2.9952 0 1 + 43703 29948 27687 27699 50295 50295 0.12613333485114708 TGVPKRRP 8 Unmodified _TGVPKRRP_ 0 0 0 REV__ENST00000469878.5_1_1:155100369-155106166:+|nuORF REV__ENST00000469878.5_1_1:155100369-155106166:+|nuORF MSMS UPN46_class_I_Rep_3 1 455.8301696777344 2 455.782693 909.550834 NaN NaN NaN NaN NaN NaN NaN 56.636 1 56.636 56.136 57.136 0 0 0 0 0.40604 1 12364 12364 2.5775 0 1 + 43704 22499 27688 27700 50296 50296 0.09244019465415931 TGWMCFFLL 9 Unmodified _TGWMCFFLL_ 0 0 0 REV__L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|78|1|anti-sense REV__L1MB4_dup4706|chrX:41107320-41109290:-|2.545698469653365|0.027399691302689|6.54|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 559.2649536132812 2 559.264099 1116.51364 NaN NaN NaN NaN NaN NaN NaN 74.411 1 77.805 77.305 78.305 3.3937 0 0 0 0.38478 1 18313 18313 4.3292 0 1 + 43705 25979 27689 27701 50297 50297 -0.03995156186852 TGYLKGYTL 9 Unmodified _TGYLKGYTL_ 0 0 0 nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A MULTI-MSMS UPN47_class_I_Rep_2 3 508.2765808105469 2 508.276575 1014.5386 0.10517 5.3457E-05 0.062874 3.1958E-05 0.16805 8.5415E-05 508.27648803819704 49.09 0.97618 52.437 52.115 53.091 3.3465 158 65 3 0 0 0 0.052941 2 10718 10718;10757 47.732 0.13759 1 607570 43706 5796 27690 27702 50298;50299 50298 0.03190938211707817 THAQVRLLR 9 Unmodified _THAQVRLLR_ 0 0 0 L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|66|1|sense L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|66|1|sense L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|66|1|sense MSMS UPN48_class_I_Rep_2 6 547.3331298828125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 94.327 1 98.103 97.603 98.603 3.7761 0 0 0 0.4007 1 22427 22427 0.52476 0 1 43707 14245 27691 27703 50300 50300 0.10899051448268438 THCTYHHIY 9 Unmodified _THCTYHHIY_ 0 0 0 REV__L1MC1_dup758|chr1:186952395-186953533:-|1.243304852705674|0.1545402371705282|3.01|150.0|59|2|anti-sense REV__L1MC1_dup758|chr1:186952395-186953533:-|1.243304852705674|0.1545402371705282|3.01|150.0|59|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 587.2753295898438 2 587.758558 1173.50256 0.007406 4.3529E-06 -1.4266 -0.00083853 -1.4192 -0.00083417 587.757600280141 41.832 0.22432 45.511 45.347 45.572 3.6792 19 15 2 0 0 0 0.12527 1 8391 8391 0.6015 0.076735 1 58977 + 43708 26598 27692 27704 50301 50301 -0.07724842236780205 THFGAAAPVL 10 Unmodified _THFGAAAPVL_ 0 0 0 REV__ENSG00000145217|ENST00000398516|SLC26A1 REV__ENSG00000145217|ENST00000398516|SLC26A1 MULTI-SECPEP UPN48_class_I_Rep_3 7 492.2975158691406 2 492.269084 982.523616 0.27396 0.00013486 -0.21006 -0.00010341 0.063899 3.1455E-05 492.2690037883244 64.727 0.56663 68.236 67.904 68.471 3.5083 56 47 2 0 0 0 0.84575 1 14540 14540 9.3831 3.1773 1 72055 + 43709 19507 27693 27705 50302 50302 0.03165491134382137 THFHERKLVD 10 Unmodified _THFHERKLVD_ 0 0 0 REV__L1PB_dup685|chr7:5009869-5010749:+|1.5562528705403975|0.3258746817723233|2.26|151.0|27|3|sense REV__L1PB_dup685|chr7:5009869-5010749:+|1.5562528705403975|0.3258746817723233|2.26|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 641.3389892578125 2 641.338561 1280.66257 NaN NaN NaN NaN NaN NaN NaN 55.914 1 55.914 55.414 56.414 0 0 0 0 0.53105 1 12173 12173 1.4819 0 1 + 43710 30290 27694 27706 50303 50303 0.033464090319057505 THFHRNSY 8 Unmodified _THFHRNSY_ 0 0 0 REV__L1MB5_dup2619|chr6:34343563-34344655:+|1.3615968097704223|0.0622046457792884|4.45|151.0|33|3|sense REV__L1MB5_dup2619|chr6:34343563-34344655:+|1.3615968097704223|0.0622046457792884|4.45|151.0|33|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.249755859375 2 531.249215 1060.48388 0.11736 6.2348E-05 -1.4542 -0.00077255 -1.3369 -0.00071021 531.2484290134637 31.89 0.36329 31.89 31.722 32.085 0 33 25 2 0 0 0 0.82752 1 5385 5385 3.5965 0 1 64578 + 43711 26050 27695 27707 50304 50304 -0.04394635816333903 THFISFPCLA 10 Unmodified _THFISFPCLA_ 0 0 0 L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|169|2|anti-sense L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|169|2|anti-sense L1MCa_dup5419|chr12:16023777-16027329:+|3.1285041201460717|0.4401565788182576|2.83|151.0|169|2|anti-sense MSMS UPN48_class_I_Rep_1 5 568.2818603515625 2 568.283877 1134.5532 NaN NaN NaN NaN NaN NaN NaN 31.469 1 35.003 34.503 35.503 3.5342 0 0 0 0.53105 1 4659 4659 1.6526 0 1 43712 11822 27696 27708 50305 50305 -0.008693129117773424 THGETHGY 8 Unmodified _THGETHGY_ 0 0 0 REV__ENSG00000198554|ENST00000360586|WDHD1 REV__ENSG00000198554|ENST00000360586|WDHD1 MSMS UPN47_class_I_Rep_1 2 450.7603454589844 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 115.7 1 119.29 118.79 119.79 3.5943 0 0 0 0.40738 1 28632 28632 0.79363 0 1 + 43713 21129 27697 27709 50306 50306 -0.08157695244278784 THGETHGY 8 Unmodified _THGETHGY_ 0 0 0 REV__ENSG00000198554|ENST00000360586|WDHD1 REV__ENSG00000198554|ENST00000360586|WDHD1 MSMS UPN47_class_I_Rep_2 3 450.7762145996094 2 451.193574 900.372594 NaN NaN NaN NaN NaN NaN NaN 85.946 1 89.379 88.879 89.879 3.4329 0 0 0 0.40738 1 21381 21381 0.79363 0 1 + 43714 21129 27697 27709 50307 50307 -0.08157695244278784 THIRKHGN 8 Unmodified _THIRKHGN_ 0 0 0 REV__nc|ENSG00000167232|Q05481-2|ZNF91 REV__nc|ENSG00000167232|Q05481-2|ZNF91 MSMS UPN47_class_I_Rep_1 2 481.75634765625 2 481.767575 961.520596 NaN NaN NaN NaN NaN NaN NaN 51.039 1 54.633 54.133 55.133 3.5932 0 0 0 0.40625 1 11244 11244 2.3027 0.82083 1 + 43715 20212 27698 27710 50308 50308 0.03829660800226975 THKHLIVH 8 Unmodified _THKHLIVH_ 0 0 0 REV__MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|27|2|anti-sense REV__MER75_dup471|chr21:35010692-35011234:-|4.29607699223812|0.0041014062283644|10.03|150.0|27|2|anti-sense MSMS UPN48_class_I_Rep_1 5 492.7883605957031 2 492.790518 983.566484 NaN NaN NaN NaN NaN NaN NaN 72.965 1 76.438 75.938 76.938 3.4732 0 0 0 0.40625 1 17162 17162 2.3027 0 1 + 43716 31556 27699 27711 50309 50309 0.07404305982470305 THKWPIDLKK 10 Unmodified _THKWPIDLKK_ 0 0 0 L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|16|2|sense L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|16|2|sense L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 633.3873901367188 2 633.371872 1264.72919 NaN NaN NaN NaN NaN NaN NaN 85.665 1 89.271 88.771 89.771 3.6059 0 0 0 0.53105 1 20497 20497 2.9952 0 1 43717 9682 27700 27712 50310 50310 0.1074164459378153 THLDNQQIY 9 Unmodified _THLDNQQIY_ 0 0 0 REV__L1ME3A_dup6578|chr7:32507267-32508326:-|2.299298567413011|0.0501712489607761|5.52|151.0|27|2|sense REV__L1ME3A_dup6578|chr7:32507267-32508326:-|2.299298567413011|0.0501712489607761|5.52|151.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.7774047851562 2 566.275095 1130.53564 0.077999 4.4169E-05 -0.81795 -0.00046319 -0.73996 -0.00041902 566.7766466366959 44.488 0.97787 48.183 47.837 48.815 3.6951 202 67 4 0 0 0 0.48643 1 9195 9195 2.0598 0 1 326880 + 43718 28025 27701 27713 50311 50311 -0.024409369130808045 THLGLLLC 8 Unmodified _THLGLLLC_ 0 0 0 L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|91|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|91|1|anti-sense L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|91|1|anti-sense MSMS UPN46_class_I_Rep_3 1 435.2510681152344 2 435.249306 868.484059 NaN NaN NaN NaN NaN NaN NaN 76.91 1 76.91 76.41 77.41 0 0 0 0 0.40738 1 17958 17958 0.79363 0 1 43719 11146 27702 27714 50312 50312 0.044556478593108295 THLKKKIK 8 Unmodified _THLKKKIK_ 0 0 0 L1ME3A_dup10959|chr12:22633369-22634475:-|1.146913072201844|0.1252981086639133|3.19|151.0|81|3|anti-sense L1ME3A_dup10959|chr12:22633369-22634475:-|1.146913072201844|0.1252981086639133|3.19|151.0|81|3|anti-sense L1ME3A_dup10959|chr12:22633369-22634475:-|1.146913072201844|0.1252981086639133|3.19|151.0|81|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 498.33990478515625 2 498.339844 994.665135 0.18325 9.1318E-05 0.37847 0.00018861 0.56172 0.00027993 498.33993402579875 108.33 0.57871 111.96 111.57 112.15 3.6313 97 50 5 0 0 0 0.82752 1 26145 26145 7.9102 0 1 9216600 43720 12623 27703 27715 50313 50313 0.16758909227507957 THLLEHLIL 9 Unmodified _THLLEHLIL_ 0 0 0 L1M4a1_dup1067|chr6:83028679-83030153:-|1.3462786593659195|0.0761515107460156|4.14|151.0|62|1|anti-sense L1M4a1_dup1067|chr6:83028679-83030153:-|1.3462786593659195|0.0761515107460156|4.14|151.0|62|1|anti-sense L1M4a1_dup1067|chr6:83028679-83030153:-|1.3462786593659195|0.0761515107460156|4.14|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_2 6 544.826904296875 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 72.771 1 76.336 75.836 76.836 3.5645 0 0 0 0.38639 1 17052 17052 3.9444 0 1 43721 8937 27704 27716 50314 50314 0.09866595265384603 THLLIQAQSPR 11 Unmodified _THLLIQAQSPR_ 0 0 0 L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|44|2|sense L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|44|2|sense L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|44|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 632.3619995117188 2 632.362036 1262.70952 0.49674 0.00031412 -0.99336 -0.00062816 -0.49662 -0.00031405 632.3615531227861 92.156 0.15908 95.919 95.886 96.045 3.7629 62 22 3 0 0 0 0.65271 1 21938 21938 2.9952 0 1 2640300 43722 8531 27705 27717 50315 50315 0.08867268583003352 THLRRHCK 8 Unmodified _THLRRHCK_ 0 0 0 REV__ENSG00000198346|ENST00000396403|ZNF813 REV__ENSG00000198346|ENST00000396403|ZNF813 MULTI-MSMS UPN48_class_I_Rep_2 6 525.7891845703125 2 525.790527 1049.5665 0.38856 0.0002043 -1.3733 -0.00072208 -0.98476 -0.00051778 525.7897794154934 33.344 0.12883 37.005 36.923 37.052 3.6607 14 13 2 0 0 0 0.82752 1 5252 5252 2.5775 0 1 52797 + 43723 21121 27706 27718 50316 50316 0.04369982710795739 THLRTLIHWL 10 Unmodified _THLRTLIHWL_ 0 0 0 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 MSMS UPN46_class_I_Rep_3 1 645.378662109375 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 56.755 1 56.755 56.255 57.255 0 0 0 0 0.53105 1 12396 12396 1.4819 0 1 43724 16799 27707 27719 50317 50317 0.10760466687929693 THLRTLIHWL 10 Unmodified _THLRTLIHWL_ 0 0 0 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 MSMS UPN46_class_I_Rep_3 1 645.8250732421875 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 69.382 1 69.382 68.882 69.882 0 0 0 0 0.53105 1 15895 15895 1.4819 0 1 43725 16799 27707 27719 50318 50318 0.10760466687929693 THLRTLIHWL 10 Unmodified _THLRTLIHWL_ 0 0 0 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 MSMS UPN48_class_I_Rep_3 7 645.3782958984375 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 55.212 1 58.768 58.268 59.268 3.5554 0 0 0 0.53105 1 11682 11682 1.4819 0 1 43726 16799 27707 27719 50319 50319 0.10760466687929693 THLRTLIHWL 10 Unmodified _THLRTLIHWL_ 0 0 0 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1 MSMS UPN48_class_I_Rep_3 7 645.3321533203125 2 645.377489 1288.74043 NaN NaN NaN NaN NaN NaN NaN 60.79 1 64.303 63.803 64.803 3.5129 0 0 0 0.53105 1 13381 13381 1.4819 0 1 43727 16799 27707 27719 50320 50320 0.10760466687929693 THLSKRSI 8 Unmodified _THLSKRSI_ 0 0 0 REV__ENSG00000078403.17,MLLT10,chr10,+,I22.1,21681377,21682224|63|10.93|7|intron REV__ENSG00000078403.17,MLLT10,chr10,+,I22.1,21681377,21682224|63|10.93|7|intron MULTI-MSMS UPN48_class_I_Rep_3 7 471.2801513671875 2 471.279983 940.545414 0.23349 0.00011004 -0.20659 -9.7361E-05 0.026906 1.268E-05 471.2798350119452 83.363 0.87495 87.091 86.748 87.623 3.7281 157 111 2 0 0 0 0.82752 1 19828 19828 4.3292 0 1 224670 + 43728 17886 27708 27720 50321 50321 0.0727629588294576 THLSVTWYL 9 Unmodified _THLSVTWYL_ 0 0 0 ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 MULTI-MSMS UPN47_class_I_Rep_1 2 560.7968139648438 2 560.295299 1118.57605 0.35143 0.0001969 0.16667 9.3386E-05 0.5181 0.00029029 560.2949654682027 66.743 1.0697 70.101 69.596 70.666 3.3584 174 79 3 0 0 0 0.40174 1 16123 16123 7.9102 0 1 364070 43729 2841 27709 27721 50322 50322 0.021500294773204587 THLSVTWYL 9 Unmodified _THLSVTWYL_ 0 0 0 ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 MULTI-MSMS UPN47_class_I_Rep_2 3 560.79736328125 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.40174 1 16247 16247 7.9102 0 1 271980 43730 2841 27709 27721 50323 50323 0.021500294773204587 THLYKQLRI 9 Unmodified _THLYKQLRI_ 0 0 0 REV__L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|57|2|anti-sense REV__L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|57|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3511962890625 2 586.35094 1170.68733 0.51933 0.00030451 0.074444 4.365E-05 0.59377 0.00034816 586.3510033150944 64.713 0.47765 68.167 67.845 68.323 3.4541 52 36 2 0 0 0 0.32682 1 14649 14649 12.241 0 1 216350 + 43731 24723 27710 27722 50324 50324 0.10881088905284741 THPLFERSYF 10 Unmodified _THPLFERSYF_ 0 0 0 REV__MER21A_dup495|chr4:87019221-87020057:+|1.3549685402993716|0.0316003135608124|5.42|151.0|3|1|sense REV__MER21A_dup495|chr4:87019221-87020057:+|1.3549685402993716|0.0316003135608124|5.42|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 432.8851623535156 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 64.585 1 64.585 64.085 65.085 0 0 0 0 0.53105 1 14546 14546 0.69767 0 1 + 43732 31188 27711 27723 50325 50325 -0.006117980909493781 THPLLHLL 8 Unmodified _THPLLHLL_ 0 0 0 L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|80|1|anti-sense L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|80|1|anti-sense L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_3 7 472.2884521484375 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 105.93 1 109.63 109.13 110.13 3.702 0 0 0 0.40604 1 24991 24991 2.5775 0 1 43733 14885 27712 27724 50326 50326 0.09150671893701201 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.8038330078125 2 581.803823 1161.59309 0.37674 0.00021919 0.55821 0.00032477 0.93495 0.00054395 582.3057536188917 57.792 0.7504 61.229 60.863 61.614 3.437 86 51 3 0 0 0 0.38974 1 13315 13315 20.415 2.2682 1 138580 + 43734 31287 27713 27725 50327 50327 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.8038940429688 2 581.803823 1161.59309 0.51956 0.00030228 0.61457 0.00035756 1.1341 0.00065984 582.3057776401859 57.985 0.63538 61.276 61.034 61.669 3.2912 102 44 3 0 0 0 0.38974 4 13458 13391;13401;13415;13458 20.415 7.3721 1 149030 + 43735 31287 27713 27725 50328;50329;50330;50331 50331 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 582.3067016601562 2 581.803823 1161.59309 0.51956 0.00030228 0.61457 0.00035756 1.1341 0.00065984 582.3057776401859 57.985 0.63538 61.276 61.034 61.669 3.2912 102 44 3 0 0 0 0.84575 1 13415 13415 10.8 3.5103 1 149030 + 43736 31287 27713 27725 50332 50332 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.8040771484375 2 581.803823 1161.59309 0.34443 0.00020039 0.61441 0.00035747 0.95884 0.00055786 582.3055393152215 58.139 0.70961 61.307 61.049 61.758 3.1681 113 46 3 0 0 0 0.4561 5 13514 13474;13484;13514;13523;13565 15.248 5.8654 1 158810 + 43737 31287 27713 27725 50333;50334;50335;50336;50337 50335 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.8037109375 2 581.803823 1161.59309 0.52459 0.00030521 -0.17478 -0.00010169 0.34981 0.00020352 581.803609558695 58.18 0.82193 61.667 61.309 62.131 3.487 109 49 3 0 0 0 0.32646 5 12640 12596;12640;12681;12725;12768 26.268 26.268 1 406850 + 43738 31287 27713 27725 50338;50339;50340;50341;50342 50339 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.8041381835938 2 581.803823 1161.59309 0.57504 0.00033456 -0.095708 -5.5683E-05 0.47933 0.00027888 581.8036840835528 58.182 0.78367 61.681 61.293 62.077 3.4987 103 47 3 0 0 0 0.32646 6 12617 12551;12570;12617;12659;12700;12747 26.268 20.415 1 359000 + 43739 31287 27713 27725 50343;50344;50345;50346;50347;50348 50345 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.8040161132812 2 581.803823 1161.59309 0.42936 0.0002498 0.047748 2.778E-05 0.4771 0.00027758 581.8037784033268 58.031 0.81146 61.563 61.191 62.002 3.5317 117 54 3 0 0 0 0.32646 4 12515 12468;12515;12553;12596 26.268 26.268 1 421290 + 43740 31287 27713 27725 50349;50350;50351;50352 50350 0.018759500831492915 THPWNGLPIQ 10 Unmodified _THPWNGLPIQ_ 0 0 0 REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense REV__MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|47|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 581.803823 1161.59309 0.34443 0.00020039 0.61441 0.00035747 0.95884 0.00055786 582.3055393152215 58.139 0.70961 61.307 61.049 61.758 3.1681 -0.14688 0.00060329 NaN 26.268 113 46 3 NaN NaN NaN NaN 0 NaN NaN 0 158810 + 43741 31287 27713 27725 0.018759500831492915 THQKMTDFE 9 Unmodified _THQKMTDFE_ 0 0 0 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant MSMS UPN48_class_I_Rep_2 6 568.8168334960938 2 568.755681 1135.49681 NaN NaN NaN NaN NaN NaN NaN 35.47 1 39.158 38.658 39.658 3.6877 0 0 0 0.39518 1 5849 5849 1.8442 0 1 43742 543 27714 27726 50353 50353 -0.06551985539113048 THQRFPFLE 9 Unmodified _THQRFPFLE_ 0 0 0 nc|ENSG00000198075|O75897-2|SULT1C4;ENSG00000198075|ENST00000272452|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 MULTI-MSMS UPN48_class_I_Rep_2 6 587.8028564453125 2 587.803823 1173.59309 0.41026 0.00024115 0.25613 0.00015056 0.66639 0.00039171 587.8039710713384 43.157 1.528 46.919 46.496 48.024 3.7617 323 119 4 0 0 0 0.46869 1 8323 8323 3.9444 0 1 966840 43743 5407 27715 27727 50354 50354 0.013239500831332407 THRDGPKQET 10 Unmodified _THRDGPKQET_ 0 0 0 REV__L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|5|1|sense REV__L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 584.7891845703125 2 584.788901 1167.56325 NaN NaN NaN NaN NaN NaN NaN 13.95 1 17.484 16.984 17.984 3.5341 0 0 0 0.53105 1 338 338 1.1933 0.50296 1 + 43744 27511 27716 27728 50355 50355 -0.013830336528599219 THRFWTQY 8 Unmodified _THRFWTQY_ 0 0 0 REV__L1ME3B_dup8098|chr22:45821797-45822523:-|1.1918532753262188|0.0227747755050726|5.71|151.0|23|3|sense REV__L1ME3B_dup8098|chr22:45821797-45822523:-|1.1918532753262188|0.0227747755050726|5.71|151.0|23|3|sense MSMS UPN48_class_I_Rep_3 7 569.7725219726562 2 569.775065 1137.53558 NaN NaN NaN NaN NaN NaN NaN 39.81 1 43.465 42.965 43.965 3.6557 0 0 0 0.40625 1 7005 7005 2.3027 0 1 + 43745 28088 27717 27729 50356 50356 -0.02768892122435318 THRKGVPG 8 Unmodified _THRKGVPG_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-6|CDH23 REV__nc|ENSG00000107736|Q9H251-6|CDH23 MULTI-MSMS UPN46_class_I_Rep_3 1 426.2458801269531 2 426.245944 850.477334 0.10706 4.5635E-05 0.06134 2.6146E-05 0.1684 7.1781E-05 426.2459587693193 81.81 0.88867 81.81 81.383 82.272 0 198 85 3 0 0 0 0.82752 1 19249 19249 0.79363 0.10326 1 3196000 + 43746 18358 27718 27730 50357 50357 0.04611471022963087 THRKVRII 8 Unmodified _THRKVRII_ 0 0 0 REV__L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|103|2|sense REV__L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|103|2|sense MSMS UPN47_class_I_Rep_1 2 511.47174072265625 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 40.189 1 43.856 43.356 44.356 3.6668 0 0 0 0.40753 1 7942 7942 0.6015 0 1 + 43747 30181 27719 27731 50358 50358 0.1409225679924475 THRKVRII 8 Unmodified _THRKVRII_ 0 0 0 REV__L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|103|2|sense REV__L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|103|2|sense MSMS UPN47_class_I_Rep_3 4 511.83251953125 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 17.359 1 20.717 20.217 21.217 3.3581 0 0 0 0.40746 1 1257 1257 0.69038 0 1 + 43748 30181 27719 27731 50359 50359 0.1409225679924475 THRLWCTY 8 Unmodified _THRLWCTY_ 0 0 0 ENST00000335551.11_1_8:3000159-3019783:-|nuORF ENST00000335551.11_1_8:3000159-3019783:-|nuORF ENST00000335551.11_1_8:3000159-3019783:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.321533203125 2 540.258194 1078.50183 NaN NaN NaN NaN NaN NaN NaN 25.831 1 25.831 25.331 26.331 0 0 0 0 0.40738 1 3602 3602 0.79363 0 1 43749 6203 27720 27732 50360 50360 -0.03427636885840002 THRPTSVLTQ 10 Unmodified _THRPTSVLTQ_ 0 0 0 REV__MLT1G3_dup911|chr5:65557317-65557790:+|1.7132837954735294|0.1657336572570328|3.37|151.0|4|1|sense REV__MLT1G3_dup911|chr5:65557317-65557790:+|1.7132837954735294|0.1657336572570328|3.37|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 570.3101196289062 2 570.312012 1138.60947 NaN NaN NaN NaN NaN NaN NaN 28.322 1 32.064 31.564 32.564 3.7424 0 0 0 0.53105 1 3837 3837 1.4819 0 1 + 43750 31740 27721 27733 50361 50361 0.045710312492246885 THRQKIKVW 9 Unmodified _THRQKIKVW_ 0 0 0 L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|79|2|sense L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|79|2|sense L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|79|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 598.3568725585938 2 598.356557 1194.69856 0.51636 0.00030897 1.787 0.0010693 2.3034 0.0013782 598.3573745660327 53.138 0.45111 56.465 56.228 56.679 3.3266 45 25 2 0 0 0 0.47197 1 11914 11914 3.5965 0 1 67981 43751 9377 27722 27734 50362 50362 0.10899910999432905 THRSRKGR 8 Unmodified _THRSRKGR_ 0 0 0 REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense REV__Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|115|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 498.73687744140625 2 499.291748 996.568943 -0.31128 -0.00015542 1.3232 0.00066068 1.012 0.00050526 499.2930896043434 18.895 0.25067 22.476 22.412 22.663 3.5806 42 31 2 0 0 0 0.72333 1 1676 1676 0 0 1 19733 + 43752 32648 27723 27735 50363 50363 0.07052154440145841 THRWELNNK 9 Unmodified _THRWELNNK_ 0 0 0 L1PA5_dup5927|chr8:120638406-120641024:-|3.561568471199229|0.0980385469980961|5.18|151.0|21|1|sense;L1PA3_dup1607|chr3:14967731-14969145:+|1.6404528665644178|0.2313779611576089|2.83|151.0|41|3|sense;L1PA3_dup8408|chr12:26669558-26675709:+|1.8567229224142128|0.1009279372125444|4.2|151.0|178|3|sense;L1PA4_dup10609|chr15:51590947-51597084:+|1.8734132440726263|0.0668992513471707|4.81|151.0|62|1|sense;L1PA5_dup8995|chr12:100010760-100016815:+|1.105474032884794|0.1022182611460724|3.43|150.0|167|3|sense L1PA5_dup5927|chr8:120638406-120641024:-|3.561568471199229|0.0980385469980961|5.18|151.0|21|1|sense L1PA5_dup5927|chr8:120638406-120641024:-|3.561568471199229|0.0980385469980961|5.18|151.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 599.3092651367188 2 599.309803 1196.60505 NaN NaN NaN NaN NaN NaN NaN 64.339 1 64.339 63.839 64.839 0 0 0 0 0.3967 1 14476 14476 1.4819 0 1 43753 14232 27724 27736 50364 50364 0.014615668263104453 THSFEGFCNY 10 Unmodified _THSFEGFCNY_ 0 0 0 REV__L1PA16_dup12895|chr18:13107899-13108644:+|1.5505688389364087|0.1523990945142583|3.35|151.0|38|2|anti-sense REV__L1PA16_dup12895|chr18:13107899-13108644:+|1.5505688389364087|0.1523990945142583|3.35|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_1 5 602.6758422851562 2 602.740031 1203.46551 NaN NaN NaN NaN NaN NaN NaN 115.41 1 119.03 118.53 119.53 3.6282 0 0 0 0.53105 1 28074 28074 1.6526 0.17072 1 + 43754 29353 27725 27737 50365 50365 -0.12808558573192386 THSFGRWVDP 10 Unmodified _THSFGRWVDP_ 0 0 0 REV__MER21B_dup30|chr1:28942103-28942946:-|1.7132837954735294|0.0162803087889728|6.72|151.0|47|3|anti-sense REV__MER21B_dup30|chr1:28942103-28942946:-|1.7132837954735294|0.0162803087889728|6.72|151.0|47|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 601.2906494140625 2 601.291079 1200.56761 0.54895 0.00033008 -0.11916 -7.165E-05 0.42979 0.00025843 601.2908667724422 47.181 0.67265 47.181 46.819 47.492 0 154 66 3 0 0 0 0.52083 1 9789 9789 9.3831 0 1 461520 + 43755 31210 27726 27738 50366 50366 -0.024655244392761233 THSGPQLH 8 Unmodified _THSGPQLH_ 0 0 0 ENST00000331768.9_1_14:99864104-99864326:-|nuORF ENST00000331768.9_1_14:99864104-99864326:-|nuORF ENST00000331768.9_1_14:99864104-99864326:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 438.7198181152344 2 438.719759 875.424964 -0.49566 -0.00021746 0.19696 8.6408E-05 -0.29871 -0.00013105 438.71987687150596 46.187 0.51368 49.54 49.315 49.829 3.3534 47 34 2 0 0 0 0.82752 1 9813 9813 2.3027 0 1 66115 43756 6192 27727 27739 50367 50367 -0.017731121106635328 THSGPQLH 8 Unmodified _THSGPQLH_ 0 0 0 ENST00000331768.9_1_14:99864104-99864326:-|nuORF ENST00000331768.9_1_14:99864104-99864326:-|nuORF ENST00000331768.9_1_14:99864104-99864326:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 438.719759 875.424964 -0.52186 -0.00022895 0.090733 3.9806E-05 -0.43113 -0.00018915 438.71988543274904 46.229 0.43681 49.473 49.293 49.73 3.2441 -0.033885 -4.1574E-05 NaN 2.3027 38 28 2 NaN NaN NaN NaN 0 NaN NaN 0 58974 43757 6192 27727 27739 -0.017731121106635328 THSLETAECE 10 Unmodified _THSLETAECE_ 0 0 0 REV__L1ME3A_dup4195|chr4:109497567-109497958:-|1.09844878631609|0.0725978285499316|3.92|150.0|1|1|sense REV__L1ME3A_dup4195|chr4:109497567-109497958:-|1.09844878631609|0.0725978285499316|3.92|150.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 560.2341918945312 2 560.234778 1118.455 NaN NaN NaN NaN NaN NaN NaN 44.181 1 47.425 46.925 47.925 3.2441 0 0 0 0.53105 1 9240 9240 1.4819 0 1 + 43758 28017 27728 27740 50368 50368 -0.09948586018322203 THSRHVIL 8 Unmodified _THSRHVIL_ 0 0 0 L1MB3_dup8962|chr9:137733677-137735605:+|5.855528483377241|0.180526941475154|5.02|151.0|14|1|sense L1MB3_dup8962|chr9:137733677-137735605:+|5.855528483377241|0.180526941475154|5.02|151.0|14|1|sense L1MB3_dup8962|chr9:137733677-137735605:+|5.855528483377241|0.180526941475154|5.02|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 481.7793884277344 2 481.780151 961.545748 -0.64215 -0.00030937 0.063048 3.0375E-05 -0.5791 -0.000279 481.78005874706395 22.293 0.77921 25.642 25.31 26.09 3.3496 93 70 2 0 0 0 0.82752 1 2582 2582 0.79363 0 1 67441 43759 10466 27729 27741 50369 50369 0.06343715602815791 THTGVQWY 8 Unmodified _THTGVQWY_ 0 0 0 AluSz_dup93213|chr19:11927077-11927369:+|1.3382183763468345|0.1040285457729621|3.69|151.0|14|1|anti-sense AluSz_dup93213|chr19:11927077-11927369:+|1.3382183763468345|0.1040285457729621|3.69|151.0|14|1|anti-sense AluSz_dup93213|chr19:11927077-11927369:+|1.3382183763468345|0.1040285457729621|3.69|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_3 4 496.23480224609375 2 496.235242 990.45593 NaN NaN NaN NaN NaN NaN NaN 30.991 1 34.303 33.803 34.803 3.3116 0 0 0 0.40625 1 5223 5223 2.3027 0 1 43760 370 27730 27742 50370 50370 -0.03967958796431503 THTHTLLYI 9 Unmodified _THTHTLLYI_ 0 0 0 L1MC4_dup10862|chr7:96702095-96702613:+|1.3622020739965253|0.2001821924966004|2.77|151.0|6|2|sense L1MC4_dup10862|chr7:96702095-96702613:+|1.3622020739965253|0.2001821924966004|2.77|151.0|6|2|sense L1MC4_dup10862|chr7:96702095-96702613:+|1.3622020739965253|0.2001821924966004|2.77|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 549.8035888671875 2 549.800749 1097.58694 NaN NaN NaN NaN NaN NaN NaN 100.09 1 103.89 103.39 104.39 3.7942 0 0 0 0.39428 1 24751 24751 2.0598 0.40713 1 43761 11396 27731 27743 50371 50371 0.04205431851596586 THTRKHVI 8 Unmodified _THTRKHVI_ 0 0 0 REV__ENSG00000270011|ENST00000541595|ZNF559-ZNF177 REV__ENSG00000270011|ENST00000541595|ZNF559-ZNF177 MULTI-MSMS UPN47_class_I_Rep_1 2 496.29278564453125 2 496.293425 990.572297 -0.34259 -0.00017002 -0.42004 -0.00020846 -0.76263 -0.00037849 496.2931815803873 14.775 0.25996 18.25 18.151 18.411 3.475 42 27 2 0 0 0 0.82752 1 678 678 0.79363 0 1 34228 + 43762 20976 27732 27744 50372 50372 0.0766340449412155 THTTHQNYM 9 Unmodified _THTTHQNYM_ 0 0 0 L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|2|1|sense L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|2|1|sense L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.7452392578125 2 566.745647 1131.47674 0.35905 0.00020349 0.046777 2.651E-05 0.40583 0.00023 566.7457175302989 59.9 0.61845 63.065 62.624 63.243 3.1651 52 42 2 0 0 0 0.49026 1 14047 14047 1.6526 0 1 117250 43763 13297 27733 27745 50373 50373 -0.08373736479074978 THTWHLYF 8 Unmodified _THTWHLYF_ 0 0 0 L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7666625976562 2 552.766709 1103.51886 0.48631 0.00026882 1.6356 0.00090409 2.1219 0.0011729 552.7674563578937 86.856 0.08725 90.493 90.48 90.567 3.6372 15 9 2 0 0 0 0.82752 1 21706 21706 19.439 0 1 232450 43764 11462 27734 27746 50374 50374 -0.028753930083894375 THTWHLYF 8 Unmodified _THTWHLYF_ 0 0 0 L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.7670288085938 2 552.766709 1103.51886 0.48925 0.00027044 1.3503 0.00074639 1.8395 0.0010168 552.7674363326141 87.345 0.33097 90.982 90.9 91.231 3.6372 50 38 2 0 0 0 0.82752 3 21825 21825;21830;21864 26.341 3.1929 1 70479 43765 11462 27734 27746 50375;50376;50377 50375 -0.028753930083894375 THTWHLYF 8 Unmodified _THTWHLYF_ 0 0 0 L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.9259033203125 2 552.766709 1103.51886 NaN NaN NaN NaN NaN NaN NaN 86.846 1 90.287 89.787 90.787 3.4407 0 0 0 0.36148 1 21595 21595 19.439 0 1 43766 11462 27734 27746 50378 50378 -0.028753930083894375 THTWHLYF 8 Unmodified _THTWHLYF_ 0 0 0 L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7680053710938 2 552.766709 1103.51886 NaN NaN NaN NaN NaN NaN NaN 87.119 1 90.56 90.06 91.06 3.4407 0 0 0 0.28556 1 21657 21657 34.187 0 1 43767 11462 27734 27746 50379 50379 -0.028753930083894375 THTWHLYF 8 Unmodified _THTWHLYF_ 0 0 0 L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7669677734375 2 552.766709 1103.51886 NaN NaN NaN NaN NaN NaN NaN 87.24 1 90.68 90.18 91.18 3.4407 0 0 0 0.28556 1 21685 21685 34.187 0 1 43768 11462 27734 27746 50380 50380 -0.028753930083894375 THTWHLYF 8 Unmodified _THTWHLYF_ 0 0 0 L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense L1MC4_dup2204|chr2:32484911-32485400:-|1.1376791001130933|0.0423724925087076|4.75|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7669067382812 2 552.766709 1103.51886 NaN NaN NaN NaN NaN NaN NaN 87.607 1 91.054 90.554 91.554 3.4471 0 0 0 0.33253 1 21777 21777 26.341 0 1 43769 11462 27734 27746 50381 50381 -0.028753930083894375 THVFLNDSVPV 11 Unmodified _THVFLNDSVPV_ 0 0 0 REV__THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|84|3|anti-sense REV__THE1D-int_dup945|chr6:38525438-38526993:+|1.0563984735042058|0.021734779386041|5.6|151.0|84|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 616.2997436523438 2 614.322045 1226.62954 0.41201 0.00025311 -0.19597 -0.00012039 0.21605 0.00013272 614.3218788278547 62.616 1.0112 65.786 65.297 66.308 3.1698 157 61 4 0 0 0 0.67264 1 14790 14790 1.1933 1.1933 1 850450 + 43770 32317 27735 27747 50382 50382 0.025287821891879503 THVSLNLKVGK 11 Unmodified _THVSLNLKVGK_ 0 0 0 L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|42|3|sense L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|42|3|sense L1PA11_dup3572|chr14:96354129-96355444:-|1.561794934997509|0.3414171740628199|2.19|151.0|42|3|sense MSMS UPN48_class_I_Rep_1 5 598.3594360351562 2 598.361505 1194.70846 NaN NaN NaN NaN NaN NaN NaN 81.632 1 85.205 84.705 85.705 3.5726 0 0 0 0.38417 1 19472 19472 1.1933 0.66858 1 43771 13676 27736 27748 50383 50383 0.11889054214111638 THWFGHHASLT 11 Unmodified _THWFGHHASLT_ 0 0 0 REV__L1MC5_dup10188|chr11:78398707-78399115:+|2.0323838852759946|0.0068653017513608|8.21|150.0|10|3|sense REV__L1MC5_dup10188|chr11:78398707-78399115:+|2.0323838852759946|0.0068653017513608|8.21|150.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 647.3101196289062 2 647.309803 1292.60505 NaN NaN NaN NaN NaN NaN NaN 26.178 1 29.811 29.311 30.311 3.6332 0 0 0 0.38417 1 3299 3299 1.1933 0 1 + 43772 27051 27737 27749 50384 50384 -0.029544331736815366 THYFFPVN 8 Unmodified _THYFFPVN_ 0 0 0 ENST00000373910.8_1_10:60128985-60129048:+|nuORF ENST00000373910.8_1_10:60128985-60129048:+|nuORF ENST00000373910.8_1_10:60128985-60129048:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 512.7484741210938 2 512.747985 1023.48142 0.28726 0.00014729 -0.05816 -2.9821E-05 0.2291 0.00011747 512.747855059191 75.38 0.65306 78.627 78.333 78.986 3.2464 102 59 2 0 0 0 0.82752 1 18641 18641 4.756 1.7608 1 184570 43773 6421 27738 27750 50385 50385 -0.02938484274000075 THYFGQYGHF 10 Unmodified _THYFGQYGHF_ 0 0 0 L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|201|1|anti-sense L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|201|1|anti-sense L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|201|1|anti-sense MSMS UPN47_class_I_Rep_1 2 628.778076171875 2 628.777805 1255.54106 NaN NaN NaN NaN NaN NaN NaN 48.449 1 52.131 51.631 52.631 3.6819 0 0 0 0.53105 1 10452 10452 1.6526 0.45928 1 43774 14869 27739 27751 50386 50386 -0.07649213330614657 THYFIGSSLL 10 Unmodified _THYFIGSSLL_ 0 0 0 REV__L1MEc_dup18062|chr21:43901787-43902372:+|1.0067487401797952|0.0147384489371655|6.09|151.0|26|1|anti-sense REV__L1MEc_dup18062|chr21:43901787-43902372:+|1.0067487401797952|0.0147384489371655|6.09|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.3006591796875 2 569.300581 1136.58661 NaN NaN NaN NaN NaN NaN NaN 57.067 1 60.609 60.109 61.109 3.5427 0 0 0 0.53105 1 12243 12243 1.6526 0 1 + 43775 28418 27740 27752 50387 50387 0.023780121317713565 THYIRARF 8 Unmodified _THYIRARF_ 0 0 0 REV__HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|39|2|anti-sense REV__HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|39|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 532.8087158203125 2 532.293425 1062.5723 0.31636 0.0001684 3.5371 0.0018828 3.8535 0.0020512 532.2952578098335 61.043 0.051983 64.308 64.28 64.332 3.2654 6 4 2 0 0 0 0.72333 1 14314 14314 9.3474 1.4373 1 67454 + 43776 23597 27741 27753 50388 50388 0.04351404494127564 THYLGYISR 9 Unmodified _THYLGYISR_ 0 0 0 REV__MSTA-int_dup1731|chr9:137702199-137703857:-|2.2608665983884952|0.0319522623779748|6.14|151.0|28|2|sense REV__MSTA-int_dup1731|chr9:137702199-137703857:-|2.2608665983884952|0.0319522623779748|6.14|151.0|28|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 555.2906494140625 2 555.290548 1108.56654 -0.18668 -0.00010366 -0.58937 -0.00032727 -0.77605 -0.00043093 555.2902046981749 12.644 0.27439 12.644 12.553 12.828 0 34 22 2 0 0 0 0.47197 1 154 154 3.5965 1.2938 1 64430 + 43777 31868 27742 27754 50389 50389 0.01660261191796053 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 524.8056030273438 2 524.8055 1047.59645 0.40188 0.00021091 -0.54958 -0.00028842 -0.14769 -7.7511E-05 524.8050789329291 64.681 0.83101 68.135 67.809 68.64 3.4541 100 65 2 0 0 0 0.088679 7 14674 14590;14632;14674;14711;14749;14777;14793 36.506 13.77 1 340860 43778 1447 27743 27755 50390;50391;50392;50393;50394;50395;50396 50392 0.07455200137110296 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 524.8056640625 2 524.8055 1047.59645 0.42623 0.00022369 -0.39678 -0.00020823 0.029447 1.5454E-05 524.805154147834 64.438 0.87363 67.913 67.679 68.552 3.4743 98 65 2 0 0 0 0.073198 5 14631 14504;14552;14594;14631;14670 40.239 16.449 1 351090 43779 1447 27743 27755 50397;50398;50399;50400;50401 50400 0.07455200137110296 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENST00000594807.5_1_19:14640508-14674579:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 524.8057250976562 2 524.8055 1047.59645 0.46324 0.00024311 -0.5432 -0.00028507 -0.079959 -4.1963E-05 524.8050931221437 64.434 0.79734 67.943 67.605 68.402 3.5083 131 69 2 0 0 0 0.062142 5 14436 14398;14436;14477;14520;14560 43.772 14.691 1 300760 43780 1447 27743 27755 50402;50403;50404;50405;50406 50403 0.07455200137110296 TIAELEPM 8 Unmodified _TIAELEPM_ 0 0 0 ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1 ENSG00000101842|ENST00000217957|VSIG1 ENSG00000101842|ENST00000217957|VSIG1 MULTI-MSMS UPN47_class_I_Rep_1 2 452.228271484375 2 452.228236 902.44192 0.18528 8.3788E-05 0.26784 0.00012112 0.45311 0.00020491 452.22819554620474 96.625 0.99563 100.4 100.1 101.1 3.7767 285 136 3 0 0 0 0.82752 1 24016 24016 2.5775 0 1 2865900 43781 1588 27744 27756 50407 50407 -0.013203723397396061 TIAELEPM 8 Unmodified _TIAELEPM_ 0 0 0 ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1 ENSG00000101842|ENST00000217957|VSIG1 ENSG00000101842|ENST00000217957|VSIG1 MULTI-MSMS UPN48_class_I_Rep_1 5 452.228271484375 2 452.228236 902.44192 0.012755 5.7681E-06 0.38899 0.00017591 0.40175 0.00018168 452.2282632366543 96.594 0.9706 100.21 99.767 100.74 3.6124 272 116 3 0 0 0 0.82752 1 23313 23313 2.5775 0 1 2282000 43782 1588 27744 27756 50408 50408 -0.013203723397396061 TIAKTLVLD 9 Unmodified _TIAKTLVLD_ 0 0 0 REV__Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|11|3|sense REV__Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 487.2999572753906 2 487.30005 972.585547 NaN NaN NaN NaN NaN NaN NaN 61.911 1 65.078 64.578 65.578 3.1667 0 0 0 0.38639 1 14640 14640 3.9444 1.3669 1 + 43783 17397 27745 27757 50409 50409 0.09815797762848888 TIATALEYVYK 11 Unmodified _TIATALEYVYK_ 0 0 0 ENST00000549147.1_1_12:56113198-56113390:+|nuORF;nc|ENSG00000135441|P78537-2|BLOC1S1;ENSG00000135441|ENST00000548925|BLOC1S1 ENST00000549147.1_1_12:56113198-56113390:+|nuORF ENST00000549147.1_1_12:56113198-56113390:+|nuORF MSMS UPN48_class_I_Rep_1 5 636.3468017578125 2 636.347729 1270.6809 NaN NaN NaN NaN NaN NaN NaN 62.396 1 65.859 65.359 66.359 3.4625 0 0 0 0.38417 1 13961 13961 2.086 0.60411 1 43784 2910 27746 27758 50410 50410 0.05639106163221186 TICWCRFP 8 Unmodified _TICWCRFP_ 0 0 0 L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|92|3|anti-sense L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|92|3|anti-sense L1PB1_dup6200|chr7:156877899-156879382:+|1.6934209025473768|0.030578892558963|5.79|151.0|92|3|anti-sense MSMS UPN47_class_I_Rep_3 4 513.23828125 2 513.238415 1024.46228 NaN NaN NaN NaN NaN NaN NaN 24.23 1 27.581 27.081 28.081 3.3509 0 0 0 0.40746 1 3216 3216 0.69038 0 1 43785 15168 27747 27759 50411 50411 -0.048974801609347196 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 491.25006103515625 2 491.250026 980.485499 0.23523 0.00011556 0.18797 9.2339E-05 0.4232 0.0002079 491.2500007311715 88.53 0.33167 92.187 91.907 92.239 3.6563 93 42 3 0 0 0 0.82752 1 22129 22129 64.236 28.192 1 440160 43786 3334 27748 27760 50412 50412 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 491.25006103515625 2 491.250026 980.485499 0.23638 0.00011612 -0.062303 -3.0606E-05 0.17408 8.5517E-05 491.2498906473294 88.701 0.2068 92.357 92.212 92.419 3.6563 63 24 3 0 0 0 0.82752 2 22157 22157;22186 71.134 29.039 1 559670 43787 3334 27748 27760 50413;50414 50413 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 491.2500915527344 2 491.250026 980.485499 0.23766 0.00011675 -0.051301 -2.5202E-05 0.18635 9.1547E-05 491.24988248230636 88.855 0.35411 92.512 92.419 92.773 3.6563 82 47 3 0 0 0 0.82752 1 22216 22216 57.471 27.247 1 328130 43788 3334 27748 27760 50415 50415 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MSMS UPN47_class_I_Rep_1 2 491.2500915527344 2 491.250026 980.485499 NaN NaN NaN NaN NaN NaN NaN 89.053 1 92.727 92.227 93.227 3.6738 0 0 0 0.0003565 1 22263 22263 60.39 25.988 1 43789 3334 27748 27760 50416 50416 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 491.2499694824219 2 491.250026 980.485499 0.43595 0.00021416 -0.15653 -7.6897E-05 0.27942 0.00013726 491.249846735318 88.789 0.91707 92.241 91.817 92.734 3.4525 287 126 3 0 0 0 0.82752 4 22029 22029;22053;22083;22113 81.613 33.577 1 563510 43790 3334 27748 27760 50417;50418;50419;50420 50417 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 491.2500915527344 2 491.250026 980.485499 0.25202 0.00012381 -0.021593 -1.0607E-05 0.23043 0.0001132 491.2499689107228 88.803 0.15359 92.196 92.143 92.297 3.3931 38 19 2 0 0 0 0.82752 1 22269 22269 50.855 26.181 1 453950 43791 3334 27748 27760 50421 50421 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 491.2499694824219 2 491.250026 980.485499 0.25269 0.00012414 0.010331 5.0753E-06 0.26303 0.00012921 491.2499399168623 89.041 0.24924 92.434 92.297 92.546 3.3931 60 30 2 0 0 0 0.82752 2 22303 22303;22334 50.855 19.733 1 507370 43792 3334 27748 27760 50422;50423 50422 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 491.250026 980.485499 0.44121 0.00021674 -0.25882 -0.00012715 0.18239 8.9598E-05 491.24979903442267 89.312 0.12653 92.765 92.734 92.86 3.4525 0.11141 -0.00016054 NaN 57.471 24 16 3 NaN NaN NaN NaN 0 NaN NaN 0 81593 43793 3334 27748 27760 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 491.250026 980.485499 0.2537 0.00012463 -0.5167 -0.00025383 -0.263 -0.0001292 491.2496348035675 89.291 0.11792 92.684 92.643 92.761 3.3931 0.030242 -0.0004139 NaN 57.471 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 100190 43794 3334 27748 27760 -0.005524395709471719 TIDFPEFL 8 Unmodified _TIDFPEFL_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000442082.2_1_X:94754743-94754860:+|nuORF;ENST00000428512.1_1_10:71923591-71923807:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 491.250026 980.485499 0.25344 0.0001245 0.017872 8.7799E-06 0.27132 0.00013328 491.24991727996724 89.203 0.09697 92.596 92.546 92.643 3.3931 0.11973 6.7581E-05 NaN 71.134 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 160020 43795 3334 27748 27760 -0.005524395709471719 TIDKEKLQY 9 Unmodified _TIDKEKLQY_ 0 0 0 REV__L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|6|1|sense REV__L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.3110961914062 2 569.311146 1136.60774 0.088488 5.0377E-05 -0.15916 -9.0613E-05 -0.070674 -4.0236E-05 569.3108762155424 45.163 0.49798 48.863 48.627 49.125 3.6999 52 29 2 0 0 0 0.37599 1 9515 9515 9.3831 1.2276 1 100620 + 43796 24742 27749 27761 50424 50424 0.04489977440630355 TIDKEKLQY 9 Unmodified _TIDKEKLQY_ 0 0 0 REV__L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|6|1|sense REV__L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 569.311146 1136.60774 0.22853 0.0001301 -0.46715 -0.00026596 -0.23863 -0.00013585 569.3107684181017 45.511 0.44376 48.864 48.634 49.077 3.3534 -0.0022943 -0.00015111 NaN 9.3831 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 110410 + 43797 24742 27749 27761 0.04489977440630355 TIDKEKLQY 9 Unmodified _TIDKEKLQY_ 0 0 0 REV__L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|6|1|sense REV__L1M8_dup1607|chr20:47544499-47545174:-|1.2594246853580433|0.0054890761095587|7.84|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 569.311146 1136.60774 0.25018 0.00014243 -0.44825 -0.00025519 -0.19807 -0.00011276 569.3107560479746 45.629 0.54872 48.873 48.558 49.106 3.2441 0.0064713 -0.00012959 NaN 9.3831 57 34 2 NaN NaN NaN NaN 0 NaN NaN 0 95684 + 43798 24742 27749 27761 0.04489977440630355 TIDKGLILI 9 Unmodified _TIDKGLILI_ 0 0 0 REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|24|1|sense REV__L1PB1_dup9875|chr12:11219356-11223327:+|3.5311301353256352|0.0338874805514906|6.7|151.0|24|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.3182373046875 2 493.318243 984.621933 0.26966 0.00013303 0.0072945 3.5985E-06 0.27696 0.00013663 493.31816554953997 69.548 1.0931 73.069 72.684 73.777 3.5216 230 93 4 0 0 0 0.097406 1 16160 16160 34.402 3.1334 1 1458100 + 43799 30509 27750 27762 50425 50425 0.12900674659567812 TIDKTTPH 8 Unmodified _TIDKTTPH_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS UPN46_class_I_Rep_3 1 456.7425842285156 2 456.742899 911.471246 0.1857 8.4819E-05 -0.50278 -0.00022964 -0.31707 -0.00014482 456.7426175985999 42.802 0.49042 42.802 42.584 43.075 0 63 46 2 0 0 0 0.82752 1 8485 8485 15.847 0 1 185810 + 43800 19512 27751 27763 50426 50426 0.011969080007474986 TIDKTTPH 8 Unmodified _TIDKTTPH_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 456.742899 911.471246 0.1857 8.4819E-05 -0.50278 -0.00022964 -0.31707 -0.00014482 456.7426175985999 42.802 0.49042 42.802 42.584 43.075 0 0 0 NaN 15.847 63 46 2 NaN NaN NaN NaN 0 NaN NaN 0 185810 + 43801 19512 27751 27763 0.011969080007474986 TIDNHIIS 8 Unmodified _TIDNHIIS_ 0 0 0 REV__L1ME3Cz_dup5295|chr7:77945681-77946608:+|2.399882999763457|0.4714377349622712|2.35|151.0|10|1|sense REV__L1ME3Cz_dup5295|chr7:77945681-77946608:+|2.399882999763457|0.4714377349622712|2.35|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.74261474609375 2 456.742899 911.471246 -0.66702 -0.00030466 0.25389 0.00011596 -0.41313 -0.00018869 456.7429284918683 38.639 0.72149 41.88 41.62 42.341 3.2414 100 54 2 0 0 0 0.82752 1 7578 7578 19.257 3.4098 1 153770 + 43802 28125 27752 27764 50427 50427 0.01196908000770236 TIDQLYLEY 9 Unmodified _TIDQLYLEY_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS UPN47_class_I_Rep_2 3 579.2909545898438 2 579.289879 1156.56521 0.43027 0.00024925 0.63092 0.00036548 1.0612 0.00061473 579.2903894928722 72.375 1.1853 75.672 75.293 76.478 3.2971 232 105 3 0 0 0 0.025281 2 17684 17684;17848 60.074 12.325 1 639280 43803 1096 27753 27765 50428;50429 50428 -0.006814176876332567 TIDQLYLEY 9 Unmodified _TIDQLYLEY_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS UPN47_class_I_Rep_3 4 579.2903442382812 2 579.289879 1156.56521 0.45286 0.00026234 0.63103 0.00036555 1.0839 0.00062789 579.2903423794422 72.382 1.0268 75.61 75.097 76.124 3.2271 190 90 3 0 0 0 0.0060665 4 17834 17755;17797;17834;17918 90.135 31.456 1 700710 43804 1096 27753 27765 50430;50431;50432;50433 50432 -0.006814176876332567 TIDQLYLEY 9 Unmodified _TIDQLYLEY_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 579.289879 1156.56521 0.35969 0.00020837 1.0722 0.00062114 1.4319 0.0008295 579.2906955534417 72.24 1.5181 75.62 74.968 76.486 3.3799 -0.013773 0.00040899 NaN 90.135 214 116 3 NaN NaN NaN NaN 0 NaN NaN 0 622610 43805 1096 27753 27765 -0.006814176876332567 TIEEKESIY 9 Unmodified _TIEEKESIY_ 0 0 0 REV__L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|14|3|sense REV__L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|14|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.7803344726562 2 556.279512 1110.54447 0.045641 2.5389E-05 -0.30926 -0.00017204 -0.26362 -0.00014665 556.2793473007197 34.969 0.5209 38.394 38.124 38.644 3.4253 64 38 2 0 0 0 0.26468 2 6431 6371;6431 16.149 0 1 83227 + 43806 28046 27754 27766 50434;50435 50435 -0.006380080672670374 TIEFHEHEP 9 Unmodified _TIEFHEHEP_ 0 0 0 ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|129|3|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|129|3|anti-sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|129|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 570.26708984375 2 569.76182 1137.50909 0.45509 0.00025929 2.8222 0.001608 3.2773 0.0018673 570.266222045043 79.661 0.41182 79.661 79.485 79.897 0 66 37 3 0 0 0 0.12281 1 18775 18775 4.3292 0.73274 1 150460 43807 7732 27755 27767 50436 50436 -0.05416625804423347 TIEICIWRH 9 Unmodified _TIEICIWRH_ 0 0 0 REV__L1MB3_dup2836|chr3:11412414-11413997:-|1.4441178285443876|0.0056575941022626|8.0|151.0|64|1|anti-sense REV__L1MB3_dup2836|chr3:11412414-11413997:-|1.4441178285443876|0.0056575941022626|8.0|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_1 5 585.8073120117188 2 585.808051 1169.60155 NaN NaN NaN NaN NaN NaN NaN 32.762 1 36.289 35.789 36.789 3.5266 0 0 0 0.39518 1 5022 5022 1.8442 0 1 + 43808 25870 27756 27768 50437 50437 0.023531807280960493 TIEICIWRH 9 Unmodified _TIEICIWRH_ 0 0 0 REV__L1MB3_dup2836|chr3:11412414-11413997:-|1.4441178285443876|0.0056575941022626|8.0|151.0|64|1|anti-sense REV__L1MB3_dup2836|chr3:11412414-11413997:-|1.4441178285443876|0.0056575941022626|8.0|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_3 7 585.8063354492188 2 585.808051 1169.60155 NaN NaN NaN NaN NaN NaN NaN 32.545 1 36.235 35.735 36.735 3.6896 0 0 0 0.39518 1 4960 4960 1.8442 0 1 + 43809 25870 27756 27768 50438 50438 0.023531807280960493 TIEKLLPE 8 Unmodified _TIEKLLPE_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|3|1|sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.7946472167969 2 471.778951 941.543348 -0.010244 -4.833E-06 -3.3088 -0.001561 -3.319 -0.0015659 471.77946250771936 67.364 0.045113 70.556 70.52 70.566 3.1914 4 2 2 0 0 0 0.82752 1 16302 16302 8.5933 0 1 21068 + 43810 30322 27757 27769 50439 50439 0.07023822354472031 TIEKLLPE 8 Unmodified _TIEKLLPE_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|3|1|sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 471.778951 941.543348 -0.010244 -4.833E-06 -3.3088 -0.001561 -3.319 -0.0015659 471.77946250771936 67.364 0.045113 70.556 70.52 70.566 3.1914 0 0 NaN 8.5933 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 21068 + 43811 30322 27757 27769 0.07023822354472031 TIEKRYSFQ 9 Unmodified _TIEKRYSFQ_ 0 0 0 L1MC1_dup5608|chr6:142206020-142206982:+|1.4645159655989155|0.0432880656067067|5.08|151.0|7|1|sense L1MC1_dup5608|chr6:142206020-142206982:+|1.4645159655989155|0.0432880656067067|5.08|151.0|7|1|sense L1MC1_dup5608|chr6:142206020-142206982:+|1.4645159655989155|0.0432880656067067|5.08|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 586.3090209960938 2 586.308938 1170.60332 NaN NaN NaN NaN NaN NaN NaN 32.597 1 36.123 35.623 36.623 3.5266 0 0 0 0.4007 1 4975 4975 0.52476 0 1 43812 11164 27758 27770 50440 50440 0.024845130177027386 TIELTTFVE 9 Unmodified _TIELTTFVE_ 0 0 0 REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 526.779541015625 2 526.779148 1051.54374 0.35292 0.00018591 0.97607 0.00051417 1.329 0.00070009 526.7796143338905 56.085 0.5261 59.64 59.452 59.979 3.5554 73 45 2 0 0 0 0.13631 1 11950 11950 26.884 3.7352 1 171570 + 43813 21096 27759 27771 50441 50441 0.020031972836477507 TIELWGYEE 9 Unmodified _TIELWGYEE_ 0 0 0 ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2 ENST00000463101.1_1_22:24579934-24582448:+|nuORF ENST00000463101.1_1_22:24579934-24582448:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 570.2659912109375 2 570.266404 1138.51826 0.42262 0.00024101 0.5541 0.00031598 0.97672 0.00055699 570.768135481724 71.68 0.48638 74.97 74.666 75.153 3.2899 52 38 2 0 0 0 0.46434 1 17543 17543 4.3292 0.38484 1 76487 43814 1459 27760 27772 50442 50442 -0.045462772387509176 TIELWGYEE 9 Unmodified _TIELWGYEE_ 0 0 0 ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2 ENST00000463101.1_1_22:24579934-24582448:+|nuORF ENST00000463101.1_1_22:24579934-24582448:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 570.2670288085938 2 570.266404 1138.51826 0.43682 0.0002491 0.52494 0.00029936 0.96176 0.00054846 570.2669682241028 73.144 0.59716 76.441 76.12 76.717 3.2971 58 47 2 0 0 0 0.20276 1 17984 17984 20.454 0 1 51699 43815 1459 27760 27772 50443 50443 -0.045462772387509176 TIELWGYEE 9 Unmodified _TIELWGYEE_ 0 0 0 ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2 ENST00000463101.1_1_22:24579934-24582448:+|nuORF ENST00000463101.1_1_22:24579934-24582448:+|nuORF MSMS UPN47_class_I_Rep_3 4 570.2679443359375 2 570.266404 1138.51826 NaN NaN NaN NaN NaN NaN NaN 71.618 1 74.837 74.337 75.337 3.2188 0 0 0 0.38478 1 17583 17583 4.3292 0 1 43816 1459 27760 27772 50444 50444 -0.045462772387509176 TIENQEEL 8 Unmodified _TIENQEEL_ 0 0 0 chr4:103151377-103153047|147|13.83|0.77|4.17|-|0|CENPE,CENPE|1;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE chr4:103151377-103153047|147|13.83|0.77|4.17|-|0|CENPE,CENPE|1 chr4:103151377-103153047|147|13.83|0.77|4.17|-|0|CENPE,CENPE|1 MSMS UPN47_class_I_Rep_2 3 488.2354431152344 2 488.235104 974.455655 NaN NaN NaN NaN NaN NaN NaN 77.034 1 80.365 79.865 80.865 3.3315 0 0 0 0.33946 1 19090 19090 24.674 0 1 43817 608 27761 27773 50445 50445 -0.03259423306951703 TIEYCAPEVL 10 Unmodified _TIEYCAPEVL_ 0 0 0 ENST00000475666.1_1_2:242048116-242051833:-|nuORF;ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK ENST00000475666.1_1_2:242048116-242051833:-|nuORF ENST00000475666.1_1_2:242048116-242051833:-|nuORF MSMS UPN47_class_I_Rep_2 3 569.2578735351562 2 569.278457 1136.54236 NaN NaN NaN NaN NaN NaN NaN 73.308 1 76.605 76.105 77.105 3.2971 0 0 0 0.53105 1 18018 18018 9.3831 0.63772 1 43818 2137 27762 27774 50446 50446 -0.020447600767511176 TIFCHSCLSY 10 Unmodified _TIFCHSCLSY_ 0 0 0 L1MC5a_dup2290|chr2:174356854-174357309:-|1.16524871003731|0.1011770065294672|3.53|151.0|20|2|anti-sense L1MC5a_dup2290|chr2:174356854-174357309:-|1.16524871003731|0.1011770065294672|3.53|151.0|20|2|anti-sense L1MC5a_dup2290|chr2:174356854-174357309:-|1.16524871003731|0.1011770065294672|3.53|151.0|20|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 586.735107421875 2 587.257002 1172.49945 0.36958 0.00021704 2.3298 0.0013682 2.6994 0.0015852 587.2581041089585 65.985 0.33036 69.244 69.096 69.427 3.2588 24 20 2 0 0 0 0.84575 1 15846 15846 3.2813 0.28607 1 63754 43819 11732 27763 27775 50447 50447 -0.07989853405797476 TIFDDTCC 8 Unmodified _TIFDDTCC_ 0 0 0 REV__L1PREC2_dup496|chr1:235703772-235704795:-|2.087486477191667|0.0189312931181868|6.78|150.0|42|1|anti-sense REV__L1PREC2_dup496|chr1:235703772-235704795:-|2.087486477191667|0.0189312931181868|6.78|150.0|42|1|anti-sense MSMS UPN47_class_I_Rep_1 2 459.172119140625 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 33.323 1 37.021 36.521 37.521 3.6983 0 0 0 0.40738 1 5853 5853 0.79363 0 1 + 43820 29171 27764 27776 50448 50448 -0.1308575503934435 TIFDDTCC 8 Unmodified _TIFDDTCC_ 0 0 0 REV__L1PREC2_dup496|chr1:235703772-235704795:-|2.087486477191667|0.0189312931181868|6.78|150.0|42|1|anti-sense REV__L1PREC2_dup496|chr1:235703772-235704795:-|2.087486477191667|0.0189312931181868|6.78|150.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 459.171875 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 41.146 1 44.652 44.152 45.152 3.506 0 0 0 0.40746 1 7465 7465 0.69038 0 1 + 43821 29171 27764 27776 50449 50449 -0.1308575503934435 TIFEIWSYI 9 Unmodified _TIFEIWSYI_ 0 0 0 REV__nc|ENSG00000080618|Q96IY4-2|CPB2 REV__nc|ENSG00000080618|Q96IY4-2|CPB2 MSMS UPN48_class_I_Rep_2 6 586.3033447265625 2 586.305332 1170.59611 NaN NaN NaN NaN NaN NaN NaN 70.482 1 74.017 73.517 74.517 3.5359 0 0 0 0.2088 1 16398 16398 15.847 1.9411 1 + 43822 17907 27765 27777 50450 50450 0.01763780417286398 TIFHELVYL 9 Unmodified _TIFHELVYL_ 0 0 0 REV__ENSG00000122863|ENST00000373115|CHST3 REV__ENSG00000122863|ENST00000373115|CHST3 MSMS UPN47_class_I_Rep_2 3 567.8107299804688 2 567.813325 1133.6121 NaN NaN NaN NaN NaN NaN NaN 63.948 1 67.204 66.704 67.704 3.2556 0 0 0 0.36505 1 15201 15201 7.2892 1.0834 1 + 43823 18765 27766 27778 50451 50451 0.050634866541713563 TIFWAVWH 8 Unmodified _TIFWAVWH_ 0 0 0 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 REV__nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS UPN47_class_I_Rep_1 2 529.8085327148438 2 530.27417 1058.53379 NaN NaN NaN NaN NaN NaN NaN 55.822 1 59.301 58.801 59.801 3.4785 0 0 0 0.40364 1 12701 12701 5.7604 1.816 1 + 43824 18351 27767 27779 50452 50452 0.006860988595917661 TIGSGIGIFGV 11 Unmodified _TIGSGIGIFGV_ 0 0 0 ENST00000572418.1_1_17:3801110-3806945:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1 ENST00000572418.1_1_17:3801110-3806945:-|nuORF ENST00000572418.1_1_17:3801110-3806945:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 510.78961181640625 2 510.78985 1019.56515 0.2057 0.00010507 -0.24618 -0.00012575 -0.040486 -2.068E-05 510.78972713400367 56.721 0.73896 60.022 59.6 60.339 3.3009 88 55 2 0 0 0 0.31897 2 12964 12919;12964 13.906 3.0821 1 232510 43825 1864 27768 27780 50453;50454 50454 0.05614627103057046 TIGTVLGHL 9 Unmodified _TIGTVLGHL_ 0 0 0 Tigger1_dup5495|chr7:23613733-23616070:-|1.5475462040104593|0.0870165384245082|4.15|151.0|30|2|sense Tigger1_dup5495|chr7:23613733-23616070:-|1.5475462040104593|0.0870165384245082|4.15|151.0|30|2|sense Tigger1_dup5495|chr7:23613733-23616070:-|1.5475462040104593|0.0870165384245082|4.15|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 455.7711181640625 2 455.77146 909.528367 NaN NaN NaN NaN NaN NaN NaN 30.889 1 34.371 33.871 34.871 3.4821 0 0 0 0.37476 1 5156 5156 6.7232 0 1 43826 33127 27769 27781 50455 50455 0.06998375277123614 TIHAFPHLR 9 Unmodified _TIHAFPHLR_ 0 0 0 L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|57|3|sense L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|57|3|sense L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.3088989257812 2 546.309075 1090.6036 0.42785 0.00023374 -0.27843 -0.00015211 0.14942 8.163E-05 546.3088022938408 75.019 0.47368 78.331 77.998 78.471 3.3127 143 53 4 0 0 0 0.35081 1 18463 18463 10.824 1.4408 1 585510 43827 9216 27770 27782 50456 50456 0.06191977528192183 TIHIEIVS 8 Unmodified _TIHIEIVS_ 0 0 0 L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|82|3|anti-sense L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|82|3|anti-sense L1MC4a_dup4169|chr7:27807239-27808474:-|2.3586933999767035|0.0740308061919162|4.99|151.0|82|3|anti-sense MSMS UPN48_class_I_Rep_1 5 456.264404296875 2 456.263468 910.512382 NaN NaN NaN NaN NaN NaN NaN 26.663 1 30.226 29.726 30.726 3.5629 0 0 0 0.40746 1 3311 3311 0.69038 0 1 43828 11575 27771 27783 50457 50457 0.05354669040241333 TIHKALQRR 9 Unmodified _TIHKALQRR_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MSMS UPN47_class_I_Rep_1 2 561.8462524414062 2 561.846356 1121.67816 NaN NaN NaN NaN NaN NaN NaN 87.852 1 91.508 91.008 92.008 3.6563 0 0 0 0.4007 1 21962 21962 0.52476 0 1 43829 4334 27772 27784 50458 50458 0.12218740339585565 TIHLYSVMEY 10 Unmodified _TIHLYSVMEY_ 0 0 0 REV__MER2_dup761|chr2:17752149-17752449:-|1.0374292401802612|0.0799985673767554|3.7|150.0|20|3|anti-sense REV__MER2_dup761|chr2:17752149-17752449:-|1.0374292401802612|0.0799985673767554|3.7|150.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 628.3033447265625 2 628.305007 1254.59546 0.39 0.00024504 -1.4458 -0.00090839 -1.0558 -0.00066335 628.3032866802105 61.136 0.58799 64.301 64.02 64.608 3.1651 98 50 3 0 0 0 0.56033 1 14461 14461 3.5965 0.31518 1 213300 + 43830 31149 27773 27785 50459 50459 -0.02165382294037954 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS UPN46_class_I_Rep_3 1 479.30865478515625 3 478.974893 1433.90285 0.22507 0.0001078 -0.38222 -0.00018307 -0.15715 -7.5271E-05 479.3090136960875 47.027 0.42025 47.027 46.664 47.084 0 50 38 2 0 0 0 0.56526 1 9685 9685 0.12286 0.12286 1 685850 43831 16628 27774 27786 50460 50460 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 478.974893 1433.90285 -0.21549 -0.00010322 -0.47581 -0.0002279 -0.6913 -0.00033112 478.9744732207412 43.173 0.63261 46.86 46.514 47.147 3.6875 -0.011181 3.7977E-06 NaN 0.12286 60 41 2 NaN NaN NaN NaN 0 NaN NaN 0 48850 43832 16628 27774 27786 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH UPN47_class_I_Rep_2 3 3 478.974893 1433.90285 -0.14342 -6.8695E-05 -0.3947 -0.00018905 -0.53812 -0.00025775 478.9745674810802 43.585 0.082348 46.943 46.87 46.953 3.358 0.071323 0.00012034 NaN 0.12286 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 44748 43833 16628 27774 27786 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH UPN48_class_I_Rep_1 5 3 478.974893 1433.90285 0.12416 5.9471E-05 -0.68846 -0.00032976 -0.5643 -0.00027029 479.30885771846073 43.145 0.19088 46.656 46.609 46.8 3.5103 -0.21568 -0.00030177 NaN 0.12286 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 265560 43834 16628 27774 27786 0.20325287933292202 TIHVKERVRK 10 Unmodified _TIHVKERVRK_ 0 0 0 REV__L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|5|1|sense REV__L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 633.40673828125 2 633.39367 1264.77279 NaN NaN NaN NaN NaN NaN NaN 94.043 1 97.935 97.435 98.435 3.8914 0 0 0 0.53105 1 22293 22293 1.4819 0 1 + 43835 27653 27775 27787 50461 50461 0.15099254090910108 TIHVKVQRNL 10 Unmodified _TIHVKVQRNL_ 0 0 0 ENST00000564702.1_1_15:30771228-30776788:+|nuORF ENST00000564702.1_1_15:30771228-30776788:+|nuORF ENST00000564702.1_1_15:30771228-30776788:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 604.3677368164062 2 604.367121 1206.71969 0.63465 0.00038356 -0.56613 -0.00034215 0.068519 4.1411E-05 604.3666818176664 97.898 0.056572 101.38 101.37 101.42 3.4836 10 7 2 0 0 0 0.56486 1 24015 24015 0.40072 0 1 49352 43836 7478 27776 27788 50462 50462 0.12459876308275852 TIIDIITHR 9 Unmodified _TIIDIITHR_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS UPN48_class_I_Rep_1 5 541.32177734375 2 541.321848 1080.62914 0.44639 0.00024164 -0.08391 -4.5423E-05 0.36248 0.00019622 541.3216189584464 55.319 0.58469 58.828 58.576 59.161 3.5082 51 37 2 0 0 0 0.16799 1 11800 11800 23.79 0 1 139630 43837 5343 27777 27789 50463 50463 0.09205407259969434 TIIDIITHR 9 Unmodified _TIIDIITHR_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS UPN48_class_I_Rep_2 6 541.321533203125 2 541.321848 1080.62914 0.60371 0.0003268 -0.23389 -0.00012661 0.36982 0.00020019 541.3217075511219 55.253 0.60232 58.809 58.508 59.11 3.5559 58 34 2 0 0 0 0.2924 1 11744 11744 14.405 0 1 110750 43838 5343 27777 27789 50464 50464 0.09205407259969434 TIIDIITHR 9 Unmodified _TIIDIITHR_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS UPN48_class_I_Rep_3 7 541.3214111328125 2 541.321848 1080.62914 0.40823 0.00022099 -0.10561 -5.7169E-05 0.30262 0.00016382 541.3217680994188 55.151 0.67904 58.706 58.446 59.125 3.5554 63 38 2 0 0 0 0.16799 2 11704 11659;11704 23.79 0 1 105630 43839 5343 27777 27789 50465;50466 50466 0.09205407259969434 TIIDILTKR 9 Unmodified _TIIDILTKR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MULTI-SECPEP UPN48_class_I_Rep_1 5 536.8400268554688 2 536.839874 1071.66519 0.41587 0.00022326 0.0050062 2.6875E-06 0.42088 0.00022595 536.8398129259145 55.629 1.1915 59.137 58.636 59.828 3.5082 208 83 3 0 0 0 4.7138E-54 1 11944 11944 136.39 40.026 1 2602700 43840 2883 27778 27790 50467 50467 0.13222864436852433 TIIDILTKR 9 Unmodified _TIIDILTKR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MULTI-SECPEP UPN48_class_I_Rep_2 6 536.840087890625 2 536.839874 1071.66519 0.57895 0.0003108 -0.13971 -7.5004E-05 0.43923 0.0002358 536.839721208859 55.538 1.2559 59.094 58.582 59.838 3.5559 217 82 4 0 0 0 2.1377999999999998E-32 1 11838 11838 136.39 40.026 1 1882200 43841 2883 27778 27790 50468 50468 0.13222864436852433 TIIDILTKR 9 Unmodified _TIIDILTKR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MULTI-MSMS UPN48_class_I_Rep_3 7 536.8401489257812 2 536.839874 1071.66519 0.4469 0.00023991 -0.0163 -8.7505E-06 0.4306 0.00023116 536.839811799704 55.52 1.0539 59.075 58.575 59.629 3.5554 204 68 4 0 0 0 0.0039863 1 11783 11783 148.27 51.902 1 2617100 43842 2883 27778 27790 50469 50469 0.13222864436852433 TIIEAAHQCR 10 Unmodified _TIIEAAHQCR_ 0 0 0 REV__ENSG00000162613|ENST00000370768|FUBP1 REV__ENSG00000162613|ENST00000370768|FUBP1 MSMS UPN47_class_I_Rep_2 3 571.2938232421875 2 571.292765 1140.57098 NaN NaN NaN NaN NaN NaN NaN 73.08 1 76.377 75.877 76.877 3.2971 0 0 0 0.53105 1 17948 17948 1.4819 0 1 + 43843 19932 27779 27791 50470 50470 0.0063140234306047205 TIIHLLQWLK 10 Unmodified _TIIHLLQWLK_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 632.36181640625 2 632.892441 1263.77033 0.71836 0.00045464 -0.40542 -0.00025659 0.31293 0.00019805 632.8924161973117 95.598 0.17742 95.598 95.548 95.725 0 18 16 2 0 0 0 0.84575 1 23219 23219 1.6526 0 1 590850 43844 11279 27780 27792 50471 50471 0.14899405633263996 TIIHLLQWLK 10 Unmodified _TIIHLLQWLK_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense MSMS UPN48_class_I_Rep_2 6 632.8928833007812 2 632.892441 1263.77033 NaN NaN NaN NaN NaN NaN NaN 77.126 1 80.737 80.237 81.237 3.6116 0 0 0 0.53105 1 18239 18239 1.6526 0.32309 1 43845 11279 27780 27792 50472 50472 0.14899405633263996 TIIHLLQWLK 10 Unmodified _TIIHLLQWLK_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 632.36181640625 2 632.892441 1263.77033 0.49692 0.0003145 -0.24902 -0.0001576 0.2479 0.00015689 632.89249290331 98.425 0.60704 102.2 101.92 102.53 3.7707 185 86 3 0 0 0 0.84575 1 23402 23402 3.2813 1.6287 1 1909300 43846 11279 27780 27792 50473 50473 0.14899405633263996 TIIHLLQWLK 10 Unmodified _TIIHLLQWLK_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 632.36181640625 2 632.892441 1263.77033 0.61558 0.0003896 -0.28012 -0.00017729 0.33546 0.00021231 632.892435543623 98.468 0.48427 102.37 102.21 102.7 3.9022 95 69 2 0 0 0 0.84575 1 23369 23369 5.7319 4.0792 1 1498900 43847 11279 27780 27792 50474 50474 0.14899405633263996 TIIHLLQWLK 10 Unmodified _TIIHLLQWLK_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 632.3619995117188 2 632.892441 1263.77033 0.62602 0.0003962 -0.034676 -2.1946E-05 0.59134 0.00037426 632.8924520225975 91.262 0.44931 95.125 94.902 95.351 3.8634 87 66 2 0 0 0 0.84575 1 21630 21630 1.6526 0 1 2900400 43848 11279 27780 27792 50475 50475 0.14899405633263996 TIIHLLQWLK 10 Unmodified _TIIHLLQWLK_ 0 0 0 L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense L1MC2_dup6229|chr22:42050661-42051669:+|1.2904233283224251|0.3950367217547414|1.71|151.0|26|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 632.892441 1263.77033 0.62538 0.0003958 -0.35229 -0.00022296 0.27309 0.00017284 633.3930904720494 91.592 0.037086 95.456 95.432 95.469 3.8634 -0.071452 5.0072E-05 NaN 1.6526 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 211140 43849 11279 27780 27792 0.14899405633263996 TIIHPVPPIH 10 Unmodified _TIIHPVPPIH_ 0 0 0 REV__L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense REV__L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.19617 0.00011032 0.40109 0.00022555 0.59727 0.00033586 562.3347252050776 30.552 0.1364 30.552 30.44 30.576 0 18 9 3 0 0 0 0.56033 1 4968 4968 3.5965 0 1 368970 + 43850 26569 27781 27793 50476 50476 0.09854301502286944 TIIHPVPPIH 10 Unmodified _TIIHPVPPIH_ 0 0 0 REV__L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense REV__L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|32|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.8366088867188 2 562.334759 1122.65496 0.49269 0.00027706 -0.45019 -0.00025316 0.042498 2.3898E-05 562.3343212586504 109.22 0.75874 112.89 112.81 113.57 3.6715 192 102 2 0 0 0 0.56033 1 26094 26094 3.5965 0 1 3580200 + 43851 26569 27781 27793 50477 50477 0.09854301502286944 TIIKKLKLIK 10 Unmodified _TIIKKLKLIK_ 0 0 0 REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|15|2|sense REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 599.7221069335938 2 599.436484 1196.85842 NaN NaN NaN NaN NaN NaN NaN 117.55 1 117.55 117.05 118.05 0 0 0 0 0.53105 1 29142 29142 0 0 1 + 43852 28675 27782 27794 50478 50478 0.2678602622386279 TIIKKLKLIK 10 Unmodified _TIIKKLKLIK_ 0 0 0 REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|15|2|sense REV__L1MEf_dup6792|chrX:47995349-47996616:+|1.019908075277212|0.0667688689600431|3.93|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 599.4368286132812 2 599.436484 1196.85842 NaN NaN NaN NaN NaN NaN NaN 110.41 1 113.94 113.44 114.44 3.5271 0 0 0 0.53105 1 26879 26879 0 0 1 + 43853 28675 27782 27794 50479 50479 0.2678602622386279 TIILHRIRKN 10 Unmodified _TIILHRIRKN_ 0 0 0 L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|82|3|sense;L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|38|2|sense;L1PB1_dup3358|chr4:105168590-105170143:-|1.6594071184348536|0.0633415582084924|4.71|151.0|26|2|sense;L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|3|1|sense;L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|33|1|sense;L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|185|3|sense;L1PBa_dup755|chr5:37094269-37097001:+|1.3761816451370812|0.0520390181773451|4.72|149.0|22|1|sense;L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|80|2|sense;L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|59|1|sense;L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|15|1|sense;L1PB1_dup4230|chr5:93755382-93761065:+|1.6634001843570188|0.0591620307191421|4.81|151.0|106|2|sense;L1PB1_dup4935|chr6:47546554-47551192:+|6.412205038568226|0.1108267667084446|5.85|151.0|81|2|sense L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|82|3|sense L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|82|3|sense MSMS UPN46_class_I_Rep_3 1 632.4024658203125 2 632.404038 1262.79352 NaN NaN NaN NaN NaN NaN NaN 83.091 1 83.091 82.591 83.591 0 0 0 0 0.53105 1 19715 19715 1.6526 0 1 43854 15013 27783 27795 50480 50480 0.17263844470608092 TIINQALYL 9 Unmodified _TIINQALYL_ 0 0 0 ENST00000482857.5_1_2:33740203-33741790:+|nuORF ENST00000482857.5_1_2:33740203-33741790:+|nuORF ENST00000482857.5_1_2:33740203-33741790:+|nuORF MSMS UPN48_class_I_Rep_1 5 524.805908203125 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 65.369 1 68.823 68.323 69.323 3.4541 0 0 0 0.2408 1 14868 14868 13.906 0 1 43855 7006 27784 27796 50481 50481 0.07455200137110296 TIINQALYL 9 Unmodified _TIINQALYL_ 0 0 0 ENST00000482857.5_1_2:33740203-33741790:+|nuORF ENST00000482857.5_1_2:33740203-33741790:+|nuORF ENST00000482857.5_1_2:33740203-33741790:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 524.8040161132812 2 524.8055 1047.59645 0.46324 0.00024311 -0.5432 -0.00028507 -0.079959 -4.1963E-05 524.8050931221437 64.434 0.79734 67.943 67.605 68.402 3.5083 131 69 2 0 0 0 0.46869 1 14622 14622 3.9444 0 1 300760 43856 7006 27784 27796 50482 50482 0.07455200137110296 TIIPFRKH 8 Unmodified _TIIPFRKH_ 0 0 0 ENST00000538170.6_1_18:32621413-32677455:+|nuORF;ENST00000585592.1_1_18:32621503-32650351:+|nuORF;nc|ENSG00000166974|Q15555-2|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2 ENST00000538170.6_1_18:32621413-32677455:+|nuORF ENST00000538170.6_1_18:32621413-32677455:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 505.7669982910156 2 506.308544 1010.60253 0.21931 0.00011104 1.0569 0.00053513 1.2762 0.00064617 506.30885099846586 45.813 0.058258 49.571 49.519 49.577 3.7579 5 3 2 0 0 0 0.72333 1 8875 8875 2.0598 0 1 49190 43857 4282 27785 27797 50483 50483 0.09765763159327889 TIISSGVAKW 10 Unmodified _TIISSGVAKW_ 0 0 0 L1MC5_dup1837|chr2:171765986-171766316:+|1.206755588147947|0.0292783218366959|5.37|151.0|23|3|anti-sense L1MC5_dup1837|chr2:171765986-171766316:+|1.206755588147947|0.0292783218366959|5.37|151.0|23|3|anti-sense L1MC5_dup1837|chr2:171765986-171766316:+|1.206755588147947|0.0292783218366959|5.37|151.0|23|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.30078125 2 531.303124 1060.5917 0.089259 4.7424E-05 -4.3315 -0.0023014 -4.2423 -0.0022539 531.3009326823939 30.614 0.061895 30.614 30.591 30.653 0 6 4 2 0 0 0 0.56033 1 5014 5014 3.5965 0 1 114510 43858 11676 27786 27798 50484 50484 0.06382315994369492 TIISTDRKSI 10 Unmodified _TIISTDRKSI_ 0 0 0 L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|24|2|sense L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|24|2|sense L1MA9_dup2898|chr3:120074615-120076533:+|1.2702284858485011|0.0184994324906111|6.1|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.3299560546875 2 567.32987 1132.64519 0.43159 0.00024486 -0.041458 -2.352E-05 0.39014 0.00022134 567.3297141449531 83.599 1.9226 87.137 86.276 88.199 3.5386 385 228 3 0 0 0 0.55448 1 21080 21080 4.897 0 1 511650 43859 10132 27787 27799 50485 50485 0.08417068706262398 TIIVLLPLG 9 Unmodified _TIIVLLPLG_ 0 0 0 REV__ENSG00000235750|ENST00000423313|KIAA0040 REV__ENSG00000235750|ENST00000423313|KIAA0040 MSMS UPN47_class_I_Rep_1 2 469.8331604003906 2 469.817879 937.621205 NaN NaN NaN NaN NaN NaN NaN 15.172 1 18.669 18.169 19.169 3.4968 0 0 0 0.4029 1 751 751 0 0 1 + 43860 21309 27788 27800 50486 50486 0.14989880010534762 TIIWKHKG 8 Unmodified _TIIWKHKG_ 0 0 0 nc|ENSG00000149294|P13591-6|NCAM1;nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1 nc|ENSG00000149294|P13591-6|NCAM1 nc|ENSG00000149294|P13591-6|NCAM1 MSMS UPN48_class_I_Rep_1 5 491.7955017089844 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.786 1 70.237 69.737 70.737 3.4516 0 0 0 0.40625 1 15298 15298 2.3027 0 1 43861 3536 27789 27801 50487 50487 0.08446074267999393 TIIWYWFL 8 Unmodified _TIIWYWFL_ 0 0 0 REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|50|3|anti-sense REV__L1MEf_dup1444|chr2:148195143-148195916:+|1.0085522461902137|0.010375978409696|6.6|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_3 4 571.309814453125 2 571.307678 1140.6008 NaN NaN NaN NaN NaN NaN NaN 65.336 1 68.515 68.015 69.015 3.1795 0 0 0 0.30027 1 15685 15685 32.117 9.3807 1 + 43862 28613 27790 27802 50488 50488 0.0361270935070479 TIKESPNDILF 11 Unmodified _TIKESPNDILF_ 0 0 0 REV__ENSG00000165934|ENST00000298875|CPSF2 REV__ENSG00000165934|ENST00000298875|CPSF2 MSMS UPN48_class_I_Rep_1 5 638.8419189453125 2 638.84281 1275.67107 NaN NaN NaN NaN NaN NaN NaN 72.693 1 76.167 75.667 76.667 3.4732 0 0 0 0.38417 1 17078 17078 0.96228 0.36078 1 + 43863 20145 27791 27803 50489 50489 0.044259181578581774 TIKIMNIF 8 Unmodified _TIKIMNIF_ 0 0 0 L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|67|3|anti-sense L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|67|3|anti-sense L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|67|3|anti-sense MSMS UPN47_class_I_Rep_1 2 490.28399658203125 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 52.581 1 56.139 55.639 56.639 3.5585 0 0 0 0.40604 1 11711 11711 2.5775 0 1 43864 12392 27792 27804 50490 50490 0.06708776581911025 TIKIMNIF 8 Unmodified _TIKIMNIF_ 0 0 0 L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|67|3|anti-sense L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|67|3|anti-sense L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|67|3|anti-sense MSMS UPN47_class_I_Rep_2 3 490.2855224609375 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 52.855 1 56.181 55.681 56.681 3.3266 0 0 0 0.40404 1 11820 11820 5.2307 0 1 43865 12392 27792 27804 50491 50491 0.06708776581911025 TIKKSTIKKA 10 Unmodified _TIKKSTIKKA_ 0 0 0 REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|57|2|sense REV__Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|57|2|sense MSMS UPN46_class_I_Rep_3 1 559.3690795898438 2 559.368798 1116.72304 NaN NaN NaN NaN NaN NaN NaN 89.118 1 89.118 88.618 89.618 0 0 0 0 0.53105 1 21430 21430 0 0 1 + 43866 32547 27793 27805 50492 50492 0.16935126362295705 TIKLTVIAI 9 Unmodified _TIKLTVIAI_ 0 0 0 REV__Tigger1_dup4216|chr5:87354220-87356383:+|3.5815134554902297|0.4763148507718404|2.91|151.0|123|2|anti-sense REV__Tigger1_dup4216|chr5:87354220-87356383:+|3.5815134554902297|0.4763148507718404|2.91|151.0|123|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.32861328125 2 486.328611 970.642668 0.23608 0.00011481 -0.35015 -0.00017029 -0.11408 -5.5479E-05 486.32833409613244 73.207 0.58378 76.504 76.133 76.717 3.2971 63 46 2 0 0 0 0.47197 1 17889 17889 3.5965 0 1 222400 + 43867 32441 27794 27806 50493 50493 0.15617265039213635 TIKRKHWG 8 Unmodified _TIKRKHWG_ 0 0 0 L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|133|3|sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|133|3|sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|133|3|sense MSMS UPN48_class_I_Rep_3 7 513.3037719726562 2 513.303793 1024.59303 NaN NaN NaN NaN NaN NaN NaN 117.87 1 121.48 120.98 121.98 3.6124 0 0 0 0.40738 1 28034 28034 0.79363 0 1 43868 9480 27795 27807 50494 50494 0.08171994873782751 TIKRLPLMG 9 Unmodified _TIKRLPLMG_ 0 0 0 HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|94|2|sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|94|2|sense HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|94|2|sense MSMS UPN48_class_I_Rep_3 7 514.818359375 2 514.817887 1027.62122 NaN NaN NaN NaN NaN NaN NaN 61.276 1 64.789 64.289 65.289 3.5129 0 0 0 0.39326 1 13528 13528 2.3027 0 1 43869 8209 27796 27808 50495 50495 0.108515567388622 TIKSATISY 9 Unmodified _TIKSATISY_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45 ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 492.2744140625 2 492.274032 982.533512 0.25421 0.00012514 0.074856 3.685E-05 0.32907 0.00016199 492.27394843292274 39.691 0.6847 39.691 39.429 40.114 0 105 67 3 0 0 0 0.013215 4 7645 7612;7645;7681;7718 67.838 32.786 1 275380 43870 4890 27797 27809 50496;50497;50498;50499 50497 0.04154634349106345 TIKSGDLEY 9 Unmodified _TIKSGDLEY_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MSMS UPN46_class_I_Rep_3 1 513.2608032226562 2 513.261122 1024.50769 NaN NaN NaN NaN NaN NaN NaN 39.308 1 39.308 38.808 39.808 0 0 0 0 0.3377 1 7545 7545 8.7454 1.4562 1 43871 4510 27798 27810 50500 50500 -0.0035825989318709617 TIKTKRSI 8 Unmodified _TIKTKRSI_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_1 2 473.8057861328125 2 473.805834 945.597115 -0.39345 -0.00018642 0.1062 5.0317E-05 -0.28725 -0.0001361 473.80589575219227 13.982 0.76407 17.439 17.271 18.035 3.457 185 94 3 0 0 0 0.82752 1 471 471 45.74 0.040262 1 340810 43872 2425;7292 27799 27811 50501 50501 0.122140395768497 TIKTKRSI 8 Unmodified _TIKTKRSI_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 473.8057861328125 2 473.805834 945.597115 -0.29134 -0.00013804 0.22212 0.00010524 -0.069219 -3.2796E-05 473.8059569807685 14.06 0.79417 17.447 17.283 18.077 3.3871 162 95 3 0 0 0 0.82752 2 465 465;499 19.257 0 1 312350 43873 2425;7292 27799 27811 50502;50503 50502 0.122140395768497 TIKTKRSI 8 Unmodified _TIKTKRSI_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_3 4 473.8056335449219 2 473.805834 945.597115 -0.8527 -0.00040402 0.27402 0.00012983 -0.57868 -0.00027418 473.80596767099564 14.106 0.58011 17.475 17.349 17.929 3.3697 141 70 3 0 0 0 0.82752 2 459 459;489 24.021 0 1 311890 43874 2425;7292 27799 27811 50504;50505 50504 0.122140395768497 TIKTKRTI 8 Unmodified _TIKTKRTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D nc|ENSG00000167552|Q71U36-2|TUBA1A nc|ENSG00000167552|Q71U36-2|TUBA1A MULTI-MSMS UPN47_class_I_Rep_1 2 480.81298828125 2 480.813659 959.612765 -0.37751 -0.00018151 -0.048528 -2.3333E-05 -0.42604 -0.00020484 480.81350704758273 14.201 0.59093 17.676 17.553 18.144 3.475 169 72 4 0 0 0 0.82752 2 555 524;555 29.841 2.2118 1 296790 43875 4314 27800 27812 50506;50507 50507 0.13134326093893378 TIKTKRTI 8 Unmodified _TIKTKRTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D nc|ENSG00000167552|Q71U36-2|TUBA1A nc|ENSG00000167552|Q71U36-2|TUBA1A MULTI-MSMS UPN47_class_I_Rep_3 4 480.8133544921875 2 480.813659 959.612765 -0.77298 -0.00037166 0.15515 7.4596E-05 -0.61784 -0.00029707 480.8135866247236 14.321 0.60586 17.691 17.574 18.179 3.3697 150 72 3 0 0 0 0.82752 1 535 535 43.772 1.9328 1 201290 43876 4314 27800 27812 50508 50508 0.13134326093893378 TIKTQRYSN 9 Unmodified _TIKTQRYSN_ 0 0 0 REV__L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|1|1|sense REV__L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 555.7994995117188 2 555.798737 1109.58292 NaN NaN NaN NaN NaN NaN NaN 82.787 1 86.124 85.624 86.624 3.337 0 0 0 0.3967 1 20751 20751 1.4819 0.15237 1 + 43877 24598 27801 27813 50509 50509 0.03251342357907561 TIKYQLFRV 9 Unmodified _TIKYQLFRV_ 0 0 0 REV__L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|50|2|anti-sense REV__L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|50|2|anti-sense MSMS UPN46_class_I_Rep_3 1 584.34814453125 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 41.167 1 41.167 40.667 41.667 0 0 0 0 0.39598 1 8045 8045 1.6526 0 1 + 43878 26943 27802 27814 50510 50510 0.10450570673742732 TILCHKYEI 9 Unmodified _TILCHKYEI_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN47_class_I_Rep_1 2 560.798095703125 2 560.296985 1118.57942 0.39955 0.00022387 -0.62039 -0.0003476 -0.22083 -0.00012373 560.29677060387 58.324 0.44411 61.751 61.412 61.856 3.4272 61 28 3 0 0 0 0.47763 1 13379 13379 2.9952 0.41776 1 163530 + 43879 18060 27803 27815 50511 50511 0.024869562596677497 TILDLLRSAP 10 Unmodified _TILDLLRSAP_ 0 0 0 REV__ENSG00000050165|ENST00000683431|DKK3 REV__ENSG00000050165|ENST00000683431|DKK3 MULTI-MSMS UPN48_class_I_Rep_1 5 549.8296508789062 2 549.829506 1097.64446 0.5901 0.00032446 0.029045 1.597E-05 0.61915 0.00034043 549.8294571378195 64.243 0.61784 67.701 67.338 67.956 3.4578 67 44 2 0 0 0 0.4561 1 14449 14449 15.248 0 1 223330 + 43880 17676 27804 27816 50512 50512 0.0995427405719056 TILDLLRSAP 10 Unmodified _TILDLLRSAP_ 0 0 0 REV__ENSG00000050165|ENST00000683431|DKK3 REV__ENSG00000050165|ENST00000683431|DKK3 MULTI-MSMS UPN48_class_I_Rep_2 6 549.828857421875 2 549.829506 1097.64446 0.52813 0.00029038 0.059632 3.2787E-05 0.58776 0.00032317 549.8294754864544 64.123 0.51259 67.598 67.253 67.766 3.4743 68 37 2 0 0 0 0.35325 1 14396 14396 23.79 0 1 280590 + 43881 17676 27804 27816 50513 50513 0.0995427405719056 TILDLLRSAP 10 Unmodified _TILDLLRSAP_ 0 0 0 REV__ENSG00000050165|ENST00000683431|DKK3 REV__ENSG00000050165|ENST00000683431|DKK3 MULTI-MSMS UPN48_class_I_Rep_3 7 549.8300170898438 2 549.829506 1097.64446 0.44419 0.00024423 0.24083 0.00013241 0.68501 0.00037664 549.829484215775 63.867 0.67064 67.375 67.127 67.798 3.5083 105 53 3 0 0 0 0.40112 2 14277 14277;14397 19.362 0 1 271130 + 43882 17676 27804 27816 50514;50515 50514 0.0995427405719056 TILDLSYNQ 9 Unmodified _TILDLSYNQ_ 0 0 0 ENSG00000184434|ENST00000380055|LRRC19 ENSG00000184434|ENST00000380055|LRRC19 ENSG00000184434|ENST00000380055|LRRC19 MULTI-MSMS UPN47_class_I_Rep_3 4 533.7742309570312 2 533.774396 1065.53424 0.42636 0.00022758 -0.71121 -0.00037963 -0.28485 -0.00015204 533.7739631211564 77.295 0.70451 80.564 80.2 80.904 3.269 133 76 2 0 0 0 0.11683 1 19248 19248 30.637 0 1 171350 43883 5052 27805 27817 50516 50516 0.004094289981367183 TILDTTERSFA 11 Unmodified _TILDTTERSFA_ 0 0 0 REV__ENST00000259486.10_1_8:120596034-120598489:-|nuORF REV__ENST00000259486.10_1_8:120596034-120598489:-|nuORF MSMS UPN47_class_I_Rep_3 4 627.3214111328125 2 627.322242 1252.62993 NaN NaN NaN NaN NaN NaN NaN 29.266 1 32.59 32.09 33.09 3.3235 0 0 0 0.38417 1 4707 4707 2.086 0.43339 1 + 43884 21548 27806 27818 50517 50517 0.013721571183850756 TILDVVRV 8 Unmodified _TILDVVRV_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP UPN47_class_I_Rep_2 3 457.2347106933594 2 457.78711 913.559667 -0.4731 -0.00021658 -0.62573 -0.00028645 -1.0988 -0.00050303 457.78672400409016 35.764 0.83612 39.175 38.984 39.82 3.4114 99 59 2 0 0 0 0.72333 1 6813 6813 5.2307 2.9279 1 83183 + 43885 17971 27807 27819 50518 50518 0.09942948311243072 TILENWMSE 9 Unmodified _TILENWMSE_ 0 0 0 HAL1_dup14880|chr10:87278685-87279340:+|2.0667348248823623|0.0308190818275393|6.07|149.0|19|3|sense;HAL1_dup14811|chr10:79756477-79757119:+|1.160180604486|0.0879102188344025|3.72|151.0|18|3|sense HAL1_dup14880|chr10:87278685-87279340:+|2.0667348248823623|0.0308190818275393|6.07|149.0|19|3|sense HAL1_dup14880|chr10:87278685-87279340:+|2.0667348248823623|0.0308190818275393|6.07|149.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 561.7608642578125 2 561.760432 1121.50631 NaN NaN NaN NaN NaN NaN NaN 72.898 1 76.195 75.695 76.695 3.2971 0 0 0 0.39598 1 17893 17893 1.6526 0 1 43886 7804 27808 27820 50519 50519 -0.04958217253602015 TILFYMFVI 9 Unmodified _TILFYMFVI_ 0 0 0 REV__Tigger9b_dup402|chr9:14641404-14641979:+|1.069132502466275|0.3475164872194938|1.62|151.0|17|3|sense REV__Tigger9b_dup402|chr9:14641404-14641979:+|1.069132502466275|0.3475164872194938|1.62|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.8172607421875 2 573.817021 1145.61949 -0.152 -8.7217E-05 0.13656 7.8362E-05 -0.015433 -8.8558E-06 573.8170500633877 32.215 0.75365 35.502 35.146 35.9 3.2867 108 55 3 0 0 0 0.46434 1 5701 5701 4.3292 0 1 112710 + 43887 32816 27809 27821 50520 50520 0.05250502930266521 TILFYMFVI 9 Unmodified _TILFYMFVI_ 0 0 0 REV__Tigger9b_dup402|chr9:14641404-14641979:+|1.069132502466275|0.3475164872194938|1.62|151.0|17|3|sense REV__Tigger9b_dup402|chr9:14641404-14641979:+|1.069132502466275|0.3475164872194938|1.62|151.0|17|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 573.817021 1145.61949 -0.152 -8.7217E-05 0.13656 7.8362E-05 -0.015433 -8.8558E-06 573.8170500633877 32.215 0.75365 35.502 35.146 35.9 3.2867 0.10056 4.1587E-05 NaN 4.3292 108 55 3 NaN NaN NaN NaN 0 NaN NaN 0 112710 + 43888 32816 27809 27821 0.05250502930266521 TILIKARH 8 Unmodified _TILIKARH_ 0 0 0 REV__ENSG00000164125|ENST00000585682|GASK1B REV__ENSG00000164125|ENST00000585682|GASK1B MSMS UPN46_class_I_Rep_3 1 476.3063049316406 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 87.336 1 87.336 86.836 87.836 0 0 0 0 0.40746 1 20921 20921 0.69038 0 1 + 43889 20037 27810 27822 50521 50521 0.12525763159317194 TILKEYVRAL 10 Unmodified _TILKEYVRAL_ 0 0 0 REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MSMS UPN48_class_I_Rep_2 6 603.3668212890625 2 603.366256 1204.71796 NaN NaN NaN NaN NaN NaN NaN 88.753 1 92.491 91.991 92.991 3.7379 0 0 0 0.53105 1 21128 21128 1.4819 0 1 + 43890 18875 27811 27823 50522 50522 0.12378822499681519 TILKEYVRAL 10 Unmodified _TILKEYVRAL_ 0 0 0 REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant REV__UBR4|p.R5060Afs*23|1|0.06|ENSG00000127481|chr1:19081408-19081409|-/A|frameshift_variant MSMS UPN48_class_I_Rep_3 7 603.367431640625 2 603.366256 1204.71796 NaN NaN NaN NaN NaN NaN NaN 73.107 1 76.644 76.144 77.144 3.5373 0 0 0 0.53105 1 17088 17088 1.4819 0 1 + 43891 18875 27811 27823 50523 50523 0.12378822499681519 TILKLDDG 8 Unmodified _TILKLDDG_ 0 0 0 L1MC5a_dup9694|chrX:48943301-48943621:+|1.1185108817227272|0.1129553306323062|3.31|151.0|7|2|sense L1MC5a_dup9694|chrX:48943301-48943621:+|1.1185108817227272|0.1129553306323062|3.31|151.0|7|2|sense L1MC5a_dup9694|chrX:48943301-48943621:+|1.1185108817227272|0.1129553306323062|3.31|151.0|7|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 438.1332702636719 2 437.74765 873.480748 0.044729 1.958E-05 -0.7291 -0.00031916 -0.68437 -0.00029958 437.7473187571266 33.58 0.31636 37.26 37.073 37.389 3.6797 43 32 2 0 0 0 0.72333 1 5190 5190 2.5775 0 1 64017 43892 11776 27812 27824 50524 50524 0.038946762862906326 TILLARPKLL 10 Unmodified _TILLARPKLL_ 0 0 0 REV__ENST00000448973.6_1_16:685217-685415:-|nuORF REV__ENST00000448973.6_1_16:685217-685415:-|nuORF MSMS UPN47_class_I_Rep_3 4 569.390625 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 75.381 1 78.627 78.127 79.127 3.2464 0 0 0 0.53105 1 18698 18698 1.6526 0 1 + 43893 18949 27813 27825 50525 50525 0.20160307121614096 TILLARPKLL 10 Unmodified _TILLARPKLL_ 0 0 0 REV__ENST00000448973.6_1_16:685217-685415:-|nuORF REV__ENST00000448973.6_1_16:685217-685415:-|nuORF MSMS UPN47_class_I_Rep_3 4 569.389404296875 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 75.573 1 78.83 78.33 79.33 3.2573 0 0 0 0.53105 1 18755 18755 0.45834 0 1 + 43894 18949 27813 27825 50526 50526 0.20160307121614096 TILSKKVVSLK 11 Unmodified _TILSKKVVSLK_ 0 0 0 REV__nc|ENSG00000188677|Q9HBI1-3|PARVB REV__nc|ENSG00000188677|Q9HBI1-3|PARVB MULTI-MSMS UPN47_class_I_Rep_2 3 608.4056396484375 2 608.405381 1214.79621 0.63474 0.00038618 0.29452 0.00017919 0.92926 0.00056537 608.405355273088 108.07 0.73233 111.6 111.31 112.05 3.5333 153 77 3 0 0 0 0.67113 2 26226 26226;26282 1.3295 0 1 5656600 + 43895 20980 27814 27826 50527;50528 50527 0.19740255084889213 TILSKKVVSLK 11 Unmodified _TILSKKVVSLK_ 0 0 0 REV__nc|ENSG00000188677|Q9HBI1-3|PARVB REV__nc|ENSG00000188677|Q9HBI1-3|PARVB MULTI-MSMS UPN47_class_I_Rep_3 4 608.406005859375 2 608.405381 1214.79621 0.50998 0.00031028 0.37841 0.00023023 0.88839 0.0005405 608.4054960211039 108.03 0.69513 111.57 111.36 112.05 3.5382 113 74 2 0 0 0 0.67113 3 26380 26380;26421;26484 1.3295 0 1 4351700 + 43896 20980 27814 27826 50529;50530;50531 50529 0.19740255084889213 TILSKKVVSLK 11 Unmodified _TILSKKVVSLK_ 0 0 0 REV__nc|ENSG00000188677|Q9HBI1-3|PARVB REV__nc|ENSG00000188677|Q9HBI1-3|PARVB MULTI-MSMS UPN48_class_I_Rep_3 7 608.4057006835938 2 608.405381 1214.79621 0.55629 0.00033845 0.44571 0.00027117 1.002 0.00060962 608.4054952196462 108.18 0.38388 111.86 111.76 112.15 3.6813 90 37 3 0 0 0 0.67113 2 25572 25572;25621 1.3295 0 1 7528600 + 43897 20980 27814 27826 50532;50533 50532 0.19740255084889213 TILSQKNKTG 10 Unmodified _TILSQKNKTG_ 0 0 0 L1PA5_dup1227|chr2:135938596-135942665:+|1.6559737013473808|0.2369964951371995|2.8|151.0|64|2|sense L1PA5_dup1227|chr2:135938596-135942665:+|1.6559737013473808|0.2369964951371995|2.8|151.0|64|2|sense L1PA5_dup1227|chr2:135938596-135942665:+|1.6559737013473808|0.2369964951371995|2.8|151.0|64|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.316650390625 2 545.316763 1088.61897 0.38154 0.00020806 0.029638 1.6162E-05 0.41117 0.00022422 545.3165772260052 86.713 0.4331 86.713 86.609 87.042 0 55 41 2 0 0 0 0.56155 1 20761 20761 2.7352 0.43246 1 469770 43898 14425 27815 27827 50534 50534 0.07820799534761136 TILVGWAIL 9 Unmodified _TILVGWAIL_ 0 0 0 REV__ENST00000542902.5_2_12:118796881-118796944:-|nuORF REV__ENST00000542902.5_2_12:118796881-118796944:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.3057861328125 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 68.902 1 72.172 71.672 72.672 3.2696 0 0 0 0.34056 1 16702 16702 8.5933 0 1 + 43899 22922 27816 27828 50535 50535 0.10788709350697445 TILVPKLSL 9 Unmodified _TILVPKLSL_ 0 0 0 REV__Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|66|3|sense REV__Tigger1_dup9229|chr12:79880743-79882856:+|1.2687463492445734|0.045129197861222|4.81|151.0|66|3|sense MSMS UPN48_class_I_Rep_3 7 492.3288879394531 2 492.328611 982.642668 NaN NaN NaN NaN NaN NaN NaN 65.449 1 68.956 68.456 69.456 3.5077 0 0 0 0.10427 1 14791 14791 23.79 0 1 + 43900 32566 27817 27829 50536 50536 0.1506526503923169 TIMFVKMR 8 Unmodified _TIMFVKMR_ 0 0 0 REV__Tigger2a_dup570|chr2:230458083-230458505:-|1.2528705706027663|0.1613741848900043|2.96|151.0|1|1|sense REV__Tigger2a_dup570|chr2:230458083-230458505:-|1.2528705706027663|0.1613741848900043|2.96|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 513.2747802734375 2 513.285366 1024.55618 NaN NaN NaN NaN NaN NaN NaN 46.996 1 50.515 50.015 51.015 3.5192 0 0 0 0.40625 1 9238 9238 2.3027 0 1 + 43901 32687 27818 27830 50537 50537 0.04488238941371492 TINASQSAL 9 Unmodified _TINASQSAL_ 0 0 0 REV__AluSz_dup88412|chr17:63716096-63716395:-|1.1432893667292674|0.389009815564637|1.56|151.0|15|2|anti-sense REV__AluSz_dup88412|chr17:63716096-63716395:-|1.1432893667292674|0.389009815564637|1.56|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.7395324707031 2 452.740357 903.46616 -0.3623 -0.00016403 -0.57799 -0.00026168 -0.94029 -0.00042571 452.7399029759594 34.839 0.43854 38.524 38.257 38.695 3.6859 43 35 2 0 0 0 0.47763 1 6320 6320 2.9952 0 1 90128 + 43902 17212 27819 27831 50538 50538 0.010566041381480318 TINASQSAL 9 Unmodified _TINASQSAL_ 0 0 0 REV__AluSz_dup88412|chr17:63716096-63716395:-|1.1432893667292674|0.389009815564637|1.56|151.0|15|2|anti-sense REV__AluSz_dup88412|chr17:63716096-63716395:-|1.1432893667292674|0.389009815564637|1.56|151.0|15|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.73980712890625 2 452.740357 903.46616 -0.52929 -0.00023963 -0.40293 -0.00018242 -0.93222 -0.00042205 452.740087880406 35.031 0.51426 38.456 38.227 38.741 3.4253 55 37 2 0 0 0 0.43982 2 6442 6442;6455 5.7319 0 1 72836 + 43903 17212 27819 27831 50539;50540 50539 0.010566041381480318 TINASQSAL 9 Unmodified _TINASQSAL_ 0 0 0 REV__AluSz_dup88412|chr17:63716096-63716395:-|1.1432893667292674|0.389009815564637|1.56|151.0|15|2|anti-sense REV__AluSz_dup88412|chr17:63716096-63716395:-|1.1432893667292674|0.389009815564637|1.56|151.0|15|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 452.740357 903.46616 -0.76359 -0.00034571 -0.37354 -0.00016912 -1.1371 -0.00051482 452.7400917965407 35.221 0.47843 38.485 38.24 38.719 3.2639 -0.0036655 6.1394E-05 NaN 5.7319 46 34 2 NaN NaN NaN NaN 0 NaN NaN 0 77752 + 43904 17212 27819 27831 0.010566041381480318 TINGKEYR 8 Unmodified _TINGKEYR_ 0 0 0 REV__L1MEc_dup14333|chr13:50961821-50962664:-|1.4729023001104615|0.0783472424189168|4.23|150.0|14|2|sense REV__L1MEc_dup14333|chr13:50961821-50962664:-|1.4729023001104615|0.0783472424189168|4.23|150.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 490.7618408203125 2 490.761623 979.508694 NaN NaN NaN NaN NaN NaN NaN 29.598 1 29.598 29.098 30.098 0 0 0 0 0.40472 1 4708 4708 4.3292 0 1 + 43905 28383 27820 27832 50541 50541 0.01811999266374187 TINITPYGEN 10 Unmodified _TINITPYGEN_ 0 0 0 L1M5_dup36402|chr11:9416594-9416894:+|1.279109018948965|0.2506995444162502|2.35|151.0|9|2|sense L1M5_dup36402|chr11:9416594-9416894:+|1.279109018948965|0.2506995444162502|2.35|151.0|9|2|sense L1M5_dup36402|chr11:9416594-9416894:+|1.279109018948965|0.2506995444162502|2.35|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 561.276611328125 2 561.277303 1120.54005 0.17266 9.6909E-05 -0.17847 -0.00010017 -0.0058081 -3.26E-06 561.2770810547216 44.306 0.5509 47.661 47.377 47.927 3.3556 48 35 2 0 0 0 0.56374 1 9166 9166 1.1933 0 1 110100 43906 9148 27821 27833 50542 50542 -0.015394724901852896 TINKLEEL 8 Unmodified _TINKLEEL_ 0 0 0 nc|ENSG00000137221|Q5JTD0-4|TJAP1;nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1 nc|ENSG00000137221|Q5JTD0-4|TJAP1 nc|ENSG00000137221|Q5JTD0-4|TJAP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 480.7243347167969 2 480.274032 958.533512 -0.14895 -7.1537E-05 0.15795 7.5861E-05 0.0090025 4.3237E-06 480.2740381595278 43.122 0.75558 46.48 46.104 46.86 3.358 64 50 2 0 0 0 0.72333 1 8894 8894 13.042 1.4022 1 79942 43907 3015 27822 27834 50543 50543 0.05258634349092972 TINSPHSL 8 Unmodified _TINSPHSL_ 0 0 0 REV__L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|48|3|anti-sense REV__L1ME3E_dup1026|chr3:141958039-141958709:+|1.4245490640814402|0.164545182814336|3.11|151.0|48|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 434.7298583984375 2 434.729792 867.445031 -0.038389 -1.6689E-05 0.13216 5.7453E-05 0.09377 4.0764E-05 434.7296560424924 33.36 0.65587 33.36 33.159 33.815 0 79 53 2 0 0 0 0.82752 1 5803 5803 7.9102 0 1 124400 + 43908 28152 27823 27835 50544 50544 0.006006388292917109 TINYIITFV 9 Unmodified _TINYIITFV_ 0 0 0 REV__L1ME4b_dup18933|chr17:29767654-29767888:-|1.4079052138581103|0.0063127468364648|7.8|151.0|18|2|anti-sense REV__L1ME4b_dup18933|chr17:29767654-29767888:-|1.4079052138581103|0.0063127468364648|7.8|151.0|18|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.3076782226562 2 542.307875 1082.6012 0.46037 0.00024966 0.3962 0.00021486 0.85657 0.00046453 542.3078210675206 82.066 0.13044 85.578 85.536 85.667 3.5122 16 14 2 0 0 0 0.40701 1 20517 20517 7.609 0 1 63520 + 43909 28273 27824 27836 50545 50545 0.06320084279923321 TIPHRTLHY 9 Unmodified _TIPHRTLHY_ 0 0 0 REV__L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|22|1|sense REV__L1PA6_dup2267|chr6:2299837-2303022:+|17.092014451852613|0.3006554191737456|5.83|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.3114624023438 2 569.311815 1136.60908 -0.14397 -8.1966E-05 -0.36357 -0.00020699 -0.50754 -0.00028895 569.3116263778458 32.69 0.76051 35.976 35.695 36.456 3.2867 129 60 3 0 0 0 0.46434 1 5709 5709 4.3292 4.3292 1 194970 + 43910 29856 27825 27837 50546 50546 0.046236563200409364 TIPIKLAK 8 Unmodified _TIPIKLAK_ 0 0 0 L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 442.3009948730469 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.19 115.69 116.69 3.572 0 0 0 0.40604 1 27765 27765 2.5775 0 1 43911 12776 27826 27838 50547 50547 0.14424726696256585 TIPIKLAK 8 Unmodified _TIPIKLAK_ 0 0 0 L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 442.3011474609375 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 89.984 1 93.382 92.882 93.882 3.3976 0 0 0 0.40746 1 22557 22557 0.69038 0 1 43912 12776 27826 27838 50548 50548 0.14424726696256585 TIPIKLAK 8 Unmodified _TIPIKLAK_ 0 0 0 L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 442.3009033203125 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 113.31 1 116.82 116.32 117.32 3.5098 0 0 0 0.40604 1 27791 27791 2.5775 0 1 43913 12776 27826 27838 50549 50549 0.14424726696256585 TIPIKLAK 8 Unmodified _TIPIKLAK_ 0 0 0 L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense L1ME3Cz_dup4134|chr5:139001094-139001627:+|2.2637110146518697|0.0283753874046177|6.32|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 442.30126953125 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 81.588 1 85.245 84.745 85.745 3.6567 0 0 0 0.40746 1 19370 19370 0.69038 0 1 43914 12776 27826 27838 50550 50550 0.14424726696256585 TIPLSVSMT 9 Unmodified _TIPLSVSMT_ 0 0 0 L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 474.06390380859375 2 474.757161 947.499769 0.17535 8.3251E-05 -0.29262 -0.00013892 -0.11727 -5.5674E-05 474.757092388051 49.871 0.52892 53.565 53.337 53.866 3.6946 49 34 2 0 0 0 0.12099 1 10098 10098 6.7232 0 1 88629 43915 10382 27827 27839 50551 50551 0.023918895856809286 TIPLSVSMT 9 Unmodified _TIPLSVSMT_ 0 0 0 L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 474.757161 947.499769 -0.032174 -1.5275E-05 -0.061461 -2.9179E-05 -0.093635 -4.4454E-05 474.75701981163377 50.001 0.54379 53.629 53.331 53.874 3.6285 0.0050921 0.00016563 NaN 6.7232 53 30 2 NaN NaN NaN NaN 0 NaN NaN 0 131940 43916 10382 27827 27839 0.023918895856809286 TIPLSVSMT 9 Unmodified _TIPLSVSMT_ 0 0 0 L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 474.757161 947.499769 0.11487 5.4535E-05 -0.28283 -0.00013428 -0.16796 -7.9742E-05 474.7569723644089 50.202 0.54508 53.545 53.232 53.777 3.3431 -0.078648 -4.456E-05 NaN 6.7232 40 26 2 NaN NaN NaN NaN 0 NaN NaN 0 103770 43917 10382 27827 27839 0.023918895856809286 TIPLSVSMT 9 Unmodified _TIPLSVSMT_ 0 0 0 L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 474.757161 947.499769 0.080941 3.8427E-05 -0.31433 -0.00014923 -0.23339 -0.0001108 474.75700486995015 50.404 0.50915 53.63 53.273 53.782 3.2262 0.0061785 -7.4466E-05 NaN 6.7232 47 27 2 NaN NaN NaN NaN 0 NaN NaN 0 86289 43918 10382 27827 27839 0.023918895856809286 TIPLSVSMT 9 Unmodified _TIPLSVSMT_ 0 0 0 L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense L1MB3_dup17197|chr22:40146968-40147387:+|1.0563984735042058|0.0098463171768069|6.75|151.0|24|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 474.757161 947.499769 0.10548 5.0077E-05 -0.18749 -8.9014E-05 -0.082013 -3.8936E-05 474.75706167505456 50.129 0.46694 53.75 53.439 53.906 3.621 0.12607 4.5965E-05 NaN 6.7232 38 28 2 NaN NaN NaN NaN 0 NaN NaN 0 101580 43919 10382 27827 27839 0.023918895856809286 TIPPAVVF 8 Unmodified _TIPPAVVF_ 0 0 0 REV__THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|9|1|sense REV__THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 422.2510070800781 2 422.252372 842.49019 NaN NaN NaN NaN NaN NaN NaN 108.95 1 112.55 112.05 113.05 3.6046 0 0 0 0.40746 1 26839 26839 0.69038 0 1 + 43920 32289 27828 27840 50552 50552 0.06264489362467884 TIPPILFVIVV 11 Unmodified _TIPPILFVIVV_ 0 0 0 L1MEf_dup6145|chr8:144751298-144752567:+|3.414154595525105|0.339904441585693|3.33|151.0|70|2|anti-sense L1MEf_dup6145|chr8:144751298-144752567:+|3.414154595525105|0.339904441585693|3.33|151.0|70|2|anti-sense L1MEf_dup6145|chr8:144751298-144752567:+|3.414154595525105|0.339904441585693|3.33|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_1 5 404.2635192871094 3 404.265171 1209.77368 NaN NaN NaN NaN NaN NaN NaN 69.291 1 72.746 72.246 73.246 3.4548 0 0 0 0.38417 1 16064 16064 0.50596 0.34663 1 43921 13304 27829 27841 50553 50553 0.17718655687258433 TIPPTEWDP 9 Unmodified _TIPPTEWDP_ 0 0 0 REV__L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|30|2|sense REV__L1PA7_dup4403|chr5:94826807-94829424:-|4.0126862401258965|0.0569576536165532|6.14|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 528.25732421875 2 528.25584 1054.49713 NaN NaN NaN NaN NaN NaN NaN 72.895 1 76.192 75.692 76.692 3.2971 0 0 0 0.38639 1 17892 17892 3.9444 1.0552 1 + 43922 30102 27830 27842 50554 50554 -0.027942425476112476 TIPVYYKF 8 Unmodified _TIPVYYKF_ 0 0 0 Tigger2b_Pri_dup15|chr1:42688184-42689052:+|2.6165165268870942|0.1340395677433685|4.29|151.0|66|3|anti-sense Tigger2b_Pri_dup15|chr1:42688184-42689052:+|2.6165165268870942|0.1340395677433685|4.29|151.0|66|3|anti-sense Tigger2b_Pri_dup15|chr1:42688184-42689052:+|2.6165165268870942|0.1340395677433685|4.29|151.0|66|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7821655273438 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 70.571 1 70.571 70.071 71.071 0 0 0 0 0.40404 1 16224 16224 5.2307 0 1 43923 33340 27831 27843 50555 50555 0.039924300797110845 TIQEKEVI 8 Unmodified _TIQEKEVI_ 0 0 0 nc|ENSG00000283706|Q9UI38|PRSS50 nc|ENSG00000283706|Q9UI38|PRSS50 nc|ENSG00000283706|Q9UI38|PRSS50 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2740478515625 2 480.274032 958.533512 -0.14895 -7.1537E-05 0.15795 7.5861E-05 0.0090025 4.3237E-06 480.2740381595278 43.122 0.75558 46.48 46.104 46.86 3.358 64 50 2 0 0 0 0.82752 1 8883 8883 10.074 0 1 79942 43924 16851 27832 27844 50556 50556 0.05258634349092972 TIQLHNLT 8 Unmodified _TIQLHNLT_ 0 0 0 REV__MER2_dup8269|chr17:46036380-46036683:+|1.8272985984985208|0.323892332939013|2.5|151.0|19|2|anti-sense REV__MER2_dup8269|chr17:46036380-46036683:+|1.8272985984985208|0.323892332939013|2.5|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_2 3 470.2530212402344 2 470.266542 938.51853 NaN NaN NaN NaN NaN NaN NaN 24.646 1 28.128 27.628 28.628 3.483 0 0 0 0.40753 1 3300 3300 0.6015 0 1 + 43925 31151 27833 27845 50557 50557 0.04681187271739873 TIQQEELY 8 Unmodified _TIQQEELY_ 0 0 0 L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2694702148438 2 512.253297 1022.49204 0.28202 0.00014446 -0.28987 -0.00014848 -0.0078482 -4.0203E-06 512.2529878607842 73.644 0.56635 76.88 76.606 77.172 3.2363 103 52 3 0 0 0 0.82752 1 18177 18177 10.183 0.10947 1 168330 43926 14986 27834 27846 50558 50558 -0.01830546410246825 TIQQEELY 8 Unmodified _TIQQEELY_ 0 0 0 L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 512.253297 1022.49204 0.24159 0.00012375 -0.23001 -0.00011782 0.011579 5.9312E-06 512.25289495294 73.472 0.63736 76.859 76.556 77.193 3.3861 -0.029746 3.6137E-05 NaN 10.183 101 58 2 NaN NaN NaN NaN 0 NaN NaN 0 149090 43927 14986 27834 27846 -0.01830546410246825 TIQQEELY 8 Unmodified _TIQQEELY_ 0 0 0 L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|78|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 512.253297 1022.49204 0.11614 5.9494E-05 -0.22636 -0.00011596 -0.11022 -5.6462E-05 512.252943413313 73.621 0.53957 76.926 76.696 77.235 3.3048 0.037756 3.987E-05 NaN 10.183 88 49 2 NaN NaN NaN NaN 0 NaN NaN 0 180920 43928 14986 27834 27846 -0.01830546410246825 TIQRNLFEI 9 Unmodified _TIQRNLFEI_ 0 0 0 REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|18|2|sense REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3195190429688 2 567.319306 1132.62406 0.41218 0.00023384 -0.19113 -0.00010843 0.22105 0.00012541 567.3190481444375 46.123 0.7818 49.642 49.244 50.026 3.5192 67 52 2 0 0 0 0.26468 2 8965 8965;9019 16.149 0 1 185900 + 43929 27725 27835 27847 50559;50560 50559 0.06305103397380662 TIQRNLFEI 9 Unmodified _TIQRNLFEI_ 0 0 0 REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|18|2|sense REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.3189697265625 2 567.319306 1132.62406 0.39979 0.00022681 -0.31613 -0.00017935 0.083655 4.7459E-05 567.3190615782225 45.83 0.77603 49.588 49.175 49.951 3.7579 97 57 2 0 0 0 0.32682 1 8844 8844 12.241 0 1 172590 + 43930 27725 27835 27847 50561 50561 0.06305103397380662 TIQRNLFEI 9 Unmodified _TIQRNLFEI_ 0 0 0 REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|18|2|sense REV__L1ME1_dup28053|chr18:180887-182095:-|1.5950398408054536|0.0281598859234709|5.82|150.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.319580078125 2 567.319306 1132.62406 0.36984 0.00020982 -0.17237 -9.7789E-05 0.19747 0.00011203 567.3191446277219 45.892 0.82178 49.528 49.193 50.015 3.6369 94 59 2 0 0 0 0.33908 1 8841 8841 11.495 0 1 148750 + 43931 27725 27835 27847 50562 50562 0.06305103397380662 TIREFISTI 9 Unmodified _TIREFISTI_ 0 0 0 REV__MER102a_dup781|chr5:32148030-32148309:-|2.074690840154019|0.1102613494925599|4.23|151.0|14|2|anti-sense REV__MER102a_dup781|chr5:32148030-32148309:-|2.074690840154019|0.1102613494925599|4.23|151.0|14|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.3086547851562 2 540.308406 1078.60226 0.36495 0.00019719 0.050008 2.702E-05 0.41496 0.00022421 540.3084151353327 66.375 0.88064 69.733 69.382 70.262 3.3576 112 60 2 0 0 0 0.37599 1 16030 16030 9.3831 0 1 296040 + 43932 31062 27836 27848 50563 50563 0.0661029864882039 TIRFLVMAYRK 11 Unmodified _TIRFLVMAYRK_ 0 0 0 REV__ENSG00000188394|ENST00000616002|GPR21 REV__ENSG00000188394|ENST00000616002|GPR21 MULTI-MSMS UPN46_class_I_Rep_3 1 466.60791015625 3 466.607713 1396.80131 0.23008 0.00010736 0.56039 0.00026148 0.79047 0.00036884 466.6079218230644 96.974 0.18192 96.974 96.87 97.052 0 46 22 3 0 0 0 0.6724 1 23576 23576 1.2148 0 1 536850 + 43933 20969 27837 27849 50564 50564 0.11878235675840187 TIRFLVMAYRK 11 Unmodified _TIRFLVMAYRK_ 0 0 0 REV__ENSG00000188394|ENST00000616002|GPR21 REV__ENSG00000188394|ENST00000616002|GPR21 MULTI-MATCH UPN47_class_I_Rep_2 3 3 466.607713 1396.80131 0.20565 9.5957E-05 0.22196 0.00010357 0.42761 0.00019953 466.6077256903522 93.461 0.75302 96.93 96.409 97.162 3.4687 0.019621 -0.00010244 NaN 1.2148 165 107 2 NaN NaN NaN NaN 0 NaN NaN 0 325750 + 43934 20969 27837 27849 0.11878235675840187 TIRFLVMAYRK 11 Unmodified _TIRFLVMAYRK_ 0 0 0 REV__ENSG00000188394|ENST00000616002|GPR21 REV__ENSG00000188394|ENST00000616002|GPR21 MULTI-MATCH UPN48_class_I_Rep_3 7 3 466.607713 1396.80131 0.20248 9.448E-05 0.28058 0.00013092 0.48306 0.0002254 466.6077890921209 92.949 0.29022 96.827 96.726 97.017 3.8782 -0.08365 -2.039E-05 NaN 1.2148 56 40 2 NaN NaN NaN NaN 0 NaN NaN 0 595070 + 43935 20969 27837 27849 0.11878235675840187 TIRHHYIL 8 Unmodified _TIRHHYIL_ 0 0 0 REV__L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|305|3|anti-sense REV__L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|305|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 526.314697265625 2 526.803626 1051.5927 0.1117 5.8846E-05 0.49828 0.00026249 0.60998 0.00032134 526.8038913566868 71.443 0.28883 74.733 74.633 74.922 3.2899 26 24 2 0 0 0 0.72333 1 17461 17461 4.3292 1.7518 1 39446 + 43936 25295 27838 27850 50565 50565 0.06896575153928097 TIRHLLLM 8 Unmodified _TIRHLLLM_ 0 0 0 REV__L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|10|1|sense REV__L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 498.8036193847656 2 498.80478 995.595007 NaN NaN NaN NaN NaN NaN NaN 50.661 1 54.29 53.79 54.79 3.6285 0 0 0 0.4044 1 11128 11128 4.756 0 1 + 43937 30022 27839 27851 50566 50566 0.0970328756740173 TIRKQKQF 8 Unmodified _TIRKQKQF_ 0 0 0 HAL1_dup15550|chr11:46061416-46062555:-|1.1269904716258872|0.0317505095226434|5.15|151.0|1|1|sense HAL1_dup15550|chr11:46061416-46062555:-|1.1269904716258872|0.0317505095226434|5.15|151.0|1|1|sense HAL1_dup15550|chr11:46061416-46062555:-|1.1269904716258872|0.0317505095226434|5.15|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 524.796630859375 2 524.816733 1047.61891 NaN NaN NaN NaN NaN NaN NaN 61.956 1 61.956 61.456 62.456 0 0 0 0 0.40746 1 13824 13824 0.69038 0 1 43938 7813 27840 27852 50567 50567 0.09700844325402613 TIRNKYLLF 9 Unmodified _TIRNKYLLF_ 0 0 0 REV__L1ME4a_dup26151|chr13:51699532-51700270:+|1.6201626311441129|0.0320997709192873|5.66|151.0|51|3|anti-sense REV__L1ME4a_dup26151|chr13:51699532-51700270:+|1.6201626311441129|0.0320997709192873|5.66|151.0|51|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 584.7872924804688 2 584.347866 1166.68118 0.40087 0.00023425 -0.068788 -4.0196E-05 0.33209 0.00019405 584.3476783214531 36.148 0.12224 36.148 36.107 36.229 0 13 9 2 0 0 0 0.12462 1 6690 6690 1.8442 0 1 242260 + 43939 28224 27841 27853 50568 50568 0.10450570673742732 TIRRTPRPGP 10 Unmodified _TIRRTPRPGP_ 0 0 0 REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF MSMS UPN47_class_I_Rep_2 3 575.8427734375 2 575.843813 1149.67307 NaN NaN NaN NaN NaN NaN NaN 83.886 1 87.298 86.798 87.798 3.4116 0 0 0 0.53105 1 20919 20919 1.4819 0 1 + 43940 22920 27842 27854 50569 50569 0.10422436476983421 TIRSSSISYSQ 11 Unmodified _TIRSSSISYSQ_ 0 0 0 ENST00000524233.1_1_8:101280952-101287235:-|nuORF;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A ENST00000524233.1_1_8:101280952-101287235:-|nuORF ENST00000524233.1_1_8:101280952-101287235:-|nuORF MSMS UPN48_class_I_Rep_3 7 614.8096923828125 2 614.812042 1227.60953 NaN NaN NaN NaN NaN NaN NaN 31.49 1 35.192 34.692 35.692 3.7015 0 0 0 0.38417 1 4668 4668 0.96228 0.2719 1 43941 845 27843 27855 50570 50570 0.0048298645856448275 TIRTKISVPI 10 Unmodified _TIRTKISVPI_ 0 0 0 L1M4a1_dup1007|chr5:176266119-176267733:+|1.5036606618813502|0.0840637037634051|4.16|151.0|47|3|sense;L1M4a1_dup1021|chr5:177644584-177646198:-|1.7637274126722595|0.0822890490992092|4.42|151.0|46|3|sense L1M4a1_dup1007|chr5:176266119-176267733:+|1.5036606618813502|0.0840637037634051|4.16|151.0|47|3|sense L1M4a1_dup1007|chr5:176266119-176267733:+|1.5036606618813502|0.0840637037634051|4.16|151.0|47|3|sense MSMS UPN48_class_I_Rep_3 7 564.37939453125 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 108.38 1 112.05 111.55 112.55 3.6751 0 0 0 0.53105 1 25645 25645 3.2813 0.28607 1 43942 8934 27844 27856 50571 50571 0.14910839845219925 TIRVEVSYF 9 Unmodified _TIRVEVSYF_ 0 0 0 REV__ENSG00000256188|ENST00000539585|TAS2R30 REV__ENSG00000256188|ENST00000539585|TAS2R30 MULTI-MSMS UPN47_class_I_Rep_1 2 557.300048828125 2 557.300581 1112.58661 0.40931 0.00022811 0.022623 1.2608E-05 0.43194 0.00024072 557.3004994913763 61.956 0.72933 65.324 65.083 65.812 3.3681 111 53 3 0 0 0 0.42249 1 14507 14507 6.7232 0.51738 1 200790 + 43943 21384 27845 27857 50572 50572 0.03482012131757983 TIRYYAHY 8 Unmodified _TIRYYAHY_ 0 0 0 L1PA15_dup7513|chr16:23964998-23965432:-|1.2411167367909557|0.003986015671063|8.28|150.0|12|2|sense L1PA15_dup7513|chr16:23964998-23965432:-|1.2411167367909557|0.003986015671063|8.28|150.0|12|2|sense L1PA15_dup7513|chr16:23964998-23965432:-|1.2411167367909557|0.003986015671063|8.28|150.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 543.7603759765625 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 20.823 1 24.173 23.673 24.673 3.3496 0 0 0 0.40738 1 2220 2220 0.79363 0.10326 1 43944 13987 27846 27858 50573 50573 -0.009914103539813368 TISLQRVSK 9 Unmodified _TISLQRVSK_ 0 0 0 Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|59|3|anti-sense Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|59|3|anti-sense Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|59|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.3113403320312 2 516.314023 1030.61349 0.34621 0.00017875 -1.8638 -0.00096228 -1.5175 -0.00078353 516.3123664992954 96.726 0.086761 100.51 100.44 100.53 3.7804 15 10 2 0 0 0 0.49026 1 22977 22977 1.6526 0.32309 1 128320 43945 33425 27847 27859 50574 50574 0.09941120742928433 TISLQRVSK 9 Unmodified _TISLQRVSK_ 0 0 0 Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|59|3|anti-sense Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|59|3|anti-sense Tigger4_dup397|chr4:53982250-53983151:-|1.0864726507880915|0.1957725061365684|2.47|151.0|59|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 516.314023 1030.61349 0.34661 0.00017896 -0.6815 -0.00035187 -0.33489 -0.00017291 516.3131488187408 97.058 0.036407 100.47 100.46 100.49 3.414 -0.01729 0.00074237 NaN 1.6526 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 27797 43946 33425 27847 27859 0.09941120742928433 TISLRRATT 9 Unmodified _TISLRRATT_ 0 0 0 REV__ENSG00000170456|ENST00000389082|DENND5B REV__ENSG00000170456|ENST00000389082|DENND5B MSMS UPN48_class_I_Rep_3 7 509.8037109375 2 509.803823 1017.59309 NaN NaN NaN NaN NaN NaN NaN 77.713 1 81.315 80.815 81.815 3.6016 0 0 0 0.39518 1 18373 18373 1.8442 1.1539 1 + 43947 20363 27848 27860 50575 50575 0.08499950083125896 TISPRRRF 8 Unmodified _TISPRRRF_ 0 0 0 ENST00000237654.8_1_4:77996857-77997100:-|nuORF ENST00000237654.8_1_4:77996857-77997100:-|nuORF ENST00000237654.8_1_4:77996857-77997100:-|nuORF MSMS UPN48_class_I_Rep_1 5 516.8045043945312 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 89.292 1 92.917 92.417 93.417 3.6255 0 0 0 0.4044 1 21437 21437 4.756 0.42677 1 43948 5896 27849 27861 50576 50576 0.08431093385456734 TISQPLHQE 9 Unmodified _TISQPLHQE_ 0 0 0 Tigger1_dup6027|chr7:152377755-152378647:+|2.24107952039376|0.0098744013419548|7.83|151.0|50|2|anti-sense Tigger1_dup6027|chr7:152377755-152378647:+|2.24107952039376|0.0098744013419548|7.83|151.0|50|2|anti-sense Tigger1_dup6027|chr7:152377755-152378647:+|2.24107952039376|0.0098744013419548|7.83|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7736206054688 2 526.772188 1051.52982 NaN NaN NaN NaN NaN NaN NaN 27.531 1 31.162 30.662 31.662 3.6311 0 0 0 0.3967 1 3661 3661 1.4819 0 1 43949 33142 27850 27862 50577 50577 0.006119645752278302 TISSERKSF 9 Unmodified _TISSERKSF_ 0 0 0 nc|ENSG00000126091|Q11203-17|ST3GAL3;nc|ENSG00000126091|Q11203-24|ST3GAL3;ENST00000489897.5_1_1:44323954-44395852:+|nuORF;nc|ENSG00000126091|Q11203-22|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 nc|ENSG00000126091|Q11203-17|ST3GAL3 MULTI-MSMS UPN48_class_I_Rep_3 7 527.7799682617188 2 527.780013 1053.54547 0.36698 0.00019368 -2.4015 -0.0012675 -2.0346 -0.0010738 527.7797704766313 31.832 0.50879 35.533 35.22 35.728 3.7015 95 57 2 0 0 0 0.49026 1 4709 4709 1.6526 0 1 93504 43950 7061 27851 27863 50578 50578 0.02084251092287559 TISSKILHRIQ 11 Unmodified _TISSKILHRIQ_ 0 0 0 REV__L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|231|3|sense REV__L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|231|3|sense MSMS UPN46_class_I_Rep_3 1 648.3933715820312 2 648.393336 1294.77212 NaN NaN NaN NaN NaN NaN NaN 104.73 1 104.73 104.23 105.23 0 0 0 0 0.38417 1 25559 25559 1.1933 0 1 + 43951 30541 27852 27864 50579 50579 0.13652414651232903 TITDIEHF 8 Unmodified _TITDIEHF_ 0 0 0 L1PA16_dup5806|chr6:166963717-166964434:-|1.956752044205519|0.3053330835252035|2.68|151.0|40|3|anti-sense L1PA16_dup5806|chr6:166963717-166964434:-|1.956752044205519|0.3053330835252035|2.68|151.0|40|3|anti-sense L1PA16_dup5806|chr6:166963717-166964434:-|1.956752044205519|0.3053330835252035|2.68|151.0|40|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.2424621582031 2 488.242732 974.470912 0.21947 0.00010715 0.051219 2.5007E-05 0.27069 0.00013216 488.2426424180462 68.999 0.77261 72.274 71.919 72.691 3.2746 121 62 3 0 0 0 0.82752 1 16648 16648 5.2307 0 1 179770 43952 14100 27853 27865 50580 50580 -0.01734511719087095 TITKRWKQC 9 Unmodified _TITKRWKQC_ 0 0 0 L1MB3_dup10497|chr10:96048448-96049091:-|1.4143260322407305|0.0489005094461122|4.85|150.0|4|1|sense L1MB3_dup10497|chr10:96048448-96049091:-|1.4143260322407305|0.0489005094461122|4.85|150.0|4|1|sense L1MB3_dup10497|chr10:96048448-96049091:-|1.4143260322407305|0.0489005094461122|4.85|150.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 582.3213500976562 2 582.321325 1162.6281 NaN NaN NaN NaN NaN NaN NaN 51.299 1 54.909 54.409 55.409 3.6105 0 0 0 0.39428 1 10498 10498 2.0598 1.4583 1 43953 10317 27854 27866 50581 50581 0.05328869619438592 TITLRNHR 8 Unmodified _TITLRNHR_ 0 0 0 REV__Tigger7_dup1795|chrX:44915528-44916213:+|2.540736743785437|0.0098694485511298|8.01|151.0|45|3|anti-sense REV__Tigger7_dup1795|chrX:44915528-44916213:+|2.540736743785437|0.0098694485511298|8.01|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_3 7 505.7937316894531 2 505.796332 1009.57811 NaN NaN NaN NaN NaN NaN NaN 74.936 1 78.502 78.002 79.002 3.5659 0 0 0 0.40331 1 17577 17577 6.2058 1.4498 1 + 43954 32808 27855 27867 50582 50582 0.07370503005790852 TITMRVPI 8 Unmodified _TITMRVPI_ 0 0 0 REV__L1PA4_dup6539|chr9:62818106-62820097:-|2.715755008284287|0.3652598472434726|2.89|151.0|4|1|sense REV__L1PA4_dup6539|chr9:62818106-62820097:-|2.715755008284287|0.3652598472434726|2.89|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 465.7773132324219 2 465.775688 929.536823 NaN NaN NaN NaN NaN NaN NaN 73.414 1 76.801 76.301 77.301 3.3861 0 0 0 0.40625 1 18025 18025 2.3027 0 1 + 43955 29664 27856 27868 50583 50583 0.06923605922111165 TITQFLKKQ 9 Unmodified _TITQFLKKQ_ 0 0 0 L1ME3G_dup14606|chr17:30777858-30778133:+|2.598824673420119|0.1630480049983875|3.99|151.0|2|1|sense L1ME3G_dup14606|chr17:30777858-30778133:+|2.598824673420119|0.1630480049983875|3.99|151.0|2|1|sense L1ME3G_dup14606|chr17:30777858-30778133:+|2.598824673420119|0.1630480049983875|3.99|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 553.8302612304688 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 82.376 1 82.376 81.876 82.876 0 0 0 0 0.39598 1 19511 19511 1.6526 0 1 43956 12828 27857 27869 50584 50584 0.10094577919812764 TITTRLEL 8 Unmodified _TITTRLEL_ 0 0 0 REV__L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|33|3|sense REV__L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.78253173828125 2 473.782025 945.549496 -0.29224 -0.00013846 0.0082515 3.9094E-06 -0.28399 -0.00013455 473.7819276235579 19.338 0.52415 22.734 22.353 22.878 3.3963 79 53 2 0 0 0 0.82752 1 1745 1745 0.69038 0 1 33971 + 43957 25922 27858 27870 50585 50585 0.07454340585979935 TITTRLEL 8 Unmodified _TITTRLEL_ 0 0 0 REV__L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|33|3|sense REV__L1MB3_dup8522|chr9:92566326-92567371:+|1.2048822319828612|0.0137521386986517|6.45|151.0|33|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 473.782025 945.549496 -0.37559 -0.00017795 0.28372 0.00013442 -0.09187 -4.3527E-05 473.7821524265209 18.891 0.33429 22.472 22.357 22.691 3.5806 -0.13117 0.00014443 NaN 0.69038 58 41 2 NaN NaN NaN NaN 0 NaN NaN 0 41570 + 43958 25922 27858 27870 0.07454340585979935 TITVFVKGFR 10 Unmodified _TITVFVKGFR_ 0 0 0 REV__L1MA3_dup7710|chr15:44704316-44705184:-|1.2110767152508353|0.0415794622001854|4.86|151.0|60|3|anti-sense REV__L1MA3_dup7710|chr15:44704316-44705184:-|1.2110767152508353|0.0415794622001854|4.86|151.0|60|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3482666015625 2 584.347866 1166.68118 0.52618 0.00030747 -0.082799 -4.8383E-05 0.44338 0.00025909 584.3477711865612 109.7 0.55637 109.7 109.57 110.13 0 126 45 3 0 0 0 0.54466 1 27096 27096 6.2058 2.2614 1 5349500 + 43959 25108 27859 27871 50586 50586 0.10450570673765469 TITVNPANTY 10 Unmodified _TITVNPANTY_ 0 0 0 ENSG00000189186|ENST00000451261|DCAF8L2 ENSG00000189186|ENST00000451261|DCAF8L2 ENSG00000189186|ENST00000451261|DCAF8L2 MULTI-MSMS UPN47_class_I_Rep_3 4 547.2787475585938 2 547.279846 1092.54514 -0.33216 -0.00018178 0.34858 0.00019077 0.016424 8.9887E-06 547.2800573897256 20.961 0.83692 24.311 24.039 24.875 3.3496 115 74 2 0 0 0 0.55148 1 2356 2356 5.2969 0 1 73537 43960 5274 27860 27872 50587 50587 0.002568313724395921 TITVSYRV 8 Unmodified _TITVSYRV_ 0 0 0 L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|41|1|anti-sense;L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|76|2|anti-sense;L1MC1_dup9594|chr12:12774575-12775608:+|2.1203102811907617|0.0437323548000231|5.6|151.0|38|1|anti-sense;L1MC2_dup2295|chr6:110767831-110768870:+|1.2438415248420789|0.0078070273672057|7.32|150.0|52|2|anti-sense;L1MC1_dup8378|chr10:838036-839436:+|3.203870730061562|0.0300321489131844|6.74|150.0|47|1|anti-sense L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|41|1|anti-sense L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_3 7 469.7693176269531 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 30.776 1 34.491 33.991 34.991 3.7146 0 0 0 0.40604 1 4479 4479 2.5775 0 1 43961 11109 27861 27873 50588 50588 0.052020714145328384 TIVNILTNR 9 Unmodified _TIVNILTNR_ 0 0 0 ENST00000557937.5_1_15:60655071-60678274:-|nuORF;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2 ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENST00000557937.5_1_15:60655071-60678274:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 522.1361694335938 2 522.314023 1042.61349 0.41306 0.00021575 -0.67202 -0.00035101 -0.25897 -0.00013526 522.3135680557818 52.326 0.52637 55.965 55.819 56.345 3.639 52 43 2 0 0 0 0.11198 1 10849 10849 15.248 5.8654 1 123620 43962 4967 27862 27874 50589 50589 0.0938912074293512 TIVRHLQY 8 Unmodified _TIVRHLQY_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MSMS UPN48_class_I_Rep_3 7 515.294921875 2 515.295633 1028.57671 NaN NaN NaN NaN NaN NaN NaN 42.336 1 45.978 45.478 46.478 3.6415 0 0 0 0.40501 1 7746 7746 3.9444 0 1 43963 1994 27863 27875 50590 50590 0.06356868917032443 TIVRHLQY 8 Unmodified _TIVRHLQY_ 0 0 0 ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 ENSG00000111913|ENST00000643898|RIPOR2 MSMS UPN48_class_I_Rep_3 7 515.29541015625 2 515.295633 1028.57671 NaN NaN NaN NaN NaN NaN NaN 42.457 1 46.099 45.599 46.599 3.6415 0 0 0 0.39436 1 7783 7783 10.074 4.8433 1 43964 1994 27863 27875 50591 50591 0.06356868917032443 TIVVLVYSP 9 Unmodified _TIVVLVYSP_ 0 0 0 L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|256|2|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|256|2|anti-sense L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|256|2|anti-sense MSMS UPN47_class_I_Rep_3 4 495.7801513671875 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 82.39 1 85.727 85.227 86.227 3.337 0 0 0 0.29868 1 20648 20648 10.824 0 1 43965 14484 27864 27876 50592 50592 0.0845269925117691 TIWIHILRKRR 11 Unmodified _TIWIHILRKRR_ 0 0 0 ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|4|intron;nc|ENSG00000148358|Q5VW38-3|GPR107;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|5|intron;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|1|intron;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|2|intron;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|7|intron;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107 ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron MSMS UPN47_class_I_Rep_1 2 497.98419189453125 3 497.984283 1490.93102 NaN NaN NaN NaN NaN NaN NaN 83.062 1 86.601 86.101 87.101 3.5386 0 0 0 0.38417 1 20765 20765 0 0 1 43966 3503 27865 27877 50593 50593 0.20519173069988028 TIWIHILRKRR 11 Unmodified _TIWIHILRKRR_ 0 0 0 ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|4|intron;nc|ENSG00000148358|Q5VW38-3|GPR107;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|5|intron;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|1|intron;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|2|intron;ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|7|intron;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107 ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron ENSG00000148358.20,GPR107,chr9,+,I14.1,130107540,130110369|30|8.58|3|intron MSMS UPN47_class_I_Rep_1 2 497.98406982421875 3 497.984283 1490.93102 NaN NaN NaN NaN NaN NaN NaN 86.281 1 89.896 89.396 90.396 3.6153 0 0 0 0.38417 1 21551 21551 0 0 1 43967 3503 27865 27877 50594 50594 0.20519173069988028 TIWLVGTGAI 10 Unmodified _TIWLVGTGAI_ 0 0 0 L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|69|1|anti-sense L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|69|1|anti-sense L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|69|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 516.2254028320312 2 515.800217 1029.58588 0.24804 0.00012794 -3.0587 -0.0015777 -2.8107 -0.0014498 515.7979219117889 47 0.090874 50.749 50.7 50.791 3.7494 6 5 2 0 0 0 0.84575 1 9242 9242 19.257 1.1106 1 48554 43968 12060 27866 27878 50595 50595 0.07227217482704873 TIWSSFEAY 9 Unmodified _TIWSSFEAY_ 0 0 0 REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 552.2560424804688 2 552.25584 1102.49713 0.37185 0.00020536 0.26692 0.00014741 0.63878 0.00035277 552.2557764578696 66.662 0.74594 70.02 69.711 70.457 3.3576 110 52 3 0 0 0 0.15122 2 16059 15943;16059 25.399 2.663 1 304450 + 43969 22981 27867 27879 50596;50597 50597 -0.050022425476072385 TIWSSFEAY 9 Unmodified _TIWSSFEAY_ 0 0 0 REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF MSMS UPN47_class_I_Rep_1 2 552.254150390625 2 552.25584 1102.49713 NaN NaN NaN NaN NaN NaN NaN 67.01 1 70.371 69.871 70.871 3.3611 0 0 0 0.096434 1 16088 16088 25.399 2.663 1 + 43970 22981 27867 27879 50598 50598 -0.050022425476072385 TIWSSFEAY 9 Unmodified _TIWSSFEAY_ 0 0 0 REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 552.2554931640625 2 552.25584 1102.49713 0.36993 0.0002043 0.064504 3.5623E-05 0.43443 0.00023992 552.2557597077138 66.858 0.78513 70.121 69.852 70.637 3.2636 110 58 2 0 0 0 0.15122 3 16183 16028;16183;16209 25.399 2.3073 1 330250 + 43971 22981 27867 27879 50599;50600;50601 50600 -0.050022425476072385 TIWSSFEAY 9 Unmodified _TIWSSFEAY_ 0 0 0 REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF REV__ENST00000554401.1_1_14:102550750-102550891:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 552.2564697265625 2 552.25584 1102.49713 0.43349 0.0002394 0.077223 4.2647E-05 0.51071 0.00028205 552.25567565511 66.932 0.96896 70.123 69.788 70.757 3.1914 155 73 3 0 0 0 0.15122 4 16107 16087;16107;16263;16332 25.399 2.663 1 315980 + 43972 22981 27867 27879 50602;50603;50604;50605 50603 -0.050022425476072385 TIWYIFLV 8 Unmodified _TIWYIFLV_ 0 0 0 REV__L1PB1_dup1471|chr2:151471244-151473198:-|2.8536458651759493|0.4824519537984613|2.56|151.0|62|1|anti-sense REV__L1PB1_dup1471|chr2:151471244-151473198:-|2.8536458651759493|0.4824519537984613|2.56|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 527.8004760742188 2 527.802229 1053.5899 NaN NaN NaN NaN NaN NaN NaN 84.971 1 84.971 84.471 85.471 0 0 0 0 0.40738 1 20246 20246 0.79363 0 1 + 43973 29505 27868 27880 50606 50606 0.06525306976413958 TIWYVFVV 8 Unmodified _TIWYVFVV_ 0 0 0 L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|225|1|anti-sense;L1P3_dup2652|chr12:11256066-11261811:+|5.774046497810674|0.102807162033627|5.81|151.0|327|3|anti-sense;L1P2_dup1033|chrX:110238415-110241534:+|1.9989285354908304|0.0624600329596591|5.0|151.0|131|2|anti-sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|225|1|anti-sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|225|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 513.78662109375 2 513.786579 1025.5586 0.17831 9.1612E-05 -1.0269 -0.00052762 -0.84862 -0.00043601 513.7860529478165 53.24 0.72278 56.566 56.288 57.011 3.3266 72 44 2 0 0 0 0.82752 1 11937 11937 13.508 4.9146 1 102610 43974 13538 27869 27881 50607 50607 0.04684733942326602 TIYFGHDLY 9 Unmodified _TIYFGHDLY_ 0 0 0 REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|7|1|sense REV__L1MC5a_dup13919|chr15:65543104-65543894:+|1.1278303466464266|0.0222022957583975|5.67|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 564.76953125 2 564.771657 1127.52876 NaN NaN NaN NaN NaN NaN NaN 50.948 1 54.545 54.045 55.045 3.5972 0 0 0 0.39518 1 11216 11216 1.8442 0 1 + 43975 27122 27870 27882 50608 50608 -0.029902497936518557 TIYKNQFTV 9 Unmodified _TIYKNQFTV_ 0 0 0 L1MA8_dup9309|chr15:57292535-57294017:+|2.883071122075444|0.2801598532182615|3.36|151.0|13|1|sense L1MA8_dup9309|chr15:57292535-57294017:+|2.883071122075444|0.2801598532182615|3.36|151.0|13|1|sense L1MA8_dup9309|chr15:57292535-57294017:+|2.883071122075444|0.2801598532182615|3.36|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.3005981445312 2 557.300581 1112.58661 0.44327 0.00024704 -0.22422 -0.00012496 0.21906 0.00012208 557.3004184744227 62.295 0.70566 65.554 65.243 65.948 3.2594 95 46 3 0 0 0 0.38714 1 14628 14628 8.7454 0 1 242150 43976 10072 27871 27883 50609 50609 0.03482012131757983 TIYMYLLLLL 10 Unmodified _TIYMYLLLLL_ 0 0 0 REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP MSMS UPN46_class_I_Rep_3 1 628.3739013671875 2 628.372161 1254.72977 NaN NaN NaN NaN NaN NaN NaN 35.49 1 35.49 34.99 35.99 0 0 0 0 0.53105 1 6468 6468 0.40072 0 1 + 43977 20024 27872 27884 50610 50610 0.1125930319865347 TIYNLFCQF 9 Unmodified _TIYNLFCQF_ 0 0 0 REV__MER102b_dup1969|chr9:77846068-77846402:+|1.6765178506295104|0.0405826592990708|5.37|150.0|18|3|anti-sense REV__MER102b_dup1969|chr9:77846068-77846402:+|1.6765178506295104|0.0405826592990708|5.37|150.0|18|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.7757568359375 2 574.775885 1147.53722 -0.3846 -0.00022106 -0.086001 -4.9431E-05 -0.47061 -0.00027049 574.7758093326491 16.731 0.53885 20.092 19.96 20.499 3.3619 85 59 2 0 0 0 0.47197 1 1137 1137 3.5965 1.5367 1 53677 + 43978 31064 27873 27885 50611 50611 -0.030650191486984113 TIYRIQQK 8 Unmodified _TIYRIQQK_ 0 0 0 L1MA4_dup6912|chr10:98146731-98149989:-|3.1906491463885134|0.2836517648955096|3.49|151.0|7|1|sense L1MA4_dup6912|chr10:98146731-98149989:-|3.1906491463885134|0.2836517648955096|3.49|151.0|7|1|sense L1MA4_dup6912|chr10:98146731-98149989:-|3.1906491463885134|0.2836517648955096|3.49|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 525.3068237304688 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 64.915 1 68.394 67.894 68.894 3.4792 0 0 0 0.40604 1 14715 14715 2.5775 0 1 43979 9720 27874 27886 50612 50612 0.08057138088497595 TIYVFLFM 8 Unmodified _TIYVFLFM_ 0 0 0 REV__ENSG00000255713|ENST00000545221|OR4D2 REV__ENSG00000255713|ENST00000545221|OR4D2 MSMS UPN46_class_I_Rep_3 1 517.274658203125 2 517.274989 1032.53543 NaN NaN NaN NaN NaN NaN NaN 24.566 1 24.566 24.066 25.066 0 0 0 0 0.40364 1 3246 3246 5.7604 1.0044 1 + 43980 21381 27875 27887 50613 50613 0.020459718333540877 TKAEVPWAGY 10 Unmodified _TKAEVPWAGY_ 0 0 0 L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|135|2|anti-sense L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|135|2|anti-sense L1PB4_dup138|chr1:92652716-92655559:+|1.210086171965|0.2010665341310686|2.59|150.0|135|2|anti-sense MSMS UPN48_class_I_Rep_2 6 561.2845458984375 2 561.284931 1120.55531 NaN NaN NaN NaN NaN NaN NaN 48.222 1 51.958 51.458 52.458 3.7361 0 0 0 0.53105 1 9611 9611 2.9952 0.93549 1 43981 15293 27876 27888 50614 50614 -0.00014560902332050318 TKAKIKKWY 9 Unmodified _TKAKIKKWY_ 0 0 0 L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|77|3|sense L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|77|3|sense L1MA9_dup14796|chr17:66699816-66702097:+|2.7074536240908285|0.3647971237062093|2.89|151.0|77|3|sense MSMS UPN48_class_I_Rep_2 6 583.3590698242188 2 583.358234 1164.70191 NaN NaN NaN NaN NaN NaN NaN 71.975 1 75.526 75.026 76.026 3.5505 0 0 0 0.4007 1 16824 16824 0.52476 0 1 43982 10116 27877 27889 50615 50615 0.12615161053417978 TKAKMDRRD 9 Unmodified _TKAKMDRRD_ 0 0 0 L1MA2_dup7283|chr20:13480819-13482620:-|1.1297398067453797|0.0650941210651263|4.12|151.0|5|1|sense L1MA2_dup7283|chr20:13480819-13482620:-|1.1297398067453797|0.0650941210651263|4.12|151.0|5|1|sense L1MA2_dup7283|chr20:13480819-13482620:-|1.1297398067453797|0.0650941210651263|4.12|151.0|5|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 560.2969970703125 2 560.798214 1119.58188 0.33848 0.00018982 -0.30024 -0.00016838 0.038236 2.1443E-05 560.7980248413154 58.648 0.31787 61.814 61.624 61.942 3.1658 29 20 2 0 0 0 0.12281 1 13620 13620 4.3292 0 1 79442 43983 9451 27878 27890 50616 50616 0.026868047173593368 TKALKKVVFH 10 Unmodified _TKALKKVVFH_ 0 0 0 REV__MER41A_dup1973|chr14:89541213-89541765:+|1.3584951212073606|0.0049788227348849|8.09|151.0|8|2|sense REV__MER41A_dup1973|chr14:89541213-89541765:+|1.3584951212073606|0.0049788227348849|8.09|151.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 585.8727416992188 2 585.871508 1169.72846 NaN NaN NaN NaN NaN NaN NaN 28.087 1 31.718 31.218 32.218 3.6311 0 0 0 0.53105 1 3819 3819 0.45834 0.057624 1 + 43984 31303 27879 27891 50617 50617 0.1503884994474447 TKANFIFA 8 Unmodified _TKANFIFA_ 0 0 0 REV__L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|62|1|anti-sense REV__L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 456.2539367675781 2 456.252903 910.491253 NaN NaN NaN NaN NaN NaN NaN 80.804 1 80.804 80.304 81.304 0 0 0 0 0.40738 1 19053 19053 0.79363 0 1 + 43985 27871 27880 27892 50618 50618 0.03242703731382335 TKAQLLGGRG 10 Unmodified _TKAQLLGGRG_ 0 0 0 APOA5|p.V166Rfs*102|1|0.14|ENSG00000110243|chr11:116790734-116790735|-/C|frameshift_variant APOA5|p.V166Rfs*102|1|0.14|ENSG00000110243|chr11:116790734-116790735|-/C|frameshift_variant APOA5|p.V166Rfs*102|1|0.14|ENSG00000110243|chr11:116790734-116790735|-/C|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 500.7989807128906 2 500.79854 999.582528 0.31064 0.00015557 0.072804 3.646E-05 0.38344 0.00019203 500.7984798255156 88.902 0.42371 88.902 88.701 89.125 0 77 44 2 0 0 0 0.56543 1 21406 21406 0 0 1 294980 43986 402 27881 27893 50619 50619 0.08271967428731841 TKARGGRP 8 Unmodified _TKARGGRP_ 0 0 0 REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF MSMS UPN47_class_I_Rep_3 4 421.75140380859375 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 69.122 1 72.326 71.826 72.826 3.2044 0 0 0 0.40738 1 16837 16837 0.79363 0 1 + 43987 21709 27882 27894 50620 50620 0.06114873397245901 TKASSVIRY 9 Unmodified _TKASSVIRY_ 0 0 0 REV__L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|129|2|anti-sense REV__L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|129|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2940673828125 2 512.792924 1023.57129 0.25885 0.00013274 0.29108 0.00014926 0.54993 0.000282 512.7930335654762 42.807 0.2464 46.565 46.429 46.675 3.7579 31 22 2 0 0 0 0.41259 1 7937 7937 7.2892 0.56607 1 77061 + 43988 28983 27883 27895 50621 50621 0.0604514533456495 TKCKPRHDM 9 Unmodified _TKCKPRHDM_ 0 0 0 REV__L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|7|1|sense REV__L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 558.2767333984375 2 558.27606 1114.53757 NaN NaN NaN NaN NaN NaN NaN 34.908 1 38.172 37.672 38.672 3.2639 0 0 0 0.39518 1 6401 6401 1.8442 0 1 + 43989 24440 27884 27896 50622 50622 -0.015119227005016 TKDKPHKG 8 Unmodified _TKDKPHKG_ 0 0 0 REV__ENSG00000169905|ENST00000609928|TOR1AIP2 REV__ENSG00000169905|ENST00000609928|TOR1AIP2 MULTI-MSMS UPN47_class_I_Rep_2 3 455.7591857910156 2 455.758884 909.503215 -0.49453 -0.00022539 0.018087 8.2433E-06 -0.47644 -0.00021714 455.758745653657 27.226 0.87947 30.725 30.248 31.127 3.4986 111 75 2 0 0 0 0.82752 1 3937 3937 2.3027 0 1 120760 + 43990 20333 27885 27897 50623 50623 0.044843204745689036 TKDYKWPQNE 10 Unmodified _TKDYKWPQNE_ 0 0 0 REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 436.236328125 3 436.878815 1307.61462 0.15084 6.5899E-05 2.4416 0.0010667 2.5924 0.0011326 437.21459394051885 99.916 0.15213 103.71 103.63 103.79 3.7942 25 18 2 0 0 0 0.84575 1 24691 24691 0.77653 0.27058 1 56153 + 43991 30503 27886 27898 50624 50624 -0.026887096788186682 TKDYKWPQNE 10 Unmodified _TKDYKWPQNE_ 0 0 0 REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 436.878815 1307.61462 -0.14995 -6.5509E-05 2.6082 0.0011395 2.4582 0.0010739 437.2148749361507 99.865 0.09684 103.36 103.31 103.4 3.4974 -0.15747 -8.8153E-06 NaN 0.77653 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 111140 + 43992 30503 27886 27898 -0.026887096788186682 TKDYKWPQNE 10 Unmodified _TKDYKWPQNE_ 0 0 0 REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 436.878815 1307.61462 -0.3241 -0.00014159 2.6745 0.0011684 2.3504 0.0010268 436.879424168587 100.21 0.10978 103.66 103.62 103.73 3.4483 0.13777 7.8127E-05 NaN 0.77653 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 62679 + 43993 30503 27886 27898 -0.026887096788186682 TKDYKWPQNE 10 Unmodified _TKDYKWPQNE_ 0 0 0 REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense REV__L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|73|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 436.878815 1307.61462 0.14043 6.1351E-05 2.827 0.0012351 2.9675 0.0012964 437.2149894165902 99.465 0.10943 103.35 103.27 103.38 3.8839 -0.17085 0.00027804 NaN 0.77653 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 68336 + 43994 30503 27886 27898 -0.026887096788186682 TKEINRVLY 9 Unmodified _TKEINRVLY_ 0 0 0 nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1 nc|ENSG00000171100|Q13496-2|MTM1 nc|ENSG00000171100|Q13496-2|MTM1 MSMS UPN48_class_I_Rep_1 5 568.309814453125 2 568.327131 1134.63971 NaN NaN NaN NaN NaN NaN NaN 50.363 1 53.887 53.387 54.387 3.5246 0 0 0 0.38299 1 10277 10277 4.756 0 1 43995 4505 27887 27899 50625 50625 0.07777389914440391 TKEKEKRI 8 Unmodified _TKEKEKRI_ 0 0 0 L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|31|2|sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|31|2|sense L1MA5_dup2509|chr9:120634575-120635944:-|3.835649674691002|0.2027889574263563|4.24|151.0|31|2|sense MSMS UPN47_class_I_Rep_1 2 516.31396484375 2 516.314023 1030.61349 NaN NaN NaN NaN NaN NaN NaN 92.85 1 96.571 96.071 97.071 3.7209 0 0 0 0.40746 1 23119 23119 0.69038 0 1 43996 9890 27888 27900 50626 50626 0.09941120742928433 TKEKKEPI 8 Unmodified _TKEKKEPI_ 0 0 0 REV__nc|ENSG00000132950|Q9UJ78-5|ZMYM5 REV__nc|ENSG00000132950|Q9UJ78-5|ZMYM5 MSMS UPN47_class_I_Rep_1 2 486.7900390625 2 486.78985 971.565146 NaN NaN NaN NaN NaN NaN NaN 33.805 1 37.503 37.003 38.003 3.6983 0 0 0 0.40625 1 6000 6000 2.3027 0 1 + 43997 19040 27889 27901 50627 50627 0.07822627103041668 TKEKKEPI 8 Unmodified _TKEKKEPI_ 0 0 0 REV__nc|ENSG00000132950|Q9UJ78-5|ZMYM5 REV__nc|ENSG00000132950|Q9UJ78-5|ZMYM5 MULTI-MSMS UPN48_class_I_Rep_3 7 486.7904052734375 2 486.78985 971.565146 0.13829 6.7316E-05 0.98583 0.00047989 1.1241 0.00054721 486.7903251726145 34.706 0.29488 38.378 38.153 38.448 3.6721 47 34 2 0 0 0 0.82752 1 5504 5504 2.3027 0 1 95154 + 43998 19040 27889 27901 50628 50628 0.07822627103041668 TKENQLIH 8 Unmodified _TKENQLIH_ 0 0 0 L1MC4_dup10294|chr7:37246147-37246588:+|1.2822645469978862|0.0073593567058497|7.44|150.0|5|2|sense L1MC4_dup10294|chr7:37246147-37246588:+|1.2822645469978862|0.0073593567058497|7.44|150.0|5|2|sense L1MC4_dup10294|chr7:37246147-37246588:+|1.2822645469978862|0.0073593567058497|7.44|150.0|5|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 491.2900085449219 2 491.769448 981.524344 -0.27642 -0.00013593 0.033402 1.6426E-05 -0.24301 -0.00011951 491.769320993983 39.642 0.45806 42.88 42.593 43.051 3.238 47 31 2 0 0 0 0.72333 1 7776 7776 1.8442 0 1 63694 43999 11391 27890 27902 50629 50629 0.03284285783422547 TKEPKVID 8 Unmodified _TKEPKVID_ 0 0 0 REV__ENSG00000186439|ENST00000334268|TRDN REV__ENSG00000186439|ENST00000334268|TRDN MULTI-MSMS UPN46_class_I_Rep_3 1 465.2702941894531 2 465.26875 928.522947 0.22754 0.00010587 -0.14231 -6.6213E-05 0.085229 3.9654E-05 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.82752 1 25338 25338 2.5775 0 1 4396600 + 44000 20889 27891 27903 50630 50630 0.055826516946467564 TKEVNSGFFY 10 Unmodified _TKEVNSGFFY_ 0 0 0 nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B MULTI-MSMS UPN47_class_I_Rep_1 2 596.2877807617188 2 596.287671 1190.56079 0.24204 0.00014432 0.084867 5.0605E-05 0.3269 0.00019493 596.2876517077312 49.642 1.3655 53.301 52.923 54.288 3.6592 230 77 4 0 0 0 0.10298 6 10850 10726;10766;10809;10850;10889;10927 91.085 0 1 847880 44001 16684 27892 27904 50631;50632;50633;50634;50635;50636 50634 -0.026868821105153984 TKEVNSGFFY 10 Unmodified _TKEVNSGFFY_ 0 0 0 nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B MULTI-SECPEP UPN47_class_I_Rep_1 2 596.789306640625 2 596.287671 1190.56079 0.24204 0.00014432 0.084867 5.0605E-05 0.3269 0.00019493 596.2876517077312 49.642 1.3655 53.301 52.923 54.288 3.6592 230 77 4 0 0 0 0.84575 1 10927 10927 24.882 0 1 847880 44002 16684 27892 27904 50637 50637 -0.026868821105153984 TKEVNSGFFY 10 Unmodified _TKEVNSGFFY_ 0 0 0 nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B MULTI-MSMS UPN47_class_I_Rep_2 3 596.2876586914062 2 596.287671 1190.56079 0.43819 0.00026129 -0.11416 -6.8071E-05 0.32404 0.00019322 596.2875365708986 49.983 1.2683 53.326 52.92 54.188 3.3431 202 69 4 0 0 0 0.1198 7 10905 10863;10905;10945;10984;11027;11070;11118 85.764 0 1 771180 44003 16684 27892 27904 50638;50639;50640;50641;50642;50643;50644 50639 -0.026868821105153984 TKEVNSGFFY 10 Unmodified _TKEVNSGFFY_ 0 0 0 nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000132141|Q92526-3|CCT6B MULTI-MSMS UPN47_class_I_Rep_3 4 596.2877807617188 2 596.287671 1190.56079 0.49759 0.00029671 -0.18999 -0.00011329 0.3076 0.00018342 596.2875109175169 50.134 1.4467 53.36 52.897 54.344 3.2262 207 78 4 0 0 0 0.1249 8 11034 10951;10995;11034;11080;11126;11168;11209;11254 81.915 0 1 787460 44004 16684 27892 27904 50645;50646;50647;50648;50649;50650;50651;50652 50647 -0.026868821105153984 TKFHVPDYI 9 Unmodified _TKFHVPDYI_ 0 0 0 REV__ENST00000481435.5_1_3:169693473-169703658:+|nuORF REV__ENST00000481435.5_1_3:169693473-169703658:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.7968139648438 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.42249 1 16254 16254 6.7232 0.51738 1 271980 + 44005 17560 27893 27905 50653 50653 0.021500294773204587 TKFLMKCP 8 Unmodified _TKFLMKCP_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|8|1|sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 484.25823974609375 2 484.258816 966.50308 NaN NaN NaN NaN NaN NaN NaN 19.555 1 23.167 22.667 23.667 3.6118 0 0 0 0.40738 1 1819 1819 0.79363 0 1 + 44006 29226 27894 27906 50654 50654 0.018488611586917614 TKFTITTIIKS 11 Unmodified _TKFTITTIIKS_ 0 0 0 REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|77|2|sense REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|77|2|sense MSMS UPN47_class_I_Rep_1 2 626.8817749023438 2 626.879196 1251.74384 NaN NaN NaN NaN NaN NaN NaN 99.022 1 102.81 102.31 103.31 3.7926 0 0 0 0.38417 1 24499 24499 4.897 0 1 + 44007 24069 27895 27907 50655 50655 0.1280367195126928 TKGKKKKKK 9 Unmodified _TKGKKKKKK_ 0 0 0 REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|55|3|sense REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|55|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.3803100585938 2 537.3795 1072.74445 0.45864 0.00024646 0.035274 1.8955E-05 0.49391 0.00026542 537.3792472963254 108.87 0.43842 112.54 112.2 112.64 3.6746 54 40 2 0 0 0 0.5015 1 25753 25753 0.45834 0 1 5653100 + 44008 25166 27896 27908 50656 50656 0.2109855618164147 TKGNKLPLF 9 Unmodified _TKGNKLPLF_ 0 0 0 REV__nc|ENSG00000163357|Q5T197-2|DCST1 REV__nc|ENSG00000163357|Q5T197-2|DCST1 MSMS UPN48_class_I_Rep_2 6 509.78704833984375 2 509.30821 1016.60187 NaN NaN NaN NaN NaN NaN NaN 53.703 1 57.313 56.813 57.813 3.6098 0 0 0 0.38478 1 11281 11281 4.3292 1.44 1 + 44009 32035 27897 27909 50657 50657 0.09422923719603205 TKGRKDHKDG 10 Unmodified _TKGRKDHKDG_ 0 0 0 L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|8|1|sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|8|1|sense L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 571.7826538085938 2 571.307261 1140.59997 NaN NaN NaN NaN NaN NaN NaN 28.796 1 32.294 31.794 32.794 3.4986 0 0 0 0.53105 1 4519 4519 1.4819 0 1 44010 14359 27898 27910 50658 50658 0.035292629637069695 TKGTYFPA 8 Unmodified _TKGTYFPA_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS UPN46_class_I_Rep_3 1 442.7296142578125 2 442.729261 883.443968 0.16623 7.3595E-05 0.45486 0.00020138 0.62109 0.00027498 442.7292620198707 99.124 0.11969 99.124 99.063 99.182 0 20 14 2 0 0 0 0.82752 1 24143 24143 2.8892 0.58649 1 141850 44011 1063 27899 27911 50659 50659 -0.002415755396214081 TKGTYFPA 8 Unmodified _TKGTYFPA_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MSMS UPN46_class_I_Rep_3 1 442.7294616699219 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 98.987 1 98.987 98.487 99.487 0 0 0 0 0.40581 1 24105 24105 2.8892 0 1 44012 1063 27899 27911 50660 50660 -0.002415755396214081 TKGTYFPA 8 Unmodified _TKGTYFPA_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MULTI-MATCH UPN47_class_I_Rep_2 3 2 442.729261 883.443968 -0.063666 -2.8187E-05 -5.4444 -0.0024104 -5.5081 -0.0024386 442.72942249623907 95.336 0.048332 98.812 98.776 98.825 3.4753 -0.15614 -0.0050883 NaN 2.8892 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 18886 44013 1063 27899 27911 -0.002415755396214081 TKHKLTQRR 9 Unmodified _TKHKLTQRR_ 0 0 0 ENST00000569677.1_1_16:79246629-79246764:-|nuORF ENST00000569677.1_1_16:79246629-79246764:-|nuORF ENST00000569677.1_1_16:79246629-79246764:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 583.9961547851562 2 584.357088 1166.69962 0.52638 0.00030759 -1.3155 -0.00076874 -0.78916 -0.00046115 584.3559902586965 87.652 0.062828 87.652 87.637 87.7 0 8 5 3 0 0 0 0.12532 1 21016 21016 0.52476 0 1 120700 44014 7507 27900 27912 50661 50661 0.12294125368293862 TKHKVKLV 8 Unmodified _TKHKVKLV_ 0 0 0 REV__L1MC1_dup9576|chr12:9674758-9675191:-|1.8797172444107109|0.1244988022267307|3.92|151.0|15|3|sense REV__L1MC1_dup9576|chr12:9674758-9675191:-|1.8797172444107109|0.1244988022267307|3.92|151.0|15|3|sense MSMS UPN48_class_I_Rep_3 7 476.8175048828125 2 476.818744 951.622936 NaN NaN NaN NaN NaN NaN NaN 111.37 1 115.04 114.54 115.54 3.6654 0 0 0 0.40746 1 26431 26431 0.69038 0 1 + 44015 26625 27901 27913 50662 50662 0.14518933819124413 TKHRRKQK 8 Unmodified _TKHRRKQK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MSMS UPN46_class_I_Rep_3 1 541.3377075195312 2 541.338698 1080.66284 NaN NaN NaN NaN NaN NaN NaN 91.336 1 91.336 90.836 91.836 0 0 0 0 0.40753 1 22058 22058 0.6015 0 1 44016 5327 27902 27914 50663 50663 0.12573873542419278 TKIHKWSKL 9 Unmodified _TKIHKWSKL_ 0 0 0 REV__L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|1|1|sense REV__L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.848388671875 2 570.848033 1139.68151 0.48484 0.00027677 0.25798 0.00014727 0.74282 0.00042404 570.8480359409431 108.68 0.44345 112.32 112.17 112.62 3.6355 147 45 5 0 0 0 0.30034 1 26744 26744 13.906 0 1 156500000 + 44017 30380 27903 27915 50664 50664 0.11725990393620123 TKIKKKRQIR 10 Unmodified _TKIKKKRQIR_ 0 0 0 L1P2_dup1033|chrX:110238415-110241534:+|1.9989285354908304|0.0624600329596591|5.0|151.0|46|2|sense L1P2_dup1033|chrX:110238415-110241534:+|1.9989285354908304|0.0624600329596591|5.0|151.0|46|2|sense L1P2_dup1033|chrX:110238415-110241534:+|1.9989285354908304|0.0624600329596591|5.0|151.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 649.9423828125 2 649.940788 1297.86702 NaN NaN NaN NaN NaN NaN NaN 64.114 1 64.114 63.614 64.614 0 0 0 0 0.53105 1 14411 14411 0.40072 0 1 44018 13478 27904 27916 50665 50665 0.2300039291308167 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 594.9067993164062 2 594.905548 1187.79654 0.56474 0.00033597 0.60723 0.00036125 1.172 0.00069721 594.906103079875 108.56 0.30402 108.56 108.42 108.72 0 66 35 3 0 0 0 0.56493 1 26587 26587 0.35063 0 1 8268300 44019 8893 27905 27917 50666 50666 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 594.9055786132812 2 594.905548 1187.79654 0.51353 0.0003055 0.26747 0.00015912 0.78101 0.00046463 594.905577786719 108.25 0.68335 111.88 111.45 112.13 3.6355 156 57 4 0 0 0 0.56543 3 26495 26495;26534;26626 0 0 1 6639500 44020 8893 27905 27917 50667;50668;50669 50667 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 594.9058227539062 2 594.905548 1187.79654 0.50833 0.00030241 0.40617 0.00024163 0.9145 0.00054404 594.9057224641239 108.06 0.34669 111.6 111.35 111.7 3.5382 94 39 3 0 0 0 0.56493 2 26408 26370;26408 0.35063 0 1 7181900 44021 8893 27905 27917 50670;50671 50671 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 594.90576171875 2 594.905548 1187.79654 0.50834 0.00030242 0.31374 0.00018665 0.82209 0.00048906 594.9057438256569 108.22 0.31268 111.76 111.65 111.96 3.5382 55 32 3 0 0 0 0.56543 2 26451 26451;26500 0 0 1 8171100 44022 8893 27905 27917 50672;50673 50672 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 594.9057006835938 2 594.905548 1187.79654 0.41202 0.00024511 0.21217 0.00012622 0.62418 0.00037133 594.9056911067601 108.1 0.50781 111.73 111.42 111.93 3.6313 95 42 3 0 0 0 0.56543 2 26079 26079;26127 0 0 1 6291700 44023 8893 27905 27917 50674;50675 50674 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 594.9058837890625 2 594.905548 1187.79654 0.41192 0.00024505 0.16951 0.00010084 0.58143 0.00034589 594.9056848509993 108.22 0.1155 111.85 111.81 111.93 3.6313 12 7 2 0 0 0 0.56543 1 26180 26180 0 0 1 4567800 44024 8893 27905 27917 50676 50676 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 594.9056396484375 2 594.905548 1187.79654 0.48439 0.00028817 0.54472 0.00032405 1.0291 0.00061222 594.9060041384631 107.86 0.22508 111.54 111.37 111.59 3.6783 31 23 2 0 0 0 0.56543 1 25546 25546 0 0 1 5234200 44025 8893 27905 27917 50677 50677 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 594.9058227539062 2 594.905548 1187.79654 0.48451 0.00028824 0.3352 0.00019941 0.81971 0.00048765 594.9056442185835 108.26 0.46744 111.93 111.72 112.19 3.6746 148 54 3 0 0 0 0.56543 1 25620 25620 0 0 1 12548000 44026 8893 27905 27917 50678 50678 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 594.9058837890625 2 594.905548 1187.79654 0.52343 0.00031139 0.26059 0.00015503 0.78402 0.00046642 594.9056780951258 107.93 0.23781 111.62 111.42 111.66 3.6813 59 24 3 0 0 0 0.56543 1 25482 25482 0 0 1 7733000 44027 8893 27905 27917 50679 50679 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 594.9058837890625 2 594.905548 1187.79654 0.52353 0.00031145 0.33734 0.00020069 0.86088 0.00051214 594.9056198255491 108.16 0.3933 111.84 111.67 112.06 3.6813 84 41 4 0 0 0 0.56543 3 25520 25520;25565;25616 0 0 1 16759000 44028 8893 27905 27917 50680;50681;50682 50680 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 594.905548 1187.79654 0.56474 0.00033597 0.60723 0.00036125 1.172 0.00069721 594.906103079875 108.56 0.30402 108.56 108.42 108.72 0 0 0 NaN 0.35063 66 35 3 NaN NaN NaN NaN 0 NaN NaN 0 8268300 44029 8893 27905 27917 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 594.905548 1187.79654 0.51311 0.00030525 1.033 0.00061456 1.5461 0.00091981 594.9061878972909 107.9 0.13161 111.53 111.44 111.57 3.6355 -0.10071 0.00089902 NaN 0.35063 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3413500 44030 8893 27905 27917 0.21015674804766604 TKIKTKKKTL 10 Unmodified _TKIKTKKKTL_ 0 0 0 L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense L1M4_dup4642|chr4:77071266-77072253:+|2.1189614248708137|0.1171764911328542|4.18|151.0|18|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 594.905548 1187.79654 0.4846 0.00028829 -0.12768 -7.5958E-05 0.35692 0.00021233 594.9055980433767 108.02 0.11688 111.69 111.59 111.71 3.6746 0.060755 -0.00048201 NaN 0.35063 35 10 4 NaN NaN NaN NaN 0 NaN NaN 0 9024000 44031 8893 27905 27917 0.21015674804766604 TKIKTPPTF 9 Unmodified _TKIKTPPTF_ 0 0 0 REV__L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|23|2|sense REV__L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 516.8174438476562 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 73.203 1 76.767 76.267 77.267 3.5645 0 0 0 0.37476 1 17179 17179 6.7232 0 1 + 44032 28134 27906 27918 50683 50683 0.08699503999741864 TKILKQPRQ 9 Unmodified _TKILKQPRQ_ 0 0 0 L1MDa_dup5084|chr12:31287967-31289445:+|1.5851476735461285|0.1859579615169024|3.09|151.0|26|2|sense L1MDa_dup5084|chr12:31287967-31289445:+|1.5851476735461285|0.1859579615169024|3.09|151.0|26|2|sense L1MDa_dup5084|chr12:31287967-31289445:+|1.5851476735461285|0.1859579615169024|3.09|151.0|26|2|sense MSMS UPN46_class_I_Rep_3 1 556.3507080078125 2 556.35094 1110.68733 NaN NaN NaN NaN NaN NaN NaN 12.283 1 12.283 11.783 12.783 0 0 0 0 0.4007 1 71 71 0.52476 0 1 44033 12132 27907 27919 50684 50684 0.13641088905251308 TKILLMFI 8 Unmodified _TKILLMFI_ 0 0 0 REV__THE1B_dup18715|chr14:65085894-65086254:+|1.9992787275005703|0.1086773870723718|4.2|151.0|19|2|anti-sense REV__THE1B_dup18715|chr14:65085894-65086254:+|1.9992787275005703|0.1086773870723718|4.2|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_3 4 489.8053894042969 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 114.77 1 118.25 117.75 118.75 3.4802 0 0 0 0.40738 1 28198 28198 0.79363 0 1 + 44034 32200 27908 27920 50685 50685 0.10866537621382122 TKILNPLN 8 Unmodified _TKILNPLN_ 0 0 0 REV__L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|31|2|sense REV__L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|31|2|sense MSMS UPN47_class_I_Rep_2 3 456.7790832519531 2 456.779285 911.544017 NaN NaN NaN NaN NaN NaN NaN 41.5 1 44.866 44.366 45.366 3.3655 0 0 0 0.40625 1 8371 8371 2.3027 0 1 + 44035 28416 27909 27921 50686 50686 0.08470661794171974 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 414.8912353515625 3 414.891166 1241.65167 NaN NaN NaN NaN NaN NaN NaN 91.273 1 94.899 94.399 95.399 3.626 0 0 0 0.37476 1 21932 21932 4.1895 0 1 44036 8877 27910 27922 50687 50687 0.040510066576189274 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 414.890625 3 414.891166 1241.65167 0.08215 3.4083E-05 -0.086691 -3.5967E-05 -0.0045412 -1.8841E-06 414.8910870196158 91.326 0.14604 95.081 95.039 95.185 3.7554 34 22 2 0 0 0 0.36392 1 21741 21741 6.6304 1.5829 1 2468400 44037 8877 27910 27922 50688 50688 0.040510066576189274 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 414.8908386230469 3 414.891166 1241.65167 NaN NaN NaN NaN NaN NaN NaN 91.184 1 94.939 94.439 95.439 3.7554 0 0 0 0.31276 1 21710 21710 6.6304 1.5829 1 44038 8877 27910 27922 50689 50689 0.040510066576189274 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 414.89154052734375 3 414.891166 1241.65167 0.10723 4.4489E-05 0.026005 1.0789E-05 0.13323 5.5278E-05 414.8911477233162 91.305 0.1911 95.169 95.141 95.332 3.8634 37 28 2 0 0 0 0.42249 1 21660 21660 4.1895 0 1 2860400 44039 8877 27910 27922 50690 50690 0.040510066576189274 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 414.891166 1241.65167 0.07842 3.2536E-05 -0.058253 -2.4169E-05 0.020167 8.3672E-06 414.89117135645114 95.393 0.060921 95.393 95.375 95.436 0 0.2067 -0.00014127 NaN 6.6304 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 891380 44040 8877 27910 27922 0.040510066576189274 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 414.891166 1241.65167 -0.42622 -0.00017683 0.41767 0.00017329 -0.008551 -3.5477E-06 414.89129019830455 91.642 0.063118 95.103 95.076 95.139 3.4613 -0.083477 0.0004511 NaN 6.6304 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 627610 44041 8877 27910 27922 0.040510066576189274 TKIRNERYY 9 Unmodified _TKIRNERYY_ 0 0 0 L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense L1M4_dup18626|chr18:21586515-21587627:-|1.011264615351425|0.0319653024562303|4.98|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 414.891166 1241.65167 0.10723 4.4489E-05 0.026005 1.0789E-05 0.13323 5.5278E-05 414.8911477233162 91.305 0.1911 95.169 95.141 95.332 3.8634 -0.01791 -3.6395E-05 NaN 6.6304 37 28 2 NaN NaN NaN NaN 0 NaN NaN 0 2860400 44042 8877 27910 27922 0.040510066576189274 TKIRQRYY 8 Unmodified _TKIRQRYY_ 0 0 0 L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|40|3|sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|40|3|sense L1M5_dup4678|chr2:28059806-28061303:+|1.7721408733260855|0.0340103887804755|5.7|151.0|40|3|sense MSMS UPN48_class_I_Rep_2 6 564.3191528320312 2 564.31964 1126.62473 NaN NaN NaN NaN NaN NaN NaN 56.83 1 60.363 59.863 60.863 3.5333 0 0 0 0.40738 1 12237 12237 0.79363 0 1 44043 9181 27911 27923 50691 50691 0.06647942837071241 TKITKSKT 8 Unmodified _TKITKSKT_ 0 0 0 REV__L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|90|3|sense REV__L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|90|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 453.78411865234375 2 453.784567 905.554582 -0.08071 -3.6625E-05 -4.4491 -0.0020189 -4.5298 -0.0020556 453.7846691525714 51.023 0.37152 54.361 54.214 54.586 3.3386 31 19 2 0 0 0 0.82752 1 11265 11265 0.6015 0 1 70452 + 44044 30709 27912 27924 50692 50692 0.09802644448609499 TKKDKIVKVSK 11 Unmodified _TKKDKIVKVSK_ 0 0 0 REV__L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|13|2|sense REV__L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 637.397216796875 2 637.413737 1272.81292 NaN NaN NaN NaN NaN NaN NaN 108.04 1 111.68 111.18 112.18 3.6313 0 0 0 0.35862 1 26102 26102 8.4443 1.7211 1 + 44045 26970 27913 27925 50693 50693 0.18742755970833969 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.3870849609375 2 626.387188 1250.75982 0.55634 0.00034849 0.62655 0.00039246 1.1829 0.00074095 626.8887469438961 103.74 0.65985 107.5 107.09 107.75 3.7627 160 99 2 0 0 0 0.56033 4 25432 25413;25432;25462;25489 3.5965 0 1 63557000 + 44046 27601 27914 27926 50694;50695;50696;50697 50695 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.8895263671875 2 626.387188 1250.75982 0.55641 0.00034853 0.85494 0.00053553 1.4114 0.00088406 626.8894015822715 106.34 0.099709 110.05 110.02 110.12 3.7088 17 13 2 0 0 0 0.56333 2 26081 26081;26088 1.4819 0 1 200460 + 44047 27601 27914 27926 50698;50699 50698 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.386962890625 2 626.387188 1250.75982 0.51235 0.00032093 0.5736 0.00035929 1.0859 0.00068022 626.387689476984 104.86 1.0662 108.39 108.21 109.28 3.5308 261 167 2 0 0 0 0.56033 5 25656 25656;25695;25721;25746;25796 3.5965 0 1 42067000 + 44048 27601 27914 27926 50700;50701;50702;50703;50704 50700 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.8900756835938 2 626.387188 1250.75982 0.51239 0.00032096 1.4767 0.00092499 1.9891 0.0012459 626.3882247531333 106.11 0.25341 109.65 109.62 109.87 3.5367 46 36 2 0 0 0 0.56333 2 25960 25960;25968 1.4819 0 1 291910 + 44049 27601 27914 27926 50705;50706 50705 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3896484375 2 626.387188 1250.75982 0.42787 0.00026801 1.088 0.00068152 1.5159 0.00094953 626.8890218634626 104.39 0.41526 108.02 107.94 108.36 3.6247 88 59 2 0 0 0 0.56033 1 25161 25161 3.5965 0 1 63602000 + 44050 27601 27914 27926 50707 50707 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3860473632812 2 626.387188 1250.75982 0.42779 0.00026796 0.06491 4.0659E-05 0.4927 0.00030862 626.3871281359764 105.15 0.33216 108.77 108.69 109.02 3.6247 67 46 2 0 0 0 0.56033 1 25350 25350 3.5965 0 1 4571900 + 44051 27601 27914 27926 50708 50708 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 626.3890991210938 2 626.387188 1250.75982 NaN NaN NaN NaN NaN NaN NaN 105.6 1 109.3 108.8 109.8 3.702 0 0 0 0.53105 1 24919 24919 1.4819 0 1 + 44052 27601 27914 27926 50709 50709 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 626.3878784179688 2 626.387188 1250.75982 0.59994 0.0003758 0.04766 2.9853E-05 0.6476 0.00040565 626.3874924506532 104.25 0.27109 107.97 107.93 108.2 3.7192 73 39 2 0 0 0 0.84575 1 24600 24600 3.5965 0 1 49877000 + 44053 27601 27914 27926 50710 50710 0.14447378188174298 TKKELTKYLK 10 Unmodified _TKKELTKYLK_ 0 0 0 REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense REV__L1ME1_dup1336|chr1:114412356-114413127:-|1.3873582986917674|0.1128745031401813|3.62|151.0|9|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 626.387188 1250.75982 0.49469 0.00030987 0.18067 0.00011317 0.67536 0.00042304 626.3874726530964 104.5 0.21999 108.2 108.17 108.39 3.6991 -0.21295 -8.8343E-05 NaN 3.5965 56 30 2 NaN NaN NaN NaN 0 NaN NaN 0 27476000 + 44054 27601 27914 27926 0.14447378188174298 TKKGSKTT 8 Unmodified _TKKGSKTT_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 425.7527160644531 2 425.753267 849.491981 0.10843 4.6167E-05 -1.3106 -0.00055797 -1.2021 -0.00051181 425.75267201638485 82.912 0.19173 82.912 82.83 83.022 0 17 16 2 0 0 0 0.82752 1 19659 19659 0 0 1 110640 + 44055 27251 27915 27927 50711 50711 0.061214983804006806 TKKGSKTT 8 Unmodified _TKKGSKTT_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 425.753267 849.491981 0.10843 4.6167E-05 -1.3106 -0.00055797 -1.2021 -0.00051181 425.75267201638485 82.912 0.19173 82.912 82.83 83.022 0 -0.035571 0.00011697 NaN 0 17 16 2 NaN NaN NaN NaN 0 NaN NaN 0 110640 + 44056 27251 27915 27927 0.061214983804006806 TKKGSKTT 8 Unmodified _TKKGSKTT_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 425.753267 849.491981 0.030093 1.2812E-05 -1.4595 -0.00062137 -1.4294 -0.00060856 425.7525582435826 79.446 0.54924 82.911 82.561 83.111 3.465 -0.036787 -9.8257E-06 NaN 0 77 49 2 NaN NaN NaN NaN 0 NaN NaN 0 422540 + 44057 27251 27915 27927 0.061214983804006806 TKKGSKTT 8 Unmodified _TKKGSKTT_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 425.753267 849.491981 -0.074926 -3.19E-05 -0.1193 -5.0792E-05 -0.19422 -8.2692E-05 425.75315716639614 79.589 0.06189 83.138 83.108 83.17 3.5487 0.19055 0.0011313 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48947 + 44058 27251 27915 27927 0.061214983804006806 TKKGSKTT 8 Unmodified _TKKGSKTT_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|21|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 425.753267 849.491981 0.077458 3.2978E-05 -1.4929 -0.00063561 -1.4155 -0.00060263 425.75252779419696 79.196 0.55995 82.829 82.436 82.996 3.6331 -0.11819 -3.8311E-05 NaN 0 118 63 2 NaN NaN NaN NaN 0 NaN NaN 0 343100 + 44059 27251 27915 27927 0.061214983804006806 TKKHRRDLF 9 Unmodified _TKKHRRDLF_ 0 0 0 ENST00000376544.7_1_9:82187160-82187238:+|nuORF ENST00000376544.7_1_9:82187160-82187238:+|nuORF ENST00000376544.7_1_9:82187160-82187238:+|nuORF MSMS UPN46_class_I_Rep_3 1 600.8527221679688 2 600.851638 1199.68872 NaN NaN NaN NaN NaN NaN NaN 51.183 1 51.183 50.683 51.683 0 0 0 0 0.39518 1 10862 10862 1.8442 0 1 44060 6451 27916 27928 50712 50712 0.09686722994001684 TKKHRRLKY 9 Unmodified _TKKHRRLKY_ 0 0 0 REV__L1MC4a_dup103|chr1:35974925-35975522:-|1.754605702252267|0.0835055817339041|4.39|150.0|10|2|sense REV__L1MC4a_dup103|chr1:35974925-35975522:-|1.754605702252267|0.0835055817339041|4.39|150.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 615.3953857421875 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 100.81 1 104.42 103.92 104.92 3.6084 0 0 0 0.4007 1 24342 24342 0.52476 0 1 + 44061 26968 27917 27929 50713 50713 0.14643288782053787 TKKHYIFF 8 Unmodified _TKKHYIFF_ 0 0 0 REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|60|2|sense REV__HERV17-int_dup221|chr3:142438293-142442703:+|1.91500916672693|0.0585791535978599|5.03|151.0|60|2|sense MSMS UPN47_class_I_Rep_2 3 542.303955078125 2 542.302927 1082.5913 NaN NaN NaN NaN NaN NaN NaN 34.567 1 37.993 37.493 38.493 3.4253 0 0 0 0.40604 1 6269 6269 2.5775 0 1 + 44062 23547 27918 27930 50714 50714 0.053309410651763756 TKKKKKAKK 9 Unmodified _TKKKKKAKK_ 0 0 0 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 MSMS UPN46_class_I_Rep_3 1 544.3856811523438 2 544.387326 1086.7601 NaN NaN NaN NaN NaN NaN NaN 59.859 1 59.859 59.359 60.359 0 0 0 0 0.4029 1 13254 13254 0 0 1 44063 3782 27919 27931 50715 50715 0.22018842698685148 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.3794555664062 2 537.3795 1072.74445 0.35296 0.00018967 -0.10245 -5.5052E-05 0.25052 0.00013462 537.3793103256636 108.64 0.21504 108.64 108.47 108.68 0 40 24 3 0 0 0 0.50582 1 26570 26570 0 0 1 6041200 44064 12341 27920 27932 50716 50716 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.3794555664062 2 537.3795 1072.74445 0.35241 0.00018938 -0.24849 -0.00013354 0.10392 5.5843E-05 537.3793088084833 109.01 0.51173 109.01 108.92 109.43 0 54 35 2 0 0 0 0.50582 2 26732 26732;26795 0 0 1 6816700 44065 12341 27920 27932 50717;50718 50717 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MSMS UPN46_class_I_Rep_3 1 537.3790893554688 2 537.3795 1072.74445 NaN NaN NaN NaN NaN NaN NaN 109.65 1 109.65 109.15 110.15 0 0 0 0 0.4029 1 26952 26952 0 0 1 44066 12341 27920 27932 50719 50719 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 537.3792724609375 2 537.3795 1072.74445 0.50495 0.00027135 -0.19536 -0.00010498 0.30959 0.00016637 537.3792874593722 107.97 0.18426 111.61 111.57 111.76 3.6355 18 12 2 0 0 0 0.50582 1 26490 26490 0 0 1 6181900 44067 12341 27920 27932 50720 50720 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 537.3795776367188 2 537.3795 1072.74445 0.48202 0.00025903 0.17977 9.6602E-05 0.66178 0.00035563 537.3794801231016 108.25 0.4906 111.79 111.46 111.95 3.5382 75 54 3 0 0 0 0.5015 1 26486 26486 0.45834 0 1 28318000 44068 12341 27920 27932 50721 50721 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.3795776367188 2 537.3795 1072.74445 0.35209 0.00018921 0.10611 5.7022E-05 0.45821 0.00024623 537.3794049441506 108.11 0.41711 111.74 111.51 111.93 3.6313 90 35 4 0 0 0 0.5015 1 26150 26150 0.45834 0 1 11668000 44069 12341 27920 27932 50722 50722 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 537.3792114257812 2 537.3795 1072.74445 NaN NaN NaN NaN NaN NaN NaN 108.19 1 111.82 111.32 112.32 3.6313 0 0 0 0.4029 1 26160 26160 0 0 1 44070 12341 27920 27932 50723 50723 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MSMS UPN48_class_I_Rep_2 6 537.380126953125 2 537.3795 1072.74445 NaN NaN NaN NaN NaN NaN NaN 107.87 1 111.55 111.05 112.05 3.6783 0 0 0 0.4029 1 25534 25534 0 0 1 44071 12341 27920 27932 50724 50724 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.3795776367188 2 537.3795 1072.74445 0.57135 0.00030703 0.087757 4.7159E-05 0.65911 0.00035419 537.3793977353689 108.23 0.18996 111.92 111.87 112.06 3.6813 62 23 3 0 0 0 0.5015 1 25594 25594 0.45834 0 1 42311000 44072 12341 27920 27932 50725 50725 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 537.8128662109375 2 537.3795 1072.74445 0.57106 0.00030687 -0.096092 -5.1638E-05 0.47497 0.00025524 537.3790997081393 109.04 0.32291 112.72 112.62 112.94 3.6751 52 40 3 0 0 0 0.12551 1 25878 25878 0 0 1 2135500 44073 12341 27920 27932 50726 50726 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 537.3795 1072.74445 0.3511 0.00018868 0.16102 8.6531E-05 0.51213 0.00027521 537.3793369757732 109.52 0.13386 113.15 113.12 113.26 3.6321 0.21042 0.00032441 NaN 0 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 390270 44074 12341 27920 27932 0.2109855618164147 TKKKKKKKG 9 Unmodified _TKKKKKKKG_ 0 0 0 L1ME1_dup26290|chr15:99859628-99861621:+|1.3748325590129364|0.1226120513095446|3.49|151.0|85|3|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense REV__L1MC4_dup20078|chr15:49821905-49823169:-|1.9233273599109293|0.0069485928739154|8.11|150.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 537.3795 1072.74445 0.45854 0.00024641 -0.3026 -0.00016261 0.15594 8.3801E-05 537.3791484030496 109.28 0.30353 112.95 112.89 113.19 3.6715 0.010397 -0.00017387 NaN 0 50 38 2 NaN NaN NaN NaN 0 NaN NaN 0 1515200 44075 12341 27920 27932 0.2109855618164147 TKKKKKKTK 9 Unmodified _TKKKKKKTK_ 0 0 0 REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.3929443359375 2 559.392608 1116.77066 0.51367 0.00028734 -0.088026 -4.9241E-05 0.42564 0.0002381 559.3924765078294 108.27 0.28226 111.9 111.87 112.15 3.6355 52 27 2 0 0 0 0.5015 1 26648 26648 0.45834 0 1 7555400 + 44076 17243 27921 27933 50727 50727 0.21694825353119995 TKKKKKKTK 9 Unmodified _TKKKKKKTK_ 0 0 0 REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.3927612304688 2 559.392608 1116.77066 0.6349 0.00035516 -0.055094 -3.0819E-05 0.57981 0.00032434 559.3924949659253 108.43 0.11378 111.96 111.92 112.04 3.5333 26 10 3 0 0 0 0.5015 1 26300 26300 0.45834 0 1 5334600 + 44077 17243 27921 27933 50728 50728 0.21694825353119995 TKKKKKKTK 9 Unmodified _TKKKKKKTK_ 0 0 0 REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 559.392608 1116.77066 0.6349 0.00035516 -0.055094 -3.0819E-05 0.57981 0.00032434 559.3924949659253 108.43 0.11378 111.96 111.92 112.04 3.5333 0.0093423 -9.7141E-05 NaN 0.45834 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5334600 + 44078 17243 27921 27933 0.21694825353119995 TKKKKKKTK 9 Unmodified _TKKKKKKTK_ 0 0 0 REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense REV__AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|9|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 559.392608 1116.77066 0.45808 0.00025625 0.16556 9.2616E-05 0.62365 0.00034886 559.3925994128962 108.41 0.18231 112.04 111.95 112.13 3.6313 0.093302 0.00014973 NaN 0.45834 40 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4666200 + 44079 17243 27921 27933 0.21694825353119995 TKKKKKKVKNQ 11 Unmodified _TKKKKKKVKNQ_ 0 0 0 REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|102|3|sense REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|102|3|sense MSMS UPN46_class_I_Rep_3 1 453.3055725097656 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 112.07 1 112.07 111.57 112.57 0 0 0 0 0.38417 1 27660 27660 0.094841 0 1 + 44080 25277 27922 27934 50729 50729 0.22873242364698854 TKKKKKKVKNQ 11 Unmodified _TKKKKKKVKNQ_ 0 0 0 REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|102|3|sense REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|102|3|sense MSMS UPN48_class_I_Rep_2 6 453.30511474609375 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 113.61 1 117.28 116.78 117.78 3.663 0 0 0 0.38417 1 27121 27121 0.094841 0 1 + 44081 25277 27922 27934 50730 50730 0.22873242364698854 TKKKKKKVKNQ 11 Unmodified _TKKKKKKVKNQ_ 0 0 0 REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|102|3|sense REV__L1MA4A_dup331|chr1:174527506-174530767:-|2.877466579767176|0.0334199729152782|6.43|151.0|102|3|sense MSMS UPN48_class_I_Rep_2 6 453.3051452636719 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 115.66 1 119.32 118.82 119.82 3.6607 0 0 0 0.38417 1 27691 27691 0.094841 0 1 + 44082 25277 27922 27934 50731 50731 0.22873242364698854 TKKKKTKTKI 10 Unmodified _TKKKKTKTKI_ 0 0 0 AluJb_dup7254|chr1:145195168-145195439:-|1.5951453222964191|0.0373767710359498|5.42|150.0|9|3|sense AluJb_dup7254|chr1:145195168-145195439:-|1.5951453222964191|0.0373767710359498|5.42|150.0|9|3|sense AluJb_dup7254|chr1:145195168-145195439:-|1.5951453222964191|0.0373767710359498|5.42|150.0|9|3|sense MSMS UPN46_class_I_Rep_3 1 602.7275390625 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 115.39 1 115.39 114.89 115.89 0 0 0 0 0.53105 1 28538 28538 0 0 1 44083 61 27923 27935 50732 50732 0.21415077179040054 TKKKKTKTKI 10 Unmodified _TKKKKTKTKI_ 0 0 0 AluJb_dup7254|chr1:145195168-145195439:-|1.5951453222964191|0.0373767710359498|5.42|150.0|9|3|sense AluJb_dup7254|chr1:145195168-145195439:-|1.5951453222964191|0.0373767710359498|5.42|150.0|9|3|sense AluJb_dup7254|chr1:145195168-145195439:-|1.5951453222964191|0.0373767710359498|5.42|150.0|9|3|sense MSMS UPN47_class_I_Rep_2 3 602.4111328125 2 602.410998 1202.80744 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.82 114.32 115.32 3.5226 0 0 0 0.53105 1 27086 27086 0 0 1 44084 61 27923 27935 50733 50733 0.21415077179040054 TKKKLIAT 8 Unmodified _TKKKLIAT_ 0 0 0 REV__ENST00000597828.5_1_3:181417563-181457401:+|nuORF REV__ENST00000597828.5_1_3:181417563-181457401:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 452.2691955566406 2 451.805303 901.596052 0.18994 8.5817E-05 0.44825 0.00020252 0.6382 0.00028834 451.80472715990413 109.33 0.078728 109.33 109.31 109.38 0 11 8 2 0 0 0 0.72333 1 26848 26848 0 0 1 558580 + 44085 23200 27924 27936 50734 50734 0.14131825207948623 TKKKSKKIIA 10 Unmodified _TKKKSKKIIA_ 0 0 0 REV__L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|14|1|sense REV__L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|14|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 572.8928833007812 2 572.892441 1143.77033 0.48435 0.00027748 0.29571 0.00016941 0.78006 0.00044689 572.8926306030348 108.58 0.26783 108.58 108.44 108.71 0 81 31 4 0 0 0 0.84575 1 26603 26603 0 0 1 7010600 + 44086 29360 27925 27937 50735 50735 0.2041940563328808 TKKKSKKIIA 10 Unmodified _TKKKSKKIIA_ 0 0 0 REV__L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|14|1|sense REV__L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|14|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 572.8928833007812 2 572.892441 1143.77033 0.48337 0.00027692 0.99366 0.00056926 1.477 0.00084618 572.8929263124306 108.8 0.17552 108.8 108.7 108.88 0 24 16 2 0 0 0 0.84575 1 26603 26603 0 0 1 6130100 + 44087 29360 27925 27937 50736 50736 0.2041940563328808 TKKKSKKIIA 10 Unmodified _TKKKSKKIIA_ 0 0 0 REV__L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|14|1|sense REV__L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.8927001953125 2 572.892441 1143.77033 0.48339 0.00027693 0.0075608 4.3315E-06 0.49095 0.00028126 572.8923692134458 108.25 0.70424 111.89 111.44 112.14 3.6355 182 59 4 0 0 0 0.56543 1 26623 26623 0 0 1 8632700 + 44088 29360 27925 27937 50737 50737 0.2041940563328808 TKKLERVYK 9 Unmodified _TKKLERVYK_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS UPN47_class_I_Rep_2 3 582.8592529296875 2 582.858598 1163.70264 0.63483 0.00037002 0.86634 0.00050496 1.5012 0.00087498 582.8589758745198 108.47 0.10577 112.01 111.93 112.04 3.5333 20 9 3 0 0 0 0.48846 1 26320 26320 1.8442 0 1 3485400 + 44089 18829 27926 27938 50738 50738 0.12733955702469757 TKKLERVYK 9 Unmodified _TKKLERVYK_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS UPN48_class_I_Rep_1 5 582.8592529296875 2 582.858598 1163.70264 0.40597 0.00023662 1.086 0.00063296 1.4919 0.00086958 582.8590434453563 108.45 0.12151 112.08 112 112.12 3.6313 24 8 4 0 0 0 0.46869 1 26241 26241 3.9444 2.1002 1 5334600 + 44090 18829 27926 27938 50739 50739 0.12733955702469757 TKKLERVYK 9 Unmodified _TKKLERVYK_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS UPN48_class_I_Rep_2 6 583.3607788085938 2 582.858598 1163.70264 0.48063 0.00028014 1.0275 0.0005989 1.5082 0.00087904 582.8590067446981 108.43 0.094315 112.11 112.04 112.14 3.6746 23 9 3 0 0 0 0.48846 1 25720 25720 1.8442 0 1 4806300 + 44091 18829 27926 27938 50740 50740 0.12733955702469757 TKKLERVYK 9 Unmodified _TKKLERVYK_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS UPN48_class_I_Rep_3 7 582.8593139648438 2 582.858598 1163.70264 0.49409 0.00028799 1.3462 0.00078465 1.8403 0.0010726 582.8591317064046 108.43 0.095474 112.11 112.05 112.15 3.6751 17 6 3 0 0 0 0.46869 1 25668 25668 3.9444 0.66309 1 4409600 + 44092 18829 27926 27938 50741 50741 0.12733955702469757 TKKLKNNN 8 Unmodified _TKKLKNNN_ 0 0 0 MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|43|2|anti-sense MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|43|2|anti-sense MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 480.24444580078125 2 480.285266 958.555979 NaN NaN NaN NaN NaN NaN NaN 25.72 1 29.482 28.982 29.982 3.7624 0 0 0 0.40746 1 3573 3573 0.69038 0 1 44093 16152 27927 27939 50742 50742 0.07504278537362552 TKKLRSPY 8 Unmodified _TKKLRSPY_ 0 0 0 ENST00000514040.1_1_5:94040842-94114865:-|nuORF;nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;ENSG00000175471|ENST00000515393|MCTP1 ENST00000514040.1_1_5:94040842-94114865:-|nuORF ENST00000514040.1_1_5:94040842-94114865:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2956848144531 2 496.798009 991.581465 0.12319 6.1198E-05 -1.7402 -0.00086452 -1.617 -0.00080333 496.7972291234836 33.492 0.054157 33.492 33.445 33.499 0 5 3 2 0 0 0 0.72333 1 5864 5864 0.79363 0 1 116130 44094 4726 27928 27940 50743 50743 0.0853375305979398 TKKRAPNS 8 Unmodified _TKKRAPNS_ 0 0 0 L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 451.1618347167969 2 451.264333 900.514114 NaN NaN NaN NaN NaN NaN NaN 44.651 1 48.288 47.788 48.788 3.6372 0 0 0 0.40625 1 8459 8459 2.3027 0 1 44095 14030 27929 27941 50744 50744 0.05987722848840349 TKKRQKQKY 9 Unmodified _TKKRQKQKY_ 0 0 0 REV__L1PA3_dup2050|chr3:121452691-121458395:+|1.1305944953027305|0.0686075763777257|4.04|151.0|142|3|sense REV__L1PA3_dup2050|chr3:121452691-121458395:+|1.1305944953027305|0.0686075763777257|4.04|151.0|142|3|sense MSMS UPN46_class_I_Rep_3 1 604.3681640625 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 107.27 1 107.27 106.77 107.77 0 0 0 0 0.4007 1 26164 26164 0.52476 0 1 + 44096 29517 27930 27942 50745 50745 0.12459876308275852 TKKSSLIPLPQ 11 Unmodified _TKKSSLIPLPQ_ 0 0 0 REV__nc|ENSG00000060718|P12107-4|COL11A1 REV__nc|ENSG00000060718|P12107-4|COL11A1 MULTI-MSMS UPN47_class_I_Rep_1 2 404.5832214355469 3 404.583451 1210.72852 -0.11885 -4.8086E-05 -0.48092 -0.00019457 -0.59977 -0.00024266 404.58320255395677 51.812 0.39499 55.405 55.292 55.687 3.5932 29 24 2 0 0 0 0.67519 1 11504 11504 0.32927 0.32927 1 91265 + 44097 17724 27931 27943 50746 50746 0.13158805154080255 TKLARRAG 8 Unmodified _TKLARRAG_ 0 0 0 AluJb_dup114353|chr19:7477821-7478039:+|1.2411167367909557|0.2087729029883913|2.57|151.0|4|2|sense AluJb_dup114353|chr19:7477821-7478039:+|1.2411167367909557|0.2087729029883913|2.57|151.0|4|2|sense AluJb_dup114353|chr19:7477821-7478039:+|1.2411167367909557|0.2087729029883913|2.57|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 436.7748107910156 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 81.995 1 85.664 85.164 86.164 3.669 0 0 0 0.40746 1 19472 19472 0.69038 0 1 44098 22 27932 27944 50747 50747 0.09427732948370249 TKLHLDLLTL 10 Unmodified _TKLHLDLLTL_ 0 0 0 REV__ENSG00000197706|ENST00000343399|OR6C74 REV__ENSG00000197706|ENST00000343399|OR6C74 MSMS UPN46_class_I_Rep_3 1 583.8590698242188 2 583.860806 1165.70706 NaN NaN NaN NaN NaN NaN NaN 93.542 1 93.542 93.042 94.042 0 0 0 0 0.53105 1 22672 22672 1.4819 0.15237 1 + 44099 21094 27933 27945 50748 50748 0.13083420125371958 TKLHLKKK 8 Unmodified _TKLHLKKK_ 0 0 0 AluSq2_dup1691|chr1:44471542-44471850:+|3.2857413549423944|0.0104360483470581|8.3|149.0|6|2|sense AluSq2_dup1691|chr1:44471542-44471850:+|3.2857413549423944|0.0104360483470581|8.3|149.0|6|2|sense AluSq2_dup1691|chr1:44471542-44471850:+|3.2857413549423944|0.0104360483470581|8.3|149.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 498.33990478515625 2 498.339844 994.665135 0.29152 0.00014527 0.23809 0.00011865 0.5296 0.00026392 498.3398405986416 108.28 0.53719 111.92 111.63 112.16 3.6355 173 50 4 0 0 0 0.82752 1 26622 26622 2.3027 0 1 12836000 44100 248 27934 27946 50749 50749 0.16758909227507957 TKLIKERDK 9 Unmodified _TKLIKERDK_ 0 0 0 REV__L1MA4_dup6779|chr10:58253764-58254712:-|1.7673049604374944|0.0109204520891748|7.34|151.0|18|2|sense REV__L1MA4_dup6779|chr10:58253764-58254712:-|1.7673049604374944|0.0109204520891748|7.34|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 565.80908203125 2 565.84823 1129.68191 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.09 115.59 116.59 3.6648 0 0 0 0.40098 1 26782 26782 0.45834 0 1 + 44101 25198 27935 27947 50750 50750 0.12225365322774451 TKLKPVLIYH 10 Unmodified _TKLKPVLIYH_ 0 0 0 Tigger1_dup7090|chr9:111379232-111381519:-|2.941696568390799|0.3859729467732223|2.93|151.0|66|3|sense Tigger1_dup7090|chr9:111379232-111381519:-|2.941696568390799|0.3859729467732223|2.93|151.0|66|3|sense Tigger1_dup7090|chr9:111379232-111381519:-|2.941696568390799|0.3859729467732223|2.93|151.0|66|3|sense MSMS UPN48_class_I_Rep_3 7 404.5885925292969 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 37.976 1 41.635 41.135 42.135 3.6595 0 0 0 0.53105 1 6467 6467 0.77653 0.078866 1 44102 33170 27936 27948 50751 50751 0.14683716741956232 TKLKSGVPL 9 Unmodified _TKLKSGVPL_ 0 0 0 REV__MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|28|1|anti-sense REV__MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79473876953125 2 471.80276 941.590967 NaN NaN NaN NaN NaN NaN NaN 30.569 1 34.051 33.551 34.551 3.4821 0 0 0 0.38639 1 5057 5057 3.9444 0 1 + 44103 31279 27937 27949 50752 50752 0.11783521345330428 TKLLHNQG 8 Unmodified _TKLLHNQG_ 0 0 0 REV__L1MEd_dup3089|chr2:157410055-157411221:-|5.407389359386583|0.2677596059986193|4.34|151.0|47|1|anti-sense REV__L1MEd_dup3089|chr2:157410055-157411221:-|5.407389359386583|0.2677596059986193|4.34|151.0|47|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 455.75872802734375 2 455.758884 909.503215 -0.84738 -0.0003862 0.3904 0.00017793 -0.45698 -0.00020827 455.758880614132 27.535 0.77388 30.878 30.398 31.172 3.3422 113 66 2 0 0 0 0.82752 1 4063 4063 2.3027 0 1 102260 + 44104 28568 27938 27950 50753 50753 0.044843204745689036 TKLLKTKTKK 10 Unmodified _TKLLKTKTKK_ 0 0 0 L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|13|1|sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|13|1|sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 594.9059448242188 2 594.905548 1187.79654 0.4846 0.00028829 -0.12768 -7.5958E-05 0.35692 0.00021233 594.9055980433767 108.02 0.11688 111.69 111.59 111.71 3.6746 35 10 4 0 0 0 0.56543 1 25581 25581 0 0 1 9024000 44105 11950 27939 27951 50754 50754 0.2101567480472113 TKLLRHRV 8 Unmodified _TKLLRHRV_ 0 0 0 LTR2_dup77|chr1:247132557-247133013:+|1.630919204443825|0.0757030879199882|4.43|151.0|31|3|anti-sense LTR2_dup77|chr1:247132557-247133013:+|1.630919204443825|0.0757030879199882|4.43|151.0|31|3|anti-sense LTR2_dup77|chr1:247132557-247133013:+|1.630919204443825|0.0757030879199882|4.43|151.0|31|3|anti-sense MSMS UPN46_class_I_Rep_3 1 511.8327941894531 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 35.958 1 35.958 35.458 36.458 0 0 0 0 0.40746 1 6609 6609 0.69038 0 1 44106 15599 27940 27952 50755 50755 0.14092256799222014 TKLLSMEYT 9 Unmodified _TKLLSMEYT_ 0 0 0 REV__L1PA16_dup4510|chr5:69847907-69851762:-|2.000573077205181|0.0328031911367444|5.93|150.0|207|2|anti-sense REV__L1PA16_dup4510|chr5:69847907-69851762:-|2.000573077205181|0.0328031911367444|5.93|150.0|207|2|anti-sense MSMS UPN47_class_I_Rep_3 4 543.2810668945312 2 543.281 1084.54745 NaN NaN NaN NaN NaN NaN NaN 28.162 1 31.495 30.995 31.995 3.3337 0 0 0 0.39518 1 4378 4378 1.8442 0 1 + 44107 29380 27941 27953 50756 50756 0.00855543785860391 TKLRKKKK 8 Unmodified _TKLRKKKK_ 0 0 0 REV__AluSx1_dup36640|chr6:42941169-42941480:-|1.6484560956672103|0.2531488548406122|2.7|151.0|3|1|sense REV__AluSx1_dup36640|chr6:42941169-42941480:-|1.6484560956672103|0.2531488548406122|2.7|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.3665161132812 2 515.366393 1028.71823 0.3386 0.0001745 0.13613 7.0158E-05 0.47474 0.00024466 515.3663485512549 108.24 0.47931 111.92 111.67 112.15 3.6813 103 47 4 0 0 0 0.82752 1 25580 25580 2.0598 0 1 47804000 + 44108 17177 27942 27954 50757 50757 0.20502287010162945 TKLRVRLLFLV 11 Unmodified _TKLRVRLLFLV_ 0 0 0 PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|25|1|anti-sense;PABL_A_dup262|chrX:16726001-16726611:-|1.4126643314383491|0.0120584578382328|6.87|151.0|27|1|anti-sense PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|25|1|anti-sense PABL_A_dup91|chr2:233154419-233154989:-|2.3865018005507577|0.0514891541546725|5.53|151.0|25|1|anti-sense MSMS UPN47_class_I_Rep_3 4 453.3053894042969 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.15 1 120.59 120.09 121.09 3.4425 0 0 0 0.38417 1 28849 28849 0.094841 0 1 44109 16876 27943 27955 50758 50758 0.23275331858394566 TKLSQDYFVL 10 Unmodified _TKLSQDYFVL_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MSMS UPN47_class_I_Rep_3 4 405.22198486328125 3 405.22029 1212.63904 NaN NaN NaN NaN NaN NaN NaN 48.863 1 52.097 51.597 52.597 3.2345 0 0 0 0.53105 1 10661 10661 3.5871 0.26742 1 44110 4958 27944 27956 50759 50759 0.04122550474698983 TKLTKLKKR 9 Unmodified _TKLTKLKKR_ 0 0 0 L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN47_class_I_Rep_2 3 558.3845825195312 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.27 1 116.79 116.29 117.29 3.5171 0 0 0 0.4007 1 27545 27545 0.52476 0 1 44111 12835 27945 27957 50760 50760 0.20222538836060266 TKLTKLKKR 9 Unmodified _TKLTKLKKR_ 0 0 0 L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 558.7731323242188 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 110.81 1 114.48 113.98 114.98 3.669 0 0 0 0.4007 1 26362 26362 0.52476 0 1 44112 12835 27945 27957 50761 50761 0.20222538836060266 TKLTLWYIG 9 Unmodified _TKLTLWYIG_ 0 0 0 REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF MSMS UPN47_class_I_Rep_1 2 547.7374877929688 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 21.195 1 24.839 24.339 25.339 3.6436 0 0 0 0.40038 1 2262 2262 0.6015 0 1 + 44113 22013 27946 27958 50762 50762 0.07411790516789551 TKLTLWYIG 9 Unmodified _TKLTLWYIG_ 0 0 0 REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF MSMS UPN48_class_I_Rep_1 5 547.8102416992188 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 20.035 1 23.573 23.073 24.073 3.5378 0 0 0 0.40038 1 1623 1623 0.6015 0 1 + 44114 22013 27946 27958 50763 50763 0.07411790516789551 TKMKKKKK 8 Unmodified _TKMKKKKK_ 0 0 0 REV__AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense REV__AluSx1_dup93384|chr16:74313664-74313975:-|1.3870749823770083|0.3399280294166465|2.03|151.0|12|3|sense MSMS UPN47_class_I_Rep_1 2 510.7867736816406 2 510.341529 1018.66851 NaN NaN NaN NaN NaN NaN NaN 81.024 1 84.511 84.011 85.011 3.4874 0 0 0 0.40738 1 20204 20204 0.79363 0 1 + 44115 17189 27947 27959 50764 50764 0.15991836009857252 TKMKLLLN 8 Unmodified _TKMKLLLN_ 0 0 0 MER90a_dup429|chr6:36126625-36127205:+|1.4916607771962858|0.3467551282015176|2.1|151.0|9|2|sense MER90a_dup429|chr6:36126625-36127205:+|1.4916607771962858|0.3467551282015176|2.1|151.0|9|2|sense MER90a_dup429|chr6:36126625-36127205:+|1.4916607771962858|0.3467551282015176|2.1|151.0|9|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 480.8015441894531 2 480.799163 959.583773 0.23649 0.0001137 3.8316 0.0018423 4.0681 0.001956 480.80128776783306 111.58 0.069038 115.25 115.24 115.31 3.6666 5 4 2 0 0 0 0.72333 1 26554 26554 2.3027 0 1 51976 44116 16229 27948 27960 50765 50765 0.1023646547325825 TKMLERKKRSF 11 Unmodified _TKMLERKKRSF_ 0 0 0 REV__ENST00000591293.2_1_19:1067404-1080295:+|nuORF REV__ENST00000591293.2_1_19:1067404-1080295:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 475.2785339355469 3 475.278256 1422.81294 0.29879 0.00014201 -0.15201 -7.2247E-05 0.14678 6.976E-05 475.2781156233415 59.524 1.9757 63.01 62.024 64 3.4868 251 143 2 0 0 0 0.68024 1 13230 13230 0.50596 0.50596 1 584480 + 44117 20705 27949 27961 50766 50766 0.11844432699172103 TKPDERKK 8 Unmodified _TKPDERKK_ 0 0 0 REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 501.2907409667969 2 501.290548 1000.56654 0.29022 0.00014549 0.19098 9.5735E-05 0.4812 0.00024122 501.2904979421608 78.494 0.70551 78.494 78.399 79.104 0 153 71 3 0 0 0 0.82752 1 18452 18452 7.9102 0 1 419270 + 44118 21182 27950 27962 50767 50767 0.06628261191804086 TKPDERKK 8 Unmodified _TKPDERKK_ 0 0 0 REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 501.290548 1000.56654 0.19334 9.6918E-05 0.25022 0.00012543 0.44356 0.00022235 501.2905329536935 75.373 0.88775 78.777 78.395 79.282 3.4034 0.064791 -1.2499E-05 NaN 7.9102 104 79 2 NaN NaN NaN NaN 0 NaN NaN 0 156380 + 44119 21182 27950 27962 0.06628261191804086 TKPDERKK 8 Unmodified _TKPDERKK_ 0 0 0 REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 501.290548 1000.56654 0.22558 0.00011308 0.37715 0.00018906 0.60272 0.00030214 501.2905698911152 75.453 1.1739 78.766 78.232 79.406 3.3127 0.053616 0.00011475 NaN 7.9102 147 115 2 NaN NaN NaN NaN 0 NaN NaN 0 154030 + 44120 21182 27950 27962 0.06628261191804086 TKPDERKK 8 Unmodified _TKPDERKK_ 0 0 0 REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 501.290548 1000.56654 0.25127 0.00012596 0.2938 0.00014728 0.54507 0.00027324 501.2905160856964 75.476 0.69948 78.723 78.393 79.092 3.2464 0.010781 3.1189E-05 NaN 7.9102 114 63 2 NaN NaN NaN NaN 0 NaN NaN 0 184430 + 44121 21182 27950 27962 0.06628261191804086 TKPDERKK 8 Unmodified _TKPDERKK_ 0 0 0 REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF REV__ENST00000374602.2_1_1:23735155-23745710:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 501.290548 1000.56654 0.2872 0.00014397 0.19866 9.9586E-05 0.48586 0.00024356 501.290515563249 75.211 0.23673 78.801 78.701 78.938 3.59 0.089062 -6.4197E-05 NaN 7.9102 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 198550 + 44122 21182 27950 27962 0.06628261191804086 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7398986816406 2 482.740357 963.46616 0.27441 0.00013247 -0.042429 -2.0482E-05 0.23198 0.00011199 482.7401081597104 103.94 0.52664 103.94 103.63 104.15 0 107 49 3 0 0 0 0.82752 1 25312 25312 2.5775 0.27475 1 1199700 + 44123 27345 27951 27963 50768 50768 -0.017033958618526412 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.7398681640625 2 482.740357 963.46616 0.39515 0.00019075 -0.64847 -0.00031304 -0.25332 -0.00012229 482.7398427241818 99.799 0.25992 103.3 103.09 103.35 3.4974 90 35 3 0 0 0 0.82752 1 24392 24392 2.5775 0.27475 1 809410 + 44124 27345 27951 27963 50769 50769 -0.017033958618526412 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 482.73980712890625 2 482.740357 963.46616 0.12493 6.031E-05 -0.45055 -0.0002175 -0.32562 -0.00015719 482.7400035897456 99.765 0.39389 103.37 103.01 103.4 3.6065 92 53 2 0 0 0 0.82752 1 24032 24032 2.5775 0 1 880460 + 44125 27345 27951 27963 50770 50770 -0.017033958618526412 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 482.7400817871094 2 482.740357 963.46616 0.12517 6.0423E-05 -0.28985 -0.00013992 -0.16469 -7.9501E-05 482.74008738295754 99.832 0.39049 103.44 103.34 103.73 3.6065 103 46 3 0 0 0 0.82752 1 24093 24093 2.5775 0 1 865600 + 44126 27345 27951 27963 50771 50771 -0.017033958618526412 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 482.7401123046875 2 482.740357 963.46616 0.24187 0.00011676 -0.45344 -0.0002189 -0.21158 -0.00010214 482.7400070270819 99.616 0.37646 103.37 103.28 103.65 3.7575 119 47 3 0 0 0 0.82752 2 23651 23651;23688 2.5775 0.27475 1 1168800 + 44127 27345 27951 27963 50772;50773 50772 -0.017033958618526412 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 482.740357 963.46616 0.17453 8.4251E-05 -1.0041 -0.00048471 -0.82956 -0.00040046 482.73989758728476 99.626 0.04554 103.07 103.05 103.09 3.4483 -0.17426 -0.00040512 NaN 2.5775 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 59522 + 44128 27345 27951 27963 -0.017033958618526412 TKPDNNYL 8 Unmodified _TKPDNNYL_ 0 0 0 REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense REV__L1MD1_dup425|chr1:247320079-247320732:+|1.4602178594054498|0.1839265060983996|2.99|151.0|19|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 482.740357 963.46616 0.22644 0.00010931 -0.61566 -0.0002972 -0.38922 -0.00018789 482.73994577949907 99.768 0.21028 103.62 103.58 103.79 3.8537 -0.15816 -0.00037933 NaN 2.5775 51 29 2 NaN NaN NaN NaN 0 NaN NaN 0 505960 + 44129 27345 27951 27963 -0.017033958618526412 TKPDVSKVGK 10 Unmodified _TKPDVSKVGK_ 0 0 0 REV__nc|ENSG00000176974|P34896-4|SHMT1 REV__nc|ENSG00000176974|P34896-4|SHMT1 MULTI-MSMS UPN48_class_I_Rep_2 6 530.3167114257812 2 529.813856 1057.61316 0.39579 0.0002097 0.46647 0.00024714 0.86226 0.00045684 530.3156624375691 35.714 0.13715 39.402 39.294 39.431 3.6877 16 11 2 0 0 0 0.56374 1 5907 5907 1.1933 0.50296 1 127050 + 44130 20604 27952 27964 50774 50774 0.08665701023096517 TKPDVSKVGK 10 Unmodified _TKPDVSKVGK_ 0 0 0 REV__nc|ENSG00000176974|P34896-4|SHMT1 REV__nc|ENSG00000176974|P34896-4|SHMT1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 529.813856 1057.61316 0.36038 0.00019094 0.94334 0.0004998 1.3037 0.00069073 530.3160887588602 35.984 0.053932 39.494 39.472 39.526 3.5101 0.046054 0.00030644 NaN 1.1933 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 50861 + 44131 20604 27952 27964 0.08665701023096517 TKPETFNQ 8 Unmodified _TKPETFNQ_ 0 0 0 nc|ENSG00000036549|Q8IYH5-3|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 MULTI-MSMS UPN46_class_I_Rep_3 1 482.7401428222656 2 482.740357 963.46616 0.27441 0.00013247 -0.042429 -2.0482E-05 0.23198 0.00011199 482.7401081597104 103.94 0.52664 103.94 103.63 104.15 0 107 49 3 0 0 0 0.82752 2 25353 25353;25360 2.5775 0 1 1199700 44132 850 27953 27965 50775;50776 50775 -0.017033958618526412 TKPETFNQ 8 Unmodified _TKPETFNQ_ 0 0 0 nc|ENSG00000036549|Q8IYH5-3|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 nc|ENSG00000036549|Q8IYH5-3|ZZZ3 MULTI-MSMS UPN46_class_I_Rep_3 1 482.7402038574219 2 482.740357 963.46616 0.27428 0.00013241 -0.48259 -0.00023297 -0.20831 -0.00010056 482.74001801993916 104.16 0.28984 104.16 104.07 104.36 0 61 32 3 0 0 0 0.82752 1 25445 25445 2.5775 0 1 871760 44133 850 27953 27965 50777 50777 -0.017033958618526412 TKPGRRQIP 9 Unmodified _TKPGRRQIP_ 0 0 0 L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|43|2|sense L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|43|2|sense L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 526.82177734375 2 526.819807 1051.62506 NaN NaN NaN NaN NaN NaN NaN 33.864 1 33.864 33.364 34.364 0 0 0 0 0.37476 1 5976 5976 6.7232 0 1 44134 14711 27954 27966 50778 50778 0.10131362556944623 TKPILMLRR 9 Unmodified _TKPILMLRR_ 0 0 0 REV__THE1A-int_dup242|chr3:15549419-15550990:+|1.1904278863906472|0.0398520818577046|4.9|151.0|17|2|sense REV__THE1A-int_dup242|chr3:15549419-15550990:+|1.1904278863906472|0.0398520818577046|4.9|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 564.3583984375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 79.261 1 82.796 82.296 83.296 3.5352 0 0 0 0.39518 1 18915 18915 1.8442 0.19162 1 + 44135 32212 27955 27967 50779 50779 0.14258623412865745 TKPINPRRQ 9 Unmodified _TKPINPRRQ_ 0 0 0 REV__L1PA8A_dup161|chr1:247136961-247137361:+|1.887725815523294|0.0698716960733912|4.76|151.0|11|3|sense REV__L1PA8A_dup161|chr1:247136961-247137361:+|1.887725815523294|0.0698716960733912|4.76|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 554.9950561523438 2 555.330539 1108.64652 NaN NaN NaN NaN NaN NaN NaN 101.49 1 105.1 104.6 105.6 3.612 0 0 0 0.38639 1 24498 24498 3.9444 0 1 + 44136 30258 27956 27968 50780 50780 0.09654747585636869 TKPKATQGKS 10 Unmodified _TKPKATQGKS_ 0 0 0 MER49_dup1232|chr19:11926165-11926396:-|1.5751018427953851|0.1289998021211333|3.61|151.0|3|1|sense MER49_dup1232|chr19:11926165-11926396:-|1.5751018427953851|0.1289998021211333|3.61|151.0|3|1|sense MER49_dup1232|chr19:11926165-11926396:-|1.5751018427953851|0.1289998021211333|3.61|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3037109375 2 523.303655 1044.59276 0.32134 0.00016816 -0.10503 -5.4963E-05 0.21631 0.0001132 523.3035186531973 82.762 0.22032 82.762 82.72 82.941 0 45 18 3 0 0 0 0.53794 1 19655 19655 7.1017 0.89594 1 2283400 44137 16009 27957 27969 50781 50781 0.07224530363282611 TKPKATQGKS 10 Unmodified _TKPKATQGKS_ 0 0 0 MER49_dup1232|chr19:11926165-11926396:-|1.5751018427953851|0.1289998021211333|3.61|151.0|3|1|sense MER49_dup1232|chr19:11926165-11926396:-|1.5751018427953851|0.1289998021211333|3.61|151.0|3|1|sense MER49_dup1232|chr19:11926165-11926396:-|1.5751018427953851|0.1289998021211333|3.61|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.3034057617188 2 523.303655 1044.59276 0.3781 0.00019786 -0.18651 -9.7604E-05 0.19158 0.00010026 523.3033786877409 77.221 1.2339 80.832 80.389 81.623 3.6116 174 121 2 0 0 0 0.56189 1 18276 18276 2.4985 2.4985 1 126020 44138 16009 27957 27969 50782 50782 0.07224530363282611 TKPKFGRQ 8 Unmodified _TKPKFGRQ_ 0 0 0 REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF MSMS UPN46_class_I_Rep_3 1 481.283447265625 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 98.774 1 98.774 98.274 99.274 0 0 0 0 0.4044 1 24051 24051 4.756 0 1 + 44139 17632 27958 27970 50783 50783 0.06864599745563282 TKPLAPLLAE 10 Unmodified _TKPLAPLLAE_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MULTI-MSMS UPN47_class_I_Rep_1 2 526.82177734375 2 526.82115 1051.62775 0.44531 0.0002346 0.96253 0.00050708 1.4078 0.00074168 526.821556157442 110.47 0.20586 114.06 113.94 114.14 3.5835 38 26 2 0 0 0 0.56118 1 27240 27240 2.9952 0.93549 1 432130 + 44140 20185 27959 27971 50784 50784 0.10399773171229754 TKPLAPLLAE 10 Unmodified _TKPLAPLLAE_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MULTI-MSMS UPN47_class_I_Rep_1 2 526.822265625 2 526.82115 1051.62775 0.44632 0.00023513 1.07 0.00056372 1.5163 0.00079885 527.3231803048009 110.73 0.1694 114.31 114.27 114.44 3.5835 37 19 3 0 0 0 0.56118 1 27298 27298 2.9952 0.93549 1 672160 + 44141 20185 27959 27971 50785 50785 0.10399773171229754 TKPLAPLLAE 10 Unmodified _TKPLAPLLAE_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MULTI-MATCH UPN46_class_I_Rep_3 1 2 526.82115 1051.62775 0.33294 0.0001754 1.4274 0.00075199 1.7603 0.00092739 526.8218247532091 113.73 0.033707 113.73 113.72 113.75 0 -0.15515 0.00038403 NaN 2.9952 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 125370 + 44142 20185 27959 27971 0.10399773171229754 TKPLAPLLAE 10 Unmodified _TKPLAPLLAE_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MULTI-MATCH UPN47_class_I_Rep_3 4 2 526.82115 1051.62775 0.41962 0.00022107 0.88091 0.00046408 1.3005 0.00068515 526.8215627143703 110.46 0.092987 113.99 113.93 114.02 3.529 0.10341 -0.00019178 NaN 2.9952 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 72569 + 44143 20185 27959 27971 0.10399773171229754 TKPLAPLLAE 10 Unmodified _TKPLAPLLAE_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.82115 1051.62775 0.30082 0.00015848 1.0787 0.00056827 1.3795 0.00072675 526.8217465416453 110.13 0.25925 113.77 113.69 113.95 3.6326 -0.11965 1.6605E-05 NaN 2.9952 49 38 2 NaN NaN NaN NaN 0 NaN NaN 0 625460 + 44144 20185 27959 27971 0.10399773171229754 TKPLHIDLFK 10 Unmodified _TKPLHIDLFK_ 0 0 0 REV__L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|161|3|sense REV__L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|161|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 606.3607788085938 2 606.360973 1210.70739 0.6065 0.00036776 0.68226 0.00041369 1.2888 0.00078145 606.3610303999629 110.2 0.18513 110.2 110.11 110.3 0 42 15 3 0 0 0 0.56118 1 27115 27115 2.9952 1.151 1 2325700 + 44145 29993 27960 27972 50786 50786 0.11046839845221257 TKPLKKSREY 10 Unmodified _TKPLKKSREY_ 0 0 0 REV__ENSG00000009413.16,REV3L,chr6,-,I24.1,111335611,111343924|30|6.09|4|intron REV__ENSG00000009413.16,REV3L,chr6,-,I24.1,111335611,111343924|30|6.09|4|intron MULTI-MSMS UPN47_class_I_Rep_2 3 625.867431640625 2 625.366787 1248.71902 0.63458 0.00039685 0.11563 7.2312E-05 0.75022 0.00046916 625.8682338548139 98.751 0.19805 102.24 102.12 102.32 3.4897 42 28 2 0 0 0 0.54822 1 24207 24207 5.7319 0.83484 1 426150 + 44146 17562 27961 27973 50787 50787 0.10461036868582596 TKPLPSTV 8 Unmodified _TKPLPSTV_ 0 0 0 HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|32|3|sense HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|32|3|sense HUERS-P3b-int_dup94|chr3:172666974-172668316:+|1.0281484051180505|0.0126535672416923|6.34|151.0|32|3|sense MSMS UPN48_class_I_Rep_2 6 421.75128173828125 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 68.814 1 72.322 71.822 72.822 3.5083 0 0 0 0.40604 1 15896 15896 2.5775 0 1 44147 8462 27962 27974 50788 50788 0.06383284011519663 TKPPRNKG 8 Unmodified _TKPPRNKG_ 0 0 0 L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|57|3|sense;L1PA7_dup6130|chr7:92919235-92925360:-|1.6490962508557858|0.0145038610291375|6.83|150.0|20|1|sense;L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|52|2|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|16|1|sense;L1P3_dup2054|chrX:72437038-72440594:+|3.796873473798668|0.0583670315805057|6.02|151.0|63|2|sense;L1PA8A_dup159|chr1:247133014-247133650:+|2.9996834771490954|0.1771141060326569|4.08|151.0|23|3|sense L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|57|3|sense L1PA7_dup9609|chr11:14800474-14802605:-|3.946798257001024|0.0847707517503868|5.54|151.0|57|3|sense MSMS UPN48_class_I_Rep_3 7 449.2665710449219 2 449.266876 896.519199 NaN NaN NaN NaN NaN NaN NaN 81.182 1 84.867 84.367 85.367 3.685 0 0 0 0.40625 1 19216 19216 2.3027 0 1 44148 13532 27963 27975 50789 50789 0.06680026711467235 TKPPVKKKK 9 Unmodified _TKPPVKKKK_ 0 0 0 REV__nc|ENSG00000165626|Q8N7W2-2|BEND7 REV__nc|ENSG00000165626|Q8N7W2-2|BEND7 MULTI-SECPEP UPN48_class_I_Rep_3 7 526.8219604492188 2 527.360776 1052.707 0.46227 0.00024378 -0.13098 -6.9072E-05 0.33129 0.00017471 527.3605623933224 108.81 0.14235 112.49 112.37 112.51 3.6751 23 15 2 0 0 0 0.12354 1 25769 25769 1.4819 0 1 3702300 + 44149 20127 27964 27976 50790 50790 0.1827546491601879 TKPQASRPV 9 Unmodified _TKPQASRPV_ 0 0 0 THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|68|2|anti-sense THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|68|2|anti-sense THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|68|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 492.2852783203125 2 492.285266 982.555979 0.30068 0.00014802 0.12359 6.0842E-05 0.42427 0.00020886 492.28524274105934 88.958 0.59859 88.958 88.635 89.234 0 121 64 3 0 0 0 0.43982 1 21371 21371 5.7319 5.7319 1 497550 44150 32873 27965 27977 50791 50791 0.06400278537364557 TKPQIQRA 8 Unmodified _TKPQIQRA_ 0 0 0 L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|50|3|sense L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|50|3|sense L1MCa_dup5543|chr12:54958346-54959830:-|3.9238043628293138|0.2817017550031573|3.8|151.0|50|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 471.280029296875 2 471.279983 940.545414 0.20692 9.7518E-05 -0.098497 -4.6419E-05 0.10842 5.1098E-05 471.2798424119405 83.408 0.82825 87.089 86.718 87.546 3.6814 127 94 2 0 0 0 0.82752 1 19770 19770 4.756 0 1 219320 44151 11828 27966 27978 50792 50792 0.0727629588294576 TKPQTARK 8 Unmodified _TKPQTARK_ 0 0 0 REV__L1M4b_dup2930|chr10:92856164-92857783:-|1.3220745464953787|0.0140057569030768|6.56|149.0|23|1|sense REV__L1M4b_dup2930|chr10:92856164-92857783:-|1.3220745464953787|0.0140057569030768|6.56|149.0|23|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.27972412109375 2 465.279983 928.545414 0.21977 0.00010226 -0.31082 -0.00014462 -0.091051 -4.2364E-05 465.27973330162007 83.26 0.75526 83.26 83.141 83.897 0 104 76 3 0 0 0 0.82752 1 19797 19797 2.3027 0 1 363750 + 44152 24539 27967 27979 50793 50793 0.07828295882927705 TKPQVIIQY 9 Unmodified _TKPQVIIQY_ 0 0 0 REV__nc|ENSG00000100150|O75140-6|DEPDC5 REV__nc|ENSG00000100150|O75140-6|DEPDC5 MSMS UPN48_class_I_Rep_2 6 545.316650390625 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 82.711 1 86.38 85.88 86.88 3.669 0 0 0 0.37692 1 19649 19649 6.2058 0.44535 1 + 44153 18091 27968 27980 50794 50794 0.08222889028479585 TKPRKEKT 8 Unmodified _TKPRKEKT_ 0 0 0 ENSG00000137440|ENST00000382333|FGFBP1 ENSG00000137440|ENST00000382333|FGFBP1 ENSG00000137440|ENST00000382333|FGFBP1 MULTI-MSMS UPN46_class_I_Rep_3 1 494.3010559082031 2 494.300916 986.587279 0.30522 0.00015087 -0.080454 -3.9768E-05 0.22477 0.0001111 494.300858877837 92.366 0.14584 92.366 92.329 92.474 0 25 16 2 0 0 0 0.82752 1 22353 22353 2.3027 0 1 764050 44154 3024 27969 27981 50795 50795 0.09344851571461277 TKPRKGIHR 9 Unmodified _TKPRKGIHR_ 0 0 0 HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.8401489257812 2 546.841074 1091.66759 0.48674 0.00026617 -0.56361 -0.00030821 -0.076867 -4.2034E-05 546.8402030080658 92.353 0.30282 96.116 96.045 96.347 3.7629 63 44 2 0 0 0 0.48846 1 21977 21977 1.8442 1.8442 1 152900 44155 7894 27970 27982 50796 50796 0.12542757685150718 TKPRKGIHR 9 Unmodified _TKPRKGIHR_ 0 0 0 HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|37|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 546.841074 1091.66759 0.38799 0.00021217 -1.0407 -0.0005691 -0.65271 -0.00035693 546.8403341858344 95.827 0.23592 95.827 95.791 96.027 0 -0.14442 -5.5941E-05 NaN 1.8442 75 29 4 NaN NaN NaN NaN 0 NaN NaN 0 1477200 44156 7894 27970 27982 0.12542757685150718 TKPRLPVVIIK 11 Unmodified _TKPRLPVVIIK_ 0 0 0 REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 632.429443359375 2 632.42919 1262.84383 0.71637 0.00045305 0.44222 0.00027967 1.1586 0.00073273 632.429249312217 107.58 0.12126 107.58 107.49 107.61 0 27 15 3 0 0 0 0.61292 1 26248 26248 4.897 3.5675 1 20980000 + 44157 28421 27971 27983 50797 50797 0.2229195407574025 TKPRLPVVIIK 11 Unmodified _TKPRLPVVIIK_ 0 0 0 REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 632.4284057617188 2 632.42919 1262.84383 0.7158 0.00045269 -0.017855 -1.1292E-05 0.69794 0.0004414 632.4286980903953 107.67 0.5601 107.67 107.62 108.18 0 65 57 2 0 0 0 0.65821 1 26277 26277 2.4985 1.169 1 25890000 + 44158 28421 27971 27983 50798 50798 0.2229195407574025 TKPRLPVVIIK 11 Unmodified _TKPRLPVVIIK_ 0 0 0 REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 632.4300537109375 2 632.42919 1262.84383 0.7158 0.00045269 -0.017855 -1.1292E-05 0.69794 0.0004414 632.4286980903953 107.67 0.5601 107.67 107.62 108.18 0 65 57 2 0 0 0 22.551 1 26300 26300 4.897 3.5675 1 25890000 + 44159 28421 27971 27983 50799 50799 0.2229195407574025 TKPRLPVVIIK 11 Unmodified _TKPRLPVVIIK_ 0 0 0 REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 632.42919 1262.84383 0.71637 0.00045305 0.44222 0.00027967 1.1586 0.00073273 632.429249312217 107.58 0.12126 107.58 107.49 107.61 0 0 0 NaN 4.897 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 20980000 + 44160 28421 27971 27983 0.2229195407574025 TKPRLPVVIIK 11 Unmodified _TKPRLPVVIIK_ 0 0 0 REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 632.42919 1262.84383 0.49676 0.00031417 -0.90184 -0.00057035 -0.40507 -0.00025618 632.4283049230718 104.22 0.13281 107.91 107.89 108.03 3.6991 0.066586 -0.00094818 NaN 2.4985 44 17 3 NaN NaN NaN NaN 0 NaN NaN 0 17197000 + 44161 28421 27971 27983 0.2229195407574025 TKPRLPVVIIK 11 Unmodified _TKPRLPVVIIK_ 0 0 0 REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense REV__L1MEc_dup18261|chr22:40064003-40064613:-|1.103564604554502|0.0112106649279305|6.62|151.0|12|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 632.42919 1262.84383 0.61457 0.00038867 0.8914 0.00056375 1.506 0.00095242 632.4290398181017 104.25 0.072006 107.96 107.95 108.02 3.7192 0.11656 0.00132 NaN 2.4985 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 10237000 + 44162 28421 27971 27983 0.2229195407574025 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.3299560546875 2 567.330539 1132.64652 0.46053 0.00026127 -1.1795 -0.00066917 -0.71897 -0.00040789 567.3296614006246 84.684 0.24915 84.684 84.553 84.802 0 59 23 3 0 0 0 0.49026 1 20166 20166 1.6526 0.45928 1 312440 + 44163 21338 27972 27984 50800 50800 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.329833984375 2 567.330539 1132.64652 0.46223 0.00026224 -1.0538 -0.00059787 -0.59161 -0.00033564 567.3298358174645 85.425 0.17174 85.425 85.281 85.452 0 26 15 2 0 0 0 0.47197 1 20359 20359 3.5965 0.8613 1 392900 + 44164 21338 27972 27984 50801 50801 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.3304443359375 2 567.330539 1132.64652 0.46293 0.00026264 -0.90616 -0.00051409 -0.44322 -0.00025145 567.3299593359214 88.13 0.16048 88.13 88.06 88.22 0 23 12 2 0 0 0 0.42249 2 21170 21135;21170 6.7232 2.7788 1 966100 + 44165 21338 27972 27984 50802;50803 50803 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.330322265625 2 567.330539 1132.64652 0.4631 0.00026273 -0.9608 -0.00054509 -0.4977 -0.00028236 567.3298230425725 88.616 0.24247 88.616 88.566 88.808 0 44 28 2 0 0 0 0.49026 1 21323 21323 1.6526 0.32309 1 242550 + 44166 21338 27972 27984 50804 50804 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 567.3301391601562 2 567.330539 1132.64652 0.46309 0.00026272 -1.5253 -0.00086537 -1.0623 -0.00060265 567.3293831752866 89.527 0.13549 89.527 89.459 89.595 0 16 13 2 0 0 0 0.47197 1 21530 21530 3.5965 1.2938 1 107420 + 44167 21338 27972 27984 50805 50805 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 567.3302001953125 2 567.330539 1132.64652 0.41842 0.00023738 -0.70549 -0.00040025 -0.28707 -0.00016286 567.3300186543671 81.645 0.89778 85.158 84.718 85.615 3.5122 160 100 2 0 0 0 0.47197 1 20440 20440 3.5965 1.7523 1 224520 + 44168 21338 27972 27984 50806 50806 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 567.3309936523438 2 567.330539 1132.64652 0.51519 0.00029228 -0.44339 -0.00025155 0.071804 4.0737E-05 567.3301540525977 81.431 0.59148 84.815 84.564 85.155 3.3839 108 67 2 0 0 0 0.47197 1 20360 20360 3.5965 3.5965 1 138870 + 44169 21338 27972 27984 50807 50807 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 567.3303833007812 2 567.330539 1132.64652 0.47367 0.00026873 -0.14877 -8.4399E-05 0.32491 0.00018433 567.3302785217568 81.63 0.88196 84.953 84.65 85.532 3.3231 129 97 2 0 0 0 0.47197 2 20454 20454;20492 3.5965 3.5965 1 168080 + 44170 21338 27972 27984 50808;50809 50808 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 567.3308715820312 2 567.330539 1132.64652 0.48467 0.00027497 -0.10691 -6.0653E-05 0.37776 0.00021431 567.3303250133877 82.226 0.095306 85.895 85.856 85.951 3.669 16 11 2 0 0 0 0.49026 1 19533 19533 1.6526 0.17072 1 88476 + 44171 21338 27972 27984 50810 50810 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 567.3306884765625 2 567.330539 1132.64652 0.4814 0.00027311 -0.04662 -2.6449E-05 0.43478 0.00024666 567.330424180349 81.477 0.44296 85.162 85.022 85.465 3.685 85 54 2 0 0 0 0.47197 1 19255 19255 3.5965 3.5965 1 285160 + 44172 21338 27972 27984 50811 50811 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 567.330539 1132.64652 0.46223 0.00026224 -1.0538 -0.00059787 -0.59161 -0.00033564 567.3298358174645 85.425 0.17174 85.425 85.281 85.452 0 0.23132 -0.0006763 NaN 3.5965 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 392900 + 44173 21338 27972 27984 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 567.330539 1132.64652 0.56134 0.00031846 -1.6658 -0.00094503 -1.1044 -0.00062657 567.3293323840098 86.428 0.16268 89.869 89.758 89.92 3.4407 0.18007 -6.5757E-05 NaN 3.5965 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 80252 + 44174 21338 27972 27984 0.0855074758567298 TKPRQKRGY 9 Unmodified _TKPRQKRGY_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 567.330539 1132.64652 0.42639 0.0002419 -1.9317 -0.0010959 -1.5053 -0.00085401 567.3291057942373 86.057 0.051285 89.67 89.654 89.705 3.613 -0.018192 -0.00036751 NaN 3.5965 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 30593 + 44175 21338 27972 27984 0.0855074758567298 TKPRRQDLLR 10 Unmodified _TKPRRQDLLR_ 0 0 0 REV__ENST00000558767.5_1_15:80445344-80452198:+|nuORF REV__ENST00000558767.5_1_15:80445344-80452198:+|nuORF MSMS UPN48_class_I_Rep_2 6 641.887451171875 2 641.888752 1281.76295 NaN NaN NaN NaN NaN NaN NaN 94.197 1 97.973 97.473 98.473 3.7761 0 0 0 0.53105 1 22399 22399 1.4819 0 1 + 44176 23005 27973 27985 50812 50812 0.13334066085553786 TKPYLGRR 8 Unmodified _TKPYLGRR_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MSMS UPN47_class_I_Rep_2 3 495.7958068847656 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 96.905 1 100.38 99.884 100.88 3.4791 0 0 0 0.40625 1 23800 23800 2.3027 0 1 44177 3333 27974 27986 50813 50813 0.08184288636903148 TKQDRGKKALI 11 Unmodified _TKQDRGKKALI_ 0 0 0 L1MC4_dup5272|chr3:142528162-142528854:-|1.118673342909177|0.0395040881382695|4.82|151.0|1|1|sense L1MC4_dup5272|chr3:142528162-142528854:-|1.118673342909177|0.0395040881382695|4.82|151.0|1|1|sense L1MC4_dup5272|chr3:142528162-142528854:-|1.118673342909177|0.0395040881382695|4.82|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 629.2718505859375 2 629.385511 1256.75647 NaN NaN NaN NaN NaN NaN NaN 55.471 1 58.949 58.449 59.449 3.4785 0 0 0 0.38417 1 12593 12593 1.0715 0.5467 1 44178 11502 27975 27987 50814 50814 0.1383612813419859 TKQGQALKS 9 Unmodified _TKQGQALKS_ 0 0 0 REV__L1PA6_dup169|chr1:97357838-97363959:+|2.2685149498084263|0.1303794113036645|4.12|151.0|59|1|sense REV__L1PA6_dup169|chr1:97357838-97363959:+|2.2685149498084263|0.1303794113036645|4.12|151.0|59|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.7771301269531 2 480.777274 959.539994 -0.21521 -0.00010347 -0.49364 -0.00023733 -0.70885 -0.0003408 480.77703933511344 21.456 0.69851 24.88 24.61 25.308 3.4241 110 76 2 0 0 0 0.48846 1 2364 2364 1.8442 0 1 59495 + 44179 29738 27976 27988 50815 50815 0.05860572300457534 TKQNRALL 8 Unmodified _TKQNRALL_ 0 0 0 L1MB4_dup2822|chr6:4828422-4830082:-|2.1189614248708137|0.0246918004289951|6.42|151.0|110|3|anti-sense L1MB4_dup2822|chr6:4828422-4830082:-|2.1189614248708137|0.0246918004289951|6.42|151.0|110|3|anti-sense L1MB4_dup2822|chr6:4828422-4830082:-|2.1189614248708137|0.0246918004289951|6.42|151.0|110|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.28778076171875 2 472.287808 942.561064 0.20441 9.654E-05 -0.05093 -2.4053E-05 0.15348 7.2486E-05 472.28772845661115 86.28 1.1071 89.713 89.293 90.4 3.4329 483 151 5 0 0 0 0.82752 1 21613 21613 2.5775 0 1 6101700 44180 10493 27977 27989 50816 50816 0.08748582399982752 TKQVKQLL 8 Unmodified _TKQVKQLL_ 0 0 0 L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|10|1|sense L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|10|1|sense L1MC4_dup8611|chr5:180016716-180017584:-|1.418830982370414|0.019554029719708|6.18|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 479.3097229003906 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 47.149 1 50.899 50.399 51.399 3.7494 0 0 0 0.40472 1 9291 9291 4.3292 0 1 44181 11527 27978 27990 50817 50817 0.12182923719615246 TKRDKLFFW 9 Unmodified _TKRDKLFFW_ 0 0 0 REV__L1PA13_dup511|chr1:246769928-246770586:-|1.7351999699931464|0.1954718453855088|3.15|149.0|8|2|sense REV__L1PA13_dup511|chr1:246769928-246770586:-|1.7351999699931464|0.1954718453855088|3.15|149.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 620.8448486328125 2 620.84549 1239.67643 NaN NaN NaN NaN NaN NaN NaN 75.619 1 79.185 78.685 79.685 3.5659 0 0 0 0.40038 1 17775 17775 0.6015 0 1 + 44182 29106 27979 27991 50818 50818 0.06617686530989886 TKRFHIPL 8 Unmodified _TKRFHIPL_ 0 0 0 L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|32|2|anti-sense L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|32|2|anti-sense L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|32|2|anti-sense MSMS UPN47_class_I_Rep_1 2 506.3082580566406 2 506.308544 1010.60253 NaN NaN NaN NaN NaN NaN NaN 81.182 1 84.669 84.169 85.169 3.4874 0 0 0 0.388 1 20253 20253 12.532 0 1 44183 12056 27980 27992 50819 50819 0.09765763159327889 TKRFHIPL 8 Unmodified _TKRFHIPL_ 0 0 0 L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|32|2|anti-sense L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|32|2|anti-sense L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 506.3080139160156 2 506.308544 1010.60253 0.2814 0.00014247 -1.0855 -0.00054961 -0.80412 -0.00040713 506.3078820236533 81.388 0.30836 84.711 84.551 84.859 3.3231 53 34 2 0 0 0 0.82752 1 20368 20368 12.532 0 1 87089 44184 12056 27980 27992 50820 50820 0.09765763159327889 TKRGGRPA 8 Unmodified _TKRGGRPA_ 0 0 0 REV__ENSG00000170561|ENST00000302057|IRX2 REV__ENSG00000170561|ENST00000302057|IRX2 MSMS UPN47_class_I_Rep_1 2 421.7513427734375 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 68.882 1 72.249 71.749 72.749 3.3678 0 0 0 0.40738 1 16657 16657 0.79363 0 1 + 44185 20369 27981 27993 50821 50821 0.06114873397223164 TKRGGRPA 8 Unmodified _TKRGGRPA_ 0 0 0 REV__ENSG00000170561|ENST00000302057|IRX2 REV__ENSG00000170561|ENST00000302057|IRX2 MSMS UPN48_class_I_Rep_2 6 421.75140380859375 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 69.19 1 72.712 72.212 73.212 3.5216 0 0 0 0.40738 1 16012 16012 0.79363 0 1 + 44186 20369 27981 27993 50822 50822 0.06114873397223164 TKRHRTQKL 9 Unmodified _TKRHRTQKL_ 0 0 0 REV__L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|21|2|sense REV__L1PB4_dup6427|chr15:64236320-64237283:+|1.3781506335275298|0.0667500284261517|4.37|151.0|21|2|sense MSMS UPN48_class_I_Rep_1 5 584.356689453125 2 584.357088 1166.69962 NaN NaN NaN NaN NaN NaN NaN 83.116 1 86.703 86.203 87.203 3.5871 0 0 0 0.40098 1 19870 19870 0.45834 0 1 + 44187 30615 27982 27994 50823 50823 0.12294125368293862 TKRIEKYQRDR 11 Unmodified _TKRIEKYQRDR_ 0 0 0 REV__L1M2_dup7520|chr13:95740838-95742765:-|1.4713425405557454|0.080618155382505|4.19|151.0|52|3|sense REV__L1M2_dup7520|chr13:95740838-95742765:-|1.4713425405557454|0.080618155382505|4.19|151.0|52|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 498.28277587890625 3 498.282946 1491.82701 -0.16193 -8.0685E-05 -0.20033 -9.982E-05 -0.36225 -0.0001805 498.28276044523574 28.961 1.036 32.453 32.004 33.04 3.4923 171 82 3 0 0 0 0.68024 1 4537 4537 0.50596 0.50596 1 130200 + 44188 24234 27983 27995 50824 50824 0.10076801451805295 TKRITGWL 8 Unmodified _TKRITGWL_ 0 0 0 L1MB8_dup6883|chr7:158810681-158811003:+|1.971635362585166|0.0236086860332141|6.38|151.0|11|3|sense L1MB8_dup6883|chr7:158810681-158811003:+|1.971635362585166|0.0236086860332141|6.38|151.0|11|3|sense L1MB8_dup6883|chr7:158810681-158811003:+|1.971635362585166|0.0236086860332141|6.38|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7929382324219 2 487.792727 973.5709 0.24907 0.00012149 -1.1788 -0.00057499 -0.92968 -0.00045349 487.79185571128846 74.755 0.77141 78.345 77.885 78.656 3.59 135 85 2 0 0 0 0.82752 1 17523 17523 0.79363 0 1 213500 44189 11029 27984 27996 50825 50825 0.08305770405354451 TKRKRLKYD 9 Unmodified _TKRKRLKYD_ 0 0 0 REV__ENSG00000101343|ENST00000536226|CRNKL1 REV__ENSG00000101343|ENST00000536226|CRNKL1 MSMS UPN48_class_I_Rep_1 5 604.3662719726562 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 103.1 1 106.71 106.21 107.21 3.6164 0 0 0 0.40098 1 24853 24853 0.45834 0 1 + 44190 18156 27985 27997 50826 50826 0.12459876308253115 TKRKSKEKPH 10 Unmodified _TKRKSKEKPH_ 0 0 0 L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 619.8695678710938 2 619.870028 1237.7255 0.57811 0.00035835 -0.8911 -0.00055237 -0.31299 -0.00019401 619.8694521823205 88.277 0.20579 91.724 91.565 91.77 3.4471 29 23 2 0 0 0 0.56333 1 21957 21957 1.4819 0.28856 1 73358 44191 13506 27986 27998 50827 50827 0.11614974819940471 TKRKSKEKPH 10 Unmodified _TKRKSKEKPH_ 0 0 0 L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 619.8707885742188 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 85.503 1 88.875 88.375 89.375 3.3716 0 0 0 0.53105 1 21420 21420 1.4819 0.28856 1 44192 13506 27986 27998 50828 50828 0.11614974819940471 TKRKSKEKPH 10 Unmodified _TKRKSKEKPH_ 0 0 0 L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 619.8693237304688 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 88.227 1 91.615 91.115 92.115 3.3873 0 0 0 0.53105 1 22126 22126 1.4819 0.28856 1 44193 13506 27986 27998 50829 50829 0.11614974819940471 TKRKSKEKPH 10 Unmodified _TKRKSKEKPH_ 0 0 0 L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 619.8702392578125 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 88.092 1 91.902 91.402 92.402 3.8104 0 0 0 0.53105 1 20908 20908 1.4819 0.28856 1 44194 13506 27986 27998 50830 50830 0.11614974819940471 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 634.3778076171875 2 634.377686 1266.74082 0.56683 0.00035958 -0.92345 -0.00058582 -0.35663 -0.00022624 634.3776539276278 104.17 0.39134 107.93 107.79 108.18 3.7627 97 63 2 0 0 0 0.54822 2 25598 25598;25624 5.7319 0 1 56500000 + 44195 29435 27987 27999 50831;50832 50831 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 634.3775024414062 2 634.377686 1266.74082 0.56686 0.0003596 -1.1248 -0.00071357 -0.55797 -0.00035397 634.3774642104465 106.34 0.13445 110.05 109.99 110.12 3.7088 28 18 2 0 0 0 0.56118 1 26086 26086 2.9952 0 1 265500 + 44196 29435 27987 27999 50833 50833 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3779907226562 2 634.377686 1266.74082 0.63469 0.00040263 -0.12104 -7.6783E-05 0.51365 0.00032585 634.377832046272 103.75 0.43091 107.28 107.18 107.61 3.5289 178 67 4 0 0 0 0.54822 2 25200 25200;25270 5.7319 0 1 144370000 + 44197 29435 27987 27999 50834;50835 50834 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3779296875 2 634.377686 1266.74082 0.63475 0.00040267 -0.89029 -0.00056478 -0.25555 -0.00016211 634.3773948277748 105.91 0.32784 109.45 109.38 109.71 3.5345 114 48 4 0 0 0 0.56118 2 25684 25684;25710 2.9952 0 1 1028100 + 44198 29435 27987 27999 50836;50837 50836 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 634.3779907226562 2 634.377686 1266.74082 0.63451 0.00040252 -0.7056 -0.00044762 -0.071086 -4.5096E-05 634.3777186687522 106.2 0.10651 109.74 109.68 109.79 3.5345 25 15 2 0 0 0 0.56118 1 25735 25735 2.9952 0 1 343380 + 44199 29435 27987 27999 50838 50838 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 634.3779296875 2 634.377686 1266.74082 0.51363 0.00032583 -0.68322 -0.00043342 -0.16959 -0.00010758 634.3777348238691 104.74 0.28881 108.26 108.02 108.31 3.5247 85 45 3 0 0 0 0.54822 1 25658 25658 5.7319 0 1 79744000 + 44200 29435 27987 27999 50839 50839 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3778076171875 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 103.58 1 107.08 106.58 107.58 3.5057 0 0 0 0.53105 1 25409 25409 5.7319 0 1 + 44201 29435 27987 27999 50840 50840 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3775024414062 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 103.69 1 107.22 106.72 107.72 3.5205 0 0 0 0.53105 1 25435 25435 5.7319 0 1 + 44202 29435 27987 27999 50841 50841 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3776245117188 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 104.86 1 108.39 107.89 108.89 3.5308 0 0 0 0.53105 1 25693 25693 5.7319 0 1 + 44203 29435 27987 27999 50842 50842 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3773193359375 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 104.95 1 108.48 107.98 108.98 3.5308 0 0 0 0.53105 1 25714 25714 5.7319 0 1 + 44204 29435 27987 27999 50843 50843 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3778076171875 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 105.31 1 108.84 108.34 109.34 3.5308 0 0 0 0.53105 1 25790 25790 5.7319 0 1 + 44205 29435 27987 27999 50844 50844 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3777465820312 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 105.79 1 109.32 108.82 109.82 3.5308 0 0 0 0.53105 1 25886 25886 5.7319 0 1 + 44206 29435 27987 27999 50845 50845 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 634.3775024414062 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 105.91 1 109.44 108.94 109.94 3.5367 0 0 0 0.53105 1 25911 25911 8.1555 2.4237 1 + 44207 29435 27987 27999 50846 50846 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 634.3779907226562 2 634.377686 1266.74082 0.43225 0.00027421 -0.77401 -0.00049101 -0.34176 -0.00021681 634.3773491289256 103.5 0.31113 107.12 106.84 107.15 3.6209 132 44 4 0 0 0 0.54822 2 24943 24885;24943 5.7319 0 1 115830000 + 44208 29435 27987 27999 50847;50848 50848 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 634.8782958984375 2 634.377686 1266.74082 0.43219 0.00027417 -0.4697 -0.00029796 -0.037506 -2.3793E-05 634.3774103241661 105.43 0.76817 109.06 109.02 109.79 3.6277 202 101 3 0 0 0 0.56374 1 25520 25520 1.1933 0 1 2173500 + 44209 29435 27987 27999 50849 50849 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 634.377685546875 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 105.16 1 108.78 108.28 109.28 3.6247 0 0 0 0.53105 1 25336 25336 5.7319 0 1 + 44210 29435 27987 27999 50850 50850 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 634.3776245117188 2 634.377686 1266.74082 NaN NaN NaN NaN NaN NaN NaN 105.28 1 108.91 108.41 109.41 3.6247 0 0 0 0.53105 1 25364 25364 5.7319 0 1 + 44211 29435 27987 27999 50851 50851 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.3790893554688 2 634.377686 1266.74082 0.61934 0.0003929 -0.17303 -0.00010976 0.44632 0.00028313 634.3781052039409 103.81 0.38365 107.56 107.5 107.88 3.7434 99 61 2 0 0 0 0.54822 1 24539 24539 5.7319 0 1 67264000 + 44212 29435 27987 27999 50852 50852 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 634.3773803710938 2 634.377686 1266.74082 0.61931 0.00039288 -0.6358 -0.00040334 -0.01649 -1.0461E-05 634.3774459239958 106.3 0.088951 109.99 109.97 110.06 3.6899 14 12 2 0 0 0 0.56118 1 25071 25071 2.9952 0 1 71088 + 44213 29435 27987 27999 50853 50853 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 634.377686 1266.74082 0.72475 0.00045977 -0.94142 -0.00059722 -0.21667 -0.00013745 634.3773415232217 109.94 0.1461 109.94 109.9 110.04 0 -0.051041 -0.00011277 NaN 2.9952 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 282560 + 44214 29435 27987 27999 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 634.377686 1266.74082 0.72468 0.00045972 0.86859 0.00055102 1.5933 0.0010107 634.3784626220952 107.33 0.099121 107.33 107.26 107.36 0 0.0091635 0.0014063 NaN 5.7319 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 25363000 + 44215 29435 27987 27999 0.11811841617122809 TKRKTTYRTI 10 Unmodified _TKRKTTYRTI_ 0 0 0 REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense REV__L1PA16_dup9557|chr10:63513947-63514791:+|1.308773362233734|0.0194800856878108|6.07|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 634.377686 1266.74082 0.49722 0.00031543 -0.84413 -0.00053549 -0.34691 -0.00022007 634.3773287128755 106.29 0.15008 109.97 109.87 110.02 3.6834 -0.015125 1.0678E-05 NaN 2.9952 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 119070 + 44216 29435 27987 27999 0.11811841617122809 TKRKYCNSY 9 Unmodified _TKRKYCNSY_ 0 0 0 L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|10|1|sense L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|10|1|sense L1PA2_dup4188|chr13:95732040-95733388:-|1.1398029650126869|0.0149555030265137|6.25|150.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 581.7874755859375 2 581.787315 1161.56008 NaN NaN NaN NaN NaN NaN NaN 60.523 1 63.997 63.497 64.497 3.4737 0 0 0 0.37476 1 13395 13395 6.7232 0 1 44217 14209 27988 28000 50854 50854 -0.014240000312383927 TKRLHPVP 8 Unmodified _TKRLHPVP_ 0 0 0 L1HS_dup122|chr1:231646102-231652225:-|2.5538957682667447|0.0218340126652748|6.87|150.0|4|1|sense L1HS_dup122|chr1:231646102-231652225:-|2.5538957682667447|0.0218340126652748|6.87|150.0|4|1|sense L1HS_dup122|chr1:231646102-231652225:-|2.5538957682667447|0.0218340126652748|6.87|150.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 474.2907409667969 2 474.292894 946.571235 0.21888 0.00010382 -1.9688 -0.0009338 -1.7499 -0.00082998 474.29066555853194 62.095 0.53306 65.606 65.332 65.865 3.5104 65 46 2 0 0 0 0.72333 1 13797 13797 0.69038 0 1 279960 44218 8472 27989 28001 50855 50855 0.09581190125209105 TKRLKKKK 8 Unmodified _TKRLKKKK_ 0 0 0 REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|152|3|sense REV__L1PB1_dup762|chr1:235846062-235851563:+|10.88382346567396|0.2275275695306491|5.58|151.0|152|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.3665161132812 2 515.366393 1028.71823 0.28267 0.00014568 0.077498 3.994E-05 0.36017 0.00018562 515.3663415905927 108.18 0.43124 111.71 111.46 111.89 3.5333 96 46 3 0 0 0 0.82752 1 26217 26217 0.6015 0 1 21581000 + 44219 30490 27990 28002 50856 50856 0.20502287010162945 TKRLRLTH 8 Unmodified _TKRLRLTH_ 0 0 0 L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|53|2|sense;L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|87|2|sense;L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|32|1|sense;L1PA5_dup7630|chr10:21778610-21781440:+|2.2736454757078475|0.0988583260623403|4.52|151.0|34|1|sense;L1PA11_dup3834|chr18:9164379-9165311:-|1.251563429299333|0.0220157740104387|5.83|151.0|15|2|sense L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|53|2|sense L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|53|2|sense MSMS UPN47_class_I_Rep_2 3 512.8221435546875 2 512.82235 1023.63015 NaN NaN NaN NaN NaN NaN NaN 60.818 1 64.083 63.583 64.583 3.2654 0 0 0 0.40798 1 14255 14255 0 0 1 44220 13681 27991 28003 50857 50857 0.11927666419535399 TKRLRWWVK 9 Unmodified _TKRLRWWVK_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MSMS UPN46_class_I_Rep_3 1 636.8876342773438 2 636.888024 1271.7615 NaN NaN NaN NaN NaN NaN NaN 34.723 1 34.723 34.223 35.223 0 0 0 0 0.4007 1 6234 6234 0.52476 0.066424 1 + 44221 20804 27992 28004 50858 50858 0.13648476787398067 TKRLRWWVK 9 Unmodified _TKRLRWWVK_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MSMS UPN46_class_I_Rep_3 1 636.8872680664062 2 636.888024 1271.7615 NaN NaN NaN NaN NaN NaN NaN 38.615 1 38.615 38.115 39.115 0 0 0 0 0.4007 1 7365 7365 0.52476 0.12405 1 + 44222 20804 27992 28004 50859 50859 0.13648476787398067 TKRPGLFRVR 10 Unmodified _TKRPGLFRVR_ 0 0 0 REV__ENST00000342665.4_2_20:306256-306373:+|nuORF REV__ENST00000342665.4_2_20:306256-306373:+|nuORF MSMS UPN47_class_I_Rep_1 2 615.3961791992188 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 93.241 1 96.977 96.477 97.477 3.736 0 0 0 0.53105 1 23201 23201 1.4819 0 1 + 44223 21830 27993 28005 50860 50860 0.14643288782053787 TKRRHVFRLTT 11 Unmodified _TKRRHVFRLTT_ 0 0 0 ENST00000568570.1_1_16:31993258-32005419:+|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;ENSG00000275832|ENST00000622683|ARHGAP23 ENST00000568570.1_1_16:31993258-32005419:+|nuORF ENST00000568570.1_1_16:31993258-32005419:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 472.2834777832031 3 472.28451 1413.8317 0.086217 4.0719E-05 -2.0524 -0.00096931 -1.9662 -0.00092859 472.2833930533018 93.617 0.41106 97.238 97.078 97.489 3.6208 69 47 2 0 0 0 0.6724 1 22499 22499 1.2148 0.70888 1 134810 44224 5828 27994 28006 50861 50861 0.14133730385242416 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MULTI-MSMS UPN47_class_I_Rep_2 3 507.35491943359375 2 506.853119 1011.69168 0.35519 0.00018003 -0.25705 -0.00013028 0.09814 4.9742E-05 506.85293416258435 108.5 0.74386 112.03 111.91 112.65 3.5333 125 84 2 0 0 0 0.82752 1 26376 26376 0.79363 0 1 17334000 44225 16792 27995 28007 50862 50862 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MSMS UPN47_class_I_Rep_3 4 506.853515625 2 506.853119 1011.69168 NaN NaN NaN NaN NaN NaN NaN 108.56 1 112.1 111.6 112.6 3.5382 0 0 0 0.40738 1 26583 26583 0.79363 0 1 44226 16792 27995 28007 50863 50863 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MULTI-MSMS UPN48_class_I_Rep_1 5 506.8531188964844 2 506.853119 1011.69168 0.21433 0.00010864 0.069679 3.5317E-05 0.28401 0.00014395 506.85303945292736 108.25 0.40982 111.88 111.79 112.2 3.6313 81 37 5 0 0 0 0.82752 1 26240 26240 0.79363 0 1 12772000 44227 16792 27995 28007 50864 50864 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MULTI-MSMS UPN48_class_I_Rep_1 5 506.85284423828125 2 506.853119 1011.69168 0.21408 0.00010851 -0.27339 -0.00013857 -0.059309 -3.0061E-05 506.85300463546946 109.53 0.49411 113.16 112.97 113.47 3.6321 91 63 2 0 0 0 0.82752 1 26669 26669 0.79363 0 1 723650 44228 16792 27995 28007 50865 50865 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MSMS UPN48_class_I_Rep_1 5 506.85302734375 2 506.853119 1011.69168 NaN NaN NaN NaN NaN NaN NaN 109.54 1 113.17 112.67 113.67 3.6321 0 0 0 0.40738 1 26603 26603 0.79363 0 1 44229 16792 27995 28007 50866 50866 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MULTI-MSMS UPN48_class_I_Rep_2 6 506.8531799316406 2 506.853119 1011.69168 0.30964 0.00015694 0.0058349 2.9574E-06 0.31547 0.0001599 506.8530157830152 108.31 0.54762 111.98 111.72 112.27 3.6746 214 61 4 0 0 0 0.82752 3 25656 25614;25656;25747 2.3027 1.5091 1 61188000 44230 16792 27995 28007 50867;50868;50869 50868 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MULTI-MSMS UPN48_class_I_Rep_3 7 506.8532409667969 2 506.853119 1011.69168 0.27251 0.00013812 0.16475 8.3504E-05 0.43726 0.00022163 506.8530949633756 108.24 0.53003 111.92 111.67 112.2 3.6813 144 54 4 0 0 0 0.82752 1 25652 25652 2.3027 1.5091 1 60967000 44231 16792 27995 28007 50870 50870 0.18630598118852504 TKRRLLLI 8 Unmodified _TKRRLLLI_ 0 0 0 nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 nc|ENSG00000196440|Q5H9R4-2|ARMCX4 MULTI-MSMS UPN48_class_I_Rep_3 7 506.85321044921875 2 506.853119 1011.69168 0.27231 0.00013802 0.14293 7.2443E-05 0.41524 0.00021046 506.8530658890199 108.59 0.33267 112.26 112.18 112.51 3.6751 95 38 3 0 0 0 0.82752 2 25691 25691;25732 0.79363 0 1 20161000 44232 16792 27995 28007 50871;50872 50871 0.18630598118852504 TKRTRRIWARL 11 Unmodified _TKRTRRIWARL_ 0 0 0 REV__ENST00000511107.1_1_5:60241248-60448779:+|nuORF REV__ENST00000511107.1_1_5:60241248-60448779:+|nuORF MSMS UPN48_class_I_Rep_1 5 486.3036804199219 3 486.303904 1455.88988 NaN NaN NaN NaN NaN NaN NaN 96.237 1 99.85 99.35 100.35 3.6124 0 0 0 0.38417 1 23181 23181 0.094841 0.094841 1 + 44233 22736 27996 28008 50873 50873 0.18017412030530977 TKRYHFKH 8 Unmodified _TKRYHFKH_ 0 0 0 L1MB3_dup16888|chr21:44387193-44388546:+|1.0647843424834826|0.0115411630927371|6.53|151.0|25|2|sense L1MB3_dup16888|chr21:44387193-44388546:+|1.0647843424834826|0.0115411630927371|6.53|151.0|25|2|sense L1MB3_dup16888|chr21:44387193-44388546:+|1.0647843424834826|0.0115411630927371|6.53|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 558.8052978515625 2 558.8067 1115.59885 NaN NaN NaN NaN NaN NaN NaN 97.907 1 97.907 97.407 98.407 0 0 0 0 0.40625 1 23835 23835 2.3027 0 1 44234 10373 27997 28009 50874 50874 0.04567093385458065 TKSFQKKN 8 Unmodified _TKSFQKKN_ 0 0 0 REV__L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|28|3|sense REV__L1M4a1_dup1859|chr12:14473330-14474403:-|1.3559801861915228|0.0964492213030205|3.81|151.0|28|3|sense MSMS UPN47_class_I_Rep_2 3 490.780517578125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 20.973 1 24.381 23.881 24.881 3.4074 0 0 0 0.40746 1 2270 2270 0.69038 0 1 + 44235 24485 27998 28010 50875 50875 0.054488761630864246 TKSGKLKKV 9 Unmodified _TKSGKLKKV_ 0 0 0 ENST00000460870.1_1_1:208383501-208390355:-|nuORF;nc|ENSG00000076356|O75051-2|PLXNA2 ENST00000460870.1_1_1:208383501-208390355:-|nuORF ENST00000460870.1_1_1:208383501-208390355:-|nuORF MSMS UPN47_class_I_Rep_1 2 494.82879638671875 2 494.829309 987.644065 NaN NaN NaN NaN NaN NaN NaN 73.303 1 76.689 76.189 77.189 3.3861 0 0 0 0.4007 1 17992 17992 0.52476 0 1 44236 6854 27999 28011 50876 50876 0.14974899127980734 TKSKIYLV 8 Unmodified _TKSKIYLV_ 0 0 0 ENST00000335730.6_1_18:44089558-44181581:-|nuORF;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1 ENST00000335730.6_1_18:44089558-44181581:-|nuORF ENST00000335730.6_1_18:44089558-44181581:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 476.2967834472656 2 476.29731 950.580068 -0.31226 -0.00014873 -0.63371 -0.00030184 -0.94598 -0.00045057 476.29699692203985 34.595 0.74122 38.281 37.963 38.704 3.6859 73 59 2 0 0 0 0.82752 1 6321 6321 0.69038 0 1 110640 44237 4292 28000 28012 50877 50877 0.10280118971024876 TKSKTTSKKK 10 Unmodified _TKSKTTSKKK_ 0 0 0 AluSp_dup42014|chr17:21309994-21310308:-|1.7539002204954974|0.4480612942675392|1.97|151.0|4|1|sense AluSp_dup42014|chr17:21309994-21310308:-|1.7539002204954974|0.4480612942675392|1.97|151.0|4|1|sense AluSp_dup42014|chr17:21309994-21310308:-|1.7539002204954974|0.4480612942675392|1.97|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 568.8538208007812 2 568.853512 1135.69247 0.46907 0.00026683 -0.17799 -0.00010125 0.29108 0.00016558 568.8534561041796 97.868 0.079971 97.868 97.822 97.902 0 9 7 3 0 0 0 0.56543 1 23826 23826 0 0 1 316430 44238 236 28001 28013 50878 50878 0.13005347977218662 TKSKTTSKKK 10 Unmodified _TKSKTTSKKK_ 0 0 0 AluSp_dup42014|chr17:21309994-21310308:-|1.7539002204954974|0.4480612942675392|1.97|151.0|4|1|sense AluSp_dup42014|chr17:21309994-21310308:-|1.7539002204954974|0.4480612942675392|1.97|151.0|4|1|sense AluSp_dup42014|chr17:21309994-21310308:-|1.7539002204954974|0.4480612942675392|1.97|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 568.853512 1135.69247 0.49066 0.00027911 -0.020966 -1.1927E-05 0.46969 0.00026719 568.8532367798759 94.437 0.081764 98.188 98.162 98.243 3.7508 0.16001 0.00012332 NaN 0 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 76730 44239 236 28001 28013 0.13005347977218662 TKSSPPLL 8 Unmodified _TKSSPPLL_ 0 0 0 ENST00000271843.8_1_1:153946752-153946992:-|nuORF REV__MLT1D_dup881|chr1:167672319-167672799:-|1.9849019581705525|0.0040670413256899|8.93|151.0|34|3|anti-sense REV__MLT1D_dup881|chr1:167672319-167672799:-|1.9849019581705525|0.0040670413256899|8.93|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_2 3 421.7513122558594 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 69.171 1 72.447 71.947 72.947 3.2761 0 0 0 0.40581 1 16781 16781 2.8892 0 1 44240 6010 28002 28014 50879 50879 0.06383284011531032 TKSTNQKKK 9 Unmodified _TKSTNQKKK_ 0 0 0 L1ME2_dup2394|chr3:11549522-11550267:-|1.525477709465463|0.2002676705284098|2.93|151.0|1|1|sense L1ME2_dup2394|chr3:11549522-11550267:-|1.525477709465463|0.2002676705284098|2.93|151.0|1|1|sense L1ME2_dup2394|chr3:11549522-11550267:-|1.525477709465463|0.2002676705284098|2.93|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.8173217773438 2 531.81693 1061.61931 0.38495 0.00020472 0.38836 0.00020654 0.77331 0.00041126 531.8170151053033 79.725 0.57487 83.19 82.736 83.311 3.465 113 63 2 0 0 0 0.49026 1 19850 19850 1.6526 0 1 155440 44241 12497 28003 28015 50880 50880 0.0909621925461579 TKTDPLVP 8 Unmodified _TKTDPLVP_ 0 0 0 REV__L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|48|3|sense REV__L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|48|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 436.236328125 2 435.750193 869.485833 0.14783 6.4415E-05 -0.061017 -2.6588E-05 0.086809 3.7827E-05 435.74857585857745 99.831 0.076538 103.63 103.6 103.67 3.7942 13 8 2 0 0 0 0.72333 1 24691 24691 0.79363 0 1 98481 + 44242 24831 28004 28016 50881 50881 0.045869801488947815 TKTHIYKKRRQ 11 Unmodified _TKTHIYKKRRQ_ 0 0 0 REV__L1MC1_dup11183|chr15:56211240-56212683:+|1.6854771680941074|0.0193069786359904|6.45|151.0|8|1|sense REV__L1MC1_dup11183|chr15:56211240-56212683:+|1.6854771680941074|0.0193069786359904|6.45|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 486.9591064453125 3 486.959915 1457.85791 NaN NaN NaN NaN NaN NaN NaN 94.843 1 98.315 97.815 98.815 3.472 0 0 0 0.38417 1 23363 23363 0.36667 0.037403 1 + 44243 26500 28005 28017 50882 50882 0.1472999955672094 TKTIIFLA 8 Unmodified _TKTIIFLA_ 0 0 0 REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|2|1|sense REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 453.7852478027344 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.609 1 58.111 57.611 58.611 3.5014 0 0 0 0.40604 1 12331 12331 2.5775 0 1 + 44244 27457 28006 28018 50883 50883 0.1020473394231658 TKTIIFLA 8 Unmodified _TKTIIFLA_ 0 0 0 REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|2|1|sense REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 453.7849426269531 2 453.786579 905.558604 -0.23458 -0.00010645 -0.94597 -0.00042927 -1.1805 -0.00053571 453.7859620854901 56.045 0.8224 59.217 58.591 59.413 3.1721 66 53 2 0 0 0 0.82752 1 12685 12685 0.79363 0 1 200510 + 44245 27457 28006 28018 50884 50884 0.1020473394231658 TKTIIFLA 8 Unmodified _TKTIIFLA_ 0 0 0 REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|2|1|sense REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 453.7843017578125 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.519 1 52.746 52.246 53.246 3.2262 0 0 0 0.40738 1 10860 10860 0.79363 0 1 + 44246 27457 28006 28018 50885 50885 0.1020473394231658 TKTKKKKKK 9 Unmodified _TKTKKKKKK_ 0 0 0 AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.3931274414062 2 559.392608 1116.77066 0.6349 0.00035516 -0.26586 -0.00014872 0.36904 0.00020644 559.3923689224505 108.09 0.21807 111.62 111.43 111.65 3.5333 57 27 3 0 0 0 0.5015 1 26167 26167 0.45834 0 1 13286000 44247 397 28007 28019 50886 50886 0.21694825353119995 TKTKKKKKK 9 Unmodified _TKTKKKKKK_ 0 0 0 AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense;L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense AluYa5_dup1843|chr7:118703762-118704101:-|1.1399517640810548|0.0323474836259334|5.14|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.3402099609375 2 559.392608 1116.77066 0.4155 0.00023243 0.16738 9.3629E-05 0.58288 0.00032606 559.392577499837 108.25 0.39334 111.93 111.76 112.15 3.6813 77 38 3 0 0 0 0.5015 1 25546 25546 0.45834 0 1 25699000 44248 397 28007 28019 50887 50887 0.21694825353119995 TKTKLEIIY 9 Unmodified _TKTKLEIIY_ 0 0 0 REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|5|1|sense REV__L1PA15_dup2540|chr5:60986960-60989916:+|1.0493748349420833|0.03152749963504|5.06|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 554.8336791992188 2 554.834257 1107.65396 NaN NaN NaN NaN NaN NaN NaN 74.671 1 78.064 77.564 78.564 3.3937 0 0 0 0.38299 1 18390 18390 4.756 0 1 + 44249 29216 28008 28020 50888 50888 0.10444042342714965 TKTSHRHSR 9 Unmodified _TKTSHRHSR_ 0 0 0 REV__MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|45|3|sense REV__MSTA-int_dup948|chr5:39065448-39067086:-|1.261459755406835|0.1295813897207846|3.28|151.0|45|3|sense MSMS UPN47_class_I_Rep_1 2 555.2976684570312 2 555.29977 1108.58499 NaN NaN NaN NaN NaN NaN NaN 53.085 1 56.613 56.113 57.113 3.5278 0 0 0 0.39518 1 11864 11864 1.8442 0 1 + 44250 31882 28009 28021 50889 50889 0.03503815886369921 TKVASYLC 8 Unmodified _TKVASYLC_ 0 0 0 REV__ENSG00000127311|ENST00000247815|HELB REV__ENSG00000127311|ENST00000247815|HELB MSMS UPN46_class_I_Rep_3 1 442.7294006347656 2 442.730946 883.447339 NaN NaN NaN NaN NaN NaN NaN 104 1 104 103.5 104.5 0 0 0 0 0.40581 1 25390 25390 2.8892 0 1 + 44251 18872 28010 28022 50890 50890 0.0009535124271451423 TKVEYLQFL 9 Unmodified _TKVEYLQFL_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.819091796875 2 570.818607 1139.62266 0.34383 0.00019626 0.47239 0.00026965 0.81622 0.00046591 570.8187214988083 70.615 0.49722 73.986 73.939 74.436 3.3713 81 43 3 0 0 0 0.16799 1 17205 17205 23.79 0 1 484460 + 44252 24127 28011 28023 50891 50891 0.0584346930859283 TKVEYLQFL 9 Unmodified _TKVEYLQFL_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.8187255859375 2 570.818607 1139.62266 0.41572 0.0002373 0.27224 0.0001554 0.68797 0.0003927 570.81869163117 70.878 0.74016 74.161 73.834 74.574 3.2828 105 70 2 0 0 0 0.12795 2 17243 17243;17323 28.495 0 1 389170 + 44253 24127 28011 28023 50892;50893 50892 0.0584346930859283 TKVEYLQFL 9 Unmodified _TKVEYLQFL_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.8185424804688 2 570.818607 1139.62266 0.44782 0.00025563 0.18679 0.00010662 0.63461 0.00036225 570.8186306029635 70.922 0.41569 74.133 73.772 74.188 3.2113 61 34 2 0 0 0 0.12795 1 17346 17346 28.495 0 1 276620 + 44254 24127 28011 28023 50894 50894 0.0584346930859283 TKVEYLQFL 9 Unmodified _TKVEYLQFL_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.8174438476562 2 570.818607 1139.62266 0.44377 0.00025331 -1.0393 -0.00059324 -0.59552 -0.00033993 570.8187494953809 71.013 0.53964 74.479 74.18 74.719 3.466 103 58 2 0 0 0 0.12795 2 16616 16613;16616 28.495 0 1 257460 + 44255 24127 28011 28023 50895;50896 50896 0.0584346930859283 TKVEYLQFL 9 Unmodified _TKVEYLQFL_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.820068359375 2 570.818607 1139.62266 0.47608 0.00027175 -1.466 -0.00083679 -0.98987 -0.00056504 570.818586065695 70.793 0.39647 74.329 74.052 74.449 3.5359 74 45 2 0 0 0 0.16799 2 16476 16458;16476 23.79 0 1 164300 + 44256 24127 28011 28023 50897;50898 50898 0.0584346930859283 TKVEYLQFL 9 Unmodified _TKVEYLQFL_ 0 0 0 REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense REV__L1M1_dup7172|chr11:76018726-76021321:-|3.85486786022297|0.1378971700492364|4.81|151.0|140|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.8187255859375 2 570.818607 1139.62266 0.52153 0.0002977 -0.85103 -0.00048579 -0.3295 -0.00018809 570.8186462157876 70.764 0.56616 74.283 74.044 74.61 3.5185 87 59 2 0 0 0 0.16799 2 16413 16340;16413 23.79 0 1 319130 + 44257 24127 28011 28023 50899;50900 50900 0.0584346930859283 TKVKELDP 8 Unmodified _TKVKELDP_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 465.2705078125 2 465.26875 928.522947 0.22754 0.00010587 -0.14231 -6.6213E-05 0.085229 3.9654E-05 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.82752 1 25375 25375 0.79363 0 1 4396600 44258 942 28012 28024 50901 50901 0.055826516946467564 TKVLRAVL 8 Unmodified _TKVLRAVL_ 0 0 0 nc|ENSG00000185272|P57052-3|RBM11;ENST00000495055.1_1_21:15588507-15593471:+|nuORF nc|ENSG00000185272|P57052-3|RBM11 nc|ENSG00000185272|P57052-3|RBM11 MSMS UPN48_class_I_Rep_1 5 450.30548095703125 2 450.30547 898.596387 NaN NaN NaN NaN NaN NaN NaN 41.425 1 44.931 44.431 45.431 3.506 0 0 0 0.40472 1 7550 7550 4.3292 0 1 44259 7090 28013 28025 50902 50902 0.14303244927782544 TKVQKRARAGP 11 Unmodified _TKVQKRARAGP_ 0 0 0 REV__ENSG00000169515|ENST00000307522|CCDC8 REV__ENSG00000169515|ENST00000307522|CCDC8 MSMS UPN47_class_I_Rep_3 4 404.58306884765625 3 404.582556 1210.72584 NaN NaN NaN NaN NaN NaN NaN 52.313 1 55.518 55.018 56.018 3.2055 0 0 0 0.38417 1 11715 11715 1.1098 0.41209 1 + 44260 20316 28014 28026 50903 50903 0.12890394539772387 TKVRSLVTQ 9 Unmodified _TKVRSLVTQ_ 0 0 0 L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|202|2|anti-sense L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|202|2|anti-sense L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|202|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.314453125 2 516.314023 1030.61349 0.36504 0.00018847 0.082589 4.2642E-05 0.44763 0.00023112 516.3139774127435 90.145 0.91588 93.835 93.473 94.389 3.6899 426 122 4 0 0 0 0.5015 1 22458 22458 0.45834 0 1 3626000 44261 15452 28015 28027 50904 50904 0.0994112074295117 TKVRSLVTQ 9 Unmodified _TKVRSLVTQ_ 0 0 0 L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|202|2|anti-sense L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|202|2|anti-sense L1PREC2_dup4466|chrX:57178931-57183227:+|1.8435119189255285|0.0390122071986251|5.56|151.0|202|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 516.314023 1030.61349 0.36504 0.00018847 0.082589 4.2642E-05 0.44763 0.00023112 516.3139774127435 90.145 0.91588 93.835 93.473 94.389 3.6899 -0.049596 -1.2765E-06 NaN 0.45834 426 122 4 NaN NaN NaN NaN 0 NaN NaN 0 3626000 44262 15452 28015 28027 0.0994112074295117 TKVVRPSG 8 Unmodified _TKVVRPSG_ 0 0 0 ENST00000278353.9_2_11:43702285-43702444:+|nuORF ENST00000278353.9_2_11:43702285-43702444:+|nuORF ENST00000278353.9_2_11:43702285-43702444:+|nuORF MSMS UPN47_class_I_Rep_2 3 422.257080078125 2 422.255977 842.497401 NaN NaN NaN NaN NaN NaN NaN 99.884 1 103.38 102.88 103.88 3.4974 0 0 0 0.40738 1 24436 24436 0.79363 0 1 44263 6026 28016 28028 50905 50905 0.06985221962906962 TKWFLKYF 8 Unmodified _TKWFLKYF_ 0 0 0 REV__L1ME1_dup29409|chr20:520784-521755:+|1.252688891571788|0.0139395513001731|6.49|151.0|10|2|sense REV__L1ME1_dup29409|chr20:520784-521755:+|1.252688891571788|0.0139395513001731|6.49|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 566.8126220703125 2 566.813128 1131.6117 NaN NaN NaN NaN NaN NaN NaN 69.964 1 73.486 72.986 73.986 3.5216 0 0 0 0.40746 1 16244 16244 0.69038 0 1 + 44264 27741 28017 28029 50906 50906 0.05116111724964867 TKWFPFRR 8 Unmodified _TKWFPFRR_ 0 0 0 REV__MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|33|3|sense REV__MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|33|3|sense MSMS UPN47_class_I_Rep_2 3 569.319580078125 2 569.319443 1136.62433 NaN NaN NaN NaN NaN NaN NaN 16.294 1 19.68 19.18 20.18 3.3864 0 0 0 0.40746 1 1017 1017 0.69038 0 1 + 44265 31510 28018 28030 50907 50907 0.06148567907894176 TKWFQKRTNR 10 Unmodified _TKWFQKRTNR_ 0 0 0 REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 455.0205383300781 3 455.58971 1363.7473 0.023192 1.0566E-05 -2.1869 -0.00099631 -2.1637 -0.00098575 455.5891120700121 49.349 0.31774 52.874 52.743 53.061 3.5246 31 20 3 0 0 0 0.84575 1 9979 9979 1.7423 0.28716 1 89776 + 44266 22309 28019 28031 50908 50908 0.07997779568518126 TKWFQKRTNR 10 Unmodified _TKWFQKRTNR_ 0 0 0 REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 455.58971 1363.7473 0.079636 3.6281E-05 -1.4655 -0.00066768 -1.3859 -0.0006314 455.58908300136596 49.197 0.1581 52.826 52.724 52.882 3.6291 -0.01602 0.0001667 NaN 1.7423 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 74541 + 44267 22309 28019 28031 0.07997779568518126 TKWKWIIM 8 Unmodified _TKWKWIIM_ 0 0 0 Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|158|3|anti-sense Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|158|3|anti-sense Tigger2_dup2581|chr18:47908332-47910931:+|2.624100085061213|0.0384100441571969|6.09|151.0|158|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.315185546875 2 553.31498 1104.61541 NaN NaN NaN NaN NaN NaN NaN 41.856 1 45.093 44.593 45.593 3.2372 0 0 0 0.40738 1 8530 8530 0.79363 0 1 44268 33310 28020 28032 50909 50909 0.06728458227189549 TKWLVVLY 8 Unmodified _TKWLVVLY_ 0 0 0 REV__L1M4_dup15899|chr14:30997814-30998826:+|3.106622881870665|0.0147470754431643|7.72|151.0|3|1|sense REV__L1M4_dup15899|chr14:30997814-30998826:+|3.106622881870665|0.0147470754431643|7.72|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 511.2504577636719 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 65.05 1 68.229 67.729 68.729 3.1795 0 0 0 0.40738 1 15597 15597 0.79363 0 1 + 44269 24381 28021 28033 50910 50910 0.09132709350706136 TKWRKKFLNLK 11 Unmodified _TKWRKKFLNLK_ 0 0 0 L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|86|3|sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|86|3|sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|86|3|sense MSMS UPN48_class_I_Rep_3 7 487.9748229980469 3 487.973273 1460.89799 NaN NaN NaN NaN NaN NaN NaN 104.33 1 108.04 107.54 108.54 3.7192 0 0 0 0.38417 1 24629 24629 1.0136 0.55906 1 44270 9929 28022 28034 50911 50911 0.18597546227306339 TKWVEFHF 8 Unmodified _TKWVEFHF_ 0 0 0 REV__ENSG00000092847.13,AGO1,chr1,+,I3.1,35888611,35892556|47|5.53|1|intron REV__ENSG00000092847.13,AGO1,chr1,+,I3.1,35888611,35892556|47|5.53|1|intron MSMS UPN48_class_I_Rep_2 6 547.2774047851562 2 547.276909 1092.53927 NaN NaN NaN NaN NaN NaN NaN 26.931 1 30.562 30.062 31.062 3.6311 0 0 0 0.40738 1 3497 3497 0.79363 0 1 + 44271 18038 28023 28035 50912 50912 -0.0033022234858890442 TKWVKLHIKKR 11 Unmodified _TKWVKLHIKKR_ 0 0 0 REV__L1PB1_dup2010|chr3:25772220-25775304:-|3.20163005892952|0.0484391729669693|6.05|151.0|26|1|sense REV__L1PB1_dup2010|chr3:25772220-25775304:-|3.20163005892952|0.0484391729669693|6.05|151.0|26|1|sense MSMS UPN48_class_I_Rep_3 7 479.6434631347656 3 479.645267 1435.91397 NaN NaN NaN NaN NaN NaN NaN 50.2 1 53.821 53.321 54.321 3.621 0 0 0 0.38417 1 10159 10159 0.50596 0.051438 1 + 44272 30357 28024 28036 50913 50913 0.21345252464175246 TKYMRMITK 9 Unmodified _TKYMRMITK_ 0 0 0 ENST00000357799.8_1_2:201437527-201437578:+|nuORF ENST00000357799.8_1_2:201437527-201437578:+|nuORF ENST00000357799.8_1_2:201437527-201437578:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 586.3194580078125 2 586.319937 1170.62532 0.40753 0.00023894 -0.78216 -0.0004586 -0.37463 -0.00021966 586.3192745485013 99.232 0.44258 102.84 102.73 103.17 3.6065 110 59 2 0 0 0 0.30034 2 24018 23948;24018 13.906 3.8321 1 292980 44273 6295 28025 28037 50914;50915 50915 0.0468327817025056 TKYMRMITK 9 Unmodified _TKYMRMITK_ 0 0 0 ENST00000357799.8_1_2:201437527-201437578:+|nuORF ENST00000357799.8_1_2:201437527-201437578:+|nuORF ENST00000357799.8_1_2:201437527-201437578:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 586.3194580078125 2 586.319937 1170.62532 0.48159 0.00028237 -0.62874 -0.00036864 -0.14715 -8.6276E-05 586.319356545959 99.568 1.1909 103.33 102.89 104.08 3.7575 212 161 2 0 0 0 0.47197 1 23626 23626 3.5965 0 1 235690 44274 6295 28025 28037 50916 50916 0.0468327817025056 TKYMRMITK 9 Unmodified _TKYMRMITK_ 0 0 0 ENST00000357799.8_1_2:201437527-201437578:+|nuORF ENST00000357799.8_1_2:201437527-201437578:+|nuORF ENST00000357799.8_1_2:201437527-201437578:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 586.319937 1170.62532 0.48162 0.00028238 -0.73385 -0.00043027 -0.25223 -0.00014789 586.3192613450813 99.061 0.24261 102.83 102.78 103.02 3.7707 -0.0034841 4.2599E-05 NaN 13.906 46 35 2 NaN NaN NaN NaN 0 NaN NaN 0 150420 44275 6295 28025 28037 0.0468327817025056 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.3008422851562 2 549.301113 1096.58767 0.53893 0.00029604 0.42674 0.00023441 0.96567 0.00053045 549.3012481733193 100.22 0.087845 104.01 103.95 104.04 3.7942 20 12 2 0 0 0 0.37599 1 24781 24781 9.3831 0 1 72822 + 44276 26271 28026 28038 50917 50917 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.3005981445312 2 549.301113 1096.58767 0.49662 0.00027279 0.0080776 4.437E-06 0.50469 0.00027723 549.3010539352174 100.98 0.47849 104.45 104.04 104.52 3.4671 92 70 2 0 0 0 0.47197 1 24918 24918 3.5965 0 1 138870 + 44277 26271 28026 28038 50918 50918 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 549.3015747070312 2 549.301113 1096.58767 0.46566 0.00025579 0.074695 4.103E-05 0.54036 0.00029682 549.3011605595538 99.792 0.82528 103.4 103 103.82 3.6065 150 106 2 0 0 0 0.37599 7 24104 24033;24062;24104;24136;24169;24193;24199 9.3831 0 1 319280 + 44278 26271 28026 28038 50919;50920;50921;50922;50923;50924;50925 50921 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.301025390625 2 549.301113 1096.58767 0.48932 0.00026878 0.33444 0.00018371 0.82376 0.00045249 549.3012549363141 99.841 0.32504 103.6 103.35 103.67 3.7575 56 40 2 0 0 0 0.37599 1 23680 23680 9.3831 0 1 254740 + 44279 26271 28026 28038 50926 50926 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.3011474609375 2 549.301113 1096.58767 0.4893 0.00026877 0.044044 2.4194E-05 0.53334 0.00029296 549.3010338085419 99.993 0.34068 103.75 103.67 104.01 3.7575 80 47 2 0 0 0 0.37599 2 23750 23750;23781 9.3831 0 1 312550 + 44280 26271 28026 28038 50927;50928 50927 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.3010864257812 2 549.301113 1096.58767 0.42841 0.00023533 0.23218 0.00012754 0.66059 0.00036287 549.3011287038713 99.602 0.42392 103.49 103.33 103.75 3.8839 102 59 2 0 0 0 0.30034 3 23601 23570;23601;23631 13.906 0 1 322630 + 44281 26271 28026 28038 50929;50930;50931 50930 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.3016357421875 2 549.301113 1096.58767 0.42728 0.00023471 0.19356 0.00010633 0.62084 0.00034103 549.3010393074238 100.06 0.57621 103.91 103.69 104.27 3.8537 168 81 3 0 0 0 0.30034 5 23659 23656;23659;23687;23689;23716 13.906 0 1 308830 + 44282 26271 28026 28038 50932;50933;50934;50935;50936 50933 0.04324226500671102 TKYQSQKSK 9 Unmodified _TKYQSQKSK_ 0 0 0 REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense REV__L1MB7_dup468|chr1:43757205-43758153:+|2.979228273273544|0.025729440717587|6.86|151.0|12|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 549.301113 1096.58767 0.49654 0.00027275 0.038341 2.1061E-05 0.53488 0.00029381 549.3010110003827 100.55 0.15257 104.01 103.88 104.03 3.4671 0.091481 -0.00011216 NaN 13.906 27 22 2 NaN NaN NaN NaN 0 NaN NaN 0 96612 + 44283 26271 28026 28038 0.04324226500671102 TKYYVSYR 8 Unmodified _TKYYVSYR_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MULTI-MSMS UPN47_class_I_Rep_2 3 541.75927734375 2 540.279649 1078.54475 0.001299 7.0181E-07 0.52888 0.00028574 0.53018 0.00028644 540.2794771112243 33.926 0.71852 37.366 36.94 37.659 3.4398 89 45 3 0 0 0 0.82752 1 6008 6008 2.0598 0.21551 1 73919 44284 5077 28027 28039 50937 50937 0.00861456443226416 TLADIIARL 9 Unmodified _TLADIIARL_ 0 0 0 nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN MULTI-MSMS UPN46_class_I_Rep_3 1 493.7891540527344 2 493.305667 984.596781 0.3025 0.00014923 -0.15419 -7.6062E-05 0.14832 7.3165E-05 493.30559830070354 85.44 0.18391 85.44 85.297 85.481 0 23 17 2 0 0 0 0.073198 1 20385 20385 40.239 3.733 1 192100 44285 5565 28028 28040 50938 50938 0.10386619857001733 TLADIIARL 9 Unmodified _TLADIIARL_ 0 0 0 nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN MULTI-MSMS UPN46_class_I_Rep_3 1 493.3056945800781 2 493.305667 984.596781 0.30283 0.00014939 -0.064721 -3.1927E-05 0.2381 0.00011746 493.30556897043414 85.534 0.12484 85.534 85.474 85.599 0 21 14 2 0 0 0 0.026395 1 20424 20424 59.368 3.8656 1 243160 44286 5565 28028 28040 50939 50939 0.10386619857001733 TLADIIARL 9 Unmodified _TLADIIARL_ 0 0 0 nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN MSMS UPN46_class_I_Rep_3 1 493.30572509765625 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 85.725 1 85.725 85.225 86.225 0 0 0 0 0.029372 1 20465 20465 45.74 3.7843 1 44287 5565 28028 28040 50940 50940 0.10386619857001733 TLADIIARL 9 Unmodified _TLADIIARL_ 0 0 0 nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN MSMS UPN47_class_I_Rep_2 3 493.3057861328125 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 79.1 1 82.456 81.956 82.956 3.3554 0 0 0 0.25702 1 19674 19674 13.042 2.9685 1 44288 5565 28028 28040 50941 50941 0.10386619857001733 TLADIIARL 9 Unmodified _TLADIIARL_ 0 0 0 nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN MSMS UPN47_class_I_Rep_3 4 493.3063659667969 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 79.2 1 82.495 81.995 82.995 3.295 0 0 0 0.098423 1 19782 19782 24.991 3.454 1 44289 5565 28028 28040 50942 50942 0.10386619857001733 TLADIIARL 9 Unmodified _TLADIIARL_ 0 0 0 nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN nc|ENSG00000205978|Q9P2P1-2|NYNRIN MSMS UPN47_class_I_Rep_3 4 493.3061218261719 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 79.344 1 82.639 82.139 83.139 3.295 0 0 0 0.098423 1 19826 19826 24.991 3.454 1 44290 5565 28028 28040 50943 50943 0.10386619857001733 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MULTI-MSMS UPN46_class_I_Rep_3 1 515.7819213867188 2 515.782025 1029.5495 0.27834 0.00014356 0.68432 0.00035296 0.96266 0.00049652 515.7823430725733 70.65 0.13515 70.65 70.6 70.735 0 23 13 2 0 0 0 0.25207 1 16267 16267 16.942 6.1184 1 97370 44291 2630 28029 28041 50944 50944 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MULTI-MSMS UPN47_class_I_Rep_1 2 515.7828369140625 2 515.782025 1029.5495 0.24486 0.00012629 0.37966 0.00019582 0.62451 0.00032211 515.7822243022154 64.999 0.32108 68.355 68.092 68.414 3.3557 44 24 2 0 0 0 0.13631 3 15463 15412;15451;15463 26.884 13.85 1 115520 44292 2630 28029 28041 50945;50946;50947 50947 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MULTI-MSMS UPN47_class_I_Rep_1 2 515.781982421875 2 515.782025 1029.5495 0.24246 0.00012506 0.070741 3.6487E-05 0.3132 0.00016154 515.7820639745628 65.13 0.2262 68.485 68.413 68.64 3.3557 20 15 2 0 0 0 0.035561 2 15507 15507;15558 54.774 35.517 1 85032 44293 2630 28029 28041 50948;50949 50948 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MULTI-MSMS UPN47_class_I_Rep_2 3 515.7826538085938 2 515.782025 1029.5495 0.020768 1.0712E-05 0.61749 0.00031849 0.63826 0.0003292 515.7824227162257 65.274 0.51511 68.53 68.315 68.83 3.2556 64 37 2 0 0 0 0.0081951 4 15640 15557;15603;15640;15687 71.134 42.647 1 141040 44294 2630 28029 28041 50950;50951;50952;50953 50952 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_3 4 515.7825317382812 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 65.092 1 68.271 67.771 68.771 3.1795 0 0 0 0.26661 1 15610 15610 12.532 1.7076 1 44295 2630 28029 28041 50954 50954 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_3 4 515.7822265625 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 65.167 1 68.347 67.847 68.847 3.1795 0 0 0 0.081393 1 15634 15634 28.487 15.955 1 44296 2630 28029 28041 50955 50955 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_3 4 515.7822265625 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 65.232 1 68.412 67.912 68.912 3.1795 0 0 0 0.35339 1 15654 15654 7.9102 2.6795 1 44297 2630 28029 28041 50956 50956 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_3 4 515.7836303710938 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 65.331 1 68.511 68.011 69.011 3.1795 0 0 0 0.059724 1 15684 15684 34.102 19.264 1 44298 2630 28029 28041 50957 50957 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_3 4 515.781982421875 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 65.37 1 68.55 68.05 69.05 3.1795 0 0 0 0.0074061 1 15695 15695 57.471 32.072 1 44299 2630 28029 28041 50958 50958 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF nc|ENSG00000129691|Q9UBL3-2|ASH2L nc|ENSG00000129691|Q9UBL3-2|ASH2L MSMS UPN47_class_I_Rep_3 4 515.782958984375 2 515.782025 1029.5495 NaN NaN NaN NaN NaN NaN NaN 65.506 1 68.686 68.186 69.186 3.1795 0 0 0 0.35339 1 15737 15737 7.9102 0 1 44300 2630 28029 28041 50959 50959 0.035903405860153725 TLAEIAKAEL 10 Unmodified _TLAEIAKAEL_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|4|intron;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|6|intron nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MSMS UPN47_class_I_Rep_1 2 529.8084106445312 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 55.48 1 58.958 58.458 59.458 3.4785 0 0 0 0.53105 1 12596 12596 13.615 0 1 44301 2356 28030 28042 50960 50960 0.0754287892893899 TLAEIAKAEL 10 Unmodified _TLAEIAKAEL_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|4|intron;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|6|intron nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS UPN47_class_I_Rep_3 4 529.8082275390625 2 529.808239 1057.60193 0.34597 0.0001833 -0.5038 -0.00026692 -0.15783 -8.3618E-05 529.8080280000588 55.892 0.60871 59.07 58.81 59.419 3.1779 49 40 2 0 0 0 0.41414 1 12813 12813 18.373 2.224 1 97452 44302 2356 28030 28042 50961 50961 0.0754287892893899 TLAEIAKAEL 10 Unmodified _TLAEIAKAEL_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|5|intron;ENSG00000121390.19,PSPC1,chr13,-,I8.1,19703361,19705661|72|8.66|1|intron;ENSG00000121390|ENST00000338910|PSPC1;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|4|intron;ENSG00000121390.19,PSPC1,chr13,-,I6.1,19709600,19730238|74|11.97|6|intron nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 529.808239 1057.60193 0.30303 0.00016055 0.19369 0.00010262 0.49672 0.00026317 529.80820913274 55.351 0.18416 58.829 58.683 58.867 3.4785 -0.1202 0.00056981 NaN 18.373 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 61338 44303 2356 28030 28042 0.0754287892893899 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO ENST00000471419.6_1_X:70511819-70517312:+|nuORF ENST00000471419.6_1_X:70511819-70517312:+|nuORF MSMS UPN46_class_I_Rep_3 1 543.8241577148438 2 543.823889 1085.63323 NaN NaN NaN NaN NaN NaN NaN 67.278 1 67.278 66.778 67.778 0 0 0 0 0.53105 1 15307 15307 37.771 7.9307 1 44304 3462 28031 28043 50962 50962 0.09383451963026346 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS UPN47_class_I_Rep_1 2 487.2818298339844 2 487.281857 972.549162 0.13934 6.7897E-05 0.0065225 3.1783E-06 0.14586 7.1075E-05 487.2818776511327 74.085 0.81538 77.472 76.984 77.8 3.3861 183 81 3 0 0 0 0.0051925 7 18195 18126;18164;18195;18201;18240;18277;18283 125.53 63.927 1 636910 44305 3150 28032 28044 50963;50964;50965;50966;50967;50968;50969 50965 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS UPN47_class_I_Rep_2 3 487.2819519042969 2 487.281857 972.549162 0.25722 0.00012534 -0.20083 -9.7862E-05 0.05639 2.7478E-05 487.2818206906692 74.2 0.96932 77.505 77.08 78.05 3.3048 233 105 3 0 0 0 0.0029438 6 18272 18204;18236;18272;18306;18352;18386 149.91 63.927 1 675350 44306 3150 28032 28044 50970;50971;50972;50973;50974;50975 50972 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS UPN47_class_I_Rep_3 4 487.2817077636719 2 487.281857 972.549162 0.17478 8.5166E-05 -0.070613 -3.4408E-05 0.10416 5.0758E-05 487.2818679151735 74.139 0.76326 77.375 77.024 77.787 3.2363 141 82 3 0 0 0 0.0063213 2 18297 18297;18331 125.53 54.396 1 644170 44307 3150 28032 28044 50976;50977 50976 0.06178920866148019 TLAKFLNTL 9 Unmodified _TLAKFLNTL_ 0 0 0 REV__nc|ENSG00000124207|P55060-4|CSE1L REV__nc|ENSG00000124207|P55060-4|CSE1L MULTI-SECPEP UPN47_class_I_Rep_2 3 510.27569580078125 2 510.808042 1019.60153 0.13552 6.9223E-05 -4.2244 -0.0021578 -4.0888 -0.0020886 510.80738113005316 62.054 0.0849 65.314 65.256 65.341 3.2594 7 5 2 0 0 0 0.12157 1 14622 14622 6.2058 0 1 38279 + 44308 18799 28033 28045 50978 50978 0.09251503999769284 TLAKFLNTL 9 Unmodified _TLAKFLNTL_ 0 0 0 REV__nc|ENSG00000124207|P55060-4|CSE1L REV__nc|ENSG00000124207|P55060-4|CSE1L MULTI-MATCH UPN47_class_I_Rep_3 4 2 510.808042 1019.60153 0.21557 0.00011012 0.12917 6.5979E-05 0.34474 0.0001761 510.8077790397803 61.774 0.11453 64.941 64.864 64.979 3.1667 -0.18628 0.00030984 NaN 6.2058 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 38426 + 44309 18799 28033 28045 0.09251503999769284 TLAKIKGVLF 10 Unmodified _TLAKIKGVLF_ 0 0 0 MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|95|3|sense MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|95|3|sense MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|95|3|sense MSMS UPN48_class_I_Rep_3 7 545.3533935546875 2 545.35516 1088.69577 NaN NaN NaN NaN NaN NaN NaN 75.541 1 79.107 78.607 79.607 3.5659 0 0 0 0.53105 1 17751 17751 1.4819 0 1 44310 15970 28034 28046 50979 50979 0.15496642821881323 TLAKSTHIIR 10 Unmodified _TLAKSTHIIR_ 0 0 0 Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|8|2|sense Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|8|2|sense Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 570.3304443359375 2 570.348397 1138.68224 NaN NaN NaN NaN NaN NaN NaN 48.634 1 52.316 51.816 52.816 3.6819 0 0 0 0.53105 1 10509 10509 2.9952 1.151 1 44311 33266 28035 28047 50980 50980 0.11844785042649164 TLAKSTHIIR 10 Unmodified _TLAKSTHIIR_ 0 0 0 Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|8|2|sense Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|8|2|sense Tigger19b_dup3167|chr17:49757631-49757956:-|1.0336098090949029|0.0143570566924059|6.17|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 570.3296508789062 2 570.348397 1138.68224 NaN NaN NaN NaN NaN NaN NaN 48.937 1 52.596 52.096 53.096 3.6592 0 0 0 0.53105 1 10603 10603 2.9952 1.151 1 44312 33266 28035 28047 50981 50981 0.11844785042649164 TLAKYNNPK 9 Unmodified _TLAKYNNPK_ 0 0 0 REV__HAL1_dup11536|chr8:55926073-55926211:-|1.543532279466089|0.0084936594338738|7.51|151.0|10|2|anti-sense REV__HAL1_dup11536|chr8:55926073-55926211:-|1.543532279466089|0.0084936594338738|7.51|151.0|10|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 524.7930297851562 2 524.792924 1047.57129 0.35447 0.00018602 -0.27447 -0.00014404 0.079999 4.1983E-05 524.7926711388044 37.844 0.50005 41.56 41.3 41.8 3.7164 65 49 2 0 0 0 0.41259 1 6499 6499 7.2892 0 1 119870 + 44313 23337 28036 28048 50982 50982 0.04941145334532848 TLAKYNNPK 9 Unmodified _TLAKYNNPK_ 0 0 0 REV__HAL1_dup11536|chr8:55926073-55926211:-|1.543532279466089|0.0084936594338738|7.51|151.0|10|2|anti-sense REV__HAL1_dup11536|chr8:55926073-55926211:-|1.543532279466089|0.0084936594338738|7.51|151.0|10|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 524.7930297851562 2 524.792924 1047.57129 0.34435 0.00018071 -0.63254 -0.00033195 -0.28819 -0.00015124 524.7925521852543 37.818 0.60203 41.477 41.226 41.828 3.6595 94 60 2 0 0 0 0.41259 1 6396 6396 7.2892 0 1 108310 + 44314 23337 28036 28048 50983 50983 0.04941145334532848 TLALGLDTAAL 11 Unmodified _TLALGLDTAAL_ 0 0 0 REV__ENSG00000167355|ENST00000300773|OR51B5 REV__ENSG00000167355|ENST00000300773|OR51B5 MULTI-MSMS UPN47_class_I_Rep_3 4 529.80810546875 2 529.808239 1057.60193 0.34597 0.0001833 -0.5038 -0.00026692 -0.15783 -8.3618E-05 529.8080280000588 55.892 0.60871 59.07 58.81 59.419 3.1779 49 40 2 0 0 0 0.48412 1 12871 12871 8.1555 0 1 97452 + 44315 20218 28037 28049 50984 50984 0.0754287892893899 TLAMLLIGTV 10 Unmodified _TLAMLLIGTV_ 0 0 0 ENST00000474593.1_1_6:73985278-74020035:-|nuORF;nc|ENSG00000135314|Q4VXA5|KHDC1 ENST00000474593.1_1_6:73985278-74020035:-|nuORF ENST00000474593.1_1_6:73985278-74020035:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 515.8110961914062 2 516.312103 1030.60965 0.38629 0.00019945 0.32968 0.00017022 0.71597 0.00036967 516.3122273800647 63.839 0.14007 67.313 67.228 67.368 3.4743 15 11 2 0 0 0 0.84575 1 14363 14363 3.5965 3.5965 1 177300 44316 6950 28038 28050 50985 50985 0.09557314924882121 TLAQAGLPPA 10 Unmodified _TLAQAGLPPA_ 0 0 0 ENST00000603055.1_1_16:3614272-3617284:-|nuORF ENST00000603055.1_1_16:3614272-3617284:-|nuORF ENST00000603055.1_1_16:3614272-3617284:-|nuORF MSMS UPN48_class_I_Rep_1 5 469.76995849609375 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 29.496 1 33.046 32.546 33.546 3.5499 0 0 0 0.53105 1 4108 4108 1.8442 0 1 44317 7670 28039 28051 50986 50986 0.0520207141452147 TLATTMIAIL 10 Unmodified _TLATTMIAIL_ 0 0 0 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS UPN48_class_I_Rep_1 5 524.3096313476562 2 524.309561 1046.60457 0.31028 0.00016268 -0.067439 -3.5359E-05 0.24284 0.00012732 524.3094488737448 52.526 0.17313 56.046 55.97 56.143 3.5192 22 14 2 0 0 0 0.47413 1 10948 10948 13.906 0 1 68664 44318 3469 28040 28052 50987 50987 0.08313011062250553 TLAVYQQIL 9 Unmodified _TLAVYQQIL_ 0 0 0 ENSG00000174697|ENST00000308868|LEP ENSG00000174697|ENST00000308868|LEP ENSG00000174697|ENST00000308868|LEP MULTI-MSMS UPN48_class_I_Rep_3 7 524.8060913085938 2 524.8055 1047.59645 0.46324 0.00024311 -0.5432 -0.00028507 -0.079959 -4.1963E-05 524.8050931221437 64.434 0.79734 67.943 67.605 68.402 3.5083 131 69 2 0 0 0 0.35081 1 14590 14590 10.824 2.0785 1 300760 44319 4688 28041 28053 50988 50988 0.07455200137133033 TLAYHYLFV 9 Unmodified _TLAYHYLFV_ 0 0 0 REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|13|3|sense REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 563.801025390625 2 563.800217 1125.58588 0.49504 0.00027911 -0.36269 -0.00020449 0.13235 7.462E-05 563.8002000789887 69.017 0.66317 72.527 72.222 72.885 3.5094 62 47 2 0 0 0 0.45688 1 15884 15884 4.756 0 1 76166 + 44320 17314 28042 28054 50989 50989 0.028112174826901537 TLAYHYLFV 9 Unmodified _TLAYHYLFV_ 0 0 0 REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|13|3|sense REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|13|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 563.800217 1125.58588 0.49258 0.00027772 -0.41237 -0.00023249 0.080215 4.5225E-05 563.8001060271886 69.213 0.27473 72.735 72.51 72.784 3.5216 0.10392 -2.9501E-05 NaN 4.756 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 132470 + 44321 17314 28042 28054 0.028112174826901537 TLAYTHPAL 9 Unmodified _TLAYTHPAL_ 0 0 0 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant NBEAL2|p.K2124Afs*18|1|0.4|ENSG00000160796|chr3:47005047-47005048|AA/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 493.7691345214844 2 493.768917 985.523281 0.22529 0.00011124 -0.022729 -1.1223E-05 0.20256 0.00010002 493.7688160655461 54.233 0.73397 57.418 57.175 57.909 3.1856 72 45 2 0 0 0 0.48846 1 12437 12437 1.8442 0 1 90769 44322 3888 28043 28055 50990 50990 0.029940714145027414 TLCDREYLQR 10 Unmodified _TLCDREYLQR_ 0 0 0 REV__L1MD_dup3803|chr7:92675275-92676115:-|1.9775322227077912|0.0020989887270382|9.88|151.0|30|3|sense REV__L1MD_dup3803|chr7:92675275-92676115:-|1.9775322227077912|0.0020989887270382|9.88|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 432.8851318359375 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 87.698 1 87.698 87.198 88.198 0 0 0 0 0.53105 1 21028 21028 0.62683 0.39098 1 + 44323 27267 28044 28056 50991 50991 -0.006769608023205365 TLCDREYLQR 10 Unmodified _TLCDREYLQR_ 0 0 0 REV__L1MD_dup3803|chr7:92675275-92676115:-|1.9775322227077912|0.0020989887270382|9.88|151.0|30|3|sense REV__L1MD_dup3803|chr7:92675275-92676115:-|1.9775322227077912|0.0020989887270382|9.88|151.0|30|3|sense MSMS UPN47_class_I_Rep_1 2 432.8851013183594 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 97.96 1 101.75 101.25 102.25 3.7861 0 0 0 0.53105 1 24259 24259 0.62683 0 1 + 44324 27267 28044 28056 50992 50992 -0.006769608023205365 TLCFVWLPY 9 Unmodified _TLCFVWLPY_ 0 0 0 REV__MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|27|2|sense REV__MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|27|2|sense MSMS UPN47_class_I_Rep_2 3 571.3115234375 2 571.291171 1140.56779 NaN NaN NaN NaN NaN NaN NaN 65.276 1 68.531 68.031 69.031 3.2556 0 0 0 0.35339 1 15608 15608 7.9102 0.62092 1 + 44325 31423 28045 28057 50993 50993 0.0031275923636258085 TLCKYYEKR 9 Unmodified _TLCKYYEKR_ 0 0 0 ENST00000505230.1_1_5:86705105-86708611:-|nuORF;ENST00000510020.5_1_5:86704942-86708611:-|nuORF;ENSG00000134480|ENST00000256897|CCNH ENST00000505230.1_1_5:86705105-86708611:-|nuORF ENST00000505230.1_1_5:86705105-86708611:-|nuORF MSMS UPN48_class_I_Rep_3 7 401.877685546875 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 16.687 1 20.236 19.736 20.736 3.5486 0 0 0 0.4007 1 845 845 0.23584 0 1 44326 2851 28046 28058 50994 50994 0.018577436626401322 TLCNHQIMVI 10 Unmodified _TLCNHQIMVI_ 0 0 0 L1MA6_dup3556|chr10:26546428-26546787:-|1.985238543026528|0.0095646182162038|7.7|150.0|23|3|anti-sense L1MA6_dup3556|chr10:26546428-26546787:-|1.985238543026528|0.0095646182162038|7.7|150.0|23|3|anti-sense L1MA6_dup3556|chr10:26546428-26546787:-|1.985238543026528|0.0095646182162038|7.7|150.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 586.3036499023438 2 586.301744 1170.58893 0.41571 0.00024373 2.7372 0.0016048 3.1529 0.0018486 586.3035732663544 70.892 0.095909 74.175 74.154 74.25 3.2828 14 8 2 0 0 0 0.4965 1 17300 17300 12.241 1.4167 1 140920 44327 9978 28047 28059 50995 50995 0.010464012735837969 TLCNHQIMVI 10 Unmodified _TLCNHQIMVI_ 0 0 0 L1MA6_dup3556|chr10:26546428-26546787:-|1.985238543026528|0.0095646182162038|7.7|150.0|23|3|anti-sense L1MA6_dup3556|chr10:26546428-26546787:-|1.985238543026528|0.0095646182162038|7.7|150.0|23|3|anti-sense L1MA6_dup3556|chr10:26546428-26546787:-|1.985238543026528|0.0095646182162038|7.7|150.0|23|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 586.301744 1170.58893 0.45019 0.00026395 2.8166 0.0016514 3.2667 0.0019153 586.3032934319831 70.96 0.15909 74.171 74.098 74.257 3.2113 -0.0020219 5.6036E-05 NaN 12.241 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 150240 44328 9978 28047 28059 0.010464012735837969 TLCNIEGII 9 Unmodified _TLCNIEGII_ 0 0 0 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 MSMS UPN47_class_I_Rep_1 2 488.26239013671875 2 488.26261 974.510668 NaN NaN NaN NaN NaN NaN NaN 61.108 1 64.489 63.989 64.989 3.3815 0 0 0 0.27207 1 14306 14306 12.241 2.1667 1 + 44329 20437 28048 28060 50996 50996 0.022392919599724337 TLCNIEGII 9 Unmodified _TLCNIEGII_ 0 0 0 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 MSMS UPN47_class_I_Rep_1 2 488.2622375488281 2 488.26261 974.510668 NaN NaN NaN NaN NaN NaN NaN 61.315 1 64.697 64.197 65.197 3.3815 0 0 0 0.27207 1 14370 14370 12.241 0 1 + 44330 20437 28048 28060 50997 50997 0.022392919599724337 TLCNIEGII 9 Unmodified _TLCNIEGII_ 0 0 0 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 MULTI-MSMS UPN47_class_I_Rep_2 3 488.3030090332031 2 488.26261 974.510668 0.28132 0.00013736 -0.69301 -0.00033837 -0.4117 -0.00020102 488.262223149988 61.477 0.40005 64.736 64.566 64.966 3.2594 27 21 2 0 0 0 0.43153 1 14404 14404 6.2058 0 1 81646 + 44331 20437 28048 28060 50998 50998 0.022392919599724337 TLDDIKHKL 9 Unmodified _TLDDIKHKL_ 0 0 0 REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26 REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26 MSMS UPN48_class_I_Rep_3 7 541.81591796875 2 541.813856 1081.61316 NaN NaN NaN NaN NaN NaN NaN 71.409 1 74.936 74.436 75.436 3.5266 0 0 0 0.38916 1 16581 16581 3.2813 0 1 + 44332 18366 28049 28061 50999 50999 0.0756170102310989 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS UPN47_class_I_Rep_3 4 465.76055908203125 2 465.760758 929.506963 -0.04645 -2.1635E-05 -0.032119 -1.496E-05 -0.078569 -3.6594E-05 465.7605936440001 79.157 0.82408 82.452 82.048 82.872 3.295 160 75 3 0 0 0 0.045397 4 19718 19718;19754;19793;19844 50.855 14.182 1 413980 44333 2715 28050 28062 51000;51001;51002;51003 51000 0.03938945457775844 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 465.760758 929.506963 0.062788 2.9244E-05 -0.077535 -3.6113E-05 -0.014747 -6.8685E-06 465.76054770812505 79.064 0.78243 82.419 82.112 82.894 3.3554 -0.016703 -2.9149E-05 NaN 50.855 131 75 2 NaN NaN NaN NaN 0 NaN NaN 0 221790 44334 2715 28050 28062 0.03938945457775844 TLDEATPTL 9 Unmodified _TLDEATPTL_ 0 0 0 nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1 nc|ENSG00000100324|Q15750-2|TAB1 nc|ENSG00000100324|Q15750-2|TAB1 MSMS UPN47_class_I_Rep_1 2 480.7478942871094 2 480.747847 959.481142 NaN NaN NaN NaN NaN NaN NaN 51.742 1 55.336 54.836 55.836 3.5932 0 0 0 0.29868 1 11460 11460 10.824 0 1 44335 1492 28051 28063 51004 51004 -0.00021948784524283838 TLDELKQI 8 Unmodified _TLDELKQI_ 0 0 0 L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|40|2|sense;L1MEc_dup2383|chr2:89575914-89577159:-|1.263039850367669|0.1474267064561223|3.1|151.0|22|2|sense L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|40|2|sense L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|40|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.2737731933594 2 480.274032 958.533512 -0.22242 -0.00010682 -0.043138 -2.0718E-05 -0.26556 -0.00012754 480.2738791120478 42.691 0.73072 46.379 46.118 46.849 3.6875 82 51 2 0 0 0 0.82752 1 8734 8734 10.824 0 1 72102 44336 13080 28052 28064 51005 51005 0.05258634349092972 TLDFHTNTLY 10 Unmodified _TLDFHTNTLY_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.A4192Gfs*13|1|0.08|ENSG00000168702|chr2:140322028-140322029|-/C|frameshift_variant ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS UPN47_class_I_Rep_1 2 613.3010864257812 2 612.798403 1223.58225 0.31083 0.00019047 0.16563 0.0001015 0.47645 0.00029197 612.7982873260779 51.296 1.0377 54.889 54.477 55.515 3.5933 106 51 3 0 0 0 0.53004 1 11428 11428 8.1555 0 1 318790 44337 4386 28053 28065 51006 51006 -0.020594970817910507 TLDFHTNTLY 10 Unmodified _TLDFHTNTLY_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.A4192Gfs*13|1|0.08|ENSG00000168702|chr2:140322028-140322029|-/C|frameshift_variant ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS UPN47_class_I_Rep_2 3 612.7985229492188 2 612.798403 1223.58225 0.50906 0.00031195 -0.13634 -8.3547E-05 0.37272 0.0002284 612.7981809124057 51.607 0.81588 54.945 54.617 55.433 3.3386 95 40 3 0 0 0 0.55448 1 11372 11372 4.897 0 1 265380 44338 4386 28053 28065 51007 51007 -0.020594970817910507 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS UPN47_class_I_Rep_1 2 456.7427978515625 2 456.742899 911.471246 -0.34086 -0.00015568 0.0058511 2.6725E-06 -0.33501 -0.00015301 456.7427937267132 38.26 0.67494 41.925 41.645 42.32 3.6652 91 53 2 0 0 0 0.18929 3 7340 7340;7378;7420 21.747 5.8995 1 196130 44339 4828 28054 28066 51008;51009;51010 51008 0.01196908000770236 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS UPN47_class_I_Rep_2 3 456.7427062988281 2 456.742899 911.471246 -0.4841 -0.00022111 0.15915 7.269E-05 -0.32496 -0.00014842 456.74286881643627 38.54 0.7317 41.928 41.655 42.386 3.3879 112 56 3 0 0 0 0.09884 2 7468 7428;7468 34.102 13.649 1 163130 44340 4828 28054 28066 51011;51012 51012 0.01196908000770236 TLDLALLR 8 Unmodified _TLDLALLR_ 0 0 0 nc|ENSG00000186153|Q9NZC7-2|WWOX;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;ENSG00000186153|ENST00000566780|WWOX nc|ENSG00000186153|Q9NZC7-2|WWOX nc|ENSG00000186153|Q9NZC7-2|WWOX MULTI-SECPEP UPN47_class_I_Rep_3 4 457.2348327636719 2 457.78711 913.559667 -0.68434 -0.00031328 2.246 0.0010282 1.5616 0.00071489 457.7877656788148 36.775 0.14693 40.022 39.954 40.101 3.247 9 8 2 0 0 0 0.72333 1 6970 6970 2.5775 0 1 28383 44341 5145 28055 28067 51013 51013 0.09942948311243072 TLDLHNII 8 Unmodified _TLDLHNII_ 0 0 0 REV__ENSG00000149292|ENST00000529221|TTC12 REV__ENSG00000149292|ENST00000529221|TTC12 MSMS UPN48_class_I_Rep_2 6 469.7689514160156 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 34.728 1 38.401 37.901 38.901 3.6735 0 0 0 0.40604 1 5631 5631 2.5775 0 1 + 44342 19611 28056 28068 51014 51014 0.052020714145328384 TLDPQTGLFY 10 Unmodified _TLDPQTGLFY_ 0 0 0 nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY MULTI-MSMS UPN47_class_I_Rep_1 2 577.7901611328125 2 577.790047 1153.56554 0.35112 0.00020288 -0.38036 -0.00021977 -0.029237 -1.6893E-05 577.7898238722618 71.104 0.69121 74.479 74.166 74.858 3.3751 169 60 4 0 0 0 0.12384 1 17286 17286 74.2 38.073 1 350580 44343 16723 28057 28069 51015 51015 -0.0050999796776523 TLDPQTGLFY 10 Unmodified _TLDPQTGLFY_ 0 0 0 nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY MULTI-MSMS UPN47_class_I_Rep_3 4 577.790771484375 2 577.790047 1153.56554 0.45007 0.00026005 -0.46836 -0.00027061 -0.018286 -1.0566E-05 577.7896702491088 71.36 0.9067 74.579 74.182 75.089 3.2188 137 74 3 0 0 0 0.12384 3 17539 17458;17501;17539 74.2 50.179 1 255010 44344 16723 28057 28069 51016;51017;51018 51018 -0.0050999796776523 TLDPQTGLFY 10 Unmodified _TLDPQTGLFY_ 0 0 0 nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 577.790047 1153.56554 0.41983 0.00024257 -0.6965 -0.00040243 -0.27667 -0.00015986 577.7896578034248 71.31 0.86383 74.6 74.257 75.121 3.2899 0.13367 -0.00023113 NaN 74.2 198 74 4 NaN NaN NaN NaN 0 NaN NaN 0 316100 44345 16723 28057 28069 -0.0050999796776523 TLDPQTGLFY 10 Unmodified _TLDPQTGLFY_ 0 0 0 nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY MULTI-MATCH UPN48_class_I_Rep_2 6 2 577.790047 1153.56554 0.47002 0.00027157 0.2021 0.00011677 0.67211 0.00038834 577.7904641833738 70.844 0.023254 74.38 74.364 74.388 3.5359 -0.085953 0.00080727 NaN 74.2 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 52326 44346 16723 28057 28069 -0.0050999796776523 TLDPQTGLFY 10 Unmodified _TLDPQTGLFY_ 0 0 0 nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY nc|ENSG00000158636|Q7Z589-2|EMSY MULTI-MATCH UPN48_class_I_Rep_3 7 2 577.790047 1153.56554 0.53907 0.00031147 0.89768 0.00051867 1.4368 0.00083014 578.2922397877965 70.774 0.079109 74.292 74.257 74.336 3.5185 -0.17397 0.0016111 NaN 74.2 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 146680 44347 16723 28057 28069 -0.0050999796776523 TLDSKQYFTKG 11 Unmodified _TLDSKQYFTKG_ 0 0 0 REV__ENSG00000196693|ENST00000359467|ZNF33B REV__ENSG00000196693|ENST00000359467|ZNF33B MSMS UPN47_class_I_Rep_1 2 644.3329467773438 2 644.33261 1286.65067 NaN NaN NaN NaN NaN NaN NaN 43.99 1 47.685 47.185 48.185 3.6951 0 0 0 0.38417 1 9102 9102 2.4985 0.43874 1 + 44348 21051 28058 28070 51019 51019 0.018807474980121697 TLDTRTVDY 9 Unmodified _TLDTRTVDY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-MSMS UPN47_class_I_Rep_1 2 542.2689208984375 2 542.269478 1082.5244 -0.033627 -1.8235E-05 0.36513 0.000198 0.3315 0.00017976 542.269572971649 29.875 0.41847 33.62 33.423 33.841 3.7451 51 32 2 0 0 0 0.47197 1 4804 4804 3.5965 0 1 63547 44349 4915 28059 28071 51020 51020 -0.013557590072423409 TLDTRTVDY 9 Unmodified _TLDTRTVDY_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MULTI-MSMS UPN47_class_I_Rep_2 3 542.269287109375 2 542.269478 1082.5244 0.0071661 3.886E-06 -0.10361 -5.6182E-05 -0.09644 -5.2296E-05 542.2692219658943 30.01 0.25557 33.492 33.419 33.674 3.4821 30 22 2 0 0 0 0.33908 1 4879 4879 11.495 0 1 68519 44350 4915 28059 28071 51021 51021 -0.013557590072423409 TLDYECYD 8 Unmodified _TLDYECYD_ 0 0 0 nc|ENSG00000134365|Q92496-3|CFHR4;nc|ENSG00000134365|Q92496-2|CFHR4;ENSG00000134365|ENST00000608469|CFHR4 nc|ENSG00000134365|Q92496-3|CFHR4 nc|ENSG00000134365|Q92496-3|CFHR4 MSMS UPN46_class_I_Rep_3 1 511.1939392089844 2 511.19459 1020.37463 NaN NaN NaN NaN NaN NaN NaN 97.381 1 97.381 96.881 97.881 0 0 0 0 0.40746 1 23692 23692 0.69038 0 1 44351 2847 28060 28072 51022 51022 -0.1347444734135479 TLDYESYKF 9 Unmodified _TLDYESYKF_ 0 0 0 nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 MULTI-MSMS UPN48_class_I_Rep_1 5 583.2740478515625 2 583.274229 1164.53391 0.56379 0.00032884 -0.16111 -9.3972E-05 0.40268 0.00023487 583.2740404466728 61.731 0.72291 65.199 64.879 65.602 3.4678 141 66 3 0 0 0 0.30034 5 13722 13687;13722;13761;13800;13841 13.906 9.3831 1 293460 44352 3755 28061 28073 51023;51024;51025;51026;51027 51024 -0.0417799072172329 TLDYESYKF 9 Unmodified _TLDYESYKF_ 0 0 0 nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 MULTI-MSMS UPN48_class_I_Rep_2 6 583.2747192382812 2 583.274229 1164.53391 0.53729 0.00031338 -0.15574 -9.084E-05 0.38154 0.00022254 583.273957375532 61.704 0.74534 65.177 64.778 65.523 3.4738 124 59 3 0 0 0 0.30034 3 13788 13706;13744;13788 13.906 0.86358 1 287780 44353 3755 28061 28073 51028;51029;51030 51030 -0.0417799072172329 TLDYESYKF 9 Unmodified _TLDYESYKF_ 0 0 0 nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 MULTI-MSMS UPN48_class_I_Rep_3 7 583.2742309570312 2 583.274229 1164.53391 0.49818 0.00029058 -0.25934 -0.00015127 0.23884 0.00013931 583.2739498120442 61.458 0.86446 64.97 64.636 65.501 3.5128 143 73 3 0 0 0 0.30034 3 13575 13507;13575;13611 13.906 0.86358 1 398430 44354 3755 28061 28073 51031;51032;51033 51032 -0.0417799072172329 TLDYESYKF 9 Unmodified _TLDYESYKF_ 0 0 0 nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 nc|ENSG00000157212|Q6ZW49-2|PAXIP1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 583.274229 1164.53391 0.49818 0.00029058 -0.25934 -0.00015127 0.23884 0.00013931 583.2739498120442 61.458 0.86446 64.97 64.636 65.501 3.5128 -0.1452 -8.0733E-05 NaN 13.906 143 73 3 NaN NaN NaN NaN 0 NaN NaN 0 398430 44355 3755 28061 28073 -0.0417799072172329 TLEIIPSP 8 Unmodified _TLEIIPSP_ 0 0 0 ENST00000539563.5_1_3:115528395-115528695:-|nuORF ENST00000539563.5_1_3:115528395-115528695:-|nuORF ENST00000539563.5_1_3:115528395-115528695:-|nuORF MSMS UPN48_class_I_Rep_2 6 435.25067138671875 2 435.252569 868.490584 NaN NaN NaN NaN NaN NaN NaN 70.695 1 74.231 73.731 74.731 3.5359 0 0 0 0.4044 1 16457 16457 4.756 0 1 44356 7348 28062 28074 51034 51034 0.0510786429166501 TLEILLLQ 8 Unmodified _TLEILLLQ_ 0 0 0 ENST00000602775.5_1_5:139929747-139930248:-|nuORF ENST00000602775.5_1_5:139929747-139930248:-|nuORF ENST00000602775.5_1_5:139929747-139930248:-|nuORF MSMS UPN47_class_I_Rep_3 4 471.7956237792969 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 57.199 1 60.367 59.867 60.867 3.1681 0 0 0 0.40746 1 13200 13200 0.69038 0 1 44357 7668 28063 28075 51035 51035 0.10660699251184269 TLEKRLSIF 9 Unmodified _TLEKRLSIF_ 0 0 0 L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|217|3|anti-sense L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|217|3|anti-sense L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|217|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.8302612304688 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 80.015 1 83.324 82.824 83.824 3.309 0 0 0 0.39428 1 20025 20025 2.0598 0 1 44358 12919 28064 28076 51036 51036 0.10094577919812764 TLELQIIL 8 Unmodified _TLELQIIL_ 0 0 0 ENSG00000149133|ENST00000278409|OR5F1 ENSG00000149133|ENST00000278409|OR5F1 ENSG00000149133|ENST00000278409|OR5F1 MULTI-MSMS UPN48_class_I_Rep_1 5 471.7971496582031 2 471.797143 941.579734 0.13268 6.26E-05 -0.63597 -0.00030005 -0.50329 -0.00023745 471.7967166813857 69.822 1.0491 73.281 72.772 73.821 3.4598 166 80 3 0 0 0 0.82752 1 16360 16360 5.2307 0 1 373950 44359 3528 28065 28077 51037 51037 0.10660699251184269 TLELVTHIY 9 Unmodified _TLELVTHIY_ 0 0 0 REV__L1ME1_dup11828|chr6:87684370-87685045:-|1.0795442215529212|0.083184776844731|3.7|151.0|40|3|anti-sense REV__L1ME1_dup11828|chr6:87684370-87685045:-|1.0795442215529212|0.083184776844731|3.7|151.0|40|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.8148193359375 2 544.802957 1087.59136 NaN NaN NaN NaN NaN NaN NaN 14.331 1 14.331 13.831 14.831 0 0 0 0 0.39428 1 607 607 2.0598 0 1 + 44360 27581 28066 28078 51038 51038 0.05106896274514838 TLERQLLL 8 Unmodified _TLERQLLL_ 0 0 0 REV__ENSG00000171643|ENST00000317593|S100Z REV__ENSG00000171643|ENST00000317593|S100Z MSMS UPN47_class_I_Rep_3 4 493.30548095703125 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 69.366 1 72.571 72.071 73.071 3.2044 0 0 0 0.4044 1 16909 16909 4.756 0 1 + 44361 20416 28067 28079 51039 51039 0.10386619857001733 TLESYFQLY 9 Unmodified _TLESYFQLY_ 0 0 0 L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|132|3|anti-sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|132|3|anti-sense L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|132|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.2854614257812 2 582.284597 1162.55464 0.48498 0.00028239 0.10081 5.8702E-05 0.58579 0.0003411 582.2844105941085 78.284 0.85534 81.626 81.262 82.117 3.3428 229 94 3 0 0 0 0.42249 1 19359 19359 6.7232 0 1 531730 44362 11049 28068 28080 51040 51040 -0.020134003420253066 TLEVILCTY 9 Unmodified _TLEVILCTY_ 0 0 0 REV__ENST00000574429.1_1_17:6544939-6545152:+|nuORF REV__ENST00000574429.1_1_17:6544939-6545152:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 527.3109130859375 2 527.778093 1053.54163 0.36698 0.00019368 1.2362 0.00065243 1.6032 0.00084611 527.7797704766313 31.832 0.50879 35.533 35.22 35.728 3.7015 95 57 2 0 0 0 0.48846 1 4696 4696 1.8442 0 1 93504 + 44363 23089 28069 28081 51041 51041 0.017004452742185094 TLFALTSVVL 10 Unmodified _TLFALTSVVL_ 0 0 0 L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 532.3234252929688 2 532.323525 1062.6325 0.32456 0.00017277 -0.19003 -0.00010116 0.13453 7.1614E-05 532.3232469470472 65.771 0.64447 69.129 68.977 69.621 3.3576 74 41 2 0 0 0 0.36464 3 15760 15719;15760;15806 22.736 2.3217 1 174240 44364 14723 28070 28082 51042;51043;51044 51043 0.10368657313983931 TLFALTSVVL 10 Unmodified _TLFALTSVVL_ 0 0 0 L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 532.3233032226562 2 532.323525 1062.6325 0.2201 0.00011716 -0.064401 -3.4282E-05 0.1557 8.2881E-05 532.3233535567937 66.174 0.86362 69.433 69.229 70.092 3.2588 79 56 2 0 0 0 0.48573 1 15883 15883 13.042 1.5478 1 155180 44365 14723 28070 28082 51045 51045 0.10368657313983931 TLFALTSVVL 10 Unmodified _TLFALTSVVL_ 0 0 0 L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 532.323525 1062.6325 0.32456 0.00017277 -0.19003 -0.00010116 0.13453 7.1614E-05 532.3232469470472 65.771 0.64447 69.129 68.977 69.621 3.3576 -0.15213 -7.8273E-05 NaN 22.736 74 41 2 NaN NaN NaN NaN 0 NaN NaN 0 174240 44366 14723 28070 28082 0.10368657313983931 TLFALTSVVL 10 Unmodified _TLFALTSVVL_ 0 0 0 L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|188|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 532.323525 1062.6325 0.2201 0.00011716 -0.064401 -3.4282E-05 0.1557 8.2881E-05 532.3233535567937 66.174 0.86362 69.433 69.229 70.092 3.2588 0.15213 5.5481E-05 NaN 22.736 79 56 2 NaN NaN NaN NaN 0 NaN NaN 0 155180 44367 14723 28070 28082 0.10368657313983931 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN46_class_I_Rep_3 1 578.3057861328125 2 578.305864 1154.59717 0.47477 0.00027456 -0.011666 -6.7467E-06 0.4631 0.00026782 578.3059969993866 75.974 0.15399 75.974 75.84 75.994 0 22 14 3 0 0 0 0.086321 1 17699 17699 37.075 20.926 1 166240 44368 5830 28071 28083 51046 51046 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN47_class_I_Rep_1 2 578.3059692382812 2 578.305864 1154.59717 0.3453 0.00019969 0.10708 6.1923E-05 0.45238 0.00026161 578.3058973430963 70.163 0.40675 73.534 73.166 73.572 3.3713 98 38 3 0 0 0 0.0073203 3 17004 16967;17004;17039 103.82 56.075 1 1571500 44369 5830 28071 28083 51047;51048;51049 51048 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN47_class_I_Rep_1 2 578.3060302734375 2 578.305864 1154.59717 0.34728 0.00020083 0.02459 1.4221E-05 0.37187 0.00021505 578.3058403749961 70.409 0.4641 73.78 73.475 73.939 3.3713 150 46 4 0 0 0 0.0068267 3 17110 17074;17110;17148 125.04 77.289 1 1516400 44370 5830 28071 28083 51050;51051;51052 51051 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN47_class_I_Rep_2 3 578.3060302734375 2 578.305864 1154.59717 0.41187 0.00023819 -0.0088396 -5.112E-06 0.40303 0.00023307 578.3058194214233 70.515 0.76129 73.797 73.306 74.068 3.2828 232 72 4 0 0 0 0.0060665 5 17152 17077;17114;17152;17189;17224 90.135 42.386 1 1419400 44371 5830 28071 28083 51053;51054;51055;51056;51057 51055 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN47_class_I_Rep_2 3 578.305908203125 2 578.305864 1154.59717 0.41605 0.0002406 -0.43275 -0.00025026 -0.016702 -9.6587E-06 578.305638621216 70.866 0.52783 74.148 74.068 74.595 3.2828 72 48 2 0 0 0 0.0073203 1 17271 17271 71.708 31.758 1 551850 44372 5830 28071 28083 51058 51058 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN47_class_I_Rep_3 4 578.3060913085938 2 578.305864 1154.59717 0.44779 0.00025896 -0.023807 -1.3768E-05 0.42399 0.00024519 578.3058484289239 70.432 0.4084 73.643 73.281 73.689 3.2113 98 36 4 0 0 0 0.0055879 3 17197 17161;17197;17238 90.135 42.386 1 1085600 44373 5830 28071 28083 51059;51060;51061 51060 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN47_class_I_Rep_3 4 578.3060913085938 2 578.305864 1154.59717 0.44891 0.00025961 -0.19076 -0.00011032 0.25815 0.00014929 578.3057316834822 70.618 1.4855 73.829 73.689 75.175 3.2113 281 123 4 0 0 0 0.0060665 4 17316 17279;17316;17352;17392 100.09 52.342 1 1130400 44374 5830 28071 28083 51062;51063;51064;51065 51063 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN48_class_I_Rep_1 5 578.3065185546875 2 578.305864 1154.59717 0.45001 0.00026024 -0.064629 -3.7375E-05 0.38538 0.00022287 578.3057621816857 70.567 0.49365 74.026 73.647 74.14 3.4598 75 43 2 0 0 0 0.048729 3 16466 16389;16428;16466 49.527 23.259 1 429610 44375 5830 28071 28083 51066;51067;51068 51068 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN48_class_I_Rep_1 5 578.78759765625 2 578.305864 1154.59717 0.44942 0.0002599 -0.24353 -0.00014084 0.20589 0.00011907 578.3056263281103 70.71 0.26948 74.17 74.14 74.41 3.4598 39 30 2 0 0 0 0.16799 1 16505 16505 23.79 7.6407 1 274140 44376 5830 28071 28083 51069 51069 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN48_class_I_Rep_2 6 578.8072509765625 2 578.305864 1154.59717 0.47137 0.0002726 0.053894 3.1167E-05 0.52527 0.00030376 578.3058585760461 70.335 0.46109 73.871 73.591 74.052 3.5359 107 45 3 0 0 0 0.10956 2 16342 16342;16385 32.037 18.131 1 291950 44377 5830 28071 28083 51070;51071 51070 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN48_class_I_Rep_2 6 578.3057861328125 2 578.305864 1154.59717 0.46996 0.00027178 -0.43172 -0.00024966 0.038242 2.2116E-05 578.3056271398895 70.596 0.31024 74.132 74.037 74.347 3.5359 58 34 2 0 0 0 0.16799 1 16427 16427 23.79 9.8837 1 210480 44378 5830 28071 28083 51072 51072 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN48_class_I_Rep_3 7 578.3065795898438 2 578.305864 1154.59717 0.54154 0.00031317 -0.32461 -0.00018773 0.21692 0.00012545 578.3056680186353 70.245 0.31955 73.758 73.524 73.844 3.5129 64 25 3 0 0 0 0.065535 2 16216 16216;16260 42.312 24.166 1 302740 44379 5830 28071 28083 51073;51074 51073 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|4|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|2|intron;ENSG00000276043.5,UHRF1,chr19,+,I12.1,4945966,4947104|39|8.17|1|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|6|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|2|intron;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|3|intron;ENSG00000276043.5,UHRF1,chr19,+,I17.1,4954823,4956708|38|12.33|5|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron ENSG00000276043.5,UHRF1,chr19,+,I11.1,4944451,4945860|25|7.29|7|intron MULTI-MSMS UPN48_class_I_Rep_3 7 578.3060302734375 2 578.305864 1154.59717 0.5409 0.0003128 -0.2556 -0.00014782 0.28529 0.00016499 578.30567089927 70.428 0.56555 73.947 73.841 74.407 3.5185 121 59 3 0 0 0 0.0065234 3 16293 16293;16331;16349 74.2 32.36 1 547200 44380 5830 28071 28083 51075;51076;51077 51075 0.02605994786199517 TLFFVSSENK 10 Unmodified _TLFFVSSENK_ 0 0 0 REV__MER89-int_dup174|chr6:2347497-2347776:+|1.3497471436805837|0.0756065054679938|4.16|151.0|14|2|anti-sense REV__MER89-int_dup174|chr6:2347497-2347776:+|1.3497471436805837|0.0756065054679938|4.16|151.0|14|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 586.3045654296875 2 586.303321 1170.59209 0.41274 0.00024199 0.17373 0.00010186 0.58647 0.00034385 586.3034425909217 70.59 0.23059 73.873 73.731 73.962 3.2828 41 21 3 0 0 0 0.53004 1 17211 17211 8.1555 0.54658 1 196210 + 44381 31573 28072 28084 51078 51078 0.013616909235679486 TLFLIIQT 8 Unmodified _TLFLIIQT_ 0 0 0 REV__L1MC4_dup11829|chr8:51876279-51877066:+|1.5737860192961095|0.0303401981239673|5.7|151.0|31|1|anti-sense REV__L1MC4_dup11829|chr8:51876279-51877066:+|1.5737860192961095|0.0303401981239673|5.7|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 474.7909240722656 2 474.791861 947.569169 0.21944 0.00010419 -1.7866 -0.00084829 -1.5672 -0.0007441 474.79100570399663 109.91 0.034935 113.58 113.56 113.6 3.6715 4 2 2 0 0 0 0.82752 1 26174 26174 2.5775 0 1 2507200 + 44382 26805 28073 28085 51079 51079 0.09328716596746744 TLFLSNYQP 9 Unmodified _TLFLSNYQP_ 0 0 0 nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160.15,MIER1,chr1,+,I2.1,66926243,66928886|23|4.39|3|intron;nc|ENSG00000198160|Q8N108-20|MIER1;ENSG00000198160.15,MIER1,chr1,+,I2.1,66926243,66928886|23|4.39|2|intron;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1 nc|ENSG00000198160|Q8N108-13|MIER1 nc|ENSG00000198160|Q8N108-13|MIER1 MULTI-MSMS UPN48_class_I_Rep_1 5 541.7793579101562 2 541.779482 1081.54441 0.45113 0.00024441 -0.15422 -8.3553E-05 0.29691 0.00016086 541.7792880663577 67.953 0.45505 71.405 71.203 71.658 3.4517 54 36 2 0 0 0 0.46434 1 15636 15636 4.3292 0 1 106900 44383 5415 28074 28086 51080 51080 0.006900367233583893 TLFLVPHR 8 Unmodified _TLFLVPHR_ 0 0 0 REV__L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|44|1|anti-sense REV__L1MB3_dup10436|chr10:87909603-87910426:-|1.7570193018721978|0.0244861797777167|6.17|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_1 5 491.79644775390625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.736 1 68.19 67.69 68.69 3.4541 0 0 0 0.40625 1 14678 14678 2.3027 0 1 + 44384 25795 28075 28087 51081 51081 0.08446074267988024 TLFPEKQIY 9 Unmodified _TLFPEKQIY_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MSMS UPN46_class_I_Rep_3 1 569.809814453125 2 569.810782 1137.60701 NaN NaN NaN NaN NaN NaN NaN 58.623 1 58.623 58.123 59.123 0 0 0 0 0.20399 1 12914 12914 16.149 2.2431 1 44385 3951 28076 28088 51082 51082 0.04371182791578576 TLFRSRSKRRH 11 Unmodified _TLFRSRSKRRH_ 0 0 0 ENSG00000173578|ENST00000309285|XCR1 ENSG00000173578|ENST00000309285|XCR1 ENSG00000173578|ENST00000309285|XCR1 MULTI-SECPEP UPN46_class_I_Rep_3 1 481.28387451171875 3 481.951642 1442.8331 0.2716 0.0001309 0.91054 0.00043884 1.1821 0.00056974 481.95205180060015 96.737 0.070343 96.737 96.694 96.764 0 6 5 2 0 0 0 22.551 1 23517 23517 0.094841 0 1 422670 44386 4636 28077 28089 51083 51083 0.1293936447402757 TLFVEKTIL 9 Unmodified _TLFVEKTIL_ 0 0 0 L1MD_dup507|chr1:211806679-211807893:+|2.82380037900399|0.0722976641261303|5.29|151.0|72|2|anti-sense L1MD_dup507|chr1:211806679-211807893:+|2.82380037900399|0.0722976641261303|5.29|151.0|72|2|anti-sense L1MD_dup507|chr1:211806679-211807893:+|2.82380037900399|0.0722976641261303|5.29|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_3 4 532.3238525390625 2 532.323525 1062.6325 NaN NaN NaN NaN NaN NaN NaN 66.261 1 69.447 68.947 69.947 3.1853 0 0 0 0.32573 1 15969 15969 9.3831 0 1 44387 11882 28078 28090 51084 51084 0.10368657314006668 TLGAKNVKR 9 Unmodified _TLGAKNVKR_ 0 0 0 REV__L1M5_dup33188|chrX:154685543-154685966:+|1.3001610375580042|0.0481867736562936|4.75|150.0|7|2|sense REV__L1M5_dup33188|chrX:154685543-154685966:+|1.3001610375580042|0.0481867736562936|4.75|150.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 493.810791015625 2 493.808908 985.603263 NaN NaN NaN NaN NaN NaN NaN 47.328 1 47.328 46.828 47.828 0 0 0 0 0.38916 1 9777 9777 3.2813 0.70383 1 + 44388 24655 28079 28091 51085 51085 0.10988557808377664 TLGHEQFRLK 10 Unmodified _TLGHEQFRLK_ 0 0 0 ENSG00000188585|ENST00000623247|CLEC20A ENSG00000188585|ENST00000623247|CLEC20A ENSG00000188585|ENST00000623247|CLEC20A MULTI-MSMS UPN47_class_I_Rep_3 4 410.2314147949219 3 410.231412 1227.67241 -0.61151 -0.00025086 1.4518 0.00059555 0.84024 0.00034469 410.23183516479986 104.73 0.10446 108.25 108.2 108.3 3.5205 28 15 3 0 0 0 0.55335 1 25663 25663 5.0475 0.3316 1 17876000 44389 5240 28080 28092 51086 51086 0.0676759703726475 TLGLCSCWHL 10 Unmodified _TLGLCSCWHL_ 0 0 0 MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|52|3|sense MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|52|3|sense MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|52|3|sense MSMS UPN46_class_I_Rep_3 1 566.76708984375 2 566.767537 1131.52052 NaN NaN NaN NaN NaN NaN NaN 38.18 1 38.18 37.68 38.68 0 0 0 0 0.53105 1 7246 7246 3.5965 1.2938 1 44390 16099 28081 28093 51087 51087 -0.03997843306319737 TLGLLGLCRS 10 Unmodified _TLGLLGLCRS_ 0 0 0 REV__L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|81|2|anti-sense REV__L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|81|2|anti-sense MSMS UPN48_class_I_Rep_1 5 516.7971801757812 2 516.797152 1031.57975 NaN NaN NaN NaN NaN NaN NaN 31.4 1 34.935 34.435 35.435 3.5342 0 0 0 0.53105 1 4640 4640 1.4819 0 1 + 44391 26710 28082 28094 51088 51088 0.06522375979557182 TLGPVSRSY 9 Unmodified _TLGPVSRSY_ 0 0 0 nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;nc|ENSG00000104972|Q8NHL6-5|LILRB1;ENSG00000104974|ENST00000251372|LILRA1;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1 nc|ENSG00000131042|Q8N423-4|LILRB2 nc|ENSG00000131042|Q8N423-4|LILRB2 MULTI-MSMS UPN46_class_I_Rep_3 1 490.26385498046875 2 490.263999 978.513445 0.21235 0.00010411 0.40973 0.00020088 0.62208 0.00030498 490.26421466576534 38.049 0.51946 38.049 37.852 38.372 0 66 54 2 0 0 0 0.36392 1 7219 7219 10.074 0 1 166320 44392 2695 28083 28095 51089 51089 0.02332883409144415 TLGRQLII 8 Unmodified _TLGRQLII_ 0 0 0 HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|36|1|sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|36|1|sense HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|36|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.29510498046875 2 457.295102 912.575651 0.09829 4.4948E-05 -0.015247 -6.9722E-06 0.083043 3.7975E-05 457.29502976119363 57.101 0.81625 60.644 60.356 61.172 3.5427 145 78 2 0 0 0 0.82752 1 12272 12272 30.637 0 1 524520 44393 8036 28084 28096 51090 51090 0.11586654548136721 TLGSLRMVDVW 11 Unmodified _TLGSLRMVDVW_ 0 0 0 MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|17|1|anti-sense MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|17|1|anti-sense MER57A1_dup459|chr8:653239-653668:+|1.355685118729964|0.2229526723532379|2.6|151.0|17|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 638.8406372070312 2 638.839548 1275.66454 0.67008 0.00042807 -0.18177 -0.00011612 0.4883 0.00031195 638.8393682349111 61.85 0.56657 61.85 61.523 62.09 0 102 52 3 0 0 0 0.37961 1 13715 13715 10.8 0.64894 1 520070 44394 16124 28085 28097 51091 51091 0.0377370172548126 TLGTDPFV 8 Unmodified _TLGTDPFV_ 0 0 0 L1ME1_dup12081|chr6:108618411-108619105:-|1.0509220512475597|0.0268497068226547|5.29|151.0|42|2|anti-sense L1ME1_dup12081|chr6:108618411-108619105:-|1.0509220512475597|0.0268497068226547|5.29|151.0|42|2|anti-sense L1ME1_dup12081|chr6:108618411-108619105:-|1.0509220512475597|0.0268497068226547|5.29|151.0|42|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 425.75244140625 2 425.221268 848.427984 0.028913 1.2295E-05 0.95805 0.00040738 0.98696 0.00041968 425.22163120929434 79.36 0.56734 82.805 82.552 83.119 3.4456 85 51 2 0 0 0 0.72333 1 19805 19805 5.2307 0 1 159300 44395 12192 28086 28098 51092 51092 -0.0022928177651238 TLGVWMLF 8 Unmodified _TLGVWMLF_ 0 0 0 REV__MLT2B4_dup2673|chrX:53150801-53151306:-|1.7065186501696397|0.1567270960970674|3.44|151.0|9|2|sense REV__MLT2B4_dup2673|chrX:53150801-53151306:-|1.7065186501696397|0.1567270960970674|3.44|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 483.6002197265625 2 483.759507 965.50446 NaN NaN NaN NaN NaN NaN NaN 56.79 1 56.79 56.29 57.29 0 0 0 0 0.40364 1 12406 12406 5.7604 0.52976 1 + 44396 31827 28087 28099 51093 51093 0.020328185191260673 TLHGKLLLLL 10 Unmodified _TLHGKLLLLL_ 0 0 0 REV__Charlie1b_dup348|chr2:47872624-47873037:+|1.0308998041419235|0.006897697733574|7.22|151.0|14|3|sense REV__Charlie1b_dup348|chr2:47872624-47873037:+|1.0308998041419235|0.006897697733574|7.22|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 560.877197265625 2 560.876259 1119.73797 NaN NaN NaN NaN NaN NaN NaN 94.892 1 94.892 94.392 95.392 0 0 0 0 0.53105 1 23025 23025 0.35063 0 1 + 44397 17358 28088 28100 51094 51094 0.18288618230280917 TLHGRAIL 8 Unmodified _TLHGRAIL_ 0 0 0 ENST00000565384.1_1_16:27236480-27241947:-|nuORF;ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENST00000565384.1_1_16:27236480-27241947:-|nuORF ENST00000565384.1_1_16:27236480-27241947:-|nuORF MSMS UPN47_class_I_Rep_1 2 440.77166748046875 2 440.771794 879.529036 NaN NaN NaN NaN NaN NaN NaN 27.848 1 31.614 31.114 32.114 3.7662 0 0 0 0.39996 1 4206 4206 7.9102 0 1 44398 4409 28089 28101 51095 51095 0.08445214716834926 TLHGRAIL 8 Unmodified _TLHGRAIL_ 0 0 0 ENST00000565384.1_1_16:27236480-27241947:-|nuORF;ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENST00000565384.1_1_16:27236480-27241947:-|nuORF ENST00000565384.1_1_16:27236480-27241947:-|nuORF MSMS UPN47_class_I_Rep_1 2 440.7712097167969 2 440.771794 879.529036 NaN NaN NaN NaN NaN NaN NaN 28.057 1 31.823 31.323 32.323 3.7662 0 0 0 0.40625 1 4266 4266 2.3027 0 1 44399 4409 28089 28101 51096 51096 0.08445214716834926 TLHHSIAY 8 Unmodified _TLHHSIAY_ 0 0 0 REV__ENST00000427650.2_1_9:69386004-69400453:+|nuORF REV__ENST00000427650.2_1_9:69386004-69400453:+|nuORF MSMS UPN48_class_I_Rep_1 5 470.77252197265625 2 471.245609 940.476666 NaN NaN NaN NaN NaN NaN NaN 75.132 1 78.622 78.122 79.122 3.49 0 0 0 0.40625 1 17785 17785 2.3027 0 1 + 44400 21396 28090 28102 51097 51097 0.004046315832169967 TLHKKEIL 8 Unmodified _TLHKKEIL_ 0 0 0 L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|133|3|sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|133|3|sense L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|133|3|sense MSMS UPN48_class_I_Rep_1 5 491.30828857421875 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 109.79 1 113.42 112.92 113.92 3.6326 0 0 0 0.40472 1 26665 26665 4.3292 0 1 44401 9323 28091 28103 51098 51098 0.11078923719617251 TLHKVYAF 8 Unmodified _TLHKVYAF_ 0 0 0 REV__L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|146|3|anti-sense REV__L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|146|3|anti-sense MSMS UPN47_class_I_Rep_1 2 489.734619140625 2 489.774003 977.533452 NaN NaN NaN NaN NaN NaN NaN 24.352 1 28.082 27.582 28.582 3.7298 0 0 0 0.40738 1 3167 3167 0.79363 0 1 + 44402 26935 28092 28104 51099 51099 0.04378679139745145 TLHLKAKT 8 Unmodified _TLHLKAKT_ 0 0 0 REV__AluSp_dup34096|chr12:111439140-111439449:-|1.215475441706395|0.0715895714159932|4.09|150.0|8|2|sense REV__AluSp_dup34096|chr12:111439140-111439449:-|1.215475441706395|0.0715895714159932|4.09|150.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 456.2882995605469 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 24.287 1 28.016 27.516 28.516 3.7298 0 0 0 0.40746 1 3148 3148 0.69038 0 1 + 44403 17109 28093 28105 51100 51100 0.10114368031076992 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.7842712402344 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 113.23 1 113.23 112.73 113.73 0 0 0 0 0.40798 1 27965 27965 0 0 1 + 44404 21659 28094 28106 51101 51101 0.1528662271043686 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN47_class_I_Rep_2 3 497.3320617675781 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 116.37 1 119.87 119.37 120.37 3.4965 0 0 0 0.40798 1 28409 28409 0 0 1 + 44405 21659 28094 28106 51102 51102 0.1528662271043686 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN47_class_I_Rep_2 3 497.3318786621094 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 116.84 1 120.33 119.83 120.83 3.4891 0 0 0 0.40798 1 28537 28537 0 0 1 + 44406 21659 28094 28106 51103 51103 0.1528662271043686 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN47_class_I_Rep_3 4 497.3313293457031 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 119.59 1 123.01 122.51 123.51 3.4157 0 0 0 0.40798 1 29541 29541 0 0 1 + 44407 21659 28094 28106 51104 51104 0.1528662271043686 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.3321838378906 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.93 114.43 115.43 3.6326 0 0 0 0.40798 1 27002 27002 0 0 1 + 44408 21659 28094 28106 51105 51105 0.1528662271043686 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN48_class_I_Rep_2 6 497.3322448730469 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 112.3 1 115.96 115.46 116.46 3.6648 0 0 0 0.40798 1 26748 26748 0 0 1 + 44409 21659 28094 28106 51106 51106 0.1528662271043686 TLHLKLRL 8 Unmodified _TLHLKLRL_ 0 0 0 REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF REV__ENST00000297185.7_1_5:137893602-137893653:-|nuORF MSMS UPN48_class_I_Rep_2 6 497.3320007324219 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 113.44 1 117.11 116.61 117.61 3.663 0 0 0 0.40798 1 27076 27076 0 0 1 + 44410 21659 28094 28106 51107 51107 0.1528662271043686 TLHLVLRL 8 Unmodified _TLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 482.81878662109375 2 482.818744 963.622936 0.2376 0.00011472 -0.13911 -6.7163E-05 0.098499 4.7557E-05 482.8186238132974 57.849 0.77672 61.343 60.983 61.759 3.4942 91 55 2 0 0 0 0.82752 4 12525 12525;12564;12609;12613 49.933 0 1 212840 44411 3335 28095 28107 51108;51109;51110;51111 51108 0.13966933819108363 TLHLVLRL 8 Unmodified _TLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MSMS UPN48_class_I_Rep_1 5 482.8183898925781 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 58.334 1 61.821 61.321 62.321 3.487 0 0 0 0.27177 1 12719 12719 36.127 0 1 44412 3335 28095 28107 51112 51112 0.13966933819108363 TLHLVLRL 8 Unmodified _TLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 482.81890869140625 2 482.818744 963.622936 0.34044 0.00016437 -0.16241 -7.8412E-05 0.17804 8.5961E-05 482.81852498422427 57.776 0.96015 61.291 60.984 61.944 3.5142 110 64 3 0 0 0 0.82752 4 12487 12487;12524;12567;12612 56.177 0 1 353390 44413 3335 28095 28107 51113;51114;51115;51116 51113 0.13966933819108363 TLHLVLRL 8 Unmodified _TLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MSMS UPN48_class_I_Rep_3 7 482.8185119628906 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 57.601 1 61.132 60.632 61.632 3.5317 0 0 0 0.023165 1 12406 12406 56.177 0 1 44414 3335 28095 28107 51117 51117 0.13966933819108363 TLHLVLRL 8 Unmodified _TLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MSMS UPN48_class_I_Rep_3 7 482.8186340332031 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 57.731 1 61.263 60.763 61.763 3.5317 0 0 0 0.10209 1 12446 12446 49.933 0 1 44415 3335 28095 28107 51118 51118 0.13966933819108363 TLHLVLRL 8 Unmodified _TLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MSMS UPN48_class_I_Rep_3 7 482.8183288574219 2 482.818744 963.622936 NaN NaN NaN NaN NaN NaN NaN 57.863 1 61.394 60.894 61.894 3.5317 0 0 0 0.25009 1 12487 12487 41.84 0 1 44416 3335 28095 28107 51119 51119 0.13966933819108363 TLHPPLIAQA 10 Unmodified _TLHPPLIAQA_ 0 0 0 REV__AluJr_dup23877|chr5:137967621-137967910:+|1.0649767060654798|0.0365082943381905|4.87|151.0|22|3|anti-sense REV__AluJr_dup23877|chr5:137967621-137967910:+|1.0649767060654798|0.0365082943381905|4.87|151.0|22|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 530.8106689453125 2 530.811116 1059.60768 0.32592 0.000173 0.068668 3.645E-05 0.39459 0.00020945 530.8112028001099 56.482 0.48786 59.782 59.527 60.015 3.3009 43 28 3 0 0 0 0.84575 1 13000 13000 2.9952 0.69251 1 180410 + 44417 17035 28096 28108 51120 51120 0.0802602223127451 TLHPQKKP 8 Unmodified _TLHPQKKP_ 0 0 0 L1MB8_dup11954|chr12:111505227-111506387:+|1.9873724048774852|0.049716516793693|5.32|151.0|67|3|anti-sense L1MB8_dup11954|chr12:111505227-111506387:+|1.9873724048774852|0.049716516793693|5.32|151.0|67|3|anti-sense L1MB8_dup11954|chr12:111505227-111506387:+|1.9873724048774852|0.049716516793693|5.32|151.0|67|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.2821960449219 2 474.784902 947.55525 0.039497 1.8753E-05 -1.8671 -0.00088648 -1.8276 -0.00086772 474.78381593702875 32.206 0.092659 32.206 32.126 32.219 0 10 6 2 0 0 0 0.72333 1 5483 5483 5.2307 0 1 103350 44418 10917 28097 28109 51121 51121 0.07937483888326824 TLHRFVIP 8 Unmodified _TLHRFVIP_ 0 0 0 L1PA8_dup7810|chr20:34611677-34612541:+|1.025267849900009|0.0136928227736559|6.23|151.0|24|2|sense L1PA8_dup7810|chr20:34611677-34612541:+|1.025267849900009|0.0136928227736559|6.23|151.0|24|2|sense L1PA8_dup7810|chr20:34611677-34612541:+|1.025267849900009|0.0136928227736559|6.23|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 491.776123046875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 64.257 1 67.714 67.214 68.214 3.4578 0 0 0 0.40604 1 14532 14532 2.5775 0 1 44419 14962 28098 28110 51122 51122 0.08446074267999393 TLHTKQLCCY 10 Unmodified _TLHTKQLCCY_ 0 0 0 REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|114|3|sense REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|114|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 605.2919921875 2 605.291376 1208.5682 0.5568 0.00033703 -0.097619 -5.9088E-05 0.45918 0.00027794 605.2912100188239 59.233 0.61472 62.714 62.31 62.925 3.4801 66 38 2 0 0 0 0.54822 3 12921 12921;12969;13010 5.7319 4.0792 1 181080 + 44420 30293 28099 28111 51123;51124;51125 51123 -0.02774189106094127 TLHTKQLCCY 10 Unmodified _TLHTKQLCCY_ 0 0 0 REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|114|3|sense REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|114|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 605.2911987304688 2 605.291376 1208.5682 0.57194 0.00034619 0.0087223 5.2796E-06 0.58067 0.00035147 605.2912454801016 59.171 0.57641 62.669 62.322 62.899 3.4987 69 38 2 0 0 0 0.54822 3 12903 12903;12946;12985 5.7319 4.0792 1 236900 + 44421 30293 28099 28111 51126;51127;51128 51126 -0.02774189106094127 TLHTKQLCCY 10 Unmodified _TLHTKQLCCY_ 0 0 0 REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|114|3|sense REV__L1PB1_dup10136|chr12:62418286-62422546:+|2.1077533361935274|0.0056985214895652|8.53|151.0|114|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 605.2913818359375 2 605.291376 1208.5682 0.5073 0.00030706 0.10604 6.4187E-05 0.61334 0.00037125 605.2913423524112 59 0.64907 62.523 62.176 62.825 3.5231 86 43 3 0 0 0 0.54822 2 12802 12802;12889 5.7319 4.0792 1 203190 + 44422 30293 28099 28111 51129;51130 51129 -0.02774189106094127 TLHVLSGVQFL 11 Unmodified _TLHVLSGVQFL_ 0 0 0 REV__L1MC3_dup41|chr1:10087462-10088185:-|1.1725192860235871|0.0169453747534405|6.11|150.0|50|3|anti-sense REV__L1MC3_dup41|chr1:10087462-10088185:-|1.1725192860235871|0.0169453747534405|6.11|150.0|50|3|anti-sense MSMS UPN46_class_I_Rep_3 1 405.4856262207031 3 405.236163 1212.68666 NaN NaN NaN NaN NaN NaN NaN 38.05 1 38.05 37.55 38.55 0 0 0 0 0.38417 1 7213 7213 2.6312 0.13275 1 + 44423 26742 28100 28112 51131 51131 0.08882249465568748 TLHYNLRL 8 Unmodified _TLHYNLRL_ 0 0 0 L1ME3B_dup1316|chr3:11444022-11444300:-|1.02901393569361|0.0185276294900068|5.8|151.0|1|1|sense L1ME3B_dup1316|chr3:11444022-11444300:-|1.02901393569361|0.0185276294900068|5.8|151.0|1|1|sense L1ME3B_dup1316|chr3:11444022-11444300:-|1.02901393569361|0.0185276294900068|5.8|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 515.2952880859375 2 515.295633 1028.57671 NaN NaN NaN NaN NaN NaN NaN 42.395 1 46.036 45.536 46.536 3.6415 0 0 0 0.40404 1 7764 7764 5.2307 0 1 44424 12696 28101 28113 51132 51132 0.06356868917009706 TLIDKKII 8 Unmodified _TLIDKKII_ 0 0 0 REV__L1M5_dup7063|chr2:148056768-148057579:-|1.160180604486|0.1992138070883599|2.54|151.0|25|3|sense REV__L1M5_dup7063|chr2:148056768-148057579:-|1.160180604486|0.1992138070883599|2.54|151.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.3126525878906 2 472.312961 942.611368 0.018446 8.7121E-06 -0.47144 -0.00022267 -0.453 -0.00021396 472.3126238811317 66.595 0.19865 69.854 69.773 69.972 3.2588 27 16 2 0 0 0 0.82752 1 15992 15992 20.454 0 1 104170 + 44425 24706 28102 28114 51133 51133 0.13776692005137647 TLIDLPGITR 10 Unmodified _TLIDLPGITR_ 0 0 0 nc|ENSG00000157601|P20591-2|MX1;ENSG00000157601|ENST00000398598|MX1 nc|ENSG00000157601|P20591-2|MX1 nc|ENSG00000157601|P20591-2|MX1 MULTI-MSMS UPN48_class_I_Rep_1 5 549.8294677734375 2 549.829506 1097.64446 0.5901 0.00032446 0.029045 1.597E-05 0.61915 0.00034043 549.8294571378195 64.243 0.61784 67.701 67.338 67.956 3.4578 67 44 2 0 0 0 0.31534 2 14490 14490;14569 28.495 0 1 223330 44426 3771 28103 28115 51134;51135 51134 0.09954274057167822 TLIDLPGITR 10 Unmodified _TLIDLPGITR_ 0 0 0 nc|ENSG00000157601|P20591-2|MX1;ENSG00000157601|ENST00000398598|MX1 nc|ENSG00000157601|P20591-2|MX1 nc|ENSG00000157601|P20591-2|MX1 MULTI-MSMS UPN48_class_I_Rep_2 6 549.829833984375 2 549.829506 1097.64446 0.52813 0.00029038 0.059632 3.2787E-05 0.58776 0.00032317 549.8294754864544 64.123 0.51259 67.598 67.253 67.766 3.4743 68 37 2 0 0 0 0.3081 2 14479 14437;14479 30.703 0 1 280590 44427 3771 28103 28115 51136;51137 51137 0.09954274057167822 TLIDLPGITR 10 Unmodified _TLIDLPGITR_ 0 0 0 nc|ENSG00000157601|P20591-2|MX1;ENSG00000157601|ENST00000398598|MX1 nc|ENSG00000157601|P20591-2|MX1 nc|ENSG00000157601|P20591-2|MX1 MULTI-MSMS UPN48_class_I_Rep_3 7 549.8296508789062 2 549.829506 1097.64446 0.44419 0.00024423 0.24083 0.00013241 0.68501 0.00037664 549.829484215775 63.867 0.67064 67.375 67.127 67.798 3.5083 105 53 3 0 0 0 0.31951 2 14317 14317;14359 27.223 0 1 271130 44428 3771 28103 28115 51138;51139 51138 0.09954274057167822 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN46_class_I_Rep_3 1 486.7843933105469 2 486.784233 971.553913 0.28506 0.00013876 -0.089764 -4.3696E-05 0.19529 9.5066E-05 486.7841336742416 99.441 0.12242 99.441 99.392 99.515 0 20 13 2 0 0 0 0.12799 1 24240 24240 28.487 5.3384 1 231340 44429 1544 28104 28116 51140 51140 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN46_class_I_Rep_3 1 486.7843322753906 2 486.784233 971.553913 NaN NaN NaN NaN NaN NaN NaN 99.376 1 99.376 98.876 99.876 0 0 0 0 0.089203 1 24207 24207 26.884 9.9414 1 44430 1544 28104 28116 51141 51141 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN47_class_I_Rep_1 2 486.7845458984375 2 486.784233 971.553913 0.25943 0.00012629 -0.15393 -7.4929E-05 0.1055 5.1357E-05 486.78416032287095 94.186 0.99638 97.937 97.586 98.583 3.7508 205 135 2 0 0 0 0.0077059 9 23427 23344;23369;23398;23427;23452;23478;23488;23528;23541 96.285 56.327 1 286980 44431 1544 28104 28116 51142;51143;51144;51145;51146;51147;51148;51149;51150 51145 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN47_class_I_Rep_1 2 486.7844543457031 2 486.784233 971.553913 NaN NaN NaN NaN NaN NaN NaN 95.127 1 98.878 98.378 99.378 3.7508 0 0 0 0.29868 1 23618 23618 10.824 3.5347 1 44432 1544 28104 28116 51151 51151 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN47_class_I_Rep_1 2 486.7842712402344 2 486.784233 971.553913 NaN NaN NaN NaN NaN NaN NaN 95.14 1 98.891 98.391 99.391 3.7508 0 0 0 0.19137 1 23622 23622 16.942 0 1 44433 1544 28104 28116 51152 51152 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN47_class_I_Rep_2 3 486.7843322753906 2 486.784233 971.553913 0.4393 0.00021384 -0.44733 -0.00021775 -0.0080296 -3.9087E-06 486.7840653035721 94.248 0.66548 97.72 97.357 98.023 3.472 139 93 3 0 0 0 0.0077059 4 23249 23191;23215;23249;23283 96.285 56.327 1 285040 44434 1544 28104 28116 51153;51154;51155;51156 51155 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN47_class_I_Rep_2 3 486.7847595214844 2 486.784233 971.553913 NaN NaN NaN NaN NaN NaN NaN 94.616 1 98.088 97.588 98.588 3.472 0 0 0 0.11494 1 23312 23312 21.747 4.8044 1 44435 1544 28104 28116 51157 51157 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS UPN47_class_I_Rep_2 3 486.7842712402344 2 486.784233 971.553913 NaN NaN NaN NaN NaN NaN NaN 94.905 1 98.377 97.877 98.877 3.472 0 0 0 0.28335 1 23376 23376 11.64 0 1 44436 1544 28104 28116 51158 51158 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN47_class_I_Rep_3 4 486.7840576171875 2 486.784233 971.553913 0.21853 0.00010638 -0.14801 -7.2048E-05 0.070517 3.4327E-05 486.7841374252643 94.409 0.66657 97.816 97.474 98.141 3.4068 144 93 3 0 0 0 0.006343 5 23462 23434;23462;23488;23515;23542 74.929 44.704 1 599900 44437 1544 28104 28116 51159;51160;51161;51162;51163 51160 0.06699805008918247 TLIEILASR 9 Unmodified _TLIEILASR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MSMS UPN48_class_I_Rep_1 5 508.31134033203125 2 508.310949 1014.60735 NaN NaN NaN NaN NaN NaN NaN 62.469 1 65.931 65.431 66.431 3.4625 0 0 0 0.02789 1 13983 13983 47.732 9.1172 1 44438 2883 28105 28117 51164 51164 0.1006260251143658 TLIEILASR 9 Unmodified _TLIEILASR_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000489109.1_1_9:75775238-75780181:+|nuORF;ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MULTI-MSMS UPN48_class_I_Rep_3 7 508.31036376953125 2 508.310949 1014.60735 0.28403 0.00014437 -0.20287 -0.00010312 0.081159 4.1254E-05 508.3108048315817 62.219 0.3117 65.73 65.57 65.882 3.5104 37 28 2 0 0 0 0.15661 1 13845 13845 24.882 7.4389 1 90402 44439 2883 28105 28117 51165 51165 0.1006260251143658 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.31280517578125 2 472.312961 942.611368 0.080834 3.8179E-05 -0.29467 -0.00013918 -0.21384 -0.000101 472.3127133513706 65.55 0.70091 68.905 68.562 69.263 3.3557 86 37 3 0 0 0 0.079935 3 15663 15619;15663;15706 38.615 8.7742 1 247970 44440 4253 28106 28118 51166;51167;51168 51167 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.8143005371094 2 472.312961 942.611368 0.075934 3.5865E-05 -0.5725 -0.0002704 -0.49656 -0.00023453 472.31261791003044 66.085 0.36971 69.442 69.251 69.621 3.3576 43 25 2 0 0 0 0.11355 1 15803 15803 31.268 0 1 111140 44441 4253 28106 28118 51169 51169 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS UPN47_class_I_Rep_1 2 472.312744140625 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 66.334 1 69.692 69.192 70.192 3.3576 0 0 0 0.20399 1 15883 15883 16.149 0 1 44442 4253 28106 28118 51170 51170 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS UPN47_class_I_Rep_1 2 472.31317138671875 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 66.731 1 70.089 69.589 70.589 3.3576 0 0 0 0.27207 1 16004 16004 12.241 0 1 44443 4253 28106 28118 51171 51171 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.3128356933594 2 472.312961 942.611368 0.013707 6.474E-06 -0.30959 -0.00014622 -0.29588 -0.00013975 472.31272718181333 65.999 0.82065 69.258 68.805 69.626 3.2588 80 47 3 0 0 0 0.079935 3 15750 15750;15798;15925 38.615 3.6827 1 272120 44444 4253 28106 28118 51172;51173;51174 51172 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.3125 2 472.312961 942.611368 0.016465 7.7765E-06 -0.37006 -0.00017479 -0.3536 -0.00016701 472.3127618545067 66.441 0.17922 69.7 69.605 69.785 3.2588 17 10 2 0 0 0 0.26468 1 15949 15949 16.149 0 1 134790 44445 4253 28106 28118 51175 51175 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 472.3131103515625 2 472.312961 942.611368 -0.0074142 -3.5018E-06 -0.056909 -2.6879E-05 -0.064323 -3.0381E-05 472.31282014766344 65.918 1.0175 69.104 68.801 69.819 3.1853 120 69 3 0 0 0 0.0203 4 15897 15808;15853;15897;15943 63.227 19.455 1 251340 44446 4253 28106 28118 51176;51177;51178;51179 51178 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS UPN47_class_I_Rep_3 4 472.3128356933594 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 66.298 1 69.483 68.983 69.983 3.1853 0 0 0 0.092202 1 15981 15981 26.268 0 1 44447 4253 28106 28118 51180 51180 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS UPN47_class_I_Rep_3 4 472.3128967285156 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 66.448 1 69.633 69.133 70.133 3.1853 0 0 0 0.15288 1 16027 16027 19.362 0 1 44448 4253 28106 28118 51181 51181 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS UPN47_class_I_Rep_3 4 472.3125 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 66.643 1 69.828 69.328 70.328 3.1853 0 0 0 0.20399 1 16086 16086 16.149 0 1 44449 4253 28106 28118 51182 51182 0.13776692005137647 TLIGLSIKV 9 Unmodified _TLIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS UPN47_class_I_Rep_3 4 472.31256103515625 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 66.882 1 70.073 69.573 70.573 3.1914 0 0 0 0.11827 1 16160 16160 21.537 0 1 44450 4253 28106 28118 51183 51183 0.13776692005137647 TLIHLIRK 8 Unmodified _TLIHLIRK_ 0 0 0 REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|87|2|sense REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|87|2|sense MSMS UPN47_class_I_Rep_3 4 497.3320617675781 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 118.73 1 122.16 121.66 122.66 3.4238 0 0 0 0.40746 1 29294 29294 0.69038 0 1 + 44451 30599 28107 28119 51184 51184 0.15286622710459596 TLIHLIRK 8 Unmodified _TLIHLIRK_ 0 0 0 REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|87|2|sense REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|87|2|sense MSMS UPN48_class_I_Rep_2 6 497.332275390625 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 111.12 1 114.79 114.29 115.29 3.669 0 0 0 0.40746 1 26429 26429 0.69038 0 1 + 44452 30599 28107 28119 51185 51185 0.15286622710459596 TLIHLTLT 8 Unmodified _TLIHLTLT_ 0 0 0 L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|98|3|anti-sense L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|98|3|anti-sense L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|98|3|anti-sense MSMS UPN47_class_I_Rep_3 4 456.28070068359375 2 456.28166 910.548768 NaN NaN NaN NaN NaN NaN NaN 111.66 1 115.18 114.68 115.68 3.5207 0 0 0 0.40746 1 27415 27415 0.69038 0 1 44453 10357 28108 28120 51186 51186 0.08991545936930834 TLIKVNPY 8 Unmodified _TLIKVNPY_ 0 0 0 L1ME3Cz_dup11952|chr21:37074856-37075596:-|2.1284373492377595|0.2497759857734221|3.09|151.0|49|3|anti-sense L1ME3Cz_dup11952|chr21:37074856-37075596:-|2.1284373492377595|0.2497759857734221|3.09|151.0|49|3|anti-sense L1ME3Cz_dup11952|chr21:37074856-37075596:-|2.1284373492377595|0.2497759857734221|3.09|151.0|49|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2822265625 2 474.28166 946.548768 0.021495 1.0195E-05 1.5155 0.00071876 1.537 0.00072895 474.2822400479063 31.386 0.17208 31.386 31.338 31.51 0 23 13 3 0 0 0 0.82752 1 5242 5242 5.7604 0 1 772450 44454 12765 28109 28121 51187 51187 0.07335545936950894 TLILKAKL 8 Unmodified _TLILKAKL_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000488985.1_1_1:26881695-26882652:+|nuORF nc|ENSG00000117676|Q15418-3|RPS6KA1 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS UPN47_class_I_Rep_1 2 450.31781005859375 2 450.318046 898.621539 -0.33447 -0.00015062 -0.27958 -0.0001259 -0.61405 -0.00027652 450.3179862179586 40.991 0.34227 44.663 44.592 44.934 3.6719 41 27 2 0 0 0 0.82752 1 8206 8206 15.847 0 1 58301 44455 2228 28110 28122 51188 51188 0.1681729973035999 TLILKAKL 8 Unmodified _TLILKAKL_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000488985.1_1_1:26881695-26882652:+|nuORF nc|ENSG00000117676|Q15418-3|RPS6KA1 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.3171081542969 2 450.318046 898.621539 -0.5566 -0.00025065 -0.31107 -0.00014008 -0.86767 -0.00039073 450.31793962801873 41.393 0.24198 44.758 44.638 44.88 3.3655 26 19 2 0 0 0 0.82752 1 8351 8351 13.508 0 1 52766 44456 2228 28110 28122 51189 51189 0.1681729973035999 TLILMFAWF 9 Unmodified _TLILMFAWF_ 0 0 0 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 MULTI-SECPEP UPN47_class_I_Rep_1 2 570.730712890625 2 571.309364 1140.60417 0.34301 0.00019597 2.1509 0.0012288 2.4939 0.0014248 571.3104168683395 64.957 0.30449 68.313 68.101 68.405 3.3557 32 22 2 0 0 0 0.11112 1 15480 15480 13.508 0 1 76983 44457 3439 28111 28123 51190 51190 0.03949636133052081 TLIMRVPL 8 Unmodified _TLIMRVPL_ 0 0 0 REV__L1PA5_dup1373|chr2:171349853-171356109:-|2.617390769144865|0.0560142028847037|5.55|151.0|262|2|anti-sense REV__L1PA5_dup1373|chr2:171349853-171356109:-|2.617390769144865|0.0560142028847037|5.55|151.0|262|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 471.79571533203125 2 471.793881 941.573209 0.018283 8.6259E-06 3.9868 0.001881 4.0051 0.0018896 471.79548081004566 67.377 0.13278 70.641 70.573 70.706 3.2636 15 9 2 0 0 0 0.82752 1 16255 16255 2.5775 0 1 142760 + 44458 29716 28112 28124 51191 51191 0.10008482818830089 TLINNQQIK 9 Unmodified _TLINNQQIK_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 536.3497924804688 2 536.31148 1070.60841 0.34868 0.000187 -0.27587 -0.00014795 0.072806 3.9047E-05 536.3116897234711 92.21 0.064331 92.21 92.175 92.24 0 7 5 2 0 0 0 0.46434 1 22312 22312 4.3292 0 1 68920 44459 10707 28113 28125 51192 51192 0.07592816880310238 TLINNQQIK 9 Unmodified _TLINNQQIK_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 536.31148 1070.60841 0.34868 0.000187 -0.27587 -0.00014795 0.072806 3.9047E-05 536.3116897234711 92.21 0.064331 92.21 92.175 92.24 0 0.018515 -0.0002601 NaN 4.3292 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 68920 44460 10707 28113 28125 0.07592816880310238 TLINNQQIK 9 Unmodified _TLINNQQIK_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 536.31148 1070.60841 0.52998 0.00028423 0.059735 3.2036E-05 0.58971 0.00031627 536.3113798876956 88.918 0.099014 92.37 92.283 92.382 3.4525 0.17912 9.988E-05 NaN 4.3292 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 89114 44461 10707 28113 28125 0.07592816880310238 TLINNQQIK 9 Unmodified _TLINNQQIK_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 536.31148 1070.60841 0.46741 0.00025068 -0.22127 -0.00011867 0.24614 0.00013201 536.3113159095369 88.673 0.046295 92.066 92.034 92.081 3.3931 -0.1252 -0.00020154 NaN 4.3292 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 55315 44462 10707 28113 28125 0.07592816880310238 TLINNQQIK 9 Unmodified _TLINNQQIK_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 536.31148 1070.60841 0.35508 0.00019043 0.034693 1.8606E-05 0.38977 0.00020904 536.3114124513245 88.696 1.0404 92.318 91.437 92.478 3.6229 0.12728 7.3019E-05 NaN 4.3292 185 122 3 NaN NaN NaN NaN 0 NaN NaN 0 351710 44463 10707 28113 28125 0.07592816880310238 TLINNQQIK 9 Unmodified _TLINNQQIK_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|47|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 536.31148 1070.60841 0.57348 0.00030756 -0.21798 -0.00011691 0.3555 0.00019066 536.3113279980578 88.181 0.44217 91.991 91.656 92.099 3.8104 -0.19971 -0.00019801 NaN 4.3292 83 54 2 NaN NaN NaN NaN 0 NaN NaN 0 196990 44464 10707 28113 28125 0.07592816880310238 TLIQAGDDEKN 11 Unmodified _TLIQAGDDEKN_ 0 0 0 ENST00000512977.1_1_5:137043266-137071515:-|nuORF;ENSG00000146021|ENST00000309755|KLHL3 ENST00000512977.1_1_5:137043266-137071515:-|nuORF ENST00000512977.1_1_5:137043266-137071515:-|nuORF MSMS UPN47_class_I_Rep_2 3 602.2988891601562 2 602.296224 1202.5779 NaN NaN NaN NaN NaN NaN NaN 70.902 1 74.184 73.684 74.684 3.2828 0 0 0 0.38417 1 17301 17301 4.1895 0.90819 1 44465 3423 28114 28126 51193 51193 -0.015290062953681627 TLIRFSLSKQG 11 Unmodified _TLIRFSLSKQG_ 0 0 0 REV__HAL1_dup20855|chr18:2886381-2887271:-|1.0123931735378198|0.0610929028686409|4.05|151.0|63|3|anti-sense REV__HAL1_dup20855|chr18:2886381-2887271:-|1.0123931735378198|0.0610929028686409|4.05|151.0|63|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 625.3681030273438 2 625.366787 1248.71902 0.53932 0.00033728 -0.14605 -9.1334E-05 0.39327 0.00024594 625.366704691107 91.595 0.44735 95.301 95.054 95.501 3.7053 136 66 3 0 0 0 0.61292 1 22830 22830 4.897 0 1 2468500 + 44466 23400 28115 28127 51194 51194 0.10461036868559859 TLIRFSLSKQG 11 Unmodified _TLIRFSLSKQG_ 0 0 0 REV__HAL1_dup20855|chr18:2886381-2887271:-|1.0123931735378198|0.0610929028686409|4.05|151.0|63|3|anti-sense REV__HAL1_dup20855|chr18:2886381-2887271:-|1.0123931735378198|0.0610929028686409|4.05|151.0|63|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 625.3682250976562 2 625.366787 1248.71902 0.49453 0.00030926 -0.75494 -0.00047212 -0.26042 -0.00016286 625.3661316892125 91.264 0.72783 95.02 94.702 95.43 3.7554 217 107 3 0 0 0 0.61292 1 21767 21767 4.897 0 1 12925000 + 44467 23400 28115 28127 51195 51195 0.10461036868559859 TLISDIEAV 9 Unmodified _TLISDIEAV_ 0 0 0 nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-2|TSPAN14 nc|ENSG00000108219|Q8NG11-2|TSPAN14 MULTI-MSMS UPN47_class_I_Rep_1 2 481.2674865722656 2 480.76604 959.517527 0.1151 5.5338E-05 -0.18721 -9.0005E-05 -0.072107 -3.4667E-05 480.7658734801281 72.308 0.3967 75.688 75.506 75.902 3.3799 43 27 2 0 0 0 0.28552 1 17689 17689 14.838 0 1 91077 44468 1855 28116 28128 51196 51196 0.03614928112187954 TLISDIEAV 9 Unmodified _TLISDIEAV_ 0 0 0 nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14 nc|ENSG00000108219|Q8NG11-2|TSPAN14 nc|ENSG00000108219|Q8NG11-2|TSPAN14 MULTI-SECPEP UPN47_class_I_Rep_2 3 481.33721923828125 2 480.76604 959.517527 0.16881 8.1159E-05 -0.19926 -9.5797E-05 -0.030446 -1.4638E-05 480.7658209697668 72.557 0.43307 75.855 75.713 76.146 3.2971 46 38 2 0 0 0 0.118 1 17813 17813 10.074 3.3508 1 88037 44469 1855 28116 28128 51197 51197 0.03614928112187954 TLISHFQL 8 Unmodified _TLISHFQL_ 0 0 0 L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|81|3|sense L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|81|3|sense L1MB2_dup8313|chr19:44184754-44188324:-|1.83654119549981|0.2014453756685406|3.19|150.0|81|3|sense MSMS UPN47_class_I_Rep_3 4 479.554931640625 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 38.305 1 41.547 41.047 42.047 3.2414 0 0 0 0.40746 1 7442 7442 0.69038 0 1 44470 10306 28117 28129 51198 51198 0.047903752771503605 TLISHIVKLDG 11 Unmodified _TLISHIVKLDG_ 0 0 0 REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense MSMS UPN47_class_I_Rep_1 2 598.32666015625 2 598.355888 1194.69722 NaN NaN NaN NaN NaN NaN NaN 52.246 1 55.804 55.304 56.304 3.5585 0 0 0 0.38417 1 11611 11611 4.5289 0.58447 1 + 44471 32673 28118 28130 51199 51199 0.10766232119999586 TLISHIVKLDG 11 Unmodified _TLISHIVKLDG_ 0 0 0 REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense MSMS UPN47_class_I_Rep_1 2 598.3576049804688 2 598.355888 1194.69722 NaN NaN NaN NaN NaN NaN NaN 52.266 1 55.824 55.324 56.324 3.5585 0 0 0 0.38417 1 11617 11617 4.5289 0.58447 1 + 44472 32673 28118 28130 51200 51200 0.10766232119999586 TLISHIVKLDG 11 Unmodified _TLISHIVKLDG_ 0 0 0 REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense MSMS UPN47_class_I_Rep_1 2 598.3580322265625 2 598.355888 1194.69722 NaN NaN NaN NaN NaN NaN NaN 52.963 1 56.521 56.021 57.021 3.5585 0 0 0 0.38417 1 11826 11826 4.5289 0.93237 1 + 44473 32673 28118 28130 51201 51201 0.10766232119999586 TLISHIVKLDG 11 Unmodified _TLISHIVKLDG_ 0 0 0 REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense MSMS UPN47_class_I_Rep_2 3 598.3566284179688 2 598.355888 1194.69722 NaN NaN NaN NaN NaN NaN NaN 52.381 1 55.714 55.214 56.214 3.3332 0 0 0 0.38417 1 11681 11681 4.5289 0.93237 1 + 44474 32673 28118 28130 51202 51202 0.10766232119999586 TLISHIVKLDG 11 Unmodified _TLISHIVKLDG_ 0 0 0 REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense REV__Tigger2_dup459|chr2:224565039-224567208:-|1.9035569230144476|0.0659191698438828|4.85|151.0|67|3|sense MSMS UPN47_class_I_Rep_2 3 598.3576049804688 2 598.355888 1194.69722 NaN NaN NaN NaN NaN NaN NaN 53.561 1 56.887 56.387 57.387 3.3266 0 0 0 0.38417 1 12038 12038 2.4985 0 1 + 44475 32673 28118 28130 51203 51203 0.10766232119999586 TLISNDYQL 9 Unmodified _TLISNDYQL_ 0 0 0 REV__L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|120|2|anti-sense REV__L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|120|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 533.774169921875 2 533.774396 1065.53424 0.36469 0.00019466 -0.65891 -0.00035171 -0.29422 -0.00015704 533.7740796821422 77.293 0.59203 80.625 80.319 80.911 3.3315 97 60 2 0 0 0 0.1249 1 19155 19155 29.082 0 1 170650 + 44476 24110 28119 28131 51204 51204 0.004094289981367183 TLISNDYQL 9 Unmodified _TLISNDYQL_ 0 0 0 REV__L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|120|2|anti-sense REV__L1M1_dup4693|chr9:62815813-62818112:+|1.423818353085879|0.0705565146323693|4.33|150.0|120|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 533.7745361328125 2 533.774396 1065.53424 0.42636 0.00022758 -0.71121 -0.00037963 -0.28485 -0.00015204 533.7739631211564 77.295 0.70451 80.564 80.2 80.904 3.269 133 76 2 0 0 0 0.090251 1 19213 19213 36.127 0 1 171350 + 44477 24110 28119 28131 51205 51205 0.004094289981367183 TLISRRRKWFE 11 Unmodified _TLISRRRKWFE_ 0 0 0 REV__nc|ENSG00000134343|Q9BYT9-2|ANO3 REV__nc|ENSG00000134343|Q9BYT9-2|ANO3 MULTI-MSMS UPN46_class_I_Rep_3 1 497.9560546875 3 497.956282 1490.84702 0.27434 0.00013661 -0.11669 -5.8104E-05 0.15766 7.8507E-05 497.95613358787716 46.047 0.22695 46.047 45.915 46.142 0 51 25 3 0 0 0 0.52833 1 9389 9389 7.0371 2.6309 1 610790 + 44478 19097 28120 28132 51206 51206 0.12122597182428763 TLISTKSRTI 10 Unmodified _TLISTKSRTI_ 0 0 0 REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 560.34033203125 2 560.340238 1118.66592 0.43763 0.00024522 0.021336 1.1955E-05 0.45896 0.00025718 560.340138796478 97.868 0.14069 97.868 97.731 97.871 0 41 16 3 0 0 0 0.56033 1 23817 23817 3.5965 0 1 538910 + 44479 17414 28121 28133 51207 51207 0.11133659085908221 TLISTKSRTI 10 Unmodified _TLISTKSRTI_ 0 0 0 REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.340576171875 2 560.340238 1118.66592 0.42477 0.00023802 0.050396 2.8239E-05 0.47517 0.00026625 560.3402061412282 93.495 1.0209 97.387 97.298 98.319 3.8914 403 138 5 0 0 0 0.56033 1 22282 22282 3.5965 0 1 7236100 + 44480 17414 28121 28133 51208 51208 0.11133659085908221 TLISTKSRTI 10 Unmodified _TLISTKSRTI_ 0 0 0 REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 560.340238 1118.66592 0.6349 0.00035576 -0.29327 -0.00016433 0.34163 0.00019143 560.3400067800999 94.262 0.12151 97.734 97.678 97.799 3.472 -0.069998 -0.00025249 NaN 3.5965 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 373670 + 44481 17414 28121 28133 0.11133659085908221 TLISTKSRTI 10 Unmodified _TLISTKSRTI_ 0 0 0 REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense REV__Cheshire_dup565|chr9:83674094-83676067:+|1.3870042143528625|0.3707516618597691|1.9|151.0|19|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 560.340238 1118.66592 0.50358 0.00028217 -0.080381 -4.504E-05 0.4232 0.00023713 560.3401129652606 94.403 0.16808 97.81 97.749 97.917 3.4068 0.0061341 -1.3915E-05 NaN 3.5965 40 23 2 NaN NaN NaN NaN 0 NaN NaN 0 540200 + 44482 17414 28121 28133 0.11133659085908221 TLIYFRKR 8 Unmodified _TLIYFRKR_ 0 0 0 L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|9|1|sense L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|9|1|sense L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 548.8338012695312 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 32.473 1 32.473 31.973 32.973 0 0 0 0 0.40746 1 5560 5560 0.69038 0 1 44483 11463 28122 28134 51209 51209 0.11129721222141598 TLIYFRKR 8 Unmodified _TLIYFRKR_ 0 0 0 L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|9|1|sense L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|9|1|sense L1MC4_dup22232|chr18:9226645-9227325:+|1.1342574749042131|0.0308574108961339|5.2|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 548.8338012695312 2 548.834926 1095.6553 0.18797 0.00010316 -1.215 -0.00066683 -1.027 -0.00056366 548.8341432716738 32.454 0.065762 32.454 32.427 32.493 0 5 3 2 0 0 0 0.72333 1 5560 5560 0.69038 0 1 59730 44484 11463 28122 28134 51210 51210 0.11129721222141598 TLIYSLFLLAR 11 Unmodified _TLIYSLFLLAR_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS UPN47_class_I_Rep_1 2 437.2671203613281 3 437.267463 1308.78056 -0.097418 -4.2598E-05 0.77726 0.00033987 0.67984 0.00029727 437.26752339697225 50.659 1.183 54.288 53.59 54.773 3.6285 99 57 3 0 0 0 0.68132 1 11195 11195 0.40827 0 1 111800 + 44485 18958 28123 28135 51211 51211 0.1385196856786024 TLKALADVEV 10 Unmodified _TLKALADVEV_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS UPN48_class_I_Rep_1 5 529.8078002929688 2 529.808239 1057.60193 0.31472 0.00016674 -0.94685 -0.00050165 -0.63213 -0.00033491 529.8075945043711 107.83 0.13641 111.47 111.41 111.54 3.6313 17 9 2 0 0 0 0.54078 1 26014 26014 6.7232 0 1 6992500 44486 4555 28124 28136 51212 51212 0.0754287892893899 TLKCSVLNTY 10 Unmodified _TLKCSVLNTY_ 0 0 0 REV__L1MC1_dup2830|chr3:177165018-177165816:+|2.300540160497923|0.0263303980851453|6.45|151.0|58|3|anti-sense REV__L1MC1_dup2830|chr3:177165018-177165816:+|2.300540160497923|0.0263303980851453|6.45|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_1 2 571.3101196289062 2 571.299724 1140.5849 NaN NaN NaN NaN NaN NaN NaN 64.918 1 68.274 67.774 68.774 3.3557 0 0 0 0.53105 1 15450 15450 6.2058 1.4498 1 + 44487 26542 28125 28137 51213 51213 0.0202263505150313 TLKDKLIL 8 Unmodified _TLKDKLIL_ 0 0 0 REV__ENSG00000112893.9,MAN2A1,chr5,+,I20.1,109846007,109847656|37|6.08|3|intron REV__ENSG00000112893.9,MAN2A1,chr5,+,I20.1,109846007,109847656|37|6.08|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 472.3129577636719 2 472.312961 942.611368 0.20648 9.7522E-05 -0.34001 -0.00016059 -0.13353 -6.3067E-05 472.3127506457286 72.719 0.06868 72.719 72.654 72.723 0 9 5 2 0 0 0 0.82752 1 16812 16812 2.3027 0 1 266940 + 44488 18492 28126 28138 51214 51214 0.13776692005137647 TLKDKLIL 8 Unmodified _TLKDKLIL_ 0 0 0 REV__ENSG00000112893.9,MAN2A1,chr5,+,I20.1,109846007,109847656|37|6.08|3|intron REV__ENSG00000112893.9,MAN2A1,chr5,+,I20.1,109846007,109847656|37|6.08|3|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 472.312961 942.611368 0.20648 9.7522E-05 -0.34001 -0.00016059 -0.13353 -6.3067E-05 472.3127506457286 72.719 0.06868 72.719 72.654 72.723 0 0 0 NaN 2.3027 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 266940 + 44489 18492 28126 28138 0.13776692005137647 TLKDRELSF 9 Unmodified _TLKDRELSF_ 0 0 0 nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 nc|ENSG00000145495|O60337-6|MARCHF6 MULTI-MSMS UPN46_class_I_Rep_3 1 554.8045654296875 2 554.803488 1107.59242 0.39467 0.00021897 -0.35119 -0.00019484 0.043487 2.4127E-05 554.8033714789632 43.637 0.39264 43.637 43.466 43.859 0 56 40 2 0 0 0 0.16799 4 8740 8727;8740;8753;8780 23.79 9.3844 1 183580 44490 3398 28127 28139 51215;51216;51217;51218 51216 0.0429311064342528 TLKEIKDN 8 Unmodified _TLKEIKDN_ 0 0 0 L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|3|1|sense L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|3|1|sense L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 480.7715759277344 2 480.771657 959.528761 NaN NaN NaN NaN NaN NaN NaN 113.8 1 117.38 116.88 117.88 3.572 0 0 0 0.40625 1 28098 28098 2.3027 0 1 44491 9346 28128 28140 51219 51219 0.04737750206322744 TLKELLKV 8 Unmodified _TLKELLKV_ 0 0 0 REV__Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|18|2|sense REV__Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 472.3135070800781 2 472.312961 942.611368 NaN NaN NaN NaN NaN NaN NaN 67.116 1 70.307 69.807 70.807 3.1914 0 0 0 0.40157 1 16231 16231 7.2892 0 1 + 44492 32791 28129 28141 51220 51220 0.13776692005137647 TLKGKNKI 8 Unmodified _TLKGKNKI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|30|3|sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|30|3|sense MSMS UPN48_class_I_Rep_1 5 451.2948913574219 2 451.295102 900.575651 NaN NaN NaN NaN NaN NaN NaN 37.711 1 41.216 40.716 41.716 3.5052 0 0 0 0.39242 1 6445 6445 10.824 0 1 + 44493 23453 28130 28142 51221 51221 0.12138654548118666 TLKGKNKI 8 Unmodified _TLKGKNKI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|30|3|sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 451.2940979003906 2 451.295102 900.575651 NaN NaN NaN NaN NaN NaN NaN 37.505 1 41.207 40.707 41.707 3.7021 0 0 0 0.39242 1 6425 6425 10.824 0 1 + 44494 23453 28130 28142 51222 51222 0.12138654548118666 TLKHLESCSW 10 Unmodified _TLKHLESCSW_ 0 0 0 REV__ENST00000396573.6_1_16:9856161-9856311:-|nuORF REV__ENST00000396573.6_1_16:9856161-9856311:-|nuORF MSMS UPN47_class_I_Rep_1 2 602.2972412109375 2 602.294973 1202.57539 NaN NaN NaN NaN NaN NaN NaN 20.505 1 24.149 23.649 24.649 3.6436 0 0 0 0.53105 1 2071 2071 0.40072 0 1 + 44495 22126 28131 28143 51223 51223 -0.017791332340266308 TLKIDYFKI 9 Unmodified _TLKIDYFKI_ 0 0 0 REV__L1MB7_dup16211|chr12:118349246-118349770:+|2.4946310725119227|0.0091713574361545|8.09|151.0|23|1|anti-sense REV__L1MB7_dup16211|chr12:118349246-118349770:+|2.4946310725119227|0.0091713574361545|8.09|151.0|23|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.8369140625 2 570.8368 1139.65905 0.53555 0.00030571 0.014902 8.5068E-06 0.55045 0.00031422 570.8369131986706 63.055 0.29727 66.518 66.345 66.642 3.4625 19 16 2 0 0 0 0.43153 1 14155 14155 6.2058 0 1 70746 + 44496 26159 28132 28144 51224 51224 0.09480346205327805 TLKKFLPI 8 Unmodified _TLKKFLPI_ 0 0 0 L1PA4_dup4970|chr6:119373605-119376410:-|1.385290244742229|0.4292382336400565|1.69|151.0|136|3|anti-sense L1PA4_dup4970|chr6:119373605-119376410:-|1.385290244742229|0.4292382336400565|1.69|151.0|136|3|anti-sense L1PA4_dup4970|chr6:119373605-119376410:-|1.385290244742229|0.4292382336400565|1.69|151.0|136|3|anti-sense MSMS UPN48_class_I_Rep_1 5 480.6510925292969 2 480.318046 958.621539 NaN NaN NaN NaN NaN NaN NaN 47.3 1 50.822 50.322 51.322 3.5219 0 0 0 0.40738 1 9332 9332 0.79363 0 1 44497 14355 28133 28145 51225 51225 0.14057299730382056 TLKKKKKEKRA 11 Unmodified _TLKKKKKEKRA_ 0 0 0 ENST00000446401.1_1_2:114589148-114600928:-|nuORF ENST00000446401.1_1_2:114589148-114600928:-|nuORF ENST00000446401.1_1_2:114589148-114600928:-|nuORF MSMS UPN48_class_I_Rep_2 6 453.30584716796875 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 114.62 1 118.29 117.79 118.79 3.6616 0 0 0 0.38417 1 27405 27405 0.094841 0 1 44498 6791 28134 28146 51226 51226 0.22873242364698854 TLKKKKKEKRA 11 Unmodified _TLKKKKKEKRA_ 0 0 0 ENST00000446401.1_1_2:114589148-114600928:-|nuORF ENST00000446401.1_1_2:114589148-114600928:-|nuORF ENST00000446401.1_1_2:114589148-114600928:-|nuORF MSMS UPN48_class_I_Rep_2 6 453.3051452636719 3 453.304911 1356.8929 NaN NaN NaN NaN NaN NaN NaN 117.49 1 121.15 120.65 121.65 3.6607 0 0 0 0.38417 1 28161 28161 0.094841 0 1 44499 6791 28134 28146 51227 51227 0.22873242364698854 TLKKKKKKK 9 Unmodified _TLKKKKKKK_ 0 0 0 AluSx_dup105532|chr19:14385009-14385311:-|3.5325724550235926|0.0184162270238562|7.58|151.0|5|1|sense;L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|10|1|sense;AluJr_dup71377|chr17:30713990-30714291:+|1.2568783509414885|0.0091903319937772|7.1|151.0|8|2|sense REV__AluSz_dup67860|chr12:66236267-66236594:+|4.878664981148395|0.2216958913757622|4.46|151.0|13|3|sense REV__AluSz_dup67860|chr12:66236267-66236594:+|4.878664981148395|0.2216958913757622|4.46|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 565.4114990234375 2 565.410801 1128.80705 NaN NaN NaN NaN NaN NaN NaN 101.74 1 101.74 101.24 102.24 0 0 0 0 0.4029 1 24824 24824 0 0 1 44500 176 28135 28147 51228 51228 0.2477970224983892 TLKKKKLLLL 10 Unmodified _TLKKKKLLLL_ 0 0 0 REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense MSMS UPN47_class_I_Rep_1 2 599.4368286132812 2 599.436484 1196.85842 NaN NaN NaN NaN NaN NaN NaN 109.85 1 113.46 112.96 113.96 3.6046 0 0 0 0.53105 1 27103 27103 0 0 1 + 44501 32727 28136 28148 51229 51229 0.2678602622388553 TLKKKKLLLL 10 Unmodified _TLKKKKLLLL_ 0 0 0 REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense MSMS UPN47_class_I_Rep_2 3 599.702880859375 2 599.436484 1196.85842 NaN NaN NaN NaN NaN NaN NaN 107.38 1 110.92 110.42 111.42 3.5345 0 0 0 0.53105 1 25981 25981 0 0 1 + 44502 32727 28136 28148 51230 51230 0.2678602622388553 TLKKKKLLLL 10 Unmodified _TLKKKKLLLL_ 0 0 0 REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense MSMS UPN47_class_I_Rep_3 4 599.4374389648438 2 599.436484 1196.85842 NaN NaN NaN NaN NaN NaN NaN 110.41 1 113.94 113.44 114.44 3.529 0 0 0 0.53105 1 27098 27098 0 0 1 + 44503 32727 28136 28148 51231 51231 0.2678602622388553 TLKKKKLLLL 10 Unmodified _TLKKKKLLLL_ 0 0 0 REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense REV__Tigger3b_dup1074|chr3:41210475-41210796:-|1.680376473225438|0.0766601532069773|4.45|151.0|8|3|sense MSMS UPN48_class_I_Rep_2 6 599.4364624023438 2 599.436484 1196.85842 NaN NaN NaN NaN NaN NaN NaN 110.73 1 114.4 113.9 114.9 3.669 0 0 0 0.53105 1 26343 26343 0 0 1 + 44504 32727 28136 28148 51232 51232 0.2678602622388553 TLKKPMLI 8 Unmodified _TLKKPMLI_ 0 0 0 REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|26|1|anti-sense REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 472.3127746582031 2 472.304081 942.59361 NaN NaN NaN NaN NaN NaN NaN 66.03 1 69.388 68.888 69.888 3.3576 0 0 0 0.40364 1 15790 15790 5.7604 0 1 + 44505 27132 28137 28149 51233 51233 0.12001653478637309 TLKKQQFK 8 Unmodified _TLKKQQFK_ 0 0 0 L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|28|1|sense;L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|105|3|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|28|1|sense L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|28|1|sense MSMS UPN48_class_I_Rep_3 7 510.81427001953125 2 510.813659 1019.61277 NaN NaN NaN NaN NaN NaN NaN 47.559 1 51.193 50.693 51.693 3.6339 0 0 0 0.4044 1 9345 9345 4.756 0 1 44506 15083 28138 28150 51234 51234 0.10374326093904074 TLKKTTTY 8 Unmodified _TLKKTTTY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MSMS UPN46_class_I_Rep_3 1 478.2762145996094 2 478.276575 954.538597 NaN NaN NaN NaN NaN NaN NaN 16.893 1 16.893 16.393 17.393 0 0 0 0 0.40738 1 1243 1243 0.79363 0 1 44507 4648 28139 28151 51235 51235 0.05950938211697121 TLKNKLMK 8 Unmodified _TLKNKLMK_ 0 0 0 REV__L1MD2_dup2722|chr4:139320011-139320509:-|1.1758182751148396|0.0054244594771067|7.76|151.0|2|1|sense REV__L1MD2_dup2722|chr4:139320011-139320509:-|1.1758182751148396|0.0054244594771067|7.76|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 488.3065185546875 2 488.304613 974.594672 NaN NaN NaN NaN NaN NaN NaN 63 1 66.473 65.973 66.973 3.4738 0 0 0 0.40643 1 14128 14128 2.0598 0 1 + 44508 27397 28140 28152 51236 51236 0.10635867847543068 TLKNKLMK 8 Unmodified _TLKNKLMK_ 0 0 0 REV__L1MD2_dup2722|chr4:139320011-139320509:-|1.1758182751148396|0.0054244594771067|7.76|151.0|2|1|sense REV__L1MD2_dup2722|chr4:139320011-139320509:-|1.1758182751148396|0.0054244594771067|7.76|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 488.3063049316406 2 488.304613 974.594672 NaN NaN NaN NaN NaN NaN NaN 62.683 1 66.194 65.694 66.694 3.5104 0 0 0 0.40643 1 13953 13953 2.0598 0 1 + 44509 27397 28140 28152 51237 51237 0.10635867847543068 TLKQPPYL 8 Unmodified _TLKQPPYL_ 0 0 0 REV__L1MC1_dup11102|chr15:44358374-44358874:+|1.195994774416141|0.0193263352690873|5.95|151.0|12|2|sense REV__L1MC1_dup11102|chr15:44358374-44358874:+|1.195994774416141|0.0193263352690873|5.95|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 480.2801513671875 2 480.28166 958.548768 NaN NaN NaN NaN NaN NaN NaN 20.482 1 24.149 23.649 24.649 3.6667 0 0 0 0.40625 1 1750 1750 2.3027 0 1 + 44510 26494 28141 28153 51238 51238 0.06783545936934843 TLKRGRKL 8 Unmodified _TLKRGRKL_ 0 0 0 HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|29|3|sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|29|3|sense HAL1_dup19188|chr15:68124752-68125698:-|3.772851691086449|0.0317771958635783|6.89|151.0|29|3|sense MSMS UPN47_class_I_Rep_2 3 486.3285827636719 2 486.327268 970.639983 NaN NaN NaN NaN NaN NaN NaN 73.654 1 76.959 76.459 77.459 3.3048 0 0 0 0.39242 1 18121 18121 10.824 0 1 44511 7852 28142 28154 51239 51239 0.15348854424951242 TLKRKKKK 8 Unmodified _TLKRKKKK_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS UPN47_class_I_Rep_1 2 515.3665161132812 2 515.366393 1028.71823 0.38384 0.00019782 0.020066 1.0341E-05 0.40391 0.00020816 515.3662903114426 108.19 0.11555 111.82 111.76 111.87 3.6355 37 11 4 0 0 0 0.82752 1 26550 26550 0.69038 0 1 11509000 + 44512 20562 28143 28155 51240 51240 0.20502287010162945 TLKRKKKK 8 Unmodified _TLKRKKKK_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS UPN47_class_I_Rep_2 3 515.3665771484375 2 515.366393 1028.71823 0.28267 0.00014568 0.077498 3.994E-05 0.36017 0.00018562 515.3663415905927 108.18 0.43124 111.71 111.46 111.89 3.5333 96 46 3 0 0 0 0.82752 1 26260 26260 0.69038 0 1 21581000 + 44513 20562 28143 28155 51241 51241 0.20502287010162945 TLKRKKKK 8 Unmodified _TLKRKKKK_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS UPN48_class_I_Rep_2 6 515.366455078125 2 515.366393 1028.71823 0.34194 0.00017623 0.14019 7.225E-05 0.48214 0.00024848 515.3663626730502 108.22 0.4333 111.89 111.72 112.15 3.6746 186 49 4 0 0 0 0.82752 2 25594 25594;25638 0.69038 0 1 47188000 + 44514 20562 28143 28155 51242;51243 51242 0.20502287010162945 TLKRKKKK 8 Unmodified _TLKRKKKK_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 515.366393 1028.71823 0.38384 0.00019782 0.020066 1.0341E-05 0.40391 0.00020816 515.3662903114426 108.19 0.11555 111.82 111.76 111.87 3.6355 0.16402 -5.301E-05 NaN 0.69038 37 11 4 NaN NaN NaN NaN 0 NaN NaN 0 11509000 + 44515 20562 28143 28155 0.20502287010162945 TLKRKKKK 8 Unmodified _TLKRKKKK_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MATCH UPN47_class_I_Rep_3 4 2 515.366393 1028.71823 0.34137 0.00017593 0.60696 0.0003128 0.94832 0.00048873 515.3666249365557 107.94 0.03363 111.47 111.45 111.48 3.5382 -0.18383 0.00055192 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1640900 + 44516 20562 28143 28155 0.20502287010162945 TLKRKKKK 8 Unmodified _TLKRKKKK_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MATCH UPN48_class_I_Rep_3 7 2 515.366393 1028.71823 0.33729 0.00017383 0.2205 0.00011364 0.55778 0.00028746 515.3663231425846 107.9 0.13295 111.59 111.46 111.6 3.6813 -0.072315 0.00015358 NaN 0.69038 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5246200 + 44517 20562 28143 28155 0.20502287010162945 TLKRNFILFI 10 Unmodified _TLKRNFILFI_ 0 0 0 L1MB4_dup2466|chr5:71106961-71107501:+|1.1833747475906682|0.0831566302251321|3.83|146.0|26|1|anti-sense;L1MB4_dup2463|chr5:70982082-70982622:+|1.6428706774711972|0.1367608981336852|3.59|149.0|26|1|anti-sense;L1MB4_dup2460|chr5:70106616-70107156:+|1.4854416167108744|0.1297401148701489|3.52|151.0|26|1|anti-sense L1MB4_dup2466|chr5:71106961-71107501:+|1.1833747475906682|0.0831566302251321|3.83|146.0|26|1|anti-sense L1MB4_dup2466|chr5:71106961-71107501:+|1.1833747475906682|0.0831566302251321|3.83|146.0|26|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 632.3616943359375 2 632.892441 1263.77033 0.43121 0.00027291 -0.071988 -4.5561E-05 0.35922 0.00022735 632.8925069024185 98.68 0.55711 102.29 101.98 102.54 3.6065 119 78 2 0 0 0 0.84575 1 23825 23825 3.5965 0 1 1449300 44518 10489 28144 28156 51244 51244 0.14899405633263996 TLKRTKTI 8 Unmodified _TLKRTKTI_ 0 0 0 REV__L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|61|1|anti-sense REV__L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|61|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.81298828125 2 480.813659 959.612765 -0.77298 -0.00037166 0.15515 7.4596E-05 -0.61784 -0.00029707 480.8135866247236 14.321 0.60586 17.691 17.574 18.179 3.3697 150 72 3 0 0 0 0.82752 2 587 559;587 4.3292 0 1 201290 + 44519 27031 28145 28157 51245;51246 51246 0.13134326093916115 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN47_class_I_Rep_1 2 513.3171997070312 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 40.423 1 44.095 43.595 44.595 3.6719 0 0 0 0.40643 1 8014 8014 2.0598 0 1 + 44520 18450 28146 28158 51247 51247 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN47_class_I_Rep_1 2 513.3170776367188 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 40.834 1 44.506 44.006 45.006 3.6719 0 0 0 0.40643 1 8139 8139 2.0598 0 1 + 44521 18450 28146 28158 51248 51248 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN47_class_I_Rep_3 4 513.3174438476562 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 41.164 1 44.402 43.902 44.902 3.2372 0 0 0 0.40643 1 8324 8324 2.0598 0 1 + 44522 18450 28146 28158 51249 51249 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_1 5 513.3170776367188 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 42.259 1 45.767 45.267 46.267 3.5079 0 0 0 0.40643 1 7795 7795 2.0598 0 1 + 44523 18450 28146 28158 51250 51250 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_1 5 513.3173217773438 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 47.628 1 51.149 50.649 51.649 3.5219 0 0 0 0.40643 1 9432 9432 2.0598 0 1 + 44524 18450 28146 28158 51251 51251 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_2 6 513.3170166015625 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 45.832 1 49.589 49.089 50.089 3.7579 0 0 0 0.40643 1 8889 8889 2.0598 0 1 + 44525 18450 28146 28158 51252 51252 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_3 7 513.3175048828125 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 46.029 1 49.666 49.166 50.166 3.6369 0 0 0 0.40643 1 8879 8879 2.0598 0 1 + 44526 18450 28146 28158 51253 51253 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_3 7 513.3169555664062 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 47.662 1 51.296 50.796 51.796 3.6339 0 0 0 0.40643 1 9375 9375 2.0598 0 1 + 44527 18450 28146 28158 51254 51254 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_3 7 513.316650390625 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 47.945 1 51.578 51.078 52.078 3.6339 0 0 0 0.40643 1 9463 9463 2.0598 0 1 + 44528 18450 28146 28158 51255 51255 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_3 7 513.2849731445312 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 50.759 1 54.369 53.869 54.869 3.6105 0 0 0 0.40643 1 10332 10332 2.0598 0 1 + 44529 18450 28146 28158 51256 51256 0.10686049676360199 TLKRWPKP 8 Unmodified _TLKRWPKP_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS UPN48_class_I_Rep_3 7 513.3175048828125 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 54.69 1 58.259 57.759 58.759 3.5694 0 0 0 0.40643 1 11522 11522 2.0598 0 1 + 44530 18450 28146 28158 51257 51257 0.10686049676360199 TLKSLLEGL 9 Unmodified _TLKSLLEGL_ 0 0 0 REV__ENST00000460601.5_1_20:57569750-57570100:+|nuORF REV__ENST00000460601.5_1_20:57569750-57570100:+|nuORF MSMS UPN47_class_I_Rep_3 4 487.3003234863281 2 487.30005 972.585547 NaN NaN NaN NaN NaN NaN NaN 62.025 1 65.192 64.692 65.692 3.1667 0 0 0 0.38639 1 14675 14675 3.9444 0 1 + 44531 22425 28147 28159 51258 51258 0.09815797762871625 TLKSYKLSF 9 Unmodified _TLKSYKLSF_ 0 0 0 ENST00000546332.1_1_X:15288045-15288583:-|nuORF ENST00000546332.1_1_X:15288045-15288583:-|nuORF ENST00000546332.1_1_X:15288045-15288583:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.7949829101562 2 543.813325 1085.6121 NaN NaN NaN NaN NaN NaN NaN 53.363 1 56.973 56.473 57.473 3.6098 0 0 0 0.28335 1 11177 11177 11.64 0 1 44532 7378 28148 28160 51259 51259 0.07271486654190085 TLKTTKRI 8 Unmodified _TLKTTKRI_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|87|3|sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|87|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.81292724609375 2 480.813659 959.612765 -0.21293 -0.00010238 -0.36126 -0.0001737 -0.57419 -0.00027608 480.8133552624228 14.277 0.42286 17.664 17.558 17.98 3.3871 121 52 3 0 0 0 0.82752 1 574 574 1.8442 0 1 250870 + 44533 25287 28149 28161 51260 51260 0.13134326093893378 TLKWINTF 8 Unmodified _TLKWINTF_ 0 0 0 REV__L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|23|3|sense REV__L1MB2_dup8127|chr19:21730480-21731187:+|1.0628868882723146|0.055004534516132|4.27|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.2970581054688 2 511.78711 1021.55967 0.16537 8.4632E-05 2.6766 0.0013698 2.8419 0.0014545 511.78498424617766 52.521 0.60373 56.079 55.955 56.559 3.5585 106 36 4 0 0 0 0.82752 1 11761 11761 5.2307 0 1 169740 + 44534 25781 28150 28162 51261 51261 0.04974948311235039 TLLCHCLIY 9 Unmodified _TLLCHCLIY_ 0 0 0 REV__L1MEg_dup11006|chr13:44566630-44568179:+|1.1161389409275964|0.0394383111024348|4.82|149.0|91|3|anti-sense REV__L1MEg_dup11006|chr13:44566630-44568179:+|1.1161389409275964|0.0394383111024348|4.82|149.0|91|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 539.7740478515625 2 539.774831 1077.53511 0.35994 0.00019428 -0.97499 -0.00052627 -0.61505 -0.00033199 539.7743645196406 69.963 0.39156 73.239 73.007 73.398 3.2761 45 32 2 0 0 0 0.33654 1 16995 16995 11.64 0 1 69552 + 44535 28714 28151 28163 51262 51262 -0.0005577115814503486 TLLEERYAY 9 Unmodified _TLLEERYAY_ 0 0 0 REV__MER52C_dup234|chr11:72925719-72926790:+|1.1763832644006675|0.0215067257314393|5.77|151.0|6|1|sense REV__MER52C_dup234|chr11:72925719-72926790:+|1.1763832644006675|0.0215067257314393|5.77|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 579.2645263671875 2 579.295496 1156.57644 NaN NaN NaN NaN NaN NaN NaN 70.166 1 73.377 72.877 73.877 3.2113 0 0 0 0.38478 1 17149 17149 4.3292 0 1 + 44536 31432 28152 28164 51263 51263 0.004414044065242706 TLLEKDYFL 9 Unmodified _TLLEKDYFL_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS UPN47_class_I_Rep_1 2 571.3120727539062 2 571.310615 1140.60668 0.34024 0.00019438 -0.20304 -0.000116 0.1372 7.8386E-05 571.3103428505793 65.147 0.41605 68.503 68.376 68.792 3.3557 45 26 2 0 0 0 0.20317 1 15499 15499 20.415 1.1575 1 72526 44537 3685 28153 28165 51264 51264 0.041997630717105494 TLLEKDYFL 9 Unmodified _TLLEKDYFL_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS UPN47_class_I_Rep_2 3 571.3117065429688 2 571.310615 1140.60668 0.37323 0.00021323 -0.065161 -3.7227E-05 0.30807 0.000176 571.3104266190044 65.383 0.2646 68.639 68.566 68.83 3.2556 28 18 2 0 0 0 0.2924 1 15651 15651 14.405 0.49933 1 140360 44538 3685 28153 28165 51265 51265 0.041997630717105494 TLLENHSV 8 Unmodified _TLLENHSV_ 0 0 0 REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|23|2|anti-sense REV__LTR41_dup151|chr2:25326467-25327302:+|1.474809535140423|0.1087341444512253|3.76|151.0|23|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.7425842285156 2 456.742899 911.471246 -0.4841 -0.00022111 0.15915 7.269E-05 -0.32496 -0.00014842 456.74286881643627 38.54 0.7317 41.928 41.655 42.386 3.3879 112 56 3 0 0 0 0.82752 1 7573 7573 7.9102 0 1 163130 + 44539 30920 28154 28166 51266 51266 0.01196908000770236 TLLETEMLL 9 Oxidation (M) _TLLETEM(Oxidation (M))LL_ TLLETEM(1)LL TLLETEM(42)LL 0 0 1 nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF nc|ENSG00000164118|Q9C0F1-2|CEP44 nc|ENSG00000164118|Q9C0F1-2|CEP44 MSMS UPN47_class_I_Rep_1 2 539.788330078125 2 539.788658 1077.56276 NaN NaN NaN NaN NaN NaN NaN 73.418 1 76.804 76.304 77.304 3.3861 0 0 0 0.036836 1 18026 18026 41.84 20.968 1 44540 4085 28155 28167 51267 51267 133 0.027084105830681438 TLLETEMLL 9 Oxidation (M) _TLLETEM(Oxidation (M))LL_ TLLETEM(1)LL TLLETEM(50)LL 0 0 1 nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF nc|ENSG00000164118|Q9C0F1-2|CEP44 nc|ENSG00000164118|Q9C0F1-2|CEP44 MSMS UPN47_class_I_Rep_1 2 539.7888793945312 2 539.788658 1077.56276 NaN NaN NaN NaN NaN NaN NaN 73.556 1 76.942 76.442 77.442 3.3861 0 0 0 0.026253 1 18065 18065 49.933 29.062 1 44541 4085 28155 28167 51268 51268 133 0.027084105830681438 TLLETEMLL 9 Oxidation (M) _TLLETEM(Oxidation (M))LL_ TLLETEM(1)LL TLLETEM(65)LL 0 0 1 nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF nc|ENSG00000164118|Q9C0F1-2|CEP44 nc|ENSG00000164118|Q9C0F1-2|CEP44 MULTI-MSMS UPN47_class_I_Rep_2 3 539.7889404296875 2 539.788658 1077.56276 0.39638 0.00021396 0.15224 8.2176E-05 0.54862 0.00029614 539.7885709281628 73.848 0.5836 77.153 76.823 77.407 3.3048 101 58 2 0 0 0 0.01718 2 18151 18151;18185 65.235 44.781 1 178890 44542 4085 28155 28167 51269;51270 51269 133 0.027084105830681438 TLLETEMLL 9 Oxidation (M) _TLLETEM(Oxidation (M))LL_ TLLETEM(1)LL TLLETEM(56)LL 0 0 1 nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF nc|ENSG00000164118|Q9C0F1-2|CEP44 nc|ENSG00000164118|Q9C0F1-2|CEP44 MULTI-MSMS UPN47_class_I_Rep_3 4 539.7890625 2 539.788658 1077.56276 0.43527 0.00023496 0.65559 0.00035388 1.0909 0.00058883 539.7886433890185 73.781 0.53687 77.017 76.826 77.363 3.2363 108 56 3 0 0 0 0.032038 2 18240 18204;18240 56.177 35.306 1 181520 44543 4085 28155 28167 51271;51272 51272 133 0.027084105830681438 TLLGHEFVL 9 Unmodified _TLLGHEFVL_ 0 0 0 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000425026.1_1_Y:10028050-10028227:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 514.7923583984375 2 514.792392 1027.57023 0.22119 0.00011387 0.0028714 1.4782E-06 0.22406 0.00011535 514.7922197281378 66.791 1.1614 70.153 69.624 70.786 3.3611 127 87 3 0 0 0 0.09884 2 15996 15996;16052 34.102 7.2188 1 266980 44544 689 28156 28168 51273;51274 51273 0.057549309656678815 TLLGHEFVL 9 Unmodified _TLLGHEFVL_ 0 0 0 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000425026.1_1_Y:10028050-10028227:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 514.7920532226562 2 514.792392 1027.57023 0.27305 0.00014057 -0.060801 -3.13E-05 0.21225 0.00010927 514.7923183142335 67.046 0.88669 70.237 69.802 70.689 3.1914 102 67 2 0 0 0 0.051515 3 16172 16172;16213;16255 48.346 12.219 1 229230 44545 689 28156 28168 51275;51276;51277 51275 0.057549309656678815 TLLGHEFVL 9 Unmodified _TLLGHEFVL_ 0 0 0 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000425026.1_1_Y:10028050-10028227:-|nuORF MSMS UPN47_class_I_Rep_3 4 514.7921142578125 2 514.792392 1027.57023 NaN NaN NaN NaN NaN NaN NaN 67.899 1 71.092 70.592 71.592 3.1927 0 0 0 0.2088 1 16466 16466 15.847 1.9411 1 44546 689 28156 28168 51278 51278 0.057549309656678815 TLLGLLSAL 9 Unmodified _TLLGLLSAL_ 0 0 0 ENSG00000188822|ENST00000374472|CNR2 ENSG00000188822|ENST00000374472|CNR2 ENSG00000188822|ENST00000374472|CNR2 MSMS UPN47_class_I_Rep_3 4 450.7916259765625 2 450.791861 899.569169 NaN NaN NaN NaN NaN NaN NaN 85.771 1 89.143 88.643 89.643 3.3716 0 0 0 0.22485 1 21490 21490 14.838 0 1 44547 5256 28157 28169 51279 51279 0.11536716596742735 TLLGMGLAL 9 Oxidation (M) _TLLGM(Oxidation (M))GLAL_ TLLGM(1)GLAL TLLGM(44)GLAL 0 0 1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 MULTI-MSMS UPN47_class_I_Rep_1 2 452.76239013671875 2 452.762246 903.50994 0.070193 3.1781E-05 0.072417 3.2788E-05 0.14261 6.4569E-05 452.7621769456957 74.977 0.40732 78.37 78.065 78.472 3.3937 71 37 2 0 0 0 0.060667 2 18438 18438;18474 44.407 12.29 1 191870 44548 699 28158 28170 51280;51281 51280 2 0.05432497310914641 TLLGMGLAL 9 Oxidation (M) _TLLGM(Oxidation (M))GLAL_ TLLGM(1)GLAL TLLGM(54)GLAL 0 0 1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 MULTI-MSMS UPN47_class_I_Rep_1 2 452.76214599609375 2 452.762246 903.50994 0.071934 3.2569E-05 -0.17706 -8.0167E-05 -0.10513 -4.7598E-05 452.7621112348143 75.146 0.43261 78.54 78.458 78.89 3.3937 60 38 2 0 0 0 0.038568 2 18556 18516;18556 53.576 15.424 1 217090 44549 699 28158 28170 51282;51283 51283 2 0.05432497310914641 TLLGMGLAL 9 Oxidation (M) _TLLGM(Oxidation (M))GLAL_ 0 0 1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 ENSG00000005421|ENST00000222381|PON1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 452.762246 903.50994 -0.19798 -8.9639E-05 0.50597 0.00022908 0.30798 0.00013944 452.76238505894617 75.188 0.79281 78.434 78.103 78.895 3.2464 0.031843 0.00019319 NaN 44.407 132 77 2 NaN NaN NaN NaN 0 NaN NaN 0 226480 44550 699 28158 28170 2 0.05432497310914641 TLLGTELEI 9 Unmodified _TLLGTELEI_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS UPN47_class_I_Rep_3 4 494.78173828125 2 494.78169 987.548827 0.23894 0.00011823 0.10981 5.4334E-05 0.34876 0.00017256 494.7816243418545 78.964 0.5574 82.259 81.998 82.555 3.295 79 51 2 0 0 0 0.36392 1 19794 19794 10.074 0 1 146270 + 44551 17969 28159 28171 51284 51284 0.0545550114627531 TLLGTTVAGL 10 Unmodified _TLLGTTVAGL_ 0 0 0 REV__nc|ENSG00000078295|Q08462-2|ADCY2 REV__nc|ENSG00000078295|Q08462-2|ADCY2 MULTI-MSMS UPN47_class_I_Rep_2 3 473.2843933105469 2 473.2844 944.554247 0.12809 6.0621E-05 -0.25371 -0.00012007 -0.12562 -5.9454E-05 473.2841730174515 77.033 0.91872 80.365 79.993 80.911 3.3315 234 94 3 0 0 0 0.46161 1 19004 19004 14.838 0 1 761290 + 44552 31943 28160 28172 51285 51285 0.07975224728750163 TLLGTTVAGL 10 Unmodified _TLLGTTVAGL_ 0 0 0 REV__nc|ENSG00000078295|Q08462-2|ADCY2 REV__nc|ENSG00000078295|Q08462-2|ADCY2 MULTI-MSMS UPN47_class_I_Rep_3 4 473.284423828125 2 473.2844 944.554247 0.030367 1.4372E-05 -0.063761 -3.0177E-05 -0.033394 -1.5805E-05 473.28426485509493 77.058 0.82748 80.327 80.002 80.829 3.269 216 89 3 0 0 0 0.46161 1 19104 19104 14.838 0 1 614400 + 44553 31943 28160 28172 51286 51286 0.07975224728750163 TLLHEIFN 8 Unmodified _TLLHEIFN_ 0 0 0 MER47A_dup2495|chr22:49867756-49868098:-|1.3022917667497145|0.0302127312320986|5.43|150.0|13|3|sense;MER47A_dup1611|chr10:74992306-74992647:-|1.3315789136833178|0.01999779772646|6.06|151.0|2|1|sense MER47A_dup2495|chr22:49867756-49868098:-|1.3022917667497145|0.0302127312320986|5.43|150.0|13|3|sense MER47A_dup2495|chr22:49867756-49868098:-|1.3022917667497145|0.0302127312320986|5.43|150.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.7696533203125 2 493.768917 985.523281 0.099632 4.9195E-05 0.30934 0.00015274 0.40897 0.00020194 493.76891487436905 54.109 0.51737 57.678 57.45 57.967 3.5694 49 31 2 0 0 0 0.82752 1 11393 11393 12.532 0 1 102190 44554 16002 28161 28173 51287 51287 0.029940714145254788 TLLIANETL 9 Unmodified _TLLIANETL_ 0 0 0 ENSG00000113525|ENST00000231454|IL5 ENSG00000113525|ENST00000231454|IL5 ENSG00000113525|ENST00000231454|IL5 MULTI-MSMS UPN47_class_I_Rep_1 2 494.2894287109375 2 494.289682 986.564812 0.065099 3.2178E-05 -0.24251 -0.00011987 -0.17741 -8.7693E-05 494.28941290889816 51.977 0.62991 55.571 55.271 55.9 3.5932 75 46 2 0 0 0 0.38714 2 11592 11592;11622 8.7454 0 1 170920 44555 2049 28162 28174 51288;51289 51288 0.07099207383191697 TLLISLSGAL 10 Unmodified _TLLISLSGAL_ 0 0 0 REV__L1PA5_dup5778|chr8:90023720-90027759:-|1.9237790846135288|0.2596789000339231|2.89|151.0|143|1|anti-sense REV__L1PA5_dup5778|chr8:90023720-90027759:-|1.9237790846135288|0.2596789000339231|2.89|151.0|143|1|anti-sense MSMS UPN47_class_I_Rep_1 2 494.3096923828125 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 63.037 1 66.397 65.897 66.897 3.3595 0 0 0 0.53105 1 14892 14892 9.3831 0 1 + 44556 29786 28163 28175 51290 51290 0.10736084279915303 TLLIVHQIF 9 Unmodified _TLLIVHQIF_ 0 0 0 L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|33|2|anti-sense L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|33|2|anti-sense L1MD3_dup1139|chr3:196678347-196679052:+|1.0208317274137917|0.0149227426374257|6.1|151.0|33|2|anti-sense MSMS UPN48_class_I_Rep_2 6 542.3298950195312 2 542.331685 1082.64882 NaN NaN NaN NaN NaN NaN NaN 57.474 1 60.988 60.488 61.488 3.5142 0 0 0 0.39428 1 12434 12434 2.0598 0 1 44557 12057 28164 28176 51291 51291 0.11079783270724874 TLLKAVVSL 9 Unmodified _TLLKAVVSL_ 0 0 0 REV__L1MEc_dup14154|chr13:28211692-28213011:+|7.84172336446793|0.0439816027571001|7.48|151.0|58|1|anti-sense REV__L1MEc_dup14154|chr13:28211692-28213011:+|7.84172336446793|0.0439816027571001|7.48|151.0|58|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 471.7954406738281 2 472.312961 942.611368 0.01975 9.3283E-06 -0.31381 -0.00014822 -0.29406 -0.00013889 472.31260110209024 66.75 0.24614 70.009 69.949 70.195 3.2588 21 16 2 0 0 0 0.12157 1 16063 16063 6.2058 0 1 60815 + 44558 28377 28165 28177 51292 51292 0.13776692005137647 TLLKEIKV 8 Unmodified _TLLKEIKV_ 0 0 0 L1P4_dup36|chr1:50938488-50939832:-|2.3975358562385187|0.0225873764258889|6.73|151.0|6|1|sense;L1MB2_dup5656|chr11:59586202-59587218:+|1.524532185571687|0.2075162872167227|2.88|151.0|25|3|sense;L1MB7_dup2843|chr2:127347021-127347808:+|1.1413704263503626|0.0110736859737708|6.69|151.0|15|2|sense L1P4_dup36|chr1:50938488-50939832:-|2.3975358562385187|0.0225873764258889|6.73|151.0|6|1|sense L1P4_dup36|chr1:50938488-50939832:-|2.3975358562385187|0.0225873764258889|6.73|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.3127136230469 2 472.312961 942.611368 0.013707 6.474E-06 -0.30959 -0.00014622 -0.29588 -0.00013975 472.31272718181333 65.999 0.82065 69.258 68.805 69.626 3.2588 80 47 3 0 0 0 0.82752 1 15874 15874 22.736 0 1 272120 44559 10263 28166 28178 51293 51293 0.13776692005137647 TLLKIIKA 8 Unmodified _TLLKIIKA_ 0 0 0 REV__ENST00000530536.5_1_6:133081833-133081896:-|nuORF REV__ENST00000530536.5_1_6:133081833-133081896:-|nuORF MSMS UPN47_class_I_Rep_3 4 450.3180236816406 2 450.318046 898.621539 NaN NaN NaN NaN NaN NaN NaN 41.635 1 44.872 44.372 45.372 3.2372 0 0 0 0.39819 1 8464 8464 8.5933 0 1 + 44560 22841 28167 28179 51294 51294 0.1681729973038273 TLLKLPVSL 9 Unmodified _TLLKLPVSL_ 0 0 0 L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|174|2|anti-sense;L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|315|3|anti-sense;L1PA4_dup5878|chr8:47416625-47422756:-|1.768390925550548|0.0316828952312387|5.8|151.0|265|2|anti-sense;L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|321|3|anti-sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|204|1|anti-sense;L1PA5_dup1709|chr3:12639041-12641381:+|1.7677307440238137|0.020356253028721|6.44|151.0|92|1|anti-sense;L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|171|2|anti-sense;L1P1_dup1547|chr8:47500001-47505742:-|2.946594612289576|0.2010030797249618|3.87|151.0|186|1|anti-sense L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|174|2|anti-sense L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|174|2|anti-sense MSMS UPN48_class_I_Rep_1 5 492.3287353515625 2 492.328611 982.642668 NaN NaN NaN NaN NaN NaN NaN 65.982 1 69.434 68.934 69.934 3.4516 0 0 0 0.38916 1 15053 15053 3.2813 0 1 44561 13468 28168 28180 51295 51295 0.1506526503923169 TLLKLPVSL 9 Unmodified _TLLKLPVSL_ 0 0 0 L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|174|2|anti-sense;L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|315|3|anti-sense;L1PA4_dup5878|chr8:47416625-47422756:-|1.768390925550548|0.0316828952312387|5.8|151.0|265|2|anti-sense;L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|321|3|anti-sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|204|1|anti-sense;L1PA5_dup1709|chr3:12639041-12641381:+|1.7677307440238137|0.020356253028721|6.44|151.0|92|1|anti-sense;L1PA4_dup7537|chrX:101434653-101438282:-|1.3873536081814568|0.2474324271627374|2.49|151.0|171|2|anti-sense;L1P1_dup1547|chr8:47500001-47505742:-|2.946594612289576|0.2010030797249618|3.87|151.0|186|1|anti-sense L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|174|2|anti-sense L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|174|2|anti-sense MSMS UPN48_class_I_Rep_2 6 492.3282470703125 2 492.328611 982.642668 NaN NaN NaN NaN NaN NaN NaN 65.718 1 69.204 68.704 69.704 3.4866 0 0 0 0.34878 1 14958 14958 8.1555 0 1 44562 13468 28168 28180 51296 51296 0.1506526503923169 TLLKRPKG 8 Unmodified _TLLKRPKG_ 0 0 0 REV__ENST00000456494.1_3_X:148730977-148731121:-|nuORF REV__ENST00000456494.1_3_X:148730977-148731121:-|nuORF MSMS UPN47_class_I_Rep_2 3 456.7428894042969 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 39.003 1 42.382 41.882 42.882 3.3785 0 0 0 0.40404 1 7613 7613 5.2307 0 1 + 44563 22412 28169 28181 51297 51297 0.1323036078504174 TLLKRRHLCGL 11 Unmodified _TLLKRRHLCGL_ 0 0 0 L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|45|1|sense L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|45|1|sense L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|45|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.2674865722656 3 437.267691 1308.78124 -0.053714 -2.3488E-05 0.23123 0.00010111 0.17752 7.7623E-05 437.2676250984206 48.906 1.1197 52.43 51.535 52.655 3.5239 168 77 3 0 0 0 0.66092 1 9835 9835 2.2527 0.32522 1 547060 44564 14873 28170 28182 51298 51298 0.139204847359224 TLLLGALTAL 10 Unmodified _TLLLGALTAL_ 0 0 0 REV__nc|ENSG00000173482|P28827|PTPRM REV__nc|ENSG00000173482|P28827|PTPRM MULTI-MSMS UPN47_class_I_Rep_3 4 493.8197937011719 2 493.318243 984.621933 0.21187 0.00010452 -1.0144 -0.00050043 -0.80255 -0.00039591 493.3175155335469 69.661 0.087791 72.865 72.839 72.927 3.2044 7 5 2 0 0 0 0.54466 1 17002 17002 6.2058 0 1 50569 + 44565 20485 28171 28183 51299 51299 0.12900674659545075 TLLLGRPAF 9 Unmodified _TLLLGRPAF_ 0 0 0 REV__ENSG00000155265|ENST00000370602|GOLGA7B REV__ENSG00000155265|ENST00000370602|GOLGA7B MULTI-SECPEP UPN47_class_I_Rep_2 3 494.7176513671875 2 494.302927 986.591301 0.25943 0.00012824 0.12811 6.3323E-05 0.38753 0.00019156 494.30297168159905 62.752 0.30374 66.007 65.836 66.14 3.2558 25 17 2 0 0 0 0.12157 1 14866 14866 6.2058 0 1 49277 + 44566 19763 28172 28184 51300 51300 0.09746941065179726 TLLLKITD 8 Unmodified _TLLLKITD_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 458.7880554199219 2 458.789318 915.564084 -0.10663 -4.892E-05 -0.97576 -0.00044767 -1.0824 -0.00049659 458.78806762161776 85.836 0.22002 89.208 89.083 89.303 3.3716 34 23 2 0 0 0 0.82752 1 21520 21520 0.69038 0 1 784160 44567 10293 28173 28185 51301 51301 0.10292412734122536 TLLLKITD 8 Unmodified _TLLLKITD_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 458.7880554199219 2 458.789318 915.564084 0.17288 7.9317E-05 -1.0598 -0.00048624 -0.88695 -0.00040693 458.7880262738444 84.518 0.24191 88.212 88.133 88.375 3.6937 50 31 2 0 0 0 0.82752 1 20136 20136 0.69038 0 1 354190 44568 10293 28173 28185 51302 51302 0.10292412734122536 TLLLKITD 8 Unmodified _TLLLKITD_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|78|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 458.789318 915.564084 0.20864 9.5724E-05 -3.2873 -0.0015082 -3.0787 -0.0014125 458.78776427153434 89.094 0.02269 89.094 89.078 89.101 0 -0.05691 -0.00022903 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 66232 44569 10293 28173 28185 0.10292412734122536 TLLLLHYI 8 Unmodified _TLLLLHYI_ 0 0 0 L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.3053894042969 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 68.456 1 71.821 71.321 72.321 3.3646 0 0 0 0.4032 1 16527 16527 6.3541 0 1 44570 13463 28174 28186 51303 51303 0.10788709350697445 TLLLLHYI 8 Unmodified _TLLLLHYI_ 0 0 0 L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.30548095703125 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 68.6 1 71.965 71.465 72.465 3.3646 0 0 0 0.39408 1 16572 16572 10.183 0 1 44571 13463 28174 28186 51304 51304 0.10788709350697445 TLLLLHYI 8 Unmodified _TLLLLHYI_ 0 0 0 L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.3057861328125 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 78.753 1 82.198 81.698 82.698 3.4456 0 0 0 0.40364 1 19591 19591 5.7604 0 1 44572 13463 28174 28186 51305 51305 0.10788709350697445 TLLLLHYI 8 Unmodified _TLLLLHYI_ 0 0 0 L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense L1MEj_dup1984|chr15:49868200-49868718:+|4.928968709548254|0.1318251813549465|5.22|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.3052062988281 2 493.307678 984.600803 NaN NaN NaN NaN NaN NaN NaN 68.981 1 72.178 71.678 72.678 3.1977 0 0 0 0.39408 1 16794 16794 10.183 0 1 44573 13463 28174 28186 51306 51306 0.10788709350697445 TLLLLLLL 8 Unmodified _TLLLLLLL_ 0 0 0 ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1;L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|135|1|anti-sense;CON__P50448;ENSG00000161911|ENST00000426005|TREML1;nc|ENSG00000161911|Q86YW5-3|TREML1;L1MB7_dup4964|chr3:171634773-171635965:-|1.5447864696543567|0.0735510956343897|4.39|151.0|66|2|anti-sense;nc|ENSG00000161911|Q86YW5-2|TREML1;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000161610|ENST00000293330|HCRT;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;CON__ENSEMBL:ENSBTAP00000024146 ENSG00000173662|ENST00000333172|TAS1R1;REV__ENSG00000125810|ENST00000246006|CD93 ENSG00000173662|ENST00000333172|TAS1R1 MSMS UPN47_class_I_Rep_1 2 456.33233642578125 2 456.330622 910.646691 NaN NaN NaN NaN NaN NaN NaN 87.792 1 91.429 90.929 91.929 3.6372 0 0 0 0.40798 1 21944 21944 0 0 1 44574 4642;18841 28175 28187 51307 51307 0.18779354532955495 TLLLLLWI 8 Unmodified _TLLLLLWI_ 0 0 0 REV__ENSG00000170044|ENST00000466937|ZPLD1 REV__ENSG00000170044|ENST00000466937|ZPLD1 MSMS UPN48_class_I_Rep_3 7 493.3063659667969 2 492.828246 983.64194 NaN NaN NaN NaN NaN NaN NaN 65.41 1 68.917 68.417 69.417 3.5077 0 0 0 0.40404 1 14779 14779 5.2307 0 1 + 44575 20346 28176 28188 51308 51308 0.1494647039019128 TLLNKAADKG 10 Unmodified _TLLNKAADKG_ 0 0 0 ENSG00000158545|ENST00000301011|ZC3H18 ENSG00000158545|ENST00000301011|ZC3H18 ENSG00000158545|ENST00000301011|ZC3H18 MSMS UPN48_class_I_Rep_2 6 515.799560546875 2 515.798206 1029.58186 NaN NaN NaN NaN NaN NaN NaN 28.884 1 32.515 32.015 33.015 3.6311 0 0 0 0.53105 1 4031 4031 7.609 0.31972 1 44576 3804 28177 28189 51309 51309 0.06825127988986424 TLLNVIKSV 9 Unmodified _TLLNVIKSV_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ITPR2|p.D2468Efs*23|1|0.04|ENSG00000123104|chr12:26400254-26400254|A/-|frameshift_variant;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000538984.1_1_12:26564247-26572125:-|nuORF ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MSMS UPN46_class_I_Rep_3 1 493.8151550292969 2 493.815867 985.617182 NaN NaN NaN NaN NaN NaN NaN 68.893 1 68.893 68.393 69.393 0 0 0 0 0.098956 1 15757 15757 24.882 3.2914 1 44577 2407 28178 28190 51310 51310 0.12379790516808953 TLLQIELL 8 Unmodified _TLLQIELL_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 65.61 1 68.866 68.366 69.366 3.2556 0 0 0 0.40364 1 15710 15710 5.7604 0 1 + 44578 20041 28179 28191 51311 51311 0.10660699251184269 TLLQLVITLIH 11 Unmodified _TLLQLVITLIH_ 0 0 0 REV__Tigger3a_dup797|chr2:177316523-177316871:+|1.16524871003731|0.077462245143399|3.91|151.0|7|2|sense REV__Tigger3a_dup797|chr2:177316523-177316871:+|1.16524871003731|0.077462245143399|3.91|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 632.4080810546875 2 632.405381 1262.79621 NaN NaN NaN NaN NaN NaN NaN 76.998 1 80.61 80.11 81.11 3.6116 0 0 0 0.38417 1 18201 18201 1.3295 0 1 + 44579 32723 28180 28192 51312 51312 0.17532255084893222 TLLRIRVRGLR 11 Unmodified _TLLRIRVRGLR_ 0 0 0 ENST00000518385.5_3_8:97506087-97614626:+|nuORF;ENST00000302190.8_1_8:97506012-97605724:+|nuORF ENST00000518385.5_3_8:97506087-97614626:+|nuORF ENST00000518385.5_3_8:97506087-97614626:+|nuORF MSMS UPN48_class_I_Rep_2 6 451.6366271972656 3 451.636883 1351.88882 NaN NaN NaN NaN NaN NaN NaN 37.648 1 41.364 40.864 41.864 3.7164 0 0 0 0.38417 1 6466 6466 0.094841 0 1 44580 6078 28181 28193 51313 51313 0.22695197661641942 TLLRKKRSKI 10 Unmodified _TLLRKKRSKI_ 0 0 0 L1M5_dup44991|chr15:51556791-51557911:+|1.2983112994758848|0.0248211076742161|5.71|151.0|39|3|sense L1M5_dup44991|chr15:51556791-51557911:+|1.2983112994758848|0.0248211076742161|5.71|151.0|39|3|sense L1M5_dup44991|chr15:51556791-51557911:+|1.2983112994758848|0.0248211076742161|5.71|151.0|39|3|sense MSMS UPN46_class_I_Rep_3 1 621.9224853515625 2 621.922064 1241.82957 NaN NaN NaN NaN NaN NaN NaN 78.703 1 78.703 78.203 79.203 0 0 0 0 0.53105 1 18448 18448 0 0 1 44581 9174 28182 28194 51314 51314 0.21833301647461667 TLLRPVHF 8 Unmodified _TLLRPVHF_ 0 0 0 L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7958068847656 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.635 1 53.159 52.659 53.659 3.5246 0 0 0 0.39819 1 10052 10052 8.5933 0 1 44582 9202 28183 28195 51315 51315 0.08446074267999393 TLLRPVHF 8 Unmodified _TLLRPVHF_ 0 0 0 L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_1 5 491.79595947265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.897 1 53.422 52.922 53.922 3.5246 0 0 0 0.39819 1 10133 10133 8.5933 0 1 44583 9202 28183 28195 51316 51316 0.08446074267999393 TLLRPVHF 8 Unmodified _TLLRPVHF_ 0 0 0 L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_2 6 491.79541015625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 65.144 1 68.623 68.123 69.123 3.4792 0 0 0 0.4044 1 14786 14786 4.756 2.1785 1 44584 9202 28183 28195 51317 51317 0.08446074267999393 TLLRPVHF 8 Unmodified _TLLRPVHF_ 0 0 0 L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7956237792969 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.684 1 53.305 52.805 53.805 3.621 0 0 0 0.39819 1 10000 10000 8.5933 0 1 44585 9202 28183 28195 51318 51318 0.08446074267999393 TLLRPVHF 8 Unmodified _TLLRPVHF_ 0 0 0 L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense L1M5_dup5443|chr2:68198510-68198974:-|1.0765538810507542|0.0175005622687556|5.94|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_3 7 491.7960510253906 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.837 1 53.458 52.958 53.958 3.621 0 0 0 0.39819 1 10047 10047 8.5933 0 1 44586 9202 28183 28195 51319 51319 0.08446074267999393 TLLRSPKR 8 Unmodified _TLLRSPKR_ 0 0 0 ENSG00000106868.17,SUSD1,chr9,-,I14.1,112078725,112080073|24|6.73|2|intron;ENSG00000106868.17,SUSD1,chr9,-,I16.1,112058687,112062936|23|10.62|2|intron;ENSG00000106868.17,SUSD1,chr9,-,I14.1,112078725,112080073|24|6.73|5|intron;ENSG00000106868.17,SUSD1,chr9,-,I14.1,112078725,112080073|24|6.73|1|intron;ENSG00000106868.17,SUSD1,chr9,-,I17.1,112052439,112058427|34|10.82|2|intron;ENSG00000106868.17,SUSD1,chr9,-,I14.1,112078725,112080073|24|6.73|6|intron;ENSG00000106868.17,SUSD1,chr9,-,I16.1,112058687,112062936|23|10.62|1|intron;ENSG00000106868.17,SUSD1,chr9,-,I16.1,112058687,112062936|23|10.62|3|intron;ENSG00000106868.17,SUSD1,chr9,-,I17.1,112052439,112058427|34|10.82|1|intron;nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1 ENSG00000106868.17,SUSD1,chr9,-,I14.1,112078725,112080073|24|6.73|2|intron ENSG00000106868.17,SUSD1,chr9,-,I14.1,112078725,112080073|24|6.73|2|intron MSMS UPN47_class_I_Rep_1 2 485.81146240234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.761 1 72.125 71.625 72.625 3.3646 0 0 0 0.40659 1 16621 16621 1.8442 0 1 44587 1804 28184 28196 51320 51320 0.12232861670997863 TLLSIFTLLWF 11 Unmodified _TLLSIFTLLWF_ 0 0 0 REV__L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|115|3|anti-sense REV__L1ME2_dup1553|chr2:99716958-99718753:-|2.8002981479482134|0.0467924193134729|5.9|150.0|115|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.2674865722656 3 451.93208 1352.77441 0.17075 7.7167E-05 1.1243 0.00050811 1.2951 0.00058528 451.93259024839887 91.82 0.29845 95.526 95.473 95.772 3.7053 61 37 2 0 0 0 0.68132 1 22911 22911 0.40827 0 1 263800 + 44588 27836 28185 28197 51321 51321 0.1121345033632224 TLLSLPRLL 9 Unmodified _TLLSLPRLL_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 513.33984375 2 513.33951 1024.66447 NaN NaN NaN NaN NaN NaN NaN 72.82 1 76.293 75.793 76.793 3.4732 0 0 0 0.34878 1 17117 17117 8.1555 0 1 44589 8450 28186 28198 51322 51322 0.15312069787796645 TLLSLPRLL 9 Unmodified _TLLSLPRLL_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense MSMS UPN48_class_I_Rep_1 5 513.339599609375 2 513.33951 1024.66447 NaN NaN NaN NaN NaN NaN NaN 72.958 1 76.431 75.931 76.931 3.4732 0 0 0 0.3824 1 17160 17160 4.897 0 1 44590 8450 28186 28198 51323 51323 0.15312069787796645 TLLSLPRLL 9 Unmodified _TLLSLPRLL_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.796875 2 513.33951 1024.66447 0.32279 0.0001657 -0.26011 -0.00013353 0.062674 3.2173E-05 513.339240358195 72.698 0.17139 76.263 76.198 76.37 3.5645 18 13 2 0 0 0 0.26468 2 17053 17031;17053 16.149 0 1 55071 44591 8450 28186 28198 51324;51325 51325 0.15312069787796645 TLLSLPRLL 9 Unmodified _TLLSLPRLL_ 0 0 0 HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense HUERS-P3-int_dup54|chr2:69796455-69798802:-|2.677703966965655|0.262173336535806|3.35|150.0|29|2|sense MSMS UPN48_class_I_Rep_3 7 513.3392944335938 2 513.33951 1024.66447 NaN NaN NaN NaN NaN NaN NaN 72.565 1 76.102 75.602 76.602 3.5373 0 0 0 0.35904 1 16922 16922 7.609 0 1 44592 8450 28186 28198 51326 51326 0.15312069787796645 TLLSTFCDSN 10 Unmodified _TLLSTFCDSN_ 0 0 0 REV__L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|95|2|anti-sense REV__L1ME1_dup29323|chr19:51221287-51222854:+|1.7794656580421395|0.2081065970250896|3.1|151.0|95|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.7488403320312 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 87.682 1 87.682 87.182 88.182 0 0 0 0 0.53105 1 21023 21023 1.1933 0.39971 1 + 44593 27740 28187 28199 51327 51327 -0.0601880763324516 TLLSTSKII 9 Unmodified _TLLSTSKII_ 0 0 0 L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|15|3|sense L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|15|3|sense L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 488.2906188964844 2 488.307875 974.601197 NaN NaN NaN NaN NaN NaN NaN 107.91 1 111.54 111.04 112.04 3.6313 0 0 0 0.37476 1 26048 26048 6.7232 0 1 44594 13533 28188 28200 51328 51328 0.11288084279908617 TLLTAIVKL 9 Unmodified _TLLTAIVKL_ 0 0 0 nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.K538*|1|0.14|ENSG00000006125|chr17:35650603-35650604|-/A|frameshift_variant nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010-3|AP2B1 MULTI-MSMS UPN47_class_I_Rep_1 2 486.3285827636719 2 486.328611 970.642668 0.13099 6.3706E-05 -0.20139 -9.7943E-05 -0.070399 -3.4237E-05 486.3283835968824 73.097 0.58009 76.483 76.069 76.649 3.3861 60 38 2 0 0 0 0.19147 1 17846 17846 21.537 0 1 522530 44595 714 28189 28201 51329 51329 0.15617265039236372 TLLTAIVKL 9 Unmodified _TLLTAIVKL_ 0 0 0 nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.K538*|1|0.14|ENSG00000006125|chr17:35650603-35650604|-/A|frameshift_variant nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010-3|AP2B1 MULTI-MSMS UPN47_class_I_Rep_1 2 486.3428955078125 2 486.328611 970.642668 0.13341 6.4881E-05 -0.34177 -0.00016621 -0.20836 -0.00010133 486.32832832144254 73.418 0.26715 76.804 76.633 76.9 3.3861 32 23 2 0 0 0 0.24936 1 18012 18012 17.113 0 1 59564 44596 714 28189 28201 51330 51330 0.15617265039236372 TLLTAIVKL 9 Unmodified _TLLTAIVKL_ 0 0 0 nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.K538*|1|0.14|ENSG00000006125|chr17:35650603-35650604|-/A|frameshift_variant nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010-3|AP2B1 MULTI-MSMS UPN47_class_I_Rep_2 3 486.3284606933594 2 486.328611 970.642668 0.23608 0.00011481 -0.35015 -0.00017029 -0.11408 -5.5479E-05 486.32833409613244 73.207 0.58378 76.504 76.133 76.717 3.2971 63 46 2 0 0 0 0.14216 1 18001 18001 26.268 0 1 222400 44597 714 28189 28201 51331 51331 0.15617265039236372 TLLTNIQGL 9 Unmodified _TLLTNIQGL_ 0 0 0 nc|ENSG00000126733|Q96NX9-3|DACH2;nc|ENSG00000126733|Q96NX9-4|DACH2;nc|ENSG00000276644|Q9UI36-4|DACH1;nc|ENSG00000276644|Q9UI36-3|DACH1;nc|ENSG00000126733|Q96NX9-2|DACH2;ENSG00000126733|ENST00000373125|DACH2;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1 nc|ENSG00000126733|Q96NX9-3|DACH2 nc|ENSG00000126733|Q96NX9-3|DACH2 MSMS UPN47_class_I_Rep_1 2 486.7896728515625 2 486.78985 971.565146 NaN NaN NaN NaN NaN NaN NaN 71.905 1 75.28 74.78 75.78 3.3751 0 0 0 0.32573 1 17560 17560 9.3831 2.0939 1 44598 2548 28190 28202 51332 51332 0.07822627103041668 TLLTSPLPA 9 Unmodified _TLLTSPLPA_ 0 0 0 REV__ENSG00000142178|ENST00000270162|SIK1 REV__ENSG00000142178|ENST00000270162|SIK1 MSMS UPN47_class_I_Rep_1 2 456.7720947265625 2 456.773668 911.532783 NaN NaN NaN NaN NaN NaN NaN 78.268 1 81.697 81.197 82.197 3.4289 0 0 0 0.39428 1 19453 19453 2.0598 0.21551 1 + 44599 19398 28191 28203 51333 51333 0.07347839700037184 TLLVAKWI 8 Unmodified _TLLVAKWI_ 0 0 0 L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|63|3|anti-sense L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|63|3|anti-sense L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 472.3121643066406 2 472.302396 942.590239 NaN NaN NaN NaN NaN NaN NaN 65.883 1 69.241 68.741 69.741 3.3576 0 0 0 0.39819 1 15745 15745 8.5933 0 1 44600 11524 28192 28204 51334 51334 0.11664726696278649 TLLVAKWI 8 Unmodified _TLLVAKWI_ 0 0 0 L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|63|3|anti-sense L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|63|3|anti-sense L1MC4_dup7814|chr5:81456828-81457665:+|1.1075596014254407|0.0520836116139649|4.41|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 472.3127136230469 2 472.302396 942.590239 NaN NaN NaN NaN NaN NaN NaN 66.023 1 69.282 68.782 69.782 3.2588 0 0 0 0.39819 1 15836 15836 8.5933 0 1 44601 11524 28192 28204 51335 51335 0.11664726696278649 TLLVVVPKL 9 Unmodified _TLLVVVPKL_ 0 0 0 ENST00000521671.1_1_8:104064982-104075474:+|nuORF;ENSG00000155097|ENST00000518738|ATP6V1C1 ENST00000521671.1_1_8:104064982-104075474:+|nuORF ENST00000521671.1_1_8:104064982-104075474:+|nuORF MSMS UPN47_class_I_Rep_2 3 491.3392333984375 2 491.338978 980.663404 NaN NaN NaN NaN NaN NaN NaN 70.561 1 73.844 73.344 74.344 3.2828 0 0 0 0.22485 1 17200 17200 14.838 4.0143 1 44602 3694 28193 28205 51336 51336 0.17229855418895568 TLLWIRGAP 9 Unmodified _TLLWIRGAP_ 0 0 0 REV__L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|46|3|sense REV__L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|46|3|sense MSMS UPN48_class_I_Rep_1 5 513.8094482421875 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 45.146 1 48.663 48.163 49.163 3.5162 0 0 0 0.38478 1 8676 8676 4.3292 0.73274 1 + 44603 25274 28194 28206 51337 51337 0.0904234343945518 TLLYLFFL 8 Unmodified _TLLYLFFL_ 0 0 0 REV__L1MA1_dup2069|chr9:34244147-34244464:-|1.0661908179785824|0.1552871965659822|2.78|151.0|14|2|anti-sense REV__L1MA1_dup2069|chr9:34244147-34244464:-|1.0661908179785824|0.1552871965659822|2.78|151.0|14|2|anti-sense MSMS UPN46_class_I_Rep_3 1 515.3050537109375 2 515.304604 1028.59466 NaN NaN NaN NaN NaN NaN NaN 91.414 1 91.414 90.914 91.914 0 0 0 0 0.40738 1 22081 22081 0.79363 0 1 + 44604 24766 28195 28207 51338 51338 0.0815019111919355 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(54)EEVLLL 0 0 1 ENST00000479757.1_1_1:150667092-150667320:-|nuORF;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3 ENST00000479757.1_1_1:150667092-150667320:-|nuORF ENST00000479757.1_1_1:150667092-150667320:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 538.798828125 2 538.799026 1075.5835 0.45181 0.00024343 0.48312 0.0002603 0.93493 0.00050374 538.7992132685567 81.175 0.89613 84.499 84.194 85.09 3.3231 144 100 2 0 0 0 0.038568 3 20322 20255;20289;20322 53.576 9.7173 1 592000 44605 2044 28196 28208 51339;51340;51341 51341 66 0.0487300096274339 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(42)EEVLLL 0 0 1 ENST00000479757.1_1_1:150667092-150667320:-|nuORF;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3 ENST00000479757.1_1_1:150667092-150667320:-|nuORF ENST00000479757.1_1_1:150667092-150667320:-|nuORF MSMS UPN47_class_I_Rep_3 4 538.79833984375 2 538.799026 1075.5835 NaN NaN NaN NaN NaN NaN NaN 80.613 1 83.923 83.423 84.423 3.309 0 0 0 0.036183 1 20165 20165 42.095 6.0504 1 44606 2044 28196 28208 51342 51342 66 0.0487300096274339 TLMNLHVYI 9 Oxidation (M) _TLM(Oxidation (M))NLHVYI_ TLM(1)NLHVYI TLM(54)NLHVYI 0 0 1 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS UPN47_class_I_Rep_1 2 560.798583984375 2 560.296985 1118.57942 0.39955 0.00022387 -0.62039 -0.0003476 -0.22083 -0.00012373 560.29677060387 58.324 0.44411 61.751 61.412 61.856 3.4272 61 28 3 0 0 0 0.037922 1 13423 13423 53.833 21.527 1 163530 44607 1708 28197 28209 51343 51343 53 0.024869562596677497 TLNEQDQF 8 Unmodified _TLNEQDQF_ 0 0 0 REV__ENST00000309334.5_2_10:63852127-63852166:+|nuORF REV__ENST00000309334.5_2_10:63852127-63852166:+|nuORF MSMS UPN47_class_I_Rep_1 2 497.72686767578125 2 497.727446 993.44034 NaN NaN NaN NaN NaN NaN NaN 34.221 1 37.907 37.407 38.407 3.6859 0 0 0 0.40738 1 6129 6129 0.79363 0 1 + 44608 21699 28198 28210 51344 51344 -0.05664290104141401 TLNERFTSY 9 Unmodified _TLNERFTSY_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF;ENST00000534269.5_1_6:136590404-136595119:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS UPN46_class_I_Rep_3 1 565.7771606445312 2 565.77747 1129.54039 0.42315 0.00023941 0.041806 2.3653E-05 0.46496 0.00026306 565.7776136337606 46.005 0.43864 46.005 45.852 46.291 0 65 47 2 0 0 0 0.16799 1 9423 9423 23.79 6.6769 1 157200 44609 832 28199 28211 51345 51345 -0.019200527703105763 TLNGRLLR 8 Unmodified _TLNGRLLR_ 0 0 0 REV__L1MA3_dup1217|chr2:210115977-210117666:+|1.2748278234702763|0.0609960049824071|4.39|150.0|39|2|sense REV__L1MA3_dup1217|chr2:210115977-210117666:+|1.2748278234702763|0.0609960049824071|4.39|150.0|39|2|sense MSMS UPN47_class_I_Rep_2 3 471.7955322265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 66.231 1 69.49 68.99 69.99 3.2588 0 0 0 0.39819 1 15899 15899 8.5933 2.8329 1 + 44610 24964 28200 28212 51346 51346 0.10392288636910507 TLNGWGHPVI 10 Unmodified _TLNGWGHPVI_ 0 0 0 REV__THE1B_dup17148|chr12:104509076-104509400:+|1.8941990391201824|0.0034293955192508|9.11|151.0|13|1|anti-sense REV__THE1B_dup17148|chr12:104509076-104509400:+|1.8941990391201824|0.0034293955192508|9.11|151.0|13|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.7955322265625 2 547.293091 1092.57163 0.40084 0.00021938 1.3236 0.00072441 1.7245 0.00094379 547.7954275856148 55.889 0.72522 59.067 58.742 59.467 3.1779 83 49 3 0 0 0 0.55983 1 12755 12755 3.9444 0.94915 1 128410 + 44611 32229 28201 28213 51347 51347 0.029045650544276214 TLNKRNQL 8 Unmodified _TLNKRNQL_ 0 0 0 L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|19|3|sense L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|19|3|sense L1ME3A_dup6987|chr7:99133437-99133994:+|1.6688204107490856|0.0143705280733087|6.86|151.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 493.8082275390625 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 68.485 1 71.849 71.349 72.349 3.3646 0 0 0 0.40404 1 16536 16536 5.2307 0 1 44612 12684 28202 28214 51348 51348 0.07351680911654057 TLNNLEIFL 9 Unmodified _TLNNLEIFL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS UPN47_class_I_Rep_1 2 538.8036499023438 2 538.802957 1075.59136 0.47304 0.00025487 -0.31882 -0.00017178 0.15422 8.3092E-05 538.8026585684895 87.48 0.33358 91.117 90.851 91.185 3.6372 86 38 3 0 0 0 0.19147 1 21810 21810 21.537 0 1 300390 44613 2159 28203 28215 51349 51349 0.05658896274530889 TLNNLEIFL 9 Unmodified _TLNNLEIFL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS UPN47_class_I_Rep_3 4 538.8031005859375 2 538.802957 1075.59136 0.46789 0.0002521 -0.4797 -0.00025846 -0.011813 -6.3651E-06 538.8026231659762 87.714 0.27329 91.101 90.933 91.206 3.3873 71 31 3 0 0 0 0.13244 2 21962 21962;21996 27.629 0 1 227100 44614 2159 28203 28215 51350;51351 51350 0.05658896274530889 TLNNLEIFL 9 Unmodified _TLNNLEIFL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS UPN47_class_I_Rep_3 4 538.8029174804688 2 538.802957 1075.59136 0.46827 0.00025231 -0.1496 -8.0607E-05 0.31867 0.0001717 538.8027442012921 88.013 0.14417 91.4 91.301 91.445 3.3873 24 16 2 0 0 0 0.13244 1 22062 22062 27.629 0 1 311090 44615 2159 28203 28215 51352 51352 0.05658896274530889 TLPAALLFPL 10 Unmodified _TLPAALLFPL_ 0 0 0 ENST00000395340.5_1_20:61521863-61522052:-|nuORF ENST00000395340.5_1_20:61521863-61522052:-|nuORF ENST00000395340.5_1_20:61521863-61522052:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.328857421875 2 528.328611 1054.64267 0.32257 0.00017042 -0.19638 -0.00010375 0.12619 6.667E-05 528.328384232242 72.418 0.6767 75.798 75.477 76.153 3.3799 80 51 2 0 0 0 0.54078 1 17668 17668 6.7232 0 1 112290 44616 6553 28204 28216 51353 51353 0.11753265039214966 TLPAASQKRK 10 Unmodified _TLPAASQKRK_ 0 0 0 nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF nc|ENSG00000171634|Q12830-4|BPTF nc|ENSG00000171634|Q12830-4|BPTF MSMS UPN48_class_I_Rep_1 5 550.3294677734375 2 550.332747 1098.65094 NaN NaN NaN NaN NaN NaN NaN 63.946 1 67.404 66.904 67.904 3.4578 0 0 0 0.53105 1 14436 14436 3.5965 0.31518 1 44617 4535 28205 28217 51354 51354 0.10556212008555121 TLPFHVLR 8 Unmodified _TLPFHVLR_ 0 0 0 ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron;ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|9|intron;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron ENSG00000115760.14,BIRC6,chr2,+,I24.1,32463382,32464508|25|8.45|10|intron MSMS UPN48_class_I_Rep_3 7 491.79534912109375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 41.76 1 45.406 44.906 45.906 3.6458 0 0 0 0.40625 1 7579 7579 2.3027 0 1 44618 2140 28206 28218 51355 51355 0.08446074267988024 TLPHTYLAL 9 Unmodified _TLPHTYLAL_ 0 0 0 ENSG00000111913.20,RIPOR2,chr6,-,I4.1,24931998,24935837|35|14.89|1|intron ENSG00000111913.20,RIPOR2,chr6,-,I4.1,24931998,24935837|35|14.89|1|intron ENSG00000111913.20,RIPOR2,chr6,-,I4.1,24931998,24935837|35|14.89|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 514.7925415039062 2 514.792392 1027.57023 0.22119 0.00011387 0.0028714 1.4782E-06 0.22406 0.00011535 514.7922197281378 66.791 1.1614 70.153 69.624 70.786 3.3611 127 87 3 0 0 0 0.36392 1 16093 16093 10.074 1.9184 1 266980 44619 1993 28207 28219 51356 51356 0.05754930965645144 TLPKKQPQY 9 Unmodified _TLPKKQPQY_ 0 0 0 REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|130|3|sense REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|130|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 553.24560546875 2 551.816399 1101.61824 0.57471 0.00031713 -0.36631 -0.00020214 0.2084 0.000115 551.8162003090239 59.316 0.95636 62.803 62.223 63.18 3.4868 133 64 3 0 0 0 0.48643 1 12941 12941 2.0598 0 1 342830 + 44620 29430 28208 28220 51357 51357 0.07150004885693306 TLPLLSRLEWG 11 Unmodified _TLPLLSRLEWG_ 0 0 0 REV__ENST00000552551.5_2_12:53343373-53343466:-|nuORF REV__ENST00000552551.5_2_12:53343373-53343466:-|nuORF MSMS UPN48_class_I_Rep_3 7 642.8697509765625 2 642.869163 1283.72377 NaN NaN NaN NaN NaN NaN NaN 68.955 1 72.464 71.964 72.964 3.5094 0 0 0 0.38417 1 15849 15849 4.5289 0 1 + 44621 22970 28209 28221 51358 51358 0.09325921011304672 TLPLQKSL 8 Unmodified _TLPLQKSL_ 0 0 0 L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|34|2|sense L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|34|2|sense L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.2814025878906 2 450.28166 898.548768 0.023795 1.0714E-05 -0.29819 -0.00013427 -0.2744 -0.00012356 450.2814065894679 41.813 1.2037 45.321 44.932 46.135 3.5079 279 118 3 0 0 0 0.82752 1 7613 7613 44.407 0 1 1238200 44622 8989 28210 28222 51359 51359 0.09543545936935516 TLPLVIFA 8 Unmodified _TLPLVIFA_ 0 0 0 REV__L1MB7_dup18957|chr16:29189250-29190505:-|3.0726642021656945|0.0833137274552517|5.2|151.0|73|3|anti-sense REV__L1MB7_dup18957|chr16:29189250-29190505:-|3.0726642021656945|0.0833137274552517|5.2|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2677001953125 2 437.275847 872.537141 NaN NaN NaN NaN NaN NaN NaN 51.401 1 54.926 54.426 55.426 3.5246 0 0 0 0.40738 1 10598 10598 0.79363 0 1 + 44623 26191 28211 28223 51360 51360 0.09577348913592232 TLPLVYVDPG 10 Unmodified _TLPLVYVDPG_ 0 0 0 REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK MULTI-SECPEP UPN46_class_I_Rep_3 1 537.2706909179688 2 537.297507 1072.58046 0.28092 0.00015094 0.14889 8E-05 0.42981 0.00023094 537.2991225903613 53.428 0.15562 53.428 53.359 53.515 0 22 15 2 0 0 0 0.84575 1 11488 11488 6.7232 0 1 221440 + 44624 20733 28212 28224 51361 51361 0.04707493900218651 TLPPELLLS 9 Unmodified _TLPPELLLS_ 0 0 0 MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|7|2|sense MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|7|2|sense MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|7|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 491.7955322265625 2 491.794601 981.574648 0.22878 0.00011251 3.8808 0.0019086 4.1096 0.0020211 491.7956533172826 53.146 0.12463 53.146 53.098 53.223 0 18 11 2 0 0 0 0.46869 1 11421 11421 3.9444 0 1 186180 44625 15806 28213 28225 51362 51362 0.08312395388577443 TLPPELLLS 9 Unmodified _TLPPELLLS_ 0 0 0 MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|7|2|sense MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|7|2|sense MER1A_dup3065|chr19:48227878-48228396:+|1.7865740937156267|0.1168941630598186|3.93|151.0|7|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 491.794601 981.574648 0.20503 0.00010083 3.0231 0.0014868 3.2282 0.0015876 491.79591313091345 49.348 1.3896 53.065 52.356 53.746 3.7175 -0.040243 -6.7027E-06 NaN 3.9444 140 90 2 NaN NaN NaN NaN 0 NaN NaN 0 326000 44626 15806 28213 28225 0.08312395388577443 TLPPMLIK 8 Unmodified _TLPPMLIK_ 0 0 0 REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|306|3|anti-sense REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|306|3|anti-sense MSMS UPN47_class_I_Rep_1 2 456.74273681640625 2 456.782982 911.55141 NaN NaN NaN NaN NaN NaN NaN 38.726 1 42.391 41.891 42.891 3.6652 0 0 0 0.40604 1 7495 7495 2.5775 0 1 + 44627 23902 28214 28226 51363 51363 0.09209678070260452 TLPPPSHGAF 10 Unmodified _TLPPPSHGAF_ 0 0 0 ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS UPN48_class_I_Rep_2 6 512.266845703125 2 512.266542 1022.51853 0.27188 0.00013928 -0.1979 -0.00010138 0.073981 3.7898E-05 512.2663658873942 49.661 0.45 53.355 53.092 53.542 3.6946 42 27 2 0 0 0 0.51565 1 9992 9992 10.074 10.074 1 129200 44628 4513 28215 28227 51364 51364 0.00817187271752573 TLPPPSHGAF 10 Unmodified _TLPPPSHGAF_ 0 0 0 ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 512.266542 1022.51853 0.23484 0.0001203 -0.51197 -0.00026227 -0.27713 -0.00014197 512.2664089367374 49.761 0.43816 53.285 53.047 53.485 3.5246 -0.026402 -0.00030822 NaN 10.074 35 27 2 NaN NaN NaN NaN 0 NaN NaN 0 120930 44629 4513 28215 28227 0.00817187271752573 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 491.7962951660156 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.818 1 50.818 50.318 51.318 0 0 0 0 0.40157 1 10759 10759 7.2892 2.0586 1 + 44630 31890 28216 28228 51365 51365 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 491.7958984375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.091 1 60.091 59.591 60.591 0 0 0 0 0.40157 1 13316 13316 7.2892 1.5288 1 + 44631 31890 28216 28228 51366 51366 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 491.79559326171875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.346 1 60.346 59.846 60.846 0 0 0 0 0.40157 1 13382 13382 7.2892 2.5332 1 + 44632 31890 28216 28228 51367 51367 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7963562011719 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.217 1 52.74 52.24 53.24 3.5239 0 0 0 0.40157 1 9922 9922 7.2892 2.5332 1 + 44633 31890 28216 28228 51368 51368 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7959899902344 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.484 1 53.008 52.508 53.508 3.5246 0 0 0 0.40157 1 10005 10005 7.2892 2.5332 1 + 44634 31890 28216 28228 51369 51369 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7958984375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.765 1 53.29 52.79 53.79 3.5246 0 0 0 0.40157 1 10092 10092 7.2892 2.5332 1 + 44635 31890 28216 28228 51370 51370 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7962646484375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.044 1 53.569 53.069 54.069 3.5246 0 0 0 0.40157 1 10179 10179 7.2892 2.5332 1 + 44636 31890 28216 28228 51371 51371 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7955627441406 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 50.185 1 53.709 53.209 54.209 3.5246 0 0 0 0.40157 1 10222 10222 7.2892 2.0586 1 + 44637 31890 28216 28228 51372 51372 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7963562011719 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.022 1 63.502 63.002 64.002 3.4801 0 0 0 0.40157 1 13240 13240 7.2892 2.5332 1 + 44638 31890 28216 28228 51373 51373 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.7961120605469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 62.649 1 66.111 65.611 66.611 3.4625 0 0 0 0.40501 1 14039 14039 3.9444 1.6417 1 + 44639 31890 28216 28228 51374 51374 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.7959899902344 2 491.795269 981.575986 0.34668 0.00017049 1.3042 0.00064139 1.6509 0.00081189 491.79581957284006 59.568 0.52794 63.054 62.743 63.271 3.4868 56 37 2 0 0 0 0.82752 1 13102 13102 7.2892 2.5332 1 189380 + 44640 31890 28216 28228 51375 51375 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 491.79571533203125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.178 1 63.665 63.165 64.165 3.4868 0 0 0 0.40157 1 13266 13266 7.2892 2.5332 1 + 44641 31890 28216 28228 51376 51376 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 491.7955627441406 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 62.986 1 66.46 65.96 66.96 3.4738 0 0 0 0.40501 1 14124 14124 3.9444 1.3669 1 + 44642 31890 28216 28228 51377 51377 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 491.79534912109375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 65.107 1 68.586 68.086 69.086 3.4792 0 0 0 0.40501 1 14774 14774 3.9444 1.3669 1 + 44643 31890 28216 28228 51378 51378 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.79595947265625 2 491.795269 981.575986 0.2759 0.00013568 1.2517 0.00061559 1.5276 0.00075127 491.795705617612 65.033 0.65186 68.541 68.115 68.767 3.5077 67 48 2 0 0 0 0.82752 1 14672 14672 3.9444 1.3669 1 117190 + 44644 31890 28216 28228 51379 51379 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 491.79595947265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.112 1 52.741 52.241 53.241 3.6291 0 0 0 0.40157 1 9824 9824 7.2892 2.5332 1 + 44645 31890 28216 28228 51380 51380 0.08446074267999393 TLPRLFHV 8 Unmodified _TLPRLFHV_ 0 0 0 REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense REV__MSTB_dup7584|chr17:49328408-49328826:+|1.3981386021534092|0.0110030868946764|6.99|151.0|6|2|sense MSMS UPN48_class_I_Rep_3 7 491.796142578125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.54 1 53.169 52.669 53.669 3.6291 0 0 0 0.40157 1 9956 9956 7.2892 2.5332 1 + 44646 31890 28216 28228 51381 51381 0.08446074267999393 TLPSHLQHR 9 Unmodified _TLPSHLQHR_ 0 0 0 REV__Tigger1_dup6644|chr8:143641765-143642813:-|1.5142793248421034|0.2395202225289005|2.66|151.0|61|3|anti-sense REV__Tigger1_dup6644|chr8:143641765-143642813:-|1.5142793248421034|0.2395202225289005|2.66|151.0|61|3|anti-sense MSMS UPN47_class_I_Rep_1 2 544.8014526367188 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 27.87 1 31.636 31.136 32.136 3.7662 0 0 0 0.39518 1 4212 4212 1.8442 0 1 + 44647 32509 28217 28229 51382 51382 0.048384856602069704 TLPSHNKQK 9 Unmodified _TLPSHNKQK_ 0 0 0 L1MB5_dup8774|chr19:14757198-14757799:+|1.75086535944448|0.0221308556620481|6.31|151.0|13|2|sense L1MB5_dup8774|chr19:14757198-14757799:+|1.75086535944448|0.0221308556620481|6.31|151.0|13|2|sense L1MB5_dup8774|chr19:14757198-14757799:+|1.75086535944448|0.0221308556620481|6.31|151.0|13|2|sense MSMS UPN48_class_I_Rep_2 6 526.79638671875 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 21.901 1 25.546 25.046 26.046 3.6459 0 0 0 0.39518 1 2147 2147 1.8442 0 1 44648 10658 28218 28230 51383 51383 0.05371663566097595 TLPSLPWLH 9 Unmodified _TLPSLPWLH_ 0 0 0 REV__HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|104|1|anti-sense REV__HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|104|1|anti-sense MSMS UPN48_class_I_Rep_1 5 532.302734375 2 532.300384 1062.58622 NaN NaN NaN NaN NaN NaN NaN 47.573 1 51.095 50.595 51.595 3.5219 0 0 0 0.28335 1 9416 9416 11.64 3.7301 1 + 44649 23782 28219 28231 51384 51384 0.05742637202547485 TLPTSDHVTF 10 Unmodified _TLPTSDHVTF_ 0 0 0 L1MEd_dup21089|chr22:30910051-30911316:+|1.0872794696292167|0.2257689027491142|2.27|150.0|59|1|anti-sense L1MEd_dup21089|chr22:30910051-30911316:+|1.0872794696292167|0.2257689027491142|2.27|150.0|59|1|anti-sense L1MEd_dup21089|chr22:30910051-30911316:+|1.0872794696292167|0.2257689027491142|2.27|150.0|59|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.2788696289062 2 559.279846 1116.54514 0.43098 0.00024104 -0.13286 -7.4307E-05 0.29811 0.00016673 559.2796737131066 42.129 0.66159 45.887 45.529 46.191 3.7579 99 65 2 0 0 0 0.55983 1 7717 7717 3.9444 3.9444 1 122430 44650 13199 28220 28232 51385 51385 -0.008471686275925094 TLPVPLLK 8 Unmodified _TLPVPLLK_ 0 0 0 THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29742431640625 2 440.796946 879.57934 -0.41212 -0.00018166 3.5648 0.0015713 3.1526 0.0013897 440.79959863844033 28.147 0.63185 31.913 31.679 32.31 3.7662 79 49 2 0 0 0 0.82752 1 4320 4320 0.79363 0 1 114620 44651 32926 28221 28233 51386 51386 0.1347332432200119 TLPVPLLK 8 Unmodified _TLPVPLLK_ 0 0 0 THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7994079589844 2 440.796946 879.57934 -0.59016 -0.00026014 3.2077 0.001414 2.6176 0.0011538 440.79960928474264 44.637 1.5168 47.882 47.076 48.593 3.2441 138 93 2 0 0 0 0.82752 1 9234 9234 0.79363 0 1 103350 44652 32926 28221 28233 51387 51387 0.1347332432200119 TLPVPLLK 8 Unmodified _TLPVPLLK_ 0 0 0 THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense THE1B-int_dup3351|chr12:62513980-62514345:-|1.0419420404337387|0.0514771649668766|4.34|151.0|14|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.11936 5.2615E-05 3.1073 0.0013697 3.2267 0.0014223 440.79942687506804 47.664 0.14973 47.664 47.56 47.709 0 -0.10902 -7.0425E-05 NaN 0.79363 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 84287 44653 32926 28221 28233 0.1347332432200119 TLPYASLTF 9 Unmodified _TLPYASLTF_ 0 0 0 MER21C_dup235|chr1:150112549-150113336:-|1.6154683980762128|0.0663103858770017|4.61|151.0|7|1|sense MER21C_dup235|chr1:150112549-150113336:-|1.6154683980762128|0.0663103858770017|4.61|151.0|7|1|sense MER21C_dup235|chr1:150112549-150113336:-|1.6154683980762128|0.0663103858770017|4.61|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 506.7705078125 2 506.771126 1011.5277 NaN NaN NaN NaN NaN NaN NaN 85.574 1 89.28 88.78 89.78 3.7058 0 0 0 0.2408 1 20352 20352 13.906 0 1 44654 15887 28222 28234 51388 51388 0.022395358374069474 TLQDIVYKL 9 Unmodified _TLQDIVYKL_ 0 0 0 ENST00000456675.2_1_10:22615378-22616584:+|nuORF;ENSG00000168283|ENST00000376663|BMI1;ENSG00000277258|ENST00000620225|PCGF2 ENST00000456675.2_1_10:22615378-22616584:+|nuORF ENST00000456675.2_1_10:22615378-22616584:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 546.8006591796875 2 546.818607 1091.62266 0.40584 0.00022192 -0.30007 -0.00016408 0.10577 5.7837E-05 546.8182846877843 64.804 0.33383 68.16 68.018 68.352 3.3557 39 26 2 0 0 0 0.11355 1 15398 15398 31.268 10.815 1 78519 44655 4362 28223 28235 51389 51389 0.08051469308588821 TLQEFNITL 9 Unmodified _TLQEFNITL_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MULTI-MSMS UPN47_class_I_Rep_1 2 540.3089599609375 2 539.792589 1077.57063 0.36452 0.00019676 0.21288 0.00011491 0.5774 0.00031168 539.7927630768604 66.237 0.54194 69.594 69.313 69.855 3.3576 67 35 2 0 0 0 0.38714 1 15923 15923 8.7454 0 1 134130 44656 5034 28224 28236 51390 51390 0.03494305894855643 TLQEFNITL 9 Unmodified _TLQEFNITL_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MULTI-MSMS UPN47_class_I_Rep_1 2 539.7924194335938 2 539.792589 1077.57063 0.42021 0.00022682 -0.67407 -0.00036386 -0.25387 -0.00013703 539.7921448039181 77.793 0.52357 81.222 80.95 81.474 3.4289 74 49 2 0 0 0 0.21414 1 19351 19351 19.362 1.2156 1 115750 44657 5034 28224 28236 51391 51391 0.03494305894855643 TLQEFNITL 9 Unmodified _TLQEFNITL_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MULTI-MSMS UPN47_class_I_Rep_2 3 539.7930908203125 2 539.792589 1077.57063 0.435 0.00023481 -0.83266 -0.00044946 -0.39766 -0.00021466 539.7920695503373 77.896 0.46944 81.239 81.029 81.498 3.3428 66 49 2 0 0 0 0.12795 2 19319 19319;19364 28.495 1.1211 1 131400 44658 5034 28224 28236 51392;51393 51392 0.03494305894855643 TLQEFNITL 9 Unmodified _TLQEFNITL_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MSMS UPN47_class_I_Rep_3 4 539.7935791015625 2 539.792589 1077.57063 NaN NaN NaN NaN NaN NaN NaN 78.176 1 81.457 80.957 81.957 3.2816 0 0 0 0.19736 1 19486 19486 16.566 0.41677 1 44659 5034 28224 28236 51394 51394 0.03494305894855643 TLQELLII 8 Unmodified _TLQELLII_ 0 0 0 REV__ENSG00000112379|ENST00000251691|ARFGEF3 REV__ENSG00000112379|ENST00000251691|ARFGEF3 MSMS UPN47_class_I_Rep_3 4 471.7955627441406 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 65.625 1 68.805 68.305 69.305 3.1795 0 0 0 0.4032 1 15773 15773 6.3541 0 1 + 44660 18483 28225 28237 51395 51395 0.10660699251207006 TLQINLVF 8 Unmodified _TLQINLVF_ 0 0 0 REV__ENST00000559434.1_1_15:52529600-52534394:-|nuORF REV__ENST00000559434.1_1_15:52529600-52534394:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 474.2823791503906 2 474.28166 946.548768 0.08082 3.8331E-05 1.3988 0.00066341 1.4796 0.00070174 474.28225838116253 34.122 0.16161 34.122 33.99 34.151 0 11 10 2 0 0 0 0.82752 1 6042 6042 7.9102 0 1 1193900 + 44661 18912 28226 28238 51396 51396 0.07335545936962262 TLQINLVF 8 Unmodified _TLQINLVF_ 0 0 0 REV__ENST00000559434.1_1_15:52529600-52534394:-|nuORF REV__ENST00000559434.1_1_15:52529600-52534394:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 474.28216552734375 2 474.28166 946.548768 0.094031 4.4597E-05 1.3921 0.00066025 1.4861 0.00070485 474.2822825949915 34.696 0.055386 34.696 34.684 34.74 0 6 4 2 0 0 0 0.82752 1 6229 6229 4.3292 0 1 481560 + 44662 18912 28226 28238 51397 51397 0.07335545936962262 TLQKQSVVY 9 Unmodified _TLQKQSVVY_ 0 0 0 ENST00000466404.5_1_19:54631532-54634860:+|nuORF;ENSG00000105618|ENST00000321030|PRPF31 ENST00000466404.5_1_19:54631532-54634860:+|nuORF ENST00000466404.5_1_19:54631532-54634860:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 533.3003540039062 2 533.300581 1064.58661 0.20489 0.00010927 -0.10998 -5.8654E-05 0.094907 5.0614E-05 533.3004362035068 35.791 0.61321 35.791 35.466 36.079 0 62 41 2 0 0 0 0.17897 2 6542 6542;6608 22.736 6.8891 1 128990 44663 1747 28227 28239 51398;51399 51398 0.056900121317767116 TLQKQWKF 8 Unmodified _TLQKQWKF_ 0 0 0 Charlie1a_dup490|chr1:243227010-243227814:-|1.081326769992676|0.0385836484818107|4.81|151.0|1|1|sense Charlie1a_dup490|chr1:243227010-243227814:-|1.081326769992676|0.0385836484818107|4.81|151.0|1|1|sense Charlie1a_dup490|chr1:243227010-243227814:-|1.081326769992676|0.0385836484818107|4.81|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 539.8059692382812 2 539.805834 1077.59712 NaN NaN NaN NaN NaN NaN NaN 42.203 1 45.711 45.211 46.211 3.5079 0 0 0 0.40643 1 7778 7778 2.0598 0 1 44664 484 28228 28240 51400 51400 0.06142039576843672 TLQLCKHCH 9 Unmodified _TLQLCKHCH_ 0 0 0 ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32 ENST00000524000.5_1_8:124515615-124518835:-|nuORF ENST00000524000.5_1_8:124515615-124518835:-|nuORF MSMS UPN46_class_I_Rep_3 1 541.7640991210938 2 541.765329 1081.5161 NaN NaN NaN NaN NaN NaN NaN 13.848 1 13.848 13.348 14.348 0 0 0 0 0.39428 1 484 484 2.0598 0 1 44665 3741 28229 28241 51401 51401 -0.021393077292032103 TLQMEVKILKL 11 Unmodified _TLQMEVKILKL_ 0 0 0 REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|25|1|sense REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 439.2703857421875 3 439.272108 1314.79449 -0.86702 -0.00038086 -0.71041 -0.00031206 -1.5774 -0.00069292 439.2718050585922 38.102 0.28629 41.343 41.149 41.436 3.2414 36 22 2 0 0 0 0.67113 1 7339 7339 1.3296 0 1 58130 + 44666 28916 28230 28242 51402 51402 0.14968878004629005 TLQQGSLEFF 10 Unmodified _TLQQGSLEFF_ 0 0 0 nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12 nc|ENSG00000142405|P59046-4|NLRP12 nc|ENSG00000142405|P59046-4|NLRP12 MULTI-MSMS UPN47_class_I_Rep_2 3 585.2969360351562 2 585.295496 1168.57644 0.51786 0.0003031 0.037386 2.1882E-05 0.55525 0.00032498 585.2955692952096 55.585 0.5381 58.895 58.623 59.161 3.3102 51 29 2 0 0 0 0.51508 1 12671 12671 10.151 0.6066 1 118880 44667 3249 28231 28243 51403 51403 -0.001105955934690428 TLQRRMLKVT 10 Unmodified _TLQRRMLKVT_ 0 0 0 ENST00000416645.6_1_5:36608538-36612883:+|nuORF;ENST00000504121.5_1_5:36608538-36608790:+|nuORF ENST00000416645.6_1_5:36608538-36612883:+|nuORF ENST00000416645.6_1_5:36608538-36612883:+|nuORF MSMS UPN48_class_I_Rep_1 5 623.3772583007812 2 623.376632 1244.73871 NaN NaN NaN NaN NaN NaN NaN 107.35 1 110.98 110.48 111.48 3.6299 0 0 0 0.53105 1 25877 25877 12.241 0.74595 1 44668 6652 28232 28244 51404 51404 0.12613089607657457 TLQSKQSFAK 10 Unmodified _TLQSKQSFAK_ 0 0 0 REV__ENSG00000198040|ENST00000539354|ZNF84 REV__ENSG00000198040|ENST00000539354|ZNF84 MULTI-MSMS UPN47_class_I_Rep_2 3 569.780029296875 2 569.316763 1136.61897 0.51725 0.00029448 -0.29973 -0.00017064 0.21752 0.00012384 569.3165947980932 54.616 0.28605 57.934 57.68 57.966 3.3187 12 12 2 0 0 0 0.56189 1 12366 12366 2.4985 0 1 39893 + 44669 21108 28233 28245 51405 51405 0.056127995347424076 TLRARQLL 8 Unmodified _TLRARQLL_ 0 0 0 nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA nc|ENSG00000179583|P33076-2|CIITA nc|ENSG00000179583|P33076-2|CIITA MSMS UPN47_class_I_Rep_2 3 485.8119812011719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.534 1 71.804 71.304 72.304 3.2696 0 0 0 0.40643 1 16592 16592 2.0598 0 1 44670 4865 28234 28246 51406 51406 0.12232861670997863 TLRDIETFY 9 Unmodified _TLRDIETFY_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS UPN46_class_I_Rep_3 1 579.2962036132812 2 579.295496 1156.57644 0.43663 0.00025294 -0.37113 -0.00021499 0.0655 3.7944E-05 579.2951813017323 62.403 0.27285 62.403 62.217 62.49 0 34 27 2 0 0 0 0.15547 1 13939 13939 24.991 6.8446 1 400370 44671 3911 28235 28247 51407 51407 0.004414044065242706 TLRFILRMRKL 11 Unmodified _TLRFILRMRKL_ 0 0 0 ENST00000435791.1_3_6:169652085-169652226:-|nuORF ENST00000435791.1_3_6:169652085-169652226:-|nuORF ENST00000435791.1_3_6:169652085-169652226:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 482.9742126464844 3 482.974508 1445.90169 0.13804 6.6668E-05 0.33827 0.00016338 0.47631 0.00023004 483.30894779033594 51.314 0.1881 54.838 54.728 54.916 3.5246 22 12 2 0 0 0 0.68132 1 10582 10582 0.40827 0.31342 1 98393 44672 6748 28236 28248 51408 51408 0.1965789272951497 TLRFILRMRKL 11 Unmodified _TLRFILRMRKL_ 0 0 0 ENST00000435791.1_3_6:169652085-169652226:-|nuORF ENST00000435791.1_3_6:169652085-169652226:-|nuORF ENST00000435791.1_3_6:169652085-169652226:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 482.9747619628906 3 482.974508 1445.90169 0.22306 0.00010773 0.81627 0.00039424 1.0393 0.00050197 482.97459690146 50.503 1.442 54.198 53.65 55.092 3.6946 203 91 3 0 0 0 0.68132 1 10515 10515 0.40827 0.31342 1 258060 44673 6748 28236 28248 51409 51409 0.1965789272951497 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MSMS UPN46_class_I_Rep_3 1 505.9755554199219 3 505.974558 1514.90185 NaN NaN NaN NaN NaN NaN NaN 107.45 1 107.45 106.95 107.95 0 0 0 0 0.38417 1 26205 26205 1.3296 0 1 + 44674 19894 28237 28249 51410 51410 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 505.97454833984375 3 505.974558 1514.90185 0.31242 0.00015808 -0.22091 -0.00011177 0.09151 4.6302E-05 505.9743345103396 107.15 0.49804 110.68 110.39 110.89 3.5382 254 69 5 0 0 0 0.67113 3 26160 26135;26160;26195 1.3296 0.35968 1 3407900 + 44675 19894 28237 28249 51411;51412;51413 51412 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 505.9745788574219 3 505.974558 1514.90185 0.21123 0.00010688 0.15068 7.624E-05 0.36191 0.00018312 505.9747477451689 106.96 0.80494 110.59 110.1 110.9 3.6299 459 104 6 0 0 0 0.67113 5 25699 25699;25726;25755;25786;25816 1.3296 1.2463 1 9368100 + 44676 19894 28237 28249 51414;51415;51416;51417;51418 51414 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MSMS UPN48_class_I_Rep_1 5 505.9745788574219 3 505.974558 1514.90185 NaN NaN NaN NaN NaN NaN NaN 107.29 1 110.92 110.42 111.42 3.6299 0 0 0 0.38417 1 25854 25854 0.45452 0 1 + 44677 19894 28237 28249 51419 51419 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 505.9744873046875 3 505.974558 1514.90185 0.30717 0.00015542 -0.10832 -5.4808E-05 0.19885 0.00010061 505.97452528389005 106.8 0.87418 110.48 110.06 110.94 3.6796 501 125 5 0 0 0 0.67113 7 25183 25159;25183;25210;25235;25262;25287;25314 1.3296 1.2463 1 5754300 + 44678 19894 28237 28249 51420;51421;51422;51423;51424;51425;51426 51421 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 505.9745178222656 3 505.974558 1514.90185 0.2705 0.00013687 -0.043634 -2.2078E-05 0.22687 0.00011479 505.9745604772102 106.75 0.86492 110.44 110.1 110.96 3.6899 468 121 5 0 0 0 0.67113 5 25134 25134;25159;25187;25212;25239 1.3296 0.92138 1 7507600 + 44679 19894 28237 28249 51427;51428;51429;51430;51431 51427 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MSMS UPN48_class_I_Rep_3 7 505.97442626953125 3 505.974558 1514.90185 NaN NaN NaN NaN NaN NaN NaN 107.22 1 110.91 110.41 111.41 3.6899 0 0 0 0.38417 1 25270 25270 1.3296 0.87513 1 + 44680 19894 28237 28249 51432 51432 0.16499028773728242 TLRFRVQRRQR 11 Unmodified _TLRFRVQRRQR_ 0 0 0 REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 505.974558 1514.90185 0.30717 0.00015542 -0.10832 -5.4808E-05 0.19885 0.00010061 505.97452528389005 106.8 0.87418 110.48 110.06 110.94 3.6796 -0.13155 1.106E-05 NaN 1.3296 501 125 5 NaN NaN NaN NaN 0 NaN NaN 0 5754300 + 44681 19894 28237 28249 0.16499028773728242 TLRGGATVKVS 11 Unmodified _TLRGGATVKVS_ 0 0 0 nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1;ENSG00000113580.15,NR3C1,chr5,-,I18.1,143282726,143295459|55|14.1|5|intron;ENSG00000113580.15,NR3C1,chr5,-,I18.1,143282726,143295459|55|14.1|1|intron;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1 nc|ENSG00000113580|P04150-7|NR3C1 nc|ENSG00000113580|P04150-7|NR3C1 MULTI-MSMS UPN48_class_I_Rep_1 5 544.8251342773438 2 544.824755 1087.63496 0.42879 0.00023362 0.1137 6.1947E-05 0.54249 0.00029556 544.8247581411731 89.216 0.20377 92.842 92.72 92.924 3.6255 36 21 2 0 0 0 0.67519 1 21405 21405 0.96228 0.36078 1 90226 44682 2051 28238 28250 51433 51433 0.09464505771643417 TLRGREEL 8 Unmodified _TLRGREEL_ 0 0 0 REV__ENST00000458594.5_1_22:30197094-30223519:-|nuORF REV__ENST00000458594.5_1_22:30197094-30223519:-|nuORF MSMS UPN47_class_I_Rep_3 4 487.27490234375 2 487.274898 972.535243 NaN NaN NaN NaN NaN NaN NaN 61.699 1 64.866 64.366 65.366 3.1667 0 0 0 0.40604 1 14574 14574 2.5775 0 1 + 44683 22418 28239 28251 51434 51434 0.04787688157693992 TLRIARLRPII 11 Unmodified _TLRIARLRPII_ 0 0 0 REV__ENST00000593502.5_1_19:40715047-40719145:+|nuORF REV__ENST00000593502.5_1_19:40715047-40719145:+|nuORF MSMS UPN47_class_I_Rep_2 3 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.331 1 31.83 31.33 32.33 3.4986 0 0 0 0.38417 1 4381 4381 0.094841 0 1 + 44684 18951 28240 28252 51435 51435 0.2241727705586527 TLRIIETI 8 Unmodified _TLRIIETI_ 0 0 0 REV__MER49_dup71|chr1:120999527-121000000:+|1.7728933346956472|0.4306474726019763|2.04|150.0|9|2|sense REV__MER49_dup71|chr1:120999527-121000000:+|1.7728933346956472|0.4306474726019763|2.04|150.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 479.78692626953125 2 479.800217 957.585882 NaN NaN NaN NaN NaN NaN NaN 45.872 1 49.226 48.726 49.726 3.3534 0 0 0 0.40643 1 9707 9707 2.0598 0 1 + 44685 31344 28241 28253 51436 51436 0.1053921748269886 TLRKALLH 8 Unmodified _TLRKALLH_ 0 0 0 REV__ENST00000547237.1_1_14:25900789-25901323:-|nuORF REV__ENST00000547237.1_1_14:25900789-25901323:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.3264465332031 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 32.813 1 32.813 32.313 33.313 0 0 0 0 0.40738 1 5662 5662 0.79363 0 1 + 44686 22942 28242 28254 51437 51437 0.12525763159328562 TLRKRFYI 8 Unmodified _TLRKRFYI_ 0 0 0 REV__LTR101_Mam_dup686|chr10:75533061-75533796:+|3.6563983439983856|0.0101192225251205|8.5|147.0|12|2|sense REV__LTR101_Mam_dup686|chr10:75533061-75533796:+|3.6563983439983856|0.0101192225251205|8.5|147.0|12|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 548.2750854492188 2 548.834926 1095.6553 0.18374 0.00010084 0.20577 0.00011293 0.38951 0.00021378 548.8349731507557 32.239 0.036423 32.239 32.229 32.265 0 6 2 3 0 0 0 0.72333 1 5491 5491 0.69038 0 1 374630 + 44687 30775 28243 28255 51438 51438 0.11129721222141598 TLRLCLRL 8 Unmodified _TLRLCLRL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.T3506Yfs*46|1|0.45|ENSG00000086758|chrX:53547794-53547795|-/G|frameshift_variant nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS UPN47_class_I_Rep_1 2 494.3083190917969 2 494.310229 986.605906 NaN NaN NaN NaN NaN NaN NaN 62.941 1 66.3 65.8 66.8 3.3595 0 0 0 0.39996 1 14863 14863 7.9102 0 1 44688 1286;17971 28244 28256 51439 51439 0.11206689941661807 TLRPCKLR 8 Unmodified _TLRPCKLR_ 0 0 0 REV__L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|130|3|sense REV__L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|130|3|sense MSMS UPN47_class_I_Rep_1 2 493.79058837890625 2 493.800029 985.585505 NaN NaN NaN NaN NaN NaN NaN 62.847 1 66.207 65.707 66.707 3.3595 0 0 0 0.40604 1 14835 14835 2.5775 0 1 + 44689 29529 28245 28257 51440 51440 0.09213519281865956 TLRPGHFA 8 Unmodified _TLRPGHFA_ 0 0 0 L1MD2_dup89|chr1:39050697-39051357:+|1.7544027614499969|0.191721459823424|3.19|151.0|33|1|anti-sense L1MD2_dup89|chr1:39050697-39051357:+|1.7544027614499969|0.191721459823424|3.19|151.0|33|1|anti-sense L1MD2_dup89|chr1:39050697-39051357:+|1.7544027614499969|0.191721459823424|3.19|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 449.7486877441406 2 449.748319 897.482085 NaN NaN NaN NaN NaN NaN NaN 68.444 1 71.952 71.452 72.452 3.5083 0 0 0 0.40604 1 15785 15785 2.5775 0.27475 1 44690 12042 28246 28258 51441 51441 0.029243551657032185 TLRPSLLSV 9 Unmodified _TLRPSLLSV_ 0 0 0 REV__AluSq2_dup59394|chr21:34820369-34820656:+|2.605019691383317|0.0550453917439899|5.56|151.0|17|3|anti-sense REV__AluSq2_dup59394|chr21:34820369-34820656:+|2.605019691383317|0.0550453917439899|5.56|151.0|17|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.3097839355469 2 493.305667 984.596781 0.23936 0.00011808 1.0266 0.00050643 1.266 0.00062451 493.30570057352224 63.87 0.24988 67.126 67.026 67.276 3.2556 53 21 3 0 0 0 0.48643 1 15178 15178 2.0598 0 1 58282 + 44691 17125 28247 28259 51442 51442 0.10386619857013102 TLRPVIHF 8 Unmodified _TLRPVIHF_ 0 0 0 L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.7957458496094 2 491.795269 981.575986 0.29021 0.00014273 1.3043 0.00064146 1.5945 0.00078419 491.7957014616444 63.374 0.13073 66.832 66.789 66.92 3.4578 17 9 2 0 0 0 0.82752 1 14272 14272 4.756 0.81161 1 78672 44692 10481 28248 28260 51443 51443 0.08446074267988024 TLRPVIHF 8 Unmodified _TLRPVIHF_ 0 0 0 L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7952575683594 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 44.786 1 48.299 47.799 48.799 3.5132 0 0 0 0.4044 1 8565 8565 4.756 0 1 44693 10481 28248 28260 51444 51444 0.08446074267988024 TLRPVIHF 8 Unmodified _TLRPVIHF_ 0 0 0 L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense L1MB4_dup1739|chr3:125237715-125238345:+|1.0979109594689225|0.0569499050822024|4.27|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_3 7 491.79595947265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.406 1 53.035 52.535 53.535 3.6291 0 0 0 0.39819 1 9915 9915 8.5933 0 1 44694 10481 28248 28260 51445 51445 0.08446074267988024 TLRQLSRPLAP 11 Unmodified _TLRQLSRPLAP_ 0 0 0 REV__MSTC_dup1485|chr7:131075706-131076129:-|1.1284771201263897|0.0421710787205149|4.74|151.0|14|3|sense REV__MSTC_dup1485|chr7:131075706-131076129:-|1.1284771201263897|0.0421710787205149|4.74|151.0|14|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 626.3798217773438 2 626.380229 1250.7459 0.60023 0.00037598 -0.9176 -0.00057477 -0.31737 -0.00019879 626.3797540129832 98.409 0.81717 102.31 102.18 103 3.9022 179 116 3 0 0 0 0.54468 1 23323 23323 8.1555 2.4237 1 2643600 + 44695 31914 28249 28261 51446 51446 0.13056145479754377 TLRQLSRPLAP 11 Unmodified _TLRQLSRPLAP_ 0 0 0 REV__MSTC_dup1485|chr7:131075706-131076129:-|1.1284771201263897|0.0421710787205149|4.74|151.0|14|3|sense REV__MSTC_dup1485|chr7:131075706-131076129:-|1.1284771201263897|0.0421710787205149|4.74|151.0|14|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 626.380229 1250.7459 0.68709 0.00043038 -1.133 -0.0007097 -0.44593 -0.00027932 626.3793778739315 102.45 0.14101 102.45 102.36 102.5 0 0.036991 0.00011821 NaN 8.1555 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1295100 + 44696 31914 28249 28261 0.13056145479754377 TLRQLSRPLAP 11 Unmodified _TLRQLSRPLAP_ 0 0 0 REV__MSTC_dup1485|chr7:131075706-131076129:-|1.1284771201263897|0.0421710787205149|4.74|151.0|14|3|sense REV__MSTC_dup1485|chr7:131075706-131076129:-|1.1284771201263897|0.0421710787205149|4.74|151.0|14|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 626.380229 1250.7459 0.55641 0.00034852 -1.3652 -0.00085513 -0.80877 -0.0005066 626.3792811922176 98.627 1.0745 102.42 101.77 102.84 3.7926 0.0057961 -0.00017264 NaN 8.1555 288 150 3 NaN NaN NaN NaN 0 NaN NaN 0 673400 + 44697 31914 28249 28261 0.13056145479754377 TLRQVRVV 8 Unmodified _TLRQVRVV_ 0 0 0 ENST00000414411.3_1_11:61081315-61081372:-|nuORF ENST00000414411.3_1_11:61081315-61081372:-|nuORF ENST00000414411.3_1_11:61081315-61081372:-|nuORF MSMS UPN47_class_I_Rep_2 3 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.391 1 71.66 71.16 72.16 3.2696 0 0 0 0.40746 1 16549 16549 0.69038 0 1 44698 6639 28250 28262 51447 51447 0.12232861670997863 TLRRANDL 8 Unmodified _TLRRANDL_ 0 0 0 REV__ENSG00000135821|ENST00000331872|GLUL REV__ENSG00000135821|ENST00000331872|GLUL MSMS UPN47_class_I_Rep_1 2 479.7961730957031 2 479.775065 957.535577 NaN NaN NaN NaN NaN NaN NaN 66.256 1 69.614 69.114 70.114 3.3576 0 0 0 0.40604 1 15860 15860 2.5775 0 1 + 44699 19155 28251 28263 51448 51448 0.055111078775553324 TLRRIGLN 8 Unmodified _TLRRIGLN_ 0 0 0 ENST00000605941.5_1_2:190528642-190530834:+|nuORF ENST00000605941.5_1_2:190528642-190530834:+|nuORF ENST00000605941.5_1_2:190528642-190530834:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7957763671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 66.969 1 70.16 69.66 70.66 3.1914 0 0 0 0.4044 1 16186 16186 4.756 0 1 44700 7680 28252 28264 51449 51449 0.1039228863688777 TLRRNKVV 8 Unmodified _TLRRNKVV_ 0 0 0 REV__CON__Q0VCM5 REV__CON__Q0VCM5 MSMS UPN47_class_I_Rep_3 4 493.30596923828125 2 493.3169 984.619247 NaN NaN NaN NaN NaN NaN NaN 69.561 1 72.765 72.265 73.265 3.2044 0 0 0 0.40625 1 16967 16967 2.3027 0 1 + + 44701 17486 28253 28265 51450 51450 0.12632264045271313 TLRTLPTL 8 Unmodified _TLRTLPTL_ 0 0 0 ENST00000525522.5_1_11:499827-504867:-|nuORF;ENSG00000023191|ENST00000354420|RNH1 ENST00000525522.5_1_11:499827-504867:-|nuORF ENST00000525522.5_1_11:499827-504867:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 457.2346496582031 2 457.78711 913.559667 -0.34824 -0.00015942 -0.97338 -0.0004456 -1.3216 -0.00060502 457.78647892298847 35.579 0.93516 39.256 38.919 39.854 3.6762 102 62 3 0 0 0 0.72333 1 6676 6676 5.2307 0 1 130230 44702 813 28254 28266 51451 51451 0.09942948311231703 TLRTVVSSW 9 Unmodified _TLRTVVSSW_ 0 0 0 L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|87|3|anti-sense L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|87|3|anti-sense L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|87|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 524.7930908203125 2 524.792924 1047.57129 0.2475 0.00012988 -0.20042 -0.00010518 0.047077 2.4706E-05 524.7928341801277 57.904 0.43234 57.904 57.713 58.145 0 61 46 2 0 0 0 0.37599 1 12703 12703 9.3831 0 1 203890 44703 13236 28255 28267 51452 51452 0.049411453345555856 TLRTVVSSW 9 Unmodified _TLRTVVSSW_ 0 0 0 L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|87|3|anti-sense L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|87|3|anti-sense L1MEf_dup11067|chr18:79905930-79907334:-|2.1884595642137685|0.4846736592007991|2.17|151.0|87|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 524.792924 1047.57129 0.2475 0.00012988 -0.20042 -0.00010518 0.047077 2.4706E-05 524.7928341801277 57.904 0.43234 57.904 57.713 58.145 0 0 0 NaN 9.3831 61 46 2 NaN NaN NaN NaN 0 NaN NaN 0 203890 44704 13236 28255 28267 0.049411453345555856 TLRVYFCV 8 Unmodified _TLRVYFCV_ 0 0 0 L1M5_dup4564|chr2:24734816-24735277:+|2.6319085533784|0.061373490883783|5.42|151.0|34|3|anti-sense L1M5_dup4564|chr2:24734816-24735277:+|2.6319085533784|0.061373490883783|5.42|151.0|34|3|anti-sense L1M5_dup4564|chr2:24734816-24735277:+|2.6319085533784|0.061373490883783|5.42|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7691650390625 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 32.229 1 35.516 35.016 36.016 3.2867 0 0 0 0.40604 1 5596 5596 2.5775 0.078994 1 44705 9175 28256 28268 51453 51453 0.021393194050574493 TLRYMGLF 8 Unmodified _TLRYMGLF_ 0 0 0 REV__nc|ENSG00000276293|P78356-2|PIP4K2B REV__nc|ENSG00000276293|P78356-2|PIP4K2B MSMS UPN47_class_I_Rep_3 4 500.7678527832031 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 31.929 1 35.228 34.728 35.728 3.2991 0 0 0 0.40604 1 5504 5504 2.5775 0 1 + 44706 21437 28257 28269 51454 51454 0.021393194050574493 TLSAEQFHLVD 11 Unmodified _TLSAEQFHLVD_ 0 0 0 ENSG00000138380|ENST00000438828|CARF ENSG00000138380|ENST00000438828|CARF ENSG00000138380|ENST00000438828|CARF MSMS UPN47_class_I_Rep_2 3 630.317626953125 2 630.31696 1258.61937 NaN NaN NaN NaN NaN NaN NaN 62.582 1 65.837 65.337 66.337 3.2558 0 0 0 0.38417 1 14788 14788 2.4985 0 1 44707 3085 28258 28270 51455 51455 0.00040174463947550976 TLSDIMVSL 9 Oxidation (M) _TLSDIM(Oxidation (M))VSL_ TLSDIM(1)VSL TLSDIM(44)VSL 0 0 1 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10;ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|1|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MSMS UPN47_class_I_Rep_3 4 497.76007080078125 2 497.759901 993.505248 0.22311 0.00011106 -0.27694 -0.00013785 -0.053823 -2.6791E-05 497.75959414114203 68.509 0.56567 71.706 71.402 71.967 3.1977 77 40 2 0 0 0 0.061943 1 16601 16601 43.858 18.459 1 115950 44708 2995 28259 28271 51456 51456 96 0.008235683775069447 TLSDIMVSL 9 Oxidation (M) _TLSDIM(Oxidation (M))VSL_ 0 0 1 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10;ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|1|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 497.759901 993.505248 0.19025 9.4699E-05 -0.28192 -0.00014033 -0.091666 -4.5628E-05 497.75963078650676 68.534 0.38695 71.803 71.69 72.077 3.2696 0.097082 -0.00014806 NaN 43.858 56 35 2 NaN NaN NaN NaN 0 NaN NaN 0 158790 44709 2995 28259 28271 96 0.008235683775069447 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron;ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|2|intron;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 480.7841491699219 2 480.784233 959.553913 0.25891 0.00012448 -0.21461 -0.00010318 0.044296 2.1297E-05 480.7840092846813 82.379 0.32173 82.379 82.117 82.439 0 29 25 3 0 0 0 0.23293 1 19518 19518 18.146 0 1 466360 44710 3023 28260 28272 51457 51457 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron;ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|2|intron;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 480.7843322753906 2 480.784233 959.553913 0.1476 7.0964E-05 0.0071324 3.4291E-06 0.15473 7.4393E-05 480.78407342335385 77.623 0.78699 81.052 80.782 81.569 3.4289 169 76 3 0 0 0 0.0055465 5 19276 19204;19240;19276;19313;19350 78.149 23.376 1 444620 44711 3023 28260 28272 51458;51459;51460;51461;51462 51460 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron;ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|2|intron;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 480.78399658203125 2 480.784233 959.553913 0.2186 0.0001051 -0.014757 -7.0952E-06 0.20384 9.8004E-05 480.7840655211996 77.772 0.92804 81.115 80.784 81.712 3.3428 160 98 3 0 0 0 0.0081951 3 19273 19273;19308;19345 71.134 25.113 1 393730 44712 3023 28260 28272 51463;51464;51465 51463 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron;ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|2|intron;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron MULTI-MSMS UPN47_class_I_Rep_3 4 480.7840881347656 2 480.784233 959.553913 0.1135 5.4568E-05 0.043186 2.0763E-05 0.15668 7.5331E-05 480.78410346288774 77.84 0.67152 81.122 80.789 81.46 3.2816 142 73 3 0 0 0 0.012845 3 19387 19355;19387;19416 68.081 15.337 1 383820 44713 3023 28260 28272 51466;51467;51468 51467 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron;ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|2|intron;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8 ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron ENSG00000137413.16,TAF8,chr6,+,I8.1,42066460,42068464|34|5.15|3|intron MSMS UPN47_class_I_Rep_3 4 480.7841491699219 2 480.784233 959.553913 NaN NaN NaN NaN NaN NaN NaN 78.079 1 81.361 80.861 81.861 3.2816 0 0 0 0.023553 1 19459 19459 52.268 6.2474 1 44714 3023 28260 28272 51469 51469 0.07251805008900192 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.3084716796875 2 540.308406 1078.60226 0.32286 0.00017444 -0.13542 -7.3171E-05 0.18743 0.00010127 540.3082758625334 72.21 0.2069 72.21 72.087 72.294 0 36 21 2 0 0 0 0.14216 1 16652 16652 26.268 3.5319 1 200110 44715 5810 28261 28273 51470 51470 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MSMS UPN46_class_I_Rep_3 1 540.3087768554688 2 540.308406 1078.60226 NaN NaN NaN NaN NaN NaN NaN 71.953 1 71.953 71.453 72.453 0 0 0 0 0.050874 1 16604 16604 36.506 2.1045 1 44716 5810 28261 28273 51471 51471 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.3087158203125 2 540.308406 1078.60226 0.36495 0.00019719 0.050008 2.702E-05 0.41496 0.00022421 540.3084151353327 66.375 0.88064 69.733 69.382 70.262 3.3576 112 60 2 0 0 0 0.26468 1 15989 15989 16.149 3.1066 1 296040 44717 5810 28261 28273 51472 51472 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 540.3086547851562 2 540.308406 1078.60226 0.33053 0.00017859 0.067133 3.6273E-05 0.39766 0.00021486 540.3083334687285 66.624 0.40199 69.883 69.579 69.981 3.2588 62 28 3 0 0 0 0.044454 1 16003 16003 47.594 7.6447 1 351280 44718 5810 28261 28273 51473 51473 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 540.3087158203125 2 540.308406 1078.60226 0.41888 0.00022632 0.27154 0.00014671 0.69041 0.00037304 540.3085541274237 66.797 0.80184 69.983 69.549 70.351 3.1853 137 62 3 0 0 0 0.053261 3 16148 16109;16148;16185 47.594 7.6447 1 233050 44719 5810 28261 28273 51474;51475;51476 51475 0.06610298648797652 TLSEDTTDS 9 Unmodified _TLSEDTTDS_ 0 0 0 nc|ENSG00000102445|Q9H714-2|RUBCNL;nc|ENSG00000102445|Q9H714-1|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL nc|ENSG00000102445|Q9H714-2|RUBCNL nc|ENSG00000102445|Q9H714-2|RUBCNL MSMS UPN46_class_I_Rep_3 1 484.3843994140625 2 484.706377 967.3982 NaN NaN NaN NaN NaN NaN NaN 113.81 1 113.81 113.31 114.31 0 0 0 0 0.4029 1 28113 28113 0 0 1 44720 1614 28262 28274 51477 51477 -0.08680310303191163 TLSFCKRK 8 Unmodified _TLSFCKRK_ 0 0 0 Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|143|2|anti-sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|143|2|anti-sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|143|2|anti-sense MSMS UPN47_class_I_Rep_3 4 491.780029296875 2 491.778762 981.542971 NaN NaN NaN NaN NaN NaN NaN 26.614 1 29.962 29.462 30.462 3.3478 0 0 0 0.40746 1 3920 3920 0.69038 0 1 44721 538 28263 28275 51478 51478 0.05146124153634446 TLSFLSALVL 10 Unmodified _TLSFLSALVL_ 0 0 0 REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF REV__ENST00000310771.8_1_7:99950889-99951396:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 532.3236694335938 2 532.323525 1062.6325 0.2201 0.00011716 -0.064401 -3.4282E-05 0.1557 8.2881E-05 532.3233535567937 66.174 0.86362 69.433 69.229 70.092 3.2588 79 56 2 0 0 0 0.52083 1 15932 15932 9.3831 0 1 155180 + 44722 21705 28264 28276 51479 51479 0.10368657313983931 TLSGKYHF 8 Unmodified _TLSGKYHF_ 0 0 0 HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|5|1|sense;HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|1|1|sense HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|5|1|sense HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.7477722167969 2 476.747985 951.481417 0.10675 5.0893E-05 -0.09658 -4.6044E-05 0.01017 4.8487E-06 476.7479164372163 70.673 0.46641 73.956 73.739 74.206 3.2828 57 45 2 0 0 0 0.82752 1 17231 17231 5.2307 0 1 88437 44723 8143 28265 28277 51480 51480 0.0037351572599391147 TLSGKYHF 8 Unmodified _TLSGKYHF_ 0 0 0 HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|5|1|sense;HERVH-int_dup3453|chr9:100143009-100146113:-|4.180203661981356|0.1064653981708644|5.3|151.0|1|1|sense HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|5|1|sense HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 476.7476806640625 2 476.747985 951.481417 0.051679 2.4638E-05 -0.048654 -2.3196E-05 0.0030253 1.4423E-06 476.7479490980646 70.724 0.52472 73.936 73.742 74.267 3.2113 65 43 2 0 0 0 0.82752 1 17326 17326 13.508 0 1 71980 44724 8143 28265 28277 51481 51481 0.0037351572599391147 TLSHFLQL 8 Unmodified _TLSHFLQL_ 0 0 0 REV__Tigger4_dup718|chr7:133702626-133704134:-|1.1350647858963312|0.0266189714380233|5.41|151.0|15|1|sense REV__Tigger4_dup718|chr7:133702626-133704134:-|1.1350647858963312|0.0266189714380233|5.41|151.0|15|1|sense MSMS UPN47_class_I_Rep_1 2 479.7643127441406 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 65.507 1 68.862 68.362 69.362 3.3557 0 0 0 0.3903 1 15630 15630 11.64 0 1 + 44725 32785 28266 28278 51482 51482 0.047903752771503605 TLSIGKRTLS 10 Unmodified _TLSIGKRTLS_ 0 0 0 REV__L1PA4_dup7287|chrX:75313522-75319657:-|3.1399488197313667|0.3453227966389521|3.18|151.0|311|2|anti-sense REV__L1PA4_dup7287|chrX:75313522-75319657:-|3.1399488197313667|0.3453227966389521|3.18|151.0|311|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 538.3265380859375 2 538.327131 1074.63971 0.3564 0.00019186 0.18644 0.00010037 0.54284 0.00029222 538.3270800506282 95.502 0.24323 95.502 95.351 95.594 0 54 22 3 0 0 0 0.54822 1 23161 23161 5.7319 0 1 10749000 + 44726 29673 28267 28279 51483 51483 0.10537389914429696 TLSILRGG 8 Unmodified _TLSILRGG_ 0 0 0 L1MB2_dup7700|chr18:13025517-13027712:-|1.6761676302629709|0.0933016745783515|4.17|150.0|28|2|sense L1MB2_dup7700|chr18:13025517-13027712:-|1.6761676302629709|0.0933016745783515|4.17|150.0|28|2|sense L1MB2_dup7700|chr18:13025517-13027712:-|1.6761676302629709|0.0933016745783515|4.17|150.0|28|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 408.750732421875 2 408.750527 815.486502 0.066084 2.7012E-05 1.172 0.00047907 1.2381 0.00050608 408.75091710548 107.89 0.36189 107.89 107.81 108.17 0 55 28 4 0 0 0 0.82752 1 26348 26348 2.3027 0 1 100020000 44727 10289 28268 28280 51484 51484 0.07137819588626826 TLSIPPERL 9 Unmodified _TLSIPPERL_ 0 0 0 ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000268043|ENST00000698835|NBPF12 ENSG00000263956|ENST00000682118|NBPF11 ENSG00000263956|ENST00000682118|NBPF11 MSMS UPN48_class_I_Rep_1 5 513.3043823242188 2 513.303124 1024.5917 NaN NaN NaN NaN NaN NaN NaN 58.101 1 61.588 61.088 62.088 3.487 0 0 0 0.38784 1 12647 12647 3.5965 0 1 44728 5793 28269 28281 51485 51485 0.0803831599437217 TLSLIWQKE 9 Unmodified _TLSLIWQKE_ 0 0 0 ENST00000583136.5_3_18:51796348-51797777:+|nuORF ENST00000583136.5_3_18:51796348-51797777:+|nuORF ENST00000583136.5_3_18:51796348-51797777:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 560.2974243164062 2 559.316232 1116.61791 0.40992 0.00022927 -0.38392 -0.00021473 0.026 1.4542E-05 559.3160443129831 58.709 0.73544 62.126 61.792 62.527 3.4171 80 47 2 0 0 0 0.48643 1 13691 13691 2.0598 0 1 260530 44729 7566 28270 28282 51486 51486 0.06426585165854704 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.3165893554688 2 545.316763 1088.61897 0.37516 0.00020458 0.37671 0.00020543 0.75187 0.00041001 545.3167592716622 83.273 0.17453 83.273 83.175 83.349 0 38 15 3 0 0 0 0.56155 1 19757 19757 2.7352 0 1 217430 + 44730 30141 28271 28283 51487 51487 0.07820799534761136 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 545.3170776367188 2 545.316763 1088.61897 0.38032 0.00020739 0.30433 0.00016596 0.68465 0.00037335 545.3168309418872 84.951 0.34976 84.951 84.779 85.129 0 100 32 4 0 0 0 0.55148 1 20224 20224 5.2969 0 1 8541700 + 44731 30141 28271 28283 51488 51488 0.07820799534761136 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 545.317138671875 2 545.316763 1088.61897 0.46152 0.00025168 0.13464 7.3423E-05 0.59617 0.0003251 545.316617338891 81.753 2.687 85.076 84.249 86.936 3.3231 527 313 3 0 0 0 0.56155 1 20736 20736 2.7352 0 1 410740 + 44732 30141 28271 28283 51489 51489 0.07820799534761136 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.38032 0.00020739 0.30433 0.00016596 0.68465 0.00037335 545.3168309418872 84.951 0.34976 84.951 84.779 85.129 0 -0.026637 0.00012927 NaN 5.2969 100 32 4 NaN NaN NaN NaN 0 NaN NaN 0 8541700 + 44733 30141 28271 28283 0.07820799534761136 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 545.316763 1088.61897 0.45111 0.000246 0.29554 0.00016116 0.74664 0.00040716 545.3166242583432 81.398 1.4361 84.961 84.281 85.717 3.5624 -0.016467 0.00011967 NaN 5.2969 340 176 3 NaN NaN NaN NaN 0 NaN NaN 0 403790 + 44734 30141 28271 28283 0.07820799534761136 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 545.316763 1088.61897 0.48166 0.00026266 0.22092 0.00012047 0.70259 0.00038313 545.3166090196361 81.35 0.86391 85.007 84.494 85.358 3.6567 0.029242 3.83E-05 NaN 5.2969 167 109 3 NaN NaN NaN NaN 0 NaN NaN 0 542990 + 44735 30141 28271 28283 0.07820799534761136 TLSLKQGTKN 10 Unmodified _TLSLKQGTKN_ 0 0 0 REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense REV__L1PA7_dup5936|chr7:36255456-36259307:-|3.126268533881308|0.1181430889897802|4.73|151.0|48|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 545.316763 1088.61897 0.51228 0.00027935 0.13255 7.228E-05 0.64482 0.00035163 545.3165804532301 81.208 2.1792 84.893 84.297 86.476 3.685 -0.084606 -5.8088E-05 NaN 5.2969 459 276 3 NaN NaN NaN NaN 0 NaN NaN 0 576570 + 44736 30141 28271 28283 0.07820799534761136 TLSLKRDKE 9 Unmodified _TLSLKRDKE_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 545.3173828125 2 545.316763 1088.61897 0.48461 0.00026427 0.22708 0.00012383 0.71169 0.0003881 545.3168407061366 83.382 0.17371 86.921 86.882 87.056 3.5386 25 18 2 0 0 0 0.50088 1 20853 20853 0.52476 0 1 69768 44737 11515 28272 28284 51490 51490 0.07820799534761136 TLSLKRDKE 9 Unmodified _TLSLKRDKE_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.38154 0.00020806 0.029638 1.6162E-05 0.41117 0.00022422 545.3165772260052 86.713 0.4331 86.713 86.609 87.042 0 -0.04232 9.7154E-05 NaN 0.52476 55 41 2 NaN NaN NaN NaN 0 NaN NaN 0 469770 44738 11515 28272 28284 0.07820799534761136 TLSLKRDKE 9 Unmodified _TLSLKRDKE_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 545.316763 1088.61897 0.50128 0.00027336 -0.40009 -0.00021818 0.10119 5.5182E-05 545.3165285194336 83.22 0.087425 86.631 86.604 86.692 3.4116 -0.12347 -0.00037152 NaN 0.52476 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 215270 44739 11515 28272 28284 0.07820799534761136 TLSLQKIKKL 10 Unmodified _TLSLQKIKKL_ 0 0 0 AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense;AluJo_dup53425|chr13:28004295-28004607:-|1.5395508035514358|0.01594386923641|6.59|151.0|2|1|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 586.3925170898438 2 586.392273 1170.76999 0.50174 0.00029422 0.38754 0.00022725 0.88928 0.00052146 586.3923588759809 108.27 0.72962 111.9 111.4 112.13 3.6355 153 61 3 0 0 0 0.54466 1 26476 26476 6.2058 0 1 5877200 44740 50 28273 28285 51491 51491 0.19143985913410688 TLSLQKIKKL 10 Unmodified _TLSLQKIKKL_ 0 0 0 AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense;AluJo_dup53425|chr13:28004295-28004607:-|1.5395508035514358|0.01594386923641|6.59|151.0|2|1|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.392578125 2 586.392273 1170.76999 0.40771 0.00023908 0.56346 0.00033041 0.97117 0.00056949 586.392318239344 108.14 0.50781 111.78 111.42 111.93 3.6313 93 42 3 0 0 0 0.54466 1 26095 26095 6.2058 0 1 4253900 44741 50 28273 28285 51492 51492 0.19143985913410688 TLSLQKIKKL 10 Unmodified _TLSLQKIKKL_ 0 0 0 AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense;AluJo_dup53425|chr13:28004295-28004607:-|1.5395508035514358|0.01594386923641|6.59|151.0|2|1|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 586.392273 1170.76999 0.50723 0.00029744 1.0562 0.00061932 1.5634 0.00091676 586.3930262213452 108.1 0.49532 111.64 111.37 111.86 3.5382 -0.052016 7.3906E-05 NaN 6.2058 89 53 3 NaN NaN NaN NaN 0 NaN NaN 0 6411600 44742 50 28273 28285 0.19143985913410688 TLSLQKIKKL 10 Unmodified _TLSLQKIKKL_ 0 0 0 AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense;AluJo_dup53425|chr13:28004295-28004607:-|1.5395508035514358|0.01594386923641|6.59|151.0|2|1|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 586.392273 1170.76999 0.48182 0.00028253 1.3561 0.00079521 1.8379 0.0010777 586.3934210586594 108.03 0.11688 111.7 111.59 111.71 3.6746 0.0074909 0.00042567 NaN 6.2058 40 10 5 NaN NaN NaN NaN 0 NaN NaN 0 8650600 44743 50 28273 28285 0.19143985913410688 TLSLQKIKKL 10 Unmodified _TLSLQKIKKL_ 0 0 0 AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense;AluJo_dup53425|chr13:28004295-28004607:-|1.5395508035514358|0.01594386923641|6.59|151.0|2|1|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense AluJb_dup50279|chr7:92711553-92711861:-|1.0022529948077|0.0107892091196013|6.54|151.0|5|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 586.392273 1170.76999 0.50295 0.00029493 1.024 0.00060046 1.5269 0.00089538 586.3931545592752 108.06 0.080879 111.74 111.67 111.75 3.6813 0.044059 3.6169E-05 NaN 6.2058 21 7 4 NaN NaN NaN NaN 0 NaN NaN 0 6082400 44744 50 28273 28285 0.19143985913410688 TLSLQKITW 9 Unmodified _TLSLQKITW_ 0 0 0 AluJb_dup84427|chr12:68629040-68629278:-|2.4633897072144646|0.0435939662486808|5.82|151.0|6|2|sense AluJb_dup84427|chr12:68629040-68629278:-|2.4633897072144646|0.0435939662486808|5.82|151.0|6|2|sense AluJb_dup84427|chr12:68629040-68629278:-|2.4633897072144646|0.0435939662486808|5.82|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 545.3172607421875 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 79.991 1 83.456 82.956 83.956 3.465 0 0 0 0.38784 1 19939 19939 3.5965 0 1 44745 74 28274 28286 51493 51493 0.08222889028456848 TLSLQKIYK 9 Unmodified _TLSLQKIYK_ 0 0 0 AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|1|1|sense AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|1|1|sense AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 547.3329467773438 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 107.62 1 107.62 107.12 108.12 0 0 0 0 0.29868 1 26253 26253 10.824 0 1 44746 200 28275 28287 51494 51494 0.11167462062553568 TLSLQKIYK 9 Unmodified _TLSLQKIYK_ 0 0 0 AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|1|1|sense AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|1|1|sense AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 547.3452758789062 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 92.905 1 96.311 95.811 96.811 3.4052 0 0 0 0.39598 1 23180 23180 1.6526 0 1 44747 200 28275 28287 51495 51495 0.11167462062553568 TLSLQKNKN 9 Unmodified _TLSLQKNKN_ 0 0 0 AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense;AluJr_dup83791|chr22:20572640-20572942:+|1.465896332280468|0.4508535438389236|1.7|151.0|5|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3038940429688 2 523.303655 1044.59276 0.31427 0.00016446 0.055181 2.8877E-05 0.36945 0.00019333 523.3034544618384 80.448 0.21747 80.448 80.269 80.487 0 35 20 3 0 0 0 0.48846 1 18915 18915 1.8442 0 1 189620 44748 186 28276 28288 51496 51496 0.07224530363282611 TLSLQKNKN 9 Unmodified _TLSLQKNKN_ 0 0 0 AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense;AluJr_dup83791|chr22:20572640-20572942:+|1.465896332280468|0.4508535438389236|1.7|151.0|5|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3035278320312 2 523.303655 1044.59276 0.32007 0.00016749 -0.08935 -4.6757E-05 0.23072 0.00012074 523.3035242836236 82.628 0.88257 82.628 81.847 82.73 0 188 83 3 0 0 0 0.46869 4 19441 19441;19516;19548;19582 3.9444 3.9444 1 2318900 44749 186 28276 28288 51497;51498;51499;51500 51497 0.07224530363282611 TLSLQKNKN 9 Unmodified _TLSLQKNKN_ 0 0 0 AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense;AluJr_dup83791|chr22:20572640-20572942:+|1.465896332280468|0.4508535438389236|1.7|151.0|5|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3035278320312 2 523.303655 1044.59276 0.32268 0.00016886 -0.29024 -0.00015188 0.032433 1.6972E-05 523.3033945331226 83.224 0.19521 83.224 83.154 83.349 0 32 17 2 0 0 0 0.46869 1 19760 19760 3.9444 3.9444 1 979280 44750 186 28276 28288 51501 51501 0.07224530363282611 TLSLQKNKN 9 Unmodified _TLSLQKNKN_ 0 0 0 AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense;AluJr_dup83791|chr22:20572640-20572942:+|1.465896332280468|0.4508535438389236|1.7|151.0|5|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.3035278320312 2 523.303655 1044.59276 0.33814 0.00017695 -0.32169 -0.00016834 0.016455 8.6108E-06 523.3033180396045 79.787 1.211 83.252 82.198 83.409 3.465 234 120 3 0 0 0 0.46869 1 19771 19771 3.9444 0.3479 1 592380 44751 186 28276 28288 51502 51502 0.07224530363282611 TLSLQKNKN 9 Unmodified _TLSLQKNKN_ 0 0 0 AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense;AluJr_dup83791|chr22:20572640-20572942:+|1.465896332280468|0.4508535438389236|1.7|151.0|5|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.3031616210938 2 523.303655 1044.59276 0.34109 0.00017849 -0.69999 -0.00036631 -0.3589 -0.00018781 523.3030302459525 80.089 0.18966 83.554 83.409 83.599 3.465 35 27 2 0 0 0 0.46869 1 19934 19934 3.9444 0.66309 1 420530 44752 186 28276 28288 51503 51503 0.07224530363282611 TLSLQKNKN 9 Unmodified _TLSLQKNKN_ 0 0 0 AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense;AluJr_dup83791|chr22:20572640-20572942:+|1.465896332280468|0.4508535438389236|1.7|151.0|5|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense AluSx1_dup75399|chr12:57425518-57425806:+|1.3254316450165498|0.0183170717796923|6.18|150.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.3035278320312 2 523.303655 1044.59276 0.091064 4.7654E-05 -0.344 -0.00018002 -0.25293 -0.00013236 523.3032427091608 80.293 0.15945 83.662 83.599 83.758 3.3694 36 21 2 0 0 0 0.46869 1 19993 19993 3.9444 0 1 287440 44753 186 28276 28288 51504 51504 0.07224530363282611 TLSLQKTQKS 10 Unmodified _TLSLQKTQKS_ 0 0 0 AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense;AluJr_dup2191|chr1:45657573-45657857:+|1.0217323662359272|0.4596684910140317|1.15|151.0|3|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.3300170898438 2 567.32987 1132.64519 0.43159 0.00024486 -0.041458 -2.352E-05 0.39014 0.00022134 567.3297141449531 83.599 1.9226 87.137 86.276 88.199 3.5386 385 228 3 0 0 0 0.56155 1 21046 21046 2.7352 2.7352 1 511650 44754 137 28277 28289 51505 51505 0.08417068706239661 TLSLQKTQKS 10 Unmodified _TLSLQKTQKS_ 0 0 0 AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense;AluJr_dup2191|chr1:45657573-45657857:+|1.0217323662359272|0.4596684910140317|1.15|151.0|3|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3297729492188 2 567.32987 1132.64519 0.43012 0.00024402 -0.11734 -6.657E-05 0.31278 0.00017745 567.3296099587885 83.835 0.29581 87.433 87.333 87.629 3.5973 91 35 3 0 0 0 0.56155 1 20049 20049 2.7352 2.7352 1 318850 44755 137 28277 28289 51506 51506 0.08417068706239661 TLSLQKTQKS 10 Unmodified _TLSLQKTQKS_ 0 0 0 AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense;AluJr_dup2191|chr1:45657573-45657857:+|1.0217323662359272|0.4596684910140317|1.15|151.0|3|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3299560546875 2 567.32987 1132.64519 0.42976 0.00024381 0.087393 4.9581E-05 0.51715 0.00029339 567.3297601670881 84.129 0.41358 87.727 87.636 88.049 3.5973 80 52 3 0 0 0 0.55724 1 20212 20212 4.5289 1.5336 1 298790 44756 137 28277 28289 51507 51507 0.08417068706239661 TLSLQKTQKS 10 Unmodified _TLSLQKTQKS_ 0 0 0 AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense;AluJr_dup2191|chr1:45657573-45657857:+|1.0217323662359272|0.4596684910140317|1.15|151.0|3|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense AluSz6_dup40459|chr17:30746075-30746366:+|1.3341491210492176|0.0152118200069308|6.45|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.3297729492188 2 567.32987 1132.64519 0.47573 0.0002699 0.10783 6.1173E-05 0.58356 0.00033107 567.3297691187736 84.108 0.61578 87.836 87.709 88.325 3.7281 166 79 3 0 0 0 0.56155 1 20037 20037 2.7352 2.7352 1 373650 44757 137 28277 28289 51508 51508 0.08417068706239661 TLSLRGATLT 10 Unmodified _TLSLRGATLT_ 0 0 0 REV__ENST00000555071.5_1_14:75349324-75357795:+|nuORF REV__ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_3 7 516.6441040039062 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 97.501 1 101.4 100.9 101.9 3.9022 0 0 0 0.53105 1 23109 23109 3.2813 1.2216 1 + 44758 22986 28278 28290 51509 51509 0.08297414506046152 TLSLRHLW 8 Unmodified _TLSLRHLW_ 0 0 0 ENST00000436336.6_1_7:99054790-99054886:+|nuORF ENST00000436336.6_1_7:99054790-99054886:+|nuORF ENST00000436336.6_1_7:99054790-99054886:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.2958984375 2 513.298176 1024.5818 NaN NaN NaN NaN NaN NaN NaN 53.09 1 56.417 55.917 56.917 3.3266 0 0 0 0.39819 1 11893 11893 8.5933 0 1 44759 6753 28279 28291 51510 51510 0.07049172779647961 TLSLSLVRFA 10 Unmodified _TLSLSLVRFA_ 0 0 0 REV__L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|246|2|anti-sense REV__L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|246|2|anti-sense MSMS UPN48_class_I_Rep_3 7 553.830078125 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 81.666 1 85.351 84.851 85.851 3.685 0 0 0 0.53105 1 19339 19339 1.4819 0 1 + 44760 24063 28280 28292 51511 51511 0.10094577919812764 TLSMRKRW 8 Unmodified _TLSMRKRW_ 0 0 0 REV__nc|ENSG00000078725|O60477-3|BRINP1 REV__nc|ENSG00000078725|O60477-3|BRINP1 MSMS UPN46_class_I_Rep_3 1 539.304443359375 2 539.302936 1076.59132 NaN NaN NaN NaN NaN NaN NaN 99.921 1 99.921 99.421 100.42 0 0 0 0 0.40746 1 24354 24354 0.69038 0 1 + 44761 17889 28281 28293 51512 51512 0.05608617793541271 TLSNIWRH 8 Unmodified _TLSNIWRH_ 0 0 0 MER20_dup8314|chrX:1531143-1531314:+|2.655475337766587|0.0047751575851363|9.12|151.0|3|2|sense MER20_dup8314|chrX:1531143-1531314:+|2.655475337766587|0.0047751575851363|9.12|151.0|3|2|sense MER20_dup8314|chrX:1531143-1531314:+|2.655475337766587|0.0047751575851363|9.12|151.0|3|2|sense MSMS UPN47_class_I_Rep_3 4 513.7891845703125 2 513.777608 1025.54066 NaN NaN NaN NaN NaN NaN NaN 35.482 1 38.736 38.236 39.236 3.2547 0 0 0 0.40625 1 6577 6577 2.3027 0 1 44762 15841 28282 28294 51513 51513 0.02891411740165495 TLSPLPPLKKW 11 Unmodified _TLSPLPPLKKW_ 0 0 0 REV__ENSG00000149357|ENST00000278671|LAMTOR1 REV__ENSG00000149357|ENST00000278671|LAMTOR1 MSMS UPN47_class_I_Rep_1 2 640.3926391601562 2 640.392273 1278.76999 NaN NaN NaN NaN NaN NaN NaN 50.704 1 54.332 53.832 54.832 3.6285 0 0 0 0.38417 1 11141 11141 2.4985 0.65425 1 + 44763 19614 28283 28295 51514 51514 0.14175985913402656 TLSPLPPLKKW 11 Unmodified _TLSPLPPLKKW_ 0 0 0 REV__ENSG00000149357|ENST00000278671|LAMTOR1 REV__ENSG00000149357|ENST00000278671|LAMTOR1 MSMS UPN48_class_I_Rep_3 7 640.393310546875 2 640.392273 1278.76999 NaN NaN NaN NaN NaN NaN NaN 51.711 1 55.322 54.822 55.822 3.6105 0 0 0 0.38417 1 10622 10622 2.4985 0.41248 1 + 44764 19614 28283 28295 51515 51515 0.14175985913402656 TLSPPPKL 8 Unmodified _TLSPPPKL_ 0 0 0 ENSG00000267467|ENST00000592954|APOC4 ENSG00000267467|ENST00000592954|APOC4 ENSG00000267467|ENST00000592954|APOC4 MSMS UPN46_class_I_Rep_3 1 426.76434326171875 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 65.469 1 65.469 64.969 65.969 0 0 0 0 0.40738 1 14798 14798 0.79363 0 1 44765 5803 28284 28296 51516 51516 0.07995874391190227 TLSPRHRA 8 Unmodified _TLSPRHRA_ 0 0 0 ENST00000509933.1_1_6:3231852-3232104:+|nuORF ENST00000509933.1_1_6:3231852-3232104:+|nuORF ENST00000509933.1_1_6:3231852-3232104:+|nuORF MSMS UPN48_class_I_Rep_1 5 469.2696533203125 2 469.26995 936.525347 NaN NaN NaN NaN NaN NaN NaN 32.574 1 36.1 35.6 36.6 3.5266 0 0 0 0.4044 1 4969 4969 4.756 0 1 44766 7176 28285 28297 51517 51517 0.0545454494298383 TLSPVTAIH 9 Unmodified _TLSPVTAIH_ 0 0 0 REV__nc|ENSG00000115239|Q9Y575-2|ASB3 REV__nc|ENSG00000115239|Q9Y575-2|ASB3 MSMS UPN48_class_I_Rep_1 5 470.01947021484375 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 29.625 1 33.174 32.674 33.674 3.5499 0 0 0 0.39428 1 4144 4144 2.0598 1.2661 1 + 44767 18549 28286 28298 51518 51518 0.05202071414510101 TLSQKNIYI 9 Unmodified _TLSQKNIYI_ 0 0 0 AluJb_dup106763|chr17:30714786-30715092:+|1.0518548671691377|0.0117652840167278|6.48|151.0|2|1|sense AluJb_dup106763|chr17:30714786-30715092:+|1.0518548671691377|0.0117652840167278|6.48|151.0|2|1|sense AluJb_dup106763|chr17:30714786-30715092:+|1.0518548671691377|0.0117652840167278|6.48|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.8096313476562 2 540.308406 1078.60226 0.32314 0.00017459 -0.15055 -8.1346E-05 0.17258 9.3248E-05 540.3082919202268 72.327 0.20639 72.327 72.283 72.489 0 32 21 2 0 0 0 0.19147 1 16734 16734 21.537 0 1 180570 44768 10 28287 28299 51519 51519 0.06610298648797652 TLSQLRMYRKK 11 Unmodified _TLSQLRMYRKK_ 0 0 0 Tigger7_dup930|chr4:173330688-173330875:+|1.3853529404314069|0.4086454614037371|1.76|151.0|6|3|sense Tigger7_dup930|chr4:173330688-173330875:+|1.3853529404314069|0.4086454614037371|1.76|151.0|6|3|sense Tigger7_dup930|chr4:173330688-173330875:+|1.3853529404314069|0.4086454614037371|1.76|151.0|6|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 475.27874755859375 3 475.278256 1422.81294 0.24936 0.00011851 -0.04748 -2.2566E-05 0.20188 9.5948E-05 475.2781425820988 59.993 2.0117 63.473 62.07 64.082 3.4801 219 139 2 0 0 0 0.68219 1 13386 13386 0.32927 0.16995 1 417360 44769 33458 28288 28300 51520 51520 0.11844432699172103 TLSQLRMYRKK 11 Unmodified _TLSQLRMYRKK_ 0 0 0 Tigger7_dup930|chr4:173330688-173330875:+|1.3853529404314069|0.4086454614037371|1.76|151.0|6|3|sense Tigger7_dup930|chr4:173330688-173330875:+|1.3853529404314069|0.4086454614037371|1.76|151.0|6|3|sense Tigger7_dup930|chr4:173330688-173330875:+|1.3853529404314069|0.4086454614037371|1.76|151.0|6|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 475.27813720703125 3 475.278256 1422.81294 0.29879 0.00014201 -0.15201 -7.2247E-05 0.14678 6.976E-05 475.2781156233415 59.524 1.9757 63.01 62.024 64 3.4868 251 143 2 0 0 0 0.68219 1 13349 13349 0.32927 0.16995 1 584480 44770 33458 28288 28300 51521 51521 0.11844432699172103 TLSRKSRK 8 Unmodified _TLSRKSRK_ 0 0 0 MLT1G1_dup2525|chr11:128749349-128749646:-|1.1585898522407676|0.0221221511560642|5.71|150.0|14|1|anti-sense MLT1G1_dup2525|chr11:128749349-128749646:-|1.1585898522407676|0.0221221511560642|5.71|150.0|14|1|anti-sense MLT1G1_dup2525|chr11:128749349-128749646:-|1.1585898522407676|0.0221221511560642|5.71|150.0|14|1|anti-sense MSMS UPN47_class_I_Rep_1 2 488.3070068359375 2 488.306532 974.598512 NaN NaN NaN NaN NaN NaN NaN 66.136 1 69.493 68.993 69.993 3.3576 0 0 0 0.40738 1 15823 15823 0.79363 0 1 44771 16410 28289 28301 51522 51522 0.11019673665612117 TLSRLRRRRRK 11 Unmodified _TLSRLRRRRRK_ 0 0 0 Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|93|2|anti-sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|93|2|anti-sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|93|2|anti-sense MSMS UPN48_class_I_Rep_3 7 500.24444580078125 3 499.993953 1496.96003 NaN NaN NaN NaN NaN NaN NaN 27.871 1 31.627 31.127 32.127 3.7555 0 0 0 0.38417 1 3716 3716 0 0 1 44772 33280 28290 28302 51523 51523 0.2314271041898337 TLSRPRKL 8 Unmodified _TLSRPRKL_ 0 0 0 REV__nc|ENSG00000154556|O94875-10|SORBS2 REV__nc|ENSG00000154556|O94875-10|SORBS2 MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.085 1 76.382 75.882 76.882 3.2971 0 0 0 0.40404 1 17950 17950 5.2307 0 1 + 44773 32019 28291 28303 51524 51524 0.12232861670997863 TLSRPRKL 8 Unmodified _TLSRPRKL_ 0 0 0 REV__nc|ENSG00000154556|O94875-10|SORBS2 REV__nc|ENSG00000154556|O94875-10|SORBS2 MSMS UPN47_class_I_Rep_2 3 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.287 1 76.584 76.084 77.084 3.2971 0 0 0 0.40604 1 18012 18012 2.5775 0 1 + 44774 32019 28291 28303 51525 51525 0.12232861670997863 TLSRPRKL 8 Unmodified _TLSRPRKL_ 0 0 0 REV__nc|ENSG00000154556|O94875-10|SORBS2 REV__nc|ENSG00000154556|O94875-10|SORBS2 MSMS UPN47_class_I_Rep_3 4 485.81170654296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.109 1 76.336 75.836 76.836 3.2271 0 0 0 0.40404 1 18035 18035 5.2307 0 1 + 44775 32019 28291 28303 51526 51526 0.12232861670997863 TLSRPRKL 8 Unmodified _TLSRPRKL_ 0 0 0 REV__nc|ENSG00000154556|O94875-10|SORBS2 REV__nc|ENSG00000154556|O94875-10|SORBS2 MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.474 1 76.711 76.211 77.211 3.2363 0 0 0 0.40604 1 18147 18147 2.5775 0 1 + 44776 32019 28291 28303 51527 51527 0.12232861670997863 TLSSPLTDMY 10 Unmodified _TLSSPLTDMY_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS UPN47_class_I_Rep_1 2 564.2666625976562 2 564.26809 1126.52163 0.30501 0.00017211 -0.20761 -0.00011715 0.097396 5.4957E-05 564.2679005249161 52.904 0.59313 56.462 56.23 56.823 3.5585 43 34 2 0 0 0 0.52083 1 11885 11885 9.3831 0.63772 1 123100 + 44777 19845;32023 28292 28304 51528 51528 -0.03657350456410313 TLSSRGLGGL 10 Unmodified _TLSSRGLGGL_ 0 0 0 MST-int_dup28|chr3:172361075-172361753:-|1.800027419022313|0.0890629087961062|4.34|151.0|7|1|sense MST-int_dup28|chr3:172361075-172361753:-|1.800027419022313|0.0890629087961062|4.34|151.0|7|1|sense MST-int_dup28|chr3:172361075-172361753:-|1.800027419022313|0.0890629087961062|4.34|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.7770080566406 2 480.777274 959.539994 -0.35221 -0.00016933 -0.080412 -3.866E-05 -0.43262 -0.00020799 480.77715460692576 21.116 0.59502 24.759 24.464 25.059 3.6436 91 63 2 0 0 0 0.54466 1 2258 2258 6.2058 0.97511 1 61330 44778 16522 28293 28305 51529 51529 0.0586057230049164 TLSVDFHLY 9 Unmodified _TLSVDFHLY_ 0 0 0 MLT1L_dup7131|chr10:5707270-5707644:-|1.5537129762627462|0.0487488551172963|4.99|151.0|18|1|anti-sense MLT1L_dup7131|chr10:5707270-5707644:-|1.5537129762627462|0.0487488551172963|4.99|151.0|18|1|anti-sense MLT1L_dup7131|chr10:5707270-5707644:-|1.5537129762627462|0.0487488551172963|4.99|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.779296875 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 54.36 1 57.861 57.361 58.361 3.5014 0 0 0 0.38639 1 12256 12256 3.9444 0 1 44779 16488 28294 28306 51530 51530 0.0013803672338781325 TLSVMIIIVM 10 Unmodified _TLSVMIIIVM_ 0 0 0 MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|16|1|sense MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|16|1|sense MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|16|1|sense MSMS UPN47_class_I_Rep_2 3 560.2783813476562 2 560.329439 1118.64432 NaN NaN NaN NaN NaN NaN NaN 43.582 1 46.939 46.439 47.439 3.358 0 0 0 0.53105 1 9004 9004 1.4819 0.79152 1 44780 15940 28295 28307 51531 51531 0.08974814741327464 TLTESMGQLF 10 Unmodified _TLTESMGQLF_ 0 0 0 REV__THE1C-int_dup104|chr1:205155693-205156793:+|1.2133865828732575|0.0694086593368306|4.13|151.0|2|1|sense REV__THE1C-int_dup104|chr1:205155693-205156793:+|1.2133865828732575|0.0694086593368306|4.13|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 563.7752685546875 2 563.776082 1125.53761 NaN NaN NaN NaN NaN NaN NaN 48.449 1 51.683 51.183 52.183 3.2345 0 0 0 0.53105 1 10534 10534 13.042 0.51092 1 + 44781 32283 28296 28308 51532 51532 -0.02013644219505295 TLTHGANAAFN 11 Unmodified _TLTHGANAAFN_ 0 0 0 nc|ENSG00000160185|P57075-2|UBASH3A;ENSG00000160185|ENST00000319294|UBASH3A;ENST00000473381.1_1_21:43855574-43867301:+|nuORF nc|ENSG00000160185|P57075-2|UBASH3A nc|ENSG00000160185|P57075-2|UBASH3A MSMS UPN48_class_I_Rep_3 7 558.7738647460938 2 558.775262 1115.53597 NaN NaN NaN NaN NaN NaN NaN 47.804 1 51.438 50.938 51.938 3.6339 0 0 0 0.38417 1 9419 9419 4.897 0.56777 1 44782 3858 28297 28309 51533 51533 -0.017175171932422018 TLTISAARLY 10 Unmodified _TLTISAARLY_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000128394|ENST00000308521|APOBEC3F MSMS UPN47_class_I_Rep_3 4 554.8236083984375 2 554.821681 1107.62881 NaN NaN NaN NaN NaN NaN NaN 70.255 1 73.466 72.966 73.966 3.2113 0 0 0 0.53105 1 17175 17175 3.2813 0 1 44783 2589;5724 28298 28310 51534 51534 0.07929987540137517 TLTLEGLQL 9 Unmodified _TLTLEGLQL_ 0 0 0 MER67B_dup11|chr1:110907034-110907468:+|2.119078720138779|0.01316033344246|7.33|151.0|4|1|sense MER67B_dup11|chr1:110907034-110907468:+|2.119078720138779|0.01316033344246|7.33|151.0|4|1|sense MER67B_dup11|chr1:110907034-110907468:+|2.119078720138779|0.01316033344246|7.33|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 494.2897033691406 2 494.289682 986.564812 NaN NaN NaN NaN NaN NaN NaN 79.319 1 82.614 82.114 83.114 3.295 0 0 0 0.32573 1 19819 19819 9.3831 0 1 44784 16192 28299 28311 51535 51535 0.07099207383191697 TLTPPGSSAAV 11 Unmodified _TLTPPGSSAAV_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MSMS UPN47_class_I_Rep_2 3 500.76739501953125 2 500.769114 999.523675 NaN NaN NaN NaN NaN NaN NaN 31.939 1 35.408 34.908 35.908 3.4691 0 0 0 0.38417 1 5471 5471 2.7352 0.67545 1 + 44785 17533 28300 28312 51536 51536 0.023894463437159175 TLTPRRVK 8 Unmodified _TLTPRRVK_ 0 0 0 REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8118591308594 2 485.811451 969.608348 0.11753 5.7098E-05 0.94106 0.00045718 1.0586 0.00051428 485.8116804246998 64.814 0.38733 68.169 68.076 68.463 3.3557 38 30 2 0 0 0 0.82752 1 15479 15479 0.69038 0 1 566130 + 44786 25496 28301 28313 51537 51537 0.12232861670997863 TLTPRRVK 8 Unmodified _TLTPRRVK_ 0 0 0 REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.478 1 68.734 68.234 69.234 3.2556 0 0 0 0.40604 1 15669 15669 2.5775 0 1 + 44787 25496 28301 28313 51538 51538 0.12232861670997863 TLTPRRVK 8 Unmodified _TLTPRRVK_ 0 0 0 REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.623 1 68.879 68.379 69.379 3.2556 0 0 0 0.40604 1 15714 15714 2.5775 0 1 + 44788 25496 28301 28313 51539 51539 0.12232861670997863 TLTPRRVK 8 Unmodified _TLTPRRVK_ 0 0 0 REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense REV__L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|21|1|sense MSMS UPN47_class_I_Rep_2 3 485.8115234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.675 1 71.944 71.444 72.444 3.2696 0 0 0 0.40738 1 16635 16635 0.79363 0 1 + 44789 25496 28301 28313 51540 51540 0.12232861670997863 TLTRIELSK 9 Unmodified _TLTRIELSK_ 0 0 0 REV__nc|ENSG00000066032|P26232-3|CTNNA2 REV__nc|ENSG00000066032|P26232-3|CTNNA2 MSMS UPN47_class_I_Rep_1 2 530.8211669921875 2 530.821681 1059.62881 NaN NaN NaN NaN NaN NaN NaN 75.568 1 78.972 78.472 79.472 3.4034 0 0 0 0.38916 1 18660 18660 3.2813 0 1 + 44790 17761 28302 28314 51541 51541 0.10137987540110771 TLTRKRVS 8 Unmodified _TLTRKRVS_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MSMS UPN47_class_I_Rep_2 3 480.80181884765625 2 480.801083 959.587613 NaN NaN NaN NaN NaN NaN NaN 114.26 1 117.77 117.27 118.27 3.5109 0 0 0 0.40625 1 27819 27819 2.3027 0 1 44791 823 28303 28315 51542 51542 0.10620271291338668 TLTRLTTY 8 Unmodified _TLTRLTTY_ 0 0 0 REV__ENST00000568721.1_1_16:29934667-29937471:-|nuORF REV__ENST00000568721.1_1_16:29934667-29937471:-|nuORF MSMS UPN48_class_I_Rep_3 7 484.7881164550781 2 484.7742 967.533846 NaN NaN NaN NaN NaN NaN NaN 42.293 1 45.935 45.435 46.435 3.6415 0 0 0 0.40625 1 7734 7734 2.3027 0 1 + 44792 20539 28304 28316 51543 51543 0.048780540689335794 TLTSIPANVI 10 Unmodified _TLTSIPANVI_ 0 0 0 REV__LTR12C_dup1386|chr7:156873062-156874568:-|1.5660882132534582|0.0659381433743194|4.57|151.0|34|3|sense REV__LTR12C_dup1386|chr7:156873062-156874568:-|1.5660882132534582|0.0659381433743194|4.57|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.7924194335938 2 514.802957 1027.59136 0.035305 1.8175E-05 0.47812 0.00024614 0.51342 0.00026431 514.8029831851906 67.32 0.31329 70.583 70.345 70.658 3.2636 26 24 2 0 0 0 0.54078 1 16166 16166 6.7232 0 1 73594 + 44793 30799 28305 28317 51544 51544 0.0786689627452688 TLTSLKTL 8 Unmodified _TLTSLKTL_ 0 0 0 REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|59|2|sense REV__L1MC1_dup10062|chr13:72874769-72877736:-|1.938895557363865|0.0272154306716162|6.15|150.0|59|2|sense MSMS UPN47_class_I_Rep_3 4 438.77301025390625 2 438.773668 875.532783 NaN NaN NaN NaN NaN NaN NaN 37.997 1 41.239 40.739 41.739 3.2414 0 0 0 0.4044 1 7348 7348 4.756 0 1 + 44794 26485 28306 28318 51545 51545 0.09003839700062599 TLTTKVCSL 9 Unmodified _TLTTKVCSL_ 0 0 0 LTR12C_dup614|chr4:15785769-15787261:-|1.9873724048774852|0.0866461926995086|4.52|151.0|10|1|sense LTR12C_dup614|chr4:15785769-15787261:-|1.9873724048774852|0.0866461926995086|4.52|151.0|10|1|sense LTR12C_dup614|chr4:15785769-15787261:-|1.9873724048774852|0.0866461926995086|4.52|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 483.2558288574219 2 483.270435 964.526318 NaN NaN NaN NaN NaN NaN NaN 34.037 1 34.037 33.537 34.537 0 0 0 0 0.38478 1 6029 6029 4.3292 1.7518 1 44795 15552 28307 28319 51546 51546 0.04263578477014107 TLTTLAPLL 9 Unmodified _TLTTLAPLL_ 0 0 0 REV__ENST00000559133.5_3_15:48703189-48720097:-|nuORF REV__ENST00000559133.5_3_15:48703189-48720097:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.7959289550781 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 68 1 71.27 70.77 71.77 3.2696 0 0 0 0.381 1 16431 16431 5.2307 0.47466 1 + 44796 20155 28308 28320 51547 51547 0.10660699251184269 TLTTNQRL 8 Unmodified _TLTTNQRL_ 0 0 0 REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|41|3|anti-sense REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.76898193359375 2 473.769448 945.524344 -0.29192 -0.0001383 -0.64635 -0.00030622 -0.93828 -0.00044453 473.7689367636546 14.24 0.28503 17.627 17.505 17.79 3.3871 74 34 3 0 0 0 0.82752 1 531 531 8.5933 8.5933 1 125700 + 44797 23511 28309 28321 51548 51548 0.049402857834252245 TLTTNQRL 8 Unmodified _TLTTNQRL_ 0 0 0 REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|41|3|anti-sense REV__Harlequin-int_dup227|chr6:34999214-35000000:+|1.435193729299369|0.0801346918860232|4.16|151.0|41|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 473.769448 945.524344 -0.85102 -0.00040319 -0.19162 -9.0783E-05 -1.0426 -0.00049397 473.76920962701786 14.261 0.37282 17.63 17.536 17.908 3.3697 -0.0020547 0.00017682 NaN 8.5933 87 45 3 NaN NaN NaN NaN 0 NaN NaN 0 114750 + 44798 23511 28309 28321 0.049402857834252245 TLTTQLKF 8 Unmodified _TLTTQLKF_ 0 0 0 REV__nc|ENSG00000077097|Q02880-2|TOP2B REV__nc|ENSG00000077097|Q02880-2|TOP2B MULTI-SECPEP UPN48_class_I_Rep_3 7 475.6127014160156 2 476.279118 950.543683 0.18735 8.9233E-05 0.00032975 1.5705E-07 0.18768 8.939E-05 476.27909381072226 59.555 0.61887 63.072 62.857 63.476 3.5169 60 48 2 0 0 0 0.72333 1 12953 12953 12.532 0 1 192700 + 44799 17875 28310 28322 51549 51549 0.06643242074335376 TLTVLRSAGQ 10 Unmodified _TLTVLRSAGQ_ 0 0 0 L1MC3_dup8251|chr10:68973955-68974384:+|3.3558958900605504|0.3809305600922875|3.14|151.0|18|1|anti-sense L1MC3_dup8251|chr10:68973955-68974384:+|3.3558958900605504|0.3809305600922875|3.14|151.0|18|1|anti-sense L1MC3_dup8251|chr10:68973955-68974384:+|3.3558958900605504|0.3809305600922875|3.14|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 523.3031005859375 2 523.303655 1044.59276 0.36148 0.00018917 -0.46537 -0.00024353 -0.10389 -5.4366E-05 523.3033029502736 80.308 0.15221 83.617 83.54 83.692 3.309 36 21 2 0 0 0 0.55448 1 20099 20099 4.897 0.141 1 294130 44800 11380 28311 28323 51550 51550 0.07224530363282611 TLTWYRLF 8 Unmodified _TLTWYRLF_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MULTI-MSMS UPN48_class_I_Rep_1 5 550.3004760742188 2 550.300384 1098.58622 0.58818 0.00032367 -0.015788 -8.6879E-06 0.57239 0.00031499 550.3003639657201 64.647 0.84332 68.101 67.835 68.679 3.4541 102 64 3 0 0 0 0.82752 1 14616 14616 11.64 0 1 230260 + 44801 20383 28312 28324 51551 51551 0.040866372025675446 TLTWYRLF 8 Unmodified _TLTWYRLF_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MULTI-MSMS UPN48_class_I_Rep_2 6 550.301025390625 2 550.300384 1098.58622 0.52487 0.00028883 0.21579 0.00011875 0.74066 0.00040758 550.3004271315218 64.63 0.64952 68.109 67.72 68.37 3.4792 72 48 2 0 0 0 0.82752 1 14553 14553 11.64 0 1 182450 + 44802 20383 28312 28324 51552 51552 0.040866372025675446 TLTWYRLF 8 Unmodified _TLTWYRLF_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MULTI-MSMS UPN48_class_I_Rep_3 7 550.301025390625 2 550.300384 1098.58622 0.44355 0.00024408 -0.17206 -9.4686E-05 0.27149 0.0001494 550.3003424114419 64.465 0.90923 67.974 67.571 68.481 3.5083 132 78 2 0 0 0 0.82752 1 14452 14452 11.64 0 1 206260 + 44803 20383 28312 28324 51553 51553 0.040866372025675446 TLTWYRLF 8 Unmodified _TLTWYRLF_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MULTI-MATCH UPN48_class_I_Rep_2 6 2 550.300384 1098.58622 0.52253 0.00028755 -0.84448 -0.00046472 -0.32195 -0.00017717 550.2997716297762 64.925 0.07798 68.405 68.353 68.431 3.4792 0.15182 -0.00078804 NaN 11.64 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 116170 + 44804 20383 28312 28324 0.040866372025675446 TLTYNLLTL 9 Unmodified _TLTYNLLTL_ 0 0 0 REV__L1MB2_dup4646|chrX:18922561-18922874:+|1.0496848912957495|0.2579442684743162|2.02|151.0|4|1|sense REV__L1MB2_dup4646|chrX:18922561-18922874:+|1.0496848912957495|0.2579442684743162|2.02|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 526.314208984375 2 526.305332 1050.59611 NaN NaN NaN NaN NaN NaN NaN 71.754 1 75.129 74.629 75.629 3.3751 0 0 0 0.31276 1 17515 17515 10.074 0 1 + 44805 25740 28313 28325 51554 51554 0.07283780417287744 TLTYNLLTL 9 Unmodified _TLTYNLLTL_ 0 0 0 REV__L1MB2_dup4646|chrX:18922561-18922874:+|1.0496848912957495|0.2579442684743162|2.02|151.0|4|1|sense REV__L1MB2_dup4646|chrX:18922561-18922874:+|1.0496848912957495|0.2579442684743162|2.02|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 526.3148193359375 2 526.305332 1050.59611 NaN NaN NaN NaN NaN NaN NaN 71.694 1 74.984 74.484 75.484 3.2899 0 0 0 0.2408 1 17538 17538 13.906 0 1 + 44806 25740 28313 28325 51555 51555 0.07283780417287744 TLTYNLLTL 9 Unmodified _TLTYNLLTL_ 0 0 0 REV__L1MB2_dup4646|chrX:18922561-18922874:+|1.0496848912957495|0.2579442684743162|2.02|151.0|4|1|sense REV__L1MB2_dup4646|chrX:18922561-18922874:+|1.0496848912957495|0.2579442684743162|2.02|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 526.3146362304688 2 526.305332 1050.59611 NaN NaN NaN NaN NaN NaN NaN 72.279 1 75.506 75.006 76.006 3.2271 0 0 0 0.2408 1 17784 17784 13.906 0 1 + 44807 25740 28313 28325 51556 51556 0.07283780417287744 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS UPN47_class_I_Rep_1 2 546.3087158203125 2 546.308406 1090.60226 0.42994 0.00023488 0.46485 0.00025395 0.89479 0.00048883 546.3085970236062 75.034 0.74088 78.428 77.749 78.49 3.3937 113 67 3 0 0 0 0.0050147 3 18485 18406;18447;18485 93.166 57.039 1 745800 44808 2231 28314 28326 51557;51558;51559 51559 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS UPN47_class_I_Rep_1 2 546.308837890625 2 546.308406 1090.60226 0.432 0.00023601 0.1637 8.9432E-05 0.59571 0.00032544 546.3084306832374 75.193 0.3652 78.596 78.467 78.832 3.4034 81 31 3 0 0 0 0.026395 2 18566 18525;18566 59.368 35.348 1 363920 44809 2231 28314 28326 51560;51561 51561 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS UPN47_class_I_Rep_1 2 546.3081665039062 2 546.308406 1090.60226 0.43385 0.00023702 -0.27755 -0.00015163 0.15631 8.5392E-05 546.3081285709195 75.532 0.2501 78.935 78.82 79.07 3.4034 39 22 2 0 0 0 0.079935 1 18659 18659 38.615 25.572 1 128470 44810 2231 28314 28326 51562 51562 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS UPN47_class_I_Rep_2 3 546.3087158203125 2 546.308406 1090.60226 0.4311 0.00023551 0.19333 0.00010562 0.62442 0.00034113 546.3084180418649 75.259 0.45467 78.572 78.463 78.918 3.3127 100 42 4 0 0 0 0.0065234 3 18566 18566;18602;18639 74.2 43.563 1 409870 44811 2231 28314 28326 51563;51564;51565 51563 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS UPN47_class_I_Rep_2 3 546.3087158203125 2 546.308406 1090.60226 0.43468 0.00023747 -0.073825 -4.0331E-05 0.36086 0.00019714 546.308383395416 75.721 0.44646 79.043 78.911 79.357 3.3216 69 44 3 0 0 0 0.15547 3 18718 18718;18766;18804 24.991 11.948 1 221590 44812 2231 28314 28326 51566;51567;51568 51566 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 546.308406 1090.60226 0.44675 0.00024406 0.56683 0.00030966 1.0136 0.00055373 546.3086047608645 75.21 1.366 78.456 77.775 79.141 3.2464 0.051238 -3.2024E-05 NaN 93.166 274 136 3 NaN NaN NaN NaN 0 NaN NaN 0 637920 44813 2231 28314 28326 0.06058298648804339 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-SECPEP UPN47_class_I_Rep_1 2 528.2562255859375 2 527.800217 1053.58588 0.35433 0.00018702 -0.27578 -0.00014556 0.078546 4.1456E-05 527.8000902291218 78.205 0.075706 81.634 81.569 81.645 3.4289 13 8 2 0 0 0 0.095427 1 19439 19439 20.454 0 1 67109 44814 1943 28315 28327 51569 51569 0.06123217482695509 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-MSMS UPN47_class_I_Rep_2 3 527.8002319335938 2 527.800217 1053.58588 0.20336 0.00010733 -0.12339 -6.5124E-05 0.079971 4.2209E-05 527.8001900095321 78.332 0.22743 81.675 81.498 81.725 3.3428 32 25 2 0 0 0 0.13631 1 19462 19462 26.884 11.036 1 82236 44815 1943 28315 28327 51570 51570 0.06123217482695509 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MSMS UPN47_class_I_Rep_2 3 527.7994384765625 2 527.800217 1053.58588 NaN NaN NaN NaN NaN NaN NaN 78.471 1 81.813 81.313 82.313 3.3428 0 0 0 0.089203 1 19495 19495 26.884 11.036 1 44816 1943 28315 28327 51571 51571 0.06123217482695509 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-MSMS UPN47_class_I_Rep_3 4 527.7999877929688 2 527.800217 1053.58588 0.38815 0.00020486 -0.27008 -0.00014255 0.11807 6.2317E-05 527.8000067512378 78.566 0.42124 81.848 81.546 81.967 3.2816 82 45 2 0 0 0 0.10817 3 19573 19570;19573;19604 32.305 11.852 1 104720 44817 1943 28315 28327 51572;51573;51574 51573 0.06123217482695509 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-6|MADD nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-MSMS UPN47_class_I_Rep_3 4 527.8009643554688 2 527.800217 1053.58588 0.3891 0.00020537 -0.34039 -0.00017966 0.048703 2.5705E-05 527.7999549674444 78.942 0.5775 82.237 81.965 82.542 3.295 90 54 2 0 0 0 0.10817 4 19694 19646;19665;19694;19702 32.305 11.852 1 108060 44818 1943 28315 28327 51575;51576;51577;51578 51577 0.06123217482695509 TLVDPMHRETG 11 Unmodified _TLVDPMHRETG_ 0 0 0 REV__L1MA5_dup476|chr2:108640651-108641145:-|1.0887672735844294|0.0197507093769319|5.78|151.0|15|3|sense REV__L1MA5_dup476|chr2:108640651-108641145:-|1.0887672735844294|0.0197507093769319|5.78|151.0|15|3|sense MSMS UPN48_class_I_Rep_2 6 628.3069458007812 2 628.308612 1254.60267 NaN NaN NaN NaN NaN NaN NaN 48.515 1 52.233 51.733 52.733 3.7175 0 0 0 0.38417 1 9702 9702 1.0715 0 1 + 44819 25403 28316 28328 51579 51579 -0.01444649693644351 TLVENQLTI 9 Unmodified _TLVENQLTI_ 0 0 0 L1M4_dup19698|chr20:3939292-3939959:-|2.3128077691679074|0.1422256238274879|4.02|151.0|41|3|anti-sense;L1MB7_dup21401|chr19:38687471-38688125:+|1.2118221087914487|0.0496951298019794|4.61|151.0|30|1|anti-sense;L1M4_dup17715|chr16:75030197-75030411:+|1.3389093328256636|0.0020106087354938|9.38|151.0|12|2|anti-sense L1M4_dup19698|chr20:3939292-3939959:-|2.3128077691679074|0.1422256238274879|4.02|151.0|41|3|anti-sense L1M4_dup19698|chr20:3939292-3939959:-|2.3128077691679074|0.1422256238274879|4.02|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.7921752929688 2 515.792589 1029.57063 -0.0017314 -8.9303E-07 0.2157 0.00011126 0.21397 0.00011036 516.294628959534 45.566 0.53846 49.266 49.107 49.646 3.6999 44 29 2 0 0 0 0.43982 1 9612 9612 5.7319 0 1 73824 44820 8869 28317 28329 51580 51580 0.057023058948516336 TLVHFVAI 8 Unmodified _TLVHFVAI_ 0 0 0 REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|100|3|anti-sense REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|100|3|anti-sense MSMS UPN46_class_I_Rep_3 1 450.7200012207031 2 450.271096 898.527639 NaN NaN NaN NaN NaN NaN NaN 85.74 1 85.74 85.24 86.24 0 0 0 0 0.40581 1 20469 20469 2.8892 0 1 + 44821 24460 28318 28330 51581 51581 0.07431580628076517 TLVIHRPF 8 Unmodified _TLVIHRPF_ 0 0 0 Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|33|3|anti-sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|33|3|anti-sense Charlie29a_dup1195|chrX:53398212-53398721:+|1.0673890238057833|0.103012105596727|3.37|151.0|33|3|anti-sense MSMS UPN46_class_I_Rep_3 1 491.7957763671875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 67.055 1 67.055 66.555 67.555 0 0 0 0 0.40604 1 15246 15246 2.5775 0 1 44822 509 28319 28331 51582 51582 0.08446074267999393 TLVIPLLN 8 Unmodified _TLVIPLLN_ 0 0 0 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 MSMS UPN47_class_I_Rep_1 2 441.7876892089844 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 40.301 1 43.968 43.468 44.468 3.6668 0 0 0 0.40746 1 7976 7976 0.69038 0 1 44823 5573 28320 28332 51583 51583 0.11308733942337312 TLVIPLLN 8 Unmodified _TLVIPLLN_ 0 0 0 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 MSMS UPN47_class_I_Rep_1 2 441.7878723144531 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 40.682 1 44.354 43.854 44.854 3.6719 0 0 0 0.40604 1 8093 8093 2.5775 0 1 44824 5573 28320 28332 51584 51584 0.11308733942337312 TLVIPLLN 8 Unmodified _TLVIPLLN_ 0 0 0 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 MSMS UPN47_class_I_Rep_1 2 441.787841796875 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 40.892 1 44.564 44.064 45.064 3.6719 0 0 0 0.40746 1 8156 8156 0.69038 0 1 44825 5573 28320 28332 51585 51585 0.11308733942337312 TLVIPLLN 8 Unmodified _TLVIPLLN_ 0 0 0 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 MSMS UPN47_class_I_Rep_2 3 441.7878112792969 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 41.447 1 44.813 44.313 45.313 3.3655 0 0 0 0.40746 1 8355 8355 0.69038 0 1 44826 5573 28320 28332 51586 51586 0.11308733942337312 TLVIPLLN 8 Unmodified _TLVIPLLN_ 0 0 0 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 MSMS UPN48_class_I_Rep_1 5 441.7872619628906 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 37.991 1 41.496 40.996 41.996 3.5052 0 0 0 0.40746 1 6524 6524 0.69038 0 1 44827 5573 28320 28332 51587 51587 0.11308733942337312 TLVKNQLTI 9 Unmodified _TLVKNQLTI_ 0 0 0 L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|30|2|anti-sense;L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|49|3|anti-sense;L1MB7_dup8001|chr6:136767660-136768631:+|2.8047632359114405|0.0215211623248441|7.03|151.0|52|2|anti-sense;L1MB5_dup1685|chr3:136706087-136707513:+|3.343359930458113|0.0326438052846175|6.68|151.0|85|3|anti-sense;L1MB7_dup10440|chr9:412435-413857:+|2.382162482333236|0.0155774708060718|7.26|151.0|94|3|anti-sense;L1MB7_dup22481|chr22:21838516-21839084:+|1.2783448611050017|0.0123075553305681|6.7|151.0|31|1|anti-sense;L1MA7_dup293|chr1:147954803-147956508:-|1.6809603601603835|0.1361320525664025|3.63|151.0|116|3|anti-sense;L1MA7_dup283|chr1:145632144-145633849:-|1.4689722158391072|0.1051109774924676|3.8|151.0|117|3|anti-sense L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|30|2|anti-sense L1M4_dup4424|chr4:39857970-39858627:+|1.0591437802244883|0.014309804153353|6.21|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_2 3 515.3190307617188 2 515.318774 1028.623 NaN NaN NaN NaN NaN NaN NaN 68.041 1 71.31 70.81 71.81 3.2696 0 0 0 0.39518 1 16443 16443 1.8442 0 1 44828 8892 28321 28333 51588 51588 0.1098288902846889 TLVLPRVAR 9 Unmodified _TLVLPRVAR_ 0 0 0 MER74A_dup524|chr5:177319814-177320244:+|1.327221413451206|0.325712404031275|2.03|151.0|3|1|sense MER74A_dup524|chr5:177319814-177320244:+|1.327221413451206|0.325712404031275|2.03|151.0|3|1|sense MER74A_dup524|chr5:177319814-177320244:+|1.327221413451206|0.325712404031275|2.03|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 512.8341064453125 2 512.834926 1023.6553 0.29908 0.00015338 -0.30917 -0.00015856 -0.010096 -5.1774E-06 512.8347082642277 43.665 0.56189 43.665 43.358 43.92 0 90 54 3 0 0 0 0.32682 1 8777 8777 12.241 0.74595 1 257700 44829 16204 28322 28334 51589 51589 0.14441721222135584 TLVNQLTL 8 Unmodified _TLVNQLTL_ 0 0 0 REV__ENST00000527736.5_3_11:78781042-78926924:-|nuORF REV__ENST00000527736.5_3_11:78781042-78926924:-|nuORF MSMS UPN47_class_I_Rep_2 3 451.2711486816406 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 42.238 1 45.599 45.099 46.099 3.3611 0 0 0 0.40472 1 8593 8593 4.3292 0 1 + 44830 22823 28323 28335 51590 51590 0.07378955557271638 TLVNSPWVL 9 Unmodified _TLVNSPWVL_ 0 0 0 L1MC5_dup7680|chr9:33840386-33840908:-|1.3128678976606742|0.0048323687363213|8.09|151.0|15|3|sense L1MC5_dup7680|chr9:33840386-33840908:-|1.3128678976606742|0.0048323687363213|8.09|151.0|15|3|sense L1MC5_dup7680|chr9:33840386-33840908:-|1.3128678976606742|0.0048323687363213|8.09|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 514.7923583984375 2 514.792392 1027.57023 NaN NaN NaN NaN NaN NaN NaN 66.989 1 70.253 69.753 70.753 3.2636 0 0 0 0.085573 1 16129 16129 27.629 2.9549 1 44831 11698 28324 28336 51591 51591 0.057549309656678815 TLVPASTLAK 10 Unmodified _TLVPASTLAK_ 0 0 0 REV__HERVH48-int_dup60|chr8:122830622-122833714:-|1.1049979260825962|0.3162206287956859|1.81|151.0|63|3|sense REV__HERVH48-int_dup60|chr8:122830622-122833714:-|1.1049979260825962|0.3162206287956859|1.81|151.0|63|3|sense MSMS UPN48_class_I_Rep_2 6 500.8055419921875 2 500.8055 999.596446 NaN NaN NaN NaN NaN NaN NaN 39.754 1 43.495 42.995 43.995 3.7413 0 0 0 0.53105 1 7087 7087 1.4819 0 1 + 44832 23707 28325 28337 51592 51592 0.09663200137140393 TLVPPLSDHI 10 Unmodified _TLVPPLSDHI_ 0 0 0 REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1 REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1 MSMS UPN47_class_I_Rep_1 2 546.3087158203125 2 546.308406 1090.60226 NaN NaN NaN NaN NaN NaN NaN 75.869 1 79.272 78.772 79.772 3.4034 0 0 0 0.53105 1 18749 18749 3.2813 0 1 + 44833 20365 28326 28338 51593 51593 0.06058298648804339 TLVPPLSDHI 10 Unmodified _TLVPPLSDHI_ 0 0 0 REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1 REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1 MSMS UPN47_class_I_Rep_3 4 546.3089599609375 2 546.308406 1090.60226 NaN NaN NaN NaN NaN NaN NaN 76.291 1 79.549 79.049 80.049 3.2573 0 0 0 0.53105 1 18963 18963 9.3831 0 1 + 44834 20365 28326 28338 51594 51594 0.06058298648804339 TLVRSYSL 8 Unmodified _TLVRSYSL_ 0 0 0 L1MC4a_dup8498|chr16:11704117-11704902:+|1.7810427664239925|0.1124298135498187|3.99|151.0|37|2|anti-sense L1MC4a_dup8498|chr16:11704117-11704902:+|1.7810427664239925|0.1124298135498187|3.99|151.0|37|2|anti-sense L1MC4a_dup8498|chr16:11704117-11704902:+|1.7810427664239925|0.1124298135498187|3.99|151.0|37|2|anti-sense MSMS UPN48_class_I_Rep_1 5 469.76824951171875 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 30.053 1 33.595 33.095 34.095 3.542 0 0 0 0.40625 1 4262 4262 2.3027 0 1 44835 11625 28327 28339 51595 51595 0.052020714145328384 TLVRVMRI 8 Unmodified _TLVRVMRI_ 0 0 0 REV__nc|ENSG00000114374|O00507-2|USP9Y REV__nc|ENSG00000114374|O00507-2|USP9Y MSMS UPN47_class_I_Rep_1 2 494.3114318847656 2 494.310229 986.605906 NaN NaN NaN NaN NaN NaN NaN 63.18 1 66.539 66.039 67.039 3.3595 0 0 0 0.40746 1 14933 14933 0.69038 0 1 + 44836 18526 28328 28340 51596 51596 0.11206689941684544 TLVSLKTW 8 Unmodified _TLVSLKTW_ 0 0 0 L1MEc_dup10458|chr9:126814820-126816077:-|1.6695866135564303|0.0294021701339312|5.83|151.0|22|2|sense L1MEc_dup10458|chr9:126814820-126816077:-|1.6695866135564303|0.0294021701339312|5.83|151.0|22|2|sense L1MEc_dup10458|chr9:126814820-126816077:-|1.6695866135564303|0.0294021701339312|5.83|151.0|22|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2821960449219 2 474.28166 946.548768 0.047959 2.2746E-05 1.507 0.00071475 1.555 0.0007375 474.28224670675706 32.588 0.10637 32.588 32.552 32.659 0 10 5 3 0 0 0 0.82752 1 5614 5614 2.3027 0 1 319950 44837 12997 28329 28341 51597 51597 0.07335545936962262 TLVTFGRRR 9 Unmodified _TLVTFGRRR_ 0 0 0 REV__SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|2|1|sense REV__SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.3328247070312 2 553.333082 1104.65161 0.41215 0.00022806 -1.1388 -0.00063014 -0.72665 -0.00040208 553.3323873753166 91.764 0.16093 91.764 91.704 91.865 0 29 12 3 0 0 0 0.46434 1 22185 22185 4.3292 0 1 250810 + 44838 32184 28330 28342 51598 51598 0.10347051448275124 TLVTFGRRR 9 Unmodified _TLVTFGRRR_ 0 0 0 REV__SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|2|1|sense REV__SVA_A_dup116|chr2:86544344-86546400:-|1.7464849758241845|0.2563987768883873|2.77|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.333251953125 2 553.333082 1104.65161 0.48602 0.00026893 -0.88553 -0.00048999 -0.3995 -0.00022106 553.3325076648899 88.076 0.48406 91.463 91.264 91.748 3.3873 72 53 2 0 0 0 0.50088 1 22052 22052 0.52476 0 1 126530 + 44839 32184 28330 28342 51599 51599 0.10347051448275124 TLVTGVRNK 9 Unmodified _TLVTGVRNK_ 0 0 0 REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 494.30096435546875 2 494.300916 986.587279 0.30535 0.00015094 0.027204 1.3447E-05 0.33256 0.00016438 494.30089446039165 92.212 0.15328 92.212 92.175 92.329 0 33 13 4 0 0 0 0.48846 1 22320 22320 1.8442 0 1 2668700 + 44840 23502 28331 28343 51600 51600 0.09344851571472645 TLVTGVRNK 9 Unmodified _TLVTGVRNK_ 0 0 0 REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 494.3010559082031 2 494.300916 986.587279 0.27388 0.00013538 0.20046 9.9087E-05 0.47434 0.00023446 494.3010680945897 88.004 1.1303 91.732 91.413 92.543 3.7279 530 144 5 0 0 0 0.41259 1 20908 20908 7.2892 7.2892 1 13562000 + 44841 23502 28331 28343 51601 51601 0.09344851571472645 TLVTGVRNK 9 Unmodified _TLVTGVRNK_ 0 0 0 REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 494.300916 986.587279 0.30538 0.00015095 0.013727 6.7855E-06 0.31911 0.00015774 494.3010137057329 91.812 0.36594 91.812 91.499 91.865 0 0.050547 -0.00013935 NaN 7.2892 140 32 5 NaN NaN NaN NaN 0 NaN NaN 0 14310000 + 44842 23502 28331 28343 0.09344851571472645 TLVTGVRNK 9 Unmodified _TLVTGVRNK_ 0 0 0 REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 494.300916 986.587279 0.26086 0.00012894 0.13111 6.4808E-05 0.39197 0.00019375 494.3009242504698 88.4 1.065 91.787 91.36 92.425 3.3873 0.02543 -2.3305E-05 NaN 7.2892 430 126 4 NaN NaN NaN NaN 0 NaN NaN 0 4287300 + 44843 23502 28331 28343 0.09344851571472645 TLVTGVRNK 9 Unmodified _TLVTGVRNK_ 0 0 0 REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense REV__HAL1ME_dup7651|chr17:9475088-9475898:+|1.2690379486762984|0.0158670357460359|6.32|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 494.300916 986.587279 0.26627 0.00013162 0.14981 7.4051E-05 0.41608 0.00020567 494.3009957709923 87.976 1.3254 91.786 91.413 92.738 3.8104 0.024674 -4.8207E-06 NaN 7.2892 471 168 5 NaN NaN NaN NaN 0 NaN NaN 0 10882000 + 44844 23502 28331 28343 0.09344851571472645 TLVTLSLTQKY 11 Unmodified _TLVTLSLTQKY_ 0 0 0 REV__ENSG00000170255|ENST00000526914|MRGPRX1 REV__ENSG00000170255|ENST00000526914|MRGPRX1 MSMS UPN47_class_I_Rep_1 2 633.8707885742188 2 633.868828 1265.7231 NaN NaN NaN NaN NaN NaN NaN 89.46 1 93.134 92.634 93.634 3.6738 0 0 0 0.38417 1 22368 22368 2.9952 0 1 + 44845 20353 28332 28344 51602 51602 0.10087081571623457 TLVTLSLTQKY 11 Unmodified _TLVTLSLTQKY_ 0 0 0 REV__ENSG00000170255|ENST00000526914|MRGPRX1 REV__ENSG00000170255|ENST00000526914|MRGPRX1 MSMS UPN47_class_I_Rep_1 2 633.871826171875 2 633.868828 1265.7231 NaN NaN NaN NaN NaN NaN NaN 89.562 1 93.236 92.736 93.736 3.6738 0 0 0 0.38417 1 22394 22394 2.9952 0 1 + 44846 20353 28332 28344 51603 51603 0.10087081571623457 TLVTLSLTQKY 11 Unmodified _TLVTLSLTQKY_ 0 0 0 REV__ENSG00000170255|ENST00000526914|MRGPRX1 REV__ENSG00000170255|ENST00000526914|MRGPRX1 MSMS UPN48_class_I_Rep_1 5 633.8710327148438 2 633.868828 1265.7231 NaN NaN NaN NaN NaN NaN NaN 89.261 1 92.887 92.387 93.387 3.6255 0 0 0 0.36307 1 21428 21428 8.1555 1.0538 1 + 44847 20353 28332 28344 51604 51604 0.10087081571623457 TLVTPRGR 8 Unmodified _TLVTPRGR_ 0 0 0 ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 450.2745056152344 2 450.274701 898.534849 0.18593 8.3721E-05 -0.62265 -0.00028036 -0.43672 -0.00019664 450.2745070027881 87.59 0.63702 87.59 87.075 87.712 0 230 57 5 0 0 0 0.82752 4 20905 20905;20940;20976;21014 5.2307 0 1 18888000 44848 6445 28333 28345 51605;51606;51607;51608 51605 0.08152313228515595 TLVTPRGR 8 Unmodified _TLVTPRGR_ 0 0 0 ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.2745666503906 2 450.274701 898.534849 -0.2022 -9.1044E-05 -0.13349 -6.0109E-05 -0.33569 -0.00015115 450.27459681165465 84.185 1.1377 87.546 87.086 88.224 3.3615 455 142 5 0 0 0 0.82752 4 21055 21055;21089;21153;21186 5.2307 0 1 6870200 44849 6445 28333 28345 51609;51610;51611;51612 51609 0.08152313228515595 TLVTPRGR 8 Unmodified _TLVTPRGR_ 0 0 0 ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 450.274701 898.534849 0.12044 5.4231E-05 -0.52651 -0.00023708 -0.40607 -0.00018285 450.27441838176367 84.046 1.0362 87.612 87.226 88.263 3.5655 0.040492 -1.9167E-05 NaN 5.2307 409 132 4 NaN NaN NaN NaN 0 NaN NaN 0 5422900 44850 6445 28333 28345 0.08152313228515595 TLVTPRGR 8 Unmodified _TLVTPRGR_ 0 0 0 ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 450.274701 898.534849 0.023844 1.0736E-05 -0.455 -0.00020487 -0.43115 -0.00019414 450.274510216765 83.868 1.0925 87.466 87.029 88.121 3.5973 -0.10546 4.5237E-05 NaN 5.2307 315 134 5 NaN NaN NaN NaN 0 NaN NaN 0 11348000 44851 6445 28333 28345 0.08152313228515595 TLVTPRGR 8 Unmodified _TLVTPRGR_ 0 0 0 ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF ENST00000375897.7_1_10:27529373-27529592:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 450.274701 898.534849 0.14862 6.6921E-05 -0.54585 -0.00024578 -0.39723 -0.00017886 450.2744896588243 83.936 1.2872 87.617 87.048 88.335 3.6814 0.046091 -3.6581E-05 NaN 5.2307 439 152 5 NaN NaN NaN NaN 0 NaN NaN 0 13247000 44852 6445 28333 28345 0.08152313228515595 TLVTYVPVTTF 11 Unmodified _TLVTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31 ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MSMS UPN48_class_I_Rep_1 5 620.84326171875 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.242 1 84.804 84.304 85.304 3.5624 0 0 0 0.37149 1 19366 19366 7.609 0 1 44853 1083 28334 28346 51613 51613 0.06484007651556567 TLVTYVPVTTF 11 Unmodified _TLVTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31 ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MSMS UPN48_class_I_Rep_1 5 620.84521484375 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.251 1 84.813 84.313 85.313 3.5624 0 0 0 0.3116 1 19369 19369 11.495 0 1 44854 1083 28334 28346 51614 51614 0.06484007651556567 TLVTYVPVTTF 11 Unmodified _TLVTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31 ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MSMS UPN48_class_I_Rep_1 5 620.8452758789062 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.38 1 84.942 84.442 85.442 3.5624 0 0 0 0.2482 1 19404 19404 15.248 0 1 44855 1083 28334 28346 51615 51615 0.06484007651556567 TLVTYVPVTTF 11 Unmodified _TLVTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31 ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MSMS UPN48_class_I_Rep_2 6 620.8446655273438 2 620.844822 1239.67509 NaN NaN NaN NaN NaN NaN NaN 81.096 1 84.753 84.253 85.253 3.6567 0 0 0 0.2482 1 19245 19245 15.248 0 1 44856 1083 28334 28346 51616 51616 0.06484007651556567 TLVTYVPVTTF 11 Unmodified _TLVTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31 ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MULTI-MSMS UPN48_class_I_Rep_3 7 620.8446044921875 2 620.844822 1239.67509 0.61945 0.00038458 -0.060594 -3.762E-05 0.55885 0.00034696 620.844590872318 81.275 0.18869 84.96 84.834 85.022 3.685 29 24 2 0 0 0 0.26266 2 19252 19214;19252 19.362 4.1135 1 132860 44857 1083 28334 28346 51617;51618 51618 0.06484007651556567 TLVTYVTVT 9 Unmodified _TLVTYVTVT_ 0 0 0 ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENST00000480540.1_1_14:59261390-59261744:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.7855529785156 2 498.784233 995.553913 NaN NaN NaN NaN NaN NaN NaN 68.057 1 71.421 70.921 71.921 3.3646 0 0 0 0.38639 1 16405 16405 3.9444 0 1 44858 6996 28335 28347 51619 51619 0.055958050089202516 TLVYHVVGV 9 Unmodified _TLVYHVVGV_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN46_class_I_Rep_3 1 493.7870788574219 2 493.78711 985.559667 0.22073 0.00010899 -0.22628 -0.00011174 -0.0055538 -2.7424E-06 493.78709301720545 57.943 0.49586 57.943 57.649 58.145 0 63 54 2 0 0 0 0.12799 2 12701 12701;12715 28.487 12.64 1 194700 44859 5270 28336 28348 51620;51621 51620 0.06630948311237717 TLVYHVVGV 9 Unmodified _TLVYHVVGV_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS UPN47_class_I_Rep_2 3 493.787109375 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 52.589 1 55.922 55.422 56.422 3.3332 0 0 0 0.1074 1 11739 11739 23.148 5.0134 1 44860 5270 28336 28348 51622 51622 0.06630948311237717 TLWARPRR 8 Unmodified _TLWARPRR_ 0 0 0 ENST00000535220.1_1_12:6933100-6934099:+|nuORF;ENSG00000250510|ENST00000311268|GPR162 ENST00000535220.1_1_12:6933100-6934099:+|nuORF ENST00000535220.1_1_12:6933100-6934099:+|nuORF MSMS UPN47_class_I_Rep_3 4 528.3135375976562 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.634 1 93.032 92.532 93.532 3.3976 0 0 0 0.40738 1 22473 22473 0.79363 0 1 44861 5740 28337 28349 51623 51623 0.08970799622352388 TLWDSYLEV 9 Unmodified _TLWDSYLEV_ 0 0 0 REV__ENST00000466151.1_1_1:17402167-17409162:-|nuORF REV__ENST00000466151.1_1_1:17402167-17409162:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 563.277099609375 2 563.276772 1124.53899 0.43129 0.00024294 -0.0048884 -2.7535E-06 0.42641 0.00024018 563.2766729413797 79.837 0.42599 79.837 79.791 80.217 0 94 41 3 0 0 0 0.066041 1 18766 18766 42.095 7.6928 1 904270 + 44862 18622 28338 28350 51624 51624 -0.018296868591050952 TLWDSYLEV 9 Unmodified _TLWDSYLEV_ 0 0 0 REV__ENST00000466151.1_1_1:17402167-17409162:-|nuORF REV__ENST00000466151.1_1_1:17402167-17409162:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 563.2769775390625 2 563.276772 1124.53899 0.45665 0.00025722 0.22507 0.00012677 0.68171 0.00038399 563.276829642386 75.179 1.1389 78.492 78.115 79.254 3.3127 295 113 4 0 0 0 0.066041 2 18539 18503;18539 42.095 4.1474 1 952050 + 44863 18622 28338 28350 51625;51626 51626 -0.018296868591050952 TLWHPRRQ 8 Unmodified _TLWHPRRQ_ 0 0 0 REV__ENST00000264449.14_2_4:42629066-42658940:-|nuORF REV__ENST00000264449.14_2_4:42629066-42658940:-|nuORF MSMS UPN48_class_I_Rep_3 7 547.3046264648438 2 547.304324 1092.5941 NaN NaN NaN NaN NaN NaN NaN 22.791 1 26.542 26.042 27.042 3.7507 0 0 0 0.40746 1 2384 2384 0.69038 0 1 + 44864 21580 28339 28351 51627 51627 0.05150209242697201 TLWNQELYI 9 Unmodified _TLWNQELYI_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MSMS UPN47_class_I_Rep_3 4 590.3047485351562 2 590.305864 1178.59717 NaN NaN NaN NaN NaN NaN NaN 81.58 1 84.903 84.403 85.403 3.3231 0 0 0 0.37692 1 20420 20420 6.2058 0 1 44865 1049 28340 28352 51628 51628 0.015019947861901528 TLWRRPRR 8 Unmodified _TLWRRPRR_ 0 0 0 REV__ENST00000549291.1_1_8:86157795-86157939:-|nuORF REV__ENST00000549291.1_1_8:86157795-86157939:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 570.8486938476562 2 570.84669 1139.67883 0.21806 0.00012448 1.8652 0.0010648 2.0833 0.0011892 570.8478661502742 30.119 0.051985 30.119 30.086 30.138 0 10 4 3 0 0 0 0.82752 1 4862 4862 0.69038 0.16561 1 89023 + 44866 22950 28341 28353 51629 51629 0.11457579779289517 TLWSSPSQAH 10 Unmodified _TLWSSPSQAH_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|232|1|anti-sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|232|1|anti-sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|232|1|anti-sense MSMS UPN47_class_I_Rep_3 4 557.2714233398438 2 557.269813 1112.52507 NaN NaN NaN NaN NaN NaN NaN 32.396 1 35.682 35.182 36.182 3.2867 0 0 0 0.53105 1 5647 5647 1.4819 0.68827 1 44867 9295 28342 28354 51630 51630 -0.026689195675317023 TLWVDPYEV 9 Unmodified _TLWVDPYEV_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_1 2 561.2797241210938 2 561.279315 1120.54408 0.41361 0.00023215 -0.11845 -6.6485E-05 0.29516 0.00016567 561.279187113456 78.356 0.62439 81.802 81.499 82.123 3.4456 92 62 2 0 0 0 0.052902 7 19532 19402;19420;19457;19488;19497;19532;19567 47.749 30.636 1 163350 44868 2808 28343 28355 51631;51632;51633;51634;51635;51636;51637 51636 -0.011373829964895776 TLWVDPYEV 9 Unmodified _TLWVDPYEV_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_2 3 561.2802124023438 2 561.279315 1120.54408 0.48723 0.00027347 -0.11837 -6.6437E-05 0.36886 0.00020703 561.2792037482133 78.462 0.63501 81.804 81.537 82.172 3.3428 126 69 2 0 0 0 0.052902 7 19522 19445;19458;19479;19481;19485;19522;19569 47.749 30.636 1 189640 44869 2808 28343 28355 51638;51639;51640;51641;51642;51643;51644 51643 -0.011373829964895776 TLWVDPYEV 9 Unmodified _TLWVDPYEV_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MSMS UPN47_class_I_Rep_2 3 561.2799682617188 2 561.279315 1120.54408 NaN NaN NaN NaN NaN NaN NaN 78.864 1 82.22 81.72 82.72 3.3554 0 0 0 0.31276 1 19606 19606 10.074 3.3508 1 44870 2808 28343 28355 51645 51645 -0.011373829964895776 TLWVDPYEV 9 Unmodified _TLWVDPYEV_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_3 4 561.2791748046875 2 561.279315 1120.54408 0.46467 0.00026081 -0.32733 -0.00018373 0.13733 7.7082E-05 561.2793018097243 78.307 0.047531 81.589 81.561 81.609 3.2816 6 5 2 0 0 0 0.30034 1 19523 19523 13.906 7.1829 1 50994 44871 2808 28343 28355 51646 51646 -0.011373829964895776 TLWVDPYEV 9 Unmodified _TLWVDPYEV_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_3 4 561.279296875 2 561.279315 1120.54408 0.4654 0.00026122 -0.0409 -2.2956E-05 0.4245 0.00023826 561.2792319620086 78.542 0.5805 81.824 81.602 82.182 3.2816 97 60 3 0 0 0 0.097406 4 19599 19559;19565;19599;19618 34.402 21.359 1 174170 44872 2808 28343 28355 51647;51648;51649;51650 51649 -0.011373829964895776 TLYDSRLFV 9 Unmodified _TLYDSRLFV_ 0 0 0 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron;ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|2|intron;ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|7|intron;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 557.3004150390625 2 557.300581 1112.58661 0.40931 0.00022811 0.022623 1.2608E-05 0.43194 0.00024072 557.3004994913763 61.956 0.72933 65.324 65.083 65.812 3.3681 111 53 3 0 0 0 0.15547 3 14581 14581;14619;14678 24.991 8.8419 1 200790 44873 4316 28344 28356 51651;51652;51653 51651 0.03482012131780721 TLYDSRLFV 9 Unmodified _TLYDSRLFV_ 0 0 0 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron;ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|2|intron;ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|7|intron;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 557.299072265625 2 557.300581 1112.58661 0.44327 0.00024704 -0.22422 -0.00012496 0.21906 0.00012208 557.3004184744227 62.295 0.70566 65.554 65.243 65.948 3.2594 95 46 3 0 0 0 0.12096 5 14650 14650;14676;14716;14767;14815 29.841 11.694 1 242150 44874 4316 28344 28356 51654;51655;51656;51657;51658 51654 0.03482012131780721 TLYDSRLFV 9 Unmodified _TLYDSRLFV_ 0 0 0 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron;ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|2|intron;ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|7|intron;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron ENSG00000167632.18,TRAPPC9,chr8,-,I21.1,140216055,140221458|95|5.91|3|intron MULTI-MSMS UPN47_class_I_Rep_3 4 557.2999267578125 2 557.300581 1112.58661 0.40121 0.0002236 -0.078445 -4.3717E-05 0.32277 0.00017988 557.3004152590036 62.319 0.75681 65.486 65.216 65.973 3.1667 103 47 3 0 0 0 0.15547 4 14724 14715;14724;14805;14853 24.991 8.8419 1 206370 44875 4316 28344 28356 51659;51660;51661;51662 51660 0.03482012131780721 TLYEAVLATV 10 Unmodified _TLYEAVLATV_ 0 0 0 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 MSMS UPN46_class_I_Rep_3 1 540.2896728515625 2 540.30279 1078.59103 NaN NaN NaN NaN NaN NaN NaN 51.896 1 51.896 51.396 52.396 0 0 0 0 0.53105 1 11061 11061 24.021 7.0783 1 + 44876 17989 28345 28357 51663 51663 0.05487476554662862 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS UPN46_class_I_Rep_3 1 540.2890014648438 2 540.290214 1078.56587 0.29963 0.00016189 -0.26343 -0.00014233 0.036195 1.9556E-05 540.2900450241505 51.827 0.35105 51.827 51.667 52.018 0 66 41 2 0 0 0 0.026894 3 11021 11021;11027;11071 59.052 31.424 1 302940 44877 5456 28346 28358 51664;51665;51666 51664 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MSMS UPN46_class_I_Rep_3 1 540.2992553710938 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 52.215 1 52.215 51.715 52.715 0 0 0 0 0.38073 1 11152 11152 5.2969 0 1 44878 5456 28346 28358 51667 51667 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS UPN47_class_I_Rep_1 2 540.2906494140625 2 540.290214 1078.56587 0.16569 8.9523E-05 -0.070441 -3.8059E-05 0.095253 5.1464E-05 540.2901250936663 46.744 0.82145 50.44 50.117 50.938 3.6951 124 52 3 0 0 0 0.014369 6 9952 9872;9912;9952;9996;10039;10063 67.081 39.452 1 378820 44879 5456 28346 28358 51668;51669;51670;51671;51672;51673 51670 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS UPN47_class_I_Rep_2 3 540.2901611328125 2 540.290214 1078.56587 0.2596 0.00014026 -0.15605 -8.4312E-05 0.10355 5.5949E-05 540.290106625402 47.146 0.72042 50.498 50.19 50.911 3.3515 131 47 4 0 0 0 0.0047467 5 10070 10032;10070;10108;10144;10186 93.938 52.098 1 334400 44880 5456 28346 28358 51674;51675;51676;51677;51678 51675 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MSMS UPN47_class_I_Rep_2 3 540.2890014648438 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 47.559 1 50.908 50.408 51.408 3.3492 0 0 0 0.18341 1 10220 10220 17.443 5.202 1 44881 5456 28346 28358 51679 51679 0.029734217520854145 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS UPN47_class_I_Rep_3 4 540.2904052734375 2 540.290214 1078.56587 0.31912 0.00017242 -0.10865 -5.8701E-05 0.21048 0.00011372 540.2901198094542 47.222 0.76807 50.466 50.096 50.864 3.2439 119 52 3 0 0 0 0.0061843 4 10201 10110;10154;10201;10244 75.571 41.169 1 295210 44882 5456 28346 28358 51680;51681;51682;51683 51682 0.029734217520854145 TLYEHNNEL 9 Unmodified _TLYEHNNEL_ 0 0 0 ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS ENST00000548880.1_1_12:53709415-53715282:-|nuORF ENST00000548880.1_1_12:53709415-53715282:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 566.7667846679688 2 566.767103 1131.51965 -0.057236 -3.244E-05 -0.05012 -2.8407E-05 -0.10736 -6.0846E-05 566.7671861311205 33.808 0.51069 37.506 37.26 37.771 3.6983 62 35 2 0 0 0 0.23293 1 6017 6017 18.146 0.011366 1 117240 44883 1403 28347 28359 51684 51684 -0.0408464315000856 TLYEHNNEL 9 Unmodified _TLYEHNNEL_ 0 0 0 ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS ENST00000548880.1_1_12:53709415-53715282:-|nuORF ENST00000548880.1_1_12:53709415-53715282:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 566.7666015625 2 566.767103 1131.51965 0.045896 2.6013E-05 -0.04696 -2.6615E-05 -0.0010633 -6.0262E-07 566.7669152448327 34.163 0.59403 37.603 37.252 37.846 3.4398 60 39 2 0 0 0 0.20276 4 6137 6091;6137;6147;6214 20.454 20.454 1 120170 44884 1403 28347 28359 51685;51686;51687;51688 51686 -0.0408464315000856 TLYEHNNEL 9 Unmodified _TLYEHNNEL_ 0 0 0 ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS ENST00000548880.1_1_12:53709415-53715282:-|nuORF ENST00000548880.1_1_12:53709415-53715282:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 566.766357421875 2 566.767103 1131.51965 -0.12107 -6.8618E-05 -0.32242 -0.00018274 -0.44349 -0.00025136 566.7668169211317 34.291 0.65727 37.565 37.279 37.936 3.2748 75 45 2 0 0 0 0.13244 1 6193 6193 27.629 5.8822 1 76802 44885 1403 28347 28359 51689 51689 -0.0408464315000856 TLYERIVSR 9 Unmodified _TLYERIVSR_ 0 0 0 nc|ENSG00000112667|O43598-2|DNPH1;ENSG00000112667|ENST00000230431|DNPH1 nc|ENSG00000112667|O43598-2|DNPH1 nc|ENSG00000112667|O43598-2|DNPH1 MSMS UPN46_class_I_Rep_3 1 568.82568359375 2 568.824755 1135.63496 NaN NaN NaN NaN NaN NaN NaN 42.173 1 42.173 41.673 42.673 0 0 0 0 0.32573 1 8329 8329 9.3831 0.78985 1 44886 2020 28348 28360 51690 51690 0.07256505771670163 TLYGLSVLL 9 Unmodified _TLYGLSVLL_ 0 0 0 nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 MSMS UPN47_class_I_Rep_2 3 489.79718017578125 2 489.797143 977.579734 NaN NaN NaN NaN NaN NaN NaN 90.516 1 93.973 93.473 94.473 3.4571 0 0 0 0.089203 1 22451 22451 26.884 5.137 1 44887 865 28349 28361 51691 51691 0.09004699251181592 TLYIVIAY 8 Unmodified _TLYIVIAY_ 0 0 0 REV__L1MB7_dup14625|chr11:14807269-14807654:+|1.8023070524647853|0.0295086715140927|5.93|151.0|32|3|anti-sense REV__L1MB7_dup14625|chr11:14807269-14807654:+|1.8023070524647853|0.0295086715140927|5.93|151.0|32|3|anti-sense MSMS UPN46_class_I_Rep_3 1 478.2765197753906 2 478.278586 954.54262 NaN NaN NaN NaN NaN NaN NaN 16.728 1 16.728 16.228 17.228 0 0 0 0 0.40581 1 1202 1202 2.8892 0 1 + 44888 26143 28350 28362 51692 51692 0.0635302770541557 TLYLHEITF 9 Unmodified _TLYLHEITF_ 0 0 0 L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 568.802734375 2 568.802957 1135.59136 0.44497 0.0002531 -0.11085 -6.305E-05 0.33413 0.00019005 568.8027789854458 72.601 0.17041 76.074 75.975 76.145 3.4732 21 12 3 0 0 0 0.35081 1 17057 17057 10.824 0 1 130170 44889 9779 28351 28363 51693 51693 0.0289889627449611 TLYLHEITF 9 Unmodified _TLYLHEITF_ 0 0 0 L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.8030395507812 2 568.802957 1135.59136 0.4787 0.00027229 -0.22816 -0.00012978 0.25054 0.00014251 568.8028674583929 72.315 0.60074 75.879 75.597 76.198 3.5645 84 57 2 0 0 0 0.26948 1 16949 16949 15.847 0 1 210930 44890 9779 28351 28363 51694 51694 0.0289889627449611 TLYLHEITF 9 Unmodified _TLYLHEITF_ 0 0 0 L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense L1MA4A_dup3241|chr9:33985375-33985739:+|1.505667277860034|0.0109699795407483|7.1|151.0|28|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.8025512695312 2 568.802957 1135.59136 0.50936 0.00028973 -0.33365 -0.00018978 0.17571 9.9945E-05 568.8027303826098 72.225 0.35179 75.752 75.55 75.902 3.5266 59 36 2 0 0 0 0.26948 1 16842 16842 15.847 0 1 143610 44891 9779 28351 28363 51695 51695 0.0289889627449611 TLYLVVLS 8 Unmodified _TLYLVVLS_ 0 0 0 REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|33|3|sense REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|33|3|sense MSMS UPN48_class_I_Rep_2 6 454.2801513671875 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 41.776 1 45.527 45.027 46.027 3.7508 0 0 0 0.40604 1 7662 7662 2.5775 0 1 + 44892 27931 28352 28364 51696 51696 0.08561027705434299 TLYNTEVLL 9 Unmodified _TLYNTEVLL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MSMS UPN46_class_I_Rep_3 1 533.2944946289062 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 76.096 1 76.096 75.596 76.596 0 0 0 0 0.04168 1 17732 17732 39.95 3.8227 1 44893 3600 28353 28365 51697 51697 0.04567190037619184 TLYNTEVLL 9 Unmodified _TLYNTEVLL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MSMS UPN46_class_I_Rep_3 1 533.296142578125 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 76.184 1 76.184 75.684 76.684 0 0 0 0 0.10941 1 17757 17757 22.736 0.98964 1 44894 3600 28353 28365 51698 51698 0.04567190037619184 TLYNTEVLL 9 Unmodified _TLYNTEVLL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_1 2 533.2949829101562 2 533.294965 1064.57538 0.34424 0.00018358 0.05846 3.1176E-05 0.4027 0.00021476 533.2948379664566 71.238 1.023 74.613 74.23 75.253 3.3751 207 87 4 0 0 0 0.0050147 5 17396 17287;17323;17358;17396;17441 110.55 44.096 1 765420 44895 3600 28353 28365 51699;51700;51701;51702;51703 51702 0.04567190037619184 TLYNTEVLL 9 Unmodified _TLYNTEVLL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_2 3 533.2951049804688 2 533.294965 1064.57538 0.30008 0.00016003 0.066684 3.5562E-05 0.36677 0.00019559 533.2948458118661 71.492 1.0611 74.781 74.401 75.462 3.2899 217 95 3 0 0 0 0.0074183 4 17516 17398;17436;17476;17516 110.55 44.096 1 731000 44896 3600 28353 28365 51704;51705;51706;51707 51707 0.04567190037619184 TLYNTEVLL 9 Unmodified _TLYNTEVLL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_3 4 533.2951049804688 2 533.294965 1064.57538 0.40996 0.00021863 -0.035185 -1.8764E-05 0.37478 0.00019987 533.2947946972206 71.512 1.2573 74.73 74.381 75.638 3.2188 231 106 4 0 0 0 0.0074183 2 17533 17533;17570 110.55 44.096 1 1017600 44897 3600 28353 28365 51708;51709 51708 0.04567190037619184 TLYRAQALL 9 Unmodified _TLYRAQALL_ 0 0 0 Tigger8_dup387|chr7:36541148-36541556:+|1.1487950892416705|0.0143936201127596|6.32|149.0|20|1|anti-sense Tigger8_dup387|chr7:36541148-36541556:+|1.1487950892416705|0.0143936201127596|6.32|149.0|20|1|anti-sense Tigger8_dup387|chr7:36541148-36541556:+|1.1487950892416705|0.0143936201127596|6.32|149.0|20|1|anti-sense MSMS UPN48_class_I_Rep_3 7 524.8113403320312 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 53.367 1 56.951 56.451 57.451 3.5836 0 0 0 0.38478 1 11116 11116 4.3292 1.7518 1 44898 33460 28354 28366 51710 51710 0.08578022231267823 TLYRVYVH 8 Unmodified _TLYRVYVH_ 0 0 0 PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|198|3|anti-sense PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|198|3|anti-sense PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|198|3|anti-sense MSMS UPN48_class_I_Rep_1 5 525.7904052734375 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 28.73 1 32.287 31.787 32.787 3.5571 0 0 0 0.40738 1 3888 3888 0.79363 0 1 44899 16878 28355 28367 51711 51711 0.04301466542756316 TLYTIHELK 9 Unmodified _TLYTIHELK_ 0 0 0 REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.31640625 2 559.316232 1116.61791 0.40992 0.00022927 -0.38392 -0.00021473 0.026 1.4542E-05 559.3160443129831 58.709 0.73544 62.126 61.792 62.527 3.4171 80 47 2 0 0 0 0.36392 2 13564 13564;13653 10.074 0 1 260530 + 44900 23442 28356 28368 51712;51713 51712 0.06426585165831966 TLYTIHELK 9 Unmodified _TLYTIHELK_ 0 0 0 REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.3165283203125 2 559.316232 1116.61791 0.51633 0.00028879 -0.34772 -0.00019449 0.1686 9.4303E-05 559.3160214423225 58.934 0.83109 62.216 61.889 62.72 3.2818 93 53 2 0 0 0 0.36392 4 13667 13667;13708;13750;13796 10.074 0 1 187330 + 44901 23442 28356 28368 51714;51715;51716;51717 51714 0.06426585165831966 TLYTIHELK 9 Unmodified _TLYTIHELK_ 0 0 0 REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.316162109375 2 559.316232 1116.61791 0.34755 0.00019439 -0.25993 -0.00014539 0.087619 4.9007E-05 559.3160995197652 59.114 0.95089 62.28 61.854 62.805 3.1658 81 60 3 0 0 0 0.36392 3 13764 13764;13804;13844 10.074 0 1 193130 + 44902 23442 28356 28368 51718;51719;51720 51718 0.06426585165831966 TLYTIHELK 9 Unmodified _TLYTIHELK_ 0 0 0 REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense REV__HAL1_dup8968|chr6:78968634-78969128:-|1.6761676302629709|0.1751106911317742|3.26|151.0|4|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 559.316232 1116.61791 0.34755 0.00019439 -0.25993 -0.00014539 0.087619 4.9007E-05 559.3160995197652 59.114 0.95089 62.28 61.854 62.805 3.1658 0.072375 7.3146E-05 NaN 10.074 81 60 3 NaN NaN NaN NaN 0 NaN NaN 0 193130 + 44903 23442 28356 28368 0.06426585165831966 TLYTWVASD 9 Unmodified _TLYTWVASD_ 0 0 0 REV__MLT1N2_dup4783|chr16:23947846-23948148:+|1.1301314651506795|0.0034872345638778|8.34|151.0|11|1|anti-sense REV__MLT1N2_dup4783|chr16:23947846-23948148:+|1.1301314651506795|0.0034872345638778|8.34|151.0|11|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.2557983398438 2 528.25584 1054.49713 0.21802 0.00011517 0.32281 0.00017053 0.54084 0.0002857 528.256008118094 78.482 0.22866 81.825 81.795 82.023 3.3428 32 24 2 0 0 0 0.41259 1 19516 19516 7.2892 0 1 96328 + 44904 31805 28357 28369 51721 51721 -0.027942425476112476 TLYVLFFF 8 Unmodified _TLYVLFFF_ 0 0 0 REV__L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|305|3|anti-sense REV__L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|305|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 525.764892578125 2 525.288954 1048.56336 0.46928 0.00024651 -3.1568 -0.0016582 -2.6875 -0.0014117 525.2880700174073 64.521 0.11525 68.029 67.951 68.067 3.5083 10 9 2 0 0 0 0.72333 1 14492 14492 10.183 0 1 39830 + 44905 29413 28358 28370 51722 51722 0.04101618085064729 TLYYFKYI 8 Unmodified _TLYYFKYI_ 0 0 0 REV__ENST00000483298.1_1_10:64953077-64954292:-|nuORF REV__ENST00000483298.1_1_10:64953077-64954292:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 555.2599487304688 2 555.797143 1109.57973 0.42401 0.00023566 -1.033 -0.00057415 -0.60902 -0.00033849 555.7965916569626 48.867 0.50786 52.102 51.902 52.409 3.2345 40 29 2 0 0 0 0.72333 1 10609 10609 4.756 0 1 72223 + 44906 22583 28359 28371 51723 51723 0.02932699251186932 TMCMTTWPE 9 Unmodified _TMCMTTWPE_ 0 0 0 REV__MLT1H_dup6229|chr10:103102120-103102508:+|1.356324635675553|0.1325735185325497|3.35|151.0|3|1|sense REV__MLT1H_dup6229|chr10:103102120-103102508:+|1.356324635675553|0.1325735185325497|3.35|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 550.2172241210938 2 550.216488 1098.41842 NaN NaN NaN NaN NaN NaN NaN 41.957 1 45.318 44.818 45.818 3.3611 0 0 0 0.39518 1 8507 8507 1.8442 1.0506 1 + 44907 31746 28360 28372 51724 51724 -0.1268487744025606 TMEHYYTA 8 Unmodified _TMEHYYTA_ 0 0 0 ENST00000466828.5_1_10:105642444-105658073:-|nuORF;ENSG00000107960|ENST00000224950|STN1 ENST00000466828.5_1_10:105642444-105658073:-|nuORF ENST00000466828.5_1_10:105642444-105658073:-|nuORF MSMS UPN47_class_I_Rep_1 2 508.2115173339844 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 26.963 1 30.729 30.229 31.229 3.7662 0 0 0 0.40604 1 3939 3939 2.5775 0 1 44908 1849 28361 28373 51725 51725 -0.09494731004940604 TMKCIQLTMC 10 Unmodified _TMKCIQLTMC_ 0 0 0 REV__L1MD1_dup5592|chr15:56212705-56213772:+|1.719985029875749|0.018018782597297|6.58|150.0|41|3|sense REV__L1MD1_dup5592|chr15:56212705-56213772:+|1.719985029875749|0.018018782597297|6.58|150.0|41|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 586.2964477539062 2 586.270741 1170.52693 0.38983 0.00022855 -3.2232 -0.0018897 -2.8334 -0.0016611 586.2670894739896 58.207 0.37887 61.644 61.455 61.834 3.437 67 24 4 0 0 0 0.84575 1 13428 13428 6.2058 1.4498 1 83608 + 44909 27357 28362 28374 51726 51726 -0.05151409461450385 TMKKKNKVF 9 Unmodified _TMKKKNKVF_ 0 0 0 L1PBa_dup1536|chr10:5783254-5784958:-|4.94935974438252|0.3381963195356199|3.87|151.0|41|2|sense L1PBa_dup1536|chr10:5783254-5784958:-|4.94935974438252|0.3381963195356199|3.87|151.0|41|2|sense L1PBa_dup1536|chr10:5783254-5784958:-|4.94935974438252|0.3381963195356199|3.87|151.0|41|2|sense MSMS UPN48_class_I_Rep_3 7 562.3345947265625 2 562.336444 1122.65834 NaN NaN NaN NaN NaN NaN NaN 108.83 1 112.51 112.01 113.01 3.6751 0 0 0 0.34878 1 25804 25804 8.1555 0.24537 1 44910 15373 28363 28375 51727 51727 0.10191228284611498 TMKTKKKQ 8 Unmodified _TMKTKKKQ_ 0 0 0 REV__ENST00000556425.2_1_15:21937379-21938108:-|nuORF REV__ENST00000556425.2_1_15:21937379-21938108:-|nuORF MSMS UPN47_class_I_Rep_1 2 496.79815673828125 2 496.799694 991.584836 NaN NaN NaN NaN NaN NaN NaN 14.05 1 17.515 17.015 18.015 3.4655 0 0 0 0.40746 1 476 476 0.69038 0 1 + 44911 20704 28364 28376 51728 51728 0.0887067984215264 TMKTKNGK 8 Unmodified _TMKTKNGK_ 0 0 0 REV__nc|ENSG00000101605|P52179-2|MYOM1 REV__nc|ENSG00000101605|P52179-2|MYOM1 MULTI-MSMS UPN48_class_I_Rep_1 5 454.25482177734375 2 454.25512 906.495686 0.020384 9.2593E-06 -0.26076 -0.00011845 -0.24037 -0.00010919 454.2550029190713 105.56 0.5863 109.19 109.09 109.67 3.6277 103 75 2 0 0 0 0.82752 1 25556 25556 0.69038 0 1 480250 + 44912 18169 28365 28377 51729 51729 0.03869844882626694 TMKVVNLP 8 Unmodified _TMKVVNLP_ 0 0 0 ENST00000604687.1_1_21:10475839-10476034:-|nuORF ENST00000604687.1_1_21:10475839-10476034:-|nuORF ENST00000604687.1_1_21:10475839-10476034:-|nuORF MSMS UPN48_class_I_Rep_2 6 451.2629699707031 2 451.262413 900.510274 NaN NaN NaN NaN NaN NaN NaN 118.7 1 122.36 121.86 122.86 3.6631 0 0 0 0.40746 1 28468 28468 0.69038 0 1 44913 7671 28366 28378 51730 51730 0.05603917030782668 TMLARLASA 9 Oxidation (M) _TM(Oxidation (M))LARLASA_ TM(1)LARLASA TM(94)LARLASA 0 0 1 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_1 2 475.2597351074219 2 475.260402 948.506251 -0.31602 -0.00015019 -0.52588 -0.00024993 -0.8419 -0.00040012 475.2600132634309 34.108 1.2121 37.793 37.376 38.588 3.6859 204 92 4 0 0 0 0.0047467 4 6117 6036;6078;6117;6158 107.56 65.608 1 935220 44914 4633 28367 28379 51731;51732;51733;51734 51733 147 0.029938275370682277 TMLARLASA 9 Oxidation (M) _TM(Oxidation (M))LARLASA_ 0 0 1 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 475.260402 948.506251 -0.2775 -0.00013188 -0.77346 -0.0003676 -1.051 -0.00049948 475.2599357987888 34.301 1.2211 37.741 37.373 38.595 3.4398 -0.040678 -3.1553E-05 NaN 107.56 198 87 4 NaN NaN NaN NaN 0 NaN NaN 0 1071700 44915 4633 28367 28379 147 0.029938275370682277 TMLARLASA 9 Oxidation (M) _TM(Oxidation (M))LARLASA_ 0 0 1 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 475.260402 948.506251 -0.52722 -0.00025057 -0.85166 -0.00040476 -1.3789 -0.00065533 475.2599223929181 34.546 1.417 37.81 37.403 38.82 3.2639 0.028701 -0.00010588 NaN 107.56 242 105 4 NaN NaN NaN NaN 0 NaN NaN 0 1049500 44916 4633 28367 28379 147 0.029938275370682277 TMLARLASA 9 Unmodified _TMLARLASA_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_1 2 467.26251220703125 2 467.262945 932.511337 -0.184 -8.5975E-05 -0.29493 -0.00013781 -0.47893 -0.00022378 467.2626896706348 45.167 0.75406 48.866 48.504 49.258 3.6999 95 44 3 0 0 0 0.056914 1 9446 9446 46.022 27.876 1 221960 44917 4633 28367 28380 51735 51735 0.042381313996770587 TMLARLASA 9 Unmodified _TMLARLASA_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_2 3 467.2625427246094 2 467.262945 932.511337 -0.18114 -8.4639E-05 -0.27018 -0.00012624 -0.45132 -0.00021088 467.26274772743034 45.519 0.8834 48.873 48.512 49.395 3.3535 95 55 2 0 0 0 0.061655 2 9632 9538;9632 43.982 17.098 1 272720 44918 4633 28367 28380 51736;51737 51737 0.042381313996770587 TMLARLASA 9 Unmodified _TMLARLASA_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS UPN47_class_I_Rep_3 4 467.26275634765625 2 467.262945 932.511337 -0.2419 -0.00011303 -0.20177 -9.4279E-05 -0.44367 -0.00020731 467.26278371888867 45.73 0.77404 48.974 48.585 49.359 3.2441 88 46 2 0 0 0 0.10956 1 9727 9727 32.037 16.19 1 305750 44919 4633 28367 28380 51738 51738 0.042381313996770587 TMLHVPDGSF 10 Unmodified _TMLHVPDGSF_ 0 0 0 REV__Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|19|3|anti-sense REV__Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|19|3|anti-sense MSMS UPN48_class_I_Rep_1 5 552.262451171875 2 552.263142 1102.51173 NaN NaN NaN NaN NaN NaN NaN 60.649 1 64.123 63.623 64.623 3.4737 0 0 0 0.53105 1 13434 13434 8.7454 0.58988 1 + 44920 17374 28368 28381 51739 51739 -0.035424936711251576 TMLKSLLRY 9 Unmodified _TMLKSLLRY_ 0 0 0 ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENST00000428265.5_1_2:204103762-204143319:+|nuORF ENSG00000119004|ENST00000356079|CYP20A1 ENSG00000119004|ENST00000356079|CYP20A1 MSMS UPN48_class_I_Rep_3 7 562.8304443359375 2 562.828452 1123.64235 NaN NaN NaN NaN NaN NaN NaN 48.076 1 51.71 51.21 52.21 3.6339 0 0 0 0.39518 1 9504 9504 1.8442 1.0506 1 44921 2269 28369 28382 51740 51740 0.08547522047729217 TMLPVLFL 8 Unmodified _TMLPVLFL_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|247|2|anti-sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|247|2|anti-sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|247|2|anti-sense MSMS UPN47_class_I_Rep_1 2 467.2625427246094 2 467.277532 932.540511 NaN NaN NaN NaN NaN NaN NaN 45.292 1 48.992 48.492 49.492 3.6999 0 0 0 0.40404 1 9499 9499 5.2307 0 1 44922 8219 28370 28383 51741 51741 0.07154275695961587 TMLPVLFL 8 Unmodified _TMLPVLFL_ 0 0 0 HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|247|2|anti-sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|247|2|anti-sense HERVIP10FH-int_dup189|chrX:139852482-139857325:+|3.285258149468008|0.0217335839588182|7.24|151.0|247|2|anti-sense MSMS UPN47_class_I_Rep_3 4 467.26263427734375 2 467.277532 932.540511 NaN NaN NaN NaN NaN NaN NaN 45.521 1 48.765 48.265 49.265 3.2441 0 0 0 0.40404 1 9653 9653 5.2307 0 1 44923 8219 28370 28383 51742 51742 0.07154275695961587 TMLQLLHVVRT 11 Unmodified _TMLQLLHVVRT_ 0 0 0 REV__L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|58|1|anti-sense REV__L1MC1_dup884|chr1:213211912-213213582:-|1.107982605396676|0.0361627052837753|4.94|151.0|58|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 437.6214904785156 3 437.591952 1309.75403 0.13447 5.8842E-05 -0.12408 -5.4298E-05 0.010384 4.5441E-06 437.59191934132934 91.207 0.041473 94.912 94.885 94.927 3.7053 8 5 2 0 0 0 22.551 1 22774 22774 0.50596 0.23694 1 43749 + 44924 26616 28371 28384 51743 51743 0.11153956404859855 TMNSFSQNS 9 Unmodified _TMNSFSQNS_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS UPN48_class_I_Rep_1 5 508.2124938964844 2 508.211106 1014.40766 NaN NaN NaN NaN NaN NaN NaN 99.933 1 103.54 103.04 104.04 3.6065 0 0 0 0.39036 1 24131 24131 2.9952 0.41776 1 + 44925 19503 28372 28385 51744 51744 -0.09896820498636316 TMPLLSSHME 10 Unmodified _TMPLLSSHME_ 0 0 0 MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|3|1|sense MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|3|1|sense MER4A1__dup337|chr15:92915724-92916340:+|1.3286086103403931|0.049683528998796|4.74|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 573.8358764648438 2 573.270109 1144.52567 0.3739 0.00021435 4.4132 0.0025299 4.7871 0.0027443 573.7753274872349 49.237 0.068478 52.866 52.839 52.907 3.6291 6 4 2 0 0 0 0.84575 1 9861 9861 3.2813 0.97858 1 24777 44926 16018 28373 28386 51745 51745 -0.04081584234336333 TMRKCHYI 8 Unmodified _TMRKCHYI_ 0 0 0 L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|2|1|sense L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|2|1|sense L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 526.2630004882812 2 526.262422 1050.51029 NaN NaN NaN NaN NaN NaN NaN 25.16 1 28.727 28.227 29.227 3.5667 0 0 0 0.40738 1 2887 2887 0.79363 0 1 44927 12261 28374 28387 51746 51746 -0.012944062408678292 TMRRANRLK 9 Unmodified _TMRRANRLK_ 0 0 0 REV__L1ME3C_dup1470|chr7:131062519-131063852:+|1.3412142805036085|0.028590728160604|5.55|150.0|35|3|sense REV__L1ME3C_dup1470|chr7:131062519-131063852:+|1.3412142805036085|0.028590728160604|5.55|150.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 573.340087890625 2 573.337841 1144.66113 NaN NaN NaN NaN NaN NaN NaN 41.641 1 45.286 44.786 45.786 3.6458 0 0 0 0.37891 1 7545 7545 5.7319 0 1 + 44928 28093 28375 28388 51747 51747 0.09458496462116273 TMVCTRKF 8 Unmodified _TMVCTRKF_ 0 0 0 ENST00000403729.6_1_4:80828287-80828350:-|nuORF ENST00000403729.6_1_4:80828287-80828350:-|nuORF ENST00000403729.6_1_4:80828287-80828350:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 493.2530822753906 2 493.251523 984.488493 0.30365 0.00014977 3.3149 0.0016351 3.6186 0.0017849 493.25313927096863 70.752 0.049614 74.271 74.25 74.3 3.5185 6 5 2 0 0 0 0.72333 1 16391 16391 2.3027 0 1 45642 44929 6605 28376 28389 51748 51748 -0.004372109894461573 TMVLFVPYY 9 Unmodified _TMVLFVPYY_ 0 0 0 REV__ENSG00000121381|ENST00000240691|TAS2R9 REV__ENSG00000121381|ENST00000240691|TAS2R9 MSMS UPN48_class_I_Rep_3 7 566.7882080078125 2 566.791004 1131.56745 NaN NaN NaN NaN NaN NaN NaN 44.373 1 48.01 47.51 48.51 3.6372 0 0 0 0.39428 1 8373 8373 2.0598 0.21551 1 + 44930 18727 28377 28390 51749 51749 0.006933395164878675 TMVLKGRH 8 Unmodified _TMVLKGRH_ 0 0 0 REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|37|2|sense REV__L1M4_dup8030|chr7:99115601-99117341:+|2.857864588029679|0.0569184977774771|5.65|151.0|37|2|sense MSMS UPN46_class_I_Rep_3 1 471.27984619140625 2 471.271104 940.527655 NaN NaN NaN NaN NaN NaN NaN 87.288 1 87.288 86.788 87.788 0 0 0 0 0.40604 1 20906 20906 2.5775 0 1 + 44931 24452 28378 28391 51750 51750 0.05501257356434053 TMVRIIPQ 8 Unmodified _TMVRIIPQ_ 0 0 0 REV__ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|1|intron REV__ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|1|intron MSMS UPN48_class_I_Rep_2 6 479.3092346191406 2 479.281137 956.547722 NaN NaN NaN NaN NaN NaN NaN 58.043 1 61.557 61.057 62.057 3.5142 0 0 0 0.40625 1 12607 12607 2.3027 0.4585 1 + 44932 20944 28379 28392 51751 51751 0.0677100829640267 TMWFLCLDY 9 Unmodified _TMWFLCLDY_ 0 0 0 L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|30|1|anti-sense L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|30|1|anti-sense L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_1 2 596.2627563476562 2 596.264296 1190.51404 NaN NaN NaN NaN NaN NaN NaN 71.087 1 74.462 73.962 74.962 3.3751 0 0 0 0.28335 1 17312 17312 11.64 1.5664 1 44933 9313 28380 28393 51752 51752 -0.0735978125769634 TMWFLCLDY 9 Unmodified _TMWFLCLDY_ 0 0 0 L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|30|1|anti-sense L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|30|1|anti-sense L1MA10_dup3126|chr10:886074-886808:+|1.3032706227914264|0.0333811744182648|5.29|151.0|30|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 596.2635498046875 2 596.264296 1190.51404 0.41824 0.00024938 -1.371 -0.00081751 -0.95281 -0.00056813 596.2632865283242 71.154 0.42207 74.444 74.272 74.695 3.2896 56 38 2 0 0 0 0.46434 1 17380 17380 4.3292 0.38484 1 93779 44934 9313 28380 28393 51753 51753 -0.0735978125769634 TMYCGDCKT 9 Unmodified _TMYCGDCKT_ 0 0 0 REV__L1MD3_dup1339|chr4:150991148-150991803:+|1.0820228552531814|0.0058605077573303|7.53|151.0|24|3|sense REV__L1MD3_dup1339|chr4:150991148-150991803:+|1.0820228552531814|0.0058605077573303|7.53|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 511.1908874511719 2 511.193013 1020.37147 NaN NaN NaN NaN NaN NaN NaN 70.064 1 70.064 69.564 70.564 0 0 0 0 0.40098 1 16083 16083 0.45834 0 1 + 44935 27467 28381 28394 51754 51754 -0.13789736991361679 TMYGSDCLVY 10 Unmodified _TMYGSDCLVY_ 0 0 0 REV__L1MC1_dup2284|chr3:40527846-40529005:-|1.768282976272611|0.2732294892154439|2.69|151.0|11|1|sense REV__L1MC1_dup2284|chr3:40527846-40529005:-|1.768282976272611|0.2732294892154439|2.69|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 576.2406005859375 2 576.241018 1150.46748 0.3899 0.00022468 -0.58532 -0.00033728 -0.19541 -0.0001126 576.2406643013809 60.943 0.72834 64.324 64.033 64.762 3.3815 124 61 3 0 0 0 0.47413 1 14241 14241 13.906 5.9959 1 341580 + 44936 26536 28382 28395 51755 51755 -0.10173265879643623 TMYGSDCLVY 10 Unmodified _TMYGSDCLVY_ 0 0 0 REV__L1MC1_dup2284|chr3:40527846-40529005:-|1.768282976272611|0.2732294892154439|2.69|151.0|11|1|sense REV__L1MC1_dup2284|chr3:40527846-40529005:-|1.768282976272611|0.2732294892154439|2.69|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 576.2406616210938 2 576.241018 1150.46748 0.46909 0.00027031 -0.74142 -0.00042724 -0.27233 -0.00015693 576.2406772394899 61.185 0.64725 64.45 64.17 64.817 3.2654 99 48 3 0 0 0 0.46161 1 14350 14350 14.838 6.9281 1 286670 + 44937 26536 28382 28395 51756 51756 -0.10173265879643623 TMYGSDCLVY 10 Unmodified _TMYGSDCLVY_ 0 0 0 REV__L1MC1_dup2284|chr3:40527846-40529005:-|1.768282976272611|0.2732294892154439|2.69|151.0|11|1|sense REV__L1MC1_dup2284|chr3:40527846-40529005:-|1.768282976272611|0.2732294892154439|2.69|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 576.2408447265625 2 576.241018 1150.46748 0.38488 0.00022178 -0.35098 -0.00020225 0.0339 1.9535E-05 576.2407938042489 61.192 0.68416 64.357 64.11 64.794 3.1651 116 56 3 0 0 0 0.46161 1 14470 14470 14.838 6.9281 1 263150 + 44938 26536 28382 28395 51757 51757 -0.10173265879643623 TMYQYWLI 8 Unmodified _TMYQYWLI_ 0 0 0 L1MC3_dup997|chr2:44196073-44196769:-|1.2565796855109037|0.0102017411462557|6.94|151.0|30|3|sense L1MC3_dup997|chr2:44196073-44196769:-|1.2565796855109037|0.0102017411462557|6.94|151.0|30|3|sense L1MC3_dup997|chr2:44196073-44196769:-|1.2565796855109037|0.0102017411462557|6.94|151.0|30|3|sense MSMS UPN48_class_I_Rep_3 7 559.3057861328125 2 559.272978 1116.5314 NaN NaN NaN NaN NaN NaN NaN 71.631 1 75.157 74.657 75.657 3.5266 0 0 0 0.40625 1 16648 16648 2.3027 0.4585 1 44939 11390 28383 28396 51758 51758 -0.0222011766036303 TNAEKFCHH 9 Unmodified _TNAEKFCHH_ 0 0 0 L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|131|3|sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|131|3|sense L1PA4_dup9503|chr12:46848915-46854701:+|1.2332672067202493|0.0387499597249395|4.99|151.0|131|3|sense MSMS UPN47_class_I_Rep_1 2 543.743408203125 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 111.32 1 114.89 114.39 115.39 3.572 0 0 0 0.38478 1 27456 27456 4.3292 0 1 44940 14406 28384 28397 51759 51759 -0.06805415270878257 TNARPRRR 8 Unmodified _TNARPRRR_ 0 0 0 REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 513.8060302734375 2 513.805023 1025.59549 0.33233 0.00017075 0.23968 0.00012315 0.572 0.0002939 513.8051824850393 88.061 0.34778 91.789 91.583 91.931 3.7279 75 42 2 0 0 0 0.82752 1 20913 20913 0.79363 0 1 461570 + 44941 23015 28385 28398 51760 51760 0.08371843331474338 TNARPRRR 8 Unmodified _TNARPRRR_ 0 0 0 REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 513.8051147460938 2 513.805023 1025.59549 0.33827 0.00017381 0.42952 0.00022069 0.76779 0.00039449 513.8052872664755 88.061 0.39581 91.871 91.598 91.994 3.8104 56 47 2 0 0 0 0.82752 2 20843 20843;20901 0.79363 0 1 284200 + 44942 23015 28385 28398 51761;51762 51761 0.08371843331474338 TNCNCCETCCC 11 Unmodified _TNCNCCETCCC_ 0 0 0 REV__Tigger3a_dup3517|chr10:97378221-97378531:-|2.360760445108436|0.0301558784848098|6.29|151.0|22|2|anti-sense REV__Tigger3a_dup3517|chr10:97378221-97378531:-|2.360760445108436|0.0301558784848098|6.29|151.0|22|2|anti-sense MSMS UPN47_class_I_Rep_2 3 598.649658203125 2 598.652015 1195.28948 NaN NaN NaN NaN NaN NaN NaN 116.05 1 119.55 119.05 120.05 3.4965 0 0 0 0.38417 1 28319 28319 0 0 1 + 44943 32716 28386 28399 51763 51763 -0.30035666728645083 TNDEVVSHP 9 Unmodified _TNDEVVSHP_ 0 0 0 nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6 nc|ENSG00000173826|Q9H252-3|KCNH6 nc|ENSG00000173826|Q9H252-3|KCNH6 MULTI-MSMS UPN47_class_I_Rep_1 2 499.2326965332031 2 499.232896 996.451239 -0.2604 -0.00013 0.33749 0.00016848 0.077084 3.8483E-05 499.232971444828 32.748 0.8866 36.461 36.097 36.984 3.7131 153 71 3 0 0 0 0.48846 1 5586 5586 1.8442 0 1 358460 44944 4651 28387 28400 51764 51764 -0.047128877298519 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS UPN47_class_I_Rep_2 3 490.22760009765625 2 490.227613 978.440674 -0.11143 -5.4628E-05 0.36533 0.00017909 0.25389 0.00012447 490.22772527058135 32.932 0.89948 36.387 36.126 37.026 3.4547 127 70 2 0 0 0 0.82752 1 5780 5780 19.257 0 1 350420 + 44945 19552 28388 28401 51765 51765 -0.04940870384291429 TNDRYDVP 8 Unmodified _TNDRYDVP_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3 MULTI-MSMS UPN47_class_I_Rep_3 4 490.2276306152344 2 490.227613 978.440674 -0.38716 -0.00018979 0.47715 0.00023391 0.089999 4.412E-05 490.22778236272677 33.111 0.98649 36.398 36.125 37.112 3.2867 138 75 2 0 0 0 0.82752 2 5960 5878;5960 19.257 0 1 364180 + 44946 19552 28388 28401 51766;51767 51767 -0.04940870384291429 TNDSAVYY 8 Unmodified _TNDSAVYY_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MSMS UPN46_class_I_Rep_3 1 466.7000732421875 2 466.70344 931.392327 0.23159 0.00010808 -2.5683 -0.0011986 -2.3367 -0.0010906 466.6999161865366 100.61 0.059303 100.61 100.59 100.65 0 9 4 4 0 0 0 0.82752 1 24535 24535 0.79363 0 1 395170 + 44947 19525 28389 28402 51768 51768 -0.07611364024194245 TNDSFIRL 8 Unmodified _TNDSFIRL_ 0 0 0 WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 483.2386169433594 2 483.256174 964.497795 -0.30139 -0.00014565 -0.83126 -0.00040171 -1.1327 -0.00054736 483.25562410965296 33.433 0.58215 37.131 36.878 37.46 3.6983 64 38 2 0 0 0 0.82752 1 5908 5908 21.747 0 1 88115 44948 33468 28390 28403 51769 51769 0.01412596892100737 TNDSFIRL 8 Unmodified _TNDSFIRL_ 0 0 0 WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_2 3 483.2388000488281 2 483.256174 964.497795 -0.18942 -9.1536E-05 -1.1012 -0.00053216 -1.2906 -0.00062369 483.25546578029366 33.692 0.62725 37.132 36.865 37.493 3.4398 63 37 2 0 0 0 0.82752 1 6013 6013 28.487 0 1 66926 44949 33468 28390 28403 51770 51770 0.01412596892100737 TNDSFIRL 8 Unmodified _TNDSFIRL_ 0 0 0 WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant WDR82|p.G215D|1|0.1|ENSG00000164091|chr3:52259772-52259772|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_3 4 483.2384033203125 2 483.256174 964.497795 -0.45166 -0.00021827 -0.84184 -0.00040683 -1.2935 -0.00062509 483.2555406944637 33.921 0.57241 37.195 36.932 37.504 3.2748 67 39 2 0 0 0 0.82752 1 6067 6067 36.044 0 1 85963 44950 33468 28390 28403 51771 51771 0.01412596892100737 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.2376708984375 2 483.237981 964.461409 -0.30372 -0.00014677 0.2052 9.9162E-05 -0.098521 -4.7609E-05 483.2382314540873 32.736 2.5396 36.449 35.98 38.52 3.7131 473 191 4 0 0 0 0.82752 9 6059 5560;5826;5867;5946;6059;6097;6110;6136;6171 110.67 0 1 7572400 + 44951 30121 28391 28404 51772;51773;51774;51775;51776;51777;51778;51779;51780 51776 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MSMS UPN47_class_I_Rep_1 2 483.2374572753906 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 34.824 1 38.51 38.01 39.01 3.6859 0 0 0 0.40331 1 6315 6315 6.2058 0 1 + 44952 30121 28391 28404 51781 51781 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MSMS UPN47_class_I_Rep_1 2 483.2371520996094 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 34.959 1 38.645 38.145 39.145 3.6859 0 0 0 0.40074 1 6355 6355 7.609 0 1 + 44953 30121 28391 28404 51782 51782 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 483.2374572753906 2 483.237981 964.461409 -0.1882 -9.0947E-05 0.095001 4.5908E-05 -0.093201 -4.5038E-05 483.2381676384087 32.941 2.4883 36.396 35.965 38.453 3.4547 451 179 4 0 0 0 0.82752 6 6199 5667;5978;6144;6199;6244;6294 103.35 0 1 7746000 + 44954 30121 28391 28404 51783;51784;51785;51786;51787;51788 51786 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MSMS UPN47_class_I_Rep_2 3 483.2375793457031 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 35.14 1 38.565 38.065 39.065 3.4253 0 0 0 0.39068 1 6441 6441 11.495 0 1 + 44955 30121 28391 28404 51789 51789 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MSMS UPN47_class_I_Rep_2 3 483.2371520996094 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 35.89 1 39.301 38.801 39.801 3.4114 0 0 0 0.40501 1 6670 6670 3.9444 0 1 + 44956 30121 28391 28404 51790 51790 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 483.2366638183594 2 483.237981 964.461409 -0.46144 -0.00022299 0.2932 0.00014169 -0.16824 -8.1301E-05 483.2382941966884 33.121 2.7014 36.408 35.96 38.661 3.2867 509 205 4 0 0 0 0.82752 9 6327 5761;6029;6211;6252;6296;6327;6340;6409;6495 122.18 0 1 6851300 + 44957 30121 28391 28404 51791;51792;51793;51794;51795;51796;51797;51798;51799 51796 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MSMS UPN47_class_I_Rep_3 4 483.2373046875 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 35.435 1 38.69 38.19 39.19 3.2547 0 0 0 0.38667 1 6563 6563 13.042 0 1 + 44958 30121 28391 28404 51800 51800 -0.022242800046228695 TNDSPLRY 8 Unmodified _TNDSPLRY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|38|1|sense MSMS UPN47_class_I_Rep_3 4 483.2377624511719 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 36.318 1 39.573 39.073 40.073 3.2547 0 0 0 0.4044 1 6833 6833 4.756 0 1 + 44959 30121 28391 28404 51801 51801 -0.022242800046228695 TNEFIPCEFF 10 Unmodified _TNEFIPCEFF_ 0 0 0 Charlie15b_dup1192|chr10:96534648-96535564:+|1.0315127346745627|0.040908411126136|4.66|151.0|62|3|anti-sense Charlie15b_dup1192|chr10:96534648-96535564:+|1.0315127346745627|0.040908411126136|4.66|151.0|62|3|anti-sense Charlie15b_dup1192|chr10:96534648-96535564:+|1.0315127346745627|0.040908411126136|4.66|151.0|62|3|anti-sense MSMS UPN47_class_I_Rep_2 3 623.7744750976562 2 623.776082 1245.53761 NaN NaN NaN NaN NaN NaN NaN 46.389 1 49.74 49.24 50.24 3.3515 0 0 0 0.53105 1 9863 9863 3.5965 1.5367 1 44960 447 28392 28405 51802 51802 -0.07533644219529378 TNEHTEIHF 9 Unmodified _TNEHTEIHF_ 0 0 0 REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L MSMS UPN47_class_I_Rep_2 3 563.775390625 2 564.259445 1126.50434 NaN NaN NaN NaN NaN NaN NaN 46.434 1 49.785 49.285 50.285 3.3515 0 0 0 0.39518 1 9877 9877 1.8442 0.19162 1 + 44961 18723 28393 28406 51803 51803 -0.05385509947200262 TNENEPIY 8 Unmodified _TNENEPIY_ 0 0 0 REV__Kanga1b_dup228|chr10:21969244-21969744:+|1.05412567519553|0.0025483675619431|8.69|151.0|24|1|anti-sense REV__Kanga1b_dup228|chr10:21969244-21969744:+|1.05412567519553|0.0025483675619431|8.69|151.0|24|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.2218933105469 2 490.221997 978.429441 -0.10963 -5.3742E-05 0.00062682 3.0728E-07 -0.109 -5.3435E-05 490.22170219112587 32.527 0.4763 35.982 35.737 36.213 3.4547 48 32 3 0 0 0 0.82752 1 5711 5711 10.824 0 1 120340 + 44962 23993 28394 28407 51804 51804 -0.060636924784148505 TNFFIWMY 8 Unmodified _TNFFIWMY_ 0 0 0 REV__Tigger2b_Pri_dup1857|chr17:399702-399895:-|1.6437683941445451|0.0149785120554482|6.78|148.0|5|2|sense REV__Tigger2b_Pri_dup1857|chr17:399702-399895:-|1.6437683941445451|0.0149785120554482|6.78|148.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 561.2603149414062 2 561.259871 1120.50519 NaN NaN NaN NaN NaN NaN NaN 71.564 1 74.94 74.44 75.44 3.3751 0 0 0 0.40625 1 17457 17457 2.3027 0 1 + 44963 32699 28395 28408 51805 51805 -0.05024386831837546 TNFLSWILL 9 Unmodified _TNFLSWILL_ 0 0 0 L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|106|3|anti-sense L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|106|3|anti-sense L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|106|3|anti-sense MSMS UPN48_class_I_Rep_1 5 553.8134155273438 2 553.815867 1105.61718 NaN NaN NaN NaN NaN NaN NaN 60.137 1 63.611 63.111 64.111 3.4737 0 0 0 0.28335 1 13275 13275 11.64 0 1 44964 11356 28396 28409 51806 51806 0.06859790516796238 TNFSTKAMW 9 Unmodified _TNFSTKAMW_ 0 0 0 ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 542.7545166015625 2 543.257859 1084.50117 -0.02218 -1.2049E-05 1.711 0.00092952 1.6888 0.00091748 543.7591719798357 31.293 0.051125 35.022 34.99 35.041 3.7293 5 3 2 0 0 0 0.12354 1 5224 5224 3.5965 1.019 1 20845 44965 6164 28397 28410 51807 51807 -0.03770476325553318 TNFSTKAMW 9 Unmodified _TNFSTKAMW_ 0 0 0 ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 543.257859 1084.50117 -0.18095 -9.8301E-05 6.9502 0.0037757 6.7692 0.0036774 543.7652732726457 31.338 0.041983 34.638 34.612 34.654 3.2991 -0.19245 0.0045174 NaN 3.5965 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 29151 44966 6164 28397 28410 -0.03770476325553318 TNFYPRCW 8 Unmodified _TNFYPRCW_ 0 0 0 Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|150|3|anti-sense Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|150|3|anti-sense Ricksha_c_dup362|chr5:40779204-40781286:-|1.9299195928174857|0.2012125102765757|3.26|151.0|150|3|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7428588867188 2 543.744919 1085.47529 NaN NaN NaN NaN NaN NaN NaN 22.335 1 26.01 25.51 26.51 3.6749 0 0 0 0.40604 1 2582 2582 2.5775 0 1 44967 32835 28398 28411 51808 51808 -0.06403325777182545 TNGGPLIK 8 Unmodified _TNGGPLIK_ 0 0 0 REV__ENSG00000075568|ENST00000186436|TMEM131 REV__ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS UPN48_class_I_Rep_3 7 400.2378234863281 2 400.237253 798.459953 0.096572 3.8652E-05 1.4908 0.00059665 1.5873 0.00063531 400.2378375322664 109.09 0.11136 112.76 112.73 112.84 3.6751 22 14 2 0 0 0 0.82752 1 25900 25900 0.6015 0 1 1383700 + 44968 17857 28399 28412 51809 51809 0.05266130697293647 TNGGPLIK 8 Unmodified _TNGGPLIK_ 0 0 0 REV__ENSG00000075568|ENST00000186436|TMEM131 REV__ENSG00000075568|ENST00000186436|TMEM131 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 400.237253 798.459953 0.094676 3.7893E-05 1.3578 0.00054344 1.4525 0.00058133 400.2377464460944 109.14 0.28038 112.74 112.61 112.89 3.6046 -0.010723 -3.7833E-05 NaN 0.6015 40 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1015900 + 44969 17857 28399 28412 0.05266130697293647 TNGRTFHPHG 10 Unmodified _TNGRTFHPHG_ 0 0 0 L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|80|3|sense;L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|12|1|sense;L1PA3_dup1600|chr3:11484550-11486823:-|2.7416055621894864|0.0506001002581998|5.76|151.0|8|1|sense L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|80|3|sense L1PA8_dup2023|chr4:88637448-88640746:+|4.802358056545836|0.055452728744875|6.44|151.0|80|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.772705078125 2 562.273221 1122.53189 -0.15213 -8.5539E-05 -2.4462 -0.0013755 -2.5984 -0.001461 562.7725946865436 14.79 0.29795 14.79 14.648 14.946 0 48 35 2 0 0 0 0.56281 1 739 739 1.8442 0.36234 1 29698 44970 14231 28400 28413 51810 51810 -0.024475618963151646 TNIIIVAGI 9 Unmodified _TNIIIVAGI_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MSMS UPN46_class_I_Rep_3 1 457.28961181640625 2 457.289485 912.564418 NaN NaN NaN NaN NaN NaN NaN 94.461 1 94.461 93.961 94.961 0 0 0 0 0.2408 1 22914 22914 13.906 0 1 + 44971 17852 28401 28414 51811 51811 0.10463832454001931 TNIIRKYF 8 Unmodified _TNIIRKYF_ 0 0 0 L1PA10_dup1308|chr3:127703604-127705402:+|1.448845031876295|0.1521042932410829|3.25|151.0|97|2|anti-sense L1PA10_dup1308|chr3:127703604-127705402:+|1.448845031876295|0.1521042932410829|3.25|151.0|97|2|anti-sense L1PA10_dup1308|chr3:127703604-127705402:+|1.448845031876295|0.1521042932410829|3.25|151.0|97|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 527.3049926757812 2 527.805834 1053.59712 0.33366 0.00017611 0.68191 0.00035992 1.0156 0.00053602 527.8063902170622 93.785 0.079811 93.785 93.747 93.827 0 10 6 2 0 0 0 0.72333 1 22735 22735 2.5775 0 1 336670 44972 13580 28402 28415 51812 51812 0.07246039576853036 TNKCCMCSDC 10 Unmodified _TNKCCMCSDC_ 0 0 0 Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 554.1758422851562 2 554.17344 1106.33233 NaN NaN NaN NaN NaN NaN NaN 18.365 1 21.953 21.453 22.453 3.5874 0 0 0 0.53105 1 1201 1201 0.40072 0.40072 1 44973 33054 28403 28416 51813 51813 -0.21658528608872984 TNKCCMCSDC 10 Unmodified _TNKCCMCSDC_ 0 0 0 Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 554.1758422851562 2 554.17344 1106.33233 NaN NaN NaN NaN NaN NaN NaN 25.503 1 29.272 28.772 29.772 3.769 0 0 0 0.53105 1 3110 3110 0.40072 0.40072 1 44974 33054 28403 28416 51814 51814 -0.21658528608872984 TNKKKGHP 8 Unmodified _TNKKKGHP_ 0 0 0 L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|8|1|sense L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|8|1|sense L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 455.7492980957031 2 455.266876 908.519199 NaN NaN NaN NaN NaN NaN NaN 21.987 1 25.633 25.133 26.133 3.6459 0 0 0 0.40738 1 2172 2172 0.79363 0 1 44975 14302 28404 28417 51815 51815 0.06128026711473922 TNKKKKKLL 9 Unmodified _TNKKKKKLL_ 0 0 0 REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 551.3812255859375 2 550.879333 1099.74411 0.53492 0.00029468 0.082051 4.52E-05 0.61697 0.00033988 550.8792623071242 108.68 0.22982 112.32 112.26 112.49 3.6355 24 19 2 0 0 0 0.48846 1 26721 26721 1.8442 0 1 3340600 + 44976 17194 28405 28418 51816 51816 0.19823136461809554 TNKKKKKLL 9 Unmodified _TNKKKKKLL_ 0 0 0 REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 551.3128662109375 2 550.879333 1099.74411 0.53492 0.00029468 0.082051 4.52E-05 0.61697 0.00033988 550.8792623071242 108.68 0.22982 112.32 112.26 112.49 3.6355 24 19 2 0 0 0 0.12527 1 26732 26732 0.6015 0.6015 1 3340600 + 44977 17194 28405 28418 51817 51817 0.19823136461809554 TNKKKKKLL 9 Unmodified _TNKKKKKLL_ 0 0 0 REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.8792724609375 2 550.879333 1099.74411 0.49135 0.00027067 0.018695 1.0299E-05 0.51004 0.00028097 550.8791530657741 108.02 0.11688 111.69 111.59 111.71 3.6746 35 10 4 0 0 0 0.48846 1 25562 25562 1.8442 0 1 13719000 + 44978 17194 28405 28418 51818 51818 0.19823136461809554 TNKKKKKLL 9 Unmodified _TNKKKKKLL_ 0 0 0 REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 550.879333 1099.74411 0.62236 0.00034284 0.50014 0.00027552 1.1225 0.00061836 550.8794662385502 108.42 0.17969 111.96 111.91 112.09 3.5333 -0.23024 9.0538E-05 NaN 1.8442 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7381900 + 44979 17194 28405 28418 0.19823136461809554 TNKKKKKLL 9 Unmodified _TNKKKKKLL_ 0 0 0 REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense REV__AluSx3_dup29101|chr19:7409758-7410087:-|1.1132494135118527|0.0070135698320662|7.31|151.0|11|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 550.879333 1099.74411 0.49845 0.00027459 -0.07716 -4.2506E-05 0.42129 0.00023208 550.8791130150712 108.66 0.1472 112.2 112.16 112.31 3.5382 0.011401 -0.00054551 NaN 1.8442 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 6420000 + 44980 17194 28405 28418 0.19823136461809554 TNKKKSRPRWI 11 Unmodified _TNKKKSRPRWI_ 0 0 0 L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|162|3|sense L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|162|3|sense L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|162|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 471.7955627441406 3 471.95276 1412.83645 0.056824 2.6818E-05 -1.407 -0.00066406 -1.3502 -0.00063724 472.286595230675 99.166 0.091179 102.6 102.53 102.62 3.4328 17 13 2 0 0 0 22.551 1 24521 24521 4.7159 2.0847 1 72198 44981 14717 28406 28419 51819 51819 0.1465461452803538 TNKQTKKFQK 10 Unmodified _TNKQTKKFQK_ 0 0 0 L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|8|1|sense L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|8|1|sense L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 625.8663330078125 2 625.864412 1249.71427 NaN NaN NaN NaN NaN NaN NaN 108.68 1 112.32 111.82 112.82 3.6355 0 0 0 0.53105 1 26727 26727 8.1555 2.4237 1 44982 9839 28407 28420 51820 51820 0.0994015272578963 TNKRRKERRI 10 Unmodified _TNKRRKERRI_ 0 0 0 L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|156|3|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|156|3|sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|156|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.9481201171875 3 452.948009 1355.8222 0.19282 8.7337E-05 0.27205 0.00012323 0.46487 0.00021056 452.948038597188 105.59 0.2243 105.59 105.5 105.72 0 38 29 2 0 0 0 0.56107 1 25762 25762 3.0723 1.33 1 1908500 44983 14461 28408 28421 51821 51821 0.15851962099736738 TNKYVLWY 8 Unmodified _TNKYVLWY_ 0 0 0 REV__MER41-int_dup1257|chr12:50769522-50770999:+|1.251563429299333|0.1774854178916277|2.82|151.0|93|3|anti-sense REV__MER41-int_dup1257|chr12:50769522-50770999:+|1.251563429299333|0.1774854178916277|2.82|151.0|93|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 543.2723999023438 2 543.784567 1085.55458 0.013833 7.522E-06 0.28351 0.00015417 0.29735 0.00016169 543.7845525691666 14.503 0.045601 17.89 17.854 17.899 3.3871 7 5 2 0 0 0 0.72333 1 578 578 0.79363 0 1 11252 + 44984 31288 28409 28422 51822 51822 0.015226444486188484 TNLDDDVPIL 10 Unmodified _TNLDDDVPIL_ 0 0 0 ENSG00000147316|ENST00000344683|MCPH1;nc|ENSG00000147316|Q8NEM0-3|MCPH1 ENSG00000147316|ENST00000344683|MCPH1 ENSG00000147316|ENST00000344683|MCPH1 MSMS UPN46_class_I_Rep_3 1 557.7847900390625 2 557.784961 1113.55537 NaN NaN NaN NaN NaN NaN NaN 88.908 1 88.908 88.408 89.408 0 0 0 0 0.53105 1 21372 21372 1.6526 0 1 44985 3472 28410 28423 51823 51823 0.003133943070224632 TNLHKLAVN 9 Unmodified _TNLHKLAVN_ 0 0 0 ENST00000450755.1_1_X:122696050-122696458:+|nuORF ENST00000450755.1_1_X:122696050-122696458:+|nuORF ENST00000450755.1_1_X:122696050-122696458:+|nuORF MSMS UPN46_class_I_Rep_3 1 505.2919921875 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 91.873 1 91.873 91.373 92.373 0 0 0 0 0.39428 1 22211 22211 2.0598 0.21551 1 44986 6810 28411 28424 51824 51824 0.06768565054403552 TNLHKLAVN 9 Unmodified _TNLHKLAVN_ 0 0 0 ENST00000450755.1_1_X:122696050-122696458:+|nuORF ENST00000450755.1_1_X:122696050-122696458:+|nuORF ENST00000450755.1_1_X:122696050-122696458:+|nuORF MSMS UPN46_class_I_Rep_3 1 505.2920837402344 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 92.024 1 92.024 91.524 92.524 0 0 0 0 0.39428 1 22254 22254 2.0598 0 1 44987 6810 28411 28424 51825 51825 0.06768565054403552 TNLHKRRRNKI 11 Unmodified _TNLHKRRRNKI_ 0 0 0 L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense;L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|108|3|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense MSMS UPN47_class_I_Rep_3 4 479.2959289550781 3 479.295409 1434.8644 NaN NaN NaN NaN NaN NaN NaN 17.186 1 20.545 20.045 21.045 3.3581 0 0 0 0.38417 1 1214 1214 0.094841 0 1 44988 14249 28412 28425 51826 51826 0.16435937508117604 TNLHKRRRNKI 11 Unmodified _TNLHKRRRNKI_ 0 0 0 L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense;L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|108|3|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|44|2|sense MSMS UPN47_class_I_Rep_3 4 479.2952880859375 3 479.295409 1434.8644 NaN NaN NaN NaN NaN NaN NaN 17.577 1 20.935 20.435 21.435 3.3581 0 0 0 0.38417 1 1310 1310 0.094841 0 1 44989 14249 28412 28425 51827 51827 0.16435937508117604 TNLLNITCM 9 Unmodified _TNLLNITCM_ 0 0 0 REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|76|3|sense REV__L1MEf_dup498|chr1:173449680-173451719:+|1.024564739284633|0.0614979574984854|4.06|151.0|76|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 511.2694091796875 2 511.754095 1021.49364 0.35828 0.00018335 0.16388 8.3864E-05 0.52215 0.00026721 511.75428447992823 64.416 0.20268 67.89 67.79 67.992 3.4743 17 15 2 0 0 0 0.11884 1 14561 14561 9.3831 0 1 77367 + 44990 28652 28413 28426 51828 51828 -0.016249519174948546 TNLRKNNRQP 10 Unmodified _TNLRKNNRQP_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 620.8466186523438 2 620.847084 1239.67962 -0.080043 -4.9695E-05 -0.49467 -0.00030711 -0.57471 -0.00035681 620.8467096978209 13.011 0.20484 16.468 16.404 16.609 3.457 37 17 3 0 0 0 0.53794 1 216 216 7.1017 1.8048 1 116200 44991 4682 28414 28427 51829 51829 0.06936329637687777 TNLRKNNRQP 10 Unmodified _TNLRKNNRQP_ 0 0 0 ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENST00000566039.5_1_15:66793707-66797161:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 620.8468017578125 2 620.847084 1239.67962 0.048314 2.9996E-05 -0.43889 -0.00027248 -0.39058 -0.00024249 620.8466979100602 13.063 0.21582 16.451 16.367 16.583 3.388 34 18 3 0 0 0 0.56118 1 222 222 2.9952 0 1 80798 44992 4682 28414 28427 51830 51830 0.06936329637687777 TNMTQKNAI 9 Unmodified _TNMTQKNAI_ 0 0 0 REV__L1ME1_dup15889|chr9:123731260-123732677:+|1.1296079042649496|0.0088279840309716|7.0|151.0|33|2|sense REV__L1ME1_dup15889|chr9:123731260-123732677:+|1.1296079042649496|0.0088279840309716|7.0|151.0|33|2|sense MSMS UPN48_class_I_Rep_3 7 510.75921630859375 2 510.760766 1019.50698 NaN NaN NaN NaN NaN NaN NaN 51.158 1 54.768 54.268 55.268 3.6105 0 0 0 0.38916 1 10455 10455 3.2813 0.28607 1 + 44993 27623 28415 28428 51831 51831 -0.0019937781389671727 TNNHDLKKL 9 Unmodified _TNNHDLKKL_ 0 0 0 L1ME2z_dup5538|chr15:59007066-59008214:-|1.2992533869499656|0.012986796660484|6.64|150.0|58|2|anti-sense L1ME2z_dup5538|chr15:59007066-59008214:-|1.2992533869499656|0.012986796660484|6.64|150.0|58|2|anti-sense L1ME2z_dup5538|chr15:59007066-59008214:-|1.2992533869499656|0.012986796660484|6.64|150.0|58|2|anti-sense MSMS UPN46_class_I_Rep_3 1 542.0342407226562 2 541.80128 1081.58801 NaN NaN NaN NaN NaN NaN NaN 45.685 1 45.685 45.185 46.185 0 0 0 0 0.39518 1 9311 9311 1.8442 0 1 44994 12572 28416 28429 51832 51832 0.050476462205324424 TNNLAYLKL 9 Unmodified _TNNLAYLKL_ 0 0 0 REV__L1MB3_dup14828|chr17:36572706-36573111:-|1.4192594954628568|0.0524186509191636|4.76|151.0|22|1|anti-sense REV__L1MB3_dup14828|chr17:36572706-36573111:-|1.4192594954628568|0.0524186509191636|4.76|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_1 5 525.3023681640625 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 40.047 1 43.551 43.051 44.051 3.5048 0 0 0 0.3967 1 7141 7141 1.4819 0 1 + 44995 25826 28417 28430 51833 51833 0.06934315994362805 TNNPNFRYG 9 Unmodified _TNNPNFRYG_ 0 0 0 REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|24|1|sense REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|24|1|sense MSMS UPN47_class_I_Rep_1 2 541.7539672851562 2 541.75433 1081.49411 NaN NaN NaN NaN NaN NaN NaN 31.463 1 35.192 34.692 35.692 3.7293 0 0 0 0.38784 1 5282 5282 3.5965 0.8613 1 + 44996 25029 28418 28431 51834 51834 -0.04338072881773769 TNNRNERED 9 Unmodified _TNNRNERED_ 0 0 0 L1MC_dup450|chr1:211805067-211805257:+|1.0071409734032246|0.0184403116744355|5.77|151.0|6|2|sense L1MC_dup450|chr1:211805067-211805257:+|1.0071409734032246|0.0184403116744355|5.77|151.0|6|2|sense L1MC_dup450|chr1:211805067-211805257:+|1.0071409734032246|0.0184403116744355|5.77|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 574.2962036132812 2 574.257965 1146.50138 0.51921 0.00029816 -0.19722 -0.00011326 0.32199 0.00018491 574.2578361504044 57.484 0.88721 60.775 60.456 61.343 3.2912 193 73 4 0 0 0 0.48846 1 13144 13144 1.8442 1.8442 1 736810 44997 11062 28419 28432 51835 51835 -0.0660138507200827 TNPPATIQTDG 11 Unmodified _TNPPATIQTDG_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MSMS UPN47_class_I_Rep_2 3 557.7728271484375 2 557.772385 1113.53022 0.46006 0.00025661 -0.10586 -5.9046E-05 0.3542 0.00019756 557.7721913811048 61.457 0.80403 64.716 64.479 65.283 3.2594 101 51 3 0 0 0 0.64617 1 14393 14393 3.5871 0.59182 1 380010 44998 5779 28420 28433 51836 51836 -0.02200660495577722 TNPPPAKPFY 10 Unmodified _TNPPPAKPFY_ 0 0 0 REV__MLT1A0_dup20258|chr21:34924722-34925081:-|1.6740838762624883|0.0015378345059319|10.09|151.0|18|1|anti-sense REV__MLT1A0_dup20258|chr21:34924722-34925081:-|1.6740838762624883|0.0015378345059319|10.09|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 566.294189453125 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 69.972 1 73.431 72.931 73.931 3.4598 0 0 0 0.53105 1 16271 16271 5.2969 0.96765 1 + 44999 31593 28421 28434 51837 51837 0.015980294773271453 TNQKVNYTL 9 Unmodified _TNQKVNYTL_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|36|1|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|36|1|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|36|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 540.7877807617188 2 540.787838 1079.56112 0.39791 0.00021518 -0.64506 -0.00034884 -0.24715 -0.00013366 540.787834330351 57.24 0.27706 60.697 60.591 60.868 3.4572 42 26 2 0 0 0 0.44742 1 13119 13119 5.2969 0 1 49930 45000 9296 28422 28435 51838 51838 0.024525376093379236 TNQKVNYTL 9 Unmodified _TNQKVNYTL_ 0 0 0 L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|36|1|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|36|1|sense L1MA1_dup2764|chrX:115931094-115936482:-|3.909028569381232|0.2242833538996142|4.12|139.0|36|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.7876586914062 2 540.787838 1079.56112 0.4756 0.0002572 -0.79762 -0.00043134 -0.32202 -0.00017414 540.7876505404142 57.468 0.35586 60.76 60.634 60.99 3.2912 51 31 2 0 0 0 0.47763 1 13238 13238 2.9952 0 1 102040 45001 9296 28422 28435 51839 51839 0.024525376093379236 TNQLVFYKL 9 Unmodified _TNQLVFYKL_ 0 0 0 REV__L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|10|1|sense REV__L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 563.3176879882812 2 563.318774 1124.623 NaN NaN NaN NaN NaN NaN NaN 56.519 1 60.02 59.52 60.52 3.5014 0 0 0 0.37476 1 12169 12169 6.7232 0.51738 1 + 45002 26162 28423 28436 51840 51840 0.06566889028476908 TNQLVFYKL 9 Unmodified _TNQLVFYKL_ 0 0 0 REV__L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|10|1|sense REV__L1MB7_dup16752|chr13:49770480-49771460:-|1.0686978610245483|0.0063031728559681|7.41|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 563.3180541992188 2 563.318774 1124.623 NaN NaN NaN NaN NaN NaN NaN 56.69 1 60.192 59.692 60.692 3.5014 0 0 0 0.39598 1 12220 12220 1.6526 0 1 + 45003 26162 28423 28436 51841 51841 0.06566889028476908 TNQQDNLF 8 Unmodified _TNQQDNLF_ 0 0 0 REV__L1PA7_dup2105|chr3:41925103-41931485:+|2.30110681533294|0.0613401516639413|5.23|151.0|136|3|sense REV__L1PA7_dup2105|chr3:41925103-41931485:+|2.30110681533294|0.0613401516639413|5.23|151.0|136|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.22735595703125 2 490.227613 978.440674 -0.28878 -0.00014157 0.6464 0.00031688 0.35762 0.00017531 490.2278349629175 32.763 0.76808 36.476 36.173 36.941 3.7131 125 62 3 0 0 0 0.82752 1 5772 5772 3.5965 0 1 307480 + 45004 30038 28424 28437 51842 51842 -0.049408703842800605 TNRAEKYVC 9 Unmodified _TNRAEKYVC_ 0 0 0 REV__ENST00000251849.8_1_3:12625127-12625511:-|nuORF REV__ENST00000251849.8_1_3:12625127-12625511:-|nuORF MSMS UPN47_class_I_Rep_1 2 542.2633056640625 2 542.266216 1082.51788 NaN NaN NaN NaN NaN NaN NaN 28.39 1 32.156 31.656 32.656 3.7662 0 0 0 0.38784 1 4366 4366 3.5965 0.31518 1 + 45005 21521 28425 28438 51843 51843 -0.02007975439596521 TNRCQKMC 8 Unmodified _TNRCQKMC_ 0 0 0 ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R MULTI-MSMS UPN46_class_I_Rep_3 1 492.2145080566406 2 492.214614 982.414676 0.036311 1.7873E-05 -0.087495 -4.3066E-05 -0.051184 -2.5193E-05 492.2144540649472 29.894 0.31103 29.894 29.663 29.974 0 31 25 2 0 0 0 0.82752 1 4799 4799 2.0598 0 1 54187 45006 3175 28426 28439 51844 51844 -0.07723502423414175 TNRKEERKRYI 11 Unmodified _TNRKEERKRYI_ 0 0 0 REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 497.784912109375 3 498.282946 1491.82701 -0.41372 -0.00020615 0.018982 9.4585E-06 -0.39473 -0.00019669 498.2828870822354 29.294 0.93971 32.617 32.23 33.17 3.3235 163 80 3 0 0 0 22.551 1 4836 4836 0.50596 0 1 134350 + 45007 22203 28427 28440 51845 51845 0.1007680145185077 TNRKKDKH 8 Unmodified _TNRKKDKH_ 0 0 0 REV__L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|181|3|sense REV__L1PA5_dup5383|chr7:149573820-149579948:-|5.997452132397855|0.2901420816076873|4.37|151.0|181|3|sense MSMS UPN48_class_I_Rep_1 5 513.7916870117188 2 513.793789 1025.57303 NaN NaN NaN NaN NaN NaN NaN 30.847 1 34.389 33.889 34.889 3.542 0 0 0 0.40625 1 4486 4486 2.3027 0 1 + 45008 29780 28428 28441 51846 51846 0.061261991431820206 TNRRAVLL 8 Unmodified _TNRRAVLL_ 0 0 0 L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|372|3|anti-sense L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|372|3|anti-sense L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|372|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 101.87 1 105.38 104.88 105.88 3.5151 0 0 0 0.40625 1 24828 24828 2.3027 0 1 45009 15011 28429 28442 51847 51847 0.10392288636899139 TNRRLVID 8 Unmodified _TNRRLVID_ 0 0 0 REV__nc|ENSG00000072201|Q8TBB1-2|LNX1 REV__nc|ENSG00000072201|Q8TBB1-2|LNX1 MSMS UPN47_class_I_Rep_3 4 493.3183898925781 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 69.696 1 72.901 72.401 73.401 3.2044 0 0 0 0.40625 1 17008 17008 2.3027 0 1 + 45010 17826 28430 28443 51848 51848 0.07351680911654057 TNRTRPRQP 9 Unmodified _TNRTRPRQP_ 0 0 0 REV__L1PA10_dup6187|chr16:47703656-47704493:+|1.246817646388266|0.0141703745738326|6.46|151.0|12|2|sense REV__L1PA10_dup6187|chr16:47703656-47704493:+|1.246817646388266|0.0141703745738326|6.46|151.0|12|2|sense MSMS UPN47_class_I_Rep_2 3 563.3165283203125 2 563.31542 1124.61629 NaN NaN NaN NaN NaN NaN NaN 38.121 1 41.509 41.009 42.009 3.3879 0 0 0 0.38916 1 7347 7347 3.2813 0.54611 1 + 45011 28926 28431 28444 51849 51849 0.05896388920473328 TNSNQAEI 8 Unmodified _TNSNQAEI_ 0 0 0 L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|39|1|sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|39|1|sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|39|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.706298828125 2 438.706514 875.398475 -0.45339 -0.0001989 0.53849 0.00023624 0.085102 3.7335E-05 438.7066246561738 18.478 1.0401 22.058 21.614 22.654 3.5806 198 124 2 0 0 0 0.82752 1 1579 1579 10.074 0 1 100700 45012 15131 28432 28445 51850 51850 -0.04420845792651562 TNSSSSLRY 9 Unmodified _TNSSSSLRY_ 0 0 0 L1PA2_dup1353|chr4:139428172-139430321:-|1.174922806995638|0.0826679230337592|3.83|151.0|60|1|anti-sense L1PA2_dup1353|chr4:139428172-139430321:-|1.174922806995638|0.0826679230337592|3.83|151.0|60|1|anti-sense L1PA2_dup1353|chr4:139428172-139430321:-|1.174922806995638|0.0826679230337592|3.83|151.0|60|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 507.7461853027344 2 507.74617 1013.47779 -0.050517 -2.565E-05 -0.23349 -0.00011856 -0.28401 -0.0001442 507.7458978883472 25.119 0.71191 25.119 24.916 25.628 0 119 67 3 0 0 0 0.32682 1 3430 3430 12.241 0 1 82427 45013 14184 28433 28446 51851 51851 -0.028411988385187215 TNTHRRRL 8 Unmodified _TNTHRRRL_ 0 0 0 REV__L1PB3_dup607|chr3:122838725-122840385:+|1.550534507462122|0.0449411644854061|5.11|151.0|28|2|sense REV__L1PB3_dup607|chr3:122838725-122840385:+|1.550534507462122|0.0449411644854061|5.11|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.3047485351562 2 527.304855 1052.59516 0.42421 0.00022369 0.53807 0.00028373 0.96228 0.00050742 527.305102356276 90.277 0.54247 93.967 93.637 94.179 3.6899 100 71 2 0 0 0 0.82752 1 22545 22545 0.79363 0 1 92668 + 45014 30569 28434 28447 51852 51852 0.07096423611619684 TNTHRRRL 8 Unmodified _TNTHRRRL_ 0 0 0 REV__L1PB3_dup607|chr3:122838725-122840385:+|1.550534507462122|0.0449411644854061|5.11|151.0|28|2|sense REV__L1PB3_dup607|chr3:122838725-122840385:+|1.550534507462122|0.0449411644854061|5.11|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.3051147460938 2 527.304855 1052.59516 0.41337 0.00021797 0.41086 0.00021665 0.82423 0.00043462 527.3050263039181 90.383 0.51979 93.78 93.481 94 3.3976 96 68 2 0 0 0 0.82752 1 22667 22667 0.79363 0 1 135940 + 45015 30569 28434 28447 51853 51853 0.07096423611619684 TNTLRILAL 9 Unmodified _TNTLRILAL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN47_class_I_Rep_1 2 507.8189697265625 2 507.818941 1013.62333 0.22236 0.00011292 -0.16533 -8.396E-05 0.057026 2.8959E-05 507.8188690040062 63.014 0.82074 66.373 65.963 66.784 3.3595 103 62 2 0 0 0 0.026395 4 14868 14829;14868;14904;14948 59.368 30.874 1 264670 45016 5270 28435 28448 51854;51855;51856;51857 51855 0.1170630874833023 TNTLRILAL 9 Unmodified _TNTLRILAL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN47_class_I_Rep_2 3 507.819091796875 2 507.818941 1013.62333 0.1307 6.6374E-05 -0.26384 -0.00013398 -0.13314 -6.761E-05 507.8187897129588 63.277 0.86002 66.533 66.217 67.077 3.2558 123 66 2 0 0 0 0.073198 3 14966 14966;15006;15122 40.239 12.61 1 263130 45017 5270 28435 28448 51858;51859;51860 51858 0.1170630874833023 TNTLRILAL 9 Unmodified _TNTLRILAL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN47_class_I_Rep_3 4 507.81878662109375 2 507.818941 1013.62333 0.23319 0.00011842 -0.31546 -0.0001602 -0.082266 -4.1776E-05 507.81879067829215 63.366 0.7648 66.536 66.159 66.924 3.1698 103 58 2 0 0 0 0.073198 3 15147 15108;15147;15157 40.239 12.61 1 286820 45018 5270 28435 28448 51861;51862;51863 51862 0.1170630874833023 TNTTAPHTHW 10 Unmodified _TNTTAPHTHW_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|70|3|sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|70|3|sense MSMS UPN46_class_I_Rep_3 1 583.2706298828125 2 583.272887 1164.53122 NaN NaN NaN NaN NaN NaN NaN 15.261 1 15.261 14.761 15.761 0 0 0 0 0.53105 1 837 837 1.3295 0.13619 1 + 45019 25336 28436 28449 51864 51864 -0.04446401336008421 TNVGNSFSGP 10 Unmodified _TNVGNSFSGP_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS UPN47_class_I_Rep_2 3 490.2278747558594 2 490.227613 978.440674 -0.11143 -5.4628E-05 0.36533 0.00017909 0.25389 0.00012447 490.22772527058135 32.932 0.89948 36.387 36.126 37.026 3.4547 127 70 2 0 0 0 0.53414 1 5744 5744 7.609 7.609 1 350420 45020 2362 28437 28450 51865 51865 -0.049408703842800605 TNVHRKAL 8 Unmodified _TNVHRKAL_ 0 0 0 REV__L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|44|3|sense REV__L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|44|3|sense MSMS UPN47_class_I_Rep_1 2 469.7791748046875 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 84.187 1 87.753 87.253 88.253 3.5655 0 0 0 0.40625 1 21063 21063 2.3027 0 1 + 45021 27027 28438 28451 51866 51866 0.0744771560279105 TNVMYRTVKS 10 Unmodified _TNVMYRTVKS_ 0 0 0 REV__L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|42|2|sense REV__L1ME1_dup3336|chr2:63156759-63158463:-|1.2634501792113833|0.0922150525614077|3.78|151.0|42|2|sense MSMS UPN47_class_I_Rep_2 3 599.8182983398438 2 599.816073 1197.61759 NaN NaN NaN NaN NaN NaN NaN 45.299 1 48.653 48.153 49.153 3.3534 0 0 0 0.53105 1 9532 9532 1.1933 0.59184 1 + 45022 27761 28439 28452 51867 51867 0.026688421743756408 TNVRQGRR 8 Unmodified _TNVRQGRR_ 0 0 0 ENST00000490180.2_1_14:65198440-65203695:+|nuORF;nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3 ENST00000490180.2_1_14:65198440-65203695:+|nuORF ENST00000490180.2_1_14:65198440-65203695:+|nuORF MSMS UPN48_class_I_Rep_3 7 493.7850341796875 2 493.783756 985.552959 NaN NaN NaN NaN NaN NaN NaN 37.424 1 41.087 40.587 41.587 3.663 0 0 0 0.40625 1 6307 6307 2.3027 0.4585 1 45023 2553 28440 28453 51868 51868 0.05960448203245505 TNVVCKYNG 9 Unmodified _TNVVCKYNG_ 0 0 0 L1MB3_dup432|chr1:51434162-51434671:+|2.080293871357024|0.0145099873752662|7.16|151.0|12|2|sense L1MB3_dup432|chr1:51434162-51434671:+|2.080293871357024|0.0145099873752662|7.16|151.0|12|2|sense L1MB3_dup432|chr1:51434162-51434671:+|2.080293871357024|0.0145099873752662|7.16|151.0|12|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 499.74346923828125 2 499.242209 996.469866 -0.028223 -1.409E-05 1.0552 0.00052682 1.027 0.00051273 499.243805864062 26.513 0.82018 26.513 26.212 27.032 0 155 68 3 0 0 0 0.47493 2 3761 3761;3771 3.2813 0.97858 1 82832 45024 10431 28441 28454 51869;51870 51869 -0.02851049359640001 TNVVKLLS 8 Unmodified _TNVVKLLS_ 0 0 0 REV__L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|68|1|anti-sense REV__L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|68|1|anti-sense MSMS UPN47_class_I_Rep_1 2 437.2743225097656 2 437.273835 872.533118 NaN NaN NaN NaN NaN NaN NaN 98.038 1 101.82 101.32 102.32 3.7861 0 0 0 0.40738 1 24276 24276 0.79363 0 1 + 45025 25592 28442 28455 51871 51871 0.09175259419919257 TNVVKPHL 8 Unmodified _TNVVKPHL_ 0 0 0 AluSq2_dup38575|chr11:78413803-78414115:+|1.1187455828972142|0.0104775109613208|6.74|151.0|2|1|sense AluSq2_dup38575|chr11:78413803-78414115:+|1.1187455828972142|0.0104775109613208|6.74|151.0|2|1|sense AluSq2_dup38575|chr11:78413803-78414115:+|1.1187455828972142|0.0104775109613208|6.74|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 454.271240234375 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 29.173 1 32.497 31.997 32.997 3.3235 0 0 0 0.40625 1 4679 4679 2.3027 0 1 45026 256 28443 28456 51872 51872 0.0716979499700301 TNVYFLIP 8 Unmodified _TNVYFLIP_ 0 0 0 MLT1D_dup19032|chr19:36835583-36836058:-|1.1852830822272262|0.4061987537059841|1.54|151.0|1|1|sense MLT1D_dup19032|chr19:36835583-36836058:-|1.1852830822272262|0.4061987537059841|1.54|151.0|1|1|sense MLT1D_dup19032|chr19:36835583-36836058:-|1.1852830822272262|0.4061987537059841|1.54|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 483.76708984375 2 483.768386 965.522219 NaN NaN NaN NaN NaN NaN NaN 40.472 1 43.843 43.343 44.343 3.3712 0 0 0 0.40625 1 8062 8062 2.3027 0 1 45027 16344 28444 28457 51873 51873 0.03807857045626406 TNYHHFNV 8 Unmodified _TNYHHFNV_ 0 0 0 REV__L1MB8_dup16228|chr22:21802736-21803763:-|1.2689583846854762|0.0558229289981114|4.51|151.0|11|1|sense REV__L1MB8_dup16228|chr22:21802736-21803763:-|1.2689583846854762|0.0558229289981114|4.51|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 516.2376098632812 2 516.238316 1030.46208 NaN NaN NaN NaN NaN NaN NaN 21.184 1 24.534 24.034 25.034 3.3496 0 0 0 0.40746 1 2328 2328 0.69038 0 1 + 45028 26388 28445 28458 51874 51874 -0.05193440564926277 TNYPKETF 8 Unmodified _TNYPKETF_ 0 0 0 REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|138|1|anti-sense REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|138|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 500.2423400878906 2 500.242732 998.470912 0.29082 0.00014548 -0.52338 -0.00026182 -0.23256 -0.00011634 500.2422875439668 64.932 0.45122 68.44 68.208 68.659 3.5077 50 31 2 0 0 0 0.82752 1 14639 14639 15.847 1.0089 1 116510 + 45029 31491 28446 28459 51875 51875 -0.028385117190964593 TPAIHGKKLQ 10 Unmodified _TPAIHGKKLQ_ 0 0 0 REV__HERVK9-int_dup315|chr7:152041271-152043490:-|1.0628868882723146|0.038323247889474|4.79|149.0|32|2|sense REV__HERVK9-int_dup315|chr7:152041271-152043490:-|1.0628868882723146|0.038323247889474|4.79|149.0|32|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.8291015625 2 546.82984 1091.64513 0.3992 0.00021829 -0.21351 -0.00011675 0.18569 0.00010154 546.8296294839336 45.69 0.75238 49.448 49.111 49.863 3.7579 89 56 2 0 0 0 0.54466 1 8849 8849 6.2058 1.3088 1 148450 + 45030 23839 28447 28460 51876 51876 0.10297113496881138 TPALLALPS 9 Unmodified _TPALLALPS_ 0 0 0 ENST00000534706.1_1_11:6630285-6630453:+|nuORF ENST00000534706.1_1_11:6630285-6630453:+|nuORF ENST00000534706.1_1_11:6630285-6630453:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 441.7681884765625 2 441.768386 881.522219 -0.077464 -3.4221E-05 -0.089571 -3.957E-05 -0.16703 -7.3791E-05 441.7682019061066 96.721 0.98116 100.2 99.85 100.83 3.4791 304 141 3 0 0 0 0.40174 1 23795 23795 7.9102 0 1 3612000 45031 7319 28448 28461 51877 51877 0.07671857045602337 TPALLALPS 9 Unmodified _TPALLALPS_ 0 0 0 ENST00000534706.1_1_11:6630285-6630453:+|nuORF ENST00000534706.1_1_11:6630285-6630453:+|nuORF ENST00000534706.1_1_11:6630285-6630453:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 441.7681884765625 2 441.768386 881.522219 -0.026516 -1.1714E-05 -0.10111 -4.4666E-05 -0.12762 -5.638E-05 441.7681934738912 96.591 0.94635 100.2 99.774 100.72 3.6124 232 113 3 0 0 0 0.40174 1 23256 23256 7.9102 0 1 2513200 45032 7319 28448 28461 51878 51878 0.07671857045602337 TPALLALPS 9 Unmodified _TPALLALPS_ 0 0 0 ENST00000534706.1_1_11:6630285-6630453:+|nuORF ENST00000534706.1_1_11:6630285-6630453:+|nuORF ENST00000534706.1_1_11:6630285-6630453:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 441.7680358886719 2 441.768386 881.522219 0.12681 5.6021E-05 -0.22993 -0.00010158 -0.10312 -4.5554E-05 441.7681310057335 96.391 0.88155 100.17 99.809 100.69 3.7804 275 115 3 0 0 0 0.40174 1 22888 22888 7.9102 0.62092 1 2481000 45033 7319 28448 28461 51879 51879 0.07671857045602337 TPAPSPIDSSL 11 Unmodified _TPAPSPIDSSL_ 0 0 0 REV__L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|112|3|sense REV__L1PB1_dup4373|chr5:116191112-116195717:+|3.5616585652083894|0.0663193015863858|5.75|151.0|112|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.77978515625 2 542.779679 1083.5448 -0.23514 -0.00012763 0.1053 5.7153E-05 -0.12984 -7.0474E-05 542.7796531603194 27.681 0.63971 31.024 30.816 31.455 3.3422 87 52 2 0 0 0 0.57992 1 4245 4245 5.7319 0.50118 1 88453 + 45034 30406 28449 28462 51880 51880 0.0063741165256487875 TPARKRGNRR 10 Unmodified _TPARKRGNRR_ 0 0 0 nc|ENSG00000113790|Q08426-2|EHHADH;ENSG00000113790|ENST00000231887|EHHADH nc|ENSG00000113790|Q08426-2|EHHADH nc|ENSG00000113790|Q08426-2|EHHADH MSMS UPN46_class_I_Rep_3 1 606.3613891601562 2 606.363236 1210.71192 NaN NaN NaN NaN NaN NaN NaN 34.921 1 34.921 34.421 35.421 0 0 0 0 0.53105 1 6295 6295 1.1933 0.12188 1 45035 2060 28450 28463 51881 51881 0.11499161831352467 TPAVPLTLLS 10 Unmodified _TPAVPLTLLS_ 0 0 0 ENSG00000198089.16,SFI1,chr22,+,I10.1,31550678,31556941|34|7.54|1|intron ENSG00000198089.16,SFI1,chr22,+,I10.1,31550678,31556941|34|7.54|1|intron ENSG00000198089.16,SFI1,chr22,+,I10.1,31550678,31556941|34|7.54|1|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 506.2354736328125 2 506.307875 1010.6012 0.42913 0.00021727 3.0721 0.0015554 3.5012 0.0017727 506.3092213806716 55.091 0.05164 58.647 58.623 58.674 3.5559 4 2 2 0 0 0 0.84575 1 11715 11715 1.6526 0 1 48304 45036 5409 28451 28464 51882 51882 0.09632084279917308 TPCDSRLAGFH 11 Unmodified _TPCDSRLAGFH_ 0 0 0 REV__THE1A-int_dup867|chrX:3916824-3918341:+|1.979924731700724|0.0141769316208033|7.13|149.0|25|2|sense REV__THE1A-int_dup867|chrX:3916824-3918341:+|1.979924731700724|0.0141769316208033|7.13|149.0|25|2|sense MSMS UPN47_class_I_Rep_3 4 602.2811279296875 2 602.282397 1202.55024 NaN NaN NaN NaN NaN NaN NaN 33.258 1 36.533 36.033 37.033 3.2748 0 0 0 0.38417 1 5906 5906 1.1933 0.39971 1 + 45037 32223 28452 28465 51883 51883 -0.04293188036604079 TPCFWCQVW 9 Unmodified _TPCFWCQVW_ 0 0 0 L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|137|3|anti-sense L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|137|3|anti-sense L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|137|3|anti-sense MSMS UPN47_class_I_Rep_3 4 585.2473754882812 2 585.24898 1168.48341 NaN NaN NaN NaN NaN NaN NaN 111.14 1 114.67 114.17 115.17 3.529 0 0 0 0.39518 1 27272 27272 1.8442 1.0506 1 45038 11971 28453 28466 51884 51884 -0.09409514852063694 TPCMYKRYF 9 Unmodified _TPCMYKRYF_ 0 0 0 REV__nc|ENSG00000134014|Q9H9T3-4|ELP3 REV__nc|ENSG00000134014|Q9H9T3-4|ELP3 MSMS UPN48_class_I_Rep_3 7 604.7833251953125 2 604.783187 1207.55182 NaN NaN NaN NaN NaN NaN NaN 93.299 1 97.191 96.691 97.691 3.8914 0 0 0 0.39428 1 22108 22108 2.0598 0 1 + 45039 31985 28454 28467 51885 51885 -0.04365270272205635 TPDLEALH 8 Unmodified _TPDLEALH_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 448.2290954589844 2 448.229625 894.444697 0.14515 6.5059E-05 -0.51685 -0.00023167 -0.37171 -0.00016661 448.22928992581785 109.09 0.08149 112.76 112.74 112.82 3.6715 16 10 2 0 0 0 0.72333 1 25969 25969 0.69038 0 1 2417300 + 45040 19913 28455 28468 51886 51886 -0.0067478089058568 TPDLEALH 8 Unmodified _TPDLEALH_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 448.229625 894.444697 0.0085734 3.8428E-06 -0.34796 -0.00015596 -0.33938 -0.00015212 448.22931776745213 109.11 0.065826 112.64 112.63 112.69 3.5307 -0.057294 -3.0142E-05 NaN 0.69038 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2155500 + 45041 19913 28455 28468 -0.0067478089058568 TPDLEALH 8 Unmodified _TPDLEALH_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 448.229625 894.444697 -0.20063 -8.9926E-05 -0.13044 -5.8466E-05 -0.33106 -0.00014839 448.22948801809645 109.11 0.10123 112.64 112.6 112.71 3.5347 -0.058152 0.00016486 NaN 0.69038 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3538000 + 45042 19913 28455 28468 -0.0067478089058568 TPDLEALH 8 Unmodified _TPDLEALH_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 448.229625 894.444697 -0.0025491 -1.1426E-06 -0.42785 -0.00019178 -0.4304 -0.00019292 448.22933301377674 109.07 0.082336 112.7 112.68 112.76 3.6321 0.001662 -0.00010177 NaN 0.69038 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2471900 + 45043 19913 28455 28468 -0.0067478089058568 TPDMEGCRTH 10 Unmodified _TPDMEGCRTH_ 0 0 0 REV__ENST00000592274.1_1_19:3607290-3611799:+|nuORF REV__ENST00000592274.1_1_19:3607290-3611799:+|nuORF MSMS UPN48_class_I_Rep_3 7 573.7363891601562 2 573.736965 1145.45938 NaN NaN NaN NaN NaN NaN NaN 119.7 1 123.26 122.76 123.76 3.566 0 0 0 0.53105 1 28446 28446 1.6526 0 1 + 45044 23177 28456 28469 51887 51887 -0.1075340007637351 TPDPIQIHP 9 Unmodified _TPDPIQIHP_ 0 0 0 REV__MER68_dup774|chrX:16724021-16724537:-|1.399843637465695|0.0117493680936884|6.9|151.0|24|2|anti-sense REV__MER68_dup774|chrX:16724021-16724537:-|1.399843637465695|0.0117493680936884|6.9|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 509.28424072265625 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 39.336 1 43.001 42.501 43.501 3.6653 0 0 0 0.28335 1 7682 7682 11.64 2.2929 1 + 45045 31541 28457 28470 51888 51888 0.021491699262014663 TPDPIQIHP 9 Unmodified _TPDPIQIHP_ 0 0 0 REV__MER68_dup774|chrX:16724021-16724537:-|1.399843637465695|0.0117493680936884|6.9|151.0|24|2|anti-sense REV__MER68_dup774|chrX:16724021-16724537:-|1.399843637465695|0.0117493680936884|6.9|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 509.28424072265625 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 39.464 1 43.131 42.631 43.631 3.6668 0 0 0 0.19137 1 7721 7721 16.942 1.0951 1 + 45046 31541 28457 28470 51889 51889 0.021491699262014663 TPDPQSPLY 9 Unmodified _TPDPQSPLY_ 0 0 0 L1PB1_dup5321|chr6:117595399-117597448:-|1.5832605033501792|0.1081581556150547|3.87|151.0|72|1|anti-sense L1PB1_dup5321|chr6:117595399-117597448:-|1.5832605033501792|0.1081581556150547|3.87|151.0|72|1|anti-sense L1PB1_dup5321|chr6:117595399-117597448:-|1.5832605033501792|0.1081581556150547|3.87|151.0|72|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 509.2840881347656 2 509.248015 1016.48148 -0.25471 -0.00012971 0.78527 0.0003999 0.53056 0.00027019 509.2485466045156 39.68 0.10159 43.059 43.022 43.124 3.3785 6 5 2 0 0 0 0.086155 1 7840 7840 16.942 2.3606 1 21896 45047 15142 28458 28471 51890 51890 -0.0261052906465693 TPEPPSGPV 9 Unmodified _TPEPPSGPV_ 0 0 0 nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21;nc|ENSG00000172995|Q9UBL0-5|ARPP21 nc|ENSG00000172995|Q9UBL0-4|ARPP21 nc|ENSG00000172995|Q9UBL0-4|ARPP21 MSMS UPN46_class_I_Rep_3 1 440.7989501953125 2 440.724175 879.433798 NaN NaN NaN NaN NaN NaN NaN 26.481 1 26.481 25.981 26.981 0 0 0 0 0.39428 1 3793 3793 2.0598 0.21551 1 45048 4604 28459 28472 51891 51891 -0.010741832648477612 TPEQIEKIY 9 Unmodified _TPEQIEKIY_ 0 0 0 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 MULTI-MSMS UPN47_class_I_Rep_1 2 560.798095703125 2 560.797872 1119.58119 0.1944 0.00010902 0.016827 9.4366E-06 0.21123 0.00011845 560.797767394189 48.171 0.8299 51.853 51.529 52.359 3.6819 101 46 3 0 0 0 0.074399 4 10385 10298;10343;10385;10426 39.95 13.682 1 383930 45049 1280 28460 28473 51892;51893;51894;51895 51894 0.026182885492971764 TPEQIEKIY 9 Unmodified _TPEQIEKIY_ 0 0 0 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 MULTI-MSMS UPN47_class_I_Rep_2 3 560.7978515625 2 560.797872 1119.58119 0.36698 0.0002058 0.0054999 3.0843E-06 0.37248 0.00020889 560.7977125050662 48.548 0.85246 51.895 51.427 52.28 3.3465 94 43 3 0 0 0 0.10568 4 10481 10405;10435;10481;10530 32.786 11.249 1 420280 45050 1280 28460 28473 51896;51897;51898;51899 51898 0.026182885492971764 TPEQIEKIY 9 Unmodified _TPEQIEKIY_ 0 0 0 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 MULTI-MSMS UPN47_class_I_Rep_3 4 560.7981567382812 2 560.797872 1119.58119 0.40929 0.00022953 -0.060335 -3.3836E-05 0.34896 0.00019569 560.797681550236 48.552 0.8625 51.786 51.44 52.303 3.2345 101 44 3 0 0 0 0.074399 4 10583 10493;10539;10583;10627 39.95 11.249 1 426950 45051 1280 28460 28473 51900;51901;51902;51903 51902 0.026182885492971764 TPETLPAQLD 10 Unmodified _TPETLPAQLD_ 0 0 0 REV__ENST00000379953.6_1_6:6654860-6655043:+|nuORF REV__ENST00000379953.6_1_6:6654860-6655043:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 542.7783203125 2 542.779679 1083.5448 -0.038762 -2.1039E-05 -0.13181 -7.1544E-05 -0.17057 -9.2583E-05 542.7796973597458 27.485 0.52516 31.252 30.981 31.506 3.7662 82 40 3 0 0 0 0.56374 1 4037 4037 1.1933 0 1 118210 + 45052 22045 28461 28474 51904 51904 0.0063741165256487875 TPFGRGPL 8 Unmodified _TPFGRGPL_ 0 0 0 ENST00000301873.9_2_11:65325392-65325698:-|nuORF ENST00000301873.9_2_11:65325392-65325698:-|nuORF ENST00000301873.9_2_11:65325392-65325698:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 422.5924987792969 2 422.73742 843.460287 -0.11328 -4.7887E-05 0.09269 3.9183E-05 -0.020589 -8.7037E-06 422.7373808926817 49.891 0.34821 53.416 53.306 53.654 3.5246 27 22 2 0 0 0 0.72333 1 10129 10129 16.942 2.3606 1 87727 45053 6076 28462 28475 51905 51905 0.03229550417131577 TPFLLKIK 8 Unmodified _TPFLLKIK_ 0 0 0 AluSx1_dup48522|chr8:27331460-27331782:-|2.3724865532734354|0.0098116896020439|7.92|151.0|2|1|sense AluSx1_dup48522|chr8:27331460-27331782:-|2.3724865532734354|0.0098116896020439|7.92|151.0|2|1|sense AluSx1_dup48522|chr8:27331460-27331782:-|2.3724865532734354|0.0098116896020439|7.92|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.3180847167969 2 480.318046 958.621539 0.10051 4.8276E-05 -0.085683 -4.1155E-05 0.014826 7.1212E-06 480.3178836359902 48.308 1.2612 51.657 51.344 52.606 3.3492 103 70 2 0 0 0 0.82752 1 10386 10386 4.756 0 1 183190 45054 319 28463 28476 51906 51906 0.14057299730370687 TPFPGLKGF 9 Unmodified _TPFPGLKGF_ 0 0 0 REV__ENST00000443119.7_3_16:70406057-70406162:+|nuORF REV__ENST00000443119.7_3_16:70406057-70406162:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.267822265625 2 482.268553 962.522553 0.274 0.00013214 -0.3945 -0.00019025 -0.1205 -5.8111E-05 482.2681424664941 58.502 0.69422 61.784 61.455 62.149 3.2818 53 38 2 0 0 0 0.46434 1 13504 13504 4.3292 1.7518 1 94133 + 45055 22340 28464 28477 51907 51907 0.039792767654716954 TPFPKNFL 8 Unmodified _TPFPKNFL_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MULTI-MSMS UPN47_class_I_Rep_1 2 482.2683410644531 2 482.268553 962.522553 0.13801 6.6559E-05 -0.19497 -9.4026E-05 -0.056954 -2.7467E-05 482.2683296845594 58.193 0.68277 61.63 61.307 61.989 3.437 64 43 2 0 0 0 0.82752 3 13383 13383;13426;13474 10.824 0 1 80653 45056 4560 28465 28478 51908;51909;51910 51908 0.03979276765460327 TPFPKNFL 8 Unmodified _TPFPKNFL_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MULTI-MSMS UPN47_class_I_Rep_2 3 482.2679138183594 2 482.268553 962.522553 0.274 0.00013214 -0.3945 -0.00019025 -0.1205 -5.8111E-05 482.2681424664941 58.502 0.69422 61.784 61.455 62.149 3.2818 53 38 2 0 0 0 0.82752 1 13560 13560 4.756 0 1 94133 45057 4560 28465 28478 51911 51911 0.03979276765460327 TPFPKNFL 8 Unmodified _TPFPKNFL_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MSMS UPN47_class_I_Rep_3 4 482.2686767578125 2 482.268553 962.522553 NaN NaN NaN NaN NaN NaN NaN 58.471 1 61.637 61.137 62.137 3.1658 0 0 0 0.39242 1 13588 13588 10.824 0 1 45058 4560 28465 28478 51912 51912 0.03979276765460327 TPFPKNFL 8 Unmodified _TPFPKNFL_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MSMS UPN47_class_I_Rep_3 4 482.26873779296875 2 482.268553 962.522553 NaN NaN NaN NaN NaN NaN NaN 58.607 1 61.773 61.273 62.273 3.1658 0 0 0 0.39242 1 13631 13631 10.824 0 1 45059 4560 28465 28478 51913 51913 0.03979276765460327 TPFPKNFL 8 Unmodified _TPFPKNFL_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MSMS UPN47_class_I_Rep_3 4 482.2687072753906 2 482.268553 962.522553 NaN NaN NaN NaN NaN NaN NaN 58.756 1 61.922 61.422 62.422 3.1658 0 0 0 0.40157 1 13677 13677 7.2892 0 1 45060 4560 28465 28478 51914 51914 0.03979276765460327 TPFPKNFL 8 Unmodified _TPFPKNFL_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MSMS UPN47_class_I_Rep_3 4 482.2683410644531 2 482.268553 962.522553 NaN NaN NaN NaN NaN NaN NaN 58.941 1 62.107 61.607 62.607 3.1658 0 0 0 0.4044 1 13734 13734 4.756 0 1 45061 4560 28465 28478 51915 51915 0.03979276765460327 TPFVVKRQLP 10 Unmodified _TPFVVKRQLP_ 0 0 0 L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|31|1|anti-sense L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|31|1|anti-sense L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 592.8616333007812 2 592.861141 1183.70773 0.51033 0.00030255 0.26941 0.00015972 0.77973 0.00046227 592.8612229313184 109.26 0.59862 112.87 112.76 113.36 3.6046 143 75 2 0 0 0 0.54466 1 26956 26956 6.2058 6.2058 1 2850000 45062 12051 28466 28479 51916 51916 0.12322259565098648 TPGNRIVYLYT 11 Unmodified _TPGNRIVYLYT_ 0 0 0 ENST00000503574.1_1_4:109543115-109543474:+|nuORF;ENSG00000109475|ENST00000394667|RPL34 ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENST00000503574.1_1_4:109543115-109543474:+|nuORF MSMS UPN47_class_I_Rep_3 4 648.8505249023438 2 648.85097 1295.68739 NaN NaN NaN NaN NaN NaN NaN 53.543 1 56.738 56.238 57.238 3.1948 0 0 0 0.38417 1 12087 12087 6.1918 0.89496 1 45063 7140 28467 28480 51917 51917 0.05137044114621858 TPHHLVYC 8 Unmodified _TPHHLVYC_ 0 0 0 ENSG00000226372|ENST00000441525|DCAF8L1 ENSG00000226372|ENST00000441525|DCAF8L1 ENSG00000226372|ENST00000441525|DCAF8L1 MSMS UPN48_class_I_Rep_3 7 485.23626708984375 2 485.234187 968.453822 NaN NaN NaN NaN NaN NaN NaN 105.74 1 109.44 108.94 109.94 3.702 0 0 0 0.40404 1 24951 24951 5.2307 0.90143 1 45064 5664 28468 28481 51918 51918 -0.031667108058854865 TPHHPPLL 8 Unmodified _TPHHPPLL_ 0 0 0 HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|8|2|sense HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|8|2|sense HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 456.2593994140625 2 456.25852 910.502486 NaN NaN NaN NaN NaN NaN NaN 98.515 1 102.31 101.81 102.81 3.7926 0 0 0 0.40738 1 24387 24387 0.79363 0 1 45065 7797 28469 28482 51919 51919 0.043655258255284934 TPHLEEPKF 9 Unmodified _TPHLEEPKF_ 0 0 0 REV__ENST00000219771.7_1_16:29690360-29708729:+|nuORF REV__ENST00000219771.7_1_16:29690360-29708729:+|nuORF MSMS UPN48_class_I_Rep_2 6 549.2847900390625 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 39.347 1 43.077 42.577 43.577 3.7297 0 0 0 0.37476 1 6970 6970 6.7232 0.51738 1 + 45066 18227 28470 28483 51920 51920 0.010894390976545765 TPHLHSIL 8 Unmodified _TPHLHSIL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS UPN47_class_I_Rep_1 2 459.2630920410156 2 459.263802 916.513051 -0.3383 -0.00015537 -0.44951 -0.00020644 -0.78781 -0.00036181 459.2633075988599 37.431 0.85992 41.096 40.769 41.629 3.6652 139 62 3 0 0 0 0.82752 1 7102 7102 30.225 5.5509 1 229370 45067 1538 28471 28484 51921 51921 0.05145508479961336 TPHLHSIL 8 Unmodified _TPHLHSIL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS UPN47_class_I_Rep_2 3 459.2635803222656 2 459.263802 916.513051 -0.45689 -0.00020983 -0.49337 -0.00022659 -0.95026 -0.00043642 459.2633118482956 37.912 0.81804 41.3 40.899 41.717 3.3879 124 67 2 0 0 0 0.82752 2 7243 7243;7286 44.407 6.2558 1 191350 45068 1538 28471 28484 51922;51923 51922 0.05145508479961336 TPHLHSIL 8 Unmodified _TPHLHSIL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS UPN47_class_I_Rep_3 4 459.2624206542969 2 459.263802 916.513051 -0.64847 -0.00029782 -0.58473 -0.00026855 -1.2332 -0.00056636 459.2632596880185 38.087 0.85192 41.329 40.966 41.818 3.2414 112 62 2 0 0 0 0.82752 1 7446 7446 30.225 5.5509 1 258250 45069 1538 28471 28484 51924 51924 0.05145508479961336 TPHQHLSF 8 Unmodified _TPHQHLSF_ 0 0 0 L1M4_dup7099|chr6:156974904-156975538:-|1.5656322815644357|0.019763411191508|6.31|151.0|36|2|anti-sense L1M4_dup7099|chr6:156974904-156975538:-|1.5656322815644357|0.019763411191508|6.31|151.0|36|2|anti-sense L1M4_dup7099|chr6:156974904-156975538:-|1.5656322815644357|0.019763411191508|6.31|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 483.7435607910156 2 483.743234 965.471915 -0.34739 -0.00016805 0.56285 0.00027228 0.21546 0.00010423 483.74353994114836 20.792 0.24758 24.436 24.236 24.484 3.6436 38 27 2 0 0 0 0.82752 1 2156 2156 2.3027 0 1 62094 45070 8904 28472 28485 51925 51925 -0.01220252559517121 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 72.185 1 72.185 71.685 72.685 0 0 0 0 0.4007 1 16673 16673 0.52476 0 1 45071 7603 28473 28486 51926 51926 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3587036132812 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 77.978 1 77.978 77.478 78.478 0 0 0 0 0.4007 1 18245 18245 0.52476 0 1 45072 7603 28473 28486 51927 51927 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3588256835938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 78.242 1 78.242 77.742 78.742 0 0 0 0 0.4007 1 18317 18317 0.52476 0 1 45073 7603 28473 28486 51928 51928 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3588256835938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 80.61 1 80.61 80.11 81.11 0 0 0 0 0.4007 1 18997 18997 0.52476 0 1 45074 7603 28473 28486 51929 51929 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3584594726562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 84.728 1 84.728 84.228 85.228 0 0 0 0 0.39428 1 20174 20174 2.0598 1.4583 1 45075 7603 28473 28486 51930 51930 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3593139648438 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 84.947 1 84.947 84.447 85.447 0 0 0 0 0.4007 1 20239 20239 0.52476 0 1 45076 7603 28473 28486 51931 51931 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3609619140625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 87.026 1 87.026 86.526 87.526 0 0 0 0 0.4007 1 20833 20833 0.52476 0 1 45077 7603 28473 28486 51932 51932 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.359619140625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 91.705 1 91.705 91.205 92.205 0 0 0 0 0.4007 1 22161 22161 0.52476 0 1 45078 7603 28473 28486 51933 51933 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.2764892578125 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 91.855 1 91.855 91.355 92.355 0 0 0 0 0.4007 1 22205 22205 0.52476 0 1 45079 7603 28473 28486 51934 51934 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.35888671875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 94.287 1 94.287 93.787 94.787 0 0 0 0 0.4007 1 22872 22872 0.52476 0 1 45080 7603 28473 28486 51935 51935 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 563.9004516601562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 97.765 1 97.765 97.265 98.265 0 0 0 0 0.4007 1 23798 23798 0.52476 0 1 45081 7603 28473 28486 51936 51936 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3836669921875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 99.534 1 99.534 99.034 100.03 0 0 0 0 0.4007 1 24250 24250 0.52476 0 1 45082 7603 28473 28486 51937 51937 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3587646484375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 106.12 1 106.12 105.62 106.62 0 0 0 0 0.4007 1 25880 25880 0.52476 0 1 45083 7603 28473 28486 51938 51938 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3783569335938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 110.28 1 110.28 109.78 110.78 0 0 0 0 0.4007 1 27155 27155 0.52476 0 1 45084 7603 28473 28486 51939 51939 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3595581054688 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 73.507 1 76.893 76.393 77.393 3.3861 0 0 0 0.4007 1 18052 18052 0.52476 0 1 45085 7603 28473 28486 51940 51940 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3580932617188 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 73.676 1 77.063 76.563 77.563 3.3861 0 0 0 0.4007 1 18100 18100 0.52476 0 1 45086 7603 28473 28486 51941 51941 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3584594726562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 77.035 1 80.45 79.95 80.95 3.4149 0 0 0 0.4007 1 19091 19091 0.52476 0 1 45087 7603 28473 28486 51942 51942 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3599853515625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 81.271 1 84.758 84.258 85.258 3.4874 0 0 0 0.4007 1 20276 20276 0.52476 0 1 45088 7603 28473 28486 51943 51943 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3587036132812 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 83.04 1 86.579 86.079 87.079 3.5386 0 0 0 0.4007 1 20759 20759 0.52476 0 1 45089 7603 28473 28486 51944 51944 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3592529296875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 85.312 1 88.903 88.403 89.403 3.5914 0 0 0 0.4007 1 21304 21304 0.52476 0 1 45090 7603 28473 28486 51945 51945 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3591918945312 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.068 1 89.683 89.183 90.183 3.6153 0 0 0 0.4007 1 21494 21494 0.52476 0 1 45091 7603 28473 28486 51946 51946 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3594360351562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.204 1 89.819 89.319 90.319 3.6153 0 0 0 0.4007 1 21530 21530 0.52476 0 1 45092 7603 28473 28486 51947 51947 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.3585815429688 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.655 1 90.271 89.771 90.771 3.6153 0 0 0 0.4007 1 21648 21648 0.52476 0 1 45093 7603 28473 28486 51948 51948 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.7513427734375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 111.93 1 115.5 115 116 3.572 0 0 0 0.4007 1 27612 27612 0.52476 0 1 45094 7603 28473 28486 51949 51949 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.359130859375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 79.23 1 82.586 82.086 83.086 3.3554 0 0 0 0.4007 1 19713 19713 0.52476 0 1 45095 7603 28473 28486 51950 51950 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.360107421875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 79.929 1 83.299 82.799 83.799 3.3694 0 0 0 0.4007 1 19912 19912 0.52476 0 1 45096 7603 28473 28486 51951 51951 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 83.053 1 86.451 85.951 86.951 3.3984 0 0 0 0.4007 1 20699 20699 0.52476 0 1 45097 7603 28473 28486 51952 51952 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.3590087890625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 83.624 1 87.036 86.536 87.536 3.4116 0 0 0 0.4007 1 20850 20850 0.52476 0 1 45098 7603 28473 28486 51953 51953 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.3590087890625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 111.34 1 114.86 114.36 115.36 3.5226 0 0 0 0.4007 1 27094 27094 0.52476 0 1 45099 7603 28473 28486 51954 51954 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.3587646484375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 113.08 1 116.59 116.09 117.09 3.5171 0 0 0 0.4007 1 27488 27488 0.52476 0 1 45100 7603 28473 28486 51955 51955 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.3596801757812 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 113.61 1 117.12 116.62 117.62 3.5109 0 0 0 0.4007 1 27638 27638 0.52476 0 1 45101 7603 28473 28486 51956 51956 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3587646484375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 73.006 1 76.234 75.734 76.734 3.2271 0 0 0 0.4007 1 18004 18004 0.52476 0 1 45102 7603 28473 28486 51957 51957 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3594360351562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 77.29 1 80.559 80.059 81.059 3.269 0 0 0 0.4007 1 19239 19239 0.52476 0 1 45103 7603 28473 28486 51958 51958 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3587646484375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 78.046 1 81.327 80.827 81.827 3.2816 0 0 0 0.4007 1 19449 19449 0.52476 0 1 45104 7603 28473 28486 51959 51959 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.35888671875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 83.523 1 86.872 86.372 87.372 3.35 0 0 0 0.4007 1 20950 20950 0.52476 0 1 45105 7603 28473 28486 51960 51960 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3590087890625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.566 1 89.946 89.446 90.446 3.3801 0 0 0 0.4007 1 21697 21697 0.52476 0 1 45106 7603 28473 28486 51961 51961 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3585205078125 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.979 1 90.359 89.859 90.859 3.3801 0 0 0 0.4007 1 21797 21797 0.52476 0 1 45107 7603 28473 28486 51962 51962 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3793334960938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 109.09 1 112.62 112.12 113.12 3.5347 0 0 0 0.4007 1 26783 26783 0.52476 0 1 45108 7603 28473 28486 51963 51963 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.32275390625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 111.94 1 115.46 114.96 115.96 3.5207 0 0 0 0.4007 1 27489 27489 0.52476 0 1 45109 7603 28473 28486 51964 51964 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.35986328125 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 67.116 1 70.567 70.067 71.067 3.4516 0 0 0 0.4007 1 15399 15399 0.52476 0 1 45110 7603 28473 28486 51965 51965 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 69.832 1 73.292 72.792 73.792 3.4598 0 0 0 0.4007 1 16228 16228 0.52476 0 1 45111 7603 28473 28486 51966 51966 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3592529296875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 70.043 1 73.502 73.002 74.002 3.4598 0 0 0 0.4007 1 16294 16294 0.52476 0 1 45112 7603 28473 28486 51967 51967 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3588256835938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 79.654 1 83.202 82.702 83.702 3.5487 0 0 0 0.4007 1 19023 19023 0.52476 0 1 45113 7603 28473 28486 51968 51968 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.359619140625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 79.794 1 83.343 82.843 83.843 3.5487 0 0 0 0.4007 1 19058 19058 0.52476 0 1 45114 7603 28473 28486 51969 51969 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.359375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 82.231 1 85.806 85.306 86.306 3.5753 0 0 0 0.4007 1 19633 19633 0.52476 0 1 45115 7603 28473 28486 51970 51970 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.35986328125 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 83.44 1 87.027 86.527 87.527 3.5871 0 0 0 0.4007 1 19954 19954 0.52476 0 1 45116 7603 28473 28486 51971 51971 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.359619140625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.531 1 90.144 89.644 90.644 3.613 0 0 0 0.4007 1 20732 20732 0.52476 0 1 45117 7603 28473 28486 51972 51972 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3588256835938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 96.86 1 100.47 99.969 100.97 3.6088 0 0 0 0.4007 1 23355 23355 0.52476 0 1 45118 7603 28473 28486 51973 51973 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.8264770507812 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 97.394 1 101 100.5 101.5 3.6088 0 0 0 0.4007 1 23495 23495 0.52476 0 1 45119 7603 28473 28486 51974 51974 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.3584594726562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 110.44 1 114.07 113.57 114.57 3.6326 0 0 0 0.4007 1 26811 26811 0.52476 0 1 45120 7603 28473 28486 51975 51975 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3593139648438 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 63.411 1 66.885 66.385 67.385 3.4738 0 0 0 0.4007 1 14254 14254 0.52476 0 1 45121 7603 28473 28486 51976 51976 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3590087890625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 64.871 1 68.35 67.85 68.85 3.4792 0 0 0 0.4007 1 14702 14702 0.52476 0 1 45122 7603 28473 28486 51977 51977 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3594360351562 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 66.969 1 70.465 69.965 70.965 3.4964 0 0 0 0.4007 1 15341 15341 0.52476 0 1 45123 7603 28473 28486 51978 51978 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.35888671875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 69.76 1 73.282 72.782 73.782 3.5216 0 0 0 0.4007 1 16181 16181 0.52476 0 1 45124 7603 28473 28486 51979 51979 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.35888671875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 69.919 1 73.441 72.941 73.941 3.5216 0 0 0 0.4007 1 16230 16230 0.52476 0 1 45125 7603 28473 28486 51980 51980 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3587646484375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 72.488 1 76.053 75.553 76.553 3.5645 0 0 0 0.4007 1 16967 16967 0.52476 0 1 45126 7603 28473 28486 51981 51981 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3593139648438 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 75.053 1 78.643 78.143 79.143 3.59 0 0 0 0.4007 1 17687 17687 0.52476 0 1 45127 7603 28473 28486 51982 51982 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 75.601 1 79.202 78.702 79.702 3.6011 0 0 0 0.4007 1 17833 17833 0.52476 0 1 45128 7603 28473 28486 51983 51983 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 75.926 1 79.528 79.028 80.028 3.6011 0 0 0 0.4007 1 17921 17921 0.52476 0 1 45129 7603 28473 28486 51984 51984 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3598022460938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 81.614 1 85.271 84.771 85.771 3.6567 0 0 0 0.4007 1 19376 19376 0.52476 0 1 45130 7603 28473 28486 51985 51985 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.359619140625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 85.493 1 89.199 88.699 89.699 3.7058 0 0 0 0.4007 1 20332 20332 0.52476 0 1 45131 7603 28473 28486 51986 51986 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.3593139648438 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 85.912 1 89.618 89.118 90.118 3.7058 0 0 0 0.4007 1 20450 20450 0.52476 0 1 45132 7603 28473 28486 51987 51987 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3595581054688 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 64.949 1 68.457 67.957 68.957 3.5077 0 0 0 0.4007 1 14640 14640 0.52476 0 1 45133 7603 28473 28486 51988 51988 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3587036132812 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 71.417 1 74.944 74.444 75.444 3.5266 0 0 0 0.4007 1 16583 16583 0.52476 0 1 45134 7603 28473 28486 51989 51989 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.359130859375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 72.845 1 76.383 75.883 76.883 3.5373 0 0 0 0.4007 1 17008 17008 0.52476 0 1 45135 7603 28473 28486 51990 51990 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3607788085938 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 74.453 1 78.004 77.504 78.504 3.5505 0 0 0 0.4007 1 17442 17442 0.52476 0 1 45136 7603 28473 28486 51991 51991 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 75.423 1 78.989 78.489 79.489 3.5659 0 0 0 0.4007 1 17716 17716 0.52476 0 1 45137 7603 28473 28486 51992 51992 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.35888671875 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 75.648 1 79.214 78.714 79.714 3.5659 0 0 0 0.4007 1 17784 17784 0.52476 0 1 45138 7603 28473 28486 51993 51993 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.7672119140625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 82.286 1 85.992 85.492 86.492 3.7066 0 0 0 0.4007 1 19497 19497 0.52476 0 1 45139 7603 28473 28486 51994 51994 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3591918945312 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 82.975 1 86.682 86.182 87.182 3.7066 0 0 0 0.4007 1 19668 19668 0.52476 0 1 45140 7603 28473 28486 51995 51995 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3585205078125 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 82.988 1 86.694 86.194 87.194 3.7066 0 0 0 0.4007 1 19672 19672 0.52476 0 1 45141 7603 28473 28486 51996 51996 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.826416015625 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 97.022 1 100.93 100.43 101.43 3.9084 0 0 0 0.4007 1 22999 22999 0.52476 0 1 45142 7603 28473 28486 51997 51997 0.14258623412865745 TPILRRLKM 9 Unmodified _TPILRRLKM_ 0 0 0 ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF ENST00000589727.5_1_17:40613024-40622135:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3589477539062 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 101.53 1 105.35 104.85 105.85 3.8153 0 0 0 0.4007 1 24009 24009 0.52476 0 1 45143 7603 28473 28486 51998 51998 0.14258623412865745 TPINAQLKKS 10 Unmodified _TPINAQLKKS_ 0 0 0 REV__L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|38|2|sense REV__L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|38|2|sense MSMS UPN46_class_I_Rep_3 1 550.32568359375 2 550.327131 1098.63971 NaN NaN NaN NaN NaN NaN NaN 68.109 1 68.109 67.609 68.609 0 0 0 0 0.53105 1 15536 15536 1.1933 0 1 + 45144 25623 28474 28487 51999 51999 0.09433389914420331 TPIQLVKIDL 10 Unmodified _TPIQLVKIDL_ 0 0 0 REV__LTR12C_dup1593|chr9:92545064-92546735:+|2.051122407978549|0.0450976289893079|5.51|150.0|77|2|anti-sense REV__LTR12C_dup1593|chr9:92545064-92546735:+|2.051122407978549|0.0450976289893079|5.51|150.0|77|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.355224609375 2 570.355357 1138.69616 NaN NaN NaN NaN NaN NaN NaN 107.54 1 107.54 107.04 108.04 0 0 0 0 0.53105 1 26232 26232 8.1555 0 1 + 45145 30805 28475 28488 52000 52000 0.13236017751091822 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_1 2 485.3079833984375 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.238 1 61.675 61.175 62.175 3.437 0 0 0 0.23173 1 13433 13433 14.405 2.9107 1 45146 4809 28476 28489 52001 52001 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_1 2 485.30816650390625 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.365 1 61.782 61.282 62.282 3.4171 0 0 0 0.035625 1 13472 13472 42.312 15.429 1 45147 4809 28476 28489 52002 52002 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_1 2 485.3084411621094 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.521 1 61.938 61.438 62.438 3.4171 0 0 0 0.031346 1 13520 13520 43.982 12.714 1 45148 4809 28476 28489 52003 52003 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_1 2 485.3080139160156 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.661 1 62.078 61.578 62.578 3.4171 0 0 0 0.10979 1 13563 13563 22.658 6.8109 1 45149 4809 28476 28489 52004 52004 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_1 2 485.3079528808594 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.812 1 62.229 61.729 62.729 3.4171 0 0 0 0.18341 1 13608 13608 17.443 3.0373 1 45150 4809 28476 28489 52005 52005 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_2 3 485.3080749511719 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.527 1 61.808 61.308 62.308 3.2818 0 0 0 0.29913 1 13555 13555 10.8 2.0541 1 45151 4809 28476 28489 52006 52006 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_2 3 485.3081970214844 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.679 1 61.96 61.46 62.46 3.2818 0 0 0 0.10427 1 13602 13602 23.79 8.5413 1 45152 4809 28476 28489 52007 52007 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_2 3 485.3081359863281 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.808 1 62.089 61.589 62.589 3.2818 0 0 0 0.067326 1 13642 13642 32.037 12.676 1 45153 4809 28476 28489 52008 52008 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_2 3 485.30804443359375 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.936 1 62.217 61.717 62.717 3.2818 0 0 0 0.10979 1 13681 13681 22.658 8.2527 1 45154 4809 28476 28489 52009 52009 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_3 4 485.308349609375 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.746 1 61.912 61.412 62.412 3.1658 0 0 0 0.16861 1 13674 13674 18.373 3.1246 1 45155 4809 28476 28489 52010 52010 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_3 4 485.3080749511719 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 58.878 1 62.044 61.544 62.544 3.1658 0 0 0 0.031346 1 13715 13715 43.982 14.141 1 45156 4809 28476 28489 52011 52011 0.11630923719621933 TPISRLVAL 9 Unmodified _TPISRLVAL_ 0 0 0 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 ENSG00000177981|ENST00000317697|ASB8 MSMS UPN47_class_I_Rep_3 4 485.30810546875 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 59.034 1 62.2 61.7 62.7 3.1658 0 0 0 0.10979 1 13763 13763 22.658 6.8109 1 45157 4809 28476 28489 52012 52012 0.11630923719621933 TPITLPDL 8 Unmodified _TPITLPDL_ 0 0 0 REV__L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|207|2|anti-sense REV__L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|207|2|anti-sense MSMS UPN48_class_I_Rep_3 7 435.2505798339844 2 435.252569 868.490584 NaN NaN NaN NaN NaN NaN NaN 70.199 1 73.712 73.212 74.212 3.5128 0 0 0 0.40625 1 16228 16228 2.3027 0 1 + 45158 24838 28477 28490 52013 52013 0.05107864291653641 TPIVPKLWWV 10 Unmodified _TPIVPKLWWV_ 0 0 0 REV__AluJo_dup8661|chr2:68177636-68177921:+|1.048068550495648|0.14265371672091|2.88|151.0|1|1|sense REV__AluJo_dup8661|chr2:68177636-68177921:+|1.048068550495648|0.14265371672091|2.88|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 619.8690795898438 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 88.343 1 91.999 91.499 92.499 3.6563 0 0 0 0.53105 1 22093 22093 0.45834 0.057624 1 + 45159 17025 28478 28491 52014 52014 0.11296331713197105 TPKAQSVKQ 9 Unmodified _TPKAQSVKQ_ 0 0 0 L1MC1_dup7641|chr9:124635620-124636827:-|1.0496848912957495|0.0186059739302112|5.82|149.0|30|3|sense L1MC1_dup7641|chr9:124635620-124636827:-|1.0496848912957495|0.0186059739302112|5.82|149.0|30|3|sense L1MC1_dup7641|chr9:124635620-124636827:-|1.0496848912957495|0.0186059739302112|5.82|149.0|30|3|sense MSMS UPN47_class_I_Rep_2 3 493.7872314453125 2 493.785099 985.555644 NaN NaN NaN NaN NaN NaN NaN 109.29 1 112.82 112.32 113.32 3.5307 0 0 0 0.38784 1 26611 26611 3.5965 0 1 45160 11194 28479 28492 52015 52015 0.06228858817530636 TPKCLQLH 8 Unmodified _TPKCLQLH_ 0 0 0 REV__L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|124|1|anti-sense REV__L1MC2_dup3115|chr9:5792881-5795497:+|2.6599728524974044|0.093446886280489|4.83|151.0|124|1|anti-sense MSMS UPN48_class_I_Rep_1 5 470.2720947265625 2 470.257662 938.500772 NaN NaN NaN NaN NaN NaN NaN 83.081 1 86.668 86.168 87.168 3.5871 0 0 0 0.39996 1 19860 19860 7.9102 1.187 1 + 45161 26655 28480 28493 52016 52016 0.02906148745239534 TPKEKAQAL 9 Unmodified _TPKEKAQAL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|142|15.46|0.71|4.45|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS UPN47_class_I_Rep_1 2 493.2868957519531 2 493.287474 984.560395 -0.34792 -0.00017162 -0.41372 -0.00020408 -0.76164 -0.00037571 493.28716712292965 14.933 0.55087 18.408 18.26 18.811 3.475 136 64 3 0 0 0 0.11355 1 702 702 31.268 10.815 1 223890 45162 572 28481 28494 52017 52017 0.06749742960278127 TPKEKAQAL 9 Unmodified _TPKEKAQAL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|142|15.46|0.71|4.45|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 493.287474 984.560395 -0.11836 -5.8384E-05 -0.71904 -0.00035469 -0.8374 -0.00041308 493.2870377095508 15.022 0.54502 18.409 18.283 18.828 3.3864 -0.010907 -0.00022147 NaN 31.268 133 61 3 NaN NaN NaN NaN 0 NaN NaN 0 202900 45163 572 28481 28494 0.06749742960278127 TPKEKAQAL 9 Unmodified _TPKEKAQAL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|142|15.46|0.71|4.45|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 493.287474 984.560395 -0.64371 -0.00031753 -0.30163 -0.00014879 -0.94534 -0.00046633 493.2872093488921 15.076 0.49065 18.442 18.319 18.809 3.3659 0.021993 0.00019033 NaN 31.268 130 56 3 NaN NaN NaN NaN 0 NaN NaN 0 174740 45164 572 28481 28494 0.06749742960278127 TPKELKQIYLH 11 Unmodified _TPKELKQIYLH_ 0 0 0 REV__L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|98|3|sense REV__L1PA15_dup7622|chr17:5568994-5572435:+|1.1376791001130933|0.0552574595259616|4.36|149.0|98|3|sense MSMS UPN46_class_I_Rep_3 1 457.2629699707031 3 457.266122 1368.77654 NaN NaN NaN NaN NaN NaN NaN 77.717 1 77.717 77.217 78.217 0 0 0 0 0.38417 1 18178 18178 2.6312 1.3016 1 + 45165 29286 28482 28495 52018 52018 0.10689879074152486 TPKELLRE 8 Unmodified _TPKELLRE_ 0 0 0 MLT1A-int_dup298|chr10:1096680-1097351:+|1.5918702927983752|0.2419470338137564|2.72|151.0|4|1|sense MLT1A-int_dup298|chr10:1096680-1097351:+|1.5918702927983752|0.2419470338137564|2.72|151.0|4|1|sense MLT1A-int_dup298|chr10:1096680-1097351:+|1.5918702927983752|0.2419470338137564|2.72|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.2870788574219 2 493.287474 984.560395 -0.34792 -0.00017162 -0.41372 -0.00020408 -0.76164 -0.00037571 493.28716712292965 14.933 0.55087 18.408 18.26 18.811 3.475 136 64 3 0 0 0 0.82752 1 670 670 5.7319 0 1 223890 45166 16245 28483 28496 52019 52019 0.06749742960278127 TPKELLRE 8 Unmodified _TPKELLRE_ 0 0 0 MLT1A-int_dup298|chr10:1096680-1097351:+|1.5918702927983752|0.2419470338137564|2.72|151.0|4|1|sense MLT1A-int_dup298|chr10:1096680-1097351:+|1.5918702927983752|0.2419470338137564|2.72|151.0|4|1|sense MLT1A-int_dup298|chr10:1096680-1097351:+|1.5918702927983752|0.2419470338137564|2.72|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.286865234375 2 493.287474 984.560395 -0.64371 -0.00031753 -0.30163 -0.00014879 -0.94534 -0.00046633 493.2872093488921 15.076 0.49065 18.442 18.319 18.809 3.3659 130 56 3 0 0 0 0.82752 1 719 719 6.7232 0 1 174740 45167 16245 28483 28496 52020 52020 0.06749742960278127 TPKGRVVPVD 10 Unmodified _TPKGRVVPVD_ 0 0 0 REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF MSMS UPN46_class_I_Rep_3 1 534.31201171875 2 534.314023 1066.61349 NaN NaN NaN NaN NaN NaN NaN 59.447 1 59.447 58.947 59.947 0 0 0 0 0.53105 1 13142 13142 3.2813 0.97858 1 + 45168 18986 28484 28497 52021 52021 0.08285120742948493 TPKGRVVPVD 10 Unmodified _TPKGRVVPVD_ 0 0 0 REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF MSMS UPN46_class_I_Rep_3 1 534.3128662109375 2 534.314023 1066.61349 NaN NaN NaN NaN NaN NaN NaN 59.713 1 59.713 59.213 60.213 0 0 0 0 0.53105 1 13219 13219 6.2058 1.8765 1 + 45169 18986 28484 28497 52022 52022 0.08285120742948493 TPKHKLKNK 9 Unmodified _TPKHKLKNK_ 0 0 0 REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 547.68310546875 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 93.546 1 97.014 96.514 97.514 3.4687 0 0 0 0.39518 1 23081 23081 1.8442 0 1 + 45170 26110 28485 28498 52023 52023 0.13413106250823148 TPKHKLKNK 9 Unmodified _TPKHKLKNK_ 0 0 0 REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 547.3442993164062 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 99.085 1 102.57 102.07 103.07 3.4897 0 0 0 0.39518 1 24274 24274 1.8442 0 1 + 45171 26110 28485 28498 52024 52024 0.13413106250823148 TPKHKLKNK 9 Unmodified _TPKHKLKNK_ 0 0 0 REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 547.3327026367188 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 93.782 1 97.673 97.173 98.173 3.8914 0 0 0 0.39518 1 22232 22232 1.8442 0 1 + 45172 26110 28485 28498 52025 52025 0.13413106250823148 TPKHKLKNK 9 Unmodified _TPKHKLKNK_ 0 0 0 REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense REV__L1MB7_dup10029|chr8:73868801-73869143:+|1.0612468618655833|0.0017245704358796|9.27|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 547.345458984375 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 101.79 1 105.61 105.11 106.11 3.8153 0 0 0 0.39518 1 24063 24063 1.8442 0 1 + 45173 26110 28485 28498 52026 52026 0.13413106250823148 TPKHRKGFKP 10 Unmodified _TPKHRKGFKP_ 0 0 0 REV__L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|2|1|sense REV__L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 598.3585205078125 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 85.601 1 89.193 88.693 89.693 3.5914 0 0 0 0.53105 1 21377 21377 2.9952 0.26005 1 + 45174 27524 28486 28499 52027 52027 0.10899910999410167 TPKHRKGFKP 10 Unmodified _TPKHRKGFKP_ 0 0 0 REV__L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|2|1|sense REV__L1MDa_dup6162|chr18:21086494-21088211:+|1.1161389409275964|0.0087210211000659|7.0|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 598.358154296875 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 85.386 1 88.758 88.258 89.258 3.3716 0 0 0 0.53105 1 21395 21395 5.2969 0 1 + 45175 27524 28486 28499 52028 52028 0.10899910999410167 TPKILVLKG 9 Unmodified _TPKILVLKG_ 0 0 0 REV__L1ME3Cz_dup1180|chr2:55577854-55578446:+|1.2572150966064355|0.2553217237231363|2.3|151.0|22|3|sense REV__L1ME3Cz_dup1180|chr2:55577854-55578446:+|1.2572150966064355|0.2553217237231363|2.3|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 484.8399353027344 2 484.828778 967.643003 NaN NaN NaN NaN NaN NaN NaN 39.465 1 39.465 38.965 39.965 0 0 0 0 0.39518 1 7587 7587 1.8442 0 1 + 45176 28106 28487 28500 52029 52029 0.1578868475909303 TPKIPTTR 8 Unmodified _TPKIPTTR_ 0 0 0 REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367 REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367 MSMS UPN46_class_I_Rep_3 1 457.2765808105469 2 457.276909 912.539266 NaN NaN NaN NaN NaN NaN NaN 101.4 1 101.4 100.9 101.9 0 0 0 0 0.40625 1 24740 24740 2.3027 0 1 + 45177 20111 28488 28501 52030 52030 0.07949777651413115 TPKIRLLH 8 Unmodified _TPKIRLLH_ 0 0 0 REV__nc|ENSG00000150403|Q6UWJ1-3|TMCO3 REV__nc|ENSG00000150403|Q6UWJ1-3|TMCO3 MSMS UPN46_class_I_Rep_3 1 489.3138732910156 2 489.316369 976.618185 NaN NaN NaN NaN NaN NaN NaN 90.072 1 90.072 89.572 90.572 0 0 0 0 0.40625 1 21705 21705 2.3027 0 1 + 45178 19631 28489 28502 52031 52031 0.12894049676367558 TPKISKVTGT 10 Unmodified _TPKISKVTGT_ 0 0 0 REV__ENSG00000148843|ENST00000369797|PDCD11 REV__ENSG00000148843|ENST00000369797|PDCD11 MSMS UPN48_class_I_Rep_3 7 516.3101806640625 2 516.308406 1030.60226 NaN NaN NaN NaN NaN NaN NaN 96.443 1 100.35 99.851 100.85 3.9084 0 0 0 0.53105 1 22855 22855 2.9952 0 1 + 45179 19602 28490 28503 52032 52032 0.0881829864881638 TPKIYILLCAM 11 Unmodified _TPKIYILLCAM_ 0 0 0 REV__ENSG00000172461|ENST00000302103|FUT9 REV__ENSG00000172461|ENST00000302103|FUT9 MSMS UPN48_class_I_Rep_3 7 633.368896484375 2 633.353445 1264.69234 NaN NaN NaN NaN NaN NaN NaN 88.91 1 92.74 92.24 93.24 3.8293 0 0 0 0.38417 1 21098 21098 4.897 0.70751 1 + 45180 20449 28491 28504 52033 52033 0.07057888661370271 TPKKGRSIT 9 Unmodified _TPKKGRSIT_ 0 0 0 REV__ENSG00000100426|ENST00000216268|ZBED4 REV__ENSG00000100426|ENST00000216268|ZBED4 MULTI-MSMS UPN47_class_I_Rep_1 2 494.3009338378906 2 494.300916 986.587279 0.24113 0.00011919 0.020683 1.0224E-05 0.26182 0.00012942 494.3008653170786 88.268 1.2137 91.924 91.478 92.691 3.6563 464 150 4 0 0 0 0.43153 1 22149 22149 6.2058 6.2058 1 3704000 + 45181 18113 28492 28505 52034 52034 0.09344851571461277 TPKKGRSIT 9 Unmodified _TPKKGRSIT_ 0 0 0 REV__ENSG00000100426|ENST00000216268|ZBED4 REV__ENSG00000100426|ENST00000216268|ZBED4 MULTI-MSMS UPN47_class_I_Rep_2 3 494.3010559082031 2 494.300916 986.587279 0.40457 0.00019998 -0.05388 -2.6633E-05 0.35069 0.00017335 494.300823108099 88.339 1.09 91.786 91.345 92.435 3.4471 439 142 5 0 0 0 0.43153 3 21963 21963;22044;22099 6.2058 6.2058 1 4870300 + 45182 18113 28492 28505 52035;52036;52037 52035 0.09344851571461277 TPKKGRSIT 9 Unmodified _TPKKGRSIT_ 0 0 0 REV__ENSG00000100426|ENST00000216268|ZBED4 REV__ENSG00000100426|ENST00000216268|ZBED4 MULTI-MSMS UPN48_class_I_Rep_2 6 494.3009948730469 2 494.300916 986.587279 0.27388 0.00013538 0.20046 9.9087E-05 0.47434 0.00023446 494.3010680945897 88.004 1.1303 91.732 91.413 92.543 3.7279 530 144 5 0 0 0 0.43153 1 21032 21032 6.2058 6.2058 1 13562000 + 45183 18113 28492 28505 52038 52038 0.09344851571461277 TPKKGRSIT 9 Unmodified _TPKKGRSIT_ 0 0 0 REV__ENSG00000100426|ENST00000216268|ZBED4 REV__ENSG00000100426|ENST00000216268|ZBED4 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 494.300916 986.587279 0.30537 0.00015095 0.048366 2.3907E-05 0.35374 0.00017485 494.3010646381047 91.904 0.31955 91.904 91.865 92.185 0 0.033033 6.279E-05 NaN 6.2058 148 34 5 NaN NaN NaN NaN 0 NaN NaN 0 18419000 + 45184 18113 28492 28505 0.09344851571461277 TPKKKRIK 8 Unmodified _TPKKKRIK_ 0 0 0 ENSG00000006634|ENST00000265728|DBF4 ENSG00000006634|ENST00000265728|DBF4 ENSG00000006634|ENST00000265728|DBF4 MSMS UPN47_class_I_Rep_1 2 499.84564208984375 2 499.845294 997.676034 NaN NaN NaN NaN NaN NaN NaN 109.42 1 113.02 112.52 113.52 3.6046 0 0 0 0.40625 1 26991 26991 2.3027 0 1 45185 723 28493 28506 52039 52039 0.17710311601786088 TPKKKSTK 8 Unmodified _TPKKKSTK_ 0 0 0 REV__L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|13|1|sense REV__L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 459.2800598144531 2 459.292559 916.570566 NaN NaN NaN NaN NaN NaN NaN 112.62 1 112.62 112.12 113.12 0 0 0 0 0.40625 1 27809 27809 2.3027 0 1 + 45186 30133 28494 28507 52040 52040 0.10894350685509835 TPKKRIRHL 9 Unmodified _TPKKRIRHL_ 0 0 0 REV__L1PA10_dup6186|chr16:47701906-47703360:+|2.503148983573096|0.0247489831954171|6.66|151.0|42|3|sense REV__L1PA10_dup6186|chr16:47701906-47703360:+|2.503148983573096|0.0247489831954171|6.66|151.0|42|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 574.8704833984375 2 574.872374 1147.73019 0.50574 0.00029074 -1.7273 -0.000993 -1.2216 -0.00070226 575.3745618416357 108.49 0.1315 112.03 111.94 112.07 3.5382 24 12 3 0 0 0 0.48846 1 26559 26559 1.8442 0.36234 1 4646500 + 45187 28977 28495 28508 52041 52041 0.16223903753348168 TPKKVPLLKIL 11 Unmodified _TPKKVPLLKIL_ 0 0 0 REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|50|3|sense REV__L1M4_dup17905|chr17:5549581-5550853:-|1.444260094612166|0.0396233685225324|5.19|151.0|50|3|sense MSMS UPN47_class_I_Rep_3 4 625.4322509765625 2 625.433941 1248.85333 NaN NaN NaN NaN NaN NaN NaN 107.91 1 111.45 110.95 111.95 3.5382 0 0 0 0.38417 1 26365 26365 1.1933 0.79263 1 + 45188 24402 28496 28509 52042 52042 0.2388572236127402 TPKLRRSG 8 Unmodified _TPKLRRSG_ 0 0 0 REV__ENST00000267984.3_1_15:81293841-81294147:+|nuORF REV__ENST00000267984.3_1_15:81293841-81294147:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 457.7802429199219 2 457.780151 913.545748 0.057319 2.6239E-05 0.28968 0.00013261 0.347 0.00015885 457.7801551306024 81.234 0.72682 84.797 84.442 85.168 3.5624 139 88 2 0 0 0 0.82752 1 19363 19363 6.7232 0 1 252460 + 45189 21602 28497 28510 52043 52043 0.08551715602811782 TPKLRRSG 8 Unmodified _TPKLRRSG_ 0 0 0 REV__ENST00000267984.3_1_15:81293841-81294147:+|nuORF REV__ENST00000267984.3_1_15:81293841-81294147:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 457.780151 913.545748 0.20385 9.3318E-05 0.043572 1.9946E-05 0.24742 0.00011326 457.78008752166534 84.951 0.28548 84.951 84.741 85.026 0 0.13248 -0.00012711 NaN 6.7232 27 24 2 NaN NaN NaN NaN 0 NaN NaN 0 604380 + 45190 21602 28497 28510 0.08551715602811782 TPKLRRSG 8 Unmodified _TPKLRRSG_ 0 0 0 REV__ENST00000267984.3_1_15:81293841-81294147:+|nuORF REV__ENST00000267984.3_1_15:81293841-81294147:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 457.780151 913.545748 0.16864 7.72E-05 0.1386 6.3447E-05 0.30724 0.00014065 457.78004111579617 81.139 0.3366 84.796 84.77 85.106 3.6567 -0.022657 -4.011E-05 NaN 6.7232 55 42 2 NaN NaN NaN NaN 0 NaN NaN 0 206850 + 45191 21602 28497 28510 0.08551715602811782 TPKNIVKTKV 10 Unmodified _TPKNIVKTKV_ 0 0 0 ENST00000282841.9_1_1:235505746-235505809:+|nuORF ENST00000282841.9_1_1:235505746-235505809:+|nuORF ENST00000282841.9_1_1:235505746-235505809:+|nuORF MSMS UPN48_class_I_Rep_3 7 564.3792114257812 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 107.93 1 111.61 111.11 112.11 3.6813 0 0 0 0.53105 1 25494 25494 5.7319 0 1 45192 6035 28498 28511 52044 52044 0.14910839845219925 TPKPPDRIR 9 Unmodified _TPKPPDRIR_ 0 0 0 nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1 nc|ENSG00000135476|Q14674-2|ESPL1 nc|ENSG00000135476|Q14674-2|ESPL1 MSMS UPN48_class_I_Rep_1 5 539.985595703125 2 540.31964 1078.62473 NaN NaN NaN NaN NaN NaN NaN 98.427 1 102.03 101.53 102.53 3.6065 0 0 0 0.38639 1 23753 23753 3.9444 0 1 45193 2913 28499 28512 52045 52045 0.08855942837067232 TPKQNTAVR 9 Unmodified _TPKQNTAVR_ 0 0 0 REV__L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|31|2|sense REV__L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|31|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 507.2952575683594 2 507.788173 1013.56179 0.27437 0.00013932 0.049806 2.5291E-05 0.32418 0.00016461 508.289568304387 108.88 0.31409 112.55 112.43 112.75 3.6751 41 34 2 0 0 0 0.12099 1 25791 25791 3.5965 3.5965 1 4674300 + 45194 24161 28500 28513 52046 52046 0.05555377049040544 TPKQNTAVR 9 Unmodified _TPKQNTAVR_ 0 0 0 REV__L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|31|2|sense REV__L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|31|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.788173 1013.56179 0.31799 0.00016147 0.12087 6.1379E-05 0.43887 0.00022285 507.7881118937093 109 0.14057 112.54 112.5 112.64 3.5382 -0.031028 6.7608E-05 NaN 3.5965 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1755200 + 45195 24161 28500 28513 0.05555377049040544 TPKQNTAVR 9 Unmodified _TPKQNTAVR_ 0 0 0 REV__L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|31|2|sense REV__L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|31|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 507.788173 1013.56179 0.31195 0.00015841 -0.062792 -3.1885E-05 0.24916 0.00012652 507.78797992536994 108.94 0.15956 112.62 112.59 112.75 3.6746 0.048117 -0.00011892 NaN 3.5965 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2379900 + 45196 24161 28500 28513 0.05555377049040544 TPKRATLR 8 Unmodified _TPKRATLR_ 0 0 0 L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|89|3|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|89|3|sense L1MA3_dup3000|chr5:75482082-75485186:+|1.214473041425718|0.0148600092996999|6.35|151.0|89|3|sense MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 46.089 1 49.333 48.833 49.833 3.2441 0 0 0 0.40746 1 9828 9828 0.69038 0 1 45197 9515 28501 28514 52047 52047 0.1039228863688777 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MSMS UPN46_class_I_Rep_3 1 516.3142700195312 2 516.314692 1030.61483 0.32395 0.00016726 -1.2876 -0.00066479 -0.96362 -0.00049753 516.3136822673516 95.875 0.11227 95.875 95.81 95.922 0 17 14 2 0 0 0 0.82752 1 23303 23303 2.3027 0 1 69235 + 45198 17948 28502 28515 52048 52048 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-SECPEP UPN47_class_I_Rep_3 4 516.31396484375 2 516.314692 1030.61483 0.33836 0.0001747 -1.1427 -0.00059 -0.80436 -0.0004153 516.313919452404 91.061 0.33835 94.462 94.282 94.62 3.401 64 45 2 0 0 0 0.72333 1 22779 22779 2.3027 0 1 120620 + 45199 17948 28502 28515 52049 52049 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MSMS UPN48_class_I_Rep_2 6 516.314453125 2 516.314692 1030.61483 0.34638 0.00017884 -2.5837 -0.001334 -2.2373 -0.0011552 516.3131928555631 107.37 0.17728 111.05 110.88 111.06 3.6783 18 13 2 0 0 0 0.82752 1 25352 25352 4.756 0 1 1123900 + 45200 17948 28502 28515 52050 52050 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MSMS UPN48_class_I_Rep_3 7 516.3140258789062 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 96.657 1 100.56 100.06 101.06 3.9084 0 0 0 0.40625 1 22911 22911 2.3027 0 1 + 45201 17948 28502 28515 52051 52051 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 516.314692 1030.61483 0.32395 0.00016726 -1.2876 -0.00066479 -0.96362 -0.00049753 516.3136822673516 95.875 0.11227 95.875 95.81 95.922 0 -0.143 0.00045284 NaN 2.3027 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 69235 + 45202 17948 28502 28515 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 516.314692 1030.61483 0.26065 0.00013458 -0.80607 -0.00041618 -0.54541 -0.00028161 516.314123804931 92.705 0.039223 96.17 96.14 96.179 3.4652 0.15188 0.00095007 NaN 2.3027 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 49644 + 45203 17948 28502 28515 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 516.314692 1030.61483 0.27502 0.00014199 -3.2746 -0.0016907 -2.9996 -0.0015487 516.314799842877 107.57 0.031662 111.11 111.08 111.12 3.5345 -0.010395 -0.0019087 NaN 4.756 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 780710 + 45204 17948 28502 28515 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 516.314692 1030.61483 0.34718 0.00017925 -2.1424 -0.0011061 -1.7952 -0.00092688 516.8149572891908 92.246 0.035156 96.009 95.996 96.031 3.7629 -0.0088793 -0.00042983 NaN 2.3027 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 66191 + 45205 17948 28502 28515 0.10074799622339015 TPKRHKHK 8 Unmodified _TPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 516.314692 1030.61483 0.34736 0.00017934 -0.050983 -2.6323E-05 0.29637 0.00015302 516.3154053369178 107.52 0.18317 111.2 111.17 111.36 3.6813 0.080896 0.0014201 NaN 4.756 33 26 2 NaN NaN NaN NaN 0 NaN NaN 0 4398500 + 45206 17948 28502 28515 0.10074799622339015 TPKRISNK 8 Unmodified _TPKRISNK_ 0 0 0 HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 472.2878112792969 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 91.135 1 91.135 90.635 91.635 0 0 0 0 0.40625 1 21999 21999 2.3027 0 1 45207 7949 28503 28516 52052 52052 0.08748582399982752 TPKRISNK 8 Unmodified _TPKRISNK_ 0 0 0 HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.2876892089844 2 472.287808 942.561064 0.098737 4.6632E-05 -0.0080681 -3.8105E-06 0.090669 4.2822E-05 472.28773672819216 86.651 0.48625 90.264 90.187 90.673 3.613 112 65 2 0 0 0 0.82752 1 20754 20754 2.3027 0 1 726770 45208 7949 28503 28516 52053 52053 0.08748582399982752 TPKRISNK 8 Unmodified _TPKRISNK_ 0 0 0 HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense HAL1M8_dup565|chr4:139039220-139039726:-|1.9973596844156185|0.0651282361771553|4.94|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.28759765625 2 472.287808 942.561064 0.2273 0.00010735 -0.10844 -5.1214E-05 0.11886 5.6135E-05 472.2876650900646 86.845 0.41032 90.636 90.484 90.894 3.7905 83 58 2 0 0 0 0.82752 1 20595 20595 2.3027 0 1 245750 45209 7949 28503 28516 52054 52054 0.08748582399982752 TPKRNKQQLIG 11 Unmodified _TPKRNKQQLIG_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|17|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|17|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|17|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 641.882568359375 2 641.883136 1281.75172 0.50244 0.00032251 -0.89154 -0.00057227 -0.3891 -0.00024976 641.8825217306629 89.32 0.24918 92.713 92.65 92.9 3.3931 41 33 2 0 0 0 22.551 1 22415 22415 1.0715 0 1 121820 45210 12127 28504 28517 52055 52055 0.12211243991396259 TPKRNPTTI 9 Unmodified _TPKRNPTTI_ 0 0 0 L1MB7_dup9245|chr7:139099389-139099672:+|1.2117612063933096|0.0215797151063055|5.81|151.0|14|1|anti-sense L1MB7_dup9245|chr7:139099389-139099672:+|1.2117612063933096|0.0215797151063055|5.81|151.0|14|1|anti-sense L1MB7_dup9245|chr7:139099389-139099672:+|1.2117612063933096|0.0215797151063055|5.81|151.0|14|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 514.2986450195312 2 514.298373 1026.58219 0.32216 0.00016568 -0.12793 -6.5793E-05 0.19423 9.9891E-05 514.2981812147019 90.923 0.41157 90.923 90.762 91.174 0 62 38 2 0 0 0 0.47197 1 21964 21964 3.5965 0 1 518430 45211 10886 28505 28518 52056 52056 0.06996547708831713 TPKRRRWRQ 9 Unmodified _TPKRRRWRQ_ 0 0 0 ENST00000293604.10_1_6:30620706-30620838:+|nuORF ENST00000293604.10_1_6:30620706-30620838:+|nuORF ENST00000293604.10_1_6:30620706-30620838:+|nuORF MSMS UPN46_class_I_Rep_3 1 642.3849487304688 2 642.381429 1282.7483 NaN NaN NaN NaN NaN NaN NaN 92.565 1 92.565 92.065 93.065 0 0 0 0 0.39598 1 22404 22404 1.6526 0.17072 1 45212 6048 28506 28519 52057 52057 0.1182403872805935 TPKSKEKPLPA 11 Unmodified _TPKSKEKPLPA_ 0 0 0 Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 598.35546875 2 598.355888 1194.69722 0.41375 0.00024757 0.28659 0.00017148 0.70035 0.00041906 598.3561682020105 107.88 0.27499 111.51 111.44 111.72 3.6313 61 22 3 0 0 0 0.57992 1 26069 26069 5.7319 0.43497 1 12199000 45213 33456 28507 28520 52058 52058 0.10766232119999586 TPKSKEKPLPA 11 Unmodified _TPKSKEKPLPA_ 0 0 0 Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 598.355888 1194.69722 0.51817 0.00031005 1.2386 0.00074111 1.7567 0.0010512 598.3572403171622 107.88 0.28148 111.51 111.45 111.73 3.6355 0.027047 0.0011374 NaN 5.7319 28 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6498600 45214 33456 28507 28520 0.10766232119999586 TPKSKEKPLPA 11 Unmodified _TPKSKEKPLPA_ 0 0 0 Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 598.355888 1194.69722 0.63478 0.00037983 0.26269 0.00015718 0.89747 0.00053701 598.3561898966594 107.89 0.17156 111.42 111.37 111.54 3.5345 -0.06757 -3.0457E-05 NaN 5.7319 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 8448600 45215 33456 28507 28520 0.10766232119999586 TPKSKEKPLPA 11 Unmodified _TPKSKEKPLPA_ 0 0 0 Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 598.355888 1194.69722 0.50878 0.00030443 0.5531 0.00033095 1.0619 0.00063538 598.3563714717433 107.87 0.23494 111.41 111.36 111.59 3.5382 -0.078655 0.00031709 NaN 5.7319 55 25 3 NaN NaN NaN NaN 0 NaN NaN 0 6144000 45216 33456 28507 28520 0.10766232119999586 TPKSKEKPLPA 11 Unmodified _TPKSKEKPLPA_ 0 0 0 Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 598.355888 1194.69722 0.48577 0.00029066 0.28232 0.00016893 0.76808 0.00045959 598.3560288255704 107.85 0.13288 111.53 111.46 111.59 3.6783 0.040508 -6.9683E-06 NaN 5.7319 30 12 4 NaN NaN NaN NaN 0 NaN NaN 0 10058000 45217 33456 28507 28520 0.10766232119999586 TPKSKEKPLPA 11 Unmodified _TPKSKEKPLPA_ 0 0 0 Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense Tigger7_dup2926|chr19:12428123-12429054:+|1.229380512780164|0.2273806035663899|2.43|151.0|33|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 598.355888 1194.69722 0.5319 0.00031827 -0.0073013 -4.3688E-06 0.5246 0.0003139 598.3559062800035 107.86 0.17107 111.54 111.49 111.66 3.6813 0.052348 -0.00035356 NaN 5.7319 46 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8184400 45218 33456 28507 28520 0.10766232119999586 TPKTRKKE 8 Unmodified _TPKTRKKE_ 0 0 0 REV__L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|130|3|sense REV__L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|130|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 494.30096435546875 2 494.300916 986.587279 0.17755 8.7761E-05 0.20606 0.00010186 0.38361 0.00018962 494.30104474118247 88.071 1.4225 91.69 91.211 92.633 3.6187 525 165 5 0 0 0 0.82752 1 21259 21259 2.3027 0 1 12728000 + 45219 29689 28508 28521 52059 52059 0.09344851571472645 TPKTRKKE 8 Unmodified _TPKTRKKE_ 0 0 0 REV__L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|130|3|sense REV__L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|130|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.30096435546875 2 494.300916 986.587279 0.26627 0.00013162 0.14981 7.4051E-05 0.41608 0.00020567 494.3009957709923 87.976 1.3254 91.786 91.413 92.738 3.8104 471 168 5 0 0 0 0.82752 1 21028 21028 2.3027 0 1 10882000 + 45220 29689 28508 28521 52060 52060 0.09344851571472645 TPKTVRKN 8 Unmodified _TPKTVRKN_ 0 0 0 nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2 nc|ENSG00000177324|Q8NDZ0-2|BEND2 nc|ENSG00000177324|Q8NDZ0-2|BEND2 MULTI-MSMS UPN48_class_I_Rep_3 7 472.287841796875 2 472.287808 942.561064 0.22787 0.00010762 0.15512 7.3262E-05 0.38299 0.00018088 472.2877898455697 86.662 0.15392 90.452 90.404 90.558 3.7905 29 20 2 0 0 0 0.82752 1 20566 20566 2.3027 0 1 312170 45221 4786 28509 28522 52061 52061 0.0874858239999412 TPKTVRKN 8 Unmodified _TPKTVRKN_ 0 0 0 nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2 nc|ENSG00000177324|Q8NDZ0-2|BEND2 nc|ENSG00000177324|Q8NDZ0-2|BEND2 MULTI-MSMS UPN48_class_I_Rep_3 7 472.28778076171875 2 472.287808 942.561064 0.22611 0.00010679 0.012661 5.9796E-06 0.23877 0.00011277 472.28768706531383 87.442 0.15683 91.232 91.198 91.355 3.7905 40 18 3 0 0 0 0.82752 1 20750 20750 2.3027 0 1 2120000 45222 4786 28509 28522 52062 52062 0.0874858239999412 TPKVRKKRQG 10 Unmodified _TPKVRKKRQG_ 0 0 0 REV__ENST00000564629.1_1_16:31470269-31470434:-|nuORF REV__ENST00000564629.1_1_16:31470269-31470434:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 599.8814086914062 2 599.380563 1196.74657 0.63462 0.00038038 -0.82034 -0.0004917 -0.18572 -0.00011132 599.3801386160488 95.431 0.43913 98.906 98.686 99.125 3.4753 110 60 2 0 0 0 0.56333 1 23502 23502 1.4819 0 1 585460 + 45223 23054 28510 28523 52063 52063 0.15606984919440947 TPLARIVAF 9 Unmodified _TPLARIVAF_ 0 0 0 ENST00000532792.5_1_11:108009720-108014786:+|nuORF;ENSG00000075239|ENST00000265838|ACAT1 ENST00000532792.5_1_11:108009720-108014786:+|nuORF ENST00000532792.5_1_11:108009720-108014786:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 494.3037109375 2 494.302927 986.591301 0.16384 8.0989E-05 0.63397 0.00031337 0.79781 0.00039436 494.30338858218647 62.296 0.45207 65.664 65.448 65.9 3.3681 45 30 2 0 0 0 0.31407 1 14686 14686 13.042 3.6593 1 76448 45224 1142 28511 28524 52064 52064 0.09746941065168357 TPLESFRIE 9 Unmodified _TPLESFRIE_ 0 0 0 REV__ENSG00000131043|ENST00000320849|AAR2 REV__ENSG00000131043|ENST00000320849|AAR2 MSMS UPN48_class_I_Rep_1 5 546.2921142578125 2 546.290214 1090.56587 NaN NaN NaN NaN NaN NaN NaN 27.515 1 31.078 30.578 31.578 3.5629 0 0 0 0.39518 1 3553 3553 1.8442 0.36234 1 + 45225 18965 28512 28525 52065 52065 0.024214217521148385 TPLHCWCCC 9 Unmodified _TPLHCWCCC_ 0 0 0 L1PA15_dup8194|chr22:20832755-20833566:-|1.2977704223034174|0.0147860769120064|6.46|151.0|9|2|sense L1PA15_dup8194|chr22:20832755-20833566:-|1.2977704223034174|0.0147860769120064|6.46|151.0|9|2|sense L1PA15_dup8194|chr22:20832755-20833566:-|1.2977704223034174|0.0147860769120064|6.46|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 533.190673828125 2 533.192293 1064.37003 NaN NaN NaN NaN NaN NaN NaN 29.614 1 29.614 29.114 30.114 0 0 0 0 0.4007 1 4713 4713 0.52476 0.52476 1 45226 13994 28513 28526 52066 52066 -0.1595764956111907 TPLHSLHI 8 Unmodified _TPLHSLHI_ 0 0 0 REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|97|3|anti-sense REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 459.2630310058594 2 459.263802 916.513051 -0.3383 -0.00015537 -0.44951 -0.00020644 -0.78781 -0.00036181 459.2633075988599 37.431 0.85992 41.096 40.769 41.629 3.6652 139 62 3 0 0 0 0.82752 1 7141 7141 9.3474 0 1 229370 + 45227 27632 28514 28527 52067 52067 0.051455084799385986 TPLHSLHI 8 Unmodified _TPLHSLHI_ 0 0 0 REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|97|3|anti-sense REV__L1ME1_dup16375|chr9:66281664-66283086:-|1.4662615980301683|0.4393496619943793|1.74|150.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 459.26361083984375 2 459.263802 916.513051 -0.64847 -0.00029782 -0.58473 -0.00026855 -1.2332 -0.00056636 459.2632596880185 38.087 0.85192 41.329 40.966 41.818 3.2414 112 62 2 0 0 0 0.82752 1 7343 7343 9.3474 0 1 258250 + 45228 27632 28514 28527 52068 52068 0.051455084799385986 TPLKKFLL 8 Unmodified _TPLKKFLL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS UPN47_class_I_Rep_1 2 480.3182678222656 2 480.318046 958.621539 -0.078322 -3.7619E-05 0.48539 0.00023314 0.40707 0.00019552 480.3181489452788 47.754 0.81636 51.449 51.311 52.128 3.6951 82 49 2 0 0 0 0.82752 4 10237 10200;10237;10274;10277 28.487 5.3384 1 218340 45229 5349 28515 28528 52069;52070;52071;52072 52070 0.14057299730382056 TPLKKFLL 8 Unmodified _TPLKKFLL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS UPN47_class_I_Rep_2 3 480.3179016113281 2 480.318046 958.621539 0.10051 4.8276E-05 -0.085683 -4.1155E-05 0.014826 7.1212E-06 480.3178836359902 48.308 1.2612 51.657 51.344 52.606 3.3492 103 70 2 0 0 0 0.82752 1 10434 10434 25.399 4.9457 1 183190 45230 5349 28515 28528 52073 52073 0.14057299730382056 TPLKKFLL 8 Unmodified _TPLKKFLL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS UPN47_class_I_Rep_3 4 480.3182373046875 2 480.318046 958.621539 0.062333 2.994E-05 -0.065522 -3.1471E-05 -0.0031886 -1.5316E-06 480.3179524459602 48.817 1.0445 52.051 51.455 52.499 3.2345 76 55 2 0 0 0 0.82752 1 10519 10519 4.756 0 1 180440 45231 5349 28515 28528 52074 52074 0.14057299730382056 TPLKKVIL 8 Unmodified _TPLKKVIL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS UPN47_class_I_Rep_2 3 456.31805419921875 2 456.318046 910.621539 -0.48964 -0.00022343 0.23421 0.00010687 -0.25543 -0.00011656 456.3180397779822 36.468 0.88983 39.88 39.571 40.461 3.4114 112 66 2 0 0 0 0.82752 1 6922 6922 4.3292 0 1 119350 45232 4144 28516 28529 52075 52075 0.16265299730378047 TPLKKVIL 8 Unmodified _TPLKKVIL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS UPN47_class_I_Rep_3 4 456.3173522949219 2 456.318046 910.621539 -0.70085 -0.00031981 0.28444 0.0001298 -0.41641 -0.00019001 456.3180798474386 36.706 1.0318 39.953 39.577 40.608 3.247 116 72 2 0 0 0 0.82752 2 7007 7007;7049 7.9102 0 1 149520 45233 4144 28516 28529 52076;52077 52076 0.16265299730378047 TPLKLVEKLFQ 11 Unmodified _TPLKLVEKLFQ_ 0 0 0 REV__ENST00000473113.1_1_2:25817997-25830150:-|nuORF REV__ENST00000473113.1_1_2:25817997-25830150:-|nuORF MSMS UPN48_class_I_Rep_2 6 439.27117919921875 3 439.270984 1314.79112 NaN NaN NaN NaN NaN NaN NaN 35.434 1 39.121 38.621 39.621 3.6877 0 0 0 0.38417 1 5838 5838 1.2148 0.4383 1 + 45234 19264 28517 28530 52078 52078 0.14631951222258976 TPLQSKKLAEE 11 Unmodified _TPLQSKKLAEE_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000032840 REV__CON__ENSEMBL:ENSBTAP00000032840 MSMS UPN46_class_I_Rep_3 1 622.3480834960938 2 622.34826 1242.68197 NaN NaN NaN NaN NaN NaN NaN 38.752 1 38.752 38.252 39.252 0 0 0 0 0.38417 1 7399 7399 2.086 0.026257 1 + + 45235 17472 28518 28531 52079 52079 0.07033320532150356 TPLTGFSSFV 10 Unmodified _TPLTGFSSFV_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1;nc|ENSG00000146555|Q7Z5N4-2|SDK1;ENST00000466611.1_1_7:4266967-4305013:+|nuORF ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS UPN46_class_I_Rep_3 1 528.7755737304688 2 528.274032 1054.53351 0.31545 0.00016664 1.7214 0.00090935 2.0368 0.001076 528.7756470009456 79.428 0.043793 79.428 79.4 79.443 0 5 3 2 0 0 0 0.56078 1 18661 18661 3.2813 0 1 51877 45236 3440 28519 28532 52080 52080 0.008426343491009902 TPNGVLRIY 9 Unmodified _TPNGVLRIY_ 0 0 0 nc|ENSG00000158966|Q5VU97-2|CACHD1;ENSG00000158966|ENST00000651257|CACHD1 nc|ENSG00000158966|Q5VU97-2|CACHD1 nc|ENSG00000158966|Q5VU97-2|CACHD1 MSMS UPN47_class_I_Rep_2 3 516.8056640625 2 516.795466 1031.57638 NaN NaN NaN NaN NaN NaN NaN 72.95 1 76.247 75.747 76.747 3.2971 0 0 0 0.39518 1 17909 17909 1.8442 0 1 45237 3817 28520 28533 52081 52081 0.06185449197187154 TPNLQWIW 8 Unmodified _TPNLQWIW_ 0 0 0 ENST00000559567.1_15:82970936-82972253:+|nuORF ENST00000559567.1_15:82970936-82972253:+|nuORF ENST00000559567.1_15:82970936-82972253:+|nuORF MSMS UPN48_class_I_Rep_3 7 529.2769165039062 2 529.276909 1056.53927 NaN NaN NaN NaN NaN NaN NaN 30.231 1 33.946 33.446 34.446 3.7146 0 0 0 0.40738 1 4334 4334 0.79363 0 1 45238 7450 28521 28534 52082 52082 0.013257776514137731 TPNTTIYGK 9 Unmodified _TPNTTIYGK_ 0 0 0 REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|56|2|sense REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|56|2|sense MSMS UPN47_class_I_Rep_2 3 497.95172119140625 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 20.456 1 23.863 23.363 24.363 3.4074 0 0 0 0.39598 1 2126 2126 1.6526 0.32309 1 + 45239 29192 28522 28535 52083 52083 0.016094636892944436 TPPGTVETLSR 11 Unmodified _TPPGTVETLSR_ 0 0 0 REV__ENST00000581786.5_1_17:30349314-30355958:+|nuORF REV__ENST00000581786.5_1_17:30349314-30355958:+|nuORF MSMS UPN48_class_I_Rep_1 5 579.3147583007812 2 579.311677 1156.6088 NaN NaN NaN NaN NaN NaN NaN 33.157 1 36.677 36.177 37.177 3.5201 0 0 0 0.38417 1 5135 5135 0.96228 0.2719 1 + 45240 20597 28523 28536 52084 52084 0.03676191809518059 TPPLLKIV 8 Unmodified _TPPLLKIV_ 0 0 0 ENST00000381346.8_1_14:68144270-68144630:-|nuORF ENST00000381346.8_1_14:68144270-68144630:-|nuORF ENST00000381346.8_1_14:68144270-68144630:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 440.7994384765625 2 440.796946 879.57934 0.16165 7.1255E-05 2.053 0.00090497 2.2147 0.00097623 440.7993002243977 92.02 0.32329 92.02 91.878 92.201 0 48 35 2 0 0 0 0.72333 1 22235 22235 0.69038 0 1 88546 45241 6496 28524 28537 52085 52085 0.1347332432200119 TPPLLPQPQ 9 Unmodified _TPPLLPQPQ_ 0 0 0 REV__ENSG00000260220|ENST00000638797|CCDC187 REV__ENSG00000260220|ENST00000638797|CCDC187 MSMS UPN48_class_I_Rep_2 6 495.75341796875 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 36.743 1 40.445 39.945 40.945 3.7021 0 0 0 0.39518 1 6208 6208 1.8442 0 1 + 45242 21393 28525 28538 52086 52086 0.0593864444861083 TPPQWAGL 8 Unmodified _TPPQWAGL_ 0 0 0 L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|4|1|sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|4|1|sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 435.2281799316406 2 435.229428 868.444303 NaN NaN NaN NaN NaN NaN NaN 35.901 1 39.411 38.911 39.911 3.5101 0 0 0 0.40604 1 5932 5932 2.5775 0 1 45243 14678 28526 28539 52087 52087 0.00481844180239932 TPPRLADFLY 10 Unmodified _TPPRLADFLY_ 0 0 0 AluSx_dup71384|chr11:66632610-66632911:+|1.1600632510260431|0.2741407033602979|2.08|151.0|17|2|anti-sense AluSx_dup71384|chr11:66632610-66632911:+|1.1600632510260431|0.2741407033602979|2.08|151.0|17|2|anti-sense AluSx_dup71384|chr11:66632610-66632911:+|1.1600632510260431|0.2741407033602979|2.08|151.0|17|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 596.7672119140625 2 596.821681 1191.62881 0.28211 0.00016837 1.9881 0.0011865 2.2702 0.0013549 596.8234111046617 51.124 0.12512 54.718 54.681 54.806 3.5933 6 5 2 0 0 0 0.84575 1 11281 11281 3.5965 1.5367 1 55926 45244 296 28527 28540 52088 52088 0.04065987540138849 TPPRRFFY 8 Unmodified _TPPRRFFY_ 0 0 0 ENST00000592618.5_1_19:1010351-1011343:-|nuORF ENST00000592618.5_1_19:1010351-1011343:-|nuORF ENST00000592618.5_1_19:1010351-1011343:-|nuORF MSMS UPN47_class_I_Rep_1 2 542.2889404296875 2 542.290351 1082.56615 NaN NaN NaN NaN NaN NaN NaN 54.034 1 57.562 57.062 58.062 3.5278 0 0 0 0.40292 1 12156 12156 6.7232 0.36906 1 45245 7633 28528 28541 52089 52089 0.02816886262621665 TPPTVPAFY 9 Unmodified _TPPTVPAFY_ 0 0 0 REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF MSMS UPN48_class_I_Rep_2 6 496.7550964355469 2 496.758018 991.501483 NaN NaN NaN NaN NaN NaN NaN 36.345 1 40.033 39.533 40.533 3.6877 0 0 0 0.35339 1 6099 6099 7.9102 2.1497 1 + 45246 19714 28529 28542 52090 52090 0.005392666659417955 TPPVKILI 8 Unmodified _TPPVKILI_ 0 0 0 REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|83|3|sense REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|83|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29766845703125 2 440.796946 879.57934 0.16047 7.0734E-05 4.2519 0.0018742 4.4124 0.001945 440.7994030423765 112.06 0.33574 115.63 115.42 115.76 3.572 59 36 2 0 0 0 0.82752 1 27624 27624 0.69038 0 1 202420 + 45247 30415 28530 28543 52091 52091 0.1347332432201256 TPPVKILI 8 Unmodified _TPPVKILI_ 0 0 0 REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|83|3|sense REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|83|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.29766845703125 2 440.796946 879.57934 -0.29274 -0.00012904 3.0611 0.0013493 2.7683 0.0012203 440.7994204552883 89.643 0.3349 93.04 92.891 93.226 3.3976 58 41 2 0 0 0 0.82752 1 22518 22518 0.69038 0 1 138130 + 45248 30415 28530 28543 52092 52092 0.1347332432201256 TPPWQPQK 8 Unmodified _TPPWQPQK_ 0 0 0 REV__chr11:60056740-60061146|139|79.73|0.47|7.42|+|1|MS4A3,MS4A3|1 REV__chr11:60056740-60061146|139|79.73|0.47|7.42|+|1|MS4A3,MS4A3|1 MSMS UPN47_class_I_Rep_2 3 491.26171875 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 58.454 1 61.735 61.235 62.235 3.2818 0 0 0 0.40746 1 13533 13533 0.69038 0 1 + 45249 17425 28531 28544 52093 52093 0.016932046173337767 TPQGGALLHRK 11 Unmodified _TPQGGALLHRK_ 0 0 0 REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|73|2|sense REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|73|2|sense MSMS UPN48_class_I_Rep_2 6 589.3446655273438 2 589.343646 1176.67274 NaN NaN NaN NaN NaN NaN NaN 86.855 1 90.572 90.072 91.072 3.7171 0 0 0 0.38417 1 20668 20668 1.0715 0.5467 1 + 45250 30378 28532 28545 52094 52094 0.09147016757128767 TPRASSSTF 9 Unmodified _TPRASSSTF_ 0 0 0 REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14 REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14 MULTI-MSMS UPN47_class_I_Rep_1 2 477.23797607421875 2 477.237981 952.461409 -0.30816 -0.00014706 -0.1285 -6.1323E-05 -0.43665 -0.00020839 477.2378863152738 35.086 0.60953 38.772 38.541 39.15 3.6859 85 44 3 0 0 0 0.13244 1 6357 6357 27.629 2.2295 1 163850 + 45251 19362 28533 28546 52095 52095 -0.016722800046181874 TPRASSSTF 9 Unmodified _TPRASSSTF_ 0 0 0 REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14 REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14 MULTI-MSMS UPN47_class_I_Rep_3 4 477.2375183105469 2 477.237981 952.461409 -0.49263 -0.0002351 0.0046547 2.2214E-06 -0.48798 -0.00023288 477.2378601668699 35.506 0.70142 38.76 38.495 39.197 3.2547 78 47 2 0 0 0 0.19147 1 6543 6543 21.537 2.28 1 147310 + 45252 19362 28533 28546 52096 52096 -0.016722800046181874 TPRCIRHF 8 Unmodified _TPRCIRHF_ 0 0 0 nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12 nc|ENSG00000174844|Q6ZR08|DNAH12 nc|ENSG00000174844|Q6ZR08|DNAH12 MSMS UPN47_class_I_Rep_2 3 515.2728881835938 2 515.274178 1028.5338 NaN NaN NaN NaN NaN NaN NaN 64.49 1 67.745 67.245 68.245 3.2556 0 0 0 0.40472 1 15366 15366 4.3292 0.73274 1 45253 4695 28534 28547 52097 52097 0.02067775587943288 TPREEQPQNT 10 Unmodified _TPREEQPQNT_ 0 0 0 L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|150|3|sense;L1P2_dup52|chr1:120457738-120458799:-|2.5911196051920515|0.1308012316252706|4.31|150.0|18|2|sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|150|3|sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|150|3|sense MSMS UPN48_class_I_Rep_1 5 600.2837524414062 2 600.286191 1198.55783 NaN NaN NaN NaN NaN NaN NaN 59.624 1 63.104 62.604 63.604 3.4801 0 0 0 0.53105 1 13117 13117 1.1933 0.23107 1 45254 13499 28535 28548 52098 52098 -0.03350757235330093 TPRHLKTL 8 Unmodified _TPRHLKTL_ 0 0 0 REV__HERVL74-int_dup317|chr19:9426684-9427318:+|1.8249835921942203|0.163348777158164|3.48|151.0|11|2|sense REV__HERVL74-int_dup317|chr19:9426684-9427318:+|1.8249835921942203|0.163348777158164|3.48|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 483.2992248535156 2 483.298176 964.581799 NaN NaN NaN NaN NaN NaN NaN 20.442 1 24.108 23.608 24.608 3.6667 0 0 0 0.40753 1 1738 1738 0.6015 0 1 + 45255 23925 28536 28549 52099 52099 0.09809172779660003 TPRLRMKVL 9 Unmodified _TPRLRMKVL_ 0 0 0 REV__MER41B_dup2289|chr16:12141358-12141998:-|1.066128676378838|0.0075325450127545|7.15|151.0|18|3|sense REV__MER41B_dup2289|chr16:12141358-12141998:-|1.066128676378838|0.0075325450127545|7.15|151.0|18|3|sense MSMS UPN48_class_I_Rep_2 6 557.3509521484375 2 557.349886 1112.68522 NaN NaN NaN NaN NaN NaN NaN 78.249 1 81.871 81.371 82.371 3.6222 0 0 0 0.4007 1 18558 18558 0.52476 0 1 + 45256 31306 28537 28550 52100 52100 0.13338336895822067 TPRLSLKR 8 Unmodified _TPRLSLKR_ 0 0 0 REV__ENST00000536245.1_1_6:144098468-144110182:+|nuORF REV__ENST00000536245.1_1_6:144098468-144110182:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 93.769 1 97.238 96.738 97.738 3.4687 0 0 0 0.40625 1 23131 23131 2.3027 0 1 + 45257 18484 28538 28551 52101 52101 0.12232861670997863 TPRLSLKR 8 Unmodified _TPRLSLKR_ 0 0 0 REV__ENST00000536245.1_1_6:144098468-144110182:+|nuORF REV__ENST00000536245.1_1_6:144098468-144110182:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.3417053222656 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 101.52 1 105.04 104.54 105.54 3.5151 0 0 0 0.40625 1 24765 24765 2.3027 0 1 + 45258 18484 28538 28551 52102 52102 0.12232861670997863 TPRLSLKR 8 Unmodified _TPRLSLKR_ 0 0 0 REV__ENST00000536245.1_1_6:144098468-144110182:+|nuORF REV__ENST00000536245.1_1_6:144098468-144110182:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 113.89 1 117.54 117.04 118.04 3.6511 0 0 0 0.40659 1 27098 27098 1.8442 0 1 + 45259 18484 28538 28551 52103 52103 0.12232861670997863 TPRYFIAI 8 Unmodified _TPRYFIAI_ 0 0 0 L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|166|3|anti-sense L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|166|3|anti-sense L1MA4_dup6846|chr10:72776185-72778538:+|1.3843225141129891|0.0250657131073966|5.79|151.0|166|3|anti-sense MSMS UPN48_class_I_Rep_1 5 490.78045654296875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.66 117.16 118.16 3.6301 0 0 0 0.40738 1 27713 27713 0.79363 0 1 45260 9719 28539 28552 52104 52104 0.05850965656793505 TPSEQLALPE 10 Unmodified _TPSEQLALPE_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MULTI-MSMS UPN47_class_I_Rep_2 3 542.77978515625 2 542.779679 1083.5448 0.0091467 4.9647E-06 -0.1326 -7.1973E-05 -0.12345 -6.7008E-05 542.7796771039809 27.627 0.55355 31.126 30.859 31.412 3.4986 71 42 2 0 0 0 0.54822 1 4232 4232 5.7319 5.7319 1 98954 + 45261 19557 28540 28553 52105 52105 0.0063741165256487875 TPSKLVGSIA 10 Unmodified _TPSKLVGSIA_ 0 0 0 REV__L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|266|2|anti-sense REV__L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|266|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.7895812988281 2 486.78985 971.565146 0.23349 0.00011366 0.54125 0.00026347 0.77473 0.00037713 486.78998407785207 35.097 1.0992 38.771 38.301 39.4 3.6735 136 105 2 0 0 0 0.53004 1 5823 5823 8.1555 0 1 96842 + 45262 30426 28541 28554 52106 52106 0.07822627103053037 TPSKLVPMV 9 Unmodified _TPSKLVPMV_ 0 0 0 REV__ENSG00000135222|ENST00000353151|CSN2 REV__ENSG00000135222|ENST00000353151|CSN2 MSMS UPN48_class_I_Rep_1 5 486.2850646972656 2 486.283346 970.552139 NaN NaN NaN NaN NaN NaN NaN 35.758 1 39.268 38.768 39.768 3.5101 0 0 0 0.35339 1 5891 5891 7.9102 0 1 + 45263 19126 28542 28555 52107 52107 0.06568472719311558 TPSKLVPMV 9 Unmodified _TPSKLVPMV_ 0 0 0 REV__ENSG00000135222|ENST00000353151|CSN2 REV__ENSG00000135222|ENST00000353151|CSN2 MSMS UPN48_class_I_Rep_2 6 486.2854919433594 2 486.283346 970.552139 NaN NaN NaN NaN NaN NaN NaN 35.677 1 39.365 38.865 39.865 3.6877 0 0 0 0.39326 1 5912 5912 2.3027 0 1 + 45264 19126 28542 28555 52108 52108 0.06568472719311558 TPSLLHTVE 9 Unmodified _TPSLLHTVE_ 0 0 0 REV__HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|146|3|sense REV__HERV9NC-int_dup215|chr13:27213119-27219588:+|2.329024660323624|0.3443883537279302|2.76|150.0|146|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 498.29229736328125 2 498.771657 995.528761 0.21074 0.00010511 0.50582 0.00025229 0.71657 0.0003574 498.77164691983165 53.161 0.28248 56.68 56.598 56.881 3.5192 24 18 2 0 0 0 0.11021 1 11129 11129 14.838 1.3304 1 80873 + 45265 23623 28543 28556 52109 52109 0.030817502063200664 TPSLQKKDTK 10 Unmodified _TPSLQKKDTK_ 0 0 0 AluJb_dup76502|chr11:14650202-14650462:-|1.1185108817227272|0.3095650132647074|1.85|151.0|7|3|sense AluJb_dup76502|chr11:14650202-14650462:-|1.1185108817227272|0.3095650132647074|1.85|151.0|7|3|sense AluJb_dup76502|chr11:14650202-14650462:-|1.1185108817227272|0.3095650132647074|1.85|151.0|7|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.3304443359375 2 573.32987 1144.64519 0.41017 0.00023516 -0.28407 -0.00016287 0.12609 7.2294E-05 573.3296223329116 88.136 0.54503 91.759 91.507 92.052 3.6229 91 61 2 0 0 0 0.56374 1 21115 21115 1.1933 0 1 170910 45266 64 28544 28557 52110 52110 0.0786506870622361 TPSLVLRGL 9 Unmodified _TPSLVLRGL_ 0 0 0 REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|269|2|anti-sense REV__L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|269|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 478.80169677734375 2 478.300384 954.586216 0.061956 2.9634E-05 0.3635 0.00017386 0.42545 0.00020349 478.3005619076289 68.389 0.51582 71.587 71.234 71.75 3.1977 47 32 2 0 0 0 0.43153 2 16547 16547;16592 6.2058 0 1 116300 + 45267 24271 28545 28558 52111;52112 52111 0.10710637202578255 TPSPNSRL 8 Unmodified _TPSPNSRL_ 0 0 0 nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT nc|ENSG00000160299|O95613-2|PCNT nc|ENSG00000160299|O95613-2|PCNT MSMS UPN47_class_I_Rep_1 2 436.2365417480469 2 436.235242 870.45593 NaN NaN NaN NaN NaN NaN NaN 101.1 1 104.89 104.39 105.39 3.7942 0 0 0 0.40746 1 24957 24957 0.69038 0 1 45268 3867 28546 28559 52113 52113 0.015520412035812114 TPSSQPQIP 9 Unmodified _TPSSQPQIP_ 0 0 0 L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|92|2|sense L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|92|2|sense L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|92|2|sense MSMS UPN48_class_I_Rep_1 5 477.75030517578125 2 477.748182 953.481811 NaN NaN NaN NaN NaN NaN NaN 37.974 1 41.479 40.979 41.979 3.5052 0 0 0 0.38916 1 6519 6519 3.2813 0.97858 1 45269 14737 28547 28560 52114 52114 0.0032089065517766358 TPSSQTDGPLY 11 Unmodified _TPSSQTDGPLY_ 0 0 0 REV__L1MC5a_dup2815|chr3:11548514-11549046:-|1.1858581670150783|0.1386590330256157|3.1|151.0|1|1|sense REV__L1MC5a_dup2815|chr3:11548514-11549046:-|1.1858581670150783|0.1386590330256157|3.1|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 583.2728271484375 2 583.272218 1164.52988 NaN NaN NaN NaN NaN NaN NaN 45.105 1 48.349 47.849 48.849 3.2441 0 0 0 0.38417 1 9524 9524 2.086 0.24177 1 + 45270 27150 28548 28561 52115 52115 -0.04580080215419002 TPSTRLVTL 9 Unmodified _TPSTRLVTL_ 0 0 0 L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|18|1|sense L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|18|1|sense L1MA3_dup6470|chr11:74215353-74217259:+|2.615878708879251|0.0469157398339156|5.8|151.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 494.29534912109375 2 494.295299 986.576045 NaN NaN NaN NaN NaN NaN NaN 60.977 1 64.243 63.743 64.743 3.2654 0 0 0 0.27207 1 14301 14301 12.241 0 1 45271 9602 28549 28562 52116 52116 0.08222029477337855 TPTAPDNTDV 10 Unmodified _TPTAPDNTDV_ 0 0 0 ENST00000503958.1_1_5:24487774-24493064:-|nuORF;ENSG00000040731|ENST00000264463|CDH10 ENST00000503958.1_1_5:24487774-24493064:-|nuORF ENST00000503958.1_1_5:24487774-24493064:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 515.738037109375 2 515.738011 1029.46147 0.2254 0.00011625 -0.28191 -0.00014539 -0.056517 -2.9148E-05 515.7381091248391 21.668 0.049789 25.383 25.361 25.41 3.7144 7 5 2 0 0 0 0.56543 1 2082 2082 0 0 1 36270 45272 866 28550 28563 52117 52117 -0.05208324795307817 TPTAPDNTDV 10 Unmodified _TPTAPDNTDV_ 0 0 0 ENST00000503958.1_1_5:24487774-24493064:-|nuORF;ENSG00000040731|ENST00000264463|CDH10 ENST00000503958.1_1_5:24487774-24493064:-|nuORF ENST00000503958.1_1_5:24487774-24493064:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 515.738011 1029.46147 -0.30762 -0.00015865 0.022931 1.1826E-05 -0.28469 -0.00014683 515.739042330621 21.908 0.035538 25.332 25.318 25.354 3.4241 -0.025202 0.00028661 NaN 0 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 18889 45273 866 28550 28563 -0.05208324795307817 TPTPPSAEVA 10 Unmodified _TPTPPSAEVA_ 0 0 0 MamGypLTR1d_dup446|chrX:30554348-30554789:-|1.0788336294175884|0.0945347249852357|3.51|151.0|9|2|sense MamGypLTR1d_dup446|chrX:30554348-30554789:-|1.0788336294175884|0.0945347249852357|3.51|151.0|9|2|sense MamGypLTR1d_dup446|chrX:30554348-30554789:-|1.0788336294175884|0.0945347249852357|3.51|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 485.2763671875 2 485.248015 968.481476 NaN NaN NaN NaN NaN NaN NaN 33.288 1 36.808 36.308 37.308 3.5201 0 0 0 0.53105 1 5173 5173 1.4819 0 1 45274 15736 28551 28564 52118 52118 -0.004025290646723079 TPTSDELEQF 10 Unmodified _TPTSDELEQF_ 0 0 0 nc|ENSG00000196767|P49335|POU3F4;ENSG00000196767|ENST00000644024|POU3F4 nc|ENSG00000196767|P49335|POU3F4 nc|ENSG00000196767|P49335|POU3F4 MSMS UPN47_class_I_Rep_3 4 583.7640991210938 2 583.764226 1165.5139 NaN NaN NaN NaN NaN NaN NaN 45.302 1 48.546 48.046 49.046 3.2441 0 0 0 0.53105 1 9585 9585 8.1555 0.24537 1 45275 5330 28552 28565 52119 52119 -0.062237864523240205 TPTSSRLHW 9 Unmodified _TPTSSRLHW_ 0 0 0 REV__nc|ENSG00000131652|Q86W42-3|THOC6 REV__nc|ENSG00000131652|Q86W42-3|THOC6 MULTI-MSMS UPN47_class_I_Rep_1 2 542.7797241210938 2 542.780348 1083.54614 -0.038762 -2.1039E-05 -1.3638 -0.00074025 -1.4026 -0.00076129 542.7796973597458 27.485 0.52516 31.252 30.981 31.506 3.7662 82 40 3 0 0 0 0.47197 1 4123 4123 3.5965 3.5965 1 118210 + 45276 18982 28553 28566 52120 52120 0.0077109053199819755 TPVISMFWE 9 Unmodified _TPVISMFWE_ 0 0 0 AluSz_dup53308|chrX:56756683-56756981:+|1.2291703599264172|0.0108288209411801|6.83|151.0|1|1|sense AluSz_dup53308|chrX:56756683-56756981:+|1.2291703599264172|0.0108288209411801|6.83|151.0|1|1|sense AluSz_dup53308|chrX:56756683-56756981:+|1.2291703599264172|0.0108288209411801|6.83|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 555.7576904296875 2 555.270435 1108.52632 -0.1767 -9.8115E-05 -0.31286 -0.00017372 -0.48956 -0.00027184 555.2702589927196 14.829 0.4935 14.829 14.673 15.166 0 113 60 3 0 0 0 0.50088 1 691 691 0.52476 0 1 110020 45277 352 28554 28567 52121 52121 -0.023604215229852343 TPVIVHWL 8 Unmodified _TPVIVHWL_ 0 0 0 ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|54|3|sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|54|3|sense ERVL-B4-int_dup3422|chr15:30865309-30867381:-|6.241071931211872|0.0106317404110223|9.2|151.0|54|3|sense MSMS UPN48_class_I_Rep_3 7 482.7945556640625 2 482.78437 963.554188 NaN NaN NaN NaN NaN NaN NaN 35.337 1 39.009 38.509 39.509 3.6721 0 0 0 0.40581 1 5718 5718 2.8892 0 1 45278 7733 28555 28568 52122 52122 0.07095269519413705 TPVPISSGEVY 11 Unmodified _TPVPISSGEVY_ 0 0 0 REV__ENSG00000136960|ENST00000075322|ENPP2 REV__ENSG00000136960|ENST00000075322|ENPP2 MULTI-SECPEP UPN48_class_I_Rep_2 6 574.2947387695312 2 574.795329 1147.5761 0.47525 0.00027317 1.2143 0.00069799 1.6896 0.00097116 574.7960778604647 77.175 0.15975 80.787 80.732 80.892 3.6116 22 16 2 0 0 0 22.551 1 18247 18247 5.7319 1.4026 1 265350 + 45279 19208 28556 28569 52123 52123 0.008219846866722946 TPVRMLII 8 Unmodified _TPVRMLII_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense MSMS UPN47_class_I_Rep_2 3 471.795166015625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 27.185 1 30.684 30.184 31.184 3.4986 0 0 0 0.40738 1 4044 4044 0.79363 0 1 45280 14745 28557 28570 52124 52124 0.10008482818830089 TPVRMLII 8 Unmodified _TPVRMLII_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense MSMS UPN47_class_I_Rep_2 3 471.7952880859375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 29.102 1 32.595 32.095 33.095 3.4923 0 0 0 0.40738 1 4613 4613 0.79363 0 1 45281 14745 28557 28570 52125 52125 0.10008482818830089 TPVRMLII 8 Unmodified _TPVRMLII_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense MSMS UPN47_class_I_Rep_2 3 471.77764892578125 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 90.368 1 93.825 93.325 94.325 3.4571 0 0 0 0.40404 1 22423 22423 5.2307 0 1 45282 14745 28557 28570 52126 52126 0.10008482818830089 TPVRMLII 8 Unmodified _TPVRMLII_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense MSMS UPN47_class_I_Rep_3 4 471.7958984375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 90.286 1 93.683 93.183 94.183 3.3976 0 0 0 0.39624 1 22629 22629 9.3474 0 1 45283 14745 28557 28570 52127 52127 0.10008482818830089 TPVRMLII 8 Unmodified _TPVRMLII_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense MSMS UPN47_class_I_Rep_3 4 471.7966003417969 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 90.455 1 93.852 93.352 94.352 3.3976 0 0 0 0.40404 1 22669 22669 5.2307 0 1 45284 14745 28557 28570 52128 52128 0.10008482818830089 TPVRMLII 8 Unmodified _TPVRMLII_ 0 0 0 L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense L1PA7_dup12045|chr16:80785135-80787080:+|1.2083548439269427|0.0221310266818506|5.77|149.0|58|3|sense MSMS UPN47_class_I_Rep_3 4 471.79608154296875 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 91.334 1 94.735 94.235 95.235 3.401 0 0 0 0.40404 1 22848 22848 5.2307 0 1 45285 14745 28557 28570 52129 52129 0.10008482818830089 TPVRTKNYI 9 Unmodified _TPVRTKNYI_ 0 0 0 REV__L1M1_dup3189|chr5:143380818-143382228:+|1.9736080063333308|0.0761824135311785|4.7|151.0|26|3|sense REV__L1M1_dup3189|chr5:143380818-143382228:+|1.9736080063333308|0.0761824135311785|4.7|151.0|26|3|sense MSMS UPN48_class_I_Rep_2 6 546.314697265625 2 546.314023 1090.61349 NaN NaN NaN NaN NaN NaN NaN 54.161 1 57.743 57.243 58.243 3.5817 0 0 0 0.3824 1 11421 11421 4.897 0 1 + 45286 24075 28558 28571 52130 52130 0.07181120742939129 TPWGFTLILE 10 Unmodified _TPWGFTLILE_ 0 0 0 ENST00000512390.1_1_5:141033519-141041645:-|nuORF;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENSG00000120318|ENST00000239440|ARAP3 ENST00000512390.1_1_5:141033519-141041645:-|nuORF ENST00000512390.1_1_5:141033519-141041645:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 588.8169555664062 2 588.818607 1175.62266 -0.078723 -4.6353E-05 -0.49752 -0.00029295 -0.57625 -0.0003393 588.8183210883151 36.89 0.84082 40.137 39.727 40.568 3.247 101 60 2 0 0 0 0.56333 2 7120 7120;7143 1.4819 0.15237 1 106240 45287 2319 28559 28572 52131;52132 52131 0.0418746930861289 TQAAPSVAGY 10 Unmodified _TQAAPSVAGY_ 0 0 0 REV__ERVL-B4-int_dup2714|chr11:2293349-2294350:-|1.1623494103692027|0.0848533418190992|3.78|151.0|12|2|sense REV__ERVL-B4-int_dup2714|chr11:2293349-2294350:-|1.1623494103692027|0.0848533418190992|3.78|151.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 483.6466064453125 2 482.740357 963.46616 0.12517 6.0423E-05 -0.28985 -0.00013992 -0.16469 -7.9501E-05 482.74008738295754 99.832 0.39049 103.44 103.34 103.73 3.6065 103 46 3 0 0 0 0.56033 1 24099 24099 3.5965 1.019 1 865600 + 45288 23258 28560 28573 52133 52133 -0.017033958618526412 TQAQAQKEL 9 Unmodified _TQAQAQKEL_ 0 0 0 REV__L1PB_dup6|chr1:20957232-20959655:+|1.3598297911510646|0.049258224897031|4.79|151.0|31|2|sense REV__L1PB_dup6|chr1:20957232-20959655:+|1.3598297911510646|0.049258224897031|4.79|151.0|31|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 508.75762939453125 2 508.772188 1015.52982 -0.088656 -4.5106E-05 -0.018716 -9.5222E-06 -0.10737 -5.4628E-05 508.77203137331423 45.06 0.4431 48.415 48.173 48.616 3.3556 39 24 2 0 0 0 0.43153 1 9394 9394 6.2058 0.44535 1 77969 + 45289 30289 28561 28574 52134 52134 0.022679645752418764 TQAQAQKEL 9 Unmodified _TQAQAQKEL_ 0 0 0 REV__L1PB_dup6|chr1:20957232-20959655:+|1.3598297911510646|0.049258224897031|4.79|151.0|31|2|sense REV__L1PB_dup6|chr1:20957232-20959655:+|1.3598297911510646|0.049258224897031|4.79|151.0|31|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 508.772188 1015.52982 -0.066712 -3.3941E-05 0.001064 5.4135E-07 -0.065648 -3.34E-05 508.7721400031633 44.644 0.54093 48.344 48.152 48.693 3.6999 -0.026461 1.6654E-06 NaN 6.2058 63 38 2 NaN NaN NaN NaN 0 NaN NaN 0 93629 + 45290 30289 28561 28574 0.022679645752418764 TQAQTTATY 9 Unmodified _TQAQTTATY_ 0 0 0 ENST00000485037.5_1_22:29664325-29670342:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1 ENST00000485037.5_1_22:29664325-29670342:+|nuORF ENST00000485037.5_1_22:29664325-29670342:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 492.73468017578125 2 492.735271 983.45599 -0.018723 -9.2257E-06 0.58085 0.0002862 0.56212 0.00027698 492.73562318005156 27.286 0.48133 27.286 27.071 27.552 0 60 39 2 0 0 0 0.10225 3 4074 4024;4074;4104 33.445 7.1768 1 78029 45291 4976 28562 28575 52135;52136;52137 52136 -0.036400035870883585 TQARPRAL 8 Unmodified _TQARPRAL_ 0 0 0 ENST00000322153.11_1_19:18193047-18194253:-|nuORF ENST00000322153.11_1_19:18193047-18194253:-|nuORF ENST00000322153.11_1_19:18193047-18194253:-|nuORF MSMS UPN46_class_I_Rep_3 1 456.7723693847656 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 86.898 1 86.898 86.398 87.398 0 0 0 0 0.40746 1 20793 20793 0.69038 0 1 45292 6155 28563 28576 52138 52138 0.07079429085752054 TQARRRRRKFP 11 Unmodified _TQARRRRRKFP_ 0 0 0 ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 491.6337585449219 3 491.299153 1470.87563 0.24256 0.00011917 0.12621 6.2008E-05 0.36877 0.00018118 491.2990698911255 106.7 0.26133 110.39 110.27 110.53 3.6899 60 38 2 0 0 0 0.68178 1 25145 25145 0.36667 0.27183 1 484360 45293 6961 28564 28577 52139 52139 0.15902759602249716 TQAVLPPQPPK 11 Unmodified _TQAVLPPQPPK_ 0 0 0 AluJo_dup44033|chr10:69099299-69099603:-|5.139734685100015|0.3865418459558998|3.73|151.0|21|3|anti-sense;AluJo_dup66418|chr17:59830823-59831125:-|1.1169189202663568|0.0157207757491147|6.15|151.0|22|3|anti-sense;AluJr_dup67310|chr16:23884537-23884840:-|2.065512397684905|0.0063015827765529|8.36|151.0|18|1|anti-sense AluJo_dup44033|chr10:69099299-69099603:-|5.139734685100015|0.3865418459558998|3.73|151.0|21|3|anti-sense AluJo_dup44033|chr10:69099299-69099603:-|5.139734685100015|0.3865418459558998|3.73|151.0|21|3|anti-sense MSMS UPN46_class_I_Rep_3 1 588.34423828125 2 588.342781 1174.67101 NaN NaN NaN NaN NaN NaN NaN 92.934 1 92.934 92.434 93.434 0 0 0 0 0.38417 1 22508 22508 1.3295 0 1 45294 110 28565 28578 52140 52140 0.09065962948511697 TQAYGQQSY 9 Unmodified _TQAYGQQSY_ 0 0 0 ENST00000485037.5_1_22:29664325-29670342:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1 ENST00000485037.5_1_22:29664325-29670342:+|nuORF ENST00000485037.5_1_22:29664325-29670342:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 523.2325439453125 2 523.232896 1044.45124 0.13242 6.9288E-05 -0.148 -7.7438E-05 -0.015577 -8.1502E-06 523.2327286764502 32.822 0.64269 32.822 32.613 33.256 0 88 46 3 0 0 0 0.039218 3 5677 5628;5677;5719 53.317 27.049 1 170530 45295 4976 28566 28579 52141;52142;52143 52142 -0.06920887729847891 TQCLYHHCI 9 Unmodified _TQCLYHHCI_ 0 0 0 MSTB-int_dup429|chr8:58647863-58649499:+|1.057345632148225|0.0119574043356288|6.47|151.0|44|3|sense;MSTB-int_dup381|chr7:11073089-11074199:-|1.4776127284360114|0.0257778519908254|5.84|150.0|8|1|sense;MSTA-int_dup341|chr2:168604911-168606680:+|1.0932564544982564|0.0237657303953014|5.52|151.0|17|1|sense MSTB-int_dup429|chr8:58647863-58649499:+|1.057345632148225|0.0119574043356288|6.47|151.0|44|3|sense MSTB-int_dup429|chr8:58647863-58649499:+|1.057345632148225|0.0119574043356288|6.47|151.0|44|3|sense MSMS UPN48_class_I_Rep_1 5 559.2501220703125 2 559.249511 1116.48447 NaN NaN NaN NaN NaN NaN NaN 36.766 1 40.273 39.773 40.773 3.507 0 0 0 0.39518 1 6173 6173 1.8442 0 1 45296 16556 28567 28580 52144 52144 -0.06911300483147897 TQCSPFLQPP 10 Unmodified _TQCSPFLQPP_ 0 0 0 REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|51|3|anti-sense REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|51|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.2718505859375 2 559.270967 1116.52738 0.48735 0.00027256 -0.068075 -3.8073E-05 0.41928 0.00023449 559.2707872800711 71.343 0.30364 74.894 74.791 75.095 3.5505 38 29 2 0 0 0 0.56309 1 16612 16612 1.6526 0.17072 1 112400 + 45297 25931 28568 28581 52145 52145 -0.026222071540814795 TQCSPFLQPP 10 Unmodified _TQCSPFLQPP_ 0 0 0 REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|51|3|anti-sense REV__L1MB3_dup8966|chr9:137738222-137739080:+|1.889301279091877|0.0809333260335237|4.54|151.0|51|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 559.270967 1116.52738 0.44897 0.00025109 0.0062054 3.4705E-06 0.45517 0.00025456 559.2705775011345 71.899 0.10346 75.118 75.089 75.192 3.2188 0.11195 7.2574E-05 NaN 1.6526 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 36592 + 45298 25931 28568 28581 -0.026222071540814795 TQEGDSATTKV 11 Unmodified _TQEGDSATTKV_ 0 0 0 REV__nc|ENSG00000154889|Q53F39-5|MPPE1 REV__nc|ENSG00000154889|Q53F39-5|MPPE1 MSMS UPN48_class_I_Rep_1 5 568.7750244140625 2 568.775125 1135.5357 NaN NaN NaN NaN NaN NaN NaN 13.066 1 16.579 16.079 17.079 3.5133 0 0 0 0.38417 1 180 180 0 0 1 + 45299 19751 28569 28582 52146 52146 -0.026649817037878165 TQEIVELIQ 9 Unmodified _TQEIVELIQ_ 0 0 0 nc|ENSG00000198075|O75897-2|SULT1C4;ENSG00000198075|ENST00000272452|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 MULTI-MSMS UPN47_class_I_Rep_2 3 536.8162841796875 2 536.797872 1071.58119 0.42931 0.00023045 0.4516 0.00024242 0.8809 0.00047287 536.798480543774 60.353 0.25346 63.619 63.557 63.81 3.2654 29 18 2 0 0 0 0.11355 2 14118 14118;14156 31.268 0 1 124280 45300 5407 28570 28583 52147;52148 52147 0.04826288549293167 TQEIVELIQ 9 Unmodified _TQEIVELIQ_ 0 0 0 nc|ENSG00000198075|O75897-2|SULT1C4;ENSG00000198075|ENST00000272452|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 MSMS UPN47_class_I_Rep_3 4 536.8162841796875 2 536.797872 1071.58119 NaN NaN NaN NaN NaN NaN NaN 60.459 1 63.624 63.124 64.124 3.1651 0 0 0 0.046227 1 14199 14199 38.176 0 1 45301 5407 28570 28583 52149 52149 0.04826288549293167 TQELKLEY 8 Unmodified _TQELKLEY_ 0 0 0 REV__ENSG00000181804|ENST00000316549|SLC9A9 REV__ENSG00000181804|ENST00000316549|SLC9A9 MSMS UPN48_class_I_Rep_1 5 512.2620239257812 2 512.27149 1022.52843 NaN NaN NaN NaN NaN NaN NaN 76.181 1 79.681 79.181 80.181 3.4996 0 0 0 0.37141 1 18086 18086 17.113 0.1706 1 + 45302 20740 28571 28584 52150 52150 0.01806330486465413 TQELYMHSL 9 Unmodified _TQELYMHSL_ 0 0 0 L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|16|1|sense L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|16|1|sense L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 561.281005859375 2 561.268424 1120.5223 NaN NaN NaN NaN NaN NaN NaN 38.123 1 41.629 41.129 42.129 3.5052 0 0 0 0.38478 1 6564 6564 4.3292 0 1 45303 9215 28572 28585 52151 52151 -0.03314511016696997 TQEPTSPAHF 10 Unmodified _TQEPTSPAHF_ 0 0 0 ENST00000586790.5_1_19:56159538-56160159:+|nuORF ENST00000586790.5_1_19:56159538-56160159:+|nuORF ENST00000586790.5_1_19:56159538-56160159:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.7901000976562 2 557.76182 1113.50909 0.064846 3.6169E-05 -0.046278 -2.5812E-05 0.018568 1.0356E-05 557.7617703860883 41.86 0.72985 45.225 44.923 45.653 3.3655 71 54 2 0 0 0 0.56118 1 8585 8585 2.9952 0.26005 1 119780 45304 7588 28573 28586 52152 52152 -0.043126258044367205 TQEVPVHFLG 10 Unmodified _TQEVPVHFLG_ 0 0 0 L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|133|1|anti-sense L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|133|1|anti-sense L1M3de_dup152|chr6:118864418-118867241:+|2.1139856897820186|0.0375542311978642|5.81|150.0|133|1|anti-sense MSMS UPN48_class_I_Rep_2 6 563.7979125976562 2 563.798206 1125.58186 NaN NaN NaN NaN NaN NaN NaN 53.351 1 56.961 56.461 57.461 3.6098 0 0 0 0.53105 1 11173 11173 1.8442 0.6509 1 45305 8791 28574 28587 52153 52153 0.024091279889717043 TQFIKEISF 9 Unmodified _TQFIKEISF_ 0 0 0 REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|67|2|sense REV__L1MA3_dup1931|chr3:167587808-167592425:-|3.63324538522362|0.0105895959897014|8.42|148.0|67|2|sense MSMS UPN48_class_I_Rep_2 6 556.8020629882812 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 88.903 1 92.641 92.141 93.141 3.7379 0 0 0 0.39428 1 21166 21166 2.0598 0 1 + 45306 24991 28575 28588 52154 52154 0.04002896274505474 TQFQFKHKF 9 Unmodified _TQFQFKHKF_ 0 0 0 REV__THE1B-int_dup512|chr2:152737835-152738986:-|1.287728345406843|0.0513297131196885|4.65|151.0|44|1|anti-sense REV__THE1B-int_dup512|chr2:152737835-152738986:-|1.287728345406843|0.0513297131196885|4.65|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 605.822509765625 2 605.822015 1209.62948 0.4636 0.00028086 0.3742 0.0002267 0.83781 0.00050756 605.8215734919316 70.71 0.060463 74.17 74.131 74.191 3.4598 8 6 2 0 0 0 0.47493 1 16497 16497 3.2813 0 1 77515 + 45307 32247 28576 28589 52155 52155 0.033048269798200636 TQFVEFFVF 9 Unmodified _TQFVEFFVF_ 0 0 0 L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|106|1|anti-sense L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|106|1|anti-sense L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|106|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.2915649414062 2 582.292225 1162.5699 0.47473 0.00027643 -0.17643 -0.00010273 0.2983 0.0001737 582.2920081131813 77.183 0.62675 80.795 80.511 81.137 3.6116 106 60 2 0 0 0 0.43982 1 18258 18258 5.7319 0.43497 1 170300 45308 9705 28577 28590 52156 52156 -0.004884887541948046 TQFVSGSKY 9 Unmodified _TQFVSGSKY_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP nc|ENSG00000171681|Q6VMQ6-5|ATF7IP nc|ENSG00000171681|Q6VMQ6-5|ATF7IP MULTI-MSMS UPN46_class_I_Rep_3 1 508.7558288574219 2 508.756007 1015.49746 0.16229 8.2566E-05 0.0061484 3.128E-06 0.16844 8.5694E-05 508.755826997461 34.733 0.39022 34.733 34.586 34.976 0 42 28 2 0 0 0 0.3924 1 6250 6250 8.4443 2.7125 1 105770 45309 4538 28578 28591 52157 52157 -0.00966822827751912 TQGHQLAG 8 Unmodified _TQGHQLAG_ 0 0 0 REV__ENSG00000174004|ENST00000328557|NRROS REV__ENSG00000174004|ENST00000328557|NRROS MSMS UPN46_class_I_Rep_3 1 405.7984924316406 2 406.206484 810.398415 NaN NaN NaN NaN NaN NaN NaN 68.441 1 68.441 67.941 68.941 0 0 0 0 0.40746 1 15628 15628 0.69038 0 1 + 45310 20504 28579 28592 52158 52158 -0.014368010020007205 TQGQSGRHFT 10 Unmodified _TQGQSGRHFT_ 0 0 0 REV__nc|ENSG00000110013|Q9HAT2-2|SIAE REV__nc|ENSG00000110013|Q9HAT2-2|SIAE MSMS UPN48_class_I_Rep_3 7 559.770751953125 2 559.770511 1117.52647 NaN NaN NaN NaN NaN NaN NaN 19.736 1 23.357 22.857 23.857 3.6215 0 0 0 0.53105 1 1548 1548 2.9952 0.41776 1 + 45311 18420 28580 28593 52159 52159 -0.027592854787599208 TQGRLKSNATR 11 Unmodified _TQGRLKSNATR_ 0 0 0 REV__nc|ENSG00000163093|Q8N3I7-2|BBS5 REV__nc|ENSG00000163093|Q8N3I7-2|BBS5 MSMS UPN48_class_I_Rep_3 7 616.3577270507812 2 616.346917 1230.67928 NaN NaN NaN NaN NaN NaN NaN 65.363 1 68.87 68.37 69.37 3.5077 0 0 0 0.32232 1 14765 14765 10.8 0 1 + 45312 19962 28581 28594 52160 52160 0.07316909917835801 TQHADCTKTL 10 Unmodified _TQHADCTKTL_ 0 0 0 L1M8_dup372|chr3:197096646-197097520:-|1.4493842653294815|0.0467631337597217|4.95|151.0|50|1|anti-sense L1M8_dup372|chr3:197096646-197097520:-|1.4493842653294815|0.0467631337597217|4.95|151.0|50|1|anti-sense L1M8_dup372|chr3:197096646-197097520:-|1.4493842653294815|0.0467631337597217|4.95|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_1 5 559.269775390625 2 559.268955 1116.52336 NaN NaN NaN NaN NaN NaN NaN 71.198 1 74.663 74.163 75.163 3.466 0 0 0 0.53105 1 16629 16629 1.1933 0.39971 1 45313 9246 28582 28595 52161 52161 -0.030242966477771915 TQHKYGIL 8 Unmodified _TQHKYGIL_ 0 0 0 Tigger3a_dup3683|chr11:73106628-73106943:+|1.2818363225721354|0.004648081377013|8.11|151.0|19|2|anti-sense Tigger3a_dup3683|chr11:73106628-73106943:+|1.2818363225721354|0.004648081377013|8.11|151.0|19|2|anti-sense Tigger3a_dup3683|chr11:73106628-73106943:+|1.2818363225721354|0.004648081377013|8.11|151.0|19|2|anti-sense MSMS UPN46_class_I_Rep_3 1 480.2698059082031 2 480.269084 958.523616 NaN NaN NaN NaN NaN NaN NaN 81.172 1 81.172 80.672 81.672 0 0 0 0 0.40738 1 19157 19157 0.79363 0 1 45314 33359 28583 28596 52162 52162 0.04269491134380132 TQHRLLMK 8 Unmodified _TQHRLLMK_ 0 0 0 L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|107|3|sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|107|3|sense L1MA9_dup11086|chr10:107736610-107740036:+|2.2237956051298515|0.0103068997872182|7.75|149.0|107|3|sense MSMS UPN48_class_I_Rep_3 7 513.7975463867188 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 73.502 1 77.04 76.54 77.54 3.5373 0 0 0 0.40746 1 17202 17202 0.69038 0 1 45315 10083 28584 28597 52163 52163 0.06865215419247761 TQIEKARNQ 9 Unmodified _TQIEKARNQ_ 0 0 0 HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|29|3|sense HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|29|3|sense HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|29|3|sense MSMS UPN48_class_I_Rep_1 5 544.2969360351562 2 544.296362 1086.57817 NaN NaN NaN NaN NaN NaN NaN 40.199 1 43.704 43.204 44.204 3.5048 0 0 0 0.39598 1 7187 7187 1.6526 0 1 45316 7867 28585 28598 52164 52164 0.038344582151466966 TQIKRTFK 8 Unmodified _TQIKRTFK_ 0 0 0 REV__L1PA5_dup278|chr1:97397946-97400882:-|2.392390178990216|0.0399319503643138|5.9|151.0|30|1|sense REV__L1PA5_dup278|chr1:97397946-97400882:-|2.392390178990216|0.0399319503643138|5.9|151.0|30|1|sense MSMS UPN47_class_I_Rep_2 3 511.3116455078125 2 511.311284 1020.60801 NaN NaN NaN NaN NaN NaN NaN 103.01 1 106.53 106.03 107.03 3.5231 0 0 0 0.40625 1 25054 25054 2.3027 0 1 + 45317 29746 28586 28599 52165 52165 0.09853441951145214 TQIKTNVT 8 Unmodified _TQIKTNVT_ 0 0 0 LOR1a_dup152|chr3:11494038-11494519:-|1.306957287709086|0.0412444726610028|4.99|151.0|23|1|anti-sense LOR1a_dup152|chr3:11494038-11494519:-|1.306957287709086|0.0412444726610028|4.99|151.0|23|1|anti-sense LOR1a_dup152|chr3:11494038-11494519:-|1.306957287709086|0.0412444726610028|4.99|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_1 5 452.7572937011719 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 19.009 1 22.54 22.04 23.04 3.5313 0 0 0 0.40643 1 1371 1371 2.0598 0 1 45318 15504 28587 28600 52166 52166 0.04693481034848901 TQIVLLGY 8 Unmodified _TQIVLLGY_ 0 0 0 ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|351|3|anti-sense ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|351|3|anti-sense ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|351|3|anti-sense MSMS UPN46_class_I_Rep_3 1 453.75018310546875 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 70.348 1 70.348 69.848 70.848 0 0 0 0 0.40738 1 16161 16161 0.79363 0 1 45319 7773 28588 28601 52167 52167 0.06567857045627079 TQKDILYDH 9 Unmodified _TQKDILYDH_ 0 0 0 L1MA9_dup11662|chr11:94609748-94611218:-|4.238031535334598|0.1770367760200648|4.58|151.0|13|1|sense L1MA9_dup11662|chr11:94609748-94611218:-|4.238031535334598|0.1770367760200648|4.58|151.0|13|1|sense L1MA9_dup11662|chr11:94609748-94611218:-|4.238031535334598|0.1770367760200648|4.58|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 566.7848510742188 2 566.785296 1131.55604 NaN NaN NaN NaN NaN NaN NaN 24.3 1 24.3 23.8 24.8 0 0 0 0 0.39598 1 3172 3172 1.6526 0.32309 1 45320 10093 28589 28602 52168 52168 -0.0044776625329632225 TQKDLSIL 8 Unmodified _TQKDLSIL_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MSMS UPN47_class_I_Rep_3 4 459.2632751464844 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 38.112 1 41.354 40.854 41.854 3.2414 0 0 0 0.35715 1 7383 7383 20.454 0 1 + 45321 21067 28590 28603 52169 52169 0.06134651694674176 TQKENTVF 8 Unmodified _TQKENTVF_ 0 0 0 ENST00000533837.5_1_6:135518016-135539115:+|nuORF;ENST00000529262.5_1_6:135518089-135539115:+|nuORF;nc|ENSG00000118513|P10242-11|MYB;chr6:135200674-135201639|151|39.15|0.55|6.16|+|ENST00000525002|MYB,MYB;chr6:135200557-135201639|150|33.47|0.87|5.27|+|ENST00000528343|MYB,MYB;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-9|MYB;chr6:135193918-135195748|149|12.21|0.34|5.18|+|ENST00000533624|MYB,MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;chr6:135202669-135203217|149|10.7|0.55|4.27|+|ENST00000367812|MYB,MYB;nc|ENSG00000118513|P10242-8|MYB;chr6:135195954-135196961|151|12.18|0.26|5.53|+|ENST00000534121|MYB,MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB ENST00000533837.5_1_6:135518016-135539115:+|nuORF ENST00000533837.5_1_6:135518016-135539115:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 483.74798583984375 2 483.748182 965.481811 0.004835 2.3389E-06 -0.19327 -9.3495E-05 -0.18844 -9.1156E-05 483.74807329901614 29.456 0.4944 29.456 29.251 29.745 0 76 42 2 0 0 0 0.82752 2 4666 4666;4706 15.847 0 1 110380 45322 614 28591 28604 52170;52171 52170 -0.002311093448156498 TQKGRKKP 8 Unmodified _TQKGRKKP_ 0 0 0 L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|10|2|sense L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|10|2|sense L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 471.79583740234375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 23.878 1 27.343 26.843 27.843 3.4655 0 0 0 0.40753 1 3074 3074 0.6015 0 1 45323 13003 28592 28605 52172 52172 0.1039228863688777 TQKIKKLS 8 Unmodified _TQKIKKLS_ 0 0 0 REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|33|2|sense REV__L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 473.80889892578125 2 473.30821 944.601866 -0.8473 -0.00040104 -0.45147 -0.00021368 -1.2988 -0.00061472 473.3082194945262 14.824 0.48083 18.19 18.014 18.495 3.3659 125 58 3 0 0 0 0.82752 1 656 656 5.7319 0 1 126220 + 45324 27419 28593 28606 52173 52173 0.1273492371959719 TQKKKLSL 8 Unmodified _TQKKKLSL_ 0 0 0 ENSG00000122122|ENST00000356892|SASH3 ENSG00000122122|ENST00000356892|SASH3 ENSG00000122122|ENST00000356892|SASH3 MULTI-MSMS UPN47_class_I_Rep_3 4 473.3077392578125 2 473.30821 944.601866 -0.8473 -0.00040104 -0.45147 -0.00021368 -1.2988 -0.00061472 473.3082194945262 14.824 0.48083 18.19 18.014 18.495 3.3659 125 58 3 0 0 0 0.82752 1 624 624 5.7319 0 1 126220 45325 2376 28594 28607 52174 52174 0.12734923719619928 TQKLKYIKVL 10 Unmodified _TQKLKYIKVL_ 0 0 0 L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|41|3|sense L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|41|3|sense L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|41|3|sense MSMS UPN47_class_I_Rep_3 4 617.4119262695312 2 617.400099 1232.78564 NaN NaN NaN NaN NaN NaN NaN 90.422 1 93.82 93.32 94.32 3.3976 0 0 0 0.53105 1 22661 22661 1.4819 0 1 45326 10122 28595 28608 52175 52175 0.17856272430458375 TQKLKYIKVL 10 Unmodified _TQKLKYIKVL_ 0 0 0 L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|41|3|sense L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|41|3|sense L1MA9_dup15571|chr20:10587604-10589097:+|2.14554648812309|0.0340362913893371|5.98|151.0|41|3|sense MSMS UPN47_class_I_Rep_3 4 617.4117431640625 2 617.400099 1232.78564 NaN NaN NaN NaN NaN NaN NaN 102.1 1 105.59 105.09 106.09 3.4873 0 0 0 0.53105 1 25117 25117 1.4819 0 1 45327 10122 28595 28608 52176 52176 0.17856272430458375 TQKLRKLV 8 Unmodified _TQKLRKLV_ 0 0 0 REV__ENST00000466097.1_1_22:38042800-38046733:+|nuORF REV__ENST00000466097.1_1_22:38042800-38046733:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 493.3292236328125 2 493.329476 984.6444 -0.11878 -5.8598E-05 -0.15638 -7.7148E-05 -0.27516 -0.00013575 493.3293635152112 21.525 1.1546 24.949 24.519 25.673 3.4241 188 126 2 0 0 0 0.82752 1 2453 2453 0.79363 0 1 99396 + 45328 18087 28596 28609 52177 52177 0.15146318847826024 TQKSKLKL 8 Unmodified _TQKSKLKL_ 0 0 0 REV__ENST00000603538.1_1_8:64080466-64080652:-|nuORF REV__ENST00000603538.1_1_8:64080466-64080652:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 473.30792236328125 2 473.30821 944.601866 -0.39195 -0.00018551 -0.57092 -0.00027022 -0.96286 -0.00045573 473.3079988174318 14.714 0.36684 18.189 18.053 18.42 3.475 90 39 3 0 0 0 0.82752 1 615 615 3.5965 0 1 182400 + 45329 23223 28597 28610 52178 52178 0.1273492371959719 TQKSKLKL 8 Unmodified _TQKSKLKL_ 0 0 0 REV__ENST00000603538.1_1_8:64080466-64080652:-|nuORF REV__ENST00000603538.1_1_8:64080466-64080652:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 473.3079528808594 2 473.30821 944.601866 -0.29675 -0.00014046 -0.723 -0.0003422 -1.0197 -0.00048266 473.3079268179388 14.773 0.3853 18.161 18.055 18.44 3.3871 100 44 3 0 0 0 0.82752 1 638 638 5.7319 0 1 131040 + 45330 23223 28597 28610 52179 52179 0.1273492371959719 TQLELPGCYV 10 Unmodified _TQLELPGCYV_ 0 0 0 L1PA2_dup551|chr2:143661563-143667611:+|6.154483636234586|0.1044371447650175|5.88|151.0|280|2|anti-sense L1PA2_dup551|chr2:143661563-143667611:+|6.154483636234586|0.1044371447650175|5.88|151.0|280|2|anti-sense L1PA2_dup551|chr2:143661563-143667611:+|6.154483636234586|0.1044371447650175|5.88|151.0|280|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.78076171875 2 561.778625 1121.5427 NaN NaN NaN NaN NaN NaN NaN 38.279 1 41.939 41.439 42.439 3.6595 0 0 0 0.53105 1 6559 6559 6.7232 0.99131 1 45331 14216 28598 28611 52180 52180 -0.013213403568897775 TQLEMQKSLV 10 Unmodified _TQLEMQKSLV_ 0 0 0 L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|364|3|anti-sense L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|364|3|anti-sense L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|364|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 588.8187866210938 2 588.818281 1175.62201 -0.038369 -2.2592E-05 0.10288 6.0578E-05 0.064512 3.7986E-05 588.818335972611 36.205 0.7683 39.874 39.549 40.317 3.6692 93 55 2 0 0 0 0.56374 1 6819 6819 1.1933 0 1 135260 45332 14946 28599 28612 52181 52181 0.04122306597264469 TQLFDTLVN 9 Unmodified _TQLFDTLVN_ 0 0 0 ENST00000468830.1_1_7:131163282-131172484:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENSG00000128585|ENST00000352689|MKLN1 ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENST00000468830.1_1_7:131163282-131172484:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 526.2779541015625 2 525.776939 1049.53933 0.356 0.00018718 3.5805 0.0018826 3.9365 0.0020697 526.7843869972218 79.941 0.055847 83.406 83.39 83.446 3.465 17 7 3 0 0 0 0.032038 2 19929 19929;19931 56.177 6.6228 1 141010 45333 6914 28600 28613 52182;52183 52182 0.016537328607682866 TQLFGRLR 8 Unmodified _TQLFGRLR_ 0 0 0 AluJo_dup42871|chr10:26449730-26450015:+|1.907478667319608|0.0077109658284905|7.95|151.0|7|3|sense AluJo_dup42871|chr10:26449730-26450015:+|1.907478667319608|0.0077109658284905|7.95|151.0|7|3|sense AluJo_dup42871|chr10:26449730-26450015:+|1.907478667319608|0.0077109658284905|7.95|151.0|7|3|sense MSMS UPN47_class_I_Rep_2 3 495.79632568359375 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 73.607 1 76.912 76.412 77.412 3.3048 0 0 0 0.40625 1 18107 18107 2.3027 0 1 45334 108 28601 28614 52184 52184 0.08184288636903148 TQLFGRLR 8 Unmodified _TQLFGRLR_ 0 0 0 AluJo_dup42871|chr10:26449730-26450015:+|1.907478667319608|0.0077109658284905|7.95|151.0|7|3|sense AluJo_dup42871|chr10:26449730-26450015:+|1.907478667319608|0.0077109658284905|7.95|151.0|7|3|sense AluJo_dup42871|chr10:26449730-26450015:+|1.907478667319608|0.0077109658284905|7.95|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 495.7965087890625 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 73.537 1 76.773 76.273 77.273 3.2363 0 0 0 0.40625 1 18166 18166 2.3027 0 1 45335 108 28601 28614 52185 52185 0.08184288636903148 TQLIFKQFF 9 Unmodified _TQLIFKQFF_ 0 0 0 AluJr_dup62041|chr14:73301448-73301765:-|1.2084132415237645|0.1386886792135921|3.12|151.0|13|1|anti-sense AluJr_dup62041|chr14:73301448-73301765:-|1.2084132415237645|0.1386886792135921|3.12|151.0|13|1|anti-sense AluJr_dup62041|chr14:73301448-73301765:-|1.2084132415237645|0.1386886792135921|3.12|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 586.7661743164062 2 586.329142 1170.64373 NaN NaN NaN NaN NaN NaN NaN 34.983 1 38.669 38.169 39.169 3.6859 0 0 0 0.39518 1 6362 6362 1.8442 0 1 45336 167 28602 28615 52186 52186 0.06523479408133426 TQLKVDLTI 9 Unmodified _TQLKVDLTI_ 0 0 0 REV__ENSG00000241128|ENST00000366485|OR14A2 REV__ENSG00000241128|ENST00000366485|OR14A2 MULTI-MSMS UPN48_class_I_Rep_1 5 515.8109130859375 2 515.810782 1029.60701 0.37732 0.00019463 0.20614 0.00010633 0.58347 0.00030096 515.8107954797002 63.589 0.97174 67.047 66.613 67.584 3.4578 168 76 3 0 0 0 0.33908 1 14225 14225 11.495 0 1 1788800 + 45337 21326 28603 28616 52187 52187 0.09339182791563871 TQLPGPRPVF 10 Unmodified _TQLPGPRPVF_ 0 0 0 REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF MSMS UPN47_class_I_Rep_1 2 556.3150024414062 2 556.316566 1110.61858 NaN NaN NaN NaN NaN NaN NaN 64.022 1 67.377 66.877 67.877 3.3557 0 0 0 0.53105 1 15186 15186 1.4819 0.15237 1 + 45338 22763 28604 28617 52188 52188 0.0676942460556802 TQLPLASL 8 Unmodified _TQLPLASL_ 0 0 0 ENSG00000176083|ENST00000349618|ZNF683;nc|ENSG00000176083|Q8IZ20|ZNF683 ENSG00000176083|ENST00000349618|ZNF683 ENSG00000176083|ENST00000349618|ZNF683 MSMS UPN46_class_I_Rep_3 1 421.7511901855469 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 83.162 1 83.162 82.662 83.662 0 0 0 0 0.40625 1 19738 19738 2.3027 0 1 45339 4749 28605 28618 52189 52189 0.06383284011508294 TQLSWLFV 8 Unmodified _TQLSWLFV_ 0 0 0 REV__Tigger17a_dup1015|chr7:131483416-131483954:-|1.785450730729674|0.3801202171429194|2.23|151.0|7|2|sense REV__Tigger17a_dup1015|chr7:131483416-131483954:-|1.785450730729674|0.3801202171429194|2.23|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 497.2631530761719 2 497.273835 992.533118 NaN NaN NaN NaN NaN NaN NaN 45.183 1 48.536 48.036 49.036 3.3534 0 0 0 0.40604 1 9496 9496 2.5775 0 1 + 45340 32597 28606 28619 52190 52190 0.03655259419895174 TQLWDFLAEW 10 Unmodified _TQLWDFLAEW_ 0 0 0 L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|138|1|anti-sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|138|1|anti-sense L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|138|1|anti-sense MSMS UPN48_class_I_Rep_2 6 436.8793640136719 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 26.875 1 30.506 30.006 31.006 3.6311 0 0 0 0.53105 1 3482 3482 0.77653 0.078866 1 45341 15457 28607 28620 52191 52191 -0.022866201851002188 TQLYVQITF 9 Unmodified _TQLYVQITF_ 0 0 0 L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_2 6 556.8038330078125 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.261 1 64.74 64.24 65.24 3.4785 0 0 0 0.23173 1 13595 13595 14.405 0 1 45342 10402 28608 28621 52192 52192 0.04002896274505474 TQLYVQITF 9 Unmodified _TQLYVQITF_ 0 0 0 L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_2 6 556.8029174804688 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.277 1 64.756 64.256 65.256 3.4785 0 0 0 0.31132 1 13599 13599 10.151 0 1 45343 10402 28608 28621 52193 52193 0.04002896274505474 TQLYVQITF 9 Unmodified _TQLYVQITF_ 0 0 0 L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense L1MB3_dup2382|chr2:159776153-159776573:-|3.4794426263555747|0.3306715999215651|3.4|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_3 7 556.8025512695312 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 61.196 1 64.709 64.209 65.209 3.5128 0 0 0 0.35904 1 13504 13504 7.609 0 1 45344 10402 28608 28621 52194 52194 0.04002896274505474 TQMPDPKTF 9 Oxidation (M) _TQM(Oxidation (M))PDPKTF_ TQM(1)PDPKTF TQM(83)PDPKTF 0 0 1 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS UPN46_class_I_Rep_3 1 540.7554931640625 2 540.755149 1079.49575 0.19422 0.00010502 0.056378 3.0487E-05 0.2506 0.00013551 540.7551484361168 34.033 0.5745 34.033 33.737 34.311 0 116 40 4 0 0 0 0.006303 3 6104 6018;6068;6104 96.936 56.986 1 803980 45345 2345 28609 28622 52195;52196;52197 52197 80 -0.04082199908043549 TQMPDPKTF 9 Oxidation (M) _TQM(Oxidation (M))PDPKTF_ TQM(1)PDPKTF TQM(87)PDPKTF 0 0 1 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS UPN46_class_I_Rep_3 1 540.7551879882812 2 540.755149 1079.49575 0.20743 0.00011217 0.10873 5.8797E-05 0.31616 0.00017097 540.7551349499123 34.541 1.3374 34.541 34.283 35.621 0 195 97 3 0 0 0 0.0070648 5 6141 6141;6180;6223;6264;6312 114.5 68.797 1 1006800 45346 2345 28609 28622 52198;52199;52200;52201;52202 52198 80 -0.04082199908043549 TQMYKLGMRH 10 Unmodified _TQMYKLGMRH_ 0 0 0 REV__L1MA4A_dup2210|chr5:175941934-175943345:+|1.1679748715211995|0.0741576304833116|3.98|149.0|22|2|sense REV__L1MA4A_dup2210|chr5:175941934-175943345:+|1.1679748715211995|0.0741576304833116|3.98|149.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 632.8173217773438 2 632.818092 1263.62163 NaN NaN NaN NaN NaN NaN NaN 53.583 1 53.583 53.083 54.083 0 0 0 0 0.53105 1 11539 11539 1.3295 0 1 + 45347 25242 28610 28623 52203 52203 0.00036608396408155386 TQNEVIIF 8 Unmodified _TQNEVIIF_ 0 0 0 REV__L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|70|3|anti-sense REV__L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|70|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.26129150390625 2 482.260925 962.507297 0.13482 6.5021E-05 0.01136 5.4784E-06 0.14618 7.0499E-05 482.26083097068226 62.53 0.75168 65.895 65.63 66.382 3.3642 68 48 2 0 0 0 0.82752 1 14883 14883 2.3027 0 1 149030 + 45348 24544 28611 28624 52204 52204 0.024543651776298248 TQNKDINQY 9 Unmodified _TQNKDINQY_ 0 0 0 ENST00000478357.1_1_10:81036939-81053539:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1 ENST00000478357.1_1_10:81036939-81053539:+|nuORF ENST00000478357.1_1_10:81036939-81053539:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.2728271484375 2 562.272552 1122.53055 0.027807 1.5635E-05 0.04162 2.3402E-05 0.069426 3.9036E-05 562.272489563567 22.922 0.72571 22.922 22.652 23.378 0 146 73 3 0 0 0 0.13455 4 2780 2780;2810;2848;2883 27.223 11.074 1 133180 45349 1854 28612 28625 52205;52206;52207;52208 52205 -0.02581240775725746 TQNKDKEKLSY 11 Unmodified _TQNKDKEKLSY_ 0 0 0 REV__L1MEc_dup9746|chr9:5696753-5697426:-|1.2221356082107346|0.0407264730895142|4.91|150.0|29|3|sense REV__L1MEc_dup9746|chr9:5696753-5697426:-|1.2221356082107346|0.0407264730895142|4.91|150.0|29|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 452.23876953125 3 451.905141 1352.69359 -0.4347 -0.00019644 0.04744 2.1438E-05 -0.38726 -0.00017501 451.905220681885 15.572 0.90853 19.068 18.88 19.789 3.4968 251 109 4 0 0 0 0.39875 3 824 824;886;915 10.315 2.8382 1 230090 + 45350 28500 28613 28626 52209;52210;52211 52209 0.03135517555483602 TQNLNLVF 8 Unmodified _TQNLNLVF_ 0 0 0 L1ME1_dup23150|chr12:116114534-116115997:+|2.071553262288551|0.0154950624856118|7.06|151.0|10|1|sense L1ME1_dup23150|chr12:116114534-116115997:+|2.071553262288551|0.0154950624856118|7.06|151.0|10|1|sense L1ME1_dup23150|chr12:116114534-116115997:+|2.071553262288551|0.0154950624856118|7.06|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 474.7607116699219 2 474.761092 947.507631 -0.25419 -0.00012068 -0.65047 -0.00030882 -0.90466 -0.0004295 474.7609988473079 42.028 0.80206 45.707 45.293 46.095 3.6792 118 55 3 0 0 0 0.82752 1 8595 8595 7.2892 0 1 161400 45351 12308 28614 28627 52212 52212 0.031777848974684275 TQNPHRKRKR 10 Unmodified _TQNPHRKRKR_ 0 0 0 REV__L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|2|1|sense REV__L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|2|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 440.59478759765625 3 440.928837 1319.76468 0.1529 6.7418E-05 0.04298 1.8951E-05 0.19588 8.6369E-05 440.9288646387173 27.389 0.22879 31.02 30.943 31.171 3.6311 40 24 2 0 0 0 0.84575 1 3633 3633 0.15932 0 1 113730 + 45352 25593 28615 28628 52213 52213 0.11759119894122705 TQNRGNFF 8 Unmodified _TQNRGNFF_ 0 0 0 L1ME3B_dup6917|chr16:10459682-10460292:+|1.0845480949839714|0.1279604550830713|3.08|151.0|2|1|sense L1ME3B_dup6917|chr16:10459682-10460292:+|1.0845480949839714|0.1279604550830713|3.08|151.0|2|1|sense L1ME3B_dup6917|chr16:10459682-10460292:+|1.0845480949839714|0.1279604550830713|3.08|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 492.24029541015625 2 492.238316 982.462078 NaN NaN NaN NaN NaN NaN NaN 71.059 1 74.27 73.77 74.77 3.2113 0 0 0 0.37681 1 17418 17418 15.847 1.2655 1 45353 12730 28616 28629 52214 52214 -0.02985440564907549 TQPELPIL 8 Unmodified _TQPELPIL_ 0 0 0 HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|32|1|sense HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|32|1|sense HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|32|1|sense MSMS UPN47_class_I_Rep_3 4 455.76641845703125 2 455.765843 909.517133 NaN NaN NaN NaN NaN NaN NaN 54.677 1 57.863 57.363 58.363 3.1856 0 0 0 0.40738 1 12435 12435 0.79363 0 1 45354 8382 28617 28630 52215 52215 0.05875553183000193 TQPHPNTVY 9 Unmodified _TQPHPNTVY_ 0 0 0 nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000197457|ENST00000370053|STMN3 nc|ENSG00000197457|Q9NZ72-2|STMN3 nc|ENSG00000197457|Q9NZ72-2|STMN3 MULTI-MSMS UPN46_class_I_Rep_3 1 528.7588500976562 2 528.759081 1055.50361 0.054445 2.8789E-05 0.10041 5.3093E-05 0.15486 8.1882E-05 528.7589157803513 29.062 1.0953 29.062 28.62 29.715 0 211 90 3 0 0 0 0.073198 6 4518 4518;4554;4590;4628;4674;4740 40.239 18.493 1 454860 45355 5373 28618 28631 52216;52217;52218;52219;52220;52221 52216 -0.021923045962239485 TQPKELRV 8 Unmodified _TQPKELRV_ 0 0 0 REV__THE1A-int_dup1088|chr12:6467183-6468245:+|1.658927836577667|0.2525264921694579|2.72|151.0|15|2|sense REV__THE1A-int_dup1088|chr12:6467183-6468245:+|1.658927836577667|0.2525264921694579|2.72|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.2873840332031 2 485.787641 969.56073 -0.012146 -5.9005E-06 -1.1262 -0.00054711 -1.1384 -0.00055301 485.78751023054286 46.118 1.3655 49.362 48.963 50.328 3.2441 178 84 3 0 0 0 0.82752 1 10012 10012 1.8442 0 1 398310 + 45356 32204 28619 28632 52222 52222 0.07473162680128098 TQQFFTGF 8 Unmodified _TQQFFTGF_ 0 0 0 Cheshire_dup740|chr11:68521633-68522878:-|1.7966853866594077|0.0168266087311222|6.74|150.0|71|2|anti-sense Cheshire_dup740|chr11:68521633-68522878:-|1.7966853866594077|0.0168266087311222|6.74|150.0|71|2|anti-sense Cheshire_dup740|chr11:68521633-68522878:-|1.7966853866594077|0.0168266087311222|6.74|150.0|71|2|anti-sense MSMS UPN48_class_I_Rep_1 5 488.2325134277344 2 488.232168 974.449782 NaN NaN NaN NaN NaN NaN NaN 73.611 1 77.092 76.592 77.592 3.4812 0 0 0 0.36226 1 17356 17356 19.257 0 1 45357 559 28620 28633 52223 52223 -0.038464770279460936 TQQKVLEY 8 Unmodified _TQQKVLEY_ 0 0 0 ENSG00000092067|ENST00000206513|CEBPE ENSG00000092067|ENST00000206513|CEBPE ENSG00000092067|ENST00000206513|CEBPE MSMS UPN46_class_I_Rep_3 1 504.8088073730469 2 504.771657 1007.52876 NaN NaN NaN NaN NaN NaN NaN 35.89 1 35.89 35.39 36.39 0 0 0 0 0.38875 1 6588 6588 12.241 2.8575 1 45358 1385 28621 28634 52224 52224 0.025297502063153843 TQQLQATEL 9 Unmodified _TQQLQATEL_ 0 0 0 L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|5|1|sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|5|1|sense L1M1_dup837|chr2:61425139-61427042:+|1.767863816303285|0.0156159443213834|6.82|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.2722778320312 2 516.272021 1030.52949 -0.06982 -3.6046E-05 0.49929 0.00025777 0.42947 0.00022172 516.2722105105861 42.482 0.5795 45.721 45.491 46.071 3.2394 56 38 2 0 0 0 0.47493 1 8686 8686 3.2813 0 1 67674 45359 8636 28622 28635 52225 52225 0.015445448553691676 TQQLVQLL 8 Unmodified _TQQLVQLL_ 0 0 0 REV__ENST00000534518.1_1_11:77024925-77025045:+|nuORF REV__ENST00000534518.1_1_11:77024925-77025045:+|nuORF MSMS UPN48_class_I_Rep_2 6 471.7958679199219 2 471.784567 941.554582 NaN NaN NaN NaN NaN NaN NaN 57.49 1 61.005 60.505 61.505 3.5142 0 0 0 0.40625 1 12439 12439 2.3027 0 1 + 45360 20495 28623 28636 52226 52226 0.08146644448606821 TQQPVLLL 8 Unmodified _TQQPVLLL_ 0 0 0 L1MA3_dup1279|chr2:232096385-232098047:-|1.0308998041419235|0.0526859228343532|4.29|150.0|79|2|anti-sense L1MA3_dup1279|chr2:232096385-232098047:-|1.0308998041419235|0.0526859228343532|4.29|150.0|79|2|anti-sense L1MA3_dup1279|chr2:232096385-232098047:-|1.0308998041419235|0.0526859228343532|4.29|150.0|79|2|anti-sense MSMS UPN46_class_I_Rep_3 1 456.2821960449219 2 456.28166 910.548768 NaN NaN NaN NaN NaN NaN NaN 79.795 1 79.795 79.295 80.295 0 0 0 0 0.40738 1 18764 18764 0.79363 0 1 45361 9468 28624 28637 52227 52227 0.08991545936953571 TQQQVVVF 8 Unmodified _TQQQVVVF_ 0 0 0 REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F MULTI-MSMS UPN47_class_I_Rep_2 3 474.76116943359375 2 474.761092 947.507631 -0.24277 -0.00011526 -0.8371 -0.00039742 -1.0799 -0.00051268 474.76101005530467 42.337 0.71437 45.698 45.409 46.124 3.3611 118 53 3 0 0 0 0.82752 1 8649 8649 10.824 0 1 144330 + 45362 19691 28625 28638 52228 52228 0.03177784897479796 TQQQVVVF 8 Unmodified _TQQQVVVF_ 0 0 0 REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F MULTI-MSMS UPN47_class_I_Rep_3 4 474.7610778808594 2 474.761092 947.507631 -0.32869 -0.00015605 -1.0981 -0.00052133 -1.4268 -0.00067738 474.76101280312105 42.459 0.99269 45.699 45.236 46.228 3.2394 114 69 2 0 0 0 0.82752 2 8664 8664;8788 12.532 0 1 151710 + 45363 19691 28625 28638 52229;52230 52229 0.03177784897479796 TQREKLTF 8 Unmodified _TQREKLTF_ 0 0 0 ENST00000526250.5_1_11:66259118-66263112:+|nuORF;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3 ENST00000526250.5_1_11:66259118-66263112:+|nuORF ENST00000526250.5_1_11:66259118-66263112:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 511.78472900390625 2 511.785099 1021.55564 -0.38046 -0.00019471 0.092285 4.723E-05 -0.28818 -0.00014749 511.78515144500653 28.568 0.7831 31.902 31.626 32.409 3.3337 107 67 2 0 0 0 0.82752 2 4529 4529;4566 6.2058 0 1 71516 45364 5760 28626 28639 52231;52232 52231 0.045728588175165896 TQRKVVVSH 9 Unmodified _TQRKVVVSH_ 0 0 0 nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENSG00000149100|ENST00000531120|EIF3M nc|ENSG00000149100|Q7L2H7-2|EIF3M nc|ENSG00000149100|Q7L2H7-2|EIF3M MULTI-MSMS UPN46_class_I_Rep_3 1 527.3114013671875 2 527.311815 1052.60908 -0.27202 -0.00014344 0.00299 1.5767E-06 -0.26903 -0.00014186 527.3117047981843 13.454 0.35594 13.454 13.362 13.717 0 78 42 3 0 0 0 0.19147 1 378 378 21.537 5.6898 1 75439 45365 3527 28627 28640 52233 52233 0.08487656320039605 TQRPRKKRPS 10 Unmodified _TQRPRKKRPS_ 0 0 0 REV__nc|ENSG00000107447|P04053-2|DNTT REV__nc|ENSG00000107447|P04053-2|DNTT MSMS UPN48_class_I_Rep_3 7 627.3838500976562 2 627.381094 1252.74764 NaN NaN NaN NaN NaN NaN NaN 103.69 1 107.43 106.93 107.93 3.7434 0 0 0 0.53105 1 24487 24487 5.7319 0 1 + 45366 17423 28628 28641 52234 52234 0.13137199288371448 TQRQRETER 9 Unmodified _TQRQRETER_ 0 0 0 REV__HERVIP10FH-int_dup335|chr17:43272629-43272830:+|2.353288574443832|0.0175886798537684|7.06|151.0|2|2|sense REV__HERVIP10FH-int_dup335|chr17:43272629-43272830:+|2.353288574443832|0.0175886798537684|7.06|151.0|2|2|sense MSMS UPN48_class_I_Rep_1 5 401.8775634765625 3 401.877808 1202.6116 NaN NaN NaN NaN NaN NaN NaN 15.687 1 19.206 18.706 19.706 3.5184 0 0 0 0.40038 1 658 658 0.26902 0 1 + 45367 23769 28629 28642 52235 52235 0.018394599870134698 TQRTNTAY 8 Unmodified _TQRTNTAY_ 0 0 0 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS UPN46_class_I_Rep_3 1 477.7352600097656 2 477.735606 953.456658 NaN NaN NaN NaN NaN NaN NaN 14.965 1 14.965 14.465 15.465 0 0 0 0 0.39996 1 762 762 7.9102 2.1497 1 45368 4881 28630 28643 52236 52236 -0.021931641473997843 TQRVSLQN 8 Unmodified _TQRVSLQN_ 0 0 0 REV__LTR12C_dup1032|chr6:6612150-6613802:-|1.2623599977953783|0.0237995610283225|5.73|149.0|47|3|sense REV__LTR12C_dup1032|chr6:6612150-6613802:-|1.2623599977953783|0.0237995610283225|5.73|149.0|47|3|sense MSMS UPN48_class_I_Rep_2 6 473.25872802734375 2 473.259248 944.503943 NaN NaN NaN NaN NaN NaN NaN 50.613 1 54.281 53.781 54.781 3.6679 0 0 0 0.40472 1 10349 10349 4.3292 1.7518 1 + 45369 30793 28631 28644 52237 52237 0.029471151236066362 TQRWRRKF 8 Unmodified _TQRWRRKF_ 0 0 0 REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF MSMS UPN48_class_I_Rep_2 6 589.3375244140625 2 589.338698 1176.66284 NaN NaN NaN NaN NaN NaN NaN 110.99 1 114.65 114.15 115.15 3.669 0 0 0 0.40746 1 26394 26394 0.69038 0 1 + 45370 22266 28632 28645 52238 52238 0.08157873542381822 TQSGINGTY 9 Unmodified _TQSGINGTY_ 0 0 0 ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF;ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF ENSG00000115271|ENST00000437150|GCA ENSG00000115271|ENST00000437150|GCA MULTI-MSMS UPN46_class_I_Rep_3 1 470.72174072265625 2 470.722164 939.429775 0.074182 3.4919E-05 -0.17048 -8.0247E-05 -0.096293 -4.5327E-05 470.72200471502606 34.203 0.54372 34.203 33.99 34.534 0 53 38 2 0 0 0 0.21414 1 6081 6081 19.362 3.2128 1 148320 45371 2119 28633 28646 52239 52239 -0.042362727585668836 TQSKTPALI 9 Unmodified _TQSKTPALI_ 0 0 0 REV__Tigger1_dup6939|chr9:69719631-69721985:+|2.4007455457021654|0.2567901665965605|3.22|150.0|155|3|anti-sense REV__Tigger1_dup6939|chr9:69719631-69721985:+|2.4007455457021654|0.2567901665965605|3.22|150.0|155|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.7817077636719 2 479.782025 957.549496 0.18592 8.9201E-05 -0.27709 -0.00013294 -0.09117 -4.3742E-05 479.7819023669021 55.905 0.56448 59.406 59.104 59.669 3.5014 66 40 2 0 0 0 0.43982 1 11920 11920 5.7319 0.50118 1 95617 + 45372 32511 28634 28647 52240 52240 0.06902340585986622 TQSKTPALI 9 Unmodified _TQSKTPALI_ 0 0 0 REV__Tigger1_dup6939|chr9:69719631-69721985:+|2.4007455457021654|0.2567901665965605|3.22|150.0|155|3|anti-sense REV__Tigger1_dup6939|chr9:69719631-69721985:+|2.4007455457021654|0.2567901665965605|3.22|150.0|155|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.78167724609375 2 479.782025 957.549496 0.35348 0.0001696 -0.23658 -0.00011351 0.11691 5.6089E-05 479.78190821027505 55.797 0.66978 59.353 59.079 59.749 3.5559 67 47 2 0 0 0 0.43982 2 11894 11894;11899 5.7319 5.7319 1 116030 + 45373 32511 28634 28647 52241;52242 52241 0.06902340585986622 TQSLRRLSY 9 Unmodified _TQSLRRLSY_ 0 0 0 ENST00000301310.8_1_19:56894189-56894219:-|nuORF ENST00000301310.8_1_19:56894189-56894219:-|nuORF ENST00000301310.8_1_19:56894189-56894219:-|nuORF MSMS UPN46_class_I_Rep_3 1 562.3349609375 2 562.314554 1122.61456 NaN NaN NaN NaN NaN NaN NaN 39.02 1 39.02 38.52 39.52 0 0 0 0 0.38639 1 7472 7472 3.9444 0 1 45374 6073 28635 28648 52243 52243 0.05815335111856257 TQSNELYQH 9 Unmodified _TQSNELYQH_ 0 0 0 REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|16|1|sense REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.2565307617188 2 560.256902 1118.49925 -0.10718 -6.005E-05 -0.56638 -0.00031732 -0.67356 -0.00037737 560.2566287561432 35.226 0.72981 38.49 38.162 38.892 3.2639 106 50 3 0 0 0 0.48846 1 6429 6429 1.8442 0 1 151090 + 45375 27668 28636 28649 52244 52244 -0.05525813809799729 TQSRTFCC 8 Unmodified _TQSRTFCC_ 0 0 0 MLT1K_dup14547|chr16:57072011-57072430:-|2.0303160578505|0.4830870292820781|2.07|151.0|11|3|sense MLT1K_dup14547|chr16:57072011-57072430:-|2.0303160578505|0.4830870292820781|2.07|151.0|11|3|sense MLT1K_dup14547|chr16:57072011-57072430:-|2.0303160578505|0.4830870292820781|2.07|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 472.7278747558594 2 473.199487 944.384421 NaN NaN NaN NaN NaN NaN NaN 105.96 1 109.58 109.08 110.08 3.6277 0 0 0 0.40604 1 25532 25532 2.5775 0 1 45376 16477 28637 28650 52245 52245 -0.08999537816964676 TQSRTFCC 8 Unmodified _TQSRTFCC_ 0 0 0 MLT1K_dup14547|chr16:57072011-57072430:-|2.0303160578505|0.4830870292820781|2.07|151.0|11|3|sense MLT1K_dup14547|chr16:57072011-57072430:-|2.0303160578505|0.4830870292820781|2.07|151.0|11|3|sense MLT1K_dup14547|chr16:57072011-57072430:-|2.0303160578505|0.4830870292820781|2.07|151.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 472.75836181640625 2 473.199487 944.384421 NaN NaN NaN NaN NaN NaN NaN 83.847 1 87.576 87.076 88.076 3.7281 0 0 0 0.40604 1 19888 19888 2.5775 0 1 45377 16477 28637 28650 52246 52246 -0.08999537816964676 TQTFFFVTL 9 Unmodified _TQTFFFVTL_ 0 0 0 nc|ENSG00000158731|Q8NGY7|OR10J6P nc|ENSG00000158731|Q8NGY7|OR10J6P nc|ENSG00000158731|Q8NGY7|OR10J6P MULTI-MSMS UPN48_class_I_Rep_1 5 552.7941284179688 2 552.292225 1102.5699 0.54727 0.00030225 -0.085624 -4.729E-05 0.46165 0.00025496 552.2920428080362 68.585 1.0209 72.037 71.658 72.679 3.4517 241 85 4 0 0 0 0.46869 1 16014 16014 3.9444 0 1 1549200 45378 16724 28638 28651 52247 52247 0.02271511245817237 TQTFFFVTL 9 Unmodified _TQTFFFVTL_ 0 0 0 nc|ENSG00000158731|Q8NGY7|OR10J6P nc|ENSG00000158731|Q8NGY7|OR10J6P nc|ENSG00000158731|Q8NGY7|OR10J6P MULTI-MSMS UPN48_class_I_Rep_3 7 552.2920532226562 2 552.292225 1102.5699 0.44905 0.00024801 0.041791 2.3081E-05 0.49084 0.00027109 552.292119527729 68.295 1.0645 71.804 71.476 72.54 3.5093 190 89 3 0 0 0 0.47197 1 15826 15826 3.5965 0 1 1581600 45379 16724 28638 28651 52248 52248 0.02271511245817237 TQTKNFQQE 9 Unmodified _TQTKNFQQE_ 0 0 0 L1MEd_dup16596|chr12:132072329-132073005:-|1.635997777365084|0.3825905262404654|2.1|151.0|8|2|sense L1MEd_dup16596|chr12:132072329-132073005:-|1.635997777365084|0.3825905262404654|2.1|151.0|8|2|sense L1MEd_dup16596|chr12:132072329-132073005:-|1.635997777365084|0.3825905262404654|2.1|151.0|8|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3343505859375 2 562.272552 1122.53055 0.027807 1.5635E-05 0.04162 2.3402E-05 0.069426 3.9036E-05 562.272489563567 22.922 0.72571 22.922 22.652 23.378 0 146 73 3 0 0 0 0.49187 1 2921 2921 1.4819 0.28856 1 133180 45380 13183 28639 28652 52249 52249 -0.025812407757030087 TQTYGQVL 8 Unmodified _TQTYGQVL_ 0 0 0 REV__L1M4a2_dup1818|chr17:60248101-60249847:-|3.0150523473388544|0.0868084673292838|5.12|151.0|52|3|sense REV__L1M4a2_dup1818|chr17:60248101-60249847:-|3.0150523473388544|0.0868084673292838|5.12|151.0|52|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 455.23736572265625 2 455.23745 908.460347 -0.35523 -0.00016171 -0.0072193 -3.2865E-06 -0.36245 -0.000165 455.23736299258445 35.187 0.68419 38.863 38.615 39.299 3.6762 105 47 3 0 0 0 0.82752 1 6366 6366 3.5965 0 1 259030 + 45381 24506 28640 28653 52250 52250 0.002455056264693667 TQVFGEHFF 9 Unmodified _TQVFGEHFF_ 0 0 0 ENSG00000258817|ENST00000555099|OR4C13;ENSG00000185926|ENST00000328188|OR4C46 ENSG00000258817|ENST00000555099|OR4C13 ENSG00000258817|ENST00000555099|OR4C13 MSMS UPN47_class_I_Rep_1 2 556.2628784179688 2 556.263999 1110.51345 NaN NaN NaN NaN NaN NaN NaN 86.923 1 90.56 90.06 91.06 3.6372 0 0 0 0.39428 1 21716 21716 2.0598 0 1 45382 5129 28641 28654 52251 52251 -0.03739116590872982 TQVFYYYL 8 Unmodified _TQVFYYYL_ 0 0 0 REV__Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|14|3|sense REV__Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 548.77099609375 2 548.771126 1095.5277 NaN NaN NaN NaN NaN NaN NaN 16.936 1 16.936 16.436 17.436 0 0 0 0 0.40581 1 1254 1254 2.8892 0 1 + 45383 32820 28642 28655 52252 52252 -0.016244641625689837 TQVHLHPKR 9 Unmodified _TQVHLHPKR_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MSMS UPN48_class_I_Rep_2 6 558.3269653320312 2 558.325257 1114.63596 NaN NaN NaN NaN NaN NaN NaN 90.675 1 94.431 93.931 94.931 3.7554 0 0 0 0.3967 1 21598 21598 1.4819 0 1 45384 1245 28643 28656 52253 52253 0.08322764931222082 TQVSSLSVVP 10 Unmodified _TQVSSLSVVP_ 0 0 0 ENST00000575801.5_2_17:703870-704173:-|nuORF ENST00000575801.5_2_17:703870-704173:-|nuORF ENST00000575801.5_2_17:703870-704173:-|nuORF MSMS UPN48_class_I_Rep_3 7 508.7865905761719 2 508.784764 1015.55498 NaN NaN NaN NaN NaN NaN NaN 16.602 1 20.151 19.651 20.651 3.5486 0 0 0 0.53105 1 828 828 1.4819 0.28856 1 45385 7528 28644 28657 52254 52254 0.04782019377819324 TQWPHDKI 8 Unmodified _TQWPHDKI_ 0 0 0 L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|28|2|sense L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|28|2|sense L1M4c_dup1414|chr7:67222223-67224005:-|2.3817372758712017|0.1121255320429216|4.41|151.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 512.7634887695312 2 512.764166 1023.51378 NaN NaN NaN NaN NaN NaN NaN 26.516 1 30.15 29.65 30.65 3.6332 0 0 0 0.40625 1 3387 3387 2.3027 0 1 45386 9040 28645 28658 52255 52255 0.0029630312899371347 TQYESKVFY 9 Unmodified _TQYESKVFY_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MSMS UPN46_class_I_Rep_3 1 582.7813720703125 2 582.782222 1163.54989 NaN NaN NaN NaN NaN NaN NaN 46.102 1 46.102 45.602 46.602 0 0 0 0 0.34878 1 9426 9426 8.1555 0.8663 1 45387 4450 28646 28659 52256 52256 -0.025342844847955348 TQYESKVFY 9 Unmodified _TQYESKVFY_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MSMS UPN46_class_I_Rep_3 1 582.7821655273438 2 582.782222 1163.54989 NaN NaN NaN NaN NaN NaN NaN 46.242 1 46.242 45.742 46.742 0 0 0 0 0.34878 1 9466 9466 8.1555 2.4237 1 45388 4450 28646 28659 52257 52257 -0.025342844847955348 TQYSAVRTVR 10 Unmodified _TQYSAVRTVR_ 0 0 0 nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2 nc|ENSG00000198010|Q9P1A6-3|DLGAP2 nc|ENSG00000198010|Q9P1A6-3|DLGAP2 MSMS UPN48_class_I_Rep_1 5 590.8260498046875 2 590.825286 1179.63602 NaN NaN NaN NaN NaN NaN NaN 57.351 1 60.845 60.345 61.345 3.4942 0 0 0 0.53105 1 12418 12418 2.4985 0.19575 1 45389 5402 28647 28660 52258 52258 0.0533872014057124 TRAEKLKTLKI 11 Unmodified _TRAEKLKTLKI_ 0 0 0 L1PA6_dup4797|chr12:94389500-94395161:+|1.9480680243414688|0.0648206898484156|4.91|151.0|120|3|sense L1PA6_dup4797|chr12:94389500-94395161:+|1.9480680243414688|0.0648206898484156|4.91|151.0|120|3|sense L1PA6_dup4797|chr12:94389500-94395161:+|1.9480680243414688|0.0648206898484156|4.91|151.0|120|3|sense MSMS UPN48_class_I_Rep_3 7 434.2919921875 3 434.281883 1299.82382 NaN NaN NaN NaN NaN NaN NaN 63.12 1 66.63 66.13 67.13 3.5091 0 0 0 0.38417 1 14087 14087 1.2148 0.51716 1 45390 14651 28648 28661 52259 52259 0.18590158345136842 TRAHKAKT 8 Unmodified _TRAHKAKT_ 0 0 0 L1PA7_dup3437|chr4:102329643-102333176:+|1.9858265844019416|0.0352729418273434|5.82|151.0|97|3|sense L1PA7_dup3437|chr4:102329643-102333176:+|1.9858265844019416|0.0352729418273434|5.82|151.0|97|3|sense L1PA7_dup3437|chr4:102329643-102333176:+|1.9858265844019416|0.0352729418273434|5.82|151.0|97|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.7722473144531 2 456.772326 911.530098 -0.97834 -0.00044688 1.0854 0.0004958 0.1071 4.8919E-05 456.7726703445506 18.159 0.16085 21.513 21.39 21.55 3.3545 24 16 2 0 0 0 0.82752 1 1437 1437 1.8442 1.1539 1 25994 45391 14809 28649 28662 52260 52260 0.07079429085752054 TRAHVCLL 8 Unmodified _TRAHVCLL_ 0 0 0 L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|45|1|sense;L1PA4_dup4484|chr6:38298862-38302023:-|1.3560743120974033|0.0319070304697525|5.41|151.0|85|3|sense;L1PA3_dup9441|chr14:81114166-81120190:+|1.2016156260747857|0.4862989605285416|1.31|151.0|159|3|sense;L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|11|1|sense L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|45|1|sense L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|45|1|sense MSMS UPN48_class_I_Rep_2 6 456.759521484375 2 456.75783 911.501106 NaN NaN NaN NaN NaN NaN NaN 118.53 1 122.19 121.69 122.69 3.6627 0 0 0 0.40738 1 28423 28423 0.79363 0 1 45392 14293 28650 28663 52261 52261 0.04181568465116925 TRALPRAG 8 Unmodified _TRALPRAG_ 0 0 0 L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|1|1|sense;L1MB4_dup3449|chr7:75450364-75451884:+|2.071617301683661|0.2986339002213939|2.79|151.0|1|1|sense L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|1|1|sense L1MB4_dup3466|chr7:76634970-76636490:+|5.292124846828563|0.3035838231184639|4.12|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 421.7568359375 2 421.253769 840.492984 0.15615 6.5777E-05 0.256 0.00010784 0.41215 0.00017362 421.25386490276713 75.017 0.48056 78.583 78.409 78.89 3.5659 61 48 2 0 0 0 0.72333 1 17555 17555 0.6015 0 1 121590 45393 10503 28651 28664 52262 52262 0.06635757539993392 TRAPFLFQR 9 Unmodified _TRAPFLFQR_ 0 0 0 L1PA7_dup10879|chr13:48393954-48395977:+|1.9873047912542687|0.0851020593717714|4.55|151.0|51|3|sense L1PA7_dup10879|chr13:48393954-48395977:+|1.9873047912542687|0.0851020593717714|4.55|151.0|51|3|sense L1PA7_dup10879|chr13:48393954-48395977:+|1.9873047912542687|0.0851020593717714|4.55|151.0|51|3|sense MSMS UPN48_class_I_Rep_1 5 567.8493041992188 2 568.322183 1134.62981 NaN NaN NaN NaN NaN NaN NaN 101.16 1 104.77 104.27 105.27 3.612 0 0 0 0.38916 1 24424 24424 3.2813 0.28607 1 45394 14712 28652 28665 52263 52263 0.06788246699693445 TRAVEPLR 8 Unmodified _TRAVEPLR_ 0 0 0 ENST00000591478.1_1_16:5080487-5083590:-|nuORF;nc|ENSG00000103174|Q9UK23-3|NAGPA;ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA ENST00000591478.1_1_16:5080487-5083590:-|nuORF ENST00000591478.1_1_16:5080487-5083590:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 471.2798156738281 2 471.279983 940.545414 0.16318 7.6902E-05 -0.12948 -6.102E-05 0.033698 1.5881E-05 471.2799468142332 83.703 0.64653 87.268 86.951 87.597 3.5655 99 78 2 0 0 0 0.82752 1 20878 20878 3.5965 0.31518 1 120970 45395 1647 28653 28666 52264 52264 0.07276295882957129 TRCKTKKW 8 Unmodified _TRCKTKKW_ 0 0 0 REV__L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense REV__L1ME4b_dup7872|chr6:36727101-36727439:+|1.1527336603022718|0.0129333130259266|6.48|150.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 525.7965087890625 2 525.797486 1049.58042 NaN NaN NaN NaN NaN NaN NaN 30.509 1 34.224 33.724 34.724 3.7146 0 0 0 0.40472 1 4411 4411 4.3292 0.38484 1 + 45396 28308 28654 28667 52265 52265 0.05761215419238397 TRCMLFLFV 9 Unmodified _TRCMLFLFV_ 0 0 0 REV__L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|146|3|anti-sense REV__L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|146|3|anti-sense MSMS UPN47_class_I_Rep_2 3 565.2969360351562 2 565.298473 1128.58239 NaN NaN NaN NaN NaN NaN NaN 38.067 1 41.454 40.954 41.954 3.3879 0 0 0 0.38784 1 7330 7330 3.5965 0.31518 1 + 45397 27953 28655 28668 52266 52266 0.02324508112815238 TRCSHHHI 8 Unmodified _TRCSHHHI_ 0 0 0 REV__L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|20|2|sense REV__L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 495.7677307128906 2 495.73796 989.461367 NaN NaN NaN NaN NaN NaN NaN 119.26 1 122.74 122.24 123.24 3.4793 0 0 0 0.40798 1 29207 29207 0 0 1 + 45398 30593 28656 28669 52267 52267 -0.03378558485621852 TRDEDDDEEE 10 Unmodified _TRDEDDDEEE_ 0 0 0 nc|ENSG00000143575|O00165-4|HAX1;ENST00000531435.5_1_1:154245130-154246130:+|nuORF;nc|ENSG00000143575|O00165-6|HAX1;nc|ENSG00000143575|O00165-3|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1 nc|ENSG00000143575|O00165-4|HAX1 nc|ENSG00000143575|O00165-4|HAX1 MSMS UPN47_class_I_Rep_3 4 626.7239379882812 2 626.726026 1251.4375 NaN NaN NaN NaN NaN NaN NaN 20.439 1 23.788 23.288 24.288 3.3496 0 0 0 0.53105 1 2108 2108 1.6526 0 1 45399 3312 28657 28670 52268 52268 -0.17816254810281862 TRDIKNLFKE 10 Unmodified _TRDIKNLFKE_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|115|2|sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|115|2|sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|115|2|sense MSMS UPN48_class_I_Rep_1 5 632.3572998046875 2 632.356419 1262.69829 NaN NaN NaN NaN NaN NaN NaN 71.644 1 75.11 74.61 75.61 3.466 0 0 0 0.53105 1 16764 16764 1.4819 0 1 45400 13654 28658 28671 52269 52269 0.07744446488914036 TRDQYLIF 8 Unmodified _TRDQYLIF_ 0 0 0 nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 MSMS UPN47_class_I_Rep_2 3 528.2775268554688 2 528.279649 1054.54475 NaN NaN NaN NaN NaN NaN NaN 29.456 1 32.948 32.448 33.448 3.4923 0 0 0 0.40604 1 4720 4720 2.5775 0 1 45401 777 28659 28672 52270 52270 0.0196545644323578 TRDRAIVL 8 Unmodified _TRDRAIVL_ 0 0 0 AluSq2_dup16975|chr5:70973522-70973778:+|1.016985139643642|0.3072790089062379|1.73|150.0|4|1|sense AluSq2_dup16975|chr5:70973522-70973778:+|1.016985139643642|0.3072790089062379|1.73|150.0|4|1|sense AluSq2_dup16975|chr5:70973522-70973778:+|1.016985139643642|0.3072790089062379|1.73|150.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.2878112792969 2 472.287808 942.561064 0.098737 4.6632E-05 -0.0080681 -3.8105E-06 0.090669 4.2822E-05 472.28773672819216 86.651 0.48625 90.264 90.187 90.673 3.613 112 65 2 0 0 0 0.82752 1 20809 20809 0.79363 0 1 726770 45402 249 28660 28673 52271 52271 0.08748582399982752 TREDPLLVY 9 Unmodified _TREDPLLVY_ 0 0 0 REV__ENSG00000101138|ENST00000217109|CSTF1 REV__ENSG00000101138|ENST00000217109|CSTF1 MSMS UPN46_class_I_Rep_3 1 553.3003540039062 2 553.298039 1104.58152 NaN NaN NaN NaN NaN NaN NaN 26.218 1 26.218 25.718 26.718 0 0 0 0 0.39428 1 3715 3715 2.0598 0.21551 1 + 45403 18150 28661 28674 52272 52272 0.033417082691585165 TRENLYEY 8 Unmodified _TRENLYEY_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;nc|ENSG00000198300|Q9GZU2-3|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-SECPEP UPN47_class_I_Rep_1 2 544.3270874023438 2 544.256371 1086.49819 0.006948 3.7815E-06 0.078085 4.2498E-05 0.085033 4.628E-05 544.2563390422364 37.488 0.80946 41.153 40.897 41.706 3.6652 114 58 3 0 0 0 0.72333 1 7161 7161 27.629 2.6378 1 149970 45404 5426 28662 28675 52273 52273 -0.04160028178716857 TRENLYEY 8 Unmodified _TRENLYEY_ 0 0 0 ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;nc|ENSG00000198300|Q9GZU2-3|PEG3 ENSG00000198300|ENST00000326441|PEG3 ENSG00000198300|ENST00000326441|PEG3 MULTI-MSMS UPN47_class_I_Rep_2 3 544.256591796875 2 544.256371 1086.49819 0.012368 6.7316E-06 0.15621 8.5018E-05 0.16858 9.1749E-05 544.2563637861468 37.855 0.8527 41.243 40.97 41.822 3.3879 111 68 2 0 0 0 0.82752 1 7235 7235 14.838 1.7958 1 192690 45405 5426 28662 28675 52274 52274 -0.04160028178716857 TREPHKSL 8 Unmodified _TREPHKSL_ 0 0 0 REV__L1MC3_dup11497|chr16:81663121-81664011:+|1.0259167765159622|0.4156810928425922|1.3|151.0|14|2|sense REV__L1MC3_dup11497|chr16:81663121-81664011:+|1.0259167765159622|0.4156810928425922|1.3|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 484.26953125 2 484.269616 966.524678 -0.62106 -0.00030076 0.082802 4.0098E-05 -0.53826 -0.00026066 484.2697064095342 21.978 0.89223 25.328 24.97 25.862 3.3496 107 82 2 0 0 0 0.82752 1 2610 2610 4.3292 0 1 75953 + 45406 26709 28663 28676 52275 52275 0.04007705503283887 TRERRHTM 8 Unmodified _TRERRHTM_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MSMS UPN47_class_I_Rep_2 3 543.7819213867188 2 543.782899 1085.55124 NaN NaN NaN NaN NaN NaN NaN 51.252 1 54.59 54.09 55.09 3.3386 0 0 0 0.40625 1 11337 11337 2.3027 0 1 + 45407 17642 28664 28677 52276 52276 0.011890711229625595 TREYHSTIE 9 Unmodified _TREYHSTIE_ 0 0 0 REV__MER41-int_dup1378|chr14:102858453-102860449:-|4.086606221989576|0.0155432925963332|8.04|151.0|1|1|sense REV__MER41-int_dup1378|chr14:102858453-102860449:-|4.086606221989576|0.0155432925963332|8.04|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 568.2701416015625 2 568.272552 1134.53055 NaN NaN NaN NaN NaN NaN NaN 43.211 1 46.453 45.953 46.953 3.2419 0 0 0 0.3967 1 8944 8944 1.4819 0.28856 1 + 45408 31289 28665 28678 52277 52277 -0.03133240775696322 TRFFFFVP 8 Unmodified _TRFFFFVP_ 0 0 0 REV__HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|34|2|anti-sense REV__HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|34|2|anti-sense MSMS UPN47_class_I_Rep_2 3 530.784423828125 2 530.78437 1059.55419 NaN NaN NaN NaN NaN NaN NaN 26.161 1 29.655 29.155 30.155 3.4945 0 0 0 0.40738 1 3743 3743 0.79363 0 1 + 45409 23450 28666 28679 52278 52278 0.026792695194444605 TRFFKNLA 8 Unmodified _TRFFKNLA_ 0 0 0 nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-2|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3;ENSG00000119977|ENST00000371217|TCTN3 nc|ENSG00000119977|Q6NUS6-3|TCTN3 nc|ENSG00000119977|Q6NUS6-3|TCTN3 MSMS UPN48_class_I_Rep_1 5 498.8174743652344 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 69.157 1 72.612 72.112 73.112 3.4548 0 0 0 0.40746 1 16022 16022 0.69038 0 1 45410 2310 28667 28680 52279 52279 0.05729483888319464 TRFKYTGLLL 10 Unmodified _TRFKYTGLLL_ 0 0 0 REV__L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|142|2|anti-sense REV__L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|142|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 606.3604736328125 2 606.360973 1210.70739 0.52869 0.00032058 -0.28646 -0.0001737 0.24223 0.00014688 606.3605077642968 109.37 0.50051 112.97 112.92 113.42 3.6046 96 63 2 0 0 0 0.56078 1 27031 27031 3.2813 0 1 1584100 + 45411 27596 28668 28681 52280 52280 0.11046839845243994 TRGHEYRQGT 10 Unmodified _TRGHEYRQGT_ 0 0 0 REV__ENSG00000198093|ENST00000354957|ZNF649 REV__ENSG00000198093|ENST00000354957|ZNF649 MSMS UPN47_class_I_Rep_1 2 602.7958984375 2 602.794518 1203.57448 NaN NaN NaN NaN NaN NaN NaN 35.604 1 39.281 38.781 39.781 3.6762 0 0 0 0.53105 1 6550 6550 1.1933 0.59184 1 + 45412 21112 28669 28682 52281 52281 -0.019162115587278095 TRGKHVSI 8 Unmodified _TRGKHVSI_ 0 0 0 L1MEf_dup1397|chr2:135756649-135757765:-|1.2561570340750652|0.099184096600789|3.66|151.0|14|1|sense L1MEf_dup1397|chr2:135756649-135757765:-|1.2561570340750652|0.099184096600789|3.66|151.0|14|1|sense L1MEf_dup1397|chr2:135756649-135757765:-|1.2561570340750652|0.099184096600789|3.66|151.0|14|1|sense MSMS UPN48_class_I_Rep_3 7 449.2666015625 2 449.266876 896.519199 NaN NaN NaN NaN NaN NaN NaN 80.881 1 84.545 84.045 85.045 3.6635 0 0 0 0.40472 1 19141 19141 4.3292 0 1 45413 13248 28670 28683 52282 52282 0.06680026711467235 TRGKRAVIF 9 Unmodified _TRGKRAVIF_ 0 0 0 REV__L1ME3Cz_dup8964|chr12:118228452-118228922:-|1.5131866949306358|0.0065749026956916|7.85|151.0|2|1|sense REV__L1ME3Cz_dup8964|chr12:118228452-118228922:-|1.5131866949306358|0.0065749026956916|7.85|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 524.3131103515625 2 524.324725 1046.6349 NaN NaN NaN NaN NaN NaN NaN 43.996 1 47.354 46.854 47.854 3.358 0 0 0 0.40038 1 9131 9131 0.6015 0 1 + 45414 28133 28671 28684 52283 52283 0.11344550562307631 TRGPILYR 8 Unmodified _TRGPILYR_ 0 0 0 L1MB2_dup255|chr1:90986776-90989267:+|3.107865481237544|0.1466926585025369|4.41|151.0|20|1|sense L1MB2_dup255|chr1:90986776-90989267:+|3.107865481237544|0.1466926585025369|4.41|151.0|20|1|sense L1MB2_dup255|chr1:90986776-90989267:+|3.107865481237544|0.1466926585025369|4.41|151.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.2901611328125 2 488.290351 974.566149 0.2632 0.00012852 0.36279 0.00017715 0.62599 0.00030567 488.29038920639283 108.73 0.3558 112.36 112.26 112.62 3.6355 45 32 2 0 0 0 0.82752 1 26767 26767 12.532 0 1 3781500 45415 10225 28672 28685 52284 52284 0.0778488626260696 TRGQLQLPVIS 11 Unmodified _TRGQLQLPVIS_ 0 0 0 LTR8_dup1009|chr5:80133656-80134203:-|1.1073663556109397|0.0337335521721313|5.04|150.0|20|3|sense LTR8_dup1009|chr5:80133656-80134203:-|1.1073663556109397|0.0337335521721313|5.04|150.0|20|3|sense LTR8_dup1009|chr5:80133656-80134203:-|1.1073663556109397|0.0337335521721313|5.04|150.0|20|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 606.8626708984375 2 606.358962 1210.70337 0.47938 0.00029068 3.9168 0.002375 4.3962 0.0026657 606.3608043689765 36.038 0.054897 36.038 36.007 36.062 0 10 4 3 0 0 0 22.551 1 6625 6625 2.7352 0 1 147240 45416 15711 28673 28686 52285 52285 0.10644750351502807 TRGQRIFVQG 10 Unmodified _TRGQRIFVQG_ 0 0 0 nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS UPN47_class_I_Rep_1 2 581.3292846679688 2 581.327996 1160.64144 NaN NaN NaN NaN NaN NaN NaN 67.103 1 70.464 69.964 70.964 3.3611 0 0 0 0.53105 1 16116 16116 2.7352 0.89096 1 45417 4548 28674 28687 52286 52286 0.06754443723048098 TRGRARLL 8 Unmodified _TRGRARLL_ 0 0 0 REV__ENST00000564426.5_1_16:2203418-2203928:+|nuORF REV__ENST00000564426.5_1_16:2203418-2203928:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.7947692871094 2 471.801417 941.588282 NaN NaN NaN NaN NaN NaN NaN 45.748 1 49.448 48.948 49.948 3.6999 0 0 0 0.4044 1 9639 9639 4.756 0 1 + 45418 23048 28675 28688 52287 52287 0.11515110731045297 TRGRAVLVV 9 Unmodified _TRGRAVLVV_ 0 0 0 REV__ENSG00000156599|ENST00000287169|ZDHHC5 REV__ENSG00000156599|ENST00000287169|ZDHHC5 MULTI-MSMS UPN47_class_I_Rep_2 3 485.81201171875 2 485.811451 969.608348 0.31645 0.00015373 0.85889 0.00041726 1.1753 0.00057099 485.8117978854188 82.544 0.16364 85.942 85.832 85.996 3.3984 37 21 2 0 0 0 0.24936 1 20554 20554 17.113 3.605 1 983700 + 45419 19799 28676 28689 52288 52288 0.12232861670997863 TRGSIFPPPDG 11 Unmodified _TRGSIFPPPDG_ 0 0 0 MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|9|1|sense MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|9|1|sense MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 572.2945556640625 2 572.293288 1142.57202 0.045692 2.6149E-05 -0.13315 -7.62E-05 -0.087456 -5.005E-05 572.2931793302678 35.441 0.87403 38.852 38.532 39.406 3.4114 85 55 2 0 0 0 0.65559 1 6481 6481 2.7352 2.7352 1 135880 45420 16119 28677 28690 52289 52289 0.006439399836153825 TRGSLLPEL 9 Unmodified _TRGSLLPEL_ 0 0 0 LTR17_dup481|chr9:76469231-76469990:+|2.002008312508897|0.1403507948633415|3.83|151.0|36|2|anti-sense LTR17_dup481|chr9:76469231-76469990:+|2.002008312508897|0.1403507948633415|3.83|151.0|36|2|anti-sense LTR17_dup481|chr9:76469231-76469990:+|2.002008312508897|0.1403507948633415|3.83|151.0|36|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.7978820800781 2 493.287474 984.560395 0.35155 0.00017342 -0.75111 -0.00037051 -0.39956 -0.0001971 493.2870457096689 55.704 0.17846 59.014 58.873 59.051 3.3102 15 10 2 0 0 0 0.49187 1 12695 12695 1.4819 0 1 33372 45421 15581 28678 28691 52290 52290 0.06749742960278127 TRHELGWP 8 Unmodified _TRHELGWP_ 0 0 0 REV__ENST00000306585.8_1_16:69152191-69152308:-|nuORF REV__ENST00000306585.8_1_16:69152191-69152308:-|nuORF MSMS UPN48_class_I_Rep_3 7 498.2569274902344 2 498.256508 994.498464 NaN NaN NaN NaN NaN NaN NaN 37.229 1 40.892 40.392 41.392 3.663 0 0 0 0.40738 1 6251 6251 0.79363 0 1 + 45422 21689 28679 28692 52291 52291 0.0009943633181137557 TRHEWVFPIV 10 Unmodified _TRHEWVFPIV_ 0 0 0 REV__MER41-int_dup379|chr4:87366157-87368035:+|2.5669854335487456|0.0603272140569104|5.41|151.0|47|2|sense REV__MER41-int_dup379|chr4:87366157-87368035:+|2.5669854335487456|0.0603272140569104|5.41|151.0|47|2|sense MSMS UPN48_class_I_Rep_1 5 642.3485717773438 2 642.348397 1282.68224 NaN NaN NaN NaN NaN NaN NaN 49.336 1 52.861 52.361 53.361 3.5246 0 0 0 0.53105 1 9959 9959 0.45834 0 1 + 45423 31292 28680 28693 52292 52292 0.05220785042661191 TRHLKIVW 8 Unmodified _TRHLKIVW_ 0 0 0 MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|36|1|anti-sense MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|36|1|anti-sense MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|36|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8216552734375 2 526.821818 1051.62908 0.057025 3.0042E-05 -0.23161 -0.00012202 -0.17458 -9.1974E-05 526.8215369006962 29.322 0.093946 29.322 29.281 29.375 0 11 5 3 0 0 0 0.82752 1 4636 4636 0.69038 0 1 265320 45424 15844 28681 28694 52293 52293 0.10533452050640335 TRHTHILL 8 Unmodified _TRHTHILL_ 0 0 0 L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|24|1|sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|24|1|sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|24|1|sense MSMS UPN47_class_I_Rep_2 3 495.77996826171875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.938 1 87.349 86.849 87.849 3.4116 0 0 0 0.40581 1 20933 20933 2.8892 0 1 45425 11136 28682 28695 52294 52294 0.08184288636891779 TRHTHILL 8 Unmodified _TRHTHILL_ 0 0 0 L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|24|1|sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|24|1|sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|24|1|sense MSMS UPN47_class_I_Rep_2 3 495.7803649902344 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 84.072 1 87.483 86.983 87.983 3.4116 0 0 0 0.40581 1 20967 20967 2.8892 0 1 45426 11136 28682 28695 52295 52295 0.08184288636891779 TRHYSEDEP 9 Unmodified _TRHYSEDEP_ 0 0 0 REV__L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|52|2|sense REV__L1PB1_dup3980|chr5:37528628-37533313:-|2.7797742052888204|0.058673504851701|5.57|151.0|52|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.2485961914062 2 567.246535 1132.47852 0.34225 0.00019414 -0.1134 -6.4328E-05 0.22884 0.00012981 567.2464714212965 27.653 0.41191 31.408 31.246 31.658 3.7555 61 45 2 0 0 0 0.48643 1 3707 3707 2.0598 0 1 71667 + 45427 30400 28683 28696 52296 52296 -0.08242404189468289 TRIGQILI 8 Unmodified _TRIGQILI_ 0 0 0 nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR nc|ENSG00000151687|Q7Z5J8-2|ANKAR nc|ENSG00000151687|Q7Z5J8-2|ANKAR MULTI-MSMS UPN48_class_I_Rep_2 6 457.2952880859375 2 457.295102 912.575651 0.27521 0.00012585 -0.18623 -8.5161E-05 0.088982 4.0691E-05 457.2949523842663 57.297 0.80341 60.811 60.451 61.254 3.5142 151 66 3 0 0 0 0.82752 1 12444 12444 13.906 0 1 655170 45428 3598 28684 28697 52297 52297 0.11586654548136721 TRILSKFKS 9 Unmodified _TRILSKFKS_ 0 0 0 REV__ENSG00000253548|ENST00000518817|PYDC2 REV__ENSG00000253548|ENST00000518817|PYDC2 MSMS UPN48_class_I_Rep_1 5 540.3342895507812 2 540.332216 1078.64988 NaN NaN NaN NaN NaN NaN NaN 85.862 1 89.468 88.968 89.968 3.6059 0 0 0 0.3967 1 20553 20553 1.4819 0 1 + 45429 21366 28685 28698 52298 52298 0.11369997639667417 TRIPARHL 8 Unmodified _TRIPARHL_ 0 0 0 REV__RARA-PML|2|fusion REV__RARA-PML|2|fusion MSMS UPN47_class_I_Rep_2 3 482.2967224121094 2 482.295968 962.577383 NaN NaN NaN NaN NaN NaN NaN 36.407 1 39.818 39.318 40.318 3.4114 0 0 0 0.40746 1 6827 6827 0.69038 0 1 + 45430 31995 28686 28699 52299 52299 0.09459708356746432 TRIRVIKKII 10 Unmodified _TRIRVIKKII_ 0 0 0 REV__LTR13A_dup170|chr19:52931631-52932596:+|1.1930724830117905|0.0377058835817276|4.98|151.0|1|1|sense REV__LTR13A_dup170|chr19:52931631-52932596:+|1.1930724830117905|0.0377058835817276|4.98|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 620.4349975585938 2 620.434807 1238.85506 NaN NaN NaN NaN NaN NaN NaN 98.341 1 98.341 97.841 98.841 0 0 0 0 0.53105 1 23940 23940 0 0 1 + 45431 30842 28687 28700 52300 52300 0.24518776169907142 TRITPKGKI 9 Unmodified _TRITPKGKI_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS UPN48_class_I_Rep_3 7 507.32666015625 2 507.326934 1012.63931 0.19124 9.7023E-05 -0.41575 -0.00021092 -0.22451 -0.0001139 507.3266888535278 44.033 0.86243 47.672 47.199 48.062 3.6385 97 55 2 0 0 0 0.33908 1 8267 8267 11.495 0.67078 1 156030 45432 2600 28688 28701 52301 52301 0.1335001498522388 TRIVKLKKPVG 11 Unmodified _TRIVKLKKPVG_ 0 0 0 REV__L1M6_dup1753|chr5:81458785-81459484:-|1.024833063631432|0.051313053792699|4.32|151.0|43|2|anti-sense REV__L1M6_dup1753|chr5:81458785-81459484:-|1.024833063631432|0.051313053792699|4.32|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_3 4 619.9215698242188 2 619.91899 1237.82343 NaN NaN NaN NaN NaN NaN NaN 89.666 1 93.063 92.563 93.563 3.3976 0 0 0 0.38417 1 22480 22480 0.35063 0 1 + 45433 24715 28689 28702 52302 52302 0.21402783415919657 TRKADTALA 9 Unmodified _TRKADTALA_ 0 0 0 nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4 nc|ENSG00000164164|Q01804-5|OTUD4 nc|ENSG00000164164|Q01804-5|OTUD4 MULTI-SECPEP UPN47_class_I_Rep_2 3 473.8055419921875 2 473.769448 945.524344 -0.29192 -0.0001383 -0.64635 -0.00030622 -0.93828 -0.00044453 473.7689367636546 14.24 0.28503 17.627 17.505 17.79 3.3871 74 34 3 0 0 0 0.12551 1 499 499 0 0 1 125700 45434 4091 28690 28703 52303 52303 0.049402857833911185 TRKFKSIFP 9 Unmodified _TRKFKSIFP_ 0 0 0 REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|105|2|sense REV__L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|105|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3349609375 2 562.334759 1122.65496 0.2483 0.00013963 0.042249 2.3758E-05 0.29055 0.00016339 562.3347155515736 32.867 0.24171 32.867 32.761 33.003 0 19 14 2 0 0 0 0.48846 1 5696 5696 1.8442 0 1 454570 + 45435 29050 28691 28704 52304 52304 0.09854301502264207 TRKKFYLA 8 Unmodified _TRKKFYLA_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A;REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MSMS UPN47_class_I_Rep_2 3 513.8087158203125 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 44.856 1 48.212 47.712 48.712 3.3556 0 0 0 0.40738 1 9396 9396 0.79363 0 1 + 45436 19039;18050 28692 28705 52305 52305 0.09042343439477918 TRKKKKIIA 9 Unmodified _TRKKKKIIA_ 0 0 0 REV__L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|55|3|sense REV__L1MA4_dup1508|chr3:23223490-23225765:-|2.514533941373564|0.0853284858512913|4.88|151.0|55|3|sense MSMS UPN46_class_I_Rep_3 1 543.3818359375 2 543.3795 1084.74445 NaN NaN NaN NaN NaN NaN NaN 97.815 1 97.815 97.315 98.315 0 0 0 0 0.4029 1 23811 23811 0 0 1 + 45437 25135 28693 28706 52306 52306 0.20546556181670894 TRKKKKKKK 9 Unmodified _TRKKKKKKK_ 0 0 0 ENST00000308713.9_3_16:29910378-29910510:-|nuORF REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 586.9196166992188 2 586.919324 1171.8241 NaN NaN NaN NaN NaN NaN NaN 110.49 1 110.49 109.99 110.99 0 0 0 0 0.4029 1 27213 27213 0 0 1 45438 28472 28694 28707 52307 52307 0.24505622855622278 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 643.4627075195312 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 24.103 1 24.103 23.603 24.603 0 0 0 0 0.53105 1 3121 3121 0 0 1 45439 28472 28695 28708 52308 52308 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 643.4632568359375 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 31.209 1 31.209 30.709 31.709 0 0 0 0 0.53105 1 5184 5184 0 0 1 45440 28472 28695 28708 52309 52309 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 643.4629516601562 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 39.628 1 39.628 39.128 40.128 0 0 0 0 0.53105 1 7629 7629 0 0 1 45441 28472 28695 28708 52310 52310 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN46_class_I_Rep_3 1 643.463134765625 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 110.37 1 110.37 109.87 110.87 0 0 0 0 0.53105 1 27179 27179 0 0 1 45442 28472 28695 28708 52311 52311 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 643.4632568359375 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 110.81 1 114.33 113.83 114.83 3.5271 0 0 0 0.53105 1 26974 26974 0 0 1 45443 28472 28695 28708 52312 52312 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 643.2982177734375 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 38.064 1 41.781 41.281 42.281 3.7164 0 0 0 0.53105 1 6587 6587 0 0 1 45444 28472 28695 28708 52313 52313 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 643.4641723632812 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 38.335 1 42.052 41.552 42.552 3.7164 0 0 0 0.53105 1 6668 6668 0 0 1 45445 28472 28695 28708 52314 52314 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 643.4637451171875 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 37.946 1 41.606 41.106 42.106 3.6595 0 0 0 0.53105 1 6458 6458 0 0 1 45446 28472 28695 28708 52315 52315 0.2771015395253471 TRKKKKKKKI 10 Unmodified _TRKKKKKKKI_ 0 0 0 REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense REV__L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 643.4622192382812 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 110.63 1 114.3 113.8 114.8 3.6654 0 0 0 0.53105 1 26254 26254 0 0 1 45447 28472 28695 28708 52316 52316 0.2771015395253471 TRKKKKLK 8 Unmodified _TRKKKKLK_ 0 0 0 REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|14|1|sense REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 515.3661499023438 2 515.366393 1028.71823 NaN NaN NaN NaN NaN NaN NaN 108.52 1 108.52 108.02 109.02 0 0 0 0 0.40746 1 26544 26544 0.69038 0 1 + 45448 24824 28696 28709 52317 52317 0.20502287010162945 TRKKTRKRR 9 Unmodified _TRKKTRKRR_ 0 0 0 ENST00000361675.6_2_7:134618055-134618145:+|nuORF ENST00000361675.6_2_7:134618055-134618145:+|nuORF ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS UPN46_class_I_Rep_3 1 615.404296875 2 615.404904 1228.79525 NaN NaN NaN NaN NaN NaN NaN 38.922 1 38.922 38.422 39.422 0 0 0 0 0.40098 1 7445 7445 0.45834 0 1 45449 6332 28697 28710 52318 52318 0.19000898279182366 TRKNQGLE 8 Unmodified _TRKNQGLE_ 0 0 0 ENST00000265602.10_1_6:135816975-135818777:-|nuORF ENST00000265602.10_1_6:135816975-135818777:-|nuORF ENST00000265602.10_1_6:135816975-135818777:-|nuORF MSMS UPN47_class_I_Rep_3 4 473.2597961425781 2 473.259248 944.503943 NaN NaN NaN NaN NaN NaN NaN 52.733 1 55.937 55.437 56.437 3.2044 0 0 0 0.39819 1 11839 11839 8.5933 0 1 45450 5997 28698 28711 52319 52319 0.029471151236066362 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.3510131835938 2 579.364913 1156.71527 0.49204 0.00028507 -2.4572 -0.0014236 -1.9652 -0.0011386 579.3643605084915 109.29 0.53153 112.89 112.77 113.3 3.6046 137 66 3 0 0 0 0.46869 1 26960 26960 3.9444 0 1 3291700 45451 12897 28699 28712 52320 52320 0.14318411885369642 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 579.3524169921875 2 579.364913 1156.71527 0.63491 0.00036785 -2.8617 -0.001658 -2.2268 -0.0012901 579.3638937216281 109.29 0.45705 112.82 112.68 113.13 3.5307 129 61 3 0 0 0 0.46869 1 26619 26619 3.9444 0 1 2607000 45452 12897 28699 28712 52321 52321 0.14318411885369642 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 579.3643188476562 2 579.364913 1156.71527 0.50628 0.00029332 -1.3875 -0.00080385 -0.88119 -0.00051053 579.364992934907 109.31 0.5169 112.85 112.71 113.23 3.5347 132 69 3 0 0 0 0.46869 3 26837 26837;26851;26880 3.9444 0 1 3873100 45453 12897 28699 28712 52322;52323;52324 52322 0.14318411885369642 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.351806640625 2 579.364913 1156.71527 0.40411 0.00023413 -2.0657 -0.0011968 -1.6616 -0.00096269 579.3645459157616 109.31 0.49127 112.94 112.74 113.23 3.6321 123 61 3 0 0 0 0.46869 1 26537 26537 3.9444 0 1 2596600 45454 12897 28699 28712 52325 52325 0.14318411885369642 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 579.364501953125 2 579.364913 1156.71527 0.40411 0.00023413 -2.0657 -0.0011968 -1.6616 -0.00096269 579.3645459157616 109.31 0.49127 112.94 112.74 113.23 3.6321 123 61 3 0 0 0 0.12321 1 26515 26515 3.9444 0 1 2596600 45455 12897 28699 28712 52326 52326 0.14318411885369642 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.353271484375 2 579.364913 1156.71527 0.47916 0.00027761 -1.8289 -0.0010596 -1.3497 -0.00078196 579.3648586653136 109.29 0.35269 112.97 112.81 113.17 3.6715 96 45 3 0 0 0 0.46869 3 26001 26001;26013;26020 3.9444 0 1 2743900 45456 12897 28699 28712 52327;52328;52329 52327 0.14318411885369642 TRKRNKNKL 9 Unmodified _TRKRNKNKL_ 0 0 0 L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense L1ME4b_dup17326|chr15:63578642-63579271:+|3.2543735305528894|0.1523576129242803|4.42|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.3646240234375 2 579.364913 1156.71527 0.48555 0.00028131 -2.178 -0.0012618 -1.6924 -0.00098052 579.3643226227822 109.24 0.40254 112.91 112.8 113.2 3.6751 123 54 3 0 0 0 0.46869 1 25932 25932 3.9444 0 1 3072300 45457 12897 28699 28712 52330 52330 0.14318411885369642 TRKTKSLDL 9 Unmodified _TRKTKSLDL_ 0 0 0 L1M4a2_dup666|chr6:4799739-4801686:-|2.604670318341493|0.0246435347911555|6.72|151.0|6|1|sense L1M4a2_dup666|chr6:4799739-4801686:-|2.604670318341493|0.0246435347911555|6.72|151.0|6|1|sense L1M4a2_dup666|chr6:4799739-4801686:-|2.604670318341493|0.0246435347911555|6.72|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.31982421875 2 531.319306 1060.62406 0.42168 0.00022405 -0.27241 -0.00014473 0.14927 7.9311E-05 531.3190962834177 86.163 0.40251 89.778 89.594 89.996 3.6153 79 47 2 0 0 0 0.49187 1 21511 21511 1.4819 0 1 98515 45458 8981 28700 28713 52331 52331 0.0961710339736328 TRKTKSLDL 9 Unmodified _TRKTKSLDL_ 0 0 0 L1M4a2_dup666|chr6:4799739-4801686:-|2.604670318341493|0.0246435347911555|6.72|151.0|6|1|sense L1M4a2_dup666|chr6:4799739-4801686:-|2.604670318341493|0.0246435347911555|6.72|151.0|6|1|sense L1M4a2_dup666|chr6:4799739-4801686:-|2.604670318341493|0.0246435347911555|6.72|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 531.3193359375 2 531.319306 1060.62406 0.52645 0.00027971 -0.62793 -0.00033363 -0.10148 -5.3919E-05 531.3188222148808 85.868 0.62102 89.638 89.347 89.968 3.7701 119 73 2 0 0 0 0.49187 1 20414 20414 1.4819 0 1 205700 45459 8981 28700 28713 52332 52332 0.0961710339736328 TRKVRGEGRGL 11 Unmodified _TRKVRGEGRGL_ 0 0 0 REV__L1M1_dup847|chr2:64000160-64002429:-|3.4586797297157084|0.082810141889392|5.38|151.0|34|2|sense REV__L1M1_dup847|chr2:64000160-64002429:-|3.4586797297157084|0.082810141889392|5.38|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 614.8670654296875 2 614.865277 1227.716 NaN NaN NaN NaN NaN NaN NaN 66.006 1 66.006 65.506 66.506 0 0 0 0 0.38417 1 14951 14951 0.96228 0.43751 1 + 45460 24159 28701 28714 52333 52333 0.11125206534416066 TRKWRRRRRRR 11 Unmodified _TRKWRRRRRRR_ 0 0 0 ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 421.5183410644531 4 421.517628 1682.04141 0.079311 3.3431E-05 1.8964 0.00079935 1.9757 0.00083278 421.518559271699 83.139 0.31124 86.82 86.756 87.067 3.6814 86 39 3 0 0 0 0.68502 1 19776 19776 0.073264 0.073264 1 17934000 45461 6091 28702 28715 52334 52334 0.2276683090158258 TRKWRRRRRRR 11 Unmodified _TRKWRRRRRRR_ 0 0 0 ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 4 421.517628 1682.04141 -0.10099 -4.2568E-05 1.1394 0.00048028 1.0384 0.00043771 421.5181148486807 83.467 0.18504 87.054 86.999 87.184 3.5871 0.092469 7.602E-06 NaN 0.073264 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 382560 45462 6091 28702 28715 0.2276683090158258 TRKWRRRRRRR 11 Unmodified _TRKWRRRRRRR_ 0 0 0 ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 4 421.517628 1682.04141 0.13776 5.8066E-05 1.0848 0.00045725 1.2225 0.00051531 421.51798170638784 83.304 0.24496 87.011 86.902 87.147 3.7066 0.049056 -8.4525E-05 NaN 0.073264 58 32 2 NaN NaN NaN NaN 0 NaN NaN 0 188200 45463 6091 28702 28715 0.2276683090158258 TRLFSQQIGQ 10 Unmodified _TRLFSQQIGQ_ 0 0 0 REV__HAL1b_dup2116|chr6:147347314-147347671:+|1.1399517640810548|0.464530777714131|1.3|151.0|12|3|sense REV__HAL1b_dup2116|chr6:147347314-147347671:+|1.1399517640810548|0.464530777714131|1.3|151.0|12|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.8214111328125 2 589.319837 1176.62512 0.48623 0.00028655 -0.79209 -0.0004668 -0.30586 -0.00018025 589.3192017025458 50.743 0.42351 50.743 50.538 50.962 0 65 47 2 0 0 0 0.56078 1 10736 10736 3.2813 0 1 279440 + 45464 23448 28703 28716 52335 52335 0.0438731776628174 TRLFSQQIGQ 10 Unmodified _TRLFSQQIGQ_ 0 0 0 REV__HAL1b_dup2116|chr6:147347314-147347671:+|1.1399517640810548|0.464530777714131|1.3|151.0|12|3|sense REV__HAL1b_dup2116|chr6:147347314-147347671:+|1.1399517640810548|0.464530777714131|1.3|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 589.320556640625 2 589.319837 1176.62512 NaN NaN NaN NaN NaN NaN NaN 51.199 1 51.199 50.699 51.699 0 0 0 0 0.53105 1 10867 10867 1.3295 0 1 + 45465 23448 28703 28716 52336 52336 0.0438731776628174 TRLKKKKK 8 Unmodified _TRLKKKKK_ 0 0 0 AluJb_dup14299|chr2:55298630-55298903:+|1.7533773040446907|0.2876788823710543|2.61|151.0|8|2|sense AluJb_dup14299|chr2:55298630-55298903:+|1.7533773040446907|0.2876788823710543|2.61|151.0|8|2|sense AluJb_dup14299|chr2:55298630-55298903:+|1.7533773040446907|0.2876788823710543|2.61|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 515.3662109375 2 515.366393 1028.71823 NaN NaN NaN NaN NaN NaN NaN 108.11 1 111.65 111.15 112.15 3.5382 0 0 0 0.40798 1 26429 26429 0 0 1 45466 33 28704 28717 52337 52337 0.20502287010162945 TRLKKRKK 8 Unmodified _TRLKKRKK_ 0 0 0 L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|115|2|anti-sense L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|115|2|anti-sense L1MEc_dup5858|chr5:54163395-54165651:-|1.8711879731492007|0.0782908086561715|4.58|151.0|115|2|anti-sense MSMS UPN48_class_I_Rep_1 5 529.3689575195312 2 529.369467 1056.72438 NaN NaN NaN NaN NaN NaN NaN 30.149 1 33.691 33.191 34.191 3.542 0 0 0 0.40798 1 4289 4289 0 0 1 45467 13112 28705 28718 52338 52338 0.1982880524169559 TRLKRLLL 8 Unmodified _TRLKRLLL_ 0 0 0 REV__L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|48|3|anti-sense REV__L1ME2_dup7545|chrX:118584057-118584663:-|1.515763650471898|0.0381213990231478|5.31|151.0|48|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 506.853271484375 2 506.853119 1011.69168 0.27251 0.00013812 0.16475 8.3504E-05 0.43726 0.00022163 506.8530949633756 108.24 0.53003 111.92 111.67 112.2 3.6813 144 54 4 0 0 0 0.82752 1 25560 25560 0.69038 0 1 60967000 + 45468 27884 28706 28719 52339 52339 0.18630598118852504 TRLKTWDL 8 Unmodified _TRLKTWDL_ 0 0 0 ENST00000544158.2_1_19:36259262-36259406:+|nuORF ENST00000544158.2_1_19:36259262-36259406:+|nuORF ENST00000544158.2_1_19:36259262-36259406:+|nuORF MSMS UPN48_class_I_Rep_1 5 516.7971801757812 2 516.795466 1031.57638 NaN NaN NaN NaN NaN NaN NaN 25.567 1 29.134 28.634 29.634 3.5667 0 0 0 0.40746 1 2998 2998 0.69038 0 1 45469 7366 28707 28720 52340 52340 0.06185449197187154 TRLLVLHH 8 Unmodified _TRLLVLHH_ 0 0 0 REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 494.8058166503906 2 494.806168 987.597784 -0.27635 -0.00013674 -1.3102 -0.00064829 -1.5865 -0.00078503 494.8053897966269 33.439 0.5593 37.137 36.864 37.423 3.6983 47 36 2 0 0 0 0.82752 1 5939 5939 0.79363 0 1 45241 + 45470 21952 28708 28721 52341 52341 0.10348879016555657 TRLLVLHH 8 Unmodified _TRLLVLHH_ 0 0 0 REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 494.8056640625 2 494.806168 987.597784 -0.13248 -6.5552E-05 -0.93473 -0.00046251 -1.0672 -0.00052806 494.80570865934334 33.675 0.49523 37.115 36.91 37.406 3.4398 47 30 2 0 0 0 0.82752 2 5982 5982;6030 0.79363 0 1 59699 + 45471 21952 28708 28721 52342;52343 52342 0.10348879016555657 TRLMGLLV 8 Unmodified _TRLMGLLV_ 0 0 0 L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|58|2|anti-sense L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|58|2|anti-sense L1M3b_dup334|chr9:34197850-34199057:-|4.556184022162895|0.04689571550313|6.6|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_3 7 451.7800598144531 2 451.778231 901.541908 NaN NaN NaN NaN NaN NaN NaN 77.638 1 81.24 80.74 81.74 3.6016 0 0 0 0.40738 1 18349 18349 0.79363 0 1 45472 8786 28709 28722 52344 52344 0.08719909784747415 TRLMHLAA 8 Unmodified _TRLMHLAA_ 0 0 0 REV__nc|ENSG00000174791|Q13671-2|RIN1 REV__nc|ENSG00000174791|Q13671-2|RIN1 MSMS UPN47_class_I_Rep_1 2 456.7922668457031 2 456.75783 911.501106 NaN NaN NaN NaN NaN NaN NaN 34.535 1 38.221 37.721 38.721 3.6859 0 0 0 0.40738 1 6226 6226 0.79363 0 1 + 45473 20534 28710 28723 52345 52345 0.041815684650941876 TRLNRWIR 8 Unmodified _TRLNRWIR_ 0 0 0 L1ME5_dup2584|chr14:73398604-73399232:+|1.6971027909703948|0.0487700366283716|5.12|151.0|2|1|sense L1ME5_dup2584|chr14:73398604-73399232:+|1.6971027909703948|0.0487700366283716|5.12|151.0|2|1|sense L1ME5_dup2584|chr14:73398604-73399232:+|1.6971027909703948|0.0487700366283716|5.12|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.8312377929688 2 557.833249 1113.65194 -0.40033 -0.00022332 -1.3886 -0.00077462 -1.789 -0.00099794 557.8322405457914 15.9 0.35666 19.266 19.138 19.495 3.3659 46 41 2 0 0 0 0.82752 1 897 897 0.69038 0 1 24952 45474 12969 28711 28724 52346 52346 0.099664711681271 TRLQFVHP 8 Unmodified _TRLQFVHP_ 0 0 0 REV__ENST00000487574.1_1_2:113953766-113955491:+|nuORF REV__ENST00000487574.1_1_2:113953766-113955491:+|nuORF MSMS UPN48_class_I_Rep_1 5 499.282470703125 2 499.282526 996.550499 NaN NaN NaN NaN NaN NaN NaN 36.35 1 39.857 39.357 40.357 3.507 0 0 0 0.40738 1 6057 6057 0.79363 0 1 + 45475 18835 28712 28725 52347 52347 0.05208599745560605 TRLRGPQR 8 Unmodified _TRLRGPQR_ 0 0 0 REV__ENST00000237536.8_2_20:35412206-35412971:-|nuORF REV__ENST00000237536.8_2_20:35412206-35412971:-|nuORF MSMS UPN47_class_I_Rep_1 2 492.2970275878906 2 492.296499 982.578445 NaN NaN NaN NaN NaN NaN NaN 73.149 1 76.535 76.035 77.035 3.3861 0 0 0 0.40746 1 17944 17944 0.69038 0 1 + 45476 21501 28713 28726 52348 52348 0.08645922725656874 TRLRIIKL 8 Unmodified _TRLRIIKL_ 0 0 0 nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|36|1|sense;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG821|P63135|ERVK-7_pol nc|ENSG801|P63132|HERVK_113_pro nc|ENSG801|P63132|HERVK_113_pro MULTI-MSMS UPN47_class_I_Rep_1 2 506.8531494140625 2 506.853119 1011.69168 0.33749 0.00017106 -0.093251 -4.7264E-05 0.24424 0.00012379 506.85294205200853 108.32 0.79624 111.96 111.68 112.48 3.6355 201 79 4 0 0 0 0.82752 1 26615 26615 0.69038 0 1 20784000 45477 16864 28714 28727 52349 52349 0.18630598118829766 TRLRKVLLFLV 11 Unmodified _TRLRKVLLFLV_ 0 0 0 L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|52|2|anti-sense L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|52|2|anti-sense L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_2 6 453.30517578125 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 118.89 1 122.55 122.05 123.05 3.6652 0 0 0 0.38417 1 28516 28516 0.094841 0 1 45478 12971 28715 28728 52350 52350 0.23275331858394566 TRLRNVGV 8 Unmodified _TRLRNVGV_ 0 0 0 ENSG00000197953|ENST00000356517|AADACL2 ENSG00000197953|ENST00000356517|AADACL2 ENSG00000197953|ENST00000356517|AADACL2 MULTI-MSMS UPN48_class_I_Rep_2 6 457.78009033203125 2 457.780151 913.545748 0.16843 7.7102E-05 0.077042 3.5268E-05 0.24547 0.00011237 457.7800346919809 81.003 0.27521 84.66 84.494 84.77 3.6567 51 35 2 0 0 0 0.82752 1 19225 19225 4.756 0 1 188840 45479 5397 28716 28729 52351 52351 0.08551715602811782 TRLRNVGV 8 Unmodified _TRLRNVGV_ 0 0 0 ENSG00000197953|ENST00000356517|AADACL2 ENSG00000197953|ENST00000356517|AADACL2 ENSG00000197953|ENST00000356517|AADACL2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 457.780151 913.545748 -0.12935 -5.9215E-05 -0.5167 -0.00023653 -0.64605 -0.00029575 457.77964604086407 81.22 0.10848 84.543 84.442 84.551 3.3231 -0.058374 -0.00053278 NaN 4.756 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 45537 45480 5397 28716 28729 0.08551715602811782 TRLSIRLAY 9 Unmodified _TRLSIRLAY_ 0 0 0 L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|106|3|sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|106|3|sense L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|106|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.8287353515625 2 546.82984 1091.64513 0.44115 0.00024123 -0.44698 -0.00024442 -0.0058302 -3.1881E-06 546.8294776343552 45.996 0.67265 49.512 49.185 49.857 3.5162 59 46 2 0 0 0 0.41259 1 8999 8999 7.2892 0.56607 1 149090 45481 13983 28717 28730 52352 52352 0.10297113496881138 TRLSLLFC 8 Unmodified _TRLSLLFC_ 0 0 0 ENST00000361413.7_1_17:6538430-6538463:-|nuORF ENST00000361413.7_1_17:6538430-6538463:-|nuORF ENST00000361413.7_1_17:6538430-6538463:-|nuORF MSMS UPN48_class_I_Rep_1 5 476.7685852050781 2 476.767863 951.521173 NaN NaN NaN NaN NaN NaN NaN 33.448 1 36.968 36.468 37.468 3.5201 0 0 0 0.40527 1 5219 5219 3.5965 0 1 45482 6329 28718 28731 52353 52353 0.043473194050761776 TRMATCPLQAQ 11 Unmodified _TRMATCPLQAQ_ 0 0 0 REV__MSTA-int_dup1333|chr7:130974083-130975650:+|1.5910565974324509|0.381807447355624|2.06|151.0|45|3|sense REV__MSTA-int_dup1333|chr7:130974083-130975650:+|1.5910565974324509|0.381807447355624|2.06|151.0|45|3|sense MSMS UPN46_class_I_Rep_3 1 406.7760009765625 3 407.202247 1218.58491 NaN NaN NaN NaN NaN NaN NaN 68.94 1 68.94 68.44 69.44 0 0 0 0 0.38417 1 15770 15770 0.36667 0 1 + 45483 31862 28719 28732 52354 52354 -0.015636882201761182 TRMEVWHYLQ 10 Unmodified _TRMEVWHYLQ_ 0 0 0 REV__ENSG00000125741|ENST00000263275|OPA3 REV__ENSG00000125741|ENST00000263275|OPA3 MULTI-SECPEP UPN47_class_I_Rep_1 2 454.74462890625 3 454.89229 1361.65504 0.16661 7.5789E-05 0.26858 0.00012217 0.43519 0.00019796 455.226040315383 90.126 0.03611 93.816 93.797 93.833 3.6899 7 4 2 0 0 0 0.84575 1 22524 22524 0.62683 0.21856 1 35854 + 45484 18839 28720 28733 52355 52355 -0.011320665600351276 TRMEVWHYLQ 10 Unmodified _TRMEVWHYLQ_ 0 0 0 REV__ENSG00000125741|ENST00000263275|OPA3 REV__ENSG00000125741|ENST00000263275|OPA3 MULTI-MATCH UPN46_class_I_Rep_3 1 3 454.89229 1361.65504 0.19835 9.0227E-05 0.40137 0.00018258 0.59972 0.00027281 455.22581946238245 94.056 0.049492 94.056 94.013 94.063 0 0.25605 -0.00062954 NaN 0.62683 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 40703 + 45485 18839 28720 28733 -0.011320665600351276 TRMEVWHYLQ 10 Unmodified _TRMEVWHYLQ_ 0 0 0 REV__ENSG00000125741|ENST00000263275|OPA3 REV__ENSG00000125741|ENST00000263275|OPA3 MULTI-MATCH UPN47_class_I_Rep_3 4 3 454.89229 1361.65504 -0.13762 -6.2602E-05 0.93173 0.00042384 0.79411 0.00036123 455.22644798786365 90.201 0.062668 93.599 93.571 93.634 3.3976 -0.20065 9.4228E-05 NaN 0.62683 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 60276 + 45486 18839 28720 28733 -0.011320665600351276 TRMEVWHYLQ 10 Unmodified _TRMEVWHYLQ_ 0 0 0 REV__ENSG00000125741|ENST00000263275|OPA3 REV__ENSG00000125741|ENST00000263275|OPA3 MULTI-MATCH UPN48_class_I_Rep_1 5 3 454.89229 1361.65504 0.028015 1.2744E-05 1.268 0.00057681 1.296 0.00058955 455.2260502879178 90.102 0.087814 93.728 93.657 93.745 3.6255 -0.071757 0.00055314 NaN 0.62683 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 63455 + 45487 18839 28720 28733 -0.011320665600351276 TRMKYIKK 8 Unmodified _TRMKYIKK_ 0 0 0 REV__LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|1|1|sense REV__LTR13_dup131|chr6:166950876-166951859:-|4.667475234722144|0.2278039501673107|4.36|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 533.8245239257812 2 534.323337 1066.63212 0.37249 0.00019903 1.3174 0.00070391 1.6899 0.00090294 534.8248251329395 54.18 0.37842 57.695 57.49 57.868 3.5143 45 27 2 0 0 0 0.72333 1 11495 11495 2.3027 0 1 69251 + 45488 30829 28721 28734 52356 52356 0.10146959113149023 TRMQSHLQY 9 Unmodified _TRMQSHLQY_ 0 0 0 L1P4_dup271|chr2:44426224-44427601:+|1.427388023561962|0.0389749104588343|5.19|151.0|35|3|sense L1P4_dup271|chr2:44426224-44427601:+|1.427388023561962|0.0389749104588343|5.19|151.0|35|3|sense L1P4_dup271|chr2:44426224-44427601:+|1.427388023561962|0.0389749104588343|5.19|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.2857055664062 2 582.28494 1162.55533 0.39939 0.00023256 -0.35915 -0.00020913 0.040236 2.3429E-05 582.2845145287071 78.065 0.97888 81.494 81.098 82.077 3.4289 210 97 3 0 0 0 0.49026 1 19542 19542 1.6526 0.17072 1 453690 45489 13553 28722 28735 52357 52357 -0.019448841739858835 TRMRHKLL 8 Unmodified _TRMRHKLL_ 0 0 0 MSTA-int_dup341|chr2:168604911-168606680:+|1.0932564544982564|0.0237657303953014|5.52|151.0|73|2|anti-sense MSTA-int_dup341|chr2:168604911-168606680:+|1.0932564544982564|0.0237657303953014|5.52|151.0|73|2|anti-sense MSTA-int_dup341|chr2:168604911-168606680:+|1.0932564544982564|0.0237657303953014|5.52|151.0|73|2|anti-sense MSMS UPN48_class_I_Rep_2 6 527.81787109375 2 527.818753 1053.62295 NaN NaN NaN NaN NaN NaN NaN 32.86 1 36.51 36.01 37.01 3.6497 0 0 0 0.40625 1 5122 5122 2.3027 0.24298 1 45490 16557 28723 28736 52358 52358 0.09828610547469907 TRNLKKCTRK 10 Unmodified _TRNLKKCTRK_ 0 0 0 L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 624.3713989257812 2 624.371881 1246.72921 0.42772 0.00026706 -0.47747 -0.00029812 -0.049746 -3.106E-05 624.3715515160592 92.074 0.5062 95.7 95.52 96.026 3.626 119 71 2 0 0 0 0.52083 1 22151 22151 9.3831 1.2276 1 951930 45491 14932 28724 28737 52359 52359 0.11571321322117001 TRNLKKCTRK 10 Unmodified _TRNLKKCTRK_ 0 0 0 L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 624.37158203125 2 624.371881 1246.72921 0.49407 0.00030848 -0.40601 -0.0002535 0.088064 5.4984E-05 624.873273907941 92.015 0.34362 95.778 95.542 95.886 3.7629 70 49 2 0 0 0 0.54822 1 21908 21908 5.7319 0 1 1253400 45492 14932 28724 28737 52360 52360 0.11571321322117001 TRNLKKCTRK 10 Unmodified _TRNLKKCTRK_ 0 0 0 L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense L1PA8_dup2594|chr5:81658738-81661171:+|1.7346887636866053|0.0667113422665781|4.7|151.0|66|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 624.3723754882812 2 624.371881 1246.72921 0.49401 0.00030845 -0.42221 -0.00026362 0.071795 4.4827E-05 624.3713751799173 92.161 0.20018 95.924 95.838 96.038 3.7629 44 28 2 0 0 0 0.54822 1 21936 21936 5.7319 0 1 1156800 45493 14932 28724 28737 52361 52361 0.11571321322117001 TRNNRNVHQ 9 Unmodified _TRNNRNVHQ_ 0 0 0 L1ME3_dup6709|chr13:21519910-21520436:-|1.3828044347157389|0.1856162467978355|2.9|151.0|10|2|sense L1ME3_dup6709|chr13:21519910-21520436:-|1.3828044347157389|0.1856162467978355|2.9|151.0|10|2|sense L1ME3_dup6709|chr13:21519910-21520436:-|1.3828044347157389|0.1856162467978355|2.9|151.0|10|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 569.3035278320312 2 569.794852 1137.57515 0.046227 2.634E-05 0.92785 0.00052869 0.97408 0.00055503 569.7951394226318 31.334 0.10797 34.803 34.753 34.861 3.4691 11 9 2 0 0 0 0.12462 1 5293 5293 1.8442 0 1 49353 45494 12602 28725 28738 52362 52362 0.01186627880974811 TRNRPVFM 8 Unmodified _TRNRPVFM_ 0 0 0 L1MEg_dup7613|chr8:133480776-133481454:-|1.337878148561356|0.0788509713900895|4.08|151.0|21|3|sense L1MEg_dup7613|chr8:133480776-133481454:-|1.337878148561356|0.0788509713900895|4.08|151.0|21|3|sense L1MEg_dup7613|chr8:133480776-133481454:-|1.337878148561356|0.0788509713900895|4.08|151.0|21|3|sense MSMS UPN47_class_I_Rep_1 2 510.7454833984375 2 510.774011 1019.53347 NaN NaN NaN NaN NaN NaN NaN 33.439 1 37.138 36.638 37.638 3.6983 0 0 0 0.40738 1 5889 5889 0.79363 0 1 45495 13427 28726 28739 52363 52363 0.024483558681026807 TRPINKNQ 8 Unmodified _TRPINKNQ_ 0 0 0 L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|2|1|sense L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|2|1|sense L1MD3_dup2898|chrX:73969908-73970539:-|1.979032013005464|0.2190144768359586|3.18|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 485.763427734375 2 485.775065 969.535577 NaN NaN NaN NaN NaN NaN NaN 116.39 1 119.89 119.39 120.39 3.4965 0 0 0 0.40746 1 28414 28414 0.69038 0 1 45496 12068 28727 28740 52364 52364 0.04959107877562019 TRPKVSRRK 9 Unmodified _TRPKVSRRK_ 0 0 0 L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|54|3|sense;L1M4_dup10739|chrX:47949765-47952049:+|1.0283277804292374|0.0442919580532382|4.54|151.0|45|2|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|54|3|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|54|3|sense MSMS UPN47_class_I_Rep_3 4 564.379638671875 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 109.64 1 113.17 112.67 113.67 3.5347 0 0 0 0.39518 1 26941 26941 1.8442 0 1 45497 8823 28728 28741 52365 52365 0.14642429230934795 TRPRHRRKRHE 11 Unmodified _TRPRHRRKRHE_ 0 0 0 REV__ENSG00000152492|ENST00000392455|CCDC50 REV__ENSG00000152492|ENST00000392455|CCDC50 MSMS UPN48_class_I_Rep_2 6 510.2468566894531 3 510.297924 1527.87194 NaN NaN NaN NaN NaN NaN NaN 68.145 1 71.653 71.153 72.153 3.5083 0 0 0 0.38417 1 15697 15697 0.094841 0 1 + 45498 19684 28729 28742 52366 52366 0.1291208982840999 TRPSEMHM 8 Unmodified _TRPSEMHM_ 0 0 0 REV__L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|5|1|sense REV__L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 494.331787109375 2 494.720587 987.426621 NaN NaN NaN NaN NaN NaN NaN 20.739 1 24.388 23.888 24.888 3.648 0 0 0 0.40738 1 1836 1836 0.79363 0 1 + 45499 24287 28730 28743 52367 52367 -0.06759562408581132 TRQALVIYY 9 Unmodified _TRQALVIYY_ 0 0 0 ENSG00000183034|ENST00000331427|OTOP2 ENSG00000183034|ENST00000331427|OTOP2 ENSG00000183034|ENST00000331427|OTOP2 MSMS UPN48_class_I_Rep_1 5 563.815673828125 2 563.816399 1125.61824 NaN NaN NaN NaN NaN NaN NaN 56.932 1 60.426 59.926 60.926 3.4942 0 0 0 0.37891 1 12292 12292 5.7319 0 1 45500 4980 28731 28744 52368 52368 0.06046004885683942 TRQALVIYY 9 Unmodified _TRQALVIYY_ 0 0 0 ENSG00000183034|ENST00000331427|OTOP2 ENSG00000183034|ENST00000331427|OTOP2 ENSG00000183034|ENST00000331427|OTOP2 MSMS UPN48_class_I_Rep_3 7 563.818115234375 2 563.816399 1125.61824 NaN NaN NaN NaN NaN NaN NaN 56.312 1 59.854 59.354 60.354 3.5427 0 0 0 0.11494 1 12016 12016 21.747 5.8995 1 45501 4980 28731 28744 52369 52369 0.06046004885683942 TRQALVIYY 9 Unmodified _TRQALVIYY_ 0 0 0 ENSG00000183034|ENST00000331427|OTOP2 ENSG00000183034|ENST00000331427|OTOP2 ENSG00000183034|ENST00000331427|OTOP2 MSMS UPN48_class_I_Rep_3 7 563.8167114257812 2 563.816399 1125.61824 NaN NaN NaN NaN NaN NaN NaN 56.711 1 60.254 59.754 60.754 3.5427 0 0 0 0.37891 1 12139 12139 5.7319 0 1 45502 4980 28731 28744 52370 52370 0.06046004885683942 TRQDAPLSDQW 11 Unmodified _TRQDAPLSDQW_ 0 0 0 REV__L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|59|3|sense REV__L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|59|3|sense MSMS UPN48_class_I_Rep_3 7 439.5468444824219 3 439.545836 1315.61568 NaN NaN NaN NaN NaN NaN NaN 91.384 1 95.247 94.747 95.747 3.8634 0 0 0 0.38417 1 21671 21671 4.1166 0 1 + 45503 24853 28732 28745 52371 52371 -0.029504953099149134 TRQEVLGLYR 10 Unmodified _TRQEVLGLYR_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MSMS UPN48_class_I_Rep_1 5 617.84814453125 2 617.848761 1233.68297 NaN NaN NaN NaN NaN NaN NaN 41.68 1 45.186 44.686 45.686 3.506 0 0 0 0.53105 1 7625 7625 6.2058 0 1 45504 1629 28733 28746 52372 52372 0.07547579691708961 TRQIKQNQ 8 Unmodified _TRQIKQNQ_ 0 0 0 REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 508.21142578125 2 508.285797 1014.55704 -0.23179 -0.00011782 0.40376 0.00020522 0.17197 8.7408E-05 508.28636709001785 27.194 0.36721 30.96 30.812 31.179 3.7662 43 28 2 0 0 0 0.72333 1 4022 4022 0.69038 0 1 52834 + 45505 29783 28734 28747 52373 52373 0.050344929062816846 TRQIKQNQ 8 Unmodified _TRQIKQNQ_ 0 0 0 REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 508.285797 1014.55704 -0.24545 -0.00012476 0.4311 0.00021912 0.18566 9.4367E-05 508.2865332940218 27.415 0.40698 30.913 30.694 31.101 3.4986 -0.012038 7.0898E-05 NaN 0.69038 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 58636 + 45506 29783 28734 28747 0.050344929062816846 TRQIKQNQ 8 Unmodified _TRQIKQNQ_ 0 0 0 REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense REV__L1PA5_dup5564|chr8:47343969-47350103:-|4.882753740852574|0.1873280354435018|4.7|151.0|11|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 508.285797 1014.55704 -0.40788 -0.00020732 -0.16517 -8.3955E-05 -0.57305 -0.00029127 508.2865468364317 27.561 0.11521 30.903 30.873 30.988 3.3422 -0.022415 -0.00053526 NaN 0.69038 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 30812 + 45507 29783 28734 28747 0.050344929062816846 TRQLGFYI 8 Unmodified _TRQLGFYI_ 0 0 0 REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|355|2|anti-sense REV__L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|355|2|anti-sense MSMS UPN47_class_I_Rep_2 3 499.2763671875 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 39.735 1 43.113 42.613 43.613 3.3785 0 0 0 0.40581 1 7837 7837 2.8892 0 1 + 45508 24921 28735 28748 52374 52374 0.04085777651414446 TRQLLLALFLL 11 Unmodified _TRQLLLALFLL_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MSMS UPN48_class_I_Rep_3 7 434.29217529296875 3 434.283224 1299.82784 NaN NaN NaN NaN NaN NaN NaN 63.336 1 66.845 66.345 67.345 3.5091 0 0 0 0.38417 1 14152 14152 1.4551 0 1 + 45509 17532 28736 28749 52375 52375 0.18992247838832554 TRQTESVWS 9 Unmodified _TRQTESVWS_ 0 0 0 REV__nc|ENSG00000138593|Q93073-2|SECISBP2L REV__nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS UPN46_class_I_Rep_3 1 547.26611328125 2 547.26727 1092.51999 -0.024083 -1.318E-05 -0.21643 -0.00011845 -0.24052 -0.00013163 547.2670902082896 23.065 0.33453 23.065 22.955 23.29 0 33 29 2 0 0 0 0.48846 1 2856 2856 1.8442 0.19162 1 36885 + 45510 19279 28737 28750 52376 52376 -0.022572234301378558 TRQTQESSQEG 11 Unmodified _TRQTQESSQEG_ 0 0 0 REV__ENSG00000198146|ENST00000356321|ZNF770 REV__ENSG00000198146|ENST00000356321|ZNF770 MSMS UPN47_class_I_Rep_3 4 626.2330932617188 2 625.784012 1249.55347 NaN NaN NaN NaN NaN NaN NaN 12.69 1 16.064 15.564 16.564 3.3734 0 0 0 0.38417 1 132 132 0 0 1 + 45511 21115 28738 28751 52377 52377 -0.061322664489352974 TRRALLQL 8 Unmodified _TRRALLQL_ 0 0 0 REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8114013671875 2 485.811451 969.608348 0.11753 5.7098E-05 0.94106 0.00045718 1.0586 0.00051428 485.8116804246998 64.814 0.38733 68.169 68.076 68.463 3.3557 38 30 2 0 0 0 0.82752 1 15401 15401 0.69038 0 1 566130 + 45512 29506 28739 28752 52378 52378 0.12232861670997863 TRRALLQL 8 Unmodified _TRRALLQL_ 0 0 0 REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.898 1 72.265 71.765 72.765 3.3678 0 0 0 0.40746 1 16662 16662 0.69038 0 1 + 45513 29506 28739 28752 52379 52379 0.12232861670997863 TRRALLQL 8 Unmodified _TRRALLQL_ 0 0 0 REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 84.872 1 88.295 87.795 88.795 3.4232 0 0 0 0.40746 1 21146 21146 0.69038 0 1 + 45514 29506 28739 28752 52380 52380 0.12232861670997863 TRRALLQL 8 Unmodified _TRRALLQL_ 0 0 0 REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8116149902344 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.292 1 68.472 67.972 68.972 3.1795 0 0 0 0.40746 1 15672 15672 0.69038 0 1 + 45515 29506 28739 28752 52381 52381 0.12232861670997863 TRRALLQL 8 Unmodified _TRRALLQL_ 0 0 0 REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 94.122 1 97.529 97.029 98.029 3.4068 0 0 0 0.40746 1 23437 23437 0.69038 0 1 + 45516 29506 28739 28752 52382 52382 0.12232861670997863 TRRALLQL 8 Unmodified _TRRALLQL_ 0 0 0 REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense REV__L1PA3_dup10740|chr22:28386848-28392869:-|1.8293523982748965|0.1049684071573079|4.12|151.0|293|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.81158447265625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 116.58 1 120.21 119.71 120.71 3.6254 0 0 0 0.40753 1 28394 28394 0.6015 0 1 + 45517 29506 28739 28752 52383 52383 0.12232861670997863 TRRFIVVE 8 Unmodified _TRRFIVVE_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS UPN48_class_I_Rep_1 5 510.3033752441406 2 510.303458 1018.59236 0.22715 0.00011591 0.080608 4.1134E-05 0.30776 0.00015705 510.30333383093387 110.51 0.10458 114.14 114.12 114.23 3.6326 17 9 4 0 0 0 0.82752 1 26826 26826 2.5775 0 1 1548000 45518 1343 28740 28753 52384 52384 0.08381155434096854 TRRFIVVE 8 Unmodified _TRRFIVVE_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 510.303458 1018.59236 0.28333 0.00014458 0.043708 2.2304E-05 0.32704 0.00016689 510.303387703119 110.8 0.028992 114.46 114.45 114.48 3.6654 0.16112 -2.4242E-05 NaN 2.5775 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 131200 45519 1343 28740 28753 0.08381155434096854 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 471.7959289550781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 66.774 1 70.135 69.635 70.635 3.3611 0 0 0 0.40625 1 16017 16017 2.3027 0 1 + 45520 28545 28741 28754 52385 52385 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.051 1 70.412 69.912 70.912 3.3611 0 0 0 0.40625 1 16100 16100 2.3027 0 1 + 45521 28545 28741 28754 52386 52386 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.217 1 70.578 70.078 71.078 3.3611 0 0 0 0.40404 1 16150 16150 5.2307 0 1 + 45522 28545 28741 28754 52387 52387 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 471.7959289550781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.267 1 70.628 70.128 71.128 3.3611 0 0 0 0.40625 1 16166 16166 2.3027 0 1 + 45523 28545 28741 28754 52388 52388 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.542 1 70.903 70.403 71.403 3.3611 0 0 0 0.40625 1 16248 16248 2.3027 0 1 + 45524 28545 28741 28754 52389 52389 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 471.7958679199219 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 73.524 1 76.91 76.41 77.41 3.3861 0 0 0 0.40604 1 18057 18057 2.5775 0 1 + 45525 28545 28741 28754 52390 52390 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 471.7958984375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 23.718 1 27.183 26.683 27.683 3.4655 0 0 0 0.40746 1 3029 3029 0.69038 0 1 + 45526 28545 28741 28754 52391 52391 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 471.7955627441406 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 47.546 1 50.895 50.395 51.395 3.3492 0 0 0 0.40604 1 10216 10216 2.5775 0 1 + 45527 28545 28741 28754 52392 52392 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.164 1 70.427 69.927 70.927 3.2636 0 0 0 0.40404 1 16181 16181 5.2307 0 1 + 45528 28545 28741 28754 52393 52393 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 471.7956237792969 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.234 1 70.498 69.998 70.998 3.2636 0 0 0 0.40625 1 16202 16202 2.3027 0 1 + 45529 28545 28741 28754 52394 52394 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.16 1 70.352 69.852 70.852 3.1914 0 0 0 0.40404 1 16245 16245 5.2307 0 1 + 45530 28545 28741 28754 52395 52395 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 471.79541015625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.235 1 70.426 69.926 70.926 3.1914 0 0 0 0.40625 1 16268 16268 2.3027 0 1 + 45531 28545 28741 28754 52396 52396 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 471.7957458496094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.414 1 70.605 70.105 71.105 3.1914 0 0 0 0.40404 1 16321 16321 5.2307 0 1 + 45532 28545 28741 28754 52397 52397 0.10392288636899139 TRRGVQLL 8 Unmodified _TRRGVQLL_ 0 0 0 REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense REV__L1MEd_dup16220|chr12:69536868-69537870:-|1.3733310747844771|0.0462094708914733|4.89|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 79.317 1 82.95 82.45 83.45 3.6331 0 0 0 0.40604 1 18839 18839 2.5775 0 1 + 45533 28545 28741 28754 52398 52398 0.10392288636899139 TRRHLFYK 8 Unmodified _TRRHLFYK_ 0 0 0 REV__L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|45|2|sense REV__L1ME3_dup4491|chr8:142307729-142310217:-|2.0292503940845257|0.2125233370820995|3.26|151.0|45|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.8214721679688 2 560.82235 1119.63015 -0.020779 -1.1653E-05 -1.1005 -0.00061718 -1.1213 -0.00062884 560.821640591771 39.619 0.5151 43.285 42.93 43.445 3.6668 56 38 2 0 0 0 0.82752 1 7794 7794 4.3292 1.0479 1 104810 + 45534 27955 28742 28755 52399 52399 0.07511666419532048 TRRIHSLGKV 10 Unmodified _TRRIHSLGKV_ 0 0 0 REV__L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|50|2|anti-sense REV__L1M2_dup961|chr2:119902509-119903556:+|1.1965547722224927|0.015359493143947|6.28|151.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 583.858642578125 2 583.859464 1165.70437 0.41268 0.00024095 -0.9482 -0.00055362 -0.53552 -0.00031267 583.8586670017747 89.514 0.45852 93.14 92.916 93.375 3.6255 65 48 2 0 0 0 0.56486 1 21546 21546 0.40072 0 1 166110 + 45535 24250 28743 28756 52400 52400 0.1281500951106409 TRRIIKHV 8 Unmodified _TRRIIKHV_ 0 0 0 REV__LTR8B_dup554|chr6:42316508-42317314:+|1.17068455532913|0.0265254562276172|5.46|150.0|29|3|sense REV__LTR8B_dup554|chr6:42316508-42317314:+|1.17068455532913|0.0265254562276172|5.46|150.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 511.8331298828125 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 27.54 1 27.54 27.04 28.04 0 0 0 0 0.40746 1 4102 4102 0.69038 0 1 + 45536 31041 28744 28757 52401 52401 0.14092256799222014 TRRITKATR 9 Unmodified _TRRITKATR_ 0 0 0 REV__ENST00000450106.1_1_10:35407504-35407642:-|nuORF REV__ENST00000450106.1_1_10:35407504-35407642:-|nuORF MSMS UPN48_class_I_Rep_2 6 551.843017578125 2 551.843813 1101.67307 NaN NaN NaN NaN NaN NaN NaN 83.13 1 86.812 86.312 87.312 3.6814 0 0 0 0.4029 1 19749 19749 0 0 1 + 45537 22382 28745 28758 52402 52402 0.12630436476956675 TRRIYHKG 8 Unmodified _TRRIYHKG_ 0 0 0 REV__ENSG00000021852|ENST00000371237|C8B REV__ENSG00000021852|ENST00000371237|C8B MSMS UPN48_class_I_Rep_2 6 515.7981567382812 2 515.798875 1029.5832 NaN NaN NaN NaN NaN NaN NaN 29.157 1 32.788 32.288 33.288 3.6316 0 0 0 0.4044 1 4106 4106 4.756 0 1 + 45538 17610 28746 28759 52403 52403 0.06958806868397005 TRRIYHKG 8 Unmodified _TRRIYHKG_ 0 0 0 REV__ENSG00000021852|ENST00000371237|C8B REV__ENSG00000021852|ENST00000371237|C8B MULTI-MSMS UPN48_class_I_Rep_3 7 515.7984619140625 2 515.798875 1029.5832 0.23718 0.00012234 -1.4951 -0.00077117 -1.2579 -0.00064883 515.7979799399764 28.808 0.54074 32.551 32.314 32.854 3.7424 73 60 2 0 0 0 0.82752 1 3926 3926 4.756 0 1 80220 + 45539 17610 28746 28759 52404 52404 0.06958806868397005 TRRKHRRN 8 Unmodified _TRRKHRRN_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|45|1|sense;L1MA4A_dup5635|chr17:30157320-30159648:-|2.711977942127408|0.0618967944216813|5.45|151.0|11|1|sense;L1MA4A_dup2400|chr6:99453982-99454806:+|1.9751469454462216|0.1613719968679799|3.61|151.0|24|3|sense;L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|78|3|sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|45|1|sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|45|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 562.3343505859375 2 562.337021 1122.65949 0.50579 0.00028442 -3.6231 -0.0020374 -3.1173 -0.001753 563.339253937934 110.65 0.12077 114.23 114.15 114.27 3.5835 28 14 3 0 0 0 0.72333 1 27289 27289 0.6015 0 1 226580 45540 9678 28747 28760 52405 52405 0.10306623488418154 TRRKKRRER 9 Unmodified _TRRKKRRER_ 0 0 0 nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4 nc|ENSG00000168228|Q9H5U6-3|ZCCHC4 nc|ENSG00000168228|Q9H5U6-3|ZCCHC4 MULTI-MSMS UPN46_class_I_Rep_3 1 643.4063720703125 2 643.405435 1284.79632 0.75266 0.00048426 0.73032 0.00046989 1.483 0.00095415 643.405910488899 102.54 0.055222 102.54 102.53 102.59 0 7 4 2 0 0 0 0.5015 1 25026 25026 0.45834 0 1 542580 45541 4358 28748 28761 52406 52406 0.16531112648112867 TRRKKRSKG 9 Unmodified _TRRKKRSKG_ 0 0 0 REV__ENST00000445455.1_1_X:79816274-79816610:+|nuORF REV__ENST00000445455.1_1_X:79816274-79816610:+|nuORF MSMS UPN46_class_I_Rep_3 1 558.8572387695312 2 558.857255 1115.69996 NaN NaN NaN NaN NaN NaN NaN 101.94 1 101.94 101.44 102.44 0 0 0 0 0.4029 1 24875 24875 0 0 1 + 45542 22355 28749 28762 52407 52407 0.1467354508815788 TRRKRVPH 8 Unmodified _TRRKRVPH_ 0 0 0 REV__ENST00000361725.4_1_2:172952933-172953254:+|nuORF REV__ENST00000361725.4_1_2:172952933-172953254:+|nuORF MSMS UPN46_class_I_Rep_3 1 525.3239135742188 2 525.325591 1048.63663 NaN NaN NaN NaN NaN NaN NaN 31.363 1 31.363 30.863 31.863 0 0 0 0 0.40746 1 5230 5230 0.69038 0 1 + 45543 21907 28750 28763 52408 52408 0.11425604370924702 TRRLAAQAA 9 Unmodified _TRRLAAQAA_ 0 0 0 REV__ENST00000479307.5_1_3:186508099-186512490:-|nuORF REV__ENST00000479307.5_1_3:186508099-186512490:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 479.2835693359375 2 479.283057 956.551562 -0.32302 -0.00015482 -0.38268 -0.00018341 -0.7057 -0.00033823 479.2830098724679 15.201 0.31349 15.201 15.108 15.422 0 41 33 2 0 0 0 0.50582 1 823 823 0 0 1 26241 + 45544 20017 28751 28764 52409 52409 0.07154814114437613 TRRLKIRVR 9 Unmodified _TRRLKIRVR_ 0 0 0 HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|26|1|anti-sense HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|26|1|anti-sense HERV9-int_dup341|chr21:29355465-29356237:-|1.967154664461814|0.2111416613863589|3.22|150.0|26|1|anti-sense MSMS UPN48_class_I_Rep_1 5 599.4022216796875 2 599.404373 1196.79419 NaN NaN NaN NaN NaN NaN NaN 77.769 1 81.291 80.791 81.791 3.5221 0 0 0 0.4007 1 18523 18523 0.52476 0 1 45545 8080 28752 28765 52410 52410 0.20366683910287975 TRRNLVLA 8 Unmodified _TRRNLVLA_ 0 0 0 ENSG00000148835|ENST00000369839|TAF5;nc|ENSG00000148835|Q15542-2|TAF5 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 MSMS UPN47_class_I_Rep_3 4 471.79559326171875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 44.275 1 47.519 47.019 48.019 3.2441 0 0 0 0.40738 1 9269 9269 0.79363 0 1 45546 3521 28753 28766 52411 52411 0.1039228863688777 TRRPCRRL 8 Unmodified _TRRPCRRL_ 0 0 0 ENST00000317633.13_2_5:70196496-70197687:+|nuORF ENST00000317633.13_2_5:70196496-70197687:+|nuORF ENST00000317633.13_2_5:70196496-70197687:+|nuORF MSMS UPN47_class_I_Rep_2 3 529.3101806640625 2 529.311626 1056.6087 NaN NaN NaN NaN NaN NaN NaN 82.014 1 85.412 84.912 85.912 3.3984 0 0 0 0.40746 1 20440 20440 0.69038 0 1 45547 6142 28754 28767 52412 52412 0.0826595811918196 TRRRAPRV 8 Unmodified _TRRRAPRV_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN47_class_I_Rep_3 4 506.2584533691406 2 506.317766 1010.62098 NaN NaN NaN NaN NaN NaN NaN 46.262 1 49.506 49.006 50.006 3.2439 0 0 0 0.40625 1 9881 9881 2.3027 1.5091 1 + 45548 19771 28755 28768 52413 52413 0.1160931785387902 TRRRMKLDPNF 11 Unmodified _TRRRMKLDPNF_ 0 0 0 L1MA6_dup1803|chr5:95065774-95066805:+|1.6228891243448558|0.018903105078273|6.42|150.0|26|3|sense L1MA6_dup1803|chr5:95065774-95066805:+|1.6228891243448558|0.018903105078273|6.42|150.0|26|3|sense L1MA6_dup1803|chr5:95065774-95066805:+|1.6228891243448558|0.018903105078273|6.42|150.0|26|3|sense MSMS UPN48_class_I_Rep_2 6 478.5987548828125 3 478.597988 1432.77214 NaN NaN NaN NaN NaN NaN NaN 40.034 1 43.775 43.275 44.275 3.7413 0 0 0 0.38417 1 7168 7168 2.8433 1.3882 1 45549 9961 28756 28769 52414 52414 0.07306091379587087 TRRRRRFF 8 Unmodified _TRRRRRFF_ 0 0 0 REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 597.3939819335938 2 597.85759 1193.70063 0.41344 0.00024718 -0.30766 -0.00018393 0.10579 6.3246E-05 598.3589735900507 96.684 0.046303 100.3 100.27 100.32 3.6124 5 3 2 0 0 0 0.72333 1 23297 23297 0.69038 0.16561 1 87273 + 45550 22107 28757 28770 52415 52415 0.11152384527872528 TRRRRSLS 8 Unmodified _TRRRRSLS_ 0 0 0 REV__ENST00000538118.5_1_12:25047396-25055084:-|nuORF REV__ENST00000538118.5_1_12:25047396-25055084:-|nuORF MSMS UPN46_class_I_Rep_3 1 516.3138427734375 2 516.312681 1030.61081 NaN NaN NaN NaN NaN NaN NaN 96.774 1 96.774 96.274 97.274 0 0 0 0 0.40746 1 23536 23536 0.69038 0 1 + 45551 22903 28758 28771 52416 52416 0.09672710128643303 TRRTAIKF 8 Unmodified _TRRTAIKF_ 0 0 0 REV__Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|33|3|sense REV__Tigger6a_dup421|chr8:120626319-120627323:-|1.597041975663644|0.0258079135321073|5.95|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 496.8029479980469 2 496.803626 991.592698 NaN NaN NaN NaN NaN NaN NaN 59.838 1 63.355 62.855 63.855 3.5169 0 0 0 0.40753 1 13095 13095 0.6015 0 1 + 45552 32800 28759 28772 52417 52417 0.0965657515392877 TRRTNYHKY 9 Unmodified _TRRTNYHKY_ 0 0 0 L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|61|2|sense L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|61|2|sense L1PA4_dup5735|chr8:9658441-9662755:+|3.387852731034401|0.1478934653816151|4.52|151.0|61|2|sense MSMS UPN48_class_I_Rep_3 7 619.8217163085938 2 619.823078 1237.6316 NaN NaN NaN NaN NaN NaN NaN 63.594 1 67.103 66.603 67.603 3.5091 0 0 0 0.39518 1 14230 14230 1.8442 0.19162 1 45553 14368 28760 28773 52418 52418 0.02229255717656997 TRRVLVLRTP 10 Unmodified _TRRVLVLRTP_ 0 0 0 LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|36|2|anti-sense LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|36|2|anti-sense LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 404.2637939453125 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 66.858 1 70.354 69.854 70.854 3.4964 0 0 0 0.53105 1 15307 15307 1.4551 0 1 45554 15580 28761 28774 52419 52419 0.1704815557927759 TRRVLVLRTP 10 Unmodified _TRRVLVLRTP_ 0 0 0 LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|36|2|anti-sense LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|36|2|anti-sense LTR17_dup448|chr8:67188273-67189042:+|1.4794807071358411|0.146727500946403|3.33|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_3 7 404.26300048828125 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 66.589 1 70.097 69.597 70.597 3.5077 0 0 0 0.53105 1 15136 15136 0.50596 0 1 45555 15580 28761 28774 52420 52420 0.1704815557927759 TRRWSARSGS 10 Unmodified _TRRWSARSGS_ 0 0 0 REV__ENST00000450717.7_1_19:11144862-11145710:+|nuORF REV__ENST00000450717.7_1_19:11144862-11145710:+|nuORF MSMS UPN47_class_I_Rep_1 2 582.3060302734375 2 582.305052 1162.59555 NaN NaN NaN NaN NaN NaN NaN 43.272 1 46.96 46.46 47.46 3.6875 0 0 0 0.53105 1 8881 8881 1.1933 0 1 + 45556 22385 28762 28775 52421 52421 0.020757985407954038 TRSQFITIP 9 Unmodified _TRSQFITIP_ 0 0 0 LTR33_dup4079|chr7:92678792-92679181:+|1.5495973949816269|0.0053187786343863|8.19|151.0|18|2|anti-sense LTR33_dup4079|chr7:92678792-92679181:+|1.5495973949816269|0.0053187786343863|8.19|151.0|18|2|anti-sense LTR33_dup4079|chr7:92678792-92679181:+|1.5495973949816269|0.0053187786343863|8.19|151.0|18|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 531.3031616210938 2 531.800749 1061.58694 0.52684 0.00028018 0.025191 1.3396E-05 0.55203 0.00029357 531.8007719302842 63.239 0.58456 66.748 66.558 67.142 3.5091 74 47 2 0 0 0 0.11959 1 14242 14242 7.9102 0 1 160780 45557 15622 28763 28776 52422 52422 0.058614318515992636 TRSRLTKI 8 Unmodified _TRSRLTKI_ 0 0 0 L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|5|1|sense L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|5|1|sense L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.80865478515625 2 487.808908 973.603263 0.28778 0.00014038 -0.28283 -0.00013797 0.0049508 2.4151E-06 487.80872876346393 97.709 0.16174 97.709 97.56 97.722 0 25 19 2 0 0 0 0.82752 1 23754 23754 0 0 1 101200 45558 12870 28764 28777 52423 52423 0.1154055780834824 TRSRLTKI 8 Unmodified _TRSRLTKI_ 0 0 0 L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|5|1|sense L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|5|1|sense L1ME4a_dup33496|chr21:41910847-41911358:-|1.1460572691644977|0.4099640835200207|1.48|151.0|5|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 487.808908 973.603263 0.24051 0.00011732 -0.20636 -0.00010067 0.034144 1.6656E-05 487.80879787464715 93.74 0.27663 97.631 97.581 97.858 3.8914 -0.038642 1.729E-05 NaN 0 51 37 2 NaN NaN NaN NaN 0 NaN NaN 0 84352 45559 12870 28764 28777 0.1154055780834824 TRSTSLLVLL 10 Unmodified _TRSTSLLVLL_ 0 0 0 REV__HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|46|2|sense REV__HERVK9-int_dup23|chr1:94445706-94448660:+|1.0489100834694938|0.2385671269965426|2.14|151.0|46|2|sense MSMS UPN48_class_I_Rep_1 5 551.8445434570312 2 551.845156 1101.67576 NaN NaN NaN NaN NaN NaN NaN 87.849 1 91.468 90.968 91.968 3.6187 0 0 0 0.53105 1 21059 21059 0.35063 0.35063 1 + 45560 23829 28765 28778 52424 52424 0.1289884709128728 TRSVSGGCFF 10 Unmodified _TRSVSGGCFF_ 0 0 0 REV__L1MEd_dup12195|chr9:85635518-85636018:+|1.0734850380898209|0.0245079122170775|5.45|151.0|26|1|anti-sense REV__L1MEd_dup12195|chr9:85635518-85636018:+|1.0734850380898209|0.0245079122170775|5.45|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7348022460938 2 530.747659 1059.48076 NaN NaN NaN NaN NaN NaN NaN 18.656 1 22.01 21.51 22.51 3.3545 0 0 0 0.53105 1 1594 1594 3.5965 0 1 + 45561 28508 28766 28779 52425 52425 -0.046596469853511735 TRSYPHLRRV 10 Unmodified _TRSYPHLRRV_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MSMS UPN48_class_I_Rep_1 5 642.8690795898438 2 642.86782 1283.72109 NaN NaN NaN NaN NaN NaN NaN 69.436 1 72.891 72.391 73.391 3.4548 0 0 0 0.53105 1 16109 16109 5.7319 0.43497 1 45562 5343 28767 28780 52426 52426 0.09057510396996804 TRTEIIIL 8 Unmodified _TRTEIIIL_ 0 0 0 nc|ENSG00000149273|P23396-2|RPS3;ENSG00000149273|ENST00000531188|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF nc|ENSG00000149273|P23396-2|RPS3 nc|ENSG00000149273|P23396-2|RPS3 MSMS UPN47_class_I_Rep_1 2 479.7980651855469 2 479.800217 957.585882 NaN NaN NaN NaN NaN NaN NaN 30.601 1 34.346 33.846 34.846 3.7449 0 0 0 0.40753 1 5023 5023 0.6015 0 1 45563 3535 28768 28781 52427 52427 0.10539217482721597 TRTGRYTI 8 Unmodified _TRTGRYTI_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|5|1|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 484.26959228515625 2 484.269616 966.524678 NaN NaN NaN NaN NaN NaN NaN 21.494 1 25.169 24.669 25.669 3.6749 0 0 0 0.4044 1 2341 2341 4.756 0 1 + 45564 27252 28769 28782 52428 52428 0.04007705503283887 TRTGRYTI 8 Unmodified _TRTGRYTI_ 0 0 0 REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|5|1|sense REV__L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 484.26904296875 2 484.269616 966.524678 -0.62106 -0.00030076 0.082802 4.0098E-05 -0.53826 -0.00026066 484.2697064095342 21.978 0.89223 25.328 24.97 25.862 3.3496 107 82 2 0 0 0 0.82752 1 2585 2585 4.756 0 1 75953 + 45565 27252 28769 28782 52429 52429 0.04007705503283887 TRTKAKQP 8 Unmodified _TRTKAKQP_ 0 0 0 REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|20|1|sense REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 465.2798156738281 2 465.279983 928.545414 NaN NaN NaN NaN NaN NaN NaN 83.087 1 83.087 82.587 83.587 0 0 0 0 0.40643 1 19714 19714 2.0598 0 1 + 45566 25192 28770 28783 52430 52430 0.07828295882939074 TRTKAKQP 8 Unmodified _TRTKAKQP_ 0 0 0 REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|20|1|sense REV__L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|20|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 465.2796936035156 2 465.279983 928.545414 0.23076 0.00010737 -0.40215 -0.00018711 -0.17139 -7.9746E-05 465.2797151247051 79.687 0.3357 83.329 83.089 83.424 3.6423 64 42 2 0 0 0 0.82752 1 18896 18896 2.0598 0.21551 1 177080 + 45567 25192 28770 28783 52431 52431 0.07828295882939074 TRTKLIKLK 9 Unmodified _TRTKLIKLK_ 0 0 0 REV__L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|77|2|sense REV__L1PA6_dup1370|chr4:13416765-13422917:+|1.019908075277212|0.0614495824640999|4.05|151.0|77|2|sense MSMS UPN48_class_I_Rep_1 5 550.8789672851562 2 550.879333 1099.74411 NaN NaN NaN NaN NaN NaN NaN 109.87 1 113.5 113 114 3.6326 0 0 0 0.39518 1 26686 26686 1.8442 0 1 + 45568 29841 28771 28784 52432 52432 0.19823136461786817 TRTKQKRLHV 10 Unmodified _TRTKQKRLHV_ 0 0 0 REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B MSMS UPN48_class_I_Rep_1 5 633.890380859375 2 633.891295 1265.76804 NaN NaN NaN NaN NaN NaN NaN 85.751 1 89.357 88.857 89.857 3.6059 0 0 0 0.53105 1 20520 20520 1.1933 1.1933 1 + 45569 17938 28772 28785 52433 52433 0.14578369948162617 TRTKQKRLHV 10 Unmodified _TRTKQKRLHV_ 0 0 0 REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B MSMS UPN48_class_I_Rep_1 5 633.8716430664062 2 633.891295 1265.76804 NaN NaN NaN NaN NaN NaN NaN 85.865 1 89.471 88.971 89.971 3.6059 0 0 0 0.53105 1 20554 20554 1.1933 0 1 + 45570 17938 28772 28785 52434 52434 0.14578369948162617 TRTKQKRLHV 10 Unmodified _TRTKQKRLHV_ 0 0 0 REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B MSMS UPN48_class_I_Rep_1 5 633.8895263671875 2 633.891295 1265.76804 NaN NaN NaN NaN NaN NaN NaN 86.235 1 89.848 89.348 90.348 3.613 0 0 0 0.53105 1 20657 20657 2.9952 1.6657 1 + 45571 17938 28772 28785 52435 52435 0.14578369948162617 TRTKQKRLHV 10 Unmodified _TRTKQKRLHV_ 0 0 0 REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B MSMS UPN48_class_I_Rep_3 7 633.8880615234375 2 633.891295 1265.76804 NaN NaN NaN NaN NaN NaN NaN 85.765 1 89.535 89.035 90.035 3.7701 0 0 0 0.53105 1 20347 20347 1.4819 0 1 + 45572 17938 28772 28785 52436 52436 0.14578369948162617 TRTLIAALL 9 Unmodified _TRTLIAALL_ 0 0 0 L1ME4b_dup7187|chr5:150723761-150724114:-|1.097774443126469|0.0634951175871299|4.11|150.0|8|2|sense L1ME4b_dup7187|chr5:150723761-150724114:-|1.097774443126469|0.0634951175871299|4.11|150.0|8|2|sense L1ME4b_dup7187|chr5:150723761-150724114:-|1.097774443126469|0.0634951175871299|4.11|150.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 486.3164367675781 2 486.316035 970.617516 NaN NaN NaN NaN NaN NaN NaN 68.73 1 72.238 71.738 72.738 3.5083 0 0 0 0.32573 1 15870 15870 9.3831 0 1 45573 12939 28773 28786 52437 52437 0.13103210236658924 TRTNTDHKR 9 Unmodified _TRTNTDHKR_ 0 0 0 REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense REV__L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense MSMS UPN48_class_I_Rep_2 6 564.7964477539062 2 564.79706 1127.57957 NaN NaN NaN NaN NaN NaN NaN 28.941 1 32.573 32.073 33.073 3.6316 0 0 0 0.39518 1 4046 4046 1.8442 0 1 + 45574 25440 28774 28787 52438 52438 0.020880923038930632 TRTQLKPAIP 10 Unmodified _TRTQLKPAIP_ 0 0 0 REV__Tigger3a_dup4724|chr16:84751025-84751311:+|1.2827695749693928|0.0570765795475671|4.49|151.0|14|1|anti-sense REV__Tigger3a_dup4724|chr16:84751025-84751311:+|1.2827695749693928|0.0570765795475671|4.49|151.0|14|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.8434448242188 2 562.842948 1123.67134 0.43796 0.0002465 0.092884 5.2279E-05 0.53084 0.00029878 562.8428989442142 107.88 0.4344 111.51 111.42 111.86 3.6313 114 36 5 0 0 0 0.4965 1 26019 26019 12.241 0.74595 1 56070000 + 45575 32718 28775 28788 52439 52439 0.11445382668375714 TRTVKARA 8 Unmodified _TRTVKARA_ 0 0 0 REV__MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|123|3|sense REV__MER61-int_dup409|chr5:116344163-116347860:-|2.887764138228336|0.0266949374463243|6.76|150.0|123|3|sense MSMS UPN48_class_I_Rep_2 6 451.7802734375 2 451.780151 901.545748 NaN NaN NaN NaN NaN NaN NaN 78.001 1 81.623 81.123 82.123 3.6222 0 0 0 0.40746 1 18494 18494 0.69038 0 1 + 45576 31499 28776 28789 52440 52440 0.09103715602793727 TRTWKHPK 8 Unmodified _TRTWKHPK_ 0 0 0 L1MC3_dup11497|chr16:81663121-81664011:+|1.0259167765159622|0.4156810928425922|1.3|151.0|16|3|sense L1MC3_dup11497|chr16:81663121-81664011:+|1.0259167765159622|0.4156810928425922|1.3|151.0|16|3|sense L1MC3_dup11497|chr16:81663121-81664011:+|1.0259167765159622|0.4156810928425922|1.3|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 527.3012084960938 2 527.30125 1052.58795 NaN NaN NaN NaN NaN NaN NaN 24.217 1 27.857 27.357 28.357 3.6397 0 0 0 0.40746 1 2776 2776 0.69038 0 1 45577 11301 28777 28790 52441 52441 0.06375691011157869 TRVADLDTGIP 11 Unmodified _TRVADLDTGIP_ 0 0 0 REV__nc|ENSG00000101057|P10244-2|MYBL2 REV__nc|ENSG00000101057|P10244-2|MYBL2 MSMS UPN46_class_I_Rep_3 1 579.3115844726562 2 579.311677 1156.6088 NaN NaN NaN NaN NaN NaN NaN 59.566 1 59.566 59.066 60.066 0 0 0 0 0.38417 1 13178 13178 5.2969 1.7004 1 + 45578 18144 28778 28791 52442 52442 0.036761918094953216 TRVIIHLH 8 Unmodified _TRVIIHLH_ 0 0 0 REV__PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|35|2|anti-sense REV__PRIMA4-int_dup87|chr3:136691518-136692026:-|1.3916937344374856|0.0042444251260318|8.36|151.0|35|2|anti-sense MSMS UPN48_class_I_Rep_1 5 494.8055725097656 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 33.658 1 37.178 36.678 37.678 3.5201 0 0 0 0.40738 1 5280 5280 0.79363 0 1 + 45579 32171 28779 28792 52443 52443 0.10348879016555657 TRVKAVRIL 9 Unmodified _TRVKAVRIL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN47_class_I_Rep_1 2 528.35595703125 2 528.356025 1054.6975 NaN NaN NaN NaN NaN NaN NaN 30.546 1 34.291 33.791 34.791 3.7449 0 0 0 0.39518 1 5006 5006 1.8442 0.19162 1 45580 5798 28780 28793 52444 52444 0.17233696630501072 TRVKAVRIL 9 Unmodified _TRVKAVRIL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN47_class_I_Rep_2 3 528.3560791015625 2 528.356025 1054.6975 NaN NaN NaN NaN NaN NaN NaN 30.779 1 34.261 33.761 34.761 3.4821 0 0 0 0.39518 1 5121 5121 1.8442 0 1 45581 5798 28780 28793 52445 52445 0.17233696630501072 TRVKAVRIL 9 Unmodified _TRVKAVRIL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS UPN47_class_I_Rep_3 4 528.355712890625 2 528.356025 1054.6975 -0.24116 -0.00012742 0.12713 6.7171E-05 -0.11403 -6.0248E-05 528.3560480112965 31.184 0.57658 34.483 34.24 34.817 3.2991 68 49 2 0 0 0 0.50088 1 5368 5368 0.52476 0 1 58807 45582 5798 28780 28793 52446 52446 0.17233696630501072 TRVQKHRKILR 11 Unmodified _TRVQKHRKILR_ 0 0 0 ENST00000443339.5_1_3:9475802-9506425:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5 ENST00000443339.5_1_3:9475802-9506425:+|nuORF ENST00000443339.5_1_3:9475802-9506425:+|nuORF MSMS UPN48_class_I_Rep_2 6 478.9742431640625 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 48.745 1 52.462 51.962 52.962 3.7175 0 0 0 0.38417 1 9773 9773 1.1098 0.6038 1 45583 4354 28781 28794 52447 52447 0.2059369854760007 TRVSRPKPRR 10 Unmodified _TRVSRPKPRR_ 0 0 0 ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF ENST00000565493.1_1_20:34638316-34638640:-|nuORF MSMS UPN47_class_I_Rep_1 2 626.8894653320312 2 626.889087 1251.76362 NaN NaN NaN NaN NaN NaN NaN 106.15 1 109.86 109.36 110.36 3.7088 0 0 0 0.53105 1 26029 26029 1.4819 0 1 45584 7486 28782 28795 52448 52448 0.1478090552525373 TRWLGRRYR 9 Unmodified _TRWLGRRYR_ 0 0 0 REV__ENSG00000234828|ENST00000636793|IQCM REV__ENSG00000234828|ENST00000636793|IQCM MSMS UPN46_class_I_Rep_3 1 632.7440185546875 2 632.362705 1262.71086 NaN NaN NaN NaN NaN NaN NaN 83.816 1 83.816 83.316 84.316 0 0 0 0 0.39518 1 19921 19921 1.8442 0.36234 1 + 45585 21304 28783 28796 52449 52449 0.0900094746243667 TRWRIRPRPR 10 Unmodified _TRWRIRPRPR_ 0 0 0 ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENST00000396503.7_1_16:11931646-11945380:-|nuORF MSMS UPN47_class_I_Rep_2 3 465.28570556640625 3 465.284844 1392.8327 NaN NaN NaN NaN NaN NaN NaN 80.97 1 84.354 83.854 84.854 3.3839 0 0 0 0.53105 1 20161 20161 0.15932 0 1 45586 6568 28784 28797 52450 52450 0.15199989544817072 TRWRRRER 8 Unmodified _TRWRRRER_ 0 0 0 L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 405.90155029296875 3 405.902511 1214.6857 -0.38444 -0.00015604 -1.8805 -0.00076331 -2.265 -0.00091935 405.9016327473591 21.505 0.3026 21.505 21.366 21.668 0 61 35 2 0 0 0 0.72333 1 2403 2403 0.35063 0.081612 1 43738 45587 12217 28785 28798 52451 52451 0.08694892659877951 TRYMENNKMA 10 Unmodified _TRYMENNKMA_ 0 0 0 L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|38|2|sense L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|38|2|sense L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 629.28857421875 2 629.289365 1256.56418 0.49171 0.00030943 -0.058576 -3.6861E-05 0.43313 0.00027257 629.2891205171892 32.229 0.44968 35.756 35.441 35.89 3.5266 59 43 2 0 0 0 0.56309 1 4881 4881 1.6526 0.17072 1 113620 45588 10249 28786 28799 52452 52452 -0.05384278599831305 TSAYYRSA 8 Unmodified _TSAYYRSA_ 0 0 0 ENSG00000206418.4,RAB12,chr18,+,I1.1,8609954,8624937|109|5.57|3|intron;nc|ENSG00000206418|Q6IQ22|RAB12;ENSG00000206418|ENST00000649141|RAB12 ENSG00000206418.4,RAB12,chr18,+,I1.1,8609954,8624937|109|5.57|3|intron ENSG00000206418.4,RAB12,chr18,+,I1.1,8609954,8624937|109|5.57|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 459.7193908691406 2 459.719424 917.424296 -0.062242 -2.8614E-05 -0.23528 -0.00010816 -0.29753 -0.00013678 459.71925561338486 29.354 0.56396 29.354 29.181 29.745 0 79 48 2 0 0 0 0.82752 1 4612 4612 7.2892 0 1 85180 45589 5569 28787 28800 52453 52453 -0.037719515503795265 TSCHYCMD 8 Unmodified _TSCHYCMD_ 0 0 0 ENST00000429979.5_2_13:46952026-46952128:-|nuORF;ENST00000378784.8_1_13:46946296-46952128:-|nuORF ENST00000429979.5_2_13:46952026-46952128:-|nuORF ENST00000429979.5_2_13:46952026-46952128:-|nuORF MSMS UPN47_class_I_Rep_1 2 479.7495422363281 2 480.156431 958.298309 NaN NaN NaN NaN NaN NaN NaN 119.21 1 122.82 122.32 123.32 3.6036 0 0 0 0.40746 1 29614 29614 0.69038 0 1 45590 6474 28788 28801 52454 52454 -0.18250865713980602 TSCHYCMD 8 Unmodified _TSCHYCMD_ 0 0 0 ENST00000429979.5_2_13:46952026-46952128:-|nuORF;ENST00000378784.8_1_13:46946296-46952128:-|nuORF ENST00000429979.5_2_13:46952026-46952128:-|nuORF ENST00000429979.5_2_13:46952026-46952128:-|nuORF MSMS UPN47_class_I_Rep_2 3 479.7249450683594 2 480.156431 958.298309 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.1 116.6 117.6 3.5109 0 0 0 0.40746 1 27633 27633 0.69038 0 1 45591 6474 28788 28801 52455 52455 -0.18250865713980602 TSCMWYSCQK 10 Unmodified _TSCMWYSCQK_ 0 0 0 L1MC4_dup8635|chr6:166985420-166985922:+|1.912280406837212|0.1766784026344937|3.44|151.0|3|1|sense L1MC4_dup8635|chr6:166985420-166985922:+|1.912280406837212|0.1766784026344937|3.44|151.0|3|1|sense L1MC4_dup8635|chr6:166985420-166985922:+|1.912280406837212|0.1766784026344937|3.44|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 618.7435302734375 2 618.745944 1235.47734 NaN NaN NaN NaN NaN NaN NaN 21.551 1 24.975 24.475 25.475 3.4241 0 0 0 0.53105 1 2425 2425 1.6526 0 1 45592 11529 28789 28802 52456 52456 -0.13098401145930438 TSCSAKKKK 9 Unmodified _TSCSAKKKK_ 0 0 0 L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|14|3|sense L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|14|3|sense L1MC3_dup9344|chr12:69540280-69541059:+|1.4915644572122362|0.0308333913932849|5.6|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 490.7812194824219 2 490.781502 979.54845 NaN NaN NaN NaN NaN NaN NaN 117.39 1 117.39 116.89 117.89 0 0 0 0 0.4007 1 29094 29094 0.52476 0.52476 1 45593 11387 28790 28803 52457 52457 0.057858029454337156 TSDCECLF 8 Unmodified _TSDCECLF_ 0 0 0 ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000107863|ENST00000396432|ARHGAP21 ENST00000401578.2_1_6:80776237-80776996:-|nuORF ENST00000401578.2_1_6:80776237-80776996:-|nuORF MSMS UPN48_class_I_Rep_1 5 459.1723937988281 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 43.182 1 46.693 46.193 47.193 3.5103 0 0 0 0.40738 1 8076 8076 0.79363 0 1 45594 1836 28791 28804 52458 52458 -0.1308575503933298 TSDCECLF 8 Unmodified _TSDCECLF_ 0 0 0 ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000107863|ENST00000396432|ARHGAP21 ENST00000401578.2_1_6:80776237-80776996:-|nuORF ENST00000401578.2_1_6:80776237-80776996:-|nuORF MSMS UPN48_class_I_Rep_2 6 459.17230224609375 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 44.651 1 48.412 47.912 48.912 3.7617 0 0 0 0.40738 1 8533 8533 0.79363 0 1 45595 1836 28791 28804 52459 52459 -0.1308575503933298 TSDCECLF 8 Unmodified _TSDCECLF_ 0 0 0 ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000107863|ENST00000396432|ARHGAP21 ENST00000401578.2_1_6:80776237-80776996:-|nuORF ENST00000401578.2_1_6:80776237-80776996:-|nuORF MSMS UPN48_class_I_Rep_3 7 459.17205810546875 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 44.723 1 48.36 47.86 48.86 3.6372 0 0 0 0.40738 1 8481 8481 0.79363 0 1 45596 1836 28791 28804 52460 52460 -0.1308575503933298 TSDEIQFES 9 Unmodified _TSDEIQFES_ 0 0 0 L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|56|2|sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|56|2|sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|56|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.2305297851562 2 528.230019 1054.44548 -0.21911 -0.00011574 0.61616 0.00032548 0.39705 0.00020973 528.230400370006 13.744 0.2839 17.133 17.031 17.315 3.388 60 33 3 0 0 0 0.47763 1 424 424 2.9952 1.3426 1 64686 45597 10044 28792 28805 52461 52461 -0.07956031032176725 TSDHYKDK 8 Unmodified _TSDHYKDK_ 0 0 0 REV__L1MB1_dup4625|chr12:118334167-118334593:+|1.552565852808412|0.0028588617565293|9.08|151.0|15|3|sense REV__L1MB1_dup4625|chr12:118334167-118334593:+|1.552565852808412|0.0028588617565293|9.08|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.235107421875 2 497.235439 992.456324 -0.5104 -0.00025379 0.46918 0.00023329 -0.04122 -2.0496E-05 497.2355977350678 23.152 0.58404 26.503 26.186 26.77 3.3503 88 46 2 0 0 0 0.82752 1 2967 2967 1.8442 0 1 115410 + 45598 25671 28793 28806 52462 52462 -0.040205838672363825 TSDPFFWR 8 Unmodified _TSDPFFWR_ 0 0 0 REV__L1PA8_dup5551|chr10:74347141-74353587:+|9.206058933214868|0.165036666181953|5.8|151.0|8|1|sense REV__L1PA8_dup5551|chr10:74347141-74353587:+|9.206058933214868|0.165036666181953|5.8|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 528.2528076171875 2 528.250892 1054.48723 NaN NaN NaN NaN NaN NaN NaN 114.26 1 117.85 117.35 118.35 3.5809 0 0 0 0.40746 1 28228 28228 0.69038 0 1 + 45599 30241 28794 28807 52463 52463 -0.03783385762335456 TSDWSIQR 8 Unmodified _TSDWSIQR_ 0 0 0 REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.7434997558594 2 496.743431 991.472308 -0.311 -0.00015449 0.4251 0.00021116 0.11409 5.6676E-05 496.74360463199633 22.841 0.5588 26.545 26.329 26.888 3.7042 81 50 2 0 0 0 0.82752 3 2765 2748;2765;2789 9.3474 0 1 103460 + 45600 22786 28795 28808 52464;52465;52466 52465 -0.023768776303199957 TSDYVVSFGI 10 Unmodified _TSDYVVSFGI_ 0 0 0 L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.268798828125 2 544.268947 1086.52334 0.49441 0.00026909 -0.13255 -7.2141E-05 0.36186 0.00019695 544.2687721263108 85.739 0.74321 89.355 88.995 89.738 3.6153 143 95 3 0 0 0 0.52083 1 21498 21498 9.3831 0 1 150550 45601 14436 28796 28809 52467 52467 -0.01645973376139409 TSDYVVSFGI 10 Unmodified _TSDYVVSFGI_ 0 0 0 L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.2689208984375 2 544.268947 1086.52334 0.52245 0.00028435 -0.27215 -0.00014813 0.25029 0.00013623 544.268726914147 85.763 0.65704 89.195 88.907 89.564 3.4329 142 85 2 0 0 0 0.40227 3 21396 21301;21332;21396 19.257 0 1 169520 45602 14436 28796 28809 52468;52469;52470 52470 -0.01645973376139409 TSDYVVSFGI 10 Unmodified _TSDYVVSFGI_ 0 0 0 L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.2689819335938 2 544.268947 1086.52334 0.46967 0.00025563 -0.12378 -6.7367E-05 0.34589 0.00018826 544.2688137391406 85.789 0.34154 89.161 88.882 89.223 3.3716 100 42 3 0 0 0 0.33585 2 21496 21458;21496 25.399 0 1 444980 45603 14436 28796 28809 52471;52472 52472 -0.01645973376139409 TSDYVVSFGI 10 Unmodified _TSDYVVSFGI_ 0 0 0 L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.7700805664062 2 544.268947 1086.52334 0.4701 0.00025586 -0.10587 -5.7624E-05 0.36423 0.00019824 544.2687525441403 85.91 0.3297 89.282 89.212 89.541 3.3716 63 34 2 0 0 0 0.33585 1 21568 21568 25.399 0 1 199060 45604 14436 28796 28809 52473 52473 -0.01645973376139409 TSDYVVSFGI 10 Unmodified _TSDYVVSFGI_ 0 0 0 L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|220|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 544.268947 1086.52334 0.47083 0.00025626 -0.14869 -8.0926E-05 0.32214 0.00017533 544.7704518623185 86.221 0.13425 89.593 89.541 89.676 3.3716 0.21185 4.5715E-05 NaN 19.257 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 134330 45605 14436 28796 28809 -0.01645973376139409 TSEMDLFW 8 Unmodified _TSEMDLFW_ 0 0 0 REV__Tigger1_dup1234|chr2:68211426-68212080:-|1.727951263336586|0.0270098093860634|6.0|151.0|10|2|sense REV__Tigger1_dup1234|chr2:68211426-68212080:-|1.727951263336586|0.0270098093860634|6.0|151.0|10|2|sense MSMS UPN47_class_I_Rep_1 2 514.7888793945312 2 514.723318 1027.43208 NaN NaN NaN NaN NaN NaN NaN 49.939 1 53.568 53.068 54.068 3.6285 0 0 0 0.40738 1 10907 10907 0.79363 0 1 + 45606 32375 28797 28810 52474 52474 -0.08053560345138067 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.M823Cfs*5|1|0.13|ENSG00000204560|chr6:30656230-30656230|G/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.M823Cfs*5|1|0.13|ENSG00000204560|chr6:30656230-30656230|G/-|frameshift_variant DHX16|p.M823Cfs*5|1|0.13|ENSG00000204560|chr6:30656230-30656230|G/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 562.8060913085938 2 562.806562 1123.59857 -0.06735 -3.7905E-05 0.030542 1.7189E-05 -0.036808 -2.0716E-05 562.8065685720185 28.278 0.58634 32.044 31.767 32.353 3.7662 79 46 2 0 0 0 0.45441 1 4353 4353 4.897 2.1618 1 97039 45607 658 28798 28811 52475 52475 0.04171628874951239 TSERTVLRY 9 Unmodified _TSERTVLRY_ 0 0 0 DHX16|p.M823Cfs*5|1|0.13|ENSG00000204560|chr6:30656230-30656230|G/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16 DHX16|p.M823Cfs*5|1|0.13|ENSG00000204560|chr6:30656230-30656230|G/-|frameshift_variant DHX16|p.M823Cfs*5|1|0.13|ENSG00000204560|chr6:30656230-30656230|G/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 562.8065795898438 2 562.806562 1123.59857 0.046619 2.6238E-05 0.15359 8.6443E-05 0.20021 0.00011268 562.8066577239085 28.402 0.61124 31.9 31.695 32.306 3.4986 88 50 2 0 0 0 0.38714 1 4447 4447 8.7454 1.4562 1 83562 45608 658 28798 28811 52476 52476 0.04171628874951239 TSFCRRLE 8 Unmodified _TSFCRRLE_ 0 0 0 REV__ENSG00000164604|ENST00000424100|GPR85 REV__ENSG00000164604|ENST00000424100|GPR85 MULTI-MSMS UPN48_class_I_Rep_3 7 506.2551574707031 2 506.255651 1010.49675 0.27079 0.00013709 -0.14426 -7.3034E-05 0.12653 6.4056E-05 506.2554313229208 110.42 0.53035 114.09 113.91 114.44 3.67 106 66 2 0 0 0 0.82752 2 26185 26185;26224 2.5775 0 1 177970 + 45609 20070 28799 28812 52477;52478 52477 -0.008079407484729018 TSFCRRLE 8 Unmodified _TSFCRRLE_ 0 0 0 REV__ENSG00000164604|ENST00000424100|GPR85 REV__ENSG00000164604|ENST00000424100|GPR85 MULTI-MATCH UPN48_class_I_Rep_1 5 2 506.255651 1010.49675 0.21178 0.00010721 -0.18918 -9.5775E-05 0.022591 1.1437E-05 506.25541400287995 110.47 0.45732 114.1 113.88 114.34 3.6326 0.0091736 2.8122E-05 NaN 2.5775 63 52 2 NaN NaN NaN NaN 0 NaN NaN 0 132130 + 45610 20070 28799 28812 -0.008079407484729018 TSFCRRLE 8 Unmodified _TSFCRRLE_ 0 0 0 REV__ENSG00000164604|ENST00000424100|GPR85 REV__ENSG00000164604|ENST00000424100|GPR85 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 506.255651 1010.49675 0.27079 0.00013709 -0.14426 -7.3034E-05 0.12653 6.4056E-05 506.2554313229208 110.42 0.53035 114.09 113.91 114.44 3.67 0.0029222 7.3605E-05 NaN 2.5775 106 66 2 NaN NaN NaN NaN 0 NaN NaN 0 177970 + 45611 20070 28799 28812 -0.008079407484729018 TSFDLTLGNK 10 Unmodified _TSFDLTLGNK_ 0 0 0 REV__HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|7|1|sense REV__HAL1b_dup3367|chr10:28566576-28567198:-|1.450132111178563|0.0287170452018146|5.66|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 548.2880249023438 2 548.287671 1094.56079 NaN NaN NaN NaN NaN NaN NaN 42.551 1 46.059 45.559 46.559 3.5079 0 0 0 0.53105 1 7883 7883 4.5289 0 1 + 45612 23451 28800 28813 52479 52479 0.017291178894765835 TSFLCKLFH 9 Unmodified _TSFLCKLFH_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MSMS UPN48_class_I_Rep_3 7 548.2863159179688 2 548.28642 1094.55829 NaN NaN NaN NaN NaN NaN NaN 42.424 1 46.066 45.566 46.566 3.6415 0 0 0 0.39518 1 7773 7773 1.8442 0 1 + 45613 19008 28801 28814 52480 52480 0.014789909508408527 TSFPHESTF 9 Unmodified _TSFPHESTF_ 0 0 0 nc|ENSG00000062194|Q86WP2-4|GPBP1;nc|ENSG00000062194|Q86WP2-3|GPBP1;ENSG00000062194|ENST00000506184|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1 nc|ENSG00000062194|Q86WP2-4|GPBP1 nc|ENSG00000062194|Q86WP2-4|GPBP1 MSMS UPN46_class_I_Rep_3 1 526.738037109375 2 526.737814 1051.46108 NaN NaN NaN NaN NaN NaN NaN 45.788 1 45.788 45.288 46.288 0 0 0 0 0.22485 1 9338 9338 14.838 0.93222 1 45614 974 28802 28815 52481 52481 -0.06259699724478196 TSFVGTLQY 9 Unmodified _TSFVGTLQY_ 0 0 0 nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;ENST00000342222.6_1_8:42151073-42188494:+|nuORF;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENSG00000213341|ENST00000370397|CHUK nc|ENSG00000104365|O14920-4|IKBKB nc|ENSG00000104365|O14920-4|IKBKB MULTI-MSMS UPN48_class_I_Rep_1 5 508.7591247558594 2 508.258382 1014.50221 0.35442 0.00018014 -3.266 -0.0016599 -2.9115 -0.0014798 508.2581188610272 63.202 0.51801 66.665 66.407 66.925 3.4625 74 35 3 0 0 0 0.14216 2 14211 14181;14211 26.268 0 1 105020 45615 1686 28803 28816 52482;52483 52483 -0.0044593868499305245 TSFVGTLQY 9 Unmodified _TSFVGTLQY_ 0 0 0 nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;ENST00000342222.6_1_8:42151073-42188494:+|nuORF;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENSG00000213341|ENST00000370397|CHUK nc|ENSG00000104365|O14920-4|IKBKB nc|ENSG00000104365|O14920-4|IKBKB MULTI-MSMS UPN48_class_I_Rep_2 6 508.2580871582031 2 508.258382 1014.50221 0.35978 0.00018286 -4.105 -0.0020864 -3.7452 -0.0019035 508.25796822638165 63.04 0.5038 66.514 66.278 66.782 3.4738 85 38 3 0 0 0 0.13244 2 14136 14136;14180 27.629 0 1 147370 45616 1686 28803 28816 52484;52485 52484 -0.0044593868499305245 TSGLNRGSTER 11 Unmodified _TSGLNRGSTER_ 0 0 0 HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|113|3|sense HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|113|3|sense HERV9NC-int_dup230|chr16:21631297-21636946:-|9.529223227440186|0.425496971765206|4.49|151.0|113|3|sense MSMS UPN48_class_I_Rep_2 6 589.0476684570312 2 589.299633 1176.58471 NaN NaN NaN NaN NaN NaN NaN 33.127 1 36.777 36.277 37.277 3.6497 0 0 0 0.38417 1 5197 5197 1.0715 0.27783 1 45617 8100 28804 28817 52486 52486 0.003483513758510526 TSGQPFHK 8 Unmodified _TSGQPFHK_ 0 0 0 nc|ENSG00000187609|Q8N9H8-3|EXD3;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;ENSG00000187609|ENST00000340951|EXD3 nc|ENSG00000187609|Q8N9H8-3|EXD3 nc|ENSG00000187609|Q8N9H8-3|EXD3 MSMS UPN46_class_I_Rep_3 1 450.7766418457031 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 90.929 1 90.929 90.429 91.429 0 0 0 0 0.40746 1 21939 21939 0.69038 0 1 45618 5196 28805 28818 52487 52487 -0.008839414508543086 TSHKFWYVV 9 Unmodified _TSHKFWYVV_ 0 0 0 L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|63|1|anti-sense L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|63|1|anti-sense L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|63|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 583.80322265625 2 583.803291 1165.59203 0.04656 2.7182E-05 -0.29335 -0.00017126 -0.24679 -0.00014408 583.8030613847345 28.236 0.62048 31.735 31.473 32.093 3.4986 78 55 2 0 0 0 0.50015 1 4390 4390 0.6015 0 1 70473 45619 10186 28806 28819 52488 52488 0.015857357142067485 TSHKFWYVV 9 Unmodified _TSHKFWYVV_ 0 0 0 L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|63|1|anti-sense L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|63|1|anti-sense L1MB1_dup4656|chr13:21085965-21087275:+|4.186979582114316|0.0042104673808855|9.96|146.0|63|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 583.8037719726562 2 583.803291 1165.59203 -0.20628 -0.00012043 -0.55465 -0.00032381 -0.76094 -0.00044424 583.8031281746207 28.531 0.68739 31.865 31.525 32.212 3.3338 75 59 2 0 0 0 0.50015 1 4403 4403 0.6015 0 1 60660 45620 10186 28806 28819 52489 52489 0.015857357142067485 TSHNSGCF 8 Unmodified _TSHNSGCF_ 0 0 0 REV__L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|64|1|anti-sense REV__L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|64|1|anti-sense MSMS UPN48_class_I_Rep_3 7 426.668212890625 2 426.668877 851.323201 NaN NaN NaN NaN NaN NaN NaN 72.103 1 75.63 75.13 76.13 3.5266 0 0 0 0.40753 1 16787 16787 0.6015 0 1 + 45621 25778 28807 28820 52490 52490 -0.1084072652473651 TSHQLDKI 8 Unmodified _TSHQLDKI_ 0 0 0 REV__ENSG00000184735|ENST00000327968|DDX53 REV__ENSG00000184735|ENST00000327968|DDX53 MULTI-MSMS UPN48_class_I_Rep_3 7 471.255859375 2 471.256174 940.497795 0.094492 4.453E-05 -0.63287 -0.00029824 -0.53837 -0.00025371 471.25572950617425 24.732 0.60722 28.501 28.148 28.755 3.769 100 72 2 0 0 0 0.82752 1 2957 2957 2.3027 0 1 71205 + 45622 20827 28808 28821 52491 52491 0.02516596892075995 TSHTTTTTTR 10 Unmodified _TSHTTTTTTR_ 0 0 0 REV__ENST00000500986.5_1_12:93960742-93965530:-|nuORF REV__ENST00000500986.5_1_12:93960742-93965530:-|nuORF MSMS UPN47_class_I_Rep_2 3 554.1759033203125 2 553.775459 1105.53637 NaN NaN NaN NaN NaN NaN NaN 33.753 1 37.193 36.693 37.693 3.4398 0 0 0 0.53105 1 6018 6018 0 0 1 + 45623 22689 28809 28822 52492 52492 -0.012181422640878736 TSIELHVL 8 Unmodified _TSIELHVL_ 0 0 0 nc|ENSG00000152672|Q8N1N0-2|CLEC4F;ENSG00000152672|ENST00000272367|CLEC4F nc|ENSG00000152672|Q8N1N0-2|CLEC4F nc|ENSG00000152672|Q8N1N0-2|CLEC4F MULTI-MSMS UPN47_class_I_Rep_1 2 456.2633056640625 2 456.263468 910.512382 0.054878 2.5039E-05 -0.089427 -4.0802E-05 -0.03455 -1.5764E-05 456.26333966144864 56.577 0.47753 60.034 59.636 60.113 3.4572 63 26 3 0 0 0 0.82752 1 12895 12895 28.173 0 1 672670 45624 3625 28810 28823 52493 52493 0.053546690402299646 TSIELHVL 8 Unmodified _TSIELHVL_ 0 0 0 nc|ENSG00000152672|Q8N1N0-2|CLEC4F;ENSG00000152672|ENST00000272367|CLEC4F nc|ENSG00000152672|Q8N1N0-2|CLEC4F nc|ENSG00000152672|Q8N1N0-2|CLEC4F MULTI-MSMS UPN47_class_I_Rep_2 3 456.2633056640625 2 456.263468 910.512382 -0.016371 -7.4696E-06 0.024642 1.1243E-05 0.0082705 3.7735E-06 456.26338821195407 56.868 0.97726 60.169 59.759 60.736 3.3009 141 78 3 0 0 0 0.82752 1 13083 13083 28.173 0 1 714300 45625 3625 28810 28823 52494 52494 0.053546690402299646 TSIEVWYTF 9 Unmodified _TSIEVWYTF_ 0 0 0 L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|95|2|anti-sense L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|95|2|anti-sense L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|95|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.279541015625 2 573.279315 1144.54408 0.51294 0.00029406 1.3505 0.0007742 1.8634 0.0010683 573.2800368576835 77.28 0.79124 80.881 80.602 81.394 3.6016 141 70 3 0 0 0 0.46869 1 18364 18364 3.9444 0 1 400290 45626 12241 28811 28824 52495 52495 -0.022413829964989418 TSIFTLTMMS 10 Unmodified _TSIFTLTMMS_ 0 0 0 nc|ENSG00000082556|P41145-2|OPRK1;ENSG00000116329|ENST00000234961|OPRD1;ENSG00000082556|ENST00000265572|OPRK1 nc|ENSG00000082556|P41145-2|OPRK1 nc|ENSG00000082556|P41145-2|OPRK1 MULTI-MSMS UPN47_class_I_Rep_1 2 566.7762451171875 2 566.27486 1130.53517 0.077999 4.4169E-05 -0.40384 -0.00022868 -0.32584 -0.00018452 566.7766466366959 44.488 0.97787 48.183 47.837 48.815 3.6951 202 67 4 0 0 0 0.51565 1 9259 9259 10.074 6.1295 1 326880 45627 1230 28812 28825 52496 52496 -0.02487815948802563 TSIFTLTMMS 10 Unmodified _TSIFTLTMMS_ 0 0 0 nc|ENSG00000082556|P41145-2|OPRK1;ENSG00000116329|ENST00000234961|OPRD1;ENSG00000082556|ENST00000265572|OPRK1 nc|ENSG00000082556|P41145-2|OPRK1 nc|ENSG00000082556|P41145-2|OPRK1 MULTI-MSMS UPN47_class_I_Rep_3 4 566.7759399414062 2 566.27486 1130.53517 0.22293 0.00012624 -1.1124 -0.00062992 -0.88946 -0.00050368 566.7764552655209 45 1.3025 48.244 47.786 49.089 3.2441 231 82 5 0 0 0 0.56033 1 9471 9471 3.5965 0 1 231580 45628 1230 28812 28825 52497 52497 -0.02487815948802563 TSIIKPVW 8 Unmodified _TSIIKPVW_ 0 0 0 L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|55|3|sense L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|55|3|sense L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|55|3|sense MSMS UPN48_class_I_Rep_3 7 472.6180419921875 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 93.524 1 97.415 96.915 97.915 3.8914 0 0 0 0.40604 1 22165 22165 2.5775 0.27475 1 45629 10663 28813 28826 52498 52498 0.08027849799555042 TSIIRPKE 8 Unmodified _TSIIRPKE_ 0 0 0 L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|147|3|sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|147|3|sense L1M2a1_dup84|chr11:76941574-76947179:-|1.4998598223116069|0.0444447796345089|5.08|151.0|147|3|sense MSMS UPN46_class_I_Rep_3 1 472.28155517578125 2 472.282192 942.549831 NaN NaN NaN NaN NaN NaN NaN 97.278 1 97.278 96.778 97.778 0 0 0 0 0.40625 1 23664 23664 2.3027 0 1 45630 8738 28814 28827 52499 52499 0.07625760305847962 TSILLLRNTKH 11 Unmodified _TSILLLRNTKH_ 0 0 0 REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 432.8852233886719 3 432.597983 1294.77212 -0.3795 -0.00016417 -0.60576 -0.00026205 -0.98527 -0.00042622 432.5976421803768 100.88 0.10069 104.34 104.28 104.38 3.4671 23 13 2 0 0 0 22.551 1 24897 24897 0.08335 0.010087 1 120250 + 45631 22905 28815 28828 52500 52500 0.13652414651210165 TSILLLRNTKH 11 Unmodified _TSILLLRNTKH_ 0 0 0 REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 432.8848876953125 3 432.597983 1294.77212 0.13262 5.737E-05 -1.3203 -0.00057117 -1.1877 -0.0005138 432.5973258191875 101.54 0.11217 105.35 105.31 105.42 3.8153 18 16 2 0 0 0 22.551 1 24005 24005 0.08335 0.08335 1 303090 + 45632 22905 28815 28828 52501 52501 0.13652414651210165 TSILLLRNTKH 11 Unmodified _TSILLLRNTKH_ 0 0 0 REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 3 432.597983 1294.77212 0.13939 6.0299E-05 -3.2013 -0.0013849 -3.0619 -0.0013246 432.59677743518847 105.59 0.043472 105.59 105.57 105.61 0 0.017907 -0.0028515 NaN 0.08335 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 60337 + 45633 22905 28815 28828 0.13652414651210165 TSILLLRNTKH 11 Unmodified _TSILLLRNTKH_ 0 0 0 REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 432.597983 1294.77212 -0.21409 -9.2617E-05 -0.62675 -0.00027113 -0.84085 -0.00036375 432.59774508000623 102.12 0.034538 105.63 105.62 105.65 3.5151 0.05979 0.00048965 NaN 0.08335 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 43759 + 45634 22905 28815 28828 0.13652414651210165 TSILLLRNTKH 11 Unmodified _TSILLLRNTKH_ 0 0 0 REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 3 432.597983 1294.77212 -0.069509 -3.0069E-05 -1.1047 -0.00047789 -1.1742 -0.00050796 432.59750472725597 102.11 0.083237 105.72 105.7 105.78 3.612 0.14291 -0.00013062 NaN 0.08335 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 47809 + 45635 22905 28815 28828 0.13652414651210165 TSILRKKDG 9 Unmodified _TSILRKKDG_ 0 0 0 ENST00000529397.5_1_11:120894822-120916410:+|nuORF ENST00000529397.5_1_11:120894822-120916410:+|nuORF ENST00000529397.5_1_11:120894822-120916410:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 509.3057556152344 2 509.306198 1016.59784 0.3138 0.00015982 -0.4192 -0.0002135 -0.1054 -5.368E-05 509.30589033709197 83.946 0.61351 87.628 87.304 87.918 3.6814 113 65 2 0 0 0 0.50088 1 19910 19910 0.52476 0 1 209530 45636 7284 28816 28829 52502 52502 0.09020834225896124 TSILRWAK 8 Unmodified _TSILRWAK_ 0 0 0 nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL;ENSG00000162551|ENST00000374840|ALPL nc|ENSG00000162551|P05186-2|ALPL nc|ENSG00000162551|P05186-2|ALPL MULTI-MSMS UPN48_class_I_Rep_1 5 487.7916259765625 2 487.792727 973.5709 0.18092 8.8252E-05 -0.79756 -0.00038904 -0.61663 -0.00030079 487.79192990158776 74.934 0.86096 78.424 77.821 78.682 3.49 125 91 2 0 0 0 0.82752 1 17617 17617 0.69038 0 1 180270 45637 3940 28817 28830 52503 52503 0.0830577040536582 TSKFYMWFYF 10 Unmodified _TSKFYMWFYF_ 0 0 0 ENST00000498257.5_1_6:129811877-129812174:+|nuORF ENST00000498257.5_1_6:129811877-129812174:+|nuORF ENST00000498257.5_1_6:129811877-129812174:+|nuORF MSMS UPN47_class_I_Rep_3 4 474.2820739746094 3 473.886253 1418.63693 NaN NaN NaN NaN NaN NaN NaN 13.943 1 17.313 16.813 17.813 3.3697 0 0 0 0.53105 1 430 430 0.15932 0.064481 1 45638 7119 28818 28831 52504 52504 -0.055642015347530105 TSKKGKGK 8 Unmodified _TSKKGKGK_ 0 0 0 nc|ENSG00000101115|Q9UJQ4-2|SALL4;ENSG00000101115|ENST00000217086|SALL4 nc|ENSG00000101115|Q9UJQ4-2|SALL4 nc|ENSG00000101115|Q9UJQ4-2|SALL4 MULTI-MSMS UPN46_class_I_Rep_3 1 417.26434326171875 2 417.263802 832.513051 0.086344 3.6028E-05 1.2249 0.0005111 1.3112 0.00054713 417.2642261386762 107.88 0.17763 107.88 107.83 108 0 30 15 3 0 0 0 0.82752 1 26313 26313 0 0 1 33912000 45639 1547 28819 28832 52505 52505 0.09009508479948636 TSKKITTK 8 Unmodified _TSKKITTK_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN47_class_I_Rep_1 2 453.78369140625 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 49.994 1 53.622 53.122 54.122 3.6285 0 0 0 0.40753 1 10924 10924 0.6015 0 1 45640 1387 28820 28833 52506 52506 0.0980264444859813 TSKKKLKPKR 10 Unmodified _TSKKKLKPKR_ 0 0 0 REV__HAL1ME_dup3037|chr5:132452672-132452995:-|1.2387979521843986|0.0923812672956589|3.75|151.0|2|1|sense REV__HAL1ME_dup3037|chr5:132452672-132452995:-|1.2387979521843986|0.0923812672956589|3.75|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 405.2732238769531 3 405.274952 1212.80303 NaN NaN NaN NaN NaN NaN NaN 51.462 1 51.462 50.962 51.962 0 0 0 0 0.53105 1 10942 10942 0.62683 0.12087 1 + 45641 23491 28821 28834 52507 52507 0.20513612756121802 TSKKLAKH 8 Unmodified _TSKKLAKH_ 0 0 0 ENST00000466165.1_1_2:179312230-179315757:-|nuORF;ENST00000470200.5_1_2:179312233-179316155:-|nuORF;ENST00000460433.5_1_2:179312233-179315416:-|nuORF;nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA ENST00000466165.1_1_2:179312230-179315757:-|nuORF ENST00000466165.1_1_2:179312230-179315757:-|nuORF MSMS UPN47_class_I_Rep_1 2 456.7842712402344 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 20.186 1 23.798 23.298 24.298 3.6118 0 0 0 0.40625 1 1981 1981 2.3027 0 1 45642 4882 28822 28835 52508 52508 0.09593483888306764 TSKLKYVL 8 Unmodified _TSKLKYVL_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_1 2 476.296875 2 476.29731 950.580068 -0.31226 -0.00014873 -0.63371 -0.00030184 -0.94598 -0.00045057 476.29699692203985 34.595 0.74122 38.281 37.963 38.704 3.6859 73 59 2 0 0 0 0.82752 1 6269 6269 7.2892 2.5332 1 110640 45643 1248 28823 28836 52509 52509 0.10280118971036245 TSKLKYVL 8 Unmodified _TSKLKYVL_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_2 3 476.29705810546875 2 476.29731 950.580068 -0.26676 -0.00012705 -0.55763 -0.0002656 -0.82438 -0.00039265 476.29702455530116 34.947 0.83934 38.372 38.059 38.898 3.4253 71 58 2 0 0 0 0.82752 1 6376 6376 6.7232 1.4925 1 90040 45644 1248 28823 28836 52510 52510 0.10280118971036245 TSKLKYVL 8 Unmodified _TSKLKYVL_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS UPN47_class_I_Rep_3 4 476.2967224121094 2 476.29731 950.580068 -0.50721 -0.00024158 -0.19805 -9.4329E-05 -0.70526 -0.00033591 476.2971699993705 35.228 0.79498 38.492 38.162 38.957 3.2639 86 54 2 0 0 0 0.82752 2 6462 6462;6499 9.3831 2.66 1 111220 45645 1248 28823 28836 52511;52512 52511 0.10280118971036245 TSKRRFRQW 9 Unmodified _TSKRRFRQW_ 0 0 0 REV__ENSG00000117834|ENST00000438567|SLC5A9 REV__ENSG00000117834|ENST00000438567|SLC5A9 MSMS UPN48_class_I_Rep_1 5 632.8555297851562 2 632.854712 1263.69487 NaN NaN NaN NaN NaN NaN NaN 71.565 1 75.031 74.531 75.531 3.466 0 0 0 0.32573 1 16740 16740 9.3831 2.66 1 + 45646 18642 28824 28837 52513 52513 0.0735724122555439 TSKVIELVIKK 11 Unmodified _TSKVIELVIKK_ 0 0 0 L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|29|3|sense L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|29|3|sense L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 629.130615234375 2 629.410663 1256.80677 NaN NaN NaN NaN NaN NaN NaN 26.575 1 26.575 26.075 27.075 0 0 0 0 0.38417 1 3819 3819 0 0 1 45647 10910 28825 28838 52514 52514 0.18864237739285272 TSKVIELVIKK 11 Unmodified _TSKVIELVIKK_ 0 0 0 L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|29|3|sense L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|29|3|sense L1MB8_dup11151|chr11:77973145-77974230:-|1.0914084479772417|0.0142539016670907|6.26|151.0|29|3|sense MSMS UPN48_class_I_Rep_2 6 629.41064453125 2 629.410663 1256.80677 NaN NaN NaN NaN NaN NaN NaN 111.13 1 114.8 114.3 115.3 3.6685 0 0 0 0.38417 1 26432 26432 0 0 1 45648 10910 28825 28838 52515 52515 0.18864237739285272 TSKYLLEEW 9 Unmodified _TSKYLLEEW_ 0 0 0 ENST00000468063.1_1_2:95537336-95538738:+|nuORF;ENSG00000163060|ENST00000295201|TEKT4 ENST00000468063.1_1_2:95537336-95538738:+|nuORF ENST00000468063.1_1_2:95537336-95538738:+|nuORF MSMS UPN48_class_I_Rep_1 5 584.7960205078125 2 584.797872 1167.58119 NaN NaN NaN NaN NaN NaN NaN 113.29 1 116.92 116.42 117.42 3.6314 0 0 0 0.39428 1 27519 27519 2.0598 0 1 45649 3978 28826 28839 52516 52516 0.0041028854927844804 TSLDLGLR 8 Unmodified _TSLDLGLR_ 0 0 0 ENST00000576156.1_1_17:79871830-79872373:-|nuORF ENST00000576156.1_1_17:79871830-79872373:-|nuORF ENST00000576156.1_1_17:79871830-79872373:-|nuORF MSMS UPN48_class_I_Rep_3 7 437.7513122558594 2 437.753267 873.491981 NaN NaN NaN NaN NaN NaN NaN 40.822 1 44.473 43.973 44.973 3.6509 0 0 0 0.4044 1 7306 7306 4.756 0 1 45650 7531 28827 28840 52517 52517 0.05017498380414054 TSLFAIFWT 9 Unmodified _TSLFAIFWT_ 0 0 0 REV__L1ME1_dup16480|chr9:77964124-77964807:+|1.1465391715107949|0.0107746103329841|6.73|151.0|29|1|anti-sense REV__L1ME1_dup16480|chr9:77964124-77964807:+|1.1465391715107949|0.0107746103329841|6.73|151.0|29|1|anti-sense MSMS UPN46_class_I_Rep_3 1 543.1272583007812 2 543.286943 1084.55933 NaN NaN NaN NaN NaN NaN NaN 48.021 1 48.021 47.521 48.521 0 0 0 0 0.39518 1 9971 9971 1.8442 0 1 + 45651 27634 28828 28841 52518 52518 0.020435285913663392 TSLIHNIS 8 Unmodified _TSLIHNIS_ 0 0 0 REV__nc|ENSG00000156970|O60566-2|BUB1B REV__nc|ENSG00000156970|O60566-2|BUB1B MSMS UPN46_class_I_Rep_3 1 442.7442626953125 2 442.745442 883.476331 NaN NaN NaN NaN NaN NaN NaN 62.283 1 62.283 61.783 62.783 0 0 0 0 0.40746 1 13918 13918 0.69038 0 1 + 45652 19813 28829 28842 52519 52519 0.029932118633610116 TSLIKTCKR 9 Unmodified _TSLIKTCKR_ 0 0 0 L1ME4c_dup6421|chr12:101786726-101787514:+|1.1965547722224927|0.1461939531916017|3.03|151.0|1|1|sense L1ME4c_dup6421|chr12:101786726-101787514:+|1.1965547722224927|0.1461939531916017|3.03|151.0|1|1|sense L1ME4c_dup6421|chr12:101786726-101787514:+|1.1965547722224927|0.1461939531916017|3.03|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 525.3101196289062 2 525.310426 1048.6063 NaN NaN NaN NaN NaN NaN NaN 98.533 1 102.3 101.8 102.8 3.7707 0 0 0 0.37692 1 23407 23407 6.2058 0 1 45653 12954 28830 28843 52520 52520 0.08394064870867624 TSLIVQVLFN 10 Unmodified _TSLIVQVLFN_ 0 0 0 L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|50|3|anti-sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|50|3|anti-sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.3309936523438 2 567.331882 1132.64921 NaN NaN NaN NaN NaN NaN NaN 81.304 1 84.866 84.366 85.366 3.5624 0 0 0 0.53105 1 19383 19383 3.2813 0 1 45654 11808 28831 28844 52521 52521 0.0881915819995811 TSLKEKHKI 9 Unmodified _TSLKEKHKI_ 0 0 0 ENSG00000140396.13,NCOA2,chr8,-,I15.1,70144849,70148272|31|8.73|1|intron;ENSG00000140396.13,NCOA2,chr8,-,I15.1,70144849,70148272|31|8.73|3|intron;ENSG00000140396.13,NCOA2,chr8,-,I25.1,70113644,70121301|41|9.8|4|intron;ENSG00000140396|ENST00000452400|NCOA2;ENSG00000140396.13,NCOA2,chr8,-,I25.1,70113644,70121301|41|9.8|2|intron ENSG00000140396.13,NCOA2,chr8,-,I15.1,70144849,70148272|31|8.73|1|intron ENSG00000140396.13,NCOA2,chr8,-,I15.1,70144849,70148272|31|8.73|1|intron MULTI-MSMS UPN48_class_I_Rep_2 6 542.3307495117188 2 542.329673 1082.64479 0.57901 0.00031401 0.070279 3.8114E-05 0.64929 0.00035213 542.3295156465063 57.979 0.39377 61.493 61.321 61.715 3.5142 42 24 3 0 0 0 0.24936 1 12627 12627 17.113 0 1 361610 45655 3172 28832 28845 52522 52522 0.10677693777029162 TSLLDFPIR 9 Unmodified _TSLLDFPIR_ 0 0 0 REV__nc|ENSG00000100852|Q13017-2|ARHGAP5 REV__nc|ENSG00000100852|Q13017-2|ARHGAP5 MSMS UPN48_class_I_Rep_2 6 531.3016967773438 2 531.303124 1060.5917 NaN NaN NaN NaN NaN NaN NaN 65.69 1 69.172 68.672 69.672 3.4824 0 0 0 0.39518 1 14950 14950 1.8442 0 1 + 45656 18134 28833 28846 52523 52523 0.06382315994369492 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3431396484375 2 589.342978 1176.6714 0.54476 0.00032105 0.086861 5.1191E-05 0.63163 0.00037224 589.342881301831 89.679 0.45556 89.679 89.439 89.895 0 115 42 4 0 0 0 0.62748 1 21558 21558 4.5289 4.5289 1 2233600 45657 16648 28834 28847 52524 52524 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MSMS UPN48_class_I_Rep_1 5 589.34326171875 2 589.342978 1176.6714 0.42875 0.00025268 0.067706 3.9902E-05 0.49646 0.00029258 589.3428753966093 83.391 1.0122 86.978 86.311 87.323 3.5871 214 113 2 0 0 0 0.67398 1 19971 19971 1.0715 1.0715 1 242860 45658 16648 28834 28847 52525 52525 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MSMS UPN48_class_I_Rep_1 5 589.3432006835938 2 589.342978 1176.6714 0.42433 0.00025008 0.26933 0.00015873 0.69366 0.0004088 589.3429974177485 85.116 2.1657 88.722 87.999 90.165 3.6059 491 275 3 0 0 0 0.62748 4 20571 20571;20584;20617;20624 4.5289 4.5289 1 932810 45659 16648 28834 28847 52526;52527;52528;52529 52526 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MSMS UPN48_class_I_Rep_2 6 589.34375 2 589.342978 1176.6714 0.48075 0.00028333 0.16599 9.7823E-05 0.64674 0.00038115 589.3429604514001 85.015 1.819 88.708 88.505 90.324 3.6937 396 235 2 0 0 0 0.52578 4 20490 20407;20442;20458;20490 7.1017 7.1017 1 1023500 45660 16648 28834 28847 52530;52531;52532;52533 52533 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MSMS UPN48_class_I_Rep_3 7 589.3432006835938 2 589.342978 1176.6714 0.53363 0.00031449 0.15883 9.3604E-05 0.69246 0.0004081 589.3429622980241 85.118 1.7719 88.867 88.425 90.197 3.7494 459 233 3 0 0 0 0.62748 3 20354 20354;20366;20412 4.5289 4.5289 1 836890 45661 16648 28834 28847 52534;52535;52536 52534 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 589.342978 1176.6714 0.54451 0.0003209 0.17321 0.00010208 0.71772 0.00042298 589.342956137026 88.595 0.27532 88.595 88.522 88.798 0 -0.10063 -4.0464E-06 NaN 7.1017 71 32 3 NaN NaN NaN NaN 0 NaN NaN 0 1878000 45662 16648 28834 28847 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 589.342978 1176.6714 0.55471 0.00032692 0.12296 7.2465E-05 0.67767 0.00039938 589.3429171575262 85.201 1.8101 88.624 88.454 90.264 3.4232 -0.071054 -6.3279E-05 NaN 7.1017 453 250 2 NaN NaN NaN NaN 0 NaN NaN 0 630230 45663 16648 28834 28847 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 589.342978 1176.6714 0.48522 0.00028596 0.50797 0.00029937 0.99319 0.00058533 589.3430572768855 85.269 0.19194 88.641 88.496 88.688 3.3716 -0.054736 0.00039052 NaN 7.1017 41 29 2 NaN NaN NaN NaN 0 NaN NaN 0 717520 45664 16648 28834 28847 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 589.342978 1176.6714 0.48075 0.00028333 0.16599 9.7823E-05 0.64674 0.00038115 589.3429604514001 85.015 1.819 88.708 88.505 90.324 3.6937 0.01291 -1.2563E-05 NaN 7.1017 396 235 2 NaN NaN NaN NaN 0 NaN NaN 0 1023500 45665 16648 28834 28847 0.09013337877718186 TSLLRTSLSIS 11 Unmodified _TSLLRTSLSIS_ 0 0 0 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 nc|ENSG00000100150|O75140-5|DEPDC5 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 589.342978 1176.6714 0.53363 0.00031449 0.15883 9.3604E-05 0.69246 0.0004081 589.3429622980241 85.118 1.7719 88.867 88.425 90.197 3.7494 0.17207 -2.1002E-05 NaN 7.1017 459 233 3 NaN NaN NaN NaN 0 NaN NaN 0 836890 45666 16648 28834 28847 0.09013337877718186 TSLQRKRH 8 Unmodified _TSLQRKRH_ 0 0 0 ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENST00000597589.5_1_19:47177782-47200527:-|nuORF ENST00000597589.5_1_19:47177782-47200527:-|nuORF MSMS UPN48_class_I_Rep_3 7 513.30419921875 2 513.301781 1024.58901 NaN NaN NaN NaN NaN NaN NaN 58.286 1 61.818 61.318 62.318 3.5317 0 0 0 0.40625 1 12616 12616 2.3027 0 1 45667 7653 28835 28848 52537 52537 0.07769905380087039 TSLQWLEF 8 Unmodified _TSLQWLEF_ 0 0 0 L1MD1_dup3961|chrX:73953198-73953816:+|3.656385575861501|0.1705507129230436|4.42|151.0|23|1|anti-sense L1MD1_dup3961|chrX:73953198-73953816:+|3.656385575861501|0.1705507129230436|4.42|151.0|23|1|anti-sense L1MD1_dup3961|chrX:73953198-73953816:+|3.656385575861501|0.1705507129230436|4.42|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_2 6 512.2627563476562 2 512.260925 1022.5073 NaN NaN NaN NaN NaN NaN NaN 75.999 1 79.6 79.1 80.1 3.6011 0 0 0 0.40625 1 17939 17939 2.3027 0 1 45668 11941 28836 28849 52538 52538 -0.0030563482238221695 TSLRIMVF 8 Unmodified _TSLRIMVF_ 0 0 0 L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|206|1|anti-sense L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|206|1|anti-sense L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|206|1|anti-sense MSMS UPN47_class_I_Rep_1 2 483.7773132324219 2 483.775688 965.536823 NaN NaN NaN NaN NaN NaN NaN 28.975 1 32.733 32.233 33.233 3.7578 0 0 0 0.40738 1 4537 4537 0.79363 0 1 45669 15089 28837 28850 52539 52539 0.05267605922119856 TSLSIPHFF 9 Unmodified _TSLSIPHFF_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|382|3|anti-sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|382|3|anti-sense MSMS UPN47_class_I_Rep_2 3 524.7777709960938 2 524.776742 1047.53893 NaN NaN NaN NaN NaN NaN NaN 26.495 1 29.99 29.49 30.49 3.4945 0 0 0 0.39428 1 3842 3842 2.0598 0 1 + 45670 24782 28838 28851 52540 52540 0.01706357931561797 TSLTFPGSRP 10 Unmodified _TSLTFPGSRP_ 0 0 0 nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57-2|DNAH3 nc|ENSG00000158486|Q8TD57-3|DNAH3 nc|ENSG00000158486|Q8TD57-3|DNAH3 MULTI-MSMS UPN46_class_I_Rep_3 1 531.7828369140625 2 531.782556 1061.55056 0.29721 0.00015805 0.011877 6.3159E-06 0.30909 0.00016437 531.7823814644987 47.248 0.59982 47.248 46.892 47.492 0 104 59 2 0 0 0 0.30128 2 9759 9725;9759 32.786 2.1491 1 357400 45671 16721 28839 28852 52541;52542 52542 0.022245549549097632 TSLTRALAI 9 Unmodified _TSLTRALAI_ 0 0 0 REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|127|1|anti-sense REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|127|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 473.2909240722656 2 473.290017 944.565481 0.25423 0.00012032 -0.32252 -0.00015264 -0.06829 -3.2321E-05 473.2899299035837 64.005 0.23454 67.479 67.324 67.559 3.4743 18 14 2 0 0 0 0.42249 1 14407 14407 6.7232 0 1 109110 + 45672 25468 28840 28853 52543 52543 0.09098046822873584 TSLTRALAI 9 Unmodified _TSLTRALAI_ 0 0 0 REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|127|1|anti-sense REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|127|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 473.2898864746094 2 473.290017 944.565481 0.23098 0.00010932 -0.72156 -0.00034151 -0.49058 -0.00023219 473.2896345160855 63.763 0.25449 67.272 67.213 67.468 3.5091 22 18 2 0 0 0 0.32682 1 14285 14285 12.241 0 1 170830 + 45673 25468 28840 28853 52544 52544 0.09098046822873584 TSLVIVYL 8 Unmodified _TSLVIVYL_ 0 0 0 REV__L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|345|3|anti-sense REV__L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|345|3|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2795715332031 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 53.299 1 56.494 55.994 56.994 3.1948 0 0 0 0.40746 1 12012 12012 0.69038 0 1 + 45674 25013 28841 28854 52545 52545 0.08561027705434299 TSLVIWKT 8 Unmodified _TSLVIWKT_ 0 0 0 Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 474.28228759765625 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 110.33 1 113.92 113.42 114.42 3.5835 0 0 0 0.40625 1 27203 27203 2.3027 0 1 45675 465 28842 28855 52546 52546 0.07335545936962262 TSLVIWKT 8 Unmodified _TSLVIWKT_ 0 0 0 Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 474.2821350097656 2 474.28166 946.548768 0.30156 0.00014303 1.5057 0.00071414 1.8073 0.00085716 474.2820994890484 116.55 0.086212 120.04 120.01 120.09 3.4965 9 7 3 0 0 0 0.82752 1 28460 28460 2.3027 0 1 161290 45676 465 28842 28855 52547 52547 0.07335545936962262 TSLVIWKT 8 Unmodified _TSLVIWKT_ 0 0 0 Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense MSMS UPN48_class_I_Rep_2 6 474.2821350097656 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 109.82 1 113.49 112.99 113.99 3.6715 0 0 0 0.40625 1 26147 26147 2.3027 0 1 45677 465 28842 28855 52548 52548 0.07335545936962262 TSLVIWKT 8 Unmodified _TSLVIWKT_ 0 0 0 Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|43|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 474.28166 946.548768 0.082528 3.9141E-05 1.1355 0.00053853 1.218 0.00057767 474.2822147627824 116.61 0.022079 120.07 120.05 120.07 3.462 0.011912 -9.4254E-06 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 75123 45678 465 28842 28855 0.07335545936962262 TSLWDHDMV 9 Unmodified _TSLWDHDMV_ 0 0 0 REV__nc|ENSG00000007516|O94812-7|BAIAP3 REV__nc|ENSG00000007516|O94812-7|BAIAP3 MULTI-MSMS UPN47_class_I_Rep_3 4 552.2442016601562 2 552.244949 1102.47534 -0.091373 -5.046E-05 -0.0037176 -2.053E-06 -0.095091 -5.2513E-05 552.2449058013806 36.555 0.62595 39.802 39.499 40.125 3.247 52 39 2 0 0 0 0.48846 1 6897 6897 1.8442 0 1 71552 + 45679 17549 28843 28856 52549 52549 -0.07179370567837395 TSLWVHLV 8 Unmodified _TSLWVHLV_ 0 0 0 REV__L1MC1_dup5852|chr7:30215170-30217308:+|1.190941174902331|0.0976532505338377|3.61|151.0|53|3|sense REV__L1MC1_dup5852|chr7:30215170-30217308:+|1.190941174902331|0.0976532505338377|3.61|151.0|53|3|sense MSMS UPN47_class_I_Rep_2 3 477.77398681640625 2 477.774003 953.533452 NaN NaN NaN NaN NaN NaN NaN 64.075 1 67.33 66.83 67.83 3.2556 0 0 0 0.40364 1 15240 15240 5.7604 0 1 + 45680 26586 28844 28857 52550 52550 0.05482679139765878 TSMKKCSTS 9 Unmodified _TSMKKCSTS_ 0 0 0 L1PB_dup296|chr3:136698041-136698657:+|1.630532110106472|0.0995769697413309|4.03|151.0|20|3|sense L1PB_dup296|chr3:136698041-136698657:+|1.630532110106472|0.0995769697413309|4.03|151.0|20|3|sense L1PB_dup296|chr3:136698041-136698657:+|1.630532110106472|0.0995769697413309|4.03|151.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 486.7276611328125 2 486.728077 971.441602 NaN NaN NaN NaN NaN NaN NaN 28.78 1 28.78 28.28 29.28 0 0 0 0 0.39518 1 4468 4468 1.8442 0.6509 1 45681 14989 28845 28858 52551 52551 -0.04526115331236724 TSNNECDNDEC 11 Unmodified _TSNNECDNDEC_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS UPN46_class_I_Rep_3 1 622.1954956054688 2 622.195524 1242.3765 NaN NaN NaN NaN NaN NaN NaN 117.78 1 117.78 117.28 118.28 0 0 0 0 0.38417 1 29209 29209 1.0715 0.5467 1 + 45682 19503 28846 28859 52552 52552 -0.23499806385711963 TSPNTSTLLEL 11 Unmodified _TSPNTSTLLEL_ 0 0 0 REV__AluSz_dup63026|chr11:62797846-62798143:+|1.1355491195154903|0.351147529487861|1.69|151.0|23|3|anti-sense REV__AluSz_dup63026|chr11:62797846-62798143:+|1.1355491195154903|0.351147529487861|1.69|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 588.3129272460938 2 588.311343 1174.60813 NaN NaN NaN NaN NaN NaN NaN 73.107 1 76.588 76.088 77.088 3.4812 0 0 0 0.38417 1 17205 17205 2.2828 0.43854 1 + 45683 17205 28847 28860 52553 52553 0.027813523698114295 TSPNYTPTSP 10 Unmodified _TSPNYTPTSP_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-SECPEP UPN47_class_I_Rep_2 3 533.2716674804688 2 532.748379 1063.4822 0.25369 0.00013515 -0.2292 -0.00012211 0.024484 1.3044E-05 532.7481546272478 49.106 0.54678 52.453 52.2 52.746 3.3465 53 37 2 0 0 0 0.84575 1 10672 10672 5.7319 0 1 66586 45684 4910 28848 28861 52554 52554 -0.04699734415612511 TSPQDFPFYY 10 Unmodified _TSPQDFPFYY_ 0 0 0 ENST00000484339.1_1_1:26349695-26357853:+|nuORF;ENSG00000158008|ENST00000374280|EXTL1 ENST00000484339.1_1_1:26349695-26357853:+|nuORF ENST00000484339.1_1_1:26349695-26357853:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 632.7794799804688 2 632.779679 1263.5448 0.4712 0.00029817 -0.17778 -0.0001125 0.29342 0.00018567 632.7795183591093 77.042 0.67439 80.311 80.051 80.725 3.269 130 72 2 0 0 0 0.55448 1 19115 19115 4.897 0 1 153630 45685 3785 28849 28862 52555 52555 -0.07642588347425772 TSPSGPGYH 9 Unmodified _TSPSGPGYH_ 0 0 0 ENSG00000107566|ENST00000421367|ERLIN1 ENSG00000107566|ENST00000421367|ERLIN1 ENSG00000107566|ENST00000421367|ERLIN1 MULTI-MSMS UPN47_class_I_Rep_3 4 451.7035217285156 2 451.703774 901.392996 -0.94492 -0.00042682 0.23794 0.00010748 -0.70698 -0.00031935 451.70379501620243 23.906 0.61951 27.257 27.041 27.66 3.3509 74 46 2 0 0 0 0.45688 1 3190 3190 4.756 1.8668 1 67091 45686 1821 28850 28863 52556 52556 -0.061645245844715646 TSPSQPHRRM 10 Unmodified _TSPSQPHRRM_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MSMS UPN47_class_I_Rep_1 2 598.8016357421875 2 598.801288 1195.58802 NaN NaN NaN NaN NaN NaN NaN 63.337 1 66.696 66.196 67.196 3.3595 0 0 0 0.53105 1 14980 14980 3.5965 0 1 45687 901 28851 28864 52557 52557 -0.001946770511494833 TSPSYKYTL 9 Unmodified _TSPSYKYTL_ 0 0 0 nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9 nc|ENSG00000048052|Q9UKV0-11|HDAC9 nc|ENSG00000048052|Q9UKV0-11|HDAC9 MULTI-MSMS UPN48_class_I_Rep_1 5 530.271484375 2 530.27149 1058.52843 0.39513 0.00020953 -0.40887 -0.00021681 -0.013739 -7.2857E-06 530.2711535544212 56.202 0.53719 59.703 59.434 59.971 3.5014 61 42 2 0 0 0 0.23293 1 12072 12072 18.146 0 1 122110 45688 893 28852 28865 52558 52558 0.0015033048646273528 TSPSYKYTL 9 Unmodified _TSPSYKYTL_ 0 0 0 nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9 nc|ENSG00000048052|Q9UKV0-11|HDAC9 nc|ENSG00000048052|Q9UKV0-11|HDAC9 MULTI-MSMS UPN48_class_I_Rep_3 7 530.7732543945312 2 530.27149 1058.52843 0.38758 0.00020552 -0.47427 -0.00025149 -0.086697 -4.5973E-05 530.2711437017281 56.081 0.46093 59.636 59.366 59.827 3.5554 68 39 2 0 0 0 0.39745 1 11992 11992 8.1555 0 1 182250 45689 893 28852 28865 52559 52559 0.0015033048646273528 TSQAPFWP 8 Unmodified _TSQAPFWP_ 0 0 0 REV__ENST00000489928.1_1_14:23080555-23081103:+|nuORF REV__ENST00000489928.1_1_14:23080555-23081103:+|nuORF MSMS UPN48_class_I_Rep_3 7 467.29541015625 2 467.226885 932.439217 NaN NaN NaN NaN NaN NaN NaN 86.726 1 90.516 90.016 91.016 3.7905 0 0 0 0.40738 1 20582 20582 0.79363 0 1 + 45690 22623 28853 28866 52560 52560 -0.029704596823876273 TSQAPFWP 8 Unmodified _TSQAPFWP_ 0 0 0 REV__ENST00000489928.1_1_14:23080555-23081103:+|nuORF REV__ENST00000489928.1_1_14:23080555-23081103:+|nuORF MSMS UPN48_class_I_Rep_3 7 467.29547119140625 2 467.226885 932.439217 NaN NaN NaN NaN NaN NaN NaN 87.166 1 90.957 90.457 91.457 3.7905 0 0 0 0.40738 1 20678 20678 0.79363 0 1 + 45691 22623 28853 28866 52561 52561 -0.029704596823876273 TSQKFKGWL 9 Unmodified _TSQKFKGWL_ 0 0 0 L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|161|3|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|161|3|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|161|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 547.3004760742188 2 547.803291 1093.59203 0.50807 0.00027832 -0.21723 -0.000119 0.29084 0.00015932 547.8018296519372 83.109 0.11391 86.52 86.446 86.56 3.4116 14 12 2 0 0 0 0.12444 1 20704 20704 2.0598 0 1 49893 45692 8560 28854 28867 52562 52562 0.04897735714234841 TSQKFKGWL 9 Unmodified _TSQKFKGWL_ 0 0 0 L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|161|3|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|161|3|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|161|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 547.803291 1093.59203 0.46823 0.0002565 -1.3018 -0.00071314 -0.83358 -0.00045664 547.8026942830522 83.431 0.022903 86.781 86.765 86.788 3.35 0.13023 -0.00019397 NaN 2.0598 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 22730 45693 8560 28854 28867 0.04897735714234841 TSQLFKRGS 9 Unmodified _TSQLFKRGS_ 0 0 0 REV__L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|114|2|sense REV__L1PA8_dup4188|chr8:98500371-98506518:-|1.9113259044388988|0.0769576827353156|4.63|151.0|114|2|sense MSMS UPN48_class_I_Rep_3 7 512.2816162109375 2 512.282723 1022.55089 NaN NaN NaN NaN NaN NaN NaN 102.82 1 106.59 106.09 107.09 3.776 0 0 0 0.37891 1 24295 24295 5.7319 0 1 + 45694 29707 28855 28868 52563 52563 0.0405197467475773 TSQRSKINR 9 Unmodified _TSQRSKINR_ 0 0 0 REV__L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|44|3|sense REV__L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|44|3|sense MSMS UPN48_class_I_Rep_3 7 545.3073120117188 2 545.309803 1088.60505 NaN NaN NaN NaN NaN NaN NaN 39.954 1 43.605 43.105 44.105 3.6509 0 0 0 0.39598 1 7046 7046 1.6526 0 1 + 45695 28625 28856 28869 52564 52564 0.06429566826318478 TSQVLVHIY 9 Unmodified _TSQVLVHIY_ 0 0 0 HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|65|3|anti-sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|65|3|anti-sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 530.296875 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 56.851 1 60.152 59.652 60.652 3.3009 0 0 0 0.381 1 13047 13047 5.2307 0 1 45696 8304 28857 28870 52565 52565 0.049100294773325004 TSQYNRKKS 9 Unmodified _TSQYNRKKS_ 0 0 0 REV__L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|27|3|sense REV__L1MA4_dup6992|chr10:133405268-133406316:-|6.892296562839273|0.266583427579558|4.69|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 556.2958374023438 2 556.296362 1110.57817 NaN NaN NaN NaN NaN NaN NaN 105.67 1 105.67 105.17 106.17 0 0 0 0 0.40098 1 25779 25779 0.45834 0 1 + 45697 25206 28858 28871 52566 52566 0.027304582151373324 TSRAARLTAI 10 Unmodified _TSRAARLTAI_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-SECPEP UPN47_class_I_Rep_3 4 530.2517700195312 2 530.317097 1058.61964 -0.47605 -0.00025246 -0.070182 -3.7219E-05 -0.54624 -0.00028968 530.3170547826345 14.784 0.16608 18.153 18.087 18.253 3.3697 31 19 2 0 0 0 0.84575 1 615 615 0 0 1 22081 + 45698 17743 28859 28872 52567 52567 0.09267638974438341 TSRGRHKA 8 Unmodified _TSRGRHKA_ 0 0 0 ENSG00000186440|ENST00000641540|OR6P1 ENSG00000186440|ENST00000641540|OR6P1 ENSG00000186440|ENST00000641540|OR6P1 MSMS UPN47_class_I_Rep_1 2 456.7947692871094 2 456.759749 911.504946 NaN NaN NaN NaN NaN NaN NaN 119.71 1 123.31 122.81 123.81 3.6036 0 0 0 0.40798 1 29757 29757 0 0 1 45699 5155 28860 28873 52568 52568 0.04565374283163237 TSRGRRTA 8 Unmodified _TSRGRRTA_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense;L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|305|2|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.8692321777344 2 452.757207 903.499861 -0.52718 -0.00023868 -0.58586 -0.00026525 -1.113 -0.00050393 452.75695307644594 24.433 0.052002 27.898 27.856 27.908 3.4655 5 4 2 0 0 0 0.82752 1 3235 3235 0 0 1 10956 45700 14447 28861 28874 52569 52569 0.04425070420541033 TSRGRRTA 8 Unmodified _TSRGRRTA_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense;L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|305|2|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense MSMS UPN48_class_I_Rep_1 5 452.75677490234375 2 452.757207 903.499861 NaN NaN NaN NaN NaN NaN NaN 18.56 1 22.091 21.591 22.591 3.5313 0 0 0 0.40798 1 1270 1270 0 0 1 45701 14447 28861 28874 52570 52570 0.04425070420541033 TSRGRRTA 8 Unmodified _TSRGRRTA_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense;L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|305|2|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense MSMS UPN48_class_I_Rep_2 6 452.7567443847656 2 452.757207 903.499861 NaN NaN NaN NaN NaN NaN NaN 17.338 1 20.99 20.49 21.49 3.6518 0 0 0 0.40798 1 995 995 0 0 1 45702 14447 28861 28874 52571 52571 0.04425070420541033 TSRGRRTA 8 Unmodified _TSRGRRTA_ 0 0 0 L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense;L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|305|2|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|233|1|anti-sense MSMS UPN48_class_I_Rep_3 7 452.75628662109375 2 452.757207 903.499861 NaN NaN NaN NaN NaN NaN NaN 17.246 1 20.81 20.31 21.31 3.5637 0 0 0 0.40798 1 952 952 0 0 1 45703 14447 28861 28874 52572 52572 0.04425070420541033 TSRKLARA 8 Unmodified _TSRKLARA_ 0 0 0 REV__L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|84|2|sense REV__L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|84|2|sense MSMS UPN48_class_I_Rep_2 6 451.77984619140625 2 451.780151 901.545748 NaN NaN NaN NaN NaN NaN NaN 77.602 1 81.225 80.725 81.725 3.6222 0 0 0 0.40746 1 18376 18376 0.69038 0 1 + 45704 30256 28862 28875 52573 52573 0.09103715602782358 TSRKLARA 8 Unmodified _TSRKLARA_ 0 0 0 REV__L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|84|2|sense REV__L1PA8A_dup1195|chr7:90879787-90886047:+|1.2711348617391656|0.0481037311340021|4.72|151.0|84|2|sense MSMS UPN48_class_I_Rep_3 7 451.780029296875 2 451.780151 901.545748 NaN NaN NaN NaN NaN NaN NaN 77.858 1 81.46 80.96 81.96 3.6016 0 0 0 0.40746 1 18414 18414 0.69038 0 1 + 45705 30256 28862 28875 52574 52574 0.09103715602782358 TSRLENFRN 9 Unmodified _TSRLENFRN_ 0 0 0 L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|15|2|sense L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|15|2|sense L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 568.7950439453125 2 568.793986 1135.57342 NaN NaN NaN NaN NaN NaN NaN 67.551 1 70.815 70.315 71.315 3.2636 0 0 0 0.39428 1 16299 16299 2.0598 0.21551 1 45706 12335 28863 28876 52575 52575 0.0110557407235774 TSRQPLVDLP 10 Unmodified _TSRQPLVDLP_ 0 0 0 REV__L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|294|2|anti-sense REV__L1PA3_dup2544|chr4:53404015-53410141:-|3.6141418572830175|0.1633451619506208|4.47|151.0|294|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.3167114257812 2 563.316763 1124.61897 -0.061059 -3.4396E-05 0.094738 5.3367E-05 0.033679 1.8972E-05 563.3167922811264 38.22 0.38059 41.461 41.357 41.738 3.2414 41 26 2 0 0 0 0.55448 1 7415 7415 4.897 0.70751 1 54532 + 45707 29525 28864 28877 52576 52576 0.06164799534758458 TSRRESHK 8 Unmodified _TSRRESHK_ 0 0 0 HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|78|2|sense;HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|101|2|sense HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|78|2|sense HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|78|2|sense MSMS UPN48_class_I_Rep_2 6 500.75628662109375 2 500.767771 999.52099 NaN NaN NaN NaN NaN NaN NaN 24.034 1 27.673 27.173 28.173 3.6397 0 0 0 0.40625 1 2724 2724 2.3027 0 1 45708 8113 28865 28878 52577 52577 0.021210357294194182 TSRRKEIIRL 10 Unmodified _TSRRKEIIRL_ 0 0 0 L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|60|3|sense L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|60|3|sense L1MB3_dup13332|chr14:102401935-102403909:+|1.54259016586973|0.0511138922787322|4.92|151.0|60|3|sense MSMS UPN47_class_I_Rep_3 4 636.399658203125 2 636.398953 1270.78335 NaN NaN NaN NaN NaN NaN NaN 93.609 1 97.014 96.514 97.514 3.4052 0 0 0 0.53105 1 23328 23328 0.40072 0 1 45709 10341 28866 28879 52578 52578 0.1587923674535432 TSRRLDPI 8 Unmodified _TSRRLDPI_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MULTI-MSMS UPN47_class_I_Rep_2 3 479.27716064453125 2 479.277441 956.540328 0.15995 7.6661E-05 -0.16543 -7.9285E-05 -0.0054741 -2.6236E-06 479.27718248249784 73.358 0.96014 76.662 76.035 76.995 3.3048 133 79 3 0 0 0 0.82752 1 18009 18009 0.69038 0 1 133580 45710 2820 28867 28880 52579 52579 0.06031992020314192 TSRRLDPI 8 Unmodified _TSRRLDPI_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MSMS UPN48_class_I_Rep_1 5 479.2773742675781 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 76.843 1 80.353 79.853 80.853 3.5102 0 0 0 0.40746 1 18262 18262 0.69038 0 1 45711 2820 28867 28880 52580 52580 0.06031992020314192 TSRRLDPI 8 Unmodified _TSRRLDPI_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 479.277441 956.540328 0.085378 4.092E-05 -0.096535 -4.6267E-05 -0.011157 -5.3472E-06 479.2772347148256 73.392 1.2714 76.628 75.901 77.172 3.2363 0.0017409 0.00014269 NaN 0.69038 181 115 2 NaN NaN NaN NaN 0 NaN NaN 0 129820 45712 2820 28867 28880 0.06031992020314192 TSSDRSTSASQ 11 Unmodified _TSSDRSTSASQ_ 0 0 0 AluSp_dup16388|chr6:15282629-15282900:-|1.4009289255155326|0.0056241325366266|7.96|151.0|15|1|anti-sense AluSp_dup16388|chr6:15282629-15282900:-|1.4009289255155326|0.0056241325366266|7.96|151.0|15|1|anti-sense AluSp_dup16388|chr6:15282629-15282900:-|1.4009289255155326|0.0056241325366266|7.96|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 563.3076171875 2 563.752181 1125.48981 NaN NaN NaN NaN NaN NaN NaN 28.528 1 32.294 31.794 32.794 3.7662 0 0 0 0.38417 1 4407 4407 0 0 1 45713 227 28868 28881 52581 52581 -0.06791626886001723 TSSGHPLI 8 Unmodified _TSSGHPLI_ 0 0 0 MER1A_dup916|chr5:76687521-76688006:+|1.1087842912462524|0.0275212132347987|5.33|151.0|8|2|sense MER1A_dup916|chr5:76687521-76688006:+|1.1087842912462524|0.0275212132347987|5.33|151.0|8|2|sense MER1A_dup916|chr5:76687521-76688006:+|1.1087842912462524|0.0275212132347987|5.33|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 406.2203674316406 2 406.21906 810.423567 NaN NaN NaN NaN NaN NaN NaN 66.069 1 66.069 65.569 66.569 0 0 0 0 0.40738 1 14970 14970 0.79363 0 1 45714 15809 28869 28882 52582 52582 0.010772538005767274 TSSHKSFPK 9 Unmodified _TSSHKSFPK_ 0 0 0 nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6 nc|ENSG00000163645|Q7L0X2-2|ERICH6 nc|ENSG00000163645|Q7L0X2-2|ERICH6 MSMS UPN47_class_I_Rep_1 2 509.7702941894531 2 509.769448 1017.52434 NaN NaN NaN NaN NaN NaN NaN 13.122 1 16.579 16.079 17.079 3.457 0 0 0 0.39428 1 250 250 2.0598 1.2661 1 45715 4028 28870 28883 52583 52583 0.01628285783431238 TSSIKAFLFLH 11 Unmodified _TSSIKAFLFLH_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|232|2|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|232|2|anti-sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|232|2|anti-sense MSMS UPN48_class_I_Rep_2 6 632.356689453125 2 632.358431 1262.70231 NaN NaN NaN NaN NaN NaN NaN 71.346 1 74.897 74.397 75.397 3.5505 0 0 0 0.38417 1 16640 16640 2.7352 0.23671 1 45716 13696 28871 28884 52584 52584 0.08146535982587011 TSSLAQPGAYY 11 Unmodified _TSSLAQPGAYY_ 0 0 0 ENSG00000159387|ENST00000290552|IRX6 ENSG00000159387|ENST00000290552|IRX6 ENSG00000159387|ENST00000290552|IRX6 MULTI-MSMS UPN47_class_I_Rep_2 3 579.2770385742188 2 579.277303 1156.54005 0.51966 0.00030103 -0.29953 -0.00017351 0.22013 0.00012752 579.2771326890671 58.389 0.74963 61.671 61.377 62.127 3.2818 78 43 3 0 0 0 0.57992 1 13618 13618 5.7319 0 1 242390 45717 3834 28872 28885 52585 52585 -0.03195472490187967 TSSLLITLPP 10 Unmodified _TSSLLITLPP_ 0 0 0 ENST00000533623.1_1_11:123988218-123988639:+|nuORF ENST00000533623.1_1_11:123988218-123988639:+|nuORF ENST00000533623.1_1_11:123988218-123988639:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 521.9913940429688 2 521.313158 1040.61176 0.36188 0.00018865 -0.16795 -8.7555E-05 0.19393 0.0001011 521.3131043593221 85.71 0.54837 89.082 88.688 89.236 3.3716 197 71 4 0 0 0 0.84575 1 21513 21513 9.3831 1.2276 1 918830 45718 7312 28873 28886 52586 52586 0.09308066934318049 TSSLLITLPP 10 Unmodified _TSSLLITLPP_ 0 0 0 ENST00000533623.1_1_11:123988218-123988639:+|nuORF ENST00000533623.1_1_11:123988218-123988639:+|nuORF ENST00000533623.1_1_11:123988218-123988639:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 521.313158 1040.61176 0.36195 0.00018869 -0.16931 -8.8262E-05 0.19264 0.00010043 521.3131109208356 85.276 0.35683 88.867 88.764 89.121 3.5914 -0.089638 -3.2262E-05 NaN 9.3831 74 49 2 NaN NaN NaN NaN 0 NaN NaN 0 179210 45719 7312 28873 28886 0.09308066934318049 TSSLLITLPP 10 Unmodified _TSSLLITLPP_ 0 0 0 ENST00000533623.1_1_11:123988218-123988639:+|nuORF ENST00000533623.1_1_11:123988218-123988639:+|nuORF ENST00000533623.1_1_11:123988218-123988639:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 521.313158 1040.61176 0.15156 7.9009E-05 0.040744 2.124E-05 0.1923 0.00010025 521.3133564069299 85.489 0.57552 88.922 88.659 89.235 3.4329 -0.035178 0.00018674 NaN 9.3831 106 76 2 NaN NaN NaN NaN 0 NaN NaN 0 221590 45720 7312 28873 28886 0.09308066934318049 TSSLLPPLAA 10 Unmodified _TSSLLPPLAA_ 0 0 0 ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF ENST00000225777.7_1_17:76168333-76168627:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 484.8159484863281 2 485.2844 968.554247 0.23245 0.00011281 -1.9324 -0.00093777 -1.6999 -0.00082496 485.28373876896717 62.215 0.17398 65.474 65.404 65.578 3.2594 17 13 2 0 0 0 0.84575 1 14672 14672 6.7232 0 1 44288 45721 5877 28874 28887 52587 52587 0.06871224728752168 TSSLSRSKTK 10 Unmodified _TSSLSRSKTK_ 0 0 0 ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-1|ZMYM5;nc|ENSG00000132950|Q9UJ78-2|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 MSMS UPN46_class_I_Rep_3 1 547.8125610351562 2 547.811845 1093.60914 NaN NaN NaN NaN NaN NaN NaN 12.651 1 12.651 12.151 13.151 0 0 0 0 0.53105 1 167 167 0 0 1 45722 2783 28875 28888 52588 52588 0.06607611529352653 TSSLSRSKTK 10 Unmodified _TSSLSRSKTK_ 0 0 0 ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-1|ZMYM5;nc|ENSG00000132950|Q9UJ78-2|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 MSMS UPN46_class_I_Rep_3 1 547.8106079101562 2 547.811845 1093.60914 NaN NaN NaN NaN NaN NaN NaN 12.698 1 12.698 12.198 13.198 0 0 0 0 0.53105 1 180 180 0 0 1 45723 2783 28875 28888 52589 52589 0.06607611529352653 TSSLSRSKTK 10 Unmodified _TSSLSRSKTK_ 0 0 0 ENSG00000132950|ENST00000337963|ZMYM5;nc|ENSG00000132950|Q9UJ78-1|ZMYM5;nc|ENSG00000132950|Q9UJ78-2|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 ENSG00000132950|ENST00000337963|ZMYM5 MSMS UPN47_class_I_Rep_2 3 547.8272094726562 2 547.811845 1093.60914 NaN NaN NaN NaN NaN NaN NaN 17.947 1 21.334 20.834 21.834 3.387 0 0 0 0.53105 1 1434 1434 0 0 1 45724 2783 28875 28888 52590 52590 0.06607611529352653 TSSPDFFITY 10 Unmodified _TSSPDFFITY_ 0 0 0 HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.274169921875 2 589.274229 1176.53391 0.36577 0.00021554 -0.02524 -1.4873E-05 0.34053 0.00020067 589.2739778714516 70.91 0.75927 74.282 73.949 74.708 3.3713 175 67 3 0 0 0 0.31818 2 17269 17228;17269 27.629 6.289 1 499740 45725 8352 28876 28889 52591;52592 52592 -0.04729990721716604 TSSPDFFITY 10 Unmodified _TSSPDFFITY_ 0 0 0 HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.2743530273438 2 589.274229 1176.53391 0.41863 0.00024669 -0.12812 -7.55E-05 0.2905 0.00017119 589.2739822233071 71.161 0.92187 74.451 74.114 75.036 3.2899 195 82 3 0 0 0 0.41718 2 17359 17359;17397 18.146 4.0704 1 518370 45726 8352 28876 28889 52593;52594 52593 -0.04729990721716604 TSSPDFFITY 10 Unmodified _TSSPDFFITY_ 0 0 0 HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense HERVL-int_dup1843|chr12:46727631-46731599:-|1.718166340236539|0.055035776771672|4.96|151.0|231|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.2744750976562 2 589.274229 1176.53391 0.45116 0.00026586 -0.14202 -8.3689E-05 0.30914 0.00018217 589.274040192725 71.145 0.88976 74.357 74.047 74.936 3.2113 136 75 2 0 0 0 0.3776 2 17470 17416;17470 21.537 21.537 1 476230 45727 8352 28876 28889 52595;52596 52596 -0.04729990721716604 TSSPNISAAFW 11 Unmodified _TSSPNISAAFW_ 0 0 0 REV__L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|90|3|anti-sense REV__L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|90|3|anti-sense MSMS UPN48_class_I_Rep_1 5 590.7862548828125 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.574 1 48.087 47.587 48.587 3.5132 0 0 0 0.38417 1 8500 8500 3.8763 0.88109 1 + 45728 29975 28877 28890 52597 52597 -0.026557662532923132 TSSRIFFL 8 Unmodified _TSSRIFFL_ 0 0 0 L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|40|2|anti-sense L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|40|2|anti-sense L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|40|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.75433349609375 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 22.717 1 26.278 25.778 26.778 3.5605 0 0 0 0.40738 1 2257 2257 0.79363 0 1 45729 12244 28878 28891 52598 52598 0.042383752771456784 TSSSHTLTY 9 Unmodified _TSSSHTLTY_ 0 0 0 nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-4|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN MULTI-MSMS UPN47_class_I_Rep_1 2 498.7353820800781 2 498.735271 995.45599 -0.29196 -0.00014561 0.58879 0.00029365 0.29684 0.00014804 498.7354371618093 24.974 0.51663 28.724 28.463 28.979 3.7495 65 44 2 0 0 0 0.26948 2 3365 3365;3398 15.847 15.847 1 89470 45730 3736 28879 28892 52599;52600 52599 -0.041920035870930406 TSSSHTLTY 9 Unmodified _TSSSHTLTY_ 0 0 0 nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-4|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN MSMS UPN47_class_I_Rep_1 2 498.7353820800781 2 498.735271 995.45599 NaN NaN NaN NaN NaN NaN NaN 24.875 1 28.625 28.125 29.125 3.7495 0 0 0 0.089203 1 3326 3326 26.884 0.54238 1 45731 3736 28879 28892 52601 52601 -0.041920035870930406 TSSSHTLTY 9 Unmodified _TSSSHTLTY_ 0 0 0 nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-4|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN MULTI-MSMS UPN47_class_I_Rep_2 3 498.7352600097656 2 498.735271 995.45599 -0.16464 -8.2112E-05 0.31712 0.00015816 0.15248 7.6049E-05 498.7353054117631 25.123 0.75593 28.606 28.288 29.044 3.483 111 68 2 0 0 0 0.13631 4 3417 3380;3417;3485;3521 26.884 15.847 1 101740 45732 3736 28879 28892 52602;52603;52604;52605 52603 -0.041920035870930406 TSSSHTLTY 9 Unmodified _TSSSHTLTY_ 0 0 0 nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-4|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN nc|ENSG00000156642|Q9Y639-3|NPTN MULTI-MSMS UPN47_class_I_Rep_3 4 498.7360534667969 2 498.735271 995.45599 -0.47262 -0.00023571 0.64514 0.00032175 0.17252 8.6042E-05 498.7355365726853 25.221 0.71316 28.572 28.331 29.044 3.3509 94 58 2 0 0 0 0.13631 5 3503 3461;3503;3541;3581;3616 26.884 15.847 1 108980 45733 3736 28879 28892 52606;52607;52608;52609;52610 52607 -0.041920035870930406 TSSVYLCILI 10 Unmodified _TSSVYLCILI_ 0 0 0 L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|127|2|anti-sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|127|2|anti-sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|127|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.3064575195312 2 556.307018 1110.59948 0.42728 0.0002377 -0.34068 -0.00018953 0.086594 4.8173E-05 556.306744913886 63.848 0.78949 67.022 66.771 67.56 3.1741 123 61 3 0 0 0 0.54466 2 15331 15331;15369 6.2058 0 1 176370 45734 12160 28880 28893 52611;52612 52611 0.048607071996229934 TSTIPSLILF 10 Unmodified _TSTIPSLILF_ 0 0 0 L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|257|3|anti-sense L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|257|3|anti-sense L1MC1_dup3628|chr4:109666742-109670435:-|2.2846068823630024|0.2763230075781947|3.05|151.0|257|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.321533203125 2 546.320983 1090.62741 0.48183 0.00026323 0.11052 6.038E-05 0.59235 0.00032361 546.3210903797362 79.817 0.24242 83.461 83.264 83.506 3.6446 47 30 2 0 0 0 0.30285 1 18952 18952 32.305 0 1 230860 45735 11140 28881 28894 52613 52613 0.08572353451381787 TSTVLVETVT 10 Unmodified _TSTVLVETVT_ 0 0 0 nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC nc|ENSG00000128591|Q14315-2|FLNC nc|ENSG00000128591|Q14315-2|FLNC MSMS UPN47_class_I_Rep_3 4 525.3037719726562 2 525.289879 1048.56521 NaN NaN NaN NaN NaN NaN NaN 61.337 1 64.502 64.002 65.002 3.1651 0 0 0 0.53105 1 14462 14462 3.2813 0 1 45736 2595 28882 28895 52614 52614 0.04286582312374776 TSTYLSNSYL 10 Unmodified _TSTYLSNSYL_ 0 0 0 ENST00000371086.3_1_1:64014755-64014992:+|nuORF ENST00000371086.3_1_1:64014755-64014992:+|nuORF ENST00000371086.3_1_1:64014755-64014992:+|nuORF MSMS UPN48_class_I_Rep_1 5 574.7769165039062 2 574.777136 1147.53972 NaN NaN NaN NaN NaN NaN NaN 68.262 1 71.714 71.214 72.214 3.4517 0 0 0 0.53105 1 15752 15752 1.4819 0 1 45737 6387 28883 28896 52615 52615 -0.02814892210039943 TSVAIGVLLL 10 Unmodified _TSVAIGVLLL_ 0 0 0 REV__ENSG00000105605|ENST00000391767|CACNG7 REV__ENSG00000105605|ENST00000391767|CACNG7 MULTI-MSMS UPN48_class_I_Rep_2 6 493.3182678222656 2 493.318243 984.621933 0.26966 0.00013303 0.0072945 3.5985E-06 0.27696 0.00013663 493.31816554953997 69.548 1.0931 73.069 72.684 73.777 3.5216 230 93 4 0 0 0 0.51565 1 16015 16015 10.074 0 1 1458100 + 45738 18296 28884 28897 52616 52616 0.12900674659567812 TSVIRNLT 8 Unmodified _TSVIRNLT_ 0 0 0 L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|34|2|sense L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|34|2|sense L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 451.93243408203125 2 452.266542 902.51853 NaN NaN NaN NaN NaN NaN NaN 92.055 1 95.933 95.433 96.433 3.8782 0 0 0 0.40625 1 21831 21831 2.3027 0 1 45739 10850 28885 28898 52617 52617 0.06337187271731182 TSVSTQAKRNG 11 Unmodified _TSVSTQAKRNG_ 0 0 0 L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|124|3|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|124|3|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|124|3|sense MSMS UPN47_class_I_Rep_2 3 574.8032836914062 2 574.804551 1147.59455 NaN NaN NaN NaN NaN NaN NaN 76.943 1 80.275 79.775 80.775 3.3315 0 0 0 0.38417 1 19063 19063 1.0715 0.27783 1 45740 13869 28886 28899 52618 52618 0.02665539381223425 TSVTSSWAHL 10 Unmodified _TSVTSSWAHL_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|37|2|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|37|2|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|37|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.7728881835938 2 544.772188 1087.52982 -0.060378 -3.2893E-05 -0.13529 -7.3705E-05 -0.19567 -0.0001066 544.77204004624 18.604 1.5803 22.185 21.586 23.167 3.5806 427 188 3 0 0 0 0.56078 1 1768 1768 3.2813 0.28607 1 316900 45741 8396 28887 28900 52619 52619 -0.010440354247748473 TSVWHGDIKKI 11 Unmodified _TSVWHGDIKKI_ 0 0 0 nc|ENSG00000185880|Q86WT6-4|TRIM69;nc|ENSG00000185880|Q86WT6-3|TRIM69;nc|ENSG00000185880|Q86WT6-2|TRIM69;ENSG00000185880|ENST00000329464|TRIM69 nc|ENSG00000185880|Q86WT6-4|TRIM69 nc|ENSG00000185880|Q86WT6-4|TRIM69 MSMS UPN47_class_I_Rep_2 3 642.3615112304688 2 642.358962 1282.70337 NaN NaN NaN NaN NaN NaN NaN 106.29 1 109.82 109.32 110.32 3.5345 0 0 0 0.38417 1 25750 25750 2.9952 1.151 1 45742 5123 28888 28901 52620 52620 0.07332750351497452 TSVWHGDIKKI 11 Unmodified _TSVWHGDIKKI_ 0 0 0 nc|ENSG00000185880|Q86WT6-4|TRIM69;nc|ENSG00000185880|Q86WT6-3|TRIM69;nc|ENSG00000185880|Q86WT6-2|TRIM69;ENSG00000185880|ENST00000329464|TRIM69 nc|ENSG00000185880|Q86WT6-4|TRIM69 nc|ENSG00000185880|Q86WT6-4|TRIM69 MSMS UPN48_class_I_Rep_1 5 642.3614501953125 2 642.358962 1282.70337 NaN NaN NaN NaN NaN NaN NaN 106.21 1 109.84 109.34 110.34 3.6277 0 0 0 0.38417 1 25596 25596 2.9952 1.151 1 45743 5123 28888 28901 52621 52621 0.07332750351497452 TSVYSGFCCHC 11 Unmodified _TSVYSGFCCHC_ 0 0 0 L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|187|1|anti-sense L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|187|1|anti-sense L1PA4_dup1938|chr3:41558877-41564433:-|2.050535699800018|0.0767344974675378|4.74|151.0|187|1|anti-sense MSMS UPN48_class_I_Rep_1 5 603.7205810546875 2 603.722469 1205.43039 NaN NaN NaN NaN NaN NaN NaN 112.91 1 116.54 116.04 117.04 3.6314 0 0 0 0.38417 1 27416 27416 1.3295 0 1 45744 14332 28889 28902 52622 52622 -0.1641126069700931 TSWTTSFY 8 Unmodified _TSWTTSFY_ 0 0 0 ENST00000456943.6_1_6:2272473-2272845:+|nuORF ENST00000456943.6_1_6:2272473-2272845:+|nuORF ENST00000456943.6_1_6:2272473-2272845:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.7121887207031 2 496.721633 991.428712 0.10847 5.3878E-05 0.52526 0.00026091 0.63373 0.00031479 496.7216705377127 54.438 0.28839 57.94 57.736 58.025 3.5014 17 12 2 0 0 0 0.82752 1 12247 12247 9.3474 0 1 27292 45745 6832 28890 28903 52623 52623 -0.0673448712748268 TSWYTIDPFI 10 Unmodified _TSWYTIDPFI_ 0 0 0 ENST00000409600.5_1_2:201688026-201688140:+|nuORF ENST00000409600.5_1_2:201688026-201688140:+|nuORF ENST00000409600.5_1_2:201688026-201688140:+|nuORF MSMS UPN47_class_I_Rep_2 3 621.8035278320312 2 621.805697 1241.59684 NaN NaN NaN NaN NaN NaN NaN 55.124 1 58.434 57.934 58.934 3.3102 0 0 0 0.53105 1 12516 12516 3.2813 0 1 45746 6623 28891 28904 52624 52624 -0.014294249336671783 TSYADGYSPPL 11 Unmodified _TSYADGYSPPL_ 0 0 0 ENST00000565945.1_1_16:28602037-28603024:+|nuORF;ENSG00000176476|ENST00000317058|SGF29 ENST00000565945.1_1_16:28602037-28603024:+|nuORF ENST00000565945.1_1_16:28602037-28603024:+|nuORF MSMS UPN47_class_I_Rep_1 2 585.7691040039062 2 585.769311 1169.52407 NaN NaN NaN NaN NaN NaN NaN 53.595 1 57.123 56.623 57.623 3.5278 0 0 0 0.38417 1 12021 12021 3.2813 0.28607 1 45747 4763 28892 28905 52625 52625 -0.05391178727086299 TSYAQKFQG 9 Unmodified _TSYAQKFQG_ 0 0 0 nc|ENSG00000211962|P01743|IGHV1-46 nc|ENSG00000211962|P01743|IGHV1-46 nc|ENSG00000211962|P01743|IGHV1-46 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2536010742188 2 515.253631 1028.49271 0.25524 0.00013151 0.1876 9.6661E-05 0.44284 0.00022818 515.2536604630409 47.916 0.41592 51.55 51.346 51.761 3.6339 39 27 2 0 0 0 0.35081 1 9415 9415 10.824 2.6684 1 75538 45748 16822 28893 28906 52626 52626 -0.020397069705268223 TSYGGELRF 9 Unmodified _TSYGGELRF_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_1 5 515.253662109375 2 515.253631 1028.49271 0.2363 0.00012176 -0.023418 -1.2066E-05 0.21289 0.00010969 515.2536235760322 47.907 0.40958 51.429 51.31 51.72 3.5219 35 26 2 0 0 0 0.26468 1 9527 9527 16.149 1.3108 1 130590 45749 3266 28894 28907 52627 52627 -0.020397069705268223 TSYGGELRF 9 Unmodified _TSYGGELRF_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_2 6 515.253662109375 2 515.253631 1028.49271 0.24014 0.00012374 0.14439 7.4399E-05 0.38454 0.00019813 515.253716330199 47.63 0.45403 51.366 51.23 51.684 3.7361 38 30 2 0 0 0 0.279 1 9469 9469 15.248 3.7538 1 136710 45750 3266 28894 28907 52628 52628 -0.020397069705268223 TSYGGELRF 9 Unmodified _TSYGGELRF_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS UPN48_class_I_Rep_3 7 515.2540893554688 2 515.253631 1028.49271 0.25524 0.00013151 0.1876 9.6661E-05 0.44284 0.00022818 515.2536604630409 47.916 0.41592 51.55 51.346 51.761 3.6339 39 27 2 0 0 0 0.39745 1 9472 9472 8.1555 4.2111 1 75538 45751 3266 28894 28907 52629 52629 -0.020397069705268223 TSYREKAWKLL 11 Unmodified _TSYREKAWKLL_ 0 0 0 PABL_A_dup223|chr8:129934485-129935129:+|2.1348359222413653|0.0075880024966949|8.14|151.0|42|2|anti-sense PABL_A_dup223|chr8:129934485-129935129:+|2.1348359222413653|0.0075880024966949|8.14|151.0|42|2|anti-sense PABL_A_dup223|chr8:129934485-129935129:+|2.1348359222413653|0.0075880024966949|8.14|151.0|42|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 465.9322509765625 3 465.597871 1393.77178 0.285 0.0001327 -0.38229 -0.00017799 -0.097286 -4.5296E-05 465.59765461011256 54.148 0.46672 57.73 57.537 58.004 3.5817 41 27 2 0 0 0 22.551 1 11494 11494 0.40827 0 1 144160 45752 16874 28895 28908 52630 52630 0.09064994931372894 TSYWKLLAL 9 Unmodified _TSYWKLLAL_ 0 0 0 REV__ENSG00000059377|ENST00000448866|TBXAS1 REV__ENSG00000059377|ENST00000448866|TBXAS1 MSMS UPN48_class_I_Rep_2 6 547.8158569335938 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 119.31 1 122.98 122.48 123.48 3.6652 0 0 0 0.4007 1 28632 28632 0.52476 0 1 + 45753 17717 28896 28909 52631 52631 0.07411790516812289 TSYYSLRQY 9 Unmodified _TSYYSLRQY_ 0 0 0 nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 MSMS UPN48_class_I_Rep_1 5 590.7853393554688 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.435 1 47.949 47.449 48.449 3.5132 0 0 0 0.3377 1 8458 8458 8.7454 1.1365 1 45754 2255 28897 28910 52632 52632 -0.02655766253269576 TSYYSLRQY 9 Unmodified _TSYYSLRQY_ 0 0 0 nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 MULTI-MSMS UPN48_class_I_Rep_2 6 590.78515625 2 590.785296 1179.55604 0.4061 0.00023992 0.33983 0.00020077 0.74594 0.00044069 590.7855474242458 43.982 0.53917 47.743 47.499 48.038 3.7617 60 40 2 0 0 0 0.47763 1 8385 8385 2.9952 0.49676 1 111020 45755 2255 28897 28910 52633 52633 -0.02655766253269576 TSYYSLRQY 9 Unmodified _TSYYSLRQY_ 0 0 0 nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 MSMS UPN48_class_I_Rep_3 7 590.7835083007812 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 44.023 1 47.661 47.161 48.161 3.6385 0 0 0 0.39036 1 8264 8264 2.9952 0.49676 1 45756 2255 28897 28910 52634 52634 -0.02655766253269576 TTAFSFVDLL 10 Unmodified _TTAFSFVDLL_ 0 0 0 L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|227|3|anti-sense L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|227|3|anti-sense L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|227|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.2950439453125 2 557.294965 1112.57538 0.38103 0.00021234 -0.16972 -9.4587E-05 0.2113 0.00011776 557.2948569747864 65.037 0.62267 68.292 68.028 68.65 3.2556 78 50 2 0 0 0 0.52083 1 15513 15513 9.3831 0.63772 1 95859 45757 12920 28898 28911 52635 52635 0.023591900376231933 TTAFSFVDLL 10 Unmodified _TTAFSFVDLL_ 0 0 0 L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|227|3|anti-sense L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|227|3|anti-sense L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|227|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.2951049804688 2 557.294965 1112.57538 0.43216 0.00024084 -0.21708 -0.00012098 0.21508 0.00011986 557.2947643843371 65.185 0.58189 68.365 67.997 68.579 3.1795 56 45 2 0 0 0 0.54822 1 15591 15591 5.7319 0.43497 1 111210 45758 12920 28898 28911 52636 52636 0.023591900376231933 TTAKVTIARE 10 Unmodified _TTAKVTIARE_ 0 0 0 REV__ENST00000415938.7_1_16:2152605-2162466:-|nuORF REV__ENST00000415938.7_1_16:2152605-2162466:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 545.31689453125 2 545.316763 1088.61897 0.46138 0.0002516 0.10883 5.9345E-05 0.57021 0.00031094 545.3165470352707 79.79 0.73904 83.255 82.664 83.403 3.465 159 81 3 0 0 0 0.56374 1 19828 19828 1.1933 0 1 238630 + 45759 22217 28899 28912 52637 52637 0.07820799534783873 TTAQEVLARAR 11 Unmodified _TTAQEVLARAR_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-SECPEP UPN48_class_I_Rep_2 6 405.93255615234375 3 405.898321 1214.67313 0.068453 2.7785E-05 -1.1665 -0.00047349 -1.0981 -0.0004457 406.23205413866015 34.076 0.52047 37.737 37.522 38.042 3.6607 96 55 3 0 0 0 22.551 1 5474 5474 7.0371 2.5082 1 92955 45760 4303 28900 28913 52638 52638 0.07438391686309842 TTAQEVLARAR 11 Unmodified _TTAQEVLARAR_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-SECPEP UPN48_class_I_Rep_3 7 405.93267822265625 3 405.898321 1214.67313 -8.784E-05 -3.5654E-08 -0.92964 -0.00037734 -0.92973 -0.00037737 405.89820978022505 34.114 0.56397 37.793 37.522 38.086 3.6797 94 63 2 0 0 0 22.551 1 5381 5381 4.4062 4.4062 1 93208 45761 4303 28900 28913 52639 52639 0.07438391686309842 TTAVDNGFLSP 11 Unmodified _TTAVDNGFLSP_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS UPN47_class_I_Rep_2 3 561.2770385742188 2 561.277303 1120.54005 0.17266 9.6909E-05 -0.17847 -0.00010017 -0.0058081 -3.26E-06 561.2770810547216 44.306 0.5509 47.661 47.377 47.927 3.3556 48 35 2 0 0 0 0.67398 1 9253 9253 1.0715 0.27783 1 110100 + 45762 21388 28901 28914 52640 52640 -0.015394724901852896 TTAWVIQTY 9 Unmodified _TTAWVIQTY_ 0 0 0 REV__ENST00000566431.5_1_16:84853723-84896622:+|nuORF REV__ENST00000566431.5_1_16:84853723-84896622:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 541.7816162109375 2 541.779482 1081.54441 0.40787 0.00022097 3.1477 0.0017054 3.5556 0.0019263 541.7809243686296 62.068 0.19555 65.328 65.226 65.422 3.2594 17 11 2 0 0 0 0.12462 1 14656 14656 1.8442 0.19162 1 96319 + 45763 18219 28902 28915 52641 52641 0.0069003672338112665 TTCKNDSIL 9 Unmodified _TTCKNDSIL_ 0 0 0 REV__L1MC2_dup2902|chr8:55926933-55927552:-|3.118882218424356|0.0269396067241859|6.86|151.0|16|2|sense REV__L1MC2_dup2902|chr8:55926933-55927552:-|3.118882218424356|0.0269396067241859|6.86|151.0|16|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.7467346191406 2 497.747324 993.480096 -0.15455 -7.6926E-05 -0.7226 -0.00035967 -0.87715 -0.0004366 497.7467935135654 13.051 0.15852 16.439 16.367 16.525 3.388 23 13 2 0 0 0 0.50088 1 223 223 0.52476 0 1 62209 + 45764 26651 28903 28916 52642 52642 -0.01690486425081872 TTCKNDSIL 9 Unmodified _TTCKNDSIL_ 0 0 0 REV__L1MC2_dup2902|chr8:55926933-55927552:-|3.118882218424356|0.0269396067241859|6.86|151.0|16|2|sense REV__L1MC2_dup2902|chr8:55926933-55927552:-|3.118882218424356|0.0269396067241859|6.86|151.0|16|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 497.747324 993.480096 -0.15455 -7.6926E-05 -0.7226 -0.00035967 -0.87715 -0.0004366 497.7467935135654 13.051 0.15852 16.439 16.367 16.525 3.388 0.024632 -0.00021169 NaN 0.52476 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 62209 + 45765 26651 28903 28916 -0.01690486425081872 TTDAMHDSF 9 Unmodified _TTDAMHDSF_ 0 0 0 REV__ENSG00000163788|ENST00000296088|SNRK REV__ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS UPN48_class_I_Rep_3 7 513.2083129882812 2 512.705657 1023.39676 0.1865 9.5621E-05 0.82178 0.00042133 1.0083 0.00051695 512.7060265061003 51.533 0.49776 55.144 54.802 55.299 3.6105 70 40 2 0 0 0 0.40174 1 10487 10487 7.9102 0 1 335670 + 45766 20004 28904 28917 52643 52643 -0.1140022287291913 TTDFIYQLY 9 Unmodified _TTDFIYQLY_ 0 0 0 nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP nc|ENSG00000067057|Q01813-2|PFKP nc|ENSG00000067057|Q01813-2|PFKP MULTI-MSMS UPN47_class_I_Rep_1 2 582.2847290039062 2 582.284597 1162.55464 0.39939 0.00023256 0.22945 0.00013361 0.62885 0.00036617 582.2845145287071 78.065 0.97888 81.494 81.098 82.077 3.4289 210 97 3 0 0 0 0.01718 7 19381 19333;19346;19381;19417;19451;19486;19505 65.235 32.93 1 453690 45767 1028 28905 28918 52644;52645;52646;52647;52648;52649;52650 52646 -0.02013400342048044 TTDFIYQLY 9 Unmodified _TTDFIYQLY_ 0 0 0 nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP nc|ENSG00000067057|Q01813-2|PFKP nc|ENSG00000067057|Q01813-2|PFKP MULTI-MSMS UPN47_class_I_Rep_2 3 582.2845458984375 2 582.284597 1162.55464 0.48498 0.00028239 0.10081 5.8702E-05 0.58579 0.0003411 582.2844105941085 78.284 0.85534 81.626 81.262 82.117 3.3428 229 94 3 0 0 0 0.01718 6 19392 19392;19422;19456;19493;19519;19526 65.235 32.93 1 531730 45768 1028 28905 28918 52651;52652;52653;52654;52655;52656 52651 -0.02013400342048044 TTDFIYQLY 9 Unmodified _TTDFIYQLY_ 0 0 0 nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP nc|ENSG00000067057|Q01813-2|PFKP nc|ENSG00000067057|Q01813-2|PFKP MULTI-MSMS UPN47_class_I_Rep_3 4 582.2847290039062 2 582.284597 1162.55464 0.46765 0.0002723 0.2336 0.00013602 0.70125 0.00040833 582.284472431379 78.306 0.98221 81.588 81.16 82.142 3.2816 254 105 3 0 0 0 0.01718 5 19575 19463;19499;19537;19575;19608 65.235 25.278 1 478270 45769 1028 28905 28918 52657;52658;52659;52660;52661 52660 -0.02013400342048044 TTDLFGRDLSY 11 Unmodified _TTDLFGRDLSY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_1 2 644.3154296875 2 644.314417 1286.61428 0.48794 0.00031439 -2.378 -0.0015322 -1.8901 -0.0012178 644.314313979662 60.772 0.46716 64.154 63.801 64.268 3.3815 82 44 3 0 0 0 0.16145 2 14151 14151;14190 44.945 31.039 1 144530 45770 4439 28906 28919 52662;52663 52662 -0.017561293986545934 TTDLFGRDLSY 11 Unmodified _TTDLFGRDLSY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MSMS UPN47_class_I_Rep_1 2 644.3142700195312 2 644.314417 1286.61428 NaN NaN NaN NaN NaN NaN NaN 60.864 1 64.246 63.746 64.746 3.3815 0 0 0 0.17439 1 14231 14231 18.721 10.811 1 45771 4439 28906 28919 52664 52664 -0.017561293986545934 TTDLFGRDLSY 11 Unmodified _TTDLFGRDLSY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_2 3 644.3165893554688 2 644.314417 1286.61428 0.47261 0.00030451 -1.4404 -0.00092809 -0.96781 -0.00062357 644.3140433354544 60.978 0.47285 64.244 64.001 64.474 3.2654 67 44 3 0 0 0 0.14152 3 14297 14294;14297;14333 55.467 36.105 1 192180 45772 4439 28906 28919 52665;52666;52667 52666 -0.017561293986545934 TTDLFGRDLSY 11 Unmodified _TTDLFGRDLSY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MSMS UPN47_class_I_Rep_2 3 644.3148193359375 2 644.314417 1286.61428 NaN NaN NaN NaN NaN NaN NaN 60.822 1 64.088 63.588 64.588 3.2654 0 0 0 0.096898 1 14257 14257 23.016 7.7672 1 45773 4439 28906 28919 52668 52668 -0.017561293986545934 TTDLFGRDLSY 11 Unmodified _TTDLFGRDLSY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS UPN47_class_I_Rep_3 4 644.3153686523438 2 644.314417 1286.61428 0.39064 0.00025169 -0.1234 -7.9507E-05 0.26724 0.00017219 644.3143630982896 61.093 0.50333 64.258 63.956 64.46 3.1651 69 47 2 0 0 0 0.15845 4 14361 14317;14353;14361;14402 48.073 36.578 1 183740 45774 4439 28906 28919 52669;52670;52671;52672 52671 -0.017561293986545934 TTDLLVSR 8 Unmodified _TTDLLVSR_ 0 0 0 ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENST00000581544.5_1_17:7477924-7481249:+|nuORF MSMS UPN46_class_I_Rep_3 1 452.75714111328125 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 28.108 1 28.108 27.608 28.608 0 0 0 0 0.40527 1 4270 4270 3.5965 0 1 45775 7543 28907 28920 52673 52673 0.04693481034871638 TTDLLVSR 8 Unmodified _TTDLLVSR_ 0 0 0 ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581621.1_1_17:7476159-7481249:+|nuORF ENST00000581544.5_1_17:7477924-7481249:+|nuORF ENST00000581544.5_1_17:7477924-7481249:+|nuORF MSMS UPN46_class_I_Rep_3 1 452.7571105957031 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 28.463 1 28.463 27.963 28.963 0 0 0 0 0.40659 1 4373 4373 1.8442 0 1 45776 7543 28907 28920 52674 52674 0.04693481034871638 TTDPNIRVGY 10 Unmodified _TTDPNIRVGY_ 0 0 0 nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF nc|ENSG00000019991|P14210-3|HGF nc|ENSG00000019991|P14210-3|HGF MULTI-MSMS UPN47_class_I_Rep_3 4 568.2901000976562 2 568.290745 1134.56694 -0.0053207 -3.0237E-06 0.10449 5.9379E-05 0.099166 5.6355E-05 568.2906625487803 40.717 0.53713 43.954 43.667 44.204 3.2372 51 34 2 0 0 0 0.56118 1 8127 8127 2.9952 1.5133 1 101390 45777 805 28908 28921 52675 52675 0.005036361210159157 TTDSSYGQNY 10 Unmodified _TTDSSYGQNY_ 0 0 0 nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 MULTI-MSMS UPN47_class_I_Rep_1 2 568.2297973632812 2 568.23055 1134.44655 -0.075808 -4.3076E-05 0.14696 8.3506E-05 0.07115 4.0429E-05 568.2306197168243 29.608 0.46182 33.366 33.15 33.612 3.7578 45 34 2 0 0 0 0.37703 3 4722 4722;4759;4773 21.59 21.59 1 59472 45778 5809 28909 28922 52676;52677;52678 52676 -0.11529816663278325 TTDSSYGQNY 10 Unmodified _TTDSSYGQNY_ 0 0 0 nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 MULTI-MSMS UPN47_class_I_Rep_2 3 568.231201171875 2 568.23055 1134.44655 0.046436 2.6386E-05 0.10703 6.0818E-05 0.15347 8.7204E-05 568.2304719985837 29.695 0.52718 33.187 32.992 33.519 3.4923 62 43 2 0 0 0 0.40112 3 4818 4775;4789;4818 19.362 15.033 1 73112 45779 5809 28909 28922 52679;52680;52681 52681 -0.11529816663278325 TTDSSYGQNY 10 Unmodified _TTDSSYGQNY_ 0 0 0 nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 MULTI-MSMS UPN47_class_I_Rep_3 4 568.2301635742188 2 568.23055 1134.44655 -0.18867 -0.00010721 0.073725 4.1893E-05 -0.11495 -6.5317E-05 568.2304991803968 29.821 0.51703 33.145 32.877 33.394 3.3235 75 46 2 0 0 0 0.4561 3 4882 4845;4882;4927 15.248 11.304 1 80615 45780 5809 28909 28922 52682;52683;52684 52683 -0.11529816663278325 TTEESLRNYY 10 Unmodified _TTEESLRNYY_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN47_class_I_Rep_1 2 638.297119140625 2 638.296224 1274.5779 0.044767 2.8574E-05 0.26175 0.00016707 0.30651 0.00019565 638.2963941699953 40.437 0.53795 44.109 43.914 44.452 3.6719 62 41 2 0 0 0 0.42663 2 8046 8009;8046 17.443 7.9756 1 96749 45781 2393 28910 28923 52685;52686 52686 -0.048410062953507804 TTEESLRNYY 10 Unmodified _TTEESLRNYY_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MULTI-MSMS UPN47_class_I_Rep_2 3 638.296875 2 638.296224 1274.5779 0.044719 2.8544E-05 0.65542 0.00041835 0.70014 0.0004469 638.2965158893978 40.785 0.51848 44.156 43.982 44.5 3.3712 63 44 2 0 0 0 0.48801 4 8160 8121;8160;8199;8207 12.873 6.1494 1 104470 45782 2393 28910 28923 52687;52688;52689;52690 52688 -0.048410062953507804 TTEESLRNYY 10 Unmodified _TTEESLRNYY_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MSMS UPN47_class_I_Rep_3 4 638.2955932617188 2 638.296224 1274.5779 NaN NaN NaN NaN NaN NaN NaN 41.005 1 44.242 43.742 44.742 3.2372 0 0 0 0.53105 1 8274 8274 8.9762 5.3798 1 45783 2393 28910 28923 52691 52691 -0.048410062953507804 TTEESLRNYY 10 Unmodified _TTEESLRNYY_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MSMS UPN47_class_I_Rep_3 4 638.2981567382812 2 638.296224 1274.5779 NaN NaN NaN NaN NaN NaN NaN 41.113 1 44.35 43.85 44.85 3.2372 0 0 0 0.53105 1 8308 8308 8.4443 4.8478 1 45784 2393 28910 28923 52692 52692 -0.048410062953507804 TTEESLRNYY 10 Unmodified _TTEESLRNYY_ 0 0 0 ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 ENSG00000122566|ENST00000618183|HNRNPA2B1 MSMS UPN47_class_I_Rep_3 4 638.2948608398438 2 638.296224 1274.5779 NaN NaN NaN NaN NaN NaN NaN 41.158 1 44.395 43.895 44.895 3.2372 0 0 0 0.53105 1 8322 8322 4.5289 0.19963 1 45785 2393 28910 28923 52693 52693 -0.048410062953507804 TTEFLYNLY 9 Unmodified _TTEFLYNLY_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 582.2846069335938 2 582.284597 1162.55464 0.39386 0.00022934 -0.15771 -9.1831E-05 0.23615 0.00013751 582.2844546655886 77.145 0.74579 80.56 80.338 81.084 3.4149 119 65 2 0 0 0 0.1249 5 19151 19112;19151;19184;19225;19233 29.082 5.061 1 271470 45786 7091 28911 28924 52694;52695;52696;52697;52698 52695 -0.020134003420253066 TTEFLYNLY 9 Unmodified _TTEFLYNLY_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 582.28466796875 2 582.284597 1162.55464 0.47685 0.00027766 -0.069501 -4.047E-05 0.40735 0.00023719 582.2844147858862 77.355 0.70198 80.686 80.433 81.135 3.3315 164 73 3 0 0 0 0.11683 5 19199 19161;19199;19240;19278;19288 30.637 8.8302 1 214690 45787 7091 28911 28924 52699;52700;52701;52702;52703 52700 -0.020134003420253066 TTEFLYNLY 9 Unmodified _TTEFLYNLY_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MSMS UPN47_class_I_Rep_2 3 582.2846069335938 2 582.284597 1162.55464 NaN NaN NaN NaN NaN NaN NaN 77.842 1 81.185 80.685 81.685 3.3428 0 0 0 0.3377 1 19326 19326 8.7454 0 1 45788 7091 28911 28924 52704 52704 -0.020134003420253066 TTEFLYNLY 9 Unmodified _TTEFLYNLY_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 582.285400390625 2 582.284597 1162.55464 0.46555 0.00027108 -0.091642 -5.3362E-05 0.37391 0.00021772 582.2844435168562 77.521 0.76833 80.79 80.394 81.162 3.269 169 79 3 0 0 0 0.31407 1 19210 19210 13.042 2.2185 1 275670 45789 7091 28911 28924 52705 52705 -0.020134003420253066 TTEFLYNLY 9 Unmodified _TTEFLYNLY_ 0 0 0 ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF ENST00000495274.1_1_21:45742848-45745285:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 582.2826538085938 2 582.284597 1162.55464 0.46765 0.0002723 0.2336 0.00013602 0.70125 0.00040833 582.284472431379 78.306 0.98221 81.588 81.16 82.142 3.2816 254 105 3 0 0 0 0.43153 1 19413 19413 6.2058 0 1 478270 45790 7091 28911 28924 52706 52706 -0.020134003420253066 TTEILRTPL 9 Unmodified _TTEILRTPL_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-SECPEP UPN48_class_I_Rep_3 7 521.9916381835938 2 522.308406 1042.60226 0.26704 0.00013948 -0.6496 -0.00033929 -0.38256 -0.00019981 522.3081046413595 54.347 0.16274 57.916 57.862 58.024 3.5694 13 10 2 0 0 0 0.12354 1 11427 11427 3.5965 0 1 70751 + 45791 19810 28912 28925 52707 52707 0.08266298648823067 TTELVVEAV 9 Unmodified _TTELVVEAV_ 0 0 0 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 MULTI-MSMS UPN47_class_I_Rep_1 2 481.2674255371094 2 480.76604 959.517527 0.1151 5.5338E-05 -0.18721 -9.0005E-05 -0.072107 -3.4667E-05 480.7658734801281 72.308 0.3967 75.688 75.506 75.902 3.3799 43 27 2 0 0 0 0.42249 1 17669 17669 6.7232 0 1 91077 45792 1598 28913 28926 52708 52708 0.03614928112187954 TTEPIEKHL 9 Unmodified _TTEPIEKHL_ 0 0 0 REV__ENSG00000136875|ENST00000374198|PRPF4 REV__ENSG00000136875|ENST00000374198|PRPF4 MSMS UPN46_class_I_Rep_3 1 534.2911376953125 2 534.290214 1066.56587 NaN NaN NaN NaN NaN NaN NaN 108.68 1 108.68 108.18 109.18 0 0 0 0 0.35339 1 26595 26595 7.9102 0 1 + 45793 19206 28914 28927 52709 52709 0.03525421752101465 TTEQHGARY 9 Unmodified _TTEQHGARY_ 0 0 0 nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP nc|ENSG00000231925|O15533-2|TAPBP nc|ENSG00000231925|O15533-2|TAPBP MULTI-MSMS UPN47_class_I_Rep_1 2 531.75146484375 2 531.751787 1061.48902 -0.15539 -8.2629E-05 -0.19863 -0.00010562 -0.35402 -0.00018825 531.7515955864985 13.106 0.60633 16.563 16.455 17.061 3.457 164 66 4 0 0 0 0.0069831 1 231 231 121.35 75.325 1 1041400 45794 5680 28915 28928 52710 52710 -0.039263767443799225 TTEQHGARY 9 Unmodified _TTEQHGARY_ 0 0 0 nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP nc|ENSG00000231925|O15533-2|TAPBP nc|ENSG00000231925|O15533-2|TAPBP MULTI-MSMS UPN47_class_I_Rep_2 3 531.7515258789062 2 531.751787 1061.48902 -0.1169 -6.2163E-05 -0.22192 -0.00011801 -0.33882 -0.00018017 531.7515979518536 13.163 0.71989 16.551 16.433 17.153 3.388 192 81 5 0 0 0 0.014506 2 244 244;313 103.82 63.866 1 893280 45795 5680 28915 28928 52711;52712 52711 -0.039263767443799225 TTEQHGARY 9 Unmodified _TTEQHGARY_ 0 0 0 nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP nc|ENSG00000231925|O15533-2|TAPBP nc|ENSG00000231925|O15533-2|TAPBP MULTI-MSMS UPN47_class_I_Rep_3 4 531.7514038085938 2 531.751787 1061.48902 -0.49052 -0.00026084 0.090005 4.786E-05 -0.40052 -0.00021298 531.7517711710727 13.113 0.65633 16.487 16.358 17.015 3.3734 199 77 5 0 0 0 0.0047467 2 217 217;253 93.938 80.676 1 813810 45796 5680 28915 28928 52713;52714 52713 -0.039263767443799225 TTESKTQIYIG 11 Unmodified _TTESKTQIYIG_ 0 0 0 REV__L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|19|3|sense REV__L1ME3A_dup8107|chr9:33867211-33867704:-|1.3257311418113735|0.0055650154962769|7.9|150.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 620.8223266601562 2 620.824618 1239.63468 NaN NaN NaN NaN NaN NaN NaN 37.835 1 41.223 40.723 41.723 3.3879 0 0 0 0.38417 1 7259 7259 1.1933 0 1 + 45797 28035 28916 28929 52715 52715 0.024450412611486172 TTESLMLFF 9 Unmodified _TTESLMLFF_ 0 0 0 L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|69|3|anti-sense L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|69|3|anti-sense L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.7701416015625 2 544.770268 1087.52598 0.5454 0.00029712 -0.037567 -2.0465E-05 0.50783 0.00027665 544.7702026428777 88.137 0.28024 91.585 91.407 91.687 3.4471 46 35 2 0 0 0 0.17468 1 21924 21924 23.148 0 1 99086 45798 11949 28917 28930 52716 52716 -0.014278412428438969 TTESLMLFF 9 Unmodified _TTESLMLFF_ 0 0 0 L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|69|3|anti-sense L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|69|3|anti-sense L1MD1_dup4430|chr10:79824014-79825030:-|3.974887081826189|0.0368289366045715|6.75|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.76953125 2 544.770268 1087.52598 0.48852 0.00026613 -0.15562 -8.4779E-05 0.3329 0.00018135 544.770176735146 93.325 0.29713 96.73 96.651 96.948 3.4052 61 41 2 0 0 0 0.17468 1 23278 23278 23.148 0 1 223020 45799 11949 28917 28930 52717 52717 -0.014278412428438969 TTEVHPELY 9 Unmodified _TTEVHPELY_ 0 0 0 ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3 ENST00000486268.5_1_20:34129846-34130758:+|nuORF ENST00000486268.5_1_20:34129846-34130758:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 544.7667236328125 2 544.766571 1087.51859 0.016111 8.7766E-06 -0.12625 -6.8777E-05 -0.11014 -6E-05 544.7664732994098 39.311 0.7194 42.976 42.71 43.429 3.6652 115 51 3 0 0 0 0.16559 1 7724 7724 24.021 15.275 1 206760 45800 2524 28918 28931 52718 52718 -0.021668575189096373 TTFIRKEPPI 10 Unmodified _TTFIRKEPPI_ 0 0 0 REV__nc|ENSG00000132326|O15055-2|PER2 REV__nc|ENSG00000132326|O15055-2|PER2 MSMS UPN47_class_I_Rep_1 2 601.3512573242188 2 601.350606 1200.68666 NaN NaN NaN NaN NaN NaN NaN 81.556 1 85.068 84.568 85.568 3.5122 0 0 0 0.53105 1 20352 20352 1.4819 0 1 + 45801 19007 28919 28932 52719 52719 0.09434249465562061 TTGHVIDIY 9 Unmodified _TTGHVIDIY_ 0 0 0 nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS UPN47_class_I_Rep_2 3 509.7635498046875 2 509.763832 1017.51311 -0.22585 -0.00011513 0.096761 4.9325E-05 -0.12909 -6.5804E-05 509.7638195941304 42.208 1.0215 45.569 45.172 46.193 3.3611 175 73 3 0 0 0 0.32219 1 8635 8635 12.532 0 1 420190 45802 1541 28920 28933 52720 52720 0.005054636892964481 TTGKHHIF 8 Unmodified _TTGKHHIF_ 0 0 0 REV__L1MC5a_dup15708|chr19:19440558-19440862:+|1.130758695811624|0.0082851943538909|7.09|151.0|1|1|sense REV__L1MC5a_dup15708|chr19:19440558-19440862:+|1.130758695811624|0.0082851943538909|7.09|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 470.7541809082031 2 470.753601 939.49265 0.12353 5.8152E-05 1.4992 0.00070575 1.6227 0.0007639 470.7540910959786 72.327 0.351 75.801 75.714 76.065 3.4732 42 29 2 0 0 0 0.82752 1 16987 16987 0.79363 0 1 51723 + 45803 27140 28921 28934 52721 52721 0.020483378201447522 TTGKHHIF 8 Unmodified _TTGKHHIF_ 0 0 0 REV__L1MC5a_dup15708|chr19:19440558-19440862:+|1.130758695811624|0.0082851943538909|7.09|151.0|1|1|sense REV__L1MC5a_dup15708|chr19:19440558-19440862:+|1.130758695811624|0.0082851943538909|7.09|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 470.753601 939.49265 0.053574 2.522E-05 1.3539 0.00063735 1.4075 0.00066257 470.75421406818964 72.186 0.040009 75.476 75.447 75.487 3.2899 -0.16246 -5.5711E-05 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 17335 + 45804 27140 28921 28934 0.020483378201447522 TTGKHHIF 8 Unmodified _TTGKHHIF_ 0 0 0 REV__L1MC5a_dup15708|chr19:19440558-19440862:+|1.130758695811624|0.0082851943538909|7.09|151.0|1|1|sense REV__L1MC5a_dup15708|chr19:19440558-19440862:+|1.130758695811624|0.0082851943538909|7.09|151.0|1|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 470.753601 939.49265 0.12353 5.8152E-05 1.4992 0.00070575 1.6227 0.0007639 470.7540910959786 72.327 0.351 75.801 75.714 76.065 3.4732 0.16246 8.1079E-05 NaN 0.79363 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 51723 + 45805 27140 28921 28934 0.020483378201447522 TTGMLILYIFL 11 Unmodified _TTGMLILYIFL_ 0 0 0 ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF MSMS UPN48_class_I_Rep_2 6 642.8684692382812 2 642.867243 1283.71993 NaN NaN NaN NaN NaN NaN NaN 69.011 1 72.532 72.032 73.032 3.5216 0 0 0 0.38417 1 15956 15956 6.2058 0 1 45806 6642 28922 28935 52722 52722 0.0894211519325836 TTGMLILYIFL 11 Unmodified _TTGMLILYIFL_ 0 0 0 ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF MSMS UPN48_class_I_Rep_2 6 642.869873046875 2 642.867243 1283.71993 NaN NaN NaN NaN NaN NaN NaN 69.167 1 72.689 72.189 73.189 3.5216 0 0 0 0.38417 1 16005 16005 5.7319 0 1 45807 6642 28922 28935 52723 52723 0.0894211519325836 TTGMLILYIFL 11 Unmodified _TTGMLILYIFL_ 0 0 0 ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF MSMS UPN48_class_I_Rep_2 6 642.869384765625 2 642.867243 1283.71993 NaN NaN NaN NaN NaN NaN NaN 69.315 1 72.837 72.337 73.337 3.5216 0 0 0 0.38417 1 16050 16050 5.7319 0 1 45808 6642 28922 28935 52724 52724 0.0894211519325836 TTGMLILYIFL 11 Unmodified _TTGMLILYIFL_ 0 0 0 ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF ENST00000415215.1_1_X:73167175-73167235:+|nuORF MSMS UPN48_class_I_Rep_3 7 642.8701171875 2 642.867243 1283.71993 NaN NaN NaN NaN NaN NaN NaN 69.119 1 72.628 72.128 73.128 3.5094 0 0 0 0.27444 1 15899 15899 13.906 0 1 45809 6642 28922 28935 52725 52725 0.0894211519325836 TTGSNGKF 8 Unmodified _TTGSNGKF_ 0 0 0 L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|3|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|3|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 406.2086486816406 2 406.200867 810.387182 NaN NaN NaN NaN NaN NaN NaN 29.46 1 32.952 32.452 33.452 3.4923 0 0 0 0.40738 1 4721 4721 0.79363 0 1 45810 9107 28923 28936 52726 52726 -0.025596230961241417 TTHLLVRF 8 Unmodified _TTHLLVRF_ 0 0 0 REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|84|3|anti-sense REV__Tigger3b_dup3339|chr8:102244307-102245454:+|1.441764506483601|0.1283225971144678|3.49|151.0|84|3|anti-sense MSMS UPN46_class_I_Rep_3 1 493.7919921875 2 493.792727 985.5709 NaN NaN NaN NaN NaN NaN NaN 66.664 1 66.664 66.164 67.164 0 0 0 0 0.40625 1 15137 15137 2.3027 0 1 + 45811 32744 28924 28937 52727 52727 0.07753770405372507 TTIANLAQYL 10 Unmodified _TTIANLAQYL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 554.3056030273438 2 554.305864 1106.59717 0.44295 0.00024553 -0.34691 -0.00019229 0.096046 5.3239E-05 554.3055303748595 69.709 0.74385 72.913 72.675 73.419 3.2044 107 58 2 0 0 0 0.48573 1 17004 17004 13.042 0 1 208980 + 45812 19771 28925 28938 52728 52728 0.04813994786195508 TTICLSPVYL 10 Unmodified _TTICLSPVYL_ 0 0 0 L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|90|2|anti-sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|90|2|anti-sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|90|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 555.2991943359375 2 555.299193 1108.58383 0.47698 0.00026487 -0.26404 -0.00014662 0.21294 0.00011824 555.2989727528928 77.263 1.2363 80.594 80.19 81.426 3.3315 198 126 2 0 0 0 0.47413 2 19157 19157;19292 13.906 3.0821 1 176350 45813 9254 28926 28939 52729;52730 52729 0.03388420682586002 TTICLSPVYL 10 Unmodified _TTICLSPVYL_ 0 0 0 L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|90|2|anti-sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|90|2|anti-sense L1M8_dup852|chr8:140246997-140248681:-|1.2110767152508353|0.0089523309774788|7.08|150.0|90|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 555.299072265625 2 555.299193 1108.58383 0.46199 0.00025655 -0.2753 -0.00015287 0.1867 0.00010367 555.2989387562252 77.488 1.1751 80.757 80.051 81.226 3.269 176 127 2 0 0 0 0.47413 1 19292 19292 13.906 2.2658 1 235070 45814 9254 28926 28939 52731 52731 0.03388420682586002 TTIFIYKT 8 Unmodified _TTIFIYKT_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|48|2|anti-sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_1 5 493.7812805175781 2 493.781493 985.548434 NaN NaN NaN NaN NaN NaN NaN 77.452 1 80.974 80.474 81.474 3.5221 0 0 0 0.40157 1 18432 18432 7.2892 0.56607 1 + 45815 31237 28927 28940 52732 52732 0.05508126217080189 TTIKIKEYL 9 Unmodified _TTIKIKEYL_ 0 0 0 L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|24|2|sense L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|24|2|sense L1MB7_dup2753|chr2:119971424-119972981:-|1.0175350457724577|0.043351159563243|4.55|150.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 554.8338012695312 2 554.834257 1107.65396 NaN NaN NaN NaN NaN NaN NaN 69.146 1 72.514 72.014 73.014 3.3678 0 0 0 0.38299 1 16738 16738 4.756 0 1 45816 10817 28928 28941 52733 52733 0.10444042342692228 TTIKLVIF 8 Unmodified _TTIKLVIF_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MSMS UPN47_class_I_Rep_3 4 467.6299133300781 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 84.3 1 87.661 87.161 88.161 3.3615 0 0 0 0.40746 1 21156 21156 0.69038 0 1 45817 4140 28929 28942 52734 52734 0.12045306976415304 TTIKSVSSLG 10 Unmodified _TTIKSVSSLG_ 0 0 0 L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|52|2|sense;L1PA5_dup4951|chr7:35659883-35664948:-|3.7771270396535455|0.1495531930777703|4.66|151.0|72|2|sense;L1PA8A_dup1872|chr11:73502119-73505135:+|1.6830460164247447|0.0185257668758611|6.51|151.0|56|3|sense L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|52|2|sense L1PA8A_dup2036|chr13:21590884-21594990:+|1.0884915960532482|0.017177757488689|5.99|150.0|52|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.7847900390625 2 496.784764 991.554975 -0.33438 -0.00016611 0.038858 1.9304E-05 -0.29552 -0.00014681 496.7847931757603 16.443 0.597 19.965 19.733 20.33 3.5224 93 69 2 0 0 0 0.56543 1 1024 1024 0 0 1 53031 45818 14481 28930 28943 52735 52735 0.058860193778286884 TTIPLLLPV 9 Unmodified _TTIPLLLPV_ 0 0 0 REV__L1PA10_dup2190|chr5:78064914-78067071:+|2.4849983888566967|0.0349847043966828|6.15|151.0|29|2|sense REV__L1PA10_dup2190|chr5:78064914-78067071:+|2.4849983888566967|0.0349847043966828|6.15|151.0|29|2|sense MSMS UPN47_class_I_Rep_2 3 483.98065185546875 2 483.815336 965.616119 NaN NaN NaN NaN NaN NaN NaN 93.654 1 97.123 96.623 97.623 3.4687 0 0 0 0.4007 1 23103 23103 0.52476 0 1 + 45819 28944 28931 28944 52736 52736 0.1319357614790988 TTIRKKKII 9 Unmodified _TTIRKKKII_ 0 0 0 REV__L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|10|1|sense REV__L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 550.8796997070312 2 550.879333 1099.74411 0.4024 0.00022168 1.2688 0.00069896 1.6712 0.00092063 550.8798061013742 108.78 0.22219 108.78 108.7 108.92 0 26 18 2 0 0 0 0.50582 1 26614 26614 0 0 1 9698500 + 45820 30564 28932 28945 52737 52737 0.19823136461809554 TTIRKKKII 9 Unmodified _TTIRKKKII_ 0 0 0 REV__L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|10|1|sense REV__L1PB3_dup2810|chr13:26280992-26283327:+|2.213048997519541|0.028519682847616|6.28|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.879638671875 2 550.879333 1099.74411 0.53472 0.00029457 0.17233 9.4933E-05 0.70705 0.0003895 550.8792775777594 108.28 0.57262 111.92 111.57 112.14 3.6355 174 51 4 0 0 0 0.50582 1 26653 26653 0 0 1 13382000 + 45821 30564 28932 28945 52738 52738 0.19823136461809554 TTIRLAYL 8 Unmodified _TTIRLAYL_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MULTI-MSMS UPN48_class_I_Rep_1 5 475.7870178222656 2 475.78711 949.559667 0.15887 7.5588E-05 -0.075649 -3.5993E-05 0.083221 3.9595E-05 475.7869982835228 55.281 0.94331 58.789 58.374 59.317 3.5082 153 59 3 0 0 0 0.82752 1 11683 11683 14.838 0.93222 1 962230 + 45822 18045 28933 28946 52739 52739 0.08286948311229025 TTIRLAYL 8 Unmodified _TTIRLAYL_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MULTI-MSMS UPN48_class_I_Rep_2 6 475.787109375 2 475.78711 949.559667 0.34525 0.00016427 -0.19094 -9.0845E-05 0.15431 7.3421E-05 475.7869470609959 55.172 1.0728 58.728 58.336 59.409 3.5559 148 63 3 0 0 0 0.82752 1 11851 11851 10.074 2.7847 1 932790 + 45823 18045 28933 28946 52740 52740 0.08286948311229025 TTIRLAYL 8 Unmodified _TTIRLAYL_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MULTI-MSMS UPN48_class_I_Rep_3 7 475.7870178222656 2 475.78711 949.559667 0.088401 4.206E-05 0.047355 2.2531E-05 0.13576 6.4591E-05 475.7870465516694 55.059 1.1188 58.628 58.277 59.396 3.5694 145 66 3 0 0 0 0.82752 1 11776 11776 18.146 3.3081 1 1422400 + 45824 18045 28933 28946 52741 52741 0.08286948311229025 TTISVNPK 8 Unmodified _TTISVNPK_ 0 0 0 L1MDa_dup2778|chr7:47340719-47342131:-|7.067736838984272|0.4082244758708406|4.11|151.0|16|1|sense L1MDa_dup2778|chr7:47340719-47342131:-|7.067736838984272|0.4082244758708406|4.11|151.0|16|1|sense L1MDa_dup2778|chr7:47340719-47342131:-|7.067736838984272|0.4082244758708406|4.11|151.0|16|1|sense MSMS UPN46_class_I_Rep_3 1 430.25616455078125 2 430.247818 858.481082 NaN NaN NaN NaN NaN NaN NaN 39.377 1 39.377 38.877 39.877 0 0 0 0 0.40625 1 7562 7562 2.3027 1.5091 1 45825 12112 28934 28947 52742 52742 0.04618096006151973 TTKILLLKK 9 Unmodified _TTKILLLKK_ 0 0 0 L1PA7_dup11718|chr15:42301060-42304391:+|1.3344387139311995|0.0669808402247086|4.32|151.0|81|3|sense L1PA7_dup11718|chr15:42301060-42304391:+|1.3344387139311995|0.0669808402247086|4.32|151.0|81|3|sense L1PA7_dup11718|chr15:42301060-42304391:+|1.3344387139311995|0.0669808402247086|4.32|151.0|81|3|sense MSMS UPN47_class_I_Rep_2 3 529.370849609375 2 529.37081 1056.72707 NaN NaN NaN NaN NaN NaN NaN 71.488 1 74.778 74.278 75.278 3.2899 0 0 0 0.4029 1 17474 17474 0 0 1 45826 14733 28935 28948 52743 52743 0.20097215856003459 TTKKKKKKK 9 Unmodified _TTKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN47_class_I_Rep_1 2 559.3926391601562 2 559.392608 1116.77066 0.51359 0.0002873 -0.16536 -9.2504E-05 0.34822 0.00019479 559.3923795300551 108.19 0.35873 111.82 111.76 112.11 3.6355 57 36 3 0 0 0 0.50582 1 26551 26551 0 0 1 10402000 45827 2683 28936 28949 52744 52744 0.21694825353119995 TTKKKKKKK 9 Unmodified _TTKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN47_class_I_Rep_1 2 559.3927612304688 2 559.392608 1116.77066 0.51367 0.00028734 -0.088026 -4.9241E-05 0.42564 0.0002381 559.3924765078294 108.27 0.28226 111.9 111.87 112.15 3.6355 52 27 2 0 0 0 0.50582 1 26599 26599 0 0 1 7555400 45828 2683 28936 28949 52745 52745 0.21694825353119995 TTKKKKKKK 9 Unmodified _TTKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN47_class_I_Rep_2 3 559.392578125 2 559.392608 1116.77066 0.63495 0.00035519 -0.15646 -8.752E-05 0.47849 0.00026767 559.3924242721772 108.22 0.25317 111.75 111.64 111.89 3.5333 55 23 3 0 0 0 0.50582 2 26207 26207;26249 0 0 1 13561000 45829 2683 28936 28949 52746;52747 52746 0.21694825353119995 TTKKKKKKK 9 Unmodified _TTKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS UPN48_class_I_Rep_2 6 559.392333984375 2 559.392608 1116.77066 0.49548 0.00027717 -0.10873 -6.0822E-05 0.38675 0.00021635 559.3924198204195 108.02 0.11688 111.69 111.59 111.71 3.6746 34 10 4 0 0 0 0.50582 1 25568 25568 0 0 1 15213000 45830 2683 28936 28949 52748 52748 0.21694825353119995 TTKKKKKKK 9 Unmodified _TTKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MSMS UPN48_class_I_Rep_3 7 559.392822265625 2 559.392608 1116.77066 NaN NaN NaN NaN NaN NaN NaN 108.02 1 111.7 111.2 112.2 3.6813 0 0 0 0.4029 1 25519 25519 0 0 1 45831 2683 28936 28949 52749 52749 0.21694825353119995 TTKKNILKLL 10 Unmodified _TTKKNILKLL_ 0 0 0 REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|59|3|sense REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 586.3924560546875 2 586.392273 1170.76999 NaN NaN NaN NaN NaN NaN NaN 45.405 1 45.405 44.905 45.905 0 0 0 0 0.53105 1 9230 9230 0.40072 0 1 + 45832 26777 28937 28950 52750 52750 0.19143985913410688 TTKKNILKLL 10 Unmodified _TTKKNILKLL_ 0 0 0 REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|59|3|sense REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|59|3|sense MSMS UPN46_class_I_Rep_3 1 586.3924560546875 2 586.392273 1170.76999 NaN NaN NaN NaN NaN NaN NaN 46.741 1 46.741 46.241 47.241 0 0 0 0 0.53105 1 9606 9606 0.40072 0 1 + 45833 26777 28937 28950 52751 52751 0.19143985913410688 TTKKNILKLL 10 Unmodified _TTKKNILKLL_ 0 0 0 REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|59|3|sense REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|59|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 586.3924560546875 2 586.392273 1170.76999 0.4962 0.00029097 -0.05662 -3.3201E-05 0.43958 0.00025777 586.3921658185835 46.7 0.06366 46.7 46.68 46.744 0 7 3 3 0 0 0 0.84575 1 9606 9606 0.40072 0 1 2627600 + 45834 26777 28937 28950 52752 52752 0.19143985913410688 TTKKTKIGLK 10 Unmodified _TTKKTKIGLK_ 0 0 0 REV__L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|146|3|sense REV__L1PA11_dup1250|chr5:37679993-37686052:-|3.391822949467965|0.1157176527166804|4.87|151.0|146|3|sense MSMS UPN46_class_I_Rep_3 1 559.3685913085938 2 559.368798 1116.72304 NaN NaN NaN NaN NaN NaN NaN 102.05 1 102.05 101.55 102.55 0 0 0 0 0.53105 1 24902 24902 0 0 1 + 45835 29000 28938 28951 52753 52753 0.1693512636225023 TTKLFLVL 8 Unmodified _TTKLFLVL_ 0 0 0 REV__Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense REV__Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_2 3 467.80078125 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 63.833 1 67.088 66.588 67.588 3.2556 0 0 0 0.40753 1 15167 15167 0.6015 0 1 + 45836 17278 28939 28952 52754 52754 0.12045306976403936 TTKLFLVL 8 Unmodified _TTKLFLVL_ 0 0 0 REV__Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense REV__Charlie1_dup990|chr8:124303974-124305228:+|1.4218007600760396|0.0714827454918969|4.31|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_2 3 467.8009948730469 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 64.137 1 67.393 66.893 67.893 3.2556 0 0 0 0.40753 1 15259 15259 0.6015 0 1 + 45837 17278 28939 28952 52755 52755 0.12045306976403936 TTKLKPSNAF 10 Unmodified _TTKLKPSNAF_ 0 0 0 REV__L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|52|2|sense REV__L1ME3B_dup406|chr1:176143784-176146026:+|1.2723348898708988|0.011036276439155|6.85|150.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 553.8137817382812 2 553.813856 1105.61316 NaN NaN NaN NaN NaN NaN NaN 42.814 1 46.175 45.675 46.675 3.3611 0 0 0 0.53105 1 8769 8769 2.9952 0 1 + 45838 28057 28940 28953 52756 52756 0.06457701023077789 TTKLVSKK 8 Unmodified _TTKLVSKK_ 0 0 0 L1M4_dup669|chr1:145841513-145841995:-|1.372388708089822|0.3377737044666122|2.02|151.0|6|1|sense L1M4_dup669|chr1:145841513-145841995:-|1.372388708089822|0.3377737044666122|2.02|151.0|6|1|sense L1M4_dup669|chr1:145841513-145841995:-|1.372388708089822|0.3377737044666122|2.02|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 452.7961120605469 2 452.794935 903.575317 NaN NaN NaN NaN NaN NaN NaN 18.202 1 18.202 17.702 18.702 0 0 0 0 0.40753 1 1555 1555 0.6015 0 1 45839 8903 28941 28954 52757 52757 0.11967234828273376 TTKNTQKP 8 Unmodified _TTKNTQKP_ 0 0 0 REV__L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|4|1|sense REV__L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 459.2548522949219 2 459.256174 916.497795 NaN NaN NaN NaN NaN NaN NaN 44.511 1 44.511 44.011 45.011 0 0 0 0 0.40604 1 8977 8977 2.5775 0 1 + 45840 27203 28942 28955 52758 52758 0.03620596892085359 TTKRKHWR 8 Unmodified _TTKRKHWR_ 0 0 0 L1MA3_dup8275|chr18:32058646-32059790:-|5.487105444991401|0.0346817344823365|7.31|151.0|25|3|sense;L1MA3_dup8537|chr20:1347835-1350325:-|3.186776957117721|0.2834041440515368|3.49|151.0|15|1|sense L1MA3_dup8275|chr18:32058646-32059790:-|5.487105444991401|0.0346817344823365|7.31|151.0|25|3|sense L1MA3_dup8275|chr18:32058646-32059790:-|5.487105444991401|0.0346817344823365|7.31|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 556.8248291015625 2 556.825424 1111.63629 NaN NaN NaN NaN NaN NaN NaN 86.116 1 86.116 85.616 86.616 0 0 0 0 0.40746 1 20579 20579 0.69038 0 1 45841 9643 28943 28956 52759 52759 0.08494184651067371 TTKSPLII 8 Unmodified _TTKSPLII_ 0 0 0 nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C nc|ENSG00000171988|Q15652-2|JMJD1C nc|ENSG00000171988|Q15652-2|JMJD1C MSMS UPN47_class_I_Rep_1 2 436.7747497558594 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 83.229 1 86.767 86.267 87.267 3.5386 0 0 0 0.40625 1 20810 20810 2.3027 0 1 45842 4554 28944 28957 52760 52760 0.09696143562666748 TTKVVPTP 8 Unmodified _TTKVVPTP_ 0 0 0 REV__ENST00000483671.1_1_3:16358337-16412408:-|nuORF REV__ENST00000483671.1_1_3:16358337-16412408:-|nuORF MSMS UPN48_class_I_Rep_3 7 421.75146484375 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 68.667 1 72.176 71.676 72.676 3.5094 0 0 0 0.40643 1 15761 15761 2.0598 1.3694 1 + 45843 18976 28945 28958 52761 52761 0.06383284011531032 TTKWLFTR 8 Unmodified _TTKWLFTR_ 0 0 0 REV__ENST00000442151.6_2_11:35243988-35244027:+|nuORF REV__ENST00000442151.6_2_11:35243988-35244027:+|nuORF MSMS UPN47_class_I_Rep_1 2 526.798095703125 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.57 1 27.299 26.799 27.799 3.7298 0 0 0 0.40625 1 2936 2936 2.3027 0 1 + 45844 22334 28946 28959 52762 52762 0.05773753059793307 TTLACEAT 8 Unmodified _TTLACEAT_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS UPN47_class_I_Rep_2 3 404.79180908203125 2 405.189111 808.363669 NaN NaN NaN NaN NaN NaN NaN 78.302 1 81.645 81.145 82.145 3.3428 0 0 0 0.40604 1 19449 19449 2.5775 0 1 45845 3289 28947 28960 52763 52763 -0.04817804924982738 TTLAFSFKN 9 Unmodified _TTLAFSFKN_ 0 0 0 REV__Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|84|1|anti-sense REV__Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|84|1|anti-sense MSMS UPN47_class_I_Rep_1 2 514.7921752929688 2 514.7742 1027.53385 NaN NaN NaN NaN NaN NaN NaN 66.556 1 69.913 69.413 70.413 3.3576 0 0 0 0.32573 1 15951 15951 9.3831 0.035688 1 + 45846 32415 28948 28961 52764 52764 0.021180540689556437 TTLCFTTY 8 Unmodified _TTLCFTTY_ 0 0 0 REV__L1MD2_dup6045|chrX:44921187-44922028:-|2.3819406972988477|0.0139115862117019|7.42|151.0|61|3|anti-sense REV__L1MD2_dup6045|chrX:44921187-44922028:-|2.3819406972988477|0.0139115862117019|7.42|151.0|61|3|anti-sense MSMS UPN46_class_I_Rep_3 1 475.2205810546875 2 475.220411 948.426269 NaN NaN NaN NaN NaN NaN NaN 104.43 1 104.43 103.93 104.93 0 0 0 0 0.40604 1 25499 25499 2.5775 0 1 + 45847 27423 28949 28962 52765 52765 -0.05000658856795326 TTLHKLSVL 9 Unmodified _TTLHKLSVL_ 0 0 0 REV__ENST00000282488.11_1_3:152017923-152017977:+|nuORF REV__ENST00000282488.11_1_3:152017923-152017977:+|nuORF MSMS UPN48_class_I_Rep_2 6 506.3133850097656 2 506.313492 1010.61243 NaN NaN NaN NaN NaN NaN NaN 58.964 1 62.463 61.963 62.963 3.4987 0 0 0 0.32573 1 12891 12891 9.3831 2.0939 1 + 45848 21630 28950 28963 52766 52766 0.1075490637402936 TTLHKLSVL 9 Unmodified _TTLHKLSVL_ 0 0 0 REV__ENST00000282488.11_1_3:152017923-152017977:+|nuORF REV__ENST00000282488.11_1_3:152017923-152017977:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 505.7622375488281 2 506.313492 1010.61243 0.22561 0.00011423 -0.68623 -0.00034745 -0.46062 -0.00023322 506.3131576048707 58.802 0.51345 62.325 62.097 62.61 3.5231 54 35 2 0 0 0 0.12157 1 12844 12844 6.2058 0 1 113130 + 45849 21630 28950 28963 52767 52767 0.1075490637402936 TTLKNRPLS 9 Unmodified _TTLKNRPLS_ 0 0 0 nc|ENSG00000169129|Q8N4X5-3|AFAP1L2;ENST00000491814.1_1_10:116056685-116061337:-|nuORF;nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2 nc|ENSG00000169129|Q8N4X5-3|AFAP1L2 nc|ENSG00000169129|Q8N4X5-3|AFAP1L2 MULTI-MSMS UPN48_class_I_Rep_1 5 515.3067016601562 2 515.306198 1028.59784 0.25635 0.0001321 0.24389 0.00012568 0.50025 0.00025778 515.3062980484322 87.585 0.63313 91.204 90.858 91.491 3.6187 102 69 2 0 0 0 0.47197 1 21000 21000 3.5965 0 1 110030 45850 4406 28951 28964 52768 52768 0.08468834225891442 TTLLDHVI 8 Unmodified _TTLLDHVI_ 0 0 0 REV__nc|ENSG00000103197|P49815-7|TSC2 REV__nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS UPN47_class_I_Rep_3 4 456.2633972167969 2 456.263468 910.512382 -0.24061 -0.00010978 0.32572 0.00014862 0.085114 3.8835E-05 456.26350685802765 56.965 0.91532 60.137 59.779 60.694 3.1721 174 76 3 0 0 0 0.82752 1 13192 13192 20.871 0 1 705610 + 45851 18220 28952 28965 52769 52769 0.053546690402299646 TTLLHSHV 8 Unmodified _TTLLHSHV_ 0 0 0 MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|21|3|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|21|3|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2545471191406 2 454.253434 906.492316 NaN NaN NaN NaN NaN NaN NaN 105.84 1 109.55 109.05 110.05 3.7088 0 0 0 0.40604 1 25962 25962 2.5775 0 1 45852 16265 28953 28966 52770 52770 0.03532918100290772 TTLLHSHV 8 Unmodified _TTLLHSHV_ 0 0 0 MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|21|3|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|21|3|anti-sense MLT1A1_dup3359|chr8:67216171-67216507:+|1.1269904716258872|0.0632976025312101|4.15|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.25537109375 2 454.253434 906.492316 NaN NaN NaN NaN NaN NaN NaN 105.98 1 109.69 109.19 110.19 3.7088 0 0 0 0.40604 1 25994 25994 2.5775 0 1 45853 16265 28953 28966 52771 52771 0.03532918100290772 TTLLRKLSG 9 Unmodified _TTLLRKLSG_ 0 0 0 ENST00000485486.1_1_X:48334728-48336416:+|nuORF ENST00000485486.1_1_X:48334728-48336416:+|nuORF ENST00000485486.1_1_X:48334728-48336416:+|nuORF MSMS UPN48_class_I_Rep_1 5 494.8135681152344 2 494.811116 987.60768 NaN NaN NaN NaN NaN NaN NaN 68.959 1 72.413 71.913 72.913 3.4548 0 0 0 0.38639 1 15961 15961 3.9444 0 1 45854 7031 28954 28967 52772 52772 0.11338022231279865 TTLPLIRGGQ 10 Unmodified _TTLPLIRGGQ_ 0 0 0 REV__ENST00000260361.8_2_15:41694416-41694521:-|nuORF REV__ENST00000260361.8_2_15:41694416-41694521:-|nuORF MSMS UPN48_class_I_Rep_2 6 528.3134765625 2 528.314023 1054.61349 NaN NaN NaN NaN NaN NaN NaN 89.632 1 93.379 92.879 93.879 3.7471 0 0 0 0.53105 1 21362 21362 1.4819 0 1 + 45855 21553 28955 28968 52773 52773 0.08837120742964544 TTLQIAHLY 9 Unmodified _TTLQIAHLY_ 0 0 0 REV__L1MB7_dup21187|chr19:14414963-14415294:-|2.1519358785275235|0.381209790487976|2.5|151.0|13|1|anti-sense REV__L1MB7_dup21187|chr19:14414963-14415294:-|2.1519358785275235|0.381209790487976|2.5|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 530.314208984375 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 59.222 1 62.639 62.139 63.139 3.4171 0 0 0 0.38478 1 13735 13735 4.3292 0.38484 1 + 45856 26209 28956 28969 52774 52774 0.049100294773325004 TTLRALYL 8 Unmodified _TTLRALYL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-MSMS UPN48_class_I_Rep_1 5 475.78717041015625 2 475.78711 949.559667 0.15887 7.5588E-05 -0.075649 -3.5993E-05 0.083221 3.9595E-05 475.7869982835228 55.281 0.94331 58.789 58.374 59.317 3.5082 153 59 3 0 0 0 0.82752 5 11888 11725;11766;11809;11847;11888 54.774 12.679 1 962230 45857 3512 28957 28970 52775;52776;52777;52778;52779 52779 0.08286948311229025 TTLRALYL 8 Unmodified _TTLRALYL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-MSMS UPN48_class_I_Rep_2 6 475.78692626953125 2 475.78711 949.559667 0.34525 0.00016427 -0.19094 -9.0845E-05 0.15431 7.3421E-05 475.7869470609959 55.172 1.0728 58.728 58.336 59.409 3.5559 148 63 3 0 0 0 0.82752 5 11641 11641;11685;11726;11767;11805 46.021 11.919 1 932790 45858 3512 28957 28970 52780;52781;52782;52783;52784 52780 0.08286948311229025 TTLRALYL 8 Unmodified _TTLRALYL_ 0 0 0 ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENSG00000148484|ENST00000345264|RSU1 ENSG00000148484|ENST00000345264|RSU1 MULTI-MSMS UPN48_class_I_Rep_3 7 475.7873229980469 2 475.78711 949.559667 0.088401 4.206E-05 0.047355 2.2531E-05 0.13576 6.4591E-05 475.7870465516694 55.059 1.1188 58.628 58.277 59.396 3.5694 145 66 3 0 0 0 0.82752 5 11562 11562;11606;11652;11697;11736 46.021 11.919 1 1422400 45859 3512 28957 28970 52785;52786;52787;52788;52789 52785 0.08286948311229025 TTLRHMNQI 9 Unmodified _TTLRHMNQI_ 0 0 0 L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense L1ME4a_dup26871|chr14:50478705-50479431:-|2.7934528187673937|0.0883443601993247|4.98|151.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.2943115234375 2 557.295307 1112.57606 0.43216 0.00024084 -0.83209 -0.00046372 -0.39992 -0.00022287 557.2947643843371 65.185 0.58189 68.365 67.997 68.579 3.1795 56 45 2 0 0 0 0.49026 1 15544 15544 1.6526 0 1 111210 45860 12869 28958 28971 52790 52790 0.024277062056853538 TTLRLTHT 8 Unmodified _TTLRLTHT_ 0 0 0 REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|50|2|sense REV__L1PA15_dup1684|chr3:188627099-188630646:+|1.0085522461902137|0.2612181316689689|1.95|151.0|50|2|sense MSMS UPN48_class_I_Rep_1 5 471.77081298828125 2 471.771991 941.529429 NaN NaN NaN NaN NaN NaN NaN 115.8 1 119.43 118.93 119.93 3.6282 0 0 0 0.40746 1 28182 28182 0.69038 0 1 + 45861 29191 28959 28972 52791 52791 0.056325896460293734 TTLRWCCAR 9 Unmodified _TTLRWCCAR_ 0 0 0 REV__ENST00000372826.6_1_20:43566725-43587002:+|nuORF REV__ENST00000372826.6_1_20:43566725-43587002:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.7908325195312 2 555.270778 1108.527 NaN NaN NaN NaN NaN NaN NaN 15.303 1 18.799 18.299 19.299 3.4968 0 0 0 0.40098 1 783 783 0.45834 0 1 + 45862 21980 28960 28973 52792 52792 -0.022919053549458113 TTLTCRRL 8 Unmodified _TTLTCRRL_ 0 0 0 REV__ENSG00000130449|ENST00000252744|ZSWIM6 REV__ENSG00000130449|ENST00000252744|ZSWIM6 MSMS UPN48_class_I_Rep_1 5 482.2734375 2 482.273844 962.533135 NaN NaN NaN NaN NaN NaN NaN 88.925 1 92.548 92.048 93.048 3.6229 0 0 0 0.40625 1 21338 21338 2.3027 0 1 + 45863 18938 28961 28974 52793 52793 0.05036936148269433 TTLTCRRL 8 Unmodified _TTLTCRRL_ 0 0 0 REV__ENSG00000130449|ENST00000252744|ZSWIM6 REV__ENSG00000130449|ENST00000252744|ZSWIM6 MSMS UPN48_class_I_Rep_1 5 482.2722473144531 2 482.273844 962.533135 NaN NaN NaN NaN NaN NaN NaN 89.239 1 92.865 92.365 93.365 3.6255 0 0 0 0.40625 1 21422 21422 2.3027 0 1 + 45864 18938 28961 28974 52794 52794 0.05036936148269433 TTLTWRHI 8 Unmodified _TTLTWRHI_ 0 0 0 REV__ENST00000493380.5_1_10:14125603-14125789:-|nuORF REV__ENST00000493380.5_1_10:14125603-14125789:-|nuORF MSMS UPN46_class_I_Rep_3 1 514.2793579101562 2 514.287808 1026.56106 NaN NaN NaN NaN NaN NaN NaN 30.898 1 30.898 30.398 31.398 0 0 0 0 0.40746 1 5093 5093 0.69038 0 1 + 45865 22644 28962 28975 52795 52795 0.048845823999727145 TTLVRRVE 8 Unmodified _TTLVRRVE_ 0 0 0 REV__LTR49-int_dup1297|chr10:911251-912191:+|5.285430885943925|0.4364351631598755|3.6|151.0|15|2|sense REV__LTR49-int_dup1297|chr10:911251-912191:+|5.285430885943925|0.4364351631598755|3.6|151.0|15|2|sense MSMS UPN48_class_I_Rep_3 7 487.29364013671875 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 95.152 1 99.054 98.554 99.554 3.9016 0 0 0 0.40604 1 22553 22553 2.5775 0 1 + 45866 30941 28963 28976 52796 52796 0.08424565054428967 TTMDQLWQN 9 Unmodified _TTMDQLWQN_ 0 0 0 REV__ENSG00000136244|ENST00000258743|IL6 REV__ENSG00000136244|ENST00000258743|IL6 MSMS UPN48_class_I_Rep_2 6 568.7579956054688 2 568.755681 1135.49681 NaN NaN NaN NaN NaN NaN NaN 112.39 1 116.06 115.56 116.56 3.6648 0 0 0 0.39518 1 26776 26776 1.8442 0.19162 1 + 45867 19179 28964 28977 52797 52797 -0.06551985539113048 TTNFKAVKSC 10 Unmodified _TTNFKAVKSC_ 0 0 0 L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|8|1|sense L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|8|1|sense L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 549.796630859375 2 549.784241 1097.55393 NaN NaN NaN NaN NaN NaN NaN 59.111 1 62.528 62.028 63.028 3.4171 0 0 0 0.53105 1 13701 13701 8.1555 0 1 45868 13384 28965 28978 52798 52798 0.009054817372543766 TTPIDINHI 9 Unmodified _TTPIDINHI_ 0 0 0 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS UPN48_class_I_Rep_3 7 512.2771606445312 2 512.277106 1022.53966 NaN NaN NaN NaN NaN NaN NaN 53.649 1 57.233 56.733 57.733 3.5836 0 0 0 0.38784 1 11202 11202 3.5965 0.31518 1 + 45869 18168 28966 28979 52799 52799 0.029291525806115715 TTPIYVPIAVR 11 Unmodified _TTPIYVPIAVR_ 0 0 0 REV__L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|89|1|anti-sense REV__L1MD2_dup9628|chr18:12843768-12845707:-|1.6112469653108277|0.0643973627259444|4.65|151.0|89|1|anti-sense MSMS UPN47_class_I_Rep_3 4 615.3671264648438 2 615.366256 1228.71796 NaN NaN NaN NaN NaN NaN NaN 67.012 1 70.203 69.703 70.703 3.1914 0 0 0 0.38417 1 16199 16199 2.7352 1.2533 1 + 45870 27455 28967 28980 52800 52800 0.11274822499649417 TTQKIEHLY 9 Unmodified _TTQKIEHLY_ 0 0 0 REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|49|3|sense REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.8037719726562 2 566.803488 1131.59242 0.34241 0.00019408 0.070155 3.9764E-05 0.41256 0.00023384 566.803400657727 66.032 0.34978 69.39 69.208 69.558 3.3576 32 23 2 0 0 0 0.36392 1 15804 15804 10.074 0.6908 1 57112 + 45871 25165 28968 28981 52801 52801 0.031891106434159155 TTQKIEHLY 9 Unmodified _TTQKIEHLY_ 0 0 0 REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|49|3|sense REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 566.8040771484375 2 566.803488 1131.59242 0.37238 0.00021107 -0.25635 -0.0001453 0.11604 6.5769E-05 566.8030760485876 66.252 0.4126 69.511 69.36 69.773 3.2588 29 23 2 0 0 0 0.36392 1 15958 15958 10.074 0.72649 1 60334 + 45872 25165 28968 28981 52802 52802 0.031891106434159155 TTQKIEHLY 9 Unmodified _TTQKIEHLY_ 0 0 0 REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|49|3|sense REV__L1MA4_dup387|chr1:160318498-160320327:+|1.291341159871971|0.0793090501145665|4.03|151.0|49|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 566.803488 1131.59242 0.34241 0.00019408 0.070155 3.9764E-05 0.41256 0.00023384 566.803400657727 66.032 0.34978 69.39 69.208 69.558 3.3576 -0.060582 0.00016281 NaN 10.074 32 23 2 NaN NaN NaN NaN 0 NaN NaN 0 57112 + 45873 25165 28968 28981 0.031891106434159155 TTQSHTRIPS 10 Unmodified _TTQSHTRIPS_ 0 0 0 L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|55|3|anti-sense L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|55|3|anti-sense L1M1_dup2519|chr4:128985913-128987097:+|1.4713425405557454|0.0539641968868756|4.77|150.0|55|3|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2959594726562 2 564.293819 1126.57309 NaN NaN NaN NaN NaN NaN NaN 29.387 1 33.018 32.518 33.518 3.6316 0 0 0 0.53105 1 4167 4167 1.1933 0 1 45874 8519 28969 28982 52803 52803 0.014861543525057641 TTQSRKFY 8 Unmodified _TTQSRKFY_ 0 0 0 L1MB7_dup18573|chr15:99656801-99657304:-|1.1771454189956627|0.0790570733482495|3.9|151.0|17|3|sense L1MB7_dup18573|chr15:99656801-99657304:-|1.1771454189956627|0.0790570733482495|3.9|151.0|17|3|sense L1MB7_dup18573|chr15:99656801-99657304:-|1.1771454189956627|0.0790570733482495|3.9|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.749267578125 2 515.769448 1029.52434 0.036507 1.8829E-05 0.053409 2.7547E-05 0.089916 4.6376E-05 515.769199140766 49.043 0.53082 52.389 52.115 52.646 3.3465 56 37 2 0 0 0 0.82752 2 10574 10574;10607 5.7604 5.7604 1 101970 45875 10763 28970 28983 52804;52805 52804 0.010762857834379247 TTRHLLHL 8 Unmodified _TTRHLLHL_ 0 0 0 REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF MSMS UPN47_class_I_Rep_1 2 495.79559326171875 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 69.722 1 73.09 72.59 73.59 3.3678 0 0 0 0.40738 1 16909 16909 0.79363 0 1 + 45876 22951 28971 28984 52806 52806 0.08184288636891779 TTRIDALLSP 10 Unmodified _TTRIDALLSP_ 0 0 0 L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|12|1|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|12|1|sense L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 543.8125 2 543.811313 1085.60807 0.33013 0.00017953 1.0986 0.00059743 1.4287 0.00077696 543.8118316285284 39.75 0.42588 39.75 39.405 39.831 0 54 40 3 0 0 0 0.56155 1 7646 7646 2.7352 0 1 195310 45877 13093 28972 28985 52807 52807 0.06869397160471635 TTRIKQAVF 9 Unmodified _TTRIKQAVF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 532.3171997070312 2 532.316566 1062.61858 0.48599 0.0002587 0.19006 0.00010117 0.67605 0.00035987 532.316512453709 107.85 0.1842 111.38 111.32 111.51 3.5345 60 20 4 0 0 0 0.36392 1 26103 26103 10.074 1.9184 1 30389000 45878 12495 28973 28986 52808 52808 0.0897742460556401 TTRIKQAVF 9 Unmodified _TTRIKQAVF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.316650390625 2 532.316566 1062.61858 0.43226 0.0002301 0.14996 7.9824E-05 0.58221 0.00030992 532.3165089039235 107.81 0.13218 111.49 111.42 111.56 3.6783 36 11 4 0 0 0 0.36392 1 25503 25503 10.074 1.9184 1 72215000 45879 12495 28973 28986 52809 52809 0.0897742460556401 TTRIKQAVF 9 Unmodified _TTRIKQAVF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 532.316566 1062.61858 0.47601 0.00025339 -1.2211 -0.00065 -0.74507 -0.00039661 532.315296066751 108.11 0.22676 111.74 111.57 111.8 3.6355 0.078756 -0.0014273 NaN 10.074 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 852640 45880 12495 28973 28986 0.0897742460556401 TTRIKQAVF 9 Unmodified _TTRIKQAVF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 532.316566 1062.61858 0.46023 0.00024499 -6.628 -0.0035282 -6.1678 -0.0032832 532.8181872763638 108.21 0.0839 111.75 111.68 111.76 3.5382 0.081107 -0.0071837 NaN 10.074 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1452700 45881 12495 28973 28986 0.0897742460556401 TTRIKQAVF 9 Unmodified _TTRIKQAVF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 532.316566 1062.61858 0.43226 0.0002301 0.14996 7.9824E-05 0.58221 0.00030992 532.3165089039235 107.81 0.13218 111.49 111.42 111.56 3.6783 -0.17808 3.2393E-05 NaN 10.074 36 11 4 NaN NaN NaN NaN 0 NaN NaN 0 72215000 45882 12495 28973 28986 0.0897742460556401 TTRIKQAVF 9 Unmodified _TTRIKQAVF_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|35|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 532.316566 1062.61858 0.51529 0.0002743 1.1626 0.00061888 1.6779 0.00089318 532.8186776261966 108 0.023033 111.68 111.67 111.69 3.6813 0.018221 0.0011105 NaN 10.074 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 591450 45883 12495 28973 28986 0.0897742460556401 TTRKKKKKKT 10 Unmodified _TTRKKKKKKT_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 623.9176025390625 2 623.919521 1245.82449 NaN NaN NaN NaN NaN NaN NaN 107.47 1 107.47 106.97 107.97 0 0 0 0 0.53105 1 26213 26213 1.4819 1.0812 1 + 45884 24414 28974 28987 52810 52810 0.21140997784823412 TTRKQSTKWK 10 Unmodified _TTRKQSTKWK_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 632.3617553710938 2 632.362036 1262.70952 0.71652 0.0004531 -0.97681 -0.0006177 -0.26029 -0.0001646 632.361620011034 96.205 0.32819 96.205 95.995 96.323 0 73 35 3 0 0 0 0.56078 1 23380 23380 3.2813 0.54611 1 671360 45885 9691 28975 28988 52811 52811 0.08867268583003352 TTRKQSTKWK 10 Unmodified _TTRKQSTKWK_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 632.362036 1262.70952 0.55314 0.00034979 -0.70896 -0.00044832 -0.15582 -9.8533E-05 632.3618058823175 92.342 0.41759 96.063 95.845 96.263 3.7209 0.038771 0.00014794 NaN 3.2813 97 58 2 NaN NaN NaN NaN 0 NaN NaN 0 435150 45886 9691 28975 28988 0.08867268583003352 TTRKQSTKWK 10 Unmodified _TTRKQSTKWK_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 632.362036 1262.70952 0.61724 0.00039032 -0.95595 -0.00060451 -0.33871 -0.00021419 632.3617000979035 92.395 0.43475 95.86 95.661 96.096 3.4652 -0.16415 -0.00016444 NaN 3.2813 139 63 3 NaN NaN NaN NaN 0 NaN NaN 0 400530 45887 9691 28975 28988 0.08867268583003352 TTRKQSTKWK 10 Unmodified _TTRKQSTKWK_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 632.362036 1262.70952 0.50845 0.00032152 -0.70228 -0.0004441 -0.19383 -0.00012257 632.3617976243825 92.525 0.45882 95.928 95.638 96.097 3.4034 -0.095946 0.00015639 NaN 3.2813 107 64 2 NaN NaN NaN NaN 0 NaN NaN 0 762670 45888 9691 28975 28988 0.08867268583003352 TTRKQSTKWK 10 Unmodified _TTRKQSTKWK_ 0 0 0 L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense L1MA4_dup4697|chr8:17257647-17262325:-|2.149161733039681|0.1327616554766964|4.02|151.0|126|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 632.362036 1262.70952 0.49674 0.00031412 -0.54224 -0.00034289 -0.045498 -2.8771E-05 632.3622097751178 92.302 0.13148 96.065 96.045 96.176 3.7629 0.040658 0.0003588 NaN 3.2813 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 321150 45889 9691 28975 28988 0.08867268583003352 TTRLIHRA 8 Unmodified _TTRLIHRA_ 0 0 0 ENST00000444472.5_1_9:101533219-101533276:-|nuORF ENST00000444472.5_1_9:101533219-101533276:-|nuORF ENST00000444472.5_1_9:101533219-101533276:-|nuORF MSMS UPN48_class_I_Rep_3 7 484.2940673828125 2 484.293425 966.572297 NaN NaN NaN NaN NaN NaN NaN 75.092 1 78.658 78.158 79.158 3.5659 0 0 0 0.40625 1 17620 17620 2.3027 0 1 45890 6782 28976 28989 52812 52812 0.08767404494130915 TTRLIVIHRKL 11 Unmodified _TTRLIVIHRKL_ 0 0 0 REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|27|2|sense REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|27|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.96783447265625 3 450.629506 1348.86669 0.037714 1.6995E-05 3.186 0.0014357 3.2237 0.0014527 450.62993936769345 53.819 0.3724 57.333 57.196 57.568 3.5143 37 25 2 0 0 0 0.6724 2 11317 11317;11354 1.2148 0.80657 1 143630 + 45891 27849 28977 28990 52813;52814 52813 0.20620973193194914 TTRLIVIHRKL 11 Unmodified _TTRLIVIHRKL_ 0 0 0 REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|27|2|sense REV__L1ME2_dup2858|chr3:114655552-114656734:-|3.120533607962189|0.1868282006511288|4.06|151.0|27|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 450.629506 1348.86669 0.037714 1.6995E-05 3.186 0.0014357 3.2237 0.0014527 450.62993936769345 53.819 0.3724 57.333 57.196 57.568 3.5143 0 0 NaN 1.2148 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 143630 + 45892 27849 28977 28990 0.20620973193194914 TTRLLLLLIHQ 11 Unmodified _TTRLLLLLIHQ_ 0 0 0 REV__MER70A_dup491|chr19:55222952-55223410:+|1.3551005500740303|0.2203066740118498|2.62|151.0|21|2|anti-sense REV__MER70A_dup491|chr19:55222952-55223410:+|1.3551005500740303|0.2203066740118498|2.62|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_1 5 440.95208740234375 3 440.950245 1319.82891 NaN NaN NaN NaN NaN NaN NaN 65.727 1 69.179 68.679 69.679 3.4516 0 0 0 0.38417 1 14974 14974 0.40827 0 1 + 45893 31552 28978 28991 52815 52815 0.18178462207765733 TTRLLRLD 8 Unmodified _TTRLLRLD_ 0 0 0 REV__ENST00000397820.4_1_19:10980065-10980326:+|nuORF REV__ENST00000397820.4_1_19:10980065-10980326:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 494.30096435546875 2 494.300916 986.587279 0.24816 0.00012267 -0.50902 -0.00025161 -0.26086 -0.00012894 494.3008862387278 110.99 0.14555 114.65 114.61 114.76 3.6654 29 17 2 0 0 0 0.82752 1 26351 26351 0.6015 0 1 147330 + 45894 22132 28979 28992 52816 52816 0.09344851571461277 TTRLLSNLQ 9 Unmodified _TTRLLSNLQ_ 0 0 0 REV__HAL1_dup20197|chr17:15994253-15995159:+|1.6506820049228246|0.4810041080714686|1.78|151.0|8|1|sense REV__HAL1_dup20197|chr17:15994253-15995159:+|1.6506820049228246|0.4810041080714686|1.78|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.3035888671875 2 523.303655 1044.59276 0.088594 4.6361E-05 -0.024845 -1.3002E-05 0.063749 3.336E-05 523.3035115597612 79.677 1.4533 83.033 82.138 83.591 3.3554 344 160 3 0 0 0 0.47197 1 19677 19677 3.5965 0 1 405110 + 45895 23391 28980 28993 52817 52817 0.07224530363282611 TTRLRPKA 8 Unmodified _TTRLRPKA_ 0 0 0 REV__L1MC5_dup8073|chr9:114374825-114375817:+|1.7169304951327629|0.120948923704716|3.83|151.0|3|1|sense REV__L1MC5_dup8073|chr9:114374825-114375817:+|1.7169304951327629|0.120948923704716|3.83|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 471.7949523925781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 26.532 1 29.88 29.38 30.38 3.3478 0 0 0 0.40604 1 3895 3895 2.5775 0 1 + 45896 27095 28981 28994 52818 52818 0.1039228863688777 TTRNIQLV 8 Unmodified _TTRNIQLV_ 0 0 0 REV__MLT2C1_dup2117|chr14:102673997-102674362:-|1.1425339456526389|0.0089280038172658|7.0|151.0|15|1|anti-sense REV__MLT2C1_dup2117|chr14:102673997-102674362:-|1.1425339456526389|0.0089280038172658|7.0|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_1 5 472.77093505859375 2 472.779816 943.545079 NaN NaN NaN NaN NaN NaN NaN 33.876 1 37.396 36.896 37.896 3.5201 0 0 0 0.40746 1 5345 5345 0.69038 0 1 + 45897 31833 28982 28995 52819 52819 0.07104876163100471 TTRNQPIQ 8 Unmodified _TTRNQPIQ_ 0 0 0 REV__ENST00000536093.5_3_12:27475116-27475341:+|nuORF REV__ENST00000536093.5_3_12:27475116-27475341:+|nuORF MSMS UPN48_class_I_Rep_3 7 479.258544921875 2 479.259248 956.503943 NaN NaN NaN NaN NaN NaN NaN 16.857 1 20.406 19.906 20.906 3.5486 0 0 0 0.40746 1 878 878 0.69038 0 1 + 45898 22891 28983 28996 52820 52820 0.023951151236246915 TTRQKVNK 8 Unmodified _TTRQKVNK_ 0 0 0 L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|148|3|sense L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|148|3|sense L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|148|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.791015625 2 487.790715 973.566878 0.21318 0.00010399 0.081592 3.98E-05 0.29477 0.00014379 487.79063311918725 87.974 0.63974 91.361 91.137 91.777 3.3873 90 70 2 0 0 0 0.82752 1 22028 22028 0.69038 0 1 207730 45899 14235 28984 28997 52821 52821 0.07903680911658739 TTRRKHRG 8 Unmodified _TTRRKHRG_ 0 0 0 L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|23|2|sense;L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|22|1|sense;L1M2b_dup68|chr5:94654978-94658428:-|1.1544085372851909|0.0346988862613896|5.06|151.0|37|1|sense;L1MA8_dup1918|chr3:142472940-142473540:-|2.0379620043249984|0.1084724842031417|4.23|151.0|12|2|sense;L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|49|2|sense L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|23|2|sense L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 506.30072021484375 2 506.299573 1010.58459 NaN NaN NaN NaN NaN NaN NaN 87.412 1 91.14 90.64 91.64 3.7279 0 0 0 0.40753 1 20798 20798 0.6015 0 1 45900 8746 28985 28998 52822 52822 0.07972440957178151 TTRTSDYE 8 Unmodified _TTRTSDYE_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MSMS UPN46_class_I_Rep_3 1 486.7164611816406 2 486.717079 971.419604 NaN NaN NaN NaN NaN NaN NaN 100.87 1 100.87 100.37 101.37 0 0 0 0 0.40738 1 24599 24599 0.79363 0 1 45901 4982 28986 28999 52823 52823 -0.06724880483807283 TTTGRLPLL 9 Unmodified _TTTGRLPLL_ 0 0 0 REV__ENST00000502890.5_1_5:180667315-180668686:-|nuORF REV__ENST00000502890.5_1_5:180667315-180668686:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 486.2994079589844 2 486.297842 970.581131 0.0984 4.7852E-05 1.2231 0.00059481 1.3215 0.00064267 486.2985981092368 55.174 0.44901 58.652 58.408 58.857 3.4785 39 26 2 0 0 0 0.12462 1 12554 12554 1.8442 0 1 61869 + 45902 22694 28987 29000 52824 52824 0.09466333339958055 TTTKLSKK 8 Unmodified _TTTKLSKK_ 0 0 0 REV__ENST00000485167.1_1_1:109318992-109319040:+|nuORF REV__ENST00000485167.1_1_1:109318992-109319040:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.78472900390625 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 65.727 1 69.085 68.585 69.585 3.3576 0 0 0 0.40798 1 15698 15698 0 0 1 + 45903 22598 28988 29001 52825 52825 0.09802644448632236 TTTKLSKK 8 Unmodified _TTTKLSKK_ 0 0 0 REV__ENST00000485167.1_1_1:109318992-109319040:+|nuORF REV__ENST00000485167.1_1_1:109318992-109319040:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.7847900390625 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 71.458 1 74.833 74.333 75.333 3.3751 0 0 0 0.40798 1 17424 17424 0 0 1 + 45904 22598 28988 29001 52826 52826 0.09802644448632236 TTTKRWLA 8 Unmodified _TTTKRWLA_ 0 0 0 ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 ENSG00000144580|ENST00000273064|CNOT9 ENSG00000144580|ENST00000273064|CNOT9 MSMS UPN47_class_I_Rep_1 2 488.78240966796875 2 488.782359 975.550165 NaN NaN NaN NaN NaN NaN NaN 41.769 1 45.449 44.949 45.949 3.6792 0 0 0 0.40625 1 8422 8422 2.3027 0.24298 1 45905 3361 28989 29002 52827 52827 0.06141180025701942 TTTLIRLK 8 Unmodified _TTTLIRLK_ 0 0 0 REV__MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|213|3|anti-sense REV__MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|213|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 474.2822265625 2 473.30821 944.601866 -0.8711 -0.0004123 -0.15067 -7.1314E-05 -1.0218 -0.00048361 473.30815005862723 13.167 0.90746 16.54 16.291 17.199 3.3734 232 105 4 0 0 0 0.82752 1 298 298 0.69038 0 1 644610 + 45906 31284 28990 29003 52828 52828 0.1273492371960856 TTTLSPPLL 9 Unmodified _TTTLSPPLL_ 0 0 0 Tigger1_dup9962|chr14:39414944-39415485:-|1.4526532699004613|0.0373387539637521|5.28|151.0|13|3|sense Tigger1_dup9962|chr14:39414944-39415485:-|1.4526532699004613|0.0373387539637521|5.28|151.0|13|3|sense Tigger1_dup9962|chr14:39414944-39415485:-|1.4526532699004613|0.0373387539637521|5.28|151.0|13|3|sense MSMS UPN48_class_I_Rep_3 7 471.77703857421875 2 471.778951 941.543348 NaN NaN NaN NaN NaN NaN NaN 82.656 1 86.363 85.863 86.863 3.7066 0 0 0 0.39428 1 19593 19593 2.0598 0 1 45907 33221 28991 29004 52829 52829 0.070238223544834 TTTQSHPQY 9 Unmodified _TTTQSHPQY_ 0 0 0 REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|81|3|sense REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|81|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 531.7462158203125 2 531.74617 1061.47779 -0.11327 -6.0229E-05 0.43123 0.00022931 0.31796 0.00016908 531.7463288221569 24.607 0.64672 28.356 28.115 28.762 3.7495 111 51 3 0 0 0 0.23293 1 3221 3221 18.146 0 1 216430 + 45908 29367 28992 29005 52830 52830 -0.050491988385147124 TTTQSHPQY 9 Unmodified _TTTQSHPQY_ 0 0 0 REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|81|3|sense REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|81|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 531.7461547851562 2 531.74617 1061.47779 -0.31225 -0.00016604 0.46774 0.00024872 0.1555 8.2684E-05 531.7463982125076 24.942 0.8587 28.293 27.994 28.853 3.3509 131 66 3 0 0 0 0.31407 1 3491 3491 13.042 13.042 1 233740 + 45909 29367 28992 29005 52831 52831 -0.050491988385147124 TTTSVSEST 9 Unmodified _TTTSVSEST_ 0 0 0 REV__ENST00000368126.2_1_6:131179278-131186801:-|nuORF REV__ENST00000368126.2_1_6:131179278-131186801:-|nuORF MSMS UPN46_class_I_Rep_3 1 456.7115478515625 2 456.711462 911.408371 NaN NaN NaN NaN NaN NaN NaN 115.96 1 115.96 115.46 116.46 0 0 0 0 0.4029 1 28691 28691 0 0 1 + 45910 17900 28993 29006 52832 52832 -0.050877025779186624 TTTSVSEST 9 Unmodified _TTTSVSEST_ 0 0 0 REV__ENST00000368126.2_1_6:131179278-131186801:-|nuORF REV__ENST00000368126.2_1_6:131179278-131186801:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 456.7115478515625 2 456.711462 911.408371 0.20314 9.2778E-05 0.01528 6.9786E-06 0.21842 9.9757E-05 456.71142022996486 115.95 0.045021 115.95 115.92 115.97 0 5 3 2 0 0 0 0.12551 1 28691 28691 0 0 1 118030 + 45911 17900 28993 29006 52833 52833 -0.050877025779186624 TTTTLLKLIK 10 Unmodified _TTTTLLKLIK_ 0 0 0 L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|33|2|sense L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|33|2|sense L1ME3B_dup1159|chr2:177386567-177388021:+|1.4061662966105697|0.0570196144253241|4.62|151.0|33|2|sense MSMS UPN46_class_I_Rep_3 1 566.3709716796875 2 566.371007 1130.72746 NaN NaN NaN NaN NaN NaN NaN 112.63 1 112.63 112.13 113.13 0 0 0 0 0.53105 1 27812 27812 0 0 1 45912 12692 28994 29007 52834 52834 0.16732590785159118 TTVASFILSF 10 Unmodified _TTVASFILSF_ 0 0 0 REV__L1MEb_dup1382|chr14:69447219-69447629:+|1.2876071586505955|0.0982515855170308|3.71|151.0|20|2|anti-sense REV__L1MEb_dup1382|chr14:69447219-69447629:+|1.2876071586505955|0.0982515855170308|3.71|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_1 5 543.2979736328125 2 543.297507 1084.58046 NaN NaN NaN NaN NaN NaN NaN 66.714 1 70.166 69.666 70.666 3.4516 0 0 0 0.53105 1 15276 15276 21.537 0 1 + 45913 28337 28995 29008 52835 52835 0.04155493900225338 TTVDESQVVTR 11 Unmodified _TTVDESQVVTR_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MSMS UPN48_class_I_Rep_2 6 617.8162231445312 2 617.817324 1233.62009 NaN NaN NaN NaN NaN NaN NaN 30.179 1 33.814 33.314 34.314 3.6351 0 0 0 0.37352 1 4379 4379 7.4771 4.7419 1 45914 4557 28996 29009 52836 52836 0.012629691129859566 TTVDESQVVTR 11 Unmodified _TTVDESQVVTR_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MSMS UPN48_class_I_Rep_3 7 617.8168334960938 2 617.817324 1233.62009 NaN NaN NaN NaN NaN NaN NaN 30.055 1 33.783 33.283 34.283 3.7286 0 0 0 0.38417 1 4289 4289 5.4027 3.5585 1 45915 4557 28996 29009 52837 52837 0.012629691129859566 TTVDFIDSEH 10 Unmodified _TTVDFIDSEH_ 0 0 0 Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|48|1|anti-sense Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|48|1|anti-sense Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|48|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 581.7615966796875 2 582.264393 1162.51423 0.51586 0.00030037 -1.6979 -0.00098861 -1.182 -0.00068825 582.2633572017467 52.227 0.21676 55.56 55.468 55.685 3.3332 20 17 2 0 0 0 0.84575 1 11639 11639 3.5965 0 1 51884 45916 33396 28997 29010 52838 52838 -0.06052366732478731 TTVEGLITR 9 Unmodified _TTVEGLITR_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS UPN48_class_I_Rep_1 5 495.2850646972656 2 495.284931 988.55531 0.18621 9.2226E-05 -0.15018 -7.438E-05 0.036031 1.7846E-05 495.2848032653474 42.627 0.68159 46.135 45.878 46.559 3.5079 90 53 2 0 0 0 0.086321 3 7920 7881;7920;7962 37.075 15.538 1 222610 45917 1914 28998 29011 52839;52840;52841 52840 0.06057439097662609 TTVEGLITR 9 Unmodified _TTVEGLITR_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MSMS UPN48_class_I_Rep_1 5 495.2850646972656 2 495.284931 988.55531 NaN NaN NaN NaN NaN NaN NaN 42.404 1 45.912 45.412 46.412 3.5079 0 0 0 0.29913 1 7839 7839 10.8 0.72558 1 45918 1914 28998 29011 52842 52842 0.06057439097662609 TTVEGLITR 9 Unmodified _TTVEGLITR_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS UPN48_class_I_Rep_2 6 495.2853698730469 2 495.284931 988.55531 0.21071 0.00010436 -0.23455 -0.00011617 -0.023846 -1.1811E-05 495.2848084220936 42.303 0.81734 46.061 45.728 46.546 3.7579 131 78 2 0 0 0 0.10956 5 7869 7757;7792;7830;7869;7910 32.037 13.246 1 229130 45919 1914 28998 29011 52843;52844;52845;52846;52847 52846 0.06057439097662609 TTVEGLITR 9 Unmodified _TTVEGLITR_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS UPN48_class_I_Rep_3 7 495.2848815917969 2 495.284931 988.55531 0.16589 8.2162E-05 -0.12752 -6.3161E-05 0.038364 1.9001E-05 495.2848996083583 42.509 0.86708 46.15 45.768 46.635 3.6415 115 71 2 0 0 0 0.026395 4 7778 7731;7778;7819;7860 59.368 24.967 1 179180 45920 1914 28998 29011 52848;52849;52850;52851 52849 0.06057439097662609 TTYPFYFIS 9 Unmodified _TTYPFYFIS_ 0 0 0 REV__PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|177|2|anti-sense REV__PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|177|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2780151367188 2 569.776408 1137.53826 0.39719 0.00022631 -0.80169 -0.00045679 -0.40451 -0.00023048 569.7756279113563 56.384 0.69375 59.556 59.266 59.959 3.1721 89 42 3 0 0 0 0.46869 1 13014 13014 3.9444 0 1 99351 + 45921 32149 28999 29012 52852 52852 -0.025004815081501874 TTYRRIKR 8 Unmodified _TTYRRIKR_ 0 0 0 nc|ENSG00000138639|Q8N264-2|ARHGAP24 nc|ENSG00000138639|Q8N264-2|ARHGAP24 nc|ENSG00000138639|Q8N264-2|ARHGAP24 MSMS UPN46_class_I_Rep_3 1 547.3324584960938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 76.37 1 76.37 75.87 76.87 0 0 0 0 0.40746 1 17811 17811 0.69038 0 1 45922 16694 29000 29013 52853 52853 0.10899051448268438 TTYRRIKR 8 Unmodified _TTYRRIKR_ 0 0 0 nc|ENSG00000138639|Q8N264-2|ARHGAP24 nc|ENSG00000138639|Q8N264-2|ARHGAP24 nc|ENSG00000138639|Q8N264-2|ARHGAP24 MSMS UPN47_class_I_Rep_3 4 547.3331909179688 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 78.062 1 81.344 80.844 81.844 3.2816 0 0 0 0.40746 1 19454 19454 0.69038 0.088878 1 45923 16694 29000 29013 52854 52854 0.10899051448268438 TVAEPSPVL 9 Unmodified _TVAEPSPVL_ 0 0 0 HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|142|2|anti-sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|142|2|anti-sense HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|142|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.7552490234375 2 456.755475 911.496398 0.048051 2.1948E-05 0.21456 9.8002E-05 0.26261 0.00011995 456.75539220533096 65.4 0.66633 68.756 68.562 69.228 3.3557 63 34 2 0 0 0 0.46434 1 15724 15724 4.3292 0 1 128800 45924 8340 29001 29014 52855 52855 0.03710962803347684 TVAQNERF 8 Unmodified _TVAQNERF_ 0 0 0 ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000198075|O75897-2|SULT1C4;ENSG00000198075|ENST00000272452|SULT1C4 ENSG00000198203|ENST00000251481|SULT1C2;ENSG00000197165|ENST00000335715|SULT1A2;nc|ENSG00000198075|O75897-2|SULT1C4 nc|ENSG00000198075|O75897-2|SULT1C4 MULTI-MSMS UPN47_class_I_Rep_1 2 482.7458801269531 2 482.745973 963.477394 -0.2825 -0.00013638 -0.0096664 -4.6664E-06 -0.29217 -0.00014104 482.7459506514582 38.825 0.58536 42.49 42.25 42.835 3.6652 62 37 2 0 0 0 0.82752 1 7587 7587 12.532 0 1 94006 45925 5419;5407;5312 29002 29015 52856 52856 -0.005805737677064826 TVCRFLKRL 9 Unmodified _TVCRFLKRL_ 0 0 0 L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|22|2|sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|22|2|sense L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 568.3428344726562 2 568.342061 1134.66957 NaN NaN NaN NaN NaN NaN NaN 21.653 1 21.653 21.153 22.153 0 0 0 0 0.4007 1 2454 2454 0.52476 0 1 45926 9568 29003 29016 52857 52857 0.10762050378752974 TVDDPYATFV 10 Unmodified _TVDDPYATFV_ 0 0 0 ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|3|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|4|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|2|intron ENST00000530945.1_1_11:65623404-65625570:-|nuORF ENST00000530945.1_1_11:65623404-65625570:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 564.2656860351562 2 564.266404 1126.51826 0.33949 0.00019156 -0.52496 -0.00029622 -0.18547 -0.00010466 564.2660265133993 67.364 0.39083 70.725 70.461 70.852 3.3611 53 32 2 0 0 0 0.36464 1 16189 16189 22.736 6.8891 1 84409 45927 4589 29004 29017 52858 52858 -0.039942772387803416 TVDDPYATFV 10 Unmodified _TVDDPYATFV_ 0 0 0 ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|3|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|4|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|2|intron ENST00000530945.1_1_11:65623404-65625570:-|nuORF ENST00000530945.1_1_11:65623404-65625570:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 564.2666625976562 2 564.266404 1126.51826 0.38407 0.00021672 -0.22458 -0.00012672 0.15949 8.9997E-05 564.2660773418352 67.492 0.51456 70.755 70.499 71.014 3.2636 70 42 2 0 0 0 0.30128 2 16265 16265;16305 32.786 18.88 1 84564 45928 4589 29004 29017 52859;52860 52859 -0.039942772387803416 TVDDPYATFV 10 Unmodified _TVDDPYATFV_ 0 0 0 ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|3|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|4|intron;ENSG00000172757.13,CFL1,chr11,-,I4.1,65857869,65858096|45|10.61|2|intron ENST00000530945.1_1_11:65623404-65625570:-|nuORF ENST00000530945.1_1_11:65623404-65625570:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 564.2666625976562 2 564.266404 1126.51826 0.43891 0.00024766 -0.30914 -0.00017444 0.12976 7.3222E-05 564.2660544719344 67.508 0.52908 70.7 70.475 71.004 3.1914 60 37 2 0 0 0 0.29514 2 16359 16318;16359 34.402 15.145 1 118650 45929 4589 29004 29017 52861;52862 52862 -0.039942772387803416 TVDEHVWFY 9 Unmodified _TVDEHVWFY_ 0 0 0 nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 MULTI-MSMS UPN47_class_I_Rep_1 2 598.275634765625 2 598.274564 1194.53457 0.40546 0.00024257 0.43288 0.00025898 0.83833 0.00050155 598.2745034997229 62.284 0.65274 65.652 65.372 66.025 3.3681 67 41 2 0 0 0 0.35081 1 14744 14744 10.824 3.5347 1 130580 45930 994 29005 29018 52863 52863 -0.054911512819899144 TVDEHVWFY 9 Unmodified _TVDEHVWFY_ 0 0 0 nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 MULTI-SECPEP UPN47_class_I_Rep_2 3 598.80126953125 2 598.274564 1194.53457 0.43609 0.0002609 0.43614 0.00026093 0.87223 0.00052183 598.27470071313 62.648 0.51764 65.904 65.622 66.14 3.2558 55 30 2 0 0 0 0.10699 1 14763 14763 15.847 3.3156 1 83591 45931 994 29005 29018 52864 52864 -0.054911512819899144 TVDKHSDEY 9 Unmodified _TVDKHSDEY_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS UPN47_class_I_Rep_2 3 547.2434692382812 2 547.24346 1092.47237 0.024734 1.3535E-05 -0.27511 -0.00015055 -0.25038 -0.00013702 547.2432637064809 13.756 0.21743 17.143 17.065 17.283 3.3871 40 25 3 0 0 0 0.47197 1 405 405 3.5965 0 1 35001 45932 4566 29006 29019 52865 52865 -0.07016922420984884 TVDLTVHQL 9 Unmodified _TVDLTVHQL_ 0 0 0 ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B MULTI-MSMS UPN47_class_I_Rep_2 3 513.2849731445312 2 513.284931 1024.55531 0.18419 9.4539E-05 0.40754 0.00020919 0.59173 0.00030373 513.2850916762794 57.109 0.7672 60.401 59.944 60.712 3.2912 93 66 3 0 0 0 0.16559 1 13180 13180 24.021 0 1 425540 45933 2766 29007 29020 52866 52866 0.04401439097682669 TVDLTVHQL 9 Unmodified _TVDLTVHQL_ 0 0 0 ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B MSMS UPN47_class_I_Rep_2 3 513.2850341796875 2 513.284931 1024.55531 NaN NaN NaN NaN NaN NaN NaN 57.663 1 60.954 60.454 61.454 3.2912 0 0 0 0.32573 1 13293 13293 9.3831 0 1 45934 2766 29007 29020 52867 52867 0.04401439097682669 TVDLTVHQL 9 Unmodified _TVDLTVHQL_ 0 0 0 ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B MULTI-MSMS UPN47_class_I_Rep_3 4 513.2847900390625 2 513.284931 1024.55531 0.19465 9.9911E-05 0.3178 0.00016312 0.51245 0.00026303 513.2849679395634 57.45 0.25387 60.618 60.555 60.809 3.1681 45 20 3 0 0 0 0.11683 1 13296 13296 30.637 0 1 188570 45935 2766 29007 29020 52868 52868 0.04401439097682669 TVDLTVHQL 9 Unmodified _TVDLTVHQL_ 0 0 0 ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B ENSG00000132622|ENST00000254963|HSPA12B MULTI-MATCH UPN48_class_I_Rep_3 7 2 513.284931 1024.55531 0.23171 0.00011893 -0.92484 -0.00047471 -0.69313 -0.00035577 513.2841901974905 57.027 0.03614 60.569 60.542 60.578 3.5427 -0.02421 -0.0012089 NaN 30.637 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 20248 45936 2766 29007 29020 0.04401439097682669 TVDSITPLH 9 Unmodified _TVDSITPLH_ 0 0 0 ENST00000479033.1_1_10:5691052-5708523:-|nuORF;nc|ENSG00000196372|Q8WXK3-2|ASB13;ENSG00000196372|ENST00000357700|ASB13 ENST00000479033.1_1_10:5691052-5708523:-|nuORF ENST00000479033.1_1_10:5691052-5708523:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 491.7640686035156 2 491.763832 981.513111 0.1539 7.5681E-05 0.033295 1.6373E-05 0.18719 9.2054E-05 491.76377622544584 56.638 0.56681 59.81 59.461 60.028 3.1721 51 33 2 0 0 0 0.18929 1 13099 13099 21.747 1.293 1 210370 45937 5299 29008 29021 52869 52869 0.02161463689287757 TVEEVAQSL 9 Unmodified _TVEEVAQSL_ 0 0 0 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 MULTI-MSMS UPN47_class_I_Rep_3 4 488.7540283203125 2 488.253297 974.492041 0.071424 3.4873E-05 -0.43657 -0.00021316 -0.36515 -0.00017828 488.2530615072733 58.195 0.51848 61.361 61.136 61.655 3.1658 38 30 2 0 0 0 0.31407 1 13548 13548 13.042 0 1 53912 + 45938 18486 29009 29022 52870 52870 0.0037745358977190335 TVEGVNIVL 9 Unmodified _TVEGVNIVL_ 0 0 0 REV__ENSG00000172716|ENST00000685675|SLFN11 REV__ENSG00000172716|ENST00000685675|SLFN11 MULTI-MSMS UPN47_class_I_Rep_3 4 472.27667236328125 2 472.276575 942.538597 -0.25405 -0.00011998 -0.36592 -0.00017282 -0.61997 -0.0002928 472.2761139236807 44.46 0.80145 47.704 47.288 48.089 3.2441 85 48 3 0 0 0 0.39745 1 9390 9390 8.1555 2.4237 1 195650 + 45939 20456 29010 29023 52871 52871 0.06502938211713172 TVEIEIGFL 9 Unmodified _TVEIEIGFL_ 0 0 0 REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10 MULTI-SECPEP UPN47_class_I_Rep_3 4 510.27398681640625 2 510.784233 1019.55391 0.30205 0.00015428 0.24501 0.00012515 0.54705 0.00027943 510.78428748507804 84.023 0.20148 87.373 87.235 87.437 3.35 29 23 2 0 0 0 0.070541 1 21075 21075 21.747 0 1 74466 + 45940 21368 29011 29024 52872 52872 0.04491805008922256 TVETYLLMK 9 Unmodified _TVETYLLMK_ 0 0 0 REV__ENST00000491154.1_1_X:153666748-153668487:+|nuORF REV__ENST00000491154.1_1_X:153666748-153668487:+|nuORF MSMS UPN47_class_I_Rep_3 4 549.3012084960938 2 549.299193 1096.58383 NaN NaN NaN NaN NaN NaN NaN 99.591 1 103.04 102.54 103.54 3.4483 0 0 0 0.38478 1 24619 24619 4.3292 0 1 + 45941 17705 29012 29025 52873 52873 0.03940420682579315 TVFAVVELI 9 Unmodified _TVFAVVELI_ 0 0 0 L1PA8_dup5847|chr11:78482232-78485415:+|1.836215269798884|0.0871053429580578|4.4|149.0|132|2|anti-sense L1PA8_dup5847|chr11:78482232-78485415:+|1.836215269798884|0.0871053429580578|4.4|149.0|132|2|anti-sense L1PA8_dup5847|chr11:78482232-78485415:+|1.836215269798884|0.0871053429580578|4.4|149.0|132|2|anti-sense MSMS UPN47_class_I_Rep_1 2 495.79608154296875 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 61.356 1 64.737 64.237 65.237 3.3815 0 0 0 0.36505 1 14383 14383 7.2892 2.5332 1 45942 14952 29013 29026 52874 52874 0.0845269925117691 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN46_class_I_Rep_3 1 425.9228210449219 3 425.922578 1274.7459 0.063023 2.6843E-05 0.4775 0.00020338 0.54052 0.00023022 425.92269957710687 50.135 0.60539 50.135 49.705 50.31 0 162 66 4 0 0 0 0.14207 1 10583 10583 40.317 12.136 1 3157300 45943 1917;5521 29014 29027 52875 52875 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MSMS UPN46_class_I_Rep_3 1 425.9229736328125 3 425.922578 1274.7459 NaN NaN NaN NaN NaN NaN NaN 50.293 1 50.293 49.793 50.793 0 0 0 0 0.018811 1 10622 10622 27.289 12.451 1 45944 1917;5521 29014 29027 52876 52876 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN48_class_I_Rep_1 5 425.922607421875 3 425.922578 1274.7459 -0.094372 -4.0195E-05 0.037764 1.6085E-05 -0.056608 -2.4111E-05 425.9226623194399 44.471 1.675 47.984 47.416 49.091 3.5132 399 122 5 0 0 0 0.13262 4 8435 8391;8435;8475;8513 54.259 24.978 1 5084500 45945 1917;5521 29014 29027 52877;52878;52879;52880 52878 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN48_class_I_Rep_1 5 638.3793334960938 2 638.380229 1274.7459 0.44105 0.00028156 -0.24618 -0.00015716 0.19488 0.0001244 638.3800478661917 44.478 0.60807 47.991 47.643 48.251 3.5132 72 42 2 0 0 0 0.63951 1 8428 8428 4.1895 1.9067 1 132430 45946 1917;5521 29014 29027 52881 52881 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN48_class_I_Rep_2 6 425.9227294921875 3 425.922578 1274.7459 0.0042824 1.824E-06 -0.068202 -2.9049E-05 -0.06392 -2.7225E-05 425.9226471639759 44.2 1.6656 47.961 47.313 48.979 3.7617 400 123 4 0 0 0 0.023596 4 8343 8304;8343;8382;8423 63.164 29.342 1 4663500 45947 1917;5521 29014 29027 52882;52883;52884;52885 52883 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN48_class_I_Rep_2 6 638.380615234375 2 638.380229 1274.7459 0.42078 0.00026862 -0.16739 -0.00010686 0.25339 0.00016176 638.3801626788667 44.16 0.6373 47.921 47.634 48.271 3.7617 72 46 2 0 0 0 0.61292 1 8380 8380 4.897 0.36815 1 144520 45948 1917;5521 29014 29027 52886 52886 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN48_class_I_Rep_3 7 425.922607421875 3 425.922578 1274.7459 0.038845 1.6545E-05 -0.093283 -3.9731E-05 -0.054439 -2.3187E-05 425.92262434723284 44.25 1.6391 47.887 47.392 49.031 3.6372 381 111 5 0 0 0 0.00090608 5 8308 8269;8308;8349;8391;8431 64.86 31.039 1 5536200 45949 1917;5521 29014 29027 52887;52888;52889;52890;52891 52888 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS UPN48_class_I_Rep_3 7 638.3806762695312 2 638.380229 1274.7459 0.54724 0.00034935 -0.23658 -0.00015103 0.31066 0.00019832 638.3800254190818 44.382 0.69888 48.02 47.644 48.343 3.6372 79 48 2 0 0 0 0.65821 2 8328 8328;8369 2.4985 2.4985 1 185170 45950 1917;5521 29014 29027 52892;52893 52892 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MATCH UPN48_class_I_Rep_1 5 3 425.922578 1274.7459 -0.1038 -4.4212E-05 -0.28738 -0.0001224 -0.39118 -0.00016661 426.25650712482076 46.539 0.09108 50.058 49.986 50.077 3.5192 -0.01765 -0.00092989 NaN 40.317 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 27707 45951 1917;5521 29014 29027 0.11952145479745013 TVFDAKRLIGR 11 Unmodified _TVFDAKRLIGR_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENST00000442006.2_1_1:39174637-39175513:+|nuORF;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L ENSG00000109971|ENST00000534624|HSPA8 MULTI-MATCH UPN48_class_I_Rep_3 7 3 425.922578 1274.7459 0.041752 1.7783E-05 -0.050024 -2.1306E-05 -0.0082723 -3.5233E-06 425.92264978792724 46.397 0.062523 50.034 49.978 50.041 3.6369 -0.041314 -0.0006266 NaN 40.317 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 44923 45952 1917;5521 29014 29027 0.11952145479745013 TVFEGRIYV 9 Unmodified _TVFEGRIYV_ 0 0 0 nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18 nc|ENSG00000114648|O94889-2|KLHL18 nc|ENSG00000114648|O94889-2|KLHL18 MULTI-MSMS UPN47_class_I_Rep_1 2 542.2958374023438 2 542.295299 1082.57605 0.36165 0.00019612 -1.3196 -0.00071559 -0.95791 -0.00051947 542.2948104538026 54.416 0.46355 57.917 57.769 58.232 3.5014 30 22 2 0 0 0 0.279 1 12287 12287 15.248 5.1746 1 67087 45953 2085 29015 29028 52894 52894 0.038060294773458736 TVFEGRIYV 9 Unmodified _TVFEGRIYV_ 0 0 0 nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18 nc|ENSG00000114648|O94889-2|KLHL18 nc|ENSG00000114648|O94889-2|KLHL18 MULTI-MSMS UPN47_class_I_Rep_2 3 542.2968139648438 2 542.295299 1082.57605 0.47829 0.00025938 0.35966 0.00019504 0.83795 0.00045442 542.2955930937424 54.771 0.45107 58.089 57.851 58.302 3.3187 26 21 2 0 0 0 0.32682 1 12395 12395 12.241 1.4167 1 65261 45954 2085 29015 29028 52895 52895 0.038060294773458736 TVFESRNLR 9 Unmodified _TVFESRNLR_ 0 0 0 ENST00000485191.5_1_19:1277107-1277296:+|nuORF;ENSG00000228300|ENST00000409293|FAM174C ENST00000485191.5_1_19:1277107-1277296:+|nuORF ENST00000485191.5_1_19:1277107-1277296:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 561.3063354492188 2 561.306729 1120.59891 0.51355 0.00028826 -0.56675 -0.00031812 -0.053195 -2.9859E-05 561.3063876238544 28.952 0.43006 32.583 32.321 32.751 3.6316 73 43 2 0 0 0 0.46869 1 4068 4068 3.9444 0.66309 1 62553 45955 5671 29016 29029 52896 52896 0.04343048594796528 TVFESRNLR 9 Unmodified _TVFESRNLR_ 0 0 0 ENST00000485191.5_1_19:1277107-1277296:+|nuORF;ENSG00000228300|ENST00000409293|FAM174C ENST00000485191.5_1_19:1277107-1277296:+|nuORF ENST00000485191.5_1_19:1277107-1277296:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 561.808837890625 2 561.306729 1120.59891 0.3185 0.00017878 -0.43461 -0.00024395 -0.11611 -6.5172E-05 561.3064886336167 28.685 0.69286 32.427 32.168 32.861 3.7424 128 76 2 0 0 0 0.43153 2 4003 3934;4003 6.2058 2.9245 1 97318 45956 5671 29016 29029 52897;52898 52898 0.04343048594796528 TVFICMIHY 9 Unmodified _TVFICMIHY_ 0 0 0 REV__L1PA3_dup10156|chr18:49215769-49223192:+|1.7542418894768046|0.1447850574881619|3.6|151.0|311|2|anti-sense REV__L1PA3_dup10156|chr18:49215769-49223192:+|1.7542418894768046|0.1447850574881619|3.6|151.0|311|2|anti-sense MSMS UPN47_class_I_Rep_3 4 563.7745361328125 2 563.774831 1125.53511 NaN NaN NaN NaN NaN NaN NaN 46.661 1 49.905 49.405 50.405 3.2439 0 0 0 0.3264 1 10003 10003 9.3474 4.1168 1 + 45957 29501 29017 29030 52899 52899 -0.022637711581410258 TVFLKLLTS 9 Unmodified _TVFLKLLTS_ 0 0 0 ENST00000367139.7_1_1:205738902-205738974:-|nuORF ENST00000367139.7_1_1:205738902-205738974:-|nuORF ENST00000367139.7_1_1:205738902-205738974:-|nuORF MSMS UPN48_class_I_Rep_2 6 511.3179016113281 2 511.318243 1020.62193 NaN NaN NaN NaN NaN NaN NaN 72.638 1 76.203 75.703 76.703 3.5645 0 0 0 0.38784 1 17013 17013 3.5965 0 1 45958 6344 29018 29031 52900 52900 0.11244674659553766 TVFLVLSK 8 Unmodified _TVFLVLSK_ 0 0 0 L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|22|2|anti-sense L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|22|2|anti-sense L1MCa_dup5935|chr13:112802374-112802903:+|1.4553209896969832|0.0437461452911728|5.06|151.0|22|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7847595214844 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 58.506 1 61.672 61.172 62.172 3.1658 0 0 0 0.40404 1 13599 13599 5.2307 0 1 45959 11833 29019 29032 52901 52901 0.1020473394231658 TVFNAHEPFRR 11 Unmodified _TVFNAHEPFRR_ 0 0 0 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 MULTI-MSMS UPN48_class_I_Rep_1 5 458.5736083984375 3 458.573949 1372.70002 0.087635 4.0187E-05 -0.25647 -0.00011761 -0.16884 -7.7424E-05 458.5737895433758 34.649 0.73763 38.164 37.704 38.442 3.5144 121 75 2 0 0 0 0.58817 2 5579 5534;5579 5.5233 1.4067 1 226700 45960 5515 29020 29033 52902;52903 52903 0.028575002974775998 TVFNAHEPFRR 11 Unmodified _TVFNAHEPFRR_ 0 0 0 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 MULTI-MSMS UPN48_class_I_Rep_2 6 458.57391357421875 3 458.573949 1372.70002 0.15958 7.3179E-05 -0.14093 -6.4628E-05 0.018646 8.5508E-06 458.573770382537 34.432 0.78106 38.105 37.678 38.459 3.6735 144 86 3 0 0 0 0.64331 1 5542 5542 3.8459 0.52627 1 169440 45961 5515 29020 29033 52904 52904 0.028575002974775998 TVFQCDCCTC 10 Unmodified _TVFQCDCCTC_ 0 0 0 L1MB7_dup4728|chr3:136161103-136161787:+|1.360485839958725|0.0105869955161122|7.01|151.0|47|3|anti-sense L1MB7_dup4728|chr3:136161103-136161787:+|1.360485839958725|0.0105869955161122|7.01|151.0|47|3|anti-sense L1MB7_dup4728|chr3:136161103-136161787:+|1.360485839958725|0.0105869955161122|7.01|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 561.6885375976562 2 561.68978 1121.36501 NaN NaN NaN NaN NaN NaN NaN 89.546 1 93.375 92.875 93.875 3.8293 0 0 0 0.53105 1 21260 21260 0.40072 0 1 45962 10839 29021 29034 52905 52905 -0.19081998214392115 TVFSPTLPAAR 11 Unmodified _TVFSPTLPAAR_ 0 0 0 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN48_class_I_Rep_1 5 580.8302612304688 2 580.327131 1158.63971 0.41497 0.00024082 0.087089 5.054E-05 0.50206 0.00029136 580.3271376486033 51.048 0.66368 54.572 54.253 54.916 3.5246 68 40 2 0 0 0 0.16237 4 10501 10450;10496;10501;10550 43.982 21.324 1 219370 45963 1770 29022 29035 52906;52907;52908;52909 52908 0.0667338991440829 TVFSPTLPAAR 11 Unmodified _TVFSPTLPAAR_ 0 0 0 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN48_class_I_Rep_2 6 580.3265991210938 2 580.327131 1158.63971 0.46884 0.00027208 0.065249 3.7866E-05 0.53409 0.00030995 580.3271378521896 50.905 0.68859 54.573 54.28 54.968 3.6679 62 40 2 0 0 0 0.28412 6 10489 10389;10415;10452;10489;10494;10540 32.037 14.595 1 196310 45964 1770 29022 29035 52910;52911;52912;52913;52914;52915 52913 0.0667338991440829 TVFSPTLPAAR 11 Unmodified _TVFSPTLPAAR_ 0 0 0 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS UPN48_class_I_Rep_3 7 580.8289794921875 2 580.327131 1158.63971 0.36982 0.00021462 0.13094 7.5987E-05 0.50076 0.0002906 580.3272503421249 51.064 0.6228 54.675 54.397 55.02 3.6105 70 40 2 0 0 0 0.28117 6 10361 10361;10373;10412;10454;10484;10496 33.445 15.072 1 186240 45965 1770 29022 29035 52916;52917;52918;52919;52920;52921 52916 0.0667338991440829 TVFVGLSRTK 10 Unmodified _TVFVGLSRTK_ 0 0 0 REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|169|3|anti-sense REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|169|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 554.3294677734375 2 554.329673 1106.64479 0.52606 0.00029161 -0.022013 -1.2202E-05 0.50404 0.00027941 554.3295953662268 107.86 0.50998 111.53 111.46 111.97 3.6721 71 41 5 0 0 0 0.4965 1 26449 26449 12.241 0 1 20684000 + 45966 26641 29023 29036 52922 52922 0.09573693777042536 TVFVGLSRTK 10 Unmodified _TVFVGLSRTK_ 0 0 0 REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|169|3|anti-sense REV__L1MC2_dup2002|chr5:131687494-131689939:+|5.313334077534276|0.1429391314764405|5.22|151.0|169|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.329833984375 2 554.329673 1106.64479 0.39308 0.0002179 -0.068114 -3.7758E-05 0.32497 0.00018014 554.3294443359423 107.84 0.20279 111.53 111.45 111.66 3.6813 63 20 4 0 0 0 0.53004 1 25462 25462 8.1555 0 1 30999000 + 45967 26641 29023 29036 52923 52923 0.09573693777042536 TVGALLASEL 10 Unmodified _TVGALLASEL_ 0 0 0 ENSG00000148057|ENST00000376419|IDNK;nc|ENSG00000148057|Q5T6J7-2|IDNK ENSG00000148057|ENST00000376419|IDNK ENSG00000148057|ENST00000376419|IDNK MULTI-MSMS UPN48_class_I_Rep_3 7 487.2828369140625 2 487.281857 972.549162 0.099117 4.8298E-05 0.087967 4.2865E-05 0.18708 9.1163E-05 487.281779197832 52.702 0.77255 56.3 55.932 56.705 3.5979 137 55 3 0 0 0 0.54822 1 11026 11026 5.7319 0.83484 1 934850 45968 3490 29024 29037 52924 52924 0.061789208661252815 TVGAPLYAAF 10 Unmodified _TVGAPLYAAF_ 0 0 0 nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC nc|ENSG00000290691|A6NGW2|STRCP1 nc|ENSG00000290691|A6NGW2|STRCP1 MULTI-MSMS UPN48_class_I_Rep_3 7 505.2715148925781 2 505.271293 1008.52803 0.30544 0.00015433 -0.20726 -0.00010472 0.098176 4.9605E-05 505.2712899519772 79.813 0.27806 83.455 83.211 83.489 3.6423 50 37 2 0 0 0 0.46161 1 18913 18913 14.838 0 1 706370 45969 5717 29025 29038 52925 52925 0.02410955557274974 TVGRGRALL 9 Unmodified _TVGRGRALL_ 0 0 0 ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-2|TTC39C ENSG00000168234|ENST00000317571|TTC39C ENSG00000168234|ENST00000317571|TTC39C MSMS UPN47_class_I_Rep_1 2 471.7951965332031 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 46.118 1 49.818 49.318 50.318 3.6999 0 0 0 0.38478 1 9752 9752 4.3292 0 1 45970 4359 29026 29039 52926 52926 0.10392288636899139 TVGRRRKKRRR 11 Unmodified _TVGRRRKKRRR_ 0 0 0 ENST00000235307.6_1_1:184356289-184446531:+|nuORF ENST00000235307.6_1_1:184356289-184446531:+|nuORF ENST00000235307.6_1_1:184356289-184446531:+|nuORF MSMS UPN47_class_I_Rep_1 2 490.322265625 3 490.322181 1467.94471 NaN NaN NaN NaN NaN NaN NaN 59.338 1 62.755 62.255 63.255 3.4171 0 0 0 0.38417 1 13771 13771 0 0 1 45971 5892 29027 29040 52927 52927 0.22945843621801032 TVGRRRKKRRR 11 Unmodified _TVGRRRKKRRR_ 0 0 0 ENST00000235307.6_1_1:184356289-184446531:+|nuORF ENST00000235307.6_1_1:184356289-184446531:+|nuORF ENST00000235307.6_1_1:184356289-184446531:+|nuORF MSMS UPN47_class_I_Rep_2 3 490.3221130371094 3 490.322181 1467.94471 NaN NaN NaN NaN NaN NaN NaN 59.56 1 62.833 62.333 63.333 3.2731 0 0 0 0.38417 1 13873 13873 0 0 1 45972 5892 29027 29040 52928 52928 0.22945843621801032 TVGTRRQL 8 Unmodified _TVGTRRQL_ 0 0 0 nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98 nc|ENSG00000110713|P52948-2|NUP98 nc|ENSG00000110713|P52948-2|NUP98 MULTI-SECPEP UPN46_class_I_Rep_3 1 465.77801513671875 2 465.777608 929.540663 0.19847 9.2441E-05 -0.29904 -0.00013928 -0.10057 -4.6843E-05 465.77743684841306 76.023 0.63739 76.023 75.588 76.226 0 91 65 2 0 0 0 0.72333 1 17616 17616 5.2307 0 1 134420 45973 1949 29028 29041 52929 52929 0.07307411740168845 TVHCHFYLT 9 Unmodified _TVHCHFYLT_ 0 0 0 Tigger2_dup542|chr3:47302505-47303614:-|1.3261554726325273|0.0191645865490326|6.11|151.0|51|3|anti-sense Tigger2_dup542|chr3:47302505-47303614:-|1.3261554726325273|0.0191645865490326|6.11|151.0|51|3|anti-sense Tigger2_dup542|chr3:47302505-47303614:-|1.3261554726325273|0.0191645865490326|6.11|151.0|51|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 560.7656860351562 2 560.765852 1119.51715 0.3355 0.00018814 -0.092029 -5.1607E-05 0.24347 0.00013653 560.7656608263902 41.764 0.054256 45.41 45.386 45.441 3.6458 8 5 2 0 0 0 0.48846 1 7580 7580 1.8442 0.19162 1 53609 45974 33321 29029 29042 52930 52930 -0.037827700886509774 TVHIKWIR 8 Unmodified _TVHIKWIR_ 0 0 0 REV__Charlie1a_dup1052|chr2:239088752-239089299:+|1.356324635675553|0.1203891836465046|3.49|151.0|9|2|sense REV__Charlie1a_dup1052|chr2:239088752-239089299:+|1.356324635675553|0.1203891836465046|3.49|151.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8215942382812 2 526.821818 1051.62908 -0.013479 -7.101E-06 -0.23132 -0.00012187 -0.2448 -0.00012897 526.8215779884122 26.13 0.097965 26.13 26.114 26.212 0 9 4 4 0 0 0 0.82752 1 3707 3707 0.69038 0 1 424980 + 45975 17295 29030 29043 52931 52931 0.10533452050640335 TVHLESCRYS 10 Unmodified _TVHLESCRYS_ 0 0 0 THE1B-int_dup1564|chr5:81566605-81568148:+|1.309431008797216|0.0324140961968482|5.34|151.0|25|2|sense THE1B-int_dup1564|chr5:81566605-81568148:+|1.309431008797216|0.0324140961968482|5.34|151.0|25|2|sense THE1B-int_dup1564|chr5:81566605-81568148:+|1.309431008797216|0.0324140961968482|5.34|151.0|25|2|sense MSMS UPN47_class_I_Rep_3 4 597.7809448242188 2 597.78223 1193.54991 NaN NaN NaN NaN NaN NaN NaN 36.474 1 39.728 39.228 40.228 3.2547 0 0 0 0.53105 1 6881 6881 2.7352 1.0826 1 45976 32893 29031 29044 52932 52932 -0.039126077564560546 TVHLLRFP 8 Unmodified _TVHLLRFP_ 0 0 0 REV__ENSG00000152207|ENST00000682523|CYSLTR2 REV__ENSG00000152207|ENST00000682523|CYSLTR2 MSMS UPN46_class_I_Rep_3 1 491.7960205078125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.508 1 49.508 49.008 50.008 0 0 0 0 0.40604 1 10397 10397 2.5775 0 1 + 45977 19672 29032 29045 52933 52933 0.08446074267999393 TVHPFRLL 8 Unmodified _TVHPFRLL_ 0 0 0 REV__ENSG00000068305.17,MEF2A,chr15,+,I7.1,99645832,99657412|34|13.34|1|intron REV__ENSG00000068305.17,MEF2A,chr15,+,I7.1,99645832,99657412|34|13.34|1|intron MSMS UPN46_class_I_Rep_3 1 491.7958679199219 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 61.671 1 61.671 61.171 62.171 0 0 0 0 0.40625 1 13739 13739 2.3027 0 1 + 45978 17777 29033 29046 52934 52934 0.08446074267999393 TVIDSQTHY 9 Unmodified _TVIDSQTHY_ 0 0 0 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 MULTI-MSMS UPN46_class_I_Rep_3 1 532.2564697265625 2 532.256371 1062.49819 0.19508 0.00010383 -0.058966 -3.1385E-05 0.13611 7.2448E-05 532.2562295621807 35.336 0.57492 35.336 35.1 35.675 0 64 41 2 0 0 0 0.23293 1 6436 6436 18.146 1.0335 1 134880 45979 4250 29034 29047 52935 52935 -0.030560281787074928 TVILKRKTA 9 Unmodified _TVILKRKTA_ 0 0 0 ENSG00000163810|ENST00000296125|TGM4 ENSG00000163810|ENST00000296125|TGM4 ENSG00000163810|ENST00000296125|TGM4 MSMS UPN46_class_I_Rep_3 1 515.3428955078125 2 515.342584 1028.67061 NaN NaN NaN NaN NaN NaN NaN 99.095 1 99.095 98.595 99.595 0 0 0 0 0.4007 1 24134 24134 0.52476 0 1 45980 4044 29035 29048 52936 52936 0.15742588019315917 TVILSEVTI 9 Unmodified _TVILSEVTI_ 0 0 0 L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|55|1|sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|55|1|sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|55|1|sense MSMS UPN47_class_I_Rep_3 4 487.78369140625 2 487.792058 973.569563 NaN NaN NaN NaN NaN NaN NaN 63.482 1 66.652 66.152 67.152 3.1698 0 0 0 0.38639 1 15119 15119 3.9444 1.6417 1 45981 15053 29036 29049 52937 52937 0.08172091525955238 TVIQNIYF 8 Unmodified _TVIQNIYF_ 0 0 0 L1ME1_dup11427|chr6:37978175-37978724:-|1.100945316109665|0.0073249784408317|7.23|151.0|30|1|anti-sense L1ME1_dup11427|chr6:37978175-37978724:-|1.100945316109665|0.0073249784408317|7.23|151.0|30|1|anti-sense L1ME1_dup11427|chr6:37978175-37978724:-|1.100945316109665|0.0073249784408317|7.23|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.2705993652344 2 499.271293 996.528032 NaN NaN NaN NaN NaN NaN NaN 56.81 1 60.267 59.767 60.767 3.4572 0 0 0 0.36705 1 13003 13003 18.135 0 1 45982 12180 29037 29050 52938 52938 0.029629555572796562 TVISPGSHVT 10 Unmodified _TVISPGSHVT_ 0 0 0 nc|ENSG00000167618|Q6ISS4-2|LAIR2;ENSG00000167618|ENST00000301202|LAIR2 nc|ENSG00000167618|Q6ISS4-2|LAIR2 nc|ENSG00000167618|Q6ISS4-2|LAIR2 MSMS UPN47_class_I_Rep_1 2 499.2694396972656 2 499.269281 996.52401 NaN NaN NaN NaN NaN NaN NaN 56.504 1 59.962 59.462 60.462 3.4572 0 0 0 0.53105 1 12910 12910 3.2813 0 1 45983 4315 29038 29051 52939 52939 0.025608660635725755 TVKDGVTLY 9 Unmodified _TVKDGVTLY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS UPN46_class_I_Rep_3 1 498.2852478027344 2 498.274032 994.533512 NaN NaN NaN NaN NaN NaN NaN 43.475 1 43.475 42.975 43.975 0 0 0 0 0.15455 1 8683 8683 19.257 1.1106 1 45984 1579 29039 29052 52940 52940 0.03602634349101663 TVKDIPALESK 11 Unmodified _TVKDIPALESK_ 0 0 0 ENST00000445995.2_1_9:98056039-98057089:+|nuORF ENST00000445995.2_1_9:98056039-98057089:+|nuORF ENST00000445995.2_1_9:98056039-98057089:+|nuORF MSMS UPN48_class_I_Rep_3 7 600.8450927734375 2 600.845353 1199.67615 NaN NaN NaN NaN NaN NaN NaN 74.303 1 77.853 77.353 78.353 3.5505 0 0 0 0.38417 1 17407 17407 0 0 1 45985 6788 29040 29053 52941 52941 0.08430222020433575 TVKGPQQIL 9 Unmodified _TVKGPQQIL_ 0 0 0 REV__ENSG00000104356|ENST00000401707|POP1 REV__ENSG00000104356|ENST00000401707|POP1 MULTI-MSMS UPN48_class_I_Rep_1 5 492.2978820800781 2 492.297842 982.581131 0.17596 8.6625E-05 -0.84351 -0.00041526 -0.66755 -0.00032863 492.297890773897 42.484 0.52006 45.991 45.783 46.303 3.5079 65 44 2 0 0 0 0.49026 1 7954 7954 1.6526 0.17072 1 88997 + 45986 18255 29041 29054 52942 52942 0.08914333339930636 TVKKEIEE 8 Unmodified _TVKKEIEE_ 0 0 0 L1MA1_dup1242|chr5:43470633-43472857:+|1.280778772043289|0.0376679809874784|5.09|150.0|28|2|sense L1MA1_dup1242|chr5:43470633-43472857:+|1.280778772043289|0.0376679809874784|5.09|150.0|28|2|sense L1MA1_dup1242|chr5:43470633-43472857:+|1.280778772043289|0.0376679809874784|5.09|150.0|28|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 487.8760681152344 2 488.27149 974.528426 -0.13019 -6.3566E-05 -0.89706 -0.00043801 -1.0272 -0.00050158 488.2710825462176 15.357 0.28456 18.743 18.591 18.876 3.3864 56 34 2 0 0 0 0.72333 1 805 805 4.3292 0 1 36756 45987 9258 29042 29055 52943 52943 0.040143304864727725 TVKKGKPEL 9 Unmodified _TVKKGKPEL_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_1 2 500.3131103515625 2 500.313492 998.612431 -0.32342 -0.00016181 0.11796 5.9017E-05 -0.20546 -0.00010279 500.3132544558244 14.07 0.2711 17.545 17.458 17.729 3.475 61 32 3 0 0 0 0.21414 1 473 473 19.362 7.1213 1 80603 45988 2511 29043 29056 52944 52944 0.11306906374034043 TVKKGKPEL 9 Unmodified _TVKKGKPEL_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_2 3 500.31268310546875 2 500.313492 998.612431 -0.17649 -8.8303E-05 -0.3758 -0.00018802 -0.55229 -0.00027632 500.3130540530274 14.158 0.26341 17.545 17.46 17.723 3.3871 44 30 2 0 0 0 0.44742 1 493 493 5.2969 0 1 81051 45989 2511 29043 29056 52945 52945 0.11306906374034043 TVKKNLALA 9 Unmodified _TVKKNLALA_ 0 0 0 REV__Tigger1_dup2902|chr4:4451405-4452553:+|1.5593873167232597|0.0821138946700757|4.25|151.0|51|2|anti-sense REV__Tigger1_dup2902|chr4:4451405-4452553:+|1.5593873167232597|0.0821138946700757|4.25|151.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.30853271484375 2 479.30821 956.601866 -0.37985 -0.00018206 -0.17552 -8.4128E-05 -0.55537 -0.00026619 479.30805555194473 14.555 0.20912 18.03 17.91 18.119 3.475 42 24 2 0 0 0 0.50582 1 611 611 0 0 1 60173 + 45990 32413 29044 29057 52946 52946 0.1218292371958114 TVKKNLALA 9 Unmodified _TVKKNLALA_ 0 0 0 REV__Tigger1_dup2902|chr4:4451405-4452553:+|1.5593873167232597|0.0821138946700757|4.25|151.0|51|2|anti-sense REV__Tigger1_dup2902|chr4:4451405-4452553:+|1.5593873167232597|0.0821138946700757|4.25|151.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.3081970214844 2 479.30821 956.601866 -0.2308 -0.00011062 -0.28816 -0.00013812 -0.51896 -0.00024874 479.30798355582857 14.644 0.25833 18.031 17.908 18.166 3.3871 55 31 2 0 0 0 0.50582 1 635 635 0 0 1 54448 + 45991 32413 29044 29057 52947 52947 0.1218292371958114 TVKKRTRRL 9 Unmodified _TVKKRTRRL_ 0 0 0 REV__nc|ENSG00000146166|Q5TDP6-3|LGSN REV__nc|ENSG00000146166|Q5TDP6-3|LGSN MSMS UPN47_class_I_Rep_3 4 579.2933349609375 2 579.383106 1156.75166 NaN NaN NaN NaN NaN NaN NaN 96.818 1 100.23 99.733 100.73 3.414 0 0 0 0.40098 1 24005 24005 0.45834 0 1 + 45992 19532 29045 29058 52948 52948 0.1795528878208188 TVKLKLSATH 10 Unmodified _TVKLKLSATH_ 0 0 0 REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|46|2|sense REV__L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|46|2|sense MSMS UPN46_class_I_Rep_3 1 549.3369140625 2 549.337498 1096.66044 NaN NaN NaN NaN NaN NaN NaN 33.136 1 33.136 32.636 33.636 0 0 0 0 0.53105 1 5760 5760 0.40072 0 1 + 45993 27257 29046 29059 52949 52949 0.1159798029407284 TVKNRKKI 8 Unmodified _TVKNRKKI_ 0 0 0 REV__L1M5_dup22510|chr7:18382646-18383216:+|1.1256102432860988|0.007286698511733|7.27|148.0|16|2|sense REV__L1M5_dup22510|chr7:18382646-18383216:+|1.1256102432860988|0.007286698511733|7.27|148.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 493.81658935546875 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 64.579 1 68.054 67.554 68.554 3.4743 0 0 0 0.40643 1 14611 14611 2.0598 0 1 + 45994 24638 29047 29060 52950 52950 0.14625434705067164 TVKPIYLDV 9 Unmodified _TVKPIYLDV_ 0 0 0 REV__ENST00000555056.1_1_14:94770757-94780257:-|nuORF REV__ENST00000555056.1_1_14:94770757-94780257:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 524.3065185546875 2 524.307875 1046.6012 0.29978 0.00015718 -0.67154 -0.0003521 -0.37176 -0.00019492 524.3075027941026 75.325 0.36975 75.325 75.227 75.597 0 46 34 2 0 0 0 0.36392 1 17531 17531 10.074 0 1 551980 + 45995 20350 29048 29061 52951 52951 0.07976084279857787 TVKPQIQGL 9 Unmodified _TVKPQIQGL_ 0 0 0 ENST00000418510.1_1_22:26043331-26044389:+|nuORF ENST00000418510.1_1_22:26043331-26044389:+|nuORF ENST00000418510.1_1_22:26043331-26044389:+|nuORF MSMS UPN48_class_I_Rep_2 6 492.7428283691406 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 62.942 1 66.416 65.916 66.916 3.4738 0 0 0 0.39598 1 14110 14110 1.6526 0 1 45996 6667 29049 29062 52952 52952 0.08914333339930636 TVKQKYLSF 9 Unmodified _TVKQKYLSF_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENST00000556425.2_1_15:21937379-21938108:-|nuORF ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS UPN47_class_I_Rep_1 2 557.318359375 2 557.318774 1112.623 -0.019185 -1.0692E-05 0.22546 0.00012565 0.20627 0.00011496 557.3186800656723 37.724 0.82755 41.39 41.053 41.881 3.6652 134 62 3 0 0 0 0.12096 3 7185 7145;7185;7231 29.841 8.3036 1 160850 45997 4888 29050 29063 52953;52954;52955 52954 0.07118889028447484 TVKQKYLSF 9 Unmodified _TVKQKYLSF_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENST00000556425.2_1_15:21937379-21938108:-|nuORF ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS UPN47_class_I_Rep_2 3 557.3187255859375 2 557.318774 1112.623 0.045389 2.5296E-05 -0.097319 -5.4237E-05 -0.051929 -2.8941E-05 557.3187252073947 38.103 0.78493 41.491 41.131 41.916 3.3879 112 63 2 0 0 0 0.13455 5 7321 7282;7321;7361;7397;7437 27.223 10.417 1 106350 45998 4888 29050 29063 52956;52957;52958;52959;52960 52957 0.07118889028447484 TVKQKYLSF 9 Unmodified _TVKQKYLSF_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENST00000556425.2_1_15:21937379-21938108:-|nuORF ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS UPN47_class_I_Rep_3 4 557.31884765625 2 557.318774 1112.623 -0.060483 -3.3708E-05 -0.0069025 -3.8469E-06 -0.067386 -3.7555E-05 557.3187522640244 38.314 1.022 41.555 41.226 42.248 3.2414 113 74 2 0 0 0 0.11355 7 7456 7372;7412;7456;7496;7535;7547;7574 31.268 12.011 1 94416 45999 4888 29050 29063 52961;52962;52963;52964;52965;52966;52967 52963 0.07118889028447484 TVKREKFIEC 10 Unmodified _TVKREKFIEC_ 0 0 0 REV__L1ME3A_dup8495|chr9:128681391-128681688:-|1.9528764675788748|0.0419789401143978|5.54|151.0|7|2|sense REV__L1ME3A_dup8495|chr9:128681391-128681688:-|1.9528764675788748|0.0419789401143978|5.54|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 626.841064453125 2 626.839548 1251.66454 NaN NaN NaN NaN NaN NaN NaN 51.526 1 51.526 51.026 52.026 0 0 0 0 0.53105 1 10960 10960 3.5965 1.7523 1 + 46000 28039 29051 29064 52968 52968 0.04877701725490624 TVKTEKLRS 9 Unmodified _TVKTEKLRS_ 0 0 0 REV__L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|2|1|sense REV__L1MC4_dup886|chr1:110876789-110877305:-|1.5132557877847208|0.0664544575766384|4.51|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 531.3195190429688 2 531.319306 1060.62406 0.43126 0.00022914 -0.32944 -0.00017504 0.10182 5.4101E-05 531.3191355107163 86.151 0.52002 89.522 89.424 89.944 3.3716 94 65 2 0 0 0 0.48846 1 21605 21605 1.8442 0 1 123300 + 46001 26950 29052 29065 52969 52969 0.09617103397340543 TVKTKTTK 8 Unmodified _TVKTKTTK_ 0 0 0 ENST00000396020.7_1_14:50043976-50044102:-|nuORF ENST00000396020.7_1_14:50043976-50044102:-|nuORF ENST00000396020.7_1_14:50043976-50044102:-|nuORF MSMS UPN47_class_I_Rep_3 4 453.7839050292969 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 50.99 1 54.206 53.706 54.706 3.2163 0 0 0 0.40798 1 11310 11310 0 0 1 46002 6559 29053 29066 52970 52970 0.0980264444859813 TVKTKTTK 8 Unmodified _TVKTKTTK_ 0 0 0 ENST00000396020.7_1_14:50043976-50044102:-|nuORF ENST00000396020.7_1_14:50043976-50044102:-|nuORF ENST00000396020.7_1_14:50043976-50044102:-|nuORF MSMS UPN48_class_I_Rep_2 6 453.78369140625 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 116.65 1 120.31 119.81 120.81 3.6607 0 0 0 0.40798 1 27944 27944 0 0 1 46003 6559 29053 29066 52971 52971 0.0980264444859813 TVKVHVVAL 9 Unmodified _TVKVHVVAL_ 0 0 0 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 MULTI-MSMS UPN47_class_I_Rep_1 2 483.3104248046875 2 483.310752 964.606951 -0.28058 -0.00013561 0.41899 0.0002025 0.1384 6.6892E-05 483.31072956421434 39.026 0.56228 42.692 42.471 43.033 3.6652 42 34 2 0 0 0 0.30034 1 7598 7598 13.906 0 1 51796 46004 2423 29054 29067 52972 52972 0.12323227582214713 TVKVHVVAL 9 Unmodified _TVKVHVVAL_ 0 0 0 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 MSMS UPN47_class_I_Rep_3 4 483.31011962890625 2 483.310752 964.606951 NaN NaN NaN NaN NaN NaN NaN 39.591 1 42.829 42.329 43.329 3.238 0 0 0 0.38073 1 7839 7839 5.2969 0.54088 1 46005 2423 29054 29067 52973 52973 0.12323227582214713 TVLDALHVA 9 Unmodified _TVLDALHVA_ 0 0 0 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 MSMS UPN47_class_I_Rep_1 2 469.7690734863281 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 58.526 1 61.943 61.443 62.443 3.4171 0 0 0 0.28335 1 13521 13521 11.64 0 1 46006 4650 29055 29068 52974 52974 0.05202071414510101 TVLDALHVA 9 Unmodified _TVLDALHVA_ 0 0 0 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 MSMS UPN47_class_I_Rep_1 2 469.7685546875 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 58.851 1 62.268 61.768 62.768 3.4171 0 0 0 0.35339 1 13620 13620 7.9102 0 1 46007 4650 29055 29068 52975 52975 0.05202071414510101 TVLEKVYEL 9 Unmodified _TVLEKVYEL_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_1 2 547.3109741210938 2 547.310615 1092.60668 0.41494 0.0002271 0.13779 7.5411E-05 0.55273 0.00030251 547.3105397856062 57.101 0.76197 60.559 60.286 61.048 3.4572 96 71 2 0 0 0 0.061655 3 13110 13110;13172;13212 43.982 9.5801 1 256210 46008 5749 29056 29069 52976;52977;52978 52976 0.0640776307170654 TVLEKVYEL 9 Unmodified _TVLEKVYEL_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_2 3 547.31103515625 2 547.310615 1092.60668 0.49567 0.00027129 -0.048564 -2.658E-05 0.44711 0.00024471 547.3104174990636 57.448 0.61048 60.739 60.486 61.097 3.2912 101 53 3 0 0 0 0.16799 1 13255 13255 23.79 5.6434 1 355260 46009 5749 29056 29069 52979 52979 0.0640776307170654 TVLEKVYEL 9 Unmodified _TVLEKVYEL_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_3 4 547.3106079101562 2 547.310615 1092.60668 0.35568 0.00019467 0.40892 0.00022381 0.7646 0.00041847 547.3106871831824 57.489 0.41751 60.657 60.319 60.737 3.1681 57 34 2 0 0 0 0.1293 1 13271 13271 28.234 6.6966 1 209210 46010 5749 29056 29069 52980 52980 0.0640776307170654 TVLEKVYEL 9 Unmodified _TVLEKVYEL_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_3 4 547.8125 2 547.310615 1092.60668 0.34747 0.00019017 0.27977 0.00015312 0.62725 0.0003433 547.3106447766158 57.703 0.37645 60.871 60.715 61.092 3.1681 68 33 3 0 0 0 0.2924 1 13351 13351 14.405 1.3629 1 234870 46011 5749 29056 29069 52981 52981 0.0640776307170654 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-MSMS UPN46_class_I_Rep_3 1 529.8082885742188 2 529.808239 1057.60193 0.30124 0.0001596 -0.34046 -0.00018038 -0.039221 -2.0779E-05 529.8080855696771 74.254 0.46229 74.254 74.085 74.547 0 116 54 3 0 0 0 0.0055879 4 17234 17200;17234;17267;17294 80.676 1.249 1 4338600 46012 5676 29057 29070 52982;52983;52984;52985 52983 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-MSMS UPN47_class_I_Rep_1 2 529.8085327148438 2 529.808239 1057.60193 0.30204 0.00016003 -0.14957 -7.9243E-05 0.15247 8.0782E-05 529.8081238253899 67.55 0.97957 70.911 70.504 71.483 3.3611 223 77 3 0 0 0 0.098221 2 16424 16143;16424 34.222 3.5183 1 1546300 46013 5676 29057 29070 52986;52987 52987 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-MSMS UPN47_class_I_Rep_1 2 529.80859375 2 529.808239 1057.60193 0.30742 0.00016288 -0.31953 -0.00016929 -0.012104 -6.4126E-06 529.8081253497869 68.416 0.42395 71.781 71.713 72.137 3.3646 63 31 3 0 0 0 0.095207 1 16575 16575 34.932 0 1 191560 46014 5676 29057 29070 52988 52988 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MSMS UPN47_class_I_Rep_1 2 529.8079833984375 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 68.749 1 72.113 71.613 72.613 3.3646 0 0 0 0.10427 1 16617 16617 23.79 0 1 46015 5676 29057 29070 52989 52989 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-SECPEP UPN47_class_I_Rep_1 2 529.80810546875 2 529.808239 1057.60193 0.30586 0.00016204 -0.044716 -2.3691E-05 0.26114 0.00013835 529.8080975089516 68.262 0.23686 71.627 71.487 71.724 3.3646 44 17 3 0 0 0 0.11674 1 16461 16461 12.873 0 1 273070 46016 5676 29057 29070 52990 52990 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-MSMS UPN47_class_I_Rep_2 3 529.808349609375 2 529.808239 1057.60193 0.16584 8.7865E-05 -0.070048 -3.7112E-05 0.095796 5.0753E-05 529.8081655202908 67.766 1.1896 71.03 70.648 71.838 3.2636 185 102 4 0 0 0 0.013952 4 16508 16273;16288;16508;16586 100.09 0 1 1213100 46017 5676 29057 29070 52991;52992;52993;52994 52993 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-MSMS UPN47_class_I_Rep_2 3 529.8076171875 2 529.808239 1057.60193 0.1724 9.1337E-05 -0.13809 -7.316E-05 0.03431 1.8178E-05 530.3096854530932 68.693 0.17754 71.963 71.844 72.021 3.2696 24 15 2 0 0 0 0.10956 1 16629 16629 32.037 0 1 239100 46018 5676 29057 29070 52995 52995 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MULTI-MSMS UPN47_class_I_Rep_3 4 529.808349609375 2 529.808239 1057.60193 0.37722 0.00019986 -0.1487 -7.8783E-05 0.22852 0.00012107 529.8081088416831 67.905 1.2533 71.102 70.606 71.859 3.1972 252 92 4 0 0 0 0.014506 4 16424 16339;16424;16621;16660 103.82 6.0825 1 1188500 46019 5676 29057 29070 52996;52997;52998;52999 52997 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MSMS UPN47_class_I_Rep_3 4 529.8082275390625 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 68.675 1 71.873 71.373 72.373 3.1977 0 0 0 0.081356 1 16701 16701 28.495 0 1 46020 5676 29057 29070 53000 53000 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MSMS UPN47_class_I_Rep_3 4 529.8079223632812 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 68.93 1 72.128 71.628 72.628 3.1977 0 0 0 0.21832 1 16779 16779 15.248 0 1 46021 5676 29057 29070 53001 53001 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MSMS UPN47_class_I_Rep_3 4 529.80810546875 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 69.061 1 72.266 71.766 72.766 3.2044 0 0 0 0.27207 1 16818 16818 12.241 0 1 46022 5676 29057 29070 53002 53002 0.0754287892893899 TVLELNEKI 9 Unmodified _TVLELNEKI_ 0 0 0 ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 ENSG00000230561|ENST00000514853|CCDC192 MSMS UPN47_class_I_Rep_3 4 529.8082885742188 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 69.441 1 72.646 72.146 73.146 3.2044 0 0 0 0.28608 1 16932 16932 11.495 0 1 46023 5676 29057 29070 53003 53003 0.0754287892893899 TVLFRPIH 8 Unmodified _TVLFRPIH_ 0 0 0 ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1 ENSG00000075275|ENST00000674500|CELSR1 ENSG00000075275|ENST00000674500|CELSR1 MSMS UPN48_class_I_Rep_1 5 491.7954406738281 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.869 1 63.349 62.849 63.849 3.4801 0 0 0 0.40604 1 13193 13193 2.5775 0 1 46024 1143 29058 29071 53004 53004 0.08446074267999393 TVLGRRPVTV 10 Unmodified _TVLGRRPVTV_ 0 0 0 HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 549.3442993164062 2 549.343115 1096.67168 NaN NaN NaN NaN NaN NaN NaN 108.42 1 108.42 107.92 108.92 0 0 0 0 0.53105 1 26513 26513 13.906 2.2658 1 46025 8053 29059 29072 53005 53005 0.1272080238820763 TVLGRRPVTV 10 Unmodified _TVLGRRPVTV_ 0 0 0 HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 549.3436889648438 2 549.343115 1096.67168 0.46734 0.00025673 0.35911 0.00019727 0.82645 0.000454 549.3431739468283 107.86 0.4623 111.49 111.41 111.87 3.6313 75 38 3 0 0 0 0.47413 1 26013 26013 13.906 0 1 56114000 46026 8053 29059 29072 53006 53006 0.1272080238820763 TVLGRRPVTV 10 Unmodified _TVLGRRPVTV_ 0 0 0 HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense HERV35I-int_dup451|chr16:8829114-8830283:-|1.31397173046135|0.0652391468642272|4.33|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.3433227539062 2 549.343115 1096.67168 0.48954 0.00026893 0.18253 0.00010027 0.67207 0.0003692 549.3430382430375 107.81 0.12318 111.49 111.43 111.56 3.6783 28 10 3 0 0 0 0.47413 1 25502 25502 13.906 1.6654 1 62534000 46027 8053 29059 29072 53007 53007 0.1272080238820763 TVLHLFPR 8 Unmodified _TVLHLFPR_ 0 0 0 REV__L1PA6_dup3120|chr8:74015889-74022085:+|1.252688891571788|0.1094165933798573|3.52|151.0|212|1|anti-sense REV__L1PA6_dup3120|chr8:74015889-74022085:+|1.252688891571788|0.1094165933798573|3.52|151.0|212|1|anti-sense MSMS UPN48_class_I_Rep_1 5 491.749755859375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 72.712 1 76.185 75.685 76.685 3.4732 0 0 0 0.40625 1 17084 17084 2.3027 0 1 + 46028 29871 29060 29073 53008 53008 0.08446074267999393 TVLHRLML 8 Unmodified _TVLHRLML_ 0 0 0 L1MD2_dup9259|chr16:68145446-68145988:+|1.7492568719493742|0.0387499337075485|5.5|151.0|2|1|sense L1MD2_dup9259|chr16:68145446-68145988:+|1.7492568719493742|0.0387499337075485|5.5|151.0|2|1|sense L1MD2_dup9259|chr16:68145446-68145988:+|1.7492568719493742|0.0387499337075485|5.5|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 491.7961120605469 2 491.796955 981.579357 NaN NaN NaN NaN NaN NaN NaN 73.266 1 76.747 76.247 77.247 3.4812 0 0 0 0.40746 1 17254 17254 0.69038 0 1 46029 12044 29061 29074 53009 53009 0.08783001050335315 TVLHSSKLV 9 Unmodified _TVLHSSKLV_ 0 0 0 REV__Tigger13a_dup2678|chr16:22404745-22405010:+|1.6678467038473888|0.045432370277561|5.2|151.0|19|2|anti-sense REV__Tigger13a_dup2678|chr16:22404745-22405010:+|1.6678467038473888|0.045432370277561|5.2|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_2 6 492.2980651855469 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 42.267 1 46.025 45.525 46.525 3.7579 0 0 0 0.37476 1 7804 7804 6.7232 0 1 + 46030 32587 29062 29075 53010 53010 0.08914333339942004 TVLKEAPRLVQ 11 Unmodified _TVLKEAPRLVQ_ 0 0 0 REV__ENSG00000196878|ENST00000356082|LAMB3 REV__ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS UPN48_class_I_Rep_2 6 627.3836059570312 2 627.382437 1252.75032 0.49519 0.00031067 0.041365 2.5952E-05 0.53656 0.00033663 627.3826773031997 103.43 0.47246 107.14 106.84 107.31 3.7108 157 72 3 0 0 0 0.65559 1 24494 24494 2.7352 0 1 54708000 + 46031 21057 29063 29076 53011 53011 0.1340560990265658 TVLKMHKRLK 10 Unmodified _TVLKMHKRLK_ 0 0 0 L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|44|2|sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|44|2|sense L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|44|2|sense MSMS UPN47_class_I_Rep_1 2 627.381591796875 2 627.397367 1252.78018 NaN NaN NaN NaN NaN NaN NaN 103.63 1 107.41 106.91 107.91 3.7788 0 0 0 0.53105 1 25475 25475 2.9952 0 1 46032 9067 29064 29077 53012 53012 0.163902703669919 TVLLKKEE 8 Unmodified _TVLLKKEE_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS UPN47_class_I_Rep_1 2 480.29229736328125 2 480.292225 958.569897 0.1527 7.3341E-05 -0.096306 -4.6255E-05 0.056395 2.7086E-05 480.2920066335922 59.317 0.77223 62.734 62.514 63.286 3.4171 88 52 2 0 0 0 0.82752 1 13722 13722 10.824 0 1 205300 46033 5560 29065 29078 53013 53013 0.0889551124580521 TVLLKKEE 8 Unmodified _TVLLKKEE_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS UPN47_class_I_Rep_2 3 480.29217529296875 2 480.292225 958.569897 0.23416 0.00011247 -0.31994 -0.00015367 -0.085781 -4.12E-05 480.29199239320513 59.605 0.76376 62.878 62.581 63.345 3.2731 82 47 2 0 0 0 0.82752 1 13836 13836 7.2892 0 1 317240 46034 5560 29065 29078 53014 53014 0.0889551124580521 TVLLKRPF 8 Unmodified _TVLLKRPF_ 0 0 0 REV__nc|ENSG00000170537|Q7Z402-2|TMC7 REV__nc|ENSG00000170537|Q7Z402-2|TMC7 MSMS UPN48_class_I_Rep_2 6 487.3130798339844 2 487.313295 972.612037 NaN NaN NaN NaN NaN NaN NaN 56.346 1 59.879 59.379 60.379 3.5333 0 0 0 0.3903 1 12092 12092 11.64 0 1 + 46035 20368 29066 29079 53015 53015 0.12463531444836917 TVLLKRPF 8 Unmodified _TVLLKRPF_ 0 0 0 REV__nc|ENSG00000170537|Q7Z402-2|TMC7 REV__nc|ENSG00000170537|Q7Z402-2|TMC7 MSMS UPN48_class_I_Rep_3 7 487.31329345703125 2 487.313295 972.612037 NaN NaN NaN NaN NaN NaN NaN 55.92 1 59.475 58.975 59.975 3.5554 0 0 0 0.37681 1 11901 11901 15.847 0 1 + 46036 20368 29066 29079 53016 53016 0.12463531444836917 TVLLLLPRLE 10 Unmodified _TVLLLLPRLE_ 0 0 0 AluSp_dup11732|chr4:39707904-39708199:-|1.3002489460759932|0.0115215947024481|6.82|151.0|13|1|anti-sense AluSp_dup11732|chr4:39707904-39708199:-|1.3002489460759932|0.0115215947024481|6.82|151.0|13|1|anti-sense AluSp_dup11732|chr4:39707904-39708199:-|1.3002489460759932|0.0115215947024481|6.82|151.0|13|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 583.3771362304688 2 583.878999 1165.74344 0.13026 7.6056E-05 -0.52078 -0.00030407 -0.39052 -0.00022802 583.8787378528355 43.256 0.06451 46.498 46.453 46.517 3.2419 5 3 2 0 0 0 0.84575 1 8963 8963 0.40072 0 1 139880 46037 224 29067 29080 53017 53017 0.16720297022084196 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 491.7958679199219 2 491.795269 981.575986 0.23052 0.00011337 2.8413 0.0013973 3.0718 0.0015107 491.79573786248767 52.764 0.50851 52.764 52.59 53.098 0 91 54 2 0 0 0 0.72333 1 11284 11284 4.756 0 1 221950 + 46038 18363 29068 29081 53018 53018 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MSMS UPN48_class_I_Rep_1 5 492.2631530761719 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.059 1 48.575 48.075 49.075 3.5162 0 0 0 0.40604 1 8649 8649 2.5775 0 1 + 46039 18363 29068 29081 53019 53019 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 491.7946472167969 2 491.795269 981.575986 0.34668 0.00017049 1.3042 0.00064139 1.6509 0.00081189 491.79581957284006 59.568 0.52794 63.054 62.743 63.271 3.4868 56 37 2 0 0 0 0.82752 1 13096 13096 7.2892 0 1 189380 + 46040 18363 29068 29081 53020 53020 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MSMS UPN48_class_I_Rep_2 6 491.79632568359375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.542 1 67.016 66.516 67.516 3.4743 0 0 0 0.40643 1 14295 14295 2.0598 0 1 + 46041 18363 29068 29081 53021 53021 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 491.7956237792969 2 491.795269 981.575986 0.2145 0.00010549 1.5099 0.00074256 1.7244 0.00084805 491.7957965689583 59.526 0.21224 63.043 62.963 63.175 3.5169 25 15 3 0 0 0 0.82752 1 13028 13028 7.2892 0 1 163310 + 46042 18363 29068 29081 53022 53022 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.7961120605469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 49.966 1 53.587 53.087 54.087 3.621 0 0 0 0.4044 1 10087 10087 4.756 0 1 + 46043 18363 29068 29081 53023 53023 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.7951965332031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 63.756 1 67.265 66.765 67.765 3.5091 0 0 0 0.40604 1 14279 14279 2.5775 0 1 + 46044 18363 29068 29081 53024 53024 0.08446074267999393 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF REV__ENST00000493154.1_1_10:24889621-24896510:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.7959289550781 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.734 1 70.242 69.742 70.742 3.5077 0 0 0 0.40604 1 15180 15180 2.5775 0 1 + 46045 18363 29068 29081 53025 53025 0.08446074267999393 TVLQLRTR 8 Unmodified _TVLQLRTR_ 0 0 0 ENST00000448393.6_1_1:158985703-158988049:+|nuORF;ENST00000567661.5_1_1:158985561-158988046:+|nuORF ENST00000448393.6_1_1:158985703-158988049:+|nuORF ENST00000448393.6_1_1:158985703-158988049:+|nuORF MSMS UPN46_class_I_Rep_3 1 493.8099365234375 2 493.808908 985.603263 NaN NaN NaN NaN NaN NaN NaN 62.24 1 62.24 61.74 62.74 0 0 0 0 0.4044 1 13906 13906 4.756 0 1 46046 6799 29069 29082 53026 53026 0.10988557808389032 TVLQNTEIY 9 Unmodified _TVLQNTEIY_ 0 0 0 ENST00000448876.5_1_3:185000742-185003333:+|nuORF ENST00000448876.5_1_3:185000742-185003333:+|nuORF ENST00000448876.5_1_3:185000742-185003333:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 540.7816162109375 2 540.782222 1079.54989 0.02148 1.1616E-05 -0.30741 -0.00016624 -0.28593 -0.00015463 540.7817178673848 41.4 0.6209 45.072 44.863 45.484 3.6719 87 45 3 0 0 0 0.31407 1 8294 8294 13.042 0 1 126990 46047 6803 29070 29083 53027 53027 0.013297155152031337 TVLRKLKQ 8 Unmodified _TVLRKLKQ_ 0 0 0 REV__L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense REV__L1MC4a_dup6102|chr10:87162671-87163412:+|1.2447953088076191|0.0749224192871118|4.05|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.3296203613281 2 493.329476 984.6444 -0.32586 -0.00016076 0.15299 7.5474E-05 -0.17287 -8.5282E-05 493.3294878421377 20.945 0.74136 24.589 24.252 24.994 3.6436 140 80 2 0 0 0 0.82752 1 2220 2220 2.5775 0 1 143820 + 46048 27004 29071 29084 53028 53028 0.1514631884784876 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_2 3 484.7881774902344 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 38.22 1 41.608 41.108 42.108 3.3879 0 0 0 0.4044 1 7377 7377 4.756 0 1 + 46049 27093 29072 29085 53029 53029 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_2 3 484.78802490234375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 38.479 1 41.867 41.367 42.367 3.3879 0 0 0 0.4044 1 7455 7455 4.756 0 1 + 46050 27093 29072 29085 53030 53030 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_2 3 484.78753662109375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 38.609 1 41.997 41.497 42.497 3.3879 0 0 0 0.4044 1 7494 7494 4.756 0 1 + 46051 27093 29072 29085 53031 53031 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 484.7376708984375 2 484.787444 967.560336 -0.172 -8.3385E-05 0.63414 0.00030742 0.46214 0.00022404 484.7882188914945 39.116 0.10043 42.494 42.421 42.522 3.3785 7 4 2 0 0 0 0.72333 1 7634 7634 2.5775 0 1 31598 + 46052 27093 29072 29085 53032 53032 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.78753662109375 2 484.787444 967.560336 0.16711 8.1011E-05 0.66825 0.00032396 0.83535 0.00040497 484.7877810057361 38.398 1.4414 41.903 41.266 42.707 3.5052 276 129 3 0 0 0 0.82752 5 6536 6464;6501;6536;6574;6620 12.532 0 1 318400 + 46053 27093 29072 29085 53033;53034;53035;53036;53037 53035 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7887878417969 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 39.591 1 43.096 42.596 43.596 3.5048 0 0 0 0.4044 1 7010 7010 4.756 0 1 + 46054 27093 29072 29085 53038 53038 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.78851318359375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.845 1 46.355 45.855 46.855 3.5103 0 0 0 0.39819 1 7973 7973 8.5933 0 1 + 46055 27093 29072 29085 53039 53039 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7882080078125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 44.877 1 48.39 47.89 48.89 3.5132 0 0 0 0.4044 1 8593 8593 4.756 0 1 + 46056 27093 29072 29085 53040 53040 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.78765869140625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.032 1 53.557 53.057 54.057 3.5246 0 0 0 0.4044 1 10175 10175 4.756 0 1 + 46057 27093 29072 29085 53041 53041 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.78717041015625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.25 1 53.774 53.274 54.274 3.5246 0 0 0 0.4044 1 10242 10242 4.756 0 1 + 46058 27093 29072 29085 53042 53042 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7882385253906 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.902 1 54.427 53.927 54.927 3.5246 0 0 0 0.4044 1 10443 10443 4.756 0 1 + 46059 27093 29072 29085 53043 53043 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.78778076171875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 52.603 1 56.123 55.623 56.623 3.5192 0 0 0 0.4044 1 10955 10955 4.756 0 1 + 46060 27093 29072 29085 53044 53044 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.78851318359375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 53.724 1 57.238 56.738 57.738 3.5143 0 0 0 0.4044 1 11305 11305 4.756 0 1 + 46061 27093 29072 29085 53045 53045 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.78765869140625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 53.864 1 57.378 56.878 57.878 3.5143 0 0 0 0.4044 1 11348 11348 4.756 0 1 + 46062 27093 29072 29085 53046 53046 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7890930175781 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 54.127 1 57.641 57.141 58.141 3.5143 0 0 0 0.4044 1 11430 11430 4.756 0 1 + 46063 27093 29072 29085 53047 53047 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7877502441406 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 54.175 1 57.689 57.189 58.189 3.5143 0 0 0 0.4044 1 11444 11444 4.756 0 1 + 46064 27093 29072 29085 53048 53048 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7882080078125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.313 1 60.807 60.307 61.307 3.4942 0 0 0 0.40643 1 12408 12408 2.0598 0 1 + 46065 27093 29072 29085 53049 53049 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7882080078125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.735 1 61.229 60.729 61.729 3.4942 0 0 0 0.4044 1 12534 12534 4.756 0 1 + 46066 27093 29072 29085 53050 53050 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7881164550781 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 62.728 1 66.19 65.69 66.69 3.4625 0 0 0 0.4044 1 14063 14063 4.756 0 1 + 46067 27093 29072 29085 53051 53051 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7877502441406 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 39.293 1 43.022 42.522 43.522 3.7297 0 0 0 0.40404 1 6953 6953 5.2307 0 1 + 46068 27093 29072 29085 53052 53052 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78802490234375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.243 1 46.001 45.501 46.501 3.7579 0 0 0 0.4044 1 7798 7798 4.756 0 1 + 46069 27093 29072 29085 53053 53053 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7877197265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.348 1 54.042 53.542 54.542 3.6946 0 0 0 0.4044 1 10270 10270 4.756 0 1 + 46070 27093 29072 29085 53054 53054 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7884826660156 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.736 1 54.404 53.904 54.904 3.6679 0 0 0 0.4044 1 10387 10387 4.756 0 1 + 46071 27093 29072 29085 53055 53055 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78814697265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 51.26 1 54.928 54.428 55.428 3.6679 0 0 0 0.4044 1 10548 10548 4.756 0 1 + 46072 27093 29072 29085 53056 53056 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7875671386719 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 52.57 1 56.209 55.709 56.709 3.639 0 0 0 0.4044 1 10933 10933 4.756 0 1 + 46073 27093 29072 29085 53057 53057 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78729248046875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 53.59 1 57.2 56.7 57.7 3.6098 0 0 0 0.4044 1 11247 11247 4.756 0 1 + 46074 27093 29072 29085 53058 53058 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.787841796875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 53.753 1 57.363 56.863 57.863 3.6098 0 0 0 0.4044 1 11297 11297 4.756 0 1 + 46075 27093 29072 29085 53059 53059 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7884826660156 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 54.282 1 57.864 57.364 58.364 3.5817 0 0 0 0.4044 1 11458 11458 4.756 0 1 + 46076 27093 29072 29085 53060 53060 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7880859375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 54.68 1 58.262 57.762 58.762 3.5817 0 0 0 0.4044 1 11581 11581 4.756 0 1 + 46077 27093 29072 29085 53061 53061 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78851318359375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 55.052 1 58.608 58.108 59.108 3.5559 0 0 0 0.4044 1 11696 11696 4.756 0 1 + 46078 27093 29072 29085 53062 53062 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7882995605469 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 55.596 1 59.152 58.652 59.652 3.5559 0 0 0 0.40604 1 11864 11864 2.5775 0 1 + 46079 27093 29072 29085 53063 53063 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7881164550781 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.014 1 60.547 60.047 61.047 3.5333 0 0 0 0.4044 1 12294 12294 4.756 0 1 + 46080 27093 29072 29085 53064 53064 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78839111328125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.467 1 60.982 60.482 61.482 3.5142 0 0 0 0.4044 1 12432 12432 4.756 0 1 + 46081 27093 29072 29085 53065 53065 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7880859375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 57.795 1 61.31 60.81 61.81 3.5142 0 0 0 0.40604 1 12530 12530 2.5775 0 1 + 46082 27093 29072 29085 53066 53066 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78826904296875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 58.28 1 61.779 61.279 62.279 3.4987 0 0 0 0.4044 1 12679 12679 4.756 0 1 + 46083 27093 29072 29085 53067 53067 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.78863525390625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 65.277 1 68.756 68.256 69.256 3.4792 0 0 0 0.40643 1 14826 14826 2.0598 0 1 + 46084 27093 29072 29085 53068 53068 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7887268066406 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.613 1 46.254 45.754 46.754 3.6415 0 0 0 0.39819 1 7828 7828 8.5933 0 1 + 46085 27093 29072 29085 53069 53069 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7880554199219 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 42.825 1 46.466 45.966 46.966 3.6415 0 0 0 0.39819 1 7894 7894 8.5933 0 1 + 46086 27093 29072 29085 53070 53070 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.788330078125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 44.749 1 48.387 47.887 48.887 3.6372 0 0 0 0.4044 1 8489 8489 4.756 0 1 + 46087 27093 29072 29085 53071 53071 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.78826904296875 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 44.898 1 48.535 48.035 49.035 3.6372 0 0 0 0.4044 1 8535 8535 4.756 0 1 + 46088 27093 29072 29085 53072 53072 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7882995605469 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 49.953 1 53.574 53.074 54.074 3.621 0 0 0 0.4044 1 10083 10083 4.756 0 1 + 46089 27093 29072 29085 53073 53073 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.78814697265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 50.986 1 54.597 54.097 55.097 3.6105 0 0 0 0.4044 1 10402 10402 4.756 0 1 + 46090 27093 29072 29085 53074 53074 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.788330078125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 51.418 1 55.028 54.528 55.528 3.6105 0 0 0 0.4044 1 10535 10535 4.756 0 1 + 46091 27093 29072 29085 53075 53075 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7873229980469 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 52.196 1 55.794 55.294 56.294 3.5979 0 0 0 0.4044 1 10762 10762 4.756 0 1 + 46092 27093 29072 29085 53076 53076 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7877502441406 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 52.709 1 56.307 55.807 56.807 3.5979 0 0 0 0.40643 1 10912 10912 2.0598 0 1 + 46093 27093 29072 29085 53077 53077 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7876281738281 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 53.706 1 57.289 56.789 57.789 3.5836 0 0 0 0.4044 1 11219 11219 4.756 0 1 + 46094 27093 29072 29085 53078 53078 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.78753662109375 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 54.897 1 58.466 57.966 58.966 3.5694 0 0 0 0.4044 1 11586 11586 4.756 0 1 + 46095 27093 29072 29085 53079 53079 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7882385253906 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 58.475 1 61.998 61.498 62.498 3.5231 0 0 0 0.4044 1 12675 12675 4.756 0 1 + 46096 27093 29072 29085 53080 53080 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 484.787444 967.560336 0.20944 0.00010153 1.0898 0.00052832 1.2992 0.00062985 484.7878007723766 37.874 1.2956 41.59 41.088 42.383 3.7164 -0.14301 8.9507E-05 NaN 12.532 206 130 2 NaN NaN NaN NaN 0 NaN NaN 0 209490 + 46097 27093 29072 29085 0.07525787750944346 TVLRPFHV 8 Unmodified _TVLRPFHV_ 0 0 0 REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense REV__L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|60|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 484.787444 967.560336 0.13976 6.7755E-05 1.0325 0.00050055 1.1723 0.0005683 484.7878315103292 38.046 1.2382 41.706 41.123 42.361 3.6595 -0.027423 3.397E-05 NaN 12.532 209 122 3 NaN NaN NaN NaN 0 NaN NaN 0 239310 + 46098 27093 29072 29085 0.07525787750944346 TVLTDMATI 9 Unmodified _TVLTDMATI_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MSMS UPN47_class_I_Rep_1 2 482.7542419433594 2 482.754618 963.494683 NaN NaN NaN NaN NaN NaN NaN 67.08 1 70.441 69.941 70.941 3.3611 0 0 0 0.22485 1 16109 16109 14.838 0 1 + 46099 17600 29073 29086 53081 53081 0.011475857230834663 TVLTDMATI 9 Unmodified _TVLTDMATI_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS UPN47_class_I_Rep_3 4 482.75421142578125 2 482.754618 963.494683 0.10834 5.2302E-05 -0.15095 -7.2871E-05 -0.042607 -2.0569E-05 482.7543495880042 67.276 0.43555 70.467 70.287 70.723 3.1914 47 32 2 0 0 0 0.36392 1 16247 16247 10.074 0 1 68880 + 46100 17600 29073 29086 53082 53082 0.011475857230834663 TVLTDMATI 9 Unmodified _TVLTDMATI_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MULTI-MATCH UPN47_class_I_Rep_2 3 2 482.754618 963.494683 0.14088 6.801E-05 0.045753 2.2088E-05 0.18663 9.0097E-05 482.7545155538226 67.208 0.45424 70.471 70.324 70.779 3.2636 0.0019825 9.3808E-05 NaN 10.074 42 35 2 NaN NaN NaN NaN 0 NaN NaN 0 51900 + 46101 17600 29073 29086 0.011475857230834663 TVLTDMATI 9 Unmodified _TVLTDMATI_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 482.754618 963.494683 0.10834 5.2302E-05 -0.15095 -7.2871E-05 -0.042607 -2.0569E-05 482.7543495880042 67.276 0.43555 70.467 70.287 70.723 3.1914 -0.0019825 -9.6109E-05 NaN 10.074 47 32 2 NaN NaN NaN NaN 0 NaN NaN 0 68880 + 46102 17600 29073 29086 0.011475857230834663 TVLTLNITD 9 Unmodified _TVLTLNITD_ 0 0 0 L1ME3A_dup6867|chr7:77752642-77754011:-|1.193166496839302|0.0381682932388087|4.97|150.0|51|1|anti-sense L1ME3A_dup6867|chr7:77752642-77754011:-|1.193166496839302|0.0381682932388087|4.97|150.0|51|1|anti-sense L1ME3A_dup6867|chr7:77752642-77754011:-|1.193166496839302|0.0381682932388087|4.97|150.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 495.28692626953125 2 495.279315 988.544076 NaN NaN NaN NaN NaN NaN NaN 62.357 1 65.524 65.024 66.024 3.1667 0 0 0 0.2408 1 14778 14778 13.906 0 1 46103 12682 29074 29087 53083 53083 0.04934617003505082 TVLWGELEND 10 Unmodified _TVLWGELEND_ 0 0 0 REV__ENSG00000120952|ENST00000240189|PRAMEF2 REV__ENSG00000120952|ENST00000240189|PRAMEF2 MULTI-MSMS UPN47_class_I_Rep_1 2 588.28271484375 2 588.282586 1174.55062 0.39145 0.00023029 0.064218 3.7778E-05 0.45567 0.00026806 588.2826695215987 58.167 0.49227 61.604 61.342 61.834 3.437 77 30 3 0 0 0 0.55148 2 13375 13375;13468 5.2969 0.39987 1 264590 + 46104 18720 29075 29088 53084;53085 53084 -0.029674898357598067 TVLWGELEND 10 Unmodified _TVLWGELEND_ 0 0 0 REV__ENSG00000120952|ENST00000240189|PRAMEF2 REV__ENSG00000120952|ENST00000240189|PRAMEF2 MULTI-MSMS UPN47_class_I_Rep_2 3 588.2823486328125 2 588.282586 1174.55062 0.51966 0.00030571 0.074011 4.354E-05 0.59367 0.00034925 588.2826197205549 58.456 0.61855 61.738 61.41 62.029 3.2818 62 34 3 0 0 0 0.53414 1 13462 13462 7.609 0.88579 1 169170 + 46105 18720 29075 29088 53086 53086 -0.029674898357598067 TVLWYTPSS 9 Unmodified _TVLWYTPSS_ 0 0 0 Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|67|1|anti-sense Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|67|1|anti-sense Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|67|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.2661743164062 2 527.266207 1052.51786 0.16607 8.7564E-05 -1.0798 -0.00056933 -0.91371 -0.00048177 527.2661112755954 75.415 0.63174 78.728 78.431 79.063 3.3127 125 59 3 0 0 0 0.36392 1 18593 18593 10.074 0 1 129630 46106 33409 29076 29089 53087 53087 -0.006296521679587386 TVLWYTPSS 9 Unmodified _TVLWYTPSS_ 0 0 0 Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|67|1|anti-sense Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|67|1|anti-sense Tigger3b_dup6292|chr22:46937296-46938484:+|1.4522021576738982|0.0419362910871188|5.11|151.0|67|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.2662963867188 2 527.266207 1052.51786 0.21601 0.00011389 0.0039844 2.1009E-06 0.21999 0.000116 527.2660668257893 81.502 0.15176 84.886 84.776 84.928 3.3839 25 18 2 0 0 0 0.42249 1 20304 20304 6.7232 0 1 63921 46107 33409 29076 29089 53088 53088 -0.006296521679587386 TVLYKGIIST 10 Unmodified _TVLYKGIIST_ 0 0 0 L1MB7_dup13937|chr10:75797382-75798419:-|1.4834530424222023|0.0362348126521803|5.36|148.0|18|2|sense L1MB7_dup13937|chr10:75797382-75798419:-|1.4834530424222023|0.0362348126521803|5.36|148.0|18|2|sense L1MB7_dup13937|chr10:75797382-75798419:-|1.4834530424222023|0.0362348126521803|5.36|148.0|18|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.8265380859375 2 547.826432 1093.63831 0.51444 0.00028182 -0.24928 -0.00013656 0.26516 0.00014526 547.8264417102968 89.519 0.067047 93.193 93.153 93.22 3.6738 11 8 2 0 0 0 0.56374 1 22384 22384 1.1933 0 1 42397 46108 10708 29077 29090 53089 53089 0.0952375582564855 TVMHVYYYT 9 Unmodified _TVMHVYYYT_ 0 0 0 REV__L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|87|1|anti-sense REV__L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|87|1|anti-sense MSMS UPN48_class_I_Rep_1 5 588.773193359375 2 588.773342 1175.53213 NaN NaN NaN NaN NaN NaN NaN 40.719 1 44.225 43.725 44.725 3.506 0 0 0 0.39518 1 7339 7339 1.8442 0 1 + 46109 27349 29078 29091 53090 53090 -0.04861323011323293 TVMISILLH 9 Unmodified _TVMISILLH_ 0 0 0 L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|277|3|anti-sense;L1PA7_dup9859|chr11:73061020-73067491:+|21.46439024186142|0.1239268404208669|7.44|151.0|281|2|anti-sense;L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|331|3|anti-sense;L1PA7_dup6129|chr7:92892738-92899163:-|2.361470087362586|0.0104570390589107|7.82|149.0|282|2|anti-sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|398|3|anti-sense;L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|276|2|anti-sense;L1PA7_dup11329|chr14:39327563-39332634:-|3.432652457237781|0.142596950563588|4.59|151.0|246|2|anti-sense;L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|165|1|anti-sense;L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|360|3|anti-sense;L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|140|1|anti-sense L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|277|3|anti-sense L1PA8_dup1047|chr2:177368873-177374083:-|9.5924965223836|0.1431939299705347|6.07|151.0|277|3|anti-sense MSMS UPN48_class_I_Rep_3 7 513.8063354492188 2 513.804445 1025.59434 NaN NaN NaN NaN NaN NaN NaN 113.88 1 117.53 117.03 118.03 3.6511 0 0 0 0.39428 1 27094 27094 2.0598 0 1 46110 13508 29079 29092 53091 53091 0.08256448127690419 TVNLAIPPN 9 Unmodified _TVNLAIPPN_ 0 0 0 L1M5_dup46624|chr16:29123434-29124521:-|2.7532201652297763|0.4329427295217096|2.67|151.0|29|2|sense L1M5_dup46624|chr16:29123434-29124521:-|2.7532201652297763|0.4329427295217096|2.67|151.0|29|2|sense L1M5_dup46624|chr16:29123434-29124521:-|2.7532201652297763|0.4329427295217096|2.67|151.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 469.7708435058594 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 55.57 1 59.125 58.625 59.625 3.5559 0 0 0 0.38639 1 11856 11856 3.9444 0 1 46111 9177 29080 29093 53092 53092 0.0520207141452147 TVNQTKQIK 9 Unmodified _TVNQTKQIK_ 0 0 0 L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|33|3|sense L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|33|3|sense L1ME4b_dup19882|chr18:63265539-63266538:+|2.361470087362586|0.0369078332276002|6.0|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 530.3097534179688 2 530.31148 1058.60841 NaN NaN NaN NaN NaN NaN NaN 68.807 1 72.005 71.505 72.505 3.1977 0 0 0 0.38478 1 16741 16741 4.3292 0 1 46112 12908 29081 29094 53093 53093 0.08144816880303551 TVNRIRIA 8 Unmodified _TVNRIRIA_ 0 0 0 REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF MSMS UPN47_class_I_Rep_2 3 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 59.255 1 62.528 62.028 63.028 3.2731 0 0 0 0.40625 1 13779 13779 2.3027 0 1 + 46113 19372 29082 29095 53094 53094 0.1039228863688777 TVNYFLTKL 9 Unmodified _TVNYFLTKL_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|66|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|66|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|66|1|sense MSMS UPN48_class_I_Rep_1 5 549.7955932617188 2 549.813325 1097.6121 NaN NaN NaN NaN NaN NaN NaN 71.226 1 74.692 74.192 75.192 3.466 0 0 0 0.27207 1 16638 16638 12.241 2.1667 1 46114 9618 29083 29096 53095 53095 0.06719486654174034 TVNYFLTKL 9 Unmodified _TVNYFLTKL_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|66|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|66|1|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|66|1|sense MSMS UPN48_class_I_Rep_1 5 549.7954711914062 2 549.813325 1097.6121 NaN NaN NaN NaN NaN NaN NaN 71.356 1 74.822 74.322 75.322 3.466 0 0 0 0.10941 1 16678 16678 22.736 2.2827 1 46115 9618 29083 29096 53096 53096 0.06719486654174034 TVPFTARTAK 10 Unmodified _TVPFTARTAK_ 0 0 0 nc|ENSG00000157827|Q96PY5|FMNL2 nc|ENSG00000157827|Q96PY5|FMNL2 nc|ENSG00000157827|Q96PY5|FMNL2 MULTI-MSMS UPN48_class_I_Rep_1 5 546.3135986328125 2 546.314023 1090.61349 0.46585 0.0002545 -0.49771 -0.00027191 -0.031859 -1.7405E-05 546.3136228628745 39.322 0.85344 42.827 42.51 43.364 3.5048 144 83 2 0 0 0 0.56078 1 6845 6845 3.2813 1.2216 1 269230 46116 16719 29084 29097 53097 53097 0.07181120742939129 TVPHPIRY 8 Unmodified _TVPHPIRY_ 0 0 0 REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|35|2|sense REV__L1MC2_dup4172|chr10:132693742-132695886:+|1.197895747904586|0.02772405722503|5.43|151.0|35|2|sense MSMS UPN46_class_I_Rep_3 1 491.7958679199219 2 491.777077 981.5396 NaN NaN NaN NaN NaN NaN NaN 52.706 1 52.706 52.206 53.206 0 0 0 0 0.40364 1 11284 11284 5.7604 0 1 + 46117 26668 29085 29098 53098 53098 0.04809197371275786 TVPLILPK 8 Unmodified _TVPLILPK_ 0 0 0 REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 440.7993469238281 2 440.796946 879.57934 -0.40999 -0.00018072 3.1244 0.0013772 2.7145 0.0011965 440.7996653401663 28.749 0.48981 32.515 32.31 32.8 3.7662 65 41 2 0 0 0 0.82752 1 4533 4533 0.79363 0 1 93150 + 46118 22516 29086 29099 53099 53099 0.1347332432200119 TVPLILPK 8 Unmodified _TVPLILPK_ 0 0 0 REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 440.79901123046875 2 440.796946 879.57934 -0.24253 -0.00010691 1.8725 0.00082538 1.6299 0.00071847 440.7993804748441 60.616 0.74916 63.881 63.381 64.13 3.2654 89 62 2 0 0 0 0.82752 1 14149 14149 0.69038 0 1 60874 + 46119 22516 29086 29099 53100 53100 0.1347332432200119 TVPLILPK 8 Unmodified _TVPLILPK_ 0 0 0 REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 440.7999572753906 2 440.796946 879.57934 -0.33559 -0.00014793 3.1233 0.0013768 2.7877 0.0012288 440.7996352591568 54.352 0.98672 57.538 57.26 58.246 3.1856 83 58 2 0 0 0 0.82752 1 12410 12410 0.69038 0 1 104460 + 46120 22516 29086 29099 53101 53101 0.1347332432200119 TVPRKEDLY 9 Unmodified _TVPRKEDLY_ 0 0 0 chr16:30188249-30188376|33|38.3|0.57|6.06|+|0|CORO1A,None|1 chr16:30188249-30188376|33|38.3|0.57|6.06|+|0|CORO1A,None|1 chr16:30188249-30188376|33|38.3|0.57|6.06|+|0|CORO1A,None|1 MULTI-MSMS UPN47_class_I_Rep_2 3 560.8031616210938 2 560.803488 1119.59242 0.51739 0.00029015 -0.18528 -0.00010391 0.33211 0.00018625 560.8031227401572 54.546 0.59958 57.865 57.628 58.227 3.3187 44 28 2 0 0 0 0.36392 1 12393 12393 10.074 0 1 116550 46121 589 29087 29100 53102 53102 0.03741110643431966 TVPRNYLY 8 Unmodified _TVPRNYLY_ 0 0 0 REV__L1ME3A_dup10501|chr11:66088192-66088979:-|2.174490312261925|0.014931588759038|7.19|151.0|53|3|anti-sense REV__L1ME3A_dup10501|chr11:66088192-66088979:-|2.174490312261925|0.014931588759038|7.19|151.0|53|3|anti-sense MSMS UPN47_class_I_Rep_3 4 513.27392578125 2 513.274367 1024.53418 NaN NaN NaN NaN NaN NaN NaN 60.165 1 63.331 62.831 63.831 3.1651 0 0 0 0.40625 1 14109 14109 2.3027 0 1 + 46122 27978 29088 29101 53103 53103 0.02289473788800933 TVPVPPKSTAK 11 Unmodified _TVPVPPKSTAK_ 0 0 0 ENST00000560717.5_2_15:65295402-65319196:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT ENST00000560717.5_2_15:65295402-65319196:-|nuORF ENST00000560717.5_2_15:65295402-65319196:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 562.8368530273438 2 562.837331 1123.66011 0.49221 0.00027703 -2.0496 -0.0011536 -1.5574 -0.00087658 562.8361801745632 110.49 0.10522 114.16 114.1 114.2 3.669 16 13 2 0 0 0 0.65821 1 26286 26286 2.4985 0.43874 1 72096 46123 1670 29089 29102 53104 53104 0.10322560574218187 TVQGKVFER 9 Unmodified _TVQGKVFER_ 0 0 0 ENSG00000090382|ENST00000261267|LYZ ENSG00000090382|ENST00000261267|LYZ ENSG00000090382|ENST00000261267|LYZ MULTI-MSMS UPN46_class_I_Rep_3 1 532.2982788085938 2 532.298373 1062.58219 0.028732 1.5294E-05 -0.24349 -0.00012961 -0.21475 -0.00011431 532.2980842082846 27.682 0.6404 27.682 27.506 28.147 0 80 51 2 0 0 0 0.20144 2 4142 4142;4197 20.581 7.5385 1 88357 46124 1349 29090 29103 53105;53106 53105 0.053405477088290354 TVQMRPEECSS 11 Unmodified _TVQMRPEECSS_ 0 0 0 REV__ENSG00000105278|ENST00000262961|ZFR2 REV__ENSG00000105278|ENST00000262961|ZFR2 MULTI-SECPEP UPN47_class_I_Rep_3 4 633.7772216796875 2 633.776287 1265.53802 0.48558 0.00030775 0.4621 0.00029287 0.94768 0.00060062 633.7764175969817 53.597 0.24976 56.792 56.732 56.981 3.1948 27 17 2 0 0 0 22.551 1 12086 12086 0.96228 0.36078 1 92859 + 46125 18284 29091 29104 53107 53107 -0.0841259256194462 TVQPSNSITGY 11 Unmodified _TVQPSNSITGY_ 0 0 0 L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|33|2|sense L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|33|2|sense L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 583.7872314453125 2 583.788035 1165.56152 0.51953 0.0003033 -0.4319 -0.00025214 0.087625 5.1155E-05 583.7877587411388 58.403 0.60285 61.684 61.395 61.998 3.2818 53 33 2 0 0 0 0.42924 1 13572 13572 9.544 0 1 143140 46126 13794 29092 29105 53108 53108 -0.014640874614769928 TVQRIKIK 8 Unmodified _TVQRIKIK_ 0 0 0 L1MC3_dup5108|chr6:147242845-147243988:-|1.197428402762228|0.3032668860554087|1.98|151.0|36|3|sense L1MC3_dup5108|chr6:147242845-147243988:-|1.197428402762228|0.3032668860554087|1.98|151.0|36|3|sense L1MC3_dup5108|chr6:147242845-147243988:-|1.197428402762228|0.3032668860554087|1.98|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.32940673828125 2 493.329476 984.6444 -0.11878 -5.8598E-05 -0.15638 -7.7148E-05 -0.27516 -0.00013575 493.3293635152112 21.525 1.1546 24.949 24.519 25.673 3.4241 188 126 2 0 0 0 0.82752 1 2494 2494 0.79363 0 1 99396 46127 11353 29093 29106 53109 53109 0.15146318847826024 TVQRKEKDFQ 10 Unmodified _TVQRKEKDFQ_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS UPN46_class_I_Rep_3 1 640.345703125 2 639.843676 1277.6728 0.7452 0.00047681 -0.09151 -5.8552E-05 0.65369 0.00041826 639.8433241386475 95.882 0.098206 95.882 95.817 95.915 0 32 12 3 0 0 0 0.54822 1 23305 23305 5.7319 0 1 425640 46128 4298 29094 29107 53110 53110 0.04506971966452511 TVQRKEKDFQ 10 Unmodified _TVQRKEKDFQ_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS UPN46_class_I_Rep_3 1 639.8440551757812 2 639.843676 1277.6728 0.74534 0.0004769 -0.14872 -9.5155E-05 0.59662 0.00038174 639.8433572159112 103.13 0.12904 103.13 103.03 103.16 0 33 17 3 0 0 0 0.54822 1 25166 25166 5.7319 0 1 433720 46129 4298 29094 29107 53111 53111 0.04506971966452511 TVQRKEKDFQ 10 Unmodified _TVQRKEKDFQ_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS UPN47_class_I_Rep_1 2 639.8436889648438 2 639.843676 1277.6728 0.56028 0.00035849 -0.45027 -0.0002881 0.11001 7.0387E-05 639.8435882091574 91.605 0.79584 95.311 94.906 95.701 3.7053 621 112 8 0 0 0 0.54822 1 22779 22779 5.7319 0 1 35873000 46130 4298 29094 29107 53112 53112 0.04506971966452511 TVQRKEKDFQ 10 Unmodified _TVQRKEKDFQ_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS UPN47_class_I_Rep_3 4 639.8433227539062 2 639.843676 1277.6728 0.51004 0.00032635 -0.15353 -9.8233E-05 0.35652 0.00022811 639.8435052138312 92.529 0.54976 95.933 95.569 96.118 3.4034 184 77 4 0 0 0 0.54822 2 23055 23055;23082 5.7319 0 1 1387300 46131 4298 29094 29107 53113;53114 53113 0.04506971966452511 TVQRKEKDFQ 10 Unmodified _TVQRKEKDFQ_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS UPN47_class_I_Rep_3 4 639.8443603515625 2 639.843676 1277.6728 0.51484 0.00032942 -0.1814 -0.00011607 0.33344 0.00021335 639.8435366119385 98.974 0.64817 102.41 102 102.65 3.4328 382 97 6 0 0 0 0.52083 3 24415 24415;24535;24537 9.3831 0 1 4191900 46132 4298 29094 29107 53115;53116;53117 53115 0.04506971966452511 TVQRKRVVPK 10 Unmodified _TVQRKRVVPK_ 0 0 0 L1MB8_dup15763|chr20:35030420-35031234:-|1.875761120328785|0.1942920663506797|3.27|151.0|27|3|sense L1MB8_dup15763|chr20:35030420-35031234:-|1.875761120328785|0.1942920663506797|3.27|151.0|27|3|sense L1MB8_dup15763|chr20:35030420-35031234:-|1.875761120328785|0.1942920663506797|3.27|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 404.26416015625 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 63.702 1 63.702 63.202 64.202 0 0 0 0 0.53105 1 14314 14314 1.3296 0 1 46133 10964 29095 29108 53118 53118 0.1704815557927759 TVQRKVKKF 9 Unmodified _TVQRKVKKF_ 0 0 0 REV__L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|11|1|sense REV__L1ME3B_dup6374|chr14:50209769-50211039:+|2.1984727109229847|0.0286915109483663|6.26|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 567.3638916015625 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 57.348 1 60.863 60.363 61.363 3.5142 0 0 0 0.39518 1 12397 12397 1.8442 1.1539 1 + 46134 28072 29096 29109 53119 53119 0.14701679284939928 TVQRVVRL 8 Unmodified _TVQRVVRL_ 0 0 0 REV__ENSG00000129437|ENST00000650543|KLK14 REV__ENSG00000129437|ENST00000650543|KLK14 MULTI-MSMS UPN47_class_I_Rep_1 2 486.31744384765625 2 485.811451 969.608348 0.11413 5.5447E-05 2.7448 0.0013335 2.8589 0.0013889 485.8116455042829 65.243 0.57674 68.599 68.311 68.888 3.3557 48 37 2 0 0 0 0.82752 1 15518 15518 2.5775 0 1 161730 + 46135 18923 29097 29110 53120 53120 0.12232861670997863 TVQRVVRL 8 Unmodified _TVQRVVRL_ 0 0 0 REV__ENSG00000129437|ENST00000650543|KLK14 REV__ENSG00000129437|ENST00000650543|KLK14 MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.635 1 73.918 73.418 74.418 3.2828 0 0 0 0.40746 1 17221 17221 0.69038 0 1 + 46136 18923 29097 29110 53121 53121 0.12232861670997863 TVQRVVRL 8 Unmodified _TVQRVVRL_ 0 0 0 REV__ENSG00000129437|ENST00000650543|KLK14 REV__ENSG00000129437|ENST00000650543|KLK14 MULTI-MSMS UPN47_class_I_Rep_3 4 485.8117980957031 2 485.811451 969.608348 0.13559 6.5872E-05 0.632 0.00030703 0.76759 0.0003729 485.81171443736446 65.512 0.4678 68.692 68.672 69.14 3.1795 43 27 2 0 0 0 0.82752 1 15854 15854 0.69038 0 1 4491500 + 46137 18923 29097 29110 53122 53122 0.12232861670997863 TVQRVVRL 8 Unmodified _TVQRVVRL_ 0 0 0 REV__ENSG00000129437|ENST00000650543|KLK14 REV__ENSG00000129437|ENST00000650543|KLK14 MSMS UPN47_class_I_Rep_3 4 485.8111572265625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 66.486 1 69.671 69.171 70.171 3.1853 0 0 0 0.40746 1 16039 16039 0.69038 0 1 + 46138 18923 29097 29110 53123 53123 0.12232861670997863 TVQRVVRL 8 Unmodified _TVQRVVRL_ 0 0 0 REV__ENSG00000129437|ENST00000650543|KLK14 REV__ENSG00000129437|ENST00000650543|KLK14 MSMS UPN48_class_I_Rep_1 5 485.8118896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.807 1 76.28 75.78 76.78 3.4732 0 0 0 0.40746 1 17113 17113 0.69038 0 1 + 46139 18923 29097 29110 53124 53124 0.12232861670997863 TVREQDQSF 9 Unmodified _TVREQDQSF_ 0 0 0 nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;ENST00000342222.6_1_8:42151073-42188494:+|nuORF nc|ENSG00000104365|O14920-4|IKBKB nc|ENSG00000104365|O14920-4|IKBKB MULTI-MSMS UPN46_class_I_Rep_3 1 555.2637939453125 2 555.264727 1108.5149 0.24992 0.00013877 -0.08497 -4.7181E-05 0.16495 9.1591E-05 555.264649223914 34.075 0.68026 34.075 33.906 34.586 0 86 49 2 0 0 0 0.33908 1 6133 6133 11.495 0 1 198740 46140 1686 29098 29111 53125 53125 -0.03501527292769424 TVRFHPLL 8 Unmodified _TVRFHPLL_ 0 0 0 REV__THE1B-int_dup924|chr3:172241765-172243314:-|3.258176556978565|0.0475096625370865|6.1|151.0|99|3|anti-sense REV__THE1B-int_dup924|chr3:172241765-172243314:-|3.258176556978565|0.0475096625370865|6.1|151.0|99|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 491.7962951660156 2 491.795269 981.575986 0.34668 0.00017049 1.3042 0.00064139 1.6509 0.00081189 491.79581957284006 59.568 0.52794 63.054 62.743 63.271 3.4868 56 37 2 0 0 0 0.82752 1 13058 13058 7.2892 0 1 189380 + 46141 32276 29099 29112 53126 53126 0.08446074267999393 TVRHATAL 8 Unmodified _TVRHATAL_ 0 0 0 AluJb_dup32553|chr4:139034591-139034859:-|1.5233738181713523|0.0749646683429614|4.34|151.0|5|1|sense AluJb_dup32553|chr4:139034591-139034859:-|1.5233738181713523|0.0749646683429614|4.34|151.0|5|1|sense AluJb_dup32553|chr4:139034591-139034859:-|1.5233738181713523|0.0749646683429614|4.34|151.0|5|1|sense MSMS UPN47_class_I_Rep_3 4 435.2397766113281 2 434.753601 867.49265 NaN NaN NaN NaN NaN NaN NaN 22.264 1 25.614 25.114 26.114 3.3496 0 0 0 0.40798 1 2634 2634 0 0 1 46142 44 29100 29113 53127 53127 0.05360337820116001 TVRHIPVF 8 Unmodified _TVRHIPVF_ 0 0 0 Tigger17a_dup176|chr2:28916664-28917335:-|1.3840340051618931|0.0919709138168309|3.91|151.0|46|3|anti-sense Tigger17a_dup176|chr2:28916664-28917335:-|1.3840340051618931|0.0919709138168309|3.91|151.0|46|3|anti-sense Tigger17a_dup176|chr2:28916664-28917335:-|1.3840340051618931|0.0919709138168309|3.91|151.0|46|3|anti-sense MSMS UPN46_class_I_Rep_3 1 484.7877197265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 41.994 1 41.994 41.494 42.494 0 0 0 0 0.40604 1 8278 8278 2.5775 0 1 46143 33252 29101 29114 53128 53128 0.07525787750932977 TVRIRINV 8 Unmodified _TVRIRINV_ 0 0 0 REV__L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|235|1|anti-sense REV__L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|235|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 84.215 1 87.638 87.138 88.138 3.4232 0 0 0 0.40746 1 21004 21004 0.69038 0 1 + 46144 30063 29102 29115 53129 53129 0.12232861670975126 TVRKTEITL 9 Unmodified _TVRKTEITL_ 0 0 0 LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|31|3|anti-sense LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|31|3|anti-sense LTR50_dup1763|chr11:43479635-43480162:-|3.309912200776948|0.1394356858914764|4.57|151.0|31|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.820068359375 2 530.821681 1059.62881 0.34083 0.00018092 -1.0312 -0.00054739 -0.69039 -0.00036647 530.8211194802154 73.33 0.42819 76.716 76.324 76.753 3.3861 36 28 2 0 0 0 0.48643 1 17932 17932 2.0598 0 1 149530 46145 15672 29103 29116 53130 53130 0.10137987540110771 TVRLWPLRGR 10 Unmodified _TVRLWPLRGR_ 0 0 0 REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|353|2|anti-sense REV__L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|353|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 627.3836669921875 2 627.383106 1252.75166 0.51259 0.00032159 -1.0833 -0.00067966 -0.57073 -0.00035806 627.3825715440909 103.83 0.61166 107.35 107.01 107.62 3.5205 169 92 3 0 0 0 0.56033 1 25451 25451 3.5965 0 1 47057000 + 46146 29112 29104 29117 53131 53131 0.13539288782044423 TVRMYQQY 8 Unmodified _TVRMYQQY_ 0 0 0 REV__L1MB7_dup1947|chr2:26115054-26115770:+|4.413912669157044|0.1888326915856552|4.55|151.0|48|2|anti-sense REV__L1MB7_dup1947|chr2:26115054-26115770:+|4.413912669157044|0.1888326915856552|4.55|151.0|48|2|anti-sense MSMS UPN47_class_I_Rep_3 4 544.7653198242188 2 544.763309 1087.51206 NaN NaN NaN NaN NaN NaN NaN 41.065 1 44.302 43.802 44.802 3.2372 0 0 0 0.40643 1 8293 8293 2.0598 0.21551 1 + 46147 26196 29105 29118 53132 53132 -0.028190739512638174 TVRRHLQAL 9 Unmodified _TVRRHLQAL_ 0 0 0 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 MSMS UPN46_class_I_Rep_3 1 547.7387084960938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 115.68 1 115.68 115.18 116.18 0 0 0 0 0.4007 1 28616 28616 0.52476 0 1 46148 16829 29106 29119 53133 53133 0.10899051448268438 TVRRKRKAKL 10 Unmodified _TVRRKRKAKL_ 0 0 0 REV__nc|ENSG00000138778|Q02224-3|CENPE REV__nc|ENSG00000138778|Q02224-3|CENPE MSMS UPN48_class_I_Rep_1 5 628.4265747070312 2 628.425305 1254.83606 NaN NaN NaN NaN NaN NaN NaN 61.154 1 64.622 64.122 65.122 3.4678 0 0 0 0.53105 1 13584 13584 0.40072 0.093686 1 + 46149 19294 29107 29120 53134 53134 0.21883239598832915 TVRRPTRP 8 Unmodified _TVRRPTRP_ 0 0 0 REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|279|2|anti-sense REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|279|2|anti-sense MSMS UPN48_class_I_Rep_2 6 491.7960205078125 2 491.798875 981.583196 NaN NaN NaN NaN NaN NaN NaN 67.986 1 71.494 70.994 71.994 3.5083 0 0 0 0.4044 1 15650 15650 4.756 0 1 + 46150 23558 29108 29121 53135 53135 0.09166806868404365 TVRRTERM 8 Unmodified _TVRRTERM_ 0 0 0 ENST00000361479.9_1_13:20208000-20208090:+|nuORF ENST00000361479.9_1_13:20208000-20208090:+|nuORF ENST00000361479.9_1_13:20208000-20208090:+|nuORF MSMS UPN47_class_I_Rep_2 3 524.7889404296875 2 524.78765 1047.56075 NaN NaN NaN NaN NaN NaN NaN 35.515 1 38.927 38.427 39.427 3.4114 0 0 0 0.40659 1 6557 6557 1.8442 0 1 46151 6330 29109 29122 53136 53136 0.03886839408482956 TVRSMKLR 8 Unmodified _TVRSMKLR_ 0 0 0 MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|75|1|anti-sense MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|75|1|anti-sense MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|75|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.3010559082031 2 495.797486 989.580419 0.12362 6.1291E-05 -1.6458 -0.00081599 -1.5222 -0.0007547 495.79613013097094 68.47 0.2793 71.835 71.713 71.992 3.3646 32 20 2 0 0 0 0.82752 1 16565 16565 5.2307 0 1 192250 46152 15768 29110 29123 53137 53137 0.0852121541923907 TVRSMKLR 8 Unmodified _TVRSMKLR_ 0 0 0 MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|75|1|anti-sense MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|75|1|anti-sense MER110-int_dup281|chr13:26295911-26297770:-|1.0223021170258195|0.0142277004396504|6.17|151.0|75|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 495.797486 989.580419 0.20775 0.000103 -1.003 -0.00049729 -0.79527 -0.00039429 495.79600570471837 68.622 0.15645 71.891 71.823 71.98 3.2696 0.028127 0.00020802 NaN 5.2307 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 81101 46153 15768 29110 29123 0.0852121541923907 TVRSPVKR 8 Unmodified _TVRSPVKR_ 0 0 0 REV__ENSG00000148341|ENST00000372564|SH3GLB2 REV__ENSG00000148341|ENST00000372564|SH3GLB2 MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.571 1 64.83 64.33 65.33 3.2594 0 0 0 0.40659 1 14483 14483 1.8442 0 1 + 46154 19585 29111 29124 53138 53138 0.10392288636899139 TVRTHGYR 8 Unmodified _TVRTHGYR_ 0 0 0 L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|56|1|sense;L1PA4_dup7375|chrX:79389545-79392707:+|3.6622301924309513|0.0821642685551314|5.48|151.0|86|3|sense L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|56|1|sense L1PA7_dup10413|chr12:62107993-62114447:-|1.4020087268152015|0.0435411121825889|5.01|151.0|56|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 495.2667541503906 2 495.267407 988.520262 -0.091662 -4.5397E-05 -0.84974 -0.00042085 -0.9414 -0.00046624 495.266785384593 42.424 0.52937 45.785 45.609 46.138 3.3611 63 37 2 0 0 0 0.82752 1 8713 8713 4.3292 0.38484 1 88924 46155 14388 29112 29125 53139 53139 0.025542410803723214 TVRYKVLL 8 Unmodified _TVRYKVLL_ 0 0 0 REV__ENST00000396398.7_1_22:42454910-42454976:-|nuORF REV__ENST00000396398.7_1_22:42454910-42454976:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 496.31976318359375 2 496.318577 990.622602 0.20823 0.00010335 0.091866 4.5595E-05 0.3001 0.00014894 496.3185267617958 43.142 0.76676 46.904 46.635 47.402 3.7617 93 60 2 0 0 0 0.82752 1 8043 8043 8.5933 0 1 142600 + 46156 22123 29113 29126 53140 53140 0.12691514099276446 TVSEILVEV 9 Unmodified _TVSEILVEV_ 0 0 0 THE1B-int_dup1805|chr6:83031309-83032657:+|1.293623728641526|0.0434347729948632|4.9|150.0|55|1|anti-sense THE1B-int_dup1805|chr6:83031309-83032657:+|1.293623728641526|0.0434347729948632|4.9|150.0|55|1|anti-sense THE1B-int_dup1805|chr6:83031309-83032657:+|1.293623728641526|0.0434347729948632|4.9|150.0|55|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 495.32330322265625 2 494.78169 987.548827 0.34043 0.00016844 -0.14514 -7.1811E-05 0.1953 9.6629E-05 494.78153266060383 58.889 0.51928 62.171 61.928 62.447 3.2818 43 32 2 0 0 0 0.095427 1 13682 13682 20.454 0 1 128630 46157 32898 29114 29127 53141 53141 0.05455501146286679 TVSEILVEV 9 Unmodified _TVSEILVEV_ 0 0 0 THE1B-int_dup1805|chr6:83031309-83032657:+|1.293623728641526|0.0434347729948632|4.9|150.0|55|1|anti-sense THE1B-int_dup1805|chr6:83031309-83032657:+|1.293623728641526|0.0434347729948632|4.9|150.0|55|1|anti-sense THE1B-int_dup1805|chr6:83031309-83032657:+|1.293623728641526|0.0434347729948632|4.9|150.0|55|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.7815856933594 2 494.78169 987.548827 0.11796 5.8363E-05 0.40728 0.00020151 0.52524 0.00025988 494.7815276449987 58.957 0.4768 62.123 61.893 62.37 3.1658 56 27 3 0 0 0 0.15122 1 13726 13726 25.399 4.9457 1 96003 46158 32898 29114 29127 53142 53142 0.05455501146286679 TVSFEEQKF 9 Unmodified _TVSFEEQKF_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.7743530273438 2 557.774396 1113.53424 0.52614 0.00029347 -0.24372 -0.00013594 0.28242 0.00015753 557.7741493799687 68.203 0.64259 71.655 71.238 71.881 3.4517 96 53 2 0 0 0 0.23293 3 15664 15664;15701;15737 18.146 0 1 326120 46159 12202 29115 29128 53143;53144;53145 53143 -0.017985710018592727 TVSFEEQKF 9 Unmodified _TVSFEEQKF_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.774658203125 2 557.774396 1113.53424 0.50672 0.00028264 -0.28609 -0.00015957 0.22063 0.00012306 557.774109108157 67.957 0.66145 71.465 71.141 71.802 3.5083 86 57 3 0 0 0 0.11683 2 15671 15592;15671 30.637 0 1 449910 46160 12202 29115 29128 53146;53147 53147 -0.017985710018592727 TVSFEEQKF 9 Unmodified _TVSFEEQKF_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 558.2957763671875 2 557.774396 1113.53424 0.50672 0.00028264 -0.28609 -0.00015957 0.22063 0.00012306 557.774109108157 67.957 0.66145 71.465 71.141 71.802 3.5083 86 57 3 0 0 0 0.11959 1 15687 15687 8.7454 0 1 449910 46161 12202 29115 29128 53148 53148 -0.017985710018592727 TVSFEEQKF 9 Unmodified _TVSFEEQKF_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 557.774396 1113.53424 0.38517 0.00021484 -1.6843 -0.00093944 -1.2991 -0.0007246 557.7731329571596 71.53 0.059914 71.53 71.512 71.572 0 -0.01998 -0.0015717 NaN 30.637 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 43310 46162 12202 29115 29128 -0.017985710018592727 TVSFEEQKF 9 Unmodified _TVSFEEQKF_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|166|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 557.774396 1113.53424 0.52614 0.00029347 -0.24372 -0.00013594 0.28242 0.00015753 557.7741493799687 68.203 0.64259 71.655 71.238 71.881 3.4517 0.10493 3.5268E-05 NaN 30.637 96 53 2 NaN NaN NaN NaN 0 NaN NaN 0 326120 46163 12202 29115 29128 -0.017985710018592727 TVSGEIEEMY 10 Unmodified _TVSGEIEEMY_ 0 0 0 REV__ENSG00000172315|ENST00000372114|TP53RK REV__ENSG00000172315|ENST00000372114|TP53RK MULTI-MSMS UPN47_class_I_Rep_1 2 579.2553100585938 2 579.255179 1156.49581 0.027992 1.6215E-05 0.50645 0.00029336 0.53444 0.00030958 579.2551062908807 42.869 0.75427 46.556 46.283 47.038 3.6875 119 53 3 0 0 0 0.54822 2 8790 8790;8828 5.7319 1.7875 1 205910 + 46164 20443 29116 29129 53149;53150 53149 -0.07618244698687704 TVSGEIEEMY 10 Unmodified _TVSGEIEEMY_ 0 0 0 REV__ENSG00000172315|ENST00000372114|TP53RK REV__ENSG00000172315|ENST00000372114|TP53RK MULTI-MSMS UPN47_class_I_Rep_3 4 579.2552490234375 2 579.255179 1156.49581 0.13684 7.9265E-05 0.080429 4.6589E-05 0.21727 0.00012585 579.2552031639999 43.322 1.0006 46.564 46.24 47.241 3.2419 103 60 2 0 0 0 0.54822 2 8936 8936;9007 5.7319 3.2813 1 184870 + 46165 20443 29116 29129 53151;53152 53151 -0.07618244698687704 TVSGTVPVVP 10 Unmodified _TVSGTVPVVP_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MSMS UPN46_class_I_Rep_3 1 478.2757568359375 2 478.276575 954.538597 NaN NaN NaN NaN NaN NaN NaN 16.536 1 16.536 16.036 17.036 0 0 0 0 0.53105 1 1152 1152 1.4819 0 1 46166 5313 29117 29130 53153 53153 0.0595093821170849 TVSHHRLFQ 9 Unmodified _TVSHHRLFQ_ 0 0 0 REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|103|3|sense REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|103|3|sense MSMS UPN48_class_I_Rep_1 5 562.7430419921875 2 562.801614 1123.58868 NaN NaN NaN NaN NaN NaN NaN 113.27 1 116.9 116.4 117.4 3.6314 0 0 0 0.39428 1 27510 27510 2.0598 0 1 + 46167 24823 29118 29131 53154 53154 0.03182485660204293 TVSIVLSFAD 10 Unmodified _TVSIVLSFAD_ 0 0 0 L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|126|2|anti-sense L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|126|2|anti-sense L1MC1_dup949|chr1:226260945-226263460:+|1.0697020473747896|0.076761770304938|3.8|151.0|126|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.2868041992188 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 96.011 1 96.011 95.511 96.511 0 0 0 0 0.53105 1 23331 23331 1.4819 0 1 46168 11215 29119 29132 53155 53155 0.03646903520575506 TVSLRLTTTK 10 Unmodified _TVSLRLTTTK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 560.3406982421875 2 560.340238 1118.66592 0.63476 0.00035568 -0.13083 -7.3311E-05 0.50392 0.00028237 560.3402110539456 95.232 0.097343 98.708 98.632 98.729 3.4753 26 14 2 0 0 0 0.56543 1 23436 23436 0 0 1 134730 + 46169 30594 29120 29133 53156 53156 0.11133659085862746 TVSLRLTTTK 10 Unmodified _TVSLRLTTTK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 560.340087890625 2 560.340238 1118.66592 NaN NaN NaN NaN NaN NaN NaN 95.39 1 98.865 98.365 99.365 3.4753 0 0 0 0.53105 1 23476 23476 0 0 1 + 46170 30594 29120 29133 53157 53157 0.11133659085862746 TVSLRLTTTK 10 Unmodified _TVSLRLTTTK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 560.3399658203125 2 560.340238 1118.66592 NaN NaN NaN NaN NaN NaN NaN 95.572 1 99.048 98.548 99.548 3.4753 0 0 0 0.53105 1 23520 23520 0 0 1 + 46171 30594 29120 29133 53158 53158 0.11133659085862746 TVSLRLTTTK 10 Unmodified _TVSLRLTTTK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|15|2|sense MSMS UPN48_class_I_Rep_3 7 560.3406372070312 2 560.340238 1118.66592 NaN NaN NaN NaN NaN NaN NaN 95.357 1 99.265 98.765 99.765 3.9084 0 0 0 0.53105 1 22604 22604 0 0 1 + 46172 30594 29120 29133 53159 53159 0.11133659085862746 TVSLVRYL 8 Unmodified _TVSLVRYL_ 0 0 0 REV__ENSG00000197056|ENST00000359858|ZMYM1 REV__ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS UPN48_class_I_Rep_1 5 475.787109375 2 475.78711 949.559667 0.15887 7.5588E-05 -0.075649 -3.5993E-05 0.083221 3.9595E-05 475.7869982835228 55.281 0.94331 58.789 58.374 59.317 3.5082 153 59 3 0 0 0 0.82752 1 11936 11936 7.2892 0 1 962230 + 46173 21066 29121 29134 53160 53160 0.08286948311229025 TVSLVRYL 8 Unmodified _TVSLVRYL_ 0 0 0 REV__ENSG00000197056|ENST00000359858|ZMYM1 REV__ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS UPN48_class_I_Rep_3 7 475.7878723144531 2 475.78711 949.559667 0.088401 4.206E-05 0.047355 2.2531E-05 0.13576 6.4591E-05 475.7870465516694 55.059 1.1188 58.628 58.277 59.396 3.5694 145 66 3 0 0 0 0.82752 1 11820 11820 7.2892 0 1 1422400 + 46174 21066 29121 29134 53161 53161 0.08286948311229025 TVSLWEEF 8 Unmodified _TVSLWEEF_ 0 0 0 ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS MULTI-MSMS UPN48_class_I_Rep_3 7 505.7453918457031 2 505.745108 1009.47566 0.31017 0.00015687 -0.50096 -0.00025336 -0.1908 -9.6494E-05 505.74494092385737 65.981 0.14799 69.489 69.391 69.539 3.5077 13 9 2 0 0 0 0.82752 1 14953 14953 8.5933 0.68312 1 44592 46175 4658 29122 29135 53162 53162 -0.02869627576330913 TVSNSQQAY 9 Unmodified _TVSNSQQAY_ 0 0 0 ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000166913|ENST00000353703|YWHAB ENST00000479421.5_2_20:43531717-43535076:+|nuORF ENST00000479421.5_2_20:43531717-43535076:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 499.23284912109375 2 499.232896 996.451239 -0.071984 -3.5937E-05 -0.24781 -0.00012372 -0.3198 -0.00015965 499.23258835611324 24.547 0.54196 24.547 24.335 24.877 0 71 56 2 0 0 0 0.097406 2 3264 3233;3264 34.402 3.7652 1 60335 46176 4274 29123 29136 53163;53164 53164 -0.04712887729863269 TVSRLPALL 9 Unmodified _TVSRLPALL_ 0 0 0 REV__ENST00000551357.2_1_12:113918017-113918194:+|nuORF REV__ENST00000551357.2_1_12:113918017-113918194:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 485.30816650390625 2 485.30821 968.601866 0.12803 6.2136E-05 -0.041782 -2.0277E-05 0.086252 4.1859E-05 485.3080585201397 48.687 1.1055 52.211 51.815 52.92 3.5239 199 80 4 0 0 0 0.11683 1 9866 9866 30.637 0 1 1127400 + 46177 22959 29124 29137 53165 53165 0.11630923719599195 TVSRPIVIY 9 Unmodified _TVSRPIVIY_ 0 0 0 REV__L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|33|2|sense REV__L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|33|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 524.3082885742188 2 524.313492 1046.61243 0.025159 1.3191E-05 3.8958 0.0020426 3.9209 0.0020558 524.31575491124 69.971 0.028183 73.247 73.231 73.26 3.2761 4 2 2 0 0 0 0.095427 1 17018 17018 20.454 0 1 48631 + 46178 27598 29125 29138 53166 53166 0.09098906374038052 TVTARSYL 8 Unmodified _TVTARSYL_ 0 0 0 REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|2|1|sense REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 455.75323486328125 2 455.753267 909.491981 0.10246 4.6695E-05 0.45968 0.0002095 0.56214 0.0002562 455.75311908064003 49.284 0.48355 53.001 52.76 53.243 3.7175 37 33 2 0 0 0 0.82752 1 9905 9905 5.2307 0 1 81732 + 46179 25046 29126 29139 53167 53167 0.03361498380422745 TVTARSYL 8 Unmodified _TVTARSYL_ 0 0 0 REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|2|1|sense REV__L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 455.753267 909.491981 0.022789 1.0386E-05 -0.36293 -0.00016541 -0.34014 -0.00015502 455.75333594637283 49.246 0.0667 52.77 52.743 52.809 3.5239 -0.11593 -0.00058689 NaN 5.2307 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 19269 + 46180 25046 29126 29139 0.03361498380422745 TVTIYQKLK 9 Unmodified _TVTIYQKLK_ 0 0 0 L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense MSMS UPN46_class_I_Rep_3 1 547.33349609375 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 87.758 1 87.758 87.258 88.258 0 0 0 0 0.39428 1 21047 21047 2.0598 0 1 46181 12386 29127 29140 53168 53168 0.11167462062553568 TVTIYQKLK 9 Unmodified _TVTIYQKLK_ 0 0 0 L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense MSMS UPN48_class_I_Rep_1 5 547.3331909179688 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 90.227 1 93.852 93.352 94.352 3.6255 0 0 0 0.39428 1 21686 21686 2.0598 0 1 46182 12386 29127 29140 53169 53169 0.11167462062553568 TVTIYQKLK 9 Unmodified _TVTIYQKLK_ 0 0 0 L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 547.3453369140625 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 105.58 1 109.27 108.77 109.77 3.6901 0 0 0 0.39428 1 24975 24975 2.0598 0 1 46183 12386 29127 29140 53170 53170 0.11167462062553568 TVTIYQKLK 9 Unmodified _TVTIYQKLK_ 0 0 0 L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense L1ME1_dup30357|chr21:37437587-37439453:-|3.082736280833566|0.0401696602241038|6.26|151.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 547.3323364257812 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 106.83 1 110.51 110.01 111.01 3.6783 0 0 0 0.39428 1 25248 25248 2.0598 0 1 46184 12386 29127 29140 53171 53171 0.11167462062553568 TVTKGLYVK 9 Unmodified _TVTKGLYVK_ 0 0 0 REV__ENST00000454171.1_1_7:84657519-84657798:+|nuORF REV__ENST00000454171.1_1_7:84657519-84657798:+|nuORF MSMS UPN46_class_I_Rep_3 1 504.80810546875 2 504.808042 1007.60153 NaN NaN NaN NaN NaN NaN NaN 31.483 1 31.483 30.983 31.983 0 0 0 0 0.39518 1 5266 5266 1.8442 0 1 + 46185 22399 29128 29141 53172 53172 0.09803503999751229 TVTLEAKRQ 9 Unmodified _TVTLEAKRQ_ 0 0 0 REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 523.3033447265625 2 523.303655 1044.59276 0.32619 0.00017069 -0.5547 -0.00029028 -0.22852 -0.00011958 523.3032355809037 77.798 0.98449 81.227 80.525 81.509 3.4289 147 91 2 0 0 0 0.48846 1 19296 19296 1.8442 0.36234 1 203310 + 46186 22866 29129 29142 53173 53173 0.07224530363282611 TVTLEAKRQ 9 Unmodified _TVTLEAKRQ_ 0 0 0 REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 523.303655 1044.59276 0.31583 0.00016528 -0.24921 -0.00013041 0.066624 3.4865E-05 523.3033305061069 77.339 1.0041 80.861 80.424 81.428 3.5221 -0.1213 0.00010051 NaN 1.8442 120 97 2 NaN NaN NaN NaN 0 NaN NaN 0 167510 + 46187 22866 29129 29142 0.07224530363282611 TVTLEAKRQ 9 Unmodified _TVTLEAKRQ_ 0 0 0 REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 523.303655 1044.59276 0.3781 0.00019786 -0.18651 -9.7604E-05 0.19158 0.00010026 523.3033786877409 77.221 1.2339 80.832 80.389 81.623 3.6116 -0.15003 0.00016613 NaN 1.8442 174 121 2 NaN NaN NaN NaN 0 NaN NaN 0 126020 + 46188 22866 29129 29142 0.07224530363282611 TVTLEAKRQ 9 Unmodified _TVTLEAKRQ_ 0 0 0 REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF REV__ENST00000532926.5_1_11:7598800-7674592:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 523.303655 1044.59276 0.46175 0.00024164 -0.42709 -0.0002235 0.034655 1.8135E-05 523.3033120640486 77.491 0.93759 81.092 80.53 81.468 3.6016 0.10977 -8.5665E-05 NaN 1.8442 149 81 2 NaN NaN NaN NaN 0 NaN NaN 0 216330 + 46189 22866 29129 29142 0.07224530363282611 TVTLKAPQVPL 11 Unmodified _TVTLKAPQVPL_ 0 0 0 REV__nc|ENSG00000291154|O95744|PMS2P2 REV__nc|ENSG00000291154|O95744|PMS2P2 MSMS UPN48_class_I_Rep_3 7 583.8595581054688 2 583.860806 1165.70706 NaN NaN NaN NaN NaN NaN NaN 89.626 1 93.455 92.955 93.955 3.8293 0 0 0 0.38417 1 21284 21284 1.1933 0.66858 1 + 46190 32135 29130 29143 53174 53174 0.1308342012534922 TVTLLAPPSRP 11 Unmodified _TVTLLAPPSRP_ 0 0 0 REV__ENST00000572574.5_1_16:3108602-3109024:-|nuORF REV__ENST00000572574.5_1_16:3108602-3109024:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 576.342529296875 2 576.342781 1150.67101 0.40262 0.00023204 0.03741 2.1561E-05 0.44003 0.00025361 576.3424930112293 107.88 0.39231 111.51 111.42 111.81 3.6313 99 34 5 0 0 0 0.48412 1 26077 26077 8.1555 0 1 23796000 + 46191 23095 29131 29144 53175 53175 0.10169962948521061 TVTLLKKQKL 10 Unmodified _TVTLLKKQKL_ 0 0 0 AluSx1_dup38141|chr6:109375335-109375646:+|2.797028458075789|0.4469790755198498|2.65|151.0|8|2|sense AluSx1_dup38141|chr6:109375335-109375646:+|2.797028458075789|0.4469790755198498|2.65|151.0|8|2|sense AluSx1_dup38141|chr6:109375335-109375646:+|2.797028458075789|0.4469790755198498|2.65|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3928833007812 2 586.392273 1170.76999 0.40758 0.000239 0.46147 0.0002706 0.86904 0.0005096 586.3924306672907 108.28 0.28527 111.91 111.84 112.12 3.6313 39 22 3 0 0 0 0.56486 1 26255 26255 0.40072 0 1 3613800 46192 317 29132 29145 53176 53176 0.19143985913410688 TVTLQSLGV 9 Unmodified _TVTLQSLGV_ 0 0 0 REV__AluJo_dup3868|chr1:113953946-113954262:-|1.1187455828972142|0.0653476098883182|4.1|151.0|27|3|anti-sense REV__AluJo_dup3868|chr1:113953946-113954262:-|1.1187455828972142|0.0653476098883182|4.1|151.0|27|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.25482177734375 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 72.64 1 72.64 72.14 73.14 0 0 0 0 0.39428 1 16798 16798 2.0598 0 1 + 46193 16995 29133 29146 53177 53177 0.06134651694674176 TVTVPRRK 8 Unmodified _TVTVPRRK_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENST00000415664.2_21:10987833-11013471:-|nuORF ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MSMS UPN47_class_I_Rep_1 2 478.8044738769531 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 63.934 1 67.29 66.79 67.79 3.3557 0 0 0 0.40643 1 15161 15161 2.0598 0 1 46194 942 29134 29147 53178 53178 0.11312575153942817 TVTYLLYK 8 Unmodified _TVTYLLYK_ 0 0 0 Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|81|3|anti-sense Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|81|3|anti-sense Tigger3b_dup5747|chr17:51027517-51028704:+|1.1383923121305275|0.011490151124113|6.63|151.0|81|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.7897644042969 2 500.789318 999.564084 0.31069 0.00015559 0.067444 3.3775E-05 0.37813 0.00018936 500.78942129348025 92.716 0.16802 92.716 92.64 92.808 0 24 18 2 0 0 0 0.82752 1 22443 22443 2.3027 0 1 329960 46195 33403 29135 29148 53179 53179 0.06428412734146605 TVVASPRTT 9 Unmodified _TVVASPRTT_ 0 0 0 REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19 REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS UPN48_class_I_Rep_1 5 466.2774963378906 2 466.263999 930.513445 NaN NaN NaN NaN NaN NaN NaN 107.73 1 111.36 110.86 111.86 3.6313 0 0 0 0.31276 1 25977 25977 10.074 0 1 + 46196 21222 29136 29149 53180 53180 0.04540883409140406 TVVPDVVVR 9 Unmodified _TVVPDVVVR_ 0 0 0 REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF MSMS UPN47_class_I_Rep_1 2 492.31048583984375 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.091 1 60.548 60.048 61.048 3.4572 0 0 0 0.31276 1 13088 13088 10.074 2.7847 1 + 46197 19536 29137 29150 53181 53181 0.08914333339942004 TVVPDVVVR 9 Unmodified _TVVPDVVVR_ 0 0 0 REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF MSMS UPN47_class_I_Rep_2 3 492.31024169921875 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.317 1 60.608 60.108 61.108 3.2912 0 0 0 0.2408 1 13188 13188 13.906 3.0821 1 + 46198 19536 29137 29150 53182 53182 0.08914333339942004 TVVPDVVVR 9 Unmodified _TVVPDVVVR_ 0 0 0 REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF MSMS UPN47_class_I_Rep_3 4 492.3104553222656 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.649 1 60.817 60.317 61.317 3.1681 0 0 0 0.31276 1 13337 13337 10.074 0.6908 1 + 46199 19536 29137 29150 53183 53183 0.08914333339942004 TVVPDVVVR 9 Unmodified _TVVPDVVVR_ 0 0 0 REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF REV__ENST00000479165.1_1_6:79650412-79665440:-|nuORF MSMS UPN47_class_I_Rep_3 4 492.3105163574219 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 57.774 1 60.942 60.442 61.442 3.1681 0 0 0 0.31276 1 13375 13375 10.074 2.7847 1 + 46200 19536 29137 29150 53184 53184 0.08914333339942004 TVVPTTSITL 10 Unmodified _TVVPTTSITL_ 0 0 0 REV__Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|141|3|anti-sense REV__Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|141|3|anti-sense MSMS UPN46_class_I_Rep_3 1 516.3027954101562 2 516.30279 1030.59103 NaN NaN NaN NaN NaN NaN NaN 22.206 1 22.206 21.706 22.706 0 0 0 0 0.53105 1 2601 2601 6.2058 1.8765 1 + 46201 32497 29138 29151 53185 53185 0.07695476554658853 TVVRGARF 8 Unmodified _TVVRGARF_ 0 0 0 REV__L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|341|3|anti-sense REV__L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|341|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 452.7579040527344 2 453.269419 904.524284 -0.42898 -0.00019444 -2.3011 -0.001043 -2.7301 -0.0012375 453.26819512985287 16.447 0.21214 19.969 19.881 20.093 3.5224 31 24 2 0 0 0 0.72333 1 1077 1077 2.3027 0 1 30017 + 46202 29627 29139 29152 53186 53186 0.0682033057408944 TVVRYIVIGFV 11 Unmodified _TVVRYIVIGFV_ 0 0 0 REV__nc|ENSG00000151572|Q32M45-3|ANO4 REV__nc|ENSG00000151572|Q32M45-3|ANO4 MULTI-MSMS UPN48_class_I_Rep_1 5 422.5926513671875 3 422.592058 1264.75434 -0.0072211 -3.0516E-06 1.1578 0.00048927 1.1506 0.00048622 422.59254979440703 64.881 0.15916 68.335 68.296 68.455 3.4541 22 14 2 0 0 0 0.67113 1 14721 14721 1.3296 0.11481 1 183740 + 46203 19661 29140 29153 53187 53187 0.13255699396358978 TVVVGWIFY 9 Unmodified _TVVVGWIFY_ 0 0 0 L1MB7_dup12293|chrX:74226882-74227189:+|3.479286838978992|0.0433546329596834|6.33|151.0|20|2|anti-sense L1MB7_dup12293|chrX:74226882-74227189:+|3.479286838978992|0.0433546329596834|6.33|151.0|20|2|anti-sense L1MB7_dup12293|chrX:74226882-74227189:+|3.479286838978992|0.0433546329596834|6.33|151.0|20|2|anti-sense MSMS UPN47_class_I_Rep_3 4 542.297119140625 2 542.29731 1082.58007 NaN NaN NaN NaN NaN NaN NaN 54.865 1 58.051 57.551 58.551 3.1856 0 0 0 0.26661 1 12492 12492 12.532 2.4576 1 46204 10694 29141 29154 53188 53188 0.042081189710415856 TVVVMILTCL 10 Unmodified _TVVVMILTCL_ 0 0 0 REV__L1MD2_dup6915|chrX:154693287-154693700:+|1.5645272123503609|0.0230871582807687|6.08|151.0|6|1|sense REV__L1MD2_dup6915|chrX:154693287-154693700:+|1.5645272123503609|0.0230871582807687|6.08|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 546.31298828125 2 546.313789 1090.61302 NaN NaN NaN NaN NaN NaN NaN 50.629 1 53.968 53.468 54.468 3.3386 0 0 0 0.53105 1 11145 11145 6.7232 0 1 + 46205 27426 29142 29155 53189 53189 0.0713424170721737 TVWHDVVTF 9 Unmodified _TVWHDVVTF_ 0 0 0 PABL_B-int_dup16|chr2:73752093-73753750:+|3.638343579086|0.4144921404954272|3.13|151.0|36|3|sense PABL_B-int_dup16|chr2:73752093-73753750:+|3.638343579086|0.4144921404954272|3.13|151.0|36|3|sense PABL_B-int_dup16|chr2:73752093-73753750:+|3.638343579086|0.4144921404954272|3.13|151.0|36|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.2796630859375 2 552.279649 1102.54475 0.53195 0.00029379 -0.56562 -0.00031238 -0.033667 -1.8594E-05 552.7806750074598 54.03 1.0544 57.544 57.094 58.148 3.5143 225 75 4 0 0 0 0.35081 1 11556 11556 10.824 0 1 903860 46206 16885 29143 29156 53190 53190 -0.0024254355678294814 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 491.7962951660156 2 491.795269 981.575986 0.23214 0.00011416 1.3421 0.00066002 1.5742 0.00077419 491.7957166946967 63.4 0.23822 63.4 63.316 63.554 0 34 28 2 0 0 0 0.82752 1 14264 14264 7.9102 0 1 79894 46207 7405 29144 29157 53191 53191 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MSMS UPN46_class_I_Rep_3 1 491.7962951660156 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 62.778 1 62.778 62.278 63.278 0 0 0 0 0.39996 1 14057 14057 7.9102 2.1497 1 46208 7405 29144 29157 53192 53192 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MSMS UPN47_class_I_Rep_1 2 491.795166015625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 46.82 1 50.515 50.015 51.015 3.6951 0 0 0 0.39996 1 9967 9967 7.9102 0 1 46209 7405 29144 29157 53193 53193 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.7955322265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 45.859 1 49.212 48.712 49.712 3.3534 0 0 0 0.40643 1 9704 9704 2.0598 0 1 46210 7405 29144 29157 53194 53194 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.7961730957031 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 51.181 1 54.519 54.019 55.019 3.3386 0 0 0 0.40643 1 11315 11315 2.0598 0 1 46211 7405 29144 29157 53195 53195 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MSMS UPN48_class_I_Rep_2 6 491.7959289550781 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 67.002 1 70.498 69.998 70.998 3.4964 0 0 0 0.40643 1 15351 15351 2.0598 0.21551 1 46212 7405 29144 29157 53196 53196 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 492.2970886230469 2 491.795269 981.575986 0.25858 0.00012717 1.2257 0.00060277 1.4842 0.00072994 491.795738334399 62.842 0.25869 66.351 66.299 66.558 3.5091 29 18 2 0 0 0 0.82752 1 14009 14009 2.0598 0 1 69552 46213 7405 29144 29157 53197 53197 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.79638671875 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 72.23 1 75.757 75.257 76.257 3.5266 0 0 0 0.40643 1 16824 16824 2.0598 0 1 46214 7405 29144 29157 53198 53198 0.08446074267988024 TVWKPRPV 8 Unmodified _TVWKPRPV_ 0 0 0 ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF ENST00000552109.5_1_12:42554393-42631425:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 491.795269 981.575986 0.22282 0.00010958 1.2872 0.00063304 1.51 0.00074262 491.7958511769516 59.914 0.69256 63.431 63.089 63.782 3.5169 0.01588 -5.9407E-06 NaN 7.9102 100 58 2 NaN NaN NaN NaN 0 NaN NaN 0 155980 46215 7405 29144 29157 0.08446074267988024 TVWLHILHVP 10 Unmodified _TVWLHILHVP_ 0 0 0 nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B MSMS UPN47_class_I_Rep_1 2 405.2401428222656 3 405.572998 1213.69716 NaN NaN NaN NaN NaN NaN NaN 91.617 1 95.322 94.822 95.822 3.7053 0 0 0 0.53105 1 22857 22857 1.9064 0.1641 1 46216 16706 29145 29158 53199 53199 0.09886276910651759 TVWLHILHVP 10 Unmodified _TVWLHILHVP_ 0 0 0 nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B MSMS UPN48_class_I_Rep_1 5 405.5744934082031 3 405.572998 1213.69716 NaN NaN NaN NaN NaN NaN NaN 98.738 1 102.34 101.84 102.84 3.6065 0 0 0 0.53105 1 23831 23831 1.7423 0.78 1 46217 16706 29145 29158 53200 53200 0.09886276910651759 TVWRVRKKTER 11 Unmodified _TVWRVRKKTER_ 0 0 0 THE1C-int_dup810|chr6:147303523-147304925:+|1.4145614025876845|0.2095018764781607|2.76|151.0|31|3|sense THE1C-int_dup810|chr6:147303523-147304925:+|1.4145614025876845|0.2095018764781607|2.76|151.0|31|3|sense THE1C-int_dup810|chr6:147303523-147304925:+|1.4145614025876845|0.2095018764781607|2.76|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 486.95904541015625 3 486.959915 1457.85791 NaN NaN NaN NaN NaN NaN NaN 106.05 1 109.73 109.23 110.23 3.6834 0 0 0 0.38417 1 25081 25081 1.2148 0 1 46218 32947 29146 29159 53201 53201 0.14729999556698203 TVWRWPRPL 9 Unmodified _TVWRWPRPL_ 0 0 0 REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF MSMS UPN46_class_I_Rep_3 1 404.23284912109375 3 404.232975 1209.6771 NaN NaN NaN NaN NaN NaN NaN 78.94 1 78.94 78.44 79.44 0 0 0 0 0.38639 1 18517 18517 2.2828 0.5405 1 + 46219 22671 29147 29160 53202 53202 0.08064525970689829 TVWRWPRPL 9 Unmodified _TVWRWPRPL_ 0 0 0 REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF MSMS UPN47_class_I_Rep_1 2 404.23284912109375 3 404.232975 1209.6771 NaN NaN NaN NaN NaN NaN NaN 75.715 1 79.118 78.618 79.618 3.4034 0 0 0 0.38639 1 18704 18704 2.2828 0.5405 1 + 46220 22671 29147 29160 53203 53203 0.08064525970689829 TVWRWPRPL 9 Unmodified _TVWRWPRPL_ 0 0 0 REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF MSMS UPN47_class_I_Rep_3 4 404.23284912109375 3 404.232975 1209.6771 NaN NaN NaN NaN NaN NaN NaN 75.77 1 79.027 78.527 79.527 3.2573 0 0 0 0.39598 1 18815 18815 0.86438 0.16671 1 + 46221 22671 29147 29160 53204 53204 0.08064525970689829 TVWRWPRPL 9 Unmodified _TVWRWPRPL_ 0 0 0 REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF REV__ENST00000497885.1_1_17:4607542-4608541:+|nuORF MSMS UPN48_class_I_Rep_1 5 404.2326965332031 3 404.232975 1209.6771 NaN NaN NaN NaN NaN NaN NaN 75.66 1 79.159 78.659 79.659 3.4996 0 0 0 0.38639 1 17938 17938 2.2828 0.19677 1 + 46222 22671 29147 29160 53205 53205 0.08064525970689829 TVYGGLMYI 9 Oxidation (M) _TVYGGLM(Oxidation (M))YI_ TVYGGLM(1)YI TVYGGLM(51)YI 0 0 1 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_1 2 516.7575073242188 2 516.757161 1031.49977 0.22931 0.0001185 0.035531 1.8361E-05 0.26484 0.00013686 516.7572182158366 67.384 0.61013 70.745 70.475 71.086 3.3611 77 49 2 0 0 0 0.045397 1 16194 16194 50.855 10.898 1 112040 46223 5445 29148 29161 53206 53206 163 -0.014721104143291086 TVYGGLMYI 9 Oxidation (M) _TVYGGLM(Oxidation (M))YI_ TVYGGLM(1)YI TVYGGLM(51)YI 0 0 1 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_2 3 516.7574462890625 2 516.757161 1031.49977 0.022208 1.1476E-05 0.21346 0.00011031 0.23567 0.00012178 516.7572963850552 67.558 0.63764 70.821 70.637 71.275 3.2636 85 53 2 0 0 0 0.045397 2 16310 16310;16348 50.855 10.898 1 159670 46224 5445 29148 29161 53207;53208 53207 163 -0.014721104143291086 TVYGGLMYI 9 Oxidation (M) _TVYGGLM(Oxidation (M))YI_ TVYGGLM(1)YI TVYGGLM(82)YI 0 0 1 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_3 4 516.7567749023438 2 516.757161 1031.49977 0.28408 0.0001468 -0.135 -6.9765E-05 0.14908 7.7037E-05 516.7570700851544 67.665 0.77003 70.857 70.546 71.316 3.1914 101 59 2 0 0 0 0.0058965 3 16438 16363;16400;16438 81.864 33.518 1 144960 46225 5445 29148 29161 53209;53210;53211 53211 163 -0.014721104143291086 TVYGGVMYI 9 Oxidation (M) _TVYGGVM(Oxidation (M))YI_ TVYGGVM(1)YI TVYGGVM(44)YI 0 0 1 nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13 nc|ENSG00000003096|Q9P2N7-2|KLHL13 nc|ENSG00000003096|Q9P2N7-2|KLHL13 MULTI-MSMS UPN47_class_I_Rep_2 3 509.7495422363281 2 509.749336 1017.48412 0.19603 9.9927E-05 -0.010552 -5.3788E-06 0.18548 9.4548E-05 509.74929423779 59.82 0.5793 63.093 62.78 63.359 3.2731 59 35 2 0 0 0 0.060667 1 13922 13922 44.407 6.433 1 107190 46226 676 29149 29162 53212 53212 0 -0.023923969313500493 TVYGNPQYL 9 Unmodified _TVYGNPQYL_ 0 0 0 nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF nc|ENSG00000117308|Q14376-2|GALE nc|ENSG00000117308|Q14376-2|GALE MULTI-MSMS UPN47_class_I_Rep_2 3 527.7628784179688 2 527.763832 1053.51311 0.15756 8.3156E-05 -0.48971 -0.00025845 -0.33215 -0.0001753 527.763585091381 73.618 0.37184 76.923 76.709 77.08 3.3048 49 31 2 0 0 0 0.43153 1 18139 18139 6.2058 0 1 73716 46227 2216 29150 29163 53213 53213 -0.011505363107289668 TVYHSLFHH 9 Unmodified _TVYHSLFHH_ 0 0 0 L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|66|2|anti-sense L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|66|2|anti-sense L1MD1_dup201|chr1:147245834-147246995:-|1.0296718000989284|0.0205641714288504|5.65|150.0|66|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 571.2451171875 2 570.78289 1139.55123 0.29923 0.0001708 -1.3731 -0.00078374 -1.0739 -0.00061294 570.7820013981599 53.505 0.72433 57.032 56.739 57.464 3.5278 72 47 2 0 0 0 0.12444 1 11929 11929 2.0598 1.3694 1 100070 46228 11926 29151 29164 53214 53214 -0.012966056053755892 TVYIYYLPV 9 Unmodified _TVYIYYLPV_ 0 0 0 REV__L1MB1_dup4657|chr13:21087569-21088712:+|2.173241783097431|0.0018076762982527|10.23|137.0|47|1|anti-sense REV__L1MB1_dup4657|chr13:21087569-21088712:+|2.173241783097431|0.0018076762982527|10.23|137.0|47|1|anti-sense MSMS UPN48_class_I_Rep_3 7 565.8121337890625 2 565.810251 1129.60595 NaN NaN NaN NaN NaN NaN NaN 35.184 1 38.856 38.356 39.356 3.6721 0 0 0 0.39428 1 5675 5675 2.0598 0 1 + 46229 25673 29152 29165 53215 53215 0.04632968422652084 TVYQWRLL 8 Unmodified _TVYQWRLL_ 0 0 0 L1MC5a_dup9679|chrX:46874455-46876000:-|1.223475448767396|0.0887614601205886|3.78|151.0|49|3|sense L1MC5a_dup9679|chrX:46874455-46876000:-|1.223475448767396|0.0887614601205886|3.78|151.0|49|3|sense L1MC5a_dup9679|chrX:46874455-46876000:-|1.223475448767396|0.0887614601205886|3.78|151.0|49|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 539.7728881835938 2 539.805834 1077.59712 0.46327 0.00025007 2.36 0.001274 2.8233 0.001524 539.8063478999411 65.953 0.12143 69.405 69.291 69.413 3.4516 9 7 2 0 0 0 0.72333 1 15036 15036 8.5933 0 1 48134 46230 11775 29153 29166 53216 53216 0.06142039576843672 TVYRFANR 8 Unmodified _TVYRFANR_ 0 0 0 ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN MULTI-MSMS UPN48_class_I_Rep_3 7 513.7786865234375 2 513.777608 1025.54066 0.36156 0.00018576 0.98975 0.00050851 1.3513 0.00069428 513.778038470393 77.868 0.25383 81.47 81.248 81.502 3.6016 42 23 2 0 0 0 0.82752 1 18371 18371 12.532 0 1 189930 46231 2651 29154 29167 53217 53217 0.02891411740165495 TWAEQFTQ 8 Unmodified _TWAEQFTQ_ 0 0 0 REV__MER21B_dup486|chr3:23231478-23232313:-|1.4218007600760396|0.0123969787683742|6.84|151.0|6|1|sense REV__MER21B_dup486|chr3:23231478-23232313:-|1.4218007600760396|0.0123969787683742|6.84|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 505.7329406738281 2 505.732532 1009.45051 0.29399 0.00014868 0.81845 0.00041392 1.1124 0.0005626 505.7328584350886 78.715 0.065765 78.715 78.676 78.742 0 11 7 2 0 0 0 0.82752 1 18456 18456 0.69038 0 1 62119 + 46232 31213 29155 29168 53218 53218 -0.05383682378896992 TWAPVGLYKL 10 Unmodified _TWAPVGLYKL_ 0 0 0 REV__AluJr_dup56999|chr12:104531212-104531480:+|1.6378885642205516|0.0058586746013122|8.13|151.0|19|3|anti-sense REV__AluJr_dup56999|chr12:104531212-104531480:+|1.6378885642205516|0.0058586746013122|8.13|151.0|19|3|anti-sense MSMS UPN46_class_I_Rep_3 1 574.3688354492188 2 574.329142 1146.64373 NaN NaN NaN NaN NaN NaN NaN 58.383 1 58.383 57.883 58.883 0 0 0 0 0.53105 1 12847 12847 1.4819 0.8804 1 + 46233 17044 29156 29169 53219 53219 0.0762747940814279 TWCLMWIW 8 Unmodified _TWCLMWIW_ 0 0 0 ENST00000345724.7_1_18:56376765-56377292:+|nuORF ENST00000345724.7_1_18:56376765-56377292:+|nuORF ENST00000345724.7_1_18:56376765-56377292:+|nuORF MSMS UPN47_class_I_Rep_1 2 569.7637939453125 2 569.764266 1137.51398 NaN NaN NaN NaN NaN NaN NaN 27.64 1 31.406 30.906 31.906 3.7662 0 0 0 0.40738 1 4143 4143 0.79363 0 1 46234 6260 29157 29170 53220 53220 -0.049277364670388124 TWEWNWWV 8 Unmodified _TWEWNWWV_ 0 0 0 L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|35|2|anti-sense L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|35|2|anti-sense L1MB8_dup15484|chr19:47646778-47647427:-|1.1501462297970395|0.0145806600245986|6.3|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 603.7718505859375 2 603.771991 1205.52943 NaN NaN NaN NaN NaN NaN NaN 42.906 1 46.146 45.646 46.646 3.2394 0 0 0 0.40746 1 8851 8851 0.69038 0 1 46235 10956 29158 29171 53221 53221 -0.06511410353982683 TWFMFSFF 8 Unmodified _TWFMFSFF_ 0 0 0 L1MA7_dup3598|chr7:92880257-92882976:+|6.278108901310202|0.0031537569337759|10.96|149.0|81|1|anti-sense L1MA7_dup3598|chr7:92880257-92882976:+|6.278108901310202|0.0031537569337759|10.96|149.0|81|1|anti-sense L1MA7_dup3598|chr7:92880257-92882976:+|6.278108901310202|0.0031537569337759|10.96|149.0|81|1|anti-sense MSMS UPN48_class_I_Rep_1 5 556.75146484375 2 556.749139 1111.48372 NaN NaN NaN NaN NaN NaN NaN 26.003 1 29.569 29.069 30.069 3.5667 0 0 0 0.40404 1 3119 3119 5.2307 0.47466 1 46236 10019 29159 29172 53222 53222 -0.0675577186054852 TWFWLKKR 8 Unmodified _TWFWLKKR_ 0 0 0 REV__MLT1I-int_dup99|chr2:173929289-173930293:-|2.4755817868102565|0.1676273344948947|3.88|151.0|32|3|sense REV__MLT1I-int_dup99|chr2:173929289-173930293:-|2.4755817868102565|0.1676273344948947|3.88|151.0|32|3|sense MSMS UPN46_class_I_Rep_3 1 582.8397216796875 2 582.837468 1163.66038 NaN NaN NaN NaN NaN NaN NaN 78.119 1 78.119 77.619 78.619 0 0 0 0 0.40746 1 18285 18285 0.69038 0 1 + 46237 31771 29160 29173 53223 53223 0.08510025084729023 TWKHSPAYTF 10 Unmodified _TWKHSPAYTF_ 0 0 0 MLT1C_dup9047|chr8:55983852-55984258:-|1.8291341135631296|0.0260153167298787|6.14|151.0|3|1|sense MLT1C_dup9047|chr8:55983852-55984258:-|1.8291341135631296|0.0260153167298787|6.14|151.0|3|1|sense MLT1C_dup9047|chr8:55983852-55984258:-|1.8291341135631296|0.0260153167298787|6.14|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.3046875 2 619.303655 1236.59276 0.55556 0.00034406 -0.38726 -0.00023983 0.1683 0.00010423 619.3031604837515 59.618 0.25217 63.135 63.017 63.269 3.5169 35 20 2 0 0 0 0.56155 1 13023 13023 2.7352 0.89096 1 106560 46238 16320 29161 29174 53224 53224 -0.016074696367240904 TWKKYLKR 8 Unmodified _TWKKYLKR_ 0 0 0 ENST00000260731.4_1_10:94405253-94405319:+|nuORF ENST00000260731.4_1_10:94405253-94405319:+|nuORF ENST00000260731.4_1_10:94405253-94405319:+|nuORF MSMS UPN47_class_I_Rep_2 3 561.8453369140625 2 561.842751 1121.67095 NaN NaN NaN NaN NaN NaN NaN 88.2 1 91.647 91.147 92.147 3.4471 0 0 0 0.40753 1 21935 21935 0.6015 0 1 46239 5952 29162 29175 53225 53225 0.11498007739169225 TWKQYLLTL 9 Unmodified _TWKQYLLTL_ 0 0 0 REV__L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|9|1|sense REV__L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 583.3341064453125 2 583.334424 1164.6543 NaN NaN NaN NaN NaN NaN NaN 88.617 1 92.355 91.855 92.855 3.7379 0 0 0 0.39428 1 21094 21094 2.0598 0.40713 1 + 46240 26504 29163 29176 53226 53226 0.0785546206257095 TWKVLVHL 8 Unmodified _TWKVLVHL_ 0 0 0 REV__ENST00000480463.6_1_6:52943619-52957704:+|nuORF REV__ENST00000480463.6_1_6:52943619-52957704:+|nuORF MSMS UPN48_class_I_Rep_1 5 498.30609130859375 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 44.391 1 47.904 47.404 48.404 3.5132 0 0 0 0.40625 1 8444 8444 2.3027 0.4585 1 + 46241 22561 29164 29177 53227 53227 0.0988724492780193 TWLAWRRRRR 10 Unmodified _TWLAWRRRRR_ 0 0 0 ENST00000315691.7_1_3:143690776-143690935:+|nuORF ENST00000315691.7_1_3:143690776-143690935:+|nuORF ENST00000315691.7_1_3:143690776-143690935:+|nuORF MSMS UPN47_class_I_Rep_1 2 486.30328369140625 3 486.288477 1455.8436 NaN NaN NaN NaN NaN NaN NaN 42.054 1 45.733 45.233 46.233 3.6792 0 0 0 0.53105 1 8509 8509 0.69767 0 1 46242 6132 29165 29178 53228 53228 0.1339139191909453 TWLILFILFF 10 Unmodified _TWLILFILFF_ 0 0 0 AluJr_dup18612|chr4:55404427-55404729:-|1.7120556395255435|0.1290358874227526|3.73|151.0|12|1|anti-sense AluJr_dup18612|chr4:55404427-55404729:-|1.7120556395255435|0.1290358874227526|3.73|151.0|12|1|anti-sense AluJr_dup18612|chr4:55404427-55404729:-|1.7120556395255435|0.1290358874227526|3.73|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 438.26202392578125 3 438.261649 1311.76312 NaN NaN NaN NaN NaN NaN NaN 42.283 1 46.041 45.541 46.541 3.7579 0 0 0 0.53105 1 7809 7809 0.77653 0.078866 1 46243 135 29166 29179 53229 53229 0.11970673032828927 TWLIVVFL 8 Unmodified _TWLIVVFL_ 0 0 0 AluSx_dup47375|chr7:143295029-143295326:-|1.294600355301106|0.1004354086986449|3.69|151.0|13|1|anti-sense AluSx_dup47375|chr7:143295029-143295326:-|1.294600355301106|0.1004354086986449|3.69|151.0|13|1|anti-sense AluSx_dup47375|chr7:143295029-143295326:-|1.294600355301106|0.1004354086986449|3.69|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.80633544921875 2 495.804771 989.59499 NaN NaN NaN NaN NaN NaN NaN 81.799 1 85.484 84.984 85.984 3.685 0 0 0 0.40738 1 19376 19376 0.79363 0 1 46244 289 29167 29180 53230 53230 0.09977610839052886 TWLLMKNPQ 9 Unmodified _TWLLMKNPQ_ 0 0 0 REV__MER102b_dup268|chr2:39118566-39118853:-|2.169096189967943|0.0118518677190752|7.52|151.0|23|3|anti-sense REV__MER102b_dup268|chr2:39118566-39118853:-|2.169096189967943|0.0118518677190752|7.52|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 565.8048095703125 2 565.804977 1129.5954 NaN NaN NaN NaN NaN NaN NaN 54.283 1 57.797 57.297 58.297 3.5143 0 0 0 0.38639 1 11478 11478 3.9444 0 1 + 46245 31067 29168 29181 53231 53231 0.035786624965794545 TWLMHQRQ 8 Unmodified _TWLMHQRQ_ 0 0 0 REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E MSMS UPN48_class_I_Rep_2 6 550.27734375 2 550.276918 1098.53928 NaN NaN NaN NaN NaN NaN NaN 88.714 1 92.452 91.952 92.952 3.7379 0 0 0 0.40604 1 21118 21118 2.5775 0.27475 1 + 46246 17714 29169 29182 53232 53232 -0.006045456202400601 TWLPLRPLLM 10 Unmodified _TWLPLRPLLM_ 0 0 0 REV__HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|49|3|sense REV__HERVL-int_dup6|chr1:12389383-12391577:-|2.0962066293365225|0.0809324189091084|4.69|151.0|49|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 620.368896484375 2 620.367744 1238.72094 0.51157 0.00031736 0.82882 0.00051417 1.3404 0.00083154 620.3679047047864 107.9 0.13115 111.44 111.37 111.51 3.5382 25 13 2 0 0 0 0.54466 1 26374 26374 6.2058 1.3088 1 3333200 + 46247 23888 29170 29183 53233 53233 0.11112374352819643 TWLQLQLW 8 Unmodified _TWLQLQLW_ 0 0 0 MER57E3_dup12|chr1:247209904-247210377:+|2.641996184179247|0.3400952807537814|2.96|151.0|22|1|anti-sense MER57E3_dup12|chr1:247209904-247210377:+|2.641996184179247|0.3400952807537814|2.96|151.0|22|1|anti-sense MER57E3_dup12|chr1:247209904-247210377:+|2.641996184179247|0.3400952807537814|2.96|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_1 2 544.3211059570312 2 544.300384 1086.58622 NaN NaN NaN NaN NaN NaN NaN 30.082 1 33.827 33.327 34.327 3.7449 0 0 0 0.40746 1 4870 4870 0.69038 0 1 46248 16132 29171 29184 53234 53234 0.04638637202560858 TWLQLQLW 8 Unmodified _TWLQLQLW_ 0 0 0 MER57E3_dup12|chr1:247209904-247210377:+|2.641996184179247|0.3400952807537814|2.96|151.0|22|1|anti-sense MER57E3_dup12|chr1:247209904-247210377:+|2.641996184179247|0.3400952807537814|2.96|151.0|22|1|anti-sense MER57E3_dup12|chr1:247209904-247210377:+|2.641996184179247|0.3400952807537814|2.96|151.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.30029296875 2 544.300384 1086.58622 0.013717 7.4662E-06 -0.020482 -1.1148E-05 -0.0067648 -3.6821E-06 544.3001505703247 29.317 0.09174 32.809 32.747 32.838 3.4923 9 6 2 0 0 0 0.82752 1 4685 4685 0.69038 0 1 26834 46249 16132 29171 29184 53235 53235 0.04638637202560858 TWLRPPPPSP 10 Unmodified _TWLRPPPPSP_ 0 0 0 REV__ENST00000530353.1_1_8:145980398-145981007:-|nuORF REV__ENST00000530353.1_1_8:145980398-145981007:-|nuORF MSMS UPN46_class_I_Rep_3 1 574.3154907226562 2 574.316566 1146.61858 NaN NaN NaN NaN NaN NaN NaN 85.949 1 85.949 85.449 86.449 0 0 0 0 0.53105 1 20533 20533 1.3295 0.5359 1 + 46250 22838 29172 29185 53236 53236 0.05113424605565342 TWMCYFPI 8 Unmodified _TWMCYFPI_ 0 0 0 REV__L1MA8_dup1918|chr3:142472940-142473540:-|2.0379620043249984|0.1084724842031417|4.23|151.0|24|2|anti-sense REV__L1MA8_dup1918|chr3:142472940-142473540:-|2.0379620043249984|0.1084724842031417|4.23|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7345581054688 2 530.735174 1059.4558 NaN NaN NaN NaN NaN NaN NaN 22.398 1 25.748 25.248 26.248 3.3498 0 0 0 0.40738 1 2674 2674 0.79363 0 1 + 46251 25540 29173 29186 53237 53237 -0.07155418112279222 TWMEKRPF 8 Unmodified _TWMEKRPF_ 0 0 0 ENST00000589222.5_2_17:59469571-59469784:+|nuORF ENST00000589222.5_2_17:59469571-59469784:+|nuORF ENST00000589222.5_2_17:59469571-59469784:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.7745971679688 2 547.776219 1093.53789 NaN NaN NaN NaN NaN NaN NaN 25.325 1 29.075 28.575 29.575 3.7495 0 0 0 0.40604 1 3457 3457 2.5775 0 1 46252 7601 29174 29187 53238 53238 -0.0051417970898910426 TWMLIREDLW 10 Unmodified _TWMLIREDLW_ 0 0 0 REV__L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|22|3|anti-sense REV__L1MC1_dup11639|chr16:89399295-89399811:+|2.382445761722439|0.0461083324038625|5.69|151.0|22|3|anti-sense MSMS UPN47_class_I_Rep_2 3 454.8995666503906 3 454.900674 1361.68019 NaN NaN NaN NaN NaN NaN NaN 19.19 1 22.587 22.087 23.087 3.3963 0 0 0 0.53105 1 1763 1763 0.77653 0.21336 1 + 46253 26512 29175 29188 53239 53239 0.013819882425423202 TWMLLILP 8 Unmodified _TWMLLILP_ 0 0 0 REV__MLT1B_dup14980|chr15:72781751-72782116:+|1.3784593125678548|0.0581651344493389|4.57|151.0|16|1|anti-sense REV__MLT1B_dup14980|chr15:72781751-72782116:+|1.3784593125678548|0.0581651344493389|4.57|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 493.7901916503906 2 493.790807 985.56706 NaN NaN NaN NaN NaN NaN NaN 83.279 1 83.279 82.779 83.779 0 0 0 0 0.40738 1 19773 19773 0.79363 0 1 + 46254 31619 29176 29189 53240 53240 0.07369964587314826 TWNHKRLRTA 10 Unmodified _TWNHKRLRTA_ 0 0 0 L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|26|1|sense L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|26|1|sense L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|26|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 641.8593139648438 2 641.859995 1281.70544 0.63475 0.00040742 -0.11263 -7.229E-05 0.52213 0.00033513 641.8597157493922 103.76 0.97128 107.28 106.89 107.87 3.5289 342 152 4 0 0 0 0.84575 1 25326 25326 3.5965 0.60125 1 350760000 46255 9272 29177 29190 53241 53241 0.0758522387998255 TWNQWYRF 8 Unmodified _TWNQWYRF_ 0 0 0 L1ME1_dup12081|chr6:108618411-108619105:-|1.0509220512475597|0.0268497068226547|5.29|151.0|44|3|anti-sense L1ME1_dup12081|chr6:108618411-108619105:-|1.0509220512475597|0.0268497068226547|5.29|151.0|44|3|anti-sense L1ME1_dup12081|chr6:108618411-108619105:-|1.0509220512475597|0.0268497068226547|5.29|151.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 600.7835693359375 2 600.78289 1199.55123 0.55353 0.00033255 0.74895 0.00044996 1.3025 0.00078251 600.7833089919925 13.494 0.33769 17.008 16.861 17.199 3.5133 71 46 2 0 0 0 0.82752 1 263 263 0.69038 0.16561 1 46606 46256 12193 29178 29191 53242 53242 -0.04056605605410368 TWSWRNRIP 9 Unmodified _TWSWRNRIP_ 0 0 0 L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|20|3|sense L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|20|3|sense L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 406.2188720703125 3 405.884235 1214.63087 -0.07422 -3.0125E-05 0.14988 6.0834E-05 0.07566 3.0709E-05 406.21872775280957 67.335 0.39589 70.787 70.561 70.957 3.4516 43 26 2 0 0 0 0.49573 1 15454 15454 1.0715 0.10919 1 57302 46257 10092 29179 29192 53243 53243 0.03214461068591845 TWSWRNRIP 9 Unmodified _TWSWRNRIP_ 0 0 0 L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|20|3|sense L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|20|3|sense L1MA9_dup11189|chr11:3368510-3369111:+|1.0308998041419235|0.0661792584348218|3.96|150.0|20|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 405.884235 1214.63087 0.15044 6.1061E-05 -0.56393 -0.00022889 -0.41349 -0.00016783 406.2184326074494 67.596 0.21351 71.104 71.013 71.227 3.5077 0.15835 -0.00055932 NaN 1.0715 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 58149 46258 10092 29179 29192 0.03214461068591845 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS UPN48_class_I_Rep_1 5 567.261474609375 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 71.526 1 74.992 74.492 75.492 3.466 0 0 0 0.31276 1 16728 16728 10.074 1.3285 1 46259 2193 29180 29193 53244 53244 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS UPN48_class_I_Rep_1 5 567.261474609375 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 71.822 1 75.288 74.788 75.788 3.466 0 0 0 0.31276 1 16819 16819 10.074 1.3285 1 46260 2193 29180 29193 53245 53245 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS UPN48_class_I_Rep_3 7 567.2618408203125 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 71.303 1 74.821 74.321 75.321 3.5185 0 0 0 0.36505 1 16548 16548 7.2892 1.0834 1 46261 2193 29180 29193 53246 53246 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS UPN48_class_I_Rep_3 7 567.260498046875 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 71.372 1 74.891 74.391 75.391 3.5185 0 0 0 0.072484 1 16570 16570 30.637 5.6456 1 46262 2193 29180 29193 53247 53247 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS UPN48_class_I_Rep_3 7 567.2621459960938 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 71.447 1 74.974 74.474 75.474 3.5266 0 0 0 0.10315 1 16592 16592 24.021 4.6586 1 46263 2193 29180 29193 53248 53248 -0.05326259893195129 TWTLFCWLM 9 Unmodified _TWTLFCWLM_ 0 0 0 ENST00000372756.5_1_20:43927148-43929544:-|nuORF ENST00000372756.5_1_20:43927148-43929544:-|nuORF ENST00000372756.5_1_20:43927148-43929544:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 601.2837524414062 2 600.782656 1199.55076 0.5959 0.00035801 1.0916 0.00065581 1.6875 0.0010138 600.7833600904191 13.205 0.25845 16.86 16.766 17.024 3.6549 61 35 2 0 0 0 0.48846 1 234 234 1.8442 0.36234 1 58938 46264 6404 29181 29194 53249 53249 -0.041034846411093895 TWTQGGNI 8 Unmodified _TWTQGGNI_ 0 0 0 L1PA6_dup391|chr1:197573397-197576092:+|1.423818353085879|0.0336577535353406|5.4|151.0|74|3|sense;L1PA8_dup3361|chr6:155990566-155991826:-|1.5508423774069844|0.0095395692384155|7.34|149.0|37|3|sense L1PA6_dup391|chr1:197573397-197576092:+|1.423818353085879|0.0336577535353406|5.4|151.0|74|3|sense L1PA6_dup391|chr1:197573397-197576092:+|1.423818353085879|0.0336577535353406|5.4|151.0|74|3|sense MSMS UPN47_class_I_Rep_2 3 438.7063293457031 2 438.714142 875.413731 NaN NaN NaN NaN NaN NaN NaN 18.522 1 21.912 21.412 22.412 3.3898 0 0 0 0.40581 1 1581 1581 2.8892 0 1 46265 14621 29182 29195 53250 53250 -0.028959342048096914 TWTRIFKT 8 Unmodified _TWTRIFKT_ 0 0 0 L1ME3A_dup15515|chr22:25683223-25684484:-|1.113764223669975|0.0815098896938384|3.77|151.0|43|3|sense L1ME3A_dup15515|chr22:25683223-25684484:-|1.113764223669975|0.0815098896938384|3.77|151.0|43|3|sense L1ME3A_dup15515|chr22:25683223-25684484:-|1.113764223669975|0.0815098896938384|3.77|151.0|43|3|sense MSMS UPN48_class_I_Rep_2 6 526.7970581054688 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 21.415 1 25.061 24.561 25.561 3.6459 0 0 0 0.40625 1 2018 2018 2.3027 0 1 46266 12657 29183 29196 53251 53251 0.05773753059793307 TWVACAEH 8 Unmodified _TWVACAEH_ 0 0 0 REV__ENSG00000108557|ENST00000353383|RAI1 REV__ENSG00000108557|ENST00000353383|RAI1 MULTI-SECPEP UPN48_class_I_Rep_3 7 459.17236328125 2 458.70272 915.390887 0.20479 9.3936E-05 -0.35976 -0.00016502 -0.15498 -7.1088E-05 458.70260886667705 85.611 0.57194 89.381 89.084 89.656 3.7701 111 66 2 0 0 0 0.72333 1 20330 20330 2.5775 0 1 180200 + 46267 18385 29184 29197 53252 53252 -0.07019276593939594 TWVCFMKL 8 Unmodified _TWVCFMKL_ 0 0 0 L1PA16_dup9649|chr10:87473204-87473933:+|2.39283964292188|0.1001031780022268|4.58|151.0|36|2|anti-sense L1PA16_dup9649|chr10:87473204-87473933:+|2.39283964292188|0.1001031780022268|4.58|151.0|36|2|anti-sense L1PA16_dup9649|chr10:87473204-87473933:+|2.39283964292188|0.1001031780022268|4.58|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_3 7 514.3086547851562 2 514.258816 1026.50308 NaN NaN NaN NaN NaN NaN NaN 45.107 1 48.744 48.244 49.244 3.6372 0 0 0 0.40625 1 8600 8600 2.3027 0.24298 1 46268 14140 29185 29198 53253 53253 -0.00911138841297543 TWVLCPGAWH 10 Unmodified _TWVLCPGAWH_ 0 0 0 REV__L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|250|1|anti-sense REV__L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|250|1|anti-sense MSMS UPN46_class_I_Rep_3 1 585.28369140625 2 585.281669 1168.54878 NaN NaN NaN NaN NaN NaN NaN 17.01 1 17.01 16.51 17.51 0 0 0 0 0.53105 1 1274 1274 1.6526 0.17072 1 + 46269 29014 29186 29199 53254 53254 -0.02874777334727696 TYARTSAGFS 10 Unmodified _TYARTSAGFS_ 0 0 0 REV__ENSG00000117751|ENST00000311772|PPP1R8 REV__ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS UPN47_class_I_Rep_1 2 530.75830078125 2 530.756538 1059.49852 0.028753 1.5261E-05 0.68409 0.00036309 0.71285 0.00037835 530.75699111343 43.883 1.1638 47.578 46.856 48.02 3.6951 127 68 3 0 0 0 0.53004 1 8984 8984 8.1555 8.1555 1 151930 + 46270 18640 29187 29200 53255 53255 -0.028846084588622034 TYARTSAGFS 10 Unmodified _TYARTSAGFS_ 0 0 0 REV__ENSG00000117751|ENST00000311772|PPP1R8 REV__ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS UPN47_class_I_Rep_3 4 530.7564086914062 2 530.756538 1059.49852 0.12348 6.5536E-05 0.57283 0.00030403 0.69631 0.00036957 530.7569156434143 44.308 0.98825 47.552 46.981 47.969 3.2441 90 55 2 0 0 0 0.4965 1 9249 9249 12.241 0 1 187820 + 46271 18640 29187 29200 53256 53256 -0.028846084588622034 TYAVRNILL 9 Unmodified _TYAVRNILL_ 0 0 0 L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|34|3|sense L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|34|3|sense L1ME1_dup19285|chr10:27517682-27519063:-|2.200554307799197|0.0939216305238458|4.55|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 531.8174438476562 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 92.306 1 95.709 95.209 96.209 3.4034 0 0 0 0.39428 1 23051 23051 2.0598 0.21551 1 46272 12280 29188 29201 53257 53257 0.09498308748334239 TYCLPEALPI 10 Unmodified _TYCLPEALPI_ 0 0 0 Tigger2a_dup2782|chr15:68098091-68098522:-|1.034921813178958|0.0204251005556245|5.66|150.0|22|2|anti-sense Tigger2a_dup2782|chr15:68098091-68098522:-|1.034921813178958|0.0204251005556245|5.66|150.0|22|2|anti-sense Tigger2a_dup2782|chr15:68098091-68098522:-|1.034921813178958|0.0204251005556245|5.66|150.0|22|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2897338867188 2 560.291368 1118.56818 NaN NaN NaN NaN NaN NaN NaN 38.661 1 42.041 41.541 42.541 3.3805 0 0 0 0.53105 1 7509 7509 1.4819 0.68827 1 46273 33335 29189 29202 53258 53258 0.013641341655556971 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2624816894531 2 497.262945 992.511337 -0.25257 -0.00012559 0.30179 0.00015007 0.049216 2.4473E-05 497.2629631970701 37.65 1.1169 41.315 40.937 42.054 3.6652 198 84 3 0 0 0 0.82752 1 7382 7382 4.3292 0 1 867850 46274 3602 29190 29203 53259 53259 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2625732421875 2 497.262945 992.511337 -0.16418 -8.1641E-05 0.13114 6.5209E-05 -0.033046 -1.6432E-05 497.2629565324561 43.312 0.5835 47 46.819 47.403 3.6875 42 31 2 0 0 0 0.82752 1 9003 9003 4.3292 0 1 66855 46275 3602 29190 29203 53260 53260 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2625732421875 2 497.262945 992.511337 -0.14562 -7.2414E-05 -0.0060068 -2.987E-06 -0.15163 -7.5401E-05 497.2628704359835 44.227 0.79259 47.922 47.41 48.203 3.6951 78 53 2 0 0 0 0.82752 1 9088 9088 4.3292 0 1 109570 46276 3602 29190 29203 53261 53261 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MSMS UPN47_class_I_Rep_1 2 497.26312255859375 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 38.488 1 42.153 41.653 42.653 3.6652 0 0 0 0.40472 1 7423 7423 4.3292 0 1 46277 3602 29190 29203 53262 53262 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MULTI-MSMS UPN47_class_I_Rep_2 3 497.26202392578125 2 497.262945 992.511337 -0.1546 -7.6878E-05 0.21459 0.00010671 0.059989 2.983E-05 497.262934568386 38.037 1.5586 41.424 40.919 42.478 3.3879 252 119 3 0 0 0 0.82752 2 7211 7211;7490 4.3292 0 1 864650 46278 3602 29190 29203 53263;53264 53263 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MSMS UPN47_class_I_Rep_2 3 497.26190185546875 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 38.948 1 42.327 41.827 42.827 3.3785 0 0 0 0.40472 1 7596 7596 4.3292 0 1 46279 3602 29190 29203 53265 53265 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MULTI-MSMS UPN47_class_I_Rep_3 4 497.2626953125 2 497.262945 992.511337 -0.28129 -0.00013987 0.16792 8.3499E-05 -0.11337 -5.6374E-05 497.2629429770066 38.117 1.608 41.358 40.956 42.564 3.2414 280 118 4 0 0 0 0.82752 1 7694 7694 4.3292 0 1 861130 46280 3602 29190 29203 53266 53266 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MULTI-MSMS UPN47_class_I_Rep_3 4 497.2634582519531 2 497.262945 992.511337 -0.021901 -1.0891E-05 0.10089 5.0171E-05 0.078993 3.928E-05 497.2628490196685 44.687 0.91393 47.931 47.349 48.263 3.2441 78 56 2 0 0 0 0.82752 2 9245 9245;9313 4.3292 0 1 65421 46281 3602 29190 29203 53267;53268 53267 0.014781313996763856 TYCPQIRI 8 Unmodified _TYCPQIRI_ 0 0 0 nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 nc|ENSG00000151743|Q8IY45-2|AMN1 MSMS UPN47_class_I_Rep_3 4 497.26300048828125 2 497.262945 992.511337 NaN NaN NaN NaN NaN NaN NaN 43.782 1 47.023 46.523 47.523 3.2419 0 0 0 0.40472 1 9118 9118 4.3292 0 1 46282 3602 29190 29203 53269 53269 0.014781313996763856 TYCSITVLF 9 Unmodified _TYCSITVLF_ 0 0 0 REV__nc|ENSG00000168000|Q96G97-3|BSCL2 REV__nc|ENSG00000168000|Q96G97-3|BSCL2 MSMS UPN48_class_I_Rep_1 5 523.7644653320312 2 523.764986 1045.51542 NaN NaN NaN NaN NaN NaN NaN 80.919 1 84.482 83.982 84.982 3.5624 0 0 0 0.081393 1 19286 19286 28.487 0 1 + 46283 20252 29191 29204 53270 53270 -0.005518238972854306 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MSMS UPN48_class_I_Rep_1 5 582.7759399414062 2 582.776605 1163.53866 NaN NaN NaN NaN NaN NaN NaN 81.99 1 85.565 85.065 86.065 3.5753 0 0 0 0.37476 1 19568 19568 6.7232 0 1 46284 1922 29192 29205 53271 53271 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MSMS UPN48_class_I_Rep_1 5 582.7769165039062 2 582.776605 1163.53866 NaN NaN NaN NaN NaN NaN NaN 82.125 1 85.701 85.201 86.201 3.5753 0 0 0 0.078496 1 19604 19604 29.082 14.676 1 46285 1922 29192 29205 53272 53272 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS UPN48_class_I_Rep_2 6 583.2783203125 2 582.776605 1163.53866 0.47712 0.00027806 -0.59528 -0.00034691 -0.11816 -6.8859E-05 582.776308819428 82.135 0.28268 85.804 85.675 85.958 3.669 55 36 2 0 0 0 0.027484 3 19521 19492;19521;19523 58.679 38.225 1 109000 46286 1922 29192 29205 53273;53274;53275 53274 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MSMS UPN48_class_I_Rep_3 7 582.7760009765625 2 582.776605 1163.53866 NaN NaN NaN NaN NaN NaN NaN 81.939 1 85.625 85.125 86.125 3.685 0 0 0 0.31276 1 19413 19413 10.074 0 1 46287 1922 29192 29205 53276 53276 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MSMS UPN48_class_I_Rep_3 7 582.7771606445312 2 582.776605 1163.53866 NaN NaN NaN NaN NaN NaN NaN 82.082 1 85.767 85.267 86.267 3.685 0 0 0 0.22485 1 19445 19445 14.838 7.7366 1 46288 1922 29192 29205 53277 53277 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MSMS UPN48_class_I_Rep_3 7 582.7753295898438 2 582.776605 1163.53866 NaN NaN NaN NaN NaN NaN NaN 82.087 1 85.772 85.272 86.272 3.685 0 0 0 0.078496 1 19447 19447 29.082 14.243 1 46289 1922 29192 29205 53278 53278 -0.03657106578953062 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS UPN48_class_I_Rep_1 5 511.23468017578125 2 511.234907 1020.45526 0.27203 0.00013907 -0.23672 -0.00012102 0.035314 1.8054E-05 511.23467515326934 36.814 0.70251 40.321 40 40.703 3.507 152 72 3 0 0 0 0.82752 5 6115 6115;6151;6192;6229;6262 56.177 33.029 1 228390 46290 3131 29193 29206 53279;53280;53281;53282;53283 53279 -0.05414798236131446 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS UPN48_class_I_Rep_2 6 511.23480224609375 2 511.234907 1020.45526 0.29203 0.0001493 -0.22914 -0.00011714 0.062894 3.2154E-05 511.23469046311243 36.544 0.70433 40.247 39.978 40.682 3.7021 149 80 2 0 0 0 0.82752 5 6096 6096;6134;6165;6201;6235 46.021 22.873 1 301000 46291 3131 29193 29206 53284;53285;53286;53287;53288 53284 -0.05414798236131446 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS UPN48_class_I_Rep_3 7 511.2347412109375 2 511.234907 1020.45526 0.20212 0.00010333 -0.099942 -5.1094E-05 0.10218 5.2238E-05 511.2348024207027 36.644 0.64198 40.307 39.985 40.627 3.663 162 71 3 0 0 0 0.82752 5 6010 6010;6044;6079;6112;6147 41.84 22.401 1 238150 46292 3131 29193 29206 53289;53290;53291;53292;53293 53289 -0.05414798236131446 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539.14,ASH1L,chr1,-,I8.1,155439069,155440489|51|11.81|1|intron ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS UPN48_class_I_Rep_1 5 597.248779296875 2 597.248546 1192.48254 0.44799 0.00026756 0.13342 7.9685E-05 0.58141 0.00034725 597.2484719863828 54.069 0.59605 57.583 57.329 57.925 3.5143 66 40 2 0 0 0 0.12795 3 11415 11375;11415;11457 28.495 14.588 1 167340 46293 2187 29194 29207 53294;53295;53296 53295 -0.10600314695761881 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539.14,ASH1L,chr1,-,I8.1,155439069,155440489|51|11.81|1|intron ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS UPN48_class_I_Rep_2 6 597.24853515625 2 597.248546 1192.48254 0.57194 0.00034159 -0.11914 -7.1154E-05 0.45281 0.00027044 597.248484549482 54.056 0.56588 57.638 57.33 57.896 3.5817 63 37 2 0 0 0 0.066364 3 11384 11343;11384;11437 41.956 22.699 1 190450 46294 2187 29194 29207 53297;53298;53299 53298 -0.10600314695761881 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539.14,ASH1L,chr1,-,I8.1,155439069,155440489|51|11.81|1|intron ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS UPN48_class_I_Rep_3 7 597.7512817382812 2 597.248546 1192.48254 0.37971 0.00022678 0.26945 0.00016093 0.64916 0.00038771 597.2486126615685 54.091 0.57965 57.661 57.32 57.899 3.5694 62 39 2 0 0 0 0.062142 4 11333 11287;11333;11338;11394 43.772 29.866 1 196880 46295 2187 29194 29207 53300;53301;53302;53303 53301 -0.10600314695761881 TYEAQFFGF 9 Unmodified _TYEAQFFGF_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS UPN48_class_I_Rep_1 5 555.2506103515625 2 555.250557 1108.48656 0.50546 0.00028066 0.19761 0.00010972 0.70307 0.00039038 555.2507080276486 81.946 0.54201 85.521 85.255 85.797 3.5753 111 64 2 0 0 0 0.025281 3 19552 19517;19552;19585 60.074 34.675 1 180710 46296 4332 29195 29208 53304;53305;53306 53305 -0.06334225202044763 TYEAQFFGF 9 Unmodified _TYEAQFFGF_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS UPN48_class_I_Rep_2 6 555.2508544921875 2 555.250557 1108.48656 0.49228 0.00027334 0.19805 0.00010997 0.69033 0.0003833 555.2507096198588 81.991 0.51206 85.66 85.378 85.89 3.669 115 66 2 0 0 0 0.037922 3 19421 19421;19450;19482 53.833 21.527 1 186850 46297 4332 29195 29208 53307;53308;53309 53307 -0.06334225202044763 TYEAQFFGF 9 Unmodified _TYEAQFFGF_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS UPN48_class_I_Rep_3 7 555.2513427734375 2 555.250557 1108.48656 0.42985 0.00023868 0.081172 4.5071E-05 0.51103 0.00028375 555.2506280009092 81.9 0.46484 85.585 85.317 85.782 3.685 102 54 2 0 0 0 0.081756 3 19370 19370;19403;19442 38.176 18.919 1 219040 46298 4332 29195 29208 53310;53311;53312 53310 -0.06334225202044763 TYEPPLLHNF 10 Unmodified _TYEPPLLHNF_ 0 0 0 REV__ENST00000529654.5_1_8:145615920-145616956:+|nuORF REV__ENST00000529654.5_1_8:145615920-145616956:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 615.8126220703125 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.54466 1 15624 15624 6.2058 0 1 904810 + 46299 20472 29196 29209 53313 53313 0.0024539716048366245 TYEQDKNVP 9 Unmodified _TYEQDKNVP_ 0 0 0 REV__L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|51|3|sense REV__L1ME1_dup22373|chr12:49608518-49610508:+|2.209628986853468|0.2151211034009663|3.36|151.0|51|3|sense MSMS UPN48_class_I_Rep_1 5 547.26220703125 2 547.261653 1092.50875 NaN NaN NaN NaN NaN NaN NaN 43.015 1 46.526 46.026 47.026 3.5103 0 0 0 0.38639 1 8026 8026 3.9444 1.0552 1 + 46300 27677 29197 29210 53314 53314 -0.03380045524272646 TYESIFSHF 9 Unmodified _TYESIFSHF_ 0 0 0 ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA ENST00000530761.5_1_11:117857521-117870353:+|nuORF ENST00000530761.5_1_11:117857521-117870353:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 566.2644653320312 2 565.761289 1129.50803 0.52226 0.00029548 -0.022583 -1.2777E-05 0.49968 0.0002827 565.7610607641102 65.358 0.58311 68.812 68.575 69.159 3.4541 62 41 2 0 0 0 0.0059033 3 14899 14835;14884;14899 81.89 47.788 1 161070 46301 1935 29198 29211 53315;53316;53317 53317 -0.05154840173327102 TYESIFSHF 9 Unmodified _TYESIFSHF_ 0 0 0 ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA ENST00000530761.5_1_11:117857521-117870353:+|nuORF ENST00000530761.5_1_11:117857521-117870353:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 565.76171875 2 565.761289 1129.50803 0.51928 0.00029379 0.17748 0.00010041 0.69676 0.0003942 565.7613054052604 65.169 0.56208 68.648 68.431 68.993 3.4792 58 40 2 0 0 0 0.032038 4 14787 14761;14787;14833;14849 56.177 30.778 1 194830 46302 1935 29198 29211 53318;53319;53320;53321 53319 -0.05154840173327102 TYESIFSHF 9 Unmodified _TYESIFSHF_ 0 0 0 ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA ENST00000530761.5_1_11:117857521-117870353:+|nuORF ENST00000530761.5_1_11:117857521-117870353:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 565.7608032226562 2 565.761289 1129.50803 0.47579 0.00026918 -0.073445 -4.1553E-05 0.40234 0.00022763 565.7611814627371 65.135 0.69884 68.643 68.361 69.06 3.5077 77 48 2 0 0 0 0.061943 4 14728 14673;14678;14728;14732 43.858 23.405 1 133720 46303 1935 29198 29211 53322;53323;53324;53325 53324 -0.05154840173327102 TYEVLDFLGR 10 Unmodified _TYEVLDFLGR_ 0 0 0 nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3 nc|ENSG00000110422|Q9H422-2|HIPK3 nc|ENSG00000110422|Q9H422-2|HIPK3 MULTI-SECPEP UPN48_class_I_Rep_3 7 404.8802185058594 3 404.880156 1211.61864 0.0084444 3.419E-06 -0.15334 -6.2086E-05 -0.1449 -5.8667E-05 404.88022830218523 39.88 0.11367 43.531 43.45 43.564 3.6509 15 11 2 0 0 0 0.84575 1 7002 7002 1.7423 0 1 52568 46304 1938 29199 29212 53326 53326 0.021293798148690257 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 ENST00000467758.1_1_1:62941350-62941566:-|nuORF ENST00000467758.1_1_1:62941350-62941566:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 589.2804565429688 2 589.279846 1176.54514 0.40661 0.00023961 0.26708 0.00015739 0.67369 0.00039699 589.2800401575282 49.318 0.56842 52.843 52.596 53.164 3.5246 64 39 3 0 0 0 0.14216 3 9937 9937;9984;10000 26.268 5.8536 1 166810 46305 2191 29200 29213 53327;53328;53329 53327 -0.03607168627581814 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 ENST00000467758.1_1_1:62941350-62941566:-|nuORF ENST00000467758.1_1_1:62941350-62941566:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 589.2815551757812 2 589.279846 1176.54514 0.41354 0.00024369 0.1054 6.211E-05 0.51894 0.0003058 589.2797661777876 49.127 0.53137 52.844 52.566 53.097 3.7175 56 35 2 0 0 0 0.19147 4 9840 9840;9860;9901;9930 21.537 5.3879 1 168850 46306 2191 29200 29213 53330;53331;53332;53333 53330 -0.03607168627581814 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 ENST00000467758.1_1_1:62941350-62941566:-|nuORF ENST00000467758.1_1_1:62941350-62941566:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 589.2801513671875 2 589.279846 1176.54514 0.41241 0.00024303 0.22033 0.00012984 0.63275 0.00037287 589.2799042144521 49.239 0.60449 52.868 52.612 53.216 3.6291 67 42 2 0 0 0 0.21414 4 9863 9819;9863;9906;9913 19.362 5.4559 1 166280 46307 2191 29200 29213 53334;53335;53336;53337 53335 -0.03607168627581814 TYFEKNFNL 9 Unmodified _TYFEKNFNL_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS UPN48_class_I_Rep_1 5 588.2904052734375 2 588.290214 1174.56587 0.49418 0.00029072 -0.15217 -8.952E-05 0.34201 0.0002012 588.2900952013904 56.463 1.0174 59.965 59.593 60.61 3.5014 233 83 4 0 0 0 0.006587 6 12212 12091;12137;12174;12212;12255;12294 107.1 65.144 1 2856900 46308 1811 29201 29214 53338;53339;53340;53341;53342;53343 53341 -0.0144257824788383 TYFEKNFNL 9 Unmodified _TYFEKNFNL_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS UPN48_class_I_Rep_2 6 588.2904052734375 2 588.290214 1174.56587 0.59521 0.00035016 -0.19286 -0.00011346 0.40235 0.0002367 588.2900509792524 56.471 1.1805 60.004 59.561 60.741 3.5333 264 103 4 0 0 0 0.006303 8 12177 12028;12066;12102;12141;12177;12212;12251;12288 117.76 75.805 1 1539000 46309 1811 29201 29214 53344;53345;53346;53347;53348;53349;53350;53351 53348 -0.0144257824788383 TYFEKNFNL 9 Unmodified _TYFEKNFNL_ 0 0 0 nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS UPN48_class_I_Rep_3 7 588.2904663085938 2 588.290214 1174.56587 0.40954 0.00024093 -0.057892 -3.4058E-05 0.35165 0.00020687 588.2901393111637 56.376 0.90612 59.919 59.499 60.406 3.5427 249 83 4 0 0 0 0.0055879 6 11962 11962;11998;12037;12076;12122;12160 110.79 72.617 1 1650700 46310 1811 29201 29214 53352;53353;53354;53355;53356;53357 53352 -0.0144257824788383 TYFKTMPDL 9 Unmodified _TYFKTMPDL_ 0 0 0 ENST00000517674.5_1_8:102644467-102676686:+|nuORF;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 ENST00000517674.5_1_8:102644467-102676686:+|nuORF ENST00000517674.5_1_8:102644467-102676686:+|nuORF MSMS UPN47_class_I_Rep_1 2 558.7351684570312 2 558.275718 1114.53688 NaN NaN NaN NaN NaN NaN NaN 31.945 1 35.675 35.175 36.175 3.7293 0 0 0 0.39598 1 5431 5431 1.6526 0.85899 1 46311 1238 29202 29215 53358 53358 -0.01580438868541023 TYFQQFIDI 9 Unmodified _TYFQQFIDI_ 0 0 0 REV__L1MC4_dup714|chr1:84539332-84539749:-|1.0189810021624992|0.0268412235958192|5.25|151.0|9|1|sense REV__L1MC4_dup714|chr1:84539332-84539749:-|1.0189810021624992|0.0268412235958192|5.25|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.2904052734375 2 587.792589 1173.57063 0.42109 0.00024752 -1.9978 -0.0011743 -1.5767 -0.00092676 588.2905231434644 56.965 0.25868 60.508 60.406 60.664 3.5427 43 27 2 0 0 0 0.32682 1 12199 12199 12.241 2.8575 1 309150 + 46312 26938 29203 29216 53359 53359 -0.009216941051363392 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS UPN48_class_I_Rep_2 6 616.8007202148438 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 59.803 1 63.29 62.79 63.79 3.4868 0 0 0 0.23173 1 13152 13152 14.405 4.2548 1 46313 2366 29204 29217 53360 53360 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS UPN48_class_I_Rep_2 6 616.8001708984375 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 59.954 1 63.441 62.941 63.941 3.4868 0 0 0 0.34878 1 13197 13197 8.1555 1.0538 1 46314 2366 29204 29217 53361 53361 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS UPN48_class_I_Rep_3 7 616.8021240234375 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 59.503 1 63.02 62.52 63.52 3.5169 0 0 0 0.37891 1 12992 12992 5.7319 0.83484 1 46315 2366 29204 29217 53362 53362 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS UPN48_class_I_Rep_3 7 616.802978515625 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 59.656 1 63.173 62.673 63.673 3.5169 0 0 0 0.098423 1 13039 13039 24.991 5.629 1 46316 2366 29204 29217 53363 53363 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS UPN48_class_I_Rep_3 7 616.8013916015625 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 59.724 1 63.241 62.741 63.741 3.5169 0 0 0 0.34878 1 13059 13059 8.1555 1.0538 1 46317 2366 29204 29217 53364 53364 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS UPN48_class_I_Rep_3 7 616.80126953125 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 59.887 1 63.404 62.904 63.904 3.5169 0 0 0 0.3824 1 13110 13110 4.897 0.70751 1 46318 2366 29204 29217 53365 53365 -0.019191932191688466 TYFSTPLLL 9 Unmodified _TYFSTPLLL_ 0 0 0 ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF ENSG00000146701|ENST00000315758|MDH2 ENSG00000146701|ENST00000315758|MDH2 MULTI-MSMS UPN48_class_I_Rep_1 5 527.7947387695312 2 527.794601 1053.57465 0.31714 0.00016739 0.10555 5.5711E-05 0.4227 0.0002231 527.7946029647228 86.946 0.19844 90.559 90.428 90.626 3.613 34 26 2 0 0 0 0.09884 1 20829 20829 34.102 5.6156 1 125160 46319 3441 29205 29218 53366 53366 0.05000395388583456 TYFSTPLLL 9 Unmodified _TYFSTPLLL_ 0 0 0 ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF ENSG00000146701|ENST00000315758|MDH2 ENSG00000146701|ENST00000315758|MDH2 MSMS UPN48_class_I_Rep_1 5 527.7952880859375 2 527.794601 1053.57465 NaN NaN NaN NaN NaN NaN NaN 87.058 1 90.677 90.177 91.177 3.6187 0 0 0 0.041661 1 20858 20858 39.957 5.8549 1 46320 3441 29205 29218 53367 53367 0.05000395388583456 TYFSTPLLL 9 Unmodified _TYFSTPLLL_ 0 0 0 ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF ENSG00000146701|ENST00000315758|MDH2 ENSG00000146701|ENST00000315758|MDH2 MSMS UPN48_class_I_Rep_1 5 527.7951049804688 2 527.794601 1053.57465 NaN NaN NaN NaN NaN NaN NaN 87.065 1 90.684 90.184 91.184 3.6187 0 0 0 0.066339 1 20860 20860 32.305 5.4218 1 46321 3441 29205 29218 53368 53368 0.05000395388583456 TYFVVIYTFY 10 Unmodified _TYFVVIYTFY_ 0 0 0 REV__Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|54|3|sense REV__Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|54|3|sense MSMS UPN48_class_I_Rep_1 5 439.2265625 3 439.225152 1314.65363 NaN NaN NaN NaN NaN NaN NaN 39.331 1 42.835 42.335 43.335 3.5048 0 0 0 0.53105 1 6931 6931 5.7834 1.2546 1 + 46322 32320 29206 29219 53369 53369 0.008886226228696614 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS UPN48_class_I_Rep_1 5 567.2796020507812 2 567.279315 1132.54408 0.56882 0.00032268 -0.096004 -5.4461E-05 0.47282 0.00026822 567.2793428928119 61.691 2.5665 65.159 64.639 67.206 3.4678 650 208 5 0 0 0 8.5747E-06 17 13771 13695;13735;13771;13808;13848;13885;13925;13965;14005;14044;14089;14136;14179;14220;14309;14316;14359 160.69 76.346 1 11820000 46323 3587 29207 29220 53370;53371;53372;53373;53374;53375;53376;53377;53378;53379;53380;53381;53382;53383;53384;53385;53386 53372 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS UPN48_class_I_Rep_2 6 567.2797241210938 2 567.279315 1132.54408 0.54413 0.00030867 -0.077798 -4.4133E-05 0.46633 0.00026454 567.2793560306756 61.602 2.7405 65.076 64.569 67.309 3.4738 606 217 5 0 0 0 0.0039863 18 13724 13645;13687;13724;13760;13795;13836;13875;13915;13958;13997;14041;14082;14119;14162;14205;14225;14265;14300 148.27 69.54 1 10960000 46324 3587 29207 29220 53387;53388;53389;53390;53391;53392;53393;53394;53395;53396;53397;53398;53399;53400;53401;53402;53403;53404 53389 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MSMS UPN48_class_I_Rep_2 6 567.2794799804688 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 64.277 1 67.751 67.251 68.251 3.4743 0 0 0 0.31276 1 14518 14518 10.074 2.9722 1 46325 3587 29207 29220 53405 53405 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS UPN48_class_I_Rep_3 7 567.27978515625 2 567.279315 1132.54408 0.45295 0.00025695 0.034062 1.9323E-05 0.48702 0.00027627 567.2794352680598 61.459 2.1956 64.972 64.475 66.67 3.5128 586 178 5 0 0 0 0.0039863 15 13534 13534;13574;13610;13648;13688;13725;13765;13801;13839;13875;13922;13967;14003;14044;14083 148.27 76.346 1 11840000 46326 3587 29207 29220 53406;53407;53408;53409;53410;53411;53412;53413;53414;53415;53416;53417;53418;53419;53420 53406 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS UPN48_class_I_Rep_3 7 567.2778930664062 2 567.279315 1132.54408 0.46682 0.00026482 0.071877 4.0775E-05 0.5387 0.00030559 567.2793195952758 63.235 0.4201 66.744 66.667 67.087 3.5091 50 34 2 0 0 0 0.32682 1 14185 14185 12.241 2.8575 1 197260 46327 3587 29207 29220 53421 53421 -0.016893829964601537 TYGHLPVLSF 10 Unmodified _TYGHLPVLSF_ 0 0 0 REV__L1ME3Cz_dup11511|chr19:41614068-41614244:-|1.0620558543023757|0.4154614923832415|1.35|150.0|10|2|anti-sense REV__L1ME3Cz_dup11511|chr19:41614068-41614244:-|1.0620558543023757|0.4154614923832415|1.35|150.0|10|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.303466796875 2 567.303124 1132.5917 0.52144 0.00029582 -0.28205 -0.00016001 0.23939 0.00013581 567.3029232997898 64.713 0.37774 68.192 67.984 68.362 3.4792 42 26 2 0 0 0 0.48573 1 14659 14659 13.042 0 1 122190 + 46328 28105 29208 29221 53422 53422 0.030703159943641367 TYGPITVTI 9 Unmodified _TYGPITVTI_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MULTI-MSMS UPN48_class_I_Rep_1 5 482.7711486816406 2 482.771126 963.527698 0.17314 8.3585E-05 -0.1568 -7.5697E-05 0.016338 7.8876E-06 482.7709719089403 69.839 0.41457 73.299 73.058 73.472 3.4598 45 30 2 0 0 0 0.11683 5 16199 16158;16199;16243;16247;16254 30.637 9.8246 1 164530 46329 4582 29209 29222 53423;53424;53425;53426;53427 53424 0.04447535837448413 TYGPITVTI 9 Unmodified _TYGPITVTI_ 0 0 0 ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW ENSG00000172543|ENST00000307886|CTSW MULTI-MSMS UPN48_class_I_Rep_3 7 482.77105712890625 2 482.771126 963.527698 0.28661 0.00013837 -0.17874 -8.6291E-05 0.10787 5.2077E-05 482.77090358649326 69.599 0.46782 73.112 72.918 73.386 3.5128 63 39 2 0 0 0 0.056917 2 16042 16042;16085 46.021 8.047 1 122550 46330 4582 29209 29222 53428;53429 53428 0.04447535837448413 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MSMS UPN48_class_I_Rep_1 5 493.73516845703125 2 493.734543 985.454533 NaN NaN NaN NaN NaN NaN NaN 73.301 1 76.782 76.282 77.282 3.4812 0 0 0 0.19137 1 17264 17264 16.942 2.3606 1 46331 4473 29210 29223 53430 53430 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MSMS UPN48_class_I_Rep_2 6 493.7349548339844 2 493.734543 985.454533 0.26516 0.00013092 -0.4008 -0.00019789 -0.13564 -6.6968E-05 493.73442667128296 73.019 0.2392 76.584 76.53 76.77 3.5645 32 24 2 0 0 0 0.32219 1 17152 17152 12.532 0 1 73656 46332 4473 29210 29223 53431 53431 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MSMS UPN48_class_I_Rep_3 7 493.734130859375 2 493.734543 985.454533 0.29919 0.00014772 -0.4809 -0.00023744 -0.18171 -8.9716E-05 493.73437114916396 73.043 0.48667 76.58 76.369 76.855 3.5373 72 45 2 0 0 0 0.11897 3 17127 17050;17089;17127 30.225 30.225 1 93097 46333 4473 29210 29223 53432;53433;53434 53434 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-4|RALGAPB MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 493.734543 985.454533 0.26516 0.00013092 -0.4008 -0.00019789 -0.13564 -6.6968E-05 493.73442667128296 73.019 0.2392 76.584 76.53 76.77 3.5645 0.0019376 4.3904E-05 NaN 30.225 32 24 2 NaN NaN NaN NaN 0 NaN NaN 0 73656 46334 4473 29210 29223 -0.03877592885191916 TYHAQGSVEVI 11 Unmodified _TYHAQGSVEVI_ 0 0 0 REV__ENSG00000126790|ENST00000247194|L3HYPDH REV__ENSG00000126790|ENST00000247194|L3HYPDH MULTI-MSMS UPN47_class_I_Rep_3 4 602.3041381835938 2 602.303852 1202.59315 0.43981 0.0002649 0.088848 5.3513E-05 0.52866 0.00031841 602.3038409862996 65.68 0.9099 68.859 68.633 69.543 3.1795 116 58 3 0 0 0 0.67264 1 15983 15983 1.1933 1.1933 1 469830 + 46335 18866 29211 29224 53435 53435 -4.094707514923357E-05 TYHELSHIY 9 Unmodified _TYHELSHIY_ 0 0 0 REV__L1ME3E_dup3826|chr15:65785940-65786319:+|1.3990226544321358|0.0119782160285588|6.87|151.0|5|1|sense REV__L1ME3E_dup3826|chr15:65785940-65786319:+|1.3990226544321358|0.0119782160285588|6.87|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.7803955078125 2 581.780013 1161.54547 -0.038669 -2.2497E-05 0.18105 0.00010533 0.14238 8.2833E-05 581.7800548489878 38.555 2.2626 42.22 41.78 44.043 3.6652 361 161 4 0 0 0 0.17468 2 7823 7326;7823 23.148 7.3012 1 896330 + 46336 28161 29212 29225 53436;53437 53437 -0.028837489076977363 TYHELSHIY 9 Unmodified _TYHELSHIY_ 0 0 0 REV__L1ME3E_dup3826|chr15:65785940-65786319:+|1.3990226544321358|0.0119782160285588|6.87|151.0|5|1|sense REV__L1ME3E_dup3826|chr15:65785940-65786319:+|1.3990226544321358|0.0119782160285588|6.87|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.7796020507812 2 581.780013 1161.54547 0.045194 2.6293E-05 0.17308 0.0001007 0.21827 0.00012699 581.7800540568915 38.922 2.2633 42.301 41.894 44.157 3.3785 333 147 3 0 0 0 0.32219 3 7899 7899;7935;8044 12.532 0 1 703400 + 46337 28161 29212 29225 53438;53439;53440 53438 -0.028837489076977363 TYHELSHIY 9 Unmodified _TYHELSHIY_ 0 0 0 REV__L1ME3E_dup3826|chr15:65785940-65786319:+|1.3990226544321358|0.0119782160285588|6.87|151.0|5|1|sense REV__L1ME3E_dup3826|chr15:65785940-65786319:+|1.3990226544321358|0.0119782160285588|6.87|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.7803955078125 2 581.780013 1161.54547 -0.042504 -2.4728E-05 0.2726 0.00015859 0.2301 0.00013387 581.7800800259877 39.071 2.2732 42.309 41.864 44.137 3.2379 351 154 4 0 0 0 0.32219 2 8112 8112;8152 12.532 0 1 595250 + 46338 28161 29212 29225 53441;53442 53441 -0.028837489076977363 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1 ENST00000533739.1_1_11:89951170-89956122:-|nuORF ENST00000533739.1_1_11:89951170-89956122:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 508.76361083984375 2 508.763635 1015.51272 0.36819 0.00018732 -0.25917 -0.00013186 0.10902 5.5466E-05 508.76337990423957 52.92 0.58788 56.53 56.316 56.904 3.6098 45 35 2 0 0 0 0.23311 2 11101 11045;11101 18.135 6.8684 1 124230 46339 1932 29213 29226 53443;53444 53444 0.0055808876010132735 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1 ENST00000533739.1_1_11:89951170-89956122:-|nuORF ENST00000533739.1_1_11:89951170-89956122:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 508.76336669921875 2 508.763635 1015.51272 0.13555 6.8963E-05 -0.13504 -6.8702E-05 0.00051313 2.6106E-07 508.763488167486 53.031 0.68247 56.614 56.199 56.881 3.5836 64 41 2 0 0 0 0.32219 1 11051 11051 12.532 4.6214 1 185650 46340 1932 29213 29226 53445 53445 0.0055808876010132735 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1 ENST00000533739.1_1_11:89951170-89956122:-|nuORF ENST00000533739.1_1_11:89951170-89956122:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 508.763635 1015.51272 0.24678 0.00012555 -0.23377 -0.00011894 0.013009 6.6186E-06 508.763361965117 53.121 0.66064 56.64 56.256 56.917 3.5192 0.045239 -2.0276E-05 NaN 18.135 81 46 2 NaN NaN NaN NaN 0 NaN NaN 0 175280 46341 1932 29213 29226 0.0055808876010132735 TYHSCLKIHV 10 Unmodified _TYHSCLKIHV_ 0 0 0 REV__Tigger1_dup4621|chr6:2400767-2402357:+|1.309431008797216|0.2325243003819036|2.49|151.0|89|3|anti-sense REV__Tigger1_dup4621|chr6:2400767-2402357:+|1.309431008797216|0.2325243003819036|2.49|151.0|89|3|anti-sense MSMS UPN48_class_I_Rep_1 5 601.1883544921875 2 600.813333 1199.61211 NaN NaN NaN NaN NaN NaN NaN 36.776 1 40.283 39.783 40.783 3.507 0 0 0 0.53105 1 6176 6176 1.6526 0 1 + 46342 32451 29214 29227 53446 53446 0.020291633825308963 TYIIKNRMM 9 Unmodified _TYIIKNRMM_ 0 0 0 REV__L1MC4a_dup7596|chr13:44546185-44546749:+|1.087886404468202|0.1049708079709026|3.37|150.0|8|2|sense REV__L1MC4a_dup7596|chr13:44546185-44546749:+|1.087886404468202|0.1049708079709026|3.37|150.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 585.3135375976562 2 585.312112 1168.60967 NaN NaN NaN NaN NaN NaN NaN 111.91 1 115.43 114.93 115.93 3.5207 0 0 0 0.40038 1 27482 27482 0.6015 0 1 + 46343 27021 29215 29228 53447 53447 0.032109916532135685 TYIILVLKKR 10 Unmodified _TYIILVLKKR_ 0 0 0 ENST00000186436.9_1_2:98475819-98543905:-|nuORF ENST00000186436.9_1_2:98475819-98543905:-|nuORF ENST00000186436.9_1_2:98475819-98543905:-|nuORF MSMS UPN46_class_I_Rep_3 1 623.91650390625 2 623.915916 1245.81728 NaN NaN NaN NaN NaN NaN NaN 107.82 1 107.82 107.32 108.32 0 0 0 0 0.53105 1 26302 26302 1.6526 0 1 46344 5855 29216 29229 53448 53448 0.20420265184407072 TYINEYIEK 9 Unmodified _TYINEYIEK_ 0 0 0 L1MB7_dup18356|chr15:76220366-76221513:+|1.824017310167476|0.3396548735574581|2.42|151.0|27|2|sense L1MB7_dup18356|chr15:76220366-76221513:+|1.824017310167476|0.3396548735574581|2.42|151.0|27|2|sense L1MB7_dup18356|chr15:76220366-76221513:+|1.824017310167476|0.3396548735574581|2.42|151.0|27|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.7969360351562 2 586.795329 1171.5761 0.43778 0.00025689 0.51762 0.00030373 0.9554 0.00056062 586.7955956078745 53.574 0.83242 57.093 56.795 57.627 3.5192 137 60 3 0 0 0 0.38714 2 11372 11372;11418 8.7454 0.58988 1 382800 46345 10760 29217 29230 53449;53450 53449 -0.002820153133598069 TYINPFVSF 9 Unmodified _TYINPFVSF_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MSMS UPN48_class_I_Rep_2 6 544.2772827148438 2 544.276575 1086.5386 NaN NaN NaN NaN NaN NaN NaN 85.348 1 89.053 88.553 89.553 3.7058 0 0 0 0.10427 1 20294 20294 23.79 4.5328 1 46346 3118;2053 29218 29231 53451 53451 -0.0012106178828616976 TYIQILESF 9 Unmodified _TYIQILESF_ 0 0 0 ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|4|intron;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|5|intron;nc|ENSG00000187790|Q8IYD8-2|FANCM;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|1|intron;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|2|intron;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|3|intron;nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|4|intron ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|4|intron MSMS UPN48_class_I_Rep_2 6 557.2948608398438 2 557.294965 1112.57538 NaN NaN NaN NaN NaN NaN NaN 89.173 1 92.911 92.411 93.411 3.7379 0 0 0 0.16861 1 21236 21236 18.373 2.224 1 46347 5208 29219 29232 53452 53452 0.023591900376231933 TYIQILESF 9 Unmodified _TYIQILESF_ 0 0 0 ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|4|intron;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|5|intron;nc|ENSG00000187790|Q8IYD8-2|FANCM;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|1|intron;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|2|intron;ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|3|intron;nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|4|intron ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|4|intron MSMS UPN48_class_I_Rep_2 6 557.293701171875 2 557.294965 1112.57538 NaN NaN NaN NaN NaN NaN NaN 89.203 1 92.941 92.441 93.441 3.7379 0 0 0 0.10979 1 21243 21243 22.658 0 1 46348 5208 29219 29232 53453 53453 0.023591900376231933 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MULTI-MSMS UPN48_class_I_Rep_1 5 618.3129272460938 2 618.314023 1234.61349 0.46572 0.00028796 -0.13447 -8.3144E-05 0.33126 0.00020482 618.3139876731608 72.842 0.26382 76.315 76.145 76.409 3.4732 31 17 3 0 0 0 0.1249 3 17116 17099;17116;17123 29.082 15.176 1 68396 46349 5500 29220 29233 53454;53455;53456 53455 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS UPN48_class_I_Rep_2 6 618.3131713867188 2 618.314023 1234.61349 NaN NaN NaN NaN NaN NaN NaN 72.44 1 76.004 75.504 76.504 3.5645 0 0 0 0.22485 1 16954 16954 14.838 4.0143 1 46350 5500 29220 29233 53457 53457 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS UPN48_class_I_Rep_2 6 618.3148193359375 2 618.314023 1234.61349 NaN NaN NaN NaN NaN NaN NaN 72.551 1 76.115 75.615 76.615 3.5645 0 0 0 0.10315 1 16986 16986 24.021 13.197 1 46351 5500 29220 29233 53458 53458 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS UPN48_class_I_Rep_2 6 618.3140869140625 2 618.314023 1234.61349 NaN NaN NaN NaN NaN NaN NaN 72.723 1 76.287 75.787 76.787 3.5645 0 0 0 0.17222 1 17037 17037 18.146 7.3224 1 46352 5500 29220 29233 53459 53459 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MULTI-MSMS UPN48_class_I_Rep_3 7 618.8160400390625 2 618.314023 1234.61349 0.63467 0.00039243 -0.8774 -0.00054251 -0.24273 -0.00015008 619.3159498483586 72.425 0.16164 75.952 75.884 76.046 3.5266 24 14 3 0 0 0 0.13244 1 16878 16878 27.629 6.7576 1 81534 46353 5500 29220 29233 53460 53460 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS UPN48_class_I_Rep_3 7 618.3143310546875 2 618.314023 1234.61349 NaN NaN NaN NaN NaN NaN NaN 72.488 1 76.023 75.523 76.523 3.5351 0 0 0 0.17222 1 16899 16899 18.146 8.0724 1 46354 5500 29220 29233 53461 53461 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-3|INPP5B MSMS UPN48_class_I_Rep_3 7 618.31494140625 2 618.314023 1234.61349 NaN NaN NaN NaN NaN NaN NaN 72.836 1 76.373 75.873 76.873 3.5373 0 0 0 0.38784 1 17005 17005 3.5965 1.7523 1 46355 5500 29220 29233 53462 53462 0.005571207429284186 TYIQYFRW 8 Unmodified _TYIQYFRW_ 0 0 0 REV__HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|116|2|anti-sense REV__HERVK22-int_dup107|chr5:37087758-37090124:+|1.205399388531025|0.1036247999197489|3.54|150.0|116|2|anti-sense MSMS UPN48_class_I_Rep_3 7 588.79248046875 2 588.795466 1175.57638 NaN NaN NaN NaN NaN NaN NaN 35.793 1 39.46 38.96 39.96 3.6667 0 0 0 0.40643 1 5850 5850 2.0598 0.73022 1 + 46356 23805 29221 29234 53463 53463 -0.004385508028008189 TYISWELEK 9 Unmodified _TYISWELEK_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|151|3|sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|151|3|sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|151|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.7982788085938 2 584.797872 1167.58119 0.41906 0.00024507 -0.35064 -0.00020505 0.068425 4.0015E-05 584.79780490584 57.164 0.62581 60.706 60.511 61.137 3.5427 91 58 2 0 0 0 0.32682 1 12228 12228 12.241 0 1 168470 46357 10998 29222 29235 53464 53464 0.0041028854927844804 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN48_class_I_Rep_1 5 584.7981567382812 2 584.797872 1167.58119 0.50962 0.00029802 -0.64986 -0.00038004 -0.14024 -8.2014E-05 584.7977545664362 57.343 0.56119 60.838 60.628 61.189 3.4942 73 49 2 0 0 0 0.026395 3 12416 12378;12416;12457 59.368 7.7386 1 212880 46358 2611 29223 29236 53465;53466;53467 53466 0.004102885493011854 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN48_class_I_Rep_2 6 584.7997436523438 2 584.797872 1167.58119 0.58372 0.00034136 -0.3887 -0.00022731 0.19502 0.00011405 584.7978747370596 57.462 0.67349 60.976 60.607 61.281 3.5142 65 52 2 0 0 0 0.16799 5 12417 12343;12383;12417;12427;12440 23.79 5.3306 1 188020 46359 2611 29223 29236 53468;53469;53470;53471;53472 53470 0.004102885493011854 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;VPS13C|p.H3623Lfs*34|1|0.09|ENSG00000129003|chr15:61863524-61863524|T/-|frameshift_variant;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN48_class_I_Rep_3 7 584.798583984375 2 584.797872 1167.58119 0.41906 0.00024507 -0.35064 -0.00020505 0.068425 4.0015E-05 584.79780490584 57.164 0.62581 60.706 60.511 61.137 3.5427 91 58 2 0 0 0 0.095207 2 12313 12277;12313 34.932 3.6637 1 168470 46360 2611 29223 29236 53473;53474 53474 0.004102885493011854 TYIWKKKF 8 Unmodified _TYIWKKKF_ 0 0 0 L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|20|1|sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|20|1|sense L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 557.327880859375 2 557.326402 1112.63825 NaN NaN NaN NaN NaN NaN NaN 51.992 1 51.992 51.492 52.492 0 0 0 0 0.40404 1 11088 11088 5.2307 0.47466 1 46361 12268 29224 29237 53475 53475 0.0864380061632346 TYIYIKQDE 9 Unmodified _TYIYIKQDE_ 0 0 0 REV__ENSG00000154237|ENST00000388948|LRRK1 REV__ENSG00000154237|ENST00000388948|LRRK1 MULTI-MSMS UPN48_class_I_Rep_3 7 586.795654296875 2 586.795329 1171.5761 0.35723 0.00020962 0.62274 0.00036542 0.97997 0.00057504 586.7956066654069 53.532 0.83696 57.116 56.8 57.637 3.5836 135 64 3 0 0 0 0.16559 1 11114 11114 24.021 1.3625 1 355920 + 46362 19733 29225 29238 53476 53476 -0.002820153132915948 TYIYWITTY 9 Unmodified _TYIYWITTY_ 0 0 0 REV__L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|32|3|sense REV__L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|32|3|sense MSMS UPN48_class_I_Rep_3 7 612.3009643554688 2 612.30279 1222.59103 NaN NaN NaN NaN NaN NaN NaN 57.926 1 61.458 60.958 61.958 3.5317 0 0 0 0.38639 1 12506 12506 3.9444 0.3479 1 + 46363 29409 29226 29239 53477 53477 -0.011365234453251105 TYIYWMLVF 9 Unmodified _TYIYWMLVF_ 0 0 0 REV__L1PA16_dup10516|chr12:11720451-11721713:+|6.1817160544011065|0.0283819020081583|7.77|151.0|9|1|sense REV__L1PA16_dup10516|chr12:11720451-11721713:+|6.1817160544011065|0.0283819020081583|7.77|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 618.3140869140625 2 618.312103 1234.60965 NaN NaN NaN NaN NaN NaN NaN 72.962 1 76.435 75.935 76.935 3.4732 0 0 0 0.39326 1 17161 17161 2.3027 0.4585 1 + 46364 29316 29227 29240 53478 53478 0.0017331492485936906 TYKCFMIW 8 Unmodified _TYKCFMIW_ 0 0 0 MLT1D_dup20160|chr21:37399924-37400408:-|1.213983763968161|0.0141234733865854|6.43|151.0|1|1|sense MLT1D_dup20160|chr21:37399924-37400408:-|1.213983763968161|0.0141234733865854|6.43|151.0|1|1|sense MLT1D_dup20160|chr21:37399924-37400408:-|1.213983763968161|0.0141234733865854|6.43|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 546.302490234375 2 546.256274 1090.49799 NaN NaN NaN NaN NaN NaN NaN 43.448 1 47.136 46.636 47.636 3.6875 0 0 0 0.40738 1 8935 8935 0.79363 0 1 46365 16347 29228 29241 53479 53479 -0.04363442703925102 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN48_class_I_Rep_1 5 582.2848510742188 2 582.284597 1162.55464 0.50465 0.00029385 -0.094684 -5.5133E-05 0.40997 0.00023872 582.2844972511764 65.453 0.76574 68.906 68.574 69.34 3.4532 127 53 3 0 0 0 0.0053074 6 14901 14865;14901;14936;14979;14998;15000 79.596 41.622 1 524700 46366 5749 29229 29242 53480;53481;53482;53483;53484;53485 53481 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN48_class_I_Rep_2 6 582.2850341796875 2 582.284597 1162.55464 0.50942 0.00029663 -0.1058 -6.1605E-05 0.40362 0.00023502 582.2844752959618 65.317 0.74171 68.797 68.465 69.207 3.4792 131 53 3 0 0 0 0.038999 5 14812 14812;14851;14888;14924;14933 53.404 16.958 1 432370 46367 5749 29229 29242 53486;53487;53488;53489;53490 53486 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN48_class_I_Rep_3 7 582.284912109375 2 582.284597 1162.55464 0.52693 0.00030683 -0.023423 -1.3639E-05 0.50351 0.00029319 582.2844963067781 65.189 0.82919 68.697 68.361 69.19 3.5077 131 55 4 0 0 0 0.0094161 5 14721 14682;14721;14758;14797;14830 70.332 32.358 1 495310 46368 5749 29229 29242 53491;53492;53493;53494;53495 53492 -0.02013400342048044 TYKEIAIKL 9 Unmodified _TYKEIAIKL_ 0 0 0 L1MB8_dup11124|chr11:76501228-76502194:+|2.941910361854484|0.2630071558196101|3.48|151.0|18|2|sense L1MB8_dup11124|chr11:76501228-76502194:+|2.941910361854484|0.2630071558196101|3.48|151.0|18|2|sense L1MB8_dup11124|chr11:76501228-76502194:+|2.941910361854484|0.2630071558196101|3.48|151.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.028564453125 2 539.828975 1077.6434 0.37169 0.00020065 -0.057008 -3.0775E-05 0.31468 0.00016987 539.8289400567509 45.971 0.89861 49.487 49.115 50.014 3.5162 90 60 2 0 0 0 0.50015 1 9082 9082 0.6015 0 1 177750 46369 10908 29230 29243 53496 53496 0.10768059688257381 TYKFNEIKRQA 11 Unmodified _TYKFNEIKRQA_ 0 0 0 L1M5_dup37866|chr11:94565752-94567280:+|1.6688634213431095|0.2030873813873541|3.04|151.0|23|2|sense L1M5_dup37866|chr11:94565752-94567280:+|1.6688634213431095|0.2030873813873541|3.04|151.0|23|2|sense L1M5_dup37866|chr11:94565752-94567280:+|1.6688634213431095|0.2030873813873541|3.04|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 466.58905029296875 3 466.589376 1396.7463 0.094547 4.4114E-05 -0.35595 -0.00016608 -0.2614 -0.00012197 466.5891899066374 53.623 0.73434 57.137 56.681 57.416 3.5143 84 52 2 0 0 0 0.67649 1 11303 11303 0.84494 0.84494 1 132950 46370 9154 29231 29244 53497 53497 0.0637952040892742 TYKFNEIKRQA 11 Unmodified _TYKFNEIKRQA_ 0 0 0 L1M5_dup37866|chr11:94565752-94567280:+|1.6688634213431095|0.2030873813873541|3.04|151.0|23|2|sense L1M5_dup37866|chr11:94565752-94567280:+|1.6688634213431095|0.2030873813873541|3.04|151.0|23|2|sense L1M5_dup37866|chr11:94565752-94567280:+|1.6688634213431095|0.2030873813873541|3.04|151.0|23|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 466.589376 1396.7463 0.05119 2.3885E-05 -0.36842 -0.0001719 -0.31723 -0.00014802 466.58914570300425 53.53 0.55721 57.114 56.708 57.265 3.5836 -0.011883 -8.8242E-06 NaN 0.84494 59 40 2 NaN NaN NaN NaN 0 NaN NaN 0 112690 46371 9154 29231 29244 0.0637952040892742 TYKFRERD 8 Unmodified _TYKFRERD_ 0 0 0 HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|43|2|sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|43|2|sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 557.786376953125 2 557.78563 1113.55671 NaN NaN NaN NaN NaN NaN NaN 93.984 1 93.984 93.484 94.484 0 0 0 0 0.40625 1 22792 22792 2.3027 0.65011 1 46372 8325 29232 29245 53498 53498 0.004470731864330446 TYKFRERD 8 Unmodified _TYKFRERD_ 0 0 0 HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|43|2|sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|43|2|sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|43|2|sense MSMS UPN48_class_I_Rep_1 5 557.7850341796875 2 557.78563 1113.55671 NaN NaN NaN NaN NaN NaN NaN 39.106 1 42.61 42.11 43.11 3.5048 0 0 0 0.4044 1 6863 6863 4.756 0.42677 1 46373 8325 29232 29245 53499 53499 0.004470731864330446 TYKGNPVRKTK 11 Unmodified _TYKGNPVRKTK_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 646.3772583007812 2 646.377686 1290.74082 0.50126 0.000324 -0.45375 -0.00029329 0.047508 3.0708E-05 646.3775254368348 94.337 0.41637 98.114 97.896 98.313 3.7761 126 56 3 0 0 0 0.65821 1 22433 22433 2.4985 0 1 244920 46374 13762 29233 29246 53500 53500 0.10707841617113445 TYKGNPVRKTK 11 Unmodified _TYKGNPVRKTK_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 646.3779296875 2 646.377686 1290.74082 0.65204 0.00042146 -0.29743 -0.00019225 0.35461 0.00022921 646.3777323678354 94.289 0.34011 98.19 98.003 98.343 3.9016 71 48 2 0 0 0 0.52578 1 22345 22345 7.1017 1.8048 1 258480 46375 13762 29233 29246 53501 53501 0.10707841617113445 TYKGNPVRKTK 11 Unmodified _TYKGNPVRKTK_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 646.3779907226562 2 646.377686 1290.74082 0.65109 0.00042085 -0.56823 -0.00036729 0.082859 5.3558E-05 646.377495985643 94.691 0.83511 98.592 98.343 99.179 3.9016 213 110 3 0 0 0 0.52578 2 22412 22412;22449 7.1017 3.8204 1 291280 46376 13762 29233 29246 53502;53503 53502 0.10707841617113445 TYKGNPVRKTK 11 Unmodified _TYKGNPVRKTK_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|133|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 646.377686 1290.74082 0.50115 0.00032393 -0.58408 -0.00037754 -0.082932 -5.3605E-05 646.3774580377727 94.686 0.62381 98.462 98.313 98.937 3.7761 -0.064876 -9.6847E-06 NaN 7.1017 127 87 2 NaN NaN NaN NaN 0 NaN NaN 0 276570 46377 13762 29233 29246 0.10707841617113445 TYKKTNKEKF 10 Unmodified _TYKKTNKEKF_ 0 0 0 ENSG00000159256|ENST00000400485|MORC3 ENSG00000159256|ENST00000400485|MORC3 ENSG00000159256|ENST00000400485|MORC3 MULTI-MSMS UPN46_class_I_Rep_3 1 644.3603515625 2 643.858795 1285.70304 0.68456 0.00044076 0.11721 7.5468E-05 0.80178 0.00051623 643.858385682062 62.79 0.4378 62.79 62.624 63.061 0 55 41 2 0 0 0 0.53004 1 14039 14039 8.1555 0.54658 1 232150 46378 3829 29234 29247 53504 53504 0.07161330631652163 TYKKVTKSK 9 Unmodified _TYKKVTKSK_ 0 0 0 REV__L1PA15-16_dup1045|chr12:62289739-62292684:-|1.6541511750814255|0.1464946483831737|3.5|151.0|30|1|sense REV__L1PA15-16_dup1045|chr12:62289739-62292684:-|1.6541511750814255|0.1464946483831737|3.5|151.0|30|1|sense MSMS UPN48_class_I_Rep_1 5 541.8344116210938 2 541.832049 1081.64954 NaN NaN NaN NaN NaN NaN NaN 54.715 1 58.223 57.723 58.723 3.5082 0 0 0 0.38639 1 11611 11611 3.9444 1.8846 1 + 46379 29302 29235 29248 53505 53505 0.1119857791979939 TYKLRIIVGVF 11 Unmodified _TYKLRIIVGVF_ 0 0 0 MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|10|2|sense MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|10|2|sense MER44B_dup1108|chr8:65735956-65736416:-|3.1103276895706347|0.2255093674567008|3.79|151.0|10|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 437.2677001953125 3 436.939458 1307.79654 -0.034565 -1.5103E-05 0.84402 0.00036879 0.80946 0.00035368 436.9396011537463 51.6 0.39227 55.122 54.825 55.217 3.5227 38 31 2 0 0 0 22.551 1 10598 10598 1.4551 0.75745 1 201010 46380 15979 29236 29249 53506 53506 0.1549567480474252 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.8030395507812 2 549.301113 1096.58767 0.53895 0.00029604 -0.14802 -8.1306E-05 0.39093 0.00021474 549.3009138539799 101.01 0.29797 104.81 104.55 104.85 3.7942 75 44 2 0 0 0 0.43982 1 24929 24929 5.7319 0 1 142770 + 46381 30631 29237 29250 53507 53507 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.3018798828125 2 549.301113 1096.58767 0.61719 0.00033903 -0.21006 -0.00011539 0.40713 0.00022364 549.3009561568156 100.56 0.16875 104.07 104 104.17 3.5062 34 25 2 0 0 0 0.43982 1 24583 24583 5.7319 0 1 95158 + 46382 30631 29237 29250 53508 53508 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 549.300537109375 2 549.301113 1096.58767 0.61725 0.00033906 -0.019532 -1.0729E-05 0.59772 0.00032833 549.3009480819878 100.93 0.49387 104.43 104.17 104.66 3.5063 107 74 2 0 0 0 0.43982 1 24668 24668 5.7319 0 1 143710 + 46383 30631 29237 29250 53509 53509 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 549.301513671875 2 549.301113 1096.58767 0.46755 0.00025682 -0.096402 -5.2954E-05 0.37115 0.00020387 549.3008991840696 99.348 0.58512 102.95 102.54 103.12 3.6065 153 77 3 0 0 0 0.37599 5 23978 23879;23890;23913;23947;23978 9.3831 0 1 230780 + 46384 30631 29237 29250 53510;53511;53512;53513;53514 53514 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 549.3010864257812 2 549.301113 1096.58767 0.46566 0.00025579 0.074695 4.103E-05 0.54036 0.00029682 549.3011605595538 99.792 0.82528 103.4 103 103.82 3.6065 150 106 2 0 0 0 0.32682 1 24003 24003 12.241 2.8575 1 319280 + 46385 30631 29237 29250 53515 53515 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 549.3010864257812 2 549.301113 1096.58767 0.46702 0.00025654 -0.038056 -2.0904E-05 0.42897 0.00023563 549.3009223859302 100.94 0.70218 104.55 104.33 105.03 3.6084 173 95 3 0 0 0 0.37599 5 24368 24341;24368;24399;24428;24456 9.3831 0 1 283540 + 46386 30631 29237 29250 53516;53517;53518;53519;53520 53517 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 549.3010864257812 2 549.301113 1096.58767 0.46755 0.00025682 -0.096402 -5.2954E-05 0.37115 0.00020387 549.3008991840696 99.348 0.58512 102.95 102.54 103.12 3.6065 153 77 3 0 0 0 0.11642 1 24003 24003 12.241 2.8575 1 230780 + 46387 30631 29237 29250 53521 53521 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 549.8032836914062 2 549.301113 1096.58767 0.46702 0.00025654 -0.038056 -2.0904E-05 0.42897 0.00023563 549.3009223859302 100.94 0.70218 104.55 104.33 105.03 3.6084 173 95 3 0 0 0 0.12408 1 24473 24473 2.9952 0 1 283540 + 46388 30631 29237 29250 53522 53522 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.3007202148438 2 549.301113 1096.58767 0.48944 0.00026885 -0.071321 -3.9177E-05 0.41812 0.00022967 549.3009544416318 98.923 0.19639 102.69 102.54 102.74 3.7707 49 26 3 0 0 0 0.37599 1 23501 23501 9.3831 0 1 214390 + 46389 30631 29237 29250 53523 53523 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.3012084960938 2 549.301113 1096.58767 0.48933 0.00026879 -0.0047237 -2.5948E-06 0.48461 0.0002662 549.3010293032918 99.153 0.62244 102.92 102.74 103.36 3.7707 124 86 2 0 0 0 0.37599 5 23555 23529;23555;23582;23613;23646 9.3831 0 1 332320 + 46390 30631 29237 29250 53524;53525;53526;53527;53528 53525 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.30126953125 2 549.301113 1096.58767 0.4894 0.00026883 -0.4805 -0.00026394 0.0088989 4.8882E-06 549.3006622205081 101.05 0.13915 104.79 104.76 104.9 3.7416 25 18 2 0 0 0 0.43982 1 23992 23992 5.7319 0 1 136470 + 46391 30631 29237 29250 53529 53529 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 549.3011474609375 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 100.95 1 104.69 104.19 105.19 3.7417 0 0 0 0.32573 1 23964 23964 9.3831 0 1 + 46392 30631 29237 29250 53530 53530 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.301513671875 2 549.301113 1096.58767 0.42875 0.00023552 -0.16079 -8.8323E-05 0.26796 0.00014719 549.3009531334408 99.422 0.75703 103.31 102.65 103.4 3.8839 160 108 2 0 0 0 0.30034 8 23491 23407;23409;23436;23467;23491;23506;23517;23543 13.906 0 1 250420 + 46393 30631 29237 29250 53531;53532;53533;53534;53535;53536;53537;53538 53535 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 549.3010864257812 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 100.88 1 104.7 104.2 105.2 3.8153 0 0 0 0.32573 1 23870 23870 9.3831 0 1 + 46394 30631 29237 29250 53539 53539 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 549.30078125 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 101.08 1 104.89 104.39 105.39 3.8153 0 0 0 0.32573 1 23914 23914 9.3831 0 1 + 46395 30631 29237 29250 53540 53540 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 549.301113 1096.58767 0.53888 0.00029601 -0.055609 -3.0546E-05 0.48327 0.00026546 549.3010183490454 99.208 0.14014 103 102.89 103.03 3.7926 -0.14951 -1.9334E-05 NaN 13.906 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 72737 + 46396 30631 29237 29250 0.04324226500648365 TYKSTKNQK 9 Unmodified _TYKSTKNQK_ 0 0 0 REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense REV__L1PBa_dup1192|chr9:36413591-36414414:-|1.9873047912542687|0.0957667142233211|4.38|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 549.301113 1096.58767 0.61693 0.00033888 -0.33552 -0.0001843 0.28141 0.00015458 549.3007953479439 99.624 0.096184 103.12 103.04 103.14 3.4974 -0.028084 -0.00032685 NaN 13.906 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 165740 + 46397 30631 29237 29250 0.04324226500648365 TYKVISNEF 9 Unmodified _TYKVISNEF_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS UPN48_class_I_Rep_1 5 550.7850952148438 2 550.784764 1099.55498 0.47692 0.00026268 0.19274 0.00010616 0.66967 0.00036884 550.7848057608253 46.836 0.6894 50.356 50.004 50.693 3.5192 81 44 2 0 0 0 0.0062637 5 9169 9122;9128;9169;9211;9261 83.278 40.965 1 282510 46398 2066 29238 29251 53541;53542;53543;53544;53545 53543 0.009180193778092871 TYKVISNEF 9 Unmodified _TYKVISNEF_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS UPN48_class_I_Rep_2 6 550.7855224609375 2 550.784764 1099.55498 0.3979 0.00021916 0.29627 0.00016318 0.69417 0.00038234 550.7848982865144 46.49 0.73653 50.24 49.963 50.7 3.7494 84 46 2 0 0 0 0.0073658 4 9079 9036;9079;9122;9167 111.31 54.06 1 252970 46399 2066 29238 29251 53546;53547;53548;53549 53547 0.009180193778092871 TYKVISNEF 9 Unmodified _TYKVISNEF_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS UPN48_class_I_Rep_3 7 550.7843627929688 2 550.784764 1099.55498 0.32973 0.00018161 0.49732 0.00027391 0.82705 0.00045553 550.7848667999945 46.693 0.64023 50.329 50.082 50.723 3.6363 85 38 3 0 0 0 0.020867 4 9120 9025;9074;9120;9168 62.869 28.152 1 227080 46400 2066 29238 29251 53550;53551;53552;53553 53552 0.009180193778092871 TYKWYCLY 8 Unmodified _TYKWYCLY_ 0 0 0 L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|37|1|anti-sense L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|37|1|anti-sense L1MD2_dup9352|chr16:89327638-89328570:+|1.6049620194654548|0.0464900264077466|5.11|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_3 7 570.2664794921875 2 570.265153 1138.51575 NaN NaN NaN NaN NaN NaN NaN 21.171 1 24.837 24.337 25.337 3.6667 0 0 0 0.40738 1 1941 1941 0.79363 0.10326 1 46401 12046 29239 29252 53554 53554 -0.04796404177409386 TYLANQFATA 10 Unmodified _TYLANQFATA_ 0 0 0 MER102a_dup781|chr5:32148030-32148309:-|2.074690840154019|0.1102613494925599|4.23|151.0|14|2|anti-sense MER102a_dup781|chr5:32148030-32148309:-|2.074690840154019|0.1102613494925599|4.23|151.0|14|2|anti-sense MER102a_dup781|chr5:32148030-32148309:-|2.074690840154019|0.1102613494925599|4.23|151.0|14|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 550.2747802734375 2 550.274564 1098.53457 0.53903 0.00029661 0.13156 7.2393E-05 0.67058 0.00036901 550.274599203032 62.677 0.23047 66.151 66.065 66.295 3.4738 27 15 3 0 0 0 0.84575 1 14031 14031 8.1555 1.4324 1 91215 46402 15756 29240 29253 53555 53555 -0.010751512819979325 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 539.8291625976562 2 539.828975 1077.6434 0.47324 0.00025547 0.12938 6.9842E-05 0.60261 0.00032531 539.8289840445235 45.859 0.80447 49.496 49.145 49.949 3.6369 89 57 2 0 0 0 0.12795 1 8874 8874 28.495 11.382 1 202900 46403 5192 29241 29254 53556 53556 0.10768059688280118 TYLEVRHSS 9 Unmodified _TYLEVRHSS_ 0 0 0 L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|44|2|sense L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|44|2|sense L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|44|2|sense MSMS UPN48_class_I_Rep_1 5 546.278564453125 2 546.277638 1090.54072 NaN NaN NaN NaN NaN NaN NaN 55.1 1 58.609 58.109 59.109 3.5082 0 0 0 0.38639 1 11728 11728 3.9444 0.3479 1 46404 14339 29242 29255 53557 53557 -0.0009263305046260939 TYLFNSSKTY 10 Unmodified _TYLFNSSKTY_ 0 0 0 L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|62|1|anti-sense L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|62|1|anti-sense L1MC4a_dup7938|chr14:50749992-50751565:-|1.3659483838665938|0.0196645787761941|6.12|151.0|62|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 612.30078125 2 612.300778 1222.587 0.58535 0.00035841 -0.60764 -0.00037206 -0.022292 -1.3649E-05 612.3000989853479 58.125 0.24622 61.624 61.472 61.719 3.4987 15 12 2 0 0 0 0.55724 1 12611 12611 4.5289 0.58447 1 358790 46405 11614 29243 29256 53558 53558 -0.015386129390435599 TYLFRQVGF 9 Unmodified _TYLFRQVGF_ 0 0 0 REV__ENSG00000137106|ENST00000318158|GRHPR REV__ENSG00000137106|ENST00000318158|GRHPR MULTI-MSMS UPN48_class_I_Rep_2 6 565.823974609375 2 565.803291 1129.59203 0.50466 0.00028554 -0.23649 -0.00013381 0.26818 0.00015173 565.8031070098161 67.277 0.72882 70.773 70.31 71.039 3.4964 80 50 2 0 0 0 0.47197 1 15325 15325 3.5965 0 1 188410 + 46406 19214 29244 29257 53559 53559 0.032417357142321634 TYLFYLTV 8 Unmodified _TYLFYLTV_ 0 0 0 L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|39|1|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|39|1|anti-sense L1MA4A_dup4069|chr10:21697923-21698867:-|3.1551428060271074|0.029379348511983|6.75|151.0|39|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7771911621094 2 510.276044 1018.53753 0.064291 3.2806E-05 -0.36585 -0.00018668 -0.30155 -0.00015388 510.27573138957035 66.41 0.85909 69.669 69.277 70.136 3.2588 137 55 3 0 0 0 0.82752 1 16064 16064 11.64 0 1 445170 46407 9803 29245 29258 53560 53560 0.029007238427993798 TYLHKKIKRV 10 Unmodified _TYLHKKIKRV_ 0 0 0 REV__L1PA16_dup13383|chr20:8177695-8179846:-|1.822919824578048|0.0403206280885491|5.5|151.0|40|2|sense REV__L1PA16_dup13383|chr20:8177695-8179846:-|1.822919824578048|0.0403206280885491|5.5|151.0|40|2|sense MSMS UPN46_class_I_Rep_3 1 643.4074096679688 2 643.408789 1284.80303 NaN NaN NaN NaN NaN NaN NaN 102.42 1 102.42 101.92 102.92 0 0 0 0 0.53105 1 24992 24992 1.4819 0 1 + 46408 29354 29246 29259 53561 53561 0.1720161275609371 TYLHLHDF 8 Unmodified _TYLHLHDF_ 0 0 0 L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 523.2587890625 2 523.258717 1044.50288 0.29094 0.00015223 -0.25058 -0.00013112 0.040352 2.1115E-05 523.2585362513596 44.38 0.81779 47.893 47.517 48.335 3.5132 102 59 2 0 0 0 0.82752 4 8496 8379;8421;8460;8496 14.582 2.0501 1 278210 46409 12538 29247 29260 53562;53563;53564;53565 53565 -0.017590992453051513 TYLHLHDF 8 Unmodified _TYLHLHDF_ 0 0 0 L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.2583618164062 2 523.258717 1044.50288 0.30684 0.00016056 -0.29254 -0.00015307 0.014302 7.4838E-06 523.2585242866494 44.04 0.86757 47.801 47.465 48.332 3.7617 153 63 3 0 0 0 0.82752 2 8310 8310;8351 13.508 1.8676 1 323190 46410 12538 29247 29260 53566;53567 53566 -0.017590992453051513 TYLHLHDF 8 Unmodified _TYLHLHDF_ 0 0 0 L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense L1ME2_dup9006|chr12:9757274-9757913:+|3.366577707752961|0.4150937237999529|3.02|150.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.2587890625 2 523.258717 1044.50288 0.33921 0.0001775 -0.27926 -0.00014613 0.059952 3.1371E-05 523.2585426138373 44.201 0.86192 47.839 47.503 48.365 3.6385 123 59 3 0 0 0 0.82752 2 8412 8277;8412 9.3474 1.4373 1 291580 46411 12538 29247 29260 53568;53569 53569 -0.017590992453051513 TYLHMNVQS 9 Unmodified _TYLHMNVQS_ 0 0 0 L1M5_dup12299|chr3:195324941-195325332:+|2.0503554867178777|0.0329620266705414|5.96|151.0|17|3|sense L1M5_dup12299|chr3:195324941-195325332:+|2.0503554867178777|0.0329620266705414|5.96|151.0|17|3|sense L1M5_dup12299|chr3:195324941-195325332:+|2.0503554867178777|0.0329620266705414|5.96|151.0|17|3|sense MSMS UPN48_class_I_Rep_1 5 546.7620849609375 2 546.760766 1091.50698 NaN NaN NaN NaN NaN NaN NaN 118.01 1 121.63 121.13 122.13 3.6215 0 0 0 0.3967 1 28771 28771 1.4819 0 1 46412 9092 29248 29261 53570 53570 -0.035113778139020724 TYLKAVKLF 9 Unmodified _TYLKAVKLF_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MSMS UPN48_class_I_Rep_1 5 541.8342895507812 2 541.83406 1081.65357 NaN NaN NaN NaN NaN NaN NaN 54.528 1 58.042 57.542 58.542 3.5143 0 0 0 0.10315 1 11554 11554 24.021 4.7636 1 46413 2968 29249 29262 53571 53571 0.11600667413495103 TYLKAVKLF 9 Unmodified _TYLKAVKLF_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MSMS UPN48_class_I_Rep_2 6 541.8335571289062 2 541.83406 1081.65357 NaN NaN NaN NaN NaN NaN NaN 54.474 1 58.056 57.556 58.556 3.5817 0 0 0 0.28335 1 11518 11518 11.64 3.047 1 46414 2968 29249 29262 53572 53572 0.11600667413495103 TYLNLITFV 9 Unmodified _TYLNLITFV_ 0 0 0 REV__L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|4|1|sense REV__L1MEg_dup13679|chr19:29959428-29960817:-|1.717713139788474|0.0127920560512051|7.07|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.3082275390625 2 542.307875 1082.6012 0.45888 0.00024886 -0.17282 -9.3721E-05 0.28606 0.00015514 542.3077223580891 81.795 0.43718 85.307 85.092 85.529 3.5122 76 49 2 0 0 0 0.47493 1 20469 20469 3.2813 0 1 197800 + 46415 28726 29250 29263 53573 53573 0.06320084279900584 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MSMS UPN48_class_I_Rep_1 5 556.3058471679688 2 556.305332 1110.59611 NaN NaN NaN NaN NaN NaN NaN 75.236 1 78.735 78.235 79.235 3.4996 0 0 0 0.16861 1 17814 17814 18.373 5.3306 1 46416 2939 29251 29264 53574 53574 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MSMS UPN48_class_I_Rep_1 5 556.3058471679688 2 556.305332 1110.59611 NaN NaN NaN NaN NaN NaN NaN 75.359 1 78.858 78.358 79.358 3.4996 0 0 0 0.056669 1 17849 17849 34.932 16.786 1 46417 2939 29251 29264 53575 53575 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MSMS UPN48_class_I_Rep_1 5 556.3056640625 2 556.305332 1110.59611 NaN NaN NaN NaN NaN NaN NaN 75.486 1 78.985 78.485 79.485 3.4996 0 0 0 0.036539 1 17885 17885 41.956 17.935 1 46418 2939 29251 29264 53576 53576 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MULTI-MSMS UPN48_class_I_Rep_2 6 556.305908203125 2 556.305332 1110.59611 0.49032 0.00027277 0.26642 0.00014821 0.75674 0.00042098 556.3055151749645 75.156 0.30687 78.746 78.492 78.798 3.59 47 34 2 0 0 0 0.048662 3 17717 17670;17682;17717 49.554 24.155 1 156820 46419 2939 29251 29264 53577;53578;53579 53579 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MULTI-MSMS UPN48_class_I_Rep_2 6 556.3054809570312 2 556.305332 1110.59611 0.49038 0.0002728 0.36531 0.00020323 0.85569 0.00047602 556.3055517110488 75.312 0.13875 78.902 78.805 78.944 3.59 26 14 2 0 0 0 0.26468 1 17750 17750 16.149 6.0752 1 152520 46420 2939 29251 29264 53580 53580 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MULTI-MSMS UPN48_class_I_Rep_2 6 556.3056030273438 2 556.305332 1110.59611 0.49051 0.00027287 -0.3889 -0.00021635 0.10161 5.6526E-05 556.3051181618296 75.45 0.12627 79.052 78.955 79.081 3.6011 16 14 2 0 0 0 0.22932 1 17788 17788 18.373 8.99 1 62724 46421 2939 29251 29264 53581 53581 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MULTI-MSMS UPN48_class_I_Rep_3 7 556.8053588867188 2 556.305332 1110.59611 0.44964 0.00025013 0.38912 0.00021647 0.83876 0.0004666 556.3054644531941 75.247 0.52464 78.813 78.553 79.078 3.5659 110 57 3 0 0 0 0.048662 6 17660 17601;17636;17660;17669;17702;17740 49.554 21.925 1 208040 46422 2939 29251 29264 53582;53583;53584;53585;53586;53587 53584 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C nc|ENSG00000135916|Q9NQX7-2|ITM2C MULTI-MATCH UPN48_class_I_Rep_3 7 2 556.305332 1110.59611 0.44802 0.00024924 0.41278 0.00022963 0.86081 0.00047887 556.3055147828085 75.702 0.025986 79.268 79.251 79.277 3.5658 0.10822 0.00081527 NaN 18.373 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 19241 46423 2939 29251 29264 0.045237804172757023 TYLQRLFG 8 Unmodified _TYLQRLFG_ 0 0 0 REV__nc|ENSG00000040933|Q96PE3-2|INPP4A REV__nc|ENSG00000040933|Q96PE3-2|INPP4A MSMS UPN48_class_I_Rep_1 5 499.275634765625 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.964 1 57.479 56.979 57.979 3.5143 0 0 0 0.40364 1 11379 11379 5.7604 1.0044 1 + 46424 17648 29252 29265 53588 53588 0.04085777651414446 TYLQRLFG 8 Unmodified _TYLQRLFG_ 0 0 0 REV__nc|ENSG00000040933|Q96PE3-2|INPP4A REV__nc|ENSG00000040933|Q96PE3-2|INPP4A MSMS UPN48_class_I_Rep_2 6 499.2767028808594 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.662 1 57.272 56.772 57.772 3.6098 0 0 0 0.40364 1 11268 11268 5.7604 0.52976 1 + 46425 17648 29252 29265 53589 53589 0.04085777651414446 TYLQRLFG 8 Unmodified _TYLQRLFG_ 0 0 0 REV__nc|ENSG00000040933|Q96PE3-2|INPP4A REV__nc|ENSG00000040933|Q96PE3-2|INPP4A MSMS UPN48_class_I_Rep_2 6 499.27557373046875 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 54.101 1 57.682 57.182 58.182 3.5817 0 0 0 0.40581 1 11403 11403 2.8892 0.58649 1 + 46426 17648 29252 29265 53590 53590 0.04085777651414446 TYLSIIHSL 9 Unmodified _TYLSIIHSL_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MSMS UPN48_class_I_Rep_1 5 523.79736328125 2 523.797675 1045.5808 NaN NaN NaN NaN NaN NaN NaN 67.417 1 70.868 70.368 71.368 3.4516 0 0 0 0.036836 1 15493 15493 41.84 5.7126 1 46427 2788 29253 29266 53591 53591 0.05982913620096042 TYLSIIHSL 9 Unmodified _TYLSIIHSL_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MULTI-SECPEP UPN48_class_I_Rep_3 7 524.2713623046875 2 523.797675 1045.5808 0.4762 0.00024943 -0.56209 -0.00029442 -0.085885 -4.4986E-05 523.7972097544963 67.194 0.50982 70.701 70.471 70.981 3.5077 58 42 2 0 0 0 0.0364 1 15298 15298 56.177 6.244 1 128140 46428 2788 29253 29266 53592 53592 0.05982913620096042 TYLSKRGFF 9 Unmodified _TYLSKRGFF_ 0 0 0 REV__L1MC3_dup6679|chr9:37152249-37153109:-|1.639260122944971|0.0397281695096241|5.37|150.0|48|2|anti-sense REV__L1MC3_dup6679|chr9:37152249-37153109:-|1.639260122944971|0.0397281695096241|5.37|150.0|48|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.8038330078125 2 559.803291 1117.59203 0.50615 0.00028334 -0.73863 -0.00041349 -0.23248 -0.00013014 559.8027255677746 69.067 0.71287 72.522 72.072 72.785 3.4548 90 54 2 0 0 0 0.37599 1 15975 15975 9.3831 0 1 178640 + 46429 26772 29254 29267 53593 53593 0.03793735714225477 TYLTKFIAR 9 Unmodified _TYLTKFIAR_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685958-7686162:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS UPN46_class_I_Rep_3 1 556.8271484375 2 556.826766 1111.63898 0.36127 0.00020116 0.01696 9.4436E-06 0.37823 0.00021061 556.8267068671626 51.714 0.60208 51.714 51.465 52.067 0 107 69 2 0 0 0 0.043452 3 11035 10965;11000;11035 51.63 8.4945 1 345780 46430 1162 29255 29268 53594;53595;53596 53596 0.08762595265375239 TYLTYIFKS 9 Unmodified _TYLTYIFKS_ 0 0 0 L1MC2_dup4498|chr12:45877697-45879738:-|3.182987867202137|0.0935724261773789|5.09|151.0|86|1|anti-sense L1MC2_dup4498|chr12:45877697-45879738:-|3.182987867202137|0.0935724261773789|5.09|151.0|86|1|anti-sense L1MC2_dup4498|chr12:45877697-45879738:-|3.182987867202137|0.0935724261773789|5.09|151.0|86|1|anti-sense MSMS UPN48_class_I_Rep_2 6 568.3076171875 2 568.305332 1134.59611 NaN NaN NaN NaN NaN NaN NaN 64.892 1 68.371 67.871 68.871 3.4792 0 0 0 0.39428 1 14708 14708 2.0598 0.57785 1 46431 11259 29256 29269 53597 53597 0.034197804172890756 TYLVIRHMC 9 Unmodified _TYLVIRHMC_ 0 0 0 L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|92|3|sense L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|92|3|sense L1ME3B_dup2419|chr5:64912850-64915055:+|1.0640789262808918|0.0494656273734507|4.43|151.0|92|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 568.2907104492188 2 568.291179 1134.56781 0.031716 1.8024E-05 -0.75095 -0.00042676 -0.71923 -0.00040873 568.2907816032504 42.979 0.55737 46.666 46.48 47.038 3.6875 67 38 2 0 0 0 0.48846 1 8829 8829 1.8442 0.36234 1 75256 46432 12703 29257 29270 53598 53598 0.005904359647047386 TYLVKNRV 8 Unmodified _TYLVKNRV_ 0 0 0 REV__L1MA6_dup1351|chr4:103063569-103064786:+|1.2895046551218794|0.313582338258782|2.04|151.0|27|2|sense REV__L1MA6_dup1351|chr4:103063569-103064786:+|1.2895046551218794|0.313582338258782|2.04|151.0|27|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2949523925781 2 496.798009 991.581465 0.14778 7.3419E-05 -1.6436 -0.00081651 -1.4958 -0.0007431 496.7972086854644 34.609 0.10553 34.609 34.524 34.629 0 9 7 2 0 0 0 0.72333 1 6183 6183 0.52476 0.066424 1 216560 + 46433 25436 29258 29271 53599 53599 0.08533753059805349 TYMFWRWLL 9 Unmodified _TYMFWRWLL_ 0 0 0 Tigger1_dup3199|chr4:78893863-78895288:-|1.7293474478397235|0.1151960946297069|3.91|151.0|73|2|anti-sense Tigger1_dup3199|chr4:78893863-78895288:-|1.7293474478397235|0.1151960946297069|3.91|151.0|73|2|anti-sense Tigger1_dup3199|chr4:78893863-78895288:-|1.7293474478397235|0.1151960946297069|3.91|151.0|73|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.2262878417969 3 439.226722 1314.65834 0.055233 2.426E-05 -0.60625 -0.00026628 -0.55101 -0.00024202 439.2265212004122 38.856 0.26672 42.512 42.402 42.668 3.6557 38 25 2 0 0 0 0.48007 1 6750 6750 2.7352 0.64919 1 96643 46434 33074 29259 29272 53600 53600 0.013592282846502712 TYMFWRWLL 9 Unmodified _TYMFWRWLL_ 0 0 0 Tigger1_dup3199|chr4:78893863-78895288:-|1.7293474478397235|0.1151960946297069|3.91|151.0|73|2|anti-sense Tigger1_dup3199|chr4:78893863-78895288:-|1.7293474478397235|0.1151960946297069|3.91|151.0|73|2|anti-sense Tigger1_dup3199|chr4:78893863-78895288:-|1.7293474478397235|0.1151960946297069|3.91|151.0|73|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 439.226722 1314.65834 0.074882 3.289E-05 -0.87471 -0.0003842 -0.79983 -0.00035131 439.22643711214187 38.666 0.12923 42.396 42.297 42.426 3.7297 -0.058026 -0.00026547 NaN 2.7352 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 80023 46435 33074 29259 29272 0.013592282846502712 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(77)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS UPN48_class_I_Rep_1 5 595.791748046875 2 595.791732 1189.56891 0.4082 0.0002432 -0.052603 -3.1341E-05 0.3556 0.00021186 595.7915941473377 46.898 0.8595 50.417 50.039 50.898 3.5192 134 53 3 0 0 0 0.0058741 4 9196 9158;9196;9235;9275 76.825 44.302 1 555120 46436 3435 29260 29273 53601;53602;53603;53604 53602 113 -0.018290711854206165 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(72)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS UPN48_class_I_Rep_2 6 595.7919311523438 2 595.791732 1189.56891 0.39118 0.00023306 -0.055181 -3.2876E-05 0.336 0.00020018 595.7917077428918 46.637 0.88779 50.386 49.963 50.851 3.7494 165 57 4 0 0 0 0.0073203 4 9121 9078;9121;9161;9205 71.708 37.306 1 560880 46437 3435 29260 29273 53605;53606;53607;53608 53606 113 -0.018290711854206165 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(71)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS UPN48_class_I_Rep_3 7 595.7919921875 2 595.791732 1189.56891 0.44781 0.0002668 0.015054 8.9689E-06 0.46287 0.00027577 595.7916450470542 46.916 0.89683 50.553 50.026 50.923 3.6363 140 55 3 0 0 0 0.0085073 4 9154 9072;9115;9154;9196 70.929 35.599 1 652740 46438 3435 29260 29273 53609;53610;53611;53612 53611 113 -0.018290711854206165 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS UPN48_class_I_Rep_1 5 588.2904052734375 2 587.794275 1173.574 0.50601 0.00029743 -4.2644 -0.0025066 -3.7583 -0.0022091 587.7943983828047 57.174 0.17641 60.668 60.547 60.723 3.4942 24 15 2 0 0 0 0.095207 2 12362 12354;12362 34.932 12.196 1 138880 46439 3435 29260 29274 53613;53614 53614 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_1 5 587.7948608398438 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.285 1 60.779 60.279 61.279 3.4942 0 0 0 0.040938 1 12399 12399 40.239 7.4535 1 46440 3435 29260 29274 53615 53615 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_1 5 587.7947387695312 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.419 1 60.913 60.413 61.413 3.4942 0 0 0 0.027993 1 12440 12440 47.594 14.809 1 46441 3435 29260 29274 53616 53616 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_1 5 587.7963256835938 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.466 1 60.96 60.46 61.46 3.4942 0 0 0 0.13613 1 12454 12454 20.415 2.2682 1 46442 3435 29260 29274 53617 53617 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_1 5 587.7946166992188 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.6 1 61.094 60.594 61.594 3.4942 0 0 0 0.28608 1 12494 12494 11.495 2.1116 1 46443 3435 29260 29274 53618 53618 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_2 6 587.7950439453125 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.136 1 60.65 60.15 61.15 3.5142 0 0 0 0.11827 1 12332 12332 21.537 1.0834 1 46444 3435 29260 29274 53619 53619 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_2 6 587.794921875 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.28 1 60.794 60.294 61.294 3.5142 0 0 0 0.036539 1 12376 12376 41.956 9.1699 1 46445 3435 29260 29274 53620 53620 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS UPN48_class_I_Rep_2 6 587.7947998046875 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 57.411 1 60.926 60.426 61.426 3.5142 0 0 0 0.092202 1 12415 12415 26.268 8.1218 1 46446 3435 29260 29274 53621 53621 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS UPN48_class_I_Rep_3 7 587.7944946289062 2 587.794275 1173.574 0.42689 0.00025092 -1.122 -0.00065948 -0.69507 -0.00040856 587.7944055906712 57.196 0.38745 60.739 60.664 61.052 3.5427 53 36 3 0 0 0 0.39745 1 12317 12317 8.1555 1.9497 1 123490 46447 3435 29260 29274 53622 53622 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MATCH UPN48_class_I_Rep_2 6 2 587.794275 1173.574 0.58298 0.00034267 -0.36382 -0.00021385 0.21916 0.00012882 587.7943867829277 57.588 0.075657 61.102 61.076 61.151 3.5142 0.18148 0.00068441 NaN 8.1555 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 82270 46448 3435 29260 29274 -0.005847673228117856 TYMWNTRR 8 Unmodified _TYMWNTRR_ 0 0 0 L1MEf_dup8271|chr12:1296700-1297419:+|2.4086741709505195|0.0916784980686468|4.72|151.0|3|1|sense L1MEf_dup8271|chr12:1296700-1297419:+|2.4086741709505195|0.0916784980686468|4.72|151.0|3|1|sense L1MEf_dup8271|chr12:1296700-1297419:+|2.4086741709505195|0.0916784980686468|4.72|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 564.276123046875 2 564.274375 1126.5342 NaN NaN NaN NaN NaN NaN NaN 20.441 1 24.089 23.589 24.589 3.648 0 0 0 0.40746 1 1757 1757 0.69038 0 1 46449 13322 29261 29275 53623 53623 -0.024008494828422045 TYMWNTRR 8 Unmodified _TYMWNTRR_ 0 0 0 L1MEf_dup8271|chr12:1296700-1297419:+|2.4086741709505195|0.0916784980686468|4.72|151.0|3|1|sense L1MEf_dup8271|chr12:1296700-1297419:+|2.4086741709505195|0.0916784980686468|4.72|151.0|3|1|sense L1MEf_dup8271|chr12:1296700-1297419:+|2.4086741709505195|0.0916784980686468|4.72|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 564.2743530273438 2 564.274375 1126.5342 NaN NaN NaN NaN NaN NaN NaN 113.66 1 117.32 116.82 117.82 3.6568 0 0 0 0.40604 1 27033 27033 2.5775 0 1 46450 13322 29261 29275 53624 53624 -0.024008494828422045 TYNKLHQFK 9 Unmodified _TYNKLHQFK_ 0 0 0 L1ME1_dup480|chr1:43756151-43756482:+|1.068494137630593|0.0173536769180505|5.94|151.0|12|1|anti-sense L1ME1_dup480|chr1:43756151-43756482:+|1.068494137630593|0.0173536769180505|5.94|151.0|12|1|anti-sense L1ME1_dup480|chr1:43756151-43756482:+|1.068494137630593|0.0173536769180505|5.94|151.0|12|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 589.3184814453125 2 589.819473 1177.62439 0.44822 0.00026437 0.67935 0.00040069 1.1276 0.00066506 589.8198370254444 74.13 0.16608 77.62 77.543 77.709 3.49 37 15 3 0 0 0 0.10341 1 17487 17487 16.942 10.219 1 902200 46451 12410 29262 29276 53625 53625 0.042685231172072235 TYNKLHQFK 9 Unmodified _TYNKLHQFK_ 0 0 0 L1ME1_dup480|chr1:43756151-43756482:+|1.068494137630593|0.0173536769180505|5.94|151.0|12|1|anti-sense L1ME1_dup480|chr1:43756151-43756482:+|1.068494137630593|0.0173536769180505|5.94|151.0|12|1|anti-sense L1ME1_dup480|chr1:43756151-43756482:+|1.068494137630593|0.0173536769180505|5.94|151.0|12|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 589.3182983398438 2 589.819473 1177.62439 0.56014 0.00033038 0.62557 0.00036898 1.1857 0.00069936 589.8199013509773 74.138 0.13799 77.689 77.571 77.709 3.5505 30 16 2 0 0 0 0.11598 1 17359 17359 11.64 6.8843 1 214010 46452 12410 29262 29276 53626 53626 0.042685231172072235 TYNLYGQY 8 Unmodified _TYNLYGQY_ 0 0 0 L1PA3_dup10156|chr18:49215769-49223192:+|1.7542418894768046|0.1447850574881619|3.6|151.0|213|3|sense L1PA3_dup10156|chr18:49215769-49223192:+|1.7542418894768046|0.1447850574881619|3.6|151.0|213|3|sense L1PA3_dup10156|chr18:49215769-49223192:+|1.7542418894768046|0.1447850574881619|3.6|151.0|213|3|sense MSMS UPN48_class_I_Rep_1 5 511.2348327636719 2 511.234907 1020.45526 NaN NaN NaN NaN NaN NaN NaN 37.234 1 40.741 40.241 41.241 3.507 0 0 0 0.39624 1 6309 6309 9.3474 0 1 46453 14218 29263 29277 53627 53627 -0.05414798236131446 TYNPDEEEED 10 Unmodified _TYNPDEEEED_ 0 0 0 nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A nc|ENSG00000114302|P13861-2|PRKAR2A MSMS UPN47_class_I_Rep_1 2 620.7260131835938 2 620.728037 1239.44152 NaN NaN NaN NaN NaN NaN NaN 112.89 1 116.46 115.96 116.96 3.572 0 0 0 0.53105 1 27840 27840 1.3295 0.72803 1 46454 2072 29264 29278 53628 53628 -0.16862165316547362 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS UPN48_class_I_Rep_1 5 602.27685546875 2 602.277106 1202.53966 0.4726 0.00028463 0.21813 0.00013137 0.69073 0.00041601 602.2771943134583 55.154 0.80136 58.663 58.31 59.111 3.5082 95 51 2 0 0 0 0.043452 1 11713 11713 51.63 31.176 1 303480 46455 2022 29265 29279 53629 53629 -0.053508474193904476 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS UPN48_class_I_Rep_2 6 602.27783203125 2 602.277106 1202.53966 0.60775 0.00036604 0.072339 4.3568E-05 0.68009 0.0004096 602.2771090959454 55.084 0.76926 58.64 58.328 59.097 3.5559 82 44 2 0 0 0 0.052902 2 11668 11668;11797 47.749 27.295 1 319570 46456 2022 29265 29279 53630;53631 53630 -0.053508474193904476 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS UPN48_class_I_Rep_3 7 603.2998657226562 2 602.277106 1202.53966 0.41395 0.00024931 0.14514 8.7413E-05 0.55908 0.00033672 602.2771717783727 55.08 0.80331 58.65 58.24 59.043 3.5694 93 44 3 0 0 0 0.10817 2 11665 11622;11665 32.305 14.171 1 296940 46457 2022 29265 29279 53632;53633 53633 -0.053508474193904476 TYPDVNNSI 9 Unmodified _TYPDVNNSI_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS UPN48_class_I_Rep_1 5 511.7434997558594 2 511.743096 1021.47164 0.22669 0.00011601 -0.092802 -4.7491E-05 0.13389 6.8516E-05 511.74304800760825 47.238 0.43261 50.76 50.45 50.883 3.5219 39 25 2 0 0 0 0.14216 1 9309 9309 26.268 9.3258 1 88789 46458 2402 29266 29280 53634 53634 -0.03823717070042676 TYPDVNNSI 9 Unmodified _TYPDVNNSI_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS UPN48_class_I_Rep_2 6 511.74365234375 2 511.743096 1021.47164 0.22761 0.00011648 -0.23616 -0.00012086 -0.0085568 -4.3789E-06 511.74296694305474 46.919 0.34244 50.669 50.42 50.762 3.7494 35 21 2 0 0 0 0.12096 2 9203 9203;9207 29.841 12.898 1 84266 46459 2402 29266 29280 53635;53636 53635 -0.03823717070042676 TYPDVNNSI 9 Unmodified _TYPDVNNSI_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS UPN48_class_I_Rep_3 7 511.74310302734375 2 511.743096 1021.47164 0.22177 0.00011349 0.17986 9.2041E-05 0.40163 0.00020553 511.7431749212951 47.108 0.35733 50.744 50.532 50.889 3.6363 28 22 2 0 0 0 0.095207 1 9220 9220 34.932 17.99 1 123600 46460 2402 29266 29280 53637 53637 -0.03823717070042676 TYPNTQDYV 9 Unmodified _TYPNTQDYV_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS UPN47_class_I_Rep_1 2 550.74853515625 2 550.748379 1099.4822 NaN NaN NaN NaN NaN NaN NaN 34.472 1 38.158 37.658 38.658 3.6859 0 0 0 0.38299 1 6207 6207 4.756 0 1 + 46461 19922 29267 29281 53638 53638 -0.06355734415615188 TYPNTYIF 8 Unmodified _TYPNTYIF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_1 5 509.74755859375 2 509.74765 1017.48075 0.29503 0.00015039 -0.42241 -0.00021532 -0.12738 -6.4932E-05 509.74744037022816 67.398 0.7123 70.85 70.453 71.165 3.4516 76 49 2 0 0 0 0.82752 2 15453 15453;15492 54.774 18.729 1 191700 46462 1544 29268 29282 53639;53640 53639 -0.027293237137314463 TYPNTYIF 8 Unmodified _TYPNTYIF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_2 6 509.74786376953125 2 509.74765 1017.48075 0.3334 0.00016995 -0.05004 -2.5508E-05 0.28336 0.00014444 509.7476108063495 67.146 0.79251 70.642 70.31 71.102 3.4964 99 57 3 0 0 0 0.82752 2 15359 15359;15397 37.974 9.4872 1 168600 46463 1544 29268 29282 53641;53642 53641 -0.027293237137314463 TYPNTYIF 8 Unmodified _TYPNTYIF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS UPN48_class_I_Rep_3 7 509.74749755859375 2 509.74765 1017.48075 0.32802 0.00016721 -0.2204 -0.00011235 0.10761 5.4855E-05 509.74753806718354 67.112 0.71533 70.619 70.235 70.951 3.5077 97 53 2 0 0 0 0.82752 2 15263 15263;15308 32.305 9.1571 1 157030 46464 1544 29268 29282 53643;53644 53643 -0.027293237137314463 TYPQDHVFK 9 Unmodified _TYPQDHVFK_ 0 0 0 REV__LTR83_dup8|chr1:39343049-39343684:-|1.6082664335286352|0.0138937544097437|6.85|151.0|30|1|anti-sense REV__LTR83_dup8|chr1:39343049-39343684:-|1.6082664335286352|0.0138937544097437|6.85|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_3 7 567.7822875976562 2 567.782556 1133.55056 NaN NaN NaN NaN NaN NaN NaN 63.469 1 66.978 66.478 67.478 3.5091 0 0 0 0.38478 1 14192 14192 4.3292 0.38484 1 + 46465 31026 29269 29283 53645 53645 -0.01087445045095592 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS UPN48_class_I_Rep_1 5 602.7846069335938 2 602.785296 1203.55604 0.46711 0.00028157 -0.29978 -0.0001807 0.16733 0.00010086 602.7849153538335 68.617 0.47372 72.069 71.807 72.28 3.4517 62 40 2 0 0 0 0.068604 5 15837 15793;15832;15837;15896;15902 41.347 16.356 1 126670 46466 2074 29270 29284 53646;53647;53648;53649;53650 53648 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_2 6 602.7853393554688 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.23 1 71.738 71.238 72.238 3.5083 0 0 0 0.082627 1 15723 15723 28.234 12.085 1 46467 2074 29270 29284 53651 53651 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_2 6 602.7859497070312 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.365 1 71.873 71.373 72.373 3.5083 0 0 0 0.098956 1 15763 15763 24.882 4.467 1 46468 2074 29270 29284 53652 53652 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_2 6 602.7850952148438 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.492 1 72 71.5 72.5 3.5083 0 0 0 0.098956 1 15800 15800 24.882 9.6331 1 46469 2074 29270 29284 53653 53653 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_3 7 602.7838745117188 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.155 1 71.664 71.164 72.164 3.5094 0 0 0 0.082627 1 15610 15610 28.234 12.085 1 46470 2074 29270 29284 53654 53654 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_3 7 602.7860107421875 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.186 1 71.695 71.195 72.195 3.5094 0 0 0 0.29913 1 15619 15619 10.8 4.5937 1 46471 2074 29270 29284 53655 53655 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_3 7 602.7859497070312 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.209 1 71.718 71.218 72.218 3.5094 0 0 0 0.11743 1 15626 15626 21.59 8.5477 1 46472 2074 29270 29284 53656 53656 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_3 7 602.7859497070312 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.336 1 71.845 71.345 72.345 3.5094 0 0 0 0.16861 1 15664 15664 18.373 8.2992 1 46473 2074 29270 29284 53657 53657 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_3 7 602.78564453125 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.476 1 71.985 71.485 72.485 3.5094 0 0 0 0.056126 1 15702 15702 35.08 15.718 1 46474 2074 29270 29284 53658 53658 -0.037597662533016774 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS UPN48_class_I_Rep_3 7 602.7855834960938 2 602.785296 1203.55604 NaN NaN NaN NaN NaN NaN NaN 68.485 1 71.995 71.495 72.495 3.5094 0 0 0 0.082627 1 15705 15705 28.234 12.085 1 46475 2074 29270 29284 53659 53659 -0.037597662533016774 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS UPN48_class_I_Rep_1 5 548.2703247070312 2 548.269478 1094.5244 0.45743 0.00025079 0.61951 0.00033966 1.0769 0.00059045 548.2699363649792 49.74 0.85191 53.265 52.921 53.773 3.5246 124 52 3 0 0 0 0.0052635 6 10118 10012;10024;10039;10078;10118;10157 84.522 34.968 1 550590 46476 4910 29271 29285 53660;53661;53662;53663;53664;53665 53664 -0.019077590072356543 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS UPN48_class_I_Rep_2 6 548.2703857421875 2 548.269478 1094.5244 0.43295 0.00023737 0.8714 0.00047776 1.3044 0.00071514 548.2699717075345 49.56 0.82871 53.254 52.927 53.756 3.6946 113 53 3 0 0 0 0.0052635 6 10047 9955;9960;10003;10047;10091;10102 81.915 39.188 1 548800 46477 4910 29271 29285 53666;53667;53668;53669;53670;53671 53669 -0.019077590072356543 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS UPN48_class_I_Rep_3 7 548.270751953125 2 548.269478 1094.5244 0.33864 0.00018566 0.89428 0.00049031 1.2329 0.00067597 548.2700410785029 49.664 0.66892 53.29 53.042 53.711 3.6261 110 44 3 0 0 0 0.0047467 6 9979 9930;9936;9941;9979;10020;10064 97.741 36.139 1 567710 46478 4910 29271 29285 53672;53673;53674;53675;53676;53677 53675 -0.019077590072356543 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MULTI-MSMS UPN48_class_I_Rep_1 5 557.2824096679688 2 557.282389 1112.55022 0.4861 0.0002709 -0.11149 -6.2129E-05 0.37462 0.00020877 557.2824042243473 42.614 0.59118 46.122 45.893 46.485 3.5079 70 45 2 0 0 0 0.36392 1 7943 7943 10.074 2.7847 1 126120 46479 605 29272 29286 53678 53678 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_1 5 557.2841796875 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 38.979 1 42.484 41.984 42.984 3.5048 0 0 0 0.18341 1 6824 6824 17.443 3.5366 1 46480 605 29272 29286 53679 53679 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_1 5 557.2816772460938 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 39.134 1 42.639 42.139 43.139 3.5048 0 0 0 0.23173 1 6872 6872 14.405 4.3315 1 46481 605 29272 29286 53680 53680 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MULTI-MSMS UPN48_class_I_Rep_2 6 557.2833251953125 2 557.282389 1112.55022 0.45439 0.00025322 -0.31889 -0.00017771 0.1355 7.5512E-05 557.2821484434455 38.68 0.39896 42.41 42.288 42.687 3.7297 57 39 2 0 0 0 0.10956 2 6785 6785;6799 32.037 16.789 1 124640 46482 605 29272 29286 53681;53682 53681 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_3 7 556.969482421875 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 38.704 1 42.364 41.864 42.864 3.6595 0 0 0 0.35904 1 6683 6683 7.609 3.0801 1 46483 605 29272 29286 53683 53683 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_3 7 557.2811279296875 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 38.781 1 42.44 41.94 42.94 3.6595 0 0 0 0.10427 1 6704 6704 23.79 8.9515 1 46484 605 29272 29286 53684 53684 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_3 7 557.2830200195312 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 38.797 1 42.454 41.954 42.954 3.6573 0 0 0 0.056669 1 6709 6709 34.932 15.57 1 46485 605 29272 29286 53685 53685 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_3 7 557.2817993164062 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 38.992 1 42.648 42.148 43.148 3.6557 0 0 0 0.3377 1 6766 6766 8.7454 2.5396 1 46486 605 29272 29286 53686 53686 -0.001548647649542545 TYQEVAQKF 9 Unmodified _TYQEVAQKF_ 0 0 0 nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2;chr22:17209723-17221727|140|12.41|0.63|4.3|-|ENST00000649746|ADA2,ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 nc|ENSG00000093072|Q9NZK5-2|ADA2 MSMS UPN48_class_I_Rep_3 7 557.2813720703125 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 39.08 1 42.735 42.235 43.235 3.6557 0 0 0 0.27207 1 6791 6791 12.241 4.0851 1 46487 605 29272 29286 53687 53687 -0.001548647649542545 TYQKCHCL 8 Unmodified _TYQKCHCL_ 0 0 0 ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron;ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|1|intron ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 498.2257080078125 2 498.225505 994.436457 0.21317 0.00010621 -0.014055 -7.0027E-06 0.19912 9.9206E-05 498.2254169012751 53.724 0.58201 57.238 57.002 57.584 3.5143 64 41 2 0 0 0 0.82752 1 11280 11280 4.756 0.81161 1 102340 46488 4443 29273 29287 53688 53688 -0.060983744032000686 TYQKCHCL 8 Unmodified _TYQKCHCL_ 0 0 0 ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron;ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|1|intron ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron MULTI-MSMS UPN48_class_I_Rep_3 7 498.2254638671875 2 498.225505 994.436457 0.10813 5.3872E-05 0.19088 9.5101E-05 0.29901 0.00014897 498.2255515814853 53.673 0.50563 57.256 57.005 57.51 3.5836 54 39 2 0 0 0 0.82752 1 11181 11181 4.756 4.756 1 116510 46489 4443 29273 29287 53689 53689 -0.060983744032000686 TYQKCHCL 8 Unmodified _TYQKCHCL_ 0 0 0 ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron;ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|1|intron ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron ENSG00000169895.6,SYAP1,chrX,+,I6.1,16755094,16756662|47|8.66|2|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 498.225505 994.436457 0.10813 5.3872E-05 0.19088 9.5101E-05 0.29901 0.00014897 498.2255515814853 53.673 0.50563 57.256 57.005 57.51 3.5836 -0.03564 0.0002265 NaN 4.756 54 39 2 NaN NaN NaN NaN 0 NaN NaN 0 116510 46490 4443 29273 29287 -0.060983744032000686 TYQNNDAGARM 11 Unmodified _TYQNNDAGARM_ 0 0 0 nc|ENSG00000170854|Q8IUF8-2|RIOX2 nc|ENSG00000170854|Q8IUF8-2|RIOX2 nc|ENSG00000170854|Q8IUF8-2|RIOX2 MSMS UPN47_class_I_Rep_1 2 620.7750854492188 2 620.772394 1239.53023 NaN NaN NaN NaN NaN NaN NaN 59.258 1 62.675 62.175 63.175 3.4171 0 0 0 0.38417 1 13746 13746 2.2828 0.22302 1 46491 16749 29274 29288 53690 53690 -0.07994983767230224 TYQRLYYQ 8 Unmodified _TYQRLYYQ_ 0 0 0 REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF MSMS UPN48_class_I_Rep_1 5 567.7808837890625 2 567.782556 1133.55056 NaN NaN NaN NaN NaN NaN NaN 64.208 1 67.666 67.166 68.166 3.4578 0 0 0 0.4044 1 14517 14517 4.756 1.1595 1 + 46492 22270 29275 29289 53691 53691 -0.01087445045095592 TYQVCRHAPR 10 Unmodified _TYQVCRHAPR_ 0 0 0 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant;nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2;ENST00000554284.1_1_14:52495365-52507549:-|nuORF NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 615.8140869140625 2 615.811656 1229.60876 0.50557 0.00031134 -0.16951 -0.00010439 0.33606 0.00020695 615.8115992791977 67.314 0.94589 70.811 70.409 71.354 3.4964 187 74 3 0 0 0 0.54822 1 15593 15593 5.7319 1.7875 1 1019000 46493 1298 29276 29290 53692 53692 0.0031391332850034814 TYQVLAVTF 9 Unmodified _TYQVLAVTF_ 0 0 0 ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40 ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENST00000474025.1_1_1:31744094-31762265:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 521.2844848632812 2 521.2844 1040.55425 0.30538 0.00015919 -0.20273 -0.00010568 0.10266 5.3514E-05 521.2842389001355 77.918 0.86065 81.441 81.111 81.971 3.5221 158 93 3 0 0 0 0.0065234 2 18622 18578;18622 110.67 3.8677 1 911380 46494 968 29277 29291 53693;53694 53694 0.035592247287468126 TYQVLAVTF 9 Unmodified _TYQVLAVTF_ 0 0 0 ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40 ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENST00000474025.1_1_1:31744094-31762265:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 521.2844 1040.55425 0.36833 0.00019201 -0.24289 -0.00012662 0.12544 6.5389E-05 521.28420400203 77.837 1.3053 81.46 81.029 82.334 3.6222 -0.024586 1.778E-05 NaN 110.67 372 143 4 NaN NaN NaN NaN 0 NaN NaN 0 2700100 46495 968 29277 29291 0.035592247287468126 TYQVLAVTF 9 Unmodified _TYQVLAVTF_ 0 0 0 ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40 ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENST00000474025.1_1_1:31744094-31762265:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 521.2844 1040.55425 0.44128 0.00023003 -0.28573 -0.00014895 0.15554 8.1082E-05 521.2841867750391 77.931 1.2472 81.552 81.05 82.298 3.6216 0.06819 -2.6886E-05 NaN 110.67 383 139 4 NaN NaN NaN NaN 0 NaN NaN 0 2175100 46496 968 29277 29291 0.035592247287468126 TYRCIWMFL 9 Unmodified _TYRCIWMFL_ 0 0 0 ENST00000441290.6_1_7:114271612-114296599:+|nuORF ENST00000441290.6_1_7:114271612-114296599:+|nuORF ENST00000441290.6_1_7:114271612-114296599:+|nuORF MSMS UPN48_class_I_Rep_1 5 616.8009033203125 2 616.80138 1231.58821 NaN NaN NaN NaN NaN NaN NaN 59.779 1 63.259 62.759 63.759 3.4801 0 0 0 0.36505 1 13165 13165 7.2892 1.5574 1 46497 6778 29278 29292 53695 53695 -0.018323933754800237 TYREQPWH 8 Unmodified _TYREQPWH_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MSMS UPN48_class_I_Rep_3 7 558.7647094726562 2 558.764697 1115.51484 NaN NaN NaN NaN NaN NaN NaN 32.354 1 36.043 35.543 36.543 3.6896 0 0 0 0.40625 1 4906 4906 2.3027 0 1 46498 2135 29279 29293 53696 53696 -0.03829482502078463 TYRGYLAPY 9 Unmodified _TYRGYLAPY_ 0 0 0 REV__L1ME3A_dup12699|chr15:55337650-55338185:+|1.4776127284360114|0.2787246601031863|2.41|151.0|21|3|sense REV__L1ME3A_dup12699|chr15:55337650-55338185:+|1.4776127284360114|0.2787246601031863|2.41|151.0|21|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.280517578125 2 552.279649 1102.54475 0.63006 0.00034797 -0.40723 -0.0002249 0.22283 0.00012307 552.27957472635 58.914 0.79 62.4 62.004 62.794 3.487 87 49 2 0 0 0 0.20276 1 12865 12865 20.454 2.3073 1 226900 + 46499 27990 29280 29294 53697 53697 -0.0024254355676021078 TYRHHRKT 8 Unmodified _TYRHHRKT_ 0 0 0 REV__L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|55|3|sense REV__L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|55|3|sense MSMS UPN47_class_I_Rep_2 3 549.8015747070312 2 549.799406 1097.58426 NaN NaN NaN NaN NaN NaN NaN 37.763 1 41.151 40.651 41.651 3.3879 0 0 0 0.40625 1 7237 7237 2.3027 0 1 + 46500 30555 29281 29295 53698 53698 0.039370212373114555 TYRIRVER 8 Unmodified _TYRIRVER_ 0 0 0 Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|37|3|sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|37|3|sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|37|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 546.8175048828125 2 546.817264 1091.61998 -0.21794 -0.00011918 0.42842 0.00023427 0.21048 0.00011509 546.817380919995 12.864 0.3026 12.864 12.777 13.079 0 48 26 2 0 0 0 0.82752 1 251 251 3.9444 0 1 110720 46501 33381 29282 29296 53699 53699 0.07783058694326428 TYRKGFKIK 9 Unmodified _TYRKGFKIK_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-2|LARS1 REV__nc|ENSG00000133706|Q9P2J5-2|LARS1 MSMS UPN46_class_I_Rep_3 1 570.84814453125 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 44.01 1 44.01 43.51 44.51 0 0 0 0 0.38916 1 8833 8833 3.2813 1.6287 1 + 46502 19066 29283 29297 53700 53700 0.11725990393620123 TYRKKGLVRS 10 Unmodified _TYRKKGLVRS_ 0 0 0 HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|289|1|anti-sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|289|1|anti-sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|289|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 604.3670043945312 2 604.367121 1206.71969 0.63456 0.00038351 -0.74978 -0.00045315 -0.11522 -6.9636E-05 604.366494422173 98.059 0.075302 101.54 101.48 101.56 3.4836 10 9 2 0 0 0 0.56493 1 24052 24052 0.35063 0 1 130910 46503 8029 29284 29298 53701 53701 0.12459876308275852 TYRMEPPVQI 10 Unmodified _TYRMEPPVQI_ 0 0 0 REV__ENST00000481564.1_1_7:23338971-23340720:+|nuORF REV__ENST00000481564.1_1_7:23338971-23340720:+|nuORF MSMS UPN48_class_I_Rep_3 7 617.3180541992188 2 617.318448 1232.62234 NaN NaN NaN NaN NaN NaN NaN 56.341 1 59.883 59.383 60.383 3.5427 0 0 0 0.53105 1 12025 12025 8.1555 0.8663 1 + 46504 19811 29285 29299 53702 53702 0.01533726317120454 TYRMFSLTC 9 Unmodified _TYRMFSLTC_ 0 0 0 L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|32|2|sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|32|2|sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|32|2|sense MSMS UPN47_class_I_Rep_2 3 561.2600708007812 2 561.259545 1120.50454 NaN NaN NaN NaN NaN NaN NaN 73.557 1 76.862 76.362 77.362 3.3048 0 0 0 0.37692 1 18093 18093 6.2058 0.47393 1 46505 9688 29286 29300 53703 53703 -0.05089549543185967 TYRMGKKF 8 Unmodified _TYRMGKKF_ 0 0 0 L1PA7_dup4133|chr5:38988578-38990492:+|3.1527661537426783|0.1986416476720029|3.99|151.0|51|3|sense;L1PA5_dup7720|chr10:45413041-45415587:+|1.2437035080795062|0.1925483823378521|2.69|151.0|20|1|sense;L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|169|3|sense;L1PA4_dup6140|chr8:99050039-99053115:-|2.062847452175953|0.0169964943365538|6.92|151.0|32|1|sense L1PA7_dup4133|chr5:38988578-38990492:+|3.1527661537426783|0.1986416476720029|3.99|151.0|51|3|sense L1PA7_dup4133|chr5:38988578-38990492:+|3.1527661537426783|0.1986416476720029|3.99|151.0|51|3|sense MSMS UPN46_class_I_Rep_3 1 515.7779541015625 2 515.778762 1029.54297 NaN NaN NaN NaN NaN NaN NaN 49.299 1 49.299 48.799 49.799 0 0 0 0 0.40364 1 10340 10340 5.7604 1.0044 1 46506 14373 29287 29301 53704 53704 0.02938124153638455 TYRMRFRV 8 Unmodified _TYRMRFRV_ 0 0 0 REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|101|3|sense REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|101|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 564.8092041015625 2 564.808385 1127.60222 0.48329 0.00027297 -0.73315 -0.00041409 -0.24986 -0.00014112 564.8078624467407 74.034 0.40181 77.612 77.357 77.759 3.5779 82 44 3 0 0 0 0.82752 2 17435 17428;17435 5.2307 5.2307 1 212350 + 46507 23861 29288 29302 53705;53706 53706 0.04352020167812043 TYRMRFRV 8 Unmodified _TYRMRFRV_ 0 0 0 REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|101|3|sense REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|101|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 564.80810546875 2 564.808385 1127.60222 0.48329 0.00027297 -0.73315 -0.00041409 -0.24986 -0.00014112 564.8078624467407 74.034 0.40181 77.612 77.357 77.759 3.5779 82 44 3 0 0 0 0.72333 1 17390 17390 9.3474 9.3474 1 212350 + 46508 23861 29288 29302 53707 53707 0.04352020167812043 TYRMRFRV 8 Unmodified _TYRMRFRV_ 0 0 0 REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|101|3|sense REV__HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|101|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 564.808385 1127.60222 0.46627 0.00026336 -0.67903 -0.00038352 -0.21275 -0.00012016 564.8079354662634 74.147 0.10911 77.637 77.564 77.673 3.49 0.012752 5.6053E-05 NaN 5.2307 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 82584 + 46509 23861 29288 29302 0.04352020167812043 TYRNKYMTM 9 Unmodified _TYRNKYMTM_ 0 0 0 L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|14|1|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|14|1|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|14|1|sense MSMS UPN47_class_I_Rep_1 2 604.2864379882812 2 604.283551 1206.55255 NaN NaN NaN NaN NaN NaN NaN 98.017 1 101.8 101.3 102.3 3.7861 0 0 0 0.39598 1 24271 24271 1.6526 0.32309 1 46510 11603 29289 29303 53708 53708 -0.04246475623176593 TYRNKYMTM 9 Unmodified _TYRNKYMTM_ 0 0 0 L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|14|1|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|14|1|sense L1MC4a_dup7350|chr12:89681738-89683225:+|1.266265834739058|0.0127114844084345|6.64|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 604.2864990234375 2 604.283551 1206.55255 NaN NaN NaN NaN NaN NaN NaN 98.152 1 101.76 101.26 102.26 3.6065 0 0 0 0.39598 1 23681 23681 1.6526 0.32309 1 46511 11603 29289 29303 53709 53709 -0.04246475623176593 TYRRTKIR 8 Unmodified _TYRRTKIR_ 0 0 0 L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|46|2|sense;L1MEc_dup2383|chr2:89575914-89577159:-|1.263039850367669|0.1474267064561223|3.1|151.0|46|3|sense L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|46|2|sense L1MEc_dup8709|chr7:152297138-152299037:+|4.085252144519278|0.0817979332580426|5.64|151.0|46|2|sense MSMS UPN48_class_I_Rep_2 6 547.3165283203125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 70.009 1 73.54 73.04 74.04 3.5306 0 0 0 0.40746 1 16258 16258 0.69038 0 1 46512 13081 29290 29304 53710 53710 0.10899051448268438 TYRRYINW 8 Unmodified _TYRRYINW_ 0 0 0 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 MSMS UPN48_class_I_Rep_3 7 586.18994140625 2 586.30399 1170.59343 NaN NaN NaN NaN NaN NaN NaN 28.237 1 31.979 31.479 32.479 3.7424 0 0 0 0.40643 1 3814 3814 2.0598 0 1 + 46513 17669 29291 29305 53711 53711 0.014953698030012674 TYSECEDGTY 10 Unmodified _TYSECEDGTY_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MSMS UPN48_class_I_Rep_1 5 584.2088012695312 2 584.210969 1166.40738 NaN NaN NaN NaN NaN NaN NaN 119.99 1 123.61 123.11 124.11 3.6189 0 0 0 0.53105 1 29298 29298 0.40072 0 1 46514 3731 29292 29306 53712 53712 -0.16916285009142484 TYSFTIPLI 9 Unmodified _TYSFTIPLI_ 0 0 0 REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|307|2|anti-sense REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|307|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.7949829101562 2 527.794601 1053.57465 0.31714 0.00016739 0.10555 5.5711E-05 0.4227 0.0002231 527.7946029647228 86.946 0.19844 90.559 90.428 90.626 3.613 34 26 2 0 0 0 0.25207 1 20806 20806 16.942 0 1 125160 + 46515 29966 29293 29307 53713 53713 0.05000395388583456 TYSFTIPLI 9 Unmodified _TYSFTIPLI_ 0 0 0 REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|307|2|anti-sense REV__L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|307|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 527.7946166992188 2 527.794601 1053.57465 0.48691 0.00025699 -0.242 -0.00012773 0.24491 0.00012926 527.794525868102 86.879 0.31607 90.669 90.571 90.887 3.7905 62 45 2 0 0 0 0.33654 2 20599 20599;20635 11.64 0 1 125350 + 46516 29966 29293 29307 53714;53715 53714 0.05000395388583456 TYSIRLQFN 9 Unmodified _TYSIRLQFN_ 0 0 0 REV__L1P2_dup1349|chr14:30663955-30669057:+|4.4451201644472205|0.4642598085667838|3.26|151.0|9|1|sense REV__L1P2_dup1349|chr14:30663955-30669057:+|4.4451201644472205|0.4642598085667838|3.26|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 571.3212890625 2 571.303655 1140.59276 NaN NaN NaN NaN NaN NaN NaN 70.861 1 74.397 73.897 74.897 3.5359 0 0 0 0.3824 1 16503 16503 4.897 0 1 + 46517 28840 29294 29308 53716 53716 0.028085303632678915 TYSKPLNY 8 Unmodified _TYSKPLNY_ 0 0 0 L1PA5_dup2779|chr4:71012179-71017935:+|1.2668742847391803|0.0427819807789749|4.89|151.0|138|3|sense L1PA5_dup2779|chr4:71012179-71017935:+|1.2668742847391803|0.0427819807789749|4.89|151.0|138|3|sense L1PA5_dup2779|chr4:71012179-71017935:+|1.2668742847391803|0.0427819807789749|4.89|151.0|138|3|sense MSMS UPN48_class_I_Rep_1 5 493.25323486328125 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 62.546 1 66.008 65.508 66.508 3.4625 0 0 0 0.40643 1 14007 14007 2.0598 0 1 46518 14455 29295 29309 53717 53717 -0.0012192133942789951 TYSLLSHRD 9 Unmodified _TYSLLSHRD_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MSMS UPN47_class_I_Rep_1 2 546.2786254882812 2 546.277638 1090.54072 NaN NaN NaN NaN NaN NaN NaN 31.365 1 35.095 34.595 35.595 3.7293 0 0 0 0.3967 1 5253 5253 1.4819 0.68827 1 46519 4915 29296 29310 53718 53718 -0.0009263305046260939 TYSLVWVMAAV 11 Unmodified _TYSLVWVMAAV_ 0 0 0 ENSG00000091972|ENST00000315711|CD200;nc|ENSG00000091972|P41217|CD200;nc|ENSG00000091972|P41217-3|CD200 ENSG00000091972|ENST00000315711|CD200 ENSG00000091972|ENST00000315711|CD200 MSMS UPN48_class_I_Rep_1 5 620.3274536132812 2 620.325742 1238.63693 NaN NaN NaN NaN NaN NaN NaN 54.219 1 57.733 57.233 58.233 3.5143 0 0 0 0.34415 1 11458 11458 9.3831 1.473 1 46520 1381 29297 29311 53719 53719 0.027157984652603773 TYSLVWVMAAV 11 Unmodified _TYSLVWVMAAV_ 0 0 0 ENSG00000091972|ENST00000315711|CD200;nc|ENSG00000091972|P41217|CD200;nc|ENSG00000091972|P41217-3|CD200 ENSG00000091972|ENST00000315711|CD200 ENSG00000091972|ENST00000315711|CD200 MSMS UPN48_class_I_Rep_1 5 620.3272094726562 2 620.325742 1238.63693 NaN NaN NaN NaN NaN NaN NaN 54.35 1 57.865 57.365 58.365 3.5143 0 0 0 0.34415 1 11499 11499 9.3831 1.473 1 46521 1381 29297 29311 53720 53720 0.027157984652603773 TYSNSAFQYF 10 Unmodified _TYSNSAFQYF_ 0 0 0 nc|ENSG00000211794|A0A0B4J271|TRAV12-3 nc|ENSG00000211794|A0A0B4J271|TRAV12-3 nc|ENSG00000211794|A0A0B4J271|TRAV12-3 MULTI-SECPEP UPN48_class_I_Rep_3 7 614.3582763671875 2 614.269478 1226.5244 0.63229 0.0003884 -0.30856 -0.00018954 0.32373 0.00019886 614.2693843057837 68.609 0.36831 72.119 71.995 72.363 3.5094 30 24 2 0 0 0 0.84575 1 15724 15724 5.2969 0.96765 1 71441 46522 16817 29298 29312 53721 53721 -0.07979759007230314 TYSYSHTVSM 10 Unmodified _TYSYSHTVSM_ 0 0 0 REV__MER11C_dup429|chr8:8133613-8134678:+|1.8804921869433255|0.1232958185896247|3.93|151.0|9|1|sense REV__MER11C_dup429|chr8:8133613-8134678:+|1.8804921869433255|0.1232958185896247|3.93|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 588.2549438476562 2 588.255514 1174.49647 0.38723 0.00022779 0.29507 0.00017358 0.6823 0.00040137 588.2554736405467 62.657 0.50213 66.017 65.828 66.33 3.3595 39 32 2 0 0 0 0.56033 1 14814 14814 3.5965 3.5965 1 96192 + 46523 31103 29299 29313 53722 53722 -0.08379405258983752 TYTDLFKEM 9 Unmodified _TYTDLFKEM_ 0 0 0 REV__L1PA8_dup4862|chrX:75307836-75311156:-|1.463389533687761|0.1063279983357985|3.78|151.0|40|2|sense REV__L1PA8_dup4862|chrX:75307836-75311156:-|1.463389533687761|0.1063279983357985|3.78|151.0|40|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.2689208984375 2 574.270632 1146.52671 0.55878 0.00032089 -1.9567 -0.0011237 -1.3979 -0.00080279 574.2687666224151 61.734 0.9295 65.202 64.864 65.793 3.4678 163 84 3 0 0 0 0.44742 1 13707 13707 5.2969 0 1 448730 + 46524 29582 29300 29314 53723 53723 -0.040690465937814224 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS UPN48_class_I_Rep_1 5 581.3010864257812 2 581.300581 1160.58661 0.45429 0.00026408 -0.60252 -0.00035025 -0.14823 -8.6167E-05 581.3004212424236 69.221 0.77782 72.676 72.275 73.053 3.4548 70 58 2 0 0 0 0.053261 4 16036 15991;16036;16093;16133 47.594 23.574 1 239100 46525 5320 29301 29315 53724;53725;53726;53727 53725 0.012740121317847297 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS UPN48_class_I_Rep_2 6 581.3009643554688 2 581.300581 1160.58661 0.48209 0.00028024 -0.57793 -0.00033595 -0.095839 -5.5712E-05 581.300355681602 68.93 0.94418 72.441 72.085 73.029 3.5104 94 71 2 0 0 0 0.048662 4 15903 15903;15967;16020;16066 49.554 18.918 1 244980 46526 5320 29301 29315 53728;53729;53730;53731 53728 0.012740121317847297 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS UPN48_class_I_Rep_3 7 581.3006591796875 2 581.300581 1160.58661 0.55117 0.0003204 -0.57702 -0.00033542 -0.025845 -1.5024E-05 581.3002411828132 68.845 0.84589 72.355 72.058 72.904 3.5094 81 61 2 0 0 0 0.066364 5 15832 15782;15832;15875;15897;15974 41.956 17.935 1 305330 46527 5320 29301 29315 53732;53733;53734;53735;53736 53733 0.012740121317847297 TYTDVTPRQF 10 Unmodified _TYTDVTPRQF_ 0 0 0 ENST00000462501.1_1_2:96858901-96861247:-|nuORF;ENSG00000084090|ENST00000337288|STARD7 ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENST00000462501.1_1_2:96858901-96861247:-|nuORF MSMS UPN48_class_I_Rep_1 5 614.3050537109375 2 614.303852 1226.59315 NaN NaN NaN NaN NaN NaN NaN 44.086 1 47.599 47.099 48.099 3.5132 0 0 0 0.53105 1 8350 8350 1.3295 0 1 46528 1250 29302 29316 53737 53737 -0.011080947075242875 TYTERPPLL 9 Unmodified _TYTERPPLL_ 0 0 0 MER102c_dup3198|chr20:48639072-48639398:-|1.289378034980998|0.3259114316032698|1.98|151.0|17|3|anti-sense MER102c_dup3198|chr20:48639072-48639398:-|1.289378034980998|0.3259114316032698|1.98|151.0|17|3|anti-sense MER102c_dup3198|chr20:48639072-48639398:-|1.289378034980998|0.3259114316032698|1.98|151.0|17|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 545.802734375 2 545.300581 1088.58661 0.3681 0.00020072 0.36251 0.00019768 0.73061 0.0003984 545.8024781372914 68.95 0.29106 72.22 72.066 72.357 3.2696 32 23 2 0 0 0 0.43153 1 16733 16733 6.2058 0.97511 1 94494 46529 15761 29303 29317 53738 53738 0.0458601213174461 TYTFLKETF 9 Unmodified _TYTFLKETF_ 0 0 0 ENST00000470191.5_1_9:15845666-15971831:+|nuORF;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171 ENST00000470191.5_1_9:15845666-15971831:+|nuORF ENST00000470191.5_1_9:15845666-15971831:+|nuORF MSMS UPN48_class_I_Rep_1 5 575.2949829101562 2 575.294965 1148.57538 NaN NaN NaN NaN NaN NaN NaN 61.465 1 64.932 64.432 65.432 3.4678 0 0 0 0.23173 1 13676 13676 14.405 5.8121 1 46530 4148 29304 29318 53739 53739 0.007031900375977784 TYTGEYFAV 9 Unmodified _TYTGEYFAV_ 0 0 0 REV__L1ME1_dup27050|chr16:80993825-80994863:+|1.1938378184967433|0.0550186623952886|4.44|151.0|21|2|sense REV__L1ME1_dup27050|chr16:80993825-80994863:+|1.1938378184967433|0.0550186623952886|4.44|151.0|21|2|sense MSMS UPN47_class_I_Rep_1 2 525.744140625 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 36.182 1 39.859 39.359 40.359 3.6762 0 0 0 0.38299 1 6724 6724 4.756 0.42677 1 + 46531 27714 29305 29319 53740 53740 -0.05217931438960477 TYTILLFFF 9 Unmodified _TYTILLFFF_ 0 0 0 L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|202|2|anti-sense L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|202|2|anti-sense L1MA1_dup247|chr1:213146725-213150295:-|2.0373399131866825|0.0257899346416965|6.3|150.0|202|2|anti-sense MSMS UPN48_class_I_Rep_3 7 582.8240966796875 2 582.820618 1163.62668 NaN NaN NaN NaN NaN NaN NaN 36.051 1 39.717 39.217 40.217 3.6667 0 0 0 0.39428 1 5919 5919 2.0598 0.40713 1 46532 9289 29306 29320 53741 53741 0.05141558802324653 TYTLRTDPF 9 Unmodified _TYTLRTDPF_ 0 0 0 REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|57|1|sense REV__L1PB1_dup11175|chr14:94065491-94071367:+|2.7443991370544123|0.1190937796311635|4.53|151.0|57|1|sense MSMS UPN48_class_I_Rep_1 5 557.2826538085938 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 38.903 1 42.408 41.908 42.908 3.5048 0 0 0 0.37891 1 6801 6801 5.7319 0.43497 1 + 46533 30313 29307 29321 53742 53742 -0.0015486476497699186 TYTNQFLHPL 10 Unmodified _TYTNQFLHPL_ 0 0 0 REV__HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|122|3|anti-sense REV__HAL1_dup15738|chr11:76045316-76046975:+|4.869680833039469|0.1117946552869436|5.44|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_3 7 617.3178100585938 2 617.316763 1232.61897 NaN NaN NaN NaN NaN NaN NaN 56.487 1 60.03 59.53 60.53 3.5427 0 0 0 0.53105 1 12070 12070 8.7454 1.1365 1 + 46534 23362 29308 29322 53743 53743 0.011967995347504257 TYTQTYTLF 9 Unmodified _TYTQTYTLF_ 0 0 0 REV__L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|48|3|sense REV__L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|48|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 569.2762451171875 2 569.276772 1136.53899 0.47445 0.00027009 0.33609 0.00019133 0.81054 0.00046142 569.2767317588406 56.039 0.14325 59.54 59.412 59.555 3.5014 20 12 2 0 0 0 0.32682 1 11999 11999 12.241 2.8575 1 72149 + 46535 26965 29309 29323 53744 53744 -0.023816868590984086 TYTSLRKA 8 Unmodified _TYTSLRKA_ 0 0 0 REV__L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|91|3|sense REV__L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|91|3|sense MSMS UPN47_class_I_Rep_3 4 470.2659912109375 2 470.266542 938.51853 NaN NaN NaN NaN NaN NaN NaN 24.15 1 27.501 27.001 28.001 3.3509 0 0 0 0.40746 1 3193 3193 0.69038 0 1 + 46536 27496 29310 29324 53745 53745 0.046811872717512415 TYTSNLVRL 9 Unmodified _TYTSNLVRL_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS UPN48_class_I_Rep_1 5 533.7987060546875 2 533.798206 1065.58186 0.33679 0.00017978 0.78988 0.00042164 1.1267 0.00060142 533.7983653644498 50.008 0.46697 53.532 53.306 53.773 3.5246 39 28 2 0 0 0 0.11355 1 10192 10192 31.268 13.122 1 152700 46537 2164 29311 29325 53746 53746 0.051691279890064834 TYTSNLVRL 9 Unmodified _TYTSNLVRL_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MSMS UPN48_class_I_Rep_2 6 533.7981567382812 2 533.798206 1065.58186 NaN NaN NaN NaN NaN NaN NaN 49.868 1 53.563 53.063 54.063 3.6946 0 0 0 0.064572 1 10122 10122 32.786 8.7651 1 46538 2164 29311 29325 53747 53747 0.051691279890064834 TYTSNLVRL 9 Unmodified _TYTSNLVRL_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MATCH UPN48_class_I_Rep_3 7 2 533.798206 1065.58186 0.4251 0.00022692 0.31566 0.0001685 0.74077 0.00039542 533.798438491209 49.993 0.44261 53.614 53.358 53.8 3.621 0.040972 -0.0001682 NaN 31.268 41 27 2 NaN NaN NaN NaN 0 NaN NaN 0 89960 46539 2164 29311 29325 0.051691279890064834 TYTTDYKGTL 10 Unmodified _TYTTDYKGTL_ 0 0 0 nc|ENSG00000143155|O75663-2|TIPRL;ENSG00000143155|ENST00000367833|TIPRL nc|ENSG00000143155|O75663-2|TIPRL nc|ENSG00000143155|O75663-2|TIPRL MULTI-MSMS UPN48_class_I_Rep_3 7 582.3010864257812 2 581.784961 1161.55537 0.47797 0.00027808 1.4363 0.00083562 1.9143 0.0011137 581.7858113929337 60.402 0.42812 63.919 63.548 63.976 3.5169 62 36 2 0 0 0 0.56118 1 13228 13228 2.9952 1.151 1 105320 46540 3276 29312 29326 53748 53748 -0.01894605692996265 TYVDPNHFKL 10 Unmodified _TYVDPNHFKL_ 0 0 0 REV__nc|ENSG00000141527|Q9BXL6-2|CARD14 REV__nc|ENSG00000141527|Q9BXL6-2|CARD14 MSMS UPN48_class_I_Rep_3 7 616.9669189453125 2 617.316763 1232.61897 NaN NaN NaN NaN NaN NaN NaN 56.54 1 60.083 59.583 60.583 3.5427 0 0 0 0.53105 1 12086 12086 2.4985 0 1 + 46541 19383 29313 29327 53749 53749 0.011967995347504257 TYVEVWNDF 9 Unmodified _TYVEVWNDF_ 0 0 0 ENSG00000198858|ENST00000361574|R3HDM4 ENSG00000198858|ENST00000361574|R3HDM4 ENSG00000198858|ENST00000361574|R3HDM4 MSMS UPN48_class_I_Rep_1 5 586.7677612304688 2 586.766571 1171.51859 NaN NaN NaN NaN NaN NaN NaN 77.945 1 81.467 80.967 81.967 3.5221 0 0 0 0.37891 1 18573 18573 5.7319 2.1354 1 46542 5476 29314 29328 53750 53750 -0.06030857518908306 TYVSGTLRF 9 Unmodified _TYVSGTLRF_ 0 0 0 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 522.2796630859375 2 522.279649 1042.54475 0.29163 0.00015231 0.077373 4.041E-05 0.36901 0.00019272 522.2795873927413 51.294 0.7506 54.819 54.427 55.178 3.5246 129 53 3 0 0 0 0.0070571 3 10586 10500;10540;10586 86.332 42.474 1 597090 46543 427 29315 29329 53751;53752;53753 53753 0.02517456443251831 TYVSGTLRF 9 Unmodified _TYVSGTLRF_ 0 0 0 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 522.27978515625 2 522.279649 1042.54475 0.3745 0.0001956 -0.069621 -3.6362E-05 0.30488 0.00015923 522.2794988796352 51.192 0.88307 54.86 54.404 55.287 3.6679 130 61 3 0 0 0 0.0094161 2 10566 10463;10566 70.332 34.205 1 511390 46544 427 29315 29329 53754;53755 53755 0.02517456443251831 TYVSGTLRF 9 Unmodified _TYVSGTLRF_ 0 0 0 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1 CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant CEPT1|p.S288Ffs*9|1|0.11|ENSG00000134255|chr1:111182815-111182815|C/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_3 7 522.2799072265625 2 522.279649 1042.54475 0.29076 0.00015186 0.041438 2.1642E-05 0.3322 0.0001735 522.2795516456639 51.181 0.71378 54.791 54.504 55.218 3.6105 122 52 3 0 0 0 0.0078401 3 10475 10434;10475;10553 96.367 52.508 1 602590 46545 427 29315 29329 53756;53757;53758 53757 0.02517456443251831 TYVVTLMGL 9 Unmodified _TYVVTLMGL_ 0 0 0 L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|77|2|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|77|2|anti-sense L1M4_dup17115|chr15:101228060-101229629:+|3.0746218092189785|0.0550366248049071|5.8|151.0|77|2|anti-sense MSMS UPN48_class_I_Rep_1 5 498.7735900878906 2 498.775354 995.536154 NaN NaN NaN NaN NaN NaN NaN 53.625 1 57.139 56.639 57.639 3.5143 0 0 0 0.2088 1 11274 11274 15.847 0.5987 1 46546 8859 29316 29330 53759 53759 0.038207664824312815 TYVWHATER 9 Unmodified _TYVWHATER_ 0 0 0 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 MULTI-SECPEP UPN48_class_I_Rep_2 6 581.2946166992188 2 581.78563 1161.55671 0.54381 0.00031638 -0.82752 -0.00048144 -0.28372 -0.00016506 581.7847401800116 60.981 0.2217 64.46 64.352 64.573 3.4785 23 18 2 0 0 0 0.11309 1 13523 13523 13.906 1.6654 1 97969 46547 5452 29317 29331 53760 53760 -0.017609268135629463 TYVWVFQF 8 Unmodified _TYVWVFQF_ 0 0 0 REV__L1MB3_dup1706|chr2:32198880-32199402:-|1.0291972275347858|0.2476149895137357|2.06|151.0|27|1|anti-sense REV__L1MB3_dup1706|chr2:32198880-32199402:-|1.0291972275347858|0.2476149895137357|2.06|151.0|27|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 545.2730712890625 2 545.273835 1088.53312 0.43296 0.00023608 -1.2927 -0.0007049 -0.85979 -0.00046882 545.2729348589902 50.612 0.62679 54.137 53.891 54.517 3.5246 59 41 2 0 0 0 0.82752 1 10470 10470 12.532 0 1 150650 + 46548 25846 29318 29332 53761 53761 -0.007607405801081768 TYVYFTNEL 9 Unmodified _TYVYFTNEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS UPN48_class_I_Rep_1 5 575.2763671875 2 575.276772 1148.53899 0.44717 0.00025725 -0.11903 -6.8475E-05 0.32815 0.00018877 575.2766583820576 71.049 0.64723 74.515 74.324 74.971 3.466 90 64 2 0 0 0 0.10956 1 16575 16575 32.037 14.925 1 181720 46549 2366 29319 29333 53762 53762 -0.02933686859091722 TYVYFTNEL 9 Unmodified _TYVYFTNEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MATCH UPN48_class_I_Rep_3 7 2 575.276772 1148.53899 0.53223 0.00030618 -0.44003 -0.00025314 0.092198 5.3039E-05 575.276554265284 70.861 0.55882 74.379 74.184 74.743 3.5185 -0.067877 -0.00019372 NaN 32.037 82 59 2 NaN NaN NaN NaN 0 NaN NaN 0 163730 46550 2366 29319 29333 -0.02933686859091722 TYVYHIFF 8 Unmodified _TYVYHIFF_ 0 0 0 L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 545.2734985351562 2 545.273835 1088.53312 0.43296 0.00023608 -1.2927 -0.0007049 -0.85979 -0.00046882 545.2729348589902 50.612 0.62679 54.137 53.891 54.517 3.5246 59 41 2 0 0 0 0.82752 1 10343 10343 26.341 4.5946 1 150650 46551 14050 29320 29334 53763 53763 -0.007607405801081768 TYVYHIFF 8 Unmodified _TYVYHIFF_ 0 0 0 L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_1 5 545.27294921875 2 545.273835 1088.53312 NaN NaN NaN NaN NaN NaN NaN 56.957 1 60.452 59.952 60.952 3.4942 0 0 0 0.39408 1 12300 12300 10.183 1.5901 1 46552 14050 29320 29334 53764 53764 -0.007607405801081768 TYVYHIFF 8 Unmodified _TYVYHIFF_ 0 0 0 L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.274169921875 2 545.273835 1088.53312 0.45753 0.00024948 -0.86457 -0.00047142 -0.40703 -0.00022194 545.2732201940141 50.413 0.57285 54.108 53.897 54.47 3.6946 46 34 2 0 0 0 0.82752 2 10355 10291;10355 19.439 3.2899 1 165410 46553 14050 29320 29334 53765;53766 53766 -0.007607405801081768 TYVYHIFF 8 Unmodified _TYVYHIFF_ 0 0 0 L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_2 6 545.2735595703125 2 545.273835 1088.53312 NaN NaN NaN NaN NaN NaN NaN 57.002 1 60.535 60.035 61.035 3.5333 0 0 0 0.38221 1 12291 12291 14.582 2.9414 1 46554 14050 29320 29334 53767 53767 -0.007607405801081768 TYVYHIFF 8 Unmodified _TYVYHIFF_ 0 0 0 L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense L1PA16_dup13294|chr19:36563495-36565258:+|1.8151050807598288|0.0473538853851584|5.26|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_3 7 545.2741088867188 2 545.273835 1088.53312 NaN NaN NaN NaN NaN NaN NaN 56.982 1 60.524 60.024 61.024 3.5427 0 0 0 0.39408 1 12216 12216 10.183 1.5901 1 46555 14050 29320 29334 53768 53768 -0.007607405801081768 TYWEMEQR 8 Unmodified _TYWEMEQR_ 0 0 0 MSTA-int_dup1338|chr7:138511765-138513369:-|2.1148945201110667|0.0365477884716555|5.85|150.0|5|1|sense MSTA-int_dup1338|chr7:138511765-138513369:-|2.1148945201110667|0.0365477884716555|5.85|150.0|5|1|sense MSTA-int_dup1338|chr7:138511765-138513369:-|2.1148945201110667|0.0365477884716555|5.85|150.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 571.7507934570312 2 571.750398 1141.48624 NaN NaN NaN NaN NaN NaN NaN 34.3 1 37.98 37.48 38.48 3.6797 0 0 0 0.40472 1 5434 5434 4.3292 0.73274 1 46556 16542 29321 29335 53769 53769 -0.07883968193550572 TYYAVGNLYI 10 Unmodified _TYYAVGNLYI_ 0 0 0 REV__Tigger3b_dup4457|chr11:60896743-60897455:+|1.6193219242621253|0.4069655196371726|1.99|151.0|42|2|anti-sense REV__Tigger3b_dup4457|chr11:60896743-60897455:+|1.6193219242621253|0.4069655196371726|1.99|151.0|42|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.3025512695312 2 588.800414 1175.58628 0.39766 0.00023414 1.0364 0.00061026 1.4341 0.0008444 588.8009641957403 55.808 0.47482 59.363 59.125 59.6 3.5554 59 33 2 0 0 0 0.47413 1 11926 11926 13.906 0.86358 1 163860 + 46557 32752 29322 29336 53770 53770 0.005505924119233896 TYYGSFVTR 9 Unmodified _TYYGSFVTR_ 0 0 0 ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H ENST00000517974.1_1_8:117671049-117768052:-|nuORF ENST00000517974.1_1_8:117671049-117768052:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 547.2694702148438 2 547.269281 1092.52401 0.35035 0.00019174 0.072989 3.9945E-05 0.42334 0.00023168 547.2692601230754 46.974 1.0534 46.974 46.648 47.701 0 283 103 4 0 0 0 0.0055684 5 9724 9612;9649;9687;9724;9763 128.57 68.499 1 2680100 46558 3484 29323 29337 53771;53772;53773;53774;53775 53774 -0.018551339364421437 TYYMIPFSL 9 Unmodified _TYYMIPFSL_ 0 0 0 L1MB7_dup6923|chr5:142776273-142777110:-|1.1922623502547804|0.0266241097890666|5.48|150.0|8|1|sense L1MB7_dup6923|chr5:142776273-142777110:-|1.1922623502547804|0.0266241097890666|5.48|150.0|8|1|sense L1MB7_dup6923|chr5:142776273-142777110:-|1.1922623502547804|0.0266241097890666|5.48|150.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 567.7819213867188 2 567.780636 1133.54672 NaN NaN NaN NaN NaN NaN NaN 64.26 1 67.718 67.218 68.218 3.4578 0 0 0 0.38478 1 14533 14533 4.3292 1.0479 1 46559 10866 29324 29338 53776 53776 -0.014712508631873789 TYYNVIYD 8 Unmodified _TYYNVIYD_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS UPN47_class_I_Rep_1 2 525.7440795898438 2 525.742565 1049.47058 -0.10686 -5.6179E-05 4.0823 0.0021463 3.9755 0.0020901 525.7442324143697 35.423 0.099594 39.099 39.032 39.131 3.6762 7 5 2 0 0 0 0.82752 1 6499 6499 4.756 0 1 33398 46560 2856 29325 29339 53777 53777 -0.052179314389377396 TYYNVIYD 8 Unmodified _TYYNVIYD_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MSMS UPN47_class_I_Rep_2 3 525.7440795898438 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 33.37 1 36.81 36.31 37.31 3.4398 0 0 0 0.39996 1 5902 5902 7.9102 0 1 46561 2856 29325 29339 53778 53778 -0.052179314389377396 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 567.3036499023438 2 567.303124 1132.5917 0.51821 0.00029398 -0.30691 -0.00017411 0.21131 0.00011988 567.3029450622698 65.064 0.27664 68.518 68.331 68.607 3.4541 47 21 3 0 0 0 0.14216 2 14745 14745;14788 26.268 3.5319 1 130810 46562 3160 29326 29340 53779;53780 53779 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 567.3023071289062 2 567.303124 1132.5917 0.51569 0.00029255 -0.41956 -0.00023802 0.09613 5.4535E-05 567.3027859417718 65.235 0.2289 68.689 68.59 68.819 3.4541 20 15 2 0 0 0 0.20317 1 14812 14812 20.415 3.3016 1 92058 46563 3160 29326 29340 53781 53781 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 567.302978515625 2 567.303124 1132.5917 0.52006 0.00029503 -0.32583 -0.00018484 0.19423 0.00011019 567.3028279755029 64.932 0.07798 68.411 68.353 68.431 3.4792 14 6 3 0 0 0 0.43153 1 14703 14703 6.2058 2.2614 1 116330 46564 3160 29326 29340 53782 53782 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 567.8048706054688 2 567.303124 1132.5917 0.51869 0.00029426 -0.10195 -5.7837E-05 0.41674 0.00023642 567.3030675888688 65.157 0.23503 68.636 68.449 68.684 3.4792 20 15 2 0 0 0 0.20317 1 14775 14775 20.415 3.3016 1 114780 46565 3160 29326 29340 53783 53783 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MSMS UPN48_class_I_Rep_3 7 567.3033447265625 2 567.303124 1132.5917 NaN NaN NaN NaN NaN NaN NaN 64.7 1 68.208 67.708 68.708 3.5083 0 0 0 0.092202 1 14563 14563 26.268 3.5319 1 46566 3160 29326 29340 53784 53784 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MSMS UPN48_class_I_Rep_3 7 567.3043212890625 2 567.303124 1132.5917 NaN NaN NaN NaN NaN NaN NaN 64.824 1 68.332 67.832 68.832 3.5083 0 0 0 0.13613 1 14601 14601 20.415 3.3016 1 46567 3160 29326 29340 53785 53785 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MSMS UPN48_class_I_Rep_3 7 567.3021850585938 2 567.303124 1132.5917 NaN NaN NaN NaN NaN NaN NaN 64.866 1 68.374 67.874 68.874 3.5081 0 0 0 0.21832 1 14614 14614 15.248 1.3424 1 46568 3160 29326 29340 53786 53786 0.030703159943641367 TYYTKFNL 8 Unmodified _TYYTKFNL_ 0 0 0 REV__L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|28|2|sense REV__L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|28|2|sense MSMS UPN47_class_I_Rep_2 3 525.2688598632812 2 525.26875 1048.52295 NaN NaN NaN NaN NaN NaN NaN 36.75 1 40.149 39.649 40.649 3.3988 0 0 0 0.4044 1 6930 6930 4.756 0 1 + 46569 26654 29327 29341 53787 53787 0.00062651694656779 TYYYHFPKFYR 11 Unmodified _TYYYHFPKFYR_ 0 0 0 REV__Tigger1_dup10931|chr17:61740569-61742948:-|1.329105654994564|0.0399665162459512|5.06|151.0|49|3|sense REV__Tigger1_dup10931|chr17:61740569-61742948:-|1.329105654994564|0.0399665162459512|5.06|151.0|49|3|sense MSMS UPN48_class_I_Rep_1 5 529.2601928710938 3 528.925988 1583.75613 NaN NaN NaN NaN NaN NaN NaN 30.892 1 34.434 33.934 34.934 3.542 0 0 0 0.38417 1 4499 4499 0.094841 0 1 + 46570 32345 29328 29342 53788 53788 -0.01239291585693536 UGGAMPPPSP 10 Unmodified _UGGAMPPPSP_ 0 0 0 REV__ENSG00000113811|ENST00000495461|SELENOK REV__ENSG00000113811|ENST00000495461|SELENOK MSMS UPN46_class_I_Rep_3 1 481.169921875 2 481.171181 960.32781 NaN NaN NaN NaN NaN NaN NaN 35.128 1 35.128 34.628 35.628 0 0 0 0 0.53105 1 6358 6358 0 0 0 + 46571 18517 29329 29343 53789 53789 -0.1539408593692997 VAAAPYGGPIA 11 Unmodified _VAAAPYGGPIA_ 0 0 0 nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16 nc|ENSG00000215305|Q9H269-2|VPS16 nc|ENSG00000215305|Q9H269-2|VPS16 MULTI-MSMS UPN47_class_I_Rep_2 3 493.7690124511719 2 493.768917 985.523281 0.34705 0.00017136 -0.44328 -0.00021888 -0.09623 -4.7515E-05 493.76859268988915 54.123 0.70198 57.441 57.108 57.81 3.3187 68 39 2 0 0 0 0.54074 1 12251 12251 6.7232 0.51738 1 179500 46572 5636 29330 29344 53790 53790 0.0299407141451411 VAAARARLGP 10 Unmodified _VAAARARLGP_ 0 0 0 ENST00000291442.3_1_19:17356425-17356737:-|nuORF ENST00000291442.3_1_19:17356425-17356737:-|nuORF ENST00000291442.3_1_19:17356425-17356737:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.30889892578125 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 109.48 1 113.01 112.51 113.51 3.5307 0 0 0 0.53105 1 26674 26674 10.074 0.72649 1 46573 6046 29331 29345 53791 53791 0.09687691011174593 VAAARARLGP 10 Unmodified _VAAARARLGP_ 0 0 0 ENST00000291442.3_1_19:17356425-17356737:-|nuORF ENST00000291442.3_1_19:17356425-17356737:-|nuORF ENST00000291442.3_1_19:17356425-17356737:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.3097839355469 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 109.53 1 113.06 112.56 113.56 3.5307 0 0 0 0.53105 1 26688 26688 10.074 0.72649 1 46574 6046 29331 29345 53792 53792 0.09687691011174593 VAAARHFL 8 Unmodified _VAAARHFL_ 0 0 0 REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|316|2|anti-sense REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|316|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 442.7592468261719 2 442.758687 883.502821 -0.28968 -0.00012826 2.4962 0.0011052 2.2065 0.00097695 442.7594885174085 82.116 0.05825 85.453 85.438 85.496 3.337 9 5 2 0 0 0 0.82752 1 20577 20577 0.79363 0 1 129580 + 46575 28971 29332 29346 53793 53793 0.05640945545383147 VAAARHFL 8 Unmodified _VAAARHFL_ 0 0 0 REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|316|2|anti-sense REV__L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|316|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 442.758687 883.502821 -0.1813 -8.0271E-05 1.8146 0.00080345 1.6333 0.00072318 442.7595091881517 81.862 0.040207 85.246 85.214 85.254 3.3839 -0.10353 -0.00012126 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 53237 + 46576 28971 29332 29346 0.05640945545383147 VAAEECGSVV 10 Unmodified _VAAEECGSVV_ 0 0 0 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 ENSG00000143971|ENST00000272342|ETAA1 MSMS UPN46_class_I_Rep_3 1 482.2265319824219 2 482.226225 962.437897 NaN NaN NaN NaN NaN NaN NaN 23.8 1 23.8 23.3 24.3 0 0 0 0 0.53105 1 3041 3041 5.7319 0 1 46577 3337 29333 29347 53794 53794 -0.0448246183344736 VAAKPMKK 8 Unmodified _VAAKPMKK_ 0 0 0 Charlie5_dup2080|chr15:63548961-63550023:-|3.3251945032318067|0.1445381162050155|4.52|151.0|20|2|sense Charlie5_dup2080|chr15:63548961-63550023:-|3.3251945032318067|0.1445381162050155|4.52|151.0|20|2|sense Charlie5_dup2080|chr15:63548961-63550023:-|3.3251945032318067|0.1445381162050155|4.52|151.0|20|2|sense MSMS UPN47_class_I_Rep_1 2 436.774658203125 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 82.764 1 86.303 85.803 86.803 3.5386 0 0 0 0.40625 1 20684 20684 2.3027 1.5091 1 46578 533 29334 29348 53795 53795 0.0904392713028983 VAALREKR 8 Unmodified _VAALREKR_ 0 0 0 MER4D_dup655|chr8:141144552-141145534:+|5.397706919158068|0.3097085126971373|4.12|151.0|44|1|anti-sense MER4D_dup655|chr8:141144552-141145534:+|5.397706919158068|0.3097085126971373|4.12|151.0|44|1|anti-sense MER4D_dup655|chr8:141144552-141145534:+|5.397706919158068|0.3097085126971373|4.12|151.0|44|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79510498046875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 24.18 1 27.531 27.031 28.031 3.3509 0 0 0 0.40738 1 3203 3203 0.79363 0 1 46579 16031 29335 29349 53796 53796 0.10392288636899139 VAALVHRQ 8 Unmodified _VAALVHRQ_ 0 0 0 ENSG00000185888|ENST00000366757|PRSS38 ENSG00000185888|ENST00000366757|PRSS38 ENSG00000185888|ENST00000366757|PRSS38 MULTI-MSMS UPN47_class_I_Rep_3 4 447.26885986328125 2 447.269419 892.524284 -0.21122 -9.4471E-05 0.071594 3.2022E-05 -0.13962 -6.245E-05 447.26916579412153 107.53 0.098816 111.07 111.03 111.13 3.5382 23 14 3 0 0 0 0.82752 1 26260 26260 5.2307 0 1 2120300 46580 5125 29336 29350 53797 53797 0.07372330574082753 VAAMHGLWRK 10 Unmodified _VAAMHGLWRK_ 0 0 0 ENST00000605891.5_1_19:647652-647808:-|nuORF ENST00000605891.5_1_19:647652-647808:-|nuORF ENST00000605891.5_1_19:647652-647808:-|nuORF MSMS UPN46_class_I_Rep_3 1 584.8214111328125 2 584.824035 1167.63352 NaN NaN NaN NaN NaN NaN NaN 79.417 1 79.417 78.917 79.917 0 0 0 0 0.53105 1 18654 18654 1.8442 0 1 46581 7678 29337 29351 53798 53798 0.05640593201883348 VAAQRLVL 8 Unmodified _VAAQRLVL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;ENST00000503044.5_1_5:176798183-176798888:+|nuORF;ENST00000514102.5_1_5:176797843-176799073:+|nuORF nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MSMS UPN46_class_I_Rep_3 1 435.28125 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 46.119 1 46.119 45.619 46.619 0 0 0 0 0.40746 1 9431 9431 0.69038 0 1 46582 4410 29338 29352 53799 53799 0.10990385376646827 VAARIWPA 8 Unmodified _VAARIWPA_ 0 0 0 ENST00000336761.10_1_19:1428908-1433813:+|nuORF ENST00000336761.10_1_19:1428908-1433813:+|nuORF ENST00000336761.10_1_19:1428908-1433813:+|nuORF MSMS UPN46_class_I_Rep_3 1 442.259521484375 2 442.261062 882.507572 NaN NaN NaN NaN NaN NaN NaN 13.014 1 13.014 12.514 13.514 0 0 0 0 0.40738 1 273 273 0.79363 0 1 46583 6209 29339 29353 53800 53800 0.06161829688119269 VAAVFFPIIT 10 Unmodified _VAAVFFPIIT_ 0 0 0 REV__L1MB3_dup7056|chr7:139082291-139082846:+|1.0893746535912394|0.0271024449378245|5.33|150.0|24|1|anti-sense REV__L1MB3_dup7056|chr7:139082291-139082846:+|1.0893746535912394|0.0271024449378245|5.33|150.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 539.3218383789062 2 539.320786 1076.62702 NaN NaN NaN NaN NaN NaN NaN 86.767 1 86.767 86.267 87.267 0 0 0 0 0.53105 1 20754 20754 1.6526 0.85899 1 + 46584 25910 29340 29354 53801 53801 0.0917697852216861 VAAVMWRK 8 Unmodified _VAAVMWRK_ 0 0 0 nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511-2|HLA-F MSMS UPN47_class_I_Rep_3 4 480.777099609375 2 480.776022 959.537492 NaN NaN NaN NaN NaN NaN NaN 30.896 1 34.207 33.707 34.707 3.3116 0 0 0 0.40604 1 5194 5194 2.5775 0 1 46585 5535 29341 29355 53802 53802 0.05610445361821803 VAAWIAMLL 9 Unmodified _VAAWIAMLL_ 0 0 0 REV__L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|93|3|anti-sense REV__L1MB2_dup3701|chr7:128964635-128966106:+|3.087052081125793|0.4723208302475526|2.71|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.28759765625 2 494.288431 986.562309 NaN NaN NaN NaN NaN NaN NaN 57.734 1 61.266 60.766 61.766 3.5317 0 0 0 0.381 1 12447 12447 5.2307 0 1 + 46586 25722 29342 29356 53803 53803 0.06849080444544597 VAAWLVVR 8 Unmodified _VAAWLVVR_ 0 0 0 ENSG00000119778.15,ATAD2B,chr2,-,I15.1,23834079,23856008|47|7.21|1|intron;MER52A_dup99|chr2:23835971-23837653:-|3.0736942178539004|0.0601017878688715|5.68|151.0|20|3|sense ENSG00000119778.15,ATAD2B,chr2,-,I15.1,23834079,23856008|47|7.21|1|intron ENSG00000119778.15,ATAD2B,chr2,-,I15.1,23834079,23856008|47|7.21|1|intron MSMS UPN47_class_I_Rep_3 4 457.2822570800781 2 457.284537 912.554522 NaN NaN NaN NaN NaN NaN NaN 36.339 1 39.594 39.094 40.094 3.2547 0 0 0 0.39624 1 6840 6840 9.3474 2.0582 1 46587 2296 29343 29357 53804 53804 0.09474689239277723 VADDDALAEER 11 Unmodified _VADDDALAEER_ 0 0 0 nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6 nc|ENSG00000105993|O75190-4|DNAJB6 nc|ENSG00000105993|O75190-4|DNAJB6 MSMS UPN47_class_I_Rep_1 2 602.2778930664062 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 15.406 1 18.903 18.403 19.403 3.4968 0 0 0 0.38417 1 809 809 0 0 1 46588 1772 29344 29358 53805 53805 -0.05165883192125875 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(73)Y 0 0 1 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS UPN47_class_I_Rep_1 2 546.2814331054688 2 546.281334 1090.54812 -0.0080195 -4.3809E-06 0.32646 0.00017834 0.31844 0.00017396 546.2815042147926 33.156 1.0813 36.855 36.508 37.589 3.6983 133 73 2 0 0 0 0.006828 3 5804 5804;5839;5882 72.968 42.331 1 626140 46589 2347 29345 29359 53806;53807;53808 53806 81 0.006463832255803936 VADKVHLMY 9 Oxidation (M) _VADKVHLM(Oxidation (M))Y_ VADKVHLM(1)Y VADKVHLM(73)Y 0 0 1 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS UPN47_class_I_Rep_2 3 546.281494140625 2 546.281334 1090.54812 0.019518 1.0662E-05 0.3687 0.00020141 0.38821 0.00021207 546.2814717614199 33.423 1.2184 36.863 36.508 37.727 3.4398 201 85 4 0 0 0 0.006828 3 5923 5883;5923;5968 72.968 42.331 1 490230 46590 2347 29345 29359 53809;53810;53811 53810 81 0.006463832255803936 VADPETRTV 9 Unmodified _VADPETRTV_ 0 0 0 ENST00000595792.1_1_19:50369586-50370764:-|nuORF;ENST00000594661.5_1_19:50367579-50369988:-|nuORF;nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP ENST00000595792.1_1_19:50369586-50370764:-|nuORF ENST00000595792.1_1_19:50369586-50370764:-|nuORF MSMS UPN46_class_I_Rep_3 1 494.2575988769531 2 494.258914 986.503274 NaN NaN NaN NaN NaN NaN NaN 28.294 1 28.294 27.794 28.794 0 0 0 0 0.3377 1 4324 4324 8.7454 0.83525 1 46591 864 29346 29360 53812 53812 0.009482756839020112 VADPVEAVL 9 Unmodified _VADPVEAVL_ 0 0 0 ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1 ENST00000537905.5_1_11:71735188-71747007:-|nuORF ENST00000537905.5_1_11:71735188-71747007:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 456.75567626953125 2 456.755475 911.496398 0.048051 2.1948E-05 0.21456 9.8002E-05 0.26261 0.00011995 456.75539220533096 65.4 0.66633 68.756 68.562 69.228 3.3557 63 34 2 0 0 0 0.26948 2 15582 15582;15628 15.847 4.2069 1 128800 46592 3029 29347 29361 53813;53814 53813 0.037109628033249464 VADPVEAVL 9 Unmodified _VADPVEAVL_ 0 0 0 ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1 ENST00000537905.5_1_11:71735188-71747007:-|nuORF ENST00000537905.5_1_11:71735188-71747007:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 456.7554626464844 2 456.755475 911.496398 -0.161 -7.3538E-05 0.57644 0.00026329 0.41544 0.00018975 456.75548039269535 65.792 0.81853 69.051 68.608 69.427 3.2588 92 50 2 0 0 0 0.074367 3 15762 15715;15762;15812 39.957 11.47 1 184150 46593 3029 29347 29361 53815;53816;53817 53816 0.037109628033249464 VADPVEAVL 9 Unmodified _VADPVEAVL_ 0 0 0 ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1 ENST00000537905.5_1_11:71735188-71747007:-|nuORF ENST00000537905.5_1_11:71735188-71747007:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 456.7554016113281 2 456.755475 911.496398 -0.17634 -8.0544E-05 0.71469 0.00032644 0.53835 0.0002459 456.75556867742745 65.627 0.71196 68.807 68.602 69.314 3.1795 96 43 3 0 0 0 0.066041 2 15774 15774;15817 42.095 11.87 1 192880 46594 3029 29347 29361 53818;53819 53818 0.037109628033249464 VADQIVTKL 9 Unmodified _VADQIVTKL_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A;TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS UPN47_class_I_Rep_2 3 493.7972106933594 2 493.797675 985.580796 0.057897 2.8589E-05 -0.06437 -3.1786E-05 -0.0064733 -3.1965E-06 493.7976801632548 45.539 0.4636 48.892 48.567 49.031 3.3535 41 27 2 0 0 0 0.41587 2 9591 9591;9636 7.1017 0 1 61532 46595 2720;33467 29348 29362 53820;53821 53820 0.08742913620085346 VADTFQDYF 9 Unmodified _VADTFQDYF_ 0 0 0 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant;ENSG00000185009|ENST00000355264|AP3M1 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 553.2454833984375 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 70.895 1 74.267 73.767 74.767 3.3713 0 0 0 0.37891 1 17254 17254 5.7319 0 1 46596 401 29349 29363 53822 53822 -0.07166832927282485 VADTFQDYF 9 Unmodified _VADTFQDYF_ 0 0 0 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant;ENSG00000185009|ENST00000355264|AP3M1 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 553.24658203125 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 71.087 1 74.369 73.869 74.869 3.2828 0 0 0 0.34878 1 17355 17355 8.1555 1.9497 1 46597 401 29349 29363 53823 53823 -0.07166832927282485 VADTFQDYF 9 Unmodified _VADTFQDYF_ 0 0 0 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant;ENSG00000185009|ENST00000355264|AP3M1 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant MSMS UPN47_class_I_Rep_2 3 553.2451171875 2 553.245472 1104.47639 NaN NaN NaN NaN NaN NaN NaN 71.213 1 74.503 74.003 75.003 3.2899 0 0 0 0.34878 1 17391 17391 8.1555 1.9497 1 46598 401 29349 29363 53824 53824 -0.07166832927282485 VAEESRQVL 9 Unmodified _VAEESRQVL_ 0 0 0 nc|ENSG00000101353|Q9H579-2|MROH8;ENSG00000101353|ENST00000343811|MROH8 nc|ENSG00000101353|Q9H579-2|MROH8 nc|ENSG00000101353|Q9H579-2|MROH8 MSMS UPN46_class_I_Rep_3 1 515.7804565429688 2 515.780013 1029.54547 NaN NaN NaN NaN NaN NaN NaN 34.319 1 34.319 33.819 34.819 0 0 0 0 0.3824 1 6114 6114 4.897 0 1 46599 1567 29350 29364 53825 53825 0.03188251092274186 VAELKKAII 9 Unmodified _VAELKKAII_ 0 0 0 REV__L1MC2_dup5461|chr17:30501794-30502505:+|1.0517670805854986|0.1424628426382019|2.88|150.0|19|3|sense REV__L1MC2_dup5461|chr17:30501794-30502505:+|1.0517670805854986|0.1424628426382019|2.88|150.0|19|3|sense MSMS UPN47_class_I_Rep_1 2 492.8262634277344 2 492.826235 983.637917 NaN NaN NaN NaN NaN NaN NaN 59.082 1 62.5 62 63 3.4171 0 0 0 0.38916 1 13692 13692 3.2813 0 1 + 46600 26689 29351 29365 53826 53826 0.14544380896461462 VAEQYPLR 8 Unmodified _VAEQYPLR_ 0 0 0 REV__ENST00000565534.5_1_15:75660179-75660924:-|nuORF REV__ENST00000565534.5_1_15:75660179-75660924:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.2663269042969 2 488.266542 974.51853 -0.26641 -0.00013008 0.033468 1.6341E-05 -0.23294 -0.00011374 488.26640403474823 40.004 0.79146 43.67 43.296 44.087 3.6668 95 57 2 0 0 0 0.82752 1 7837 7837 11.64 11.64 1 155330 + 46601 19338 29352 29366 53827 53827 0.03025187271748564 VAESAPPHGSL 11 Unmodified _VAESAPPHGSL_ 0 0 0 REV__nc|ENSG00000169247|Q8TF17-4|SH3TC2 REV__nc|ENSG00000169247|Q8TF17-4|SH3TC2 MULTI-MSMS UPN47_class_I_Rep_1 2 532.7716064453125 2 532.772188 1063.52982 -0.07547 -4.0208E-05 0.32682 0.00017412 0.25135 0.00013391 532.7723689193095 33.112 0.9659 36.81 36.309 37.275 3.6983 186 58 4 0 0 0 0.295 1 5716 5716 16.149 0 1 724580 + 46602 20305 29353 29367 53828 53828 0.0005996457523451681 VAESAPPHGSL 11 Unmodified _VAESAPPHGSL_ 0 0 0 REV__nc|ENSG00000169247|Q8TF17-4|SH3TC2 REV__nc|ENSG00000169247|Q8TF17-4|SH3TC2 MULTI-MSMS UPN47_class_I_Rep_2 3 532.7721557617188 2 532.772188 1063.52982 -0.088715 -4.7265E-05 0.31708 0.00016893 0.22836 0.00012166 532.772323269816 33.341 1.1022 36.781 36.4 37.502 3.4398 230 76 4 0 0 0 0.295 4 5944 5824;5867;5904;5944 32.786 1.2772 1 692260 + 46603 20305 29353 29367 53829;53830;53831;53832 53832 0.0005996457523451681 VAFEKRRKD 9 Unmodified _VAFEKRRKD_ 0 0 0 REV__ENST00000483151.5_1_6:33261379-33266279:-|nuORF REV__ENST00000483151.5_1_6:33261379-33266279:-|nuORF MSMS UPN47_class_I_Rep_1 2 574.829833984375 2 574.830372 1147.64619 NaN NaN NaN NaN NaN NaN NaN 53.231 1 56.759 56.259 57.259 3.5278 0 0 0 0.39518 1 11909 11909 1.8442 0 1 + 46604 21317 29354 29368 53833 53833 0.07827327865788902 VAFFNSRISS 10 Unmodified _VAFFNSRISS_ 0 0 0 L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|72|3|sense L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|72|3|sense L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|72|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.7947387695312 2 564.29583 1126.57711 0.50789 0.0002866 -1.5094 -0.00085176 -1.0015 -0.00056516 564.7964734911686 28.657 0.085707 32.214 32.177 32.262 3.5571 11 8 2 0 0 0 0.56118 1 3869 3869 2.9952 0 1 60237 46605 9415 29355 29369 53834 53834 0.018882438462242135 VAFGLLLHAR 10 Unmodified _VAFGLLLHAR_ 0 0 0 REV__ENST00000368202.4_1_6:128840173-128841710:-|nuORF REV__ENST00000368202.4_1_6:128840173-128841710:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 548.8350219726562 2 548.834926 1095.6553 0.068033 3.7339E-05 0.41389 0.00022716 0.48192 0.0002645 548.8349853086355 26.952 0.26822 26.952 26.94 27.209 0 28 22 2 0 0 0 0.56281 1 3957 3957 1.8442 0.51471 1 486670 + 46606 21940 29356 29370 53835 53835 0.11129721222141598 VAFHPDPTRLL 11 Unmodified _VAFHPDPTRLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-SECPEP UPN46_class_I_Rep_3 1 422.5926818847656 3 422.571545 1264.69281 0.038136 1.6115E-05 0.0058184 2.4587E-06 0.043954 1.8574E-05 422.5715831545085 52.444 0.025349 52.444 52.435 52.46 0 4 2 2 0 0 0 22.551 1 11215 11215 2.2527 0 1 85114 46607 5018 29357 29371 53836 53836 0.07104767697069292 VAFLLRNL 8 Unmodified _VAFLLRNL_ 0 0 0 L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|264|3|anti-sense L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|264|3|anti-sense L1PB1_dup388|chr1:116047765-116051718:+|5.725375432422084|0.1389314332830383|5.36|151.0|264|3|anti-sense MSMS UPN46_class_I_Rep_3 1 473.3053894042969 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 57.963 1 57.963 57.463 58.463 0 0 0 0 0.40581 1 12731 12731 2.8892 0 1 46608 15099 29358 29372 53837 53837 0.10622958410738192 VAFSMSFTSLI 11 Unmodified _VAFSMSFTSLI_ 0 0 0 L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|110|1|anti-sense L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|110|1|anti-sense L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|110|1|anti-sense MSMS UPN48_class_I_Rep_2 6 601.8091430664062 2 601.809925 1201.6053 NaN NaN NaN NaN NaN NaN NaN 75.638 1 79.239 78.739 79.739 3.6011 0 0 0 0.38417 1 17844 17844 4.897 0.95262 1 46609 10284 29359 29373 53838 53838 0.012558057113210452 VAFVAYLPD 9 Unmodified _VAFVAYLPD_ 0 0 0 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MSMS UPN48_class_I_Rep_1 5 497.7656555175781 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 37.195 1 40.702 40.202 41.202 3.507 0 0 0 0.39326 1 6297 6297 2.3027 0 1 + 46610 21254 29360 29374 53839 53839 0.02011553182978787 VAFVVGEYDF 10 Unmodified _VAFVVGEYDF_ 0 0 0 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 nc|ENSG00000274487|A6NEC2-2|NPEPPSL1 MULTI-MSMS UPN48_class_I_Rep_1 5 573.281494140625 2 573.279315 1144.54408 0.43216 0.00024775 1.0855 0.00062232 1.5177 0.00087006 573.2799195808876 77.819 0.12756 81.341 81.225 81.353 3.5221 21 12 2 0 0 0 0.56309 1 18519 18519 1.6526 0 1 92082 46611 3211 29361 29375 53840 53840 -0.022413829964762044 VAFWCLMHIG 10 Unmodified _VAFWCLMHIG_ 0 0 0 REV__L1PA6_dup5324|chr16:21329024-21335176:-|1.6476788366102642|0.0586656278025271|4.81|150.0|182|1|anti-sense REV__L1PA6_dup5324|chr16:21329024-21335176:-|1.6476788366102642|0.0586656278025271|4.81|150.0|182|1|anti-sense MSMS UPN48_class_I_Rep_3 7 588.7890014648438 2 588.788272 1175.56199 NaN NaN NaN NaN NaN NaN NaN 31.114 1 34.828 34.328 35.328 3.7146 0 0 0 0.53105 1 4564 4564 1.8442 0 1 + 46612 29936 29362 29376 53841 53841 -0.018766625469879727 VAGAHYYQ 8 Unmodified _VAGAHYYQ_ 0 0 0 MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|19|1|anti-sense;MLT1D_dup6222|chr5:69952066-69952505:+|3.2543735305528894|0.0198106707667125|7.36|150.0|19|1|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|19|1|anti-sense MLT1D_dup6236|chr5:70827134-70827573:+|1.3642205692391476|0.0200225090343466|6.09|143.0|19|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 454.71685791015625 2 454.716685 907.418816 0.19716 8.9654E-05 0.68287 0.00031051 0.88003 0.00040017 454.71692542325735 85.573 0.036942 85.573 85.555 85.592 0 5 3 2 0 0 0 0.82752 1 20418 20418 0.79363 0 1 81864 46613 16355 29363 29377 53842 53842 -0.038596303421968514 VAGAIGSELFL 11 Unmodified _VAGAIGSELFL_ 0 0 0 REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 538.8028564453125 2 538.802957 1075.59136 0.47304 0.00025487 -0.31882 -0.00017178 0.15422 8.3092E-05 538.8026585684895 87.48 0.33358 91.117 90.851 91.185 3.6372 86 38 3 0 0 0 0.295 1 21842 21842 16.149 0 1 300390 + 46614 23229 29364 29378 53843 53843 0.05658896274530889 VAGAIGSELFL 11 Unmodified _VAGAIGSELFL_ 0 0 0 REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 538.8028564453125 2 538.802957 1075.59136 0.47457 0.0002557 -0.66309 -0.00035728 -0.18852 -0.00010158 538.8025359880667 87.618 0.25205 91.255 91.175 91.427 3.6371 54 28 3 0 0 0 0.295 1 21877 21877 16.149 0 1 154340 + 46615 23229 29364 29378 53844 53844 0.05658896274530889 VAGAIGSELFL 11 Unmodified _VAGAIGSELFL_ 0 0 0 REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF MSMS UPN47_class_I_Rep_2 3 538.80322265625 2 538.802957 1075.59136 NaN NaN NaN NaN NaN NaN NaN 87.383 1 90.824 90.324 91.324 3.4407 0 0 0 0.22906 1 21721 21721 16.149 0 1 + 46616 23229 29364 29378 53845 53845 0.05658896274530889 VAGAIGSELFL 11 Unmodified _VAGAIGSELFL_ 0 0 0 REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF REV__ENST00000606066.1_1_20:44520620-44521015:+|nuORF MSMS UPN47_class_I_Rep_2 3 538.8030395507812 2 538.802957 1075.59136 NaN NaN NaN NaN NaN NaN NaN 87.895 1 91.342 90.842 91.842 3.4471 0 0 0 0.22906 1 21852 21852 16.149 0 1 + 46617 23229 29364 29378 53846 53846 0.05658896274530889 VAGELWSSGFS 11 Unmodified _VAGELWSSGFS_ 0 0 0 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 REV__nc|ENSG00000112659|Q8IWT3-3|CUL9 MSMS UPN46_class_I_Rep_3 1 570.2882080078125 2 570.272021 1138.52949 NaN NaN NaN NaN NaN NaN NaN 26.748 1 26.748 26.248 27.248 0 0 0 0 0.28775 1 3872 3872 13.042 0.80181 1 + 46618 18486 29365 29379 53847 53847 -0.03423455144616128 VAGRIRDL 8 Unmodified _VAGRIRDL_ 0 0 0 ENST00000375897.7_1_10:27529503-27529674:-|nuORF ENST00000375897.7_1_10:27529503-27529674:-|nuORF ENST00000375897.7_1_10:27529503-27529674:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 450.27471923828125 2 450.274701 898.534849 -0.2022 -9.1044E-05 -0.13349 -6.0109E-05 -0.33569 -0.00015115 450.27459681165465 84.185 1.1377 87.546 87.086 88.224 3.3615 455 142 5 0 0 0 0.82752 1 21253 21253 0.79363 0 1 6870200 46619 6446 29366 29380 53848 53848 0.08152313228504227 VAGRYRIY 8 Unmodified _VAGRYRIY_ 0 0 0 REV__ENSG00000145780|ENST00000274457|FEM1C REV__ENSG00000145780|ENST00000274457|FEM1C MULTI-SECPEP UPN47_class_I_Rep_1 2 499.7371826171875 2 499.282526 996.550499 -0.063975 -3.1941E-05 -1.8681 -0.00093271 -1.9321 -0.00096465 499.2815202569772 46.651 0.17619 50.351 50.268 50.444 3.6999 19 12 2 0 0 0 0.72333 1 9926 9926 2.5775 0 1 104840 + 46620 19394 29367 29381 53849 53849 0.05208599745549236 VAGVDRPIKQI 11 Unmodified _VAGVDRPIKQI_ 0 0 0 REV__MER21C_dup4554|chr16:53079448-53080213:+|1.001121318446743|0.014416672668245|6.12|150.0|42|2|anti-sense REV__MER21C_dup4554|chr16:53079448-53080213:+|1.001121318446743|0.014416672668245|6.12|150.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.3588256835938 2 598.361505 1194.70846 NaN NaN NaN NaN NaN NaN NaN 83.699 1 87.286 86.786 87.786 3.5871 0 0 0 0.38417 1 20023 20023 1.1933 0.66858 1 + 46621 31241 29368 29382 53850 53850 0.11889054214134376 VAGVLEKQ 8 Unmodified _VAGVLEKQ_ 0 0 0 REV__nc|ENSG00000087510|Q92754-2|TFAP2C REV__nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-MSMS UPN47_class_I_Rep_1 2 422.2501220703125 2 422.25036 842.486168 0.11093 4.6842E-05 0.38253 0.00016152 0.49346 0.00020836 422.2503716580645 109.17 0.51649 112.78 112.61 113.12 3.6046 96 53 3 0 0 0 0.82752 1 26898 26898 2.3027 0 1 2339800 + 46622 17982 29369 29383 53851 53851 0.05862399868760804 VAGVLEKQ 8 Unmodified _VAGVLEKQ_ 0 0 0 REV__nc|ENSG00000087510|Q92754-2|TFAP2C REV__nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-MATCH UPN47_class_I_Rep_3 4 2 422.25036 842.486168 -0.52207 -0.00022044 0.81339 0.00034345 0.29132 0.00012301 422.2505743401066 109.23 0.2738 112.77 112.68 112.96 3.5347 -0.036269 0.00024183 NaN 2.3027 60 36 3 NaN NaN NaN NaN 0 NaN NaN 0 2839600 + 46623 17982 29369 29383 0.05862399868760804 VAGVLEKQ 8 Unmodified _VAGVLEKQ_ 0 0 0 REV__nc|ENSG00000087510|Q92754-2|TFAP2C REV__nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-MATCH UPN48_class_I_Rep_2 6 2 422.25036 842.486168 0.082151 3.4688E-05 0.35666 0.0001506 0.43881 0.00018529 422.25042276544065 109.21 0.28593 112.88 112.82 113.11 3.6715 0.078503 -0.00014388 NaN 2.3027 67 37 2 NaN NaN NaN NaN 0 NaN NaN 0 2009400 + 46624 17982 29369 29383 0.05862399868760804 VAGVLEKQ 8 Unmodified _VAGVLEKQ_ 0 0 0 REV__nc|ENSG00000087510|Q92754-2|TFAP2C REV__nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-MATCH UPN48_class_I_Rep_3 7 2 422.25036 842.486168 0.11106 4.6897E-05 0.74205 0.00031333 0.85312 0.00036023 422.25065220697195 109.11 0.33475 112.78 112.65 112.98 3.6751 -0.01952 0.00018158 NaN 2.3027 64 43 2 NaN NaN NaN NaN 0 NaN NaN 0 3065400 + 46625 17982 29369 29383 0.05862399868760804 VAHFNRLI 8 Unmodified _VAHFNRLI_ 0 0 0 REV__L1MA7_dup240|chr1:112633118-112634094:-|2.456025787032432|0.0252006986419987|6.61|151.0|45|1|anti-sense REV__L1MA7_dup240|chr1:112633118-112634094:-|2.456025787032432|0.0252006986419987|6.61|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 485.5645446777344 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 35.842 1 39.509 39.009 40.009 3.6667 0 0 0 0.40738 1 5862 5862 0.79363 0 1 + 46626 25498 29370 29384 53852 53852 0.07004903608185487 VAHHKHIQ 8 Unmodified _VAHHKHIQ_ 0 0 0 L1MA9_dup1209|chr2:32891567-32892332:+|1.0725113075523796|0.0010820645804186|9.95|101.0|10|1|sense L1MA9_dup1209|chr2:32891567-32892332:+|1.0725113075523796|0.0010820645804186|9.95|101.0|10|1|sense L1MA9_dup1209|chr2:32891567-32892332:+|1.0725113075523796|0.0010820645804186|9.95|101.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 485.27203369140625 2 485.272493 968.530432 NaN NaN NaN NaN NaN NaN NaN 26.968 1 30.311 29.811 30.811 3.3422 0 0 0 0.40738 1 4026 4026 0.79363 0 1 46627 10103 29371 29385 53853 53853 0.04490848805608039 VAHHPKLL 8 Unmodified _VAHHPKLL_ 0 0 0 ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA ENSG00000163362|ENST00000413687|INAVA ENSG00000163362|ENST00000413687|INAVA MSMS UPN47_class_I_Rep_3 4 457.7906799316406 2 457.782162 913.549771 NaN NaN NaN NaN NaN NaN NaN 55.916 1 59.094 58.594 59.594 3.1779 0 0 0 0.40364 1 12816 12816 5.7604 0.52976 1 46628 3997 29372 29386 53854 53854 0.08953805096518863 VAHKAVSWLL 10 Unmodified _VAHKAVSWLL_ 0 0 0 REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.44505 0.00025027 0.051743 2.9097E-05 0.4968 0.00027937 562.3346045071193 110.2 0.27576 110.2 110.11 110.39 0 66 25 3 0 0 0 0.53414 1 27146 27146 7.609 0.31972 1 3929700 + 46629 21649 29373 29387 53855 53855 0.09854301502286944 VAHKAVSWLL 10 Unmodified _VAHKAVSWLL_ 0 0 0 REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF MSMS UPN47_class_I_Rep_2 3 562.3348388671875 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 108.74 1 112.27 111.77 112.77 3.5333 0 0 0 0.53105 1 26412 26412 8.1555 1.4324 1 + 46630 21649 29373 29387 53856 53856 0.09854301502286944 VAHKAVSWLL 10 Unmodified _VAHKAVSWLL_ 0 0 0 REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF MSMS UPN48_class_I_Rep_1 5 562.3344116210938 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 108.73 1 112.37 111.87 112.87 3.6321 0 0 0 0.53105 1 26335 26335 8.1555 1.4324 1 + 46631 21649 29373 29387 53857 53857 0.09854301502286944 VAHLHLRL 8 Unmodified _VAHLHLRL_ 0 0 0 L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|348|3|anti-sense;L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|358|3|anti-sense;L1PA4_dup10914|chr16:72580799-72586932:+|1.2169021267602196|0.0243708768415391|5.64|151.0|288|2|anti-sense L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|348|3|anti-sense L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|348|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.7995300292969 2 479.800886 957.587219 NaN NaN NaN NaN NaN NaN NaN 21.955 1 25.63 25.13 26.13 3.6749 0 0 0 0.40738 1 2470 2470 0.79363 0 1 46632 14309 29374 29388 53858 53858 0.1067289636212081 VAHSIPLWQ 9 Unmodified _VAHSIPLWQ_ 0 0 0 REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1 REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1 MSMS UPN48_class_I_Rep_2 6 525.7913818359375 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 28.388 1 32.019 31.519 32.519 3.6311 0 0 0 0.39518 1 3901 3901 1.8442 0 1 + 46633 19351 29375 29389 53859 53859 0.04301466542756316 VAIAAYLLIL 10 Unmodified _VAIAAYLLIL_ 0 0 0 nc|ENSG00000155275|Q8IYL2-2|TRMT44;ENSG00000155275|ENST00000389737|TRMT44 nc|ENSG00000155275|Q8IYL2-2|TRMT44 nc|ENSG00000155275|Q8IYL2-2|TRMT44 MSMS UPN48_class_I_Rep_3 7 530.3444213867188 2 530.344261 1058.67397 NaN NaN NaN NaN NaN NaN NaN 77.147 1 80.749 80.249 81.249 3.6016 0 0 0 0.53105 1 18206 18206 18.135 2.2878 1 46634 3697 29376 29390 53860 53860 0.14697838073334424 VAIVLSYS 8 Unmodified _VAIVLSYS_ 0 0 0 Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 426.2471008300781 2 426.247286 850.48002 -0.47016 -0.0002004 0.066903 2.8517E-05 -0.40326 -0.00017189 426.24724226299384 97.298 0.48883 100.72 100.46 100.95 3.4216 97 67 2 0 0 0 0.82752 1 24117 24117 0.69038 0 1 227180 46635 33243 29377 29391 53861 53861 0.04879881637248218 VAIVLSYS 8 Unmodified _VAIVLSYS_ 0 0 0 Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 426.247286 850.48002 -0.47016 -0.0002004 0.066903 2.8517E-05 -0.40326 -0.00017189 426.24724226299384 97.298 0.48883 100.72 100.46 100.95 3.4216 0.00083333 0.00024514 NaN 0.69038 97 67 2 NaN NaN NaN NaN 0 NaN NaN 0 227180 46636 33243 29377 29391 0.04879881637248218 VAIVLSYS 8 Unmodified _VAIVLSYS_ 0 0 0 Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 426.247286 850.48002 -0.10002 -4.2634E-05 -0.3225 -0.00013746 -0.42252 -0.0001801 426.2471269985881 97.061 0.48569 100.67 100.41 100.89 3.6088 -0.048558 -8.6827E-05 NaN 0.69038 74 60 2 NaN NaN NaN NaN 0 NaN NaN 0 113610 46637 33243 29377 29391 0.04879881637248218 VAIVLSYS 8 Unmodified _VAIVLSYS_ 0 0 0 Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 426.247286 850.48002 0.08224 3.5055E-05 -0.29098 -0.00012403 -0.20874 -8.8976E-05 426.2471413892479 96.869 0.49937 100.65 100.38 100.88 3.7804 -0.069336 -5.9961E-05 NaN 0.69038 92 63 2 NaN NaN NaN NaN 0 NaN NaN 0 125030 46638 33243 29377 29391 0.04879881637248218 VAIVLSYS 8 Unmodified _VAIVLSYS_ 0 0 0 Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense Tigger16a_dup793|chr7:131477749-131478153:+|1.424901289963138|0.3167401707722631|2.17|151.0|15|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 426.247286 850.48002 0.12086 5.1516E-05 -0.27092 -0.00011548 -0.15006 -6.3961E-05 426.24714027388416 96.864 0.58352 100.77 100.49 101.07 3.9084 0.053784 -4.2854E-05 NaN 0.69038 93 76 2 NaN NaN NaN NaN 0 NaN NaN 0 132500 46639 33243 29377 29391 0.04879881637248218 VAIVSLLLLG 10 Unmodified _VAIVSLLLLG_ 0 0 0 REV__L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|43|1|anti-sense REV__L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|43|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.2786865234375 2 499.336436 996.658318 NaN NaN NaN NaN NaN NaN NaN 17.631 1 17.631 17.131 18.131 0 0 0 0 0.53105 1 1416 1416 0 0 1 + 46640 29021 29378 29392 53862 53862 0.15985551556309474 VAIVSLLLLG 10 Unmodified _VAIVSLLLLG_ 0 0 0 REV__L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|43|1|anti-sense REV__L1PA11_dup2968|chr11:74823782-74824604:+|2.074118862454258|0.3110640447236549|2.74|151.0|43|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.337890625 2 499.336436 996.658318 NaN NaN NaN NaN NaN NaN NaN 17.668 1 17.668 17.168 18.168 0 0 0 0 0.53105 1 1424 1424 0 0 1 + 46641 29021 29378 29392 53863 53863 0.15985551556309474 VAKFLTTTTR 10 Unmodified _VAKFLTTTTR_ 0 0 0 REV__L1PA6_dup2007|chr5:78435234-78441339:-|3.071527030732481|0.1148923742763176|4.74|151.0|311|2|anti-sense REV__L1PA6_dup2007|chr5:78435234-78441339:-|3.071527030732481|0.1148923742763176|4.74|151.0|311|2|anti-sense MSMS UPN48_class_I_Rep_1 5 569.3348388671875 2 569.334956 1136.65536 NaN NaN NaN NaN NaN NaN NaN 24.55 1 28.117 27.617 28.617 3.5667 0 0 0 0.53105 1 2727 2727 0 0 1 + 46642 29851 29379 29393 53864 53864 0.09249676431431908 VAKIQKQP 8 Unmodified _VAKIQKQP_ 0 0 0 L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|22|1|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|22|1|sense L1MA3_dup4528|chr8:92899285-92902099:-|3.600806035104322|0.1520106440087423|4.57|151.0|22|1|sense MSMS UPN48_class_I_Rep_3 7 456.3010559082031 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 40.615 1 44.266 43.766 44.766 3.6509 0 0 0 0.40625 1 7244 7244 2.3027 0 1 46643 9552 29380 29394 53865 53865 0.10114368031076992 VAKIVVVGV 9 Unmodified _VAKIVVVGV_ 0 0 0 REV__ENSG00000070388|ENST00000215530|FGF22 REV__ENSG00000070388|ENST00000215530|FGF22 MULTI-MSMS UPN47_class_I_Rep_1 2 442.3022155761719 2 442.302396 882.590239 0.053235 2.3546E-05 0.14096 6.2348E-05 0.1942 8.5894E-05 442.3022602815299 58.271 0.7961 61.708 61.307 62.103 3.437 88 49 3 0 0 0 0.41259 1 13377 13377 7.2892 0 1 243830 + 46644 17797 29381 29395 53866 53866 0.14424726696279322 VAKIVVVGV 9 Unmodified _VAKIVVVGV_ 0 0 0 REV__ENSG00000070388|ENST00000215530|FGF22 REV__ENSG00000070388|ENST00000215530|FGF22 MSMS UPN47_class_I_Rep_2 3 442.3021240234375 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 59.043 1 62.325 61.825 62.825 3.2818 0 0 0 0.35339 1 13714 13714 7.9102 0 1 + 46645 17797 29381 29395 53867 53867 0.14424726696279322 VAKIVVVGV 9 Unmodified _VAKIVVVGV_ 0 0 0 REV__ENSG00000070388|ENST00000215530|FGF22 REV__ENSG00000070388|ENST00000215530|FGF22 MSMS UPN47_class_I_Rep_2 3 442.30206298828125 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 59.177 1 62.458 61.958 62.958 3.2818 0 0 0 0.28335 1 13755 13755 11.64 0 1 + 46646 17797 29381 29395 53868 53868 0.14424726696279322 VAKKEKPKA 9 Unmodified _VAKKEKPKA_ 0 0 0 nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43 nc|ENSG00000158113|Q8N309-2|LRRC43 nc|ENSG00000158113|Q8N309-2|LRRC43 MULTI-MSMS UPN47_class_I_Rep_1 2 499.82098388671875 2 499.821484 997.628415 -0.23257 -0.00011624 0.23876 0.00011934 0.006189 3.0934E-06 499.82155432653764 39.573 0.54577 43.239 42.885 43.431 3.6668 53 40 2 0 0 0 0.49026 1 7677 7677 1.6526 0 1 68810 46647 3788 29382 29396 53869 53869 0.1295061261093906 VAKLLILLKLK 11 Unmodified _VAKLLILLKLK_ 0 0 0 REV__ENST00000509538.5_1_4:185578328-185578478:+|nuORF REV__ENST00000509538.5_1_4:185578328-185578478:+|nuORF MSMS UPN48_class_I_Rep_1 5 626.4586791992188 2 626.459959 1250.90537 NaN NaN NaN NaN NaN NaN NaN 59.575 1 63.056 62.556 63.556 3.4801 0 0 0 0.38417 1 13102 13102 0 0 1 + 46648 22699 29383 29397 53870 53870 0.2899488577500051 VAKVFHSTS 9 Unmodified _VAKVFHSTS_ 0 0 0 REV__ENST00000260818.10_1_3:132166171-132166270:+|nuORF REV__ENST00000260818.10_1_3:132166171-132166270:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.2662048339844 2 488.266542 974.51853 -0.26641 -0.00013008 0.033468 1.6341E-05 -0.23294 -0.00011374 488.26640403474823 40.004 0.79146 43.67 43.296 44.087 3.6668 95 57 2 0 0 0 0.15122 1 7877 7877 25.399 2.2509 1 155330 + 46649 21555 29384 29398 53871 53871 0.030251872717599326 VAKVFHSTS 9 Unmodified _VAKVFHSTS_ 0 0 0 REV__ENST00000260818.10_1_3:132166171-132166270:+|nuORF REV__ENST00000260818.10_1_3:132166171-132166270:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 488.2663269042969 2 488.266542 974.51853 -0.13378 -6.5318E-05 0.11786 5.7548E-05 -0.015913 -7.7698E-06 488.2664168971098 40.344 0.80441 43.715 43.414 44.219 3.3712 94 55 2 0 0 0 0.26948 1 7996 7996 15.847 1.0089 1 139420 + 46650 21555 29384 29398 53872 53872 0.030251872717599326 VAKVFHSTS 9 Unmodified _VAKVFHSTS_ 0 0 0 REV__ENST00000260818.10_1_3:132166171-132166270:+|nuORF REV__ENST00000260818.10_1_3:132166171-132166270:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 488.266542 974.51853 -0.26641 -0.00013008 0.033468 1.6341E-05 -0.23294 -0.00011374 488.26640403474823 40.004 0.79146 43.67 43.296 44.087 3.6668 -0.10266 -0.00011895 NaN 25.399 95 57 2 NaN NaN NaN NaN 0 NaN NaN 0 155330 + 46651 21555 29384 29398 0.030251872717599326 VAKVLRIN 8 Unmodified _VAKVLRIN_ 0 0 0 HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 456.8023986816406 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 31.234 1 34.963 34.463 35.463 3.7293 0 0 0 0.40625 1 5212 5212 2.3027 0 1 46652 8058 29385 29399 53873 53873 0.13230360785019002 VAKVLRIN 8 Unmodified _VAKVLRIN_ 0 0 0 HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 456.8025207519531 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 31.385 1 35.114 34.614 35.614 3.7293 0 0 0 0.40746 1 5259 5259 0.69038 0 1 46653 8058 29385 29399 53874 53874 0.13230360785019002 VAKVLRIN 8 Unmodified _VAKVLRIN_ 0 0 0 HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense HERV4_I-int_dup309|chr19:58251074-58252143:-|4.334229666675568|0.398716771177784|3.44|151.0|14|2|sense MSMS UPN47_class_I_Rep_1 2 456.8033752441406 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 31.527 1 35.256 34.756 35.756 3.7293 0 0 0 0.40746 1 5302 5302 0.69038 0 1 46654 8058 29385 29399 53875 53875 0.13230360785019002 VALDKQNKH 9 Unmodified _VALDKQNKH_ 0 0 0 ENST00000468572.2_2_1:53662615-53668106:+|nuORF;ENSG00000157184|ENST00000371486|CPT2 ENST00000468572.2_2_1:53662615-53668106:+|nuORF ENST00000468572.2_2_1:53662615-53668106:+|nuORF MSMS UPN46_class_I_Rep_3 1 526.7408447265625 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 118.41 1 118.41 117.91 118.91 0 0 0 0 0.39518 1 29391 29391 1.8442 0 1 46655 3754 29386 29400 53876 53876 0.05371663566097595 VALLQALT 8 Unmodified _VALLQALT_ 0 0 0 REV__ENSG00000165572|ENST00000379485|KBTBD6 REV__ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS UPN47_class_I_Rep_2 3 414.7616882324219 2 414.763104 827.511654 -0.53177 -0.00022056 -0.93105 -0.00038617 -1.4628 -0.00060673 414.76187036065414 80.446 0.14633 83.815 83.765 83.911 3.3694 30 20 2 0 0 0 0.82752 1 20034 20034 0.79363 0 1 838340 + 46656 18708 29387 29401 53877 53877 0.09099874391165486 VALLQALT 8 Unmodified _VALLQALT_ 0 0 0 REV__ENSG00000165572|ENST00000379485|KBTBD6 REV__ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MATCH UPN46_class_I_Rep_3 1 2 414.763104 827.511654 0.072663 3.0138E-05 -3.3529 -0.0013907 -3.2803 -0.0013605 414.76164875657975 83.641 0.20174 83.641 83.568 83.77 0 -0.12637 1.58E-05 NaN 0.79363 52 21 4 NaN NaN NaN NaN 0 NaN NaN 0 273340 + 46657 18708 29387 29401 0.09099874391165486 VALLQALT 8 Unmodified _VALLQALT_ 0 0 0 REV__ENSG00000165572|ENST00000379485|KBTBD6 REV__ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MATCH UPN47_class_I_Rep_1 2 2 414.763104 827.511654 0.013945 5.7838E-06 -3.5742 -0.0014825 -3.5603 -0.0014767 414.7616230944923 80.381 0.073341 83.846 83.799 83.873 3.465 0.07861 -0.0001678 NaN 0.79363 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 90665 + 46658 18708 29387 29401 0.09099874391165486 VALLQALT 8 Unmodified _VALLQALT_ 0 0 0 REV__ENSG00000165572|ENST00000379485|KBTBD6 REV__ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 414.763104 827.511654 -0.53177 -0.00022056 -0.93105 -0.00038617 -1.4628 -0.00060673 414.76187036065414 80.446 0.14633 83.815 83.765 83.911 3.3694 0.047762 0.0020248 NaN 0.79363 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 838340 + 46659 18708 29387 29401 0.09099874391165486 VALSKRSR 8 Unmodified _VALSKRSR_ 0 0 0 REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 458.78778076171875 2 458.787976 915.561398 0.033533 1.5384E-05 0.0686 3.1473E-05 0.10213 4.6857E-05 458.7878206180907 84.162 1.3167 87.585 86.864 88.18 3.4232 428 171 4 0 0 0 0.82752 2 21017 21017;21075 8.5933 0 1 2859400 + 46660 30930 29388 29402 53878;53879 53878 0.10024002119860143 VALSKRSR 8 Unmodified _VALSKRSR_ 0 0 0 REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 458.7878723144531 2 458.787976 915.561398 -0.10967 -5.0314E-05 0.24503 0.00011242 0.13536 6.2103E-05 458.78791173077957 84.182 1.3246 87.544 86.82 88.144 3.3615 413 159 4 0 0 0 0.82752 1 21101 21101 8.5933 0 1 3449500 + 46661 30930 29388 29402 53880 53880 0.10024002119860143 VALSKRSR 8 Unmodified _VALSKRSR_ 0 0 0 REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 458.78741455078125 2 458.787976 915.561398 0.17288 7.9317E-05 1.8667 0.00085643 2.0396 0.00093575 458.7880262738444 84.518 0.24191 88.212 88.133 88.375 3.6937 50 31 2 0 0 0 0.82752 1 20101 20101 2.5775 0 1 354190 + 46662 30930 29388 29402 53881 53881 0.10024002119860143 VALSKRSR 8 Unmodified _VALSKRSR_ 0 0 0 REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense REV__LTR45C_dup242|chr12:57377196-57377690:+|1.698792671781775|0.0107493647291726|7.3|151.0|30|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 458.787976 915.561398 0.20877 9.5779E-05 -0.05858 -2.6876E-05 0.15019 6.8903E-05 458.7878765515035 88.288 0.20053 88.288 88.22 88.421 0 0.038061 -6.3606E-05 NaN 2.5775 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 261350 + 46663 30930 29388 29402 0.10024002119860143 VALVLLFW 8 Unmodified _VALVLLFW_ 0 0 0 REV__ENSG00000197859|ENST00000651351|ADAMTSL2 REV__ENSG00000197859|ENST00000651351|ADAMTSL2 MSMS UPN46_class_I_Rep_3 1 480.8009338378906 2 480.799489 959.584425 NaN NaN NaN NaN NaN NaN NaN 90.902 1 90.902 90.402 91.402 0 0 0 0 0.40738 1 21932 21932 0.79363 0 1 + 46664 21101 29389 29403 53882 53882 0.10301628184618039 VALVPGVLL 9 Unmodified _VALVPGVLL_ 0 0 0 REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|210|1|anti-sense REV__HERVL18-int_dup31|chr1:168264567-168270596:-|2.633611269672452|0.166927170624758|3.98|151.0|210|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7997741699219 2 440.796946 879.57934 -0.42874 -0.00018899 2.9001 0.0012783 2.4713 0.0010893 440.7997198785305 23.616 1.3254 27.346 27.02 28.345 3.7298 152 111 2 0 0 0 0.50015 1 2933 2933 0.6015 0 1 91524 + 46665 23905 29390 29404 53883 53883 0.1347332432201256 VALWRRLS 8 Unmodified _VALWRRLS_ 0 0 0 REV__ENST00000526878.5_1_11:460175-490579:+|nuORF REV__ENST00000526878.5_1_11:460175-490579:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 500.7875061035156 2 500.806168 999.597784 0.28778 0.00014412 -1.7261 -0.00086446 -1.4384 -0.00072034 500.80518325536974 54.389 0.73902 57.707 57.324 58.063 3.3187 61 36 2 0 0 0 0.82752 1 12273 12273 20.871 0.41758 1 157320 + 46666 20537 29391 29405 53884 53884 0.09796879016550974 VAMLSVLQLH 10 Unmodified _VAMLSVLQLH_ 0 0 0 L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|106|3|anti-sense L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|106|3|anti-sense L1MA2_dup1712|chr4:73169504-73171178:+|1.598534810621581|0.0324045098653873|5.62|151.0|106|3|anti-sense MSMS UPN48_class_I_Rep_1 5 555.820556640625 2 555.820627 1109.6267 NaN NaN NaN NaN NaN NaN NaN 95.693 1 99.305 98.805 99.805 3.6124 0 0 0 0.53105 1 23052 23052 3.5965 0.70727 1 46667 9343 29392 29406 53885 53885 0.07627235530685539 VANAIIHLF 9 Unmodified _VANAIIHLF_ 0 0 0 ENSG00000169442|ENST00000374213|CD52 ENSG00000169442|ENST00000374213|CD52 ENSG00000169442|ENST00000374213|CD52 MULTI-MSMS UPN48_class_I_Rep_1 5 499.2954406738281 2 499.295102 996.575651 0.24439 0.00012202 0.35681 0.00017815 0.6012 0.00030017 499.2951675333739 68.089 0.86156 71.54 71.191 72.052 3.4517 157 73 3 0 0 0 0.005134 4 15761 15690;15726;15761;15803 146.01 25.478 1 518750 46668 4421 29393 29407 53886;53887;53888;53889 53888 0.07722654548126684 VANAIIHLF 9 Unmodified _VANAIIHLF_ 0 0 0 ENSG00000169442|ENST00000374213|CD52 ENSG00000169442|ENST00000374213|CD52 ENSG00000169442|ENST00000374213|CD52 MULTI-MSMS UPN48_class_I_Rep_2 6 499.2952575683594 2 499.295102 996.575651 0.29894 0.00014926 0.3196 0.00015957 0.61854 0.00030883 499.29516205554825 67.877 0.72124 71.385 71.081 71.802 3.5083 120 64 3 0 0 0 0.0051447 3 15642 15564;15604;15642 131.3 21.668 1 529100 46669 4421 29393 29407 53890;53891;53892 53892 0.07722654548126684 VANAIIHLF 9 Unmodified _VANAIIHLF_ 0 0 0 ENSG00000169442|ENST00000374213|CD52 ENSG00000169442|ENST00000374213|CD52 ENSG00000169442|ENST00000374213|CD52 MULTI-MSMS UPN48_class_I_Rep_3 7 499.2948913574219 2 499.295102 996.575651 0.31395 0.00015675 0.27026 0.00013494 0.58421 0.00029169 499.2951063062988 67.849 0.86488 71.357 70.968 71.833 3.5077 196 79 3 0 0 0 0.0069768 5 15482 15439;15482;15519;15557;15598 117.6 26.815 1 441770 46670 4421 29393 29407 53893;53894;53895;53896;53897 53894 0.07722654548126684 VANGGRRL 8 Unmodified _VANGGRRL_ 0 0 0 nc|ENSG00000157992|Q53RY4-2|KRTCAP3;ENSG00000157992|ENST00000288873|KRTCAP3 nc|ENSG00000157992|Q53RY4-2|KRTCAP3 nc|ENSG00000157992|Q53RY4-2|KRTCAP3 MSMS UPN48_class_I_Rep_3 7 421.7514343261719 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 68.921 1 72.43 71.93 72.93 3.5094 0 0 0 0.40738 1 15838 15838 0.79363 0 1 46671 3784 29394 29408 53898 53898 0.06114873397223164 VANGLRNPV 9 Unmodified _VANGLRNPV_ 0 0 0 ENSG00000143512|ENST00000343410|HHIPL2;nc|ENSG00000182218|Q96JK4-2|HHIPL1;ENSG00000182218|ENST00000330710|HHIPL1 ENSG00000143512|ENST00000343410|HHIPL2;nc|ENSG00000182218|Q96JK4-2|HHIPL1 ENSG00000143512|ENST00000343410|HHIPL2 MULTI-MSMS UPN47_class_I_Rep_1 2 470.2719421386719 2 470.272158 938.529764 0.15831 7.4449E-05 -0.29163 -0.00013715 -0.13332 -6.2697E-05 470.2719540969789 83.281 0.68835 86.819 86.45 87.138 3.5386 125 72 2 0 0 0 0.48846 1 20749 20749 1.8442 0 1 257280 46672 3306;4941 29395 29409 53899 53899 0.058040093658974 VANSAFVER 9 Unmodified _VANSAFVER_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS UPN46_class_I_Rep_3 1 496.7618408203125 2 496.761623 991.508694 0.088546 4.3986E-05 -0.097835 -4.8601E-05 -0.0092893 -4.6146E-06 496.7614899078422 31.88 0.6884 31.88 31.604 32.292 0 106 49 3 0 0 0 0.0085073 3 5388 5352;5388;5434 70.929 34.422 1 174260 46673 1207;1424 29396 29410 53900;53901;53902 53901 0.012599992663808735 VAPARLQRP 9 Unmodified _VAPARLQRP_ 0 0 0 ENST00000361396.6_1_13:96295934-96296894:-|nuORF ENST00000361396.6_1_13:96295934-96296894:-|nuORF ENST00000361396.6_1_13:96295934-96296894:-|nuORF MSMS UPN47_class_I_Rep_2 3 504.3224182128906 2 504.309075 1006.6036 NaN NaN NaN NaN NaN NaN NaN 109.78 1 113.31 112.81 113.81 3.5307 0 0 0 0.28335 1 26746 26746 11.64 0 1 46674 6328 29397 29411 53903 53903 0.10055977528213589 VAPIARMF 8 Unmodified _VAPIARMF_ 0 0 0 nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP nc|ENSG00000126838|P20742-2|PZP nc|ENSG00000126838|P20742-2|PZP MSMS UPN47_class_I_Rep_2 3 452.75762939453125 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 20.977 1 24.384 23.884 24.884 3.4074 0 0 0 0.40738 1 2271 2271 0.79363 0 1 46675 2554 29398 29412 53904 53904 0.044433540962018014 VAPLQVKVQ 9 Unmodified _VAPLQVKVQ_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MSMS UPN46_class_I_Rep_3 1 491.30877685546875 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 110.06 1 110.06 109.56 110.56 0 0 0 0 0.38478 1 27085 27085 4.3292 0 1 46676 5336 29399 29413 53905 53905 0.11078923719605882 VAPVPTPPGRC 11 Unmodified _VAPVPTPPGRC_ 0 0 0 REV__ENST00000460195.1_1_3:25824527-25825583:+|nuORF REV__ENST00000460195.1_1_3:25824527-25825583:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.3907470703125 2 547.294776 1092.575 NaN NaN NaN NaN NaN NaN NaN 54.229 1 57.744 57.244 58.244 3.5143 0 0 0 0.38417 1 11461 11461 2.4985 0.19575 1 + 46677 22422 29400 29414 53906 53906 0.032414918367749124 VAQKLLIL 8 Unmodified _VAQKLLIL_ 0 0 0 L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|43|1|anti-sense L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|43|1|anti-sense L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|43|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 449.3273010253906 2 449.310221 896.605889 0.16367 7.3538E-05 3.6852 0.0016558 3.8488 0.0017293 449.3124613705563 108.4 0.086014 112.07 112.05 112.14 3.6751 7 5 2 0 0 0 0.82752 1 25657 25657 0.69038 0 1 595120 46678 13056 29401 29415 53907 53907 0.15345013213345737 VAQMQTQCPYL 11 Unmodified _VAQMQTQCPYL_ 0 0 0 ENSG00000185758|ENST00000541814|CLDN24 ENSG00000185758|ENST00000541814|CLDN24 ENSG00000185758|ENST00000541814|CLDN24 MSMS UPN48_class_I_Rep_2 6 641.3011474609375 2 641.301941 1280.58933 NaN NaN NaN NaN NaN NaN NaN 43.119 1 46.881 46.381 47.381 3.7617 0 0 0 0.38417 1 8065 8065 2.4985 0.65425 1 46679 5119 29402 29416 53908 53908 -0.03974223797240484 VAQMWFWLW 9 Unmodified _VAQMWFWLW_ 0 0 0 REV__L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|195|1|anti-sense REV__L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|195|1|anti-sense MSMS UPN47_class_I_Rep_1 2 633.8082885742188 2 633.810062 1265.60557 NaN NaN NaN NaN NaN NaN NaN 56.206 1 59.684 59.184 60.184 3.4785 0 0 0 0.39518 1 12818 12818 1.8442 0.19162 1 + 46680 25294 29403 29417 53909 53909 -0.016607297782002206 VAQVLPQLP 9 Unmodified _VAQVLPQLP_ 0 0 0 L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|110|1|anti-sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|110|1|anti-sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|110|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7955322265625 2 482.794935 963.575317 -0.12456 -6.0137E-05 0.83323 0.00040228 0.70867 0.00034214 482.79535534323685 23.729 0.12989 23.729 23.689 23.818 0 17 13 2 0 0 0 0.48643 1 3019 3019 2.0598 0 1 55199 46681 8574 29404 29418 53910 53910 0.09207234828284072 VARFIRQARCM 11 Unmodified _VARFIRQARCM_ 0 0 0 REV__L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|11|2|sense REV__L1MC1_dup4749|chr5:143294398-143294901:-|1.6781910610733586|0.0912410682451142|4.2|151.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 450.913330078125 3 450.913031 1349.71726 NaN NaN NaN NaN NaN NaN NaN 33.659 1 36.933 36.433 37.433 3.2748 0 0 0 0.38417 1 6026 6026 1.2148 0.20126 1 + 46682 26568 29405 29419 53911 53911 0.056393813072872945 VARIAPQRA 9 Unmodified _VARIAPQRA_ 0 0 0 nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A;ENSG00000107957|ENST00000369774|SH3PXD2A nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A MSMS UPN48_class_I_Rep_1 5 491.3082275390625 2 491.30125 980.587947 NaN NaN NaN NaN NaN NaN NaN 109.63 1 113.26 112.76 113.76 3.6321 0 0 0 0.38478 1 26628 26628 4.3292 0 1 46683 1847 29406 29420 53912 53912 0.09687691011174593 VARLGNGR 8 Unmodified _VARLGNGR_ 0 0 0 REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 421.7517395019531 2 421.751393 841.488233 0.030413 1.2827E-05 -0.093322 -3.9359E-05 -0.062909 -2.6532E-05 421.75128757832715 81.017 0.89459 84.504 84.187 85.082 3.4874 203 93 3 0 0 0 0.82752 1 20138 20138 0.69038 0 1 574670 + 46684 20856 29407 29421 53913 53913 0.061148733972345326 VARLQLFVP 9 Unmodified _VARLQLFVP_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 521.8218994140625 2 521.824027 1041.6335 0.41795 0.00021809 -3.7779 -0.0019714 -3.36 -0.0017533 521.82171986402 107.63 0.10538 111.3 111.27 111.37 3.6724 22 13 2 0 0 0 0.18929 1 26372 26372 21.747 1.293 1 1126700 46685 15543 29408 29422 53914 53914 0.11434916473558587 VARLQLFVP 9 Unmodified _VARLQLFVP_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 521.824027 1041.6335 0.22918 0.00011959 -2.9606 -0.0015449 -2.7314 -0.0014253 521.8221452833366 107.63 0.032585 111.17 111.15 111.18 3.5345 -0.083609 0.00036219 NaN 21.747 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1285200 46686 15543 29408 29422 0.11434916473558587 VARLQLFVP 9 Unmodified _VARLQLFVP_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 521.824027 1041.6335 0.27712 0.00014461 -3.2707 -0.0017067 -2.9935 -0.0015621 522.3241346866315 107.6 0.18127 111.23 111.12 111.3 3.6313 -0.016144 3.8573E-05 NaN 21.747 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2337200 46687 15543 29408 29422 0.11434916473558587 VARLQLFVP 9 Unmodified _VARLQLFVP_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 521.824027 1041.6335 0.3759 0.00019615 -2.997 -0.0015639 -2.6211 -0.0013678 521.8219040195387 107.63 0.10403 111.31 111.28 111.38 3.6783 0.063981 0.00032418 NaN 21.747 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2350000 46688 15543 29408 29422 0.11434916473558587 VARLQLFVP 9 Unmodified _VARLQLFVP_ 0 0 0 LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense LTR12C_dup2517|chr18:57641989-57644178:-|5.1622814605879705|0.2306903764862399|4.48|151.0|107|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 521.824027 1041.6335 0.4044 0.00021103 -3.3003 -0.0017222 -2.8959 -0.0015111 521.8220134059673 107.63 0.083679 111.31 111.28 111.36 3.6813 0.064077 7.6815E-06 NaN 21.747 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2259500 46689 15543 29408 29422 0.11434916473558587 VARMAMAETI 10 Unmodified _VARMAMAETI_ 0 0 0 HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|196|2|anti-sense HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|196|2|anti-sense HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|196|2|anti-sense MSMS UPN48_class_I_Rep_1 5 546.7830200195312 2 546.780644 1091.54674 NaN NaN NaN NaN NaN NaN NaN 38.04 1 41.545 41.045 42.045 3.5052 0 0 0 0.53105 1 6539 6539 1.4819 0.28856 1 46690 8286 29409 29423 53915 53915 0.004624258651801938 VARMLLMTCA 10 Unmodified _VARMLLMTCA_ 0 0 0 REV__ENST00000255078.7_1_11:68673703-68675675:+|nuORF REV__ENST00000255078.7_1_11:68673703-68675675:+|nuORF MSMS UPN46_class_I_Rep_3 1 555.2704467773438 2 554.787415 1107.56028 NaN NaN NaN NaN NaN NaN NaN 15.46 1 15.46 14.96 15.96 0 0 0 0 0.53105 1 886 886 0 0 1 + 46691 21532 29410 29424 53916 53916 0.010799603727946305 VARQQLHRPV 10 Unmodified _VARQQLHRPV_ 0 0 0 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 MSMS UPN48_class_I_Rep_1 5 602.35986328125 2 602.357088 1202.69962 NaN NaN NaN NaN NaN NaN NaN 95.211 1 98.827 98.327 99.327 3.6167 0 0 0 0.53105 1 22925 22925 1.4819 0.15237 1 46692 4822 29411 29425 53917 53917 0.10638125368313922 VARRYPNLFTN 11 Unmodified _VARRYPNLFTN_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-SECPEP UPN46_class_I_Rep_3 1 450.21575927734375 3 450.914083 1349.72042 0.089453 4.0336E-05 -0.20221 -9.118E-05 -0.11276 -5.0844E-05 450.91400218890783 37.315 0.31778 37.315 37.209 37.526 0 59 31 2 0 0 0 22.551 1 7004 7004 1.4551 1.4551 1 123780 46693 5107 29412 29426 53918 53918 0.059546709572941836 VARRYPNLFTN 11 Unmodified _VARRYPNLFTN_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN47_class_I_Rep_1 2 450.9136047363281 3 450.914083 1349.72042 -0.37696 -0.00016998 -0.193 -8.7026E-05 -0.56996 -0.000257 450.91396635229313 31.793 1.0771 35.522 35.173 36.25 3.7293 220 84 4 0 0 0 0.60101 4 5485 5368;5485;5527;5566 5.1984 2.5672 1 453730 46694 5107 29412 29426 53919;53920;53921;53922 53920 0.059546709572941836 VARRYPNLFTN 11 Unmodified _VARRYPNLFTN_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN47_class_I_Rep_2 3 450.913818359375 3 450.914083 1349.72042 -0.54844 -0.0002473 -0.086521 -3.9014E-05 -0.63496 -0.00028631 450.91399980578547 32.153 1.2593 35.621 35.212 36.471 3.4672 218 94 4 0 0 0 0.64611 6 5498 5498;5576;5618;5660;5710;5752 3.5927 0.96144 1 357130 46695 5107 29412 29426 53923;53924;53925;53926;53927;53928 53923 0.059546709572941836 VARRYPNLFTN 11 Unmodified _VARRYPNLFTN_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN47_class_I_Rep_3 4 450.91351318359375 3 450.914083 1349.72042 -0.82372 -0.00037143 0.11981 5.4023E-05 -0.70391 -0.0003174 450.91411454934956 32.349 1.2499 35.635 35.271 36.521 3.2867 237 97 3 0 0 0 0.60101 7 5797 5561;5602;5677;5758;5797;5834;5879 5.1984 3.5927 1 316690 46696 5107 29412 29426 53929;53930;53931;53932;53933;53934;53935 53933 0.059546709572941836 VARRYPNLFTN 11 Unmodified _VARRYPNLFTN_ 0 0 0 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 ENSG00000185522|ENST00000329451|LMNTD2 MULTI-MSMS UPN48_class_I_Rep_1 5 450.9138488769531 3 450.914083 1349.72042 0.067097 3.0255E-05 -0.63717 -0.00028731 -0.57008 -0.00025706 450.91377318783486 32.745 0.77957 36.271 35.879 36.659 3.5266 148 86 2 0 0 0 0.60101 2 4949 4949;5029 5.1984 1.0818 1 177430 46697 5107 29412 29426 53936;53937 53936 0.059546709572941836 VARSLALAL 9 Unmodified _VARSLALAL_ 0 0 0 nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN nc|ENSG00000102312|Q9H237-5|PORCN nc|ENSG00000102312|Q9H237-5|PORCN MULTI-MSMS UPN48_class_I_Rep_3 7 457.2951354980469 2 457.295102 912.575651 0.20079 9.1819E-05 -0.062197 -2.8442E-05 0.13859 6.3377E-05 457.294972898104 63.825 1.0612 67.334 66.721 67.782 3.5083 225 87 3 0 0 0 0.17897 1 14370 14370 22.736 0 1 1500600 46698 1609 29413 29427 53938 53938 0.11586654548113984 VASIGPKQ 8 Unmodified _VASIGPKQ_ 0 0 0 REV__LTR49-int_dup107|chr1:175924509-175926156:+|2.101371020610058|0.0529733476629321|5.31|151.0|8|1|sense REV__LTR49-int_dup107|chr1:175924509-175926156:+|2.101371020610058|0.0529733476629321|5.31|151.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 400.23785400390625 2 400.237253 798.459953 0.063988 2.561E-05 1.2662 0.0005068 1.3302 0.00053241 400.2376873736576 107.88 0.30702 107.88 107.81 108.12 0 39 23 4 0 0 0 0.82752 1 26307 26307 9.3474 0 1 35763000 + 46699 30940 29414 29428 53939 53939 0.052661306972822786 VASRRQLL 8 Unmodified _VASRRQLL_ 0 0 0 ENST00000424358.1_1_20:33865716-33865886:-|nuORF;ENST00000456350.5_1_20:33859939-33865883:-|nuORF ENST00000424358.1_1_20:33865716-33865886:-|nuORF ENST00000424358.1_1_20:33865716-33865886:-|nuORF MSMS UPN47_class_I_Rep_1 2 471.79534912109375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 60.758 1 64.14 63.64 64.64 3.3815 0 0 0 0.40581 1 14200 14200 2.8892 0 1 46700 6696 29415 29429 53940 53940 0.10392288636899139 VASRSNNFLD 10 Unmodified _VASRSNNFLD_ 0 0 0 REV__ENSG00000160877|ENST00000292431|NACC1 REV__ENSG00000160877|ENST00000292431|NACC1 MSMS UPN47_class_I_Rep_1 2 561.78125 2 561.780544 1121.54654 NaN NaN NaN NaN NaN NaN NaN 78.553 1 81.998 81.498 82.498 3.4456 0 0 0 0.53105 1 19534 19534 2.4985 0.43874 1 + 46701 19896 29416 29430 53941 53941 -0.009375345388207279 VASSIETLL 9 Unmodified _VASSIETLL_ 0 0 0 REV__nc|ENSG00000106608|Q8TCY9-3|URGCP REV__nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS UPN47_class_I_Rep_1 2 466.7684631347656 2 466.768583 931.522613 0.11843 5.5279E-05 -0.18943 -8.8419E-05 -0.070999 -3.314E-05 466.76838244912074 77.892 0.49144 81.321 81.056 81.548 3.4289 85 47 3 0 0 0 0.035561 1 19349 19349 54.774 0 1 343850 + 46702 18329 29417 29431 53942 53942 0.054112319748242044 VASSIETLL 9 Unmodified _VASSIETLL_ 0 0 0 REV__nc|ENSG00000106608|Q8TCY9-3|URGCP REV__nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS UPN47_class_I_Rep_2 3 466.7683410644531 2 466.768583 931.522613 0.064049 2.9896E-05 -0.21284 -9.9349E-05 -0.14879 -6.9453E-05 466.7683758535053 78.091 0.62029 81.433 81.071 81.691 3.3428 96 66 2 0 0 0 0.0081951 1 19394 19394 71.134 0 1 199450 + 46703 18329 29417 29431 53943 53943 0.054112319748242044 VASSIETLL 9 Unmodified _VASSIETLL_ 0 0 0 REV__nc|ENSG00000106608|Q8TCY9-3|URGCP REV__nc|ENSG00000106608|Q8TCY9-3|URGCP MSMS UPN47_class_I_Rep_2 3 466.76885986328125 2 466.768583 931.522613 NaN NaN NaN NaN NaN NaN NaN 78.225 1 81.568 81.068 82.068 3.3428 0 0 0 0.22485 1 19428 19428 14.838 0 1 + 46704 18329 29417 29431 53944 53944 0.054112319748242044 VASSIETLL 9 Unmodified _VASSIETLL_ 0 0 0 REV__nc|ENSG00000106608|Q8TCY9-3|URGCP REV__nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS UPN47_class_I_Rep_3 4 466.7679443359375 2 466.768583 931.522613 -0.037335 -1.7427E-05 -0.092781 -4.3307E-05 -0.13012 -6.0734E-05 466.7683678262935 78.085 0.79935 81.366 81.063 81.862 3.2816 137 85 3 0 0 0 0.082592 3 19434 19434;19474;19515 37.974 0 1 193950 + 46705 18329 29417 29431 53945;53946;53947 53945 0.054112319748242044 VASVRLPVS 9 Unmodified _VASVRLPVS_ 0 0 0 REV__ENSG00000031081|ENST00000264245|ARHGAP31 REV__ENSG00000031081|ENST00000264245|ARHGAP31 MSMS UPN48_class_I_Rep_1 5 464.2962341308594 2 464.284734 926.554916 NaN NaN NaN NaN NaN NaN NaN 107.53 1 111.16 110.66 111.66 3.6313 0 0 0 0.31276 1 25917 25917 10.074 1.4806 1 + 46706 17626 29418 29432 53948 53948 0.08870064168468161 VATHYGFN 8 Unmodified _VATHYGFN_ 0 0 0 L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|75|3|anti-sense L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|75|3|anti-sense L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|75|3|anti-sense MSMS UPN48_class_I_Rep_2 6 454.7171936035156 2 454.716685 907.418816 NaN NaN NaN NaN NaN NaN NaN 81.706 1 85.362 84.862 85.862 3.6567 0 0 0 0.40738 1 19400 19400 0.79363 0 1 46707 8902 29419 29433 53949 53949 -0.03859630342185483 VATNLDFQL 9 Unmodified _VATNLDFQL_ 0 0 0 REV__L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|285|2|anti-sense REV__L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|285|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.7715759277344 2 510.771657 1019.52876 0.16687 8.5233E-05 -0.14098 -7.2008E-05 0.025891 1.3225E-05 510.77153325544026 77.767 0.76114 81.11 80.776 81.537 3.3428 193 79 3 0 0 0 0.074399 1 19305 19305 39.95 0 1 578620 + 46708 29622 29420 29434 53950 53950 0.01977750206322071 VATNLDFQL 9 Unmodified _VATNLDFQL_ 0 0 0 REV__L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|285|2|anti-sense REV__L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|285|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.7715148925781 2 510.771657 1019.52876 0.28731 0.00014675 -0.27449 -0.0001402 0.012829 6.5526E-06 510.77145096419446 77.855 0.66341 81.137 80.797 81.46 3.2816 195 72 3 0 0 0 0.052902 1 19365 19365 47.749 0 1 607120 + 46709 29622 29420 29434 53951 53951 0.01977750206322071 VATPIAILL 9 Unmodified _VATPIAILL_ 0 0 0 REV__L1PB4_dup3033|chr7:43592942-43593834:-|1.0473300568878885|0.031176632919785|5.07|151.0|50|2|anti-sense REV__L1PB4_dup3033|chr7:43592942-43593834:-|1.0473300568878885|0.031176632919785|5.07|151.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 455.8021545410156 2 455.802229 909.589904 0.17669 8.0536E-05 -0.25649 -0.00011691 -0.079797 -3.6372E-05 455.8020288841406 95.592 0.18853 99.5 99.342 99.53 3.9084 59 25 3 0 0 0 0.11897 1 22642 22642 30.225 0 1 298890 + 46710 30585 29421 29435 53952 53952 0.13149306976424668 VATPLKLVEKL 11 Unmodified _VATPLKLVEKL_ 0 0 0 REV__ENST00000473113.1_1_2:25817997-25830150:-|nuORF REV__ENST00000473113.1_1_2:25817997-25830150:-|nuORF MSMS UPN48_class_I_Rep_2 6 404.2635192871094 3 404.26383 1209.76966 NaN NaN NaN NaN NaN NaN NaN 83.491 1 87.172 86.672 87.672 3.6814 0 0 0 0.38417 1 19843 19843 0.45452 0 1 + 46711 19264 29422 29436 53953 53953 0.1731656619356272 VATRGRFM 8 Unmodified _VATRGRFM_ 0 0 0 REV__ENSG00000134258|ENST00000369458|VTCN1 REV__ENSG00000134258|ENST00000369458|VTCN1 MSMS UPN48_class_I_Rep_3 7 469.3282775878906 2 469.255454 936.496355 NaN NaN NaN NaN NaN NaN NaN 12.214 1 15.745 15.245 16.245 3.531 0 0 0 0.40738 1 40 40 0.79363 0 1 + 46712 19091 29423 29437 53954 53954 0.025566843223487012 VATVHPHV 8 Unmodified _VATVHPHV_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS UPN47_class_I_Rep_3 4 430.2558288574219 2 430.24287 858.471186 -0.41222 -0.00017735 4.1689 0.0017936 3.7567 0.0016163 430.24311883268797 109.26 0.2536 112.8 112.68 112.94 3.5347 48 33 2 0 0 0 0.82752 1 26826 26826 2.5775 0 1 1165900 + 46713 17755 29424 29438 53955 53955 0.03628952791427764 VATVLSPLTL 10 Unmodified _VATVLSPLTL_ 0 0 0 L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 507.8182067871094 2 507.3157 1012.61685 0.21558 0.00010937 1.0517 0.00053354 1.2673 0.00064291 507.81829782755693 63.382 0.39214 66.742 66.574 66.966 3.3595 60 31 2 0 0 0 0.48573 2 14987 14987;15020 13.042 3.6593 1 120970 46714 12227 29425 29439 53956;53957 53956 0.11104370796954299 VATVLSPLTL 10 Unmodified _VATVLSPLTL_ 0 0 0 L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 507.3163146972656 2 507.3157 1012.61685 0.24052 0.00012202 1.1766 0.00059688 1.4171 0.0007189 507.8181471366918 63.802 0.58447 66.976 66.855 67.44 3.1741 89 45 3 0 0 0 0.48573 3 15276 15227;15276;15322 13.042 0 1 144180 46715 12227 29425 29439 53958;53959;53960 53959 0.11104370796954299 VATVLSPLTL 10 Unmodified _VATVLSPLTL_ 0 0 0 L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 507.3157 1012.61685 0.21558 0.00010937 1.0517 0.00053354 1.2673 0.00064291 507.81829782755693 63.382 0.39214 66.742 66.574 66.966 3.3595 -0.11693 -6.9767E-05 NaN 13.042 60 31 2 NaN NaN NaN NaN 0 NaN NaN 0 120970 46716 12227 29425 29439 0.11104370796954299 VATVLSPLTL 10 Unmodified _VATVLSPLTL_ 0 0 0 L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense L1ME1_dup1534|chr1:155445628-155445816:-|1.2347861484159444|0.0175846319724908|6.13|151.0|11|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 507.3157 1012.61685 0.24052 0.00012202 1.1766 0.00059688 1.4171 0.0007189 507.8181471366918 63.802 0.58447 66.976 66.855 67.44 3.1741 0.11693 5.6917E-05 NaN 13.042 89 45 3 NaN NaN NaN NaN 0 NaN NaN 0 144180 46717 12227 29425 29439 0.11104370796954299 VAVARTRW 8 Unmodified _VAVARTRW_ 0 0 0 REV__ENST00000412023.5_1_12:6993021-6993087:+|nuORF REV__ENST00000412023.5_1_12:6993021-6993087:+|nuORF MSMS UPN47_class_I_Rep_2 3 479.781982421875 2 479.782693 957.550834 NaN NaN NaN NaN NaN NaN NaN 36.699 1 40.098 39.598 40.598 3.3988 0 0 0 0.40604 1 6914 6914 2.5775 0 1 + 46718 22194 29426 29440 53961 53961 0.07036019465408572 VAVDERQAY 9 Unmodified _VAVDERQAY_ 0 0 0 REV__ENSG00000130477|ENST00000519716|UNC13A REV__ENSG00000130477|ENST00000519716|UNC13A MULTI-MSMS UPN47_class_I_Rep_1 2 525.7637939453125 2 525.764363 1049.51417 -0.12168 -6.3976E-05 -1.2129 -0.00063772 -1.3346 -0.0007017 525.7635162806937 31.469 0.47817 35.198 34.913 35.391 3.7293 38 33 2 0 0 0 0.45688 2 5272 5272;5276 4.756 0 1 59182 + 46719 18939 29427 29441 53962;53963 53962 -0.008603219418091612 VAVDERQAY 9 Unmodified _VAVDERQAY_ 0 0 0 REV__ENSG00000130477|ENST00000519716|UNC13A REV__ENSG00000130477|ENST00000519716|UNC13A MULTI-MATCH UPN47_class_I_Rep_2 3 2 525.764363 1049.51417 -0.2957 -0.00015547 -0.097152 -5.1079E-05 -0.39285 -0.00020655 525.7639830865843 31.445 0.050116 34.914 34.877 34.928 3.4691 -0.17819 0.00096406 NaN 4.756 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 28480 + 46720 18939 29427 29441 -0.008603219418091612 VAVGAKKKKK 10 Unmodified _VAVGAKKKKK_ 0 0 0 REV__L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|15|1|sense REV__L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 528.8662109375 2 528.866226 1055.7179 0.31117 0.00016457 0.013036 6.8941E-06 0.32421 0.00017146 528.8661624624888 108.14 0.35546 111.77 111.48 111.84 3.6313 87 30 4 0 0 0 0.56478 1 26082 26082 0.45834 0 1 12070000 + 46721 28878 29428 29442 53964 53964 0.19226867290308292 VAVGERAQK 9 Unmodified _VAVGERAQK_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN47_class_I_Rep_1 2 479.27728271484375 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.46869 1 18604 18604 3.9444 0 1 595600 46722 3825 29429 29443 53965 53965 0.06031992020314192 VAVGISGLLS 10 Unmodified _VAVGISGLLS_ 0 0 0 REV__ENSG00000179256|ENST00000316048|SMCO3 REV__ENSG00000179256|ENST00000316048|SMCO3 MULTI-SECPEP UPN47_class_I_Rep_2 3 457.79046630859375 2 458.279118 914.543683 0.004746 2.175E-06 0.165 7.5618E-05 0.16975 7.7793E-05 458.27904947649654 55.586 0.57378 58.897 58.605 59.179 3.3102 46 31 2 0 0 0 0.84575 1 12666 12666 10.074 0 1 106180 + 46723 20674 29430 29444 53966 53966 0.08299242074338053 VAVLWMDFF 9 Unmodified _VAVLWMDFF_ 0 0 0 L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|150|2|anti-sense L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|150|2|anti-sense L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|150|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 564.266845703125 2 564.283346 1126.55214 0.35555 0.00020063 1.3147 0.00074188 1.6703 0.00094251 564.2842917624735 69.989 0.054901 73.36 73.326 73.381 3.3713 8 5 2 0 0 0 0.12281 1 16982 16982 4.3292 0 1 42283 46724 13904 29431 29445 53967 53967 -0.0060752728070383455 VAVLWVVGL 9 Unmodified _VAVLWVVGL_ 0 0 0 REV__ENSG00000186867|ENST00000394427|QRFPR REV__ENSG00000186867|ENST00000394427|QRFPR MSMS UPN47_class_I_Rep_1 2 478.30059814453125 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 67.787 1 71.149 70.649 71.649 3.3611 0 0 0 0.3264 1 16323 16323 9.3474 0 1 + 46725 20909 29432 29446 53968 53968 0.11112726696285335 VAVLWVVGL 9 Unmodified _VAVLWVVGL_ 0 0 0 REV__ENSG00000186867|ENST00000394427|QRFPR REV__ENSG00000186867|ENST00000394427|QRFPR MSMS UPN47_class_I_Rep_1 2 478.3003234863281 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 68.066 1 71.431 70.931 71.931 3.3646 0 0 0 0.3264 1 16408 16408 9.3474 0 1 + 46726 20909 29432 29446 53969 53969 0.11112726696285335 VAVQRKIV 8 Unmodified _VAVQRKIV_ 0 0 0 REV__ENST00000585652.5_1_19:2109741-2111012:-|nuORF REV__ENST00000585652.5_1_19:2109741-2111012:-|nuORF MSMS UPN47_class_I_Rep_3 4 456.80328369140625 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 31.819 1 35.118 34.618 35.618 3.2991 0 0 0 0.40746 1 5473 5473 0.69038 0 1 + 46727 23142 29433 29447 53970 53970 0.1323036078504174 VAVRGRWL 8 Unmodified _VAVRGRWL_ 0 0 0 REV__L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|133|1|anti-sense REV__L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|133|1|anti-sense MSMS UPN47_class_I_Rep_3 4 478.79217529296875 2 478.793061 955.571569 NaN NaN NaN NaN NaN NaN NaN 59.484 1 62.649 62.149 63.149 3.1651 0 0 0 0.40625 1 13900 13900 2.3027 0 1 + 46728 29917 29434 29448 53971 53971 0.09200609845083818 VAVRQGGR 8 Unmodified _VAVRQGGR_ 0 0 0 ENST00000380880.3_1_9:14910266-14910341:-|nuORF ENST00000380880.3_1_9:14910266-14910341:-|nuORF ENST00000380880.3_1_9:14910266-14910341:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 421.7513427734375 2 421.751393 841.488233 -0.59154 -0.00024948 0.66221 0.00027929 0.07067 2.9805E-05 421.7515255277408 68.454 0.70886 71.723 71.507 72.216 3.2696 80 62 2 0 0 0 0.82752 1 16598 16598 0.79363 0 1 57892 46729 6492 29435 29449 53972 53972 0.06114873397245901 VAVRQGGR 8 Unmodified _VAVRQGGR_ 0 0 0 ENST00000380880.3_1_9:14910266-14910341:-|nuORF ENST00000380880.3_1_9:14910266-14910341:-|nuORF ENST00000380880.3_1_9:14910266-14910341:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 421.751393 841.488233 0.093244 3.9326E-05 0.13151 5.5463E-05 0.22475 9.4789E-05 421.75118688029755 67.854 0.23802 71.362 71.229 71.468 3.5083 -0.11706 -0.0003381 NaN 0.79363 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 75226 46730 6492 29435 29449 0.06114873397245901 VAVRQGGR 8 Unmodified _VAVRQGGR_ 0 0 0 ENST00000380880.3_1_9:14910266-14910341:-|nuORF ENST00000380880.3_1_9:14910266-14910341:-|nuORF ENST00000380880.3_1_9:14910266-14910341:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 421.751393 841.488233 0.16643 7.0194E-05 -0.28135 -0.00011866 -0.11491 -4.8464E-05 421.75111841450916 67.953 0.17302 71.461 71.31 71.483 3.5077 -0.018394 -0.00068634 NaN 0.79363 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 56908 46731 6492 29435 29449 0.06114873397245901 VAWGPMGVSR 10 Unmodified _VAWGPMGVSR_ 0 0 0 REV__MER52A_dup259|chr3:138767449-138769230:-|2.7641482361041168|0.0253892605404931|6.77|151.0|49|1|anti-sense REV__MER52A_dup259|chr3:138767449-138769230:-|2.7641482361041168|0.0253892605404931|6.77|151.0|49|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.315185546875 2 530.273844 1058.53313 NaN NaN NaN NaN NaN NaN NaN 35.833 1 39.521 39.021 40.021 3.6877 0 0 0 0.53105 1 5958 5958 1.8442 1.0506 1 + 46732 31419 29436 29450 53973 53973 0.0062093614826608245 VAYEVLSAFG 10 Unmodified _VAYEVLSAFG_ 0 0 0 REV__ENSG00000109738|ENST00000264428|GLRB REV__ENSG00000109738|ENST00000264428|GLRB MULTI-MSMS UPN47_class_I_Rep_1 2 528.27392578125 2 528.274032 1054.53351 0.40275 0.00021276 -0.14927 -7.8855E-05 0.25348 0.00013391 528.273855168659 85.77 0.95631 89.386 88.84 89.796 3.6153 291 124 3 0 0 0 0.23621 1 21349 21349 39.957 3.8303 1 1048800 + 46733 18411 29437 29451 53974 53974 0.008426343491009902 VAYEVLSAFG 10 Unmodified _VAYEVLSAFG_ 0 0 0 REV__ENSG00000109738|ENST00000264428|GLRB REV__ENSG00000109738|ENST00000264428|GLRB MULTI-MSMS UPN47_class_I_Rep_2 3 528.27392578125 2 528.274032 1054.53351 0.28967 0.00015302 -0.07485 -3.9542E-05 0.21482 0.00011348 528.2738895581243 85.691 0.94395 89.124 88.765 89.709 3.4329 337 124 4 0 0 0 0.21144 3 21298 21298;21328;21358 48.346 4.4876 1 1103800 + 46734 18411 29437 29451 53975;53976;53977 53975 0.008426343491009902 VAYEVLSAFG 10 Unmodified _VAYEVLSAFG_ 0 0 0 REV__ENSG00000109738|ENST00000264428|GLRB REV__ENSG00000109738|ENST00000264428|GLRB MULTI-MSMS UPN47_class_I_Rep_3 4 528.2741088867188 2 528.274032 1054.53351 0.41045 0.00021683 -0.20218 -0.00010681 0.20827 0.00011002 528.2738206000579 85.949 0.53673 89.32 89.212 89.748 3.3716 147 61 4 0 0 0 0.23621 2 21525 21525;21538 39.957 3.8303 1 1267400 + 46735 18411 29437 29451 53978;53979 53978 0.008426343491009902 VCAARRRRGG 10 Unmodified _VCAARRRRGG_ 0 0 0 ENST00000246024.6_1_20:8000232-8000430:-|nuORF ENST00000246024.6_1_20:8000232-8000430:-|nuORF ENST00000246024.6_1_20:8000232-8000430:-|nuORF MSMS UPN48_class_I_Rep_1 5 551.31298828125 2 551.312158 1100.60976 NaN NaN NaN NaN NaN NaN NaN 108.74 1 112.37 111.87 112.87 3.6321 0 0 0 0.53105 1 26338 26338 5.7319 0 1 46736 5910 29438 29452 53980 53980 0.06348172488083037 VCAQPFHYLW 10 Unmodified _VCAQPFHYLW_ 0 0 0 REV__L1MB7_dup4872|chr3:160421757-160423364:-|1.1051598690717102|0.1095821130137103|3.33|151.0|67|1|anti-sense REV__L1MB7_dup4872|chr3:160421757-160423364:-|1.1051598690717102|0.1095821130137103|3.33|151.0|67|1|anti-sense MSMS UPN48_class_I_Rep_3 7 632.303955078125 2 632.302601 1262.59065 NaN NaN NaN NaN NaN NaN NaN 36.341 1 40.008 39.508 40.508 3.6667 0 0 0 0.53105 1 6005 6005 1.6526 0 1 + 46737 26274 29439 29453 53981 53981 -0.030142216461854332 VCARGRAAPL 10 Unmodified _VCARGRAAPL_ 0 0 0 ENST00000366600.7_1_1:235658098-235667703:-|nuORF ENST00000366600.7_1_1:235658098-235667703:-|nuORF ENST00000366600.7_1_1:235658098-235667703:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 506.8529968261719 2 507.287285 1012.56002 0.27308 0.00013853 -1.6402 -0.00083206 -1.3671 -0.00069353 507.28630162593146 108.75 0.25057 112.42 112.29 112.54 3.6751 42 27 2 0 0 0 0.84575 1 25732 25732 6.7232 4.4204 1 6485400 46738 6336 29440 29454 53982 53982 0.05424044759422486 VCCADRRH 8 Unmodified _VCCADRRH_ 0 0 0 ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-3|GRN;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN ENST00000586443.1_1_17:42429890-42430163:+|nuORF ENST00000586443.1_1_17:42429890-42430163:+|nuORF MSMS UPN47_class_I_Rep_2 3 479.74969482421875 2 480.218546 958.422538 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.38 117.88 118.88 3.5039 0 0 0 0.40604 1 27989 27989 2.5775 0.51773 1 46739 835 29441 29455 53983 53983 -0.05833607111640049 VCCFFLVK 8 Unmodified _VCCFFLVK_ 0 0 0 REV__L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|343|3|anti-sense REV__L1PA5_dup5181|chr7:103016328-103022487:+|1.1344317086349678|0.0714496964701642|3.99|150.0|343|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.7494201660156 2 479.748085 957.481616 NaN NaN NaN NaN NaN NaN NaN 118.42 1 122.02 121.52 122.52 3.6036 0 0 0 0.40738 1 29383 29383 0.79363 0 1 + 46740 29737 29442 29456 53984 53984 0.0011747612999215562 VCCHHIYS 8 Unmodified _VCCHHIYS_ 0 0 0 L1MEf_dup10683|chr17:81016299-81017255:+|1.244251529654552|0.1015011493460015|3.62|151.0|31|3|sense L1MEf_dup10683|chr17:81016299-81017255:+|1.244251529654552|0.1015011493460015|3.62|151.0|31|3|sense L1MEf_dup10683|chr17:81016299-81017255:+|1.244251529654552|0.1015011493460015|3.62|151.0|31|3|sense MSMS UPN47_class_I_Rep_1 2 481.2791442871094 2 481.204573 960.394592 NaN NaN NaN NaN NaN NaN NaN 24.851 1 28.6 28.1 29.1 3.7495 0 0 0 0.40738 1 3319 3319 0.79363 0 1 46741 13234 29443 29457 53985 53985 -0.08718930091720267 VCDWEDSSDSC 11 Unmodified _VCDWEDSSDSC_ 0 0 0 REV__ENSG00000145244|ENST00000273857|CORIN REV__ENSG00000145244|ENST00000273857|CORIN MSMS UPN47_class_I_Rep_2 3 415.8055419921875 3 415.805999 1244.39617 NaN NaN NaN NaN NaN NaN NaN 111.43 1 114.95 114.45 115.45 3.5226 0 0 0 0.38417 1 27117 27117 0 0 1 + 46742 19509 29444 29458 53986 53986 -0.21625430374933785 VCFILWHHHC 10 Unmodified _VCFILWHHHC_ 0 0 0 REV__AluSx_dup89318|chr15:93000001-93000283:+|1.02180297039074|0.4424612627818756|1.21|151.0|19|3|anti-sense REV__AluSx_dup89318|chr15:93000001-93000283:+|1.02180297039074|0.4424612627818756|1.21|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_1 2 647.3217163085938 2 647.802245 1293.58994 NaN NaN NaN NaN NaN NaN NaN 14.751 1 18.226 17.726 18.726 3.475 0 0 0 0.53105 1 643 643 0 0 1 + 46743 17158 29445 29459 53987 53987 -0.04511339566852257 VCFKKKKLVII 11 Unmodified _VCFKKKKLVII_ 0 0 0 Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.2924499511719 3 440.292955 1317.85703 0.031141 1.3711E-05 -0.80278 -0.00035346 -0.77164 -0.00033975 440.29226395206626 55.454 1.6877 58.962 58.184 59.871 3.5082 396 116 4 0 0 0 0.68478 1 11708 11708 0.094841 0.094841 1 656270 46744 33245 29446 29460 53988 53988 0.21082068863483983 VCFKKKKLVII 11 Unmodified _VCFKKKKLVII_ 0 0 0 Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|116|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.626708984375 3 440.292955 1317.85703 0.077414 3.4085E-05 -1.0007 -0.00044058 -0.92324 -0.0004065 440.2922029404469 57.637 1.8919 61.131 60.162 62.054 3.4942 305 144 4 0 0 0 0.68478 1 12504 12504 0.094841 0 1 870610 46745 33245 29446 29460 53989 53989 0.21082068863483983 VCFLLRVKQ 9 Unmodified _VCFLLRVKQ_ 0 0 0 HAL1_dup4104|chr3:11502672-11503476:+|3.0336268517627256|0.0363014872918518|6.38|151.0|12|2|sense HAL1_dup4104|chr3:11502672-11503476:+|3.0336268517627256|0.0363014872918518|6.38|151.0|12|2|sense HAL1_dup4104|chr3:11502672-11503476:+|3.0336268517627256|0.0363014872918518|6.38|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 553.3311157226562 2 553.331162 1104.64777 NaN NaN NaN NaN NaN NaN NaN 44.571 1 48.266 47.766 48.766 3.6951 0 0 0 0.39428 1 9279 9279 2.0598 1.2661 1 46746 7886 29447 29461 53990 53990 0.09963245630206075 VCFWRLGLL 9 Unmodified _VCFWRLGLL_ 0 0 0 ENSG00000104689|ENST00000221132|TNFRSF10A ENSG00000104689|ENST00000221132|TNFRSF10A ENSG00000104689|ENST00000221132|TNFRSF10A MSMS UPN47_class_I_Rep_2 3 553.8135375976562 2 553.812605 1105.61066 NaN NaN NaN NaN NaN NaN NaN 38.73 1 42.108 41.608 42.608 3.3785 0 0 0 0.38478 1 7530 7530 4.3292 0.38484 1 46747 1696 29448 29462 53991 53991 0.06207574084442058 VCGWKIRRES 10 Unmodified _VCGWKIRRES_ 0 0 0 REV__ENST00000243389.7_1_5:150868782-150868956:+|nuORF REV__ENST00000243389.7_1_5:150868782-150868956:+|nuORF MSMS UPN48_class_I_Rep_3 7 617.332275390625 2 617.329682 1232.64481 NaN NaN NaN NaN NaN NaN NaN 46.886 1 50.522 50.022 51.022 3.6363 0 0 0 0.53105 1 9143 9143 1.4819 0 1 + 46748 21510 29449 29463 53992 53992 0.03779370505412771 VCHIWLLLC 9 Unmodified _VCHIWLLLC_ 0 0 0 L1MA3_dup8054|chr17:17339027-17340514:-|1.0199725552750492|0.0238156202309306|5.42|150.0|78|2|anti-sense;L1MA3_dup6446|chr11:66202783-66204075:+|2.743212250249203|0.0330110151399229|6.38|151.0|55|1|anti-sense;L1MA2_dup336|chr1:176124121-176126451:-|2.721335125696108|0.0896175319511121|4.92|151.0|104|1|anti-sense;L1MA2_dup1207|chr3:57265450-57267227:-|1.593144169590197|0.3325014730817244|2.26|151.0|104|3|anti-sense;L1MA3_dup7701|chr15:44349277-44351294:+|7.549845921841027|0.1492014457220858|5.66|151.0|118|3|anti-sense;L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|234|1|anti-sense;L1MA2_dup4199|chrX:79201422-79204570:+|1.4522021576738982|0.0107773512626438|7.07|151.0|197|3|anti-sense;L1MA1_dup882|chr3:174894625-174897831:+|1.1311377542314112|0.3345806313734131|1.76|144.0|196|3|anti-sense;L1MA1_dup553|chr3:15789827-15792852:+|36.308069655019935|0.0896306292781839|8.66|151.0|146|2|anti-sense;L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|122|3|anti-sense;L1M1_dup446|chr1:173775853-173778065:-|1.473330568110128|0.1157249979847715|3.67|151.0|99|1|anti-sense;L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|138|3|anti-sense;L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|363|3|anti-sense L1MA3_dup8054|chr17:17339027-17340514:-|1.0199725552750492|0.0238156202309306|5.42|150.0|78|2|anti-sense L1MA3_dup8054|chr17:17339027-17340514:-|1.0199725552750492|0.0238156202309306|5.42|150.0|78|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 549.7590942382812 2 550.293191 1098.57183 0.44425 0.00024447 1.4312 0.00078756 1.8754 0.001032 550.2939018103376 61.615 0.11182 64.874 64.791 64.903 3.2594 6 5 2 0 0 0 0.12422 1 14500 14500 2.3027 0 1 34993 46749 8486 29450 29464 53993 53993 0.026485254584258655 VCHWKTYR 8 Unmodified _VCHWKTYR_ 0 0 0 L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|13|1|sense L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|13|1|sense L1PA16_dup10511|chr12:10900031-10903483:+|1.9098371625602668|0.0753669457628743|4.66|150.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 546.7732543945312 2 546.774011 1091.53347 NaN NaN NaN NaN NaN NaN NaN 111.59 1 115.23 114.73 115.73 3.6326 0 0 0 0.40738 1 27071 27071 0.79363 0 1 46750 14016 29451 29465 53994 53994 -0.008636441319140431 VCIILVLFF 9 Unmodified _VCIILVLFF_ 0 0 0 REV__L1ME1_dup1296|chr1:111689136-111689678:-|1.1067031627186918|0.0177647317308234|5.96|151.0|27|2|anti-sense REV__L1ME1_dup1296|chr1:111689136-111689678:-|1.1067031627186918|0.0177647317308234|5.96|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_1 5 533.8245239257812 2 533.822107 1065.62966 NaN NaN NaN NaN NaN NaN NaN 54.338 1 57.852 57.352 58.352 3.5143 0 0 0 0.39326 1 11495 11495 2.3027 0 1 + 46751 27594 29452 29466 53995 53995 0.09947110655480174 VCIPVSRKW 9 Unmodified _VCIPVSRKW_ 0 0 0 MLT1J_dup12974|chr16:81477621-81478106:-|1.1187940407155723|0.0315276716050456|5.15|150.0|17|1|anti-sense MLT1J_dup12974|chr16:81477621-81478106:-|1.1187940407155723|0.0315276716050456|5.15|150.0|17|1|anti-sense MLT1J_dup12974|chr16:81477621-81478106:-|1.1187940407155723|0.0315276716050456|5.15|150.0|17|1|anti-sense MSMS UPN46_class_I_Rep_3 1 544.1636352539062 2 544.307687 1086.60082 NaN NaN NaN NaN NaN NaN NaN 37.864 1 37.864 37.364 38.364 0 0 0 0 0.39326 1 7161 7161 2.3027 0 1 46752 16456 29453 29467 53996 53996 0.06098386079042939 VCIYFWTLY 9 Unmodified _VCIYFWTLY_ 0 0 0 L1ME2_dup12678|chr22:40614787-40615677:-|1.3611089698850556|0.0087492599540531|7.28|151.0|39|1|anti-sense L1ME2_dup12678|chr22:40614787-40615677:-|1.3611089698850556|0.0087492599540531|7.28|151.0|39|1|anti-sense L1ME2_dup12678|chr22:40614787-40615677:-|1.3611089698850556|0.0087492599540531|7.28|151.0|39|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 604.2970581054688 2 604.296453 1206.57835 0.41492 0.00025073 2.3684 0.0014312 2.7833 0.001682 604.297819580733 46.422 0.20214 49.941 49.802 50.004 3.5192 12 11 2 0 0 0 0.41259 1 9055 9055 7.2892 0 1 69916 46753 12475 29454 29468 53997 53997 -0.016672581092052496 VCIYVCIYY 9 Unmodified _VCIYVCIYY_ 0 0 0 L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|52|1|sense L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|52|1|sense L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|52|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2706909179688 2 569.769214 1137.52388 -0.084256 -4.8007E-05 0.46414 0.00026445 0.37988 0.00021644 569.7693800476803 36.772 0.53782 40.019 39.675 40.213 3.247 53 36 2 0 0 0 0.44858 1 6949 6949 5.2307 0.47466 1 68444 46754 15345 29455 29469 53998 53998 -0.039385932522918665 VCIYVCIYY 9 Unmodified _VCIYVCIYY_ 0 0 0 L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|52|1|sense L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|52|1|sense L1PB4_dup6965|chr18:59340219-59344810:+|1.2348258235728713|0.0974743109428031|3.66|151.0|52|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 569.769214 1137.52388 -0.053689 -3.059E-05 3.3912 0.0019322 3.3375 0.0019016 569.7712364428137 36.546 0.10102 40.216 40.154 40.255 3.6692 0.14595 0.0036338 NaN 5.2307 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 33953 46755 15345 29455 29469 -0.039385932522918665 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MULTI-MSMS UPN46_class_I_Rep_3 1 597.3567504882812 2 597.356034 1192.69751 0.57508 0.00034353 -1.4256 -0.0008516 -0.85054 -0.00050807 597.8556127195611 86.895 0.28351 86.895 86.765 87.049 0 59 27 3 0 0 0 0.48846 1 20759 20759 1.8442 0 1 253820 46756 4621 29456 29470 53999 53999 0.10887373358855257 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MSMS UPN46_class_I_Rep_3 1 597.3568725585938 2 597.356034 1192.69751 NaN NaN NaN NaN NaN NaN NaN 86.516 1 86.516 86.016 87.016 0 0 0 0 0.39518 1 20682 20682 1.8442 0 1 46757 4621 29456 29470 54000 54000 0.10887373358855257 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MULTI-MSMS UPN47_class_I_Rep_3 4 597.3567504882812 2 597.356034 1192.69751 0.48341 0.00028877 -0.38976 -0.00023283 0.093649 5.5942E-05 597.3567711432186 84.002 0.21709 87.352 87.204 87.421 3.35 53 25 3 0 0 0 0.48846 1 21066 21066 1.8442 0 1 79638 46758 4621 29456 29470 54001 54001 0.10887373358855257 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MSMS UPN47_class_I_Rep_3 4 597.3572998046875 2 597.356034 1192.69751 NaN NaN NaN NaN NaN NaN NaN 81.918 1 85.241 84.741 85.741 3.3231 0 0 0 0.39518 1 20521 20521 1.8442 0 1 46759 4621 29456 29470 54002 54002 0.10887373358855257 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MULTI-MSMS UPN48_class_I_Rep_2 6 597.8562622070312 2 597.356034 1192.69751 0.48252 0.00028824 -0.92625 -0.0005533 -0.44373 -0.00026506 597.8561968757829 83.188 0.39263 86.869 86.649 87.042 3.6814 72 48 2 0 0 0 0.46869 1 19801 19801 3.9444 2.1002 1 93628 46760 4621 29456 29470 54003 54003 0.10887373358855257 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MSMS UPN48_class_I_Rep_2 6 597.3569946289062 2 597.356034 1192.69751 NaN NaN NaN NaN NaN NaN NaN 80.774 1 84.419 83.919 84.919 3.6446 0 0 0 0.39518 1 19165 19165 1.8442 0 1 46761 4621 29456 29470 54004 54004 0.10887373358855257 VCKKRFTRR 9 Unmodified _VCKKRFTRR_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MSMS UPN48_class_I_Rep_3 7 597.3571166992188 2 597.356034 1192.69751 NaN NaN NaN NaN NaN NaN NaN 77.444 1 81.046 80.546 81.546 3.6016 0 0 0 0.39518 1 18294 18294 1.8442 0 1 46762 4621 29456 29470 54005 54005 0.10887373358855257 VCKQRYFDV 9 Unmodified _VCKQRYFDV_ 0 0 0 L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|135|1|anti-sense L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|135|1|anti-sense L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|135|1|anti-sense MSMS UPN48_class_I_Rep_2 6 579.2940673828125 2 579.292233 1156.56991 NaN NaN NaN NaN NaN NaN NaN 41.038 1 44.789 44.289 45.289 3.7508 0 0 0 0.38639 1 7454 7454 3.9444 0.3479 1 46763 13861 29457 29471 54006 54006 -0.002108120258526469 VCLCMLPFLM 10 Unmodified _VCLCMLPFLM_ 0 0 0 REV__L1PA11_dup2884|chr11:4035856-4036801:-|1.423092395785832|0.0129692123601941|6.78|150.0|32|1|anti-sense REV__L1PA11_dup2884|chr11:4035856-4036801:-|1.423092395785832|0.0129692123601941|6.78|150.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 585.2830810546875 2 585.28312 1168.55169 NaN NaN NaN NaN NaN NaN NaN 16.562 1 16.562 16.062 17.062 0 0 0 0 0.53105 1 1159 1159 0 0 1 + 46764 29020 29458 29472 54007 54007 -0.025847295880794263 VCLFFHCY 8 Unmodified _VCLFFHCY_ 0 0 0 REV__L1ME3E_dup4183|chr18:47146249-47147040:+|1.0006118407869131|0.1156021084942457|3.11|151.0|45|3|anti-sense REV__L1ME3E_dup4183|chr18:47146249-47147040:+|1.0006118407869131|0.1156021084942457|3.11|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_3 7 516.2255859375 2 516.227516 1030.44048 NaN NaN NaN NaN NaN NaN NaN 47.722 1 51.356 50.856 51.856 3.6339 0 0 0 0.4032 1 9394 9394 6.3541 0 1 + 46765 28163 29459 29473 54008 54008 -0.07352284909507034 VCLSPVLHI 9 Unmodified _VCLSPVLHI_ 0 0 0 ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|120|2|anti-sense ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|120|2|anti-sense ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|120|2|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7815856933594 2 490.783513 979.552473 NaN NaN NaN NaN NaN NaN NaN 118.22 1 121.64 121.14 122.14 3.4238 0 0 0 0.39428 1 29153 29153 2.0598 0 1 46766 7766 29460 29474 54009 54009 0.06187892439152165 VCLVHVGF 8 Unmodified _VCLVHVGF_ 0 0 0 REV__L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|356|3|anti-sense REV__L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|356|3|anti-sense MSMS UPN47_class_I_Rep_1 2 437.2132873535156 2 437.236199 872.457844 NaN NaN NaN NaN NaN NaN NaN 50.465 1 54.094 53.594 54.594 3.6285 0 0 0 0.40738 1 11068 11068 0.79363 0 1 + 46767 29657 29461 29475 54010 54010 0.016513786878249448 VCLWMKKI 8 Unmodified _VCLWMKKI_ 0 0 0 REV__L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|27|1|sense REV__L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|27|1|sense MSMS UPN47_class_I_Rep_3 4 510.7901611328125 2 510.790284 1019.56601 NaN NaN NaN NaN NaN NaN NaN 37.182 1 40.429 39.929 40.929 3.247 0 0 0 0.40738 1 7100 7100 0.79363 0 1 + 46768 30402 29462 29476 54011 54011 0.057014269467345 VCPLHTAPLHA 11 Unmodified _VCPLHTAPLHA_ 0 0 0 REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|23|1|anti-sense REV__MER1A_dup1146|chr6:136663996-136664516:+|1.321149491843026|0.0947561333285807|3.8|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 579.8070068359375 2 579.808051 1157.60155 NaN NaN NaN NaN NaN NaN NaN 42.253 1 45.894 45.394 46.394 3.6415 0 0 0 0.38417 1 7721 7721 1.3295 0.5359 1 + 46769 31117 29463 29477 54012 54012 0.029051807280893627 VCPTCPMM 8 Unmodified _VCPTCPMM_ 0 0 0 ENST00000459919.1_1_1:151260729-151261748:+|nuORF;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687 ENST00000459919.1_1_1:151260729-151261748:+|nuORF ENST00000459919.1_1_1:151260729-151261748:+|nuORF MSMS UPN48_class_I_Rep_2 6 440.799560546875 2 441.173038 880.331523 NaN NaN NaN NaN NaN NaN NaN 94.125 1 97.901 97.401 98.401 3.7761 0 0 0 0.40738 1 22383 22383 0.79363 0 1 46770 3293 29464 29478 54013 54013 -0.11342955195630111 VCRYLLHHY 9 Unmodified _VCRYLLHHY_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-5|ATG2A;ENST00000461701.5_1_11:64681808-64684607:-|nuORF;ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-5|ATG2A nc|ENSG00000110046|Q2TAZ0-5|ATG2A MSMS UPN48_class_I_Rep_3 7 602.3092041015625 2 602.308218 1202.60188 NaN NaN NaN NaN NaN NaN NaN 41.52 1 45.166 44.666 45.666 3.6458 0 0 0 0.40038 1 7509 7509 0.6015 0 1 46771 1921 29465 29479 54014 54014 0.008686004479613985 VCTDWFKFY 9 Unmodified _VCTDWFKFY_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|248|2|anti-sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|248|2|anti-sense MSMS UPN47_class_I_Rep_2 3 604.7752685546875 2 604.775885 1207.53722 NaN NaN NaN NaN NaN NaN NaN 28.729 1 32.228 31.728 32.728 3.4986 0 0 0 0.39428 1 4499 4499 2.0598 0 1 + 46772 30119 29466 29480 54015 54015 -0.058250191486877156 VCVFYTNN 8 Unmodified _VCVFYTNN_ 0 0 0 REV__Tigger2b_Pri_dup1373|chr10:87947207-87947609:-|5.630360586607598|0.3371153037718251|4.06|151.0|28|3|anti-sense REV__Tigger2b_Pri_dup1373|chr10:87947207-87947609:-|5.630360586607598|0.3371153037718251|4.06|151.0|28|3|anti-sense MSMS UPN46_class_I_Rep_3 1 480.24261474609375 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 18.147 1 18.147 17.647 18.647 0 0 0 0 0.40738 1 1540 1540 0.79363 0 1 + 46773 32691 29467 29481 54016 54016 -0.059021232797022094 VCVLSIITHI 10 Unmodified _VCVLSIITHI_ 0 0 0 REV__nc|ENSG00000198838|Q15413-2|RYR3 REV__nc|ENSG00000198838|Q15413-2|RYR3 MULTI-SECPEP UPN47_class_I_Rep_1 2 549.78271484375 2 549.323002 1096.63145 0.26553 0.00014586 -0.1692 -9.2945E-05 0.096328 5.2915E-05 549.3229201732198 49.649 0.85215 53.308 53.04 53.892 3.6592 82 50 2 0 0 0 0.84575 1 10805 10805 10.824 0 1 115060 + 46774 21152 29468 29482 54017 54017 0.08700119673426343 VCVLWCVFVV 10 Unmodified _VCVLWCVFVV_ 0 0 0 L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|344|2|anti-sense L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|344|2|anti-sense L1PA4_dup7454|chrX:85058880-85065603:-|1.297017167083402|0.0564162575712453|4.52|151.0|344|2|anti-sense MSMS UPN48_class_I_Rep_1 5 583.807373046875 2 583.808674 1165.60279 NaN NaN NaN NaN NaN NaN NaN 94.359 1 97.98 97.48 98.48 3.6208 0 0 0 0.53105 1 22705 22705 1.8442 0 1 46775 14389 29469 29483 54018 54018 0.026616787726425173 VCVYTSVLF 9 Unmodified _VCVYTSVLF_ 0 0 0 L1MD2_dup7143|chr10:42806799-42807465:-|1.057345632148225|0.083792295557848|3.66|151.0|35|3|anti-sense L1MD2_dup7143|chr10:42806799-42807465:-|1.057345632148225|0.083792295557848|3.66|151.0|35|3|anti-sense L1MD2_dup7143|chr10:42806799-42807465:-|1.057345632148225|0.083792295557848|3.66|151.0|35|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7682495117188 2 515.767529 1029.5205 NaN NaN NaN NaN NaN NaN NaN 76.159 1 79.76 79.26 80.26 3.6011 0 0 0 0.38478 1 17978 17978 4.3292 0.38484 1 46776 12027 29470 29484 54019 54019 0.006924799653461378 VCWFWIKA 8 Unmodified _VCWFWIKA_ 0 0 0 MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|5|2|sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|5|2|sense MLT1H_dup9901|chr22:38744919-38745433:+|1.327620141325164|0.2724966185151025|2.28|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 526.3060302734375 2 526.772948 1051.53134 NaN NaN NaN NaN NaN NaN NaN 23.126 1 26.877 26.377 27.377 3.7507 0 0 0 0.40746 1 2478 2478 0.69038 0 1 46777 16434 29471 29485 54020 54020 0.0076392713028781145 VCWLFCPLI 9 Unmodified _VCWLFCPLI_ 0 0 0 L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|205|1|anti-sense;L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|351|3|anti-sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|205|1|anti-sense L1PA6_dup933|chr3:179038595-179044362:+|1.1024060273133989|0.0472987145091249|4.54|149.0|205|1|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3079833984375 2 547.282292 1092.55003 NaN NaN NaN NaN NaN NaN NaN 47.659 1 51.181 50.681 51.681 3.5219 0 0 0 0.381 1 9442 9442 5.2307 0 1 46778 14601 29472 29486 54021 54021 0.007457207098468643 VCYCLWIWN 9 Unmodified _VCYCLWIWN_ 0 0 0 L1M7_dup344|chr2:71648047-71649060:+|1.1904278863906472|0.0483915074315908|4.62|150.0|65|3|anti-sense L1M7_dup344|chr2:71648047-71649060:+|1.1904278863906472|0.0483915074315908|4.62|150.0|65|3|anti-sense L1M7_dup344|chr2:71648047-71649060:+|1.1904278863906472|0.0483915074315908|4.62|150.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 600.272705078125 2 600.272455 1198.53036 NaN NaN NaN NaN NaN NaN NaN 25.961 1 29.455 28.955 29.955 3.4945 0 0 0 0.40038 1 3685 3685 0.6015 0 1 46779 9238 29473 29487 54022 54022 -0.06096655300916609 VDALLLAPA 9 Unmodified _VDALLLAPA_ 0 0 0 REV__ENSG00000129152|ENST00000250003|MYOD1 REV__ENSG00000129152|ENST00000250003|MYOD1 MSMS UPN47_class_I_Rep_2 3 441.770751953125 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 55.955 1 59.266 58.766 59.766 3.3102 0 0 0 0.39326 1 12771 12771 2.3027 0 1 + 46780 18918 29474 29488 54023 54023 0.07671857045602337 VDALMSSVPKR 11 Unmodified _VDALMSSVPKR_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;ENST00000463054.1_1_13:96529939-96547453:-|nuORF ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MSMS UPN46_class_I_Rep_3 1 601.8316040039062 2 601.831723 1201.64889 NaN NaN NaN NaN NaN NaN NaN 75.343 1 75.343 74.843 75.843 0 0 0 0 0.38417 1 17513 17513 1.1933 0 1 46781 1620 29475 29489 54024 54024 0.056134152084496236 VDAVYEKNGY 10 Unmodified _VDAVYEKNGY_ 0 0 0 ENSG00000137745|ENST00000260302|MMP13 ENSG00000137745|ENST00000260302|MMP13 ENSG00000137745|ENST00000260302|MMP13 MULTI-MSMS UPN47_class_I_Rep_3 4 579.2763671875 2 579.277303 1156.54005 0.34065 0.00019733 -0.021738 -1.2592E-05 0.31892 0.00018474 579.277250430345 58.455 0.86735 61.62 61.362 62.23 3.1658 94 53 2 0 0 0 0.54822 1 13694 13694 5.7319 0 1 219000 46782 3034 29476 29490 54025 54025 -0.03195472490187967 VDCVCCMC 8 Unmodified _VDCVCCMC_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|90|3|sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|90|3|sense MSMS UPN46_class_I_Rep_3 1 438.1333312988281 2 438.133056 874.251558 NaN NaN NaN NaN NaN NaN NaN 55.117 1 55.117 54.617 55.617 0 0 0 0 0.40738 1 11971 11971 0.79363 0 1 + 46783 31508 29477 29491 54026 54026 -0.19059764861140138 VDDMPNALSAL 11 Oxidation (M) _VDDM(Oxidation (M))PNALSAL_ VDDM(1)PNALSAL VDDM(67)PNALSAL 0 0 1 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_1 5 581.2764892578125 2 581.276446 1160.53834 0.57594 0.00033478 -0.92236 -0.00053614 -0.34641 -0.00020136 581.2761542460466 60.664 0.58624 64.137 63.878 64.464 3.4737 65 44 2 0 0 0 0.10319 2 13477 13439;13477 67.081 34.775 1 342640 + 46784 5235 29478 29492 54027;54028 54028 161 -0.03550849570456194 VDDMPNALSAL 11 Oxidation (M) _VDDM(Oxidation (M))PNALSAL_ VDDM(1)PNALSAL VDDM(67)PNALSAL 0 0 1 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_2 6 581.2766723632812 2 581.276446 1160.53834 0.54844 0.00031879 -0.39451 -0.00022932 0.15392 8.9471E-05 581.2761976204581 60.587 0.32834 64.065 63.813 64.141 3.4785 37 28 2 0 0 0 0.10319 2 13406 13367;13406 67.081 28.905 1 311840 + 46785 5235 29478 29492 54029;54030 54030 161 -0.03550849570456194 VDDMPNALSAL 11 Oxidation (M) _VDDM(Oxidation (M))PNALSAL_ VDDM(1)PNALSAL VDDM(44)PNALSAL 0 0 1 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MSMS UPN48_class_I_Rep_2 6 581.2762451171875 2 581.276446 1160.53834 NaN NaN NaN NaN NaN NaN NaN 60.76 1 64.239 63.739 64.739 3.4785 0 0 0 0.00010805 1 13443 13443 44.392 19.401 1 + 46786 5235 29478 29492 54031 54031 161 -0.03550849570456194 VDDMPNALSAL 11 Oxidation (M) _VDDM(Oxidation (M))PNALSAL_ VDDM(1)PNALSAL VDDM(44)PNALSAL 0 0 1 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000487791.1_1_16:226802-227261:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN48_class_I_Rep_3 7 581.276611328125 2 581.276446 1160.53834 0.48293 0.00028072 -0.64406 -0.00037438 -0.16113 -9.3659E-05 581.2763712724586 60.49 0.50598 64.007 63.791 64.297 3.5169 80 49 2 0 0 0 0.16198 1 13322 13322 44.392 19.401 1 250830 + 46787 5235 29478 29492 54032 54032 161 -0.03550849570456194 VDEELHAP 8 Unmodified _VDEELHAP_ 0 0 0 REV__ENST00000485925.5_1_9:136321326-136321824:+|nuORF REV__ENST00000485925.5_1_9:136321326-136321824:+|nuORF MSMS UPN48_class_I_Rep_1 5 455.2205505371094 2 455.219257 908.423961 NaN NaN NaN NaN NaN NaN NaN 69.505 1 72.96 72.46 73.46 3.4548 0 0 0 0.40738 1 16129 16129 0.79363 0 1 + 46788 22602 29479 29493 54033 54033 -0.033913712702315024 VDEGVITMT 9 Unmodified _VDEGVITMT_ 0 0 0 REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|17|2|sense REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 482.73626708984375 2 482.736425 963.458298 NaN NaN NaN NaN NaN NaN NaN 36.006 1 39.682 39.182 40.182 3.6762 0 0 0 0.39518 1 6670 6670 1.8442 0 1 + 46789 26242 29480 29494 54034 54034 -0.024892911736401402 VDEINRHV 8 Unmodified _VDEINRHV_ 0 0 0 nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF nc|ENSG00000146414|Q149N8-2|SHPRH nc|ENSG00000146414|Q149N8-2|SHPRH MULTI-MSMS UPN48_class_I_Rep_1 5 491.2593078613281 2 491.259248 980.503943 0.26936 0.00013232 -1.1129 -0.0005467 -0.8435 -0.00041438 491.2586158720347 20.914 0.081329 24.46 24.407 24.488 3.5454 13 9 2 0 0 0 0.82752 1 1834 1834 2.5775 0.51773 1 26638 46790 3437 29481 29495 54035 54035 0.012911151236153273 VDEKARLIY 9 Unmodified _VDEKARLIY_ 0 0 0 ENSG00000171700|ENST00000395042|RGS19 ENSG00000171700|ENST00000395042|RGS19 ENSG00000171700|ENST00000395042|RGS19 MULTI-MSMS UPN47_class_I_Rep_1 2 553.8143310546875 2 553.813856 1105.61316 0.40142 0.00022231 -0.19564 -0.00010835 0.20578 0.00011397 553.8136857017986 57.326 0.82175 60.763 60.428 61.25 3.437 171 73 3 0 0 0 0.30034 1 13232 13232 13.906 0 1 499960 46791 4539 29482 29496 54036 54036 0.06457701023100526 VDEKQPWVY 9 Unmodified _VDEKQPWVY_ 0 0 0 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 MSMS UPN47_class_I_Rep_2 3 582.2916870117188 2 582.290214 1162.56587 NaN NaN NaN NaN NaN NaN NaN 51.44 1 54.779 54.279 55.279 3.3386 0 0 0 0.38784 1 11395 11395 3.5965 0 1 46792 5363 29483 29497 54037 54037 -0.00890578247913254 VDELAVRAI 9 Unmodified _VDELAVRAI_ 0 0 0 REV__ENSG00000127578|ENST00000319070|WFIKKN1 REV__ENSG00000127578|ENST00000319070|WFIKKN1 MSMS UPN47_class_I_Rep_1 2 493.2878723144531 2 493.287474 984.560395 NaN NaN NaN NaN NaN NaN NaN 55.569 1 59.048 58.548 59.548 3.4785 0 0 0 0.38784 1 12623 12623 3.5965 1.019 1 + 46793 18878 29484 29498 54038 54038 0.06749742960278127 VDETRGMRHH 10 Unmodified _VDETRGMRHH_ 0 0 0 AluJo_dup75385|chr20:50910666-50910953:-|1.0022405382008108|0.0936445177544982|3.42|151.0|21|3|anti-sense AluJo_dup75385|chr20:50910666-50910953:-|1.0022405382008108|0.0936445177544982|3.42|151.0|21|3|anti-sense AluJo_dup75385|chr20:50910666-50910953:-|1.0022405382008108|0.0936445177544982|3.42|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_3 4 619.29638671875 2 619.29637 1236.57819 NaN NaN NaN NaN NaN NaN NaN 59.701 1 62.866 62.366 63.366 3.1651 0 0 0 0.53105 1 13967 13967 1.3295 0.13619 1 46794 127 29485 29499 54039 54039 -0.030638650565151693 VDFADVLYQGN 11 Unmodified _VDFADVLYQGN_ 0 0 0 L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|73|1|anti-sense L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|73|1|anti-sense L1ME1_dup23346|chr12:131967715-131969301:-|1.13140186064693|0.0233159741662499|5.6|151.0|73|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 620.794189453125 2 620.79586 1239.57717 0.47607 0.00029554 -0.19152 -0.0001189 0.28455 0.00017665 620.7956833284298 77.314 0.696 80.645 80.383 81.079 3.3315 153 70 3 0 0 0 0.61292 1 19290 19290 4.897 4.897 1 214700 46795 12312 29486 29500 54040 54040 -0.033038009444453564 VDFAQKLVG 9 Unmodified _VDFAQKLVG_ 0 0 0 REV__ENST00000509197.1_1_2:233310049-233312046:+|nuORF REV__ENST00000509197.1_1_2:233310049-233312046:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.7768859863281 2 488.776742 975.538931 0.1272 6.2171E-05 -0.24503 -0.00011977 -0.11784 -5.7596E-05 488.7765120948708 71.361 0.6032 74.736 74.547 75.15 3.3751 70 48 2 0 0 0 0.38714 2 17392 17346;17392 8.7454 1.4562 1 115350 + 46796 22727 29487 29501 54041;54042 54042 0.05018357931567152 VDFAQKLVG 9 Unmodified _VDFAQKLVG_ 0 0 0 REV__ENST00000509197.1_1_2:233310049-233312046:+|nuORF REV__ENST00000509197.1_1_2:233310049-233312046:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 488.77667236328125 2 488.776742 975.538931 0.1847 9.0278E-05 -0.40562 -0.00019826 -0.22092 -0.00010798 488.7765162507918 71.669 0.67667 74.888 74.624 75.3 3.2188 77 54 2 0 0 0 0.36392 1 17598 17598 10.074 2.1638 1 127530 + 46797 22727 29487 29501 54043 54043 0.05018357931567152 VDFFLLFG 8 Unmodified _VDFFLLFG_ 0 0 0 REV__nc|ENSG00000115486|P38435-2|GGCX REV__nc|ENSG00000115486|P38435-2|GGCX MSMS UPN47_class_I_Rep_2 3 479.2578125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 24.478 1 27.943 27.443 28.443 3.4655 0 0 0 0.40738 1 3250 3250 0.79363 0 1 + 46798 18567 29488 29502 54044 54044 0.020764720169154316 VDFKFDDIL 9 Unmodified _VDFKFDDIL_ 0 0 0 REV__ENST00000555422.5_1_14:76165571-76198516:+|nuORF REV__ENST00000555422.5_1_14:76165571-76198516:+|nuORF MSMS UPN47_class_I_Rep_1 2 556.2844848632812 2 556.28714 1110.55973 NaN NaN NaN NaN NaN NaN NaN 60.221 1 63.62 63.12 64.12 3.3982 0 0 0 0.32573 1 14041 14041 9.3831 0 1 + 46799 18680 29489 29503 54045 54045 0.008869035205634646 VDFLKDVMN 9 Unmodified _VDFLKDVMN_ 0 0 0 REV__L1PA5_dup8995|chr12:100010760-100016815:+|1.105474032884794|0.1022182611460724|3.43|150.0|194|1|anti-sense REV__L1PA5_dup8995|chr12:100010760-100016815:+|1.105474032884794|0.1022182611460724|3.43|150.0|194|1|anti-sense MSMS UPN48_class_I_Rep_1 5 540.7737426757812 2 540.773342 1079.53213 NaN NaN NaN NaN NaN NaN NaN 51.944 1 55.467 54.967 55.967 3.5227 0 0 0 0.37476 1 10763 10763 6.7232 0 1 + 46800 29811 29490 29504 54046 54046 -0.004453230113085738 VDFNTHHWKLL 11 Unmodified _VDFNTHHWKLL_ 0 0 0 REV__L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|99|3|anti-sense REV__L1ME1_dup19288|chr10:27522189-27523611:-|1.0675509711449596|0.0976508783282488|3.45|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_2 6 470.7692565917969 3 470.582333 1408.72517 NaN NaN NaN NaN NaN NaN NaN 53.318 1 56.928 56.428 57.428 3.6098 0 0 0 0.38417 1 11163 11163 0.50596 0 1 + 46801 27654 29491 29505 54047 54047 0.037155551000751075 VDFRFTKL 8 Unmodified _VDFRFTKL_ 0 0 0 REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.062902531717513|0.3950341382787979|1.43|151.0|124|3|anti-sense REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.062902531717513|0.3950341382787979|1.43|151.0|124|3|anti-sense MSMS UPN48_class_I_Rep_1 5 513.28125 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 30.59 1 34.132 33.632 34.632 3.542 0 0 0 0.40404 1 4410 4410 5.2307 0 1 + 46802 30351 29492 29506 54048 54048 0.05926350685513171 VDFWRHYF 8 Unmodified _VDFWRHYF_ 0 0 0 REV__nc|ENSG00000188092|B7ZAQ6-3|GPR89A REV__nc|ENSG00000188092|B7ZAQ6-3|GPR89A MULTI-MSMS UPN48_class_I_Rep_3 7 585.27978515625 2 585.279983 1168.54541 0.54409 0.00031845 -1.679 -0.00098269 -1.1349 -0.00066424 585.2788467658531 76.359 0.40809 79.942 79.626 80.034 3.5831 61 46 2 0 0 0 0.82752 1 17987 17987 18.135 1.0221 1 186960 + 46803 18629 29493 29507 54049 54049 -0.0321170411705225 VDGEPLGRVSF 11 Unmodified _VDGEPLGRVSF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA;ENST00000355968.10_1_7:44836323-44838373:+|nuORF ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MULTI-MSMS UPN47_class_I_Rep_1 2 588.3071899414062 2 588.306395 1174.59824 0.32473 0.00019104 0.3357 0.0001975 0.66044 0.00038854 588.3066524551148 54.008 0.14844 57.536 57.448 57.596 3.5278 12 8 2 0 0 0 0.54441 1 12160 12160 6.6304 2.686 1 51203 46804 5293 29494 29508 54050 54050 0.01792209155087221 VDGEPLGRVSF 11 Unmodified _VDGEPLGRVSF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA;ENST00000355968.10_1_7:44836323-44838373:+|nuORF ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MSMS UPN47_class_I_Rep_1 2 588.3073120117188 2 588.306395 1174.59824 NaN NaN NaN NaN NaN NaN NaN 54.207 1 57.709 57.209 58.209 3.5014 0 0 0 0.38417 1 12209 12209 2.4985 0.65425 1 46805 5293 29494 29508 54051 54051 0.01792209155087221 VDGEPLGRVSF 11 Unmodified _VDGEPLGRVSF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA;ENST00000355968.10_1_7:44836323-44838373:+|nuORF ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MSMS UPN47_class_I_Rep_2 3 588.3067016601562 2 588.306395 1174.59824 NaN NaN NaN NaN NaN NaN NaN 54.21 1 57.529 57.029 58.029 3.3187 0 0 0 0.38417 1 12237 12237 4.5289 0.58447 1 46806 5293 29494 29508 54052 54052 0.01792209155087221 VDGEPLGRVSF 11 Unmodified _VDGEPLGRVSF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA;ENST00000355968.10_1_7:44836323-44838373:+|nuORF ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MSMS UPN47_class_I_Rep_3 4 588.3070068359375 2 588.306395 1174.59824 NaN NaN NaN NaN NaN NaN NaN 54.354 1 57.539 57.039 58.039 3.1856 0 0 0 0.38417 1 12335 12335 2.4985 0.65425 1 46807 5293 29494 29508 54053 54053 0.01792209155087221 VDGEPLGRVSF 11 Unmodified _VDGEPLGRVSF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA;ENST00000355968.10_1_7:44836323-44838373:+|nuORF ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MSMS UPN47_class_I_Rep_3 4 588.3079223632812 2 588.306395 1174.59824 NaN NaN NaN NaN NaN NaN NaN 54.441 1 57.627 57.127 58.127 3.1856 0 0 0 0.38417 1 12362 12362 2.4985 0.65425 1 46808 5293 29494 29508 54054 54054 0.01792209155087221 VDGKRCSAF 9 Unmodified _VDGKRCSAF_ 0 0 0 REV__ENST00000466612.5_1_3:127391868-127391925:+|nuORF REV__ENST00000466612.5_1_3:127391868-127391925:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 491.7421875 2 491.742376 981.4702 0.21197 0.00010423 -0.095553 -4.6988E-05 0.11641 5.7245E-05 491.74228592009206 40.621 1.756 44.363 43.409 45.165 3.7413 270 182 2 0 0 0 0.37599 1 7222 7222 9.3831 0.035688 1 293770 + 46809 18531 29495 29509 54055 54055 -0.021276296397900296 VDHFYIFG 8 Unmodified _VDHFYIFG_ 0 0 0 L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|91|3|anti-sense L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|91|3|anti-sense L1MB4_dup6143|chr11:130085601-130087077:-|2.9686309784980964|0.0264708985618444|6.81|151.0|91|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 499.74383544921875 2 499.242535 996.470518 -0.028223 -1.409E-05 0.40232 0.00020086 0.3741 0.00018677 499.243805864062 26.513 0.82018 26.513 26.212 27.032 0 155 68 3 0 0 0 0.82752 1 3813 3813 2.5775 0 1 82832 46810 10542 29496 29510 54056 54056 -0.027858866482802114 VDHKVRRS 8 Unmodified _VDHKVRRS_ 0 0 0 AluY_dup85309|chr16:30249981-30250246:+|1.6097500548635515|0.2005667232713325|3.0|150.0|1|1|sense;AluY_dup84956|chr16:22509126-22509391:-|1.5481139160796735|0.2052461357234055|2.92|150.0|1|1|sense;AluY_dup95222|chr19:3143839-3144144:+|1.0980280721028215|0.0020203040859057|9.09|151.0|5|2|sense;AluY_dup73298|chr12:123428132-123428435:-|2.1153709744514613|0.0326849445224137|6.02|151.0|5|2|sense;AluY_dup6134|chr1:167700368-167700684:+|1.1288299223814038|0.0535105749742959|4.4|151.0|2|1|sense;AluY_dup56624|chrX:74252276-74252577:+|1.3557838646846356|0.1003603448292893|3.76|151.0|5|2|sense;AluY_dup32498|chr5:138426293-138426595:+|1.3202578073707396|0.4242467902552339|1.64|151.0|5|2|sense;AluY_dup17374|chr3:15776994-15777301:+|2.6851697133845747|0.0122014572588756|7.78|151.0|6|2|sense;AluSc8_dup593|chr1:44503852-44504147:-|1.7651516573124486|0.0011239752242852|10.62|150.0|5|2|sense;AluSc8_dup592|chr1:44484863-44485153:+|3.811362162394765|0.0001844986367165|14.33|151.0|2|1|sense;AluSc8_dup5619|chr4:139161824-139162103:+|1.0876543831463088|0.0172740339220015|5.98|151.0|8|3|sense;AluSc8_dup2315|chr2:68181108-68181410:+|1.0905794871436938|0.2832900318461125|1.94|151.0|5|2|sense AluY_dup85309|chr16:30249981-30250246:+|1.6097500548635515|0.2005667232713325|3.0|150.0|1|1|sense AluY_dup85309|chr16:30249981-30250246:+|1.6097500548635515|0.2005667232713325|3.0|150.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 498.8038330078125 2 498.788507 995.562461 NaN NaN NaN NaN NaN NaN NaN 48.876 1 52.535 52.035 53.035 3.6592 0 0 0 0.40527 1 10584 10584 3.5965 0.70727 1 46811 212 29497 29511 54057 54057 0.06450216488758542 VDHVIVTEI 9 Unmodified _VDHVIVTEI_ 0 0 0 ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.78759765625 2 512.787307 1023.56006 0.22841 0.00011713 -1.4496 -0.00074334 -1.2212 -0.00062621 513.2876450245152 65.004 0.18946 68.36 68.261 68.45 3.3557 23 14 2 0 0 0 0.41259 1 15482 15482 7.2892 0 1 60173 46812 6191 29498 29512 54058 54058 0.04922323240418791 VDHVIVTEI 9 Unmodified _VDHVIVTEI_ 0 0 0 ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF MSMS UPN47_class_I_Rep_1 2 512.78759765625 2 512.787307 1023.56006 NaN NaN NaN NaN NaN NaN NaN 65.163 1 68.519 68.019 69.019 3.3557 0 0 0 0.38639 1 15524 15524 3.9444 0 1 46813 6191 29498 29512 54059 54059 0.04922323240418791 VDHVIVTEI 9 Unmodified _VDHVIVTEI_ 0 0 0 ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF MSMS UPN47_class_I_Rep_1 2 512.7869262695312 2 512.787307 1023.56006 NaN NaN NaN NaN NaN NaN NaN 65.234 1 68.589 68.089 69.089 3.3557 0 0 0 0.38639 1 15546 15546 3.9444 0 1 46814 6191 29498 29512 54060 54060 0.04922323240418791 VDHVIVTEI 9 Unmodified _VDHVIVTEI_ 0 0 0 ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF ENST00000331585.6_1_2:196447906-196448179:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 512.7869873046875 2 512.787307 1023.56006 0.044193 2.2662E-05 -0.93515 -0.00047953 -0.89095 -0.00045687 513.2880164648719 65.348 0.55444 68.604 68.358 68.913 3.2556 54 40 2 0 0 0 0.20276 1 15619 15619 20.454 0 1 64012 46815 6191 29498 29512 54061 54061 0.04922323240418791 VDIKQNKI 8 Unmodified _VDIKQNKI_ 0 0 0 REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|47|2|sense REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|47|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.29022216796875 2 479.290017 956.565481 -0.34499 -0.00016535 0.076945 3.6879E-05 -0.26804 -0.00012847 479.2901649217798 23.917 0.55603 27.647 27.456 28.012 3.7298 60 45 2 0 0 0 0.82752 1 3056 3056 13.508 0 1 82325 + 46816 30497 29499 29513 54062 54062 0.0854604682289164 VDIKQNKI 8 Unmodified _VDIKQNKI_ 0 0 0 REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|47|2|sense REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|47|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.28973388671875 2 479.290017 956.565481 -0.23219 -0.00011129 -0.14727 -7.0583E-05 -0.37946 -0.00018187 479.28994833814085 24.236 0.58774 27.701 27.382 27.97 3.4655 69 51 2 0 0 0 0.82752 1 3207 3207 2.5775 0 1 51733 + 46817 30497 29499 29513 54063 54063 0.0854604682289164 VDIKQNKI 8 Unmodified _VDIKQNKI_ 0 0 0 REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|47|2|sense REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|47|2|sense MSMS UPN47_class_I_Rep_3 4 479.28973388671875 2 479.290017 956.565481 NaN NaN NaN NaN NaN NaN NaN 24.393 1 27.744 27.244 28.244 3.3509 0 0 0 0.39819 1 3266 3266 8.5933 0 1 + 46818 30497 29499 29513 54064 54064 0.0854604682289164 VDILFFIK 8 Unmodified _VDILFFIK_ 0 0 0 L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|74|3|anti-sense L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|74|3|anti-sense L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_3 7 497.8009338378906 2 497.802229 993.589904 NaN NaN NaN NaN NaN NaN NaN 35.671 1 39.338 38.838 39.838 3.6667 0 0 0 0.40404 1 5814 5814 5.2307 0 1 46819 11482 29500 29514 54065 54065 0.09285306976414631 VDINISICLR 10 Unmodified _VDINISICLR_ 0 0 0 L1MB7_dup6864|chr5:138569329-138569643:+|1.224193517418534|0.1766565569897982|2.79|151.0|18|2|anti-sense L1MB7_dup6864|chr5:138569329-138569643:+|1.224193517418534|0.1766565569897982|2.79|151.0|18|2|anti-sense L1MB7_dup6864|chr5:138569329-138569643:+|1.224193517418534|0.1766565569897982|2.79|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_3 7 573.3219604492188 2 573.320991 1144.62743 NaN NaN NaN NaN NaN NaN NaN 51.586 1 55.196 54.696 55.696 3.6105 0 0 0 0.53105 1 10587 10587 9.3831 4.4861 1 46820 10865 29501 29515 54066 54066 0.06090030179711903 VDISIPGRY 9 Unmodified _VDISIPGRY_ 0 0 0 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 MSMS UPN48_class_I_Rep_1 5 510.2803955078125 2 510.279649 1018.54475 NaN NaN NaN NaN NaN NaN NaN 62.786 1 66.248 65.748 66.748 3.4625 0 0 0 0.38784 1 14080 14080 3.5965 0 1 46821 5074 29502 29516 54067 54067 0.036214564432498264 VDKITKAVEM 10 Unmodified _VDKITKAVEM_ 0 0 0 REV__ENSG00000170385|ENST00000367001|SLC30A1 REV__ENSG00000170385|ENST00000367001|SLC30A1 MSMS UPN48_class_I_Rep_1 5 567.2955932617188 2 567.315374 1132.6162 NaN NaN NaN NaN NaN NaN NaN 52.622 1 56.141 55.641 56.641 3.5192 0 0 0 0.53105 1 10961 10961 6.7232 0.99131 1 + 46822 20360 29503 29517 54068 54068 0.055192080855931636 VDKNFLVP 8 Unmodified _VDKNFLVP_ 0 0 0 REV__HSMAR1_dup240|chr6:17658427-17659427:+|2.4334350034558656|0.1968638022818383|3.63|151.0|22|3|sense REV__HSMAR1_dup240|chr6:17658427-17659427:+|2.4334350034558656|0.1968638022818383|3.63|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 466.26556396484375 2 466.26601 930.517468 0.070261 3.276E-05 -0.76883 -0.00035848 -0.69857 -0.00032572 466.26557142159595 56.184 0.67262 59.663 59.294 59.967 3.4785 58 35 2 0 0 0 0.82752 1 12811 12811 9.3474 0 1 111720 + 46823 23956 29504 29518 54069 54069 0.04942972902847487 VDKNFLVP 8 Unmodified _VDKNFLVP_ 0 0 0 REV__HSMAR1_dup240|chr6:17658427-17659427:+|2.4334350034558656|0.1968638022818383|3.63|151.0|22|3|sense REV__HSMAR1_dup240|chr6:17658427-17659427:+|2.4334350034558656|0.1968638022818383|3.63|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 466.26544189453125 2 466.26601 930.517468 0.093925 4.3794E-05 -0.61259 -0.00028563 -0.51867 -0.00024184 466.26558154306156 56.371 0.628 59.672 59.437 60.065 3.3009 58 38 2 0 0 0 0.82752 1 12901 12901 5.2307 0 1 143590 + 46824 23956 29504 29518 54070 54070 0.04942972902847487 VDKNFLVP 8 Unmodified _VDKNFLVP_ 0 0 0 REV__HSMAR1_dup240|chr6:17658427-17659427:+|2.4334350034558656|0.1968638022818383|3.63|151.0|22|3|sense REV__HSMAR1_dup240|chr6:17658427-17659427:+|2.4334350034558656|0.1968638022818383|3.63|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 466.2657470703125 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 56.311 1 59.844 59.344 60.344 3.5333 0 0 0 0.40404 1 12082 12082 5.2307 0 1 + 46825 23956 29504 29518 54071 54071 0.04942972902847487 VDKRLDVL 8 Unmodified _VDKRLDVL_ 0 0 0 L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|51|1|anti-sense L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|51|1|anti-sense L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|51|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.2897033691406 2 479.290017 956.565481 -0.23219 -0.00011129 -0.14727 -7.0583E-05 -0.37946 -0.00018187 479.28994833814085 24.236 0.58774 27.701 27.382 27.97 3.4655 69 51 2 0 0 0 0.82752 2 3134 3134;3173 7.2892 0.56607 1 51733 46826 13571 29505 29519 54072;54073 54072 0.0854604682289164 VDKRLDVL 8 Unmodified _VDKRLDVL_ 0 0 0 L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|51|1|anti-sense L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|51|1|anti-sense L1PA10_dup1056|chr3:28271362-28272676:-|1.4669531193008216|0.0297831520565389|5.62|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 479.2901306152344 2 479.290017 956.565481 NaN NaN NaN NaN NaN NaN NaN 24.268 1 27.619 27.119 28.119 3.3509 0 0 0 0.40472 1 3228 3228 4.3292 0.38484 1 46827 13571 29505 29519 54074 54074 0.0854604682289164 VDLESHTL 8 Unmodified _VDLESHTL_ 0 0 0 REV__ENSG00000105707|ENST00000672452|HPN REV__ENSG00000105707|ENST00000672452|HPN MULTI-MSMS UPN47_class_I_Rep_2 3 457.23492431640625 2 457.234907 912.455261 -0.47881 -0.00021893 0.31505 0.00014405 -0.16376 -7.4878E-05 457.2349568755481 36.407 0.94969 39.818 39.492 40.442 3.4114 153 71 3 0 0 0 0.82752 1 6945 6945 4.756 0 1 439550 + 46828 18305 29506 29520 54075 54075 -0.004467982361234135 VDLETLHHGL 10 Unmodified _VDLETLHHGL_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MSMS UPN47_class_I_Rep_3 4 567.3014526367188 2 567.301113 1132.58767 NaN NaN NaN NaN NaN NaN NaN 37.428 1 40.675 40.175 41.175 3.247 0 0 0 0.53105 1 7176 7176 1.4819 0.15237 1 + 46829 19566 29507 29521 54076 54076 0.026682265006684247 VDLFLENRRY 10 Unmodified _VDLFLENRRY_ 0 0 0 REV__ENST00000468048.5_1_3:183898306-183899072:+|nuORF REV__ENST00000468048.5_1_3:183898306-183899072:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 442.5991516113281 3 442.238455 1323.69353 0.073047 3.2304E-05 -0.55965 -0.0002475 -0.4866 -0.0002152 442.2382421591471 47.549 0.25613 51.183 51.11 51.367 3.6339 30 21 2 0 0 0 0.84575 1 9374 9374 1.5923 0 1 112460 + 46830 19904 29508 29522 54077 54077 0.044635623461317664 VDLLCLFKY 9 Unmodified _VDLLCLFKY_ 0 0 0 REV__L1MEg_dup2460|chr2:233364118-233365232:+|1.8748588563917383|0.01839351248224|6.67|151.0|42|1|anti-sense REV__L1MEg_dup2460|chr2:233364118-233365232:+|1.8748588563917383|0.01839351248224|6.67|151.0|42|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.3063354492188 2 557.304278 1112.594 NaN NaN NaN NaN NaN NaN NaN 50.778 1 50.778 50.278 51.278 0 0 0 0 0.38639 1 10748 10748 3.9444 0 1 + 46831 28741 29509 29523 54078 54078 0.04221028407823724 VDLSTRCLL 9 Unmodified _VDLSTRCLL_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MSMS UPN48_class_I_Rep_3 7 510.28009033203125 2 510.281334 1018.54812 NaN NaN NaN NaN NaN NaN NaN 62.541 1 66.052 65.552 66.552 3.5104 0 0 0 0.31276 1 13909 13909 10.074 2.7847 1 + 46832 20278 29510 29524 54079 54079 0.039583832255971174 VDLVRPAL 8 Unmodified _VDLVRPAL_ 0 0 0 REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF MSMS UPN46_class_I_Rep_3 1 441.7878112792969 2 441.774003 881.533452 NaN NaN NaN NaN NaN NaN NaN 45.075 1 45.075 44.575 45.575 0 0 0 0 0.40404 1 9132 9132 5.2307 0 1 + 46833 21879 29511 29525 54080 54080 0.08794679139748496 VDMLLIFVCCF 11 Unmodified _VDMLLIFVCCF_ 0 0 0 L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|202|3|anti-sense L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|202|3|anti-sense L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|202|3|anti-sense MSMS UPN46_class_I_Rep_3 1 434.8823547363281 3 434.881346 1301.62221 NaN NaN NaN NaN NaN NaN NaN 62.739 1 62.739 62.239 63.239 0 0 0 0 0.38417 1 14045 14045 0.45452 0.1855 1 46834 9269 29512 29526 54081 54081 -0.01653732998738633 VDMLLIFVCCF 11 Unmodified _VDMLLIFVCCF_ 0 0 0 L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|202|3|anti-sense L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|202|3|anti-sense L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|202|3|anti-sense MSMS UPN48_class_I_Rep_1 5 434.8824768066406 3 434.881346 1301.62221 NaN NaN NaN NaN NaN NaN NaN 36.181 1 39.692 39.192 40.192 3.5101 0 0 0 0.38417 1 6013 6013 1.3296 0.31607 1 46835 9269 29512 29526 54082 54082 -0.01653732998738633 VDMRIPMFHY 10 Unmodified _VDMRIPMFHY_ 0 0 0 REV__L1MB3_dup6866|chr7:99016296-99017156:-|1.2562770200700262|0.1667090130072917|2.91|151.0|30|3|sense REV__L1MB3_dup6866|chr7:99016296-99017156:-|1.2562770200700262|0.1667090130072917|2.91|151.0|30|3|sense MSMS UPN47_class_I_Rep_2 3 436.8795166015625 3 436.879104 1307.61548 NaN NaN NaN NaN NaN NaN NaN 17.414 1 20.801 20.301 21.301 3.387 0 0 0 0.53105 1 1298 1298 1.5923 0.37745 1 + 46836 25908 29513 29527 54083 54083 -0.026019098350843706 VDMSELTSL 9 Unmodified _VDMSELTSL_ 0 0 0 REV__MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|41|2|anti-sense REV__MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.7425537109375 2 497.741708 993.468863 0.17927 8.9228E-05 1.2283 0.00061137 1.4075 0.00070059 497.7417295670791 58.458 0.31737 61.876 61.693 62.01 3.4171 25 20 2 0 0 0 0.46869 1 13489 13489 3.9444 0 1 58403 + 46837 31166 29514 29528 54084 54084 -0.02813308519205293 VDMSELTSL 9 Unmodified _VDMSELTSL_ 0 0 0 REV__MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|41|2|anti-sense REV__MER20B_dup3845|chr20:1136451-1137196:-|1.8315630823904232|0.0861956680204062|4.41|151.0|41|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.7420959472656 2 497.741708 993.468863 0.3163 0.00015744 0.77068 0.0003836 1.087 0.00054104 497.74175894250936 58.706 0.33623 61.988 61.745 62.081 3.2818 24 19 2 0 0 0 0.36392 1 13604 13604 10.074 0 1 64972 + 46838 31166 29514 29528 54085 54085 -0.02813308519205293 VDNLFKALPK 10 Unmodified _VDNLFKALPK_ 0 0 0 REV__ENSG00000123561|ENST00000372563|SERPINA7 REV__ENSG00000123561|ENST00000372563|SERPINA7 MULTI-SECPEP UPN48_class_I_Rep_3 7 572.3392333984375 2 572.839874 1143.66519 0.50332 0.00028832 -1.0125 -0.00057998 -0.50916 -0.00029167 573.341646167337 65.126 0.18426 68.634 68.583 68.767 3.5077 14 11 2 0 0 0 0.84575 1 14679 14679 4.897 0 1 93520 + 46839 18783 29515 29529 54086 54086 0.09910864436847078 VDNLQHLYN 9 Unmodified _VDNLQHLYN_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH MSMS UPN47_class_I_Rep_1 2 558.2939453125 2 558.277638 1114.54072 NaN NaN NaN NaN NaN NaN NaN 77.383 1 80.812 80.312 81.312 3.4289 0 0 0 0.39036 1 19198 19198 2.9952 0 1 46840 756 29516 29530 54087 54087 -0.01196633050494711 VDPIPKTL 8 Unmodified _VDPIPKTL_ 0 0 0 REV__nc|ENSG00000100170|P13866-2|SLC5A1 REV__nc|ENSG00000100170|P13866-2|SLC5A1 MSMS UPN48_class_I_Rep_2 6 441.7676086425781 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 60.512 1 63.991 63.491 64.491 3.4785 0 0 0 0.367 1 13369 13369 18.146 0 1 + 46841 18093 29517 29531 54088 54088 0.07671857045625075 VDPKKPGFV 9 Unmodified _VDPKKPGFV_ 0 0 0 L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|8|1|sense L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|8|1|sense L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 493.7877502441406 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 52.861 1 56.188 55.688 56.688 3.3266 0 0 0 0.39518 1 11822 11822 1.8442 0 1 46842 12641 29518 29532 54089 54089 0.06630948311237717 VDPLPSSVEI 10 Unmodified _VDPLPSSVEI_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS UPN47_class_I_Rep_1 2 528.2847900390625 2 528.284597 1054.55464 0.37024 0.00019559 0.19236 0.00010162 0.5626 0.00029721 528.2845607467435 80.384 0.76563 83.849 83.551 84.317 3.465 165 94 2 0 0 0 0.30832 1 19991 19991 30.637 6.616 1 1743300 + 46843 18514 29519 29533 54090 54090 0.029545996579599887 VDPSAMHF 8 Unmodified _VDPSAMHF_ 0 0 0 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 ENSG00000102239|ENST00000370648|BRS3 MSMS UPN46_class_I_Rep_3 1 452.204345703125 2 452.205096 902.395638 NaN NaN NaN NaN NaN NaN NaN 65.802 1 65.802 65.302 66.302 0 0 0 0 0.40581 1 14893 14893 2.8892 0 1 46844 1608 29520 29534 54091 54091 -0.05946392451164684 VDPTLASEFY 10 Unmodified _VDPTLASEFY_ 0 0 0 REV__L1MEg_dup2672|chr3:25732757-25733283:+|1.1626952058160218|0.096025262281811|3.6|151.0|37|3|anti-sense REV__L1MEg_dup2672|chr3:25732757-25733283:+|1.1626952058160218|0.096025262281811|3.6|151.0|37|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.7714233398438 2 571.274229 1140.53391 0.20659 0.00011802 -0.036252 -2.071E-05 0.17034 9.7311E-05 571.2741510374449 49.589 1.3702 53.248 52.848 54.218 3.6592 183 80 4 0 0 0 0.54466 1 10996 10996 6.2058 0.9089 1 634210 + 46845 28743 29521 29535 54092 54092 -0.030739907217139262 VDPVNFKL 8 Unmodified _VDPVNFKL_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966;ENSG00000130656|ENST00000252951|HBZ ENSG00000206172|ENST00000320868|HBA1;ENSG00000130656|ENST00000252951|HBZ ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN47_class_I_Rep_3 4 466.26556396484375 2 466.26601 930.517468 -0.11683 -5.4473E-05 -0.55457 -0.00025858 -0.6714 -0.00031305 466.26564445077577 56.494 0.56043 59.666 59.386 59.947 3.1721 57 33 2 0 0 0 0.82752 1 13011 13011 11.64 3.7301 1 117870 + 46846 5235;2665 29522 29536 54093 54093 0.049429729028588554 VDQDVLERSP 10 Unmodified _VDQDVLERSP_ 0 0 0 REV__ENSG00000169992|ENST00000302926|NLGN2 REV__ENSG00000169992|ENST00000302926|NLGN2 MSMS UPN47_class_I_Rep_2 3 579.2557983398438 2 579.293485 1156.57242 NaN NaN NaN NaN NaN NaN NaN 48.789 1 52.135 51.635 52.635 3.3465 0 0 0 0.53105 1 10578 10578 2.9952 0 1 + 46847 20342 29523 29537 54094 54094 0.00039314912805821223 VDQLIIYPFVV 11 Unmodified _VDQLIIYPFVV_ 0 0 0 REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|51|2|anti-sense REV__L1PREC2_dup7714|chr22:46921818-46923100:-|1.7100923236093208|0.0455321579239069|5.23|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_1 5 435.9201965332031 3 435.919952 1304.73803 NaN NaN NaN NaN NaN NaN NaN 28.752 1 32.309 31.809 32.809 3.5571 0 0 0 0.38417 1 3895 3895 1.3296 0.55311 1 + 46848 30757 29524 29538 54095 54095 0.09784573439583255 VDREIGPAQ 9 Unmodified _VDREIGPAQ_ 0 0 0 REV__ENST00000513570.1_2_3:141121751-141121991:+|nuORF REV__ENST00000513570.1_2_3:141121751-141121991:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 492.7591857910156 2 492.759081 983.503609 -0.30355 -0.00014958 0.057592 2.8379E-05 -0.24596 -0.0001212 492.75895925973225 13.299 0.25416 13.299 13.228 13.482 0 49 29 2 0 0 0 0.1249 1 346 346 1.4819 0.15237 1 60267 + 46849 22752 29525 29539 54096 54096 0.01119695403770038 VDRFLGRK 8 Unmodified _VDRFLGRK_ 0 0 0 MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|5|1|sense MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|5|1|sense MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 495.7804260253906 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 83.11 1 86.522 86.022 87.022 3.4116 0 0 0 0.40746 1 20714 20714 0.69038 0 1 46850 16093 29526 29540 54097 54097 0.08184288636903148 VDRLWAAH 8 Unmodified _VDRLWAAH_ 0 0 0 ENST00000392232.7_2_19:35225081-35225894:+|nuORF;ENST00000599244.5_2_19:35225081-35225894:+|nuORF ENST00000392232.7_2_19:35225081-35225894:+|nuORF ENST00000392232.7_2_19:35225081-35225894:+|nuORF MSMS UPN47_class_I_Rep_2 3 484.2586669921875 2 484.259051 966.503549 NaN NaN NaN NaN NaN NaN NaN 19.544 1 22.94 22.44 23.44 3.3963 0 0 0 0.40738 1 1861 1861 0.79363 0 1 46851 6519 29527 29541 54098 54098 0.018957401944021512 VDRRLKAI 8 Unmodified _VDRRLKAI_ 0 0 0 REV__ENSG00000140943|ENST00000343411|MBTPS1 REV__ENSG00000140943|ENST00000343411|MBTPS1 MSMS UPN47_class_I_Rep_3 4 485.8109130859375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 58.578 1 61.743 61.243 62.243 3.1658 0 0 0 0.40738 1 13622 13622 0.79363 0 1 + 46852 19360 29528 29542 54099 54099 0.12232861670997863 VDRRWYFYRHR 11 Unmodified _VDRRWYFYRHR_ 0 0 0 ENST00000450775.2_1_16:725790-727700:+|nuORF;ENSG00000103269|ENST00000352681|RHBDL1;nc|ENSG00000103269|O75783|RHBDL1 ENST00000450775.2_1_16:725790-727700:+|nuORF ENST00000450775.2_1_16:725790-727700:+|nuORF MSMS UPN48_class_I_Rep_2 6 552.2667236328125 3 551.955164 1652.84366 NaN NaN NaN NaN NaN NaN NaN 26.95 1 30.581 30.081 31.081 3.6311 0 0 0 0.38417 1 3503 3503 0 0 1 46853 1652 29529 29543 54100 54100 0.0433534712844903 VDRTDGQLNYQ 11 Unmodified _VDRTDGQLNYQ_ 0 0 0 ENSG00000081923.15,ATP8B1,chr18,-,I20.1,57669483,57671467|54|11.02|1|intron;ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923.15,ATP8B1,chr18,-,I20.1,57669483,57671467|54|11.02|1|intron ENSG00000081923.15,ATP8B1,chr18,-,I20.1,57669483,57671467|54|11.02|1|intron MSMS UPN48_class_I_Rep_1 5 436.879150390625 3 436.877474 1307.61059 NaN NaN NaN NaN NaN NaN NaN 23.063 1 26.624 26.124 27.124 3.5605 0 0 0 0.38417 1 2346 2346 0.50596 0.051438 1 46854 1220 29530 29544 54101 54101 -0.030907991725143802 VDRVTTKR 8 Unmodified _VDRVTTKR_ 0 0 0 Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 487.79095458984375 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 73.325 1 76.561 76.061 77.061 3.2363 0 0 0 0.40625 1 18102 18102 2.3027 0 1 46855 513 29531 29545 54102 54102 0.0790368091164737 VDRVTTKR 8 Unmodified _VDRVTTKR_ 0 0 0 Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 487.7908020019531 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 73.587 1 76.824 76.324 77.324 3.2363 0 0 0 0.40625 1 18182 18182 2.3027 0 1 46856 513 29531 29545 54103 54103 0.0790368091164737 VDRVTTKR 8 Unmodified _VDRVTTKR_ 0 0 0 Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 487.7904357910156 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 73.276 1 76.757 76.257 77.257 3.4812 0 0 0 0.40625 1 17257 17257 2.3027 0 1 46857 513 29531 29545 54104 54104 0.0790368091164737 VDRVTTKR 8 Unmodified _VDRVTTKR_ 0 0 0 Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense Charlie2b_dup2090|chrX:1504335-1504542:-|2.2862431814301223|0.0017773449670189|10.33|151.0|7|3|sense MSMS UPN48_class_I_Rep_2 6 487.79132080078125 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 73.252 1 76.817 76.317 77.317 3.5645 0 0 0 0.40625 1 17192 17192 2.3027 0 1 46858 513 29531 29545 54105 54105 0.0790368091164737 VDRYLAIVR 9 Unmodified _VDRYLAIVR_ 0 0 0 ENSG00000204882|ENST00000377741|GPR20 ENSG00000204882|ENST00000377741|GPR20 ENSG00000204882|ENST00000377741|GPR20 MULTI-MSMS UPN47_class_I_Rep_2 3 552.8294677734375 2 552.82984 1103.64513 0.18272 0.00010101 -0.47049 -0.0002601 -0.28777 -0.00015909 552.8296020798246 44.6 0.87377 47.955 47.628 48.501 3.3555 78 57 2 0 0 0 0.44742 1 9377 9377 5.2969 1.3525 1 87234 46859 5542 29532 29546 54106 54106 0.09745113496887825 VDSLRRQF 8 Unmodified _VDSLRRQF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MSMS UPN48_class_I_Rep_1 5 510.7810974121094 2 510.78289 1019.55123 NaN NaN NaN NaN NaN NaN NaN 62.618 1 66.081 65.581 66.581 3.4625 0 0 0 0.39624 1 14030 14030 9.3474 0 1 46860 2025 29533 29547 54107 54107 0.04223394394614388 VDSRGLVVL 9 Unmodified _VDSRGLVVL_ 0 0 0 nc|ENSG00000112053|Q96RN1-3|SLC26A8;nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8 nc|ENSG00000112053|Q96RN1-3|SLC26A8 nc|ENSG00000112053|Q96RN1-3|SLC26A8 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2900085449219 2 479.290017 956.565481 0.074727 3.5816E-05 0.02573 1.2332E-05 0.10046 4.8148E-05 479.28996042860337 54.612 1.0664 58.113 57.55 58.617 3.5014 132 59 3 0 0 0 0.30034 2 12346 12302;12346 13.906 0 1 392210 46861 1995 29534 29548 54108;54109 54109 0.08546046822914377 VDSRGLVVL 9 Unmodified _VDSRGLVVL_ 0 0 0 nc|ENSG00000112053|Q96RN1-3|SLC26A8;nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8 nc|ENSG00000112053|Q96RN1-3|SLC26A8 nc|ENSG00000112053|Q96RN1-3|SLC26A8 MULTI-MSMS UPN47_class_I_Rep_3 4 479.2900695800781 2 479.290017 956.565481 0.067909 3.2548E-05 0.050202 2.4061E-05 0.11811 5.6609E-05 479.28994695310905 55.003 0.93938 58.181 57.813 58.753 3.1779 125 54 3 0 0 0 0.32682 1 12624 12624 12.241 0 1 364480 46862 1995 29534 29548 54110 54110 0.08546046822914377 VDSSSTTSSAS 11 Unmodified _VDSSSTTSSAS_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B;ENSG00000138802.11,SEC24B,chr4,+,I7.1,109494857,109506327|39|10.65|1|intron;ENSG00000138802.11,SEC24B,chr4,+,I7.1,109494857,109506327|39|10.65|2|intron;ENSG00000138802.11,SEC24B,chr4,+,I9.1,109510112,109511956|29|8.78|1|intron;ENSG00000138802.11,SEC24B,chr4,+,I9.1,109510112,109511956|29|8.78|3|intron nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MSMS UPN46_class_I_Rep_3 1 514.7222900390625 2 514.722558 1027.43056 NaN NaN NaN NaN NaN NaN NaN 18.562 1 18.562 18.062 19.062 0 0 0 0 0.38417 1 1641 1641 0 0 1 46863 3118 29535 29549 54111 54111 -0.08205522900198048 VDSTMQFVVP 10 Unmodified _VDSTMQFVVP_ 0 0 0 REV__Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|34|3|sense REV__Charlie1a_dup2482|chr7:27803442-27804283:+|1.1374294696155232|0.0587315301013528|4.28|150.0|34|3|sense MSMS UPN47_class_I_Rep_2 3 561.30712890625 2 561.778625 1121.5427 NaN NaN NaN NaN NaN NaN NaN 77.285 1 80.617 80.117 81.117 3.3315 0 0 0 0.53105 1 19164 19164 2.9952 0.26005 1 + 46864 17310 29536 29550 54112 54112 -0.013213403568897775 VDTAWLEI 8 Unmodified _VDTAWLEI_ 0 0 0 nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.K225Nfs*17|1|0.08|ENSG00000009954|chr7:73492821-73492821|C/-|frameshift_variant nc|ENSG00000009954|Q9UIG0-2|BAZ1B nc|ENSG00000009954|Q9UIG0-2|BAZ1B MULTI-SECPEP UPN46_class_I_Rep_3 1 473.3663635253906 2 473.74765 945.480748 0.20926 9.9138E-05 -0.088637 -4.1991E-05 0.12063 5.7147E-05 473.74761929761837 72.22 0.19023 72.22 72.104 72.294 0 27 19 2 0 0 0 0.72333 1 16670 16670 12.532 0 1 51820 46865 749 29537 29551 54113 54113 0.0058267628628527746 VDTHVWSKVG 10 Unmodified _VDTHVWSKVG_ 0 0 0 REV__L1PA17_dup872|chr3:125269391-125270130:+|1.7078224380892535|0.0188758756917615|6.5|151.0|5|1|sense REV__L1PA17_dup872|chr3:125269391-125270130:+|1.7078224380892535|0.0188758756917615|6.5|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 564.29443359375 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 37.102 1 40.609 40.109 41.109 3.507 0 0 0 0.53105 1 6270 6270 1.3295 0 1 + 46866 29480 29538 29552 54114 54114 0.018882438462242135 VDTRLRAL 8 Unmodified _VDTRLRAL_ 0 0 0 nc|ENSG00000251692|Q96A99-2|PTX4;ENSG00000251692|ENST00000447419|PTX4 nc|ENSG00000251692|Q96A99-2|PTX4 nc|ENSG00000251692|Q96A99-2|PTX4 MSMS UPN47_class_I_Rep_3 4 472.2879333496094 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 87.51 1 90.897 90.397 91.397 3.3873 0 0 0 0.40746 1 21929 21929 0.69038 0 1 46867 5746 29539 29553 54115 54115 0.08748582400005489 VDVKRVRV 8 Unmodified _VDVKRVRV_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-4|VPS13C REV__nc|ENSG00000129003|Q709C8-4|VPS13C MSMS UPN47_class_I_Rep_1 2 485.8115539550781 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 57.801 1 61.238 60.738 61.738 3.437 0 0 0 0.40738 1 13299 13299 0.79363 0 1 + 46868 18913 29540 29554 54116 54116 0.12232861670997863 VDVPKSQV 8 Unmodified _VDVPKSQV_ 0 0 0 ENST00000510488.1_1_3:141189685-141190057:-|nuORF ENST00000510488.1_1_3:141189685-141190057:-|nuORF ENST00000510488.1_1_3:141189685-141190057:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 436.2469787597656 2 436.247818 870.481082 -0.42969 -0.00018745 0.052963 2.3105E-05 -0.37673 -0.00016435 436.24777222003354 26.639 0.46252 30.401 30.194 30.656 3.7624 64 39 2 0 0 0 0.82752 1 3843 3843 7.2892 0 1 76220 46869 7181 29541 29555 54117 54117 0.040660960061472906 VDVPKSQV 8 Unmodified _VDVPKSQV_ 0 0 0 ENST00000510488.1_1_3:141189685-141190057:-|nuORF ENST00000510488.1_1_3:141189685-141190057:-|nuORF ENST00000510488.1_1_3:141189685-141190057:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 436.2474670410156 2 436.247818 870.481082 -1.0682 -0.00046599 0.73552 0.00032087 -0.33267 -0.00014513 436.2480134732439 26.96 0.62326 30.302 29.968 30.591 3.3422 87 54 2 0 0 0 0.82752 1 4056 4056 7.2892 0 1 85437 46870 7181 29541 29555 54118 54118 0.040660960061472906 VDVQAGARPL 10 Unmodified _VDVQAGARPL_ 0 0 0 REV__ENST00000371368.5_1_1:54412201-54413639:+|nuORF REV__ENST00000371368.5_1_1:54412201-54413639:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 513.2907104492188 2 513.290548 1024.56654 0.21361 0.00010964 -0.27787 -0.00014263 -0.06426 -3.2984E-05 513.290424958306 30.526 0.52336 34.241 34.017 34.541 3.7146 101 61 2 0 0 0 0.56354 1 4368 4368 1.3295 1.3295 1 142310 + 46871 21962 29542 29556 54119 54119 0.055242611917947215 VDVRSHTIV 9 Unmodified _VDVRSHTIV_ 0 0 0 L1ME4c_dup1312|chr2:197251265-197251699:-|1.3524188318174972|0.095107057988819|3.83|151.0|17|3|sense L1ME4c_dup1312|chr2:197251265-197251699:-|1.3524188318174972|0.095107057988819|3.83|151.0|17|3|sense L1ME4c_dup1312|chr2:197251265-197251699:-|1.3524188318174972|0.095107057988819|3.83|151.0|17|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.2899780273438 2 513.290548 1024.56654 0.3385 0.00017375 -0.35216 -0.00018076 -0.01366 -7.0114E-06 513.2903472215866 30.71 0.48233 34.345 34.111 34.593 3.6351 94 51 2 0 0 0 0.48846 2 4479 4479;4588 1.8442 0 1 127710 46872 12948 29543 29557 54120;54121 54120 0.055242611917947215 VDVVTVRI 8 Unmodified _VDVVTVRI_ 0 0 0 REV__nc|ENSG00000109814|O60701-2|UGDH REV__nc|ENSG00000109814|O60701-2|UGDH MULTI-MSMS UPN47_class_I_Rep_3 4 450.7789001464844 2 450.779285 899.544017 -0.28801 -0.00012983 0.11219 5.0574E-05 -0.17582 -7.9254E-05 450.77922538542845 48.264 0.83508 51.504 51.164 51.999 3.2405 97 47 3 0 0 0 0.82752 1 10553 10553 4.3292 0 1 306650 + 46873 18415 29544 29558 54122 54122 0.09022661794188025 VDWHNKFFY 9 Unmodified _VDWHNKFFY_ 0 0 0 REV__L1MB3_dup11683|chr12:45895836-45896086:+|1.1736243327572695|0.1296696760104171|3.18|151.0|9|1|anti-sense REV__L1MB3_dup11683|chr12:45895836-45896086:+|1.1736243327572695|0.1296696760104171|3.18|151.0|9|1|anti-sense MSMS UPN46_class_I_Rep_3 1 628.2986450195312 2 628.298373 1254.58219 NaN NaN NaN NaN NaN NaN NaN 61.216 1 61.216 60.716 61.716 0 0 0 0 0.4007 1 13612 13612 0.52476 0 1 + 46874 25800 29545 29559 54123 54123 -0.03491452291132191 VDWINELWY 9 Unmodified _VDWINELWY_ 0 0 0 L1ME2_dup4674|chr6:2332218-2332715:+|1.1778475239685742|0.0497343716274293|4.57|151.0|14|3|sense L1ME2_dup4674|chr6:2332218-2332715:+|1.1778475239685742|0.0497343716274293|4.57|151.0|14|3|sense L1ME2_dup4674|chr6:2332218-2332715:+|1.1778475239685742|0.0497343716274293|4.57|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 619.2980346679688 2 619.298039 1236.58152 NaN NaN NaN NaN NaN NaN NaN 64.512 1 68.02 67.52 68.52 3.5083 0 0 0 0.38916 1 14510 14510 3.2813 0 1 46875 12503 29546 29560 54124 54124 -0.027302917308588803 VDWMWPRR 8 Unmodified _VDWMWPRR_ 0 0 0 ENST00000291295.13_1_19:47112759-47113158:+|nuORF ENST00000291295.13_1_19:47112759-47113158:+|nuORF ENST00000291295.13_1_19:47112759-47113158:+|nuORF MSMS UPN48_class_I_Rep_2 6 573.2864990234375 2 573.287285 1144.56002 NaN NaN NaN NaN NaN NaN NaN 14.201 1 17.856 17.356 18.356 3.6542 0 0 0 0.40625 1 398 398 2.3027 0.4585 1 46876 6043 29547 29561 54125 54125 -0.00647955240583542 VDWVPRRPLPA 11 Unmodified _VDWVPRRPLPA_ 0 0 0 REV__SVA_D_dup277|chr3:46963419-46964951:+|1.1471181773868926|0.1402866394197046|3.03|151.0|4|1|sense REV__SVA_D_dup277|chr3:46963419-46964951:+|1.1471181773868926|0.1402866394197046|3.03|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 435.9198303222656 3 435.919056 1304.73534 NaN NaN NaN NaN NaN NaN NaN 28.615 1 32.172 31.672 32.672 3.5571 0 0 0 0.38417 1 3855 3855 1.3296 0 1 + 46877 32080 29548 29562 54126 54126 0.09516162825320862 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 515.7388305664062 2 515.737086 1029.45962 0.32328 0.00016673 0.79373 0.00040936 1.117 0.00057608 515.7376809194567 117.13 0.12212 117.13 117.08 117.2 0 11 8 2 0 0 0 0.82752 1 29023 29023 0.79363 0 1 43808 46878 11009 29549 29563 54127 54127 -0.053932890225723895 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_1 2 515.7380981445312 2 515.737086 1029.45962 NaN NaN NaN NaN NaN NaN NaN 115.37 1 118.97 118.47 119.47 3.5943 0 0 0 0.40604 1 28543 28543 2.5775 0 1 46879 11009 29549 29563 54128 54128 -0.053932890225723895 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7750854492188 2 515.737086 1029.45962 NaN NaN NaN NaN NaN NaN NaN 113.37 1 117 116.5 117.5 3.6314 0 0 0 0.40738 1 27540 27540 0.79363 0 1 46880 11009 29549 29563 54129 54129 -0.053932890225723895 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_3 7 515.7379760742188 2 515.737086 1029.45962 NaN NaN NaN NaN NaN NaN NaN 22.614 1 26.364 25.864 26.864 3.7507 0 0 0 0.40738 1 2336 2336 0.79363 0 1 46881 11009 29549 29563 54130 54130 -0.053932890225723895 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_3 7 515.2797241210938 2 515.737086 1029.45962 NaN NaN NaN NaN NaN NaN NaN 23.867 1 27.636 27.136 28.136 3.769 0 0 0 0.40738 1 2686 2686 0.79363 0 1 46882 11009 29549 29563 54131 54131 -0.053932890225723895 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 515.737086 1029.45962 0.32328 0.00016673 0.79373 0.00040936 1.117 0.00057608 515.7376809194567 117.13 0.12212 117.13 117.08 117.2 0 -0.16129 -5.7943E-05 NaN 0.79363 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 43808 46883 11009 29549 29563 -0.053932890225723895 VDYFPGFW 8 Unmodified _VDYFPGFW_ 0 0 0 L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense L1MB8_dup5010|chr5:138519970-138520358:+|1.4673502274543904|0.0095395419025664|7.27|151.0|20|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 515.737086 1029.45962 0.28009 0.00014446 0.89778 0.00046302 1.1779 0.00060748 515.7380749737371 113.94 0.28091 117.45 117.36 117.64 3.5109 0.16129 4.9385E-05 NaN 0.79363 27 22 2 NaN NaN NaN NaN 0 NaN NaN 0 43745 46884 11009 29549 29563 -0.053932890225723895 VDYQVEYVY 9 Unmodified _VDYQVEYVY_ 0 0 0 REV__L1MA7_dup107|chr1:50773308-50773969:+|1.0025158636857123|0.0071777647475826|7.13|150.0|35|2|anti-sense REV__L1MA7_dup107|chr1:50773308-50773969:+|1.0025158636857123|0.0071777647475826|7.13|150.0|35|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.2742309570312 2 589.274229 1176.53391 0.41863 0.00024669 -0.12812 -7.55E-05 0.2905 0.00017119 589.2739822233071 71.161 0.92187 74.451 74.114 75.036 3.2899 195 82 3 0 0 0 0.38714 2 17437 17437;17532 8.7454 0 1 518370 + 46885 25493 29550 29564 54132;54133 54132 -0.04729990721716604 VDYVLIVGQAG 11 Unmodified _VDYVLIVGQAG_ 0 0 0 REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF MSMS UPN48_class_I_Rep_1 5 567.2955932617188 2 567.313689 1132.61282 NaN NaN NaN NaN NaN NaN NaN 52.882 1 56.401 55.901 56.901 3.5192 0 0 0 0.35398 1 11043 11043 8.7454 1.4562 1 + 46886 18063 29551 29565 54134 54134 0.051822813032458726 VDYVYKFQT 9 Unmodified _VDYVYKFQT_ 0 0 0 REV__L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|74|1|anti-sense REV__L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|74|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 581.7930908203125 2 581.792589 1161.57063 0.44984 0.00026171 -0.44155 -0.00025689 0.0082906 4.8234E-06 581.792198413681 71.119 0.26731 74.33 74.083 74.351 3.2113 35 22 2 0 0 0 0.12477 1 17367 17367 1.6526 0.32309 1 207020 + 46887 25514 29552 29566 54135 54135 -0.0036969410516576318 VDYVYKFQT 9 Unmodified _VDYVYKFQT_ 0 0 0 REV__L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|74|1|anti-sense REV__L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|74|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 581.792589 1161.57063 0.41848 0.00024347 -0.28771 -0.00016739 0.13077 7.6081E-05 581.7922685879277 71.138 0.72077 74.421 74.163 74.884 3.2828 0.080296 3.7281E-05 NaN 1.6526 139 64 3 NaN NaN NaN NaN 0 NaN NaN 0 232600 + 46888 25514 29552 29566 -0.0036969410516576318 VEAAWYPWW 9 Unmodified _VEAAWYPWW_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;ENST00000477288.5_1_6:30882610-30884901:+|nuORF;nc|ENSG00000204394|P26640-2|VARS1;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2 ENSG00000204394|ENST00000375663|VARS1;ENSG00000137411|ENST00000676266|VARS2 ENSG00000204394|ENST00000375663|VARS1 MSMS UPN48_class_I_Rep_3 7 604.281494140625 2 604.282192 1206.54983 NaN NaN NaN NaN NaN NaN NaN 26.38 1 30.146 29.646 30.646 3.7663 0 0 0 0.40038 1 3331 3331 0.6015 0 1 46889 5522;3022 29553 29567 54136 54136 -0.04518239694175463 VEAGVWVAVY 10 Unmodified _VEAGVWVAVY_ 0 0 0 REV__ENSG00000184986|ENST00000392519|TMEM121 REV__ENSG00000184986|ENST00000392519|TMEM121 MULTI-MSMS UPN48_class_I_Rep_3 7 546.7901000976562 2 546.78985 1091.56515 0.46501 0.00025426 0.15502 8.4762E-05 0.62003 0.00033902 546.7897928160779 61.744 0.9122 65.254 64.839 65.751 3.5104 199 78 4 0 0 0 0.46161 1 13752 13752 14.838 2.3067 1 687490 + 46890 20839 29554 29568 54137 54137 0.023026271030403223 VEAIFSKY 8 Unmodified _VEAIFSKY_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000528764.1_1_11:86735664-86735814:+|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MULTI-MSMS UPN46_class_I_Rep_3 1 478.7580261230469 2 478.758018 955.501483 0.2017 9.6565E-05 0.06697 3.2062E-05 0.26867 0.00012863 478.75785024061577 51.531 0.68747 51.531 51.223 51.91 0 165 78 3 0 0 0 0.82752 5 10903 10903;10939;10975;11016;11026 59.368 27.063 1 612650 46891 1388 29555 29569 54138;54139;54140;54141;54142 54138 0.02195266665944473 VEALKPNLKNK 11 Unmodified _VEALKPNLKNK_ 0 0 0 REV__L1M4c_dup3386|chr21:46573674-46575964:+|1.143320507792541|0.1417965402323464|3.01|150.0|37|2|sense REV__L1M4c_dup3386|chr21:46573674-46575964:+|1.143320507792541|0.1417965402323464|3.01|150.0|37|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 627.3843994140625 2 627.382437 1252.75032 0.55795 0.00035005 -0.19914 -0.00012494 0.35881 0.00022511 627.8838963848341 103.68 0.57166 107.44 107.1 107.67 3.7627 154 85 3 0 0 0 0.65271 1 25437 25437 2.9952 0 1 43496000 + 46892 24597 29556 29570 54143 54143 0.13405609902633842 VEAQATHF 8 Unmodified _VEAQATHF_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS UPN46_class_I_Rep_3 1 451.72149658203125 2 451.721967 901.429381 -0.051262 -2.3156E-05 -0.42292 -0.00019104 -0.47418 -0.0002142 451.7217033633997 30.834 0.66456 30.834 30.661 31.326 0 83 52 2 0 0 0 0.82752 2 5069 5069;5116 36.506 11.107 1 210950 46893 1105 29557 29571 54144;54145 54144 -0.025276476877593268 VEARLTEL 8 Unmodified _VEARLTEL_ 0 0 0 nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;ENST00000425415.2_1_6:71191853-71212500:+|nuORF;ENST00000393299.6_1_6:71138108-71233862:+|nuORF nc|ENSG00000082269|Q9P2D6-3|FAM135A nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-SECPEP UPN48_class_I_Rep_2 6 466.3077392578125 2 465.766374 929.518196 0.13957 6.5006E-05 0.029599 1.3786E-05 0.16917 7.8792E-05 465.76606216850246 49.555 0.40089 53.25 53.038 53.439 3.6946 31 25 2 0 0 0 0.72333 1 10070 10070 11.64 0 1 66316 46894 1223 29558 29572 54146 54146 0.05061767551887897 VEDAPPIDL 9 Unmodified _VEDAPPIDL_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MSMS UPN48_class_I_Rep_3 7 484.750244140625 2 484.75039 967.486227 NaN NaN NaN NaN NaN NaN NaN 61.968 1 65.478 64.978 65.978 3.5104 0 0 0 0.31276 1 13738 13738 10.074 3.3508 1 46895 884 29559 29573 54147 54147 0.0011835507809792034 VEDFVMMF 8 2 Oxidation (M) _VEDFVM(Oxidation (M))M(Oxidation (M))F_ VEDFVM(1)M(1)F VEDFVM(47)M(47)F 0 0 2 ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1;ENSG00000163939.18,PBRM1,chr3,-,I23.1,52589256,52603520|30|12.7|8|intron;ENSG00000163939.18,PBRM1,chr3,-,I23.1,52589256,52603520|30|12.7|7|intron;ENSG00000163939.18,PBRM1,chr3,-,I23.1,52589256,52603520|30|12.7|3|intron;nc|ENSG00000163939|Q86U86-6|PBRM1;ENSG00000163939.18,PBRM1,chr3,-,I23.1,52589256,52603520|30|12.7|6|intron;ENSG00000163939.18,PBRM1,chr3,-,I23.1,52589256,52603520|30|12.7|5|intron;ENSG00000163939.18,PBRM1,chr3,-,I23.1,52589256,52603520|30|12.7|4|intron;ENST00000480064.1_1_3:52643285-52649409:-|nuORF ENSG00000163939|ENST00000707071|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 MULTI-MSMS UPN46_class_I_Rep_3 1 525.2196044921875 2 525.219554 1048.42455 0.28444 0.00014939 -0.13898 -7.2998E-05 0.14545 7.6394E-05 525.2194369754479 70.056 0.47495 70.056 69.827 70.302 0 66 51 2 0 0 0 0.82752 2 16055 16055;16105 46.921 37.573 1 173420 46896 4061 29560 29574 54148;54149 54148 130;131 -0.09772035937021428 VEDIIHESY 9 Unmodified _VEDIIHESY_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS UPN46_class_I_Rep_3 1 552.7638549804688 2 552.764029 1103.5135 0.36433 0.00020139 0.025207 1.3934E-05 0.38954 0.00021532 552.7640467990047 48.271 0.57371 48.271 48.016 48.59 0 116 58 3 0 0 0 0.0064763 6 10078 9978;9997;10034;10078;10105;10119 103.35 74.272 1 547730 46897 1824 29561 29575 54150;54151;54152;54153;54154;54155 54153 -0.03411161381518468 VEDLVVVSVY 10 Unmodified _VEDLVVVSVY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS UPN46_class_I_Rep_3 1 561.309326171875 2 561.308072 1120.60159 NaN NaN NaN NaN NaN NaN NaN 42.846 1 42.846 42.346 43.346 0 0 0 0 0.53105 1 8514 8514 3.5965 0 1 + 46898 20499 29562 29576 54156 54156 0.04611459209104396 VEDRLLVH 8 Unmodified _VEDRLLVH_ 0 0 0 nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4 nc|ENSG00000154655|Q8NA19-2|L3MBTL4 nc|ENSG00000154655|Q8NA19-2|L3MBTL4 MSMS UPN47_class_I_Rep_1 2 490.7815856933594 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 113.45 1 117.02 116.52 117.52 3.572 0 0 0 0.40625 1 27991 27991 2.3027 0 1 46899 3679 29563 29577 54157 54157 0.05448876163097793 VEDRLLVH 8 Unmodified _VEDRLLVH_ 0 0 0 nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4 nc|ENSG00000154655|Q8NA19-2|L3MBTL4 nc|ENSG00000154655|Q8NA19-2|L3MBTL4 MSMS UPN48_class_I_Rep_3 7 490.7809753417969 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 115.88 1 119.52 119.02 120.02 3.6433 0 0 0 0.40738 1 27581 27581 0.79363 0 1 46900 3679 29563 29577 54158 54158 0.05448876163097793 VEDWIREN 8 Unmodified _VEDWIREN_ 0 0 0 L1MEd_dup9900|chr7:102164810-102165121:+|1.3119133023650638|0.0245369093118395|5.74|151.0|1|1|sense L1MEd_dup9900|chr7:102164810-102165121:+|1.3119133023650638|0.0245369093118395|5.74|151.0|1|1|sense L1MEd_dup9900|chr7:102164810-102165121:+|1.3119133023650638|0.0245369093118395|5.74|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 530.7564697265625 2 530.756538 1059.49852 NaN NaN NaN NaN NaN NaN NaN 41.669 1 45.034 44.534 45.534 3.3655 0 0 0 0.40625 1 8419 8419 2.3027 0 1 46901 13224 29564 29578 54159 54159 -0.028846084588622034 VEECFTSNY 9 Unmodified _VEECFTSNY_ 0 0 0 L1PA5_dup257|chr1:91000002-91003696:+|3.376382551919044|0.0754470281471283|5.48|151.0|232|3|anti-sense;L1PA4_dup1351|chr2:135404853-135408984:+|1.0607043982883004|0.044269210225726|4.58|151.0|255|3|anti-sense;L1PA6_dup5374|chr17:30406815-30413023:-|4.517269275157337|0.295299546788949|3.94|151.0|280|2|anti-sense;L1PA7_dup11281|chr14:31615304-31621745:-|2.6177434098056|0.027241503344952|6.59|151.0|363|3|anti-sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|208|1|anti-sense;L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|209|2|anti-sense L1PA5_dup257|chr1:91000002-91003696:+|3.376382551919044|0.0754470281471283|5.48|151.0|232|3|anti-sense L1PA5_dup257|chr1:91000002-91003696:+|3.376382551919044|0.0754470281471283|5.48|151.0|232|3|anti-sense MSMS UPN47_class_I_Rep_2 3 546.220458984375 2 546.221139 1090.42773 NaN NaN NaN NaN NaN NaN NaN 44.821 1 48.176 47.676 48.676 3.3556 0 0 0 0.35339 1 9385 9385 7.9102 0 1 46902 14318 29565 29579 54160 54160 -0.1138706955869111 VEEDPCACE 9 Unmodified _VEEDPCACE_ 0 0 0 ENST00000494561.1_1_1:31186977-31188978:-|nuORF;ENSG00000162510|ENST00000373765|MATN1 ENST00000494561.1_1_1:31186977-31188978:-|nuORF ENST00000494561.1_1_1:31186977-31188978:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.7655334472656 2 497.67825 993.341948 NaN NaN NaN NaN NaN NaN NaN 33.884 1 37.404 36.904 37.904 3.5201 0 0 0 0.4029 1 5347 5347 0 0 1 46903 3936 29566 29580 54161 54161 -0.15498977735865083 VEEEIVTLRQV 11 Unmodified _VEEEIVTLRQV_ 0 0 0 nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 nc|ENSG00000101150|O43399-6|TPD52L2 nc|ENSG00000101150|O43399-6|TPD52L2 MULTI-MSMS UPN47_class_I_Rep_1 2 438.91351318359375 3 438.913637 1313.71908 -0.40677 -0.00017854 0.28475 0.00012498 -0.12202 -5.3556E-05 438.91373328931957 30.914 0.65698 34.646 34.365 35.022 3.7324 114 55 3 0 0 0 0.56006 1 5081 5081 6.2344 0.71106 1 167110 46904 1551 29567 29581 54162 54162 0.0747699207788628 VEEEIVTLRQV 11 Unmodified _VEEEIVTLRQV_ 0 0 0 nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 nc|ENSG00000101150|O43399-6|TPD52L2 nc|ENSG00000101150|O43399-6|TPD52L2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 438.913637 1313.71908 -0.70928 -0.00031131 0.58973 0.00025884 -0.11955 -5.2473E-05 438.9138492470188 31.064 0.6882 34.547 34.245 34.933 3.4821 -0.049799 0.00015132 NaN 6.2344 102 58 2 NaN NaN NaN NaN 0 NaN NaN 0 176370 46905 1551 29567 29581 0.0747699207788628 VEEIALSLI 9 Unmodified _VEEIALSLI_ 0 0 0 MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.7921447753906 2 493.792058 985.569563 0.18623 9.1959E-05 0.045569 2.2502E-05 0.2318 0.00011446 493.7919265188089 82.973 0.36916 86.56 86.491 86.861 3.5871 76 40 3 0 0 0 0.28552 1 19878 19878 14.838 0 1 267280 46906 16547 29568 29582 54163 54163 0.07620091525961925 VEEIALSLI 9 Unmodified _VEEIALSLI_ 0 0 0 MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.7919006347656 2 493.792058 985.569563 0.27033 0.00013349 -0.11866 -5.8594E-05 0.15167 7.4895E-05 493.7918822488048 83.553 0.47588 87.234 87.048 87.524 3.6814 92 51 3 0 0 0 0.28552 1 19929 19929 14.838 0 1 296970 46907 16547 29568 29582 54164 54164 0.07620091525961925 VEEIALSLI 9 Unmodified _VEEIALSLI_ 0 0 0 MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MSTA-int_dup2119|chr10:74482474-74484069:-|1.124894866733705|0.0070025787962636|7.33|150.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.7918701171875 2 493.792058 985.569563 0.27566 0.00013612 -0.11892 -5.8723E-05 0.15674 7.7397E-05 493.79190505588906 83.457 0.44031 87.185 86.823 87.263 3.7281 100 57 2 0 0 0 0.28552 1 19765 19765 14.838 0 1 280800 46908 16547 29568 29582 54165 54165 0.07620091525961925 VEEILSVAY 9 Unmodified _VEEILSVAY_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MSMS UPN46_class_I_Rep_3 1 511.77398681640625 2 511.773865 1021.53318 NaN NaN NaN NaN NaN NaN NaN 72.105 1 72.105 71.605 72.605 0 0 0 0 0.059724 1 16648 16648 34.102 1.797 1 46909 4201 29569 29583 54166 54166 0.02327214629235641 VEEILSVAY 9 Unmodified _VEEILSVAY_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MSMS UPN46_class_I_Rep_3 1 511.7735900878906 2 511.773865 1021.53318 NaN NaN NaN NaN NaN NaN NaN 72.225 1 72.225 71.725 72.725 0 0 0 0 0.096434 1 16684 16684 25.399 0 1 46910 4201 29569 29583 54167 54167 0.02327214629235641 VEEKHTVNV 9 Unmodified _VEEKHTVNV_ 0 0 0 REV__ENST00000467758.1_1_1:62941350-62941566:-|nuORF REV__ENST00000467758.1_1_1:62941350-62941566:-|nuORF MSMS UPN46_class_I_Rep_3 1 527.7824096679688 2 527.780013 1053.54547 NaN NaN NaN NaN NaN NaN NaN 80.871 1 80.871 80.371 81.371 0 0 0 0 0.34878 1 19072 19072 8.1555 0.24537 1 + 46911 22482 29570 29584 54168 54168 0.02084251092287559 VEEKLQLLKI 10 Unmodified _VEEKLQLLKI_ 0 0 0 REV__L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|9|1|sense REV__L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 404.9229431152344 3 404.923585 1211.74892 NaN NaN NaN NaN NaN NaN NaN 38.55 1 42.267 41.767 42.767 3.7164 0 0 0 0.53105 1 6734 6734 1.5923 0 1 + 46912 29745 29571 29585 54169 54169 0.15151975813887475 VEELFERKY 9 Unmodified _VEELFERKY_ 0 0 0 ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-MSMS UPN47_class_I_Rep_1 2 404.87994384765625 3 404.880156 1211.61864 -0.43884 -0.00017768 -0.044748 -1.8118E-05 -0.48359 -0.00019579 404.88007698351015 38.893 0.87532 42.558 42.192 43.068 3.6652 107 55 3 0 0 0 0.2924 4 7503 7503;7546;7629;7673 14.405 0 1 148880 46913 5791 29572 29586 54170;54171;54172;54173 54170 0.02129379814891763 VEELFERKY 9 Unmodified _VEELFERKY_ 0 0 0 ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|2|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|6|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|4|intron;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|5|intron;ENSG00000263001|ENST00000573035|GTF2I;ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|1|intron;nc|ENSG00000263001|P78347-3|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-2|GTF2I ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron ENSG00000263001.7,GTF2I,chr7,+,I31.1,74749091,74749267|32|36.57|7|intron MULTI-MSMS UPN47_class_I_Rep_3 4 404.8800048828125 3 404.880156 1211.61864 -1.1573 -0.00046856 0.15782 6.39E-05 -0.99947 -0.00040466 404.8804390665064 39.409 1.2022 42.647 42.349 43.551 3.238 136 79 2 0 0 0 0.2924 3 7808 7808;7848;7889 14.405 1.2277 1 128280 46914 5791 29572 29586 54174;54175;54176 54174 0.02129379814891763 VEELKYADI 9 Unmodified _VEELKYADI_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MSMS UPN48_class_I_Rep_1 5 540.2847900390625 2 540.284597 1078.55464 0.4036 0.00021806 0.0091186 4.9267E-06 0.41272 0.00022299 540.2845732501473 79.657 0.39397 83.206 83.039 83.432 3.5487 79 44 2 0 0 0 0.24936 2 19033 19033;19065 17.113 3.1066 1 192390 46915 3161 29573 29587 54177;54178 54177 0.018505996579506245 VEELKYADI 9 Unmodified _VEELKYADI_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MSMS UPN48_class_I_Rep_3 7 540.2848510742188 2 540.284597 1078.55464 0.58316 0.00031507 -0.20755 -0.00011214 0.37561 0.00020294 540.284452259332 79.652 0.2888 83.294 83.04 83.329 3.6423 69 35 2 0 0 0 0.26468 1 18870 18870 16.149 3.1066 1 203030 46916 3161 29573 29587 54179 54179 0.018505996579506245 VEEPVYKDK 9 Unmodified _VEEPVYKDK_ 0 0 0 REV__Tigger6a_dup52|chr2:37149537-37150593:+|1.2733417137739431|0.0882341916957139|3.85|151.0|10|1|sense REV__Tigger6a_dup52|chr2:37149537-37150593:+|1.2733417137739431|0.0882341916957139|3.85|151.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 553.7887573242188 2 553.790047 1105.56554 NaN NaN NaN NaN NaN NaN NaN 29.351 1 32.982 32.482 33.482 3.6316 0 0 0 0.39428 1 4158 4158 2.0598 0 1 + 46917 32802 29574 29588 54180 54180 0.01698002032230761 VEERIKFW 8 Unmodified _VEERIKFW_ 0 0 0 REV__ENSG00000165684|ENST00000684778|SNAPC4 REV__ENSG00000165684|ENST00000684778|SNAPC4 MULTI-MSMS UPN48_class_I_Rep_2 6 553.8013916015625 2 553.803291 1105.59203 0.49571 0.00027453 -3.8725 -0.0021446 -3.3768 -0.0018701 553.8011183340845 31.767 0.094225 35.408 35.358 35.452 3.641 12 8 2 0 0 0 0.82752 1 4828 4828 2.0598 0 1 50678 + 46918 20131 29575 29589 54181 54181 0.0434573571421879 VEERNLLSV 9 Unmodified _VEERNLLSV_ 0 0 0 ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE ENST00000489287.1_1_17:1268113-1303470:-|nuORF ENST00000489287.1_1_17:1268113-1303470:-|nuORF MSMS UPN47_class_I_Rep_3 4 529.7944946289062 2 529.795663 1057.57677 NaN NaN NaN NaN NaN NaN NaN 56.891 1 60.064 59.564 60.564 3.1721 0 0 0 0.28608 1 13111 13111 11.495 2.7493 1 46919 1884 29576 29590 54182 54182 0.05028824126384279 VEESSFLTL 9 Unmodified _VEESSFLTL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN48_class_I_Rep_1 5 512.7632446289062 2 512.763497 1023.51244 0.27921 0.00014317 -0.043994 -2.2558E-05 0.23521 0.00012061 512.7634192056286 72.078 0.46668 75.551 75.247 75.714 3.4732 55 43 2 0 0 0 0.052902 1 16879 16879 47.749 9.7747 1 78698 46920 2418 29577 29591 54183 54183 0.0016262424957176336 VEEWLLCEP 9 Unmodified _VEEWLLCEP_ 0 0 0 REV__ENST00000464156.5_1_2:25038570-25039677:+|nuORF REV__ENST00000464156.5_1_2:25038570-25039677:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.2708129882812 2 559.26535 1116.51615 0.49074 0.00027445 0.74713 0.00041784 1.2379 0.0006923 559.2650613557545 78.819 0.34811 82.175 82.044 82.392 3.3554 74 36 3 0 0 0 0.46869 1 19578 19578 3.9444 0.66309 1 54361 + 46921 22457 29578 29592 54184 54184 -0.037450292482162695 VEEWLPSPQK 10 Unmodified _VEEWLPSPQK_ 0 0 0 ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 ENSG00000143061|ENST00000369486|IGSF3 MULTI-MSMS UPN47_class_I_Rep_3 4 405.21295166015625 3 404.880156 1211.61864 -1.1573 -0.00046856 0.15782 6.39E-05 -0.99947 -0.00040466 404.8804390665064 39.409 1.2022 42.647 42.349 43.551 3.238 136 79 2 0 0 0 0.55335 1 8004 8004 5.0475 0.51865 1 128280 46922 3272 29579 29593 54185 54185 0.02129379814891763 VEFDEVDSL 9 Unmodified _VEFDEVDSL_ 0 0 0 ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENST00000479338.5_1_7:73588713-73604094:+|nuORF ENST00000479338.5_1_7:73588713-73604094:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 526.7431030273438 2 526.742762 1051.47097 0.43021 0.00022661 -0.21877 -0.00011523 0.21144 0.00011138 526.7425038268711 65.451 0.38636 68.931 68.727 69.113 3.4792 40 28 2 0 0 0 0.20276 1 14880 14880 20.454 4.6064 1 119030 46923 1799 29580 29594 54186 54186 -0.052705565097539875 VEFDEVDSL 9 Unmodified _VEFDEVDSL_ 0 0 0 ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENST00000479338.5_1_7:73588713-73604094:+|nuORF ENST00000479338.5_1_7:73588713-73604094:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 526.7427368164062 2 526.742762 1051.47097 0.49248 0.00025941 -0.17 -8.9547E-05 0.32248 0.00016986 527.2442803014627 65.45 0.37628 68.958 68.767 69.143 3.5077 41 26 2 0 0 0 0.20276 2 14813 14755;14813 20.454 4.6064 1 105490 46924 1799 29580 29594 54187;54188 54188 -0.052705565097539875 VEFDFFFSY 9 Unmodified _VEFDFFFSY_ 0 0 0 L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|116|2|anti-sense L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|116|2|anti-sense L1PA16_dup1747|chr2:184747680-184749605:-|1.0277676046022115|0.003596347860417|8.16|144.0|116|2|anti-sense MSMS UPN47_class_I_Rep_1 2 600.767333984375 2 600.76604 1199.51753 NaN NaN NaN NaN NaN NaN NaN 67.186 1 70.547 70.047 71.047 3.3611 0 0 0 0.39518 1 16140 16140 1.8442 0 1 46925 14064 29581 29595 54189 54189 -0.07425071887792001 VEFFEFIVYYG 11 Unmodified _VEFFEFIVYYG_ 0 0 0 L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|73|1|anti-sense L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|73|1|anti-sense L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|73|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 471.56353759765625 3 471.563945 1411.67001 -0.78673 -0.00037099 -0.07506 -3.5396E-05 -0.86179 -0.00040639 471.5639696305388 19.888 1.7489 23.24 22.817 24.566 3.3514 367 157 3 0 0 0 0.65891 8 2005 1859;1895;2005;2040;2077;2169;2223;2268 2.4348 0.70888 1 298970 46926 9838 29582 29596 54190;54191;54192;54193;54194;54195;54196;54197 54192 -0.019362962110562876 VEFFHVEDL 9 Unmodified _VEFFHVEDL_ 0 0 0 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 MULTI-MSMS UPN48_class_I_Rep_1 5 567.7772216796875 2 567.776939 1133.53933 0.45845 0.0002603 0.049397 2.8047E-05 0.50785 0.00028834 567.7768708965459 69.272 0.74058 72.727 72.349 73.09 3.4548 139 54 3 0 0 0 0.043452 4 16011 15971;16011;16052;16091 51.63 28.894 1 970700 46927 3295 29583 29597 54198;54199;54200;54201 54199 -0.02210267139230382 VEFFHVEDL 9 Unmodified _VEFFHVEDL_ 0 0 0 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 MULTI-MSMS UPN48_class_I_Rep_2 6 567.7774658203125 2 567.776939 1133.53933 0.48915 0.00027773 0.04687 2.6612E-05 0.53602 0.00030434 567.7768762608341 69.07 0.92926 72.592 72.233 73.162 3.5216 165 70 3 0 0 0 0.043452 3 15922 15922;15966;16003 51.63 28.894 1 626340 46928 3295 29583 29597 54202;54203;54204 54202 -0.02210267139230382 VEFFHVEDL 9 Unmodified _VEFFHVEDL_ 0 0 0 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 MULTI-MSMS UPN48_class_I_Rep_3 7 567.7771606445312 2 567.776939 1133.53933 0.51283 0.00029117 0.088847 5.0445E-05 0.60168 0.00034162 567.7769078779892 69.021 0.94324 72.53 72.074 73.017 3.5094 175 70 4 0 0 0 0.028995 5 15896 15778;15816;15855;15896;15995 57.722 34.986 1 735990 46929 3295 29583 29597 54205;54206;54207;54208;54209 54208 -0.02210267139230382 VEFHLLII 8 Unmodified _VEFHLLII_ 0 0 0 nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 MSMS UPN48_class_I_Rep_3 7 492.3024597167969 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 67.899 1 71.407 70.907 71.907 3.5077 0 0 0 0.40738 1 15535 15535 0.79363 0 1 46930 4790 29584 29598 54210 54210 0.09316422833683191 VEFQEAQAY 9 Unmodified _VEFQEAQAY_ 0 0 0 ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C ENSG00000108774|ENST00000346213|RAB5C ENSG00000108774|ENST00000346213|RAB5C MSMS UPN46_class_I_Rep_3 1 542.7504272460938 2 542.750921 1083.48729 NaN NaN NaN NaN NaN NaN NaN 52 1 52 51.5 52.5 0 0 0 0 0.087549 1 11090 11090 27.223 11.074 1 46931 1875 29585 29599 54211 54211 -0.051114305530063575 VEFSQHLFV 9 Unmodified _VEFSQHLFV_ 0 0 0 L1PBa_dup1193|chr9:36414707-36415446:-|1.4738648391266702|0.0504468588770131|4.87|151.0|32|2|anti-sense L1PBa_dup1193|chr9:36414707-36415446:-|1.4738648391266702|0.0504468588770131|4.87|151.0|32|2|anti-sense L1PBa_dup1193|chr9:36414707-36415446:-|1.4738648391266702|0.0504468588770131|4.87|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.2850952148438 2 553.287474 1104.5604 NaN NaN NaN NaN NaN NaN NaN 62.122 1 65.589 65.089 66.089 3.4678 0 0 0 0.35339 1 13879 13879 7.9102 0.62092 1 46932 15363 29586 29600 54212 54212 0.01229742960299518 VEFVIFHLS 9 Unmodified _VEFVIFHLS_ 0 0 0 L1MEc_dup14328|chr13:50101783-50102497:+|2.892132818133577|0.0862993984480191|5.07|151.0|30|1|anti-sense L1MEc_dup14328|chr13:50101783-50102497:+|2.892132818133577|0.0862993984480191|5.07|151.0|30|1|anti-sense L1MEc_dup14328|chr13:50101783-50102497:+|2.892132818133577|0.0862993984480191|5.07|151.0|30|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 545.7993774414062 2 545.800217 1089.58588 0.5271 0.00028769 0.12888 7.0343E-05 0.65598 0.00035803 545.8001667149642 72.705 0.36757 76.242 76.048 76.416 3.5373 36 27 2 0 0 0 0.28552 1 16989 16989 14.838 2.3067 1 84325 46933 13024 29587 29601 54213 54213 0.044672174827155686 VEGDPIVAL 9 Unmodified _VEGDPIVAL_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS UPN47_class_I_Rep_1 2 456.75543212890625 2 456.755475 911.496398 0.048051 2.1948E-05 0.21456 9.8002E-05 0.26261 0.00011995 456.75539220533096 65.4 0.66633 68.756 68.562 69.228 3.3557 63 34 2 0 0 0 0.33654 1 15674 15674 11.64 0.81637 1 128800 46934 4714 29588 29602 54214 54214 0.03710962803347684 VEGDPIVAL 9 Unmodified _VEGDPIVAL_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7554016113281 2 456.755475 911.496398 -0.17634 -8.0544E-05 0.71469 0.00032644 0.53835 0.0002459 456.75556867742745 65.627 0.71196 68.807 68.602 69.314 3.1795 96 43 3 0 0 0 0.25207 1 15858 15858 16.942 1.0951 1 192880 46935 4714 29588 29602 54215 54215 0.03710962803347684 VEGFFFVL 8 Unmodified _VEGFFFVL_ 0 0 0 L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|191|2|anti-sense L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|191|2|anti-sense L1PA16_dup4358|chr5:34237779-34241635:+|1.225795984106035|0.0244228518882127|5.65|151.0|191|2|anti-sense MSMS UPN48_class_I_Rep_3 7 479.25762939453125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 33.323 1 37.013 36.513 37.513 3.6896 0 0 0 0.40738 1 5165 5165 0.79363 0 1 46936 14085 29589 29603 54216 54216 0.020764720168926942 VEGRRQIY 8 Unmodified _VEGRRQIY_ 0 0 0 ENST00000578036.5_1_17:62775732-62776705:-|nuORF ENST00000578036.5_1_17:62775732-62776705:-|nuORF ENST00000578036.5_1_17:62775732-62776705:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 510.38128662109375 2 510.78289 1019.55123 0.30174 0.00015412 -1.5193 -0.00077605 -1.2176 -0.00062193 511.2823025962844 42.789 0.033707 42.789 42.765 42.799 0 4 2 2 0 0 0 0.72333 1 8499 8499 5.7604 3.1829 1 45023 46937 7539 29590 29604 54217 54217 0.042233943946030195 VEHIKNKQ 8 Unmodified _VEHIKNKQ_ 0 0 0 REV__LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|178|2|anti-sense REV__LTR25-int_dup437|chr11:28136533-28139656:-|1.309839241683416|0.1016266012845363|3.69|151.0|178|2|anti-sense MSMS UPN48_class_I_Rep_2 6 498.284423828125 2 498.285266 994.555979 NaN NaN NaN NaN NaN NaN NaN 41.722 1 45.472 44.972 45.972 3.7508 0 0 0 0.4044 1 7647 7647 4.756 0.81161 1 + 46938 30886 29591 29605 54218 54218 0.05848278537371243 VEHKVETF 8 Unmodified _VEHKVETF_ 0 0 0 ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF ENST00000484240.1_1_17:44798950-44799232:-|nuORF ENST00000484240.1_1_17:44798950-44799232:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 494.7928466796875 2 494.758549 987.502546 -0.020491 -1.0138E-05 0.01237 6.1201E-06 -0.0081208 -4.0179E-06 494.7585396073439 27.004 0.70333 27.004 26.659 27.363 0 74 54 2 0 0 0 0.72333 1 3929 3929 34.402 0 1 93740 46939 4551 29592 29606 54219 54219 0.008294810348502324 VEHLGHFH 8 Unmodified _VEHLGHFH_ 0 0 0 L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|346|3|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|346|3|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|346|3|anti-sense MSMS UPN48_class_I_Rep_3 7 488.24273681640625 2 488.243401 974.472249 NaN NaN NaN NaN NaN NaN NaN 38.662 1 42.322 41.822 42.822 3.6595 0 0 0 0.40604 1 6670 6670 2.5775 0 1 46940 15078 29593 29607 54220 54220 -0.016008328396765137 VEHLRRHW 8 Unmodified _VEHLRRHW_ 0 0 0 ENST00000358769.6_1_10:70066654-70092651:-|nuORF;ENST00000309049.8_1_10:70066654-70092651:-|nuORF ENST00000358769.6_1_10:70066654-70092651:-|nuORF ENST00000358769.6_1_10:70066654-70092651:-|nuORF MSMS UPN48_class_I_Rep_3 7 566.8101196289062 2 566.809774 1131.60499 NaN NaN NaN NaN NaN NaN NaN 36.235 1 39.901 39.401 40.401 3.6667 0 0 0 0.40625 1 5973 5973 2.3027 0 1 46941 6102 29594 29608 54221 54221 0.04445611616984024 VEHLTAPLAST 11 Unmodified _VEHLTAPLAST_ 0 0 0 MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|18|3|anti-sense MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|18|3|anti-sense MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|18|3|anti-sense MSMS UPN48_class_I_Rep_3 7 569.8097534179688 2 569.808771 1137.60299 NaN NaN NaN NaN NaN NaN NaN 28.024 1 31.767 31.267 32.267 3.7424 0 0 0 0.38417 1 3757 3757 5.2969 1.7004 1 46942 15837 29595 29609 54222 54222 0.039690932978373894 VEHVAAPRPY 10 Unmodified _VEHVAAPRPY_ 0 0 0 REV__ENSG00000170162|ENST00000326274|VGLL2 REV__ENSG00000170162|ENST00000326274|VGLL2 MSMS UPN46_class_I_Rep_3 1 569.80224609375 2 569.803823 1137.59309 NaN NaN NaN NaN NaN NaN NaN 63.232 1 63.232 62.732 63.732 0 0 0 0 0.53105 1 14188 14188 3.2813 0.54611 1 + 46943 20351 29596 29610 54223 54223 0.029799500831359182 VEIEYVEKY 9 Unmodified _VEIEYVEKY_ 0 0 0 ENST00000478869.1_1_2:203760778-203765795:-|nuORF;ENSG00000138442.10,WDR12,chr2,-,I9.1,202892703,202894580|50|9.45|2|intron;ENSG00000138442.10,WDR12,chr2,-,I9.1,202892703,202894580|50|9.45|1|intron;ENSG00000138442|ENST00000261015|WDR12 ENST00000478869.1_1_2:203760778-203765795:-|nuORF ENST00000478869.1_1_2:203760778-203765795:-|nuORF MSMS UPN46_class_I_Rep_3 1 586.2964477539062 2 586.297704 1170.58086 NaN NaN NaN NaN NaN NaN NaN 53.525 1 53.525 53.025 54.025 0 0 0 0 0.031346 1 11524 11524 43.982 17.641 1 46944 3089 29597 29611 54224 54224 0.0023886882945589605 VEIIDKII 8 Unmodified _VEIIDKII_ 0 0 0 REV__L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|34|3|sense REV__L1MC4_dup21592|chr17:31979129-31980011:-|1.3664962369799305|0.0536867072837349|4.67|151.0|34|3|sense MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 50.856 1 54.072 53.572 54.572 3.2163 0 0 0 0.40581 1 11271 11271 2.8892 0 1 + 46945 26877 29598 29612 54225 54225 0.10660699251184269 VEIKQHTL 8 Unmodified _VEIKQHTL_ 0 0 0 L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense;L1M4c_dup207|chr1:244399315-244399955:-|1.2738581542432277|0.0144202374847695|6.46|150.0|9|1|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 484.2820129394531 2 484.282192 966.549831 -0.29223 -0.00014152 0.28028 0.00013573 -0.011949 -5.7865E-06 484.28206357439063 35.239 0.50497 38.915 38.704 39.209 3.6762 79 33 3 0 0 0 0.82752 2 6450 6403;6450 15.847 0 1 127690 46946 9044 29599 29613 54226;54227 54227 0.06521760305861335 VEIKQHTL 8 Unmodified _VEIKQHTL_ 0 0 0 L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense;L1M4c_dup207|chr1:244399315-244399955:-|1.2738581542432277|0.0144202374847695|6.46|150.0|9|1|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.2813415527344 2 484.282192 966.549831 -0.17567 -8.5072E-05 0.45141 0.00021861 0.27574 0.00013354 484.28224485549583 35.46 0.66858 38.872 38.711 39.38 3.4114 87 42 3 0 0 0 0.82752 1 6524 6524 4.756 0 1 87975 46947 9044 29599 29613 54228 54228 0.06521760305861335 VEIKQHTL 8 Unmodified _VEIKQHTL_ 0 0 0 L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense;L1M4c_dup207|chr1:244399315-244399955:-|1.2738581542432277|0.0144202374847695|6.46|150.0|9|1|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 484.2818908691406 2 484.282192 966.549831 -0.41056 -0.00019883 0.88942 0.00043073 0.47886 0.0002319 484.2823126278686 35.764 0.65585 39.019 38.735 39.391 3.2547 82 42 3 0 0 0 0.82752 1 6650 6650 15.847 0 1 92708 46948 9044 29599 29613 54229 54229 0.06521760305861335 VEIQNIKI 8 Unmodified _VEIQNIKI_ 0 0 0 Ricksha_c_dup444|chr6:87183440-87185382:-|2.201915819738377|0.0246517884866167|6.48|151.0|22|2|sense Ricksha_c_dup444|chr6:87183440-87185382:-|2.201915819738377|0.0246517884866167|6.48|151.0|22|2|sense Ricksha_c_dup444|chr6:87183440-87185382:-|2.201915819738377|0.0246517884866167|6.48|151.0|22|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.7916259765625 2 478.792392 955.570232 0.071217 3.4098E-05 -0.46594 -0.00022309 -0.39473 -0.00018899 478.79202146127545 54.156 0.43139 57.725 57.45 57.881 3.5694 39 25 2 0 0 0 0.82752 1 11319 11319 6.7232 0 1 86774 46949 32837 29600 29614 54230 54230 0.0906693096563913 VEIQNIQI 8 Unmodified _VEIQNIQI_ 0 0 0 L1MB4_dup2459|chr5:70105128-70105690:+|2.9641722693486985|0.1534337338719923|4.27|151.0|16|2|sense L1MB4_dup2459|chr5:70105128-70105690:+|2.9641722693486985|0.1534337338719923|4.27|151.0|16|2|sense L1MB4_dup2459|chr5:70105128-70105690:+|2.9641722693486985|0.1534337338719923|4.27|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 478.7740783691406 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.332 1 70.595 70.095 71.095 3.2636 0 0 0 0.34217 1 16232 16232 24.021 2.4836 1 46950 10488 29601 29615 54231 54231 0.054300540689382615 VEIQNIQI 8 Unmodified _VEIQNIQI_ 0 0 0 L1MB4_dup2459|chr5:70105128-70105690:+|2.9641722693486985|0.1534337338719923|4.27|151.0|16|2|sense L1MB4_dup2459|chr5:70105128-70105690:+|2.9641722693486985|0.1534337338719923|4.27|151.0|16|2|sense L1MB4_dup2459|chr5:70105128-70105690:+|2.9641722693486985|0.1534337338719923|4.27|151.0|16|2|sense MSMS UPN47_class_I_Rep_3 4 478.77423095703125 2 478.7742 955.533846 NaN NaN NaN NaN NaN NaN NaN 67.261 1 70.453 69.953 70.953 3.1914 0 0 0 0.367 1 16274 16274 18.146 0 1 46951 10488 29601 29615 54232 54232 0.054300540689382615 VEIQSTHTKKA 11 Unmodified _VEIQSTHTKKA_ 0 0 0 REV__ENSG00000143365|ENST00000318247|RORC REV__ENSG00000143365|ENST00000318247|RORC MSMS UPN48_class_I_Rep_3 7 621.3482055664062 2 621.346052 1240.67755 NaN NaN NaN NaN NaN NaN NaN 40.194 1 43.844 43.344 44.344 3.6509 0 0 0 0.38417 1 7119 7119 2.086 0 1 + 46952 19441 29602 29616 54233 54233 0.0668385610920268 VEITNAYFE 9 Unmodified _VEITNAYFE_ 0 0 0 ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 543.2626953125 2 543.261122 1084.50769 0.41796 0.00022706 -0.062451 -3.3927E-05 0.35551 0.00019314 543.2609190961231 63.078 0.79757 66.437 66.121 66.918 3.3595 104 63 2 0 0 0 0.47197 1 15033 15033 3.5965 1.5367 1 270410 46953 6699 29603 29617 54234 54234 -0.03118259893199138 VEITNAYFE 9 Unmodified _VEITNAYFE_ 0 0 0 ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 543.2606811523438 2 543.261122 1084.50769 0.38399 0.00020861 0.0039412 2.1411E-06 0.38793 0.00021075 543.2610186910604 63.315 0.8504 66.571 66.176 67.026 3.2558 121 65 2 0 0 0 0.42249 1 15147 15147 6.7232 1.9672 1 340570 46954 6699 29603 29617 54235 54235 -0.03118259893199138 VEIWFVYLV 9 Unmodified _VEIWFVYLV_ 0 0 0 REV__L1ME1_dup25333|chr14:102678592-102679474:-|1.1972746731027966|0.0167960981543932|6.16|151.0|57|3|anti-sense REV__L1ME1_dup25333|chr14:102678592-102679474:-|1.1972746731027966|0.0167960981543932|6.16|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 584.3265380859375 2 584.326068 1166.63758 NaN NaN NaN NaN NaN NaN NaN 114.27 1 117.9 117.4 118.4 3.6301 0 0 0 0.39428 1 27778 27778 2.0598 0 1 + 46955 26226 29604 29618 54236 54236 0.06092961176591416 VEKEEDMIHF 10 Unmodified _VEKEEDMIHF_ 0 0 0 ENST00000371482.5_2_9:140343848-140347544:-|nuORF;nc|ENSG00000165802|Q6X4W1-4|NSMF;nc|ENSG00000165802|Q6X4W1-6|NSMF;nc|ENSG00000165802|Q6X4W1-3|NSMF;nc|ENSG00000165802|Q6X4W1-2|NSMF;ENSG00000165802|ENST00000371475|NSMF ENST00000371482.5_2_9:140343848-140347544:-|nuORF ENST00000371482.5_2_9:140343848-140347544:-|nuORF MSMS UPN47_class_I_Rep_3 4 638.798583984375 2 638.797546 1275.58054 NaN NaN NaN NaN NaN NaN NaN 40.904 1 44.141 43.641 44.641 3.2372 0 0 0 0.53105 1 8243 8243 3.2813 0.28607 1 46956 4204 29605 29619 54237 54237 -0.046228741620780056 VEKEFMYWV 9 Unmodified _VEKEFMYWV_ 0 0 0 REV__L1M5_dup2404|chr1:155390137-155390542:+|1.0659266236578069|0.005004599900735|7.73|151.0|15|3|sense REV__L1M5_dup2404|chr1:155390137-155390542:+|1.0659266236578069|0.005004599900735|7.73|151.0|15|3|sense MSMS UPN47_class_I_Rep_2 3 615.79931640625 2 615.796817 1229.57908 NaN NaN NaN NaN NaN NaN NaN 20.305 1 23.712 23.212 24.212 3.4074 0 0 0 0.40038 1 2082 2082 0.6015 0.076735 1 + 46957 24641 29606 29620 54238 54238 -0.026524634601855723 VEKISPRF 8 Unmodified _VEKISPRF_ 0 0 0 REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4 REV__nc|ENSG00000173064|Q9Y4D8-2|HECTD4 MSMS UPN47_class_I_Rep_1 2 488.28436279296875 2 488.284734 974.554916 NaN NaN NaN NaN NaN NaN NaN 22.931 1 26.635 26.135 27.135 3.7042 0 0 0 0.40625 1 2751 2751 2.3027 0 1 + 46958 20469 29607 29621 54239 54239 0.0666206416847217 VEKKMVHR 8 Unmodified _VEKKMVHR_ 0 0 0 nc|ENSG00000241553|P59998-2|ARPC4;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3 nc|ENSG00000241553|P59998-2|ARPC4 nc|ENSG00000241553|P59998-2|ARPC4 MSMS UPN46_class_I_Rep_3 1 513.4855346679688 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 101.82 1 101.82 101.32 102.32 0 0 0 0 0.40746 1 24842 24842 0.69038 0 1 46959 5609 29608 29622 54240 54240 0.06865215419247761 VEKKMVHR 8 Unmodified _VEKKMVHR_ 0 0 0 nc|ENSG00000241553|P59998-2|ARPC4;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3 nc|ENSG00000241553|P59998-2|ARPC4 nc|ENSG00000241553|P59998-2|ARPC4 MSMS UPN47_class_I_Rep_1 2 513.7985229492188 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 98.211 1 102 101.5 102.5 3.7861 0 0 0 0.40746 1 24315 24315 0.69038 0 1 46960 5609 29608 29622 54241 54241 0.06865215419247761 VEKKMVHR 8 Unmodified _VEKKMVHR_ 0 0 0 nc|ENSG00000241553|P59998-2|ARPC4;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3 nc|ENSG00000241553|P59998-2|ARPC4 nc|ENSG00000241553|P59998-2|ARPC4 MSMS UPN47_class_I_Rep_2 3 513.8065795898438 2 513.797486 1025.58042 NaN NaN NaN NaN NaN NaN NaN 95.893 1 99.368 98.868 99.868 3.4753 0 0 0 0.40746 1 23589 23589 0.69038 0 1 46961 5609 29608 29622 54242 54242 0.06865215419247761 VEKKVFGP 8 Unmodified _VEKKVFGP_ 0 0 0 nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3 nc|ENSG00000164342|O15455-2|TLR3 nc|ENSG00000164342|O15455-2|TLR3 MULTI-MSMS UPN46_class_I_Rep_3 1 452.2694396972656 2 452.268553 902.522553 0.06843 3.0949E-05 1.7945 0.00081158 1.8629 0.00084253 452.2693273314982 36.249 0.027103 36.249 36.238 36.265 0 6 2 3 0 0 0 0.82752 1 6701 6701 2.5775 0 1 806730 46962 4108 29609 29623 54243 54243 0.06739276765483737 VEKKYHLL 8 Unmodified _VEKKYHLL_ 0 0 0 REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 515.7736206054688 2 515.30821 1028.60187 0.16758 8.6355E-05 2.6846 0.0013834 2.8522 0.0014698 515.8111904119665 57.897 0.12078 61.188 61.137 61.258 3.2912 13 7 2 0 0 0 0.72333 1 13371 13371 7.9102 0 1 86989 + 46963 17699 29610 29624 54244 54244 0.08870923719609891 VEKKYHLL 8 Unmodified _VEKKYHLL_ 0 0 0 REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 515.30821 1028.60187 0.25715 0.00013251 2.9922 0.0015419 3.2494 0.0016744 515.3096419694115 57.38 0.058487 60.817 60.778 60.837 3.437 -0.18572 5.7142E-05 NaN 7.9102 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 57001 + 46964 17699 29610 29624 0.08870923719609891 VEKLFSSLL 9 Unmodified _VEKLFSSLL_ 0 0 0 REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|98|2|anti-sense REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|98|2|anti-sense MSMS UPN47_class_I_Rep_1 2 518.3084716796875 2 518.307875 1034.6012 NaN NaN NaN NaN NaN NaN NaN 109 1 112.6 112.1 113.1 3.6046 0 0 0 0.29868 1 26854 26854 10.824 0 1 + 46965 29300 29611 29625 54245 54245 0.08528084279919312 VEKNGIQIR 9 Unmodified _VEKNGIQIR_ 0 0 0 REV__L1MA4A_dup3952|chrX:155586243-155589165:+|1.1242072856726404|0.0482493123580715|4.54|151.0|43|2|sense REV__L1MA4A_dup3952|chrX:155586243-155589165:+|1.1242072856726404|0.0482493123580715|4.54|151.0|43|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 528.810791015625 2 528.811648 1055.60874 -0.11657 -6.1645E-05 0.44798 0.0002369 0.33141 0.00017525 528.811550024509 28.242 0.42448 32.008 31.843 32.267 3.7662 43 33 2 0 0 0 0.48846 1 4300 4300 1.8442 0 1 52963 + 46966 25296 29612 29626 54246 54246 0.08316236600194316 VEKNLKDKG 9 Unmodified _VEKNLKDKG_ 0 0 0 REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|140|2|anti-sense REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|140|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.7979736328125 2 515.798206 1029.58186 0.23718 0.00012234 -0.19866 -0.00010247 0.038518 1.9868E-05 515.7979799399764 28.808 0.54074 32.551 32.314 32.854 3.7424 73 60 2 0 0 0 0.43153 1 4001 4001 6.2058 0 1 80220 + 46967 23567 29613 29627 54247 54247 0.06825127988986424 VEKPTTSL 8 Unmodified _VEKPTTSL_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS UPN48_class_I_Rep_3 7 437.74755859375 2 437.74765 873.480748 0.044729 1.958E-05 -0.7291 -0.00031916 -0.68437 -0.00029958 437.7473187571266 33.58 0.31636 37.26 37.073 37.389 3.6797 43 32 2 0 0 0 0.82752 1 5226 5226 12.532 3.9383 1 64017 + 46968 20574 29614 29628 54248 54248 0.03894676286279264 VEKPTTSL 8 Unmodified _VEKPTTSL_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 437.74765 873.480748 0.10277 4.4988E-05 -1.3761 -0.00060238 -1.2733 -0.0005574 437.7474506305354 33.517 0.13018 37.177 37.096 37.226 3.6607 -0.041302 -0.00045712 NaN 12.532 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 45902 + 46969 20574 29614 29628 0.03894676286279264 VEKPVVLH 8 Unmodified _VEKPVVLH_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-SECPEP UPN47_class_I_Rep_1 2 460.7825012207031 2 460.781828 919.549102 0.20378 9.3898E-05 1.6372 0.00075439 1.841 0.00084829 460.7823803494732 110.73 0.18375 114.31 114.27 114.46 3.5835 47 21 3 0 0 0 0.72333 1 27304 27304 5.2307 0 1 753470 46970 2495 29615 29629 54249 54249 0.08610965656805547 VEKPVVLH 8 Unmodified _VEKPVVLH_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 460.781828 919.549102 0.21436 9.8773E-05 1.8816 0.00086701 2.096 0.00096578 460.7823899756284 114.59 0.042679 114.59 114.57 114.61 0 0.18309 0.00031142 NaN 5.2307 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 30611 46971 2495 29615 29629 0.08610965656805547 VEKPVVLH 8 Unmodified _VEKPVVLH_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 460.781828 919.549102 0.15014 6.9183E-05 1.4188 0.00065375 1.5689 0.00072293 460.7823936959873 110.82 0.1749 114.35 114.26 114.44 3.5271 -0.059062 -0.00011511 NaN 5.2307 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 522170 46972 2495 29615 29629 0.08610965656805547 VEKPVVLH 8 Unmodified _VEKPVVLH_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 460.781828 919.549102 -0.063444 -2.9234E-05 1.7443 0.00080375 1.6809 0.00077452 460.7824733331132 110.84 0.23434 114.37 114.32 114.55 3.529 -0.037977 0.0001849 NaN 5.2307 42 26 3 NaN NaN NaN NaN 0 NaN NaN 0 57705 46973 2495 29615 29629 0.08610965656805547 VEKPVVLH 8 Unmodified _VEKPVVLH_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 460.781828 919.549102 0.18532 8.5391E-05 1.2817 0.0005906 1.467 0.00067599 460.7823027763555 110.75 0.15662 114.42 114.38 114.54 3.6654 0.011541 -0.00024141 NaN 5.2307 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 65272 46974 2495 29615 29629 0.08610965656805547 VEKQIPWA 8 Unmodified _VEKQIPWA_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MSMS UPN47_class_I_Rep_2 3 485.7724914550781 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 24.054 1 27.519 27.019 28.019 3.4655 0 0 0 0.40738 1 3127 3127 0.79363 0 1 + 46975 21127 29616 29630 54250 54250 0.0423837527713431 VEKQIPWA 8 Unmodified _VEKQIPWA_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MSMS UPN48_class_I_Rep_1 5 485.7719421386719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 26.084 1 29.651 29.151 30.151 3.5667 0 0 0 0.40738 1 3144 3144 0.79363 0 1 + 46976 21127 29616 29630 54251 54251 0.0423837527713431 VEKQIPWA 8 Unmodified _VEKQIPWA_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MSMS UPN48_class_I_Rep_1 5 485.77166748046875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 33.453 1 36.973 36.473 37.473 3.5201 0 0 0 0.40738 1 5220 5220 0.79363 0 1 + 46977 21127 29616 29630 54252 54252 0.0423837527713431 VEKQIPWA 8 Unmodified _VEKQIPWA_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MSMS UPN48_class_I_Rep_3 7 485.77203369140625 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 25.029 1 28.798 28.298 29.298 3.769 0 0 0 0.40738 1 2986 2986 0.79363 0 1 + 46978 21127 29616 29630 54253 54253 0.0423837527713431 VEKREQLY 8 Unmodified _VEKREQLY_ 0 0 0 L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|85|3|sense L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|85|3|sense L1PREC2_dup5887|chr12:46746977-46749850:+|1.8459326690424012|0.0716331789946524|4.69|151.0|85|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 532.7736206054688 2 532.790381 1063.56621 0.16753 8.926E-05 0.23501 0.00012521 0.40254 0.00021447 532.7904439548571 44.79 0.89496 48.034 47.677 48.572 3.2441 130 55 3 0 0 0 0.82752 1 9564 9564 16.942 16.942 1 575040 46979 15476 29617 29631 54254 54254 0.03696841471969492 VEKRGKNH 8 Unmodified _VEKRGKNH_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|68|3|sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|68|3|sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|68|3|sense MSMS UPN47_class_I_Rep_2 3 484.27593994140625 2 484.275232 966.535912 NaN NaN NaN NaN NaN NaN NaN 27.514 1 31.012 30.512 31.512 3.4986 0 0 0 0.40604 1 4142 4142 2.5775 0 1 46980 13336 29618 29632 54255 54255 0.05130527597430046 VEKRIVQI 8 Unmodified _VEKRIVQI_ 0 0 0 REV__ENSG00000151929|ENST00000369085|BAG3 REV__ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS UPN47_class_I_Rep_2 3 492.8135986328125 2 492.813659 983.612765 -0.11477 -5.6561E-05 -1.009 -0.00049726 -1.1238 -0.00055382 492.8135314176947 36.998 0.62381 40.397 40.135 40.759 3.3988 67 47 2 0 0 0 0.82752 1 7074 7074 2.3027 0 1 92184 + 46981 19668 29619 29633 54256 54256 0.12030326093884014 VEKRTGRK 8 Unmodified _VEKRTGRK_ 0 0 0 nc|ENSG00000258597|P20848|SERPINA2 nc|ENSG00000258597|P20848|SERPINA2 nc|ENSG00000258597|P20848|SERPINA2 MSMS UPN46_class_I_Rep_3 1 487.2989807128906 2 487.298707 972.582862 NaN NaN NaN NaN NaN NaN NaN 86.701 1 86.701 86.201 87.201 0 0 0 0 0.40746 1 20734 20734 0.69038 0 1 46982 16844 29620 29634 54257 54257 0.09547387148575126 VEKSKIFKHI 10 Unmodified _VEKSKIFKHI_ 0 0 0 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 ENSG00000088205|ENST00000263239|DDX18 MULTI-MSMS UPN47_class_I_Rep_1 2 614.8748779296875 2 614.874248 1227.73394 0.54079 0.00033252 0.25849 0.00015894 0.79927 0.00049145 614.8743019321124 108.65 0.41454 112.29 112.16 112.58 3.6355 128 43 4 0 0 0 0.53004 1 26695 26695 8.1555 0 1 55475000 46983 1306 29621 29635 54258 54258 0.12918528736554435 VEKSVGLLF 9 Unmodified _VEKSVGLLF_ 0 0 0 REV__ENSG00000169330|ENST00000305428|MINAR1 REV__ENSG00000169330|ENST00000305428|MINAR1 MULTI-MSMS UPN46_class_I_Rep_3 1 496.29559326171875 2 496.294768 990.574983 0.12599 6.2527E-05 1.4398 0.00071459 1.5658 0.00077712 496.2954720110168 33.608 0.09507 33.608 33.595 33.69 0 11 6 3 0 0 0 0.48643 1 5902 5902 2.0598 0 1 508600 + 46984 20309 29622 29636 54259 54259 0.07931815108440787 VEKVIVKP 8 Unmodified _VEKVIVKP_ 0 0 0 REV__EVPL|p.E1265Rfs*5|1|0.11|ENSG00000167880|chr17:76009412-76009413|-/G|frameshift_variant REV__EVPL|p.E1265Rfs*5|1|0.11|ENSG00000167880|chr17:76009412-76009413|-/G|frameshift_variant MSMS UPN47_class_I_Rep_3 4 456.30126953125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 33.01 1 36.297 35.797 36.797 3.2867 0 0 0 0.40659 1 5835 5835 1.8442 0 1 + 46985 20242 29623 29637 54260 54260 0.1262842283365444 VEKVIVKP 8 Unmodified _VEKVIVKP_ 0 0 0 REV__EVPL|p.E1265Rfs*5|1|0.11|ENSG00000167880|chr17:76009412-76009413|-/G|frameshift_variant REV__EVPL|p.E1265Rfs*5|1|0.11|ENSG00000167880|chr17:76009412-76009413|-/G|frameshift_variant MSMS UPN48_class_I_Rep_3 7 456.30096435546875 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 43.922 1 47.561 47.061 48.061 3.6385 0 0 0 0.40501 1 8233 8233 3.9444 0 1 + 46986 20242 29623 29637 54261 54261 0.1262842283365444 VEKVNVFL 8 Unmodified _VEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 474.2820129394531 2 474.28166 946.548768 -0.16381 -7.7693E-05 1.5521 0.00073614 1.3883 0.00065845 474.2821883908305 23.029 0.080212 23.029 23.005 23.086 0 10 4 3 0 0 0 0.82752 1 2827 2827 2.0598 0 1 209310 46987 6953 29624 29638 54262 54262 0.07335545936962262 VEKVNVFL 8 Unmodified _VEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MSMS UPN46_class_I_Rep_3 1 474.2823791503906 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 40.956 1 40.956 40.456 41.456 0 0 0 0 0.40581 1 7986 7986 2.8892 0 1 46988 6953 29624 29638 54263 54263 0.07335545936962262 VEKVNVFL 8 Unmodified _VEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MSMS UPN47_class_I_Rep_1 2 474.28204345703125 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 112.56 1 116.13 115.63 116.63 3.572 0 0 0 0.4044 1 27749 27749 4.756 0 1 46989 6953 29624 29638 54264 54264 0.07335545936962262 VEKVNVFL 8 Unmodified _VEKVNVFL_ 0 0 0 ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF ENST00000475006.1_1_9:140262369-140269195:-|nuORF MSMS UPN48_class_I_Rep_2 6 474.2824401855469 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 110.07 1 113.74 113.24 114.24 3.669 0 0 0 0.40643 1 26204 26204 2.0598 0 1 46990 6953 29624 29638 54265 54265 0.07335545936962262 VELDRQLL 8 Unmodified _VELDRQLL_ 0 0 0 REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 493.28759765625 2 493.287474 984.560395 0.15964 7.8748E-05 0.45332 0.00022362 0.61296 0.00030237 493.2875282492438 62.521 0.50056 65.888 65.614 66.114 3.3673 48 28 2 0 0 0 0.82752 2 14736 14736;14778 24.021 0 1 70005 + 46991 18314 29625 29639 54266;54267 54266 0.06749742960300864 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.79193115234375 2 493.792058 985.569563 0.27 0.00013333 -0.016956 -8.3729E-06 0.25305 0.00012495 493.7919101375759 82.941 0.83914 86.61 86.232 87.071 3.669 241 106 3 0 0 0 0.35081 1 19640 19640 10.824 0 1 510560 46992 13865 29626 29640 54268 54268 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.7919006347656 2 493.792058 985.569563 0.27033 0.00013349 -0.11866 -5.8594E-05 0.15167 7.4895E-05 493.7918822488048 83.553 0.47588 87.234 87.048 87.524 3.6814 92 51 3 0 0 0 0.35081 1 19823 19823 10.824 0 1 296970 46993 13865 29626 29640 54269 54269 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 493.7921447753906 2 493.792058 985.569563 NaN NaN NaN NaN NaN NaN NaN 84.117 1 87.811 87.311 88.311 3.6937 0 0 0 0.29868 1 20016 20016 10.824 0 1 46994 13865 29626 29640 54270 54270 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 494.2235107421875 2 493.792058 985.569563 0.2704 0.00013352 0.079402 3.9208E-05 0.3498 0.00017273 493.79185895065007 84.216 0.1162 87.909 87.82 87.937 3.6937 17 13 2 0 0 0 0.11705 1 20036 20036 6.7232 0 1 85333 46995 13865 29626 29640 54271 54271 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.79180908203125 2 493.792058 985.569563 0.27674 0.00013665 -0.21139 -0.00010438 0.065347 3.2268E-05 493.79177854202123 82.934 0.40891 86.64 86.393 86.802 3.7066 91 53 2 0 0 0 0.35081 3 19619 19619;19648;19677 10.824 0 1 131290 46996 13865 29626 29640 54272;54273;54274 54272 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.79205322265625 2 493.792058 985.569563 0.27566 0.00013612 -0.11892 -5.8723E-05 0.15674 7.7397E-05 493.79190505588906 83.457 0.44031 87.185 86.823 87.263 3.7281 100 57 2 0 0 0 0.35081 2 19706 19706;19735 10.824 0 1 280800 46997 13865 29626 29640 54275;54276 54275 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.79217529296875 2 493.792058 985.569563 0.27511 0.00013585 -0.49941 -0.00024661 -0.2243 -0.00011076 493.791718757417 83.609 0.11062 87.337 87.263 87.374 3.7281 26 13 2 0 0 0 0.35081 1 19836 19836 10.824 0 1 249280 46998 13865 29626 29640 54277 54277 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.7920837402344 2 493.792058 985.569563 0.27429 0.00013544 -0.24545 -0.0001212 0.028845 1.4243E-05 493.79178898161564 83.99 0.28885 87.718 87.623 87.912 3.7281 47 34 2 0 0 0 0.35081 1 19906 19906 10.824 0 1 194040 46999 13865 29626 29640 54278 54278 0.07620091525961925 VELEAIILS 9 Unmodified _VELEAIILS_ 0 0 0 L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense;L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|83|2|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense L1PA14_dup641|chr3:138717534-138718921:-|2.338561255801892|0.0256456244246871|6.51|151.0|13|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 493.792058 985.569563 0.27459 0.00013559 -0.31629 -0.00015618 -0.041698 -2.059E-05 493.7917942913012 83.851 0.080185 87.579 87.543 87.623 3.7281 -0.16518 -7.6154E-05 NaN 6.7232 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 215640 47000 13865 29626 29640 0.07620091525961925 VELELERAKEV 11 Unmodified _VELELERAKEV_ 0 0 0 REV__Tigger1_dup6545|chr8:116860004-116860731:+|1.165972038824537|0.1201545116272564|3.28|150.0|9|2|sense REV__Tigger1_dup6545|chr8:116860004-116860731:+|1.165972038824537|0.1201545116272564|3.28|150.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 439.2481994628906 3 438.913637 1313.71908 -0.40677 -0.00017854 0.28475 0.00012498 -0.12202 -5.3556E-05 438.91373328931957 30.914 0.65698 34.646 34.365 35.022 3.7324 114 55 3 0 0 0 0.56006 1 5089 5089 6.2344 0.71106 1 167110 + 47001 32502 29627 29641 54279 54279 0.07476992077863542 VELENKKKL 9 Unmodified _VELENKKKL_ 0 0 0 REV__L1MD2_dup3242|chr5:142936147-142938264:+|2.428982886393188|0.0318680926499901|6.25|151.0|30|2|sense REV__L1MD2_dup3242|chr5:142936147-142938264:+|2.428982886393188|0.0318680926499901|6.25|151.0|30|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.8364868164062 2 550.837331 1099.66011 -0.33701 -0.00018564 0.082112 4.523E-05 -0.2549 -0.00014041 550.8374097716161 20.403 0.71572 23.752 23.447 24.163 3.3496 102 61 2 0 0 0 0.30034 1 2130 2130 13.906 0 1 76670 + 47002 27399 29628 29642 54280 54280 0.11426560574250288 VELEVLKL 8 Unmodified _VELEVLKL_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MSMS UPN47_class_I_Rep_2 3 471.79541015625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 45.955 1 49.309 48.809 49.809 3.3534 0 0 0 0.40404 1 9733 9733 5.2307 0 1 47003 2987 29629 29643 54281 54281 0.10660699251184269 VELFEKEYR 9 Unmodified _VELFEKEYR_ 0 0 0 REV__ENSG00000214102|ENST00000397541|WEE2 REV__ENSG00000214102|ENST00000397541|WEE2 MULTI-MSMS UPN47_class_I_Rep_3 4 405.2142639160156 3 404.880156 1211.61864 -1.1573 -0.00046856 0.15782 6.39E-05 -0.99947 -0.00040466 404.8804390665064 39.409 1.2022 42.647 42.349 43.551 3.238 136 79 2 0 0 0 0.36258 2 7729 7729;7879 10.151 0 1 128280 + 47004 21258 29630 29644 54282;54283 54282 0.02129379814891763 VELGHKWL 8 Unmodified _VELGHKWL_ 0 0 0 REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF MSMS UPN47_class_I_Rep_3 4 491.2785949707031 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 68.84 1 72.038 71.538 72.538 3.1977 0 0 0 0.40625 1 16751 16751 2.3027 0 1 + 47005 22032 29631 29645 54284 54284 0.053300815140460145 VELHPFPPF 9 Unmodified _VELHPFPPF_ 0 0 0 REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|91|1|anti-sense REV__L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|91|1|anti-sense MSMS UPN48_class_I_Rep_2 6 541.78857421875 2 541.78711 1081.55967 NaN NaN NaN NaN NaN NaN NaN 40.974 1 44.725 44.225 45.225 3.7508 0 0 0 0.36505 1 7436 7436 7.2892 1.0834 1 + 47006 26751 29632 29646 54285 54285 0.02214948311234366 VELKILFRAL 10 Unmodified _VELKILFRAL_ 0 0 0 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 MSMS UPN48_class_I_Rep_1 5 601.8375244140625 2 601.386991 1200.75943 NaN NaN NaN NaN NaN NaN NaN 74.468 1 77.958 77.458 78.458 3.49 0 0 0 0.53105 1 17598 17598 1.4819 0 1 + 47007 18769 29633 29647 54286 54286 0.16708003258986537 VELKILFRAL 10 Unmodified _VELKILFRAL_ 0 0 0 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 REV__nc|ENSG00000122970|Q8WYA0-3|IFT81 MSMS UPN48_class_I_Rep_2 6 601.388427734375 2 601.386991 1200.75943 NaN NaN NaN NaN NaN NaN NaN 83.681 1 87.362 86.862 87.862 3.6814 0 0 0 0.53105 1 19895 19895 1.4819 0 1 + 47008 18769 29633 29647 54287 54287 0.16708003258986537 VELKLPKI 8 Unmodified _VELKLPKI_ 0 0 0 REV__ENSG00000025796|ENST00000369002|SEC63 REV__ENSG00000025796|ENST00000369002|SEC63 MULTI-SECPEP UPN47_class_I_Rep_3 4 470.25042724609375 2 470.315503 938.616454 0.073697 3.4661E-05 -0.22053 -0.00010372 -0.14683 -6.9057E-05 470.31540554165207 51.119 1.2816 54.335 53.9 55.182 3.2163 99 65 2 0 0 0 0.72333 1 11257 11257 11.64 0 1 192380 + 47009 17620 29634 29648 54288 54288 0.14468995867730428 VELLKVKE 8 Unmodified _VELLKVKE_ 0 0 0 L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|15|2|sense L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|15|2|sense L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.302734375 2 479.302593 956.590633 0.085424 4.0944E-05 0.10485 5.0254E-05 0.19027 9.1198E-05 479.3025321266165 66.594 0.76231 69.952 69.656 70.418 3.3576 68 54 2 0 0 0 0.82752 1 16080 16080 10.824 0 1 210030 47010 13428 29635 29649 54289 54289 0.11060101625469088 VELLKVKE 8 Unmodified _VELLKVKE_ 0 0 0 L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|15|2|sense L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|15|2|sense L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.30255126953125 2 479.302593 956.590633 0.070449 3.3766E-05 0.12812 6.1409E-05 0.19857 9.5175E-05 479.30250589444404 66.799 0.85765 69.985 69.574 70.431 3.1853 113 66 3 0 0 0 0.82752 1 16208 16208 13.906 0 1 280940 47011 13428 29635 29649 54290 54290 0.11060101625469088 VELLNWLP 8 Unmodified _VELLNWLP_ 0 0 0 REV__HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|89|3|anti-sense REV__HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|89|3|anti-sense MSMS UPN47_class_I_Rep_1 2 492.2977294921875 2 492.28166 982.548768 NaN NaN NaN NaN NaN NaN NaN 41.015 1 44.687 44.187 45.187 3.6719 0 0 0 0.39996 1 8193 8193 7.9102 0 1 + 47012 23440 29636 29650 54291 54291 0.05679545936936847 VELLQLNSI 9 Unmodified _VELLQLNSI_ 0 0 0 REV__L1MEd_dup12524|chr9:130789110-130790033:+|1.3262517890393477|0.0301337793844736|5.46|150.0|54|2|anti-sense REV__L1MEd_dup12524|chr9:130789110-130790033:+|1.3262517890393477|0.0301337793844736|5.46|150.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 514.8033447265625 2 514.802957 1027.59136 NaN NaN NaN NaN NaN NaN NaN 67.294 1 70.655 70.155 71.155 3.3611 0 0 0 0.32573 1 16174 16174 9.3831 0 1 + 47013 28515 29637 29651 54292 54292 0.0786689627452688 VELLQPFKQ 9 Unmodified _VELLQPFKQ_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-SECPEP UPN48_class_I_Rep_2 6 550.7850952148438 2 551.318774 1100.623 0.50048 0.00027592 -0.26373 -0.0001454 0.23675 0.00013052 551.3184512674426 68.128 0.59219 71.637 71.339 71.931 3.5083 129 53 3 0 0 0 0.10699 1 15732 15732 15.847 0 1 261050 47014 5620 29638 29652 54293 54293 0.07670889028463534 VELLQPFKQ 9 Unmodified _VELLQPFKQ_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-SECPEP UPN48_class_I_Rep_3 7 550.7849731445312 2 551.318774 1100.623 0.4582 0.00025261 -0.18731 -0.00010327 0.27089 0.00014935 551.3184649597929 68.043 0.61082 71.551 71.26 71.871 3.5077 136 58 3 0 0 0 0.10699 1 15580 15580 15.847 0 1 317630 47015 5620 29638 29652 54294 54294 0.07670889028463534 VELLQPFKQ 9 Unmodified _VELLQPFKQ_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 551.318774 1100.623 0.43565 0.00024018 0.5541 0.00030548 0.98975 0.00054567 551.3189065496578 68.272 0.56927 71.47 71.205 71.774 3.1977 -0.016229 0.00062029 NaN 26.884 66 36 2 NaN NaN NaN NaN 0 NaN NaN 0 95255 47016 5620 29638 29652 0.07670889028463534 VELLSAKQS 9 Unmodified _VELLSAKQS_ 0 0 0 REV__ENST00000553724.1_1_14:104193947-104195573:+|nuORF REV__ENST00000553724.1_1_14:104193947-104195573:+|nuORF MSMS UPN48_class_I_Rep_1 5 487.7909240722656 2 487.779482 973.544411 NaN NaN NaN NaN NaN NaN NaN 75.681 1 79.18 78.68 79.68 3.4996 0 0 0 0.34878 1 17944 17944 8.1555 0.24537 1 + 47017 22977 29639 29653 54295 54295 0.056580367233777906 VELNKSHL 8 Unmodified _VELNKSHL_ 0 0 0 REV__L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|92|3|anti-sense REV__L1MC5a_dup14094|chr15:89250700-89252017:+|1.0369212129375518|0.0225099509594319|5.53|151.0|92|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 470.2663269042969 2 470.266542 938.51853 -0.33125 -0.00015578 0.11557 5.4348E-05 -0.21569 -0.00010143 470.26652464323325 23.43 0.70436 26.875 26.558 27.263 3.4447 127 66 3 0 0 0 0.82752 1 2925 2925 15.847 0 1 156120 + 47018 27127 29640 29654 54296 54296 0.0468118727176261 VELPKKLL 8 Unmodified _VELPKKLL_ 0 0 0 REV__ENSG00000113248|ENST00000231173|PCDHB15 REV__ENSG00000113248|ENST00000231173|PCDHB15 MULTI-MSMS UPN47_class_I_Rep_1 2 470.3157653808594 2 470.315503 938.616454 -0.025122 -1.1815E-05 -0.060267 -2.8345E-05 -0.085389 -4.016E-05 470.3153978583605 50.534 0.86184 54.162 53.78 54.642 3.6285 81 39 3 0 0 0 0.82752 1 11018 11018 14.838 0 1 309060 + 47019 18499 29641 29655 54297 54297 0.14468995867753165 VELPYPDLQE 10 Unmodified _VELPYPDLQE_ 0 0 0 ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2 ENST00000526301.5_1_1:110162158-110172443:+|nuORF ENST00000526301.5_1_1:110162158-110172443:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 601.8013916015625 2 601.800611 1201.58667 0.45608 0.00027447 0.98294 0.00059153 1.439 0.000866 601.8012203361426 42.794 0.53013 46.436 46.222 46.753 3.6415 50 41 2 0 0 0 0.56118 1 7846 7846 2.9952 1.151 1 129590 47020 2178 29642 29656 54298 54298 -0.006060326588794851 VELQQLFV 8 Unmodified _VELQQLFV_ 0 0 0 REV__ENSG00000145692|ENST00000274353|BHMT REV__ENSG00000145692|ENST00000274353|BHMT MSMS UPN47_class_I_Rep_3 4 488.27789306640625 2 488.279118 974.543683 NaN NaN NaN NaN NaN NaN NaN 82.478 1 85.815 85.315 86.315 3.337 0 0 0 0.39436 1 20670 20670 10.074 0 1 + 47021 19519 29643 29657 54299 54299 0.055392420743373805 VELRAARK 8 Unmodified _VELRAARK_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MSMS UPN47_class_I_Rep_1 2 471.7953796386719 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 33.95 1 37.648 37.148 38.148 3.6983 0 0 0 0.40604 1 6045 6045 2.5775 0 1 47022 3524 29644 29658 54300 54300 0.1039228863688777 VELRAARK 8 Unmodified _VELRAARK_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MSMS UPN47_class_I_Rep_2 3 471.79559326171875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 55.277 1 58.588 58.088 59.088 3.3102 0 0 0 0.40625 1 12564 12564 2.3027 0 1 47023 3524 29644 29658 54301 54301 0.1039228863688777 VELRAARK 8 Unmodified _VELRAARK_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MSMS UPN47_class_I_Rep_2 3 471.7952575683594 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 55.671 1 58.981 58.481 59.481 3.3102 0 0 0 0.40738 1 12684 12684 0.79363 0 1 47024 3524 29644 29658 54302 54302 0.1039228863688777 VELRAARK 8 Unmodified _VELRAARK_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MULTI-MSMS UPN47_class_I_Rep_3 4 471.7958068847656 2 471.795801 941.577048 -0.10636 -5.018E-05 -0.1053 -4.9681E-05 -0.21166 -9.9861E-05 471.79547226084213 58.856 0.56566 62.022 61.818 62.384 3.1658 42 32 2 0 0 0 0.82752 1 13819 13819 0.79363 0 1 383670 47025 3524 29644 29658 54303 54303 0.1039228863688777 VELRQIDKLR 10 Unmodified _VELRQIDKLR_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MSMS UPN48_class_I_Rep_3 7 635.3850708007812 2 635.385511 1268.75647 NaN NaN NaN NaN NaN NaN NaN 83.527 1 87.255 86.755 87.755 3.7281 0 0 0 0.53105 1 19804 19804 1.4819 0 1 47026 2265 29645 29659 54304 54304 0.132841281341598 VELTLAAVI 9 Unmodified _VELTLAAVI_ 0 0 0 REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron MULTI-MSMS UPN47_class_I_Rep_2 3 464.7892150878906 2 464.789318 927.564084 -0.021705 -1.0088E-05 -0.087252 -4.0554E-05 -0.10896 -5.0642E-05 464.78917157396825 63.332 0.48584 66.588 66.455 66.941 3.2558 55 38 2 0 0 0 0.28552 2 15009 15009;15058 14.838 0 1 112990 + 47027 17941 29646 29660 54305;54306 54305 0.09740412734117854 VELTLAAVI 9 Unmodified _VELTLAAVI_ 0 0 0 REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron REV__ENSG00000084110.11,HAL,chr12,-,I19.1,95978079,95980555|33|16.96|2|intron MULTI-MSMS UPN47_class_I_Rep_3 4 464.78863525390625 2 464.789318 927.564084 -0.10517 -4.8883E-05 -0.043297 -2.0124E-05 -0.14847 -6.9007E-05 464.78922175189916 63.339 0.51685 66.509 66.308 66.825 3.1698 50 40 2 0 0 0 0.21527 1 15120 15120 19.257 0 1 70288 + 47028 17941 29646 29660 54307 54307 0.09740412734117854 VELTLAYS 8 Unmodified _VELTLAYS_ 0 0 0 REV__L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|303|2|anti-sense REV__L1PA5_dup1898|chr3:60960426-60966566:-|4.223090094307692|0.0909260212448546|5.54|151.0|303|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 448.2418518066406 2 448.242201 894.469849 0.18032 8.0829E-05 -0.67643 -0.0003032 -0.49611 -0.00022238 448.2418893271271 100.61 0.028465 100.61 100.59 100.62 0 4 2 2 0 0 0 0.82752 1 24531 24531 9.3474 0 1 543130 + 47029 29724 29647 29661 54308 54308 0.018392739119917678 VELVLWAI 8 Unmodified _VELVLWAI_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|454|3|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|454|3|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|454|3|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7957763671875 2 471.786579 941.558604 NaN NaN NaN NaN NaN NaN NaN 58.004 1 61.441 60.941 61.941 3.437 0 0 0 0.40604 1 13360 13360 2.5775 0 1 47030 7998 29648 29662 54309 54309 0.08548733942302533 VELVRTAR 8 Unmodified _VELVRTAR_ 0 0 0 ENSG00000187553|ENST00000651965|CYP26C1 ENSG00000187553|ENST00000651965|CYP26C1 ENSG00000187553|ENST00000651965|CYP26C1 MULTI-MSMS UPN46_class_I_Rep_3 1 472.2877197265625 2 472.287808 942.561064 0.24595 0.00011616 -0.05371 -2.5367E-05 0.19224 9.0792E-05 472.28773165721674 89.943 0.54649 89.943 89.895 90.441 0 105 42 6 0 0 0 0.82752 1 21653 21653 7.9102 0 1 17200000 47031 5191 29649 29663 54310 54310 0.08748582399982752 VELVRTAR 8 Unmodified _VELVRTAR_ 0 0 0 ENSG00000187553|ENST00000651965|CYP26C1 ENSG00000187553|ENST00000651965|CYP26C1 ENSG00000187553|ENST00000651965|CYP26C1 MULTI-MSMS UPN47_class_I_Rep_1 2 472.2876892089844 2 472.287808 942.561064 0.18122 8.5587E-05 -0.05347 -2.5253E-05 0.12775 6.0333E-05 472.28771761839243 86.289 1.5919 89.905 89.439 91.031 3.6153 534 196 4 0 0 0 0.82752 1 21637 21637 2.3027 0 1 5200400 47032 5191 29649 29663 54311 54311 0.08748582399982752 VELWVSSV 8 Unmodified _VELWVSSV_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS UPN46_class_I_Rep_3 1 459.7502136230469 2 459.750193 917.485833 NaN NaN NaN NaN NaN NaN NaN 46.809 1 46.809 46.309 47.309 0 0 0 0 0.40604 1 9625 9625 2.5775 0 1 + 47033 18906 29650 29664 54312 54312 0.023789801489101592 VENECQILR 9 Unmodified _VENECQILR_ 0 0 0 REV__nc|ENSG00000116698|Q92540-5|SMG7 REV__nc|ENSG00000116698|Q92540-5|SMG7 MULTI-MSMS UPN48_class_I_Rep_2 6 552.7808227539062 2 552.279323 1102.54409 0.57945 0.00032002 0.050191 2.7719E-05 0.62964 0.00034774 552.2795330556199 54.05 1.1276 57.632 57.063 58.191 3.5817 205 75 4 0 0 0 0.47197 1 11272 11272 3.5965 3.5965 1 770510 + 47034 18612 29651 29665 54313 54313 -0.0030770626813136914 VENHKVFI 8 Unmodified _VENHKVFI_ 0 0 0 REV__Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|77|2|anti-sense REV__Tigger1_dup8073|chr10:58201211-58202392:+|1.1820345468553477|0.0943097078462676|3.65|150.0|77|2|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2769775390625 2 493.276909 984.539266 NaN NaN NaN NaN NaN NaN NaN 41.188 1 44.553 44.053 45.053 3.3655 0 0 0 0.40404 1 8276 8276 5.2307 0 1 + 47035 32534 29652 29666 54314 54314 0.04637777651419128 VENSSTLTSL 10 Unmodified _VENSSTLTSL_ 0 0 0 REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|57|3|sense REV__L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.7489013671875 2 525.769311 1049.52407 -0.31764 -0.00016701 1.2356 0.00064964 0.91795 0.00048263 525.7698310016782 27.348 0.54208 30.69 30.446 30.988 3.3422 84 46 2 0 0 0 0.56354 1 4084 4084 1.3295 0.13619 1 72700 + 47036 27377 29653 29667 54315 54315 0.001288212729150473 VENVTPWLR 9 Unmodified _VENVTPWLR_ 0 0 0 REV__ERVL-E-int_dup320|chr1:85807115-85808723:+|1.5553818194063278|0.0063679597323959|7.93|150.0|39|3|sense REV__ERVL-E-int_dup320|chr1:85807115-85808723:+|1.5553818194063278|0.0063679597323959|7.93|150.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 557.306884765625 2 557.306198 1112.59784 NaN NaN NaN NaN NaN NaN NaN 53.375 1 56.902 56.402 57.402 3.5278 0 0 0 0.3824 1 11953 11953 4.897 0.56777 1 + 47037 23280 29654 29668 54316 54316 0.04604834225892773 VEPIAPTLQ 9 Unmodified _VEPIAPTLQ_ 0 0 0 Tigger3c_dup412|chr3:37262975-37263284:+|1.146913072201844|0.050713946117168|4.5|151.0|15|1|anti-sense Tigger3c_dup412|chr3:37262975-37263284:+|1.146913072201844|0.050713946117168|4.5|151.0|15|1|anti-sense Tigger3c_dup412|chr3:37262975-37263284:+|1.146913072201844|0.050713946117168|4.5|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.27679443359375 2 484.276575 966.538597 -0.17714 -8.5787E-05 0.022888 1.1084E-05 -0.15426 -7.4703E-05 484.27654723977366 27.262 0.4766 30.761 30.529 31.006 3.4986 70 40 2 0 0 0 0.49187 1 4022 4022 1.4819 1.4819 1 89914 47038 33414 29655 29669 54317 54317 0.05398938211715176 VEPKKTEV 8 Unmodified _VEPKKTEV_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS UPN47_class_I_Rep_3 4 465.2704162597656 2 465.26875 928.522947 -0.012606 -5.8653E-06 0.19939 9.2768E-05 0.18678 8.6903E-05 465.27037302146215 99.894 0.56068 103.34 103.11 103.67 3.4483 180 71 4 0 0 0 0.82752 1 24651 24651 2.3027 0 1 1143700 + 47039 18580 29656 29670 54318 54318 0.05582651694669494 VEPKLCDV 8 Unmodified _VEPKLCDV_ 0 0 0 REV__AluJr_dup52552|chr11:68474044-68474345:-|1.1160191640184918|0.0448141938643746|4.64|151.0|7|2|sense REV__AluJr_dup52552|chr11:68474044-68474345:-|1.1160191640184918|0.0448141938643746|4.64|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 451.7347717285156 2 451.736228 901.457904 NaN NaN NaN NaN NaN NaN NaN 99.866 1 103.31 102.81 103.81 3.4483 0 0 0 0.40625 1 24681 24681 2.3027 1.5091 1 + 47040 17041 29657 29671 54319 54319 0.0032333389716541205 VEPLEAIQL 9 Unmodified _VEPLEAIQL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-SECPEP UPN48_class_I_Rep_1 5 506.79132080078125 2 506.289682 1010.56481 0.24688 0.00012499 -1.0258 -0.00051936 -0.77895 -0.00039437 506.2889435467282 75.963 0.49354 79.463 79.162 79.656 3.4996 68 52 2 0 0 0 0.12157 1 18079 18079 6.2058 0.47393 1 124720 47041 4671 29658 29672 54320 54320 0.059952073831937014 VEPPWPLL 8 Unmodified _VEPPWPLL_ 0 0 0 REV__AluJr4_dup9520|chr8:73860853-73861140:+|1.6457835896895745|0.0114937791951774|7.16|151.0|23|3|anti-sense REV__AluJr4_dup9520|chr8:73860853-73861140:+|1.6457835896895745|0.0114937791951774|7.16|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_2 3 475.7565002441406 2 475.770929 949.527304 NaN NaN NaN NaN NaN NaN NaN 33.911 1 37.351 36.851 37.851 3.4398 0 0 0 0.40581 1 6067 6067 2.8892 0 1 + 47042 16957 29659 29673 54321 54321 0.05052160908223868 VEPRLKGN 8 Unmodified _VEPRLKGN_ 0 0 0 L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|23|2|sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|23|2|sense L1MC4_dup19229|chr14:39081521-39083151:+|1.186827389852816|0.0625571935694606|4.25|151.0|23|2|sense MSMS UPN47_class_I_Rep_3 4 456.7681884765625 2 456.766709 911.518865 NaN NaN NaN NaN NaN NaN NaN 100.84 1 104.3 103.8 104.8 3.4671 0 0 0 0.40625 1 24890 24890 2.3027 0 1 47043 11429 29660 29674 54322 54322 0.05956606991617264 VEPTCTCFTC 10 Unmodified _VEPTCTCFTC_ 0 0 0 REV__L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|123|2|sense REV__L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|123|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.214111328125 2 552.213946 1102.41334 0.3849 0.00021254 0.6446 0.00035595 1.0295 0.0005685 552.214141310308 49.087 0.65169 52.434 52.132 52.784 3.3465 65 45 2 0 0 0 0.56333 1 10723 10723 1.4819 0 1 78822 + 47044 29965 29661 29675 54323 54323 -0.13377181302826102 VEPTLHSLY 9 Unmodified _VEPTLHSLY_ 0 0 0 L1MD3_dup2899|chrX:73970859-73971301:-|1.067119585053012|0.1299984246803501|3.04|151.0|21|1|anti-sense L1MD3_dup2899|chrX:73970859-73971301:-|1.067119585053012|0.1299984246803501|3.04|151.0|21|1|anti-sense L1MD3_dup2899|chrX:73970859-73971301:-|1.067119585053012|0.1299984246803501|3.04|151.0|21|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 529.7951049804688 2 529.779482 1057.54441 0.32856 0.00017406 -0.58351 -0.00030913 -0.25495 -0.00013507 529.7792257477004 56.853 0.80691 60.311 59.981 60.788 3.4572 130 70 2 0 0 0 0.11425 1 12939 12939 7.9102 0 1 379680 47045 12070 29662 29676 54324 54324 0.017940367233904908 VEPTLHSLY 9 Unmodified _VEPTLHSLY_ 0 0 0 L1MD3_dup2899|chrX:73970859-73971301:-|1.067119585053012|0.1299984246803501|3.04|151.0|21|1|anti-sense L1MD3_dup2899|chrX:73970859-73971301:-|1.067119585053012|0.1299984246803501|3.04|151.0|21|1|anti-sense L1MD3_dup2899|chrX:73970859-73971301:-|1.067119585053012|0.1299984246803501|3.04|151.0|21|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 529.779482 1057.54441 0.30522 0.0001617 -0.26347 -0.00013958 0.041749 2.2118E-05 529.7793771296009 57.263 0.8931 60.431 60.117 61.011 3.1681 0.045047 0.0001186 NaN 7.9102 173 80 3 NaN NaN NaN NaN 0 NaN NaN 0 393230 47046 12070 29662 29676 0.017940367233904908 VEPYFHIL 8 Unmodified _VEPYFHIL_ 0 0 0 L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|100|2|anti-sense L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|100|2|anti-sense L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|100|2|anti-sense MSMS UPN47_class_I_Rep_2 3 509.27154541015625 2 509.273835 1016.53312 NaN NaN NaN NaN NaN NaN NaN 60.413 1 63.678 63.178 64.178 3.2654 0 0 0 0.38221 1 14134 14134 14.582 0 1 47047 15347 29663 29677 54325 54325 0.025512594198971783 VEQATLRIS 9 Unmodified _VEQATLRIS_ 0 0 0 ENSG00000162618|ENST00000370742|ADGRL4 ENSG00000162618|ENST00000370742|ADGRL4 ENSG00000162618|ENST00000370742|ADGRL4 MULTI-MSMS UPN47_class_I_Rep_1 2 509.3048400878906 2 508.790381 1015.56621 0.16472 8.3807E-05 -0.010144 -5.1611E-06 0.15457 7.8645E-05 508.79008419385434 53.787 0.54768 57.315 57.048 57.596 3.5278 48 33 2 0 0 0 0.37599 1 12105 12105 9.3831 0 1 113760 47048 3945 29664 29678 54326 54326 0.059048414719427456 VEQGKVSVTV 10 Unmodified _VEQGKVSVTV_ 0 0 0 REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29 REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29 MSMS UPN46_class_I_Rep_3 1 523.2981567382812 2 523.298039 1044.58152 NaN NaN NaN NaN NaN NaN NaN 51.334 1 51.334 50.834 51.834 0 0 0 0 0.53105 1 10904 10904 7.1017 0 1 + 47049 19332 29665 29679 54327 54327 0.061017082691250835 VEQGKVSVTV 10 Unmodified _VEQGKVSVTV_ 0 0 0 REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29 REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29 MULTI-MSMS UPN47_class_I_Rep_1 2 523.2978515625 2 523.298039 1044.58152 0.048311 2.5281E-05 -0.062787 -3.2856E-05 -0.014476 -7.575E-06 523.297931600163 45.909 0.75236 49.608 49.258 50.011 3.6999 103 43 3 0 0 0 0.48801 1 9657 9657 12.873 2.0731 1 305580 + 47050 19332 29665 29679 54328 54328 0.061017082691250835 VEQKEPDL 8 Unmodified _VEQKEPDL_ 0 0 0 REV__ENST00000487493.1_1_1:26107225-26110277:+|nuORF REV__ENST00000487493.1_1_1:26107225-26110277:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 479.2475280761719 2 479.248015 956.481476 -0.41716 -0.00019992 -0.26592 -0.00012744 -0.68308 -0.00032737 479.24782892587126 39.045 0.71382 42.283 41.999 42.713 3.2379 85 49 2 0 0 0 0.82752 1 7591 7591 6.2058 0 1 171990 + 47051 22609 29666 29680 54329 54329 0.001494709353323742 VEQKFPST 8 Unmodified _VEQKFPST_ 0 0 0 REV__ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|5|intron REV__ENSG00000132359.15,RAP1GAP2,chr17,+,I22.1,3020596,3026007|38|9.52|5|intron MSMS UPN48_class_I_Rep_1 5 468.2459411621094 2 468.245275 934.475997 NaN NaN NaN NaN NaN NaN NaN 74.855 1 78.345 77.845 78.845 3.49 0 0 0 0.40604 1 17707 17707 2.5775 0 1 + 47052 19009 29667 29681 54330 54330 0.006137921435311 VEQNTLQEF 9 Unmodified _VEQNTLQEF_ 0 0 0 ENST00000319041.6_1_1:26607416-26607611:+|nuORF;ENSG00000142669|ENST00000270792|SH3BGRL3 ENST00000319041.6_1_1:26607416-26607611:+|nuORF ENST00000319041.6_1_1:26607416-26607611:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.2701416015625 2 554.269478 1106.5244 NaN NaN NaN NaN NaN NaN NaN 49.855 1 53.514 53.014 54.014 3.6592 0 0 0 0.3824 1 10881 10881 4.897 0 1 47053 3258 29668 29682 54331 54331 -0.024597590072289677 VEQTAKSL 8 Unmodified _VEQTAKSL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 438.24493408203125 2 438.245275 874.475997 -0.41191 -0.00018052 0.11965 5.2434E-05 -0.29226 -0.00012808 438.24529883625195 29.994 0.52114 33.739 33.504 34.025 3.7449 57 36 2 0 0 0 0.82752 3 4859 4817;4859;4874 14.838 0 1 92309 47054 963 29669 29683 54332;54333;54334 54333 0.03373792143531773 VEQTAKSL 8 Unmodified _VEQTAKSL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS UPN47_class_I_Rep_2 3 438.2448425292969 2 438.245275 874.475997 -0.71859 -0.00031492 0.37627 0.0001649 -0.34233 -0.00015002 438.2454395557437 30.145 0.54169 33.627 33.35 33.891 3.4821 62 44 2 0 0 0 0.82752 2 4908 4908;4944 10.074 0 1 73131 47055 963 29669 29683 54335;54336 54335 0.03373792143531773 VEQTAKSL 8 Unmodified _VEQTAKSL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 438.2454833984375 2 438.245275 874.475997 -0.9951 -0.0004361 0.72425 0.0003174 -0.27085 -0.0001187 438.2455527782499 30.296 0.58772 33.608 33.286 33.873 3.3116 74 47 2 0 0 0 0.82752 1 4988 4988 14.838 0 1 71219 47056 963 29669 29683 54337 54337 0.03373792143531773 VEQTAKSL 8 Unmodified _VEQTAKSL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 438.245275 874.475997 -0.71859 -0.00031492 0.37627 0.0001649 -0.34233 -0.00015002 438.2454395557437 30.145 0.54169 33.627 33.35 33.891 3.4821 -0.031109 -2.6904E-05 NaN 14.838 62 44 2 NaN NaN NaN NaN 0 NaN NaN 0 73131 47057 963 29669 29683 0.03373792143531773 VEQTAKSL 8 Unmodified _VEQTAKSL_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 438.245275 874.475997 -0.9951 -0.0004361 0.72425 0.0003174 -0.27085 -0.0001187 438.2455527782499 30.296 0.58772 33.608 33.286 33.873 3.3116 -0.050182 0.0002781 NaN 14.838 74 47 2 NaN NaN NaN NaN 0 NaN NaN 0 71219 47058 963 29669 29683 0.03373792143531773 VEQWPLKGK 9 Unmodified _VEQWPLKGK_ 0 0 0 HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|73|3|sense HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|73|3|sense HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|73|3|sense MSMS UPN47_class_I_Rep_2 3 542.771484375 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 34.013 1 37.453 36.953 37.953 3.4398 0 0 0 0.39518 1 6098 6098 1.8442 0 1 47059 8295 29670 29684 54338 54338 0.06922022231265146 VERESVYL 8 Unmodified _VERESVYL_ 0 0 0 L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|3|1|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|3|1|sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.76385498046875 2 497.763832 993.513111 0.29883 0.00014875 -0.18039 -8.9791E-05 0.11844 5.8956E-05 497.76363741793415 52.282 0.55676 55.488 55.119 55.676 3.2055 72 37 3 0 0 0 0.82752 1 11681 11681 10.824 0.75 1 133470 47060 8562 29671 29685 54339 54339 0.01609463689283075 VERFVWLH 8 Unmodified _VERFVWLH_ 0 0 0 REV__ENST00000471498.5_1_1:28319976-28320051:-|nuORF REV__ENST00000471498.5_1_1:28319976-28320051:-|nuORF MSMS UPN48_class_I_Rep_1 5 543.3005981445312 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 67.048 1 70.499 69.999 70.999 3.4516 0 0 0 0.40625 1 15378 15378 2.3027 0 1 + 47061 22504 29672 29686 54340 54340 0.042891727796586565 VERILIQAVER 11 Unmodified _VERILIQAVER_ 0 0 0 REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF REV__ENST00000507229.5_1_1:1551767-1563881:+|nuORF MSMS UPN47_class_I_Rep_3 4 442.5995788574219 3 442.601504 1324.78268 NaN NaN NaN NaN NaN NaN NaN 47.886 1 51.126 50.626 51.626 3.2405 0 0 0 0.38417 1 10363 10363 1.1098 0 1 + 47062 22719 29673 29687 54341 54341 0.1332839730566775 VERLIEAF 8 Unmodified _VERLIEAF_ 0 0 0 ENSG00000120645|ENST00000538872|IQSEC3;nc|ENSG00000120645|Q9UPP2-2|IQSEC3;nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000124313|Q5JU85-3|IQSEC2;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000124313|ENST00000642864|IQSEC2;ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000120645|ENST00000538872|IQSEC3;ENSG00000124313|ENST00000642864|IQSEC2;ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000120645|ENST00000538872|IQSEC3 MSMS UPN46_class_I_Rep_3 1 488.7762451171875 2 488.776742 975.538931 NaN NaN NaN NaN NaN NaN NaN 60.357 1 60.357 59.857 60.857 0 0 0 0 0.34217 1 13385 13385 24.021 2.2739 1 47063 2330;2460;3369 29674 29688 54342 54342 0.05018357931578521 VERLISPQLP 10 Unmodified _VERLISPQLP_ 0 0 0 REV__ENST00000461116.1_1_7:44157158-44161472:-|nuORF REV__ENST00000461116.1_1_7:44157158-44161472:-|nuORF MSMS UPN47_class_I_Rep_1 2 576.3433227539062 2 576.342781 1150.67101 NaN NaN NaN NaN NaN NaN NaN 108.66 1 112.29 111.79 112.79 3.6355 0 0 0 0.53105 1 26715 26715 4.897 0 1 + 47064 18332 29675 29689 54343 54343 0.10169962948543798 VERLKELI 8 Unmodified _VERLKELI_ 0 0 0 L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|1|1|sense L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|1|1|sense L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 500.3141784667969 2 500.313492 998.612431 NaN NaN NaN NaN NaN NaN NaN 73.661 1 76.966 76.466 77.466 3.3048 0 0 0 0.40746 1 18123 18123 0.69038 0 1 47065 8643 29676 29690 54344 54344 0.1130690637405678 VERLKELIK 9 Unmodified _VERLKELIK_ 0 0 0 L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|1|1|sense L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|1|1|sense L1M1_dup8860|chr18:20996620-20997836:+|2.474738868648004|0.0770339401637432|5.01|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 564.3588256835938 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 66.37 1 69.821 69.321 70.321 3.4516 0 0 0 0.39518 1 15172 15172 1.8442 0 1 47066 8643 29677 29691 54345 54345 0.14910839845242663 VERLLGKR 8 Unmodified _VERLLGKR_ 0 0 0 REV__ENST00000479019.5_1_2:189356176-189356311:+|nuORF REV__ENST00000479019.5_1_2:189356176-189356311:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.8114318847656 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.145 1 73.516 73.016 74.016 3.3713 0 0 0 0.40746 1 17032 17032 0.69038 0 1 + 47067 22553 29678 29692 54346 54346 0.12232861671009232 VERLLLGV 8 Unmodified _VERLLLGV_ 0 0 0 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 MSMS UPN47_class_I_Rep_3 4 449.7898864746094 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 86.956 1 90.336 89.836 90.836 3.3801 0 0 0 0.40738 1 21791 21791 0.79363 0 1 + 47068 17989 29679 29693 54347 54347 0.1118725217387464 VERLTDLL 8 Unmodified _VERLTDLL_ 0 0 0 REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1 REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS UPN48_class_I_Rep_3 7 479.7819519042969 2 479.782025 957.549496 0.1089 5.2251E-05 0.01618 7.7628E-06 0.12508 6.0013E-05 479.78196923381535 55.723 0.50029 59.278 59.012 59.512 3.5554 55 34 2 0 0 0 0.82752 1 11819 11819 10.824 0 1 183970 + 47069 19750 29680 29694 54348 54348 0.06902340586009359 VERPVMIL 8 Unmodified _VERPVMIL_ 0 0 0 REV__ENSG00000169594|ENST00000345382|BNC1 REV__ENSG00000169594|ENST00000345382|BNC1 MSMS UPN48_class_I_Rep_2 6 478.7919616699219 2 478.783513 955.552473 NaN NaN NaN NaN NaN NaN NaN 54.187 1 57.769 57.269 58.269 3.5817 0 0 0 0.39819 1 11429 11429 8.5933 0 1 + 47070 20318 29681 29695 54349 54349 0.07291892439172898 VERRKLLG 8 Unmodified _VERRKLLG_ 0 0 0 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 REV__nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN48_class_I_Rep_3 7 485.8123779296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 67.915 1 71.423 70.923 71.923 3.5077 0 0 0 0.40738 1 15540 15540 0.79363 0 1 + 47071 21014 29682 29696 54350 54350 0.12232861671009232 VERRRRWRFR 10 Unmodified _VERRRRWRFR_ 0 0 0 REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|173|3|anti-sense REV__HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|173|3|anti-sense MSMS UPN48_class_I_Rep_1 5 506.3009948730469 3 506.299265 1515.87596 NaN NaN NaN NaN NaN NaN NaN 87.657 1 91.276 90.776 91.776 3.6187 0 0 0 0.53105 1 21009 21009 0.15932 0.064481 1 + 47072 23730 29683 29697 54351 54351 0.13866179322076277 VESEADILHY 10 Unmodified _VESEADILHY_ 0 0 0 REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK MULTI-MSMS UPN47_class_I_Rep_2 3 588.28271484375 2 588.282586 1174.55062 0.51966 0.00030571 0.074011 4.354E-05 0.59367 0.00034925 588.2826197205549 58.456 0.61855 61.738 61.41 62.029 3.2818 62 34 3 0 0 0 0.52083 1 13546 13546 9.3831 0 1 169170 + 47073 18785 29684 29698 54352 54352 -0.029674898357598067 VESFLVHPGDL 11 Unmodified _VESFLVHPGDL_ 0 0 0 ENST00000397090.4_1_8:38287194-38314994:-|nuORF;nc|ENSG00000077782|P11362-15|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1 ENST00000397090.4_1_8:38287194-38314994:-|nuORF ENST00000397090.4_1_8:38287194-38314994:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 404.87982177734375 3 404.880156 1211.61864 -1.0024 -0.00040584 0.59674 0.00024161 -0.40563 -0.00016423 404.88036930226906 39.359 0.94605 42.737 42.296 43.242 3.3785 113 54 3 0 0 0 0.6724 1 7871 7871 1.2148 0.021489 1 117090 47074 1178 29685 29699 54353 54353 0.021293798149145005 VESGTLYMEE 10 Unmodified _VESGTLYMEE_ 0 0 0 REV__ENSG00000173210|ENST00000309868|ABLIM3 REV__ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS UPN47_class_I_Rep_1 2 579.2548828125 2 579.255179 1156.49581 0.027992 1.6215E-05 0.50645 0.00029336 0.53444 0.00030958 579.2551062908807 42.869 0.75427 46.556 46.283 47.038 3.6875 119 53 3 0 0 0 0.56078 1 8750 8750 3.2813 0 1 205910 + 47075 20477 29686 29700 54354 54354 -0.07618244698687704 VESGTLYMEE 10 Unmodified _VESGTLYMEE_ 0 0 0 REV__ENSG00000173210|ENST00000309868|ABLIM3 REV__ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS UPN47_class_I_Rep_2 3 579.25537109375 2 579.255179 1156.49581 0.12503 7.2427E-05 0.56249 0.00032583 0.68752 0.00039825 579.2551382438546 43.142 0.86829 46.5 46.238 47.107 3.358 118 56 3 0 0 0 0.56333 1 8850 8850 1.4819 0 1 166970 + 47076 20477 29686 29700 54355 54355 -0.07618244698687704 VESGTLYMEE 10 Unmodified _VESGTLYMEE_ 0 0 0 REV__ENSG00000173210|ENST00000309868|ABLIM3 REV__ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS UPN47_class_I_Rep_3 4 579.2556762695312 2 579.255179 1156.49581 0.13684 7.9265E-05 0.080429 4.6589E-05 0.21727 0.00012585 579.2552031639999 43.322 1.0006 46.564 46.24 47.241 3.2419 103 60 2 0 0 0 0.56078 2 8964 8964;9048 3.2813 0 1 184870 + 47077 20477 29686 29700 54356;54357 54356 -0.07618244698687704 VESHFDLEL 9 Unmodified _VESHFDLEL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.A687P|1|0.63|ENSG00000174231|chr17:1677098-1677098|C/G|missense_variant ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_2 6 544.7669067382812 2 544.766571 1087.51859 0.5627 0.00030654 0.097136 5.2916E-05 0.65984 0.00035946 544.766525952235 59.678 0.55623 63.165 62.887 63.443 3.4868 70 42 2 0 0 0 0.28552 1 13130 13130 14.838 4.0143 1 208610 47078 4671 29687 29701 54358 54358 -0.021668575189096373 VESHFDLEL 9 Unmodified _VESHFDLEL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.A687P|1|0.63|ENSG00000174231|chr17:1677098-1677098|C/G|missense_variant ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_3 7 544.7667236328125 2 544.766571 1087.51859 0.45991 0.00025054 0.084261 4.5902E-05 0.54417 0.00029645 544.7665853320227 59.537 0.50455 63.054 62.857 63.362 3.5169 54 39 2 0 0 0 0.11683 1 13026 13026 30.637 7.4881 1 171210 47079 4671 29687 29701 54359 54359 -0.021668575189096373 VESIKQIKL 9 Unmodified _VESIKQIKL_ 0 0 0 REV__AluSz6_dup37532|chr15:90894787-90895090:+|1.3507047675080268|0.3651668018429985|1.89|151.0|7|2|sense REV__AluSz6_dup37532|chr15:90894787-90895090:+|1.3507047675080268|0.3651668018429985|1.89|151.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.3344116210938 2 529.334424 1056.6543 0.47972 0.00025393 -0.21018 -0.00011125 0.26954 0.00014268 529.3341699134611 53.191 0.724 56.801 56.546 57.27 3.6098 107 46 3 0 0 0 0.43153 1 11085 11085 6.2058 0 1 369330 + 47080 17232 29688 29702 54360 54360 0.12823462062556246 VESKNIPSQ 9 Unmodified _VESKNIPSQ_ 0 0 0 REV__LTR36_dup56|chr2:46974089-46974706:-|1.5565248837025023|0.1379737649998659|3.5|151.0|37|3|anti-sense REV__LTR36_dup56|chr2:46974089-46974706:-|1.5565248837025023|0.1379737649998659|3.5|151.0|37|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 501.2506408691406 2 501.266739 1000.51892 0.26986 0.00013527 0.56296 0.00028219 0.83282 0.00041746 501.76695717460575 71.918 0.035835 71.918 71.894 71.93 0 5 3 2 0 0 0 0.12099 1 16591 16591 6.7232 1.4925 1 39081 + 47081 30908 29689 29703 54361 54361 0.01868562200957058 VESLTTFHQY 10 Unmodified _VESLTTFHQY_ 0 0 0 REV__L1MDb_dup816|chr11:14784200-14784698:+|1.1492057069801669|0.0514451676890317|4.48|151.0|35|3|anti-sense REV__L1MDb_dup816|chr11:14784200-14784698:+|1.1492057069801669|0.0514451676890317|4.48|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 612.7985229492188 2 612.798403 1223.58225 0.35159 0.00021545 -0.27655 -0.00016947 0.075033 4.598E-05 612.7982183596573 58.118 0.6464 61.287 61.011 61.657 3.1681 56 40 2 0 0 0 0.56354 1 13575 13575 1.3295 0.72803 1 74786 + 47082 27555 29690 29704 54362 54362 -0.020594970817910507 VESNHHLY 8 Unmodified _VESNHHLY_ 0 0 0 REV__L1MC3_dup4283|chr5:150754976-150755960:+|2.553491951541562|0.0789223687741001|5.02|151.0|26|2|sense REV__L1MC3_dup4283|chr5:150754976-150755960:+|2.553491951541562|0.0789223687741001|5.02|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.7373962402344 2 499.738148 997.461744 -0.2805 -0.00014018 0.50837 0.00025405 0.22787 0.00011388 499.73830651858657 26.434 0.83766 30.196 29.971 30.808 3.7624 180 73 3 0 0 0 0.82752 1 3933 3933 7.9102 0 1 243690 + 47083 26744 29691 29705 54363 54363 -0.0370886028475752 VESTVRIT 8 Unmodified _VESTVRIT_ 0 0 0 REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF MSMS UPN47_class_I_Rep_3 4 452.757080078125 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 17.557 1 20.916 20.416 21.416 3.3581 0 0 0 0.40738 1 1305 1305 0.79363 0 1 + 47084 19260 29692 29706 54364 54364 0.04693481034848901 VESTVRIT 8 Unmodified _VESTVRIT_ 0 0 0 REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF MSMS UPN47_class_I_Rep_3 4 452.75653076171875 2 452.758549 903.502546 NaN NaN NaN NaN NaN NaN NaN 17.737 1 21.095 20.595 21.595 3.3581 0 0 0 0.40738 1 1348 1348 0.79363 0 1 + 47085 19260 29692 29706 54365 54365 0.04693481034848901 VESVFAAGTEL 11 Unmodified _VESVFAAGTEL_ 0 0 0 REV__ENST00000464057.5_1_6:4126367-4135774:-|nuORF REV__ENST00000464057.5_1_6:4126367-4135774:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 561.7879028320312 2 561.787504 1121.56045 0.37192 0.00020894 0.42783 0.00024035 0.79975 0.00044929 561.7878261000398 64.522 0.50188 67.878 67.61 68.112 3.3557 81 53 2 0 0 0 0.2728 1 15368 15368 20.415 3.3016 1 277540 + 47086 22456 29693 29707 54366 54366 0.0045369816962193 VESVKNSL 8 Unmodified _VESVKNSL_ 0 0 0 L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|41|2|sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|41|2|sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|41|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.24505615234375 2 438.245275 874.475997 -0.41191 -0.00018052 0.11965 5.2434E-05 -0.29226 -0.00012808 438.24529883625195 29.994 0.52114 33.739 33.504 34.025 3.7449 57 36 2 0 0 0 0.82752 1 4915 4915 2.5775 0 1 92309 47087 15119 29694 29708 54367 54367 0.03373792143531773 VETFNRPI 8 Unmodified _VETFNRPI_ 0 0 0 REV__HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|201|2|anti-sense REV__HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|201|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.2662658691406 2 488.266542 974.51853 -0.13378 -6.5318E-05 0.11786 5.7548E-05 -0.015913 -7.7698E-06 488.2664168971098 40.344 0.80441 43.715 43.414 44.219 3.3712 94 55 2 0 0 0 0.82752 1 7949 7949 4.756 0.42677 1 139420 + 47088 23878 29695 29709 54368 54368 0.030251872717599326 VETGSHYVA 9 Unmodified _VETGSHYVA_ 0 0 0 AluJr_dup23664|chr5:131289839-131290146:-|1.12053976019688|0.0030139817385593|8.54|151.0|17|1|anti-sense;AluJr4_dup9402|chr8:56004778-56005083:-|1.0478713933467327|0.0374950864201951|4.8|151.0|25|3|anti-sense;AluJr_dup1437|chr1:30754250-30754562:+|1.2681181388369025|0.0251996041011196|5.65|150.0|24|3|anti-sense;AluJr_dup80379|chr19:57794788-57795053:-|1.05418454633119|0.1899024498032911|2.47|151.0|21|3|anti-sense;AluJb_dup108043|chr17:44453542-44453832:-|1.108610623881304|0.0259044848214953|5.42|151.0|14|1|anti-sense;AluJb_dup105044|chr17:1388967-1389268:-|1.4261729883873215|0.0379501446807389|5.23|151.0|17|1|anti-sense;AluJb_dup105663|chr17:8955914-8956183:+|1.0850597085404423|0.0103208357272181|6.72|150.0|13|1|anti-sense;AluJo_dup47561|chr11:73385745-73386044:+|1.8536988505861105|0.1344046872940376|3.79|151.0|20|2|anti-sense;AluJo_dup30554|chr7:102557696-102557988:-|4.5096413909876665|0.2724117601077768|4.05|151.0|21|3|anti-sense;AluJo_dup30527|chr7:102351292-102351585:+|1.1791065155303655|0.2154304396430021|2.45|150.0|13|1|anti-sense;AluJb_dup119245|chr20:4007623-4007927:+|1.112108091038304|0.0081965775816425|7.08|151.0|12|1|anti-sense;AluJo_dup27212|chr7:6423012-6423265:+|2.2781093649374067|0.2791232590323559|3.03|151.0|12|1|anti-sense;AluJr_dup32668|chr7:75378143-75378439:-|1.646381531221259|0.1065688832460337|3.95|150.0|18|2|anti-sense;AluJr_dup928|chr1:21722273-21722558:+|1.1338404570705825|0.1335593614508681|3.09|151.0|15|1|anti-sense;AluJo_dup53237|chr13:21439218-21439548:+|1.1829023373723566|0.0084463714497768|7.13|150.0|21|3|anti-sense;ENSG00000177051.6,FBXO46,chr19,-,I1.1,45723497,45730848|27|5.44|1|intron AluJr_dup23664|chr5:131289839-131290146:-|1.12053976019688|0.0030139817385593|8.54|151.0|17|1|anti-sense AluJr_dup23664|chr5:131289839-131290146:-|1.12053976019688|0.0030139817385593|8.54|151.0|17|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 481.7325744628906 2 481.732532 961.45051 0.1988 9.5766E-05 0.019141 9.2207E-06 0.21794 0.00010499 481.7324548803119 53.631 1.3143 53.631 53.19 54.504 0 309 140 3 0 0 0 0.17468 2 11460 11460;11675 23.148 23.148 1 2286200 47089 9 29696 29710 54369;54370 54369 -0.031756823789010014 VETIFLFLC 9 Unmodified _VETIFLFLC_ 0 0 0 LTR67B_dup378|chr2:32332100-32332526:-|1.4974506363669895|0.0176733686627354|6.4|151.0|12|3|sense LTR67B_dup378|chr2:32332100-32332526:-|1.4974506363669895|0.0176733686627354|6.4|151.0|12|3|sense LTR67B_dup378|chr2:32332100-32332526:-|1.4974506363669895|0.0176733686627354|6.4|151.0|12|3|sense MSMS UPN47_class_I_Rep_1 2 542.7921752929688 2 542.791004 1083.56745 NaN NaN NaN NaN NaN NaN NaN 54.011 1 57.539 57.039 58.039 3.5278 0 0 0 0.39326 1 12149 12149 2.3027 0 1 47090 15694 29697 29711 54371 54371 0.02901339516506596 VETIFSKY 8 Unmodified _VETIFSKY_ 0 0 0 ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000125970|Q9UKM9-2|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MSMS UPN46_class_I_Rep_3 1 493.7635803222656 2 493.7633 985.512048 NaN NaN NaN NaN NaN NaN NaN 53.596 1 53.596 53.096 54.096 0 0 0 0 0.33283 1 11543 11543 26.268 5.8145 1 47091 2523 29698 29712 54372 54372 0.0187124932037932 VETLKDSEYE 10 Unmodified _VETLKDSEYE_ 0 0 0 REV__L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|44|2|sense REV__L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|44|2|sense MSMS UPN46_class_I_Rep_3 1 404.5889587402344 3 404.859198 1211.55576 NaN NaN NaN NaN NaN NaN NaN 43.793 1 43.793 43.293 44.293 0 0 0 0 0.53105 1 8772 8772 1.9064 0.71303 1 + 47092 30214 29699 29713 54373 54373 -0.041552307637857666 VETLKEYEN 9 Unmodified _VETLKEYEN_ 0 0 0 REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|149|3|sense REV__L1PA8_dup1355|chr3:66306487-66312958:-|1.4785836097240777|0.0454684283615755|5.02|151.0|149|3|sense MSMS UPN47_class_I_Rep_3 4 562.759765625 2 562.777136 1123.53972 NaN NaN NaN NaN NaN NaN NaN 30.53 1 33.842 33.342 34.342 3.3116 0 0 0 0.39428 1 5081 5081 2.0598 0 1 + 47093 30198 29700 29714 54374 54374 -0.017108922100533164 VETLLSVLL 9 Unmodified _VETLLSVLL_ 0 0 0 LTR41_dup460|chr6:89840387-89841001:-|1.1413704263503626|0.0341895822470499|5.06|151.0|28|2|anti-sense LTR41_dup460|chr6:89840387-89841001:-|1.1413704263503626|0.0341895822470499|5.06|151.0|28|2|anti-sense LTR41_dup460|chr6:89840387-89841001:-|1.1413704263503626|0.0341895822470499|5.06|151.0|28|2|anti-sense MSMS UPN46_class_I_Rep_3 1 493.8103942871094 2 493.810251 985.605948 NaN NaN NaN NaN NaN NaN NaN 53.683 1 53.683 53.183 54.183 0 0 0 0 0.36505 1 11569 11569 7.2892 0 1 47094 15639 29701 29715 54375 54375 0.11256968422662794 VETLPWELK 9 Unmodified _VETLPWELK_ 0 0 0 REV__ENSG00000167699|ENST00000301329|GLOD4 REV__ENSG00000167699|ENST00000301329|GLOD4 MSMS UPN48_class_I_Rep_1 5 557.810302734375 2 557.810782 1113.60701 NaN NaN NaN NaN NaN NaN NaN 44.939 1 48.452 47.952 48.952 3.5132 0 0 0 0.39518 1 8612 8612 1.8442 0.19162 1 + 47095 20231 29702 29716 54376 54376 0.05475182791565203 VETLPWELK 9 Unmodified _VETLPWELK_ 0 0 0 REV__ENSG00000167699|ENST00000301329|GLOD4 REV__ENSG00000167699|ENST00000301329|GLOD4 MSMS UPN48_class_I_Rep_2 6 557.8115234375 2 557.810782 1113.60701 NaN NaN NaN NaN NaN NaN NaN 44.422 1 48.184 47.684 48.684 3.7617 0 0 0 0.39518 1 8464 8464 1.8442 0.36234 1 + 47096 20231 29702 29716 54377 54377 0.05475182791565203 VETQFNQY 8 Unmodified _VETQFNQY_ 0 0 0 ENST00000468978.2_1_1:155159604-155160306:-|nuORF;nc|ENSG00000185499|P15941-13|MUC1;nc|ENSG00000185499|P15941-15|MUC1;nc|ENSG00000185499|P15941-6|MUC1;nc|ENSG00000185499|P15941-7|MUC1;nc|ENSG00000185499|P15941-17|MUC1;nc|ENSG00000185499|P15941-11|MUC1;nc|ENSG00000185499|P15941-8|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1 ENST00000468978.2_1_1:155159604-155160306:-|nuORF ENST00000468978.2_1_1:155159604-155160306:-|nuORF MSMS UPN47_class_I_Rep_1 2 514.7384643554688 2 514.737814 1027.46108 NaN NaN NaN NaN NaN NaN NaN 64.565 1 67.921 67.421 68.421 3.3557 0 0 0 0.39819 1 15346 15346 8.5933 0 1 47097 5105 29703 29717 54378 54378 -0.05155699724468832 VETQFNQY 8 Unmodified _VETQFNQY_ 0 0 0 ENST00000468978.2_1_1:155159604-155160306:-|nuORF;nc|ENSG00000185499|P15941-13|MUC1;nc|ENSG00000185499|P15941-15|MUC1;nc|ENSG00000185499|P15941-6|MUC1;nc|ENSG00000185499|P15941-7|MUC1;nc|ENSG00000185499|P15941-17|MUC1;nc|ENSG00000185499|P15941-11|MUC1;nc|ENSG00000185499|P15941-8|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1 ENST00000468978.2_1_1:155159604-155160306:-|nuORF ENST00000468978.2_1_1:155159604-155160306:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 514.7379760742188 2 514.737814 1027.46108 0.26753 0.00013771 -0.083161 -4.2806E-05 0.18437 9.4902E-05 514.7377510620313 64.806 0.45723 67.985 67.691 68.148 3.1795 56 36 2 0 0 0 0.82752 1 15550 15550 8.5933 0 1 76880 47098 5105 29703 29717 54379 54379 -0.05155699724468832 VETSFTLDY 9 Unmodified _VETSFTLDY_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS UPN47_class_I_Rep_3 4 537.753173828125 2 537.75313 1073.49171 0.43615 0.00023454 0.26681 0.00014348 0.70296 0.00037802 537.7531181721115 75.425 0.45412 78.671 78.393 78.847 3.2464 58 41 2 0 0 0 0.36392 1 18735 18735 10.074 3.3508 1 109550 + 47099 17971 29704 29718 54380 54380 -0.04209966130088105 VETSFTLDY 9 Unmodified _VETSFTLDY_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 537.75313 1073.49171 0.39267 0.00021116 0.17026 9.156E-05 0.56293 0.00030272 537.7530819192293 75.112 0.51433 78.506 78.296 78.81 3.3937 -0.082505 -5.6267E-05 NaN 10.074 64 45 2 NaN NaN NaN NaN 0 NaN NaN 0 96518 + 47100 17971 29704 29718 -0.04209966130088105 VEVEKFAF 8 Unmodified _VEVEKFAF_ 0 0 0 REV__ENSG00000108592|ENST00000427159|FTSJ3 REV__ENSG00000108592|ENST00000427159|FTSJ3 MSMS UPN46_class_I_Rep_3 1 484.75830078125 2 484.758018 967.501483 NaN NaN NaN NaN NaN NaN NaN 62.039 1 62.039 61.539 62.539 0 0 0 0 0.32114 1 13849 13849 29.082 5.061 1 + 47101 18388 29705 29719 54381 54381 0.016432666659511597 VEVFGKKP 8 Unmodified _VEVFGKKP_ 0 0 0 REV__ENSG00000116138|ENST00000375847|DNAJC16 REV__ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS UPN46_class_I_Rep_3 1 452.2689208984375 2 452.268553 902.522553 -0.098755 -4.4664E-05 0.95681 0.00043273 0.85805 0.00038807 452.2689216154714 28.756 0.25183 28.756 28.563 28.814 0 35 18 3 0 0 0 0.82752 1 4411 4411 0.69038 0 1 256380 + 47102 18598 29706 29720 54382 54382 0.06739276765483737 VEVFGKKP 8 Unmodified _VEVFGKKP_ 0 0 0 REV__ENSG00000116138|ENST00000375847|DNAJC16 REV__ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS UPN46_class_I_Rep_3 1 452.26885986328125 2 452.268553 902.522553 -0.071909 -3.2522E-05 1.0863 0.0004913 1.0144 0.00045877 452.2690193509187 29.947 0.18443 29.947 29.801 29.985 0 22 17 2 0 0 0 0.82752 1 4818 4818 2.3027 0 1 251550 + 47103 18598 29706 29720 54383 54383 0.06739276765483737 VEVFGKKP 8 Unmodified _VEVFGKKP_ 0 0 0 REV__ENSG00000116138|ENST00000375847|DNAJC16 REV__ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS UPN46_class_I_Rep_3 1 452.2695007324219 2 452.268553 902.522553 0.17002 7.6893E-05 2.192 0.00099135 2.362 0.0010682 452.2696265123759 43.463 0.072578 43.463 43.448 43.521 0 7 4 2 0 0 0 0.82752 1 8685 8685 2.3027 0 1 200320 + 47104 18598 29706 29720 54384 54384 0.06739276765483737 VEVGGFHH 8 Unmodified _VEVGGFHH_ 0 0 0 AluSx1_dup1517|chr1:22057721-22058028:-|1.3835011948509246|0.0199176963890295|6.12|151.0|16|2|anti-sense AluSx1_dup1517|chr1:22057721-22058028:-|1.3835011948509246|0.0199176963890295|6.12|151.0|16|2|anti-sense AluSx1_dup1517|chr1:22057721-22058028:-|1.3835011948509246|0.0199176963890295|6.12|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_1 5 440.79931640625 2 441.216852 880.419151 NaN NaN NaN NaN NaN NaN NaN 79.133 1 82.668 82.168 83.168 3.5352 0 0 0 0.40738 1 18881 18881 0.79363 0 1 47105 311 29707 29721 54385 54385 -0.025842106223308292 VEVHGLRKR 9 Unmodified _VEVHGLRKR_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MSMS UPN47_class_I_Rep_3 4 547.3330078125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 73.146 1 76.374 75.874 76.874 3.2271 0 0 0 0.39428 1 18046 18046 2.0598 0 1 47106 4325 29708 29722 54386 54386 0.10899051448268438 VEVIHDKK 8 Unmodified _VEVIHDKK_ 0 0 0 THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS;nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant THEMIS|p.E524Afs*13|1|0.56|ENSG00000172673|chr6:127813069-127813070|TT/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 484.2826232910156 2 484.282192 966.549831 -0.17567 -8.5072E-05 0.45141 0.00021861 0.27574 0.00013354 484.28224485549583 35.46 0.66858 38.872 38.711 39.38 3.4114 87 42 3 0 0 0 0.82752 1 6615 6615 0.79363 0 1 87975 47107 4586 29709 29723 54387 54387 0.06521760305861335 VEVKVKIPEEL 11 Unmodified _VEVKVKIPEEL_ 0 0 0 nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENSG00000185787|ENST00000426013|MORF4L1;ENST00000558893.5_1_15:79165359-79184661:+|nuORF nc|ENSG00000185787|Q9UBU8|MORF4L1 nc|ENSG00000185787|Q9UBU8|MORF4L1 MSMS UPN46_class_I_Rep_3 1 641.8829345703125 2 641.884478 1281.7544 NaN NaN NaN NaN NaN NaN NaN 93.828 1 93.828 93.328 94.328 0 0 0 0 0.38417 1 22750 22750 2.7352 0 1 47108 16778 29710 29724 54388 54388 0.12479654605704127 VEVLCQELTA 10 Unmodified _VEVLCQELTA_ 0 0 0 nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B nc|ENSG00000155324|Q96HH9-2|GRAMD2B nc|ENSG00000155324|Q96HH9-2|GRAMD2B MSMS UPN46_class_I_Rep_3 1 552.7843017578125 2 552.783907 1103.55326 NaN NaN NaN NaN NaN NaN NaN 87.068 1 87.068 86.568 87.568 0 0 0 0 0.53105 1 20843 20843 1.3295 0 1 47109 16716 29711 29725 54389 54389 0.005626422975637979 VEVLIPHKIQP 11 Unmodified _VEVLIPHKIQP_ 0 0 0 REV__ENST00000481369.1_1_X:53230656-53231176:-|nuORF REV__ENST00000481369.1_1_X:53230656-53231176:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 636.8872680664062 2 636.887355 1271.76016 0.43352 0.0002761 0.47412 0.00030196 0.90764 0.00057806 636.8874218164299 108.66 0.57419 112.29 112.17 112.75 3.6321 165 68 3 0 0 0 0.61292 1 26282 26282 4.897 0 1 16342000 + 47110 22466 29712 29726 54390 54390 0.1351479790803296 VEVLNFVK 8 Unmodified _VEVLNFVK_ 0 0 0 REV__L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|89|3|anti-sense REV__L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|89|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.0638427734375 2 474.28166 946.548768 -0.20884 -9.9047E-05 1.4532 0.00068922 1.2444 0.00059017 474.2821353377593 20.994 0.077953 20.994 20.947 21.025 0 16 8 3 0 0 0 0.72333 1 2273 2273 0.69038 0 1 166410 + 47111 25962 29713 29727 54391 54391 0.07335545936962262 VEVPDVEL 8 Unmodified _VEVPDVEL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS UPN48_class_I_Rep_1 5 450.2394104003906 2 450.239658 898.464763 NaN NaN NaN NaN NaN NaN NaN 66.568 1 70.019 69.519 70.519 3.4516 0 0 0 0.4044 1 15232 15232 4.756 0 1 47112 2492 29714 29728 54392 54392 0.01146970049387619 VEVPDVEL 8 Unmodified _VEVPDVEL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS UPN48_class_I_Rep_2 6 450.23968505859375 2 450.239658 898.464763 NaN NaN NaN NaN NaN NaN NaN 66.61 1 70.097 69.597 70.597 3.4866 0 0 0 0.3903 1 15231 15231 11.64 3.7301 1 47113 2492 29714 29728 54393 54393 0.01146970049387619 VEVPDVEL 8 Unmodified _VEVPDVEL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS UPN48_class_I_Rep_3 7 450.2391052246094 2 450.239658 898.464763 0.20926 9.4219E-05 -0.32725 -0.00014734 -0.11798 -5.3121E-05 450.2395096453654 66.357 0.35585 69.864 69.723 70.079 3.5077 37 29 2 0 0 0 0.82752 1 15067 15067 7.9102 2.6795 1 62043 47114 2492 29714 29728 54394 54394 0.01146970049387619 VEVQKQVL 8 Unmodified _VEVQKQVL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS UPN47_class_I_Rep_1 2 471.7956237792969 2 471.784567 941.554582 NaN NaN NaN NaN NaN NaN NaN 58.178 1 61.615 61.115 62.115 3.437 0 0 0 0.388 1 13414 13414 12.532 0 1 47115 3538 29715 29729 54395 54395 0.08146644448629559 VEVQKQVL 8 Unmodified _VEVQKQVL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS UPN47_class_I_Rep_3 4 471.7953796386719 2 471.784567 941.554582 NaN NaN NaN NaN NaN NaN NaN 58.412 1 61.578 61.078 62.078 3.1658 0 0 0 0.40501 1 13571 13571 3.9444 0 1 47116 3538 29715 29729 54396 54396 0.08146644448629559 VEVRGSIL 8 Unmodified _VEVRGSIL_ 0 0 0 REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|36|2|sense REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.7638244628906 2 436.763635 871.512717 -0.029543 -1.2903E-05 0.073642 3.2164E-05 0.044098 1.9261E-05 436.76355260436776 53.972 0.69799 57.5 57.188 57.886 3.5278 72 38 2 0 0 0 0.82752 1 12083 12083 26.884 0 1 193100 + 47117 32804 29716 29730 54397 54397 0.07182088760112038 VEVRQKIQ 8 Unmodified _VEVRQKIQ_ 0 0 0 L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|3|1|sense L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|3|1|sense L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 500.27203369140625 2 500.300916 998.587279 NaN NaN NaN NaN NaN NaN NaN 28.894 1 28.894 28.394 29.394 0 0 0 0 0.40643 1 4502 4502 2.0598 0 1 47118 12787 29717 29731 54398 54398 0.08792851571479332 VEWNGDGTGS 10 Unmodified _VEWNGDGTGS_ 0 0 0 nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 nc|ENSG00000126214|Q07866-5|KLC1 MSMS UPN46_class_I_Rep_3 1 511.2142028808594 2 511.214703 1020.41485 NaN NaN NaN NaN NaN NaN NaN 62.482 1 62.482 61.982 62.982 0 0 0 0 0.53105 1 13971 13971 1.4819 0.28856 1 47119 2528 29718 29732 54399 54399 -0.09453764626562133 VEWTLFVKR 9 Unmodified _VEWTLFVKR_ 0 0 0 REV__Charlie1a_dup584|chr2:31989259-31989657:+|1.2798615453536972|0.0045522263358015|8.14|151.0|21|2|anti-sense REV__Charlie1a_dup584|chr2:31989259-31989657:+|1.2798615453536972|0.0045522263358015|8.14|151.0|21|2|anti-sense MSMS UPN47_class_I_Rep_3 4 589.3424682617188 2 589.340041 1176.66553 NaN NaN NaN NaN NaN NaN NaN 82.467 1 85.804 85.304 86.304 3.337 0 0 0 0.4007 1 20667 20667 0.52476 0 1 + 47120 17349 29719 29733 54400 54400 0.08426284156712427 VEYNLQQHF 9 Unmodified _VEYNLQQHF_ 0 0 0 ENSG00000080839.12,RBL1,chr20,-,I16.1,37032877,37035241|30|5.59|2|intron;ENSG00000080839.12,RBL1,chr20,-,I16.1,37032877,37035241|30|5.59|8|intron;ENSG00000080839.12,RBL1,chr20,-,I16.1,37032877,37035241|30|5.59|6|intron;nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 ENSG00000080839.12,RBL1,chr20,-,I16.1,37032877,37035241|30|5.59|2|intron ENSG00000080839.12,RBL1,chr20,-,I16.1,37032877,37035241|30|5.59|2|intron MULTI-MSMS UPN47_class_I_Rep_1 2 589.2855224609375 2 589.285463 1176.55637 0.15408 9.0798E-05 0.27354 0.00016119 0.42762 0.00025199 589.2855363487613 46.982 0.23669 50.677 50.47 50.706 3.6951 14 12 2 0 0 0 0.48846 1 10006 10006 1.8442 0.36234 1 56781 47121 1208 29720 29734 54401 54401 -0.02484346533447024 VEYRRFFN 8 Unmodified _VEYRRFFN_ 0 0 0 ENST00000397863.5_1_18:74726690-74726957:-|nuORF ENST00000397863.5_1_18:74726690-74726957:-|nuORF ENST00000397863.5_1_18:74726690-74726957:-|nuORF MSMS UPN47_class_I_Rep_1 2 565.7908935546875 2 565.790715 1129.56688 NaN NaN NaN NaN NaN NaN NaN 29.503 1 33.26 32.76 33.76 3.7578 0 0 0 0.40604 1 4695 4695 2.5775 0 1 47122 6578 29721 29735 54402 54402 0.00727680911677453 VEYSQMYSY 9 Unmodified _VEYSQMYSY_ 0 0 0 nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP MULTI-MSMS UPN47_class_I_Rep_1 2 586.2510375976562 2 585.244615 1168.47468 0.34572 0.00020233 0.74591 0.00043654 1.0916 0.00063887 585.2425718452156 68.431 0.56938 71.796 71.546 72.116 3.3646 147 42 4 0 0 0 0.46434 1 16484 16484 4.3292 0 1 176230 47123 4880 29722 29736 54403 54403 -0.10282210007540016 VEYVFFWATF 10 Unmodified _VEYVFFWATF_ 0 0 0 REV__ENSG00000134825|ENST00000537328|TMEM258 REV__ENSG00000134825|ENST00000537328|TMEM258 MSMS UPN47_class_I_Rep_3 4 436.8786926269531 3 436.881497 1307.62266 NaN NaN NaN NaN NaN NaN NaN 25.994 1 29.342 28.842 29.842 3.3478 0 0 0 0.53105 1 3738 3738 0.77653 0.14971 1 + 47124 19114 29723 29737 54404 54404 -0.018845306914045068 VFAGAHAYTS 10 Unmodified _VFAGAHAYTS_ 0 0 0 REV__ENSG00000113504|ENST00000264930|SLC12A7 REV__ENSG00000113504|ENST00000264930|SLC12A7 MULTI-MSMS UPN48_class_I_Rep_1 5 512.2490234375 2 512.248349 1022.48214 0.25835 0.00013234 1.8335 0.00093921 2.0919 0.0010715 512.2493888743736 80.904 0.29763 84.467 84.378 84.676 3.5624 50 36 2 0 0 0 0.23621 1 19280 19280 39.957 7.1716 1 293410 + 47125 18509 29724 29738 54405 54405 -0.028196896249596648 VFAGAHAYTS 10 Unmodified _VFAGAHAYTS_ 0 0 0 REV__ENSG00000113504|ENST00000264930|SLC12A7 REV__ENSG00000113504|ENST00000264930|SLC12A7 MULTI-MATCH UPN48_class_I_Rep_3 7 2 512.248349 1022.48214 0.33911 0.00017371 1.5709 0.0008047 1.91 0.00097841 512.2494182679538 80.996 0.044189 84.659 84.634 84.678 3.6635 0.096112 -0.00020122 NaN 39.957 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 53108 + 47126 18509 29724 29738 -0.028196896249596648 VFAGPSQDSVD 11 Unmodified _VFAGPSQDSVD_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-SECPEP UPN47_class_I_Rep_2 3 561.259765625 2 561.259111 1120.50367 0.39354 0.00022088 0.35217 0.00019766 0.74572 0.00041854 561.2592229255464 68.61 0.54797 71.879 71.518 72.066 3.2696 83 48 2 0 0 0 22.551 1 16651 16651 3.5965 0.70727 1 123190 + 47127 19045 29725 29739 54406 54406 -0.051763493868975274 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MSMS UPN48_class_I_Rep_1 5 501.25872802734375 2 501.258185 1000.50182 NaN NaN NaN NaN NaN NaN NaN 80.543 1 84.091 83.591 84.591 3.5487 0 0 0 0.046744 1 19201 19201 37.974 5.6685 1 47128 2469 29726 29740 54407 54407 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MSMS UPN48_class_I_Rep_1 5 501.25836181640625 2 501.258185 1000.50182 NaN NaN NaN NaN NaN NaN NaN 80.666 1 84.229 83.729 84.729 3.5624 0 0 0 1.7906E-121 1 19225 19225 152.41 84.332 1 47129 2469 29726 29740 54408 54408 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN48_class_I_Rep_2 6 501.2585144042969 2 501.258185 1000.50182 0.28996 0.00014534 0.3865 0.00019374 0.67646 0.00033908 501.2584062882414 80.511 0.1471 84.155 84.045 84.192 3.6446 41 21 3 0 0 0 0.0092715 1 19090 19090 108 49.318 1 1678700 47130 2469 29726 29740 54409 54409 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN48_class_I_Rep_2 6 501.258544921875 2 501.258185 1000.50182 0.29009 0.00014541 0.27425 0.00013747 0.56434 0.00028288 501.2582253552862 80.627 0.14612 84.272 84.184 84.33 3.6446 66 20 4 0 0 0 0.0013614 1 19118 19118 152.41 74.263 1 2651200 47131 2469 29726 29740 54410 54410 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN48_class_I_Rep_2 6 501.2583923339844 2 501.258185 1000.50182 0.29005 0.00014539 0.23618 0.00011839 0.52623 0.00026378 501.2582218295997 80.772 0.18126 84.417 84.322 84.503 3.6446 72 24 4 0 0 0 0.0064161 2 19144 19144;19172 126.57 65.208 1 2332500 47132 2469 29726 29740 54411;54412 54411 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MSMS UPN48_class_I_Rep_2 6 501.25836181640625 2 501.258185 1000.50182 0.28997 0.00014535 0.16463 8.2524E-05 0.45461 0.00022787 501.2582388520795 80.951 0.40761 84.608 84.501 84.909 3.6567 105 52 3 0 0 0 0.0069867 2 19204 19204;19240 123.45 55.37 1 928460 47133 2469 29726 29740 54413;54414 54413 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MSMS UPN48_class_I_Rep_3 7 501.2586975097656 2 501.258185 1000.50182 NaN NaN NaN NaN NaN NaN NaN 80.435 1 84.099 83.599 84.599 3.6635 0 0 0 0.023553 1 19036 19036 52.268 19.963 1 47134 2469 29726 29740 54415 54415 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 501.258185 1000.50182 0.21765 0.0001091 0.32143 0.00016112 0.53908 0.00027022 501.25823586900907 81.252 0.15902 84.814 84.748 84.907 3.5624 0.11658 0.00012507 NaN 123.45 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 220810 47135 2469 29726 29740 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 501.258185 1000.50182 0.21855 0.00010955 0.33891 0.00016988 0.55745 0.00027943 501.2582685305682 80.794 0.69757 84.356 84.069 84.767 3.5624 0.10021 -5.8114E-06 NaN 108 236 93 4 NaN NaN NaN NaN 0 NaN NaN 0 2674300 47136 2469 29726 29740 0.0015868638580514016 VFAGVFNTF 9 Unmodified _VFAGVFNTF_ 0 0 0 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 ENSG00000124491|ENST00000264870|F13A1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 501.258185 1000.50182 0.29615 0.00014845 0.24307 0.00012184 0.53922 0.00027029 501.25823389455326 80.698 0.52681 84.361 84.101 84.628 3.6635 -0.027571 2.408E-06 NaN 126.57 229 69 4 NaN NaN NaN NaN 0 NaN NaN 0 3229300 47137 2469 29726 29740 0.0015868638580514016 VFAHILMRL 9 Unmodified _VFAHILMRL_ 0 0 0 L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|103|3|anti-sense L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|103|3|anti-sense L1PA16_dup4575|chr5:81540891-81542634:+|1.062902531717513|0.0868443949203465|3.61|151.0|103|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.3280029296875 2 550.325879 1098.63721 NaN NaN NaN NaN NaN NaN NaN 57.975 1 61.462 60.962 61.962 3.487 0 0 0 0.39518 1 12608 12608 1.8442 0 1 47138 14090 29727 29741 54416 54416 0.09183262975784601 VFALEELDL 9 Unmodified _VFALEELDL_ 0 0 0 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 MULTI-MSMS UPN48_class_I_Rep_1 5 524.7948608398438 2 524.78169 1047.54883 0.34194 0.00017944 0.11997 6.2959E-05 0.46191 0.0002424 524.7816660751286 68.577 0.507 72.029 71.746 72.253 3.4517 61 42 2 0 0 0 0.25207 1 15904 15904 16.942 4.4107 1 164120 47139 4178 29728 29742 54417 54417 0.026955011462860057 VFALEELDL 9 Unmodified _VFALEELDL_ 0 0 0 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 MULTI-MSMS UPN48_class_I_Rep_2 6 524.7950439453125 2 524.78169 1047.54883 0.39899 0.00020938 -0.08854 -4.6464E-05 0.31045 0.00016292 524.7815738043652 68.335 0.50792 71.844 71.634 72.142 3.5083 69 49 3 0 0 0 0.25207 1 15828 15828 16.942 0 1 130270 47140 4178 29728 29742 54418 54418 0.026955011462860057 VFALEELDL 9 Unmodified _VFALEELDL_ 0 0 0 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 MULTI-MSMS UPN48_class_I_Rep_3 7 524.7947998046875 2 524.78169 1047.54883 0.49726 0.00026095 0.9112 0.00047818 1.4085 0.00073913 524.7821745651487 68.546 0.083572 72.055 72.014 72.098 3.5093 7 4 2 0 0 0 0.25207 1 15722 15722 16.942 1.0951 1 48385 47141 4178 29728 29742 54419 54419 0.026955011462860057 VFANLFPVF 9 Unmodified _VFANLFPVF_ 0 0 0 Charlie7_dup2457|chr10:22623569-22624524:+|1.1297047495716537|0.0175604539039756|6.01|150.0|13|1|sense Charlie7_dup2457|chr10:22623569-22624524:+|1.1297047495716537|0.0175604539039756|6.01|150.0|13|1|sense Charlie7_dup2457|chr10:22623569-22624524:+|1.1297047495716537|0.0175604539039756|6.01|150.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 527.2896118164062 2 527.292028 1052.5695 NaN NaN NaN NaN NaN NaN NaN 63.94 1 67.415 66.915 67.915 3.4743 0 0 0 0.38478 1 14414 14414 4.3292 0 1 47142 535 29729 29743 54420 54420 0.045321363166067385 VFAPRLLLR 9 Unmodified _VFAPRLLLR_ 0 0 0 L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|393|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|393|3|anti-sense L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|393|3|anti-sense MSMS UPN48_class_I_Rep_2 6 543.30908203125 2 542.853119 1083.69168 NaN NaN NaN NaN NaN NaN NaN 20.129 1 23.779 23.279 24.279 3.6497 0 0 0 0.4007 1 1671 1671 0.52476 0 1 47143 10393 29730 29744 54421 54421 0.1531859811882441 VFARGQPG 8 Unmodified _VFARGQPG_ 0 0 0 REV__ENSG00000016490|ENST00000394711|CLCA1 REV__ENSG00000016490|ENST00000394711|CLCA1 MSMS UPN46_class_I_Rep_3 1 416.2278747558594 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 94.899 1 94.899 94.399 95.399 0 0 0 0 0.40738 1 23027 23027 0.79363 0 1 + 47144 17598 29731 29745 54422 54422 0.01788379757340408 VFARQGFKDTI 11 Unmodified _VFARQGFKDTI_ 0 0 0 REV__ENST00000414671.1_1_9:74825668-74829777:+|nuORF REV__ENST00000414671.1_1_9:74825668-74829777:+|nuORF MSMS UPN48_class_I_Rep_3 7 641.3510131835938 2 641.351137 1280.68772 NaN NaN NaN NaN NaN NaN NaN 74.604 1 78.155 77.655 78.655 3.5505 0 0 0 0.38417 1 17483 17483 2.7352 0 1 + 47145 18665 29732 29746 54423 54423 0.05860463834483198 VFCFSLEW 8 Unmodified _VFCFSLEW_ 0 0 0 REV__LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense REV__LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 515.73828125 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 29.516 1 32.839 32.339 33.339 3.3235 0 0 0 0.40604 1 4783 4783 2.5775 0 1 + 47146 30973 29733 29747 54424 54424 -0.050563622402250985 VFCGGFLHQYS 11 Unmodified _VFCGGFLHQYS_ 0 0 0 L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|177|2|anti-sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|177|2|anti-sense L1MA3_dup6465|chr11:73108871-73112664:-|21.150583366980403|0.1071510757737337|7.62|151.0|177|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 629.2918090820312 2 629.289691 1256.56483 0.49171 0.00030943 -0.57656 -0.00036282 -0.084853 -5.3397E-05 629.2891205171892 32.229 0.44968 35.756 35.441 35.89 3.5266 59 43 2 0 0 0 0.67113 1 4810 4810 1.3295 0.13619 1 113620 47147 9593 29734 29748 54425 54425 -0.05319115888437409 VFCLEVYFST 10 Unmodified _VFCLEVYFST_ 0 0 0 L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|90|1|anti-sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|90|1|anti-sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|90|1|anti-sense MSMS UPN47_class_I_Rep_1 2 604.2875366210938 2 604.288825 1206.5631 NaN NaN NaN NaN NaN NaN NaN 24.365 1 28.095 27.595 28.595 3.7298 0 0 0 0.53105 1 3171 3171 1.6526 0 1 47148 9268 29735 29749 54426 54426 -0.03192169697103964 VFCRMLGY 8 Unmodified _VFCRMLGY_ 0 0 0 ENST00000494979.1_1_2:119750668-119752093:+|nuORF;nc|ENSG00000019169|Q9UEW3-2|MARCO;ENSG00000019169|ENST00000327097|MARCO ENST00000494979.1_1_2:119750668-119752093:+|nuORF ENST00000494979.1_1_2:119750668-119752093:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 494.74053955078125 2 494.740791 987.467029 -0.10165 -5.0292E-05 -0.56693 -0.00028048 -0.66858 -0.00033077 494.74041536107325 45.998 0.74052 49.698 49.258 49.999 3.6999 80 42 2 0 0 0 0.82752 5 9603 9603;9631;9680;9730;9771 19.439 2.4967 1 122940 47149 804 29736 29750 54427;54428;54429;54430;54431 54427 -0.027205960181390765 VFCRMLGY 8 Unmodified _VFCRMLGY_ 0 0 0 ENST00000494979.1_1_2:119750668-119752093:+|nuORF;nc|ENSG00000019169|Q9UEW3-2|MARCO;ENSG00000019169|ENST00000327097|MARCO ENST00000494979.1_1_2:119750668-119752093:+|nuORF ENST00000494979.1_1_2:119750668-119752093:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.74041748046875 2 494.740791 987.467029 0.067111 3.3203E-05 -0.69309 -0.0003429 -0.62598 -0.0003097 494.7403129136794 46.411 0.80094 49.655 49.279 50.08 3.2439 88 50 2 0 0 0 0.82752 5 9837 9837;9892;9934;9974;10030 19.439 2.4967 1 150330 47150 804 29736 29750 54432;54433;54434;54435;54436 54432 -0.027205960181390765 VFCSIILN 8 Unmodified _VFCSIILN_ 0 0 0 L1MC4a_dup6403|chr10:74993262-74994500:-|2.536622892478328|0.0463746061095414|5.77|151.0|43|1|anti-sense L1MC4a_dup6403|chr10:74993262-74994500:-|2.536622892478328|0.0463746061095414|5.77|151.0|43|1|anti-sense L1MC4a_dup6403|chr10:74993262-74994500:-|2.536622892478328|0.0463746061095414|5.77|151.0|43|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.7508239746094 2 454.749139 907.483725 -0.19725 -8.97E-05 0.46312 0.0002106 0.26587 0.0001209 454.7509641143321 45.628 0.62281 49.328 48.997 49.62 3.6999 54 33 2 0 0 0 0.82752 1 9667 9667 2.5775 0 1 96512 47151 11597 29737 29751 54437 54437 0.026282281394628626 VFCVDDCCCGV 11 Unmodified _VFCVDDCCCGV_ 0 0 0 MER21A_dup836|chr6:166986045-166986571:-|1.5505769220672694|0.24465383591558|2.66|151.0|12|2|sense MER21A_dup836|chr6:166986045-166986571:-|1.5505769220672694|0.24465383591558|2.66|151.0|12|2|sense MER21A_dup836|chr6:166986045-166986571:-|1.5505769220672694|0.24465383591558|2.66|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 581.7028198242188 2 581.70543 1161.39631 NaN NaN NaN NaN NaN NaN NaN 107.34 1 110.97 110.47 111.47 3.6299 0 0 0 0.38417 1 25874 25874 0.30703 0 1 47152 15858 29738 29752 54438 54438 -0.1779342518032081 VFCVDFCPFF 10 Unmodified _VFCVDFCPFF_ 0 0 0 REV__MER51A_dup541|chrX:123989984-123990516:-|1.1236514453960715|0.0078224266446124|7.17|151.0|12|2|sense REV__MER51A_dup541|chrX:123989984-123990516:-|1.1236514453960715|0.0078224266446124|7.17|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 612.2646484375 2 612.266838 1222.51912 NaN NaN NaN NaN NaN NaN NaN 52.088 1 55.686 55.186 56.186 3.5979 0 0 0 0.53105 1 10732 10732 19.257 1.1106 1 + 47153 31394 29739 29753 54439 54439 -0.08323477395060763 VFCVKFWCLYF 11 Unmodified _VFCVKFWCLYF_ 0 0 0 REV__L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|261|2|anti-sense REV__L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|261|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.5707702636719 3 485.5715 1453.69267 NaN NaN NaN NaN NaN NaN NaN 34.854 1 38.279 37.779 38.779 3.4253 0 0 0 0.38417 1 6354 6354 1.4551 0 1 + 47154 29045 29740 29754 54440 54440 -0.016026916187684037 VFCVLIEPVC 10 Unmodified _VFCVLIEPVC_ 0 0 0 REV__L1PA5_dup9555|chr14:35174752-35180242:-|1.4998598223116069|0.038660395909299|5.28|151.0|197|1|anti-sense REV__L1PA5_dup9555|chr14:35174752-35180242:-|1.4998598223116069|0.038660395909299|5.28|151.0|197|1|anti-sense MSMS UPN48_class_I_Rep_1 5 561.3031616210938 2 561.290314 1120.56607 NaN NaN NaN NaN NaN NaN NaN 66.309 1 69.761 69.261 70.261 3.4516 0 0 0 0.53105 1 15154 15154 20.454 1.1966 1 + 47155 28847 29741 29755 54441 54441 0.010613821561037184 VFDAIAFGIF 10 Unmodified _VFDAIAFGIF_ 0 0 0 L1PA15_dup143|chr1:85852962-85854705:-|1.2935472399549086|0.0073897434091377|7.45|149.0|73|1|anti-sense L1PA15_dup143|chr1:85852962-85854705:-|1.2935472399549086|0.0073897434091377|7.45|149.0|73|1|anti-sense L1PA15_dup143|chr1:85852962-85854705:-|1.2935472399549086|0.0073897434091377|7.45|149.0|73|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.295166015625 2 550.294768 1098.57498 0.52068 0.00028653 0.065548 3.607E-05 0.58623 0.0003226 550.2947357546394 71.867 0.87184 75.333 75.044 75.916 3.466 207 81 3 0 0 0 0.46161 1 16973 16973 14.838 1.7958 1 710340 47156 13873 29742 29756 54442 54442 0.029638151084100173 VFDEPFIP 8 Unmodified _VFDEPFIP_ 0 0 0 REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense REV__L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense MSMS UPN47_class_I_Rep_1 2 482.2442321777344 2 482.244744 962.474934 NaN NaN NaN NaN NaN NaN NaN 119.6 1 123.21 122.71 123.71 3.6036 0 0 0 0.40738 1 29726 29726 0.79363 0 1 + 47157 29432 29743 29757 54443 54443 -0.00780422225386701 VFDHQRVL 8 Unmodified _VFDHQRVL_ 0 0 0 L1MB2_dup8437|chr20:25027173-25028679:+|1.4382551531022612|0.2631436716067632|2.45|150.0|80|2|anti-sense L1MB2_dup8437|chr20:25027173-25028679:+|1.4382551531022612|0.2631436716067632|2.45|150.0|80|2|anti-sense L1MB2_dup8437|chr20:25027173-25028679:+|1.4382551531022612|0.2631436716067632|2.45|150.0|80|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 506.77850341796875 2 507.279983 1012.54541 0.21527 0.0001092 0.41942 0.00021277 0.63469 0.00032197 507.2801230618453 92.757 0.32165 96.381 96.296 96.618 3.624 61 43 2 0 0 0 0.72333 1 22295 22295 2.8892 2.8892 1 168980 47158 10308 29744 29758 54444 54444 0.03964295882940405 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_2 3 475.2593994140625 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 34.736 1 38.161 37.661 38.661 3.4253 0 0 0 0.39819 1 6321 6321 8.5933 0 1 47159 3129 29745 29759 54445 54445 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_2 3 475.26031494140625 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 40.364 1 43.735 43.235 44.235 3.3712 0 0 0 0.36705 1 8029 8029 18.135 4.6271 1 47160 3129 29745 29759 54446 54446 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_2 3 475.2601013183594 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 40.5 1 43.871 43.371 44.371 3.3712 0 0 0 0.39819 1 8071 8071 8.5933 0 1 47161 3129 29745 29759 54447 54447 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_2 3 475.2602233886719 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 40.892 1 44.257 43.757 44.757 3.3655 0 0 0 0.39819 1 8189 8189 8.5933 0 1 47162 3129 29745 29759 54448 54448 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_2 3 475.2602233886719 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 41.376 1 44.741 44.241 45.241 3.3655 0 0 0 0.39996 1 8333 8333 7.9102 1.5561 1 47163 3129 29745 29759 54449 54449 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_3 4 475.25958251953125 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 34.887 1 38.151 37.651 38.651 3.2639 0 0 0 0.38547 1 6395 6395 13.508 0 1 47164 3129 29745 29759 54450 54450 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_3 4 475.2602844238281 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 40.023 1 43.26 42.76 43.76 3.2372 0 0 0 0.39819 1 7973 7973 8.5933 0 1 47165 3129 29745 29759 54451 54451 0.05909971833352756 VFDLLIVM 8 Unmodified _VFDLLIVM_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS UPN47_class_I_Rep_3 4 475.26025390625 2 475.274989 948.535426 NaN NaN NaN NaN NaN NaN NaN 40.607 1 43.844 43.344 44.344 3.2372 0 0 0 0.38547 1 8151 8151 13.508 0 1 47166 3129 29745 29759 54452 54452 0.05909971833352756 VFDPKVFTF 9 Unmodified _VFDPKVFTF_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS UPN48_class_I_Rep_1 5 550.2950439453125 2 550.294768 1098.57498 0.52068 0.00028653 0.065548 3.607E-05 0.58623 0.0003226 550.2947357546394 71.867 0.87184 75.333 75.044 75.916 3.466 207 81 3 0 0 0 0.022868 4 16881 16810;16847;16881;16919 61.602 29.296 1 710340 47167 2007 29746 29760 54453;54454;54455;54456 54455 0.029638151084100173 VFDPKVFTF 9 Unmodified _VFDPKVFTF_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS UPN48_class_I_Rep_2 6 550.2947998046875 2 550.294768 1098.57498 0.48259 0.00026556 0.15135 8.3287E-05 0.63394 0.00034885 550.294765123295 71.66 0.79044 75.211 74.937 75.727 3.5505 188 83 3 0 0 0 0.0073203 4 16802 16729;16767;16802;16834 71.708 27.881 1 586560 47168 2007 29746 29760 54457;54458;54459;54460 54459 0.029638151084100173 VFDPKVFTF 9 Unmodified _VFDPKVFTF_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS UPN48_class_I_Rep_3 7 550.2950439453125 2 550.294768 1098.57498 0.46863 0.00025788 0.17424 9.5883E-05 0.64287 0.00035377 550.2947719136546 71.7 0.8914 75.227 74.901 75.793 3.5266 211 86 4 0 0 0 0.016816 3 16654 16654;16692;16730 65.474 25.516 1 631880 47169 2007 29746 29760 54461;54462;54463 54461 0.029638151084100173 VFDWGPELP 9 Unmodified _VFDWGPELP_ 0 0 0 REV__MLT1G3_dup1573|chr9:131207196-131207728:-|1.23444600338802|0.463784159888737|1.41|151.0|1|1|sense REV__MLT1G3_dup1573|chr9:131207196-131207728:-|1.23444600338802|0.463784159888737|1.41|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 530.2611694335938 2 530.260925 1058.5073 0.41275 0.00021887 0.041575 2.2046E-05 0.45433 0.00024091 530.2608778951931 50.932 1.4725 54.6 53.997 55.469 3.6679 315 108 4 0 0 0 0.40174 1 10312 10312 7.9102 0 1 3029500 + 47170 31733 29747 29761 54464 54464 -0.019616348223962632 VFEFLNALF 9 Unmodified _VFEFLNALF_ 0 0 0 REV__L1PB1_dup6802|chr8:123364375-123366893:+|1.5743311847544368|0.0577137609061898|4.77|151.0|162|3|anti-sense REV__L1PB1_dup6802|chr8:123364375-123366893:+|1.5743311847544368|0.0577137609061898|4.77|151.0|162|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.2950439453125 2 550.294768 1098.57498 0.48259 0.00026556 0.15135 8.3287E-05 0.63394 0.00034885 550.294765123295 71.66 0.79044 75.211 74.937 75.727 3.5505 188 83 3 0 0 0 0.074367 1 16692 16692 39.957 5.8549 1 586560 + 47171 30295 29748 29762 54465 54465 0.029638151084100173 VFELEHVCR 9 Unmodified _VFELEHVCR_ 0 0 0 REV__ENST00000545893.5_1_17:38345052-38350037:+|nuORF REV__ENST00000545893.5_1_17:38345052-38350037:+|nuORF MSMS UPN48_class_I_Rep_3 7 566.2837524414062 2 566.284408 1130.55426 NaN NaN NaN NaN NaN NaN NaN 29.721 1 33.449 32.949 33.949 3.7286 0 0 0 0.39518 1 4202 4202 1.8442 0.19162 1 + 47172 18377 29749 29763 54466 54466 -0.0057909854290301155 VFEQKKPL 8 Unmodified _VFEQKKPL_ 0 0 0 ENSG00000223601|ENST00000422359|EBLN1 ENSG00000223601|ENST00000422359|EBLN1 ENSG00000223601|ENST00000422359|EBLN1 MULTI-MSMS UPN47_class_I_Rep_2 3 494.7940979003906 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 1 7092 7092 6.2058 2.2614 1 349140 47173 5655 29750 29764 54467 54467 0.08103234828286077 VFEQWTTRF 9 Unmodified _VFEQWTTRF_ 0 0 0 REV__ENSG00000186106|ENST00000335659|ANKRD46 REV__ENSG00000186106|ENST00000335659|ANKRD46 MULTI-MSMS UPN48_class_I_Rep_1 5 607.3037109375 2 607.303655 1212.59276 0.51828 0.00031475 -0.1628 -9.8868E-05 0.35548 0.00021588 607.3033311840616 57.161 0.75541 60.655 60.374 61.129 3.4942 106 65 2 0 0 0 0.30034 2 12387 12387;12472 13.906 0 1 247020 + 47174 20876 29751 29765 54468;54469 54468 -0.0050346963676020096 VFEQWTTRF 9 Unmodified _VFEQWTTRF_ 0 0 0 REV__ENSG00000186106|ENST00000335659|ANKRD46 REV__ENSG00000186106|ENST00000335659|ANKRD46 MULTI-MSMS UPN48_class_I_Rep_3 7 607.3037109375 2 607.303655 1212.59276 0.47062 0.00028581 -0.11286 -6.8538E-05 0.35777 0.00021727 607.3034542292914 57.061 0.69264 60.604 60.345 61.037 3.5427 138 69 3 0 0 0 0.28552 2 12193 12193;12230 14.838 0 1 235470 + 47175 20876 29751 29765 54470;54471 54470 -0.0050346963676020096 VFERFVGF 8 Unmodified _VFERFVGF_ 0 0 0 REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|182|3|anti-sense REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|182|3|anti-sense MSMS UPN47_class_I_Rep_3 4 500.77880859375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 68.555 1 71.753 71.253 72.253 3.1977 0 0 0 0.40738 1 16666 16666 0.79363 0 1 + 47176 30436 29752 29766 54472 54472 0.01802392622721527 VFERFVGF 8 Unmodified _VFERFVGF_ 0 0 0 REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|182|3|anti-sense REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|182|3|anti-sense MSMS UPN48_class_I_Rep_3 7 500.7662658691406 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 68.706 1 72.215 71.715 72.715 3.5094 0 0 0 0.40738 1 15773 15773 0.79363 0 1 + 47177 30436 29752 29766 54473 54473 0.01802392622721527 VFEYFFDIPFY 11 Unmodified _VFEYFFDIPFY_ 0 0 0 L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|147|2|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|147|2|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|147|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 496.6740417480469 3 496.235828 1485.68566 0.27029 0.00013413 -0.030085 -1.4929E-05 0.2402 0.0001192 496.2357638623521 46.557 0.45987 46.557 46.404 46.864 0 71 45 3 0 0 0 22.551 1 9523 9523 0.50596 0 1 193000 47178 12207 29753 29767 54474 54474 -0.03776009694001914 VFFEVSPVSF 10 Unmodified _VFFEVSPVSF_ 0 0 0 nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS UPN48_class_I_Rep_2 6 579.2966918945312 2 579.297507 1156.58046 0.47907 0.00027753 -1.2313 -0.00071331 -0.75227 -0.00043579 579.296478996255 89.197 0.55392 92.934 92.689 93.243 3.7379 137 61 3 0 0 0 0.30625 6 21252 21203;21209;21217;21252;21314;21320 31.268 21.194 1 193160 47179 1296 29754 29768 54475;54476;54477;54478;54479;54480 54478 0.0084349390024272 VFFEVSPVSF 10 Unmodified _VFFEVSPVSF_ 0 0 0 nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS UPN48_class_I_Rep_3 7 579.2977905273438 2 579.297507 1156.58046 0.49996 0.00028963 -2.404 -0.0013926 -1.904 -0.001103 579.2953559034305 89.28 0.47366 93.109 92.803 93.276 3.8293 97 59 2 0 0 0 0.32646 5 21182 21136;21144;21155;21176;21182 26.268 18.268 1 238800 47180 1296 29754 29768 54481;54482;54483;54484;54485 54485 0.0084349390024272 VFFEVSPVSF 10 Unmodified _VFFEVSPVSF_ 0 0 0 nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 579.297507 1156.58046 0.41088 0.00023802 -4.0255 -0.002332 -3.6147 -0.002094 579.2937784718523 89.333 0.18997 92.959 92.833 93.023 3.6255 -0.041936 -0.0027453 NaN 31.268 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 137690 47181 1296 29754 29768 0.0084349390024272 VFFFCFVL 8 Unmodified _VFFFCFVL_ 0 0 0 L1MA7_dup3598|chr7:92880257-92882976:+|6.278108901310202|0.0031537569337759|10.96|149.0|138|3|anti-sense;L1PB1_dup10547|chr13:49046857-49049707:-|1.817580182799432|0.0332272061982531|5.77|151.0|158|2|anti-sense;ENSG00000067560.13,RHOA,chr3,-,I6.1,49373343,49375429|76|25.51|1|intron L1MA7_dup3598|chr7:92880257-92882976:+|6.278108901310202|0.0031537569337759|10.96|149.0|138|3|anti-sense L1MA7_dup3598|chr7:92880257-92882976:+|6.278108901310202|0.0031537569337759|10.96|149.0|138|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 510.8440856933594 2 511.264425 1020.5143 0.113 5.7773E-05 -1.5218 -0.00077806 -1.4088 -0.00072028 511.26354917587855 72.392 0.45884 75.689 75.469 75.928 3.2971 53 39 2 0 0 0 0.72333 1 17757 17757 17.087 0 1 74769 47182 1035 29755 29769 54486 54486 0.004860065244997713 VFFFCLYL 8 Unmodified _VFFFCLYL_ 0 0 0 L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|122|2|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|122|2|anti-sense L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|122|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 526.3146362304688 2 526.269707 1050.52486 0.093663 4.9292E-05 0.0012252 6.4479E-07 0.094888 4.9937E-05 526.7716160987428 70.985 0.21655 74.268 74.128 74.344 3.2828 24 19 2 0 0 0 0.72333 1 17308 17308 11.114 0 1 82679 47183 14922 29756 29770 54487 54487 0.001619891789232497 VFFFFKKR 8 Unmodified _VFFFFKKR_ 0 0 0 L1MEd_dup18158|chr15:34266846-34267416:-|1.089544167204999|0.021627811949537|5.65|151.0|18|3|sense L1MEd_dup18158|chr15:34266846-34267416:-|1.089544167204999|0.021627811949537|5.65|151.0|18|3|sense L1MEd_dup18158|chr15:34266846-34267416:-|1.089544167204999|0.021627811949537|5.65|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 559.8306884765625 2 559.829112 1117.64367 NaN NaN NaN NaN NaN NaN NaN 98.589 1 98.589 98.089 99.089 0 0 0 0 0.40738 1 24007 24007 0.79363 0.10326 1 47184 13186 29757 29771 54488 54488 0.08955524198790954 VFFFILKKK 9 Unmodified _VFFFILKKK_ 0 0 0 REV__ENST00000273038.7_1_3:11597946-11598108:-|nuORF REV__ENST00000273038.7_1_3:11597946-11598108:-|nuORF MSMS UPN47_class_I_Rep_3 4 585.375 2 585.375895 1168.73724 NaN NaN NaN NaN NaN NaN NaN 47.031 1 50.275 49.775 50.775 3.2439 0 0 0 0.40038 1 10115 10115 0.6015 0.076735 1 + 47185 21611 29758 29772 54489 54489 0.1596182358121041 VFFFLANL 8 Unmodified _VFFFLANL_ 0 0 0 L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|203|2|anti-sense L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|203|2|anti-sense L1PB1_dup1655|chr2:190492655-190497062:+|4.306343559577538|0.3005472747661507|3.84|151.0|203|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.7875671386719 2 485.773471 969.53239 NaN NaN NaN NaN NaN NaN NaN 46.157 1 49.511 49.011 50.011 3.3534 0 0 0 0.38547 1 9794 9794 13.508 0 1 47186 15059 29759 29773 54490 54490 0.04640464770852759 VFFFVVVSLTS 11 Unmodified _VFFFVVVSLTS_ 0 0 0 L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|112|1|anti-sense L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|112|1|anti-sense L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|112|1|anti-sense MSMS UPN48_class_I_Rep_1 5 622.849609375 2 622.849907 1243.68526 NaN NaN NaN NaN NaN NaN NaN 106.77 1 110.4 109.9 110.9 3.6299 0 0 0 0.38417 1 25721 25721 1.1933 0 1 47187 9855 29760 29774 54491 54491 0.07316615376817026 VFFILGGLL 9 Unmodified _VFFILGGLL_ 0 0 0 ENSG00000165376|ENST00000336803|CLDN2 ENSG00000165376|ENST00000336803|CLDN2 ENSG00000165376|ENST00000336803|CLDN2 MSMS UPN47_class_I_Rep_2 3 489.80572509765625 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 94.979 1 98.454 97.954 98.954 3.4744 0 0 0 0.4029 1 23392 23392 0 0 1 47188 4177 29761 29775 54492 54492 0.10529610839068937 VFFILRTH 8 Unmodified _VFFILRTH_ 0 0 0 REV__AluJo_dup1804|chr1:35827788-35828044:-|1.3348464510809412|0.0785045021780359|4.09|151.0|11|1|anti-sense REV__AluJo_dup1804|chr1:35827788-35828044:-|1.3348464510809412|0.0785045021780359|4.09|151.0|11|1|anti-sense MSMS UPN47_class_I_Rep_2 3 516.8050537109375 2 516.803094 1031.59164 NaN NaN NaN NaN NaN NaN NaN 82.554 1 85.953 85.453 86.453 3.3984 0 0 0 0.40738 1 20577 20577 0.79363 0 1 + 47189 16986 29762 29776 54493 54493 0.0771036078506313 VFFLGPGIAE 10 Unmodified _VFFLGPGIAE_ 0 0 0 REV__L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|111|1|anti-sense REV__L1M2_dup7320|chr13:49147578-49150106:-|3.405413906389506|0.2170349698416915|3.97|151.0|111|1|anti-sense MSMS UPN47_class_I_Rep_1 2 525.3010864257812 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 58.201 1 61.638 61.138 62.138 3.437 0 0 0 0.53105 1 13421 13421 3.9444 0 1 + 47190 24229 29763 29777 54494 54494 0.03699528591391754 VFFLLLVQ 8 Unmodified _VFFLLLVQ_ 0 0 0 L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|337|3|anti-sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|337|3|anti-sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|337|3|anti-sense MSMS UPN47_class_I_Rep_1 2 489.8053894042969 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 77.596 1 81.025 80.525 81.525 3.4289 0 0 0 0.40746 1 19260 19260 0.69038 0 1 47191 15130 29764 29778 54495 54495 0.10529610839057568 VFFLLLVQ 8 Unmodified _VFFLLLVQ_ 0 0 0 L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|337|3|anti-sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|337|3|anti-sense L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|337|3|anti-sense MSMS UPN47_class_I_Rep_3 4 489.80596923828125 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 116.53 1 119.99 119.49 120.49 3.462 0 0 0 0.40738 1 28679 28679 0.79363 0 1 47192 15130 29764 29778 54496 54496 0.10529610839057568 VFFLLRWL 8 Unmodified _VFFLLRWL_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense;HERV17-int_dup555|chr9:35641385-35642827:-|1.0766333988326726|0.2284568824338885|2.24|151.0|75|3|anti-sense;HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|303|3|anti-sense;HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|55|1|anti-sense;HERV17-int_dup42|chr1:119168935-119171363:-|2.19770789531794|0.1687833323327496|3.7|151.0|137|3|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3324584960938 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 75.289 1 75.289 74.789 75.789 0 0 0 0 0.40738 1 17497 17497 0.79363 0 1 47193 8015 29765 29779 54497 54497 0.10580408341570546 VFFLLRWL 8 Unmodified _VFFLLRWL_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense;HERV17-int_dup555|chr9:35641385-35642827:-|1.0766333988326726|0.2284568824338885|2.24|151.0|75|3|anti-sense;HERV17-int_dup844|chr17:55012203-55017995:-|1.273224775040178|0.0678262409923266|4.23|151.0|303|3|anti-sense;HERV17-int_dup761|chr13:36956763-36958343:+|1.815619784903524|0.4246976571518588|2.1|150.0|55|1|anti-sense;HERV17-int_dup42|chr1:119168935-119171363:-|2.19770789531794|0.1687833323327496|3.7|151.0|137|3|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|317|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.33251953125 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 75.433 1 75.433 74.933 75.933 0 0 0 0 0.40738 1 17538 17538 0.79363 0 1 47194 8015 29765 29779 54498 54498 0.10580408341570546 VFFNIFQQY 9 Unmodified _VFFNIFQQY_ 0 0 0 L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|140|3|anti-sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|140|3|anti-sense L1M3_dup3384|chr9:95861563-95863798:-|1.431343858105521|0.1338366891780719|3.42|151.0|140|3|anti-sense MSMS UPN48_class_I_Rep_3 7 603.30224609375 2 603.303124 1204.5917 NaN NaN NaN NaN NaN NaN NaN 31.829 1 35.53 35.03 36.03 3.7015 0 0 0 0.39518 1 4761 4761 1.8442 0 1 47195 8763 29766 29780 54499 54499 -0.0024168400561848102 VFFPHRTL 8 Unmodified _VFFPHRTL_ 0 0 0 MER103C_dup110|chr1:35815389-35815615:+|1.1969365714203484|0.0274389486636879|5.45|151.0|16|2|anti-sense MER103C_dup110|chr1:35815389-35815615:+|1.1969365714203484|0.0274389486636879|5.45|151.0|16|2|anti-sense MER103C_dup110|chr1:35815389-35815615:+|1.1969365714203484|0.0274389486636879|5.45|151.0|16|2|anti-sense MSMS UPN46_class_I_Rep_3 1 508.7882080078125 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 86.957 1 86.957 86.457 87.457 0 0 0 0 0.40738 1 20812 20812 0.79363 0 1 47196 15762 29767 29781 54500 54500 0.05317787750959724 VFFQPKLIE 9 Unmodified _VFFQPKLIE_ 0 0 0 REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3 REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3 MULTI-SECPEP UPN47_class_I_Rep_2 3 561.2596435546875 2 560.823692 1119.63283 0.39162 0.00021963 -3.1985 -0.0017938 -2.8068 -0.0015741 560.8212624473279 68.322 0.044128 71.591 71.557 71.601 3.2696 4 2 2 0 0 0 0.12281 1 16523 16523 4.3292 0.73274 1 18422 + 47197 32048 29768 29782 54501 54501 0.07780077033862653 VFFSAWNRL 9 Unmodified _VFFSAWNRL_ 0 0 0 REV__nc|ENSG00000182366|P0C7U9|FAM87A REV__nc|ENSG00000182366|P0C7U9|FAM87A MULTI-SECPEP UPN48_class_I_Rep_2 6 569.8038330078125 2 570.303458 1138.59236 0.43706 0.00024926 3.3095 0.0018874 3.7466 0.0021367 570.3056416703696 39.521 0.034927 43.251 43.225 43.26 3.7297 5 3 2 0 0 0 0.12477 1 7017 7017 1.6526 0.17072 1 37777 + 47198 32078 29769 29783 54502 54502 0.028611554340841394 VFFTVQKLF 9 Unmodified _VFFTVQKLF_ 0 0 0 L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|157|1|anti-sense L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|157|1|anti-sense L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|157|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 564.3245849609375 2 564.826235 1127.63792 0.49033 0.00027695 -0.21662 -0.00012235 0.2737 0.0001546 564.8259231330973 97.38 0.051575 101.16 101.12 101.17 3.779 9 6 2 0 0 0 0.12477 1 23136 23136 1.6526 0 1 71968 47199 9462 29770 29784 54503 54503 0.0792038089646212 VFFVAIRWV 9 Unmodified _VFFVAIRWV_ 0 0 0 L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|46|2|anti-sense L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|46|2|anti-sense L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_2 6 568.7243041992188 2 568.834394 1135.65424 NaN NaN NaN NaN NaN NaN NaN 114.72 1 118.38 117.88 118.88 3.6616 0 0 0 0.40038 1 27434 27434 0.6015 0 1 47200 10832 29771 29785 54504 54504 0.09183506853241852 VFFVNSLWKGY 11 Unmodified _VFFVNSLWKGY_ 0 0 0 nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1 nc|ENSG00000183117|Q96PZ7-2|CSMD1 nc|ENSG00000183117|Q96PZ7-2|CSMD1 MSMS UPN47_class_I_Rep_2 3 453.7845458984375 3 453.908046 1358.70231 NaN NaN NaN NaN NaN NaN NaN 48.508 1 51.854 51.354 52.354 3.3465 0 0 0 0.38417 1 10494 10494 0.50596 0 1 47201 4984 29772 29786 54505 54505 0.037305359826177664 VFFVPRRA 8 Unmodified _VFFVPRRA_ 0 0 0 L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|93|1|anti-sense L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|93|1|anti-sense L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|93|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29534912109375 2 496.295436 990.57632 -0.062428 -3.0982E-05 0.17232 8.5521E-05 0.10989 5.4538E-05 496.29539678134296 25.126 0.16896 25.126 25.004 25.173 0 29 15 3 0 0 0 0.82752 1 3397 3397 2.5775 1.7838 1 216010 47202 14153 29773 29787 54506 54506 0.08065493987851369 VFFVSKIVN 9 Unmodified _VFFVSKIVN_ 0 0 0 REV__L1M4_dup4208|chr3:197109376-197111074:-|2.311508122671064|0.0420736881382608|5.78|151.0|83|1|anti-sense REV__L1M4_dup4208|chr3:197109376-197111074:-|2.311508122671064|0.0420736881382608|5.78|151.0|83|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 526.2931518554688 2 526.810585 1051.60662 0.352 0.00018544 -0.6617 -0.00034859 -0.3097 -0.00016315 527.3127445697166 34.711 0.053368 38.226 38.207 38.261 3.5144 7 5 2 0 0 0 0.12527 1 5591 5591 0 0 1 56950 + 47203 24431 29774 29788 54507 54507 0.08287807862393493 VFFYKYWF 8 Unmodified _VFFYKYWF_ 0 0 0 REV__L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|36|1|anti-sense REV__L1ME3B_dup8104|chr22:47082439-47083335:+|1.0475448070377726|0.015222261025629|6.1|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_2 3 600.2992553710938 2 600.299853 1198.58515 NaN NaN NaN NaN NaN NaN NaN 64.991 1 68.247 67.747 68.747 3.2556 0 0 0 0.40738 1 15519 15519 0.79363 0 1 + 47204 28089 29775 29789 54508 54508 -0.006195771663669802 VFGKEVTLE 9 Unmodified _VFGKEVTLE_ 0 0 0 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 MSMS UPN48_class_I_Rep_2 6 511.26947021484375 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 45.08 1 48.842 48.342 49.342 3.7617 0 0 0 0.089203 1 8666 8666 26.884 2.8631 1 47205 5069 29776 29790 54509 54509 0.03970920866140659 VFGKFSVIVLS 11 Unmodified _VFGKFSVIVLS_ 0 0 0 REV__L1M5_dup36984|chr11:43481319-43481827:-|1.3994054975594994|0.0894456349848463|3.97|150.0|24|1|anti-sense REV__L1M5_dup36984|chr11:43481319-43481827:-|1.3994054975594994|0.0894456349848463|3.97|150.0|24|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 598.3580322265625 2 598.357899 1194.70125 0.48424 0.00028975 -0.28918 -0.00017303 0.19507 0.00011672 598.3575658971765 53.473 0.42701 56.668 56.47 56.897 3.1948 42 25 2 0 0 0 0.65559 1 12117 12117 2.7352 0 1 98300 + 47206 24664 29777 29791 54510 54510 0.11168321613718035 VFGVIFTSFA 10 Unmodified _VFGVIFTSFA_ 0 0 0 L1MB7_dup1350|chr1:193062504-193063608:-|1.671496385827833|0.3793316224008751|2.14|151.0|51|1|anti-sense L1MB7_dup1350|chr1:193062504-193063608:-|1.671496385827833|0.3793316224008751|2.14|151.0|51|1|anti-sense L1MB7_dup1350|chr1:193062504-193063608:-|1.671496385827833|0.3793316224008751|2.14|151.0|51|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 544.2477416992188 2 544.294768 1086.57498 0.24696 0.00013442 -2.2393 -0.0012188 -1.9923 -0.0010844 544.2936927540109 48.828 0.062218 52.51 52.486 52.548 3.6819 6 4 2 0 0 0 0.84575 1 10563 10563 3.9444 0.66309 1 34279 47207 10699 29778 29792 54511 54511 0.03515815108426068 VFGYCKIKR 9 Unmodified _VFGYCKIKR_ 0 0 0 HERVK9-int_dup344|chr8:54074375-54076515:+|2.633493299356718|0.1344927142002491|4.29|151.0|18|1|sense;HERVK9-int_dup32|chr1:167317846-167322601:-|1.3720185809248138|0.0920830239133139|3.9|151.0|138|3|sense;HERVK9-int_dup313|chr7:152038616-152040933:-|1.1644613920390687|0.0517684275163903|4.49|151.0|12|1|sense;HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|128|3|sense HERVK9-int_dup344|chr8:54074375-54076515:+|2.633493299356718|0.1344927142002491|4.29|151.0|18|1|sense HERVK9-int_dup344|chr8:54074375-54076515:+|2.633493299356718|0.1344927142002491|4.29|151.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 557.31640625 2 557.315512 1112.61647 NaN NaN NaN NaN NaN NaN NaN 32.256 1 35.711 35.211 36.211 3.4547 0 0 0 0.40038 1 5564 5564 0.6015 0 1 47208 8316 29779 29793 54512 54512 0.06466672596093304 VFGYHGYTF 9 Unmodified _VFGYHGYTF_ 0 0 0 nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-MSMS UPN48_class_I_Rep_2 6 545.753662109375 2 545.753267 1089.49198 0.56545 0.00030859 -0.0069881 -3.8138E-06 0.55846 0.00030478 545.7532167689576 59.532 0.6313 63.019 62.678 63.31 3.4868 78 44 2 0 0 0 0.081857 1 13111 13111 38.151 13.477 1 158820 47209 3243 29780 29794 54513 54513 -0.049185016195679054 VFGYHGYTF 9 Unmodified _VFGYHGYTF_ 0 0 0 nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 545.753267 1089.49198 0.58085 0.000317 -0.097988 -5.3477E-05 0.48286 0.00026352 545.753146578671 59.596 0.65011 63.076 62.787 63.438 3.4801 0.087289 -0.0002072 NaN 38.151 80 47 3 NaN NaN NaN NaN 0 NaN NaN 0 183870 47210 3243 29780 29794 -0.049185016195679054 VFGYHGYTF 9 Unmodified _VFGYHGYTF_ 0 0 0 nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 545.753267 1089.49198 0.44193 0.00024118 0.31906 0.00017413 0.76099 0.00041531 545.7533210596944 59.349 0.68005 62.872 62.554 63.234 3.5231 -0.11729 0.00024801 NaN 38.151 82 47 2 NaN NaN NaN NaN 0 NaN NaN 0 187010 47211 3243 29780 29794 -0.049185016195679054 VFHHIFFI 8 Unmodified _VFHHIFFI_ 0 0 0 L1PB2_dup196|chr1:247168558-247168995:+|1.352528569066477|0.1044855046667334|3.69|151.0|35|3|anti-sense L1PB2_dup196|chr1:247168558-247168995:+|1.352528569066477|0.1044855046667334|3.69|151.0|35|3|anti-sense L1PB2_dup196|chr1:247168558-247168995:+|1.352528569066477|0.1044855046667334|3.69|151.0|35|3|anti-sense MSMS UPN47_class_I_Rep_1 2 530.2943725585938 2 530.292362 1058.57017 NaN NaN NaN NaN NaN NaN NaN 25.018 1 28.768 28.268 29.268 3.7495 0 0 0 0.40738 1 3368 3368 0.79363 0 1 47212 15229 29781 29795 54514 54514 0.04322975756326741 VFHHKLIG 8 Unmodified _VFHHKLIG_ 0 0 0 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 MSMS UPN46_class_I_Rep_3 1 475.3092346191406 2 475.782162 949.549771 NaN NaN NaN NaN NaN NaN NaN 16.042 1 16.042 15.542 16.542 0 0 0 0 0.40798 1 1025 1025 0 0 1 47213 5621 29782 29796 54515 54515 0.07297805096527554 VFHLRSPLGQY 11 Unmodified _VFHLRSPLGQY_ 0 0 0 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 MULTI-MSMS UPN48_class_I_Rep_3 7 439.5751647949219 3 439.575178 1315.70371 0.054034 2.3752E-05 -0.25207 -0.0001108 -0.19803 -8.7051E-05 439.5750427030806 37.451 1.2253 41.114 40.644 41.869 3.663 237 126 2 0 0 0 0.65674 1 6443 6443 2.6312 2.6312 1 209620 47214 2944 29783 29797 54516 54516 0.058481700713628015 VFHLTDFN 8 Unmodified _VFHLTDFN_ 0 0 0 REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|312|3|anti-sense REV__L1ME2_dup10985|chr16:55519537-55523925:+|9.990444173375806|0.0940862328144895|6.73|151.0|312|3|anti-sense MSMS UPN48_class_I_Rep_1 5 496.7446594238281 2 496.745442 991.476331 NaN NaN NaN NaN NaN NaN NaN 63.501 1 66.959 66.459 67.459 3.4578 0 0 0 0.40738 1 14301 14301 0.79363 0 1 + 47215 27821 29784 29798 54517 54517 -0.019747881366356523 VFHVKFLC 8 Unmodified _VFHVKFLC_ 0 0 0 REV__L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|363|3|anti-sense REV__L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|363|3|anti-sense MSMS UPN48_class_I_Rep_1 5 497.2545166015625 2 496.772948 991.531344 NaN NaN NaN NaN NaN NaN NaN 61.481 1 64.948 64.448 65.448 3.4678 0 0 0 0.40581 1 13681 13681 2.8892 0 1 + 47216 29028 29785 29799 54518 54518 0.03523927130311222 VFHYYWTM 8 Unmodified _VFHYYWTM_ 0 0 0 REV__L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|160|2|anti-sense REV__L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|160|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.7575073242188 2 573.757495 1145.50044 0.39867 0.00022874 -1.0806 -0.00062002 -0.68196 -0.00039128 573.756930313306 46.524 0.56814 50.043 49.721 50.289 3.5192 45 34 2 0 0 0 0.82752 1 9061 9061 5.7604 0 1 203350 + 47217 25518 29786 29800 54519 54519 -0.06649270974617139 VFIAHYLIL 9 Unmodified _VFIAHYLIL_ 0 0 0 REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15 REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15 MSMS UPN48_class_I_Rep_3 7 544.8277587890625 2 544.828778 1087.643 NaN NaN NaN NaN NaN NaN NaN 72.811 1 76.348 75.848 76.848 3.5373 0 0 0 0.3264 1 16997 16997 9.3474 0 1 + 47218 18193 29787 29801 54520 54520 0.10268684759080315 VFIDKQTNL 9 Unmodified _VFIDKQTNL_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000048740|O95319-5|CELF2 MSMS UPN48_class_I_Rep_1 5 539.301513671875 2 539.300581 1076.58661 NaN NaN NaN NaN NaN NaN NaN 43.611 1 47.121 46.621 47.621 3.5103 0 0 0 0.2408 1 8204 8204 13.906 0 1 47219 898;3531 29788 29802 54521 54521 0.05138012131760661 VFIDKQTNL 9 Unmodified _VFIDKQTNL_ 0 0 0 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000048740|O95319-5|CELF2 MULTI-MSMS UPN48_class_I_Rep_3 7 539.301513671875 2 539.300581 1076.58661 0.47628 0.00025686 0.00075854 4.0908E-07 0.47704 0.00025727 539.300328570888 43.511 0.59544 47.15 46.897 47.492 3.6385 66 41 2 0 0 0 0.28552 1 8096 8096 14.838 1.7958 1 143820 47220 898;3531 29788 29802 54522 54522 0.05138012131760661 VFIELFWE 8 Unmodified _VFIELFWE_ 0 0 0 REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|147|2|anti-sense REV__L1M4_dup7452|chr7:35858980-35861592:-|1.0995328909396065|0.0299416441512609|5.2|151.0|147|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.2830200195312 2 541.781493 1081.54843 0.38222 0.00020708 -0.26053 -0.00014115 0.12168 6.5926E-05 541.78127246001 47.772 0.83982 51.294 51.098 51.938 3.5219 93 60 2 0 0 0 0.82752 1 9554 9554 2.3027 0.4585 1 247760 + 47221 24445 29789 29803 54523 54523 0.010921262170768387 VFIGNLNTL 9 Unmodified _VFIGNLNTL_ 0 0 0 nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000556181.1_1_14:58987979-58988105:+|nuORF nc|ENSG00000092199|P07910-4|HNRNPC nc|ENSG00000092199|P07910-4|HNRNPC MSMS UPN48_class_I_Rep_3 7 495.7854309082031 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 72.235 1 75.762 75.262 76.262 3.5266 0 0 0 0.2408 1 16826 16826 13.906 3.0821 1 47222 1388 29790 29804 54524 54524 0.05938644448622199 VFIHKFHV 8 Unmodified _VFIHKFHV_ 0 0 0 REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|43|2|anti-sense REV__L1M4_dup11062|chrX:72420581-72421226:-|1.264984366344628|0.0105913873484092|6.9|150.0|43|2|anti-sense MSMS UPN47_class_I_Rep_3 4 513.7978515625 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 94.843 1 98.25 97.75 98.75 3.4068 0 0 0 0.40738 1 23595 23595 0.79363 0 1 + 47223 24352 29791 29805 54525 54525 0.06930378130596182 VFIIAIFHF 9 Unmodified _VFIIAIFHF_ 0 0 0 L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|358|3|anti-sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|358|3|anti-sense L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|358|3|anti-sense MSMS UPN48_class_I_Rep_2 6 553.824462890625 2 553.823495 1105.63244 NaN NaN NaN NaN NaN NaN NaN 65.273 1 68.753 68.253 69.253 3.4792 0 0 0 0.3264 1 14825 14825 9.3474 4.1168 1 47224 9286 29792 29806 54526 54526 0.08384702104649477 VFIKFSNLR 9 Unmodified _VFIKFSNLR_ 0 0 0 REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|21|2|anti-sense REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|21|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.27068 0.00015221 -0.26928 -0.00015143 0.0013961 7.8509E-07 562.3345547976245 33.929 0.045845 33.929 33.917 33.963 0 6 3 2 0 0 0 0.50088 1 6001 6001 0.52476 0 1 419850 + 47225 17316 29793 29807 54527 54527 0.09854301502264207 VFIKFSNLR 9 Unmodified _VFIKFSNLR_ 0 0 0 REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|21|2|anti-sense REV__Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|21|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.3326 0.00018703 -0.35938 -0.00020209 -0.026772 -1.5055E-05 562.3345339778591 36.767 0.075386 36.767 36.71 36.785 0 6 5 2 0 0 0 0.50088 1 6850 6850 0.52476 0 1 199470 + 47226 17316 29793 29807 54528 54528 0.09854301502264207 VFILLFWSLK 10 Unmodified _VFILLFWSLK_ 0 0 0 L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|124|2|anti-sense L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|124|2|anti-sense L1MA5_dup882|chr3:130874984-130877115:-|4.873529700806493|0.0428565679042478|6.83|151.0|124|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 633.3702392578125 2 633.38646 1264.75837 0.49536 0.00031376 1.2751 0.00080765 1.7705 0.0011214 633.3871222206097 85.995 0.52337 89.701 89.362 89.885 3.7058 80 55 2 0 0 0 0.56273 1 20426 20426 1.6526 0 1 146660 47227 9925 29794 29808 54529 54529 0.13657788890077427 VFILRTHP 8 Unmodified _VFILRTHP_ 0 0 0 REV__AluJb_dup54244|chr8:27346256-27346560:+|1.954275049167354|0.0157364164478904|6.96|151.0|17|2|anti-sense REV__AluJb_dup54244|chr8:27346256-27346560:+|1.954275049167354|0.0157364164478904|6.96|151.0|17|2|anti-sense MSMS UPN47_class_I_Rep_3 4 491.79595947265625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 66.578 1 69.763 69.263 70.263 3.1853 0 0 0 0.40625 1 16067 16067 2.3027 0 1 + 47228 16953 29795 29809 54530 54530 0.08446074267999393 VFILWADH 8 Unmodified _VFILWADH_ 0 0 0 REV__AluSx1_dup108629|chr19:49488701-49489005:-|1.6006793775795178|0.2958335714750313|2.44|151.0|11|1|anti-sense REV__AluSx1_dup108629|chr19:49488701-49489005:-|1.6006793775795178|0.2958335714750313|2.44|151.0|11|1|anti-sense MSMS UPN47_class_I_Rep_2 3 500.7654113769531 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 113.13 1 116.65 116.15 117.15 3.5171 0 0 0 0.40738 1 27504 27504 0.79363 0 1 + 47229 17166 29796 29810 54531 54531 0.018023926226987896 VFIMFPVF 8 Unmodified _VFIMFPVF_ 0 0 0 L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|119|3|anti-sense L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|119|3|anti-sense L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|119|3|anti-sense MSMS UPN48_class_I_Rep_2 6 500.2710876464844 2 500.27225 998.529947 NaN NaN NaN NaN NaN NaN NaN 21.93 1 25.576 25.076 26.076 3.6459 0 0 0 0.40738 1 2154 2154 0.79363 0 1 47230 8891 29797 29811 54532 54532 0.03062293041546127 VFIMRSCKY 9 Unmodified _VFIMRSCKY_ 0 0 0 REV__L1MB3_dup7242|chr8:6631301-6632353:+|1.5878632855078605|0.139166911224376|3.51|151.0|67|3|anti-sense REV__L1MB3_dup7242|chr8:6631301-6632353:+|1.5878632855078605|0.139166911224376|3.51|151.0|67|3|anti-sense MSMS UPN47_class_I_Rep_2 3 573.7952270507812 2 573.793555 1145.57256 NaN NaN NaN NaN NaN NaN NaN 28.657 1 32.155 31.655 32.655 3.4986 0 0 0 0.40038 1 4477 4477 0.6015 0 1 + 47231 25913 29798 29812 54533 54533 0.005593201074816534 VFIPHMAPI 9 Unmodified _VFIPHMAPI_ 0 0 0 L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|50|3|anti-sense L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|50|3|anti-sense L1M4c_dup1043|chr5:137918080-137918859:-|1.3341015044572218|0.1390004271373013|3.26|151.0|50|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.787109375 2 512.786056 1023.55756 0.044193 2.2662E-05 1.5049 0.00077168 1.5491 0.00079434 513.2880164648719 65.348 0.55444 68.604 68.358 68.913 3.2556 54 40 2 0 0 0 0.44858 1 15664 15664 5.2307 1.2863 1 64012 47232 9030 29799 29813 54534 54534 0.046721963017716917 VFIQRSELL 9 Unmodified _VFIQRSELL_ 0 0 0 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 MULTI-MSMS UPN47_class_I_Rep_3 4 552.8226318359375 2 552.824224 1103.63389 0.43774 0.000242 -0.037639 -2.0808E-05 0.4001 0.00022119 552.8240672170418 68.31 0.89291 71.507 71.184 72.077 3.1977 121 63 3 0 0 0 0.32682 1 16720 16720 12.241 12.241 1 202100 47233 1741 29800 29814 54535 54535 0.08622291402775772 VFITMQKGQL 10 Unmodified _VFITMQKGQL_ 0 0 0 REV__Charlie1a_dup4097|chr12:6990947-6991915:-|2.094660113775777|0.1260027628239914|4.06|151.0|2|1|sense REV__Charlie1a_dup4097|chr12:6990947-6991915:-|2.094660113775777|0.1260027628239914|4.06|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 582.8274536132812 2 582.825909 1163.63727 NaN NaN NaN NaN NaN NaN NaN 31.335 1 34.634 34.134 35.134 3.2991 0 0 0 0.53105 1 5325 5325 5.2969 1.3525 1 + 47234 17323 29801 29815 54536 54536 0.06199218185133759 VFIVEEIF 8 Unmodified _VFIVEEIF_ 0 0 0 L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|122|2|anti-sense L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|122|2|anti-sense L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|122|2|anti-sense MSMS UPN46_class_I_Rep_3 1 498.2760009765625 2 498.276044 994.537535 NaN NaN NaN NaN NaN NaN NaN 67.361 1 67.361 66.861 67.861 0 0 0 0 0.4032 1 15332 15332 6.3541 0 1 47235 9522 29802 29816 54537 54537 0.04004723842797375 VFIVRTMS 8 Unmodified _VFIVRTMS_ 0 0 0 REV__L1ME2_dup489|chr1:96758128-96759787:+|1.0502003312405543|0.0478826300053387|4.46|151.0|123|3|anti-sense REV__L1ME2_dup489|chr1:96758128-96759787:+|1.0502003312405543|0.0478826300053387|4.46|151.0|123|3|anti-sense MSMS UPN48_class_I_Rep_3 7 476.7493896484375 2 476.767863 951.521173 NaN NaN NaN NaN NaN NaN NaN 31.618 1 35.319 34.819 35.819 3.7015 0 0 0 0.40738 1 4703 4703 0.79363 0 1 + 47236 27860 29803 29817 54538 54538 0.04347319405064809 VFIWFRCHV 9 Unmodified _VFIWFRCHV_ 0 0 0 REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|69|2|anti-sense REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|69|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 603.815185546875 2 603.815679 1205.6168 -0.03383 -2.0427E-05 -0.88805 -0.00053622 -0.92188 -0.00055665 603.8150310850631 31.98 0.55108 35.699 35.397 35.948 3.7191 76 43 2 0 0 0 0.45688 4 5420 5370;5420;5461;5491 4.756 0.81161 1 88795 + 47237 29648 29804 29818 54539;54540;54541;54542 54540 0.022220923159238737 VFIWFRCHV 9 Unmodified _VFIWFRCHV_ 0 0 0 REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|69|2|anti-sense REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_2 3 603.8152465820312 2 603.815679 1205.6168 NaN NaN NaN NaN NaN NaN NaN 31.984 1 35.453 34.953 35.953 3.4691 0 0 0 0.39428 1 5485 5485 2.0598 0.21551 1 + 47238 29648 29804 29818 54543 54543 0.022220923159238737 VFIWFRCHV 9 Unmodified _VFIWFRCHV_ 0 0 0 REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|69|2|anti-sense REV__L1PB1_dup7077|chr9:41134855-41136318:-|2.31987037960347|0.3944946164997017|2.56|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_3 4 603.8151245117188 2 603.815679 1205.6168 NaN NaN NaN NaN NaN NaN NaN 32.189 1 35.476 34.976 35.976 3.2867 0 0 0 0.38299 1 5584 5584 4.756 0.42677 1 + 47239 29648 29804 29818 54544 54544 0.022220923159238737 VFKCSQRLY 9 Unmodified _VFKCSQRLY_ 0 0 0 L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|16|2|sense L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|16|2|sense L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 572.2881469726562 2 572.302601 1142.59065 NaN NaN NaN NaN NaN NaN NaN 54.008 1 57.59 57.09 58.09 3.5817 0 0 0 0.34056 1 11374 11374 8.5933 2.2392 1 47240 12379 29805 29819 54545 54545 0.025057783538386502 VFKFADLKK 9 Unmodified _VFKFADLKK_ 0 0 0 L1MB2_dup1335|chr3:25648880-25649799:+|1.8335661926017652|0.0825919136017333|4.47|151.0|50|2|anti-sense L1MB2_dup1335|chr3:25648880-25649799:+|1.8335661926017652|0.0825919136017333|4.47|151.0|50|2|anti-sense L1MB2_dup1335|chr3:25648880-25649799:+|1.8335661926017652|0.0825919136017333|4.47|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_1 5 548.2942504882812 2 548.331685 1094.64882 NaN NaN NaN NaN NaN NaN NaN 41.594 1 45.1 44.6 45.6 3.506 0 0 0 0.38916 1 7599 7599 3.2813 0.28607 1 47241 10202 29806 29820 54546 54546 0.10527783270754298 VFKFSLSMR 9 Unmodified _VFKFSLSMR_ 0 0 0 MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|20|1|anti-sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|20|1|anti-sense MLT1B_dup1935|chr2:113915131-113915539:-|1.0168378985134767|0.0210876473279938|5.59|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_3 7 557.8067626953125 2 557.807519 1113.60049 NaN NaN NaN NaN NaN NaN NaN 30.492 1 34.206 33.706 34.706 3.7146 0 0 0 0.39428 1 4405 4405 2.0598 0 1 47242 16275 29807 29821 54547 54547 0.04822966359211023 VFKHLLSFI 9 Unmodified _VFKHLLSFI_ 0 0 0 REV__L1P3b_dup33|chr7:37762982-37764435:+|1.1918532753262188|0.0973249045489533|3.61|151.0|64|3|anti-sense REV__L1P3b_dup33|chr7:37762982-37764435:+|1.1918532753262188|0.0973249045489533|3.61|151.0|64|3|anti-sense MSMS UPN47_class_I_Rep_3 4 552.82421875 2 552.334227 1102.6539 NaN NaN NaN NaN NaN NaN NaN 68.964 1 72.162 71.662 72.662 3.1977 0 0 0 0.38478 1 16789 16789 4.3292 0 1 + 47243 28903 29808 29822 54548 54548 0.10668087133376503 VFKIRSLFRRL 11 Unmodified _VFKIRSLFRRL_ 0 0 0 REV__ENSG00000084444|ENST00000197268|FAM234B REV__ENSG00000084444|ENST00000197268|FAM234B MSMS UPN48_class_I_Rep_1 5 478.9748840332031 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 47.388 1 50.91 50.41 51.41 3.5219 0 0 0 0.38417 1 9360 9360 0.40827 0.31342 1 + 47244 17942 29809 29823 54549 54549 0.19872965947160992 VFKKKIIV 8 Unmodified _VFKKKIIV_ 0 0 0 REV__L1MC5_dup6535|chr7:101862902-101863332:-|1.8913281789723004|0.0060429884524165|8.29|151.0|30|3|anti-sense REV__L1MC5_dup6535|chr7:101862902-101863332:-|1.8913281789723004|0.0060429884524165|8.29|151.0|30|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.8423156738281 2 487.841688 973.668823 0.17354 8.466E-05 1.1789 0.0005751 1.3524 0.00065976 487.84253978983884 78.525 0.02681 82.06 82.046 82.073 3.5352 5 3 2 0 0 0 0.82752 1 18729 18729 0 0 1 20821 + 47245 27091 29810 29824 54550 54550 0.18093579001379112 VFKPKEKS 8 Unmodified _VFKPKEKS_ 0 0 0 ENST00000515608.5_1_8:6476566-6478541:-|nuORF ENST00000515608.5_1_8:6476566-6478541:-|nuORF ENST00000515608.5_1_8:6476566-6478541:-|nuORF MSMS UPN48_class_I_Rep_2 6 481.7875061035156 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 112.8 1 116.47 115.97 116.97 3.6648 0 0 0 0.4044 1 26892 26892 4.756 0 1 47246 7207 29811 29825 54551 54551 0.07734948311235712 VFKPLLPS 8 Unmodified _VFKPLLPS_ 0 0 0 L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|7|1|sense L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|7|1|sense L1PB1_dup7210|chr9:92557943-92559647:-|1.7269718508522516|0.0127940276789632|7.08|150.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 450.7829895019531 2 450.781296 899.54804 NaN NaN NaN NaN NaN NaN NaN 54.702 1 58.21 57.71 58.71 3.5082 0 0 0 0.40404 1 11607 11607 5.2307 0 1 47247 15195 29812 29826 54552 54552 0.09424751287906474 VFKPPIAMK 9 Unmodified _VFKPPIAMK_ 0 0 0 REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|22|2|sense REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 515.807861328125 2 515.809531 1029.60451 NaN NaN NaN NaN NaN NaN NaN 87.709 1 91.328 90.828 91.828 3.6187 0 0 0 0.39518 1 21022 21022 1.8442 0.19162 1 + 47248 26182 29813 29827 54553 54553 0.09089055852905403 VFKPPIAMK 9 Unmodified _VFKPPIAMK_ 0 0 0 REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|22|2|sense REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|22|2|sense MSMS UPN48_class_I_Rep_3 7 515.8068237304688 2 515.809531 1029.60451 NaN NaN NaN NaN NaN NaN NaN 87.387 1 91.177 90.677 91.677 3.7905 0 0 0 0.39518 1 20737 20737 1.8442 0.19162 1 + 47249 26182 29813 29827 54554 54554 0.09089055852905403 VFKPRPGRA 9 Unmodified _VFKPRPGRA_ 0 0 0 ENST00000586061.1_1_19:783197-784896:+|nuORF ENST00000586061.1_1_19:783197-784896:+|nuORF ENST00000586061.1_1_19:783197-784896:+|nuORF MSMS UPN48_class_I_Rep_3 7 514.310546875 2 514.311618 1026.60868 NaN NaN NaN NaN NaN NaN NaN 44.79 1 48.428 47.928 48.928 3.6372 0 0 0 0.39518 1 8502 8502 1.8442 0.19162 1 47250 7583 29814 29828 54555 54555 0.0964428139084248 VFKRRHLC 8 Unmodified _VFKRRHLC_ 0 0 0 L1PA3_dup9639|chr15:62001519-62005683:-|2.798332893178889|0.1231323002917763|4.51|151.0|111|3|sense L1PA3_dup9639|chr15:62001519-62005683:-|2.798332893178889|0.1231323002917763|4.51|151.0|111|3|sense L1PA3_dup9639|chr15:62001519-62005683:-|2.798332893178889|0.1231323002917763|4.51|151.0|111|3|sense MSMS UPN48_class_I_Rep_2 6 530.243896484375 2 529.805645 1057.59674 NaN NaN NaN NaN NaN NaN NaN 24.224 1 27.864 27.364 28.364 3.6397 0 0 0 0.40798 1 2778 2778 0 0 1 47251 14294 29815 29829 54556 54556 0.07024341376018128 VFKRRLAIYRI 11 Unmodified _VFKRRLAIYRI_ 0 0 0 REV__MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|107|2|anti-sense REV__MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|107|2|anti-sense MSMS UPN48_class_I_Rep_3 7 478.9747619628906 3 478.973384 1433.89832 NaN NaN NaN NaN NaN NaN NaN 102.65 1 106.43 105.93 106.93 3.776 0 0 0 0.38417 1 24254 24254 1.3296 0 1 + 47252 31444 29816 29830 54557 54557 0.19872965947160992 VFKSGETTY 9 Unmodified _VFKSGETTY_ 0 0 0 nc|ENSG00000159459|Q8IWV7-2|UBR1;ENSG00000159459.12,UBR1,chr15,-,I40.1,42970608,42976716|47|6.8|2|intron;ENSG00000159459|ENST00000290650|UBR1 nc|ENSG00000159459|Q8IWV7-2|UBR1 nc|ENSG00000159459|Q8IWV7-2|UBR1 MSMS UPN46_class_I_Rep_3 1 516.2565307617188 2 516.25584 1030.49713 NaN NaN NaN NaN NaN NaN NaN 32.451 1 32.451 31.951 32.951 0 0 0 0 0.31276 1 5553 5553 10.074 0.72649 1 47253 3839 29817 29831 54558 54558 -0.016902425476018834 VFLDRDKVL 9 Unmodified _VFLDRDKVL_ 0 0 0 AluSz6_dup17080|chr6:135204307-135204602:-|1.8764371768530537|0.135270481181399|3.79|151.0|18|3|anti-sense AluSz6_dup17080|chr6:135204307-135204602:-|1.8764371768530537|0.135270481181399|3.79|151.0|18|3|anti-sense AluSz6_dup17080|chr6:135204307-135204602:-|1.8764371768530537|0.135270481181399|3.79|151.0|18|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.8246459960938 2 552.824224 1103.63389 0.43774 0.000242 -0.037639 -2.0808E-05 0.4001 0.00022119 552.8240672170418 68.31 0.89291 71.507 71.184 72.077 3.1977 121 63 3 0 0 0 0.23293 1 16533 16533 18.146 1.0335 1 202100 47254 382 29818 29832 54559 54559 0.08622291402775772 VFLDSIAARI 10 Unmodified _VFLDSIAARI_ 0 0 0 REV__Tigger1_dup4097|chr5:65511090-65512758:+|2.9161176559199675|0.0382606060408949|6.25|150.0|84|2|anti-sense REV__Tigger1_dup4097|chr5:65511090-65512758:+|2.9161176559199675|0.0382606060408949|6.25|150.0|84|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 552.825439453125 2 552.824224 1103.63389 0.37521 0.00020742 -0.22026 -0.00012177 0.15495 8.5659E-05 552.8240374872229 68.41 0.42635 71.775 71.689 72.116 3.3646 38 32 2 0 0 0 0.34027 1 16497 16497 24.991 3.454 1 102670 + 47255 32434 29819 29833 54560 54560 0.08622291402753035 VFLEEHLVL 9 Unmodified _VFLEEHLVL_ 0 0 0 ENST00000431775.1_1_20:1141504-1141783:+|nuORF ENST00000431775.1_1_20:1141504-1141783:+|nuORF ENST00000431775.1_1_20:1141504-1141783:+|nuORF MSMS UPN48_class_I_Rep_3 7 549.7953491210938 2 549.813325 1097.6121 NaN NaN NaN NaN NaN NaN NaN 71.012 1 74.531 74.031 75.031 3.5185 0 0 0 0.3264 1 16461 16461 9.3474 1.1919 1 47256 6732 29820 29834 54561 54561 0.06719486654174034 VFLFAMFL 8 Unmodified _VFLFAMFL_ 0 0 0 ENSG00000162630|ENST00000367434|B3GALT2 ENSG00000162630|ENST00000367434|B3GALT2 ENSG00000162630|ENST00000367434|B3GALT2 MSMS UPN48_class_I_Rep_2 6 494.27105712890625 2 494.27225 986.529947 NaN NaN NaN NaN NaN NaN NaN 47.549 1 51.285 50.785 51.785 3.7361 0 0 0 0.40581 1 9403 9403 2.8892 0 1 47257 3947 29821 29835 54562 54562 0.0361429304153944 VFLFVDILP 9 Unmodified _VFLFVDILP_ 0 0 0 L1M4_dup9837|chr9:77776240-77776817:+|1.3748479223925845|0.0150267124871935|6.52|151.0|31|2|anti-sense L1M4_dup9837|chr9:77776240-77776817:+|1.3748479223925845|0.0150267124871935|6.52|151.0|31|2|anti-sense L1M4_dup9837|chr9:77776240-77776817:+|1.3748479223925845|0.0150267124871935|6.52|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 531.8169555664062 2 531.815336 1061.61612 NaN NaN NaN NaN NaN NaN NaN 80.275 1 83.644 83.144 84.144 3.3694 0 0 0 0.38299 1 19995 19995 4.756 1.7608 1 47258 8931 29822 29836 54563 54563 0.08777576147895161 VFLFWVHR 8 Unmodified _VFLFWVHR_ 0 0 0 REV__ENST00000440953.5_1_22:26943549-26986080:-|nuORF REV__ENST00000440953.5_1_22:26943549-26986080:-|nuORF MSMS UPN46_class_I_Rep_3 1 552.3109130859375 2 552.311087 1102.60762 NaN NaN NaN NaN NaN NaN NaN 77.13 1 77.13 76.63 77.63 0 0 0 0 0.40738 1 18020 18020 0.79363 0.10326 1 + 47259 22329 29823 29837 54564 54564 0.06042067021917319 VFLIHLRCIR 10 Unmodified _VFLIHLRCIR_ 0 0 0 ENST00000356537.8_1_8:27592247-27592454:-|nuORF ENST00000356537.8_1_8:27592247-27592454:-|nuORF ENST00000356537.8_1_8:27592247-27592454:-|nuORF MSMS UPN47_class_I_Rep_1 2 635.3843994140625 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 78.952 1 82.397 81.897 82.897 3.4456 0 0 0 0.53105 1 19648 19648 0.45834 0 1 47260 6288 29824 29838 54565 54565 0.1303400119552407 VFLIYGNI 8 Unmodified _VFLIYGNI_ 0 0 0 MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|114|3|sense;MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|65|2|sense;PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|48|3|sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|114|3|sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|114|3|sense MSMS UPN48_class_I_Rep_1 5 469.7705383300781 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 50.07 1 53.595 53.095 54.095 3.5246 0 0 0 0.40581 1 10187 10187 2.8892 0 1 47261 15954 29825 29839 54566 54566 0.056041609082285504 VFLKAGASF 9 Unmodified _VFLKAGASF_ 0 0 0 ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF MSMS UPN48_class_I_Rep_2 6 470.2682800292969 2 470.268553 938.522553 NaN NaN NaN NaN NaN NaN NaN 50.088 1 53.783 53.283 54.283 3.6946 0 0 0 0.11827 1 10190 10190 21.537 2.098 1 47262 6369 29826 29840 54567 54567 0.05083276765469691 VFLKAGASF 9 Unmodified _VFLKAGASF_ 0 0 0 ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF MSMS UPN48_class_I_Rep_3 7 470.2684326171875 2 470.268553 938.522553 NaN NaN NaN NaN NaN NaN NaN 50.242 1 53.863 53.363 54.363 3.621 0 0 0 0.029402 1 10172 10172 45.7 18.071 1 47263 6369 29826 29840 54568 54568 0.05083276765469691 VFLKAGASF 9 Unmodified _VFLKAGASF_ 0 0 0 ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF MSMS UPN48_class_I_Rep_3 7 470.2687683105469 2 470.268553 938.522553 NaN NaN NaN NaN NaN NaN NaN 50.387 1 54.008 53.508 54.508 3.621 0 0 0 0.070158 1 10217 10217 31.268 11.829 1 47264 6369 29826 29840 54569 54569 0.05083276765469691 VFLLGRHA 8 Unmodified _VFLLGRHA_ 0 0 0 REV__ENSG00000173621|ENST00000309602|LRFN4 REV__ENSG00000173621|ENST00000309602|LRFN4 MSMS UPN47_class_I_Rep_3 4 456.7722473144531 2 456.774337 911.534121 NaN NaN NaN NaN NaN NaN NaN 18.596 1 21.951 21.451 22.451 3.3545 0 0 0 0.40625 1 1576 1576 2.3027 0 1 + 47265 20493 29827 29841 54570 54570 0.07481518579470503 VFLLSTLSGLG 11 Unmodified _VFLLSTLSGLG_ 0 0 0 ENST00000368445.9_1_1:154935654-154935813:-|nuORF ENST00000368445.9_1_1:154935654-154935813:-|nuORF ENST00000368445.9_1_1:154935654-154935813:-|nuORF MSMS UPN48_class_I_Rep_3 7 553.8244018554688 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 65.13 1 68.638 68.138 69.138 3.5077 0 0 0 0.38417 1 14695 14695 5.2969 0.39987 1 47266 6366 29828 29842 54571 54571 0.08971755825655237 VFLPKKHN 8 Unmodified _VFLPKKHN_ 0 0 0 L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|11|2|sense L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|11|2|sense L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 491.7964782714844 2 491.795269 981.575986 0.2869 0.00014109 1.3091 0.0006438 1.596 0.00078489 491.79591952665777 63.681 0.31292 67.139 66.92 67.233 3.4578 43 27 2 0 0 0 0.82752 1 14312 14312 2.5775 0 1 129970 47267 11422 29829 29843 54572 54572 0.08446074267988024 VFLPKKHN 8 Unmodified _VFLPKKHN_ 0 0 0 L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|11|2|sense L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|11|2|sense L1MC4_dup17449|chr12:26987473-26988180:+|2.6861372453217043|0.2316509865462879|3.54|151.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 491.7957458496094 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 65.003 1 68.482 67.982 68.982 3.4792 0 0 0 0.40604 1 14742 14742 2.5775 0 1 47268 11422 29829 29843 54573 54573 0.08446074267988024 VFLQFRITPK 10 Unmodified _VFLQFRITPK_ 0 0 0 REV__ENSG00000011405|ENST00000691414|PIK3C2A REV__ENSG00000011405|ENST00000691414|PIK3C2A MSMS UPN46_class_I_Rep_3 1 624.87548828125 2 624.876791 1247.73903 NaN NaN NaN NaN NaN NaN NaN 96.372 1 96.372 95.872 96.872 0 0 0 0 0.53105 1 23432 23432 3.2813 1.7994 1 + 47269 17580 29830 29844 54574 54574 0.1250683259916059 VFLQVRVEA 9 Unmodified _VFLQVRVEA_ 0 0 0 Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.8115844726562 2 530.811116 1059.60768 0.32394 0.00017195 0.35527 0.00018858 0.67921 0.00036053 530.8112174447501 56.288 0.57675 59.746 59.476 60.052 3.4572 52 29 2 0 0 0 0.30034 2 12792 12792;12832 13.906 0 1 112560 47270 522 29831 29845 54575;54576 54575 0.08026022231297247 VFLQVRVEA 9 Unmodified _VFLQVRVEA_ 0 0 0 Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.810791015625 2 530.811116 1059.60768 0.32592 0.000173 0.068668 3.645E-05 0.39459 0.00020945 530.8112028001099 56.482 0.48786 59.782 59.527 60.015 3.3009 43 28 3 0 0 0 0.43982 2 12902 12902;12952 5.7319 0 1 180410 47271 522 29831 29845 54577;54578 54577 0.08026022231297247 VFLQVRVEA 9 Unmodified _VFLQVRVEA_ 0 0 0 Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.8112182617188 2 530.811116 1059.60768 0.33139 0.0001759 0.22381 0.0001188 0.55519 0.0002947 530.811153330578 56.625 0.42752 59.797 59.562 59.99 3.1721 42 23 2 0 0 0 0.17897 5 13031 12974;12987;13031;13067;13076 22.736 0 1 105920 47272 522 29831 29845 54579;54580;54581;54582;54583 54581 0.08026022231297247 VFLQVRVEA 9 Unmodified _VFLQVRVEA_ 0 0 0 Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|7|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 530.811116 1059.60768 0.32394 0.00017195 0.35527 0.00018858 0.67921 0.00036053 530.8112174447501 56.288 0.57675 59.746 59.476 60.052 3.4572 -0.029586 0.0001501 NaN 22.736 52 29 2 NaN NaN NaN NaN 0 NaN NaN 0 112560 47273 522 29831 29845 0.08026022231297247 VFLRKTHLW 9 Unmodified _VFLRKTHLW_ 0 0 0 L1MC4_dup20777|chr16:11013969-11014479:-|1.544310767607012|0.1202045309157104|3.68|151.0|13|3|sense L1MC4_dup20777|chr16:11013969-11014479:-|1.544310767607012|0.1202045309157104|3.68|151.0|13|3|sense L1MC4_dup20777|chr16:11013969-11014479:-|1.544310767607012|0.1202045309157104|3.68|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 600.3539428710938 2 600.356025 1198.6975 NaN NaN NaN NaN NaN NaN NaN 12.948 1 12.948 12.448 13.448 0 0 0 0 0.40038 1 253 253 0.6015 0 1 47274 11453 29832 29846 54584 54584 0.10609696630513099 VFLRQDLTL 9 Unmodified _VFLRQDLTL_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I22.1,151128357,151132330|47|9.36|1|intron ENSG00000109686.19,SH3D19,chr4,-,I22.1,151128357,151132330|47|9.36|1|intron ENSG00000109686.19,SH3D19,chr4,-,I22.1,151128357,151132330|47|9.36|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 552.824462890625 2 552.824224 1103.63389 0.37521 0.00020742 -0.22026 -0.00012177 0.15495 8.5659E-05 552.8240374872229 68.41 0.42635 71.775 71.689 72.116 3.3646 38 32 2 0 0 0 0.37599 1 16596 16596 9.3831 0 1 102670 47275 1905 29833 29847 54585 54585 0.08622291402753035 VFLRQDLTL 9 Unmodified _VFLRQDLTL_ 0 0 0 ENSG00000109686.19,SH3D19,chr4,-,I22.1,151128357,151132330|47|9.36|1|intron ENSG00000109686.19,SH3D19,chr4,-,I22.1,151128357,151132330|47|9.36|1|intron ENSG00000109686.19,SH3D19,chr4,-,I22.1,151128357,151132330|47|9.36|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 552.8247680664062 2 552.824224 1103.63389 0.43774 0.000242 -0.037639 -2.0808E-05 0.4001 0.00022119 552.8240672170418 68.31 0.89291 71.507 71.184 72.077 3.1977 121 63 3 0 0 0 0.37599 1 16742 16742 9.3831 0 1 202100 47276 1905 29833 29847 54586 54586 0.08622291402753035 VFLRRMYI 8 Unmodified _VFLRRMYI_ 0 0 0 L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|162|1|anti-sense;L1PA8_dup5159|chrX:132445802-132452124:-|3.0261250863556803|0.1313666785370546|4.53|151.0|359|3|anti-sense L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|162|1|anti-sense L1PA7_dup6195|chr7:103108440-103112765:+|2.3409275509025376|0.2691789457503433|3.12|151.0|162|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.3184204101562 2 549.318054 1096.62156 0.49112 0.00026978 0.016287 8.9466E-06 0.5074 0.00027873 549.3180393797746 92.109 0.33313 95.512 95.366 95.699 3.4034 57 46 2 0 0 0 0.82752 1 22988 22988 0.79363 0 1 121850 47277 14867 29834 29848 54587 54587 0.07710976458724872 VFLSHYLLI 9 Unmodified _VFLSHYLLI_ 0 0 0 REV__L1MB7_dup14040|chr10:86444038-86444860:+|1.0079886324686766|0.2135661405586194|2.24|151.0|59|3|anti-sense REV__L1MB7_dup14040|chr10:86444038-86444860:+|1.0079886324686766|0.2135661405586194|2.24|151.0|59|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.8246459960938 2 552.826235 1103.63792 NaN NaN NaN NaN NaN NaN NaN 68.802 1 72.072 71.572 72.572 3.2696 0 0 0 0.28335 1 16672 16672 11.64 0 1 + 47278 26139 29835 29849 54588 54588 0.09024380896471484 VFLSTLSKTR 10 Unmodified _VFLSTLSKTR_ 0 0 0 L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|86|2|anti-sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|86|2|anti-sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|86|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 576.343505859375 2 576.342781 1150.67101 0.50589 0.00029157 -0.061652 -3.5532E-05 0.44424 0.00025603 576.342507452207 107.87 0.2914 111.41 111.34 111.63 3.5382 69 32 4 0 0 0 0.4965 1 26351 26351 12.241 0 1 12301000 47279 15299 29836 29850 54589 54589 0.10169962948521061 VFLSTLSKTR 10 Unmodified _VFLSTLSKTR_ 0 0 0 L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|86|2|anti-sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|86|2|anti-sense L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|86|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 576.342781 1150.67101 0.47922 0.0002762 0.056248 3.2418E-05 0.53547 0.00030861 576.3425827990493 107.84 0.15082 111.52 111.44 111.59 3.6783 0.048501 0.00021579 NaN 12.241 39 14 5 NaN NaN NaN NaN 0 NaN NaN 0 18903000 47280 15299 29836 29850 0.10169962948521061 VFLTRTNII 9 Unmodified _VFLTRTNII_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MULTI-MSMS UPN48_class_I_Rep_1 5 538.807861328125 2 538.826766 1075.63898 0.36886 0.00019875 -0.15859 -8.5453E-05 0.21027 0.0001133 538.8265797703389 50.384 0.95398 53.908 53.499 54.453 3.5246 145 61 3 0 0 0 0.32219 1 10449 10449 12.532 1.7076 1 433470 47281 2098 29837 29851 54590 54590 0.1041859526535518 VFLTSLQRL 9 Unmodified _VFLTSLQRL_ 0 0 0 L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|14|2|sense L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|14|2|sense L1M4_dup10042|chr9:95948605-95949729:+|1.7278373514929335|0.2821235077446528|2.61|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 538.808837890625 2 538.826766 1075.63898 0.43312 0.00023338 -0.33962 -0.00018299 0.093504 5.0382E-05 538.8265147777089 50.251 1.05 53.946 53.463 54.513 3.6946 153 66 3 0 0 0 0.3898 1 10400 10400 8.5933 0 1 374750 47282 8812 29838 29852 54591 54591 0.1041859526535518 VFLTSQNTII 10 Unmodified _VFLTSQNTII_ 0 0 0 MSTB-int_dup193|chr3:177005288-177006828:+|1.0008554921107458|0.05231561449912|4.26|151.0|68|2|anti-sense MSTB-int_dup193|chr3:177005288-177006828:+|1.0008554921107458|0.05231561449912|4.26|151.0|68|2|anti-sense MSTB-int_dup193|chr3:177005288-177006828:+|1.0008554921107458|0.05231561449912|4.26|151.0|68|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 568.3224487304688 2 568.321514 1134.62847 0.51197 0.00029096 0.041743 2.3724E-05 0.55371 0.00031469 568.3214647550869 70.041 0.54896 73.554 73.269 73.818 3.5128 51 43 2 0 0 0 0.56189 1 16156 16156 2.4985 0 1 138960 47283 16573 29839 29853 54592 54592 0.06654567820282864 VFLYKPVPV 9 Unmodified _VFLYKPVPV_ 0 0 0 REV__THE1D-int_dup858|chr5:80462583-80464173:-|1.5131866949306358|0.1197449451194748|3.66|151.0|88|3|anti-sense REV__THE1D-int_dup858|chr5:80462583-80464173:-|1.5131866949306358|0.1197449451194748|3.66|151.0|88|3|anti-sense MSMS UPN48_class_I_Rep_1 5 531.3228149414062 2 531.323328 1060.6321 NaN NaN NaN NaN NaN NaN NaN 52.027 1 55.55 55.05 56.05 3.5227 0 0 0 0.38299 1 10787 10787 4.756 1.8668 1 + 47284 32313 29840 29854 54593 54593 0.10421282384800179 VFMFLHYK 8 Unmodified _VFMFLHYK_ 0 0 0 REV__L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|174|2|anti-sense REV__L1PB1_dup11304|chr15:50101356-50105262:+|9.31074678103982|0.0089538272069526|10.02|151.0|174|2|anti-sense MSMS UPN47_class_I_Rep_3 4 542.7864379882812 2 542.786056 1083.55756 NaN NaN NaN NaN NaN NaN NaN 26.333 1 29.68 29.18 30.18 3.3478 0 0 0 0.40738 1 3835 3835 0.79363 0 1 + 47285 30318 29841 29855 54594 54594 0.019121963017823873 VFMVVVWSF 9 Unmodified _VFMVVVWSF_ 0 0 0 REV__L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|111|2|anti-sense REV__L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|111|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.2942504882812 2 557.293714 1112.57287 NaN NaN NaN NaN NaN NaN NaN 58.309 1 61.796 61.296 62.296 3.487 0 0 0 0.38478 1 12711 12711 4.3292 0 1 + 47286 24120 29842 29856 54595 54595 0.021090630989874626 VFMWRFPY 8 Unmodified _VFMWRFPY_ 0 0 0 REV__L1MDa_dup1997|chr5:70830664-70831813:+|1.5307802097374237|0.1351226721389003|3.5|149.0|69|2|anti-sense REV__L1MDa_dup1997|chr5:70830664-70831813:+|1.5307802097374237|0.1351226721389003|3.5|149.0|69|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.2816162109375 2 573.28368 1144.55281 NaN NaN NaN NaN NaN NaN NaN 52.577 1 56.136 55.636 56.636 3.5585 0 0 0 0.40404 1 11710 11710 5.2307 0.90143 1 + 47287 27508 29843 29857 54596 54596 -0.013686878409771452 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000485542.5_1_1:113162466-113192092:+|nuORF ENST00000485542.5_1_1:113162466-113192092:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 545.3286743164062 2 544.826766 1087.63898 0.4662 0.000254 0.031512 1.7169E-05 0.49771 0.00027117 544.826650277294 72.24 0.36166 75.713 75.407 75.768 3.4732 77 33 3 0 0 0 0.086321 2 16945 16907;16945 37.075 15.328 1 239600 47288 2185 29844 29858 54597;54598 54598 0.09866595265384603 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000485542.5_1_1:113162466-113192092:+|nuORF ENST00000485542.5_1_1:113162466-113192092:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 544.8267822265625 2 544.826766 1087.63898 0.46476 0.00025321 -0.11312 -6.163E-05 0.35164 0.00019158 544.8266877867861 72.341 0.34364 75.814 75.748 76.091 3.4732 53 28 3 0 0 0 0.061655 1 16982 16982 43.982 15.495 1 263160 47289 2185 29844 29858 54599 54599 0.09866595265384603 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000485542.5_1_1:113162466-113192092:+|nuORF ENST00000485542.5_1_1:113162466-113192092:+|nuORF MSMS UPN48_class_I_Rep_1 5 544.8270263671875 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 72.513 1 75.986 75.486 76.486 3.4732 0 0 0 0.072238 1 17023 17023 30.703 8.9568 1 47290 2185 29844 29858 54600 54600 0.09866595265384603 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000485542.5_1_1:113162466-113192092:+|nuORF ENST00000485542.5_1_1:113162466-113192092:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 544.8269653320312 2 544.826766 1087.63898 0.47697 0.00025987 -0.04502 -2.4528E-05 0.43195 0.00023534 544.8266407355064 72.262 0.79907 75.827 75.334 76.133 3.5645 167 81 3 0 0 0 0.029742 7 16869 16784;16806;16837;16869;16904;16941;16989 57.249 15.429 1 340000 47291 2185 29844 29858 54601;54602;54603;54604;54605;54606;54607 54604 0.09866595265384603 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000485542.5_1_1:113162466-113192092:+|nuORF ENST00000485542.5_1_1:113162466-113192092:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 544.8267822265625 2 544.826766 1087.63898 0.5398 0.0002941 -0.1634 -8.9026E-05 0.3764 0.00020507 544.826618946406 72.148 0.85994 75.674 75.212 76.072 3.5266 194 86 3 0 0 0 0.039218 6 16783 16712;16747;16783;16818;16852;16892 53.317 19.214 1 460580 47292 2185 29844 29858 54608;54609;54610;54611;54612;54613 54610 0.09866595265384603 VFNEGSYDY 9 Unmodified _VFNEGSYDY_ 0 0 0 ENST00000265069.12_1_5:32403296-32403368:-|nuORF ENST00000265069.12_1_5:32403296-32403368:-|nuORF ENST00000265069.12_1_5:32403296-32403368:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 546.7528076171875 2 547.227279 1092.44001 0.048514 2.6548E-05 -0.30873 -0.00016894 -0.26021 -0.0001424 547.2274470040421 41.95 0.049248 45.19 45.153 45.202 3.2394 5 3 2 0 0 0 0.12477 1 8559 8559 1.6526 0.17072 1 29532 47293 5994 29845 29859 54614 54614 -0.10251709824001409 VFNEGSYDY 9 Unmodified _VFNEGSYDY_ 0 0 0 ENST00000265069.12_1_5:32403296-32403368:-|nuORF ENST00000265069.12_1_5:32403296-32403368:-|nuORF ENST00000265069.12_1_5:32403296-32403368:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 547.227279 1092.44001 0.043504 2.3806E-05 -0.85225 -0.00046637 -0.80874 -0.00044257 547.7283924641805 41.613 0.063103 45.292 45.266 45.329 3.6792 0.051355 -0.00013091 NaN 1.6526 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 19174 47294 5994 29845 29859 -0.10251709824001409 VFNELLAR 8 Unmodified _VFNELLAR_ 0 0 0 ENST00000503313.1_1_4:149067883-149122244:-|nuORF ENST00000503313.1_1_4:149067883-149122244:-|nuORF ENST00000503313.1_1_4:149067883-149122244:-|nuORF MSMS UPN47_class_I_Rep_2 3 481.27728271484375 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 22.418 1 25.851 25.351 26.351 3.4336 0 0 0 0.40659 1 2658 2658 1.8442 1.0506 1 47295 7136 29846 29860 54615 54615 0.05741777651417124 VFNFLLIL 8 Unmodified _VFNFLLIL_ 0 0 0 ENST00000498717.2_1_3:143566691-143567164:-|nuORF;ENSG00000181804|ENST00000316549|SLC9A9 ENST00000498717.2_1_3:143566691-143567164:-|nuORF ENST00000498717.2_1_3:143566691-143567164:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 489.8062744140625 2 489.804771 977.59499 0.25097 0.00012292 -0.24361 -0.00011932 0.0073592 3.6046E-06 489.8059986086263 70.711 0.61015 73.994 73.711 74.321 3.2828 76 57 2 0 0 0 0.82752 1 17238 17238 0.79363 0 1 233860 47296 4929 29847 29861 54616 54616 0.105296108390462 VFNFLLIL 8 Unmodified _VFNFLLIL_ 0 0 0 ENST00000498717.2_1_3:143566691-143567164:-|nuORF;ENSG00000181804|ENST00000316549|SLC9A9 ENST00000498717.2_1_3:143566691-143567164:-|nuORF ENST00000498717.2_1_3:143566691-143567164:-|nuORF MSMS UPN48_class_I_Rep_2 6 489.80633544921875 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 83.553 1 87.235 86.735 87.735 3.6814 0 0 0 0.40604 1 19861 19861 2.5775 0 1 47297 4929 29847 29861 54617 54617 0.105296108390462 VFNFLLIL 8 Unmodified _VFNFLLIL_ 0 0 0 ENST00000498717.2_1_3:143566691-143567164:-|nuORF;ENSG00000181804|ENST00000316549|SLC9A9 ENST00000498717.2_1_3:143566691-143567164:-|nuORF ENST00000498717.2_1_3:143566691-143567164:-|nuORF MSMS UPN48_class_I_Rep_2 6 489.8067321777344 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 84.282 1 87.976 87.476 88.476 3.6937 0 0 0 0.40604 1 20058 20058 2.5775 0 1 47298 4929 29847 29861 54618 54618 0.105296108390462 VFNHKKLF 8 Unmodified _VFNHKKLF_ 0 0 0 REV__L1ME3_dup8059|chr17:67879982-67880607:-|2.101371020610058|0.0299971095941336|6.13|151.0|36|2|anti-sense REV__L1ME3_dup8059|chr17:67879982-67880607:-|2.101371020610058|0.0299971095941336|6.13|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.8029174804688 2 516.803094 1031.59164 NaN NaN NaN NaN NaN NaN NaN 89.03 1 92.859 92.359 93.359 3.8293 0 0 0 0.39819 1 21125 21125 8.5933 1.304 1 + 47299 27967 29848 29862 54619 54619 0.07710360785040393 VFNKKETE 8 Unmodified _VFNKKETE_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MSMS UPN47_class_I_Rep_1 2 497.74798583984375 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 119.03 1 122.63 122.13 123.13 3.6036 0 0 0 0.40625 1 29559 29559 2.3027 0 1 47300 3108 29849 29863 54620 54620 0.016094636892944436 VFNVLIDVPSL 11 Unmodified _VFNVLIDVPSL_ 0 0 0 REV__L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|99|1|anti-sense REV__L1MA3_dup3121|chr5:103143685-103146032:+|2.1590137463280743|0.0607839284620068|5.15|151.0|99|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 609.0380249023438 2 608.352814 1214.69108 0.53187 0.00032356 -2.5085 -0.001526 -1.9766 -0.0012025 608.8530045121009 107.37 0.09478 111.04 110.98 111.08 3.6724 7 5 2 0 0 0 22.551 1 26312 26312 8.7454 0 1 375910 + 47301 25014 29850 29864 54621 54621 0.0923171388847095 VFNYIDQFE 9 Unmodified _VFNYIDQFE_ 0 0 0 REV__ENSG00000085840|ENST00000371568|ORC1 REV__ENSG00000085840|ENST00000371568|ORC1 MSMS UPN46_class_I_Rep_3 1 587.7731323242188 2 587.774396 1173.53424 NaN NaN NaN NaN NaN NaN NaN 66.346 1 66.346 65.846 66.846 0 0 0 0 0.39518 1 15048 15048 1.8442 0 1 + 47302 17960 29851 29865 54622 54622 -0.04558571001894052 VFPAQISLSF 10 Unmodified _VFPAQISLSF_ 0 0 0 L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|88|2|anti-sense L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|88|2|anti-sense L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|88|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 555.206787109375 2 554.8055 1107.59645 0.45208 0.00025082 -0.381 -0.00021138 0.07108 3.9436E-05 554.8052260348863 67.947 0.37352 71.455 71.163 71.537 3.5077 47 34 2 0 0 0 0.84575 1 15531 15531 19.257 3.4098 1 126570 47303 9772 29852 29866 54623 54623 0.04695200137143729 VFPAQISLSF 10 Unmodified _VFPAQISLSF_ 0 0 0 L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|88|2|anti-sense L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|88|2|anti-sense L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|88|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 554.8055 1107.59645 0.50541 0.00028041 -0.40269 -0.00022342 0.10272 5.6989E-05 554.8050878290159 67.944 0.11716 71.452 71.35 71.468 3.5083 -0.001416 -2.2669E-05 NaN 19.257 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 98657 47304 9772 29852 29866 0.04695200137143729 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1 ENST00000477415.5_1_2:70443338-70451751:-|nuORF ENST00000477415.5_1_2:70443338-70451751:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 530.2611083984375 2 530.260925 1058.5073 0.32906 0.00017449 0.10176 5.3957E-05 0.43082 0.00022845 530.2609086124265 51.135 1.4714 54.66 53.991 55.463 3.5246 331 111 4 0 0 0 0.073198 5 10486 10447;10486;10529;10570;10650 40.239 6.1368 1 3342600 47305 2154 29853 29867 54624;54625;54626;54627;54628 54625 -0.019616348223962632 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1 ENST00000477415.5_1_2:70443338-70451751:-|nuORF ENST00000477415.5_1_2:70443338-70451751:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 530.2611083984375 2 530.260925 1058.5073 0.41275 0.00021887 0.041575 2.2046E-05 0.45433 0.00024091 530.2608778951931 50.932 1.4725 54.6 53.997 55.469 3.6679 315 108 4 0 0 0 0.066364 2 10514 10438;10514 41.956 7.8531 1 3029500 47306 2154 29853 29867 54629;54630 54630 -0.019616348223962632 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1 ENST00000477415.5_1_2:70443338-70451751:-|nuORF ENST00000477415.5_1_2:70443338-70451751:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 530.2611694335938 2 530.260925 1058.5073 0.37597 0.00019936 0.10399 5.5142E-05 0.47996 0.0002545 530.2609016211118 51.045 1.4158 54.656 54.064 55.48 3.6105 318 109 4 0 0 0 0.057664 4 10393 10393;10431;10473;10518 45.7 9.8794 1 3685300 47307 2154 29853 29867 54631;54632;54633;54634 54631 -0.019616348223962632 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 537.26904296875 2 537.26875 1072.52295 0.35544 0.00019097 0.10559 5.673E-05 0.46103 0.0002477 537.2687589153923 50.126 2.0644 53.651 52.902 54.966 3.5246 423 132 5 0 0 0 0.0065234 3 10207 10170;10207;10250 74.2 17.744 1 5351400 47308 3609 29854 29868 54635;54636;54637 54636 -0.010413483053298478 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 537.2689819335938 2 537.26875 1072.52295 0.41791 0.00022453 0.054342 2.9196E-05 0.47225 0.00025373 537.268732963649 50.007 1.9182 53.702 52.927 54.846 3.6946 405 121 5 0 0 0 0.022868 4 10105 10105;10145;10183;10222 61.602 17.744 1 5463200 47309 3609 29854 29868 54638;54639;54640;54641 54638 -0.010413483053298478 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 537.2689819335938 2 537.26875 1072.52295 0.46297 0.00024874 0.0004313 2.3173E-07 0.46341 0.00024897 537.2687016818568 50.128 2.1077 53.749 52.964 55.072 3.621 421 137 5 0 0 0 0.026395 4 10093 10052;10093;10133;10176 59.368 17.292 1 5351500 47310 3609 29854 29868 54642;54643;54644;54645 54643 -0.010413483053298478 VFPFGSLAW 9 Unmodified _VFPFGSLAW_ 0 0 0 REV__ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|120|1|anti-sense REV__ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|120|1|anti-sense MSMS UPN48_class_I_Rep_3 7 512.2825927734375 2 512.268553 1022.52255 NaN NaN NaN NaN NaN NaN NaN 100.04 1 103.89 103.39 104.39 3.8537 0 0 0 0.39428 1 23690 23690 2.0598 0 1 + 47311 23290 29855 29869 54646 54646 0.012192767654710224 VFPFSMPR 8 Unmodified _VFPFSMPR_ 0 0 0 L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|81|1|anti-sense L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|81|1|anti-sense L1MCa_dup1455|chr3:161109768-161111719:+|1.0659266236578069|0.3175433071941228|1.75|149.0|81|1|anti-sense MSMS UPN48_class_I_Rep_2 6 490.7543640136719 2 490.754756 979.494958 NaN NaN NaN NaN NaN NaN NaN 118.11 1 121.77 121.27 122.27 3.6627 0 0 0 0.40738 1 28311 28311 0.79363 0 1 47312 11783 29856 29870 54647 54647 0.0043905023359229745 VFPFSTRF 8 Unmodified _VFPFSTRF_ 0 0 0 MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 500.76568603515625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 111.81 1 111.81 111.31 112.31 0 0 0 0 0.40738 1 27581 27581 0.79363 0 1 47313 16000 29857 29871 54648 54648 0.018023926227101583 VFPFSTRF 8 Unmodified _VFPFSTRF_ 0 0 0 MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 500.7659606933594 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 119.72 1 119.72 119.22 120.22 0 0 0 0 0.40738 1 29768 29768 0.79363 0 1 47314 16000 29857 29871 54649 54649 0.018023926227101583 VFPFSTRF 8 Unmodified _VFPFSTRF_ 0 0 0 MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 500.7991943359375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 112.9 1 116.47 115.97 116.97 3.572 0 0 0 0.40738 1 27843 27843 0.79363 0 1 47315 16000 29857 29871 54650 54650 0.018023926227101583 VFPFSTRF 8 Unmodified _VFPFSTRF_ 0 0 0 MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 500.7660827636719 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 114.71 1 118.29 117.79 118.79 3.5809 0 0 0 0.40625 1 28356 28356 2.3027 0 1 47316 16000 29857 29871 54651 54651 0.018023926227101583 VFPFSTRF 8 Unmodified _VFPFSTRF_ 0 0 0 MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 500.76513671875 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 113.28 1 116.8 116.3 117.3 3.5171 0 0 0 0.40738 1 27548 27548 0.79363 0 1 47317 16000 29857 29871 54652 54652 0.018023926227101583 VFPFSTRF 8 Unmodified _VFPFSTRF_ 0 0 0 MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MER47A_dup1462|chrX:71548164-71548328:+|1.1576492095995667|0.0542331931619605|4.42|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 500.7657775878906 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 25.619 1 28.97 28.47 29.47 3.3509 0 0 0 0.40738 1 3629 3629 0.79363 0 1 47318 16000 29857 29871 54653 54653 0.018023926227101583 VFPHTYVV 8 Unmodified _VFPHTYVV_ 0 0 0 L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.261474609375 2 481.260728 960.506903 NaN NaN NaN NaN NaN NaN NaN 119.91 1 119.91 119.41 120.41 0 0 0 0 0.40604 1 29824 29824 2.5775 0 1 47319 14829 29858 29872 54654 54654 0.02506990248434704 VFPIVDLLF 9 Unmodified _VFPIVDLLF_ 0 0 0 REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|324|3|anti-sense REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|324|3|anti-sense MSMS UPN48_class_I_Rep_1 5 531.8164672851562 2 531.815336 1061.61612 NaN NaN NaN NaN NaN NaN NaN 80.792 1 84.354 83.854 84.854 3.5624 0 0 0 0.381 1 19255 19255 5.2307 0.47466 1 + 47320 24773 29859 29873 54655 54655 0.08777576147872423 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 404.5887145996094 3 404.588536 1210.74378 0.042844 1.7334E-05 1.1729 0.00047455 1.2158 0.00049188 404.58892789380576 43.457 0.16573 43.457 43.401 43.567 0 23 14 2 0 0 0 0.56296 1 8698 8698 1.7423 1.1154 1 97450 + 47321 28780 29860 29874 54656 54656 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 404.92352294921875 3 404.588536 1210.74378 0.04151 1.6794E-05 1.0513 0.00042534 1.0928 0.00044213 404.5888793256245 43.762 0.099426 43.762 43.693 43.792 0 16 11 2 0 0 0 0.56337 1 8756 8756 1.4551 0 1 147830 + 47322 28780 29860 29874 54657 54657 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 404.5884704589844 3 404.588536 1210.74378 -0.44124 -0.00017852 1.1579 0.00046848 0.71667 0.00028996 404.5888682360958 38.224 0.42354 41.889 41.694 42.117 3.6652 52 32 2 0 0 0 0.56296 1 7368 7368 1.7423 0.14999 1 93285 + 47323 28780 29860 29874 54658 54658 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 404.5887145996094 3 404.588536 1210.74378 -1.1887 -0.00048095 1.9689 0.00079661 0.7802 0.00031566 404.5891626569151 37.509 0.28365 40.756 40.586 40.87 3.247 27 20 2 0 0 0 0.56454 1 7181 7181 0.62683 0.39098 1 36094 + 47324 28780 29860 29874 54659 54659 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 404.5888671875 3 404.588536 1210.74378 0.0082491 3.3375E-06 0.37447 0.00015151 0.38272 0.00015484 404.9232301842994 39.782 0.25861 43.438 43.272 43.531 3.6557 31 25 2 0 0 0 0.56296 1 6977 6977 1.7423 0.14999 1 124160 + 47325 28780 29860 29874 54660 54660 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 404.5890197753906 3 404.588536 1210.74378 0.003476 1.4064E-06 1.2384 0.00050105 1.2419 0.00050246 404.5890669703318 36.522 0.11717 40.189 40.091 40.208 3.6667 17 13 2 0 0 0 0.84575 1 6058 6058 0.62683 0.21856 1 88266 + 47326 28780 29860 29874 54661 54661 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 404.588536 1210.74378 -1.0021 -0.00040545 1.7602 0.00071215 0.75806 0.0003067 404.58919985017087 38.873 0.2635 42.251 42.062 42.325 3.3785 0.18289 0.00016886 NaN 1.7423 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 64989 + 47327 28780 29860 29874 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 404.588536 1210.74378 -1.0019 -0.00040535 1.6231 0.00065671 0.62126 0.00025135 404.58911429610095 37.215 0.58185 40.614 40.389 40.97 3.3988 -0.071143 -8.334E-05 NaN 0.62683 60 42 2 NaN NaN NaN NaN 0 NaN NaN 0 62394 + 47328 28780 29860 29874 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 404.588536 1210.74378 -1.0018 -0.00040534 1.6876 0.00068277 0.68571 0.00027743 404.58914934163585 36.826 0.65581 40.225 39.733 40.389 3.3988 -0.029348 -4.8211E-05 NaN 0.62683 67 49 2 NaN NaN NaN NaN 0 NaN NaN 0 98082 + 47329 28780 29860 29874 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 404.588536 1210.74378 -1.1293 -0.0004569 2.147 0.00086863 1.0176 0.00041173 404.92392581743695 40.565 0.07439 43.803 43.759 43.833 3.2372 0.020219 0.00082984 NaN 1.4551 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 63894 + 47330 28780 29860 29874 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 404.588536 1210.74378 -1.1947 -0.00048337 1.8493 0.00074821 0.65459 0.00026484 404.58917160796653 37.101 0.54237 40.348 40.083 40.625 3.247 0.094388 0.00014811 NaN 0.62683 63 42 2 NaN NaN NaN NaN 0 NaN NaN 0 85842 + 47331 28780 29860 29874 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 404.588536 1210.74378 -0.11128 -4.5022E-05 1.2512 0.0005062 1.1399 0.00046118 404.92336524531635 38.568 0.04747 42.073 42.032 42.08 3.5048 0.004868 -0.000449 NaN 1.7423 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 44415 + 47332 28780 29860 29874 0.14683716741956232 VFPKLPLRIE 10 Unmodified _VFPKLPLRIE_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|45|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 404.588536 1210.74378 0.04177 1.6899E-05 1.0586 0.00042828 1.1003 0.00044518 404.588856826873 38.337 0.13333 42.053 41.98 42.113 3.7164 -0.015136 -0.00068276 NaN 1.7423 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 54396 + 47333 28780 29860 29874 0.14683716741956232 VFPLIFLAKK 10 Unmodified _VFPLIFLAKK_ 0 0 0 REV__ENSG00000051341|ENST00000264233|POLQ REV__ENSG00000051341|ENST00000264233|POLQ MSMS UPN48_class_I_Rep_3 7 588.3828125 2 588.381177 1174.7478 NaN NaN NaN NaN NaN NaN NaN 111.34 1 115.01 114.51 115.51 3.6654 0 0 0 0.53105 1 26422 26422 0.45834 0.057624 1 + 47334 17680 29861 29875 54662 54662 0.16741806235631884 VFPLLEAFG 9 Unmodified _VFPLLEAFG_ 0 0 0 REV__L1MEf_dup7608|chr10:87136891-87137842:+|1.9008974255552136|0.0731198095931648|4.7|151.0|45|2|anti-sense REV__L1MEf_dup7608|chr10:87136891-87137842:+|1.9008974255552136|0.0731198095931648|4.7|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_2 3 496.76593017578125 2 496.776211 991.537869 NaN NaN NaN NaN NaN NaN NaN 55.674 1 58.985 58.485 59.485 3.3102 0 0 0 0.34056 1 12685 12685 8.5933 2.8329 1 + 47335 28686 29862 29876 54663 54663 0.04176143562665402 VFPLVYFF 8 Unmodified _VFPLVYFF_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.2999877929688 2 516.283672 1030.55279 NaN NaN NaN NaN NaN NaN NaN 59.145 1 62.643 62.143 63.143 3.4987 0 0 0 0.4032 1 12947 12947 6.3541 0 1 + 47336 24495 29863 29877 54664 54664 0.03873635430659306 VFPLVYFF 8 Unmodified _VFPLVYFF_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense MSMS UPN48_class_I_Rep_3 7 516.2986450195312 2 516.283672 1030.55279 NaN NaN NaN NaN NaN NaN NaN 58.921 1 62.444 61.944 62.944 3.5231 0 0 0 0.4032 1 12813 12813 6.3541 0 1 + 47337 24495 29863 29877 54665 54665 0.03873635430659306 VFPLVYFF 8 Unmodified _VFPLVYFF_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|87|1|anti-sense MSMS UPN48_class_I_Rep_3 7 516.29931640625 2 516.283672 1030.55279 NaN NaN NaN NaN NaN NaN NaN 59.173 1 62.696 62.196 63.196 3.5231 0 0 0 0.39167 1 12892 12892 11.114 0 1 + 47338 24495 29863 29877 54666 54666 0.03873635430659306 VFPMPILP 8 Unmodified _VFPMPILP_ 0 0 0 MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 457.2638854980469 2 457.264425 912.514297 -0.12312 -5.6301E-05 0.10242 4.6834E-05 -0.020702 -9.4662E-06 457.2643465100743 85.882 0.80251 89.254 88.924 89.726 3.3716 165 94 2 0 0 0 0.82752 1 21459 21459 0.79363 0 1 360090 47339 16322 29864 29878 54667 54667 0.05454006524507804 VFPMPILP 8 Unmodified _VFPMPILP_ 0 0 0 MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 457.264425 912.514297 0.20491 9.3697E-05 -0.2162 -9.8862E-05 -0.011296 -5.1652E-06 457.26421753462 89.166 0.13188 89.166 89.125 89.257 0 -0.052827 -3.9642E-05 NaN 0.79363 42 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1211300 47340 16322 29864 29878 0.05454006524507804 VFPMPILP 8 Unmodified _VFPMPILP_ 0 0 0 MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 457.264425 912.514297 -0.12312 -5.6301E-05 0.10242 4.6834E-05 -0.020702 -9.4662E-06 457.2643465100743 85.882 0.80251 89.254 88.924 89.726 3.3716 0.034634 0.00025175 NaN 0.79363 165 94 2 NaN NaN NaN NaN 0 NaN NaN 0 360090 47341 16322 29864 29878 0.05454006524507804 VFPMPILP 8 Unmodified _VFPMPILP_ 0 0 0 MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 457.264425 912.514297 0.1694 7.746E-05 -0.20839 -9.529E-05 -0.038993 -1.783E-05 457.26419019360185 85.506 0.74641 89.212 88.863 89.609 3.7058 -0.0073974 -3.2498E-05 NaN 0.79363 216 88 3 NaN NaN NaN NaN 0 NaN NaN 0 673690 47342 16322 29864 29878 0.05454006524507804 VFPMPILP 8 Unmodified _VFPMPILP_ 0 0 0 MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MLT1C-int_dup5|chr1:41216984-41218234:+|1.1887186682602957|0.0131480555020084|6.5|149.0|25|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 457.264425 912.514297 0.20256 9.2625E-05 -0.27601 -0.00012621 -0.073449 -3.3586E-05 457.2641656429772 85.496 0.71507 89.245 88.899 89.614 3.7494 0.025591 -9.4338E-05 NaN 0.79363 211 87 3 NaN NaN NaN NaN 0 NaN NaN 0 626840 47343 16322 29864 29878 0.05454006524507804 VFPPIHRLT 9 Unmodified _VFPPIHRLT_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|94|1|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|94|1|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|94|1|anti-sense MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 41.454 1 41.454 40.954 41.954 0 0 0 0 0.39518 1 8129 8129 1.8442 0 1 47344 12675 29865 29879 54668 54668 0.09258032330785682 VFPPPVKGAF 10 Unmodified _VFPPPVKGAF_ 0 0 0 REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|69|3|anti-sense REV__PRIMA4-int_dup288|chr12:31305999-31307097:-|2.731782326793075|0.0752907462108364|5.18|151.0|69|3|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8052368164062 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 33.912 1 37.591 37.091 38.091 3.6797 0 0 0 0.53105 1 5332 5332 3.9444 0 1 + 47345 32164 29866 29880 54669 54669 0.06955825207955968 VFPPTPRR 8 Unmodified _VFPPTPRR_ 0 0 0 ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 MSMS UPN48_class_I_Rep_1 5 485.2856750488281 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 52.468 1 55.991 55.491 56.491 3.5227 0 0 0 0.40643 1 10913 10913 2.0598 1.2661 1 47346 717 29867 29881 54670 54670 0.07004903608185487 VFPQNNGTF 9 Unmodified _VFPQNNGTF_ 0 0 0 L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|82|1|anti-sense L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|82|1|anti-sense L1M5_dup12338|chr3:197121871-197123876:+|1.957777889663356|0.0493260758001641|5.31|150.0|82|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 512.250244140625 2 512.248349 1022.48214 0.32077 0.00016432 1.7562 0.00089959 2.0769 0.0010639 512.2494675382617 80.606 0.16726 84.25 84.176 84.344 3.6446 31 23 2 0 0 0 0.090251 1 19126 19126 36.127 4.0101 1 273800 47347 9094 29868 29882 54671 54671 -0.02819689624948296 VFPRSLKEL 9 Unmodified _VFPRSLKEL_ 0 0 0 nc|ENSG00000008869|Q9P2D3-2|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B MULTI-MSMS UPN48_class_I_Rep_3 7 545.832275390625 2 544.826766 1087.63898 0.49829 0.00027148 -1.1651 -0.00063476 -0.66678 -0.00036328 544.8245425880338 89.456 0.61079 93.285 92.889 93.5 3.8293 135 74 3 0 0 0 0.49026 1 21186 21186 1.6526 0 1 144180 47348 744 29869 29883 54672 54672 0.09866595265384603 VFPVFLEH 8 Unmodified _VFPVFLEH_ 0 0 0 MER41-int_dup542|chr6:15556909-15558273:+|1.399843637465695|0.0380021109818504|5.2|151.0|91|3|anti-sense MER41-int_dup542|chr6:15556909-15558273:+|1.399843637465695|0.0380021109818504|5.2|151.0|91|3|anti-sense MER41-int_dup542|chr6:15556909-15558273:+|1.399843637465695|0.0380021109818504|5.2|151.0|91|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.2693176269531 2 494.268553 986.522553 NaN NaN NaN NaN NaN NaN NaN 59.386 1 62.909 62.409 63.409 3.5231 0 0 0 0.40738 1 12956 12956 0.79363 0 1 47349 15965 29870 29884 54673 54673 0.028752767654737 VFPVFSSGSF 10 Unmodified _VFPVFSSGSF_ 0 0 0 L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.2689819335938 2 537.26875 1072.52295 0.35544 0.00019097 0.10559 5.673E-05 0.46103 0.0002477 537.2687589153923 50.126 2.0644 53.651 52.902 54.966 3.5246 423 132 5 0 0 0 0.27684 2 10289 10289;10327 36.127 1.195 1 5351400 47350 9711 29871 29885 54674;54675 54674 -0.010413483053298478 VFPVFSSGSF 10 Unmodified _VFPVFSSGSF_ 0 0 0 L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.2689819335938 2 537.26875 1072.52295 0.41791 0.00022453 0.054342 2.9196E-05 0.47225 0.00025373 537.268732963649 50.007 1.9182 53.702 52.927 54.846 3.6946 405 121 5 0 0 0 0.27684 2 10261 10261;10298 36.127 1.8583 1 5463200 47351 9711 29871 29885 54676;54677 54676 -0.010413483053298478 VFPVFSSGSF 10 Unmodified _VFPVFSSGSF_ 0 0 0 L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense L1MA4_dup6624|chr10:5699823-5702625:-|3.043887685820465|0.1400255564532907|4.44|151.0|99|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.2689208984375 2 537.26875 1072.52295 0.46297 0.00024874 0.0004313 2.3173E-07 0.46341 0.00024897 537.2687016818568 50.128 2.1077 53.749 52.964 55.072 3.621 421 137 5 0 0 0 0.27684 3 10220 10220;10261;10301 36.127 2.2827 1 5351500 47352 9711 29871 29885 54678;54679;54680 54678 -0.010413483053298478 VFPVPVPF 8 Unmodified _VFPVPVPF_ 0 0 0 REV__HERVE-int_dup223|chr13:45383317-45383907:-|1.1332804526142517|0.2709453993806617|2.06|150.0|27|2|anti-sense REV__HERVE-int_dup223|chr13:45383317-45383907:-|1.1332804526142517|0.2709453993806617|2.06|150.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 451.2625732421875 2 451.262739 900.510926 NaN NaN NaN NaN NaN NaN NaN 115.77 1 119.42 118.92 119.92 3.6433 0 0 0 0.40738 1 27555 27555 0.79363 0 1 + 47353 23643 29872 29886 54681 54681 0.05669079742142458 VFQLGVIY 8 Unmodified _VFQLGVIY_ 0 0 0 REV__L1M5_dup40529|chr12:118323097-118323483:+|1.782214483239663|0.0044066625309239|8.66|151.0|28|3|anti-sense REV__L1M5_dup40529|chr12:118323097-118323483:+|1.782214483239663|0.0044066625309239|8.66|151.0|28|3|anti-sense MSMS UPN48_class_I_Rep_3 7 469.7711181640625 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 50.408 1 54.029 53.529 54.529 3.621 0 0 0 0.39408 1 10224 10224 10.183 0.83596 1 + 47354 24669 29873 29887 54682 54682 0.05604160908239919 VFQRKPKL 8 Unmodified _VFQRKPKL_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|153|2|anti-sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|153|2|anti-sense MSMS UPN47_class_I_Rep_2 3 508.3100891113281 2 508.324194 1014.63383 NaN NaN NaN NaN NaN NaN NaN 73.189 1 76.486 75.986 76.986 3.2971 0 0 0 0.40746 1 17982 17982 0.69038 0 1 + 47355 31484 29874 29888 54683 54683 0.1271033619342461 VFRCQYIM 8 Unmodified _VFRCQYIM_ 0 0 0 REV__L1MC1_dup8706|chr10:68048220-68048837:+|1.3604548845593167|0.0205686928846919|6.05|151.0|6|1|sense REV__L1MC1_dup8706|chr10:68048220-68048837:+|1.3604548845593167|0.0205686928846919|6.05|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 530.2609252929688 2 530.259348 1058.50414 NaN NaN NaN NaN NaN NaN NaN 51.806 1 55.445 54.945 55.945 3.639 0 0 0 0.39408 1 10710 10710 10.183 0.83596 1 + 47356 26612 29875 29889 54684 54684 -0.022769244724031523 VFRFLFLY 8 Unmodified _VFRFLFLY_ 0 0 0 L1PA15_dup2985|chr6:37948454-37949320:-|2.511429131804846|0.0132781430969019|7.56|151.0|32|1|anti-sense L1PA15_dup2985|chr6:37948454-37949320:-|2.511429131804846|0.0132781430969019|7.56|151.0|32|1|anti-sense L1PA15_dup2985|chr6:37948454-37949320:-|2.511429131804846|0.0132781430969019|7.56|151.0|32|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 552.81298828125 2 552.81567 1103.61679 0.37658 0.00020818 -2.1108 -0.0011669 -1.7343 -0.00095872 553.317136621893 45.862 0.055248 45.862 45.829 45.885 0 6 4 2 0 0 0 0.82752 1 9362 9362 6.3541 0 1 119330 47357 13918 29876 29890 54685 54685 0.06912415587612486 VFRFLFLY 8 Unmodified _VFRFLFLY_ 0 0 0 L1PA15_dup2985|chr6:37948454-37949320:-|2.511429131804846|0.0132781430969019|7.56|151.0|32|1|anti-sense L1PA15_dup2985|chr6:37948454-37949320:-|2.511429131804846|0.0132781430969019|7.56|151.0|32|1|anti-sense L1PA15_dup2985|chr6:37948454-37949320:-|2.511429131804846|0.0132781430969019|7.56|151.0|32|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 552.81567 1103.61679 0.37658 0.00020818 -2.1108 -0.0011669 -1.7343 -0.00095872 553.317136621893 45.862 0.055248 45.862 45.829 45.885 0 0 0 NaN 6.3541 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 119330 47358 13918 29876 29890 0.06912415587612486 VFRFYIFFLIR 11 Unmodified _VFRFYIFFLIR_ 0 0 0 L1MB7_dup16741|chr13:49029725-49031104:+|1.9235149083660008|0.0810325097974978|4.57|151.0|63|1|anti-sense L1MB7_dup16741|chr13:49029725-49031104:+|1.9235149083660008|0.0810325097974978|4.57|151.0|63|1|anti-sense L1MB7_dup16741|chr13:49029725-49031104:+|1.9235149083660008|0.0810325097974978|4.57|151.0|63|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 508.2104797363281 3 507.630735 1519.87038 0.28257 0.00014344 0.26181 0.0001329 0.54438 0.00027635 507.63088983546226 40.269 0.052311 40.269 40.238 40.29 0 8 6 2 0 0 0 22.551 1 7801 7801 0.50596 0 1 80098 47359 10733 29877 29891 54686 54686 0.13123642967093474 VFRGRYVQ 8 Unmodified _VFRGRYVQ_ 0 0 0 L1PA16_dup13508|chr20:41062939-41064313:-|1.0829572964669|0.0480393698848658|4.49|150.0|46|1|anti-sense L1PA16_dup13508|chr20:41062939-41064313:-|1.0829572964669|0.0480393698848658|4.49|150.0|46|1|anti-sense L1PA16_dup13508|chr20:41062939-41064313:-|1.0829572964669|0.0480393698848658|4.49|150.0|46|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2880859375 2 512.787976 1023.5614 0.26296 0.00013484 -2.5993 -0.0013329 -2.3364 -0.0011981 512.786971464914 65.211 0.09523 68.391 68.341 68.436 3.1795 11 7 2 0 0 0 0.82752 1 15650 15650 2.5775 0.51773 1 58077 47360 14052 29878 29892 54687 54687 0.05056002119840741 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.3037719726562 3 556.613856 1666.81974 0.19205 0.0001069 -0.010604 -5.9024E-06 0.18144 0.00010099 556.9480401973998 31.35 0.14378 31.35 31.271 31.415 0 12 10 2 0 0 0 0.68491 1 5228 5228 0.08335 0.08335 1 44518 47361 10256 29879 29893 54688 54688 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.6142578125 3 556.613856 1666.81974 0.20625 0.0001148 0.4439 0.00024708 0.65015 0.00036188 556.6140758370663 31.905 0.95046 31.905 31.543 32.493 0 96 68 2 0 0 0 0.68081 5 5350 5350;5362;5416;5457;5547 0.45452 0.45452 1 111850 47362 10256 29879 29893 54689;54690;54691;54692;54693 54689 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.6143798828125 3 556.613856 1666.81974 0.33033 0.00018387 1.3538 0.00075355 1.6841 0.00093742 556.6143646933166 37.586 0.12141 37.586 37.54 37.661 0 13 9 2 0 0 0 0.68491 1 7093 7093 0.08335 0.08335 1 131510 47363 10256 29879 29893 54694 54694 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.6148071289062 3 556.613856 1666.81974 0.40687 0.00022647 0.62144 0.0003459 1.0283 0.00057237 556.6143434428365 42.554 0.068825 42.554 42.515 42.584 0 10 6 2 0 0 0 0.68491 1 8429 8429 0.08335 0.08335 1 83099 47364 10256 29879 29893 54695 54695 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MSMS UPN46_class_I_Rep_3 1 556.6141967773438 3 556.613856 1666.81974 NaN NaN NaN NaN NaN NaN NaN 31.563 1 31.563 31.063 32.063 0 0 0 0 0.38417 1 5290 5290 0.094841 0.094841 1 47365 10256 29879 29893 54696 54696 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MSMS UPN46_class_I_Rep_3 1 556.6141357421875 3 556.613856 1666.81974 NaN NaN NaN NaN NaN NaN NaN 35.793 1 35.793 35.293 36.293 0 0 0 0 0.38417 1 6560 6560 0.094841 0.094841 1 47366 10256 29879 29893 54697 54697 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MSMS UPN46_class_I_Rep_3 1 556.6141357421875 3 556.613856 1666.81974 NaN NaN NaN NaN NaN NaN NaN 36.831 1 36.831 36.331 37.331 0 0 0 0 0.38417 1 6870 6870 0.08335 0.08335 1 47367 10256 29879 29893 54698 54698 0.013001136420825787 VFRHYFFRYFW 11 Unmodified _VFRHYFFRYFW_ 0 0 0 L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|127|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 556.6141967773438 3 556.613856 1666.81974 0.20625 0.0001148 0.4439 0.00024708 0.65015 0.00036188 556.6140758370663 31.905 0.95046 31.905 31.543 32.493 0 96 68 2 0 0 0 22.551 1 5290 5290 0.094841 0.094841 1 111850 47368 10256 29879 29893 54699 54699 0.013001136420825787 VFRILLPYFA 10 Unmodified _VFRILLPYFA_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MSMS UPN48_class_I_Rep_1 5 619.8689575195312 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 88.233 1 91.856 91.356 92.356 3.6229 0 0 0 0.53105 1 21167 21167 0.45834 0 1 + 47369 21135 29880 29894 54700 54700 0.1129633171324258 VFRIRCMK 8 Unmodified _VFRIRCMK_ 0 0 0 nc|ENSG00000134352|P40189-2|IL6ST;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST nc|ENSG00000134352|P40189-2|IL6ST nc|ENSG00000134352|P40189-2|IL6ST MSMS UPN47_class_I_Rep_3 4 526.82080078125 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 16.505 1 19.867 19.367 20.367 3.3619 0 0 0 0.40798 1 1040 1040 0 0 1 47370 2846 29881 29895 54701 54701 0.054584634098091556 VFRIVPKFK 9 Unmodified _VFRIVPKFK_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MULTI-MSMS UPN47_class_I_Rep_3 4 567.3641967773438 2 567.363319 1132.71209 0.33874 0.00019219 1.2519 0.00071028 1.5906 0.00090247 567.3639695052917 47.234 0.28485 50.478 50.358 50.642 3.2439 26 17 2 0 0 0 0.50582 1 10182 10182 0 0 1 164100 47371 1624 29882 29896 54702 54702 0.15103768778658377 VFRIVPKFK 9 Unmodified _VFRIVPKFK_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MSMS UPN47_class_I_Rep_3 4 567.3638916015625 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 49.546 1 52.772 52.272 53.272 3.2262 0 0 0 0.4029 1 10868 10868 0 0 1 47372 1624 29882 29896 54703 54703 0.15103768778658377 VFRIVPKFK 9 Unmodified _VFRIVPKFK_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MSMS UPN48_class_I_Rep_1 5 567.3643798828125 2 567.363319 1132.71209 NaN NaN NaN NaN NaN NaN NaN 46.54 1 50.059 49.559 50.559 3.5192 0 0 0 0.4029 1 9098 9098 0 0 1 47373 1624 29882 29896 54704 54704 0.15103768778658377 VFRKRGVF 8 Unmodified _VFRKRGVF_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MULTI-MSMS UPN48_class_I_Rep_1 5 504.8088073730469 2 504.808711 1007.60287 0.20686 0.00010442 -0.076283 -3.8509E-05 0.13057 6.5915E-05 504.8086335766464 109.59 0.53168 113.22 113.2 113.73 3.6321 165 73 3 0 0 0 0.82752 1 26623 26623 5.2307 0 1 1772200 47374 5724 29883 29897 54705 54705 0.09937182879184547 VFRKRHCL 8 Unmodified _VFRKRHCL_ 0 0 0 REV__nc|ENSG00000169783|Q96FE5-2|LINGO1 REV__nc|ENSG00000169783|Q96FE5-2|LINGO1 MSMS UPN48_class_I_Rep_1 5 529.7275390625 2 529.805645 1057.59674 NaN NaN NaN NaN NaN NaN NaN 27.518 1 31.081 30.581 31.581 3.5629 0 0 0 0.40738 1 3554 3554 0.79363 0 1 + 47375 20326 29884 29898 54706 54706 0.07024341375995391 VFRLGSRP 8 Unmodified _VFRLGSRP_ 0 0 0 Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 466.2772216796875 2 466.277244 930.539935 NaN NaN NaN NaN NaN NaN NaN 108.35 1 108.35 107.85 108.85 0 0 0 0 0.40157 1 26489 26489 7.2892 0 1 47376 33439 29885 29899 54707 54707 0.07188617091151173 VFRLGSRP 8 Unmodified _VFRLGSRP_ 0 0 0 Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 466.2772216796875 2 466.277244 930.539935 0.21574 0.0001006 0.10802 5.0369E-05 0.32377 0.00015097 466.2771999482449 107.79 0.26982 111.46 111.39 111.66 3.6724 52 17 4 0 0 0 0.82752 1 26413 26413 4.756 0 1 73289000 47377 33439 29885 29899 54708 54708 0.07188617091151173 VFRLGSRP 8 Unmodified _VFRLGSRP_ 0 0 0 Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense Tigger4b_dup2156|chr16:29442250-29442588:-|2.070667391630328|0.4872832370944458|2.09|151.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 466.2772216796875 2 466.277244 930.539935 0.06444 3.0047E-05 0.052293 2.4383E-05 0.11673 5.443E-05 466.2771796416764 110.51 0.10517 114.14 114.12 114.22 3.6326 16 9 3 0 0 0 0.82752 1 26827 26827 7.2892 0 1 1800700 47378 33439 29885 29899 54709 54709 0.07188617091151173 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS UPN48_class_I_Rep_1 5 601.305908203125 2 600.806031 1199.59751 0.4565 0.00027427 0.16445 9.8801E-05 0.62095 0.00037307 600.8059691045665 72.861 0.36868 76.334 76.128 76.497 3.4732 37 25 2 0 0 0 0.279 3 17120 17100;17120;17166 15.248 12.671 1 107910 47379 1104 29886 29900 54710;54711;54712 54711 0.005694145060488154 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MSMS UPN48_class_I_Rep_1 5 600.8050537109375 2 600.806031 1199.59751 NaN NaN NaN NaN NaN NaN NaN 73.052 1 76.533 76.033 77.033 3.4812 0 0 0 0.37891 1 17189 17189 5.7319 1.5423 1 47380 1104 29886 29900 54713 54713 0.005694145060488154 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MSMS UPN48_class_I_Rep_1 5 600.8054809570312 2 600.806031 1199.59751 NaN NaN NaN NaN NaN NaN NaN 73.081 1 76.563 76.063 77.063 3.4812 0 0 0 0.38639 1 17198 17198 3.9444 1.6417 1 47381 1104 29886 29900 54714 54714 0.005694145060488154 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS UPN48_class_I_Rep_2 6 600.806396484375 2 600.806031 1199.59751 0.47872 0.00028762 -0.29045 -0.0001745 0.18828 0.00011312 600.8060007233653 72.719 0.45299 76.283 76.071 76.524 3.5645 47 37 2 0 0 0 0.16799 5 16991 16991;17025;17028;17049;17089 23.79 18.559 1 97086 47382 1104 29886 29900 54715;54716;54717;54718;54719 54715 0.005694145060488154 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS UPN48_class_I_Rep_3 7 600.8055419921875 2 600.806031 1199.59751 0.5903 0.00035466 -0.0025727 -1.5457E-06 0.58773 0.00035311 600.8060255453058 72.708 0.47488 76.245 76.04 76.515 3.5373 52 37 2 0 0 0 0.13455 5 16966 16929;16966;16971;17010;17046 27.223 23.79 1 151040 47383 1104 29886 29900 54720;54721;54722;54723;54724 54721 0.005694145060488154 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 600.806031 1199.59751 0.59094 0.00035504 -0.025833 -1.5521E-05 0.56511 0.00033952 600.8060542738325 72.502 0.14423 76.039 75.925 76.069 3.5373 -0.17963 3.0076E-05 NaN 23.79 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 74021 47384 1104 29886 29900 0.005694145060488154 VFRNKRRIMRI 11 Unmodified _VFRNKRRIMRI_ 0 0 0 ENST00000498447.5_1_8:42403781-42407748:+|nuORF ENST00000498447.5_1_8:42403781-42407748:+|nuORF ENST00000498447.5_1_8:42403781-42407748:+|nuORF MSMS UPN47_class_I_Rep_1 2 496.9737548828125 3 496.97339 1487.89834 NaN NaN NaN NaN NaN NaN NaN 106.69 1 110.4 109.9 110.9 3.7088 0 0 0 0.38417 1 26149 26149 0.50596 0 1 47385 7120 29887 29901 54725 54725 0.17390642675513845 VFRNKRRIMRI 11 Unmodified _VFRNKRRIMRI_ 0 0 0 ENST00000498447.5_1_8:42403781-42407748:+|nuORF ENST00000498447.5_1_8:42403781-42407748:+|nuORF ENST00000498447.5_1_8:42403781-42407748:+|nuORF MSMS UPN47_class_I_Rep_1 2 496.9748229980469 3 496.97339 1487.89834 NaN NaN NaN NaN NaN NaN NaN 107.19 1 110.86 110.36 111.36 3.6724 0 0 0 0.38417 1 26258 26258 1.4551 0.75745 1 47386 7120 29887 29901 54726 54726 0.17390642675513845 VFRVNDIKL 9 Unmodified _VFRVNDIKL_ 0 0 0 REV__ENSG00000103148|ENST00000611875|NPRL3 REV__ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS UPN48_class_I_Rep_2 6 552.3324584960938 2 552.332216 1102.64988 0.45581 0.00025176 0.60442 0.00033384 1.0602 0.0005856 552.3321799707367 50.079 0.84282 53.773 53.463 54.306 3.6946 91 55 3 0 0 0 0.24936 1 10158 10158 17.113 1.8644 1 396210 + 47387 18216 29888 29902 54727 54727 0.10265997639658053 VFRVNDIKL 9 Unmodified _VFRVNDIKL_ 0 0 0 REV__ENSG00000103148|ENST00000611875|NPRL3 REV__ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS UPN48_class_I_Rep_3 7 552.3321533203125 2 552.332216 1102.64988 0.28126 0.00015535 0.78783 0.00043514 1.0691 0.00059049 552.3322235081686 50.282 0.9868 53.903 53.358 54.345 3.621 111 61 3 0 0 0 0.17897 1 10209 10209 22.736 2.3217 1 440720 + 47388 18216 29888 29902 54728 54728 0.10265997639658053 VFRVNDIKL 9 Unmodified _VFRVNDIKL_ 0 0 0 REV__ENSG00000103148|ENST00000611875|NPRL3 REV__ENSG00000103148|ENST00000611875|NPRL3 MULTI-SECPEP UPN48_class_I_Rep_3 7 552.8234252929688 2 552.332216 1102.64988 0.28126 0.00015535 0.78783 0.00043514 1.0691 0.00059049 552.3322235081686 50.282 0.9868 53.903 53.358 54.345 3.621 111 61 3 0 0 0 0.11021 1 10112 10112 14.838 3.198 1 440720 + 47389 18216 29888 29902 54729 54729 0.10265997639658053 VFRWAFFW 8 Unmodified _VFRWAFFW_ 0 0 0 REV__ENSG00000137819|ENST00000395407|PAQR5 REV__ENSG00000137819|ENST00000395407|PAQR5 MSMS UPN48_class_I_Rep_1 5 579.7971801757812 2 579.797812 1157.58107 NaN NaN NaN NaN NaN NaN NaN 26.502 1 30.069 29.569 30.569 3.5667 0 0 0 0.40738 1 3264 3264 0.79363 0.10326 1 + 47390 19247 29889 29903 54730 54730 0.0085837813062426 VFRWPLGV 8 Unmodified _VFRWPLGV_ 0 0 0 MER51A_dup541|chrX:123989984-123990516:-|1.1236514453960715|0.0078224266446124|7.17|151.0|19|1|anti-sense MER51A_dup541|chrX:123989984-123990516:-|1.1236514453960715|0.0078224266446124|7.17|151.0|19|1|anti-sense MER51A_dup541|chrX:123989984-123990516:-|1.1236514453960715|0.0078224266446124|7.17|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 487.2947692871094 2 487.284537 972.554522 NaN NaN NaN NaN NaN NaN NaN 94.703 1 98.454 97.954 98.954 3.7508 0 0 0 0.40581 1 23520 23520 2.8892 0 1 47391 16083 29890 29904 54731 54731 0.06714689239288418 VFSFFLVY 8 Unmodified _VFSFFLVY_ 0 0 0 L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|242|1|anti-sense L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|242|1|anti-sense L1PREC2_dup1788|chr4:53240879-53247049:+|5.715857217973628|0.0811889953605997|6.14|151.0|242|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.2769165039062 2 511.273304 1020.53206 0.048326 2.4708E-05 -0.051544 -2.6353E-05 -0.0032182 -1.6454E-06 511.2726877894288 48.416 1.4555 51.763 51.342 52.797 3.3467 181 84 4 0 0 0 0.82752 1 10582 10582 6.3541 0 1 347710 47392 15430 29891 29905 54732 54732 0.0226104505100011 VFSICHSKVD 10 Unmodified _VFSICHSKVD_ 0 0 0 ENSG00000198788|ENST00000675028|MUC2;nc|ENSG00000198788|Q02817|MUC2 ENSG00000198788|ENST00000675028|MUC2 ENSG00000198788|ENST00000675028|MUC2 MSMS UPN47_class_I_Rep_3 4 567.78173828125 2 567.784241 1133.55393 NaN NaN NaN NaN NaN NaN NaN 37.549 1 40.796 40.296 41.296 3.247 0 0 0 0.53105 1 7213 7213 3.5965 1.2938 1 47393 5461 29892 29906 54733 54733 -0.0075051826272556355 VFSLNFSF 8 Unmodified _VFSLNFSF_ 0 0 0 L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|223|1|anti-sense L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|223|1|anti-sense L1PA7_dup10531|chr12:79861342-79867483:+|4.178962860354026|0.1373713837138277|4.93|151.0|223|1|anti-sense MSMS UPN48_class_I_Rep_3 7 480.7451477050781 2 480.744911 959.475269 NaN NaN NaN NaN NaN NaN NaN 59.262 1 62.785 62.285 63.285 3.5231 0 0 0 0.40404 1 12919 12919 5.2307 0 1 47394 14705 29893 29907 54734 54734 -0.006090025055073056 VFSRDIDE 8 Unmodified _VFSRDIDE_ 0 0 0 L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|61|1|sense L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|61|1|sense L1PA6_dup1631|chr4:106068152-106074249:-|2.307512708975868|0.3673561936718014|2.65|151.0|61|1|sense MSMS UPN48_class_I_Rep_1 5 490.7370910644531 2 490.737814 979.461075 NaN NaN NaN NaN NaN NaN NaN 111.46 1 115.09 114.59 115.59 3.6326 0 0 0 0.40625 1 27039 27039 2.3027 0 1 47395 14567 29894 29908 54735 54735 -0.029476997244614722 VFSRLRLLLLK 11 Unmodified _VFSRLRLLLLK_ 0 0 0 ENST00000585682.5_1_4:159047074-159047500:-|nuORF ENST00000585682.5_1_4:159047074-159047500:-|nuORF ENST00000585682.5_1_4:159047074-159047500:-|nuORF MSMS UPN48_class_I_Rep_2 6 453.30548095703125 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 116.9 1 120.56 120.06 121.06 3.6607 0 0 0 0.38417 1 28008 28008 0.094841 0 1 47396 7581 29895 29909 54736 54736 0.23275331858417303 VFSSIWTSF 9 Unmodified _VFSSIWTSF_ 0 0 0 REV__L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|71|2|anti-sense REV__L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 537.2689819335938 2 537.26875 1072.52295 0.35544 0.00019097 0.10559 5.673E-05 0.46103 0.0002477 537.2687589153923 50.126 2.0644 53.651 52.902 54.966 3.5246 423 132 5 0 0 0 0.074367 3 10132 10043;10091;10132 39.957 3.2239 1 5351400 + 47397 28040 29896 29910 54737;54738;54739 54739 -0.010413483053525852 VFSSIWTSF 9 Unmodified _VFSSIWTSF_ 0 0 0 REV__L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|71|2|anti-sense REV__L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 537.2689819335938 2 537.26875 1072.52295 0.41791 0.00022453 0.054342 2.9196E-05 0.47225 0.00025373 537.268732963649 50.007 1.9182 53.702 52.927 54.846 3.6946 405 121 5 0 0 0 0.074367 2 10024 10024;10064 39.957 3.8303 1 5463200 + 47398 28040 29896 29910 54740;54741 54740 -0.010413483053525852 VFSSIWTSF 9 Unmodified _VFSSIWTSF_ 0 0 0 REV__L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|71|2|anti-sense REV__L1ME3A_dup9310|chrX:154787867-154789132:+|1.893230001147713|0.4290734822400601|2.14|151.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 537.2689208984375 2 537.26875 1072.52295 0.46297 0.00024874 0.00043131 2.3173E-07 0.46341 0.00024897 537.2687016818568 50.128 2.1077 53.749 52.964 55.072 3.621 421 137 5 0 0 0 0.10817 1 10005 10005 32.305 3.2239 1 5351500 + 47399 28040 29896 29910 54742 54742 -0.010413483053525852 VFSSSLLLW 9 Unmodified _VFSSSLLLW_ 0 0 0 L1ME3G_dup16369|chr22:42379885-42380436:+|1.2722583421927356|0.4664267657306739|1.45|143.0|27|3|anti-sense L1ME3G_dup16369|chr22:42379885-42380436:+|1.2722583421927356|0.4664267657306739|1.45|143.0|27|3|anti-sense L1ME3G_dup16369|chr22:42379885-42380436:+|1.2722583421927356|0.4664267657306739|1.45|143.0|27|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 526.2929077148438 2 526.294768 1050.57498 0.3677 0.00019352 -1.1101 -0.00058424 -0.7424 -0.00039072 526.2931312689641 30.568 0.14268 34.11 34.01 34.152 3.542 18 13 2 0 0 0 0.48846 1 4409 4409 1.8442 0.19162 1 64136 47400 12832 29897 29911 54743 54743 0.051718151084287456 VFSTVVIHF 9 Unmodified _VFSTVVIHF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS UPN48_class_I_Rep_1 5 524.794677734375 2 524.794935 1047.57532 0.34135 0.00017914 -0.19359 -0.0001016 0.14776 7.7545E-05 524.7946781473657 68.862 0.84145 72.317 71.961 72.802 3.4548 150 66 3 0 0 0 0.006669 4 15978 15940;15978;16020;16062 139.54 57.68 1 624790 47401 2032 29898 29912 54744;54745;54746;54747 54745 0.05343234828274035 VFSTVVIHF 9 Unmodified _VFSTVVIHF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS UPN48_class_I_Rep_2 6 524.7949829101562 2 524.794935 1047.57532 0.39638 0.00020802 -0.22104 -0.000116 0.17534 9.2018E-05 524.7946811228211 68.675 0.872 72.184 71.863 72.735 3.5083 153 69 3 0 0 0 0.0058313 4 15944 15867;15905;15944;15981 109.63 31.645 1 601650 47402 2032 29898 29912 54748;54749;54750;54751 54750 0.05343234828274035 VFSTVVIHF 9 Unmodified _VFSTVVIHF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS UPN48_class_I_Rep_3 7 524.7948608398438 2 524.794935 1047.57532 0.49829 0.0002615 -0.36872 -0.0001935 0.12958 6.8001E-05 524.7946365055677 68.619 0.93362 72.128 71.757 72.69 3.5094 180 72 3 0 0 0 0.0069768 4 15763 15763;15801;15846;15890 117.6 35.735 1 723970 47403 2032 29898 29912 54752;54753;54754;54755 54752 0.05343234828274035 VFSVLVFY 8 Unmodified _VFSVLVFY_ 0 0 0 L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|78|3|anti-sense L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|78|3|anti-sense L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|78|3|anti-sense MSMS UPN47_class_I_Rep_1 2 487.27545166015625 2 487.273304 972.532055 NaN NaN NaN NaN NaN NaN NaN 110.87 1 114.45 113.95 114.95 3.5835 0 0 0 0.40738 1 27335 27335 0.79363 0 1 47404 11198 29899 29913 54756 54756 0.0446904505100747 VFSVLVFY 8 Unmodified _VFSVLVFY_ 0 0 0 L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|78|3|anti-sense L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|78|3|anti-sense L1MC1_dup8385|chr10:852062-853195:+|1.4585550539592442|0.0234152902750664|5.96|151.0|78|3|anti-sense MSMS UPN47_class_I_Rep_1 2 487.2751159667969 2 487.273304 972.532055 NaN NaN NaN NaN NaN NaN NaN 114.97 1 118.55 118.05 119.05 3.5809 0 0 0 0.40738 1 28429 28429 0.79363 0 1 47405 11198 29899 29913 54757 54757 0.0446904505100747 VFSWLDSSF 9 Unmodified _VFSWLDSSF_ 0 0 0 L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense;L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|37|1|anti-sense;L1MC2_dup2870|chr8:47534792-47537880:+|3.812021986168285|0.032698787306794|6.87|151.0|122|1|anti-sense;L1MC1_dup537|chr1:116524557-116525775:-|2.892132818133577|0.3431257061067765|3.08|151.0|44|1|anti-sense;L1MC1_dup6416|chr8:710490-711499:-|1.5845449506781664|0.2617213097864171|2.6|151.0|45|2|anti-sense;L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|52|3|anti-sense;L1MC1_dup9688|chr12:29193074-29193974:-|1.140538455333128|0.0133294312538792|6.42|149.0|47|2|anti-sense;L1MC1_dup12739|chr21:44148770-44150012:-|2.0870060713026297|0.1905980378868259|3.45|151.0|39|1|anti-sense;L1MC1_dup12593|chr21:5111960-5113202:+|3.70922651180212|0.4340006807902206|3.1|151.0|39|1|anti-sense;L1MC1_dup3129|chr3:196748162-196748785:-|2.8370513915133677|0.3587888524835612|2.98|151.0|34|2|anti-sense;L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|46|3|anti-sense;L1MC1_dup1225|chr2:32361353-32362313:-|5.125512289723243|0.0172147215160367|8.22|151.0|41|1|anti-sense;L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|29|1|anti-sense;L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|116|1|anti-sense L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 544.2583618164062 2 544.258382 1086.50221 0.44272 0.00024095 -0.361 -0.00019648 0.081713 4.4473E-05 544.2581917723974 49.994 0.90519 53.688 53.264 54.169 3.6946 89 58 2 0 0 0 0.12799 3 10142 10045;10142;10185 28.487 28.487 1 242050 47406 11102 29900 29914 54758;54759;54760 54759 -0.037579386849984076 VFSWLDSSF 9 Unmodified _VFSWLDSSF_ 0 0 0 L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense;L1MC1_dup11169|chr15:55260139-55261108:+|2.572206323402328|0.0356237209198231|6.17|151.0|37|1|anti-sense;L1MC2_dup2870|chr8:47534792-47537880:+|3.812021986168285|0.032698787306794|6.87|151.0|122|1|anti-sense;L1MC1_dup537|chr1:116524557-116525775:-|2.892132818133577|0.3431257061067765|3.08|151.0|44|1|anti-sense;L1MC1_dup6416|chr8:710490-711499:-|1.5845449506781664|0.2617213097864171|2.6|151.0|45|2|anti-sense;L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|52|3|anti-sense;L1MC1_dup9688|chr12:29193074-29193974:-|1.140538455333128|0.0133294312538792|6.42|149.0|47|2|anti-sense;L1MC1_dup12739|chr21:44148770-44150012:-|2.0870060713026297|0.1905980378868259|3.45|151.0|39|1|anti-sense;L1MC1_dup12593|chr21:5111960-5113202:+|3.70922651180212|0.4340006807902206|3.1|151.0|39|1|anti-sense;L1MC1_dup3129|chr3:196748162-196748785:-|2.8370513915133677|0.3587888524835612|2.98|151.0|34|2|anti-sense;L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|46|3|anti-sense;L1MC1_dup1225|chr2:32361353-32362313:-|5.125512289723243|0.0172147215160367|8.22|151.0|41|1|anti-sense;L1MC1_dup9222|chr11:68483782-68484574:-|2.988770291137912|0.0250032524136651|6.9|151.0|29|1|anti-sense;L1MC1_dup4747|chr5:143266814-143270139:-|1.8090314084033128|0.0386053869075662|5.55|151.0|116|1|anti-sense L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 544.2584228515625 2 544.258382 1086.50221 0.38797 0.00021116 -0.30651 -0.00016682 0.081461 4.4336E-05 544.2582371001723 50.175 1.0009 53.796 53.324 54.325 3.621 77 63 2 0 0 0 0.12799 5 10103 10022;10048;10103;10156;10200 28.487 28.487 1 291910 47407 11102 29900 29914 54761;54762;54763;54764;54765 54763 -0.037579386849984076 VFSYGKDPF 9 Unmodified _VFSYGKDPF_ 0 0 0 REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 530.2611083984375 2 530.260925 1058.5073 0.32906 0.00017449 0.10176 5.3957E-05 0.43082 0.00022845 530.2609086124265 51.135 1.4714 54.66 53.991 55.463 3.5246 331 111 4 0 0 0 0.40174 1 10727 10727 7.9102 0 1 3342600 + 47408 18589 29901 29915 54766 54766 -0.019616348223962632 VFTEIARLK 9 Unmodified _VFTEIARLK_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MSMS UPN48_class_I_Rep_1 5 538.8086547851562 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 51.049 1 54.574 54.074 55.074 3.5246 0 0 0 0.089203 1 10489 10489 26.884 12.045 1 47409 4233 29902 29916 54767 54767 0.1041859526535518 VFTFIFVF 8 Unmodified _VFTFIFVF_ 0 0 0 ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A MSMS UPN48_class_I_Rep_3 7 510.28546142578125 2 510.283672 1018.55279 NaN NaN NaN NaN NaN NaN NaN 104.63 1 108.35 107.85 108.85 3.7192 0 0 0 0.40364 1 24703 24703 5.7604 0 1 47410 5097 29903 29917 54768 54768 0.04425635430663988 VFTIWYVF 8 Unmodified _VFTIWYVF_ 0 0 0 L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|225|1|anti-sense;L1P3_dup2652|chr12:11256066-11261811:+|5.774046497810674|0.102807162033627|5.81|151.0|327|3|anti-sense;L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|345|3|anti-sense;L1PA7_dup730|chr1:207589321-207594612:+|3.2218802856408244|0.3675295701175049|3.13|151.0|200|1|anti-sense;L1PA7_dup496|chr1:160526325-160530345:-|1.5913865671590328|0.0426673478403798|5.22|151.0|169|2|anti-sense;L1PA7_dup5368|chr6:88827095-88833578:+|2.18995288410225|0.0386321943544875|5.82|151.0|233|1|anti-sense;L1PA7_dup581|chr1:174645251-174652319:-|1.1710310199896092|0.0243656492501952|5.59|150.0|258|1|anti-sense;L1PA7_dup6365|chr7:130632745-130639197:-|5.839654905969275|0.0793283655778867|6.2|151.0|292|2|anti-sense;L1PA7_dup6381|chr7:133964324-133970808:-|1.048406138261794|0.0638543556631064|4.04|150.0|227|1|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|194|1|anti-sense;L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|249|2|anti-sense;L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|363|3|anti-sense;L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|372|3|anti-sense;L1PA7_dup11725|chr15:44682791-44685327:+|1.31314901958336|0.0503762301388688|4.7|151.0|116|3|anti-sense;L1PA7_dup11755|chr15:49965827-49972283:+|5.965207144434409|0.0280773877075358|7.73|151.0|230|1|anti-sense;L1PA7_dup1254|chr2:99129770-99135377:-|1.1426404863493416|0.2891141190467196|1.98|151.0|276|2|anti-sense;L1PA7_dup11745|chr15:49005589-49007545:-|1.721788213162628|0.2225065777971876|2.95|151.0|59|1|anti-sense;L1PA7_dup2336|chr3:94077244-94081366:-|3.1086337561351067|0.2551357210433125|3.61|151.0|203|3|anti-sense;L1PA7_dup10432|chr12:65397611-65404068:-|9.111015752138362|0.1052954061541697|6.44|151.0|282|2|anti-sense;L1PA7_dup10415|chr12:62367491-62368962:-|2.2395689980859013|0.1219502533121194|4.2|151.0|81|2|anti-sense;L1PA7_dup2179|chr3:66288337-66293113:-|1.1065244987597704|0.0440752328290455|4.65|150.0|306|3|anti-sense;L1PA7_dup2141|chr3:56603135-56606744:-|1.6252444106393606|0.1962954386089137|3.05|150.0|111|1|anti-sense;L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|297|2|anti-sense;L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|223|1|anti-sense;L1PA7_dup4963|chr6:20592767-20597105:-|2.2343054575988672|0.1017072649623313|4.46|151.0|151|1|anti-sense;L1PA7_dup3101|chr4:53104887-53110041:+|2.5125540401400523|0.0411010925297604|5.93|151.0|231|2|anti-sense;L1PA7_dup2105|chr3:41925103-41931485:+|2.30110681533294|0.0613401516639413|5.23|151.0|259|2|anti-sense;L1PA7_dup1758|chr2:196752640-196758336:-|1.0635497154628375|0.0518502796574644|4.36|151.0|323|3|anti-sense;L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|131|1|anti-sense;L1PA7_dup6900|chr8:99410577-99416881:-|2.6216659767315704|0.0525132686208371|5.64|151.0|220|1|anti-sense;L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|146|1|anti-sense;L1PA7_dup9608|chr11:14795884-14800238:-|4.6172557570176815|0.1030060328596829|5.49|151.0|274|3|anti-sense;L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|325|3|anti-sense;L1P3_dup2623|chr11:108273631-108277835:-|1.967154664461814|0.0886873671034329|4.47|151.0|174|2|anti-sense;L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|136|2|anti-sense;L1PA5_dup10157|chr16:31278738-31284853:-|1.1068638513188322|0.037794633892038|4.87|150.0|290|2|anti-sense;L1PA7_dup12584|chr20:3522345-3528081:+|4.940146692166972|0.0510302459137463|6.6|151.0|275|2|anti-sense;L1PA7_dup7349|chr9:32508303-32514736:+|2.5793556744154595|0.3852009664111697|2.74|151.0|233|1|anti-sense;L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|198|2|anti-sense;L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|369|3|anti-sense;L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|317|3|anti-sense;L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|374|3|anti-sense;L1PA7_dup304|chr1:92530205-92535921:+|1.633741213489816|0.278375664478837|2.55|151.0|307|3|anti-sense;L1PA7_dup4126|chr5:37650965-37657453:-|3.129981979183475|0.0745572019981005|5.39|151.0|354|3|anti-sense;L1PA7_dup1458|chr2:148363533-148368483:+|3.261064220212944|0.1130751547087455|4.85|151.0|301|3|anti-sense;L1PA5_dup1583|chr2:222584378-222590526:+|3.6584738342194023|0.1855620678288153|4.3|150.0|360|3|anti-sense;L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|108|2|anti-sense;L1PA7_dup4391|chr5:93689804-93696192:+|2.070938411631657|0.1630476710510658|3.67|151.0|222|1|anti-sense;L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|124|2|anti-sense;L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|367|3|anti-sense;L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|118|1|anti-sense;L1PA7_dup11718|chr15:42301060-42304391:+|1.3344387139311995|0.0669808402247086|4.32|151.0|134|2|anti-sense;L1P3_dup2753|chr12:112155600-112159649:-|2.995373467987048|0.1372113213261341|4.45|151.0|177|2|anti-sense;L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|162|1|anti-sense;L1P2_dup1172|chr11:14863485-14865202:+|1.4406591513299587|0.3520000291172883|2.03|151.0|69|1|anti-sense;L1P2_dup383|chr4:53031027-53036029:+|1.1957446811097896|0.1701208011430608|2.81|151.0|300|3|anti-sense;L1P2_dup740|chr7:107377739-107381021:+|1.277877646282275|0.0273634383330684|5.55|151.0|154|2|anti-sense;L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|78|1|anti-sense;L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|227|3|anti-sense;L1PA6_dup4901|chr13:47907967-47914110:+|1.1775924301434912|0.0657619294126392|4.16|151.0|235|1|anti-sense;L1PA6_dup3707|chrX:80766638-80771565:+|1.6748875731716508|0.0528637176499735|4.99|150.0|171|1|anti-sense;L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|353|3|anti-sense;L1PA5_dup7113|chrX:110090710-110096813:-|3.300775715747009|0.0305743274911579|6.75|151.0|280|2|anti-sense;L1P3_dup2054|chrX:72437038-72440594:+|3.796873473798668|0.0583670315805057|6.02|151.0|112|1|anti-sense;L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|314|3|anti-sense;L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|232|1|anti-sense;L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|128|3|anti-sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|225|1|anti-sense;L1PA7_dup12015|chr16:72543205-72549689:+|1.006326178034013|0.0153200176296922|6.04|151.0|232|1|anti-sense;L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|128|3|anti-sense L1PA8_dup3234|chr6:118817123-118823554:-|3.619239290294372|0.2439976784873495|3.89|151.0|225|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 537.2688598632812 2 537.786579 1073.5586 0.42734 0.00022982 0.79116 0.00042547 1.2185 0.00065529 537.7876065517947 50.25 0.38503 53.945 53.756 54.141 3.6946 32 24 2 0 0 0 0.72333 1 10298 10298 17.087 0 1 94670 47411 13538;14743;14930 29904 29918 54769 54769 0.02476733942330611 VFTKSPYQEF 10 Unmodified _VFTKSPYQEF_ 0 0 0 ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2 ENST00000529806.5_1_16:2012098-2012518:-|nuORF ENST00000529806.5_1_16:2012098-2012518:-|nuORF MSMS UPN48_class_I_Rep_1 5 623.311279296875 2 623.311146 1244.60774 NaN NaN NaN NaN NaN NaN NaN 48.762 1 52.285 51.785 52.785 3.5239 0 0 0 0.53105 1 9782 9782 4.1895 1.691 1 47412 3198 29905 29919 54770 54770 -0.0047802255940041505 VFTKSPYQEF 10 Unmodified _VFTKSPYQEF_ 0 0 0 ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2 ENST00000529806.5_1_16:2012098-2012518:-|nuORF ENST00000529806.5_1_16:2012098-2012518:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 623.8131713867188 2 623.311146 1244.60774 0.40249 0.00025088 -0.25136 -0.00015667 0.15114 9.4206E-05 623.3108945877738 48.393 0.41925 52.11 51.959 52.378 3.7175 44 31 2 0 0 0 0.51021 2 9637 9637;9701 10.8 5.5026 1 117730 47413 3198 29905 29919 54771;54772 54771 -0.0047802255940041505 VFTKSPYQEF 10 Unmodified _VFTKSPYQEF_ 0 0 0 ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2 ENST00000529806.5_1_16:2012098-2012518:-|nuORF ENST00000529806.5_1_16:2012098-2012518:-|nuORF MSMS UPN48_class_I_Rep_3 7 623.3126220703125 2 623.311146 1244.60774 NaN NaN NaN NaN NaN NaN NaN 48.457 1 52.091 51.591 52.591 3.6339 0 0 0 0.53105 1 9623 9623 2.4985 0.43874 1 47414 3198 29905 29919 54773 54773 -0.0047802255940041505 VFTKSPYQEF 10 Unmodified _VFTKSPYQEF_ 0 0 0 ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2 ENST00000529806.5_1_16:2012098-2012518:-|nuORF ENST00000529806.5_1_16:2012098-2012518:-|nuORF MSMS UPN48_class_I_Rep_3 7 623.3106079101562 2 623.311146 1244.60774 NaN NaN NaN NaN NaN NaN NaN 48.513 1 52.147 51.647 52.647 3.6339 0 0 0 0.53105 1 9640 9640 12.241 2.8932 1 47415 3198 29905 29919 54774 54774 -0.0047802255940041505 VFTKSPYQEF 10 Unmodified _VFTKSPYQEF_ 0 0 0 ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2 ENST00000529806.5_1_16:2012098-2012518:-|nuORF ENST00000529806.5_1_16:2012098-2012518:-|nuORF MSMS UPN48_class_I_Rep_3 7 623.3112182617188 2 623.311146 1244.60774 NaN NaN NaN NaN NaN NaN NaN 48.67 1 52.299 51.799 52.799 3.6291 0 0 0 0.53105 1 9689 9689 9.544 2.4423 1 47416 3198 29905 29919 54775 54775 -0.0047802255940041505 VFTRYSLDE 9 Unmodified _VFTRYSLDE_ 0 0 0 REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|29|2|sense REV__MLT1F-int_dup365|chr12:62306288-62307551:+|1.7021953610750702|0.0369863929663123|5.52|151.0|29|2|sense MSMS UPN47_class_I_Rep_3 4 565.2684936523438 2 565.279846 1128.54514 NaN NaN NaN NaN NaN NaN NaN 40.341 1 43.578 43.078 44.078 3.2372 0 0 0 0.3967 1 8069 8069 1.4819 0.41044 1 + 47417 31709 29906 29920 54776 54776 -0.013991686275858228 VFTVPGPY 8 Unmodified _VFTVPGPY_ 0 0 0 LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|28|2|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|28|2|sense LTR49-int_dup108|chr1:175927452-175928985:+|1.1761044452124725|0.1274007154442167|3.21|150.0|28|2|sense MSMS UPN46_class_I_Rep_3 1 440.28515625 2 440.234179 878.453805 NaN NaN NaN NaN NaN NaN NaN 89.184 1 89.184 88.684 89.684 0 0 0 0 0.40738 1 21448 21448 0.79363 0 1 47418 15654 29907 29921 54777 54777 0.00971612465752969 VFTVTQRLL 9 Unmodified _VFTVTQRLL_ 0 0 0 ENST00000370223.7_2_10:102767131-102767407:+|nuORF ENST00000370223.7_2_10:102767131-102767407:+|nuORF ENST00000370223.7_2_10:102767131-102767407:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 538.82666015625 2 538.826766 1075.63898 0.45439 0.00024484 -0.22567 -0.0001216 0.22873 0.00012324 538.8265546156806 50.3 0.89075 53.921 53.533 54.423 3.621 120 57 3 0 0 0 0.42249 1 10340 10340 6.7232 0 1 510590 47419 6382 29908 29922 54778 54778 0.1041859526535518 VFVAFREFN 9 Unmodified _VFVAFREFN_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MSMS UPN48_class_I_Rep_2 6 564.7962646484375 2 564.795466 1127.57638 NaN NaN NaN NaN NaN NaN NaN 25.558 1 29.194 28.694 29.694 3.6363 0 0 0 0.39518 1 3128 3128 1.8442 0 1 47420 2763 29909 29923 54779 54779 0.01769449197195172 VFVFLLWR 8 Unmodified _VFVFLLWR_ 0 0 0 L1MB4_dup1865|chr3:183850865-183851877:+|1.194755285648721|0.1276530568262662|3.23|150.0|40|1|anti-sense L1MB4_dup1865|chr3:183850865-183851877:+|1.194755285648721|0.1276530568262662|3.23|150.0|40|1|anti-sense L1MB4_dup1865|chr3:183850865-183851877:+|1.194755285648721|0.1276530568262662|3.23|150.0|40|1|anti-sense MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.323663 1078.63277 NaN NaN NaN NaN NaN NaN NaN 38.585 1 38.585 38.085 39.085 0 0 0 0 0.40738 1 7356 7356 0.79363 0 1 47421 10486 29910 29924 54780 54780 0.09660121824504131 VFVFMHLK 8 Unmodified _VFVFMHLK_ 0 0 0 L1M4b_dup4079|chr18:79932030-79933693:+|1.5410267553065258|0.0896440323052806|4.1|151.0|115|3|anti-sense L1M4b_dup4079|chr18:79932030-79933693:+|1.5410267553065258|0.0896440323052806|4.1|151.0|115|3|anti-sense L1M4b_dup4079|chr18:79932030-79933693:+|1.5410267553065258|0.0896440323052806|4.1|151.0|115|3|anti-sense MSMS UPN46_class_I_Rep_3 1 510.7904968261719 2 510.788598 1019.56264 NaN NaN NaN NaN NaN NaN NaN 87.009 1 87.009 86.509 87.509 0 0 0 0 0.40738 1 20828 20828 0.79363 0.10326 1 47422 9022 29911 29925 54781 54781 0.053645001644099466 VFVFSCCY 8 Unmodified _VFVFSCCY_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|149|3|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|149|3|anti-sense MSMS UPN47_class_I_Rep_3 4 484.2062683105469 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 19.08 1 22.434 21.934 22.934 3.3545 0 0 0 0.40738 1 1718 1718 0.79363 0 1 + 47423 28020 29912 29926 54782 54782 -0.08659680037715134 VFVFSCCY 8 Unmodified _VFVFSCCY_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|149|3|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2061462402344 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 19.194 1 22.781 22.281 23.281 3.5874 0 0 0 0.40738 1 1406 1406 0.79363 0 1 + 47424 28020 29912 29926 54783 54783 -0.08659680037715134 VFVGLSSATF 10 Unmodified _VFVGLSSATF_ 0 0 0 ENSG00000188818|ENST00000283441|ZDHHC11 ENSG00000188818|ENST00000283441|ZDHHC11 ENSG00000188818|ENST00000283441|ZDHHC11 MSMS UPN48_class_I_Rep_1 5 514.277099609375 2 514.276575 1026.5386 NaN NaN NaN NaN NaN NaN NaN 81.097 1 84.66 84.16 85.16 3.5624 0 0 0 0.53105 1 19330 19330 12.241 0.74595 1 47425 5254 29913 29927 54784 54784 0.026389382117031346 VFVGLSSATF 10 Unmodified _VFVGLSSATF_ 0 0 0 ENSG00000188818|ENST00000283441|ZDHHC11 ENSG00000188818|ENST00000283441|ZDHHC11 ENSG00000188818|ENST00000283441|ZDHHC11 MSMS UPN48_class_I_Rep_2 6 514.2767333984375 2 514.276575 1026.5386 NaN NaN NaN NaN NaN NaN NaN 81.235 1 84.892 84.392 85.392 3.6567 0 0 0 0.53105 1 19279 19279 27.629 2.6378 1 47426 5254 29913 29927 54785 54785 0.026389382117031346 VFVHFPKFL 9 Unmodified _VFVHFPKFL_ 0 0 0 L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|151|2|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|151|2|anti-sense L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|151|2|anti-sense MSMS UPN47_class_I_Rep_1 2 567.329833984375 2 567.328945 1132.64334 NaN NaN NaN NaN NaN NaN NaN 94.32 1 98.071 97.571 98.571 3.7508 0 0 0 0.4007 1 23440 23440 0.52476 0 1 47427 9700 29914 29928 54786 54786 0.08232104478929614 VFVHVFTKAD 10 Unmodified _VFVHVFTKAD_ 0 0 0 REV__LTR5_Hs_dup62|chr1:161016835-161017804:+|1.247829148659056|0.0417262561452331|4.9|151.0|7|1|sense REV__LTR5_Hs_dup62|chr1:161016835-161017804:+|1.247829148659056|0.0417262561452331|4.9|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 581.8167114257812 2 581.816399 1161.61824 NaN NaN NaN NaN NaN NaN NaN 65.773 1 69.26 68.76 69.76 3.4866 0 0 0 0.53105 1 14975 14975 2.9952 0.93549 1 + 47428 30956 29915 29929 54787 54787 0.04390004885704002 VFVIVNSVV 9 Unmodified _VFVIVNSVV_ 0 0 0 L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|151|3|anti-sense L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|151|3|anti-sense L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|151|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.7423095703125 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 59.555 1 63.042 62.542 63.542 3.4868 0 0 0 0.3967 1 13075 13075 1.4819 0.68827 1 47429 13938 29916 29930 54788 54788 0.09176118971049618 VFVKGLIILL 10 Unmodified _VFVKGLIILL_ 0 0 0 REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF MSMS UPN48_class_I_Rep_3 7 557.8836669921875 2 557.883553 1113.75255 NaN NaN NaN NaN NaN NaN NaN 21.696 1 25.41 24.91 25.91 3.7144 0 0 0 0.53105 1 2085 2085 0 0 1 + 47430 21667 29917 29931 54789 54789 0.20022690378436891 VFVKHKLL 8 Unmodified _VFVKHKLL_ 0 0 0 REV__nc|ENSG00000103249|P51798-2|CLCN7 REV__nc|ENSG00000103249|P51798-2|CLCN7 MSMS UPN47_class_I_Rep_2 3 492.32501220703125 2 492.323663 982.632772 NaN NaN NaN NaN NaN NaN NaN 65.895 1 69.153 68.653 69.653 3.2588 0 0 0 0.40746 1 15796 15796 0.69038 0 1 + 47431 18223 29918 29932 54790 54790 0.1407612182453022 VFVLEESL 8 Unmodified _VFVLEESL_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 468.2575988769531 2 468.257851 934.501149 0.11031 5.1655E-05 -0.88772 -0.00041568 -0.77741 -0.00036403 468.2573814775785 74.13 0.11559 77.62 77.557 77.673 3.49 11 9 2 0 0 0 0.82752 1 17511 17511 8.5933 1.304 1 127560 47432 9615 29919 29933 54791 54791 0.031278469460858105 VFVLEESL 8 Unmodified _VFVLEESL_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 468.257851 934.501149 0.11031 5.1655E-05 -0.88772 -0.00041568 -0.77741 -0.00036403 468.2573814775785 74.13 0.11559 77.62 77.557 77.673 3.49 -0.011166 -0.00025394 NaN 8.5933 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 127560 47433 9615 29919 29933 0.031278469460858105 VFVLEESL 8 Unmodified _VFVLEESL_ 0 0 0 L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|237|3|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 468.257851 934.501149 0.24915 0.00011667 -0.37993 -0.0001779 -0.13078 -6.1238E-05 468.25756613034645 74.092 0.11636 77.643 77.585 77.701 3.5505 0.011166 0.00022162 NaN 8.5933 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 69194 47434 9615 29919 29933 0.031278469460858105 VFVLFFFNM 9 Unmodified _VFVLFFFNM_ 0 0 0 REV__ENSG00000169155.10,ZBTB43,chr9,+,I1.1,126805133,126808792|79|7.94|1|intron REV__ENSG00000169155.10,ZBTB43,chr9,+,I1.1,126805133,126808792|79|7.94|1|intron MSMS UPN48_class_I_Rep_3 7 581.8438720703125 2 582.301539 1162.58852 NaN NaN NaN NaN NaN NaN NaN 89.943 1 93.79 93.29 94.29 3.847 0 0 0 0.39428 1 21357 21357 2.0598 0.40713 1 + 47435 20299 29920 29934 54792 54792 0.01373349616028463 VFVLHDIQ 8 Unmodified _VFVLHDIQ_ 0 0 0 REV__ENSG00000085788|ENST00000397166|DDHD2 REV__ENSG00000085788|ENST00000397166|DDHD2 MSMS UPN47_class_I_Rep_1 2 485.8118591308594 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 112.98 1 116.55 116.05 117.05 3.572 0 0 0 0.40738 1 27865 27865 0.79363 0 1 + 47436 17959 29921 29935 54793 54793 0.042383752771456784 VFVNIQYTL 9 Unmodified _VFVNIQYTL_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 548.806396484375 2 548.8055 1095.59645 0.48344 0.00026531 -0.20567 -0.00011288 0.27776 0.00015244 548.8053959735721 77.563 0.58497 81.174 80.95 81.535 3.6116 73 54 2 0 0 0 0.11355 1 18347 18347 31.268 6.2774 1 98651 47437 3767 29922 29936 54794 54794 0.052472001371370425 VFVNIQYTL 9 Unmodified _VFVNIQYTL_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 548.7898559570312 2 548.8055 1095.59645 0.47557 0.000261 -0.053059 -2.9119E-05 0.42251 0.00023188 548.8052918071397 77.573 0.46508 81.175 81.003 81.468 3.6016 67 43 3 0 0 0 0.10568 3 18342 18339;18342;18378 32.786 2.3147 1 137970 47438 3767 29922 29936 54795;54796;54797 54796 0.052472001371370425 VFVPFTHF 8 Unmodified _VFVPFTHF_ 0 0 0 REV__L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|193|2|anti-sense REV__L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|193|2|anti-sense MSMS UPN46_class_I_Rep_3 1 497.2543640136719 2 497.263271 992.511988 NaN NaN NaN NaN NaN NaN NaN 66.778 1 66.778 66.278 67.278 0 0 0 0 0.39408 1 15170 15170 10.183 3.8293 1 + 47439 25341 29923 29937 54798 54798 0.01543294111047544 VFVVDSAAF 9 Unmodified _VFVVDSAAF_ 0 0 0 ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB MSMS UPN48_class_I_Rep_3 7 477.7498474121094 2 477.750193 953.485833 NaN NaN NaN NaN NaN NaN NaN 70.631 1 74.149 73.649 74.649 3.5185 0 0 0 0.089203 1 16352 16352 26.884 11.036 1 47440 3380 29924 29938 54799 54799 0.007229801489074816 VFVWGLRDI 9 Unmodified _VFVWGLRDI_ 0 0 0 HAL1M8_dup7|chr1:8583179-8584275:+|1.7034041067893737|0.0168561939540859|6.66|151.0|51|1|anti-sense HAL1M8_dup7|chr1:8583179-8584275:+|1.7034041067893737|0.0168561939540859|6.66|151.0|51|1|anti-sense HAL1M8_dup7|chr1:8583179-8584275:+|1.7034041067893737|0.0168561939540859|6.66|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.8133544921875 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 19.664 1 23.06 22.56 23.56 3.3963 0 0 0 0.40038 1 1897 1897 0.6015 0 1 47441 7950 29925 29939 54800 54800 0.06510326093894037 VFVWPWFL 8 Unmodified _VFVWPWFL_ 0 0 0 Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense Charlie21a_dup542|chr11:116915311-116916152:-|1.6789491483110708|0.0510927016266348|5.04|151.0|28|3|sense MSMS UPN48_class_I_Rep_2 6 546.8062133789062 2 547.297114 1092.57967 NaN NaN NaN NaN NaN NaN NaN 26.242 1 29.875 29.375 30.375 3.6332 0 0 0 0.40738 1 3317 3317 0.79363 0.10326 1 47442 501 29926 29940 54801 54801 0.03708744041841783 VFVYAVRK 8 Unmodified _VFVYAVRK_ 0 0 0 L1PREC2_dup283|chr1:155387274-155388032:-|4.172051026872714|0.0409639561697371|6.67|151.0|25|1|anti-sense L1PREC2_dup283|chr1:155387274-155388032:-|4.172051026872714|0.0409639561697371|6.67|151.0|25|1|anti-sense L1PREC2_dup283|chr1:155387274-155388032:-|4.172051026872714|0.0409639561697371|6.67|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_2 6 491.29852294921875 2 491.297645 980.580737 NaN NaN NaN NaN NaN NaN NaN 118.25 1 121.92 121.42 122.42 3.6627 0 0 0 0.40738 1 28351 28351 0.79363 0 1 47443 15441 29927 29941 54802 54802 0.08966958410758252 VFWGVMKM 8 Unmodified _VFWGVMKM_ 0 0 0 L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|58|3|sense L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|58|3|sense L1MB7_dup6349|chr5:36895013-36896600:-|1.5879604648658985|0.0683482633792966|4.54|151.0|58|3|sense MSMS UPN46_class_I_Rep_3 1 499.25360107421875 2 499.253534 996.492515 NaN NaN NaN NaN NaN NaN NaN 112.37 1 112.37 111.87 112.87 0 0 0 0 0.40738 1 27735 27735 0.79363 0 1 47444 10858 29928 29942 54803 54803 -0.0058712149572102135 VFWIHYIR 8 Unmodified _VFWIHYIR_ 0 0 0 REV__L1MB2_dup582|chr1:244976567-244977301:+|1.4028573191574052|0.03868518839538|5.18|151.0|31|1|anti-sense REV__L1MB2_dup582|chr1:244976567-244977301:+|1.4028573191574052|0.03868518839538|5.18|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 567.6814575195312 2 567.316369 1132.61818 NaN NaN NaN NaN NaN NaN NaN 67.859 1 67.859 67.359 68.359 0 0 0 0 0.40738 1 15465 15465 0.79363 0 1 + 47445 25753 29929 29943 54804 54804 0.05718049676352166 VFWLRILL 8 Unmodified _VFWLRILL_ 0 0 0 HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|59|3|anti-sense HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|59|3|anti-sense HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7848510742188 2 530.339313 1058.66407 NaN NaN NaN NaN NaN NaN NaN 53.169 1 56.753 56.253 57.253 3.5836 0 0 0 0.39624 1 11054 11054 9.3474 0 1 47446 7927 29930 29944 54805 54805 0.13708694858610215 VFWQTANN 8 Unmodified _VFWQTANN_ 0 0 0 HUERS-P3-int_dup9|chr1:93288732-93289468:-|1.3039978444046298|0.0370444837238843|5.14|151.0|26|1|anti-sense HUERS-P3-int_dup9|chr1:93288732-93289468:-|1.3039978444046298|0.0370444837238843|5.14|151.0|26|1|anti-sense HUERS-P3-int_dup9|chr1:93288732-93289468:-|1.3039978444046298|0.0370444837238843|5.14|151.0|26|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 490.7369079589844 2 490.235242 978.45593 -0.11176 -5.4787E-05 0.070026 3.4329E-05 -0.041732 -2.0458E-05 490.2352114941017 38.057 0.8071 41.444 41.121 41.928 3.3879 114 65 2 0 0 0 0.82752 1 7240 7240 0.79363 0 1 108520 47447 8456 29931 29945 54806 54806 -0.03415958796426821 VFWSEGLW 8 Unmodified _VFWSEGLW_ 0 0 0 MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 512.2490844726562 2 512.25036 1022.48617 0.25893 0.00013264 -1.751 -0.00089693 -1.492 -0.00076429 512.2495812031344 80.722 0.056625 84.284 84.238 84.295 3.5624 13 7 2 0 0 0 0.82752 1 19232 19232 40.449 8.1431 1 299720 47448 16243 29932 29946 54807 54807 -0.024176001312412154 VFWSEGLW 8 Unmodified _VFWSEGLW_ 0 0 0 MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 512.7508544921875 2 512.25036 1022.48617 0.32077 0.00016432 -2.1704 -0.0011118 -1.8496 -0.00094747 512.2494675382617 80.606 0.16726 84.25 84.176 84.344 3.6446 31 23 2 0 0 0 0.82752 1 19134 19134 49.669 9.7116 1 273800 47449 16243 29932 29946 54808 54808 -0.024176001312412154 VFWSEGLW 8 Unmodified _VFWSEGLW_ 0 0 0 MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MLT1A_dup8485|chr19:35162352-35162724:-|2.0528247560120536|0.4070308915249515|2.33|151.0|1|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 512.25036 1022.48617 0.33897 0.00017364 -2.2444 -0.0011497 -1.9054 -0.00097606 512.2493006580357 80.649 0.37263 84.312 84.216 84.589 3.6635 0.030049 -8.5822E-05 NaN 40.449 66 47 2 NaN NaN NaN NaN 0 NaN NaN 0 282330 47450 16243 29932 29946 -0.024176001312412154 VFWSSLSSF 9 Unmodified _VFWSSLSSF_ 0 0 0 L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.2611083984375 2 530.260925 1058.5073 0.32906 0.00017449 0.10176 5.3957E-05 0.43082 0.00022845 530.2609086124265 51.135 1.4714 54.66 53.991 55.463 3.5246 331 111 4 0 0 0 0.09884 4 10407 10362;10407;10612;10690 34.102 0 1 3342600 47451 9362 29933 29947 54809;54810;54811;54812 54810 -0.019616348223962632 VFWSSLSSF 9 Unmodified _VFWSSLSSF_ 0 0 0 L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 530.2611083984375 2 530.260925 1058.5073 0.41275 0.00021887 0.041575 2.2046E-05 0.45433 0.00024091 530.2608778951931 50.932 1.4725 54.6 53.997 55.469 3.6679 315 108 4 0 0 0 0.066041 6 10396 10352;10396;10476;10556;10597;10635 42.095 0 1 3029500 47452 9362 29933 29947 54813;54814;54815;54816;54817;54818 54814 -0.019616348223962632 VFWSSLSSF 9 Unmodified _VFWSSLSSF_ 0 0 0 L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|142|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 530.26123046875 2 530.260925 1058.5073 0.37597 0.00019936 0.10399 5.5142E-05 0.47996 0.0002545 530.2609016211118 51.045 1.4158 54.656 54.064 55.48 3.6105 318 109 4 0 0 0 0.13631 4 10313 10272;10313;10354;10558 26.884 0 1 3685300 47453 9362 29933 29947 54819;54820;54821;54822 54820 -0.019616348223962632 VFWWWHWWKII 11 Unmodified _VFWWWHWWKII_ 0 0 0 REV__MLT1G_dup1619|chrX:44908270-44908798:-|1.8837496245582344|0.014142751698633|7.06|151.0|4|1|sense REV__MLT1G_dup1619|chrX:44908270-44908798:-|1.8837496245582344|0.014142751698633|7.06|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 562.96337890625 3 562.962597 1685.86596 NaN NaN NaN NaN NaN NaN NaN 99.044 1 99.044 98.544 99.544 0 0 0 0 0.38417 1 24120 24120 0 0 1 + 47454 31724 29934 29948 54823 54823 0.05046178544148461 VFYAPQTYA 9 Unmodified _VFYAPQTYA_ 0 0 0 nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF nc|ENSG00000148584|Q9NQ94-5|A1CF nc|ENSG00000148584|Q9NQ94-5|A1CF MULTI-MSMS UPN48_class_I_Rep_3 7 530.2614135742188 2 530.260925 1058.5073 0.37597 0.00019936 0.10399 5.5142E-05 0.47996 0.0002545 530.2609016211118 51.045 1.4158 54.656 54.064 55.48 3.6105 318 109 4 0 0 0 0.40174 1 10643 10643 7.9102 0 1 3685300 47455 3516 29935 29949 54824 54824 -0.019616348223962632 VFYHCYGATY 10 Unmodified _VFYHCYGATY_ 0 0 0 REV__L1MB5_dup9562|chr22:24374784-24375672:+|3.53982062878526|0.0659697199021777|5.75|151.0|53|3|anti-sense REV__L1MB5_dup9562|chr22:24374784-24375672:+|3.53982062878526|0.0659697199021777|5.75|151.0|53|3|anti-sense MSMS UPN48_class_I_Rep_2 6 612.26513671875 2 612.263142 1222.51173 NaN NaN NaN NaN NaN NaN NaN 52.199 1 55.838 55.338 56.338 3.639 0 0 0 0.53105 1 10821 10821 14.838 0 1 + 47456 26105 29936 29950 54825 54825 -0.09062493671126504 VFYHFKRP 8 Unmodified _VFYHFKRP_ 0 0 0 Tigger1_dup8931|chr12:9989373-9991154:+|4.460917553444554|0.0766499785739882|5.86|151.0|23|2|sense Tigger1_dup8931|chr12:9989373-9991154:+|4.460917553444554|0.0766499785739882|5.86|151.0|23|2|sense Tigger1_dup8931|chr12:9989373-9991154:+|4.460917553444554|0.0766499785739882|5.86|151.0|23|2|sense MSMS UPN48_class_I_Rep_1 5 547.3014526367188 2 547.300719 1092.58688 NaN NaN NaN NaN NaN NaN NaN 26.126 1 29.693 29.193 30.193 3.5667 0 0 0 0.40738 1 3157 3157 0.79363 0 1 47457 33206 29937 29951 54826 54826 0.04429476642258123 VFYILANFL 9 Unmodified _VFYILANFL_ 0 0 0 L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2965087890625 2 550.312961 1098.61137 NaN NaN NaN NaN NaN NaN NaN 71.66 1 75.126 74.626 75.626 3.466 0 0 0 0.19137 1 16769 16769 16.942 4.4107 1 47458 10680 29938 29952 54827 54827 0.06600692005144992 VFYILANFL 9 Unmodified _VFYILANFL_ 0 0 0 L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.2955322265625 2 550.312961 1098.61137 NaN NaN NaN NaN NaN NaN NaN 71.669 1 75.135 74.635 75.635 3.466 0 0 0 0.1074 1 16772 16772 23.148 6.2061 1 47459 10680 29938 29952 54828 54828 0.06600692005144992 VFYILANFL 9 Unmodified _VFYILANFL_ 0 0 0 L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense L1MB7_dup11311|chr9:124705168-124705782:-|1.0345571552233137|0.0072157024542303|7.16|150.0|42|3|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2958984375 2 550.312961 1098.61137 NaN NaN NaN NaN NaN NaN NaN 71.439 1 74.989 74.489 75.489 3.5505 0 0 0 0.1074 1 16669 16669 23.148 6.2061 1 47460 10680 29938 29952 54829 54829 0.06600692005144992 VFYLLGFV 8 Unmodified _VFYLLGFV_ 0 0 0 REV__L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|59|1|anti-sense REV__L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_2 6 479.2771301269531 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 72.736 1 76.3 75.8 76.8 3.5645 0 0 0 0.40581 1 17041 17041 2.8892 0 1 + 47461 30696 29939 29953 54830 54830 0.057133489136276694 VFYPRTLN 8 Unmodified _VFYPRTLN_ 0 0 0 REV__L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|54|1|anti-sense REV__L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 505.27734375 2 505.276909 1008.53927 0.28282 0.0001429 -0.10897 -5.5061E-05 0.17385 8.7843E-05 505.27685335839766 62.633 1.2611 66.143 65.751 67.012 3.5104 292 96 4 0 0 0 0.82752 1 13837 13837 6.7232 0 1 3127200 + 47462 26733 29940 29954 54831 54831 0.035337776514325014 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MSMS UPN48_class_I_Rep_1 5 612.29296875 2 612.292225 1222.5699 NaN NaN NaN NaN NaN NaN NaN 80.368 1 83.917 83.417 84.417 3.5487 0 0 0 2.4032E-06 1 19170 19170 67.344 50.402 1 47463 1646 29941 29955 54832 54832 -0.032484887542068464 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MSMS UPN48_class_I_Rep_2 6 612.2930297851562 2 612.292225 1222.5699 NaN NaN NaN NaN NaN NaN NaN 80.267 1 83.911 83.411 84.411 3.6446 0 0 0 9.4308E-09 1 19057 19057 77.984 61.042 1 47464 1646 29941 29955 54833 54833 -0.032484887542068464 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MSMS UPN48_class_I_Rep_2 6 612.2926635742188 2 612.292225 1222.5699 NaN NaN NaN NaN NaN NaN NaN 80.384 1 84.029 83.529 84.529 3.6446 0 0 0 2.4032E-06 1 19077 19077 67.344 50.402 1 47465 1646 29941 29955 54834 54834 -0.032484887542068464 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS UPN48_class_I_Rep_3 7 612.2933349609375 2 612.292225 1222.5699 0.6009 0.00036793 0.37056 0.00022689 0.97146 0.00059482 612.2922869177329 80.309 0.27182 83.972 83.944 84.216 3.6635 51 41 2 0 0 0 0.0055873 1 19014 19014 77.984 65.453 1 730300 47466 1646 29941 29955 54835 54835 -0.032484887542068464 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 612.292225 1222.5699 0.44591 0.00027303 0.5719 0.00035017 1.0178 0.0006232 612.2924756855089 80.648 0.052773 84.21 84.185 84.238 3.5624 0.11886 0.00017938 NaN 77.984 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 129280 47467 1646 29941 29955 -0.032484887542068464 VFYQQFLD 8 Unmodified _VFYQQFLD_ 0 0 0 REV__L1PBa_dup228|chr2:121675343-121676931:+|2.353818827820193|0.1870922886581879|3.65|151.0|87|2|anti-sense REV__L1PBa_dup228|chr2:121675343-121676931:+|2.353818827820193|0.1870922886581879|3.65|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 530.2608032226562 2 530.260925 1058.5073 0.41275 0.00021887 0.041575 2.2046E-05 0.45433 0.00024091 530.2608778951931 50.932 1.4725 54.6 53.997 55.469 3.6679 315 108 4 0 0 0 0.82752 1 10677 10677 8.5933 0 1 3029500 + 47468 30649 29942 29956 54836 54836 -0.019616348223962632 VFYQQFLD 8 Unmodified _VFYQQFLD_ 0 0 0 REV__L1PBa_dup228|chr2:121675343-121676931:+|2.353818827820193|0.1870922886581879|3.65|151.0|87|2|anti-sense REV__L1PBa_dup228|chr2:121675343-121676931:+|2.353818827820193|0.1870922886581879|3.65|151.0|87|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 530.2613525390625 2 530.260925 1058.5073 0.37597 0.00019936 0.10399 5.5142E-05 0.47996 0.0002545 530.2609016211118 51.045 1.4158 54.656 54.064 55.48 3.6105 318 109 4 0 0 0 0.82752 1 10596 10596 8.5933 0 1 3685300 + 47469 30649 29942 29956 54837 54837 -0.019616348223962632 VFYVNKET 8 Unmodified _VFYVNKET_ 0 0 0 REV__L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|230|1|anti-sense REV__L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|230|1|anti-sense MSMS UPN47_class_I_Rep_3 4 500.2618408203125 2 500.260925 998.507297 NaN NaN NaN NaN NaN NaN NaN 31.487 1 34.786 34.286 35.286 3.2991 0 0 0 0.40738 1 5372 5372 0.79363 0 1 + 47470 29994 29943 29957 54838 54838 0.007983651776157785 VFYYKKKI 8 Unmodified _VFYYKKKI_ 0 0 0 ENST00000366835.7_1_1:226059699-226067035:-|nuORF;ENST00000436966.1_1_1:226059699-226065338:-|nuORF ENST00000366835.7_1_1:226059699-226067035:-|nuORF ENST00000366835.7_1_1:226059699-226067035:-|nuORF MSMS UPN48_class_I_Rep_2 6 544.8270263671875 2 544.828778 1087.643 NaN NaN NaN NaN NaN NaN NaN 72.663 1 76.228 75.728 76.728 3.5645 0 0 0 0.40625 1 17020 17020 2.3027 0 1 47471 6340 29944 29958 54839 54839 0.10268684759080315 VGAERTYR 8 Unmodified _VGAERTYR_ 0 0 0 REV__nc|ENSG00000102910|Q86WA8-2|LONP2 REV__nc|ENSG00000102910|Q86WA8-2|LONP2 MSMS UPN48_class_I_Rep_1 5 476.25421142578125 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 93.638 1 97.259 96.759 97.759 3.6208 0 0 0 0.40604 1 22510 22510 2.5775 0 1 + 47472 18205 29945 29959 54840 54840 0.016151324691804803 VGAERTYR 8 Unmodified _VGAERTYR_ 0 0 0 REV__nc|ENSG00000102910|Q86WA8-2|LONP2 REV__nc|ENSG00000102910|Q86WA8-2|LONP2 MSMS UPN48_class_I_Rep_1 5 476.2542724609375 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 93.88 1 97.501 97.001 98.001 3.6208 0 0 0 0.40604 1 22578 22578 2.5775 0 1 + 47473 18205 29945 29959 54841 54841 0.016151324691804803 VGAFLPLEL 9 Unmodified _VGAFLPLEL_ 0 0 0 HERVL-int_dup1825|chr12:14482763-14484428:-|3.328479525589114|0.2218102416947317|3.91|149.0|58|1|anti-sense HERVL-int_dup1825|chr12:14482763-14484428:-|3.328479525589114|0.2218102416947317|3.91|149.0|58|1|anti-sense HERVL-int_dup1825|chr12:14482763-14484428:-|3.328479525589114|0.2218102416947317|3.91|149.0|58|1|anti-sense MSMS UPN48_class_I_Rep_1 5 479.78387451171875 2 479.784036 957.553519 NaN NaN NaN NaN NaN NaN NaN 90.54 1 94.166 93.666 94.666 3.626 0 0 0 0.35339 1 21759 21759 7.9102 0 1 47474 8349 29946 29960 54842 54842 0.07304430079705071 VGAIACFIHF 10 Unmodified _VGAIACFIHF_ 0 0 0 MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|41|2|anti-sense MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|41|2|anti-sense MER4D1_dup315|chr4:37988731-37989589:+|1.3173458351209548|0.0780504172734085|4.08|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_2 6 539.2804565429688 2 539.281137 1076.54772 NaN NaN NaN NaN NaN NaN NaN 57.927 1 61.441 60.941 61.941 3.5142 0 0 0 0.53105 1 12571 12571 12.532 1.7076 1 47475 16038 29947 29961 54843 54843 0.01251008296389955 VGALPPRT 8 Unmodified _VGALPPRT_ 0 0 0 ENST00000376499.7_2_9:84303366-84303945:-|nuORF ENST00000376499.7_2_9:84303366-84303945:-|nuORF ENST00000376499.7_2_9:84303366-84303945:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 405.7454833984375 2 405.745245 809.475937 -0.2253 -9.1416E-05 -0.38894 -0.00015781 -0.61424 -0.00024922 405.74538209222476 28.678 0.19438 28.678 28.62 28.814 0 22 12 3 0 0 0 0.82752 1 4449 4449 2.3027 0 1 54768 47476 6450 29948 29962 54844 54844 0.06357836934171246 VGAMAGAAEPA 11 Unmodified _VGAMAGAAEPA_ 0 0 0 REV__ENST00000575359.5_1_19:39390642-39395726:+|nuORF REV__ENST00000575359.5_1_19:39390642-39395726:+|nuORF MSMS UPN46_class_I_Rep_3 1 472.72796630859375 2 472.728935 943.443317 NaN NaN NaN NaN NaN NaN NaN 53.508 1 53.508 53.008 54.008 0 0 0 0 0.20858 1 11519 11519 17.113 1.2657 1 + 47477 23106 29949 29963 54845 54845 -0.030667382509818708 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 436.7747802734375 2 436.774868 871.535184 0.1497 6.5384E-05 -0.35534 -0.00015521 -0.20565 -8.9821E-05 436.77470919316823 84.951 0.54846 84.951 84.741 85.289 0 164 53 4 0 0 0 0.82752 1 20207 20207 0.69038 0 1 20847000 + 47478 23001 29950 29964 54846 54846 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 436.7747497558594 2 436.774868 871.535184 0.15126 6.6065E-05 -0.32569 -0.00014225 -0.17444 -7.6189E-05 436.7746340311089 85.662 0.19353 85.662 85.606 85.8 0 52 17 4 0 0 0 0.82752 1 20460 20460 0.69038 0 1 822530 + 47479 23001 29950 29964 54847 54847 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 436.7747497558594 2 436.774868 871.535184 0.15096 6.5938E-05 -0.34812 -0.00015205 -0.19716 -8.6114E-05 436.7746568183267 85.853 0.22047 85.853 85.8 86.02 0 45 23 2 0 0 0 0.82752 1 20499 20499 0.69038 0 1 613710 + 47480 23001 29950 29964 54848 54848 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 436.77484130859375 2 436.774868 871.535184 -0.025517 -1.1145E-05 -0.023229 -1.0146E-05 -0.048746 -2.1291E-05 436.7748419421004 81.636 0.97749 85.212 84.774 85.751 3.5753 415 118 5 0 0 0 0.82752 1 19365 19365 0.69038 0 1 9700200 + 47481 23001 29950 29964 54849 54849 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 436.77447509765625 2 436.774868 871.535184 0.17041 7.4432E-05 -0.47849 -0.00020899 -0.30808 -0.00013456 436.77459858311136 82.647 0.1802 86.354 86.272 86.452 3.7066 34 22 2 0 0 0 0.82752 1 19578 19578 0.69038 0 1 78019 + 47482 23001 29950 29964 54850 54850 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 436.774868 871.535184 0.15126 6.6065E-05 -0.32569 -0.00014225 -0.17444 -7.6189E-05 436.7746340311089 85.662 0.19353 85.662 85.606 85.8 0 -0.18138 -0.00015993 NaN 0.69038 52 17 4 NaN NaN NaN NaN 0 NaN NaN 0 822530 + 47483 23001 29950 29964 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 436.774868 871.535184 0.15132 6.6094E-05 -0.024766 -1.0817E-05 0.12656 5.5276E-05 436.7746868935673 86.124 0.25476 86.124 86.02 86.275 0 -0.11414 8.1287E-05 NaN 0.69038 40 23 3 NaN NaN NaN NaN 0 NaN NaN 0 260120 + 47484 23001 29950 29964 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 436.774868 871.535184 -0.26167 -0.00011429 0.21949 9.5868E-05 -0.042178 -1.8422E-05 436.77485904120005 82.585 0.15889 85.983 85.896 86.055 3.3984 0.13969 0.00031632 NaN 0.69038 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 594380 + 47485 23001 29950 29964 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 436.774868 871.535184 -0.25899 -0.00011312 0.068281 2.9824E-05 -0.19071 -8.3299E-05 436.77486809240503 82.929 0.26669 86.328 86.237 86.503 3.3984 0.089494 0.00016257 NaN 0.69038 51 34 2 NaN NaN NaN NaN 0 NaN NaN 0 383640 + 47486 23001 29950 29964 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 436.774868 871.535184 -0.027354 -1.1947E-05 -0.14286 -6.24E-05 -0.17022 -7.4347E-05 436.77473795551043 82.31 0.22898 85.885 85.839 86.068 3.5753 0.04169 -2.1453E-07 NaN 0.69038 51 27 2 NaN NaN NaN NaN 0 NaN NaN 0 311350 + 47487 23001 29950 29964 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 436.774868 871.535184 -0.027827 -1.2154E-05 -0.17999 -7.8614E-05 -0.20782 -9.0768E-05 436.77465787687026 82.572 0.20885 86.148 86.053 86.262 3.5753 -0.090701 -5.4307E-05 NaN 0.69038 43 25 2 NaN NaN NaN NaN 0 NaN NaN 0 115080 + 47488 23001 29950 29964 0.09427732948370249 VGARVSRK 8 Unmodified _VGARVSRK_ 0 0 0 REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 436.774868 871.535184 0.17041 7.4432E-05 -0.47849 -0.00020899 -0.30808 -0.00013456 436.77459858311136 82.647 0.1802 86.354 86.272 86.452 3.7066 0.11534 -0.00031507 NaN 0.69038 34 22 2 NaN NaN NaN NaN 0 NaN NaN 0 78019 + 47489 23001 29950 29964 0.09427732948370249 VGAVRRGPR 9 Unmodified _VGAVRRGPR_ 0 0 0 REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF MSMS UPN48_class_I_Rep_2 6 484.2977600097656 2 484.299042 966.583531 NaN NaN NaN NaN NaN NaN NaN 107.53 1 111.2 110.7 111.7 3.6783 0 0 0 0.19137 1 25416 25416 16.942 1.0951 1 + 47490 22067 29951 29965 54851 54851 0.09890226588265705 VGCFYLCY 8 Unmodified _VGCFYLCY_ 0 0 0 REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.20635986328125 2 484.20625 966.397946 0.25491 0.00012343 -0.37333 -0.00018077 -0.11843 -5.7343E-05 484.20613543377516 18.306 0.53483 21.837 21.598 22.132 3.5313 104 68 2 0 0 0 0.82752 1 1198 1198 0.79363 0 1 57313 + 47491 29067 29952 29966 54852 54852 -0.08659680037737871 VGCFYLCY 8 Unmodified _VGCFYLCY_ 0 0 0 REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.2063903808594 2 484.20625 966.397946 0.33381 0.00016163 -0.13521 -6.5471E-05 0.1986 9.6162E-05 484.20617480608894 18.272 0.33506 21.923 21.75 22.085 3.6509 59 42 2 0 0 0 0.82752 1 1220 1220 0.79363 0 1 38276 + 47492 29067 29952 29966 54853 54853 -0.08659680037737871 VGCFYLCY 8 Unmodified _VGCFYLCY_ 0 0 0 REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense MSMS UPN48_class_I_Rep_2 6 484.2068786621094 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 17.448 1 21.1 20.6 21.6 3.6518 0 0 0 0.40738 1 1019 1019 0.79363 0 1 + 47493 29067 29952 29966 54854 54854 -0.08659680037737871 VGCFYLCY 8 Unmodified _VGCFYLCY_ 0 0 0 REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense REV__L1PA12_dup340|chr2:226938417-226940342:+|1.1097209110421284|0.0397969548909849|4.8|151.0|118|3|anti-sense MSMS UPN48_class_I_Rep_2 6 484.2065124511719 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 17.726 1 21.378 20.878 21.878 3.6518 0 0 0 0.40738 1 1079 1079 0.79363 0 1 + 47494 29067 29952 29966 54855 54855 -0.08659680037737871 VGCHHIWL 8 Unmodified _VGCHHIWL_ 0 0 0 REV__ENST00000380737.7_1_8:26228077-26228125:+|nuORF REV__ENST00000380737.7_1_8:26228077-26228125:+|nuORF MSMS UPN46_class_I_Rep_3 1 482.51611328125 2 482.744722 963.474891 NaN NaN NaN NaN NaN NaN NaN 68.925 1 68.925 68.425 69.425 0 0 0 0 0.40738 1 15766 15766 0.79363 0 1 + 47495 22055 29953 29967 54856 54856 -0.008307007063649507 VGDDSSTQ 8 Unmodified _VGDDSSTQ_ 0 0 0 Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|5|1|sense Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|5|1|sense Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 404.67169189453125 2 404.669597 807.324641 -0.6188 -0.00025041 1.9404 0.00078523 1.3216 0.00053482 404.67192023336787 72.243 0.15334 75.54 75.495 75.648 3.2971 17 11 2 0 0 0 0.82752 1 17729 17729 4.756 0.42677 1 62060 47496 33408 29954 29968 54857 54857 -0.0867281395497912 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MULTI-MSMS UPN47_class_I_Rep_1 2 479.7527770996094 2 479.753267 957.491981 -0.021485 -1.0307E-05 -0.21785 -0.00010452 -0.23934 -0.00011482 479.7531567614738 50.079 0.47569 53.708 53.352 53.828 3.6285 42 25 2 0 0 0 0.25207 1 10932 10932 16.942 8.1969 1 58616 47497 2800 29955 29969 54858 54858 0.01153498380426754 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MSMS UPN47_class_I_Rep_2 3 479.7532653808594 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 50.185 1 53.528 53.028 54.028 3.3431 0 0 0 0.35339 1 11009 11009 7.9102 3.5809 1 47498 2800 29955 29969 54859 54859 0.01153498380426754 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MSMS UPN47_class_I_Rep_2 3 479.753173828125 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 50.369 1 53.712 53.212 54.212 3.3431 0 0 0 0.1074 1 11065 11065 23.148 14.403 1 47499 2800 29955 29969 54860 54860 0.01153498380426754 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MSMS UPN47_class_I_Rep_3 4 479.75390625 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 50.352 1 53.578 53.078 54.078 3.2262 0 0 0 0.1724 1 11116 11116 18.135 5.6034 1 47500 2800 29955 29969 54861 54861 0.01153498380426754 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MSMS UPN47_class_I_Rep_3 4 479.7536315917969 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 50.495 1 53.721 53.221 54.221 3.2262 0 0 0 0.19137 1 11160 11160 16.942 9.0321 1 47501 2800 29955 29969 54862 54862 0.01153498380426754 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS UPN47_class_I_Rep_1 2 480.26904296875 2 480.269084 958.523616 0.087033 4.1799E-05 -0.064757 -3.1101E-05 0.022276 1.0699E-05 480.2689618918873 55.274 0.8487 58.753 58.408 59.257 3.4785 105 52 3 0 0 0 0.20317 4 12517 12473;12517;12559;12601 20.415 10.341 1 260230 47502 5156 29956 29970 54863;54864;54865;54866 54864 0.04269491134380132 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2688903808594 2 480.269084 958.523616 0.25051 0.00012031 -0.267 -0.00012823 -0.016487 -7.918E-06 480.26882974303 55.548 0.80745 58.859 58.491 59.298 3.3102 105 46 3 0 0 0 0.14216 4 12664 12582;12624;12664;12700 26.268 12.362 1 260930 47503 5156 29956 29970 54867;54868;54869;54870 54869 0.04269491134380132 VGDIPGVRF 9 Unmodified _VGDIPGVRF_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS UPN47_class_I_Rep_3 4 480.2691650390625 2 480.269084 958.523616 0.059835 2.8737E-05 -0.020974 -1.0073E-05 0.038861 1.8664E-05 480.26895171205786 55.609 0.80729 58.787 58.491 59.298 3.1779 114 51 3 0 0 0 0.16799 4 12734 12688;12734;12773;12812 23.79 11.549 1 295520 47504 5156 29956 29970 54871;54872;54873;54874 54872 0.04269491134380132 VGDKRINLFPY 11 Unmodified _VGDKRINLFPY_ 0 0 0 REV__Charlie2b_dup1877|chr8:65830272-65831182:+|1.1888607551595962|0.0603556390925507|4.3|151.0|75|3|anti-sense REV__Charlie2b_dup1877|chr8:65830272-65831182:+|1.1888607551595962|0.0603556390925507|4.3|151.0|75|3|anti-sense MSMS UPN46_class_I_Rep_3 1 440.79949951171875 3 441.24695 1320.71902 NaN NaN NaN NaN NaN NaN NaN 29.922 1 29.922 29.422 30.422 0 0 0 0 0.38417 1 4802 4802 1.4551 0.12547 1 + 47505 17373 29957 29971 54875 54875 0.07149036868554504 VGDPSVHLL 9 Unmodified _VGDPSVHLL_ 0 0 0 nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 MSMS UPN48_class_I_Rep_2 6 468.76141357421875 2 468.761092 935.507631 NaN NaN NaN NaN NaN NaN NaN 49.332 1 53.05 52.55 53.55 3.7175 0 0 0 0.29868 1 9956 9956 10.824 0.75 1 47506 1439 29958 29972 54876 54876 0.03729784897484478 VGDPSVHLL 9 Unmodified _VGDPSVHLL_ 0 0 0 nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 nc|ENSG00000099364|Q6PCT2-2|FBXL19 MULTI-MSMS UPN48_class_I_Rep_3 7 469.2624816894531 2 468.761092 935.507631 0.10125 4.746E-05 0.017434 8.1725E-06 0.11868 5.5633E-05 468.76094776534836 49.512 0.39792 53.141 52.85 53.248 3.6291 35 27 2 0 0 0 0.28552 1 9942 9942 14.838 8.1151 1 75986 47507 1439 29958 29972 54877 54877 0.03729784897484478 VGDRLTYL 8 Unmodified _VGDRLTYL_ 0 0 0 REV__ENST00000502852.1_1_3:131101978-131102182:+|nuORF REV__ENST00000502852.1_1_3:131101978-131102182:+|nuORF MSMS UPN48_class_I_Rep_3 7 468.7616271972656 2 468.761092 935.507631 NaN NaN NaN NaN NaN NaN NaN 49.642 1 53.271 52.771 53.771 3.6291 0 0 0 0.40501 1 9987 9987 3.9444 0 1 + 47508 21130 29959 29973 54878 54878 0.03729784897461741 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_1 2 482.26116943359375 2 482.260925 962.507297 0.13482 6.5021E-05 0.01136 5.4784E-06 0.14618 7.0499E-05 482.26083097068226 62.53 0.75168 65.895 65.63 66.382 3.3642 68 48 2 0 0 0 0.17897 3 14708 14708;14750;14800 22.736 6.8891 1 149030 47509 3728 29960 29974 54879;54880;54881 54879 0.024543651776298248 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_2 3 482.26116943359375 2 482.260925 962.507297 0.18737 9.0362E-05 -0.1031 -4.9723E-05 0.084266 4.0638E-05 482.2607438704374 62.811 0.66335 66.067 65.698 66.362 3.2558 74 40 3 0 0 0 0.1249 3 14819 14819;14857;14900 29.082 7.3349 1 215630 47510 3728 29960 29974 54882;54883;54884 54882 0.024543651776298248 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS UPN47_class_I_Rep_3 4 482.2607727050781 2 482.260925 962.507297 0.075548 3.6434E-05 0.091833 4.4288E-05 0.16738 8.0721E-05 482.26087233095024 62.762 0.75117 65.932 65.635 66.386 3.1698 84 43 3 0 0 0 0.1249 2 14956 14915;14956 29.082 7.3349 1 180270 47511 3728 29960 29974 54885;54886 54886 0.024543651776298248 VGDTQVVVF 9 Unmodified _VGDTQVVVF_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 482.260925 962.507297 0.13482 6.5021E-05 0.01136 5.4784E-06 0.14618 7.0499E-05 482.26083097068226 62.53 0.75168 65.895 65.63 66.382 3.3642 -0.069894 1.254E-05 NaN 29.082 68 48 2 NaN NaN NaN NaN 0 NaN NaN 0 149030 47512 3728 29960 29974 0.024543651776298248 VGDVEVDCAVR 11 Unmodified _VGDVEVDCAVR_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MSMS UPN47_class_I_Rep_2 3 581.2845458984375 2 581.282063 1160.54957 NaN NaN NaN NaN NaN NaN NaN 22.058 1 25.482 24.982 25.982 3.4241 0 0 0 0.38417 1 2560 2560 1.0715 0 1 + 47513 19023 29961 29975 54887 54887 -0.024280274762986664 VGEEYEQTLF 10 Unmodified _VGEEYEQTLF_ 0 0 0 L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|112|2|sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|112|2|sense L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|112|2|sense MSMS UPN47_class_I_Rep_2 3 405.5235290527344 3 405.524038 1213.55028 NaN NaN NaN NaN NaN NaN NaN 45.043 1 48.399 47.899 48.899 3.3556 0 0 0 0.53105 1 9453 9453 0.62683 0.21856 1 47514 14805 29962 29976 54888 54888 -0.04794909555607774 VGERLLRA 8 Unmodified _VGERLLRA_ 0 0 0 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 REV__nc|ENSG00000183914|Q9P225-2|DNAH2 MSMS UPN47_class_I_Rep_2 3 457.2821044921875 2 457.282526 912.550499 NaN NaN NaN NaN NaN NaN NaN 36.123 1 39.534 39.034 40.034 3.4114 0 0 0 0.38112 1 6740 6740 14.838 0 1 + 47515 20806 29963 29977 54889 54889 0.09072599745559273 VGETPILDT 9 Unmodified _VGETPILDT_ 0 0 0 REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.7502136230469 2 472.75039 943.486227 NaN NaN NaN NaN NaN NaN NaN 62.637 1 66.099 65.599 66.599 3.4625 0 0 0 0.37476 1 14035 14035 6.7232 0 1 + 47516 20603 29964 29978 54890 54890 0.012223550780959158 VGETPILDT 9 Unmodified _VGETPILDT_ 0 0 0 REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.7511901855469 2 472.75039 943.486227 NaN NaN NaN NaN NaN NaN NaN 63.044 1 66.507 66.007 67.007 3.4625 0 0 0 0.37476 1 14160 14160 6.7232 0 1 + 47517 20603 29964 29978 54891 54891 0.012223550780959158 VGETPILDT 9 Unmodified _VGETPILDT_ 0 0 0 REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 472.75030517578125 2 472.75039 943.486227 0.22004 0.00010402 -0.58672 -0.00027737 -0.36668 -0.00017335 472.7500048902214 62.601 0.3736 66.112 65.907 66.281 3.5104 35 23 2 0 0 0 0.42249 1 13907 13907 6.7232 0 1 63540 + 47518 20603 29964 29978 54892 54892 0.012223550780959158 VGEVVKQA 8 Unmodified _VGEVVKQA_ 0 0 0 ENST00000476372.1_1_11:293373-294746:+|nuORF ENST00000476372.1_1_11:293373-294746:+|nuORF ENST00000476372.1_1_11:293373-294746:+|nuORF MSMS UPN48_class_I_Rep_1 5 415.2426452636719 2 415.242535 828.470518 NaN NaN NaN NaN NaN NaN NaN 29.629 1 33.179 32.679 33.679 3.5499 0 0 0 0.40604 1 4146 4146 2.5775 0 1 47519 6969 29965 29979 54893 54893 0.04942113351705757 VGFFIFLYI 9 Unmodified _VGFFIFLYI_ 0 0 0 L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|81|3|anti-sense L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|81|3|anti-sense L1M4a1_dup671|chr3:182848781-182850081:+|1.628914694086524|0.1048611018096757|3.96|151.0|81|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.8161010742188 2 559.817879 1117.6212 NaN NaN NaN NaN NaN NaN NaN 76.921 1 80.19 79.69 80.69 3.269 0 0 0 0.12887 1 19141 19141 20.871 0 1 47520 8962 29966 29980 54894 54894 0.06709880010498637 VGFIPVIH 8 Unmodified _VGFIPVIH_ 0 0 0 L1M5_dup30668|chrX:15698340-15698772:+|2.829123872937299|0.4294926779792909|2.72|151.0|3|1|sense L1M5_dup30668|chrX:15698340-15698772:+|2.829123872937299|0.4294926779792909|2.72|151.0|3|1|sense L1M5_dup30668|chrX:15698340-15698772:+|2.829123872937299|0.4294926779792909|2.72|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 440.79931640625 2 441.265813 880.517074 NaN NaN NaN NaN NaN NaN NaN 61.882 1 65.35 64.85 65.85 3.4678 0 0 0 0.40738 1 13805 13805 0.79363 0 1 47521 9139 29967 29981 54895 54895 0.07203597973636988 VGFKEVPK 8 Unmodified _VGFKEVPK_ 0 0 0 REV__ENSG00000101493|ENST00000443185|ZNF516 REV__ENSG00000101493|ENST00000443185|ZNF516 MULTI-MSMS UPN46_class_I_Rep_3 1 452.2687683105469 2 452.268553 902.522553 -0.068395 -3.0933E-05 1.0871 0.00049164 1.0187 0.00046071 452.26899052350325 30.035 0.13687 30.035 30.015 30.152 0 20 11 2 0 0 0 0.82752 1 4856 4856 2.5775 0 1 296360 + 47522 18165 29968 29982 54896 54896 0.06739276765472368 VGFKEVPK 8 Unmodified _VGFKEVPK_ 0 0 0 REV__ENSG00000101493|ENST00000443185|ZNF516 REV__ENSG00000101493|ENST00000443185|ZNF516 MULTI-SECPEP UPN46_class_I_Rep_3 1 451.63739013671875 2 452.268553 902.522553 -0.015316 -6.9269E-06 0.88712 0.00040122 0.8718 0.00039429 452.26885069368 32.453 0.12507 32.453 32.427 32.552 0 11 8 3 0 0 0 0.72333 1 5550 5550 2.5775 0 1 139600 + 47523 18165 29968 29982 54897 54897 0.06739276765472368 VGFLFLML 8 Unmodified _VGFLFLML_ 0 0 0 REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|147|3|anti-sense REV__HERVIP10B3-int_dup18|chr1:235672704-235675132:+|5.231687678306543|0.2084270719934295|4.65|151.0|147|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 470.27227783203125 2 470.27225 938.529947 0.20396 9.5919E-05 -0.37313 -0.00017547 -0.16916 -7.9552E-05 470.2719776727439 82.956 0.70031 86.625 86.301 87.001 3.669 164 87 2 0 0 0 0.82752 1 19644 19644 0.79363 0 1 424140 + 47524 23727 29969 29983 54898 54898 0.05822293041512694 VGFLSRDL 8 Unmodified _VGFLSRDL_ 0 0 0 L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|150|1|anti-sense L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|150|1|anti-sense L1PA6_dup4790|chr12:92789555-92793820:+|1.9708633313445405|0.3584030099879728|2.46|149.0|150|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 454.2796325683594 2 453.75581 905.497067 0.10889 4.941E-05 -1.8501 -0.00083951 -1.7413 -0.0007901 453.75381700885947 40.118 0.054214 43.86 43.848 43.902 3.7413 6 5 2 0 0 0 0.72333 1 7203 7203 2.5775 0 1 39355 47525 14649 29970 29984 54899 54899 0.04053802243026894 VGFSSNSN 8 Unmodified _VGFSSNSN_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|289|2|anti-sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|289|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.8582458496094 2 406.182675 810.350796 -0.39135 -0.00015896 -0.17141 -6.9625E-05 -0.56276 -0.00022858 406.18253639832335 21.215 0.23057 21.215 21.111 21.342 0 33 22 2 0 0 0 0.72333 1 2343 2343 2.8892 1.045 1 46618 + 47526 23310 29971 29985 54900 54900 -0.06196499992847748 VGFTDAVIH 9 Unmodified _VGFTDAVIH_ 0 0 0 ENSG00000181518|ENST00000641687|OR8D4 ENSG00000181518|ENST00000641687|OR8D4 ENSG00000181518|ENST00000641687|OR8D4 MULTI-MSMS UPN47_class_I_Rep_1 2 479.7527160644531 2 479.753267 957.491981 -0.021485 -1.0307E-05 -0.21785 -0.00010452 -0.23934 -0.00011482 479.7531567614738 50.079 0.47569 53.708 53.352 53.828 3.6285 42 25 2 0 0 0 0.40174 1 10887 10887 7.9102 0 1 58616 47527 4919 29972 29986 54901 54901 0.01153498380426754 VGFVLLPD 8 Unmodified _VGFVLLPD_ 0 0 0 nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF nc|ENSG00000138798|P01133-2|EGF nc|ENSG00000138798|P01133-2|EGF MSMS UPN46_class_I_Rep_3 1 430.2560729980469 2 430.249829 858.485105 NaN NaN NaN NaN NaN NaN NaN 38.285 1 38.285 37.785 38.785 0 0 0 0 0.40581 1 7277 7277 2.8892 0.31174 1 47528 3116 29973 29987 54902 54902 0.050201854998590534 VGFWCGCPF 9 Unmodified _VGFWCGCPF_ 0 0 0 L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|142|2|anti-sense;L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|206|1|anti-sense;L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|229|2|anti-sense;L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|143|1|anti-sense;L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|359|3|anti-sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|347|3|anti-sense L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|142|2|anti-sense L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|142|2|anti-sense MSMS UPN46_class_I_Rep_3 1 508.2117614746094 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 28.35 1 28.35 27.85 28.85 0 0 0 0 0.39326 1 4339 4339 2.3027 0 1 47529 14377 29974 29988 54903 54903 -0.09744857943587704 VGFWCGCPF 9 Unmodified _VGFWCGCPF_ 0 0 0 L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|142|2|anti-sense;L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|206|1|anti-sense;L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|229|2|anti-sense;L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|143|1|anti-sense;L1PA5_dup2528|chr4:20716349-20722473:-|1.2313961765113537|0.4557962924249416|1.43|151.0|359|3|anti-sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|347|3|anti-sense L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|142|2|anti-sense L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|142|2|anti-sense MSMS UPN46_class_I_Rep_3 1 508.2118225097656 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 28.56 1 28.56 28.06 29.06 0 0 0 0 0.381 1 4403 4403 5.2307 0 1 47530 14377 29974 29988 54904 54904 -0.09744857943587704 VGFYLLVF 8 Unmodified _VGFYLLVF_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|354|2|anti-sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|354|2|anti-sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|354|2|anti-sense MSMS UPN48_class_I_Rep_1 5 479.2768859863281 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 74.187 1 77.677 77.177 78.177 3.49 0 0 0 0.40581 1 17523 17523 2.8892 0 1 47531 15326 29975 29989 54905 54905 0.05713348913616301 VGGAGCGV 8 Unmodified _VGGAGCGV_ 0 0 0 ENSG00000163013|ENST00000520530|FBXO41 ENSG00000163013|ENST00000520530|FBXO41 ENSG00000163013|ENST00000520530|FBXO41 MULTI-SECPEP UPN47_class_I_Rep_2 3 619.78857421875 1 619.286822 618.279546 0.51327 0.00031786 -4.325 -0.0026784 -3.8117 -0.0023605 619.2821678825828 51.721 0.13274 55.055 54.959 55.092 3.3332 9 6 2 0 0 0 0.72333 1 11475 11475 0.79363 0 1 70020 47532 3977 29976 29990 54906 54906 -0.04486291231228279 VGGCRALR 8 Unmodified _VGGCRALR_ 0 0 0 REV__AluJr_dup22492|chr5:69921347-69921641:+|2.0524397568474617|0.1631292455190872|3.65|151.0|10|3|sense REV__AluJr_dup22492|chr5:69921347-69921641:+|2.0524397568474617|0.1631292455190872|3.65|151.0|10|3|sense MSMS UPN48_class_I_Rep_3 7 416.2276916503906 2 416.234522 830.45449 NaN NaN NaN NaN NaN NaN NaN 40.046 1 43.696 43.196 44.196 3.6509 0 0 0 0.40604 1 7074 7074 2.5775 0 1 + 47533 17033 29977 29991 54907 54907 0.03248128633822489 VGGEALGRL 9 Unmodified _VGGEALGRL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN46_class_I_Rep_3 1 436.2533874511719 2 436.253434 870.492316 NaN NaN NaN NaN NaN NaN NaN 44.661 1 44.661 44.161 45.161 0 0 0 0 0.027993 1 9016 9016 47.594 15.289 1 + 47534 5729 29978 29992 54908 54908 0.051889181002820806 VGGFIKDH 8 Unmodified _VGGFIKDH_ 0 0 0 L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|124|3|anti-sense L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|124|3|anti-sense L1MA4A_dup5742|chr18:9227686-9229689:-|3.5514943882992425|0.1027038132277349|5.11|151.0|124|3|anti-sense MSMS UPN48_class_I_Rep_1 5 436.73309326171875 2 436.734877 871.455202 NaN NaN NaN NaN NaN NaN NaN 94.424 1 98.045 97.545 98.545 3.6208 0 0 0 0.40738 1 22722 22722 0.79363 0 1 47535 9844 29979 29993 54909 54909 0.014332465545066952 VGGGGGGGGG 10 Unmodified _VGGGGGGGGG_ 0 0 0 REV__ENSG00000139154|ENST00000266508|AEBP2;REV__ENSG00000162613|ENST00000370768|FUBP1 REV__ENSG00000162613|ENST00000370768|FUBP1 MULTI-SECPEP UPN47_class_I_Rep_3 4 631.789794921875 1 631.279429 630.272152 0.42976 0.0002713 3.5232 0.0022241 3.9529 0.0024954 631.2771388156812 48.817 0.063839 52.051 52.029 52.092 3.2345 7 4 2 0 0 0 0.84575 1 10642 10642 0 0 1 43183 + 47536 19305;19932 29980 29994 54910 54910 -0.05777307507275964 VGGHRASK 8 Unmodified _VGGHRASK_ 0 0 0 REV__AluJo_dup51765|chr12:109980073-109980367:-|1.0337100255063454|0.0265175468679305|5.28|151.0|3|1|sense REV__AluJo_dup51765|chr12:109980073-109980367:-|1.0337100255063454|0.0265175468679305|5.28|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 406.22943115234375 2 406.230294 810.446034 NaN NaN NaN NaN NaN NaN NaN 26.11 1 29.743 29.243 30.243 3.6332 0 0 0 0.40746 1 3279 3279 0.69038 0 1 + 47537 17006 29981 29995 54911 54911 0.03322897988846307 VGGLRTQH 8 Unmodified _VGGLRTQH_ 0 0 0 MER68_dup1017|chr12:100331947-100332481:-|1.053967094502024|0.390490971054907|1.43|151.0|28|2|anti-sense MER68_dup1017|chr12:100331947-100332481:-|1.053967094502024|0.390490971054907|1.43|151.0|28|2|anti-sense MER68_dup1017|chr12:100331947-100332481:-|1.053967094502024|0.390490971054907|1.43|151.0|28|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.24334716796875 2 434.243401 866.472249 NaN NaN NaN NaN NaN NaN NaN 75.848 1 75.848 75.348 76.348 0 0 0 0 0.40738 1 17661 17661 0.79363 0 1 47538 16194 29982 29996 54912 54912 0.03367167160331519 VGGPDLRR 8 Unmodified _VGGPDLRR_ 0 0 0 nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 nc|ENSG00000185842|Q0VDD8|DNAH14 MULTI-MSMS UPN47_class_I_Rep_1 2 435.251220703125 2 435.251226 868.487899 -0.011424 -4.9724E-06 -0.6377 -0.00027756 -0.64913 -0.00028253 435.25083879887944 67.953 0.80317 71.317 70.91 71.713 3.3646 87 60 2 0 0 0 0.82752 1 16483 16483 0.69038 0 1 81444 47539 16779 29983 29997 54913 54913 0.048394536773685104 VGGRARRA 8 Unmodified _VGGRARRA_ 0 0 0 ENST00000574412.5_2_17:4643017-4643206:-|nuORF ENST00000574412.5_2_17:4643017-4643206:-|nuORF ENST00000574412.5_2_17:4643017-4643206:-|nuORF MSMS UPN46_class_I_Rep_3 1 421.7579040527344 2 421.75701 841.499467 NaN NaN NaN NaN NaN NaN NaN 20.248 1 20.248 19.748 20.748 0 0 0 0 0.40604 1 2072 2072 2.5775 0 1 47540 7525 29984 29998 54914 54914 0.07237695491357954 VGGYACHY 8 Unmodified _VGGYACHY_ 0 0 0 L1MC4a_dup4188|chr7:30530217-30530671:-|1.3737781769536197|0.4924926993460984|1.48|151.0|13|3|sense L1MC4a_dup4188|chr7:30530217-30530671:-|1.3737781769536197|0.4924926993460984|1.48|151.0|13|3|sense L1MC4a_dup4188|chr7:30530217-30530671:-|1.3737781769536197|0.4924926993460984|1.48|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 435.1837463378906 2 435.184163 868.353773 NaN NaN NaN NaN NaN NaN NaN 112.27 1 115.79 115.29 116.29 3.5226 0 0 0 0.40581 1 27338 27338 2.8892 0.31174 1 47541 11576 29985 29999 54915 54915 -0.0856694813970762 VGHKIALTVW 10 Unmodified _VGHKIALTVW_ 0 0 0 L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.15223 8.5605E-05 -0.093798 -5.2746E-05 0.058434 3.2859E-05 562.3346844473051 28.527 0.33382 28.527 28.481 28.814 0 41 23 3 0 0 0 0.56543 1 4389 4389 0 0 1 2494000 47542 10667 29986 30000 54916 54916 0.09854301502241469 VGHKIALTVW 10 Unmodified _VGHKIALTVW_ 0 0 0 L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.334716796875 2 562.334759 1122.65496 0.18151 0.00010207 -0.07241 -4.0718E-05 0.1091 6.1349E-05 562.3346081814112 29.947 0.18443 29.947 29.801 29.985 0 24 17 2 0 0 0 0.56543 1 4795 4795 0 0 1 460430 47543 10667 29986 30000 54917 54917 0.09854301502241469 VGHKIALTVW 10 Unmodified _VGHKIALTVW_ 0 0 0 L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.30092 0.00016922 -0.048842 -2.7466E-05 0.25208 0.00014175 562.3347092276555 35.33 0.11003 35.33 35.252 35.362 0 11 7 2 0 0 0 0.56543 1 6407 6407 0 0 1 550460 47544 10667 29986 30000 54918 54918 0.09854301502241469 VGHKIALTVW 10 Unmodified _VGHKIALTVW_ 0 0 0 L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense L1MB7_dup10312|chr8:129928703-129929214:+|1.2445459050859102|0.0113999776171501|6.77|150.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 562.3341064453125 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 22.101 1 22.101 21.601 22.601 0 0 0 0 0.53105 1 2573 2573 0 0 1 47545 10667 29986 30000 54919 54919 0.09854301502241469 VGHWSGCS 8 Unmodified _VGHWSGCS_ 0 0 0 Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|43|3|anti-sense Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|43|3|anti-sense Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 416.7558898925781 2 416.673963 831.333372 NaN NaN NaN NaN NaN NaN NaN 29.679 1 29.679 29.179 30.179 0 0 0 0 0.40738 1 4733 4733 0.79363 0 1 47546 33228 29987 30001 54920 54920 -0.08904118799500793 VGIDLGTTY 9 Unmodified _VGIDLGTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MSMS UPN46_class_I_Rep_3 1 469.74530029296875 2 469.745108 937.475663 NaN NaN NaN NaN NaN NaN NaN 66.106 1 66.106 65.606 66.606 0 0 0 0 0.066339 1 14981 14981 32.305 5.4218 1 47547 1917 29988 30002 54921 54921 0.00442372423674442 VGIDLGTTY 9 Unmodified _VGIDLGTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENSG00000044574|ENST00000324460|HSPA5;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MSMS UPN46_class_I_Rep_3 1 469.7452087402344 2 469.745108 937.475663 NaN NaN NaN NaN NaN NaN NaN 66.267 1 66.267 65.767 66.767 0 0 0 0 0.026253 1 15026 15026 49.933 11.959 1 47548 1917 29988 30002 54922 54922 0.00442372423674442 VGIGNLQRT 9 Unmodified _VGIGNLQRT_ 0 0 0 PKP4|p.L1053*|1|0.05|ENSG00000144283|chr2:158676768-158676768|T/-|frameshift_variant;nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4 PKP4|p.L1053*|1|0.05|ENSG00000144283|chr2:158676768-158676768|T/-|frameshift_variant PKP4|p.L1053*|1|0.05|ENSG00000144283|chr2:158676768-158676768|T/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 479.27734375 2 479.277441 956.540328 0.24321 0.00011657 -0.094801 -4.5436E-05 0.14841 7.1129E-05 479.27729385878115 78.546 0.99577 78.546 78.108 79.104 0 211 106 3 0 0 0 0.47197 1 18337 18337 3.5965 0 1 772180 47549 3348 29989 30003 54923 54923 0.06031992020314192 VGIGNLQRT 9 Unmodified _VGIGNLQRT_ 0 0 0 PKP4|p.L1053*|1|0.05|ENSG00000144283|chr2:158676768-158676768|T/-|frameshift_variant;nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4 PKP4|p.L1053*|1|0.05|ENSG00000144283|chr2:158676768-158676768|T/-|frameshift_variant PKP4|p.L1053*|1|0.05|ENSG00000144283|chr2:158676768-158676768|T/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 479.2783508300781 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.47197 2 18445 18445;18596 3.5965 0 1 542900 47550 3348 29989 30003 54924;54925 54924 0.06031992020314192 VGIGVNVVYKS 11 Unmodified _VGIGVNVVYKS_ 0 0 0 REV__L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|161|2|anti-sense REV__L1HS_dup246|chr3:11488673-11492490:-|6.045710624214239|0.1217223661246818|5.63|151.0|161|2|anti-sense MSMS UPN48_class_I_Rep_1 5 567.8291625976562 2 567.829506 1133.64446 NaN NaN NaN NaN NaN NaN NaN 86.131 1 89.744 89.244 90.244 3.613 0 0 0 0.38417 1 20630 20630 1.1933 0.50296 1 + 47551 24006 29990 30004 54926 54926 0.08298274057187882 VGIKHWIC 8 Unmodified _VGIKHWIC_ 0 0 0 REV__L1ME2z_dup3637|chr9:131449634-131450267:-|1.6863041398011571|0.1046239098374156|4.01|151.0|24|1|anti-sense REV__L1ME2z_dup3637|chr9:131449634-131450267:-|1.6863041398011571|0.1046239098374156|4.01|151.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 477.8246765136719 2 478.262748 954.510943 NaN NaN NaN NaN NaN NaN NaN 99.457 1 99.457 98.957 99.957 0 0 0 0 0.40746 1 24229 24229 0.69038 0 1 + 47552 27921 29991 30005 54927 54927 0.03186756470472574 VGIMIALIFF 10 Unmodified _VGIMIALIFF_ 0 0 0 REV__L1MD1_dup3176|chr8:38221457-38221815:-|1.2279774679684723|0.2794538003878999|2.14|151.0|23|3|anti-sense REV__L1MD1_dup3176|chr8:38221457-38221815:-|1.2279774679684723|0.2794538003878999|2.14|151.0|23|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3338012695312 2 562.332839 1122.65112 0.43383 0.00024396 2.9686 0.0016693 3.4024 0.0019133 562.3344267885942 41.433 0.026466 41.433 41.414 41.441 0 4 2 2 0 0 0 0.56281 1 8124 8124 1.8442 0 1 1194500 + 47553 27318 29992 30006 54928 54928 0.09470495684195157 VGIPLIRERW 10 Unmodified _VGIPLIRERW_ 0 0 0 REV__ENST00000585505.1_1_17:41345458-41345563:+|nuORF REV__ENST00000585505.1_1_17:41345458-41345563:+|nuORF MSMS UPN46_class_I_Rep_3 1 619.8710327148438 2 619.87204 1237.72953 NaN NaN NaN NaN NaN NaN NaN 97.21 1 97.21 96.71 97.71 0 0 0 0 0.53105 1 23649 23649 0.45834 0 1 + 47554 23139 29993 30007 54929 54929 0.1201706431365892 VGIQCCKLSSY 11 Unmodified _VGIQCCKLSSY_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|227|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|227|2|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|227|2|anti-sense MSMS UPN47_class_I_Rep_3 4 600.7911376953125 2 600.791209 1199.56787 NaN NaN NaN NaN NaN NaN NaN 49.291 1 52.525 52.025 53.025 3.2345 0 0 0 0.38417 1 10791 10791 2.9952 0 1 47555 15354 29994 30008 54930 54930 -0.023936088259688404 VGISKKSL 8 Unmodified _VGISKKSL_ 0 0 0 L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|77|1|anti-sense L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|77|1|anti-sense L1MC2_dup5172|chr15:64305728-64307336:+|1.006514844148929|0.0047677444762919|7.72|151.0|77|1|anti-sense MSMS UPN47_class_I_Rep_2 3 416.268310546875 2 416.268553 830.522553 NaN NaN NaN NaN NaN NaN NaN 29.599 1 33.092 32.592 33.592 3.4923 0 0 0 0.40604 1 4763 4763 2.5775 0 1 47556 11272 29995 30009 54931 54931 0.10051276765477724 VGISRYRITLS 11 Unmodified _VGISRYRITLS_ 0 0 0 L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|233|3|anti-sense L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|233|3|anti-sense L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|233|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 421.91534423828125 3 422.250583 1263.72992 0.040297 1.7016E-05 -2.7275 -0.0011517 -2.6872 -0.0011347 422.2491194316674 38.54 0.22873 42.256 42.154 42.383 3.7164 35 23 2 0 0 0 22.551 1 6733 6733 1.2148 0.4383 1 103550 47557 13786 29996 30010 54932 54932 0.10860439242833309 VGITPRSL 8 Unmodified _VGITPRSL_ 0 0 0 REV__HAL1b_dup4024|chr13:21144713-21144881:+|1.047722532286527|0.0606073617619887|4.11|151.0|12|3|anti-sense REV__HAL1b_dup4024|chr13:21144713-21144881:+|1.047722532286527|0.0606073617619887|4.11|151.0|12|3|anti-sense MSMS UPN46_class_I_Rep_3 1 421.757568359375 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 20.825 1 20.825 20.325 21.325 0 0 0 0 0.40604 1 2231 2231 2.5775 0 1 + 47558 23456 29997 30011 54933 54933 0.07506106105654453 VGIVDIFLGF 10 Unmodified _VGIVDIFLGF_ 0 0 0 nc|ENSG00000090020|P19634-2|SLC9A1;ENSG00000090020|ENST00000263980|SLC9A1 nc|ENSG00000090020|P19634-2|SLC9A1 nc|ENSG00000090020|P19634-2|SLC9A1 MSMS UPN46_class_I_Rep_3 1 540.3104248046875 2 540.310418 1078.60628 NaN NaN NaN NaN NaN NaN NaN 106.78 1 106.78 106.28 107.28 0 0 0 0 0.53105 1 26043 26043 1.6526 0 1 47559 1342 29998 30012 54934 54934 0.07012388142516102 VGIVGKYGTRY 11 Unmodified _VGIVGKYGTRY_ 0 0 0 ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000487233.1_1_2:217363570-217364184:+|nuORF ENST00000487233.1_1_2:217363570-217364184:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 404.8958435058594 3 404.896029 1211.66626 -0.44932 -0.00018193 0.23806 9.6391E-05 -0.21126 -8.5537E-05 404.89604147553166 36.023 0.87811 39.699 39.359 40.237 3.6762 118 62 3 0 0 0 0.49635 2 6650 6607;6650 7.846 1.2065 1 169850 47560 5391 29999 30013 54935;54936 54936 0.06889078805738791 VGIYFQFRW 9 Unmodified _VGIYFQFRW_ 0 0 0 L1MB8_dup1243|chr2:28756882-28757462:-|3.21225230758688|0.0980504550698968|5.03|151.0|26|1|anti-sense L1MB8_dup1243|chr2:28756882-28757462:-|3.21225230758688|0.0980504550698968|5.03|151.0|26|1|anti-sense L1MB8_dup1243|chr2:28756882-28757462:-|3.21225230758688|0.0980504550698968|5.03|151.0|26|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 405.2997741699219 3 405.881831 1214.62366 -0.016672 -6.767E-06 0.88425 0.0003589 0.86758 0.00035213 405.88194753097605 22.885 0.13275 26.636 26.54 26.673 3.7507 17 13 2 0 0 0 0.12516 1 2413 2413 1.0715 0.29493 1 27744 47561 10928 30000 30014 54937 54937 0.024937284681755045 VGKELLLP 8 Unmodified _VGKELLLP_ 0 0 0 REV__ENST00000341259.6_1_12:111886343-111886586:+|nuORF REV__ENST00000341259.6_1_12:111886343-111886586:+|nuORF MSMS UPN46_class_I_Rep_3 1 434.77996826171875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 51.92 1 51.92 51.42 52.42 0 0 0 0 0.40738 1 11068 11068 0.79363 0 1 + 47562 21824 30001 30015 54938 54938 0.10388447425293634 VGKELLLP 8 Unmodified _VGKELLLP_ 0 0 0 REV__ENST00000341259.6_1_12:111886343-111886586:+|nuORF REV__ENST00000341259.6_1_12:111886343-111886586:+|nuORF MSMS UPN48_class_I_Rep_2 6 434.7799377441406 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 35.043 1 38.716 38.216 39.216 3.6735 0 0 0 0.40738 1 5725 5725 0.79363 0 1 + 47563 21824 30001 30015 54939 54939 0.10388447425293634 VGKGKSGPIR 10 Unmodified _VGKGKSGPIR_ 0 0 0 REV__L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|54|2|anti-sense REV__L1ME1_dup20136|chr10:102340681-102341730:+|1.615861495313256|0.0362891604468842|5.48|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 499.80841064453125 2 499.808908 997.603263 -0.40537 -0.00020261 0.40387 0.00020186 -0.0015022 -7.5082E-07 499.80903014424354 29.405 0.48383 32.728 32.676 33.16 3.3235 52 42 2 0 0 0 0.56333 1 4778 4778 1.4819 0 1 52420 + 47564 27656 30002 30016 54940 54940 0.10436557808361613 VGKHHTLR 8 Unmodified _VGKHHTLR_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MSMS UPN46_class_I_Rep_3 1 474.2820739746094 2 474.280318 946.546083 NaN NaN NaN NaN NaN NaN NaN 37.601 1 37.601 37.101 38.101 0 0 0 0 0.4044 1 7086 7086 4.756 0 1 + 47565 20185 30003 30017 54941 54941 0.07067135322654394 VGKKDEYFA 9 Unmodified _VGKKDEYFA_ 0 0 0 REV__ENSG00000257093|ENST00000536163|DENND11 REV__ENSG00000257093|ENST00000536163|DENND11 MSMS UPN48_class_I_Rep_2 6 528.76953125 2 528.771657 1055.52876 NaN NaN NaN NaN NaN NaN NaN 30.249 1 33.884 33.384 34.384 3.6351 0 0 0 0.39518 1 4399 4399 1.8442 0 1 + 47566 21385 30004 30018 54942 54942 0.00321750206330762 VGKKKKDVIL 10 Unmodified _VGKKKKDVIL_ 0 0 0 ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B MULTI-MSMS UPN47_class_I_Rep_1 2 564.379150390625 2 564.379166 1126.74378 0.50087 0.00028268 0.11172 6.3052E-05 0.61258 0.00034573 564.3790126210292 108.24 0.63995 111.87 111.52 112.16 3.6355 153 56 4 0 0 0 0.54466 1 26512 26512 6.2058 0.47393 1 7582000 47567 1885 30005 30019 54943 54943 0.18547716741932163 VGKKKKDVIL 10 Unmodified _VGKKKKDVIL_ 0 0 0 ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B MULTI-MSMS UPN47_class_I_Rep_2 3 564.37939453125 2 564.379166 1126.74378 0.63479 0.00035826 -0.20821 -0.00011751 0.42658 0.00024075 564.3789587193039 108.08 0.2934 111.62 111.37 111.66 3.5333 63 34 2 0 0 0 0.56309 1 26133 26133 1.6526 0.17072 1 10385000 47568 1885 30005 30019 54944 54944 0.18547716741932163 VGKKKKDVIL 10 Unmodified _VGKKKKDVIL_ 0 0 0 ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B ENSG00000109016|ENST00000395511|DHRS7B MULTI-MSMS UPN47_class_I_Rep_2 3 564.37939453125 2 564.379166 1126.74378 0.63501 0.00035839 0.1978 0.00011163 0.83281 0.00047002 564.3790304075768 108.19 0.64293 111.73 111.42 112.07 3.5333 147 69 4 0 0 0 0.56309 1 26303 26303 1.6526 1.1943 1 10066000 47569 1885 30005 30019 54945 54945 0.18547716741932163 VGKKKKKAKSQ 11 Unmodified _VGKKKKKAKSQ_ 0 0 0 REV__nc|ENSG00000104131|O75822-2|EIF3J REV__nc|ENSG00000104131|O75822-2|EIF3J MSMS UPN47_class_I_Rep_2 3 615.40478515625 2 615.406247 1228.79794 NaN NaN NaN NaN NaN NaN NaN 67.976 1 71.246 70.746 71.746 3.2696 0 0 0 0.38417 1 16423 16423 1.1933 0 1 + 47570 18248 30006 30020 54946 54946 0.19269308893490233 VGKNKKVP 8 Unmodified _VGKNKKVP_ 0 0 0 REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7797546386719 2 435.281995 868.549437 0.1017 4.4268E-05 -0.90363 -0.00039333 -0.80193 -0.00034907 435.2816475195621 48.264 0.14678 48.264 48.139 48.285 0 19 14 2 0 0 0 0.72333 1 10045 10045 2.5775 0 1 81447 + 47571 26403 30007 30021 54947 54947 0.10990385376658196 VGKNKKVP 8 Unmodified _VGKNKKVP_ 0 0 0 REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7799987792969 2 435.281995 868.549437 0.077762 3.3848E-05 -1.0077 -0.00043864 -0.92996 -0.0004048 435.281515773806 53.006 0.17771 53.006 52.921 53.098 0 26 17 2 0 0 0 0.72333 1 11381 11381 0.69038 0 1 121830 + 47572 26403 30007 30021 54948 54948 0.10990385376658196 VGKNKKVP 8 Unmodified _VGKNKKVP_ 0 0 0 REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 435.28216552734375 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 53.088 1 56.616 56.116 57.116 3.5278 0 0 0 0.40746 1 11865 11865 0.69038 0 1 + 47573 26403 30007 30021 54949 54949 0.10990385376658196 VGKNKKVP 8 Unmodified _VGKNKKVP_ 0 0 0 REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense REV__L1MB8_dup3073|chr3:114805601-114808245:-|1.0109981826141132|0.0206013444632731|5.62|151.0|10|1|sense MSMS UPN47_class_I_Rep_1 2 435.2814025878906 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 53.644 1 57.172 56.672 57.672 3.5278 0 0 0 0.40746 1 12035 12035 0.69038 0 1 + 47574 26403 30007 30021 54950 54950 0.10990385376658196 VGKRLILN 8 Unmodified _VGKRLILN_ 0 0 0 REV__ENSG00000148803|ENST00000278025|FUOM REV__ENSG00000148803|ENST00000278025|FUOM MSMS UPN47_class_I_Rep_2 3 456.8029479980469 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 42.898 1 46.259 45.759 46.759 3.3611 0 0 0 0.40746 1 8794 8794 0.69038 0 1 + 47575 19599 30008 30022 54951 54951 0.1323036078504174 VGKRSAGYY 9 Unmodified _VGKRSAGYY_ 0 0 0 L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|145|3|sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|145|3|sense L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|145|3|sense MSMS UPN47_class_I_Rep_1 2 500.7525939941406 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 61.964 1 65.332 64.832 65.832 3.3681 0 0 0 0.24828 1 14565 14565 13.508 4.1604 1 47576 14221 30009 30023 54952 54952 0.01400303128991709 VGKRTVPL 8 Unmodified _VGKRTVPL_ 0 0 0 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 MSMS UPN47_class_I_Rep_1 2 435.2818603515625 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 53.247 1 56.775 56.275 57.275 3.5278 0 0 0 0.40625 1 11914 11914 2.3027 0 1 47577 5076 30010 30024 54953 54953 0.10990385376646827 VGKRTVPL 8 Unmodified _VGKRTVPL_ 0 0 0 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 MULTI-SECPEP UPN47_class_I_Rep_2 3 434.780029296875 2 435.281995 868.549437 -0.76452 -0.00033278 -0.23012 -0.00010017 -0.99464 -0.00043295 435.2819024128912 36.48 0.13869 39.891 39.833 39.972 3.4114 15 10 2 0 0 0 0.72333 1 6862 6862 2.3027 0 1 73198 47578 5076 30010 30024 54954 54954 0.10990385376646827 VGKRTVPL 8 Unmodified _VGKRTVPL_ 0 0 0 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 ENSG00000184984|ENST00000383263|CHRM5 MSMS UPN48_class_I_Rep_3 7 435.25836181640625 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 58.062 1 61.594 61.094 62.094 3.5317 0 0 0 0.40625 1 12548 12548 2.3027 0 1 47579 5076 30010 30024 54955 54955 0.10990385376646827 VGKTGYPY 8 Unmodified _VGKTGYPY_ 0 0 0 L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense;L1MA7_dup350|chr1:175981421-175982323:+|1.9420811833955165|0.0432913482991628|5.49|151.0|1|1|sense;L1MA7_dup6663|chr13:36955737-36956648:+|1.0201195943327137|0.3074944821797896|1.73|150.0|1|1|sense;L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|186|3|sense;L1PA7_dup1151|chr2:66485103-66487163:-|1.842734170497374|0.0759779657544799|4.6|128.0|8|1|sense;L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|32|3|sense;L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|14|1|sense L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN46_class_I_Rep_3 1 442.7292785644531 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 103.85 1 103.85 103.35 104.35 0 0 0 0 0.39996 1 25343 25343 7.9102 0 1 47580 9388 30011 30025 54956 54956 -0.002415755396327768 VGKTGYPY 8 Unmodified _VGKTGYPY_ 0 0 0 L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense;L1MA7_dup350|chr1:175981421-175982323:+|1.9420811833955165|0.0432913482991628|5.49|151.0|1|1|sense;L1MA7_dup6663|chr13:36955737-36956648:+|1.0201195943327137|0.3074944821797896|1.73|150.0|1|1|sense;L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|186|3|sense;L1PA7_dup1151|chr2:66485103-66487163:-|1.842734170497374|0.0759779657544799|4.6|128.0|8|1|sense;L1MA3_dup8193|chr17:82996546-82997925:+|1.8979591662219495|0.0155320100368146|6.93|151.0|32|3|sense;L1MA3_dup1311|chr3:10067817-10069462:+|2.5153051171435905|0.0332461348215122|6.24|151.0|14|1|sense L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN48_class_I_Rep_2 6 442.7293395996094 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 99.466 1 103.22 102.72 103.72 3.7575 0 0 0 0.39996 1 23618 23618 7.9102 0 1 47581 9388 30011 30025 54957 54957 -0.002415755396327768 VGLADPPY 8 Unmodified _VGLADPPY_ 0 0 0 REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|150|2|anti-sense REV__HERV17-int_dup822|chr17:37332949-37336355:+|1.228022336775579|0.0889398436161681|3.79|151.0|150|2|anti-sense MSMS UPN46_class_I_Rep_3 1 416.22802734375 2 416.215986 830.417419 NaN NaN NaN NaN NaN NaN NaN 32.77 1 32.77 32.27 33.27 0 0 0 0 0.40581 1 5649 5649 2.8892 0 1 + 47582 23561 30012 30026 54958 54958 -0.0045726443096327785 VGLARFGL 8 Unmodified _VGLARFGL_ 0 0 0 Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|27|3|anti-sense Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|27|3|anti-sense Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|27|3|anti-sense MSMS UPN46_class_I_Rep_3 1 416.7560119628906 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 26.703 1 26.703 26.203 27.203 0 0 0 0 0.40738 1 3858 3858 0.79363 0 1 47583 8466 30013 30027 54959 54959 0.07418427313859866 VGLARFGL 8 Unmodified _VGLARFGL_ 0 0 0 Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|27|3|anti-sense Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|27|3|anti-sense Kanga1b_dup284|chr12:123205766-123206166:+|1.6222586077237178|0.0623078764060675|4.7|151.0|27|3|anti-sense MSMS UPN46_class_I_Rep_3 1 416.75616455078125 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 32.621 1 32.621 32.121 33.121 0 0 0 0 0.40738 1 5605 5605 0.79363 0 1 47584 8466 30013 30027 54960 54960 0.07418427313859866 VGLCPFRL 8 Unmodified _VGLCPFRL_ 0 0 0 REV__L1M2_dup7126|chr12:76493308-76494331:-|1.227026890096389|0.0241071108297853|5.67|151.0|48|1|anti-sense REV__L1M2_dup7126|chr12:76493308-76494331:-|1.227026890096389|0.0241071108297853|5.67|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_1 5 452.7568359375 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 18.825 1 22.357 21.857 22.857 3.5313 0 0 0 0.40738 1 1328 1328 0.79363 0 1 + 47585 24227 30014 30028 54961 54961 0.04443354096190433 VGLEWWWEN 9 Unmodified _VGLEWWWEN_ 0 0 0 ENST00000511915.1_1_12:112130513-112130759:+|nuORF ENST00000511915.1_1_12:112130513-112130759:+|nuORF ENST00000511915.1_1_12:112130513-112130759:+|nuORF MSMS UPN46_class_I_Rep_3 1 406.870361328125 3 406.857463 1217.55056 NaN NaN NaN NaN NaN NaN NaN 23.589 1 23.589 23.089 24.089 0 0 0 0 0.39841 1 2983 2983 1.0715 0.29493 1 47586 7190 30015 30029 54962 54962 -0.049514450450942604 VGLFQPLLIG 10 Unmodified _VGLFQPLLIG_ 0 0 0 REV__ENSG00000099282|ENST00000373290|TSPAN15 REV__ENSG00000099282|ENST00000373290|TSPAN15 MSMS UPN47_class_I_Rep_3 4 528.8263549804688 2 528.826235 1055.63792 NaN NaN NaN NaN NaN NaN NaN 97.846 1 101.27 100.77 101.77 3.4216 0 0 0 0.53105 1 24242 24242 6.7232 0 1 + 47587 18065 30016 30030 54963 54963 0.11232380896467475 VGLGDQRS 8 Unmodified _VGLGDQRS_ 0 0 0 LTR5B_dup305|chr16:29740241-29741225:+|1.6235151210654082|0.0292816495605788|5.79|151.0|42|2|anti-sense LTR5B_dup305|chr16:29740241-29741225:+|1.6235151210654082|0.0292816495605788|5.79|151.0|42|2|anti-sense LTR5B_dup305|chr16:29740241-29741225:+|1.6235151210654082|0.0292816495605788|5.79|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 416.2276916503906 2 416.219591 830.42463 NaN NaN NaN NaN NaN NaN NaN 35.413 1 39.085 38.585 39.585 3.6721 0 0 0 0.40738 1 5738 5738 0.79363 0 1 47588 15687 30017 30031 54964 54964 0.002634681694871688 VGLGIHTL 8 Unmodified _VGLGIHTL_ 0 0 0 REV__ENSG00000171944|ENST00000307388|OR52A5 REV__ENSG00000171944|ENST00000307388|OR52A5 MSMS UPN47_class_I_Rep_2 3 405.2481384277344 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 84.222 1 87.645 87.145 88.145 3.4232 0 0 0 0.40604 1 21006 21006 2.5775 0 1 + 47589 20429 30018 30032 54965 54965 0.06878721076941474 VGLGIHTL 8 Unmodified _VGLGIHTL_ 0 0 0 REV__ENSG00000171944|ENST00000307388|OR52A5 REV__ENSG00000171944|ENST00000307388|OR52A5 MSMS UPN48_class_I_Rep_1 5 405.2735900878906 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 82.874 1 86.461 85.961 86.961 3.5871 0 0 0 0.40604 1 19805 19805 2.5775 0 1 + 47590 20429 30018 30032 54966 54966 0.06878721076941474 VGLGIHTL 8 Unmodified _VGLGIHTL_ 0 0 0 REV__ENSG00000171944|ENST00000307388|OR52A5 REV__ENSG00000171944|ENST00000307388|OR52A5 MSMS UPN48_class_I_Rep_1 5 405.2482604980469 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 84.075 1 87.672 87.172 88.172 3.5973 0 0 0 0.40604 1 20123 20123 2.5775 0 1 + 47591 20429 30018 30032 54967 54967 0.06878721076941474 VGLGIHTL 8 Unmodified _VGLGIHTL_ 0 0 0 REV__ENSG00000171944|ENST00000307388|OR52A5 REV__ENSG00000171944|ENST00000307388|OR52A5 MSMS UPN48_class_I_Rep_3 7 405.2485046386719 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 84.036 1 87.764 87.264 88.264 3.7281 0 0 0 0.40604 1 19937 19937 2.5775 0 1 + 47592 20429 30018 30032 54968 54968 0.06878721076941474 VGLGPALEF 9 Unmodified _VGLGPALEF_ 0 0 0 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MSMS UPN48_class_I_Rep_1 5 451.7527770996094 2 451.752736 901.490919 NaN NaN NaN NaN NaN NaN NaN 76.866 1 80.376 79.876 80.876 3.5102 0 0 0 0.1074 1 18269 18269 23.148 6.2061 1 47593 3149 30019 30033 54969 54969 0.03623284011530359 VGLGRHVN 8 Unmodified _VGLGRHVN_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 426.2460021972656 2 426.245944 850.477334 0.10706 4.5635E-05 0.06134 2.6146E-05 0.1684 7.1781E-05 426.2459587693193 81.81 0.88867 81.81 81.383 82.272 0 198 85 3 0 0 0 0.82752 1 19399 19399 2.5775 0 1 3196000 + 47594 19042 30020 30034 54970 54970 0.0461147102294035 VGLGRHVN 8 Unmodified _VGLGRHVN_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 426.2458801269531 2 426.245944 850.477334 0.026633 1.1352E-05 -0.044472 -1.8956E-05 -0.017839 -7.6039E-06 426.24590139260204 78.523 0.80992 81.968 81.613 82.423 3.4456 187 79 3 0 0 0 0.82752 3 19478 19478;19551;19589 5.2307 0 1 836500 + 47595 19042 30020 30034 54971;54972;54973 54971 0.0461147102294035 VGLGRHVN 8 Unmodified _VGLGRHVN_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron MULTI-MSMS UPN48_class_I_Rep_1 5 426.2459411621094 2 426.245944 850.477334 -0.069498 -2.9623E-05 0.092026 3.9226E-05 0.022528 9.6025E-06 426.24597397372406 78.406 0.87312 81.941 81.548 82.421 3.5352 218 107 4 0 0 0 0.82752 1 18658 18658 2.5775 0 1 748790 + 47596 19042 30020 30034 54974 54974 0.0461147102294035 VGLGRHVN 8 Unmodified _VGLGRHVN_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron MULTI-MSMS UPN48_class_I_Rep_2 6 426.2460021972656 2 426.245944 850.477334 0.077215 3.2912E-05 -0.0011648 -4.9647E-07 0.07605 3.2416E-05 426.24592223851135 78.227 0.77901 81.85 81.533 82.312 3.6222 216 91 3 0 0 0 0.82752 2 18538 18538;18566 5.2307 0 1 799010 + 47597 19042 30020 30034 54975;54976 54975 0.0461147102294035 VGLGRHVN 8 Unmodified _VGLGRHVN_ 0 0 0 REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron REV__ENSG00000132953.16,XPO4,chr13,-,I4.1,20855766,20862716|30|5.99|3|intron MULTI-MSMS UPN48_class_I_Rep_3 7 426.2458801269531 2 426.245944 850.477334 0.16102 6.8632E-05 -0.11172 -4.762E-05 0.049296 2.1012E-05 426.2458741817482 78.249 0.80693 81.87 81.514 82.321 3.6216 218 97 3 0 0 0 0.82752 2 18498 18498;18529 2.5775 0 1 943270 + 47598 19042 30020 30034 54977;54978 54977 0.0461147102294035 VGLIRNLAL 9 Unmodified _VGLIRNLAL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_1 2 484.8160400390625 2 484.816202 967.617851 0.15155 7.3474E-05 -0.096046 -4.6565E-05 0.055505 2.691E-05 484.8161048539288 61.428 1.3966 64.809 64.429 65.825 3.3815 169 101 2 0 0 0 0.0081951 5 14476 14322;14364;14403;14438;14476 71.134 29.039 1 870760 47599 4348 30021 30035 54979;54980;54981;54982;54983 54983 0.13274629956492845 VGLIRNLAL 9 Unmodified _VGLIRNLAL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_2 3 484.8161315917969 2 484.816202 967.617851 0.23677 0.00011479 -0.068249 -3.3088E-05 0.16853 8.1704E-05 484.8160491467087 61.836 1.472 65.096 64.552 66.024 3.2594 178 94 4 0 0 0 0.0081951 7 14589 14477;14517;14553;14589;14624;14672;14713 71.134 22.788 1 830440 47600 4348 30021 30035 54984;54985;54986;54987;54988;54989;54990 54987 0.13274629956492845 VGLIRNLAL 9 Unmodified _VGLIRNLAL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN47_class_I_Rep_3 4 484.8161926269531 2 484.816202 967.617851 0.089319 4.3303E-05 0.19636 9.5198E-05 0.28568 0.0001385 484.8161646362003 61.843 1.4186 65.01 64.609 66.028 3.1667 175 95 3 0 0 0 0.023254 7 14594 14549;14594;14635;14677;14719;14773;14827 61.357 19.263 1 785780 47601 4348 30021 30035 54991;54992;54993;54994;54995;54996;54997 54992 0.13274629956492845 VGLLFLKLLGK 11 Unmodified _VGLLFLKLLGK_ 0 0 0 ENSG00000129696|ENST00000431156|TTI2 ENSG00000129696|ENST00000431156|TTI2 ENSG00000129696|ENST00000431156|TTI2 MSMS UPN46_class_I_Rep_3 1 600.9054565429688 2 600.907559 1199.80057 NaN NaN NaN NaN NaN NaN NaN 104.94 1 104.94 104.44 105.44 0 0 0 0 0.38417 1 25606 25606 0.35063 0 1 47602 2631 30022 30036 54998 54998 0.20865764298446265 VGLLKIIG 8 Unmodified _VGLLKIIG_ 0 0 0 REV__L1MC5a_dup5231|chr5:76923004-76923487:-|1.1444872003917648|0.0013140792953743|9.77|148.0|19|3|sense REV__L1MC5a_dup5231|chr5:76923004-76923487:-|1.1444872003917648|0.0013140792953743|9.77|148.0|19|3|sense MSMS UPN46_class_I_Rep_3 1 406.7851257324219 2 406.783839 811.553125 NaN NaN NaN NaN NaN NaN NaN 32.839 1 32.839 32.339 33.339 0 0 0 0 0.40738 1 5670 5670 0.79363 0 1 + 47603 27163 30023 30037 54999 54999 0.1398105515052066 VGLLNFQL 8 Unmodified _VGLLNFQL_ 0 0 0 REV__ENSG00000171298|ENST00000302262|GAA REV__ENSG00000171298|ENST00000302262|GAA MSMS UPN46_class_I_Rep_3 1 452.26922607421875 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 30.277 1 30.277 29.777 30.777 0 0 0 0 0.40364 1 4907 4907 5.7604 0 1 + 47604 20399 30024 30038 55000 55000 0.06739276765483737 VGLPDLTK 8 Unmodified _VGLPDLTK_ 0 0 0 HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|189|3|sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|189|3|sense HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|189|3|sense MSMS UPN46_class_I_Rep_3 1 421.75836181640625 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 25.446 1 25.446 24.946 25.946 0 0 0 0 0.40625 1 3491 3491 2.3027 0 1 47605 8027 30025 30039 55001 55001 0.06383284011519663 VGLPPVSTL 9 Unmodified _VGLPPVSTL_ 0 0 0 L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|59|3|anti-sense L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|59|3|anti-sense L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|59|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.76849365234375 2 441.768386 881.522219 0.14243 6.292E-05 0.60004 0.00026508 0.74247 0.000328 441.7685105340292 60.596 0.39451 64.07 63.82 64.215 3.4737 40 29 2 0 0 0 0.41259 1 13440 13440 7.2892 0 1 123240 47606 15317 30026 30040 55002 55002 0.07671857045625075 VGLPPVSTL 9 Unmodified _VGLPPVSTL_ 0 0 0 L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|59|3|anti-sense L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|59|3|anti-sense L1PB4_dup4914|chr10:31466922-31468036:+|1.664287597533157|0.09224346150066|4.17|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_2 6 441.7682800292969 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 60.643 1 64.122 63.622 64.622 3.4785 0 0 0 0.35339 1 13409 13409 7.9102 0 1 47607 15317 30026 30040 55003 55003 0.07671857045625075 VGLPQAQR 8 Unmodified _VGLPQAQR_ 0 0 0 REV__ENST00000607283.5_1_3:53077257-53126395:-|nuORF REV__ENST00000607283.5_1_3:53077257-53126395:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7802734375 2 434.753601 867.49265 0.055539 2.4146E-05 2.383 0.001036 2.4385 0.0010602 434.75658642642753 37.695 0.31146 37.695 37.555 37.866 0 37 27 2 0 0 0 0.72333 1 7132 7132 2.3027 0.24298 1 89922 + 47608 23235 30027 30041 55004 55004 0.053603378201387386 VGLPQNSYFE 10 Unmodified _VGLPQNSYFE_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 577.2797241210938 2 577.279846 1152.54514 0.44246 0.00025542 0.12357 7.1334E-05 0.56603 0.00032676 577.2796293811812 73.708 0.78574 77.013 76.709 77.494 3.3048 161 77 3 0 0 0 0.48573 1 18115 18115 13.042 0 1 391320 47609 8564 30028 30042 55005 55005 -0.025031686275724496 VGLPQNSYFE 10 Unmodified _VGLPQNSYFE_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 577.279846 1152.54514 0.36489 0.00021064 0.276 0.00015933 0.64089 0.00036997 577.2797338664304 73.477 0.87937 76.863 76.601 77.48 3.3861 -0.087579 4.6154E-05 NaN 13.042 158 82 3 NaN NaN NaN NaN 0 NaN NaN 0 327250 47610 8564 30028 30042 -0.025031686275724496 VGLPQNSYFE 10 Unmodified _VGLPQNSYFE_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 577.279846 1152.54514 0.44246 0.00025542 0.12357 7.1334E-05 0.56603 0.00032676 577.2796293811812 73.708 0.78574 77.013 76.709 77.494 3.3048 0.062744 -0.00012983 NaN 13.042 161 77 3 NaN NaN NaN NaN 0 NaN NaN 0 391320 47611 8564 30028 30042 -0.025031686275724496 VGLPQNSYFE 10 Unmodified _VGLPQNSYFE_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|102|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 577.279846 1152.54514 0.45581 0.00026313 0.25425 0.00014678 0.71006 0.0004099 577.2796977059983 73.739 0.80479 76.975 76.623 77.428 3.2363 0.024835 2.1051E-05 NaN 13.042 155 81 3 NaN NaN NaN NaN 0 NaN NaN 0 409530 47612 8564 30028 30042 -0.025031686275724496 VGLQQGVV 8 Unmodified _VGLQQGVV_ 0 0 0 ENST00000269095.8_2_17:41984902-41985106:-|nuORF ENST00000269095.8_2_17:41984902-41985106:-|nuORF ENST00000269095.8_2_17:41984902-41985106:-|nuORF MSMS UPN46_class_I_Rep_3 1 400.238037109375 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 25.949 1 25.949 25.449 26.449 0 0 0 0 0.40738 1 3638 3638 0.79363 0 1 47613 6008 30029 30043 55006 55006 0.05266130697293647 VGLQYLVNHAV 11 Unmodified _VGLQYLVNHAV_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|78|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|78|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|78|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 404.8958435058594 3 404.896029 1211.66626 -0.44932 -0.00018193 0.23806 9.6391E-05 -0.21126 -8.5537E-05 404.89604147553166 36.023 0.87811 39.699 39.359 40.237 3.6762 118 62 3 0 0 0 0.39875 2 6687 6687;6726 10.315 1.5635 1 169850 47614 33023 30030 30044 55007;55008 55007 0.06889078805738791 VGLQYLVNHAV 11 Unmodified _VGLQYLVNHAV_ 0 0 0 Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|78|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|78|3|anti-sense Tigger1_dup11871|chr21:39241673-39243066:+|1.30520318004675|0.0651072010953691|4.33|151.0|78|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 404.896029 1211.66626 -1.2083 -0.00048922 0.99547 0.00040306 -0.2128 -8.6163E-05 405.2309504578468 36.219 0.071564 39.473 39.416 39.488 3.2547 -0.11277 0.00089963 NaN 10.315 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 16875 47615 33023 30030 30044 0.06889078805738791 VGLRRDPNA 9 Unmodified _VGLRRDPNA_ 0 0 0 ENST00000526038.1_1_9:100136781-100138195:+|nuORF ENST00000526038.1_1_9:100136781-100138195:+|nuORF ENST00000526038.1_1_9:100136781-100138195:+|nuORF MSMS UPN46_class_I_Rep_3 1 499.2837829589844 2 499.280515 996.546476 NaN NaN NaN NaN NaN NaN NaN 91.026 1 91.026 90.526 91.526 0 0 0 0 0.39428 1 21966 21966 2.0598 1.2661 1 47616 7259 30031 30045 55009 55009 0.048065102518421554 VGLSPEPI 8 Unmodified _VGLSPEPI_ 0 0 0 ENST00000590627.5_1_19:13002616-13004571:+|nuORF;ENST00000587832.5_1_19:13002118-13004571:+|nuORF ENST00000590627.5_1_19:13002616-13004571:+|nuORF ENST00000590627.5_1_19:13002616-13004571:+|nuORF MSMS UPN48_class_I_Rep_1 5 406.231689453125 2 406.231636 810.448719 NaN NaN NaN NaN NaN NaN NaN 36.867 1 40.374 39.874 40.874 3.507 0 0 0 0.40604 1 6203 6203 2.5775 0 1 47617 7592 30032 30046 55010 55010 0.03591308603131438 VGLVLALPV 9 Unmodified _VGLVLALPV_ 0 0 0 ENST00000300952.6_1_19:1258292-1258616:+|nuORF ENST00000300952.6_1_19:1258292-1258616:+|nuORF ENST00000300952.6_1_19:1258292-1258616:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 440.7991027832031 2 440.796946 879.57934 -0.39067 -0.00017221 2.851 0.0012567 2.4603 0.0010845 440.7992832091479 34.117 0.45577 37.803 37.507 37.963 3.6859 55 33 2 0 0 0 0.50015 1 6123 6123 0.6015 0 1 134620 47618 6071 30033 30047 55011 55011 0.1347332432200119 VGLVLALPV 9 Unmodified _VGLVLALPV_ 0 0 0 ENST00000300952.6_1_19:1258292-1258616:+|nuORF ENST00000300952.6_1_19:1258292-1258616:+|nuORF ENST00000300952.6_1_19:1258292-1258616:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 441.29742431640625 2 440.796946 879.57934 0.025064 1.1048E-05 2.3484 0.0010352 2.3734 0.0010462 440.7994219162639 33.623 0.64498 37.143 36.769 37.414 3.5201 97 67 2 0 0 0 0.50015 1 5242 5242 0.6015 0 1 99392 47619 6071 30033 30047 55012 55012 0.1347332432200119 VGLWDRAGRE 10 Unmodified _VGLWDRAGRE_ 0 0 0 HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|136|2|anti-sense HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|136|2|anti-sense HERVIP10B3-int_dup47|chr3:120042328-120045238:+|1.107982605396676|0.0300849700143944|5.2|151.0|136|2|anti-sense MSMS UPN48_class_I_Rep_3 7 579.8064575195312 2 579.804354 1157.59415 NaN NaN NaN NaN NaN NaN NaN 41.438 1 45.084 44.584 45.584 3.6458 0 0 0 0.53105 1 7484 7484 2.7352 0 1 47620 8191 30034 30048 55013 55013 0.021661644520463597 VGMFCKLY 8 Unmodified _VGMFCKLY_ 0 0 0 L1MC5_dup10029|chr11:43462680-43462918:+|1.0903001404393804|0.0177314044387531|5.94|151.0|1|1|sense L1MC5_dup10029|chr11:43462680-43462918:+|1.0903001404393804|0.0177314044387531|5.94|151.0|1|1|sense L1MC5_dup10029|chr11:43462680-43462918:+|1.0903001404393804|0.0177314044387531|5.94|151.0|1|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 480.2690734863281 2 480.737717 959.460881 0.20981 0.00010086 -3.1694 -0.0015236 -2.9596 -0.0014228 480.7359230587344 66.209 0.061081 66.209 66.18 66.241 0 7 5 2 0 0 0 0.72333 1 15018 15018 4.756 0.81161 1 38814 47621 11645 30035 30049 55014 55014 -0.020471142496830907 VGMMKHPNWT 10 Unmodified _VGMMKHPNWT_ 0 0 0 REV__ENST00000478562.1_1_2:171709188-171709395:+|nuORF REV__ENST00000478562.1_1_2:171709188-171709395:+|nuORF MSMS UPN46_class_I_Rep_3 1 400.85919189453125 3 400.859933 1199.55797 NaN NaN NaN NaN NaN NaN NaN 14.792 1 14.792 14.292 15.292 0 0 0 0 0.53105 1 721 721 1.9064 1.2087 1 + 47622 18904 30036 30050 55015 55015 -0.03382752040693049 VGNKALADI 9 Unmodified _VGNKALADI_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MSMS UPN47_class_I_Rep_2 3 450.7723693847656 2 450.761092 899.507631 NaN NaN NaN NaN NaN NaN NaN 116.47 1 119.96 119.46 120.46 3.4965 0 0 0 0.4029 1 28435 28435 0 0 1 47623 1571 30037 30051 55016 55016 0.05385784897441681 VGPAAAKTK 9 Unmodified _VGPAAAKTK_ 0 0 0 REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF REV__ENST00000459969.5_1_2:10262865-10264033:+|nuORF MSMS UPN46_class_I_Rep_3 1 421.7583312988281 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 26.887 1 26.887 26.387 27.387 0 0 0 0 0.39518 1 3914 3914 1.8442 0 1 + 47624 20426 30038 30052 55017 55017 0.07506106105665822 VGPARVRG 8 Unmodified _VGPARVRG_ 0 0 0 REV__ENST00000334186.8_1_19:49653994-49654252:+|nuORF REV__ENST00000334186.8_1_19:49653994-49654252:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 406.87176513671875 2 406.248486 810.48242 -0.10602 -4.3072E-05 0.41705 0.00016943 0.31103 0.00012636 406.2484486685627 34.122 0.096878 34.122 34.055 34.151 0 7 5 2 0 0 0 0.72333 1 6055 6055 0.79363 0 1 131900 + 47625 21789 30039 30053 55018 55018 0.06959774885569914 VGPDKIQL 8 Unmodified _VGPDKIQL_ 0 0 0 REV__HERV3-int_dup285|chr19:53437338-53438199:-|1.3730609828951124|0.2978211622428273|2.2|151.0|23|3|sense REV__HERV3-int_dup285|chr19:53437338-53438199:-|1.3730609828951124|0.2978211622428273|2.2|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 435.24493408203125 2 435.258185 868.501818 NaN NaN NaN NaN NaN NaN NaN 14.966 1 18.332 17.832 18.832 3.3659 0 0 0 0.40738 1 673 673 0.79363 0 1 + 47626 23585 30040 30054 55019 55019 0.06230686385822537 VGPGRRGL 8 Unmodified _VGPGRRGL_ 0 0 0 ENST00000578387.1_1_4:184019140-184020019:-|nuORF ENST00000578387.1_1_4:184019140-184020019:-|nuORF ENST00000578387.1_1_4:184019140-184020019:-|nuORF MSMS UPN47_class_I_Rep_3 4 406.2485656738281 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 89.225 1 92.618 92.118 93.118 3.3931 0 0 0 0.40738 1 22371 22371 0.79363 0 1 47627 7544 30041 30055 55020 55020 0.06959774885569914 VGPGSVKVG 9 Unmodified _VGPGSVKVG_ 0 0 0 REV__nc|ENSG00000128591|Q14315-2|FLNC REV__nc|ENSG00000128591|Q14315-2|FLNC MSMS UPN46_class_I_Rep_3 1 400.2379455566406 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 31.216 1 31.216 30.716 31.716 0 0 0 0 0.39428 1 5186 5186 2.0598 0 1 + 47628 18901 30042 30056 55021 55021 0.05266130697293647 VGPHLHQP 8 Unmodified _VGPHLHQP_ 0 0 0 ENST00000284637.13_1_4:170190423-170192100:-|nuORF ENST00000284637.13_1_4:170190423-170192100:-|nuORF ENST00000284637.13_1_4:170190423-170192100:-|nuORF MSMS UPN46_class_I_Rep_3 1 442.7395324707031 2 442.740494 883.466435 NaN NaN NaN NaN NaN NaN NaN 57.273 1 57.273 56.773 57.773 0 0 0 0 0.40581 1 12538 12538 2.8892 0.31174 1 47629 6038 30043 30057 55022 55022 0.020040686486595405 VGPLIFLDR 9 Unmodified _VGPLIFLDR_ 0 0 0 ENST00000310842.8_1_7:76239320-76240795:-|nuORF;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3 ENST00000310842.8_1_7:76239320-76240795:-|nuORF ENST00000310842.8_1_7:76239320-76240795:-|nuORF MSMS UPN47_class_I_Rep_3 4 515.30615234375 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 14.444 1 17.814 17.314 18.314 3.3697 0 0 0 0.40038 1 550 550 0.6015 0 1 47630 5231 30044 30058 55023 55023 0.08870923719587154 VGPLPKSL 8 Unmodified _VGPLPKSL_ 0 0 0 CON__Q05443;ENSG00000139329|ENST00000266718|LUM CON__Q05443 CON__Q05443 MSMS UPN46_class_I_Rep_3 1 405.75750732421875 2 405.757821 809.501089 NaN NaN NaN NaN NaN NaN NaN 32.575 1 32.575 32.075 33.075 0 0 0 0 0.40581 1 5591 5591 2.8892 0 1 + 47631 642 30045 30059 55024 55024 0.08871891736748694 VGPLPLPIV 9 Unmodified _VGPLPLPIV_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MSMS UPN46_class_I_Rep_3 1 452.7969055175781 2 452.796946 903.57934 NaN NaN NaN NaN NaN NaN NaN 22.018 1 22.018 21.518 22.518 0 0 0 0 0.40038 1 2551 2551 0.6015 0 1 + 47632 20331 30046 30060 55025 55025 0.12369324322003195 VGPPAPPAC 9 Unmodified _VGPPAPPAC_ 0 0 0 REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF MSMS UPN47_class_I_Rep_1 2 404.70343017578125 2 404.704731 807.39491 NaN NaN NaN NaN NaN NaN NaN 99.981 1 103.78 103.28 104.28 3.7942 0 0 0 0.39326 1 24722 24722 2.3027 0 1 + 47633 21878 30047 30061 55026 55026 -0.016491871002244807 VGPPAPPAC 9 Unmodified _VGPPAPPAC_ 0 0 0 REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF MSMS UPN48_class_I_Rep_2 6 404.70367431640625 2 404.704731 807.39491 NaN NaN NaN NaN NaN NaN NaN 99.263 1 103.02 102.52 103.52 3.7575 0 0 0 0.39326 1 23573 23573 2.3027 0 1 + 47634 21878 30047 30061 55027 55027 -0.016491871002244807 VGPPARNP 8 Unmodified _VGPPARNP_ 0 0 0 REV__ENST00000441149.6_1_9:131010813-131013220:+|nuORF REV__ENST00000441149.6_1_9:131010813-131013220:+|nuORF MSMS UPN46_class_I_Rep_3 1 404.2633361816406 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 80.708 1 80.708 80.208 81.208 0 0 0 0 0.40364 1 19023 19023 5.7604 0 1 + 47635 18345 30048 30062 55028 55028 0.02892379757327035 VGPPGFLEQP 10 Unmodified _VGPPGFLEQP_ 0 0 0 ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 521.7767944335938 2 520.7742 1039.53385 0.052307 2.724E-05 0.0018043 9.3963E-07 0.054111 2.818E-05 520.7741188906288 62.068 0.89835 65.328 64.885 65.784 3.2594 139 60 3 0 0 0 0.51003 1 14642 14642 10.824 0.75 1 559300 47636 4129 30049 30063 55029 55029 0.01566054068939593 VGPPGFLEQP 10 Unmodified _VGPPGFLEQP_ 0 0 0 ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron MULTI-MATCH UPN47_class_I_Rep_1 2 2 520.7742 1039.53385 0.30625 0.00015949 -0.21887 -0.00011398 0.087379 4.5505E-05 520.774020190984 61.693 0.95885 65.061 64.763 65.722 3.3681 -0.13669 -9.8134E-05 NaN 10.824 156 70 3 NaN NaN NaN NaN 0 NaN NaN 0 502780 47637 4129 30049 30063 0.01566054068939593 VGPPGFLEQP 10 Unmodified _VGPPGFLEQP_ 0 0 0 ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron ENSG00000164776.10,PHKG1,chr7,-,I1.1,56088976,56092835|29|9.73|1|intron MULTI-MATCH UPN47_class_I_Rep_3 4 2 520.7742 1039.53385 0.27203 0.00014166 -0.16576 -8.6321E-05 0.10627 5.5343E-05 520.774018102267 62.038 0.81586 65.204 64.829 65.645 3.1667 0.0065165 -4.2809E-05 NaN 10.824 140 57 3 NaN NaN NaN NaN 0 NaN NaN 0 463860 47638 4129 30049 30063 0.01566054068939593 VGPPRPKG 8 Unmodified _VGPPRPKG_ 0 0 0 REV__MLT1G_dup1248|chr7:92820985-92821484:+|1.048068550495648|0.0075381381254684|7.12|151.0|12|2|sense REV__MLT1G_dup1248|chr7:92820985-92821484:+|1.048068550495648|0.0075381381254684|7.12|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 404.2435302734375 2 404.245412 806.476272 NaN NaN NaN NaN NaN NaN NaN 40.258 1 43.999 43.499 44.499 3.7413 0 0 0 0.40581 1 7230 7230 2.8892 0.31174 1 + 47639 31723 30050 30064 55030 55030 0.06529256654039273 VGPRLHAK 8 Unmodified _VGPRLHAK_ 0 0 0 REV__AluJr_dup69702|chr16:75007857-75008179:-|1.0163547903811243|0.0087404458491005|6.86|150.0|10|3|sense REV__AluJr_dup69702|chr16:75007857-75008179:-|1.0163547903811243|0.0087404458491005|6.86|150.0|10|3|sense MSMS UPN48_class_I_Rep_2 6 439.2714538574219 2 439.271961 876.52937 NaN NaN NaN NaN NaN NaN NaN 35.136 1 38.81 38.31 39.31 3.6735 0 0 0 0.40738 1 5753 5753 0.79363 0 1 + 47640 17051 30051 30065 55031 55031 0.08616634436691584 VGPVVRCL 8 Unmodified _VGPVVRCL_ 0 0 0 ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|2|intron;ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|3|intron;ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|3|intron;nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842.17,GLMN,chr1,-,I16.1,92248409,92262862|119|9.72|4|intron;ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|1|intron;ENSG00000174842|ENST00000370360|GLMN ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|2|intron ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|2|intron MSMS UPN48_class_I_Rep_2 6 421.7512512207031 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 80.878 1 84.535 84.035 85.035 3.6567 0 0 0 0.40364 1 19188 19188 5.7604 3.1829 1 47641 4693 30052 30066 55032 55032 0.057310675791541144 VGPVVRCL 8 Unmodified _VGPVVRCL_ 0 0 0 ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|2|intron;ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|3|intron;ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|3|intron;nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842.17,GLMN,chr1,-,I16.1,92248409,92262862|119|9.72|4|intron;ENSG00000174842.17,GLMN,chr1,-,I2.1,92291538,92297403|29|6.8|1|intron;ENSG00000174842|ENST00000370360|GLMN ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|2|intron ENSG00000174842.17,GLMN,chr1,-,I6.1,92271653,92286489|60|9.52|2|intron MSMS UPN48_class_I_Rep_2 6 421.7508544921875 2 421.749473 841.484393 NaN NaN NaN NaN NaN NaN NaN 80.998 1 84.655 84.155 85.155 3.6567 0 0 0 0.40364 1 19218 19218 5.7604 3.1829 1 47642 4693 30052 30066 55033 55033 0.057310675791541144 VGPYRKLT 8 Unmodified _VGPYRKLT_ 0 0 0 REV__LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|12|3|sense REV__LTR60_dup36|chr19:11902375-11902729:-|1.6704008970013513|0.1593239968219305|3.39|151.0|12|3|sense MSMS UPN47_class_I_Rep_2 3 467.2626037597656 2 467.279452 932.544351 NaN NaN NaN NaN NaN NaN NaN 45.473 1 48.826 48.326 49.326 3.3534 0 0 0 0.40364 1 9585 9585 5.7604 0.52976 1 + 47643 30987 30053 30067 55034 55034 0.07538081514042005 VGQNKLIK 8 Unmodified _VGQNKLIK_ 0 0 0 REV__MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|4|2|sense REV__MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.2864074707031 2 450.287277 898.560001 -0.35477 -0.00015975 -0.59436 -0.00026763 -0.94914 -0.00042738 450.2869288421527 38.26 0.51971 41.925 41.721 42.241 3.6652 68 39 2 0 0 0 0.82752 1 7319 7319 8.5933 0.68312 1 112900 + 47644 31307 30054 30068 55035 55035 0.10666368031093043 VGQNKLIK 8 Unmodified _VGQNKLIK_ 0 0 0 REV__MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|4|2|sense REV__MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 450.2867126464844 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 38.885 1 42.263 41.763 42.763 3.3785 0 0 0 0.39819 1 7577 7577 8.5933 1.304 1 + 47645 31307 30054 30068 55036 55036 0.10666368031093043 VGQNKLIK 8 Unmodified _VGQNKLIK_ 0 0 0 REV__MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|4|2|sense REV__MER41E_dup341|chr19:48878539-48878917:-|2.0455860044374776|0.2220385399547232|3.2|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 450.28717041015625 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 39.146 1 42.384 41.884 42.884 3.238 0 0 0 0.39819 1 7701 7701 8.5933 1.304 1 + 47646 31307 30054 30068 55037 55037 0.10666368031093043 VGQRMPGT 8 Unmodified _VGQRMPGT_ 0 0 0 nc|ENSG00000144048|O75319-2|DUSP11;ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11 nc|ENSG00000144048|O75319-2|DUSP11 nc|ENSG00000144048|O75319-2|DUSP11 MSMS UPN46_class_I_Rep_3 1 423.2201232910156 2 423.218537 844.422522 NaN NaN NaN NaN NaN NaN NaN 41.188 1 41.188 40.688 41.688 0 0 0 0 0.40604 1 8052 8052 2.5775 0 1 47647 3344 30055 30069 55038 55038 -0.00591283839969492 VGRAGRAR 8 Unmodified _VGRAGRAR_ 0 0 0 ENST00000343483.6_1_7:27205078-27205114:-|nuORF ENST00000343483.6_1_7:27205078-27205114:-|nuORF ENST00000343483.6_1_7:27205078-27205114:-|nuORF MSMS UPN47_class_I_Rep_3 4 421.75518798828125 2 421.75701 841.499467 NaN NaN NaN NaN NaN NaN NaN 75.336 1 78.582 78.082 79.082 3.2464 0 0 0 0.40798 1 18684 18684 0 0 1 47648 6246 30056 30070 55039 55039 0.07237695491346585 VGRCKGKR 8 Unmodified _VGRCKGKR_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS UPN46_class_I_Rep_3 1 453.25592041015625 2 452.268896 902.523239 -0.12263 -5.5464E-05 0.32358 0.00014635 0.20095 9.0883E-05 452.2690121383061 27.568 0.21499 27.568 27.506 27.721 0 25 15 3 0 0 0 0.82752 1 4132 4132 7.9102 3.1541 1 862700 + 47649 18863 30057 30071 55040 55040 0.06807792933534529 VGRCKGKR 8 Unmodified _VGRCKGKR_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MSMS UPN46_class_I_Rep_3 1 452.2691650390625 2 452.268896 902.523239 NaN NaN NaN NaN NaN NaN NaN 42.6 1 42.6 42.1 43.1 0 0 0 0 0.40604 1 8443 8443 2.5775 0 1 + 47650 18863 30057 30071 55041 55041 0.06807792933534529 VGRGRWLL 8 Unmodified _VGRGRWLL_ 0 0 0 LTR78_dup2152|chr6:150975424-150975743:-|1.0905794871436938|0.021230542665292|5.68|150.0|16|1|anti-sense LTR78_dup2152|chr6:150975424-150975743:-|1.0905794871436938|0.021230542665292|5.68|150.0|16|1|anti-sense LTR78_dup2152|chr6:150975424-150975743:-|1.0905794871436938|0.021230542665292|5.68|150.0|16|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 478.7919616699219 2 478.793061 955.571569 0.32088 0.00015364 -1.7591 -0.00084226 -1.4383 -0.00068863 478.7921311278273 54.118 0.55298 57.699 57.489 58.042 3.5817 45 34 2 0 0 0 0.72333 1 11429 11429 13.508 0.97634 1 100760 47651 15707 30058 30072 55042 55042 0.09200609845083818 VGRGRWLL 8 Unmodified _VGRGRWLL_ 0 0 0 LTR78_dup2152|chr6:150975424-150975743:-|1.0905794871436938|0.021230542665292|5.68|150.0|16|1|anti-sense LTR78_dup2152|chr6:150975424-150975743:-|1.0905794871436938|0.021230542665292|5.68|150.0|16|1|anti-sense LTR78_dup2152|chr6:150975424-150975743:-|1.0905794871436938|0.021230542665292|5.68|150.0|16|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 478.793061 955.571569 0.23206 0.00011111 -1.8163 -0.00086966 -1.5843 -0.00075855 478.7921337429552 54.288 0.51632 57.607 57.45 57.966 3.3187 -0.0916 -9.0947E-05 NaN 13.508 31 25 2 NaN NaN NaN NaN 0 NaN NaN 0 72854 47652 15707 30058 30072 0.09200609845083818 VGRHRRNP 8 Unmodified _VGRHRRNP_ 0 0 0 ENST00000505731.5_1_4:2937416-2940466:+|nuORF ENST00000505731.5_1_4:2937416-2940466:+|nuORF ENST00000505731.5_1_4:2937416-2940466:+|nuORF MSMS UPN46_class_I_Rep_3 1 496.2953186035156 2 496.286466 990.558379 NaN NaN NaN NaN NaN NaN NaN 68.981 1 68.981 68.481 69.481 0 0 0 0 0.40738 1 15780 15780 0.79363 0 1 47653 7152 30059 30073 55043 55043 0.06272171785690261 VGRLRWVDHL 10 Unmodified _VGRLRWVDHL_ 0 0 0 AluJb_dup32552|chr4:139033780-139034001:-|1.0782552409441677|0.0371161712520829|4.86|151.0|1|1|sense AluJb_dup32552|chr4:139033780-139034001:-|1.0782552409441677|0.0371161712520829|4.86|151.0|1|1|sense AluJb_dup32552|chr4:139033780-139034001:-|1.0782552409441677|0.0371161712520829|4.86|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 417.92041015625 3 417.575401 1249.70437 0.017845 7.4518E-06 -0.066109 -2.7605E-05 -0.048263 -2.0154E-05 417.57524726234294 43.302 0.68715 46.941 46.563 47.25 3.6385 97 56 3 0 0 0 0.84575 1 7997 7997 0.62683 0 1 171140 47654 43 30060 30074 55044 55044 0.08951009511065422 VGRNNCPA 8 Unmodified _VGRNNCPA_ 0 0 0 REV__ENSG00000136011|ENST00000388887|STAB2 REV__ENSG00000136011|ENST00000388887|STAB2 MSMS UPN46_class_I_Rep_3 1 415.62799072265625 2 415.700512 829.38647 NaN NaN NaN NaN NaN NaN NaN 42.339 1 42.339 41.839 42.839 0 0 0 0 0.40738 1 8374 8374 0.79363 0 1 + 47655 19169 30061 30075 55045 55045 -0.03504741016854496 VGRREKLI 8 Unmodified _VGRREKLI_ 0 0 0 LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81231689453125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 85.385 1 88.818 88.318 89.318 3.4329 0 0 0 0.40746 1 21242 21242 0.69038 0 1 47656 15624 30062 30076 55046 55046 0.12232861670997863 VGRREKLI 8 Unmodified _VGRREKLI_ 0 0 0 LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 85.594 1 89.027 88.527 89.527 3.4329 0 0 0 0.40746 1 21294 21294 0.69038 0 1 47657 15624 30062 30076 55047 55047 0.12232861670997863 VGRREKLI 8 Unmodified _VGRREKLI_ 0 0 0 LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 85.739 1 89.172 88.672 89.672 3.4329 0 0 0 0.40746 1 21330 21330 0.69038 0 1 47658 15624 30062 30076 55048 55048 0.12232861670997863 VGRREKLI 8 Unmodified _VGRREKLI_ 0 0 0 LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81195068359375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 96.458 1 99.937 99.437 100.44 3.4791 0 0 0 0.40746 1 23701 23701 0.69038 0 1 47659 15624 30062 30076 55049 55049 0.12232861670997863 VGRREKLI 8 Unmodified _VGRREKLI_ 0 0 0 LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8118591308594 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 97.887 1 101.37 100.87 101.87 3.4836 0 0 0 0.40746 1 24011 24011 0.69038 0 1 47660 15624 30062 30076 55050 55050 0.12232861670997863 VGRREKLI 8 Unmodified _VGRREKLI_ 0 0 0 LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense LTR34_dup151|chr12:31315056-31315392:-|1.0612468618655833|0.0167702241230988|5.98|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_2 3 485.81170654296875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 113.57 1 117.08 116.58 117.58 3.5109 0 0 0 0.40746 1 27627 27627 0.69038 0 1 47661 15624 30062 30076 55051 55051 0.12232861670997863 VGRRLNVWQQ 10 Unmodified _VGRRLNVWQQ_ 0 0 0 REV__ENSG00000143850|ENST00000272203|PLEKHA6 REV__ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS UPN47_class_I_Rep_1 2 628.3539428710938 2 628.354545 1254.69454 0.34617 0.00021752 -1.4425 -0.0009064 -1.0963 -0.00068888 628.8549708202574 51.852 0.3771 55.445 55.31 55.687 3.5933 33 23 2 0 0 0 0.56333 1 11476 11476 1.4819 0.8804 1 65358 + 47662 19466 30063 30077 55052 55052 0.07737821505702414 VGRRMLIF 8 Unmodified _VGRRMLIF_ 0 0 0 REV__ENST00000477571.5_1_7:139997281-140048561:-|nuORF REV__ENST00000477571.5_1_7:139997281-140048561:-|nuORF MSMS UPN46_class_I_Rep_3 1 496.2957458496094 2 496.297122 990.579691 NaN NaN NaN NaN NaN NaN NaN 40.058 1 40.058 39.558 40.558 0 0 0 0 0.40404 1 7750 7750 5.2307 1.2863 1 + 47663 22545 30064 30078 55053 55053 0.0840242077019866 VGRSRAAK 8 Unmodified _VGRSRAAK_ 0 0 0 REV__ENST00000491212.1_1_1:2457327-2457474:-|nuORF REV__ENST00000491212.1_1_1:2457327-2457474:-|nuORF MSMS UPN46_class_I_Rep_3 1 422.74761962890625 2 422.759218 843.503883 NaN NaN NaN NaN NaN NaN NaN 12.537 1 12.537 12.037 13.037 0 0 0 0 0.40738 1 138 138 0.79363 0 1 + 47664 22631 30065 30079 55054 55054 0.07587159914271524 VGRYPYVV 8 Unmodified _VGRYPYVV_ 0 0 0 L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|45|3|anti-sense L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|45|3|anti-sense L1MB2_dup3855|chr8:23061434-23062146:-|1.3507758740538265|0.0451676834505826|4.9|151.0|45|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.7665100097656 2 476.766178 951.517802 0.12957 6.1777E-05 -0.66348 -0.00031633 -0.53391 -0.00025455 476.7657701164276 62.582 0.69913 65.838 65.503 66.203 3.2558 67 45 2 0 0 0 0.82752 1 14723 14723 0.79363 0 1 114610 47665 10245 30066 30080 55055 55055 0.040103926226947806 VGSDNQYY 8 Unmodified _VGSDNQYY_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MSMS UPN47_class_I_Rep_2 3 473.2873840332031 2 473.201064 944.387576 NaN NaN NaN NaN NaN NaN NaN 79.942 1 83.311 82.811 83.811 3.3694 0 0 0 0.40738 1 19916 19916 0.79363 0 1 + 47666 32069 30067 30081 55056 55056 -0.08684248166957786 VGSLGLNVRG 10 Unmodified _VGSLGLNVRG_ 0 0 0 REV__nc|ENSG00000146842|Q96SK2-3|TMEM209 REV__nc|ENSG00000146842|Q96SK2-3|TMEM209 MULTI-MSMS UPN48_class_I_Rep_3 7 486.2845458984375 2 486.285266 970.555979 0.13854 6.7368E-05 2.1758 0.0010581 2.3144 0.0011254 486.285078120479 35.257 0.53548 38.929 38.75 39.286 3.6721 86 55 2 0 0 0 0.41718 1 5684 5684 18.146 0 1 78489 + 47667 19551 30068 30082 55057 55057 0.06952278537380607 VGSLNIICIYC 11 Unmodified _VGSLNIICIYC_ 0 0 0 L1ME3A_dup14823|chr20:8410032-8410474:-|1.4098154484443917|0.0083060979357836|7.41|150.0|21|1|anti-sense L1ME3A_dup14823|chr20:8410032-8410474:-|1.4098154484443917|0.0083060979357836|7.41|150.0|21|1|anti-sense L1ME3A_dup14823|chr20:8410032-8410474:-|1.4098154484443917|0.0083060979357836|7.41|150.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 599.3031005859375 2 599.303952 1196.59335 NaN NaN NaN NaN NaN NaN NaN 65.207 1 68.563 68.063 69.063 3.3557 0 0 0 0.38417 1 15538 15538 1.4819 0.15237 1 47668 12651 30069 30083 55058 55058 0.002918656964766342 VGSQFPPK 8 Unmodified _VGSQFPPK_ 0 0 0 REV__nc|ENSG00000132680|Q7Z7F0-4|KHDC4 REV__nc|ENSG00000132680|Q7Z7F0-4|KHDC4 MSMS UPN46_class_I_Rep_3 1 430.2561340332031 2 430.237253 858.459953 NaN NaN NaN NaN NaN NaN NaN 35.536 1 35.536 35.036 36.036 0 0 0 0 0.40604 1 6481 6481 2.5775 0 1 + 47669 22476 30070 30084 55059 55059 0.025061306972816055 VGSRLPSHG 9 Unmodified _VGSRLPSHG_ 0 0 0 MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|79|2|anti-sense MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|79|2|anti-sense MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|79|2|anti-sense MSMS UPN47_class_I_Rep_3 4 455.2485656738281 2 455.248683 908.482814 NaN NaN NaN NaN NaN NaN NaN 46.02 1 49.264 48.764 49.764 3.2441 0 0 0 0.38639 1 9806 9806 3.9444 0.3479 1 47670 16183 30071 30085 55060 55060 0.024911498147503153 VGSRMIRG 8 Unmodified _VGSRMIRG_ 0 0 0 REV__AluSg_dup18463|chr9:131454629-131454923:-|1.0043990275583294|0.0381740451797475|4.72|151.0|5|2|sense REV__AluSg_dup18463|chr9:131454629-131454923:-|1.0043990275583294|0.0381740451797475|4.72|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 438.2405700683594 2 438.247629 874.480705 NaN NaN NaN NaN NaN NaN NaN 31.392 1 35.033 34.533 35.533 3.641 0 0 0 0.40738 1 4717 4717 0.79363 0 1 + 47671 17092 30072 30086 55061 55061 0.03844397805312383 VGSTWFKLPG 10 Unmodified _VGSTWFKLPG_ 0 0 0 L1PA5_dup2154|chr3:121857673-121863828:-|3.321150018743863|0.0539867527849563|5.94|151.0|306|2|anti-sense L1PA5_dup2154|chr3:121857673-121863828:-|3.321150018743863|0.0539867527849563|5.94|151.0|306|2|anti-sense L1PA5_dup2154|chr3:121857673-121863828:-|3.321150018743863|0.0539867527849563|5.94|151.0|306|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.2814331054688 2 546.297842 1090.58113 NaN NaN NaN NaN NaN NaN NaN 33.711 1 37.15 36.65 37.65 3.4398 0 0 0 0.53105 1 6006 6006 5.7319 0 1 47672 14440 30073 30087 55062 55062 0.039463333399453404 VGSVTLTR 8 Unmodified _VGSVTLTR_ 0 0 0 REV__ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|7|intron REV__ENSG00000168014.17,C2CD3,chr11,-,I41.1,74016802,74028286|45|5.72|7|intron MSMS UPN46_class_I_Rep_3 1 416.75628662109375 2 416.747985 831.481417 NaN NaN NaN NaN NaN NaN NaN 39.624 1 39.624 39.124 40.124 0 0 0 0 0.40157 1 7628 7628 7.2892 0 1 + 47673 20253 30074 30088 55063 55063 0.058935157259952575 VGTDVKTI 8 Unmodified _VGTDVKTI_ 0 0 0 REV__L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|9|1|sense REV__L1ME2z_dup2751|chr7:36491508-36493051:-|1.0223021170258195|0.0108374657520681|6.56|150.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 416.7561950683594 2 416.742368 831.470183 NaN NaN NaN NaN NaN NaN NaN 109.14 1 112.75 112.25 113.25 3.6046 0 0 0 0.40625 1 26897 26897 2.3027 0 1 + 47674 27914 30075 30089 55064 55064 0.04770693631871836 VGTKAKWLPIV 11 Unmodified _VGTKAKWLPIV_ 0 0 0 REV__AluSz6_dup41761|chr17:67932418-67932715:+|1.7826130695129372|0.0407574754868021|5.45|151.0|1|1|sense REV__AluSz6_dup41761|chr17:67932418-67932715:+|1.7826130695129372|0.0407574754868021|5.45|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 404.5889587402344 3 404.588536 1210.74378 NaN NaN NaN NaN NaN NaN NaN 43.379 1 43.379 42.879 43.879 0 0 0 0 0.38417 1 8657 8657 4.1166 1.0444 1 + 47675 17234 30076 30090 55065 55065 0.14683716741933495 VGTKGYYP 8 Unmodified _VGTKGYYP_ 0 0 0 REV__nc|ENSG00000151233|Q4G148-2|GXYLT1 REV__nc|ENSG00000151233|Q4G148-2|GXYLT1 MULTI-MSMS UPN47_class_I_Rep_1 2 442.7292175292969 2 442.729261 883.443968 0.1651 7.3093E-05 0.19183 8.4929E-05 0.35693 0.00015802 442.7292175437131 100.01 1.2046 103.8 103.1 104.3 3.7942 232 161 2 0 0 0 0.82752 1 24732 24732 7.9102 0 1 395110 + 47676 19649 30077 30091 55066 55066 -0.002415755396214081 VGTKGYYP 8 Unmodified _VGTKGYYP_ 0 0 0 REV__nc|ENSG00000151233|Q4G148-2|GXYLT1 REV__nc|ENSG00000151233|Q4G148-2|GXYLT1 MULTI-MSMS UPN48_class_I_Rep_3 7 442.7291564941406 2 442.729261 883.443968 0.15164 6.7134E-05 0.28612 0.00012667 0.43776 0.00019381 442.72918437557956 99.595 1.0834 103.48 102.91 103.99 3.8839 216 153 2 0 0 0 0.82752 1 23563 23563 12.532 0 1 447810 + 47677 19649 30077 30091 55067 55067 -0.002415755396214081 VGTLNRPR 8 Unmodified _VGTLNRPR_ 0 0 0 nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 nc|ENSG00000065361|P21860-4|ERBB3 nc|ENSG00000065361|P21860-4|ERBB3 MULTI-MSMS UPN47_class_I_Rep_1 2 456.77215576171875 2 456.772326 911.530098 -0.41815 -0.000191 -0.15828 -7.2298E-05 -0.57643 -0.0002633 456.7723082881146 17.374 0.52553 20.924 20.6 21.125 3.5504 88 62 2 0 0 0 0.82752 3 1258 1258;1288;1317 3.9444 0 1 47977 47678 1005 30078 30092 55068;55069;55070 55068 0.07079429085740685 VGTLSVNSLR 10 Unmodified _VGTLSVNSLR_ 0 0 0 REV__ENSG00000184304|ENST00000331968|PRKD1 REV__ENSG00000184304|ENST00000331968|PRKD1 MULTI-MSMS UPN47_class_I_Rep_2 3 523.3035278320312 2 523.303655 1044.59276 0.066267 3.4678E-05 -0.24882 -0.00013021 -0.18256 -9.5532E-05 523.3035180226237 77.641 0.8301 80.973 80.511 81.341 3.3315 112 83 2 0 0 0 0.56309 1 19321 19321 1.6526 0 1 177760 + 47679 20813 30079 30093 55071 55071 0.07224530363282611 VGTVSKKI 8 Unmodified _VGTVSKKI_ 0 0 0 REV__L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|11|2|sense REV__L1MB7_dup22717|chr22:42821226-42822004:-|1.1393895159260137|0.1201930302094776|3.24|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 416.2685241699219 2 416.268553 830.522553 NaN NaN NaN NaN NaN NaN NaN 29.161 1 32.919 32.419 33.419 3.7578 0 0 0 0.40738 1 4593 4593 0.79363 0 1 + 47680 26228 30080 30094 55072 55072 0.10051276765477724 VGVALFRA 8 Unmodified _VGVALFRA_ 0 0 0 REV__L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|31|3|sense REV__L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|31|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 416.75616455078125 2 416.755613 831.496673 -0.24294 -0.00010125 -0.9887 -0.00041204 -1.2316 -0.00051329 416.7561945864426 26.969 0.14534 26.969 26.94 27.086 0 19 11 2 0 0 0 0.82752 1 3944 3944 0.79363 0 1 196750 + 47681 26714 30081 30095 55073 55073 0.07418427313837128 VGVARRPD 8 Unmodified _VGVARRPD_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MULTI-MSMS UPN46_class_I_Rep_3 1 435.2509765625 2 435.251226 868.487899 0.11128 4.8437E-05 -0.32874 -0.00014308 -0.21745 -9.4647E-05 435.2508906316663 73.762 0.11935 73.762 73.664 73.783 0 27 12 3 0 0 0 0.82752 1 17113 17113 2.3027 0 1 175110 + 47682 18364 30082 30096 55074 55074 0.048394536773685104 VGVARRPD 8 Unmodified _VGVARRPD_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MSMS UPN46_class_I_Rep_3 1 435.25103759765625 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 76.209 1 76.209 75.709 76.709 0 0 0 0 0.40738 1 17763 17763 0.79363 0 1 + 47683 18364 30082 30096 55075 55075 0.048394536773685104 VGVARRPD 8 Unmodified _VGVARRPD_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MULTI-MSMS UPN47_class_I_Rep_1 2 435.25054931640625 2 435.251226 868.487899 0.010806 4.7035E-06 -0.51076 -0.00022231 -0.49996 -0.00021761 435.25089279725137 71.439 1.1492 74.814 74.672 75.821 3.3751 114 88 2 0 0 0 0.82752 1 17398 17398 0.79363 0 1 215990 + 47684 18364 30082 30096 55076 55076 0.048394536773685104 VGVARRPD 8 Unmodified _VGVARRPD_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MULTI-MSMS UPN47_class_I_Rep_2 3 435.2508850097656 2 435.251226 868.487899 -0.39606 -0.00017239 -0.24544 -0.00010683 -0.6415 -0.00027922 435.25099104155055 70.691 1.8543 73.974 72.963 74.817 3.2828 275 170 2 0 0 0 0.82752 1 17190 17190 2.3027 0 1 254760 + 47685 18364 30082 30096 55077 55077 0.048394536773685104 VGVARRPD 8 Unmodified _VGVARRPD_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MSMS UPN47_class_I_Rep_2 3 435.2510986328125 2 435.251226 868.487899 NaN NaN NaN NaN NaN NaN NaN 72.094 1 75.384 74.884 75.884 3.2899 0 0 0 0.40625 1 17654 17654 2.3027 0 1 + 47686 18364 30082 30096 55078 55078 0.048394536773685104 VGVARRPD 8 Unmodified _VGVARRPD_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MULTI-MSMS UPN47_class_I_Rep_3 4 435.25048828125 2 435.251226 868.487899 -0.4012 -0.00017462 -0.15926 -6.9317E-05 -0.56046 -0.00024394 435.25102546217005 71.164 1.8647 74.382 72.91 74.775 3.2188 221 159 2 0 0 0 0.82752 1 17135 17135 2.3027 0 1 332500 + 47687 18364 30082 30096 55079 55079 0.048394536773685104 VGVFVVYV 8 Unmodified _VGVFVVYV_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MSMS UPN46_class_I_Rep_3 1 441.2579040527344 2 441.260197 880.50584 NaN NaN NaN NaN NaN NaN NaN 30.24 1 30.24 29.74 30.74 0 0 0 0 0.40581 1 4896 4896 2.8892 0 1 47688 905 30083 30097 55080 55080 0.06080775879513567 VGVFVYLVPN 10 Unmodified _VGVFVYLVPN_ 0 0 0 REV__ENSG00000173578|ENST00000309285|XCR1 REV__ENSG00000173578|ENST00000309285|XCR1 MULTI-SECPEP UPN48_class_I_Rep_2 6 553.31640625 2 553.815867 1105.61718 0.49616 0.00027478 0.92749 0.00051366 1.4237 0.00078844 553.8175667857543 51.324 0.27097 54.992 54.865 55.136 3.6679 25 18 2 0 0 0 0.84575 1 10585 10585 12.532 4.6214 1 92335 + 47689 20491 30084 30098 55081 55081 0.06859790516796238 VGVLAIPFAI 10 Unmodified _VGVLAIPFAI_ 0 0 0 ENSG00000128271|ENST00000337539|ADORA2A ENSG00000128271|ENST00000337539|ADORA2A ENSG00000128271|ENST00000337539|ADORA2A MSMS UPN48_class_I_Rep_1 5 500.3153381347656 2 500.315503 998.616454 NaN NaN NaN NaN NaN NaN NaN 72.836 1 76.309 75.809 76.809 3.4732 0 0 0 0.53105 1 17122 17122 4.3292 0 1 47690 2586 30085 30099 55082 55082 0.11708995867752492 VGVLGFREHI 10 Unmodified _VGVLGFREHI_ 0 0 0 REV__L1MEf_dup4599|chr6:149365365-149366751:-|1.0725113075523796|0.2151116254967824|2.32|151.0|78|2|anti-sense REV__L1MEf_dup4599|chr6:149365365-149366751:-|1.0725113075523796|0.2151116254967824|2.32|151.0|78|2|anti-sense MSMS UPN48_class_I_Rep_2 6 563.822265625 2 563.822015 1125.62948 NaN NaN NaN NaN NaN NaN NaN 44.991 1 48.753 48.253 49.253 3.7617 0 0 0 0.53105 1 8639 8639 2.9952 0 1 + 47691 28637 30086 30100 55083 55083 0.0716882697984147 VGVLLWPIY 9 Unmodified _VGVLLWPIY_ 0 0 0 HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|66|2|sense HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|66|2|sense HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|66|2|sense MSMS UPN47_class_I_Rep_1 2 530.3172607421875 2 530.315503 1058.61645 NaN NaN NaN NaN NaN NaN NaN 77.112 1 80.527 80.027 81.027 3.4149 0 0 0 0.39326 1 19114 19114 2.3027 0.24298 1 47692 8363 30087 30101 55084 55084 0.08948995867763188 VGVLQLMKKPV 11 Unmodified _VGVLQLMKKPV_ 0 0 0 REV__nc|ENSG00000134057|P14635-2|CCNB1 REV__nc|ENSG00000134057|P14635-2|CCNB1 MULTI-SECPEP UPN47_class_I_Rep_3 4 404.8959045410156 3 404.58966 1210.74715 -1.2041 -0.00048718 -0.77394 -0.00031313 -1.9781 -0.00080031 404.5893070453036 36.542 0.5305 39.789 39.365 39.896 3.247 42 34 2 0 0 0 22.551 1 6916 6916 1.4551 0 1 96664 + 47693 19082 30088 30102 55085 55085 0.15020643524280786 VGVLVIRI 8 Unmodified _VGVLVIRI_ 0 0 0 REV__ENSG00000148848|ENST00000448723|ADAM12 REV__ENSG00000148848|ENST00000448723|ADAM12 MULTI-MSMS UPN46_class_I_Rep_3 1 434.8023376464844 2 434.802563 867.590573 0.090079 3.9167E-05 -0.41098 -0.00017869 -0.3209 -0.00013953 434.8023615273827 67.269 0.40508 67.269 66.971 67.376 0 63 38 2 0 0 0 0.82752 1 15241 15241 0.79363 0 1 1527300 + 47694 19603 30089 30103 55086 55086 0.15148146416106556 VGVPDRVR 8 Unmodified _VGVPDRVR_ 0 0 0 L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|352|3|anti-sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|352|3|anti-sense L1PA3_dup7432|chr10:18627419-18633448:+|1.565499013880989|0.0857474141899873|4.19|150.0|352|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 449.2664794921875 2 449.266876 896.519199 0.10209 4.5866E-05 -0.533 -0.00023946 -0.4309 -0.00019359 449.2665615079943 81.472 0.75276 84.959 84.543 85.296 3.4874 139 77 3 0 0 0 0.82752 1 20269 20269 0.79363 0 1 198560 47695 14281 30090 30104 55087 55087 0.06680026711467235 VGVPGRAR 8 Unmodified _VGVPGRAR_ 0 0 0 L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense MSMS UPN46_class_I_Rep_3 1 406.2485046386719 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 83.443 1 83.443 82.943 83.943 0 0 0 0 0.40604 1 19820 19820 2.5775 0 1 47696 14295 30091 30105 55088 55088 0.06959774885547176 VGVPGRAR 8 Unmodified _VGVPGRAR_ 0 0 0 L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.2322998046875 2 406.248486 810.48242 -0.20071 -8.1538E-05 -1.2134 -0.00049295 -1.4141 -0.00057449 406.2482422542151 29.831 0.0499 29.831 29.801 29.851 0 6 4 2 0 0 0 0.72333 1 4776 4776 2.5775 0 1 20902 47697 14295 30091 30105 55089 55089 0.06959774885547176 VGVPGRAR 8 Unmodified _VGVPGRAR_ 0 0 0 L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 406.2484130859375 2 406.248486 810.48242 0.082141 3.3369E-05 -0.17973 -7.3014E-05 -0.097588 -3.9645E-05 406.24841343999043 112.66 0.072388 116.32 116.3 116.38 3.6648 11 7 2 0 0 0 0.82752 1 26858 26858 0.69038 0 1 251860 47698 14295 30091 30105 55090 55090 0.06959774885547176 VGVPGRAR 8 Unmodified _VGVPGRAR_ 0 0 0 L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense L1PA3_dup9734|chr16:47182758-47188783:+|4.472997099942054|0.2613276962043401|4.1|151.0|226|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 406.248486 810.48242 0.094685 3.8466E-05 0.87701 0.00035628 0.97169 0.00039475 406.2487333859089 112.64 0.073792 116.21 116.17 116.25 3.572 -0.057161 0.00070884 NaN 0.69038 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 61838 47699 14295 30091 30105 0.06959774885547176 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 428.26153564453125 2 428.261594 854.508634 0.12531 5.3667E-05 -0.025483 -1.0913E-05 0.09983 4.2753E-05 428.2615464515334 85.482 0.29425 85.482 85.452 85.747 0 75 30 4 0 0 0 0.82752 1 20405 20405 5.2307 0 1 6493300 47700 6752 30092 30106 55091 55091 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 428.2614440917969 2 428.261594 854.508634 0.1256 5.3791E-05 -0.18436 -7.8954E-05 -0.058757 -2.5163E-05 428.2614299545338 85.671 0.20193 85.671 85.606 85.808 0 51 18 3 0 0 0 0.82752 1 20441 20441 5.2307 0 1 1409600 47701 6752 30092 30106 55092 55092 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 428.261474609375 2 428.261594 854.508634 0.12578 5.3867E-05 -0.10834 -4.6396E-05 0.017446 7.4714E-06 428.2614282602351 85.847 0.27379 85.847 85.747 86.02 0 76 29 4 0 0 0 0.82752 1 20505 20505 2.3027 0 1 1062000 47702 6752 30092 30106 55093 55093 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 428.261474609375 2 428.261594 854.508634 0.12585 5.3896E-05 -0.069096 -2.9591E-05 0.056753 2.4305E-05 428.26143454685433 86.168 0.25126 86.168 86.031 86.282 0 59 23 4 0 0 0 0.72333 1 20569 20569 2.3027 0 1 745590 47703 6752 30092 30106 55094 55094 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 428.261474609375 2 428.261594 854.508634 0.15772 6.7547E-05 -0.029785 -1.2756E-05 0.12794 5.4791E-05 428.26166310201023 81.528 1.5084 85.213 84.749 86.257 3.685 538 191 5 0 0 0 0.82752 6 19229 19229;19258;19290;19320;19355;19389 5.2307 0 1 17088000 47704 6752 30092 30106 55095;55096;55097;55098;55099;55100 55095 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 428.261594 854.508634 0.056985 2.4404E-05 -0.093921 -4.0223E-05 -0.036937 -1.5819E-05 428.26145796326415 82.615 0.22338 86.153 86.117 86.34 3.5386 -0.0039021 -1.6738E-05 NaN 2.3027 48 25 2 NaN NaN NaN NaN 0 NaN NaN 0 266120 47705 6752 30092 30106 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 428.261594 854.508634 -0.068438 -2.9309E-05 -0.036454 -1.5612E-05 -0.10489 -4.4921E-05 428.26146871552146 82.214 0.34711 85.789 85.738 86.085 3.5753 0.058892 5.2206E-05 NaN 5.2307 102 41 3 NaN NaN NaN NaN 0 NaN NaN 0 540370 47706 6752 30092 30106 0.07556044057025701 VGVPTRAR 8 Unmodified _VGVPTRAR_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 428.261594 854.508634 -0.069335 -2.9693E-05 -0.038268 -1.6389E-05 -0.1076 -4.6082E-05 428.2614325491153 82.575 0.21384 86.15 86.085 86.299 3.5753 -0.0067041 3.0931E-05 NaN 2.3027 45 26 2 NaN NaN NaN NaN 0 NaN NaN 0 160150 47707 6752 30092 30106 0.07556044057025701 VGVPVFGCFV 10 Unmodified _VGVPVFGCFV_ 0 0 0 REV__L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|44|2|anti-sense REV__L1MB2_dup1703|chr3:185677416-185678447:+|1.9122417352054148|0.0672792177296356|4.83|148.0|44|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 512.2711791992188 2 512.270238 1022.52592 0.3204 0.00016413 1.2525 0.00064163 1.5729 0.00080576 512.2707714540766 99.233 0.22742 99.233 99.182 99.41 0 26 21 2 0 0 0 0.56281 1 24171 24171 1.8442 1.0506 1 284400 + 47708 25706 30093 30107 55101 55101 0.01556203547829682 VGVRGWGT 8 Unmodified _VGVRGWGT_ 0 0 0 ENST00000374861.7_3_9:104161204-104161267:+|nuORF ENST00000374861.7_3_9:104161204-104161267:+|nuORF ENST00000374861.7_3_9:104161204-104161267:+|nuORF MSMS UPN46_class_I_Rep_3 1 416.22723388671875 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 59.533 1 59.533 59.033 60.033 0 0 0 0 0.40581 1 13168 13168 2.8892 0 1 47709 6434 30094 30108 55102 55102 0.017883797573290394 VGVTILLY 8 Unmodified _VGVTILLY_ 0 0 0 REV__ENST00000563400.1_1_16:34326999-34329423:+|nuORF REV__ENST00000563400.1_1_16:34326999-34329423:+|nuORF MSMS UPN48_class_I_Rep_1 5 439.2712097167969 2 439.273304 876.532055 NaN NaN NaN NaN NaN NaN NaN 38.821 1 42.326 41.826 42.826 3.5048 0 0 0 0.40581 1 6776 6776 2.8892 0 1 + 47710 17785 30095 30109 55103 55103 0.08885045050988083 VGVVREAI 8 Unmodified _VGVVREAI_ 0 0 0 L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|153|1|anti-sense L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|153|1|anti-sense L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|153|1|anti-sense MSMS UPN46_class_I_Rep_3 1 421.75762939453125 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 27.328 1 27.328 26.828 27.828 0 0 0 0 0.40738 1 4044 4044 0.79363 0 1 47711 14804 30096 30110 55104 55104 0.07506106105654453 VGVVREAI 8 Unmodified _VGVVREAI_ 0 0 0 L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|153|1|anti-sense L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|153|1|anti-sense L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|153|1|anti-sense MSMS UPN46_class_I_Rep_3 1 421.7578430175781 2 421.758352 841.502152 NaN NaN NaN NaN NaN NaN NaN 28.568 1 28.568 28.068 29.068 0 0 0 0 0.40738 1 4405 4405 0.79363 0 1 47712 14804 30096 30110 55105 55105 0.07506106105654453 VGVVRRVD 8 Unmodified _VGVVRRVD_ 0 0 0 nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A;nc|ENSG00000073417|O60658-4|PDE8A;nc|ENSG00000073417|O60658-3|PDE8A;nc|ENSG00000073417|O60658-5|PDE8A nc|ENSG00000073417|O60658-6|PDE8A nc|ENSG00000073417|O60658-6|PDE8A MULTI-MSMS UPN46_class_I_Rep_3 1 450.2748107910156 2 450.274701 898.534849 0.18566 8.3599E-05 0.081486 3.6691E-05 0.26715 0.00012029 450.2747051574598 89.943 0.14764 89.943 89.895 90.042 0 12 8 2 0 0 0 0.82752 1 21668 21668 0.79363 0 1 227840 47713 1115 30097 30111 55106 55106 0.08152313228515595 VGVVRRVD 8 Unmodified _VGVVRRVD_ 0 0 0 nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A;nc|ENSG00000073417|O60658-4|PDE8A;nc|ENSG00000073417|O60658-3|PDE8A;nc|ENSG00000073417|O60658-5|PDE8A nc|ENSG00000073417|O60658-6|PDE8A nc|ENSG00000073417|O60658-6|PDE8A MULTI-MATCH UPN48_class_I_Rep_1 5 2 450.274701 898.534849 0.018565 8.3596E-06 0.39357 0.00017721 0.41213 0.00018557 450.2749878748604 86.29 0.075867 89.903 89.893 89.969 3.613 0.035444 0.00016408 NaN 0.79363 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 60128 47714 1115 30097 30111 0.08152313228515595 VGWEGNFQR 9 Unmodified _VGWEGNFQR_ 0 0 0 REV__L1ME1_dup29438|chr20:1487815-1488361:+|1.4835224092403925|0.0226050642465849|6.04|150.0|10|2|sense REV__L1ME1_dup29438|chr20:1487815-1488361:+|1.4835224092403925|0.0226050642465849|6.04|150.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 546.7667846679688 2 546.764697 1091.51484 NaN NaN NaN NaN NaN NaN NaN 45.332 1 48.969 48.469 49.469 3.6369 0 0 0 0.39518 1 8668 8668 1.8442 0.36234 1 + 47715 27744 30098 30112 55107 55107 -0.027254825021145734 VGWEWMGC 8 Unmodified _VGWEWMGC_ 0 0 0 REV__L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|22|2|sense REV__L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|22|2|sense MSMS UPN46_class_I_Rep_3 1 483.7739562988281 2 484.193674 966.372794 NaN NaN NaN NaN NaN NaN NaN 69.385 1 69.385 68.885 69.885 0 0 0 0 0.40738 1 15896 15896 0.79363 0 1 + 47716 26322 30099 30113 55108 55108 -0.11173734840281213 VGWEWMGC 8 Unmodified _VGWEWMGC_ 0 0 0 REV__L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|22|2|sense REV__L1MB7_dup8504|chr7:39972304-39973146:-|1.1679748715211995|0.0148752486021724|6.29|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 483.9810791015625 2 484.193674 966.372794 NaN NaN NaN NaN NaN NaN NaN 68.484 1 71.682 71.182 72.182 3.1977 0 0 0 0.40738 1 16644 16644 0.79363 0 1 + 47717 26322 30099 30113 55109 55109 -0.11173734840281213 VGWPPEGA 8 Unmodified _VGWPPEGA_ 0 0 0 ENST00000463783.1_1_3:196666298-196669396:-|nuORF;ENST00000428425.1_1_3:196669246-196669396:-|nuORF ENST00000463783.1_1_3:196666298-196669396:-|nuORF ENST00000463783.1_1_3:196666298-196669396:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 406.87689208984375 2 406.700503 811.386454 -0.3216 -0.0001308 -1.9772 -0.00080411 -2.2988 -0.00093491 406.69851381325486 24.391 0.21901 24.391 24.258 24.477 0 39 22 2 0 0 0 0.72333 1 3215 3215 0.79363 0 1 28501 47718 6712 30100 30114 55110 55110 -0.02678417745198658 VGWPPVRR 8 Unmodified _VGWPPVRR_ 0 0 0 L1PBa_dup1194|chr9:36415420-36416742:-|2.802208398262921|0.0663109662232177|5.4|151.0|65|2|anti-sense L1PBa_dup1194|chr9:36415420-36416742:-|2.802208398262921|0.0663109662232177|5.4|151.0|65|2|anti-sense L1PBa_dup1194|chr9:36415420-36416742:-|2.802208398262921|0.0663109662232177|5.4|151.0|65|2|anti-sense MSMS UPN46_class_I_Rep_3 1 483.78436279296875 2 483.785236 965.555919 NaN NaN NaN NaN NaN NaN NaN 71.575 1 71.575 71.075 72.075 0 0 0 0 0.40738 1 16496 16496 0.79363 0 1 47719 15364 30101 30115 55111 55111 0.07176323328030776 VGWWLLRNGD 10 Unmodified _VGWWLLRNGD_ 0 0 0 L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|9|3|sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|9|3|sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|9|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 405.7981872558594 3 405.88049 1214.61964 0.15266 6.1963E-05 4.2273 0.0017158 4.38 0.0017777 405.88196811764067 20.996 0.091507 24.644 24.611 24.702 3.648 10 9 2 0 0 0 0.84575 1 1899 1899 0.77653 0.27058 1 17266 47720 10715 30102 30116 55112 55112 0.02091638974457055 VGWWLLRNGD 10 Unmodified _VGWWLLRNGD_ 0 0 0 L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|9|3|sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|9|3|sense L1MB7_dup14832|chr11:47495232-47495569:+|2.7948494679883944|0.1244208377556221|4.49|151.0|9|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 405.88049 1214.61964 -0.032131 -1.3041E-05 3.0141 0.0012234 2.982 0.0012103 406.2156521867938 20.99 0.022312 24.535 24.518 24.541 3.5454 -0.054445 -0.0012782 NaN 0.77653 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 13971 47721 10715 30102 30116 0.02091638974457055 VGYNKAVVRV 10 Unmodified _VGYNKAVVRV_ 0 0 0 REV__ENSG00000145626|ENST00000274278|UGT3A1 REV__ENSG00000145626|ENST00000274278|UGT3A1 MULTI-MSMS UPN47_class_I_Rep_1 2 553.3311767578125 2 552.82984 1103.64513 0.10257 5.6705E-05 -0.11389 -6.296E-05 -0.011314 -6.2549E-06 552.8296117642719 44.263 0.74417 47.958 47.535 48.279 3.6951 81 50 2 0 0 0 0.52083 2 9161 9161;9208 9.3831 2.0939 1 102230 + 47722 19518 30103 30117 55113;55114 55113 0.09745113496887825 VGYNKAVVRV 10 Unmodified _VGYNKAVVRV_ 0 0 0 REV__ENSG00000145626|ENST00000274278|UGT3A1 REV__ENSG00000145626|ENST00000274278|UGT3A1 MULTI-MSMS UPN47_class_I_Rep_2 3 552.8311157226562 2 552.82984 1103.64513 0.18272 0.00010101 -0.47049 -0.0002601 -0.28777 -0.00015909 552.8296020798246 44.6 0.87377 47.955 47.628 48.501 3.3555 78 57 2 0 0 0 0.52083 1 9320 9320 9.3831 2.0939 1 87234 + 47723 19518 30103 30117 55115 55115 0.09745113496887825 VGYNKAVVRV 10 Unmodified _VGYNKAVVRV_ 0 0 0 REV__ENSG00000145626|ENST00000274278|UGT3A1 REV__ENSG00000145626|ENST00000274278|UGT3A1 MULTI-MSMS UPN47_class_I_Rep_3 4 552.8294677734375 2 552.82984 1103.64513 0.21072 0.00011649 -0.17228 -9.5241E-05 0.038445 2.1254E-05 552.8296781242598 44.897 0.76068 48.141 47.656 48.417 3.2441 67 47 2 0 0 0 0.54822 1 9420 9420 5.7319 0 1 91182 + 47724 19518 30103 30117 55116 55116 0.09745113496887825 VHACHFWE 8 Unmodified _VHACHFWE_ 0 0 0 HAL1_dup15270|chr11:9219030-9219713:+|1.1062031701259936|0.0086409344563159|7.0|151.0|32|1|anti-sense HAL1_dup15270|chr11:9219030-9219713:+|1.1062031701259936|0.0086409344563159|7.0|151.0|32|1|anti-sense HAL1_dup15270|chr11:9219030-9219713:+|1.1062031701259936|0.0086409344563159|7.0|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_2 3 514.7239990234375 2 514.723987 1027.43342 NaN NaN NaN NaN NaN NaN NaN 42.869 1 46.23 45.73 46.73 3.3611 0 0 0 0.40738 1 8785 8785 0.79363 0 1 47725 7811 30104 30118 55117 55117 -0.07919881465704748 VHAGRHPH 8 Unmodified _VHAGRHPH_ 0 0 0 REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF MSMS UPN47_class_I_Rep_2 3 455.740478515625 2 455.74136 909.468167 NaN NaN NaN NaN NaN NaN NaN 20.436 1 23.843 23.343 24.343 3.4074 0 0 0 0.40738 1 2120 2120 0.79363 0 1 + 47726 22989 30105 30119 55118 55118 0.009811224572672472 VHAHVYGK 8 Unmodified _VHAHVYGK_ 0 0 0 REV__L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|31|3|sense REV__L1MA4A_dup3149|chr9:87687003-87688000:-|1.59888993548671|0.0530862846197871|4.91|151.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 455.7496032714844 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 23.625 1 27.394 26.894 27.894 3.769 0 0 0 0.40738 1 2618 2618 0.79363 0 1 + 47727 25262 30106 30120 55119 55119 0.02372355165709905 VHAIFMIYV 9 Unmodified _VHAIFMIYV_ 0 0 0 MER11C_dup346|chr6:99456432-99457495:+|1.7348665776702072|0.1662231865607353|3.38|151.0|63|3|anti-sense MER11C_dup346|chr6:99456432-99457495:+|1.7348665776702072|0.1662231865607353|3.38|151.0|63|3|anti-sense MER11C_dup346|chr6:99456432-99457495:+|1.7348665776702072|0.1662231865607353|3.38|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_3 7 546.8005981445312 2 546.799163 1091.58377 NaN NaN NaN NaN NaN NaN NaN 54.755 1 58.324 57.824 58.824 3.5694 0 0 0 0.381 1 11542 11542 5.2307 0.47466 1 47728 15794 30107 30121 55120 55120 0.041644654732408526 VHAKMKKKK 9 Unmodified _VHAKMKKKK_ 0 0 0 REV__L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|24|1|anti-sense REV__L1ME3Cz_dup4593|chr6:72648273-72648826:+|2.383706550652437|0.0062973237048811|8.56|150.0|24|1|anti-sense MSMS UPN47_class_I_Rep_3 4 549.353759765625 2 549.352428 1096.6903 NaN NaN NaN NaN NaN NaN NaN 101.88 1 105.37 104.87 105.87 3.4873 0 0 0 0.4007 1 25081 25081 0.52476 0.52476 1 + 47729 28120 30108 30122 55121 55121 0.14582640758430898 VHAPLKIK 8 Unmodified _VHAPLKIK_ 0 0 0 ENST00000411807.1_1_11:5543719-5544284:-|nuORF ENST00000411807.1_1_11:5543719-5544284:-|nuORF ENST00000411807.1_1_11:5543719-5544284:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 453.2998962402344 2 453.300188 904.585822 -0.52141 -0.00023635 -0.026558 -1.2039E-05 -0.54797 -0.00024839 453.2999827294603 24.873 0.60489 28.356 27.907 28.512 3.483 69 51 2 0 0 0 0.82752 1 3283 3283 0 0 1 42548 47730 6633 30109 30123 55122 55122 0.12971262273356388 VHAWGRPWQ 9 Unmodified _VHAWGRPWQ_ 0 0 0 REV__ENST00000589969.1_1_19:3453784-3454096:+|nuORF REV__ENST00000589969.1_1_19:3453784-3454096:+|nuORF MSMS UPN47_class_I_Rep_3 4 568.7908325195312 2 568.79105 1135.56755 NaN NaN NaN NaN NaN NaN NaN 43.645 1 46.887 46.387 47.387 3.2419 0 0 0 0.39326 1 9076 9076 2.3027 0.24298 1 + 47731 23161 30110 30124 55123 55123 0.005185203513519809 VHCFNCRN 8 Unmodified _VHCFNCRN_ 0 0 0 REV__nc|ENSG00000177694|Q58DX5-2|NAALADL2 REV__nc|ENSG00000177694|Q58DX5-2|NAALADL2 MSMS UPN47_class_I_Rep_2 3 496.595458984375 2 496.713096 991.411639 NaN NaN NaN NaN NaN NaN NaN 24.417 1 27.882 27.382 28.382 3.4655 0 0 0 0.40738 1 3231 3231 0.79363 0 1 + 47732 20630 30111 30125 55124 55124 -0.08441009485920858 VHCLHPTRHT 10 Unmodified _VHCLHPTRHT_ 0 0 0 REV__L1ME2z_dup2302|chr6:16135890-16137189:-|2.677818665651327|0.4987687003331567|2.42|151.0|77|2|anti-sense REV__L1ME2z_dup2302|chr6:16135890-16137189:-|2.677818665651327|0.4987687003331567|2.42|151.0|77|2|anti-sense MSMS UPN46_class_I_Rep_3 1 600.8069458007812 2 600.806374 1199.59819 NaN NaN NaN NaN NaN NaN NaN 48.913 1 48.913 48.413 49.413 0 0 0 0 0.53105 1 10231 10231 1.4819 0 1 + 47733 27909 30112 30126 55125 55125 0.006379306740655011 VHCLPCVLP 9 Unmodified _VHCLPCVLP_ 0 0 0 REV__ENSG00000158286|ENST00000377939|RNF207 REV__ENSG00000158286|ENST00000377939|RNF207 MSMS UPN47_class_I_Rep_3 4 490.74493408203125 2 490.756441 979.498329 NaN NaN NaN NaN NaN NaN NaN 35.626 1 38.881 38.381 39.381 3.2547 0 0 0 0.381 1 6621 6621 5.2307 0 1 + 47734 19843 30113 30127 55126 55126 0.007759770159282198 VHDRYLCF 8 Unmodified _VHDRYLCF_ 0 0 0 L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|124|2|anti-sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|124|2|anti-sense L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|124|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7523803710938 2 526.752744 1051.49094 NaN NaN NaN NaN NaN NaN NaN 116.48 1 120.11 119.61 120.61 3.6312 0 0 0 0.40738 1 27722 27722 0.79363 0 1 47735 12159 30114 30128 55127 55127 -0.032750392601201384 VHESEESTL 9 Unmodified _VHESEESTL_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|90|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|90|2|sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|90|2|sense MSMS UPN48_class_I_Rep_2 6 515.54638671875 2 515.738011 1029.46147 NaN NaN NaN NaN NaN NaN NaN 29.817 1 33.449 32.949 33.949 3.6316 0 0 0 0.39428 1 4287 4287 2.0598 1.2661 1 47736 8525 30115 30129 55128 55128 -0.052083247952623424 VHESGMEEC 9 Unmodified _VHESGMEEC_ 0 0 0 REV__nc|ENSG00000163867|O95789-5|ZMYM6 REV__nc|ENSG00000163867|O95789-5|ZMYM6 MSMS UPN48_class_I_Rep_1 5 510.69122314453125 2 510.691692 1019.36883 NaN NaN NaN NaN NaN NaN NaN 116.13 1 119.76 119.26 120.26 3.6282 0 0 0 0.39428 1 28270 28270 2.0598 1.3694 1 + 47737 20011 30116 30130 55129 55129 -0.1400786912465719 VHEWSLYKD 9 Unmodified _VHEWSLYKD_ 0 0 0 L1ME3A_dup1372|chr2:28864292-28864772:+|1.208215524892102|0.1327167448685836|3.19|151.0|5|1|sense L1ME3A_dup1372|chr2:28864292-28864772:+|1.208215524892102|0.1327167448685836|3.19|151.0|5|1|sense L1ME3A_dup1372|chr2:28864292-28864772:+|1.208215524892102|0.1327167448685836|3.19|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 588.787109375 2 588.787838 1175.56112 NaN NaN NaN NaN NaN NaN NaN 66.528 1 70.036 69.536 70.536 3.5077 0 0 0 0.38784 1 15117 15117 3.5965 0 1 47738 12644 30117 30131 55130 55130 -0.019634623906767956 VHEYERSKR 9 Unmodified _VHEYERSKR_ 0 0 0 REV__ENSG00000072786.13,STK10,chr5,-,I4.1,172115145,172117480|34|22.22|2|intron REV__ENSG00000072786.13,STK10,chr5,-,I4.1,172115145,172117480|34|22.22|2|intron MSMS UPN46_class_I_Rep_3 1 401.8778991699219 3 401.879149 1202.61562 NaN NaN NaN NaN NaN NaN NaN 19.773 1 19.773 19.273 20.273 0 0 0 0 0.38299 1 1944 1944 2.7352 0.99292 1 + 47739 17834 30118 30132 55131 55131 0.022415494807319192 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN47_class_I_Rep_1 2 624.3726196289062 2 624.372207 1246.72986 0.53752 0.00033561 -0.00032174 -2.0089E-07 0.5372 0.00033541 624.3720171509258 91.605 0.57864 95.311 95.008 95.586 3.7053 155 84 2 0 0 0 0.67113 1 22815 22815 1.3295 1.3295 1 4448400 47740 4742 30119 30133 55132 55132 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN47_class_I_Rep_2 3 624.3724975585938 2 624.372207 1246.72986 0.60987 0.00038078 -0.11672 -7.2879E-05 0.49314 0.0003079 624.3719845766632 91.655 0.56226 95.116 94.831 95.393 3.4613 158 84 2 0 0 0 0.67113 1 22699 22699 1.3295 0 1 3376900 47741 4742 30119 30133 55133 55133 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN47_class_I_Rep_3 4 624.3728637695312 2 624.372207 1246.72986 0.50555 0.00031565 0.13834 8.6379E-05 0.64389 0.00040203 624.3720145575638 91.728 0.6029 95.129 94.81 95.413 3.401 158 89 2 0 0 0 0.67113 3 22901 22901;22924;22947 1.3295 1.3295 1 2059400 47742 4742 30119 30133 55134;55135;55136 55134 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN47_class_I_Rep_3 4 624.3724365234375 2 624.372207 1246.72986 0.51212 0.00031976 0.29119 0.00018181 0.80331 0.00050157 624.3721715629204 98.836 0.31271 102.27 102.02 102.33 3.4328 70 46 2 0 0 0 0.67113 1 24441 24441 1.3295 1.3295 1 536820 47743 4742 30119 30133 55137 55137 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN48_class_I_Rep_1 5 624.371826171875 2 624.372207 1246.72986 0.42935 0.00026807 -0.29917 -0.0001868 0.13017 8.1276E-05 624.3718557159842 91.443 0.83469 95.069 94.657 95.492 3.626 225 118 2 0 0 0 0.67113 3 21896 21896;22021;22050 1.3295 1.3295 1 12353000 47744 4742 30119 30133 55138;55139;55140 55138 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN48_class_I_Rep_1 5 624.3727416992188 2 624.372207 1246.72986 0.42772 0.00026706 -0.99953 -0.00062408 -0.57181 -0.00035702 624.3715515160592 92.074 0.5062 95.7 95.52 96.026 3.626 119 71 2 0 0 0 0.67113 2 22093 22093;22177 1.3295 0.13619 1 951930 47745 4742 30119 30133 55141;55142 55141 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN48_class_I_Rep_2 6 624.3721313476562 2 624.372207 1246.72986 0.49402 0.00030845 -0.38797 -0.00024224 0.10605 6.6212E-05 624.3717814378824 91.311 0.73558 95.066 94.694 95.43 3.7554 210 108 2 0 0 0 0.67113 1 21695 21695 1.3295 1.3295 1 13908000 47746 4742 30119 30133 55143 55143 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN48_class_I_Rep_2 6 624.3721923828125 2 624.372207 1246.72986 0.49406 0.00030848 -0.50683 -0.00031645 -0.012767 -7.9715E-06 624.3717595601657 98.376 0.66378 102.15 101.87 102.53 3.7707 168 94 2 0 0 0 0.56119 1 23403 23403 6.2058 1.3088 1 4608200 47747 4742 30119 30133 55144 55144 0.11636484033510897 VHFGLVRLIHG 11 Unmodified _VHFGLVRLIHG_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS UPN48_class_I_Rep_3 7 624.3712158203125 2 624.372207 1246.72986 0.60343 0.00037676 -0.82488 -0.00051503 -0.22145 -0.00013827 624.3714827044722 91.982 0.49592 95.845 95.618 96.113 3.8634 115 70 2 0 0 0 0.67113 1 21818 21818 1.3295 0.13619 1 1749400 47748 4742 30119 30133 55145 55145 0.11636484033510897 VHFKAKKI 8 Unmodified _VHFKAKKI_ 0 0 0 L1MD_dup7955|chr18:2683296-2684017:-|1.0765126357785202|0.0316422398755055|5.09|151.0|4|1|sense;L1MEf_dup1035|chr2:46724405-46726094:-|1.011674486802825|0.0168396207216177|5.91|149.0|12|1|sense L1MD_dup7955|chr18:2683296-2684017:-|1.0765126357785202|0.0316422398755055|5.09|151.0|4|1|sense L1MD_dup7955|chr18:2683296-2684017:-|1.0765126357785202|0.0316422398755055|5.09|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 485.8114929199219 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 80.857 1 84.419 83.919 84.919 3.5624 0 0 0 0.40738 1 19271 19271 0.79363 0 1 47749 11895 30120 30134 55146 55146 0.12634951164693575 VHFKVHSIL 9 Unmodified _VHFKVHSIL_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|186|2|anti-sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|186|2|anti-sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|186|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 -0.0062694 -3.3875E-06 -0.016319 -8.8173E-06 -0.022588 -1.2205E-05 540.3215768191462 25.128 0.25652 25.128 24.916 25.173 0 28 24 2 0 0 0 0.48846 1 3371 3371 1.8442 0 1 219310 47750 11311 30121 30135 55147 55147 0.09258032330808419 VHFLLPLL 8 Unmodified _VHFLLPLL_ 0 0 0 ENST00000245479.2_1_17:70121293-70121485:+|nuORF ENST00000245479.2_1_17:70121293-70121485:+|nuORF ENST00000245479.2_1_17:70121293-70121485:+|nuORF MSMS UPN46_class_I_Rep_3 1 476.3070068359375 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 66.727 1 66.727 66.227 67.227 0 0 0 0 0.40738 1 15155 15155 0.79363 0 1 47751 5907 30122 30136 55148 55148 0.11805030558900853 VHFLRNSRP 9 Unmodified _VHFLRNSRP_ 0 0 0 REV__Tigger3b_dup2031|chr5:37632037-37633199:+|1.5732190041467229|0.0116509111700786|7.08|151.0|45|3|sense REV__Tigger3b_dup2031|chr5:37632037-37633199:+|1.5732190041467229|0.0116509111700786|7.08|151.0|45|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.3170776367188 2 563.317432 1124.62031 -0.061059 -3.4396E-05 -1.0923 -0.00061533 -1.1534 -0.00064973 563.3167922811264 38.22 0.38059 41.461 41.357 41.738 3.2414 41 26 2 0 0 0 0.47197 1 7465 7465 3.5965 0 1 54532 + 47752 32732 30123 30137 55149 55149 0.0629847841416904 VHFMFRLCLI 10 Unmodified _VHFMFRLCLI_ 0 0 0 L1ME4b_dup15456|chr12:116683498-116684016:+|1.29615151617194|0.0075194494036952|7.43|137.0|24|1|anti-sense L1ME4b_dup15456|chr12:116683498-116684016:+|1.29615151617194|0.0075194494036952|7.43|137.0|24|1|anti-sense L1ME4b_dup15456|chr12:116683498-116684016:+|1.29615151617194|0.0075194494036952|7.43|137.0|24|1|anti-sense MSMS UPN48_class_I_Rep_1 5 639.84619140625 2 639.846122 1277.67769 NaN NaN NaN NaN NaN NaN NaN 31.893 1 35.427 34.927 35.927 3.5342 0 0 0 0.53105 1 4777 4777 0 0 1 47753 12890 30124 30138 55150 55150 0.04995861303905258 VHFMNGIYQV 10 Unmodified _VHFMNGIYQV_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MSMS UPN47_class_I_Rep_2 3 604.2987060546875 2 604.300059 1206.58556 NaN NaN NaN NaN NaN NaN NaN 32.458 1 35.913 35.413 36.413 3.4547 0 0 0 0.53105 1 5626 5626 1.4819 0.41044 1 47754 3623 30125 30139 55151 55151 -0.009465255088116464 VHFVTHRN 8 Unmodified _VHFVTHRN_ 0 0 0 REV__L1PA8_dup6996|chr15:92038400-92040228:+|1.197895747904586|0.0356400462162686|5.07|151.0|64|1|anti-sense REV__L1PA8_dup6996|chr15:92038400-92040228:+|1.197895747904586|0.0356400462162686|5.07|151.0|64|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 505.8013916015625 2 505.26995 1008.52535 -0.28207 -0.00014252 0.16828 8.5027E-05 -0.11379 -5.7495E-05 505.2701389230741 14.813 0.18488 14.813 14.747 14.932 0 30 22 2 0 0 0 0.72333 1 724 724 2.8892 0.58649 1 36860 + 47755 30249 30126 30140 55152 55152 0.021425449429898435 VHFWDLHW 8 Unmodified _VHFWDLHW_ 0 0 0 REV__L1PA11_dup2971|chr11:74827652-74830037:+|4.411437241502503|0.4397573818689854|3.33|151.0|138|3|anti-sense REV__L1PA11_dup2971|chr11:74827652-74830037:+|4.411437241502503|0.4397573818689854|3.33|151.0|138|3|anti-sense MSMS UPN47_class_I_Rep_2 3 570.2919311523438 2 570.274701 1138.53485 NaN NaN NaN NaN NaN NaN NaN 36.034 1 39.445 38.945 39.945 3.4114 0 0 0 0.40738 1 6713 6713 0.79363 0.10326 1 + 47756 29022 30127 30141 55153 55153 -0.02887686771487097 VHGDFPKHR 9 Unmodified _VHGDFPKHR_ 0 0 0 nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-12|SORBS1 MSMS UPN48_class_I_Rep_3 7 547.2417602539062 2 546.788507 1091.56246 NaN NaN NaN NaN NaN NaN NaN 112.18 1 115.84 115.34 116.34 3.6614 0 0 0 0.39428 1 26645 26645 2.0598 0 1 47757 16645 30128 30142 55154 55154 0.020342164887551917 VHGFLLLPY 9 Unmodified _VHGFLLLPY_ 0 0 0 L1ME1_dup2884|chr2:27589215-27590655:-|2.7911218754885847|0.1419747555160017|4.3|151.0|101|3|anti-sense L1ME1_dup2884|chr2:27589215-27590655:-|2.7911218754885847|0.1419747555160017|4.3|151.0|101|3|anti-sense L1ME1_dup2884|chr2:27589215-27590655:-|2.7911218754885847|0.1419747555160017|4.3|151.0|101|3|anti-sense MSMS UPN48_class_I_Rep_3 7 530.234130859375 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 23.576 1 27.336 26.836 27.836 3.7594 0 0 0 0.40038 1 2604 2604 0.6015 0 1 47758 12370 30129 30143 55155 55155 0.06955825207955968 VHHPKQKF 8 Unmodified _VHHPKQKF_ 0 0 0 L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|52|2|anti-sense L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|52|2|anti-sense L1MB4_dup7803|chr17:60377900-60378949:+|1.5175201432140977|0.0171256388181655|6.47|151.0|52|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.7896728515625 2 510.790518 1019.56648 -0.24334 -0.00012429 -1.3726 -0.00070112 -1.616 -0.00082541 510.78992685343206 37.902 0.52296 41.143 40.898 41.421 3.2414 58 40 2 0 0 0 0.82752 1 7264 7264 0.79363 0.10326 1 67247 47759 10585 30130 30144 55156 55156 0.057483059824676275 VHHRRIGL 8 Unmodified _VHHRRIGL_ 0 0 0 REV__ENSG00000178163|ENST00000326756|ZNF518B REV__ENSG00000178163|ENST00000326756|ZNF518B MULTI-MSMS UPN47_class_I_Rep_3 4 494.30096435546875 2 494.301585 986.588616 0.26279 0.0001299 -1.0423 -0.00051521 -0.7795 -0.00038531 494.3009632546505 89.212 0.13933 92.605 92.533 92.673 3.3931 36 17 3 0 0 0 0.82752 1 22370 22370 0.69038 0 1 670340 + 47760 20640 30131 30145 55157 55157 0.09478530450894596 VHHRRIGL 8 Unmodified _VHHRRIGL_ 0 0 0 REV__ENSG00000178163|ENST00000326756|ZNF518B REV__ENSG00000178163|ENST00000326756|ZNF518B MULTI-MATCH UPN46_class_I_Rep_3 1 2 494.301585 986.588616 0.30529 0.00015091 -1.3561 -0.00067032 -1.0508 -0.00051942 494.3007885686236 92.596 0.083847 92.596 92.548 92.631 0 -0.017465 -0.00022089 NaN 0.69038 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 302750 + 47761 20640 30131 30145 0.09478530450894596 VHIKMSVYY 9 Unmodified _VHIKMSVYY_ 0 0 0 Charlie1a_dup5626|chr21:15773671-15775033:-|1.3268938649307955|0.036403851448983|5.19|151.0|57|1|anti-sense Charlie1a_dup5626|chr21:15773671-15775033:-|1.3268938649307955|0.036403851448983|5.19|151.0|57|1|anti-sense Charlie1a_dup5626|chr21:15773671-15775033:-|1.3268938649307955|0.036403851448983|5.19|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_3 4 570.27001953125 2 570.299527 1138.5845 NaN NaN NaN NaN NaN NaN NaN 52.78 1 55.975 55.475 56.475 3.1948 0 0 0 0.32573 1 11852 11852 9.3831 0.035688 1 47762 489 30132 30146 55158 55158 0.020752601222966405 VHILEATQTC 10 Unmodified _VHILEATQTC_ 0 0 0 REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7803955078125 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 46.678 1 50.378 49.878 50.878 3.6999 0 0 0 0.53105 1 9923 9923 8.1555 1.0538 1 + 47763 25659 30133 30147 55159 55159 -0.0033882212535445433 VHILEATQTC 10 Unmodified _VHILEATQTC_ 0 0 0 REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7789916992188 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 46.69 1 50.39 49.89 50.89 3.6999 0 0 0 0.53105 1 9927 9927 2.9952 0.49676 1 + 47764 25659 30133 30147 55160 55160 -0.0033882212535445433 VHILEATQTC 10 Unmodified _VHILEATQTC_ 0 0 0 REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7798461914062 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 46.905 1 50.6 50.1 51.1 3.6951 0 0 0 0.53105 1 9993 9993 4.897 0.70751 1 + 47765 25659 30133 30147 55161 55161 -0.0033882212535445433 VHILEATQTC 10 Unmodified _VHILEATQTC_ 0 0 0 REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense MSMS UPN47_class_I_Rep_2 3 557.7794189453125 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 47.196 1 50.548 50.048 51.048 3.3515 0 0 0 0.53105 1 10111 10111 8.1555 1.0538 1 + 47766 25659 30133 30147 55162 55162 -0.0033882212535445433 VHILEATQTC 10 Unmodified _VHILEATQTC_ 0 0 0 REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense REV__L1MB1_dup3228|chrX:2350367-2350744:+|1.0080747722661083|0.0048662244192498|7.69|150.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 557.779296875 2 557.781699 1113.54884 NaN NaN NaN NaN NaN NaN NaN 47.277 1 50.521 50.021 51.021 3.2439 0 0 0 0.53105 1 10189 10189 8.1555 1.0538 1 + 47767 25659 30133 30147 55163 55163 -0.0033882212535445433 VHINAPVETL 10 Unmodified _VHINAPVETL_ 0 0 0 REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|11|2|sense REV__MLT1G3_dup1291|chr7:100342707-100343204:+|1.5968329131001384|0.4769097854750666|1.74|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 546.806396484375 2 546.806031 1091.59751 0.02121 1.1598E-05 0.20259 0.00011078 0.2238 0.00012238 546.8061295967184 29.589 0.72002 33.081 32.756 33.476 3.4923 97 58 2 0 0 0 0.56033 1 4762 4762 3.5965 0 1 87760 + 47768 31731 30134 30148 55164 55164 0.05537414506034111 VHIPEVYLI 9 Unmodified _VHIPEVYLI_ 0 0 0 ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF ENSG00000128815|ENST00000325239|WDFY4 ENSG00000128815|ENST00000325239|WDFY4 MSMS UPN48_class_I_Rep_1 5 541.81640625 2 541.815867 1081.61718 NaN NaN NaN NaN NaN NaN NaN 71.623 1 75.089 74.589 75.589 3.466 0 0 0 0.37476 1 16758 16758 6.7232 0.36906 1 47769 2602 30135 30149 55165 55165 0.07963790516805602 VHKGHLMRI 9 Unmodified _VHKGHLMRI_ 0 0 0 REV__ENSG00000139354|ENST00000547754|GAS2L3 REV__ENSG00000139354|ENST00000547754|GAS2L3 MSMS UPN47_class_I_Rep_1 2 546.2391357421875 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 117.31 1 120.92 120.42 121.42 3.6036 0 0 0 0.4029 1 29080 29080 0 0 1 + 47770 19311 30136 30150 55166 55166 0.08172610547489967 VHKKVLNN 8 Unmodified _VHKKVLNN_ 0 0 0 L1MB2_dup5657|chr11:59587521-59588251:+|1.821994982639908|0.1584568683491777|3.52|151.0|14|2|sense L1MB2_dup5657|chr11:59587521-59588251:+|1.821994982639908|0.1584568683491777|3.52|151.0|14|2|sense L1MB2_dup5657|chr11:59587521-59588251:+|1.821994982639908|0.1584568683491777|3.52|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 476.2771911621094 2 476.290351 950.566149 -0.38906 -0.00018531 -0.54839 -0.00026119 -0.93745 -0.0004465 476.29013108776746 13.786 0.23493 17.243 17.179 17.413 3.457 32 28 2 0 0 0 0.82752 1 442 442 0.69038 0 1 46824 47771 10264 30137 30151 55167 55167 0.08888886262604956 VHKNTLDL 8 Unmodified _VHKNTLDL_ 0 0 0 L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|99|1|anti-sense L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|99|1|anti-sense L1MB8_dup3859|chr4:77812459-77814400:+|3.6386982999803785|0.1511857470594289|4.59|151.0|99|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 470.2673645019531 2 470.266542 938.51853 -0.36764 -0.00017289 0.11267 5.2986E-05 -0.25497 -0.0001199 470.26661309477896 23.085 0.54596 26.789 26.556 27.102 3.7042 93 50 2 0 0 0 0.82752 1 2858 2858 11.64 0 1 132330 47772 10997 30138 30152 55168 55168 0.0468118727176261 VHKPLHFL 8 Unmodified _VHKPLHFL_ 0 0 0 REV__ENST00000299237.2_1_16:58031894-58032311:-|nuORF REV__ENST00000299237.2_1_16:58031894-58032311:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.79583740234375 2 495.797812 989.581071 NaN NaN NaN NaN NaN NaN NaN 75.244 1 78.49 77.99 78.99 3.2464 0 0 0 0.40604 1 18656 18656 2.5775 1.7838 1 + 47773 21665 30139 30153 55169 55169 0.0858637813059886 VHKQQQKK 8 Unmodified _VHKQQQKK_ 0 0 0 REV__HAL1_dup4036|chr2:241705712-241706347:-|1.073073810959894|0.0759747496836809|3.82|151.0|17|3|sense REV__HAL1_dup4036|chr2:241705712-241706347:-|1.073073810959894|0.0759747496836809|3.82|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.3060302734375 2 512.306532 1022.59851 -0.25602 -0.00013116 -0.29534 -0.00015131 -0.55137 -0.00028247 512.3062706371177 14.845 0.17004 18.32 18.223 18.393 3.475 30 18 2 0 0 0 0.82752 1 664 664 2.5775 0 1 24056 + 47774 23420 30140 30154 55170 55170 0.08811673665616127 VHKSPKKK 8 Unmodified _VHKSPKKK_ 0 0 0 L1MC4_dup1898|chr1:246624956-246625406:-|1.62412046642873|0.0260764819084627|5.96|151.0|22|2|anti-sense L1MC4_dup1898|chr1:246624956-246625406:-|1.62412046642873|0.0260764819084627|5.96|151.0|22|2|anti-sense L1MC4_dup1898|chr1:246624956-246625406:-|1.62412046642873|0.0260764819084627|5.96|151.0|22|2|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3064880371094 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 64.543 1 64.543 64.043 65.043 0 0 0 0 0.40604 1 14533 14533 2.5775 0 1 47775 11427 30141 30155 55171 55171 0.12525763159328562 VHKSVRGIG 9 Unmodified _VHKSVRGIG_ 0 0 0 REV__ENSG00000203740|ENST00000439373|NTMT2 REV__ENSG00000203740|ENST00000439373|NTMT2 MSMS UPN46_class_I_Rep_3 1 476.7880859375 2 476.787976 951.561398 NaN NaN NaN NaN NaN NaN NaN 12.28 1 12.28 11.78 12.78 0 0 0 0 0.4029 1 70 70 0 0 1 + 47776 21174 30142 30156 55172 55172 0.08368002119868834 VHLEIQLL 8 Unmodified _VHLEIQLL_ 0 0 0 L1PA3_dup3473|chr5:70955953-70958810:-|3.084874909169926|0.491035729474781|2.65|149.0|137|2|anti-sense REV__L1MB8_dup3130|chr3:122829737-122831778:+|1.3312548589438362|0.0332257408760892|5.32|151.0|126|2|anti-sense REV__L1MB8_dup3130|chr3:122829737-122831778:+|1.3312548589438362|0.0332257408760892|5.32|151.0|126|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7955017089844 2 482.794935 963.575317 -0.026742 -1.2911E-05 1.4158 0.00068352 1.389 0.00067061 482.79546281140694 28.206 0.11183 28.206 28.13 28.242 0 11 7 2 0 0 0 0.82752 1 4292 4292 2.3027 0 1 91014 47777 14256 30143 30157 55173 55173 0.09207234828284072 VHLGQGQGHR 10 Unmodified _VHLGQGQGHR_ 0 0 0 REV__L1PA4_dup3285|chr4:139707051-139708660:-|1.4289322940148397|0.2401590248659717|2.57|151.0|26|2|sense REV__L1PA4_dup3285|chr4:139707051-139708660:-|1.4289322940148397|0.2401590248659717|2.57|151.0|26|2|sense MSMS UPN47_class_I_Rep_1 2 544.302978515625 2 544.789038 1087.56352 NaN NaN NaN NaN NaN NaN NaN 22.13 1 25.804 25.304 26.304 3.6749 0 0 0 0.53105 1 2519 2519 1.6526 0 1 + 47778 29625 30144 30158 55174 55174 0.0232443085765226 VHLHCVPV 8 Unmodified _VHLHCVPV_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|266|1|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|266|1|anti-sense MSMS UPN46_class_I_Rep_3 1 452.2693176269531 2 452.247098 902.479642 NaN NaN NaN NaN NaN NaN NaN 68.82 1 68.82 68.32 69.32 0 0 0 0 0.40738 1 15734 15734 0.79363 0 1 + 47779 25092 30145 30159 55175 55175 0.024501834363945818 VHLLIKIQF 9 Unmodified _VHLLIKIQF_ 0 0 0 REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|65|3|anti-sense REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|65|3|anti-sense MSMS UPN46_class_I_Rep_3 1 555.7733154296875 2 555.855327 1109.6961 NaN NaN NaN NaN NaN NaN NaN 106.48 1 106.48 105.98 106.98 0 0 0 0 0.4007 1 25965 25965 0.52476 0 1 + 47780 27569 30146 30160 55176 55176 0.1456406254171725 VHLLKFFFI 9 Unmodified _VHLLKFFFI_ 0 0 0 L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 582.3527221679688 2 582.35242 1162.69029 0.51827 0.00030181 1.6605 0.00096699 2.1788 0.0012688 582.3532763251969 99.895 0.19778 99.895 99.78 99.978 0 27 20 2 0 0 0 0.50015 1 24359 24359 0.6015 0 1 342970 47781 14137 30147 30161 55177 55177 0.11544964030076699 VHLLKFFFI 9 Unmodified _VHLLKFFFI_ 0 0 0 L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense L1PA16_dup944|chr2:8951505-8955619:-|3.2471181155328046|0.0872701952259848|5.22|151.0|153|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 582.35242 1162.69029 0.49276 0.00028696 1.712 0.00099701 2.2048 0.001284 582.3532613096152 96.015 0.3089 99.923 99.847 100.16 3.9084 0.013949 1.6937E-05 NaN 0.6015 68 43 3 NaN NaN NaN NaN 0 NaN NaN 0 346590 47782 14137 30147 30161 0.11544964030076699 VHLMTSFQTV 10 Unmodified _VHLMTSFQTV_ 0 0 0 L1MC3_dup9076|chr11:116973561-116974168:+|1.32174901333568|0.008614279850413|7.26|151.0|8|2|sense L1MC3_dup9076|chr11:116973561-116974168:+|1.32174901333568|0.008614279850413|7.26|151.0|8|2|sense L1MC3_dup9076|chr11:116973561-116974168:+|1.32174901333568|0.008614279850413|7.26|151.0|8|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.7980346679688 2 581.799891 1161.58523 0.49887 0.00029024 -3.2593 -0.0018963 -2.7604 -0.001606 581.7975673361994 66.765 0.3379 70.251 70.077 70.415 3.4866 27 21 2 0 0 0 0.53004 1 15324 15324 8.1555 0.54658 1 161650 47783 11385 30148 30162 55178 55178 0.010900547713390552 VHLPRRLKV 9 Unmodified _VHLPRRLKV_ 0 0 0 ENSG00000163961.4,RNF168,chr3,-,I3.1,196483892,196487398|104|10.33|2|intron ENSG00000163961.4,RNF168,chr3,-,I3.1,196483892,196487398|104|10.33|2|intron ENSG00000163961.4,RNF168,chr3,-,I3.1,196483892,196487398|104|10.33|2|intron MSMS UPN48_class_I_Rep_1 5 559.3695678710938 2 559.369467 1116.72438 NaN NaN NaN NaN NaN NaN NaN 98.149 1 101.76 101.26 102.26 3.6065 0 0 0 0.4007 1 23680 23680 0.52476 0 1 47784 4064 30149 30163 55179 55179 0.1706880524168355 VHLQLKKK 8 Unmodified _VHLQLKKK_ 0 0 0 L1ME3B_dup6918|chr16:10460316-10461706:+|3.006427593991777|0.3578004603775897|3.07|151.0|18|1|sense L1ME3B_dup6918|chr16:10460316-10461706:+|3.006427593991777|0.3578004603775897|3.07|151.0|18|1|sense L1ME3B_dup6918|chr16:10460316-10461706:+|3.006427593991777|0.3578004603775897|3.07|151.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 497.33221435546875 2 497.332019 992.649485 NaN NaN NaN NaN NaN NaN NaN 116.5 1 120 119.5 120.5 3.4965 0 0 0 0.40746 1 28445 28445 0.69038 0 1 47785 12731 30150 30164 55180 55180 0.15286622710448228 VHLTFFIFW 9 Unmodified _VHLTFFIFW_ 0 0 0 L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|47|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|47|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|47|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 604.9574584960938 2 605.326402 1208.63825 0.44564 0.00026976 2.4946 0.00151 2.9402 0.0017798 605.8296422749 29.829 0.063087 33.558 33.504 33.567 3.7286 9 6 2 0 0 0 0.12281 1 4226 4226 4.3292 0 1 37750 47786 12950 30151 30165 55181 55181 0.042278006163314785 VHLTNRVRV 9 Unmodified _VHLTNRVRV_ 0 0 0 REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense MSMS UPN46_class_I_Rep_3 1 547.332275390625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 88.817 1 88.817 88.317 89.317 0 0 0 0 0.4007 1 21345 21345 0.52476 0 1 + 47787 31602 30152 30166 55182 55182 0.10899051448268438 VHLTNRVRV 9 Unmodified _VHLTNRVRV_ 0 0 0 REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense MSMS UPN46_class_I_Rep_3 1 547.3323364257812 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 106.03 1 106.03 105.53 106.53 0 0 0 0 0.4007 1 25858 25858 0.52476 0 1 + 47788 31602 30152 30166 55183 55183 0.10899051448268438 VHLTNRVRV 9 Unmodified _VHLTNRVRV_ 0 0 0 REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3324584960938 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 85.264 1 88.855 88.355 89.355 3.5914 0 0 0 0.4007 1 21294 21294 0.52476 0 1 + 47789 31602 30152 30166 55184 55184 0.10899051448268438 VHLTNRVRV 9 Unmodified _VHLTNRVRV_ 0 0 0 REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 547.332275390625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 70.325 1 73.608 73.108 74.108 3.2828 0 0 0 0.4007 1 17129 17129 0.52476 0 1 + 47790 31602 30152 30166 55185 55185 0.10899051448268438 VHLTNRVRV 9 Unmodified _VHLTNRVRV_ 0 0 0 REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3340454101562 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 73.306 1 76.787 76.287 77.287 3.4812 0 0 0 0.39598 1 17265 17265 1.6526 0 1 + 47791 31602 30152 30166 55186 55186 0.10899051448268438 VHLTNRVRV 9 Unmodified _VHLTNRVRV_ 0 0 0 REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense REV__MLT1A0-int_dup352|chr5:70816279-70816980:-|1.55434823773353|0.0496296303840722|4.97|143.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 547.3329467773438 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 75.066 1 78.656 78.156 79.156 3.59 0 0 0 0.4007 1 17691 17691 0.52476 0 1 + 47792 31602 30152 30166 55187 55187 0.10899051448268438 VHMLVPSR 8 Unmodified _VHMLVPSR_ 0 0 0 ENST00000501855.6_1_5:180257966-180258903:+|nuORF ENST00000501855.6_1_5:180257966-180258903:+|nuORF ENST00000501855.6_1_5:180257966-180258903:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 469.7656555175781 2 469.765655 937.516756 0.14306 6.7204E-05 -0.036059 -1.6939E-05 0.107 5.0265E-05 469.7653880991032 41.729 0.27794 45.48 45.41 45.688 3.7509 45 30 2 0 0 0 0.82752 1 7669 7669 5.7604 0.52976 1 113720 47793 7131 30153 30167 55188 55188 0.04549854982155921 VHNARKKP 8 Unmodified _VHNARKKP_ 0 0 0 L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 475.2885437011719 2 475.288143 948.561733 -0.39367 -0.0001871 0.49038 0.00023307 0.096713 4.5967E-05 475.28837496352133 12.938 0.30843 16.388 16.317 16.626 3.45 37 25 3 0 0 0 0.82752 1 204 204 4.756 0 1 49914 47794 11239 30154 30168 55189 55189 0.08539421839702754 VHNARKKP 8 Unmodified _VHNARKKP_ 0 0 0 L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 475.288143 948.561733 -0.27547 -0.00013093 0.40831 0.00019407 0.13284 6.3136E-05 475.2882687918935 12.97 0.17271 16.358 16.323 16.495 3.388 -0.018261 -0.00014263 NaN 4.756 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 34649 47795 11239 30154 30168 0.08539421839702754 VHNARKKP 8 Unmodified _VHNARKKP_ 0 0 0 L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense L1MC2_dup230|chr1:146945621-146946282:-|1.195519932515291|0.1038502679671842|3.53|151.0|19|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 475.288143 948.561733 -0.85277 -0.00040531 0.82728 0.0003932 -0.025489 -1.2115E-05 475.28852586332687 13.01 0.15742 16.383 16.313 16.47 3.3734 0.0068897 0.00025563 NaN 4.756 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 33199 47796 11239 30154 30168 0.08539421839702754 VHNLRPLN 8 Unmodified _VHNLRPLN_ 0 0 0 REV__L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|77|2|sense REV__L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|77|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7796936035156 2 481.780151 961.545748 -0.20382 -9.8197E-05 -0.42282 -0.00020371 -0.62664 -0.0003019 481.7798419466246 21.963 0.83426 25.387 25.139 25.973 3.4241 114 84 2 0 0 0 0.82752 1 2544 2544 4.756 0 1 83028 + 47797 24960 30155 30169 55190 55190 0.06343715602781685 VHPDGVRV 8 Unmodified _VHPDGVRV_ 0 0 0 ENSG00000149499|ENST00000394773|EML3;nc|ENSG00000149499|Q32P44-2|EML3 ENSG00000149499|ENST00000394773|EML3 ENSG00000149499|ENST00000394773|EML3 MULTI-SECPEP UPN47_class_I_Rep_2 3 439.885986328125 2 439.745776 877.477 -0.69599 -0.00030606 -0.98025 -0.00043106 -1.6762 -0.00073712 439.7452988406447 26.492 0.45459 29.986 29.746 30.2 3.4945 54 43 2 0 0 0 0.72333 1 3780 3780 2.0598 1.2661 1 72795 47798 3544 30156 30170 55191 55191 0.03336051303097065 VHPDSEAG 8 Unmodified _VHPDSEAG_ 0 0 0 REV__nc|ENSG00000164889|P04920-2|SLC4A2 REV__nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS UPN46_class_I_Rep_3 1 406.1825256347656 2 406.182675 810.350796 -0.40609 -0.00016495 0.23808 9.6705E-05 -0.16801 -6.8243E-05 406.1826665633863 20.389 0.99755 20.389 20.114 21.111 0 160 107 3 0 0 0 0.82752 1 2141 2141 13.508 0 1 262520 + 47799 20092 30157 30171 55192 55192 -0.06196499992847748 VHPHASFQA 9 Unmodified _VHPHASFQA_ 0 0 0 ENST00000549319.2_1_1:221052998-221053868:+|nuORF;ENSG00000136630|ENST00000366903|HLX ENST00000549319.2_1_1:221052998-221053868:+|nuORF ENST00000549319.2_1_1:221052998-221053868:+|nuORF MSMS UPN46_class_I_Rep_3 1 497.2461242675781 2 497.248683 992.482814 NaN NaN NaN NaN NaN NaN NaN 14.67 1 14.67 14.17 15.17 0 0 0 0 0.39598 1 690 690 1.6526 0.85899 1 47800 2980 30158 30172 55193 55193 -0.013728501852483532 VHPVAELLEI 10 Unmodified _VHPVAELLEI_ 0 0 0 REV__nc|ENSG00000166783|Q9Y4F3-4|MARF1 REV__nc|ENSG00000166783|Q9Y4F3-4|MARF1 MULTI-MSMS UPN48_class_I_Rep_2 6 560.32470703125 2 560.324057 1118.63356 0.48925 0.00027414 -0.08106 -4.542E-05 0.4082 0.00022872 560.3240427457232 70.091 0.5113 73.627 73.358 73.87 3.5359 49 32 2 0 0 0 0.51003 1 16281 16281 10.824 10.824 1 214720 + 47801 20187 30159 30173 55194 55194 0.07898871682891695 VHPVCGFF 8 Unmodified _VHPVCGFF_ 0 0 0 REV__L1MEg_dup9977|chr11:43467780-43468269:+|1.762785662382815|0.1172016794770756|3.91|151.0|33|3|anti-sense REV__L1MEg_dup9977|chr11:43467780-43468269:+|1.762785662382815|0.1172016794770756|3.91|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_2 3 453.21881103515625 2 453.220549 904.426544 NaN NaN NaN NaN NaN NaN NaN 28.305 1 31.804 31.304 32.304 3.4986 0 0 0 0.40581 1 4373 4373 2.8892 0.31174 1 + 47802 28791 30160 30174 55195 55195 -0.029491943462630843 VHQRKRGI 8 Unmodified _VHQRKRGI_ 0 0 0 L1PA16_dup9390|chr10:30964832-30965929:+|1.069132502466275|0.0629637723996904|4.09|151.0|8|1|sense L1PA16_dup9390|chr10:30964832-30965929:+|1.069132502466275|0.0629637723996904|4.09|151.0|8|1|sense L1PA16_dup9390|chr10:30964832-30965929:+|1.069132502466275|0.0629637723996904|4.09|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 497.3085021972656 2 497.306867 992.599181 NaN NaN NaN NaN NaN NaN NaN 86.184 1 86.184 85.684 86.684 0 0 0 0 0.40746 1 20599 20599 0.69038 0 1 47803 14133 30161 30175 55196 55196 0.10258513105327438 VHRRRPLE 8 Unmodified _VHRRRPLE_ 0 0 0 ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF ENST00000418304.1_3_1:235490262-235491379:-|nuORF MSMS UPN47_class_I_Rep_2 3 531.81689453125 2 531.817599 1061.62064 NaN NaN NaN NaN NaN NaN NaN 81.701 1 85.085 84.585 85.585 3.3839 0 0 0 0.40746 1 20355 20355 0.69038 0 1 47804 6664 30162 30176 55197 55197 0.09229898134026371 VHRRYQYL 8 Unmodified _VHRRYQYL_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MULTI-MSMS UPN46_class_I_Rep_3 1 567.8115234375 2 567.811982 1133.60941 0.41394 0.00023504 -1.078 -0.00061208 -0.66403 -0.00037704 567.811360516591 68.787 0.083786 68.787 68.764 68.848 0 8 5 2 0 0 0 0.82752 1 15732 15732 8.5933 3.3626 1 366090 47805 2641 30163 30177 55198 55198 0.04795076039886226 VHRRYQYL 8 Unmodified _VHRRYQYL_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MSMS UPN47_class_I_Rep_3 4 567.8109130859375 2 567.811982 1133.60941 NaN NaN NaN NaN NaN NaN NaN 63.79 1 66.964 66.464 67.464 3.1741 0 0 0 0.39819 1 15212 15212 8.5933 3.3626 1 47806 2641 30163 30177 55199 55199 0.04795076039886226 VHRSVSLSPVL 11 Unmodified _VHRSVSLSPVL_ 0 0 0 MLT1K_dup7735|chr7:139963683-139964082:-|2.491124926109704|0.0534891671000247|5.54|151.0|25|3|anti-sense MLT1K_dup7735|chr7:139963683-139964082:-|2.491124926109704|0.0534891671000247|5.54|151.0|25|3|anti-sense MLT1K_dup7735|chr7:139963683-139964082:-|2.491124926109704|0.0534891671000247|5.54|151.0|25|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.85595703125 2 597.35368 1192.69281 0.57508 0.00034353 2.5153 0.0015025 3.0904 0.001846 597.8556127195611 86.895 0.28351 86.895 86.765 87.049 0 59 27 3 0 0 0 0.65559 1 20808 20808 2.7352 0 1 253820 47807 16482 30164 30178 55200 55200 0.10416767697097384 VHSIPEEFK 9 Unmodified _VHSIPEEFK_ 0 0 0 MER20B_dup3407|chr16:11734841-11735531:+|1.0944103861004857|0.0240634404826137|5.51|151.0|2|1|sense MER20B_dup3407|chr16:11734841-11735531:+|1.0944103861004857|0.0240634404826137|5.51|151.0|2|1|sense MER20B_dup3407|chr16:11734841-11735531:+|1.0944103861004857|0.0240634404826137|5.51|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 543.2850341796875 2 543.284931 1084.55531 NaN NaN NaN NaN NaN NaN NaN 43.097 1 46.858 46.358 47.358 3.7617 0 0 0 0.38478 1 8059 8059 4.3292 0 1 47808 15843 30165 30179 55201 55201 0.016414390976706272 VHSWSGVVL 9 Unmodified _VHSWSGVVL_ 0 0 0 REV__ENST00000573267.1_3_16:74729645-74734760:-|nuORF REV__ENST00000573267.1_3_16:74729645-74734760:-|nuORF MSMS UPN47_class_I_Rep_1 2 492.2688293457031 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 64.568 1 67.924 67.424 68.424 3.3557 0 0 0 0.38639 1 15347 15347 3.9444 0 1 + 47809 23097 30166 30180 55202 55202 0.03165491134382137 VHSWSGVVL 9 Unmodified _VHSWSGVVL_ 0 0 0 REV__ENST00000573267.1_3_16:74729645-74734760:-|nuORF REV__ENST00000573267.1_3_16:74729645-74734760:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 492.2689514160156 2 492.269084 982.523616 0.27396 0.00013486 -0.21006 -0.00010341 0.063899 3.1455E-05 492.2690037883244 64.727 0.56663 68.236 67.904 68.471 3.5083 56 47 2 0 0 0 0.46869 1 14556 14556 3.9444 0 1 72055 + 47810 23097 30166 30180 55203 55203 0.03165491134382137 VHTCLIYNY 9 Unmodified _VHTCLIYNY_ 0 0 0 L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|72|3|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|72|3|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|72|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.275390625 2 563.273509 1124.53247 0.073507 4.1404E-05 1.6108 0.00090733 1.6843 0.00094874 563.274411650335 42.211 0.361 45.45 45.29 45.651 3.2394 39 26 2 0 0 0 0.42249 1 8674 8674 6.7232 0 1 66991 47811 11446 30167 30181 55204 55204 -0.024819032914592754 VHTKVKGI 8 Unmodified _VHTKVKGI_ 0 0 0 nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 MSMS UPN48_class_I_Rep_2 6 441.2977600097656 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 72.285 1 75.849 75.349 76.349 3.5645 0 0 0 0.40738 1 16908 16908 0.79363 0 1 47812 1327 30168 30182 55205 55205 0.10438385376664883 VHTPPGPEA 9 Unmodified _VHTPPGPEA_ 0 0 0 ENST00000476163.5_1_1:6947993-6948239:+|nuORF ENST00000476163.5_1_1:6947993-6948239:+|nuORF ENST00000476163.5_1_1:6947993-6948239:+|nuORF MSMS UPN48_class_I_Rep_1 5 452.7303466796875 2 452.729792 903.445031 NaN NaN NaN NaN NaN NaN NaN 105.23 1 108.85 108.35 109.35 3.6247 0 0 0 0.36505 1 25352 25352 7.2892 2.0586 1 47813 6964 30169 30183 55206 55206 -0.010553611707223354 VHVCHWAH 8 Unmodified _VHVCHWAH_ 0 0 0 L1MEf_dup11103|chr19:16222845-16223549:-|1.577949997244223|0.1240965143174223|3.67|151.0|47|3|anti-sense L1MEf_dup11103|chr19:16222845-16223549:-|1.577949997244223|0.1240965143174223|3.67|151.0|47|3|anti-sense L1MEf_dup11103|chr19:16222845-16223549:-|1.577949997244223|0.1240965143174223|3.67|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_1 5 495.04315185546875 2 494.732146 987.449739 NaN NaN NaN NaN NaN NaN NaN 37.225 1 40.732 40.232 41.232 3.507 0 0 0 0.40738 1 6306 6306 0.79363 0 1 47814 13238 30170 30184 55207 55207 -0.04448755508951763 VHVGPSEP 8 Unmodified _VHVGPSEP_ 0 0 0 L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 411.2109680175781 2 411.211235 820.407917 0.094847 3.9002E-05 -0.43901 -0.00018053 -0.34416 -0.00014152 411.21090445042233 109.23 0.49731 112.84 112.68 113.18 3.6046 139 56 4 0 0 0 0.82752 1 26918 26918 0.79363 0 1 21211000 47815 14252 30171 30185 55208 55208 -0.009470327164763148 VHVGPSEP 8 Unmodified _VHVGPSEP_ 0 0 0 L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 411.211235 820.407917 0.094847 3.9002E-05 -0.43901 -0.00018053 -0.34416 -0.00014152 411.21090445042233 109.23 0.49731 112.84 112.68 113.18 3.6046 0.0059118 -5.3561E-06 NaN 0.79363 139 56 4 NaN NaN NaN NaN 0 NaN NaN 0 21211000 47816 14252 30171 30185 -0.009470327164763148 VHVGPSEP 8 Unmodified _VHVGPSEP_ 0 0 0 L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 411.211235 820.407917 -0.41216 -0.00016948 -0.12142 -4.993E-05 -0.53358 -0.00021941 411.2110170101778 109.12 0.064537 112.65 112.62 112.69 3.5307 -0.18517 0.00025583 NaN 0.79363 19 7 3 NaN NaN NaN NaN 0 NaN NaN 0 9334700 47817 14252 30171 30185 -0.009470327164763148 VHVGPSEP 8 Unmodified _VHVGPSEP_ 0 0 0 L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 411.211235 820.407917 0.082175 3.3791E-05 -0.49027 -0.00020161 -0.4081 -0.00016781 411.21086783071405 109.25 0.45453 112.92 112.75 113.2 3.6715 0.089873 -4.7517E-05 NaN 0.79363 137 59 4 NaN NaN NaN NaN 0 NaN NaN 0 17884000 47818 14252 30171 30185 -0.009470327164763148 VHVGPSEP 8 Unmodified _VHVGPSEP_ 0 0 0 L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense L1PA3_dup3168|chr5:74706306-74712443:+|2.23816974283291|0.3040757247618811|2.88|151.0|233|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 411.211235 820.407917 0.096593 3.972E-05 -0.57942 -0.00023826 -0.48283 -0.00019854 411.21088078707396 109.24 0.4341 112.91 112.77 113.21 3.6751 0.07701 -0.00012084 NaN 0.79363 145 58 3 NaN NaN NaN NaN 0 NaN NaN 0 18373000 47819 14252 30171 30185 -0.009470327164763148 VHVHPVHR 8 Unmodified _VHVHPVHR_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MSMS UPN47_class_I_Rep_1 2 490.7690124511719 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 75.594 1 78.997 78.497 79.497 3.4034 0 0 0 0.40738 1 18668 18668 0.79363 0 1 47820 1393 30172 30186 55209 55209 0.05582555042508375 VHVHPVHR 8 Unmodified _VHVHPVHR_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MSMS UPN47_class_I_Rep_3 4 490.7503967285156 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 40.491 1 43.728 43.228 44.228 3.2372 0 0 0 0.40738 1 8115 8115 0.79363 0 1 47821 1393 30172 30186 55210 55210 0.05582555042508375 VHVHPVHR 8 Unmodified _VHVHPVHR_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MSMS UPN47_class_I_Rep_3 4 490.7830505371094 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 55.318 1 58.496 57.996 58.996 3.1779 0 0 0 0.40738 1 12632 12632 0.79363 0 1 47822 1393 30172 30186 55211 55211 0.05582555042508375 VHVHPVHR 8 Unmodified _VHVHPVHR_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MSMS UPN48_class_I_Rep_3 7 490.78082275390625 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 31.661 1 35.363 34.863 35.863 3.7015 0 0 0 0.40738 1 4716 4716 0.79363 0 1 47823 1393 30172 30186 55212 55212 0.05582555042508375 VHVHSKEE 8 Unmodified _VHVHSKEE_ 0 0 0 REV__L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|1|1|sense REV__L1MC_dup6561|chr14:91210569-91211816:+|1.3339420807382287|0.0409246734503996|5.03|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 482.7463073730469 2 482.745973 963.477394 NaN NaN NaN NaN NaN NaN NaN 119.8 1 123.4 122.9 123.9 3.6036 0 0 0 0.40738 1 29782 29782 0.79363 0 1 + 47824 26475 30173 30187 55213 55213 -0.005805737677064826 VHVHTHFS 8 Unmodified _VHVHTHFS_ 0 0 0 REV__L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|59|1|anti-sense REV__L1PB4_dup2262|chr5:80160561-80162372:-|8.082070194002975|0.4467201460677495|4.18|151.0|59|1|anti-sense MSMS UPN47_class_I_Rep_2 3 482.244140625 2 482.243401 962.472249 NaN NaN NaN NaN NaN NaN NaN 115.67 1 119.17 118.67 119.67 3.4965 0 0 0 0.40738 1 28211 28211 0.79363 0 1 + 47825 30577 30174 30188 55214 55214 -0.01048832839660463 VHVHVYLL 8 Unmodified _VHVHVYLL_ 0 0 0 Charlie1a_dup568|chr2:28762301-28763493:-|4.668405303496956|0.3819213881622336|3.61|151.0|82|3|anti-sense Charlie1a_dup568|chr2:28762301-28763493:-|4.668405303496956|0.3819213881622336|3.61|151.0|82|3|anti-sense Charlie1a_dup568|chr2:28762301-28763493:-|4.668405303496956|0.3819213881622336|3.61|151.0|82|3|anti-sense MSMS UPN47_class_I_Rep_3 4 490.30230712890625 2 490.28982 978.565087 NaN NaN NaN NaN NaN NaN NaN 70.741 1 73.952 73.452 74.452 3.2113 0 0 0 0.40738 1 17322 17322 0.79363 0 1 47826 490 30175 30189 55215 55215 0.07494671893698523 VHVLLEKWH 9 Unmodified _VHVLLEKWH_ 0 0 0 Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|81|1|anti-sense Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|81|1|anti-sense Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_3 4 580.8338012695312 2 580.832383 1159.65021 NaN NaN NaN NaN NaN NaN NaN 37.568 1 40.811 40.311 41.311 3.2428 0 0 0 0.40038 1 7219 7219 0.6015 0 1 47827 33162 30176 30190 55216 55216 0.07677417359514038 VHVPGHRR 8 Unmodified _VHVPGHRR_ 0 0 0 nc|ENSG00000144485|Q96HZ4-2|HES6 nc|ENSG00000144485|Q96HZ4-2|HES6 nc|ENSG00000144485|Q96HZ4-2|HES6 MSMS UPN46_class_I_Rep_3 1 479.2767639160156 2 479.278109 956.541666 NaN NaN NaN NaN NaN NaN NaN 76.076 1 76.076 75.576 76.576 0 0 0 0 0.40738 1 17726 17726 0.79363 0 1 47828 16702 30177 30191 55217 55217 0.061656708997588794 VHVQVSYMY 9 Unmodified _VHVQVSYMY_ 0 0 0 L1PA16_dup10831|chr12:82958385-82960802:+|1.2695031803681227|0.0573318096731691|4.47|147.0|138|3|anti-sense L1PA16_dup10831|chr12:82958385-82960802:+|1.2695031803681227|0.0573318096731691|4.47|147.0|138|3|anti-sense L1PA16_dup10831|chr12:82958385-82960802:+|1.2695031803681227|0.0573318096731691|4.47|147.0|138|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.275634765625 2 563.273509 1124.53247 0.073507 4.1404E-05 1.6108 0.00090733 1.6843 0.00094874 563.274411650335 42.211 0.361 45.45 45.29 45.651 3.2394 39 26 2 0 0 0 0.41259 1 8624 8624 7.2892 2.5332 1 66991 47829 14019 30178 30192 55218 55218 -0.02481903291436538 VHVRINIP 8 Unmodified _VHVRINIP_ 0 0 0 REV__L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|186|1|anti-sense REV__L1PA6_dup2298|chr6:11298871-11304963:+|5.713262990240231|0.3177195169102715|4.17|151.0|186|1|anti-sense MSMS UPN46_class_I_Rep_3 1 474.28253173828125 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 34.243 1 34.243 33.743 34.743 0 0 0 0 0.40625 1 6090 6090 2.3027 0 1 + 47830 29548 30179 30193 55219 55219 0.09581190125220473 VHVRKLSK 8 Unmodified _VHVRKLSK_ 0 0 0 L1MEc_dup3988|chr3:121779075-121780426:-|1.1658522120267798|0.0943819518800576|3.63|151.0|22|2|sense L1MEc_dup3988|chr3:121779075-121780426:-|1.1658522120267798|0.0943819518800576|3.63|151.0|22|2|sense L1MEc_dup3988|chr3:121779075-121780426:-|1.1658522120267798|0.0943819518800576|3.63|151.0|22|2|sense MSMS UPN48_class_I_Rep_3 7 483.8153991699219 2 483.813993 965.613434 NaN NaN NaN NaN NaN NaN NaN 19.961 1 23.582 23.082 24.082 3.6215 0 0 0 0.40746 1 1609 1609 0.69038 0 1 47831 13095 30180 30194 55220 55220 0.12925165533602012 VHVVRQDKV 9 Unmodified _VHVVRQDKV_ 0 0 0 REV__L1PA5_dup7821|chr10:76475372-76479052:+|2.759362032487876|0.0317196916567978|6.44|151.0|132|1|anti-sense REV__L1PA5_dup7821|chr10:76475372-76479052:+|2.759362032487876|0.0317196916567978|6.44|151.0|132|1|anti-sense MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.31964 1078.62473 NaN NaN NaN NaN NaN NaN NaN 25.973 1 25.973 25.473 26.473 0 0 0 0 0.39428 1 3645 3645 2.0598 0 1 + 47832 29797 30181 30195 55221 55221 0.0885594283708997 VHVWLDEY 8 Unmodified _VHVWLDEY_ 0 0 0 ENSG00000106648|ENST00000392800|GALNTL5 ENSG00000106648|ENST00000392800|GALNTL5 ENSG00000106648|ENST00000392800|GALNTL5 MULTI-MSMS UPN46_class_I_Rep_3 1 531.3018188476562 2 530.758549 1059.50255 0.28951 0.00015366 -0.19029 -0.000101 0.099223 5.2664E-05 530.7583766427479 48.539 0.69583 48.539 48.205 48.9 0 112 66 2 0 0 0 0.82752 2 10043 10043;10138 26.341 0 1 322880 47833 1798 30182 30196 55222;55223 55222 -0.024825189651664914 VHWCCCHCCCP 11 Unmodified _VHWCCCHCCCP_ 0 0 0 REV__L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|40|2|sense REV__L1PA13_dup6785|chr12:3688465-3693486:-|2.3074203783462064|0.0445404568191918|5.7|151.0|40|2|sense MSMS UPN48_class_I_Rep_3 7 647.2020263671875 2 647.199269 1292.38399 NaN NaN NaN NaN NaN NaN NaN 54.139 1 57.708 57.208 58.208 3.5694 0 0 0 0.38417 1 11352 11352 0.35063 0 1 + 47834 29118 30183 30197 55224 55224 -0.2505106339597205 VHWCHLTR 8 Unmodified _VHWCHLTR_ 0 0 0 REV__L1MEd_dup9808|chr7:94523061-94524701:+|1.047722532286527|0.1673024400011546|2.65|151.0|93|2|anti-sense REV__L1MEd_dup9808|chr7:94523061-94524701:+|1.047722532286527|0.1673024400011546|2.65|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_3 7 526.2681274414062 2 526.266353 1050.51815 NaN NaN NaN NaN NaN NaN NaN 24.936 1 28.705 28.205 29.205 3.769 0 0 0 0.40738 1 2963 2963 0.79363 0.10326 1 + 47835 28592 30184 30198 55225 55225 -0.005085109291030676 VHWHFVFF 8 Unmodified _VHWHFVFF_ 0 0 0 REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|167|2|anti-sense REV__L1MA1_dup3883|chr17:5565641-5568994:-|1.8616167932417411|0.0549771110105604|5.08|151.0|167|2|anti-sense MSMS UPN48_class_I_Rep_1 5 559.781494140625 2 559.782162 1117.54977 NaN NaN NaN NaN NaN NaN NaN 67.263 1 70.715 70.215 71.215 3.4516 0 0 0 0.40581 1 15445 15445 2.8892 0.58649 1 + 47836 24796 30185 30199 55226 55226 -0.004301949034925201 VHWITFVKLA 10 Unmodified _VHWITFVKLA_ 0 0 0 REV__L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|198|1|anti-sense REV__L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|198|1|anti-sense MSMS UPN48_class_I_Rep_2 6 405.2395935058594 3 405.241248 1212.70191 NaN NaN NaN NaN NaN NaN NaN 91.163 1 94.918 94.418 95.418 3.7554 0 0 0 0.53105 1 21704 21704 3.5871 0.74377 1 + 47837 29641 30186 30200 55227 55227 0.10407161053421987 VHWITFVKLA 10 Unmodified _VHWITFVKLA_ 0 0 0 REV__L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|198|1|anti-sense REV__L1PA4_dup4670|chr6:70782892-70788469:+|1.1856334173488698|0.1248405267714054|3.25|151.0|198|1|anti-sense MSMS UPN48_class_I_Rep_2 6 405.23992919921875 3 405.241248 1212.70191 NaN NaN NaN NaN NaN NaN NaN 91.289 1 95.044 94.544 95.544 3.7554 0 0 0 0.53105 1 21736 21736 5.4027 1.5264 1 + 47838 29641 30186 30200 55228 55228 0.10407161053421987 VHWVPYFF 8 Unmodified _VHWVPYFF_ 0 0 0 REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|2|1|sense REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 547.7764282226562 2 547.776545 1093.53854 NaN NaN NaN NaN NaN NaN NaN 19.654 1 19.654 19.154 20.154 0 0 0 0 0.40738 1 1908 1908 0.79363 0 1 + 47839 27193 30187 30201 55229 55229 -0.004490169976179459 VHYFPAAV 8 Unmodified _VHYFPAAV_ 0 0 0 REV__ENSG00000083457|ENST00000263087|ITGAE REV__ENSG00000083457|ENST00000263087|ITGAE MSMS UPN48_class_I_Rep_3 7 452.2383728027344 2 452.239796 902.465038 NaN NaN NaN NaN NaN NaN NaN 31.941 1 35.642 35.142 36.142 3.7015 0 0 0 0.40581 1 4790 4790 2.8892 0.31174 1 + 47840 17932 30188 30202 55230 55230 0.009904345598897635 VHYIEYFE 8 Unmodified _VHYIEYFE_ 0 0 0 REV__L1MD2_dup3667|chr6:87346813-87347305:-|1.02146497811696|0.1418874628918756|2.85|151.0|19|1|anti-sense REV__L1MD2_dup3667|chr6:87346813-87347305:-|1.02146497811696|0.1418874628918756|2.85|151.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2583618164062 2 550.258382 1098.50221 NaN NaN NaN NaN NaN NaN NaN 94.202 1 94.202 93.702 94.702 0 0 0 0 0.40738 1 22850 22850 0.79363 0 1 + 47841 27401 30189 30203 55231 55231 -0.04309938685014458 VHYIYQRFRVL 11 Unmodified _VHYIYQRFRVL_ 0 0 0 ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1 ENST00000528308.1_1_11:7507082-7509735:+|nuORF ENST00000528308.1_1_11:7507082-7509735:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 498.28240966796875 3 498.617377 1492.8303 -0.40458 -0.00020173 -0.064856 -3.2338E-05 -0.46943 -0.00023407 498.6174028707538 29.843 0.051453 33.166 33.144 33.195 3.3235 6 4 2 0 0 0 22.551 1 4883 4883 0.094841 0 1 42069 47842 5020 30190 30204 55232 55232 0.10360096296471966 VHYNKIPR 8 Unmodified _VHYNKIPR_ 0 0 0 MLT1A_dup7993|chr17:29790151-29790495:+|1.960790872310876|0.0165116884869069|6.89|151.0|15|1|anti-sense MLT1A_dup7993|chr17:29790151-29790495:+|1.960790872310876|0.0165116884869069|6.89|151.0|15|1|anti-sense MLT1A_dup7993|chr17:29790151-29790495:+|1.960790872310876|0.0165116884869069|6.89|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_3 4 513.7976684570312 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 99.278 1 102.71 102.21 103.21 3.4328 0 0 0 0.40625 1 24556 24556 2.3027 0.24298 1 47843 16241 30191 30205 55233 55233 0.06528288636877733 VIAADVWE 8 Unmodified _VIAADVWE_ 0 0 0 L1ME3Cz_dup396|chr1:92469136-92470443:+|1.514996623705659|0.1185855077113264|3.68|151.0|62|1|anti-sense L1ME3Cz_dup396|chr1:92469136-92470443:+|1.514996623705659|0.1185855077113264|3.68|151.0|62|1|anti-sense L1ME3Cz_dup396|chr1:92469136-92470443:+|1.514996623705659|0.1185855077113264|3.68|151.0|62|1|anti-sense MSMS UPN48_class_I_Rep_1 5 451.73443603515625 2 451.734543 901.454533 NaN NaN NaN NaN NaN NaN NaN 94.982 1 98.598 98.098 99.098 3.6167 0 0 0 0.40625 1 22865 22865 2.3027 0 1 47844 12773 30192 30206 55234 55234 -0.0001359288519324764 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN46_class_I_Rep_3 1 485.3081970214844 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 66.464 1 66.464 65.964 66.964 0 0 0 0 0.17222 1 15081 15081 18.146 1.2041 1 47845 1568 30193 30207 55235 55235 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN46_class_I_Rep_3 1 485.3082580566406 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 66.588 1 66.588 66.088 67.088 0 0 0 0 0.027993 1 15116 15116 47.594 18.513 1 47846 1568 30193 30207 55236 55236 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN47_class_I_Rep_1 2 485.3081970214844 2 485.30821 968.601866 0.16818 8.1618E-05 0.64454 0.0003128 0.81272 0.00039442 485.30809534168344 59.739 1.1347 63.137 62.638 63.773 3.3982 177 81 4 0 0 0 0.013215 5 13819 13819;13857;13897;13942;13981 67.838 27.888 1 1253100 47847 1568 30193 30207 55237;55238;55239;55240;55241 55237 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN47_class_I_Rep_2 3 485.30816650390625 2 485.30821 968.601866 0.28549 0.00013855 0.79453 0.00038559 1.08 0.00052414 485.308029029098 59.93 1.0975 63.203 62.634 63.732 3.2731 178 68 4 0 0 0 0.0058741 5 13994 13910;13951;13994;14037;14078 76.825 26.421 1 1360900 47848 1568 30193 30207 55242;55243;55244;55245;55246 55244 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN47_class_I_Rep_2 3 485.3080749511719 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 60.367 1 63.633 63.133 64.133 3.2654 0 0 0 5.0148E-07 1 14120 14120 72.968 29.11 1 47849 1568 30193 30207 55247 55247 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN47_class_I_Rep_2 3 485.3081359863281 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 61.162 1 64.427 63.927 64.927 3.2654 0 0 0 0.2408 1 14357 14357 13.906 2.2658 1 47850 1568 30193 30207 55248 55248 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN47_class_I_Rep_2 3 485.30853271484375 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 61.307 1 64.572 64.072 65.072 3.2654 0 0 0 0.2408 1 14402 14402 13.906 2.2658 1 47851 1568 30193 30207 55249 55249 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN47_class_I_Rep_3 4 485.3080749511719 2 485.30821 968.601866 0.062893 3.0522E-05 0.56643 0.00027489 0.62932 0.00030541 485.30812663974615 59.923 1.1894 63.088 62.667 63.856 3.1651 185 84 4 0 0 0 0.026395 7 14043 13961;14001;14043;14088;14127;14170;14212 59.368 26.421 1 1104600 47852 1568 30193 30207 55250;55251;55252;55253;55254;55255;55256 55252 0.11630923719633302 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN47_class_I_Rep_3 4 485.3082580566406 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 60.752 1 63.917 63.417 64.417 3.1651 0 0 0 0.013516 1 14286 14286 55.503 26.421 1 47853 1568 30193 30207 55257 55257 0.11630923719633302 VIAGANLGRV 10 Unmodified _VIAGANLGRV_ 0 0 0 ENSG00000280969|ENST00000629237|RPS4Y2 ENSG00000280969|ENST00000629237|RPS4Y2 ENSG00000280969|ENST00000629237|RPS4Y2 MSMS UPN47_class_I_Rep_2 3 485.3082580566406 2 485.295633 968.576714 NaN NaN NaN NaN NaN NaN NaN 60.858 1 64.123 63.623 64.623 3.2654 0 0 0 0.53105 1 14265 14265 6.7232 0.96273 1 47854 5846 30194 30208 55258 55258 0.09116868917055854 VIAGIVLIN 9 Unmodified _VIAGIVLIN_ 0 0 0 REV__ENSG00000176136|ENST00000589410|MC5R REV__ENSG00000176136|ENST00000589410|MC5R MSMS UPN48_class_I_Rep_1 5 456.30133056640625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 43.838 1 47.348 46.848 47.848 3.5103 0 0 0 0.39326 1 8273 8273 2.3027 0 1 + 47855 20578 30195 30209 55259 55259 0.1262842283366581 VIAPWLRN 8 Unmodified _VIAPWLRN_ 0 0 0 REV__MER58A_dup11665|chr17:46490123-46490328:-|1.1185108817227272|0.0365981376388026|4.93|150.0|12|2|anti-sense REV__MER58A_dup11665|chr17:46490123-46490328:-|1.1185108817227272|0.0365981376388026|4.93|150.0|12|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 484.26519775390625 2 484.787444 967.560336 -0.34121 -0.00016541 -0.33743 -0.00016358 -0.67864 -0.000329 484.788060397575 40.222 0.20295 43.459 43.291 43.494 3.2372 16 12 2 0 0 0 0.72333 1 8031 8031 2.3027 0 1 30920 + 47856 31459 30196 30210 55260 55260 0.07525787750932977 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.30010986328125 2 435.300188 868.585822 0.034316 1.4938E-05 0.15557 6.7722E-05 0.18989 8.266E-05 435.30021236550516 62.231 0.2549 65.599 65.521 65.776 3.3681 29 17 2 0 0 0 0.82752 1 14652 14652 0.79363 0 1 222770 47857 3666 30197 30211 55261 55261 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.3002624511719 2 435.300188 868.585822 0.032132 1.3987E-05 0.246 0.00010709 0.27814 0.00012107 435.3002593476602 62.476 0.18855 65.844 65.76 65.949 3.3681 14 8 2 0 0 0 0.82752 1 14730 14730 0.79363 0 1 519630 47858 3666 30197 30211 55262 55262 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.30010986328125 2 435.300188 868.585822 0.029043 1.2642E-05 0.13438 5.8495E-05 0.16342 7.1137E-05 435.3002509489463 62.768 0.34351 66.127 65.94 66.284 3.3595 41 23 2 0 0 0 0.82752 1 14794 14794 0.79363 0 1 450490 47859 3666 30197 30211 55263 55263 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.30023193359375 2 435.300188 868.585822 0.0004014 1.7473E-07 0.37493 0.00016321 0.37533 0.00016338 435.30031915675283 65.513 0.32807 68.869 68.581 68.909 3.3557 20 16 2 0 0 0 0.82752 1 15627 15627 0.79363 0 1 246920 47860 3666 30197 30211 55264 55264 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MSMS UPN47_class_I_Rep_1 2 435.30023193359375 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 63.375 1 66.734 66.234 67.234 3.3595 0 0 0 0.40738 1 14992 14992 0.79363 0 1 47861 3666 30197 30211 55265 55265 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MSMS UPN47_class_I_Rep_1 2 435.3002014160156 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 63.497 1 66.857 66.357 67.357 3.3595 0 0 0 0.40738 1 15028 15028 0.79363 0 1 47862 3666 30197 30211 55266 55266 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.3001708984375 2 435.300188 868.585822 -0.37476 -0.00016313 0.59356 0.00025837 0.2188 9.5242E-05 435.30039461416044 62.699 0.12585 65.954 65.925 66.051 3.2558 13 7 2 0 0 0 0.82752 1 14829 14829 0.79363 0 1 328010 47863 3666 30197 30211 55267 55267 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.3000793457031 2 435.300188 868.585822 -0.38347 -0.00016693 0.47665 0.00020749 0.093184 4.0563E-05 435.30033842876463 63.099 0.15761 66.355 66.258 66.415 3.2558 18 9 3 0 0 0 0.82752 1 14958 14958 0.79363 0 1 279090 47864 3666 30197 30211 55268 55268 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.3002624511719 2 435.300188 868.585822 -0.40362 -0.0001757 0.62105 0.00027034 0.21742 9.4645E-05 435.30050685760824 63.981 0.10511 67.237 67.185 67.29 3.2556 12 7 2 0 0 0 0.82752 1 15226 15226 0.79363 0 1 180130 47865 3666 30197 30211 55269 55269 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 435.3003234863281 2 435.300188 868.585822 -0.43895 -0.00019107 0.54827 0.00023866 0.10932 4.7588E-05 435.3004213695495 65.907 0.59126 69.165 69.049 69.641 3.2588 43 33 2 0 0 0 0.82752 1 15803 15803 0.79363 0 1 199150 47866 3666 30197 30211 55270 55270 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MSMS UPN47_class_I_Rep_2 3 435.30029296875 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 63.755 1 67.011 66.511 67.511 3.2556 0 0 0 0.40738 1 15143 15143 0.79363 0 1 47867 3666 30197 30211 55271 55271 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.3003234863281 2 435.300188 868.585822 -0.42069 -0.00018313 0.63189 0.00027506 0.2112 9.1937E-05 435.3004315069242 63.818 0.11608 66.992 66.951 67.067 3.1741 17 10 2 0 0 0 0.82752 1 15225 15225 0.79363 0 1 147740 47868 3666 30197 30211 55272 55272 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.3003845214844 2 435.300188 868.585822 -0.41784 -0.00018189 0.53854 0.00023443 0.1207 5.2541E-05 435.30043721564414 64.011 0.20855 67.185 67.051 67.259 3.1741 27 16 2 0 0 0 0.82752 1 15282 15282 0.79363 0 1 82661 47869 3666 30197 30211 55273 55273 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 434.88232421875 2 435.300188 868.585822 -0.42354 -0.00018437 0.70945 0.00030882 0.2859 0.00012445 435.30047892373267 63.592 0.23077 66.766 66.721 66.951 3.1741 39 20 2 0 0 0 0.72333 1 15201 15201 0.79363 0 1 508150 47870 3666 30197 30211 55274 55274 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.2998352050781 2 435.300188 868.585822 0.076852 3.3454E-05 0.3088 0.00013442 0.38565 0.00016787 435.30026182527735 63.374 0.20938 66.832 66.656 66.866 3.4578 27 16 3 0 0 0 0.82752 1 14232 14232 0.79363 0 1 443250 47871 3666 30197 30211 55275 55275 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.3003845214844 2 435.300188 868.585822 0.071197 3.0992E-05 0.34454 0.00014998 0.41574 0.00018097 435.3002666906238 63.681 0.27024 67.139 67.022 67.292 3.4578 42 22 2 0 0 0 0.82752 1 14343 14343 0.79363 0 1 590000 47872 3666 30197 30211 55276 55276 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 435.2998352050781 2 435.300188 868.585822 0.03279 1.4273E-05 0.13593 5.9168E-05 0.16871 7.3442E-05 435.3002432079508 66.173 0.22303 69.625 69.431 69.654 3.4516 24 14 2 0 0 0 0.82752 1 15101 15101 0.79363 0 1 235030 47873 3666 30197 30211 55277 55277 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.3001708984375 2 435.300188 868.585822 0.17627 7.673E-05 0.10648 4.635E-05 0.28275 0.00012308 435.30025723223287 65.878 0.45464 69.385 69.034 69.488 3.5077 40 29 2 0 0 0 0.82752 1 14941 14941 0.79363 0 1 228360 47874 3666 30197 30211 55278 55278 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 435.300188 868.585822 0.018173 7.9108E-06 0.25014 0.00010889 0.26832 0.0001168 435.300100538332 63.8 0.071808 67.156 67.113 67.185 3.3557 0.05966 -9.7316E-05 NaN 0.79363 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 116760 47875 3666 30197 30211 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.300188 868.585822 -0.41133 -0.00017905 0.43859 0.00019092 0.027256 1.1864E-05 435.3004637571085 66.255 0.21291 69.44 69.351 69.564 3.1853 -0.055273 0.00030244 NaN 0.79363 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 64676 47876 3666 30197 30211 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 435.300188 868.585822 -0.43901 -0.0001911 0.63985 0.00027853 0.20084 8.7427E-05 435.30045706374216 62.748 0.32253 65.918 65.771 66.093 3.1698 -0.026834 0.00015803 NaN 0.79363 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 481210 47877 3666 30197 30211 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.15837 6.894E-05 -0.14533 -6.3263E-05 0.01304 5.6764E-06 435.30004152048417 63.624 0.13963 67.133 67.087 67.226 3.5091 0.08258 -0.00037334 NaN 0.79363 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 199280 47878 3666 30197 30211 0.14627262273370434 VIAVLKAR 8 Unmodified _VIAVLKAR_ 0 0 0 ENST00000532145.1_1_15:101605000-101609050:+|nuORF;ENST00000525284.5_1_15:101602697-101609050:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1 ENST00000532145.1_1_15:101605000-101609050:+|nuORF ENST00000532145.1_1_15:101605000-101609050:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.14955 6.5099E-05 0.21987 9.571E-05 0.36942 0.00016081 435.3003574345852 62.551 0.12783 66.062 66.016 66.144 3.5104 0.11705 -0.0002076 NaN 0.79363 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 129380 47879 3666 30197 30211 0.14627262273370434 VIAVWPQR 8 Unmodified _VIAVWPQR_ 0 0 0 REV__ENST00000538923.1_1_11:94226040-94226943:-|nuORF REV__ENST00000538923.1_1_11:94226040-94226943:-|nuORF MSMS UPN48_class_I_Rep_1 5 484.78790283203125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 59.305 1 62.785 62.285 63.285 3.4801 0 0 0 0.40604 1 13019 13019 2.5775 0 1 + 47880 21753 30198 30212 55279 55279 0.07525787750944346 VIAYIMETF 9 Unmodified _VIAYIMETF_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MSMS UPN48_class_I_Rep_3 7 543.7830200195312 2 543.780636 1085.54672 NaN NaN NaN NaN NaN NaN NaN 45.735 1 49.372 48.872 49.872 3.6369 0 0 0 0.28335 1 8791 8791 11.64 0 1 47881 5424 30199 30213 55280 55280 0.007367491368086121 VICSDCYD 8 Unmodified _VICSDCYD_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MSMS UPN47_class_I_Rep_1 2 459.1720275878906 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 38.447 1 42.112 41.612 42.612 3.6652 0 0 0 0.40738 1 7410 7410 0.79363 0 1 47882 5463 30200 30214 55281 55281 -0.1308575503934435 VICVECICI 9 Unmodified _VICVECICI_ 0 0 0 L1ME1_dup17820|chrX:54574071-54575447:-|1.0418250385423171|0.1618801434671879|2.69|151.0|54|1|anti-sense L1ME1_dup17820|chrX:54574071-54575447:-|1.0418250385423171|0.1618801434671879|2.69|151.0|54|1|anti-sense L1ME1_dup17820|chrX:54574071-54575447:-|1.0418250385423171|0.1618801434671879|2.69|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_2 3 497.763671875 2 497.742142 993.469731 NaN NaN NaN NaN NaN NaN NaN 34.744 1 38.169 37.669 38.669 3.4253 0 0 0 0.4029 1 6323 6323 0 0 1 47883 12262 30201 30215 55282 55282 -0.027265086755392076 VICWMLLIF 9 Unmodified _VICWMLLIF_ 0 0 0 REV__L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|91|1|anti-sense REV__L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|91|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 569.275146484375 2 569.313592 1136.61263 0.39693 0.00022598 -0.6305 -0.00035895 -0.23357 -0.00013298 569.3131720484605 64.336 0.25412 67.591 67.503 67.757 3.2556 31 19 2 0 0 0 0.12422 1 15297 15297 2.3027 0.4585 1 111190 + 47884 25610 30202 30216 55283 55283 0.0497886677801489 VIDDKRKHI 9 Unmodified _VIDDKRKHI_ 0 0 0 LTR38C_dup37|chr6:27758850-27759477:+|1.3043416530088552|0.2572561261896753|2.34|145.0|30|2|anti-sense LTR38C_dup37|chr6:27758850-27759477:+|1.3043416530088552|0.2572561261896753|2.34|145.0|30|2|anti-sense LTR38C_dup37|chr6:27758850-27759477:+|1.3043416530088552|0.2572561261896753|2.34|145.0|30|2|anti-sense MSMS UPN47_class_I_Rep_1 2 562.3349609375 2 562.332747 1122.65094 NaN NaN NaN NaN NaN NaN NaN 109.25 1 112.86 112.36 113.36 3.6046 0 0 0 0.38639 1 26933 26933 3.9444 1.6417 1 47885 15632 30203 30217 55284 55284 0.09452212008568495 VIDDKRKHI 9 Unmodified _VIDDKRKHI_ 0 0 0 LTR38C_dup37|chr6:27758850-27759477:+|1.3043416530088552|0.2572561261896753|2.34|145.0|30|2|anti-sense LTR38C_dup37|chr6:27758850-27759477:+|1.3043416530088552|0.2572561261896753|2.34|145.0|30|2|anti-sense LTR38C_dup37|chr6:27758850-27759477:+|1.3043416530088552|0.2572561261896753|2.34|145.0|30|2|anti-sense MSMS UPN48_class_I_Rep_1 5 562.33447265625 2 562.332747 1122.65094 NaN NaN NaN NaN NaN NaN NaN 109.24 1 112.87 112.37 113.37 3.6321 0 0 0 0.37692 1 26521 26521 6.2058 2.9245 1 47886 15632 30203 30217 55285 55285 0.09452212008568495 VIDEKIVR 8 Unmodified _VIDEKIVR_ 0 0 0 REV__ENSG00000136542|ENST00000259056|GALNT5 REV__ENSG00000136542|ENST00000259056|GALNT5 MSMS UPN47_class_I_Rep_2 3 486.2975158691406 2 486.297842 970.581131 NaN NaN NaN NaN NaN NaN NaN 55.971 1 59.282 58.782 59.782 3.3102 0 0 0 0.40157 1 12776 12776 7.2892 2.0586 1 + 47887 19190 30204 30218 55286 55286 0.09466333339958055 VIDEPVRL 8 Unmodified _VIDEPVRL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|142|15.46|0.71|4.45|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS UPN47_class_I_Rep_2 3 470.7764892578125 2 470.776742 939.538931 -0.070613 -3.3243E-05 -0.030937 -1.4564E-05 -0.10155 -4.7808E-05 470.7766014853813 47.115 0.71766 50.466 50.132 50.849 3.3515 89 47 3 0 0 0 0.82752 1 10091 10091 25.399 9.5521 1 203430 47888 572 30205 30219 55287 55287 0.0667435793156983 VIDEPVRL 8 Unmodified _VIDEPVRL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|142|15.46|0.71|4.45|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS UPN47_class_I_Rep_3 4 470.7767639160156 2 470.776742 939.538931 -0.12276 -5.7791E-05 0.10244 4.8228E-05 -0.020313 -9.5631E-06 470.7767452321997 47.245 0.66004 50.489 50.151 50.811 3.2439 79 41 3 0 0 0 0.82752 2 10143 10143;10180 20.454 4.6064 1 189910 47889 572 30205 30219 55288;55289 55288 0.0667435793156983 VIDEPVRL 8 Unmodified _VIDEPVRL_ 0 0 0 nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|142|15.46|0.71|4.45|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67 nc|ENSG00000148773|P46013-2|MKI67 nc|ENSG00000148773|P46013-2|MKI67 MULTI-MATCH UPN47_class_I_Rep_1 2 2 470.776742 939.538931 -0.13115 -6.1741E-05 -0.15424 -7.2613E-05 -0.28539 -0.00013435 470.77665424568164 46.748 0.69006 50.443 50.117 50.807 3.6951 -0.022785 -0.00013047 NaN 25.399 91 43 3 NaN NaN NaN NaN 0 NaN NaN 0 200230 47890 572 30205 30219 0.0667435793156983 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_1 2 576.798095703125 2 576.798403 1151.58225 -0.052257 -3.0142E-05 -0.14043 -8.1E-05 -0.19269 -0.00011114 576.7982794784376 36.934 0.76801 40.603 40.277 41.045 3.6692 137 62 3 0 0 0 0.12086 2 6922 6922;6989 77.049 50.78 1 320720 47891 2425;4314 30206 30220 55290;55291 55290 0.012525029182143044 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 576.7981567382812 2 576.798403 1151.58225 0.045463 2.6223E-05 -0.0044047 -2.5406E-06 0.041058 2.3682E-05 576.7983059188987 37.123 0.78277 40.522 40.288 41.071 3.3988 132 58 3 0 0 0 0.1396 2 7023 7023;7103 68.76 42.492 1 253720 47892 2425;4314 30206 30220 55292;55293 55292 0.012525029182143044 VIDEVRTGTY 10 Unmodified _VIDEVRTGTY_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-SECPEP UPN47_class_I_Rep_3 4 577.1260986328125 2 576.798403 1151.58225 -0.074258 -4.2832E-05 -0.12722 -7.338E-05 -0.20148 -0.00011621 576.798304547353 37.232 0.82247 40.479 40.2 41.023 3.247 137 62 3 0 0 0 0.26909 1 7186 7186 62.869 36.6 1 260080 47893 2425;4314 30206 30220 55294 55294 0.012525029182143044 VIDGHIYAV 9 Unmodified _VIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.76910400390625 2 493.768917 985.523281 -0.10286 -5.0791E-05 0.28936 0.00014288 0.18649 9.2085E-05 493.7689312985281 45.959 0.6706 49.659 49.361 50.032 3.6999 65 40 2 0 0 0 0.17468 3 9689 9689;9733;9779 23.148 3.8914 1 115700 47894 1196 30207 30221 55295;55296;55297 55295 0.0299407141451411 VIDGHIYAV 9 Unmodified _VIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS UPN47_class_I_Rep_2 3 493.76861572265625 2 493.768917 985.523281 0.097307 4.8047E-05 -0.083225 -4.1094E-05 0.014082 6.9531E-06 493.7687607016129 46.309 0.62421 49.661 49.407 50.031 3.3515 71 41 2 0 0 0 0.25207 2 9850 9850;9896 16.942 5.302 1 128000 47895 1196 30207 30221 55298;55299 55298 0.0299407141451411 VIDGHIYAV 9 Unmodified _VIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS UPN47_class_I_Rep_3 4 493.7691955566406 2 493.768917 985.523281 0.064287 3.1743E-05 -0.024629 -1.2161E-05 0.039658 1.9582E-05 493.7688783424402 46.409 0.67808 49.653 49.359 50.037 3.2439 75 43 2 0 0 0 0.17468 1 9964 9964 23.148 3.8914 1 121160 47896 1196 30207 30221 55300 55300 0.0299407141451411 VIDHHFKFL 9 Unmodified _VIDHHFKFL_ 0 0 0 REV__Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|55|2|anti-sense REV__Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|55|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 578.3192138671875 2 578.319109 1154.62366 0.43188 0.00024977 -1.141 -0.00065985 -0.70909 -0.00041008 578.318232898294 64.046 0.33624 67.22 67.075 67.411 3.1741 32 22 2 0 0 0 0.47197 1 15271 15271 3.5965 0.31518 1 155230 + 47897 32485 30208 30222 55301 55301 0.05253728468187546 VIDHHFKFL 9 Unmodified _VIDHHFKFL_ 0 0 0 REV__Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|55|2|anti-sense REV__Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|55|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 578.319109 1154.62366 0.36324 0.00021007 -1.3531 -0.0007825 -0.98982 -0.00057243 578.3183100012473 63.72 0.40665 67.076 66.832 67.239 3.3557 -0.072312 -0.00013469 NaN 3.5965 50 34 2 NaN NaN NaN NaN 0 NaN NaN 0 58972 + 47898 32485 30208 30222 0.05253728468187546 VIDPGQAL 8 Unmodified _VIDPGQAL_ 0 0 0 REV__ENST00000571594.1_1_17:80687806-80688040:+|nuORF REV__ENST00000571594.1_1_17:80687806-80688040:+|nuORF MSMS UPN47_class_I_Rep_2 3 406.7276611328125 2 406.729261 811.443968 NaN NaN NaN NaN NaN NaN NaN 97.943 1 101.43 100.93 101.93 3.4836 0 0 0 0.40604 1 24024 24024 2.5775 0 1 + 47899 23091 30209 30223 55302 55302 0.030704244603612096 VIDQKVYEI 9 Unmodified _VIDQKVYEI_ 0 0 0 nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN47_class_I_Rep_2 3 553.8079223632812 2 553.808239 1105.60193 0.28304 0.00015675 -0.54723 -0.00030306 -0.26419 -0.00014631 553.8080283723037 46.777 0.51686 50.128 49.858 50.374 3.3515 49 38 2 0 0 0 0.26468 1 9978 9978 16.149 2.6412 1 92982 47900 1476 30210 30224 55303 55303 0.05334878928965736 VIDQKVYEI 9 Unmodified _VIDQKVYEI_ 0 0 0 nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF nc|ENSG00000100129|Q9Y262-2|EIF3L nc|ENSG00000100129|Q9Y262-2|EIF3L MULTI-MSMS UPN47_class_I_Rep_3 4 553.8068237304688 2 553.808239 1105.60193 0.31603 0.00017502 -0.65597 -0.00036328 -0.33994 -0.00018826 553.8077454638036 46.922 0.54413 50.166 49.833 50.377 3.2439 48 33 2 0 0 0 0.2924 3 10044 10044;10085;10122 14.405 6.7964 1 76162 47901 1476 30210 30224 55304;55305;55306 55304 0.05334878928965736 VIDQQNGLY 9 Unmodified _VIDQQNGLY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS UPN47_class_I_Rep_1 2 525.2660522460938 2 525.266739 1048.51892 0.017767 9.3323E-06 -0.25997 -0.00013655 -0.2422 -0.00012722 525.2663940034527 44.508 0.64949 48.203 47.885 48.535 3.6951 102 46 3 0 0 0 0.088679 2 9269 9227;9269 36.506 8.8774 1 205130 47902 2751 30211 30225 55307;55308 55308 -0.0033943779901619564 VIDQQNGLY 9 Unmodified _VIDQQNGLY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS UPN47_class_I_Rep_2 3 525.2665405273438 2 525.266739 1048.51892 -0.15756 -8.2763E-05 0.028436 1.4936E-05 -0.12913 -6.7826E-05 525.2666484769331 44.776 0.68591 48.131 47.794 48.48 3.3556 94 43 3 0 0 0 0.10568 2 9389 9312;9389 32.786 5.1569 1 220330 47903 2751 30211 30225 55309;55310 55310 -0.0033943779901619564 VIDQQNGLY 9 Unmodified _VIDQQNGLY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS UPN47_class_I_Rep_3 4 525.2669677734375 2 525.266739 1048.51892 0.11656 6.1226E-05 -0.075403 -3.9606E-05 0.041158 2.1619E-05 525.2665375145666 44.804 0.68585 48.048 47.763 48.449 3.2441 90 43 3 0 0 0 0.081756 1 9427 9427 38.176 14.155 1 226810 47904 2751 30211 30225 55311 55311 -0.0033943779901619564 VIDSAELQAY 10 Unmodified _VIDSAELQAY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_1 2 554.77978515625 2 554.779679 1107.5448 0.3589 0.00019911 0.049595 2.7515E-05 0.4085 0.00022663 554.7794909552485 54.801 0.90363 58.302 57.945 58.848 3.5014 136 54 3 0 0 0 0.12806 8 12395 12318;12356;12395;12436;12477;12485;12505;12531 80.676 33.082 1 415810 47905 5749 30212 30226 55312;55313;55314;55315;55316;55317;55318;55319 55314 -0.00466588347421748 VIDSAELQAY 10 Unmodified _VIDSAELQAY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_2 3 554.7797241210938 2 554.779679 1107.5448 0.5169 0.00028676 -0.24136 -0.0001339 0.27553 0.00015286 554.7794373378512 54.971 0.70483 58.281 57.982 58.687 3.3102 103 40 3 0 0 0 0.0082282 5 12456 12416;12456;12495;12536;12589 100.71 41.34 1 389280 47906 5749 30212 30226 55320;55321;55322;55323;55324 55321 -0.00466588347421748 VIDSAELQAY 10 Unmodified _VIDSAELQAY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_3 4 554.7797241210938 2 554.779679 1107.5448 0.43144 0.00023936 -0.2163 -0.00012 0.21514 0.00011936 554.779506737571 55.134 0.74272 58.312 57.922 58.665 3.1779 106 43 4 0 0 0 0.055256 5 12551 12510;12551;12592;12634;12677 93.938 49.956 1 361050 47907 5749 30212 30226 55325;55326;55327;55328;55329 55326 -0.00466588347421748 VIDSAELQAY 10 Unmodified _VIDSAELQAY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_3 4 555.284423828125 2 554.779679 1107.5448 0.4195 0.00023273 2.6102 0.0014481 3.0297 0.0016808 555.2837601657096 55.523 0.09864 58.701 58.665 58.764 3.1779 9 6 2 0 0 0 0.41414 1 12700 12700 18.373 7.2586 1 60468 47908 5749 30212 30226 55330 55330 -0.00466588347421748 VIDTGIALFV 10 Unmodified _VIDTGIALFV_ 0 0 0 ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 524.3069458007812 2 524.307875 1046.6012 0.28712 0.00015054 -0.16045 -8.4126E-05 0.12667 6.6413E-05 524.3077469434346 71.246 0.59882 71.246 70.944 71.543 0 92 64 2 0 0 0 0.46161 3 16350 16350;16423;16478 14.838 0 1 292370 47909 7317 30213 30227 55331;55332;55333 55331 0.07976084279880524 VIDTGIALFV 10 Unmodified _VIDTGIALFV_ 0 0 0 ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 524.3075561523438 2 524.307875 1046.6012 0.28736 0.00015066 -0.33166 -0.00017389 -0.044303 -2.3228E-05 524.3075707528828 65.354 0.96673 68.71 68.326 69.293 3.3557 132 59 3 0 0 0 0.46161 3 15686 15486;15496;15686 14.838 0 1 466260 47910 7317 30213 30227 55334;55335;55336 55336 0.07976084279880524 VIDTGIALFV 10 Unmodified _VIDTGIALFV_ 0 0 0 ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 524.3076782226562 2 524.307875 1046.6012 -0.0095673 -5.0162E-06 0.095851 5.0256E-05 0.086284 4.5239E-05 524.3078061417647 65.567 0.8652 68.822 68.467 69.333 3.2556 110 56 3 0 0 0 0.30832 3 15702 15622;15636;15702 30.637 3.1079 1 605660 47911 7317 30213 30227 55337;55338;55339 55339 0.07976084279880524 VIDTGIALFV 10 Unmodified _VIDTGIALFV_ 0 0 0 ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF ENST00000534281.1_1_11:10536572-10536629:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 524.3079223632812 2 524.307875 1046.6012 0.33352 0.00017487 -0.36418 -0.00019094 -0.030665 -1.6078E-05 524.3075918552754 65.637 1.0239 68.816 68.447 69.471 3.1795 139 67 3 0 0 0 0.46161 2 15865 15865;15889 14.838 0 1 541020 47912 7317 30213 30227 55340;55341 55340 0.07976084279880524 VIEEERPQD 9 Unmodified _VIEEERPQD_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS UPN47_class_I_Rep_1 2 557.7725830078125 2 557.772385 1113.53022 0.41575 0.00023189 0.067474 3.7635E-05 0.48322 0.00026953 557.772275788471 61.277 0.71947 64.659 64.377 65.096 3.3815 106 52 3 0 0 0 0.26468 1 14393 14393 16.149 0 1 337470 47913 4754 30214 30228 55342 55342 -0.022006604955549847 VIETDAVLR 9 Unmodified _VIETDAVLR_ 0 0 0 REV__Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|4|1|sense REV__Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 508.2923889160156 2 508.292756 1014.57096 0.2256 0.00011467 -0.30114 -0.00015307 -0.075546 -3.8399E-05 508.2926003130181 55.053 0.62448 58.363 58.107 58.731 3.3102 51 35 2 0 0 0 0.42249 1 12573 12573 6.7232 0 1 90082 + 47914 32459 30215 30229 55343 55343 0.06425725614701605 VIFCRMRK 8 Unmodified _VIFCRMRK_ 0 0 0 L1PA15-16_dup1265|chr19:44293192-44295867:+|1.6049620194654548|0.2079336867615537|2.95|150.0|62|2|sense L1PA15-16_dup1265|chr19:44293192-44295867:+|1.6049620194654548|0.2079336867615537|2.95|150.0|62|2|sense L1PA15-16_dup1265|chr19:44293192-44295867:+|1.6049620194654548|0.2079336867615537|2.95|150.0|62|2|sense MSMS UPN47_class_I_Rep_1 2 526.7972412109375 2 526.796432 1051.57831 NaN NaN NaN NaN NaN NaN NaN 20.351 1 23.963 23.463 24.463 3.6118 0 0 0 0.40738 1 2027 2027 0.79363 0 1 47915 14001 30216 30230 55344 55344 0.05458463409786418 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENSG00000181381|ENST00000682922|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L MULTI-MSMS UPN47_class_I_Rep_1 2 567.7952880859375 2 567.795132 1133.57571 0.33228 0.00018867 -0.10155 -5.7662E-05 0.23073 0.00013101 567.7952568400729 66.8 0.77746 70.161 69.748 70.526 3.3611 142 56 3 0 0 0 0.0081951 5 16026 15936;16026;16034;16062;16098 71.134 0 1 471340 47916 4916 30217 30231 55345;55346;55347;55348;55349 55346 0.014266097574591186 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENSG00000181381|ENST00000682922|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L MULTI-MSMS UPN47_class_I_Rep_2 3 567.7957153320312 2 567.795132 1133.57571 0.37994 0.00021573 -0.20193 -0.00011465 0.17801 0.00010107 567.7950603663328 66.978 0.86872 70.241 69.923 70.792 3.2636 156 64 3 0 0 0 0.0081951 6 16128 16047;16103;16128;16165;16207;16276 71.134 0 1 298810 47917 4916 30217 30231 55350;55351;55352;55353;55354;55355 55352 0.014266097574591186 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENSG00000181381|ENST00000682922|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L MSMS UPN47_class_I_Rep_2 3 567.7950439453125 2 567.795132 1133.57571 NaN NaN NaN NaN NaN NaN NaN 67.596 1 70.86 70.36 71.36 3.2636 0 0 0 0.2088 1 16312 16312 15.847 0 1 47918 4916 30217 30231 55356 55356 0.014266097574591186 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENSG00000181381|ENST00000682922|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L nc|ENSG00000181381|Q5H9U9-2|DDX60L MULTI-MSMS UPN47_class_I_Rep_3 4 567.7952880859375 2 567.795132 1133.57571 0.43838 0.00024891 -0.22132 -0.00012566 0.21706 0.00012325 567.795096718566 67.028 0.79185 70.219 69.859 70.651 3.1914 143 60 3 0 0 0 0.0081951 4 16189 16189;16234;16272;16319 71.134 0 1 347390 47919 4916 30217 30231 55357;55358;55359;55360 55357 0.014266097574591186 VIFDWEAIL 9 Unmodified _VIFDWEAIL_ 0 0 0 REV__L1ME1_dup22546|chr12:62300380-62301706:+|1.221136157292106|0.0161758084956832|6.24|151.0|53|1|anti-sense REV__L1ME1_dup22546|chr12:62300380-62301706:+|1.221136157292106|0.0161758084956832|6.24|151.0|53|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 553.2996826171875 2 553.30005 1104.58555 0.4935 0.00027305 0.0059096 3.2698E-06 0.49941 0.00027632 553.2999402790554 88.598 0.7486 92.336 91.979 92.728 3.7379 201 98 3 0 0 0 0.15878 5 21020 21020;21046;21075;21101;21132 24.674 0 1 540500 + 47920 27682 30218 30232 55361;55362;55363;55364;55365 55361 0.037437977628542285 VIFEGREVQP 10 Unmodified _VIFEGREVQP_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense;MER50-int_dup156|chr6:11108230-11111700:-|1.5883141505235747|0.0370443883540618|5.42|151.0|69|3|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 587.7943115234375 2 587.316763 1172.61897 0.41446 0.00024342 0.024766 1.4545E-05 0.43923 0.00025797 587.316867275836 42.584 0.36601 46.342 46.126 46.492 3.7579 39 34 2 0 0 0 0.84575 1 7901 7901 12.241 12.241 1 81038 47921 16054 30219 30233 55366 55366 0.0395679953473973 VIFEGREVQP 10 Unmodified _VIFEGREVQP_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense;MER50-int_dup156|chr6:11108230-11111700:-|1.5883141505235747|0.0370443883540618|5.42|151.0|69|3|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|39|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 587.316763 1172.61897 0.42201 0.00024785 -0.12751 -7.4891E-05 0.2945 0.00017296 587.3167546391567 42.871 0.42194 46.382 46.187 46.609 3.5103 0.019834 -0.00012897 NaN 12.241 38 30 2 NaN NaN NaN NaN 0 NaN NaN 0 97840 47922 16054 30219 30233 0.0395679953473973 VIFFFILES 9 Unmodified _VIFFFILES_ 0 0 0 REV__AluJr_dup14340|chr3:50096595-50096889:-|1.191081241166618|0.2895505071867309|2.04|151.0|15|1|anti-sense REV__AluJr_dup14340|chr3:50096595-50096889:-|1.191081241166618|0.2895505071867309|2.04|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.8146362304688 2 557.812793 1113.61103 NaN NaN NaN NaN NaN NaN NaN 111.9 1 115.47 114.97 115.97 3.572 0 0 0 0.39428 1 27605 27605 2.0598 0 1 + 47923 17029 30220 30234 55367 55367 0.0587727228530639 VIFFTTGLIKL 11 Unmodified _VIFFTTGLIKL_ 0 0 0 REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|6|1|sense REV__L1MC4_dup15346|chr10:45876957-45877629:+|1.6761914454752975|0.0112393149911045|7.22|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.8889770507812 2 626.389199 1250.76385 0.49473 0.0003099 -1.3952 -0.00087393 -0.90046 -0.00056404 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.57992 1 24505 24505 5.7319 0 1 107270000 + 47924 26821 30221 30235 55368 55368 0.14849467681892747 VIFHCMHI 8 Unmodified _VIFHCMHI_ 0 0 0 L1MB3_dup6982|chr7:128545440-128545845:-|1.310867668897348|0.0064145404898643|7.67|151.0|27|3|anti-sense L1MB3_dup6982|chr7:128545440-128545845:-|1.310867668897348|0.0064145404898643|7.67|151.0|27|3|anti-sense L1MB3_dup6982|chr7:128545440-128545845:-|1.310867668897348|0.0064145404898643|7.67|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 500.2491760253906 2 500.248783 998.483013 NaN NaN NaN NaN NaN NaN NaN 76.498 1 80.008 79.508 80.508 3.5102 0 0 0 0.40738 1 18169 18169 0.79363 0 1 47925 10449 30222 30236 55369 55369 -0.01628889781250109 VIFHGFIII 9 Unmodified _VIFHGFIII_ 0 0 0 Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|24|2|sense Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|24|2|sense Tigger1_dup9863|chr14:23997021-23999350:-|1.4393838681367843|0.3738720523590069|1.94|151.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 529.8065185546875 2 529.823495 1057.63244 NaN NaN NaN NaN NaN NaN NaN 20.28 1 23.892 23.392 24.392 3.6118 0 0 0 0.40038 1 2006 2006 0.6015 0 1 47926 33217 30223 30237 55370 55370 0.10592702104668206 VIFHIDGSI 9 Unmodified _VIFHIDGSI_ 0 0 0 REV__L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|273|2|anti-sense REV__L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|273|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7769470214844 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 54.958 1 58.46 57.96 58.96 3.5014 0 0 0 0.28335 1 12437 12437 11.64 0 1 + 47927 30097 30224 30238 55371 55371 0.03914357931569157 VIFHVHGW 8 Unmodified _VIFHVHGW_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|47|2|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|47|2|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|47|2|sense MSMS UPN46_class_I_Rep_3 1 497.7641906738281 2 497.766512 993.518471 NaN NaN NaN NaN NaN NaN NaN 119.61 1 119.61 119.11 120.11 0 0 0 0 0.40738 1 29735 29735 0.79363 0 1 47928 11313 30225 30239 55372 55372 0.021452320624121057 VIFHVHGW 8 Unmodified _VIFHVHGW_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|47|2|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|47|2|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|47|2|sense MSMS UPN48_class_I_Rep_3 7 497.764892578125 2 497.766512 993.518471 NaN NaN NaN NaN NaN NaN NaN 113.56 1 117.22 116.72 117.72 3.6568 0 0 0 0.40738 1 27007 27007 0.79363 0.10326 1 47929 11313 30225 30239 55373 55373 0.021452320624121057 VIFIETRS 8 Unmodified _VIFIETRS_ 0 0 0 AluJo_dup53238|chr13:21444774-21445060:+|1.2169851295480671|0.0168957597584371|6.17|151.0|12|1|anti-sense AluJo_dup53238|chr13:21444774-21445060:+|1.2169851295480671|0.0168957597584371|6.17|151.0|12|1|anti-sense AluJo_dup53238|chr13:21444774-21445060:+|1.2169851295480671|0.0168957597584371|6.17|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.7755126953125 2 482.776742 963.538931 NaN NaN NaN NaN NaN NaN NaN 119.14 1 122.76 122.26 123.26 3.6189 0 0 0 0.40738 1 29073 29073 0.79363 0 1 47930 116 30226 30240 55374 55374 0.05570357931549097 VIFKFFRLFH 10 Unmodified _VIFKFFRLFH_ 0 0 0 L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 451.9325866699219 3 451.932526 1352.77575 0.19043 8.606E-05 0.005678 2.5661E-06 0.1961 8.8626E-05 451.9324893137823 92.778 0.075783 92.778 92.745 92.821 0 13 8 3 0 0 0 0.84575 1 22468 22468 0.77653 0.27058 1 111190 47931 11521 30227 30241 55375 55375 0.11347129215732821 VIFKFFRLFH 10 Unmodified _VIFKFFRLFH_ 0 0 0 L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 451.932526 1352.77575 0.0041505 1.8757E-06 0.31234 0.00014116 0.31649 0.00014303 452.26689531809427 89.284 0.096138 92.737 92.677 92.773 3.4525 0.045514 0.00032566 NaN 0.77653 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 42624 47932 11521 30227 30241 0.11347129215732821 VIFKFFRLFH 10 Unmodified _VIFKFFRLFH_ 0 0 0 L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 451.932526 1352.77575 0.018847 8.5177E-06 -0.092145 -4.1643E-05 -0.073297 -3.3125E-05 451.9323838626056 89.057 0.10496 92.68 92.647 92.752 3.6229 -0.011331 -0.00022274 NaN 0.77653 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 63989 47933 11521 30227 30241 0.11347129215732821 VIFKFFRLFH 10 Unmodified _VIFKFFRLFH_ 0 0 0 L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|61|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 451.932526 1352.77575 0.15509 7.0089E-05 0.14436 6.5239E-05 0.29944 0.00013533 451.93251777621333 88.832 0.056152 92.57 92.533 92.589 3.7379 -0.12108 9.7906E-05 NaN 0.77653 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 46989 47934 11521 30227 30241 0.11347129215732821 VIFLVFLN 8 Unmodified _VIFLVFLN_ 0 0 0 nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-2|CACNA1C MSMS UPN46_class_I_Rep_3 1 482.7956848144531 2 482.796946 963.57934 NaN NaN NaN NaN NaN NaN NaN 40.959 1 40.959 40.459 41.459 0 0 0 0 0.40581 1 7987 7987 2.8892 0 1 47935 3574 30228 30242 55376 55376 0.09609324321979784 VIFMRTCI 8 Unmodified _VIFMRTCI_ 0 0 0 REV__L1PA6_dup2859|chr7:91982208-91983047:-|1.2755473104973067|0.0159261771554867|6.32|151.0|3|1|sense REV__L1PA6_dup2859|chr7:91982208-91983047:-|1.2755473104973067|0.0159261771554867|6.32|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 491.76409912109375 2 491.764266 981.513979 NaN NaN NaN NaN NaN NaN NaN 23.304 1 27.008 26.508 27.508 3.7042 0 0 0 0.40625 1 2859 2859 2.3027 0 1 + 47936 29863 30229 30243 55377 55377 0.0224826353297658 VIFMRTCI 8 Unmodified _VIFMRTCI_ 0 0 0 REV__L1PA6_dup2859|chr7:91982208-91983047:-|1.2755473104973067|0.0159261771554867|6.32|151.0|3|1|sense REV__L1PA6_dup2859|chr7:91982208-91983047:-|1.2755473104973067|0.0159261771554867|6.32|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 491.7630310058594 2 491.764266 981.513979 NaN NaN NaN NaN NaN NaN NaN 23.602 1 27.068 26.568 27.568 3.4655 0 0 0 0.40659 1 2994 2994 1.8442 0 1 + 47937 29863 30229 30243 55378 55378 0.0224826353297658 VIFNRSSFVPF 11 Unmodified _VIFNRSSFVPF_ 0 0 0 REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|54|2|anti-sense REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|54|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 438.2395324707031 3 438.239796 1311.69756 -0.37624 -0.00016488 0.25024 0.00010967 -0.126 -5.5217E-05 438.23982553956694 66.009 1.1248 69.194 68.728 69.853 3.1853 179 75 4 0 0 0 0.51094 1 15884 15884 7.4771 1.2852 1 398640 + 47938 27568 30230 30244 55379 55379 0.05417651839843529 VIFNRSSFVPF 11 Unmodified _VIFNRSSFVPF_ 0 0 0 REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|54|2|anti-sense REV__L1ME1_dup10987|chr5:179982884-179983922:-|11.601163815194138|0.4295182902090413|4.76|151.0|54|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.2398986816406 3 438.239796 1311.69756 0.047867 2.0977E-05 -0.12213 -5.3524E-05 -0.074267 -3.2547E-05 438.2397176418129 66.069 0.89479 69.521 69.115 70.01 3.4516 144 58 3 0 0 0 0.59293 1 15113 15113 5.4027 0.35519 1 639990 + 47939 27568 30230 30244 55380 55380 0.05417651839843529 VIFNVQYTL 9 Unmodified _VIFNVQYTL_ 0 0 0 REV__MER57B2_dup912|chr15:80081389-80081816:-|1.416531394965867|0.0366754736964461|5.27|151.0|30|3|anti-sense REV__MER57B2_dup912|chr15:80081389-80081816:-|1.416531394965867|0.0366754736964461|5.27|151.0|30|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 548.806396484375 2 548.8055 1095.59645 0.47557 0.000261 -0.053059 -2.9119E-05 0.42251 0.00023188 548.8052918071397 77.573 0.46508 81.175 81.003 81.468 3.6016 67 43 3 0 0 0 0.43153 1 18301 18301 6.2058 0 1 137970 + 47940 31453 30231 30245 55381 55381 0.052472001371370425 VIFRDDYC 8 Unmodified _VIFRDDYC_ 0 0 0 REV__ENSG00000163874|ENST00000373087|ZC3H12A REV__ENSG00000163874|ENST00000373087|ZC3H12A MSMS UPN48_class_I_Rep_3 7 515.6952514648438 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 77.157 1 80.758 80.258 81.258 3.6016 0 0 0 0.40604 1 18209 18209 2.5775 1.7838 1 + 47941 18187 30232 30246 55382 55382 -0.05458451733943548 VIFSNNQLF 9 Unmodified _VIFSNNQLF_ 0 0 0 L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|84|1|anti-sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|84|1|anti-sense L1MEf_dup9823|chr15:65687007-65688958:-|4.872810584194928|0.4769202373832549|3.35|151.0|84|1|anti-sense MSMS UPN46_class_I_Rep_3 1 541.2882690429688 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 53.076 1 53.076 52.576 53.576 0 0 0 0 0.22485 1 11394 11394 14.838 0 1 47942 13346 30233 30247 55383 55383 0.023337429602634074 VIFVHVHI 8 Unmodified _VIFVHVHI_ 0 0 0 REV__L1PA8_dup5868|chr11:83200984-83202586:-|1.0753577814096096|0.1622837653160103|2.73|151.0|58|1|anti-sense REV__L1PA8_dup5868|chr11:83200984-83202586:-|1.0753577814096096|0.1622837653160103|2.73|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_2 6 482.2849426269531 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 35.617 1 39.305 38.805 39.805 3.6877 0 0 0 0.40738 1 5894 5894 0.79363 0 1 + 47943 29866 30234 30248 55384 55384 0.08738975756330092 VIFVLESVFKL 11 Unmodified _VIFVLESVFKL_ 0 0 0 nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G nc|ENSG00000006283|O43497-27|CACNA1G MSMS UPN48_class_I_Rep_2 6 647.0345458984375 2 647.394482 1292.77441 NaN NaN NaN NaN NaN NaN NaN 51.276 1 54.944 54.444 55.444 3.6679 0 0 0 0.38417 1 10553 10553 2.4985 1.0166 1 47944 715 30235 30249 55385 55385 0.13973450336311544 VIFWWMLK 8 Unmodified _VIFWWMLK_ 0 0 0 L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|182|2|anti-sense L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|182|2|anti-sense L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|182|2|anti-sense MSMS UPN46_class_I_Rep_3 1 561.8115844726562 2 561.812073 1121.60959 NaN NaN NaN NaN NaN NaN NaN 39.806 1 39.806 39.306 40.306 0 0 0 0 0.40738 1 7678 7678 0.79363 0 1 47945 15034 30236 30250 55386 55386 0.053653597155062016 VIGDGLHLAY 10 Unmodified _VIGDGLHLAY_ 0 0 0 REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 529.2889404296875 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 58.662 1 62.149 61.649 62.649 3.487 0 0 0 0.53105 1 12820 12820 14.838 0 1 + 47946 29347 30237 30251 55387 55387 0.034377429602727716 VIGDGLHLAY 10 Unmodified _VIGDGLHLAY_ 0 0 0 REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2881469726562 2 529.287474 1056.5604 0.50397 0.00026674 0.12328 6.5249E-05 0.62725 0.00033199 529.2875696383627 58.743 0.55887 62.242 61.903 62.462 3.4987 41 33 2 0 0 0 0.54466 1 12855 12855 6.2058 0 1 147400 + 47947 29347 30237 30251 55388 55388 0.034377429602727716 VIGDGLHLAY 10 Unmodified _VIGDGLHLAY_ 0 0 0 REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 529.2882690429688 2 529.287474 1056.5604 0.43065 0.00022794 0.14686 7.7729E-05 0.57751 0.00030567 529.2875153531795 58.451 0.50109 61.974 61.775 62.276 3.5231 47 33 2 0 0 0 0.46161 1 12683 12683 14.838 0 1 109330 + 47948 29347 30237 30251 55389 55389 0.034377429602727716 VIGDGLHLAY 10 Unmodified _VIGDGLHLAY_ 0 0 0 REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense REV__L1PA16_dup12294|chr15:91998470-91999292:+|1.2422693063453911|0.0145542134268055|6.42|151.0|15|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 529.3162231445312 2 529.287474 1056.5604 0.43065 0.00022794 0.14686 7.7729E-05 0.57751 0.00030567 529.2875153531795 58.451 0.50109 61.974 61.775 62.276 3.5231 47 33 2 0 0 0 0.84575 1 12713 12713 10.074 0 1 109330 + 47949 29347 30237 30251 55390 55390 0.034377429602727716 VIGGNLVQ 8 Unmodified _VIGGNLVQ_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP UPN48_class_I_Rep_3 7 400.1813049316406 2 400.237253 798.459953 0.096572 3.8652E-05 1.4908 0.00059665 1.5873 0.00063531 400.2378375322664 109.09 0.11136 112.76 112.73 112.84 3.6751 22 14 2 0 0 0 0.72333 1 25892 25892 0 0 1 1383700 + 47950 18881 30238 30252 55391 55391 0.052661306972822786 VIGILIGSAL 10 Unmodified _VIGILIGSAL_ 0 0 0 L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|312|2|anti-sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|312|2|anti-sense L1MA5_dup2056|chr7:135084214-135091290:-|2.083276687536804|0.4132939054573382|2.33|151.0|312|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 477.6975402832031 2 478.312961 954.611368 0.26675 0.00012759 -0.28716 -0.00013735 -0.020414 -9.7644E-06 478.3127612938109 61.683 0.60725 65.15 64.887 65.494 3.4678 72 55 2 0 0 0 0.84575 1 13669 13669 3.5965 0 1 155110 47951 9882 30239 30253 55392 55392 0.13224692005132965 VIGPVVRKK 9 Unmodified _VIGPVVRKK_ 0 0 0 REV__ENSG00000146109|ENST00000274849|ABT1 REV__ENSG00000146109|ENST00000274849|ABT1 MSMS UPN46_class_I_Rep_3 1 498.3401794433594 2 498.339844 994.665135 NaN NaN NaN NaN NaN NaN NaN 38.425 1 38.425 37.925 38.925 0 0 0 0 0.40038 1 7314 7314 0.6015 0 1 + 47952 19530 30240 30254 55393 55393 0.16758909227507957 VIGSGPIYVI 10 Unmodified _VIGSGPIYVI_ 0 0 0 REV__L1PA16_dup4466|chr5:62325467-62325909:+|2.04292995623392|0.0355242958168496|5.85|151.0|22|2|anti-sense REV__L1PA16_dup4466|chr5:62325467-62325909:+|2.04292995623392|0.0355242958168496|5.85|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_2 6 509.30072021484375 2 509.302593 1016.59063 NaN NaN NaN NaN NaN NaN NaN 55.599 1 59.155 58.655 59.655 3.5559 0 0 0 0.53105 1 11865 11865 10.074 0 1 + 47953 29383 30241 30255 55394 55394 0.08300101625468415 VIHFLISLS 9 Unmodified _VIHFLISLS_ 0 0 0 REV__L1MC4a_dup7543|chr13:28064591-28065359:+|1.5373109046094893|0.0014322961415384|10.07|151.0|32|3|sense REV__L1MC4a_dup7543|chr13:28064591-28065359:+|1.5373109046094893|0.0014322961415384|10.07|151.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 514.7997436523438 2 514.810585 1027.60662 NaN NaN NaN NaN NaN NaN NaN 87.599 1 91.236 90.736 91.736 3.6372 0 0 0 0.39428 1 21893 21893 2.0598 0 1 + 47954 27018 30242 30256 55395 55395 0.0939180786238012 VIHIYHYS 8 Unmodified _VIHIYHYS_ 0 0 0 L1MC2_dup855|chr2:159799179-159800230:+|1.3474644392181176|0.2142704221908549|2.65|151.0|49|1|anti-sense L1MC2_dup855|chr2:159799179-159800230:+|1.3474644392181176|0.2142704221908549|2.65|151.0|49|1|anti-sense L1MC2_dup855|chr2:159799179-159800230:+|1.3474644392181176|0.2142704221908549|2.65|151.0|49|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 516.2692260742188 2 516.269084 1030.52362 0.2677 0.0001382 -0.052161 -2.6929E-05 0.21554 0.00011128 516.2687801914768 51.938 0.69288 55.461 55.146 55.839 3.5227 117 72 3 0 0 0 0.82752 1 10696 10696 15.768 2.2603 1 498800 47955 11285 30243 30257 55396 55396 0.009574911343634085 VIHKFLHP 8 Unmodified _VIHKFLHP_ 0 0 0 REV__L1MEf_dup7608|chr10:87136891-87137842:+|1.9008974255552136|0.0731198095931648|4.7|151.0|38|1|anti-sense REV__L1MEf_dup7608|chr10:87136891-87137842:+|1.9008974255552136|0.0731198095931648|4.7|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.79595947265625 2 495.797812 989.581071 NaN NaN NaN NaN NaN NaN NaN 114.43 1 118.09 117.59 118.59 3.6511 0 0 0 0.40738 1 27207 27207 0.79363 0 1 + 47956 28685 30244 30258 55397 55397 0.0858637813059886 VIHMYKIG 8 Unmodified _VIHMYKIG_ 0 0 0 REV__L1MB4_dup7385|chr16:47105212-47106484:+|1.0940565813838952|0.012973547154818|6.4|150.0|75|3|anti-sense REV__L1MB4_dup7385|chr16:47105212-47106484:+|1.0940565813838952|0.012973547154818|6.4|150.0|75|3|anti-sense MSMS UPN48_class_I_Rep_2 6 480.7707824707031 2 480.770406 959.526258 NaN NaN NaN NaN NaN NaN NaN 24.557 1 28.196 27.696 28.696 3.6395 0 0 0 0.40604 1 2870 2870 2.5775 0 1 + 47957 26012 30245 30259 55398 55398 0.04487623267687013 VIHRLRYL 8 Unmodified _VIHRLRYL_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|280|3|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|280|3|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|280|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 535.3356323242188 2 535.335093 1068.65563 0.34215 0.00018316 0.31726 0.00016984 0.65941 0.00035301 535.3351622342724 108.76 0.54372 112.39 112.2 112.75 3.6321 235 63 5 0 0 0 0.82752 1 26294 26294 5.7604 5.7604 1 105100000 47958 10705 30246 30260 55399 55399 0.12405140941996251 VIHTQTQTY 9 Unmodified _VIHTQTQTY_ 0 0 0 nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21 nc|ENSG00000214193|A4FU49|SH3D21 nc|ENSG00000214193|A4FU49|SH3D21 MULTI-MSMS UPN46_class_I_Rep_3 1 545.7786865234375 2 545.780013 1089.54547 0.084972 4.6376E-05 -0.52504 -0.00028655 -0.44006 -0.00024018 545.7796382841062 28.318 0.59059 28.318 28.042 28.633 0 58 43 2 0 0 0 0.36392 1 4296 4296 10.074 10.074 1 90293 47959 5611 30247 30261 55400 55400 0.0042825109228488145 VIHVYVRF 8 Unmodified _VIHVYVRF_ 0 0 0 REV__L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|169|1|anti-sense REV__L1PA2_dup4101|chr13:49152514-49158535:-|3.296053512891269|0.2669854085174408|3.63|151.0|169|1|anti-sense MSMS UPN48_class_I_Rep_1 5 516.8052368164062 2 516.803094 1031.59164 NaN NaN NaN NaN NaN NaN NaN 33.855 1 37.375 36.875 37.875 3.5201 0 0 0 0.40604 1 5338 5338 2.5775 1.7838 1 + 47960 29496 30248 30262 55401 55401 0.07710360785040393 VIIAKFNR 8 Unmodified _VIIAKFNR_ 0 0 0 REV__L1M4a1_dup1021|chr5:177644584-177646198:-|1.7637274126722595|0.0822890490992092|4.42|151.0|31|2|sense REV__L1M4a1_dup1021|chr5:177644584-177646198:-|1.7637274126722595|0.0822890490992092|4.42|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 480.8009948730469 2 480.803094 959.591636 NaN NaN NaN NaN NaN NaN NaN 91.078 1 91.078 90.578 91.578 0 0 0 0 0.40746 1 21982 21982 0.69038 0 1 + 47961 24474 30249 30263 55402 55402 0.1102236078503438 VIIDVKPK 8 Unmodified _VIIDVKPK_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MSMS UPN48_class_I_Rep_3 7 456.3003845214844 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 42.378 1 46.02 45.52 46.52 3.6415 0 0 0 0.40643 1 7759 7759 2.0598 0 1 47962 1639 30250 30264 55403 55403 0.1262842283365444 VIIGNFKF 8 Unmodified _VIIGNFKF_ 0 0 0 REV__HERVL-int_dup750|chr5:10720334-10722105:+|1.3596031663331412|0.0272963087335707|5.64|150.0|59|1|anti-sense REV__HERVL-int_dup750|chr5:10720334-10722105:+|1.3596031663331412|0.0272963087335707|5.64|150.0|59|1|anti-sense MSMS UPN48_class_I_Rep_2 6 469.3280029296875 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 37.123 1 40.826 40.326 41.326 3.7021 0 0 0 0.40746 1 6318 6318 0.69038 0 1 + 47963 23897 30251 30265 55404 55404 0.07247867145144937 VIIGVWYL 8 Unmodified _VIIGVWYL_ 0 0 0 REV__L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|13|1|sense REV__L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|13|1|sense MSMS UPN47_class_I_Rep_2 3 481.7872314453125 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 115.24 1 118.74 118.24 119.24 3.5039 0 0 0 0.40738 1 28091 28091 0.79363 0 1 + 47964 28441 30252 30266 55405 55405 0.08137037804931424 VIIGVWYL 8 Unmodified _VIIGVWYL_ 0 0 0 REV__L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|13|1|sense REV__L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 481.7875671386719 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.25 117.75 118.75 3.6616 0 0 0 0.40738 1 27393 27393 0.79363 0 1 + 47965 28441 30252 30266 55406 55406 0.08137037804931424 VIIILVPKPK 10 Unmodified _VIIILVPKPK_ 0 0 0 L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 560.343017578125 2 560.396828 1118.7791 0.51113 0.00028644 -2.7996 -0.0015689 -2.2885 -0.0012824 560.3952646834563 107.97 0.054382 111.61 111.57 111.63 3.6355 6 2 3 0 0 0 0.84575 1 26486 26486 0 0 1 1042700 47966 12489 30253 30267 55407 55407 0.22446379269740646 VIIILVPKPK 10 Unmodified _VIIILVPKPK_ 0 0 0 L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense L1ME2_dup1560|chr2:99919682-99922714:+|1.231789582090338|0.0183589766150399|6.07|145.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 560.396828 1118.7791 0.41939 0.00023502 1.5454 0.00086604 1.9648 0.0011011 560.3971459559381 108.06 0.080879 111.74 111.67 111.75 3.6813 0.068598 0.0045999 NaN 0 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3364600 47967 12489 30253 30267 0.22446379269740646 VIIKGTQVY 9 Unmodified _VIIKGTQVY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN46_class_I_Rep_3 1 510.8080749511719 2 510.808042 1019.60153 0.28802 0.00014712 -0.22329 -0.00011406 0.064731 3.3065E-05 510.8077701407269 45.53 0.51859 45.53 45.176 45.695 0 67 47 2 0 0 0 0.097406 3 9247 9211;9247;9291 34.402 10.381 1 255030 47968 3340 30254 30268 55408;55409;55410 55409 0.09251503999769284 VIIKKKKVSS 10 Unmodified _VIIKKKKVSS_ 0 0 0 REV__L1MC4_dup20076|chr15:49819788-49821296:-|1.2270383787276182|0.0064102183337214|7.58|151.0|34|2|sense REV__L1MC4_dup20076|chr15:49819788-49821296:-|1.2270383787276182|0.0064102183337214|7.58|151.0|34|2|sense MSMS UPN46_class_I_Rep_3 1 565.3114013671875 2 565.386991 1128.75943 NaN NaN NaN NaN NaN NaN NaN 76.809 1 76.809 76.309 77.309 0 0 0 0 0.53105 1 17938 17938 0.35063 0 1 + 47969 26854 30255 30269 55411 55411 0.20020003258991892 VIIKRSFHP 9 Unmodified _VIIKRSFHP_ 0 0 0 L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|1|1|sense L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|1|1|sense L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 548.8351440429688 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 115.47 1 118.95 118.45 119.45 3.4802 0 0 0 0.4007 1 28397 28397 0.52476 0 1 47970 12425 30256 30270 55412 55412 0.11129721222141598 VIILLVIVLVL 11 Unmodified _VIILLVIVLVL_ 0 0 0 L1MC5_dup4819|chr5:146475727-146476619:-|1.1045649980709562|0.0915117953200685|3.59|150.0|4|1|sense L1MC5_dup4819|chr5:146475727-146476619:-|1.1045649980709562|0.0915117953200685|3.59|150.0|4|1|sense L1MC5_dup4819|chr5:146475727-146476619:-|1.1045649980709562|0.0915117953200685|3.59|150.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 603.9429931640625 2 603.943611 1205.87267 NaN NaN NaN NaN NaN NaN NaN 77.868 1 77.868 77.368 78.368 0 0 0 0 0.38417 1 18218 18218 0 0 1 47971 11684 30257 30271 55413 55413 0.27796678652157425 VIINQIYEA 9 Unmodified _VIINQIYEA_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1;ENST00000570439.1_1_17:7251430-7251541:+|nuORF;ENST00000576594.1_1_17:7251274-7251541:+|nuORF ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS UPN46_class_I_Rep_3 1 531.7949829101562 2 531.795132 1061.57571 0.27431 0.00014588 -0.4819 -0.00025627 -0.20759 -0.00011039 531.794828212056 64.844 0.38309 64.844 64.555 64.938 0 56 37 2 0 0 0 0.10568 2 14589 14589;14632 32.786 18.88 1 191360 47972 1105 30258 30272 55414;55415 55414 0.04738609757487211 VIITFSKV 8 Unmodified _VIITFSKV_ 0 0 0 L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|55|2|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|55|2|sense L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|55|2|sense MSMS UPN47_class_I_Rep_1 2 453.7853088378906 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 54.771 1 58.273 57.773 58.773 3.5014 0 0 0 0.40625 1 12380 12380 2.3027 0 1 47973 15429 30259 30273 55416 55416 0.10204733942327948 VIIYRLSSR 9 Unmodified _VIIYRLSSR_ 0 0 0 REV__L1PREC2_dup151|chr1:85663669-85664507:-|1.1771454189956627|0.1609212883907121|2.87|151.0|5|1|sense REV__L1PREC2_dup151|chr1:85663669-85664507:-|1.1771454189956627|0.1609212883907121|2.87|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.8374633789062 2 553.837665 1105.66078 0.13888 7.6916E-05 -0.33047 -0.00018303 -0.1916 -0.00010611 553.8375125588135 43.429 0.86548 46.671 46.338 47.203 3.2419 83 51 2 0 0 0 0.48846 1 9142 9142 1.8442 0.19162 1 91182 + 47974 30686 30260 30274 55417 55417 0.11217400013924816 VIKFNIYFWFH 11 Unmodified _VIKFNIYFWFH_ 0 0 0 REV__L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense REV__L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 505.6061096191406 3 505.271207 1512.79179 0.18342 9.2676E-05 0.95854 0.00048432 1.142 0.000577 505.6060305326269 41.7 0.31089 45.346 45.263 45.574 3.6458 49 32 2 0 0 0 0.68081 1 7548 7548 0.45452 0.45452 1 145110 + 47975 29230 30261 30275 55418 55418 0.05590790661972278 VIKFNIYFWFH 11 Unmodified _VIKFNIYFWFH_ 0 0 0 REV__L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense REV__L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 505.271207 1512.79179 0.24416 0.00012337 1.0967 0.00055414 1.3409 0.00067751 505.27172999201264 41.522 0.25297 45.272 45.085 45.338 3.7508 -0.036866 0.00013774 NaN 0.45452 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 107060 + 47976 29230 30261 30275 0.05590790661972278 VIKFNIYFWFH 11 Unmodified _VIKFNIYFWFH_ 0 0 0 REV__L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense REV__L1PA15_dup277|chr1:158967383-158969063:+|1.2493160250770086|0.1158230559408522|3.43|150.0|68|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 505.271207 1512.79179 0.18342 9.2676E-05 0.95854 0.00048432 1.142 0.000577 505.6060305326269 41.7 0.31089 45.346 45.263 45.574 3.6458 0.036866 -7.1733E-05 NaN 0.45452 49 32 2 NaN NaN NaN NaN 0 NaN NaN 0 145110 + 47977 29230 30261 30275 0.05590790661972278 VIKFYALSF 9 Unmodified _VIKFYALSF_ 0 0 0 REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|65|2|anti-sense REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|65|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 543.7803344726562 2 544.312961 1086.61137 0.39361 0.00021425 -1.1315 -0.00061592 -0.73794 -0.00040167 544.3125723968418 69.053 0.078209 72.421 72.361 72.439 3.3678 8 5 2 0 0 0 0.12444 1 16698 16698 0.52476 0 1 34808 + 47978 24183 30262 30276 55419 55419 0.07152692005115568 VIKIKEKT 8 Unmodified _VIKIKEKT_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MULTI-MSMS UPN47_class_I_Rep_1 2 479.8185119628906 2 479.81841 957.622267 -0.30899 -0.00014826 -0.30753 -0.00014756 -0.61652 -0.00029582 479.8182301238954 33.406 0.52854 37.104 36.813 37.342 3.6983 55 34 2 0 0 0 0.82752 2 5896 5855;5896 13.906 1.6654 1 92533 + 47979 19102 30263 30277 55420;55421 55421 0.14176094379399728 VIKIKEKT 8 Unmodified _VIKIKEKT_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MULTI-MSMS UPN47_class_I_Rep_2 3 479.8183288574219 2 479.81841 957.622267 -0.2274 -0.00010911 -0.022391 -1.0743E-05 -0.24979 -0.00011986 479.81835155029773 33.654 0.66916 37.094 36.849 37.518 3.4398 64 40 2 0 0 0 0.82752 2 5974 5974;6014 10.824 10.824 1 89566 + 47980 19102 30263 30277 55422;55423 55422 0.14176094379399728 VIKIKEKT 8 Unmodified _VIKIKEKT_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MULTI-MSMS UPN47_class_I_Rep_3 4 479.81805419921875 2 479.81841 957.622267 -0.48855 -0.00023442 0.12897 6.1884E-05 -0.35958 -0.00017253 479.818407617877 34.034 0.59364 37.309 36.911 37.504 3.2748 76 40 2 0 0 0 0.82752 2 6093 6093;6177 7.2892 6.7232 1 97426 + 47981 19102 30263 30277 55424;55425 55424 0.14176094379399728 VIKKKEQKN 9 Unmodified _VIKKKEQKN_ 0 0 0 REV__L1M3f_dup57|chr1:213185668-213186913:-|1.2307813740649065|0.0196004343331974|5.97|151.0|12|1|sense REV__L1M3f_dup57|chr1:213185668-213186913:-|1.2307813740649065|0.0196004343331974|5.97|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 557.852294921875 2 557.850773 1113.68699 NaN NaN NaN NaN NaN NaN NaN 41.719 1 45.225 44.725 45.725 3.506 0 0 0 0.40098 1 7636 7636 0.45834 0 1 + 47982 24341 30264 30278 55426 55426 0.13469669185428756 VIKLFLRGRP 10 Unmodified _VIKLFLRGRP_ 0 0 0 ENST00000479185.1_1_2:218746916-218750490:-|nuORF ENST00000479185.1_1_2:218746916-218750490:-|nuORF ENST00000479185.1_1_2:218746916-218750490:-|nuORF MSMS UPN47_class_I_Rep_3 4 599.6908569335938 2 599.892775 1197.771 NaN NaN NaN NaN NaN NaN NaN 34.197 1 37.472 36.972 37.972 3.2748 0 0 0 0.53105 1 6189 6189 0.40072 0.050084 1 47983 6988 30265 30279 55427 55427 0.18002245072966616 VIKLQPLF 8 Unmodified _VIKLQPLF_ 0 0 0 L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|18|2|anti-sense L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|18|2|anti-sense L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_2 6 479.3094787597656 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 44.473 1 48.235 47.735 48.735 3.7617 0 0 0 0.40738 1 8479 8479 0.79363 0 1 47984 11668 30266 30280 55428 55428 0.12585013213310958 VIKLQPLF 8 Unmodified _VIKLQPLF_ 0 0 0 L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|18|2|anti-sense L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|18|2|anti-sense L1MC5_dup14211|chr19:10176866-10177125:+|1.151864762557423|0.0242605280181498|5.57|151.0|18|2|anti-sense MSMS UPN48_class_I_Rep_2 6 479.3100280761719 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 59.662 1 63.148 62.648 63.648 3.4868 0 0 0 0.40738 1 13108 13108 0.79363 0 1 47985 11668 30266 30280 55429 55429 0.12585013213310958 VIKMLQTA 8 Unmodified _VIKMLQTA_ 0 0 0 ENSG00000067704|ENST00000366922|IARS2 ENSG00000067704|ENST00000366922|IARS2 ENSG00000067704|ENST00000366922|IARS2 MULTI-MSMS UPN46_class_I_Rep_3 1 452.2694091796875 2 452.270238 902.525924 0.11968 5.4127E-05 -1.7323 -0.00078349 -1.6127 -0.00072936 452.26936795973705 38.572 0.069 38.572 38.553 38.622 0 5 4 2 0 0 0 0.82752 1 7357 7357 2.5775 0 1 540500 47986 1038 30267 30281 55430 55430 0.07076203547808291 VIKRKQKWL 9 Unmodified _VIKRKQKWL_ 0 0 0 L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|35|2|sense L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|35|2|sense L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|35|2|sense MSMS UPN47_class_I_Rep_3 4 600.24853515625 2 599.892775 1197.771 NaN NaN NaN NaN NaN NaN NaN 38.531 1 41.772 41.272 42.272 3.2414 0 0 0 0.4007 1 7512 7512 0.52476 0 1 47987 11909 30268 30282 55431 55431 0.18002245072966616 VIKRLWVHE 9 Unmodified _VIKRLWVHE_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS UPN48_class_I_Rep_1 5 590.302734375 2 590.353483 1178.69241 NaN NaN NaN NaN NaN NaN NaN 43.963 1 47.476 46.976 47.976 3.5132 0 0 0 0.4007 1 8312 8312 0.52476 0 1 47988 2268 30269 30283 55432 55432 0.11021392767884208 VIKVESNPNH 10 Unmodified _VIKVESNPNH_ 0 0 0 MER90a_dup979|chr15:28671988-28672498:-|1.0866648703371915|0.4225505431445046|1.36|150.0|9|2|sense MER90a_dup979|chr15:28671988-28672498:-|1.0866648703371915|0.4225505431445046|1.36|150.0|9|2|sense MER90a_dup979|chr15:28671988-28672498:-|1.0866648703371915|0.4225505431445046|1.36|150.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 568.8052978515625 2 568.806562 1135.59857 NaN NaN NaN NaN NaN NaN NaN 43.968 1 47.21 46.71 47.71 3.2419 0 0 0 0.53105 1 9175 9175 1.4819 0 1 47989 16232 30270 30284 55433 55433 0.03619628874935188 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.9724731445312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 38.402 1 42.067 41.567 42.567 3.6652 0 0 0 0.38417 1 7396 7396 0 0 1 + 47990 28043 30271 30285 55434 55434 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.974365234375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 38.781 1 42.447 41.947 42.947 3.6652 0 0 0 0.38417 1 7512 7512 0 0 1 + 47991 28043 30271 30285 55435 55435 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 641.3074340820312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 39.283 1 42.948 42.448 43.448 3.6652 0 0 0 0.38417 1 7665 7665 0 0 1 + 47992 28043 30271 30285 55436 55436 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.6409912109375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 40.607 1 44.279 43.779 44.779 3.6719 0 0 0 0.38417 1 8070 8070 0 0 1 + 47993 28043 30271 30285 55437 55437 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.6404418945312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 40.958 1 44.63 44.13 45.13 3.6719 0 0 0 0.38417 1 8176 8176 0 0 1 + 47994 28043 30271 30285 55438 55438 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.9734497070312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.044 1 45.723 45.223 46.223 3.6792 0 0 0 0.38417 1 8506 8506 0 0 1 + 47995 28043 30271 30285 55439 55439 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.9730834960938 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.222 1 45.901 45.401 46.401 3.6792 0 0 0 0.38417 1 8561 8561 0 0 1 + 47996 28043 30271 30285 55440 55440 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_1 2 640.9739990234375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.362 1 46.041 45.541 46.541 3.6792 0 0 0 0.38417 1 8603 8603 0 0 1 + 47997 28043 30271 30285 55441 55441 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 640.9739990234375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 38.854 1 42.232 41.732 42.732 3.3785 0 0 0 0.38417 1 7567 7567 0 0 1 + 47998 28043 30271 30285 55442 55442 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 640.9744262695312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 39.469 1 42.847 42.347 43.347 3.3785 0 0 0 0.38417 1 7755 7755 0 0 1 + 47999 28043 30271 30285 55443 55443 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 640.9741821289062 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.247 1 45.608 45.108 46.108 3.3611 0 0 0 0.38417 1 8596 8596 0 0 1 + 48000 28043 30271 30285 55444 55444 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_2 3 640.9744262695312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.865 1 47.223 46.723 47.723 3.358 0 0 0 0.38417 1 9091 9091 0 0 1 + 48001 28043 30271 30285 55445 55445 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 641.307373046875 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 39.549 1 42.787 42.287 43.287 3.238 0 0 0 0.38417 1 7826 7826 0 0 1 + 48002 28043 30271 30285 55446 55446 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 641.3074951171875 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 40.172 1 43.409 42.909 43.909 3.2372 0 0 0 0.38417 1 8018 8018 0 0 1 + 48003 28043 30271 30285 55447 55447 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 640.6387329101562 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.484 1 45.724 45.224 46.224 3.2394 0 0 0 0.38417 1 8721 8721 0 0 1 + 48004 28043 30271 30285 55448 55448 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 640.9744262695312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.507 1 45.746 45.246 46.246 3.2394 0 0 0 0.38417 1 8728 8728 0 0 1 + 48005 28043 30271 30285 55449 55449 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 640.9725952148438 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.686 1 45.925 45.425 46.425 3.2394 0 0 0 0.38417 1 8783 8783 0 0 1 + 48006 28043 30271 30285 55450 55450 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 640.9712524414062 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.713 1 45.952 45.452 46.452 3.2394 0 0 0 0.38417 1 8791 8791 0 0 1 + 48007 28043 30271 30285 55451 55451 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 640.9739990234375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 42.887 1 46.126 45.626 46.626 3.2394 0 0 0 0.38417 1 8845 8845 0 0 1 + 48008 28043 30271 30285 55452 55452 0.30314574666363114 VIKVKIIIVKK 11 Unmodified _VIKVKIIIVKK_ 0 0 0 REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense REV__L1ME3B_dup117|chr1:44444114-44444428:-|3.357749807258577|0.0005644642269854|12.54|150.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 640.9734497070312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 37.833 1 41.493 40.993 41.993 3.6595 0 0 0 0.38417 1 6424 6424 0 0 1 + 48009 28043 30271 30285 55453 55453 0.30314574666363114 VIKWYLYGK 9 Unmodified _VIKWYLYGK_ 0 0 0 L1PA4_dup4384|chr6:2079046-2080788:-|2.4075473970361227|0.0506425865698061|5.57|151.0|64|3|sense L1PA4_dup4384|chr6:2079046-2080788:-|2.4075473970361227|0.0506425865698061|5.57|151.0|64|3|sense L1PA4_dup4384|chr6:2079046-2080788:-|2.4075473970361227|0.0506425865698061|5.57|151.0|64|3|sense MSMS UPN48_class_I_Rep_2 6 585.342041015625 2 585.33951 1168.66447 NaN NaN NaN NaN NaN NaN NaN 47.245 1 50.995 50.495 51.495 3.7494 0 0 0 0.38299 1 9317 9317 4.756 0.81161 1 48010 14351 30272 30286 55454 55454 0.08688069787763197 VILAHIHY 8 Unmodified _VILAHIHY_ 0 0 0 nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A MSMS UPN47_class_I_Rep_1 2 483.28228759765625 2 483.281995 964.549437 NaN NaN NaN NaN NaN NaN NaN 39.66 1 43.327 42.827 43.827 3.6668 0 0 0 0.40738 1 7780 7780 0.79363 0 1 48011 5487 30273 30287 55455 55455 0.06574385376654845 VILDMEDK 8 Unmodified _VILDMEDK_ 0 0 0 ENSG00000174013|ENST00000311630|FBXO45 ENSG00000174013|ENST00000311630|FBXO45 ENSG00000174013|ENST00000311630|FBXO45 MSMS UPN48_class_I_Rep_2 6 481.7868957519531 2 481.746793 961.479033 NaN NaN NaN NaN NaN NaN NaN 32.328 1 35.978 35.478 36.478 3.6497 0 0 0 0.40625 1 4982 4982 2.3027 0 1 48012 4660 30274 30288 55456 55456 -0.003247007939762625 VILEFWRQVLL 11 Unmodified _VILEFWRQVLL_ 0 0 0 ENST00000372706.5_1_1:40943455-40944827:+|nuORF ENST00000372706.5_1_1:40943455-40944827:+|nuORF ENST00000372706.5_1_1:40943455-40944827:+|nuORF MSMS UPN48_class_I_Rep_2 6 472.6179504394531 3 472.618495 1414.83366 NaN NaN NaN NaN NaN NaN NaN 92.469 1 96.232 95.732 96.732 3.7629 0 0 0 0.38417 1 22004 22004 0.45452 0.33165 1 48013 6401 30275 30289 55457 55457 0.14283346350521242 VILFFFLKH 9 Unmodified _VILFFFLKH_ 0 0 0 REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|237|1|anti-sense REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|237|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.3527221679688 2 582.35242 1162.69029 NaN NaN NaN NaN NaN NaN NaN 95.12 1 98.53 98.03 99.03 3.4095 0 0 0 0.40038 1 23654 23654 0.6015 0 1 + 48014 23527 30276 30290 55458 55458 0.11544964030076699 VILFFFLKH 9 Unmodified _VILFFFLKH_ 0 0 0 REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|237|1|anti-sense REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|237|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.353271484375 2 582.35242 1162.69029 0.49248 0.0002868 0.78261 0.00045575 1.2751 0.00074255 582.3530272083946 101.21 0.12761 105.02 104.92 105.05 3.8153 21 17 2 0 0 0 0.50015 1 23950 23950 0.6015 0 1 102110 + 48015 23527 30276 30290 55459 55459 0.11544964030076699 VILFFFLKH 9 Unmodified _VILFFFLKH_ 0 0 0 REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|237|1|anti-sense REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|237|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 582.35242 1162.69029 0.48029 0.0002797 0.56299 0.00032786 1.0433 0.00060756 582.3525860611327 101.12 0.074303 104.86 104.82 104.89 3.7417 -0.081312 -0.00019621 NaN 0.6015 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 87849 + 48016 23527 30276 30290 0.11544964030076699 VILHAEDRP 9 Unmodified _VILHAEDRP_ 0 0 0 REV__L1PA7_dup7197|chr9:14599777-14602159:+|1.7236013421217269|0.240684255869607|2.84|151.0|148|3|anti-sense REV__L1PA7_dup7197|chr9:14599777-14602159:+|1.7236013421217269|0.240684255869607|2.84|151.0|148|3|anti-sense MSMS UPN47_class_I_Rep_2 3 525.2880859375 2 525.290548 1048.56654 NaN NaN NaN NaN NaN NaN NaN 54.103 1 57.421 56.921 57.921 3.3187 0 0 0 0.39518 1 12204 12204 1.8442 0 1 + 48017 29652 30277 30291 55460 55460 0.044202611917853574 VILHRIRKN 9 Unmodified _VILHRIRKN_ 0 0 0 L1PA16_dup8771|chrX:110074178-110078510:-|3.3407185047048777|0.0231534923256516|7.17|151.0|36|1|sense;L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|111|3|sense L1PA16_dup8771|chrX:110074178-110078510:-|3.3407185047048777|0.0231534923256516|7.17|151.0|36|1|sense L1PA16_dup8771|chrX:110074178-110078510:-|3.3407185047048777|0.0231534923256516|7.17|151.0|36|1|sense MSMS UPN47_class_I_Rep_2 3 574.8739013671875 2 574.872374 1147.73019 NaN NaN NaN NaN NaN NaN NaN 102.67 1 106.19 105.69 106.69 3.5231 0 0 0 0.4007 1 24986 24986 0.52476 0 1 48018 14130 30278 30292 55461 55461 0.16223903753370905 VILICLRKYRR 11 Unmodified _VILICLRKYRR_ 0 0 0 Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|14|2|sense Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|14|2|sense Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.3027648925781 3 478.302624 1431.88604 0.20727 9.914E-05 0.12493 5.9753E-05 0.3322 0.00015889 478.3025998673249 65.356 1.4379 68.811 68.288 69.726 3.4541 158 104 2 0 0 0 0.68478 1 14719 14719 0.094841 0 1 1143100 48019 444 30279 30293 55462 55462 0.18737606212471292 VILIHNLLG 9 Unmodified _VILIHNLLG_ 0 0 0 REV__L1MB2_dup1621|chr3:149940682-149941889:-|1.6613491765845303|0.0613613391736425|4.76|151.0|63|2|anti-sense REV__L1MB2_dup1621|chr3:149940682-149941889:-|1.6613491765845303|0.0613613391736425|4.76|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_1 2 496.2817687988281 2 496.318577 990.622602 NaN NaN NaN NaN NaN NaN NaN 62.528 1 65.893 65.393 66.393 3.3649 0 0 0 0.2088 1 14737 14737 15.847 0 1 + 48020 25704 30280 30294 55463 55463 0.12691514099265078 VILKLEWRL 9 Unmodified _VILKLEWRL_ 0 0 0 Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense MSMS UPN47_class_I_Rep_2 3 585.3743286132812 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 38.282 1 41.67 41.17 42.17 3.3879 0 0 0 0.4007 1 7394 7394 0.52476 0 1 48021 450 30281 30295 55464 55464 0.15559734087514698 VILKLEWRL 9 Unmodified _VILKLEWRL_ 0 0 0 Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense Charlie16a_dup109|chr1:147270395-147270727:-|1.4961770054343675|0.3106419478992103|2.27|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 585.3749389648438 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 31.538 1 35.072 34.572 35.572 3.5342 0 0 0 0.40098 1 4679 4679 0.45834 0 1 48022 450 30281 30295 55465 55465 0.15559734087514698 VILLEKMKHP 10 Unmodified _VILLEKMKHP_ 0 0 0 nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5 nc|ENSG00000197168|Q6P3R8|NEK5 nc|ENSG00000197168|Q6P3R8|NEK5 MULTI-MSMS UPN47_class_I_Rep_2 3 604.3668823242188 2 604.365201 1206.71585 0.63461 0.00038354 2.3953 0.0014477 3.0299 0.0018312 604.3665586910711 98.511 0.026482 102 101.99 102.01 3.4897 5 3 2 0 0 0 0.56309 1 24156 24156 1.6526 0 1 784510 48023 5353 30282 30296 55466 55466 0.12076070490206803 VILLQTKP 8 Unmodified _VILLQTKP_ 0 0 0 REV__L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|7|1|sense REV__L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 456.30096435546875 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 41.991 1 45.637 45.137 46.137 3.6458 0 0 0 0.40659 1 7647 7647 1.8442 0.19162 1 + 48024 27135 30283 30297 55467 55467 0.12628422833643071 VILMILIFP 9 Unmodified _VILMILIFP_ 0 0 0 L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|84|1|anti-sense L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|84|1|anti-sense L1PB4_dup7016|chr18:80053229-80055155:+|1.200685971543131|0.4443018884898846|1.43|151.0|84|1|anti-sense MSMS UPN47_class_I_Rep_3 4 530.27197265625 2 529.837757 1057.66096 NaN NaN NaN NaN NaN NaN NaN 116.34 1 119.81 119.31 120.31 3.462 0 0 0 0.4029 1 28627 28627 0 0 1 48025 15348 30284 30298 55468 55468 0.13443683689615682 VILPNDYFE 9 Unmodified _VILPNDYFE_ 0 0 0 ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1 ENST00000345117.2_1_8:42693107-42698298:-|nuORF ENST00000345117.2_1_8:42693107-42698298:-|nuORF MSMS UPN47_class_I_Rep_3 4 555.277099609375 2 555.279315 1108.54408 NaN NaN NaN NaN NaN NaN NaN 27.38 1 30.722 30.222 31.222 3.3422 0 0 0 0.39428 1 4147 4147 2.0598 0.21551 1 48026 2725 30285 30299 55469 55469 -0.005853829964735269 VILPRKHH 8 Unmodified _VILPRKHH_ 0 0 0 ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1;nc|ENSG00000244687|Q13404-1|UBE2V1 ENST00000453505.6_1_20:48741597-48767785:-|nuORF ENST00000453505.6_1_20:48741597-48767785:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 500.314208984375 2 500.314161 998.613768 0.31258 0.00015639 0.93225 0.00046642 1.2448 0.00062281 500.3144761559575 72.63 0.30045 76.168 76.021 76.321 3.5373 28 22 2 0 0 0 0.72333 1 16946 16946 0.69038 0 1 99430 48027 5706 30286 30300 55470 55470 0.11440585253455993 VILSDLFLETS 11 Unmodified _VILSDLFLETS_ 0 0 0 REV__L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|121|3|anti-sense REV__L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|121|3|anti-sense MSMS UPN46_class_I_Rep_3 1 618.8399047851562 2 618.839736 1235.66492 NaN NaN NaN NaN NaN NaN NaN 12.952 1 12.952 12.452 13.452 0 0 0 0 0.38417 1 254 254 0 0 1 + 48028 28649 30287 30301 55471 55471 0.05651399926296108 VILVFRHF 8 Unmodified _VILVFRHF_ 0 0 0 REV__Tigger7_dup229|chr1:244406409-244407141:+|1.2223331368691783|0.03024787313789|5.34|150.0|34|2|anti-sense REV__Tigger7_dup229|chr1:244406409-244407141:+|1.2223331368691783|0.03024787313789|5.34|150.0|34|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 515.7727661132812 2 515.813462 1029.61237 0.1985 0.00010239 -0.096895 -4.998E-05 0.10161 5.2411E-05 515.8112213890046 57.635 0.13597 60.803 60.764 60.9 3.1681 15 11 2 0 0 0 0.72333 1 13356 13356 2.8892 0 1 64317 + 48029 32810 30288 30302 55472 55472 0.09874951164692902 VILYHLCFC 9 Unmodified _VILYHLCFC_ 0 0 0 ENST00000509020.2_1_4:37870545-37871372:+|nuORF ENST00000509020.2_1_4:37870545-37871372:+|nuORF ENST00000509020.2_1_4:37870545-37871372:+|nuORF MSMS UPN47_class_I_Rep_2 3 555.7769775390625 2 555.777373 1109.54019 NaN NaN NaN NaN NaN NaN NaN 22.809 1 26.254 25.754 26.754 3.4447 0 0 0 0.39326 1 2768 2768 2.3027 0.24298 1 48030 7169 30289 30303 55473 55473 -0.010194672955321948 VIMLFVPVT 9 Unmodified _VIMLFVPVT_ 0 0 0 nc|ENSG00000080815|P49768-4|PSEN1;ENSG00000080815.19,PSEN1,chr14,+,I15.1,73206473,73208823|73|10.01|3|intron;ENSG00000080815.19,PSEN1,chr14,+,I15.1,73206473,73208823|73|10.01|1|intron;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2 nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2 nc|ENSG00000288674|P49810-2|PSEN2 MULTI-MSMS UPN46_class_I_Rep_3 1 509.80389404296875 2 509.803914 1017.59328 0.30512 0.00015555 -0.11842 -6.0371E-05 0.1867 9.5182E-05 509.8037220548258 81.336 0.23771 81.336 81.129 81.367 0 45 24 2 0 0 0 0.48846 1 19165 19165 1.8442 0 1 498540 48031 1206;3326 30290 30304 55474 55474 0.08518233758763927 VIMLLLHI 8 Unmodified _VIMLLLHI_ 0 0 0 ENST00000508878.5_1_5:127359968-127417754:-|nuORF ENST00000508878.5_1_5:127359968-127417754:-|nuORF ENST00000508878.5_1_5:127359968-127417754:-|nuORF MSMS UPN46_class_I_Rep_3 1 476.3062438964844 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 87.169 1 87.169 86.669 87.669 0 0 0 0 0.40738 1 20871 20871 0.79363 0 1 48032 7168 30291 30305 55475 55475 0.12141957341236775 VIMWHNFN 8 Unmodified _VIMWHNFN_ 0 0 0 Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|36|1|anti-sense Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|36|1|anti-sense Tigger1_dup547|chr1:150748746-150749542:+|1.1829297697112595|0.1797632834168007|2.72|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7559204101562 2 530.755287 1059.49602 NaN NaN NaN NaN NaN NaN NaN 32.246 1 35.895 35.395 36.395 3.6497 0 0 0 0.40738 1 4958 4958 0.79363 0 1 48033 33126 30292 30306 55476 55476 -0.03134735397497934 VIMWLPKPL 9 Unmodified _VIMWLPKPL_ 0 0 0 L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense MSMS UPN46_class_I_Rep_3 1 548.8341064453125 2 548.833006 1095.65146 NaN NaN NaN NaN NaN NaN NaN 29.985 1 29.985 29.485 30.485 0 0 0 0 0.40038 1 4821 4821 0.6015 0 1 48034 13993 30293 30307 55477 55477 0.1074591540404981 VIMWLPKPL 9 Unmodified _VIMWLPKPL_ 0 0 0 L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense MSMS UPN46_class_I_Rep_3 1 548.834716796875 2 548.833006 1095.65146 NaN NaN NaN NaN NaN NaN NaN 30.412 1 30.412 29.912 30.912 0 0 0 0 0.40038 1 4949 4949 0.6015 0 1 48035 13993 30293 30307 55478 55478 0.1074591540404981 VIMWLPKPL 9 Unmodified _VIMWLPKPL_ 0 0 0 L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|129|3|anti-sense MSMS UPN46_class_I_Rep_3 1 548.8347778320312 2 548.833006 1095.65146 NaN NaN NaN NaN NaN NaN NaN 31.206 1 31.206 30.706 31.706 0 0 0 0 0.40038 1 5183 5183 0.6015 0 1 48036 13993 30293 30307 55479 55479 0.1074591540404981 VINFQAYCC 9 Unmodified _VINFQAYCC_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MSMS UPN48_class_I_Rep_2 6 530.7330322265625 2 530.733163 1059.45177 NaN NaN NaN NaN NaN NaN NaN 72.742 1 76.307 75.807 76.807 3.5645 0 0 0 0.39326 1 17043 17043 2.3027 0.4585 1 48037 5549 30294 30308 55480 55480 -0.07557507606020408 VINFQAYCC 9 Unmodified _VINFQAYCC_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS UPN48_class_I_Rep_3 7 530.7327270507812 2 530.733163 1059.45177 0.55099 0.00029243 -0.85203 -0.0004522 -0.30104 -0.00015977 530.7326895955497 72.708 0.28842 76.245 76.136 76.424 3.5373 24 21 2 0 0 0 0.48414 1 16986 16986 2.3027 0.24298 1 75961 48038 5549 30294 30308 55481 55481 -0.07557507606020408 VINFQAYCC 9 Unmodified _VINFQAYCC_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 530.733163 1059.45177 0.3609 0.00019154 -0.32947 -0.00017486 0.031434 1.6683E-05 530.7328184371071 72.82 0.28777 76.293 76.187 76.475 3.4732 0.023793 0.00023395 NaN 2.3027 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 59679 48039 5549 30294 30308 -0.07557507606020408 VINGITSIAVF 11 Unmodified _VINGITSIAVF_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S REV__ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS UPN46_class_I_Rep_3 1 567.3314208984375 2 567.331882 1132.64921 0.46369 0.00026307 -0.94258 -0.00053475 -0.47889 -0.00027169 567.3312189589891 86.689 0.24264 86.689 86.523 86.765 0 59 25 4 0 0 0 0.50573 1 20728 20728 7.609 0.50723 1 2297300 + 48040 17913 30295 30309 55482 55482 0.08819158199935373 VINKLELY 8 Unmodified _VINKLELY_ 0 0 0 REV__L1M4c_dup3003|chr16:20688106-20689559:+|2.594034334166804|0.2384112616471539|3.44|149.0|42|3|sense REV__L1M4c_dup3003|chr16:20688106-20689559:+|2.594034334166804|0.2384112616471539|3.44|149.0|42|3|sense MSMS UPN46_class_I_Rep_3 1 496.294189453125 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 77.263 1 77.263 76.763 77.763 0 0 0 0 0.40738 1 18053 18053 0.79363 0 1 + 48041 24593 30296 30310 55483 55483 0.07931815108406681 VINKLYQFF 9 Unmodified _VINKLYQFF_ 0 0 0 REV__L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|102|2|anti-sense REV__L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|102|2|anti-sense MSMS UPN47_class_I_Rep_3 4 586.3287963867188 2 586.329142 1170.64373 NaN NaN NaN NaN NaN NaN NaN 35.828 1 39.083 38.583 39.583 3.2547 0 0 0 0.4007 1 6683 6683 0.52476 0 1 + 48042 27551 30297 30311 55484 55484 0.06523479408110688 VINKQVIFF 9 Unmodified _VINKQVIFF_ 0 0 0 L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|246|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|246|3|anti-sense L1MA3_dup2185|chr4:37574464-37578780:-|3.6835136486761697|0.4736984282605908|2.96|151.0|246|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 553.830078125 2 554.331685 1106.64882 0.51253 0.00028411 0.44334 0.00024576 0.95587 0.00052987 554.3319500933418 81.649 0.073318 85.225 85.181 85.255 3.5753 11 7 2 0 0 0 0.12281 1 19467 19467 4.3292 4.3292 1 145420 48043 9503 30298 30312 55485 55485 0.09975783270760985 VINLKIFFN 9 Unmodified _VINLKIFFN_ 0 0 0 L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|92|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|92|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|92|1|anti-sense MSMS UPN48_class_I_Rep_3 7 554.3320922851562 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 79.485 1 83.128 82.628 83.628 3.6423 0 0 0 0.39518 1 18847 18847 1.8442 0 1 48044 8693 30299 30313 55486 55486 0.09975783270760985 VINQNAKQL 9 Unmodified _VINQNAKQL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS UPN46_class_I_Rep_3 1 514.2978515625 2 514.298373 1026.58219 0.32216 0.00016568 -0.12793 -6.5793E-05 0.19423 9.9891E-05 514.2981812147019 90.923 0.41157 90.923 90.762 91.174 0 62 38 2 0 0 0 0.46869 1 21927 21927 3.9444 3.9444 1 518430 48045 1199 30300 30314 55487 55487 0.06996547708831713 VINRGRSL 8 Unmodified _VINRGRSL_ 0 0 0 MLT1B_dup267|chr1:41163497-41163806:+|1.1673106633128707|0.1049565007677572|3.48|151.0|6|2|sense MLT1B_dup267|chr1:41163497-41163806:+|1.1673106633128707|0.1049565007677572|3.48|151.0|6|2|sense MLT1B_dup267|chr1:41163497-41163806:+|1.1673106633128707|0.1049565007677572|3.48|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 457.7800598144531 2 457.780151 913.545748 0.213 9.7509E-05 -0.038725 -1.7727E-05 0.17428 7.9782E-05 457.779989296158 81.204 0.32354 84.889 84.827 85.15 3.685 74 42 2 0 0 0 0.82752 1 19242 19242 4.3292 0.38484 1 196060 48046 16278 30301 30315 55488 55488 0.08551715602800414 VINRLTNQ 8 Unmodified _VINRLTNQ_ 0 0 0 REV__nc|ENSG00000142556|Q8N883-2|ZNF614 REV__nc|ENSG00000142556|Q8N883-2|ZNF614 MSMS UPN46_class_I_Rep_3 1 479.2770690917969 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 81.397 1 81.397 80.897 81.897 0 0 0 0 0.40746 1 19221 19221 0.69038 0 1 + 48047 19408 30302 30316 55489 55489 0.06031992020302823 VINRLTNQ 8 Unmodified _VINRLTNQ_ 0 0 0 REV__nc|ENSG00000142556|Q8N883-2|ZNF614 REV__nc|ENSG00000142556|Q8N883-2|ZNF614 MSMS UPN48_class_I_Rep_1 5 479.2777404785156 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 72.974 1 76.447 75.947 76.947 3.4732 0 0 0 0.40746 1 17165 17165 0.69038 0 1 + 48048 19408 30302 30316 55490 55490 0.06031992020302823 VINRRKTYQ 9 Unmodified _VINRRKTYQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3441162109375 2 589.343646 1176.67274 0.54401 0.00032061 -1.3333 -0.00078577 -0.78928 -0.00046516 589.3425963447045 85.994 0.13075 85.994 85.879 86.009 0 19 14 2 0 0 0 0.50088 1 20543 20543 0.52476 0 1 119380 48049 12001 30303 30317 55491 55491 0.09147016757151505 VINRRKTYQ 9 Unmodified _VINRRKTYQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.3433837890625 2 589.343646 1176.67274 0.53069 0.00031276 -0.94598 -0.00055751 -0.41529 -0.00024475 589.3429428867161 86.481 0.12164 90.251 90.217 90.339 3.7701 19 16 2 0 0 0 0.49026 1 20539 20539 1.6526 0 1 159870 48050 12001 30303 30317 55492 55492 0.09147016757151505 VINRRKTYQ 9 Unmodified _VINRRKTYQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|26|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 589.342529296875 2 589.343646 1176.67274 0.52869 0.00031158 -1.1413 -0.00067263 -0.61263 -0.00036105 589.3425379696727 87.355 0.081238 91.145 91.103 91.184 3.7905 11 8 2 0 0 0 0.50088 1 20731 20731 0.52476 0 1 96801 48051 12001 30303 30317 55493 55493 0.09147016757151505 VINTNGHSQL 10 Unmodified _VINTNGHSQL_ 0 0 0 REV__L1MB4_dup4056|chr8:140132917-140134264:+|1.418315838479098|0.018264352822564|6.28|151.0|15|1|sense REV__L1MB4_dup4056|chr8:140132917-140134264:+|1.418315838479098|0.018264352822564|6.28|151.0|15|1|sense MSMS UPN47_class_I_Rep_2 3 541.7815551757812 2 541.783087 1081.55162 NaN NaN NaN NaN NaN NaN NaN 47.966 1 51.315 50.815 51.815 3.3492 0 0 0 0.53105 1 10328 10328 2.4985 0.43874 1 + 48052 25970 30304 30318 55494 55494 0.014107693237974672 VINVKKWL 8 Unmodified _VINVKKWL_ 0 0 0 L1ME3_dup8211|chr18:46202926-46203596:+|1.0661498784360677|0.0046861961098606|7.83|151.0|7|1|sense L1ME3_dup8211|chr18:46202926-46203596:+|1.0661498784360677|0.0046861961098606|7.83|151.0|7|1|sense L1ME3_dup8211|chr18:46202926-46203596:+|1.0661498784360677|0.0046861961098606|7.83|151.0|7|1|sense MSMS UPN47_class_I_Rep_3 4 500.31903076171875 2 500.32112 998.627687 NaN NaN NaN NaN NaN NaN NaN 18.137 1 21.491 20.991 21.991 3.3545 0 0 0 0.40746 1 1453 1453 0.69038 0 1 48053 12606 30305 30319 55495 55495 0.12831817961875913 VINVTKSILPQ 11 Unmodified _VINVTKSILPQ_ 0 0 0 HERVIP10FH-int_dup38|chr2:65044777-65046931:-|2.934578858895782|0.0756933018184795|5.28|151.0|49|3|sense HERVIP10FH-int_dup38|chr2:65044777-65046931:-|2.934578858895782|0.0756933018184795|5.28|151.0|49|3|sense HERVIP10FH-int_dup38|chr2:65044777-65046931:-|2.934578858895782|0.0756933018184795|5.28|151.0|49|3|sense MSMS UPN46_class_I_Rep_3 1 606.368408203125 2 606.371538 1210.72852 NaN NaN NaN NaN NaN NaN NaN 73.434 1 73.434 72.934 73.934 0 0 0 0 0.38417 1 17020 17020 4.897 1.9018 1 48054 8232 30306 30320 55496 55496 0.13158805154080255 VINWFRLY 8 Unmodified _VINWFRLY_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|38|1|sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|38|1|sense MSMS UPN46_class_I_Rep_3 1 555.8097534179688 2 555.808377 1109.6022 NaN NaN NaN NaN NaN NaN NaN 13.706 1 13.706 13.206 14.206 0 0 0 0 0.40746 1 449 449 0.69038 0 1 + 48055 23314 30307 30321 55497 55497 0.051783434394792494 VIPVYLVKRL 10 Unmodified _VIPVYLVKRL_ 0 0 0 ENST00000581216.5_2_17:29233661-29233769:-|nuORF ENST00000581216.5_2_17:29233661-29233769:-|nuORF ENST00000581216.5_2_17:29233661-29233769:-|nuORF MSMS UPN47_class_I_Rep_2 3 600.3955078125 2 600.397359 1198.78016 NaN NaN NaN NaN NaN NaN NaN 97.804 1 101.29 100.79 101.79 3.4836 0 0 0 0.53105 1 23993 23993 0.45834 0.057624 1 48056 7556 30308 30322 55498 55498 0.18872593638639046 VIQFKGNFK 9 Unmodified _VIQFKGNFK_ 0 0 0 REV__L1MB4_dup6449|chr12:120821735-120822286:+|1.7877799129893284|0.0173264126100038|6.69|151.0|22|3|sense REV__L1MB4_dup6449|chr12:120821735-120822286:+|1.7877799129893284|0.0173264126100038|6.69|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 540.8142700195312 2 540.813659 1079.61277 0.41258 0.00022313 -0.12421 -6.7174E-05 0.28837 0.00015596 540.813760487 49.286 0.63991 53.004 52.655 53.295 3.7175 57 43 2 0 0 0 0.48846 1 9976 9976 1.8442 0.19162 1 97346 + 48057 26001 30309 30323 55499 55499 0.07614326093880663 VIRALDRD 8 Unmodified _VIRALDRD_ 0 0 0 nc|ENSG00000139880|Q86UP0|CDH24;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0-3|CDH24 nc|ENSG00000139880|Q86UP0|CDH24 nc|ENSG00000139880|Q86UP0|CDH24 MULTI-MSMS UPN47_class_I_Rep_1 2 479.2777099609375 2 479.277441 956.540328 0.13854 6.6398E-05 -0.25052 -0.00012007 -0.11198 -5.3671E-05 479.2771390928401 76.664 0.60101 80.079 79.988 80.589 3.4149 73 56 2 0 0 0 0.82752 1 19099 19099 0.79363 0 1 543510 48058 3157 30310 30324 55500 55500 0.06031992020302823 VIRDVEQQF 9 Unmodified _VIRDVEQQF_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS UPN46_class_I_Rep_3 1 567.2997436523438 2 567.301113 1132.58767 0.42995 0.00024391 -0.17344 -9.8394E-05 0.25651 0.00014552 567.300962044452 45.823 0.6334 45.823 45.577 46.21 0 93 67 3 0 0 0 0.029742 2 9395 9355;9395 57.249 9.5775 1 362020 48059 1152 30311 30325 55501;55502 55502 0.026682265006456873 VIRDVEQQF 9 Unmodified _VIRDVEQQF_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MSMS UPN46_class_I_Rep_3 1 567.3010864257812 2 567.301113 1132.58767 NaN NaN NaN NaN NaN NaN NaN 45.69 1 45.69 45.19 46.19 0 0 0 0 0.10427 1 9313 9313 23.79 7.6407 1 48060 1152 30311 30325 55503 55503 0.026682265006456873 VIREGNHIRR 10 Unmodified _VIREGNHIRR_ 0 0 0 REV__L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|1|1|sense REV__L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|1|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 625.3642578125 2 625.365444 1248.71634 0.68156 0.00042623 -0.61306 -0.00038339 0.068504 4.284E-05 625.3647122935186 102.89 0.20256 102.89 102.81 103.01 0 28 18 2 0 0 0 0.84575 1 25113 25113 1.4819 0 1 2758000 + 48061 25637 30312 30326 55504 55504 0.10192626254251991 VIREGNHIRR 10 Unmodified _VIREGNHIRR_ 0 0 0 REV__L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|1|1|sense REV__L1MA9_dup623|chr1:174860781-174862241:-|2.881476563510371|0.0213043806224842|7.08|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 625.365444 1248.71634 0.55485 0.00034698 2.7839 0.001741 3.3388 0.0020879 625.3680270339462 98.738 0.11197 102.53 102.47 102.58 3.7926 -0.1813 0.0012389 NaN 1.4819 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 387450 + 48062 25637 30312 30326 0.10192626254251991 VIRENFYSI 9 Unmodified _VIRENFYSI_ 0 0 0 L1MC1_dup5699|chr6:166375414-166376085:-|2.01633353107336|0.4227623839002054|2.25|151.0|6|1|sense L1MC1_dup5699|chr6:166375414-166376085:-|2.01633353107336|0.4227623839002054|2.25|151.0|6|1|sense L1MC1_dup5699|chr6:166375414-166376085:-|2.01633353107336|0.4227623839002054|2.25|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.8051147460938 2 570.806031 1139.59751 0.44312 0.00025294 0.154 8.7904E-05 0.59712 0.00034084 570.8059332219455 74.827 0.17031 74.827 74.739 74.91 0 28 20 2 0 0 0 0.23293 3 17369 17369;17372;17376 18.146 1.9972 1 146190 48063 11169 30313 30327 55505;55506;55507 55505 0.0332941450603812 VIREYHKWR 9 Unmodified _VIREYHKWR_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MSMS UPN47_class_I_Rep_3 4 643.8583374023438 2 643.859464 1285.70437 NaN NaN NaN NaN NaN NaN NaN 57.344 1 60.512 60.012 61.012 3.1681 0 0 0 0.4007 1 13244 13244 0.52476 0 1 48064 4735 30314 30328 55508 55508 0.07295009511062744 VIRGLLHRLR 10 Unmodified _VIRGLLHRLR_ 0 0 0 REV__ENST00000527348.1_1_11:65770323-65770707:+|nuORF REV__ENST00000527348.1_1_11:65770323-65770707:+|nuORF MSMS UPN48_class_I_Rep_2 6 616.904541015625 2 616.906748 1231.79894 NaN NaN NaN NaN NaN NaN NaN 71.762 1 75.312 74.812 75.812 3.5505 0 0 0 0.53105 1 16765 16765 0.40072 0 1 + 48065 22817 30315 30329 55509 55509 0.19231568053055526 VIRGLTIEL 9 Unmodified _VIRGLTIEL_ 0 0 0 REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|48|1|anti-sense REV__L1MC5a_dup14056|chr15:82820927-82821954:-|1.397612854702026|0.4233861776348046|1.72|151.0|48|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.3214111328125 2 507.321317 1012.62808 0.35753 0.00018138 -0.14658 -7.4363E-05 0.21095 0.00010702 507.3211719872673 59.261 0.45743 62.741 62.513 62.97 3.4801 46 26 2 0 0 0 0.17897 1 13051 13051 22.736 1.1993 1 161830 + 48066 27125 30316 30330 55510 55510 0.1222719289107772 VIRKHKINM 9 Unmodified _VIRKHKINM_ 0 0 0 L1ME1_dup18936|chr10:839438-840260:+|1.8200798743098865|0.014909945781729|6.93|150.0|1|1|sense L1ME1_dup18936|chr10:839438-840260:+|1.8200798743098865|0.014909945781729|6.93|150.0|1|1|sense L1ME1_dup18936|chr10:839438-840260:+|1.8200798743098865|0.014909945781729|6.93|150.0|1|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 570.3302001953125 2 569.84751 1137.68047 0.4072 0.00023204 -1.2379 -0.0007054 -0.83068 -0.00047336 569.8467756629054 49.397 0.087715 52.743 52.688 52.775 3.3465 6 4 2 0 0 0 0.12462 1 10772 10772 1.8442 1.1539 1 23038 48067 12271 30317 30331 55511 55511 0.11713452753065212 VIRLYGPY 8 Unmodified _VIRLYGPY_ 0 0 0 REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF MSMS UPN47_class_I_Rep_2 3 490.7807312011719 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 117.37 1 120.86 120.36 121.36 3.4891 0 0 0 0.40738 1 28684 28684 0.79363 0 1 + 48068 19048 30318 30332 55512 55512 0.05850965656804874 VIRLYGPY 8 Unmodified _VIRLYGPY_ 0 0 0 REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF MSMS UPN47_class_I_Rep_3 4 490.7601318359375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 114.71 1 118.19 117.69 118.69 3.4802 0 0 0 0.40738 1 28182 28182 0.79363 0 1 + 48069 19048 30318 30332 55513 55513 0.05850965656804874 VIRMIFHCFI 10 Unmodified _VIRMIFHCFI_ 0 0 0 REV__MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|45|3|anti-sense REV__MLT1A0-int_dup817|chr15:30857353-30857953:-|2.139806623928614|0.0017832051003729|10.23|149.0|45|3|anti-sense MSMS UPN47_class_I_Rep_1 2 639.845458984375 2 639.846122 1277.67769 NaN NaN NaN NaN NaN NaN NaN 96.366 1 100.14 99.642 100.64 3.7767 0 0 0 0.53105 1 23892 23892 1.6526 0 1 + 48070 31608 30319 30333 55514 55514 0.04995861303859783 VIRRIGKA 8 Unmodified _VIRRIGKA_ 0 0 0 REV__ENST00000569825.1_1_16:70287541-70292096:-|nuORF REV__ENST00000569825.1_1_16:70287541-70292096:-|nuORF MSMS UPN47_class_I_Rep_2 3 456.7980041503906 2 456.808711 911.602869 NaN NaN NaN NaN NaN NaN NaN 22.963 1 26.408 25.908 26.908 3.4447 0 0 0 0.40746 1 2814 2814 0.69038 0 1 + 48071 18012 30320 30334 55515 55515 0.1435318287916516 VIRRQKRK 8 Unmodified _VIRRQKRK_ 0 0 0 L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 542.3640747070312 2 542.364716 1082.71488 NaN NaN NaN NaN NaN NaN NaN 36.168 1 36.168 35.668 36.668 0 0 0 0 0.40746 1 6673 6673 0.69038 0 1 48072 11473 30321 30335 55516 55516 0.17683036956168507 VIRRQKRK 8 Unmodified _VIRRQKRK_ 0 0 0 L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 542.365966796875 2 542.364716 1082.71488 NaN NaN NaN NaN NaN NaN NaN 37.417 1 37.417 36.917 37.917 0 0 0 0 0.40746 1 7034 7034 0.69038 0 1 48073 11473 30321 30335 55517 55517 0.17683036956168507 VIRRQKRK 8 Unmodified _VIRRQKRK_ 0 0 0 L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 542.3667602539062 2 542.364716 1082.71488 NaN NaN NaN NaN NaN NaN NaN 39.027 1 39.027 38.527 39.527 0 0 0 0 0.40746 1 7474 7474 0.69038 0 1 48074 11473 30321 30335 55518 55518 0.17683036956168507 VIRRQKRK 8 Unmodified _VIRRQKRK_ 0 0 0 L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 542.366455078125 2 542.364716 1082.71488 NaN NaN NaN NaN NaN NaN NaN 39.618 1 39.618 39.118 40.118 0 0 0 0 0.40746 1 7626 7626 0.69038 0 1 48075 11473 30321 30335 55519 55519 0.17683036956168507 VIRRQKRK 8 Unmodified _VIRRQKRK_ 0 0 0 L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense L1MC4_dup24153|chr20:58685192-58686173:+|1.4192594954628568|0.2233355661840774|2.67|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 542.3663940429688 2 542.364716 1082.71488 NaN NaN NaN NaN NaN NaN NaN 40.536 1 40.536 40.036 41.036 0 0 0 0 0.40746 1 7872 7872 0.69038 0 1 48076 11473 30321 30335 55520 55520 0.17683036956168507 VIRSSFAAL 9 Unmodified _VIRSSFAAL_ 0 0 0 L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|19|1|anti-sense L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|19|1|anti-sense L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|19|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.28472900390625 2 482.284734 962.554916 -0.06001 -2.8942E-05 0.19663 9.4834E-05 0.13662 6.5891E-05 482.2847556229136 48.348 1.4805 52.03 51.542 53.023 3.6819 237 92 4 0 0 0 0.043452 1 10436 10436 51.63 3.8811 1 2476600 48077 11241 30322 30336 55521 55521 0.07214064168454115 VIRSSFAAL 9 Unmodified _VIRSSFAAL_ 0 0 0 L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|19|1|anti-sense L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|19|1|anti-sense L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|19|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.28466796875 2 482.284734 962.554916 0.13641 6.579E-05 -0.14612 -7.0471E-05 -0.0097063 -4.6812E-06 482.2846008515194 48.703 1.9219 52.049 51.562 53.484 3.3465 280 113 4 0 0 0 0.043452 2 10543 10543;10587 51.63 0 1 2385100 48078 11241 30322 30336 55522;55523 55522 0.07214064168454115 VIRYFLFIWKT 11 Unmodified _VIRYFLFIWKT_ 0 0 0 REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29302978515625 3 495.958741 1484.85439 0.30674 0.00015213 0.64789 0.00032133 0.95463 0.00047346 495.9587658054295 99.895 0.2324 99.895 99.766 99.999 0 50 25 3 0 0 0 0.68024 1 24343 24343 0.50596 0.41111 1 1264200 + 48079 32202 30323 30337 55524 55524 0.1313593673014566 VIRYFLFIWKT 11 Unmodified _VIRYFLFIWKT_ 0 0 0 REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 495.9588928222656 3 495.958741 1484.85439 0.17354 8.6071E-05 0.65024 0.00032249 0.82379 0.00040856 495.9590503408212 96.619 0.33767 100.23 100.08 100.42 3.6124 48 35 2 0 0 0 0.68132 1 23294 23294 0.40827 0.31342 1 309410 + 48080 32202 30323 30337 55525 55525 0.1313593673014566 VIRYFLFIWKT 11 Unmodified _VIRYFLFIWKT_ 0 0 0 REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 496.3538513183594 3 495.958741 1484.85439 0.17358 8.6087E-05 0.13467 6.6788E-05 0.30824 0.00015288 495.95866080426146 94.54 0.12026 98.161 98.125 98.245 3.6208 29 15 2 0 0 0 22.551 1 22755 22755 0.073264 0 1 154410 + 48081 32202 30323 30337 55526 55526 0.1313593673014566 VIRYFLFIWKT 11 Unmodified _VIRYFLFIWKT_ 0 0 0 REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 495.958741 1484.85439 0.27934 0.00013854 0.32443 0.00016091 0.60377 0.00029945 495.9588194551589 96.472 0.21167 100.25 100.1 100.31 3.7767 0.012457 -0.00032357 NaN 0.40827 52 27 3 NaN NaN NaN NaN 0 NaN NaN 0 116930 + 48082 32202 30323 30337 0.1313593673014566 VIRYFLFIWKT 11 Unmodified _VIRYFLFIWKT_ 0 0 0 REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense REV__THE1A-int_dup1009|chr10:117303001-117304557:+|1.0893688792389864|0.0191088090511869|5.83|151.0|71|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958741 1484.85439 0.44598 0.00022119 0.22459 0.00011139 0.67058 0.00033258 495.9587466229623 96.084 0.17088 99.563 99.475 99.646 3.4791 -0.173 -0.0006169 NaN 0.50596 67 25 3 NaN NaN NaN NaN 0 NaN NaN 0 206190 + 48083 32202 30323 30337 0.1313593673014566 VISFDPLVK 9 Unmodified _VISFDPLVK_ 0 0 0 REV__L1MC4_dup4054|chr3:5164417-5165209:-|1.6006793775795178|0.0585347569170531|4.77|151.0|58|3|anti-sense REV__L1MC4_dup4054|chr3:5164417-5165209:-|1.6006793775795178|0.0585347569170531|4.77|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_2 3 509.2759704589844 2 509.302593 1016.59063 NaN NaN NaN NaN NaN NaN NaN 65.924 1 69.182 68.682 69.682 3.2588 0 0 0 0.39598 1 15805 15805 1.6526 0 1 + 48084 26911 30324 30338 55527 55527 0.08300101625468415 VISFDPLVK 9 Unmodified _VISFDPLVK_ 0 0 0 REV__L1MC4_dup4054|chr3:5164417-5165209:-|1.6006793775795178|0.0585347569170531|4.77|151.0|58|3|anti-sense REV__L1MC4_dup4054|chr3:5164417-5165209:-|1.6006793775795178|0.0585347569170531|4.77|151.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 508.82763671875 2 509.302593 1016.59063 0.25258 0.00012864 0.71098 0.0003621 0.96356 0.00049074 509.30317448655813 65.658 0.23431 68.837 68.702 68.936 3.1795 15 13 2 0 0 0 0.12477 1 15804 15804 1.6526 0 1 57798 + 48085 26911 30324 30338 55528 55528 0.08300101625468415 VISFIDGTWT 10 Unmodified _VISFIDGTWT_ 0 0 0 REV__THE1A-int_dup1307|chr17:2622173-2623257:-|1.5951453222964191|0.0134543205762982|6.89|151.0|45|1|anti-sense REV__THE1A-int_dup1307|chr17:2622173-2623257:-|1.5951453222964191|0.0134543205762982|6.89|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.791015625 2 569.792589 1137.57063 NaN NaN NaN NaN NaN NaN NaN 33.059 1 36.749 36.249 37.249 3.6896 0 0 0 0.53105 1 5092 5092 1.4819 0.28856 1 + 48086 32207 30325 30339 55529 55529 0.0073430589486633835 VISIYPFMVMI 11 Unmodified _VISIYPFMVMI_ 0 0 0 L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.2398681640625 3 438.239639 1311.69709 0.0051945 2.2764E-06 0.28662 0.00012561 0.29181 0.00012788 438.2397089942336 65.751 1.0145 69.108 68.642 69.656 3.3576 139 61 3 0 0 0 0.49243 1 15642 15642 7.9454 1.3219 1 300760 48087 11578 30326 30340 55530 55530 0.053707728041217706 VISIYPFMVMI 11 Unmodified _VISIYPFMVMI_ 0 0 0 L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 438.23974609375 3 438.239639 1311.69709 -0.39743 -0.00017417 0.39375 0.00017256 -0.0036766 -1.6112E-06 438.2398190300745 65.857 0.34404 69.116 68.834 69.178 3.2588 32 18 2 0 0 0 0.60697 1 15771 15771 5.0475 0.93089 1 304960 48088 11578 30326 30340 55531 55531 0.053707728041217706 VISIYPFMVMI 11 Unmodified _VISIYPFMVMI_ 0 0 0 L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.2396240234375 3 438.239639 1311.69709 0.047867 2.0977E-05 0.2346 0.00010281 0.28247 0.00012379 438.2397176418129 66.069 0.89479 69.521 69.115 70.01 3.4516 144 58 3 0 0 0 0.59293 2 15155 15033;15155 5.4027 5.0475 1 639990 48089 11578 30326 30340 55532;55533 55533 0.053707728041217706 VISIYPFMVMI 11 Unmodified _VISIYPFMVMI_ 0 0 0 L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense L1MC4a_dup4535|chr7:130044316-130045240:+|1.6399796659784365|0.1123654773960693|3.87|151.0|53|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 438.2398986816406 3 438.239639 1311.69709 0.18245 7.9956E-05 0.087139 3.8188E-05 0.26959 0.00011814 438.2396288972705 65.748 1.0364 69.256 68.901 69.937 3.5077 176 72 3 0 0 0 0.59293 1 14812 14812 5.4027 0 1 497890 48090 11578 30326 30340 55534 55534 0.053707728041217706 VISKIKNKM 9 Unmodified _VISKIKNKM_ 0 0 0 L1ME3A_dup5943|chr6:72774390-72775155:+|1.5743311847544368|0.0036439513165444|8.76|145.0|6|1|sense L1ME3A_dup5943|chr6:72774390-72775155:+|1.5743311847544368|0.0036439513165444|8.76|145.0|6|1|sense L1ME3A_dup5943|chr6:72774390-72775155:+|1.5743311847544368|0.0036439513165444|8.76|145.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 530.8334350585938 2 530.830995 1059.64744 NaN NaN NaN NaN NaN NaN NaN 66.355 1 69.863 69.363 70.363 3.5077 0 0 0 0.39598 1 15064 15064 1.6526 0 1 48091 12676 30327 30341 55535 55535 0.11999825910356776 VISLGVVKP 9 Unmodified _VISLGVVKP_ 0 0 0 ENST00000402742.1_1_6:85996357-85996766:+|nuORF;ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3 ENST00000402742.1_1_6:85996357-85996766:+|nuORF ENST00000402742.1_1_6:85996357-85996766:+|nuORF MSMS UPN48_class_I_Rep_2 6 456.30126953125 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 46.386 1 50.135 49.635 50.635 3.7494 0 0 0 0.38639 1 9058 9058 1.8442 1.2427 1 48092 1622 30328 30342 55536 55536 0.1262842283365444 VISLKIYSY 9 Unmodified _VISLKIYSY_ 0 0 0 ENST00000400968.6_1_1:193053891-193053975:+|nuORF ENST00000400968.6_1_1:193053891-193053975:+|nuORF ENST00000400968.6_1_1:193053891-193053975:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 543.3140869140625 2 543.3157 1084.61685 0.45683 0.0002482 -0.17986 -9.7723E-05 0.27697 0.00015048 543.3154513586776 69.272 0.79713 72.727 72.256 73.053 3.4548 130 60 3 0 0 0 0.44742 1 15921 15921 5.2969 0 1 437110 48093 6597 30329 30343 55537 55537 0.07792370796937576 VISPTFIPSF 10 Unmodified _VISPTFIPSF_ 0 0 0 REV__L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|128|3|anti-sense REV__L1MEg_dup4055|chr4:129006798-129008669:-|1.864484835212593|0.0898134076089771|4.38|151.0|128|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.305908203125 2 554.307875 1106.6012 NaN NaN NaN NaN NaN NaN NaN 66.216 1 69.703 69.203 70.203 3.4866 0 0 0 0.53105 1 15111 15111 9.3831 1.473 1 + 48094 28750 30330 30344 55538 55538 0.0521608427989122 VISRRRSK 8 Unmodified _VISRRRSK_ 0 0 0 nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4 nc|ENSG00000116106|P54764-2|EPHA4 nc|ENSG00000116106|P54764-2|EPHA4 MULTI-SECPEP UPN47_class_I_Rep_3 4 500.78955078125 2 501.319974 1000.6254 0.28024 0.00014049 -0.6285 -0.00031508 -0.34826 -0.00017459 501.31949834319386 87.47 0.15417 90.858 90.746 90.9 3.3873 22 18 2 0 0 0 0.72333 1 21909 21909 7.9102 0.62092 1 95456 48095 2160 30331 30345 55539 55539 0.12510782276797272 VISTSKFHY 9 Unmodified _VISTSKFHY_ 0 0 0 Tigger1_dup8687|chr11:74996153-74997564:-|3.002289149658876|0.344720156989216|3.12|151.0|37|3|sense Tigger1_dup8687|chr11:74996153-74997564:-|3.002289149658876|0.344720156989216|3.12|151.0|37|3|sense Tigger1_dup8687|chr11:74996153-74997564:-|3.002289149658876|0.344720156989216|3.12|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.2862548828125 2 541.287474 1080.5604 0.51666 0.00027966 -0.49818 -0.00026966 0.018471 9.9983E-06 541.2870239884866 52.471 0.47934 56.11 55.835 56.315 3.639 50 39 2 0 0 0 0.43153 1 10949 10949 6.2058 0 1 148530 48096 33202 30332 30346 55540 55540 0.023337429602634074 VISWDLPY 8 Unmodified _VISWDLPY_ 0 0 0 REV__ENSG00000119707|ENST00000261973|RBM25 REV__ENSG00000119707|ENST00000261973|RBM25 MSMS UPN48_class_I_Rep_1 5 496.7563171386719 2 496.758018 991.501483 NaN NaN NaN NaN NaN NaN NaN 36.422 1 39.929 39.429 40.429 3.507 0 0 0 0.40364 1 6076 6076 5.7604 0 1 + 48097 18683 30333 30347 55541 55541 0.005392666659304268 VISWDLPY 8 Unmodified _VISWDLPY_ 0 0 0 REV__ENSG00000119707|ENST00000261973|RBM25 REV__ENSG00000119707|ENST00000261973|RBM25 MSMS UPN48_class_I_Rep_1 5 496.7558898925781 2 496.758018 991.501483 NaN NaN NaN NaN NaN NaN NaN 36.574 1 40.081 39.581 40.581 3.507 0 0 0 0.40364 1 6121 6121 5.7604 0 1 + 48098 18683 30333 30347 55542 55542 0.005392666659304268 VITDDTFLSL 10 Unmodified _VITDDTFLSL_ 0 0 0 REV__L1PA6_dup42|chr1:41133322-41134597:+|1.7211086428647933|0.0263191832199487|6.03|150.0|8|1|sense REV__L1PA6_dup42|chr1:41133322-41134597:+|1.7211086428647933|0.0263191832199487|6.03|150.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 562.4991455078125 2 562.297704 1122.58086 NaN NaN NaN NaN NaN NaN NaN 40.788 1 44.439 43.939 44.939 3.6509 0 0 0 0.53105 1 7295 7295 1.4819 0 1 + 48099 29901 30334 30348 55543 55543 0.024468688294291496 VITETVVEV 9 Unmodified _VITETVVEV_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENSG00000109381.20,ELF2,chr4,-,I10.1,139067771,139071865|51|10.86|1|intron;ENST00000514606.1_1_4:139988805-140005344:-|nuORF nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-MSMS UPN46_class_I_Rep_3 1 494.78173828125 2 494.78169 987.548827 0.23823 0.00011787 0.015008 7.4257E-06 0.25324 0.0001253 494.7815742989027 63.245 0.2286 63.245 63.104 63.333 0 38 23 2 0 0 0 0.074367 1 14190 14190 39.957 5.8549 1 203960 48100 1894 30335 30349 55544 55544 0.054555011462980474 VITETVVEV 9 Unmodified _VITETVVEV_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENSG00000109381.20,ELF2,chr4,-,I10.1,139067771,139071865|51|10.86|1|intron;ENST00000514606.1_1_4:139988805-140005344:-|nuORF nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-SECPEP UPN47_class_I_Rep_1 2 495.3233947753906 2 494.78169 987.548827 0.1733 8.5748E-05 0.044773 2.2153E-05 0.21808 0.0001079 494.781696814302 58.68 0.51244 62.098 61.881 62.394 3.4171 52 32 2 0 0 0 0.11021 1 13547 13547 14.838 0 1 69875 48101 1894 30335 30349 55545 55545 0.054555011462980474 VITETVVEV 9 Unmodified _VITETVVEV_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENSG00000109381.20,ELF2,chr4,-,I10.1,139067771,139071865|51|10.86|1|intron;ENST00000514606.1_1_4:139988805-140005344:-|nuORF nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-MSMS UPN47_class_I_Rep_3 4 494.7813415527344 2 494.78169 987.548827 0.11796 5.8363E-05 0.40728 0.00020151 0.52524 0.00025988 494.7815276449987 58.957 0.4768 62.123 61.893 62.37 3.1658 56 27 3 0 0 0 0.09884 1 13770 13770 34.102 1.797 1 96003 48102 1894 30335 30349 55546 55546 0.054555011462980474 VITGHYLRY 9 Unmodified _VITGHYLRY_ 0 0 0 REV__ENST00000484528.1_1_2:234465455-234475343:-|nuORF REV__ENST00000484528.1_1_2:234465455-234475343:-|nuORF MSMS UPN48_class_I_Rep_2 6 561.3064575195312 2 561.308741 1120.60293 NaN NaN NaN NaN NaN NaN NaN 29.412 1 33.044 32.544 33.544 3.6316 0 0 0 0.38639 1 4174 4174 3.9444 0 1 + 48103 17962 30336 30350 55547 55547 0.0474513808849224 VITLGTSKKF 10 Unmodified _VITLGTSKKF_ 0 0 0 REV__L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|141|1|anti-sense REV__L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|141|1|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3326416015625 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 69.278 1 72.733 72.233 73.233 3.4548 0 0 0 0.53105 1 16060 16060 1.4819 0 1 + 48104 27495 30337 30351 55548 55548 0.11167462062553568 VITTRCNG 8 Unmodified _VITTRCNG_ 0 0 0 REV__nc|ENSG00000168280|O60282-2|KIF5C REV__nc|ENSG00000168280|O60282-2|KIF5C MSMS UPN46_class_I_Rep_3 1 432.30035400390625 2 432.22382 862.433086 NaN NaN NaN NaN NaN NaN NaN 31.966 1 31.966 31.466 32.466 0 0 0 0 0.40746 1 5409 5409 0.69038 0 1 + 48105 20268 30338 30352 55549 55549 -0.003633011855527002 VITTRRPT 8 Unmodified _VITTRRPT_ 0 0 0 ENST00000585403.5_1_17:40719643-40721531:+|nuORF ENST00000585403.5_1_17:40719643-40721531:+|nuORF ENST00000585403.5_1_17:40719643-40721531:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 472.7890625 2 472.287808 942.561064 0.24556 0.00011597 -0.61866 -0.00029219 -0.37311 -0.00017621 472.2875259391662 90.698 0.35259 90.698 90.644 90.996 0 54 37 2 0 0 0 0.82752 1 21875 21875 4.756 0 1 826120 48106 7577 30339 30353 55550 55550 0.08748582399982752 VIVGHLDWFQV 11 Unmodified _VIVGHLDWFQV_ 0 0 0 L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 438.2398986816406 3 438.239796 1311.69756 -0.37624 -0.00016488 0.25024 0.00010967 -0.126 -5.5217E-05 438.23982553956694 66.009 1.1248 69.194 68.728 69.853 3.1853 179 75 4 0 0 0 0.51094 1 15835 15835 7.4771 0 1 398640 48107 14297 30340 30354 55551 55551 0.05417651839820792 VIVGHLDWFQV 11 Unmodified _VIVGHLDWFQV_ 0 0 0 L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 438.23956298828125 3 438.239796 1311.69756 0.047867 2.0977E-05 -0.12213 -5.3524E-05 -0.074267 -3.2547E-05 438.2397176418129 66.069 0.89479 69.521 69.115 70.01 3.4516 144 58 3 0 0 0 0.59293 1 15073 15073 5.4027 0 1 639990 48108 14297 30340 30354 55552 55552 0.05417651839820792 VIVGHLDWFQV 11 Unmodified _VIVGHLDWFQV_ 0 0 0 L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense L1PA3_dup9773|chr16:20755653-20759030:-|1.0215822009733126|0.1693897301824176|2.59|150.0|139|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 438.23980712890625 3 438.239796 1311.69756 0.13886 6.0856E-05 -0.17223 -7.548E-05 -0.033369 -1.4624E-05 438.23966791554375 65.981 0.89406 69.468 69.017 69.911 3.4866 163 63 3 0 0 0 0.59293 1 14999 14999 5.4027 0 1 763110 48109 14297 30340 30354 55553 55553 0.05417651839820792 VIVIGFFAV 9 Unmodified _VIVIGFFAV_ 0 0 0 nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B nc|ENSG00000144369|Q6P995-2|FAM171B nc|ENSG00000144369|Q6P995-2|FAM171B MSMS UPN47_class_I_Rep_2 3 482.7954406738281 2 482.796946 963.57934 NaN NaN NaN NaN NaN NaN NaN 118.91 1 122.39 121.89 122.89 3.4793 0 0 0 0.40038 1 29110 29110 0.6015 0 1 48110 3350 30341 30355 55554 55554 0.09609324321991153 VIVKKKKKKKK 11 Unmodified _VIVKKKKKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_1 2 452.26690673828125 3 452.337663 1353.99116 NaN NaN NaN NaN NaN NaN NaN 92.284 1 96.005 95.505 96.505 3.7209 0 0 0 0.38417 1 23002 23002 0 0 1 48111 6532 30342 30356 55555 55555 0.3283247068052333 VIVPRTHISPV 11 Unmodified _VIVPRTHISPV_ 0 0 0 REV__L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|2|1|sense REV__L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 406.5841979980469 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 105.08 1 108.61 108.11 109.11 3.5308 0 0 0 0.38417 1 25742 25742 1.2148 0.4383 1 + 48112 27709 30343 30357 55556 55556 0.12949644593800258 VIVPRTHISPV 11 Unmodified _VIVPRTHISPV_ 0 0 0 REV__L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|2|1|sense REV__L1ME1_dup25823|chr15:56957258-56958124:-|1.25708613059855|0.0137110487704436|6.52|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 406.5840148925781 3 406.583674 1216.72919 NaN NaN NaN NaN NaN NaN NaN 104.53 1 108.25 107.75 108.75 3.7192 0 0 0 0.38417 1 24678 24678 0.40827 0.17242 1 + 48113 27709 30343 30357 55557 55557 0.12949644593800258 VIVRTLRN 8 Unmodified _VIVRTLRN_ 0 0 0 REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|47|1|sense REV__HERVL-int_dup1889|chr12:75372313-75377281:-|1.341526690395866|0.3838758693984928|1.81|149.0|47|1|sense MSMS UPN47_class_I_Rep_1 2 485.8116455078125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.04 1 71.405 70.905 71.905 3.3646 0 0 0 0.40738 1 16400 16400 0.79363 0 1 + 48114 23874 30344 30358 55558 55558 0.12232861670997863 VIVSGFEHLL 10 Unmodified _VIVSGFEHLL_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|182|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|182|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|182|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.31884765625 2 557.318774 1112.623 0.43357 0.00024164 -0.24505 -0.00013657 0.18853 0.00010507 557.3185221221878 65.687 0.44843 68.866 68.672 69.12 3.1795 40 26 3 0 0 0 0.54466 1 15776 15776 6.2058 0 1 134190 48115 11566 30345 30359 55559 55559 0.07118889028470221 VIVSGFEHLL 10 Unmodified _VIVSGFEHLL_ 0 0 0 L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|182|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|182|2|anti-sense L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|182|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 557.318774 1112.623 0.37036 0.00020641 0.26719 0.00014891 0.63756 0.00035532 557.3186096335041 65.557 0.15887 68.813 68.728 68.887 3.2556 -0.026575 0.0004091 NaN 6.2058 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 110950 48116 11566 30345 30359 0.07118889028470221 VIVTPCML 8 Unmodified _VIVTPCML_ 0 0 0 L1MA2_dup6754|chr16:29149270-29149638:-|1.342099235315953|0.0160771496411404|6.38|151.0|16|3|sense;L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|84|1|sense L1MA2_dup6754|chr16:29149270-29149638:-|1.342099235315953|0.0160771496411404|6.38|151.0|16|3|sense L1MA2_dup6754|chr16:29149270-29149638:-|1.342099235315953|0.0160771496411404|6.38|151.0|16|3|sense MSMS UPN46_class_I_Rep_3 1 438.2396240234375 2 438.240092 874.465632 NaN NaN NaN NaN NaN NaN NaN 71.538 1 71.538 71.038 72.038 0 0 0 0 0.4032 1 16485 16485 6.3541 0 1 48117 9446 30346 30360 55560 55560 0.023377698930744373 VIWALLLFY 9 Unmodified _VIWALLLFY_ 0 0 0 L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|111|1|anti-sense L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|111|1|anti-sense L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|111|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.244873046875 2 569.338978 1136.6634 NaN NaN NaN NaN NaN NaN NaN 50.336 1 53.957 53.457 54.457 3.621 0 0 0 0.39326 1 10201 10201 2.3027 0 1 48118 15343 30347 30361 55561 55561 0.10053855418891544 VIWIDVLHH 9 Unmodified _VIWIDVLHH_ 0 0 0 REV__L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|29|2|anti-sense REV__L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|29|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.319091796875 2 566.319109 1130.62366 0.57966 0.00032827 -0.23425 -0.00013266 0.34541 0.00019561 566.3188753287014 58.456 0.57074 61.955 61.774 62.345 3.4987 45 30 2 0 0 0 0.48846 1 12834 12834 1.8442 1.8442 1 104080 + 48119 26122 30348 30362 55562 55562 0.06357728468174173 VIYFKNEF 8 Unmodified _VIYFKNEF_ 0 0 0 MSTC_dup791|chr4:15789532-15789971:+|1.2045517333220612|0.0500089615161821|4.59|151.0|27|2|anti-sense MSTC_dup791|chr4:15789532-15789971:+|1.2045517333220612|0.0500089615161821|4.59|151.0|27|2|anti-sense MSTC_dup791|chr4:15789532-15789971:+|1.2045517333220612|0.0500089615161821|4.59|151.0|27|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 530.2794189453125 2 530.279118 1058.54368 0.51359 0.00027234 -0.096802 -5.1332E-05 0.41679 0.00022101 530.2789574256789 87.262 0.41426 91.052 90.725 91.139 3.7905 140 54 3 0 0 0 0.82752 1 20636 20636 6.7232 0.51738 1 871540 48120 16592 30349 30363 55563 55563 0.01675242074338712 VIYFLGYINH 10 Unmodified _VIYFLGYINH_ 0 0 0 L1ME4a_dup24774|chr12:65339791-65340596:+|1.3910243128067736|0.010178122714546|7.09|149.0|47|2|anti-sense L1ME4a_dup24774|chr12:65339791-65340596:+|1.3910243128067736|0.010178122714546|7.09|149.0|47|2|anti-sense L1ME4a_dup24774|chr12:65339791-65340596:+|1.3910243128067736|0.010178122714546|7.09|149.0|47|2|anti-sense MSMS UPN47_class_I_Rep_2 3 620.3152465820312 2 619.832049 1237.64954 NaN NaN NaN NaN NaN NaN NaN 53.058 1 56.385 55.885 56.885 3.3266 0 0 0 0.53105 1 11883 11883 1.4819 0 1 48121 12861 30350 30364 55564 55564 0.040225779198181044 VIYHLTPVI 9 Unmodified _VIYHLTPVI_ 0 0 0 L1PA16_dup9871|chr11:14604568-14605386:-|1.83621095379192|0.1388112857828223|3.73|150.0|8|2|sense L1PA16_dup9871|chr11:14604568-14605386:-|1.83621095379192|0.1388112857828223|3.73|150.0|8|2|sense L1PA16_dup9871|chr11:14604568-14605386:-|1.83621095379192|0.1388112857828223|3.73|150.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 527.8177490234375 2 527.81841 1053.62227 NaN NaN NaN NaN NaN NaN NaN 35.101 1 38.774 38.274 39.274 3.6735 0 0 0 0.40038 1 5742 5742 0.6015 0 1 48122 14143 30351 30365 55565 55565 0.09760094379407747 VIYKEERF 8 Unmodified _VIYKEERF_ 0 0 0 MSTA_dup17980|chr18:36790927-36791314:+|1.550779011832297|0.3075606506956597|2.33|151.0|21|3|anti-sense;MSTB_dup977|chr2:127382879-127383274:-|1.183093367321566|0.0107209775800687|6.79|151.0|24|3|anti-sense MSTA_dup17980|chr18:36790927-36791314:+|1.550779011832297|0.3075606506956597|2.33|151.0|21|3|anti-sense MSTA_dup17980|chr18:36790927-36791314:+|1.550779011832297|0.3075606506956597|2.33|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.2948608398438 2 542.295299 1082.57605 0.39727 0.00021544 0.34269 0.00018584 0.73996 0.00040128 542.2952413303337 62.592 0.92174 65.848 65.493 66.415 3.2558 113 59 3 0 0 0 0.82752 1 14752 14752 28.487 0 1 246870 48123 16528 30352 30366 55566 55566 0.038060294773458736 VIYKKQIY 8 Unmodified _VIYKKQIY_ 0 0 0 MLT1A1_dup971|chr2:201123295-201123675:-|1.6648720564097634|0.177406758316871|3.23|151.0|24|3|anti-sense MLT1A1_dup971|chr2:201123295-201123675:-|1.6648720564097634|0.177406758316871|3.23|151.0|24|3|anti-sense MLT1A1_dup971|chr2:201123295-201123675:-|1.6648720564097634|0.177406758316871|3.23|151.0|24|3|anti-sense MSMS UPN46_class_I_Rep_3 1 527.8164672851562 2 527.81841 1053.62227 NaN NaN NaN NaN NaN NaN NaN 97.139 1 97.139 96.639 97.639 0 0 0 0 0.40604 1 23629 23629 2.5775 0 1 48124 16267 30353 30367 55567 55567 0.09760094379430484 VIYPARISL 9 Unmodified _VIYPARISL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS UPN48_class_I_Rep_1 5 516.317626953125 2 516.316035 1030.61752 0.36623 0.00018909 0.94522 0.00048803 1.3114 0.00067712 516.3165225723468 57.887 0.74473 61.382 61.189 61.934 3.4942 107 46 3 0 0 0 0.23293 1 12548 12548 18.146 1.0335 1 413580 48125 2729 30354 30368 55568 55568 0.10343210236646883 VIYPARISL 9 Unmodified _VIYPARISL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 516.316035 1030.61752 0.36623 0.00018909 0.94522 0.00048803 1.3114 0.00067712 516.3165225723468 57.887 0.74473 61.382 61.189 61.934 3.4942 -0.1848 0.00011685 NaN 18.146 107 46 3 NaN NaN NaN NaN 0 NaN NaN 0 413580 48126 2729 30354 30368 0.10343210236646883 VIYPARISL 9 Unmodified _VIYPARISL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 516.316035 1030.61752 0.44356 0.00022902 0.74253 0.00038338 1.1861 0.0006124 516.3164237621264 57.979 0.72623 61.493 61.218 61.944 3.5142 -0.072963 -9.2458E-05 NaN 18.146 109 46 3 NaN NaN NaN NaN 0 NaN NaN 0 428370 48127 2729 30354 30368 0.10343210236646883 VIYPARISL 9 Unmodified _VIYPARISL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 516.316035 1030.61752 0.2917 0.00015061 -0.81983 -0.00042329 -0.52813 -0.00027268 516.8162473713279 58.292 0.064896 61.824 61.798 61.863 3.5317 0.25777 -0.0017058 NaN 18.146 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 48357 48128 2729 30354 30368 0.10343210236646883 VIYWDIWSL 9 Unmodified _VIYWDIWSL_ 0 0 0 LTR3_dup63|chr19:11853282-11853711:-|1.353396415975712|0.0612320539933744|4.47|151.0|3|1|sense;LTR3_dup64|chr19:11860562-11860984:-|3.1564289681041613|0.1950914690822537|4.02|149.0|6|2|sense LTR3_dup63|chr19:11853282-11853711:-|1.353396415975712|0.0612320539933744|4.47|151.0|3|1|sense LTR3_dup63|chr19:11853282-11853711:-|1.353396415975712|0.0612320539933744|4.47|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8126831054688 2 597.813325 1193.6121 0.46918 0.00028048 -1.4175 -0.00084741 -0.94833 -0.00056692 598.3140005361223 34.54 0.11576 38.213 38.178 38.294 3.6735 17 13 2 0 0 0 0.48643 1 5589 5589 2.0598 0.40713 1 106210 48129 15616 30355 30369 55569 55569 0.02303486654182052 VIYYDEADF 9 Unmodified _VIYYDEADF_ 0 0 0 REV__ENST00000439346.5_1_22:29095780-29107983:-|nuORF REV__ENST00000439346.5_1_22:29095780-29107983:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 567.75439453125 2 567.75313 1133.49171 0.36455 0.00020697 -1.4303 -0.00081207 -1.0658 -0.0006051 568.2530559410592 72.915 0.62424 76.294 76.03 76.654 3.3799 50 42 2 0 0 0 0.46434 1 17813 17813 4.3292 0 1 71522 + 48130 20797 30356 30370 55570 55570 -0.06969966130100147 VIYYEKDR 8 Unmodified _VIYYEKDR_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|137|3|sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|137|3|sense MSMS UPN48_class_I_Rep_1 5 543.2843017578125 2 543.284931 1084.55531 NaN NaN NaN NaN NaN NaN NaN 63.718 1 67.176 66.676 67.676 3.4578 0 0 0 0.4032 1 14367 14367 6.3541 0 1 + 48131 25727 30357 30371 55571 55571 0.0164143909764789 VKAEEIFE 8 Unmodified _VKAEEIFE_ 0 0 0 REV__ENSG00000010671|ENST00000308731|BTK REV__ENSG00000010671|ENST00000308731|BTK MULTI-SECPEP UPN47_class_I_Rep_2 3 482.3033752441406 2 482.752933 963.491313 0.15828 7.6411E-05 2.3275 0.0011236 2.4858 0.0012 482.7538290111177 69.139 0.040268 72.415 72.393 72.433 3.2761 5 3 2 0 0 0 0.72333 1 16766 16766 0.69038 0 1 25269 + 48132 17573 30358 30372 55572 55572 0.008106589407248066 VKAFSLTV 8 Unmodified _VKAFSLTV_ 0 0 0 Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|36|3|anti-sense Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|36|3|anti-sense Tigger13a_dup2617|chr15:68092944-68093509:-|1.193166496839302|0.027419882579456|5.44|151.0|36|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 432.88519287109375 2 432.763104 863.511654 -0.045664 -1.9762E-05 -0.051682 -2.2366E-05 -0.097346 -4.2128E-05 432.76302132991793 53.672 0.69822 57.2 56.838 57.536 3.5278 76 44 2 0 0 0 0.72333 1 12109 12109 6.7232 0 1 123240 48133 33227 30359 30373 55573 55573 0.07443874391174177 VKAHHFQKRHK 11 Unmodified _VKAHHFQKRHK_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS UPN48_class_I_Rep_1 5 472.6097106933594 3 472.609216 1414.80582 NaN NaN NaN NaN NaN NaN NaN 41.4 1 44.906 44.406 45.406 3.506 0 0 0 0.38417 1 7542 7542 0.50596 0 1 48134 4649 30360 30374 55574 55574 0.11500880933613189 VKAKCLAPI 9 Unmodified _VKAKCLAPI_ 0 0 0 REV__AluSz6_dup21808|chr8:100716130-100716414:+|1.1439996989374126|0.1036341388648459|3.46|151.0|4|2|sense REV__AluSz6_dup21808|chr8:100716130-100716414:+|1.1439996989374126|0.1036341388648459|3.46|151.0|4|2|sense MSMS UPN47_class_I_Rep_3 4 471.80560302734375 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 32.654 1 35.94 35.44 36.44 3.2867 0 0 0 0.39428 1 5726 5726 2.0598 0 1 + 48135 17226 30361 30375 55575 55575 0.10008482818807352 VKAKKAKP 8 Unmodified _VKAKKAKP_ 0 0 0 REV__ENSG00000106344|ENST00000223073|RBM28 REV__ENSG00000106344|ENST00000223073|RBM28 MULTI-MSMS UPN48_class_I_Rep_1 5 435.3005065917969 2 435.300188 868.585822 0.076852 3.3454E-05 0.3088 0.00013442 0.38565 0.00016787 435.30026182527735 63.374 0.20938 66.832 66.656 66.866 3.4578 27 16 3 0 0 0 0.82752 1 14271 14271 2.3027 0 1 443250 + 48136 18324 30362 30376 55576 55576 0.14627262273359065 VKAKKKKKKK 10 Unmodified _VKAKKKKKKK_ 0 0 0 ENSG00000189134|ENST00000343684|NKAPL;L1ME4a_dup28811|chr15:90019126-90019528:-|1.3220892467871113|0.0115155445825711|6.84|150.0|13|3|sense ENSG00000189134|ENST00000343684|NKAPL ENSG00000189134|ENST00000343684|NKAPL MSMS UPN47_class_I_Rep_2 3 405.2998962402344 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 25.43 1 28.913 28.413 29.413 3.483 0 0 0 0.53105 1 3529 3529 0.15932 0 1 48137 5272 30363 30377 55577 55577 0.2778736654954628 VKALNVPL 8 Unmodified _VKALNVPL_ 0 0 0 L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|3|1|sense L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|3|1|sense L1ME2_dup12244|chr20:35638299-35639339:+|1.2084132415237645|0.2481880688151432|2.28|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 427.2642822265625 2 427.278921 852.543289 -0.41228 -0.00017616 0.12757 5.4507E-05 -0.28471 -0.00012165 427.2788450355522 51.251 0.085682 54.467 54.422 54.507 3.2163 6 4 2 0 0 0 0.72333 1 11400 11400 5.2307 0 1 24462 48138 12467 30364 30378 55578 55578 0.11111867145143606 VKATFLGTK 9 Unmodified _VKATFLGTK_ 0 0 0 REV__HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|38|1|sense REV__HERVE_a-int_dup13|chr1:186914837-186922674:-|1.4270075771157726|0.0386936688913056|5.2|150.0|38|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7955322265625 2 482.794935 963.575317 -0.14084 -6.7998E-05 1.3989 0.00067539 1.2581 0.00060739 482.7956404685588 23.021 0.082275 23.021 22.995 23.077 0 7 4 2 0 0 0 0.48846 1 2830 2830 1.8442 1.0506 1 120510 + 48139 23633 30365 30379 55579 55579 0.09207234828272703 VKAVRLLY 8 Unmodified _VKAVRLLY_ 0 0 0 ENST00000504771.2_1_5:118690639-118690939:+|nuORF ENST00000504771.2_1_5:118690639-118690939:+|nuORF ENST00000504771.2_1_5:118690639-118690939:+|nuORF MSMS UPN48_class_I_Rep_2 6 481.2618103027344 2 481.313295 960.612037 NaN NaN NaN NaN NaN NaN NaN 108.58 1 112.26 111.76 112.76 3.6746 0 0 0 0.40604 1 25769 25769 2.5775 0 1 48140 7145 30366 30380 55580 55580 0.13015531444852968 VKCIIYVTI 9 Unmodified _VKCIIYVTI_ 0 0 0 REV__MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|41|3|sense REV__MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|41|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.3146362304688 2 526.314646 1050.61474 0.10305 5.4236E-05 0.087391 4.5995E-05 0.19044 0.00010023 526.3146981170149 72.241 0.27583 75.538 75.38 75.656 3.2971 35 23 2 0 0 0 0.42249 1 17713 17713 6.7232 0.51738 1 88674 + 48141 31501 30367 30381 55581 55581 0.09145618787488274 VKCIIYVTI 9 Unmodified _VKCIIYVTI_ 0 0 0 REV__MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|41|3|sense REV__MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|41|3|sense MSMS UPN48_class_I_Rep_1 5 526.3167724609375 2 526.314646 1050.61474 NaN NaN NaN NaN NaN NaN NaN 71.218 1 74.684 74.184 75.184 3.466 0 0 0 0.37476 1 16636 16636 6.7232 0.51738 1 + 48142 31501 30367 30381 55582 55582 0.09145618787488274 VKCKIKRM 8 Unmodified _VKCKIKRM_ 0 0 0 L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|8|1|sense L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|8|1|sense L1MC1_dup8509|chr10:26572119-26573222:-|2.205534900108568|0.0943683710894699|4.55|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 503.28350830078125 2 503.306632 1004.59871 NaN NaN NaN NaN NaN NaN NaN 101.86 1 105.65 105.15 106.15 3.7888 0 0 0 0.40746 1 25099 25099 0.69038 0 1 48143 11201 30368 30382 55583 55583 0.09659634069600997 VKCKLKMGR 9 Unmodified _VKCKLKMGR_ 0 0 0 REV__L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|10|2|sense REV__L1MA2_dup5416|chr11:17325103-17325985:-|1.1277323053775523|0.0531539369866931|4.41|151.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.817138671875 2 531.817364 1061.62018 0.3275 0.00017417 -0.78713 -0.00041861 -0.45964 -0.00024444 531.8168467544335 82.581 0.514 82.581 82.091 82.605 0 86 45 3 0 0 0 0.48846 1 19532 19532 1.8442 0 1 522570 + 48144 24887 30369 30383 55584 55584 0.09183019098304612 VKCQKPPL 8 Unmodified _VKCQKPPL_ 0 0 0 REV__L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|72|3|anti-sense REV__L1M4_dup16355|chr14:105284690-105285809:+|1.160180604486|0.0151558377112661|6.26|150.0|72|3|anti-sense MSMS UPN48_class_I_Rep_1 5 456.77197265625 2 456.770406 911.526258 NaN NaN NaN NaN NaN NaN NaN 80.627 1 84.189 83.689 84.689 3.5624 0 0 0 0.40625 1 19217 19217 2.3027 0.24298 1 + 48145 24386 30370 30384 55585 55585 0.06695623267671635 VKCRLISLP 9 Unmodified _VKCRLISLP_ 0 0 0 REV__ERV3-16A3_I-int_dup4348|chr11:3921096-3921555:+|1.134026752891835|0.007956532164671|7.16|150.0|14|3|sense REV__ERV3-16A3_I-int_dup4348|chr11:3921096-3921555:+|1.134026752891835|0.007956532164671|7.16|150.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 515.2704467773438 2 514.817887 1027.62122 NaN NaN NaN NaN NaN NaN NaN 114.36 1 118.01 117.51 118.51 3.6511 0 0 0 0.4007 1 27189 27189 0.52476 0 1 + 48146 23249 30371 30385 55586 55586 0.108515567388622 VKDKVKFT 8 Unmodified _VKDKVKFT_ 0 0 0 REV__ENSG00000143278|ENST00000367412|F13B REV__ENSG00000143278|ENST00000367412|F13B MSMS UPN46_class_I_Rep_3 1 482.7955017089844 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 29.075 1 29.075 28.575 29.575 0 0 0 0 0.40625 1 4556 4556 2.3027 0 1 + 48147 19433 30372 30386 55587 55587 0.09207234828284072 VKDLRPRART 10 Unmodified _VKDLRPRART_ 0 0 0 ENST00000484159.5_1_9:6434093-6493966:+|nuORF;nc|ENSG00000147854|Q96PU4-2|UHRF2;ENSG00000147854|ENST00000276893|UHRF2 ENST00000484159.5_1_9:6434093-6493966:+|nuORF ENST00000484159.5_1_9:6434093-6493966:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 606.1198120117188 2 606.370195 1210.72584 0.60606 0.00036749 -0.63959 -0.00038783 -0.033537 -2.0336E-05 606.3698278645093 89.025 0.072105 89.025 88.999 89.071 0 7 5 2 0 0 0 0.56333 1 21417 21417 1.4819 0 1 134870 48148 3487 30373 30387 55588 55588 0.12890394539772387 VKDQPKPAL 9 Unmodified _VKDQPKPAL_ 0 0 0 REV__L1MA3_dup7712|chr15:44706100-44708322:-|2.7506624075351733|0.0615266263122844|5.48|150.0|87|1|anti-sense REV__L1MA3_dup7712|chr15:44706100-44708322:-|2.7506624075351733|0.0615266263122844|5.48|150.0|87|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 498.7374267578125 2 498.297842 994.581131 0.33702 0.00016794 0.59067 0.00029433 0.92769 0.00046227 498.2976625145999 62.226 0.14545 65.7 65.672 65.817 3.4738 18 11 2 0 0 0 0.11425 1 13887 13887 12.532 0 1 40095 + 48149 25018 30374 30388 55589 55589 0.08362333339937322 VKDVILIVPNT 11 Unmodified _VKDVILIVPNT_ 0 0 0 REV__nc|ENSG00000138028|Q99674-3|CGREF1 REV__nc|ENSG00000138028|Q99674-3|CGREF1 MULTI-SECPEP UPN48_class_I_Rep_3 7 404.588623046875 3 404.251701 1209.73327 0.0085901 3.4725E-06 4.2538 0.0017196 4.2624 0.0017231 404.5884502166178 39.978 0.085274 43.629 43.564 43.649 3.6509 10 7 2 0 0 0 22.551 1 7053 7053 1.0136 0 1 50904 + 48150 19258 30375 30389 55590 55590 0.13679689296850484 VKEAFLFN 8 Unmodified _VKEAFLFN_ 0 0 0 REV__LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|1|1|sense REV__LTR2_dup35|chr1:149640859-149641307:+|1.4723716320860356|0.0757464762265609|4.28|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 484.76739501953125 2 484.26601 966.517468 0.23115 0.00011194 0.91043 0.00044089 1.1416 0.00055283 484.2667796259944 94.993 0.064934 98.894 98.873 98.938 3.9016 10 8 2 0 0 0 0.72333 1 22513 22513 2.5775 0 1 39086 + 48151 30876 30376 30390 55591 55591 0.03286972902856178 VKEARPRG 8 Unmodified _VKEARPRG_ 0 0 0 L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|22|1|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|22|1|sense L1ME2_dup8676|chr11:66154461-66156139:+|2.333513040204808|0.0241288096189914|6.6|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 456.7722473144531 2 456.772326 911.530098 0.21241 9.7024E-05 -0.13814 -6.3098E-05 0.074273 3.3926E-05 456.77216418211856 80.624 0.52743 84.287 84.14 84.667 3.6635 92 69 2 0 0 0 0.82752 1 19132 19132 2.5775 0.27475 1 445190 48152 12534 30377 30391 55592 55592 0.07079429085752054 VKEASLIFI 9 Unmodified _VKEASLIFI_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.3101806640625 2 510.310418 1018.60628 0.20805 0.00010617 -0.01544 -7.8793E-06 0.19261 9.8293E-05 510.31030976392174 69.713 0.3194 73.081 72.886 73.205 3.3678 46 29 2 0 0 0 0.23293 1 16914 16914 18.146 0 1 105250 + 48153 30788 30378 30392 55593 55593 0.09772388142516775 VKEASLIFI 9 Unmodified _VKEASLIFI_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.30987548828125 2 510.310418 1018.60628 NaN NaN NaN NaN NaN NaN NaN 69.993 1 73.364 72.864 73.864 3.3713 0 0 0 0.3377 1 16990 16990 8.7454 0 1 + 48154 30788 30378 30392 55594 55594 0.09772388142516775 VKEASLIFI 9 Unmodified _VKEASLIFI_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.31109619140625 2 510.310418 1018.60628 0.098478 5.0254E-05 0.25839 0.00013186 0.35687 0.00018211 510.3103556409636 70.13 0.6005 73.413 73.091 73.692 3.2828 82 53 3 0 0 0 0.23293 2 17011 16996;17011 18.146 0 1 149810 + 48155 30788 30378 30392 55595;55596 55596 0.09772388142516775 VKEASLIFI 9 Unmodified _VKEASLIFI_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.31036376953125 2 510.310418 1018.60628 0.26696 0.00013623 -0.28179 -0.0001438 -0.014824 -7.5648E-06 510.3103375202334 70.157 0.51959 73.368 73.038 73.558 3.2113 54 42 2 0 0 0 0.23293 2 17144 17099;17144 18.146 0 1 127960 + 48156 30788 30378 30392 55597;55598 55598 0.09772388142516775 VKEASLIFI 9 Unmodified _VKEASLIFI_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 510.310418 1018.60628 0.098478 5.0254E-05 0.25839 0.00013186 0.35687 0.00018211 510.3103556409636 70.13 0.6005 73.413 73.091 73.692 3.2828 0.12579 0.00021242 NaN 18.146 82 53 3 NaN NaN NaN NaN 0 NaN NaN 0 149810 + 48157 30788 30378 30392 0.09772388142516775 VKEASLIFI 9 Unmodified _VKEASLIFI_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|36|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 510.310418 1018.60628 0.26696 0.00013623 -0.28179 -0.0001438 -0.014824 -7.5648E-06 510.3103375202334 70.157 0.51959 73.368 73.038 73.558 3.2113 0.080928 -0.0003389 NaN 18.146 54 42 2 NaN NaN NaN NaN 0 NaN NaN 0 127960 + 48158 30788 30378 30392 0.09772388142516775 VKEDQLVF 8 Unmodified _VKEDQLVF_ 0 0 0 REV__L1MB2_dup4471|chr9:96907018-96907517:+|2.3151667523162605|0.3451488934306838|2.75|151.0|16|3|sense REV__L1MB2_dup4471|chr9:96907018-96907517:+|2.3151667523162605|0.3451488934306838|2.75|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 489.2684631347656 2 489.26875 976.522947 0.30241 0.00014796 -0.16447 -8.0471E-05 0.13793 6.7486E-05 489.2685991502992 76.747 0.57335 80.079 79.81 80.383 3.3315 92 59 2 0 0 0 0.82752 1 18993 18993 21.747 0 1 99385 + 48159 25736 30379 30393 55599 55599 0.03374651694673503 VKEHAIPW 8 Unmodified _VKEHAIPW_ 0 0 0 REV__L1MC3_dup83|chr1:28935935-28937388:-|2.163346246131485|0.014683942820121|7.2|151.0|25|2|sense REV__L1MC3_dup83|chr1:28935935-28937388:-|2.163346246131485|0.014683942820121|7.2|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 490.2825012207031 2 490.271627 978.528701 NaN NaN NaN NaN NaN NaN NaN 21.189 1 21.189 20.689 21.689 0 0 0 0 0.40738 1 2327 2327 0.79363 0 1 + 48160 26787 30380 30394 55600 55600 0.03857794996974917 VKEIAAMVKK 10 Unmodified _VKEIAAMVKK_ 0 0 0 REV__ENST00000455335.2_1_7:72971818-72971908:-|nuORF REV__ENST00000455335.2_1_7:72971818-72971908:-|nuORF MSMS UPN46_class_I_Rep_3 1 558.8435668945312 2 558.844102 1115.67365 NaN NaN NaN NaN NaN NaN NaN 84.513 1 84.513 84.013 85.013 0 0 0 0 0.53105 1 20109 20109 1.3295 0.63916 1 + 48161 18333 30381 30395 55601 55601 0.1204409508181925 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS UPN46_class_I_Rep_3 1 526.8217163085938 2 526.82115 1051.62775 -0.072886 -3.8398E-05 1.6088 0.00084753 1.5359 0.00080914 526.8218880256951 23.452 0.033623 23.452 23.441 23.474 0 6 2 3 0 0 0 0.48846 1 2949 2949 1.8442 0 1 186380 48162 5280 30382 30396 55602 55602 0.10399773171229754 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN46_class_I_Rep_3 1 526.8217163085938 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 32.373 1 32.373 31.873 32.873 0 0 0 0 0.38478 1 5530 5530 4.3292 0 1 48163 5280 30382 30396 55603 55603 0.10399773171229754 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.8219604492188 2 526.82115 1051.62775 0.44531 0.0002346 0.96253 0.00050708 1.4078 0.00074168 526.821556157442 110.47 0.20586 114.06 113.94 114.14 3.5835 38 26 2 0 0 0 0.48846 1 27254 27254 1.8442 0 1 432130 48164 5280 30382 30396 55604 55604 0.10399773171229754 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.8216552734375 2 526.82115 1051.62775 0.44543 0.00023466 1.0095 0.00053182 1.4549 0.00076648 526.821531175385 110.65 0.14407 114.24 114.14 114.28 3.5835 29 17 2 0 0 0 0.46434 1 27268 27268 4.3292 0 1 333620 48165 5280 30382 30396 55605 55605 0.10399773171229754 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.8216552734375 2 526.82115 1051.62775 0.44632 0.00023513 1.07 0.00056372 1.5163 0.00079885 527.3231803048009 110.73 0.1694 114.31 114.27 114.44 3.5835 37 19 3 0 0 0 0.46434 1 27308 27308 4.3292 0 1 672160 48166 5280 30382 30396 55606 55606 0.10399773171229754 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MSMS UPN47_class_I_Rep_2 3 526.8219604492188 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 116.44 1 119.94 119.44 120.44 3.4965 0 0 0 0.39518 1 28427 28427 1.8442 0 1 48167 5280 30382 30396 55607 55607 0.10399773171229754 VKEIIEPPK 9 Unmodified _VKEIIEPPK_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MATCH UPN48_class_I_Rep_1 5 2 526.82115 1051.62775 0.30064 0.00015838 1.3888 0.00073166 1.6895 0.00089004 526.8216615261871 110.58 0.11124 114.21 114.14 114.25 3.6326 0.023684 0.00038071 NaN 4.3292 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 69561 48168 5280 30382 30396 0.10399773171229754 VKEIKGYK 8 Unmodified _VKEIKGYK_ 0 0 0 ENSG00000159495|ENST00000452443|TGM7 ENSG00000159495|ENST00000452443|TGM7 ENSG00000159495|ENST00000452443|TGM7 MSMS UPN47_class_I_Rep_2 3 482.7950134277344 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 118.21 1 121.69 121.19 122.19 3.4822 0 0 0 0.40643 1 28918 28918 2.0598 1.3694 1 48169 3841 30383 30397 55608 55608 0.09207234828272703 VKEINVVF 8 Unmodified _VKEINVVF_ 0 0 0 Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.2820739746094 2 474.28166 946.548768 -0.19671 -9.3298E-05 1.6766 0.00079518 1.4799 0.00070188 474.2822151439695 21.525 0.096609 21.525 21.496 21.592 0 23 10 3 0 0 0 0.82752 1 2421 2421 0.69038 0 1 91528 48170 32982 30384 30398 55609 55609 0.07335545936962262 VKEINVVF 8 Unmodified _VKEINVVF_ 0 0 0 Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 474.2823181152344 2 474.28166 946.548768 0.23274 0.00011038 0.85441 0.00040523 1.0871 0.00051561 474.28208976641156 110.66 0.12746 114.25 114.14 114.27 3.5835 30 15 2 0 0 0 0.82752 1 27263 27263 0.69038 0 1 344000 48171 32982 30384 30398 55610 55610 0.07335545936962262 VKEINVVF 8 Unmodified _VKEINVVF_ 0 0 0 Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 474.28166 946.548768 0.25089 0.00011899 0.97478 0.00046232 1.2257 0.00058131 474.28213129054745 114.31 0.12244 114.31 114.26 114.39 0 0.042946 4.263E-05 NaN 0.69038 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 205830 48172 32982 30384 30398 0.07335545936962262 VKEINVVF 8 Unmodified _VKEINVVF_ 0 0 0 Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense Tigger1_dup10427|chr15:65538007-65539112:+|1.2827748480296637|0.04488886430441|4.84|151.0|25|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 474.28166 946.548768 0.093712 4.4446E-05 1.1563 0.0005484 1.25 0.00059285 474.28226196859725 110.61 0.12781 114.25 114.2 114.32 3.6326 -0.020991 0.00021479 NaN 0.69038 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 78977 48173 32982 30384 30398 0.07335545936962262 VKEKGLTVRF 10 Unmodified _VKEKGLTVRF_ 0 0 0 REV__ENST00000226004.7_1_17:41845545-41845623:-|nuORF REV__ENST00000226004.7_1_17:41845545-41845623:-|nuORF MSMS UPN47_class_I_Rep_2 3 588.8568115234375 2 588.858598 1175.70264 NaN NaN NaN NaN NaN NaN NaN 107.57 1 111.11 110.61 111.61 3.5345 0 0 0 0.53105 1 26033 26033 9.3831 1.2276 1 + 48174 21489 30385 30399 55611 55611 0.12181955702453706 VKEKRKKN 8 Unmodified _VKEKRKKN_ 0 0 0 REV__L1MC2_dup143|chr1:85879887-85881244:-|1.253622289370875|0.0044724226434421|8.13|150.0|11|1|sense REV__L1MC2_dup143|chr1:85879887-85881244:-|1.253622289370875|0.0044724226434421|8.13|150.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 515.3314819335938 2 515.330008 1028.64546 NaN NaN NaN NaN NaN NaN NaN 76.244 1 79.502 79.002 80.002 3.2573 0 0 0 0.40753 1 18949 18949 0.6015 0 1 + 48175 26484 30386 30400 55612 55612 0.13228533216761207 VKEKSFQLK 9 Unmodified _VKEKSFQLK_ 0 0 0 REV__MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|18|2|sense REV__MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 553.8298950195312 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 93.711 1 97.116 96.616 97.616 3.4052 0 0 0 0.39518 1 23348 23348 1.8442 1.2427 1 + 48176 31447 30387 30401 55613 55613 0.10094577919812764 VKEKVCRLN 9 Unmodified _VKEKVCRLN_ 0 0 0 ENSG00000089558|ENST00000264661|KCNH4 ENSG00000089558|ENST00000264661|KCNH4 ENSG00000089558|ENST00000264661|KCNH4 MULTI-SECPEP UPN46_class_I_Rep_3 1 544.815673828125 2 544.815876 1087.6172 -0.22525 -0.00012272 0.096193 5.2408E-05 -0.12906 -7.0312E-05 544.8158013248393 14.042 0.1028 14.042 13.989 14.091 0 17 11 2 0 0 0 0.12532 1 540 540 0.52476 0 1 28354 48177 1338 30388 30402 55614 55614 0.07689467245177184 VKENDIVF 8 Unmodified _VKENDIVF_ 0 0 0 ENST00000461129.5_1_6:126319428-126329623:+|nuORF;nc|ENSG00000066651|Q7Z4G4-3|TRMT11;nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 ENST00000461129.5_1_6:126319428-126329623:+|nuORF ENST00000461129.5_1_6:126319428-126329623:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 482.2604675292969 2 482.260925 962.507297 0.18737 9.0362E-05 -0.1031 -4.9723E-05 0.084266 4.0638E-05 482.2607438704374 62.811 0.66335 66.067 65.698 66.362 3.2558 74 40 3 0 0 0 0.82752 1 14775 14775 12.532 0 1 215630 48178 1024 30389 30403 55615 55615 0.02454365177618456 VKENDIVF 8 Unmodified _VKENDIVF_ 0 0 0 ENST00000461129.5_1_6:126319428-126329623:+|nuORF;nc|ENSG00000066651|Q7Z4G4-3|TRMT11;nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 ENST00000461129.5_1_6:126319428-126329623:+|nuORF ENST00000461129.5_1_6:126319428-126329623:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 482.26019287109375 2 482.260925 962.507297 0.075548 3.6434E-05 0.091833 4.4288E-05 0.16738 8.0721E-05 482.26087233095024 62.762 0.75117 65.932 65.635 66.386 3.1698 84 43 3 0 0 0 0.82752 1 14862 14862 12.532 0 1 180270 48179 1024 30389 30403 55616 55616 0.02454365177618456 VKEPTNKYL 9 Unmodified _VKEPTNKYL_ 0 0 0 REV__nc|ENSG00000169679|O43683-3|BUB1 REV__nc|ENSG00000169679|O43683-3|BUB1 MSMS UPN47_class_I_Rep_2 3 546.3059692382812 2 546.308406 1090.60226 NaN NaN NaN NaN NaN NaN NaN 26.061 1 29.556 29.056 30.056 3.4945 0 0 0 0.39036 1 3714 3714 2.9952 0.69251 1 + 48180 20322 30390 30404 55617 55617 0.060582986487816015 VKETRSRIYI 10 Unmodified _VKETRSRIYI_ 0 0 0 L1ME3B_dup2623|chr5:137992690-137993343:+|1.817984757611796|0.0197788257144294|6.52|151.0|24|3|sense L1ME3B_dup2623|chr5:137992690-137993343:+|1.817984757611796|0.0197788257144294|6.52|151.0|24|3|sense L1ME3B_dup2623|chr5:137992690-137993343:+|1.817984757611796|0.0197788257144294|6.52|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 422.2501525878906 3 422.250583 1263.72992 NaN NaN NaN NaN NaN NaN NaN 108.21 1 108.21 107.71 108.71 0 0 0 0 0.53105 1 26446 26446 1.9064 0.1641 1 48181 12705 30391 30405 55618 55618 0.10860439242856046 VKEVELIPTL 10 Unmodified _VKEVELIPTL_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS UPN46_class_I_Rep_3 1 570.8480834960938 2 570.847364 1139.68018 0.19201 0.00010961 1.2129 0.0006924 1.4049 0.000802 570.8479498456471 28.976 0.10253 28.976 28.908 29.01 0 10 6 2 0 0 0 0.56309 1 4529 4529 1.6526 0 1 123550 48182 5122 30392 30406 55619 55619 0.11592311514186804 VKEVNLQKK 9 Unmodified _VKEVNLQKK_ 0 0 0 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 MSMS UPN47_class_I_Rep_3 4 543.2724609375 2 543.337498 1084.66044 NaN NaN NaN NaN NaN NaN NaN 90.481 1 93.879 93.379 94.379 3.3976 0 0 0 0.39428 1 22676 22676 2.0598 0 1 48183 5662 30393 30407 55620 55620 0.12149980294088891 VKEVRKDHI 9 Unmodified _VKEVRKDHI_ 0 0 0 L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|47|3|sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|47|3|sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|47|3|sense MSMS UPN48_class_I_Rep_3 7 562.3349609375 2 562.332747 1122.65094 NaN NaN NaN NaN NaN NaN NaN 110.53 1 114.19 113.69 114.69 3.6654 0 0 0 0.37891 1 26228 26228 5.7319 1.7875 1 48184 10945 30394 30408 55621 55621 0.09452212008568495 VKFDMRCFR 9 Unmodified _VKFDMRCFR_ 0 0 0 REV__nc|ENSG00000120729|Q9UBF9-2|MYOT REV__nc|ENSG00000120729|Q9UBF9-2|MYOT MSMS UPN48_class_I_Rep_2 6 601.3026733398438 2 601.302078 1200.5896 NaN NaN NaN NaN NaN NaN NaN 77.597 1 81.22 80.72 81.72 3.6222 0 0 0 0.38639 1 18374 18374 3.9444 0.94915 1 + 48185 18710 30395 30409 55622 55622 -0.0026675928672830196 VKFDPQIG 8 Unmodified _VKFDPQIG_ 0 0 0 REV__ENST00000556170.5_1_14:75573136-75593624:-|nuORF REV__ENST00000556170.5_1_14:75573136-75593624:-|nuORF MSMS UPN46_class_I_Rep_3 1 452.2690124511719 2 452.25036 902.486168 NaN NaN NaN NaN NaN NaN NaN 42.215 1 42.215 41.715 42.715 0 0 0 0 0.40643 1 8341 8341 2.0598 1.2661 1 + 48186 22990 30396 30410 55623 55623 0.031023998687714993 VKFESWRH 8 Unmodified _VKFESWRH_ 0 0 0 REV__MER11C_dup678|chr11:60217545-60218617:+|2.000746003647164|0.0729745439583688|4.78|151.0|50|2|anti-sense REV__MER11C_dup678|chr11:60217545-60218617:+|2.000746003647164|0.0729745439583688|4.78|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_2 6 544.7846069335938 2 544.785433 1087.55631 NaN NaN NaN NaN NaN NaN NaN 78.111 1 81.733 81.233 82.233 3.6222 0 0 0 0.40625 1 18524 18524 2.3027 0.65011 1 + 48187 31108 30397 30411 55624 55624 0.016036982572359193 VKFGELASL 9 Unmodified _VKFGELASL_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS UPN47_class_I_Rep_2 3 482.27923583984375 2 482.279118 962.543683 0.21091 0.00010172 -0.30943 -0.00014923 -0.098527 -4.7517E-05 482.2789484666488 61.74 0.62289 64.999 64.62 65.243 3.2594 49 38 2 0 0 0 0.38714 2 14543 14543;14599 8.7454 1.1365 1 96590 + 48188 18593 30398 30412 55625;55626 55625 0.060912420743079565 VKFGELASL 9 Unmodified _VKFGELASL_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS UPN47_class_I_Rep_3 4 482.2788391113281 2 482.279118 962.543683 0.059015 2.8462E-05 -0.33581 -0.00016195 -0.27679 -0.00013349 482.2789776260217 61.705 0.40583 64.872 64.781 65.187 3.1667 43 28 3 0 0 0 0.38714 2 14584 14584;14637 8.7454 1.1365 1 84066 + 48189 18593 30398 30412 55627;55628 55627 0.060912420743079565 VKFIPEDF 8 Unmodified _VKFIPEDF_ 0 0 0 L1MB7_dup18239|chr15:64526090-64526606:-|1.721999126472893|0.0111959073334809|7.26|150.0|34|3|anti-sense L1MB7_dup18239|chr15:64526090-64526606:-|1.721999126472893|0.0111959073334809|7.26|150.0|34|3|anti-sense L1MB7_dup18239|chr15:64526090-64526606:-|1.721999126472893|0.0111959073334809|7.26|150.0|34|3|anti-sense MSMS UPN47_class_I_Rep_1 2 497.7646179199219 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 27.173 1 30.939 30.439 31.439 3.7662 0 0 0 0.40625 1 4000 4000 2.3027 0 1 48190 10758 30399 30413 55629 55629 0.020115531829901556 VKFKKMKQL 9 Unmodified _VKFKKMKQL_ 0 0 0 REV__AluJo_dup46522|chr11:33262819-33263169:-|1.267888401064648|0.0670489977159685|4.24|151.0|5|2|sense REV__AluJo_dup46522|chr11:33262819-33263169:-|1.267888401064648|0.0670489977159685|4.24|151.0|5|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 574.8380126953125 2 575.362462 1148.71037 0.50893 0.00029282 -1.3104 -0.00075395 -0.80146 -0.00046113 575.3614263183225 65.385 0.14113 68.865 68.779 68.92 3.4792 12 9 2 0 0 0 0.12532 1 14853 14853 0.52476 0 1 85001 + 48191 16997 30400 30414 55630 55630 0.141963916983741 VKFLKGFL 8 Unmodified _VKFLKGFL_ 0 0 0 ORSL-2b_dup679|chr21:34851152-34851279:+|1.279132753379031|0.0485664688171988|4.72|150.0|11|3|anti-sense ORSL-2b_dup679|chr21:34851152-34851279:+|1.279132753379031|0.0485664688171988|4.72|150.0|11|3|anti-sense ORSL-2b_dup679|chr21:34851152-34851279:+|1.279132753379031|0.0485664688171988|4.72|150.0|11|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3062438964844 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 110.97 1 110.97 110.47 111.47 0 0 0 0 0.40746 1 27345 27345 0.69038 0 1 48192 16872 30401 30415 55631 55631 0.11805030558900853 VKFMSILTL 9 Unmodified _VKFMSILTL_ 0 0 0 L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|53|1|anti-sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|53|1|anti-sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|53|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.3146362304688 2 526.314646 1050.61474 0.09707 5.1089E-05 0.077682 4.0885E-05 0.17475 9.1974E-05 526.3146032040952 71.233 1.5443 74.523 73.86 75.405 3.2899 348 140 3 0 0 0 0.38714 1 17234 17234 8.7454 1.4562 1 760590 48193 12531 30402 30416 55632 55632 0.09145618787488274 VKFPQLLTR 9 Unmodified _VKFPQLLTR_ 0 0 0 REV__ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|101|2|anti-sense REV__ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|101|2|anti-sense MSMS UPN47_class_I_Rep_1 2 551.3419799804688 2 551.342584 1100.67061 NaN NaN NaN NaN NaN NaN NaN 106.52 1 110.23 109.73 110.73 3.7088 0 0 0 0.4007 1 26114 26114 0.52476 0 1 + 48194 23255 30403 30417 55633 55633 0.12430588019287825 VKFQNTKDKG 10 Unmodified _VKFQNTKDKG_ 0 0 0 HAL1_dup603|chr1:86366750-86367501:+|1.2540793367027685|0.3221593973854382|1.96|150.0|22|3|sense HAL1_dup603|chr1:86366750-86367501:+|1.2540793367027685|0.3221593973854382|1.96|150.0|22|3|sense HAL1_dup603|chr1:86366750-86367501:+|1.2540793367027685|0.3221593973854382|1.96|150.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 582.823486328125 2 582.822212 1163.62987 NaN NaN NaN NaN NaN NaN NaN 41.147 1 44.898 44.398 45.398 3.7508 0 0 0 0.53105 1 7486 7486 2.4985 0.65425 1 48195 7899 30404 30418 55634 55634 0.05460201909022544 VKFVKMTL 8 Unmodified _VKFVKMTL_ 0 0 0 REV__ERV3-16A3_I-int_dup722|chr2:143263944-143264508:-|1.1589030630201982|0.0046480237120874|7.96|151.0|2|1|sense REV__ERV3-16A3_I-int_dup722|chr2:143263944-143264508:-|1.1589030630201982|0.0046480237120874|7.96|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 483.296875 2 483.296256 964.57796 NaN NaN NaN NaN NaN NaN NaN 110.62 1 110.62 110.12 111.12 0 0 0 0 0.40746 1 27246 27246 0.69038 0 1 + 48196 23251 30405 30419 55635 55635 0.09425366961579584 VKFVNHQP 8 Unmodified _VKFVNHQP_ 0 0 0 REV__L1MB2_dup1098|chr2:171135796-171136446:+|1.3865848408660189|0.0061169742908727|7.82|151.0|43|3|anti-sense REV__L1MB2_dup1098|chr2:171135796-171136446:+|1.3865848408660189|0.0061169742908727|7.82|151.0|43|3|anti-sense MSMS UPN48_class_I_Rep_2 6 484.7671813964844 2 484.769252 967.52395 NaN NaN NaN NaN NaN NaN NaN 93.634 1 97.404 96.904 97.904 3.77 0 0 0 0.40625 1 22265 22265 2.3027 0.65011 1 + 48197 25691 30406 30420 55636 55636 0.038889108542207396 VKFVNHQP 8 Unmodified _VKFVNHQP_ 0 0 0 REV__L1MB2_dup1098|chr2:171135796-171136446:+|1.3865848408660189|0.0061169742908727|7.82|151.0|43|3|anti-sense REV__L1MB2_dup1098|chr2:171135796-171136446:+|1.3865848408660189|0.0061169742908727|7.82|151.0|43|3|anti-sense MSMS UPN48_class_I_Rep_3 7 484.76727294921875 2 484.769252 967.52395 NaN NaN NaN NaN NaN NaN NaN 93.576 1 97.468 96.968 97.968 3.8914 0 0 0 0.40625 1 22178 22178 2.3027 0.4585 1 + 48198 25691 30406 30420 55637 55637 0.038889108542207396 VKFWVALCCY 10 Unmodified _VKFWVALCCY_ 0 0 0 REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|227|3|anti-sense REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|227|3|anti-sense MSMS UPN48_class_I_Rep_3 7 616.3056640625 2 616.303755 1230.59296 NaN NaN NaN NaN NaN NaN NaN 38.764 1 42.424 41.924 42.924 3.6595 0 0 0 0.53105 1 6699 6699 1.4819 0.15237 1 + 48199 29120 30407 30421 55638 55638 -0.013115092327325328 VKGAGRVR 8 Unmodified _VKGAGRVR_ 0 0 0 MLT1D_dup8118|chr7:30277136-30277631:-|1.505845660116798|0.0310588167904665|5.6|151.0|16|3|sense MLT1D_dup8118|chr7:30277136-30277631:-|1.505845660116798|0.0310588167904665|5.6|151.0|16|3|sense MLT1D_dup8118|chr7:30277136-30277631:-|1.505845660116798|0.0310588167904665|5.6|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 421.7698059082031 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 87.306 1 91.024 90.524 91.524 3.7171 0 0 0 0.40746 1 20772 20772 0.69038 0 1 48200 16359 30408 30422 55639 55639 0.09751750293935402 VKGFYFPNY 9 Unmodified _VKGFYFPNY_ 0 0 0 REV__L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|149|3|anti-sense REV__L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|149|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 568.287109375 2 567.784567 1133.55458 0.46443 0.0002637 -0.80891 -0.00045929 -0.34448 -0.00019559 567.7835805617214 55.068 0.14874 58.576 58.51 58.659 3.5082 11 7 2 0 0 0 0.42249 1 11733 11733 6.7232 1.4263 1 85505 + 48201 24396 30409 30423 55640 55640 -0.006853555513998799 VKGIKYKE 8 Unmodified _VKGIKYKE_ 0 0 0 REV__nc|ENSG00000170390|Q8N568-2|DCLK2 REV__nc|ENSG00000170390|Q8N568-2|DCLK2 MULTI-MSMS UPN46_class_I_Rep_3 1 482.7955017089844 2 482.794935 963.575317 -0.11696 -5.6468E-05 1.5145 0.00073121 1.3976 0.00067474 482.79565023498293 24.12 0.11288 24.12 24.059 24.172 0 17 10 2 0 0 0 0.82752 1 3125 3125 2.3027 0 1 78873 + 48202 20361 30410 30424 55641 55641 0.09207234828272703 VKGIKYKE 8 Unmodified _VKGIKYKE_ 0 0 0 REV__nc|ENSG00000170390|Q8N568-2|DCLK2 REV__nc|ENSG00000170390|Q8N568-2|DCLK2 MULTI-MSMS UPN46_class_I_Rep_3 1 482.7954406738281 2 482.794935 963.575317 -0.094688 -4.5715E-05 1.4932 0.00072089 1.3985 0.00067517 482.79558105324423 25.112 0.10669 25.112 25.066 25.173 0 16 9 2 0 0 0 0.82752 1 3398 3398 2.3027 0 1 64735 + 48203 20361 30410 30424 55642 55642 0.09207234828272703 VKGKERILKT 10 Unmodified _VKGKERILKT_ 0 0 0 L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|106|3|sense;L1M3f_dup57|chr1:213185668-213186913:-|1.2307813740649065|0.0196004343331974|5.97|151.0|17|2|sense L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|106|3|sense L1MA3_dup1286|chr3:107609146-107613181:-|1.5198360893746596|0.0368926090108803|5.36|151.0|106|3|sense MSMS UPN47_class_I_Rep_3 4 586.7920532226562 2 586.379697 1170.74484 NaN NaN NaN NaN NaN NaN NaN 40.675 1 43.912 43.412 44.412 3.2372 0 0 0 0.53105 1 8172 8172 0.40072 0 1 48204 8808 30411 30425 55643 55643 0.1662993111083324 VKGMKHRK 8 Unmodified _VKGMKHRK_ 0 0 0 ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5;nc|ENSG00000197375|O76082-2|SLC22A5;ENST00000475308.1_1_5:131726319-131729961:+|nuORF ENST00000461013.5_1_5:131719758-131729961:+|nuORF ENST00000461013.5_1_5:131719758-131729961:+|nuORF MSMS UPN48_class_I_Rep_2 6 492.29803466796875 2 492.300196 982.585839 NaN NaN NaN NaN NaN NaN NaN 68.762 1 72.27 71.77 72.77 3.5083 0 0 0 0.40625 1 15880 15880 2.3027 0.82083 1 48205 5365 30412 30426 55644 55644 0.09384939001722614 VKGMTKVI 8 Unmodified _VKGMTKVI_ 0 0 0 REV__L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|119|3|anti-sense REV__L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|119|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 438.27252197265625 2 438.272781 874.531009 0.10602 4.6466E-05 -0.33335 -0.0001461 -0.22733 -9.9634E-05 438.272715104344 59.255 0.63666 62.778 62.473 63.11 3.5231 48 42 2 0 0 0 0.82752 1 12861 12861 2.5775 0 1 86204 + 48206 30114 30413 30427 55645 55645 0.08872507410444541 VKGMTKVI 8 Unmodified _VKGMTKVI_ 0 0 0 REV__L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|119|3|anti-sense REV__L1PA8_dup4333|chr8:144989087-144991263:-|1.6976810793916477|0.0896804427224245|4.24|151.0|119|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 438.272781 874.531009 0.09944 4.3582E-05 -0.58692 -0.00025723 -0.48748 -0.00021365 438.2730302641237 59.208 0.20057 62.688 62.587 62.787 3.4801 -0.04527 -0.00019653 NaN 2.5775 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 115140 + 48207 30114 30413 30427 0.08872507410444541 VKGPQQTII 9 Unmodified _VKGPQQTII_ 0 0 0 L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 492.2982482910156 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 71.468 1 74.934 74.434 75.434 3.466 0 0 0 0.38784 1 16710 16710 3.5965 0 1 48208 8750 30414 30428 55646 55646 0.08914333339953373 VKGPQQTII 9 Unmodified _VKGPQQTII_ 0 0 0 L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 492.2977294921875 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 62.835 1 66.309 65.809 66.809 3.4738 0 0 0 0.3967 1 14077 14077 1.4819 0 1 48209 8750 30414 30428 55647 55647 0.08914333339953373 VKGPQQTII 9 Unmodified _VKGPQQTII_ 0 0 0 L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 492.2981262207031 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 68.427 1 71.936 71.436 72.436 3.5083 0 0 0 0.38784 1 15780 15780 3.5965 0 1 48210 8750 30414 30428 55648 55648 0.08914333339953373 VKGPQQTII 9 Unmodified _VKGPQQTII_ 0 0 0 L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense L1M3_dup1283|chr4:55967743-55968466:+|1.6300526441025722|0.2131712050489032|2.93|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 492.29705810546875 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 64.914 1 68.422 67.922 68.922 3.5077 0 0 0 0.38784 1 14629 14629 3.5965 0 1 48211 8750 30414 30428 55649 55649 0.08914333339953373 VKGPSLKTK 9 Unmodified _VKGPSLKTK_ 0 0 0 REV__L1M4_dup16654|chr15:42252678-42253582:-|2.9351280663082786|0.0278345955989197|6.72|151.0|36|1|anti-sense REV__L1M4_dup16654|chr15:42252678-42253582:-|2.9351280663082786|0.0278345955989197|6.72|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_2 6 479.308837890625 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 60.964 1 64.443 63.943 64.943 3.4785 0 0 0 0.39598 1 13503 13503 1.6526 0.85899 1 + 48212 24387 30415 30429 55650 55650 0.12182923719603878 VKGPSLKTKGL 11 Unmodified _VKGPSLKTKGL_ 0 0 0 REV__L1M4_dup16654|chr15:42252678-42253582:-|2.9351280663082786|0.0278345955989197|6.72|151.0|36|1|anti-sense REV__L1M4_dup16654|chr15:42252678-42253582:-|2.9351280663082786|0.0278345955989197|6.72|151.0|36|1|anti-sense MSMS UPN47_class_I_Rep_3 4 564.3594360351562 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 82.319 1 85.656 85.156 86.156 3.337 0 0 0 0.38417 1 20630 20630 0.96228 0.43751 1 + 48213 24387 30416 30430 55651 55651 0.14910839845242663 VKGRSPLL 8 Unmodified _VKGRSPLL_ 0 0 0 REV__L1MEj_dup1781|chr12:121436633-121437665:+|1.679062216276646|0.1584994207031306|3.41|151.0|65|3|anti-sense REV__L1MEj_dup1781|chr12:121436633-121437665:+|1.679062216276646|0.1584994207031306|3.41|151.0|65|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 434.7805480957031 2 435.281995 868.549437 -0.018767 -8.1691E-06 0.96028 0.00041799 0.94151 0.00040982 435.2824325706542 74.649 0.062813 78.139 78.125 78.188 3.49 5 3 2 0 0 0 0.72333 1 17653 17653 2.3027 0 1 425830 + 48214 28812 30417 30431 55652 55652 0.10990385376669565 VKGVAFDKT 9 Unmodified _VKGVAFDKT_ 0 0 0 ENSG00000185974|ENST00000335678|GRK1 ENSG00000185974|ENST00000335678|GRK1 ENSG00000185974|ENST00000335678|GRK1 MULTI-MSMS UPN46_class_I_Rep_3 1 482.7768859863281 2 482.776742 963.538931 0.071739 3.4634E-05 0.15644 7.5527E-05 0.22818 0.00011016 482.7765868718154 32.658 0.72631 32.658 32.292 33.018 0 92 51 3 0 0 0 0.43153 1 5526 5526 6.2058 0 1 239790 48215 5135 30418 30432 55653 55653 0.05570357931560466 VKGWPNRL 8 Unmodified _VKGWPNRL_ 0 0 0 REV__nc|ENSG00000214711|A8MX76-2|CAPN14 REV__nc|ENSG00000214711|A8MX76-2|CAPN14 MSMS UPN48_class_I_Rep_1 5 485.2853088378906 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 39.514 1 43.019 42.519 43.519 3.5048 0 0 0 0.40625 1 6987 6987 2.3027 0 1 + 48216 21266 30419 30433 55654 55654 0.07004903608185487 VKGWPNRL 8 Unmodified _VKGWPNRL_ 0 0 0 REV__nc|ENSG00000214711|A8MX76-2|CAPN14 REV__nc|ENSG00000214711|A8MX76-2|CAPN14 MSMS UPN48_class_I_Rep_2 6 485.2857360839844 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 39.465 1 43.195 42.695 43.695 3.7297 0 0 0 0.40625 1 7005 7005 2.3027 0 1 + 48217 21266 30419 30433 55655 55655 0.07004903608185487 VKGWPNRL 8 Unmodified _VKGWPNRL_ 0 0 0 REV__nc|ENSG00000214711|A8MX76-2|CAPN14 REV__nc|ENSG00000214711|A8MX76-2|CAPN14 MSMS UPN48_class_I_Rep_2 6 485.2862548828125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 58.394 1 61.893 61.393 62.393 3.4987 0 0 0 0.40746 1 12714 12714 0.69038 0 1 + 48218 21266 30419 30433 55656 55656 0.07004903608185487 VKGWRKLYKAN 11 Unmodified _VKGWRKLYKAN_ 0 0 0 L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 454.938232421875 3 454.93834 1361.79319 0.036245 1.6489E-05 -0.097445 -4.4332E-05 -0.0612 -2.7842E-05 454.9382180242674 43.08 1.0475 46.59 46.117 47.165 3.5103 204 83 4 0 0 0 0.63233 3 8018 7970;8018;8055 4.4062 4.4062 1 313850 48219 15464 30420 30434 55657;55658;55659 55658 0.12676424750748083 VKGWRKLYKAN 11 Unmodified _VKGWRKLYKAN_ 0 0 0 L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 454.9380187988281 3 454.93834 1361.79319 0.095914 4.3635E-05 -0.10004 -4.551E-05 -0.0041215 -1.875E-06 454.93820486981554 42.762 1.0309 46.52 45.97 47.001 3.7579 184 89 3 0 0 0 0.65891 2 7892 7892;8007 2.4348 2.4348 1 382330 48220 15464 30420 30434 55660;55661 55660 0.12676424750748083 VKGWRKLYKAN 11 Unmodified _VKGWRKLYKAN_ 0 0 0 L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 454.9382019042969 3 454.93834 1361.79319 0.090997 4.1398E-05 -0.11855 -5.3935E-05 -0.027556 -1.2536E-05 454.93821152459793 42.882 1.1296 46.523 46.022 47.152 3.6415 203 89 3 0 0 0 0.63233 5 7852 7810;7852;7893;7931;7979 4.4062 4.4062 1 314130 48221 15464 30420 30434 55662;55663;55664;55665;55666 55663 0.12676424750748083 VKGWRKLYKAN 11 Unmodified _VKGWRKLYKAN_ 0 0 0 L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|138|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 455.2734069824219 3 454.93834 1361.79319 0.090997 4.1398E-05 -0.11855 -5.3935E-05 -0.027556 -1.2536E-05 454.93821152459793 42.882 1.1296 46.523 46.022 47.152 3.6415 203 89 3 0 0 0 22.551 1 7868 7868 2.4348 2.4348 1 314130 48222 15464 30420 30434 55667 55667 0.12676424750748083 VKGYKHFNDS 10 Unmodified _VKGYKHFNDS_ 0 0 0 L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|31|3|anti-sense L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|31|3|anti-sense L1ME4c_dup7862|chr17:65016740-65017169:-|1.177956139830712|0.2045116117643959|2.53|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_2 6 597.7968139648438 2 597.798737 1193.58292 NaN NaN NaN NaN NaN NaN NaN 64.795 1 68.274 67.774 68.774 3.4792 0 0 0 0.53105 1 14678 14678 1.6526 0.85899 1 48223 12959 30421 30435 55668 55668 -0.0061265764209110785 VKHDRRSR 8 Unmodified _VKHDRRSR_ 0 0 0 REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|56|2|sense REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|56|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.30517578125 2 527.304855 1052.59516 0.29989 0.00015813 0.56418 0.00029749 0.86407 0.00045563 527.3051114086568 90.247 0.54369 93.704 93.483 94.027 3.4571 115 76 2 0 0 0 0.82752 2 22404 22404;22433 0.79363 0 1 141980 + 48224 27881 30422 30436 55669;55670 55669 0.07096423611619684 VKHDRRSR 8 Unmodified _VKHDRRSR_ 0 0 0 REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|56|2|sense REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|56|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 527.305419921875 2 527.304855 1052.59516 0.4752 0.00025058 0.65391 0.00034481 1.1291 0.00059539 527.3051186266487 89.867 0.721 93.709 93.376 94.097 3.8421 163 96 2 0 0 0 0.82752 1 21401 21401 0.79363 0 1 334320 + 48225 27881 30422 30436 55671 55671 0.07096423611619684 VKHFSGYFLT 10 Unmodified _VKHFSGYFLT_ 0 0 0 REV__ENSG00000111799|ENST00000322507|COL12A1 REV__ENSG00000111799|ENST00000322507|COL12A1 MULTI-MSMS UPN48_class_I_Rep_1 5 599.8161010742188 2 599.816399 1197.61824 0.52754 0.00031643 -0.23722 -0.00014229 0.29032 0.00017414 599.8162151075894 64.593 0.1593 68.047 67.952 68.112 3.4541 20 12 2 0 0 0 0.56033 1 14630 14630 3.5965 1.5367 1 94382 + 48226 18466 30423 30437 55672 55672 0.027340048857013244 VKHHVFSLL 9 Unmodified _VKHHVFSLL_ 0 0 0 L1MA5A_dup919|chr4:77810513-77811028:-|1.1185108817227272|0.051896103252737|4.43|151.0|16|3|sense L1MA5A_dup919|chr4:77810513-77811028:-|1.1185108817227272|0.051896103252737|4.43|151.0|16|3|sense L1MA5A_dup919|chr4:77810513-77811028:-|1.1185108817227272|0.051896103252737|4.43|151.0|16|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.321651 1078.62875 0.34465 0.00018622 0.41269 0.00022298 0.75733 0.0004092 540.321741614826 43.139 0.045292 43.139 43.12 43.165 0 8 2 4 0 0 0 0.48846 1 8594 8594 1.8442 0 1 1109800 48227 9953 30424 30438 55673 55673 0.09258032330808419 VKHKKKKR 8 Unmodified _VKHKKKKR_ 0 0 0 REV__L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|16|1|sense REV__L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|16|1|sense MSMS UPN47_class_I_Rep_3 4 526.3662719726562 2 526.364185 1050.71382 NaN NaN NaN NaN NaN NaN NaN 79.99 1 83.299 82.799 83.799 3.309 0 0 0 0.40738 1 20017 20017 0.79363 0 1 + 48228 26103 30425 30439 55674 55674 0.19048822587274117 VKHKKKKR 8 Unmodified _VKHKKKKR_ 0 0 0 REV__L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|16|1|sense REV__L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 526.8223876953125 2 526.364185 1050.71382 NaN NaN NaN NaN NaN NaN NaN 110.62 1 114.25 113.75 114.75 3.6326 0 0 0 0.40738 1 26849 26849 0.79363 0 1 + 48229 26103 30425 30439 55675 55675 0.19048822587274117 VKHKLTIL 8 Unmodified _VKHKLTIL_ 0 0 0 L1ME1_dup1762|chr1:174914663-174915460:-|1.0687801297763129|0.0078817717474058|7.08|151.0|27|3|sense L1ME1_dup1762|chr1:174914663-174915460:-|1.0687801297763129|0.0078817717474058|7.08|151.0|27|3|sense L1ME1_dup1762|chr1:174914663-174915460:-|1.0687801297763129|0.0078817717474058|7.08|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 476.35736083984375 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 76.256 1 76.256 75.756 76.756 0 0 0 0 0.40746 1 17776 17776 0.69038 0 1 48230 12256 30426 30440 55676 55676 0.1503981796190601 VKHKLTIL 8 Unmodified _VKHKLTIL_ 0 0 0 L1ME1_dup1762|chr1:174914663-174915460:-|1.0687801297763129|0.0078817717474058|7.08|151.0|27|3|sense L1ME1_dup1762|chr1:174914663-174915460:-|1.0687801297763129|0.0078817717474058|7.08|151.0|27|3|sense L1ME1_dup1762|chr1:174914663-174915460:-|1.0687801297763129|0.0078817717474058|7.08|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 476.306396484375 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 76.426 1 76.426 75.926 76.926 0 0 0 0 0.40746 1 17827 17827 0.69038 0 1 48231 12256 30426 30440 55677 55677 0.1503981796190601 VKHRKHYR 8 Unmodified _VKHRKHYR_ 0 0 0 REV__LTR21A_dup54|chrX:74249940-74250412:+|3.4586797297157084|0.2295714140843583|3.91|151.0|9|2|sense REV__LTR21A_dup54|chrX:74249940-74250412:+|3.4586797297157084|0.2295714140843583|3.91|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.333416 1122.65228 NaN NaN NaN NaN NaN NaN NaN 35.694 1 35.694 35.194 36.194 0 0 0 0 0.40746 1 6529 6529 0.69038 0.088878 1 + 48232 30877 30427 30441 55678 55678 0.09585890887979076 VKHRKNKI 8 Unmodified _VKHRKNKI_ 0 0 0 REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|134|3|sense REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|134|3|sense MSMS UPN48_class_I_Rep_3 7 511.7355651855469 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 27.138 1 30.893 30.393 31.393 3.7555 0 0 0 0.40746 1 3528 3528 0.69038 0 1 + 48233 29449 30428 30442 55679 55679 0.14092256799222014 VKHSSVNVK 9 Unmodified _VKHSSVNVK_ 0 0 0 L1PA4_dup10402|chr14:60936234-60940365:-|2.131848364914941|0.1492138016200578|3.84|151.0|14|1|sense;L1PA7_dup3224|chr4:73290079-73293229:-|1.0822548956932798|0.2682737532091677|2.01|151.0|95|3|sense;L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|105|3|sense L1PA4_dup10402|chr14:60936234-60940365:-|2.131848364914941|0.1492138016200578|3.84|151.0|14|1|sense L1PA4_dup10402|chr14:60936234-60940365:-|2.131848364914941|0.1492138016200578|3.84|151.0|14|1|sense MSMS UPN47_class_I_Rep_2 3 499.2911071777344 2 499.293091 996.571629 NaN NaN NaN NaN NaN NaN NaN 63.074 1 66.33 65.83 66.83 3.2558 0 0 0 0.39518 1 14940 14940 1.8442 0 1 48234 14300 30429 30443 55680 55680 0.07320565054430972 VKHYIRLRY 9 Unmodified _VKHYIRLRY_ 0 0 0 REV__L1ME3B_dup6896|chr15:99678701-99679765:+|1.3054823363548314|0.4851167266323695|1.43|151.0|40|1|anti-sense REV__L1ME3B_dup6896|chr15:99678701-99679765:+|1.3054823363548314|0.4851167266323695|1.43|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 624.3719482421875 2 624.372207 1246.72986 0.53752 0.00033561 -0.00032174 -2.0089E-07 0.5372 0.00033541 624.3720171509258 91.605 0.57864 95.311 95.008 95.586 3.7053 155 84 2 0 0 0 0.50088 1 22894 22894 0.52476 0 1 4448400 + 48235 28080 30430 30444 55681 55681 0.11636484033510897 VKIAIAKH 8 Unmodified _VKIAIAKH_ 0 0 0 REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|79|3|sense REV__L1MC1_dup9660|chr12:22648054-22650689:-|2.355048303349062|0.3346898884564358|2.81|151.0|79|3|sense MSMS UPN47_class_I_Rep_1 2 440.2922058105469 2 440.292362 878.570172 NaN NaN NaN NaN NaN NaN NaN 56.42 1 59.877 59.377 60.377 3.4572 0 0 0 0.40746 1 12884 12884 0.69038 0 1 + 48236 26631 30431 30445 55682 55682 0.12602975756306023 VKIENSEQY 9 Unmodified _VKIENSEQY_ 0 0 0 REV__L1MEg_dup9979|chr11:43471677-43472075:+|2.962604043598178|0.0378177789785564|6.29|151.0|1|1|sense REV__L1MEg_dup9979|chr11:43471677-43472075:+|2.962604043598178|0.0378177789785564|6.29|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 555.2762451171875 2 555.277303 1108.54005 -0.027836 -1.5457E-05 -0.54339 -0.00030173 -0.57122 -0.00031719 555.2768975754486 33.953 0.8993 37.651 37.342 38.241 3.6983 140 64 3 0 0 0 0.45441 1 6161 6161 4.897 0 1 438750 + 48237 28792 30432 30446 55683 55683 -0.009874724901919762 VKIGTGHQKSL 11 Unmodified _VKIGTGHQKSL_ 0 0 0 REV__L1PB1_dup6982|chr9:21845046-21846886:+|2.087200155594382|0.0702589811533972|4.89|151.0|27|2|sense REV__L1PB1_dup6982|chr9:21845046-21846886:+|2.087200155594382|0.0702589811533972|4.89|151.0|27|2|sense MSMS UPN46_class_I_Rep_3 1 584.3486328125 2 584.345855 1166.67716 NaN NaN NaN NaN NaN NaN NaN 38.441 1 38.441 37.941 38.941 0 0 0 0 0.38417 1 7319 7319 4.1895 0.59301 1 + 48238 30479 30433 30447 55684 55684 0.10048481180024282 VKIHVLFG 8 Unmodified _VKIHVLFG_ 0 0 0 REV__Tigger1_dup168|chr1:44465629-44467205:-|25.84770617420877|0.0175780157683326|10.52|151.0|56|1|anti-sense REV__Tigger1_dup168|chr1:44465629-44467205:-|25.84770617420877|0.0175780157683326|10.52|151.0|56|1|anti-sense MSMS UPN47_class_I_Rep_2 3 456.7724304199219 2 456.786913 911.559273 NaN NaN NaN NaN NaN NaN NaN 17.861 1 21.248 20.748 21.748 3.387 0 0 0 0.40738 1 1411 1411 0.79363 0 1 + 48239 32363 30434 30448 55685 55685 0.09995573382036582 VKIIGTYL 8 Unmodified _VKIIGTYL_ 0 0 0 REV__L1MB4_dup2816|chr6:4823726-4824774:-|1.5859866928466246|0.0097022727584265|7.35|151.0|10|1|sense REV__L1MB4_dup2816|chr6:4823726-4824774:-|1.5859866928466246|0.0097022727584265|7.35|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 453.7847595214844 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 50.136 1 53.479 52.979 53.979 3.3431 0 0 0 0.40604 1 10994 10994 2.5775 0 1 + 48240 25954 30435 30449 55686 55686 0.10204733942305211 VKIKGKEKP 9 Unmodified _VKIKGKEKP_ 0 0 0 REV__ENSG00000131711|ENST00000296755|MAP1B REV__ENSG00000131711|ENST00000296755|MAP1B MSMS UPN48_class_I_Rep_1 5 514.2286987304688 2 513.837134 1025.65972 NaN NaN NaN NaN NaN NaN NaN 28.713 1 32.27 31.77 32.77 3.5571 0 0 0 0.40098 1 3883 3883 0.45834 0 1 + 48241 18985 30436 30450 55687 55687 0.14791185645049154 VKIKIILAW 9 Unmodified _VKIKIILAW_ 0 0 0 L1M5_dup40529|chr12:118323097-118323483:+|1.782214483239663|0.0044066625309239|8.66|151.0|20|2|anti-sense L1M5_dup40529|chr12:118323097-118323483:+|1.782214483239663|0.0044066625309239|8.66|151.0|20|2|anti-sense L1M5_dup40529|chr12:118323097-118323483:+|1.782214483239663|0.0044066625309239|8.66|151.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 542.3662719726562 2 542.36807 1082.72159 NaN NaN NaN NaN NaN NaN NaN 43.876 1 43.876 43.376 44.376 0 0 0 0 0.40038 1 8796 8796 0.6015 0 1 48242 9161 30437 30451 55688 55688 0.1835353706414935 VKILCRHA 8 Unmodified _VKILCRHA_ 0 0 0 REV__ENST00000226004.7_1_17:41845534-41845828:-|nuORF REV__ENST00000226004.7_1_17:41845534-41845828:-|nuORF MSMS UPN46_class_I_Rep_3 1 470.2292175292969 2 470.281472 938.548391 NaN NaN NaN NaN NaN NaN NaN 20.376 1 20.376 19.876 20.876 0 0 0 0 0.40746 1 2108 2108 0.69038 0 1 + 48243 21488 30438 30452 55689 55689 0.0766584773609793 VKILKFMHL 9 Unmodified _VKILKFMHL_ 0 0 0 REV__L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|28|3|sense REV__L1MA10_dup1411|chr5:34169712-34170620:+|2.6182260626673184|0.3741124931177979|2.81|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 564.8510131835938 2 564.85173 1127.68891 NaN NaN NaN NaN NaN NaN NaN 98.544 1 98.544 98.044 99.044 0 0 0 0 0.40038 1 23993 23993 0.6015 0.076735 1 + 48244 24816 30439 30453 55690 55690 0.13017006669679176 VKINLYKRQKK 11 Unmodified _VKINLYKRQKK_ 0 0 0 REV__LTR70_dup14|chr4:339541-341032:+|1.9122417352054148|0.1892397827647089|3.34|151.0|110|3|anti-sense REV__LTR70_dup14|chr4:339541-341032:+|1.9122417352054148|0.1892397827647089|3.34|151.0|110|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 473.3052673339844 3 473.304911 1416.8929 0.058855 2.7856E-05 1.1829 0.00055988 1.2418 0.00058774 473.3053976875279 53.939 0.424 57.523 57.387 57.811 3.5836 45 29 2 0 0 0 0.68081 1 11303 11303 0.45452 0.046251 1 163590 + 48245 31000 30440 30454 55691 55691 0.20113242364641337 VKINLYKRQKK 11 Unmodified _VKINLYKRQKK_ 0 0 0 REV__LTR70_dup14|chr4:339541-341032:+|1.9122417352054148|0.1892397827647089|3.34|151.0|110|3|anti-sense REV__LTR70_dup14|chr4:339541-341032:+|1.9122417352054148|0.1892397827647089|3.34|151.0|110|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 473.304911 1416.8929 0.12663 5.9932E-05 1.4225 0.0006733 1.5492 0.00073323 473.3055651347576 54.235 0.22419 57.749 57.61 57.834 3.5143 0.11302 0.00011737 NaN 0.45452 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 119550 + 48246 31000 30440 30454 0.20113242364641337 VKIPTAFH 8 Unmodified _VKIPTAFH_ 0 0 0 HUERS-P3-int_dup477|chr11:74869998-74873955:+|5.154033615567101|0.4737358408054967|3.44|151.0|249|3|anti-sense HUERS-P3-int_dup477|chr11:74869998-74873955:+|5.154033615567101|0.4737358408054967|3.44|151.0|249|3|anti-sense HUERS-P3-int_dup477|chr11:74869998-74873955:+|5.154033615567101|0.4737358408054967|3.44|151.0|249|3|anti-sense MSMS UPN47_class_I_Rep_3 4 456.7682189941406 2 456.76872 911.522887 NaN NaN NaN NaN NaN NaN NaN 100.71 1 104.18 103.68 104.68 3.4671 0 0 0 0.40604 1 24865 24865 2.5775 0 1 48247 8445 30441 30455 55692 55692 0.06358696485312976 VKIRFKKRP 9 Unmodified _VKIRFKKRP_ 0 0 0 REV__L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|21|1|sense REV__L1MEc_dup1698|chr1:243206433-243207950:+|1.892949942192858|0.0217627113714025|6.44|151.0|21|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3927001953125 2 586.392942 1170.77133 0.40757 0.000239 -0.6789 -0.0003981 -0.27132 -0.0001591 586.3924306672907 108.28 0.28527 111.91 111.84 112.12 3.6313 39 22 3 0 0 0 0.50088 1 26213 26213 0.52476 0 1 3613800 + 48248 28405 30442 30456 55693 55693 0.1927766479282127 VKIRNKKCAIH 11 Unmodified _VKIRNKKCAIH_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2;REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS UPN48_class_I_Rep_3 7 437.26788330078125 3 437.267691 1308.78124 0.049194 2.1511E-05 -0.1309 -5.7238E-05 -0.081705 -3.5727E-05 437.2675616375084 49.114 2.0679 52.743 51.501 53.568 3.6291 234 147 2 0 0 0 0.65674 2 9612 9612;9709 2.6312 0.37851 1 482570 + 48249 19512;19647 30443 30457 55694;55695 55694 0.13920484735899663 VKIVGEETL 9 Unmodified _VKIVGEETL_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MULTI-MSMS UPN47_class_I_Rep_1 2 494.7927551269531 2 494.289682 986.564812 0.065099 3.2178E-05 -0.24251 -0.00011987 -0.17741 -8.7693E-05 494.28941290889816 51.977 0.62991 55.571 55.271 55.9 3.5932 75 46 2 0 0 0 0.10568 2 11467 11467;11479 32.786 0 1 170920 + 48250 18368 30444 30458 55696;55697 55696 0.07099207383191697 VKIVGEETL 9 Unmodified _VKIVGEETL_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MULTI-MSMS UPN47_class_I_Rep_2 3 494.2895812988281 2 494.289682 986.564812 0.34196 0.00016903 -0.56873 -0.00028112 -0.22677 -0.00011209 494.28922064306164 52.359 0.54993 55.692 55.299 55.849 3.3332 76 43 2 0 0 0 0.074399 4 11643 11594;11643;11680;11714 39.95 0 1 234420 + 48251 18368 30444 30458 55698;55699;55700;55701 55699 0.07099207383191697 VKIVGEETL 9 Unmodified _VKIVGEETL_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MSMS UPN47_class_I_Rep_2 3 494.2893981933594 2 494.289682 986.564812 NaN NaN NaN NaN NaN NaN NaN 52.574 1 55.907 55.407 56.407 3.3332 0 0 0 0.092202 1 11735 11735 26.268 0 1 + 48252 18368 30444 30458 55702 55702 0.07099207383191697 VKIVGEETL 9 Unmodified _VKIVGEETL_ 0 0 0 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4 MULTI-MSMS UPN47_class_I_Rep_3 4 494.2897033691406 2 494.289682 986.564812 0.28282 0.00013979 -0.4929 -0.00024363 -0.21008 -0.00010384 494.28931812251807 52.46 0.50126 55.666 55.304 55.805 3.2055 70 41 2 0 0 0 0.26468 1 11684 11684 16.149 0 1 234640 + 48253 18368 30444 30458 55703 55703 0.07099207383191697 VKIVKKHRE 9 Unmodified _VKIVKKHRE_ 0 0 0 REV__MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|81|3|sense REV__MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|81|3|sense MSMS UPN48_class_I_Rep_3 7 568.73193359375 2 568.866757 1135.71896 NaN NaN NaN NaN NaN NaN NaN 30.12 1 33.834 33.334 34.334 3.7146 0 0 0 0.39518 1 4305 4305 1.8442 1.3195 1 + 48254 31570 30445 30459 55704 55704 0.1565308165922943 VKIWHRSY 8 Unmodified _VKIWHRSY_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|27|1|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|27|1|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|27|1|sense MSMS UPN48_class_I_Rep_1 5 544.8023071289062 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 19.367 1 22.905 22.405 23.405 3.5378 0 0 0 0.40625 1 1455 1455 2.3027 0.4585 1 48255 15935 30446 30460 55705 55705 0.0524057515392542 VKIYLDYL 8 Unmodified _VKIYLDYL_ 0 0 0 L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|51|1|anti-sense L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|51|1|anti-sense L1MEg_dup502|chr1:110915823-110916895:+|1.4165580194038885|0.0293741679349703|5.59|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 513.7969360351562 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 26.394 1 29.741 29.241 30.241 3.3478 0 0 0 0.40625 1 3854 3854 2.3027 0 1 48256 13391 30447 30461 55706 55706 0.06796699251162863 VKKAEALASLK 11 Unmodified _VKKAEALASLK_ 0 0 0 REV__ENST00000459751.1_1_10:13234503-13237290:+|nuORF REV__ENST00000459751.1_1_10:13234503-13237290:+|nuORF MSMS UPN47_class_I_Rep_2 3 579.352294921875 2 579.366256 1156.71796 NaN NaN NaN NaN NaN NaN NaN 109.65 1 113.18 112.68 113.68 3.5307 0 0 0 0.38417 1 26720 26720 4.897 0 1 + 48257 22419 30448 30462 55707 55707 0.14586822499632035 VKKAINDR 8 Unmodified _VKKAINDR_ 0 0 0 nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6;ENST00000484789.5_1_7:154659706-154672733:+|nuORF nc|ENSG00000130226|P42658-2|DPP6 nc|ENSG00000130226|P42658-2|DPP6 MULTI-MSMS UPN48_class_I_Rep_2 6 472.2875061035156 2 472.287808 942.561064 0.21111 9.9706E-05 -0.17302 -8.1714E-05 0.038095 1.7992E-05 472.28764798810084 86.491 0.98515 90.209 90.173 91.158 3.7171 202 137 2 0 0 0 0.82752 1 20742 20742 0.69038 0 1 1283400 48258 2646 30449 30463 55708 55708 0.08748582399982752 VKKALLFLKKM 11 Unmodified _VKKALLFLKKM_ 0 0 0 REV__HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|74|3|anti-sense REV__HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|74|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.62689208984375 3 440.292955 1317.85703 0.077414 3.4085E-05 -1.0007 -0.00044058 -0.92324 -0.0004065 440.2922029404469 57.637 1.8919 61.131 60.162 62.054 3.4942 305 144 4 0 0 0 0.68478 1 12542 12542 0.094841 0 1 870610 + 48259 23891 30450 30464 55709 55709 0.21082068863438508 VKKALLFLKKM 11 Unmodified _VKKALLFLKKM_ 0 0 0 REV__HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|74|3|anti-sense REV__HERVL-int_dup638|chr4:102745351-102746690:-|2.271539930631429|0.0190575667499422|6.9|151.0|74|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.29241943359375 3 440.292955 1317.85703 0.024226 1.0666E-05 -0.96151 -0.00042334 -0.93728 -0.00041268 440.2922697091301 55.065 2.5065 58.634 57.45 59.956 3.5694 410 171 4 0 0 0 0.68081 1 11601 11601 0.45452 0 1 1089800 + 48260 23891 30450 30464 55710 55710 0.21082068863438508 VKKDIELP 8 Unmodified _VKKDIELP_ 0 0 0 REV__ENSG00000234828|ENST00000636793|IQCM REV__ENSG00000234828|ENST00000636793|IQCM MSMS UPN47_class_I_Rep_3 4 471.2867736816406 2 471.286943 940.559333 NaN NaN NaN NaN NaN NaN NaN 22.273 1 25.622 25.122 26.122 3.3496 0 0 0 0.40625 1 2637 2637 2.3027 0 1 + 48261 21304 30451 30465 55711 55711 0.0866752859137705 VKKDKHDQ 8 Unmodified _VKKDKHDQ_ 0 0 0 REV__ENSG00000058063.16,ATP11B,chr3,+,I28.1,182897407,182898606|31|7.16|1|intron REV__ENSG00000058063.16,ATP11B,chr3,+,I28.1,182897407,182898606|31|7.16|1|intron MSMS UPN46_class_I_Rep_3 1 499.3524169921875 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 70.473 1 70.473 69.973 70.973 0 0 0 0 0.40625 1 16196 16196 2.3027 0 1 + 48262 17708 30452 30466 55712 55712 0.036836881577073655 VKKEPLAP 8 Unmodified _VKKEPLAP_ 0 0 0 REV__nc|ENSG00000143494|Q86V25-6|VASH2 REV__nc|ENSG00000143494|Q86V25-6|VASH2 MSMS UPN48_class_I_Rep_1 5 441.2822570800781 2 441.276378 880.538203 NaN NaN NaN NaN NaN NaN NaN 64.586 1 68.04 67.54 68.54 3.4541 0 0 0 0.40738 1 14633 14633 0.79363 0 1 + 48263 19451 30453 30467 55713 55713 0.09315563282507355 VKKFHALI 8 Unmodified _VKKFHALI_ 0 0 0 REV__L1MB7_dup10723|chr9:37181377-37181837:+|1.5036606618813502|0.0601629410709443|4.64|151.0|18|3|sense REV__L1MB7_dup10723|chr9:37181377-37181837:+|1.5036606618813502|0.0601629410709443|4.64|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 478.3057861328125 2 478.308013 954.601472 NaN NaN NaN NaN NaN NaN NaN 18.051 1 18.051 17.551 18.551 0 0 0 0 0.40738 1 1514 1514 0.79363 0 1 + 48264 26120 30454 30468 55714 55714 0.12235548790397388 VKKFLSFW 8 Unmodified _VKKFLSFW_ 0 0 0 MER46C_dup1958|chr12:62326425-62326732:-|2.284255571482708|0.110331566326539|4.37|151.0|22|2|anti-sense MER46C_dup1958|chr12:62326425-62326732:-|2.284255571482708|0.110331566326539|4.37|151.0|22|2|anti-sense MER46C_dup1958|chr12:62326425-62326732:-|2.284255571482708|0.110331566326539|4.37|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 527.8079223632812 2 527.807845 1053.60114 NaN NaN NaN NaN NaN NaN NaN 98.143 1 102.04 101.54 102.54 3.9022 0 0 0 0.40738 1 23255 23255 0.79363 0 1 48265 15999 30455 30469 55715 55715 0.07648129070571485 VKKGELRAE 9 Unmodified _VKKGELRAE_ 0 0 0 REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF MSMS UPN48_class_I_Rep_3 7 515.3062133789062 2 515.306198 1028.59784 NaN NaN NaN NaN NaN NaN NaN 87.792 1 91.602 91.102 92.102 3.8104 0 0 0 0.39598 1 20831 20831 1.6526 0.85899 1 + 48266 21216 30456 30470 55716 55716 0.08468834225891442 VKKGFKAR 8 Unmodified _VKKGFKAR_ 0 0 0 ENST00000568399.1_1_1:25631264-25663698:-|nuORF ENST00000568399.1_1_1:25631264-25663698:-|nuORF ENST00000568399.1_1_1:25631264-25663698:-|nuORF MSMS UPN48_class_I_Rep_3 7 467.2958984375 2 467.303262 932.59197 NaN NaN NaN NaN NaN NaN NaN 84.171 1 87.899 87.399 88.399 3.7281 0 0 0 0.40746 1 19971 19971 0.69038 0 1 48267 7503 30457 30471 55717 55717 0.12297780504889033 VKKGKPEL 8 Unmodified _VKKGKPEL_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MSMS UPN47_class_I_Rep_3 4 449.7900390625 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 86.732 1 90.112 89.612 90.612 3.3801 0 0 0 0.40746 1 21736 21736 0.69038 0 1 48268 2511 30458 30472 55718 55718 0.11187252173851903 VKKGKPELR 9 Unmodified _VKKGKPELR_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN47_class_I_Rep_1 2 527.83984375 2 527.840208 1053.66586 -0.17799 -9.3951E-05 -0.55411 -0.00029248 -0.7321 -0.00038643 527.8399020193503 13.004 0.15615 16.461 16.425 16.581 3.457 19 12 2 0 0 0 0.40701 1 220 220 7.609 3.6646 1 29221 48269 2511 30459 30473 55719 55719 0.14117703876559062 VKKGPLKRT 9 Unmodified _VKKGPLKRT_ 0 0 0 REV__L1MEh_dup409|chr2:148184313-148185387:-|1.3590548353483547|0.0280251286171436|5.6|150.0|1|1|sense REV__L1MEh_dup409|chr2:148184313-148185387:-|1.3590548353483547|0.0280251286171436|5.6|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.8433837890625 2 513.842751 1025.67095 -0.51783 -0.00026608 0.33835 0.00017386 -0.17949 -9.2227E-05 513.8429449626259 19.196 0.6809 22.547 22.111 22.792 3.3514 91 69 2 0 0 0 0.5015 1 1772 1772 0.45834 0 1 39277 + 48270 28799 30460 30474 55720 55720 0.15914007739161207 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN47_class_I_Rep_1 2 625.9339599609375 2 625.432599 1248.85064 0.5551 0.00034718 -1.0112 -0.00063245 -0.45611 -0.00028527 625.4317991627308 108.2 0.14024 111.83 111.73 111.87 3.6355 26 13 3 0 0 0 0.56543 1 26556 26556 0 0 1 3633600 48271 2915 30461 30475 55721 55721 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN47_class_I_Rep_1 2 625.431884765625 2 625.432599 1248.85064 0.55482 0.000347 -0.96574 -0.00060401 -0.41092 -0.00025701 625.4319282038017 108.25 0.26833 111.88 111.86 112.13 3.6355 49 26 2 0 0 0 0.56543 1 26662 26662 0 0 1 3065000 48272 2915 30461 30475 55722 55722 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN47_class_I_Rep_2 3 625.4327392578125 2 625.432599 1248.85064 0.63449 0.00039683 -1.0321 -0.00064551 -0.39761 -0.00024868 625.4318963737261 108.08 0.31668 111.61 111.36 111.67 3.5333 44 37 2 0 0 0 0.56543 1 26124 26124 0 0 1 6148000 48273 2915 30461 30475 55723 55723 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN47_class_I_Rep_2 3 625.431884765625 2 625.432599 1248.85064 0.63454 0.00039686 -1.2173 -0.00076133 -0.58275 -0.00036447 625.4316825485332 108.22 0.22649 111.75 111.66 111.89 3.5333 34 20 2 0 0 0 0.56543 1 26211 26211 0 0 1 3868500 48274 2915 30461 30475 55724 55724 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN47_class_I_Rep_2 3 625.4323120117188 2 625.432599 1248.85064 0.63447 0.00039682 -1.0659 -0.00066667 -0.43146 -0.00026985 625.4318195465302 108.44 0.10773 111.98 111.94 112.05 3.5333 15 9 2 0 0 0 0.56543 1 26306 26306 0 0 1 1372500 48275 2915 30461 30475 55725 55725 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN47_class_I_Rep_3 4 625.4326782226562 2 625.432599 1248.85064 0.51231 0.00032041 -0.89203 -0.00055791 -0.37972 -0.00023749 625.4320194585013 108.26 0.27481 111.8 111.65 111.93 3.5382 41 28 3 0 0 0 0.56543 1 26445 26445 0 0 1 4616800 48276 2915 30461 30475 55726 55726 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN48_class_I_Rep_1 5 625.4324951171875 2 625.432599 1248.85064 0.42743 0.00026733 -0.98805 -0.00061796 -0.56062 -0.00035063 625.4319259050395 108.42 0.15655 112.05 111.95 112.11 3.6313 24 11 3 0 0 0 0.56543 1 26238 26238 0 0 1 1119700 48277 2915 30461 30475 55727 55727 0.23617311746943415 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS UPN48_class_I_Rep_3 7 625.4323120117188 2 625.432599 1248.85064 0.59807 0.00037405 -0.84068 -0.00052579 -0.24261 -0.00015174 625.4320032129285 108.27 0.27596 111.95 111.88 112.15 3.6813 64 29 3 0 0 0 0.56543 1 25660 25660 0 0 1 5136700 48278 2915 30461 30475 55728 55728 0.23617311746943415 VKKHLHKY 8 Unmodified _VKKHLHKY_ 0 0 0 REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|50|3|sense REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|50|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8216552734375 2 526.821818 1051.62908 -0.043365 -2.2846E-05 0.085681 4.5139E-05 0.042316 2.2293E-05 526.8217238735732 24.812 0.14981 24.812 24.712 24.862 0 21 14 2 0 0 0 0.82752 1 3315 3315 2.8892 0 1 118740 + 48279 24086 30462 30476 55729 55729 0.10533452050663072 VKKHLHKY 8 Unmodified _VKKHLHKY_ 0 0 0 REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|50|3|sense REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|50|3|sense MSMS UPN46_class_I_Rep_3 1 526.8219604492188 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 31.418 1 31.418 30.918 31.918 0 0 0 0 0.40581 1 5246 5246 2.8892 0 1 + 48280 24086 30462 30476 55730 55730 0.10533452050663072 VKKIHKKGK 9 Unmodified _VKKIHKKGK_ 0 0 0 REV__L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|80|3|sense REV__L1PA10_dup3799|chr9:124608143-124610916:-|1.8071790777246497|0.0492636299381509|5.2|151.0|80|3|sense MSMS UPN46_class_I_Rep_3 1 533.2958374023438 2 533.366393 1064.71823 NaN NaN NaN NaN NaN NaN NaN 109.28 1 109.28 108.78 109.78 0 0 0 0 0.4007 1 26816 26816 0.52476 0 1 + 48281 28966 30463 30477 55731 55731 0.18846287010160268 VKKITDSSI 9 Unmodified _VKKITDSSI_ 0 0 0 REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|26|3|sense REV__L1MB7_dup2785|chr2:121498512-121499553:+|1.0498892170021834|0.0401485796381896|4.71|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 495.795654296875 2 495.795132 989.575711 NaN NaN NaN NaN NaN NaN NaN 100.16 1 103.66 103.16 104.16 3.4974 0 0 0 0.38299 1 24505 24505 4.756 0 1 + 48282 26243 30464 30478 55732 55732 0.08050609757481197 VKKKALFH 8 Unmodified _VKKKALFH_ 0 0 0 REV__Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|71|3|sense REV__Tigger1_dup10421|chr15:63781239-63783644:+|2.6165165268870942|0.0373942064609456|6.13|150.0|71|3|sense MSMS UPN47_class_I_Rep_3 4 485.81109619140625 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 114.45 1 117.95 117.45 118.45 3.4963 0 0 0 0.40738 1 28107 28107 0.79363 0 1 + 48283 32330 30465 30479 55733 55733 0.12634951164682207 VKKKGRRKKRK 11 Unmodified _VKKKGRRKKRK_ 0 0 0 REV__nc|ENSG00000131437|Q9Y496|KIF3A REV__nc|ENSG00000131437|Q9Y496|KIF3A MSMS UPN47_class_I_Rep_1 2 471.34014892578125 3 471.331794 1410.97355 NaN NaN NaN NaN NaN NaN NaN 108.34 1 111.97 111.47 112.47 3.6355 0 0 0 0.38417 1 26608 26608 0 0 1 + 48284 31979 30466 30480 55734 55734 0.28450568198218207 VKKKKEHR 8 Unmodified _VKKKKEHR_ 0 0 0 REV__nc|ENSG00000063244|P26368-2|U2AF2 REV__nc|ENSG00000063244|P26368-2|U2AF2 MSMS UPN47_class_I_Rep_2 3 526.838134765625 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 94.569 1 98.041 97.541 98.541 3.472 0 0 0 0.40604 1 23303 23303 2.5775 0.51773 1 + 48285 17731 30467 30481 55735 55735 0.13768239453634123 VKKKKKKKE 9 Unmodified _VKKKKKKKE_ 0 0 0 L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense;L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|28|2|sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.401123046875 2 572.400433 1142.78631 NaN NaN NaN NaN NaN NaN NaN 109.48 1 113.12 112.62 113.62 3.6321 0 0 0 0.40038 1 26590 26590 0.6015 0 1 48286 9898 30468 30482 55736 55736 0.22063111870147623 VKKKKKKKE 9 Unmodified _VKKKKKKKE_ 0 0 0 L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense;L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|28|2|sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.3989868164062 2 572.400433 1142.78631 NaN NaN NaN NaN NaN NaN NaN 109.6 1 113.23 112.73 113.73 3.6321 0 0 0 0.40038 1 26620 26620 0.6015 0 1 48287 9898 30468 30482 55737 55737 0.22063111870147623 VKKKKKKKE 9 Unmodified _VKKKKKKKE_ 0 0 0 L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense;L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|28|2|sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.3983764648438 2 572.400433 1142.78631 NaN NaN NaN NaN NaN NaN NaN 109.82 1 113.45 112.95 113.95 3.6326 0 0 0 0.40038 1 26675 26675 0.6015 0 1 48288 9898 30468 30482 55738 55738 0.22063111870147623 VKKKKKKKE 9 Unmodified _VKKKKKKKE_ 0 0 0 L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense;L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|28|2|sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.3984375 2 572.400433 1142.78631 NaN NaN NaN NaN NaN NaN NaN 109.94 1 113.58 113.08 114.08 3.6326 0 0 0 0.40038 1 26705 26705 0.6015 0 1 48289 9898 30468 30482 55739 55739 0.22063111870147623 VKKKKKKKE 9 Unmodified _VKKKKKKKE_ 0 0 0 L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense;L1PA14_dup2258|chr10:87274736-87276239:+|2.4951057747394847|0.1574566287846803|3.99|150.0|28|2|sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense L1MA5_dup301|chr1:246029701-246030704:+|1.034160805273036|0.0273911835189016|5.24|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.3992309570312 2 572.400433 1142.78631 NaN NaN NaN NaN NaN NaN NaN 110.27 1 113.9 113.4 114.4 3.6326 0 0 0 0.40038 1 26771 26771 0.6015 0 1 48290 9898 30468 30482 55740 55740 0.22063111870147623 VKKKKKKKKG 10 Unmodified _VKKKKKKKKG_ 0 0 0 KNOP1|p.A158Gfs*16|1|0.2|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1 KNOP1|p.A158Gfs*16|1|0.2|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant KNOP1|p.A158Gfs*16|1|0.2|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant MSMS UPN47_class_I_Rep_1 2 600.4363403320312 2 600.43735 1198.86015 NaN NaN NaN NaN NaN NaN NaN 102.29 1 106.08 105.58 106.58 3.7888 0 0 0 0.53105 1 25185 25185 0 0 1 48291 1666 30469 30483 55741 55741 0.2686708003247986 VKKKKKLMK 9 Unmodified _VKKKKKLMK_ 0 0 0 REV__L1MB8_dup13030|chr14:95491413-95492733:+|1.0915343993512123|0.0106624825864958|6.68|150.0|31|3|sense REV__L1MB8_dup13030|chr14:95491413-95492733:+|1.0915343993512123|0.0106624825864958|6.68|150.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 565.8961181640625 2 565.893929 1129.77331 NaN NaN NaN NaN NaN NaN NaN 80.587 1 84.251 83.751 84.751 3.6635 0 0 0 0.4029 1 19069 19069 0 0 1 + 48292 26365 30470 30484 55742 55742 0.21360957486422194 VKKKKRKFVK 10 Unmodified _VKKKKRKFVK_ 0 0 0 Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 645.2867431640625 2 644.950624 1287.8867 NaN NaN NaN NaN NaN NaN NaN 44.198 1 47.893 47.393 48.393 3.6951 0 0 0 0.53105 1 9166 9166 0 0 1 48293 33291 30471 30485 55743 55743 0.25426768923807685 VKKKKRKFVK 10 Unmodified _VKKKKRKFVK_ 0 0 0 Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 645.2854614257812 2 644.950624 1287.8867 NaN NaN NaN NaN NaN NaN NaN 44.299 1 47.994 47.494 48.494 3.6951 0 0 0 0.53105 1 9197 9197 0 0 1 48294 33291 30471 30485 55744 55744 0.25426768923807685 VKKKKRKFVK 10 Unmodified _VKKKKRKFVK_ 0 0 0 Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|17|3|sense MSMS UPN47_class_I_Rep_2 3 645.2857666015625 2 644.950624 1287.8867 NaN NaN NaN NaN NaN NaN NaN 44.605 1 47.961 47.461 48.461 3.3556 0 0 0 0.53105 1 9318 9318 0 0 1 48295 33291 30471 30485 55745 55745 0.25426768923807685 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN47_class_I_Rep_1 2 493.35296630859375 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 107.99 1 111.62 111.12 112.12 3.6355 0 0 0 0.40798 1 26494 26494 0 0 1 + 48296 18230 30472 30486 55746 55746 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN47_class_I_Rep_2 3 493.3536376953125 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 107.85 1 111.38 110.88 111.88 3.5345 0 0 0 0.40798 1 26111 26111 0 0 1 + 48297 18230 30472 30486 55747 55747 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_1 5 493.35333251953125 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 108.01 1 111.65 111.15 112.15 3.6313 0 0 0 0.40798 1 26091 26091 0 0 1 + 48298 18230 30472 30486 55748 55748 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_1 5 493.35333251953125 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 108.13 1 111.76 111.26 112.26 3.6313 0 0 0 0.40798 1 26136 26136 0 0 1 + 48299 18230 30472 30486 55749 55749 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_1 5 493.35333251953125 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 108.26 1 111.89 111.39 112.39 3.6313 0 0 0 0.40798 1 26184 26184 0 0 1 + 48300 18230 30472 30486 55750 55750 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_2 6 493.35308837890625 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 109.19 1 112.87 112.37 113.37 3.6715 0 0 0 0.40798 1 25982 25982 0 0 1 + 48301 18230 30472 30486 55751 55751 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_2 6 493.353515625 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 109.33 1 113 112.5 113.5 3.6715 0 0 0 0.40798 1 26024 26024 0 0 1 + 48302 18230 30472 30486 55752 55752 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 493.3532409667969 2 493.353286 984.692019 0.24636 0.00012154 -0.083049 -4.0972E-05 0.16331 8.0568E-05 493.35306907798866 109.26 0.44799 112.93 112.85 113.3 3.6751 82 61 2 0 0 0 0.82752 2 25944 25944;26011 0 0 1 2377500 + 48303 18230 30472 30486 55753;55754 55753 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_3 7 493.35345458984375 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 109.06 1 112.74 112.24 113.24 3.6751 0 0 0 0.40798 1 25882 25882 0 0 1 + 48304 18230 30472 30486 55755 55755 0.1990601783868442 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS UPN48_class_I_Rep_3 7 493.35272216796875 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 109.17 1 112.85 112.35 113.35 3.6751 0 0 0 0.40798 1 25914 25914 0 0 1 + 48305 18230 30472 30486 55756 55756 0.1990601783868442 VKKKRGRP 8 Unmodified _VKKKRGRP_ 0 0 0 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 MSMS UPN48_class_I_Rep_2 6 484.82525634765625 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 111.95 1 115.62 115.12 116.12 3.6666 0 0 0 0.40746 1 26646 26646 0.69038 0.69038 1 48306 3615 30473 30487 55757 55757 0.15520274144785162 VKKKRPPL 8 Unmodified _VKKKRPPL_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MULTI-SECPEP UPN46_class_I_Rep_3 1 482.79559326171875 2 483.334562 964.65457 0.27546 0.00013314 -1.9027 -0.00091964 -1.6272 -0.0007865 483.3335252187178 108.89 0.096123 108.89 108.83 108.92 0 7 4 2 0 0 0 0.72333 1 26649 26649 0.79363 0 1 560490 48307 3588 30474 30488 55758 55758 0.1708292657306174 VKKKRPPL 8 Unmodified _VKKKRPPL_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MULTI-SECPEP UPN47_class_I_Rep_2 3 482.7957763671875 2 483.334562 964.65457 0.40043 0.00019354 -0.67997 -0.00032865 -0.27954 -0.00013511 483.3340987130952 109.3 0.47647 112.83 112.75 113.22 3.5307 79 63 2 0 0 0 0.72333 1 26630 26630 0.79363 0 1 1486700 48308 3588 30474 30488 55759 55759 0.1708292657306174 VKKKRPPL 8 Unmodified _VKKKRPPL_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MULTI-SECPEP UPN47_class_I_Rep_3 4 482.7958984375 2 483.334562 964.65457 0.18043 8.721E-05 -0.15312 -7.4008E-05 0.027313 1.3201E-05 483.3343402842069 108.73 0.26952 112.27 112.09 112.36 3.5382 46 30 2 0 0 0 0.72333 1 26669 26669 0 0 1 6528200 48309 3588 30474 30488 55760 55760 0.1708292657306174 VKKKRPPL 8 Unmodified _VKKKRPPL_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MULTI-SECPEP UPN48_class_I_Rep_2 6 482.79571533203125 2 483.334562 964.65457 0.24334 0.00011762 -0.40475 -0.00019563 -0.16141 -7.8013E-05 483.3342270284821 108.84 0.75895 112.51 112.29 113.05 3.6746 120 88 2 0 0 0 0.72333 1 25951 25951 0.79363 0 1 6676100 48310 3588 30474 30488 55761 55761 0.1708292657306174 VKKKRPPL 8 Unmodified _VKKKRPPL_ 0 0 0 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 ENSG00000151461|ENST00000357604|UPF2 MULTI-SECPEP UPN48_class_I_Rep_3 7 482.79595947265625 2 483.334562 964.65457 0.22762 0.00011002 -0.41585 -0.000201 -0.18823 -9.0978E-05 483.3342293611528 108.65 0.61858 112.32 112.17 112.79 3.6751 100 70 2 0 0 0 0.72333 1 25751 25751 0 0 1 11455000 48311 3588 30474 30488 55762 55762 0.1708292657306174 VKKKSQRP 8 Unmodified _VKKKSQRP_ 0 0 0 REV__ENSG00000115423|ENST00000389394|DNAH6 REV__ENSG00000115423|ENST00000389394|DNAH6 MSMS UPN48_class_I_Rep_3 7 485.8116149902344 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 66.834 1 70.342 69.842 70.842 3.5077 0 0 0 0.40746 1 15211 15211 0.69038 0.088878 1 + 48312 18562 30475 30489 55763 55763 0.12232861670986495 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3843994140625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 27.956 1 27.956 27.456 28.456 0 0 0 0 0.4029 1 4224 4224 0 0 1 + 48313 27522 30476 30490 55764 55764 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3845825195312 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 33.401 1 33.401 32.901 33.901 0 0 0 0 0.4029 1 5837 5837 0 0 1 + 48314 27522 30476 30490 55765 55765 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3707885742188 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 110.66 1 110.66 110.16 111.16 0 0 0 0 0.4029 1 27259 27259 0 0 1 + 48315 27522 30476 30490 55766 55766 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3851318359375 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.31 1 111.31 110.81 111.81 0 0 0 0 0.4029 1 27441 27441 0 0 1 + 48316 27522 30476 30490 55767 55767 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3845825195312 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.69 1 111.69 111.19 112.19 0 0 0 0 0.4029 1 27547 27547 0 0 1 + 48317 27522 30476 30490 55768 55768 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3847045898438 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.35 1 113.35 112.85 113.85 0 0 0 0 0.4029 1 27997 27997 0 0 1 + 48318 27522 30476 30490 55769 55769 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.385009765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 115.12 1 115.12 114.62 115.62 0 0 0 0 0.4029 1 28472 28472 0 0 1 + 48319 27522 30476 30490 55770 55770 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 558.3847045898438 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 116.02 1 116.02 115.52 116.52 0 0 0 0 0.4029 1 28708 28708 0 0 1 + 48320 27522 30476 30490 55771 55771 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 558.3851928710938 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.71 1 117.28 116.78 117.78 3.572 0 0 0 0.4029 1 28071 28071 0 0 1 + 48321 27522 30476 30490 55772 55772 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 558.2379150390625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 114.39 1 117.97 117.47 118.47 3.5809 0 0 0 0.4029 1 28265 28265 0 0 1 + 48322 27522 30476 30490 55773 55773 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 558.3848876953125 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 114.53 1 118.11 117.61 118.61 3.5809 0 0 0 0.4029 1 28305 28305 0 0 1 + 48323 27522 30476 30490 55774 55774 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_1 2 558.73486328125 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.24 118.74 119.74 3.5943 0 0 0 0.4029 1 28619 28619 0 0 1 + 48324 27522 30476 30490 55775 55775 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.384765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 99.451 1 102.95 102.45 103.45 3.4974 0 0 0 0.4029 1 24346 24346 0 0 1 + 48325 27522 30476 30490 55776 55776 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.385009765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 110.73 1 114.26 113.76 114.76 3.5271 0 0 0 0.4029 1 26955 26955 0 0 1 + 48326 27522 30476 30490 55777 55777 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.3850708007812 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.76 1 117.27 116.77 117.77 3.5109 0 0 0 0.4029 1 27681 27681 0 0 1 + 48327 27522 30476 30490 55778 55778 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.385009765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 115.01 1 118.52 118.02 119.02 3.5039 0 0 0 0.4029 1 28029 28029 0 0 1 + 48328 27522 30476 30490 55779 55779 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.3848266601562 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 116.38 1 119.88 119.38 120.38 3.4965 0 0 0 0.4029 1 28411 28411 0 0 1 + 48329 27522 30476 30490 55780 55780 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.1943359375 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 117.84 1 121.32 120.82 121.82 3.4822 0 0 0 0.4029 1 28816 28816 0 0 1 + 48330 27522 30476 30490 55781 55781 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 558.7361450195312 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 118.15 1 121.64 121.14 122.14 3.4822 0 0 0 0.4029 1 28900 28900 0 0 1 + 48331 27522 30476 30490 55782 55782 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.3844604492188 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.06 1 114.59 114.09 115.09 3.529 0 0 0 0.4029 1 27249 27249 0 0 1 + 48332 27522 30476 30490 55783 55783 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.3840942382812 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 112.4 1 115.91 115.41 116.41 3.5098 0 0 0 0.4029 1 27591 27591 0 0 1 + 48333 27522 30476 30490 55784 55784 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.3856811523438 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 114.56 1 118.04 117.54 118.54 3.4802 0 0 0 0.4029 1 28137 28137 0 0 1 + 48334 27522 30476 30490 55785 55785 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.1875 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 115.51 1 118.99 118.49 119.49 3.4802 0 0 0 0.4029 1 28408 28408 0 0 1 + 48335 27522 30476 30490 55786 55786 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.69580078125 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 116.03 1 119.49 118.99 119.99 3.462 0 0 0 0.4029 1 28543 28543 0 0 1 + 48336 27522 30476 30490 55787 55787 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.3848266601562 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 117.54 1 120.98 120.48 121.48 3.4425 0 0 0 0.4029 1 28962 28962 0 0 1 + 48337 27522 30476 30490 55788 55788 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.6961059570312 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 118.11 1 121.53 121.03 122.03 3.4238 0 0 0 0.4029 1 29120 29120 0 0 1 + 48338 27522 30476 30490 55789 55789 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.1692504882812 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 118.94 1 122.35 121.85 122.85 3.4157 0 0 0 0.4029 1 29356 29356 0 0 1 + 48339 27522 30476 30490 55790 55790 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 558.384765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 119.25 1 122.66 122.16 123.16 3.4157 0 0 0 0.4029 1 29445 29445 0 0 1 + 48340 27522 30476 30490 55791 55791 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 558.384765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.01 1 114.64 114.14 115.14 3.6326 0 0 0 0.4029 1 26930 26930 0 0 1 + 48341 27522 30476 30490 55792 55792 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 558.3849487304688 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 110.75 1 114.42 113.92 114.92 3.669 0 0 0 0.4029 1 26348 26348 0 0 1 + 48342 27522 30476 30490 55793 55793 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 558.3853759765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.88 1 115.54 115.04 116.04 3.6666 0 0 0 0.4029 1 26626 26626 0 0 1 + 48343 27522 30476 30490 55794 55794 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 558.2376098632812 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 112.81 1 116.47 115.97 116.97 3.6648 0 0 0 0.4029 1 26893 26893 0 0 1 + 48344 27522 30476 30490 55795 55795 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 558.3844604492188 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.65 1 117.32 116.82 117.82 3.663 0 0 0 0.4029 1 27132 27132 0 0 1 + 48345 27522 30476 30490 55796 55796 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 558.384521484375 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 113.79 1 117.45 116.95 117.95 3.663 0 0 0 0.4029 1 27170 27170 0 0 1 + 48346 27522 30476 30490 55797 55797 0.20222538836060266 VKKKTKKQK 9 Unmodified _VKKKTKKQK_ 0 0 0 REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense REV__L1MDa_dup3632|chr9:96885054-96885793:+|1.191955505785291|0.2841803345725288|2.07|151.0|15|2|sense MSMS UPN48_class_I_Rep_3 7 558.3851928710938 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 110.84 1 114.5 114 115 3.6654 0 0 0 0.4029 1 26296 26296 0 0 1 + 48347 27522 30476 30490 55798 55798 0.20222538836060266 VKKLEWMHTL 10 Unmodified _VKKLEWMHTL_ 0 0 0 REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|14|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 642.3616333007812 2 642.860283 1283.70601 0.50064 0.00032184 0.80174 0.00051541 1.3024 0.00083724 643.363150463413 104.36 0.36363 108.06 108.01 108.38 3.6991 202 52 6 0 0 0 0.84575 1 24711 24711 3.5965 0.60125 1 105570000 + 48348 25174 30477 30491 55799 55799 0.07550882484815702 VKKLKKKAA 9 Unmodified _VKKLKKKAA_ 0 0 0 REV__nc|ENSG00000280987|P43243-2|MATR3 REV__nc|ENSG00000280987|P43243-2|MATR3 MSMS UPN46_class_I_Rep_3 1 507.3613586425781 2 507.363319 1012.71209 NaN NaN NaN NaN NaN NaN NaN 82.586 1 82.586 82.086 83.086 0 0 0 0 0.4029 1 19571 19571 0 0 1 + 48349 17595 30478 30492 55800 55800 0.20623768778636986 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 525.3632202148438 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 24.685 1 24.685 24.185 25.185 0 0 0 0 0.4029 1 3278 3278 0 0 1 + 48350 28083 30479 30493 55801 55801 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 525.3241577148438 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 29.959 1 29.959 29.459 30.459 0 0 0 0 0.4029 1 4813 4813 0 0 1 + 48351 28083 30479 30493 55802 55802 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 525.2601928710938 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 119.33 1 119.33 118.83 119.83 0 0 0 0 0.4029 1 29657 29657 0 0 1 + 48352 28083 30479 30493 55803 55803 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 525.3632202148438 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 59.272 1 62.545 62.045 63.045 3.2731 0 0 0 0.4029 1 13784 13784 0 0 1 + 48353 28083 30479 30493 55804 55804 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_2 3 525.3628540039062 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 72.643 1 75.94 75.44 76.44 3.2971 0 0 0 0.4029 1 17818 17818 0 0 1 + 48354 28083 30479 30493 55805 55805 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 525.3630981445312 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 65.199 1 68.378 67.878 68.878 3.1795 0 0 0 0.4029 1 15644 15644 0 0 1 + 48355 28083 30479 30493 55806 55806 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 525.3626708984375 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 114.67 1 118.15 117.65 118.65 3.4802 0 0 0 0.4029 1 28169 28169 0 0 1 + 48356 28083 30479 30493 55807 55807 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 525.36279296875 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 116.63 1 120.09 119.59 120.59 3.462 0 0 0 0.4029 1 28705 28705 0 0 1 + 48357 28083 30479 30493 55808 55808 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_1 5 525.36279296875 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 111.38 1 115.01 114.51 115.51 3.6326 0 0 0 0.4029 1 27020 27020 0 0 1 + 48358 28083 30479 30493 55809 55809 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 525.3638916015625 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 87.33 1 91.058 90.558 91.558 3.7279 0 0 0 0.4029 1 20778 20778 0 0 1 + 48359 28083 30479 30493 55810 55810 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 525.363037109375 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 111.84 1 115.51 115.01 116.01 3.6666 0 0 0 0.4029 1 26617 26617 0 0 1 + 48360 28083 30479 30493 55811 55811 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 525.3637084960938 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 112.9 1 116.57 116.07 117.07 3.6648 0 0 0 0.4029 1 26918 26918 0 0 1 + 48361 28083 30479 30493 55812 55812 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 525.3633422851562 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 112.98 1 116.64 116.14 117.14 3.6648 0 0 0 0.4029 1 26941 26941 0 0 1 + 48362 28083 30479 30493 55813 55813 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 525.3649291992188 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 113.06 1 116.72 116.22 117.22 3.6648 0 0 0 0.4029 1 26965 26965 0 0 1 + 48363 28083 30479 30493 55814 55814 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3633422851562 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 66.873 1 70.381 69.881 70.881 3.5077 0 0 0 0.4029 1 15223 15223 0 0 1 + 48364 28083 30479 30493 55815 55815 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3632202148438 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 67.815 1 71.323 70.823 71.823 3.5077 0 0 0 0.4029 1 15509 15509 0 0 1 + 48365 28083 30479 30493 55816 55816 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3637084960938 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 72.126 1 75.652 75.152 76.152 3.5266 0 0 0 0.4029 1 16793 16793 0 0 1 + 48366 28083 30479 30493 55817 55817 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3631591796875 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 72.429 1 75.955 75.455 76.455 3.5266 0 0 0 0.4029 1 16881 16881 0 0 1 + 48367 28083 30479 30493 55818 55818 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3630981445312 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 73.063 1 76.601 76.101 77.101 3.5373 0 0 0 0.4029 1 17075 17075 0 0 1 + 48368 28083 30479 30493 55819 55819 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3633422851562 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 73.276 1 76.813 76.313 77.313 3.5373 0 0 0 0.4029 1 17136 17136 0 0 1 + 48369 28083 30479 30493 55820 55820 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.363525390625 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 73.426 1 76.963 76.463 77.463 3.5373 0 0 0 0.4029 1 17178 17178 0 0 1 + 48370 28083 30479 30493 55821 55821 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.363525390625 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 76.187 1 79.77 79.27 80.27 3.5831 0 0 0 0.4029 1 17937 17937 0 0 1 + 48371 28083 30479 30493 55822 55822 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3629760742188 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 77.079 1 80.68 80.18 81.18 3.6016 0 0 0 0.4029 1 18186 18186 0 0 1 + 48372 28083 30479 30493 55823 55823 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3632202148438 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 77.58 1 81.182 80.682 81.682 3.6016 0 0 0 0.4029 1 18334 18334 0 0 1 + 48373 28083 30479 30493 55824 55824 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3628540039062 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 78.145 1 81.766 81.266 82.266 3.6216 0 0 0 0.4029 1 18493 18493 0 0 1 + 48374 28083 30479 30493 55825 55825 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.3637084960938 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 82.324 1 86.031 85.531 86.531 3.7066 0 0 0 0.4029 1 19509 19509 0 0 1 + 48375 28083 30479 30493 55826 55826 0.1896776877861157 VKKLLAHIK 9 Unmodified _VKKLLAHIK_ 0 0 0 REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense REV__L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|20|2|sense MSMS UPN48_class_I_Rep_3 7 525.363037109375 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.38 114.88 115.88 3.6614 0 0 0 0.4029 1 26524 26524 0 0 1 + 48376 28083 30479 30493 55827 55827 0.1896776877861157 VKKLRHVH 8 Unmodified _VKKLRHVH_ 0 0 0 REV__L1MB2_dup1708|chr3:187060993-187062574:+|1.857870125906046|0.2549891750588312|2.87|151.0|44|3|sense REV__L1MB2_dup1708|chr3:187060993-187062574:+|1.857870125906046|0.2549891750588312|2.87|151.0|44|3|sense MSMS UPN47_class_I_Rep_2 3 508.8274841308594 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 87.841 1 91.288 90.788 91.788 3.4471 0 0 0 0.40746 1 21838 21838 0.69038 0 1 + 48377 25707 30480 30494 55828 55828 0.1331227414478917 VKKLVLPLN 9 Unmodified _VKKLVLPLN_ 0 0 0 REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF MSMS UPN47_class_I_Rep_1 2 512.3500366210938 2 512.349877 1022.6852 NaN NaN NaN NaN NaN NaN NaN 79.171 1 82.616 82.116 83.116 3.4456 0 0 0 0.4007 1 19715 19715 0.52476 0 1 + 48378 18534 30481 30495 55829 55829 0.1747666016747189 VKKMWLLFL 9 Unmodified _VKKMWLLFL_ 0 0 0 Tigger1_dup11903|chr21:43893111-43894066:-|1.3036498215440622|0.0115753850952845|6.82|150.0|51|3|anti-sense Tigger1_dup11903|chr21:43893111-43894066:-|1.3036498215440622|0.0115753850952845|6.82|150.0|51|3|anti-sense Tigger1_dup11903|chr21:43893111-43894066:-|1.3036498215440622|0.0115753850952845|6.82|150.0|51|3|anti-sense MSMS UPN48_class_I_Rep_1 5 589.3614501953125 2 589.36193 1176.70931 NaN NaN NaN NaN NaN NaN NaN 102.63 1 106.25 105.75 106.75 3.6164 0 0 0 0.4007 1 24742 24742 0.52476 0 1 48379 33027 30482 30496 55830 55830 0.12802177329467668 VKKPKKAA 8 Unmodified _VKKPKKAA_ 0 0 0 REV__ENSG00000124575|ENST00000244534|H1-3 REV__ENSG00000124575|ENST00000244534|H1-3 MSMS UPN47_class_I_Rep_1 2 435.3001708984375 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 68.257 1 71.621 71.121 72.121 3.3646 0 0 0 0.40746 1 16466 16466 0.69038 0 1 + 48380 18812 30483 30497 55831 55831 0.14627262273347696 VKKPKKAA 8 Unmodified _VKKPKKAA_ 0 0 0 REV__ENSG00000124575|ENST00000244534|H1-3 REV__ENSG00000124575|ENST00000244534|H1-3 MULTI-MSMS UPN48_class_I_Rep_1 5 435.30059814453125 2 435.300188 868.585822 -0.0065605 -2.8558E-06 -0.34616 -0.00015068 -0.35272 -0.00015354 435.3000619401708 69.047 0.2019 72.502 72.434 72.636 3.4548 17 15 2 0 0 0 0.82752 1 16003 16003 0.69038 0 1 55702 + 48381 18812 30483 30497 55832 55832 0.14627262273347696 VKKPKKAA 8 Unmodified _VKKPKKAA_ 0 0 0 REV__ENSG00000124575|ENST00000244534|H1-3 REV__ENSG00000124575|ENST00000244534|H1-3 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 435.300188 868.585822 -0.0065605 -2.8558E-06 -0.34616 -0.00015068 -0.35272 -0.00015354 435.3000619401708 69.047 0.2019 72.502 72.434 72.636 3.4548 -0.14701 -8.2355E-05 NaN 0.69038 17 15 2 NaN NaN NaN NaN 0 NaN NaN 0 55702 + 48382 18812 30483 30497 0.14627262273347696 VKKPKKAA 8 Unmodified _VKKPKKAA_ 0 0 0 REV__ENSG00000124575|ENST00000244534|H1-3 REV__ENSG00000124575|ENST00000244534|H1-3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 435.300188 868.585822 0.10346 4.5036E-05 -0.1578 -6.869E-05 -0.054338 -2.3653E-05 435.30011954692753 69.274 0.092285 72.796 72.736 72.829 3.5216 0.14701 8.163E-05 NaN 0.69038 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 52259 + 48383 18812 30483 30497 0.14627262273347696 VKKQLKLR 8 Unmodified _VKKQLKLR_ 0 0 0 REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 506.8540954589844 2 506.853119 1011.69168 0.30957 0.00015691 -0.13204 -6.6927E-05 0.17753 8.998E-05 506.8529028209351 108.77 0.58443 112.44 112.2 112.78 3.6746 120 59 3 0 0 0 0.82752 1 25785 25785 0 0 1 10612000 + 48384 21995 30484 30498 55833 55833 0.18630598118818398 VKKQQELI 8 Unmodified _VKKQQELI_ 0 0 0 REV__nc|ENSG00000114491|P11172-4|UMPS REV__nc|ENSG00000114491|P11172-4|UMPS MSMS UPN48_class_I_Rep_2 6 493.30633544921875 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 65.312 1 68.791 68.291 69.291 3.4792 0 0 0 0.40157 1 14837 14837 7.2892 0 1 + 48385 18529 30485 30499 55834 55834 0.10386619857001733 VKKRKDVLM 9 Unmodified _VKKRKDVLM_ 0 0 0 Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|42|2|sense Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|42|2|sense Tigger2_dup1946|chr11:58595947-58598465:-|1.642259804809643|0.0486057330464851|5.08|151.0|42|2|sense MSMS UPN47_class_I_Rep_2 3 558.76318359375 2 558.849719 1115.68488 NaN NaN NaN NaN NaN NaN NaN 14.966 1 18.352 17.852 18.852 3.3864 0 0 0 0.4007 1 695 695 0.52476 0.17413 1 48386 33294 30486 30500 55835 55835 0.1316691717595404 VKKRKKTK 8 Unmodified _VKKRKKTK_ 0 0 0 L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|55|3|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|69|3|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|69|3|sense MSMS UPN46_class_I_Rep_3 1 508.3582763671875 2 508.358568 1014.70258 NaN NaN NaN NaN NaN NaN NaN 61.282 1 61.282 60.782 61.782 0 0 0 0 0.40798 1 13628 13628 0 0 1 48387 14152 30487 30501 55836 55836 0.19582000493107898 VKKRKKTK 8 Unmodified _VKKRKKTK_ 0 0 0 L1PA17_dup166|chr1:145151652-145153833:-|3.383207343182193|0.206312975870617|4.04|150.0|55|3|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|69|3|sense REV__L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|69|3|sense MSMS UPN46_class_I_Rep_3 1 508.3588562011719 2 508.358568 1014.70258 NaN NaN NaN NaN NaN NaN NaN 78.457 1 78.457 77.957 78.957 0 0 0 0 0.40798 1 18376 18376 0 0 1 48388 14152 30487 30501 55837 55837 0.19582000493107898 VKKRPRYKY 9 Unmodified _VKKRPRYKY_ 0 0 0 REV__ENSG00000124766|ENST00000244745|SOX4 REV__ENSG00000124766|ENST00000244745|SOX4 MSMS UPN47_class_I_Rep_3 4 619.3809204101562 2 619.380032 1236.74551 NaN NaN NaN NaN NaN NaN NaN 110.89 1 114.41 113.91 114.91 3.529 0 0 0 0.40191 1 27204 27204 0.52476 0 1 + 48389 18817 30488 30502 55838 55838 0.136607705505412 VKKRRKKKK 9 Unmodified _VKKRRKKKK_ 0 0 0 REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF MSMS UPN48_class_I_Rep_2 6 600.3350219726562 2 599.932766 1197.85098 NaN NaN NaN NaN NaN NaN NaN 85.45 1 89.156 88.656 89.656 3.7058 0 0 0 0.4029 1 20320 20320 0 0 1 + 48390 22531 30489 30503 55839 55839 0.2599673146680743 VKKRRYRS 8 Unmodified _VKKRRYRS_ 0 0 0 REV__HAL1b_dup338|chr1:246923767-246923935:+|1.1311139320655432|0.0161783394607614|6.13|151.0|3|2|sense REV__HAL1b_dup338|chr1:246923767-246923935:+|1.1311139320655432|0.0161783394607614|6.13|151.0|3|2|sense MSMS UPN47_class_I_Rep_1 2 546.8400268554688 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 94.106 1 97.842 97.342 98.342 3.736 0 0 0 0.40753 1 23390 23390 0.6015 0 1 + 48391 23452 30490 30504 55840 55840 0.12542757685150718 VKKSKTSSLQ 10 Unmodified _VKKSKTSSLQ_ 0 0 0 REV__ENSG00000085760|ENST00000263629|MTIF2 REV__ENSG00000085760|ENST00000263629|MTIF2 MULTI-MSMS UPN46_class_I_Rep_3 1 553.3327026367188 2 553.332413 1104.65027 0.41142 0.00022765 -0.17077 -9.449E-05 0.24065 0.00013316 553.3323697681373 91.906 0.14545 91.906 91.888 92.033 0 17 14 2 0 0 0 0.56493 1 22224 22224 0.35063 0.35063 1 205410 + 48392 17958 30491 30505 55841 55841 0.10213372568841805 VKKSLTNLR 9 Unmodified _VKKSLTNLR_ 0 0 0 REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221 REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221 MSMS UPN47_class_I_Rep_1 2 529.837890625 2 529.837665 1057.66078 NaN NaN NaN NaN NaN NaN NaN 14.221 1 17.696 17.196 18.196 3.475 0 0 0 0.4029 1 516 516 0 0 1 + 48393 19959 30492 30506 55842 55842 0.1342540001389807 VKKTHTAI 8 Unmodified _VKKTHTAI_ 0 0 0 REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|56|3|sense REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|56|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 449.27874755859375 2 449.279452 896.544351 0.08713 3.9146E-05 -0.61301 -0.00027541 -0.52588 -0.00023627 449.2791255671877 49.402 0.82489 53.119 52.614 53.439 3.7175 78 54 2 0 0 0 0.82752 1 10015 10015 7.2892 0 1 182270 + 48394 30743 30493 30507 55843 55843 0.09194081514021946 VKKTHTAI 8 Unmodified _VKKTHTAI_ 0 0 0 REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|56|3|sense REV__L1PREC2_dup6475|chr14:67904684-67906803:-|1.7583301186385725|0.0300752805077886|5.87|149.0|56|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 449.279452 896.544351 0.00050253 2.2578E-07 -0.5023 -0.00022567 -0.5018 -0.00022545 449.27914722744634 49.599 0.77342 53.124 52.743 53.517 3.5246 0.0047753 -2.4323E-05 NaN 7.2892 63 49 2 NaN NaN NaN NaN 0 NaN NaN 0 157680 + 48395 30743 30493 30507 0.09194081514021946 VKKTLVLMNE 10 Unmodified _VKKTLVLMNE_ 0 0 0 REV__L1MEf_dup7964|chr11:62817412-62817811:+|1.2704434879764055|0.1903764519716481|2.74|151.0|18|3|sense REV__L1MEf_dup7964|chr11:62817412-62817811:+|1.2704434879764055|0.1903764519716481|2.74|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 587.8477172851562 2 587.846842 1173.67913 NaN NaN NaN NaN NaN NaN NaN 39.491 1 39.491 38.991 39.991 0 0 0 0 0.53105 1 7593 7593 1.4819 0 1 + 48396 28689 30494 30508 55844 55844 0.09923773873651953 VKKTSRTPL 9 Unmodified _VKKTSRTPL_ 0 0 0 REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|131|3|sense REV__L1PA7_dup8601|chrX:123648006-123654416:+|2.231666272370864|0.0662342665078715|5.07|151.0|131|3|sense MSMS UPN48_class_I_Rep_3 7 515.3250732421875 2 515.324391 1028.63423 NaN NaN NaN NaN NaN NaN NaN 102.27 1 106.05 105.55 106.55 3.776 0 0 0 0.4007 1 24170 24170 0.52476 0 1 + 48397 30176 30495 30509 55845 55845 0.12105711122626417 VKKVALVIT 9 Unmodified _VKKVALVIT_ 0 0 0 ENSG00000215018|ENST00000399429|COL28A1 ENSG00000215018|ENST00000399429|COL28A1 ENSG00000215018|ENST00000399429|COL28A1 MULTI-MSMS UPN47_class_I_Rep_2 3 485.8369140625 2 485.836603 969.658653 -0.15997 -7.7721E-05 -0.19189 -9.3228E-05 -0.35186 -0.00017095 485.836535324177 29.875 0.81159 33.367 32.992 33.803 3.4923 82 67 2 0 0 0 0.50582 1 4767 4767 0 0 1 66153 48398 5629 30496 30510 55846 55846 0.17260971276107284 VKKVKGSLMGM 11 Unmodified _VKKVKGSLMGM_ 0 0 0 L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|289|3|anti-sense L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|289|3|anti-sense L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|289|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 589.3433227539062 2 589.343412 1176.67227 0.48272 0.00028449 -0.3855 -0.00022719 0.097228 5.7301E-05 589.3430281751947 96.794 0.63557 100.57 100.24 100.87 3.7804 162 81 3 0 0 0 0.68196 1 23063 23063 0.35063 0.35063 1 264480 48399 13526 30497 30511 55847 55847 0.09100137721407009 VKKVKKKKK 9 Unmodified _VKKVKKKKK_ 0 0 0 REV__Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|20|2|sense REV__Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 557.3622436523438 2 557.413343 1112.81213 NaN NaN NaN NaN NaN NaN NaN 65.842 1 65.842 65.342 66.342 0 0 0 0 0.4029 1 14904 14904 0 0 1 + 48400 32661 30498 30512 55848 55848 0.2602400611244775 VKKVKKKLTYQ 11 Unmodified _VKKVKKKLTYQ_ 0 0 0 nc|ENSG00000066336|P17947-2|SPI1;ENSG00000066336|ENST00000378538|SPI1;ENST00000533030.1_1_11:47376780-47400013:-|nuORF nc|ENSG00000066336|P17947-2|SPI1 nc|ENSG00000066336|P17947-2|SPI1 MSMS UPN48_class_I_Rep_1 5 454.96734619140625 3 454.965895 1361.87586 NaN NaN NaN NaN NaN NaN NaN 42.907 1 46.417 45.917 46.917 3.5103 0 0 0 0.38417 1 7992 7992 1.3296 0.82369 1 48401 1020 30499 30513 55849 55849 0.2093932175887403 VKKVKLFHL 9 Unmodified _VKKVKLFHL_ 0 0 0 ENST00000476142.1_1_3:56651192-56651654:+|nuORF ENST00000476142.1_1_3:56651192-56651654:+|nuORF ENST00000476142.1_1_3:56651192-56651654:+|nuORF MSMS UPN47_class_I_Rep_3 4 556.799560546875 2 556.371144 1110.72774 NaN NaN NaN NaN NaN NaN NaN 102.87 1 106.38 105.88 106.88 3.5057 0 0 0 0.39326 1 25267 25267 2.3027 0.24298 1 48402 6963 30500 30514 55850 55850 0.17680055295681996 VKKVTEIMF 9 Unmodified _VKKVTEIMF_ 0 0 0 REV__L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|52|2|sense REV__L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 547.7439575195312 2 547.817553 1093.62055 NaN NaN NaN NaN NaN NaN NaN 117.04 1 120.53 120.03 121.03 3.4891 0 0 0 0.39428 1 28590 28590 2.0598 0 1 + 48403 25426 30501 30515 55851 55851 0.07748717299136842 VKKVTEIMF 9 Unmodified _VKKVTEIMF_ 0 0 0 REV__L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|52|2|sense REV__L1MA5A_dup482|chr2:147966042-147969434:+|2.510997568895823|0.2707390869948918|3.21|151.0|52|2|sense MSMS UPN48_class_I_Rep_2 6 547.8160400390625 2 547.817553 1093.62055 NaN NaN NaN NaN NaN NaN NaN 118.92 1 122.58 122.08 123.08 3.6652 0 0 0 0.4007 1 28525 28525 0.52476 0 1 + 48404 25426 30501 30515 55852 55852 0.07748717299136842 VKKVVLVL 8 Unmodified _VKKVVLVL_ 0 0 0 ENSG00000212127|ENST00000537503|TAS2R14 ENSG00000212127|ENST00000537503|TAS2R14 ENSG00000212127|ENST00000537503|TAS2R14 MULTI-MSMS UPN46_class_I_Rep_3 1 449.3283386230469 2 449.328414 896.642274 0.18335 8.2387E-05 -1.5124 -0.00067955 -1.329 -0.00059717 449.3276352073077 108.82 0.16773 108.82 108.75 108.92 0 31 13 4 0 0 0 0.82752 1 26639 26639 0.69038 0 1 6560600 48405 5577 30502 30516 55853 55853 0.189818901100125 VKKVYTLTT 9 Unmodified _VKKVYTLTT_ 0 0 0 REV__L1MB7_dup6799|chr5:131283227-131283493:-|1.2731421091148387|0.0028927533017525|8.78|151.0|7|2|sense REV__L1MB7_dup6799|chr5:131283227-131283493:-|1.2731421091148387|0.0028927533017525|8.78|151.0|7|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8217163085938 2 526.82115 1051.62775 0.083908 4.4204E-05 1.341 0.00070647 1.4249 0.00075067 526.8217510958128 30.558 0.099831 30.558 30.477 30.576 0 9 6 2 0 0 0 0.48643 1 4989 4989 2.0598 1.2661 1 87678 + 48406 26299 30503 30517 55854 55854 0.10399773171229754 VKKYHTTKEKY 11 Unmodified _VKKYHTTKEKY_ 0 0 0 REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|30|1|sense REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|30|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 475.9356689453125 3 475.601393 1423.78235 -0.25321 -0.00012043 -0.17017 -8.0932E-05 -0.42338 -0.00020136 475.93572559435864 43.779 0.6988 47.021 46.704 47.403 3.2419 71 41 2 0 0 0 0.66974 2 9053 9053;9123 1.4551 0.24029 1 98092 + 48407 28104 30504 30518 55855;55856 55855 0.08740977585807741 VKKYHTTKEKY 11 Unmodified _VKKYHTTKEKY_ 0 0 0 REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|30|1|sense REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|30|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 475.9356689453125 3 475.601393 1423.78235 -0.25321 -0.00012043 -0.17017 -8.0932E-05 -0.42338 -0.00020136 475.93572559435864 43.779 0.6988 47.021 46.704 47.403 3.2419 71 41 2 0 0 0 22.551 1 9053 9053 1.4551 0.24029 1 98092 + 48408 28104 30504 30518 55857 55857 0.08740977585807741 VKKYHTTKEKY 11 Unmodified _VKKYHTTKEKY_ 0 0 0 REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|30|1|sense REV__L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|30|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 475.601393 1423.78235 -0.18023 -8.5719E-05 -0.21881 -0.00010407 -0.39905 -0.00018979 475.60127998447484 43.608 0.72943 46.966 46.623 47.353 3.358 0.049031 6.4716E-06 NaN 1.4551 59 42 2 NaN NaN NaN NaN 0 NaN NaN 0 85738 + 48409 28104 30504 30518 0.08740977585807741 VKLAFFHKA 9 Unmodified _VKLAFFHKA_ 0 0 0 REV__nc|ENSG00000293442|O43930|PRKY REV__nc|ENSG00000293442|O43930|PRKY MSMS UPN46_class_I_Rep_3 1 530.8165283203125 2 530.818744 1059.62294 NaN NaN NaN NaN NaN NaN NaN 22.965 1 22.965 22.465 23.465 0 0 0 0 0.39518 1 2806 2806 1.8442 1.1539 1 + 48410 20807 30505 30519 55858 55858 0.09550933819127749 VKLDRLYID 9 Unmodified _VKLDRLYID_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS UPN47_class_I_Rep_1 2 568.3316040039062 2 567.829506 1133.64446 0.08701 4.9407E-05 0.27222 0.00015458 0.35923 0.00020398 567.8296288432939 44.996 0.97458 48.696 48.284 49.258 3.6999 103 60 2 0 0 0 0.2924 1 9354 9354 14.405 1.5328 1 206830 + 48411 17945 30506 30520 55859 55859 0.08298274057165145 VKLFPMKL 8 Unmodified _VKLFPMKL_ 0 0 0 REV__L1MEd_dup7609|chr6:2332975-2333911:+|2.1194685930117387|0.079004073598528|4.75|151.0|52|2|anti-sense REV__L1MEd_dup7609|chr6:2332975-2333911:+|2.1194685930117387|0.079004073598528|4.75|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_1 5 488.30645751953125 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 61.75 1 65.218 64.718 65.718 3.4678 0 0 0 0.40625 1 13765 13765 2.3027 0 1 + 48412 28585 30507 30521 55860 55860 0.1103795734123878 VKLFPMKL 8 Unmodified _VKLFPMKL_ 0 0 0 REV__L1MEd_dup7609|chr6:2332975-2333911:+|2.1194685930117387|0.079004073598528|4.75|151.0|52|2|anti-sense REV__L1MEd_dup7609|chr6:2332975-2333911:+|2.1194685930117387|0.079004073598528|4.75|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_1 5 488.3063659667969 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 63.358 1 66.816 66.316 67.316 3.4578 0 0 0 0.40625 1 14257 14257 2.3027 0 1 + 48413 28585 30507 30521 55861 55861 0.1103795734123878 VKLFPMKL 8 Unmodified _VKLFPMKL_ 0 0 0 REV__L1MEd_dup7609|chr6:2332975-2333911:+|2.1194685930117387|0.079004073598528|4.75|151.0|52|2|anti-sense REV__L1MEd_dup7609|chr6:2332975-2333911:+|2.1194685930117387|0.079004073598528|4.75|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_1 5 488.3062438964844 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 63.623 1 67.081 66.581 67.581 3.4578 0 0 0 0.4044 1 14337 14337 4.756 0 1 + 48414 28585 30507 30521 55862 55862 0.1103795734123878 VKLFYLVNRL 10 Unmodified _VKLFYLVNRL_ 0 0 0 REV__L1MB7_dup7212|chr5:180033725-180034617:-|1.293623728641526|0.0065649391014198|7.62|151.0|55|2|anti-sense REV__L1MB7_dup7212|chr5:180033725-180034617:-|1.293623728641526|0.0065649391014198|7.62|151.0|55|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 632.3621215820312 2 632.892441 1263.77033 0.51329 0.00032486 -0.18628 -0.0001179 0.32701 0.00020696 633.3934630142847 98.893 0.22298 102.33 102.26 102.48 3.4328 40 33 2 0 0 0 0.84575 1 24475 24475 1.6526 0.17072 1 498510 + 48415 26304 30508 30522 55863 55863 0.14899405633263996 VKLGRSRD 8 Unmodified _VKLGRSRD_ 0 0 0 REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.7770080566406 2 465.777608 929.540663 0.22785 0.00010613 -0.31535 -0.00014688 -0.087495 -4.0753E-05 465.77733147511805 88.09 0.16341 88.09 88.047 88.21 0 14 12 2 0 0 0 0.82752 1 21158 21158 0.6015 0 1 167370 + 48416 27947 30509 30523 55864 55864 0.07307411740168845 VKLGRSRD 8 Unmodified _VKLGRSRD_ 0 0 0 REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 465.777608 929.540663 0.15621 7.2758E-05 0.00075245 3.5047E-07 0.15696 7.3109E-05 465.7774256211957 84.5 0.1467 88.066 87.974 88.121 3.5655 0.068863 4.508E-05 NaN 0.6015 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 74268 + 48417 27947 30509 30523 0.07307411740168845 VKLGRSRD 8 Unmodified _VKLGRSRD_ 0 0 0 REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 465.777608 929.540663 0.1141 5.3144E-05 0.18237 8.4943E-05 0.29647 0.00013809 465.77761562120605 84.522 0.080528 87.945 87.901 87.982 3.4232 -0.051781 0.00021427 NaN 0.6015 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 52070 + 48418 27947 30509 30523 0.07307411740168845 VKLGRSRD 8 Unmodified _VKLGRSRD_ 0 0 0 REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 465.777608 929.540663 0.19212 8.9486E-05 -0.076873 -3.5806E-05 0.11525 5.368E-05 465.7774688951553 84.163 0.15406 87.857 87.789 87.943 3.6937 -0.13997 -2.7232E-05 NaN 0.6015 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 149040 + 48419 27947 30509 30523 0.07307411740168845 VKLGRSRD 8 Unmodified _VKLGRSRD_ 0 0 0 REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense REV__L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|1|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 465.777608 929.540663 0.221 0.00010294 -0.16325 -7.6036E-05 0.057756 2.6901E-05 465.7774155370419 84.299 0.15311 88.027 87.986 88.139 3.7281 0.030273 -0.00010769 NaN 0.6015 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 173190 + 48420 27947 30509 30523 0.07307411740168845 VKLHPHKN 8 Unmodified _VKLHPHKN_ 0 0 0 REV__L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|48|1|sense REV__L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|48|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.79095458984375 2 486.790518 971.566484 0.13883 6.7579E-05 -0.33162 -0.00016143 -0.1928 -9.3852E-05 486.79034258529623 34.874 0.45913 38.546 38.402 38.861 3.6721 88 51 2 0 0 0 0.82752 1 5621 5621 2.5775 0 1 136070 + 48421 29048 30510 30524 55865 55865 0.0795630598245225 VKLHWFFL 8 Unmodified _VKLHWFFL_ 0 0 0 REV__L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|218|3|anti-sense REV__L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|218|3|anti-sense MSMS UPN47_class_I_Rep_2 3 545.316162109375 2 545.315838 1088.61712 NaN NaN NaN NaN NaN NaN NaN 94.053 1 97.525 97.025 98.025 3.472 0 0 0 0.40581 1 23194 23194 2.8892 0 1 + 48422 27583 30511 30525 55866 55866 0.07635835307473826 VKLIIAPG 8 Unmodified _VKLIIAPG_ 0 0 0 nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 MSMS UPN46_class_I_Rep_3 1 405.7331848144531 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 77.923 1 77.923 77.423 78.423 0 0 0 0 0.40738 1 18233 18233 0.79363 0 1 48423 4163 30512 30526 55867 55867 0.12508768633460932 VKLIYNSCMY 10 Unmodified _VKLIYNSCMY_ 0 0 0 REV__L1ME2_dup8619|chr11:43468900-43469825:+|4.985731433221369|0.3192652694929977|3.96|151.0|23|3|sense REV__L1ME2_dup8619|chr11:43468900-43469825:+|4.985731433221369|0.3192652694929977|3.96|151.0|23|3|sense MSMS UPN48_class_I_Rep_2 6 617.3060302734375 2 617.303952 1232.59335 NaN NaN NaN NaN NaN NaN NaN 32.138 1 35.78 35.28 36.28 3.6423 0 0 0 0.53105 1 4928 4928 1.4819 0.41044 1 + 48424 27893 30513 30527 55868 55868 -0.013641343035260434 VKLKKEGY 8 Unmodified _VKLKKEGY_ 0 0 0 ENST00000510650.5_1_5:42806855-42811951:-|nuORF;ENST00000512980.5_1_5:42806855-42808275:-|nuORF;ENST00000514985.5_1_5:42801070-42808275:-|nuORF;ENSG00000250722|ENST00000514985|SELENOP ENST00000510650.5_1_5:42806855-42811951:-|nuORF ENST00000510650.5_1_5:42806855-42811951:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 482.7954406738281 2 482.794935 963.575317 0.03991 1.9268E-05 1.2361 0.00059679 1.276 0.00061606 482.79546794438784 31.192 0.15073 31.192 31.175 31.326 0 11 9 2 0 0 0 0.82752 1 5210 5210 6.3541 1.1234 1 286540 48425 5741 30514 30528 55869 55869 0.09207234828272703 VKLKKLLR 8 Unmodified _VKLKKLLR_ 0 0 0 REV__L1MA8_dup9867|chr17:64011750-64012179:+|1.0884462167608937|0.0524837022813438|4.37|150.0|3|1|sense REV__L1MA8_dup9867|chr17:64011750-64012179:+|1.0884462167608937|0.0524837022813438|4.37|150.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 499.36676025390625 2 499.365862 996.717171 NaN NaN NaN NaN NaN NaN NaN 71.394 1 74.684 74.184 75.184 3.2899 0 0 0 0.40738 1 17446 17446 0.79363 0 1 + 48426 25580 30515 30529 55870 55870 0.21868072641279923 VKLKLIYQVI 10 Unmodified _VKLKLIYQVI_ 0 0 0 REV__L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|70|1|sense REV__L1PA3_dup8525|chr12:46617498-46623643:+|3.121940201678694|0.2748822113322564|3.51|151.0|70|1|sense MSMS UPN46_class_I_Rep_3 1 608.9073486328125 2 608.905017 1215.79548 NaN NaN NaN NaN NaN NaN NaN 109.49 1 109.49 108.99 109.99 0 0 0 0 0.53105 1 26893 26893 3.2813 0.54611 1 + 48427 29574 30516 30530 55871 55871 0.19621460435837434 VKLLENYLI 9 Unmodified _VKLLENYLI_ 0 0 0 ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 552.8364868164062 2 552.8368 1103.65905 0.45741 0.00025287 -0.47943 -0.00026505 -0.022021 -1.2174E-05 552.8364651979159 61.354 1.0369 64.62 64.292 65.329 3.2654 145 71 3 0 0 0 0.43153 1 14533 14533 6.2058 0 1 481630 48428 4821 30517 30531 55872 55872 0.11136346205330483 VKLLIILIE 9 Unmodified _VKLLIILIE_ 0 0 0 Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_2 3 527.839599609375 2 527.367736 1052.72092 NaN NaN NaN NaN NaN NaN NaN 93.232 1 96.7 96.2 97.2 3.4687 0 0 0 0.40038 1 23016 23016 0.6015 0 1 48429 33470 30518 30532 55873 55873 0.19666697624438712 VKLLIILIE 9 Unmodified _VKLLIILIE_ 0 0 0 Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_2 3 527.8401489257812 2 527.367736 1052.72092 NaN NaN NaN NaN NaN NaN NaN 96.545 1 100.02 99.524 100.52 3.4791 0 0 0 0.40038 1 23719 23719 0.6015 0 1 48430 33470 30518 30532 55874 55874 0.19666697624438712 VKLLIILIE 9 Unmodified _VKLLIILIE_ 0 0 0 Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_3 4 527.8395385742188 2 527.367736 1052.72092 NaN NaN NaN NaN NaN NaN NaN 91.341 1 94.742 94.242 95.242 3.401 0 0 0 0.40038 1 22850 22850 0.6015 0 1 48431 33470 30518 30532 55875 55875 0.19666697624438712 VKLLIILIE 9 Unmodified _VKLLIILIE_ 0 0 0 Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_3 4 527.8410034179688 2 527.367736 1052.72092 NaN NaN NaN NaN NaN NaN NaN 92.919 1 96.324 95.824 96.824 3.4052 0 0 0 0.40038 1 23183 23183 0.6015 0 1 48432 33470 30518 30532 55876 55876 0.19666697624438712 VKLLILLAL 9 Unmodified _VKLLILLAL_ 0 0 0 REV__L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|80|1|anti-sense REV__L1MA6_dup5238|chr21:5566903-5568429:-|1.4561309262518367|0.0071520091108947|7.67|148.0|80|1|anti-sense MSMS UPN48_class_I_Rep_3 7 498.7375793457031 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 62.442 1 65.952 65.452 66.452 3.5104 0 0 0 0.40038 1 13878 13878 0.6015 0 1 + 48433 25475 30519 30533 55877 55877 0.21787018832628746 VKLLKFLN 8 Unmodified _VKLLKFLN_ 0 0 0 REV__L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|107|2|anti-sense REV__L1M4b_dup2854|chr10:30995062-30997229:+|1.222516625571188|0.043233665068549|4.82|151.0|107|2|anti-sense MSMS UPN46_class_I_Rep_3 1 487.82208251953125 2 487.823495 973.632438 NaN NaN NaN NaN NaN NaN NaN 15.622 1 15.622 15.122 16.122 0 0 0 0 0.40746 1 928 928 0.69038 0 1 + 48434 24536 30520 30534 55878 55878 0.14456702104632768 VKLLLKNE 8 Unmodified _VKLLLKNE_ 0 0 0 L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|48|3|sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|48|3|sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|48|3|sense MSMS UPN48_class_I_Rep_2 6 478.81036376953125 2 478.810585 955.606617 NaN NaN NaN NaN NaN NaN NaN 30.867 1 34.502 34.002 35.002 3.6351 0 0 0 0.40746 1 4578 4578 0.69038 0 1 48435 8671 30521 30535 55879 55879 0.12703807862362737 VKLLLPNFFF 10 Unmodified _VKLLLPNFFF_ 0 0 0 L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|102|3|anti-sense L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|102|3|anti-sense L1MC4a_dup8371|chr15:76460849-76462385:-|2.345434131648749|0.0330547605584441|6.15|151.0|102|3|anti-sense MSMS UPN47_class_I_Rep_1 2 619.3714599609375 2 619.37081 1236.72707 NaN NaN NaN NaN NaN NaN NaN 102.71 1 106.49 105.99 106.99 3.7788 0 0 0 0.53105 1 25272 25272 0.40072 0 1 48436 11623 30522 30536 55880 55880 0.11817215855967333 VKLMIIYV 8 Unmodified _VKLMIIYV_ 0 0 0 ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|94|2|anti-sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|94|2|anti-sense ERVL-B4-int_dup198|chr1:173396522-173398412:+|1.0290215196440593|0.0283338577286998|5.18|151.0|94|2|anti-sense MSMS UPN48_class_I_Rep_2 6 489.80670166015625 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 115.73 1 119.39 118.89 119.89 3.6607 0 0 0 0.40738 1 27707 27707 0.79363 0 1 48437 7722 30523 30537 55881 55881 0.10866537621382122 VKLNGVVL 8 Unmodified _VKLNGVVL_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MSMS UPN47_class_I_Rep_2 3 421.2786865234375 2 421.278921 840.543289 NaN NaN NaN NaN NaN NaN NaN 44.96 1 48.315 47.815 48.815 3.3556 0 0 0 0.4044 1 9428 9428 4.756 0 1 48438 2047 30524 30538 55882 55882 0.11663867145136919 VKLNGVVL 8 Unmodified _VKLNGVVL_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MULTI-MSMS UPN47_class_I_Rep_3 4 421.7802734375 2 421.278921 840.543289 -0.81418 -0.000343 0.41327 0.0001741 -0.40091 -0.0001689 421.27903023961204 45.118 0.7225 48.362 48.089 48.812 3.2441 53 48 2 0 0 0 0.82752 1 9506 9506 13.508 0 1 84409 48439 2047 30524 30538 55883 55883 0.11663867145136919 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.30914306640625 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 44.558 1 48.253 47.753 48.753 3.6951 0 0 0 0.40604 1 9275 9275 2.5775 0 1 48440 8955 30525 30539 55884 55884 0.12585013213322327 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.3089599609375 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 43.751 1 47.261 46.761 47.761 3.5103 0 0 0 0.40604 1 8247 8247 2.5775 0 1 48441 8955 30525 30539 55885 55885 0.12585013213322327 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_1 5 479.3089294433594 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 44.371 1 47.885 47.385 48.385 3.5132 0 0 0 0.40604 1 8438 8438 2.5775 0 1 48442 8955 30525 30539 55886 55886 0.12585013213322327 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.3088684082031 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 62.442 1 65.916 65.416 66.416 3.4738 0 0 0 0.4044 1 13955 13955 4.756 0 1 48443 8955 30525 30539 55887 55887 0.12585013213322327 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.3077087402344 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 62.855 1 66.328 65.828 66.828 3.4738 0 0 0 0.4044 1 14083 14083 4.756 0 1 48444 8955 30525 30539 55888 55888 0.12585013213322327 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_3 7 479.3094177246094 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 48.823 1 52.452 51.952 52.952 3.6291 0 0 0 0.40604 1 9735 9735 2.5775 0 1 48445 8955 30525 30539 55889 55889 0.12585013213322327 VKLPFQLL 8 Unmodified _VKLPFQLL_ 0 0 0 L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense L1M4a1_dup42|chr1:43742423-43742893:+|1.3994054975594994|0.0121712384683158|6.85|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_3 7 479.30889892578125 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 57.339 1 60.87 60.37 61.37 3.5317 0 0 0 0.40746 1 12325 12325 0.69038 0 1 48446 8955 30525 30539 55890 55890 0.12585013213322327 VKLPKGKRKKK 11 Unmodified _VKLPKGKRKKK_ 0 0 0 ENST00000465851.1_1_2:196545249-196581758:+|nuORF;ENSG00000196950.14,SLC39A10,chr2,+,I15.1,195728350,195734882|32|8.37|4|intron;ENSG00000196950|ENST00000359634|SLC39A10 ENST00000465851.1_1_2:196545249-196581758:+|nuORF ENST00000465851.1_1_2:196545249-196581758:+|nuORF MSMS UPN48_class_I_Rep_2 6 437.31060791015625 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 61.093 1 64.571 64.071 65.071 3.4785 0 0 0 0.38417 1 13544 13544 0.094841 0.094841 1 48447 5340 30526 30540 55891 55891 0.26606153952525347 VKLPLRVPK 9 Unmodified _VKLPLRVPK_ 0 0 0 REV__ENST00000454337.1_1_16:1697048-1706838:+|nuORF REV__ENST00000454337.1_1_16:1697048-1706838:+|nuORF MSMS UPN48_class_I_Rep_3 7 525.363525390625 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 70.428 1 73.947 73.447 74.447 3.5185 0 0 0 0.4007 1 16294 16294 0.52476 0 1 + 48448 17550 30527 30541 55892 55892 0.18967768778634309 VKLQLWHK 8 Unmodified _VKLQLWHK_ 0 0 0 REV__Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|85|3|anti-sense REV__Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|85|3|anti-sense MSMS UPN46_class_I_Rep_3 1 525.9403076171875 2 526.324194 1050.63383 NaN NaN NaN NaN NaN NaN NaN 63.309 1 63.309 62.809 63.809 0 0 0 0 0.40604 1 14209 14209 2.5775 0 1 + 48449 32428 30528 30542 55893 55893 0.11054336193410563 VKLSFRNER 9 Unmodified _VKLSFRNER_ 0 0 0 L1MEf_dup5079|chr7:66137687-66138256:-|1.0673890238057833|0.0197189282709782|5.76|151.0|3|1|sense L1MEf_dup5079|chr7:66137687-66138256:-|1.0673890238057833|0.0197189282709782|5.76|151.0|3|1|sense L1MEf_dup5079|chr7:66137687-66138256:-|1.0673890238057833|0.0197189282709782|5.76|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.829345703125 2 574.830372 1147.64619 0.29826 0.00017145 -1.0284 -0.00059118 -0.73018 -0.00041973 574.8296442214364 53.438 0.54348 56.965 56.755 57.299 3.5278 63 36 2 0 0 0 0.48846 1 12033 12033 1.8442 0 1 110740 48450 13288 30529 30543 55894 55894 0.07827327865788902 VKLSYVKEK 9 Unmodified _VKLSYVKEK_ 0 0 0 REV__L1MC4_dup5008|chr3:123222496-123223061:-|1.8679052340207103|0.0808559912146953|4.53|151.0|17|2|sense REV__L1MC4_dup5008|chr3:123222496-123223061:-|1.8679052340207103|0.0808559912146953|4.53|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 547.3323974609375 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 69.611 1 73.124 72.624 73.624 3.5128 0 0 0 0.3967 1 16049 16049 1.4819 0 1 + 48451 26919 30530 30544 55895 55895 0.11167462062553568 VKLTHSRRP 9 Unmodified _VKLTHSRRP_ 0 0 0 REV__ENST00000483719.1_1_3:186969190-186969460:-|nuORF REV__ENST00000483719.1_1_3:186969190-186969460:-|nuORF MSMS UPN47_class_I_Rep_1 2 547.33251953125 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 83.287 1 86.825 86.325 87.325 3.5386 0 0 0 0.3967 1 20827 20827 1.4819 0.68827 1 + 48452 22586 30531 30545 55896 55896 0.10899051448268438 VKLVIKKME 9 Unmodified _VKLVIKKME_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MSMS UPN46_class_I_Rep_3 1 544.3478393554688 2 544.34902 1086.68349 NaN NaN NaN NaN NaN NaN NaN 92.314 1 92.314 91.814 92.814 0 0 0 0 0.39598 1 22336 22336 1.6526 1.1279 1 + 48453 18570 30532 30546 55897 55897 0.14361283087191623 VKLVPLVL 8 Unmodified _VKLVPLVL_ 0 0 0 REV__L1ME2z_dup2379|chr6:37842219-37842577:-|1.3998782231308105|0.0051454271782009|8.09|151.0|14|1|anti-sense REV__L1ME2z_dup2379|chr6:37842219-37842577:-|1.3998782231308105|0.0051454271782009|8.09|151.0|14|1|anti-sense MSMS UPN48_class_I_Rep_3 7 440.8136901855469 2 440.815139 879.615725 NaN NaN NaN NaN NaN NaN NaN 109.62 1 113.29 112.79 113.79 3.67 0 0 0 0.40738 1 26040 26040 0.79363 0 1 + 48454 27911 30533 30547 55898 55898 0.1711020121869069 VKLYVQYKK 9 Unmodified _VKLYVQYKK_ 0 0 0 Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|8|2|sense Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|8|2|sense Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|8|2|sense MSMS UPN48_class_I_Rep_1 5 584.8579711914062 2 584.858067 1167.70158 NaN NaN NaN NaN NaN NaN NaN 83.702 1 87.289 86.789 87.789 3.5871 0 0 0 0.4007 1 20024 20024 0.52476 0 1 48455 453 30534 30548 55899 55899 0.12443741333549951 VKMFLTYHT 9 Unmodified _VKMFLTYHT_ 0 0 0 L1MEc_dup13981|chr12:120795246-120796093:-|1.3275256947478826|0.0864802502102937|3.94|151.0|29|3|sense L1MEc_dup13981|chr12:120795246-120796093:-|1.3275256947478826|0.0864802502102937|3.94|151.0|29|3|sense L1MEc_dup13981|chr12:120795246-120796093:-|1.3275256947478826|0.0864802502102937|3.94|151.0|29|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.2998046875 2 570.299527 1138.5845 -0.13115 -7.4795E-05 -1.5571 -0.00088799 -1.6882 -0.00096278 570.7994483559052 12.613 0.20442 12.613 12.463 12.667 0 24 22 2 0 0 0 0.49026 1 158 158 1.6526 0.96225 1 33514 48456 13019 30535 30549 55900 55900 0.02075260122273903 VKMKRKCGI 9 Unmodified _VKMKRKCGI_ 0 0 0 L1MB2_dup1470|chr3:87875942-87876784:+|1.6442666170098148|0.0088505475700905|7.54|129.0|30|3|sense L1MB2_dup1470|chr3:87875942-87876784:+|1.6442666170098148|0.0088505475700905|7.54|129.0|30|3|sense L1MB2_dup1470|chr3:87875942-87876784:+|1.6442666170098148|0.0088505475700905|7.54|129.0|30|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 531.8170166015625 2 531.817364 1061.62018 0.33202 0.00017658 -1.0355 -0.00055067 -0.70343 -0.0003741 531.8169141721938 83.912 0.21842 83.912 83.866 84.084 0 41 26 2 0 0 0 0.48846 1 19963 19963 1.8442 0.36234 1 218290 48457 10215 30536 30550 55901 55901 0.09183019098304612 VKMLLFIP 8 Unmodified _VKMLLFIP_ 0 0 0 REV__L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|163|3|anti-sense REV__L1MA2_dup6367|chr14:50250202-50253203:+|1.166536364554746|0.0958277940334625|3.61|151.0|163|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.8006896972656 2 480.801174 959.587796 0.20405 9.8108E-05 -0.46704 -0.00022455 -0.26299 -0.00012644 480.80090438244093 87.088 0.20818 90.725 90.613 90.822 3.6372 43 26 2 0 0 0 0.82752 1 21769 21769 0.79363 0.79363 1 90641 + 48458 24915 30537 30551 55902 55902 0.10638554966953961 VKMPLSPP 8 Unmodified _VKMPLSPP_ 0 0 0 ENST00000260061.9_1_11:76368725-76369013:-|nuORF ENST00000260061.9_1_11:76368725-76369013:-|nuORF ENST00000260061.9_1_11:76368725-76369013:-|nuORF MSMS UPN46_class_I_Rep_3 1 434.7522888183594 2 434.751682 867.48881 NaN NaN NaN NaN NaN NaN NaN 72.708 1 72.708 72.208 73.208 0 0 0 0 0.40625 1 16819 16819 2.3027 0 1 48459 5945 30538 30552 55903 55903 0.049765320020583204 VKMPPRKWV 9 Unmodified _VKMPPRKWV_ 0 0 0 L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|37|3|sense L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|37|3|sense L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|37|3|sense MSMS UPN48_class_I_Rep_1 5 570.8421020507812 2 570.839154 1139.66375 NaN NaN NaN NaN NaN NaN NaN 72.767 1 76.24 75.74 76.74 3.4732 0 0 0 0.39518 1 17101 17101 1.8442 0 1 48460 10294 30539 30553 55904 55904 0.09950951867085678 VKMRVLFG 8 Unmodified _VKMRVLFG_ 0 0 0 REV__L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|94|2|anti-sense REV__L1MA3_dup6246|chr11:93714549-93716498:-|3.365388834566623|0.1874210843431916|4.17|151.0|94|2|anti-sense MSMS UPN46_class_I_Rep_3 1 475.2855529785156 2 475.286223 948.557893 NaN NaN NaN NaN NaN NaN NaN 106.9 1 106.9 106.4 107.4 0 0 0 0 0.40738 1 26077 26077 0.79363 0 1 + 48461 25061 30540 30554 55905 55905 0.08155616021622336 VKMSHLFFR 9 Unmodified _VKMSHLFFR_ 0 0 0 HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|176|1|anti-sense HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|176|1|anti-sense HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|176|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.8234252929688 2 582.820961 1163.62737 NaN NaN NaN NaN NaN NaN NaN 23.179 1 26.883 26.383 27.383 3.7042 0 0 0 0.39518 1 2824 2824 1.8442 0 1 48462 8094 30541 30555 55906 55906 0.05210074970364076 VKMTILSKTI 10 Unmodified _VKMTILSKTI_ 0 0 0 L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|43|1|sense L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|43|1|sense L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|43|1|sense MSMS UPN46_class_I_Rep_3 1 567.2694091796875 2 567.35176 1132.68897 NaN NaN NaN NaN NaN NaN NaN 113.22 1 113.22 112.72 113.72 0 0 0 0 0.53105 1 27963 27963 0 0 1 48463 15150 30542 30556 55907 55907 0.12792961879040377 VKNDILFLA 9 Unmodified _VKNDILFLA_ 0 0 0 REV__L1MB7_dup15102|chr11:77759936-77760580:+|1.658714551052665|0.0284187032582374|5.87|151.0|9|2|sense REV__L1MB7_dup15102|chr11:77759936-77760580:+|1.658714551052665|0.0284187032582374|5.87|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 516.81591796875 2 516.808042 1031.60153 NaN NaN NaN NaN NaN NaN NaN 105.62 1 105.62 105.12 106.12 0 0 0 0 0.38478 1 25766 25766 4.3292 0 1 + 48464 26146 30543 30557 55908 55908 0.08699503999764602 VKNDQEAL 8 Unmodified _VKNDQEAL_ 0 0 0 L1ME4b_dup4165|chr3:108541695-108542076:+|1.341130846894625|0.186104751715826|2.85|151.0|17|3|sense L1ME4b_dup4165|chr3:108541695-108542076:+|1.341130846894625|0.186104751715826|2.85|151.0|17|3|sense L1ME4b_dup4165|chr3:108541695-108542076:+|1.341130846894625|0.186104751715826|2.85|151.0|17|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.7406311035156 2 458.740357 915.46616 0.17722 8.1297E-05 0.066856 3.0669E-05 0.24407 0.00011197 458.74037066547817 45.556 0.56451 45.556 45.243 45.808 0 85 55 2 0 0 0 0.82752 1 9205 9205 14.838 0 1 325880 48465 12930 30544 30558 55909 55909 0.005046041381433497 VKNKQSTKFE 10 Unmodified _VKNKQSTKFE_ 0 0 0 REV__AluJb_dup114013|chr19:4041437-4041733:-|1.6593893376509374|0.0278828786158961|5.9|151.0|9|3|sense REV__AluJb_dup114013|chr19:4041437-4041733:-|1.6593893376509374|0.0278828786158961|5.9|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 604.8349609375 2 604.83532 1207.65609 0.13995 8.4648E-05 0.33504 0.00020264 0.47499 0.00028729 605.3369741810337 43.536 0.3928 46.894 46.76 47.152 3.358 29 22 2 0 0 0 0.56354 1 9049 9049 1.3295 0 1 65158 + 48466 16917 30545 30559 55910 55910 0.06056471080546544 VKNKQSTKFE 10 Unmodified _VKNKQSTKFE_ 0 0 0 REV__AluJb_dup114013|chr19:4041437-4041733:-|1.6593893376509374|0.0278828786158961|5.9|151.0|9|3|sense REV__AluJb_dup114013|chr19:4041437-4041733:-|1.6593893376509374|0.0278828786158961|5.9|151.0|9|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 605.2597045898438 2 604.83532 1207.65609 0.13995 8.4648E-05 0.33504 0.00020264 0.47499 0.00028729 605.3369741810337 43.536 0.3928 46.894 46.76 47.152 3.358 29 22 2 0 0 0 0.84575 1 8958 8958 1.3295 0 1 65158 + 48467 16917 30545 30559 55911 55911 0.06056471080546544 VKNKQSTKFE 10 Unmodified _VKNKQSTKFE_ 0 0 0 REV__AluJb_dup114013|chr19:4041437-4041733:-|1.6593893376509374|0.0278828786158961|5.9|151.0|9|3|sense REV__AluJb_dup114013|chr19:4041437-4041733:-|1.6593893376509374|0.0278828786158961|5.9|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 604.8356323242188 2 604.83532 1207.65609 0.15516 9.3846E-05 0.20211 0.00012224 0.35727 0.00021609 604.8353861300602 43.699 0.41405 46.941 46.704 47.119 3.2419 30 23 2 0 0 0 0.56078 2 9071 9071;9074 3.2813 0 1 68454 + 48468 16917 30545 30559 55912;55913 55912 0.06056471080546544 VKNLERDIY 9 Unmodified _VKNLERDIY_ 0 0 0 L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|41|2|sense L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|41|2|sense L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|41|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 575.3167114257812 2 575.316763 1148.61897 0.46039 0.00026487 -0.052442 -3.0171E-05 0.40795 0.0002347 575.3167167269108 49.518 0.80506 52.745 52.468 53.273 3.2262 83 47 3 0 0 0 0.074367 1 10864 10864 39.957 0 1 186300 48469 11078 30546 30560 55914 55914 0.05060799534749094 VKNNIDVF 8 Unmodified _VKNNIDVF_ 0 0 0 nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010-3|AP2B1 MULTI-MSMS UPN47_class_I_Rep_1 2 474.7609558105469 2 474.761092 947.507631 -0.25419 -0.00012068 -0.65047 -0.00030882 -0.90466 -0.0004295 474.7609988473079 42.028 0.80206 45.707 45.293 46.095 3.6792 118 55 3 0 0 0 0.82752 1 8496 8496 11.64 0.81637 1 161400 48470 714 30547 30561 55915 55915 0.031777848974684275 VKNNIDVF 8 Unmodified _VKNNIDVF_ 0 0 0 nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010-3|AP2B1 MULTI-MSMS UPN47_class_I_Rep_2 3 475.26031494140625 2 474.761092 947.507631 -0.24277 -0.00011526 -0.8371 -0.00039742 -1.0799 -0.00051268 474.76101005530467 42.337 0.71437 45.698 45.409 46.124 3.3611 118 53 3 0 0 0 0.82752 2 8570 8570;8733 7.9102 0 1 144330 48471 714 30547 30561 55916;55917 55916 0.031777848974684275 VKNSGGIF 8 Unmodified _VKNSGGIF_ 0 0 0 L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|237|1|anti-sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|237|1|anti-sense L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|237|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 411.2286682128906 2 411.229428 820.444303 0.094834 3.8999E-05 -1.3414 -0.00055162 -1.2466 -0.00051263 411.2286918836973 107.66 0.15411 111.33 111.27 111.43 3.6724 49 18 3 0 0 0 0.82752 1 26384 26384 6.3541 3.4649 1 2121500 48472 14276 30548 30562 55918 55918 0.02689844180235923 VKNVFGVF 8 Unmodified _VKNVFGVF_ 0 0 0 L1M1_dup4109|chr7:140816834-140817718:+|1.4915878681700745|0.0280374306655713|5.73|151.0|32|1|anti-sense L1M1_dup4109|chr7:140816834-140817718:+|1.4915878681700745|0.0280374306655713|5.73|151.0|32|1|anti-sense L1M1_dup4109|chr7:140816834-140817718:+|1.4915878681700745|0.0280374306655713|5.73|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_1 5 455.25506591796875 2 455.263271 908.511988 NaN NaN NaN NaN NaN NaN NaN 107.76 1 111.39 110.89 111.89 3.6313 0 0 0 0.40581 1 25987 25987 2.8892 0 1 48473 8558 30549 30563 55919 55919 0.05407294111057581 VKNYLRLF 8 Unmodified _VKNYLRLF_ 0 0 0 MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|63|1|anti-sense;MER66-int_dup1|chr1:149683678-149685807:-|3.5901664453604702|0.4173679766776176|3.1|150.0|62|1|anti-sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|63|1|anti-sense MER66-int_dup65|chr1:145183903-145186116:+|7.916128052021855|0.4309710564149615|4.2|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_2 6 526.6513061523438 2 526.816202 1051.61785 NaN NaN NaN NaN NaN NaN NaN 71.309 1 74.86 74.36 75.36 3.5505 0 0 0 0.40604 1 16629 16629 2.5775 0 1 48474 16179 30550 30564 55920 55920 0.09410629956482808 VKPAILLDIA 10 Unmodified _VKPAILLDIA_ 0 0 0 ENST00000400532.5_1_21:27071180-27074578:+|nuORF ENST00000400532.5_1_21:27071180-27074578:+|nuORF ENST00000400532.5_1_21:27071180-27074578:+|nuORF MSMS UPN47_class_I_Rep_2 3 526.8378295898438 2 526.839342 1051.66413 NaN NaN NaN NaN NaN NaN NaN 70.214 1 73.497 72.997 73.997 3.2828 0 0 0 0.53105 1 17095 17095 1.6526 0.17072 1 48475 6594 30551 30565 55921 55921 0.1403665006796473 VKPFIAMRV 9 Unmodified _VKPFIAMRV_ 0 0 0 REV__L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|97|3|sense REV__L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|97|3|sense MSMS UPN47_class_I_Rep_3 4 530.821533203125 2 530.82043 1059.62631 NaN NaN NaN NaN NaN NaN NaN 74.822 1 78.068 77.568 78.568 3.2464 0 0 0 0.39518 1 18534 18534 1.8442 1.1539 1 + 48476 26153 30552 30566 55922 55922 0.09887860601497778 VKPHKHRQ 8 Unmodified _VKPHKHRQ_ 0 0 0 L1MA3_dup7702|chr15:44351599-44352630:+|4.469654475794719|0.1038654815763851|5.43|151.0|15|1|sense;L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|55|2|sense L1MA3_dup7702|chr15:44351599-44352630:+|4.469654475794719|0.1038654815763851|5.43|151.0|15|1|sense L1MA3_dup7702|chr15:44351599-44352630:+|4.469654475794719|0.1038654815763851|5.43|151.0|15|1|sense MSMS UPN47_class_I_Rep_2 3 515.3065185546875 2 515.306867 1028.59918 NaN NaN NaN NaN NaN NaN NaN 62.605 1 65.86 65.36 66.36 3.2558 0 0 0 0.40625 1 14795 14795 2.3027 0 1 48477 9437 30553 30567 55923 55923 0.08602513105302023 VKPIKAKP 8 Unmodified _VKPIKAKP_ 0 0 0 nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 MULTI-SECPEP UPN48_class_I_Rep_2 6 441.2973327636719 2 440.802563 879.590573 0.12061 5.3165E-05 -3.9102 -0.0017236 -3.7896 -0.0016705 440.79936635476395 83.705 0.070213 87.386 87.369 87.439 3.6814 8 6 2 0 0 0 0.72333 1 19906 19906 0.69038 0 1 82064 48478 4527 30554 30568 55924 55924 0.1459614641612461 VKPIKAKP 8 Unmodified _VKPIKAKP_ 0 0 0 nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 MULTI-MATCH UPN47_class_I_Rep_1 2 2 440.802563 879.590573 0.099592 4.39E-05 -2.5347 -0.0011173 -2.4351 -0.0010734 440.799193278798 84.038 0.15822 87.603 87.484 87.643 3.5655 0.1021 0.0014513 NaN 0.69038 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 41587 48479 4527 30554 30568 0.1459614641612461 VKPIKAKP 8 Unmodified _VKPIKAKP_ 0 0 0 nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 440.802563 879.590573 -0.18848 -8.3083E-05 -5.4283 -0.0023928 -5.6168 -0.0024759 440.79935221237247 84.089 0.28774 87.501 87.442 87.73 3.4116 -0.00058365 -0.0010997 NaN 0.69038 50 37 2 NaN NaN NaN NaN 0 NaN NaN 0 173760 48480 4527 30554 30568 0.1459614641612461 VKPIKAKP 8 Unmodified _VKPIKAKP_ 0 0 0 nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 nc|ENSG00000171533|Q96JE9-2|MAP6 MULTI-MATCH UPN48_class_I_Rep_3 7 2 440.802563 879.590573 0.17528 7.7264E-05 -4.1871 -0.0018457 -4.0119 -0.0017684 440.79958093466166 83.787 0.065689 87.515 87.477 87.543 3.7281 0.013724 -5.4919E-06 NaN 0.69038 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 78874 48481 4527 30554 30568 0.1459614641612461 VKPKKLRRRRR 11 Unmodified _VKPKKLRRRRR_ 0 0 0 REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF MSMS UPN46_class_I_Rep_3 1 498.2623596191406 3 498.342693 1492.00625 NaN NaN NaN NaN NaN NaN NaN 81.405 1 81.405 80.905 81.905 0 0 0 0 0.38417 1 19223 19223 0 0 1 + 48482 21926 30555 30569 55925 55925 0.27992775321081353 VKPKKLRRRRR 11 Unmodified _VKPKKLRRRRR_ 0 0 0 REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF MSMS UPN48_class_I_Rep_1 5 498.3420104980469 3 498.342693 1492.00625 NaN NaN NaN NaN NaN NaN NaN 76.115 1 79.615 79.115 80.115 3.4996 0 0 0 0.38417 1 18070 18070 0 0 1 + 48483 21926 30555 30569 55926 55926 0.27992775321081353 VKPKKLRRRRR 11 Unmodified _VKPKKLRRRRR_ 0 0 0 REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF REV__ENST00000367265.7_1_1:202777435-202777672:-|nuORF MSMS UPN48_class_I_Rep_1 5 498.3418884277344 3 498.342693 1492.00625 NaN NaN NaN NaN NaN NaN NaN 76.27 1 79.78 79.28 80.28 3.5102 0 0 0 0.38417 1 18113 18113 0 0 1 + 48484 21926 30555 30569 55927 55927 0.27992775321081353 VKPKLRVK 8 Unmodified _VKPKLRVK_ 0 0 0 ENST00000296255.7_1_3:128356748-128363813:-|nuORF ENST00000296255.7_1_3:128356748-128363813:-|nuORF ENST00000296255.7_1_3:128356748-128363813:-|nuORF MSMS UPN48_class_I_Rep_3 7 484.7672119140625 2 484.342387 966.67022 NaN NaN NaN NaN NaN NaN NaN 95.535 1 99.443 98.943 99.943 3.9084 0 0 0 0.40738 1 22647 22647 0.79363 0 1 48485 6059 30556 30570 55928 55928 0.18555213090132838 VKPKMKRVKRF 11 Unmodified _VKPKMKRVKRF_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 472.9711608886719 3 472.970986 1415.89113 0.16414 7.7634E-05 0.62554 0.00029586 0.78968 0.0003735 473.30564419034175 55.862 0.46643 55.862 55.509 55.975 0 102 54 3 0 0 0 0.68478 1 12093 12093 0.094841 0.094841 1 833100 48486 6694 30557 30571 55929 55929 0.19981910075080123 VKPKMKRVKRF 11 Unmodified _VKPKMKRVKRF_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 472.970986 1415.89113 0.16414 7.7634E-05 0.62554 0.00029586 0.78968 0.0003735 473.30564419034175 55.862 0.46643 55.862 55.509 55.975 0 0.24478 -0.0002439 NaN 0.094841 102 54 3 NaN NaN NaN NaN 0 NaN NaN 0 833100 48487 6694 30557 30571 0.19981910075080123 VKPKMKRVKRF 11 Unmodified _VKPKMKRVKRF_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 472.970986 1415.89113 0.10856 5.1345E-05 0.8366 0.00039569 0.94516 0.00044703 472.97125278622394 52.013 3.5479 55.536 54.183 57.731 3.5227 -0.081935 5.5578E-05 NaN 0.094841 870 283 4 NaN NaN NaN NaN 0 NaN NaN 0 2947300 48488 6694 30557 30571 0.19981910075080123 VKPKMKRVKRF 11 Unmodified _VKPKMKRVKRF_ 0 0 0 ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 472.970986 1415.89113 0.0802 3.7932E-05 0.78511 0.00037133 0.86531 0.00040926 472.9712457099094 51.857 3.9475 55.455 54.094 58.041 3.5979 -0.16284 -1.7489E-05 NaN 0.094841 804 311 4 NaN NaN NaN NaN 0 NaN NaN 0 5027500 48489 6694 30557 30571 0.19981910075080123 VKPLKCRPVQ 10 Unmodified _VKPLKCRPVQ_ 0 0 0 REV__MER68_dup1468|chr22:40060555-40061097:-|1.5553818194063278|0.0129488739463635|6.91|150.0|32|3|anti-sense REV__MER68_dup1468|chr22:40060555-40061097:-|1.5553818194063278|0.0129488739463635|6.91|150.0|32|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3558959960938 2 584.355168 1166.69578 NaN NaN NaN NaN NaN NaN NaN 87.713 1 87.713 87.213 88.213 0 0 0 0 0.53105 1 21032 21032 0.40072 0 1 + 48490 31537 30558 30572 55930 55930 0.1191031955024755 VKPLKTIL 8 Unmodified _VKPLKTIL_ 0 0 0 REV__L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|62|2|sense REV__L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|62|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.3177490234375 2 456.318046 910.621539 -0.34961 -0.00015953 0.019733 9.0046E-06 -0.32988 -0.00015053 456.3179878932241 36.104 0.96708 39.78 39.37 40.337 3.6762 104 69 2 0 0 0 0.82752 1 6641 6641 8.5933 0 1 149080 + 48491 24168 30559 30573 55931 55931 0.16265299730378047 VKPLKTIL 8 Unmodified _VKPLKTIL_ 0 0 0 REV__L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|62|2|sense REV__L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|62|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 456.318046 910.621539 -0.34961 -0.00015953 0.019733 9.0046E-06 -0.32988 -0.00015053 456.3179878932241 36.104 0.96708 39.78 39.37 40.337 3.6762 -0.091043 -0.00013676 NaN 8.5933 104 69 2 NaN NaN NaN NaN 0 NaN NaN 0 149080 + 48492 24168 30559 30573 0.16265299730378047 VKPLLRVKP 9 Unmodified _VKPLLRVKP_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS UPN46_class_I_Rep_3 1 525.3634643554688 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 117.53 1 117.53 117.03 118.03 0 0 0 0 0.4029 1 29135 29135 0 0 1 + 48493 23101 30560 30574 55932 55932 0.18967768778657046 VKPLLRVKP 9 Unmodified _VKPLLRVKP_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS UPN47_class_I_Rep_1 2 525.3641357421875 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 97.598 1 101.38 100.88 101.88 3.7861 0 0 0 0.4029 1 24181 24181 0 0 1 + 48494 23101 30560 30574 55933 55933 0.18967768778657046 VKPLLRVKP 9 Unmodified _VKPLLRVKP_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS UPN48_class_I_Rep_1 5 525.3634643554688 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 111.11 1 114.75 114.25 115.25 3.6326 0 0 0 0.4029 1 26957 26957 0 0 1 + 48495 23101 30560 30574 55934 55934 0.18967768778657046 VKPLLRVKP 9 Unmodified _VKPLLRVKP_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS UPN48_class_I_Rep_2 6 525.3635864257812 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 80.522 1 84.167 83.667 84.667 3.6446 0 0 0 0.4029 1 19105 19105 0 0 1 + 48496 23101 30560 30574 55935 55935 0.18967768778657046 VKPLLRVKP 9 Unmodified _VKPLLRVKP_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS UPN48_class_I_Rep_2 6 525.3641967773438 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 112.46 1 116.13 115.63 116.63 3.6648 0 0 0 0.4029 1 26794 26794 0 0 1 + 48497 23101 30560 30574 55936 55936 0.18967768778657046 VKPLRKKKKKG 11 Unmodified _VKPLRKKKKKG_ 0 0 0 AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 437.3111877441406 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 59.354 1 62.519 62.019 63.019 3.1651 0 0 0 0.38417 1 13861 13861 0.094841 0 1 48498 62 30561 30575 55937 55937 0.26606153952525347 VKPLRKKKKKG 11 Unmodified _VKPLRKKKKKG_ 0 0 0 AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 437.3109130859375 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 63.284 1 66.453 65.953 66.953 3.1698 0 0 0 0.38417 1 15061 15061 0.094841 0 1 48499 62 30561 30575 55938 55938 0.26606153952525347 VKPLRKKKKKG 11 Unmodified _VKPLRKKKKKG_ 0 0 0 AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense AluJb_dup7444|chr1:148523127-148523417:-|2.4069244790445694|0.143377359438714|4.07|151.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 437.3101806640625 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 113.59 1 117.09 116.59 117.59 3.4963 0 0 0 0.38417 1 27868 27868 0.094841 0 1 48500 62 30561 30575 55939 55939 0.26606153952525347 VKPNANRIA 9 Unmodified _VKPNANRIA_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MSMS UPN46_class_I_Rep_3 1 491.79217529296875 2 491.793258 981.571963 NaN NaN NaN NaN NaN NaN NaN 90.169 1 90.169 89.669 90.669 0 0 0 0 0.39518 1 21733 21733 1.8442 1.0506 1 48501 2728 30562 30576 55940 55940 0.08043984774258206 VKPNKPMR 8 Unmodified _VKPNKPMR_ 0 0 0 REV__L1ME4b_dup4477|chr3:138626277-138627044:-|1.0002865386025903|0.272036607148001|1.88|151.0|14|2|sense REV__L1ME4b_dup4477|chr3:138626277-138627044:-|1.0002865386025903|0.272036607148001|1.88|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 485.2863464355469 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 42.663 1 46.171 45.671 46.671 3.5079 0 0 0 0.40404 1 7917 7917 5.2307 1.2863 1 + 48502 28298 30563 30577 55941 55941 0.07341830390532778 VKPNKPMR 8 Unmodified _VKPNKPMR_ 0 0 0 REV__L1ME4b_dup4477|chr3:138626277-138627044:-|1.0002865386025903|0.272036607148001|1.88|151.0|14|2|sense REV__L1ME4b_dup4477|chr3:138626277-138627044:-|1.0002865386025903|0.272036607148001|1.88|151.0|14|2|sense MSMS UPN48_class_I_Rep_2 6 485.2864074707031 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 37.32 1 41.022 40.522 41.522 3.7021 0 0 0 0.40625 1 6375 6375 2.3027 0.24298 1 + 48503 28298 30563 30577 55942 55942 0.07341830390532778 VKPNKPMR 8 Unmodified _VKPNKPMR_ 0 0 0 REV__L1ME4b_dup4477|chr3:138626277-138627044:-|1.0002865386025903|0.272036607148001|1.88|151.0|14|2|sense REV__L1ME4b_dup4477|chr3:138626277-138627044:-|1.0002865386025903|0.272036607148001|1.88|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 485.2850341796875 2 485.286754 968.558955 NaN NaN NaN NaN NaN NaN NaN 43.198 1 46.837 46.337 47.337 3.6385 0 0 0 0.40625 1 8009 8009 2.3027 0.24298 1 + 48504 28298 30563 30577 55943 55943 0.07341830390532778 VKPRLRTT 8 Unmodified _VKPRLRTT_ 0 0 0 nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH nc|ENSG00000105953|Q02218-2|OGDH nc|ENSG00000105953|Q02218-2|OGDH MSMS UPN47_class_I_Rep_1 2 485.81201171875 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.47 1 72.838 72.338 73.338 3.3678 0 0 0 0.40753 1 16835 16835 0.6015 0 1 48505 1771 30564 30578 55944 55944 0.12232861670997863 VKPSGGAEVEW 11 Unmodified _VKPSGGAEVEW_ 0 0 0 REV__AluSx1_dup1218|chr1:17411295-17411600:+|1.5828322934238226|0.3724027538340919|2.09|151.0|1|1|sense REV__AluSx1_dup1218|chr1:17411295-17411600:+|1.5828322934238226|0.3724027538340919|2.09|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 579.7937622070312 2 579.793121 1157.57169 NaN NaN NaN NaN NaN NaN NaN 35.126 1 38.641 38.141 39.141 3.5144 0 0 0 0.38417 1 5706 5706 2.7352 0.89096 1 + 48506 17167 30565 30579 55945 55945 -0.0007947973624595761 VKPSIIFYS 9 Unmodified _VKPSIIFYS_ 0 0 0 REV__THE1A-int_dup1150|chr12:110672965-110674493:+|2.014281946806449|0.0839362105333041|4.58|151.0|64|2|anti-sense REV__THE1A-int_dup1150|chr12:110672965-110674493:+|2.014281946806449|0.0839362105333041|4.58|151.0|64|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.822021484375 2 527.302593 1052.59063 NaN NaN NaN NaN NaN NaN NaN 30.215 1 30.215 29.715 30.715 0 0 0 0 0.36505 1 4888 4888 7.2892 1.5288 1 + 48507 32205 30566 30580 55946 55946 0.06644101625465737 VKPSLKPYSR 10 Unmodified _VKPSLKPYSR_ 0 0 0 MLT1G3_dup598|chr3:138777221-138777687:+|1.1979605090935914|0.0057163245510076|7.71|151.0|25|2|anti-sense MLT1G3_dup598|chr3:138777221-138777687:+|1.1979605090935914|0.0057163245510076|7.71|151.0|25|2|anti-sense MLT1G3_dup598|chr3:138777221-138777687:+|1.1979605090935914|0.0057163245510076|7.71|151.0|25|2|anti-sense MSMS UPN46_class_I_Rep_3 1 587.84912109375 2 587.850773 1173.68699 NaN NaN NaN NaN NaN NaN NaN 39.322 1 39.322 38.822 39.822 0 0 0 0 0.53105 1 7549 7549 1.4819 0.15237 1 48508 16423 30567 30581 55947 55947 0.10709669185393977 VKPWDVHS 8 Unmodified _VKPWDVHS_ 0 0 0 REV__L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|4|1|sense REV__L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 483.98065185546875 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 96.8 1 100.58 100.08 101.08 3.7804 0 0 0 0.40738 1 23000 23000 0.79363 0 1 + 48509 24315 30568 30582 55948 55948 0.0077291810027873 VKPWDVHS 8 Unmodified _VKPWDVHS_ 0 0 0 REV__L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|4|1|sense REV__L1M3a_dup559|chr19:23659549-23660329:+|1.2668742847391803|0.1872517323714942|2.76|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 483.9806213378906 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 102.38 1 106.1 105.6 106.6 3.7252 0 0 0 0.40738 1 24249 24249 0.79363 0 1 + 48510 24315 30568 30582 55949 55949 0.0077291810027873 VKPWLCLPV 9 Unmodified _VKPWLCLPV_ 0 0 0 ENST00000496425.1_1_20:62373927-62374363:+|nuORF ENST00000496425.1_1_20:62373927-62374363:+|nuORF ENST00000496425.1_1_20:62373927-62374363:+|nuORF MSMS UPN48_class_I_Rep_2 6 527.8082885742188 2 527.809531 1053.60451 NaN NaN NaN NaN NaN NaN NaN 100.01 1 103.77 103.27 104.27 3.7575 0 0 0 0.39428 1 23757 23757 2.0598 1.2661 1 48511 7101 30569 30583 55950 55950 0.07985055852896039 VKPWLLSLV 9 Unmodified _VKPWLLSLV_ 0 0 0 REV__ENST00000429422.5_2_3:47892413-47892521:-|nuORF REV__ENST00000429422.5_2_3:47892413-47892521:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 527.840576171875 2 527.836603 1053.65865 0.35732 0.00018861 2.0664 0.0010907 2.4237 0.0012793 528.3380022787093 101.06 0.056984 104.57 104.52 104.58 3.5063 11 7 2 0 0 0 0.48643 1 24678 24678 2.0598 1.2661 1 122600 + 48512 22286 30570 30584 55951 55951 0.13396971276119984 VKQARRHPP 9 Unmodified _VKQARRHPP_ 0 0 0 REV__ENSG00000172349|ENST00000683961|IL16 REV__ENSG00000172349|ENST00000683961|IL16 MSMS UPN48_class_I_Rep_2 6 544.8262329101562 2 544.825424 1087.63629 NaN NaN NaN NaN NaN NaN NaN 88.501 1 92.239 91.739 92.739 3.7379 0 0 0 0.39428 1 21068 21068 2.0598 0.21551 1 + 48513 20445 30571 30585 55952 55952 0.09598184651076735 VKQAVKTRY 9 Unmodified _VKQAVKTRY_ 0 0 0 REV__MER58B_dup4817|chr12:104515050-104515364:+|1.208215524892102|0.0038315539003657|8.3|151.0|15|1|anti-sense REV__MER58B_dup4817|chr12:104515050-104515364:+|1.208215524892102|0.0038315539003657|8.3|151.0|15|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.83056640625 2 546.82984 1091.64513 0.38167 0.00020871 -0.34346 -0.00018782 0.03821 2.0895E-05 546.8296180930956 45.894 0.86408 49.531 49.127 49.991 3.6369 89 61 2 0 0 0 0.46434 1 8936 8936 4.3292 0 1 163750 + 48514 31468 30572 30586 55953 55953 0.10297113496881138 VKQFFRVV 8 Unmodified _VKQFFRVV_ 0 0 0 REV__L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|27|1|anti-sense REV__L1ME1_dup16264|chr9:37164865-37165667:-|2.79481484376176|0.3210126735406391|3.12|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_3 7 511.83270263671875 2 511.810919 1021.60729 NaN NaN NaN NaN NaN NaN NaN 22.105 1 25.82 25.32 26.32 3.7144 0 0 0 0.40746 1 2203 2203 0.69038 0 1 + 48515 27629 30573 30587 55954 55954 0.09734647302082067 VKQHNKKG 8 Unmodified _VKQHNKKG_ 0 0 0 REV__L1PA8_dup7253|chr17:2660231-2661644:-|2.797028458075789|0.1103963523786063|4.66|151.0|31|3|sense REV__L1PA8_dup7253|chr17:2660231-2661644:-|2.797028458075789|0.1103963523786063|4.66|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 469.77960205078125 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 66.305 1 69.791 69.291 70.291 3.4866 0 0 0 0.40625 1 15138 15138 2.3027 0 1 + 48516 30250 30574 30588 55955 55955 0.07447715602802418 VKQKQLQL 8 Unmodified _VKQKQLQL_ 0 0 0 REV__ENSG00000096696|ENST00000379802|DSP REV__ENSG00000096696|ENST00000379802|DSP MSMS UPN47_class_I_Rep_1 2 492.813720703125 2 492.813659 983.612765 NaN NaN NaN NaN NaN NaN NaN 37.041 1 40.71 40.21 41.21 3.6692 0 0 0 0.40746 1 6984 6984 0.69038 0 1 + 48517 18059 30575 30589 55956 55956 0.12030326093884014 VKQLGRSN 8 Unmodified _VKQLGRSN_ 0 0 0 REV__L1ME1_dup13986|chr7:112828641-112830359:-|1.1449179285958544|0.0706112845929796|4.02|151.0|57|3|sense REV__L1ME1_dup13986|chr7:112828641-112830359:-|1.1449179285958544|0.0706112845929796|4.02|151.0|57|3|sense MSMS UPN47_class_I_Rep_1 2 451.25323486328125 2 451.264333 900.514114 NaN NaN NaN NaN NaN NaN NaN 44.62 1 48.319 47.819 48.819 3.6994 0 0 0 0.40157 1 9294 9294 7.2892 0 1 + 48518 27605 30576 30590 55957 55957 0.059877228488517176 VKQMATYYE 9 Unmodified _VKQMATYYE_ 0 0 0 REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|3|1|sense REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 566.7403564453125 2 566.7708 1131.52705 NaN NaN NaN NaN NaN NaN NaN 113.21 1 116.79 116.29 117.29 3.572 0 0 0 0.39428 1 27929 27929 2.0598 0 1 + 48519 27998 30577 30591 55958 55958 -0.0334562687394282 VKQPLSIY 8 Unmodified _VKQPLSIY_ 0 0 0 ENSG00000174405|ENST00000442234|LIG4 ENSG00000174405|ENST00000442234|LIG4 ENSG00000174405|ENST00000442234|LIG4 MULTI-MSMS UPN46_class_I_Rep_3 1 474.2822570800781 2 474.28166 946.548768 0.13124 6.2247E-05 1.0732 0.00050898 1.2044 0.00057123 474.28218743115826 36.362 0.17404 36.362 36.322 36.496 0 21 13 3 0 0 0 0.82752 1 6753 6753 5.2307 0 1 902030 48520 4680 30578 30592 55959 55959 0.07335545936950894 VKQRLPTA 8 Unmodified _VKQRLPTA_ 0 0 0 REV__ENST00000398637.9_1_12:46662442-46662643:-|nuORF REV__ENST00000398637.9_1_12:46662442-46662643:-|nuORF MSMS UPN48_class_I_Rep_3 7 456.7862243652344 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 99.773 1 103.63 103.13 104.13 3.8537 0 0 0 0.40364 1 23629 23629 5.7604 1.0044 1 + 48521 22143 30579 30593 55960 55960 0.09593483888295395 VKQTQLHAQ 9 Unmodified _VKQTQLHAQ_ 0 0 0 REV__L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense REV__L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 526.7423095703125 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 114.63 1 114.63 114.13 115.13 0 0 0 0 0.38478 1 28338 28338 4.3292 0 1 + 48522 26011 30580 30594 55961 55961 0.05371663566074858 VKRFKSLN 8 Unmodified _VKRFKSLN_ 0 0 0 REV__ENSG00000092054|ENST00000355349|MYH7 REV__ENSG00000092054|ENST00000355349|MYH7 MSMS UPN46_class_I_Rep_3 1 496.30462646484375 2 496.306001 990.597449 NaN NaN NaN NaN NaN NaN NaN 79.389 1 79.389 78.889 79.889 0 0 0 0 0.40753 1 18646 18646 0.6015 0 1 + 48523 18031 30581 30595 55962 55962 0.1017745929668763 VKRFQVLY 8 Unmodified _VKRFQVLY_ 0 0 0 L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|133|3|anti-sense L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|133|3|anti-sense L1MA10_dup3464|chr11:88380290-88382386:+|1.2687463492445734|0.0287398243547715|5.46|150.0|133|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 526.3146362304688 2 526.816202 1051.61785 0.36287 0.00019117 -0.12434 -6.5506E-05 0.23853 0.00012566 526.816141756789 71.15 0.53484 74.361 73.912 74.446 3.2113 80 46 2 0 0 0 0.72333 1 17446 17446 2.8892 0 1 309090 48524 9317 30582 30596 55963 55963 0.09410629956505545 VKRGPPAS 8 Unmodified _VKRGPPAS_ 0 0 0 REV__nc|ENSG00000096080|Q9NVS2-2|MRPS18A REV__nc|ENSG00000096080|Q9NVS2-2|MRPS18A MULTI-SECPEP UPN48_class_I_Rep_3 7 406.748779296875 2 406.24287 810.471186 0.15588 6.3325E-05 0.97622 0.00039658 1.1321 0.00045991 406.24530493893405 69.931 0.042358 73.444 73.411 73.453 3.5129 4 2 2 0 0 0 0.72333 1 16136 16136 4.756 2.1785 1 18734 + 48525 31947 30583 30597 55964 55964 0.058369527914123864 VKRGQLVSI 9 Unmodified _VKRGQLVSI_ 0 0 0 REV__L1MB3_dup8865|chr9:131723270-131723949:-|1.31397173046135|0.037098436345953|5.15|151.0|6|1|sense REV__L1MB3_dup8865|chr9:131723270-131723949:-|1.31397173046135|0.037098436345953|5.15|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.3189392089844 2 500.319109 998.623664 -0.2328 -0.00011647 0.17765 8.8881E-05 -0.055151 -2.7593E-05 500.3191243457832 38.68 0.93217 42.345 41.997 42.929 3.6652 93 61 2 0 0 0 0.42249 1 7424 7424 6.7232 0 1 154260 + 48526 25928 30584 30598 55965 55965 0.12429728468180201 VKRGQLVSI 9 Unmodified _VKRGQLVSI_ 0 0 0 REV__L1MB3_dup8865|chr9:131723270-131723949:-|1.31397173046135|0.037098436345953|5.15|151.0|6|1|sense REV__L1MB3_dup8865|chr9:131723270-131723949:-|1.31397173046135|0.037098436345953|5.15|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 500.3191223144531 2 500.319109 998.623664 -0.17969 -8.9902E-05 -0.12809 -6.4084E-05 -0.30778 -0.00015399 500.3190767826381 39.026 0.87314 42.404 42.112 42.985 3.3785 70 50 2 0 0 0 0.42249 2 7633 7633;7695 6.7232 0 1 125450 + 48527 25928 30584 30598 55966;55967 55966 0.12429728468180201 VKRGQLVSI 9 Unmodified _VKRGQLVSI_ 0 0 0 REV__L1MB3_dup8865|chr9:131723270-131723949:-|1.31397173046135|0.037098436345953|5.15|151.0|6|1|sense REV__L1MB3_dup8865|chr9:131723270-131723949:-|1.31397173046135|0.037098436345953|5.15|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.3184509277344 2 500.319109 998.623664 -0.25362 -0.00012689 0.12511 6.2594E-05 -0.12852 -6.4299E-05 500.3190770916615 39.398 0.94041 42.636 42.263 43.203 3.238 105 63 2 0 0 0 0.42249 1 7836 7836 6.7232 0 1 93347 + 48528 25928 30584 30598 55968 55968 0.12429728468180201 VKRGQRRR 8 Unmodified _VKRGQRRR_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|110|1|anti-sense;MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|84|3|anti-sense;MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|52|1|anti-sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|110|1|anti-sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_2 3 528.338134765625 2 528.33649 1054.65843 NaN NaN NaN NaN NaN NaN NaN 102.43 1 105.94 105.44 106.44 3.5151 0 0 0 0.40738 1 24938 24938 0.79363 0 1 48529 16157 30585 30599 55969 55969 0.13328409119503704 VKRGQRRR 8 Unmodified _VKRGQRRR_ 0 0 0 MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|110|1|anti-sense;MER61-int_dup515|chr7:43916247-43917650:+|1.3316650932505545|0.0840782384975588|3.99|151.0|84|3|anti-sense;MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|52|1|anti-sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|110|1|anti-sense MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_2 3 528.33740234375 2 528.33649 1054.65843 NaN NaN NaN NaN NaN NaN NaN 103.3 1 106.82 106.32 107.32 3.5231 0 0 0 0.40738 1 25114 25114 0.79363 0 1 48530 16157 30585 30599 55970 55970 0.13328409119503704 VKRGVVGP 8 Unmodified _VKRGVVGP_ 0 0 0 REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF MSMS UPN47_class_I_Rep_2 3 406.2490234375 2 406.261062 810.507572 NaN NaN NaN NaN NaN NaN NaN 108.16 1 111.7 111.2 112.2 3.5333 0 0 0 0.40581 1 26210 26210 2.8892 0 1 + 48531 22958 30586 30600 55971 55971 0.09473829688135993 VKRHEMVA 8 Unmodified _VKRHEMVA_ 0 0 0 ENSG00000229676|ENST00000456783|ZNF492 ENSG00000229676|ENST00000456783|ZNF492 ENSG00000229676|ENST00000456783|ZNF492 MULTI-SECPEP UPN48_class_I_Rep_3 7 484.7668762207031 2 485.268561 968.52257 0.23469 0.00011389 0.12779 6.201E-05 0.36248 0.0001759 485.26843251500566 94.339 0.062378 98.241 98.19 98.252 3.9016 14 8 3 0 0 0 0.72333 1 22356 22356 2.8892 0 1 59004 48532 5672 30587 30601 55972 55972 0.0370495349382054 VKRHKEKK 8 Unmodified _VKRHKEKK_ 0 0 0 REV__L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|22|2|sense REV__L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.342041015625 2 526.838 1051.66145 0.32136 0.0001693 0.87648 0.00046176 1.1978 0.00063107 526.838090700745 103.16 0.31998 106.69 106.45 106.77 3.5231 60 44 2 0 0 0 0.82752 1 25096 25096 0.79363 0 1 425330 + 48533 27408 30588 30602 55973 55973 0.1376823945365686 VKRHKEKK 8 Unmodified _VKRHKEKK_ 0 0 0 REV__L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|22|2|sense REV__L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|22|2|sense MSMS UPN47_class_I_Rep_2 3 527.2681884765625 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 78.758 1 82.113 81.613 82.613 3.3554 0 0 0 0.40738 1 19575 19575 0.79363 0 1 + 48534 27408 30588 30602 55974 55974 0.1376823945365686 VKRKAVVIKK 10 Unmodified _VKRKAVVIKK_ 0 0 0 REV__ENST00000418342.5_1_1:23420759-23435517:-|nuORF REV__ENST00000418342.5_1_1:23420759-23435517:-|nuORF MSMS UPN46_class_I_Rep_3 1 584.9149169921875 2 584.91625 1167.81795 NaN NaN NaN NaN NaN NaN NaN 61.419 1 61.419 60.919 61.919 0 0 0 0 0.53105 1 13667 13667 0 0 1 + 48535 22231 30589 30603 55975 55975 0.24075104624080268 VKRKAVVIKK 10 Unmodified _VKRKAVVIKK_ 0 0 0 REV__ENST00000418342.5_1_1:23420759-23435517:-|nuORF REV__ENST00000418342.5_1_1:23420759-23435517:-|nuORF MSMS UPN47_class_I_Rep_3 4 584.7802124023438 2 584.91625 1167.81795 NaN NaN NaN NaN NaN NaN NaN 57.821 1 60.989 60.489 61.489 3.1681 0 0 0 0.53105 1 13390 13390 0 0 1 + 48536 22231 30589 30603 55976 55976 0.24075104624080268 VKRKKYTE 8 Unmodified _VKRKKYTE_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MSMS UPN48_class_I_Rep_3 7 526.31640625 2 526.316566 1050.61858 NaN NaN NaN NaN NaN NaN NaN 69.94 1 73.453 72.953 73.953 3.5128 0 0 0 0.40738 1 16148 16148 0.79363 0 1 48537 1537 30590 30604 55977 55977 0.09529424605557324 VKRKNLNP 8 Unmodified _VKRKNLNP_ 0 0 0 ENST00000539246.5_1_11:61286101-61314074:-|nuORF;ENST00000539468.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7;ENST00000540831.1_1_11:61292241-61300574:-|nuORF;nc|ENSG00000011347|O43581|SYT7;nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-2|SYT7;nc|ENSG00000011347|O43581-5|SYT7 ENST00000539246.5_1_11:61286101-61314074:-|nuORF ENST00000539246.5_1_11:61286101-61314074:-|nuORF MSMS UPN46_class_I_Rep_3 1 485.2643737792969 2 484.803626 967.592698 NaN NaN NaN NaN NaN NaN NaN 86.241 1 86.241 85.741 86.741 0 0 0 0 0.40746 1 20615 20615 0.69038 0 1 48538 773 30591 30605 55978 55978 0.10760575153926766 VKRKREEN 8 Unmodified _VKRKREEN_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN47_class_I_Rep_1 2 529.8072509765625 2 529.806897 1057.59924 NaN NaN NaN NaN NaN NaN NaN 24.923 1 28.672 28.172 29.172 3.7495 0 0 0 0.40753 1 3338 3338 0.6015 0 1 48539 5346 30592 30606 55979 55979 0.07274468314653859 VKRKREEN 8 Unmodified _VKRKREEN_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.A3037Gfs*20|1|0.07|ENSG00000197102|chr14:102027674-102027675|-/G|frameshift_variant ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN48_class_I_Rep_2 6 530.2240600585938 2 529.806897 1057.59924 NaN NaN NaN NaN NaN NaN NaN 22.463 1 26.106 25.606 26.606 3.6432 0 0 0 0.40746 1 2299 2299 0.69038 0 1 48540 5346 30592 30606 55980 55980 0.07274468314653859 VKRKTKRKR 9 Unmodified _VKRKTKRKR_ 0 0 0 REV__L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|74|2|sense REV__L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|74|2|sense MSMS UPN46_class_I_Rep_3 1 600.4120483398438 2 600.412198 1198.80984 NaN NaN NaN NaN NaN NaN NaN 42.571 1 42.571 42.071 43.071 0 0 0 0 0.4029 1 8436 8436 0 0 1 + 48541 24319 30593 30607 55981 55981 0.21838970427324966 VKRKVHKQ 8 Unmodified _VKRKVHKQ_ 0 0 0 REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 MSMS UPN46_class_I_Rep_3 1 511.8319091796875 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 26.778 1 26.778 26.278 27.278 0 0 0 0 0.40746 1 3881 3881 0.69038 0 1 + 48542 19375 30594 30608 55982 55982 0.14092256799222014 VKRKVHKQ 8 Unmodified _VKRKVHKQ_ 0 0 0 REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1 MSMS UPN48_class_I_Rep_1 5 511.83197021484375 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 24.62 1 28.186 27.686 28.686 3.5667 0 0 0 0.40746 1 2744 2744 0.69038 0 1 + 48543 19375 30594 30608 55983 55983 0.14092256799222014 VKRLDRVG 8 Unmodified _VKRLDRVG_ 0 0 0 REV__ENSG00000184867|ENST00000356824|ARMCX2 REV__ENSG00000184867|ENST00000356824|ARMCX2 MSMS UPN46_class_I_Rep_3 1 471.7964782714844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.248 1 67.248 66.748 67.748 0 0 0 0 0.40746 1 15298 15298 0.69038 0 1 + 48544 20832 30595 30609 55984 55984 0.10392288636899139 VKRLFCPVV 9 Unmodified _VKRLFCPVV_ 0 0 0 REV__ENST00000321442.9_1_5:174949385-174953654:+|nuORF REV__ENST00000321442.9_1_5:174949385-174953654:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 530.821044921875 2 530.82043 1059.62631 0.34083 0.00018092 1.3259 0.00070382 1.6667 0.00088474 530.8211194802154 73.33 0.42819 76.716 76.324 76.753 3.3861 36 28 2 0 0 0 0.48414 2 17918 17918;17976 2.3027 1.5091 1 149530 + 48545 21739 30596 30610 55985;55986 55985 0.0988786060147504 VKRLKDIVL 9 Unmodified _VKRLKDIVL_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19;nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MULTI-MSMS UPN47_class_I_Rep_1 2 542.3661499023438 2 542.366059 1082.71756 0.53487 0.0002901 0.16676 9.0445E-05 0.70163 0.00038054 542.3660014127903 108.23 0.68577 111.87 111.48 112.17 3.6355 167 59 4 0 0 0 0.41259 1 26520 26520 7.2892 0 1 10887000 48546 4164 30597 30611 55987 55987 0.17951447570453638 VKRLKDIVL 9 Unmodified _VKRLKDIVL_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19;nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MULTI-MATCH UPN48_class_I_Rep_2 6 2 542.366059 1082.71756 0.48226 0.00026156 0.53171 0.00028838 1.014 0.00054995 542.3663489972981 108.25 0.50111 111.93 111.72 112.22 3.6746 0.07578 0.00015548 NaN 7.2892 181 58 4 NaN NaN NaN NaN 0 NaN NaN 0 25245000 48547 4164 30597 30611 0.17951447570453638 VKRLKDIVL 9 Unmodified _VKRLKDIVL_ 0 0 0 ENSG00000165194|ENST00000373034|PCDH19;nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 ENSG00000165194|ENST00000373034|PCDH19 MULTI-MATCH UPN48_class_I_Rep_3 7 2 542.366059 1082.71756 0.51721 0.00028052 0.46543 0.00025244 0.98265 0.00053295 542.3662557578211 108.21 0.31296 111.89 111.76 112.07 3.6813 0.035356 8.3584E-05 NaN 7.2892 109 33 4 NaN NaN NaN NaN 0 NaN NaN 0 25834000 48548 4164 30597 30611 0.17951447570453638 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.8400573730469 2 484.840011 967.665469 0.41878 0.00020304 -0.26032 -0.00012622 0.15845 7.6824E-05 484.83980040770786 108.29 0.56009 111.83 111.35 111.91 3.5333 138 60 4 0 0 0 0.82752 1 26224 26224 0 0 1 33572000 + 48549 23407 30598 30612 55988 55988 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 484.34600830078125 2 484.840011 967.665469 0.41716 0.00020225 -0.3993 -0.0001936 0.017858 8.6583E-06 484.8397475105641 109.46 0.50065 112.99 112.93 113.43 3.5307 94 71 2 0 0 0 0.72333 1 26769 26769 0.79363 0 1 636630 + 48550 23407 30598 30612 55989 55989 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 484.8400573730469 2 484.840011 967.665469 0.19807 9.6032E-05 -0.11419 -5.5364E-05 0.08388 4.0668E-05 484.83987998185444 108.26 0.65044 111.8 111.22 111.87 3.5382 140 74 4 0 0 0 0.82752 2 26417 26417;26498 0.79363 0 1 35719000 + 48551 23407 30598 30612 55990;55991 55990 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.84002685546875 2 484.840011 967.665469 0.13317 6.4566E-05 -0.033951 -1.6461E-05 0.09922 4.8106E-05 484.83993594088105 108.15 0.20956 111.78 111.59 111.8 3.6313 56 20 4 0 0 0 0.82752 1 26120 26120 0 0 1 11165000 + 48552 23407 30598 30612 55992 55992 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 484.3470153808594 2 484.840011 967.665469 0.13262 6.4299E-05 -0.19265 -9.3402E-05 -0.060026 -2.9103E-05 484.8399175589392 109.62 0.55889 113.25 113.2 113.75 3.6321 100 77 2 0 0 0 0.72333 1 26733 26733 0.79363 0 1 531420 + 48553 23407 30598 30612 55993 55993 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 484.3474426269531 2 484.840011 967.665469 0.24744 0.00011997 -0.22116 -0.00010723 0.026281 1.2742E-05 484.8399005394114 109.26 0.86928 112.93 112.82 113.69 3.6715 183 115 2 0 0 0 0.72333 1 26162 26162 0.79363 0 1 1947900 + 48554 23407 30598 30612 55994 55994 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 484.840011 967.665469 0.25553 0.00012389 -0.97064 -0.0004706 -0.71511 -0.00034671 484.83948467778987 109.08 0.15392 112.68 112.61 112.76 3.6046 -0.25492 -0.00064596 NaN 0.79363 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1097600 + 48555 23407 30598 30612 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 484.840011 967.665469 0.13262 6.4299E-05 -0.064346 -3.1197E-05 0.068273 3.3101E-05 484.84000687168054 109.49 0.23209 113.12 112.97 113.2 3.6321 0.18328 0.00023285 NaN 0.79363 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 570770 + 48556 23407 30598 30612 0.18034328947339873 VKRLLALR 8 Unmodified _VKRLLALR_ 0 0 0 REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense REV__HAL1_dup2256|chr2:37081490-37082052:+|1.4141625515862193|0.0946205115446513|3.9|151.0|13|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 484.840011 967.665469 0.23049 0.00011175 -0.14209 -6.8892E-05 0.088401 4.286E-05 484.839831914682 109.28 0.26259 112.96 112.8 113.06 3.6751 0.019336 0.00015746 NaN 0.79363 47 37 2 NaN NaN NaN NaN 0 NaN NaN 0 1578200 + 48557 23407 30598 30612 0.18034328947339873 VKRLRVVV 8 Unmodified _VKRLRVVV_ 0 0 0 HERVH-int_dup4007|chr10:35406913-35408293:-|1.540281284141424|0.0458768209050325|5.07|151.0|68|3|anti-sense HERVH-int_dup4007|chr10:35406913-35408293:-|1.540281284141424|0.0458768209050325|5.07|151.0|68|3|anti-sense HERVH-int_dup4007|chr10:35406913-35408293:-|1.540281284141424|0.0458768209050325|5.07|151.0|68|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 484.347412109375 2 484.840011 967.665469 0.13244 6.421E-05 0.43503 0.00021092 0.56746 0.00027513 484.8404065239645 110.21 0.028198 113.84 113.82 113.85 3.6326 5 3 2 0 0 0 0.72333 1 26758 26758 0.79363 0 1 51687 48558 8148 30599 30613 55995 55995 0.1803432894736261 VKRLRVVV 8 Unmodified _VKRLRVVV_ 0 0 0 HERVH-int_dup4007|chr10:35406913-35408293:-|1.540281284141424|0.0458768209050325|5.07|151.0|68|3|anti-sense HERVH-int_dup4007|chr10:35406913-35408293:-|1.540281284141424|0.0458768209050325|5.07|151.0|68|3|anti-sense HERVH-int_dup4007|chr10:35406913-35408293:-|1.540281284141424|0.0458768209050325|5.07|151.0|68|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 484.840011 967.665469 0.24756 0.00012003 -0.44568 -0.00021608 -0.19811 -9.6053E-05 484.83970824493804 110.49 0.053772 114.16 114.14 114.2 3.669 0.15943 -0.00028204 NaN 0.79363 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 79359 48559 8148 30599 30613 0.1803432894736261 VKRQGGFIR 9 Unmodified _VKRQGGFIR_ 0 0 0 L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|11|1|sense L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|11|1|sense L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|11|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.8211669921875 2 530.82235 1059.63015 0.24635 0.00013077 -1.4803 -0.00078579 -1.234 -0.00065502 530.8214017141856 73.726 0.46019 77.031 76.665 77.125 3.3048 63 40 2 0 0 0 0.48846 1 18156 18156 1.8442 0 1 107040 48560 11093 30600 30614 55996 55996 0.10271666419566827 VKRQKYQT 8 Unmodified _VKRQKYQT_ 0 0 0 REV__L1MEf_dup9851|chr15:71905789-71906748:-|1.412251718912919|0.1438104708135533|3.3|151.0|35|3|sense REV__L1MEf_dup9851|chr15:71905789-71906748:-|1.412251718912919|0.1438104708135533|3.3|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 525.806396484375 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 12.997 1 16.385 15.885 16.885 3.388 0 0 0 0.40746 1 209 209 0.69038 0 1 + 48561 28710 30601 30615 55997 55997 0.07536253945750104 VKRQPLWTL 9 Unmodified _VKRQPLWTL_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MULTI-MSMS UPN47_class_I_Rep_1 2 570.8482055664062 2 570.848033 1139.68151 0.48503 0.00027688 -0.24322 -0.00013884 0.2418 0.00013803 571.3494809256046 110.69 0.29686 114.28 114.14 114.44 3.5835 41 35 2 0 0 0 0.50015 1 27290 27290 0.6015 0 1 418860 48562 3354 30602 30616 55998 55998 0.11725990393597385 VKRRCRRM 8 Unmodified _VKRRCRRM_ 0 0 0 REV__Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|23|2|sense REV__Tigger1_dup6343|chr8:70208114-70209895:+|2.169096189967943|0.1984284745180043|3.45|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 552.8215942382812 2 552.821304 1103.62805 NaN NaN NaN NaN NaN NaN NaN 87.384 1 91.112 90.612 91.612 3.7279 0 0 0 0.40798 1 20792 20792 0 0 1 + 48563 32495 30603 30617 55999 55999 0.08038591138438278 VKRRDAAP 8 Unmodified _VKRRDAAP_ 0 0 0 nc|ENSG00000073146|Q9BXT6-5|MOV10L1;nc|ENSG00000073146|Q9BXT6-4|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1 nc|ENSG00000073146|Q9BXT6-5|MOV10L1 nc|ENSG00000073146|Q9BXT6-5|MOV10L1 MSMS UPN48_class_I_Rep_2 6 456.7723388671875 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 78.079 1 81.701 81.201 82.201 3.6222 0 0 0 0.40738 1 18515 18515 0.79363 0 1 48564 1111 30604 30618 56000 56000 0.07079429085729316 VKRRFSLF 8 Unmodified _VKRRFSLF_ 0 0 0 L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.82177734375 2 526.821818 1051.62908 0.041896 2.2072E-05 -0.21496 -0.00011325 -0.17306 -9.1173E-05 526.8216192694077 28.659 0.18611 28.659 28.529 28.716 0 15 13 2 0 0 0 0.82752 1 4397 4397 0.79363 0 1 133610 48565 14572 30605 30619 56001 56001 0.10533452050640335 VKRRFSLF 8 Unmodified _VKRRFSLF_ 0 0 0 L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.822509765625 2 526.821818 1051.62908 0.12004 6.324E-05 -0.54786 -0.00028862 -0.42782 -0.00022538 526.821461666417 32.189 0.092659 32.189 32.126 32.219 0 10 6 2 0 0 0 0.82752 1 5470 5470 0.79363 0 1 74333 48566 14572 30605 30619 56002 56002 0.10533452050640335 VKRRFSLF 8 Unmodified _VKRRFSLF_ 0 0 0 L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense L1PA6_dup180|chr1:100944684-100950115:-|3.982577084243648|0.1821818994559605|4.45|151.0|314|3|anti-sense MSMS UPN46_class_I_Rep_3 1 526.82177734375 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 110.71 1 110.71 110.21 111.21 0 0 0 0 0.40738 1 27270 27270 0.79363 0 1 48567 14572 30605 30619 56003 56003 0.10533452050640335 VKRRIMWHI 9 Unmodified _VKRRIMWHI_ 0 0 0 ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E MSMS UPN48_class_I_Rep_3 7 619.8688354492188 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 98.201 1 102.1 101.6 102.6 3.9022 0 0 0 0.40038 1 23271 23271 0.6015 0 1 48568 4912 30606 30620 56004 56004 0.1136484788130474 VKRRMGPRIV 10 Unmodified _VKRRMGPRIV_ 0 0 0 REV__nc|ENSG00000132002|P25685-2|DNAJB1 REV__nc|ENSG00000132002|P25685-2|DNAJB1 MULTI-MSMS UPN48_class_I_Rep_2 6 404.5885925292969 3 404.588765 1210.74446 0.037762 1.5278E-05 0.3431 0.00013882 0.38087 0.00015409 404.58884824898104 38.8 1.365 42.53 42.085 43.45 3.7297 173 137 2 0 0 0 0.56433 1 6815 6815 0.77653 0.77653 1 246440 + 48569 18995 30607 30621 56005 56005 0.14752232909995655 VKRRMGPRIV 10 Unmodified _VKRRMGPRIV_ 0 0 0 REV__nc|ENSG00000132002|P25685-2|DNAJB1 REV__nc|ENSG00000132002|P25685-2|DNAJB1 MULTI-MSMS UPN48_class_I_Rep_3 7 404.5889587402344 3 404.588765 1210.74446 0.0071197 2.8806E-06 0.39949 0.00016163 0.40661 0.00016451 404.58887143428893 38.917 1.4149 42.573 41.885 43.3 3.6557 210 132 2 0 0 0 0.56444 1 6685 6685 0.69767 0.69767 1 223250 + 48570 18995 30607 30621 56006 56006 0.14752232909995655 VKRRSTRGK 9 Unmodified _VKRRSTRGK_ 0 0 0 REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF MSMS UPN47_class_I_Rep_3 4 544.3438110351562 2 544.343981 1086.67341 NaN NaN NaN NaN NaN NaN NaN 111.25 1 114.77 114.27 115.27 3.5207 0 0 0 0.4029 1 27300 27300 0 0 1 + 48571 21539 30608 30622 56007 56007 0.13353856196818015 VKRSRRRP 8 Unmodified _VKRSRRRP_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS UPN47_class_I_Rep_2 3 527.8399658203125 2 527.838865 1053.66318 NaN NaN NaN NaN NaN NaN NaN 87.882 1 91.329 90.829 91.829 3.4471 0 0 0 0.40738 1 21848 21848 0.79363 0 1 48572 4312 30609 30623 56008 56008 0.13849293262251194 VKRSRRRP 8 Unmodified _VKRSRRRP_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS UPN47_class_I_Rep_2 3 527.83935546875 2 527.838865 1053.66318 NaN NaN NaN NaN NaN NaN NaN 91.995 1 95.46 94.96 95.96 3.4652 0 0 0 0.40738 1 22753 22753 0.79363 0 1 48573 4312 30609 30623 56009 56009 0.13849293262251194 VKRSRRRP 8 Unmodified _VKRSRRRP_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS UPN47_class_I_Rep_2 3 527.8391723632812 2 527.838865 1053.66318 NaN NaN NaN NaN NaN NaN NaN 94.698 1 98.17 97.67 98.67 3.472 0 0 0 0.40738 1 23331 23331 0.79363 0 1 48574 4312 30609 30623 56010 56010 0.13849293262251194 VKRVHFTL 8 Unmodified _VKRVHFTL_ 0 0 0 REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF MSMS UPN47_class_I_Rep_2 3 500.30816650390625 2 500.308544 998.602535 NaN NaN NaN NaN NaN NaN NaN 87.94 1 91.387 90.887 91.887 3.4471 0 0 0 0.40404 1 21864 21864 5.2307 0.47466 1 + 48575 22542 30610 30624 56011 56011 0.10317763159321203 VKRVKKKKKK 10 Unmodified _VKRVKKKKKK_ 0 0 0 REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF MSMS UPN46_class_I_Rep_3 1 635.4613647460938 2 635.463899 1268.91324 NaN NaN NaN NaN NaN NaN NaN 64.79 1 64.79 64.29 65.29 0 0 0 0 0.53105 1 14608 14608 0 0 1 + 48576 22348 30611 30625 56012 56012 0.2895445781514354 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-SECPEP UPN46_class_I_Rep_3 1 491.81103515625 2 491.847836 981.681119 0.29902 0.00014707 -0.19189 -9.4379E-05 0.10713 5.2692E-05 491.8476926071198 110.28 0.036461 110.28 110.25 110.29 0 4 2 2 0 0 0 0.72333 1 27154 27154 0 0 1 50138 + 48577 20023 30612 30626 56013 56013 0.1895461546439492 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-SECPEP UPN47_class_I_Rep_3 4 491.3089904785156 2 491.847836 981.681119 0.26926 0.00013243 -0.076339 -3.7547E-05 0.19292 9.4886E-05 491.8476199813903 108.95 0.22976 112.49 112.46 112.69 3.5382 41 26 2 0 0 0 0.72333 1 26757 26757 0 0 1 4354100 + 48578 20023 30612 30626 56014 56014 0.1895461546439492 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-SECPEP UPN47_class_I_Rep_3 4 491.3089904785156 2 491.847836 981.681119 0.26919 0.0001324 -0.094151 -4.6308E-05 0.17504 8.6091E-05 491.84756337269545 108.8 0.25441 112.34 112.22 112.47 3.5382 31 25 2 0 0 0 0.72333 1 26712 26712 0 0 1 5487100 + 48579 20023 30612 30626 56015 56015 0.1895461546439492 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-MSMS UPN48_class_I_Rep_2 6 491.8473815917969 2 491.847836 981.681119 0.26726 0.00013145 -0.87057 -0.00042819 -0.60331 -0.00029673 491.84775944372603 109.27 0.63703 112.95 112.81 113.45 3.6715 107 85 2 0 0 0 0.82752 3 26078 26078;26113;26123 0 0 1 1433100 + 48580 20023 30612 30626 56016;56017;56018 56016 0.1895461546439492 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-MATCH UPN48_class_I_Rep_2 6 2 491.847836 981.681119 0.26727 0.00013146 0.04384 2.1563E-05 0.31111 0.00015302 491.8476824114921 108.81 0.55701 112.49 112.25 112.8 3.6746 -0.0011847 3.3369E-05 NaN 0 109 57 2 NaN NaN NaN NaN 0 NaN NaN 0 8172400 + 48581 20023 30612 30626 0.1895461546439492 VKRVRLVI 8 Unmodified _VKRVRLVI_ 0 0 0 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 REV__nc|ENSG00000164049|Q6X9E4-2|FBXW12 MULTI-MATCH UPN48_class_I_Rep_3 7 2 491.847836 981.681119 0.2436 0.00011981 0.076914 3.783E-05 0.32051 0.00015764 491.8477987982606 109.27 0.27299 112.95 112.79 113.06 3.6751 0.00084398 0.00036175 NaN 0 49 38 2 NaN NaN NaN NaN 0 NaN NaN 0 1810800 + 48582 20023 30612 30626 0.1895461546439492 VKRYRFAL 8 Unmodified _VKRYRFAL_ 0 0 0 REV__nc|ENSG00000158161|Q99504-2|EYA3 REV__nc|ENSG00000158161|Q99504-2|EYA3 MSMS UPN47_class_I_Rep_1 2 526.8214721679688 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 110.3 1 113.88 113.38 114.38 3.5835 0 0 0 0.40604 1 27196 27196 2.5775 0.51773 1 + 48583 19838 30613 30627 56019 56019 0.10533452050663072 VKRYRFAL 8 Unmodified _VKRYRFAL_ 0 0 0 REV__nc|ENSG00000158161|Q99504-2|EYA3 REV__nc|ENSG00000158161|Q99504-2|EYA3 MSMS UPN47_class_I_Rep_1 2 526.8220825195312 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 110.35 1 113.93 113.43 114.43 3.5835 0 0 0 0.40604 1 27208 27208 2.5775 0.51773 1 + 48584 19838 30613 30627 56020 56020 0.10533452050663072 VKSAASETYM 10 Unmodified _VKSAASETYM_ 0 0 0 nc|ENSG00000196220|O43295-2|SRGAP3;ENST00000485983.6_1_3:9079745-9122942:-|nuORF;nc|ENSG00000196220|O43295-3|SRGAP3;ENSG00000196220|ENST00000383836|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 MSMS UPN48_class_I_Rep_2 6 543.7625732421875 2 543.760432 1085.50631 NaN NaN NaN NaN NaN NaN NaN 69.712 1 73.234 72.734 73.734 3.5216 0 0 0 0.53105 1 16167 16167 3.2813 0.70383 1 48585 16790 30614 30628 56021 56021 -0.03302217253599338 VKSAHKRS 8 Unmodified _VKSAHKRS_ 0 0 0 REV__nc|ENSG00000165061|Q9H898-2|ZMAT4 REV__nc|ENSG00000165061|Q9H898-2|ZMAT4 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7718200683594 2 456.772326 911.530098 -0.13916 -6.3565E-05 0.23051 0.00010529 0.091349 4.1726E-05 456.77232281723144 81.037 0.66075 84.36 84.077 84.738 3.3231 152 78 3 0 0 0 0.82752 1 20346 20346 0.79363 0 1 367650 + 48586 20100 30615 30629 56022 56022 0.07079429085752054 VKSARHKQT 9 Unmodified _VKSARHKQT_ 0 0 0 L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 527.8082885742188 2 527.809439 1053.60433 NaN NaN NaN NaN NaN NaN NaN 99.116 1 103 102.5 103.5 3.8839 0 0 0 0.38478 1 23481 23481 4.3292 1.7518 1 48587 10379 30616 30630 56023 56023 0.07966772177269377 VKSARHKQT 9 Unmodified _VKSARHKQT_ 0 0 0 L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 527.8085327148438 2 527.809439 1053.60433 NaN NaN NaN NaN NaN NaN NaN 99.313 1 103.2 102.7 103.7 3.8839 0 0 0 0.38478 1 23524 23524 4.3292 2.0265 1 48588 10379 30616 30630 56024 56024 0.07966772177269377 VKSCSISKKK 10 Unmodified _VKSCSISKKK_ 0 0 0 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 MSMS UPN48_class_I_Rep_3 7 554.6845092773438 2 554.331359 1106.64816 NaN NaN NaN NaN NaN NaN NaN 25.803 1 29.57 29.07 30.07 3.7663 0 0 0 0.53105 1 3189 3189 0 0 1 48589 2403 30617 30631 56025 56025 0.09910620559367089 VKSIVVKGYN 10 Unmodified _VKSIVVKGYN_ 0 0 0 ENST00000497878.5_1_19:2988043-2994999:+|nuORF;nc|ENSG00000104953|Q9H808-2|TLE6;ENSG00000104953|ENST00000246112|TLE6 ENST00000497878.5_1_19:2988043-2994999:+|nuORF ENST00000497878.5_1_19:2988043-2994999:+|nuORF MSMS UPN47_class_I_Rep_1 2 553.8339233398438 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 87.844 1 91.5 91 92 3.6563 0 0 0 0.53105 1 21959 21959 1.3295 0.63916 1 48590 1713 30618 30632 56026 56026 0.10094577919812764 VKSKACEKV 9 Unmodified _VKSKACEKV_ 0 0 0 nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|5|intron;ENSG00000107077.19,KDM4C,chr9,+,I21.1,7014338,7015852|37|7.4|6|intron nc|ENSG00000293552|Q9H3R0-2|KDM4C nc|ENSG00000293552|Q9H3R0-2|KDM4C MSMS UPN47_class_I_Rep_1 2 496.2819519042969 2 496.283877 990.553201 NaN NaN NaN NaN NaN NaN NaN 83.492 1 87.031 86.531 87.531 3.5386 0 0 0 0.38784 1 20882 20882 3.5965 0.70727 1 48591 1810 30619 30633 56027 56027 0.05754687088199262 VKSLKIRFC 9 Unmodified _VKSLKIRFC_ 0 0 0 L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.2409057617188 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 114.85 1 114.85 114.35 115.35 0 0 0 0 0.4007 1 28401 28401 0.52476 0 1 48592 13177 30620 30634 56028 56028 0.10515245630199388 VKSLKIRFC 9 Unmodified _VKSLKIRFC_ 0 0 0 L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense MSMS UPN47_class_I_Rep_3 4 547.331787109375 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 112.32 1 115.83 115.33 116.33 3.5127 0 0 0 0.4007 1 27575 27575 0.52476 0 1 48593 13177 30620 30634 56029 56029 0.10515245630199388 VKSLKIRFC 9 Unmodified _VKSLKIRFC_ 0 0 0 L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense L1MEd_dup15249|chr11:78358585-78359804:+|2.946554601614546|0.0134239203557234|7.78|150.0|94|3|anti-sense MSMS UPN48_class_I_Rep_1 5 547.332275390625 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 69.112 1 72.567 72.067 73.067 3.4548 0 0 0 0.4007 1 16008 16008 0.52476 0 1 48594 13177 30620 30634 56030 56030 0.10515245630199388 VKSLRLPLIV 10 Unmodified _VKSLRLPLIV_ 0 0 0 REV__AluJr_dup59267|chr13:41012531-41012853:-|1.116777237513688|0.0131523194766105|6.41|151.0|24|3|anti-sense REV__AluJr_dup59267|chr13:41012531-41012853:-|1.116777237513688|0.0131523194766105|6.41|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_3 4 569.773681640625 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 70.581 1 73.793 73.293 74.293 3.2113 0 0 0 0.53105 1 17274 17274 0.45834 0 1 + 48595 17046 30621 30635 56031 56031 0.2016030712159136 VKSQFNEKL 9 Unmodified _VKSQFNEKL_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|37|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|37|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|37|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 546.83056640625 2 546.806031 1091.59751 0.38272 0.00020927 -0.039435 -2.1563E-05 0.34328 0.00018771 546.806138147187 46.41 0.52244 50.047 49.771 50.293 3.6363 48 31 2 0 0 0 0.11705 1 8936 8936 10.824 0 1 170430 48596 15936 30622 30636 56032 56032 0.05537414506034111 VKSRGTFI 8 Unmodified _VKSRGTFI_ 0 0 0 L1MC3_dup3879|chr5:54053224-54054060:+|1.235370596932467|0.0124205836938803|6.64|151.0|50|3|anti-sense L1MC3_dup3879|chr5:54053224-54054060:+|1.235370596932467|0.0124205836938803|6.64|151.0|50|3|anti-sense L1MC3_dup3879|chr5:54053224-54054060:+|1.235370596932467|0.0124205836938803|6.64|151.0|50|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 454.2709045410156 2 454.271627 906.528701 0.094474 4.2917E-05 -0.47375 -0.00021521 -0.37928 -0.00017229 454.27140519645974 29.568 0.31411 33.118 32.892 33.206 3.5499 43 28 2 0 0 0 0.82752 1 4153 4153 2.0598 0 1 58950 48597 11334 30623 30637 56033 56033 0.07169794996980272 VKSRGTFI 8 Unmodified _VKSRGTFI_ 0 0 0 L1MC3_dup3879|chr5:54053224-54054060:+|1.235370596932467|0.0124205836938803|6.64|151.0|50|3|anti-sense L1MC3_dup3879|chr5:54053224-54054060:+|1.235370596932467|0.0124205836938803|6.64|151.0|50|3|anti-sense L1MC3_dup3879|chr5:54053224-54054060:+|1.235370596932467|0.0124205836938803|6.64|151.0|50|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 454.271627 906.528701 0.069894 3.1751E-05 0.12379 5.6236E-05 0.19369 8.7987E-05 454.2716436202025 29.571 0.25202 33.3 33.242 33.494 3.7286 0.13092 0.00032566 NaN 2.0598 33 29 2 NaN NaN NaN NaN 0 NaN NaN 0 41267 48598 11334 30623 30637 0.07169794996980272 VKSRKRRKG 9 Unmodified _VKSRKRRKG_ 0 0 0 ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7 ENSG00000163453|ENST00000295666|IGFBP7 ENSG00000163453|ENST00000295666|IGFBP7 MSMS UPN46_class_I_Rep_3 1 557.3909301757812 2 557.867623 1113.72069 NaN NaN NaN NaN NaN NaN NaN 74.154 1 74.154 73.654 74.654 0 0 0 0 0.4029 1 17201 17201 0 0 1 48599 4002 30624 30638 56034 56034 0.1683813546781039 VKSSKSTKTK 10 Unmodified _VKSSKSTKTK_ 0 0 0 REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.208740234375 2 547.332413 1092.65027 NaN NaN NaN NaN NaN NaN NaN 118.53 1 121.95 121.45 122.45 3.4238 0 0 0 0.53105 1 29235 29235 0 0 1 + 48600 19549 30625 30639 56035 56035 0.10765372568857856 VKSSKSTKTK 10 Unmodified _VKSSKSTKTK_ 0 0 0 REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.2612915039062 2 547.332413 1092.65027 NaN NaN NaN NaN NaN NaN NaN 119.69 1 123.11 122.61 123.61 3.4157 0 0 0 0.53105 1 29568 29568 0 0 1 + 48601 19549 30625 30639 56036 56036 0.10765372568857856 VKSSPLLY 8 Unmodified _VKSSPLLY_ 0 0 0 REV__THE1B-int_dup3834|chr15:76429279-76430857:+|1.3479975768188177|0.0202510132334174|6.06|151.0|94|3|anti-sense REV__THE1B-int_dup3834|chr15:76429279-76430857:+|1.3479975768188177|0.0202510132334174|6.06|151.0|94|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 453.4334716796875 2 453.768386 905.522219 0.047178 2.1408E-05 1.6855 0.00076485 1.7327 0.00078625 453.76808022491804 35.09 0.095413 35.09 35.04 35.136 0 6 5 2 0 0 0 0.72333 1 6357 6357 0.79363 0 1 16599 + 48602 32240 30626 30640 56037 56037 0.0656785704561571 VKSYKNIL 8 Unmodified _VKSYKNIL_ 0 0 0 REV__L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|8|1|sense REV__L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|8|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7954406738281 2 482.794935 963.575317 -0.068312 -3.2981E-05 1.3348 0.00064444 1.2665 0.00061146 482.79537938006604 26.334 0.12632 26.334 26.236 26.362 0 19 12 2 0 0 0 0.82752 1 3757 3757 2.5775 0 1 83792 + 48603 24929 30627 30641 56038 56038 0.09207234828284072 VKTAKLKIR 9 Unmodified _VKTAKLKIR_ 0 0 0 ENST00000522207.1_1_8:86351138-86354561:+|nuORF ENST00000522207.1_1_8:86351138-86354561:+|nuORF ENST00000522207.1_1_8:86351138-86354561:+|nuORF MSMS UPN48_class_I_Rep_1 5 528.8662719726562 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 109.55 1 113.19 112.69 113.69 3.6321 0 0 0 0.40038 1 26608 26608 0.6015 0 1 48604 7241 30628 30642 56039 56039 0.19226867290285554 VKTAREPEF 9 Unmodified _VKTAREPEF_ 0 0 0 Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|73|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|73|3|sense Tigger1_dup1064|chr2:24603020-24605357:-|1.4719675489142066|0.030906238799296|5.57|151.0|73|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 538.7902221679688 2 538.790381 1075.56621 0.46808 0.0002522 -1.6932 -0.00091226 -1.2251 -0.00066006 538.790083726859 55.198 1.4163 58.508 57.779 59.195 3.3102 142 78 4 0 0 0 0.47493 1 12689 12689 3.2813 0.28607 1 318790 48605 32995 30629 30643 56040 56040 0.03144841471953441 VKTEGGYRG 9 Unmodified _VKTEGGYRG_ 0 0 0 REV__nc|ENSG00000115875|Q16629-3|SRSF7 REV__nc|ENSG00000115875|Q16629-3|SRSF7 MSMS UPN46_class_I_Rep_3 1 483.796630859375 2 483.753798 965.493044 NaN NaN NaN NaN NaN NaN NaN 117.47 1 117.47 116.97 117.97 0 0 0 0 0.39428 1 29118 29118 2.0598 1.2661 1 + 48606 18584 30630 30644 56041 56041 0.008917127493418775 VKTGLPYKG 9 Unmodified _VKTGLPYKG_ 0 0 0 LTR17_dup119|chr3:17735447-17736208:-|1.8772225305208552|0.0262988074387802|6.16|151.0|38|2|anti-sense LTR17_dup119|chr3:17735447-17736208:-|1.8772225305208552|0.0262988074387802|6.16|151.0|38|2|anti-sense LTR17_dup119|chr3:17735447-17736208:-|1.8772225305208552|0.0262988074387802|6.16|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_2 6 481.8351135253906 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 58.562 1 62.06 61.56 62.56 3.4987 0 0 0 0.39428 1 12766 12766 2.0598 0 1 48607 15578 30631 30645 56042 56042 0.07734948311224343 VKTHQCPV 8 Unmodified _VKTHQCPV_ 0 0 0 L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|69|2|sense;L1PA6_dup4676|chr12:38656904-38659786:+|2.310393220092203|0.4673603826006573|2.31|137.0|19|1|sense L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|69|2|sense L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|69|2|sense MSMS UPN48_class_I_Rep_3 7 456.2413024902344 2 456.242012 910.469472 NaN NaN NaN NaN NaN NaN NaN 104.67 1 108.39 107.89 108.89 3.7192 0 0 0 0.40581 1 24712 24712 2.8892 0 1 48608 14487 30632 30646 56043 56043 0.01065575711152178 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 12.189 1 12.189 11.689 12.689 0 0 0 0 0.38417 1 50 50 0.094841 0.094841 1 48609 14320 30633 30647 56044 56044 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 13.352 1 13.352 12.852 13.852 0 0 0 0 0.38417 1 361 361 0.094841 0 1 48610 14320 30633 30647 56045 56045 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 20.223 1 20.223 19.723 20.723 0 0 0 0 0.38417 1 2065 2065 0.094841 0.094841 1 48611 14320 30633 30647 56046 56046 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 23.847 1 23.847 23.347 24.347 0 0 0 0 0.38417 1 3052 3052 0.094841 0 1 48612 14320 30633 30647 56047 56047 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.477 1 24.477 23.977 24.977 0 0 0 0 0.38417 1 3224 3224 0.094841 0 1 48613 14320 30633 30647 56048 56048 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.647 1 24.647 24.147 25.147 0 0 0 0 0.38417 1 3269 3269 0.094841 0 1 48614 14320 30633 30647 56049 56049 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2971496582031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.165 1 25.165 24.665 25.665 0 0 0 0 0.38417 1 3411 3411 0.094841 0 1 48615 14320 30633 30647 56050 56050 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.29 1 25.29 24.79 25.79 0 0 0 0 0.38417 1 3447 3447 0.094841 0 1 48616 14320 30633 30647 56051 56051 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.644 1 25.644 25.144 26.144 0 0 0 0 0.38417 1 3549 3549 0.094841 0 1 48617 14320 30633 30647 56052 56052 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.036 1 26.036 25.536 26.536 0 0 0 0 0.38417 1 3664 3664 0.094841 0 1 48618 14320 30633 30647 56053 56053 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2969970703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.228 1 26.228 25.728 26.728 0 0 0 0 0.38417 1 3718 3718 0.094841 0 1 48619 14320 30633 30647 56054 56054 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.313 1 26.313 25.813 26.813 0 0 0 0 0.38417 1 3743 3743 0.094841 0 1 48620 14320 30633 30647 56055 56055 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 27.277 1 27.277 26.777 27.777 0 0 0 0 0.38417 1 4028 4028 0.094841 0 1 48621 14320 30633 30647 56056 56056 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2969970703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.334 1 28.334 27.834 28.834 0 0 0 0 0.38417 1 4334 4334 0.094841 0 1 48622 14320 30633 30647 56057 56057 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.72 1 32.72 32.22 33.22 0 0 0 0 0.38417 1 5635 5635 0.45452 0.31463 1 48623 14320 30633 30647 56058 56058 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2591857910156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.429 1 33.429 32.929 33.929 0 0 0 0 0.38417 1 5846 5846 0.094841 0 1 48624 14320 30633 30647 56059 56059 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.938 1 33.938 33.438 34.438 0 0 0 0 0.38417 1 5999 5999 0.50596 0.34663 1 48625 14320 30633 30647 56060 56060 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 34.589 1 34.589 34.089 35.089 0 0 0 0 0.38417 1 6194 6194 0.094841 0 1 48626 14320 30633 30647 56061 56061 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 36.289 1 36.289 35.789 36.789 0 0 0 0 0.38417 1 6710 6710 0.094841 0 1 48627 14320 30633 30647 56062 56062 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 66.552 1 66.552 66.052 67.052 0 0 0 0 0.38417 1 15106 15106 0.094841 0 1 48628 14320 30633 30647 56063 56063 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2972412109375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 68.718 1 68.718 68.218 69.218 0 0 0 0 0.38417 1 15707 15707 0.094841 0 1 48629 14320 30633 30647 56064 56064 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 70.012 1 70.012 69.512 70.512 0 0 0 0 0.38417 1 16069 16069 0.094841 0 1 48630 14320 30633 30647 56065 56065 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.883 1 74.883 74.383 75.383 0 0 0 0 0.38417 1 17385 17385 0.094841 0 1 48631 14320 30633 30647 56066 56066 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2972106933594 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.49 1 76.49 75.99 76.99 0 0 0 0 0.38417 1 17845 17845 0.094841 0.094841 1 48632 14320 30633 30647 56067 56067 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.506 1 77.506 77.006 78.006 0 0 0 0 0.38417 1 18120 18120 0.094841 0 1 48633 14320 30633 30647 56068 56068 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.052 1 79.052 78.552 79.552 0 0 0 0 0.38417 1 18551 18551 0.094841 0 1 48634 14320 30633 30647 56069 56069 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.36 1 79.36 78.86 79.86 0 0 0 0 0.38417 1 18639 18639 0.094841 0 1 48635 14320 30633 30647 56070 56070 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 84.591 1 84.591 84.091 85.091 0 0 0 0 0.38417 1 20133 20133 0.094841 0 1 48636 14320 30633 30647 56071 56071 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 94.683 1 94.683 94.183 95.183 0 0 0 0 0.38417 1 22968 22968 0.094841 0 1 48637 14320 30633 30647 56072 56072 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 96.419 1 96.419 95.919 96.919 0 0 0 0 0.38417 1 23443 23443 0.094841 0 1 48638 14320 30633 30647 56073 56073 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 96.538 1 96.538 96.038 97.038 0 0 0 0 0.38417 1 23475 23475 0.094841 0 1 48639 14320 30633 30647 56074 56074 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 105.64 1 105.64 105.14 106.14 0 0 0 0 0.38417 1 25771 25771 0.094841 0.094841 1 48640 14320 30633 30647 56075 56075 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 112.9 1 112.9 112.4 113.4 0 0 0 0 0.38417 1 27881 27881 0.094841 0 1 48641 14320 30633 30647 56076 56076 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 113.57 1 113.57 113.07 114.07 0 0 0 0 0.38417 1 28053 28053 0.094841 0 1 48642 14320 30633 30647 56077 56077 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN46_class_I_Rep_3 1 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 115.56 1 115.56 115.06 116.06 0 0 0 0 0.38417 1 28585 28585 0.094841 0 1 48643 14320 30633 30647 56078 56078 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 20.992 1 24.636 24.136 25.136 3.6436 0 0 0 0.38417 1 2206 2206 0.094841 0.094841 1 48644 14320 30633 30647 56079 56079 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 21.3 1 24.944 24.444 25.444 3.6436 0 0 0 0.38417 1 2288 2288 0.094841 0 1 48645 14320 30633 30647 56080 56080 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.188 1 44.86 44.36 45.36 3.6719 0 0 0 0.38417 1 8244 8244 0.094841 0 1 48646 14320 30633 30647 56081 56081 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.289 1 44.961 44.461 45.461 3.6719 0 0 0 0.38417 1 8275 8275 0.094841 0 1 48647 14320 30633 30647 56082 56082 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.478 1 45.157 44.657 45.657 3.6792 0 0 0 0.38417 1 8333 8333 0.094841 0 1 48648 14320 30633 30647 56083 56083 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2972412109375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.822 1 47.517 47.017 48.017 3.6951 0 0 0 0.38417 1 9050 9050 0.094841 0 1 48649 14320 30633 30647 56084 56084 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.038 1 47.733 47.233 48.233 3.6951 0 0 0 0.38417 1 9117 9117 0.094841 0 1 48650 14320 30633 30647 56085 56085 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.213 1 47.908 47.408 48.408 3.6951 0 0 0 0.38417 1 9171 9171 0.094841 0 1 48651 14320 30633 30647 56086 56086 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.469 1 48.164 47.664 48.664 3.6951 0 0 0 0.38417 1 9249 9249 0.094841 0 1 48652 14320 30633 30647 56087 56087 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.126 1 48.826 48.326 49.326 3.6999 0 0 0 0.38417 1 9449 9449 0.094841 0 1 48653 14320 30633 30647 56088 56088 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 47.295 1 50.99 50.49 51.49 3.6951 0 0 0 0.38417 1 10113 10113 0.094841 0 1 48654 14320 30633 30647 56089 56089 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 60.158 1 63.557 63.057 64.057 3.3982 0 0 0 0.38417 1 14023 14023 0.094841 0 1 48655 14320 30633 30647 56090 56090 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.277 1 64.659 64.159 65.159 3.3815 0 0 0 0.38417 1 14358 14358 0.094841 0 1 48656 14320 30633 30647 56091 56091 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 63.424 1 66.783 66.283 67.283 3.3595 0 0 0 0.38417 1 15005 15005 0.094841 0 1 48657 14320 30633 30647 56092 56092 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 64.875 1 68.231 67.731 68.731 3.3557 0 0 0 0.38417 1 15437 15437 0.094841 0 1 48658 14320 30633 30647 56093 56093 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2972106933594 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 65.001 1 68.357 67.857 68.857 3.3557 0 0 0 0.38417 1 15475 15475 0.094841 0.094841 1 48659 14320 30633 30647 56094 56094 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 65.383 1 68.738 68.238 69.238 3.3557 0 0 0 0.38417 1 15592 15592 0.094841 0 1 48660 14320 30633 30647 56095 56095 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.804 1 71.167 70.667 71.667 3.3631 0 0 0 0.38417 1 16328 16328 0.094841 0 1 48661 14320 30633 30647 56096 56096 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.927 1 71.291 70.791 71.791 3.3646 0 0 0 0.38417 1 16366 16366 0.094841 0 1 48662 14320 30633 30647 56097 56097 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.766 1 76.146 75.646 76.646 3.3799 0 0 0 0.38417 1 17826 17826 0.094841 0 1 48663 14320 30633 30647 56098 56098 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.912 1 76.292 75.792 76.792 3.3799 0 0 0 0.38417 1 17871 17871 0.094841 0 1 48664 14320 30633 30647 56099 56099 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.103 1 76.489 75.989 76.989 3.3861 0 0 0 0.38417 1 17930 17930 0.094841 0 1 48665 14320 30633 30647 56100 56100 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.484 1 76.871 76.371 77.371 3.3861 0 0 0 0.38417 1 18046 18046 0.094841 0 1 48666 14320 30633 30647 56101 56101 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29718017578125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.842 1 77.228 76.728 77.728 3.3861 0 0 0 0.38417 1 18148 18148 0.094841 0 1 48667 14320 30633 30647 56102 56102 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.643 1 80.058 79.558 80.558 3.4149 0 0 0 0.38417 1 18975 18975 0.094841 0 1 48668 14320 30633 30647 56103 56103 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.502 1 80.931 80.431 81.431 3.4289 0 0 0 0.38417 1 19232 19232 0.094841 0 1 48669 14320 30633 30647 56104 56104 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.514 1 81.959 81.459 82.459 3.4456 0 0 0 0.38417 1 19523 19523 0.094841 0 1 48670 14320 30633 30647 56105 56105 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.046 1 82.492 81.992 82.992 3.4456 0 0 0 0.38417 1 19677 19677 0.094841 0.094841 1 48671 14320 30633 30647 56106 56106 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 87.874 1 91.531 91.031 92.031 3.6563 0 0 0 0.38417 1 21968 21968 0.094841 0 1 48672 14320 30633 30647 56107 56107 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 90.338 1 94.028 93.528 94.528 3.6899 0 0 0 0.38417 1 22574 22574 0.094841 0 1 48673 14320 30633 30647 56108 56108 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 19.867 1 23.263 22.763 23.763 3.3963 0 0 0 0.38417 1 1957 1957 0.094841 0 1 48674 14320 30633 30647 56109 56109 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 21.414 1 24.838 24.338 25.338 3.4241 0 0 0 0.38417 1 2389 2389 0.094841 0 1 48675 14320 30633 30647 56110 56110 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.586 1 30.08 29.58 30.58 3.4945 0 0 0 0.38417 1 3870 3870 0.094841 0 1 48676 14320 30633 30647 56111 56111 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 34.775 1 38.2 37.7 38.7 3.4253 0 0 0 0.38417 1 6331 6331 0.094841 0 1 48677 14320 30633 30647 56112 56112 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29718017578125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.43 1 47.786 47.286 48.286 3.3556 0 0 0 0.38417 1 9264 9264 0.094841 0 1 48678 14320 30633 30647 56113 56113 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.663 1 49.017 48.517 49.517 3.3534 0 0 0 0.38417 1 9644 9644 0.094841 0 1 48679 14320 30633 30647 56114 56114 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.744 1 55.077 54.577 55.577 3.3332 0 0 0 0.38417 1 11488 11488 0.094841 0 1 48680 14320 30633 30647 56115 56115 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.919 1 55.252 54.752 55.752 3.3332 0 0 0 0.38417 1 11542 11542 0.094841 0 1 48681 14320 30633 30647 56116 56116 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 52.736 1 56.066 55.566 56.566 3.3301 0 0 0 0.38417 1 11784 11784 0.094841 0 1 48682 14320 30633 30647 56117 56117 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2981262207031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 52.822 1 56.149 55.649 56.649 3.3266 0 0 0 0.38417 1 11810 11810 0.45452 0.35968 1 48683 14320 30633 30647 56118 56118 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 53.809 1 57.135 56.635 57.635 3.3266 0 0 0 0.38417 1 12114 12114 0.094841 0 1 48684 14320 30633 30647 56119 56119 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 53.947 1 57.266 56.766 57.766 3.3187 0 0 0 0.38417 1 12157 12157 0.50596 0.34663 1 48685 14320 30633 30647 56120 56120 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 54.113 1 57.431 56.931 57.931 3.3187 0 0 0 0.38417 1 12207 12207 0.094841 0 1 48686 14320 30633 30647 56121 56121 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 54.775 1 58.094 57.594 58.594 3.3187 0 0 0 0.38417 1 12411 12411 0.094841 0 1 48687 14320 30633 30647 56122 56122 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 57.368 1 60.659 60.159 61.159 3.2912 0 0 0 0.38417 1 13204 13204 0.094841 0 1 48688 14320 30633 30647 56123 56123 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 57.465 1 60.756 60.256 61.256 3.2912 0 0 0 0.38417 1 13233 13233 0.094841 0 1 48689 14320 30633 30647 56124 56124 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 59.587 1 62.86 62.36 63.36 3.2731 0 0 0 0.38417 1 13881 13881 0.094841 0 1 48690 14320 30633 30647 56125 56125 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.24 1 64.505 64.005 65.005 3.2654 0 0 0 0.38417 1 14381 14381 0.094841 0 1 48691 14320 30633 30647 56126 56126 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.289 1 64.555 64.055 65.055 3.2654 0 0 0 0.38417 1 14397 14397 0.094841 0.094841 1 48692 14320 30633 30647 56127 56127 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.595 1 65.85 65.35 66.35 3.2558 0 0 0 0.38417 1 14792 14792 0.094841 0 1 48693 14320 30633 30647 56128 56128 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.811 1 66.067 65.567 66.567 3.2558 0 0 0 0.38417 1 14859 14859 0.094841 0 1 48694 14320 30633 30647 56129 56129 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 63.868 1 67.124 66.624 67.624 3.2556 0 0 0 0.38417 1 15177 15177 0.094841 0 1 48695 14320 30633 30647 56130 56130 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2972412109375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 64.264 1 67.52 67.02 68.02 3.2556 0 0 0 0.38417 1 15298 15298 0.094841 0 1 48696 14320 30633 30647 56131 56131 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 64.506 1 67.761 67.261 68.261 3.2556 0 0 0 0.38417 1 15371 15371 0.094841 0 1 48697 14320 30633 30647 56132 56132 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2972106933594 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 64.637 1 67.893 67.393 68.393 3.2556 0 0 0 0.38417 1 15412 15412 0.094841 0 1 48698 14320 30633 30647 56133 56133 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 65.244 1 68.499 67.999 68.999 3.2556 0 0 0 0.38417 1 15598 15598 0.094841 0.011491 1 48699 14320 30633 30647 56134 56134 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 65.412 1 68.668 68.168 69.168 3.2556 0 0 0 0.38417 1 15648 15648 0.094841 0 1 48700 14320 30633 30647 56135 56135 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 65.56 1 68.816 68.316 69.316 3.2556 0 0 0 0.38417 1 15694 15694 0.094841 0 1 48701 14320 30633 30647 56136 56136 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.286 1 70.549 70.049 71.049 3.2636 0 0 0 0.38417 1 16218 16218 0.094841 0 1 48702 14320 30633 30647 56137 56137 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2981262207031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.914 1 71.183 70.683 71.683 3.2696 0 0 0 0.38417 1 16404 16404 0.094841 0.011491 1 48703 14320 30633 30647 56138 56138 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 69.569 1 72.845 72.345 73.345 3.2761 0 0 0 0.38417 1 16902 16902 0.094841 0 1 48704 14320 30633 30647 56139 56139 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 70.434 1 73.716 73.216 74.216 3.2828 0 0 0 0.38417 1 17161 17161 0.094841 0.094841 1 48705 14320 30633 30647 56140 56140 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.659 1 75.956 75.456 76.456 3.2971 0 0 0 0.38417 1 17823 17823 0.094841 0 1 48706 14320 30633 30647 56141 56141 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2970886230469 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.092 1 76.39 75.89 76.89 3.2971 0 0 0 0.38417 1 17952 17952 0.094841 0 1 48707 14320 30633 30647 56142 56142 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.377 1 76.682 76.182 77.182 3.3048 0 0 0 0.38417 1 18038 18038 0.094841 0 1 48708 14320 30633 30647 56143 56143 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.419 1 76.724 76.224 77.224 3.3048 0 0 0 0.38417 1 18050 18050 0.094841 0.094841 1 48709 14320 30633 30647 56144 56144 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.705 1 77.009 76.509 77.509 3.3048 0 0 0 0.38417 1 18137 18137 0.094841 0 1 48710 14320 30633 30647 56145 56145 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.164 1 77.469 76.969 77.969 3.3048 0 0 0 0.38417 1 18265 18265 0.094841 0 1 48711 14320 30633 30647 56146 56146 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.521 1 79.843 79.343 80.343 3.3216 0 0 0 0.38417 1 18946 18946 0.094841 0 1 48712 14320 30633 30647 56147 56147 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2979431152344 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.525 1 80.856 80.356 81.356 3.3315 0 0 0 0.38417 1 19234 19234 0.094841 0 1 48713 14320 30633 30647 56148 56148 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.331 1 81.673 81.173 82.173 3.3428 0 0 0 0.38417 1 19457 19457 0.094841 0 1 48714 14320 30633 30647 56149 56149 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.485 1 81.828 81.328 82.328 3.3428 0 0 0 0.38417 1 19499 19499 0.094841 0 1 48715 14320 30633 30647 56150 56150 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.472 1 82.827 82.327 83.327 3.3554 0 0 0 0.38417 1 19785 19785 0.094841 0 1 48716 14320 30633 30647 56151 56151 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 86.953 1 90.394 89.894 90.894 3.4407 0 0 0 0.38417 1 21620 21620 0.094841 0 1 48717 14320 30633 30647 56152 56152 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 87.648 1 91.095 90.595 91.595 3.4471 0 0 0 0.38417 1 21787 21787 0.094841 0 1 48718 14320 30633 30647 56153 56153 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.29718017578125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 88.245 1 91.692 91.192 92.192 3.4471 0 0 0 0.38417 1 21946 21946 0.094841 0 1 48719 14320 30633 30647 56154 56154 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 114.51 1 118.02 117.52 118.52 3.5039 0 0 0 0.38417 1 27889 27889 0.094841 0.011491 1 48720 14320 30633 30647 56155 56155 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_2 3 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 119.87 1 123.35 122.85 123.85 3.4793 0 0 0 0.38417 1 29377 29377 0.45452 0.31463 1 48721 14320 30633 30647 56156 56156 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 18.238 1 21.593 21.093 22.093 3.3545 0 0 0 0.38417 1 1481 1481 0.094841 0 1 48722 14320 30633 30647 56157 56157 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2979431152344 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 18.643 1 21.997 21.497 22.497 3.3545 0 0 0 0.38417 1 1590 1590 0.45452 0.31463 1 48723 14320 30633 30647 56158 56158 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.757 1 32.09 31.59 32.59 3.3337 0 0 0 0.38417 1 4555 4555 0.094841 0 1 48724 14320 30633 30647 56159 56159 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.414 1 32.738 32.238 33.238 3.3235 0 0 0 0.38417 1 4752 4752 0.094841 0.011491 1 48725 14320 30633 30647 56160 56160 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 50.552 1 53.779 53.279 54.279 3.2262 0 0 0 0.38417 1 11178 11178 0.094841 0 1 48726 14320 30633 30647 56161 56161 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 50.843 1 54.059 53.559 54.559 3.2163 0 0 0 0.38417 1 11267 11267 0.094841 0 1 48727 14320 30633 30647 56162 56162 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.153 1 54.369 53.869 54.869 3.2163 0 0 0 0.38417 1 11360 11360 0.094841 0 1 48728 14320 30633 30647 56163 56163 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.511 1 54.727 54.227 55.227 3.2163 0 0 0 0.38417 1 11470 11470 0.094841 0 1 48729 14320 30633 30647 56164 56164 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.995 1 55.2 54.7 55.7 3.2055 0 0 0 0.38417 1 11618 11618 0.094841 0 1 48730 14320 30633 30647 56165 56165 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2970886230469 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 52.94 1 56.134 55.634 56.634 3.1948 0 0 0 0.38417 1 11901 11901 0.094841 0 1 48731 14320 30633 30647 56166 56166 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 57.765 1 60.933 60.433 61.433 3.1681 0 0 0 0.38417 1 13372 13372 0.094841 0 1 48732 14320 30633 30647 56167 56167 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2972412109375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 59.287 1 62.452 61.952 62.952 3.1651 0 0 0 0.38417 1 13841 13841 0.094841 0 1 48733 14320 30633 30647 56168 56168 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.213 1 64.378 63.878 64.878 3.1651 0 0 0 0.38417 1 14423 14423 0.094841 0 1 48734 14320 30633 30647 56169 56169 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2969055175781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.366 1 64.531 64.031 65.031 3.1651 0 0 0 0.38417 1 14471 14471 0.094841 0 1 48735 14320 30633 30647 56170 56170 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.667 1 64.834 64.334 65.334 3.1667 0 0 0 0.38417 1 14564 14564 0.094841 0 1 48736 14320 30633 30647 56171 56171 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.712 1 65.881 65.381 66.381 3.1698 0 0 0 0.38417 1 14887 14887 0.094841 0 1 48737 14320 30633 30647 56172 56172 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.928 1 66.098 65.598 66.598 3.1698 0 0 0 0.38417 1 14953 14953 0.094841 0 1 48738 14320 30633 30647 56173 56173 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29803466796875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 63.245 1 66.414 65.914 66.914 3.1698 0 0 0 0.38417 1 15049 15049 0.094841 0 1 48739 14320 30633 30647 56174 56174 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 66.457 1 69.642 69.142 70.142 3.1853 0 0 0 0.38417 1 16030 16030 0.094841 0 1 48740 14320 30633 30647 56175 56175 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29718017578125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.284 1 70.475 69.975 70.975 3.1914 0 0 0 0.38417 1 16281 16281 0.094841 0 1 48741 14320 30633 30647 56176 56176 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 68.349 1 71.546 71.046 72.046 3.1977 0 0 0 0.38417 1 16602 16602 0.094841 0 1 48742 14320 30633 30647 56177 56177 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2970275878906 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 69.917 1 73.122 72.622 73.622 3.2044 0 0 0 0.38417 1 17075 17075 0.094841 0 1 48743 14320 30633 30647 56178 56178 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.906 1 76.134 75.634 76.634 3.2271 0 0 0 0.38417 1 17974 17974 0.094841 0 1 48744 14320 30633 30647 56179 56179 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.058 1 76.285 75.785 76.785 3.2271 0 0 0 0.38417 1 18019 18019 0.094841 0 1 48745 14320 30633 30647 56180 56180 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.906 1 77.142 76.642 77.642 3.2363 0 0 0 0.38417 1 18274 18274 0.094841 0 1 48746 14320 30633 30647 56181 56181 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.037 1 77.273 76.773 77.773 3.2363 0 0 0 0.38417 1 18310 18310 0.094841 0 1 48747 14320 30633 30647 56182 56182 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.19 1 77.426 76.926 77.926 3.2363 0 0 0 0.38417 1 18353 18353 0.094841 0 1 48748 14320 30633 30647 56183 56183 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.714 1 79.983 79.483 80.483 3.269 0 0 0 0.38417 1 19081 19081 0.094841 0 1 48749 14320 30633 30647 56184 56184 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.893 1 80.162 79.662 80.662 3.269 0 0 0 0.38417 1 19132 19132 0.094841 0.011491 1 48750 14320 30633 30647 56185 56185 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.023 1 80.292 79.792 80.792 3.269 0 0 0 0.38417 1 19165 19165 0.094841 0 1 48751 14320 30633 30647 56186 56186 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.211 1 80.48 79.98 80.98 3.269 0 0 0 0.38417 1 19218 19218 0.094841 0 1 48752 14320 30633 30647 56187 56187 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.339 1 80.608 80.108 81.108 3.269 0 0 0 0.38417 1 19255 19255 0.094841 0 1 48753 14320 30633 30647 56188 56188 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.297119140625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 85.535 1 88.907 88.407 89.407 3.3716 0 0 0 0.38417 1 21428 21428 0.094841 0 1 48754 14320 30633 30647 56189 56189 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2970886230469 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 86.642 1 90.022 89.522 90.522 3.3801 0 0 0 0.38417 1 21716 21716 0.094841 0 1 48755 14320 30633 30647 56190 56190 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 87.358 1 90.738 90.238 91.238 3.3801 0 0 0 0.38417 1 21887 21887 0.094841 0 1 48756 14320 30633 30647 56191 56191 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 87.692 1 91.079 90.579 91.579 3.3873 0 0 0 0.38417 1 21981 21981 0.094841 0 1 48757 14320 30633 30647 56192 56192 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 90.038 1 93.435 92.935 93.935 3.3976 0 0 0 0.38417 1 22569 22569 0.094841 0 1 48758 14320 30633 30647 56193 56193 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 90.788 1 94.189 93.689 94.689 3.401 0 0 0 0.38417 1 22742 22742 0.094841 0 1 48759 14320 30633 30647 56194 56194 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 98.108 1 101.53 101.03 102.03 3.4216 0 0 0 0.38417 1 24300 24300 0.094841 0.094841 1 48760 14320 30633 30647 56195 56195 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 98.32 1 101.75 101.25 102.25 3.4328 0 0 0 0.38417 1 24352 24352 0.094841 0 1 48761 14320 30633 30647 56196 56196 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 98.538 1 101.97 101.47 102.47 3.4328 0 0 0 0.38417 1 24402 24402 0.094841 0.011491 1 48762 14320 30633 30647 56197 56197 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 110.8 1 114.33 113.83 114.83 3.529 0 0 0 0.38417 1 27186 27186 0.094841 0 1 48763 14320 30633 30647 56198 56198 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 117.14 1 120.59 120.09 121.09 3.4425 0 0 0 0.38417 1 28848 28848 0.094841 0 1 48764 14320 30633 30647 56199 56199 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN47_class_I_Rep_3 4 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 119.27 1 122.68 122.18 123.18 3.4157 0 0 0 0.38417 1 29448 29448 0.094841 0.094841 1 48765 14320 30633 30647 56200 56200 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.297119140625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 23.589 1 27.155 26.655 27.655 3.5655 0 0 0 0.38417 1 2482 2482 0.094841 0.094841 1 48766 14320 30633 30647 56201 56201 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.685 1 29.252 28.752 29.752 3.5667 0 0 0 0.38417 1 3032 3032 0.094841 0 1 48767 14320 30633 30647 56202 56202 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.998 1 29.565 29.065 30.065 3.5667 0 0 0 0.38417 1 3118 3118 0.094841 0.011491 1 48768 14320 30633 30647 56203 56203 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2969055175781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.026 1 33.568 33.068 34.068 3.542 0 0 0 0.38417 1 4256 4256 0.094841 0 1 48769 14320 30633 30647 56204 56204 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.342 1 33.884 33.384 34.384 3.542 0 0 0 0.38417 1 4341 4341 0.094841 0.094841 1 48770 14320 30633 30647 56205 56205 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.74 1 34.282 33.782 34.782 3.542 0 0 0 0.38417 1 4455 4455 0.094841 0 1 48771 14320 30633 30647 56206 56206 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.249 1 34.783 34.283 35.283 3.5342 0 0 0 0.38417 1 4599 4599 0.094841 0 1 48772 14320 30633 30647 56207 56207 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.461 1 34.995 34.495 35.495 3.5342 0 0 0 0.38417 1 4657 4657 0.094841 0 1 48773 14320 30633 30647 56208 56208 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.603 1 35.137 34.637 35.637 3.5342 0 0 0 0.38417 1 4696 4696 0.094841 0 1 48774 14320 30633 30647 56209 56209 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.934 1 35.468 34.968 35.968 3.5342 0 0 0 0.38417 1 4789 4789 0.094841 0 1 48775 14320 30633 30647 56210 56210 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.308 1 35.835 35.335 36.335 3.5266 0 0 0 0.38417 1 4898 4898 0.094841 0 1 48776 14320 30633 30647 56211 56211 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.742 1 36.269 35.769 36.769 3.5266 0 0 0 0.38417 1 5016 5016 0.094841 0 1 48777 14320 30633 30647 56212 56212 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.664 1 45.17 44.67 45.67 3.506 0 0 0 0.38417 1 7620 7620 0.094841 0 1 48778 14320 30633 30647 56213 56213 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.276611328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.974 1 45.482 44.982 45.982 3.5079 0 0 0 0.38417 1 7711 7711 0.094841 0 1 48779 14320 30633 30647 56214 56214 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 42.059 1 45.567 45.067 46.067 3.5079 0 0 0 0.38417 1 7737 7737 0.094841 0 1 48780 14320 30633 30647 56215 56215 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 42.32 1 45.828 45.328 46.328 3.5079 0 0 0 0.38417 1 7813 7813 0.094841 0 1 48781 14320 30633 30647 56216 56216 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 42.452 1 45.96 45.46 46.46 3.5079 0 0 0 0.38417 1 7853 7853 0.094841 0 1 48782 14320 30633 30647 56217 56217 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.39 1 46.9 46.4 47.4 3.5103 0 0 0 0.38417 1 8139 8139 0.094841 0 1 48783 14320 30633 30647 56218 56218 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2972412109375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.916 1 48.429 47.929 48.929 3.5132 0 0 0 0.38417 1 8605 8605 0.50596 0.34663 1 48784 14320 30633 30647 56219 56219 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.279 1 48.795 48.295 49.295 3.5162 0 0 0 0.38417 1 8715 8715 0.50596 0 1 48785 14320 30633 30647 56220 56220 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.429 1 48.945 48.445 49.445 3.5162 0 0 0 0.38417 1 8759 8759 0.094841 0 1 48786 14320 30633 30647 56221 56221 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29705810546875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.77 1 49.286 48.786 49.786 3.5162 0 0 0 0.38417 1 8863 8863 0.094841 0 1 48787 14320 30633 30647 56222 56222 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2978820800781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.173 1 54.698 54.198 55.198 3.5246 0 0 0 0.38417 1 10527 10527 0.094841 0 1 48788 14320 30633 30647 56223 56223 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.386 1 64.854 64.354 65.354 3.4678 0 0 0 0.38417 1 13652 13652 0.094841 0 1 48789 14320 30633 30647 56224 56224 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2967529296875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.586 1 65.054 64.554 65.554 3.4678 0 0 0 0.38417 1 13714 13714 0.50596 0.051438 1 48790 14320 30633 30647 56225 56225 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2981872558594 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 66.594 1 70.045 69.545 70.545 3.4516 0 0 0 0.38417 1 15240 15240 0.094841 0.011491 1 48791 14320 30633 30647 56226 56226 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 66.733 1 70.185 69.685 70.685 3.4516 0 0 0 0.38417 1 15282 15282 0.094841 0 1 48792 14320 30633 30647 56227 56227 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2978820800781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 66.951 1 70.402 69.902 70.902 3.4516 0 0 0 0.38417 1 15348 15348 0.094841 0 1 48793 14320 30633 30647 56228 56228 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.295 1 70.747 70.247 71.247 3.4516 0 0 0 0.38417 1 15455 15455 0.094841 0 1 48794 14320 30633 30647 56229 56229 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 68.898 1 72.352 71.852 72.852 3.4548 0 0 0 0.38417 1 15942 15942 0.094841 0 1 48795 14320 30633 30647 56230 56230 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.484 1 75.957 75.457 76.457 3.4732 0 0 0 0.38417 1 17014 17014 0.094841 0.094841 1 48796 14320 30633 30647 56231 56231 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29815673828125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.017 1 76.499 75.999 76.999 3.4812 0 0 0 0.38417 1 17179 17179 0.094841 0 1 48797 14320 30633 30647 56232 56232 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 73.768 1 77.249 76.749 77.749 3.4812 0 0 0 0.38417 1 17402 17402 0.094841 0 1 48798 14320 30633 30647 56233 56233 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.078 1 77.56 77.06 78.06 3.4823 0 0 0 0.38417 1 17491 17491 0.094841 0.011491 1 48799 14320 30633 30647 56234 56234 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.361 1 79.872 79.372 80.372 3.5102 0 0 0 0.38417 1 18136 18136 0.094841 0 1 48800 14320 30633 30647 56235 56235 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.726 1 80.236 79.736 80.736 3.5102 0 0 0 0.38417 1 18228 18228 0.094841 0 1 48801 14320 30633 30647 56236 56236 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2979431152344 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 83.445 1 87.033 86.533 87.533 3.5871 0 0 0 0.38417 1 19956 19956 0.094841 0 1 48802 14320 30633 30647 56237 56237 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 86.703 1 90.316 89.816 90.816 3.613 0 0 0 0.38417 1 20775 20775 0.094841 0.094841 1 48803 14320 30633 30647 56238 56238 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 97.777 1 101.39 100.89 101.89 3.6088 0 0 0 0.38417 1 23585 23585 0.094841 0 1 48804 14320 30633 30647 56239 56239 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 101.36 1 104.97 104.47 105.47 3.612 0 0 0 0.38417 1 24468 24468 0.094841 0.094841 1 48805 14320 30633 30647 56240 56240 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 18.475 1 22.126 21.626 22.626 3.6509 0 0 0 0.38417 1 1242 1242 0.094841 0.094841 1 48806 14320 30633 30647 56241 56241 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 18.917 1 22.568 22.068 23.068 3.6509 0 0 0 0.38417 1 1348 1348 0.094841 0 1 48807 14320 30633 30647 56242 56242 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 19.066 1 22.717 22.217 23.217 3.6509 0 0 0 0.38417 1 1388 1388 0.094841 0 1 48808 14320 30633 30647 56243 56243 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 22.869 1 26.512 26.012 27.012 3.6432 0 0 0 0.38417 1 2402 2402 0.094841 0 1 48809 14320 30633 30647 56244 56244 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 23.155 1 26.798 26.298 27.298 3.6432 0 0 0 0.38417 1 2477 2477 0.094841 0 1 48810 14320 30633 30647 56245 56245 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 23.317 1 26.96 26.46 27.46 3.6432 0 0 0 0.38417 1 2524 2524 0.094841 0 1 48811 14320 30633 30647 56246 56246 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.369 1 28.008 27.508 28.508 3.6397 0 0 0 0.38417 1 2816 2816 0.094841 0 1 48812 14320 30633 30647 56247 56247 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.435 1 28.075 27.575 28.575 3.6397 0 0 0 0.38417 1 2835 2835 0.094841 0 1 48813 14320 30633 30647 56248 56248 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.747 1 28.383 27.883 28.883 3.6363 0 0 0 0.38417 1 2915 2915 0.094841 0.094841 1 48814 14320 30633 30647 56249 56249 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.313 1 28.95 28.45 29.45 3.6363 0 0 0 0.38417 1 3066 3066 0.094841 0.011491 1 48815 14320 30633 30647 56250 56250 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.833 1 29.466 28.966 29.966 3.6332 0 0 0 0.38417 1 3201 3201 0.094841 0 1 48816 14320 30633 30647 56251 56251 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.955 1 29.588 29.088 30.088 3.6332 0 0 0 0.38417 1 3236 3236 0.094841 0 1 48817 14320 30633 30647 56252 56252 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.318 1 29.952 29.452 30.452 3.6332 0 0 0 0.38417 1 3334 3334 0.094841 0 1 48818 14320 30633 30647 56253 56253 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.439 1 30.072 29.572 30.572 3.6332 0 0 0 0.38417 1 3366 3366 0.094841 0.094841 1 48819 14320 30633 30647 56254 56254 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.73 1 30.362 29.862 30.862 3.6329 0 0 0 0.38417 1 3445 3445 0.094841 0 1 48820 14320 30633 30647 56255 56255 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 27.692 1 31.323 30.823 31.823 3.6311 0 0 0 0.38417 1 3706 3706 0.094841 0.011491 1 48821 14320 30633 30647 56256 56256 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.322 1 32.954 32.454 33.454 3.6316 0 0 0 0.38417 1 4150 4150 0.094841 0 1 48822 14320 30633 30647 56257 56257 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.22 1 34.861 34.361 35.361 3.641 0 0 0 0.38417 1 4670 4670 0.094841 0 1 48823 14320 30633 30647 56258 56258 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.413 1 36.062 35.562 36.562 3.6497 0 0 0 0.38417 1 5004 5004 0.094841 0 1 48824 14320 30633 30647 56259 56259 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.92 1 36.57 36.07 37.07 3.6497 0 0 0 0.38417 1 5139 5139 0.094841 0 1 48825 14320 30633 30647 56260 56260 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 34.318 1 37.991 37.491 38.491 3.6735 0 0 0 0.38417 1 5516 5516 0.094841 0 1 48826 14320 30633 30647 56261 56261 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 39.961 1 43.702 43.202 44.202 3.7413 0 0 0 0.38417 1 7148 7148 0.094841 0 1 48827 14320 30633 30647 56262 56262 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.089 1 44.839 44.339 45.339 3.7508 0 0 0 0.38417 1 7470 7470 0.094841 0 1 48828 14320 30633 30647 56263 56263 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 42.005 1 45.763 45.263 46.263 3.7579 0 0 0 0.38417 1 7727 7727 0.094841 0 1 48829 14320 30633 30647 56264 56264 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 42.229 1 45.987 45.487 46.487 3.7579 0 0 0 0.38417 1 7793 7793 0.094841 0 1 48830 14320 30633 30647 56265 56265 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.084 1 46.845 46.345 47.345 3.7617 0 0 0 0.38417 1 8055 8055 0.094841 0 1 48831 14320 30633 30647 56266 56266 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.112 1 46.874 46.374 47.374 3.7617 0 0 0 0.38417 1 8063 8063 0.094841 0 1 48832 14320 30633 30647 56267 56267 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.769 1 47.531 47.031 48.031 3.7617 0 0 0 0.38417 1 8265 8265 0.094841 0 1 48833 14320 30633 30647 56268 56268 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2980041503906 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.983 1 48.745 48.245 49.245 3.7617 0 0 0 0.38417 1 8637 8637 0.50596 0 1 48834 14320 30633 30647 56269 56269 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 60.955 1 64.433 63.933 64.933 3.4785 0 0 0 0.38417 1 13500 13500 0.094841 0 1 48835 14320 30633 30647 56270 56270 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.745 1 65.219 64.719 65.719 3.4738 0 0 0 0.38417 1 13742 13742 0.45452 0.31463 1 48836 14320 30633 30647 56271 56271 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 63.837 1 67.311 66.811 67.811 3.4743 0 0 0 0.38417 1 14384 14384 0.094841 0 1 48837 14320 30633 30647 56272 56272 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.407 1 70.904 70.404 71.404 3.4964 0 0 0 0.38417 1 15477 15477 0.094841 0 1 48838 14320 30633 30647 56273 56273 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.118 1 75.669 75.169 76.169 3.5505 0 0 0 0.38417 1 16862 16862 0.094841 0 1 48839 14320 30633 30647 56274 56274 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 72.427 1 75.991 75.491 76.491 3.5645 0 0 0 0.38417 1 16950 16950 0.094841 0 1 48840 14320 30633 30647 56275 56275 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2981262207031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.346 1 77.93 77.43 78.43 3.5834 0 0 0 0.38417 1 17491 17491 0.094841 0 1 48841 14320 30633 30647 56276 56276 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.094 1 81.716 81.216 82.216 3.6222 0 0 0 0.38417 1 18519 18519 0.094841 0 1 48842 14320 30633 30647 56277 56277 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 84.756 1 88.45 87.95 88.95 3.6937 0 0 0 0.38417 1 20164 20164 0.094841 0 1 48843 14320 30633 30647 56278 56278 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 86.649 1 90.366 89.866 90.866 3.7171 0 0 0 0.38417 1 20627 20627 0.094841 0 1 48844 14320 30633 30647 56279 56279 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 87.288 1 91.005 90.505 91.505 3.7171 0 0 0 0.38417 1 20766 20766 0.094841 0.094841 1 48845 14320 30633 30647 56280 56280 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 95.459 1 99.239 98.739 99.739 3.7804 0 0 0 0.38417 1 22686 22686 0.094841 0 1 48846 14320 30633 30647 56281 56281 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 96.983 1 100.76 100.26 101.26 3.7804 0 0 0 0.38417 1 23046 23046 0.094841 0 1 48847 14320 30633 30647 56282 56282 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 111.08 1 114.75 114.25 115.25 3.669 0 0 0 0.38417 1 26419 26419 0.094841 0 1 48848 14320 30633 30647 56283 56283 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 112.49 1 116.16 115.66 116.66 3.6648 0 0 0 0.38417 1 26804 26804 0.094841 0 1 48849 14320 30633 30647 56284 56284 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 113.47 1 117.14 116.64 117.64 3.663 0 0 0 0.38417 1 27085 27085 0.094841 0 1 48850 14320 30633 30647 56285 56285 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 114.84 1 118.5 118 119 3.6616 0 0 0 0.38417 1 27466 27466 0.094841 0.094841 1 48851 14320 30633 30647 56286 56286 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 115.83 1 119.49 118.99 119.99 3.6607 0 0 0 0.38417 1 27733 27733 0.094841 0 1 48852 14320 30633 30647 56287 56287 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 116.47 1 120.13 119.63 120.63 3.6607 0 0 0 0.38417 1 27897 27897 0.094841 0 1 48853 14320 30633 30647 56288 56288 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2978820800781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 116.91 1 120.57 120.07 121.07 3.6607 0 0 0 0.38417 1 28010 28010 0.094841 0 1 48854 14320 30633 30647 56289 56289 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_2 6 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 118.06 1 121.73 121.23 122.23 3.6627 0 0 0 0.38417 1 28299 28299 0.094841 0 1 48855 14320 30633 30647 56290 56290 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 18.971 1 22.559 22.059 23.059 3.5874 0 0 0 0.38417 1 1349 1349 0.094841 0.094841 1 48856 14320 30633 30647 56291 56291 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 19.411 1 23.033 22.533 23.533 3.6215 0 0 0 0.38417 1 1459 1459 0.094841 0.094841 1 48857 14320 30633 30647 56292 56292 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 20.069 1 23.691 23.191 24.191 3.6215 0 0 0 0.38417 1 1638 1638 0.094841 0 1 48858 14320 30633 30647 56293 56293 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2975769042969 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 20.251 1 23.872 23.372 24.372 3.6215 0 0 0 0.38417 1 1686 1686 0.094841 0.094841 1 48859 14320 30633 30647 56294 56294 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 20.525 1 24.191 23.691 24.691 3.6667 0 0 0 0.38417 1 1763 1763 0.094841 0 1 48860 14320 30633 30647 56295 56295 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 22.126 1 25.841 25.341 26.341 3.7144 0 0 0 0.38417 1 2209 2209 0.094841 0 1 48861 14320 30633 30647 56296 56296 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 22.561 1 26.311 25.811 26.811 3.7507 0 0 0 0.38417 1 2321 2321 0.094841 0 1 48862 14320 30633 30647 56297 56297 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2970886230469 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 22.694 1 26.445 25.945 26.945 3.7507 0 0 0 0.38417 1 2356 2356 0.094841 0 1 48863 14320 30633 30647 56298 56298 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.384 1 28.153 27.653 28.653 3.769 0 0 0 0.38417 1 2813 2813 0.094841 0 1 48864 14320 30633 30647 56299 56299 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.188 1 28.957 28.457 29.457 3.769 0 0 0 0.38417 1 3028 3028 0.08335 0.08335 1 48865 14320 30633 30647 56300 56300 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.497 1 30.263 29.763 30.763 3.7663 0 0 0 0.38417 1 3362 3362 0.094841 0 1 48866 14320 30633 30647 56301 56301 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.497 1 33.225 32.725 33.725 3.7286 0 0 0 0.38417 1 4142 4142 0.094841 0 1 48867 14320 30633 30647 56302 56302 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.746 1 33.474 32.974 33.974 3.7286 0 0 0 0.38417 1 4207 4207 0.094841 0 1 48868 14320 30633 30647 56303 56303 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.891 1 33.619 33.119 34.119 3.7286 0 0 0 0.38417 1 4246 4246 0.094841 0.011491 1 48869 14320 30633 30647 56304 56304 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.433 1 34.147 33.647 34.647 3.7146 0 0 0 0.38417 1 4389 4389 0.094841 0.011491 1 48870 14320 30633 30647 56305 56305 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.881 1 34.596 34.096 35.096 3.7146 0 0 0 0.38417 1 4504 4504 0.094841 0 1 48871 14320 30633 30647 56306 56306 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.537 1 35.239 34.739 35.739 3.7015 0 0 0 0.38417 1 4682 4682 0.094841 0 1 48872 14320 30633 30647 56307 56307 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 31.669 1 35.37 34.87 35.87 3.7015 0 0 0 0.38417 1 4718 4718 0.094841 0 1 48873 14320 30633 30647 56308 56308 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.3 1 35.99 35.49 36.49 3.6896 0 0 0 0.38417 1 4890 4890 0.094841 0.011491 1 48874 14320 30633 30647 56309 56309 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29736328125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.502 1 36.191 35.691 36.691 3.6896 0 0 0 0.38417 1 4948 4948 0.094841 0.094841 1 48875 14320 30633 30647 56310 56310 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 32.55 1 36.239 35.739 36.739 3.6896 0 0 0 0.38417 1 4962 4962 0.094841 0 1 48876 14320 30633 30647 56311 56311 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.093 1 36.783 36.283 37.283 3.6896 0 0 0 0.38417 1 5103 5103 0.094841 0 1 48877 14320 30633 30647 56312 56312 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.343 1 37.033 36.533 37.533 3.6896 0 0 0 0.38417 1 5171 5171 0.094841 0 1 48878 14320 30633 30647 56313 56313 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.927 1 37.607 37.107 38.107 3.6797 0 0 0 0.38417 1 5336 5336 0.094841 0 1 48879 14320 30633 30647 56314 56314 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 34.096 1 37.775 37.275 38.275 3.6797 0 0 0 0.38417 1 5377 5377 0.094841 0 1 48880 14320 30633 30647 56315 56315 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.334 1 44.98 44.48 45.48 3.6458 0 0 0 0.38417 1 7454 7454 0.094841 0 1 48881 14320 30633 30647 56316 56316 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.487 1 45.133 44.633 45.633 3.6458 0 0 0 0.38417 1 7499 7499 0.094841 0 1 48882 14320 30633 30647 56317 56317 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.615 1 45.261 44.761 45.761 3.6458 0 0 0 0.38417 1 7537 7537 1.3296 0.82369 1 48883 14320 30633 30647 56318 56318 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 41.793 1 45.438 44.938 45.938 3.6458 0 0 0 0.38417 1 7589 7589 0.094841 0 1 48884 14320 30633 30647 56319 56319 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.341 1 46.979 46.479 47.479 3.6385 0 0 0 0.38417 1 8053 8053 0.094841 0 1 48885 14320 30633 30647 56320 56320 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 50.993 1 54.604 54.104 55.104 3.6105 0 0 0 0.38417 1 10404 10404 0.094841 0 1 48886 14320 30633 30647 56321 56321 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.709 1 65.22 64.72 65.72 3.5104 0 0 0 0.38417 1 13659 13659 0.50596 0.41111 1 48887 14320 30633 30647 56322 56322 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29779052734375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 61.73 1 65.241 64.741 65.741 3.5104 0 0 0 0.38417 1 13666 13666 0.094841 0 1 48888 14320 30633 30647 56323 56323 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.251 1 70.758 70.258 71.258 3.5077 0 0 0 0.38417 1 15339 15339 0.094841 0 1 48889 14320 30633 30647 56324 56324 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 67.518 1 71.026 70.526 71.526 3.5077 0 0 0 0.38417 1 15418 15418 0.094841 0 1 48890 14320 30633 30647 56325 56325 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 70.153 1 73.665 73.165 74.165 3.5128 0 0 0 0.38417 1 16213 16213 0.50596 0.34663 1 48891 14320 30633 30647 56326 56326 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 71.46 1 74.987 74.487 75.487 3.5266 0 0 0 0.38417 1 16596 16596 0.094841 0 1 48892 14320 30633 30647 56327 56327 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.141 1 77.692 77.192 78.192 3.5505 0 0 0 0.38417 1 17371 17371 0.094841 0 1 48893 14320 30633 30647 56328 56328 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.174 1 79.757 79.257 80.257 3.5831 0 0 0 0.38417 1 17933 17933 0.094841 0 1 48894 14320 30633 30647 56329 56329 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 76.749 1 80.332 79.832 80.832 3.5831 0 0 0 0.38417 1 18089 18089 0.50596 0.50596 1 48895 14320 30633 30647 56330 56330 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2969970703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.992 1 81.614 81.114 82.114 3.6216 0 0 0 0.38417 1 18450 18450 0.094841 0 1 48896 14320 30633 30647 56331 56331 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.136 1 81.757 81.257 82.257 3.6216 0 0 0 0.38417 1 18490 18490 0.094841 0 1 48897 14320 30633 30647 56332 56332 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2973327636719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.704 1 82.326 81.826 82.826 3.6216 0 0 0 0.38417 1 18638 18638 0.094841 0 1 48898 14320 30633 30647 56333 56333 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.129 1 82.771 82.271 83.271 3.6423 0 0 0 0.38417 1 18753 18753 0.094841 0 1 48899 14320 30633 30647 56334 56334 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 85.093 1 88.842 88.342 89.342 3.7494 0 0 0 0.38417 1 20180 20180 0.094841 0 1 48900 14320 30633 30647 56335 56335 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 87.318 1 91.108 90.608 91.608 3.7905 0 0 0 0.38417 1 20716 20716 0.094841 0.094841 1 48901 14320 30633 30647 56336 56336 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978820800781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 88.474 1 92.285 91.785 92.785 3.8104 0 0 0 0.38417 1 20999 20999 0.094841 0.094841 1 48902 14320 30633 30647 56337 56337 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2978515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 92.975 1 96.853 96.353 97.353 3.8782 0 0 0 0.38417 1 22032 22032 0.094841 0 1 48903 14320 30633 30647 56338 56338 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 112.86 1 116.51 116.01 117.01 3.6568 0 0 0 0.38417 1 26822 26822 0.094841 0 1 48904 14320 30633 30647 56339 56339 0.22417277055819795 VKTIKARKKLH 11 Unmodified _VKTIKARKKLH_ 0 0 0 L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense;L1PA4_dup3512|chr5:78118216-78124355:+|1.0341877785724607|0.0470028697882318|4.46|151.0|67|2|sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|86|2|sense;L1PA4_dup6973|chrX:44983415-44989548:-|4.558301217143069|0.1912180951727358|4.58|151.0|161|3|sense;L1P2_dup1131|chr10:74401401-74403861:-|2.489534540722718|0.0409097966648914|5.93|151.0|28|1|sense;L1PA4_dup5125|chr7:2743553-2749674:+|4.660270585575112|0.3843512821369055|3.6|151.0|21|1|sense;L1PA4_dup3918|chr5:81277265-81282797:+|2.2887189045196226|0.4178766756111602|2.45|151.0|116|3|sense;L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|17|1|sense;L1PA4_dup10606|chr15:49833220-49839367:-|17.899098546826757|0.1349251379244348|7.05|151.0|105|2|sense;L1PA4_dup6358|chr9:5681126-5684273:-|1.2038867112044556|0.0729059837795364|4.05|151.0|21|1|sense;L1PA3_dup8940|chr13:51690197-51696329:-|5.6803292248546615|0.3905262416181377|3.86|151.0|92|2|sense;L1PA3_dup7862|chr11:14661316-14667447:+|10.915711217062816|0.2245931855064829|5.6|151.0|145|3|sense;L1PA4_dup3920|chr5:81591850-81598022:+|3.5484925116687305|0.0892499324395287|5.31|151.0|91|2|sense;L1PA4_dup1795|chr3:8921953-8928067:+|1.195994774416141|0.0707331299891909|4.08|151.0|78|2|sense;L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|82|2|sense;L1PA4_dup2832|chr4:54043448-54047811:+|5.567831203330776|0.3168839020890082|4.14|151.0|3|1|sense;L1PA4_dup9475|chr12:42111146-42117288:+|1.022006623338764|0.0378273288268346|4.76|150.0|81|2|sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|88|3|sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|140|3|sense;L1PA4_dup10838|chr16:47324145-47328488:+|1.658714551052665|0.1279437443331215|3.7|151.0|56|2|sense;L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|128|3|sense;L1PA4_dup11087|chr18:2860238-2866343:-|4.606141803686642|0.0460219950410076|6.65|151.0|134|3|sense;L1P2_dup692|chr7:27981997-27986629:+|1.2369705116800491|0.0715062666962075|4.11|150.0|106|3|sense;L1PA4_dup11435|chr19:57729120-57733434:+|2.089003635873075|0.1899130611257554|3.46|151.0|2|1|sense;L1PA3_dup1651|chr3:23349244-23355385:+|5.259329219615194|0.1376035700049634|5.26|151.0|138|3|sense;L1PA4_dup1847|chr3:23296318-23301810:-|1.8342958169262715|0.0662083048174421|4.79|150.0|18|1|sense;L1PA4_dup149|chr1:58491107-58495430:+|2.338473663313528|0.1022341695354385|4.52|151.0|2|1|sense;L1PA4_dup2560|chr3:188372710-188378861:-|1.258140243472459|0.0658429929939032|4.26|151.0|129|3|sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|86|2|sense;L1PA3_dup10434|chr20:25713657-25719813:-|2.352683765188044|0.3018076436137335|2.96|151.0|149|3|sense;L1PA5_dup4649|chr6:108410816-108416935:+|2.878392370759965|0.0978504728766236|4.88|151.0|84|2|sense;L1PA4_dup8478|chr10:76142709-76148837:-|1.0440206847343891|0.0295351456034395|5.14|150.0|101|2|sense;L1PA4_dup1809|chr3:16954029-16958182:-|1.7680816857231312|0.0547972556747503|5.01|151.0|28|2|sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|119|3|sense;L1PA3_dup2543|chr4:53247910-53253902:+|4.873828015707739|0.0668283659608141|6.19|151.0|126|3|sense;L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|96|2|sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|107|2|sense;L1PA4_dup7538|chrX:101438578-101441122:-|1.8401558908259747|0.2677551512033943|2.78|151.0|55|2|sense;L1PA4_dup9826|chr13:21553480-21555603:+|2.100741955799514|0.0336754761055417|5.96|151.0|18|2|sense;L1PA4_dup7134|chrX:63367439-63373187:+|1.119482072862859|0.0905559386570946|3.63|150.0|94|2|sense;L1PA4_dup9067|chr11:76963834-76969955:+|1.1075880458288034|0.1059746915233485|3.39|151.0|149|3|sense;L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|134|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|81|2|sense;L1PA4_dup11723|chr21:37109077-37115174:+|7.316536454252519|0.2044528470653013|5.16|151.0|137|3|sense;L1PA5_dup485|chr1:169400698-169406797:+|2.628905668107519|0.141825956988596|4.21|151.0|82|2|sense;L1PA4_dup9413|chr12:31550067-31556205:-|2.726835947782492|0.2421480181761509|3.49|151.0|23|1|sense;L1PA6_dup1973|chr5:66105954-66112079:+|7.118895977505494|0.3964295689625278|4.17|151.0|19|1|sense;L1PA4_dup9604|chr12:70299226-70305316:-|3.935702141743885|0.1954729699871628|4.33|151.0|21|1|sense;L1PA5_dup5334|chr7:140103316-140109396:-|1.381416391342705|0.1856468963131438|2.9|151.0|93|2|sense;L1PA5_dup9673|chr14:54948076-54954122:+|1.9174597605676795|0.1031944050004776|4.22|151.0|147|3|sense;L1PA4_dup8808|chr11:31740754-31746893:+|5.265765824320956|0.1089499044572722|5.59|151.0|18|1|sense;L1PA5_dup4021|chr5:140452035-140457861:+|2.914272625257498|0.2395960516437604|3.6|151.0|15|1|sense;L1PA5_dup7904|chr10:95851430-95856188:-|1.2307813740649065|0.307432305852987|2.0|151.0|96|3|sense;L1PA4_dup9068|chr11:77326705-77331796:+|1.6933985265923042|0.2187520327454562|2.95|151.0|78|2|sense;L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|48|2|sense;L1PA4_dup8281|chr10:21834336-21836884:+|1.8616751051864333|0.0303537928777926|5.94|151.0|39|2|sense;L1PA4_dup859|chr2:9860963-9867093:+|1.156892954855876|0.0827504543280931|3.81|151.0|19|1|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense L1PA4_dup1382|chr2:143536379-143542524:-|1.899624247773362|0.2561547661691826|2.89|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 113.75 1 117.4 116.9 117.9 3.6568 0 0 0 0.38417 1 27057 27057 0.094841 0 1 48905 14320 30633 30647 56340 56340 0.22417277055819795 VKTIKARKKRH 11 Unmodified _VKTIKARKKRH_ 0 0 0 L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|91|2|sense L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|91|2|sense L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|91|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 454.938232421875 3 455.636883 1363.88882 0.038848 1.7701E-05 -1.7189 -0.00078321 -1.6801 -0.00076551 455.63609210580313 42.936 0.2152 46.447 46.306 46.521 3.5103 18 13 2 0 0 0 22.551 1 8018 8018 0.45452 0.29519 1 55007 48906 14385 30634 30648 56341 56341 0.22143197661603153 VKTIKARKKRH 11 Unmodified _VKTIKARKKRH_ 0 0 0 L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|91|2|sense L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|91|2|sense L1PA4_dup7061|chrX:55936392-55942528:+|1.077240996875504|0.0360160018695343|4.9|151.0|91|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 455.636883 1363.88882 0.096524 4.398E-05 -1.7437 -0.00079449 -1.6472 -0.00075051 455.6361128970039 42.891 0.065014 46.649 46.6 46.665 3.7579 0.10136 -8.8567E-06 NaN 0.45452 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 56662 48907 14385 30634 30648 0.22143197661603153 VKTITEPP 8 Unmodified _VKTITEPP_ 0 0 0 REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|19|3|sense REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 442.75982666015625 2 442.758018 883.501483 -0.28919 -0.00012804 3.7482 0.0016596 3.4591 0.0015315 442.7596948265454 82.75 0.033157 86.087 86.073 86.107 3.337 6 3 2 0 0 0 0.82752 1 20743 20743 2.5775 0.27475 1 48355 + 48908 25696 30635 30649 56342 56342 0.055072666659384595 VKTITEPP 8 Unmodified _VKTITEPP_ 0 0 0 REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|19|3|sense REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|19|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 442.758018 883.501483 -0.17431 -7.7179E-05 3.7313 0.001652 3.5569 0.0015749 442.75941856440375 82.431 0.081078 85.829 85.758 85.839 3.3984 -0.1242 0.00036553 NaN 2.5775 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 42930 + 48909 25696 30635 30649 0.055072666659384595 VKTITEPP 8 Unmodified _VKTITEPP_ 0 0 0 REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|19|3|sense REV__L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|19|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 442.758018 883.501483 -0.0012124 -5.368E-07 2.9085 0.0012878 2.9073 0.0012872 442.7592208438482 82.369 0.028778 85.944 85.926 85.955 3.5753 -0.0090902 -0.00036305 NaN 2.5775 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 94888 + 48910 25696 30635 30649 0.055072666659384595 VKTKKLKKL 9 Unmodified _VKTKKLKKL_ 0 0 0 ENST00000488341.5_1_2:26174656-26179274:-|nuORF;ENST00000475453.1_1_2:26177134-26203442:-|nuORF;ENSG00000084731|ENST00000264712|KIF3C ENST00000488341.5_1_2:26174656-26179274:-|nuORF ENST00000488341.5_1_2:26174656-26179274:-|nuORF MSMS UPN48_class_I_Rep_2 6 543.7623901367188 2 543.392077 1084.7696 NaN NaN NaN NaN NaN NaN NaN 69.523 1 73.045 72.545 73.545 3.5216 0 0 0 0.40038 1 16110 16110 0.6015 0 1 48911 1257 30636 30650 56343 56343 0.23060610984225605 VKTKQKML 8 Unmodified _VKTKQKML_ 0 0 0 L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|96|3|sense L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|96|3|sense L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|96|3|sense MSMS UPN48_class_I_Rep_1 5 488.64068603515625 2 488.304613 974.594672 NaN NaN NaN NaN NaN NaN NaN 63.025 1 66.487 65.987 66.987 3.4625 0 0 0 0.40625 1 14154 14154 2.3027 0 1 48912 13921 30637 30651 56344 56344 0.10635867847543068 VKTLFFFV 8 Unmodified _VKTLFFFV_ 0 0 0 REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF MSMS UPN47_class_I_Rep_3 4 500.79803466796875 2 500.796946 999.57934 NaN NaN NaN NaN NaN NaN NaN 85.625 1 88.996 88.496 89.496 3.3716 0 0 0 0.40404 1 21450 21450 5.2307 0 1 + 48913 22023 30638 30652 56345 56345 0.07953324321988475 VKTLFFFV 8 Unmodified _VKTLFFFV_ 0 0 0 REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF MSMS UPN48_class_I_Rep_2 6 500.79705810546875 2 500.796946 999.57934 NaN NaN NaN NaN NaN NaN NaN 85.123 1 88.817 88.317 89.317 3.6937 0 0 0 0.40404 1 20240 20240 5.2307 0 1 + 48914 22023 30638 30652 56346 56346 0.07953324321988475 VKTLFFFV 8 Unmodified _VKTLFFFV_ 0 0 0 REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF MSMS UPN48_class_I_Rep_3 7 500.79718017578125 2 500.796946 999.57934 NaN NaN NaN NaN NaN NaN NaN 85.046 1 88.795 88.295 89.295 3.7494 0 0 0 0.40404 1 20170 20170 5.2307 0 1 + 48915 22023 30638 30652 56347 56347 0.07953324321988475 VKTLFFFV 8 Unmodified _VKTLFFFV_ 0 0 0 REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF REV__ENST00000377304.6_1_10:18834706-18834850:-|nuORF MSMS UPN48_class_I_Rep_3 7 500.7966003417969 2 500.796946 999.57934 NaN NaN NaN NaN NaN NaN NaN 85.166 1 88.916 88.416 89.416 3.7494 0 0 0 0.40404 1 20196 20196 5.2307 0 1 + 48916 22023 30638 30652 56348 56348 0.07953324321988475 VKTLHDRE 8 Unmodified _VKTLHDRE_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS UPN47_class_I_Rep_2 3 499.27447509765625 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 54.806 1 58.125 57.625 58.625 3.3187 0 0 0 0.40738 1 12420 12420 0.79363 0 1 + 48917 20518 30639 30653 56349 56349 0.03683688157695997 VKTLVLAY 8 Unmodified _VKTLVLAY_ 0 0 0 nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 MSMS UPN47_class_I_Rep_1 2 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 59.97 1 63.368 62.868 63.868 3.3982 0 0 0 0.40738 1 13965 13965 0.79363 0 1 48918 2256 30640 30654 56350 56350 0.10204733942305211 VKTNLTLHK 9 Unmodified _VKTNLTLHK_ 0 0 0 L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|24|2|sense L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|24|2|sense L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 527.3311157226562 2 527.324391 1052.63423 NaN NaN NaN NaN NaN NaN NaN 110.4 1 114.04 113.54 114.54 3.6326 0 0 0 0.39518 1 26803 26803 1.8442 0.19162 1 48919 11319 30641 30655 56351 56351 0.11001711122594315 VKTPCHNRP 9 Unmodified _VKTPCHNRP_ 0 0 0 REV__L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|150|3|anti-sense REV__L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_3 7 526.3167114257812 2 526.276918 1050.53928 NaN NaN NaN NaN NaN NaN NaN 70.221 1 73.734 73.234 74.234 3.5128 0 0 0 0.39518 1 16235 16235 1.8442 0.19162 1 + 48920 27890 30642 30656 56352 56352 0.01603454379755931 VKTPHEKSK 9 Unmodified _VKTPHEKSK_ 0 0 0 ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron MSMS UPN48_class_I_Rep_2 6 527.3062133789062 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 97.165 1 100.94 100.44 101.44 3.779 0 0 0 0.38784 1 23091 23091 3.5965 1.019 1 48921 1910 30643 30657 56353 56353 0.07364834225904815 VKTPHEKSK 9 Unmodified _VKTPHEKSK_ 0 0 0 ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 527.3074951171875 2 527.306198 1052.59784 0.46245 0.00024385 -0.35666 -0.00018807 0.10579 5.5782E-05 527.3059540583225 99.215 0.23621 103.1 103 103.23 3.8839 46 33 2 0 0 0 0.47197 1 23507 23507 3.5965 0.31518 1 109120 48922 1910 30643 30657 56354 56354 0.07364834225904815 VKTPHEKSK 9 Unmodified _VKTPHEKSK_ 0 0 0 ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron MSMS UPN48_class_I_Rep_3 7 527.306396484375 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 97.088 1 101 100.5 101.5 3.9084 0 0 0 0.38784 1 23015 23015 3.5965 1.019 1 48923 1910 30643 30657 56355 56355 0.07364834225904815 VKTPHEKSK 9 Unmodified _VKTPHEKSK_ 0 0 0 ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron ENSG00000109790.16,KLHL5,chr4,+,I11.1,39113233,39115158|38|5.45|1|intron MSMS UPN48_class_I_Rep_3 7 527.3062744140625 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 97.528 1 101.43 100.93 101.93 3.9022 0 0 0 0.38784 1 23116 23116 3.5965 0 1 48924 1910 30643 30657 56356 56356 0.07364834225904815 VKTPIFLF 8 Unmodified _VKTPIFLF_ 0 0 0 MLT1C_dup8995|chr8:43003583-43004029:-|1.001407595561557|0.0622330594803605|4.01|151.0|29|3|anti-sense MLT1C_dup8995|chr8:43003583-43004029:-|1.001407595561557|0.0622330594803605|4.01|151.0|29|3|anti-sense MLT1C_dup8995|chr8:43003583-43004029:-|1.001407595561557|0.0622330594803605|4.01|151.0|29|3|anti-sense MSMS UPN46_class_I_Rep_3 1 482.7955627441406 2 482.796946 963.57934 NaN NaN NaN NaN NaN NaN NaN 21.024 1 21.024 20.524 21.524 0 0 0 0 0.40581 1 2282 2282 2.8892 0 1 48925 16319 30644 30658 56357 56357 0.09609324321979784 VKTSRKKHR 9 Unmodified _VKTSRKKHR_ 0 0 0 L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|26|1|sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|26|1|sense L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|26|1|sense MSMS UPN48_class_I_Rep_1 5 570.3588256835938 2 570.359631 1138.70471 NaN NaN NaN NaN NaN NaN NaN 20.34 1 23.885 23.385 24.385 3.5454 0 0 0 0.4007 1 1696 1696 0.52476 0 1 48926 11913 30645 30659 56358 56358 0.14090429230918744 VKTTKSFML 9 Unmodified _VKTTKSFML_ 0 0 0 REV__L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|33|2|sense REV__L1M1_dup7327|chr11:123495697-123497621:-|1.0268671835105752|0.0221372365326932|5.54|147.0|33|2|sense MSMS UPN47_class_I_Rep_3 4 527.8034057617188 2 527.801903 1053.58925 NaN NaN NaN NaN NaN NaN NaN 80.993 1 84.316 83.816 84.816 3.3231 0 0 0 0.39428 1 20261 20261 2.0598 0 1 + 48927 24130 30646 30660 56359 56359 0.06460144265065537 VKTTQLST 8 Unmodified _VKTTQLST_ 0 0 0 L1MB4_dup2953|chr6:36080237-36082404:-|11.187455828972142|0.3208331758077001|5.12|151.0|52|2|sense;L1MB7_dup2284|chr2:64587958-64588749:-|1.4624873202895037|0.3820107296942622|1.94|150.0|3|1|sense L1MB4_dup2953|chr6:36080237-36082404:-|11.187455828972142|0.3208331758077001|5.12|151.0|52|2|sense L1MB4_dup2953|chr6:36080237-36082404:-|11.187455828972142|0.3208331758077001|5.12|151.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 439.252685546875 2 439.2531 876.491647 NaN NaN NaN NaN NaN NaN NaN 82.274 1 85.673 85.173 86.173 3.3984 0 0 0 0.40738 1 20509 20509 0.79363 0 1 48928 10496 30647 30661 56360 56360 0.04846078660557396 VKTVQKVY 8 Unmodified _VKTVQKVY_ 0 0 0 L1ME4b_dup225|chr1:31924913-31925241:+|1.5968223063474247|0.1224725783723101|3.7|151.0|13|1|anti-sense L1ME4b_dup225|chr1:31924913-31925241:+|1.5968223063474247|0.1224725783723101|3.7|151.0|13|1|anti-sense L1ME4b_dup225|chr1:31924913-31925241:+|1.5968223063474247|0.1224725783723101|3.7|151.0|13|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7768249511719 2 482.794935 963.575317 0.070991 3.4274E-05 1.1995 0.00057913 1.2705 0.0006134 482.79531134763334 32.588 0.090248 32.588 32.569 32.659 0 6 4 2 0 0 0 0.72333 1 5615 5615 2.8892 0 1 121870 48929 12917 30648 30662 56361 56361 0.09207234828272703 VKTYQESPLL 10 Unmodified _VKTYQESPLL_ 0 0 0 THE1B-int_dup704|chr3:31605728-31607318:+|1.5286959932725146|0.1362610722415218|3.49|151.0|95|3|anti-sense THE1B-int_dup704|chr3:31605728-31607318:+|1.5286959932725146|0.1362610722415218|3.49|151.0|95|3|anti-sense THE1B-int_dup704|chr3:31605728-31607318:+|1.5286959932725146|0.1362610722415218|3.49|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_2 6 589.3255004882812 2 589.326796 1176.63904 NaN NaN NaN NaN NaN NaN NaN 61.913 1 65.386 64.886 65.886 3.4738 0 0 0 0.53105 1 13792 13792 2.7352 0 1 48930 32932 30649 30663 56362 56362 0.0577855047470166 VKVDDMVLPV 10 Unmodified _VKVDDMVLPV_ 0 0 0 REV__nc|ENSG00000172534|P51610-3|HCFC1 REV__nc|ENSG00000172534|P51610-3|HCFC1 MSMS UPN48_class_I_Rep_2 6 557.8148803710938 2 557.812467 1113.61038 NaN NaN NaN NaN NaN NaN NaN 100.18 1 103.94 103.44 104.44 3.7575 0 0 0 0.53105 1 23797 23797 3.5965 0.31518 1 + 48931 20451 30650 30664 56363 56363 0.05812109573912494 VKVDSEINKD 10 Unmodified _VKVDSEINKD_ 0 0 0 ENST00000565343.1_1_16:53689488-53692740:-|nuORF;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L ENST00000565343.1_1_16:53689488-53692740:-|nuORF ENST00000565343.1_1_16:53689488-53692740:-|nuORF MSMS UPN48_class_I_Rep_3 7 573.8050537109375 2 573.803685 1145.59282 NaN NaN NaN NaN NaN NaN NaN 79.354 1 82.996 82.496 83.496 3.6423 0 0 0 0.53105 1 18812 18812 1.3295 0 1 48932 1661 30651 30665 56364 56364 0.025844855726063543 VKVGKRPV 8 Unmodified _VKVGKRPV_ 0 0 0 REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF MSMS UPN46_class_I_Rep_3 1 441.9314270019531 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 45.444 1 45.444 44.944 45.944 0 0 0 0 0.40625 1 9240 9240 2.3027 1.6124 1 + 48933 22460 30652 30666 56365 56365 0.13554378130606892 VKVGRRKLLIK 11 Unmodified _VKVGRRKLLIK_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|122|3|sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|122|3|sense MSMS UPN48_class_I_Rep_2 6 437.31097412109375 3 437.309996 1308.90816 NaN NaN NaN NaN NaN NaN NaN 103.31 1 107.02 106.52 107.52 3.7108 0 0 0 0.38417 1 24456 24456 0.094841 0 1 + 48934 23780 30653 30667 56366 56366 0.26606153952548084 VKVHRPRA 8 Unmodified _VKVHRPRA_ 0 0 0 REV__ENST00000358823.6_1_1:200708894-200709023:+|nuORF REV__ENST00000358823.6_1_1:200708894-200709023:+|nuORF MSMS UPN46_class_I_Rep_3 1 482.27703857421875 2 481.80396 961.593367 NaN NaN NaN NaN NaN NaN NaN 111.7 1 111.7 111.2 112.2 0 0 0 0 0.40738 1 27550 27550 0.79363 0 1 + 48935 21887 30654 30668 56367 56367 0.11103414593640082 VKVKLKDR 8 Unmodified _VKVKLKDR_ 0 0 0 L1MEd_dup21349|chr22:50374940-50375180:+|1.3658911633965376|0.0366815447677455|5.22|151.0|6|2|sense L1MEd_dup21349|chr22:50374940-50375180:+|1.3658911633965376|0.0366815447677455|5.22|151.0|6|2|sense L1MEd_dup21349|chr22:50374940-50375180:+|1.3658911633965376|0.0366815447677455|5.22|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.3287353515625 2 493.329476 984.6444 -0.32586 -0.00016076 0.15299 7.5474E-05 -0.17287 -8.5282E-05 493.3294878421377 20.945 0.74136 24.589 24.252 24.994 3.6436 140 80 2 0 0 0 0.82752 1 2118 2118 0.6015 0 1 143820 48936 13201 30655 30669 56368 56368 0.15146318847837392 VKVKLKRKKR 10 Unmodified _VKVKLKRKKR_ 0 0 0 nc|ENSG00000117602|Q9UKA8-4|RCAN3;nc|ENSG00000117602|Q9UKA8-3|RCAN3 nc|ENSG00000117602|Q9UKA8-4|RCAN3 nc|ENSG00000117602|Q9UKA8-4|RCAN3 MSMS UPN48_class_I_Rep_2 6 641.9606323242188 2 641.961523 1281.90849 NaN NaN NaN NaN NaN NaN NaN 42.979 1 46.741 46.241 47.241 3.7617 0 0 0 0.53105 1 8022 8022 0 0 1 48937 16669 30656 30670 56369 56369 0.2788157367240274 VKVKNGTTYE 10 Unmodified _VKVKNGTTYE_ 0 0 0 nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ATXN2L|p.C462Vfs*19|1|0.24|ENSG00000168488|chr16:28832265-28832265|C/-|frameshift_variant;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000561539.1_1_16:28836974-28837213:+|nuORF;ENST00000566080.1_1_16:28837054-28837213:+|nuORF nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000561539.1_1_16:28836974-28837213:+|nuORF nc|ENSG00000168488|Q8WWM7-6|ATXN2L MULTI-MSMS UPN48_class_I_Rep_1 5 569.8079223632812 2 569.808771 1137.60299 0.47894 0.0002729 -0.17679 -0.00010074 0.30215 0.00017217 569.8086118699217 28.161 0.56669 31.718 31.46 32.026 3.5571 73 57 2 0 0 0 0.56309 1 3669 3669 1.6526 0 1 85903 48938 4375;7461 30657 30671 56370 56370 0.039690932978373894 VKVKSRRII 9 Unmodified _VKVKSRRII_ 0 0 0 REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|16|2|sense REV__L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|16|2|sense MSMS UPN47_class_I_Rep_3 4 549.830078125 2 549.877125 1097.7397 NaN NaN NaN NaN NaN NaN NaN 57.44 1 60.609 60.109 61.109 3.1681 0 0 0 0.40038 1 13274 13274 0.6015 0 1 + 48939 24181 30658 30672 56371 56371 0.19473672038884615 VKVKWGHL 8 Unmodified _VKVKWGHL_ 0 0 0 ENST00000311852.10_1_14:23315586-23315646:+|nuORF ENST00000311852.10_1_14:23315586-23315646:+|nuORF ENST00000311852.10_1_14:23315586-23315646:+|nuORF MSMS UPN47_class_I_Rep_2 3 483.64666748046875 2 483.797812 965.581071 NaN NaN NaN NaN NaN NaN NaN 76.925 1 80.257 79.757 80.757 3.3315 0 0 0 0.40738 1 19058 19058 0.79363 0 1 48940 6109 30659 30673 56372 56372 0.09690378130596855 VKVLLLIIKPP 11 Unmodified _VKVLLLIIKPP_ 0 0 0 MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|96|2|anti-sense MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|96|2|anti-sense MER41-int_dup1245|chr12:46253757-46255325:-|1.1557768409564384|0.0407775423595691|4.82|150.0|96|2|anti-sense MSMS UPN48_class_I_Rep_3 7 616.9384765625 2 616.93886 1231.86317 NaN NaN NaN NaN NaN NaN NaN 62.512 1 66.023 65.523 66.523 3.5104 0 0 0 0.38417 1 13900 13900 0 0 1 48941 15955 30660 30674 56373 56373 0.2565091036663034 VKVLLTYA 8 Unmodified _VKVLLTYA_ 0 0 0 REV__L1PA13_dup511|chr1:246769928-246770586:-|1.7351999699931464|0.1954718453855088|3.15|149.0|1|1|sense REV__L1PA13_dup511|chr1:246769928-246770586:-|1.7351999699931464|0.1954718453855088|3.15|149.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 453.7843322753906 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 76.695 1 80.11 79.61 80.61 3.4149 0 0 0 0.40746 1 18991 18991 0.69038 0 1 + 48942 29104 30661 30675 56374 56374 0.10204733942305211 VKVLPPLL 8 Unmodified _VKVLPPLL_ 0 0 0 REV__nc|ENSG00000010704|Q30201-6|HFE REV__nc|ENSG00000010704|Q30201-6|HFE MSMS UPN47_class_I_Rep_2 3 439.8061828613281 2 439.807314 877.600075 NaN NaN NaN NaN NaN NaN NaN 92.6 1 96.065 95.565 96.565 3.4652 0 0 0 0.40738 1 22884 22884 0.79363 0 1 + 48943 31931 30662 30676 56375 56375 0.156379147016537 VKVLPPLL 8 Unmodified _VKVLPPLL_ 0 0 0 REV__nc|ENSG00000010704|Q30201-6|HFE REV__nc|ENSG00000010704|Q30201-6|HFE MSMS UPN47_class_I_Rep_3 4 439.80633544921875 2 439.807314 877.600075 NaN NaN NaN NaN NaN NaN NaN 87.25 1 90.63 90.13 91.13 3.3801 0 0 0 0.40738 1 21863 21863 0.79363 0 1 + 48944 31931 30662 30676 56376 56376 0.156379147016537 VKVLPPLL 8 Unmodified _VKVLPPLL_ 0 0 0 REV__nc|ENSG00000010704|Q30201-6|HFE REV__nc|ENSG00000010704|Q30201-6|HFE MSMS UPN47_class_I_Rep_3 4 439.8066101074219 2 439.807314 877.600075 NaN NaN NaN NaN NaN NaN NaN 89.299 1 92.692 92.192 93.192 3.3931 0 0 0 0.40738 1 22391 22391 0.79363 0 1 + 48945 31931 30662 30676 56377 56377 0.156379147016537 VKVLPPLL 8 Unmodified _VKVLPPLL_ 0 0 0 REV__nc|ENSG00000010704|Q30201-6|HFE REV__nc|ENSG00000010704|Q30201-6|HFE MSMS UPN47_class_I_Rep_3 4 439.80615234375 2 439.807314 877.600075 NaN NaN NaN NaN NaN NaN NaN 89.43 1 92.823 92.323 93.323 3.3931 0 0 0 0.40738 1 22422 22422 0.79363 0 1 + 48946 31931 30662 30676 56378 56378 0.156379147016537 VKVLPPLL 8 Unmodified _VKVLPPLL_ 0 0 0 REV__nc|ENSG00000010704|Q30201-6|HFE REV__nc|ENSG00000010704|Q30201-6|HFE MSMS UPN47_class_I_Rep_3 4 439.8061828613281 2 439.807314 877.600075 NaN NaN NaN NaN NaN NaN NaN 89.627 1 93.025 92.525 93.525 3.3976 0 0 0 0.40738 1 22471 22471 0.79363 0 1 + 48947 31931 30662 30676 56379 56379 0.156379147016537 VKVLPYFLL 9 Unmodified _VKVLPYFLL_ 0 0 0 REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|58|2|anti-sense REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_3 7 546.3488159179688 2 546.346803 1090.67905 NaN NaN NaN NaN NaN NaN NaN 35.486 1 39.158 38.658 39.658 3.6721 0 0 0 0.40038 1 5760 5760 0.6015 0 1 + 48948 24425 30663 30677 56380 56380 0.13734141935924526 VKVLRRSNR 9 Unmodified _VKVLRRSNR_ 0 0 0 ENST00000479165.1_1_6:79650412-79665440:-|nuORF;ENSG00000146247|ENST00000275034|PHIP ENST00000479165.1_1_6:79650412-79665440:-|nuORF ENST00000479165.1_1_6:79650412-79665440:-|nuORF MSMS UPN46_class_I_Rep_3 1 564.3604736328125 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 78.251 1 78.251 77.751 78.751 0 0 0 0 0.4007 1 18320 18320 0.52476 0 1 48949 3430 30664 30678 56381 56381 0.14642429230934795 VKVLWHPSS 9 Unmodified _VKVLWHPSS_ 0 0 0 ENST00000478653.6_1_1:21771676-21780057:+|nuORF ENST00000478653.6_1_1:21771676-21780057:+|nuORF ENST00000478653.6_1_1:21771676-21780057:+|nuORF MSMS UPN46_class_I_Rep_3 1 526.797119140625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 32.29 1 32.29 31.79 32.79 0 0 0 0 0.39428 1 5505 5505 2.0598 0.21551 1 48950 6985 30665 30679 56382 56382 0.05773753059793307 VKVPAKSIL 9 Unmodified _VKVPAKSIL_ 0 0 0 ENSG00000173065|ENST00000581407|FAM222B ENSG00000173065|ENST00000581407|FAM222B ENSG00000173065|ENST00000581407|FAM222B MSMS UPN46_class_I_Rep_3 1 477.82232666015625 2 477.820953 953.627353 NaN NaN NaN NaN NaN NaN NaN 101.39 1 101.39 100.89 101.89 0 0 0 0 0.38639 1 24737 24737 3.9444 0 1 48951 4608 30666 30680 56383 56383 0.14868398242049352 VKVRVKRRS 9 Unmodified _VKVRVKRRS_ 0 0 0 REV__ENSG00000163083|ENST00000295228|INHBB REV__ENSG00000163083|ENST00000295228|INHBB MULTI-MSMS UPN47_class_I_Rep_1 2 564.379150390625 2 564.377823 1126.74109 0.5011 0.00028281 2.6387 0.0014892 3.1398 0.001772 564.3790247515904 109.77 0.053558 113.38 113.34 113.4 3.6046 9 6 2 0 0 0 0.5015 1 27091 27091 0.45834 0 1 156730 + 48952 19960 30667 30681 56384 56384 0.18279306127647033 VKVRVKRRS 9 Unmodified _VKVRVKRRS_ 0 0 0 REV__ENSG00000163083|ENST00000295228|INHBB REV__ENSG00000163083|ENST00000295228|INHBB MSMS UPN47_class_I_Rep_2 3 564.3796997070312 2 564.377823 1126.74109 NaN NaN NaN NaN NaN NaN NaN 109.6 1 113.13 112.63 113.63 3.5307 0 0 0 0.39518 1 26704 26704 1.8442 0 1 + 48953 19960 30667 30681 56385 56385 0.18279306127647033 VKVRVKRRS 9 Unmodified _VKVRVKRRS_ 0 0 0 REV__ENSG00000163083|ENST00000295228|INHBB REV__ENSG00000163083|ENST00000295228|INHBB MSMS UPN48_class_I_Rep_1 5 564.37939453125 2 564.377823 1126.74109 NaN NaN NaN NaN NaN NaN NaN 109.66 1 113.29 112.79 113.79 3.6321 0 0 0 0.40098 1 26635 26635 0.45834 0 1 + 48954 19960 30667 30681 56386 56386 0.18279306127647033 VKVRVKRRS 9 Unmodified _VKVRVKRRS_ 0 0 0 REV__ENSG00000163083|ENST00000295228|INHBB REV__ENSG00000163083|ENST00000295228|INHBB MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 564.377823 1126.74109 0.5011 0.00028281 2.6387 0.0014892 3.1398 0.001772 564.3790247515904 109.77 0.053558 113.38 113.34 113.4 3.6046 -0.061311 0.00016828 NaN 0.45834 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 156730 + 48955 19960 30667 30681 0.18279306127647033 VKVSIIIFF 9 Unmodified _VKVSIIIFF_ 0 0 0 REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|26|2|sense REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|26|2|sense MSMS UPN48_class_I_Rep_2 6 533.3408203125 2 533.338978 1064.6634 NaN NaN NaN NaN NaN NaN NaN 90.299 1 94.046 93.546 94.546 3.7471 0 0 0 0.39326 1 21524 21524 2.3027 0 1 + 48956 32504 30668 30682 56387 56387 0.133658554188969 VKVSLAPGFK 10 Unmodified _VKVSLAPGFK_ 0 0 0 REV__nc|ENSG00000070756|P11940-2|PABPC1 REV__nc|ENSG00000070756|P11940-2|PABPC1 MSMS UPN47_class_I_Rep_1 2 523.3037109375 2 523.32386 1044.63317 NaN NaN NaN NaN NaN NaN NaN 79.486 1 82.951 82.451 83.451 3.465 0 0 0 0.53105 1 19809 19809 2.7352 0.43246 1 + 48957 17802 30669 30683 56388 56388 0.1126349675369056 VKVSLAPGFK 10 Unmodified _VKVSLAPGFK_ 0 0 0 REV__nc|ENSG00000070756|P11940-2|PABPC1 REV__nc|ENSG00000070756|P11940-2|PABPC1 MSMS UPN48_class_I_Rep_1 5 523.3038940429688 2 523.32386 1044.63317 NaN NaN NaN NaN NaN NaN NaN 78.825 1 82.36 81.86 82.86 3.5352 0 0 0 0.53105 1 18796 18796 5.2969 1.3525 1 + 48958 17802 30669 30683 56389 56389 0.1126349675369056 VKVTEIEF 8 Unmodified _VKVTEIEF_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|15|1|sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|15|1|sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.7712097167969 2 482.771126 963.527698 0.25996 0.0001255 -0.15603 -7.5329E-05 0.10392 5.017E-05 482.7709754602953 59.864 1.0428 63.137 62.665 63.707 3.2731 151 65 4 0 0 0 0.82752 1 13853 13853 11.64 0 1 810500 48959 13834 30670 30684 56390 56390 0.04447535837425676 VKVVDRHL 8 Unmodified _VKVVDRHL_ 0 0 0 L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|218|1|anti-sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|218|1|anti-sense L1PA12_dup1023|chrX:57264827-57270516:+|1.1449179285958544|0.015749776611729|6.18|150.0|218|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7956848144531 2 483.298176 964.581799 0.0067695 3.2717E-06 -1.5488 -0.00074852 -1.542 -0.00074525 483.29757296228354 29.647 0.050209 29.647 29.613 29.663 0 5 4 2 0 0 0 0.72333 1 4727 4727 2.3027 0 1 37702 48960 13706 30671 30685 56391 56391 0.09809172779637265 VKVVGPSII 9 Unmodified _VKVVGPSII_ 0 0 0 REV__ENST00000431076.5_1_2:155098684-155265690:+|nuORF REV__ENST00000431076.5_1_2:155098684-155265690:+|nuORF MSMS UPN48_class_I_Rep_3 7 456.301025390625 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 44.155 1 47.793 47.293 48.293 3.6385 0 0 0 0.38478 1 8305 8305 4.3292 2.0265 1 + 48961 19479 30672 30686 56392 56392 0.1262842283365444 VKVVPGGKFP 10 Unmodified _VKVVPGGKFP_ 0 0 0 nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B nc|ENSG00000123191|P35670-2|ATP7B nc|ENSG00000123191|P35670-2|ATP7B MSMS UPN47_class_I_Rep_3 4 514.31640625 2 514.318577 1026.6226 NaN NaN NaN NaN NaN NaN NaN 28.937 1 32.26 31.76 32.76 3.3235 0 0 0 0.53105 1 4607 4607 1.4819 0.79152 1 48962 2412 30673 30687 56393 56393 0.11035514099285137 VKVVPGGKFP 10 Unmodified _VKVVPGGKFP_ 0 0 0 nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B nc|ENSG00000123191|P35670-2|ATP7B nc|ENSG00000123191|P35670-2|ATP7B MSMS UPN47_class_I_Rep_3 4 514.3165283203125 2 514.318577 1026.6226 NaN NaN NaN NaN NaN NaN NaN 29.13 1 32.454 31.954 32.954 3.3235 0 0 0 0.53105 1 4666 4666 1.4819 0.79152 1 48963 2412 30673 30687 56394 56394 0.11035514099285137 VKVVYAHP 8 Unmodified _VKVVYAHP_ 0 0 0 REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 456.76788330078125 2 456.76872 911.522887 0.16951 7.7428E-05 -1.3308 -0.00060788 -1.1613 -0.00053045 456.7679655436538 100.35 0.18235 104.09 103.96 104.14 3.7416 35 25 2 0 0 0 0.82752 1 23828 23828 0.79363 0 1 109500 + 48964 27061 30674 30688 56395 56395 0.06358696485312976 VKVVYAHP 8 Unmodified _VKVVYAHP_ 0 0 0 REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 456.76872 911.522887 0.19499 8.9065E-05 -1.3838 -0.00063208 -1.1888 -0.00054302 456.7679561124848 100.66 0.10547 104.45 104.36 104.46 3.7942 0.20124 -0.00015939 NaN 0.79363 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 63585 + 48965 27061 30674 30688 0.06358696485312976 VKVVYAHP 8 Unmodified _VKVVYAHP_ 0 0 0 REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 456.76872 911.522887 0.10408 4.7538E-05 -1.441 -0.00065821 -1.3369 -0.00061067 456.7679385603361 100.77 0.12262 104.27 104.2 104.33 3.5063 0.023364 -0.00021165 NaN 0.79363 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 58473 + 48966 27061 30674 30688 0.06358696485312976 VKVVYAHP 8 Unmodified _VKVVYAHP_ 0 0 0 REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 456.76872 911.522887 0.029501 1.3475E-05 -1.0621 -0.00048515 -1.0326 -0.00047168 456.7681679568932 100.57 0.31023 104.18 104.04 104.35 3.6084 -0.068851 0.00013447 NaN 0.79363 53 42 2 NaN NaN NaN NaN 0 NaN NaN 0 99579 + 48967 27061 30674 30688 0.06358696485312976 VKVVYAHP 8 Unmodified _VKVVYAHP_ 0 0 0 REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense REV__L1MC5_dup1256|chr2:71335562-71335994:-|1.1357250017597942|0.0760987167258642|3.9|151.0|34|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 456.76872 911.522887 0.16951 7.7428E-05 -1.3308 -0.00060788 -1.1613 -0.00053045 456.7679655436538 100.35 0.18235 104.09 103.96 104.14 3.7416 -0.15575 -0.00011099 NaN 0.79363 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 109500 + 48968 27061 30674 30688 0.06358696485312976 VKVWPRRPTG 10 Unmodified _VKVWPRRPTG_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MSMS UPN48_class_I_Rep_1 5 598.3584594726562 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 95.875 1 99.488 98.988 99.988 3.6124 0 0 0 0.53105 1 23095 23095 1.4819 0.95714 1 + 48969 637 30675 30689 56396 56396 0.10899910999410167 VKWKLLPQ 8 Unmodified _VKWKLLPQ_ 0 0 0 nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 nc|ENSG00000141338|O94911-1|ABCA8 MSMS UPN48_class_I_Rep_1 5 506.3212890625 2 506.32112 1010.62769 NaN NaN NaN NaN NaN NaN NaN 75.281 1 78.781 78.281 79.281 3.4996 0 0 0 0.40746 1 17826 17826 0.69038 0 1 48970 3214 30676 30690 56397 56397 0.12279817961905337 VKWKNKLH 8 Unmodified _VKWKNKLH_ 0 0 0 L1ME3A_dup15605|chr22:40549261-40549769:+|1.09589327147235|0.0522528780138936|4.39|151.0|1|1|sense L1ME3A_dup15605|chr22:40549261-40549769:+|1.09589327147235|0.0522528780138936|4.39|151.0|1|1|sense L1ME3A_dup15605|chr22:40549261-40549769:+|1.09589327147235|0.0522528780138936|4.39|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.821533203125 2 526.821818 1051.62908 0.44531 0.0002346 -0.30678 -0.00016162 0.13853 7.298E-05 526.821556157442 110.47 0.20586 114.06 113.94 114.14 3.5835 38 26 2 0 0 0 0.82752 1 27222 27222 2.5775 0 1 432130 48971 12658 30677 30691 56398 56398 0.10533452050663072 VKWVHQVT 8 Unmodified _VKWVHQVT_ 0 0 0 REV__nc|ENSG00000204936|Q8N6Q3-3|CD177 REV__nc|ENSG00000204936|Q8N6Q3-3|CD177 MULTI-MSMS UPN47_class_I_Rep_2 3 499.27679443359375 2 498.784902 995.55525 0.17123 8.5407E-05 1.8248 0.00091018 1.996 0.00099559 498.78573108904 67.525 0.3147 70.788 70.597 70.912 3.2636 35 25 2 0 0 0 0.82752 1 16287 16287 2.5775 0 1 53165 + 48972 21211 30678 30692 56399 56399 0.05729483888330833 VKYAGNKK 8 Unmodified _VKYAGNKK_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MSMS UPN48_class_I_Rep_2 6 454.433349609375 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 30.124 1 33.759 33.259 34.259 3.6351 0 0 0 0.40746 1 4365 4365 0.69038 0 1 + 48973 21067 30679 30693 56400 56400 0.07169794996991641 VKYFRIII 8 Unmodified _VKYFRIII_ 0 0 0 REV__L1PA13_dup2256|chr4:129013276-129015938:-|4.242122956141757|0.0706407244445689|5.91|151.0|22|1|sense REV__L1PA13_dup2256|chr4:129013276-129015938:-|4.242122956141757|0.0706407244445689|5.91|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 526.8385009765625 2 526.33677 1050.65899 0.31607 0.00016636 0.70565 0.00037141 1.0217 0.00053777 526.8382314899496 94.872 0.16289 98.344 98.285 98.448 3.472 34 22 3 0 0 0 0.82752 1 23370 23370 0.79363 0 1 194160 + 48974 29089 30680 30694 56401 56401 0.13568390996010748 VKYKKGPG 8 Unmodified _VKYKKGPG_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MSMS UPN47_class_I_Rep_1 2 438.7694396972656 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 110.9 1 114.49 113.99 114.99 3.5835 0 0 0 0.40738 1 27345 27345 0.79363 0 1 + 48975 19444 30681 30695 56402 56402 0.0801469648533839 VKYLFGIRRN 10 Unmodified _VKYLFGIRRN_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|158|3|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|158|3|sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|158|3|sense MSMS UPN46_class_I_Rep_3 1 633.8140869140625 2 633.377489 1264.74043 NaN NaN NaN NaN NaN NaN NaN 84.471 1 84.471 83.971 84.971 0 0 0 0 0.53105 1 20097 20097 0.40072 0 1 48976 11899 30682 30696 56403 56403 0.11864466687961794 VKYRRYYRIIT 11 Unmodified _VKYRRYYRIIT_ 0 0 0 REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF MSMS UPN46_class_I_Rep_3 1 510.6340637207031 3 510.968299 1529.88307 NaN NaN NaN NaN NaN NaN NaN 98.506 1 98.506 98.006 99.006 0 0 0 0 0.38417 1 23981 23981 0.094841 0 1 + 48977 20596 30683 30697 56404 56404 0.13932054359293033 VKYRRYYRIIT 11 Unmodified _VKYRRYYRIIT_ 0 0 0 REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF MSMS UPN46_class_I_Rep_3 1 510.9687194824219 3 510.968299 1529.88307 NaN NaN NaN NaN NaN NaN NaN 99.764 1 99.764 99.264 100.26 0 0 0 0 0.38417 1 24312 24312 0.094841 0 1 + 48978 20596 30683 30697 56405 56405 0.13932054359293033 VKYRRYYRIIT 11 Unmodified _VKYRRYYRIIT_ 0 0 0 REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 510.9691467285156 3 510.968299 1529.88307 0.32052 0.00016378 0.63322 0.00032355 0.95374 0.00048733 510.96855421948834 95.464 0.14425 99.244 99.163 99.307 3.7804 31 19 2 0 0 0 0.68081 1 22700 22700 0.45452 0 1 134020 + 48979 20596 30683 30697 56406 56406 0.13932054359293033 VKYRRYYRIIT 11 Unmodified _VKYRRYYRIIT_ 0 0 0 REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 510.9687194824219 3 510.968299 1529.88307 0.32051 0.00016377 0.4645 0.00023734 0.78501 0.00040111 510.96856826001533 96.694 0.24044 100.47 100.32 100.56 3.7804 51 30 2 0 0 0 0.68478 1 22957 22957 0.094841 0.011491 1 166160 + 48980 20596 30683 30697 56407 56407 0.13932054359293033 VKYRRYYRIIT 11 Unmodified _VKYRRYYRIIT_ 0 0 0 REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 510.9681091308594 3 510.968299 1529.88307 0.29036 0.00014836 0.99571 0.00050877 1.2861 0.00065714 510.9686061540584 97.893 0.17297 101.79 101.74 101.91 3.9022 30 21 2 0 0 0 0.68081 1 23205 23205 0.45452 0.35968 1 202600 + 48981 20596 30683 30697 56408 56408 0.13932054359293033 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.79559326171875 2 482.794935 963.575317 -0.10539 -5.0881E-05 1.2992 0.00062723 1.1938 0.00057635 482.7954580895219 24.63 0.13369 24.63 24.568 24.702 0 21 13 2 0 0 0 0.82752 2 3262 3262;3271 0.79363 0 1 76029 48982 9650 30684 30698 56409;56410 56409 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7590026855469 2 482.794935 963.575317 -0.10199 -4.9242E-05 1.2788 0.00061741 1.1768 0.00056817 482.7954978792759 24.812 0.14981 24.812 24.712 24.862 0 25 14 2 0 0 0 0.82752 1 3290 3290 0.79363 0 1 143770 48983 9650 30684 30698 56411 56411 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7954406738281 2 482.794935 963.575317 -0.039947 -1.9286E-05 1.3413 0.00064756 1.3013 0.00062827 482.79555098154844 27.578 0.15231 27.578 27.552 27.704 0 12 9 3 0 0 0 0.82752 1 4120 4120 0.79363 0 1 474700 48984 9650 30684 30698 56412 56412 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7956237792969 2 482.794935 963.575317 0.053615 2.5885E-05 1.5339 0.00074056 1.5875 0.00076645 482.79561418532285 31.802 0.10639 31.802 31.783 31.889 0 9 8 2 0 0 0 0.82752 1 5370 5370 0.79363 0 1 86092 48985 9650 30684 30698 56413 56413 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.7966613769531 2 482.794935 963.575317 0.27437 0.00013247 1.6655 0.00080409 1.9399 0.00093656 482.795812373807 110.77 0.083443 110.77 110.73 110.81 0 12 7 2 0 0 0 0.82752 1 27290 27290 0.79363 0 1 53158 48986 9650 30684 30698 56414 56414 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MSMS UPN46_class_I_Rep_3 1 482.7957763671875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 24.46 1 24.46 23.96 24.96 0 0 0 0 0.40738 1 3219 3219 0.79363 0 1 48987 9650 30684 30698 56415 56415 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MSMS UPN46_class_I_Rep_3 1 482.795654296875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 34.955 1 34.955 34.455 35.455 0 0 0 0 0.40738 1 6305 6305 0.79363 0 1 48988 9650 30684 30698 56416 56416 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MSMS UPN46_class_I_Rep_3 1 482.7955627441406 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 110.45 1 110.45 109.95 110.95 0 0 0 0 0.40738 1 27202 27202 0.79363 0 1 48989 9650 30684 30698 56417 56417 0.09207234828284072 VKYSQIVK 8 Unmodified _VKYSQIVK_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|165|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 482.794935 963.575317 0.39501 0.00019071 1.3451 0.0006494 1.7401 0.00084011 482.79581404100816 107.53 0.031075 111.06 111.04 111.07 3.5345 0.14484 -0.00018383 NaN 0.79363 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 303510 48990 9650 30684 30698 0.09207234828284072 VKYYHSKK 8 Unmodified _VKYYHSKK_ 0 0 0 REV__L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|5|1|sense REV__L1MA5_dup40|chr1:50925005-50925944:+|1.1341829555523697|0.0080477806568057|7.14|150.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 526.8218383789062 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 29.85 1 29.85 29.35 30.35 0 0 0 0 0.40738 1 4782 4782 0.79363 0 1 + 48991 25397 30685 30699 56418 56418 0.05773753059793307 VKYYIRAVL 9 Unmodified _VKYYIRAVL_ 0 0 0 REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL MSMS UPN48_class_I_Rep_3 7 562.84375 2 562.844959 1123.67537 NaN NaN NaN NaN NaN NaN NaN 110.82 1 114.49 113.99 114.99 3.6654 0 0 0 0.4007 1 26292 26292 0.52476 0 1 + 48992 19702 30686 30700 56419 56419 0.11847472162071426 VLADLKVQL 9 Unmodified _VLADLKVQL_ 0 0 0 ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF ENSG00000101132|ENST00000371419|PFDN4 ENSG00000101132|ENST00000371419|PFDN4 MULTI-MSMS UPN47_class_I_Rep_1 2 499.81573486328125 2 499.815867 997.617182 0.20059 0.00010026 0.14872 7.4334E-05 0.34931 0.00017459 499.8157963430421 60.985 0.77579 64.366 63.986 64.762 3.3815 91 65 2 0 0 0 0.081756 5 14254 14217;14254;14294;14303;14332 38.176 8.8774 1 270570 48993 1548 30687 30701 56420;56421;56422;56423;56424 56421 0.11827790516804271 VLADLKVQL 9 Unmodified _VLADLKVQL_ 0 0 0 ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF ENSG00000101132|ENST00000371419|PFDN4 ENSG00000101132|ENST00000371419|PFDN4 MULTI-MSMS UPN47_class_I_Rep_2 3 499.815673828125 2 499.815867 997.617182 0.24678 0.00012335 -0.12968 -6.4815E-05 0.1171 5.853E-05 499.815713961865 61.353 0.54804 64.619 64.269 64.817 3.2654 51 38 2 0 0 0 0.11355 3 14417 14328;14372;14417 31.268 7.2478 1 179710 48994 1548 30687 30701 56425;56426;56427 56427 0.11827790516804271 VLADLKVQL 9 Unmodified _VLADLKVQL_ 0 0 0 ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF ENSG00000101132|ENST00000371419|PFDN4 ENSG00000101132|ENST00000371419|PFDN4 MULTI-MSMS UPN47_class_I_Rep_2 3 499.81597900390625 2 499.815867 997.617182 0.23756 0.00011874 -0.10994 -5.4949E-05 0.12763 6.379E-05 499.81584464872793 61.628 0.13435 64.887 64.832 64.966 3.2594 12 7 2 0 0 0 0.28552 1 14506 14506 14.838 0 1 45755 48995 1548 30687 30701 56428 56428 0.11827790516804271 VLADLKVQL 9 Unmodified _VLADLKVQL_ 0 0 0 ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF ENSG00000101132|ENST00000371419|PFDN4 ENSG00000101132|ENST00000371419|PFDN4 MULTI-MSMS UPN47_class_I_Rep_3 4 499.816162109375 2 499.815867 997.617182 0.17368 8.6808E-05 0.13158 6.5764E-05 0.30526 0.00015257 499.81587446112036 61.311 0.6859 64.476 64.23 64.916 3.1651 102 54 3 0 0 0 0.14216 4 14390 14390;14434;14485;14533 26.268 7.0112 1 247820 48996 1548 30687 30701 56429;56430;56431;56432 56429 0.11827790516804271 VLADQEVRL 9 Unmodified _VLADQEVRL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14 nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-SECPEP UPN47_class_I_Rep_1 2 522.1363525390625 2 521.798206 1041.58186 0.021931 1.1443E-05 -0.25337 -0.00013221 -0.23144 -0.00012077 521.7978627579798 45.302 0.66853 49.002 48.717 49.386 3.6999 75 37 3 0 0 0 0.087835 1 9533 9533 24.991 3.454 1 172670 48997 4410 30688 30702 56433 56433 0.06273127989015848 VLADQEVRL 9 Unmodified _VLADQEVRL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14 nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-SECPEP UPN47_class_I_Rep_2 3 522.1358642578125 2 521.798206 1041.58186 -0.16763 -8.747E-05 -0.14175 -7.3966E-05 -0.30938 -0.00016144 521.7980755050237 45.696 0.66325 49.05 48.732 49.395 3.3534 74 42 2 0 0 0 0.043932 1 9628 9628 41.956 10.687 1 118950 48998 4410 30688 30702 56434 56434 0.06273127989015848 VLADQEVRL 9 Unmodified _VLADQEVRL_ 0 0 0 nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14 nc|ENSG00000169220|O43566-6|RGS14 nc|ENSG00000169220|O43566-6|RGS14 MULTI-SECPEP UPN47_class_I_Rep_3 4 522.1350708007812 2 521.798206 1041.58186 0.1418 7.3988E-05 -0.37638 -0.00019639 -0.23458 -0.00012241 521.797851026618 45.784 0.68977 49.028 48.691 49.38 3.2441 69 39 3 0 0 0 0.074778 1 9737 9737 29.841 9.426 1 145820 48999 4410 30688 30702 56435 56435 0.06273127989015848 VLADQVWTL 9 Unmodified _VLADQVWTL_ 0 0 0 nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1 nc|ENSG00000114026|O15527-6|OGG1 nc|ENSG00000114026|O15527-6|OGG1 MULTI-MSMS UPN47_class_I_Rep_1 2 522.7896728515625 2 522.78985 1043.56515 0.3221 0.00016839 -0.40551 -0.00021199 -0.083403 -4.3602E-05 522.7895681482773 77.245 0.707 80.66 80.364 81.071 3.4149 125 62 3 0 0 0 0.13244 1 19173 19173 27.629 4.8925 1 256120 49000 2064 30689 30703 56436 56436 0.04510627103036313 VLADQVWTL 9 Unmodified _VLADQVWTL_ 0 0 0 nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1 nc|ENSG00000114026|O15527-6|OGG1 nc|ENSG00000114026|O15527-6|OGG1 MULTI-MSMS UPN47_class_I_Rep_2 3 522.7896728515625 2 522.78985 1043.56515 0.06401 3.3464E-05 -0.21799 -0.00011396 -0.15398 -8.0498E-05 522.7896509935072 77.445 0.64854 80.776 80.454 81.102 3.3315 149 67 3 0 0 0 0.13244 2 19200 19163;19200 27.629 4.8925 1 214430 49001 2064 30689 30703 56437;56438 56438 0.04510627103036313 VLADQVWTL 9 Unmodified _VLADQVWTL_ 0 0 0 nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1 nc|ENSG00000114026|O15527-6|OGG1 nc|ENSG00000114026|O15527-6|OGG1 MULTI-MSMS UPN47_class_I_Rep_3 4 522.7898559570312 2 522.78985 1043.56515 0.35115 0.00018358 -0.48108 -0.0002515 -0.12993 -6.7927E-05 522.7895675630099 77.447 0.68471 80.716 80.387 81.072 3.269 130 71 2 0 0 0 0.33908 1 19265 19265 11.495 2.7493 1 191480 49002 2064 30689 30703 56439 56439 0.04510627103036313 VLAEIVKP 8 Unmodified _VLAEIVKP_ 0 0 0 nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43 nc|ENSG00000158113|Q8N309-2|LRRC43 nc|ENSG00000158113|Q8N309-2|LRRC43 MULTI-SECPEP UPN48_class_I_Rep_3 7 435.2499694824219 2 434.778754 867.542954 0.19642 8.5399E-05 2.8791 0.0012518 3.0756 0.0013372 434.77989194803234 69.689 0.18421 73.202 73.085 73.269 3.5128 18 13 2 0 0 0 0.72333 1 16074 16074 0.69038 0 1 79157 49003 3788 30690 30704 56440 56440 0.10388447425293634 VLAELLILS 9 Unmodified _VLAELLILS_ 0 0 0 ENST00000394715.1_1_14:64969481-64971219:-|nuORF ENST00000394715.1_1_14:64969481-64971219:-|nuORF ENST00000394715.1_1_14:64969481-64971219:-|nuORF MSMS UPN47_class_I_Rep_1 2 485.8117370605469 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 59.354 1 62.771 62.271 63.271 3.4171 0 0 0 0.2088 1 13776 13776 15.847 4.2069 1 49004 6548 30691 30705 56441 56441 0.1250127228530573 VLAELLILS 9 Unmodified _VLAELLILS_ 0 0 0 ENST00000394715.1_1_14:64969481-64971219:-|nuORF ENST00000394715.1_1_14:64969481-64971219:-|nuORF ENST00000394715.1_1_14:64969481-64971219:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.8116760253906 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 60.63 1 63.795 63.295 64.295 3.1651 0 0 0 0.19137 1 14251 14251 16.942 4.4107 1 49005 6548 30691 30705 56442 56442 0.1250127228530573 VLAETGGLFPC 11 Unmodified _VLAETGGLFPC_ 0 0 0 THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|33|3|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|33|3|sense THE1B-int_dup3191|chr11:77730950-77732499:+|1.1027674500542837|0.0169877606973382|6.02|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 553.7825927734375 2 553.781167 1105.54778 NaN NaN NaN NaN NaN NaN NaN 71.392 1 74.611 74.111 75.111 3.2188 0 0 0 0.38417 1 17515 17515 3.2813 0.70383 1 49006 32917 30692 30706 56443 56443 -0.0007703649425820913 VLAEVAQHY 9 Unmodified _VLAEVAQHY_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS UPN46_class_I_Rep_3 1 515.2726440429688 2 515.271824 1028.5291 0.30211 0.00015567 1.4549 0.00074968 1.757 0.00090535 515.2727990594441 43.502 0.23866 43.502 43.304 43.543 0 31 21 2 0 0 0 0.23293 1 8668 8668 18.146 3.5647 1 192890 49007 3184 30693 30707 56444 56444 0.01597169926208153 VLAFQQFN 8 Unmodified _VLAFQQFN_ 0 0 0 REV__Tigger4_dup578|chr6:32559439-32559713:+|1.2244798103645618|0.2368732346648211|2.37|138.0|20|3|anti-sense REV__Tigger4_dup578|chr6:32559439-32559713:+|1.2244798103645618|0.2368732346648211|2.37|138.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 483.7561950683594 2 483.75581 965.497067 NaN NaN NaN NaN NaN NaN NaN 119.39 1 119.39 118.89 119.89 0 0 0 0 0.40738 1 29672 29672 0.79363 0 1 + 49008 32782 30694 30708 56445 56445 0.012938022430489582 VLAHFLPI 8 Unmodified _VLAHFLPI_ 0 0 0 MLT1C-int_dup3|chr1:35278720-35280084:-|2.9304785663107|0.0305008528382351|6.59|151.0|55|1|anti-sense MLT1C-int_dup3|chr1:35278720-35280084:-|2.9304785663107|0.0305008528382351|6.59|151.0|55|1|anti-sense MLT1C-int_dup3|chr1:35278720-35280084:-|2.9304785663107|0.0305008528382351|6.59|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_3 7 455.2815856933594 2 455.281463 908.548374 NaN NaN NaN NaN NaN NaN NaN 52.863 1 56.461 55.961 56.961 3.5979 0 0 0 0.40738 1 10959 10959 0.79363 0 1 49009 16321 30695 30709 56446 56446 0.09044171007769819 VLAKEAQL 8 Unmodified _VLAKEAQL_ 0 0 0 REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF REV__ENST00000519769.5_1_8:21777281-21827143:+|nuORF MSMS UPN47_class_I_Rep_1 2 436.26617431640625 2 436.26601 870.517468 NaN NaN NaN NaN NaN NaN NaN 75.898 1 79.301 78.801 79.801 3.4034 0 0 0 0.40331 1 18758 18758 6.2058 0 1 + 49010 18933 30696 30710 56447 56447 0.07702972902859528 VLAKENVV 8 Unmodified _VLAKENVV_ 0 0 0 Tigger1_dup6848|chr9:36348496-36349266:+|2.0241217357095302|0.3877300196123687|2.38|151.0|32|1|anti-sense Tigger1_dup6848|chr9:36348496-36349266:+|2.0241217357095302|0.3877300196123687|2.38|151.0|32|1|anti-sense Tigger1_dup6848|chr9:36348496-36349266:+|2.0241217357095302|0.3877300196123687|2.38|151.0|32|1|anti-sense MSMS UPN47_class_I_Rep_1 2 436.26666259765625 2 436.26601 870.517468 NaN NaN NaN NaN NaN NaN NaN 76.054 1 79.458 78.958 79.958 3.4034 0 0 0 0.40501 1 18804 18804 3.9444 0 1 49011 33167 30697 30711 56448 56448 0.07702972902859528 VLAKKRKKL 9 Unmodified _VLAKKRKKL_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 542.3901977539062 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 117.53 1 117.53 117.03 118.03 0 0 0 0 0.4029 1 29136 29136 0 0 1 49012 11755 30698 30712 56449 56449 0.22711146561323403 VLAKKRKKL 9 Unmodified _VLAKKRKKL_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 542.2744140625 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 118.42 1 118.42 117.92 118.92 0 0 0 0 0.4029 1 29394 29394 0 0 1 49013 11755 30698 30712 56450 56450 0.22711146561323403 VLAKKRKKL 9 Unmodified _VLAKKRKKL_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 542.390380859375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 118.42 1 118.42 117.92 118.92 0 0 0 0 0.4029 1 29396 29396 0 0 1 49014 11755 30698 30712 56451 56451 0.22711146561323403 VLAKKRKKL 9 Unmodified _VLAKKRKKL_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense MSMS UPN47_class_I_Rep_2 3 542.3899536132812 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 65.709 1 68.965 68.465 69.465 3.2556 0 0 0 0.4029 1 15740 15740 0 0 1 49015 11755 30698 30712 56452 56452 0.22711146561323403 VLAKKRKKL 9 Unmodified _VLAKKRKKL_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 542.3621215820312 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 114.8 1 118.28 117.78 118.78 3.4802 0 0 0 0.4029 1 28207 28207 0 0 1 49016 11755 30698 30712 56453 56453 0.22711146561323403 VLAKKRKKL 9 Unmodified _VLAKKRKKL_ 0 0 0 L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense L1MC5a_dup5599|chr5:146247164-146248406:-|1.5142793248421034|0.0152314782068363|6.64|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 542.3899536132812 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 112.89 1 116.56 116.06 117.06 3.6648 0 0 0 0.4029 1 26916 26916 0 0 1 49017 11755 30698 30712 56454 56454 0.22711146561323403 VLAKPRVCP 9 Unmodified _VLAKPRVCP_ 0 0 0 REV__L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|84|1|anti-sense REV__L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|84|1|anti-sense MSMS UPN48_class_I_Rep_3 7 491.79595947265625 2 491.796955 981.579357 NaN NaN NaN NaN NaN NaN NaN 70.948 1 74.466 73.966 74.966 3.5185 0 0 0 0.38639 1 16442 16442 3.9444 1.6417 1 + 49018 24191 30699 30713 56455 56455 0.08783001050346684 VLALGRKRP 9 Unmodified _VLALGRKRP_ 0 0 0 REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF MSMS UPN46_class_I_Rep_3 1 505.55584716796875 2 505.335093 1008.65563 NaN NaN NaN NaN NaN NaN NaN 102.89 1 102.89 102.39 103.39 0 0 0 0 0.4007 1 25104 25104 0.52476 0 1 + 49019 19353 30700 30714 56456 56456 0.15165140941985555 VLALTASTY 9 Unmodified _VLALTASTY_ 0 0 0 nc|ENSG00000157985|Q9UPQ3-3|AGAP1 nc|ENSG00000157985|Q9UPQ3-3|AGAP1 nc|ENSG00000157985|Q9UPQ3-3|AGAP1 MULTI-MSMS UPN46_class_I_Rep_3 1 469.76336669921875 2 469.7633 937.512048 0.067189 3.1563E-05 -0.35286 -0.00016576 -0.28567 -0.0001342 469.7631463730635 34.057 0.70694 34.057 33.727 34.434 0 67 49 2 0 0 0 0.10817 4 6072 5970;6014;6072;6129 32.305 3.2239 1 130910 49020 16720 30701 30715 56457;56458;56459;56460 56459 0.04079249320375311 VLANIRSYS 9 Unmodified _VLANIRSYS_ 0 0 0 L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|50|3|anti-sense;L1MA2_dup5190|chr10:38020230-38020920:-|1.9994633614204325|0.0634911022905057|4.98|151.0|36|2|anti-sense L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|50|3|anti-sense L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_2 3 511.7438659667969 2 511.785099 1021.55564 NaN NaN NaN NaN NaN NaN NaN 32.84 1 36.295 35.795 36.795 3.4547 0 0 0 0.38478 1 5742 5742 4.3292 0 1 49021 9392 30702 30716 56461 56461 0.04572858817527958 VLAPELLLDP 10 Unmodified _VLAPELLLDP_ 0 0 0 ENSG00000100263|ENST00000216085|RHBDD3 ENSG00000100263|ENST00000216085|RHBDD3 ENSG00000100263|ENST00000216085|RHBDD3 MSMS UPN46_class_I_Rep_3 1 540.322021484375 2 540.320983 1078.62741 NaN NaN NaN NaN NaN NaN NaN 37.959 1 37.959 37.459 38.459 0 0 0 0 0.53105 1 7186 7186 1.6526 0 1 49022 1488 30703 30717 56462 56462 0.09124353451397837 VLAPGVVLI 9 Unmodified _VLAPGVVLI_ 0 0 0 nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS UPN48_class_I_Rep_2 6 440.79937744140625 2 440.796946 879.57934 0.054254 2.3915E-05 2.3329 0.0010283 2.3871 0.0010522 440.7994405863735 49.107 0.39861 52.824 52.634 53.032 3.7175 44 26 2 0 0 0 0.48414 1 9939 9939 2.3027 0 1 119540 49023 4615 30704 30718 56463 56463 0.1347332432198982 VLAQFLCL 8 Unmodified _VLAQFLCL_ 0 0 0 REV__L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|79|1|anti-sense REV__L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|79|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 453.75018310546875 2 453.759507 905.50446 0.071325 3.2365E-05 2.9736 0.0013493 3.0449 0.0013817 453.76049075832105 74.737 0.081764 78.131 78.088 78.17 3.3937 14 8 2 0 0 0 0.72333 1 18399 18399 2.3027 0 1 40796 + 49024 29886 30705 30719 56464 56464 0.047928185191153716 VLAQFLCL 8 Unmodified _VLAQFLCL_ 0 0 0 REV__L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|79|1|anti-sense REV__L1PA6_dup3566|chrX:46482030-46484385:-|1.043516876911876|0.205629643753717|2.34|151.0|79|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 453.759507 905.50446 -0.11026 -5.0031E-05 3.5359 0.0016045 3.4256 0.0015544 453.76082523394103 74.874 0.18884 78.187 78.143 78.331 3.3127 0.028131 0.00015841 NaN 2.3027 25 20 2 NaN NaN NaN NaN 0 NaN NaN 0 62365 + 49025 29886 30705 30719 0.047928185191153716 VLAQTQLLL 9 Unmodified _VLAQTQLLL_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-4|VPS13C REV__nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS UPN47_class_I_Rep_1 2 499.8158264160156 2 499.815867 997.617182 0.20059 0.00010026 0.14872 7.4334E-05 0.34931 0.00017459 499.8157963430421 60.985 0.77579 64.366 63.986 64.762 3.3815 91 65 2 0 0 0 0.37599 1 14180 14180 9.3831 0 1 270570 + 49026 18913 30706 30720 56465 56465 0.11827790516827008 VLARAFRQQK 10 Unmodified _VLARAFRQQK_ 0 0 0 L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|172|3|sense L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|172|3|sense L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|172|3|sense MSMS UPN47_class_I_Rep_2 3 406.24884033203125 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 82.42 1 85.818 85.318 86.318 3.3984 0 0 0 0.53105 1 20544 20544 0.77653 0 1 49027 14910 30707 30721 56466 56466 0.12079296028105091 VLARAFRQQK 10 Unmodified _VLARAFRQQK_ 0 0 0 L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|172|3|sense L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|172|3|sense L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|172|3|sense MSMS UPN48_class_I_Rep_2 6 406.2489318847656 3 406.247285 1215.72002 NaN NaN NaN NaN NaN NaN NaN 81.567 1 85.224 84.724 85.724 3.6567 0 0 0 0.53105 1 19363 19363 0.77653 0.078866 1 49028 14910 30707 30721 56467 56467 0.12079296028105091 VLARIDLV 8 Unmodified _VLARIDLV_ 0 0 0 AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|21|3|anti-sense AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|21|3|anti-sense AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|21|3|anti-sense MSMS UPN47_class_I_Rep_3 4 449.7897033691406 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 116.5 1 119.96 119.46 120.46 3.462 0 0 0 0.40625 1 28671 28671 2.3027 0 1 49029 390 30708 30722 56468 56468 0.11187252173863271 VLARQHFV 8 Unmodified _VLARQHFV_ 0 0 0 REV__L1MC3_dup6668|chr9:33881483-33882281:-|1.4496602081746168|0.0137805980324767|6.72|151.0|40|1|anti-sense REV__L1MC3_dup6668|chr9:33881483-33882281:-|1.4496602081746168|0.0137805980324767|6.72|151.0|40|1|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2855224609375 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.002 1 57.517 57.017 58.017 3.5143 0 0 0 0.40581 1 11391 11391 2.8892 0 1 + 49030 26770 30709 30723 56469 56469 0.07004903608185487 VLASHLVQLI 10 Unmodified _VLASHLVQLI_ 0 0 0 nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 MSMS UPN48_class_I_Rep_1 5 546.8404541015625 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 96.159 1 99.772 99.272 100.27 3.6124 0 0 0 0.53105 1 23158 23158 3.5965 0 1 49031 1745 30710 30724 56470 56470 0.12811168299458586 VLASIDLVL 9 Unmodified _VLASIDLVL_ 0 0 0 REV__ENSG00000181291|ENST00000631683|TMEM132E REV__ENSG00000181291|ENST00000631683|TMEM132E MULTI-MSMS UPN48_class_I_Rep_1 5 471.7970886230469 2 471.797143 941.579734 0.13268 6.26E-05 -0.63597 -0.00030005 -0.50329 -0.00023745 471.7967166813857 69.822 1.0491 73.281 72.772 73.821 3.4598 166 80 3 0 0 0 0.26948 2 16211 16211;16290 15.847 0 1 373950 49032 20730 30711 30725 56471;56472 56471 0.10660699251184269 VLASIDLVL 9 Unmodified _VLASIDLVL_ 0 0 0 REV__ENSG00000181291|ENST00000631683|TMEM132E REV__ENSG00000181291|ENST00000631683|TMEM132E MULTI-MSMS UPN48_class_I_Rep_2 6 471.7969665527344 2 471.797143 941.579734 0.20903 9.8621E-05 -0.38429 -0.00018131 -0.17526 -8.2687E-05 471.79687130499764 69.537 0.98466 73.059 72.722 73.707 3.5216 160 82 3 0 0 0 0.20276 3 16100 16100;16140;16213 20.454 0 1 524240 49033 20730 30711 30725 56473;56474;56475 56473 0.10660699251184269 VLASIDLVL 9 Unmodified _VLASIDLVL_ 0 0 0 REV__ENSG00000181291|ENST00000631683|TMEM132E REV__ENSG00000181291|ENST00000631683|TMEM132E MULTI-MSMS UPN48_class_I_Rep_3 7 471.7969970703125 2 471.797143 941.579734 0.26632 0.00012565 -0.4354 -0.00020542 -0.16908 -7.9772E-05 471.79679398705923 69.593 1.0343 73.106 72.694 73.728 3.5129 173 82 3 0 0 0 0.20276 2 16026 16026;16102 20.454 0 1 558900 49034 20730 30711 30725 56476;56477 56476 0.10660699251184269 VLASIEVLYL 10 Unmodified _VLASIEVLYL_ 0 0 0 ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234.13,TTC39C,chr18,+,I15.1,24125663,24128885|38|6.4|3|intron ENSG00000168234|ENST00000317571|TTC39C ENSG00000168234|ENST00000317571|TTC39C MSMS UPN48_class_I_Rep_1 5 560.3388671875 2 560.336633 1118.65871 NaN NaN NaN NaN NaN NaN NaN 106.33 1 109.96 109.46 110.46 3.6277 0 0 0 0.53105 1 25624 25624 3.9444 1.6417 1 49035 4359 30712 30726 56478 56478 0.10412926485469143 VLASKPQG 8 Unmodified _VLASKPQG_ 0 0 0 L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|98|1|anti-sense L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|98|1|anti-sense L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|98|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 400.2377624511719 2 400.237253 798.459953 0.063988 2.561E-05 1.2662 0.0005068 1.3302 0.00053241 400.2376873736576 107.88 0.30702 107.88 107.81 108.12 0 39 23 4 0 0 0 0.82752 1 26371 26371 2.5775 0 1 35763000 49036 8604 30713 30727 56479 56479 0.05266130697293647 VLASRGPR 8 Unmodified _VLASRGPR_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS UPN46_class_I_Rep_3 1 428.2627868652344 2 428.261594 854.508634 0.12411 5.3151E-05 0.2237 9.5802E-05 0.34781 0.00014895 428.2618756352249 84.953 0.59561 84.953 84.693 85.289 0 182 57 5 0 0 0 0.82752 4 20243 20243;20256;20292;20327 5.2307 0 1 47641000 + 49037 20617 30714 30728 56480;56481;56482;56483 56480 0.07556044057048439 VLASRGPR 8 Unmodified _VLASRGPR_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS UPN46_class_I_Rep_3 1 428.2618408203125 2 428.261594 854.508634 0.12486 5.3471E-05 0.16428 7.0355E-05 0.28914 0.00012383 428.26179513221484 85.343 0.16331 85.343 85.289 85.452 0 68 14 5 0 0 0 0.82752 1 20370 20370 5.2307 0 1 20865000 + 49038 20617 30714 30728 56484 56484 0.07556044057048439 VLASRGPR 8 Unmodified _VLASRGPR_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS UPN47_class_I_Rep_1 2 428.2617492675781 2 428.261594 854.508634 0.052226 2.2366E-05 0.14281 6.1162E-05 0.19504 8.3528E-05 428.26170926181067 81.857 1.2124 85.369 84.885 86.097 3.5122 474 139 5 0 0 0 0.82752 4 20389 20389;20425;20458;20493 5.2307 0 1 10895000 + 49039 20617 30714 30728 56485;56486;56487;56488 56485 0.07556044057048439 VLASRGPR 8 Unmodified _VLASRGPR_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS UPN48_class_I_Rep_1 5 428.2615051269531 2 428.261594 854.508634 -0.066968 -2.868E-05 0.18863 8.0782E-05 0.12166 5.2102E-05 428.26170729775095 81.637 1.0363 85.212 84.722 85.758 3.5753 460 126 5 0 0 0 0.82752 5 19390 19390;19423;19455;19488;19521 5.2307 0 1 13331000 + 49040 20617 30714 30728 56489;56490;56491;56492;56493 56489 0.07556044057048439 VLASRGPR 8 Unmodified _VLASRGPR_ 0 0 0 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS UPN48_class_I_Rep_2 6 428.26165771484375 2 428.261594 854.508634 0.080545 3.4494E-05 0.085087 3.6439E-05 0.16563 7.0934E-05 428.2616950910733 81.493 1.6035 85.15 84.698 86.302 3.6567 479 202 5 0 0 0 0.82752 5 19304 19304;19336;19365;19398;19429 5.2307 0 1 17252000 + 49041 20617 30714 30728 56494;56495;56496;56497;56498 56494 0.07556044057048439 VLASVLNQ 8 Unmodified _VLASVLNQ_ 0 0 0 L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|74|3|sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|74|3|sense L1M1_dup4534|chr9:7026234-7029125:-|2.119328871532048|0.150631873883285|3.81|151.0|74|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.2511291503906 2 422.25036 842.486168 0.1041 4.3958E-05 1.5587 0.00065817 1.6628 0.00070213 422.25089335269587 107.92 0.29621 107.92 107.86 108.15 0 48 20 4 0 0 0 0.82752 1 26398 26398 2.5775 0 1 111160000 49042 8576 30715 30729 56499 56499 0.05862399868772172 VLAVSILILL 10 Unmodified _VLAVSILILL_ 0 0 0 REV__L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|48|1|anti-sense REV__L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_3 4 527.8386840820312 2 527.367736 1052.72092 NaN NaN NaN NaN NaN NaN NaN 93.769 1 97.174 96.674 97.674 3.4052 0 0 0 0.53105 1 23363 23363 0 0 1 + 49043 28092 30716 30730 56500 56500 0.19666697624484186 VLAWRGRV 8 Unmodified _VLAWRGRV_ 0 0 0 REV__ENST00000557115.5_1_14:77564866-77564980:+|nuORF REV__ENST00000557115.5_1_14:77564866-77564980:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 478.7921447753906 2 478.793061 955.571569 -0.28937 -0.00013855 -1.5429 -0.00073875 -1.8323 -0.00087729 478.7922068782548 39.263 0.3157 42.929 42.778 43.094 3.6652 23 20 2 0 0 0 0.82752 1 7674 7674 2.5775 0 1 39288 + 49044 22998 30717 30731 56501 56501 0.09200609845095187 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.20672607421875 2 484.20625 966.397946 0.25491 0.00012343 -0.37333 -0.00018077 -0.11843 -5.7343E-05 484.20613543377516 18.306 0.53483 21.837 21.598 22.132 3.5313 104 68 2 0 0 0 0.82752 2 1227 1227;1256 17.087 5.9721 1 57313 49045 8635 30718 30732 56502;56503 56502 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.20648193359375 2 484.20625 966.397946 0.25298 0.0001225 -0.15645 -7.5754E-05 0.096535 4.6743E-05 484.20617478457797 18.675 0.40801 22.206 22.132 22.54 3.5313 81 53 2 0 0 0 0.82752 1 1370 1370 2.8892 0 1 56137 49046 8635 30718 30732 56504 56504 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.2060546875 2 484.20625 966.397946 0.33381 0.00016163 -0.13521 -6.5471E-05 0.1986 9.6162E-05 484.20617480608894 18.272 0.33506 21.923 21.75 22.085 3.6509 59 42 2 0 0 0 0.82752 2 1164 1164;1193 11.114 0 1 38276 49047 8635 30718 30732 56505;56506 56505 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 484.2063903808594 2 484.20625 966.397946 0.33244 0.00016097 -0.42721 -0.00020686 -0.094761 -4.5884E-05 484.20616604943194 18.465 0.093819 22.116 22.085 22.179 3.6509 14 10 2 0 0 0 0.82752 1 1251 1251 2.8892 0 1 30558 49048 8635 30718 30732 56507 56507 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.2052307128906 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 17.777 1 21.429 20.929 21.929 3.6518 0 0 0 0.4032 1 1090 1090 6.3541 0 1 49049 8635 30718 30732 56508 56508 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.20648193359375 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 17.878 1 21.53 21.03 22.03 3.6518 0 0 0 0.4032 1 1110 1110 6.3541 0 1 49050 8635 30718 30732 56509 56509 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.2059326171875 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 18.001 1 21.653 21.153 22.153 3.6518 0 0 0 0.40581 1 1135 1135 2.8892 0 1 49051 8635 30718 30732 56510 56510 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.20574951171875 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 18.94 1 22.591 22.091 23.091 3.6509 0 0 0 0.40581 1 1355 1355 2.8892 0 1 49052 8635 30718 30732 56511 56511 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.20611572265625 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 18.428 1 22.015 21.515 22.515 3.5874 0 0 0 0.40581 1 1216 1216 2.8892 0 1 49053 8635 30718 30732 56512 56512 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2064514160156 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 18.695 1 22.282 21.782 22.782 3.5874 0 0 0 0.4032 1 1277 1277 6.3541 0 1 49054 8635 30718 30732 56513 56513 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2056884765625 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 18.838 1 22.425 21.925 22.925 3.5874 0 0 0 0.40738 1 1315 1315 0.79363 0 1 49055 8635 30718 30732 56514 56514 -0.08659680037726503 VLCCFGYY 8 Unmodified _VLCCFGYY_ 0 0 0 L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense;L1PB2_dup1069|chr6:88957061-88959363:+|1.1962134286110293|0.0188255397142603|5.99|151.0|93|1|anti-sense;L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|98|2|anti-sense;L1M1_dup8409|chr15:28603995-28605321:+|2.087554515344537|0.0354553013933082|5.88|151.0|66|2|anti-sense;L1M1_dup8365|chr15:22508794-22510120:+|1.0092692634850822|0.0199833717837468|5.66|147.0|65|2|anti-sense;L1MA4A_dup1351|chr3:184973417-184975910:-|1.4606772099546186|0.0128580390789675|6.83|150.0|166|3|anti-sense;L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|149|2|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|166|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.20599365234375 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 19.01 1 22.598 22.098 23.098 3.5874 0 0 0 0.40581 1 1359 1359 2.8892 0 1 49056 8635 30718 30732 56515 56515 -0.08659680037726503 VLCKLFAGVY 10 Unmodified _VLCKLFAGVY_ 0 0 0 REV__HAL1_dup18394|chr14:58367686-58368626:+|1.7249461560240875|0.4139324712738497|2.06|151.0|43|2|anti-sense REV__HAL1_dup18394|chr14:58367686-58368626:+|1.7249461560240875|0.4139324712738497|2.06|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_3 7 556.8129272460938 2 556.81227 1111.60999 NaN NaN NaN NaN NaN NaN NaN 66.715 1 70.222 69.722 70.722 3.5077 0 0 0 0.53105 1 15174 15174 3.9444 0 1 + 49057 23383 30719 30733 56516 56516 0.05864734644728742 VLCLCMLFF 9 Unmodified _VLCLCMLFF_ 0 0 0 REV__L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|143|2|anti-sense REV__L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|143|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.7700805664062 2 544.770702 1087.52685 0.59177 0.00032238 -0.96946 -0.00052813 -0.3777 -0.00020576 544.770190886701 93.072 0.28236 96.541 96.32 96.602 3.4687 53 39 2 0 0 0 0.2896 1 22980 22980 14.582 0 1 105620 + 49058 24072 30720 30734 56517 56517 -0.013410413991323367 VLCLCMLFF 9 Unmodified _VLCLCMLFF_ 0 0 0 REV__L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|143|2|anti-sense REV__L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|143|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.7705078125 2 544.770702 1087.52685 0.4764 0.00025953 -1.1302 -0.0006157 -0.6538 -0.00035617 544.770119609091 88.328 0.25922 91.715 91.61 91.869 3.3873 46 30 2 0 0 0 0.2896 1 22184 22184 14.582 0 1 212690 + 49059 24072 30720 30734 56518 56518 -0.013410413991323367 VLCLLKNPSDF 11 Unmodified _VLCLLKNPSDF_ 0 0 0 REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|141|1|anti-sense REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|141|1|anti-sense MSMS UPN48_class_I_Rep_2 6 624.8348388671875 2 624.836474 1247.65839 NaN NaN NaN NaN NaN NaN NaN 107.06 1 110.74 110.24 111.24 3.6783 0 0 0 0.38417 1 25294 25294 2.7352 0.23671 1 + 49060 23828 30721 30735 56519 56519 0.04447183493948614 VLCLPLFLC 9 Unmodified _VLCLPLFLC_ 0 0 0 L1M4_dup16770|chr15:56126488-56127550:+|1.955996766606945|0.0141421055103026|7.11|151.0|64|2|anti-sense L1M4_dup16770|chr15:56126488-56127550:+|1.955996766606945|0.0141421055103026|7.11|151.0|64|2|anti-sense L1M4_dup16770|chr15:56126488-56127550:+|1.955996766606945|0.0141421055103026|7.11|151.0|64|2|anti-sense MSMS UPN47_class_I_Rep_1 2 510.78485107421875 2 510.784667 1019.55478 NaN NaN NaN NaN NaN NaN NaN 42.398 1 46.078 45.578 46.578 3.6792 0 0 0 0.22893 1 8615 8615 14.582 0 1 49061 8856 30722 30736 56520 56520 0.0457860485259971 VLCMNYHQP 9 Unmodified _VLCMNYHQP_ 0 0 0 nc|ENSG00000173157|P59510-2|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20 nc|ENSG00000173157|P59510-2|ADAMTS20 nc|ENSG00000173157|P59510-2|ADAMTS20 MSMS UPN47_class_I_Rep_3 4 552.7496337890625 2 552.751887 1103.48922 NaN NaN NaN NaN NaN NaN NaN 28.221 1 31.554 31.054 32.054 3.3337 0 0 0 0.39518 1 4395 4395 1.8442 0.51471 1 49062 4613 30723 30737 56521 56521 -0.05838416340407093 VLCQRAVGCM 10 Unmodified _VLCQRAVGCM_ 0 0 0 L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|82|2|anti-sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|82|2|anti-sense L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|82|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.7647094726562 2 540.261565 1078.50858 0.20829 0.00011253 0.54538 0.00029465 0.75367 0.00040718 540.2616126966519 45.068 0.8389 48.312 48.01 48.849 3.2441 124 57 3 0 0 0 0.56033 1 9631 9631 3.5965 0 1 267570 49063 15268 30724 30738 56522 56522 -0.0275378332114542 VLCTRRGGLY 10 Unmodified _VLCTRRGGLY_ 0 0 0 REV__ENST00000473549.1_1_22:36633328-36635709:-|nuORF REV__ENST00000473549.1_1_22:36633328-36635709:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.3124389648438 2 569.3135 1136.61245 0.40598 0.00023113 -0.40429 -0.00023017 0.0016988 9.6718E-07 569.3132160832015 63.988 0.63567 67.244 66.881 67.517 3.2556 72 54 2 0 0 0 0.54822 1 15172 15172 5.7319 0.50118 1 158960 + 49064 22515 30725 30739 56523 56523 0.04960583102410965 VLCVGMHVLL 10 Unmodified _VLCVGMHVLL_ 0 0 0 REV__L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|47|1|anti-sense REV__L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 542.3074340820312 2 542.306298 1082.59804 0.55447 0.00030069 -0.86382 -0.00046845 -0.30935 -0.00016776 542.3057845887395 61.817 0.7359 65.285 64.841 65.577 3.4678 127 67 2 0 0 0 0.41734 1 13744 13744 18.135 3.5533 1 257260 + 49065 26695 30726 30740 56524 56524 0.060047946298709576 VLCVGMHVLL 10 Unmodified _VLCVGMHVLL_ 0 0 0 REV__L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|47|1|anti-sense REV__L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|47|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 542.306298 1082.59804 0.53873 0.00029216 -0.84302 -0.00045717 -0.30429 -0.00016502 542.3058109742448 61.602 0.83978 65.076 64.712 65.552 3.4738 -0.037577 5.0378E-05 NaN 18.135 125 68 2 NaN NaN NaN NaN 0 NaN NaN 0 239240 + 49066 26695 30726 30740 0.060047946298709576 VLCVGMHVLL 10 Unmodified _VLCVGMHVLL_ 0 0 0 REV__L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|47|1|anti-sense REV__L1MC2_dup779|chr2:127357516-127358650:+|1.893539996693068|0.0206384709293796|6.52|151.0|47|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 542.306298 1082.59804 0.52284 0.00028354 -0.94934 -0.00051483 -0.4265 -0.00023129 542.3057112398493 61.467 0.71351 64.979 64.629 65.342 3.5128 -0.13382 -6.4941E-05 NaN 18.135 113 60 2 NaN NaN NaN NaN 0 NaN NaN 0 240700 + 49067 26695 30726 30740 0.060047946298709576 VLDDKLVFV 9 Unmodified _VLDDKLVFV_ 0 0 0 nc|ENSG00000177119|Q4KMQ2-4|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 MULTI-MSMS UPN47_class_I_Rep_1 2 524.3077392578125 2 524.307875 1046.6012 0.28736 0.00015066 -0.33166 -0.00017389 -0.044303 -2.3228E-05 524.3075707528828 65.354 0.96673 68.71 68.326 69.293 3.3557 132 59 3 0 0 0 0.029742 3 15537 15537;15579;15633 57.249 21.122 1 466260 49068 16762 30727 30741 56525;56526;56527 56525 0.07976084279880524 VLDDKLVFV 9 Unmodified _VLDDKLVFV_ 0 0 0 nc|ENSG00000177119|Q4KMQ2-4|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 MULTI-MSMS UPN47_class_I_Rep_2 3 524.307861328125 2 524.307875 1046.6012 -0.0095673 -5.0162E-06 0.095851 5.0256E-05 0.086284 4.5239E-05 524.3078061417647 65.567 0.8652 68.822 68.467 69.333 3.2556 110 56 3 0 0 0 0.095207 3 15661 15661;15743;15783 34.932 4.2955 1 605660 49069 16762 30727 30741 56528;56529;56530 56528 0.07976084279880524 VLDDKLVFV 9 Unmodified _VLDDKLVFV_ 0 0 0 nc|ENSG00000177119|Q4KMQ2-4|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 nc|ENSG00000177119|Q4KMQ2-4|ANO6 MULTI-MSMS UPN47_class_I_Rep_3 4 524.3076782226562 2 524.307875 1046.6012 0.33352 0.00017487 -0.36418 -0.00019094 -0.030665 -1.6078E-05 524.3075918552754 65.637 1.0239 68.816 68.447 69.471 3.1795 139 67 3 0 0 0 0.053261 3 15779 15739;15779;15821 47.594 4.4739 1 541020 49070 16762 30727 30741 56531;56532;56533 56532 0.07976084279880524 VLDEAFQRY 9 Unmodified _VLDEAFQRY_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000563908.1_1_15:72647792-72668286:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MSMS UPN47_class_I_Rep_2 3 570.7881469726562 2 570.787838 1139.56112 NaN NaN NaN NaN NaN NaN NaN 47.806 1 51.155 50.655 51.655 3.3492 0 0 0 0.049049 1 10280 10280 37.075 27.692 1 49071 5596 30728 30742 56534 56534 -0.003074623906513807 VLDELVRP 8 Unmodified _VLDELVRP_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G nc|ENSG00000164749|Q14541|HNF4G nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS UPN47_class_I_Rep_2 3 470.7764892578125 2 470.776742 939.538931 -0.070613 -3.3243E-05 -0.030937 -1.4564E-05 -0.10155 -4.7808E-05 470.7766014853813 47.115 0.71766 50.466 50.132 50.849 3.3515 89 47 3 0 0 0 0.82752 1 10131 10131 15.847 0 1 203430 49072 4128 30729 30743 56535 56535 0.0667435793156983 VLDELVRP 8 Unmodified _VLDELVRP_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G nc|ENSG00000164749|Q14541|HNF4G nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS UPN47_class_I_Rep_3 4 470.7766418457031 2 470.776742 939.538931 -0.12276 -5.7791E-05 0.10244 4.8228E-05 -0.020313 -9.5631E-06 470.7767452321997 47.245 0.66004 50.489 50.151 50.811 3.2439 79 41 3 0 0 0 0.82752 1 10221 10221 15.847 0 1 189910 49073 4128 30729 30743 56536 56536 0.0667435793156983 VLDFGDLTY 9 Unmodified _VLDFGDLTY_ 0 0 0 ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|6|intron;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|3|intron;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|4|intron;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|7|intron;ENSG00000101639|ENST00000506447|CEP192 ENST00000513432.5_1_18:13059017-13124766:+|nuORF ENST00000513432.5_1_18:13059017-13124766:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 521.8001708984375 2 521.758215 1041.50188 0.32712 0.00017068 0.053117 2.7714E-05 0.38024 0.00019839 521.7582247095695 79.128 0.38118 82.574 82.433 82.814 3.4456 41 30 2 0 0 0 0.16559 1 19711 19711 24.021 10.513 1 393680 49074 1583 30730 30744 56537 56537 -0.01721358404847706 VLDFGDLTY 9 Unmodified _VLDFGDLTY_ 0 0 0 ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|6|intron;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|3|intron;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|4|intron;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639.18,CEP192,chr18,+,I44.1,13114252,13116373|27|8.74|7|intron;ENSG00000101639|ENST00000506447|CEP192 ENST00000513432.5_1_18:13059017-13124766:+|nuORF ENST00000513432.5_1_18:13059017-13124766:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 521.758544921875 2 521.758215 1041.50188 0.34836 0.00018176 0.47366 0.00024714 0.82202 0.0004289 521.7585478375205 79.276 0.75575 82.571 82.176 82.932 3.295 106 67 2 0 0 0 0.11683 1 19776 19776 30.637 4.2953 1 196290 49075 1583 30730 30744 56538 56538 -0.01721358404847706 VLDFITHLY 9 Unmodified _VLDFITHLY_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MSMS UPN47_class_I_Rep_1 2 560.8055419921875 2 560.8055 1119.59645 NaN NaN NaN NaN NaN NaN NaN 77.18 1 80.595 80.095 81.095 3.4149 0 0 0 0.38478 1 19135 19135 4.3292 2.0265 1 49076 1045 30731 30745 56539 56539 0.04143200137150416 VLDFSPSLFL 10 Unmodified _VLDFSPSLFL_ 0 0 0 ENST00000606961.1_1_6:33665432-33665861:-|nuORF ENST00000606961.1_1_6:33665432-33665861:-|nuORF ENST00000606961.1_1_6:33665432-33665861:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 569.3129272460938 2 569.313158 1136.61176 0.3628 0.00020655 0.31534 0.00017953 0.67814 0.00038607 569.3133510343761 63.538 0.55493 66.897 66.774 67.329 3.3595 77 47 2 0 0 0 0.54466 1 15149 15149 6.2058 0 1 325040 49077 7689 30732 30746 56540 56540 0.04892066934326067 VLDFSPSLFL 10 Unmodified _VLDFSPSLFL_ 0 0 0 ENST00000606961.1_1_6:33665432-33665861:-|nuORF ENST00000606961.1_1_6:33665432-33665861:-|nuORF ENST00000606961.1_1_6:33665432-33665861:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 569.3131713867188 2 569.313158 1136.61176 0.40599 0.00023113 0.19773 0.00011257 0.60372 0.00034371 569.3132160832015 63.988 0.63567 67.244 66.881 67.517 3.2556 72 54 2 0 0 0 0.51565 1 15260 15260 10.074 0 1 158960 49078 7689 30732 30746 56541 56541 0.04892066934326067 VLDILLEQY 9 Unmodified _VLDILLEQY_ 0 0 0 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MSMS UPN47_class_I_Rep_1 2 553.3104858398438 2 553.310615 1104.60668 0.45916 0.00025406 0.073842 4.0857E-05 0.533 0.00029492 553.3105487860943 82.734 0.36849 86.273 85.979 86.347 3.5386 83 41 3 0 0 0 0.11355 3 20673 20639;20673;20681 31.268 13.122 1 204930 49079 2995 30733 30747 56542;56543;56544 56543 0.05855763071713227 VLDILLEQY 9 Unmodified _VLDILLEQY_ 0 0 0 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MSMS UPN47_class_I_Rep_2 3 553.3108520507812 2 553.310615 1104.60668 0.52188 0.00028876 -0.28728 -0.00015896 0.2346 0.0001298 553.3105069798114 82.805 0.3399 86.204 85.989 86.329 3.3984 57 42 2 0 0 0 0.20317 2 20634 20633;20634 20.415 7.3721 1 87762 49080 2995 30733 30747 56545;56546 56546 0.05855763071713227 VLDILLEQY 9 Unmodified _VLDILLEQY_ 0 0 0 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MSMS UPN47_class_I_Rep_3 4 553.3106079101562 2 553.310615 1104.60668 0.47359 0.00026204 0.0022161 1.2262E-06 0.47581 0.00026327 553.3105490662715 82.852 0.69463 86.189 85.933 86.628 3.337 175 82 3 0 0 0 0.066364 4 20818 20717;20750;20785;20818 41.956 14.327 1 236200 49081 2995 30733 30747 56547;56548;56549;56550 56550 0.05855763071713227 VLDILLEQY 9 Unmodified _VLDILLEQY_ 0 0 0 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 553.310615 1104.60668 0.52366 0.00028975 -0.83083 -0.00045971 -0.30718 -0.00016996 553.3100381470617 82.987 0.064667 86.385 86.329 86.394 3.3984 -0.06293 -0.00088925 NaN 31.268 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 36873 49082 2995 30733 30747 0.05855763071713227 VLDILLEQY 9 Unmodified _VLDILLEQY_ 0 0 0 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron;ENSG00000136891.14,TEX10,chr9,-,I12.1,100310380,100320264|27|13.14|2|intron;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron ENSG00000136891.14,TEX10,chr9,-,I9.1,100326480,100327786|41|6.84|4|intron MULTI-MATCH UPN47_class_I_Rep_3 4 2 553.310615 1104.60668 0.47439 0.00026249 -0.21315 -0.00011794 0.26124 0.00014455 553.3105426691496 83.337 0.059227 86.687 86.641 86.7 3.35 0.23856 -0.00020572 NaN 31.268 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 38236 49083 2995 30733 30747 0.05855763071713227 VLDIQNNLY 9 Unmodified _VLDIQNNLY_ 0 0 0 ENSG00000146232|ENST00000619360|NFKBIE;nc|ENSG00000146232|O00221|NFKBIE ENSG00000146232|ENST00000619360|NFKBIE ENSG00000146232|ENST00000619360|NFKBIE MULTI-SECPEP UPN47_class_I_Rep_2 3 546.800537109375 2 546.290214 1090.56587 0.37215 0.0002033 -0.31178 -0.00017032 0.06037 3.298E-05 546.2900914826403 64.321 0.50642 67.576 67.276 67.782 3.2556 61 38 2 0 0 0 0.11309 1 15352 15352 13.906 0 1 104760 49084 3428 30734 30748 56551 56551 0.02421421752092101 VLDIQNNLY 9 Unmodified _VLDIQNNLY_ 0 0 0 ENSG00000146232|ENST00000619360|NFKBIE;nc|ENSG00000146232|O00221|NFKBIE ENSG00000146232|ENST00000619360|NFKBIE ENSG00000146232|ENST00000619360|NFKBIE MULTI-MATCH UPN47_class_I_Rep_3 4 2 546.290214 1090.56587 0.41981 0.00022934 -0.28307 -0.00015464 0.13673 7.4696E-05 546.2901526213283 64.214 0.44403 67.388 67.214 67.658 3.1741 -0.094014 1.9039E-05 NaN 13.906 52 29 2 NaN NaN NaN NaN 0 NaN NaN 0 129000 49085 3428 30734 30748 0.02421421752092101 VLDIVRERPA 10 Unmodified _VLDIVRERPA_ 0 0 0 REV__nc|ENSG00000169933|Q14CM0|FRMPD4 REV__nc|ENSG00000169933|Q14CM0|FRMPD4 MSMS UPN46_class_I_Rep_3 1 584.3483276367188 2 584.345855 1166.67716 NaN NaN NaN NaN NaN NaN NaN 37.41 1 37.41 36.91 37.91 0 0 0 0 0.53105 1 7032 7032 1.1933 0.59184 1 + 49086 20336 30735 30749 56552 56552 0.10048481180024282 VLDIVVLLS 9 Unmodified _VLDIVVLLS_ 0 0 0 REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|182|3|anti-sense REV__HERVIP10FH-int_dup95|chr5:143089122-143092154:-|1.5891931563151027|0.0707351243238536|4.49|151.0|182|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8111267089844 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 60.707 1 63.973 63.473 64.473 3.2654 0 0 0 0.35339 1 14222 14222 7.9102 0 1 + 49087 23776 30736 30750 56553 56553 0.12501272285282994 VLDKLLLYLR 10 Unmodified _VLDKLLLYLR_ 0 0 0 nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS UPN48_class_I_Rep_3 7 623.3980102539062 2 623.400099 1244.78564 NaN NaN NaN NaN NaN NaN NaN 75.538 1 79.104 78.604 79.604 3.5659 0 0 0 0.53105 1 17750 17750 1.4819 0 1 49088 1290 30737 30751 56554 56554 0.17304272430442325 VLDLRRKA 8 Unmodified _VLDLRRKA_ 0 0 0 L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|28|1|anti-sense L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|28|1|anti-sense L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|28|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.81158447265625 2 485.811451 969.608348 0.16752 8.1385E-05 0.13567 6.591E-05 0.30319 0.0001473 485.8115392026923 60.11 0.34575 63.509 63.444 63.79 3.3982 37 30 2 0 0 0 0.82752 1 14085 14085 5.7604 1.0044 1 1040700 49089 10140 30738 30752 56555 56555 0.12232861670986495 VLDLRRKA 8 Unmodified _VLDLRRKA_ 0 0 0 L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|28|1|anti-sense L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|28|1|anti-sense L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8111877441406 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 60.835 1 64.217 63.717 64.717 3.3815 0 0 0 0.40604 1 14223 14223 2.5775 0.27475 1 49090 10140 30738 30752 56556 56556 0.12232861670986495 VLDPLVYYL 9 Unmodified _VLDPLVYYL_ 0 0 0 L1ME1_dup21210|chr11:68794132-68794404:+|1.4802615864447872|0.0534662227791997|4.79|150.0|14|2|anti-sense L1ME1_dup21210|chr11:68794132-68794404:+|1.4802615864447872|0.0534662227791997|4.79|150.0|14|2|anti-sense L1ME1_dup21210|chr11:68794132-68794404:+|1.4802615864447872|0.0534662227791997|4.79|150.0|14|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.8099975585938 2 547.810251 1093.60595 NaN NaN NaN NaN NaN NaN NaN 37.08 1 40.479 39.979 40.979 3.3988 0 0 0 0.26661 1 7029 7029 12.532 0.29089 1 49091 12292 30739 30753 56557 56557 0.06288968422654762 VLDPYLLKY 9 Unmodified _VLDPYLLKY_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-MSMS UPN47_class_I_Rep_1 2 562.3236694335938 2 562.323525 1122.6325 0.37799 0.00021256 -0.0028957 -1.6283E-06 0.3751 0.00021093 562.3234636111047 63.676 1.4788 67.032 66.614 68.092 3.3557 372 136 4 0 0 0 0.0053074 8 15120 15004;15045;15081;15120;15157;15194;15235;15303 86.332 50.205 1 2795500 49092 5702 30740 30754 56558;56559;56560;56561;56562;56563;56564;56565 56561 0.07608657313994627 VLDPYLLKY 9 Unmodified _VLDPYLLKY_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-MSMS UPN47_class_I_Rep_2 3 562.3236694335938 2 562.323525 1122.6325 0.40377 0.00022705 -0.012033 -6.7667E-06 0.39174 0.00022028 562.3234400350838 63.886 1.5597 67.141 66.767 68.326 3.2556 384 129 4 0 0 0 0.0053074 7 15231 15118;15152;15190;15231;15273;15312;15351 79.596 39.639 1 2771600 49093 5702 30740 30754 56566;56567;56568;56569;56570;56571;56572 56569 0.07608657313994627 VLDPYLLKY 9 Unmodified _VLDPYLLKY_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-SECPEP UPN47_class_I_Rep_2 3 561.7861938476562 2 562.323525 1122.6325 0.37995 0.00021365 -0.85089 -0.00047847 -0.47094 -0.00026482 562.3231913293799 65.107 0.13074 68.363 68.304 68.435 3.2556 15 9 2 0 0 0 0.11309 1 15547 15547 13.906 3.0821 1 57638 49094 5702 30740 30754 56573 56573 0.07608657313994627 VLDPYLLKY 9 Unmodified _VLDPYLLKY_ 0 0 0 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 ENSG00000239789|ENST00000285298|MRPS17 MULTI-MSMS UPN47_class_I_Rep_3 4 562.3236694335938 2 562.323525 1122.6325 0.42964 0.0002416 0.051659 2.9049E-05 0.4813 0.00027065 562.3234707037892 64.044 1.5961 67.218 66.771 68.367 3.1741 346 125 4 0 0 0 0.0063213 10 15263 15182;15221;15263;15305;15347;15385;15426;15469;15525;15620 89.401 46.375 1 2399300 49095 5702 30740 30754 56574;56575;56576;56577;56578;56579;56580;56581;56582;56583 56576 0.07608657313994627 VLDQAVGAYL 10 Unmodified _VLDQAVGAYL_ 0 0 0 ENST00000368660.1_1_1:153751554-153752475:+|nuORF;ENST00000483574.6_1_1:153751589-153752475:+|nuORF;ENSG00000143554|ENST00000624995|SLC27A3 ENST00000368660.1_1_1:153751554-153752475:+|nuORF ENST00000368660.1_1_1:153751554-153752475:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 524.7872924804688 2 524.787307 1047.56006 0.31283 0.00016417 -0.26388 -0.00013848 0.048947 2.5687E-05 524.7871093238286 73.821 0.81139 77.207 76.9 77.712 3.3861 219 78 4 0 0 0 0.52083 1 18077 18077 9.3831 0.63772 1 583100 49096 3311 30741 30755 56584 56584 0.038183232404207956 VLDQAVGAYL 10 Unmodified _VLDQAVGAYL_ 0 0 0 ENST00000368660.1_1_1:153751554-153752475:+|nuORF;ENST00000483574.6_1_1:153751589-153752475:+|nuORF;ENSG00000143554|ENST00000624995|SLC27A3 ENST00000368660.1_1_1:153751554-153752475:+|nuORF ENST00000368660.1_1_1:153751554-153752475:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 524.7872314453125 2 524.787307 1047.56006 0.081681 4.2865E-05 -0.048304 -2.535E-05 0.033377 1.7516E-05 524.7872050853895 74.014 0.90594 77.318 76.939 77.845 3.3048 265 92 4 0 0 0 0.21192 2 18256 18256;18290 47.749 3.3743 1 653320 49097 3311 30741 30755 56585;56586 56585 0.038183232404207956 VLDRGLIL 8 Unmodified _VLDRGLIL_ 0 0 0 nc|ENSG00000128604|Q13568-5|IRF5;nc|ENSG00000128604|Q13568-4|IRF5;nc|ENSG00000128604|Q13568|IRF5;nc|ENSG00000128604|Q13568-3|IRF5;ENSG00000128604|ENST00000357234|IRF5 nc|ENSG00000128604|Q13568-5|IRF5 nc|ENSG00000128604|Q13568-5|IRF5 MSMS UPN47_class_I_Rep_3 4 449.7897644042969 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 86.187 1 89.558 89.058 90.058 3.3716 0 0 0 0.40746 1 21601 21601 0.69038 0 1 49098 2596 30742 30756 56587 56587 0.1118725217387464 VLDRLTFDY 9 Unmodified _VLDRLTFDY_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-SECPEP UPN47_class_I_Rep_1 2 571.3322143554688 2 571.298039 1140.58152 0.38399 0.00021937 -0.15112 -8.6332E-05 0.23288 0.00013304 571.2976266936711 61.177 0.37482 64.559 64.281 64.656 3.3815 42 29 2 0 0 0 0.12086 1 14274 14274 7.609 0 1 65637 49099 799 30743 30757 56588 56588 0.016857082691331016 VLDRSLLEY 9 Unmodified _VLDRSLLEY_ 0 0 0 ENSG00000101695|ENST00000217740|RNF125 ENSG00000101695|ENST00000217740|RNF125 ENSG00000101695|ENST00000217740|RNF125 MULTI-MSMS UPN47_class_I_Rep_1 2 554.3056030273438 2 554.305864 1106.59717 0.37139 0.00020586 0.60995 0.0003381 0.98134 0.00054396 554.3058905808665 55.581 0.5358 59.06 58.825 59.361 3.4785 42 32 3 0 0 0 0.26468 4 12603 12565;12603;12647;12657 16.149 3.1066 1 87477 49100 1585 30744 30758 56589;56590;56591;56592 56590 0.04813994786195508 VLDRSLLEY 9 Unmodified _VLDRSLLEY_ 0 0 0 ENSG00000101695|ENST00000217740|RNF125 ENSG00000101695|ENST00000217740|RNF125 ENSG00000101695|ENST00000217740|RNF125 MULTI-MSMS UPN47_class_I_Rep_2 3 554.8086547851562 2 554.305864 1106.59717 0.51581 0.00028592 0.095554 5.2966E-05 0.61137 0.00033888 554.3058256823257 55.649 0.43744 58.959 58.861 59.298 3.3102 41 26 2 0 0 0 0.33908 1 12694 12694 11.495 2.1116 1 75720 49101 1585 30744 30758 56593 56593 0.04813994786195508 VLDRSLLEY 9 Unmodified _VLDRSLLEY_ 0 0 0 ENSG00000101695|ENST00000217740|RNF125 ENSG00000101695|ENST00000217740|RNF125 ENSG00000101695|ENST00000217740|RNF125 MULTI-MSMS UPN47_class_I_Rep_3 4 554.3059692382812 2 554.305864 1106.59717 0.4071 0.00022566 0.22622 0.0001254 0.63332 0.00035105 554.3058330527407 55.958 0.54436 59.136 58.848 59.392 3.1779 63 36 2 0 0 0 0.19147 3 12797 12797;12840;12888 21.537 3.3906 1 71942 49102 1585 30744 30758 56594;56595;56596 56594 0.04813994786195508 VLDRSQDFGK 10 Unmodified _VLDRSQDFGK_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS UPN46_class_I_Rep_3 1 582.8057861328125 2 582.80402 1163.59349 NaN NaN NaN NaN NaN NaN NaN 93.627 1 93.627 93.127 94.127 0 0 0 0 0.53105 1 22697 22697 1.3295 0 1 49103 1129 30745 30759 56597 56597 0.018233250123103062 VLDSFLQGY 9 Unmodified _VLDSFLQGY_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MSMS UPN47_class_I_Rep_2 3 522.2544555664062 2 521.266207 1040.51786 0.041391 2.1576E-05 0.55027 0.00028684 0.59166 0.00030841 521.2661030509311 73.764 0.7579 77.069 76.812 77.57 3.3048 134 76 3 0 0 0 0.20276 1 18191 18191 20.454 0 1 287360 49104 5146 30746 30760 56598 56598 -0.0007765216794268781 VLDSFLQGY 9 Unmodified _VLDSFLQGY_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MSMS UPN47_class_I_Rep_3 4 521.2661743164062 2 521.266207 1040.51786 0.33234 0.00017324 0.067271 3.5066E-05 0.39961 0.00020831 521.2658971433492 73.806 0.75615 77.042 76.77 77.526 3.2363 171 81 3 0 0 0 0.0074098 2 18259 18259;18271 110.67 14.39 1 246000 49105 5146 30746 30760 56599;56600 56599 -0.0007765216794268781 VLDSFLQGY 9 Unmodified _VLDSFLQGY_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MATCH UPN47_class_I_Rep_1 2 2 521.266207 1040.51786 0.29119 0.00015179 0.075861 3.9544E-05 0.36705 0.00019133 521.2659467969253 73.644 0.62823 77.03 76.727 77.356 3.3861 -0.016857 -0.00015608 NaN 110.67 106 60 2 NaN NaN NaN NaN 0 NaN NaN 0 286470 49106 5146 30746 30760 -0.0007765216794268781 VLDSNIFY 8 Unmodified _VLDSNIFY_ 0 0 0 ENST00000512375.1_1_4:84377137-84378237:+|nuORF ENST00000512375.1_1_4:84377137-84378237:+|nuORF ENST00000512375.1_1_4:84377137-84378237:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 485.7476501464844 2 485.74765 969.480748 0.23328 0.00011332 -0.20171 -9.798E-05 0.031569 1.5335E-05 485.7474820735812 62.445 0.64096 65.704 65.383 66.024 3.2594 64 42 2 0 0 0 0.82752 1 14741 14741 12.532 0 1 111690 49107 7192 30747 30761 56601 56601 -0.00521323713712718 VLDSPIRI 8 Unmodified _VLDSPIRI_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS UPN47_class_I_Rep_1 2 456.77874755859375 2 456.779285 911.544017 NaN NaN NaN NaN NaN NaN NaN 40.694 1 44.366 43.866 44.866 3.6719 0 0 0 0.40292 1 8096 8096 6.7232 0 1 + 49108 20518 30748 30762 56602 56602 0.08470661794183343 VLDSVDVRL 9 Unmodified _VLDSVDVRL_ 0 0 0 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 MULTI-MSMS UPN47_class_I_Rep_1 2 508.29248046875 2 508.292756 1014.57096 0.17923 9.1099E-05 -0.49535 -0.00025178 -0.31612 -0.00016068 508.2925515976274 54.884 0.56645 58.385 58.091 58.658 3.5014 49 38 3 0 0 0 0.13244 2 12423 12384;12423 27.629 9.4825 1 103730 49109 4405 30749 30763 56603;56604 56604 0.06425725614712974 VLDSVDVRL 9 Unmodified _VLDSVDVRL_ 0 0 0 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 MULTI-MSMS UPN47_class_I_Rep_2 3 508.29248046875 2 508.292756 1014.57096 0.2256 0.00011467 -0.30114 -0.00015307 -0.075546 -3.8399E-05 508.2926003130181 55.053 0.62448 58.363 58.107 58.731 3.3102 51 35 2 0 0 0 0.15547 2 12502 12502;12538 24.991 4.5764 1 90082 49110 4405 30749 30763 56605;56606 56605 0.06425725614712974 VLDSVDVRL 9 Unmodified _VLDSVDVRL_ 0 0 0 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 MULTI-SECPEP UPN47_class_I_Rep_3 4 508.21142578125 2 508.292756 1014.57096 0.24512 0.00012459 -0.35314 -0.0001795 -0.10801 -5.4902E-05 508.2925382851473 55.226 0.60079 58.404 58.085 58.686 3.1779 55 35 2 0 0 0 0.11817 1 12617 12617 10.8 5.5026 1 127580 49111 4405 30749 30763 56607 56607 0.06425725614712974 VLDVQAWTI 9 Unmodified _VLDVQAWTI_ 0 0 0 L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 522.7897338867188 2 522.78985 1043.56515 0.3221 0.00016839 -0.40551 -0.00021199 -0.083403 -4.3602E-05 522.7895681482773 77.245 0.707 80.66 80.364 81.071 3.4149 125 62 3 0 0 0 0.32682 2 19131 19131;19215 12.241 0 1 256120 49112 8487 30750 30764 56608;56609 56608 0.04510627103036313 VLDVQAWTI 9 Unmodified _VLDVQAWTI_ 0 0 0 L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 522.7902221679688 2 522.78985 1043.56515 0.06401 3.3464E-05 -0.21799 -0.00011396 -0.15398 -8.0498E-05 522.7896509935072 77.445 0.64854 80.776 80.454 81.102 3.3315 149 67 3 0 0 0 0.24936 2 19237 19237;19287 17.113 0 1 214430 49113 8487 30750 30764 56610;56611 56610 0.04510627103036313 VLDVQAWTI 9 Unmodified _VLDVQAWTI_ 0 0 0 L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense L1M1_dup1381|chr3:17452028-17454460:+|1.8616751051864333|0.0192189518274841|6.6|151.0|21|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 522.78955078125 2 522.78985 1043.56515 0.35115 0.00018358 -0.48108 -0.0002515 -0.12993 -6.7927E-05 522.7895675630099 77.447 0.68471 80.716 80.387 81.072 3.269 130 71 2 0 0 0 0.14216 2 19310 19310;19350 26.268 0 1 191480 49114 8487 30750 30764 56612;56613 56612 0.04510627103036313 VLEAKRRHRHR 11 Unmodified _VLEAKRRHRHR_ 0 0 0 REV__ENSG00000183856|ENST00000361170|IQGAP3 REV__ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS UPN48_class_I_Rep_1 5 486.626953125 3 486.62727 1456.85998 0.13938 6.7826E-05 0.33125 0.00016119 0.47063 0.00022902 486.627336372845 100.12 0.67542 103.72 103.45 104.13 3.6084 153 87 3 0 0 0 0.68478 1 24190 24190 0.094841 0.094841 1 320130 + 49115 20803 30751 30765 56614 56614 0.14982473085206038 VLEAKRRHRHR 11 Unmodified _VLEAKRRHRHR_ 0 0 0 REV__ENSG00000183856|ENST00000361170|IQGAP3 REV__ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS UPN48_class_I_Rep_2 6 486.6271667480469 3 486.62727 1456.85998 0.25254 0.00012289 0.52259 0.00025431 0.77514 0.0003772 486.62746608468683 99.875 0.21494 103.63 103.47 103.69 3.7575 48 27 2 0 0 0 0.68081 1 23734 23734 0.45452 0 1 213560 + 49116 20803 30751 30765 56615 56615 0.14982473085206038 VLEALYLWV 9 Unmodified _VLEALYLWV_ 0 0 0 REV__ENST00000460829.5_1_3:184046395-184046545:+|nuORF REV__ENST00000460829.5_1_3:184046395-184046545:+|nuORF MSMS UPN48_class_I_Rep_3 7 553.315673828125 2 553.318243 1104.62193 NaN NaN NaN NaN NaN NaN NaN 60.971 1 64.484 63.984 64.984 3.5129 0 0 0 0.3264 1 13437 13437 9.3474 0.75416 1 + 49117 18537 30752 30766 56616 56616 0.07380674659543729 VLEARKQYL 9 Unmodified _VLEARKQYL_ 0 0 0 HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|13|2|sense HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|13|2|sense HAL1_dup4061|chr3:3137691-3138517:-|1.075369459109076|0.1163166674692649|3.21|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.328369140625 2 560.329673 1118.64479 0.32683 0.00018313 -1.0603 -0.00059411 -0.73347 -0.00041098 560.3285479408155 53.665 1.0477 57.193 56.811 57.858 3.5278 74 61 2 0 0 0 0.43153 1 12020 12020 6.2058 0 1 128290 49118 7883 30753 30767 56617 56617 0.09021693777026485 VLEIFGISP 9 Unmodified _VLEIFGISP_ 0 0 0 REV__ENST00000393196.7_1_17:49239254-49239476:+|nuORF REV__ENST00000393196.7_1_17:49239254-49239476:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 487.791015625 2 487.781493 973.548434 0.1839 8.9703E-05 0.12886 6.2857E-05 0.31276 0.00015256 487.7814767962987 75.898 0.57647 79.155 78.877 79.454 3.2573 100 54 2 0 0 0 0.36392 1 18923 18923 10.074 0 1 145490 + 49119 22095 30754 30768 56618 56618 0.06060126217107609 VLEILRQSF 9 Unmodified _VLEILRQSF_ 0 0 0 L1MC5a_dup10071|chrX:119595991-119596664:+|1.005017449112951|0.0515942255659059|4.28|151.0|17|2|sense L1MC5a_dup10071|chrX:119595991-119596664:+|1.005017449112951|0.0515942255659059|4.28|151.0|17|2|sense L1MC5a_dup10071|chrX:119595991-119596664:+|1.005017449112951|0.0515942255659059|4.28|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 552.748779296875 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 71.848 1 75.375 74.875 75.875 3.5266 0 0 0 0.39518 1 16713 16713 1.8442 0 1 49120 11704 30755 30769 56619 56619 0.08622291402775772 VLEKDNRIY 9 Unmodified _VLEKDNRIY_ 0 0 0 REV__ENSG00000139537|ENST00000320516|CCDC65 REV__ENSG00000139537|ENST00000320516|CCDC65 MULTI-MSMS UPN47_class_I_Rep_3 4 575.8181762695312 2 575.316763 1148.61897 0.46039 0.00026487 -0.052442 -3.0171E-05 0.40795 0.0002347 575.3167167269108 49.518 0.80506 52.745 52.468 53.273 3.2262 83 47 3 0 0 0 0.35081 1 10813 10813 10.824 0 1 186300 + 49121 19315 30756 30770 56620 56620 0.05060799534749094 VLEKKERHR 9 Unmodified _VLEKKERHR_ 0 0 0 ENST00000471215.1_1_7:73111917-73112213:+|nuORF;ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000436944.5_1_7:73101164-73117856:+|nuORF ENST00000471215.1_1_7:73111917-73112213:+|nuORF ENST00000471215.1_1_7:73111917-73112213:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 597.8565063476562 2 597.856921 1193.69929 0.48266 0.00028856 -0.63304 -0.00037847 -0.15038 -8.9904E-05 597.856207419792 83.386 0.26195 87.067 87.028 87.29 3.6814 49 30 2 0 0 0 0.50088 1 19817 19817 0.52476 0 1 112810 49122 1088 30757 30771 56621 56621 0.11018705648439209 VLELGGFTFL 10 Unmodified _VLELGGFTFL_ 0 0 0 REV__L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|71|3|anti-sense REV__L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|71|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.3084716796875 2 548.307875 1094.6012 0.39315 0.00021557 0.45121 0.0002474 0.84437 0.00046297 548.3081614810126 101.77 0.036209 101.77 101.74 101.78 0 6 4 2 0 0 0 0.51565 1 24832 24832 10.074 0 1 77515 + 49123 24329 30758 30772 56622 56622 0.05768084279907271 VLELGGFTFL 10 Unmodified _VLELGGFTFL_ 0 0 0 REV__L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|71|3|anti-sense REV__L1M3e_dup600|chr12:70214488-70215631:-|1.1400052246654542|0.0430167932999334|4.73|151.0|71|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 548.307875 1094.6012 0.39315 0.00021557 0.45121 0.0002474 0.84437 0.00046297 548.3081614810126 101.77 0.036209 101.77 101.74 101.78 0 0 0 NaN 10.074 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 77515 + 49124 24329 30758 30772 0.05768084279907271 VLELTTFNPD 10 Unmodified _VLELTTFNPD_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MSMS UPN47_class_I_Rep_3 4 574.7960205078125 2 574.795329 1147.5761 NaN NaN NaN NaN NaN NaN NaN 74.52 1 77.766 77.266 78.266 3.2464 0 0 0 0.53105 1 18448 18448 7.609 0 1 49125 2688 30759 30773 56623 56623 0.008219846866495573 VLELYPQL 8 Unmodified _VLELYPQL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MSMS UPN48_class_I_Rep_1 5 487.78155517578125 2 487.781493 973.548434 NaN NaN NaN NaN NaN NaN NaN 75.895 1 79.395 78.895 79.895 3.4996 0 0 0 0.39996 1 18008 18008 7.9102 0 1 49126 4870 30760 30774 56624 56624 0.06060126217084871 VLELYPQL 8 Unmodified _VLELYPQL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS UPN48_class_I_Rep_2 6 487.7906188964844 2 487.781493 973.548434 0.24964 0.00012177 -0.48011 -0.00023419 -0.23047 -0.00011242 487.7811261177533 75.682 0.13213 79.283 79.242 79.375 3.6011 20 15 2 0 0 0 0.82752 1 17851 17851 7.9102 0 1 46205 49127 4870 30760 30774 56625 56625 0.06060126217084871 VLELYPQL 8 Unmodified _VLELYPQL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MSMS UPN48_class_I_Rep_3 7 487.79083251953125 2 487.781493 973.548434 NaN NaN NaN NaN NaN NaN NaN 75.816 1 79.399 78.899 79.899 3.5831 0 0 0 0.39996 1 17833 17833 7.9102 0 1 49128 4870 30760 30774 56626 56626 0.06060126217084871 VLENGEEKL 9 Unmodified _VLENGEEKL_ 0 0 0 REV__ENSG00000025772|ENST00000372813|TOMM34 REV__ENSG00000025772|ENST00000372813|TOMM34 MSMS UPN48_class_I_Rep_1 5 515.7745971679688 2 515.774396 1029.53424 NaN NaN NaN NaN NaN NaN NaN 52.264 1 55.787 55.287 56.287 3.5227 0 0 0 0.31276 1 10854 10854 10.074 1.4806 1 + 49129 17619 30761 30775 56627 56627 0.02065428998139396 VLENGEEKL 9 Unmodified _VLENGEEKL_ 0 0 0 REV__ENSG00000025772|ENST00000372813|TOMM34 REV__ENSG00000025772|ENST00000372813|TOMM34 MSMS UPN48_class_I_Rep_3 7 515.7742919921875 2 515.774396 1029.53424 NaN NaN NaN NaN NaN NaN NaN 52.244 1 55.842 55.342 56.342 3.5979 0 0 0 0.31276 1 10775 10775 10.074 0.6908 1 + 49130 17619 30761 30775 56628 56628 0.02065428998139396 VLEPLLLLLL 10 Unmodified _VLEPLLLLLL_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MSMS UPN47_class_I_Rep_1 2 568.3480224609375 2 568.388668 1134.76278 NaN NaN NaN NaN NaN NaN NaN 113.25 1 116.83 116.33 117.33 3.572 0 0 0 0.53105 1 27940 27940 0 0 1 49131 1235 30762 30776 56629 56629 0.20079253313019763 VLEQDSGQW 9 Unmodified _VLEQDSGQW_ 0 0 0 SPEG|p.E198Dfs*40|1|0.18|ENSG00000072195|chr2:219444939-219444940|-/C|frameshift_variant SPEG|p.E198Dfs*40|1|0.18|ENSG00000072195|chr2:219444939-219444940|-/C|frameshift_variant SPEG|p.E198Dfs*40|1|0.18|ENSG00000072195|chr2:219444939-219444940|-/C|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 531.2479248046875 2 531.248546 1060.48254 0.027259 1.4481E-05 -0.51951 -0.00027599 -0.49225 -0.00026151 531.2483094667667 27.702 0.52154 27.702 27.552 28.073 0 77 40 2 0 0 0 0.28552 2 4140 4140;4222 14.838 0 1 102140 49132 32839 30763 30777 56630;56631 56630 -0.04528314695744484 VLERGPVLQL 10 Unmodified _VLERGPVLQL_ 0 0 0 nc|ENSG00000076706|P43121-2|MCAM;ENSG00000076706|ENST00000264036|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF nc|ENSG00000076706|P43121-2|MCAM;ENSG00000076706|ENST00000264036|MCAM ENSG00000076706|ENST00000264036|MCAM MULTI-MSMS UPN48_class_I_Rep_1 5 562.3432006835938 2 562.345323 1122.67609 0.46404 0.00026095 -3.7228 -0.0020935 -3.2587 -0.0018325 562.3432999949331 81.909 0.040543 85.485 85.465 85.506 3.5753 7 4 2 0 0 0 0.56333 1 19550 19550 1.4819 0.15237 1 98743 49133 16638;1161 30764 30778 56632 56632 0.11966266811123205 VLERGPVLQL 10 Unmodified _VLERGPVLQL_ 0 0 0 nc|ENSG00000076706|P43121-2|MCAM;ENSG00000076706|ENST00000264036|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF nc|ENSG00000076706|P43121-2|MCAM;ENSG00000076706|ENST00000264036|MCAM ENSG00000076706|ENST00000264036|MCAM MULTI-MATCH UPN47_class_I_Rep_1 2 2 562.345323 1122.67609 0.43031 0.00024198 -2.9162 -0.0016399 -2.4859 -0.0013979 562.3437303268203 81.615 0.10302 85.127 85.043 85.146 3.5122 -0.13016 0.00047241 NaN 1.4819 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 47219 49134 16638;1161 30764 30778 0.11966266811123205 VLERVAPHFKA 11 Unmodified _VLERVAPHFKA_ 0 0 0 REV__ENSG00000135541|ENST00000265602|AHI1 REV__ENSG00000135541|ENST00000265602|AHI1 MSMS UPN48_class_I_Rep_1 5 633.8713989257812 2 633.869497 1265.72444 NaN NaN NaN NaN NaN NaN NaN 87.559 1 91.178 90.678 91.678 3.6187 0 0 0 0.38417 1 20982 20982 2.4985 0.21571 1 + 49135 19145 30765 30779 56633 56633 0.10220760451034039 VLETYQKV 8 Unmodified _VLETYQKV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MULTI-MSMS UPN47_class_I_Rep_1 2 490.2763977050781 2 490.276575 978.538597 -0.26439 -0.00012962 0.22754 0.00011156 -0.036855 -1.8069E-05 490.276681479092 39.286 0.51929 42.951 42.76 43.28 3.6652 64 37 2 0 0 0 0.82752 2 7713 7630;7713 7.9102 0 1 81213 49136 5126 30766 30780 56634;56635 56635 0.04846938211710494 VLETYQKV 8 Unmodified _VLETYQKV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MULTI-MSMS UPN47_class_I_Rep_3 4 490.2761535644531 2 490.276575 978.538597 -0.28681 -0.00014062 0.26283 0.00012886 -0.023976 -1.1755E-05 490.2765639665919 39.809 0.65037 43.046 42.735 43.385 3.2372 63 45 2 0 0 0 0.82752 1 7940 7940 7.9102 0 1 99574 49137 5126 30766 30780 56636 56636 0.04846938211710494 VLEVRVIGF 9 Unmodified _VLEVRVIGF_ 0 0 0 REV__L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|186|3|anti-sense REV__L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|186|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.3153686523438 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.96 1 111.5 111 112 3.5382 0 0 0 0.31276 1 26381 26381 10.074 0 1 + 49138 25041 30767 30781 56637 56637 0.10343210236646883 VLEWVNGQI 9 Unmodified _VLEWVNGQI_ 0 0 0 L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|15|1|sense L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|15|1|sense L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.2693481445312 2 529.287474 1056.5604 0.3544 0.00018758 1.0297 0.00054498 1.3841 0.00073256 529.2876962773458 61.654 0.5986 65.022 64.737 65.336 3.3681 81 43 3 0 0 0 0.25207 1 14458 14458 16.942 0 1 137060 49139 12013 30768 30782 56638 56638 0.034377429602727716 VLEWVNGQI 9 Unmodified _VLEWVNGQI_ 0 0 0 L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|15|1|sense L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|15|1|sense L1MD2_dup5902|chrX:20248667-20250195:-|2.311406730742632|0.0424431502606241|5.77|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.26953125 2 529.287474 1056.5604 0.33017 0.00017476 0.65299 0.00034562 0.98316 0.00052037 529.2874823032021 62.005 0.54412 65.171 64.879 65.423 3.1667 94 38 3 0 0 0 0.25207 2 14630 14630;14672 16.942 0 1 127350 49140 12013 30768 30782 56639;56640 56639 0.034377429602727716 VLEYINIQV 9 Unmodified _VLEYINIQV_ 0 0 0 ERVL-E-int_dup320|chr1:85807115-85808723:+|1.5553818194063278|0.0063679597323959|7.93|150.0|9|1|sense ERVL-E-int_dup320|chr1:85807115-85808723:+|1.5553818194063278|0.0063679597323959|7.93|150.0|9|1|sense ERVL-E-int_dup320|chr1:85807115-85808723:+|1.5553818194063278|0.0063679597323959|7.93|150.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 545.8104858398438 2 545.810782 1089.60701 NaN NaN NaN NaN NaN NaN NaN 85.347 1 88.718 88.218 89.218 3.3716 0 0 0 0.31276 1 21387 21387 10.074 0 1 49141 7751 30769 30783 56641 56641 0.0657918279155183 VLFAFRVF 8 Unmodified _VLFAFRVF_ 0 0 0 L1PA17_dup1727|chr6:57121540-57122893:+|1.081935065453998|0.3817324324760628|1.5|151.0|49|1|anti-sense L1PA17_dup1727|chr6:57121540-57122893:+|1.081935065453998|0.3817324324760628|1.5|151.0|49|1|anti-sense L1PA17_dup1727|chr6:57121540-57122893:+|1.081935065453998|0.3817324324760628|1.5|151.0|49|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.8156433105469 2 499.794738 997.574923 NaN NaN NaN NaN NaN NaN NaN 28.395 1 28.395 27.895 28.895 0 0 0 0 0.40581 1 4353 4353 2.8892 0 1 49142 14155 30770 30784 56642 56642 0.07603859899086274 VLFAPIGTALS 11 Unmodified _VLFAPIGTALS_ 0 0 0 REV__ENSG00000164530|ENST00000373674|PI16 REV__ENSG00000164530|ENST00000373674|PI16 MSMS UPN48_class_I_Rep_1 5 544.7674560546875 2 544.82115 1087.62775 NaN NaN NaN NaN NaN NaN NaN 59.973 1 63.453 62.953 63.953 3.4801 0 0 0 0.28775 1 13225 13225 13.042 0 1 + 49143 20068 30771 30785 56643 56643 0.08743773171227076 VLFEMYLWVL 10 Unmodified _VLFEMYLWVL_ 0 0 0 REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|134|2|anti-sense REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|134|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 438.23980712890625 3 438.238516 1311.69372 0.039336 1.7238E-05 2.4078 0.0010552 2.4472 0.0010724 438.57400165033806 66.648 0.16425 70.1 69.973 70.138 3.4516 15 11 2 0 0 0 0.84575 1 15227 15227 1.9064 0 1 75618 + 49144 29262 30772 30786 56644 56644 0.05033846021751742 VLFEMYLWVL 10 Unmodified _VLFEMYLWVL_ 0 0 0 REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|134|2|anti-sense REV__L1PA15_dup63|chr1:50807624-50809973:+|1.0179887969294132|0.0128256658802872|6.31|150.0|134|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 438.238516 1311.69372 -0.37594 -0.00016475 2.7113 0.0011882 2.3354 0.0010234 438.23973545076325 67.042 0.14503 70.233 70.126 70.271 3.1914 0.066666 9.5215E-05 NaN 1.9064 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 33840 + 49145 29262 30772 30786 0.05033846021751742 VLFFFFNCT 9 Unmodified _VLFFFFNCT_ 0 0 0 REV__ENST00000248975.5_1_22:32353337-32353418:+|nuORF REV__ENST00000248975.5_1_22:32353337-32353418:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 569.3124389648438 2 569.275521 1136.53649 0.43187 0.00024585 -1.1019 -0.00062728 -0.67002 -0.00038143 569.2747434046146 64.287 0.54355 67.461 67.227 67.77 3.1741 43 36 2 0 0 0 0.11959 1 15324 15324 7.9102 0.62092 1 138520 + 49146 21518 30773 30787 56645 56645 -0.026318137977341394 VLFFHLKE 8 Unmodified _VLFFHLKE_ 0 0 0 HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|2|1|sense HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|2|1|sense HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 516.7967529296875 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 20.937 1 24.581 24.081 25.081 3.6436 0 0 0 0.40738 1 2191 2191 0.79363 0 1 49147 7956 30774 30788 56646 56646 0.06587538690882866 VLFFHLKE 8 Unmodified _VLFFHLKE_ 0 0 0 HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|2|1|sense HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|2|1|sense HAL1ME_dup2226|chr4:73233732-73234660:-|1.54822619942392|0.0786864364453683|4.3|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 516.7378540039062 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 113.3 1 116.82 116.32 117.32 3.5171 0 0 0 0.40738 1 27553 27553 0.79363 0 1 49148 7956 30774 30788 56647 56647 0.06587538690882866 VLFFVFLF 8 Unmodified _VLFFVFLF_ 0 0 0 MLT1J_dup2518|chr3:11507760-11508058:-|1.218382425201623|0.0088285429836456|7.11|151.0|3|1|sense;AluSq_dup7307|chr7:75373812-75374115:-|2.92638428525287|0.1054723178540598|4.79|151.0|12|1|anti-sense;AluSq_dup7249|chr7:72990985-72991288:+|1.8823628623360276|0.1071344201087598|4.14|150.0|12|1|anti-sense MLT1J_dup2518|chr3:11507760-11508058:-|1.218382425201623|0.0088285429836456|7.11|151.0|3|1|sense MLT1J_dup2518|chr3:11507760-11508058:-|1.218382425201623|0.0088285429836456|7.11|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 516.301513671875 2 516.301865 1030.58918 NaN NaN NaN NaN NaN NaN NaN 50.804 1 54.02 53.52 54.52 3.2163 0 0 0 0.40738 1 11255 11255 0.79363 0 1 49149 244 30775 30789 56648 56648 0.07510512327348806 VLFFVPART 9 Unmodified _VLFFVPART_ 0 0 0 ENST00000372285.7_1_20:44746966-44750890:+|nuORF ENST00000372285.7_1_20:44746966-44750890:+|nuORF ENST00000372285.7_1_20:44746966-44750890:+|nuORF MSMS UPN48_class_I_Rep_3 7 525.3095703125 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 20.312 1 23.942 23.442 24.442 3.6293 0 0 0 0.40038 1 1702 1702 0.6015 0 1 49150 6397 30776 30790 56649 56649 0.08459227582216045 VLFFWVVG 8 Unmodified _VLFFWVVG_ 0 0 0 REV__L1PA7_dup9458|chr10:96573706-96575082:+|2.7698507962340937|0.068215453401184|5.34|151.0|47|1|anti-sense REV__L1PA7_dup9458|chr10:96573706-96575082:+|2.7698507962340937|0.068215453401184|5.34|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.776611328125 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 23.387 1 27.138 26.638 27.638 3.7507 0 0 0 0.40738 1 2551 2551 0.79363 0 1 + 49151 28999 30777 30791 56650 56650 0.05332768633468277 VLFGFAFAVL 10 Unmodified _VLFGFAFAVL_ 0 0 0 REV__L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|125|1|anti-sense REV__L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|125|1|anti-sense MSMS UPN47_class_I_Rep_1 2 542.3152465820312 2 542.315503 1082.61645 NaN NaN NaN NaN NaN NaN NaN 64.09 1 67.446 66.946 67.946 3.3557 0 0 0 0.53105 1 15207 15207 4.3292 0.73274 1 + 49152 29459 30778 30792 56651 56651 0.07844995867731086 VLFGFAFAVL 10 Unmodified _VLFGFAFAVL_ 0 0 0 REV__L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|125|1|anti-sense REV__L1PA17_dup2535|chrX:57144505-57148051:-|1.4083784154879329|0.0334148956192882|5.4|150.0|125|1|anti-sense MSMS UPN47_class_I_Rep_1 2 542.31396484375 2 542.315503 1082.61645 NaN NaN NaN NaN NaN NaN NaN 64.354 1 67.709 67.209 68.209 3.3557 0 0 0 0.53105 1 15286 15286 7.9102 0 1 + 49153 29459 30778 30792 56652 56652 0.07844995867731086 VLFGWLAAP 9 Unmodified _VLFGWLAAP_ 0 0 0 REV__ENST00000445792.7_1_X:305849-322301:-|nuORF REV__ENST00000445792.7_1_X:305849-322301:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 487.27899169921875 2 487.278921 972.543289 0.1459 7.1094E-05 -0.86275 -0.0004204 -0.71685 -0.00034931 487.2783372032702 45.083 0.5912 48.6 48.289 48.88 3.5162 59 43 2 0 0 0 0.2896 1 8729 8729 14.582 0 1 144220 + 49154 22358 30779 30793 56653 56653 0.05591867145119522 VLFGWLAAP 9 Unmodified _VLFGWLAAP_ 0 0 0 REV__ENST00000445792.7_1_X:305849-322301:-|nuORF REV__ENST00000445792.7_1_X:305849-322301:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 487.27801513671875 2 487.278921 972.543289 0.17273 8.4167E-05 -0.80496 -0.00039224 -0.63223 -0.00030807 487.2783343811563 44.69 0.56438 48.451 48.237 48.802 3.7617 75 39 2 0 0 0 0.10758 1 8632 8632 14.582 5.2343 1 151910 + 49155 22358 30779 30793 56654 56654 0.05591867145119522 VLFHHRGE 8 Unmodified _VLFHHRGE_ 0 0 0 REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF MSMS UPN46_class_I_Rep_3 1 497.7649841308594 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 112.09 1 112.09 111.59 112.59 0 0 0 0 0.40738 1 27664 27664 0.79363 0 1 + 49156 17918 30780 30794 56655 56655 0.01743142568705025 VLFHHRGE 8 Unmodified _VLFHHRGE_ 0 0 0 REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF MSMS UPN48_class_I_Rep_1 5 497.78289794921875 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 36.94 1 40.447 39.947 40.947 3.507 0 0 0 0.40738 1 6225 6225 0.79363 0 1 + 49157 17918 30780 30794 56656 56656 0.01743142568705025 VLFHHRGE 8 Unmodified _VLFHHRGE_ 0 0 0 REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF MSMS UPN48_class_I_Rep_3 7 497.76568603515625 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 19.758 1 23.379 22.879 23.879 3.6215 0 0 0 0.40738 1 1554 1554 0.79363 0 1 + 49158 17918 30780 30794 56657 56657 0.01743142568705025 VLFHRFFY 8 Unmodified _VLFHRFFY_ 0 0 0 ENST00000466101.1_1_3:156877139-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1 ENST00000466101.1_1_3:156877139-156877916:-|nuORF ENST00000466101.1_1_3:156877139-156877916:-|nuORF MSMS UPN47_class_I_Rep_3 4 564.7772216796875 2 564.803094 1127.59164 NaN NaN NaN NaN NaN NaN NaN 81.646 1 84.969 84.469 85.469 3.3231 0 0 0 0.40604 1 20439 20439 2.5775 0 1 49159 4030 30781 30795 56658 56658 0.03294360785025674 VLFHRFVGY 9 Unmodified _VLFHRFVGY_ 0 0 0 REV__L1MEf_dup5136|chr7:72906952-72907490:-|1.1491537652566357|0.0464132272553913|4.63|151.0|41|3|anti-sense REV__L1MEf_dup5136|chr7:72906952-72907490:-|1.1491537652566357|0.0464132272553913|4.63|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.3135986328125 2 569.313826 1136.6131 0.39693 0.00022598 -1.0424 -0.00059345 -0.64548 -0.00036748 569.3131720484605 64.336 0.25412 67.591 67.503 67.757 3.2556 31 19 2 0 0 0 0.45688 1 15339 15339 4.756 0.42677 1 111190 + 49160 28659 30782 30796 56659 56659 0.05025745813759386 VLFIGEPFPS 10 Unmodified _VLFIGEPFPS_ 0 0 0 ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 553.3004150390625 2 553.30005 1104.58555 0.50565 0.00027978 -0.038978 -2.1567E-05 0.46667 0.00025821 553.2998079785073 88.522 0.14906 92.145 92.059 92.208 3.6229 37 19 3 0 0 0 0.46161 1 21237 21237 14.838 2.3067 1 127880 49161 5897 30783 30797 56660 56660 0.037437977628542285 VLFIGEPFPS 10 Unmodified _VLFIGEPFPS_ 0 0 0 ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF MSMS UPN48_class_I_Rep_1 5 553.3002319335938 2 553.30005 1104.58555 NaN NaN NaN NaN NaN NaN NaN 88.39 1 92.013 91.513 92.513 3.6229 0 0 0 0.53105 1 21208 21208 14.838 2.3067 1 49162 5897 30783 30797 56661 56661 0.037437977628542285 VLFIGEPFPS 10 Unmodified _VLFIGEPFPS_ 0 0 0 ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 553.3007202148438 2 553.30005 1104.58555 0.40113 0.00022195 0.21881 0.00012107 0.61994 0.00034301 553.3001192465805 88.575 0.33948 92.385 92.127 92.467 3.8104 65 41 2 0 0 0 0.38932 1 21030 21030 20.454 2.3186 1 155680 49163 5897 30783 30797 56662 56662 0.037437977628542285 VLFIGEPFPS 10 Unmodified _VLFIGEPFPS_ 0 0 0 ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF ENST00000238616.9_1_14:75549190-75549412:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 553.3009643554688 2 553.30005 1104.58555 0.40079 0.00022176 0.063596 3.5188E-05 0.46438 0.00025694 553.2999977719053 88.802 0.2037 92.631 92.486 92.689 3.8293 43 28 2 0 0 0 0.46161 1 21058 21058 14.838 2.3067 1 139100 49164 5897 30783 30797 56663 56663 0.037437977628542285 VLFIKFFPR 9 Unmodified _VLFIKFFPR_ 0 0 0 L1MA5A_dup3076|chr17:18012698-18013919:+|1.9279955282239367|0.4515334057507627|2.09|151.0|93|3|anti-sense L1MA5A_dup3076|chr17:18012698-18013919:+|1.9279955282239367|0.4515334057507627|2.09|151.0|93|3|anti-sense L1MA5A_dup3076|chr17:18012698-18013919:+|1.9279955282239367|0.4515334057507627|2.09|151.0|93|3|anti-sense MSMS UPN47_class_I_Rep_3 4 583.8582153320312 2 583.85787 1165.70119 NaN NaN NaN NaN NaN NaN NaN 89.786 1 93.184 92.684 93.684 3.3976 0 0 0 0.4007 1 22513 22513 0.52476 0 1 49165 9945 30784 30798 56664 56664 0.12496366404343462 VLFIVLRRY 9 Unmodified _VLFIVLRRY_ 0 0 0 ENST00000430069.5_1_3:176914178-176914250:-|nuORF ENST00000430069.5_1_3:176914178-176914250:-|nuORF ENST00000430069.5_1_3:176914178-176914250:-|nuORF MSMS UPN47_class_I_Rep_3 4 589.8718872070312 2 589.874051 1177.73355 NaN NaN NaN NaN NaN NaN NaN 89.915 1 93.313 92.813 93.813 3.3976 0 0 0 0.39326 1 22542 22542 2.3027 0.4585 1 49166 6717 30785 30799 56665 56665 0.15179153807366674 VLFKEELI 8 Unmodified _VLFKEELI_ 0 0 0 REV__L1MB2_dup1338|chr3:25653730-25656041:+|4.167904633578664|0.1655991657451747|4.65|151.0|115|2|anti-sense REV__L1MB2_dup1338|chr3:25653730-25656041:+|4.167904633578664|0.1655991657451747|4.65|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7806701660156 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 83.299 1 86.71 86.21 87.21 3.4116 0 0 0 0.40581 1 20762 20762 2.8892 0 1 + 49167 25694 30786 30800 56666 56666 0.0845269925117691 VLFKIALAI 9 Unmodified _VLFKIALAI_ 0 0 0 L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|145|2|anti-sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|145|2|anti-sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|145|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.3329162597656 2 494.333696 986.652839 0.14153 6.9965E-05 -1.3635 -0.00067401 -1.2219 -0.00060404 494.3330173179983 27.351 0.028507 31.107 31.091 31.12 3.7555 5 3 2 0 0 0 0.50582 1 3582 3582 0 0 1 25656 49168 10119 30787 30801 56667 56667 0.15897872764435306 VLFKLIRISRI 11 Unmodified _VLFKLIRISRI_ 0 0 0 REV__nc|ENSG00000117013|P56696-2|KCNQ4 REV__nc|ENSG00000117013|P56696-2|KCNQ4 MSMS UPN47_class_I_Rep_1 2 453.3056335449219 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 115.19 1 118.77 118.27 119.27 3.5809 0 0 0 0.38417 1 28491 28491 0.094841 0 1 + 49169 18620 30788 30802 56668 56668 0.23275331858394566 VLFKLIRISRI 11 Unmodified _VLFKLIRISRI_ 0 0 0 REV__nc|ENSG00000117013|P56696-2|KCNQ4 REV__nc|ENSG00000117013|P56696-2|KCNQ4 MSMS UPN47_class_I_Rep_1 2 453.30535888671875 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.34 1 120.94 120.44 121.44 3.6036 0 0 0 0.38417 1 29087 29087 0.094841 0 1 + 49170 18620 30788 30802 56669 56669 0.23275331858394566 VLFKLIRISRI 11 Unmodified _VLFKLIRISRI_ 0 0 0 REV__nc|ENSG00000117013|P56696-2|KCNQ4 REV__nc|ENSG00000117013|P56696-2|KCNQ4 MSMS UPN47_class_I_Rep_3 4 453.3056945800781 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.31 120.81 121.81 3.4238 0 0 0 0.38417 1 29058 29058 0.094841 0 1 + 49171 18620 30788 30802 56670 56670 0.23275331858394566 VLFKLIRISRI 11 Unmodified _VLFKLIRISRI_ 0 0 0 REV__nc|ENSG00000117013|P56696-2|KCNQ4 REV__nc|ENSG00000117013|P56696-2|KCNQ4 MSMS UPN47_class_I_Rep_3 4 453.3052673339844 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 119.18 1 122.6 122.1 123.1 3.4157 0 0 0 0.38417 1 29427 29427 0.094841 0 1 + 49172 18620 30788 30802 56671 56671 0.23275331858394566 VLFKNFYPF 9 Unmodified _VLFKNFYPF_ 0 0 0 L1M4a2_dup861|chr7:70227517-70231200:-|2.7025633648473537|0.0288111112692374|6.55|149.0|209|2|anti-sense L1M4a2_dup861|chr7:70227517-70231200:-|2.7025633648473537|0.0288111112692374|6.55|149.0|209|2|anti-sense L1M4a2_dup861|chr7:70227517-70231200:-|2.7025633648473537|0.0288111112692374|6.55|149.0|209|2|anti-sense MSMS UPN48_class_I_Rep_2 6 587.8054809570312 2 587.81841 1173.62227 NaN NaN NaN NaN NaN NaN NaN 42.777 1 46.534 46.034 47.034 3.7579 0 0 0 0.24828 1 7959 7959 13.508 2.684 1 49173 8986 30789 30803 56672 56672 0.042400943794064005 VLFLILEEE 9 Unmodified _VLFLILEEE_ 0 0 0 L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|109|2|anti-sense L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|109|2|anti-sense L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|109|2|anti-sense MSMS UPN47_class_I_Rep_1 2 552.8120727539062 2 552.81299 1103.61143 NaN NaN NaN NaN NaN NaN NaN 17.346 1 20.897 20.397 21.397 3.5504 0 0 0 0.4029 1 1279 1279 0 0 1 49174 8657 30790 30804 56673 56673 0.06376647214460718 VLFLKILILYL 11 Unmodified _VLFLKILILYL_ 0 0 0 REV__L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense REV__L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense MSMS UPN46_class_I_Rep_3 1 450.2345275878906 3 449.971987 1346.89413 NaN NaN NaN NaN NaN NaN NaN 104.08 1 104.08 103.58 104.58 0 0 0 0 0.38417 1 25411 25411 0.094841 0 1 + 49175 27348 30791 30805 56674 56674 0.23456063680919215 VLFLKILILYL 11 Unmodified _VLFLKILILYL_ 0 0 0 REV__L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense REV__L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense MSMS UPN48_class_I_Rep_2 6 450.22601318359375 3 449.971987 1346.89413 NaN NaN NaN NaN NaN NaN NaN 95.3 1 99.081 98.581 99.581 3.7804 0 0 0 0.38417 1 22654 22654 0.094841 0 1 + 49176 27348 30791 30805 56675 56675 0.23456063680919215 VLFLMRRQ 8 Unmodified _VLFLMRRQ_ 0 0 0 L1M4b_dup1058|chr4:88068652-88070548:-|2.5149217557996475|0.3932297299189548|2.68|151.0|115|2|anti-sense L1M4b_dup1058|chr4:88068652-88070548:-|2.5149217557996475|0.3932297299189548|2.68|151.0|115|2|anti-sense L1M4b_dup1058|chr4:88068652-88070548:-|2.5149217557996475|0.3932297299189548|2.68|151.0|115|2|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8165893554688 2 531.815679 1061.6168 NaN NaN NaN NaN NaN NaN NaN 84.845 1 84.845 84.345 85.345 0 0 0 0 0.40746 1 20209 20209 0.69038 0 1 49177 8990 30792 30806 56676 56676 0.08846092315957321 VLFLSLFLFV 10 Unmodified _VLFLSLFLFV_ 0 0 0 L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|191|1|anti-sense L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|191|1|anti-sense L1MCc_dup765|chr3:188804615-188808435:-|1.0268671835105752|0.1042156390576297|3.3|149.0|191|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.3675537109375 2 599.367736 1196.72092 -0.10955 -6.566E-05 -0.18902 -0.00011329 -0.29857 -0.00017895 599.3677987420123 13.031 0.12838 16.488 16.425 16.553 3.457 18 10 2 0 0 0 0.56543 1 213 213 0 0 1 55690 49178 11869 30793 30807 56677 56677 0.13042697624428 VLFLVNLF 8 Unmodified _VLFLVNLF_ 0 0 0 L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|41|1|anti-sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|41|1|anti-sense L1PA12_dup953|chr9:124631660-124632561:-|1.0759679392637618|0.0159743104397747|6.07|150.0|41|1|anti-sense MSMS UPN46_class_I_Rep_3 1 482.79534912109375 2 482.796946 963.57934 NaN NaN NaN NaN NaN NaN NaN 36.441 1 36.441 35.941 36.941 0 0 0 0 0.40746 1 6755 6755 0.69038 0 1 49179 13726 30794 30808 56678 56678 0.09609324321979784 VLFPALLT 8 Unmodified _VLFPALLT_ 0 0 0 L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|58|2|anti-sense L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|58|2|anti-sense L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2738342285156 2 437.275847 872.537141 NaN NaN NaN NaN NaN NaN NaN 56.234 1 59.736 59.236 60.236 3.5014 0 0 0 0.40738 1 12080 12080 0.79363 0 1 49180 13465 30795 30809 56679 56679 0.09577348913592232 VLFPNWRLFG 10 Unmodified _VLFPNWRLFG_ 0 0 0 REV__Tigger1_dup9453|chr13:24481875-24482818:+|2.887023248905337|0.1439655496996074|4.33|151.0|14|2|sense REV__Tigger1_dup9453|chr13:24481875-24482818:+|2.887023248905337|0.1439655496996074|4.33|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 624.9393920898438 2 624.848033 1247.68151 NaN NaN NaN NaN NaN NaN NaN 48.859 1 52.383 51.883 52.883 3.5239 0 0 0 0.53105 1 9812 9812 1.6526 0 1 + 49181 32570 30796 30810 56680 56680 0.06757990393589353 VLFPYGTRE 9 Unmodified _VLFPYGTRE_ 0 0 0 LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|8|1|sense LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|8|1|sense LTR10C_dup452|chr19:20819191-20819768:-|1.5150335968023376|0.1442007139995274|3.39|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 540.8056640625 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 53.155 1 53.155 52.655 53.655 0 0 0 0 0.2088 1 11417 11417 15.847 1.0089 1 49182 15515 30797 30811 56681 56681 0.023337429602634074 VLFQHNEI 8 Unmodified _VLFQHNEI_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|171|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|171|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|171|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.26666259765625 2 500.266542 998.51853 0.13778 6.8926E-05 -0.62208 -0.00031121 -0.4843 -0.00024228 500.26650881119525 55.004 0.50846 58.506 58.257 58.765 3.5014 47 32 2 0 0 0 0.82752 1 12447 12447 7.9102 2.6795 1 59999 49183 13332 30798 30812 56682 56682 0.01921187271761937 VLFQHNEI 8 Unmodified _VLFQHNEI_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|171|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|171|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|171|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 500.7769470214844 2 500.266542 998.51853 0.13778 6.8926E-05 -0.62208 -0.00031121 -0.4843 -0.00024228 500.26650881119525 55.004 0.50846 58.506 58.257 58.765 3.5014 47 32 2 0 0 0 0.72333 1 12437 12437 21.747 5.8995 1 59999 49184 13332 30798 30812 56683 56683 0.01921187271761937 VLFRIYFFV 9 Unmodified _VLFRIYFFV_ 0 0 0 REV__L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|34|1|anti-sense REV__L1MB8_dup9079|chrX:73985324-73986079:-|1.860182258842909|0.1065338556072246|4.13|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 602.2784423828125 2 602.349877 1202.6852 NaN NaN NaN NaN NaN NaN NaN 43.425 1 47.113 46.613 47.613 3.6875 0 0 0 0.40038 1 8928 8928 0.6015 0 1 + 49185 26448 30799 30813 56684 56684 0.09196660167435766 VLFRNKKKVLI 11 Unmodified _VLFRNKKKVLI_ 0 0 0 L1MB8_dup14668|chr17:67909859-67910429:-|2.178749307182479|0.2389921695680479|3.19|151.0|19|3|sense L1MB8_dup14668|chr17:67909859-67910429:-|2.178749307182479|0.2389921695680479|3.19|151.0|19|3|sense L1MB8_dup14668|chr17:67909859-67910429:-|2.178749307182479|0.2389921695680479|3.19|151.0|19|3|sense MSMS UPN47_class_I_Rep_3 4 453.30596923828125 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 115.32 1 118.8 118.3 119.3 3.4802 0 0 0 0.38417 1 28352 28352 0.094841 0 1 49186 10949 30800 30814 56685 56685 0.23275331858394566 VLFRNKKKVLI 11 Unmodified _VLFRNKKKVLI_ 0 0 0 L1MB8_dup14668|chr17:67909859-67910429:-|2.178749307182479|0.2389921695680479|3.19|151.0|19|3|sense L1MB8_dup14668|chr17:67909859-67910429:-|2.178749307182479|0.2389921695680479|3.19|151.0|19|3|sense L1MB8_dup14668|chr17:67909859-67910429:-|2.178749307182479|0.2389921695680479|3.19|151.0|19|3|sense MSMS UPN47_class_I_Rep_3 4 453.3055114746094 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 116.1 1 119.56 119.06 120.06 3.462 0 0 0 0.38417 1 28562 28562 0.094841 0 1 49187 10949 30800 30814 56686 56686 0.23275331858394566 VLFTLPLKEP 10 Unmodified _VLFTLPLKEP_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 579.3547973632812 2 578.85245 1155.69035 0.63488 0.0003675 0.90929 0.00052634 1.5442 0.00089385 579.3545383913589 108.47 0.15733 112 111.9 112.06 3.5333 35 15 3 0 0 0 0.55148 1 26283 26283 5.2969 1.7004 1 3260900 + 49188 28444 30801 30815 56687 56687 0.11872919239408475 VLFTLPLKEP 10 Unmodified _VLFTLPLKEP_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 579.3547973632812 2 578.85245 1155.69035 0.63488 0.0003675 0.90929 0.00052634 1.5442 0.00089385 579.3545383913589 108.47 0.15733 112 111.9 112.06 3.5333 35 15 3 0 0 0 0.84575 1 26283 26283 5.2969 1.7004 1 3260900 + 49189 28444 30801 30815 56688 56688 0.11872919239408475 VLFTLPLKEP 10 Unmodified _VLFTLPLKEP_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 578.85245 1155.69035 0.484 0.00028017 0.44876 0.00025977 0.93277 0.00053993 578.8529979938843 108.46 0.11453 112.13 112.03 112.15 3.6751 0.073311 -0.00063273 NaN 5.2969 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1208800 + 49190 28444 30801 30815 0.11872919239408475 VLFTLPLKEPL 11 Unmodified _VLFTLPLKEPL_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 423.5975646972656 3 423.93208 1268.77441 0.11522 4.8846E-05 -0.11489 -4.8704E-05 0.00033579 1.4235E-07 423.93206543360014 98.335 0.10625 102.24 102.18 102.28 3.9022 21 14 2 0 0 0 22.551 1 23306 23306 4.4062 4.4062 1 1270800 + 49191 28444 30802 30816 56689 56689 0.15077450336320908 VLFTLPLKEPL 11 Unmodified _VLFTLPLKEPL_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|76|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 423.93208 1268.77441 0.082147 3.4825E-05 1.1744 0.00049787 1.2566 0.0005327 423.93233672837135 98.611 0.019623 102.38 102.37 102.39 3.7707 0.072303 0.0015624 NaN 4.4062 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 306390 + 49192 28444 30802 30816 0.15077450336320908 VLFTSVLK 8 Unmodified _VLFTSVLK_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS UPN47_class_I_Rep_1 2 453.7847900390625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 69.498 1 72.866 72.366 73.366 3.3678 0 0 0 0.40738 1 16843 16843 0.79363 0 1 49193 887 30803 30817 56690 56690 0.1020473394231658 VLFVIFWQ 8 Unmodified _VLFVIFWQ_ 0 0 0 REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|93|2|anti-sense REV__L1PB1_dup11468|chr15:99683732-99685553:-|2.397672718117244|0.1308697984314742|4.2|151.0|93|2|anti-sense MSMS UPN47_class_I_Rep_3 4 526.314453125 2 526.302396 1050.59024 NaN NaN NaN NaN NaN NaN NaN 72.398 1 75.626 75.126 76.126 3.2271 0 0 0 0.40364 1 17821 17821 5.7604 0.028577 1 + 49194 30326 30804 30818 56691 56691 0.06696726696259248 VLFVPRHWWHY 11 Unmodified _VLFVPRHWWHY_ 0 0 0 ENSG00000169087|ENST00000306103|HSPBAP1 ENSG00000169087|ENST00000306103|HSPBAP1 ENSG00000169087|ENST00000306103|HSPBAP1 MULTI-MSMS UPN48_class_I_Rep_2 6 514.2731323242188 3 513.938451 1538.79352 0.29985 0.00015411 0.62372 0.00032055 0.92358 0.00047466 514.2730185327275 37.306 0.82496 41.009 40.728 41.553 3.7021 197 88 3 0 0 0 0.68478 1 6317 6317 0.094841 0.094841 1 311390 49195 4403 30805 30819 56692 56692 0.04567844470602722 VLFWSKFR 8 Unmodified _VLFWSKFR_ 0 0 0 REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF MSMS UPN46_class_I_Rep_3 1 541.5589599609375 2 541.810919 1081.60729 NaN NaN NaN NaN NaN NaN NaN 39.904 1 39.904 39.404 40.404 0 0 0 0 0.40738 1 7706 7706 0.79363 0.10326 1 + 49196 22554 30806 30820 56693 56693 0.06974647302081394 VLFYPFFRW 9 Unmodified _VLFYPFFRW_ 0 0 0 REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|209|1|anti-sense REV__L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|209|1|anti-sense MSMS UPN47_class_I_Rep_2 3 637.8380737304688 2 637.839677 1273.6648 NaN NaN NaN NaN NaN NaN NaN 31 1 34.482 33.982 34.982 3.4821 0 0 0 0.40038 1 5190 5190 0.6015 0.14316 1 + 49197 24770 30807 30821 56694 56694 0.03891489507645929 VLFYPFLQ 8 Unmodified _VLFYPFLQ_ 0 0 0 REV__L1M3_dup2404|chr6:156138492-156139154:-|4.416718642226389|0.0144538178098205|8.26|148.0|38|2|anti-sense REV__L1M3_dup2404|chr6:156138492-156139154:-|4.416718642226389|0.0144538178098205|8.26|148.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 513.7864379882812 2 513.786579 1025.5586 NaN NaN NaN NaN NaN NaN NaN 57.44 1 60.732 60.232 61.232 3.2912 0 0 0 0.39408 1 13226 13226 10.183 0 1 + 49198 24290 30808 30822 56695 56695 0.04684733942326602 VLFYSGYVPL 10 Unmodified _VLFYSGYVPL_ 0 0 0 REV__L1M4_dup13412|chr10:110944395-110945618:-|1.8631382272625097|0.0479847700603116|5.28|151.0|59|2|anti-sense REV__L1M4_dup13412|chr10:110944395-110945618:-|1.8631382272625097|0.0479847700603116|5.28|151.0|59|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 579.3153686523438 2 579.3157 1156.61685 0.50708 0.00029376 -1.2369 -0.00071656 -0.72982 -0.0004228 579.3148893025025 110.26 0.17244 110.26 110.13 110.3 0 19 14 2 0 0 0 0.56281 1 27140 27140 1.8442 0.19162 1 317130 + 49199 24364 30809 30823 56696 56696 0.04480370796954958 VLGAHIFR 8 Unmodified _VLGAHIFR_ 0 0 0 L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|293|2|anti-sense;L1PA5_dup74|chr1:45961781-45965617:-|1.2279774679684723|0.0348609811569948|5.14|150.0|233|3|anti-sense;L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|337|3|anti-sense;L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|148|1|anti-sense;L1P3_dup2054|chrX:72437038-72440594:+|3.796873473798668|0.0583670315805057|6.02|151.0|140|2|anti-sense;L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|216|1|anti-sense;L1PA5_dup106|chr1:50904887-50911009:-|7.349801029516273|0.0650771704694023|6.82|151.0|347|3|anti-sense;L1PA3_dup5418|chr8:79982277-79988432:+|2.341766555090783|0.4616760721219765|2.34|151.0|353|3|anti-sense;L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|366|3|anti-sense L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|293|2|anti-sense L1PA4_dup279|chr1:92629667-92635797:-|1.4631804507036923|0.135531000527584|3.43|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 456.7726745605469 2 456.774337 911.534121 NaN NaN NaN NaN NaN NaN NaN 17.752 1 21.302 20.802 21.802 3.5504 0 0 0 0.40625 1 1373 1373 2.3027 0 1 49200 13530 30810 30824 56697 56697 0.07481518579459134 VLGGGIVFV 9 Unmodified _VLGGGIVFV_ 0 0 0 L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|93|3|anti-sense L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|93|3|anti-sense L1MDa_dup4569|chr10:42813034-42814572:-|1.7991594159844853|0.4958562818528517|1.86|151.0|93|3|anti-sense MSMS UPN46_class_I_Rep_3 1 430.7637939453125 2 430.765646 859.516739 NaN NaN NaN NaN NaN NaN NaN 108.28 1 108.28 107.78 108.78 0 0 0 0 0.381 1 26470 26470 5.2307 0 1 49201 12123 30811 30825 56698 56698 0.08136178253801063 VLGGRSRIL 9 Unmodified _VLGGRSRIL_ 0 0 0 ENST00000549620.5_1_12:50898776-50898842:+|nuORF ENST00000549620.5_1_12:50898776-50898842:+|nuORF ENST00000549620.5_1_12:50898776-50898842:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.3170166015625 2 485.811451 969.608348 0.13433 6.5257E-05 3.3074 0.0016068 3.4417 0.001672 485.8117207131178 64.339 0.59026 67.513 67.227 67.817 3.1741 72 41 2 0 0 0 0.33654 1 15431 15431 11.64 1.4569 1 423860 49202 7393 30812 30826 56699 56699 0.12232861670997863 VLGGRVNR 8 Unmodified _VLGGRVNR_ 0 0 0 HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 435.76715087890625 2 435.767043 869.519533 NaN NaN NaN NaN NaN NaN NaN 78.929 1 82.374 81.874 82.874 3.4456 0 0 0 0.40404 1 19641 19641 5.2307 0.47466 1 49203 7897 30813 30827 56700 56700 0.07955446431321889 VLGGRVNR 8 Unmodified _VLGGRVNR_ 0 0 0 HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 435.7669982910156 2 435.767043 869.519533 NaN NaN NaN NaN NaN NaN NaN 79.07 1 82.516 82.016 83.016 3.4456 0 0 0 0.40625 1 19684 19684 2.3027 0 1 49204 7897 30813 30827 56701 56701 0.07955446431321889 VLGGRVNR 8 Unmodified _VLGGRVNR_ 0 0 0 HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|47|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 435.7670593261719 2 435.767043 869.519533 -0.30855 -0.00013445 0.32409 0.00014123 0.015542 6.7728E-06 435.76710452042937 79.117 1.0392 82.473 82.097 83.136 3.3554 147 105 2 0 0 0 0.82752 2 19676 19676;19730 2.5775 0.27475 1 321430 49205 7897 30813 30827 56702;56703 56702 0.07955446431321889 VLGKAYSY 8 Unmodified _VLGKAYSY_ 0 0 0 nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;ENSG00000121775.18,TMEM39B,chr1,+,I4.1,32073873,32074950|23|3.36|4|intron;ENST00000476968.5_1_1:32560475-32568271:+|nuORF nc|ENSG00000121775|Q9GZU3-4|TMEM39B nc|ENSG00000121775|Q9GZU3-4|TMEM39B MSMS UPN46_class_I_Rep_3 1 450.743896484375 2 450.744911 899.475269 NaN NaN NaN NaN NaN NaN NaN 62.694 1 62.694 62.194 63.194 0 0 0 0 0.40604 1 14031 14031 2.5775 0 1 49206 2365 30814 30828 56704 56704 0.0215099749447063 VLGKERDRR 9 Unmodified _VLGKERDRR_ 0 0 0 REV__HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense REV__HERVH48-int_dup9|chr1:246637153-246639697:-|4.03298265931029|0.4941111713084381|3.03|151.0|76|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.832275390625 2 564.833446 1127.65234 -0.43852 -0.00024769 -1.0857 -0.00061323 -1.5242 -0.00086092 564.8324689254845 13.263 0.46615 16.637 16.535 17.001 3.3734 64 56 2 0 0 0 0.49187 1 281 281 1.4819 0 1 45436 + 49207 23708 30815 30829 56705 56705 0.09361846097317539 VLGKRREL 8 Unmodified _VLGKRREL_ 0 0 0 nc|ENSG00000127831|P09327-2|VIL1;ENSG00000127831|ENST00000248444|VIL1 nc|ENSG00000127831|P09327-2|VIL1 nc|ENSG00000127831|P09327-2|VIL1 MSMS UPN47_class_I_Rep_1 2 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 63.229 1 66.588 66.088 67.088 3.3595 0 0 0 0.40643 1 14947 14947 2.0598 0 1 49208 2574 30816 30830 56706 56706 0.12232861670997863 VLGLFELVG 9 Unmodified _VLGLFELVG_ 0 0 0 L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|198|2|anti-sense L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|198|2|anti-sense L1PA8_dup2167|chr4:129029684-129033520:+|2.786522677451888|0.105352520463136|4.73|151.0|198|2|anti-sense MSMS UPN47_class_I_Rep_3 4 473.7828063964844 2 473.784036 945.553519 NaN NaN NaN NaN NaN NaN NaN 19.438 1 22.79 22.29 23.29 3.3514 0 0 0 0.38299 1 1817 1817 4.756 1.8668 1 49209 14929 30817 30831 56707 56707 0.07856430079709753 VLGLYHLKW 9 Unmodified _VLGLYHLKW_ 0 0 0 L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.8330688476562 2 564.831852 1127.64915 -0.12843 -7.2539E-05 1.7195 0.0009712 1.591 0.00089866 564.8326577777142 13.156 0.29707 16.612 16.484 16.781 3.457 38 30 2 0 0 0 0.48846 1 267 267 1.8442 0.19162 1 53648 49210 9386 30818 30832 56708 56708 0.0904320299059691 VLGLYHLKW 9 Unmodified _VLGLYHLKW_ 0 0 0 L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 564.831852 1127.64915 -0.12843 -7.2539E-05 1.7195 0.0009712 1.591 0.00089866 564.8326577777142 13.156 0.29707 16.612 16.484 16.781 3.457 -0.004013 0.00017068 NaN 1.8442 38 30 2 NaN NaN NaN NaN 0 NaN NaN 0 53648 49211 9386 30818 30832 0.0904320299059691 VLGLYHLKW 9 Unmodified _VLGLYHLKW_ 0 0 0 L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense L1MA2_dup4220|chrX:81289870-81290875:+|5.00985513119169|0.35026687390302|3.84|151.0|64|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 564.831852 1127.64915 -0.43852 -0.00024769 1.7363 0.00098072 1.2978 0.00073303 564.8324689254845 13.263 0.46615 16.637 16.535 17.001 3.3734 0.020405 0.00018972 NaN 1.8442 64 56 2 NaN NaN NaN NaN 0 NaN NaN 0 45436 49212 9386 30818 30832 0.0904320299059691 VLGMRPASSLT 11 Unmodified _VLGMRPASSLT_ 0 0 0 ENST00000555507.5_1_14:94421499-94421592:-|nuORF ENST00000555507.5_1_14:94421499-94421592:-|nuORF ENST00000555507.5_1_14:94421499-94421592:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 566.3143310546875 2 566.313166 1130.61178 0.23185 0.0001313 -0.33194 -0.00018798 -0.10009 -5.668E-05 566.3129823128006 50.049 0.57082 53.677 53.417 53.988 3.6285 54 30 3 0 0 0 0.67264 1 11029 11029 1.1933 0.50296 1 114670 49213 7429 30819 30833 56709 56709 0.05169743662668225 VLGNGGLRFV 10 Unmodified _VLGNGGLRFV_ 0 0 0 REV__HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|140|3|anti-sense REV__HERVIP10F-int_dup136|chrX:45004017-45006327:-|1.72873556779335|0.0375856083293563|5.52|151.0|140|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.3150634765625 2 516.303458 1030.59236 NaN NaN NaN NaN NaN NaN NaN 107.55 1 111.08 110.58 111.58 3.5345 0 0 0 0.53105 1 26026 26026 6.2058 0 1 + 49214 23740 30820 30834 56710 56710 0.07829155434069435 VLGPDWKW 8 Unmodified _VLGPDWKW_ 0 0 0 REV__ENST00000428206.5_1_7:72721469-72721618:-|nuORF REV__ENST00000428206.5_1_7:72721469-72721618:-|nuORF MSMS UPN48_class_I_Rep_1 5 500.749267578125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 114.09 1 117.72 117.22 118.22 3.6301 0 0 0 0.40738 1 27731 27731 0.79363 0 1 + 49215 22277 30821 30835 56711 56711 0.018023926226987896 VLGQVVFV 8 Unmodified _VLGQVVFV_ 0 0 0 REV__L1MB5_dup314|chr1:90958261-90959816:+|1.3052597141681677|0.0171384575976879|6.25|151.0|75|1|anti-sense REV__L1MB5_dup314|chr1:90958261-90959816:+|1.3052597141681677|0.0171384575976879|6.25|151.0|75|1|anti-sense MSMS UPN46_class_I_Rep_3 1 430.7619323730469 2 430.765646 859.516739 NaN NaN NaN NaN NaN NaN NaN 108.32 1 108.32 107.82 108.82 0 0 0 0 0.39624 1 26480 26480 9.3474 0 1 + 49216 26054 30822 30836 56712 56712 0.08136178253812432 VLGSSSLTTPV 11 Unmodified _VLGSSSLTTPV_ 0 0 0 REV__PRIMA4-int_dup287|chr12:31304978-31305696:-|1.4234875738508963|0.0422906865177613|5.07|151.0|18|3|sense REV__PRIMA4-int_dup287|chr12:31304978-31305696:-|1.4234875738508963|0.0422906865177613|5.07|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 530.7987060546875 2 530.797872 1059.58119 NaN NaN NaN NaN NaN NaN NaN 55.37 1 58.548 58.048 59.048 3.1779 0 0 0 0.38417 1 12648 12648 2.7352 0.89096 1 + 49217 32162 30823 30837 56713 56713 0.05378288549286481 VLGTLHKVPNK 11 Unmodified _VLGTLHKVPNK_ 0 0 0 REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|83|3|sense REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|83|3|sense MSMS UPN46_class_I_Rep_3 1 603.37109375 2 603.371872 1204.72919 NaN NaN NaN NaN NaN NaN NaN 102.13 1 102.13 101.63 102.63 0 0 0 0 0.38417 1 24921 24921 1.1933 0.735 1 + 49218 17274 30824 30838 56714 56714 0.13501644593793571 VLGWFSQSV 9 Unmodified _VLGWFSQSV_ 0 0 0 nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B MULTI-SECPEP UPN47_class_I_Rep_2 3 512.2954711914062 2 511.768917 1021.52328 0.095847 4.9051E-05 0.49712 0.00025441 0.59296 0.00030346 511.76900076168204 63.401 0.24311 66.657 66.575 66.818 3.2558 25 17 2 0 0 0 0.12383 1 15056 15056 3.2813 0 1 37885 49219 3578 30825 30839 56715 56715 0.013380714145228012 VLHDEFESI 9 Unmodified _VLHDEFESI_ 0 0 0 REV__L1P3_dup690|chr4:13444850-13446816:-|2.002008312508897|0.057112626010644|5.13|151.0|13|1|sense REV__L1P3_dup690|chr4:13444850-13446816:-|2.002008312508897|0.057112626010644|5.13|151.0|13|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 544.7674560546875 2 544.766571 1087.51859 0.57276 0.00031202 -0.011463 -6.2445E-06 0.5613 0.00030578 544.7665708883945 59.786 0.49785 63.266 62.97 63.468 3.4801 65 38 2 0 0 0 0.11959 1 13225 13225 7.9102 1.5561 1 198250 + 49220 28900 30826 30840 56716 56716 -0.021668575189096373 VLHECLFAPF 10 Unmodified _VLHECLFAPF_ 0 0 0 REV__L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|274|2|anti-sense REV__L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|274|2|anti-sense MSMS UPN48_class_I_Rep_3 7 588.2952270507812 2 588.299527 1174.5845 NaN NaN NaN NaN NaN NaN NaN 42.674 1 46.316 45.816 46.816 3.6415 0 0 0 0.53105 1 7847 7847 6.7232 1.4263 1 + 49221 29889 30827 30841 56717 56717 0.004192601222939629 VLHEGVLHIP 10 Unmodified _VLHEGVLHIP_ 0 0 0 L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|272|2|anti-sense L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|272|2|anti-sense L1PA5_dup5330|chr7:138531293-138537368:-|1.5724622666511354|0.0514863989320863|4.93|151.0|272|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.323486328125 2 557.324391 1112.63423 NaN NaN NaN NaN NaN NaN NaN 61.726 1 61.726 61.226 62.226 0 0 0 0 0.53105 1 13755 13755 1.8442 1.0506 1 49222 14485 30828 30842 56718 56718 0.08241711122627748 VLHGAALRFL 10 Unmodified _VLHGAALRFL_ 0 0 0 REV__ENST00000419457.1_1_13:29297857-29298106:-|nuORF REV__ENST00000419457.1_1_13:29297857-29298106:-|nuORF MSMS UPN46_class_I_Rep_3 1 548.8341064453125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 90.962 1 90.962 90.462 91.462 0 0 0 0 0.53105 1 21949 21949 0.45834 0 1 + 49223 22238 30829 30843 56719 56719 0.11129721222141598 VLHHCLRL 8 Unmodified _VLHHCLRL_ 0 0 0 REV__L1MC3_dup83|chr1:28935935-28937388:-|2.163346246131485|0.014683942820121|7.2|151.0|19|1|sense REV__L1MC3_dup83|chr1:28935935-28937388:-|2.163346246131485|0.014683942820121|7.2|151.0|19|1|sense MSMS UPN47_class_I_Rep_3 4 495.83294677734375 2 495.786921 989.55929 NaN NaN NaN NaN NaN NaN NaN 28.842 1 32.176 31.676 32.676 3.3337 0 0 0 0.40738 1 4579 4579 0.79363 0 1 + 49224 26786 30830 30844 56720 56720 0.06409250110380071 VLHHQLIL 8 Unmodified _VLHHQLIL_ 0 0 0 REV__HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|60|3|sense REV__HERVK-int_dup107|chr7:141752118-141755274:-|1.1271071408887308|0.1486100098843216|2.92|149.0|60|3|sense MSMS UPN47_class_I_Rep_2 3 486.8027648925781 2 486.803094 971.591636 NaN NaN NaN NaN NaN NaN NaN 66.743 1 70.002 69.502 70.502 3.2588 0 0 0 0.40604 1 16053 16053 2.5775 0 1 + 49225 23784 30831 30845 56721 56721 0.10470360785029698 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 547.3324584960938 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 77.988 1 81.331 80.831 81.831 3.3428 0 0 0 0.4007 1 19365 19365 0.52476 0 1 49226 12128 30832 30846 56722 56722 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 547.345458984375 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 86.703 1 90.144 89.644 90.644 3.4407 0 0 0 0.4007 1 21562 21562 0.52476 0 1 49227 12128 30832 30846 56723 56723 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 547.3320922851562 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 95.599 1 99.074 98.574 99.574 3.4753 0 0 0 0.4007 1 23525 23525 0.52476 0 1 49228 12128 30832 30846 56724 56724 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 547.3328247070312 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 87.127 1 90.507 90.007 91.007 3.3801 0 0 0 0.4007 1 21833 21833 0.52476 0 1 49229 12128 30832 30846 56725 56725 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 547.3449096679688 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 93.377 1 96.782 96.282 97.282 3.4052 0 0 0 0.4007 1 23281 23281 0.52476 0 1 49230 12128 30832 30846 56726 56726 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 547.344970703125 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 93.561 1 96.966 96.466 97.466 3.4052 0 0 0 0.4007 1 23318 23318 0.52476 0 1 49231 12128 30832 30846 56727 56727 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 547.345458984375 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 97.77 1 101.19 100.69 101.69 3.4216 0 0 0 0.4007 1 24225 24225 0.52476 0 1 49232 12128 30832 30846 56728 56728 0.13413106250845885 VLHKKLNKN 9 Unmodified _VLHKKLNKN_ 0 0 0 L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense L1MDa_dup4900|chr11:76496523-76498607:-|1.3264669316251745|0.0293431043966077|5.5|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 547.3457641601562 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.96 114.46 115.46 3.6666 0 0 0 0.4007 1 26473 26473 0.52476 0 1 49233 12128 30832 30846 56729 56729 0.13413106250845885 VLHKLKAER 9 Unmodified _VLHKLKAER_ 0 0 0 ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF MSMS UPN47_class_I_Rep_2 3 547.3340454101562 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 89.783 1 93.24 92.74 93.74 3.4571 0 0 0 0.3967 1 22299 22299 1.4819 0 1 49234 7196 30833 30847 56730 56730 0.13413106250845885 VLHKLKAER 9 Unmodified _VLHKLKAER_ 0 0 0 ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.3327026367188 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 88.974 1 92.367 91.867 92.867 3.3931 0 0 0 0.3967 1 22316 22316 1.4819 0 1 49235 7196 30833 30847 56731 56731 0.13413106250845885 VLHKLKAER 9 Unmodified _VLHKLKAER_ 0 0 0 ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF MSMS UPN47_class_I_Rep_3 4 547.3450317382812 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 94.384 1 97.791 97.291 98.291 3.4068 0 0 0 0.3967 1 23495 23495 1.4819 0 1 49236 7196 30833 30847 56732 56732 0.13413106250845885 VLHKLKAER 9 Unmodified _VLHKLKAER_ 0 0 0 ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF ENST00000513637.1_1_5:43496220-43496412:-|nuORF MSMS UPN48_class_I_Rep_2 6 547.345947265625 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 97.111 1 100.89 100.39 101.39 3.779 0 0 0 0.3967 1 23078 23078 1.4819 0 1 49237 7196 30833 30847 56733 56733 0.13413106250845885 VLHLETIKLT 10 Unmodified _VLHLETIKLT_ 0 0 0 L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|79|2|sense L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|79|2|sense L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|79|2|sense MSMS UPN47_class_I_Rep_1 2 583.8583374023438 2 583.860806 1165.70706 NaN NaN NaN NaN NaN NaN NaN 89.813 1 93.487 92.987 93.987 3.6738 0 0 0 0.53105 1 22456 22456 1.3295 0 1 49238 8749 30834 30848 56734 56734 0.1308342012534922 VLHLFFLHMV 10 Unmodified _VLHLFFLHMV_ 0 0 0 REV__MLT1J_dup498|chr1:86364520-86364895:+|1.1556692680981144|0.2313353955200088|2.32|151.0|3|1|sense REV__MLT1J_dup498|chr1:86364520-86364895:+|1.1556692680981144|0.2313353955200088|2.32|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 628.3547973632812 2 628.354637 1254.69472 NaN NaN NaN NaN NaN NaN NaN 60.3 1 60.3 59.8 60.8 0 0 0 0 0.53105 1 13370 13370 1.8442 0.19162 1 + 49239 31779 30835 30849 56735 56735 0.07756105181306339 VLHLVIVVY 9 Unmodified _VLHLVIVVY_ 0 0 0 L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|154|3|anti-sense L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|154|3|anti-sense L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|154|3|anti-sense MSMS UPN47_class_I_Rep_1 2 527.8377685546875 2 527.836603 1053.65865 NaN NaN NaN NaN NaN NaN NaN 92.137 1 95.858 95.358 96.358 3.7209 0 0 0 0.40038 1 22971 22971 0.6015 0.076735 1 49240 10104 30836 30850 56736 56736 0.13396971276142722 VLHNEFIVL 9 Unmodified _VLHNEFIVL_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|251|1|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|251|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.3134155273438 2 542.313492 1082.61243 0.35907 0.00019473 0.49459 0.00026822 0.85365 0.00046295 542.3138105758524 64.333 0.61423 67.589 67.306 67.921 3.2556 64 46 2 0 0 0 0.42249 2 15301 15301;15333 6.7232 0 1 155690 + 49241 23781 30837 30851 56737;56738 56737 0.07442906374035374 VLHNEFIVL 9 Unmodified _VLHNEFIVL_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|251|1|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|251|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.3140258789062 2 542.313492 1082.61243 0.41553 0.00022535 0.41052 0.00022263 0.82605 0.00044798 542.3136333269168 64.334 0.57506 67.508 67.195 67.77 3.1741 74 39 3 0 0 0 0.42249 1 15459 15459 6.7232 0 1 204980 + 49242 23781 30837 30851 56739 56739 0.07442906374035374 VLHNSINKMKE 11 Unmodified _VLHNSINKMKE_ 0 0 0 REV__nc|ENSG00000136273|O60921-2|HUS1 REV__nc|ENSG00000136273|O60921-2|HUS1 MULTI-MSMS UPN47_class_I_Rep_1 2 438.5742492675781 3 438.239578 1311.69691 0.0051945 2.2764E-06 0.42575 0.00018658 0.43095 0.00018886 438.2397089942336 65.751 1.0145 69.108 68.642 69.656 3.3576 139 61 3 0 0 0 0.62008 2 15603 15603;15775 4.7159 1.6437 1 300760 + 49243 19181 30838 30852 56740;56741 56740 0.053524891284496334 VLHNSINKMKE 11 Unmodified _VLHNSINKMKE_ 0 0 0 REV__nc|ENSG00000136273|O60921-2|HUS1 REV__nc|ENSG00000136273|O60921-2|HUS1 MULTI-MSMS UPN48_class_I_Rep_2 6 438.5739440917969 3 438.239578 1311.69691 0.13886 6.0856E-05 0.32363 0.00014183 0.4625 0.00020269 438.23966791554375 65.981 0.89406 69.468 69.017 69.911 3.4866 163 63 3 0 0 0 0.62008 1 15173 15173 4.7159 1.6437 1 763110 + 49244 19181 30838 30852 56742 56742 0.053524891284496334 VLHRLPRRAAG 11 Unmodified _VLHRLPRRAAG_ 0 0 0 ENST00000221138.8_1_8:30669888-30670284:-|nuORF ENST00000221138.8_1_8:30669888-30670284:-|nuORF ENST00000221138.8_1_8:30669888-30670284:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 623.8895263671875 2 623.38618 1244.75781 0.67207 0.00041896 1.5692 0.00097821 2.2413 0.0013972 623.386704037616 109.74 0.32144 109.74 109.56 109.88 0 44 27 2 0 0 0 0.57992 1 26965 26965 5.7319 0.43497 1 1474500 49245 5870 30839 30853 56743 56743 0.14521807013602483 VLHRLPRRAAG 11 Unmodified _VLHRLPRRAAG_ 0 0 0 ENST00000221138.8_1_8:30669888-30670284:-|nuORF ENST00000221138.8_1_8:30669888-30670284:-|nuORF ENST00000221138.8_1_8:30669888-30670284:-|nuORF MSMS UPN48_class_I_Rep_3 7 623.3865966796875 2 623.38618 1244.75781 NaN NaN NaN NaN NaN NaN NaN 109.38 1 113.06 112.56 113.56 3.6751 0 0 0 0.38417 1 25972 25972 5.7319 0 1 49246 5870 30839 30853 56744 56744 0.14521807013602483 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN46_class_I_Rep_3 1 489.8061218261719 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 66.993 1 66.993 66.493 67.493 0 0 0 0 0.40746 1 15230 15230 0.69038 0 1 + 49247 21639 30840 30854 56745 56745 0.10981932825166041 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN47_class_I_Rep_1 2 489.806396484375 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 60.587 1 63.969 63.469 64.469 3.3815 0 0 0 0.40746 1 14149 14149 0.69038 0 1 + 49248 21639 30840 30854 56746 56746 0.10981932825166041 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN47_class_I_Rep_1 2 489.806884765625 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 65.82 1 69.178 68.678 69.678 3.3576 0 0 0 0.40746 1 15725 15725 0.69038 0 1 + 49249 21639 30840 30854 56747 56747 0.10981932825166041 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN47_class_I_Rep_1 2 489.8059387207031 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 69.104 1 72.471 71.971 72.971 3.3678 0 0 0 0.40746 1 16725 16725 0.69038 0 1 + 49250 21639 30840 30854 56748 56748 0.10981932825166041 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN47_class_I_Rep_1 2 489.806396484375 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 70.187 1 73.558 73.058 74.058 3.3713 0 0 0 0.40746 1 17045 17045 0.69038 0 1 + 49251 21639 30840 30854 56749 56749 0.10981932825166041 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN47_class_I_Rep_2 3 489.8066101074219 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 61.436 1 64.696 64.196 65.196 3.2594 0 0 0 0.40746 1 14442 14442 0.69038 0 1 + 49252 21639 30840 30854 56750 56750 0.10981932825166041 VLHRRRAA 8 Unmodified _VLHRRRAA_ 0 0 0 REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF MSMS UPN47_class_I_Rep_2 3 489.806396484375 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 65.929 1 69.187 68.687 69.687 3.2588 0 0 0 0.40746 1 15807 15807 0.69038 0 1 + 49253 21639 30840 30854 56751 56751 0.10981932825166041 VLHSFLWPNSI 11 Unmodified _VLHSFLWPNSI_ 0 0 0 L1MB7_dup18262|chr15:67110770-67111779:-|1.141937494162668|0.0285530357580461|5.32|151.0|56|2|anti-sense L1MB7_dup18262|chr15:67110770-67111779:-|1.141937494162668|0.0285530357580461|5.32|151.0|56|2|anti-sense L1MB7_dup18262|chr15:67110770-67111779:-|1.141937494162668|0.0285530357580461|5.32|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 438.5736999511719 3 438.239796 1311.69756 -0.39381 -0.00017258 0.24298 0.00010649 -0.15083 -6.6099E-05 438.23988987021175 65.994 0.90964 69.253 69.145 70.055 3.2588 101 60 2 0 0 0 0.65186 1 15934 15934 3.0723 0 1 320640 49254 10759 30841 30855 56752 56752 0.054176518398662665 VLHSNRRFVKG 11 Unmodified _VLHSNRRFVKG_ 0 0 0 REV__ENSG00000198633|ENST00000433050|ZNF534 REV__ENSG00000198633|ENST00000433050|ZNF534 MULTI-MSMS UPN47_class_I_Rep_3 4 438.2576599121094 3 438.258072 1311.75239 -1.0717 -0.00046967 -0.0098313 -4.3087E-06 -1.0815 -0.00047398 438.25803340781874 25.233 0.65803 28.584 28.259 28.917 3.3509 76 51 2 0 0 0 0.62008 1 3477 3477 4.7159 0 1 108400 + 49255 21136 30842 30856 56753 56753 0.1089808343108416 VLHVKLTES 9 Unmodified _VLHVKLTES_ 0 0 0 ENST00000413990.1_1_1:158146977-158147493:-|nuORF ENST00000413990.1_1_1:158146977-158147493:-|nuORF ENST00000413990.1_1_1:158146977-158147493:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 513.3023681640625 2 513.303124 1024.5917 -0.32389 -0.00016625 -0.037927 -1.9468E-05 -0.36182 -0.00018572 513.3031299355578 32.006 0.70763 35.305 35.011 35.719 3.2991 105 53 3 0 0 0 0.47197 1 5627 5627 3.5965 0 1 89779 49256 6638 30843 30857 56754 56754 0.08038315994349432 VLHVKTESL 9 Unmodified _VLHVKTESL_ 0 0 0 ENST00000495579.5_1_6:32088425-32095984:-|nuORF;nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B ENST00000495579.5_1_6:32088425-32095984:-|nuORF ENST00000495579.5_1_6:32088425-32095984:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 512.76904296875 2 513.303124 1024.5917 -0.289 -0.00014834 -0.23381 -0.00012002 -0.52281 -0.00026836 513.3031095391124 31.758 0.71302 35.227 34.903 35.616 3.4691 107 55 3 0 0 0 0.12026 1 5414 5414 8.1555 8.1555 1 128330 49257 5599 30844 30858 56755 56755 0.0803831599437217 VLHVRAPGV 9 Unmodified _VLHVRAPGV_ 0 0 0 REV__ENST00000414034.7_2_17:40341723-40342334:-|nuORF REV__ENST00000414034.7_2_17:40341723-40342334:-|nuORF MSMS UPN46_class_I_Rep_3 1 474.28228759765625 2 474.292894 946.571235 NaN NaN NaN NaN NaN NaN NaN 34.549 1 34.549 34.049 35.049 0 0 0 0 0.39326 1 6182 6182 2.3027 0 1 + 49258 20245 30845 30859 56756 56756 0.09581190125220473 VLHVTSIVGT 10 Unmodified _VLHVTSIVGT_ 0 0 0 MER52A_dup205|chr3:17479757-17481470:+|1.166756520102404|0.0380781188654936|4.94|150.0|45|1|anti-sense MER52A_dup205|chr3:17479757-17481470:+|1.166756520102404|0.0380781188654936|4.94|150.0|45|1|anti-sense MER52A_dup205|chr3:17479757-17481470:+|1.166756520102404|0.0380781188654936|4.94|150.0|45|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 512.76904296875 2 513.303124 1024.5917 -0.18878 -9.6899E-05 -0.276 -0.00014167 -0.46478 -0.00023857 513.3031529241684 31.465 0.61161 35.194 34.944 35.555 3.7293 76 42 2 0 0 0 0.84575 1 5265 5265 6.2058 0 1 113330 49259 16092 30846 30860 56757 56757 0.0803831599437217 VLHWKLEQ 8 Unmodified _VLHWKLEQ_ 0 0 0 ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|1|intron;ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|3|intron;ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|4|intron;nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|1|intron ENSG00000164823.11,OSGIN2,chr8,+,I5.1,89914747,89921079|44|5.81|1|intron MSMS UPN48_class_I_Rep_3 7 527.286376953125 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 21.303 1 24.97 24.47 25.47 3.6667 0 0 0 0.40738 1 1977 1977 0.79363 0 1 49260 4134 30847 30861 56758 56758 0.05773753059793307 VLHYPETLY 9 Unmodified _VLHYPETLY_ 0 0 0 L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|307|2|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|307|2|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|307|2|anti-sense MSMS UPN47_class_I_Rep_2 3 567.7583618164062 2 567.795132 1133.57571 NaN NaN NaN NaN NaN NaN NaN 67.746 1 71.009 70.509 71.509 3.2636 0 0 0 0.38299 1 16355 16355 4.756 0 1 49261 12020 30848 30862 56759 56759 0.01426609757481856 VLIALIFLF 9 Unmodified _VLIALIFLF_ 0 0 0 REV__L1ME3A_dup10206|chr11:9232091-9233079:+|1.856273706116625|0.0066430856181061|8.13|151.0|43|1|anti-sense REV__L1ME3A_dup10206|chr11:9232091-9233079:+|1.856273706116625|0.0066430856181061|8.13|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 524.8273315429688 2 524.843897 1047.67324 NaN NaN NaN NaN NaN NaN NaN 89.998 1 93.396 92.896 93.896 3.3976 0 0 0 0.39326 1 22560 22560 2.3027 0 1 + 49262 27977 30849 30863 56760 56760 0.1513104342425322 VLICLSKVN 9 Unmodified _VLICLSKVN_ 0 0 0 MamRep137_dup1561|chr11:73680669-73681102:-|2.3442217550058038|0.3155448645734638|2.89|151.0|8|2|sense MamRep137_dup1561|chr11:73680669-73681102:-|2.3442217550058038|0.3155448645734638|2.89|151.0|8|2|sense MamRep137_dup1561|chr11:73680669-73681102:-|2.3442217550058038|0.3155448645734638|2.89|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 494.7947998046875 2 494.79662 987.578688 NaN NaN NaN NaN NaN NaN NaN 37.149 1 40.818 40.318 41.318 3.6692 0 0 0 0.39518 1 7017 7017 1.8442 0 1 49263 15740 30850 30864 56761 56761 0.08440161610633368 VLICLSKVN 9 Unmodified _VLICLSKVN_ 0 0 0 MamRep137_dup1561|chr11:73680669-73681102:-|2.3442217550058038|0.3155448645734638|2.89|151.0|8|2|sense MamRep137_dup1561|chr11:73680669-73681102:-|2.3442217550058038|0.3155448645734638|2.89|151.0|8|2|sense MamRep137_dup1561|chr11:73680669-73681102:-|2.3442217550058038|0.3155448645734638|2.89|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 494.7948913574219 2 494.79662 987.578688 NaN NaN NaN NaN NaN NaN NaN 38.17 1 41.412 40.912 41.912 3.2414 0 0 0 0.39518 1 7400 7400 1.8442 0 1 49264 15740 30850 30864 56762 56762 0.08440161610633368 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN46_class_I_Rep_3 1 560.3115234375 2 560.31148 1118.60841 0.38524 0.00021585 -0.12993 -7.2802E-05 0.25531 0.00014305 560.3113638048495 49.675 0.70998 49.675 49.379 50.089 0 186 77 3 0 0 0 0.0055879 6 10475 10375;10408;10441;10475;10512;10550 133.05 70.479 1 1204600 49265 1234 30851 30865 56763;56764;56765;56766;56767;56768 56766 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN47_class_I_Rep_1 2 560.3113403320312 2 560.31148 1118.60841 0.10679 5.9833E-05 -0.16707 -9.3612E-05 -0.060287 -3.3779E-05 560.3113333242675 44.978 0.67431 48.678 48.451 49.125 3.6999 99 41 3 0 0 0 0.079935 1 9387 9387 38.615 22.466 1 218300 49266 1234 30851 30865 56769 56769 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN47_class_I_Rep_2 3 560.3116455078125 2 560.31148 1118.60841 0.22434 0.0001257 -0.16717 -9.3665E-05 0.057173 3.2035E-05 560.3113251231633 45.365 0.71091 48.718 48.426 49.137 3.3535 90 41 3 0 0 0 0.022868 1 9537 9537 61.602 33.973 1 202140 49267 1234 30851 30865 56770 56770 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN47_class_I_Rep_3 4 560.311279296875 2 560.31148 1118.60841 0.24395 0.00013669 -0.40202 -0.00022526 -0.15807 -8.857E-05 560.3111521797487 45.451 0.65854 48.695 48.417 49.075 3.2441 96 40 3 0 0 0 0.053261 1 9617 9617 47.594 19.966 1 169310 49268 1234 30851 30865 56771 56771 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 560.31148 1118.60841 0.40494 0.00022689 0.95112 0.00053292 1.3561 0.00075981 560.8131333082473 46.027 0.16449 49.785 49.712 49.877 3.7579 0.055156 0.0011965 NaN 133.05 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 103610 49269 1234 30851 30865 0.05384816880314247 VLIEDFIKY 9 Unmodified _VLIEDFIKY_ 0 0 0 REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A REV__nc|ENSG00000077097|Q02880-2|TOP2B MSMS UPN47_class_I_Rep_1 2 570.3203735351562 2 570.320983 1138.62741 NaN NaN NaN NaN NaN NaN NaN 63.751 1 67.106 66.606 67.606 3.3557 0 0 0 0.38784 1 15104 15104 3.5965 0 1 + 49270 17875;31980 30852 30866 56772 56772 0.06364353451363058 VLIEDFIKY 9 Unmodified _VLIEDFIKY_ 0 0 0 REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A REV__nc|ENSG00000077097|Q02880-2|TOP2B MSMS UPN47_class_I_Rep_2 3 570.3209838867188 2 570.320983 1138.62741 NaN NaN NaN NaN NaN NaN NaN 63.99 1 67.245 66.745 67.745 3.2556 0 0 0 0.089203 1 15214 15214 26.884 1.4843 1 + 49271 17875;31980 30852 30866 56773 56773 0.06364353451363058 VLIEDFIKY 9 Unmodified _VLIEDFIKY_ 0 0 0 REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A REV__nc|ENSG00000077097|Q02880-2|TOP2B MSMS UPN47_class_I_Rep_2 3 570.3206176757812 2 570.320983 1138.62741 NaN NaN NaN NaN NaN NaN NaN 64.383 1 67.639 67.139 68.139 3.2556 0 0 0 0.28335 1 15334 15334 11.64 2.2572 1 + 49272 17875;31980 30852 30866 56774 56774 0.06364353451363058 VLIEDFIKY 9 Unmodified _VLIEDFIKY_ 0 0 0 REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A REV__nc|ENSG00000077097|Q02880-2|TOP2B MULTI-MSMS UPN47_class_I_Rep_3 4 570.3216552734375 2 570.320983 1138.62741 0.4311 0.00024586 -1.4001 -0.00079853 -0.96904 -0.00055267 570.3196634793909 64.044 0.49722 67.218 66.928 67.426 3.1741 31 25 3 0 0 0 0.18929 2 15285 15279;15285 21.747 3.6003 1 192160 + 49273 17875;31980 30852 30866 56775;56776 56776 0.06364353451363058 VLIESCYKQ 9 Unmodified _VLIESCYKQ_ 0 0 0 REV__ENSG00000138075|ENST00000405322|ABCG5 REV__ENSG00000138075|ENST00000405322|ABCG5 MULTI-MSMS UPN48_class_I_Rep_2 6 541.781005859375 2 541.781167 1081.54778 0.38144 0.00020666 0.88028 0.00047692 1.2617 0.00068357 541.781478723347 47.58 0.66078 51.316 51.049 51.709 3.7361 80 51 2 0 0 0 0.47197 1 9460 9460 3.5965 0.31518 1 154250 + 49274 19262 30853 30867 56777 56777 0.010269635057284177 VLIETLVTL 9 Unmodified _VLIETLVTL_ 0 0 0 ENST00000606061.1_1_20:32881868-32891076:-|nuORF;ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY ENST00000606061.1_1_20:32881868-32891076:-|nuORF ENST00000606061.1_1_20:32881868-32891076:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 500.81805419921875 2 500.818076 999.621598 0.26372 0.00013208 0.12877 6.4492E-05 0.3925 0.00019657 500.8180583729524 87.339 0.75793 90.977 90.741 91.499 3.6372 153 87 3 0 0 0 0.0059326 6 21852 21786;21819;21852;21884;21917;21953 128.37 39.462 1 496370 49275 1573 30854 30868 56778;56779;56780;56781;56782;56783 56780 0.12177254939717841 VLIETLVTL 9 Unmodified _VLIETLVTL_ 0 0 0 ENST00000606061.1_1_20:32881868-32891076:-|nuORF;ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY ENST00000606061.1_1_20:32881868-32891076:-|nuORF ENST00000606061.1_1_20:32881868-32891076:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 500.818115234375 2 500.818076 999.621598 0.34179 0.00017117 -0.082078 -4.1106E-05 0.25971 0.00013007 500.817926673906 87.55 0.75286 90.997 90.654 91.407 3.4471 205 93 3 0 0 0 0.0070613 5 21756 21697;21727;21756;21786;21820 115.69 34.927 1 301180 49276 1573 30854 30868 56784;56785;56786;56787;56788 56786 0.12177254939717841 VLIETLVTL 9 Unmodified _VLIETLVTL_ 0 0 0 ENST00000606061.1_1_20:32881868-32891076:-|nuORF;ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY ENST00000606061.1_1_20:32881868-32891076:-|nuORF ENST00000606061.1_1_20:32881868-32891076:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 500.8182373046875 2 500.818076 999.621598 0.27942 0.00013994 -0.094907 -4.7531E-05 0.18452 9.2409E-05 500.8179543082058 87.732 0.71949 91.119 90.7 91.419 3.3873 161 83 3 0 0 0 0.0067818 5 21966 21894;21932;21966;22003;22039 85.272 27.801 1 334220 49277 1573 30854 30868 56789;56790;56791;56792;56793 56791 0.12177254939717841 VLIFAFTML 9 Unmodified _VLIFAFTML_ 0 0 0 REV__L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|64|3|anti-sense REV__L1MD_dup7794|chr17:29445401-29446337:-|1.1465391715107949|0.005928992051988|7.6|151.0|64|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 527.3028564453125 2 527.803914 1053.59328 0.40521 0.00021387 -0.58172 -0.00030703 -0.17651 -9.3161E-05 527.8036840946755 85.248 0.069733 88.953 88.924 88.993 3.7058 10 8 2 0 0 0 0.12444 1 20280 20280 0.52476 0 1 80761 + 49278 27286 30855 30869 56794 56794 0.06862233758761249 VLIGETVVGI 10 Unmodified _VLIGETVVGI_ 0 0 0 REV__L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|208|2|anti-sense REV__L1PA8A_dup613|chr4:67811157-67815725:+|2.3074203783462064|0.0537849714355355|5.42|151.0|208|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.30743408203125 2 500.307875 998.601197 NaN NaN NaN NaN NaN NaN NaN 61.328 1 64.71 64.21 65.21 3.3815 0 0 0 0.53105 1 14374 14374 6.7232 0 1 + 49279 29944 30856 30870 56795 56795 0.10184084279887884 VLIHLILTV 9 Unmodified _VLIHLILTV_ 0 0 0 L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|293|2|anti-sense L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|293|2|anti-sense L1PA7_dup7511|chr9:100231360-100237810:-|1.686729489318808|0.1520501553472245|3.47|151.0|293|2|anti-sense MSMS UPN47_class_I_Rep_1 2 510.84429931640625 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.725 1 75.1 74.6 75.6 3.3751 0 0 0 0.1074 1 17506 17506 23.148 0 1 49280 14883 30857 30871 56796 56796 0.16525257793171022 VLIITKPP 8 Unmodified _VLIITKPP_ 0 0 0 REV__L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|43|2|sense REV__L1PB1_dup2365|chr3:111639206-111642531:+|12.23584643999678|0.1858606230514513|6.04|151.0|43|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.29705810546875 2 440.796946 879.57934 0.14779 6.5145E-05 1.8381 0.00081022 1.9859 0.00087537 440.7994038862202 65.932 0.83514 69.418 69.041 69.876 3.4866 95 58 2 0 0 0 0.82752 1 14984 14984 2.3027 1.5091 1 131600 + 49281 30368 30858 30872 56797 56797 0.1347332432198982 VLIKLKSFLH 10 Unmodified _VLIKLKSFLH_ 0 0 0 L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 599.390380859375 2 599.389534 1196.76451 NaN NaN NaN NaN NaN NaN NaN 31.411 1 35.14 34.64 35.64 3.7293 0 0 0 0.53105 1 5266 5266 0.45834 0 1 49282 14727 30859 30873 56798 56798 0.17400307121624792 VLIKLKSFLH 10 Unmodified _VLIKLKSFLH_ 0 0 0 L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 599.3895874023438 2 599.389534 1196.76451 NaN NaN NaN NaN NaN NaN NaN 31.782 1 35.423 34.923 35.923 3.641 0 0 0 0.53105 1 4824 4824 0.45834 0 1 49283 14727 30859 30873 56799 56799 0.17400307121624792 VLIKLKSFLH 10 Unmodified _VLIKLKSFLH_ 0 0 0 L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 599.2932739257812 2 599.389534 1196.76451 NaN NaN NaN NaN NaN NaN NaN 31.815 1 35.516 35.016 36.016 3.7015 0 0 0 0.53105 1 4758 4758 0.45834 0 1 49284 14727 30859 30873 56800 56800 0.17400307121624792 VLIKLKSFLH 10 Unmodified _VLIKLKSFLH_ 0 0 0 L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 599.39111328125 2 599.389534 1196.76451 NaN NaN NaN NaN NaN NaN NaN 31.841 1 35.542 35.042 36.042 3.7015 0 0 0 0.53105 1 4764 4764 0.45834 0 1 49285 14727 30859 30873 56801 56801 0.17400307121624792 VLIKMKKLKL 10 Unmodified _VLIKMKKLKL_ 0 0 0 ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF ENST00000490863.5_1_1:54651905-54653456:-|nuORF ENST00000490863.5_1_1:54651905-54653456:-|nuORF MSMS UPN48_class_I_Rep_2 6 405.28466796875 3 405.2858 1212.83557 NaN NaN NaN NaN NaN NaN NaN 107.52 1 111.2 110.7 111.7 3.6783 0 0 0 0.53105 1 25414 25414 0.69767 0 1 49286 6675 30860 30874 56802 56802 0.2376668383476499 VLIKTRGVRR 10 Unmodified _VLIKTRGVRR_ 0 0 0 ENSG00000178567|ENST00000322716|EPM2AIP1 ENSG00000178567|ENST00000322716|EPM2AIP1 ENSG00000178567|ENST00000322716|EPM2AIP1 MSMS UPN47_class_I_Rep_2 3 599.3804321289062 2 599.398756 1196.78296 NaN NaN NaN NaN NaN NaN NaN 95.561 1 99.036 98.536 99.536 3.4753 0 0 0 0.53105 1 23517 23517 1.3295 0.80477 1 49287 4825 30861 30875 56803 56803 0.19243861816153185 VLIKVAAR 8 Unmodified _VLIKVAAR_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MULTI-MSMS UPN47_class_I_Rep_1 2 435.30035400390625 2 435.300188 868.585822 -0.002822 -1.2284E-06 0.08554 3.7236E-05 0.082718 3.6007E-05 435.30023230347257 65.723 0.36086 69.08 68.934 69.295 3.3576 29 20 2 0 0 0 0.82752 1 15696 15696 0.69038 0 1 237660 + 49288 20804 30862 30876 56804 56804 0.14627262273359065 VLIKVAAR 8 Unmodified _VLIKVAAR_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MULTI-MSMS UPN47_class_I_Rep_3 4 435.30010986328125 2 435.300188 868.585822 -0.41239 -0.00017951 0.58134 0.00025306 0.16895 7.3545E-05 435.3004048323713 65.952 0.39084 69.137 68.973 69.363 3.1853 36 22 2 0 0 0 0.82752 1 15882 15882 0.69038 0 1 160630 + 49289 20804 30862 30876 56805 56805 0.14627262273359065 VLIKVAAR 8 Unmodified _VLIKVAAR_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.300188 868.585822 -0.43533 -0.0001895 0.36387 0.00015839 -0.071457 -3.1105E-05 435.30015106650086 65.467 0.13702 68.723 68.62 68.757 3.2556 -0.25717 7.7864E-05 NaN 0.69038 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 50920 + 49290 20804 30862 30876 0.14627262273359065 VLILKRTKIS 10 Unmodified _VLILKRTKIS_ 0 0 0 REV__L1MD2_dup2200|chr3:138191361-138192275:-|1.310101834430361|0.0144070356730957|6.51|151.0|40|1|anti-sense REV__L1MD2_dup2200|chr3:138191361-138192275:-|1.310101834430361|0.0144070356730957|6.51|151.0|40|1|anti-sense MSMS UPN47_class_I_Rep_1 2 585.9005737304688 2 585.900266 1169.78598 NaN NaN NaN NaN NaN NaN NaN 56.963 1 60.42 59.92 60.92 3.4572 0 0 0 0.53105 1 13050 13050 0.40072 0 1 + 49291 27394 30863 30877 56806 56806 0.2078769215029297 VLILPARV 8 Unmodified _VLILPARV_ 0 0 0 L1MD1_dup1751|chr4:99917567-99919302:-|2.5017964070919985|0.2011087092181904|3.64|151.0|26|2|sense L1MD1_dup1751|chr4:99917567-99919302:-|2.5017964070919985|0.2011087092181904|3.64|151.0|26|2|sense L1MD1_dup1751|chr4:99917567-99919302:-|2.5017964070919985|0.2011087092181904|3.64|151.0|26|2|sense MSMS UPN48_class_I_Rep_3 7 440.80078125 2 440.802563 879.590573 NaN NaN NaN NaN NaN NaN NaN 74.564 1 78.115 77.615 78.615 3.5505 0 0 0 0.40738 1 17472 17472 0.79363 0 1 49292 11921 30864 30878 56807 56807 0.1459614641612461 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_1 2 640.9732055664062 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 41.209 1 44.881 44.381 45.381 3.6719 0 0 0 0.38417 1 8250 8250 0 0 1 49293 6532 30865 30879 56808 56808 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_1 2 640.9733276367188 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.592 1 47.287 46.787 47.787 3.6951 0 0 0 0.38417 1 8979 8979 0 0 1 49294 6532 30865 30879 56809 56809 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.97265625 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 41.607 1 44.973 44.473 45.473 3.3655 0 0 0 0.38417 1 8400 8400 0 0 1 49295 6532 30865 30879 56810 56810 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9722900390625 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.138 1 46.496 45.996 46.996 3.358 0 0 0 0.38417 1 8868 8868 0 0 1 49296 6532 30865 30879 56811 56811 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9734497070312 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.244 1 46.602 46.102 47.102 3.358 0 0 0 0.38417 1 8901 8901 0 0 1 49297 6532 30865 30879 56812 56812 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9735717773438 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.384 1 46.742 46.242 47.242 3.358 0 0 0 0.38417 1 8944 8944 0 0 1 49298 6532 30865 30879 56813 56813 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9738159179688 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.562 1 46.92 46.42 47.42 3.358 0 0 0 0.38417 1 8998 8998 0 0 1 49299 6532 30865 30879 56814 56814 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9725952148438 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.601 1 46.959 46.459 47.459 3.358 0 0 0 0.38417 1 9010 9010 0 0 1 49300 6532 30865 30879 56815 56815 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9736328125 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 43.752 1 47.11 46.61 47.61 3.358 0 0 0 0.38417 1 9056 9056 0 0 1 49301 6532 30865 30879 56816 56816 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_2 3 640.9730224609375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 44.211 1 47.566 47.066 48.066 3.3556 0 0 0 0.38417 1 9197 9197 0 0 1 49302 6532 30865 30879 56817 56817 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_3 4 640.972900390625 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 44.598 1 47.842 47.342 48.342 3.2441 0 0 0 0.38417 1 9368 9368 0 0 1 49303 6532 30865 30879 56818 56818 0.30314574666340377 VLILVIVKKKK 11 Unmodified _VLILVIVKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS UPN47_class_I_Rep_3 4 641.015380859375 2 640.973234 1279.93191 NaN NaN NaN NaN NaN NaN NaN 44.929 1 48.173 47.673 48.673 3.2441 0 0 0 0.38417 1 9469 9469 0 0 1 49304 6532 30865 30879 56819 56819 0.30314574666340377 VLILYRKS 8 Unmodified _VLILYRKS_ 0 0 0 REV__L1MC4_dup4054|chr3:5164417-5165209:-|1.6006793775795178|0.0585347569170531|4.77|151.0|25|3|sense REV__L1MC4_dup4054|chr3:5164417-5165209:-|1.6006793775795178|0.0585347569170531|4.77|151.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 496.3185729980469 2 496.318577 990.622602 NaN NaN NaN NaN NaN NaN NaN 63.065 1 66.321 65.821 66.821 3.2558 0 0 0 0.40527 1 14937 14937 3.5965 0 1 + 49305 26910 30866 30880 56820 56820 0.12691514099276446 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN46_class_I_Rep_3 1 510.8445129394531 2 510.844428 1019.6743 0.29697 0.00015171 -0.34141 -0.00017441 -0.044442 -2.2703E-05 510.8440412493813 78.262 0.14273 78.262 78.137 78.28 0 24 17 3 0 0 0 0.13631 1 18322 18322 26.884 5.137 1 149570 49306 4559 30867 30881 56821 56821 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN46_class_I_Rep_3 1 510.8444519042969 2 510.844428 1019.6743 0.29801 0.00015224 -1.1739 -0.00059968 -0.87588 -0.00044744 510.8442707055666 78.572 0.14942 78.572 78.517 78.667 0 24 12 3 0 0 0 0.13631 1 18402 18402 26.884 5.137 1 26410000 49307 4559 30867 30881 56822 56822 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-SECPEP UPN46_class_I_Rep_3 1 511.23956298828125 2 510.844428 1019.6743 0.29838 0.00015243 -0.43302 -0.0002212 -0.13463 -6.8775E-05 510.8441754311128 78.762 0.051712 78.762 78.734 78.785 0 7 5 2 0 0 0 0.044513 1 18461 18461 48.346 12.302 1 33077 49308 4559 30867 30881 56823 56823 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_1 2 510.844482421875 2 510.844428 1019.6743 0.22109 0.00011294 -0.028582 -1.4601E-05 0.19251 9.8343E-05 510.84431168841985 71.341 0.94789 74.716 74.155 75.103 3.3751 197 81 4 0 0 0 0.074367 2 17390 17350;17390 39.957 11.47 1 1468800 49309 4559 30867 30881 56824;56825 56825 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_1 2 510.8443298339844 2 510.844428 1019.6743 0.22506 0.00011497 -0.07019 -3.5856E-05 0.15487 7.9116E-05 510.8442933601745 71.88 0.86156 75.255 75.103 75.965 3.3751 110 65 3 0 0 0 0.13631 3 17542 17542;17623;17631 26.884 5.137 1 540990 49310 4559 30867 30881 56826;56827;56828 56826 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MSMS UPN47_class_I_Rep_1 2 510.8443603515625 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.473 1 74.848 74.348 75.348 3.3751 0 0 0 0.089203 1 17429 17429 26.884 5.137 1 49311 4559 30867 30881 56829 56829 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_2 3 510.8443603515625 2 510.844428 1019.6743 0.10816 5.5254E-05 0.057388 2.9316E-05 0.16555 8.457E-05 510.8443481283253 71.662 1.0833 74.952 74.364 75.447 3.2899 294 97 4 0 0 0 0.041849 7 17519 17405;17443;17479;17519;17556;17596;17633 52.268 12.311 1 1113700 49312 4559 30867 30881 56830;56831;56832;56833;56834;56835;56836 56833 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_2 3 510.8443603515625 2 510.844428 1019.6743 0.11535 5.8928E-05 0.068635 3.5062E-05 0.18399 9.399E-05 510.84436297451373 72.24 0.73434 75.538 75.412 76.146 3.2971 83 65 2 0 0 0 0.13631 2 17668 17668;17705 26.884 5.137 1 264500 49313 4559 30867 30881 56837;56838 56837 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_3 4 510.8443908691406 2 510.844428 1019.6743 0.27267 0.00013929 -0.11773 -6.0141E-05 0.15494 7.915E-05 510.84426379184623 71.819 0.83963 75.038 74.372 75.212 3.2188 218 68 4 0 0 0 0.056917 5 17602 17526;17562;17602;17643;17684 46.021 17.534 1 1177900 49314 4559 30867 30881 56839;56840;56841;56842;56843 56841 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS UPN47_class_I_Rep_3 4 510.8443603515625 2 510.844428 1019.6743 0.27409 0.00014002 -0.13457 -6.8747E-05 0.13951 7.1269E-05 510.8442475859309 72.051 1.2011 75.269 75.203 76.405 3.2188 220 106 4 0 0 0 0.09884 4 17722 17722;17762;17802;17884 34.102 5.6156 1 801870 49315 4559 30867 30881 56844;56845;56846;56847 56844 0.1652525779318239 VLIQKQGLA 9 Unmodified _VLIQKQGLA_ 0 0 0 AluJr_dup84299|chr22:29228571-29228895:-|1.123063408379767|0.0323678240987071|5.12|148.0|18|2|anti-sense AluJr_dup84299|chr22:29228571-29228895:-|1.123063408379767|0.0323678240987071|5.12|148.0|18|2|anti-sense AluJr_dup84299|chr22:29228571-29228895:-|1.123063408379767|0.0323678240987071|5.12|148.0|18|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 485.8115234375 2 485.30821 968.601866 0.28549 0.00013855 0.79453 0.00038559 1.08 0.00052414 485.308029029098 59.93 1.0975 63.203 62.634 63.732 3.2731 178 68 4 0 0 0 0.48643 1 13872 13872 2.0598 0 1 1360900 49316 187 30868 30882 56848 56848 0.11630923719610564 VLIRDDDV 8 Unmodified _VLIRDDDV_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 472.7562561035156 2 472.756007 943.497461 -0.31643 -0.00014959 0.31542 0.00014912 -0.001011 -4.7795E-07 472.75604804629836 35.494 0.42189 39.17 38.966 39.388 3.6762 33 26 2 0 0 0 0.82752 1 6521 6521 2.3027 0 1 65897 49317 6744 30869 30883 56849 56849 0.023451771722307058 VLIRNPRM 8 Unmodified _VLIRNPRM_ 0 0 0 L1MB4_dup6991|chr14:101895302-101896007:-|1.326568839461753|0.1036223876961297|3.68|151.0|4|1|sense L1MB4_dup6991|chr14:101895302-101896007:-|1.326568839461753|0.1036223876961297|3.68|151.0|4|1|sense L1MB4_dup6991|chr14:101895302-101896007:-|1.326568839461753|0.1036223876961297|3.68|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 499.8085632324219 2 499.800029 997.585505 NaN NaN NaN NaN NaN NaN NaN 111.52 1 115.19 114.69 115.69 3.6666 0 0 0 0.40746 1 26530 26530 0.69038 0 1 49318 10563 30870 30884 56850 56850 0.08661519281861274 VLIRVPPKK 9 Unmodified _VLIRVPPKK_ 0 0 0 REV__L1ME4a_dup11568|chr5:137978124-137978455:-|1.6238445145548843|0.026824514613549|5.92|151.0|16|1|anti-sense REV__L1ME4a_dup11568|chr5:137978124-137978455:-|1.6238445145548843|0.026824514613549|5.92|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_3 7 525.3637084960938 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 75.9 1 79.484 78.984 79.984 3.5831 0 0 0 0.4007 1 17856 17856 0.52476 0 1 + 49319 28210 30871 30885 56851 56851 0.18967768778634309 VLISERVVG 9 Unmodified _VLISERVVG_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|247|3|anti-sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|247|3|anti-sense MSMS UPN47_class_I_Rep_3 4 486.298583984375 2 486.297842 970.581131 NaN NaN NaN NaN NaN NaN NaN 55.587 1 58.765 58.265 59.265 3.1779 0 0 0 0.17222 1 12714 12714 18.146 4.2403 1 + 49320 28937 30872 30886 56852 56852 0.09466333339958055 VLISERVVG 9 Unmodified _VLISERVVG_ 0 0 0 REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|247|3|anti-sense REV__L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|247|3|anti-sense MSMS UPN47_class_I_Rep_3 4 486.2982177734375 2 486.297842 970.581131 NaN NaN NaN NaN NaN NaN NaN 55.794 1 58.972 58.472 59.472 3.1779 0 0 0 0.31276 1 12778 12778 10.074 0 1 + 49321 28937 30872 30886 56853 56853 0.09466333339958055 VLIVIILRPA 10 Unmodified _VLIVIILRPA_ 0 0 0 MER49_dup454|chr5:43097538-43098393:+|1.7013862123563197|0.3103642336993636|2.45|151.0|43|1|anti-sense MER49_dup454|chr5:43097538-43098393:+|1.7013862123563197|0.3103642336993636|2.45|151.0|43|1|anti-sense MER49_dup454|chr5:43097538-43098393:+|1.7013862123563197|0.3103642336993636|2.45|151.0|43|1|anti-sense MSMS UPN46_class_I_Rep_3 1 553.8881225585938 2 553.886627 1105.7587 NaN NaN NaN NaN NaN NaN NaN 102.41 1 102.41 101.91 102.91 0 0 0 0 0.53105 1 24988 24988 0 0 1 49322 16012 30873 30887 56854 56854 0.21005208609972215 VLIVLKSVFMF 11 Unmodified _VLIVLKSVFMF_ 0 0 0 REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|309|2|anti-sense REV__L1PA7_dup3230|chr4:74209213-74215659:-|1.2714712740621756|0.0915778340277876|3.8|151.0|309|2|anti-sense MSMS UPN48_class_I_Rep_3 7 648.39208984375 2 648.393428 1294.7723 NaN NaN NaN NaN NaN NaN NaN 117 1 120.63 120.13 121.13 3.6312 0 0 0 0.38417 1 27842 27842 0.30703 0 1 + 49323 30069 30874 30888 56855 56855 0.13670698326882302 VLIVQLPV 8 Unmodified _VLIVQLPV_ 0 0 0 L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|85|1|anti-sense;L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|74|2|anti-sense;L1PA8_dup7253|chr17:2660231-2661644:-|2.797028458075789|0.1103963523786063|4.66|151.0|62|2|anti-sense L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|85|1|anti-sense L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|85|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7991638183594 2 440.796946 879.57934 0.12342 5.4403E-05 2.8811 0.00127 3.0045 0.0013244 440.7990976031053 46.829 0.17489 46.829 46.689 46.864 0 19 14 2 0 0 0 0.82752 1 9634 9634 0.79363 0 1 67300 49324 14699 30875 30889 56856 56856 0.1347332432200119 VLKCISQPEN 10 Unmodified _VLKCISQPEN_ 0 0 0 ENST00000295924.11_2_3:156423417-156423531:+|nuORF ENST00000295924.11_2_3:156423417-156423531:+|nuORF ENST00000295924.11_2_3:156423417-156423531:+|nuORF MSMS UPN48_class_I_Rep_2 6 565.8358764648438 2 565.797349 1129.58014 NaN NaN NaN NaN NaN NaN NaN 24.054 1 27.694 27.194 28.194 3.6397 0 0 0 0.53105 1 2730 2730 1.4819 0 1 49325 6057 30876 30890 56857 56857 0.02053750908726215 VLKDLVHF 8 Unmodified _VLKDLVHF_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|241|3|anti-sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|241|3|anti-sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|241|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 485.2848815917969 2 485.789653 969.564752 0.33409 0.0001623 0.35259 0.00017128 0.68668 0.00033358 485.79155806259325 53.931 0.076508 57.513 57.443 57.519 3.5817 5 4 2 0 0 0 0.72333 1 11348 11348 0.79363 0 1 25005 49326 11994 30877 30891 56858 56858 0.07875252173846548 VLKDQTDK 8 Unmodified _VLKDQTDK_ 0 0 0 ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|11|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|2|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|4|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|12|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|3|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|5|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|1|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|8|intron;ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|10|intron;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|11|intron ENSG00000144674.16,GOLGA4,chr3,+,I28.1,37347297,37355100|34|6.8|11|intron MSMS UPN46_class_I_Rep_3 1 474.0636291503906 2 473.763832 945.513111 NaN NaN NaN NaN NaN NaN NaN 52.065 1 52.065 51.565 52.565 0 0 0 0 0.40625 1 11109 11109 2.3027 0 1 49327 3367 30878 30892 56859 56859 0.03817463689267697 VLKEIVERV 9 Unmodified _VLKEIVERV_ 0 0 0 nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 nc|ENSG00000135387|Q14444-2|CAPRIN1 MSMS UPN47_class_I_Rep_2 3 542.8397216796875 2 542.839874 1083.66519 NaN NaN NaN NaN NaN NaN NaN 43.954 1 47.312 46.812 47.812 3.358 0 0 0 0.3824 1 9118 9118 4.897 0 1 49328 2905 30879 30893 56860 56860 0.12670864436836382 VLKEKKIT 8 Unmodified _VLKEKKIT_ 0 0 0 L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|53|2|sense L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|53|2|sense L1M1_dup2674|chr4:173203391-173206457:-|2.58147834899071|0.0854272006309881|4.92|151.0|53|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.8175354003906 2 479.81841 957.622267 -0.30899 -0.00014826 -0.30753 -0.00014756 -0.61652 -0.00029582 479.8182301238954 33.406 0.52854 37.104 36.813 37.342 3.6983 55 34 2 0 0 0 0.82752 2 5811 5811;5942 4.3292 0 1 92533 49329 8532 30880 30894 56861;56862 56861 0.14176094379399728 VLKEKKKL 8 Unmodified _VLKEKKKL_ 0 0 0 L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|22|3|sense;L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|22|1|sense L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|22|3|sense L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 493.3418884277344 2 493.342052 984.669552 NaN NaN NaN NaN NaN NaN NaN 25.525 1 29.274 28.774 29.774 3.7495 0 0 0 0.40659 1 3515 3515 1.8442 0 1 49330 8580 30881 30895 56863 56863 0.1766037365041484 VLKEKRSL 8 Unmodified _VLKEKRSL_ 0 0 0 nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 MULTI-SECPEP UPN47_class_I_Rep_2 3 487.3639221191406 2 486.813659 971.612765 -0.14685 -7.1489E-05 -0.82863 -0.00040339 -0.97548 -0.00047488 486.8132354317115 15.175 0.38879 18.562 18.44 18.828 3.3864 68 44 2 0 0 0 0.72333 1 750 750 12.241 0 1 54522 49331 3043 30882 30896 56864 56864 0.12582326093888696 VLKEREEI 8 Unmodified _VLKEREEI_ 0 0 0 REV__ENST00000475506.1_1_1:17354162-17371284:-|nuORF REV__ENST00000475506.1_1_1:17354162-17371284:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 508.2924499511719 2 508.292756 1014.57096 0.33391 0.00016972 -0.50033 -0.00025431 -0.16642 -8.4589E-05 508.29242316613175 52.173 0.52619 55.378 55.096 55.623 3.2055 60 33 2 0 0 0 0.82752 1 11693 11693 11.64 0 1 126780 + 49332 22534 30883 30897 56865 56865 0.06425725614712974 VLKERKLS 8 Unmodified _VLKERKLS_ 0 0 0 L1MD2_dup3881|chr6:151414830-151415580:+|1.1933814776836111|0.1079663138083577|3.47|151.0|11|2|sense L1MD2_dup3881|chr6:151414830-151415580:+|1.1933814776836111|0.1079663138083577|3.47|151.0|11|2|sense L1MD2_dup3881|chr6:151414830-151415580:+|1.1933814776836111|0.1079663138083577|3.47|151.0|11|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 487.3641052246094 2 486.813659 971.612765 -0.36161 -0.00017604 -0.5273 -0.0002567 -0.88891 -0.00043273 486.8133930684774 15.063 0.26701 18.538 18.429 18.696 3.475 56 31 2 0 0 0 0.72333 1 735 735 3.5965 0 1 80892 49333 11998 30884 30898 56866 56866 0.12582326093888696 VLKERKLS 8 Unmodified _VLKERKLS_ 0 0 0 L1MD2_dup3881|chr6:151414830-151415580:+|1.1933814776836111|0.1079663138083577|3.47|151.0|11|2|sense L1MD2_dup3881|chr6:151414830-151415580:+|1.1933814776836111|0.1079663138083577|3.47|151.0|11|2|sense L1MD2_dup3881|chr6:151414830-151415580:+|1.1933814776836111|0.1079663138083577|3.47|151.0|11|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 487.364013671875 2 486.813659 971.612765 -0.69508 -0.00033838 -0.44563 -0.00021694 -1.1407 -0.00055531 486.81350303063044 15.285 0.35514 18.651 18.495 18.85 3.3659 61 39 2 0 0 0 0.72333 1 741 741 6.7232 0 1 52379 49334 11998 30884 30898 56867 56867 0.12582326093888696 VLKEVIQQK 9 Unmodified _VLKEVIQQK_ 0 0 0 L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense MSMS UPN47_class_I_Rep_1 2 542.8391723632812 2 542.839874 1083.66519 NaN NaN NaN NaN NaN NaN NaN 43.376 1 47.064 46.564 47.564 3.6875 0 0 0 0.38916 1 8913 8913 3.2813 0 1 49335 12434 30885 30899 56868 56868 0.12670864436836382 VLKEVIQQK 9 Unmodified _VLKEVIQQK_ 0 0 0 L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense MSMS UPN47_class_I_Rep_2 3 542.7565307617188 2 542.839874 1083.66519 NaN NaN NaN NaN NaN NaN NaN 43.973 1 47.331 46.831 47.831 3.358 0 0 0 0.38916 1 9124 9124 3.2813 0 1 49336 12434 30885 30899 56869 56869 0.12670864436836382 VLKEVIQQK 9 Unmodified _VLKEVIQQK_ 0 0 0 L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense L1ME1_dup7140|chr3:177153165-177153605:+|1.191081241166618|0.0102069696284692|6.87|151.0|14|3|sense MSMS UPN47_class_I_Rep_3 4 542.8392944335938 2 542.839874 1083.66519 NaN NaN NaN NaN NaN NaN NaN 43.976 1 47.218 46.718 47.718 3.2419 0 0 0 0.39598 1 9178 9178 1.6526 0 1 49337 12434 30885 30899 56870 56870 0.12670864436836382 VLKFLFLNN 9 Unmodified _VLKFLFLNN_ 0 0 0 MER45A_dup2914|chr17:29739276-29739419:+|2.21306163595932|0.0377321380744118|5.87|151.0|3|2|sense MER45A_dup2914|chr17:29739276-29739419:+|2.21306163595932|0.0377321380744118|5.87|151.0|3|2|sense MER45A_dup2914|chr17:29739276-29739419:+|2.21306163595932|0.0377321380744118|5.87|151.0|3|2|sense MSMS UPN47_class_I_Rep_1 2 554.3298950195312 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 26.805 1 30.571 30.071 31.071 3.7662 0 0 0 0.39518 1 3890 3890 1.8442 0 1 49338 15994 30886 30900 56871 56871 0.09975783270738248 VLKFLPLMR 9 Unmodified _VLKFLPLMR_ 0 0 0 REV__ENST00000482079.1_2_3:55514986-55515127:-|nuORF REV__ENST00000482079.1_2_3:55514986-55515127:-|nuORF MSMS UPN47_class_I_Rep_1 2 558.8507690429688 2 558.85173 1115.68891 NaN NaN NaN NaN NaN NaN NaN 90.569 1 94.259 93.759 94.759 3.6899 0 0 0 0.4007 1 22623 22623 0.52476 0 1 + 49339 22571 30887 30901 56872 56872 0.1356900666967249 VLKFNYFWS 9 Unmodified _VLKFNYFWS_ 0 0 0 ENST00000561539.1_1_16:28836974-28837213:+|nuORF;ENST00000566080.1_1_16:28837054-28837213:+|nuORF ENST00000561539.1_1_16:28836974-28837213:+|nuORF ENST00000561539.1_1_16:28836974-28837213:+|nuORF MSMS UPN48_class_I_Rep_1 5 401.87744140625 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 15.951 1 19.472 18.972 19.972 3.5217 0 0 0 0.4007 1 711 711 0.23584 0 1 49340 7461 30888 30902 56873 56873 0.01922906374034028 VLKFPFNFL 9 Unmodified _VLKFPFNFL_ 0 0 0 L1M3f_dup43|chr1:174904937-174905570:+|1.078653939658795|0.0120727289085168|6.48|151.0|49|3|anti-sense L1M3f_dup43|chr1:174904937-174905570:+|1.078653939658795|0.0120727289085168|6.48|151.0|49|3|anti-sense L1M3f_dup43|chr1:174904937-174905570:+|1.078653939658795|0.0120727289085168|6.48|151.0|49|3|anti-sense MSMS UPN46_class_I_Rep_3 1 562.8289794921875 2 562.828778 1123.643 NaN NaN NaN NaN NaN NaN NaN 102.68 1 102.68 102.18 103.18 0 0 0 0 0.4007 1 25059 25059 0.52476 0 1 49341 8802 30889 30903 56874 56874 0.08612684759077638 VLKFQRTFR 9 Unmodified _VLKFQRTFR_ 0 0 0 Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|27|2|sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|27|2|sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|27|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 597.3573608398438 2 597.858932 1193.70331 0.57584 0.00034427 -2.7934 -0.0016701 -2.2176 -0.0013258 598.3591773623034 91.965 0.14076 91.965 91.878 92.019 0 21 13 2 0 0 0 0.12462 1 22230 22230 1.8442 0 1 165060 49342 33193 30890 30904 56875 56875 0.11420795142157658 VLKFQRTFR 9 Unmodified _VLKFQRTFR_ 0 0 0 Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|27|2|sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|27|2|sense Tigger1_dup8243|chr10:93026465-93028025:+|2.2164643915875666|0.0722331463763236|4.94|151.0|27|2|sense MSMS UPN47_class_I_Rep_3 4 597.8568115234375 2 597.858932 1193.70331 NaN NaN NaN NaN NaN NaN NaN 84.969 1 88.33 87.83 88.83 3.3615 0 0 0 0.39518 1 21316 21316 1.8442 0 1 49343 33193 30890 30904 56876 56876 0.11420795142157658 VLKGVPLR 8 Unmodified _VLKGVPLR_ 0 0 0 Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|330|3|anti-sense Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|330|3|anti-sense Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|330|3|anti-sense MSMS UPN48_class_I_Rep_1 5 441.76995849609375 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 74.829 1 78.319 77.819 78.819 3.49 0 0 0 0.40604 1 17699 17699 2.5775 0 1 49344 7969 30891 30905 56877 56877 0.14075262273354383 VLKHRKPI 8 Unmodified _VLKHRKPI_ 0 0 0 REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense MSMS UPN47_class_I_Rep_1 2 495.7716369628906 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 50.318 1 53.946 53.446 54.446 3.6285 0 0 0 0.40746 1 11023 11023 0.69038 0 1 + 49345 27593 30892 30906 56878 56878 0.15458042430316254 VLKHRKPI 8 Unmodified _VLKHRKPI_ 0 0 0 REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense MSMS UPN47_class_I_Rep_2 3 495.83331298828125 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 76.573 1 79.903 79.403 80.403 3.3298 0 0 0 0.40746 1 18959 18959 0.69038 0 1 + 49346 27593 30892 30906 56879 56879 0.15458042430316254 VLKHRKPI 8 Unmodified _VLKHRKPI_ 0 0 0 REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense MSMS UPN47_class_I_Rep_2 3 495.8330993652344 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 76.766 1 80.097 79.597 80.597 3.3315 0 0 0 0.40746 1 19013 19013 0.69038 0 1 + 49347 27593 30892 30906 56880 56880 0.15458042430316254 VLKHRKPI 8 Unmodified _VLKHRKPI_ 0 0 0 REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense MSMS UPN47_class_I_Rep_3 4 495.7965087890625 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 76.68 1 79.949 79.449 80.449 3.269 0 0 0 0.40746 1 19072 19072 0.69038 0 1 + 49348 27593 30892 30906 56881 56881 0.15458042430316254 VLKHRKPI 8 Unmodified _VLKHRKPI_ 0 0 0 REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense MSMS UPN47_class_I_Rep_3 4 495.833984375 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 76.726 1 79.995 79.495 80.495 3.269 0 0 0 0.40746 1 19084 19084 0.69038 0 1 + 49349 27593 30892 30906 56882 56882 0.15458042430316254 VLKHRKPI 8 Unmodified _VLKHRKPI_ 0 0 0 REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense REV__L1ME1_dup12891|chr7:8031712-8034584:+|1.3232964726650325|0.0274389755303937|5.59|151.0|51|2|sense MSMS UPN48_class_I_Rep_2 6 495.8327331542969 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 76.406 1 80.007 79.507 80.507 3.6011 0 0 0 0.40746 1 18037 18037 0.69038 0 1 + 49350 27593 30892 30906 56883 56883 0.15458042430316254 VLKIEIILFL 10 Unmodified _VLKIEIILFL_ 0 0 0 HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|160|3|anti-sense HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|160|3|anti-sense HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|160|3|anti-sense MSMS UPN48_class_I_Rep_2 6 600.8994140625 2 600.901943 1199.78933 NaN NaN NaN NaN NaN NaN NaN 92.045 1 95.808 95.308 96.308 3.7629 0 0 0 0.53105 1 21912 21912 1.4819 0 1 49351 8329 30893 30907 56884 56884 0.19742942204311476 VLKIFLIRR 9 Unmodified _VLKIFLIRR_ 0 0 0 L1ME3Cz_dup12146|chr22:49654665-49655122:+|2.010810978809293|0.0236860144001191|6.41|151.0|30|3|anti-sense L1ME3Cz_dup12146|chr22:49654665-49655122:+|2.010810978809293|0.0236860144001191|6.41|151.0|30|3|anti-sense L1ME3Cz_dup12146|chr22:49654665-49655122:+|2.010810978809293|0.0236860144001191|6.41|151.0|30|3|anti-sense MSMS UPN47_class_I_Rep_3 4 579.4002075195312 2 579.397693 1156.78083 NaN NaN NaN NaN NaN NaN NaN 89.372 1 92.765 92.265 93.265 3.3931 0 0 0 0.4007 1 22408 22408 0.52476 0 1 49352 12766 30894 30908 56885 56885 0.2087143307835504 VLKIIASY 8 Unmodified _VLKIIASY_ 0 0 0 ENST00000604759.1_1_14:39684672-39685536:+|nuORF;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2 ENST00000604759.1_1_14:39684672-39685536:+|nuORF ENST00000604759.1_1_14:39684672-39685536:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.7846374511719 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 74.131 1 77.521 77.021 78.021 3.3898 0 0 0 0.40643 1 18233 18233 2.0598 0 1 49353 7672 30895 30909 56886 56886 0.1020473394231658 VLKIKERLE 9 Unmodified _VLKIKERLE_ 0 0 0 L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|7|2|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|7|2|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 564.1698608398438 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 82.81 1 82.81 82.31 83.31 0 0 0 0 0.40098 1 19637 19637 0.45834 0 1 49354 11510 30896 30910 56887 56887 0.14910839845242663 VLKIKERLE 9 Unmodified _VLKIKERLE_ 0 0 0 L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|7|2|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|7|2|sense L1MC4_dup5746|chr3:196648791-196649115:-|2.354132267693616|0.031748860022184|6.21|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 564.3595581054688 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 82.986 1 86.384 85.884 86.884 3.3984 0 0 0 0.40098 1 20683 20683 0.45834 0 1 49355 11510 30896 30910 56888 56888 0.14910839845242663 VLKIKGTSI 9 Unmodified _VLKIKGTSI_ 0 0 0 REV__L1M1_dup695|chr2:97254476-97256073:-|1.2584295962685943|0.261251001927305|2.27|151.0|17|1|sense REV__L1M1_dup695|chr2:97254476-97256073:-|1.2584295962685943|0.261251001927305|2.27|151.0|17|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.81817626953125 2 479.81841 957.622267 -0.48855 -0.00023442 0.12897 6.1884E-05 -0.35958 -0.00017253 479.818407617877 34.034 0.59364 37.309 36.911 37.504 3.2748 76 40 2 0 0 0 0.17897 1 6137 6137 22.736 0 1 97426 + 49356 24121 30897 30911 56889 56889 0.14176094379422466 VLKKFKSD 8 Unmodified _VLKKFKSD_ 0 0 0 nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 MULTI-MSMS UPN47_class_I_Rep_1 2 482.7956237792969 2 482.794935 963.575317 0.25124 0.0001213 1.3334 0.00064378 1.5847 0.00076508 482.7953723499552 110.98 0.1911 114.56 114.51 114.7 3.5836 37 23 2 0 0 0 0.82752 1 27394 27394 0.69038 0 1 44995 49357 4302 30898 30912 56890 56890 0.09207234828272703 VLKKFKSD 8 Unmodified _VLKKFKSD_ 0 0 0 nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 nc|ENSG00000167483|Q86XR2-6|NIBAN3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 482.794935 963.575317 0.24201 0.00011684 0.99718 0.00048143 1.2392 0.00059827 482.7954267094357 110.86 0.26881 114.53 114.43 114.7 3.669 -0.018199 -0.00010149 NaN 0.69038 53 34 2 NaN NaN NaN NaN 0 NaN NaN 0 52511 49358 4302 30898 30912 0.09207234828272703 VLKKLKLVL 9 Unmodified _VLKKLKLVL_ 0 0 0 REV__nc|ENSG00000157601|P20591-2|MX1 REV__nc|ENSG00000157601|P20591-2|MX1 MSMS UPN48_class_I_Rep_2 6 527.389892578125 2 527.391545 1052.76854 NaN NaN NaN NaN NaN NaN NaN 25.775 1 29.409 28.909 29.909 3.6332 0 0 0 0.4029 1 3184 3184 0 0 1 + 49359 19824 30899 30913 56891 56891 0.2442639661528574 VLKKMLKFLAK 11 Unmodified _VLKKMLKFLAK_ 0 0 0 ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|3|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|7|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|11|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|2|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|8|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|6|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|9|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|1|intron;nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|4|intron;ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|10|intron ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|3|intron ENSG00000107669.18,ATE1,chr10,-,I2.1,121924330,121927843|28|4.78|3|intron MULTI-MSMS UPN48_class_I_Rep_1 5 440.29217529296875 3 440.292955 1317.85703 0.031141 1.3711E-05 -0.80278 -0.00035346 -0.77164 -0.00033975 440.29226395206626 55.454 1.6877 58.962 58.184 59.871 3.5082 396 116 4 0 0 0 0.68081 3 11789 11668;11789;11828 0.45452 0 1 656270 49360 1827 30900 30914 56892;56893;56894 56893 0.21082068863483983 VLKLFKAKI 9 Unmodified _VLKLFKAKI_ 0 0 0 L1MEc_dup5974|chr5:70990687-70990977:+|2.1359858553373594|0.0326338173511555|6.03|147.0|1|1|sense L1MEc_dup5974|chr5:70990687-70990977:+|2.1359858553373594|0.0326338173511555|6.03|147.0|1|1|sense L1MEc_dup5974|chr5:70990687-70990977:+|2.1359858553373594|0.0326338173511555|6.03|147.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 529.9052734375 2 530.36807 1058.72159 NaN NaN NaN NaN NaN NaN NaN 62.954 1 66.416 65.916 66.916 3.4625 0 0 0 0.4029 1 14132 14132 0 0 1 49361 13118 30901 30915 56895 56895 0.19457537064158714 VLKLILKPIV 10 Unmodified _VLKLILKPIV_ 0 0 0 REV__L1MD_dup414|chr1:174376265-174377546:+|1.7862448429622846|0.0368434725027045|5.6|151.0|42|3|sense REV__L1MD_dup414|chr1:174376265-174377546:+|1.7862448429622846|0.0368434725027045|5.6|151.0|42|3|sense MSMS UPN46_class_I_Rep_3 1 568.7960205078125 2 568.412478 1134.8104 NaN NaN NaN NaN NaN NaN NaN 50.515 1 50.515 50.015 51.015 0 0 0 0 0.53105 1 10677 10677 0 0 1 + 49362 27269 30902 30916 56896 56896 0.24838952303821316 VLKLLIFG 8 Unmodified _VLKLLIFG_ 0 0 0 L1PBa_dup861|chr6:47545146-47546555:+|1.6871630441335477|0.0358445165349998|5.56|151.0|83|3|anti-sense L1PBa_dup861|chr6:47545146-47546555:+|1.6871630441335477|0.0358445165349998|5.56|151.0|83|3|anti-sense L1PBa_dup861|chr6:47545146-47546555:+|1.6871630441335477|0.0358445165349998|5.56|151.0|83|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 452.2691650390625 2 451.807314 901.600075 0.18993 8.5814E-05 -4.4325 -0.0020026 -4.2425 -0.0019168 451.80474260300497 109.18 0.26888 109.18 109.04 109.31 0 21 16 2 0 0 0 0.72333 1 26742 26742 0 0 1 1126200 49363 15395 30903 30917 56897 56897 0.14533914701644335 VLKLLKVQTK 10 Unmodified _VLKLLKVQTK_ 0 0 0 ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1 ENST00000485775.5_1_1:110582506-110596531:+|nuORF ENST00000485775.5_1_1:110582506-110596531:+|nuORF MSMS UPN48_class_I_Rep_1 5 585.4015502929688 2 585.402641 1168.79073 NaN NaN NaN NaN NaN NaN NaN 70.885 1 74.351 73.851 74.851 3.466 0 0 0 0.53105 1 16541 16541 0.40072 0 1 49364 3273 30904 30918 56898 56898 0.21308576293063197 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN46_class_I_Rep_3 1 498.3399963378906 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 30.141 1 30.141 29.641 30.641 0 0 0 0 0.4029 1 4868 4868 0 0 1 + 49365 31984 30905 30919 56899 56899 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN46_class_I_Rep_3 1 498.3399963378906 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 32.82 1 32.82 32.32 33.32 0 0 0 0 0.4029 1 5664 5664 0 0 1 + 49366 31984 30905 30919 56900 56900 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.36376953125 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 53.992 1 57.311 56.811 57.811 3.3187 0 0 0 0.4029 1 12170 12170 0 0 1 + 49367 31984 30905 30919 56901 56901 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.7723083496094 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 55.632 1 58.942 58.442 59.442 3.3102 0 0 0 0.4029 1 12672 12672 0 0 1 + 49368 31984 30905 30919 56902 56902 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.7656555175781 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 58.515 1 61.797 61.297 62.297 3.2818 0 0 0 0.4029 1 13552 13552 0 0 1 + 49369 31984 30905 30919 56903 56903 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.36334228515625 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 59.053 1 62.335 61.835 62.835 3.2818 0 0 0 0.4029 1 13717 13717 0 0 1 + 49370 31984 30905 30919 56904 56904 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.36383056640625 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 59.288 1 62.561 62.061 63.061 3.2731 0 0 0 0.4029 1 13789 13789 0 0 1 + 49371 31984 30905 30919 56905 56905 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.7904052734375 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.351 1 66.606 66.106 67.106 3.2558 0 0 0 0.4029 1 15025 15025 0 0 1 + 49372 31984 30905 30919 56906 56906 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.2742004394531 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.367 1 66.622 66.122 67.122 3.2558 0 0 0 0.4029 1 15030 15030 0 0 1 + 49373 31984 30905 30919 56907 56907 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.3640441894531 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 64.173 1 67.429 66.929 67.929 3.2556 0 0 0 0.4029 1 15270 15270 0 0 1 + 49374 31984 30905 30919 56908 56908 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.3642272949219 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 66.581 1 69.84 69.34 70.34 3.2588 0 0 0 0.4029 1 16004 16004 0 0 1 + 49375 31984 30905 30919 56909 56909 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_2 3 498.3639831542969 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 69.534 1 72.81 72.31 73.31 3.2761 0 0 0 0.4029 1 16891 16891 0 0 1 + 49376 31984 30905 30919 56910 56910 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.36431884765625 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 58.519 1 61.685 61.185 62.185 3.1658 0 0 0 0.4029 1 13603 13603 0 0 1 + 49377 31984 30905 30919 56911 56911 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.3640441894531 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 60.078 1 63.243 62.743 63.743 3.1651 0 0 0 0.4029 1 14082 14082 0 0 1 + 49378 31984 30905 30919 56912 56912 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.3638000488281 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 60.872 1 64.037 63.537 64.537 3.1651 0 0 0 0.4029 1 14322 14322 0 0 1 + 49379 31984 30905 30919 56913 56913 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.2746276855469 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 62.812 1 65.982 65.482 66.482 3.1698 0 0 0 0.4029 1 14918 14918 0 0 1 + 49380 31984 30905 30919 56914 56914 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.3635559082031 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.099 1 66.269 65.769 66.769 3.1698 0 0 0 0.4029 1 15006 15006 0 0 1 + 49381 31984 30905 30919 56915 56915 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.364013671875 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.431 1 66.601 66.101 67.101 3.1698 0 0 0 0.4029 1 15105 15105 0 0 1 + 49382 31984 30905 30919 56916 56916 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.3635559082031 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.852 1 67.026 66.526 67.526 3.1741 0 0 0 0.4029 1 15231 15231 0 0 1 + 49383 31984 30905 30919 56917 56917 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN47_class_I_Rep_3 4 498.3639221191406 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 71.107 1 74.318 73.818 74.818 3.2113 0 0 0 0.4029 1 17432 17432 0 0 1 + 49384 31984 30905 30919 56918 56918 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_1 5 498.3641662597656 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 111.25 1 114.88 114.38 115.38 3.6326 0 0 0 0.4029 1 26989 26989 0 0 1 + 49385 31984 30905 30919 56919 56919 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.36407470703125 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 57.665 1 61.179 60.679 61.679 3.5142 0 0 0 0.4029 1 12491 12491 0 0 1 + 49386 31984 30905 30919 56920 56920 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3636779785156 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 58.629 1 62.128 61.628 62.628 3.4987 0 0 0 0.4029 1 12787 12787 0 0 1 + 49387 31984 30905 30919 56921 56921 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3638610839844 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 58.913 1 62.411 61.911 62.911 3.4987 0 0 0 0.4029 1 12875 12875 0 0 1 + 49388 31984 30905 30919 56922 56922 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3636169433594 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 64.096 1 67.57 67.07 68.07 3.4743 0 0 0 0.4029 1 14462 14462 0 0 1 + 49389 31984 30905 30919 56923 56923 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3641662597656 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 64.268 1 67.742 67.242 68.242 3.4743 0 0 0 0.4029 1 14515 14515 0 0 1 + 49390 31984 30905 30919 56924 56924 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3634338378906 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 66.735 1 70.222 69.722 70.722 3.4866 0 0 0 0.4029 1 15270 15270 0 0 1 + 49391 31984 30905 30919 56925 56925 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3634033203125 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 67.22 1 70.716 70.216 71.216 3.4964 0 0 0 0.4029 1 15418 15418 0 0 1 + 49392 31984 30905 30919 56926 56926 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.36370849609375 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 70.448 1 73.984 73.484 74.484 3.5359 0 0 0 0.4029 1 16388 16388 0 0 1 + 49393 31984 30905 30919 56927 56927 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.36395263671875 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 75.485 1 79.086 78.586 79.586 3.6011 0 0 0 0.4029 1 17804 17804 0 0 1 + 49394 31984 30905 30919 56928 56928 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.364013671875 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 111.86 1 115.53 115.03 116.03 3.6666 0 0 0 0.4029 1 26621 26621 0 0 1 + 49395 31984 30905 30919 56929 56929 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3643493652344 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 112.01 1 115.68 115.18 116.18 3.6666 0 0 0 0.4029 1 26664 26664 0 0 1 + 49396 31984 30905 30919 56930 56930 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.36358642578125 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 112.24 1 115.9 115.4 116.4 3.6648 0 0 0 0.4029 1 26729 26729 0 0 1 + 49397 31984 30905 30919 56931 56931 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_2 6 498.3641052246094 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 112.47 1 116.14 115.64 116.64 3.6648 0 0 0 0.4029 1 26797 26797 0 0 1 + 49398 31984 30905 30919 56932 56932 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.3641357421875 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 59.22 1 62.743 62.243 63.243 3.5231 0 0 0 0.4029 1 12906 12906 0 0 1 + 49399 31984 30905 30919 56933 56933 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.36376953125 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.707 1 67.216 66.716 67.716 3.5091 0 0 0 0.4029 1 14265 14265 0 0 1 + 49400 31984 30905 30919 56934 56934 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.3638610839844 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 63.912 1 67.42 66.92 67.92 3.5083 0 0 0 0.4029 1 14327 14327 0 0 1 + 49401 31984 30905 30919 56935 56935 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.36395263671875 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 64.211 1 67.719 67.219 68.219 3.5083 0 0 0 0.4029 1 14418 14418 0 0 1 + 49402 31984 30905 30919 56936 56936 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.3638610839844 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 65.104 1 68.611 68.111 69.111 3.5077 0 0 0 0.4029 1 14687 14687 0 0 1 + 49403 31984 30905 30919 56937 56937 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.3636474609375 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 65.795 1 69.303 68.803 69.803 3.5077 0 0 0 0.4029 1 14895 14895 0 0 1 + 49404 31984 30905 30919 56938 56938 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.3640441894531 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 71.513 1 75.04 74.54 75.54 3.5266 0 0 0 0.4029 1 16613 16613 0 0 1 + 49405 31984 30905 30919 56939 56939 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.36376953125 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 73.538 1 77.075 76.575 77.575 3.5373 0 0 0 0.4029 1 17212 17212 0 0 1 + 49406 31984 30905 30919 56940 56940 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.3634948730469 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 79.774 1 83.416 82.916 83.916 3.6423 0 0 0 0.4029 1 18920 18920 0 0 1 + 49407 31984 30905 30919 56941 56941 0.21787018832628746 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS UPN48_class_I_Rep_3 7 498.36370849609375 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 115.21 1 118.85 118.35 119.35 3.6433 0 0 0 0.4029 1 27406 27406 0 0 1 + 49408 31984 30905 30919 56942 56942 0.21787018832628746 VLKLSIEA 8 Unmodified _VLKLSIEA_ 0 0 0 REV__LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|61|3|sense REV__LOR1-int_dup486|chr6:154834251-154835963:+|1.866917780636552|0.4278020281373629|2.13|151.0|61|3|sense MSMS UPN48_class_I_Rep_1 5 436.7750549316406 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 82.729 1 86.316 85.816 86.816 3.5871 0 0 0 0.40604 1 19762 19762 2.5775 0 1 + 49409 30771 30906 30920 56943 56943 0.0969614356264401 VLKLSVTDL 9 Unmodified _VLKLSVTDL_ 0 0 0 ENSG00000163513.19,TGFBR2,chr3,+,I9.1,30681500,30688383|44|10.27|1|intron ENSG00000163513.19,TGFBR2,chr3,+,I9.1,30681500,30688383|44|10.27|1|intron ENSG00000163513.19,TGFBR2,chr3,+,I9.1,30681500,30688383|44|10.27|1|intron MSMS UPN47_class_I_Rep_1 2 494.3073425292969 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 50.658 1 54.287 53.787 54.787 3.6285 0 0 0 0.3967 1 11127 11127 1.4819 0 1 49410 4012 30907 30921 56944 56944 0.10736084279892566 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN46_class_I_Rep_3 1 453.30621337890625 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 111.91 1 111.91 111.41 112.41 0 0 0 0 0.38417 1 27610 27610 0.094841 0 1 + 49411 21046;18108 30908 30922 56945 56945 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN46_class_I_Rep_3 1 453.30548095703125 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 113.84 1 113.84 113.34 114.34 0 0 0 0 0.38417 1 28121 28121 0.094841 0 1 + 49412 21046;18108 30908 30922 56946 56946 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN47_class_I_Rep_2 3 453.3050842285156 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.16 1 120.65 120.15 121.15 3.4891 0 0 0 0.38417 1 28622 28622 0.094841 0 1 + 49413 21046;18108 30908 30922 56947 56947 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN47_class_I_Rep_2 3 453.30511474609375 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 119.64 1 123.12 122.62 123.62 3.4793 0 0 0 0.38417 1 29315 29315 0.094841 0 1 + 49414 21046;18108 30908 30922 56948 56948 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN47_class_I_Rep_3 4 453.3054504394531 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 116.72 1 120.16 119.66 120.66 3.4425 0 0 0 0.38417 1 28732 28732 0.094841 0 1 + 49415 21046;18108 30908 30922 56949 56949 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN47_class_I_Rep_3 4 453.3049621582031 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 117.61 1 121.06 120.56 121.56 3.4425 0 0 0 0.38417 1 28982 28982 0.094841 0 1 + 49416 21046;18108 30908 30922 56950 56950 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN47_class_I_Rep_3 4 453.3052978515625 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 118.75 1 122.17 121.67 122.67 3.4238 0 0 0 0.38417 1 29299 29299 0.094841 0 1 + 49417 21046;18108 30908 30922 56951 56951 0.23275331858371828 VLKLVRLLRFT 11 Unmodified _VLKLVRLLRFT_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS UPN47_class_I_Rep_3 4 453.3053283691406 3 453.306252 1356.89693 NaN NaN NaN NaN NaN NaN NaN 118.96 1 122.38 121.88 122.88 3.4157 0 0 0 0.38417 1 29363 29363 0.094841 0 1 + 49418 21046;18108 30908 30922 56952 56952 0.23275331858371828 VLKMESSNNL 10 Unmodified _VLKMESSNNL_ 0 0 0 REV__ENSG00000008838|ENST00000394128|MED24 REV__ENSG00000008838|ENST00000394128|MED24 MULTI-MSMS UPN47_class_I_Rep_3 4 567.7958984375 2 567.794806 1133.57506 0.43838 0.00024891 0.35277 0.0002003 0.79115 0.00044921 567.795096718566 67.028 0.79185 70.219 69.859 70.651 3.1914 143 60 3 0 0 0 0.53004 1 16112 16112 8.1555 0.24537 1 347390 + 49419 17557 30909 30923 56953 56953 0.013614470461106976 VLKMLKGLK 9 Unmodified _VLKMLKGLK_ 0 0 0 L1MB3_dup3822|chr4:1181486-1182988:+|2.1469700761796418|0.4602798564756437|2.22|151.0|26|2|sense L1MB3_dup3822|chr4:1181486-1182988:+|2.1469700761796418|0.4602798564756437|2.22|151.0|26|2|sense L1MB3_dup3822|chr4:1181486-1182988:+|2.1469700761796418|0.4602798564756437|2.22|151.0|26|2|sense MSMS UPN48_class_I_Rep_2 6 515.7744750976562 2 515.34628 1028.67801 NaN NaN NaN NaN NaN NaN NaN 52.15 1 55.789 55.289 56.289 3.639 0 0 0 0.38299 1 10809 10809 4.756 0 1 49420 10426 30910 30924 56954 56954 0.16481604295381658 VLKNKVFIGL 10 Unmodified _VLKNKVFIGL_ 0 0 0 REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|105|3|anti-sense REV__L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|105|3|anti-sense MSMS UPN46_class_I_Rep_3 1 565.8699951171875 2 565.868434 1129.72232 NaN NaN NaN NaN NaN NaN NaN 104.63 1 104.63 104.13 105.13 0 0 0 0 0.53105 1 25536 25536 1.6526 1.0511 1 + 49421 25172 30911 30925 56955 56955 0.16264331713227875 VLKNLATAY 9 Unmodified _VLKNLATAY_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-SECPEP UPN46_class_I_Rep_3 1 496.2955017089844 2 496.792392 991.570232 0.26963 0.00013395 -1.6848 -0.000837 -1.4152 -0.00070305 496.79225189863996 46.743 0.072136 46.743 46.697 46.769 0 6 4 2 0 0 0 0.12251 1 9594 9594 5.2969 1.3525 1 95070 49422 4463 30912 30926 56956 56956 0.07410930965647822 VLKPILIISA 10 Unmodified _VLKPILIISA_ 0 0 0 REV__L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|36|2|sense REV__L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|36|2|sense MSMS UPN46_class_I_Rep_3 1 533.8666381835938 2 533.86536 1065.71617 NaN NaN NaN NaN NaN NaN NaN 84.858 1 84.858 84.358 85.358 0 0 0 0 0.53105 1 20213 20213 0.40072 0 1 + 49423 30283 30913 30927 56957 56957 0.18593813481720645 VLKPKSQEQKE 11 Unmodified _VLKPKSQEQKE_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|84|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|84|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 438.1334533691406 3 438.585632 1312.73507 -0.073717 -3.2331E-05 -0.14296 -6.2702E-05 -0.21668 -9.5033E-05 438.5855275308422 31.387 0.84487 31.387 31.07 31.915 0 137 62 3 0 0 0 22.551 1 5147 5147 3.0723 1.6171 1 336050 + 49424 24870 30914 30928 56958 56958 0.09120698314814035 VLKPKSQEQKE 11 Unmodified _VLKPKSQEQKE_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|84|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|84|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 438.5853576660156 3 438.585632 1312.73507 -1.0387 -0.00045555 0.73853 0.00032391 -0.30015 -0.00013164 438.5859122614919 27.089 0.53561 30.432 30.247 30.782 3.3422 82 46 2 0 0 0 0.57454 1 4052 4052 5.8681 0 1 62515 + 49425 24870 30914 30928 56959 56959 0.09120698314814035 VLKQANLII 9 Unmodified _VLKQANLII_ 0 0 0 REV__L1PA5_dup106|chr1:50904887-50911009:-|7.349801029516273|0.0650771704694023|6.82|151.0|173|3|sense REV__L1PA5_dup106|chr1:50904887-50911009:-|7.349801029516273|0.0650771704694023|6.82|151.0|173|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 506.331298828125 2 506.331685 1010.64882 0.39795 0.0002015 -0.46691 -0.00023641 -0.068956 -3.4914E-05 506.3313166880582 58.594 0.79122 62.092 61.685 62.476 3.4987 75 46 2 0 0 0 0.26948 2 12813 12764;12813 15.847 0 1 219760 + 49426 29709 30915 30929 56960;56961 56961 0.14391783270752967 VLKRKKNYK 9 Unmodified _VLKRKKNYK_ 0 0 0 L1MA5A_dup12|chr1:28443754-28444214:-|1.142323167314287|0.0079694595447976|7.16|151.0|4|1|sense;L1MC1_dup11438|chr16:20836051-20837088:-|1.2785458831080994|0.0722566516099211|4.15|149.0|7|1|sense L1MA5A_dup12|chr1:28443754-28444214:-|1.142323167314287|0.0079694595447976|7.16|151.0|4|1|sense L1MA5A_dup12|chr1:28443754-28444214:-|1.142323167314287|0.0079694595447976|7.16|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 588.8846435546875 2 588.882407 1175.75026 NaN NaN NaN NaN NaN NaN NaN 59.195 1 59.195 58.695 59.695 0 0 0 0 0.4007 1 13071 13071 0.52476 0 1 49427 9930 30916 30930 56962 56962 0.16941654693300734 VLKRKPVLS 9 Unmodified _VLKRKPVLS_ 0 0 0 ENST00000262376.10_1_16:4930962-4931145:+|nuORF ENST00000262376.10_1_16:4930962-4931145:+|nuORF ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 520.3532104492188 2 520.352951 1038.69135 0.41003 0.00021336 -0.43585 -0.00022679 -0.025822 -1.3436E-05 520.3526473799203 108.72 0.23738 112.35 112.33 112.57 3.6355 24 20 2 0 0 0 0.48643 2 26751 26751;26759 2.0598 0 1 4246700 49428 5966 30917 30931 56963;56964 56963 0.17355178398975113 VLKRKPVLS 9 Unmodified _VLKRKPVLS_ 0 0 0 ENST00000262376.10_1_16:4930962-4931145:+|nuORF ENST00000262376.10_1_16:4930962-4931145:+|nuORF ENST00000262376.10_1_16:4930962-4931145:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 520.352783203125 2 520.352951 1038.69135 0.36797 0.00019148 -0.30237 -0.00015734 0.065604 3.4137E-05 520.3526369252817 108.75 0.34618 112.42 112.29 112.64 3.6746 59 33 2 0 0 0 0.48643 1 25815 25815 2.0598 0 1 5963800 49429 5966 30917 30931 56965 56965 0.17355178398975113 VLKRYSLL 8 Unmodified _VLKRYSLL_ 0 0 0 REV__ENST00000532161.5_2_11:102322944-102323061:-|nuORF REV__ENST00000532161.5_2_11:102322944-102323061:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 496.3193054199219 2 496.318577 990.622602 0.18631 9.2471E-05 -0.027636 -1.3716E-05 0.15868 7.8755E-05 496.3184653352489 43.591 0.72828 47.102 46.711 47.439 3.5103 90 60 2 0 0 0 0.82752 1 8278 8278 4.756 0 1 157900 + 49430 22863 30918 30932 56966 56966 0.12691514099276446 VLKSGRRG 8 Unmodified _VLKSGRRG_ 0 0 0 MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 436.774658203125 2 436.774868 871.535184 0.15096 6.5938E-05 -0.34812 -0.00015205 -0.19716 -8.6114E-05 436.7746568183267 85.853 0.22047 85.853 85.8 86.02 0 45 23 2 0 0 0 0.82752 1 20536 20536 0.79363 0 1 613710 49431 16349 30919 30933 56967 56967 0.09427732948370249 VLKSGRRG 8 Unmodified _VLKSGRRG_ 0 0 0 MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 436.774868 871.535184 -0.26001 -0.00011357 0.17344 7.5755E-05 -0.086566 -3.781E-05 436.7748630735639 82.744 0.18202 86.143 86.055 86.237 3.3984 0.21524 0.00027292 NaN 0.79363 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 222250 49432 16349 30919 30933 0.09427732948370249 VLKSGRRG 8 Unmodified _VLKSGRRG_ 0 0 0 MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MLT1D_dup20460|chr22:37763745-37764270:-|1.3341491210492176|0.41925239462323|1.67|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 436.774868 871.535184 -0.026805 -1.1708E-05 -0.0073444 -3.2079E-06 -0.034149 -1.4915E-05 436.7747475481761 82.212 0.10828 85.787 85.738 85.846 3.5753 -0.14061 0.000115 NaN 0.79363 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 412270 49433 16349 30919 30933 0.09427732948370249 VLKSHNSLY 9 Unmodified _VLKSHNSLY_ 0 0 0 L1PB4_dup2245|chr5:70812372-70812707:+|1.3671898684335355|0.2396379187030106|2.51|149.0|2|1|sense L1PB4_dup2245|chr5:70812372-70812707:+|1.3671898684335355|0.2396379187030106|2.51|149.0|2|1|sense L1PB4_dup2245|chr5:70812372-70812707:+|1.3671898684335355|0.2396379187030106|2.51|149.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 530.79296875 2 530.792924 1059.57129 0.40931 0.00021726 -0.21959 -0.00011656 0.18973 0.0001007 530.7927543109329 38.622 1.0677 42.282 41.936 43.003 3.6595 216 98 3 0 0 0 0.42249 2 6853 6845;6853 6.7232 3.1267 1 694570 49434 15296 30920 30934 56968;56969 56969 0.04389145334562272 VLKTEKKL 8 Unmodified _VLKTEKKL_ 0 0 0 REV__ENSG00000187527|ENST00000342358|ATP13A5 REV__ENSG00000187527|ENST00000342358|ATP13A5 MULTI-MSMS UPN47_class_I_Rep_3 4 479.81787109375 2 479.81841 957.622267 -0.48855 -0.00023442 0.12897 6.1884E-05 -0.35958 -0.00017253 479.818407617877 34.034 0.59364 37.309 36.911 37.504 3.2748 76 40 2 0 0 0 0.82752 1 6054 6054 7.9102 0 1 97426 + 49435 20930 30921 30935 56970 56970 0.14176094379422466 VLKTIRII 8 Unmodified _VLKTIRII_ 0 0 0 REV__L1ME3E_dup2835|chrX:154681964-154682600:-|2.526214040447069|0.1688446309338445|3.9|151.0|27|3|sense REV__L1ME3E_dup2835|chrX:154681964-154682600:-|2.526214040447069|0.1688446309338445|3.9|151.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 478.335693359375 2 478.33677 954.658987 NaN NaN NaN NaN NaN NaN NaN 72.126 1 72.126 71.626 72.626 0 0 0 0 0.40625 1 16655 16655 2.3027 0 1 + 49436 28159 30922 30936 56971 56971 0.17984390995979993 VLKVLARA 8 Unmodified _VLKVLARA_ 0 0 0 L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense;L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|125|3|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|50|1|sense;L1PA3_dup3758|chr5:126903811-126909817:-|2.2961703146061354|0.3300810679247131|2.8|151.0|29|1|sense;L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|9|1|sense;L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|5|1|sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|163|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|43|1|sense;L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|39|2|sense;L1PA3_dup9826|chr16:47555730-47557030:-|1.1789159899993775|0.0498538236812734|4.56|151.0|2|1|sense;L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|158|3|sense;L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|41|1|sense;L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|108|2|sense;L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|44|1|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|168|3|sense;L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|166|3|sense;L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|6|1|sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|56|2|sense;L1MA2_dup336|chr1:176124121-176126451:-|2.721335125696108|0.0896175319511121|4.92|151.0|58|3|sense;L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|144|2|sense;L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|71|3|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|161|3|sense;L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|11|1|sense;L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|9|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|67|3|sense;L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|70|3|sense;L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|22|1|sense;L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|6|1|sense;L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|58|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|155|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 435.29998779296875 2 435.300188 868.585822 -0.013073 -5.6908E-06 -0.34785 -0.00015142 -0.36092 -0.00015711 435.30002171749044 67.691 0.45087 71.052 70.852 71.303 3.3611 45 31 2 0 0 0 0.82752 1 16270 16270 0.69038 0 1 49139 49437 9048 30923 30937 56972 56972 0.14627262273347696 VLKVLARA 8 Unmodified _VLKVLARA_ 0 0 0 L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense;L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|125|3|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|50|1|sense;L1PA3_dup3758|chr5:126903811-126909817:-|2.2961703146061354|0.3300810679247131|2.8|151.0|29|1|sense;L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|9|1|sense;L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|5|1|sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|163|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|43|1|sense;L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|39|2|sense;L1PA3_dup9826|chr16:47555730-47557030:-|1.1789159899993775|0.0498538236812734|4.56|151.0|2|1|sense;L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|158|3|sense;L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|41|1|sense;L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|108|2|sense;L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|44|1|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|168|3|sense;L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|166|3|sense;L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|6|1|sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|56|2|sense;L1MA2_dup336|chr1:176124121-176126451:-|2.721335125696108|0.0896175319511121|4.92|151.0|58|3|sense;L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|144|2|sense;L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|71|3|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|161|3|sense;L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|11|1|sense;L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|9|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|67|3|sense;L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|70|3|sense;L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|22|1|sense;L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|6|1|sense;L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|58|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|155|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense MSMS UPN47_class_I_Rep_1 2 435.3000183105469 2 435.300188 868.585822 NaN NaN NaN NaN NaN NaN NaN 64.538 1 67.894 67.394 68.394 3.3557 0 0 0 0.40746 1 15339 15339 0.69038 0 1 49438 9048 30923 30937 56973 56973 0.14627262273347696 VLKVLARA 8 Unmodified _VLKVLARA_ 0 0 0 L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense;L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|125|3|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|50|1|sense;L1PA3_dup3758|chr5:126903811-126909817:-|2.2961703146061354|0.3300810679247131|2.8|151.0|29|1|sense;L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|9|1|sense;L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|5|1|sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|163|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|43|1|sense;L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|39|2|sense;L1PA3_dup9826|chr16:47555730-47557030:-|1.1789159899993775|0.0498538236812734|4.56|151.0|2|1|sense;L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|158|3|sense;L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|41|1|sense;L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|108|2|sense;L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|44|1|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|168|3|sense;L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|166|3|sense;L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|6|1|sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|56|2|sense;L1MA2_dup336|chr1:176124121-176126451:-|2.721335125696108|0.0896175319511121|4.92|151.0|58|3|sense;L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|144|2|sense;L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|71|3|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|161|3|sense;L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|11|1|sense;L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|9|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|67|3|sense;L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|70|3|sense;L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|22|1|sense;L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|6|1|sense;L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|58|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|155|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 435.3003845214844 2 435.300188 868.585822 0.028612 1.2455E-05 -0.083714 -3.6441E-05 -0.055102 -2.3986E-05 435.30022456526314 66.41 0.14494 69.862 69.792 69.937 3.4516 13 8 2 0 0 0 0.82752 1 15195 15195 0.69038 0 1 113120 49439 9048 30923 30937 56974 56974 0.14627262273347696 VLKVLARA 8 Unmodified _VLKVLARA_ 0 0 0 L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense;L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|125|3|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|50|1|sense;L1PA3_dup3758|chr5:126903811-126909817:-|2.2961703146061354|0.3300810679247131|2.8|151.0|29|1|sense;L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|9|1|sense;L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|5|1|sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|163|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|43|1|sense;L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|39|2|sense;L1PA3_dup9826|chr16:47555730-47557030:-|1.1789159899993775|0.0498538236812734|4.56|151.0|2|1|sense;L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|158|3|sense;L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|41|1|sense;L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|108|2|sense;L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|44|1|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|168|3|sense;L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|166|3|sense;L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|6|1|sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|56|2|sense;L1MA2_dup336|chr1:176124121-176126451:-|2.721335125696108|0.0896175319511121|4.92|151.0|58|3|sense;L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|144|2|sense;L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|71|3|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|161|3|sense;L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|11|1|sense;L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|9|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|67|3|sense;L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|70|3|sense;L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|22|1|sense;L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|6|1|sense;L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|58|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|155|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.300188 868.585822 -0.42225 -0.0001838 0.20063 8.7335E-05 -0.22161 -9.6469E-05 435.3001878379801 67.618 0.22458 70.881 70.813 71.038 3.2636 -0.085139 0.00030355 NaN 0.69038 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 31898 49440 9048 30923 30937 0.14627262273347696 VLKVLARA 8 Unmodified _VLKVLARA_ 0 0 0 L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense;L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|125|3|sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|50|1|sense;L1PA3_dup3758|chr5:126903811-126909817:-|2.2961703146061354|0.3300810679247131|2.8|151.0|29|1|sense;L1PB1_dup5955|chr7:102801946-102805686:+|1.9736080063333308|0.3752813437471502|2.39|151.0|9|1|sense;L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|5|1|sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|163|3|sense;L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|43|1|sense;L1PB1_dup1377|chr2:135286579-135288873:-|2.7537518032484725|0.0352076137373061|6.29|151.0|39|2|sense;L1PA3_dup9826|chr16:47555730-47557030:-|1.1789159899993775|0.0498538236812734|4.56|151.0|2|1|sense;L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|158|3|sense;L1PA6_dup3259|chr9:85717680-85723818:-|11.402402858605669|0.0848352228930945|7.07|151.0|41|1|sense;L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|108|2|sense;L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|44|1|sense;L1PA7_dup3078|chr4:48279613-48285355:+|5.2619079462765|0.145951147307828|5.17|151.0|168|3|sense;L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|166|3|sense;L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|6|1|sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|56|2|sense;L1MA2_dup336|chr1:176124121-176126451:-|2.721335125696108|0.0896175319511121|4.92|151.0|58|3|sense;L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|144|2|sense;L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|71|3|sense;L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|161|3|sense;L1PA10_dup1040|chr3:17489488-17492441:-|4.060632115701|0.0959699899078409|5.4|151.0|11|1|sense;L1PA17_dup4380|chr18:62931900-62934714:+|3.954144255455726|0.0342853861237999|6.85|151.0|9|1|sense;L1MA3_dup379|chr1:174483834-174486351:-|3.0659936064918187|0.0535939115152595|5.84|151.0|67|3|sense;L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|70|3|sense;L1MA5A_dup3253|chr19:51228820-51230782:-|1.2476151944997067|0.0180012068212344|6.11|150.0|22|1|sense;L1MA9_dup5337|chr5:137914467-137915209:-|1.003295981652958|0.0151616625554499|6.05|151.0|6|1|sense;L1MA7_dup1027|chr2:186019746-186023331:-|1.2791119483893678|0.1562999196931998|3.03|151.0|58|2|sense;L1PA3_dup9764|chr16:12070184-12076303:-|1.9205025035800107|0.0498845036027191|5.27|151.0|155|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense L1PB1_dup4917|chr6:45291077-45296185:+|2.7437466359585945|0.0321461270693336|6.42|151.0|129|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.300188 868.585822 -0.4107 -0.00017878 1.0413 0.00045327 0.63058 0.00027449 435.30052201683304 66.425 0.16418 69.611 69.534 69.698 3.1853 -0.12734 0.00067047 NaN 0.69038 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 55049 49441 9048 30923 30937 0.14627262273347696 VLKVLFQRHE 10 Unmodified _VLKVLFQRHE_ 0 0 0 ENST00000467342.1_1_3:112807559-112807781:+|nuORF ENST00000467342.1_1_3:112807559-112807781:+|nuORF ENST00000467342.1_1_3:112807559-112807781:+|nuORF MSMS UPN47_class_I_Rep_1 2 634.8779907226562 2 634.877322 1267.74009 NaN NaN NaN NaN NaN NaN NaN 106.63 1 110.34 109.84 110.84 3.7088 0 0 0 0.53105 1 26135 26135 1.4819 0.15237 1 49442 6906 30924 30938 56975 56975 0.1169304696807103 VLKVPYHPR 9 Unmodified _VLKVPYHPR_ 0 0 0 HERV9NC-int_dup224|chr13:100282631-100285957:+|1.2691982649622062|0.0765401774832832|4.05|144.0|63|3|sense HERV9NC-int_dup224|chr13:100282631-100285957:+|1.2691982649622062|0.0765401774832832|4.05|144.0|63|3|sense HERV9NC-int_dup224|chr13:100282631-100285957:+|1.2691982649622062|0.0765401774832832|4.05|144.0|63|3|sense MSMS UPN47_class_I_Rep_1 2 555.2991943359375 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 63.247 1 66.606 66.106 67.106 3.3595 0 0 0 0.4007 1 14952 14952 0.52476 0 1 49443 8099 30925 30939 56976 56976 0.1057772122210281 VLKYIKLKI 9 Unmodified _VLKYIKLKI_ 0 0 0 L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|47|3|sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|47|3|sense L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|47|3|sense MSMS UPN46_class_I_Rep_3 1 559.7640380859375 2 559.389003 1116.76345 NaN NaN NaN NaN NaN NaN NaN 116.01 1 116.01 115.51 116.51 0 0 0 0 0.4029 1 28704 28704 0 0 1 49444 11525 30926 30940 56977 56977 0.20974092752680917 VLKYQSDISKI 11 Unmodified _VLKYQSDISKI_ 0 0 0 L1MCa_dup2910|chr6:155929410-155930260:-|1.035540960623555|0.0020679962101026|8.97|144.0|41|1|anti-sense L1MCa_dup2910|chr6:155929410-155930260:-|1.035540960623555|0.0020679962101026|8.97|144.0|41|1|anti-sense L1MCa_dup2910|chr6:155929410-155930260:-|1.035540960623555|0.0020679962101026|8.97|144.0|41|1|anti-sense MSMS UPN48_class_I_Rep_1 5 647.2770385742188 2 647.374278 1292.734 NaN NaN NaN NaN NaN NaN NaN 77.431 1 80.953 80.453 81.453 3.5221 0 0 0 0.38417 1 18427 18427 4.897 0 1 49445 11788 30927 30941 56978 56978 0.09934483945880856 VLLAQAVLPP 10 Unmodified _VLLAQAVLPP_ 0 0 0 AluJr_dup37349|chr8:55925125-55925418:-|1.5942456098099191|0.0108882969094001|7.19|151.0|17|2|anti-sense AluJr_dup37349|chr8:55925125-55925418:-|1.5942456098099191|0.0108882969094001|7.19|151.0|17|2|anti-sense AluJr_dup37349|chr8:55925125-55925418:-|1.5942456098099191|0.0108882969094001|7.19|151.0|17|2|anti-sense MSMS UPN47_class_I_Rep_1 2 510.8445129394531 2 510.826235 1019.63792 NaN NaN NaN NaN NaN NaN NaN 71.095 1 74.47 73.97 74.97 3.3751 0 0 0 0.53105 1 17314 17314 15.847 3.3156 1 49446 149 30928 30942 56979 56979 0.12888380896470153 VLLCCPGWSM 10 Unmodified _VLLCCPGWSM_ 0 0 0 AluSz6_dup11060|chr4:39705195-39705498:-|1.3761816451370812|0.0131639941729841|6.71|151.0|19|3|anti-sense AluSz6_dup11060|chr4:39705195-39705498:-|1.3761816451370812|0.0131639941729841|6.71|151.0|19|3|anti-sense AluSz6_dup11060|chr4:39705195-39705498:-|1.3761816451370812|0.0131639941729841|6.71|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.7538452148438 2 554.753041 1107.49153 NaN NaN NaN NaN NaN NaN NaN 26.644 1 29.992 29.492 30.492 3.3478 0 0 0 0.53105 1 3929 3929 1.6526 0 1 49447 376 30929 30943 56980 56980 -0.057917039269568704 VLLCLAWL 8 Unmodified _VLLCLAWL_ 0 0 0 L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|39|1|anti-sense L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|39|1|anti-sense L1MA4A_dup3298|chr9:88402288-88403288:-|1.6600831062819457|0.0542379496308832|4.94|150.0|39|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 465.7779846191406 2 465.777699 929.540846 0.0059894 2.7897E-06 -0.39967 -0.00018616 -0.39368 -0.00018337 465.7774230902794 73.041 1.6981 76.338 75.542 77.24 3.2971 202 148 2 0 0 0 0.82752 1 18120 18120 0.79363 0 1 165930 49448 9785 30930 30944 56981 56981 0.07325695415806877 VLLCLPFGL 9 Unmodified _VLLCLPFGL_ 0 0 0 REV__ENSG00000136536.15,MARCHF7,chr2,+,I5.1,159734083,159743060|23|9.08|1|intron REV__ENSG00000136536.15,MARCHF7,chr2,+,I5.1,159734083,159743060|23|9.08|1|intron MSMS UPN47_class_I_Rep_3 4 487.7909851074219 2 487.790807 973.56706 NaN NaN NaN NaN NaN NaN NaN 86.923 1 90.303 89.803 90.803 3.3801 0 0 0 0.40038 1 21782 21782 0.6015 0 1 + 49449 19189 30931 30945 56982 56982 0.07921964587308139 VLLCWWWWWWC 11 Unmodified _VLLCWWWWWWC_ 0 0 0 REV__L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|40|2|anti-sense REV__L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|40|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2515869140625 3 556.254394 1665.74135 -0.059703 -3.321E-05 -3.6034 -0.0020044 -3.6631 -0.0020376 556.2524238349705 25.925 0.097658 29.687 29.637 29.735 3.7624 9 8 2 0 0 0 0.68478 1 3624 3624 0.094841 0.094841 1 59009 + 49450 27701 30932 30946 56983 56983 -0.06488778259040373 VLLCWWWWWWC 11 Unmodified _VLLCWWWWWWC_ 0 0 0 REV__L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|40|2|anti-sense REV__L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|40|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 556.254394 1665.74135 0.046734 2.5996E-05 -3.976 -0.0022117 -3.9293 -0.0021857 556.5863944362856 26.284 0.081203 29.779 29.734 29.815 3.4945 0.047125 -0.00056313 NaN 0.094841 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 28044 + 49451 27701 30932 30946 -0.06488778259040373 VLLCWWWWWWC 11 Unmodified _VLLCWWWWWWC_ 0 0 0 REV__L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|40|2|anti-sense REV__L1ME1_dup2536|chr1:246277217-246278004:+|3.5155798567586576|0.0248974299295758|7.14|151.0|40|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 556.254394 1665.74135 -0.24217 -0.00013471 -3.5606 -0.0019806 -3.8027 -0.0021153 556.2523170606206 26.381 0.092968 29.729 29.679 29.772 3.3478 -0.0029916 0.0001302 NaN 0.094841 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 44085 + 49452 27701 30932 30946 -0.06488778259040373 VLLDAPIQL 9 Unmodified _VLLDAPIQL_ 0 0 0 ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3 ENST00000485921.5_1_3:183903968-183904686:+|nuORF ENST00000485921.5_1_3:183903968-183904686:+|nuORF MSMS UPN47_class_I_Rep_1 2 491.3026123046875 2 491.302593 980.590633 NaN NaN NaN NaN NaN NaN NaN 81.279 1 84.766 84.266 85.266 3.4874 0 0 0 0.32573 1 20279 20279 9.3831 0 1 49453 3899 30933 30947 56984 56984 0.09956101625471092 VLLDAPIQL 9 Unmodified _VLLDAPIQL_ 0 0 0 ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3 ENST00000485921.5_1_3:183903968-183904686:+|nuORF ENST00000485921.5_1_3:183903968-183904686:+|nuORF MSMS UPN47_class_I_Rep_2 3 491.30352783203125 2 491.302593 980.590633 NaN NaN NaN NaN NaN NaN NaN 81.083 1 84.467 83.967 84.967 3.3839 0 0 0 0.32573 1 20193 20193 9.3831 0 1 49454 3899 30933 30947 56985 56985 0.09956101625471092 VLLDAPIQL 9 Unmodified _VLLDAPIQL_ 0 0 0 ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3 ENST00000485921.5_1_3:183903968-183904686:+|nuORF ENST00000485921.5_1_3:183903968-183904686:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 491.30328369140625 2 491.302593 980.590633 0.23397 0.00011495 0.021968 1.0793E-05 0.25594 0.00012574 491.3025846499237 81.209 0.57343 84.532 84.26 84.833 3.3231 100 67 2 0 0 0 0.37599 1 20308 20308 9.3831 0 1 149620 49455 3899 30933 30947 56986 56986 0.09956101625471092 VLLDATLRI 9 Unmodified _VLLDATLRI_ 0 0 0 REV__L1PA5_dup8571|chr12:4341375-4346760:+|2.412041877871084|0.2878433768439809|3.07|151.0|110|3|sense REV__L1PA5_dup8571|chr12:4341375-4346760:+|2.412041877871084|0.2878433768439809|3.07|151.0|110|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.32110595703125 2 507.321317 1012.62808 0.35753 0.00018138 -0.14658 -7.4363E-05 0.21095 0.00010702 507.3211719872673 59.261 0.45743 62.741 62.513 62.97 3.4801 46 26 2 0 0 0 0.31407 1 12995 12995 13.042 0 1 161830 + 49456 29808 30934 30948 56987 56987 0.1222719289107772 VLLDGLVTSL 10 Unmodified _VLLDGLVTSL_ 0 0 0 REV__L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|210|3|anti-sense REV__L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|210|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 515.3180541992188 2 515.313158 1028.61176 0.26431 0.0001362 1.5856 0.00081709 1.8499 0.00095329 515.3147706580546 62.983 1.0423 66.343 65.752 66.794 3.3595 111 73 3 0 0 0 0.48573 1 14727 14727 13.042 0 1 280920 + 49457 30180 30935 30949 56988 56988 0.09860066934356837 VLLDGLVTSL 10 Unmodified _VLLDGLVTSL_ 0 0 0 REV__L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|210|3|anti-sense REV__L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|210|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 515.313158 1028.61176 0.068892 3.5501E-05 -0.7182 -0.0003701 -0.6493 -0.0003346 515.3125932446432 63.353 0.50988 66.608 66.362 66.872 3.2558 0.11292 0.00011566 NaN 13.042 66 37 2 NaN NaN NaN NaN 0 NaN NaN 0 172470 + 49458 30180 30935 30949 0.09860066934356837 VLLDGLVTSL 10 Unmodified _VLLDGLVTSL_ 0 0 0 REV__L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|210|3|anti-sense REV__L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|210|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 515.313158 1028.61176 0.25753 0.00013271 -1.123 -0.00057869 -0.86547 -0.00044599 515.3123913600878 63.366 0.50538 66.535 66.308 66.814 3.1698 0.039788 -0.00030153 NaN 13.042 72 39 3 NaN NaN NaN NaN 0 NaN NaN 0 280840 + 49459 30180 30935 30949 0.09860066934356837 VLLDIFLKSVF 11 Unmodified _VLLDIFLKSVF_ 0 0 0 L1PA7_dup10432|chr12:65397611-65404068:-|9.111015752138362|0.1052954061541697|6.44|151.0|228|1|anti-sense L1PA7_dup10432|chr12:65397611-65404068:-|9.111015752138362|0.1052954061541697|6.44|151.0|228|1|anti-sense L1PA7_dup10432|chr12:65397611-65404068:-|9.111015752138362|0.1052954061541697|6.44|151.0|228|1|anti-sense MSMS UPN47_class_I_Rep_3 4 647.39453125 2 647.394482 1292.77441 NaN NaN NaN NaN NaN NaN NaN 102.5 1 105.98 105.48 106.48 3.4873 0 0 0 0.38417 1 25194 25194 4.897 1.6157 1 49460 14704 30936 30950 56989 56989 0.13973450336288806 VLLEEEQY 8 Unmodified _VLLEEEQY_ 0 0 0 REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 511.3459777832031 2 511.755672 1021.49679 0.23357 0.00011953 -0.048844 -2.4996E-05 0.18473 9.4534E-05 511.7556613486172 72.677 0.18878 76.057 75.902 76.091 3.3799 20 15 2 0 0 0 0.72333 1 17752 17752 6.3541 0 1 63264 + 49461 22659 30937 30951 56990 56990 -0.013096622674765968 VLLEEEQY 8 Unmodified _VLLEEEQY_ 0 0 0 REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 511.755672 1021.49679 0.27829 0.00014242 -0.027271 -1.3956E-05 0.25102 0.00012846 511.75570325084516 72.956 0.32091 76.183 76.092 76.413 3.2271 0.063161 6.2743E-06 NaN 6.3541 35 28 2 NaN NaN NaN NaN 0 NaN NaN 0 65787 + 49462 22659 30937 30951 -0.013096622674765968 VLLEKDLI 8 Unmodified _VLLEKDLI_ 0 0 0 ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L ENSG00000145087|ENST00000471454|STXBP5L ENSG00000145087|ENST00000471454|STXBP5L MSMS UPN47_class_I_Rep_1 2 471.7958068847656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 74.798 1 78.192 77.692 78.692 3.3937 0 0 0 0.40604 1 18428 18428 2.5775 0 1 49463 3382 30938 30952 56991 56991 0.10660699251184269 VLLEKVRS 8 Unmodified _VLLEKVRS_ 0 0 0 REV__nc|ENSG00000182541|P53671-3|LIMK2 REV__nc|ENSG00000182541|P53671-3|LIMK2 MSMS UPN47_class_I_Rep_1 2 472.28741455078125 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 87.384 1 91.022 90.522 91.522 3.6372 0 0 0 0.40746 1 21836 21836 0.69038 0 1 + 49464 32079 30939 30953 56992 56992 0.11262637202571568 VLLELDMPSR 10 Unmodified _VLLELDMPSR_ 0 0 0 nc|ENSG00000101350|O15066-2|KIF3B;ENSG00000101350|ENST00000375712|KIF3B nc|ENSG00000101350|O15066-2|KIF3B nc|ENSG00000101350|O15066-2|KIF3B MSMS UPN47_class_I_Rep_1 2 586.820556640625 2 586.820824 1171.62709 NaN NaN NaN NaN NaN NaN NaN 99.295 1 103.09 102.59 103.59 3.7926 0 0 0 0.53105 1 24560 24560 1.6526 0 1 49465 1566 30940 30954 56993 56993 0.048146104598799866 VLLELPLLL 9 Unmodified _VLLELPLLL_ 0 0 0 ENSG00000167850|ENST00000330793|CD300C ENSG00000167850|ENST00000330793|CD300C ENSG00000167850|ENST00000330793|CD300C MULTI-MSMS UPN47_class_I_Rep_1 2 511.8463134765625 2 511.846636 1021.67872 0.36383 0.00018622 -0.43925 -0.00022483 -0.075422 -3.8604E-05 511.84604571222366 107.26 0.11653 110.93 110.88 111 3.6724 14 9 2 0 0 0 0.13631 1 26280 26280 26.884 0 1 1540400 49466 4333 30941 30955 56994 56994 0.1687472221610733 VLLELPLLL 9 Unmodified _VLLELPLLL_ 0 0 0 ENSG00000167850|ENST00000330793|CD300C ENSG00000167850|ENST00000330793|CD300C ENSG00000167850|ENST00000330793|CD300C MULTI-SECPEP UPN47_class_I_Rep_3 4 511.64990234375 2 511.846636 1021.67872 0.33057 0.0001692 -1.019 -0.00052159 -0.68846 -0.00035238 511.84640358780797 107.29 0.091743 110.83 110.77 110.86 3.5382 15 11 2 0 0 0 0.060395 1 26188 26188 32.305 0 1 1213700 49467 4333 30941 30955 56995 56995 0.1687472221610733 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MSMS UPN46_class_I_Rep_3 1 539.2952270507812 2 539.294965 1076.57538 NaN NaN NaN NaN NaN NaN NaN 79.122 1 79.122 78.622 79.622 0 0 0 0 0.27207 1 18571 18571 12.241 2.8575 1 49468 3167 30942 30956 56996 56996 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.2957153320312 2 539.294965 1076.57538 0.39634 0.00021374 0.69085 0.00037257 1.0872 0.00058632 539.2952137298616 74.171 0.82392 77.565 77.294 78.117 3.3937 168 76 3 0 0 0 0.0052487 5 18276 18199;18237;18276;18310;18345 96.111 24.189 1 404730 49469 3167 30942 30956 56997;56998;56999;57000;57001 56999 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.2952880859375 2 539.294965 1076.57538 0.3992 0.00021529 0.32505 0.0001753 0.72425 0.00039059 539.2951303610466 74.771 0.14861 78.164 78.109 78.258 3.3937 18 13 2 0 0 0 0.21414 1 18419 18419 19.362 6.3195 1 63886 49470 3167 30942 30956 57002 57002 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 539.2947998046875 2 539.294965 1076.57538 0.40092 0.00021621 0.41604 0.00022437 0.81696 0.00044058 539.2950424525037 74.328 0.82524 77.633 77.366 78.192 3.3048 185 89 3 0 0 0 0.0070866 5 18302 18268;18302;18337;18371;18405 96.111 24.189 1 470200 49471 3167 30942 30956 57003;57004;57005;57006;57007 57004 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 539.2951049804688 2 539.294965 1076.57538 0.43642 0.00023536 0.35155 0.00018959 0.78797 0.00042495 539.2949894497398 74.421 0.75994 77.667 77.403 78.163 3.2464 184 80 3 0 0 0 0.0074206 5 18397 18362;18397;18436;18471;18511 107.19 25.297 1 428400 49472 3167 30942 30956 57008;57009;57010;57011;57012 57009 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MSMS UPN47_class_I_Rep_3 4 539.2953491210938 2 539.294965 1076.57538 NaN NaN NaN NaN NaN NaN NaN 74.96 1 78.207 77.707 78.707 3.2464 0 0 0 0.18866 1 18574 18574 17.113 3.2068 1 49473 3167 30942 30956 57013 57013 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENST00000558527.5_1_15:40329525-40331317:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 539.294965 1076.57538 0.40551 0.00021869 0.46721 0.00025196 0.87272 0.00047065 539.2952790936635 74.992 0.0644 78.305 78.247 78.311 3.3127 0.070285 7.8951E-05 NaN 19.362 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 39649 49474 3167 30942 30956 0.04015190037625871 VLLFGFVY 8 Unmodified _VLLFGFVY_ 0 0 0 L1M5_dup34425|chr10:45432417-45432883:+|1.1697334675244313|0.2817970776533794|2.05|151.0|24|2|anti-sense L1M5_dup34425|chr10:45432417-45432883:+|1.1697334675244313|0.2817970776533794|2.05|151.0|24|2|anti-sense L1M5_dup34425|chr10:45432417-45432883:+|1.1697334675244313|0.2817970776533794|2.05|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 479.2778015136719 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 74.025 1 77.411 76.911 77.911 3.3861 0 0 0 0.40738 1 18202 18202 0.79363 0 1 49475 9145 30943 30957 57014 57014 0.05713348913616301 VLLFKIVKR 9 Unmodified _VLLFKIVKR_ 0 0 0 L1MB3_dup16860|chr21:42983122-42984051:-|2.02345950025798|0.2385649080380745|3.08|151.0|18|2|sense L1MB3_dup16860|chr21:42983122-42984051:-|2.02345950025798|0.2385649080380745|3.08|151.0|18|2|sense L1MB3_dup16860|chr21:42983122-42984051:-|2.02345950025798|0.2385649080380745|3.08|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 558.3847045898438 2 558.386794 1114.75904 NaN NaN NaN NaN NaN NaN NaN 118.78 1 122.45 121.95 122.95 3.6652 0 0 0 0.40038 1 28489 28489 0.6015 0 1 49476 10371 30944 30958 57015 57015 0.20624628329778716 VLLFLLLFSSR 11 Unmodified _VLLFLLLFSSR_ 0 0 0 REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|174|1|anti-sense REV__L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|174|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 436.6080017089844 3 436.607708 1306.80129 0.11015 4.8092E-05 -0.11491 -5.0172E-05 -0.0047636 -2.0798E-06 436.60796682939235 60.183 0.80877 63.657 63.25 64.059 3.4737 108 59 3 0 0 0 0.6724 1 13385 13385 1.2148 0 1 257620 + 49477 24861 30945 30959 57016 57016 0.1601655894751275 VLLFLQPGS 9 Unmodified _VLLFLQPGS_ 0 0 0 REV__L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|249|2|anti-sense REV__L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|249|2|anti-sense MSMS UPN48_class_I_Rep_3 7 487.2912902832031 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 55.461 1 59.016 58.516 59.516 3.5554 0 0 0 0.39428 1 11759 11759 2.0598 0.21551 1 + 49478 30644 30946 30960 57017 57017 0.07703832454012627 VLLFLSCSC 9 Unmodified _VLLFLSCSC_ 0 0 0 REV__MER102a_dup37|chr1:30755725-30756015:+|1.1888607551595962|0.0260236654109955|5.51|151.0|10|1|anti-sense REV__MER102a_dup37|chr1:30755725-30756015:+|1.1888607551595962|0.0260236654109955|5.51|151.0|10|1|anti-sense MSMS UPN47_class_I_Rep_2 3 492.74945068359375 2 492.748282 983.48201 NaN NaN NaN NaN NaN NaN NaN 33.569 1 37.009 36.509 37.509 3.4398 0 0 0 0.38299 1 5963 5963 4.756 0 1 + 49479 31061 30947 30961 57018 57018 -0.01039148940810719 VLLFTYARLVL 11 Unmodified _VLLFTYARLVL_ 0 0 0 L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|64|1|anti-sense L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|64|1|anti-sense L1ME3B_dup3071|chr6:110450730-110452014:-|1.186035218532583|0.0064061167612597|7.53|150.0|64|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 436.60791015625 3 436.607708 1306.80129 0.11735 5.1236E-05 -0.085774 -3.745E-05 0.031577 1.3787E-05 436.6078856735564 59.897 0.47898 63.414 63.028 63.507 3.5169 76 38 3 0 0 0 0.68024 1 13091 13091 0.50596 0 1 174540 49480 12709 30948 30962 57019 57019 0.16016558947490012 VLLGASLYAI 10 Unmodified _VLLGASLYAI_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MSMS UPN47_class_I_Rep_2 3 510.3103942871094 2 510.310418 1018.60628 0.11499 5.868E-05 0.16658 8.5007E-05 0.28157 0.00014369 510.31035919602516 71.817 0.91801 75.107 74.723 75.641 3.2899 198 79 3 0 0 0 0.32062 2 17638 17638;17681 26.884 0.61551 1 634560 49481 1945 30949 30963 57020;57021 57020 0.09772388142516775 VLLGASLYAI 10 Unmodified _VLLGASLYAI_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MSMS UPN47_class_I_Rep_3 4 510.3103942871094 2 510.310418 1018.60628 0.27196 0.00013878 -0.0049496 -2.5258E-06 0.26701 0.00013626 510.3103072485198 71.926 1.119 75.145 74.678 75.797 3.2188 163 89 4 0 0 0 0.38932 1 17840 17840 20.454 0.039092 1 617850 49482 1945 30949 30963 57022 57022 0.09772388142516775 VLLGHIFYV 9 Unmodified _VLLGHIFYV_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MSMS UPN47_class_I_Rep_1 2 530.8216552734375 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 73.402 1 76.788 76.288 77.288 3.3861 0 0 0 0.3264 1 18021 18021 9.3474 4.1168 1 49483 2634 30950 30964 57023 57023 0.0842811172499296 VLLGHIFYV 9 Unmodified _VLLGHIFYV_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-SECPEP UPN47_class_I_Rep_2 3 530.8211669921875 2 530.813128 1059.6117 0.24555 0.00013034 -1.7756 -0.00094253 -1.5301 -0.00081218 530.812383782462 73.78 0.036621 77.085 77.06 77.097 3.3048 5 3 2 0 0 0 0.11775 1 18156 18156 9.3474 4.1168 1 34056 49484 2634 30950 30964 57024 57024 0.0842811172499296 VLLGHIFYV 9 Unmodified _VLLGHIFYV_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MSMS UPN47_class_I_Rep_3 4 530.8215942382812 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 73.725 1 76.961 76.461 77.461 3.2363 0 0 0 0.381 1 18223 18223 5.2307 0.47466 1 49485 2634 30950 30964 57025 57025 0.0842811172499296 VLLGHIFYV 9 Unmodified _VLLGHIFYV_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MSMS UPN47_class_I_Rep_3 4 530.8133544921875 2 530.813128 1059.6117 NaN NaN NaN NaN NaN NaN NaN 74.443 1 77.69 77.19 78.19 3.2464 0 0 0 0.3264 1 18425 18425 9.3474 4.1168 1 49486 2634 30950 30964 57026 57026 0.0842811172499296 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN46_class_I_Rep_3 1 495.3232727050781 2 495.323328 988.632104 0.24756 0.00012262 -0.032506 -1.6101E-05 0.21505 0.00010652 495.3232203003121 66.155 0.3764 66.155 65.94 66.317 0 63 37 3 0 0 0 0.09884 1 14975 14975 34.102 8.7031 1 653340 49487 2091 30951 30965 57027 57027 0.13733282384794165 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN46_class_I_Rep_3 1 495.3227844238281 2 495.323328 988.632104 0.24841 0.00012304 -0.041882 -2.0745E-05 0.20653 0.0001023 495.3232308218601 66.394 0.32132 66.394 66.317 66.638 0 64 34 3 0 0 0 0.13631 2 15113 15076;15113 26.884 8.7487 1 404570 49488 2091 30951 30965 57028;57029 57029 0.13733282384794165 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN47_class_I_Rep_1 2 495.3232116699219 2 495.323328 988.632104 0.17782 8.808E-05 -0.043145 -2.1371E-05 0.13468 6.671E-05 495.3232210244114 58.884 1.0327 62.301 61.945 62.978 3.4171 168 70 3 0 0 0 0.074367 4 13630 13588;13630;13668;13706 39.957 21.822 1 777230 49489 2091 30951 30965 57030;57031;57032;57033 57031 0.13733282384794165 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN47_class_I_Rep_2 3 495.3233947753906 2 495.323328 988.632104 0.32823 0.00016258 -0.15413 -7.6346E-05 0.1741 8.6234E-05 495.3231683541417 59.266 1.1791 62.539 62.057 63.236 3.2731 177 78 3 0 0 0 0.051515 6 13766 13671;13682;13725;13766;13809;13943 48.346 29.089 1 713050 49490 2091 30951 30965 57034;57035;57036;57037;57038;57039 57037 0.13733282384794165 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN47_class_I_Rep_3 4 495.32330322265625 2 495.323328 988.632104 0.12739 6.3101E-05 0.048527 2.4037E-05 0.17592 8.7137E-05 495.3232602109807 59.381 1.0919 62.546 62.128 63.22 3.1651 133 72 3 0 0 0 0.056917 4 13859 13859;13909;13948;13990 46.021 20.622 1 427920 49491 2091 30951 30965 57040;57041;57042;57043 57040 0.13733282384794165 VLLHTLLVI 9 Unmodified _VLLHTLLVI_ 0 0 0 REV__nc|ENSG00000138613|Q8WW43-2|APH1B REV__nc|ENSG00000138613|Q8WW43-2|APH1B MULTI-MSMS UPN47_class_I_Rep_1 2 510.8443298339844 2 510.844428 1019.6743 0.22506 0.00011497 -0.07019 -3.5856E-05 0.15487 7.9116E-05 510.8442933601745 71.88 0.86156 75.255 75.103 75.965 3.3751 110 65 3 0 0 0 0.13631 1 17582 17582 26.884 0 1 540990 + 49492 19280 30952 30966 57044 57044 0.1652525779318239 VLLIAHRLRS 10 Unmodified _VLLIAHRLRS_ 0 0 0 ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 MSMS UPN46_class_I_Rep_3 1 589.3789672851562 2 589.380032 1176.74551 NaN NaN NaN NaN NaN NaN NaN 83.71 1 83.71 83.21 84.21 0 0 0 0 0.53105 1 19895 19895 1.4819 0 1 49493 1370 30953 30967 57045 57045 0.16420770550530506 VLLIAWVV 8 Unmodified _VLLIAWVV_ 0 0 0 ENST00000439657.5_3_19:54960424-54962538:+|nuORF ENST00000439657.5_3_19:54960424-54962538:+|nuORF ENST00000439657.5_3_19:54960424-54962538:+|nuORF MSMS UPN48_class_I_Rep_1 5 456.79998779296875 2 456.799489 911.584425 NaN NaN NaN NaN NaN NaN NaN 107.83 1 111.46 110.96 111.96 3.6313 0 0 0 0.4032 1 26016 26016 6.3541 0 1 49494 6769 30954 30968 57046 57046 0.1250962818461403 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.8435974121094 2 510.844428 1019.6743 0.2973 0.00015188 -0.044521 -2.2743E-05 0.25278 0.00012913 510.8442249934422 78.361 0.15613 78.361 78.273 78.429 0 27 18 3 0 0 0 0.18929 2 18332 18332;18355 21.747 0 1 270800 49495 12906 30955 30969 57047;57048 57047 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 511.263671875 2 510.844428 1019.6743 0.2973 0.00015188 -0.044521 -2.2743E-05 0.25278 0.00012913 510.8442249934422 78.361 0.15613 78.361 78.273 78.429 0 27 18 3 0 0 0 0.12321 1 18347 18347 3.9444 0 1 270800 49496 12906 30955 30969 57049 57049 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.8445129394531 2 510.844428 1019.6743 0.22109 0.00011294 -0.028582 -1.4601E-05 0.19251 9.8343E-05 510.84431168841985 71.341 0.94789 74.716 74.155 75.103 3.3751 197 81 4 0 0 0 0.25207 1 17276 17276 16.942 0 1 1468800 49497 12906 30955 30969 57050 57050 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.84442138671875 2 510.844428 1019.6743 0.22506 0.00011497 -0.07019 -3.5856E-05 0.15487 7.9116E-05 510.8442933601745 71.88 0.86156 75.255 75.103 75.965 3.3751 110 65 3 0 0 0 0.18929 1 17665 17665 21.747 0 1 540990 49498 12906 30955 30969 57051 57051 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_1 2 510.8444519042969 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.593 1 74.968 74.468 75.468 3.3751 0 0 0 0.11494 1 17466 17466 21.747 0 1 49499 12906 30955 30969 57052 57052 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_2 3 510.8440856933594 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 72.438 1 75.735 75.235 76.235 3.2971 0 0 0 0.19137 1 17757 17757 16.942 0 1 49500 12906 30955 30969 57053 57053 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_2 3 510.8440246582031 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 72.576 1 75.873 75.373 76.373 3.2971 0 0 0 0.19137 1 17797 17797 16.942 0 1 49501 12906 30955 30969 57054 57054 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_2 3 510.8446960449219 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 72.696 1 75.993 75.493 76.493 3.2971 0 0 0 0.19137 1 17834 17834 16.942 0 1 49502 12906 30955 30969 57055 57055 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.8442687988281 2 510.844428 1019.6743 0.27267 0.00013929 -0.11773 -6.0141E-05 0.15494 7.915E-05 510.84426379184623 71.819 0.83963 75.038 74.372 75.212 3.2188 218 68 4 0 0 0 0.18929 1 17487 17487 21.747 0 1 1177900 49503 12906 30955 30969 57056 57056 0.16525257793159653 VLLIPKPLQ 9 Unmodified _VLLIPKPLQ_ 0 0 0 L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense L1ME4b_dup18668|chr17:2970303-2970730:-|1.2462350042219568|0.0050983581822479|7.93|151.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.844482421875 2 510.844428 1019.6743 0.27409 0.00014002 -0.13457 -6.8747E-05 0.13951 7.1269E-05 510.8442475859309 72.051 1.2011 75.269 75.203 76.405 3.2188 220 106 4 0 0 0 0.18929 3 17844 17844;17900;17921 21.747 0 1 801870 49504 12906 30955 30969 57057;57058;57059 57057 0.16525257793159653 VLLIVIVLVVR 11 Unmodified _VLLIVIVLVVR_ 0 0 0 REV__L1M4a1_dup1095|chr6:119225432-119225990:+|1.2223331368691783|0.0081211681664963|7.23|150.0|31|2|anti-sense REV__L1M4a1_dup1095|chr6:119225432-119225990:+|1.2223331368691783|0.0081211681664963|7.23|150.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 618.4439697265625 2 618.444309 1234.87407 NaN NaN NaN NaN NaN NaN NaN 45.774 1 49.29 48.79 49.79 3.5162 0 0 0 0.38417 1 8864 8864 0 0 1 + 49505 24476 30956 30970 57060 57060 0.2660231274091984 VLLKLPLLL 9 Unmodified _VLLKLPLLL_ 0 0 0 ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|2|intron;ENSG00000186407|ENST00000392619|CD300E ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|2|intron ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|2|intron MSMS UPN48_class_I_Rep_1 5 511.3739929199219 2 511.372821 1020.73109 NaN NaN NaN NaN NaN NaN NaN 84.494 1 88.091 87.591 88.591 3.5973 0 0 0 0.4029 1 20227 20227 0 0 1 49506 5153 30957 30971 57061 57061 0.22155305349713217 VLLKVRHR 8 Unmodified _VLLKVRHR_ 0 0 0 REV__THE1A-int_dup16|chr1:50932146-50933700:-|1.65395755111148|0.057903296419189|4.84|151.0|69|2|anti-sense REV__THE1A-int_dup16|chr1:50932146-50933700:-|1.65395755111148|0.057903296419189|4.84|151.0|69|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.8449401855469 2 510.843085 1019.67162 0.29831 0.00015239 2.2684 0.0011588 2.5667 0.0013112 510.8440210733243 78.714 0.075165 78.714 78.658 78.734 0 13 8 2 0 0 0 0.82752 1 18439 18439 9.3474 0 1 233580 + 49507 32208 30958 30972 57062 57062 0.16256847178885891 VLLKVRHR 8 Unmodified _VLLKVRHR_ 0 0 0 REV__THE1A-int_dup16|chr1:50932146-50933700:-|1.65395755111148|0.057903296419189|4.84|151.0|69|2|anti-sense REV__THE1A-int_dup16|chr1:50932146-50933700:-|1.65395755111148|0.057903296419189|4.84|151.0|69|2|anti-sense MSMS UPN48_class_I_Rep_2 6 510.843994140625 2 510.843085 1019.67162 NaN NaN NaN NaN NaN NaN NaN 71.479 1 75.03 74.53 75.53 3.5505 0 0 0 0.40364 1 16680 16680 5.7604 0 1 + 49508 32208 30958 30972 57063 57063 0.16256847178885891 VLLLGKNR 8 Unmodified _VLLLGKNR_ 0 0 0 ENST00000560691.5_1_15:71192806-71200991:+|nuORF;ENST00000560980.5_1_15:71185191-71211425:+|nuORF;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49 ENST00000560691.5_1_15:71192806-71200991:+|nuORF ENST00000560691.5_1_15:71192806-71200991:+|nuORF MSMS UPN47_class_I_Rep_1 2 456.8037109375 2 456.803094 911.591636 NaN NaN NaN NaN NaN NaN NaN 37.53 1 41.196 40.696 41.696 3.6652 0 0 0 0.40738 1 7132 7132 0.79363 0 1 49509 3047 30959 30973 57064 57064 0.1323036078503037 VLLLHMIL 8 Unmodified _VLLLHMIL_ 0 0 0 L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|78|1|anti-sense L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|78|1|anti-sense L1M1_dup6784|chr10:67943863-67946002:+|3.6246465746763055|0.1816527171783356|4.32|151.0|78|1|anti-sense MSMS UPN46_class_I_Rep_3 1 476.3061828613281 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 64.691 1 64.691 64.191 65.191 0 0 0 0 0.40738 1 14577 14577 0.79363 0 1 49510 8603 30960 30974 57065 57065 0.12141957341236775 VLLLHTVLL 9 Unmodified _VLLLHTVLL_ 0 0 0 L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|54|1|anti-sense L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|54|1|anti-sense L1ME3E_dup25|chr1:8386933-8388315:+|3.1467302504084813|0.1091128213373992|4.85|151.0|54|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.8445129394531 2 510.844428 1019.6743 0.22506 0.00011497 -0.07019 -3.5856E-05 0.15487 7.9116E-05 510.8442933601745 71.88 0.86156 75.255 75.103 75.965 3.3751 110 65 3 0 0 0 0.25207 1 17708 17708 16.942 0 1 540990 49511 12807 30961 30975 57066 57066 0.16525257793159653 VLLLHWYAT 9 Unmodified _VLLLHWYAT_ 0 0 0 ENSG00000256188|ENST00000539585|TAS2R30 ENSG00000256188|ENST00000539585|TAS2R30 ENSG00000256188|ENST00000539585|TAS2R30 MSMS UPN48_class_I_Rep_2 6 558.3153686523438 2 558.316035 1114.61752 NaN NaN NaN NaN NaN NaN NaN 90.346 1 94.093 93.593 94.593 3.7471 0 0 0 0.40038 1 21533 21533 0.6015 0 1 49512 5765 30962 30976 57067 57067 0.06479210236625477 VLLLIHMI 8 Unmodified _VLLLIHMI_ 0 0 0 REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|150|3|anti-sense REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|150|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.306396484375 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 53.918 1 53.918 53.418 54.418 0 0 0 0 0.40738 1 11636 11636 0.79363 0 1 + 49513 24584 30963 30977 57068 57068 0.12141957341236775 VLLLIHMI 8 Unmodified _VLLLIHMI_ 0 0 0 REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|150|3|anti-sense REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|150|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.306640625 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 81.595 1 81.595 81.095 82.095 0 0 0 0 0.40738 1 19277 19277 0.79363 0 1 + 49514 24584 30963 30977 57069 57069 0.12141957341236775 VLLLIHMI 8 Unmodified _VLLLIHMI_ 0 0 0 REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|150|3|anti-sense REV__L1M4c_dup2352|chr10:42540378-42542520:+|1.5851087542073428|0.0573665200387082|4.79|151.0|150|3|anti-sense MSMS UPN46_class_I_Rep_3 1 476.30694580078125 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 83.035 1 83.035 82.535 83.535 0 0 0 0 0.40738 1 19699 19699 0.79363 0 1 + 49515 24584 30963 30977 57070 57070 0.12141957341236775 VLLLKFFL 8 Unmodified _VLLLKFFL_ 0 0 0 L1MB7_dup5823|chr4:105250982-105251860:-|1.0973378872717623|0.0298561740706011|5.2|151.0|47|2|anti-sense L1MB7_dup5823|chr4:105250982-105251860:-|1.0973378872717623|0.0298561740706011|5.2|151.0|47|2|anti-sense L1MB7_dup5823|chr4:105250982-105251860:-|1.0973378872717623|0.0298561740706011|5.2|151.0|47|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 497.45611572265625 2 496.830789 991.647025 -0.29804 -0.00014808 -0.56862 -0.00028251 -0.86666 -0.00043058 496.8301857983749 12.288 0.061979 12.288 12.244 12.306 0 9 6 2 0 0 0 0.72333 1 65 65 0 0 1 8917.7 49516 10855 30964 30978 57071 57071 0.15086774252790747 VLLLKIIQ 8 Unmodified _VLLLKIIQ_ 0 0 0 REV__nc|ENSG00000141524|Q7Z403-3|TMC6 REV__nc|ENSG00000141524|Q7Z403-3|TMC6 MSMS UPN47_class_I_Rep_3 4 470.3318786621094 2 470.333696 938.652839 NaN NaN NaN NaN NaN NaN NaN 91.22 1 94.621 94.121 95.121 3.401 0 0 0 0.40746 1 22825 22825 0.69038 0 1 + 49517 19382 30965 30979 57072 57072 0.18105872764454034 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN47_class_I_Rep_2 3 449.32708740234375 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 108.42 1 111.95 111.45 112.45 3.5333 0 0 0 0.40798 1 26297 26297 0 0 1 + 49518 27282 30966 30980 57073 57073 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN47_class_I_Rep_2 3 449.3277282714844 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 108.66 1 112.2 111.7 112.7 3.5333 0 0 0 0.40798 1 26379 26379 0 0 1 + 49519 27282 30966 30980 57074 57074 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN47_class_I_Rep_3 4 449.3271179199219 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 108.24 1 111.77 111.27 112.27 3.5382 0 0 0 0.40798 1 26470 26470 0 0 1 + 49520 27282 30966 30980 57075 57075 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 449.7601318359375 2 449.328414 896.642274 -0.18651 -8.3805E-05 -0.40096 -0.00018016 -0.58747 -0.00026397 449.3268469418719 108.93 0.28554 112.47 112.38 112.66 3.5382 48 31 3 0 0 0 0.72333 1 26743 26743 0 0 1 4620800 + 49521 27282 30966 30980 57076 57076 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 449.32696533203125 2 449.328414 896.642274 0.0015261 6.8573E-07 -2.3324 -0.001048 -2.3309 -0.0010473 449.3270441644112 108.42 0.18996 112.05 111.95 112.14 3.6313 35 15 3 0 0 0 0.72333 1 26208 26208 0 0 1 5463700 + 49522 27282 30966 30980 57077 57077 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 449.8296813964844 2 449.328414 896.642274 0.14834 6.6653E-05 -0.96687 -0.00043444 -0.81853 -0.00036779 449.3277954793228 108.57 0.082184 112.24 112.21 112.29 3.6746 6 5 2 0 0 0 0.82752 1 25761 25761 0 0 1 3048500 + 49523 27282 30966 30980 57078 57078 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN48_class_I_Rep_2 6 449.3271179199219 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 107.81 1 111.48 110.98 111.98 3.6783 0 0 0 0.40798 1 25509 25509 0 0 1 + 49524 27282 30966 30980 57079 57079 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 449.3272399902344 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 107.86 1 111.54 111.04 112.04 3.6813 0 0 0 0.40798 1 25469 25469 0 0 1 + 49525 27282 30966 30980 57080 57080 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 449.3273010253906 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 108.03 1 111.71 111.21 112.21 3.6813 0 0 0 0.40798 1 25522 25522 0 0 1 + 49526 27282 30966 30980 57081 57081 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 449.3281555175781 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 108.56 1 112.23 111.73 112.73 3.6751 0 0 0 0.40798 1 25699 25699 0 0 1 + 49527 27282 30966 30980 57082 57082 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 449.3272705078125 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 108.87 1 112.55 112.05 113.05 3.6751 0 0 0 0.40798 1 25819 25819 0 0 1 + 49528 27282 30966 30980 57083 57083 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 449.3269958496094 2 449.328414 896.642274 NaN NaN NaN NaN NaN NaN NaN 109.38 1 113.05 112.55 113.55 3.6751 0 0 0 0.40798 1 25970 25970 0 0 1 + 49529 27282 30966 30980 57084 57084 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 449.328414 896.642274 0.17854 8.0224E-05 -4.2394 -0.0019049 -4.0609 -0.0018247 449.32644257811376 109.08 0.16296 112.68 112.59 112.75 3.6046 0.096009 -0.0011502 NaN 0 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1111300 + 49530 27282 30966 30980 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 449.328414 896.642274 0.14808 6.6538E-05 -2.943 -0.0013224 -2.7949 -0.0012558 449.32697966494317 108.82 0.56232 112.49 112.29 112.85 3.6746 -0.09666 1.483E-05 NaN 0 112 62 2 NaN NaN NaN NaN 0 NaN NaN 0 7986700 + 49531 27282 30966 30980 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 449.328414 896.642274 0.16412 7.3745E-05 -2.9197 -0.0013119 -2.7556 -0.0012382 449.3269148951863 109.03 0.19097 112.71 112.61 112.8 3.6751 0.11986 3.5734E-05 NaN 0 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4301800 + 49532 27282 30966 30980 0.189818901100125 VLLLKLAK 8 Unmodified _VLLLKLAK_ 0 0 0 REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense REV__L1MD_dup7421|chr15:90025819-90027073:+|2.836090751537335|0.0407549125534681|6.12|151.0|33|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 449.328414 896.642274 0.16395 7.3667E-05 -2.2913 -0.0010296 -2.1274 -0.0009559 449.32731289882713 108.63 0.40152 112.31 112.23 112.63 3.6751 0.10696 -0.00027069 NaN 0 72 45 2 NaN NaN NaN NaN 0 NaN NaN 0 8936700 + 49533 27282 30966 30980 0.189818901100125 VLLLLLLL 8 Unmodified _VLLLLLLL_ 0 0 0 nc|ENSG00000213402|Q14761|PTPRCAP;ENSG00000135077|ENST00000307851|HAVCR2;L1MA3_dup185|chr1:93292182-93294877:+|3.546192490156342|0.063373414765128|5.81|151.0|119|1|anti-sense;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000483836.1_1_22:50500014-50511179:-|nuORF;ENSG00000142552|ENST00000270645|RCN3;nc|ENSG00000175356|Q9NQ36|SCUBE2;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;ENSG00000169962|ENST00000339381|TAS1R3;nc|ENSG00000175356|Q9NQ36-3|SCUBE2;nc|ENSG00000174348|Q7Z5L7-3|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-4|PODN;ENSG00000196196|ENST00000354323|HRCT1;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000373874.6_1_20:35220081-35220303:+|nuORF;MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|66|2|sense;L1MB2_dup2165|chr4:150909113-150912185:-|1.5033955477069718|0.0691281229685836|4.44|151.0|120|1|anti-sense;AluSg7_dup5311|chr11:47540603-47540914:+|1.6329415845992563|0.0098996396927015|7.37|151.0|11|1|anti-sense;L1ME2_dup1543|chr2:98525513-98526368:+|1.3079219195766356|0.0491830335642735|4.73|150.0|57|3|anti-sense;L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|256|3|anti-sense;L1M1_dup5526|chrX:79245664-79248823:+|4.208571957472215|0.0382545707923447|6.78|150.0|202|3|anti-sense;L1MA7_dup6169|chr11:77965347-77966909:-|1.2223331368691783|0.0165877245832207|6.2|150.0|108|3|anti-sense;ENSG00000175356|ENST00000649792|SCUBE2;ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;CON__ENSEMBL:ENSBTAP00000032840;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000161921|ENST00000293778|CXCL16;ENST00000498707.5_1_3:64673464-64673620:-|nuORF REV__ENSG00000166250|ENST00000448775|CLMP;ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000131042|Q8N423-4|LILRB2;CON__ENSEMBL:ENSBTAP00000032840;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000161921|ENST00000293778|CXCL16;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;REV__ENSG00000103522|ENST00000337929|IL21R;REV__ENSG00000123384|ENST00000243077|LRP1;REV__nc|ENSG00000124783|P43307-2|SSR1;REV__ENSG00000161921|ENST00000293778|CXCL16 CON__ENSEMBL:ENSBTAP00000032840 MSMS UPN46_class_I_Rep_3 1 455.34246826171875 2 455.34099 908.667426 NaN NaN NaN NaN NaN NaN NaN 84.782 1 84.782 84.282 85.282 0 0 0 0 0.40798 1 20191 20191 0 0 1 + 49534 629;2081;20162;4250;2695;1506;3909;7123;18231;18779;18818;19914 30967 30981 57085 57085 0.20943944912619372 VLLLPKVNK 9 Unmodified _VLLLPKVNK_ 0 0 0 ENSG00000187616|ENST00000339996|MYMK ENSG00000187616|ENST00000339996|MYMK ENSG00000187616|ENST00000339996|MYMK MSMS UPN46_class_I_Rep_3 1 512.3499145507812 2 512.349877 1022.6852 NaN NaN NaN NaN NaN NaN NaN 81.909 1 81.909 81.409 82.409 0 0 0 0 0.26661 1 19371 19371 12.532 0 1 49535 5197 30968 30982 57086 57086 0.17476660167460523 VLLLRHLP 8 Unmodified _VLLLRHLP_ 0 0 0 REV__ENST00000338154.10_1_X:53965368-53965482:-|nuORF REV__ENST00000338154.10_1_X:53965368-53965482:-|nuORF MSMS UPN47_class_I_Rep_2 3 481.23443603515625 2 480.821287 959.628021 NaN NaN NaN NaN NaN NaN NaN 48 1 51.349 50.849 51.849 3.3492 0 0 0 0.40738 1 10338 10338 0.79363 0 1 + 49536 21805 30969 30983 57087 57087 0.1465923768173525 VLLMCNKTY 9 Unmodified _VLLMCNKTY_ 0 0 0 ENST00000458542.1_1_3:25791186-25791384:+|nuORF ENST00000458542.1_1_3:25791186-25791384:+|nuORF ENST00000458542.1_1_3:25791186-25791384:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 542.7797241210938 2 542.780113 1083.54567 -0.23514 -0.00012763 -0.69466 -0.00037705 -0.92979 -0.00050467 542.7796531603194 27.681 0.63971 31.024 30.816 31.455 3.3422 87 52 2 0 0 0 0.46869 1 4202 4202 3.9444 3.9444 1 88453 49537 6848 30970 30984 57088 57088 0.00724211496276439 VLLMLHLL 8 Unmodified _VLLMLHLL_ 0 0 0 REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|45|1|anti-sense REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|45|1|anti-sense MSMS UPN46_class_I_Rep_3 1 475.8254699707031 2 476.306624 950.598695 NaN NaN NaN NaN NaN NaN NaN 79.242 1 79.242 78.742 79.742 0 0 0 0 0.40581 1 18605 18605 2.8892 0 1 + 49538 24197 30971 30985 57089 57089 0.12141957341259513 VLLNCPCFL 9 Unmodified _VLLNCPCFL_ 0 0 0 REV__L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|65|1|anti-sense REV__L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|65|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 511.263671875 2 511.264099 1020.51364 0.29744 0.00015207 -0.99866 -0.00051058 -0.70122 -0.00035851 511.2635427982006 78.315 0.091393 78.315 78.273 78.364 0 14 10 2 0 0 0 0.23311 1 18347 18347 18.135 1.0484 1 210700 + 49539 27110 30972 30986 57090 57090 0.004208438131172443 VLLPHKKR 8 Unmodified _VLLPHKKR_ 0 0 0 L1MA9_dup16034|chr21:38482977-38483419:+|1.312361521252729|0.0096554820590269|7.09|150.0|13|2|sense L1MA9_dup16034|chr21:38482977-38483419:+|1.312361521252729|0.0096554820590269|7.09|150.0|13|2|sense L1MA9_dup16034|chr21:38482977-38483419:+|1.312361521252729|0.0096554820590269|7.09|150.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 495.8241271972656 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 59.932 1 63.097 62.597 63.597 3.1651 0 0 0 0.4032 1 14037 14037 6.3541 0 1 49540 10123 30973 30987 57091 57091 0.15458042430316254 VLLPLRVTL 9 Unmodified _VLLPLRVTL_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MSMS UPN46_class_I_Rep_3 1 512.3502197265625 2 512.349877 1022.6852 NaN NaN NaN NaN NaN NaN NaN 81.633 1 81.633 81.133 82.133 0 0 0 0 0.00086493 1 19289 19289 62.573 12.64 1 49541 3104 30974 30988 57092 57092 0.17476660167460523 VLLPRSLFFF 10 Unmodified _VLLPRSLFFF_ 0 0 0 REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|30|1|anti-sense REV__HAL1_dup2649|chr2:73747172-73747733:+|1.484954391765198|0.4514417141569148|1.72|151.0|30|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.8693237304688 2 619.868434 1237.72232 0.6068 0.00037614 1.6531 0.0010247 2.2599 0.0014009 619.8694726479835 85.789 0.1681 89.559 89.488 89.656 3.7701 19 17 2 0 0 0 0.56281 1 20358 20358 1.8442 0 1 69215 + 49542 23414 30975 30989 57093 57093 0.11296331713219843 VLLPRVLVL 9 Unmodified _VLLPRVLVL_ 0 0 0 ENSG00000172037|ENST00000305544|LAMB2;ENST00000493571.1_1_3:49163084-49163812:-|nuORF ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 MSMS UPN48_class_I_Rep_2 6 511.6535949707031 2 511.360245 1020.70594 NaN NaN NaN NaN NaN NaN NaN 77.005 1 80.616 80.116 81.116 3.6116 0 0 0 0.39518 1 18203 18203 1.8442 0 1 49543 4556 30976 30990 57094 57094 0.19641250547113032 VLLPRVLVL 9 Unmodified _VLLPRVLVL_ 0 0 0 ENSG00000172037|ENST00000305544|LAMB2;ENST00000493571.1_1_3:49163084-49163812:-|nuORF ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 MSMS UPN48_class_I_Rep_3 7 511.36053466796875 2 511.360245 1020.70594 NaN NaN NaN NaN NaN NaN NaN 77.152 1 80.754 80.254 81.254 3.6016 0 0 0 0.11494 1 18207 18207 21.747 0 1 49544 4556 30976 30990 57095 57095 0.19641250547113032 VLLQEANIT 9 Unmodified _VLLQEANIT_ 0 0 0 ENST00000509621.1_3_5:89989878-90055411:+|nuORF;ENSG00000164199|ENST00000405460|ADGRV1 ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENST00000509621.1_3_5:89989878-90055411:+|nuORF MSMS UPN47_class_I_Rep_3 4 500.7892150878906 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 88.014 1 91.402 90.902 91.902 3.3873 0 0 0 0.24828 1 22068 22068 13.508 0 1 49545 4096 30977 30991 57096 57096 0.060263232404167866 VLLQEPGEL 9 Unmodified _VLLQEPGEL_ 0 0 0 REV__L1MEc_dup15147|chr14:71085906-71086973:-|1.419436399394363|0.2816788966846848|2.33|151.0|53|2|anti-sense REV__L1MEc_dup15147|chr14:71085906-71086973:-|1.419436399394363|0.2816788966846848|2.33|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.2816162109375 2 499.281857 996.549162 -0.08028 -4.0082E-05 0.24045 0.00012005 0.16017 7.997E-05 499.2819095865811 46.017 0.98336 49.717 49.306 50.289 3.6999 190 62 4 0 0 0 0.46434 1 9869 9869 4.3292 0 1 1324800 + 49546 28388 30978 30992 57097 57097 0.050749208661500234 VLLQHRRV 8 Unmodified _VLLQHRRV_ 0 0 0 nc|ENSG00000099326|P28698-2|MZF1;ENST00000600004.1_1_19:59073441-59074896:-|nuORF;ENSG00000099326|ENST00000215057|MZF1 nc|ENSG00000099326|P28698-2|MZF1 nc|ENSG00000099326|P28698-2|MZF1 MSMS UPN47_class_I_Rep_1 2 510.84466552734375 2 510.824892 1019.63523 NaN NaN NaN NaN NaN NaN NaN 72.537 1 75.916 75.416 76.416 3.3799 0 0 0 0.40364 1 17755 17755 5.7604 0 1 49547 1435 30979 30993 57098 57098 0.12619970282173654 VLLRAITDL 9 Unmodified _VLLRAITDL_ 0 0 0 L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|18|1|sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|18|1|sense L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|18|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 507.3212585449219 2 507.321317 1012.62808 0.39297 0.00019936 -0.26543 -0.00013466 0.12754 6.4703E-05 507.32114008587973 59.278 0.53827 62.765 62.502 63.041 3.4868 43 35 2 0 0 0 0.31407 1 13013 13013 13.042 0.80181 1 94374 49548 10385 30980 30994 57099 57099 0.1222719289107772 VLLRGRDGNN 10 Unmodified _VLLRGRDGNN_ 0 0 0 REV__nc|ENSG00000163093|Q8N3I7-2|BBS5 REV__nc|ENSG00000163093|Q8N3I7-2|BBS5 MSMS UPN48_class_I_Rep_2 6 557.310791015625 2 557.309803 1112.60505 NaN NaN NaN NaN NaN NaN NaN 48.916 1 52.633 52.133 53.133 3.7175 0 0 0 0.53105 1 9826 9826 1.3295 0.25807 1 + 49549 19962 30981 30995 57100 57100 0.05325566826331851 VLLRIFTSVFI 11 Unmodified _VLLRIFTSVFI_ 0 0 0 L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|205|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|205|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|205|1|anti-sense MSMS UPN48_class_I_Rep_3 7 436.6083068847656 3 436.607708 1306.80129 NaN NaN NaN NaN NaN NaN NaN 60.422 1 63.939 63.439 64.439 3.5169 0 0 0 0.38417 1 13273 13273 0.50596 0 1 49550 14335 30982 30996 57101 57101 0.1601655894751275 VLLRQGFHE 9 Unmodified _VLLRQGFHE_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 REV__nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS UPN47_class_I_Rep_2 3 549.81689453125 2 549.806365 1097.59818 NaN NaN NaN NaN NaN NaN NaN 12.625 1 16.013 15.513 16.513 3.3885 0 0 0 0.38639 1 114 114 3.9444 0 1 + 49551 18608 30983 30997 57102 57102 0.05328253945776851 VLLRSVRPLRL 11 Unmodified _VLLRSVRPLRL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS UPN47_class_I_Rep_2 3 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.6 1 32.099 31.599 32.599 3.4986 0 0 0 0.38417 1 4460 4460 0.094841 0 1 49552 1490 30984 30998 57103 57103 0.22417277055842533 VLLRSVRPLRL 11 Unmodified _VLLRSVRPLRL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS UPN47_class_I_Rep_2 3 441.2983093261719 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 40.789 1 44.16 43.66 44.66 3.3712 0 0 0 0.38417 1 8158 8158 0.094841 0 1 49553 1490 30984 30998 57104 57104 0.22417277055842533 VLLRSVRPLRL 11 Unmodified _VLLRSVRPLRL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS UPN47_class_I_Rep_3 4 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.166 1 77.402 76.902 77.902 3.2363 0 0 0 0.38417 1 18346 18346 0.094841 0 1 49554 1490 30984 30998 57105 57105 0.22417277055842533 VLLRSVRPLRL 11 Unmodified _VLLRSVRPLRL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS UPN47_class_I_Rep_3 4 441.2975158691406 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 74.328 1 77.564 77.064 78.064 3.2363 0 0 0 0.38417 1 18391 18391 0.094841 0 1 49555 1490 30984 30998 57106 57106 0.22417277055842533 VLLRSVRPLRL 11 Unmodified _VLLRSVRPLRL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS UPN48_class_I_Rep_2 6 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.279 1 54.947 54.447 55.447 3.6679 0 0 0 0.38417 1 10554 10554 0.50596 0 1 49556 1490 30984 30998 57107 57107 0.22417277055842533 VLLSHILIL 9 Unmodified _VLLSHILIL_ 0 0 0 L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|23|1|anti-sense L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|23|1|anti-sense L1MEc_dup11538|chr10:832494-833051:+|2.193839006399031|0.1545186003484379|3.83|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 510.8446960449219 2 510.844428 1019.6743 NaN NaN NaN NaN NaN NaN NaN 71.689 1 75.215 74.715 75.715 3.5266 0 0 0 0.35339 1 16665 16665 7.9102 0 1 49557 13004 30985 30999 57108 57108 0.1652525779318239 VLLSHLSYL 9 Unmodified _VLLSHLSYL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_1 2 522.8081665039062 2 522.808042 1043.60153 0.30244 0.00015812 -0.38278 -0.00020012 -0.080337 -4.2001E-05 522.8077655886017 63.161 0.29018 66.521 66.284 66.574 3.3595 40 21 2 0 0 0 0.066041 1 14920 14920 42.095 6.0504 1 375910 49558 3600 30986 31000 57109 57109 0.08147503999748551 VLLSHLSYL 9 Unmodified _VLLSHLSYL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_1 2 522.8079223632812 2 522.808042 1043.60153 0.29961 0.00015664 -0.43657 -0.00022824 -0.13696 -7.1605E-05 522.8077609788685 63.35 0.4179 66.709 66.555 66.973 3.3595 66 34 2 0 0 0 0.0058313 3 14962 14962;14998;15040 81.613 17.377 1 535640 49559 3600 30986 31000 57110;57111;57112 57110 0.08147503999748551 VLLSHLSYL 9 Unmodified _VLLSHLSYL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_2 3 522.807861328125 2 522.808042 1043.60153 -0.0010207 -5.3364E-07 0.012807 6.6956E-06 0.011786 6.1619E-06 522.807943955849 63.653 0.87009 66.909 66.508 67.378 3.2556 150 72 3 0 0 0 0.0069816 4 15116 15079;15116;15156;15207 120.45 35.094 1 634680 49560 3600 30986 31000 57113;57114;57115;57116 57114 0.08147503999748551 VLLSHLSYL 9 Unmodified _VLLSHLSYL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MSMS UPN47_class_I_Rep_3 4 522.807861328125 2 522.808042 1043.60153 0.3139 0.00016411 -0.16395 -8.5715E-05 0.14995 7.8393E-05 522.8078079798224 63.731 0.8707 66.905 66.474 67.345 3.1741 141 71 3 0 0 0 0.013968 4 15217 15131;15217;15264;15316 67.344 12.679 1 303830 49561 3600 30986 31000 57117;57118;57119;57120 57118 0.08147503999748551 VLLSHLSYL 9 Unmodified _VLLSHLSYL_ 0 0 0 nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 nc|ENSG00000151702|Q01543-2|FLI1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 522.808042 1043.60153 0.29553 0.00015451 -0.33054 -0.00017281 -0.035006 -1.8302E-05 522.8077828782483 63.687 0.30202 67.043 66.969 67.271 3.3557 0.09087 -0.00029218 NaN 120.45 42 26 2 NaN NaN NaN NaN 0 NaN NaN 0 162540 49562 3600 30986 31000 0.08147503999748551 VLLSKLEAV 9 Unmodified _VLLSKLEAV_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MSMS UPN47_class_I_Rep_2 3 486.3100891113281 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.521 1 60.812 60.312 61.312 3.2912 0 0 0 0.3824 1 13250 13250 4.897 0 1 + 49563 20438 30987 31001 57121 57121 0.11980388142524134 VLLSKLEAV 9 Unmodified _VLLSKLEAV_ 0 0 0 REV__ENSG00000172167|ENST00000305949|MTBP REV__ENSG00000172167|ENST00000305949|MTBP MSMS UPN47_class_I_Rep_2 3 486.31036376953125 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 57.666 1 60.958 60.458 61.458 3.2912 0 0 0 0.3377 1 13294 13294 8.7454 0 1 + 49564 20438 30987 31001 57122 57122 0.11980388142524134 VLLSKYDTL 9 Unmodified _VLLSKYDTL_ 0 0 0 nc|ENSG00000162779|Q5T1B0-2|AXDND1;ENST00000461179.2_1_1:179339175-179437601:+|nuORF;ENSG00000162779|ENST00000367618|AXDND1 nc|ENSG00000162779|Q5T1B0-2|AXDND1 nc|ENSG00000162779|Q5T1B0-2|AXDND1 MULTI-MSMS UPN47_class_I_Rep_1 2 526.3146362304688 2 526.305332 1050.59611 0.30684 0.00016149 -3.3554 -0.001766 -3.0486 -0.0016045 526.8040815051756 71.596 0.14267 74.971 74.858 75 3.3751 10 9 2 0 0 0 0.25207 1 17475 17475 16.942 0 1 31413 49565 3961 30988 31002 57123 57123 0.07283780417287744 VLLSRASFA 9 Unmodified _VLLSRASFA_ 0 0 0 REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.2839050292969 2 482.284734 962.554916 0.19602 9.4535E-05 0.27001 0.00013022 0.46602 0.00022476 482.28481985955636 54.503 0.31218 54.503 54.301 54.613 0 54 32 2 0 0 0 0.090251 2 11780 11780;11816 36.127 0 1 356860 + 49566 25356 30989 31003 57124;57125 57124 0.07214064168465484 VLLSRASFA 9 Unmodified _VLLSRASFA_ 0 0 0 REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.8464660644531 2 482.284734 962.554916 0.19494 9.4015E-05 0.055446 2.6741E-05 0.25038 0.00012076 482.28470781532764 54.644 0.33549 54.644 54.575 54.911 0 60 40 2 0 0 0 0.15122 2 11841 11841;11890 25.399 0 1 322400 + 49567 25356 30989 31003 57126;57127 57126 0.07214064168465484 VLLSRASFA 9 Unmodified _VLLSRASFA_ 0 0 0 REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.2848205566406 2 482.284734 962.554916 -0.06001 -2.8942E-05 0.19663 9.4834E-05 0.13662 6.5891E-05 482.2847556229136 48.348 1.4805 52.03 51.542 53.023 3.6819 237 92 4 0 0 0 0.061943 5 10354 10312;10354;10512;10553;10599 43.858 0 1 2476600 + 49568 25356 30989 31003 57128;57129;57130;57131;57132 57129 0.07214064168465484 VLLSRASFA 9 Unmodified _VLLSRASFA_ 0 0 0 REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense REV__L1MA5_dup1012|chr4:13316790-13321120:-|1.0592184725190867|0.0251062868676231|5.4|151.0|226|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.2847900390625 2 482.284734 962.554916 -0.031568 -1.5225E-05 0.57142 0.00027559 0.53985 0.00026036 482.28473489363887 49.421 0.12664 53.081 53 53.127 3.6592 14 9 2 0 0 0 0.30034 1 10756 10756 13.906 0 1 58938 + 49569 25356 30989 31003 57133 57133 0.07214064168465484 VLLSSVLIL 9 Unmodified _VLLSSVLIL_ 0 0 0 REV__L1PA7_dup12019|chr16:74515714-74518819:+|1.4746025214023706|0.0345453665323953|5.42|148.0|185|3|anti-sense REV__L1PA7_dup12019|chr16:74515714-74518819:+|1.4746025214023706|0.0345453665323953|5.42|148.0|185|3|anti-sense MSMS UPN47_class_I_Rep_2 3 478.75714111328125 2 478.823161 955.631769 NaN NaN NaN NaN NaN NaN NaN 20.292 1 23.699 23.199 24.199 3.4074 0 0 0 0.4007 1 2078 2078 0.52476 0 1 + 49570 30008 30990 31004 57134 57134 0.15217862664962922 VLLSTLVY 8 Unmodified _VLLSTLVY_ 0 0 0 L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|62|1|anti-sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|62|1|anti-sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2795715332031 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 38.749 1 42.414 41.914 42.914 3.6652 0 0 0 0.40738 1 7502 7502 0.79363 0 1 49571 9629 30991 31005 57135 57135 0.08561027705434299 VLLSTLVY 8 Unmodified _VLLSTLVY_ 0 0 0 L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|62|1|anti-sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|62|1|anti-sense L1MA3_dup7756|chr15:56205841-56207135:+|1.3036498215440622|0.0138436704617149|6.56|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.2798156738281 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 48.343 1 51.692 51.192 52.192 3.3492 0 0 0 0.40738 1 10443 10443 0.79363 0 1 49572 9629 30991 31005 57136 57136 0.08561027705434299 VLLSTNYLG 9 Unmodified _VLLSTNYLG_ 0 0 0 nc|ENSG00000050426|Q6P1Q0-4|LETMD1;nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1;nc|ENSG00000050426|Q6P1Q0-5|LETMD1;ENST00000546814.1_1_12:51450084-51453211:+|nuORF;ENST00000548516.5_1_12:51450138-51453211:+|nuORF nc|ENSG00000050426|Q6P1Q0-4|LETMD1 nc|ENSG00000050426|Q6P1Q0-4|LETMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 490.2760009765625 2 490.276575 978.538597 -0.11164 -5.4732E-05 0.43303 0.0002123 0.32139 0.00015757 490.27655590934893 39.598 0.59252 42.977 42.713 43.306 3.3785 68 38 2 0 0 0 0.42249 1 7866 7866 6.7232 0 1 91351 49573 914 30992 31006 57137 57137 0.04846938211721863 VLLTHLLV 8 Unmodified _VLLTHLLV_ 0 0 0 nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B nc|ENSG00000138613|Q8WW43-2|APH1B nc|ENSG00000138613|Q8WW43-2|APH1B MULTI-SECPEP UPN47_class_I_Rep_3 4 453.78485107421875 2 454.302396 906.590239 -0.20717 -9.4118E-05 0.080937 3.677E-05 -0.12623 -5.7349E-05 454.3022038890426 55.182 0.080097 58.36 58.292 58.372 3.1779 7 5 2 0 0 0 0.72333 1 12580 12580 4.756 0 1 42731 49574 3098 30993 31007 57138 57138 0.13320726696292695 VLLTRPVIL 9 Unmodified _VLLTRPVIL_ 0 0 0 nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A MSMS UPN46_class_I_Rep_3 1 512.3499145507812 2 512.349877 1022.6852 NaN NaN NaN NaN NaN NaN NaN 81.791 1 81.791 81.291 82.291 0 0 0 0 0.2408 1 19336 19336 13.906 0 1 49575 2059 30994 31008 57139 57139 0.17476660167460523 VLLTRRLSP 9 Unmodified _VLLTRRLSP_ 0 0 0 ERVL-E-int_dup3721|chr6:107439409-107440471:+|1.1146772451023463|0.0146087154949269|6.25|148.0|45|1|anti-sense ERVL-E-int_dup3721|chr6:107439409-107440471:+|1.1146772451023463|0.0146087154949269|6.25|148.0|45|1|anti-sense ERVL-E-int_dup3721|chr6:107439409-107440471:+|1.1146772451023463|0.0146087154949269|6.25|148.0|45|1|anti-sense MSMS UPN47_class_I_Rep_2 3 527.8406372070312 2 527.840208 1053.66586 NaN NaN NaN NaN NaN NaN NaN 94.381 1 97.853 97.353 98.353 3.472 0 0 0 0.39428 1 23266 23266 2.0598 0 1 49576 7756 30995 31009 57140 57140 0.14117703876559062 VLLTSVHYL 9 Unmodified _VLLTSVHYL_ 0 0 0 L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|57|2|anti-sense L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|57|2|anti-sense L1MC4_dup9560|chr6:116723159-116724197:+|2.131848364914941|0.3630236262134761|2.55|151.0|57|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 522.8080444335938 2 522.808042 1043.60153 0.3139 0.00016411 -0.16395 -8.5715E-05 0.14995 7.8393E-05 522.8078079798224 63.731 0.8707 66.905 66.474 67.345 3.1741 141 71 3 0 0 0 0.060667 1 15172 15172 44.407 2.3125 1 303830 49577 11539 30996 31010 57141 57141 0.08147503999748551 VLLVKVSHR 9 Unmodified _VLLVKVSHR_ 0 0 0 MLT1H1_dup1618|chr7:152424824-152425110:-|1.2991756070536462|0.0030545848602251|8.73|151.0|16|2|anti-sense MLT1H1_dup1618|chr7:152424824-152425110:-|1.2991756070536462|0.0030545848602251|8.73|151.0|16|2|anti-sense MLT1H1_dup1618|chr7:152424824-152425110:-|1.2991756070536462|0.0030545848602251|8.73|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.3632202148438 2 525.842751 1049.67095 NaN NaN NaN NaN NaN NaN NaN 115.2 1 118.68 118.18 119.18 3.4802 0 0 0 0.40098 1 28318 28318 0.45834 0.45834 1 49578 16437 30997 31011 57142 57142 0.1481000773917458 VLLVLLET 8 Unmodified _VLLVLLET_ 0 0 0 REV__HAL1_dup13674|chrX:72423255-72424579:-|2.7512143663697843|0.0504955445357461|5.77|150.0|67|2|anti-sense REV__HAL1_dup13674|chrX:72423255-72424579:-|2.7512143663697843|0.0504955445357461|5.77|150.0|67|2|anti-sense MSMS UPN48_class_I_Rep_2 6 450.2954406738281 2 450.294236 898.57392 NaN NaN NaN NaN NaN NaN NaN 53.345 1 56.955 56.455 57.455 3.6098 0 0 0 0.40746 1 11171 11171 0.69038 0 1 + 49579 23351 30998 31012 57143 57143 0.12057600739535701 VLLVLLPN 8 Unmodified _VLLVLLPN_ 0 0 0 REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29718017578125 2 440.796946 879.57934 -0.16414 -7.2354E-05 2.4594 0.0010841 2.2952 0.0010117 440.7993320611319 47.921 0.47992 51.603 51.334 51.814 3.6819 48 28 2 0 0 0 0.82752 1 10239 10239 0.79363 0 1 130820 + 49580 24630 30999 31013 57144 57144 0.1347332432200119 VLLVLLPN 8 Unmodified _VLLVLLPN_ 0 0 0 REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.2971496582031 2 440.796946 879.57934 -0.40481 -0.00017844 2.7996 0.0012341 2.3948 0.0010556 440.79941418008247 48.113 0.42698 51.354 51.123 51.55 3.2405 55 31 2 0 0 0 0.82752 1 10379 10379 0.79363 0 1 95807 + 49581 24630 30999 31013 57145 57145 0.1347332432200119 VLLVLLPN 8 Unmodified _VLLVLLPN_ 0 0 0 REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.298095703125 2 440.796946 879.57934 0.06485 2.8586E-05 2.0219 0.00089125 2.0867 0.00091983 440.79945487349966 24.774 1.0735 28.341 27.841 28.914 3.5667 194 125 2 0 0 0 0.82752 1 2905 2905 0.69038 0 1 106440 + 49582 24630 30999 31013 57146 57146 0.1347332432200119 VLLVLLPN 8 Unmodified _VLLVLLPN_ 0 0 0 REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|51|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.2974548339844 2 440.796946 879.57934 0.035546 1.5669E-05 2.5414 0.0011202 2.5769 0.0011359 440.7994813534215 23.464 0.62313 27.215 26.816 27.439 3.7507 98 62 2 0 0 0 0.82752 1 2626 2626 0.69038 0 1 100320 + 49583 24630 30999 31013 57147 57147 0.1347332432200119 VLLWLPVLVR 10 Unmodified _VLLWLPVLVR_ 0 0 0 ENST00000367157.4_2_1:205290701-205290866:-|nuORF ENST00000367157.4_2_1:205290701-205290866:-|nuORF ENST00000367157.4_2_1:205290701-205290866:-|nuORF MSMS UPN46_class_I_Rep_3 1 604.3991088867188 2 604.399902 1206.78525 NaN NaN NaN NaN NaN NaN NaN 59.169 1 59.169 58.669 59.669 0 0 0 0 0.53105 1 13063 13063 0 0 1 49584 6346 31000 31014 57148 57148 0.19012897501238513 VLLYIYSYV 9 Unmodified _VLLYIYSYV_ 0 0 0 L1MEd_dup8941|chr6:156908201-156908761:-|1.6091566055780806|0.0110635719655883|7.18|151.0|37|3|anti-sense L1MEd_dup8941|chr6:156908201-156908761:-|1.6091566055780806|0.0110635719655883|7.18|151.0|37|3|anti-sense L1MEd_dup8941|chr6:156908201-156908761:-|1.6091566055780806|0.0110635719655883|7.18|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_1 2 566.818359375 2 566.818076 1131.6216 NaN NaN NaN NaN NaN NaN NaN 70.761 1 74.133 73.633 74.633 3.3713 0 0 0 0.38299 1 17215 17215 4.756 0.42677 1 49585 13222 31001 31015 57149 57149 0.061052549396890754 VLMAAPRF 8 Unmodified _VLMAAPRF_ 0 0 0 REV__nc|ENSG00000091128|A4D0S4-2|LAMB4 REV__nc|ENSG00000091128|A4D0S4-2|LAMB4 MSMS UPN47_class_I_Rep_2 3 452.75665283203125 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 18.589 1 21.979 21.479 22.479 3.3898 0 0 0 0.40738 1 1596 1596 0.79363 0 1 + 49586 18015 31002 31016 57150 57150 0.04443354096190433 VLMAHYQHL 9 Unmodified _VLMAHYQHL_ 0 0 0 REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|197|2|anti-sense REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|197|2|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2880249023438 2 556.289494 1110.56443 NaN NaN NaN NaN NaN NaN NaN 93.353 1 96.758 96.258 97.258 3.4052 0 0 0 0.39428 1 23274 23274 2.0598 0.21551 1 + 49587 28914 31003 31017 57151 57151 0.013575091823440744 VLMAHYQHL 9 Unmodified _VLMAHYQHL_ 0 0 0 REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|197|2|anti-sense REV__L1P4a_dup233|chr6:121154810-121158822:-|2.1722487114816573|0.0350311049591647|5.95|151.0|197|2|anti-sense MSMS UPN48_class_I_Rep_2 6 556.2874145507812 2 556.289494 1110.56443 NaN NaN NaN NaN NaN NaN NaN 92.921 1 96.691 96.191 97.191 3.77 0 0 0 0.39428 1 22105 22105 2.0598 0 1 + 49588 28914 31003 31017 57152 57152 0.013575091823440744 VLMDRLPSL 9 Oxidation (M) _VLM(Oxidation (M))DRLPSL_ VLM(1)DRLPSL VLM(46)DRLPSL 0 0 1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN47_class_I_Rep_1 2 530.297119140625 2 530.296985 1058.57942 0.2922 0.00015496 -0.18181 -9.6413E-05 0.11039 5.8542E-05 530.2968262922667 54.4 0.85041 57.902 57.51 58.36 3.5014 80 44 2 0 0 0 0.05757 2 12273 12232;12273 45.74 18.856 1 205620 49589 3242 31004 31018 57153;57154 57154 101 0.052469562596797914 VLMDRLPSL 9 Oxidation (M) _VLM(Oxidation (M))DRLPSL_ VLM(1)DRLPSL VLM(55)DRLPSL 0 0 1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN47_class_I_Rep_2 3 530.2966918945312 2 530.296985 1058.57942 0.30881 0.00016376 -0.16812 -8.9153E-05 0.14069 7.4609E-05 530.2968169818473 54.629 0.93136 57.948 57.628 58.559 3.3187 94 49 3 0 0 0 0.034404 2 12392 12351;12392 55.235 26.74 1 209980 49590 3242 31004 31018 57155;57156 57156 101 0.052469562596797914 VLMDRLPSL 9 Oxidation (M) _VLM(Oxidation (M))DRLPSL_ VLM(1)DRLPSL VLM(57)DRLPSL 0 0 1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS UPN47_class_I_Rep_3 4 530.2965698242188 2 530.296985 1058.57942 0.3806 0.00020183 -0.23056 -0.00012227 0.15004 7.9567E-05 530.2967859030019 54.871 1.0036 58.057 57.627 58.631 3.1856 111 58 3 0 0 0 0.029742 3 12433 12433;12476;12522 57.249 43.982 1 224880 49591 3242 31004 31018 57157;57158;57159 57157 101 0.052469562596797914 VLMENIVYL 9 Oxidation (M) _VLM(Oxidation (M))ENIVYL_ VLM(1)ENIVYL VLM(54)ENIVYL 0 0 1 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS UPN47_class_I_Rep_1 2 555.2992553710938 2 555.299193 1108.58383 0.38799 0.00021545 -0.085045 -4.7225E-05 0.30294 0.00016822 555.2991216354055 71.589 1.0555 74.964 74.622 75.677 3.3751 199 82 4 0 0 0 0.037922 2 17490 17451;17490 53.833 17.706 1 774950 49592 2813 31005 31019 57160;57161 57161 90 0.03388420682586002 VLMENIVYL 9 Oxidation (M) _VLM(Oxidation (M))ENIVYL_ VLM(1)ENIVYL VLM(72)ENIVYL 0 0 1 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS UPN47_class_I_Rep_3 4 555.29931640625 2 555.299193 1108.58383 0.44853 0.00024907 -0.24628 -0.00013676 0.20225 0.00011231 555.2990521330698 71.845 1.0636 75.064 74.698 75.762 3.2188 236 84 4 0 0 0 0.0070866 3 17663 17624;17663;17699 71.922 19.654 1 935770 49593 2813 31005 31019 57162;57163;57164 57163 90 0.03388420682586002 VLMFKSRRRR 10 Unmodified _VLMFKSRRRR_ 0 0 0 MLT2B3_dup3229|chr22:40067392-40067943:-|2.988298522776234|0.0372629167114236|6.33|151.0|27|3|anti-sense MLT2B3_dup3229|chr22:40067392-40067943:-|2.988298522776234|0.0372629167114236|6.33|151.0|27|3|anti-sense MLT2B3_dup3229|chr22:40067392-40067943:-|2.988298522776234|0.0372629167114236|6.33|151.0|27|3|anti-sense MSMS UPN47_class_I_Rep_1 2 450.2745056152344 3 450.275069 1347.80338 NaN NaN NaN NaN NaN NaN NaN 85.007 1 88.598 88.098 89.098 3.5914 0 0 0 0.53105 1 21243 21243 0.77653 0.078866 1 49594 16510 31006 31020 57165 57165 0.14338709204321276 VLMGRRGVHG 10 Unmodified _VLMGRRGVHG_ 0 0 0 ENSG00000196570|ENST00000358571|PFN3 ENSG00000196570|ENST00000358571|PFN3 ENSG00000196570|ENST00000358571|PFN3 MSMS UPN46_class_I_Rep_3 1 541.388916015625 2 541.30601 1080.59747 NaN NaN NaN NaN NaN NaN NaN 53.023 1 53.023 52.523 53.523 0 0 0 0 0.53105 1 11377 11377 6.7232 0.36906 1 49595 5319 31007 31021 57166 57166 0.06039136025037806 VLMHLQAP 8 Unmodified _VLMHLQAP_ 0 0 0 REV__KIRREL2|p.V119M|1|0.5|ENSG00000126259|chr19:35858551-35858551|G/A|missense_variant REV__KIRREL2|p.V119M|1|0.5|ENSG00000126259|chr19:35858551-35858551|G/A|missense_variant MSMS UPN46_class_I_Rep_3 1 454.7556457519531 2 454.754756 907.494958 NaN NaN NaN NaN NaN NaN NaN 86.711 1 86.711 86.211 87.211 0 0 0 0 0.40738 1 20737 20737 0.79363 0 1 + 49596 23998 31008 31022 57167 57167 0.03751050233586284 VLMILPWRWDW 11 Unmodified _VLMILPWRWDW_ 0 0 0 ENST00000394735.5_1_4:106613284-106614531:-|nuORF ENST00000394735.5_1_4:106613284-106614531:-|nuORF ENST00000394735.5_1_4:106613284-106614531:-|nuORF MSMS UPN48_class_I_Rep_1 5 505.7642822265625 3 505.60408 1513.79041 NaN NaN NaN NaN NaN NaN NaN 41.714 1 45.22 44.72 45.72 3.506 0 0 0 0.38417 1 7634 7634 0.50596 0.34663 1 49597 6549 31009 31023 57168 57168 0.05406833301572078 VLMIPIQV 8 Unmodified _VLMIPIQV_ 0 0 0 REV__ENST00000262187.9_1_7:151168500-151168661:-|nuORF REV__ENST00000262187.9_1_7:151168500-151168661:-|nuORF MSMS UPN47_class_I_Rep_2 3 456.7845153808594 2 456.782982 911.55141 NaN NaN NaN NaN NaN NaN NaN 20.681 1 24.089 23.589 24.589 3.4074 0 0 0 0.40738 1 2190 2190 0.79363 0 1 + 49598 18330 31010 31024 57169 57169 0.09209678070260452 VLMLVLLKIV 10 Unmodified _VLMLVLLKIV_ 0 0 0 REV__L1MC5_dup2432|chr3:37078172-37079036:+|1.0228476594710667|0.0697617445744311|3.87|151.0|26|3|sense REV__L1MC5_dup2432|chr3:37078172-37079036:+|1.0228476594710667|0.0697617445744311|3.87|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 570.713134765625 2 570.893063 1139.77157 NaN NaN NaN NaN NaN NaN NaN 43.839 1 43.839 43.339 44.339 0 0 0 0 0.53105 1 8785 8785 0 0 1 + 49599 27076 31011 31025 57170 57170 0.2072790367781181 VLMPKVCK 8 Unmodified _VLMPKVCK_ 0 0 0 REV__L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|19|1|sense REV__L1MA4_dup6845|chr10:72773196-72775882:+|1.9849019581705525|0.02850298813126|6.12|151.0|19|1|sense MSMS UPN48_class_I_Rep_1 5 459.2703552246094 2 459.269184 916.523815 NaN NaN NaN NaN NaN NaN NaN 28.977 1 32.527 32.027 33.027 3.5499 0 0 0 0.40738 1 3959 3959 0.79363 0.10326 1 + 49600 25200 31012 31026 57171 57171 0.06221451538362999 VLMPLLRT 8 Unmodified _VLMPLLRT_ 0 0 0 MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|85|3|anti-sense MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|85|3|anti-sense MER45R_dup327|chr9:37259109-37260579:-|2.069054840231072|0.0646818655221403|5.0|151.0|85|3|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7955322265625 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 75.718 1 79.122 78.622 79.622 3.4034 0 0 0 0.40738 1 18705 18705 0.79363 0 1 49601 15998 31013 31027 57172 57172 0.10008482818830089 VLMPLMTL 8 Unmodified _VLMPLMTL_ 0 0 0 REV__AluJb_dup84424|chr12:68617775-68618061:-|2.70858860472436|0.0443698370380484|5.93|151.0|15|1|anti-sense REV__AluJb_dup84424|chr12:68617775-68618061:-|2.70858860472436|0.0443698370380484|5.93|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 459.2623596191406 2 459.263568 916.512582 -0.45689 -0.00020983 0.017239 7.917E-06 -0.43965 -0.00020192 459.2633118482956 37.912 0.81804 41.3 40.899 41.717 3.3879 124 67 2 0 0 0 0.82752 1 7339 7339 5.7604 0 1 191350 + 49602 16931 31014 31028 57173 57173 0.050986294442395774 VLMSLVIEM 9 2 Oxidation (M) _VLM(Oxidation (M))SLVIEM(Oxidation (M))_ VLM(1)SLVIEM(1) VLM(61)SLVIEM(61) 0 0 2 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-MSMS UPN46_class_I_Rep_3 1 533.7799072265625 2 533.779779 1065.545 0.27916 0.00014901 0.099766 5.3253E-05 0.37892 0.00020226 533.7797213428408 65.741 0.45419 65.741 65.472 65.926 0 81 48 2 0 0 0 0.023254 2 14876 14842;14876 61.357 15.337 1 268100 49603 4112 31015 31029 57174;57175 57175 134;135 0.01485372056572487 VLMSLVIEM 9 2 Oxidation (M) _VLM(Oxidation (M))SLVIEM(Oxidation (M))_ VLM(1)SLVIEM(1) VLM(55)SLVIEM(55) 0 0 2 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-MSMS UPN47_class_I_Rep_1 2 533.7799682617188 2 533.779779 1065.545 0.38049 0.0002031 0.15442 8.2426E-05 0.53491 0.00028552 533.7797907311209 61.529 0.80033 64.897 64.478 65.278 3.3681 103 56 2 0 0 0 0.035561 1 14404 14404 54.774 8.7526 1 249900 49604 4112 31015 31029 57176 57176 134;135 0.01485372056572487 VLMSLVIEM 9 2 Oxidation (M) _VLM(Oxidation (M))SLVIEM(Oxidation (M))_ VLM(1)SLVIEM(1) VLM(55)SLVIEM(55) 0 0 2 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-MSMS UPN47_class_I_Rep_3 4 533.7801513671875 2 533.779779 1065.545 0.35643 0.00019026 -0.35803 -0.00019111 -0.0015954 -8.5158E-07 533.7797998423259 61.701 0.75533 64.867 64.579 65.334 3.1667 125 55 3 0 0 0 0.035561 1 14620 14620 54.774 8.7526 1 352850 49605 4112 31015 31029 57177 57177 134;135 0.01485372056572487 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(64)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MSMS UPN46_class_I_Rep_3 1 539.2979125976562 2 539.29665 1076.57875 NaN NaN NaN NaN NaN NaN NaN 57.134 1 57.134 56.634 57.634 0 0 0 0 0.00058741 1 12502 12502 63.961 20.102 1 49606 2096 31016 31030 57178 57178 71 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(44)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MSMS UPN46_class_I_Rep_3 1 539.297607421875 2 539.29665 1076.57875 NaN NaN NaN NaN NaN NaN NaN 57.269 1 57.269 56.769 57.769 0 0 0 0 0.031663 1 12537 12537 43.858 11.553 1 49607 2096 31016 31030 57179 57179 71 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(60)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 539.296875 2 539.29665 1076.57875 0.27331 0.0001474 0.23763 0.00012815 0.51094 0.00027555 539.2967724772997 56.991 0.28318 56.991 56.856 57.139 0 41 32 2 0 0 0 0.032377 1 12463 12463 60.074 20.117 1 346980 49608 2096 31016 31030 57180 57180 71 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(74)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 539.2965087890625 2 539.29665 1076.57875 0.28645 0.00015448 0.02746 1.4809E-05 0.31391 0.00016929 539.2965533810009 51.302 1.0994 54.895 54.45 55.549 3.5932 93 54 3 0 0 0 0.0065234 6 11280 11220;11239;11280;11323;11368;11381 74.2 20.436 1 277240 49609 2096 31016 31030 57181;57182;57183;57184;57185;57186 57183 71 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(77)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 539.2969970703125 2 539.29665 1076.57875 0.45704 0.00024648 0.025517 1.3761E-05 0.48255 0.00026024 539.2964421281221 51.589 1.0339 54.927 54.42 55.454 3.3386 106 51 3 0 0 0 0.0058741 4 11399 11399;11442;11482;11497 76.825 26.892 1 331370 49610 2096 31016 31030 57187;57188;57189;57190 57187 71 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(48)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 539.2960205078125 2 539.29665 1076.57875 0.46977 0.00025334 -0.64596 -0.00034836 -0.17619 -9.502E-05 539.2961826537975 55.525 0.74692 58.835 58.773 59.52 3.3102 54 44 2 0 0 0 0.052902 1 12735 12735 47.749 11.622 1 76380 49611 2096 31016 31030 57191 57191 71 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(89)TEDIKL 0 0 1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 ENST00000442406.5_1_3:184038690-184052693:+|nuORF ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 539.7884521484375 2 539.29665 1076.57875 0.51397 0.00027718 -0.11426 -6.1618E-05 0.39971 0.00021556 539.2964257661125 51.676 1.0849 54.881 54.411 55.496 3.2055 114 60 3 0 0 0 0.0063213 4 11606 11435;11480;11564;11606 89.401 30.722 1 369930 49612 2096 31016 31030 57192;57193;57194;57195 57195 71 0.04352116819973162 VLMVGLNK 8 Unmodified _VLMVGLNK_ 0 0 0 ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|217|3|anti-sense ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|217|3|anti-sense ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|217|3|anti-sense MSMS UPN48_class_I_Rep_3 7 437.2653503417969 2 437.264956 872.515359 NaN NaN NaN NaN NaN NaN NaN 24.638 1 28.407 27.907 28.907 3.769 0 0 0 0.40738 1 2881 2881 0.79363 0 1 49613 7725 31017 31031 57196 57196 0.0740022089340755 VLMWRLLK 8 Unmodified _VLMWRLLK_ 0 0 0 TAP2|p.T462Hfs*21|1|0.2|ENSG00000204267|chr6:32830695-32830696|-/G|frameshift_variant;nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 TAP2|p.T462Hfs*21|1|0.2|ENSG00000204267|chr6:32830695-32830696|-/G|frameshift_variant TAP2|p.T462Hfs*21|1|0.2|ENSG00000204267|chr6:32830695-32830696|-/G|frameshift_variant MSMS UPN48_class_I_Rep_1 5 529.83056640625 2 529.830798 1057.64704 NaN NaN NaN NaN NaN NaN NaN 67.742 1 71.194 70.694 71.694 3.4517 0 0 0 0.40738 1 15593 15593 0.79363 0 1 49614 5511 31018 31032 57197 57197 0.1205245098112755 VLNCQHHLSG 10 Unmodified _VLNCQHHLSG_ 0 0 0 ENST00000465732.5_1_21:44488493-44493403:-|nuORF ENST00000465732.5_1_21:44488493-44493403:-|nuORF ENST00000465732.5_1_21:44488493-44493403:-|nuORF MSMS UPN48_class_I_Rep_1 5 554.2725830078125 2 554.271832 1106.52911 NaN NaN NaN NaN NaN NaN NaN 81.504 1 85.066 84.566 85.566 3.5624 0 0 0 0.53105 1 19436 19436 1.4819 0 1 49615 6892 31019 31033 57198 57198 -0.019891533454710952 VLNFLFLFFKK 11 Unmodified _VLNFLFLFFKK_ 0 0 0 LOR1-int_dup248|chr2:230524387-230525442:+|3.228227524014054|0.2439487961917645|3.73|151.0|49|1|anti-sense LOR1-int_dup248|chr2:230524387-230525442:+|3.228227524014054|0.2439487961917645|3.73|151.0|49|1|anti-sense LOR1-int_dup248|chr2:230524387-230525442:+|3.228227524014054|0.2439487961917645|3.73|151.0|49|1|anti-sense MSMS UPN48_class_I_Rep_2 6 472.6175537109375 3 472.619836 1414.83768 NaN NaN NaN NaN NaN NaN NaN 93.4 1 97.17 96.67 97.67 3.77 0 0 0 0.38417 1 22209 22209 2.8433 0.4085 1 49616 15498 31020 31034 57199 57199 0.14685435844194217 VLNFLVYD 8 Unmodified _VLNFLVYD_ 0 0 0 L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|118|2|anti-sense L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|118|2|anti-sense L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_3 4 491.7637023925781 2 491.765843 981.517133 NaN NaN NaN NaN NaN NaN NaN 23.58 1 26.931 26.431 27.431 3.3509 0 0 0 0.40643 1 3023 3023 2.0598 0 1 49617 8982 31021 31035 57200 57200 0.02563553182983469 VLNFLVYD 8 Unmodified _VLNFLVYD_ 0 0 0 L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|118|2|anti-sense L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|118|2|anti-sense L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_3 4 491.7630310058594 2 491.765843 981.517133 NaN NaN NaN NaN NaN NaN NaN 23.656 1 27.007 26.507 27.507 3.3509 0 0 0 0.40643 1 3046 3046 2.0598 0 1 49618 8982 31021 31035 57201 57201 0.02563553182983469 VLNIKHLE 8 Unmodified _VLNIKHLE_ 0 0 0 REV__ENST00000567385.5_1_16:48244807-48265838:-|nuORF REV__ENST00000567385.5_1_16:48244807-48265838:-|nuORF MSMS UPN48_class_I_Rep_2 6 483.2911682128906 2 483.292559 964.570566 NaN NaN NaN NaN NaN NaN NaN 33.873 1 37.534 37.034 38.034 3.6607 0 0 0 0.40746 1 5395 5395 0.69038 0 1 + 49619 18724 31022 31036 57202 57202 0.08686350685502475 VLNIWHSY 8 Unmodified _VLNIWHSY_ 0 0 0 L1ME1_dup1274|chr1:110887364-110887847:-|1.2284372468014102|0.0142477985608812|6.43|151.0|24|1|anti-sense L1ME1_dup1274|chr1:110887364-110887847:-|1.2284372468014102|0.0142477985608812|6.43|151.0|24|1|anti-sense L1ME1_dup1274|chr1:110887364-110887847:-|1.2284372468014102|0.0142477985608812|6.43|151.0|24|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.2695922851562 2 516.269084 1030.52362 0.3633 0.00018756 -0.46086 -0.00023793 -0.097557 -5.0365E-05 516.2686592978188 51.786 0.59901 55.425 55.144 55.743 3.639 143 64 3 0 0 0 0.82752 1 10647 10647 19.439 1.304 1 562190 49620 12204 31023 31037 57203 57203 0.009574911343861459 VLNKLTVYT 9 Unmodified _VLNKLTVYT_ 0 0 0 nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 nc|ENSG00000104763|Q13510-3|ASAH1 nc|ENSG00000104763|Q13510-3|ASAH1 MULTI-SECPEP UPN47_class_I_Rep_3 4 526.292724609375 2 525.813325 1049.6121 0.43289 0.00022762 -0.51513 -0.00027086 -0.08224 -4.3243E-05 525.8130708172449 51.869 0.62175 55.074 54.911 55.533 3.2055 55 35 2 0 0 0 0.12321 1 11719 11719 3.9444 0 1 64127 49621 1702 31024 31038 57204 57204 0.08927486654170025 VLNKNDRV 8 Unmodified _VLNKNDRV_ 0 0 0 REV__ENST00000318782.8_1_16:3023261-3023465:+|nuORF REV__ENST00000318782.8_1_16:3023261-3023465:+|nuORF MSMS UPN47_class_I_Rep_1 2 479.27777099609375 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.862 1 77.248 76.748 77.748 3.3861 0 0 0 0.40643 1 18154 18154 2.0598 0 1 + 49622 21727 31025 31039 57205 57205 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2774658203125 2 479.277441 956.540328 0.24145 0.00011572 -0.088556 -4.2443E-05 0.1529 7.3281E-05 479.27730551056476 77.856 0.5086 77.856 77.621 78.13 0 142 56 3 0 0 0 0.82752 1 18238 18238 4.756 0.42677 1 589660 49623 8255 31026 31040 57206 57206 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2773742675781 2 479.277441 956.540328 0.24321 0.00011657 -0.094801 -4.5436E-05 0.14841 7.1129E-05 479.27729385878115 78.546 0.99577 78.546 78.108 79.104 0 211 106 3 0 0 0 0.82752 2 18407 18407;18450 4.756 0.42677 1 772180 49624 8255 31026 31040 57207;57208 57207 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.2771911621094 2 479.277441 956.540328 0.24703 0.0001184 -0.18119 -8.684E-05 0.065843 3.1557E-05 479.2772475079895 79.584 1.1024 79.584 79.333 80.436 0 201 105 3 0 0 0 0.82752 2 18673 18673;18858 4.756 0.42677 1 479680 49625 8255 31026 31040 57209;57210 57209 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2774353027344 2 479.277441 956.540328 0.11705 5.6102E-05 -0.23064 -0.00011054 -0.11359 -5.4441E-05 479.2771831640305 73.243 1.1706 76.629 75.892 77.063 3.3861 121 91 2 0 0 0 0.82752 1 17906 17906 4.756 0.42677 1 114560 49626 8255 31026 31040 57211 57211 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2774658203125 2 479.277441 956.540328 0.13027 6.2437E-05 -0.14612 -7.0031E-05 -0.015844 -7.5937E-06 479.2773307394309 75.361 2.1111 78.764 77.605 79.716 3.4034 438 194 3 0 0 0 0.82752 3 18454 18454;18794;18872 4.756 2.3027 1 595600 49627 8255 31026 31040 57212;57213;57214 57212 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.2773132324219 2 479.277441 956.540328 0.13684 6.5582E-05 -0.37207 -0.00017833 -0.23524 -0.00011274 479.2771306136768 76.445 0.32669 79.86 79.687 80.014 3.4149 58 29 3 0 0 0 0.82752 2 18913 18913;18950 2.3027 0.24298 1 364230 49628 8255 31026 31040 57215;57216 57215 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.27740478515625 2 479.277441 956.540328 0.18162 8.7046E-05 -0.13935 -6.6786E-05 0.042271 2.026E-05 479.27737299842715 75.396 2.8702 78.708 77.708 80.578 3.3127 434 295 3 0 0 0 0.82752 3 18555 18555;18782;18828 4.756 2.3027 1 542900 49629 8255 31026 31040 57217;57218;57219 57217 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 479.2771301269531 2 479.277441 956.540328 0.092361 4.4267E-05 -0.24373 -0.00011681 -0.15136 -7.2545E-05 479.2772277139433 75.907 1.5235 79.165 78.931 80.454 3.2573 232 157 3 0 0 0 0.82752 2 18832 18832;18867 4.756 0.42677 1 653890 49630 8255 31026 31040 57220;57221 57220 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 479.2792663574219 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 74.65 1 78.14 77.64 78.64 3.49 0 0 0 0.4044 1 17648 17648 4.756 0 1 49631 8255 31026 31040 57222 57222 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 479.29705810546875 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 75.278 1 78.777 78.277 79.277 3.4996 0 0 0 0.4044 1 17825 17825 4.756 0 1 49632 8255 31026 31040 57223 57223 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 479.2772521972656 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 76.091 1 79.59 79.09 80.09 3.4996 0 0 0 0.4044 1 18063 18063 4.756 0 1 49633 8255 31026 31040 57224 57224 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 479.27734375 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 76.241 1 79.751 79.251 80.251 3.5102 0 0 0 0.40625 1 18104 18104 2.3027 0.24298 1 49634 8255 31026 31040 57225 57225 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.2771911621094 2 479.277441 956.540328 0.22557 0.00010811 -0.13987 -6.7035E-05 0.085704 4.1076E-05 479.27724310322634 75.451 0.14056 79.053 78.955 79.096 3.6012 32 16 2 0 0 0 0.82752 1 17775 17775 4.756 0.42677 1 259980 49635 8255 31026 31040 57226 57226 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.27740478515625 2 479.277441 956.540328 0.26784 0.00012837 1.3621 0.00065283 1.63 0.0007812 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.82752 1 17811 17811 4.756 0.42677 1 496720 49636 8255 31026 31040 57227 57227 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 479.277441 956.540328 0.24145 0.00011572 -0.088556 -4.2443E-05 0.1529 7.3281E-05 479.27730551056476 77.856 0.5086 77.856 77.621 78.13 0 0 0 NaN 4.756 142 56 3 NaN NaN NaN NaN 0 NaN NaN 0 589660 49637 8255 31026 31040 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 479.277441 956.540328 0.092361 4.4267E-05 -0.24373 -0.00011681 -0.15136 -7.2545E-05 479.2772277139433 75.907 1.5235 79.165 78.931 80.454 3.2573 0.056028 -9.5216E-06 NaN 4.756 232 157 3 NaN NaN NaN NaN 0 NaN NaN 0 653890 49638 8255 31026 31040 0.06031992020314192 VLNKQNKN 8 Unmodified _VLNKQNKN_ 0 0 0 HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|36|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 479.277441 956.540328 0.22557 0.00010811 -0.13987 -6.7035E-05 0.085704 4.1076E-05 479.27724310322634 75.451 0.14056 79.053 78.955 79.096 3.6012 -0.056028 9.0033E-05 NaN 4.756 32 16 2 NaN NaN NaN NaN 0 NaN NaN 0 259980 49639 8255 31026 31040 0.06031992020314192 VLNKRIVKLI 10 Unmodified _VLNKRIVKLI_ 0 0 0 REV__nc|ENSG00000080824|P07900-2|HSP90AA1 REV__nc|ENSG00000080824|P07900-2|HSP90AA1 MSMS UPN46_class_I_Rep_3 1 598.4183349609375 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 72.556 1 72.556 72.056 73.056 0 0 0 0 0.53105 1 16776 16776 0.40072 0 1 + 49640 31944 31027 31041 57228 57228 0.2279968490427109 VLNLDEVECS 10 Unmodified _VLNLDEVECS_ 0 0 0 L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|78|1|anti-sense L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|78|1|anti-sense L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|78|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.7845458984375 2 560.763171 1119.51179 NaN NaN NaN NaN NaN NaN NaN 50.592 1 53.809 53.309 54.309 3.2163 0 0 0 0.53105 1 11190 11190 2.4985 0.19575 1 49641 10593 31028 31042 57229 57229 -0.04318538461780008 VLNLHNKKK 9 Unmodified _VLNLHNKKK_ 0 0 0 L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|99|3|sense L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|99|3|sense L1MA5_dup818|chr3:87921439-87924276:-|2.215119202850881|0.0062875886946501|8.46|136.0|99|3|sense MSMS UPN48_class_I_Rep_2 6 547.3455200195312 2 547.345658 1092.67676 NaN NaN NaN NaN NaN NaN NaN 94.406 1 98.182 97.682 98.682 3.7761 0 0 0 0.4007 1 22446 22446 0.52476 0 1 49642 9924 31029 31043 57230 57230 0.13413106250845885 VLNLQEIVDKI 11 Unmodified _VLNLQEIVDKI_ 0 0 0 REV__ENST00000560420.1_1_14:24606925-24607473:+|nuORF REV__ENST00000560420.1_1_14:24606925-24607473:+|nuORF MSMS UPN46_class_I_Rep_3 1 642.3842163085938 2 642.382103 1282.74965 NaN NaN NaN NaN NaN NaN NaN 91.488 1 91.488 90.988 91.988 0 0 0 0 0.38417 1 22103 22103 2.7352 1.0826 1 + 49643 18029 31030 31044 57231 57231 0.11958770462933899 VLNLRLKLA 9 Unmodified _VLNLRLKLA_ 0 0 0 REV__nc|ENSG00000184634|Q93074-3|MED12 REV__nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS UPN48_class_I_Rep_3 7 520.8550415039062 2 520.352951 1038.69135 0.38895 0.00020239 -0.16859 -8.7727E-05 0.22036 0.00011467 520.3527312939021 108.62 0.56184 112.3 112.25 112.81 3.6751 93 63 2 0 0 0 0.50088 1 25844 25844 0.52476 0 1 14865000 + 49644 20824 31031 31045 57232 57232 0.17355178398975113 VLNNDYLEL 9 Unmodified _VLNNDYLEL_ 0 0 0 L1MC5a_dup7773|chr7:139056708-139057066:+|1.3984925508944654|0.050017810307097|4.81|151.0|18|1|anti-sense L1MC5a_dup7773|chr7:139056708-139057066:+|1.3984925508944654|0.050017810307097|4.81|151.0|18|1|anti-sense L1MC5a_dup7773|chr7:139056708-139057066:+|1.3984925508944654|0.050017810307097|4.81|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.7811889648438 2 546.782222 1091.54989 0.45242 0.00024738 -0.56057 -0.00030651 -0.10815 -5.9133E-05 546.7817257723534 37.333 0.57388 41.035 40.792 41.366 3.7022 108 61 2 0 0 0 0.49026 1 6454 6454 1.6526 0 1 162800 49645 11761 31032 31046 57233 57233 0.007777155151643456 VLNNLKWA 8 Unmodified _VLNNLKWA_ 0 0 0 REV__L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|15|1|sense REV__L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 479.27783203125 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 74.602 1 78.092 77.592 78.592 3.49 0 0 0 0.4044 1 17635 17635 4.756 0 1 + 49646 28850 31033 31047 57234 57234 0.06434081514032641 VLNNVVIHL 9 Unmodified _VLNNVVIHL_ 0 0 0 ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MULTI-MSMS UPN47_class_I_Rep_1 2 510.8138427734375 2 510.813659 1019.61277 0.27296 0.00013943 0.32175 0.00016436 0.59471 0.00030379 510.8136396929414 59.819 0.24276 63.217 63.025 63.268 3.3982 17 13 3 0 0 0 0.30667 1 13919 13919 13.508 4.9146 1 46415 49647 5368 31034 31048 57235 57235 0.10374326093892705 VLNNVVIHL 9 Unmodified _VLNNVVIHL_ 0 0 0 ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MSMS UPN47_class_I_Rep_3 4 510.8137512207031 2 510.813659 1019.61277 NaN NaN NaN NaN NaN NaN NaN 60.295 1 63.46 62.96 63.96 3.1651 0 0 0 0.38299 1 14149 14149 4.756 0.42677 1 49648 5368 31034 31048 57236 57236 0.10374326093892705 VLNQILLV 8 Unmodified _VLNQILLV_ 0 0 0 L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 456.7427062988281 2 456.299853 910.585153 -0.48942 -0.00022332 1.8866 0.00086084 1.3971 0.00063752 456.3004877047627 38.812 0.051342 42.191 42.144 42.195 3.3785 5 3 2 0 0 0 0.72333 1 7547 7547 0.79363 0 1 18369 49649 11233 31035 31049 57237 57237 0.1262842283366581 VLNQILLV 8 Unmodified _VLNQILLV_ 0 0 0 L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 456.299853 910.585153 0.058517 2.6701E-05 2.7579 0.0012584 2.8164 0.0012851 456.3009990246318 39.001 1.2322 42.506 42.032 43.264 3.5048 0.12075 2.5244E-05 NaN 0.79363 202 114 2 NaN NaN NaN NaN 0 NaN NaN 0 141960 49650 11233 31035 31049 0.1262842283366581 VLNQILLV 8 Unmodified _VLNQILLV_ 0 0 0 L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 456.299853 910.585153 0.12458 5.6846E-05 2.8068 0.0012807 2.9314 0.0013376 456.30106059815114 38.628 1.1333 42.344 41.863 42.997 3.7164 -0.040799 6.991E-05 NaN 0.79363 152 113 2 NaN NaN NaN NaN 0 NaN NaN 0 159430 49651 11233 31035 31049 0.1262842283366581 VLNQILLV 8 Unmodified _VLNQILLV_ 0 0 0 L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense L1MC2_dup2070|chr5:175927764-175930267:+|3.8423363161298663|0.2200981733158593|4.13|151.0|110|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 456.299853 910.585153 0.087728 4.003E-05 2.5462 0.0011618 2.6339 0.0012018 456.3009319733692 38.844 0.71629 42.499 42.408 43.124 3.6557 0.11428 -0.00016794 NaN 0.79363 117 64 2 NaN NaN NaN NaN 0 NaN NaN 0 140800 49652 11233 31035 31049 0.1262842283366581 VLNQTTRL 8 Unmodified _VLNQTTRL_ 0 0 0 nc|ENSG00000091879|O15123-2|ANGPT2;ENSG00000091879|ENST00000629816|ANGPT2;nc|ENSG00000091879|O15123|ANGPT2 nc|ENSG00000091879|O15123-2|ANGPT2 nc|ENSG00000091879|O15123-2|ANGPT2 MSMS UPN46_class_I_Rep_3 1 472.7793273925781 2 472.779816 943.545079 NaN NaN NaN NaN NaN NaN NaN 21.392 1 21.392 20.892 21.892 0 0 0 0 0.40746 1 2384 2384 0.69038 0 1 49653 1380 31036 31050 57238 57238 0.07104876163066365 VLNQVAEV 8 Unmodified _VLNQVAEV_ 0 0 0 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4 MULTI-MSMS UPN47_class_I_Rep_1 2 436.2473449707031 2 436.247818 870.481082 0.019272 8.4073E-06 -0.29572 -0.00012901 -0.27645 -0.0001206 436.2475075537805 63.946 0.48136 67.302 67.087 67.569 3.3557 55 38 2 0 0 0 0.82752 1 15128 15128 20.454 2.3073 1 110310 + 49654 19644 31037 31051 57239 57239 0.04066096006135922 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MSMS UPN46_class_I_Rep_3 1 470.27215576171875 2 470.272158 938.529764 NaN NaN NaN NaN NaN NaN NaN 86.849 1 86.849 86.349 87.349 0 0 0 0 0.4044 1 20780 20780 4.756 0 1 49655 4638 31038 31052 57240 57240 0.058040093658974 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MSMS UPN46_class_I_Rep_3 1 470.2723693847656 2 470.272158 938.529764 NaN NaN NaN NaN NaN NaN NaN 87.004 1 87.004 86.504 87.504 0 0 0 0 0.4044 1 20826 20826 4.756 0 1 49656 4638 31038 31052 57241 57241 0.058040093658974 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS UPN47_class_I_Rep_2 3 470.27215576171875 2 470.272158 938.529764 0.15321 7.2049E-05 -0.19623 -9.2282E-05 -0.043023 -2.0233E-05 470.2719451040926 83.284 0.66632 86.695 86.415 87.081 3.4116 175 81 3 0 0 0 0.82752 1 20801 20801 2.3027 0 1 289840 49657 4638 31038 31052 57242 57242 0.058040093658974 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS UPN47_class_I_Rep_3 4 470.2721252441406 2 470.272158 938.529764 0.012672 5.9591E-06 -0.070731 -3.3263E-05 -0.058059 -2.7304E-05 470.2719988138006 83.281 0.63078 86.631 86.38 87.011 3.35 153 71 3 0 0 0 0.82752 1 20854 20854 4.756 0 1 241770 49658 4638 31038 31052 57243 57243 0.058040093658974 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS UPN48_class_I_Rep_1 5 470.27166748046875 2 470.272158 938.529764 0.099039 4.6575E-05 -0.093813 -4.4118E-05 0.0052263 2.4578E-06 470.27201746650456 83.023 0.61546 86.61 86.311 86.926 3.5871 114 66 2 0 0 0 0.82752 1 19894 19894 2.3027 0 1 308940 49659 4638 31038 31052 57244 57244 0.058040093658974 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS UPN48_class_I_Rep_2 6 470.2720947265625 2 470.272158 938.529764 0.20396 9.5919E-05 -0.17864 -8.4011E-05 0.025322 1.1908E-05 470.2719776727439 82.956 0.70031 86.625 86.301 87.001 3.669 164 87 2 0 0 0 0.82752 1 19672 19672 4.756 0 1 424140 49660 4638 31038 31052 57245 57245 0.058040093658974 VLNRQNVP 8 Unmodified _VLNRQNVP_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS UPN48_class_I_Rep_3 7 470.2720031738281 2 470.272158 938.529764 0.23272 0.00010944 -0.29232 -0.00013747 -0.059597 -2.8027E-05 470.2719431981355 82.941 0.68389 86.647 86.372 87.056 3.7066 196 91 3 0 0 0 0.82752 1 19626 19626 4.756 0 1 367930 49661 4638 31038 31052 57246 57246 0.058040093658974 VLNRSLPI 8 Unmodified _VLNRSLPI_ 0 0 0 REV__Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|6|1|sense REV__Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 456.30078125 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 40.98 1 44.486 43.986 44.986 3.506 0 0 0 0.40472 1 7415 7415 4.3292 0 1 + 49662 32334 31039 31053 57247 57247 0.10114368031076992 VLNRSLWA 8 Unmodified _VLNRSLWA_ 0 0 0 REV__L1PA10_dup2999|chr7:92887021-92889845:-|1.840429013878608|0.003555049168435|9.02|150.0|9|1|sense REV__L1PA10_dup2999|chr7:92887021-92889845:-|1.840429013878608|0.003555049168435|9.02|150.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 479.779052734375 2 479.777077 957.5396 NaN NaN NaN NaN NaN NaN NaN 73.904 1 77.29 76.79 77.79 3.3861 0 0 0 0.40604 1 18166 18166 2.5775 0.27475 1 + 49663 28960 31040 31054 57248 57248 0.05913197371262413 VLNSGPQVIRR 11 Unmodified _VLNSGPQVIRR_ 0 0 0 AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 619.869873046875 2 619.870028 1237.7255 0.65569 0.00040644 -1.2006 -0.0007442 -0.54489 -0.00033776 619.8692492638636 88.718 0.26215 88.718 88.645 88.907 0 33 27 2 0 0 0 0.67264 1 21315 21315 1.1933 0.12188 1 224430 49664 366 31041 31055 57249 57249 0.11614974819894996 VLNSGPQVIRR 11 Unmodified _VLNSGPQVIRR_ 0 0 0 AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense AluSz_dup86079|chr17:29742640-29742934:-|1.2012800644239143|0.1075947609572051|3.48|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 619.8699951171875 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 88.16 1 88.16 87.66 88.66 0 0 0 0 0.38417 1 21159 21159 1.1933 0.66858 1 49665 366 31041 31055 57250 57250 0.11614974819894996 VLNTLTQTR 9 Unmodified _VLNTLTQTR_ 0 0 0 REV__Tigger1_dup9066|chr12:42182888-42184322:+|1.398413271128398|0.0421008313437213|5.05|151.0|97|3|anti-sense REV__Tigger1_dup9066|chr12:42182888-42184322:+|1.398413271128398|0.0421008313437213|5.05|151.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.3035278320312 2 523.303655 1044.59276 0.32619 0.00017069 -0.5547 -0.00029028 -0.22852 -0.00011958 523.3032355809037 77.798 0.98449 81.227 80.525 81.509 3.4289 147 91 2 0 0 0 0.50088 1 19364 19364 0.52476 0 1 203310 + 49666 32557 31042 31056 57251 57251 0.07224530363259873 VLNTLTQTR 9 Unmodified _VLNTLTQTR_ 0 0 0 REV__Tigger1_dup9066|chr12:42182888-42184322:+|1.398413271128398|0.0421008313437213|5.05|151.0|97|3|anti-sense REV__Tigger1_dup9066|chr12:42182888-42184322:+|1.398413271128398|0.0421008313437213|5.05|151.0|97|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.3037719726562 2 523.303655 1044.59276 0.088594 4.6361E-05 -0.024845 -1.3002E-05 0.063749 3.336E-05 523.3035115597612 79.677 1.4533 83.033 82.138 83.591 3.3554 344 160 3 0 0 0 0.47493 2 19721 19721;19900 3.2813 0 1 405110 + 49667 32557 31042 31056 57252;57253 57252 0.07224530363259873 VLNTLTQTR 9 Unmodified _VLNTLTQTR_ 0 0 0 REV__Tigger1_dup9066|chr12:42182888-42184322:+|1.398413271128398|0.0421008313437213|5.05|151.0|97|3|anti-sense REV__Tigger1_dup9066|chr12:42182888-42184322:+|1.398413271128398|0.0421008313437213|5.05|151.0|97|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.6778564453125 2 523.303655 1044.59276 0.45913 0.00024026 -0.26879 -0.00014066 0.19034 9.9604E-05 523.3033717303391 79.426 1.4759 83.068 81.975 83.451 3.6423 365 181 3 0 0 0 0.47493 1 18642 18642 3.2813 0 1 426850 + 49668 32557 31042 31056 57254 57254 0.07224530363259873 VLNVGKDNYL 10 Unmodified _VLNVGKDNYL_ 0 0 0 REV__L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|119|3|sense REV__L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|119|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 567.8114624023438 2 567.811313 1133.60807 0.49335 0.00028013 -0.63885 -0.00036275 -0.14551 -8.262E-05 567.8108489825768 50.159 0.5192 53.385 53.191 53.71 3.2262 44 28 2 0 0 0 0.54148 1 11048 11048 6.6304 1.7334 1 96510 + 49669 25037 31043 31057 57255 57255 0.04661397160452907 VLNVQSRGK 9 Unmodified _VLNVQSRGK_ 0 0 0 REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|15|1|sense REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 500.79876708984375 2 500.79854 999.582528 0.25089 0.00012564 -0.49739 -0.00024909 -0.2465 -0.00012345 500.79815331144584 85.429 0.52788 89.02 88.783 89.311 3.5914 100 71 2 0 0 0 0.46434 1 21310 21310 4.3292 0 1 159740 + 49670 24224 31044 31058 57256 57256 0.08271967428709104 VLPEAEKKDRK 11 Unmodified _VLPEAEKKDRK_ 0 0 0 REV__ENSG00000173269|ENST00000372027|MMRN2 REV__ENSG00000173269|ENST00000372027|MMRN2 MULTI-MSMS UPN48_class_I_Rep_2 6 438.25750732421875 3 438.257626 1311.75105 0.15669 6.867E-05 -0.19193 -8.4116E-05 -0.035245 -1.5446E-05 438.25751355780585 25.31 0.42934 28.946 28.68 29.11 3.6363 68 49 2 0 0 0 0.51094 1 3075 3075 7.4771 0 1 119720 + 49671 20482 31045 31059 57257 57257 0.10764404551696316 VLPEVAALRER 11 Unmodified _VLPEVAALRER_ 0 0 0 HERVK22-int_dup380|chr15:49839371-49844484:+|10.340074952128136|0.0514195401088533|7.65|151.0|256|2|anti-sense HERVK22-int_dup380|chr15:49839371-49844484:+|10.340074952128136|0.0514195401088533|7.65|151.0|256|2|anti-sense HERVK22-int_dup380|chr15:49839371-49844484:+|10.340074952128136|0.0514195401088533|7.65|151.0|256|2|anti-sense MSMS UPN48_class_I_Rep_3 7 626.8713989257812 2 626.872237 1251.72992 NaN NaN NaN NaN NaN NaN NaN 60.099 1 63.616 63.116 64.116 3.5169 0 0 0 0.38417 1 13174 13174 4.5289 1.7937 1 49672 8288 31046 31060 57258 57258 0.11412439242826622 VLPFLLRR 8 Unmodified _VLPFLLRR_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1;L1MD1_dup2701|chr6:170381165-170382142:+|2.921962868541698|0.2770769515129631|3.4|151.0|71|3|anti-sense;nc|ENSG00000095564|O14981-2|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MSMS UPN47_class_I_Rep_2 3 507.3338317871094 2 507.334562 1012.65457 NaN NaN NaN NaN NaN NaN NaN 72.832 1 76.129 75.629 76.629 3.2971 0 0 0 0.40404 1 17874 17874 5.2307 0 1 49673 1413 31047 31061 57259 57259 0.14874926573088487 VLPGHFNTF 9 Unmodified _VLPGHFNTF_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS UPN48_class_I_Rep_1 5 516.269287109375 2 516.269084 1030.52362 0.2677 0.0001382 -0.052161 -2.6929E-05 0.21554 0.00011128 516.2687801914768 51.938 0.69288 55.461 55.146 55.839 3.5227 117 72 3 0 0 0 0.15122 2 10767 10731;10767 25.399 7.2643 1 498800 49674 4746 31048 31062 57260;57261 57261 0.009574911343634085 VLPGHFNTF 9 Unmodified _VLPGHFNTF_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS UPN48_class_I_Rep_2 6 516.2692260742188 2 516.269084 1030.52362 0.3633 0.00018756 -0.46086 -0.00023793 -0.097557 -5.0365E-05 516.2686592978188 51.786 0.59901 55.425 55.144 55.743 3.639 143 64 3 0 0 0 0.15122 3 10731 10683;10694;10731 25.399 7.2643 1 562190 49675 4746 31048 31062 57262;57263;57264 57264 0.009574911343634085 VLPGHFNTF 9 Unmodified _VLPGHFNTF_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS UPN48_class_I_Rep_3 7 516.2686157226562 2 516.269084 1030.52362 0.21943 0.00011329 -0.39539 -0.00020413 -0.17596 -9.0841E-05 516.2687606733679 51.846 0.66599 55.444 55.183 55.849 3.5979 121 75 2 0 0 0 0.10817 3 10675 10624;10675;10711 32.305 7.6316 1 576830 49676 4746 31048 31062 57265;57266;57267 57266 0.009574911343634085 VLPIIDFWS 9 Unmodified _VLPIIDFWS_ 0 0 0 REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|237|3|anti-sense MSMS UPN48_class_I_Rep_3 7 544.8131103515625 2 545.302593 1088.59063 NaN NaN NaN NaN NaN NaN NaN 21.254 1 24.92 24.42 25.42 3.6667 0 0 0 0.39428 1 1964 1964 2.0598 0 1 + 49677 24827 31049 31063 57268 57268 0.04988101625440322 VLPLAWLLS 9 Unmodified _VLPLAWLLS_ 0 0 0 LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|58|3|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|58|3|sense LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|58|3|sense MSMS UPN47_class_I_Rep_1 2 506.31378173828125 2 506.315503 1010.61645 NaN NaN NaN NaN NaN NaN NaN 47.682 1 51.377 50.877 51.877 3.6951 0 0 0 0.26661 1 10220 10220 12.532 0 1 49678 15662 31050 31064 57269 57269 0.11156995867759179 VLPLLKIIKK 10 Unmodified _VLPLLKIIKK_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2 nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MSMS UPN47_class_I_Rep_2 3 582.9243774414062 2 582.925752 1163.83695 NaN NaN NaN NaN NaN NaN NaN 92.931 1 96.399 95.899 96.899 3.4687 0 0 0 0.53105 1 22954 22954 0 0 1 49679 5096 31051 31065 57270 57270 0.26158641195138443 VLPLLKIIKK 10 Unmodified _VLPLLKIIKK_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2 nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MSMS UPN47_class_I_Rep_3 4 582.9248046875 2 582.925752 1163.83695 NaN NaN NaN NaN NaN NaN NaN 93.024 1 96.429 95.929 96.929 3.4052 0 0 0 0.53105 1 23207 23207 0 0 1 49680 5096 31051 31065 57271 57271 0.26158641195138443 VLPLLKIIKK 10 Unmodified _VLPLLKIIKK_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2 nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MSMS UPN48_class_I_Rep_1 5 582.92431640625 2 582.925752 1163.83695 NaN NaN NaN NaN NaN NaN NaN 92.589 1 96.213 95.713 96.713 3.624 0 0 0 0.53105 1 22249 22249 0.40072 0 1 49681 5096 31051 31065 57272 57272 0.26158641195138443 VLPLLKIIKK 10 Unmodified _VLPLLKIIKK_ 0 0 0 nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2 nc|ENSG00000187627|P0DJD0|RGPD1 nc|ENSG00000187627|P0DJD0|RGPD1 MSMS UPN48_class_I_Rep_2 6 582.9234619140625 2 582.925752 1163.83695 NaN NaN NaN NaN NaN NaN NaN 92.908 1 96.678 96.178 97.178 3.77 0 0 0 0.53105 1 22102 22102 0 0 1 49682 5096 31051 31065 57273 57273 0.26158641195138443 VLPLNIYILAL 11 Unmodified _VLPLNIYILAL_ 0 0 0 ENSG00000135655.16,USP15,chr12,+,I16.1,62355476,62374389|23|14.18|1|intron ENSG00000135655.16,USP15,chr12,+,I16.1,62355476,62374389|23|14.18|1|intron ENSG00000135655.16,USP15,chr12,+,I16.1,62355476,62374389|23|14.18|1|intron MSMS UPN47_class_I_Rep_1 2 621.3943481445312 2 621.397025 1240.7795 NaN NaN NaN NaN NaN NaN NaN 97.19 1 100.97 100.47 101.47 3.7767 0 0 0 0.38417 1 24087 24087 0.35063 0 1 49683 2921 31052 31066 57274 57274 0.1687375419894579 VLPLTPIK 8 Unmodified _VLPLTPIK_ 0 0 0 REV__L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|88|1|anti-sense REV__L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|88|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79913330078125 2 440.796946 879.57934 -0.40624 -0.00017907 3.1419 0.0013849 2.7357 0.0012059 440.79963490272775 29.709 1.1249 33.467 33.021 34.146 3.7578 119 81 2 0 0 0 0.82752 1 4738 4738 5.2307 0 1 103230 + 49684 26735 31053 31067 57275 57275 0.1347332432200119 VLPLTPIK 8 Unmodified _VLPLTPIK_ 0 0 0 REV__L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|88|1|anti-sense REV__L1MC3_dup3319|chr4:139981430-139983378:-|2.521184301517184|0.1141959631916318|4.46|151.0|88|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.799560546875 2 440.796946 879.57934 0.1056 4.6549E-05 2.5178 0.0011098 2.6234 0.0011564 440.79939542442156 62.992 0.54692 66.454 66.261 66.808 3.4625 56 35 2 0 0 0 0.82752 1 14178 14178 2.5775 0 1 143600 + 49685 26735 31053 31067 57276 57276 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79937744140625 2 440.796946 879.57934 0.16156 7.1215E-05 2.6125 0.0011516 2.774 0.0012228 440.7993820405865 89.065 0.45479 89.065 88.701 89.156 0 71 48 2 0 0 0 0.82752 1 21402 21402 0.79363 0 1 228590 49686 7704 31054 31068 57277 57277 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79925537109375 2 440.796946 879.57934 0.16184 7.1339E-05 1.8649 0.00082206 2.0268 0.0008934 440.79933805883934 94.872 0.15186 94.872 94.775 94.927 0 26 15 3 0 0 0 0.82752 1 23014 23014 0.79363 0 1 130260 49687 7704 31054 31068 57278 57278 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.2974853515625 2 440.796946 879.57934 -0.43613 -0.00019225 2.6546 0.0011701 2.2185 0.00097789 440.7997095377036 21.744 0.60168 25.419 25.059 25.661 3.6749 102 62 2 0 0 0 0.82752 1 2417 2417 0.79363 0 1 74541 49688 7704 31054 31068 57279 57279 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7987365722656 2 440.796946 879.57934 -0.41212 -0.00018166 3.5648 0.0015713 3.1526 0.0013897 440.79959863844033 28.147 0.63185 31.913 31.679 32.31 3.7662 79 49 2 0 0 0 0.82752 1 4339 4339 0.69038 0 1 114620 49689 7704 31054 31068 57280 57280 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7995910644531 2 440.796946 879.57934 -1.0757 -0.00047417 3.3494 0.0014764 2.2737 0.0010022 440.7999292588674 23.198 0.87417 26.548 25.945 26.82 3.3503 104 71 2 0 0 0 0.82752 1 2888 2888 0.69038 0 1 66440 49690 7704 31054 31068 57281 57281 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7995300292969 2 440.796946 879.57934 -0.97551 -0.00043 3.7317 0.0016449 2.7562 0.0012149 440.7999332147333 29.739 0.51659 33.062 32.765 33.281 3.3235 73 44 2 0 0 0 0.82752 1 4870 4870 0.69038 0 1 105580 49691 7704 31054 31068 57282 57282 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.2973937988281 2 440.796946 879.57934 -0.35042 -0.00015446 3.0462 0.0013428 2.6958 0.0011883 440.799474291978 65.853 0.99292 69.039 68.639 69.632 3.1853 93 65 2 0 0 0 0.82752 1 15859 15859 0.79363 0 1 112120 49692 7704 31054 31068 57283 57283 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79937744140625 2 440.796946 879.57934 -0.2813 -0.000124 3.2705 0.0014416 2.9892 0.0013176 440.79953102062325 111.36 0.60426 114.88 114.72 115.32 3.5207 80 61 2 0 0 0 0.82752 1 27324 27324 0.69038 0 1 101050 49693 7704 31054 31068 57284 57284 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 440.796946 879.57934 0.10715 4.7232E-05 8.4204 0.0037117 8.5276 0.0037589 440.79892839279495 85.299 0.040878 88.89 88.865 88.906 3.5914 -0.11899 0.0046785 NaN 0.79363 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 34194 49694 7704 31054 31068 0.1347332432200119 VLPLVLIN 8 Unmodified _VLPLVLIN_ 0 0 0 ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense ERV24B_Prim-int_dup80|chr3:136688692-136689359:-|1.6404528665644178|0.003144384099338|9.03|151.0|18|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 440.796946 879.57934 0.1213 5.3469E-05 7.7098 0.0033985 7.8311 0.0034519 440.79893824316804 85.367 0.044479 89.073 89.041 89.085 3.7058 0.063372 0.0040521 NaN 0.79363 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 39423 49695 7704 31054 31068 0.1347332432200119 VLPNRPFGLF 10 Unmodified _VLPNRPFGLF_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS UPN48_class_I_Rep_1 5 580.3349609375 2 580.334759 1158.65496 0.55825 0.00032397 -0.18155 -0.00010536 0.3767 0.00021861 580.334545704312 59.789 1.0535 63.269 62.841 63.894 3.4801 245 77 4 0 0 0 0.30832 1 13183 13183 30.637 5.2372 1 1664000 49696 693 31055 31069 57285 57285 0.08198301502261529 VLPPGNRR 8 Unmodified _VLPPGNRR_ 0 0 0 ENSG00000072080|ENST00000168148|SPP2 ENSG00000072080|ENST00000168148|SPP2 ENSG00000072080|ENST00000168148|SPP2 MSMS UPN47_class_I_Rep_3 4 454.7757568359375 2 454.774868 907.535184 NaN NaN NaN NaN NaN NaN NaN 20.694 1 24.043 23.543 24.543 3.3496 0 0 0 0.40738 1 2182 2182 0.79363 0 1 49697 1095 31056 31070 57286 57286 0.07771732948367571 VLPPLYVF 8 Unmodified _VLPPLYVF_ 0 0 0 L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|94|3|anti-sense L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|94|3|anti-sense L1PB1_dup7351|chr9:131154645-131156122:-|1.1874453775126346|0.0397976352701049|4.9|151.0|94|3|anti-sense MSMS UPN46_class_I_Rep_3 1 474.2821960449219 2 474.283672 946.552791 NaN NaN NaN NaN NaN NaN NaN 37.981 1 37.981 37.481 38.481 0 0 0 0 0.40581 1 7192 7192 2.8892 0 1 49698 15197 31057 31071 57287 57287 0.07737635430657974 VLPPNRFK 8 Unmodified _VLPPNRFK_ 0 0 0 REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF REV__ENST00000557163.1_1_14:61746812-61748042:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 485.5709228515625 2 485.795269 969.575986 -0.42928 -0.00020854 -3.6154 -0.0017564 -4.0447 -0.0019649 485.79380977961586 33.545 0.042671 36.819 36.8 36.842 3.2748 5 4 2 0 0 0 0.72333 1 5997 5997 2.3027 1.5091 1 22657 + 49699 20746 31058 31072 57288 57288 0.08998074267992706 VLPPRGLPG 9 Unmodified _VLPPRGLPG_ 0 0 0 REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF REV__ENST00000349606.4_1_6:16129553-16141990:+|nuORF MSMS UPN47_class_I_Rep_1 2 453.2815246582031 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.357 1 53.986 53.486 54.486 3.6285 0 0 0 0.38299 1 11035 11035 4.756 0 1 + 49700 21850 31059 31073 57289 57289 0.09334385376655518 VLPPRRHP 8 Unmodified _VLPPRRHP_ 0 0 0 ENST00000487659.1_1_1:1342042-1342597:-|nuORF ENST00000487659.1_1_1:1342042-1342597:-|nuORF ENST00000487659.1_1_1:1342042-1342597:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.298828125 2 486.29851 970.582468 0.10483 5.0979E-05 -0.78234 -0.00038045 -0.67751 -0.00032947 486.29800346922013 55.582 0.12107 59.061 59.003 59.124 3.4785 10 8 2 0 0 0 0.82752 1 12635 12635 0.69038 0 1 57219 49701 7046 31060 31074 57290 57290 0.09600012219357268 VLPPRRHP 8 Unmodified _VLPPRRHP_ 0 0 0 ENST00000487659.1_1_1:1342042-1342597:-|nuORF ENST00000487659.1_1_1:1342042-1342597:-|nuORF ENST00000487659.1_1_1:1342042-1342597:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 486.29851 970.582468 0.11799 5.7378E-05 -0.44034 -0.00021414 -0.32235 -0.00015676 486.2982660961039 55.893 0.088242 59.071 59.016 59.104 3.1779 0.0051819 0.00022255 NaN 0.69038 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 53044 49702 7046 31060 31074 0.09600012219357268 VLPQRFPQF 9 Unmodified _VLPQRFPQF_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MSMS UPN48_class_I_Rep_1 5 566.3199462890625 2 566.319109 1130.62366 NaN NaN NaN NaN NaN NaN NaN 58.622 1 62.109 61.609 62.609 3.487 0 0 0 0.38639 1 12808 12808 3.9444 0.3479 1 49703 1205 31061 31075 57291 57291 0.06357728468174173 VLPQRFPQF 9 Unmodified _VLPQRFPQF_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MULTI-MSMS UPN48_class_I_Rep_2 6 566.8206787109375 2 566.319109 1130.62366 0.57966 0.00032827 -0.23425 -0.00013266 0.34541 0.00019561 566.3188753287014 58.456 0.57074 61.955 61.774 62.345 3.4987 45 30 2 0 0 0 0.42249 1 12717 12717 6.7232 1.9672 1 104080 49704 1205 31061 31075 57292 57292 0.06357728468174173 VLPQRFPQF 9 Unmodified _VLPQRFPQF_ 0 0 0 nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 nc|ENSG00000080802|O95628-3|CNOT4 MULTI-MSMS UPN48_class_I_Rep_3 7 566.3190307617188 2 566.319109 1130.62366 0.39018 0.00022097 0.23406 0.00013255 0.62425 0.00035352 566.3190120592024 58.365 0.42517 61.888 61.672 62.097 3.5231 39 28 2 0 0 0 0.41259 1 12658 12658 7.2892 2.0586 1 98967 49705 1205 31061 31075 57293 57293 0.06357728468174173 VLPRPANFVF 10 Unmodified _VLPRPANFVF_ 0 0 0 AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.3348999023438 2 580.334759 1158.65496 0.55825 0.00032397 -0.18155 -0.00010536 0.3767 0.00021861 580.334545704312 59.789 1.0535 63.269 62.841 63.894 3.4801 245 77 4 0 0 0 0.40227 6 13145 13100;13145;13223;13229;13261;13305 19.257 0 1 1664000 49706 223 31062 31076 57294;57295;57296;57297;57298;57299 57295 0.08198301502261529 VLPRPANFVF 10 Unmodified _VLPRPANFVF_ 0 0 0 AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.3349609375 2 580.334759 1158.65496 0.55671 0.00032308 -0.12898 -7.4853E-05 0.42773 0.00024823 580.3345895145075 59.747 1.0155 63.234 62.805 63.821 3.4868 247 80 4 0 0 0 0.33585 4 13133 13094;13133;13171;13210 25.399 0 1 1630800 49707 223 31062 31076 57300;57301;57302;57303 57301 0.08198301502261529 VLPRPANFVF 10 Unmodified _VLPRPANFVF_ 0 0 0 AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense AluSp_dup10294|chr3:152314377-152314674:-|1.8535030625692492|0.0646051941147463|4.84|151.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.3348388671875 2 580.334759 1158.65496 0.46083 0.00026744 -0.10074 -5.846E-05 0.3601 0.00020898 580.3346112191005 59.573 1.0526 63.09 62.698 63.751 3.5169 218 82 3 0 0 0 0.33585 5 13041 12962;13004;13041;13079;13121 25.399 0 1 1537100 49708 223 31062 31076 57304;57305;57306;57307;57308 57306 0.08198301502261529 VLPSAVRFP 9 Unmodified _VLPSAVRFP_ 0 0 0 REV__ENST00000475662.5_1_2:27017046-27017178:+|nuORF REV__ENST00000475662.5_1_2:27017046-27017178:+|nuORF MSMS UPN46_class_I_Rep_3 1 493.2933654785156 2 493.295102 984.575651 NaN NaN NaN NaN NaN NaN NaN 89.243 1 89.243 88.743 89.743 0 0 0 0 0.39598 1 21464 21464 1.6526 0 1 + 49709 22535 31063 31077 57309 57309 0.08274654548131366 VLPTEIPCEN 10 Unmodified _VLPTEIPCEN_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MSMS UPN48_class_I_Rep_1 5 557.77783203125 2 557.776082 1113.53761 NaN NaN NaN NaN NaN NaN NaN 35.978 1 39.488 38.988 39.988 3.5101 0 0 0 0.53105 1 5954 5954 2.7352 0 1 49710 3636 31064 31078 57310 57310 -0.014616442195119816 VLPWFQHV 8 Unmodified _VLPWFQHV_ 0 0 0 REV__ENSG00000163251|ENST00000295417|FZD5 REV__ENSG00000163251|ENST00000295417|FZD5 MSMS UPN48_class_I_Rep_2 6 513.2821044921875 2 513.281995 1024.54944 NaN NaN NaN NaN NaN NaN NaN 26.404 1 30.038 29.538 30.538 3.6332 0 0 0 0.40738 1 3356 3356 0.79363 0 1 + 49711 19972 31065 31079 57311 57311 0.038143853766541724 VLPYIYPEL 9 Unmodified _VLPYIYPEL_ 0 0 0 REV__ENSG00000177576|ENST00000318240|C18orf32 REV__ENSG00000177576|ENST00000318240|C18orf32 MSMS UPN47_class_I_Rep_1 2 553.8086547851562 2 553.810251 1105.60595 NaN NaN NaN NaN NaN NaN NaN 46.297 1 49.997 49.497 50.497 3.6999 0 0 0 0.26661 1 9807 9807 12.532 0.89125 1 + 49712 20624 31066 31080 57312 57312 0.05736968422661448 VLPYIYPEL 9 Unmodified _VLPYIYPEL_ 0 0 0 REV__ENSG00000177576|ENST00000318240|C18orf32 REV__ENSG00000177576|ENST00000318240|C18orf32 MSMS UPN47_class_I_Rep_1 2 553.8069458007812 2 553.810251 1105.60595 NaN NaN NaN NaN NaN NaN NaN 46.579 1 50.279 49.779 50.779 3.6999 0 0 0 0.38478 1 9893 9893 4.3292 0.38484 1 + 49713 20624 31066 31080 57313 57313 0.05736968422661448 VLQACATTTS 10 Unmodified _VLQACATTTS_ 0 0 0 AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|21|3|anti-sense AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|21|3|anti-sense AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.7476806640625 2 497.747324 993.480096 -0.34127 -0.00016987 -0.37639 -0.00018735 -0.71765 -0.00035721 497.74692030552717 13.004 0.17824 16.461 16.375 16.553 3.457 22 14 2 0 0 0 0.56543 1 210 210 0 0 1 70887 49714 231 31067 31081 57314 57314 -0.016904864251046092 VLQACATTTS 10 Unmodified _VLQACATTTS_ 0 0 0 AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|21|3|anti-sense AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|21|3|anti-sense AluSp_dup22148|chr8:65730172-65730479:-|1.3300900962105324|0.2748829768354308|2.27|151.0|21|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.7464599609375 2 497.747324 993.480096 -0.66021 -0.00032862 -0.41704 -0.00020758 -1.0773 -0.0005362 497.74701268491043 12.968 0.19616 16.342 16.253 16.449 3.3734 35 22 2 0 0 0 0.56543 1 192 192 0 0 1 47658 49715 231 31067 31081 57315 57315 -0.016904864251046092 VLQATRPK 8 Unmodified _VLQATRPK_ 0 0 0 REV__ENSG00000188827|ENST00000294008|SLX4 REV__ENSG00000188827|ENST00000294008|SLX4 MULTI-MSMS UPN47_class_I_Rep_3 4 456.7842712402344 2 456.784902 911.55525 -0.99642 -0.00045515 -0.13816 -6.3107E-05 -1.1346 -0.00051826 456.7847467970705 16.826 0.89334 20.188 19.911 20.804 3.3619 122 101 2 0 0 0 0.82752 1 1094 1094 0.69038 0 1 38020 + 49716 20987 31068 31082 57316 57316 0.09593483888306764 VLQDIQVML 9 Oxidation (M) _VLQDIQVM(Oxidation (M))L_ VLQDIQVM(1)L VLQDIQVM(42)L 0 0 1 ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS UPN47_class_I_Rep_2 3 537.7966918945312 2 537.796817 1073.57908 0.34565 0.00018589 -0.60191 -0.0003237 -0.25626 -0.00013782 537.7963832544359 69.287 0.90746 72.563 72.252 73.159 3.2761 166 73 3 0 0 0 0.065535 1 16809 16809 42.312 21.898 1 725650 49717 1489 31069 31083 57317 57317 43 0.04523536539818451 VLQDIQVML 9 Oxidation (M) _VLQDIQVM(Oxidation (M))L_ 0 0 1 ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 537.796817 1073.57908 0.42159 0.00022673 -0.78802 -0.00042379 -0.36643 -0.00019706 537.7962124780468 69.296 1.3136 72.5 71.947 73.26 3.2044 0.0056996 -9.397E-05 NaN 42.312 190 102 3 NaN NaN NaN NaN 0 NaN NaN 0 1009200 49718 1489 31069 31083 43 0.04523536539818451 VLQDKFFR 8 Unmodified _VLQDKFFR_ 0 0 0 REV__L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|115|2|anti-sense REV__L1PA7_dup7614|chr9:123728772-123731266:+|1.23444600338802|0.0164568445104345|6.23|151.0|115|2|anti-sense MSMS UPN47_class_I_Rep_3 4 526.79736328125 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 27.991 1 31.325 30.825 31.825 3.3337 0 0 0 0.40746 1 4328 4328 0.69038 0 1 + 49719 30159 31070 31084 57318 57318 0.05773753059793307 VLQERSISF 9 Unmodified _VLQERSISF_ 0 0 0 L1PB1_dup12317|chr19:23351736-23352493:+|1.2346367744336904|0.3221471258515125|1.94|150.0|27|1|anti-sense L1PB1_dup12317|chr19:23351736-23352493:+|1.2346367744336904|0.3221471258515125|1.94|150.0|27|1|anti-sense L1PB1_dup12317|chr19:23351736-23352493:+|1.2346367744336904|0.3221471258515125|1.94|150.0|27|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 540.2852783203125 2 539.798206 1077.58186 0.27628 0.00014913 -0.18035 -9.7351E-05 0.09593 5.1783E-05 539.7981865849506 57.421 0.42151 57.421 57.139 57.561 0 56 42 2 0 0 0 0.12026 1 12556 12556 8.1555 8.1555 1 238000 49720 15029 31071 31085 57319 57319 0.046171279889904326 VLQGLPFGGV 10 Unmodified _VLQGLPFGGV_ 0 0 0 ENST00000525294.5_1_6:44095495-44104115:+|nuORF;TMEM63B|p.D147Rfs*79|1|0.33|ENSG00000137216|chr6:44139491-44139492|-/G|frameshift_variant;nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF;nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B ENST00000525294.5_1_6:44095495-44104115:+|nuORF ENST00000525294.5_1_6:44095495-44104115:+|nuORF MSMS UPN47_class_I_Rep_2 3 493.7861328125 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.41 1 112.94 112.44 113.44 3.5307 0 0 0 0.53105 1 26655 26655 7.2892 2.5332 1 49721 3014 31072 31086 57320 57320 0.06630948311237717 VLQLRNAE 8 Unmodified _VLQLRNAE_ 0 0 0 L1ME1_dup29003|chr19:15300640-15301280:+|2.070245351540779|0.0219659782414132|6.56|151.0|24|3|sense L1ME1_dup29003|chr19:15300640-15301280:+|2.070245351540779|0.0219659782414132|6.56|151.0|24|3|sense L1ME1_dup29003|chr19:15300640-15301280:+|2.070245351540779|0.0219659782414132|6.56|151.0|24|3|sense MSMS UPN47_class_I_Rep_2 3 471.7828369140625 2 471.771991 941.529429 NaN NaN NaN NaN NaN NaN NaN 119.42 1 122.9 122.4 123.4 3.4793 0 0 0 0.40746 1 29252 29252 0.69038 0 1 49722 12371 31073 31087 57321 57321 0.056325896460293734 VLQLTPSL 8 Unmodified _VLQLTPSL_ 0 0 0 nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1 nc|ENSG00000198520|Q6PIY5-2|ARMH1 nc|ENSG00000198520|Q6PIY5-2|ARMH1 MSMS UPN47_class_I_Rep_1 2 435.7671813964844 2 435.768386 869.522219 NaN NaN NaN NaN NaN NaN NaN 78.798 1 82.243 81.743 82.743 3.4456 0 0 0 0.40643 1 19603 19603 2.0598 0 1 49723 5436 31074 31088 57322 57322 0.08223857045607019 VLQLYFLKFF 10 Unmodified _VLQLYFLKFF_ 0 0 0 L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.9248352050781 3 439.925037 1316.75328 0.14613 6.4288E-05 -0.29499 -0.00012978 -0.14886 -6.5487E-05 439.92495534040137 99.882 0.47363 103.74 103.51 103.99 3.8537 115 66 2 0 0 0 0.56273 1 23670 23670 1.9064 0 1 283220 49724 10194 31075 31089 57323 57323 0.10757485027443181 VLQLYFLKFF 10 Unmodified _VLQLYFLKFF_ 0 0 0 L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 439.925037 1316.75328 -0.034349 -1.5111E-05 -0.043929 -1.9326E-05 -0.078278 -3.4436E-05 439.9250488480037 100.04 0.50548 103.65 103.45 103.95 3.6084 -0.10964 0.00025323 NaN 1.9064 104 63 3 NaN NaN NaN NaN 0 NaN NaN 0 298780 49725 10194 31075 31089 0.10757485027443181 VLQLYFLKFF 10 Unmodified _VLQLYFLKFF_ 0 0 0 L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 439.925037 1316.75328 0.12011 5.2839E-05 -1.444 -0.00063526 -1.3239 -0.00058242 440.2584725489354 100.13 0.025162 103.89 103.87 103.89 3.7575 0.1301 -0.0015946 NaN 1.9064 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 32632 49726 10194 31075 31089 0.10757485027443181 VLQLYFLKFF 10 Unmodified _VLQLYFLKFF_ 0 0 0 L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense L1MB1_dup5156|chr15:49942855-49946310:+|6.10841111276018|0.0109169937268214|9.13|151.0|127|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 439.925037 1316.75328 0.14613 6.4288E-05 -0.29499 -0.00012978 -0.14886 -6.5487E-05 439.92495534040137 99.882 0.47363 103.74 103.51 103.99 3.8537 -0.020459 -7.8114E-05 NaN 1.9064 115 66 2 NaN NaN NaN NaN 0 NaN NaN 0 283220 49727 10194 31075 31089 0.10757485027443181 VLQNKPTL 8 Unmodified _VLQNKPTL_ 0 0 0 ENSG00000058063.16,ATP11B,chr3,+,I29.1,182898773,182902480|24|10.19|1|intron;ENSG00000058063.16,ATP11B,chr3,+,I29.1,182898773,182902480|24|10.19|2|intron;ENST00000466758.5_1_3:182602545-182631653:+|nuORF;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENSG00000058063|ENST00000323116|ATP11B ENSG00000058063.16,ATP11B,chr3,+,I29.1,182898773,182902480|24|10.19|1|intron ENSG00000058063.16,ATP11B,chr3,+,I29.1,182898773,182902480|24|10.19|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 456.7797546386719 2 456.779285 911.544017 -0.32521 -0.00014855 0.33402 0.00015257 0.0088166 4.0272E-06 456.7794836897992 40.901 0.46423 44.573 44.399 44.863 3.6719 49 41 2 0 0 0 0.82752 1 8187 8187 15.847 0 1 56156 49728 955 31076 31090 57324 57324 0.08470661794183343 VLQQLTEA 8 Unmodified _VLQQLTEA_ 0 0 0 ENST00000216407.4_1_12:68867655-68868498:+|nuORF ENST00000216407.4_1_12:68867655-68868498:+|nuORF ENST00000216407.4_1_12:68867655-68868498:+|nuORF MSMS UPN47_class_I_Rep_3 4 451.2529296875 2 451.2531 900.491647 NaN NaN NaN NaN NaN NaN NaN 68.908 1 72.106 71.606 72.606 3.1977 0 0 0 0.40625 1 16772 16772 2.3027 0 1 49729 5864 31077 31091 57325 57325 0.037420786605480316 VLQTIQLS 8 Unmodified _VLQTIQLS_ 0 0 0 L1MA3_dup6464|chr11:73107358-73108551:-|4.898530977415386|0.0227232471721471|7.75|151.0|44|1|anti-sense;L1MA2_dup6801|chr16:72448444-72453702:-|4.205578860034894|0.0247959549660819|7.41|151.0|174|1|anti-sense L1MA3_dup6464|chr11:73107358-73108551:-|4.898530977415386|0.0227232471721471|7.75|151.0|44|1|anti-sense L1MA3_dup6464|chr11:73107358-73108551:-|4.898530977415386|0.0227232471721471|7.75|151.0|44|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.2711486816406 2 451.271293 900.528032 -0.22026 -9.9396E-05 -0.053335 -2.4069E-05 -0.27359 -0.00012347 451.271181536686 72.614 0.37396 75.841 75.653 76.027 3.2271 49 29 2 0 0 0 0.82752 1 17848 17848 16.149 0 1 100390 49730 9449 31078 31092 57326 57326 0.07378955557271638 VLQVAKKM 8 Unmodified _VLQVAKKM_ 0 0 0 ENST00000554755.1_1_14:88419498-88420125:+|nuORF;ENST00000419427.1_10:49088147-49088795:+|nuORF;ENSG00000122376.12,SHLD2,chr10,+,I5.1,87158156,87170477|24|5.96|5|intron;ENSG00000122376.12,SHLD2,chr10,+,I5.1,87158156,87170477|24|5.96|2|intron;nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2 ENST00000554755.1_1_14:88419498-88420125:+|nuORF ENST00000554755.1_1_14:88419498-88420125:+|nuORF MSMS UPN46_class_I_Rep_3 1 458.7878723144531 2 458.786056 915.557558 NaN NaN NaN NaN NaN NaN NaN 88.867 1 88.867 88.367 89.367 0 0 0 0 0.40625 1 21360 21360 2.3027 0.24298 1 49731 2383 31079 31093 57327 57327 0.09640196301768356 VLRANKKN 8 Unmodified _VLRANKKN_ 0 0 0 L1PA15-16_dup82|chr2:99229739-99230675:+|1.470978740647773|0.0253425542614044|5.86|151.0|38|1|anti-sense L1PA15-16_dup82|chr2:99229739-99230675:+|1.470978740647773|0.0253425542614044|5.86|151.0|38|1|anti-sense L1PA15-16_dup82|chr2:99229739-99230675:+|1.470978740647773|0.0253425542614044|5.86|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_3 4 471.7944641113281 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 35.501 1 38.756 38.256 39.256 3.2547 0 0 0 0.40746 1 6583 6583 0.69038 0 1 49732 14009 31080 31094 57328 57328 0.1039228863688777 VLRDRPIR 8 Unmodified _VLRDRPIR_ 0 0 0 REV__ENSG00000124257|ENST00000372518|NEURL2 REV__ENSG00000124257|ENST00000372518|NEURL2 MSMS UPN47_class_I_Rep_1 2 512.8062744140625 2 512.82235 1023.63015 NaN NaN NaN NaN NaN NaN NaN 57.339 1 60.776 60.276 61.276 3.437 0 0 0 0.40581 1 13162 13162 2.8892 0 1 + 49733 18802 31081 31095 57329 57329 0.11927666419546767 VLRGGGKR 8 Unmodified _VLRGGGKR_ 0 0 0 ENST00000475854.1_1_X:100914419-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF MSMS UPN47_class_I_Rep_1 2 421.7696228027344 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 87.611 1 91.248 90.748 91.748 3.6372 0 0 0 0.40738 1 21896 21896 0.79363 0 1 49734 6961 31082 31096 57330 57330 0.09751750293935402 VLRGKWIA 8 Unmodified _VLRGKWIA_ 0 0 0 L1PA10_dup227|chr1:147972657-147976953:-|3.864185909004816|0.4132861983585244|3.22|151.0|18|1|sense;L1PA10_dup214|chr1:145649981-145654272:-|3.94171074848698|0.3958316623804301|3.32|151.0|18|1|sense L1PA10_dup227|chr1:147972657-147976953:-|3.864185909004816|0.4132861983585244|3.22|151.0|18|1|sense L1PA10_dup227|chr1:147972657-147976953:-|3.864185909004816|0.4132861983585244|3.22|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 471.7966003417969 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 88.16 1 91.548 91.048 92.048 3.3873 0 0 0 0.40625 1 22109 22109 2.3027 0 1 49735 13594 31083 31097 57331 57331 0.10794378130583482 VLRHKKIP 8 Unmodified _VLRHKKIP_ 0 0 0 REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|75|3|sense REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|75|3|sense MSMS UPN48_class_I_Rep_1 5 495.8349914550781 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 44.426 1 47.939 47.439 48.439 3.5132 0 0 0 0.40738 1 8455 8455 0.79363 0 1 + 49736 28885 31084 31098 57332 57332 0.15458042430316254 VLRHKKIP 8 Unmodified _VLRHKKIP_ 0 0 0 REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|75|3|sense REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|75|3|sense MSMS UPN48_class_I_Rep_2 6 495.362060546875 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 45.008 1 48.769 48.269 49.269 3.7617 0 0 0 0.40738 1 8644 8644 0.79363 0 1 + 49737 28885 31084 31098 57333 57333 0.15458042430316254 VLRHKKIP 8 Unmodified _VLRHKKIP_ 0 0 0 REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|75|3|sense REV__L1P3_dup2577|chr11:76481343-76484652:+|4.050422161403729|0.0865679672695811|5.55|151.0|75|3|sense MSMS UPN48_class_I_Rep_3 7 495.8346862792969 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 44.795 1 48.432 47.932 48.932 3.6372 0 0 0 0.40738 1 8504 8504 0.79363 0 1 + 49738 28885 31084 31098 57334 57334 0.15458042430316254 VLRIKKKAK 9 Unmodified _VLRIKKKAK_ 0 0 0 L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|56|3|sense L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|56|3|sense L1MCa_dup550|chr2:11270055-11271639:-|1.3220745464953787|0.0269619495521497|5.62|151.0|56|3|sense MSMS UPN48_class_I_Rep_3 7 542.39013671875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 63.837 1 67.346 66.846 67.846 3.5083 0 0 0 0.40038 1 14304 14304 0.6015 0 1 49739 11826 31085 31099 57335 57335 0.22711146561300666 VLRKATKIK 9 Unmodified _VLRKATKIK_ 0 0 0 REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF MSMS UPN46_class_I_Rep_3 1 528.8652954101562 2 528.866226 1055.7179 NaN NaN NaN NaN NaN NaN NaN 102.19 1 102.19 101.69 102.69 0 0 0 0 0.4007 1 24935 24935 0.52476 0 1 + 49740 17688 31086 31100 57336 57336 0.19226867290285554 VLRLKDQR 8 Unmodified _VLRLKDQR_ 0 0 0 REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF MSMS UPN46_class_I_Rep_3 1 514.4061279296875 2 514.322183 1026.62981 NaN NaN NaN NaN NaN NaN NaN 84.312 1 84.312 83.812 84.812 0 0 0 0 0.40746 1 20055 20055 0.69038 0 1 + 49741 23096 31087 31101 57337 57337 0.11756246699678741 VLRLLLAL 8 Unmodified _VLRLLLAL_ 0 0 0 REV__AluJr_dup76706|chr19:8558153-8558465:-|1.0489100834694938|0.067747809524134|3.95|151.0|14|1|anti-sense REV__AluJr_dup76706|chr19:8558153-8558465:-|1.0489100834694938|0.067747809524134|3.95|151.0|14|1|anti-sense MSMS UPN46_class_I_Rep_3 1 455.7988586425781 2 455.826038 909.637523 NaN NaN NaN NaN NaN NaN NaN 22.36 1 22.36 21.86 22.86 0 0 0 0 0.40798 1 2642 2642 0 0 1 + 49742 17012 31088 31102 57338 57338 0.1790900596724896 VLRNLSLR 8 Unmodified _VLRNLSLR_ 0 0 0 L1M5_dup18236|chr5:139000308-139000878:+|1.3699576506948523|0.0106795396912589|7.0|150.0|27|1|anti-sense L1M5_dup18236|chr5:139000308-139000878:+|1.3699576506948523|0.0106795396912589|7.0|150.0|27|1|anti-sense L1M5_dup18236|chr5:139000308-139000878:+|1.3699576506948523|0.0106795396912589|7.0|150.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 486.3165283203125 2 485.811451 969.608348 0.17968 8.7288E-05 2.6936 0.0013086 2.8732 0.0013959 485.811701731913 64.886 0.60949 68.141 67.867 68.477 3.2556 78 49 3 0 0 0 0.82752 1 15442 15442 11.64 0.81637 1 597530 49743 9102 31089 31103 57339 57339 0.12232861670986495 VLRQTPLA 8 Unmodified _VLRQTPLA_ 0 0 0 REV__ENST00000589239.5_1_19:14080804-14104655:-|nuORF REV__ENST00000589239.5_1_19:14080804-14104655:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 449.279052734375 2 449.279452 896.544351 0.064414 2.894E-05 -0.23445 -0.00010534 -0.17004 -7.6395E-05 449.27915741987476 49.485 0.67653 53.114 52.85 53.526 3.6291 73 43 3 0 0 0 0.82752 1 9899 9899 4.3292 0 1 165390 + 49744 18997 31090 31104 57340 57340 0.09194081514033314 VLRRHPLSLVP 11 Unmodified _VLRRHPLSLVP_ 0 0 0 REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2 REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2 MSMS UPN46_class_I_Rep_3 1 643.9078979492188 2 643.906414 1285.79827 NaN NaN NaN NaN NaN NaN NaN 102.26 1 102.26 101.76 102.76 0 0 0 0 0.38417 1 24953 24953 1.3295 0.87119 1 + 49745 18805 31091 31105 57341 57341 0.16680728613346218 VLRRNVVS 8 Unmodified _VLRRNVVS_ 0 0 0 L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|255|2|anti-sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|255|2|anti-sense L1PA13_dup5130|chrX:64243469-64249466:-|1.2207210960649642|0.0269386011550756|5.5|150.0|255|2|anti-sense MSMS UPN48_class_I_Rep_2 6 471.7958679199219 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 61.557 1 65.031 64.531 65.531 3.4738 0 0 0 0.40604 1 13684 13684 2.5775 0 1 49746 13765 31092 31106 57342 57342 0.10392288636899139 VLRRQRWLR 9 Unmodified _VLRRQRWLR_ 0 0 0 REV__ENST00000428849.6_1_6:33359506-33359578:+|nuORF REV__ENST00000428849.6_1_6:33359506-33359578:+|nuORF MSMS UPN46_class_I_Rep_3 1 641.8826904296875 2 641.901997 1281.78944 NaN NaN NaN NaN NaN NaN NaN 91.74 1 91.74 91.24 92.24 0 0 0 0 0.4007 1 22171 22171 0.52476 0 1 + 49747 22281 31093 31107 57343 57343 0.15981799767541816 VLRRRHAA 8 Unmodified _VLRRRHAA_ 0 0 0 REV__ENST00000531473.5_1_8:144699171-144699615:-|nuORF REV__ENST00000531473.5_1_8:144699171-144699615:-|nuORF MSMS UPN48_class_I_Rep_1 5 489.8064880371094 2 489.807034 977.599515 NaN NaN NaN NaN NaN NaN NaN 72.285 1 75.758 75.258 76.258 3.4732 0 0 0 0.40746 1 16956 16956 0.69038 0 1 + 49748 22855 31094 31108 57344 57344 0.10981932825166041 VLRRRKRRRI 10 Unmodified _VLRRRKRRRI_ 0 0 0 ENST00000496567.5_1_9:97782205-97782394:+|nuORF ENST00000496567.5_1_9:97782205-97782394:+|nuORF ENST00000496567.5_1_9:97782205-97782394:+|nuORF MSMS UPN47_class_I_Rep_1 2 470.3221435546875 3 470.323522 1407.94874 NaN NaN NaN NaN NaN NaN NaN 64.234 1 67.59 67.09 68.09 3.3557 0 0 0 0.53105 1 15251 15251 0.15932 0.064481 1 49749 7102 31095 31109 57345 57345 0.26107933115531523 VLRRYLRF 8 Unmodified _VLRRYLRF_ 0 0 0 REV__nc|ENSG00000170054|Q86WD7-2|SERPINA9 REV__nc|ENSG00000170054|Q86WD7-2|SERPINA9 MSMS UPN48_class_I_Rep_3 7 561.8480224609375 2 561.848368 1121.68218 NaN NaN NaN NaN NaN NaN NaN 78.737 1 82.358 81.858 82.858 3.6216 0 0 0 0.40746 1 18647 18647 0.69038 0 1 + 49750 20347 31096 31110 57346 57346 0.12620829833326752 VLRSLVSLHQ 10 Unmodified _VLRSLVSLHQ_ 0 0 0 REV__AluJo_dup10138|chr2:135915284-135915586:-|1.1802927986770886|0.3842740965161488|1.62|151.0|18|1|anti-sense REV__AluJo_dup10138|chr2:135915284-135915586:-|1.1802927986770886|0.3842740965161488|1.62|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_3 7 576.3507080078125 2 576.348397 1150.68224 NaN NaN NaN NaN NaN NaN NaN 77.376 1 80.978 80.478 81.478 3.6016 0 0 0 0.53105 1 18274 18274 5.7319 0.83484 1 + 49751 16977 31097 31111 57347 57347 0.11292785042655851 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6 ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENST00000462159.1_1_1:100573356-100598412:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 482.26141357421875 2 482.284734 962.554916 0.19602 9.4535E-05 0.27001 0.00013022 0.46602 0.00022476 482.28481985955636 54.503 0.31218 54.503 54.301 54.613 0 54 32 2 0 0 0 0.72333 1 11749 11749 12.532 1.7076 1 356860 49752 3743 31098 31112 57348 57348 0.07214064168454115 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6 ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENST00000462159.1_1_1:100573356-100598412:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 482.28466796875 2 482.284734 962.554916 -0.06001 -2.8942E-05 0.19663 9.4834E-05 0.13662 6.5891E-05 482.2847556229136 48.348 1.4805 52.03 51.542 53.023 3.6819 237 92 4 0 0 0 0.82752 1 10695 10695 7.9102 1.187 1 2476600 49753 3743 31098 31112 57349 57349 0.07214064168454115 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6 ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENST00000462159.1_1_1:100573356-100598412:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 482.23431396484375 2 482.284734 962.554916 -0.031568 -1.5225E-05 0.57142 0.00027559 0.53985 0.00026036 482.28473489363887 49.421 0.12664 53.081 53 53.127 3.6592 14 9 2 0 0 0 0.72333 1 10741 10741 7.9102 1.187 1 58938 49754 3743 31098 31112 57350 57350 0.07214064168454115 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6 ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENST00000462159.1_1_1:100573356-100598412:-|nuORF MSMS UPN47_class_I_Rep_2 3 482.2850341796875 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 50.235 1 53.578 53.078 54.078 3.3431 0 0 0 0.39996 1 11024 11024 7.9102 1.187 1 49755 3743 31098 31112 57351 57351 0.07214064168454115 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6 ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENST00000462159.1_1_1:100573356-100598412:-|nuORF MSMS UPN47_class_I_Rep_3 4 482.2848815917969 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 50.241 1 53.467 52.967 53.967 3.2262 0 0 0 0.388 1 11082 11082 12.532 1.7076 1 49756 3743 31098 31112 57352 57352 0.07214064168454115 VLRTKEAF 8 Unmodified _VLRTKEAF_ 0 0 0 ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6 ENST00000462159.1_1_1:100573356-100598412:-|nuORF ENST00000462159.1_1_1:100573356-100598412:-|nuORF MSMS UPN47_class_I_Rep_3 4 482.2841796875 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 50.602 1 53.819 53.319 54.319 3.2163 0 0 0 0.40625 1 11193 11193 2.3027 0.4585 1 49757 3743 31098 31112 57353 57353 0.07214064168454115 VLRTRRLLSP 10 Unmodified _VLRTRRLLSP_ 0 0 0 ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron MSMS UPN48_class_I_Rep_1 5 404.263671875 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 70.003 1 73.463 72.963 73.963 3.4598 0 0 0 0.53105 1 16281 16281 0.62683 0.29755 1 49758 3635 31099 31113 57354 57354 0.1704815557927759 VLRTRRLLSP 10 Unmodified _VLRTRRLLSP_ 0 0 0 ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron MSMS UPN48_class_I_Rep_1 5 404.2630920410156 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 72.719 1 76.192 75.692 76.692 3.4732 0 0 0 0.53105 1 17086 17086 0.62683 0.12087 1 49759 3635 31099 31113 57355 57355 0.1704815557927759 VLRTRRLLSP 10 Unmodified _VLRTRRLLSP_ 0 0 0 ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron MSMS UPN48_class_I_Rep_2 6 404.26336669921875 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 68.798 1 72.306 71.806 72.806 3.5083 0 0 0 0.53105 1 15891 15891 1.7423 0.28716 1 49760 3635 31099 31113 57356 57356 0.1704815557927759 VLRTRRLLSP 10 Unmodified _VLRTRRLLSP_ 0 0 0 ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron ENSG00000153046.18,CDYL,chr6,+,I12.1,4937738,4943545|38|7.78|4|intron MSMS UPN48_class_I_Rep_3 7 404.263427734375 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 66.167 1 69.675 69.175 70.175 3.5077 0 0 0 0.53105 1 15009 15009 0.62683 0.063655 1 49761 3635 31099 31113 57357 57357 0.1704815557927759 VLRVNRTL 8 Unmodified _VLRVNRTL_ 0 0 0 nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B nc|ENSG00000167680|Q9H3T3-3|SEMA6B nc|ENSG00000167680|Q9H3T3-3|SEMA6B MULTI-SECPEP UPN47_class_I_Rep_3 4 485.3080749511719 2 485.811451 969.608348 0.0459 2.2299E-05 -1.7438 -0.00084713 -1.6979 -0.00082484 485.81071876724997 58.857 0.56566 62.022 61.818 62.384 3.1658 55 32 2 0 0 0 0.72333 1 13715 13715 5.7604 2.8712 1 360470 49762 4322 31100 31114 57358 57358 0.12232861670997863 VLRVPVLAPCP 11 Unmodified _VLRVPVLAPCP_ 0 0 0 REV__ENST00000498392.1_1_3:49069896-49070196:-|nuORF REV__ENST00000498392.1_1_3:49069896-49070196:-|nuORF MSMS UPN48_class_I_Rep_3 7 582.353759765625 2 582.352094 1162.68964 NaN NaN NaN NaN NaN NaN NaN 118.24 1 121.82 121.32 122.32 3.5847 0 0 0 0.38417 1 28118 28118 0.35063 0.35063 1 + 49763 22677 31101 31115 57359 57359 0.11479801318728278 VLRWQYNK 8 Unmodified _VLRWQYNK_ 0 0 0 REV__L1ME3G_dup7738|chr8:52705377-52705702:+|1.451249405141045|0.0119421208886888|6.93|151.0|6|1|sense REV__L1ME3G_dup7738|chr8:52705377-52705702:+|1.451249405141045|0.0119421208886888|6.93|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 553.8079223632812 2 553.808908 1105.60326 NaN NaN NaN NaN NaN NaN NaN 46.442 1 50.142 49.642 50.642 3.6999 0 0 0 0.38547 1 9850 9850 13.508 0.97634 1 + 49764 28207 31102 31116 57360 57360 0.0546855780835358 VLRWQYNK 8 Unmodified _VLRWQYNK_ 0 0 0 REV__L1ME3G_dup7738|chr8:52705377-52705702:+|1.451249405141045|0.0119421208886888|6.93|151.0|6|1|sense REV__L1ME3G_dup7738|chr8:52705377-52705702:+|1.451249405141045|0.0119421208886888|6.93|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.8085327148438 2 553.808908 1105.60326 0.28304 0.00015675 -1.7547 -0.00097176 -1.4716 -0.00081501 553.8080283723037 46.777 0.51686 50.128 49.858 50.374 3.3515 49 38 2 0 0 0 0.82752 1 10024 10024 8.5933 0.43775 1 92982 + 49765 28207 31102 31116 57361 57361 0.0546855780835358 VLSAELALR 9 Unmodified _VLSAELALR_ 0 0 0 ENST00000262384.3_1_16:48576776-48576818:-|nuORF ENST00000262384.3_1_16:48576776-48576818:-|nuORF ENST00000262384.3_1_16:48576776-48576818:-|nuORF MSMS UPN47_class_I_Rep_1 2 486.2994079589844 2 486.297842 970.581131 NaN NaN NaN NaN NaN NaN NaN 55.345 1 58.823 58.323 59.323 3.4785 0 0 0 0.37476 1 12554 12554 6.7232 0 1 49766 5967 31103 31117 57362 57362 0.09466333339923949 VLSARSSRV 9 Unmodified _VLSARSSRV_ 0 0 0 ENST00000274793.11_1_6:46690657-46703025:-|nuORF ENST00000274793.11_1_6:46690657-46703025:-|nuORF ENST00000274793.11_1_6:46690657-46703025:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 487.7902526855469 2 487.790715 973.566878 0.26781 0.00013064 0.24898 0.00012145 0.51679 0.00025208 487.7907493279484 78.929 0.5596 78.929 78.811 79.37 0 74 54 2 0 0 0 0.46869 1 18621 18621 3.9444 0 1 280850 49767 6020 31104 31118 57363 57363 0.07903680911658739 VLSARSSRV 9 Unmodified _VLSARSSRV_ 0 0 0 ENST00000274793.11_1_6:46690657-46703025:-|nuORF ENST00000274793.11_1_6:46690657-46703025:-|nuORF ENST00000274793.11_1_6:46690657-46703025:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 487.790715 973.566878 0.18381 8.9659E-05 -0.067499 -3.2925E-05 0.11631 5.6733E-05 487.7906410094086 75.905 0.45637 79.163 79.091 79.548 3.2573 0.10388 -0.00019641 NaN 3.9444 70 43 2 NaN NaN NaN NaN 0 NaN NaN 0 415840 49768 6020 31104 31118 0.07903680911658739 VLSARSSRV 9 Unmodified _VLSARSSRV_ 0 0 0 ENST00000274793.11_1_6:46690657-46703025:-|nuORF ENST00000274793.11_1_6:46690657-46703025:-|nuORF ENST00000274793.11_1_6:46690657-46703025:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 487.790715 973.566878 0.2826 0.00013785 0.052428 2.5574E-05 0.33503 0.00016342 487.7906467061749 75.375 0.31061 78.941 78.89 79.2 3.5658 -0.11786 -7.941E-05 NaN 3.9444 47 33 2 NaN NaN NaN NaN 0 NaN NaN 0 184100 49769 6020 31104 31118 0.07903680911658739 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_1 2 507.7951354980469 2 507.795132 1013.57571 0.23953 0.00012163 -0.062655 -3.1816E-05 0.17687 8.9814E-05 507.79500907621815 77.257 0.40697 80.672 80.353 80.76 3.4149 62 32 2 0 0 0 0.010597 3 19143 19102;19143;19182 106.94 48.261 1 636460 49770 2418 31105 31119 57364;57365;57366 57365 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_1 2 507.79510498046875 2 507.795132 1013.57571 0.24177 0.00012277 -0.14656 -7.4423E-05 0.095208 4.8346E-05 507.79498523954044 77.43 0.7853 80.858 80.763 81.548 3.4289 139 76 2 0 0 0 0.0063213 3 19218 19218;19254;19302 89.401 30.722 1 891850 49771 2418 31105 31119 57367;57368;57369 57367 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_2 3 507.79510498046875 2 507.795132 1013.57571 0.18935 9.615E-05 -0.0016032 -8.141E-07 0.18774 9.5336E-05 507.79499628509126 77.4 1.1302 80.732 80.395 81.525 3.3315 189 117 3 0 0 0 0.0051925 6 19181 19145;19181;19218;19255;19294;19336 129.77 51.623 1 773300 49772 2418 31105 31119 57370;57371;57372;57373;57374;57375 57371 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MULTI-MSMS UPN47_class_I_Rep_3 4 507.7950439453125 2 507.795132 1013.57571 0.27813 0.00014123 -0.20128 -0.00010221 0.076854 3.9026E-05 507.7950376134147 78.04 0.24854 81.321 81.267 81.516 3.2816 35 26 2 0 0 0 0.26468 2 19445 19445;19493 16.149 3.1066 1 115290 49773 2418 31105 31119 57376;57377 57376 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_3 4 507.79498291015625 2 507.795132 1013.57571 NaN NaN NaN NaN NaN NaN NaN 77.33 1 80.599 80.099 81.099 3.269 0 0 0 5.5612E-09 1 19252 19252 79.596 29.663 1 49774 2418 31105 31119 57378 57378 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_3 4 507.795166015625 2 507.795132 1013.57571 NaN NaN NaN NaN NaN NaN NaN 77.461 1 80.73 80.23 81.23 3.269 0 0 0 2.7954E-69 1 19291 19291 129.77 51.623 1 49775 2418 31105 31119 57379 57379 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_3 4 507.7950134277344 2 507.795132 1013.57571 NaN NaN NaN NaN NaN NaN NaN 77.585 1 80.854 80.354 81.354 3.269 0 0 0 2.7954E-69 1 19328 19328 129.77 61.692 1 49776 2418 31105 31119 57380 57380 0.06946609757460465 VLSDIIQNL 9 Unmodified _VLSDIIQNL_ 0 0 0 ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;chr12:54498835-54499355|148|18.43|0.4|5.54|+|ENST00000545638|NCKAP1L,NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L ENSG00000123338|ENST00000293373|NCKAP1L MSMS UPN47_class_I_Rep_3 4 507.7950744628906 2 507.795132 1013.57571 NaN NaN NaN NaN NaN NaN NaN 77.707 1 80.989 80.489 81.489 3.2816 0 0 0 1.8077E-06 1 19360 19360 69.105 19.172 1 49777 2418 31105 31119 57381 57381 0.06946609757460465 VLSELAARL 9 Unmodified _VLSELAARL_ 0 0 0 ENST00000378426.5_2_X:40506367-40506781:-|nuORF;nc|nan|Q8TB03-3|CXorf38;ENST00000378421.1_2_X:40499458-40506772:-|nuORF;ENSG00000185753|ENST00000327877|CXorf38 ENST00000378426.5_2_X:40506367-40506781:-|nuORF ENST00000378426.5_2_X:40506367-40506781:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 486.29876708984375 2 486.297842 970.581131 0.31738 0.00015434 0.25745 0.0001252 0.57483 0.00027954 486.2979909321632 55.51 0.53984 58.82 58.58 59.119 3.3102 40 29 2 0 0 0 0.24936 1 12637 12637 17.113 3.2068 1 79562 49778 5118 31106 31120 57382 57382 0.09466333339935318 VLSEPGKPIL 10 Unmodified _VLSEPGKPIL_ 0 0 0 REV__ERVL-E-int_dup894|chr2:25325538-25326108:+|1.067119585053012|0.0440713050670599|4.6|151.0|24|1|anti-sense REV__ERVL-E-int_dup894|chr2:25325538-25326108:+|1.067119585053012|0.0440713050670599|4.6|151.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 526.8218383789062 2 526.82115 1051.62775 NaN NaN NaN NaN NaN NaN NaN 77.073 1 77.073 76.573 77.573 0 0 0 0 0.53105 1 18002 18002 1.6526 0 1 + 49779 23297 31107 31121 57383 57383 0.10399773171252491 VLSGGLPLLC 10 Unmodified _VLSGGLPLLC_ 0 0 0 REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|167|1|anti-sense REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|167|1|anti-sense MSMS UPN48_class_I_Rep_2 6 486.2852478027344 2 486.283346 970.552139 NaN NaN NaN NaN NaN NaN NaN 35.54 1 39.228 38.728 39.728 3.6877 0 0 0 0.53105 1 5870 5870 10.824 0 1 + 49780 30596 31108 31122 57384 57384 0.06568472719311558 VLSGLVTYS 9 Unmodified _VLSGLVTYS_ 0 0 0 HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|452|3|anti-sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|452|3|anti-sense HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|452|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 469.83282470703125 2 469.7633 937.512048 0.067189 3.1563E-05 -0.35286 -0.00016576 -0.28567 -0.0001342 469.7631463730635 34.057 0.70694 34.057 33.727 34.434 0 67 49 2 0 0 0 0.12321 1 5950 5950 1.6526 0 1 130910 49781 8075 31109 31123 57385 57385 0.04079249320375311 VLSGVWVAY 9 Unmodified _VLSGVWVAY_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF;ENSG00000176092|ENST00000308182|CRYBG2 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MSMS UPN47_class_I_Rep_1 2 497.2726135253906 2 497.273835 992.533118 NaN NaN NaN NaN NaN NaN NaN 40.594 1 44.266 43.766 44.766 3.6719 0 0 0 0.19137 1 8067 8067 16.942 0 1 49782 2007 31110 31124 57386 57386 0.03655259419883805 VLSGVWVAY 9 Unmodified _VLSGVWVAY_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF;ENSG00000176092|ENST00000308182|CRYBG2 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MSMS UPN47_class_I_Rep_1 2 497.2724609375 2 497.273835 992.533118 NaN NaN NaN NaN NaN NaN NaN 40.725 1 44.397 43.897 44.897 3.6719 0 0 0 0.19137 1 8106 8106 16.942 0 1 49783 2007 31110 31124 57387 57387 0.03655259419883805 VLSGVWVAY 9 Unmodified _VLSGVWVAY_ 0 0 0 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF;ENSG00000176092|ENST00000308182|CRYBG2 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MSMS UPN47_class_I_Rep_2 3 497.27117919921875 2 497.273835 992.533118 NaN NaN NaN NaN NaN NaN NaN 41.023 1 44.389 43.889 44.889 3.3655 0 0 0 0.28335 1 8226 8226 11.64 0 1 49784 2007 31110 31124 57388 57388 0.03655259419883805 VLSHLLLIPL 10 Unmodified _VLSHLLLIPL_ 0 0 0 REV__L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|91|1|anti-sense REV__L1MC4a_dup6611|chr10:120895773-120897886:+|1.4813586737659596|0.3351917539306563|2.14|151.0|91|1|anti-sense MSMS UPN47_class_I_Rep_1 2 559.3679809570312 2 559.37081 1116.72707 NaN NaN NaN NaN NaN NaN NaN 98.129 1 101.92 101.42 102.42 3.7861 0 0 0 0.53105 1 24297 24297 0.40072 0 1 + 49785 27012 31111 31125 57389 57389 0.17337215855991417 VLSHPLYFSHI 11 Unmodified _VLSHPLYFSHI_ 0 0 0 REV__HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|22|1|sense REV__HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|22|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.57421875 3 438.239796 1311.69756 0.0051945 2.2764E-06 -0.070116 -3.0728E-05 -0.064922 -2.8451E-05 438.2397089942336 65.751 1.0145 69.108 68.642 69.656 3.3576 139 61 3 0 0 0 0.51094 1 15728 15728 7.4771 0 1 300760 + 49786 23953 31112 31126 57390 57390 0.05417651839843529 VLSIFLNLLRL 11 Unmodified _VLSIFLNLLRL_ 0 0 0 L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|156|2|anti-sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|156|2|anti-sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|156|2|anti-sense MSMS UPN48_class_I_Rep_2 6 434.2830505371094 3 434.283224 1299.82784 NaN NaN NaN NaN NaN NaN NaN 55.909 1 59.465 58.965 59.965 3.5559 0 0 0 0.38417 1 11959 11959 2.6312 0 1 49787 15118 31113 31127 57391 57391 0.18992247838809817 VLSKKGLH 8 Unmodified _VLSKKGLH_ 0 0 0 REV__MLT1H-int_dup573|chr11:61453733-61454615:+|2.032777893888281|0.081818939199605|4.63|151.0|4|1|sense REV__MLT1H-int_dup573|chr11:61453733-61454615:+|2.032777893888281|0.081818939199605|4.63|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 441.2823486328125 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 64.721 1 68.229 67.729 68.729 3.5083 0 0 0 0.40738 1 14570 14570 0.79363 0 1 + 49788 31755 31114 31128 57392 57392 0.10438385376664883 VLSLGKLKV 9 Unmodified _VLSLGKLKV_ 0 0 0 REV__L1MC4a_dup4808|chr8:38121381-38122373:-|1.1755946003067026|0.0533186899078641|4.46|151.0|44|3|sense REV__L1MC4a_dup4808|chr8:38121381-38122373:-|1.1755946003067026|0.0533186899078641|4.46|151.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.8282775878906 2 478.828778 955.643003 0.16611 7.9537E-05 0.040829 1.955E-05 0.20694 9.9087E-05 478.82875497887716 49.275 1.1715 52.992 52.432 53.604 3.7175 135 74 2 0 0 0 0.49026 1 9794 9794 1.6526 0 1 342980 + 49789 27000 31115 31129 57393 57393 0.16340684759086344 VLSLKIYA 8 Unmodified _VLSLKIYA_ 0 0 0 REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|274|3|anti-sense REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|274|3|anti-sense MSMS UPN47_class_I_Rep_1 2 453.7850341796875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 76.854 1 80.269 79.769 80.769 3.4149 0 0 0 0.40738 1 19038 19038 0.79363 0 1 + 49790 30391 31116 31130 57394 57394 0.10204733942305211 VLSLKIYA 8 Unmodified _VLSLKIYA_ 0 0 0 REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|274|3|anti-sense REV__L1PB1_dup3722|chr4:173064501-173069176:-|1.517611232805663|0.0489063944384833|4.96|151.0|274|3|anti-sense MSMS UPN47_class_I_Rep_2 3 453.7850036621094 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 65.597 1 68.853 68.353 69.353 3.2556 0 0 0 0.40738 1 15706 15706 0.79363 0 1 + 49791 30391 31116 31130 57395 57395 0.10204733942305211 VLSMLWIL 8 Unmodified _VLSMLWIL_ 0 0 0 L1MC1_dup5610|chr6:142211730-142212579:+|1.4554738547349766|0.0848072038073338|4.1|151.0|65|3|anti-sense L1MC1_dup5610|chr6:142211730-142212579:+|1.4554738547349766|0.0848072038073338|4.1|151.0|65|3|anti-sense L1MC1_dup5610|chr6:142211730-142212579:+|1.4554738547349766|0.0848072038073338|4.1|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 487.79144287109375 2 487.790807 973.56706 0.18151 8.8541E-05 0.71224 0.00034742 0.89375 0.00043596 487.7911230354498 75.136 0.6289 78.383 77.892 78.521 3.2464 104 67 2 0 0 0 0.82752 1 18537 18537 0.79363 0 1 155750 49792 11165 31117 31131 57396 57396 0.07921964587308139 VLSMMHINY 9 Unmodified _VLSMMHINY_ 0 0 0 REV__L1MC3_dup41|chr1:10087462-10088185:-|1.1725192860235871|0.0169453747534405|6.11|150.0|38|2|anti-sense REV__L1MC3_dup41|chr1:10087462-10088185:-|1.1725192860235871|0.0169453747534405|6.11|150.0|38|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 553.8213500976562 2 554.269912 1106.52527 0.43893 0.00024329 -0.96773 -0.00053638 -0.5288 -0.0002931 554.269358902843 73.599 0.56213 76.904 76.673 77.235 3.3048 88 51 2 0 0 0 0.12099 1 18186 18186 6.7232 1.4925 1 148620 + 49793 26741 31118 31132 57397 57397 -0.023729591635401448 VLSPADKTNV 10 Unmodified _VLSPADKTNV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000472694.1_1_16:226715-226811:+|nuORF;ENST00000397797.1_1_16:226715-226977:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MSMS UPN46_class_I_Rep_3 1 522.290283203125 2 522.290214 1042.56587 0.17807 9.3006E-05 -0.10548 -5.509E-05 0.072597 3.7917E-05 522.2900694503345 34.877 0.64998 34.877 34.7 35.35 0 104 48 3 0 0 0 0.21352 2 6282 6282;6319 45.74 10.808 1 390460 + 49794 5235 31119 31133 57398;57399 57398 0.04629421752088092 VLSPADKTNV 10 Unmodified _VLSPADKTNV_ 0 0 0 ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;ENST00000472694.1_1_16:226715-226811:+|nuORF;ENST00000397797.1_1_16:226715-226977:+|nuORF ENSG00000206172|ENST00000320868|HBA1 ENSG00000206172|ENST00000320868|HBA1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 522.290214 1042.56587 -0.36285 -0.00018951 0.59312 0.00030978 0.23027 0.00012027 522.2904513715723 30.996 0.49771 34.478 34.229 34.727 3.4821 -0.19972 0.00064763 NaN 45.74 52 39 2 NaN NaN NaN NaN 0 NaN NaN 0 87665 + 49795 5235 31119 31133 0.04629421752088092 VLSQLVTTL 9 Unmodified _VLSQLVTTL_ 0 0 0 REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 487.29876708984375 2 487.30005 972.585547 0.057298 2.7921E-05 -1.7979 -0.00087614 -1.7406 -0.00084822 487.2991580434194 52.448 0.18557 56.006 55.972 56.157 3.5585 14 13 2 0 0 0 0.279 2 11675 11675;11685 15.248 0 1 157820 + 49796 17151 31120 31134 57400;57401 57400 0.09815797762848888 VLSQLVTTL 9 Unmodified _VLSQLVTTL_ 0 0 0 REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 487.29937744140625 2 487.30005 972.585547 NaN NaN NaN NaN NaN NaN NaN 52.322 1 55.881 55.381 56.381 3.5585 0 0 0 0.21832 1 11632 11632 15.248 0 1 + 49797 17151 31120 31134 57402 57402 0.09815797762848888 VLSQLVTTL 9 Unmodified _VLSQLVTTL_ 0 0 0 REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 487.2997131347656 2 487.30005 972.585547 0.32591 0.00015882 -0.68574 -0.00033416 -0.35983 -0.00017534 487.2997936725768 52.731 0.52769 56.064 55.938 56.465 3.3326 43 34 2 0 0 0 0.30497 1 11757 11757 13.615 0 1 83863 + 49798 17151 31120 31134 57403 57403 0.09815797762848888 VLSQLVTTL 9 Unmodified _VLSQLVTTL_ 0 0 0 REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense MSMS UPN47_class_I_Rep_3 4 487.29937744140625 2 487.30005 972.585547 NaN NaN NaN NaN NaN NaN NaN 52.875 1 56.069 55.569 56.569 3.1948 0 0 0 0.23173 1 11881 11881 14.405 0 1 + 49799 17151 31120 31134 57404 57404 0.09815797762848888 VLSQLVTTL 9 Unmodified _VLSQLVTTL_ 0 0 0 REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 487.30005 972.585547 0.057298 2.7921E-05 -1.7979 -0.00087614 -1.7406 -0.00084822 487.2991580434194 52.448 0.18557 56.006 55.972 56.157 3.5585 -0.028812 -0.00092496 NaN 15.248 14 13 2 NaN NaN NaN NaN 0 NaN NaN 0 157820 + 49800 17151 31120 31134 0.09815797762848888 VLSQLVTTL 9 Unmodified _VLSQLVTTL_ 0 0 0 REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense REV__AluSx_dup70515|chr11:47541409-47541683:+|1.0632694889775265|0.0084066231419602|6.98|151.0|8|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 487.30005 972.585547 0.32591 0.00015882 -0.68574 -0.00033416 -0.35983 -0.00017534 487.2997936725768 52.731 0.52769 56.064 55.938 56.465 3.3326 0.028812 0.000159 NaN 15.248 43 34 2 NaN NaN NaN NaN 0 NaN NaN 0 83863 + 49801 17151 31120 31134 0.09815797762848888 VLSQPVHLA 9 Unmodified _VLSQPVHLA_ 0 0 0 ERV3-16A3_I-int_dup5086|chr13:99342732-99343200:-|1.153159588736294|0.0328300529293986|5.13|151.0|20|2|anti-sense ERV3-16A3_I-int_dup5086|chr13:99342732-99343200:-|1.153159588736294|0.0328300529293986|5.13|151.0|20|2|anti-sense ERV3-16A3_I-int_dup5086|chr13:99342732-99343200:-|1.153159588736294|0.0328300529293986|5.13|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.28485107421875 2 482.284734 962.554916 -0.06001 -2.8942E-05 0.19663 9.4834E-05 0.13662 6.5891E-05 482.2847556229136 48.348 1.4805 52.03 51.542 53.023 3.6819 237 92 4 0 0 0 0.052902 2 10397 10397;10475 47.749 1.7277 1 2476600 49802 7711 31121 31135 57405;57406 57405 0.07214064168465484 VLSQPVHLA 9 Unmodified _VLSQPVHLA_ 0 0 0 ERV3-16A3_I-int_dup5086|chr13:99342732-99343200:-|1.153159588736294|0.0328300529293986|5.13|151.0|20|2|anti-sense ERV3-16A3_I-int_dup5086|chr13:99342732-99343200:-|1.153159588736294|0.0328300529293986|5.13|151.0|20|2|anti-sense ERV3-16A3_I-int_dup5086|chr13:99342732-99343200:-|1.153159588736294|0.0328300529293986|5.13|151.0|20|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.28466796875 2 482.284734 962.554916 0.091891 4.4318E-05 -0.07775 -3.7498E-05 0.014141 6.82E-06 482.28462847451004 48.804 1.6403 52.038 51.577 53.217 3.2345 260 90 4 0 0 0 0.052902 2 10638 10638;10684 47.749 1.7277 1 2556100 49803 7711 31121 31135 57407;57408 57407 0.07214064168465484 VLSSFRPLI 9 Unmodified _VLSSFRPLI_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|257|2|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|257|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.3175659179688 2 516.316035 1030.61752 0.2816 0.00014539 0.95959 0.00049545 1.2412 0.00064084 516.3165995692027 57.809 0.77193 61.34 61.026 61.798 3.5317 108 52 3 0 0 0 0.24936 1 12415 12415 17.113 0 1 498570 + 49804 30105 31122 31136 57409 57409 0.10343210236646883 VLSSRKKKHK 10 Unmodified _VLSSRKKKHK_ 0 0 0 REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|70|3|sense REV__L1PA7_dup3553|chr4:123149961-123152311:+|1.1488165466344844|0.0313137857485258|5.2|151.0|70|3|sense MSMS UPN48_class_I_Rep_2 6 404.66448974609375 3 404.262935 1209.76697 NaN NaN NaN NaN NaN NaN NaN 92.638 1 96.401 95.901 96.901 3.7629 0 0 0 0.53105 1 22042 22042 0.69767 0.07084 1 + 49805 30075 31123 31137 57410 57410 0.1704815557927759 VLSTLWEP 8 Unmodified _VLSTLWEP_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MSMS UPN46_class_I_Rep_3 1 472.7547607421875 2 472.758018 943.501483 NaN NaN NaN NaN NaN NaN NaN 22.537 1 22.537 22.037 23.037 0 0 0 0 0.36148 1 2693 2693 19.439 0 1 49806 1045 31124 31138 57411 57411 0.02747266665949155 VLSTLWEP 8 Unmodified _VLSTLWEP_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MSMS UPN46_class_I_Rep_3 1 472.755859375 2 472.758018 943.501483 NaN NaN NaN NaN NaN NaN NaN 22.697 1 22.697 22.197 23.197 0 0 0 0 0.36148 1 2736 2736 19.439 0 1 49807 1045 31124 31138 57412 57412 0.02747266665949155 VLSVHFDGL 9 Unmodified _VLSVHFDGL_ 0 0 0 L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|91|2|anti-sense L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|91|2|anti-sense L1ME1_dup393|chr1:35400606-35402335:-|2.3980120389705912|0.1808616015139799|3.73|151.0|91|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.76861572265625 2 493.768917 985.523281 0.064287 3.1743E-05 -0.024629 -1.2161E-05 0.039658 1.9582E-05 493.7688783424402 46.409 0.67808 49.653 49.359 50.037 3.2439 75 43 2 0 0 0 0.12799 1 9902 9902 28.487 3.0875 1 121160 49808 12406 31125 31139 57413 57413 0.029940714145254788 VLSVIWQL 8 Unmodified _VLSVIWQL_ 0 0 0 ENSG00000162851|ENST00000366514|TFB2M ENSG00000162851|ENST00000366514|TFB2M ENSG00000162851|ENST00000366514|TFB2M MSMS UPN47_class_I_Rep_3 4 479.2938232421875 2 479.292028 956.569503 NaN NaN NaN NaN NaN NaN NaN 39.733 1 42.971 42.471 43.471 3.238 0 0 0 0.40364 1 7883 7883 5.7604 0 1 49809 3967 31126 31140 57414 57414 0.08948136316621458 VLSVYFYIYL 10 Unmodified _VLSVYFYIYL_ 0 0 0 REV__L1ME3B_dup7574|chr18:79266116-79269624:-|1.0946046934659066|0.0819312448735967|3.74|150.0|208|2|anti-sense REV__L1ME3B_dup7574|chr18:79266116-79269624:-|1.0946046934659066|0.0819312448735967|3.74|150.0|208|2|anti-sense MSMS UPN48_class_I_Rep_1 5 640.3512573242188 2 640.352283 1278.69001 NaN NaN NaN NaN NaN NaN NaN 53.175 1 56.694 56.194 57.194 3.5192 0 0 0 0.53105 1 11134 11134 1.8442 0 1 + 49810 28084 31127 31141 57415 57415 0.061814995195618394 VLSYIMLTLFL 11 Unmodified _VLSYIMLTLFL_ 0 0 0 REV__LTR10E_dup254|chr19:16221231-16221785:-|1.2333957345020905|0.046392349261369|4.73|150.0|36|3|anti-sense REV__LTR10E_dup254|chr19:16221231-16221785:-|1.2333957345020905|0.046392349261369|4.73|150.0|36|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 438.13348388671875 3 438.257687 1311.75123 -0.11334 -4.9673E-05 -0.23838 -0.00010447 -0.35172 -0.00015414 438.2575669021438 29.637 0.95086 29.637 29.281 30.232 0 198 82 3 0 0 0 22.551 1 4881 4881 2.8433 0 1 419740 + 49811 30790 31128 31142 57416 57416 0.10782688227345716 VLTAGPSGSFL 11 Unmodified _VLTAGPSGSFL_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 524.786865234375 2 524.787307 1047.56006 NaN NaN NaN NaN NaN NaN NaN 78.558 1 78.558 78.058 79.058 0 0 0 0 0.28775 1 18404 18404 13.042 0.51092 1 + 49812 31352 31129 31143 57417 57417 0.03818323240443533 VLTAGPSGSFL 11 Unmodified _VLTAGPSGSFL_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 524.78759765625 2 524.787307 1047.56006 NaN NaN NaN NaN NaN NaN NaN 78.682 1 78.682 78.182 79.182 0 0 0 0 0.087034 1 18442 18442 24.021 5.8742 1 + 49813 31352 31129 31143 57418 57418 0.03818323240443533 VLTAGPSGSFL 11 Unmodified _VLTAGPSGSFL_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 524.787353515625 2 524.787307 1047.56006 NaN NaN NaN NaN NaN NaN NaN 78.831 1 78.831 78.331 79.331 0 0 0 0 0.18661 1 18486 18486 18.146 1.0598 1 + 49814 31352 31129 31143 57419 57419 0.03818323240443533 VLTAGPSGSFL 11 Unmodified _VLTAGPSGSFL_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 524.7872924804688 2 524.787307 1047.56006 0.31283 0.00016417 -0.26388 -0.00013848 0.048947 2.5687E-05 524.7871093238286 73.821 0.81139 77.207 76.9 77.712 3.3861 219 78 4 0 0 0 0.27364 3 18111 18111;18218;18252 18.146 2.0222 1 583100 + 49815 31352 31129 31143 57420;57421;57422 57420 0.03818323240443533 VLTAGPSGSFL 11 Unmodified _VLTAGPSGSFL_ 0 0 0 REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense REV__MER4B_dup1508|chr17:2876278-2876882:-|1.1136530093741477|0.0045037017827892|7.95|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.7874755859375 2 524.787307 1047.56006 0.081681 4.2865E-05 -0.048304 -2.535E-05 0.033377 1.7516E-05 524.7872050853895 74.014 0.90594 77.318 76.939 77.845 3.3048 265 92 4 0 0 0 0.32821 1 18155 18155 13.042 1.4022 1 653320 + 49816 31352 31129 31143 57423 57423 0.03818323240443533 VLTAPITK 8 Unmodified _VLTAPITK_ 0 0 0 ENST00000483923.5_1_10:100150731-100167745:-|nuORF;ENSG00000119943|ENST00000370575|PYROXD2 ENST00000483923.5_1_10:100150731-100167745:-|nuORF ENST00000483923.5_1_10:100150731-100167745:-|nuORF MSMS UPN48_class_I_Rep_3 7 421.7696533203125 2 421.770929 841.527304 NaN NaN NaN NaN NaN NaN NaN 87.356 1 91.147 90.647 91.647 3.7905 0 0 0 0.40604 1 20728 20728 2.5775 0 1 49817 2307 31130 31144 57424 57424 0.10020160908220532 VLTDKDKYL 9 Unmodified _VLTDKDKYL_ 0 0 0 REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 547.8073120117188 2 547.808239 1093.60193 -0.084502 -4.6291E-05 -0.36054 -0.00019751 -0.44504 -0.0002438 547.8077817055034 37.315 0.75647 40.562 40.24 40.997 3.247 85 56 2 0 0 0 0.43982 1 7084 7084 5.7319 0 1 99374 + 49818 19062 31131 31145 57425 57425 0.05886878928936312 VLTFMCRL 8 Unmodified _VLTFMCRL_ 0 0 0 L1ME1_dup10643|chr5:151193614-151194612:+|1.081326769992676|0.0179933987954982|5.91|151.0|63|3|anti-sense L1ME1_dup10643|chr5:151193614-151194612:+|1.081326769992676|0.0179933987954982|5.91|151.0|63|3|anti-sense L1ME1_dup10643|chr5:151193614-151194612:+|1.081326769992676|0.0179933987954982|5.91|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_3 4 491.76312255859375 2 491.764266 981.513979 NaN NaN NaN NaN NaN NaN NaN 23.716 1 27.067 26.567 27.567 3.3509 0 0 0 0.40643 1 3064 3064 2.0598 0 1 49819 12169 31132 31146 57426 57426 0.022482635329993172 VLTGEPAY 8 Unmodified _VLTGEPAY_ 0 0 0 REV__ENST00000432071.1_1_2:85808896-85809064:+|nuORF REV__ENST00000432071.1_1_2:85808896-85809064:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 425.7525634765625 2 425.221268 848.427984 0.10541 4.4822E-05 0.50708 0.00021562 0.61248 0.00026044 425.22132704658895 82.648 0.35439 82.648 82.384 82.738 0 62 33 2 0 0 0 0.72333 1 19559 19559 0 0 1 964010 + 49820 22296 31133 31147 57427 57427 -0.002292817765237487 VLTGHRKE 8 Unmodified _VLTGHRKE_ 0 0 0 REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF MSMS UPN46_class_I_Rep_3 1 470.27197265625 2 470.272158 938.529764 NaN NaN NaN NaN NaN NaN NaN 86.725 1 86.725 86.225 87.225 0 0 0 0 0.40157 1 20742 20742 7.2892 0 1 + 49821 22767 31134 31148 57428 57428 0.058040093658974 VLTGHRKE 8 Unmodified _VLTGHRKE_ 0 0 0 REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 470.2719421386719 2 470.272158 938.529764 0.15321 7.2049E-05 -0.19623 -9.2282E-05 -0.043023 -2.0233E-05 470.2719451040926 83.284 0.66632 86.695 86.415 87.081 3.4116 175 81 3 0 0 0 0.82752 1 20738 20738 7.2892 0 1 289840 + 49822 22767 31134 31148 57429 57429 0.058040093658974 VLTGILEQV 9 Unmodified _VLTGILEQV_ 0 0 0 ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568642.5_1_16:46706372-46712929:-|nuORF ENST00000568642.5_1_16:46706372-46712929:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 486.2919921875 2 486.292225 970.569897 0.12078 5.8734E-05 -0.3037 -0.00014769 -0.18292 -8.8951E-05 486.2919261218983 71.261 0.56839 74.636 74.44 75.008 3.3751 73 46 2 0 0 0 0.066633 2 17367 17328;17367 41.84 11.203 1 165320 49823 1058 31135 31149 57430;57431 57431 0.08343511245811897 VLTGILEQV 9 Unmodified _VLTGILEQV_ 0 0 0 ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568642.5_1_16:46706372-46712929:-|nuORF ENST00000568642.5_1_16:46706372-46712929:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 486.29229736328125 2 486.292225 970.569897 0.22084 0.00010739 -0.37862 -0.00018412 -0.15778 -7.673E-05 486.29191362308956 71.466 0.79671 74.756 74.471 75.268 3.2899 89 67 3 0 0 0 0.1249 2 17470 17470;17495 29.082 3.6823 1 153300 49824 1058 31135 31149 57432;57433 57432 0.08343511245811897 VLTGILEQV 9 Unmodified _VLTGILEQV_ 0 0 0 ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENST00000568642.5_1_16:46706372-46712929:-|nuORF ENST00000568642.5_1_16:46706372-46712929:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 486.29229736328125 2 486.292225 970.569897 0.15684 7.6272E-05 -0.34607 -0.00016829 -0.18923 -9.202E-05 486.29202455889174 71.497 0.71436 74.716 74.498 75.212 3.2188 90 57 2 0 0 0 0.1249 3 17587 17506;17587;17635 29.082 7.6309 1 202880 49825 1058 31135 31149 57434;57435;57436 57435 0.08343511245811897 VLTGLSIRL 9 Unmodified _VLTGLSIRL_ 0 0 0 ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 MSMS UPN47_class_I_Rep_1 2 486.3163146972656 2 486.316035 970.617516 NaN NaN NaN NaN NaN NaN NaN 64.393 1 67.749 67.249 68.249 3.3557 0 0 0 0.036539 1 15298 15298 41.956 3.78 1 49826 3233 31136 31150 57437 57437 0.13103210236658924 VLTGLSIRL 9 Unmodified _VLTGLSIRL_ 0 0 0 ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 MSMS UPN47_class_I_Rep_1 2 486.3160095214844 2 486.316035 970.617516 NaN NaN NaN NaN NaN NaN NaN 64.517 1 67.872 67.372 68.372 3.3557 0 0 0 0.027878 1 15333 15333 47.749 0 1 49827 3233 31136 31150 57438 57438 0.13103210236658924 VLTGSGLSFV 10 Unmodified _VLTGSGLSFV_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|341|2|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|341|2|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|341|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.2762756347656 2 490.276575 978.538597 -0.26439 -0.00012962 0.22754 0.00011156 -0.036855 -1.8069E-05 490.276681479092 39.286 0.51929 42.951 42.76 43.28 3.6652 64 37 2 0 0 0 0.51565 1 7671 7671 10.074 0 1 81213 49828 13850 31137 31151 57439 57439 0.04846938211710494 VLTGSGLSFV 10 Unmodified _VLTGSGLSFV_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|341|2|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|341|2|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|341|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 490.27642822265625 2 490.276575 978.538597 -0.28681 -0.00014062 0.26283 0.00012886 -0.023976 -1.1755E-05 490.2765639665919 39.809 0.65037 43.046 42.735 43.385 3.2372 63 45 2 0 0 0 0.47413 1 7907 7907 13.906 0 1 99574 49829 13850 31137 31151 57440 57440 0.04846938211710494 VLTHRWKL 8 Unmodified _VLTHRWKL_ 0 0 0 L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|181|3|sense;L1PA6_dup3227|chr8:125196204-125202353:-|6.844946527729751|0.1627551044092786|5.39|151.0|118|2|sense;L1PA3_dup7641|chr10:75558531-75564686:-|5.333025329153107|0.080861835760692|6.04|151.0|74|1|sense;L1PA3_dup4708|chr7:36552966-36559126:-|8.355253150863957|0.1345773371198736|5.96|151.0|171|3|sense;L1PA4_dup1697|chr2:224810487-224813045:-|3.7194535649328113|0.2736691103093728|3.76|151.0|28|1|sense;L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|170|3|sense;L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|20|2|sense L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|181|3|sense L1PA3_dup3346|chr5:50168797-50174963:-|1.0143964267998575|0.0635063596859291|4.0|151.0|181|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8218994140625 2 526.821818 1051.62908 0.0057031 3.0045E-06 0.083485 4.3982E-05 0.089188 4.6986E-05 526.8217594120675 26.952 0.26822 26.952 26.94 27.209 0 30 22 2 0 0 0 0.82752 1 3941 3941 0.69038 0 1 467640 49830 14253 31138 31152 57441 57441 0.10533452050663072 VLTLHHIH 8 Unmodified _VLTLHHIH_ 0 0 0 L1MB4_dup1765|chr3:128821179-128822049:+|1.289378034980998|0.0850436430628362|3.92|151.0|12|2|sense L1MB4_dup1765|chr3:128821179-128822049:+|1.289378034980998|0.0850436430628362|3.92|151.0|12|2|sense L1MB4_dup1765|chr3:128821179-128822049:+|1.289378034980998|0.0850436430628362|3.92|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 485.2861633300781 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 30.051 1 30.051 29.551 30.551 0 0 0 0 0.40581 1 4840 4840 2.8892 0 1 49831 10482 31139 31153 57442 57442 0.07004903608185487 VLTLHHYL 8 Unmodified _VLTLHHYL_ 0 0 0 REV__nc|ENSG00000133878|Q9BV47-2|DUSP26 REV__nc|ENSG00000133878|Q9BV47-2|DUSP26 MSMS UPN47_class_I_Rep_1 2 498.2855529785156 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 19.624 1 23.236 22.736 23.736 3.6118 0 0 0 0.40738 1 1838 1838 0.79363 0 1 + 49832 19075 31140 31154 57443 57443 0.06250368031078324 VLTLHHYL 8 Unmodified _VLTLHHYL_ 0 0 0 REV__nc|ENSG00000133878|Q9BV47-2|DUSP26 REV__nc|ENSG00000133878|Q9BV47-2|DUSP26 MSMS UPN48_class_I_Rep_3 7 498.2859802246094 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 21.307 1 24.973 24.473 25.473 3.6667 0 0 0 0.40738 1 1978 1978 0.79363 0 1 + 49833 19075 31140 31154 57444 57444 0.06250368031078324 VLTLLHIV 8 Unmodified _VLTLLHIV_ 0 0 0 L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|41|3|anti-sense L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|41|3|anti-sense L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.3022766113281 2 454.302396 906.590239 0.02059 9.3543E-06 -0.32861 -0.00014929 -0.30802 -0.00013993 454.30218094496564 54.633 0.35163 58.134 57.97 58.321 3.5014 25 20 2 0 0 0 0.82752 1 12340 12340 8.5933 0 1 41348 49834 12111 31141 31155 57445 57445 0.13320726696269958 VLTLSKKGY 9 Unmodified _VLTLSKKGY_ 0 0 0 ENSG00000157837.16,SPPL3,chr12,-,I7.1,120791946,120810808|27|10.68|1|intron ENSG00000157837.16,SPPL3,chr12,-,I7.1,120791946,120810808|27|10.68|1|intron ENSG00000157837.16,SPPL3,chr12,-,I7.1,120791946,120810808|27|10.68|1|intron MSMS UPN46_class_I_Rep_3 1 504.80902099609375 2 504.808042 1007.60153 NaN NaN NaN NaN NaN NaN NaN 48.849 1 48.849 48.349 49.349 0 0 0 0 0.3264 1 10211 10211 9.3474 0.75416 1 49835 3780 31142 31156 57446 57446 0.09803503999751229 VLTPPDQLVI 10 Unmodified _VLTPPDQLVI_ 0 0 0 ENSG00000154229|ENST00000413366|PRKCA ENSG00000154229|ENST00000413366|PRKCA ENSG00000154229|ENST00000413366|PRKCA MSMS UPN47_class_I_Rep_1 2 547.8261108398438 2 547.826432 1093.63831 NaN NaN NaN NaN NaN NaN NaN 89.412 1 93.086 92.586 93.586 3.6738 0 0 0 0.53105 1 22358 22358 2.9952 0 1 49836 3665 31143 31157 57447 57447 0.0952375582564855 VLTRRLQI 8 Unmodified _VLTRRLQI_ 0 0 0 ENST00000490417.6_1_10:120900615-120900732:-|nuORF ENST00000490417.6_1_10:120900615-120900732:-|nuORF ENST00000490417.6_1_10:120900615-120900732:-|nuORF MSMS UPN47_class_I_Rep_1 2 499.8167419433594 2 499.827101 997.639649 NaN NaN NaN NaN NaN NaN NaN 61.487 1 64.858 64.358 65.358 3.3715 0 0 0 0.40738 1 14422 14422 0.79363 0 1 49837 7065 31144 31158 57448 57448 0.14073434705096588 VLTTKMMLI 9 Unmodified _VLTTKMMLI_ 0 0 0 REV__ENSG00000164961|ENST00000318410|WASHC5 REV__ENSG00000164961|ENST00000318410|WASHC5 MSMS UPN48_class_I_Rep_1 5 525.3097534179688 2 525.308506 1048.60246 NaN NaN NaN NaN NaN NaN NaN 95.89 1 99.502 99.002 100 3.6124 0 0 0 0.40038 1 23100 23100 0.6015 0 1 + 49838 20095 31145 31159 57449 57449 0.08010259052798574 VLTTSRRK 8 Unmodified _VLTTSRRK_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.8009033203125 2 480.801083 959.587613 0.13431 6.4577E-05 -0.24654 -0.00011854 -0.11223 -5.3958E-05 480.8008608549343 86.247 0.78321 89.619 89.327 90.11 3.3716 309 98 4 0 0 0 0.82752 1 21646 21646 8.5933 0 1 3124200 + 49839 25952 31146 31160 57450 57450 0.10620271291327299 VLTTSRRK 8 Unmodified _VLTTSRRK_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 480.801083 959.587613 0.26909 0.00012938 -0.42658 -0.0002051 -0.15749 -7.572E-05 480.800847454968 89.679 0.52381 89.679 89.371 89.895 0 -0.017884 -0.00012406 NaN 8.5933 158 47 5 NaN NaN NaN NaN 0 NaN NaN 0 10381000 + 49840 25952 31146 31160 0.10620271291327299 VLTTSRRK 8 Unmodified _VLTTSRRK_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 480.801083 959.587613 0.29936 0.00014393 -0.35208 -0.00016928 -0.05272 -2.5348E-05 480.80080181442537 86.286 1.0478 89.719 89.328 90.375 3.4329 0.022629 -5.2416E-05 NaN 8.5933 403 144 4 NaN NaN NaN NaN 0 NaN NaN 0 2401500 + 49841 25952 31146 31160 0.10620271291327299 VLTTSRRK 8 Unmodified _VLTTSRRK_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 480.801083 959.587613 0.13431 6.4577E-05 -0.24654 -0.00011854 -0.11223 -5.3958E-05 480.8008608549343 86.247 0.78321 89.619 89.327 90.11 3.3716 -0.0778 4.9073E-05 NaN 8.5933 309 98 4 NaN NaN NaN NaN 0 NaN NaN 0 3124200 + 49842 25952 31146 31160 0.10620271291327299 VLTTSRRK 8 Unmodified _VLTTSRRK_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 480.801083 959.587613 0.23504 0.00011301 -0.28601 -0.00013751 -0.050962 -2.4503E-05 480.8008804558492 86.056 1.1011 89.762 89.235 90.336 3.7058 0.065133 1.112E-05 NaN 8.5933 419 133 4 NaN NaN NaN NaN 0 NaN NaN 0 6539600 + 49843 25952 31146 31160 0.10620271291327299 VLTTSRRK 8 Unmodified _VLTTSRRK_ 0 0 0 REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense REV__L1MB4_dup2794|chr6:2358283-2359131:-|1.5834802420137677|0.3469696118442911|2.19|151.0|22|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 480.801083 959.587613 0.24553 0.00011805 -0.28723 -0.0001381 -0.041706 -2.0052E-05 480.80089351520377 85.935 0.95724 89.705 89.285 90.242 3.7701 0.0079217 9.9391E-06 NaN 8.5933 394 116 4 NaN NaN NaN NaN 0 NaN NaN 0 6735200 + 49844 25952 31146 31160 0.10620271291327299 VLTTTRRA 8 Unmodified _VLTTTRRA_ 0 0 0 nc|ENSG00000120594|Q6UX71-3|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENSG00000120594|ENST00000377252|PLXDC2 nc|ENSG00000120594|Q6UX71-3|PLXDC2 nc|ENSG00000120594|Q6UX71-3|PLXDC2 MSMS UPN46_class_I_Rep_3 1 459.280029296875 2 459.279983 916.545414 NaN NaN NaN NaN NaN NaN NaN 113.62 1 113.62 113.12 114.12 0 0 0 0 0.40746 1 28066 28066 0.69038 0 1 49845 2328 31147 31161 57451 57451 0.08380295882943756 VLTYKCELN 9 Unmodified _VLTYKCELN_ 0 0 0 L1PA7_dup407|chr1:107848332-107850720:+|1.65146112117786|0.0106972493582566|7.27|150.0|20|1|sense;L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|50|2|sense L1PA7_dup407|chr1:107848332-107850720:+|1.65146112117786|0.0106972493582566|7.27|150.0|20|1|sense L1PA7_dup407|chr1:107848332-107850720:+|1.65146112117786|0.0106972493582566|7.27|150.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 542.295166015625 2 541.781167 1081.54778 0.40341 0.00021856 -0.056271 -3.0487E-05 0.34714 0.00018807 541.7809614363407 62.295 0.20405 65.554 65.422 65.626 3.2594 25 16 2 0 0 0 0.41259 1 14708 14708 7.2892 0.56607 1 87783 49846 13680 31148 31162 57452 57452 0.01026963505751155 VLVALKRA 8 Unmodified _VLVALKRA_ 0 0 0 ENST00000533331.5_1_11:14535061-14541920:-|nuORF;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF;ENST00000415494.1_1_X:79965525-79965963:+|nuORF;ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1 ENST00000533331.5_1_11:14535061-14541920:-|nuORF ENST00000533331.5_1_11:14535061-14541920:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 435.30029296875 2 435.300188 868.585822 0.12501 5.4417E-05 -0.17146 -7.4635E-05 -0.046445 -2.0218E-05 435.30019558332214 66.255 0.20627 69.742 69.69 69.897 3.4866 24 15 2 0 0 0 0.82752 1 15156 15156 0.79363 0 1 247160 49847 7309 31149 31163 57453 57453 0.14627262273347696 VLVALPLR 8 Unmodified _VLVALPLR_ 0 0 0 REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 440.7994079589844 2 440.802563 879.590573 -0.19159 -8.4453E-05 -3.1152 -0.0013732 -3.3068 -0.0014576 440.7994946936928 83.733 0.34193 87.145 86.929 87.271 3.4116 52 40 2 0 0 0 0.82752 1 20867 20867 0.79363 0 1 69745 + 49848 21642 31150 31164 57454 57454 0.1459614641612461 VLVALPLR 8 Unmodified _VLVALPLR_ 0 0 0 REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 440.802563 879.590573 -0.19159 -8.4453E-05 -3.1152 -0.0013732 -3.3068 -0.0014576 440.7994946936928 83.733 0.34193 87.145 86.929 87.271 3.4116 0.047348 0.00095093 NaN 0.79363 52 40 2 NaN NaN NaN NaN 0 NaN NaN 0 69745 + 49849 21642 31150 31164 0.1459614641612461 VLVALPLR 8 Unmodified _VLVALPLR_ 0 0 0 REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 440.802563 879.590573 0.1202 5.2984E-05 -5.3559 -0.0023609 -5.2357 -0.0023079 440.79932033916134 83.369 0.14346 87.05 86.953 87.096 3.6814 -0.047348 -0.0010245 NaN 0.79363 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 95844 + 49850 21642 31150 31164 0.1459614641612461 VLVASPRK 8 Unmodified _VLVASPRK_ 0 0 0 L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|127|2|anti-sense L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|127|2|anti-sense L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|127|2|anti-sense MSMS UPN48_class_I_Rep_1 5 435.2998962402344 2 435.281995 868.549437 NaN NaN NaN NaN NaN NaN NaN 64.171 1 67.629 67.129 68.129 3.4578 0 0 0 0.40604 1 14506 14506 2.5775 0 1 49851 14982 31151 31165 57455 57455 0.10990385376658196 VLVDQTTGL 9 Unmodified _VLVDQTTGL_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MSMS UPN47_class_I_Rep_3 4 473.26763916015625 2 473.266207 944.517862 0.046716 2.2109E-05 1.2504 0.00059176 1.2971 0.00061387 473.26686656021576 53.56 0.43194 56.755 56.505 56.937 3.1948 41 26 2 0 0 0 0.12795 1 12113 12113 28.495 5.7582 1 67862 49852 1015 31152 31166 57456 57456 0.04338347832026557 VLVDQTTGL 9 Unmodified _VLVDQTTGL_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 473.266207 944.517862 0.03886 1.8391E-05 0.96349 0.00045599 1.0024 0.00047438 473.266680464152 53.197 0.39437 56.725 56.557 56.951 3.5278 0.0035268 -0.00017075 NaN 28.495 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 70391 49853 1015 31152 31166 0.04338347832026557 VLVDQTTGL 9 Unmodified _VLVDQTTGL_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 473.266207 944.517862 0.16997 8.044E-05 1.3156 0.00062261 1.4855 0.00070305 473.26701015740315 53.357 0.39998 56.684 56.526 56.926 3.3266 -0.037363 0.00016248 NaN 28.495 47 27 2 NaN NaN NaN NaN 0 NaN NaN 0 82915 49854 1015 31152 31166 0.04338347832026557 VLVEVVVGR 9 Unmodified _VLVEVVVGR_ 0 0 0 L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|254|2|anti-sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|254|2|anti-sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|254|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.30926513671875 2 485.30821 968.601866 NaN NaN NaN NaN NaN NaN NaN 60.953 1 64.118 63.618 64.618 3.1651 0 0 0 0.15455 1 14345 14345 19.257 1.1106 1 49855 15179 31153 31167 57457 57457 0.11630923719621933 VLVFKSKP 8 Unmodified _VLVFKSKP_ 0 0 0 REV__ENSG00000089248|ENST00000261735|ERP29 REV__ENSG00000089248|ENST00000261735|ERP29 MSMS UPN48_class_I_Rep_3 7 459.2928161621094 2 459.294571 916.574589 NaN NaN NaN NaN NaN NaN NaN 104.7 1 108.41 107.91 108.91 3.7192 0 0 0 0.40625 1 24720 24720 2.3027 0 1 + 49856 18004 31154 31168 57458 57458 0.11296440179228284 VLVFLDSHCE 10 Unmodified _VLVFLDSHCE_ 0 0 0 ENSG00000106648|ENST00000392800|GALNTL5;ENSG00000178234|ENST00000430044|GALNT11 ENSG00000106648|ENST00000392800|GALNTL5;ENSG00000178234|ENST00000430044|GALNT11 ENSG00000106648|ENST00000392800|GALNTL5 MSMS UPN47_class_I_Rep_2 3 581.2362670898438 2 581.284074 1160.5536 NaN NaN NaN NaN NaN NaN NaN 21.887 1 25.312 24.812 25.812 3.4241 0 0 0 0.53105 1 2516 2516 1.6526 0.17072 1 49857 1798;4820 31155 31169 57459 57459 -0.02025937982580217 VLVFVSSSPF 10 Unmodified _VLVFVSSSPF_ 0 0 0 L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|239|3|anti-sense L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|239|3|anti-sense L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|239|3|anti-sense MSMS UPN48_class_I_Rep_2 6 541.28759765625 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 46.973 1 50.722 50.222 51.222 3.7494 0 0 0 0.53105 1 9241 9241 6.7232 1.4925 1 49858 13606 31156 31170 57460 57460 0.04847797762840855 VLVFVSSSPF 10 Unmodified _VLVFVSSSPF_ 0 0 0 L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|239|3|anti-sense L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|239|3|anti-sense L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|239|3|anti-sense MSMS UPN48_class_I_Rep_3 7 541.2882080078125 2 541.30005 1080.58555 NaN NaN NaN NaN NaN NaN NaN 47.246 1 50.883 50.383 51.383 3.6363 0 0 0 0.53105 1 9255 9255 6.7232 1.4925 1 49859 13606 31156 31170 57461 57461 0.04847797762840855 VLVFYFHG 8 Unmodified _VLVFYFHG_ 0 0 0 L1MB7_dup17766|chr14:102671667-102672215:-|1.0481033146682612|0.0080908088695301|7.02|150.0|30|1|anti-sense L1MB7_dup17766|chr14:102671667-102672215:-|1.0481033146682612|0.0080908088695301|7.02|150.0|30|1|anti-sense L1MB7_dup17766|chr14:102671667-102672215:-|1.0481033146682612|0.0080908088695301|7.02|150.0|30|1|anti-sense MSMS UPN47_class_I_Rep_2 3 491.2713928222656 2 491.263271 980.511988 NaN NaN NaN NaN NaN NaN NaN 58.592 1 61.874 61.374 62.374 3.2818 0 0 0 0.40738 1 13575 13575 0.79363 0 1 49860 10748 31157 31171 57462 57462 0.020952941110408574 VLVGFQEH 8 Unmodified _VLVGFQEH_ 0 0 0 L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|214|1|anti-sense L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|214|1|anti-sense L1PA4_dup5874|chr8:47297458-47303592:-|2.470741193864934|0.0989431050701503|4.64|151.0|214|1|anti-sense MSMS UPN46_class_I_Rep_3 1 464.5335998535156 2 464.747985 927.481417 NaN NaN NaN NaN NaN NaN NaN 48.372 1 48.372 47.872 48.872 0 0 0 0 0.40738 1 10073 10073 0.79363 0 1 49861 14370 31158 31172 57463 57463 0.01477515725991907 VLVGYIFQ 8 Unmodified _VLVGYIFQ_ 0 0 0 L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|137|2|anti-sense L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|137|2|anti-sense L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|137|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 469.7710876464844 2 469.770929 937.527304 0.1441 6.7696E-05 0.4582 0.00021525 0.6023 0.00028294 469.7711183006792 55.671 0.06744 59.179 59.129 59.196 3.5082 5 3 2 0 0 0 0.82752 1 11909 11909 0.79363 0 1 266620 49862 13300 31159 31173 57464 57464 0.05604160908239919 VLVGYIFQ 8 Unmodified _VLVGYIFQ_ 0 0 0 L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|137|2|anti-sense L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|137|2|anti-sense L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|137|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 469.770929 937.527304 0.33044 0.00015523 0.65442 0.00030743 0.98486 0.00046266 469.7711187527981 55.403 0.052139 58.958 58.916 58.968 3.5559 -0.031556 4.5143E-05 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 441130 49863 13300 31159 31173 0.05604160908239919 VLVHFSHLK 9 Unmodified _VLVHFSHLK_ 0 0 0 REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|112|1|anti-sense REV__HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|112|1|anti-sense MSMS UPN46_class_I_Rep_3 1 540.3215942382812 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 22.864 1 22.864 22.364 23.364 0 0 0 0 0.40038 1 2781 2781 0.6015 0 1 + 49864 23933 31160 31174 57465 57465 0.09258032330785682 VLVILMDVF 9 Unmodified _VLVILMDVF_ 0 0 0 ENST00000521468.1_1_8:124195447-124212099:+|nuORF;nc|ENSG00000147689|Q86UY5-3|FAM83A;ENSG00000147689|ENST00000690554|FAM83A ENST00000521468.1_1_8:124195447-124212099:+|nuORF ENST00000521468.1_1_8:124195447-124212099:+|nuORF MSMS UPN47_class_I_Rep_2 3 524.8089599609375 2 524.809196 1047.60384 NaN NaN NaN NaN NaN NaN NaN 65.984 1 69.243 68.743 69.743 3.2588 0 0 0 0.381 1 15824 15824 5.2307 0 1 49865 3486 31161 31175 57466 57466 0.08194216413198774 VLVKKPFPK 9 Unmodified _VLVKKPFPK_ 0 0 0 MLT1L_dup7430|chr10:87105506-87105889:-|1.8045285546342824|0.0184326302659251|6.61|151.0|25|2|anti-sense MLT1L_dup7430|chr10:87105506-87105889:-|1.8045285546342824|0.0184326302659251|6.61|151.0|25|2|anti-sense MLT1L_dup7430|chr10:87105506-87105889:-|1.8045285546342824|0.0184326302659251|6.61|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_3 7 528.3013305664062 2 528.35242 1054.69029 NaN NaN NaN NaN NaN NaN NaN 93.606 1 97.498 96.998 97.998 3.8914 0 0 0 0.4007 1 22186 22186 0.52476 0 1 49866 16489 31162 31176 57467 57467 0.1651296403008473 VLVKWLEL 8 Unmodified _VLVKWLEL_ 0 0 0 REV__ENST00000296412.12_1_4:100003131-100003182:-|nuORF REV__ENST00000296412.12_1_4:100003131-100003182:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.31756591796875 2 500.315503 998.616454 NaN NaN NaN NaN NaN NaN NaN 60.682 1 64.064 63.564 64.564 3.3815 0 0 0 0.40364 1 14177 14177 5.7604 0.52976 1 + 49867 21654 31163 31177 57468 57468 0.11708995867729755 VLVLSHLC 8 Unmodified _VLVLSHLC_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|243|1|anti-sense;L1PREC2_dup5985|chr12:76514438-76515681:-|5.1115105851291|0.0168234356491748|8.25|151.0|49|1|anti-sense;L1PREC2_dup3475|chr7:106900200-106902336:-|2.621735337794696|0.0810379724375732|5.02|151.0|77|1|anti-sense;L1PA12_dup912|chr9:27073160-27075279:-|1.1146772451023463|0.321966809920392|1.79|151.0|99|3|anti-sense;L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|120|3|anti-sense;L1PA12_dup409|chr3:121962272-121967376:+|14.730921009523088|0.3282399852445016|5.49|151.0|188|1|anti-sense;L1PA15_dup2581|chr5:75534498-75537594:-|1.276812117117233|0.0996837195418691|3.68|150.0|180|3|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|243|1|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|243|1|anti-sense MSMS UPN47_class_I_Rep_3 4 442.25665283203125 2 442.257131 882.499709 NaN NaN NaN NaN NaN NaN NaN 78.194 1 81.476 80.976 81.976 3.2816 0 0 0 0.40738 1 19492 19492 0.79363 0 1 49868 13644 31164 31178 57469 57469 0.0537593437633177 VLVLVNEP 8 Unmodified _VLVLVNEP_ 0 0 0 REV__L1ME3A_dup1193|chr1:247151496-247152017:+|1.9802332689239397|0.1798377927861331|3.46|151.0|26|1|anti-sense REV__L1ME3A_dup1193|chr1:247151496-247152017:+|1.9802332689239397|0.1798377927861331|3.46|151.0|26|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.7684326171875 2 441.768386 881.522219 0.16404 7.2467E-05 -0.50515 -0.00022316 -0.34111 -0.00015069 441.7681747185204 100.77 0.12222 100.77 100.72 100.84 0 16 13 2 0 0 0 0.82752 1 24568 24568 0.79363 0 1 113870 + 49869 27987 31165 31179 57470 57470 0.07671857045602337 VLVLVWTY 8 Unmodified _VLVLVWTY_ 0 0 0 L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|259|3|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|259|3|anti-sense L1ME1_dup1271|chr1:110881214-110885268:-|8.868837404172858|0.0732641797496935|6.92|151.0|259|3|anti-sense MSMS UPN46_class_I_Rep_3 1 496.9919738769531 2 496.794404 991.574254 NaN NaN NaN NaN NaN NaN NaN 47.024 1 47.024 46.524 47.524 0 0 0 0 0.40404 1 9689 9689 5.2307 0 1 49870 12203 31166 31180 57471 57471 0.07813020459354902 VLVMKFLP 8 Unmodified _VLVMKFLP_ 0 0 0 L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|177|2|anti-sense;L1PA5_dup107|chr1:51474690-51476424:-|1.2939145085216694|0.044437530942752|4.86|151.0|64|1|anti-sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|177|2|anti-sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|177|2|anti-sense MSMS UPN46_class_I_Rep_3 1 473.7938232421875 2 473.793349 945.572146 NaN NaN NaN NaN NaN NaN NaN 83.43 1 83.43 82.93 83.93 0 0 0 0 0.40738 1 19816 19816 0.79363 0 1 49871 14422 31167 31181 57472 57472 0.09718268449910283 VLVMKFLP 8 Unmodified _VLVMKFLP_ 0 0 0 L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|177|2|anti-sense;L1PA5_dup107|chr1:51474690-51476424:-|1.2939145085216694|0.044437530942752|4.86|151.0|64|1|anti-sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|177|2|anti-sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|177|2|anti-sense MSMS UPN48_class_I_Rep_1 5 473.7930603027344 2 473.793349 945.572146 NaN NaN NaN NaN NaN NaN NaN 79.817 1 83.366 82.866 83.866 3.5487 0 0 0 0.40738 1 19064 19064 0.79363 0 1 49872 14422 31167 31181 57473 57473 0.09718268449910283 VLVNVTIFEIG 11 Unmodified _VLVNVTIFEIG_ 0 0 0 MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|8|2|sense MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|8|2|sense MLT1C_dup19102|chr21:34925281-34925731:+|1.8064047087173456|0.0027102662767082|9.38|149.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 602.3546142578125 2 602.352814 1202.69108 NaN NaN NaN NaN NaN NaN NaN 76.467 1 80.05 79.55 80.55 3.5831 0 0 0 0.38417 1 18011 18011 1.1933 0 1 49873 16309 31168 31182 57474 57474 0.09783713888464263 VLVPARRA 8 Unmodified _VLVPARRA_ 0 0 0 REV__ENST00000401827.7_1_8:66753887-66754151:-|nuORF REV__ENST00000401827.7_1_8:66753887-66754151:-|nuORF MSMS UPN48_class_I_Rep_2 6 441.2978210449219 2 441.287611 880.56067 NaN NaN NaN NaN NaN NaN NaN 67.223 1 70.719 70.219 71.219 3.4964 0 0 0 0.40738 1 15419 15419 0.79363 0 1 + 49874 22161 31169 31183 57475 57475 0.11561207470788304 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7994079589844 2 440.796946 879.57934 0.13467 5.9363E-05 3.1673 0.0013961 3.3019 0.0014555 440.7993091641826 76.847 0.33772 76.847 76.554 76.891 0 48 36 2 0 0 0 0.82752 1 17901 17901 0.69038 0 1 104120 + 49875 17248 31170 31184 57476 57476 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29705810546875 2 440.796946 879.57934 -0.0066886 -2.9483E-06 3.527 0.0015547 3.5203 0.0015517 440.7994264484135 54.661 1.2149 58.162 57.791 59.006 3.5014 100 70 2 0 0 0 0.82752 1 12572 12572 0.69038 0 1 159660 + 49876 17248 31170 31184 57477 57477 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7994689941406 2 440.796946 879.57934 -0.41953 -0.00018493 2.3942 0.0010553 1.9746 0.00087041 440.79949028206283 47.353 0.73021 50.702 50.188 50.918 3.3492 88 48 2 0 0 0 0.82752 1 10137 10137 0.79363 0 1 109780 + 49877 17248 31170 31184 57478 57478 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.2973937988281 2 440.796946 879.57934 0.06485 2.8586E-05 2.0219 0.00089125 2.0867 0.00091983 440.79945487349966 24.774 1.0735 28.341 27.841 28.914 3.5667 194 125 2 0 0 0 0.82752 1 2688 2688 0.79363 0 1 106440 + 49878 17248 31170 31184 57479 57479 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.29742431640625 2 440.796946 879.57934 0.10753 4.7397E-05 1.7426 0.00076813 1.8501 0.00081553 440.79932775056585 59.141 0.75837 62.621 62.191 62.949 3.4801 70 47 2 0 0 0 0.82752 1 12907 12907 0.79363 0 1 111050 + 49879 17248 31170 31184 57480 57480 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.2975769042969 2 440.796946 879.57934 0.097314 4.2896E-05 2.4906 0.0010978 2.5879 0.0011407 440.7992865749636 50.32 1.3612 54.015 53.484 54.846 3.6946 137 86 2 0 0 0 0.82752 1 10308 10308 0.69038 0 1 127160 + 49880 17248 31170 31184 57481 57481 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.2800598144531 2 440.796946 879.57934 0.14779 6.5145E-05 1.8381 0.00081022 1.9859 0.00087537 440.7994038862202 65.932 0.83514 69.418 69.041 69.876 3.4866 95 58 2 0 0 0 0.82752 1 15056 15056 0.69038 0 1 131600 + 49881 17248 31170 31184 57482 57482 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7987976074219 2 440.796946 879.57934 0.15156 6.6809E-05 2.2552 0.0009941 2.4068 0.0010609 440.79920170843496 61.604 0.48574 65.117 64.799 65.284 3.5128 48 40 2 0 0 0 0.82752 1 13603 13603 0.69038 0 1 121370 + 49882 17248 31170 31184 57483 57483 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.13467 5.9363E-05 3.1673 0.0013961 3.3019 0.0014555 440.7993091641826 76.847 0.33772 76.847 76.554 76.891 0 0.13472 0.00040427 NaN 0.69038 48 36 2 NaN NaN NaN NaN 0 NaN NaN 0 104120 + 49883 17248 31170 31184 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.078826 3.4746E-05 3.7041 0.0016328 3.7829 0.0016675 440.7991723338143 58.263 0.084854 58.263 58.226 58.311 0 0.050364 0.00010791 NaN 0.69038 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 79821 + 49884 17248 31170 31184 0.1347332432200119 VLVPLLLN 8 Unmodified _VLVPLLLN_ 0 0 0 REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense REV__Arthur1_dup25|chr1:44461250-44461900:+|5.394907335249646|0.016494159630618|8.35|150.0|14|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 440.796946 879.57934 0.070106 3.0903E-05 2.1345 0.00094088 2.2046 0.00097178 440.79936586320815 46.817 0.66393 50.453 50.103 50.767 3.6363 -0.098775 -0.00039055 NaN 0.79363 59 40 2 NaN NaN NaN NaN 0 NaN NaN 0 110400 + 49885 17248 31170 31184 0.1347332432200119 VLVPLLPQSTP 11 Unmodified _VLVPLLPQSTP_ 0 0 0 L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|70|2|sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|70|2|sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|70|2|sense MSMS UPN48_class_I_Rep_3 7 582.3533325195312 2 582.355357 1162.69616 NaN NaN NaN NaN NaN NaN NaN 96.931 1 100.84 100.34 101.34 3.9084 0 0 0 0.38417 1 22977 22977 0.96228 0.36078 1 49886 9520 31171 31185 57484 57484 0.12132017751082458 VLVQGRKVRRY 11 Unmodified _VLVQGRKVRRY_ 0 0 0 ENST00000483209.5_1_3:118930805-118931024:-|nuORF ENST00000483209.5_1_3:118930805-118931024:-|nuORF ENST00000483209.5_1_3:118930805-118931024:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 458.6236877441406 3 458.621122 1372.84154 0.20848 9.5615E-05 4.2829 0.0019642 4.4914 0.0020599 458.6228499046686 105.44 0.085724 105.44 105.41 105.5 0 12 8 3 0 0 0 0.68081 1 25721 25721 0.45452 0.29519 1 1192100 49887 7010 31172 31186 57485 57485 0.1700291839063084 VLVQGRKVRRY 11 Unmodified _VLVQGRKVRRY_ 0 0 0 ENST00000483209.5_1_3:118930805-118931024:-|nuORF ENST00000483209.5_1_3:118930805-118931024:-|nuORF ENST00000483209.5_1_3:118930805-118931024:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 458.621122 1372.84154 0.17448 8.0019E-05 6.1786 0.0028336 6.3531 0.0029137 458.6237936987914 101.73 0.04052 105.46 105.44 105.48 3.7252 0.010044 0.00051002 NaN 0.45452 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 106300 49888 7010 31172 31186 0.1700291839063084 VLVRFHHL 8 Unmodified _VLVRFHHL_ 0 0 0 L1ME1_dup16478|chr9:77961589-77962461:+|2.101023537859047|0.0178976912369237|6.88|151.0|30|3|sense L1ME1_dup16478|chr9:77961589-77962461:+|2.101023537859047|0.0178976912369237|6.88|151.0|30|3|sense L1ME1_dup16478|chr9:77961589-77962461:+|2.101023537859047|0.0178976912369237|6.88|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 511.109375 2 510.808711 1019.60287 NaN NaN NaN NaN NaN NaN NaN 43.371 1 43.371 42.871 43.871 0 0 0 0 0.40738 1 8654 8654 0.79363 0 1 49889 12247 31173 31187 57486 57486 0.09385182879179865 VLVRPWQKA 9 Unmodified _VLVRPWQKA_ 0 0 0 REV__HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|163|3|sense REV__HERVE_a-int_dup96|chrX:56024954-56031717:-|1.9674580879004877|0.1365172086110313|3.85|150.0|163|3|sense MSMS UPN46_class_I_Rep_3 1 548.8348999023438 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 24.418 1 24.418 23.918 24.918 0 0 0 0 0.4007 1 3207 3207 0.52476 0 1 + 49890 23637 31174 31188 57487 57487 0.11129721222141598 VLVSCNQAMF 10 Unmodified _VLVSCNQAMF_ 0 0 0 REV__L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|228|3|anti-sense REV__L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|228|3|anti-sense MSMS UPN46_class_I_Rep_3 1 556.2675170898438 2 556.26737 1110.52019 NaN NaN NaN NaN NaN NaN NaN 26.429 1 26.429 25.929 26.929 0 0 0 0 0.53105 1 3778 3778 6.2058 0 1 + 49891 26561 31175 31189 57488 57488 -0.030652630261556624 VLVSTARFA 9 Unmodified _VLVSTARFA_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|96|2|anti-sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|96|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.2846984863281 2 482.284734 962.554916 0.13641 6.579E-05 -0.14612 -7.0471E-05 -0.0097063 -4.6812E-06 482.2846008515194 48.703 1.9219 52.049 51.562 53.484 3.3465 280 113 4 0 0 0 0.061943 8 10498 10452;10498;10626;10664;10705;10746;10815;10858 43.858 4.7636 1 2385100 + 49892 24719 31176 31190 57489;57490;57491;57492;57493;57494;57495;57496 57490 0.07214064168454115 VLVSTARFA 9 Unmodified _VLVSTARFA_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|96|2|anti-sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|96|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.28472900390625 2 482.284734 962.554916 0.091891 4.4318E-05 -0.07775 -3.7498E-05 0.014141 6.82E-06 482.28462847451004 48.804 1.6403 52.038 51.577 53.217 3.2345 260 90 4 0 0 0 0.061943 8 10599 10551;10599;10722;10766;10810;10865;10914;10971 43.858 4.7636 1 2556100 + 49893 24719 31176 31190 57497;57498;57499;57500;57501;57502;57503;57504 57498 0.07214064168454115 VLVSTARFA 9 Unmodified _VLVSTARFA_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|96|2|anti-sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|96|2|anti-sense MSMS UPN47_class_I_Rep_3 4 482.28424072265625 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 50.053 1 53.28 52.78 53.78 3.2262 0 0 0 0.2408 1 11024 11024 13.906 0 1 + 49894 24719 31176 31190 57505 57505 0.07214064168454115 VLVSVDQLL 9 Unmodified _VLVSVDQLL_ 0 0 0 REV__ENST00000482881.1_1_1:46425082-46476635:+|nuORF REV__ENST00000482881.1_1_1:46425082-46476635:+|nuORF MSMS UPN46_class_I_Rep_3 1 493.31195068359375 2 493.30005 984.585547 NaN NaN NaN NaN NaN NaN NaN 45.137 1 45.137 44.637 45.637 0 0 0 0 0.381 1 9151 9151 5.2307 0 1 + 49895 22579 31177 31191 57506 57506 0.09263797762855575 VLVTTTQLI 9 Unmodified _VLVTTTQLI_ 0 0 0 nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2;nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4 nc|ENSG00000064655|O00167-2|EYA2 nc|ENSG00000064655|O00167-2|EYA2 MSMS UPN48_class_I_Rep_1 5 494.3076171875 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 79.55 1 83.099 82.599 83.599 3.5487 0 0 0 0.37692 1 18993 18993 6.2058 0 1 49896 993 31178 31192 57507 57507 0.10736084279915303 VLVTTTQLI 9 Unmodified _VLVTTTQLI_ 0 0 0 nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2;nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4 nc|ENSG00000064655|O00167-2|EYA2 nc|ENSG00000064655|O00167-2|EYA2 MSMS UPN48_class_I_Rep_1 5 494.308349609375 2 494.307875 986.601197 NaN NaN NaN NaN NaN NaN NaN 79.681 1 83.23 82.73 83.73 3.5487 0 0 0 0.37692 1 19029 19029 6.2058 0 1 49897 993 31178 31192 57508 57508 0.10736084279915303 VLVTTTQLI 9 Unmodified _VLVTTTQLI_ 0 0 0 nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2;nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4 nc|ENSG00000064655|O00167-2|EYA2 nc|ENSG00000064655|O00167-2|EYA2 MULTI-MSMS UPN48_class_I_Rep_2 6 494.3078918457031 2 494.307875 986.601197 0.26957 0.00013325 0.15011 7.4202E-05 0.41969 0.00020745 494.3078080287709 79.456 0.32282 83.089 82.929 83.252 3.6331 42 35 2 0 0 0 0.43153 2 18851 18851;18897 6.2058 0 1 93136 49898 993 31178 31192 57509;57510 57509 0.10736084279915303 VLVVFMFLEIC 11 Unmodified _VLVVFMFLEIC_ 0 0 0 L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|36|1|anti-sense L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|36|1|anti-sense L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|36|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.2398376464844 3 438.239639 1311.69709 0.0051945 2.2764E-06 0.28662 0.00012561 0.29181 0.00012788 438.2397089942336 65.751 1.0145 69.108 68.642 69.656 3.3576 139 61 3 0 0 0 0.47271 1 15683 15683 8.4443 3.0416 1 300760 49899 8887 31179 31193 57511 57511 0.05370772804167245 VLVVFMFLEIC 11 Unmodified _VLVVFMFLEIC_ 0 0 0 L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|36|1|anti-sense L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|36|1|anti-sense L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|36|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 438.2397155761719 3 438.239639 1311.69709 0.18245 7.9956E-05 0.087139 3.8188E-05 0.26959 0.00011814 438.2396288972705 65.748 1.0364 69.256 68.901 69.937 3.5077 176 72 3 0 0 0 0.47271 1 14893 14893 8.4443 1.8209 1 497890 49900 8887 31179 31193 57512 57512 0.05370772804167245 VLVVIGRVSSV 11 Unmodified _VLVVIGRVSSV_ 0 0 0 REV__ENST00000514858.5_1_4:2172840-2209821:-|nuORF REV__ENST00000514858.5_1_4:2172840-2209821:-|nuORF MSMS UPN48_class_I_Rep_2 6 564.3593139648438 2 564.360973 1126.70739 NaN NaN NaN NaN NaN NaN NaN 74.24 1 77.818 77.318 78.318 3.5779 0 0 0 0.38417 1 17461 17461 0.96228 0.43751 1 + 49901 18962 31180 31194 57513 57513 0.14910839845219925 VLVVPVHWW 9 Unmodified _VLVVPVHWW_ 0 0 0 REV__AluJb_dup77140|chr11:35227192-35227485:-|1.003897106744532|0.3213273507168805|1.64|151.0|2|1|sense REV__AluJb_dup77140|chr11:35227192-35227485:-|1.003897106744532|0.3213273507168805|1.64|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 567.8280639648438 2 567.826569 1133.63859 NaN NaN NaN NaN NaN NaN NaN 113.34 1 117.01 116.51 117.51 3.663 0 0 0 0.40038 1 27047 27047 0.6015 0 1 + 49902 16963 31181 31195 57514 57514 0.07711220336182123 VLVYDEHILH 10 Unmodified _VLVYDEHILH_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 619.833984375 2 619.332413 1236.65027 0.34887 0.00021607 -0.29467 -0.0001825 0.054202 3.3569E-05 619.3322369353303 52.871 0.20869 56.43 56.283 56.492 3.5585 14 10 2 0 0 0 0.54466 1 11795 11795 6.2058 2.9245 1 54707 49903 12326 31182 31196 57515 57515 0.04141372568847146 VLVYDEHILH 10 Unmodified _VLVYDEHILH_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 619.3334350585938 2 619.332413 1236.65027 0.44967 0.0002785 0.069794 4.3226E-05 0.51946 0.00032172 619.332453383848 53.051 0.45174 56.57 56.322 56.773 3.5192 49 31 2 0 0 0 0.51565 2 11126 11075;11126 10.074 5.1769 1 141860 49904 12326 31182 31196 57516;57517 57517 0.04141372568847146 VLVYDEHILH 10 Unmodified _VLVYDEHILH_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 619.3341674804688 2 619.332413 1236.65027 NaN NaN NaN NaN NaN NaN NaN 53.321 1 56.84 56.34 57.34 3.5192 0 0 0 0.53105 1 11179 11179 3.2813 1.6287 1 49905 12326 31182 31196 57518 57518 0.04141372568847146 VLVYDEHILH 10 Unmodified _VLVYDEHILH_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 619.3336791992188 2 619.332413 1236.65027 0.5462 0.00033828 -0.16347 -0.00010124 0.38272 0.00023703 619.3323494209261 52.893 0.56077 56.502 56.33 56.891 3.6098 43 33 2 0 0 0 0.46161 3 11077 11014;11032;11077 14.838 7.7366 1 113510 49906 12326 31182 31196 57519;57520;57521 57521 0.04141372568847146 VLVYDEHILH 10 Unmodified _VLVYDEHILH_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.3342895507812 2 619.332413 1236.65027 0.44237 0.00027397 0.38721 0.00023981 0.82957 0.00051378 619.3328245126825 53.035 0.47151 56.618 56.315 56.787 3.5836 39 26 2 0 0 0 0.38932 3 11024 10998;11024;11041 20.454 9.6297 1 140780 49907 12326 31182 31196 57522;57523;57524 57523 0.04141372568847146 VLVYDEHILH 10 Unmodified _VLVYDEHILH_ 0 0 0 L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense L1ME1_dup25137|chr14:89520389-89521031:+|1.839611922009775|0.0047215445451036|8.61|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 619.3319091796875 2 619.332413 1236.65027 0.43969 0.00027231 -0.53734 -0.00033279 -0.097649 -6.0477E-05 619.3321867884307 53.24 0.070332 56.824 56.8 56.87 3.5836 7 4 2 0 0 0 0.56033 1 11082 11082 3.5965 0.60125 1 66358 49908 12326 31182 31196 57525 57525 0.04141372568847146 VLVYFHYIS 9 Unmodified _VLVYFHYIS_ 0 0 0 REV__L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|161|1|anti-sense REV__L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|161|1|anti-sense MSMS UPN46_class_I_Rep_3 1 570.713134765625 2 570.808042 1139.60153 NaN NaN NaN NaN NaN NaN NaN 74.947 1 74.947 74.447 75.447 0 0 0 0 0.35339 1 17399 17399 7.9102 1.187 1 + 49909 25265 31183 31197 57526 57526 0.03731503999733832 VLVYGAPPGR 10 Unmodified _VLVYGAPPGR_ 0 0 0 ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN ENSG00000176058|ENST00000409012|TPRN MSMS UPN47_class_I_Rep_3 4 514.7958984375 2 514.798009 1027.58147 NaN NaN NaN NaN NaN NaN NaN 16.186 1 19.548 19.048 20.048 3.3619 0 0 0 0.53105 1 966 966 1.4819 0.28856 1 49910 4747 31184 31198 57527 57527 0.06877753059779934 VLWCFGWL 8 Unmodified _VLWCFGWL_ 0 0 0 REV__nc|ENSG00000148053|Q16620-2|NTRK2 REV__nc|ENSG00000148053|Q16620-2|NTRK2 MSMS UPN48_class_I_Rep_2 6 512.2791748046875 2 512.259674 1022.50479 NaN NaN NaN NaN NaN NaN NaN 75.643 1 79.244 78.744 79.744 3.6011 0 0 0 0.40581 1 17845 17845 2.8892 0.31174 1 + 49911 19576 31185 31199 57528 57528 -0.005557617610406851 VLWCLGLAL 9 Unmodified _VLWCLGLAL_ 0 0 0 REV__ENSG00000282608|ENST00000241356|ADORA3 REV__ENSG00000282608|ENST00000241356|ADORA3 MULTI-SECPEP UPN47_class_I_Rep_1 2 494.7351379394531 2 494.288431 986.562309 0.18658 9.2222E-05 1.1807 0.0005836 1.3673 0.00067583 494.2888484788068 59.64 0.053555 63.038 63.007 63.061 3.3982 4 2 2 0 0 0 0.12182 1 13861 13861 5.2307 1.2863 1 26261 + 49912 21450 31186 31200 57529 57529 0.0684908044452186 VLWDTVYYH 9 Unmodified _VLWDTVYYH_ 0 0 0 nc|ENSG00000188263|Q6ZVW7-2|IL17REL;ENSG00000188263|ENST00000695950|IL17REL nc|ENSG00000188263|Q6ZVW7-2|IL17REL nc|ENSG00000188263|Q6ZVW7-2|IL17REL MSMS UPN48_class_I_Rep_3 7 598.2918090820312 2 598.292756 1194.57096 NaN NaN NaN NaN NaN NaN NaN 64.851 1 68.359 67.859 68.859 3.5083 0 0 0 0.40038 1 14610 14610 0.6015 0 1 49913 5223 31187 31201 57530 57530 -0.018542743852776766 VLWEIESEL 9 Unmodified _VLWEIESEL_ 0 0 0 ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK MSMS UPN47_class_I_Rep_3 4 559.2922973632812 2 559.292422 1116.57029 NaN NaN NaN NaN NaN NaN NaN 83.181 1 86.531 86.031 87.031 3.35 0 0 0 0.31276 1 20860 20860 10.074 1.9184 1 49914 3277 31188 31202 57531 57531 0.016668861750076758 VLWFDWDQ 8 Unmodified _VLWFDWDQ_ 0 0 0 MLT1H1_dup843|chr4:15781833-15782325:-|1.190941174902331|0.0257746430993782|5.53|151.0|19|1|anti-sense MLT1H1_dup843|chr4:15781833-15782325:-|1.190941174902331|0.0257746430993782|5.53|151.0|19|1|anti-sense MLT1H1_dup843|chr4:15781833-15782325:-|1.190941174902331|0.0257746430993782|5.53|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 554.7578125 2 554.758549 1107.50255 NaN NaN NaN NaN NaN NaN NaN 30.532 1 34.167 33.667 34.667 3.6351 0 0 0 0.40738 1 4482 4482 0.79363 0 1 49915 16442 31189 31203 57532 57532 -0.04690518965162482 VLWFFDLIS 9 Unmodified _VLWFFDLIS_ 0 0 0 REV__L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|254|2|anti-sense REV__L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|254|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.3089599609375 2 570.310418 1138.60628 0.51806 0.00029545 -1.9054 -0.0010867 -1.3874 -0.00079122 570.3092584772859 55.812 0.49892 59.122 58.929 59.428 3.3102 44 28 2 0 0 0 0.48846 1 12761 12761 1.8442 0 1 90681 + 49916 30060 31190 31204 57533 57533 0.0425238814250406 VLWKGIETW 9 Unmodified _VLWKGIETW_ 0 0 0 ENST00000477288.5_1_6:30882338-30882611:+|nuORF ENST00000477288.5_1_6:30882338-30882611:+|nuORF ENST00000477288.5_1_6:30882338-30882611:+|nuORF MSMS UPN47_class_I_Rep_1 2 566.3153686523438 2 566.313492 1130.61243 NaN NaN NaN NaN NaN NaN NaN 71.313 1 74.688 74.188 75.188 3.3751 0 0 0 0.39598 1 17379 17379 1.6526 0 1 49917 6975 31191 31205 57534 57534 0.05234906374039383 VLWKVGRI 8 Unmodified _VLWKVGRI_ 0 0 0 REV__Charlie1a_dup2697|chr7:152115140-152115774:+|1.1168081211537504|0.1541902465722866|2.86|151.0|19|3|sense REV__Charlie1a_dup2697|chr7:152115140-152115774:+|1.1168081211537504|0.1541902465722866|2.86|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 486.31640625 2 485.813462 969.612371 0.13854 6.7306E-05 0.24055 0.00011686 0.37909 0.00018417 485.81169211686586 64.782 0.69727 67.961 67.75 68.447 3.1795 124 56 4 0 0 0 0.82752 1 15480 15480 5.7604 5.7604 1 294980 + 49918 17312 31192 31206 57535 57535 0.12634951164693575 VLWLKFAF 8 Unmodified _VLWLKFAF_ 0 0 0 L1ME1_dup23464|chr13:28088883-28089738:+|4.912327732059991|0.0030483881648494|10.65|151.0|60|3|anti-sense L1ME1_dup23464|chr13:28088883-28089738:+|4.912327732059991|0.0030483881648494|10.65|151.0|60|3|anti-sense L1ME1_dup23464|chr13:28088883-28089738:+|4.912327732059991|0.0030483881648494|10.65|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_2 6 512.3034057617188 2 512.304939 1022.59532 NaN NaN NaN NaN NaN NaN NaN 73.689 1 77.267 76.767 77.767 3.5779 0 0 0 0.38547 1 17312 17312 13.508 2.684 1 49919 12318 31193 31207 57536 57536 0.08493030558895498 VLWLKFAF 8 Unmodified _VLWLKFAF_ 0 0 0 L1ME1_dup23464|chr13:28088883-28089738:+|4.912327732059991|0.0030483881648494|10.65|151.0|60|3|anti-sense L1ME1_dup23464|chr13:28088883-28089738:+|4.912327732059991|0.0030483881648494|10.65|151.0|60|3|anti-sense L1ME1_dup23464|chr13:28088883-28089738:+|4.912327732059991|0.0030483881648494|10.65|151.0|60|3|anti-sense MSMS UPN48_class_I_Rep_2 6 512.302490234375 2 512.304939 1022.59532 NaN NaN NaN NaN NaN NaN NaN 73.98 1 77.558 77.058 78.058 3.5779 0 0 0 0.39819 1 17393 17393 8.5933 1.8701 1 49920 12318 31193 31207 57537 57537 0.08493030558895498 VLWPQAKEL 9 Unmodified _VLWPQAKEL_ 0 0 0 MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|7|2|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|7|2|sense MLT1C_dup15422|chr14:92659742-92660153:-|2.1685539131991103|0.0993102104147789|4.45|151.0|7|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 542.3138427734375 2 542.313492 1082.61243 0.41553 0.00022535 0.41052 0.00022263 0.82605 0.00044798 542.3136333269168 64.334 0.57506 67.508 67.195 67.77 3.1741 74 39 3 0 0 0 0.28552 1 15381 15381 14.838 0 1 204980 49921 16300 31194 31208 57538 57538 0.07442906374035374 VLWRVAILLVS 11 Unmodified _VLWRVAILLVS_ 0 0 0 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 MULTI-SECPEP UPN47_class_I_Rep_2 3 634.3781127929688 2 634.908091 1267.80163 0.63452 0.00040286 0.2866 0.00018196 0.92112 0.00058483 634.908145072054 105.58 0.088219 109.11 109.07 109.16 3.5327 19 13 2 0 0 0 22.551 1 25609 25609 3.2813 1.7994 1 530200 + 49922 20600 31195 31209 57539 57539 0.17843978667360716 VLWRVAILLVS 11 Unmodified _VLWRVAILLVS_ 0 0 0 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2 MULTI-SECPEP UPN48_class_I_Rep_2 6 634.3779907226562 2 634.908091 1267.80163 0.49745 0.00031583 0.44193 0.00028059 0.93938 0.00059642 634.9081538584339 105.08 0.38448 108.77 108.73 109.11 3.6901 86 57 2 0 0 0 22.551 1 24901 24901 1.3295 0 1 598070 + 49923 20600 31195 31209 57540 57540 0.17843978667360716 VLWSNQKPPFP 11 Unmodified _VLWSNQKPPFP_ 0 0 0 HAL1ME_dup2416|chr4:139024904-139025528:-|1.8651724373266667|0.0312739858948315|5.9|151.0|22|1|anti-sense HAL1ME_dup2416|chr4:139024904-139025528:-|1.8651724373266667|0.0312739858948315|5.9|151.0|22|1|anti-sense HAL1ME_dup2416|chr4:139024904-139025528:-|1.8651724373266667|0.0312739858948315|5.9|151.0|22|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 438.5741271972656 3 438.239796 1311.69756 -0.39381 -0.00017258 0.24298 0.00010649 -0.15083 -6.6099E-05 438.23988987021175 65.994 0.90964 69.253 69.145 70.055 3.2588 101 60 2 0 0 0 0.59293 1 15811 15811 5.4027 0 1 320640 49924 7958 31196 31210 57541 57541 0.05417651839843529 VLWTQTHF 8 Unmodified _VLWTQTHF_ 0 0 0 REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 516.2677612304688 2 516.269084 1030.52362 0.3633 0.00018756 -0.46086 -0.00023793 -0.097557 -5.0365E-05 516.2686592978188 51.786 0.59901 55.425 55.144 55.743 3.639 143 64 3 0 0 0 0.82752 1 10765 10765 14.582 0 1 562190 + 49925 23115 31197 31211 57542 57542 0.009574911343634085 VLWTQTHF 8 Unmodified _VLWTQTHF_ 0 0 0 REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF REV__ENST00000578303.1_1_17:16470846-16472440:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 516.7710571289062 2 516.269084 1030.52362 0.21943 0.00011329 -0.39539 -0.00020413 -0.17596 -9.0841E-05 516.2687606733679 51.846 0.66599 55.444 55.183 55.849 3.5979 121 75 2 0 0 0 0.82752 1 10645 10645 24.674 0 1 576830 + 49926 23115 31197 31211 57543 57543 0.009574911343634085 VLWWCYLW 8 Unmodified _VLWWCYLW_ 0 0 0 REV__L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|301|2|anti-sense REV__L1PB1_dup1585|chr2:173110431-173115858:-|1.7641566678187082|0.0494622460180721|5.16|144.0|301|2|anti-sense MSMS UPN47_class_I_Rep_1 2 584.7882690429688 2 584.786056 1167.55756 NaN NaN NaN NaN NaN NaN NaN 36.388 1 40.058 39.558 40.558 3.6692 0 0 0 0.40738 1 6785 6785 0.79363 0.10326 1 + 49927 30356 31198 31212 57544 57544 -0.019518036982390186 VLYAVETPP 9 Unmodified _VLYAVETPP_ 0 0 0 REV__L1M4_dup14671|chr12:51160632-51161398:+|3.9006670099527367|0.0883559733445184|5.46|151.0|22|3|sense REV__L1M4_dup14671|chr12:51160632-51161398:+|3.9006670099527367|0.0883559733445184|5.46|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 494.7721252441406 2 494.771126 987.527698 0.29005 0.00014351 -0.21095 -0.00010437 0.079098 3.9136E-05 494.7710392056051 77.946 0.59685 81.568 81.242 81.838 3.6216 80 64 2 0 0 0 0.3898 1 18448 18448 8.5933 0 1 115660 + 49928 24372 31199 31213 57545 57545 0.033435358374163116 VLYDLALR 8 Unmodified _VLYDLALR_ 0 0 0 REV__Harlequin-int_dup238|chr6:111284651-111288187:-|4.150482132727121|0.2813414849289727|3.88|151.0|33|1|sense REV__Harlequin-int_dup238|chr6:111284651-111288187:-|4.150482132727121|0.2813414849289727|3.88|151.0|33|1|sense MSMS UPN47_class_I_Rep_2 3 481.3371276855469 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 113.71 1 117.22 116.72 117.72 3.5109 0 0 0 0.40746 1 27664 27664 0.69038 0 1 + 49929 23517 31200 31214 57546 57546 0.07734948311212975 VLYDRQGIGR 10 Unmodified _VLYDRQGIGR_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MSMS UPN46_class_I_Rep_3 1 588.8275756835938 2 588.827829 1175.64111 NaN NaN NaN NaN NaN NaN NaN 34.227 1 34.227 33.727 34.727 0 0 0 0 0.53105 1 6086 6086 22.736 7.898 1 49930 4352 31201 31215 57547 57547 0.06031024003186758 VLYDRQGIGR 10 Unmodified _VLYDRQGIGR_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MSMS UPN46_class_I_Rep_3 1 588.8280639648438 2 588.827829 1175.64111 NaN NaN NaN NaN NaN NaN NaN 34.362 1 34.362 33.862 34.862 0 0 0 0 0.53105 1 6127 6127 7.609 1.4032 1 49931 4352 31201 31215 57548 57548 0.06031024003186758 VLYDRVLKY 9 Unmodified _VLYDRVLKY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS UPN48_class_I_Rep_1 5 584.8403930664062 2 584.839874 1167.66519 0.39937 0.00023357 0.2494 0.00014586 0.64877 0.00037943 584.840000680919 47.539 0.63179 51.061 50.848 51.479 3.5219 78 53 2 0 0 0 0.11648 2 9392 9392;9447 30.703 18.463 1 298250 49932 4335 31202 31216 57549;57550 57549 0.08806864436837714 VLYDRVLKY 9 Unmodified _VLYDRVLKY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS UPN48_class_I_Rep_2 6 584.8411865234375 2 584.839874 1167.66519 0.38311 0.00022406 0.43035 0.00025169 0.81346 0.00047575 584.8401731174033 47.346 0.71083 51.082 50.699 51.41 3.7361 80 65 2 0 0 0 0.10225 1 9360 9360 33.445 16.332 1 288950 49933 4335 31202 31216 57551 57551 0.08806864436837714 VLYDRVLKY 9 Unmodified _VLYDRVLKY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS UPN48_class_I_Rep_3 7 584.8407592773438 2 584.839874 1167.66519 0.42119 0.00024633 0.52034 0.00030431 0.94153 0.00055064 584.8401878583601 47.392 0.68004 51.028 50.828 51.508 3.6363 93 57 2 0 0 0 0.086321 1 9334 9334 37.075 19.962 1 324610 49934 4335 31202 31216 57552 57552 0.08806864436837714 VLYETEVEV 9 Unmodified _VLYETEVEV_ 0 0 0 ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENST00000512983.5_1_4:156617950-156632415:+|nuORF ENSG00000164116|ENST00000506455|GUCY1A1 ENSG00000164116|ENST00000506455|GUCY1A1 MULTI-SECPEP UPN47_class_I_Rep_1 2 540.2903442382812 2 540.776605 1079.53866 0.43603 0.00023579 0.72973 0.00039462 1.1658 0.00063042 540.7772190079568 59.646 0.49033 63.044 62.9 63.391 3.3982 40 27 2 0 0 0 0.043767 1 13874 13874 37.974 14.826 1 112470 49935 4084 31203 31217 57553 57553 0.0020689342104560637 VLYEVPLPPP 10 Unmodified _VLYEVPLPPP_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENST00000532696.1_1_11:9225120-9228222:-|nuORF ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MULTI-SECPEP UPN47_class_I_Rep_1 2 561.787841796875 2 562.323525 1122.6325 0.36597 0.00020579 -0.45456 -0.00025561 -0.088588 -4.9815E-05 562.3234244985011 64.8 0.61391 68.155 68.092 68.706 3.3557 54 43 2 0 0 0 0.84575 1 15430 15430 6.7232 0 1 82779 49936 5034 31204 31218 57554 57554 0.07608657313994627 VLYFRWHR 8 Unmodified _VLYFRWHR_ 0 0 0 REV__L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|25|1|anti-sense REV__L1MEc_dup8255|chr7:76631570-76632169:+|1.2231493518135197|0.1304368502505957|3.23|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_1 5 588.8242797851562 2 588.824892 1175.63523 NaN NaN NaN NaN NaN NaN NaN 68.014 1 71.466 70.966 71.966 3.4517 0 0 0 0.40404 1 15677 15677 5.2307 0 1 + 49937 28483 31205 31219 57555 57555 0.05443970282180999 VLYKEFFVY 9 Unmodified _VLYKEFFVY_ 0 0 0 REV__L1MA4_dup4264|chr7:36698672-36700123:-|1.171105696675448|0.0225021438622973|5.7|151.0|102|3|anti-sense REV__L1MA4_dup4264|chr7:36698672-36700123:-|1.171105696675448|0.0225021438622973|5.7|151.0|102|3|anti-sense MSMS UPN47_class_I_Rep_2 3 604.3231201171875 2 604.323525 1206.6325 NaN NaN NaN NaN NaN NaN NaN 67.715 1 70.979 70.479 71.479 3.2636 0 0 0 0.40038 1 16345 16345 0.6015 0 1 + 49938 25176 31206 31220 57556 57556 0.037446573140186956 VLYLCKVDNH 10 Unmodified _VLYLCKVDNH_ 0 0 0 REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|22|2|sense REV__L1MEd_dup3527|chr2:239058177-239059767:+|2.7369792063136638|0.421491567576966|2.7|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 401.8776550292969 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 15.392 1 18.758 18.258 19.258 3.3659 0 0 0 0.53105 1 779 779 0.62683 0 1 + 49939 28570 31207 31221 57557 57557 0.01857743662685607 VLYMVLCLP 9 Unmodified _VLYMVLCLP_ 0 0 0 ENST00000477551.5_3_3:150289798-150289846:+|nuORF ENST00000477551.5_3_3:150289798-150289846:+|nuORF ENST00000477551.5_3_3:150289798-150289846:+|nuORF MSMS UPN48_class_I_Rep_2 6 525.7913208007812 2 525.789949 1049.56535 NaN NaN NaN NaN NaN NaN NaN 32.401 1 36.051 35.551 36.551 3.6497 0 0 0 0.39326 1 5001 5001 2.3027 0 1 49940 6976 31208 31222 57558 57558 0.042545875070345573 VLYNESLQL 9 Unmodified _VLYNESLQL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS UPN47_class_I_Rep_1 2 539.7923583984375 2 539.792589 1077.57063 0.36452 0.00019676 0.21288 0.00011491 0.5774 0.00031168 539.7927630768604 66.237 0.54194 69.594 69.313 69.855 3.3576 67 35 2 0 0 0 0.073198 3 15851 15801;15851;15875 40.239 8.9709 1 134130 49941 3712 31209 31223 57559;57560;57561 57560 0.03494305894855643 VLYNESLQL 9 Unmodified _VLYNESLQL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS UPN47_class_I_Rep_2 3 539.7924194335938 2 539.792589 1077.57063 0.32731 0.00017668 0.35837 0.00019345 0.68568 0.00037012 539.7926893747322 66.462 0.53661 69.721 69.427 69.963 3.2588 59 34 2 0 0 0 0.10225 2 15930 15930;16003 33.445 3.6043 1 178420 49942 3712 31209 31223 57562;57563 57562 0.03494305894855643 VLYNESLQL 9 Unmodified _VLYNESLQL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS UPN47_class_I_Rep_3 4 540.3087768554688 2 539.792589 1077.57063 0.41749 0.00022536 0.16527 8.9214E-05 0.58277 0.00031457 539.7927132535087 66.468 0.48612 69.653 69.396 69.882 3.1853 93 37 3 0 0 0 0.05757 3 16065 16014;16051;16065 45.74 12.295 1 180580 49943 3712 31209 31223 57564;57565;57566 57566 0.03494305894855643 VLYNFFNT 8 Unmodified _VLYNFFNT_ 0 0 0 Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|104|3|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|104|3|anti-sense Tigger17_dup72|chr13:20055213-20057095:+|2.64970624375209|0.159779116714527|4.05|151.0|104|3|anti-sense MSMS UPN48_class_I_Rep_2 6 509.2567443847656 2 509.255643 1016.49673 NaN NaN NaN NaN NaN NaN NaN 80.835 1 84.492 83.992 84.992 3.6567 0 0 0 0.40292 1 19178 19178 6.7232 0 1 49944 33244 31210 31224 57567 57567 -0.010856174768036908 VLYNSLPIL 9 Unmodified _VLYNSLPIL_ 0 0 0 Tigger15a_dup20|chr1:13753207-13753432:+|1.1098947822011564|0.0351851037127305|4.98|151.0|15|1|anti-sense Tigger15a_dup20|chr1:13753207-13753432:+|1.1098947822011564|0.0351851037127305|4.98|151.0|15|1|anti-sense Tigger15a_dup20|chr1:13753207-13753432:+|1.1098947822011564|0.0351851037127305|4.98|151.0|15|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 516.2379760742188 2 516.310418 1030.60628 0.27249 0.00014069 0.77128 0.00039822 1.0438 0.00053891 516.8124811114252 57.458 0.089279 60.989 60.909 60.999 3.5317 11 7 2 0 0 0 0.091581 1 12364 12364 22.736 3.4793 1 80086 49945 33237 31211 31225 57568 57568 0.0922038814253483 VLYPAARR 8 Unmodified _VLYPAARR_ 0 0 0 REV__ENST00000474947.1_1_7:100238307-100240397:-|nuORF REV__ENST00000474947.1_1_7:100238307-100240397:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 473.28448486328125 2 473.285069 944.555585 0.031431 1.4876E-05 -1.7397 -0.00082336 -1.7082 -0.00080848 473.2844487395223 77.668 0.18666 80.95 80.842 81.029 3.2816 32 20 3 0 0 0 0.82752 1 19352 19352 2.5775 0.27475 1 73289 + 49946 18322 31212 31226 57569 57569 0.08108903608172113 VLYPLWLS 8 Unmodified _VLYPLWLS_ 0 0 0 REV__MLT1C_dup11763|chr10:11921850-11922308:+|1.4249344530151613|0.4886847933549312|1.54|151.0|24|2|anti-sense REV__MLT1C_dup11763|chr10:11921850-11922308:+|1.4249344530151613|0.4886847933549312|1.54|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_2 3 495.795654296875 2 495.786579 989.558604 NaN NaN NaN NaN NaN NaN NaN 60.33 1 63.595 63.095 64.095 3.2654 0 0 0 0.40581 1 14109 14109 2.8892 0 1 + 49947 31630 31213 31227 57570 57570 0.0634073394232928 VLYPQAQY 8 Unmodified _VLYPQAQY_ 0 0 0 L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|24|2|sense L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|24|2|sense L1MCc_dup3041|chr17:80932356-80933802:+|1.1856334173488698|0.0593389959514796|4.32|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 491.209228515625 2 491.255643 980.496732 NaN NaN NaN NaN NaN NaN NaN 22.036 1 22.036 21.536 22.536 0 0 0 0 0.40604 1 2556 2556 2.5775 0 1 49948 11868 31214 31228 57571 57571 0.005703825231876181 VLYQGGWQLI 10 Unmodified _VLYQGGWQLI_ 0 0 0 REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|30|2|sense REV__L1MB8_dup8394|chr9:122959482-122961658:+|2.6762774563858422|0.0360216171195728|6.22|151.0|30|2|sense MSMS UPN48_class_I_Rep_2 6 588.823974609375 2 588.824224 1175.63389 NaN NaN NaN NaN NaN NaN NaN 67.856 1 71.364 70.864 71.864 3.5083 0 0 0 0.53105 1 15610 15610 6.2058 0.97511 1 + 49949 26436 31215 31229 57572 57572 0.05310291402770417 VLYQLFAF 8 Unmodified _VLYQLFAF_ 0 0 0 REV__L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|144|2|anti-sense REV__L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|144|2|anti-sense MSMS UPN47_class_I_Rep_3 4 500.76702880859375 2 500.778754 999.542954 NaN NaN NaN NaN NaN NaN NaN 55.578 1 58.756 58.256 59.256 3.1779 0 0 0 0.40625 1 12711 12711 2.3027 0 1 + 49950 25154 31216 31230 57573 57573 0.043164474252762375 VLYQMNESL 9 Unmodified _VLYQMNESL_ 0 0 0 REV__L1PREC2_dup243|chr1:113935024-113935819:-|2.72156896609232|0.0059327081950243|8.84|151.0|56|3|anti-sense REV__L1PREC2_dup243|chr1:113935024-113935819:-|2.72156896609232|0.0059327081950243|8.84|151.0|56|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.7711181640625 2 548.7708 1095.52705 0.4379 0.00024031 -0.1515 -8.3136E-05 0.2864 0.00015717 548.7706637054051 70.532 0.62947 73.744 73.438 74.067 3.2113 85 55 2 0 0 0 0.33908 1 17323 17323 11.495 0 1 119600 + 49951 29086 31217 31231 57574 57574 -0.016896268739174047 VLYTGDFRL 9 Unmodified _VLYTGDFRL_ 0 0 0 nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C MULTI-MSMS UPN47_class_I_Rep_1 2 542.2955322265625 2 542.295299 1082.57605 0.42157 0.00022862 0.37928 0.00020568 0.80086 0.0004343 542.2953005205544 62.236 0.82779 65.604 65.321 66.149 3.3681 123 53 3 0 0 0 0.057664 4 14680 14597;14639;14680;14724 45.7 18.373 1 270440 49952 3620 31218 31232 57575;57576;57577;57578 57577 0.038060294773458736 VLYTGDFRL 9 Unmodified _VLYTGDFRL_ 0 0 0 nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C MULTI-MSMS UPN47_class_I_Rep_2 3 542.2955322265625 2 542.295299 1082.57605 0.39727 0.00021544 0.34269 0.00018584 0.73996 0.00040128 542.2952413303337 62.592 0.92174 65.848 65.493 66.415 3.2558 113 59 3 0 0 0 0.028995 2 14790 14790;14831 57.722 25.416 1 246870 49953 3620 31218 31232 57579;57580 57579 0.038060294773458736 VLYTGDFRL 9 Unmodified _VLYTGDFRL_ 0 0 0 nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C nc|ENSG00000152457|Q96SD1-4|DCLRE1C MULTI-MSMS UPN47_class_I_Rep_3 4 542.294921875 2 542.295299 1082.57605 0.39142 0.00021226 0.50854 0.00027578 0.89996 0.00048804 542.2952925283893 62.607 1.0406 65.777 65.453 66.494 3.1698 110 62 3 0 0 0 0.097406 3 14818 14818;14865;14905 34.402 9.0024 1 336080 49954 3620 31218 31232 57581;57582;57583 57581 0.038060294773458736 VLYVKQPF 8 Unmodified _VLYVKQPF_ 0 0 0 L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 497.29229736328125 2 497.292028 992.569503 NaN NaN NaN NaN NaN NaN NaN 61.918 1 65.386 64.886 65.886 3.4678 0 0 0 0.38547 1 13816 13816 13.508 0 1 49955 12956 31219 31233 57584 57584 0.0729213631661878 VLYVKQPF 8 Unmodified _VLYVKQPF_ 0 0 0 L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 497.293701171875 2 497.292028 992.569503 NaN NaN NaN NaN NaN NaN NaN 61.977 1 65.445 64.945 65.945 3.4678 0 0 0 0.39624 1 13834 13834 9.3474 0 1 49956 12956 31219 31233 57585 57585 0.0729213631661878 VLYVKQPF 8 Unmodified _VLYVKQPF_ 0 0 0 L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 497.2922668457031 2 497.292028 992.569503 NaN NaN NaN NaN NaN NaN NaN 62.079 1 65.547 65.047 66.047 3.4678 0 0 0 0.40404 1 13866 13866 5.2307 0 1 49957 12956 31219 31233 57586 57586 0.0729213631661878 VLYVKQPF 8 Unmodified _VLYVKQPF_ 0 0 0 L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.2929382324219 2 497.292028 992.569503 0.33795 0.00016806 0.79847 0.00039707 1.1364 0.00056513 497.29228641400465 61.779 0.20971 65.253 65.104 65.313 3.4738 24 18 3 0 0 0 0.82752 1 13770 13770 14.582 0 1 69440 49958 12956 31219 31233 57587 57587 0.0729213631661878 VLYVKQPF 8 Unmodified _VLYVKQPF_ 0 0 0 L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense L1ME4c_dup7187|chr15:68136888-68137372:+|2.096616355534848|0.0352875547242426|5.89|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 497.2926025390625 2 497.292028 992.569503 NaN NaN NaN NaN NaN NaN NaN 61.638 1 65.148 64.648 65.648 3.5104 0 0 0 0.38221 1 13637 13637 14.582 0 1 49959 12956 31219 31233 57588 57588 0.0729213631661878 VLYYFYCY 8 Unmodified _VLYYFYCY_ 0 0 0 L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|77|2|anti-sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|77|2|anti-sense L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|77|2|anti-sense MSMS UPN47_class_I_Rep_1 2 567.2556762695312 2 567.254254 1132.49396 NaN NaN NaN NaN NaN NaN NaN 69.003 1 72.371 71.871 72.871 3.3678 0 0 0 0.40738 1 16694 16694 0.79363 0 1 49960 10159 31220 31234 57589 57589 -0.06699208925988387 VLYYSLFGF 9 Unmodified _VLYYSLFGF_ 0 0 0 L1MB2_dup1689|chr3:182928111-182929233:+|1.067319296839374|0.0528323555573012|4.34|151.0|86|3|anti-sense L1MB2_dup1689|chr3:182928111-182929233:+|1.067319296839374|0.0528323555573012|4.34|151.0|86|3|anti-sense L1MB2_dup1689|chr3:182928111-182929233:+|1.067319296839374|0.0528323555573012|4.34|151.0|86|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.787841796875 2 554.789318 1107.56408 NaN NaN NaN NaN NaN NaN NaN 62.996 1 66.505 66.005 67.005 3.5091 0 0 0 0.39326 1 14048 14048 2.3027 0 1 49961 10218 31221 31235 57590 57590 0.014604127341499407 VMAIRTPIV 9 Unmodified _VMAIRTPIV_ 0 0 0 REV__L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|35|3|sense REV__L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 500.30462646484375 2 500.304613 998.594672 0.23435 0.00011725 0.322 0.0001611 0.55635 0.00027835 500.3046630690212 54.55 0.97907 58.064 57.686 58.665 3.5143 154 65 3 0 0 0 0.17897 3 11652 11494;11610;11652 22.736 5.6234 1 1108400 + 49962 25834 31222 31236 57591;57592;57593 57593 0.09531867847533704 VMAIRTPIV 9 Unmodified _VMAIRTPIV_ 0 0 0 REV__L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|35|3|sense REV__L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 500.30474853515625 2 500.304613 998.594672 0.39421 0.00019723 0.23686 0.0001185 0.63107 0.00031573 500.3045974500779 54.515 1.0119 58.097 57.654 58.666 3.5817 140 61 3 0 0 0 0.17897 2 11574 11448;11574 22.736 2.3217 1 820590 + 49963 25834 31222 31236 57594;57595 57595 0.09531867847533704 VMAIRTPIV 9 Unmodified _VMAIRTPIV_ 0 0 0 REV__L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|35|3|sense REV__L1MB3_dup15196|chr18:2708932-2710523:-|2.8867486618441087|0.1514782455715143|4.25|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 500.3050537109375 2 500.304613 998.594672 0.12016 6.0115E-05 0.34336 0.00017178 0.46352 0.0002319 500.30468558766825 54.497 0.98816 58.066 57.643 58.631 3.5694 153 64 3 0 0 0 0.17897 5 11450 11365;11409;11450;11490;11532 22.736 5.6234 1 901620 + 49964 25834 31222 31236 57596;57597;57598;57599;57600 57598 0.09531867847533704 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(56)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 515.3098754882812 2 515.309895 1028.60524 0.21707 0.00011186 0.20991 0.00010817 0.42698 0.00022003 515.3099264882529 54.602 2.0952 58.103 57.531 59.626 3.5014 273 121 3 0 0 0 0.033731 3 12226 12226;12266;12309 55.503 26.421 1 982160 49965 5570 31223 31237 57601;57602;57603 57601 167 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(53)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 515.3099975585938 2 515.309895 1028.60524 0.16597 8.5523E-05 0.22395 0.0001154 0.38992 0.00020093 515.3099292446728 54.953 1.9091 58.263 57.501 59.41 3.3102 220 106 3 0 0 0 0.038999 2 12431 12383;12431 53.404 18.472 1 1288800 49966 5570 31223 31237 57604;57605 57605 167 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(42)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 515.3099365234375 2 515.309895 1028.60524 0.30886 0.00015916 0.077465 3.9919E-05 0.38632 0.00019908 515.3098287742034 53.887 1.1843 57.073 56.496 57.68 3.1856 186 75 3 0 0 0 0.066364 2 12132 12132;12170 41.956 16.965 1 990110 49967 5570 31223 31237 57606;57607 57606 167 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(50)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 515.31005859375 2 515.309895 1028.60524 0.27159 0.00013995 0.162 8.3478E-05 0.43358 0.00022343 515.3099126608647 54.9 2.2058 58.085 57.506 59.712 3.1849 277 136 4 0 0 0 0.048662 1 12588 12588 49.554 18.286 1 1135700 49968 5570 31223 31237 57608 57608 167 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(42)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 515.3101806640625 2 515.309895 1028.60524 0.27616 0.00014231 0.12168 6.2704E-05 0.39784 0.00020501 515.3099002696874 53.703 1.3381 57.217 56.606 57.944 3.5143 248 94 4 0 0 0 0.066364 3 11233 11233;11272;11313 41.956 19.219 1 1285400 49969 5570 31223 31237 57609;57610;57611 57609 167 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(50)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 515.3099975585938 2 515.309895 1028.60524 0.41514 0.00021393 -0.01994 -1.0275E-05 0.3952 0.00020365 515.3098083012981 53.6 1.4437 57.21 56.641 58.084 3.6098 251 97 4 0 0 0 0.048662 1 11228 11228 49.554 18.286 1 1398100 49970 5570 31223 31237 57612 57612 167 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(53)APRTLLL 0 0 1 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 515.3099975585938 2 515.309895 1028.60524 0.1904 9.8113E-05 0.24576 0.00012664 0.43615 0.00022475 515.3099340958718 53.621 1.0895 57.204 56.675 57.764 3.5836 208 79 3 0 0 0 0.038999 2 11177 11177;11251 53.404 18.472 1 1923300 49971 5570 31223 31237 57613;57614 57613 167 0.0920785050197992 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 507.3121643066406 2 507.312438 1012.61032 0.22028 0.00011175 -0.2234 -0.00011333 -0.0031189 -1.5823E-06 507.31224880869246 57.766 0.17075 61.203 61.118 61.289 3.437 15 10 2 0 0 0 0.37599 1 13309 13309 9.3831 2.66 1 81380 49972 5570 31223 31238 57615 57615 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 507.3126220703125 2 507.312438 1012.61032 0.22284 0.00011305 -0.4204 -0.00021328 -0.19756 -0.00010023 507.31228122362904 59.466 0.45625 62.74 62.509 62.965 3.2731 48 31 2 0 0 0 0.32682 1 13857 13857 12.241 4.9514 1 73039 49973 5570 31223 31238 57616 57616 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MSMS UPN47_class_I_Rep_2 3 507.3126525878906 2 507.312438 1012.61032 NaN NaN NaN NaN NaN NaN NaN 58.126 1 61.418 60.918 61.918 3.2912 0 0 0 0.18866 1 13432 13432 17.113 5.4726 1 49974 5570 31223 31238 57617 57617 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 507.3117980957031 2 507.312438 1012.61032 0.15244 7.7336E-05 -0.071537 -3.6292E-05 0.080905 4.1044E-05 507.3122905360021 58.311 0.38925 61.477 61.248 61.637 3.1658 41 23 2 0 0 0 0.32682 1 13545 13545 12.241 0.60036 1 106700 49975 5570 31223 31238 57618 57618 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 507.3125305175781 2 507.312438 1012.61032 0.33615 0.00017053 -0.59647 -0.0003026 -0.26033 -0.00013207 507.3121493825535 58.165 0.69887 61.652 61.347 62.046 3.487 73 40 3 0 0 0 0.17897 3 12636 12636;12682;12741 22.736 5.794 1 212370 49976 5570 31223 31238 57619;57620;57621 57619 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 507.3125305175781 2 507.312438 1012.61032 0.40466 0.00020529 -0.24365 -0.00012361 0.16101 8.1681E-05 507.3121676045704 58.226 0.70216 61.725 61.403 62.105 3.4987 69 41 2 0 0 0 0.17897 3 12625 12625;12667;12711 22.736 5.794 1 243070 49977 5570 31223 31238 57622;57623;57624 57622 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 507.3125 2 507.312438 1012.61032 0.21178 0.00010744 -0.34004 -0.0001725 -0.12826 -6.5066E-05 507.31220497578965 58.102 0.68425 61.634 61.282 61.967 3.5317 75 45 2 0 0 0 0.24936 1 12550 12550 17.113 5.4726 1 168670 49978 5570 31223 31238 57625 57625 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 507.312438 1012.61032 0.2432 0.00012338 -0.41052 -0.00020826 -0.16733 -8.4887E-05 507.31232880551556 59.247 0.43314 62.664 62.405 62.838 3.4171 -0.11447 -7.5402E-06 NaN 12.241 47 32 2 NaN NaN NaN NaN 0 NaN NaN 0 50899 49979 5570 31223 31238 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENST00000463348.5_1_6:30227401-30227711:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 507.312438 1012.61032 0.17048 8.6489E-05 -0.34625 -0.00017566 -0.17576 -8.9167E-05 507.31226770781797 59.767 0.16601 62.932 62.865 63.031 3.1651 0.15328 5.7675E-05 NaN 12.241 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 34529 49980 5570 31223 31238 0.10452154364600119 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(42)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_1 2 508.3019714355469 2 508.30207 1014.58959 0.040091 2.0378E-05 -0.082089 -4.1726E-05 -0.041998 -2.1348E-05 508.3019298611868 48.52 1.1624 52.202 51.739 52.901 3.6819 183 74 3 0 0 0 0.066364 1 10500 10500 41.956 19.219 1 789980 49981 5687 31224 31239 57626 57626 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(46)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_1 2 508.302001953125 2 508.30207 1014.58959 0.079857 4.0591E-05 0.043929 2.2329E-05 0.12379 6.2921E-05 508.30203469113934 49.897 1.9046 53.526 52.83 54.734 3.6285 250 105 3 0 0 0 0.05757 1 10895 10895 45.74 20.749 1 1186700 49982 5687 31224 31239 57627 57627 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(42)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_2 3 508.302001953125 2 508.30207 1014.58959 0.16444 8.3588E-05 -0.070131 -3.5648E-05 0.094313 4.794E-05 508.3020182279729 50.194 2.3721 53.537 52.772 55.144 3.3431 281 128 3 0 0 0 0.066364 1 11022 11022 41.956 17.935 1 937110 49983 5687 31224 31239 57628 57628 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(42)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_3 4 508.302001953125 2 508.30207 1014.58959 0.24944 0.00012679 -0.27416 -0.00013936 -0.024719 -1.2565E-05 508.30183850803985 49.075 1.3012 52.309 51.726 53.027 3.2345 184 74 3 0 0 0 0.066364 1 10727 10727 41.956 19.219 1 952510 49984 5687 31224 31239 57629 57629 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(59)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_1 5 508.3020935058594 2 508.30207 1014.58959 0.22387 0.00011379 -0.17116 -8.7003E-05 0.052701 2.6788E-05 508.30198096933447 50.066 1.5464 53.591 53.164 54.711 3.5246 312 99 4 0 0 0 0.026395 4 10186 10186;10227;10265;10302 59.368 19.472 1 7974100 49985 5687 31224 31239 57630;57631;57632;57633 57630 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(42)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_1 5 508.3021240234375 2 508.30207 1014.58959 0.2375 0.00012072 -0.1429 -7.2634E-05 0.094605 4.8088E-05 508.3019018497276 52.068 2.6435 55.591 54.357 57 3.5227 427 217 3 0 0 0 0.066364 2 10741 10741;10819 41.956 15.687 1 1547700 49986 5687 31224 31239 57634;57635 57634 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(50)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_2 6 508.3018493652344 2 508.30207 1014.58959 0.3343 0.00016992 -0.24646 -0.00012528 0.087839 4.4649E-05 508.3018492689301 51.928 2.1925 55.567 54.518 56.71 3.639 442 182 3 0 0 0 0.048662 1 10807 10807 49.554 16.769 1 1657700 49987 5687 31224 31239 57636 57636 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(59)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_3 7 508.30206298828125 2 508.30207 1014.58959 0.168 8.5394E-05 -0.17593 -8.9424E-05 -0.0079273 -4.0295E-06 508.3020101695873 50.061 1.3016 53.682 53.239 54.541 3.621 272 80 5 0 0 0 0.026395 5 10116 10075;10116;10155;10192;10234 59.368 22.717 1 6545900 49988 5687 31224 31239 57637;57638;57639;57640;57641 57638 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(42)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_3 7 508.3020324707031 2 508.30207 1014.58959 0.14397 7.3178E-05 -0.21446 -0.00010901 -0.070492 -3.5831E-05 508.30191926494575 51.994 1.5868 55.591 55.241 56.828 3.5979 264 141 3 0 0 0 0.066364 2 10746 10746;10779 41.956 15.687 1 1911100 49989 5687 31224 31239 57642;57643 57642 171 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MATCH UPN47_class_I_Rep_1 2 2 508.30207 1014.58959 0.1365 6.9384E-05 -0.58928 -0.00029953 -0.45278 -0.00023015 508.30187947587086 52.227 0.17079 55.786 55.652 55.823 3.5585 0.18264 -0.00039892 NaN 49.554 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 88052 49990 5687 31224 31239 171 0.08287563984924873 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_1 2 500.3052062988281 2 500.304613 998.594672 0.10586 5.2961E-05 0.070226 3.5134E-05 0.17608 8.8095E-05 500.3045859422578 52.966 0.60598 56.525 56.262 56.868 3.5585 49 36 2 0 0 0 0.24936 3 11784 11784;11834;11877 17.113 4.5813 1 105620 49991 5687 31224 31240 57644;57645;57646 57644 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_2 3 500.30487060546875 2 500.304613 998.594672 0.29163 0.0001459 -0.31934 -0.00015977 -0.027711 -1.3864E-05 500.3045299343077 53.388 0.56729 56.714 56.359 56.926 3.3266 50 35 2 0 0 0 0.17897 3 11960 11918;11960;12002 22.736 8.8302 1 92163 49992 5687 31224 31240 57647;57648;57649 57648 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN47_class_I_Rep_3 4 500.3048095703125 2 500.304613 998.594672 0.26987 0.00013502 -0.019778 -9.895E-06 0.25009 0.00012512 500.3045150921664 53.498 0.65478 56.693 56.406 57.061 3.1948 52 38 2 0 0 0 0.24936 5 12053 12006;12011;12053;12095;12157 17.113 4.5813 1 113130 49993 5687 31224 31240 57650;57651;57652;57653;57654 57652 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_1 5 500.3048095703125 2 500.304613 998.594672 0.23435 0.00011725 0.322 0.0001611 0.55635 0.00027835 500.3046630690212 54.55 0.97907 58.064 57.686 58.665 3.5143 154 65 3 0 0 0 0.13244 4 11572 11449;11531;11572;11714 27.629 2.28 1 1108400 49994 5687 31224 31240 57655;57656;57657;57658 57657 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_2 6 500.3047790527344 2 500.304613 998.594672 0.39421 0.00019723 0.23686 0.0001185 0.63107 0.00031573 500.3045974500779 54.515 1.0119 58.097 57.654 58.666 3.5817 140 61 3 0 0 0 0.066364 5 11535 11411;11488;11535;11614;11658 41.956 9.1699 1 820590 49995 5687 31224 31240 57659;57660;57661;57662;57663 57661 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS UPN48_class_I_Rep_3 7 500.304443359375 2 500.304613 998.594672 0.12016 6.0115E-05 0.34336 0.00017178 0.46352 0.0002319 500.30468558766825 54.497 0.98816 58.066 57.643 58.631 3.5694 153 64 3 0 0 0 0.30034 1 11576 11576 13.906 0 1 901620 49996 5687 31224 31240 57664 57664 0.09531867847545072 VMDSKIVQV 9 Oxidation (M) _VM(Oxidation (M))DSKIVQV_ VM(1)DSKIVQV VM(69)DSKIVQV 0 0 1 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS UPN46_class_I_Rep_3 1 518.3087768554688 2 517.781167 1033.54778 0.27587 0.00014284 0.16527 8.5575E-05 0.44115 0.00022842 517.7812178666585 39.499 0.77565 39.499 39.196 39.971 0 143 76 2 0 0 0 0.01093 1 7578 7578 69.338 29.099 1 632340 49997 2065 31225 31241 57665 57665 69 0.03234963505747146 VMDSKIVQV 9 Oxidation (M) _VM(Oxidation (M))DSKIVQV_ 0 0 1 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 517.781167 1033.54778 -0.23648 -0.00012245 -2.4676 -0.0012777 -2.704 -0.0014001 517.7800932185432 36.484 0.065166 39.739 39.72 39.785 3.2547 0.11969 -0.0026952 NaN 69.338 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 22251 49998 2065 31225 31241 69 0.03234963505747146 VMEKHVHI 8 Unmodified _VMEKHVHI_ 0 0 0 REV__THE1D-int_dup1999|chr13:32373536-32374878:-|1.8616751051864333|0.0841541111726374|4.47|151.0|6|1|sense REV__THE1D-int_dup1999|chr13:32373536-32374878:-|1.8616751051864333|0.0841541111726374|4.47|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 496.7711486816406 2 496.770937 991.527321 NaN NaN NaN NaN NaN NaN NaN 39.687 1 43.343 42.843 43.843 3.6557 0 0 0 0.40738 1 6971 6971 0.79363 0 1 + 49999 32308 31226 31242 57666 57666 0.031218376365927725 VMEKSFLEY 9 Oxidation (M) _VM(Oxidation (M))EKSFLEY_ VM(1)EKSFLEY VM(54)EKSFLEY 0 0 1 ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z ENST00000513342.5_1_17:46990150-47004493:+|nuORF ENST00000513342.5_1_17:46990150-47004493:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 581.27880859375 2 581.278457 1160.54236 0.34254 0.00019911 0.48333 0.00028095 0.82588 0.00048006 581.2786845228147 47.968 0.79115 51.317 51.048 51.839 3.3492 119 57 3 0 0 0 0.037922 2 10354 10316;10354 53.833 15.859 1 366530 50000 3828 31227 31243 57667;57668 57668 122 -0.031487600767377444 VMEKSFLEY 9 Oxidation (M) _VM(Oxidation (M))EKSFLEY_ VM(1)EKSFLEY VM(42)EKSFLEY 0 0 1 ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z ENST00000513342.5_1_17:46990150-47004493:+|nuORF ENST00000513342.5_1_17:46990150-47004493:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 581.27880859375 2 581.278457 1160.54236 0.38523 0.00022392 0.21773 0.00012656 0.60296 0.00035049 581.2784641600604 48.125 1.0123 51.365 51.038 52.051 3.2405 135 63 3 0 0 0 0.066364 1 10399 10399 41.956 15.072 1 351840 50001 3828 31227 31243 57669 57669 122 -0.031487600767377444 VMEKSFLEY 9 Unmodified _VMEKSFLEY_ 0 0 0 ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z ENST00000513342.5_1_17:46990150-47004493:+|nuORF ENST00000513342.5_1_17:46990150-47004493:+|nuORF MSMS UPN47_class_I_Rep_2 3 573.2808227539062 2 573.281 1144.54745 NaN NaN NaN NaN NaN NaN NaN 52.977 1 56.303 55.803 56.803 3.3266 0 0 0 0.39036 1 11858 11858 2.9952 0 1 50002 3828 31227 31244 57670 57670 -0.01904456214106176 VMEQAVDEPV 10 Unmodified _VMEQAVDEPV_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 REV__nc|ENSG00000060237|Q9H4A3-4|WNK1 MSMS UPN48_class_I_Rep_2 6 558.7647705078125 2 558.765714 1115.51688 NaN NaN NaN NaN NaN NaN NaN 32.386 1 36.036 35.536 36.536 3.6497 0 0 0 0.53105 1 4997 4997 1.4819 0 1 + 50003 17720 31228 31245 57671 57671 -0.036262345991644906 VMFFDESR 8 Unmodified _VMFFDESR_ 0 0 0 REV__MER21A_dup460|chr4:48287719-48288688:+|1.1686019011251478|0.0573425348846376|4.35|151.0|61|3|anti-sense REV__MER21A_dup460|chr4:48287719-48288688:+|1.1686019011251478|0.0573425348846376|4.35|151.0|61|3|anti-sense MSMS UPN48_class_I_Rep_2 6 515.5470581054688 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 30.038 1 33.673 33.173 34.173 3.6351 0 0 0 0.40738 1 4341 4341 0.79363 0 1 + 50004 31187 31229 31246 57672 57672 -0.05458451733943548 VMHLREVL 8 Unmodified _VMHLREVL_ 0 0 0 REV__ENSG00000153147|ENST00000283131|SMARCA5 REV__ENSG00000153147|ENST00000283131|SMARCA5 MSMS UPN47_class_I_Rep_1 2 498.7854919433594 2 498.786587 995.558621 NaN NaN NaN NaN NaN NaN NaN 68.637 1 72.001 71.501 72.501 3.3646 0 0 0 0.40738 1 16583 16583 0.79363 0 1 + 50005 19704 31230 31247 57673 57673 0.06066410670666755 VMHPCMFS 8 Unmodified _VMHPCMFS_ 0 0 0 REV__MLT1A0_dup4212|chr3:128765470-128765757:-|1.2882509266509006|0.0114411824949877|6.82|151.0|15|1|anti-sense REV__MLT1A0_dup4212|chr3:128765470-128765757:-|1.2882509266509006|0.0114411824949877|6.82|151.0|15|1|anti-sense MSMS UPN46_class_I_Rep_3 1 476.30633544921875 2 476.197902 950.38125 NaN NaN NaN NaN NaN NaN NaN 113.32 1 113.32 112.82 113.82 0 0 0 0 0.40738 1 27987 27987 0.79363 0 1 + 50006 31598 31231 31248 57674 57674 -0.09592504195313722 VMIFKSLY 8 Unmodified _VMIFKSLY_ 0 0 0 L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|101|1|anti-sense L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|101|1|anti-sense L1MC5_dup5340|chr6:38339486-38341500:+|1.4215331712480903|0.0185236248318035|6.26|151.0|101|1|anti-sense MSMS UPN48_class_I_Rep_3 7 500.7658996582031 2 500.780439 999.546325 NaN NaN NaN NaN NaN NaN NaN 34.251 1 37.931 37.431 38.431 3.6797 0 0 0 0.40738 1 5421 5421 0.79363 0 1 50007 11687 31232 31249 57675 57675 0.04653374207634897 VMILKLPFLKR 11 Unmodified _VMILKLPFLKR_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MSMS UPN47_class_I_Rep_2 3 453.305419921875 3 453.296588 1356.86793 NaN NaN NaN NaN NaN NaN NaN 117.56 1 121.05 120.55 121.55 3.4891 0 0 0 0.38417 1 28736 28736 0.094841 0 1 50008 1229 31233 31250 57676 57676 0.2037747123772533 VMIYHMEK 8 Unmodified _VMIYHMEK_ 0 0 0 REV__L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|15|1|sense REV__L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|15|1|sense MSMS UPN47_class_I_Rep_3 4 525.759521484375 2 525.759181 1049.50381 NaN NaN NaN NaN NaN NaN NaN 22.951 1 26.302 25.802 26.802 3.3503 0 0 0 0.40738 1 2834 2834 0.79363 0 1 + 50009 28878 31234 31251 57677 57677 -0.018963441922551283 VMKETYEV 8 Unmodified _VMKETYEV_ 0 0 0 REV__ENSG00000126749.16,EMG1,chr12,+,I1.1,6971092,6974338|25|19.2|3|intron REV__ENSG00000126749.16,EMG1,chr12,+,I1.1,6971092,6974338|25|19.2|3|intron MULTI-MSMS UPN47_class_I_Rep_1 2 500.2467041015625 2 499.746793 997.479033 0.17098 8.5446E-05 -1.0221 -0.0005108 -0.85114 -0.00042535 499.74673452328966 63.631 0.73386 66.987 66.74 67.474 3.3557 103 60 2 0 0 0 0.82752 2 15015 15015;15101 3.9444 0 1 101290 + 50010 18864 31235 31252 57678;57679 57678 -0.0198070079397894 VMKIFHKP 8 Unmodified _VMKIFHKP_ 0 0 0 REV__L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|109|1|anti-sense REV__L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|109|1|anti-sense MSMS UPN47_class_I_Rep_2 3 500.3045959472656 2 500.294048 998.573543 NaN NaN NaN NaN NaN NaN NaN 54.49 1 57.808 57.308 58.308 3.3187 0 0 0 0.40364 1 12323 12323 5.7604 0 1 + 50011 29128 31236 31253 57680 57680 0.07419902538674705 VMKLKLKKI 9 Unmodified _VMKLKLKKI_ 0 0 0 REV__HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|59|2|sense REV__HERVK22-int_dup102|chr5:37090135-37093765:+|1.7865740937156267|0.0962392090037844|4.21|150.0|59|2|sense MSMS UPN46_class_I_Rep_3 1 551.2479858398438 2 550.88303 1099.75151 NaN NaN NaN NaN NaN NaN NaN 96.583 1 96.583 96.083 97.083 0 0 0 0 0.4029 1 23488 23488 0 0 1 + 50012 23804 31237 31254 57681 57681 0.20562152737875294 VMKLLNKG 8 Unmodified _VMKLLNKG_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|68|2|sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|68|2|sense MSMS UPN48_class_I_Rep_3 7 451.7796630859375 2 451.778231 901.541908 NaN NaN NaN NaN NaN NaN NaN 77.507 1 81.109 80.609 81.609 3.6016 0 0 0 0.40625 1 18311 18311 2.3027 1.5091 1 + 50013 31404 31238 31255 57682 57682 0.08719909784724678 VMKWVSLL 8 Unmodified _VMKWVSLL_ 0 0 0 L1MA3_dup415|chr1:184922906-184925053:-|3.6323726384124218|0.0350331037233193|6.7|151.0|116|2|anti-sense L1MA3_dup415|chr1:184922906-184925053:-|3.6323726384124218|0.0350331037233193|6.7|151.0|116|2|anti-sense L1MA3_dup415|chr1:184922906-184925053:-|3.6323726384124218|0.0350331037233193|6.7|151.0|116|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.29022216796875 2 488.288431 974.562309 NaN NaN NaN NaN NaN NaN NaN 110.04 1 110.04 109.54 110.54 0 0 0 0 0.4044 1 27080 27080 4.756 0 1 50014 9544 31239 31256 57683 57683 0.07401080444537911 VMLFTFKI 8 Unmodified _VMLFTFKI_ 0 0 0 REV__L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|22|2|sense REV__L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|22|2|sense MSMS UPN47_class_I_Rep_3 4 499.7909240722656 2 499.790807 997.56706 NaN NaN NaN NaN NaN NaN NaN 24.371 1 27.722 27.222 28.222 3.3509 0 0 0 0.40472 1 3259 3259 4.3292 0 1 + 50015 24466 31240 31257 57684 57684 0.06817964587310144 VMLHTMND 8 Unmodified _VMLHTMND_ 0 0 0 REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L MSMS UPN48_class_I_Rep_2 6 480.7168884277344 2 480.717513 959.420473 NaN NaN NaN NaN NaN NaN NaN 118.76 1 122.42 121.92 122.92 3.6652 0 0 0 0.40738 1 28482 28482 0.79363 0 1 + 50016 18337 31241 31258 57685 57685 -0.06086080640113778 VMLKPNLK 8 Unmodified _VMLKPNLK_ 0 0 0 REV__HAL1_dup18270|chr14:49818391-49819041:+|2.608316607068371|0.227904359841531|3.52|151.0|10|2|sense REV__HAL1_dup18270|chr14:49818391-49819041:+|2.608316607068371|0.227904359841531|3.52|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 471.7718200683594 2 471.793881 941.573209 NaN NaN NaN NaN NaN NaN NaN 119.19 1 122.81 122.31 123.31 3.6189 0 0 0 0.40746 1 29084 29084 0.69038 0 1 + 50017 23381 31242 31259 57686 57686 0.1000848281881872 VMLLHTEK 8 Unmodified _VMLLHTEK_ 0 0 0 REV__ENST00000361871.7_2_16:1988869-1989076:-|nuORF REV__ENST00000361871.7_2_16:1988869-1989076:-|nuORF MSMS UPN48_class_I_Rep_1 5 485.74591064453125 2 485.773145 969.531738 NaN NaN NaN NaN NaN NaN NaN 24.259 1 27.824 27.324 28.324 3.5655 0 0 0 0.40738 1 2652 2652 0.79363 0 1 + 50018 21912 31243 31260 57687 57687 0.045753020594929694 VMLLQSSVT 9 Unmodified _VMLLQSSVT_ 0 0 0 REV__ENST00000256474.2_1_3:10191645-10191768:+|nuORF REV__ENST00000256474.2_1_3:10191645-10191768:+|nuORF MSMS UPN47_class_I_Rep_2 3 489.2685546875 2 489.270435 976.526318 NaN NaN NaN NaN NaN NaN NaN 76.028 1 79.35 78.85 79.85 3.3216 0 0 0 0.36505 1 18802 18802 7.2892 0 1 + 50019 21537 31244 31261 57688 57688 0.03711578477009425 VMLLVRFS 8 Unmodified _VMLLVRFS_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MSMS UPN48_class_I_Rep_1 5 482.7862243652344 2 482.786056 963.557558 NaN NaN NaN NaN NaN NaN NaN 35.733 1 39.243 38.743 39.743 3.5101 0 0 0 0.40581 1 5884 5884 2.8892 0.58649 1 50020 3808 31245 31262 57689 57689 0.07432196301772365 VMLLWVLG 8 Unmodified _VMLLWVLG_ 0 0 0 REV__ENSG00000120436|ENST00000366834|GPR31 REV__ENSG00000120436|ENST00000366834|GPR31 MSMS UPN48_class_I_Rep_2 6 465.77734375 2 465.777699 929.540846 NaN NaN NaN NaN NaN NaN NaN 72.101 1 75.652 75.152 76.152 3.5505 0 0 0 0.40738 1 16857 16857 0.79363 0 1 + 50021 18703 31246 31263 57690 57690 0.07325695415818245 VMLTRPIGL 9 Unmodified _VMLTRPIGL_ 0 0 0 REV__L1MA1_dup1275|chr5:76899235-76902745:-|16.1292807536495|0.021447217441539|9.55|150.0|176|2|anti-sense REV__L1MA1_dup1275|chr5:76899235-76902745:-|16.1292807536495|0.021447217441539|9.55|150.0|176|2|anti-sense MSMS UPN47_class_I_Rep_2 3 500.3045349121094 2 500.304613 998.594672 NaN NaN NaN NaN NaN NaN NaN 53.673 1 56.999 56.499 57.499 3.3266 0 0 0 0.38478 1 12072 12072 4.3292 0 1 + 50022 24751 31247 31264 57691 57691 0.09531867847522335 VMLVYIIRS 9 Unmodified _VMLVYIIRS_ 0 0 0 ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|65|3|anti-sense ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|65|3|anti-sense ERVL-E-int_dup6217|chr12:11152956-11153917:+|1.5552313660525652|0.0277838423896987|5.81|151.0|65|3|anti-sense MSMS UPN48_class_I_Rep_2 6 547.3258056640625 2 547.325545 1092.63654 NaN NaN NaN NaN NaN NaN NaN 35.582 1 39.27 38.77 39.77 3.6877 0 0 0 0.39326 1 5883 5883 2.3027 0 1 50023 7759 31248 31265 57692 57692 0.09392423536064598 VMMFICLLM 9 Unmodified _VMMFICLLM_ 0 0 0 REV__L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|178|2|anti-sense REV__L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|178|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.7719116210938 2 550.772388 1099.53022 0.50543 0.00027838 -0.88507 -0.00048747 -0.37964 -0.0002091 550.7716871364183 57.005 0.085358 60.305 60.253 60.339 3.3009 9 6 2 0 0 0 0.48414 1 13100 13100 2.3027 0 1 71368 + 50024 25431 31249 31266 57693 57693 -0.015561146168010964 VMMLFRMVC 9 Unmodified _VMMLFRMVC_ 0 0 0 MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|37|3|anti-sense MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|37|3|anti-sense MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|37|3|anti-sense MSMS UPN47_class_I_Rep_1 2 565.2730712890625 2 565.273086 1128.53162 NaN NaN NaN NaN NaN NaN NaN 36.903 1 40.572 40.072 41.072 3.6692 0 0 0 0.39326 1 6942 6942 2.3027 0.24298 1 50025 15981 31250 31267 57694 57694 -0.027504805280159417 VMMLLLIL 8 Unmodified _VMMLLLIL_ 0 0 0 L1PA5_dup8325|chr11:72977222-72977596:+|1.0041819996192476|0.0138845156944112|6.18|150.0|18|2|anti-sense L1PA5_dup8325|chr11:72977222-72977596:+|1.0041819996192476|0.0138845156944112|6.18|150.0|18|2|anti-sense L1PA5_dup8325|chr11:72977222-72977596:+|1.0041819996192476|0.0138845156944112|6.18|150.0|18|2|anti-sense MSMS UPN46_class_I_Rep_3 1 473.76190185546875 2 473.29741 944.580268 NaN NaN NaN NaN NaN NaN NaN 52.027 1 52.027 51.527 52.527 0 0 0 0 0.40738 1 11097 11097 0.79363 0 1 50026 14513 31251 31268 57695 57695 0.10576079375039171 VMPELDVF 8 Unmodified _VMPELDVF_ 0 0 0 REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF MSMS UPN46_class_I_Rep_3 1 475.2402038574219 2 475.238604 948.462655 NaN NaN NaN NaN NaN NaN NaN 36.335 1 36.335 35.835 36.835 0 0 0 0 0.38221 1 6724 6724 14.582 0 1 + 50027 22847 31252 31269 57696 57696 -0.013637819600603507 VMPLALLLLL 10 Unmodified _VMPLALLLLL_ 0 0 0 L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|89|2|anti-sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|89|2|anti-sense L1MA4_dup4066|chr6:142209719-142211320:+|1.5699956107078594|0.1074698752669775|3.87|151.0|89|2|anti-sense MSMS UPN46_class_I_Rep_3 1 548.365234375 2 548.364139 1094.71372 NaN NaN NaN NaN NaN NaN NaN 73.839 1 73.839 73.339 74.339 0 0 0 0 0.53105 1 17126 17126 0 0 1 50028 9689 31253 31270 57697 57697 0.17015641752414012 VMPLTKLH 8 Unmodified _VMPLTKLH_ 0 0 0 REV__ENSG00000138075|ENST00000405322|ABCG5 REV__ENSG00000138075|ENST00000405322|ABCG5 MULTI-MSMS UPN48_class_I_Rep_2 6 469.7785339355469 2 469.778231 937.541908 0.20288 9.5307E-05 0.71816 0.00033737 0.92103 0.00043268 469.77847923704377 83.818 0.46056 87.499 87.216 87.676 3.6814 61 46 2 0 0 0 0.82752 1 19909 19909 0.79363 0 1 197290 + 50029 19262 31254 31271 57698 57698 0.07063909784733369 VMPPSLFF 8 Unmodified _VMPPSLFF_ 0 0 0 L1MA4A_dup3952|chrX:155586243-155589165:+|1.1242072856726404|0.0482493123580715|4.54|151.0|109|1|anti-sense;L1PA7_dup10753|chr13:21407292-21411317:-|10.35312037649281|0.148000334455932|6.13|151.0|124|1|anti-sense;L1PA3_dup3578|chr5:93851456-93855784:-|2.0391257479456604|0.0577120907032156|5.14|151.0|139|1|anti-sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|274|2|anti-sense L1MA4A_dup3952|chrX:155586243-155589165:+|1.1242072856726404|0.0482493123580715|4.54|151.0|109|1|anti-sense L1MA4A_dup3952|chrX:155586243-155589165:+|1.1242072856726404|0.0482493123580715|4.54|151.0|109|1|anti-sense MSMS UPN48_class_I_Rep_1 5 469.2472229003906 2 469.246232 936.477911 NaN NaN NaN NaN NaN NaN NaN 83.84 1 87.437 86.937 87.937 3.5973 0 0 0 0.4032 1 20059 20059 6.3541 0 1 50030 9802 31255 31272 57699 57699 0.0071312962777483335 VMQQKMKY 8 Unmodified _VMQQKMKY_ 0 0 0 REV__Tigger1_dup2542|chr3:128156451-128158810:+|1.2303001551754518|0.1103989855309844|3.48|151.0|10|1|sense REV__Tigger1_dup2542|chr3:128156451-128158810:+|1.2303001551754518|0.1103989855309844|3.48|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 528.2730102539062 2 528.272455 1054.53036 NaN NaN NaN NaN NaN NaN NaN 34.787 1 34.787 34.287 35.287 0 0 0 0 0.39819 1 6254 6254 8.5933 0.68312 1 + 50031 32402 31256 31273 57700 57700 0.005273446990713637 VMQYKCFY 8 Unmodified _VMQYKCFY_ 0 0 0 L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|48|2|anti-sense L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|48|2|anti-sense L1ME1_dup15936|chr9:3463948-3464788:+|1.3720431402463926|0.1234006681249939|3.47|151.0|48|2|anti-sense MSMS UPN47_class_I_Rep_3 4 541.2462768554688 2 541.245906 1080.47726 NaN NaN NaN NaN NaN NaN NaN 44.451 1 47.695 47.195 48.195 3.2441 0 0 0 0.40625 1 9323 9323 2.3027 0.24298 1 50032 12242 31257 31274 57701 57701 -0.05976033083584298 VMRAYLQQL 9 Oxidation (M) _VM(Oxidation (M))RAYLQQL_ VM(1)RAYLQQL VM(56)RAYLQQL 0 0 1 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110872962-110874052:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF;chr12:110436201-110436665|35|54.97|0.0|22.39|-|2|None,ARPC3|1;chr12:110436201-110436557|148|37.44|0.0|21.84|-|2|None,ARPC3|1 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS UPN46_class_I_Rep_3 1 569.306640625 2 569.307884 1136.60121 0.42446 0.00024165 -0.39562 -0.00022523 0.028839 1.6418E-05 569.3076059290635 48.364 0.46819 48.364 48.114 48.583 0 58 46 2 0 0 0 0.032038 1 10067 10067 56.177 18.203 1 245470 50033 1963 31258 31275 57702 57702 61 0.038377610082534375 VMRERQKTVL 10 Unmodified _VMRERQKTVL_ 0 0 0 L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|243|3|anti-sense L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|243|3|anti-sense L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|243|3|anti-sense MSMS UPN48_class_I_Rep_3 7 630.38623046875 2 630.366264 1258.71798 NaN NaN NaN NaN NaN NaN NaN 69.621 1 73.134 72.634 73.634 3.5128 0 0 0 0.53105 1 16052 16052 1.4819 0 1 50034 14667 31259 31276 57703 57703 0.09896499227988897 VMRFHFKF 8 Unmodified _VMRFHFKF_ 0 0 0 Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|88|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|88|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|88|1|anti-sense MSMS UPN48_class_I_Rep_2 6 556.29638671875 2 556.297122 1110.57969 NaN NaN NaN NaN NaN NaN NaN 67.125 1 70.621 70.121 71.121 3.4964 0 0 0 0.388 1 15389 15389 12.532 0 1 50035 558 31260 31277 57704 57704 0.028824207701745763 VMRHRPFLLL 10 Unmodified _VMRHRPFLLL_ 0 0 0 REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF MSMS UPN47_class_I_Rep_3 4 641.3856201171875 2 641.38426 1280.75397 NaN NaN NaN NaN NaN NaN NaN 94.637 1 98.044 97.544 98.544 3.4068 0 0 0 0.53105 1 23548 23548 0.45834 0 1 + 50036 22061 31261 31278 57705 57705 0.12482001195553494 VMRILISR 8 Unmodified _VMRILISR_ 0 0 0 ENST00000533387.5_1_11:134130766-134134851:+|nuORF;nc|ENSG00000151498|Q9UKU7-2|ACAD8;ENSG00000151498|ENST00000281182|ACAD8 ENST00000533387.5_1_11:134130766-134134851:+|nuORF ENST00000533387.5_1_11:134130766-134134851:+|nuORF MSMS UPN48_class_I_Rep_3 7 494.3110656738281 2 494.310229 986.605906 NaN NaN NaN NaN NaN NaN NaN 55.101 1 58.661 58.161 59.161 3.5601 0 0 0 0.40604 1 11648 11648 2.5775 0 1 50037 3590 31262 31279 57706 57706 0.11206689941673176 VMRPCLYL 8 Unmodified _VMRPCLYL_ 0 0 0 REV__LTR86C_dup181|chrX:15743777-15744334:-|1.2649482969725645|0.0290274225459988|5.45|151.0|11|2|sense REV__LTR86C_dup181|chrX:15743777-15744334:-|1.2649482969725645|0.0290274225459988|5.45|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.7637023925781 2 497.764266 993.513979 0.073338 3.6505E-05 -0.99013 -0.00049285 -0.9168 -0.00045635 497.7636405042007 51.812 0.63171 55.406 55.066 55.698 3.5932 75 37 3 0 0 0 0.82752 1 11502 11502 5.2307 0 1 142690 + 50038 31030 31263 31280 57707 57707 0.016962635329718978 VMRPCLYL 8 Unmodified _VMRPCLYL_ 0 0 0 REV__LTR86C_dup181|chrX:15743777-15744334:-|1.2649482969725645|0.0290274225459988|5.45|151.0|11|2|sense REV__LTR86C_dup181|chrX:15743777-15744334:-|1.2649482969725645|0.0290274225459988|5.45|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.76385498046875 2 497.764266 993.513979 0.3123 0.00015545 -1.0195 -0.00050746 -0.70717 -0.000352 497.7637891915008 52.171 0.67919 55.504 55.036 55.715 3.3332 66 42 2 0 0 0 0.82752 1 11629 11629 5.2307 0 1 147790 + 50039 31030 31263 31280 57708 57708 0.016962635329718978 VMRPDPPR 8 Unmodified _VMRPDPPR_ 0 0 0 REV__MSTA-int_dup1402|chr8:60604362-60605827:+|3.501033239845388|0.1614020505981996|4.44|151.0|11|1|sense REV__MSTA-int_dup1402|chr8:60604362-60605827:+|3.501033239845388|0.1614020505981996|4.44|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 484.2581787109375 2 484.260736 966.50692 NaN NaN NaN NaN NaN NaN NaN 20.349 1 23.698 23.198 24.198 3.3496 0 0 0 0.40753 1 2083 2083 0.6015 0 1 + 50040 31865 31264 31281 57709 57709 0.022326669767721796 VMRWSSCVPI 10 Unmodified _VMRWSSCVPI_ 0 0 0 REV__L1MC4_dup15703|chr10:86488049-86488445:+|1.5538995887128544|0.0147885149483185|6.72|151.0|22|2|anti-sense REV__L1MC4_dup15703|chr10:86488049-86488445:+|1.5538995887128544|0.0147885149483185|6.72|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_1 5 589.2791137695312 2 589.296462 1176.57837 NaN NaN NaN NaN NaN NaN NaN 33.812 1 37.332 36.832 37.832 3.5201 0 0 0 0.53105 1 5326 5326 1.3295 0.13619 1 + 50041 26827 31265 31282 57710 57710 -0.0028558138085372775 VMSDHPAF 8 Unmodified _VMSDHPAF_ 0 0 0 MER31B_dup67|chr1:145192100-145192346:-|2.0798772612990284|0.0311348829690545|6.06|151.0|7|2|sense MER31B_dup67|chr1:145192100-145192346:-|2.0798772612990284|0.0311348829690545|6.06|151.0|7|2|sense MER31B_dup67|chr1:145192100-145192346:-|2.0798772612990284|0.0311348829690545|6.06|151.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 452.20404052734375 2 452.205096 902.395638 NaN NaN NaN NaN NaN NaN NaN 33.07 1 36.768 36.268 37.268 3.6983 0 0 0 0.40738 1 5776 5776 0.79363 0 1 50042 15915 31266 31283 57711 57711 -0.05946392451164684 VMSHSFKF 8 Unmodified _VMSHSFKF_ 0 0 0 L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|21|1|anti-sense L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|21|1|anti-sense L1ME3B_dup1796|chr4:2718752-2719198:+|1.6356768489547115|0.1033666904458438|3.98|151.0|21|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 491.795654296875 2 491.744388 981.474223 0.1898 9.3331E-05 -3.3805 -0.0016624 -3.1907 -0.001569 491.74262812167234 44.085 0.028488 47.847 47.835 47.864 3.7617 4 2 2 0 0 0 0.72333 1 8367 8367 3.9444 0.3479 1 18799 50043 12699 31267 31284 57712 57712 -0.01725540146082949 VMSLRGDS 8 Unmodified _VMSLRGDS_ 0 0 0 ENST00000485781.5_1_2:63815746-63815932:+|nuORF ENST00000485781.5_1_2:63815746-63815932:+|nuORF ENST00000485781.5_1_2:63815746-63815932:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 432.8851013183594 2 432.715827 863.417102 0.094441 4.0866E-05 1.0369 0.0004487 1.1314 0.00048956 432.7158611346947 99.486 0.0411 103.24 103.21 103.25 3.7575 7 4 2 0 0 0 0.72333 1 23620 23620 0 0 1 53568 50044 7034 31268 31285 57713 57713 -0.020070074224463497 VMSLRGDS 8 Unmodified _VMSLRGDS_ 0 0 0 ENST00000485781.5_1_2:63815746-63815932:+|nuORF ENST00000485781.5_1_2:63815746-63815932:+|nuORF ENST00000485781.5_1_2:63815746-63815932:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 432.715827 863.417102 -0.37639 -0.00016287 3.0078 0.0013015 2.6314 0.0011387 432.7162274856796 99.965 0.044174 103.41 103.39 103.44 3.4483 0.084978 0.0012151 NaN 0 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 35166 50045 7034 31268 31285 -0.020070074224463497 VMTQKLLF 8 Unmodified _VMTQKLLF_ 0 0 0 ENSG00000100726|ENST00000262319|TELO2 ENSG00000100726|ENST00000262319|TELO2 ENSG00000100726|ENST00000262319|TELO2 MSMS UPN46_class_I_Rep_3 1 490.2861633300781 2 490.285889 978.557224 NaN NaN NaN NaN NaN NaN NaN 57.694 1 57.694 57.194 58.194 0 0 0 0 0.40581 1 12657 12657 2.8892 0 1 50046 1529 31269 31286 57714 57714 0.06708776581933762 VMVGRFRW 8 Unmodified _VMVGRFRW_ 0 0 0 MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|91|2|anti-sense MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|91|2|anti-sense MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|91|2|anti-sense MSMS UPN48_class_I_Rep_3 7 525.7879638671875 2 525.786921 1049.55929 NaN NaN NaN NaN NaN NaN NaN 112.89 1 116.54 116.04 117.04 3.6568 0 0 0 0.40625 1 26830 26830 2.3027 0 1 50047 16187 31270 31287 57715 57715 0.036492501103793984 VMVSTFHKY 9 Unmodified _VMVSTFHKY_ 0 0 0 ENSG00000196154|ENST00000368716|S100A4;ENST00000468373.1_1_1:153516388-153518231:-|nuORF ENSG00000196154|ENST00000368716|S100A4 ENSG00000196154|ENST00000368716|S100A4 MULTI-MSMS UPN47_class_I_Rep_1 2 556.7850952148438 2 556.283877 1110.5532 0.4325 0.00024059 1.9198 0.0010679 2.3523 0.0013085 556.2863306117304 60.041 0.55016 63.439 63.268 63.818 3.3982 78 44 3 0 0 0 0.46434 1 14032 14032 4.3292 0 1 133720 50048 5284 31271 31288 57716 57716 0.002346870882092844 VMWFSCELL 9 Unmodified _VMWFSCELL_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-4|PARP14 REV__nc|ENSG00000173193|Q460N5-4|PARP14 MULTI-SECPEP UPN47_class_I_Rep_2 3 564.3428344726562 2 564.266838 1126.51912 0.092423 5.2151E-05 -0.84515 -0.00047689 -0.75273 -0.00042474 564.2662092315799 42.53 0.62754 45.891 45.53 46.158 3.3611 57 44 2 0 0 0 0.11598 1 8656 8656 11.64 5.2862 1 79215 + 50049 32063 31272 31289 57717 57717 -0.03907477395046044 VMYPVVILE 9 Unmodified _VMYPVVILE_ 0 0 0 L1PA3_dup2801|chr4:102697356-102702634:-|7.846325797400948|0.327652332305008|4.58|151.0|252|2|anti-sense;L1PA4_dup5502|chr7:107507908-107514058:+|4.860843333325131|0.1004401086778856|5.6|151.0|340|3|anti-sense L1PA3_dup2801|chr4:102697356-102702634:-|7.846325797400948|0.327652332305008|4.58|151.0|252|2|anti-sense L1PA3_dup2801|chr4:102697356-102702634:-|7.846325797400948|0.327652332305008|4.58|151.0|252|2|anti-sense MSMS UPN48_class_I_Rep_1 5 531.80029296875 2 531.798829 1061.5831 NaN NaN NaN NaN NaN NaN NaN 63.586 1 67.044 66.544 67.544 3.4578 0 0 0 0.1074 1 14326 14326 23.148 0.41214 1 50050 14250 31273 31290 57718 57718 0.05477626033575689 VNALRLNL 8 Unmodified _VNALRLNL_ 0 0 0 L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|136|2|anti-sense L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|136|2|anti-sense L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|136|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.7845458984375 2 456.784902 911.55525 -0.48217 -0.00022025 -0.43361 -0.00019807 -0.91578 -0.00041832 456.7845203130661 16.674 0.77102 20.06 19.767 20.538 3.3864 141 89 2 0 0 0 0.82752 1 1142 1142 2.3027 0 1 41770 50051 9534 31274 31291 57719 57719 0.09593483888306764 VNALRLNL 8 Unmodified _VNALRLNL_ 0 0 0 L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|136|2|anti-sense L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|136|2|anti-sense L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|136|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.78387451171875 2 456.784902 911.55525 -0.99642 -0.00045515 -0.13816 -6.3107E-05 -1.1346 -0.00051826 456.7847467970705 16.826 0.89334 20.188 19.911 20.804 3.3619 122 101 2 0 0 0 0.82752 1 1162 1162 2.3027 0 1 38020 50052 9534 31274 31291 57720 57720 0.09593483888306764 VNEEIKKKI 9 Unmodified _VNEEIKKKI_ 0 0 0 L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|77|3|sense;L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|109|3|sense;L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|75|3|sense;L1MA1_dup2319|chrX:54592834-54598139:-|1.7503338854009238|0.1575758097139831|3.47|151.0|52|1|sense;L1MA2_dup858|chr2:148220612-148224334:-|1.1669281258896425|0.0137875092089152|6.4|150.0|81|3|sense;L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|132|2|sense L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|77|3|sense L1M1_dup1735|chr3:121959116-121961859:+|10.77547205792517|0.0680825652484796|7.31|151.0|77|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 550.8374633789062 2 550.837331 1099.66011 0.034762 1.9148E-05 -0.22936 -0.00012634 -0.1946 -0.00010719 550.8371015875401 20.003 0.78798 23.399 23.114 23.902 3.3963 133 81 2 0 0 0 0.42249 1 2055 2055 6.7232 0 1 67327 50053 8496 31275 31292 57721 57721 0.11426560574227551 VNEGLVAEI 9 Unmodified _VNEGLVAEI_ 0 0 0 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MSMS UPN48_class_I_Rep_1 5 472.2585754394531 2 472.258382 942.502212 NaN NaN NaN NaN NaN NaN NaN 65.892 1 69.343 68.843 69.843 3.4516 0 0 0 0.38916 1 15025 15025 3.2813 0.97858 1 50054 3136 31276 31293 57722 57722 0.028660613149895653 VNEQIFRKV 9 Unmodified _VNEQIFRKV_ 0 0 0 REV__nc|ENSG00000114491|P11172-4|UMPS REV__nc|ENSG00000114491|P11172-4|UMPS MSMS UPN48_class_I_Rep_3 7 566.8259887695312 2 566.827298 1131.64004 NaN NaN NaN NaN NaN NaN NaN 22.19 1 25.905 25.405 26.405 3.7144 0 0 0 0.4007 1 2226 2226 0.52476 0 1 + 50055 18529 31277 31294 57723 57723 0.07948809634262943 VNETALYGK 9 Unmodified _VNETALYGK_ 0 0 0 Tigger1_dup2896|chr4:2471267-2472469:+|2.11417235437757|0.054377687618993|5.28|151.0|39|3|sense Tigger1_dup2896|chr4:2471267-2472469:+|2.11417235437757|0.054377687618993|5.28|151.0|39|3|sense Tigger1_dup2896|chr4:2471267-2472469:+|2.11417235437757|0.054377687618993|5.28|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 497.765380859375 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 39.375 1 43.105 42.605 43.605 3.7297 0 0 0 0.39518 1 6979 6979 1.8442 0 1 50056 33067 31278 31295 57724 57724 0.016094636892944436 VNFFNLLIL 9 Unmodified _VNFFNLLIL_ 0 0 0 L1M5_dup48734|chr17:64016866-64017999:+|1.5320862669009074|0.0463646899983395|5.05|151.0|59|1|anti-sense L1M5_dup48734|chr17:64016866-64017999:+|1.5320862669009074|0.0463646899983395|5.05|151.0|59|1|anti-sense L1M5_dup48734|chr17:64016866-64017999:+|1.5320862669009074|0.0463646899983395|5.05|151.0|59|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 546.941162109375 2 546.826235 1091.63792 -0.21802 -0.00011922 2.9701 0.0016241 2.7521 0.0015049 546.8269695199082 13.03 0.060666 13.03 12.98 13.041 0 5 3 2 0 0 0 0.12444 1 271 271 2.0598 0 1 11695 50057 9192 31279 31296 57725 57725 0.09576380896487535 VNFIFPFF 8 Unmodified _VNFIFPFF_ 0 0 0 REV__L1MDa_dup1431|chr3:141542935-141543841:-|1.3615408584247195|0.0435657622614127|4.97|151.0|48|2|anti-sense REV__L1MDa_dup1431|chr3:141542935-141543841:-|1.3615408584247195|0.0435657622614127|4.97|151.0|48|2|anti-sense MSMS UPN47_class_I_Rep_2 3 515.7313842773438 2 515.773471 1029.53239 NaN NaN NaN NaN NaN NaN NaN 64.239 1 67.494 66.994 67.994 3.2556 0 0 0 0.4032 1 15290 15290 6.3541 0 1 + 50058 27501 31280 31297 57726 57726 0.01880464770852086 VNFRLYQL 8 Unmodified _VNFRLYQL_ 0 0 0 ENSG00000100029|ENST00000354694|PES1;nc|ENSG00000100029|O00541-2|PES1 ENSG00000100029|ENST00000354694|PES1 ENSG00000100029|ENST00000354694|PES1 MSMS UPN48_class_I_Rep_1 5 526.7979125976562 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 25.317 1 28.884 28.384 29.384 3.5667 0 0 0 0.40746 1 2931 2931 0.69038 0 1 50059 1465 31281 31298 57727 57727 0.05773753059793307 VNGEVAATEA 10 Unmodified _VNGEVAATEA_ 0 0 0 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MSMS UPN47_class_I_Rep_1 2 480.7361145019531 2 480.735271 959.45599 NaN NaN NaN NaN NaN NaN NaN 70.123 1 73.494 72.994 73.994 3.3713 0 0 0 0.53105 1 17025 17025 1.4819 0 1 50060 1285 31282 31299 57728 57728 -0.025360035871017317 VNGLVLSLY 9 Unmodified _VNGLVLSLY_ 0 0 0 REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A MSMS UPN46_class_I_Rep_3 1 489.286865234375 2 489.286943 976.559333 NaN NaN NaN NaN NaN NaN NaN 79.716 1 79.716 79.216 80.216 0 0 0 0 0.37476 1 18740 18740 6.7232 0 1 + 50061 20998 31283 31300 57729 57729 0.0701152859138574 VNGPKRRF 8 Unmodified _VNGPKRRF_ 0 0 0 REV__L1MC4_dup3119|chr2:135157856-135158940:+|1.912280406837212|0.4215869355034347|2.18|151.0|65|2|anti-sense REV__L1MC4_dup3119|chr2:135157856-135158940:+|1.912280406837212|0.4215869355034347|2.18|151.0|65|2|anti-sense MSMS UPN47_class_I_Rep_2 3 487.28741455078125 2 487.288143 972.561733 NaN NaN NaN NaN NaN NaN NaN 26.521 1 30.015 29.515 30.515 3.4945 0 0 0 0.40604 1 3850 3850 2.5775 0 1 + 50062 26904 31284 31301 57730 57730 0.0743542183969339 VNGPKRRF 8 Unmodified _VNGPKRRF_ 0 0 0 REV__L1MC4_dup3119|chr2:135157856-135158940:+|1.912280406837212|0.4215869355034347|2.18|151.0|65|2|anti-sense REV__L1MC4_dup3119|chr2:135157856-135158940:+|1.912280406837212|0.4215869355034347|2.18|151.0|65|2|anti-sense MSMS UPN47_class_I_Rep_2 3 487.2863464355469 2 487.288143 972.561733 NaN NaN NaN NaN NaN NaN NaN 26.662 1 30.157 29.657 30.657 3.4945 0 0 0 0.40625 1 3891 3891 2.3027 0 1 + 50063 26904 31284 31301 57731 57731 0.0743542183969339 VNHSSFHAMG 10 Unmodified _VNHSSFHAMG_ 0 0 0 nc|ENSG00000128610|A0PJY2-3|FEZF1;ENSG00000128610|ENST00000442488|FEZF1 nc|ENSG00000128610|A0PJY2-3|FEZF1 nc|ENSG00000128610|A0PJY2-3|FEZF1 MSMS UPN48_class_I_Rep_2 6 543.7438354492188 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 113.89 1 117.55 117.05 118.05 3.663 0 0 0 0.53105 1 27195 27195 1.3295 0 1 50064 2597 31285 31302 57732 57732 -0.06805415270878257 VNIEKYLQL 9 Unmodified _VNIEKYLQL_ 0 0 0 REV__Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|67|3|sense REV__Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|67|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 560.3224487304688 2 560.324057 1118.63356 0.4376 0.0002452 -3.9995 -0.002241 -3.5619 -0.0019958 560.322231041418 87.095 0.059334 87.095 87.066 87.125 0 12 5 3 0 0 0 0.48846 1 20854 20854 1.8442 0 1 145490 + 50065 32362 31286 31303 57733 57733 0.07898871682891695 VNIIRNGQ 8 Unmodified _VNIIRNGQ_ 0 0 0 L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|163|3|sense L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|163|3|sense L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|163|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 457.26434326171875 2 457.264333 912.514114 0.073621 3.3664E-05 0.075283 3.4424E-05 0.1489 6.8088E-05 457.264245092214 72.821 1.6651 76.294 75.47 77.135 3.4732 273 145 3 0 0 0 0.82752 1 17342 17342 4.756 0 1 285570 50066 14934 31287 31304 57734 57734 0.05435722848858404 VNIIRNGQ 8 Unmodified _VNIIRNGQ_ 0 0 0 L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|163|3|sense L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|163|3|sense L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|163|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 457.2640686035156 2 457.264333 912.514114 0.16319 7.4623E-05 0.010421 4.765E-06 0.17361 7.9388E-05 457.2641985747419 72.45 1.6171 76.015 75.426 77.043 3.5645 245 162 2 0 0 0 0.82752 1 17249 17249 4.756 0 1 245260 50067 14934 31287 31304 57735 57735 0.05435722848858404 VNILVFQA 8 Unmodified _VNILVFQA_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I MSMS UPN47_class_I_Rep_3 4 452.26849365234375 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 14.215 1 17.585 17.085 18.085 3.3697 0 0 0 0.40746 1 498 498 0.69038 0 1 + 50068 18108 31288 31305 57736 57736 0.06739276765472368 VNINKILEF 9 Unmodified _VNINKILEF_ 0 0 0 REV__L1MC4_dup18128|chr12:116110389-116111280:+|2.92090571864798|0.0234792236268863|6.96|151.0|30|3|sense REV__L1MC4_dup18128|chr12:116110389-116111280:+|2.92090571864798|0.0234792236268863|6.96|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 545.3173828125 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 83.856 1 83.856 83.356 84.356 0 0 0 0 0.28335 1 19933 19933 11.64 0 1 + 50069 26841 31289 31306 57737 57737 0.08222889028479585 VNIPITDQLLI 11 Unmodified _VNIPITDQLLI_ 0 0 0 Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|18|2|sense Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|18|2|sense Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 619.86962890625 2 619.871371 1237.72819 NaN NaN NaN NaN NaN NaN NaN 84.711 1 88.308 87.808 88.808 3.5973 0 0 0 0.38417 1 20280 20280 1.0715 0.10919 1 50070 550 31290 31307 57738 57738 0.11883385434225602 VNIPKLKKKK 10 Unmodified _VNIPKLKKKK_ 0 0 0 Tigger4_dup177|chr2:63244940-63247760:+|1.0649315729304478|0.0349077574360848|4.93|149.0|90|3|sense Tigger4_dup177|chr2:63244940-63247760:+|1.0649315729304478|0.0349077574360848|4.93|149.0|90|3|sense Tigger4_dup177|chr2:63244940-63247760:+|1.0649315729304478|0.0349077574360848|4.93|149.0|90|3|sense MSMS UPN46_class_I_Rep_3 1 598.4159545898438 2 598.416083 1194.81761 NaN NaN NaN NaN NaN NaN NaN 69.266 1 69.266 68.766 69.766 0 0 0 0 0.53105 1 15864 15864 0 0 1 50071 33420 31291 31308 57739 57739 0.22799684904225614 VNIQIQEIQRI 11 Unmodified _VNIQIQEIQRI_ 0 0 0 L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|83|2|sense;L1PA7_dup9222|chr10:42533748-42540162:-|8.587312682190495|0.4190588025332949|4.36|151.0|142|3|sense;L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|19|1|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|83|2|sense L1PA3_dup1327|chr2:175957589-175963710:+|1.3312383873771405|0.1458660412225663|3.19|151.0|83|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.93280029296875 3 451.933143 1352.7776 0.17075 7.7167E-05 -1.227 -0.00055452 -1.0563 -0.00047736 451.93259024839887 91.82 0.29845 95.526 95.473 95.772 3.7053 61 37 2 0 0 0 0.67356 1 22916 22916 1.1098 0.65524 1 263800 50072 14228 31292 31309 57740 57740 0.1153209344302013 VNIRVHAS 8 Unmodified _VNIRVHAS_ 0 0 0 L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 448.2591247558594 2 448.259051 894.503549 0.19652 8.8093E-05 -0.046038 -2.0637E-05 0.15049 6.7456E-05 448.25901978948303 80.675 0.59554 84.338 84.101 84.697 3.6635 140 78 2 0 0 0 0.82752 1 19108 19108 4.3292 0.38484 1 669650 50073 14937 31293 31310 57741 57741 0.05207740194418875 VNIRVHAS 8 Unmodified _VNIRVHAS_ 0 0 0 L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 448.259051 894.503549 0.097161 4.3553E-05 -0.23239 -0.00010417 -0.13523 -6.0619E-05 448.258881661631 80.964 0.75848 84.452 84.135 84.894 3.4874 0.062484 -0.00011086 NaN 4.3292 172 77 3 NaN NaN NaN NaN 0 NaN NaN 0 525470 50074 14937 31293 31310 0.05207740194418875 VNIRVHAS 8 Unmodified _VNIRVHAS_ 0 0 0 L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 448.259051 894.503549 -0.11448 -5.1318E-05 -0.048841 -2.1893E-05 -0.16332 -7.3211E-05 448.2590187976337 80.994 0.80858 84.378 84.058 84.867 3.3839 -0.011506 5.3695E-05 NaN 4.3292 207 98 3 NaN NaN NaN NaN 0 NaN NaN 0 562560 50075 14937 31293 31310 0.05207740194418875 VNIRVHAS 8 Unmodified _VNIRVHAS_ 0 0 0 L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense L1PA8_dup3355|chr6:154780356-154781093:-|1.2710716111629037|0.0236233143846011|5.75|151.0|44|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 448.259051 894.503549 0.19652 8.8093E-05 -0.046038 -2.0637E-05 0.15049 6.7456E-05 448.25901978948303 80.675 0.59554 84.338 84.101 84.697 3.6635 -0.050978 5.6208E-05 NaN 4.3292 140 78 2 NaN NaN NaN NaN 0 NaN NaN 0 669650 50076 14937 31293 31310 0.05207740194418875 VNITRPRG 8 Unmodified _VNITRPRG_ 0 0 0 L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 456.7721862792969 2 456.772326 911.530098 0.11548 5.2747E-05 -0.075652 -3.4556E-05 0.039826 1.8191E-05 456.7721817131663 80.949 0.74101 84.437 84.097 84.838 3.4874 138 73 3 0 0 0 0.82752 1 20147 20147 2.3027 2.3027 1 322230 50077 11853 31294 31311 57742 57742 0.07079429085752054 VNITRPRG 8 Unmodified _VNITRPRG_ 0 0 0 L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 456.7720947265625 2 456.772326 911.530098 -0.13916 -6.3565E-05 0.23051 0.00010529 0.091349 4.1726E-05 456.77232281723144 81.037 0.66075 84.36 84.077 84.738 3.3231 152 78 3 0 0 0 0.82752 1 20312 20312 7.9102 0.62092 1 367650 50078 11853 31294 31311 57743 57743 0.07079429085752054 VNITRPRG 8 Unmodified _VNITRPRG_ 0 0 0 L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense L1MCc_dup1106|chr5:36107172-36107926:-|1.1125469404993902|0.2051882708765146|2.44|151.0|34|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 456.7723083496094 2 456.772326 911.530098 0.21241 9.7024E-05 -0.13814 -6.3098E-05 0.074273 3.3926E-05 456.77216418211856 80.624 0.52743 84.287 84.14 84.667 3.6635 92 69 2 0 0 0 0.82752 1 19104 19104 7.9102 1.187 1 445190 50079 11853 31294 31311 57744 57744 0.07079429085752054 VNIVFVLLCFV 11 Unmodified _VNIVFVLLCFV_ 0 0 0 REV__L1MA3_dup1297|chr3:4202739-4205014:-|1.0481033146682612|0.0080189472930684|7.03|151.0|70|3|sense REV__L1MA3_dup1297|chr3:4202739-4205014:-|1.0481033146682612|0.0080189472930684|7.03|151.0|70|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 633.36962890625 2 633.369952 1264.72535 0.72148 0.00045696 -1.4917 -0.00094481 -0.77024 -0.00048785 633.87078209946 89.666 0.25769 89.666 89.547 89.805 0 40 23 3 0 0 0 0.67264 1 21554 21554 1.1933 1.1933 1 241520 + 50080 24967 31295 31312 57745 57745 0.1035783877571248 VNKFFRSII 9 Unmodified _VNKFFRSII_ 0 0 0 REV__L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|166|1|anti-sense REV__L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|166|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.334716796875 2 562.334759 1122.65496 0.50411 0.00028348 0.24776 0.00013933 0.75187 0.0004228 562.3343932343262 109.44 0.66056 112.97 112.93 113.59 3.5347 201 94 3 0 0 0 0.48846 1 27012 27012 1.8442 0 1 1926600 + 50081 24891 31296 31313 57746 57746 0.09854301502286944 VNKFKLKSFT 10 Unmodified _VNKFKLKSFT_ 0 0 0 REV__L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|78|2|anti-sense REV__L1ME1_dup15680|chr8:120665472-120667082:-|1.7662862275117963|0.0499485250768601|5.14|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_3 4 606.361328125 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 109.38 1 112.91 112.41 113.41 3.5347 0 0 0 0.53105 1 26870 26870 3.2813 0 1 + 50082 27614 31297 31314 57747 57747 0.11046839845243994 VNKGKYNF 8 Unmodified _VNKGKYNF_ 0 0 0 REV__CALR|p.T173Nfs*11|1|0.41|ENSG00000179218|chr19:12940266-12940267|-/A|frameshift_variant REV__CALR|p.T173Nfs*11|1|0.41|ENSG00000179218|chr19:12940266-12940267|-/A|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 485.2611389160156 2 485.261259 968.507966 0.23565 0.00011435 -0.18803 -9.1242E-05 0.047628 2.3112E-05 485.26106531095036 51.562 0.88268 54.778 54.352 55.234 3.2163 73 45 2 0 0 0 0.82752 1 11540 11540 2.5775 0 1 119530 + 50083 17262 31298 31315 57748 57748 0.022452046173157214 VNKGVIRN 8 Unmodified _VNKGVIRN_ 0 0 0 REV__L1MEc_dup1939|chr2:23851813-23852295:+|1.0227141401479731|0.0115432853598871|6.47|151.0|18|3|sense REV__L1MEc_dup1939|chr2:23851813-23852295:+|1.0227141401479731|0.0115432853598871|6.47|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 450.2754821777344 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 89.336 1 89.336 88.836 89.836 0 0 0 0 0.40625 1 21489 21489 2.3027 0.24298 1 + 50084 28432 31299 31316 57749 57749 0.08152313228504227 VNKGVIRN 8 Unmodified _VNKGVIRN_ 0 0 0 REV__L1MEc_dup1939|chr2:23851813-23852295:+|1.0227141401479731|0.0115432853598871|6.47|151.0|18|3|sense REV__L1MEc_dup1939|chr2:23851813-23852295:+|1.0227141401479731|0.0115432853598871|6.47|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 450.27557373046875 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 90.249 1 90.249 89.749 90.749 0 0 0 0 0.40625 1 21756 21756 2.3027 0.24298 1 + 50085 28432 31299 31316 57750 57750 0.08152313228504227 VNKKKQVL 8 Unmodified _VNKKKQVL_ 0 0 0 Charlie5_dup183|chr1:235302381-235302639:+|1.1922623502547804|0.0037116905751993|8.33|151.0|11|1|anti-sense Charlie5_dup183|chr1:235302381-235302639:+|1.1922623502547804|0.0037116905751993|8.33|151.0|11|1|anti-sense Charlie5_dup183|chr1:235302381-235302639:+|1.1922623502547804|0.0037116905751993|8.33|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 478.8147888183594 2 478.816202 955.617851 NaN NaN NaN NaN NaN NaN NaN 61.203 1 64.716 64.216 65.216 3.5128 0 0 0 0.40625 1 13506 13506 2.3027 0 1 50086 532 31300 31317 57751 57751 0.13826629956508896 VNKKLVWPV 9 Unmodified _VNKKLVWPV_ 0 0 0 REV__L1MB8_dup3149|chr3:125345044-125346470:+|1.107493960111305|0.0139871474971404|6.31|151.0|79|2|anti-sense REV__L1MB8_dup3149|chr3:125345044-125346470:+|1.107493960111305|0.0139871474971404|6.31|151.0|79|2|anti-sense MSMS UPN48_class_I_Rep_1 5 541.8403930664062 2 541.839677 1081.6648 NaN NaN NaN NaN NaN NaN NaN 87.773 1 91.392 90.892 91.892 3.6187 0 0 0 0.40038 1 21039 21039 0.6015 0 1 + 50087 26406 31301 31318 57752 57752 0.1272348950765263 VNKNIDWIIKK 11 Unmodified _VNKNIDWIIKK_ 0 0 0 REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|44|3|sense REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 457.60986328125 3 457.61 1369.80817 -0.3598 -0.00016465 0.056926 2.605E-05 -0.30287 -0.0001386 457.6100071348705 32.619 0.83664 36.332 35.98 36.817 3.7131 131 68 3 0 0 0 0.66279 1 5646 5646 2.084 1.578 1 148800 + 50088 30523 31302 31319 57753 57753 0.1380587182804902 VNKNIDWIIKK 11 Unmodified _VNKNIDWIIKK_ 0 0 0 REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|44|3|sense REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|44|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 457.61 1369.80817 -0.3598 -0.00016465 0.056926 2.605E-05 -0.30287 -0.0001386 457.6100071348705 32.619 0.83664 36.332 35.98 36.817 3.7131 -0.058633 -0.00013882 NaN 2.084 131 68 3 NaN NaN NaN NaN 0 NaN NaN 0 148800 + 50089 30523 31302 31319 0.1380587182804902 VNKNIDWIIKK 11 Unmodified _VNKNIDWIIKK_ 0 0 0 REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|44|3|sense REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|44|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 457.61 1369.80817 -0.47418 -0.00021699 0.37842 0.00017317 -0.095761 -4.3821E-05 457.61001638214105 32.995 0.67369 36.45 36.112 36.785 3.4547 0.058633 0.00030253 NaN 2.084 111 53 3 NaN NaN NaN NaN 0 NaN NaN 0 132160 + 50090 30523 31302 31319 0.1380587182804902 VNKPYLPM 8 Unmodified _VNKPYLPM_ 0 0 0 REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 MSMS UPN46_class_I_Rep_3 1 481.2622375488281 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 115.61 1 115.61 115.11 116.11 0 0 0 0 0.40738 1 28599 28599 0.79363 0 1 + 50091 19857 31303 31320 57754 57754 0.028439170307706263 VNKYDEGKF 9 Unmodified _VNKYDEGKF_ 0 0 0 L1MC5a_dup5346|chr5:98909236-98910934:-|1.5230409662554825|0.0491620997165702|4.95|151.0|70|3|sense L1MC5a_dup5346|chr5:98909236-98910934:-|1.5230409662554825|0.0491620997165702|4.95|151.0|70|3|sense L1MC5a_dup5346|chr5:98909236-98910934:-|1.5230409662554825|0.0491620997165702|4.95|151.0|70|3|sense MSMS UPN48_class_I_Rep_3 7 550.2747192382812 2 550.274564 1098.53457 NaN NaN NaN NaN NaN NaN NaN 42.218 1 45.859 45.359 46.359 3.6415 0 0 0 0.25702 1 7712 7712 13.042 0 1 50092 11753 31304 31321 57755 57755 -0.010751512820206699 VNLANFVK 8 Unmodified _VNLANFVK_ 0 0 0 nc|ENSG00000164100|O95803-3|NDST3;ENSG00000164100|ENST00000296499|NDST3 nc|ENSG00000164100|O95803-3|NDST3 nc|ENSG00000164100|O95803-3|NDST3 MSMS UPN47_class_I_Rep_3 4 452.7572937011719 2 452.766178 903.517802 NaN NaN NaN NaN NaN NaN NaN 19.442 1 22.793 22.293 23.293 3.3514 0 0 0 0.40746 1 1818 1818 0.69038 0 1 50093 4081 31305 31322 57756 57756 0.06218392622713509 VNLKIQKPVK 10 Unmodified _VNLKIQKPVK_ 0 0 0 REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 583.8834228515625 2 583.884616 1165.75468 0.49826 0.00029092 -1.9673 -0.0011487 -1.469 -0.00085775 583.8831488393552 107.97 0.11021 111.61 111.56 111.67 3.6355 10 5 4 0 0 0 0.56033 1 26497 26497 3.5965 0.31518 1 641890 + 50094 28142 31306 31323 57757 57757 0.1784311911619625 VNLKIQKPVK 10 Unmodified _VNLKIQKPVK_ 0 0 0 REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 583.884616 1165.75468 0.49826 0.00029092 -1.9673 -0.0011487 -1.469 -0.00085775 583.8831488393552 107.97 0.11021 111.61 111.56 111.67 3.6355 -0.17861 -0.00040876 NaN 3.5965 10 5 4 NaN NaN NaN NaN 0 NaN NaN 0 641890 + 50095 28142 31306 31323 0.1784311911619625 VNLKIQKPVK 10 Unmodified _VNLKIQKPVK_ 0 0 0 REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 583.884616 1165.75468 0.63476 0.00037063 -1.8062 -0.0010546 -1.1715 -0.000684 583.8834930307233 108.22 0.058807 111.76 111.73 111.79 3.5333 -0.033392 -0.00022066 NaN 3.5965 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1056900 + 50096 28142 31306 31323 0.1784311911619625 VNLKIQKPVK 10 Unmodified _VNLKIQKPVK_ 0 0 0 REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 583.884616 1165.75468 0.4808 0.00028073 -1.5422 -0.00090044 -1.0614 -0.00061971 583.883549708966 108.2 0.29428 111.87 111.72 112.01 3.6746 0.085281 8.7703E-05 NaN 3.5965 50 33 2 NaN NaN NaN NaN 0 NaN NaN 0 2842000 + 50097 28142 31306 31323 0.1784311911619625 VNLKIQKPVK 10 Unmodified _VNLKIQKPVK_ 0 0 0 REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense REV__L1ME3D_dup1945|chr7:149486060-149486843:+|1.5532563851845953|0.1954210627190263|2.99|151.0|14|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 583.884616 1165.75468 0.4963 0.00028978 -1.2676 -0.00074013 -0.7713 -0.00045035 583.8836739858205 108.23 0.066635 111.92 111.86 111.93 3.6813 0.12672 0.00040833 NaN 3.5965 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2674500 + 50098 28142 31306 31323 0.1784311911619625 VNLKKVRN 8 Unmodified _VNLKKVRN_ 0 0 0 REV__ENSG00000141200|ENST00000268919|KIF2B REV__ENSG00000141200|ENST00000268919|KIF2B MSMS UPN47_class_I_Rep_3 4 485.811767578125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 73.272 1 76.499 75.999 76.999 3.2271 0 0 0 0.40625 1 18085 18085 2.3027 0 1 + 50099 19367 31307 31324 57758 57758 0.12232861670986495 VNLKPLRP 8 Unmodified _VNLKPLRP_ 0 0 0 REV__L1ME3A_dup8495|chr9:128681391-128681688:-|1.9528764675788748|0.0419789401143978|5.54|151.0|1|1|sense REV__L1ME3A_dup8495|chr9:128681391-128681688:-|1.9528764675788748|0.0419789401143978|5.54|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 468.8020935058594 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 85.666 1 89.037 88.537 89.537 3.3716 0 0 0 0.40746 1 21461 21461 0.69038 0 1 + 50100 28038 31308 31325 57759 57759 0.12126360785021006 VNLKTKQLN 9 Unmodified _VNLKTKQLN_ 0 0 0 L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|58|2|sense L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|58|2|sense L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|58|2|sense MSMS UPN46_class_I_Rep_3 1 529.4716186523438 2 529.321848 1056.62914 NaN NaN NaN NaN NaN NaN NaN 77.013 1 77.013 76.513 77.513 0 0 0 0 0.4007 1 17984 17984 0.52476 0 1 50101 12088 31309 31326 57760 57760 0.10309407260001535 VNLLGSSVLYL 11 Unmodified _VNLLGSSVLYL_ 0 0 0 REV__L1MB7_dup19542|chr17:2142913-2143761:+|1.1465391715107949|0.0160828727063086|6.16|151.0|40|1|anti-sense REV__L1MB7_dup19542|chr17:2142913-2143761:+|1.1465391715107949|0.0160828727063086|6.16|151.0|40|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.3432006835938 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 82.494 1 86.069 85.569 86.569 3.5753 0 0 0 0.38417 1 19702 19702 1.3295 0.72803 1 + 50102 26197 31310 31327 57761 57761 0.09415427371459373 VNLNLLFLY 9 Unmodified _VNLNLLFLY_ 0 0 0 MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|44|3|sense MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|44|3|sense MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|44|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 554.823974609375 2 554.823692 1107.63283 0.38838 0.00021548 -0.62457 -0.00034653 -0.23619 -0.00013104 554.8231841506561 56.666 0.5751 59.838 59.461 60.036 3.1721 61 34 2 0 0 0 0.3898 1 13041 13041 8.5933 0 1 130790 50103 16075 31311 31328 57762 57762 0.0833207703383323 VNLPRTVWLP 10 Unmodified _VNLPRTVWLP_ 0 0 0 REV__L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|201|1|anti-sense REV__L1PA4_dup7066|chrX:56157404-56162912:-|1.4603898269876172|0.0318039232367239|5.52|150.0|201|1|anti-sense MSMS UPN46_class_I_Rep_3 1 597.8557739257812 2 597.853316 1193.69208 NaN NaN NaN NaN NaN NaN NaN 90.33 1 90.33 89.83 90.83 0 0 0 0 0.53105 1 21780 21780 1.6526 0.45928 1 + 50104 29668 31312 31329 57763 57763 0.10297973048022868 VNLQGIEMEL 10 Unmodified _VNLQGIEMEL_ 0 0 0 REV__ENSG00000244607|ENST00000310232|CCDC13 REV__ENSG00000244607|ENST00000310232|CCDC13 MSMS UPN48_class_I_Rep_3 7 573.2974853515625 2 573.297181 1144.57981 NaN NaN NaN NaN NaN NaN NaN 78.933 1 82.555 82.055 83.055 3.6216 0 0 0 0.53105 1 18701 18701 1.4819 0.15237 1 + 50105 21341 31313 31330 57764 57764 0.013303311888876124 VNLRNKAK 8 Unmodified _VNLRNKAK_ 0 0 0 REV__ENSG00000164299|ENST00000296739|SPZ1 REV__ENSG00000164299|ENST00000296739|SPZ1 MSMS UPN48_class_I_Rep_2 6 471.7951354980469 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 117.67 1 121.34 120.84 121.84 3.6627 0 0 0 0.40746 1 28208 28208 0.69038 0 1 + 50106 20050 31314 31331 57765 57765 0.1039228863688777 VNLRPKKG 8 Unmodified _VNLRPKKG_ 0 0 0 REV__nc|ENSG00000163535|Q562F6-2|SGO2 REV__nc|ENSG00000163535|Q562F6-2|SGO2 MSMS UPN48_class_I_Rep_3 7 456.3011474609375 2 456.292894 910.571235 NaN NaN NaN NaN NaN NaN NaN 46.075 1 49.712 49.212 50.212 3.6369 0 0 0 0.40604 1 8894 8894 2.5775 0 1 + 50107 19982 31315 31332 57766 57766 0.11237190125223151 VNLRSINK 8 Unmodified _VNLRSINK_ 0 0 0 nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS nc|ENSG00000188158|Q6T4R5-4|NHS nc|ENSG00000188158|Q6T4R5-4|NHS MULTI-MSMS UPN47_class_I_Rep_1 2 472.96142578125 2 472.287808 942.561064 0.18122 8.5587E-05 -0.05347 -2.5253E-05 0.12775 6.0333E-05 472.28771761839243 86.289 1.5919 89.905 89.439 91.031 3.6153 534 196 4 0 0 0 0.82752 1 21672 21672 0.69038 0.69038 1 5200400 50108 5220 31316 31333 57767 57767 0.08748582399982752 VNLRSINK 8 Unmodified _VNLRSINK_ 0 0 0 nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS nc|ENSG00000188158|Q6T4R5-4|NHS nc|ENSG00000188158|Q6T4R5-4|NHS MSMS UPN47_class_I_Rep_2 3 472.2873840332031 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 91.047 1 94.508 94.008 95.008 3.4613 0 0 0 0.40746 1 22556 22556 0.69038 0 1 50109 5220 31316 31333 57768 57768 0.08748582399982752 VNLSSRRV 8 Unmodified _VNLSSRRV_ 0 0 0 L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 465.7771911621094 2 465.777608 929.540663 0.085049 3.9614E-05 -0.35247 -0.00016417 -0.26742 -0.00012456 465.7773804352013 72.873 1.3129 76.253 75.455 76.768 3.3799 149 95 2 0 0 0 0.82752 3 17783 17783;17897;17963 0.69038 0 1 187210 50110 10165 31317 31334 57769;57770;57771 57769 0.07307411740180214 VNLSSRRV 8 Unmodified _VNLSSRRV_ 0 0 0 L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 465.77703857421875 2 465.777608 929.540663 0.10304 4.7995E-05 -0.21026 -9.7936E-05 -0.10722 -4.9941E-05 465.7773347494823 73.268 0.49315 76.749 76.657 77.151 3.4812 72 46 2 0 0 0 0.72333 1 17343 17343 0.69038 0 1 131730 50111 10165 31317 31334 57772 57772 0.07307411740180214 VNLSSRRV 8 Unmodified _VNLSSRRV_ 0 0 0 L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 465.7782897949219 2 465.777608 929.540663 0.19308 8.9932E-05 -0.21731 -0.00010122 -0.024229 -1.1285E-05 465.77741853204094 85.491 0.6516 89.197 88.901 89.552 3.7058 193 77 3 0 0 0 0.82752 1 20272 20272 2.3027 2.3027 1 515110 50112 10165 31317 31334 57773 57773 0.07307411740180214 VNLSSRRV 8 Unmodified _VNLSSRRV_ 0 0 0 L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|26|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 465.7772521972656 2 465.777608 929.540663 0.24727 0.00011518 -0.64352 -0.00029974 -0.39624 -0.00018456 465.7772098305443 73.009 0.58082 76.546 76.136 76.717 3.5373 65 47 2 0 0 0 0.82752 1 16991 16991 0.69038 0 1 227570 50113 10165 31317 31334 57774 57774 0.07307411740180214 VNLSYWDEF 9 Unmodified _VNLSYWDEF_ 0 0 0 REV__L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|141|2|anti-sense REV__L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|141|2|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7680053710938 2 586.766571 1171.51859 NaN NaN NaN NaN NaN NaN NaN 115.28 1 118.91 118.41 119.41 3.6282 0 0 0 0.39428 1 28042 28042 2.0598 0 1 + 50114 25560 31318 31335 57775 57775 -0.06030857518931043 VNLTTFRL 8 Unmodified _VNLTTFRL_ 0 0 0 ENSG00000136878|ENST00000372429|USP20 ENSG00000136878|ENST00000372429|USP20 ENSG00000136878|ENST00000372429|USP20 MSMS UPN46_class_I_Rep_3 1 482.28399658203125 2 482.284734 962.554916 NaN NaN NaN NaN NaN NaN NaN 41 1 41 40.5 41.5 0 0 0 0 0.40604 1 8000 8000 2.5775 0 1 50115 2994 31319 31336 57776 57776 0.07214064168476853 VNLVINRF 8 Unmodified _VNLVINRF_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|226|2|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|226|2|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|226|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7912902832031 2 487.792727 973.5709 0.24907 0.00012149 -1.1788 -0.00057499 -0.92968 -0.00045349 487.79185571128846 74.755 0.77141 78.345 77.885 78.656 3.59 135 85 2 0 0 0 0.82752 1 17499 17499 0.69038 0 1 213500 50116 14104 31320 31337 57777 57777 0.0830577040536582 VNLVYGLTI 9 Unmodified _VNLVYGLTI_ 0 0 0 REV__L1M4_dup14806|chr12:65394322-65395184:+|2.9836463521072827|0.0288139048399316|6.69|150.0|57|3|anti-sense REV__L1M4_dup14806|chr12:65394322-65395184:+|2.9836463521072827|0.0288139048399316|6.69|150.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 496.293212890625 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 95.161 1 98.778 98.278 99.278 3.6167 0 0 0 0.39518 1 22912 22912 1.8442 0 1 + 50117 24373 31321 31338 57778 57778 0.0793181510841805 VNLYHLDLF 9 Unmodified _VNLYHLDLF_ 0 0 0 Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|6|1|sense Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|6|1|sense Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.30322265625 2 567.303124 1132.5917 0.58209 0.00033022 0.30737 0.00017437 0.88945 0.00050459 567.3032735410006 58.223 0.70216 61.721 61.403 62.105 3.4987 65 41 2 0 0 0 0.47493 1 12748 12748 3.2813 0 1 195120 50118 504 31322 31339 57779 57779 0.030703159943641367 VNMNIRPI 8 Unmodified _VNMNIRPI_ 0 0 0 REV__L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|69|2|anti-sense REV__L1MEf_dup511|chr1:176037436-176038537:+|1.542491670643856|0.0250355153807831|5.95|151.0|69|2|anti-sense MSMS UPN47_class_I_Rep_2 3 478.7708740234375 2 478.770937 955.527321 NaN NaN NaN NaN NaN NaN NaN 35.227 1 38.653 38.153 39.153 3.4253 0 0 0 0.40625 1 6468 6468 2.3027 0 1 + 50119 28657 31323 31340 57780 57780 0.04777837636572713 VNMWLRTLDDC 11 Unmodified _VNMWLRTLDDC_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1 MSMS UPN48_class_I_Rep_2 6 456.2443542480469 3 455.881174 1364.62169 NaN NaN NaN NaN NaN NaN NaN 28.066 1 31.698 31.198 32.198 3.6311 0 0 0 0.38417 1 3813 3813 0.50596 0 1 + 50120 20008 31324 31341 57781 57781 -0.046034363942226264 VNMWRMLLC 9 Unmodified _VNMWRMLLC_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MSMS UPN47_class_I_Rep_2 3 583.2891845703125 2 583.287582 1164.56061 NaN NaN NaN NaN NaN NaN NaN 20.28 1 23.687 23.187 24.187 3.4074 0 0 0 0.4029 1 2075 2075 0 0 1 50121 2055 31325 31342 57782 57782 -0.015086199073493844 VNNKKKVHS 9 Unmodified _VNNKKKVHS_ 0 0 0 nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD nc|ENSG00000151116|Q8IX04-6|UEVLD MULTI-MSMS UPN46_class_I_Rep_3 1 527.3118286132812 2 527.311815 1052.60908 -0.27202 -0.00014344 0.00299 1.5767E-06 -0.26903 -0.00014186 527.3117047981843 13.454 0.35594 13.454 13.362 13.717 0 78 42 3 0 0 0 0.48846 1 418 418 1.8442 0 1 75439 50122 3576 31326 31343 57783 57783 0.08487656320039605 VNNLEWKHT 9 Unmodified _VNNLEWKHT_ 0 0 0 REV__L1PB4_dup5243|chr11:33889665-33890210:+|3.557287573899103|0.0045632792902832|9.61|151.0|12|2|sense REV__L1PB4_dup5243|chr11:33889665-33890210:+|3.557287573899103|0.0045632792902832|9.61|151.0|12|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 570.7307739257812 2 570.793455 1139.57236 0.43492 0.00024825 0.12539 7.157E-05 0.5603 0.00031982 570.7931050943681 65.506 0.063011 68.685 68.659 68.722 3.1795 5 3 2 0 0 0 0.12354 1 15731 15731 3.5965 0 1 38938 + 50123 30601 31327 31344 57784 57784 0.008153597034606719 VNNLKVQL 8 Unmodified _VNNLKVQL_ 0 0 0 REV__ENSG00000130477|ENST00000519716|UNC13A REV__ENSG00000130477|ENST00000519716|UNC13A MULTI-MSMS UPN47_class_I_Rep_2 3 464.77667236328125 2 464.284734 926.554916 -0.071565 -3.3226E-05 -0.11711 -5.4371E-05 -0.18867 -8.7597E-05 464.284651329739 66.592 0.59559 69.85 69.54 70.136 3.2588 56 40 2 0 0 0 0.82752 1 16032 16032 16.942 0 1 109480 + 50124 18939 31328 31345 57785 57785 0.08870064168456793 VNNLKVQL 8 Unmodified _VNNLKVQL_ 0 0 0 REV__ENSG00000130477|ENST00000519716|UNC13A REV__ENSG00000130477|ENST00000519716|UNC13A MULTI-MATCH UPN47_class_I_Rep_1 2 2 464.284734 926.554916 0.055218 2.5637E-05 -0.33532 -0.00015568 -0.2801 -0.00013005 464.28452868020906 66.397 0.69408 69.754 69.398 70.092 3.3576 -0.12687 -8.1945E-05 NaN 16.942 58 45 2 NaN NaN NaN NaN 0 NaN NaN 0 76045 + 50125 18939 31328 31345 0.08870064168456793 VNNLKVQL 8 Unmodified _VNNLKVQL_ 0 0 0 REV__ENSG00000130477|ENST00000519716|UNC13A REV__ENSG00000130477|ENST00000519716|UNC13A MULTI-MATCH UPN47_class_I_Rep_3 4 2 464.284734 926.554916 -0.093798 -4.3549E-05 -0.24642 -0.00011441 -0.34022 -0.00015796 464.2846296380129 66.847 0.32658 70.039 69.872 70.198 3.1914 0.1576 6.0453E-07 NaN 16.942 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 54935 + 50126 18939 31328 31345 0.08870064168456793 VNNNYRDH 8 Unmodified _VNNNYRDH_ 0 0 0 REV__Tigger1_dup4775|chr6:37293377-37294196:+|1.1594318395931256|0.0707133586418973|4.04|151.0|51|2|anti-sense REV__Tigger1_dup4775|chr6:37293377-37294196:+|1.1594318395931256|0.0707133586418973|4.04|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.2267456054688 2 516.236304 1030.45806 NaN NaN NaN NaN NaN NaN NaN 66.285 1 69.543 69.043 70.043 3.2588 0 0 0 0.40643 1 15915 15915 2.0598 0 1 + 50127 32455 31329 31346 57786 57786 -0.055955300586447265 VNPGMAISGVL 11 Unmodified _VNPGMAISGVL_ 0 0 0 ENSG00000166959|ENST00000300226|MS4A8 ENSG00000166959|ENST00000300226|MS4A8 ENSG00000166959|ENST00000300226|MS4A8 MULTI-MSMS UPN47_class_I_Rep_2 3 529.2904663085938 2 529.289159 1056.56377 0.15022 7.9508E-05 0.6124 0.00032414 0.76262 0.00040365 529.2895494745144 64.674 0.84706 67.93 67.642 68.489 3.2556 81 66 2 0 0 0 0.26266 2 15438 15438;15488 19.362 3.5148 1 126540 50128 4279 31330 31347 57787;57788 57787 0.037746697426428 VNPGMAISGVL 11 Unmodified _VNPGMAISGVL_ 0 0 0 ENSG00000166959|ENST00000300226|MS4A8 ENSG00000166959|ENST00000300226|MS4A8 ENSG00000166959|ENST00000300226|MS4A8 MULTI-MSMS UPN47_class_I_Rep_3 4 529.289306640625 2 529.289159 1056.56377 0.36574 0.00019358 0.67923 0.00035951 1.045 0.00055309 529.2894057336955 64.709 0.37099 67.889 67.785 68.156 3.1795 60 30 3 0 0 0 0.30462 1 15496 15496 15.248 0.41021 1 150740 50129 4279 31330 31347 57789 57789 0.037746697426428 VNPIGGKQ 8 Unmodified _VNPIGGKQ_ 0 0 0 REV__ENST00000497356.1_1_3:52727208-52727346:+|nuORF REV__ENST00000497356.1_1_3:52727208-52727346:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.73480224609375 2 406.734877 811.455202 -0.49428 -0.00020104 0.60544 0.00024625 0.11116 4.5213E-05 406.73503251103045 23.907 0.67653 27.637 27.347 28.024 3.7298 84 54 2 0 0 0 0.82752 1 3010 3010 8.5933 0 1 95681 + 50130 20019 31331 31348 57790 57790 0.04193246554518737 VNPIGGKQ 8 Unmodified _VNPIGGKQ_ 0 0 0 REV__ENST00000497356.1_1_3:52727208-52727346:+|nuORF REV__ENST00000497356.1_1_3:52727208-52727346:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 406.734877 811.455202 -1.0002 -0.00040682 1.0355 0.00042116 0.035264 1.4343E-05 406.7352317550825 24.008 0.58415 27.473 27.26 27.845 3.4655 -0.081753 0.00020537 NaN 8.5933 87 48 2 NaN NaN NaN NaN 0 NaN NaN 0 95737 + 50131 20019 31331 31348 0.04193246554518737 VNPIVYAYR 9 Unmodified _VNPIVYAYR_ 0 0 0 ENST00000582124.1_1_17:15877924-15878653:+|nuORF;ENSG00000170425|ENST00000304222|ADORA2B ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF MSMS UPN47_class_I_Rep_3 4 547.8023681640625 2 547.803291 1093.59203 NaN NaN NaN NaN NaN NaN NaN 82.139 1 85.476 84.976 85.976 3.337 0 0 0 0.39518 1 20581 20581 1.8442 0 1 50132 4471 31332 31349 57791 57791 0.048977357142121036 VNPLGVPPGL 10 Unmodified _VNPLGVPPGL_ 0 0 0 Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|188|3|sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|188|3|sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|188|3|sense MSMS UPN47_class_I_Rep_2 3 481.7878723144531 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 114.12 1 117.63 117.13 118.13 3.5109 0 0 0 0.53105 1 27779 27779 1.6526 0 1 50133 7973 31333 31350 57792 57792 0.07734948311224343 VNPLGVPPGL 10 Unmodified _VNPLGVPPGL_ 0 0 0 Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|188|3|sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|188|3|sense Harlequin-int_dup214|chr6:2310864-2316711:-|10.538254227199268|0.090337565428755|6.87|151.0|188|3|sense MSMS UPN48_class_I_Rep_2 6 481.336669921875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 113.68 1 117.35 116.85 117.85 3.663 0 0 0 0.53105 1 27142 27142 0.40072 0 1 50134 7973 31333 31350 57793 57793 0.07734948311224343 VNPLKFHK 8 Unmodified _VNPLKFHK_ 0 0 0 REV__L1MEd_dup12484|chr9:125873217-125874468:+|1.8536988505861105|0.036442662038724|5.67|151.0|58|1|anti-sense REV__L1MEd_dup12484|chr9:125873217-125874468:+|1.8536988505861105|0.036442662038724|5.67|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_1 5 491.7957458496094 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 42.178 1 45.686 45.186 46.186 3.5079 0 0 0 0.40625 1 7770 7770 2.3027 0.24298 1 + 50135 28512 31334 31351 57794 57794 0.08446074267988024 VNPNSDEETE 10 Unmodified _VNPNSDEETE_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MSMS UPN48_class_I_Rep_2 6 567.2332763671875 2 567.23329 1132.45203 NaN NaN NaN NaN NaN NaN NaN 118.83 1 122.49 121.99 122.99 3.6652 0 0 0 0.53105 1 28500 28500 0 0 1 + 50136 18603 31335 31352 57795 57795 -0.10890137871479055 VNPNVTLPR 9 Unmodified _VNPNVTLPR_ 0 0 0 REV__L1M2_dup4355|chr8:22519957-22521096:-|1.101996599688288|0.1505695496322879|2.87|151.0|1|1|sense REV__L1M2_dup4355|chr8:22519957-22521096:-|1.101996599688288|0.1505695496322879|2.87|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 505.3116455078125 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 61.574 1 61.574 61.074 62.074 0 0 0 0 0.38784 1 13712 13712 3.5965 0 1 + 50137 24209 31336 31353 57796 57796 0.0676856505442629 VNPPSLIY 8 Unmodified _VNPPSLIY_ 0 0 0 REV__L1ME1_dup11438|chr6:38463096-38463637:-|1.2172491072372835|0.0227278286866058|5.74|151.0|14|3|sense REV__L1ME1_dup11438|chr6:38463096-38463637:-|1.2172491072372835|0.0227278286866058|5.74|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 451.7529602050781 2 451.752736 901.490919 NaN NaN NaN NaN NaN NaN NaN 62.456 1 62.456 61.956 62.956 0 0 0 0 0.40404 1 13963 13963 5.2307 0 1 + 50138 27579 31337 31354 57797 57797 0.0362328401151899 VNPQLTFF 8 Unmodified _VNPQLTFF_ 0 0 0 REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF MSMS UPN46_class_I_Rep_3 1 482.79583740234375 2 483.258185 964.501818 NaN NaN NaN NaN NaN NaN NaN 43.889 1 43.889 43.389 44.389 0 0 0 0 0.40604 1 8800 8800 2.5775 0 1 + 50139 18981 31338 31355 57798 57798 0.01814686385796449 VNPRKRLDHL 10 Unmodified _VNPRKRLDHL_ 0 0 0 ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C MULTI-MSMS UPN46_class_I_Rep_3 1 624.874267578125 2 624.370195 1246.72584 0.677 0.0004227 2.3489 0.0014666 3.0259 0.0018893 624.8733022509806 95.39 0.26437 95.39 95.157 95.422 0 41 24 2 0 0 0 0.56078 1 23159 23159 3.2813 0 1 6989900 50140 5800 31339 31356 57799 57799 0.11234394539792447 VNPRKRLDHL 10 Unmodified _VNPRKRLDHL_ 0 0 0 ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C MULTI-MSMS UPN46_class_I_Rep_3 1 624.8742065429688 2 624.370195 1246.72584 0.67673 0.00042253 2.3109 0.0014429 2.9877 0.0018654 624.3715270654181 95.542 0.30356 95.542 95.422 95.725 0 56 29 2 0 0 0 0.56078 1 23247 23247 3.2813 0 1 3336500 50141 5800 31339 31356 57800 57800 0.11234394539792447 VNPRKRLDHL 10 Unmodified _VNPRKRLDHL_ 0 0 0 ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C MSMS UPN47_class_I_Rep_1 2 624.3717651367188 2 624.370195 1246.72584 NaN NaN NaN NaN NaN NaN NaN 91.299 1 95.004 94.504 95.504 3.7053 0 0 0 0.53105 1 22791 22791 1.4819 0 1 50142 5800 31339 31356 57801 57801 0.11234394539792447 VNPRKRLDHL 10 Unmodified _VNPRKRLDHL_ 0 0 0 ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C MSMS UPN47_class_I_Rep_2 3 624.3721313476562 2 624.370195 1246.72584 NaN NaN NaN NaN NaN NaN NaN 91.367 1 94.829 94.329 95.329 3.4613 0 0 0 0.53105 1 22621 22621 1.4819 0 1 50143 5800 31339 31356 57802 57802 0.11234394539792447 VNPRKRLDHL 10 Unmodified _VNPRKRLDHL_ 0 0 0 ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C ENSG00000266826|ENST00000583666|IGBP1C MSMS UPN48_class_I_Rep_3 7 624.3731689453125 2 624.370195 1246.72584 NaN NaN NaN NaN NaN NaN NaN 91.715 1 95.579 95.079 96.079 3.8634 0 0 0 0.53105 1 21752 21752 3.2813 0 1 50144 5800 31339 31356 57803 57803 0.11234394539792447 VNPSLNNTY 9 Unmodified _VNPSLNNTY_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;nc|ENSG00000213614|P06865-2|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-SECPEP UPN47_class_I_Rep_3 4 510.7900695800781 2 511.251089 1020.48762 -0.27274 -0.00013944 0.35266 0.0001803 0.079922 4.086E-05 511.25128562090435 35.813 0.61742 39.068 38.848 39.466 3.2547 65 40 2 0 0 0 0.12281 1 6800 6800 4.3292 1.7518 1 72657 50145 5596 31340 31357 57804 57804 -0.02180010833160395 VNQHHQPEDH 10 Unmodified _VNQHHQPEDH_ 0 0 0 Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|136|3|sense Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|136|3|sense Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|136|3|sense MSMS UPN47_class_I_Rep_2 3 620.7781372070312 2 620.776325 1239.5381 NaN NaN NaN NaN NaN NaN NaN 47.328 1 50.679 50.179 51.179 3.3509 0 0 0 0.53105 1 10151 10151 5.7319 0.43497 1 50146 7989 31341 31358 57805 57805 -0.07209088455442725 VNRNNMNNY 9 Unmodified _VNRNNMNNY_ 0 0 0 REV__ENSG00000135655|ENST00000280377|USP15 REV__ENSG00000135655|ENST00000280377|USP15 MSMS UPN47_class_I_Rep_1 2 569.7574462890625 2 569.756546 1137.49854 NaN NaN NaN NaN NaN NaN NaN 71.947 1 75.322 74.822 75.822 3.3751 0 0 0 0.39518 1 17573 17573 1.8442 0 1 + 50147 19149 31342 31359 57806 57806 -0.06470931730518714 VNRTTRTN 8 Unmodified _VNRTTRTN_ 0 0 0 ENST00000443167.1_1_13:19239519-19239999:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A ENST00000443167.1_1_13:19239519-19239999:+|nuORF ENST00000443167.1_1_13:19239519-19239999:+|nuORF MSMS UPN48_class_I_Rep_1 5 481.26104736328125 2 481.262322 960.510091 NaN NaN NaN NaN NaN NaN NaN 67.924 1 71.376 70.876 71.876 3.4517 0 0 0 0.40738 1 15649 15649 0.79363 0 1 50148 3236 31343 31360 57807 57807 0.02825633355132595 VNSEHTFLW 9 Unmodified _VNSEHTFLW_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MSMS UPN47_class_I_Rep_3 4 566.7750854492188 2 566.774731 1131.53491 NaN NaN NaN NaN NaN NaN NaN 37.61 1 40.851 40.351 41.351 3.2414 0 0 0 0.39428 1 7231 7231 2.0598 0 1 50149 5779 31344 31361 57808 57808 -0.025597315621553207 VNSIDAEKAF 10 Unmodified _VNSIDAEKAF_ 0 0 0 L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|134|3|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|134|3|sense L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|134|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.2810668945312 2 547.279846 1092.54514 -0.057357 -3.139E-05 0.16951 9.2769E-05 0.11215 6.1378E-05 547.279873314281 20.546 0.7223 24.19 23.842 24.564 3.6436 133 75 2 0 0 0 0.56374 1 2145 2145 1.1933 0 1 94780 50150 14156 31345 31362 57809 57809 0.002568313724395921 VNSIKHVRM 9 Unmodified _VNSIKHVRM_ 0 0 0 REV__nc|ENSG00000072110|P12814-2|ACTN1 REV__nc|ENSG00000072110|P12814-2|ACTN1 MSMS UPN47_class_I_Rep_1 2 542.7774658203125 2 542.308218 1082.60188 NaN NaN NaN NaN NaN NaN NaN 71.49 1 74.866 74.366 75.366 3.3751 0 0 0 0.39428 1 17434 17434 2.0598 0 1 + 50151 17821 31346 31363 57810 57810 0.06388600447962745 VNSQIALEYG 10 Unmodified _VNSQIALEYG_ 0 0 0 ENST00000493672.1_1_16:103905-105855:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25 ENST00000493672.1_1_16:103905-105855:+|nuORF ENST00000493672.1_1_16:103905-105855:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 547.2799072265625 2 547.279846 1092.54514 -0.33216 -0.00018178 0.34858 0.00019077 0.016424 8.9887E-06 547.2800573897256 20.961 0.83692 24.311 24.039 24.875 3.3496 115 74 2 0 0 0 0.56189 1 2320 2320 2.4985 0.43874 1 73537 50152 3912 31347 31364 57811 57811 0.002568313724168547 VNTIGKELL 9 Unmodified _VNTIGKELL_ 0 0 0 REV__L1MC4_dup10862|chr7:96702095-96702613:+|1.3622020739965253|0.2001821924966004|2.77|151.0|9|3|sense REV__L1MC4_dup10862|chr7:96702095-96702613:+|1.3622020739965253|0.2001821924966004|2.77|151.0|9|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 493.2944030761719 2 493.797675 985.580796 0.31131 0.00015373 -3.4068 -0.0016823 -3.0955 -0.0015285 493.79686837698995 60.599 0.12844 63.864 63.792 63.92 3.2654 17 13 2 0 0 0 0.1249 1 14177 14177 1.4819 0 1 58841 + 50153 26800 31348 31365 57812 57812 0.08742913620085346 VNTRRHRRV 9 Unmodified _VNTRRHRRV_ 0 0 0 HAL1_dup19232|chr15:72500595-72500907:+|1.2411167367909557|0.0259540683306757|5.58|151.0|3|1|sense HAL1_dup19232|chr15:72500595-72500907:+|1.2411167367909557|0.0259540683306757|5.58|151.0|3|1|sense HAL1_dup19232|chr15:72500595-72500907:+|1.2411167367909557|0.0259540683306757|5.58|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 597.3572387695312 2 597.357954 1192.70135 NaN NaN NaN NaN NaN NaN NaN 84.562 1 87.923 87.423 88.423 3.3615 0 0 0 0.4007 1 21227 21227 0.52476 0 1 50154 7855 31349 31366 57813 57813 0.11271179176901569 VNTRRHRRV 9 Unmodified _VNTRRHRRV_ 0 0 0 HAL1_dup19232|chr15:72500595-72500907:+|1.2411167367909557|0.0259540683306757|5.58|151.0|3|1|sense HAL1_dup19232|chr15:72500595-72500907:+|1.2411167367909557|0.0259540683306757|5.58|151.0|3|1|sense HAL1_dup19232|chr15:72500595-72500907:+|1.2411167367909557|0.0259540683306757|5.58|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 597.3569946289062 2 597.357954 1192.70135 NaN NaN NaN NaN NaN NaN NaN 83.503 1 87.231 86.731 87.731 3.7281 0 0 0 0.4007 1 19797 19797 0.52476 0 1 50155 7855 31349 31366 57814 57814 0.11271179176901569 VNTRVQIPLQ 10 Unmodified _VNTRVQIPLQ_ 0 0 0 L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|30|1|anti-sense L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|30|1|anti-sense L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|30|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3478393554688 2 584.345855 1166.67716 NaN NaN NaN NaN NaN NaN NaN 38.816 1 38.816 38.316 39.316 0 0 0 0 0.53105 1 7418 7418 1.3295 0 1 50156 10417 31350 31367 57815 57815 0.10048481180024282 VNTWIWVHL 9 Unmodified _VNTWIWVHL_ 0 0 0 REV__L1MC1_dup1462|chr2:97237165-97237742:-|2.0042800825219707|0.4391599071492733|2.19|149.0|31|2|anti-sense REV__L1MC1_dup1462|chr2:97237165-97237742:-|2.0042800825219707|0.4391599071492733|2.19|149.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 583.919189453125 2 584.319109 1166.62366 NaN NaN NaN NaN NaN NaN NaN 102.39 1 106.18 105.68 106.68 3.7888 0 0 0 0.40038 1 25205 25205 0.6015 0 1 + 50157 26528 31351 31368 57816 57816 0.04701728468194233 VNVDEVGGEAL 11 Unmodified _VNVDEVGGEAL_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_3 7 551.2742309570312 2 551.274761 1100.53497 NaN NaN NaN NaN NaN NaN NaN 54.464 1 58.034 57.534 58.534 3.5694 0 0 0 0.10897 1 11453 11453 21.799 6.8423 1 + 50158 5729 31352 31369 57817 57817 -0.01127776352791443 VNVKDLRN 8 Unmodified _VNVKDLRN_ 0 0 0 REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|56|1|sense REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|56|1|sense MSMS UPN48_class_I_Rep_1 5 479.277099609375 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 73.985 1 77.467 76.967 77.967 3.4812 0 0 0 0.40746 1 17466 17466 0.69038 0 1 + 50159 30169 31353 31370 57818 57818 0.06031992020314192 VNVKRKVQ 8 Unmodified _VNVKRKVQ_ 0 0 0 REV__LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|79|3|anti-sense REV__LTR49-int_dup1339|chr10:48378924-48379961:-|1.5208230256978457|0.0196856186975139|6.27|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_1 2 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.564 1 75.944 75.444 76.444 3.3799 0 0 0 0.40746 1 17764 17764 0.69038 0 1 + 50160 30945 31354 31371 57819 57819 0.12232861670997863 VNVLKRHFPR 10 Unmodified _VNVLKRHFPR_ 0 0 0 REV__L1M4a2_dup477|chr4:77902406-77903959:+|2.7115677293692717|0.2044542088011733|3.73|151.0|19|1|sense REV__L1M4a2_dup477|chr4:77902406-77903959:+|2.7115677293692717|0.2044542088011733|3.73|151.0|19|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 633.3853759765625 2 633.383106 1264.75166 0.2897 0.00018349 3.6994 0.0023431 3.9891 0.0025266 633.3853670838956 46.834 0.045788 50.186 50.155 50.201 3.3515 5 3 2 0 0 0 0.56444 1 10005 10005 0.40072 0.093686 1 101020 + 50161 24517 31355 31372 57820 57820 0.12987288782073847 VNVLQQVVL 9 Unmodified _VNVLQQVVL_ 0 0 0 REV__ENSG00000158158|ENST00000377075|CNNM4 REV__ENSG00000158158|ENST00000377075|CNNM4 MULTI-MSMS UPN48_class_I_Rep_1 5 506.31353759765625 2 506.313492 1010.61243 0.34795 0.00017617 -0.74632 -0.00037787 -0.39837 -0.0002017 506.3129208713352 58.944 0.54036 62.431 62.219 62.759 3.487 50 34 2 0 0 0 0.33654 2 12920 12920;12970 11.64 0 1 156360 + 50162 19836 31356 31373 57821;57822 57821 0.1075490637402936 VNVLSVSYL 9 Unmodified _VNVLSVSYL_ 0 0 0 REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|150|3|anti-sense REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|150|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.28472900390625 2 497.2844 992.554247 -0.15303 -7.6099E-05 0.36661 0.00018231 0.21358 0.00010621 497.2845755410013 29.08 0.80042 32.572 32.165 32.966 3.4923 98 64 2 0 0 0 0.26948 1 4624 4624 15.847 1.0089 1 124840 + 50163 25220 31357 31374 57823 57823 0.05767224728754172 VNVLSVSYL 9 Unmodified _VNVLSVSYL_ 0 0 0 REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|150|3|anti-sense REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|150|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 497.2844 992.554247 -0.28576 -0.00014211 0.32468 0.00016146 0.03892 1.9354E-05 497.28452417293914 28.771 0.755 32.537 32.31 33.065 3.7662 -0.043405 -9.7478E-05 NaN 15.847 104 66 2 NaN NaN NaN NaN 0 NaN NaN 0 138620 + 50164 25220 31357 31374 0.05767224728754172 VNVLSVSYL 9 Unmodified _VNVLSVSYL_ 0 0 0 REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|150|3|anti-sense REV__L1MA4_dup8736|chr15:58617489-58619613:+|1.861541085983596|0.0470812853886203|5.31|151.0|150|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 497.2844 992.554247 -0.15303 -7.6099E-05 0.36661 0.00018231 0.21358 0.00010621 497.2845755410013 29.08 0.80042 32.572 32.165 32.966 3.4923 -0.0082324 -5.5777E-05 NaN 15.847 98 64 2 NaN NaN NaN NaN 0 NaN NaN 0 124840 + 50165 25220 31357 31374 0.05767224728754172 VNVNLLIY 8 Unmodified _VNVNLLIY_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000508410.1_1_5:75997642-76003135:+|nuORF ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MSMS UPN46_class_I_Rep_3 1 474.2821960449219 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 32.214 1 32.214 31.714 32.714 0 0 0 0 0.40404 1 5483 5483 5.2307 0 1 50166 3407 31358 31375 57824 57824 0.07335545936950894 VNVPILLI 8 Unmodified _VNVPILLI_ 0 0 0 L1MC2_dup4359|chr11:117060615-117060964:+|3.936072873198957|0.0094865347097656|8.7|151.0|10|2|sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79913330078125 2 440.796946 879.57934 -0.40205 -0.00017722 2.5543 0.0011259 2.1523 0.00094871 440.7995227526891 31.101 1.2195 34.83 34.117 35.337 3.7293 145 98 2 0 0 0 0.82752 1 5306 5306 0.69038 0 1 87089 50167 11257 31359 31376 57825 57825 0.1347332432201256 VNVPILLI 8 Unmodified _VNVPILLI_ 0 0 0 L1MC2_dup4359|chr11:117060615-117060964:+|3.936072873198957|0.0094865347097656|8.7|151.0|10|2|sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7992248535156 2 440.796946 879.57934 -0.39255 -0.00017304 3.4787 0.0015334 3.0861 0.0013604 440.79954704253936 33.376 0.92241 37.074 36.639 37.562 3.6983 88 61 2 0 0 0 0.82752 1 5904 5904 2.5775 0 1 112320 50168 11257 31359 31376 57826 57826 0.1347332432201256 VNVPILLI 8 Unmodified _VNVPILLI_ 0 0 0 L1MC2_dup4359|chr11:117060615-117060964:+|3.936072873198957|0.0094865347097656|8.7|151.0|10|2|sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7994384765625 2 440.796946 879.57934 -0.68126 -0.0003003 2.8953 0.0012762 2.2141 0.00097595 440.799409752735 34.501 0.80898 37.926 37.328 38.137 3.4253 100 55 2 0 0 0 0.82752 3 6090 6090;6192;6233 2.5775 0 1 82889 50169 11257 31359 31376 57827;57828;57829 57827 0.1347332432201256 VNVPILLI 8 Unmodified _VNVPILLI_ 0 0 0 L1MC2_dup4359|chr11:117060615-117060964:+|3.936072873198957|0.0094865347097656|8.7|151.0|10|2|sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79925537109375 2 440.796946 879.57934 -0.91583 -0.00040369 3.0926 0.0013632 2.1768 0.00095951 440.79984177228175 33.684 0.68873 36.959 36.545 37.234 3.2748 78 50 2 0 0 0 0.82752 1 6081 6081 5.2307 0 1 86763 50170 11257 31359 31376 57830 57830 0.1347332432201256 VNVPILLI 8 Unmodified _VNVPILLI_ 0 0 0 L1MC2_dup4359|chr11:117060615-117060964:+|3.936072873198957|0.0094865347097656|8.7|151.0|10|2|sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense REV__L1MEf_dup4763|chr7:2751414-2752721:+|1.1421022498971467|0.0696251412958087|4.04|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.799560546875 2 440.796946 879.57934 -0.28125 -0.00012397 3.2317 0.0014245 2.9505 0.0013006 440.79960231489775 112.29 0.47547 115.81 115.72 116.19 3.5207 124 63 2 0 0 0 0.82752 1 27560 27560 0.79363 0 1 114040 50171 11257 31359 31376 57831 57831 0.1347332432201256 VNVPPPKE 8 Unmodified _VNVPPPKE_ 0 0 0 REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF MSMS UPN47_class_I_Rep_2 3 440.2484436035156 2 440.25036 878.486168 NaN NaN NaN NaN NaN NaN NaN 34.421 1 37.846 37.346 38.346 3.4253 0 0 0 0.40404 1 6224 6224 5.2307 0 1 + 50172 17688 31360 31377 57832 57832 0.04206399868758126 VNVQLQRG 8 Unmodified _VNVQLQRG_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 MULTI-MSMS UPN47_class_I_Rep_2 3 457.26446533203125 2 457.264333 912.514114 -0.088759 -4.0586E-05 0.054453 2.4899E-05 -0.034306 -1.5687E-05 457.26428556768695 72.86 2.1203 76.157 75.317 77.438 3.2971 352 194 2 0 0 0 0.82752 1 17728 17728 0.69038 0 1 317760 50173 3991 31361 31378 57833 57833 0.05435722848869773 VNVRVHVF 8 Unmodified _VNVRVHVF_ 0 0 0 L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.2860107421875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 39.095 1 42.825 42.325 43.325 3.7297 0 0 0 0.40581 1 6896 6896 2.8892 0 1 50174 14787 31362 31379 57834 57834 0.07004903608185487 VNVRVHVF 8 Unmodified _VNVRVHVF_ 0 0 0 L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.2848205566406 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 42.824 1 46.582 46.082 47.082 3.7579 0 0 0 0.40581 1 7974 7974 2.8892 0 1 50175 14787 31362 31379 57835 57835 0.07004903608185487 VNVRVHVF 8 Unmodified _VNVRVHVF_ 0 0 0 L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense L1PA7_dup2491|chr3:120003777-120009853:+|2.090166956310441|0.074565902301254|4.81|151.0|249|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.286376953125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 57.769 1 61.284 60.784 61.784 3.5142 0 0 0 0.40604 1 12522 12522 2.5775 0 1 50176 14787 31362 31379 57836 57836 0.07004903608185487 VNVRVRIS 8 Unmodified _VNVRVRIS_ 0 0 0 L1MEd_dup16595|chr12:132070488-132071176:-|2.10836909266238|0.2637602488994472|3.0|151.0|54|3|anti-sense L1MEd_dup16595|chr12:132070488-132071176:-|2.10836909266238|0.2637602488994472|3.0|151.0|54|3|anti-sense L1MEd_dup16595|chr12:132070488-132071176:-|2.10836909266238|0.2637602488994472|3.0|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7950744628906 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 67.784 1 71.047 70.547 71.547 3.2636 0 0 0 0.40643 1 16367 16367 2.0598 0 1 50177 13182 31363 31380 57837 57837 0.10392288636899139 VNVVRKQG 8 Unmodified _VNVVRKQG_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.27484130859375 2 450.274701 898.534849 -0.025718 -1.158E-05 1.7728 0.00079827 1.7471 0.00078669 450.2756474625575 87.98 0.11946 91.427 91.383 91.502 3.4471 15 13 2 0 0 0 0.82752 1 21880 21880 0.79363 0 1 68521 + 50178 18052 31364 31381 57838 57838 0.08152313228526964 VNVVRKQG 8 Unmodified _VNVVRKQG_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 450.274701 898.534849 0.18565 8.3595E-05 0.29312 0.00013198 0.47877 0.00021558 450.27519064688875 91.125 0.045761 91.125 91.083 91.129 0 -0.20918 -0.001066 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 16693 + 50179 18052 31364 31381 0.08152313228526964 VNVVRKQG 8 Unmodified _VNVVRKQG_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 450.274701 898.534849 -0.19385 -8.7287E-05 1.5773 0.00071022 1.3835 0.00062294 450.2758089265074 88.063 0.12376 91.45 91.388 91.512 3.3873 0.11607 9.0518E-05 NaN 0.79363 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 77956 + 50180 18052 31364 31381 0.08152313228526964 VNVVVPQPL 9 Unmodified _VNVVVPQPL_ 0 0 0 REV__HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|43|1|sense REV__HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|43|1|sense MSMS UPN46_class_I_Rep_3 1 482.7955322265625 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 28.536 1 28.536 28.036 29.036 0 0 0 0 0.35339 1 4395 4395 7.9102 0 1 + 50181 23761 31365 31382 57839 57839 0.09207234828284072 VNVVVPQPL 9 Unmodified _VNVVVPQPL_ 0 0 0 REV__HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|43|1|sense REV__HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|43|1|sense MSMS UPN47_class_I_Rep_1 2 482.7953796386719 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 112.97 1 116.54 116.04 117.04 3.572 0 0 0 0.35339 1 27862 27862 7.9102 0 1 + 50182 23761 31365 31382 57840 57840 0.09207234828284072 VNVWQRFY 8 Unmodified _VNVWQRFY_ 0 0 0 REV__L1ME1_dup12111|chr6:111449095-111450199:+|1.1058097007017769|0.0228255470015319|5.6|151.0|60|1|anti-sense REV__L1ME1_dup12111|chr6:111449095-111450199:+|1.1058097007017769|0.0228255470015319|5.6|151.0|60|1|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2894897460938 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 79.3 1 82.746 82.246 83.246 3.4456 0 0 0 0.40581 1 19754 19754 2.8892 0 1 + 50183 27585 31366 31383 57841 57841 0.010205823999967834 VNVWRNVI 8 Unmodified _VNVWRNVI_ 0 0 0 REV__L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|4|1|sense REV__L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 500.289794921875 2 500.290351 998.566149 NaN NaN NaN NaN NaN NaN NaN 81.631 1 85.143 84.643 85.643 3.5122 0 0 0 0.4044 1 20375 20375 4.756 0 1 + 50184 24525 31367 31384 57842 57842 0.06680886262597596 VNWDLGQYY 9 Unmodified _VNWDLGQYY_ 0 0 0 REV__MER31-int_dup1059|chr22:19944852-19945661:-|4.1330395837925336|0.2621392013107492|3.98|151.0|4|1|sense REV__MER31-int_dup1059|chr22:19944852-19945661:-|4.1330395837925336|0.2621392013107492|3.98|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.2672119140625 2 579.266739 1156.51892 0.31791 0.00018416 -0.47138 -0.00027306 -0.15347 -8.8902E-05 579.2665139317919 54.241 0.74242 57.742 57.531 58.273 3.5014 48 37 2 0 0 0 0.20276 1 12269 12269 20.454 0 1 99353 + 50185 31254 31368 31385 57843 57843 -0.05307437799046966 VNWFILII 8 Unmodified _VNWFILII_ 0 0 0 REV__L1M1_dup317|chr1:113720148-113720592:+|1.2914463070322515|0.0637200900732277|4.34|151.0|22|2|anti-sense REV__L1M1_dup317|chr1:113720148-113720592:+|1.2914463070322515|0.0637200900732277|4.34|151.0|22|2|anti-sense MSMS UPN46_class_I_Rep_3 1 509.3105163574219 2 509.310221 1016.60589 NaN NaN NaN NaN NaN NaN NaN 20.227 1 20.227 19.727 20.727 0 0 0 0 0.40738 1 2066 2066 0.79363 0 1 + 50186 24073 31369 31386 57844 57844 0.09825013213344391 VNYEIFPL 8 Unmodified _VNYEIFPL_ 0 0 0 L1MEc_dup15705|chr15:57149968-57150815:+|1.427871305388097|0.0144614541582283|6.63|151.0|51|2|anti-sense L1MEc_dup15705|chr15:57149968-57150815:+|1.427871305388097|0.0144614541582283|6.63|151.0|51|2|anti-sense L1MEc_dup15705|chr15:57149968-57150815:+|1.427871305388097|0.0144614541582283|6.63|151.0|51|2|anti-sense MSMS UPN47_class_I_Rep_1 2 497.7658386230469 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.87 114.37 115.37 3.572 0 0 0 0.40738 1 27450 27450 0.79363 0 1 50187 13037 31370 31387 57845 57845 0.02011553182978787 VNYEIFPL 8 Unmodified _VNYEIFPL_ 0 0 0 L1MEc_dup15705|chr15:57149968-57150815:+|1.427871305388097|0.0144614541582283|6.63|151.0|51|2|anti-sense L1MEc_dup15705|chr15:57149968-57150815:+|1.427871305388097|0.0144614541582283|6.63|151.0|51|2|anti-sense L1MEc_dup15705|chr15:57149968-57150815:+|1.427871305388097|0.0144614541582283|6.63|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_2 6 497.7643127441406 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 112.36 1 116.03 115.53 116.53 3.6648 0 0 0 0.40738 1 26768 26768 0.79363 0 1 50188 13037 31370 31387 57846 57846 0.02011553182978787 VNYKGNPIKL 10 Unmodified _VNYKGNPIKL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.8404541015625 2 573.337498 1144.66044 0.42244 0.0002422 0.212 0.00012154 0.63443 0.00036374 573.3375420863744 41.314 0.61952 44.82 44.416 45.036 3.506 62 53 2 0 0 0 0.54822 2 7473 7434;7473 5.7319 0 1 135680 50189 15324 31371 31388 57847;57848 57848 0.0938998029407685 VNYKGNPIKL 10 Unmodified _VNYKGNPIKL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense MSMS UPN48_class_I_Rep_1 5 573.32470703125 2 573.337498 1144.66044 NaN NaN NaN NaN NaN NaN NaN 41.56 1 45.066 44.566 45.566 3.506 0 0 0 0.53105 1 7590 7590 3.2813 0 1 50190 15324 31371 31388 57849 57849 0.0938998029407685 VNYKGNPIKL 10 Unmodified _VNYKGNPIKL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 573.3377075195312 2 573.337498 1144.66044 0.4258 0.00024413 -0.11766 -6.7457E-05 0.30815 0.00017667 573.3374124539421 40.847 0.58568 44.598 44.332 44.917 3.7508 80 57 3 0 0 0 0.54822 1 7350 7350 5.7319 0 1 163530 50191 15324 31371 31388 57850 57850 0.0938998029407685 VNYKGNPIKL 10 Unmodified _VNYKGNPIKL_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|26|1|sense MSMS UPN48_class_I_Rep_2 6 573.33837890625 2 573.337498 1144.66044 NaN NaN NaN NaN NaN NaN NaN 41.179 1 44.93 44.43 45.43 3.7508 0 0 0 0.53105 1 7496 7496 5.7319 0 1 50192 15324 31371 31388 57851 57851 0.0938998029407685 VNYLRKYT 8 Unmodified _VNYLRKYT_ 0 0 0 REV__L1ME1_dup853|chr1:77705743-77706287:-|2.323764680291881|0.3953848419134361|2.56|151.0|17|3|sense REV__L1ME1_dup853|chr1:77705743-77706287:-|2.323764680291881|0.3953848419134361|2.56|151.0|17|3|sense MSMS UPN47_class_I_Rep_1 2 528.7937622070312 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 31.239 1 34.968 34.468 35.468 3.7293 0 0 0 0.40643 1 5214 5214 2.0598 0 1 + 50193 27806 31372 31389 57852 57852 0.050814491971550524 VNYTQIVY 8 Unmodified _VNYTQIVY_ 0 0 0 ENSG00000144362|ENST00000359744|PHOSPHO2 ENSG00000144362|ENST00000359744|PHOSPHO2 ENSG00000144362|ENST00000359744|PHOSPHO2 MSMS UPN48_class_I_Rep_1 5 500.2721252441406 2 500.260925 998.507297 NaN NaN NaN NaN NaN NaN NaN 29.752 1 33.302 32.802 33.802 3.5499 0 0 0 0.40659 1 4180 4180 1.8442 0 1 50194 3349 31373 31390 57853 57853 0.007983651776157785 VPAAYVKK 8 Unmodified _VPAAYVKK_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS UPN48_class_I_Rep_1 5 438.27197265625 2 438.271096 874.527639 NaN NaN NaN NaN NaN NaN NaN 100.77 1 104.38 103.88 104.88 3.6084 0 0 0 0.40625 1 24334 24334 2.3027 0.4585 1 50195 5383 31374 31391 57854 57854 0.08535580628085881 VPACNCLWWQ 10 Unmodified _VPACNCLWWQ_ 0 0 0 L1ME2z_dup1099|chr3:11354723-11355069:+|1.8988544899457744|0.1203638280894835|3.98|151.0|21|1|anti-sense L1ME2z_dup1099|chr3:11354723-11355069:+|1.8988544899457744|0.1203638280894835|3.98|151.0|21|1|anti-sense L1ME2z_dup1099|chr3:11354723-11355069:+|1.8988544899457744|0.1203638280894835|3.98|151.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 407.1840515136719 3 407.184416 1218.53142 -1.3926 -0.00056704 0.12039 4.9023E-05 -1.2722 -0.00051802 407.18460304430977 23.96 1.2325 27.311 26.82 28.053 3.3509 224 100 3 0 0 0 0.56072 2 3098 3098;3254 3.3196 0.82116 1 256120 50196 12540 31375 31392 57855;57856 57855 -0.06910440932028905 VPAHKRKA 8 Unmodified _VPAHKRKA_ 0 0 0 MLT1G3_dup2339|chr16:85567278-85567723:-|1.0146292286068217|0.0162625779192811|5.96|151.0|17|1|anti-sense MLT1G3_dup2339|chr16:85567278-85567723:-|1.0146292286068217|0.0162625779192811|5.96|151.0|17|1|anti-sense MLT1G3_dup2339|chr16:85567278-85567723:-|1.0146292286068217|0.0162625779192811|5.96|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 453.7847900390625 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 45.208 1 48.452 47.952 48.952 3.2441 0 0 0 0.40738 1 9556 9556 0.79363 0 1 50197 16421 31376 31393 57857 57857 0.09936323328031449 VPAHKRKA 8 Unmodified _VPAHKRKA_ 0 0 0 MLT1G3_dup2339|chr16:85567278-85567723:-|1.0146292286068217|0.0162625779192811|5.96|151.0|17|1|anti-sense MLT1G3_dup2339|chr16:85567278-85567723:-|1.0146292286068217|0.0162625779192811|5.96|151.0|17|1|anti-sense MLT1G3_dup2339|chr16:85567278-85567723:-|1.0146292286068217|0.0162625779192811|5.96|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_1 5 453.7850036621094 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 67.863 1 71.315 70.815 71.815 3.4517 0 0 0 0.40738 1 15630 15630 0.79363 0 1 50198 16421 31376 31393 57858 57858 0.09936323328031449 VPAIAFIVK 9 Unmodified _VPAIAFIVK_ 0 0 0 L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|34|3|anti-sense L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|34|3|anti-sense L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|34|3|anti-sense MSMS UPN48_class_I_Rep_3 7 478.9739990234375 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 41.516 1 45.161 44.661 45.661 3.6458 0 0 0 0.39326 1 7508 7508 2.3027 0 1 50199 11478 31377 31394 57859 57859 0.12585013213322327 VPAKLHLNR 9 Unmodified _VPAKLHLNR_ 0 0 0 REV__MER61-int_dup352|chr4:143429404-143432009:-|1.882899677908966|0.2799642110682148|2.75|151.0|140|2|anti-sense REV__MER61-int_dup352|chr4:143429404-143432009:-|1.882899677908966|0.2799642110682148|2.75|151.0|140|2|anti-sense MSMS UPN48_class_I_Rep_2 6 524.7931518554688 2 524.324725 1046.6349 NaN NaN NaN NaN NaN NaN NaN 37.572 1 41.288 40.788 41.788 3.7164 0 0 0 0.39326 1 6443 6443 2.3027 0.4585 1 + 50200 31497 31378 31395 57860 57860 0.11344550562330369 VPALEEWQVS 10 Unmodified _VPALEEWQVS_ 0 0 0 ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B MSMS UPN48_class_I_Rep_2 6 579.349365234375 2 579.295496 1156.57644 NaN NaN NaN NaN NaN NaN NaN 43.202 1 46.964 46.464 47.464 3.7617 0 0 0 0.53105 1 8091 8091 1.3295 0.13619 1 50201 5743 31379 31396 57861 57861 0.004414044065242706 VPALHRIK 8 Unmodified _VPALHRIK_ 0 0 0 REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 467.30133056640625 2 467.303262 932.59197 0.2238 0.00010458 -3.8998 -0.0018224 -3.676 -0.0017178 467.3017763918464 84.307 0.077431 88.035 87.999 88.077 3.7281 14 10 2 0 0 0 0.82752 1 20007 20007 2.5775 0 1 291150 + 50202 26863 31380 31397 57862 57862 0.12297780504877664 VPALHRIK 8 Unmodified _VPALHRIK_ 0 0 0 REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 467.303262 932.59197 0.23205 0.00010844 -4.8875 -0.0022839 -4.6554 -0.0021755 467.3009087222957 87.739 0.20607 87.739 87.679 87.885 0 -0.06896 -0.00032825 NaN 2.5775 36 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1319200 + 50203 26863 31380 31397 0.12297780504877664 VPALHRIK 8 Unmodified _VPALHRIK_ 0 0 0 REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 467.303262 932.59197 0.085958 4.0168E-05 -4.1325 -0.0019311 -4.0466 -0.001891 467.3013722314687 84.052 0.30161 87.649 87.636 87.937 3.5973 -0.15846 0.00037731 NaN 2.5775 69 37 3 NaN NaN NaN NaN 0 NaN NaN 0 545690 + 50204 26863 31380 31397 0.12297780504877664 VPALHRIK 8 Unmodified _VPALHRIK_ 0 0 0 REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense REV__L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 467.303262 932.59197 0.2238 0.00010458 -3.8998 -0.0018224 -3.676 -0.0017178 467.3017763918464 84.307 0.077431 88.035 87.999 88.077 3.7281 0.22742 0.00059481 NaN 2.5775 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 291150 + 50205 26863 31380 31397 0.12297780504877664 VPALNAPPPL 10 Unmodified _VPALNAPPPL_ 0 0 0 REV__ENST00000553539.1_1_14:75469693-75469915:+|nuORF REV__ENST00000553539.1_1_14:75469693-75469915:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 494.7949523925781 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.54822 1 7225 7225 5.7319 0.97584 1 289630 + 50206 22976 31381 31398 57863 57863 0.08103234828263339 VPALNETK 8 Unmodified _VPALNETK_ 0 0 0 REV__nc|ENSG00000149557|Q99689-2|FEZ1 REV__nc|ENSG00000149557|Q99689-2|FEZ1 MULTI-MSMS UPN47_class_I_Rep_1 2 436.2480773925781 2 436.247818 870.481082 -0.42969 -0.00018745 0.052963 2.3105E-05 -0.37673 -0.00016435 436.24777222003354 26.639 0.46252 30.401 30.194 30.656 3.7624 64 39 2 0 0 0 0.82752 1 3883 3883 0.79363 0 1 76220 + 50207 19619 31382 31399 57864 57864 0.040660960061472906 VPALNETK 8 Unmodified _VPALNETK_ 0 0 0 REV__nc|ENSG00000149557|Q99689-2|FEZ1 REV__nc|ENSG00000149557|Q99689-2|FEZ1 MULTI-MSMS UPN47_class_I_Rep_2 3 436.2482604980469 2 436.247818 870.481082 -0.74715 -0.00032594 0.51705 0.00022556 -0.23011 -0.00010038 436.24791864264927 26.827 0.56654 30.326 30.045 30.611 3.4986 82 55 2 0 0 0 0.82752 1 3924 3924 0.79363 0 1 76797 + 50208 19619 31382 31399 57865 57865 0.040660960061472906 VPAMFFLVR 9 Unmodified _VPAMFFLVR_ 0 0 0 REV__ENST00000275732.5_1_7:100285918-100285987:-|nuORF REV__ENST00000275732.5_1_7:100285918-100285987:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 539.7980346679688 2 540.307155 1078.59976 0.46743 0.00025256 2.381 0.0012865 2.8485 0.001539 540.3085070588066 46.663 0.19707 50.299 50.216 50.413 3.6363 16 11 2 0 0 0 0.12281 1 9095 9095 4.3292 0.38484 1 67966 + 50209 21615 31383 31400 57866 57866 0.06360171710161922 VPAPVCPLVEF 11 Unmodified _VPAPVCPLVEF_ 0 0 0 L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|164|2|anti-sense L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|164|2|anti-sense L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 585.8162841796875 2 585.81501 1169.61547 NaN NaN NaN NaN NaN NaN NaN 98.524 1 98.524 98.024 99.024 0 0 0 0 0.38417 1 23987 23987 1.4819 0.79152 1 50210 13801 31384 31401 57867 57867 0.0374441343651597 VPAQLPML 8 Unmodified _VPAQLPML_ 0 0 0 REV__ENST00000361171.7_1_9:129267584-129267776:+|nuORF REV__ENST00000361171.7_1_9:129267584-129267776:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 434.7797546386719 2 434.751682 867.48881 0.099841 4.3406E-05 -0.43554 -0.00018935 -0.3357 -0.00014595 434.7519417913424 48.29 0.041309 48.29 48.268 48.309 0 7 4 2 0 0 0 0.72333 1 10045 10045 0.79363 0 1 87566 + 50211 21901 31385 31402 57868 57868 0.04976532002046952 VPAVKHRK 8 Unmodified _VPAVKHRK_ 0 0 0 nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2|p.M1669Nfs*8|1|0.16|ENSG00000054654|chr14:64017706-64017707|-/A|frameshift_variant nc|ENSG00000054654|Q8WXH0|SYNE2 nc|ENSG00000054654|Q8WXH0|SYNE2 MSMS UPN47_class_I_Rep_3 4 467.8013610839844 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 63.997 1 67.171 66.671 67.671 3.1741 0 0 0 0.40746 1 15275 15275 0.69038 0 1 50212 935 31386 31403 57869 57869 0.11776896362130174 VPAWLRHL 8 Unmodified _VPAWLRHL_ 0 0 0 nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A nc|ENSG00000166736|P46098-3|HTR3A nc|ENSG00000166736|P46098-3|HTR3A MULTI-MSMS UPN46_class_I_Rep_3 1 496.295166015625 2 496.295436 990.57632 -0.084183 -4.178E-05 -0.17887 -8.8772E-05 -0.26305 -0.00013055 496.2952982494412 24.113 0.11288 24.113 24.059 24.172 0 28 10 3 0 0 0 0.82752 1 3133 3133 2.5775 0 1 142580 50213 4259 31387 31404 57870 57870 0.08065493987828631 VPCCNRQF 8 Unmodified _VPCCNRQF_ 0 0 0 L1MC_dup4882|chrX:136730571-136730776:+|1.721788213162628|0.0491813468484528|5.13|151.0|9|1|anti-sense L1MC_dup4882|chrX:136730571-136730776:+|1.721788213162628|0.0491813468484528|5.13|151.0|9|1|anti-sense L1MC_dup4882|chrX:136730571-136730776:+|1.721788213162628|0.0491813468484528|5.13|151.0|9|1|anti-sense MSMS UPN48_class_I_Rep_3 7 483.7195739746094 2 483.717847 965.421141 NaN NaN NaN NaN NaN NaN NaN 72.556 1 76.094 75.594 76.594 3.5373 0 0 0 0.40738 1 16919 16919 0.79363 0 1 50214 11063 31388 31405 57871 57871 -0.06295241200393775 VPDRTYIY 8 Unmodified _VPDRTYIY_ 0 0 0 REV__L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|41|2|sense REV__L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|41|2|sense MSMS UPN47_class_I_Rep_3 4 513.7669067382812 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 60.26 1 63.425 62.925 63.925 3.1651 0 0 0 0.40581 1 14138 14138 2.8892 0 1 + 50215 24880 31389 31406 57872 57872 0.0064576755189591495 VPDVKIYH 8 Unmodified _VPDVKIYH_ 0 0 0 L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|23|3|sense L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|23|3|sense L1ME3B_dup379|chr1:160303203-160304013:+|1.3468632080764416|0.3235366228387958|2.06|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 485.7722473144531 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 20.641 1 23.99 23.49 24.49 3.3496 0 0 0 0.40738 1 2166 2166 0.79363 0 1 50216 12714 31390 31407 57873 57873 0.0423837527713431 VPDVWRGR 8 Unmodified _VPDVWRGR_ 0 0 0 REV__MLT1K_dup9980|chr10:75533917-75534096:-|1.1608888647424005|0.0033342759970743|8.44|150.0|13|3|anti-sense REV__MLT1K_dup9980|chr10:75533917-75534096:-|1.1608888647424005|0.0033342759970743|8.44|150.0|13|3|anti-sense MSMS UPN46_class_I_Rep_3 1 492.7591857910156 2 492.772326 983.530098 NaN NaN NaN NaN NaN NaN NaN 13.283 1 13.283 12.783 13.783 0 0 0 0 0.40604 1 346 346 2.5775 0 1 + 50217 31796 31391 31408 57874 57874 0.03767429085758067 VPDWARPCPH 10 Unmodified _VPDWARPCPH_ 0 0 0 ENST00000587928.5_1_19:10792552-10792801:+|nuORF ENST00000587928.5_1_19:10792552-10792801:+|nuORF ENST00000587928.5_1_19:10792552-10792801:+|nuORF MSMS UPN48_class_I_Rep_3 7 589.298828125 2 589.2822 1176.54985 NaN NaN NaN NaN NaN NaN NaN 33.08 1 36.77 36.27 37.27 3.6896 0 0 0 0.53105 1 5099 5099 1.4819 0.28856 1 50218 7593 31392 31409 57875 57875 -0.03136562965801204 VPEDMRREAPP 11 Unmodified _VPEDMRREAPP_ 0 0 0 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS UPN47_class_I_Rep_1 2 432.88531494140625 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 91.943 1 95.648 95.148 96.148 3.7053 0 0 0 0.38417 1 22929 22929 0.45452 0.046251 1 + 50219 17837 31393 31410 57876 57876 -0.006769608022977991 VPEGRNVT 8 Unmodified _VPEGRNVT_ 0 0 0 ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B ENSG00000189409|ENST00000356026|MMP23B ENSG00000189409|ENST00000356026|MMP23B MSMS UPN47_class_I_Rep_1 2 436.236328125 2 436.235242 870.45593 NaN NaN NaN NaN NaN NaN NaN 99.856 1 103.65 103.15 104.15 3.7942 0 0 0 0.39819 1 24691 24691 8.5933 3.3626 1 50220 5277 31394 31411 57877 57877 0.01552041203558474 VPEILVRY 8 Unmodified _VPEILVRY_ 0 0 0 L1PA6_dup3120|chr8:74015889-74022085:+|1.252688891571788|0.1094165933798573|3.52|151.0|226|1|anti-sense;L1PA7_dup11683|chr15:34286997-34293148:-|8.720366939734543|0.0873458630686003|6.64|151.0|207|1|anti-sense;L1PA7_dup5427|chr6:97155321-97159601:-|2.081530715041847|0.0676919048516874|4.94|151.0|176|1|anti-sense L1PA6_dup3120|chr8:74015889-74022085:+|1.252688891571788|0.1094165933798573|3.52|151.0|226|1|anti-sense L1PA6_dup3120|chr8:74015889-74022085:+|1.252688891571788|0.1094165933798573|3.52|151.0|226|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.794921875 2 494.794935 987.575317 -0.26552 -0.00013138 0.27528 0.00013621 0.0097631 4.8307E-06 494.7950226733374 36.206 0.97769 39.875 39.534 40.512 3.6692 165 73 3 0 0 0 0.82752 1 6692 6692 11.64 0.81637 1 334060 50221 14605 31395 31412 57878 57878 0.08103234828274708 VPEKIERI 8 Unmodified _VPEKIERI_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-SECPEP UPN47_class_I_Rep_2 3 491.7965087890625 2 492.297842 982.581131 0.040404 1.9891E-05 0.49137 0.0002419 0.53178 0.00026179 492.29778290129354 44.772 0.10378 48.128 48.03 48.134 3.3556 10 7 2 0 0 0 0.72333 1 9363 9363 2.3027 0 1 40742 50222 1181 31396 31413 57879 57879 0.08914333339953373 VPEKIERI 8 Unmodified _VPEKIERI_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MATCH UPN46_class_I_Rep_3 1 2 492.297842 982.581131 0.25699 0.00012652 -3.0594 -0.0015062 -2.8024 -0.0013796 492.2971174546628 47.913 0.037163 47.913 47.887 47.925 0 -0.10715 -0.0031251 NaN 2.3027 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 67412 50223 1181 31396 31413 0.08914333339953373 VPEKIKTD 8 Unmodified _VPEKIKTD_ 0 0 0 nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;HERVK-int_dup102|chr7:4583489-4590929:-|4.593883978504058|0.4463608682754711|3.36|151.0|36|1|sense;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG821|P63135|ERVK-7_pol;HERVK-int_dup167|chr11:62376126-62381099:-|1.5618346043747366|0.3329436697116388|2.23|150.0|80|2|sense;nc|ENSG855|P10266|ERVK-10_pol nc|ENSG801|P63132|HERVK_113_pro nc|ENSG801|P63132|HERVK_113_pro MULTI-MSMS UPN48_class_I_Rep_1 5 465.2702941894531 2 465.26875 928.522947 0.0617 2.8707E-05 0.021869 1.0175E-05 0.083569 3.8882E-05 465.27027997784995 99.661 0.3192 103.27 103.05 103.37 3.6065 109 42 4 0 0 0 0.82752 1 24029 24029 0.69038 0 1 615480 50224 16864 31397 31414 57880 57880 0.05582651694669494 VPEPQDPH 8 Unmodified _VPEPQDPH_ 0 0 0 ENST00000339554.7_2_9:140344091-140346841:-|nuORF ENST00000339554.7_2_9:140344091-140346841:-|nuORF ENST00000339554.7_2_9:140344091-140346841:-|nuORF MSMS UPN46_class_I_Rep_3 1 459.7214660644531 2 459.719424 917.424296 NaN NaN NaN NaN NaN NaN NaN 96.253 1 96.253 95.753 96.753 0 0 0 0 0.39624 1 23399 23399 9.3474 0 1 50225 6224 31398 31415 57881 57881 -0.037719515503795265 VPESYSGEL 9 Unmodified _VPESYSGEL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_1 2 490.73199462890625 2 490.732197 979.449842 -0.093333 -4.5802E-05 0.030894 1.5161E-05 -0.06244 -3.0641E-05 490.7320961246353 46.565 0.70626 50.265 49.926 50.632 3.6999 94 46 3 0 0 0 0.25207 2 9913 9829;9913 16.942 16.942 1 196210 50226 3707;16717 31399 31416 57882;57883 57883 -0.04070521818596262 VPESYSGEL 9 Unmodified _VPESYSGEL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_2 3 490.7318420410156 2 490.732197 979.449842 0.14093 6.9158E-05 -0.24788 -0.00012164 -0.10695 -5.2484E-05 490.7319712415112 46.873 0.71582 50.224 49.918 50.634 3.3515 98 52 2 0 0 0 0.25207 3 10045 9963;10001;10045 16.942 11.64 1 243180 50227 3707;16717 31399 31416 57884;57885;57886 57886 -0.04070521818596262 VPESYSGEL 9 Unmodified _VPESYSGEL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;TTN|p.P16369Tfs*3|1|0.12|ENSG00000155657|chr2:178605149-178605150|-/T|frameshift_variant;TTN|p.W16885*|1|0.07|ENSG00000155657|chr2:178601419-178601419|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS UPN47_class_I_Rep_3 4 490.73199462890625 2 490.732197 979.449842 0.080951 3.9725E-05 -0.2528 -0.00012406 -0.17185 -8.4331E-05 490.73199621892985 46.94 0.69437 50.184 49.948 50.642 3.2439 78 43 2 0 0 0 0.25207 2 10078 10043;10078 16.942 1.0951 1 269560 50228 3707;16717 31399 31416 57887;57888 57888 -0.04070521818596262 VPETPLPHQ 9 Unmodified _VPETPLPHQ_ 0 0 0 L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|1|1|sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|1|1|sense L1MA6_dup1839|chr5:116334793-116336268:+|2.858716299699062|0.0276359330764383|6.69|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 509.6219177246094 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 37.451 1 37.451 36.951 37.951 0 0 0 0 0.39598 1 7045 7045 1.6526 0.32309 1 50229 9963 31400 31417 57889 57889 0.021491699262014663 VPEVPHIL 8 Unmodified _VPEVPHIL_ 0 0 0 L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|25|2|sense L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|25|2|sense L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.26904296875 2 452.268553 902.522553 -0.029136 -1.3177E-05 1.7549 0.0007937 1.7258 0.00078052 452.26930701642493 31.802 0.10639 31.802 31.783 31.889 0 16 8 2 0 0 0 0.82752 1 5367 5367 0.79363 0 1 152940 50230 8970 31401 31418 57890 57890 0.06739276765483737 VPEVPHIL 8 Unmodified _VPEVPHIL_ 0 0 0 L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|25|2|sense L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|25|2|sense L1M4a2_dup1739|chr16:4059929-4062035:+|1.1695436193467594|0.0195975318889599|5.9|150.0|25|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2691345214844 2 452.268553 902.522553 -0.012269 -5.5488E-06 1.5577 0.0007045 1.5454 0.00069895 452.2692658961698 32.588 0.090248 32.588 32.569 32.659 0 6 4 2 0 0 0 0.82752 1 5601 5601 0.79363 0 1 340370 50231 8970 31401 31418 57891 57891 0.06739276765483737 VPFAGIGLGF 10 Unmodified _VPFAGIGLGF_ 0 0 0 REV__HERVL-int_dup374|chr3:17593199-17594845:+|2.790928145523262|0.0148231048771447|7.56|151.0|34|2|sense REV__HERVL-int_dup374|chr3:17593199-17594845:+|2.790928145523262|0.0148231048771447|7.56|151.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 489.27410888671875 2 489.276378 976.538203 NaN NaN NaN NaN NaN NaN NaN 62.028 1 65.496 64.996 65.996 3.4678 0 0 0 0.53105 1 13850 13850 18.135 0 1 + 50232 23856 31402 31419 57892 57892 0.048995632825153734 VPFAGIGLGF 10 Unmodified _VPFAGIGLGF_ 0 0 0 REV__HERVL-int_dup374|chr3:17593199-17594845:+|2.790928145523262|0.0148231048771447|7.56|151.0|34|2|sense REV__HERVL-int_dup374|chr3:17593199-17594845:+|2.790928145523262|0.0148231048771447|7.56|151.0|34|2|sense MSMS UPN48_class_I_Rep_3 7 489.2748107910156 2 489.276378 976.538203 NaN NaN NaN NaN NaN NaN NaN 61.735 1 65.245 64.745 65.745 3.5104 0 0 0 0.53105 1 13667 13667 12.532 0 1 + 50233 23856 31402 31419 57893 57893 0.048995632825153734 VPFHPIWC 8 Unmodified _VPFHPIWC_ 0 0 0 REV__ENST00000584531.1_1_18:14962171-14965804:+|nuORF REV__ENST00000584531.1_1_18:14962171-14965804:+|nuORF MSMS UPN47_class_I_Rep_2 3 499.7485046386719 2 499.749473 997.484393 NaN NaN NaN NaN NaN NaN NaN 25.99 1 29.484 28.984 29.984 3.4945 0 0 0 0.40738 1 3694 3694 0.79363 0 1 + 50234 23137 31403 31420 57894 57894 -0.014449324208499092 VPFKNKTF 8 Unmodified _VPFKNKTF_ 0 0 0 L1MEg_dup6162|chr6:163470282-163471785:+|3.070451693550498|0.0458154154534007|6.07|151.0|44|3|sense L1MEg_dup6162|chr6:163470282-163471785:+|3.070451693550498|0.0458154154534007|6.07|151.0|44|3|sense L1MEg_dup6162|chr6:163470282-163471785:+|3.070451693550498|0.0458154154534007|6.07|151.0|44|3|sense MSMS UPN47_class_I_Rep_1 2 490.78106689453125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.11 1 114.68 114.18 115.18 3.572 0 0 0 0.40746 1 27398 27398 0.69038 0 1 50235 13413 31404 31421 57895 57895 0.05850965656804874 VPFLAGVHLG 10 Unmodified _VPFLAGVHLG_ 0 0 0 REV__ENSG00000124215|ENST00000348616|CDH26 REV__ENSG00000124215|ENST00000348616|CDH26 MSMS UPN47_class_I_Rep_1 2 505.29534912109375 2 505.295102 1008.57565 NaN NaN NaN NaN NaN NaN NaN 37.345 1 41.01 40.51 41.51 3.6652 0 0 0 0.53105 1 7075 7075 7.9102 3.9658 1 + 50236 18800 31405 31422 57896 57896 0.07170654548156108 VPFLKDVYIFL 11 Unmodified _VPFLKDVYIFL_ 0 0 0 ENST00000448507.5_1_4:7033984-7034191:+|nuORF ENST00000448507.5_1_4:7033984-7034191:+|nuORF ENST00000448507.5_1_4:7033984-7034191:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 451.9324951171875 3 451.93208 1352.77441 0.19003 8.5881E-05 1.6217 0.0007329 1.8117 0.00081878 451.9325680576901 107.24 0.064827 107.24 107.2 107.26 0 13 7 2 0 0 0 0.65891 1 26149 26149 2.4348 0.97967 1 142600 50237 6800 31406 31423 57897 57897 0.11213450336299502 VPFLKDVYIFL 11 Unmodified _VPFLKDVYIFL_ 0 0 0 ENST00000448507.5_1_4:7033984-7034191:+|nuORF ENST00000448507.5_1_4:7033984-7034191:+|nuORF ENST00000448507.5_1_4:7033984-7034191:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 451.93208 1352.77441 -0.15994 -7.2283E-05 1.7243 0.00077928 1.5644 0.000707 451.9327199035893 103.39 0.17447 106.89 106.8 106.98 3.5057 -0.17555 2.0929E-05 NaN 2.4348 51 26 3 NaN NaN NaN NaN 0 NaN NaN 0 189660 50238 6800 31406 31423 0.11213450336299502 VPFMPILL 8 Unmodified _VPFMPILL_ 0 0 0 L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|156|1|anti-sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|156|1|anti-sense L1PB1_dup6647|chr8:89736822-89741421:+|3.017732131133119|0.167181668502543|4.17|151.0|156|1|anti-sense MSMS UPN47_class_I_Rep_1 2 465.270263671875 2 465.280075 928.545597 NaN NaN NaN NaN NaN NaN NaN 99.791 1 103.58 103.08 104.08 3.7942 0 0 0 0.40738 1 24671 24671 0.79363 0 1 50239 15177 31407 31424 57898 57898 0.07846579558599842 VPFPLLLL 8 Unmodified _VPFPLLLL_ 0 0 0 L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|89|2|anti-sense;HERV9-int_dup326|chr18:26233679-26238550:-|1.1557033653713158|0.0120504512284269|6.58|151.0|141|1|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|89|2|anti-sense L1MC1_dup6356|chr7:152342460-152344198:+|1.2430506476635714|0.0139397148521882|6.48|151.0|89|2|anti-sense MSMS UPN47_class_I_Rep_1 2 456.3018493652344 2 456.301865 910.589176 NaN NaN NaN NaN NaN NaN NaN 31.087 1 34.817 34.317 35.317 3.7293 0 0 0 0.40738 1 5168 5168 0.79363 0 1 50240 8077 31408 31425 57899 57899 0.13030512327384258 VPFTRRWKF 9 Unmodified _VPFTRRWKF_ 0 0 0 L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|81|2|anti-sense L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|81|2|anti-sense L1ME2_dup6890|chr9:89486934-89488352:+|1.394363044503548|0.0307009058208436|5.51|151.0|81|2|anti-sense MSMS UPN48_class_I_Rep_2 6 618.8531494140625 2 618.85365 1235.69275 NaN NaN NaN NaN NaN NaN NaN 75.844 1 79.445 78.945 79.945 3.6011 0 0 0 0.39518 1 17899 17899 1.8442 0 1 50241 12519 31409 31426 57900 57900 0.08432812487740193 VPFVQAEIKFA 11 Unmodified _VPFVQAEIKFA_ 0 0 0 REV__L1MEd_dup14974|chr11:33125376-33126008:-|1.2994123367100594|0.3380286525223784|1.94|151.0|39|2|anti-sense REV__L1MEd_dup14974|chr11:33125376-33126008:-|1.2994123367100594|0.3380286525223784|1.94|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_1 5 624.850341796875 2 624.852981 1247.69141 NaN NaN NaN NaN NaN NaN NaN 68.818 1 72.273 71.773 72.773 3.4548 0 0 0 0.37149 1 15918 15918 7.609 1.4171 1 + 50242 28530 31410 31427 57901 57901 0.07747133608313561 VPGKRPPR 8 Unmodified _VPGKRPPR_ 0 0 0 nc|ENSG00000157985|Q9UPQ3-2|AGAP1;nc|ENSG00000135439|Q99490-2|AGAP2;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2 nc|ENSG00000157985|Q9UPQ3-2|AGAP1 nc|ENSG00000157985|Q9UPQ3-2|AGAP1 MSMS UPN48_class_I_Rep_1 5 453.7843933105469 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 67.305 1 70.756 70.256 71.256 3.4516 0 0 0 0.40746 1 15458 15458 0.69038 0 1 50243 2909 31411 31428 57902 57902 0.09936323328031449 VPGMVKGL 8 Unmodified _VPGMVKGL_ 0 0 0 nc|ENSG00000131067|Q9UJ14-4|GGT7;ENSG00000131067|ENST00000336431|GGT7 nc|ENSG00000131067|Q9UJ14-4|GGT7 nc|ENSG00000131067|Q9UJ14-4|GGT7 MSMS UPN46_class_I_Rep_3 1 400.739501953125 2 400.738574 799.462595 NaN NaN NaN NaN NaN NaN NaN 109.81 1 109.81 109.31 110.31 0 0 0 0 0.40746 1 27006 27006 0.69038 0 1 50244 2699 31412 31429 57903 57903 0.05484262830600528 VPGPARRG 8 Unmodified _VPGPARRG_ 0 0 0 ENSG00000187690|ENST00000342995|EZHIP ENSG00000187690|ENST00000342995|EZHIP ENSG00000187690|ENST00000342995|EZHIP MULTI-MSMS UPN48_class_I_Rep_2 6 405.2406311035156 2 405.240661 808.46677 0.076173 3.0868E-05 0.031435 1.2739E-05 0.10761 4.3607E-05 405.24063011420424 76.219 1.0701 79.82 79.402 80.472 3.6012 296 126 3 0 0 0 0.82752 1 18110 18110 0.69038 0 1 617530 50245 5202 31413 31430 57904 57904 0.054874883685215536 VPGPSKKNVR 10 Unmodified _VPGPSKKNVR_ 0 0 0 REV__nc|ENSG00000115183|Q9C0D5-2|TANC1 REV__nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-SECPEP UPN47_class_I_Rep_2 3 540.7872924804688 2 541.327465 1080.64038 0.0067734 3.6666E-06 -0.22033 -0.00011927 -0.21355 -0.0001156 541.3272521029818 12.707 0.14068 16.095 16.056 16.197 3.388 21 15 3 0 0 0 0.84575 1 155 155 1.4819 0 1 27987 + 50246 18546 31414 31431 57905 57905 0.10328229354126961 VPGPWRRA 8 Unmodified _VPGPWRRA_ 0 0 0 REV__ENST00000531239.2_1_11:67120500-67120993:-|nuORF REV__ENST00000531239.2_1_11:67120500-67120993:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.76904296875 2 469.769586 937.524619 NaN NaN NaN NaN NaN NaN NaN 31.129 1 34.843 34.343 35.343 3.7146 0 0 0 0.40604 1 4568 4568 2.5775 0.27475 1 + 50247 22853 31415 31432 57906 57906 0.05335750293932051 VPGRESVTKAA 11 Unmodified _VPGRESVTKAA_ 0 0 0 REV__ENST00000556463.5_1_14:103969437-103969494:+|nuORF REV__ENST00000556463.5_1_14:103969437-103969494:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 557.8142700195312 2 557.814387 1113.61422 0.40814 0.00022767 -0.42231 -0.00023557 -0.014172 -7.9055E-06 557.8141934628882 100.45 0.29231 104.3 104.08 104.38 3.8537 54 42 2 0 0 0 0.65821 1 23774 23774 2.4985 2.4985 1 113200 + 50248 22993 31416 31433 57907 57907 0.06195915392004281 VPGRHRACHP 10 Unmodified _VPGRHRACHP_ 0 0 0 REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 565.2552490234375 2 565.293434 1128.57231 -0.058528 -3.3085E-05 -3.1401 -0.0017751 -3.1986 -0.0018082 565.2912116457563 32.467 0.072754 36.18 36.121 36.194 3.7131 8 5 2 0 0 0 0.84575 1 5584 5584 3.5965 1.2938 1 24610 + 50249 22396 31417 31434 57908 57908 0.013170812224643669 VPGRLLLL 8 Unmodified _VPGRLLLL_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS UPN47_class_I_Rep_2 3 440.7989807128906 2 440.802563 879.590573 -0.20401 -8.9929E-05 -3.297 -0.0014533 -3.501 -0.0015433 440.7993182388509 82.333 0.2515 85.731 85.602 85.853 3.3984 39 30 2 0 0 0 0.82752 1 20533 20533 0.69038 0 1 82353 50250 2522 31418 31435 57909 57909 0.1459614641613598 VPGRLLLL 8 Unmodified _VPGRLLLL_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MATCH UPN47_class_I_Rep_1 2 2 440.802563 879.590573 0.089959 3.9654E-05 -2.3025 -0.001015 -2.2126 -0.0009753 440.79945018514286 82.366 0.30591 85.878 85.777 86.083 3.5122 0.073149 0.00030032 NaN 0.69038 46 33 2 NaN NaN NaN NaN 0 NaN NaN 0 56945 50251 2522 31418 31435 0.1459614641613598 VPGRLQREI 9 Unmodified _VPGRLQREI_ 0 0 0 ENST00000491239.2_1_1:27627845-27627902:+|nuORF ENST00000491239.2_1_1:27627845-27627902:+|nuORF ENST00000491239.2_1_1:27627845-27627902:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 534.7915649414062 2 534.31964 1066.62473 -0.23532 -0.00012573 0.18455 9.8607E-05 -0.050771 -2.7128E-05 534.3197709975964 28.913 0.83549 32.238 31.893 32.729 3.3241 111 70 2 0 0 0 0.11873 1 4673 4673 8.5933 2.8614 1 97241 50252 7071 31419 31436 57910 57910 0.09407942837083283 VPGRLQREI 9 Unmodified _VPGRLQREI_ 0 0 0 ENST00000491239.2_1_1:27627845-27627902:+|nuORF ENST00000491239.2_1_1:27627845-27627902:+|nuORF ENST00000491239.2_1_1:27627845-27627902:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 534.31964 1066.62473 -0.04926 -2.6321E-05 -0.13321 -7.1178E-05 -0.18247 -9.7499E-05 534.3195908376764 28.548 0.81192 32.046 31.741 32.553 3.4986 -0.075659 -0.00016468 NaN 8.5933 104 65 2 NaN NaN NaN NaN 0 NaN NaN 0 123920 50253 7071 31419 31436 0.09407942837083283 VPGRPMKF 8 Unmodified _VPGRPMKF_ 0 0 0 REV__ENST00000423610.1_1_22:32435574-32435880:+|nuORF REV__ENST00000423610.1_1_22:32435574-32435880:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 465.7604675292969 2 466.262748 930.510943 0.12384 5.7741E-05 -0.76348 -0.00035598 -0.63964 -0.00029824 466.2624020529873 79.117 0.31717 82.563 82.327 82.644 3.4456 31 25 2 0 0 0 0.72333 1 19709 19709 0.79363 0 1 518680 + 50254 22255 31420 31437 57911 57911 0.04290756470481938 VPGRPMKF 8 Unmodified _VPGRPMKF_ 0 0 0 REV__ENST00000423610.1_1_22:32435574-32435880:+|nuORF REV__ENST00000423610.1_1_22:32435574-32435880:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 466.262748 930.510943 0.073124 3.4095E-05 -0.31 -0.00014454 -0.23687 -0.00011044 466.262542966905 79.568 0.05159 82.923 82.903 82.954 3.3554 0.18018 0.00035777 NaN 0.79363 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 31440 + 50255 22255 31420 31437 0.04290756470481938 VPGRRFHL 8 Unmodified _VPGRRFHL_ 0 0 0 REV__MER21A_dup460|chr4:48287719-48288688:+|1.1686019011251478|0.0573425348846376|4.35|151.0|22|3|sense REV__MER21A_dup460|chr4:48287719-48288688:+|1.1686019011251478|0.0573425348846376|4.35|151.0|22|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.7956848144531 2 491.290685 980.566818 0.096751 4.7533E-05 -1.3654 -0.0006708 -1.2686 -0.00062327 491.28912499442134 53.518 0.69637 57.101 56.767 57.464 3.5836 105 54 3 0 0 0 0.82752 1 11091 11091 2.5775 0.27475 1 627310 + 50256 31186 31421 31438 57912 57912 0.07575725702304226 VPHCFYCF 8 Unmodified _VPHCFYCF_ 0 0 0 L1MB3_dup716|chr1:100937259-100938285:-|1.044685241142396|0.0371677851834238|4.81|151.0|67|3|anti-sense L1MB3_dup716|chr1:100937259-100938285:-|1.044685241142396|0.0371677851834238|4.81|151.0|67|3|anti-sense L1MB3_dup716|chr1:100937259-100938285:-|1.044685241142396|0.0371677851834238|4.81|151.0|67|3|anti-sense MSMS UPN48_class_I_Rep_3 7 508.2115173339844 2 508.211866 1014.40918 NaN NaN NaN NaN NaN NaN NaN 52.984 1 56.568 56.068 57.068 3.5836 0 0 0 0.4032 1 10997 10997 6.3541 0 1 50257 10451 31422 31439 57913 57913 -0.09744857943587704 VPHFLYSV 8 Unmodified _VPHFLYSV_ 0 0 0 L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense;L1PREC2_dup5787|chr12:9187011-9190530:+|1.4630518329759543|0.0811721165215578|4.17|151.0|121|1|anti-sense;L1PA11_dup2971|chr11:74827652-74830037:+|4.411437241502503|0.4397573818689854|3.33|151.0|108|2|anti-sense;L1MA2_dup6397|chr14:60882146-60884486:-|1.0613918632094734|0.0516729378425987|4.36|149.0|145|3|anti-sense;L1PA10_dup6918|chr21:24516809-24519363:+|1.1948549545656404|0.0293285561476555|5.35|147.0|116|2|anti-sense;L1PA15_dup264|chr1:156788138-156788659:-|1.3962125949313062|0.4671976098258907|1.58|151.0|27|2|anti-sense;L1PA16_dup4848|chr5:131759020-131760254:+|1.2630065630290117|0.0293401779713411|5.43|151.0|49|1|anti-sense;L1PA7_dup4111|chr5:34085605-34086452:+|2.200459501314173|0.0318265370091222|6.11|151.0|47|3|anti-sense;L1PA5_dup8191|chr11:35773475-35779564:-|1.9669102570664796|0.1038249029636593|4.24|151.0|241|2|anti-sense;L1PA13_dup8338|chr18:46022848-46023274:+|2.4800525548632244|0.168682215732841|3.88|151.0|29|2|anti-sense;L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|307|3|anti-sense;L1PA15_dup644|chr2:39316900-39318409:+|1.1446474181394155|0.2639994477917565|2.12|150.0|56|1|anti-sense;L1PA16_dup6487|chr7:149268405-149269672:-|1.1922623502547804|0.1222358498287068|3.29|151.0|78|3|anti-sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.28460693359375 2 481.260728 960.506903 NaN NaN NaN NaN NaN NaN NaN 117.28 1 117.28 116.78 117.78 0 0 0 0 0.40746 1 29066 29066 0.69038 0 1 50258 13925 31423 31440 57914 57914 0.025069902484233353 VPHLASVH 8 Unmodified _VPHLASVH_ 0 0 0 REV__ENST00000557684.5_1_12:25267803-25348012:-|nuORF REV__ENST00000557684.5_1_12:25267803-25348012:-|nuORF MSMS UPN47_class_I_Rep_1 2 430.255859375 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 109.3 1 112.91 112.41 113.41 3.6046 0 0 0 0.40404 1 26951 26951 5.2307 0 1 + 50259 18650 31424 31441 57915 57915 0.03628952791427764 VPHPGIMR 8 Unmodified _VPHPGIMR_ 0 0 0 MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|57|1|anti-sense MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|57|1|anti-sense MER52A_dup87|chr2:184679314-184681257:+|1.107982605396676|0.0243288278277683|5.51|142.0|57|1|anti-sense MSMS UPN47_class_I_Rep_1 2 453.7611389160156 2 453.752547 905.490542 NaN NaN NaN NaN NaN NaN NaN 74.57 1 77.964 77.464 78.464 3.3937 0 0 0 0.40604 1 18359 18359 2.5775 0 1 50260 16100 31425 31442 57916 57916 0.034015858106840824 VPHPYVYI 8 Unmodified _VPHPYVYI_ 0 0 0 REV__L1ME3B_dup4413|chrX:20182555-20183166:-|1.4138617368846418|0.0343374026926141|5.36|151.0|21|3|sense REV__L1ME3B_dup4413|chrX:20182555-20183166:-|1.4138617368846418|0.0343374026926141|5.36|151.0|21|3|sense MSMS UPN48_class_I_Rep_2 6 494.7178649902344 2 494.268553 986.522553 NaN NaN NaN NaN NaN NaN NaN 47.524 1 51.26 50.76 51.76 3.7361 0 0 0 0.40581 1 9395 9395 2.8892 0 1 + 50261 28060 31426 31443 57917 57917 0.028752767654623312 VPIDLFKEYC 10 Unmodified _VPIDLFKEYC_ 0 0 0 REV__ENSG00000147596|ENST00000276594|PRDM14 REV__ENSG00000147596|ENST00000276594|PRDM14 MULTI-MSMS UPN47_class_I_Rep_2 3 409.5423278808594 3 409.542375 1225.6053 -0.99937 -0.00040929 0.43803 0.00017939 -0.56135 -0.0002299 409.5426793484085 15.193 0.65547 18.579 18.398 19.053 3.3864 196 75 4 0 0 0 0.55448 1 768 768 2.6312 0 1 229940 + 50262 19573 31427 31444 57918 57918 0.0015180571131168108 VPIDLFKEYC 10 Unmodified _VPIDLFKEYC_ 0 0 0 REV__ENSG00000147596|ENST00000276594|PRDM14 REV__ENSG00000147596|ENST00000276594|PRDM14 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 409.542375 1225.6053 -0.99937 -0.00040929 0.43803 0.00017939 -0.56135 -0.0002299 409.5426793484085 15.193 0.65547 18.579 18.398 19.053 3.3864 -0.050083 -0.00013384 NaN 2.6312 196 75 4 NaN NaN NaN NaN 0 NaN NaN 0 229940 + 50263 19573 31427 31444 0.0015180571131168108 VPIDLFKEYC 10 Unmodified _VPIDLFKEYC_ 0 0 0 REV__ENSG00000147596|ENST00000276594|PRDM14 REV__ENSG00000147596|ENST00000276594|PRDM14 MULTI-MATCH UPN47_class_I_Rep_3 4 3 409.542375 1225.6053 -1.523 -0.00062372 0.71683 0.00029357 -0.80613 -0.00033015 409.54289249692266 15.314 1.2308 18.679 18.445 19.676 3.3659 0.050083 0.00020871 NaN 2.6312 271 142 4 NaN NaN NaN NaN 0 NaN NaN 0 161240 + 50264 19573 31427 31444 0.0015180571131168108 VPIEPHWHF 9 Unmodified _VPIEPHWHF_ 0 0 0 ENSG00000124091|ENST00000243913|GCNT7;nc|ENSG00000124091|Q6ZNI0|GCNT7 ENSG00000124091|ENST00000243913|GCNT7 ENSG00000124091|ENST00000243913|GCNT7 MSMS UPN48_class_I_Rep_1 5 581.296142578125 2 581.295633 1160.57671 NaN NaN NaN NaN NaN NaN NaN 29.007 1 32.557 32.057 33.057 3.5499 0 0 0 0.40038 1 3968 3968 0.6015 0 1 50265 2444 31428 31445 57919 57919 0.0028486891701504646 VPIFKKML 8 Unmodified _VPIFKKML_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense MSMS UPN48_class_I_Rep_1 5 488.3063659667969 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 63.485 1 66.943 66.443 67.443 3.4578 0 0 0 0.40746 1 14297 14297 0.69038 0 1 50266 8409 31429 31446 57920 57920 0.1103795734123878 VPIFKKML 8 Unmodified _VPIFKKML_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense MSMS UPN48_class_I_Rep_2 6 488.30670166015625 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 61.478 1 64.952 64.452 65.452 3.4738 0 0 0 0.40604 1 13660 13660 2.5775 0 1 50267 8409 31429 31446 57921 57921 0.1103795734123878 VPIFKKML 8 Unmodified _VPIFKKML_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense MSMS UPN48_class_I_Rep_2 6 488.30535888671875 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 61.503 1 64.977 64.477 65.477 3.4738 0 0 0 0.40604 1 13667 13667 2.5775 0 1 50268 8409 31429 31446 57922 57922 0.1103795734123878 VPIFKKML 8 Unmodified _VPIFKKML_ 0 0 0 HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense HERVP71A-int_dup40|chr3:5143512-5147022:-|8.340878881027866|0.2951550721128514|4.82|151.0|38|2|sense MSMS UPN48_class_I_Rep_3 7 488.3064880371094 2 488.306624 974.598695 NaN NaN NaN NaN NaN NaN NaN 62.46 1 65.971 65.471 66.471 3.5104 0 0 0 0.40746 1 13884 13884 0.69038 0 1 50269 8409 31429 31446 57923 57923 0.1103795734123878 VPIKYQQI 8 Unmodified _VPIKYQQI_ 0 0 0 ENSG00000091436|ENST00000375213|MAP3K20 ENSG00000091436|ENST00000375213|MAP3K20 ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MSMS UPN47_class_I_Rep_1 2 494.7945556640625 2 494.794935 987.575317 -0.26552 -0.00013138 0.27528 0.00013621 0.0097631 4.8307E-06 494.7950226733374 36.206 0.97769 39.875 39.534 40.512 3.6692 165 73 3 0 0 0 0.82752 2 6902 6855;6902 12.532 7.9102 1 334060 50270 1372 31430 31447 57924;57925 57925 0.08103234828263339 VPIKYQQI 8 Unmodified _VPIKYQQI_ 0 0 0 ENSG00000091436|ENST00000375213|MAP3K20 ENSG00000091436|ENST00000375213|MAP3K20 ENSG00000091436|ENST00000375213|MAP3K20 MULTI-MSMS UPN47_class_I_Rep_2 3 494.7948303222656 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 1 7046 7046 7.9102 3.9658 1 349140 50271 1372 31430 31447 57926 57926 0.08103234828263339 VPILIKLAL 9 Unmodified _VPILIKLAL_ 0 0 0 REV__nc|ENSG00000239388|A6NK59|ASB14 REV__nc|ENSG00000239388|A6NK59|ASB14 MSMS UPN46_class_I_Rep_3 1 490.265625 2 490.349346 978.684139 NaN NaN NaN NaN NaN NaN NaN 105.57 1 105.57 105.07 106.07 0 0 0 0 0.4029 1 25751 25751 0 0 1 + 50272 21322 31431 31448 57927 57927 0.19394445798536708 VPILLRVLIVK 11 Unmodified _VPILLRVLIVK_ 0 0 0 L1PB1_dup7205|chr9:92552218-92554172:-|1.5845449506781664|0.0204218895227539|6.28|149.0|132|3|anti-sense L1PB1_dup7205|chr9:92552218-92554172:-|1.5845449506781664|0.0204218895227539|6.28|149.0|132|3|anti-sense L1PB1_dup7205|chr9:92552218-92554172:-|1.5845449506781664|0.0204218895227539|6.28|149.0|132|3|anti-sense MSMS UPN46_class_I_Rep_3 1 421.6355895996094 3 421.635598 1261.88496 NaN NaN NaN NaN NaN NaN NaN 96.26 1 96.26 95.76 96.76 0 0 0 0 0.38417 1 23401 23401 0 0 1 50273 15194 31432 31449 57928 57928 0.2644971511519998 VPIPLVAEE 9 Unmodified _VPIPLVAEE_ 0 0 0 REV__nc|ENSG00000100330|Q13615-3|MTMR3 REV__nc|ENSG00000100330|Q13615-3|MTMR3 MSMS UPN47_class_I_Rep_3 4 483.2913513183594 2 483.778951 965.543348 NaN NaN NaN NaN NaN NaN NaN 25.381 1 28.731 28.231 29.231 3.3509 0 0 0 0.4007 1 3560 3560 0.52476 0 1 + 50274 18106 31433 31450 57929 57929 0.05919822354474036 VPIRIIIVGP 10 Unmodified _VPIRIIIVGP_ 0 0 0 ENSG00000155085|ENST00000424296|AK9;ENSG00000155085.15,AK9,chr6,-,I32.1,109514438,109515856|29|3.22|7|intron ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 MSMS UPN46_class_I_Rep_3 1 538.3778076171875 2 538.863152 1075.71175 NaN NaN NaN NaN NaN NaN NaN 55.218 1 55.218 54.718 55.718 0 0 0 0 0.53105 1 11998 11998 0.45834 0 1 50275 3692 31434 31451 57930 57930 0.17692349058802392 VPIRNFRYI 9 Unmodified _VPIRNFRYI_ 0 0 0 REV__L1MC2_dup2651|chr7:123732360-123734510:+|1.2790757909964576|0.1377689654904555|3.21|151.0|17|1|sense REV__L1MC2_dup2651|chr7:123732360-123734510:+|1.2790757909964576|0.1377689654904555|3.21|151.0|17|1|sense MSMS UPN47_class_I_Rep_2 3 589.34326171875 2 589.345658 1176.67676 NaN NaN NaN NaN NaN NaN NaN 90.857 1 94.318 93.818 94.818 3.4613 0 0 0 0.4007 1 22520 22520 0.52476 0 1 + 50276 26648 31435 31452 57931 57931 0.09549106250847217 VPKFAAAATL 10 Unmodified _VPKFAAAATL_ 0 0 0 REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5 REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5 MULTI-MSMS UPN47_class_I_Rep_2 3 494.794921875 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.44401 1 6964 6964 16.149 0.30192 1 349140 + 50277 19964 31436 31453 57932 57932 0.08103234828263339 VPKFAAAATL 10 Unmodified _VPKFAAAATL_ 0 0 0 REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5 REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5 MULTI-MSMS UPN47_class_I_Rep_3 4 494.79473876953125 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.44401 1 7091 7091 16.149 2.2431 1 289630 + 50278 19964 31436 31453 57933 57933 0.08103234828263339 VPKGKNRN 8 Unmodified _VPKGKNRN_ 0 0 0 L1MEd_dup10256|chr7:140825553-140826153:-|1.206755588147947|0.0388376249717373|4.96|151.0|20|3|sense L1MEd_dup10256|chr7:140825553-140826153:-|1.206755588147947|0.0388376249717373|4.96|151.0|20|3|sense L1MEd_dup10256|chr7:140825553-140826153:-|1.206755588147947|0.0388376249717373|4.96|151.0|20|3|sense MSMS UPN47_class_I_Rep_3 4 456.7725830078125 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 18.45 1 21.805 21.305 22.305 3.3545 0 0 0 0.40625 1 1538 1538 2.3027 0 1 50279 13159 31437 31454 57934 57934 0.07079429085740685 VPKILICCV 9 Unmodified _VPKILICCV_ 0 0 0 L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|348|3|anti-sense;L1PA5_dup865|chr2:32100468-32106586:-|3.3602492408870277|0.3213428473120719|3.39|151.0|218|1|anti-sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|348|3|anti-sense L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|348|3|anti-sense MSMS UPN46_class_I_Rep_3 1 494.28863525390625 2 494.290117 986.56568 NaN NaN NaN NaN NaN NaN NaN 19.932 1 19.932 19.432 20.432 0 0 0 0 0.40038 1 1985 1985 0.6015 0 1 50280 14521 31438 31455 57935 57935 0.07186007226891888 VPKIPKILKIK 11 Unmodified _VPKIPKILKIK_ 0 0 0 HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|56|3|anti-sense HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|56|3|anti-sense HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|56|3|anti-sense MSMS UPN46_class_I_Rep_3 1 426.30645751953125 3 426.307481 1275.90061 NaN NaN NaN NaN NaN NaN NaN 112.1 1 112.1 111.6 112.6 0 0 0 0 0.38417 1 27668 27668 0 0 1 50281 7926 31439 31456 57936 57936 0.27370001632243657 VPKIPKILKIK 11 Unmodified _VPKIPKILKIK_ 0 0 0 HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|56|3|anti-sense HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|56|3|anti-sense HAL1b_dup4094|chr13:50116268-50117170:+|2.038846360791894|0.0560121388232235|5.19|151.0|56|3|anti-sense MSMS UPN46_class_I_Rep_3 1 426.30584716796875 3 426.307481 1275.90061 NaN NaN NaN NaN NaN NaN NaN 119.35 1 119.35 118.85 119.85 0 0 0 0 0.38417 1 29662 29662 0 0 1 50282 7926 31439 31456 57937 57937 0.27370001632243657 VPKKPSVLYL 10 Unmodified _VPKKPSVLYL_ 0 0 0 nc|ENSG00000204131|Q5HYW2-2|NHSL2;ENSG00000204131|ENST00000633930|NHSL2 nc|ENSG00000204131|Q5HYW2-2|NHSL2 nc|ENSG00000204131|Q5HYW2-2|NHSL2 MSMS UPN47_class_I_Rep_3 4 572.6973876953125 2 572.360442 1142.70633 NaN NaN NaN NaN NaN NaN NaN 78.502 1 81.784 81.284 82.284 3.2816 0 0 0 0.53105 1 19581 19581 0.40072 0 1 50283 5503 31440 31457 57938 57938 0.14068625476329544 VPKPVIKIE 9 Unmodified _VPKPVIKIE_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MSMS UPN48_class_I_Rep_2 6 511.8330078125 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 22.377 1 26.023 25.523 26.523 3.6459 0 0 0 0.39518 1 2275 2275 1.8442 0 1 50284 2209 31441 31458 57939 57939 0.14360667413518513 VPKQIERY 8 Unmodified _VPKQIERY_ 0 0 0 nc|ENSG00000067992|Q15120-2|PDK3;ENSG00000067992|ENST00000379162|PDK3 nc|ENSG00000067992|Q15120-2|PDK3 nc|ENSG00000067992|Q15120-2|PDK3 MSMS UPN48_class_I_Rep_1 5 516.7968139648438 2 516.795466 1031.57638 NaN NaN NaN NaN NaN NaN NaN 32.294 1 35.821 35.321 36.321 3.5266 0 0 0 0.40753 1 4893 4893 0.6015 0 1 50285 1042 31442 31459 57940 57940 0.06185449197187154 VPKRTSNTVY 10 Unmodified _VPKRTSNTVY_ 0 0 0 ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA MSMS UPN47_class_I_Rep_2 3 582.8246459960938 2 582.822212 1163.62987 NaN NaN NaN NaN NaN NaN NaN 51.606 1 54.945 54.445 55.445 3.3386 0 0 0 0.53105 1 11446 11446 1.4819 0 1 50286 4576 31443 31460 57941 57941 0.054602019090452814 VPKSRAPW 8 Unmodified _VPKSRAPW_ 0 0 0 REV__MER51D_dup6|chr1:120950600-120951069:+|2.8820586778153143|0.229126445427667|3.65|151.0|1|1|sense REV__MER51D_dup6|chr1:120950600-120951069:+|2.8820586778153143|0.229126445427667|3.65|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 470.7723693847656 2 470.771794 939.529036 NaN NaN NaN NaN NaN NaN NaN 75.74 1 79.24 78.74 79.74 3.4996 0 0 0 0.40738 1 17962 17962 0.79363 0 1 + 50287 31399 31444 31461 57942 57942 0.05685214716845621 VPKTHLEL 8 Unmodified _VPKTHLEL_ 0 0 0 nc|ENSG00000204472|P55008-2|AIF1;nc|ENSG00000204472|P55008-3|AIF1;ENSG00000204472|ENST00000376059|AIF1 nc|ENSG00000204472|P55008-2|AIF1 nc|ENSG00000204472|P55008-2|AIF1 MULTI-MSMS UPN47_class_I_Rep_1 2 468.7792053222656 2 468.779285 935.544017 -0.3358 -0.00015742 0.17619 8.2596E-05 -0.15961 -7.482E-05 468.7792878306449 32.556 0.79044 36.269 35.96 36.75 3.7131 97 64 2 0 0 0 0.82752 2 5591 5591;5698 16.149 5.3252 1 132620 50288 5525 31445 31462 57943;57944 57943 0.07366661794185347 VPKTHLEL 8 Unmodified _VPKTHLEL_ 0 0 0 nc|ENSG00000204472|P55008-2|AIF1;nc|ENSG00000204472|P55008-3|AIF1;ENSG00000204472|ENST00000376059|AIF1 nc|ENSG00000204472|P55008-2|AIF1 nc|ENSG00000204472|P55008-2|AIF1 MULTI-MSMS UPN47_class_I_Rep_2 3 468.77880859375 2 468.779285 935.544017 -0.35048 -0.0001643 0.079998 3.7501E-05 -0.27048 -0.0001268 468.7792392396822 32.914 0.73031 36.369 35.965 36.695 3.4547 90 56 2 0 0 0 0.82752 2 5723 5723;5761 12.241 1.4167 1 157060 50289 5525 31445 31462 57945;57946 57945 0.07366661794185347 VPKTHLEL 8 Unmodified _VPKTHLEL_ 0 0 0 nc|ENSG00000204472|P55008-2|AIF1;nc|ENSG00000204472|P55008-3|AIF1;ENSG00000204472|ENST00000376059|AIF1 nc|ENSG00000204472|P55008-2|AIF1 nc|ENSG00000204472|P55008-2|AIF1 MULTI-MSMS UPN47_class_I_Rep_3 4 468.7792053222656 2 468.779285 935.544017 -0.61982 -0.00029056 0.52816 0.00024759 -0.091658 -4.2967E-05 468.77943970832706 33.101 0.84261 36.387 36.101 36.944 3.2867 108 66 2 0 0 0 0.82752 3 5840 5840;5882;5921 21.537 5.6898 1 117590 50290 5525 31445 31462 57947;57948;57949 57947 0.07366661794185347 VPLAVLVGL 9 Unmodified _VPLAVLVGL_ 0 0 0 REV__nc|ENSG00000104728|O15013-7|ARHGEF10 REV__nc|ENSG00000104728|O15013-7|ARHGEF10 MULTI-MSMS UPN48_class_I_Rep_3 7 440.79852294921875 2 440.796946 879.57934 0.039895 1.7586E-05 2.6113 0.0011511 2.6512 0.0011686 440.79927988508325 50.233 1.0278 53.854 53.255 54.283 3.621 99 64 2 0 0 0 0.48414 2 10113 10113;10226 2.3027 0 1 132670 + 50291 18261 31446 31463 57950;57951 57950 0.1347332432201256 VPLAVLVGL 9 Unmodified _VPLAVLVGL_ 0 0 0 REV__nc|ENSG00000104728|O15013-7|ARHGEF10 REV__nc|ENSG00000104728|O15013-7|ARHGEF10 MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.08826 3.8905E-05 3.31 0.001459 3.3982 0.0014979 440.79933606660626 53.767 0.1242 53.767 53.69 53.814 0 -0.058512 0.00060674 NaN 2.3027 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 142360 + 50292 18261 31446 31463 0.1347332432201256 VPLDSPSVEL 10 Unmodified _VPLDSPSVEL_ 0 0 0 ENST00000544855.5_1_4:140211190-140211244:-|nuORF ENST00000544855.5_1_4:140211190-140211244:-|nuORF ENST00000544855.5_1_4:140211190-140211244:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.2847290039062 2 528.284597 1054.55464 0.37024 0.00019559 0.19236 0.00010162 0.5626 0.00029721 528.2845607467435 80.384 0.76563 83.849 83.551 84.317 3.465 165 94 2 0 0 0 0.30832 4 20023 19965;20023;20050;20084 30.637 1.555 1 1743300 50293 7371 31447 31464 57952;57953;57954;57955 57953 0.029545996579599887 VPLDSPSVEL 10 Unmodified _VPLDSPSVEL_ 0 0 0 ENST00000544855.5_1_4:140211190-140211244:-|nuORF ENST00000544855.5_1_4:140211190-140211244:-|nuORF ENST00000544855.5_1_4:140211190-140211244:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 528.2847900390625 2 528.284597 1054.55464 0.39603 0.00020922 0.27027 0.00014278 0.6663 0.000352 528.2845796666414 80.48 0.6698 83.789 83.503 84.173 3.309 149 91 2 0 0 0 0.2133 5 20115 20090;20115;20140;20168;20197 46.021 2.1627 1 1130400 50294 7371 31447 31464 57956;57957;57958;57959;57960 57957 0.029545996579599887 VPLDSPSVEL 10 Unmodified _VPLDSPSVEL_ 0 0 0 ENST00000544855.5_1_4:140211190-140211244:-|nuORF ENST00000544855.5_1_4:140211190-140211244:-|nuORF ENST00000544855.5_1_4:140211190-140211244:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 528.284597 1054.55464 0.23804 0.00012575 0.61126 0.00032292 0.8493 0.00044867 528.2847490933748 80.415 0.38365 83.785 83.614 83.998 3.3694 -0.0022523 0.00018424 NaN 46.021 86 54 2 NaN NaN NaN NaN 0 NaN NaN 0 456680 50295 7371 31447 31464 0.029545996579599887 VPLFFLFG 8 Unmodified _VPLFFLFG_ 0 0 0 REV__ENSG00000114120.14,SLC25A36,chr3,+,I4.1,140959541,140963126|49|8.47|1|intron REV__ENSG00000114120.14,SLC25A36,chr3,+,I4.1,140959541,140963126|49|8.47|1|intron MSMS UPN48_class_I_Rep_1 5 470.275634765625 2 470.270564 938.526576 NaN NaN NaN NaN NaN NaN NaN 53.325 1 56.844 56.344 57.344 3.5192 0 0 0 0.40738 1 11180 11180 0.79363 0 1 + 50296 18522 31448 31465 57961 57961 0.054853662591767716 VPLFIFLEF 9 Unmodified _VPLFIFLEF_ 0 0 0 REV__L1MC5a_dup15236|chr18:21098133-21099461:+|1.306953894077988|0.007439494438706|7.46|151.0|72|2|anti-sense REV__L1MC5a_dup15236|chr18:21098133-21099461:+|1.306953894077988|0.007439494438706|7.46|151.0|72|2|anti-sense MSMS UPN48_class_I_Rep_2 6 562.8218994140625 2 562.823161 1123.63177 NaN NaN NaN NaN NaN NaN NaN 78.642 1 82.264 81.764 82.764 3.6222 0 0 0 0.34056 1 18655 18655 8.5933 0 1 + 50297 27138 31449 31466 57962 57962 0.07489862664942848 VPLFKYKS 8 Unmodified _VPLFKYKS_ 0 0 0 ENSG00000172171|ENST00000581216|TEFM;nc|ENSG00000172171|Q96QE5-4|TEFM ENSG00000172171|ENST00000581216|TEFM ENSG00000172171|ENST00000581216|TEFM MULTI-MSMS UPN48_class_I_Rep_1 5 491.7958984375 2 491.292028 980.569503 0.18619 9.1473E-05 -3.5693 -0.0017535 -3.3831 -0.0016621 491.28913265228385 53.518 1.0287 57.037 56.544 57.573 3.5192 144 73 3 0 0 0 0.82752 1 11112 11112 2.5775 0 1 680260 50298 4564 31450 31467 57963 57963 0.07844136316612094 VPLFTIYLLTS 11 Unmodified _VPLFTIYLLTS_ 0 0 0 L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|73|1|anti-sense L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|73|1|anti-sense L1MC3_dup1244|chr2:100030291-100031923:+|1.1344363006149338|0.0197455315015797|5.84|148.0|73|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 633.3690185546875 2 633.87084 1265.72713 0.63583 0.00040303 -0.69501 -0.00044055 -0.059183 -3.7514E-05 633.8704258919144 87.976 0.31823 91.786 91.53 91.848 3.8104 51 39 2 0 0 0 22.551 1 20882 20882 2.9952 0.26005 1 255230 50299 11307 31451 31468 57964 57964 0.1048917106531917 VPLGGARR 8 Unmodified _VPLGGARR_ 0 0 0 REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 413.2661437988281 2 413.256311 824.49807 -0.098663 -4.0773E-05 0.65046 0.00026881 0.5518 0.00022803 413.25664542605693 71.867 0.79182 75.333 75.057 75.849 3.466 110 74 2 0 0 0 0.82752 1 16846 16846 2.5775 0 1 165980 + 50300 22916 31452 31469 57965 57965 0.07880061402613592 VPLGGARR 8 Unmodified _VPLGGARR_ 0 0 0 REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF MSMS UPN48_class_I_Rep_1 5 413.26617431640625 2 413.256311 824.49807 NaN NaN NaN NaN NaN NaN NaN 73.427 1 76.908 76.408 77.408 3.4812 0 0 0 0.40604 1 17301 17301 2.5775 0 1 + 50301 22916 31452 31469 57966 57966 0.07880061402613592 VPLGGARR 8 Unmodified _VPLGGARR_ 0 0 0 REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 413.256311 824.49807 -0.098663 -4.0773E-05 0.65046 0.00026881 0.5518 0.00022803 413.25664542605693 71.867 0.79182 75.333 75.057 75.849 3.466 0.030981 7.3659E-05 NaN 2.5775 110 74 2 NaN NaN NaN NaN 0 NaN NaN 0 165980 + 50302 22916 31452 31469 0.07880061402613592 VPLGGARR 8 Unmodified _VPLGGARR_ 0 0 0 REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 413.256311 824.49807 0.15147 6.2594E-05 0.44573 0.0001842 0.5972 0.0002468 413.2565633743341 71.745 0.89205 75.272 74.985 75.877 3.5266 -0.030981 -9.5551E-05 NaN 2.5775 122 88 2 NaN NaN NaN NaN 0 NaN NaN 0 158600 + 50303 22916 31452 31469 0.07880061402613592 VPLGGRRA 8 Unmodified _VPLGGRRA_ 0 0 0 REV__ENST00000491929.1_1_13:103452763-103457688:+|nuORF REV__ENST00000491929.1_1_13:103452763-103457688:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 413.2660217285156 2 413.256311 824.49807 0.074437 3.0761E-05 -0.0066425 -2.7451E-06 0.067794 2.8016E-05 413.2562592737129 91.309 0.50914 91.309 90.98 91.489 0 59 45 2 0 0 0 0.82752 1 22029 22029 0.69038 0 1 383170 + 50304 22634 31453 31470 57967 57967 0.07880061402602223 VPLGGRRA 8 Unmodified _VPLGGRRA_ 0 0 0 REV__ENST00000491929.1_1_13:103452763-103457688:+|nuORF REV__ENST00000491929.1_1_13:103452763-103457688:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 413.2560729980469 2 413.256311 824.49807 0.074437 3.0761E-05 -0.0066425 -2.7451E-06 0.067794 2.8016E-05 413.2562592737129 91.309 0.50914 91.309 90.98 91.489 0 59 45 2 0 0 0 0.72333 1 22051 22051 0.69038 0 1 383170 + 50305 22634 31453 31470 57968 57968 0.07880061402602223 VPLGWQLRK 9 Unmodified _VPLGWQLRK_ 0 0 0 REV__ENST00000360467.5_1_13:111009841-111009886:+|nuORF REV__ENST00000360467.5_1_13:111009841-111009886:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 548.8348999023438 2 548.834926 1095.6553 0.060242 3.3063E-05 0.029903 1.6412E-05 0.090145 4.9475E-05 548.8348905168555 26.664 0.2927 26.664 26.51 26.802 0 39 22 2 0 0 0 0.50088 1 3855 3855 0.52476 0 1 301910 + 50306 21896 31454 31471 57969 57969 0.11129721222141598 VPLHHGNAPAH 11 Unmodified _VPLHHGNAPAH_ 0 0 0 HSMAR2_dup450|chr4:107628991-107630282:+|1.574530820373857|0.2018091805651216|2.96|151.0|18|2|sense HSMAR2_dup450|chr4:107628991-107630282:+|1.574530820373857|0.2018091805651216|2.96|151.0|18|2|sense HSMAR2_dup450|chr4:107628991-107630282:+|1.574530820373857|0.2018091805651216|2.96|151.0|18|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 574.7968139648438 2 575.299239 1148.58392 0.36637 0.00021077 -3.0254 -0.0017405 -2.659 -0.0015297 575.2972511840886 74.296 0.061714 77.69 77.674 77.735 3.3937 5 4 2 0 0 0 22.551 1 18291 18291 1.4819 0.79152 1 34568 50307 8436 31455 31472 57970 57970 0.015576015174701752 VPLHLLRIV 9 Unmodified _VPLHLLRIV_ 0 0 0 L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|101|1|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|101|1|anti-sense L1PA14_dup392|chr2:157390087-157392749:-|2.192758318198225|0.0504967521318627|5.44|151.0|101|1|anti-sense MSMS UPN47_class_I_Rep_2 3 530.3536987304688 2 530.355494 1058.69644 NaN NaN NaN NaN NaN NaN NaN 93.449 1 96.917 96.417 97.417 3.4687 0 0 0 0.40038 1 23060 23060 0.6015 0 1 50308 13857 31456 31473 57971 57971 0.16943482261581266 VPLIEPAA 8 Unmodified _VPLIEPAA_ 0 0 0 REV__Tigger3_dup73|chr1:247884858-247885729:-|1.0975876874808397|0.0317529080092405|5.11|149.0|25|3|sense REV__Tigger3_dup73|chr1:247884858-247885729:-|1.0975876874808397|0.0317529080092405|5.11|149.0|25|3|sense MSMS UPN47_class_I_Rep_2 3 405.2403564453125 2 405.242004 808.469455 NaN NaN NaN NaN NaN NaN NaN 77.63 1 80.962 80.462 81.462 3.3315 0 0 0 0.40746 1 19266 19266 0.69038 0 1 + 50309 32705 31457 31474 57972 57972 0.057558989827953155 VPLIEYSFY 9 Unmodified _VPLIEYSFY_ 0 0 0 ENST00000434918.6_1_2:162888774-162891808:-|nuORF;ENSG00000197635|ENST00000360534|DPP4 ENST00000434918.6_1_2:162888774-162891808:-|nuORF ENST00000434918.6_1_2:162888774-162891808:-|nuORF MSMS UPN47_class_I_Rep_2 3 566.270751953125 2 565.792058 1129.56956 NaN NaN NaN NaN NaN NaN NaN 29.525 1 33.017 32.517 33.517 3.4923 0 0 0 0.40038 1 4741 4741 0.6015 0 1 50310 5380 31458 31475 57973 57973 0.009960915259625835 VPLILDSF 8 Unmodified _VPLILDSF_ 0 0 0 nc|ENSG00000179443|Q8NH95|OR13C6P;nc|ENSG00000243641|P0DN81|OR13C7 nc|ENSG00000179443|Q8NH95|OR13C6P nc|ENSG00000179443|Q8NH95|OR13C6P MSMS UPN48_class_I_Rep_3 7 452.26300048828125 2 452.262936 902.51132 NaN NaN NaN NaN NaN NaN NaN 59.294 1 62.817 62.317 63.317 3.5231 0 0 0 0.40604 1 12929 12929 2.5775 0 1 50311 16764 31459 31476 57974 57974 0.0561645467132621 VPLKASIT 8 Unmodified _VPLKASIT_ 0 0 0 REV__L1PA16_dup7649|chr9:85864562-85866830:+|2.3224133599193557|0.2480594062318663|3.23|151.0|16|1|sense REV__L1PA16_dup7649|chr9:85864562-85866830:+|2.3224133599193557|0.2480594062318663|3.23|151.0|16|1|sense MSMS UPN47_class_I_Rep_2 3 414.7616271972656 2 414.763104 827.511654 NaN NaN NaN NaN NaN NaN NaN 80.305 1 83.674 83.174 84.174 3.3694 0 0 0 0.40738 1 20003 20003 0.79363 0 1 + 50312 29410 31460 31477 57975 57975 0.09099874391165486 VPLKLHRIK 9 Unmodified _VPLKLHRIK_ 0 0 0 ENST00000372927.5_2_X:100356228-100357313:+|nuORF ENST00000372927.5_2_X:100356228-100357313:+|nuORF ENST00000372927.5_2_X:100356228-100357313:+|nuORF MSMS UPN48_class_I_Rep_1 5 552.2918090820312 2 552.374218 1102.73388 NaN NaN NaN NaN NaN NaN NaN 62.391 1 65.854 65.354 66.354 3.4625 0 0 0 0.4029 1 13959 13959 0 0 1 50313 6406 31461 31478 57976 57976 0.18662573527194581 VPLLCLFLC 9 Unmodified _VPLLCLFLC_ 0 0 0 REV__L1M2_dup5225|chrX:41178417-41179603:-|1.193166496839302|0.0158496088480588|6.23|149.0|61|2|anti-sense REV__L1M2_dup5225|chrX:41178417-41179603:-|1.193166496839302|0.0158496088480588|6.23|149.0|61|2|anti-sense MSMS UPN47_class_I_Rep_2 3 510.7841796875 2 510.784667 1019.55478 NaN NaN NaN NaN NaN NaN NaN 43.158 1 46.516 46.016 47.016 3.358 0 0 0 0.381 1 8874 8874 5.2307 0 1 + 50314 24219 31462 31479 57977 57977 0.0457860485259971 VPLLFLHL 8 Unmodified _VPLLFLHL_ 0 0 0 THE1B_dup1172|chr1:198878213-198878568:+|3.026832536771904|0.0076903140246154|8.62|150.0|9|2|sense THE1B_dup1172|chr1:198878213-198878568:+|3.026832536771904|0.0076903140246154|8.62|150.0|9|2|sense THE1B_dup1172|chr1:198878213-198878568:+|3.026832536771904|0.0076903140246154|8.62|150.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 476.3061218261719 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 65.347 1 65.347 64.847 65.847 0 0 0 0 0.40738 1 14765 14765 0.79363 0 1 50315 32877 31463 31480 57978 57978 0.11805030558900853 VPLLHGPPIQP 11 Unmodified _VPLLHGPPIQP_ 0 0 0 REV__ENSG00000196428.12,TSC22D2,chr3,+,I1.1,150411309,150423038|41|8.63|3|intron REV__ENSG00000196428.12,TSC22D2,chr3,+,I1.1,150411309,150423038|41|8.63|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 584.3480834960938 2 584.347866 1166.68118 0.29624 0.00017311 0.30864 0.00018035 0.60488 0.00035346 584.3479180430639 31.386 0.11327 31.386 31.373 31.486 0 16 8 3 0 0 0 0.67113 1 5240 5240 1.3295 0.80477 1 1112000 + 50316 21039 31464 31481 57979 57979 0.10450570673765469 VPLLHGPPIQP 11 Unmodified _VPLLHGPPIQP_ 0 0 0 REV__ENSG00000196428.12,TSC22D2,chr3,+,I1.1,150411309,150423038|41|8.63|3|intron REV__ENSG00000196428.12,TSC22D2,chr3,+,I1.1,150411309,150423038|41|8.63|3|intron MULTI-MSMS UPN46_class_I_Rep_3 1 584.3473510742188 2 584.347866 1166.68118 0.30964 0.00018094 0.20873 0.00012197 0.51838 0.00030291 584.3478809493563 32.046 0.07682 32.046 31.976 32.053 0 9 5 2 0 0 0 0.57992 1 5422 5422 5.7319 0.50118 1 246550 + 50317 21039 31464 31481 57980 57980 0.10450570673765469 VPLLIHLLKV 10 Unmodified _VPLLIHLLKV_ 0 0 0 REV__L1M2a_dup186|chr7:37693465-37694454:-|1.4904981594051157|0.0225873585716648|6.04|151.0|18|3|sense REV__L1M2a_dup186|chr7:37693465-37694454:-|1.4904981594051157|0.0225873585716648|6.04|151.0|18|3|sense MSMS UPN47_class_I_Rep_1 2 572.8924560546875 2 572.894452 1143.77435 NaN NaN NaN NaN NaN NaN NaN 12.877 1 16.327 15.827 16.827 3.45 0 0 0 0.53105 1 177 177 0.40072 0 1 + 50318 24259 31465 31482 57981 57981 0.20821495126961054 VPLLLLLLLL 10 Unmodified _VPLLLLLLLL_ 0 0 0 ENST00000565192.1_1_6:31022106-31024293:+|nuORF;nc|ENSG00000228789|E2RYF7|HCG22 ENST00000565192.1_1_6:31022106-31024293:+|nuORF ENST00000565192.1_1_6:31022106-31024293:+|nuORF MSMS UPN46_class_I_Rep_3 1 560.4097900390625 2 560.409404 1118.80425 NaN NaN NaN NaN NaN NaN NaN 89.781 1 89.781 89.281 90.281 0 0 0 0 0.53105 1 21617 21617 0 0 1 50319 7483 31466 31483 57982 57982 0.2496043407234083 VPLLLTLI 8 Unmodified _VPLLLTLI_ 0 0 0 ENST00000251343.9_1_14:24906506-24906650:+|nuORF ENST00000251343.9_1_14:24906506-24906650:+|nuORF ENST00000251343.9_1_14:24906506-24906650:+|nuORF MSMS UPN46_class_I_Rep_3 1 441.3070983886719 2 441.307147 880.599741 NaN NaN NaN NaN NaN NaN NaN 51.107 1 51.107 50.607 51.607 0 0 0 0 0.39167 1 10839 10839 11.114 0 1 50320 5917 31467 31484 57983 57983 0.1546649498179704 VPLLLVWI 8 Unmodified _VPLLLVWI_ 0 0 0 REV__ENST00000564160.1_1_16:2722719-2722887:-|nuORF REV__ENST00000564160.1_1_16:2722719-2722887:-|nuORF MSMS UPN48_class_I_Rep_1 5 476.8146057128906 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 22.869 1 26.429 25.929 26.929 3.5605 0 0 0 0.40738 1 2294 2294 0.79363 0 1 + 50321 22528 31468 31485 57984 57984 0.13798201218685335 VPLLTPGF 8 Unmodified _VPLLTPGF_ 0 0 0 REV__ENSG00000089820|ENST00000350060|ARHGAP4 REV__ENSG00000089820|ENST00000350060|ARHGAP4 MULTI-SECPEP UPN48_class_I_Rep_3 7 421.8234558105469 2 422.252372 842.49019 0.11117 4.694E-05 -2.4297 -0.0010259 -2.3185 -0.00097901 422.25150434863156 110.95 0.055603 114.62 114.6 114.66 3.6654 9 6 2 0 0 0 0.72333 1 26322 26322 2.5775 0 1 78804 + 50322 18009 31469 31486 57985 57985 0.06264489362479253 VPLLTPGF 8 Unmodified _VPLLTPGF_ 0 0 0 REV__ENSG00000089820|ENST00000350060|ARHGAP4 REV__ENSG00000089820|ENST00000350060|ARHGAP4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 422.252372 842.49019 -0.34539 -0.00014584 -2.1943 -0.00092653 -2.5396 -0.0010724 422.2514002040227 111.09 0.1884 114.61 114.59 114.77 3.5271 -0.0032976 9.48E-06 NaN 2.5775 47 27 2 NaN NaN NaN NaN 0 NaN NaN 0 628430 + 50323 18009 31469 31486 0.06264489362479253 VPLLVRSCDP 10 Unmodified _VPLLVRSCDP_ 0 0 0 L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|316|2|anti-sense;L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|211|1|anti-sense;L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|377|3|anti-sense;L1PA4_dup1406|chr2:148421133-148423896:+|2.292015084793098|0.1111520483162419|4.37|151.0|117|2|anti-sense;L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|90|1|anti-sense;L1PA7_dup1981|chr3:17448954-17451626:+|1.8772659223457784|0.0364858968986374|5.69|151.0|88|1|anti-sense;L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|313|2|anti-sense;L1P3_dup1908|chr9:104703168-104708881:+|1.0705218537557866|0.0258126102006601|5.37|151.0|270|2|anti-sense;L1P3_dup2646|chr12:9845175-9850042:-|1.222746642244923|0.1670852435825995|2.87|151.0|180|1|anti-sense;L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|136|1|anti-sense;L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|224|1|anti-sense;L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|361|3|anti-sense;L1PA7_dup2847|chr4:3160921-3167073:-|2.1945740924008588|0.0676330690593875|5.02|151.0|277|2|anti-sense;L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|293|2|anti-sense;L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|101|1|anti-sense;L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|239|1|anti-sense;L1P1_dup1953|chrX:77822281-77823307:-|1.3211989543096472|0.3054762641840194|2.11|151.0|35|1|anti-sense;L1PA7_dup12101|chr17:31177164-31179597:+|1.8555916459166475|0.0654683912978589|4.82|151.0|96|1|anti-sense;L1PA7_dup9044|chrY:19684952-19690849:-|1.512563644508915|0.2811678382239637|2.43|96.0|363|3|anti-sense;L1PA7_dup6942|chr8:109214407-109219470:-|2.5621848410158155|0.1233702517209148|4.38|151.0|287|3|anti-sense;L1PA7_dup3425|chr4:101128453-101130944:+|1.1575833761581302|0.0394656744373881|4.87|151.0|77|1|anti-sense;L1PA7_dup1456|chr2:148308519-148314103:-|1.6947298308557943|0.0409475371695847|5.37|151.0|318|3|anti-sense;L1PA7_dup3436|chr4:102272656-102279158:+|3.234059321603815|0.2516294841391464|3.68|151.0|317|2|anti-sense;L1PA6_dup5120|chr14:53084652-53090883:+|2.2489804312719115|0.4887622297950577|2.2|151.0|363|3|anti-sense;L1PA6_dup497|chr2:15316250-15322384:+|2.133365787077294|0.067297961701994|4.99|151.0|359|3|anti-sense;L1PA6_dup4218|chr10:87897805-87903981:-|14.443863885524832|0.2764723588335993|5.71|151.0|232|1|anti-sense;L1PA6_dup3464|chrX:110229539-110232609:+|2.7407605846191823|0.0856771470393122|5.0|151.0|107|1|anti-sense;L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|317|2|anti-sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|316|2|anti-sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|316|2|anti-sense MSMS UPN48_class_I_Rep_1 5 549.8032836914062 2 549.802434 1097.59032 NaN NaN NaN NaN NaN NaN NaN 101.38 1 104.99 104.49 105.49 3.612 0 0 0 0.53105 1 24473 24473 1.6526 0 1 50324 13474 31470 31487 57986 57986 0.045423586339666144 VPLPGPPM 8 Unmodified _VPLPGPPM_ 0 0 0 MER52C_dup304|chr15:34186202-34187495:+|1.1067031627186918|0.0230967578205485|5.58|151.0|21|3|sense MER52C_dup304|chr15:34186202-34187495:+|1.1067031627186918|0.0230967578205485|5.58|151.0|21|3|sense MER52C_dup304|chr15:34186202-34187495:+|1.1067031627186918|0.0230967578205485|5.58|151.0|21|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 404.58251953125 2 404.2253 806.436046 -0.11418 -4.6156E-05 -1.1337 -0.00045829 -1.2479 -0.00050444 404.2247117425105 33.734 0.098152 33.734 33.68 33.778 0 11 9 2 0 0 0 0.72333 1 5942 5942 0.79363 0 1 34898 50325 16105 31471 31488 57987 57987 0.025085739392579853 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 426.29461669921875 2 425.791664 849.568775 -0.038808 -1.6524E-05 -0.29555 -0.00012584 -0.33436 -0.00014237 425.78996132100684 67.945 0.75521 71.309 70.74 71.495 3.3646 130 60 3 0 0 0 0.82752 3 16259 16259;16316;16377 0 0 1 348760 50326 12979 31472 31489 57988;57989;57990 57988 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 426.294677734375 2 425.791664 849.568775 -0.52711 -0.00022444 -1.3587 -0.00057854 -1.8859 -0.00080298 425.7903016447425 70.681 0.3473 73.963 73.679 74.026 3.2828 77 33 3 0 0 0 0.82752 1 17197 17197 0 0 1 511420 50327 12979 31472 31489 57991 57991 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 426.29437255859375 2 425.791664 849.568775 -0.5362 -0.00022831 -0.11976 -5.0992E-05 -0.65596 -0.0002793 425.79019413640066 69.099 0.52038 72.303 71.992 72.512 3.2044 76 40 3 0 0 0 0.82752 1 16792 16792 0 0 1 113700 50328 12979 31472 31489 57992 57992 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 425.7901306152344 2 425.791664 849.568775 -0.53433 -0.00022751 -1.2395 -0.00052776 -1.7738 -0.00075527 425.79036641292566 70.425 0.21899 73.636 73.523 73.742 3.2113 41 20 3 0 0 0 0.82752 1 17228 17228 0 0 1 227380 50329 12979 31472 31489 57993 57993 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MSMS UPN47_class_I_Rep_3 4 425.7899169921875 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 85.838 1 89.209 88.709 89.709 3.3716 0 0 0 0.40738 1 21508 21508 0.79363 0 1 50330 12979 31472 31489 57994 57994 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 425.7901611328125 2 425.791664 849.568775 -0.54548 -0.00023226 -0.48515 -0.00020657 -1.0306 -0.00043883 425.79043638830814 65.541 1.163 68.721 68.288 69.451 3.1795 136 78 3 0 0 0 0.72333 1 15725 15725 0 0 1 319920 50331 12979 31472 31489 57995 57995 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MSMS UPN48_class_I_Rep_2 6 425.7901306152344 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 84.086 1 87.78 87.28 88.28 3.6937 0 0 0 0.40738 1 20007 20007 0.79363 0 1 50332 12979 31472 31489 57996 57996 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 425.791664 849.568775 -0.56935 -0.00024243 -1.1119 -0.00047343 -1.6812 -0.00071586 425.7904102900272 65.535 0.59667 68.791 68.326 68.923 3.2556 0.035307 -0.00033322 NaN 0 64 43 2 NaN NaN NaN NaN 0 NaN NaN 0 476240 50333 12979 31472 31489 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 425.791664 849.568775 -0.54206 -0.0002308 0.40561 0.00017271 -0.13645 -5.8098E-05 425.79028645387626 68.904 0.43129 72.173 71.98 72.411 3.2696 -0.064799 0.00016824 NaN 0 61 36 2 NaN NaN NaN NaN 0 NaN NaN 0 82101 50334 12979 31472 31489 0.13797341667554974 VPLPIKAI 8 Unmodified _VPLPIKAI_ 0 0 0 L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|83|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 425.791664 849.568775 0.09352 3.982E-05 -2.3802 -0.0010135 -2.2866 -0.00097363 425.79008493876586 67.76 0.089554 71.257 71.205 71.294 3.4964 -0.026142 -0.0016754 NaN 0 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 78401 50335 12979 31472 31489 0.13797341667554974 VPLPLLSILY 10 Unmodified _VPLPLLSILY_ 0 0 0 L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|115|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|115|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_1 2 564.3587646484375 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 71.767 1 75.142 74.642 75.642 3.3751 0 0 0 0.53105 1 17519 17519 1.8442 0 1 50336 11291 31473 31490 57997 57997 0.14190107244803585 VPLPLLSILY 10 Unmodified _VPLPLLSILY_ 0 0 0 L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|115|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|115|3|anti-sense L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.3589477539062 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 67.281 1 70.545 70.045 71.045 3.2636 0 0 0 0.53105 1 16217 16217 1.8442 0 1 50337 11291 31473 31490 57998 57998 0.14190107244803585 VPLRFLAP 8 Unmodified _VPLRFLAP_ 0 0 0 REV__ENST00000413379.7_1_19:47712635-47712935:+|nuORF REV__ENST00000413379.7_1_19:47712635-47712935:+|nuORF MSMS UPN47_class_I_Rep_3 4 456.7848815917969 2 456.786913 911.559273 NaN NaN NaN NaN NaN NaN NaN 21.109 1 24.459 23.959 24.959 3.3496 0 0 0 0.40738 1 2305 2305 0.79363 0 1 + 50338 22201 31474 31491 57999 57999 0.09995573382025214 VPLRKLSS 8 Unmodified _VPLRKLSS_ 0 0 0 REV__ENSG00000142871|ENST00000451137|CCN1 REV__ENSG00000142871|ENST00000451137|CCN1 MSMS UPN48_class_I_Rep_3 7 450.7412109375 2 450.287277 898.560001 NaN NaN NaN NaN NaN NaN NaN 66.48 1 69.988 69.488 70.488 3.5077 0 0 0 0.40604 1 15102 15102 2.5775 0 1 + 50339 19419 31475 31492 58000 58000 0.10666368031081674 VPLRKLYAPL 10 Unmodified _VPLRKLYAPL_ 0 0 0 REV__ENSG00000145354|ENST00000273986|CISD2 REV__ENSG00000145354|ENST00000273986|CISD2 MSMS UPN48_class_I_Rep_2 6 585.37451171875 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 33.681 1 37.341 36.841 37.841 3.6607 0 0 0 0.53105 1 5345 5345 0.45834 0 1 + 50340 19511 31476 31493 58001 58001 0.1555973408749196 VPLSTTPRF 9 Unmodified _VPLSTTPRF_ 0 0 0 ENST00000244751.6_1_6:36807381-36807510:-|nuORF ENST00000244751.6_1_6:36807381-36807510:-|nuORF ENST00000244751.6_1_6:36807381-36807510:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 508.7864990234375 2 509.290017 1016.56548 -0.078996 -4.0232E-05 1.3676 0.00069649 1.2886 0.00065626 509.79340425020814 23.842 0.045383 23.842 23.826 23.871 0 5 4 2 0 0 0 0.12477 1 3059 3059 1.6526 0.85899 1 44775 50341 5905 31477 31494 58002 58002 0.05786046822890967 VPLSTVVLM 9 Unmodified _VPLSTVVLM_ 0 0 0 Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|18|2|sense Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|18|2|sense Charlie1a_dup5578|chr20:47606229-47607177:+|1.1469760527367894|0.0128168206092412|6.48|151.0|18|2|sense MSMS UPN47_class_I_Rep_2 3 479.78765869140625 2 479.785721 957.55689 NaN NaN NaN NaN NaN NaN NaN 45.934 1 49.288 48.788 49.788 3.3534 0 0 0 0.39428 1 9726 9726 2.0598 0 1 50342 486 31478 31495 58003 58003 0.076413568620751 VPLTIPLK 8 Unmodified _VPLTIPLK_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|80|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|80|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|80|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7992858886719 2 440.796946 879.57934 -0.41953 -0.00018493 2.3942 0.0010553 1.9746 0.00087041 440.79949028206283 47.353 0.73021 50.702 50.188 50.918 3.3492 88 48 2 0 0 0 0.82752 1 10189 10189 0.79363 0 1 109780 50343 8145 31479 31496 58004 58004 0.1347332432200119 VPLTIPLK 8 Unmodified _VPLTIPLK_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|80|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|80|3|sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|80|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79962158203125 2 440.796946 879.57934 -0.46761 -0.00020612 2.8897 0.0012738 2.4221 0.0010677 440.79943856066467 46.786 0.57869 50.03 49.833 50.412 3.2439 65 35 2 0 0 0 0.82752 1 10079 10079 0.79363 0 1 93117 50344 8145 31479 31496 58005 58005 0.1347332432200119 VPLTLLLI 8 Unmodified _VPLTLLLI_ 0 0 0 REV__LTR78_dup1674|chr5:76532629-76533245:-|1.0015664908719888|0.0057066650098643|7.46|151.0|31|2|anti-sense REV__LTR78_dup1674|chr5:76532629-76533245:-|1.0015664908719888|0.0057066650098643|7.46|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_3 4 441.2973937988281 2 441.307147 880.599741 NaN NaN NaN NaN NaN NaN NaN 47.069 1 50.313 49.813 50.813 3.2439 0 0 0 0.40738 1 10126 10126 0.79363 0 1 + 50345 31006 31480 31497 58006 58006 0.15466494981819778 VPLVGLLVGY 10 Unmodified _VPLVGLLVGY_ 0 0 0 nc|ENSG00000126903|P09131-2|SLC10A3;ENSG00000126903|ENST00000651600|SLC10A3 nc|ENSG00000126903|P09131-2|SLC10A3 nc|ENSG00000126903|P09131-2|SLC10A3 MSMS UPN46_class_I_Rep_3 1 515.321533203125 2 515.320786 1028.62702 NaN NaN NaN NaN NaN NaN NaN 20.26 1 20.26 19.76 20.76 0 0 0 0 0.53105 1 2075 2075 0.45834 0 1 50346 2557 31481 31498 58007 58007 0.11384978522187339 VPLVNILL 8 Unmodified _VPLVNILL_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 441.2973937988281 2 440.796946 879.57934 -0.21344 -9.4084E-05 2.307 0.0010169 2.0936 0.00092285 440.79948583329804 45.925 0.9873 49.625 49.242 50.23 3.6999 92 60 2 0 0 0 0.72333 1 9849 9849 11.114 0 1 91675 + 50347 23824 31482 31499 58008 58008 0.1347332432198982 VPLVNILL 8 Unmodified _VPLVNILL_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7991027832031 2 440.796946 879.57934 -0.51917 -0.00022885 4.2147 0.0018578 3.6956 0.001629 440.79961554249644 46.166 0.97872 49.41 48.593 49.572 3.2441 98 58 2 0 0 0 0.82752 1 9894 9894 11.114 0 1 208100 + 50348 23824 31482 31499 58009 58009 0.1347332432198982 VPLVNILL 8 Unmodified _VPLVNILL_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.8003845214844 2 440.796946 879.57934 -0.48876 -0.00021544 3.7085 0.0016347 3.2198 0.0014193 440.79959715850646 46.438 0.29549 49.681 49.572 49.867 3.2439 30 19 2 0 0 0 0.82752 1 9903 9903 11.114 0 1 113890 + 50349 23824 31482 31499 58010 58010 0.1347332432198982 VPLVNILL 8 Unmodified _VPLVNILL_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 441.2979431152344 2 440.796946 879.57934 -0.46761 -0.00020612 2.8897 0.0012738 2.4221 0.0010677 440.79943856066467 46.786 0.57869 50.03 49.833 50.412 3.2439 65 35 2 0 0 0 0.72333 1 10034 10034 11.114 0 1 93117 + 50350 23824 31482 31499 58011 58011 0.1347332432198982 VPLVNILL 8 Unmodified _VPLVNILL_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 440.796946 879.57934 0.031185 1.3746E-05 1.9139 0.00084366 1.9451 0.00085741 440.79939292356477 46.414 0.6326 50.164 49.897 50.53 3.7494 0.1007 -0.00041366 NaN 11.114 59 39 2 NaN NaN NaN NaN 0 NaN NaN 0 126340 + 50351 23824 31482 31499 0.1347332432198982 VPLVNILL 8 Unmodified _VPLVNILL_ 0 0 0 REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense REV__HERVK9-int_dup524|chr12:94356896-94358740:+|1.8219643193606256|0.0332307180980944|5.78|151.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 440.796946 879.57934 0.069435 3.0607E-05 2.6954 0.0011881 2.7649 0.0012187 440.7993443354854 46.358 0.42223 49.995 49.852 50.274 3.6369 -0.067808 0.00027528 NaN 11.114 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 144150 + 50352 23824 31482 31499 0.1347332432198982 VPLVVARK 8 Unmodified _VPLVVARK_ 0 0 0 REV__L1PA3_dup7470|chr10:31469211-31475223:+|2.8106536720210755|0.1884756112212745|3.9|151.0|48|2|sense REV__L1PA3_dup7470|chr10:31469211-31475223:+|2.8106536720210755|0.1884756112212745|3.9|151.0|48|2|sense MSMS UPN46_class_I_Rep_3 1 441.3071594238281 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 51.366 1 51.366 50.866 51.866 0 0 0 0 0.4032 1 10913 10913 6.3541 0 1 + 50353 29494 31483 31500 58012 58012 0.14075262273365752 VPLWLLRY 8 Unmodified _VPLWLLRY_ 0 0 0 nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM nc|ENSG00000023909|P48507-2|GCLM nc|ENSG00000023909|P48507-2|GCLM MSMS UPN46_class_I_Rep_3 1 530.3238525390625 2 530.32112 1058.62769 NaN NaN NaN NaN NaN NaN NaN 51.908 1 51.908 51.408 52.408 0 0 0 0 0.4032 1 11064 11064 6.3541 0.59368 1 50354 817 31484 31501 58013 58013 0.10071817961897978 VPMFHLLE 8 Unmodified _VPMFHLLE_ 0 0 0 ENST00000547526.1_1_12:57910914-57914246:-|nuORF ENST00000547526.1_1_12:57910914-57914246:-|nuORF ENST00000547526.1_1_12:57910914-57914246:-|nuORF MSMS UPN48_class_I_Rep_3 7 493.262939453125 2 493.262413 984.510274 NaN NaN NaN NaN NaN NaN NaN 67.017 1 70.525 70.025 71.025 3.5077 0 0 0 0.40738 1 15267 15267 0.79363 0 1 50355 7385 31485 31502 58014 58014 0.017399170307953682 VPMFRNVSL 9 Oxidation (M) _VPM(Oxidation (M))FRNVSL_ VPM(1)FRNVSL VPM(50)FRNVSL 0 0 1 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN47_class_I_Rep_1 2 539.7894287109375 2 539.789327 1077.5641 0.30162 0.00016281 -0.61023 -0.00032939 -0.30861 -0.00016658 539.7887963157224 51.75 0.92741 55.343 54.779 55.706 3.5932 121 52 3 0 0 0 0.048662 1 11470 11470 49.554 20.473 1 314110 50356 1234 31486 31503 58015 58015 37 0.028420894624787252 VPMFRNVSL 9 Oxidation (M) _VPM(Oxidation (M))FRNVSL_ VPM(1)FRNVSL VPM(58)FRNVSL 0 0 1 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN47_class_I_Rep_2 3 539.7891845703125 2 539.789327 1077.5641 0.46862 0.00025296 -0.9146 -0.00049369 -0.44598 -0.00024074 539.7886407662285 52.109 0.99675 55.442 54.841 55.837 3.3332 97 66 2 0 0 0 0.028995 1 11538 11538 57.722 21.595 1 386870 50357 1234 31486 31503 58016 58016 37 0.028420894624787252 VPMFRNVSL 9 Oxidation (M) _VPM(Oxidation (M))FRNVSL_ VPM(1)FRNVSL VPM(42)FRNVSL 0 0 1 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS UPN47_class_I_Rep_3 4 539.7893676757812 2 539.789327 1077.5641 0.4979 0.00026876 -0.79079 -0.00042686 -0.29289 -0.0001581 539.788659483946 52.246 1.3036 55.451 54.911 56.215 3.2055 169 97 3 0 0 0 0.066364 1 11766 11766 41.956 12.874 1 293120 50358 1234 31486 31503 58017 58017 37 0.028420894624787252 VPMHGKIL 8 Unmodified _VPMHGKIL_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS UPN46_class_I_Rep_3 1 447.76556396484375 2 447.765123 893.515694 0.17776 7.9597E-05 0.90035 0.00040315 1.0781 0.00048274 447.7654120356312 85.162 0.17656 85.162 85.112 85.289 0 39 19 3 0 0 0 0.82752 1 20302 20302 2.5775 0.27475 1 877440 50359 4981 31487 31504 58018 58018 0.06467640613254844 VPMHGKIL 8 Unmodified _VPMHGKIL_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 447.765123 893.515694 0.01877 8.4048E-06 1.1648 0.00052153 1.1835 0.00052994 447.76557756756006 81.603 0.58363 85.165 84.917 85.501 3.5624 -0.0073062 4.8456E-05 NaN 2.5775 111 68 2 NaN NaN NaN NaN 0 NaN NaN 0 274070 50360 4981 31487 31504 0.06467640613254844 VPMHGKIL 8 Unmodified _VPMHGKIL_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 447.765123 893.515694 0.14024 6.2796E-05 1.0991 0.00049212 1.2393 0.00055492 447.7655113813203 81.536 0.34898 85.193 85.099 85.448 3.6567 0.020934 -1.0371E-05 NaN 2.5775 62 42 2 NaN NaN NaN NaN 0 NaN NaN 0 596730 50361 4981 31487 31504 0.06467640613254844 VPMHGKIL 8 Unmodified _VPMHGKIL_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 447.765123 893.515694 0.19369 8.673E-05 1.1081 0.00049619 1.3018 0.00058292 447.765468588675 81.484 0.36667 85.169 84.944 85.31 3.685 -0.0034913 -2.242E-06 NaN 2.5775 77 48 2 NaN NaN NaN NaN 0 NaN NaN 0 633580 50362 4981 31487 31504 0.06467640613254844 VPMKPLIDY 9 Unmodified _VPMKPLIDY_ 0 0 0 REV__L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|9|1|sense REV__L1M4b_dup1|chr1:837512-840216:+|1.1808981152803928|0.3412525703862415|1.79|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 538.2944946289062 2 538.296453 1074.57835 NaN NaN NaN NaN NaN NaN NaN 71.787 1 75.253 74.753 75.753 3.466 0 0 0 0.39598 1 16808 16808 1.6526 0.17072 1 + 50363 24528 31488 31505 58019 58019 0.0440474189078941 VPMLFLVV 8 Unmodified _VPMLFLVV_ 0 0 0 REV__L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|232|3|anti-sense REV__L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|232|3|anti-sense MSMS UPN46_class_I_Rep_3 1 459.2699279785156 2 459.280075 916.545597 NaN NaN NaN NaN NaN NaN NaN 43.522 1 43.522 43.022 44.022 0 0 0 0 0.40738 1 8697 8697 0.79363 0 1 + 50364 30070 31489 31506 58020 58020 0.08398579558581787 VPMLFPPL 8 Unmodified _VPMLFPPL_ 0 0 0 REV__MER21C_dup2952|chr9:88417241-88417460:-|1.103564604554502|0.1618286565316746|2.77|150.0|14|2|anti-sense REV__MER21C_dup2952|chr9:88417241-88417460:-|1.103564604554502|0.1618286565316746|2.77|150.0|14|2|anti-sense MSMS UPN46_class_I_Rep_3 1 457.26422119140625 2 457.264425 912.514297 NaN NaN NaN NaN NaN NaN NaN 75.284 1 75.284 74.784 75.784 0 0 0 0 0.40738 1 17496 17496 0.79363 0 1 + 50365 31229 31490 31507 58021 58021 0.054540065244850666 VPMLHYRL 8 Unmodified _VPMLHYRL_ 0 0 0 REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.7882080078125 2 514.78913 1027.56371 0.094391 4.8591E-05 0.25779 0.00013271 0.35218 0.0001813 514.789232046216 49.238 0.92247 52.897 52.525 53.448 3.6592 138 64 3 0 0 0 0.82752 2 10633 10633;10821 8.5933 0 1 328460 + 50366 28910 31491 31508 58022;58023 58022 0.05102714533290964 VPMLHYRL 8 Unmodified _VPMLHYRL_ 0 0 0 REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.789794921875 2 514.78913 1027.56371 0.071518 3.6817E-05 0.28392 0.00014616 0.35544 0.00018298 514.7893087118115 49.658 0.9586 53.001 52.54 53.499 3.3431 130 59 3 0 0 0 0.82752 1 10908 10908 13.508 0 1 249410 + 50367 28910 31491 31508 58024 58024 0.05102714533290964 VPMLHYRL 8 Unmodified _VPMLHYRL_ 0 0 0 REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense MSMS UPN47_class_I_Rep_2 3 514.7881469726562 2 514.78913 1027.56371 NaN NaN NaN NaN NaN NaN NaN 50.3 1 53.643 53.143 54.143 3.3431 0 0 0 0.39819 1 11044 11044 8.5933 0 1 + 50368 28910 31491 31508 58025 58025 0.05102714533290964 VPMLHYRL 8 Unmodified _VPMLHYRL_ 0 0 0 REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense REV__L1P4_dup296|chr2:58102227-58105547:+|2.698767182910093|0.0439014494044596|5.94|151.0|115|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.7896118164062 2 514.78913 1027.56371 0.3104 0.00015979 0.071459 3.6786E-05 0.38186 0.00019658 514.7892114255341 49.812 1.0825 53.038 52.64 53.723 3.2262 126 59 3 0 0 0 0.82752 2 10909 10909;11092 8.5933 0 1 292290 + 50369 28910 31491 31508 58026;58027 58026 0.05102714533290964 VPNIKLAKCLV 11 Unmodified _VPNIKLAKCLV_ 0 0 0 ENSG00000157224|ENST00000496677|CLDN12 ENSG00000157224|ENST00000496677|CLDN12 ENSG00000157224|ENST00000496677|CLDN12 MSMS UPN47_class_I_Rep_2 3 599.3727416992188 2 599.373026 1196.7315 NaN NaN NaN NaN NaN NaN NaN 91.021 1 94.482 93.982 94.982 3.4613 0 0 0 0.38417 1 22550 22550 0 0 1 50370 3757 31492 31509 58028 58028 0.1410035700721437 VPNIQRAA 8 Unmodified _VPNIQRAA_ 0 0 0 nc|ENSG00000153291|O95847-2|SLC25A27;ENSG00000153291|ENST00000371347|SLC25A27 nc|ENSG00000153291|O95847-2|SLC25A27 nc|ENSG00000153291|O95847-2|SLC25A27 MSMS UPN46_class_I_Rep_3 1 434.69842529296875 2 434.753601 867.49265 NaN NaN NaN NaN NaN NaN NaN 115.97 1 115.97 115.47 116.47 0 0 0 0 0.40746 1 28694 28694 0.69038 0 1 50371 3643 31493 31510 58029 58029 0.0536033782012737 VPNKGVKA 8 Unmodified _VPNKGVKA_ 0 0 0 THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_2 3 406.7533264160156 2 406.75307 811.491587 NaN NaN NaN NaN NaN NaN NaN 33.083 1 36.537 36.037 37.037 3.4547 0 0 0 0.40625 1 5815 5815 2.3027 0 1 50372 32934 31494 31511 58030 58030 0.07830123451230975 VPNKGVKA 8 Unmodified _VPNKGVKA_ 0 0 0 THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_2 3 406.75286865234375 2 406.75307 811.491587 NaN NaN NaN NaN NaN NaN NaN 33.247 1 36.689 36.189 37.189 3.4424 0 0 0 0.40625 1 5865 5865 2.3027 0 1 50373 32934 31494 31511 58031 58031 0.07830123451230975 VPNKGVKA 8 Unmodified _VPNKGVKA_ 0 0 0 THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense THE1C_dup7167|chr12:9679996-9680367:+|1.2346834530511617|0.3701595746090953|1.74|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_3 4 406.7527770996094 2 406.75307 811.491587 NaN NaN NaN NaN NaN NaN NaN 33.366 1 36.641 36.141 37.141 3.2748 0 0 0 0.40625 1 5938 5938 2.3027 0 1 50374 32934 31494 31511 58032 58032 0.07830123451230975 VPNKPNFTF 9 Unmodified _VPNKPNFTF_ 0 0 0 PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|94|2|anti-sense PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|94|2|anti-sense PABL_A-int_dup393|chr19:41553404-41554973:-|1.1245222748245978|0.0677905844629734|4.05|150.0|94|2|anti-sense MSMS UPN48_class_I_Rep_2 6 532.2680053710938 2 532.282192 1062.54983 NaN NaN NaN NaN NaN NaN NaN 59.593 1 63.079 62.579 63.579 3.4868 0 0 0 0.26661 1 13087 13087 12.532 0 1 50375 16884 31495 31512 58033 58033 0.02105760305835247 VPNKRWNL 8 Unmodified _VPNKRWNL_ 0 0 0 REV__nc|ENSG00000183690|Q5JST6-2|EFHC2 REV__nc|ENSG00000183690|Q5JST6-2|EFHC2 MSMS UPN48_class_I_Rep_2 6 513.5072631835938 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 36.071 1 39.758 39.258 40.258 3.6877 0 0 0 0.40746 1 6024 6024 0.69038 0 1 + 50376 20794 31496 31513 58034 58034 0.0652828863690047 VPNVKLLGYP 10 Unmodified _VPNVKLLGYP_ 0 0 0 MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|37|3|anti-sense MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|37|3|anti-sense MER77B_dup382|chr5:78076558-78077095:+|1.770382468057576|0.013186965026407|7.07|151.0|37|3|anti-sense MSMS UPN48_class_I_Rep_1 5 550.3275756835938 2 550.329142 1098.64373 NaN NaN NaN NaN NaN NaN NaN 58.306 1 61.793 61.293 62.293 3.487 0 0 0 0.53105 1 12710 12710 1.8442 1.0506 1 50377 16214 31497 31514 58035 58035 0.09835479408138781 VPPHLANFLN 10 Unmodified _VPPHLANFLN_ 0 0 0 AluJr_dup9756|chr2:101280836-101281063:+|1.328567923349742|0.3594840134604433|1.89|151.0|12|1|anti-sense AluJr_dup9756|chr2:101280836-101281063:+|1.328567923349742|0.3594840134604433|1.89|151.0|12|1|anti-sense AluJr_dup9756|chr2:101280836-101281063:+|1.328567923349742|0.3594840134604433|1.89|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 561.3052978515625 2 561.308741 1120.60293 NaN NaN NaN NaN NaN NaN NaN 44.643 1 48.157 47.657 48.657 3.5132 0 0 0 0.53105 1 8522 8522 3.2813 0 1 50378 189 31498 31515 58036 58036 0.047451380885149774 VPPIHFSETS 10 Unmodified _VPPIHFSETS_ 0 0 0 REV__L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|28|1|anti-sense REV__L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|28|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.2827758789062 2 557.282389 1112.55022 0.32167 0.00017926 0.10849 6.0462E-05 0.43017 0.00023972 557.2823519163537 42.53 0.64404 46.172 45.822 46.467 3.6415 86 50 2 0 0 0 0.53654 1 7738 7738 7.2892 0 1 157950 + 50379 26538 31499 31516 58037 58037 -0.001548647649542545 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7994384765625 2 440.796946 879.57934 0.13141 5.7923E-05 3.2731 0.0014428 3.4045 0.0015007 440.7993789773842 75.703 0.45361 75.703 75.473 75.927 0 72 46 2 0 0 0 0.82752 1 17558 17558 0.69038 0 1 142300 50380 16236 31500 31517 58038 58038 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.8000183105469 2 440.796946 879.57934 0.14963 6.5955E-05 1.9671 0.00086711 2.1168 0.00093307 440.79941622440015 81.683 0.50628 81.683 81.432 81.938 0 78 50 2 0 0 0 0.82752 1 19319 19319 0.69038 0 1 128310 50381 16236 31500 31517 58039 58039 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7998046875 2 440.796946 879.57934 0.16143 7.116E-05 3.2863 0.0014486 3.4478 0.0015198 440.7993596505774 92.592 0.48956 92.592 92.219 92.708 0 76 51 2 0 0 0 0.82752 1 22324 22324 0.69038 0 1 214200 50382 16236 31500 31517 58040 58040 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7994079589844 2 440.796946 879.57934 0.16164 7.125E-05 2.1079 0.00092914 2.2695 0.0010004 440.79927219438355 97.047 0.20367 97.047 96.947 97.15 0 33 23 2 0 0 0 0.82752 1 23624 23624 0.69038 0 1 195170 50383 16236 31500 31517 58041 58041 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7996826171875 2 440.796946 879.57934 -0.41212 -0.00018166 3.5648 0.0015713 3.1526 0.0013897 440.79959863844033 28.147 0.63185 31.913 31.679 32.31 3.7662 79 49 2 0 0 0 0.82752 1 4377 4377 0.69038 0 1 114620 50384 16236 31500 31517 58042 58042 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79998779296875 2 440.796946 879.57934 -0.40624 -0.00017907 3.1419 0.0013849 2.7357 0.0012059 440.79963490272775 29.709 1.1249 33.467 33.021 34.146 3.7578 119 81 2 0 0 0 0.82752 1 4939 4939 0.69038 0 1 103230 50385 16236 31500 31517 58043 58043 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7989501953125 2 440.796946 879.57934 -0.38851 -0.00017125 1.933 0.00085208 1.5445 0.00068083 440.79921332486566 34.748 0.68932 38.434 37.841 38.531 3.6859 71 53 2 0 0 0 0.82752 1 6257 6257 0.69038 0 1 76087 50386 16236 31500 31517 58044 58044 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7995300292969 2 440.796946 879.57934 -0.16414 -7.2354E-05 2.4594 0.0010841 2.2952 0.0010117 440.7993320611319 47.921 0.47992 51.603 51.334 51.814 3.6819 48 28 2 0 0 0 0.82752 1 10326 10326 0.69038 0 1 130820 50387 16236 31500 31517 58045 58045 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7991638183594 2 440.796946 879.57934 0.01508 6.6472E-06 2.5507 0.0011243 2.5658 0.001131 440.79927144315917 70.03 0.44365 73.401 73.11 73.553 3.3713 61 41 2 0 0 0 0.82752 1 16992 16992 0.69038 0 1 144850 50388 16236 31500 31517 58046 58046 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7992858886719 2 440.796946 879.57934 -0.3345 -0.00014745 2.7918 0.0012306 2.4573 0.0010832 440.79947529374124 68.427 0.62878 71.697 71.375 72.004 3.2696 75 55 2 0 0 0 0.82752 1 16531 16531 0.69038 0 1 118790 50389 16236 31500 31517 58047 58047 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7997741699219 2 440.796946 879.57934 -0.34561 -0.00015234 3.2893 0.0014499 2.9437 0.0012976 440.79951343678425 67.965 0.50095 71.163 70.859 71.36 3.1977 58 40 2 0 0 0 0.82752 1 16476 16476 0.69038 0 1 116180 50390 16236 31500 31517 58048 58048 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.79925537109375 2 440.796946 879.57934 0.042831 1.888E-05 3.4482 0.00152 3.4911 0.0015389 440.79940900247624 48.74 0.36702 52.457 52.311 52.678 3.7175 37 23 2 0 0 0 0.82752 1 9778 9778 0.69038 0 1 162530 50391 16236 31500 31517 58049 58049 0.1347332432198982 VPPKILTL 8 Unmodified _VPPKILTL_ 0 0 0 MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MLT1A_dup4116|chr7:92629721-92630106:-|2.074658848012698|0.010366916502753|7.64|150.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 440.7802429199219 2 440.796946 879.57934 0.15872 6.9961E-05 2.268 0.00099973 2.4267 0.0010697 440.7991813449222 52.321 0.38907 55.96 55.869 56.259 3.639 47 31 2 0 0 0 0.72333 1 10886 10886 0.69038 0 1 128050 50392 16236 31500 31517 58050 58050 0.1347332432198982 VPPKMKRG 8 Unmodified _VPPKMKRG_ 0 0 0 ENST00000505924.5_1_3:129546636-129546918:-|nuORF;ENSG00000172765|ENST00000393238|TMCC1 ENST00000505924.5_1_3:129546636-129546918:-|nuORF ENST00000505924.5_1_3:129546636-129546918:-|nuORF MSMS UPN47_class_I_Rep_2 3 456.77655029296875 2 456.776022 911.537492 NaN NaN NaN NaN NaN NaN NaN 113.7 1 117.21 116.71 117.71 3.5109 0 0 0 0.40798 1 27663 27663 0 0 1 50393 4590 31501 31518 58051 58051 0.07818445361829163 VPPKVTVT 8 Unmodified _VPPKVTVT_ 0 0 0 REV__nc|ENSG00000141664|Q9C0B9-2|ZCCHC2 REV__nc|ENSG00000141664|Q9C0B9-2|ZCCHC2 MSMS UPN48_class_I_Rep_1 5 420.7647705078125 2 420.763104 839.511654 NaN NaN NaN NaN NaN NaN NaN 74.819 1 78.309 77.809 78.809 3.49 0 0 0 0.40604 1 17696 17696 2.5775 1.7838 1 + 50394 19388 31502 31519 58052 58052 0.08547874391183541 VPPLFLLI 8 Unmodified _VPPLFLLI_ 0 0 0 HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|62|1|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|62|1|sense HERV9-int_dup95|chr6:16456271-16462617:+|4.4019753844709095|0.1065936057734042|5.37|151.0|62|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 456.3177490234375 2 456.301865 910.589176 -0.35061 -0.00015998 -1.1079 -0.00050553 -1.4585 -0.00066551 456.30139607892994 35.848 0.088776 39.525 39.501 39.59 3.6762 8 5 2 0 0 0 0.72333 1 6641 6641 2.8892 0 1 30594 50395 8084 31503 31520 58053 58053 0.13030512327384258 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MSMS UPN46_class_I_Rep_3 1 432.30029296875 2 432.301865 862.589176 NaN NaN NaN NaN NaN NaN NaN 26.988 1 26.988 26.488 27.488 0 0 0 0 0.40798 1 3943 3943 0 0 1 50396 7715 31504 31521 58054 58054 0.15238512327357512 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MSMS UPN47_class_I_Rep_3 4 432.30047607421875 2 432.301865 862.589176 NaN NaN NaN NaN NaN NaN NaN 108.49 1 112.03 111.53 112.53 3.5382 0 0 0 0.40798 1 26562 26562 0 0 1 50397 7715 31504 31521 58055 58055 0.15238512327357512 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 432.3014831542969 2 432.301865 862.589176 0.093049 4.0225E-05 -2.2731 -0.00098266 -2.18 -0.00094244 432.30081911148335 107.8 0.23264 111.48 111.36 111.59 3.6783 34 24 2 0 0 0 0.82752 1 25511 25511 0 0 1 11746000 50398 7715 31504 31521 58056 58056 0.15238512327357512 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 432.301865 862.589176 0.13768 5.9521E-05 1.8055 0.00078051 1.9432 0.00084003 432.30324945320586 107.97 0.054382 111.61 111.57 111.63 3.6355 0.11387 0.0030611 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 258280 50399 7715 31504 31521 0.15238512327357512 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 432.301865 862.589176 -0.21815 -9.4307E-05 -1.5742 -0.00068053 -1.7924 -0.00077484 432.30118771538355 107.79 0.193 111.33 111.15 111.34 3.5345 -0.16375 0.00013901 NaN 0 42 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3017100 50400 7715 31504 31521 0.15238512327357512 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 432.301865 862.589176 -0.38348 -0.00016578 -1.6674 -0.00072084 -2.0509 -0.00088662 432.30115211118135 108.02 0.327 111.56 111.3 111.63 3.5382 0.063883 5.8397E-05 NaN 0 56 37 2 NaN NaN NaN NaN 0 NaN NaN 0 5851400 50401 7715 31504 31521 0.15238512327357512 VPPLLLVI 8 Unmodified _VPPLLLVI_ 0 0 0 ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense ERV3-16A3_I-int_dup943|chr2:224827741-224829433:+|2.5461680439479744|0.0801653457964567|4.99|151.0|47|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 432.301865 862.589176 0.093049 4.0225E-05 -2.2731 -0.00098266 -2.18 -0.00094244 432.30081911148335 107.8 0.23264 111.48 111.36 111.59 3.6783 -0.014008 -0.00046525 NaN 0 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 11746000 50402 7715 31504 31521 0.15238512327357512 VPPLMKGGMQ 10 Unmodified _VPPLMKGGMQ_ 0 0 0 LTR1D_dup14|chr1:246219081-246220045:+|1.101500721299389|0.023814176316491|5.53|151.0|47|3|anti-sense LTR1D_dup14|chr1:246219081-246220045:+|1.101500721299389|0.023814176316491|5.53|151.0|47|3|anti-sense LTR1D_dup14|chr1:246219081-246220045:+|1.101500721299389|0.023814176316491|5.53|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_2 3 529.2705688476562 2 529.28028 1056.54601 NaN NaN NaN NaN NaN NaN NaN 60.468 1 63.734 63.234 64.234 3.2654 0 0 0 0.53105 1 14151 14151 6.2058 0.47393 1 50403 15592 31505 31522 58057 58057 0.019996312161310925 VPPLSWLDLK 10 Unmodified _VPPLSWLDLK_ 0 0 0 REV__ENSG00000135655|ENST00000280377|USP15 REV__ENSG00000135655|ENST00000280377|USP15 MULTI-MSMS UPN48_class_I_Rep_1 5 584.3424072265625 2 584.342249 1166.66995 0.51854 0.000303 -0.073883 -4.3173E-05 0.44465 0.00025983 584.3421670474555 57.76 0.90209 61.254 60.95 61.852 3.4942 130 63 3 0 0 0 0.43106 1 12593 12593 17.113 0.96379 1 559080 + 50404 19149 31506 31523 58058 58058 0.09327748579585204 VPPPRGRP 8 Unmodified _VPPPRGRP_ 0 0 0 L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense MSMS UPN47_class_I_Rep_1 2 438.26397705078125 2 438.264136 874.51372 NaN NaN NaN NaN NaN NaN NaN 107.55 1 111.22 110.72 111.72 3.6724 0 0 0 0.40404 1 26353 26353 5.2307 2.3415 1 50405 15035 31507 31524 58059 58059 0.07144347919654592 VPPPRGRP 8 Unmodified _VPPPRGRP_ 0 0 0 L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense L1PB1_dup12392|chr19:44124003-44127567:-|1.283105762249769|0.198512155437643|2.69|151.0|82|3|sense MSMS UPN48_class_I_Rep_1 5 438.2639465332031 2 438.264136 874.51372 NaN NaN NaN NaN NaN NaN NaN 107.53 1 111.16 110.66 111.66 3.6313 0 0 0 0.39819 1 25918 25918 8.5933 3.3626 1 50406 15035 31507 31524 58060 58060 0.07144347919654592 VPPPVLHW 8 Unmodified _VPPPVLHW_ 0 0 0 LTR71A_dup28|chr3:5149404-5149820:-|1.0700871952907602|0.0261423736753527|5.36|151.0|23|2|anti-sense LTR71A_dup28|chr3:5149404-5149820:-|1.0700871952907602|0.0261423736753527|5.36|151.0|23|2|anti-sense LTR71A_dup28|chr3:5149404-5149820:-|1.0700871952907602|0.0261423736753527|5.36|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 472.77093505859375 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 23.734 1 27.503 27.003 28.003 3.769 0 0 0 0.40738 1 2649 2649 0.79363 0 1 50407 15704 31508 31525 58061 58061 0.053950003479371844 VPPPVLHW 8 Unmodified _VPPPVLHW_ 0 0 0 LTR71A_dup28|chr3:5149404-5149820:-|1.0700871952907602|0.0261423736753527|5.36|151.0|23|2|anti-sense LTR71A_dup28|chr3:5149404-5149820:-|1.0700871952907602|0.0261423736753527|5.36|151.0|23|2|anti-sense LTR71A_dup28|chr3:5149404-5149820:-|1.0700871952907602|0.0261423736753527|5.36|151.0|23|2|anti-sense MSMS UPN48_class_I_Rep_3 7 472.77117919921875 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 47.335 1 50.972 50.472 51.472 3.6363 0 0 0 0.40738 1 9279 9279 0.79363 0 1 50408 15704 31508 31525 58062 58062 0.053950003479371844 VPPQGEPVFSG 11 Unmodified _VPPQGEPVFSG_ 0 0 0 REV__L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|85|1|anti-sense REV__L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|85|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.2819213867188 2 557.282389 1112.55022 0.46493 0.0002591 0.20334 0.00011332 0.66827 0.00037242 557.2823194089707 47.198 0.54317 50.72 50.45 50.994 3.5219 67 35 3 0 0 0 0.52578 1 9292 9292 7.1017 0 1 286900 + 50409 29840 31509 31526 58063 58063 -0.001548647649542545 VPPQGEPVFSG 11 Unmodified _VPPQGEPVFSG_ 0 0 0 REV__L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|85|1|anti-sense REV__L1PA6_dup1351|chr3:196380507-196382833:+|1.1133633554309037|0.0425452376205379|4.71|151.0|85|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.7847290039062 2 557.282389 1112.55022 0.32863 0.00018314 0.16159 9.0054E-05 0.49022 0.00027319 557.2825385635035 47.138 0.49949 50.774 50.479 50.978 3.6363 58 36 2 0 0 0 0.65821 1 9257 9257 2.4985 0 1 211930 + 50410 29840 31509 31526 58064 58064 -0.001548647649542545 VPPQIIRR 8 Unmodified _VPPQIIRR_ 0 0 0 MER1B_dup2269|chr6:150986431-150986708:-|1.0517670805854986|0.0133566685440049|6.3|150.0|13|2|anti-sense MER1B_dup2269|chr6:150986431-150986708:-|1.0517670805854986|0.0133566685440049|6.3|150.0|13|2|anti-sense MER1B_dup2269|chr6:150986431-150986708:-|1.0517670805854986|0.0133566685440049|6.3|150.0|13|2|anti-sense MSMS UPN47_class_I_Rep_3 4 489.80621337890625 2 489.813993 977.613434 NaN NaN NaN NaN NaN NaN NaN 70.422 1 73.633 73.133 74.133 3.2113 0 0 0 0.40746 1 17225 17225 0.69038 0 1 50411 15812 31510 31527 58065 58065 0.12373165533620067 VPPQLLLIK 9 Unmodified _VPPQLLLIK_ 0 0 0 REV__AluJo_dup11170|chr2:196159312-196159613:-|1.7045235669132883|0.0242942432397795|6.13|151.0|17|2|anti-sense REV__AluJo_dup11170|chr2:196159312-196159613:-|1.7045235669132883|0.0242942432397795|6.13|151.0|17|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.78289794921875 2 510.844428 1019.6743 0.32067 0.00016381 0.37862 0.00019342 0.69929 0.00035723 511.348555494797 114.76 0.030655 118.42 118.4 118.43 3.6616 4 2 2 0 0 0 0.50582 1 27441 27441 0 0 1 12019 + 50412 16978 31511 31528 58066 58066 0.1652525779319376 VPPTRGNY 8 Unmodified _VPPTRGNY_ 0 0 0 THE1B_dup3582|chr3:33547117-33547486:+|2.537492698489147|0.3855356795885497|2.72|151.0|24|2|anti-sense THE1B_dup3582|chr3:33547117-33547486:+|2.537492698489147|0.3855356795885497|2.72|151.0|24|2|anti-sense THE1B_dup3582|chr3:33547117-33547486:+|2.537492698489147|0.3855356795885497|2.72|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_3 4 452.23876953125 2 452.237784 902.461016 NaN NaN NaN NaN NaN NaN NaN 16.547 1 19.909 19.409 20.409 3.3619 0 0 0 0.40604 1 1052 1052 2.5775 0 1 50413 32883 31512 31529 58067 58067 0.005883450661826828 VPPTTARR 8 Unmodified _VPPTTARR_ 0 0 0 ENST00000404241.6_1_22:39917553-39917825:+|nuORF ENST00000404241.6_1_22:39917553-39917825:+|nuORF ENST00000404241.6_1_22:39917553-39917825:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 449.26666259765625 2 449.266876 896.519199 0.18109 8.1356E-05 -0.39137 -0.00017583 -0.21028 -9.4474E-05 449.26664902107126 84.946 0.3369 84.946 84.792 85.129 0 56 31 3 0 0 0 0.82752 1 20234 20234 4.3292 0 1 701540 50414 6606 31513 31530 58068 58068 0.06680026711467235 VPPTTKKE 8 Unmodified _VPPTTKKE_ 0 0 0 HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|95|3|sense HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|95|3|sense HERVL-int_dup7|chr1:12392564-12395953:-|2.5965431182849024|0.0786943060097756|5.04|151.0|95|3|sense MSMS UPN46_class_I_Rep_3 1 450.2650451660156 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 45.882 1 45.882 45.382 46.382 0 0 0 0 0.40472 1 9365 9365 4.3292 1.44 1 50415 8383 31514 31531 58069 58069 0.05906669040234647 VPPTVYHGVE 10 Unmodified _VPPTVYHGVE_ 0 0 0 L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|107|3|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|107|3|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|107|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2847900390625 2 549.284931 1096.55531 0.34028 0.00018691 -0.14232 -7.8177E-05 0.19795 0.00010873 549.284841103378 39.337 0.59811 42.993 42.805 43.403 3.6557 74 53 2 0 0 0 0.54078 1 6932 6932 6.7232 0 1 105550 50416 11723 31515 31532 58070 58070 0.010894390976545765 VPPVRPLPA 9 Unmodified _VPPVRPLPA_ 0 0 0 ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron MSMS UPN46_class_I_Rep_3 1 473.2994079589844 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 107.12 1 107.12 106.62 107.62 0 0 0 0 0.34056 1 26133 26133 8.5933 0.68312 1 50417 1723 31516 31533 58071 58071 0.10622958410749561 VPPVRPLPA 9 Unmodified _VPPVRPLPA_ 0 0 0 ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron ENSG00000105229.7,PIAS4,chr19,+,I4.1,4018737,4024035|29|6.18|3|intron MSMS UPN48_class_I_Rep_1 5 473.2992248535156 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 103.09 1 106.7 106.2 107.2 3.6164 0 0 0 0.34056 1 24850 24850 8.5933 3.3626 1 50418 1723 31516 31533 58072 58072 0.10622958410749561 VPPWWFYL 8 Unmodified _VPPWWFYL_ 0 0 0 L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|121|2|anti-sense L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|121|2|anti-sense L1MA2_dup1713|chr4:73171223-73173422:+|2.3450385720471743|0.0392369619483552|5.9|151.0|121|2|anti-sense MSMS UPN46_class_I_Rep_3 1 554.2872924804688 2 554.286746 1106.55894 NaN NaN NaN NaN NaN NaN NaN 47.391 1 47.391 46.891 47.891 0 0 0 0 0.40738 1 9795 9795 0.79363 0 1 50419 9345 31517 31534 58073 58073 0.00992153662173223 VPPYIFQIY 9 Unmodified _VPPYIFQIY_ 0 0 0 MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|18|2|anti-sense MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|18|2|anti-sense MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2903442382812 2 570.310418 1138.60628 NaN NaN NaN NaN NaN NaN NaN 67.395 1 70.586 70.086 71.086 3.1914 0 0 0 0.381 1 16316 16316 5.2307 0.47466 1 50420 16134 31518 31535 58074 58074 0.0425238814250406 VPPYLQFSF 9 Unmodified _VPPYLQFSF_ 0 0 0 Tigger7_dup379|chr2:127268765-127269201:-|1.673463900319275|0.1879655745012772|3.15|151.0|11|3|sense Tigger7_dup379|chr2:127268765-127269201:-|1.673463900319275|0.1879655745012772|3.15|151.0|11|3|sense Tigger7_dup379|chr2:127268765-127269201:-|1.673463900319275|0.1879655745012772|3.15|151.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 549.2850952148438 2 549.286943 1096.55933 NaN NaN NaN NaN NaN NaN NaN 38.786 1 42.516 42.016 43.016 3.7297 0 0 0 0.32573 1 6802 6802 9.3831 0.63772 1 50421 33457 31519 31536 58075 58075 0.014915285913730258 VPQKIKERTKK 11 Unmodified _VPQKIKERTKK_ 0 0 0 REV__ENST00000240316.4_1_17:55027977-55028133:-|nuORF REV__ENST00000240316.4_1_17:55027977-55028133:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 451.77264404296875 3 452.289149 1353.84562 -0.53133 -0.00024031 -0.84045 -0.00038013 -1.3718 -0.00062044 452.2887323338835 13.213 0.34896 16.601 16.495 16.844 3.388 74 37 3 0 0 0 22.551 1 302 302 0.094841 0.011491 1 98585 + 50422 21506 31520 31537 58076 58076 0.18284963093674378 VPQKKGKL 8 Unmodified _VPQKKGKL_ 0 0 0 ENST00000438918.1_1_2:204637659-204638058:-|nuORF ENST00000438918.1_1_2:204637659-204638058:-|nuORF ENST00000438918.1_1_2:204637659-204638058:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 449.2972106933594 2 449.297645 896.580737 0.015347 6.8953E-06 0.28181 0.00012662 0.29715 0.00013351 449.2974243487315 42.884 0.11181 46.394 46.375 46.487 3.5103 9 7 2 0 0 0 0.82752 1 7996 7996 0.69038 0 1 43500 50423 6766 31521 31538 58077 58077 0.1283095841076829 VPQLVLFLCIP 11 Unmodified _VPQLVLFLCIP_ 0 0 0 REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|69|1|anti-sense REV__L1MA4A_dup43|chr1:35524711-35526256:-|1.8450383569436075|0.4225143531226738|2.13|151.0|69|1|anti-sense MSMS UPN46_class_I_Rep_3 1 621.2335815429688 2 621.369952 1240.72535 NaN NaN NaN NaN NaN NaN NaN 64.86 1 64.86 64.36 65.36 0 0 0 0 0.38417 1 14629 14629 1.4819 0.95714 1 + 50424 25306 31522 31539 58078 58078 0.11461838775721844 VPQQVKHR 8 Unmodified _VPQQVKHR_ 0 0 0 L1MB5_dup8508|chr18:45855895-45856582:+|1.341979841015648|0.2283991939585809|2.55|151.0|25|3|sense L1MB5_dup8508|chr18:45855895-45856582:+|1.341979841015648|0.2283991939585809|2.55|151.0|25|3|sense L1MB5_dup8508|chr18:45855895-45856582:+|1.341979841015648|0.2283991939585809|2.55|151.0|25|3|sense MSMS UPN47_class_I_Rep_3 4 496.29473876953125 2 496.293425 990.572297 NaN NaN NaN NaN NaN NaN NaN 15.256 1 18.621 18.121 19.121 3.3659 0 0 0 0.40746 1 744 744 0.69038 0 1 50425 10657 31523 31540 58079 58079 0.0766340449413292 VPQRKSKK 8 Unmodified _VPQRKSKK_ 0 0 0 ENST00000261798.9_1_5:148872814-148873015:-|nuORF ENST00000261798.9_1_5:148872814-148873015:-|nuORF ENST00000261798.9_1_5:148872814-148873015:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 486.3175354003906 2 485.811451 969.608348 0.29394 0.0001428 3.1261 0.0015187 3.4201 0.0016615 485.8116239754483 68.522 0.33759 72.031 71.861 72.199 3.5094 35 26 2 0 0 0 0.82752 1 15688 15688 0.6015 0 1 123070 50426 5961 31524 31541 58080 58080 0.12232861670997863 VPQRVRIKM 9 Unmodified _VPQRVRIKM_ 0 0 0 REV__LTR23_dup530|chr10:909958-910372:+|2.3498814106457595|0.3133453058383108|2.91|151.0|22|2|anti-sense REV__LTR23_dup530|chr10:909958-910372:+|2.3498814106457595|0.3133453058383108|2.91|151.0|22|2|anti-sense MSMS UPN46_class_I_Rep_3 1 563.84912109375 2 563.84751 1125.68047 NaN NaN NaN NaN NaN NaN NaN 81.896 1 81.896 81.396 82.396 0 0 0 0 0.4007 1 19367 19367 0.52476 0 1 + 50427 30880 31525 31542 58081 58081 0.12265452753058526 VPRERIEALR 10 Unmodified _VPRERIEALR_ 0 0 0 MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 619.8694458007812 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 86.423 1 89.864 89.364 90.364 3.4407 0 0 0 0.53105 1 21496 21496 1.4819 0.15237 1 50428 15900 31526 31543 58082 58082 0.11614974819917734 VPRERIEALR 10 Unmodified _VPRERIEALR_ 0 0 0 MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 619.8699951171875 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 85.228 1 88.834 88.334 89.334 3.6059 0 0 0 0.53105 1 20381 20381 1.4819 0 1 50429 15900 31526 31543 58083 58083 0.11614974819917734 VPRERIEALR 10 Unmodified _VPRERIEALR_ 0 0 0 MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 619.8702392578125 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 87.924 1 91.651 91.151 92.151 3.7279 0 0 0 0.53105 1 20925 20925 1.4819 0 1 50430 15900 31526 31543 58084 58084 0.11614974819917734 VPRERIEALR 10 Unmodified _VPRERIEALR_ 0 0 0 MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MER21C_dup3647|chr11:102410974-102411741:+|1.80073736102349|0.0742515380202404|4.6|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 619.8692626953125 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 87.838 1 91.648 91.148 92.148 3.8104 0 0 0 0.53105 1 20844 20844 1.4819 0 1 50431 15900 31526 31543 58085 58085 0.11614974819917734 VPRGQRRR 8 Unmodified _VPRGQRRR_ 0 0 0 ENST00000261537.6_1_18:19426917-19426992:+|nuORF ENST00000261537.6_1_18:19426917-19426992:+|nuORF ENST00000261537.6_1_18:19426917-19426992:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 512.3133544921875 2 512.81539 1023.61623 0.18327 9.3985E-05 -0.068769 -3.5266E-05 0.1145 5.872E-05 513.3169757730005 51.932 0.30713 55.53 55.475 55.782 3.5979 50 36 2 0 0 0 0.72333 1 10679 10679 0.79363 0 1 435300 50432 5960 31527 31544 58086 58086 0.10536433711126847 VPRGSWRRT 9 Unmodified _VPRGSWRRT_ 0 0 0 ENST00000323977.7_1_11:94224128-94226034:-|nuORF ENST00000323977.7_1_11:94224128-94226034:-|nuORF ENST00000323977.7_1_11:94224128-94226034:-|nuORF MSMS UPN48_class_I_Rep_1 5 557.813720703125 2 557.815056 1113.61556 NaN NaN NaN NaN NaN NaN NaN 101.15 1 104.77 104.27 105.27 3.612 0 0 0 0.39518 1 24422 24422 1.8442 0 1 50433 6161 31528 31545 58087 58087 0.06329594271414862 VPRGVSYKL 9 Unmodified _VPRGVSYKL_ 0 0 0 REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF MSMS UPN48_class_I_Rep_2 6 509.80352783203125 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 75.406 1 78.996 78.496 79.496 3.59 0 0 0 0.4007 1 17781 17781 0.52476 0.52476 1 + 50434 22573 31529 31546 58088 58088 0.08902039576844345 VPRGVSYKL 9 Unmodified _VPRGVSYKL_ 0 0 0 REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF MSMS UPN48_class_I_Rep_3 7 509.8039855957031 2 509.805834 1017.59712 NaN NaN NaN NaN NaN NaN NaN 75.554 1 79.12 78.62 79.62 3.5659 0 0 0 0.39518 1 17755 17755 1.8442 1.1539 1 + 50435 22573 31529 31546 58089 58089 0.08902039576844345 VPRHAKPP 8 Unmodified _VPRHAKPP_ 0 0 0 REV__ENST00000484157.5_1_1:155107991-155108063:+|nuORF REV__ENST00000484157.5_1_1:155107991-155108063:+|nuORF MSMS UPN47_class_I_Rep_1 2 451.2708435058594 2 451.271961 900.52937 NaN NaN NaN NaN NaN NaN NaN 72.54 1 75.92 75.42 76.42 3.3799 0 0 0 0.40625 1 17756 17756 2.3027 0 1 + 50436 22591 31530 31547 58090 58090 0.07512634436693588 VPRHLRGRR 9 Unmodified _VPRHLRGRR_ 0 0 0 nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-3|STIM2 nc|ENSG00000109689|Q9P246-3|STIM2 MSMS UPN48_class_I_Rep_1 5 573.7410278320312 2 573.85759 1145.70063 NaN NaN NaN NaN NaN NaN NaN 68.409 1 71.861 71.361 72.361 3.4517 0 0 0 0.40038 1 15794 15794 0.6015 0 1 50437 1906 31531 31548 58091 58091 0.13360384527891256 VPRIFKFANR 10 Unmodified _VPRIFKFANR_ 0 0 0 REV__L1MD_dup505|chr1:211805517-211805977:+|1.203034762829189|0.025327924611205|5.57|151.0|3|1|sense REV__L1MD_dup505|chr1:211805517-211805977:+|1.203034762829189|0.025327924611205|5.57|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 624.3731079101562 2 624.372207 1246.72986 0.60987 0.00038078 -0.11672 -7.2879E-05 0.49314 0.0003079 624.3719845766632 91.655 0.56226 95.116 94.831 95.393 3.4613 158 84 2 0 0 0 0.56333 1 22725 22725 1.4819 0 1 3376900 + 50438 27274 31532 31549 58092 58092 0.11636484033510897 VPRILWVQLQ 10 Unmodified _VPRILWVQLQ_ 0 0 0 Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|113|3|anti-sense Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|113|3|anti-sense Tigger1_dup4467|chr5:146473012-146474976:+|3.615877619625154|0.4148522693487749|3.12|151.0|113|3|anti-sense MSMS UPN48_class_I_Rep_3 7 626.3799438476562 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 102.39 1 106.17 105.67 106.67 3.776 0 0 0 0.53105 1 24196 24196 0.40072 0 1 50439 33099 31533 31550 58093 58093 0.1345823497345009 VPRKIKHG 8 Unmodified _VPRKIKHG_ 0 0 0 L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 467.80126953125 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 81.186 1 84.674 84.174 85.174 3.4874 0 0 0 0.40798 1 20254 20254 0 0 1 50440 10274 31534 31551 58094 58094 0.11776896362141542 VPRKIKHG 8 Unmodified _VPRKIKHG_ 0 0 0 L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 467.80108642578125 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 90.872 1 94.562 94.062 95.062 3.6899 0 0 0 0.40798 1 22692 22692 0 0 1 50441 10274 31534 31551 58095 58095 0.11776896362141542 VPRKIKHG 8 Unmodified _VPRKIKHG_ 0 0 0 L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 467.8009338378906 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 73.648 1 76.885 76.385 77.385 3.2363 0 0 0 0.40798 1 18201 18201 0 0 1 50442 10274 31534 31551 58096 58096 0.11776896362141542 VPRKIKHG 8 Unmodified _VPRKIKHG_ 0 0 0 L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 467.8011169433594 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 82.227 1 85.564 85.064 86.064 3.337 0 0 0 0.40798 1 20605 20605 0 0 1 50443 10274 31534 31551 58097 58097 0.11776896362141542 VPRKIKHG 8 Unmodified _VPRKIKHG_ 0 0 0 L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 467.6300354003906 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 88.17 1 91.557 91.057 92.057 3.3873 0 0 0 0.40798 1 22112 22112 0 0 1 50444 10274 31534 31551 58098 58098 0.11776896362141542 VPRKIKHG 8 Unmodified _VPRKIKHG_ 0 0 0 L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense L1MB2_dup7068|chr15:91943084-91943688:-|1.1721108775029017|0.00905188855088|7.02|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 467.7079772949219 2 467.800886 933.587219 NaN NaN NaN NaN NaN NaN NaN 96.79 1 100.2 99.704 100.7 3.414 0 0 0 0.40798 1 23996 23996 0 0 1 50445 10274 31534 31551 58099 58099 0.11776896362141542 VPRKPVKH 8 Unmodified _VPRKPVKH_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MSMS UPN47_class_I_Rep_3 4 480.80712890625 2 480.808711 959.602869 NaN NaN NaN NaN NaN NaN NaN 34.516 1 37.78 37.28 38.28 3.2639 0 0 0 0.40746 1 6283 6283 0.69038 0 1 50446 5336 31535 31552 58100 58100 0.12145182879180538 VPRKTFPLPL 10 Unmodified _VPRKTFPLPL_ 0 0 0 ENSG00000116704.8,SLC35D1,chr1,-,I7.1,67042329,67047264|26|6.4|1|intron;ENSG00000116704.8,SLC35D1,chr1,-,I7.1,67042329,67047264|26|6.4|3|intron;ENSG00000116704.8,SLC35D1,chr1,-,I7.1,67042329,67047264|26|6.4|4|intron;ENSG00000116704.8,SLC35D1,chr1,-,I7.1,67042329,67047264|26|6.4|2|intron;nc|ENSG00000116704|Q9NTN3-2|SLC35D1;ENSG00000116704|ENST00000235345|SLC35D1 ENSG00000116704.8,SLC35D1,chr1,-,I7.1,67042329,67047264|26|6.4|1|intron ENSG00000116704.8,SLC35D1,chr1,-,I7.1,67042329,67047264|26|6.4|1|intron MSMS UPN47_class_I_Rep_1 2 584.7618408203125 2 584.366059 1166.71756 NaN NaN NaN NaN NaN NaN NaN 51.857 1 55.45 54.95 55.95 3.5932 0 0 0 0.53105 1 11495 11495 1.8442 0 1 50447 2196 31536 31553 58101 58101 0.1408744757045497 VPRLIRLIR 9 Unmodified _VPRLIRLIR_ 0 0 0 nc|ENSG00000196511|Q9H3S4-2|TPK1;ENST00000482940.5_1_7:144150752-144304024:-|nuORF nc|ENSG00000196511|Q9H3S4-2|TPK1 nc|ENSG00000196511|Q9H3S4-2|TPK1 MSMS UPN46_class_I_Rep_3 1 568.8013916015625 2 568.392942 1134.77133 NaN NaN NaN NaN NaN NaN NaN 82.1 1 82.1 81.6 82.6 0 0 0 0 0.4029 1 19428 19428 0 0 1 50448 7007 31537 31554 58102 58102 0.20933664792823947 VPRLKAAL 8 Unmodified _VPRLKAAL_ 0 0 0 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 MULTI-SECPEP UPN47_class_I_Rep_3 4 433.7721252441406 2 434.292362 866.570172 -0.42344 -0.0001839 -0.031074 -1.3495E-05 -0.45451 -0.00019739 434.29219546078525 66.404 0.1212 69.589 69.549 69.67 3.1853 12 9 2 0 0 0 0.72333 1 16023 16023 0 0 1 86222 50449 4846 31538 31555 58103 58103 0.13154975756299336 VPRLKAAL 8 Unmodified _VPRLKAAL_ 0 0 0 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 MULTI-SECPEP UPN48_class_I_Rep_1 5 433.7721252441406 2 434.292362 866.570172 0.022607 9.8181E-06 -0.63898 -0.0002775 -0.61637 -0.00026769 434.2919692835988 66.5 0.29137 69.952 69.799 70.09 3.4516 22 19 2 0 0 0 0.72333 1 15218 15218 0 0 1 121960 50450 4846 31538 31555 58104 58104 0.13154975756299336 VPRLKAAL 8 Unmodified _VPRLKAAL_ 0 0 0 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 MULTI-MATCH UPN48_class_I_Rep_1 5 2 434.292362 866.570172 0.026149 1.1356E-05 -0.58684 -0.00025486 -0.56069 -0.0002435 434.2920601344571 66.277 0.33076 69.729 69.468 69.799 3.4516 0.037567 -4.4272E-05 NaN 0 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 305250 50451 4846 31538 31555 0.13154975756299336 VPRLVTVDTF 10 Unmodified _VPRLVTVDTF_ 0 0 0 L1M6_dup5036|chr17:10047099-10047877:+|1.0022529948077|0.0051979138604066|7.59|151.0|3|1|sense L1M6_dup5036|chr17:10047099-10047877:+|1.0022529948077|0.0051979138604066|7.59|151.0|3|1|sense L1M6_dup5036|chr17:10047099-10047877:+|1.0022529948077|0.0051979138604066|7.59|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 573.833251953125 2 573.829506 1145.64446 NaN NaN NaN NaN NaN NaN NaN 87.99 1 91.717 91.217 92.217 3.7279 0 0 0 0.53105 1 20942 20942 0.40072 0 1 50452 9221 31539 31556 58105 58105 0.07746274057171831 VPRLWRARG 9 Unmodified _VPRLWRARG_ 0 0 0 REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF REV__ENST00000530527.5_1_11:17308195-17312910:+|nuORF MSMS UPN47_class_I_Rep_3 4 556.2491455078125 2 555.835791 1109.65703 NaN NaN NaN NaN NaN NaN NaN 14.411 1 17.78 17.28 18.28 3.3697 0 0 0 0.4029 1 543 543 0 0 1 + 50453 22840 31540 31557 58106 58106 0.1065877503071988 VPRLWRAW 8 Unmodified _VPRLWRAW_ 0 0 0 REV__AluSx_dup44459|chr7:74868320-74868629:+|1.1125469404993902|0.0938604111583429|3.57|150.0|1|1|sense REV__AluSx_dup44459|chr7:74868320-74868629:+|1.1125469404993902|0.0938604111583429|3.57|150.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 542.3665161132812 2 542.314161 1082.61377 NaN NaN NaN NaN NaN NaN NaN 36.805 1 36.805 36.305 37.305 0 0 0 0 0.40746 1 6862 6862 0.69038 0 1 + 50454 17140 31541 31558 58107 58107 0.07576585253445955 VPRNKKTT 8 Unmodified _VPRNKKTT_ 0 0 0 L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|55|3|sense L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|55|3|sense L1M4c_dup695|chr3:171689910-171691634:-|1.5664687178973058|0.0318114333083492|5.62|151.0|55|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.287841796875 2 472.287808 942.561064 0.24556 0.00011597 -0.61866 -0.00029219 -0.37311 -0.00017621 472.2875259391662 90.698 0.35259 90.698 90.644 90.996 0 54 37 2 0 0 0 0.82752 2 21956 21911;21956 2.0598 0 1 826120 50455 9079 31542 31559 58108;58109 58109 0.08748582399982752 VPRNRLGRTRA 11 Unmodified _VPRNRLGRTRA_ 0 0 0 REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 432.8851318359375 3 432.597088 1294.76943 -0.069105 -2.9895E-05 0.75805 0.00032793 0.68894 0.00029804 432.5974178736713 101.06 0.24567 104.67 104.57 104.81 3.612 63 31 3 0 0 0 22.551 1 24379 24379 1.0136 0.31591 1 140960 + 50456 22069 31543 31560 58110 58110 0.13384004036925035 VPRPALRQR 9 Unmodified _VPRPALRQR_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS UPN47_class_I_Rep_2 3 547.3441772460938 2 546.841074 1091.66759 0.59275 0.00032414 -1.0447 -0.00057126 -0.45191 -0.00024712 546.8400427032034 92.346 0.53715 95.811 95.786 96.323 3.4652 122 78 2 0 0 0 0.48846 1 22922 22922 1.8442 0.19162 1 462910 + 50457 18816 31544 31561 58111 58111 0.12542757685173456 VPRPALRQR 9 Unmodified _VPRPALRQR_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS UPN48_class_I_Rep_2 6 546.8412475585938 2 546.841074 1091.66759 0.48693 0.00026627 0.98999 0.00054137 1.4769 0.00080764 547.3441341009382 92.688 0.2629 96.451 96.347 96.61 3.7629 48 36 2 0 0 0 0.48846 1 22078 22078 1.8442 0 1 120270 + 50458 18816 31544 31561 58112 58112 0.12542757685173456 VPRPALRQR 9 Unmodified _VPRPALRQR_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH UPN46_class_I_Rep_3 1 2 546.841074 1091.66759 0.38769 0.00021201 -1.4554 -0.00079586 -1.0677 -0.00058385 546.8400583111777 96.425 0.076584 96.425 96.392 96.468 0 -0.013746 -0.00082315 NaN 1.8442 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 147150 + 50459 18816 31544 31561 0.12542757685173456 VPRPALRQR 9 Unmodified _VPRPALRQR_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH UPN48_class_I_Rep_1 5 2 546.841074 1091.66759 0.44077 0.00024103 -0.93619 -0.00051195 -0.49542 -0.00027092 546.8405111978125 92.789 0.069855 96.413 96.359 96.429 3.624 -0.025983 -0.00025533 NaN 1.8442 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 143590 + 50460 18816 31544 31561 0.12542757685173456 VPRPALRQR 9 Unmodified _VPRPALRQR_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 546.841074 1091.66759 0.48693 0.00026627 0.98999 0.00054137 1.4769 0.00080764 547.3441341009382 92.688 0.2629 96.451 96.347 96.61 3.7629 0.012174 0.0018513 NaN 1.8442 48 36 2 NaN NaN NaN NaN 0 NaN NaN 0 120270 + 50461 18816 31544 31561 0.12542757685173456 VPRPNSRVEIV 11 Unmodified _VPRPNSRVEIV_ 0 0 0 nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP nc|ENSG00000198929|O75052-3|NOS1AP nc|ENSG00000198929|O75052-3|NOS1AP MULTI-MSMS UPN46_class_I_Rep_3 1 633.8714599609375 2 633.369861 1264.72517 0.72091 0.0004566 -1.4017 -0.00088778 -0.68076 -0.00043117 633.3687721543239 90.698 0.12377 90.698 90.617 90.741 0 25 15 3 0 0 0 0.64873 1 21861 21861 6.6304 3.6351 1 656700 50462 5488 31545 31562 58113 58113 0.10339555100085818 VPRPPPPLA 9 Unmodified _VPRPPPPLA_ 0 0 0 REV__ENSG00000180720|ENST00000682254|CHRM4 REV__ENSG00000180720|ENST00000682254|CHRM4 MSMS UPN47_class_I_Rep_1 2 472.2875061035156 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 107.44 1 111.11 110.61 111.61 3.6724 0 0 0 0.34056 1 26330 26330 8.5933 0 1 + 50463 20712 31546 31563 58114 58114 0.09150671893689832 VPRPVPLRLS 10 Unmodified _VPRPVPLRLS_ 0 0 0 REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 567.2684326171875 2 567.361308 1132.70806 0.4409 0.00025015 3.3107 0.0018784 3.7516 0.0021285 567.3629013936792 49.215 0.076283 52.45 52.388 52.465 3.2345 5 3 2 0 0 0 0.84575 1 10760 10760 1.6526 1.0511 1 25556 + 50464 22835 31547 31564 58115 58115 0.14701679284939928 VPRREKPRSCK 11 Unmodified _VPRREKPRSCK_ 0 0 0 REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|70|3|sense REV__L1PA14_dup1049|chr5:40700262-40703620:+|2.711333611987182|0.1652040365914862|4.04|151.0|70|3|sense MSMS UPN46_class_I_Rep_3 1 452.2691345214844 3 452.594467 1354.76157 NaN NaN NaN NaN NaN NaN NaN 45.166 1 45.166 44.666 45.666 0 0 0 0 0.38417 1 9158 9158 1.4551 0.12547 1 + 50465 29135 31548 31565 58116 58116 0.09838108725148231 VPRRGRRR 8 Unmodified _VPRRGRRR_ 0 0 0 REV__ENST00000456150.5_1_3:47619232-47619304:-|nuORF REV__ENST00000456150.5_1_3:47619232-47619304:-|nuORF MSMS UPN47_class_I_Rep_1 2 527.2720336914062 2 526.836657 1051.65876 NaN NaN NaN NaN NaN NaN NaN 75.643 1 79.047 78.547 79.547 3.4034 0 0 0 0.40746 1 18682 18682 0.69038 0 1 + 50466 22411 31549 31566 58117 58117 0.1349982883937173 VPRRLLVV 8 Unmodified _VPRRLLVV_ 0 0 0 ENST00000502486.5_2_4:42153705-42154329:-|nuORF ENST00000502486.5_2_4:42153705-42154329:-|nuORF ENST00000502486.5_2_4:42153705-42154329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 476.3269958496094 2 476.326737 950.63892 0.22417 0.00010678 0.22807 0.00010864 0.45224 0.00021541 476.3266962829372 108.31 0.54762 111.98 111.72 112.27 3.6746 213 61 4 0 0 0 0.82752 1 25592 25592 0.69038 0 1 47872000 50467 7133 31550 31567 58118 58118 0.1616264005605217 VPRRLWIL 8 Unmodified _VPRRLWIL_ 0 0 0 L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|212|1|anti-sense L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|212|1|anti-sense L1PA11_dup3098|chr12:9170009-9176475:+|1.6170296608019077|0.1012637856153469|4.0|151.0|212|1|anti-sense MSMS UPN47_class_I_Rep_1 2 526.838623046875 2 526.840011 1051.66547 NaN NaN NaN NaN NaN NaN NaN 103.17 1 106.95 106.45 107.45 3.7788 0 0 0 0.40746 1 25374 25374 0.69038 0 1 50468 13670 31551 31568 58119 58119 0.1417032894737531 VPRRPEDAL 9 Unmodified _VPRRPEDAL_ 0 0 0 nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513 nc|ENSG00000163795|Q8N8E2-2|ZNF513 nc|ENSG00000163795|Q8N8E2-2|ZNF513 MSMS UPN47_class_I_Rep_2 3 526.7982177734375 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 19.671 1 23.068 22.568 23.568 3.3963 0 0 0 0.39428 1 1899 1899 2.0598 0 1 50469 4041 31552 31569 58120 58120 0.05371663566097595 VPRRSPRW 8 Unmodified _VPRRSPRW_ 0 0 0 nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15 nc|ENSG00000162775|Q96T37-2|RBM15 nc|ENSG00000162775|Q96T37-2|RBM15 MSMS UPN47_class_I_Rep_3 4 527.3057250976562 2 527.306867 1052.59918 NaN NaN NaN NaN NaN NaN NaN 90.612 1 94.01 93.51 94.51 3.3976 0 0 0 0.40753 1 22706 22706 0.6015 0 1 50470 3959 31553 31570 58121 58121 0.07498513105315396 VPRVGGLL 8 Unmodified _VPRVGGLL_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MSMS UPN47_class_I_Rep_2 3 405.763916015625 2 405.763438 809.512323 NaN NaN NaN NaN NaN NaN NaN 45.406 1 48.76 48.26 49.26 3.3534 0 0 0 0.40746 1 9565 9565 0.69038 0 1 50471 5290 31554 31571 58122 58122 0.0999471383091759 VPRVVKFM 8 Unmodified _VPRVVKFM_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G3227Rfs*2|1|0.05|ENSG00000154358|chr1:228287827-228287828|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.K4933Qfs*33|1|0.05|ENSG00000154358|chr1:228321637-228321638|-/C|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS UPN48_class_I_Rep_3 7 488.2933654785156 2 488.294048 974.573543 NaN NaN NaN NaN NaN NaN NaN 74.465 1 78.015 77.515 78.515 3.5505 0 0 0 0.40738 1 17445 17445 0.79363 0 1 50472 3669 31555 31572 58123 58123 0.0852390253868407 VPRVVLKK 8 Unmodified _VPRVVLKK_ 0 0 0 HERVL-int_dup2059|chr14:71464675-71465707:-|1.4458972674938269|0.0134939882632288|6.74|151.0|13|2|sense HERVL-int_dup2059|chr14:71464675-71465707:-|1.4458972674938269|0.0134939882632288|6.74|151.0|13|2|sense HERVL-int_dup2059|chr14:71464675-71465707:-|1.4458972674938269|0.0134939882632288|6.74|151.0|13|2|sense MSMS UPN46_class_I_Rep_3 1 469.8302307128906 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 93.635 1 93.635 93.135 94.135 0 0 0 0 0.40746 1 22699 22699 0.69038 0 1 50473 8364 31556 31573 58124 58124 0.17235524198792973 VPRYDEFIE 9 Unmodified _VPRYDEFIE_ 0 0 0 REV__L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|27|2|anti-sense REV__L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|27|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.287353515625 2 584.287671 1166.56079 0.54031 0.0003157 -0.030075 -1.7572E-05 0.51024 0.00029813 584.2876088876536 58.807 1.1016 62.294 61.875 62.977 3.487 247 69 5 0 0 0 0.41259 1 13056 13056 7.2892 0.56607 1 3861500 + 50474 26895 31557 31574 58125 58125 -0.015828821105287716 VPRYDEFIE 9 Unmodified _VPRYDEFIE_ 0 0 0 REV__L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|27|2|anti-sense REV__L1MC4_dup24720|chr22:40199272-40199786:+|1.084791176850963|0.0119389692735896|6.51|150.0|27|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.7899780273438 2 584.287671 1166.56079 0.45004 0.00026295 0.077494 4.5279E-05 0.52754 0.00030823 584.2876714769718 58.74 1.299 62.263 61.735 63.034 3.5231 267 88 4 0 0 0 0.41259 2 12893 12893;12936 7.2892 0.56607 1 4790600 + 50475 26895 31557 31574 58126;58127 58126 -0.015828821105287716 VPRYIIRY 8 Unmodified _VPRYIIRY_ 0 0 0 REV__ENSG00000111799|ENST00000322507|COL12A1 REV__ENSG00000111799|ENST00000322507|COL12A1 MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 36.548 1 36.548 36.048 37.048 0 0 0 0 0.40738 1 6785 6785 0.79363 0 1 + 50476 18466 31558 31575 58128 58128 0.09258032330808419 VPSDKLVF 8 Unmodified _VPSDKLVF_ 0 0 0 REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF MSMS UPN48_class_I_Rep_3 7 452.75982666015625 2 452.760561 903.506569 NaN NaN NaN NaN NaN NaN NaN 49.61 1 53.239 52.739 53.739 3.6291 0 0 0 0.4044 1 9977 9977 4.756 0 1 + 50477 19088 31559 31576 58129 58129 0.0509557052856735 VPSESVLLLIA 11 Unmodified _VPSESVLLLIA_ 0 0 0 REV__Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|18|1|sense REV__Harlequin-int_dup196|chr5:82267750-82271274:-|2.8158371676174774|0.3433289118701827|3.04|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 570.847412109375 2 570.847364 1139.68018 NaN NaN NaN NaN NaN NaN NaN 25.178 1 25.178 24.678 25.678 0 0 0 0 0.38417 1 3415 3415 0 0 1 + 50478 23508 31560 31577 58130 58130 0.11592311514209541 VPSFRLGQHLY 11 Unmodified _VPSFRLGQHLY_ 0 0 0 nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET nc|ENSG00000165731|P07949-2|RET nc|ENSG00000165731|P07949-2|RET MULTI-MSMS UPN48_class_I_Rep_2 6 439.5750427246094 3 439.575178 1315.70371 0.083026 3.6496E-05 -0.24789 -0.00010897 -0.16487 -7.2472E-05 439.57507624231715 37.354 1.4587 41.057 40.64 42.099 3.7021 278 149 2 0 0 0 0.64031 1 6420 6420 4.1166 0.52957 1 246540 50479 4200 31561 31578 58131 58131 0.05848170071385539 VPSKKKQP 8 Unmodified _VPSKKKQP_ 0 0 0 REV__nc|ENSG00000005483|Q8IZD2-8|KMT2E REV__nc|ENSG00000005483|Q8IZD2-8|KMT2E MSMS UPN48_class_I_Rep_2 6 456.3013610839844 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 41.769 1 45.52 45.02 46.02 3.7508 0 0 0 0.40643 1 7660 7660 2.0598 0 1 + 50480 31930 31562 31579 58132 58132 0.10114368031088361 VPSLTRRA 8 Unmodified _VPSLTRRA_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MULTI-MSMS UPN47_class_I_Rep_1 2 450.2746276855469 2 450.274701 898.534849 0.12405 5.5858E-05 -0.27142 -0.00012221 -0.14736 -6.6354E-05 450.27433119217665 84.745 0.086502 88.336 88.295 88.381 3.5914 18 12 2 0 0 0 0.82752 1 21199 21199 2.0598 0 1 461230 + 50481 20952 31563 31580 58133 58133 0.08152313228515595 VPSLTRRA 8 Unmodified _VPSLTRRA_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MSMS UPN48_class_I_Rep_2 6 450.2743225097656 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 84.789 1 88.483 87.983 88.983 3.6937 0 0 0 0.40643 1 20174 20174 2.0598 0 1 + 50482 20952 31563 31580 58134 58134 0.08152313228515595 VPSLTRRA 8 Unmodified _VPSLTRRA_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MULTI-SECPEP UPN48_class_I_Rep_2 6 450.27447509765625 2 450.274701 898.534849 0.14864 6.6931E-05 -0.1098 -4.944E-05 0.038845 1.7491E-05 450.27449259727206 84.747 0.14361 88.441 88.334 88.478 3.6937 32 19 2 0 0 0 0.72333 1 20142 20142 2.0598 0 1 992150 + 50483 20952 31563 31580 58135 58135 0.08152313228515595 VPSPVTTQQTF 11 Unmodified _VPSPVTTQQTF_ 0 0 0 REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF MSMS UPN48_class_I_Rep_2 6 602.8160400390625 2 602.814053 1203.61355 NaN NaN NaN NaN NaN NaN NaN 74.016 1 77.594 77.094 78.094 3.5779 0 0 0 0.38417 1 17404 17404 2.7352 0.89096 1 + 50484 22429 31564 31581 58136 58136 0.01989075952269559 VPSPVTTQQTF 11 Unmodified _VPSPVTTQQTF_ 0 0 0 REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF MSMS UPN48_class_I_Rep_3 7 602.8163452148438 2 602.814053 1203.61355 NaN NaN NaN NaN NaN NaN NaN 73.842 1 77.393 76.893 77.893 3.5505 0 0 0 0.38417 1 17291 17291 2.7352 0.43246 1 + 50485 22429 31564 31581 58137 58137 0.01989075952269559 VPSQQTNLY 9 Unmodified _VPSQQTNLY_ 0 0 0 REV__ENSG00000106304|ENST00000682466|SPAM1 REV__ENSG00000106304|ENST00000682466|SPAM1 MSMS UPN48_class_I_Rep_1 5 525.265380859375 2 525.266739 1048.51892 NaN NaN NaN NaN NaN NaN NaN 76.279 1 79.789 79.289 80.289 3.5102 0 0 0 0.39598 1 18116 18116 1.6526 0 1 + 50486 18321 31565 31582 58138 58138 -0.00339437799038933 VPSSQDER 8 Unmodified _VPSSQDER_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MSMS UPN46_class_I_Rep_3 1 459.2197570800781 2 459.219788 916.425024 NaN NaN NaN NaN NaN NaN NaN 101.53 1 101.53 101.03 102.03 0 0 0 0 0.40738 1 24771 24771 0.79363 0 1 + 50487 17843 31566 31583 58139 58139 -0.036531569013277476 VPSTVQKCSYF 11 Unmodified _VPSTVQKCSYF_ 0 0 0 L1PA3_dup5121|chr8:98694366-98700518:-|1.9420811833955165|0.1631325511588951|3.57|151.0|239|2|anti-sense L1PA3_dup5121|chr8:98694366-98700518:-|1.9420811833955165|0.1631325511588951|3.57|151.0|239|2|anti-sense L1PA3_dup5121|chr8:98694366-98700518:-|1.9420811833955165|0.1631325511588951|3.57|151.0|239|2|anti-sense MSMS UPN48_class_I_Rep_2 6 629.8092041015625 2 629.810456 1257.60636 NaN NaN NaN NaN NaN NaN NaN 65.408 1 68.888 68.388 69.388 3.4792 0 0 0 0.38417 1 14866 14866 2.9952 0.26005 1 50488 14270 31567 31584 58140 58140 -0.012139799197939283 VPSWEVPNV 9 Unmodified _VPSWEVPNV_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS UPN47_class_I_Rep_1 2 513.7666625976562 2 513.766374 1025.5182 0.27711 0.00014237 -0.1144 -5.8777E-05 0.16271 8.3594E-05 513.7662865007271 59.146 0.93292 62.563 62.163 63.096 3.4171 119 63 2 0 0 0 0.47197 1 13842 13842 3.5965 0.31518 1 313310 + 50489 21281 31568 31585 58141 58141 0.0064576755189591495 VPSWEVPNV 9 Unmodified _VPSWEVPNV_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS UPN47_class_I_Rep_2 3 513.7662353515625 2 513.766374 1025.5182 0.16969 8.7181E-05 0.022841 1.1735E-05 0.19253 9.8916E-05 513.7662942105275 59.33 0.95332 62.603 62.282 63.236 3.2731 136 64 3 0 0 0 0.35081 1 13834 13834 10.824 0 1 238110 + 50490 21281 31568 31585 58142 58142 0.0064576755189591495 VPTAQTFTEL 10 Unmodified _VPTAQTFTEL_ 0 0 0 REV__nc|ENSG00000164244|Q96M27-5|PRRC1 REV__nc|ENSG00000164244|Q96M27-5|PRRC1 MULTI-MSMS UPN47_class_I_Rep_2 3 553.7905883789062 2 553.790047 1105.56554 0.38382 0.00021256 0.044225 2.4491E-05 0.42805 0.00023705 553.7899914781723 64.83 1.0107 68.086 67.594 68.605 3.2556 156 80 3 0 0 0 0.53414 1 15587 15587 7.609 2.3121 1 475820 + 50491 20045 31569 31586 58143 58143 0.01698002032230761 VPTAQTFTEL 10 Unmodified _VPTAQTFTEL_ 0 0 0 REV__nc|ENSG00000164244|Q96M27-5|PRRC1 REV__nc|ENSG00000164244|Q96M27-5|PRRC1 MULTI-MSMS UPN47_class_I_Rep_3 4 553.7904663085938 2 553.790047 1105.56554 0.43072 0.00023853 0.96951 0.00053691 1.4002 0.00077544 553.7899876279793 64.801 1.0263 67.98 67.552 68.579 3.1795 174 81 3 0 0 0 0.30128 1 15530 15530 32.786 2.1491 1 347970 + 50492 20045 31569 31586 58144 58144 0.01698002032230761 VPTHHAGL 8 Unmodified _VPTHHAGL_ 0 0 0 REV__MLT1C_dup18099|chr19:7383465-7383868:-|6.364292521246825|0.064203462106898|6.63|151.0|26|2|anti-sense REV__MLT1C_dup18099|chr19:7383465-7383868:-|6.364292521246825|0.064203462106898|6.63|151.0|26|2|anti-sense MSMS UPN48_class_I_Rep_2 6 416.22772216796875 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 25.416 1 29.053 28.553 29.553 3.6363 0 0 0 0.40738 1 3093 3093 0.79363 0 1 + 50493 31642 31570 31587 58145 58145 0.017883797573290394 VPTPAQAVTTT 11 Unmodified _VPTPAQAVTTT_ 0 0 0 REV__nc|ENSG00000119318|P54727-2|RAD23B REV__nc|ENSG00000119318|P54727-2|RAD23B MSMS UPN48_class_I_Rep_3 7 543.298095703125 2 543.295496 1084.57644 NaN NaN NaN NaN NaN NaN NaN 32.489 1 36.178 35.678 36.678 3.6896 0 0 0 0.38417 1 4944 4944 0.96228 0.16864 1 + 50494 18669 31571 31588 58146 58146 0.03753404406506888 VPTRKAQL 8 Unmodified _VPTRKAQL_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;ENST00000505672.5_1_6:41904922-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_1 2 456.7842712402344 2 456.784902 911.55525 -0.42166 -0.00019261 -0.43837 -0.00020024 -0.86003 -0.00039285 456.78450172383396 16.375 0.55696 19.897 19.656 20.213 3.5224 108 63 2 0 0 0 0.82752 1 1067 1067 9.3831 0.78985 1 59233 50495 2019 31572 31589 58147 58147 0.09593483888306764 VPTRKAQL 8 Unmodified _VPTRKAQL_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;ENST00000505672.5_1_6:41904922-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS UPN47_class_I_Rep_2 3 456.7841796875 2 456.784902 911.55525 -0.48217 -0.00022025 -0.43361 -0.00019807 -0.91578 -0.00041832 456.7845203130661 16.674 0.77102 20.06 19.767 20.538 3.3864 141 89 2 0 0 0 0.82752 1 1107 1107 3.5965 3.5965 1 41770 50496 2019 31572 31589 58148 58148 0.09593483888306764 VPTRKAQL 8 Unmodified _VPTRKAQL_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;nc|ENSG00000112576|P30281-2|CCND3;ENST00000505672.5_1_6:41904922-42016364:-|nuORF ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 456.784902 911.55525 -0.99642 -0.00045515 -0.13816 -6.3107E-05 -1.1346 -0.00051826 456.7847467970705 16.826 0.89334 20.188 19.911 20.804 3.3619 0.13993 0.00016534 NaN 9.3831 122 101 2 NaN NaN NaN NaN 0 NaN NaN 0 38020 50497 2019 31572 31589 0.09593483888306764 VPTRKLRT 8 Unmodified _VPTRKLRT_ 0 0 0 REV__ENST00000253794.6_1_17:40931094-40931355:+|nuORF REV__ENST00000253794.6_1_17:40931094-40931355:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.8112487792969 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 28.844 1 32.343 31.843 32.843 3.4986 0 0 0 0.40738 1 4534 4534 0.79363 0 1 + 50498 21528 31573 31590 58149 58149 0.12232861670997863 VPTSAPHFT 9 Unmodified _VPTSAPHFT_ 0 0 0 MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|6|1|sense MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|6|1|sense MLT1H2_dup4530|chr20:32088853-32089298:-|1.8024234391121785|0.2441359277466648|2.88|149.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.7449645996094 2 478.745442 955.476331 0.1614 7.7271E-05 -0.13853 -6.632E-05 0.022875 1.0951E-05 478.7452604203832 42.843 0.88254 46.601 46.225 47.107 3.7579 167 74 3 0 0 0 0.33654 1 7899 7899 11.64 0 1 493010 50499 16449 31574 31591 58150 58150 -0.003187881366329748 VPTSPAKSVKK 11 Unmodified _VPTSPAKSVKK_ 0 0 0 REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1 REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1 MSMS UPN46_class_I_Rep_3 1 571.3505859375 2 571.350606 1140.68666 NaN NaN NaN NaN NaN NaN NaN 30.749 1 30.749 30.249 31.249 0 0 0 0 0.38417 1 5051 5051 0.30703 0.30703 1 + 50500 20943 31575 31592 58151 58151 0.12194249465551366 VPTTRRLT 8 Unmodified _VPTTRRLT_ 0 0 0 ENST00000598375.5_1_19:18699853-18700318:+|nuORF ENST00000598375.5_1_19:18699853-18700318:+|nuORF ENST00000598375.5_1_19:18699853-18700318:+|nuORF MSMS UPN47_class_I_Rep_1 2 472.2873229980469 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 88.226 1 91.882 91.382 92.382 3.6563 0 0 0 0.40738 1 22063 22063 0.79363 0 1 50501 7654 31576 31593 58152 58152 0.08748582399982752 VPTVISDLQR 10 Unmodified _VPTVISDLQR_ 0 0 0 ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|173|3|anti-sense ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|173|3|anti-sense ERVL-E-int_dup897|chr2:26219492-26221988:+|3.7684286658060575|0.1742989534535416|4.43|151.0|173|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 564.358642578125 2 564.324588 1126.63462 0.42744 0.00024122 3.1315 0.0017672 3.559 0.0020084 564.3261662134082 77.47 0.22217 77.47 77.361 77.583 0 27 20 2 0 0 0 0.84575 1 18105 18105 0.30703 0 1 127760 50502 7768 31577 31594 58153 58153 0.0763708605179545 VPVAIKAL 8 Unmodified _VPVAIKAL_ 0 0 0 ENSG00000070886|ENST00000166244|EPHA8 ENSG00000070886|ENST00000166244|EPHA8 ENSG00000070886|ENST00000166244|EPHA8 MSMS UPN47_class_I_Rep_1 2 405.77496337890625 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 44.993 1 48.693 48.193 49.193 3.6999 0 0 0 0.40738 1 9408 9408 0.79363 0 1 50503 1081 31578 31595 58154 58154 0.12508768633449563 VPVARASI 8 Unmodified _VPVARASI_ 0 0 0 nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1 nc|ENSG00000132842|O00203-3|AP3B1 nc|ENSG00000132842|O00203-3|AP3B1 MSMS UPN47_class_I_Rep_2 3 406.7529296875 2 406.75307 811.491587 NaN NaN NaN NaN NaN NaN NaN 33.029 1 36.483 35.983 36.983 3.4547 0 0 0 0.40527 1 5799 5799 3.5965 0 1 50504 2779 31579 31596 58155 58155 0.07830123451230975 VPVDKPPVIP 10 Unmodified _VPVDKPPVIP_ 0 0 0 REV__ENSG00000125124|ENST00000245157|BBS2 REV__ENSG00000125124|ENST00000245157|BBS2 MSMS UPN47_class_I_Rep_1 2 530.7998657226562 2 530.823692 1059.63283 NaN NaN NaN NaN NaN NaN NaN 81.811 1 85.323 84.823 85.823 3.5122 0 0 0 0.53105 1 20427 20427 1.8442 0 1 + 50505 18823 31580 31597 58156 58156 0.10540077033851958 VPVFLCVFKR 10 Unmodified _VPVFLCVFKR_ 0 0 0 ENSG00000093167.18,LRRFIP2,chr3,-,I14.1,37115096,37121463|60|6.82|2|intron;ENSG00000093167.18,LRRFIP2,chr3,-,I14.1,37115096,37121463|60|6.82|3|intron;ENSG00000093167.18,LRRFIP2,chr3,-,I14.1,37115096,37121463|60|6.82|4|intron ENSG00000093167.18,LRRFIP2,chr3,-,I14.1,37115096,37121463|60|6.82|2|intron ENSG00000093167.18,LRRFIP2,chr3,-,I14.1,37115096,37121463|60|6.82|2|intron MSMS UPN47_class_I_Rep_2 3 604.3536376953125 2 604.354637 1206.69472 NaN NaN NaN NaN NaN NaN NaN 76.443 1 79.765 79.265 80.265 3.3216 0 0 0 0.53105 1 18922 18922 1.6526 0 1 50506 1401 31581 31598 58157 58157 0.09964105181347804 VPVHSVLD 8 Unmodified _VPVHSVLD_ 0 0 0 REV__THE1A-int_dup62|chr1:113717923-113718988:-|3.645304216243986|0.3419196731364021|3.41|151.0|2|1|sense REV__THE1A-int_dup62|chr1:113717923-113718988:-|3.645304216243986|0.3419196731364021|3.41|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 433.24273681640625 2 433.242535 864.470518 NaN NaN NaN NaN NaN NaN NaN 107.91 1 107.91 107.41 108.41 0 0 0 0 0.40404 1 26329 26329 5.2307 0 1 + 50507 32217 31582 31599 58158 58158 0.03286113351714448 VPVLPVEAPPR 11 Unmodified _VPVLPVEAPPR_ 0 0 0 L1MC4a_dup3563|chr6:25033260-25034088:-|2.6144991686189747|0.041567812738608|5.97|151.0|55|3|anti-sense L1MC4a_dup3563|chr6:25033260-25034088:-|2.6144991686189747|0.041567812738608|5.97|151.0|55|3|anti-sense L1MC4a_dup3563|chr6:25033260-25034088:-|2.6144991686189747|0.041567812738608|5.97|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_2 6 587.3536987304688 2 587.353148 1172.69174 NaN NaN NaN NaN NaN NaN NaN 65.776 1 69.263 68.763 69.763 3.4866 0 0 0 0.38417 1 14976 14976 0.96228 0.43751 1 50508 11570 31583 31600 58159 58159 0.11230553328164206 VPVLRGNAFSS 11 Unmodified _VPVLRGNAFSS_ 0 0 0 L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|161|2|anti-sense L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|161|2|anti-sense L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|161|2|anti-sense MSMS UPN47_class_I_Rep_1 2 573.7515258789062 2 573.81693 1145.61931 NaN NaN NaN NaN NaN NaN NaN 21.687 1 25.362 24.862 25.862 3.6749 0 0 0 0.38417 1 2393 2393 1.1933 0.50296 1 50509 15045 31584 31601 58160 58160 0.052322192545943835 VPVLVSTYI 9 Unmodified _VPVLVSTYI_ 0 0 0 REV__L1PA5_dup9174|chr13:51709501-51712453:+|5.901703265480252|0.068078445635401|6.44|151.0|166|3|anti-sense REV__L1PA5_dup9174|chr13:51709501-51712453:+|5.901703265480252|0.068078445635401|6.44|151.0|166|3|anti-sense MSMS UPN47_class_I_Rep_2 3 495.79718017578125 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 75.653 1 78.975 78.475 79.475 3.3216 0 0 0 0.39428 1 18690 18690 2.0598 1.2661 1 + 50510 29826 31585 31602 58161 58161 0.0845269925117691 VPVPHTHL 8 Unmodified _VPVPHTHL_ 0 0 0 REV__ENST00000420366.5_2_9:130511774-130517394:-|nuORF REV__ENST00000420366.5_2_9:130511774-130517394:-|nuORF MSMS UPN47_class_I_Rep_1 2 450.2605285644531 2 450.25852 898.502486 NaN NaN NaN NaN NaN NaN NaN 28.91 1 32.668 32.168 33.168 3.7578 0 0 0 0.40738 1 4518 4518 0.79363 0 1 + 50511 22208 31586 31603 58162 58162 0.04917525825521807 VPVPKYLF 8 Unmodified _VPVPKYLF_ 0 0 0 THE1D-int_dup858|chr5:80462583-80464173:-|1.5131866949306358|0.1197449451194748|3.66|151.0|88|3|anti-sense THE1D-int_dup858|chr5:80462583-80464173:-|1.5131866949306358|0.1197449451194748|3.66|151.0|88|3|anti-sense THE1D-int_dup858|chr5:80462583-80464173:-|1.5131866949306358|0.1197449451194748|3.66|151.0|88|3|anti-sense MSMS UPN48_class_I_Rep_1 5 481.78790283203125 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 41.434 1 44.94 44.44 45.44 3.506 0 0 0 0.40604 1 7553 7553 2.5775 0.27475 1 50512 32965 31587 31604 58163 58163 0.08137037804942793 VPVQVKTK 8 Unmodified _VPVQVKTK_ 0 0 0 REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|429|3|anti-sense REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|429|3|anti-sense MSMS UPN47_class_I_Rep_2 3 449.790283203125 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 96.913 1 100.39 99.892 100.89 3.4791 0 0 0 0.40746 1 23802 23802 0.69038 0 1 + 50513 23609 31588 31605 58164 58164 0.11187252173863271 VPVRKVKI 8 Unmodified _VPVRKVKI_ 0 0 0 REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense MSMS UPN47_class_I_Rep_2 3 469.8305358886719 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.113 1 97.585 97.085 98.085 3.472 0 0 0 0.40746 1 23205 23205 0.69038 0 1 + 50514 27316 31589 31606 58165 58165 0.17235524198792973 VPVRKVKI 8 Unmodified _VPVRKVKI_ 0 0 0 REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense MSMS UPN47_class_I_Rep_3 4 469.8305358886719 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 95.735 1 99.145 98.645 99.645 3.4095 0 0 0 0.40746 1 23788 23788 0.69038 0 1 + 50515 27316 31589 31606 58166 58166 0.17235524198792973 VPVRKVKI 8 Unmodified _VPVRKVKI_ 0 0 0 REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense MSMS UPN48_class_I_Rep_2 6 469.8303527832031 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 94.283 1 98.059 97.559 98.559 3.7761 0 0 0 0.40625 1 22416 22416 2.3027 0 1 + 50516 27316 31589 31606 58167 58167 0.17235524198792973 VPVRKVKI 8 Unmodified _VPVRKVKI_ 0 0 0 REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense REV__L1MD1_dup2882|chr7:47337832-47338559:-|2.195063038081127|0.074901679435326|4.87|149.0|53|3|anti-sense MSMS UPN48_class_I_Rep_3 7 469.8309020996094 2 469.829112 937.643671 NaN NaN NaN NaN NaN NaN NaN 90.742 1 94.589 94.089 95.089 3.847 0 0 0 0.40625 1 21523 21523 2.3027 0 1 + 50517 27316 31589 31606 58168 58168 0.17235524198792973 VPVRQVRI 8 Unmodified _VPVRQVRI_ 0 0 0 REV__nc|ENSG00000160856|Q96P31-7|FCRL3 REV__nc|ENSG00000160856|Q96P31-7|FCRL3 MULTI-SECPEP UPN47_class_I_Rep_3 4 483.742431640625 2 483.813993 965.613434 -0.0027795 -1.3448E-06 3.1214 0.0015102 3.1187 0.0015088 483.81647340116615 46.83 0.088192 50.074 50.019 50.108 3.2439 7 4 2 0 0 0 0.72333 1 10049 10049 0.79363 0 1 94883 + 50518 19895 31590 31607 58169 58169 0.1292516553361338 VPVSHSVVI 9 Unmodified _VPVSHSVVI_ 0 0 0 MER44C_dup625|chr11:107321886-107322393:-|1.8772225305208552|0.1101683735979428|4.09|151.0|11|3|sense MER44C_dup625|chr11:107321886-107322393:-|1.8772225305208552|0.1101683735979428|4.09|151.0|11|3|sense MER44C_dup625|chr11:107321886-107322393:-|1.8772225305208552|0.1101683735979428|4.09|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 468.7791442871094 2 468.779285 935.544017 -0.3358 -0.00015742 0.17619 8.2596E-05 -0.15961 -7.482E-05 468.7792878306449 32.556 0.79044 36.269 35.96 36.75 3.7131 97 64 2 0 0 0 0.26948 1 5627 5627 15.847 1.9411 1 132620 50519 15987 31591 31608 58170 58170 0.07366661794185347 VPVSHSVVI 9 Unmodified _VPVSHSVVI_ 0 0 0 MER44C_dup625|chr11:107321886-107322393:-|1.8772225305208552|0.1101683735979428|4.09|151.0|11|3|sense MER44C_dup625|chr11:107321886-107322393:-|1.8772225305208552|0.1101683735979428|4.09|151.0|11|3|sense MER44C_dup625|chr11:107321886-107322393:-|1.8772225305208552|0.1101683735979428|4.09|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 468.7790222167969 2 468.779285 935.544017 -0.35048 -0.0001643 0.079998 3.7501E-05 -0.27048 -0.0001268 468.7792392396822 32.914 0.73031 36.369 35.965 36.695 3.4547 90 56 2 0 0 0 0.35081 1 5801 5801 10.824 1.4408 1 157060 50520 15987 31591 31608 58171 58171 0.07366661794185347 VPVVQILI 8 Unmodified _VPVVQILI_ 0 0 0 CFAP54|p.D1979Vfs*4|1|0.07|ENSG00000188596|chr12:96685159-96685160|-/T|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54 CFAP54|p.D1979Vfs*4|1|0.07|ENSG00000188596|chr12:96685159-96685160|-/T|frameshift_variant CFAP54|p.D1979Vfs*4|1|0.07|ENSG00000188596|chr12:96685159-96685160|-/T|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 440.7991638183594 2 440.796946 879.57934 0.10753 4.7397E-05 1.7426 0.00076813 1.8501 0.00081553 440.79932775056585 59.141 0.75837 62.621 62.191 62.949 3.4801 70 47 2 0 0 0 0.82752 1 12914 12914 0.79363 0 1 111050 50521 428 31592 31609 58172 58172 0.1347332432201256 VPVWGPIH 8 Unmodified _VPVWGPIH_ 0 0 0 REV__ENST00000552847.5_1_12:88429328-88439561:+|nuORF REV__ENST00000552847.5_1_12:88429328-88439561:+|nuORF MSMS UPN46_class_I_Rep_3 1 452.7575378417969 2 452.755613 903.496673 NaN NaN NaN NaN NaN NaN NaN 27.32 1 27.32 26.82 27.82 0 0 0 0 0.40738 1 4041 4041 0.79363 0 1 + 50522 19063 31593 31610 58173 58173 0.041064273138545104 VPVWHHLI 8 Unmodified _VPVWHHLI_ 0 0 0 REV__ENSG00000103489|ENST00000261381|XYLT1 REV__ENSG00000103489|ENST00000261381|XYLT1 MULTI-SECPEP UPN47_class_I_Rep_2 3 500.3035583496094 2 500.789987 999.565421 0.288 0.00014423 -2.4276 -0.0012157 -2.1396 -0.0010715 500.787200426347 54.724 0.071346 58.043 58.01 58.081 3.3187 5 3 2 0 0 0 0.72333 1 12385 12385 2.8892 0 1 26779 + 50523 18228 31594 31611 58174 58174 0.06562091613557186 VPVYLKFL 8 Unmodified _VPVYLKFL_ 0 0 0 L1M4a1_dup506|chr3:31590895-31591928:-|1.625581769089249|0.0144011440276732|6.82|151.0|43|1|anti-sense L1M4a1_dup506|chr3:31590895-31591928:-|1.625581769089249|0.0144011440276732|6.82|151.0|43|1|anti-sense L1M4a1_dup506|chr3:31590895-31591928:-|1.625581769089249|0.0144011440276732|6.82|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 489.806640625 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 60.237 1 63.402 62.902 63.902 3.1651 0 0 0 0.40738 1 14131 14131 0.79363 0 1 50524 8960 31595 31612 58175 58175 0.105296108390462 VPVYVSPL 8 Unmodified _VPVYVSPL_ 0 0 0 REV__L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|87|1|anti-sense REV__L1ME1_dup15703|chr8:124296274-124298388:-|1.8442841691693368|0.1544416335191248|3.58|151.0|87|1|anti-sense MSMS UPN48_class_I_Rep_1 5 437.2579345703125 2 437.257654 872.500755 NaN NaN NaN NaN NaN NaN NaN 90.828 1 94.454 93.954 94.954 3.626 0 0 0 0.40604 1 21827 21827 2.5775 0 1 + 50525 27617 31596 31613 58176 58176 0.05940472016891363 VPWALQKN 8 Unmodified _VPWALQKN_ 0 0 0 L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|93|2|anti-sense;L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|53|2|anti-sense L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|93|2|anti-sense L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|93|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 478.2721252441406 2 478.271627 954.528701 0.16223 7.7589E-05 -0.049941 -2.3885E-05 0.11229 5.3704E-05 478.27157775119815 42.433 0.78199 46.191 45.862 46.644 3.7579 105 73 2 0 0 0 0.82752 1 7893 7893 9.3474 2.6243 1 156710 50526 11860 31597 31614 58177 58177 0.04961794996984281 VPWALQKN 8 Unmodified _VPWALQKN_ 0 0 0 L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|93|2|anti-sense;L1MCc_dup2281|chr10:75550106-75551044:-|2.0571497549711464|0.007230559511025|8.15|148.0|53|2|anti-sense L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|93|2|anti-sense L1MDa_dup331|chr1:213182955-213184385:+|1.9990198275433355|0.0243075536892088|6.36|151.0|93|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.2714538574219 2 478.271627 954.528701 0.13418 6.4172E-05 -0.10085 -4.8233E-05 0.033326 1.5939E-05 478.27154773751914 42.718 0.62384 46.359 45.977 46.601 3.6415 67 47 2 0 0 0 0.82752 1 7844 7844 14.582 1.0738 1 115250 50527 11860 31597 31614 58178 58178 0.04961794996984281 VPWLGNTTRP 10 Unmodified _VPWLGNTTRP_ 0 0 0 REV__MER1A_dup2179|chr11:73129276-73129808:+|1.032282572902376|0.0048533013932844|7.73|151.0|1|1|sense REV__MER1A_dup2179|chr11:73129276-73129808:+|1.032282572902376|0.0048533013932844|7.73|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.811767578125 2 570.811648 1139.60874 0.38051 0.0002172 -0.16821 -9.6017E-05 0.2123 0.00012118 570.8115708665905 42.954 0.70649 46.596 46.324 47.03 3.6415 111 58 2 0 0 0 0.56333 1 8035 8035 1.4819 0.15237 1 265320 + 50528 31120 31598 31615 58179 58179 0.0445223660017291 VPWPQEATR 9 Unmodified _VPWPQEATR_ 0 0 0 ENSG00000084676.15,NCOA1,chr2,+,I18.1,24728477,24729500|46|9.78|2|intron;ENSG00000084676.15,NCOA1,chr2,+,I18.1,24728477,24729500|46|9.78|1|intron;nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1 ENSG00000084676.15,NCOA1,chr2,+,I18.1,24728477,24729500|46|9.78|2|intron ENSG00000084676.15,NCOA1,chr2,+,I18.1,24728477,24729500|46|9.78|2|intron MULTI-SECPEP UPN47_class_I_Rep_1 2 541.7810668945312 2 542.282723 1082.55089 0.39206 0.00021261 -0.052511 -2.8476E-05 0.33955 0.00018413 542.2827033206305 64.987 0.22609 68.343 68.179 68.405 3.3557 19 16 2 0 0 0 0.12422 1 15461 15461 2.3027 0 1 55616 50529 1256 31599 31616 58180 58180 0.012919746747456884 VPWVSVRR 8 Unmodified _VPWVSVRR_ 0 0 0 REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF MSMS UPN47_class_I_Rep_1 2 499.8013000488281 2 499.798343 997.582134 NaN NaN NaN NaN NaN NaN NaN 111.16 1 114.73 114.23 115.23 3.572 0 0 0 0.40738 1 27410 27410 0.79363 0.10326 1 + 50530 18419 31600 31617 58181 58181 0.08324592499513983 VPYIGVPIYLM 11 Unmodified _VPYIGVPIYLM_ 0 0 0 REV__L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|160|3|anti-sense REV__L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|160|3|anti-sense MSMS UPN48_class_I_Rep_3 7 632.8577880859375 2 632.854135 1263.69372 NaN NaN NaN NaN NaN NaN NaN 71.13 1 74.648 74.148 75.148 3.5185 0 0 0 0.38417 1 16496 16496 10.824 0 1 + 50531 29139 31601 31618 58182 58182 0.07241846021747733 VPYIPPWL 8 Unmodified _VPYIPPWL_ 0 0 0 REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|8|3|sense REV__L1MEf_dup5157|chr7:75457264-75457525:+|1.043516876911876|0.0674554262098895|3.95|151.0|8|3|sense MSMS UPN47_class_I_Rep_2 3 492.7803039550781 2 492.781296 983.54804 NaN NaN NaN NaN NaN NaN NaN 71.689 1 74.979 74.479 75.479 3.2899 0 0 0 0.4032 1 17536 17536 6.3541 2.0249 1 + 50532 28662 31602 31619 58183 58183 0.055607512878850685 VPYLRRTYR 9 Unmodified _VPYLRRTYR_ 0 0 0 REV__L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|63|2|sense REV__L1PA4_dup5435|chr7:90806491-90812630:+|1.274458578134544|0.0509037048823199|4.65|151.0|63|2|sense MSMS UPN47_class_I_Rep_3 4 612.755126953125 2 612.354014 1222.69348 NaN NaN NaN NaN NaN NaN NaN 37.619 1 40.86 40.36 41.36 3.2414 0 0 0 0.39518 1 7234 7234 1.8442 0 1 + 50533 29650 31603 31620 58184 58184 0.09103607136785286 VPYMIRHL 8 Unmodified _VPYMIRHL_ 0 0 0 REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.7891845703125 2 514.78913 1027.56371 0.094391 4.8591E-05 0.25779 0.00013271 0.35218 0.0001813 514.789232046216 49.238 0.92247 52.897 52.525 53.448 3.6592 138 64 3 0 0 0 0.82752 4 10783 10704;10743;10783;10825 24.674 10.092 1 328460 + 50534 29753 31604 31621 58185;58186;58187;58188 58187 0.05102714533290964 VPYMIRHL 8 Unmodified _VPYMIRHL_ 0 0 0 REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.7896118164062 2 514.78913 1027.56371 0.071518 3.6817E-05 0.28392 0.00014616 0.35544 0.00018298 514.7893087118115 49.658 0.9586 53.001 52.54 53.499 3.3431 130 59 3 0 0 0 0.82752 5 10786 10786;10830;10870;10900;10963 24.674 5.2349 1 249410 + 50535 29753 31604 31621 58189;58190;58191;58192;58193 58189 0.05102714533290964 VPYMIRHL 8 Unmodified _VPYMIRHL_ 0 0 0 REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense MSMS UPN47_class_I_Rep_2 3 514.7879638671875 2 514.78913 1027.56371 NaN NaN NaN NaN NaN NaN NaN 50.265 1 53.608 53.108 54.108 3.3431 0 0 0 0.39996 1 11033 11033 7.9102 2.6795 1 + 50536 29753 31604 31621 58194 58194 0.05102714533290964 VPYMIRHL 8 Unmodified _VPYMIRHL_ 0 0 0 REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.7874755859375 2 514.78913 1027.56371 0.3104 0.00015979 0.071459 3.6786E-05 0.38186 0.00019658 514.7892114255341 49.812 1.0825 53.038 52.64 53.723 3.2262 126 59 3 0 0 0 0.82752 6 11069 10948;10996;11039;11069;11115;11140 18.135 4.6271 1 292290 + 50537 29753 31604 31621 58195;58196;58197;58198;58199;58200 58198 0.05102714533290964 VPYMIRHL 8 Unmodified _VPYMIRHL_ 0 0 0 REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense REV__L1PA5_dup3614|chr5:59010776-59016291:+|3.059724225831636|0.1180219453674598|4.7|151.0|268|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 514.78913 1027.56371 0.049761 2.5616E-05 -2.0151 -0.0010373 -1.9653 -0.0010117 514.7881526331727 49.172 0.09079 52.518 52.442 52.532 3.3465 -0.18945 -0.0022545 NaN 24.674 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 28873 + 50538 29753 31604 31621 0.05102714533290964 VPYMSRYD 8 Unmodified _VPYMSRYD_ 0 0 0 REV__ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|1|intron REV__ENSG00000137478.15,FCHSD2,chr11,-,I15.1,72887576,72889828|36|9.6|1|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 515.2914428710938 2 515.73676 1029.45897 -0.45128 -0.00023274 1.5884 0.0008192 1.1371 0.00058646 515.7381068024854 23.114 0.17765 26.465 26.379 26.557 3.3503 20 13 2 0 0 0 0.72333 1 2901 2901 0.79363 0 1 37590 + 50539 19232 31605 31622 58201 58201 -0.05458451733943548 VPYWWECK 8 Unmodified _VPYWWECK_ 0 0 0 L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|21|1|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|21|1|sense L1MA8_dup526|chr1:197567009-197569563:+|1.124894866733705|0.0458830228336969|4.62|151.0|21|1|sense MSMS UPN46_class_I_Rep_3 1 555.8864135742188 2 555.757495 1109.50044 NaN NaN NaN NaN NaN NaN NaN 81.409 1 81.409 80.909 81.909 0 0 0 0 0.40738 1 19224 19224 0.79363 0 1 50540 10056 31606 31623 58202 58202 -0.04993270974614461 VQAFEESLAI 10 Unmodified _VQAFEESLAI_ 0 0 0 REV__ENST00000572426.5_1_17:3937307-3974023:-|nuORF REV__ENST00000572426.5_1_17:3937307-3974023:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 553.7897338867188 2 553.790047 1105.56554 0.43072 0.00023853 0.96951 0.00053691 1.4002 0.00077544 553.7899876279793 64.801 1.0263 67.98 67.552 68.579 3.1795 174 81 3 0 0 0 0.505 1 15652 15652 11.495 2.1116 1 347970 + 50541 17847 31607 31624 58203 58203 0.01698002032230761 VQAKGGRNR 9 Unmodified _VQAKGGRNR_ 0 0 0 ENST00000484763.1_1_14:50582563-50582965:-|nuORF;nc|ENSG00000100483|Q9H867-1|VCPKMT ENST00000484763.1_1_14:50582563-50582965:-|nuORF ENST00000484763.1_1_14:50582563-50582965:-|nuORF MSMS UPN47_class_I_Rep_3 4 493.28826904296875 2 493.286131 984.55771 NaN NaN NaN NaN NaN NaN NaN 63.076 1 66.246 65.746 66.746 3.1698 0 0 0 0.39518 1 14999 14999 1.8442 0 1 50542 7025 31608 31625 58204 58204 0.06481332345992996 VQARLKQK 8 Unmodified _VQARLKQK_ 0 0 0 REV__nc|ENSG00000137171|Q9NSK0-4|KLC4 REV__nc|ENSG00000137171|Q9NSK0-4|KLC4 MSMS UPN47_class_I_Rep_1 2 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 77.018 1 80.433 79.933 80.933 3.4149 0 0 0 0.40746 1 19086 19086 0.69038 0 1 + 50543 18858 31609 31626 58205 58205 0.12232861670997863 VQAVRAVIGN 10 Unmodified _VQAVRAVIGN_ 0 0 0 REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|17|1|sense REV__L1MB7_dup21911|chr20:37218568-37219958:-|1.0827469776191532|0.0729023294684992|3.89|151.0|17|1|sense MSMS UPN48_class_I_Rep_2 6 513.8056030273438 2 513.806365 1025.59818 NaN NaN NaN NaN NaN NaN NaN 58.287 1 61.786 61.286 62.286 3.4987 0 0 0 0.53105 1 12681 12681 3.2813 0 1 + 50544 26218 31610 31627 58206 58206 0.08640253945759468 VQCPPTRVM 9 Unmodified _VQCPPTRVM_ 0 0 0 nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH nc|ENSG00000146414|Q149N8-2|SHPRH nc|ENSG00000146414|Q149N8-2|SHPRH MULTI-MSMS UPN47_class_I_Rep_3 4 515.7617797851562 2 515.762255 1029.50996 -0.40882 -0.00021085 0.23585 0.00012164 -0.17297 -8.9209E-05 515.7622448417668 25.931 0.41077 29.279 29.069 29.48 3.3478 58 37 2 0 0 0 0.47197 1 3681 3681 3.5965 0 1 65664 50545 3437 31611 31628 58207 58207 -0.0036182596072649176 VQDRPESSL 9 Unmodified _VQDRPESSL_ 0 0 0 nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2 nc|ENSG00000167978|Q9UQ35-2|SRRM2 nc|ENSG00000167978|Q9UQ35-2|SRRM2 MULTI-MSMS UPN47_class_I_Rep_2 3 515.7606811523438 2 515.76182 1029.50909 -0.30815 -0.00015893 0.43414 0.00022391 0.12599 6.4981E-05 515.7618894429811 25.797 0.38225 29.291 29.089 29.472 3.4945 58 36 2 0 0 0 0.44742 1 3639 3639 5.2969 0.066215 1 53135 50546 4340 31612 31629 58208 58208 -0.004486258044153146 VQDRPESSL 9 Unmodified _VQDRPESSL_ 0 0 0 nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2 nc|ENSG00000167978|Q9UQ35-2|SRRM2 nc|ENSG00000167978|Q9UQ35-2|SRRM2 MULTI-MSMS UPN47_class_I_Rep_3 4 515.761962890625 2 515.76182 1029.50909 -0.40882 -0.00021085 1.0777 0.00055584 0.66889 0.00034499 515.7622448417668 25.931 0.41077 29.279 29.069 29.48 3.3478 58 37 2 0 0 0 0.36258 2 3719 3719;3745 10.151 2.5416 1 65664 50547 4340 31612 31629 58209;58210 58209 -0.004486258044153146 VQDRSFALF 9 Unmodified _VQDRSFALF_ 0 0 0 REV__AluJb_dup88547|chr13:28181239-28181528:+|2.0446042340516395|0.0191047931469688|6.74|151.0|23|3|anti-sense REV__AluJb_dup88547|chr13:28181239-28181528:+|2.0446042340516395|0.0191047931469688|6.74|151.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.7862548828125 2 541.785099 1081.55564 0.38168 0.00020679 0.16305 8.834E-05 0.54474 0.00029513 541.7850163177087 53.31 0.79746 56.894 56.482 57.28 3.5836 130 55 3 0 0 0 0.37599 1 11039 11039 9.3831 0 1 326670 + 50548 16972 31613 31630 58211 58211 0.018128588175159166 VQEAWLAFG 9 Unmodified _VQEAWLAFG_ 0 0 0 Tigger1_dup5094|chr6:105291750-105293659:-|1.4185256957566836|0.2247428986415822|2.66|151.0|24|2|sense Tigger1_dup5094|chr6:105291750-105293659:-|1.4185256957566836|0.2247428986415822|2.66|151.0|24|2|sense Tigger1_dup5094|chr6:105291750-105293659:-|1.4185256957566836|0.2247428986415822|2.66|151.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 510.7721252441406 2 510.761092 1019.50763 NaN NaN NaN NaN NaN NaN NaN 78.455 1 81.901 81.401 82.401 3.4456 0 0 0 0.31276 1 19506 19506 10.074 0.72649 1 50549 33115 31614 31631 58212 58212 -0.001342151025255589 VQEFSKSF 8 Unmodified _VQEFSKSF_ 0 0 0 REV__nc|ENSG00000122591|Q9BYI3-2|HYCC1 REV__nc|ENSG00000122591|Q9BYI3-2|HYCC1 MSMS UPN47_class_I_Rep_2 3 486.2454528808594 2 486.245275 970.475997 NaN NaN NaN NaN NaN NaN NaN 48.919 1 52.265 51.765 52.765 3.3465 0 0 0 0.40659 1 10619 10619 1.8442 0 1 + 50550 18753 31615 31632 58213 58213 -0.010422078564602089 VQELVSLYY 9 Unmodified _VQELVSLYY_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MULTI-MSMS UPN48_class_I_Rep_1 5 557.2947387695312 2 557.294965 1112.57538 0.49203 0.00027421 -0.11458 -6.3857E-05 0.37745 0.00021035 557.2947594727618 82.655 0.23018 86.23 86.077 86.307 3.5753 31 28 2 0 0 0 0.15122 2 19718 19718;19754 25.399 0 1 149140 50551 1876 31616 31633 58214;58215 58214 0.02359190037600456 VQEMPLLQ 8 Unmodified _VQEMPLLQ_ 0 0 0 ENST00000525179.1_1_19:50840577-50840625:-|nuORF;ENST00000527780.5_1_19:50840286-50840625:-|nuORF;ENST00000534789.5_1_19:50838046-50840625:-|nuORF ENST00000525179.1_1_19:50840577-50840625:-|nuORF ENST00000525179.1_1_19:50840577-50840625:-|nuORF MSMS UPN47_class_I_Rep_2 3 479.25860595703125 2 479.257328 956.500103 NaN NaN NaN NaN NaN NaN NaN 116.18 1 119.68 119.18 120.18 3.4965 0 0 0 0.40746 1 28355 28355 0.69038 0 1 50552 7254 31617 31634 58216 58216 0.02011309305555642 VQEQVKRL 8 Unmodified _VQEQVKRL_ 0 0 0 REV__nc|ENSG00000100485|Q07890-2|SOS2 REV__nc|ENSG00000100485|Q07890-2|SOS2 MULTI-MSMS UPN47_class_I_Rep_1 2 500.3001708984375 2 500.300916 998.587279 -0.24342 -0.00012178 0.18344 9.1773E-05 -0.059988 -3.0012E-05 500.3008978488086 35.788 0.63663 39.464 39.141 39.777 3.6762 97 42 3 0 0 0 0.82752 1 6528 6528 0.6015 0 1 217710 + 50553 18116 31618 31635 58217 58217 0.08792851571479332 VQEVLKQF 8 Unmodified _VQEVLKQF_ 0 0 0 REV__HERVL40-int_dup806|chr10:21636985-21638158:-|1.3891790515194802|0.0073410015257267|7.56|150.0|73|3|anti-sense REV__HERVL40-int_dup806|chr10:21636985-21638158:-|1.3891790515194802|0.0073410015257267|7.56|150.0|73|3|anti-sense MSMS UPN47_class_I_Rep_1 2 495.7718505859375 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 42.905 1 46.593 46.093 47.093 3.6875 0 0 0 0.40472 1 8770 8770 4.3292 0 1 + 50554 23921 31619 31636 58218 58218 0.05938644448622199 VQEVLKQF 8 Unmodified _VQEVLKQF_ 0 0 0 REV__HERVL40-int_dup806|chr10:21636985-21638158:-|1.3891790515194802|0.0073410015257267|7.56|150.0|73|3|anti-sense REV__HERVL40-int_dup806|chr10:21636985-21638158:-|1.3891790515194802|0.0073410015257267|7.56|150.0|73|3|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7721252441406 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 43.559 1 46.917 46.417 47.417 3.358 0 0 0 0.40472 1 8997 8997 4.3292 0 1 + 50555 23921 31619 31636 58219 58219 0.05938644448622199 VQFCKKKKKK 10 Unmodified _VQFCKKKKKK_ 0 0 0 REV__L1ME3Cz_dup12145|chr22:49654195-49654533:+|1.4261729883873215|0.0223817070764448|5.99|149.0|8|2|sense REV__L1ME3Cz_dup12145|chr22:49654195-49654533:+|1.4261729883873215|0.0223817070764448|5.99|149.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 632.8167724609375 2 632.899743 1263.78493 NaN NaN NaN NaN NaN NaN NaN 54.349 1 54.349 53.849 54.849 0 0 0 0 0.53105 1 11760 11760 1.4819 1.0236 1 + 50556 28108 31620 31637 58220 58220 0.16359154509746077 VQFFFSLKHL 10 Unmodified _VQFFFSLKHL_ 0 0 0 Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense MSMS UPN48_class_I_Rep_2 6 633.3690185546875 2 633.355691 1264.69683 NaN NaN NaN NaN NaN NaN NaN 88.588 1 92.326 91.826 92.826 3.7379 0 0 0 0.53105 1 21087 21087 6.2058 0 1 50557 33118 31621 31638 58221 58221 0.07506857190810479 VQFFFSLKHL 10 Unmodified _VQFFFSLKHL_ 0 0 0 Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense MSMS UPN48_class_I_Rep_2 6 633.3693237304688 2 633.355691 1264.69683 NaN NaN NaN NaN NaN NaN NaN 88.673 1 92.411 91.911 92.911 3.7379 0 0 0 0.53105 1 21106 21106 6.2058 0 1 50558 33118 31621 31638 58222 58222 0.07506857190810479 VQFFFSLKHL 10 Unmodified _VQFFFSLKHL_ 0 0 0 Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense Tigger1_dup5265|chr6:144599795-144601999:+|1.251563429299333|0.1440061166452363|3.12|151.0|142|3|anti-sense MSMS UPN48_class_I_Rep_2 6 633.3694458007812 2 633.355691 1264.69683 NaN NaN NaN NaN NaN NaN NaN 88.706 1 92.444 91.944 92.944 3.7379 0 0 0 0.53105 1 21116 21116 6.2058 0.9089 1 50559 33118 31621 31638 58223 58223 0.07506857190810479 VQFGANKSQY 10 Unmodified _VQFGANKSQY_ 0 0 0 nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1;ENSG00000160714|ENST00000292211|UBE2Q1 nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1 nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1 MULTI-MSMS UPN46_class_I_Rep_3 1 571.2862548828125 2 571.285463 1140.55637 0.34602 0.00019768 -0.13506 -7.7159E-05 0.21096 0.00012052 571.285459526225 35.791 0.46141 35.791 35.636 36.098 0 53 32 2 0 0 0 0.43841 2 6575 6551;6575 16.566 4.0343 1 141110 50560 3883 31622 31639 58224;58225 58225 -0.008283465334216089 VQFIVVPH 8 Unmodified _VQFIVVPH_ 0 0 0 REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|92|3|sense REV__HERVL-int_dup1308|chr9:100074354-100078175:+|1.3830038419623665|0.0785343743747733|4.14|151.0|92|3|sense MSMS UPN46_class_I_Rep_3 1 469.8946838378906 2 469.776545 937.538538 NaN NaN NaN NaN NaN NaN NaN 71.405 1 71.405 70.905 71.905 0 0 0 0 0.40738 1 16447 16447 0.79363 0 1 + 50561 23855 31623 31640 58226 58226 0.06726983002374709 VQFKEKPI 8 Unmodified _VQFKEKPI_ 0 0 0 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS UPN47_class_I_Rep_2 3 494.79510498046875 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 1 7085 7085 11.64 2.2572 1 349140 + 50562 19165 31624 31641 58227 58227 0.08103234828263339 VQFKIMLWI 9 Unmodified _VQFKIMLWI_ 0 0 0 REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|106|1|anti-sense REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|106|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 589.3432006835938 2 589.343738 1176.67292 0.54457 0.00032094 -1.4999 -0.00088395 -0.95532 -0.00056301 589.3426657080679 89.943 0.13828 89.943 89.895 90.033 0 20 7 3 0 0 0 0.41259 1 21687 21687 7.2892 1.5574 1 1854400 + 50563 23845 31625 31642 58228 58228 0.0916530043275543 VQFKIMLWI 9 Unmodified _VQFKIMLWI_ 0 0 0 REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|106|1|anti-sense REV__HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|106|1|anti-sense MSMS UPN47_class_I_Rep_1 2 589.34375 2 589.343738 1176.67292 NaN NaN NaN NaN NaN NaN NaN 87.109 1 90.746 90.246 91.246 3.6372 0 0 0 0.39518 1 21761 21761 1.8442 0.19162 1 + 50564 23845 31625 31642 58229 58229 0.0916530043275543 VQFPQMYL 8 Unmodified _VQFPQMYL_ 0 0 0 REV__L1ME2_dup4731|chr6:15312378-15312688:-|1.4709432664018929|0.0047814646188679|8.27|151.0|19|3|anti-sense REV__L1ME2_dup4731|chr6:15312378-15312688:-|1.4709432664018929|0.0047814646188679|8.27|151.0|19|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.2593994140625 2 513.259871 1024.50519 -0.59845 -0.00030716 -0.201 -0.00010317 -0.79945 -0.00041032 513.2596514069636 13.901 0.34969 17.27 17.171 17.521 3.3697 71 40 3 0 0 0 0.82752 1 441 441 5.7604 0 1 97779 + 50565 27859 31626 31643 58230 58230 -0.006083868318455643 VQFVLFLV 8 Unmodified _VQFVLFLV_ 0 0 0 L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|103|3|anti-sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|103|3|anti-sense L1M4c_dup1411|chr7:67218645-67220201:-|1.634234928638019|0.1229867336239097|3.73|151.0|103|3|anti-sense MSMS UPN47_class_I_Rep_2 3 482.7952880859375 2 482.796946 963.57934 NaN NaN NaN NaN NaN NaN NaN 115.45 1 118.95 118.45 119.45 3.5039 0 0 0 0.40604 1 28144 28144 2.5775 0 1 50566 9036 31627 31644 58231 58231 0.09609324321979784 VQFWLFNW 8 Unmodified _VQFWLFNW_ 0 0 0 REV__L1P1_dup1044|chr5:82013908-82016680:-|1.2514016480584285|0.0937558532180298|3.74|151.0|110|1|anti-sense REV__L1P1_dup1044|chr5:82013908-82016680:-|1.2514016480584285|0.0937558532180298|3.74|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2893676757812 2 570.287277 1138.56 NaN NaN NaN NaN NaN NaN NaN 22.742 1 26.446 25.946 26.946 3.7042 0 0 0 0.40625 1 2694 2694 2.3027 0.82083 1 + 50567 28816 31628 31645 58232 58232 -0.00373631968909649 VQFWLFWI 8 Unmodified _VQFWLFWI_ 0 0 0 ENST00000588967.1_1_19:44332352-44339713:+|nuORF ENST00000588967.1_1_19:44332352-44339713:+|nuORF ENST00000588967.1_1_19:44332352-44339713:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 569.8095703125 2 569.807845 1137.60114 0.50956 0.00029035 0.90998 0.00051851 1.4195 0.00080886 569.8084329704135 28.203 0.5633 31.834 31.626 32.189 3.6311 75 59 2 0 0 0 0.82752 1 3807 3807 2.5775 0 1 109890 50568 7600 31629 31646 58233 58233 0.03784129070572817 VQGDTHSP 8 Unmodified _VQGDTHSP_ 0 0 0 Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|59|1|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|59|1|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|59|1|anti-sense MSMS UPN46_class_I_Rep_3 1 420.697265625 2 420.695949 839.377345 NaN NaN NaN NaN NaN NaN NaN 70.495 1 70.495 69.995 70.995 0 0 0 0 0.40472 1 16203 16203 4.3292 0 1 50569 33273 31630 31647 58234 58234 -0.04876811101507883 VQGDTISI 8 Unmodified _VQGDTISI_ 0 0 0 REV__ENST00000586523.1_1_18:43666964-43667180:-|nuORF REV__ENST00000586523.1_1_18:43666964-43667180:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 416.22760009765625 2 416.724175 831.433798 -0.98083 -0.00040874 0.17076 7.1162E-05 -0.81007 -0.00033757 416.72427612126364 35.19 0.58367 38.616 38.286 38.869 3.4253 49 40 2 0 0 0 0.72333 1 6480 6480 11.64 0 1 64926 + 50570 23150 31631 31648 58235 58235 0.011338167351709671 VQGGLKIKLK 10 Unmodified _VQGGLKIKLK_ 0 0 0 REV__ENSG00000115274|ENST00000233331|INO80B REV__ENSG00000115274|ENST00000233331|INO80B MSMS UPN46_class_I_Rep_3 1 542.3655395507812 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 38.826 1 38.826 38.326 39.326 0 0 0 0 0.53105 1 7421 7421 0 0 1 + 50571 18552 31632 31649 58236 58236 0.179514475704309 VQGHGRVV 8 Unmodified _VQGHGRVV_ 0 0 0 nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1;ENST00000472876.5_1_17:19912695-20140191:+|nuORF nc|ENSG00000128487|Q5M775-5|SPECC1 nc|ENSG00000128487|Q5M775-5|SPECC1 MULTI-MSMS UPN48_class_I_Rep_1 5 426.2459716796875 2 426.245944 850.477334 -0.069498 -2.9623E-05 0.092026 3.9226E-05 0.022528 9.6025E-06 426.24597397372406 78.406 0.87312 81.941 81.548 82.421 3.5352 218 107 4 0 0 0 0.82752 1 18627 18627 0.69038 0 1 748790 50572 2591 31633 31650 58237 58237 0.046114710229517186 VQGIFVEKY 9 Unmodified _VQGIFVEKY_ 0 0 0 ENST00000460800.5_1_12:69042504-69044290:+|nuORF;nc|ENSG00000127314|P61224-2|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A ENST00000460800.5_1_12:69042504-69044290:+|nuORF ENST00000460800.5_1_12:69042504-69044290:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 541.797607421875 2 541.797675 1081.5808 0.29219 0.00015831 0.1553 8.4139E-05 0.44748 0.00024244 541.7977329063912 54.499 0.67922 54.499 54.257 54.936 0 146 77 3 0 0 0 0.01093 4 11806 11740;11806;11834;11868 69.338 36.553 1 486650 50573 2183 31634 31651 58238;58239;58240;58241 58239 0.043269136200933644 VQGKVPFTL 9 Unmodified _VQGKVPFTL_ 0 0 0 L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|321|1|anti-sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|321|1|anti-sense L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|321|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.79541015625 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.43982 1 6886 6886 5.7319 0.97584 1 289630 50574 9652 31635 31652 58242 58242 0.08103234828286077 VQGPVGTDF 9 Unmodified _VQGPVGTDF_ 0 0 0 ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207 ENST00000584696.1_1_17:30693734-30695045:+|nuORF ENST00000584696.1_1_17:30693734-30695045:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 460.2295837402344 2 460.229625 918.444697 0.13623 6.2695E-05 0.068741 3.1637E-05 0.20497 9.4332E-05 460.22955922988075 54.408 0.66192 54.408 54.139 54.8 0 146 72 3 0 0 0 0.0064161 3 11762 11762;11797;11832 126.57 78.22 1 1372400 50575 752 31636 31653 58243;58244;58245 58243 -0.017787808905723068 VQGRPGAPF 9 Unmodified _VQGRPGAPF_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000127663|O94953|KDM4B nc|ENSG00000127663|O94953|KDM4B MULTI-MSMS UPN46_class_I_Rep_3 1 464.7539978027344 2 464.753601 927.49265 0.12383 5.7552E-05 -0.17851 -8.2962E-05 -0.054673 -2.541E-05 464.75346328153216 37.15 0.56998 37.15 36.949 37.519 0 79 54 2 0 0 0 0.13631 2 6981 6981;7017 26.884 13.376 1 249310 50576 2571 31637 31654 58246;58247 58246 0.026003378201380656 VQHGVEGLTY 10 Unmodified _VQHGVEGLTY_ 0 0 0 ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2;ENST00000463077.5_1_3:149459310-149470177:-|nuORF ENST00000469896.1_1_3:149468461-149470237:-|nuORF ENST00000469896.1_1_3:149468461-149470237:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 551.7806396484375 2 551.780013 1101.54547 0.37995 0.00020965 -0.2093 -0.00011549 0.17065 9.4163E-05 551.7797400535784 44.393 0.35718 44.393 44.199 44.556 0 49 37 2 0 0 0 0.4561 1 8937 8937 15.248 2.7169 1 165520 50577 2089 31638 31655 58248 58248 -0.0012374890770843194 VQHGVEGLTY 10 Unmodified _VQHGVEGLTY_ 0 0 0 ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2;ENST00000463077.5_1_3:149459310-149470177:-|nuORF ENST00000469896.1_1_3:149468461-149470237:-|nuORF ENST00000469896.1_1_3:149468461-149470237:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 551.780013 1101.54547 0.37995 0.00020965 -0.2093 -0.00011549 0.17065 9.4163E-05 551.7797400535784 44.393 0.35718 44.393 44.199 44.556 0 -0.15824 6.6674E-05 NaN 15.248 49 37 2 NaN NaN NaN NaN 0 NaN NaN 0 165520 50578 2089 31638 31655 -0.0012374890770843194 VQHGVEGLTY 10 Unmodified _VQHGVEGLTY_ 0 0 0 ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2;ENST00000463077.5_1_3:149459310-149470177:-|nuORF ENST00000469896.1_1_3:149468461-149470237:-|nuORF ENST00000469896.1_1_3:149468461-149470237:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 551.780013 1101.54547 0.43489 0.00023996 -0.59725 -0.00032955 -0.16236 -8.9587E-05 552.280820683185 40.959 0.064819 44.71 44.675 44.74 3.7508 0.15824 -0.00036145 NaN 15.248 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 72634 50579 2089 31638 31655 -0.0012374890770843194 VQHHSRQHL 9 Unmodified _VQHHSRQHL_ 0 0 0 REV__ENSG00000176472|ENST00000314228|ZNF575 REV__ENSG00000176472|ENST00000314228|ZNF575 MSMS UPN47_class_I_Rep_1 2 571.3043212890625 2 571.302313 1140.59007 NaN NaN NaN NaN NaN NaN NaN 44.188 1 47.883 47.383 48.383 3.6951 0 0 0 0.39598 1 9163 9163 1.6526 0.17072 1 + 50580 20589 31639 31656 58249 58249 0.02540119748982761 VQHIYATTGD 10 Unmodified _VQHIYATTGD_ 0 0 0 REV__ENST00000484932.5_1_6:35248907-35254026:+|nuORF REV__ENST00000484932.5_1_6:35248907-35254026:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 552.76953125 2 552.769645 1103.52474 0.45924 0.00025385 0.16638 9.1969E-05 0.62562 0.00034582 552.769690970639 54.065 0.75234 57.251 56.928 57.68 3.1856 95 48 3 0 0 0 0.56078 1 12344 12344 3.2813 0 1 194420 + 50581 17748 31640 31657 58250 58250 -0.022883392873836783 VQIDVPWHD 9 Unmodified _VQIDVPWHD_ 0 0 0 REV__ENST00000440763.6_2_8:88554371-88554413:-|nuORF REV__ENST00000440763.6_2_8:88554371-88554413:-|nuORF MSMS UPN48_class_I_Rep_1 5 554.7745361328125 2 554.774731 1107.53491 NaN NaN NaN NaN NaN NaN NaN 115.24 1 118.87 118.37 119.37 3.6282 0 0 0 0.39518 1 28030 28030 1.8442 0 1 + 50582 22328 31641 31658 58251 58251 -0.014557315621459566 VQIEIQIN 8 Unmodified _VQIEIQIN_ 0 0 0 REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MULTI-MSMS UPN47_class_I_Rep_2 3 478.7738037109375 2 478.7742 955.533846 0.12766 6.1118E-05 -0.31819 -0.00015234 -0.19053 -9.1221E-05 478.77401598645537 70.635 0.48443 73.918 73.669 74.154 3.2828 62 46 2 0 0 0 0.82752 1 17176 17176 19.257 1.1106 1 120200 + 50583 18237 31642 31659 58252 58252 0.0543005406894963 VQIEIQIN 8 Unmodified _VQIEIQIN_ 0 0 0 REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron REV__ENSG00000103657.14,HERC1,chr15,-,I19.1,63725514,63727646|25|5.98|3|intron MULTI-MSMS UPN47_class_I_Rep_3 4 478.7739562988281 2 478.7742 955.533846 0.072865 3.4886E-05 -0.25413 -0.00012167 -0.18126 -8.6783E-05 478.7740311932128 70.639 0.55109 73.851 73.558 74.109 3.2113 74 47 2 0 0 0 0.82752 1 17301 17301 25.399 1.3787 1 121400 + 50584 18237 31642 31659 58253 58253 0.0543005406894963 VQIIQITV 8 Unmodified _VQIIQITV_ 0 0 0 REV__nc|ENSG00000147274|P38159-3|RBMX REV__nc|ENSG00000147274|P38159-3|RBMX MULTI-MSMS UPN48_class_I_Rep_2 6 457.2896423339844 2 457.289485 912.564418 0.16634 7.6064E-05 -0.11438 -5.2302E-05 0.051961 2.3761E-05 457.28943572090867 78.913 0.50175 82.546 82.338 82.84 3.6331 74 56 2 0 0 0 0.82752 2 18710 18710;18780 12.532 0 1 162080 + 50585 32008 31643 31660 58254;58255 58254 0.10463832453990562 VQILVIYLF 9 Unmodified _VQILVIYLF_ 0 0 0 REV__L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|106|3|anti-sense REV__L1ME2z_dup3125|chr8:47315452-47316975:+|1.6321862337550204|0.0541791364287827|4.91|151.0|106|3|anti-sense MSMS UPN48_class_I_Rep_1 5 554.343994140625 2 554.344261 1106.67397 NaN NaN NaN NaN NaN NaN NaN 77.564 1 81.086 80.586 81.586 3.5221 0 0 0 0.4029 1 18465 18465 0 0 1 + 50586 27916 31644 31661 58256 58256 0.12489838073292958 VQIPPSTTY 9 Unmodified _VQIPPSTTY_ 0 0 0 ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3 ENST00000587928.5_1_19:10781281-10792148:+|nuORF ENST00000587928.5_1_19:10781281-10792148:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 503.10687255859375 2 503.266207 1004.51786 0.23394 0.00011774 -0.421 -0.00021187 -0.18705 -9.4138E-05 503.2660880426901 54.906 0.20655 54.906 54.77 54.977 0 35 24 2 0 0 0 0.044386 1 11908 11908 45.7 15.063 1 328230 50587 2617 31645 31662 58257 58257 0.015783478320372524 VQIPPSTTY 9 Unmodified _VQIPPSTTY_ 0 0 0 ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3 ENST00000587928.5_1_19:10781281-10792148:+|nuORF ENST00000587928.5_1_19:10781281-10792148:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 503.1075744628906 2 503.266207 1004.51786 0.23499 0.00011826 0.56126 0.00028246 0.79625 0.00040072 503.26640092806844 54.678 0.2252 54.678 54.559 54.784 0 48 27 2 0 0 0 0.036198 1 11838 11838 49.554 18.918 1 230950 50588 2617 31645 31662 58258 58258 0.015783478320372524 VQIPPSTTY 9 Unmodified _VQIPPSTTY_ 0 0 0 ENST00000587928.5_1_19:10781281-10792148:+|nuORF;nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3 ENST00000587928.5_1_19:10781281-10792148:+|nuORF ENST00000587928.5_1_19:10781281-10792148:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 503.1076354980469 2 503.266207 1004.51786 0.23297 0.00011724 0.53144 0.00026746 0.76441 0.0003847 503.2663609921222 55.095 0.18083 55.095 54.977 55.158 0 29 19 2 0 0 0 0.043932 1 11974 11974 34.932 13.185 1 235120 50589 2617 31645 31662 58259 58259 0.015783478320372524 VQKAQAFL 8 Unmodified _VQKAQAFL_ 0 0 0 L1PA5_dup1722|chr3:18108953-18111058:+|1.2863991589720207|0.0070683714595433|7.51|147.0|1|1|sense L1PA5_dup1722|chr3:18108953-18111058:+|1.2863991589720207|0.0070683714595433|7.51|147.0|1|1|sense L1PA5_dup1722|chr3:18108953-18111058:+|1.2863991589720207|0.0070683714595433|7.51|147.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 452.76617431640625 2 452.766178 903.517802 NaN NaN NaN NaN NaN NaN NaN 48.387 1 52.069 51.569 52.569 3.6819 0 0 0 0.388 1 10434 10434 12.532 0 1 50590 14430 31646 31663 58260 58260 0.06218392622713509 VQKAQAFL 8 Unmodified _VQKAQAFL_ 0 0 0 L1PA5_dup1722|chr3:18108953-18111058:+|1.2863991589720207|0.0070683714595433|7.51|147.0|1|1|sense L1PA5_dup1722|chr3:18108953-18111058:+|1.2863991589720207|0.0070683714595433|7.51|147.0|1|1|sense L1PA5_dup1722|chr3:18108953-18111058:+|1.2863991589720207|0.0070683714595433|7.51|147.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 452.76611328125 2 452.766178 903.517802 -0.20206 -9.1485E-05 -0.20849 -9.4395E-05 -0.41054 -0.00018588 452.76600740119096 48.632 0.53677 51.979 51.721 52.257 3.3465 32 27 2 0 0 0 0.82752 1 10506 10506 8.5933 0 1 52636 50591 14430 31646 31663 58261 58261 0.06218392622713509 VQKCKTFI 8 Unmodified _VQKCKTFI_ 0 0 0 L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|23|3|sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|23|3|sense L1M5_dup25192|chr7:152325746-152326545:-|1.1754778221079287|0.0226845764855816|5.7|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 483.7750244140625 2 483.775688 965.536823 NaN NaN NaN NaN NaN NaN NaN 29.804 1 33.127 32.627 33.627 3.3235 0 0 0 0.40746 1 4864 4864 0.69038 0 1 50592 9126 31647 31664 58262 58262 0.052676059220857496 VQKFFYPY 8 Unmodified _VQKFFYPY_ 0 0 0 REV__L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|172|1|anti-sense REV__L1M3b_dup268|chr7:92876300-92879961:+|7.362372948018944|0.0061741325160331|10.22|150.0|172|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.28271484375 2 546.28166 1090.54877 -0.14086 -7.695E-05 -0.19119 -0.00010444 -0.33205 -0.00018139 546.2815250409631 33.692 1.0099 36.966 36.592 37.602 3.2748 133 70 2 0 0 0 0.82752 4 5954 5940;5954;6214;6219 8.5933 8.5933 1 569390 + 50593 24317 31648 31665 58263;58264;58265;58266 58264 0.007115459369288146 VQKFSSFYNF 10 Unmodified _VQKFSSFYNF_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|235|2|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|235|2|anti-sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|235|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 422.8765869140625 3 422.876634 1265.60807 0.030383 1.2848E-05 -0.0051795 -2.1903E-06 0.025203 1.0658E-05 422.87656675165937 43.492 1.7303 47.13 46.654 48.385 3.6385 383 124 4 0 0 0 0.43106 1 8206 8206 10.899 0.099449 1 2102500 50594 10703 31649 31666 58267 58267 -0.014106028395417525 VQKIFTPA 8 Unmodified _VQKIFTPA_ 0 0 0 REV__L1PA6_dup1562|chr4:83241625-83246952:+|4.754032741513817|0.254279571852269|4.22|151.0|71|2|sense REV__L1PA6_dup1562|chr4:83241625-83246952:+|4.754032741513817|0.254279571852269|4.22|151.0|71|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 453.256103515625 2 452.268553 902.522553 -0.10706 -4.8422E-05 0.092326 4.1756E-05 -0.014738 -6.6655E-06 452.2686644367865 28.298 0.12396 28.298 28.249 28.373 0 14 6 3 0 0 0 0.82752 1 4341 4341 5.2307 0 1 96569 + 50595 29535 31650 31667 58268 58268 0.06739276765472368 VQKILVSHK 9 Unmodified _VQKILVSHK_ 0 0 0 L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|44|3|sense L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|44|3|sense L1M4a1_dup1175|chr7:36701081-36702482:-|1.0277676046022115|0.0087458517538524|6.88|151.0|44|3|sense MSMS UPN47_class_I_Rep_1 2 526.3377075195312 2 526.334759 1050.65496 NaN NaN NaN NaN NaN NaN NaN 102.69 1 106.47 105.97 106.97 3.7788 0 0 0 0.39518 1 25267 25267 1.8442 0 1 50596 8938 31651 31668 58269 58269 0.13166301502269562 VQKKHLTN 8 Unmodified _VQKKHLTN_ 0 0 0 L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|111|3|sense;L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|47|1|sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|111|3|sense L1PB1_dup4783|chr6:13128182-13131124:+|1.3499501858307177|0.0245356326723539|5.78|150.0|111|3|sense MSMS UPN48_class_I_Rep_1 5 484.2880554199219 2 484.287808 966.561064 NaN NaN NaN NaN NaN NaN NaN 35.286 1 38.796 38.296 39.296 3.5101 0 0 0 0.40746 1 5752 5752 0.69038 0 1 50597 11904 31652 31669 58270 58270 0.07644582399973388 VQKKKKKKKK 10 Unmodified _VQKKKKKKKK_ 0 0 0 REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense REV__L1PA6_dup4320|chr11:9930626-9933967:+|1.2068054426586712|0.0295899808367597|5.35|151.0|53|2|sense MSMS UPN46_class_I_Rep_3 1 424.2724609375 3 424.306363 1269.89726 NaN NaN NaN NaN NaN NaN NaN 44.207 1 44.207 43.707 44.707 0 0 0 0 0.53105 1 8891 8891 0 0 1 50598 29907 31653 31670 58271 58271 0.27310751578238524 VQKKKKNL 8 Unmodified _VQKKKKNL_ 0 0 0 L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|163|1|anti-sense L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|163|1|anti-sense L1PA7_dup5576|chr6:121150010-121154449:-|2.351189200613405|0.0624891951448446|5.23|151.0|163|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.328857421875 2 493.329476 984.6444 -0.54194 -0.00026735 0.044243 2.1826E-05 -0.49769 -0.00024553 493.3295006794752 21.858 0.74358 25.208 24.802 25.545 3.3496 131 70 2 0 0 0 0.82752 1 2510 2510 2.5775 0 1 75244 50599 14850 31654 31671 58272 58272 0.15146318847837392 VQKKKYAF 8 Unmodified _VQKKKYAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS UPN47_class_I_Rep_2 3 506.3021240234375 2 506.302927 1010.5913 -0.22771 -0.00011529 -0.77278 -0.00039126 -1.0005 -0.00050655 506.3023766561669 15.232 0.3942 18.619 18.489 18.884 3.3864 105 47 3 0 0 0 0.82752 1 747 747 23.148 0 1 119890 50600 3672 31655 31672 58273 58273 0.08642941065170362 VQKKKYAF 8 Unmodified _VQKKKYAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 506.302927 1010.5913 -0.28656 -0.00014509 -1.0771 -0.00054536 -1.3637 -0.00069045 506.3025317833759 15.13 0.6297 18.627 18.49 19.12 3.4968 0.0039089 -0.00018019 NaN 23.148 156 73 4 NaN NaN NaN NaN 0 NaN NaN 0 196420 50601 3672 31655 31672 0.08642941065170362 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN46_class_I_Rep_3 1 514.3591918945312 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 110.81 1 110.81 110.31 111.31 0 0 0 0 0.40798 1 27298 27298 0 0 1 + 50602 18507 31656 31673 58274 58274 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN46_class_I_Rep_3 1 514.3589477539062 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 112.56 1 112.56 112.06 113.06 0 0 0 0 0.40798 1 27792 27792 0 0 1 + 50603 18507 31656 31673 58275 58275 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN46_class_I_Rep_3 1 514.3585205078125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 114.01 1 114.01 113.51 114.51 0 0 0 0 0.40798 1 28168 28168 0 0 1 + 50604 18507 31656 31673 58276 58276 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_1 2 514.3583374023438 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 111.37 1 114.94 114.44 115.44 3.572 0 0 0 0.40798 1 27471 27471 0 0 1 + 50605 18507 31656 31673 58277 58277 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_1 2 514.35888671875 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 113.77 1 117.34 116.84 117.84 3.572 0 0 0 0.40798 1 28088 28088 0 0 1 + 50606 18507 31656 31673 58278 58278 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_1 2 514.3583984375 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 114.82 1 118.4 117.9 118.9 3.5809 0 0 0 0.40798 1 28385 28385 0 0 1 + 50607 18507 31656 31673 58279 58279 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_1 2 514.3588256835938 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 115.49 1 119.08 118.58 119.58 3.5943 0 0 0 0.40798 1 28575 28575 0 0 1 + 50608 18507 31656 31673 58280 58280 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_2 3 514.358642578125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 95.401 1 98.877 98.377 99.377 3.4753 0 0 0 0.40798 1 23479 23479 0 0 1 + 50609 18507 31656 31673 58281 58281 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_2 3 514.3585205078125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 103.32 1 106.85 106.35 107.35 3.5231 0 0 0 0.40798 1 25119 25119 0 0 1 + 50610 18507 31656 31673 58282 58282 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_2 3 514.3587646484375 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.37 120.87 121.87 3.4822 0 0 0 0.40798 1 28831 28831 0 0 1 + 50611 18507 31656 31673 58283 58283 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_3 4 514.3585205078125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 99.39 1 102.84 102.34 103.34 3.4483 0 0 0 0.40798 1 24579 24579 0 0 1 + 50612 18507 31656 31673 58284 58284 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_3 4 514.3585815429688 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 110.75 1 114.28 113.78 114.78 3.529 0 0 0 0.40798 1 27176 27176 0 0 1 + 50613 18507 31656 31673 58285 58285 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_3 4 514.3583984375 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 115.35 1 118.83 118.33 119.33 3.4802 0 0 0 0.40798 1 28361 28361 0 0 1 + 50614 18507 31656 31673 58286 58286 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_3 4 514.3588256835938 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 117.4 1 120.84 120.34 121.34 3.4425 0 0 0 0.40798 1 28922 28922 0 0 1 + 50615 18507 31656 31673 58287 58287 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN47_class_I_Rep_3 4 514.359130859375 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 117.95 1 121.38 120.88 121.88 3.4238 0 0 0 0.40798 1 29077 29077 0 0 1 + 50616 18507 31656 31673 58288 58288 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN48_class_I_Rep_1 5 514.3585205078125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 110.86 1 114.5 114 115 3.6326 0 0 0 0.40798 1 26899 26899 0 0 1 + 50617 18507 31656 31673 58289 58289 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN48_class_I_Rep_1 5 514.3585815429688 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 111.23 1 114.86 114.36 115.36 3.6326 0 0 0 0.40798 1 26986 26986 0 0 1 + 50618 18507 31656 31673 58290 58290 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN48_class_I_Rep_2 6 514.3580322265625 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 112.88 1 116.54 116.04 117.04 3.6648 0 0 0 0.40798 1 26912 26912 0 0 1 + 50619 18507 31656 31673 58291 58291 0.19030000493103216 VQKKRKLK 8 Unmodified _VQKKRKLK_ 0 0 0 REV__ENSG00000113387|ENST00000265073|SUB1 REV__ENSG00000113387|ENST00000265073|SUB1 MSMS UPN48_class_I_Rep_2 6 514.3588256835938 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 118.92 1 122.58 122.08 123.08 3.6652 0 0 0 0.40798 1 28524 28524 0 0 1 + 50620 18507 31656 31673 58292 58292 0.19030000493103216 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN46_class_I_Rep_3 1 479.7842712402344 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 48.73 1 48.73 48.23 49.23 0 0 0 0 0.40625 1 10177 10177 2.3027 0 1 50621 1312 31657 31674 58293 58293 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN48_class_I_Rep_1 5 479.3088073730469 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 44.399 1 47.912 47.412 48.412 3.5132 0 0 0 0.40643 1 8447 8447 2.0598 0 1 50622 1312 31657 31674 58294 58294 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN48_class_I_Rep_1 5 479.3095397949219 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 44.519 1 48.032 47.532 48.532 3.5132 0 0 0 0.40625 1 8483 8483 2.3027 0 1 50623 1312 31657 31674 58295 58295 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN48_class_I_Rep_1 5 479.3092041015625 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 44.564 1 48.077 47.577 48.577 3.5132 0 0 0 0.40625 1 8497 8497 2.3027 0 1 50624 1312 31657 31674 58296 58296 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN48_class_I_Rep_1 5 479.30889892578125 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 48.494 1 52.018 51.518 52.518 3.5239 0 0 0 0.40625 1 9699 9699 2.3027 0 1 50625 1312 31657 31674 58297 58297 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN48_class_I_Rep_2 6 479.3092041015625 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 53.941 1 57.522 57.022 58.022 3.5817 0 0 0 0.40625 1 11353 11353 2.3027 0 1 50626 1312 31657 31674 58298 58298 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MULTI-MSMS UPN48_class_I_Rep_3 7 479.3078918457031 2 479.30821 956.601866 0.23143 0.00011093 0.11866 5.6875E-05 0.35009 0.0001678 479.3082562330097 62.497 0.37612 66.008 65.882 66.258 3.5104 30 24 2 0 0 0 0.82752 1 13897 13897 6.7232 0 1 74290 50627 1312 31657 31674 58299 58299 0.12182923719615246 VQKKTQIL 8 Unmodified _VQKKTQIL_ 0 0 0 nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 nc|ENSG00000088387|Q9BZ29-6|DOCK9 MSMS UPN48_class_I_Rep_3 7 478.97509765625 2 479.30821 956.601866 NaN NaN NaN NaN NaN NaN NaN 56.578 1 60.121 59.621 60.621 3.5427 0 0 0 0.40625 1 12098 12098 2.3027 0 1 50628 1312 31657 31674 58300 58300 0.12182923719615246 VQKNDILYK 9 Unmodified _VQKNDILYK_ 0 0 0 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 MULTI-MSMS UPN47_class_I_Rep_1 2 560.8218383789062 2 560.821681 1119.62881 -0.020779 -1.1653E-05 0.09186 5.1517E-05 0.071081 3.9864E-05 560.821640591771 39.619 0.5151 43.285 42.93 43.445 3.6668 56 38 2 0 0 0 0.43153 2 7717 7717;7755 6.2058 0 1 104810 50629 4944 31658 31675 58301;58302 58301 0.07377987540144204 VQKNDILYK 9 Unmodified _VQKNDILYK_ 0 0 0 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 MULTI-MSMS UPN47_class_I_Rep_2 3 560.8212890625 2 560.821681 1119.62881 0.045172 2.5333E-05 0.13129 7.3631E-05 0.17646 9.8964E-05 560.8216274155925 40.01 0.59559 43.381 43.082 43.677 3.3712 50 39 2 0 0 0 0.43153 2 7910 7910;7960 6.2058 0 1 71374 50630 4944 31658 31675 58303;58304 58303 0.07377987540144204 VQKNDILYK 9 Unmodified _VQKNDILYK_ 0 0 0 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 ENSG00000182261|ENST00000691676|NLRP10 MULTI-MSMS UPN47_class_I_Rep_3 4 560.820068359375 2 560.821681 1119.62881 -0.032823 -1.8408E-05 -0.32742 -0.00018362 -0.36024 -0.00020203 560.8215312795834 40.221 0.6566 43.459 43.033 43.689 3.2372 56 41 2 0 0 0 0.43153 2 8036 7967;8036 6.2058 0 1 80831 50631 4944 31658 31675 58305;58306 58306 0.07377987540144204 VQKNEAIAI 9 Unmodified _VQKNEAIAI_ 0 0 0 BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|27|2|sense BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|27|2|sense BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|27|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 493.2869873046875 2 493.287474 984.560395 -0.34792 -0.00017162 -0.41372 -0.00020408 -0.76164 -0.00037571 493.28716712292965 14.933 0.55087 18.408 18.26 18.811 3.475 136 64 3 0 0 0 0.50582 1 736 736 0 0 1 223890 50632 413 31659 31676 58307 58307 0.0674974296025539 VQKQNKNK 8 Unmodified _VQKQNKNK_ 0 0 0 REV__ENST00000534968.5_1_1:160514984-160515056:-|nuORF REV__ENST00000534968.5_1_1:160514984-160515056:-|nuORF MSMS UPN47_class_I_Rep_3 4 493.79022216796875 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 74.618 1 77.865 77.365 78.365 3.2464 0 0 0 0.40746 1 18476 18476 0.69038 0 1 + 50633 22880 31660 31677 58308 58308 0.07351680911654057 VQKSDVSI 8 Unmodified _VQKSDVSI_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 438.2447204589844 2 438.245275 874.475997 -0.28165 -0.00012343 -0.36547 -0.00016017 -0.64712 -0.0002836 438.2450316448654 43.92 0.52882 47.615 47.341 47.869 3.6951 53 33 2 0 0 0 0.82752 2 9047 9047;9128 6.7232 0 1 62600 50634 10556 31661 31678 58309;58310 58309 0.03373792143509036 VQKSDVSI 8 Unmodified _VQKSDVSI_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 438.245275 874.475997 -0.28165 -0.00012343 -0.36547 -0.00016017 -0.64712 -0.0002836 438.2450316448654 43.92 0.52882 47.615 47.341 47.869 3.6951 -0.14009 -2.6327E-05 NaN 6.7232 53 33 2 NaN NaN NaN NaN 0 NaN NaN 0 62600 50635 10556 31661 31678 0.03373792143509036 VQKSDVSI 8 Unmodified _VQKSDVSI_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|46|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 438.245275 874.475997 -0.57974 -0.00025407 -0.070647 -3.0961E-05 -0.65039 -0.00028503 438.2452017482394 44.539 0.081482 47.895 47.859 47.94 3.3556 0.14009 0.00023208 NaN 6.7232 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 25188 50636 10556 31661 31678 0.03373792143509036 VQKYDPEKD 9 Unmodified _VQKYDPEKD_ 0 0 0 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 ENSG00000198642|ENST00000359039|KLHL9 MULTI-MSMS UPN47_class_I_Rep_1 2 561.2772216796875 2 561.277303 1120.54005 0.075442 4.2344E-05 -0.084553 -4.7458E-05 -0.0091105 -5.1135E-06 561.2770737051151 44.057 0.69213 47.752 47.371 48.063 3.6951 89 44 3 0 0 0 0.47763 1 9134 9134 2.9952 0.26005 1 247600 50637 5445 31662 31679 58311 58311 -0.015394724901852896 VQKYVLPKF 9 Unmodified _VQKYVLPKF_ 0 0 0 ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 MSMS UPN48_class_I_Rep_1 5 561.3399658203125 2 561.33951 1120.66447 NaN NaN NaN NaN NaN NaN NaN 79.273 1 82.808 82.308 83.308 3.5352 0 0 0 0.39518 1 18918 18918 1.8442 0 1 50638 3853 31663 31680 58312 58312 0.10896069787804663 VQLATARPRPV 11 Unmodified _VQLATARPRPV_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MSMS UPN48_class_I_Rep_3 7 604.3670043945312 2 604.367121 1206.71969 NaN NaN NaN NaN NaN NaN NaN 119.32 1 122.89 122.39 123.39 3.566 0 0 0 0.38417 1 28359 28359 0 0 1 50639 4495 31664 31681 58313 58313 0.12459876308230378 VQLATRKQ 8 Unmodified _VQLATRKQ_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense MSMS UPN47_class_I_Rep_2 3 472.2877197265625 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 89.546 1 92.999 92.499 93.499 3.4525 0 0 0 0.40746 1 22247 22247 0.69038 0 1 50640 9018 31665 31682 58314 58314 0.08748582399982752 VQLATRKQ 8 Unmodified _VQLATRKQ_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.28851318359375 2 472.287808 942.561064 0.21127 9.9782E-05 -0.006656 -3.1435E-06 0.20462 9.6638E-05 472.2878422963877 85.999 0.96178 89.704 89.213 90.175 3.7058 462 113 5 0 0 0 0.82752 1 20351 20351 2.3027 0 1 12700000 50641 9018 31665 31682 58315 58315 0.08748582399982752 VQLATRKQ 8 Unmodified _VQLATRKQ_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|42|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.2881164550781 2 472.287808 942.561064 0.22964 0.00010845 -0.0042505 -2.0075E-06 0.22539 0.00010645 472.2878176896854 85.962 1.1338 89.733 89.257 90.39 3.7701 508 142 5 0 0 0 0.82752 1 20294 20294 2.3027 0 1 10760000 50642 9018 31665 31682 58316 58316 0.08748582399982752 VQLFKTNVR 9 Unmodified _VQLFKTNVR_ 0 0 0 REV__MLT1K_dup14839|chr17:2836658-2836977:-|1.043609152411341|0.0004148975347402|11.3|150.0|4|2|sense REV__MLT1K_dup14839|chr17:2836658-2836977:-|1.043609152411341|0.0004148975347402|11.3|150.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 552.8302001953125 2 552.82984 1103.64513 0.21072 0.00011649 -0.17228 -9.5241E-05 0.038445 2.1254E-05 552.8296781242598 44.897 0.76068 48.141 47.656 48.417 3.2441 67 47 2 0 0 0 0.38714 1 9461 9461 8.7454 0 1 91182 + 50643 31788 31666 31683 58317 58317 0.09745113496887825 VQLGAQSVY 9 Unmodified _VQLGAQSVY_ 0 0 0 REV__FLAM_C_dup15320|chr12:11776412-11776544:-|1.0086580898928277|0.0115146392962821|6.45|151.0|10|3|anti-sense REV__FLAM_C_dup15320|chr12:11776412-11776544:-|1.0086580898928277|0.0115146392962821|6.45|151.0|10|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.75830078125 2 482.758549 963.502546 0.23645 0.00011415 -0.40114 -0.00019365 -0.16469 -7.9504E-05 482.758350694121 46.785 0.50094 46.785 46.5 47.001 0 81 48 2 0 0 0 0.13244 4 9624 9590;9600;9624;9661 27.629 5.6898 1 179170 + 50644 23317 31667 31684 58318;58319;58320;58321 58320 0.019334810348595965 VQLGAQSVY 9 Unmodified _VQLGAQSVY_ 0 0 0 REV__FLAM_C_dup15320|chr12:11776412-11776544:-|1.0086580898928277|0.0115146392962821|6.45|151.0|10|3|anti-sense REV__FLAM_C_dup15320|chr12:11776412-11776544:-|1.0086580898928277|0.0115146392962821|6.45|151.0|10|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 482.758549 963.502546 0.23645 0.00011415 -0.40114 -0.00019365 -0.16469 -7.9504E-05 482.758350694121 46.785 0.50094 46.785 46.5 47.001 0 0 0 NaN 27.629 81 48 2 NaN NaN NaN NaN 0 NaN NaN 0 179170 + 50645 23317 31667 31684 0.019334810348595965 VQLGRLVQL 9 Unmodified _VQLGRLVQL_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.32763671875 2 513.326934 1024.63931 0.39062 0.00020051 -0.13585 -6.9737E-05 0.25476 0.00013078 513.3267935888516 59.812 0.59939 63.292 62.999 63.598 3.4801 81 47 2 0 0 0 0.074367 2 13146 13101;13146 39.957 0 1 303500 + 50646 31408 31668 31685 58322;58323 58323 0.12798014985219197 VQLGRLVQL 9 Unmodified _VQLGRLVQL_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_2 6 513.3271484375 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.736 1 63.223 62.723 63.723 3.4868 0 0 0 0.13551 1 13131 13131 20.454 0 1 + 50647 31408 31668 31685 58324 58324 0.12798014985219197 VQLGRLVQL 9 Unmodified _VQLGRLVQL_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 513.3272094726562 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.328 1 62.851 62.351 63.351 3.5231 0 0 0 0.38639 1 12940 12940 3.9444 0 1 + 50648 31408 31668 31685 58325 58325 0.12798014985219197 VQLGRLVQL 9 Unmodified _VQLGRLVQL_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 513.3270874023438 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.46 1 62.977 62.477 63.477 3.5169 0 0 0 0.031663 1 12979 12979 43.858 2.0187 1 + 50649 31408 31668 31685 58326 58326 0.12798014985219197 VQLGRLVQL 9 Unmodified _VQLGRLVQL_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 513.3270263671875 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.601 1 63.118 62.618 63.618 3.5169 0 0 0 0.066339 1 13022 13022 32.305 0 1 + 50650 31408 31668 31685 58327 58327 0.12798014985219197 VQLGRLVQL 9 Unmodified _VQLGRLVQL_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 513.3268432617188 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 59.732 1 63.249 62.749 63.749 3.5169 0 0 0 0.036836 1 13062 13062 41.84 0 1 + 50651 31408 31668 31685 58328 58328 0.12798014985219197 VQLHIKGH 8 Unmodified _VQLHIKGH_ 0 0 0 REV__ENSG00000149575|ENST00000278947|SCN2B REV__ENSG00000149575|ENST00000278947|SCN2B MSMS UPN47_class_I_Rep_2 3 466.27703857421875 2 466.277244 930.539935 NaN NaN NaN NaN NaN NaN NaN 110.79 1 114.32 113.82 114.82 3.5271 0 0 0 0.40746 1 26969 26969 0.69038 0 1 + 50652 19620 31669 31686 58329 58329 0.07188617091128435 VQLIAGYLR 9 Unmodified _VQLIAGYLR_ 0 0 0 REV__ENST00000492556.5_1_22:51020665-51020803:-|nuORF REV__ENST00000492556.5_1_22:51020665-51020803:-|nuORF MSMS UPN47_class_I_Rep_3 4 516.8154907226562 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 25.324 1 28.675 28.175 29.175 3.3509 0 0 0 0.39518 1 3542 3542 1.8442 0 1 + 50653 22569 31670 31687 58330 58330 0.09822326093899392 VQLISVLT 8 Unmodified _VQLISVLT_ 0 0 0 REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF MSMS UPN48_class_I_Rep_1 5 436.7747802734375 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 92.658 1 96.282 95.782 96.782 3.624 0 0 0 0.40746 1 22264 22264 0.69038 0 1 + 50654 22559 31671 31688 58331 58331 0.0969614356264401 VQLISVLT 8 Unmodified _VQLISVLT_ 0 0 0 REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF MSMS UPN48_class_I_Rep_1 5 436.7747497558594 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 93.642 1 97.263 96.763 97.763 3.6208 0 0 0 0.40746 1 22511 22511 0.69038 0 1 + 50655 22559 31671 31688 58332 58332 0.0969614356264401 VQLKNNAL 8 Unmodified _VQLKNNAL_ 0 0 0 REV__ENSG00000172061|ENST00000347624|LRRC15 REV__ENSG00000172061|ENST00000347624|LRRC15 MULTI-MSMS UPN48_class_I_Rep_1 5 450.268798828125 2 450.269084 898.523616 0.015263 6.8727E-06 -0.23348 -0.00010513 -0.21822 -9.8257E-05 450.2688868883001 50.97 0.59167 54.495 54.253 54.844 3.5246 49 35 2 0 0 0 0.82752 2 10453 10453;10515 9.3474 0 1 146670 + 50656 20434 31672 31689 58333;58334 58333 0.07029491134358068 VQLLAPVAY 9 Unmodified _VQLLAPVAY_ 0 0 0 MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|14|1|sense MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|14|1|sense MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 487.289794921875 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 37.446 1 37.446 36.946 37.946 0 0 0 0 0.39326 1 7043 7043 2.3027 0 1 50657 16078 31673 31690 58335 58335 0.0770383245398989 VQLLAPVAY 9 Unmodified _VQLLAPVAY_ 0 0 0 MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|14|1|sense MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|14|1|sense MER51-int_dup446|chr14:34445893-34446942:+|1.6988358851402143|0.1277811586508962|3.73|151.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 487.2899475097656 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 38.781 1 38.781 38.281 39.281 0 0 0 0 0.39326 1 7408 7408 2.3027 0 1 50658 16078 31673 31690 58336 58336 0.0770383245398989 VQLLWKMM 8 Unmodified _VQLLWKMM_ 0 0 0 L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|21|1|sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|21|1|sense L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|21|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 525.3036499023438 2 524.787741 1047.56093 0.10249 5.3788E-05 2.5948 0.0013617 2.6973 0.0014155 525.289553715157 61.303 0.086094 64.568 64.504 64.59 3.2654 6 5 2 0 0 0 0.72333 1 14385 14385 2.3027 0.24298 1 26565 50659 14173 31674 31691 58337 58337 0.039051230841096185 VQLNKNKN 8 Unmodified _VQLNKNKN_ 0 0 0 REV__L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|1|1|sense REV__L1PA16_dup7566|chr9:69080973-69082084:+|2.261517391623248|0.274354579865129|3.04|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 479.27752685546875 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 76.718 1 76.718 76.218 77.218 0 0 0 0 0.40625 1 17913 17913 2.3027 0 1 + 50660 29408 31675 31692 58338 58338 0.06031992020314192 VQLPEDELF 9 Unmodified _VQLPEDELF_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000124486.13,USP9X,chrX,+,I30.1,41197511,41198527|26|8.93|2|intron ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS UPN47_class_I_Rep_1 2 545.277587890625 2 545.276772 1088.53899 0.45713 0.00024926 -0.18684 -0.00010188 0.27029 0.00014738 545.2765947672067 78.861 0.56597 82.307 82.016 82.582 3.4456 95 52 2 0 0 0 0.36392 1 19681 19681 10.074 0 1 139450 50661 2468 31676 31693 58339 58339 -0.0017368685912515502 VQLQLNLL 8 Unmodified _VQLQLNLL_ 0 0 0 REV__L1MEf_dup4599|chr6:149365365-149366751:-|1.0725113075523796|0.2151116254967824|2.32|151.0|50|1|anti-sense REV__L1MEf_dup4599|chr6:149365365-149366751:-|1.0725113075523796|0.2151116254967824|2.32|151.0|50|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 470.7943420410156 2 470.794935 939.575317 -0.52259 -0.00024603 -0.32399 -0.00015253 -0.84658 -0.00039856 470.7948347684566 38.082 1.3075 41.323 40.839 42.146 3.2414 237 98 3 0 0 0 0.82752 1 7576 7576 2.5775 0 1 397470 + 50662 28636 31677 31694 58340 58340 0.10311234828270699 VQLRKKKK 8 Unmodified _VQLRKKKK_ 0 0 0 REV__HAL1_dup4588|chr3:58381268-58381820:+|1.0969861595837391|0.0121942684993006|6.49|151.0|18|3|sense REV__HAL1_dup4588|chr3:58381268-58381820:+|1.0969861595837391|0.0121942684993006|6.49|151.0|18|3|sense MSMS UPN48_class_I_Rep_2 6 514.3576049804688 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 114.95 1 118.61 118.11 119.11 3.6616 0 0 0 0.40746 1 27497 27497 0.69038 0 1 + 50663 23426 31678 31695 58341 58341 0.19030000493125954 VQLRRLSA 8 Unmodified _VQLRRLSA_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MSMS UPN47_class_I_Rep_3 4 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 55.676 1 58.854 58.354 59.354 3.1779 0 0 0 0.40404 1 12742 12742 5.2307 0 1 50664 2410 31679 31696 58342 58342 0.1039228863688777 VQLRVLNV 8 Unmodified _VQLRVLNV_ 0 0 0 ENSG00000115904.14,SOS1,chr2,-,I4.1,39056867,39058672|28|8.91|2|intron;ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904.14,SOS1,chr2,-,I4.1,39056867,39058672|28|8.91|2|intron ENSG00000115904.14,SOS1,chr2,-,I4.1,39056867,39058672|28|8.91|2|intron MSMS UPN47_class_I_Rep_2 3 470.7999572753906 2 470.800552 939.58655 NaN NaN NaN NaN NaN NaN NaN 55.311 1 58.621 58.121 59.121 3.3102 0 0 0 0.4044 1 12574 12574 4.756 0 1 50665 2149 31680 31697 58343 58343 0.11434056922405489 VQLRVVRR 8 Unmodified _VQLRVVRR_ 0 0 0 ENST00000282096.8_1_11:14665308-14793517:+|nuORF ENST00000282096.8_1_11:14665308-14793517:+|nuORF ENST00000282096.8_1_11:14665308-14793517:+|nuORF MSMS UPN48_class_I_Rep_2 6 513.33837890625 2 513.338167 1024.66178 NaN NaN NaN NaN NaN NaN NaN 76.726 1 80.338 79.838 80.838 3.6116 0 0 0 0.40746 1 18124 18124 0.69038 0 1 50666 6031 31681 31698 58344 58344 0.15043659173511514 VQLVIDVN 8 Unmodified _VQLVIDVN_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MSMS UPN47_class_I_Rep_2 3 450.2632141113281 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 72.268 1 75.565 75.065 76.065 3.2971 0 0 0 0.40501 1 17707 17707 3.9444 0 1 + 50667 17766 31682 31699 58345 58345 0.05906669040234647 VQLVIDVN 8 Unmodified _VQLVIDVN_ 0 0 0 REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron REV__ENSG00000066279.18,ASPM,chr1,-,I25.1,197088433,197089929|25|6.25|9|intron MSMS UPN47_class_I_Rep_3 4 450.2630310058594 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 72.263 1 75.49 74.99 75.99 3.2271 0 0 0 0.40501 1 17779 17779 3.9444 0 1 + 50668 17766 31682 31699 58346 58346 0.05906669040234647 VQLVKVDLWPI 11 Unmodified _VQLVKVDLWPI_ 0 0 0 REV__LTR12C_dup1362|chr7:131058608-131060217:+|2.0129697615234723|0.1050396094502644|4.26|151.0|83|3|anti-sense REV__LTR12C_dup1362|chr7:131058608-131060217:+|2.0129697615234723|0.1050396094502644|4.26|151.0|83|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 437.6021423339844 3 437.267463 1308.78056 -0.047954 -2.0969E-05 0.36434 0.00015931 0.31638 0.00013834 437.60198805366736 49.449 1.0454 52.974 52.563 53.608 3.5246 168 71 3 0 0 0 0.65439 2 10097 10064;10097 2.8433 1.5136 1 542560 + 50669 30798 31683 31700 58347;58348 58348 0.1385196856786024 VQLVKVDLWPI 11 Unmodified _VQLVKVDLWPI_ 0 0 0 REV__LTR12C_dup1362|chr7:131058608-131060217:+|2.0129697615234723|0.1050396094502644|4.26|151.0|83|3|anti-sense REV__LTR12C_dup1362|chr7:131058608-131060217:+|2.0129697615234723|0.1050396094502644|4.26|151.0|83|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 437.6018371582031 3 437.267463 1308.78056 0.050789 2.2208E-05 0.21933 9.5905E-05 0.27012 0.00011811 437.26740552767717 49.388 1.0293 53.105 52.729 53.758 3.7175 168 68 3 0 0 0 0.65891 1 10040 10040 2.4348 0.52841 1 411220 + 50670 30798 31683 31700 58349 58349 0.1385196856786024 VQLVKVDLWPI 11 Unmodified _VQLVKVDLWPI_ 0 0 0 REV__LTR12C_dup1362|chr7:131058608-131060217:+|2.0129697615234723|0.1050396094502644|4.26|151.0|83|3|anti-sense REV__LTR12C_dup1362|chr7:131058608-131060217:+|2.0129697615234723|0.1050396094502644|4.26|151.0|83|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 437.26739501953125 3 437.267463 1308.78056 0.050789 2.2208E-05 0.21933 9.5905E-05 0.27012 0.00011811 437.26740552767717 49.388 1.0293 53.105 52.729 53.758 3.7175 168 68 3 0 0 0 22.551 1 10088 10088 1.3296 0.55311 1 411220 + 50671 30798 31683 31700 58350 58350 0.1385196856786024 VQNKNSSYF 9 Unmodified _VQNKNSSYF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENST00000406999.2_1_6:153220048-153220141:+|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS UPN46_class_I_Rep_3 1 543.764404296875 2 543.764363 1085.51417 0.1385 7.5314E-05 0.049355 2.6837E-05 0.18786 0.00010215 543.764321230152 31.042 0.73719 31.042 30.749 31.486 0 104 59 2 0 0 0 0.066633 4 5135 5098;5135;5172;5203 41.84 17.819 1 243190 50672 5222;5291 31684 31701 58351;58352;58353;58354 58352 -0.025163219418118388 VQPLLVLM 8 Unmodified _VQPLLVLM_ 0 0 0 REV__ENSG00000131068|ENST00000253381|DEFB118 REV__ENSG00000131068|ENST00000253381|DEFB118 MSMS UPN47_class_I_Rep_3 4 456.78497314453125 2 456.782982 911.55141 NaN NaN NaN NaN NaN NaN NaN 20.959 1 24.309 23.809 24.809 3.3496 0 0 0 0.40738 1 2261 2261 0.79363 0 1 + 50673 18966 31685 31702 58355 58355 0.09209678070260452 VQPLTLAT 8 Unmodified _VQPLTLAT_ 0 0 0 ENSG00000165076|ENST00000350549|PRSS37 ENSG00000165076|ENST00000350549|PRSS37 ENSG00000165076|ENST00000350549|PRSS37 MSMS UPN48_class_I_Rep_3 7 421.75128173828125 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 80.789 1 84.453 83.953 84.953 3.6635 0 0 0 0.40157 1 19117 19117 7.2892 0 1 50674 4153 31686 31703 58356 58356 0.06383284011531032 VQPSSIRTV 9 Unmodified _VQPSSIRTV_ 0 0 0 REV__nc|ENSG00000166483|P30291-2|WEE1 REV__nc|ENSG00000166483|P30291-2|WEE1 MULTI-MSMS UPN47_class_I_Rep_2 3 493.7740478515625 2 493.785099 985.555644 0.27573 0.00013615 0.028973 1.4307E-05 0.30471 0.00015046 493.784960047103 50.215 0.56124 53.558 53.351 53.912 3.3431 51 27 3 0 0 0 0.38714 1 11088 11088 8.7454 0 1 115020 + 50675 20177 31687 31704 58357 58357 0.062288588175420045 VQPSSIRTV 9 Unmodified _VQPSSIRTV_ 0 0 0 REV__nc|ENSG00000166483|P30291-2|WEE1 REV__nc|ENSG00000166483|P30291-2|WEE1 MULTI-MSMS UPN47_class_I_Rep_3 4 493.774169921875 2 493.785099 985.555644 0.27152 0.00013407 0.025355 1.252E-05 0.29688 0.00014659 493.7850004417244 50.341 0.51527 53.567 53.348 53.863 3.2262 41 27 2 0 0 0 0.38714 1 11175 11175 8.7454 0 1 93542 + 50676 20177 31687 31704 58358 58358 0.062288588175420045 VQPVGVRG 8 Unmodified _VQPVGVRG_ 0 0 0 REV__ENST00000396103.7_1_22:45281369-45283909:-|nuORF REV__ENST00000396103.7_1_22:45281369-45283909:-|nuORF MSMS UPN48_class_I_Rep_1 5 406.24908447265625 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 82.052 1 85.628 85.128 86.128 3.5753 0 0 0 0.40746 1 19587 19587 0.69038 0 1 + 50677 22120 31688 31705 58359 58359 0.05836952791423755 VQPVLKLL 8 Unmodified _VQPVLKLL_ 0 0 0 MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|55|2|sense MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|55|2|sense MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|55|2|sense MSMS UPN48_class_I_Rep_2 6 454.8362731933594 2 455.310221 908.605889 NaN NaN NaN NaN NaN NaN NaN 24.7 1 28.336 27.836 28.836 3.6363 0 0 0 0.40746 1 2902 2902 0.69038 0 1 50678 16120 31689 31706 58360 58360 0.14793013213318318 VQPYIWVF 8 Unmodified _VQPYIWVF_ 0 0 0 L1PREC2_dup7012|chr17:72856977-72859117:-|2.9411863084663143|0.0125700640354029|7.87|151.0|129|3|anti-sense L1PREC2_dup7012|chr17:72856977-72859117:-|2.9411863084663143|0.0125700640354029|7.87|151.0|129|3|anti-sense L1PREC2_dup7012|chr17:72856977-72859117:-|2.9411863084663143|0.0125700640354029|7.87|151.0|129|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.2846069335938 2 526.284203 1050.55385 -0.11692 -6.1533E-05 0.038676 2.0355E-05 -0.078243 -4.1178E-05 526.2841149401479 31.949 0.61847 35.679 35.309 35.928 3.7293 63 47 2 0 0 0 0.82752 1 5349 5349 0.79363 0 1 77300 50679 15480 31690 31707 58361 58361 0.030598497995470098 VQQHPPSDI 9 Unmodified _VQQHPPSDI_ 0 0 0 REV__ENSG00000107611|ENST00000377833|CUBN REV__ENSG00000107611|ENST00000377833|CUBN MSMS UPN48_class_I_Rep_1 5 510.7585144042969 2 510.759081 1019.50361 NaN NaN NaN NaN NaN NaN NaN 51.044 1 54.569 54.069 55.069 3.5246 0 0 0 0.36505 1 10487 10487 7.2892 0 1 + 50680 18356 31691 31708 58362 58362 -0.005363045962326396 VQQKILAT 8 Unmodified _VQQKILAT_ 0 0 0 ENSG00000121931|ENST00000369763|LRIF1 ENSG00000121931|ENST00000369763|LRIF1 ENSG00000121931|ENST00000369763|LRIF1 MULTI-MSMS UPN47_class_I_Rep_2 3 450.7786560058594 2 450.779285 899.544017 -0.24932 -0.00011239 0.16642 7.5021E-05 -0.082891 -3.7365E-05 450.77923504288503 48.022 0.76893 51.371 51.143 51.912 3.3492 91 47 3 0 0 0 0.82752 1 10478 10478 2.5775 0 1 300140 50681 2371 31692 31709 58363 58363 0.09022661794188025 VQQKRVTK 8 Unmodified _VQQKRVTK_ 0 0 0 L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|33|3|sense L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|33|3|sense L1MD2_dup5409|chr9:37189687-37190614:-|1.697362802946318|0.0430412213870427|5.3|151.0|33|3|sense MSMS UPN48_class_I_Rep_1 5 493.8514404296875 2 493.808908 985.603263 NaN NaN NaN NaN NaN NaN NaN 114.77 1 118.4 117.9 118.9 3.6301 0 0 0 0.40746 1 27907 27907 0.69038 0 1 50682 12005 31693 31710 58364 58364 0.10988557808366295 VQQLLRLI 8 Unmodified _VQQLLRLI_ 0 0 0 REV__ENST00000369144.7_1_10:120819204-120820315:-|nuORF REV__ENST00000369144.7_1_10:120819204-120820315:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 491.8238220214844 2 491.824027 981.633501 0.19956 9.8147E-05 -0.42682 -0.00020992 -0.22726 -0.00011177 491.82360952526375 65.683 0.21815 68.863 68.702 68.92 3.1795 20 12 2 0 0 0 0.82752 1 15770 15770 2.3027 0 1 49737 + 50683 18355 31694 31711 58365 58365 0.14194916473547892 VQQNNTESF 9 Unmodified _VQQNNTESF_ 0 0 0 ENST00000538334.1_1_12:121764442-121765135:-|nuORF;ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5 ENST00000538334.1_1_12:121764442-121765135:-|nuORF ENST00000538334.1_1_12:121764442-121765135:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 533.7434692382812 2 533.743628 1065.4727 0.12508 6.6763E-05 -0.21871 -0.00011673 -0.093624 -4.9971E-05 533.7433827935843 32.127 0.3126 32.127 31.953 32.265 0 36 23 2 0 0 0 0.46869 1 5480 5480 3.9444 1.6417 1 64107 50684 1328 31695 31712 58366 58366 -0.0574150270113023 VQQPGQTNF 9 Unmodified _VQQPGQTNF_ 0 0 0 nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS UPN46_class_I_Rep_3 1 509.75152587890625 2 509.751256 1017.48796 NaN NaN NaN NaN NaN NaN NaN 39.262 1 39.262 38.762 39.762 0 0 0 0 0.11827 1 7533 7533 21.537 6.6987 1 50685 2222 31696 31713 58367 58367 -0.020085911132923684 VQQRYLSYR 9 Unmodified _VQQRYLSYR_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS UPN46_class_I_Rep_3 1 404.8876647949219 3 404.887645 1211.64111 -0.13076 -5.2942E-05 0.26987 0.00010927 0.13912 5.6327E-05 404.88761028021486 33.014 0.50026 33.014 32.785 33.286 0 44 36 2 0 0 0 0.43892 1 5713 5713 5.7834 0.88642 1 49687 50686 4789 31697 31714 58368 58368 0.04375024003161343 VQRALHFV 8 Unmodified _VQRALHFV_ 0 0 0 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant;ENSG00000170369|ENST00000304725|CST2 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant MSMS UPN48_class_I_Rep_1 5 485.2847900390625 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 36.032 1 39.542 39.042 40.042 3.5101 0 0 0 0.40738 1 5969 5969 0.79363 0 1 50687 656 31698 31715 58369 58369 0.07004903608185487 VQRALHFV 8 Unmodified _VQRALHFV_ 0 0 0 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant;ENSG00000170369|ENST00000304725|CST2 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant MSMS UPN48_class_I_Rep_1 5 485.2855224609375 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 40.276 1 43.781 43.281 44.281 3.5048 0 0 0 0.40738 1 7211 7211 0.79363 0 1 50688 656 31698 31715 58370 58370 0.07004903608185487 VQRALHFV 8 Unmodified _VQRALHFV_ 0 0 0 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant;ENSG00000170369|ENST00000304725|CST2 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant MSMS UPN48_class_I_Rep_1 5 485.2856140136719 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 54.508 1 58.022 57.522 58.522 3.5143 0 0 0 0.40738 1 11548 11548 0.79363 0 1 50689 656 31698 31715 58371 58371 0.07004903608185487 VQRALHFV 8 Unmodified _VQRALHFV_ 0 0 0 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant;ENSG00000170369|ENST00000304725|CST2 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant MSMS UPN48_class_I_Rep_1 5 485.2861633300781 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 55.654 1 59.162 58.662 59.662 3.5082 0 0 0 0.40738 1 11900 11900 0.79363 0 1 50690 656 31698 31715 58372 58372 0.07004903608185487 VQRALHFV 8 Unmodified _VQRALHFV_ 0 0 0 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant;ENSG00000170369|ENST00000304725|CST2 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant MSMS UPN48_class_I_Rep_3 7 484.95330810546875 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 36.881 1 40.544 40.044 41.044 3.663 0 0 0 0.40738 1 6153 6153 0.79363 0 1 50691 656 31698 31715 58373 58373 0.07004903608185487 VQRALHFV 8 Unmodified _VQRALHFV_ 0 0 0 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant;ENSG00000170369|ENST00000304725|CST2 CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant CST2|p.E54K|1|0.53|ENSG00000170369|chr20:23826501-23826501|C/T|missense_variant MSMS UPN48_class_I_Rep_3 7 485.2852783203125 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 42.995 1 46.637 46.137 47.137 3.6415 0 0 0 0.40738 1 7947 7947 0.79363 0 1 50692 656 31698 31715 58374 58374 0.07004903608185487 VQRGLDGR 8 Unmodified _VQRGLDGR_ 0 0 0 ENSG00000016391|ENST00000315251|CHDH ENSG00000016391|ENST00000315251|CHDH ENSG00000016391|ENST00000315251|CHDH MULTI-MSMS UPN48_class_I_Rep_1 5 450.7537536621094 2 450.754133 899.493713 0.0068439 3.0849E-06 -0.3161 -0.00014248 -0.30926 -0.0001394 450.7538744763393 102.05 0.5972 105.66 105.36 105.96 3.612 133 83 2 0 0 0 0.82752 1 24603 24603 2.3027 0 1 219440 50693 800 31699 31716 58375 58375 0.03994552189033129 VQRGLDGR 8 Unmodified _VQRGLDGR_ 0 0 0 ENSG00000016391|ENST00000315251|CHDH ENSG00000016391|ENST00000315251|CHDH ENSG00000016391|ENST00000315251|CHDH MULTI-MSMS UPN48_class_I_Rep_3 7 450.7540283203125 2 450.754133 899.493713 0.16653 7.5065E-05 -0.32477 -0.00014639 -0.15824 -7.1327E-05 450.7538716382016 101.83 0.5373 105.6 105.42 105.96 3.776 130 77 2 0 0 0 0.82752 1 24097 24097 2.3027 0 1 210840 50694 800 31699 31716 58376 58376 0.03994552189033129 VQRKHLAS 8 Unmodified _VQRKHLAS_ 0 0 0 REV__nc|ENSG00000012124|P20273-2|CD22 REV__nc|ENSG00000012124|P20273-2|CD22 MSMS UPN46_class_I_Rep_3 1 469.7792053222656 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 88.123 1 88.123 87.623 88.623 0 0 0 0 0.40746 1 21148 21148 0.69038 0 1 + 50695 17584 31700 31717 58377 58377 0.07447715602779681 VQRLRRGF 8 Unmodified _VQRLRRGF_ 0 0 0 REV__FLAM_C_dup14202|chr11:2314038-2314177:+|2.135219653261423|0.0783172736100778|4.77|151.0|4|2|sense REV__FLAM_C_dup14202|chr11:2314038-2314177:+|2.135219653261423|0.0783172736100778|4.77|151.0|4|2|sense MSMS UPN48_class_I_Rep_3 7 516.31689453125 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 73.093 1 76.63 76.13 77.13 3.5373 0 0 0 0.4044 1 17084 17084 4.756 0 1 + 50696 23316 31701 31718 58378 58378 0.10074799622361752 VQRNHETAF 9 Unmodified _VQRNHETAF_ 0 0 0 ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 MULTI-MSMS UPN46_class_I_Rep_3 1 551.2753295898438 2 551.275429 1100.53631 -0.049281 -2.7168E-05 0.019633 1.0823E-05 -0.029649 -1.6345E-05 551.2753552214219 21.253 1.077 21.253 20.836 21.913 0 267 122 3 0 0 0 0.0063213 6 2350 2250;2266;2350;2383;2448;2453 89.401 43.38 1 245570 50697 3295 31702 31719 58379;58380;58381;58382;58383;58384 58381 -0.009940974733808616 VQRNHETAF 9 Unmodified _VQRNHETAF_ 0 0 0 ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1 ENSG00000143384|ENST00000369026|MCL1 ENSG00000143384|ENST00000369026|MCL1 MULTI-MSMS UPN46_class_I_Rep_3 1 551.2752075195312 2 551.275429 1100.53631 -0.032753 -1.8056E-05 1.086 0.00059869 1.0533 0.00058064 551.2753901360026 22.046 0.26431 22.046 21.937 22.201 0 47 29 2 0 0 0 0.36392 1 2553 2553 10.074 3.3508 1 40497 50698 3295 31702 31719 58385 58385 -0.009940974733808616 VQRRRFNERRR 11 Unmodified _VQRRRFNERRR_ 0 0 0 REV__L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|17|1|sense REV__L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|17|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 525.1409301757812 3 524.973329 1571.89816 0.28647 0.00015039 0.36038 0.00018919 0.64685 0.00033958 525.3075559390021 48.102 0.32967 48.102 48.009 48.339 0 42 34 2 0 0 0 22.551 1 10041 10041 0.094841 0 1 193710 + 50699 25314 31703 31720 58386 58386 0.13508358999865777 VQRRRRDQ 8 Unmodified _VQRRRRDQ_ 0 0 0 REV__L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|80|3|sense REV__L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|80|3|sense MSMS UPN47_class_I_Rep_2 3 557.3202514648438 2 557.321037 1112.62752 NaN NaN NaN NaN NaN NaN NaN 99.262 1 102.75 102.25 103.25 3.4897 0 0 0 0.40746 1 24308 24308 0.69038 0 1 + 50700 28862 31704 31721 58387 58387 0.07571211014578694 VQRRRRDQ 8 Unmodified _VQRRRRDQ_ 0 0 0 REV__L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|80|3|sense REV__L1P2_dup894|chr9:105515392-105519740:+|1.0063922232092073|0.109708697576245|3.2|151.0|80|3|sense MSMS UPN47_class_I_Rep_3 4 557.3197631835938 2 557.321037 1112.62752 NaN NaN NaN NaN NaN NaN NaN 99.518 1 102.97 102.47 103.47 3.4483 0 0 0 0.40746 1 24605 24605 0.69038 0 1 + 50701 28862 31704 31721 58388 58388 0.07571211014578694 VQRRRRDRQ 9 Unmodified _VQRRRRDRQ_ 0 0 0 REV__ENST00000469867.1_1_2:24303770-24318159:+|nuORF REV__ENST00000469867.1_1_2:24303770-24318159:+|nuORF MSMS UPN46_class_I_Rep_3 1 635.3701171875 2 635.371592 1268.72863 NaN NaN NaN NaN NaN NaN NaN 97.581 1 97.581 97.081 98.081 0 0 0 0 0.4007 1 23748 23748 0.52476 0 1 + 50702 22498 31705 31722 58389 58389 0.1050166271731996 VQRSGNYF 8 Unmodified _VQRSGNYF_ 0 0 0 nc|ENSG00000072041|Q9H2J7-3|SLC6A15;ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000072041|ENST00000266682|SLC6A15 nc|ENSG00000072041|Q9H2J7-3|SLC6A15 nc|ENSG00000072041|Q9H2J7-3|SLC6A15 MSMS UPN48_class_I_Rep_2 6 485.740966796875 2 485.740691 969.466829 NaN NaN NaN NaN NaN NaN NaN 32.285 1 35.935 35.435 36.435 3.6497 0 0 0 0.40581 1 4969 4969 2.8892 0 1 50703 1094 31706 31723 58390 58390 -0.019125564221440072 VQRVRHST 8 Unmodified _VQRVRHST_ 0 0 0 REV__MER65C_dup147|chr3:136685799-136686256:-|1.4074731438825523|0.0069263967924015|7.67|150.0|30|3|anti-sense REV__MER65C_dup147|chr3:136685799-136686256:-|1.4074731438825523|0.0069263967924015|7.67|150.0|30|3|anti-sense MSMS UPN47_class_I_Rep_2 3 491.780029296875 2 491.780682 981.546811 NaN NaN NaN NaN NaN NaN NaN 68.407 1 71.677 71.177 72.177 3.2696 0 0 0 0.40746 1 16554 16554 0.69038 0 1 + 50704 31526 31707 31724 58391 58391 0.05529929971692127 VQRWHWQKK 9 Unmodified _VQRWHWQKK_ 0 0 0 nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO nc|ENSG00000117009|O15229-3|KMO nc|ENSG00000117009|O15229-3|KMO MSMS UPN46_class_I_Rep_3 1 648.3622436523438 2 648.359631 1294.70471 NaN NaN NaN NaN NaN NaN NaN 47.874 1 47.874 47.374 48.374 0 0 0 0 0.4007 1 9931 9931 0.52476 0.066424 1 50705 2207 31708 31725 58392 58392 0.06914429230891983 VQSALIPPN 9 Unmodified _VQSALIPPN_ 0 0 0 REV__AluJb_dup13274|chr2:32372562-32372858:+|1.168541767963695|0.0036538370427667|8.32|151.0|13|1|anti-sense REV__AluJb_dup13274|chr2:32372562-32372858:+|1.168541767963695|0.0036538370427667|8.32|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_2 6 469.7710266113281 2 469.768917 937.523281 NaN NaN NaN NaN NaN NaN NaN 54.806 1 58.388 57.888 58.888 3.5817 0 0 0 0.38784 1 11620 11620 3.5965 0 1 + 50706 16926 31709 31726 58393 58393 0.0520207141452147 VQSCSAITST 10 Unmodified _VQSCSAITST_ 0 0 0 REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 498.7359619140625 2 498.736957 995.459361 -0.31848 -0.00015884 -0.0069305 -3.4565E-06 -0.32541 -0.00016229 498.7368599051347 18.291 1.9346 21.872 20.151 22.086 3.5806 314 228 2 0 0 0 0.56543 1 1277 1277 0 0 1 78689 + 50707 19814 31710 31727 58394 58394 -0.03855076804768487 VQSKKIKY 8 Unmodified _VQSKKIKY_ 0 0 0 L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|16|2|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|16|2|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 497.30816650390625 2 497.30821 992.601866 NaN NaN NaN NaN NaN NaN NaN 15.843 1 19.229 18.729 19.729 3.3864 0 0 0 0.40738 1 911 911 0.79363 0 1 50708 10002 31711 31728 58395 58395 0.105269237196012 VQSLRQELY 9 Unmodified _VQSLRQELY_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS UPN48_class_I_Rep_1 5 568.30908203125 2 568.308938 1134.60332 0.41264 0.00023451 0.25144 0.00014289 0.66408 0.0003774 568.3089576475708 50.53 0.63787 54.054 53.789 54.427 3.5246 87 42 3 0 0 0 0.30034 1 10317 10317 13.906 0.86358 1 185900 50709 3865 31712 31729 58396 58396 0.04140513017705416 VQSPKRGK 8 Unmodified _VQSPKRGK_ 0 0 0 REV__LTR16A2_dup1153|chr11:33862043-33862237:-|2.584294870112116|0.2068531914292936|3.64|151.0|11|2|anti-sense REV__LTR16A2_dup1153|chr11:33862043-33862237:-|2.584294870112116|0.2068531914292936|3.64|151.0|11|2|anti-sense MSMS UPN46_class_I_Rep_3 1 450.27447509765625 2 450.274701 898.534849 NaN NaN NaN NaN NaN NaN NaN 90.706 1 90.706 90.206 91.206 0 0 0 0 0.40604 1 21877 21877 2.5775 0 1 + 50710 30850 31713 31730 58397 58397 0.08152313228515595 VQSWPIFWP 9 Unmodified _VQSWPIFWP_ 0 0 0 REV__L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|76|1|anti-sense REV__L1MEc_dup847|chr1:119188799-119190300:-|1.1987582907892051|0.3181127635147845|1.91|151.0|76|1|anti-sense MSMS UPN47_class_I_Rep_2 3 580.2981567382812 2 580.300384 1158.58622 NaN NaN NaN NaN NaN NaN NaN 102.44 1 105.96 105.46 106.46 3.5151 0 0 0 0.39326 1 24942 24942 2.3027 0 1 + 50711 28487 31714 31731 58398 58398 0.013266372025782402 VQTALRVR 8 Unmodified _VQTALRVR_ 0 0 0 REV__ENST00000371817.7_1_9:137659174-137671969:+|nuORF REV__ENST00000371817.7_1_9:137659174-137671969:+|nuORF MSMS UPN47_class_I_Rep_1 2 471.7947692871094 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 119.51 1 123.12 122.62 123.62 3.6036 0 0 0 0.40746 1 29701 29701 0.69038 0 1 + 50712 21967 31715 31732 58399 58399 0.1039228863688777 VQTEIEIT 8 Unmodified _VQTEIEIT_ 0 0 0 REV__nc|ENSG00000100170|P13866-2|SLC5A1 REV__nc|ENSG00000100170|P13866-2|SLC5A1 MULTI-MSMS UPN47_class_I_Rep_3 4 466.74969482421875 2 466.75039 931.486227 -0.067681 -3.159E-05 -0.056737 -2.6482E-05 -0.12442 -5.8072E-05 466.75036687928946 66.368 0.57635 69.554 69.32 69.897 3.1853 72 43 2 0 0 0 0.82752 1 16066 16066 4.3292 0 1 123430 + 50713 18093 31716 31733 58400 58400 0.017743550780778605 VQTKKVRK 8 Unmodified _VQTKKVRK_ 0 0 0 ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884|TCF4;ENSG00000196628|ENST00000354452|TCF4;ENST00000566376.3_1_18:52999491-53018213:-|nuORF;ENST00000563686.5_1_18:52937038-53128316:-|nuORF ENST00000562680.5_1_18:52899738-53018213:-|nuORF ENST00000562680.5_1_18:52899738-53018213:-|nuORF MSMS UPN48_class_I_Rep_3 7 493.7811584472656 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 77.182 1 80.784 80.284 81.284 3.6016 0 0 0 0.40625 1 18216 18216 2.3027 0 1 50714 5324 31717 31734 58401 58401 0.14625434705078533 VQTLLKLI 8 Unmodified _VQTLLKLI_ 0 0 0 L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|115|2|sense L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|115|2|sense L1PA7_dup3813|chr4:168934985-168941034:+|1.291493543897876|0.0908417003206841|3.83|149.0|115|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 464.314697265625 2 464.315503 926.616454 -0.32004 -0.0001486 -0.22433 -0.00010416 -0.54437 -0.00025276 464.31527881422824 43.106 1.2618 46.464 46.091 47.353 3.358 176 78 3 0 0 0 0.82752 1 8792 8792 18.135 0 1 387450 50715 14810 31718 31735 58402 58402 0.15020995867757847 VQTRHTEEEP 10 Unmodified _VQTRHTEEEP_ 0 0 0 REV__ENST00000585574.5_1_17:73837076-73839803:-|nuORF REV__ENST00000585574.5_1_17:73837076-73839803:-|nuORF MSMS UPN48_class_I_Rep_2 6 613.2942504882812 2 613.294016 1224.57348 NaN NaN NaN NaN NaN NaN NaN 25.064 1 28.7 28.2 29.2 3.6363 0 0 0 0.53105 1 3000 3000 1.6526 0 1 + 50716 18041 31719 31736 58403 58403 -0.029824707183024657 VQVELIPEKKG 11 Unmodified _VQVELIPEKKG_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000494722.1_1_7:2314657-2354074:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MSMS UPN47_class_I_Rep_3 4 620.3714599609375 2 620.368995 1238.72344 NaN NaN NaN NaN NaN NaN NaN 87.6 1 90.987 90.487 91.487 3.3873 0 0 0 0.38417 1 21955 21955 2.2828 0 1 50717 1777 31720 31737 58404 58404 0.11362501291432636 VQVFVGVPV 9 Unmodified _VQVFVGVPV_ 0 0 0 L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense MSMS UPN46_class_I_Rep_3 1 472.282470703125 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 97.598 1 97.598 97.098 98.098 0 0 0 0 0.39428 1 23753 23753 2.0598 0.21551 1 50718 10654 31721 31738 58405 58405 0.08027849799566411 VQVFVGVPV 9 Unmodified _VQVFVGVPV_ 0 0 0 L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_1 2 472.2830810546875 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 93.196 1 96.932 96.432 97.432 3.736 0 0 0 0.39428 1 23191 23191 2.0598 0.21551 1 50719 10654 31721 31738 58406 58406 0.08027849799566411 VQVFVGVPV 9 Unmodified _VQVFVGVPV_ 0 0 0 L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_1 5 472.2832336425781 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 92.64 1 96.264 95.764 96.764 3.624 0 0 0 0.39428 1 22260 22260 2.0598 0.21551 1 50720 10654 31721 31738 58407 58407 0.08027849799566411 VQVFVGVPV 9 Unmodified _VQVFVGVPV_ 0 0 0 L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_3 7 472.28302001953125 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 92.433 1 96.311 95.811 96.811 3.8782 0 0 0 0.39428 1 21913 21913 2.0598 0.21551 1 50721 10654 31721 31738 58408 58408 0.08027849799566411 VQVGETSL 8 Unmodified _VQVGETSL_ 0 0 0 MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|31|3|sense MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|31|3|sense MER11A_dup524|chr8:132723826-132724841:-|1.3032277063466733|0.062785777469291|4.38|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 416.7239074707031 2 416.724175 831.433798 -1.1929 -0.00049712 0.12607 5.2537E-05 -1.0668 -0.00044458 416.72432455934774 35.274 0.65069 38.538 38.276 38.927 3.2639 65 46 2 0 0 0 0.82752 1 6514 6514 15.847 0 1 66180 50722 15784 31722 31739 58409 58409 0.011338167351482298 VQVHKMKA 8 Unmodified _VQVHKMKA_ 0 0 0 ENSG00000110719|ENST00000265686|TCIRG1;nc|ENSG00000110719|Q13488-2|TCIRG1 ENSG00000110719|ENST00000265686|TCIRG1 ENSG00000110719|ENST00000265686|TCIRG1 MULTI-SECPEP UPN46_class_I_Rep_3 1 470.2726135253906 2 470.77348 939.532406 0.24131 0.0001136 0.23136 0.00010892 0.47267 0.00022252 470.7736821901856 86.597 0.29916 86.597 86.455 86.754 0 47 33 2 0 0 0 0.72333 1 20703 20703 4.756 4.756 1 863320 50723 1950 31723 31740 58410 58410 0.06022141499192912 VQVHQSDVDL 10 Unmodified _VQVHQSDVDL_ 0 0 0 L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|234|1|anti-sense L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|234|1|anti-sense L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|234|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.2881469726562 2 570.288202 1138.56185 0.14412 8.2188E-05 -0.065332 -3.7258E-05 0.078785 4.493E-05 570.2881183078819 26.803 0.81432 26.803 26.556 27.37 0 133 64 3 0 0 0 0.56118 1 3836 3836 2.9952 0.26005 1 195400 50724 14616 31724 31741 58411 58411 -0.0018866774159960187 VQVHVKFRF 9 Unmodified _VQVHVKFRF_ 0 0 0 REV__L1PA17_dup3639|chr12:110306347-110306736:-|1.0635497154628375|0.0097454787359583|6.77|151.0|20|2|anti-sense REV__L1PA17_dup3639|chr12:110306347-110306736:-|1.0635497154628375|0.0097454787359583|6.77|151.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 580.3397216796875 2 580.340375 1158.6662 NaN NaN NaN NaN NaN NaN NaN 97.44 1 97.44 96.94 97.94 0 0 0 0 0.39428 1 23709 23709 2.0598 0 1 + 50725 29470 31725 31742 58412 58412 0.09321123596396319 VQVILPPRP 9 Unmodified _VQVILPPRP_ 0 0 0 AluJr_dup35013|chr7:139996031-139996261:-|1.1912228808612195|0.0106880181716597|6.8|151.0|10|1|anti-sense;FRAM_dup6107|chr17:411388-411553:+|1.0538766680967635|0.0591872930084379|4.15|148.0|10|2|anti-sense;AluSz_dup67227|chr12:51138141-51138456:-|1.1342541194271705|0.0214453695305986|5.72|151.0|14|1|anti-sense AluJr_dup35013|chr7:139996031-139996261:-|1.1912228808612195|0.0106880181716597|6.8|151.0|10|1|anti-sense AluJr_dup35013|chr7:139996031-139996261:-|1.1912228808612195|0.0106880181716597|6.8|151.0|10|1|anti-sense MSMS UPN47_class_I_Rep_2 3 509.8222961425781 2 509.824027 1017.6335 NaN NaN NaN NaN NaN NaN NaN 95.947 1 99.423 98.923 99.923 3.4753 0 0 0 0.39518 1 23601 23601 1.8442 0.19162 1 50726 146 31726 31743 58413 58413 0.12538916473556583 VQVKEGTL 8 Unmodified _VQVKEGTL_ 0 0 0 L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|42|3|sense L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|42|3|sense L1ME1_dup25548|chr15:30754563-30756036:-|1.5103670811846237|0.0685836156526987|4.46|151.0|42|3|sense MSMS UPN48_class_I_Rep_1 5 437.2571105957031 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 90.045 1 93.67 93.17 94.17 3.6255 0 0 0 0.40625 1 21641 21641 2.3027 0 1 50727 12329 31727 31744 58414 58414 0.05538382523195651 VQVKNQEL 8 Unmodified _VQVKNQEL_ 0 0 0 REV__L1ME2_dup2895|chr3:123240242-123240801:-|1.319566426178273|0.1698157566484834|2.96|151.0|14|2|sense REV__L1ME2_dup2895|chr3:123240242-123240801:-|1.319566426178273|0.1698157566484834|2.96|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 479.2716064453125 2 479.271824 956.529095 NaN NaN NaN NaN NaN NaN NaN 35.442 1 35.442 34.942 35.942 0 0 0 0 0.40643 1 6453 6453 2.0598 0 1 + 50728 27854 31728 31745 58415 58415 0.04909169926179402 VQVKRPRKVVI 11 Unmodified _VQVKRPRKVVI_ 0 0 0 REV__nc|ENSG00000119139|Q9UDY2-4|TJP2 REV__nc|ENSG00000119139|Q9UDY2-4|TJP2 MSMS UPN47_class_I_Rep_1 2 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.5 1 47.187 46.687 47.687 3.6875 0 0 0 0.38417 1 8951 8951 0.094841 0 1 + 50729 18666 31729 31746 58416 58416 0.22417277055819795 VQVKRRVTH 9 Unmodified _VQVKRRVTH_ 0 0 0 Tigger1_dup11329|chr18:76949957-76952264:-|1.0460229162700496|0.1398407285834437|2.9|150.0|30|2|sense Tigger1_dup11329|chr18:76949957-76952264:-|1.0460229162700496|0.1398407285834437|2.9|150.0|30|2|sense Tigger1_dup11329|chr18:76949957-76952264:-|1.0460229162700496|0.1398407285834437|2.9|150.0|30|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 561.8450317382812 2 561.846356 1121.67816 0.49237 0.00027664 -0.89724 -0.00050411 -0.40486 -0.00022747 561.8456425302481 87.617 0.22681 91.345 91.25 91.477 3.7279 33 25 2 0 0 0 0.50088 1 20872 20872 0.52476 0 1 171850 50730 33013 31730 31747 58417 58417 0.12218740339585565 VQVKRRVTH 9 Unmodified _VQVKRRVTH_ 0 0 0 Tigger1_dup11329|chr18:76949957-76952264:-|1.0460229162700496|0.1398407285834437|2.9|150.0|30|2|sense Tigger1_dup11329|chr18:76949957-76952264:-|1.0460229162700496|0.1398407285834437|2.9|150.0|30|2|sense Tigger1_dup11329|chr18:76949957-76952264:-|1.0460229162700496|0.1398407285834437|2.9|150.0|30|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.8460693359375 2 561.846356 1121.67816 0.44424 0.0002496 -1.5803 -0.00088786 -1.136 -0.00063827 561.845353749162 87.532 0.14964 91.322 91.205 91.355 3.7905 21 17 2 0 0 0 0.50088 1 20771 20771 0.52476 0 1 69837 50731 33013 31730 31747 58418 58418 0.12218740339585565 VQVKYLSRVF 10 Unmodified _VQVKYLSRVF_ 0 0 0 REV__ENSG00000113212|ENST00000231137|PCDHB7 REV__ENSG00000113212|ENST00000231137|PCDHB7 MSMS UPN46_class_I_Rep_3 1 619.869384765625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 90.714 1 90.714 90.214 91.214 0 0 0 0 0.53105 1 21879 21879 13.042 2.9685 1 + 50732 18497 31731 31748 58419 58419 0.10894242219501393 VQVKYLSRVF 10 Unmodified _VQVKYLSRVF_ 0 0 0 REV__ENSG00000113212|ENST00000231137|PCDHB7 REV__ENSG00000113212|ENST00000231137|PCDHB7 MSMS UPN46_class_I_Rep_3 1 619.8695678710938 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 90.834 1 90.834 90.334 91.334 0 0 0 0 0.53105 1 21913 21913 8.7454 0.58988 1 + 50733 18497 31731 31748 58420 58420 0.10894242219501393 VQVKYLSRVF 10 Unmodified _VQVKYLSRVF_ 0 0 0 REV__ENSG00000113212|ENST00000231137|PCDHB7 REV__ENSG00000113212|ENST00000231137|PCDHB7 MSMS UPN48_class_I_Rep_2 6 619.869140625 2 619.866423 1237.71829 NaN NaN NaN NaN NaN NaN NaN 87.118 1 90.835 90.335 91.335 3.7171 0 0 0 0.53105 1 20724 20724 3.2813 0.28607 1 + 50734 18497 31731 31748 58421 58421 0.10894242219501393 VQVLEQLT 8 Unmodified _VQVLEQLT_ 0 0 0 nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF nc|ENSG00000163913|Q9HBG6-7|IFT122 nc|ENSG00000163913|Q9HBG6-7|IFT122 MULTI-MSMS UPN46_class_I_Rep_3 1 465.2703857421875 2 465.26875 928.522947 0.22754 0.00010587 -0.14231 -6.6213E-05 0.085229 3.9654E-05 465.27032224365297 103.97 0.54346 103.97 103.81 104.36 0 189 55 6 0 0 0 0.82752 1 25452 25452 0.79363 0 1 4396600 50735 4056 31732 31749 58422 58422 0.055826516946467564 VQVLLPLV 8 Unmodified _VQVLLPLV_ 0 0 0 L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.79913330078125 2 440.796946 879.57934 -0.65987 -0.00029087 2.7072 0.0011933 2.0473 0.00090246 440.7996375393973 41.989 0.99158 45.35 44.702 45.694 3.3611 107 77 2 0 0 0 0.82752 1 8532 8532 2.5775 0 1 73799 50736 11342 31733 31750 58423 58423 0.1347332432200119 VQVLLPLV 8 Unmodified _VQVLLPLV_ 0 0 0 L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7993469238281 2 440.796946 879.57934 -0.51917 -0.00022885 4.2147 0.0018578 3.6956 0.001629 440.79961554249644 46.166 0.97872 49.41 48.593 49.572 3.2441 98 58 2 0 0 0 0.82752 1 9810 9810 0.79363 0 1 208100 50737 11342 31733 31750 58424 58424 0.1347332432200119 VQVLLPLV 8 Unmodified _VQVLLPLV_ 0 0 0 L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense L1MC3_dup4593|chr6:37997981-38000000:+|1.8049288274448327|0.0332850057261279|5.76|151.0|99|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.13155 5.7987E-05 3.4229 0.0015088 3.5545 0.0015668 440.7992058446007 45.25 0.27965 45.25 45.063 45.343 0 -0.050261 0.00037613 NaN 2.5775 40 27 2 NaN NaN NaN NaN 0 NaN NaN 0 115480 50738 11342 31733 31750 0.1347332432200119 VQVQRPKKQQ 10 Unmodified _VQVQRPKKQQ_ 0 0 0 MLT2B4_dup827|chr3:87869494-87869903:-|1.0725113075523796|0.0012062064660876|9.8|128.0|29|2|anti-sense MLT2B4_dup827|chr3:87869494-87869903:-|1.0725113075523796|0.0012062064660876|9.8|128.0|29|2|anti-sense MLT2B4_dup827|chr3:87869494-87869903:-|1.0725113075523796|0.0012062064660876|9.8|128.0|29|2|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8697509765625 2 619.870028 1237.7255 NaN NaN NaN NaN NaN NaN NaN 85.073 1 88.766 88.266 89.266 3.6937 0 0 0 0.53105 1 20231 20231 1.4819 0 1 50739 16514 31734 31751 58425 58425 0.11614974819917734 VQVRIAFP 8 Unmodified _VQVRIAFP_ 0 0 0 ENST00000503670.5_1_6:30854463-30854742:+|nuORF ENST00000503670.5_1_6:30854463-30854742:+|nuORF ENST00000503670.5_1_6:30854463-30854742:+|nuORF MSMS UPN48_class_I_Rep_3 7 465.2705078125 2 465.281995 928.549437 NaN NaN NaN NaN NaN NaN NaN 99.379 1 103.26 102.76 103.76 3.8839 0 0 0 0.39408 1 23537 23537 10.183 4.423 1 50740 7141 31735 31752 58426 58426 0.08230385376646154 VQVRINLA 8 Unmodified _VQVRINLA_ 0 0 0 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 MSMS UPN47_class_I_Rep_1 2 456.7842712402344 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 20.068 1 23.68 23.18 24.18 3.6118 0 0 0 0.40798 1 1952 1952 0 0 1 + 50741 17424 31736 31753 58427 58427 0.09593483888295395 VQVRINLA 8 Unmodified _VQVRINLA_ 0 0 0 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 MSMS UPN47_class_I_Rep_1 2 456.7847900390625 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 20.421 1 24.065 23.565 24.565 3.6436 0 0 0 0.40746 1 2048 2048 0.69038 0 1 + 50742 17424 31736 31753 58428 58428 0.09593483888295395 VQVRINLA 8 Unmodified _VQVRINLA_ 0 0 0 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 MULTI-MSMS UPN47_class_I_Rep_2 3 456.7840576171875 2 456.784902 911.55525 -0.48217 -0.00022025 -0.43361 -0.00019807 -0.91578 -0.00041832 456.7845203130661 16.674 0.77102 20.06 19.767 20.538 3.3864 141 89 2 0 0 0 0.82752 1 1050 1050 0 0 1 41770 + 50743 17424 31736 31753 58429 58429 0.09593483888295395 VQVRINLA 8 Unmodified _VQVRINLA_ 0 0 0 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 MSMS UPN47_class_I_Rep_2 3 456.7846374511719 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 20.529 1 23.936 23.436 24.436 3.4074 0 0 0 0.40746 1 2146 2146 0.69038 0 1 + 50744 17424 31736 31753 58430 58430 0.09593483888295395 VQVRINLA 8 Unmodified _VQVRINLA_ 0 0 0 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 REV__chr11:1761468-1771391|42|27.4|0.0|21.39|-|0|TE_info:L1MC2,L1MC2_dup4178,L1,LINE,donor,+,1771391,1771768|CTSD,None|1 MSMS UPN48_class_I_Rep_2 6 456.7840270996094 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 16.353 1 20.006 19.506 20.506 3.6527 0 0 0 0.40798 1 802 802 0 0 1 + 50745 17424 31736 31753 58431 58431 0.09593483888295395 VQVRPESY 8 Unmodified _VQVRPESY_ 0 0 0 L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|84|2|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|84|2|anti-sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|84|2|anti-sense MSMS UPN48_class_I_Rep_1 5 489.2564697265625 2 489.256174 976.497795 NaN NaN NaN NaN NaN NaN NaN 43.521 1 47.032 46.532 47.532 3.5103 0 0 0 0.40364 1 8179 8179 5.7604 0 1 50746 9981 31737 31754 58432 58432 0.008605968920846863 VQVRTLWG 8 Unmodified _VQVRTLWG_ 0 0 0 ENST00000493026.2_1_17:30804487-30806484:+|nuORF ENST00000493026.2_1_17:30804487-30806484:+|nuORF ENST00000493026.2_1_17:30804487-30806484:+|nuORF MSMS UPN46_class_I_Rep_3 1 479.7791748046875 2 479.777077 957.5396 NaN NaN NaN NaN NaN NaN NaN 80.285 1 80.285 79.785 80.785 0 0 0 0 0.40604 1 18906 18906 2.5775 0 1 50747 7078 31738 31755 58433 58433 0.059131973712851504 VQVSFIHFR 9 Unmodified _VQVSFIHFR_ 0 0 0 MER4E1_dup848|chr15:32557333-32558108:-|1.3524188318174972|0.0550173657953245|4.62|151.0|42|2|anti-sense MER4E1_dup848|chr15:32557333-32558108:-|1.3524188318174972|0.0550173657953245|4.62|151.0|42|2|anti-sense MER4E1_dup848|chr15:32557333-32558108:-|1.3524188318174972|0.0550173657953245|4.62|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 566.81591796875 2 566.816733 1131.61891 NaN NaN NaN NaN NaN NaN NaN 84.438 1 88.003 87.503 88.503 3.5655 0 0 0 0.39518 1 21125 21125 1.8442 0 1 50748 16048 31739 31756 58434 58434 0.05836844325403945 VQVSLSTSRI 10 Unmodified _VQVSLSTSRI_ 0 0 0 REV__Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|56|2|anti-sense REV__Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|56|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 545.3169555664062 2 545.316763 1088.61897 0.47423 0.0002586 0.10344 5.6407E-05 0.57767 0.00031501 545.3166379261304 81.993 2.4989 85.505 84.364 86.863 3.5122 464 274 3 0 0 0 0.56155 1 20732 20732 2.7352 0 1 499320 + 50749 32408 31740 31757 58435 58435 0.07820799534761136 VQVTAKGP 8 Unmodified _VQVTAKGP_ 0 0 0 REV__ENSG00000167699|ENST00000301329|GLOD4 REV__ENSG00000167699|ENST00000301329|GLOD4 MSMS UPN47_class_I_Rep_3 4 400.18109130859375 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 109.27 1 112.8 112.3 113.3 3.5347 0 0 0 0.40404 1 26839 26839 5.2307 0 1 + 50750 20231 31741 31758 58436 58436 0.052661306972822786 VQVTAKGP 8 Unmodified _VQVTAKGP_ 0 0 0 REV__ENSG00000167699|ENST00000301329|GLOD4 REV__ENSG00000167699|ENST00000301329|GLOD4 MSMS UPN48_class_I_Rep_1 5 400.237548828125 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 110.4 1 114.03 113.53 114.53 3.6326 0 0 0 0.39819 1 26802 26802 8.5933 2.8329 1 + 50751 20231 31741 31758 58437 58437 0.052661306972822786 VQYFSLVIQ 9 Unmodified _VQYFSLVIQ_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|77|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|77|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 548.7889404296875 2 548.8055 1095.59645 0.48344 0.00026531 -0.20567 -0.00011288 0.27776 0.00015244 548.8053959735721 77.563 0.58497 81.174 80.95 81.535 3.6116 73 54 2 0 0 0 0.33654 3 18430 18382;18390;18430 11.64 0 1 98651 + 50752 24869 31742 31759 58438;58439;58440 58440 0.052472001371370425 VQYFSLVIQ 9 Unmodified _VQYFSLVIQ_ 0 0 0 REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|77|2|sense REV__L1MA2_dup4178|chrX:78295122-78300633:-|1.694944564995671|0.0187999652038338|6.49|151.0|77|2|sense MSMS UPN48_class_I_Rep_3 7 548.78955078125 2 548.8055 1095.59645 NaN NaN NaN NaN NaN NaN NaN 78.266 1 81.888 81.388 82.388 3.6216 0 0 0 0.19137 1 18523 18523 16.942 0 1 + 50753 24869 31742 31759 58441 58441 0.052472001371370425 VQYHFWIF 8 Unmodified _VQYHFWIF_ 0 0 0 REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|97|2|anti-sense REV__L1MB7_dup3152|chr2:171098417-171100228:+|1.142323167314287|0.0235725835087317|5.6|150.0|97|2|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2896118164062 2 570.287277 1138.56 NaN NaN NaN NaN NaN NaN NaN 22.777 1 26.481 25.981 26.981 3.7042 0 0 0 0.40581 1 2704 2704 2.8892 0 1 + 50754 26249 31743 31760 58442 58442 -0.00373631968909649 VQYKILLD 8 Unmodified _VQYKILLD_ 0 0 0 REV__L1ME3Cz_dup34|chr1:8402555-8402898:-|1.3761816451370812|0.0870781850312519|3.98|151.0|24|2|anti-sense REV__L1ME3Cz_dup34|chr1:8402555-8402898:-|1.3761816451370812|0.0870781850312519|3.98|151.0|24|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955322265625 2 496.294768 990.574983 -0.098871 -4.9069E-05 1.6318 0.00080983 1.5329 0.00076076 496.2955071865018 23.452 0.056454 23.452 23.441 23.497 0 7 3 3 0 0 0 0.82752 1 2947 2947 0.79363 0 1 396800 + 50755 28116 31744 31761 58443 58443 0.07931815108440787 VQYLQFIVA 9 Unmodified _VQYLQFIVA_ 0 0 0 REV__L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|112|2|anti-sense REV__L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|112|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.8084106445312 2 540.808042 1079.60153 0.47608 0.00025747 -0.31586 -0.00017082 0.16023 8.6651E-05 540.807962599665 58.108 0.67587 61.399 61.137 61.813 3.2912 56 41 2 0 0 0 0.35081 1 13510 13510 10.824 0 1 61475 + 50756 28876 31745 31762 58444 58444 0.06491503999745873 VQYLQFIVA 9 Unmodified _VQYLQFIVA_ 0 0 0 REV__L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|112|2|anti-sense REV__L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|112|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 540.8086547851562 2 540.808042 1079.60153 0.32373 0.00017507 -0.31182 -0.00016863 0.011912 6.4419E-06 540.8080435513823 58.274 0.45684 61.44 61.136 61.593 3.1658 48 26 2 0 0 0 0.42249 1 13566 13566 6.7232 0 1 84088 + 50757 28876 31745 31762 58445 58445 0.06491503999745873 VRAAAAAAAAA 11 Unmodified _VRAAAAAAAAA_ 0 0 0 ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4 REV__ENSG00000125285|ENST00000376945|SOX21 REV__ENSG00000125285|ENST00000376945|SOX21 MULTI-MSMS UPN47_class_I_Rep_1 2 457.2641296386719 2 457.264333 912.514114 0.053608 2.4513E-05 -0.016221 -7.4172E-06 0.037387 1.7096E-05 457.26419233360826 70.67 0.72995 74.041 73.565 74.295 3.3713 96 69 2 0 0 0 0.68583 1 17190 17190 0 0 1 113470 50758 2793 31746 31763 58446 58446 0.05435722848824298 VRAAAAAAAAA 11 Unmodified _VRAAAAAAAAA_ 0 0 0 ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4 REV__ENSG00000125285|ENST00000376945|SOX21 REV__ENSG00000125285|ENST00000376945|SOX21 MULTI-MATCH UPN46_class_I_Rep_3 1 2 457.264333 912.514114 0.16917 7.7355E-05 0.5342 0.00024427 0.70337 0.00032162 457.26425495652285 73.809 0.1797 73.809 73.783 73.963 0 -0.13103 0.00045405 NaN 0 23 19 2 NaN NaN NaN NaN 0 NaN NaN 0 82368 50759 2793 31746 31763 0.05435722848824298 VRAAAAAAAAA 11 Unmodified _VRAAAAAAAAA_ 0 0 0 ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4 REV__ENSG00000125285|ENST00000376945|SOX21 REV__ENSG00000125285|ENST00000376945|SOX21 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 457.264333 912.514114 0.053608 2.4513E-05 -0.016221 -7.4172E-06 0.037387 1.7096E-05 457.26419233360826 70.67 0.72995 74.041 73.565 74.295 3.3713 0.10152 -4.9329E-05 NaN 0 96 69 2 NaN NaN NaN NaN 0 NaN NaN 0 113470 50760 2793 31746 31763 0.05435722848824298 VRAAAAAAAAA 11 Unmodified _VRAAAAAAAAA_ 0 0 0 ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4 REV__ENSG00000125285|ENST00000376945|SOX21 REV__ENSG00000125285|ENST00000376945|SOX21 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 457.264333 912.514114 0.078027 3.5679E-05 0.04583 2.0956E-05 0.12386 5.6635E-05 457.2641877668914 70.51 0.57028 73.969 73.595 74.165 3.4598 0.029503 7.4183E-06 NaN 0 81 49 2 NaN NaN NaN NaN 0 NaN NaN 0 132610 50761 2793 31746 31763 0.05435722848824298 VRAAARAP 8 Unmodified _VRAAARAP_ 0 0 0 ENST00000270357.9_2_2:241508179-241513275:+|nuORF ENST00000270357.9_2_2:241508179-241513275:+|nuORF ENST00000270357.9_2_2:241508179-241513275:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2484130859375 2 406.248486 810.48242 0.058498 2.3765E-05 -0.0022249 -9.0388E-07 0.056273 2.2861E-05 406.2484081733937 83.79 0.11772 83.79 83.756 83.874 0 26 10 3 0 0 0 0.82752 1 19926 19926 0.69038 0 1 398530 50762 6009 31747 31764 58447 58447 0.06959774885547176 VRAAQLHH 8 Unmodified _VRAAQLHH_ 0 0 0 nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES nc|ENSG00000182511|P07332-2|FES nc|ENSG00000182511|P07332-2|FES MSMS UPN46_class_I_Rep_3 1 466.6023254394531 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 44.824 1 44.824 44.324 45.324 0 0 0 0 0.40625 1 9063 9063 2.3027 0 1 50763 4957 31748 31765 58448 58448 0.046745622885509874 VRACRLRH 8 Unmodified _VRACRLRH_ 0 0 0 REV__ENST00000377780.8_1_13:73355758-73356004:-|nuORF REV__ENST00000377780.8_1_13:73355758-73356004:-|nuORF MSMS UPN48_class_I_Rep_2 6 505.7930603027344 2 505.793069 1009.57159 NaN NaN NaN NaN NaN NaN NaN 76.204 1 79.805 79.305 80.305 3.6011 0 0 0 0.40625 1 17988 17988 2.3027 0 1 + 50764 22025 31749 31766 58449 58449 0.06718286573436671 VRACRLRH 8 Unmodified _VRACRLRH_ 0 0 0 REV__ENST00000377780.8_1_13:73355758-73356004:-|nuORF REV__ENST00000377780.8_1_13:73355758-73356004:-|nuORF MSMS UPN48_class_I_Rep_3 7 505.7939147949219 2 505.793069 1009.57159 NaN NaN NaN NaN NaN NaN NaN 76.324 1 79.908 79.408 80.408 3.5831 0 0 0 0.4044 1 17973 17973 4.756 0 1 + 50765 22025 31749 31766 58450 58450 0.06718286573436671 VRAHLKNKQ 9 Unmodified _VRAHLKNKQ_ 0 0 0 AluJo_dup50834|chr12:68821859-68822150:-|1.4038335324570923|0.1756017878812443|3.0|151.0|16|3|sense AluJo_dup50834|chr12:68821859-68822150:-|1.4038335324570923|0.1756017878812443|3.0|151.0|16|3|sense AluJo_dup50834|chr12:68821859-68822150:-|1.4038335324570923|0.1756017878812443|3.0|151.0|16|3|sense MSMS UPN47_class_I_Rep_1 2 547.332275390625 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 85.421 1 89.013 88.513 89.513 3.5914 0 0 0 0.4007 1 21331 21331 0.52476 0 1 50766 114 31750 31767 58451 58451 0.10899051448268438 VRAIRKLL 8 Unmodified _VRAIRKLL_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 484.8399963378906 2 484.840011 967.665469 0.41878 0.00020304 -0.26032 -0.00012622 0.15845 7.6824E-05 484.83980040770786 108.29 0.56009 111.83 111.35 111.91 3.5333 138 60 4 0 0 0 0.82752 1 26272 26272 0.69038 0 1 33572000 + 50767 21606 31751 31768 58452 58452 0.1803432894735124 VRAIRKLL 8 Unmodified _VRAIRKLL_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 484.840011 967.665469 0.25601 0.00012413 -0.5836 -0.00028295 -0.32759 -0.00015883 484.83993347227806 108.02 0.040176 111.66 111.63 111.67 3.6355 -0.083112 -0.00039217 NaN 0.69038 8 2 4 NaN NaN NaN NaN 0 NaN NaN 0 1295300 + 50768 21606 31751 31768 0.1803432894735124 VRAIRKLL 8 Unmodified _VRAIRKLL_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 484.840011 967.665469 0.41878 0.00020304 -0.26032 -0.00012622 0.15845 7.6824E-05 484.83980040770786 108.29 0.56009 111.83 111.35 111.91 3.5333 0.087531 -7.869E-05 NaN 0.69038 138 60 4 NaN NaN NaN NaN 0 NaN NaN 0 33572000 + 50769 21606 31751 31768 0.1803432894735124 VRAIRKLL 8 Unmodified _VRAIRKLL_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 484.840011 967.665469 0.13317 6.4566E-05 -0.033951 -1.6461E-05 0.09922 4.8106E-05 484.83993594088105 108.15 0.20956 111.78 111.59 111.8 3.6313 0.035756 0.00014082 NaN 0.69038 56 20 4 NaN NaN NaN NaN 0 NaN NaN 0 11165000 + 50770 21606 31751 31768 0.1803432894735124 VRAIRKLL 8 Unmodified _VRAIRKLL_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 484.840011 967.665469 0.24786 0.00012017 -0.33805 -0.0001639 -0.090196 -4.3731E-05 484.839824416589 108.02 0.11688 111.69 111.59 111.71 3.6746 -0.046112 -0.00015406 NaN 0.69038 27 10 3 NaN NaN NaN NaN 0 NaN NaN 0 8089400 + 50771 21606 31751 31768 0.1803432894735124 VRAIRKLL 8 Unmodified _VRAIRKLL_ 0 0 0 REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF REV__ENST00000269445.10_1_18:46570279-46570333:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 484.840011 967.665469 0.23087 0.00011193 -0.21125 -0.00010242 0.019622 9.5133E-06 484.83987351255354 108.01 0.080879 111.69 111.67 111.75 3.6813 -0.048979 -3.11E-05 NaN 0.69038 15 7 4 NaN NaN NaN NaN 0 NaN NaN 0 5789900 + 50772 21606 31751 31768 0.1803432894735124 VRAKKKKKK 9 Unmodified _VRAKKKKKK_ 0 0 0 REV__L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense REV__L1PA7_dup9238|chr10:48372221-48377370:+|12.714882580508634|0.2795461482764699|5.51|151.0|67|2|sense MSMS UPN46_class_I_Rep_3 1 557.8167114257812 2 557.400767 1112.78698 NaN NaN NaN NaN NaN NaN NaN 37.942 1 37.942 37.442 38.442 0 0 0 0 0.4029 1 7181 7181 0 0 1 + 50773 30183 31752 31769 58453 58453 0.2350995130989304 VRAKKPAI 8 Unmodified _VRAKKPAI_ 0 0 0 REV__ENSG00000104979|ENST00000588234|C19orf53 REV__ENSG00000104979|ENST00000588234|C19orf53 MSMS UPN46_class_I_Rep_3 1 441.7878112792969 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 45.71 1 45.71 45.21 46.21 0 0 0 0 0.40738 1 9319 9319 0.79363 0 1 + 50774 18278 31753 31770 58454 58454 0.13554378130595524 VRAKLPVP 8 Unmodified _VRAKLPVP_ 0 0 0 REV__HERVIP10FH-int_dup374|chr20:47520090-47521294:-|5.5157884682274405|0.0638865408001212|6.43|151.0|39|3|sense REV__HERVIP10FH-int_dup374|chr20:47520090-47521294:-|5.5157884682274405|0.0638865408001212|6.43|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 440.2920837402344 2 440.292362 878.570172 NaN NaN NaN NaN NaN NaN NaN 56.569 1 59.87 59.37 60.37 3.3009 0 0 0 0.40746 1 12960 12960 0.69038 0 1 + 50775 23774 31754 31771 58455 58455 0.12602975756317392 VRAKQNIIY 9 Unmodified _VRAKQNIIY_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS UPN47_class_I_Rep_2 3 552.8297119140625 2 552.82984 1103.64513 0.18272 0.00010101 -0.47049 -0.0002601 -0.28777 -0.00015909 552.8296020798246 44.6 0.87377 47.955 47.628 48.501 3.3555 78 57 2 0 0 0 0.48643 1 9471 9471 2.0598 0.21551 1 87234 50776 5733 31755 31772 58456 58456 0.09745113496910562 VRAKRPPS 8 Unmodified _VRAKRPPS_ 0 0 0 REV__ENST00000475613.6_1_10:79580836-79628876:-|nuORF REV__ENST00000475613.6_1_10:79580836-79628876:-|nuORF MSMS UPN46_class_I_Rep_3 1 455.77398681640625 2 455.782693 909.550834 NaN NaN NaN NaN NaN NaN NaN 117.73 1 117.73 117.23 118.23 0 0 0 0 0.40643 1 29193 29193 2.0598 0 1 + 50777 19648 31756 31773 58457 58457 0.09244019465415931 VRALLRKL 8 Unmodified _VRALLRKL_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.84002685546875 2 484.840011 967.665469 0.13312 6.454E-05 -0.076125 -3.6908E-05 0.05699 2.7631E-05 484.8399520737323 108.26 0.31435 111.89 111.79 112.11 3.6313 42 23 4 0 0 0 0.82752 1 26172 26172 0.69038 0 1 15704000 50778 11619 31757 31774 58458 58458 0.1803432894735124 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 13.941 1 13.941 13.441 14.441 0 0 0 0 0.38417 1 509 509 0.094841 0 1 50779 11619 31758 31775 58459 58459 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.2976989746094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 19.014 1 19.014 18.514 19.514 0 0 0 0 0.38417 1 1748 1748 0.094841 0 1 50780 11619 31758 31775 58460 58460 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.399 1 24.399 23.899 24.899 0 0 0 0 0.38417 1 3202 3202 0.094841 0 1 50781 11619 31758 31775 58461 58461 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.537 1 24.537 24.037 25.037 0 0 0 0 0.38417 1 3240 3240 0.094841 0 1 50782 11619 31758 31775 58462 58462 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.2978820800781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.502 1 26.502 26.002 27.002 0 0 0 0 0.38417 1 3799 3799 0.094841 0 1 50783 11619 31758 31775 58463 58463 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 29.156 1 29.156 28.656 29.656 0 0 0 0 0.38417 1 4579 4579 0.094841 0 1 50784 11619 31758 31775 58464 58464 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 441.29742431640625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 44.906 1 48.606 48.106 49.106 3.6999 0 0 0 0.38417 1 9382 9382 0.094841 0 1 50785 11619 31758 31775 58465 58465 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 441.2980651855469 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 51.814 1 55.407 54.907 55.907 3.5932 0 0 0 0.38417 1 11482 11482 0.094841 0 1 50786 11619 31758 31775 58466 58466 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 441.2972106933594 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 45.326 1 48.679 48.179 49.179 3.3534 0 0 0 0.38417 1 9540 9540 0.094841 0 1 50787 11619 31758 31775 58467 58467 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 57.22 1 60.512 60.012 61.012 3.2912 0 0 0 0.38417 1 13159 13159 0.45452 0.35968 1 50788 11619 31758 31775 58468 58468 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 57.247 1 60.415 59.915 60.915 3.1681 0 0 0 0.38417 1 13215 13215 0.45452 0.35968 1 50789 11619 31758 31775 58469 58469 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.563 1 29.129 28.629 29.629 3.5667 0 0 0 0.38417 1 2997 2997 0.094841 0 1 50790 11619 31758 31775 58470 58470 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 30.311 1 33.853 33.353 34.353 3.542 0 0 0 0.38417 1 4332 4332 0.094841 0 1 50791 11619 31758 31775 58471 58471 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 33.138 1 36.658 36.158 37.158 3.5201 0 0 0 0.38417 1 5129 5129 0.094841 0 1 50792 11619 31758 31775 58472 58472 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_1 5 441.7698059082031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 77.594 1 81.116 80.616 81.616 3.5221 0 0 0 0.38417 1 18474 18474 0.094841 0 1 50793 11619 31758 31775 58473 58473 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 26.861 1 30.492 29.992 30.992 3.6311 0 0 0 0.38417 1 3479 3479 0.094841 0 1 50794 11619 31758 31775 58474 58474 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 441.29791259765625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 43.492 1 47.254 46.754 47.754 3.7617 0 0 0 0.38417 1 8179 8179 0.094841 0 1 50795 11619 31758 31775 58475 58475 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 441.2974853515625 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 25.499 1 29.268 28.768 29.768 3.769 0 0 0 0.38417 1 3109 3109 0.094841 0 1 50796 11619 31758 31775 58476 58476 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.749 1 32.491 31.991 32.991 3.7424 0 0 0 0.38417 1 3951 3951 0.094841 0 1 50797 11619 31758 31775 58477 58477 0.22417277055819795 VRALLRKLPQK 11 Unmodified _VRALLRKLPQK_ 0 0 0 L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense L1MC4a_dup8040|chr14:77565272-77565950:+|1.5721224950684485|0.0178906474981517|6.46|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 28.929 1 32.671 32.171 33.171 3.7424 0 0 0 0.38417 1 3999 3999 0.094841 0 1 50798 11619 31758 31775 58478 58478 0.22417277055819795 VRANVVPG 8 Unmodified _VRANVVPG_ 0 0 0 MLT1A_dup4141|chr7:101838835-101839235:-|2.336721018287987|0.0062289917697226|8.55|151.0|22|3|anti-sense MLT1A_dup4141|chr7:101838835-101839235:-|2.336721018287987|0.0062289917697226|8.55|151.0|22|3|anti-sense MLT1A_dup4141|chr7:101838835-101839235:-|2.336721018287987|0.0062289917697226|8.55|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.7922668457031 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 87.782 1 91.401 90.901 91.901 3.6187 0 0 0 0.40738 1 21042 21042 0.79363 0 1 50799 16237 31759 31776 58479 58479 0.05836952791423755 VRARAKAA 8 Unmodified _VRARAKAA_ 0 0 0 ENST00000538711.5_1_3:49507611-49514302:+|nuORF;ENST00000545947.5_1_3:49507611-49508472:+|nuORF;ENST00000308775.6_1_3:49507623-49547947:+|nuORF;ENST00000541308.5_1_3:49507611-49530351:+|nuORF ENST00000538711.5_1_3:49507611-49514302:+|nuORF ENST00000538711.5_1_3:49507611-49514302:+|nuORF MSMS UPN48_class_I_Rep_2 6 421.7689208984375 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 84.254 1 87.948 87.448 88.448 3.6937 0 0 0 0.40746 1 20051 20051 0.69038 0 1 50800 6101 31760 31777 58480 58480 0.09751750293924033 VRARKEVT 8 Unmodified _VRARKEVT_ 0 0 0 REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1 REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1 MSMS UPN48_class_I_Rep_1 5 479.7927551269531 2 479.793258 957.571963 NaN NaN NaN NaN NaN NaN NaN 83.344 1 86.931 86.431 87.431 3.5871 0 0 0 0.40472 1 19929 19929 4.3292 0 1 + 50801 17685 31761 31778 58481 58481 0.0914798477426757 VRARQAEA 8 Unmodified _VRARQAEA_ 0 0 0 REV__ENST00000475975.5_1_22:30767625-30771497:+|nuORF REV__ENST00000475975.5_1_22:30767625-30771497:+|nuORF MSMS UPN47_class_I_Rep_3 4 450.7537536621094 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 102.18 1 105.66 105.16 106.16 3.4873 0 0 0 0.40746 1 25131 25131 0.69038 0 1 + 50802 20947 31762 31779 58482 58482 0.03994552189033129 VRCESEVFH 9 Unmodified _VRCESEVFH_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS UPN47_class_I_Rep_1 2 553.2577514648438 2 553.258391 1104.50223 -0.017984 -9.9495E-06 0.031842 1.7617E-05 0.013858 7.667E-06 553.258468067107 35.236 0.91068 38.913 38.603 39.514 3.6762 148 63 3 0 0 0 0.47197 1 6582 6582 3.5965 0 1 248950 50803 1196 31763 31780 58483 58483 -0.045842619566428766 VRCFLGKLP 9 Unmodified _VRCFLGKLP_ 0 0 0 REV__ENST00000585118.5_2_17:43699359-43707302:+|nuORF REV__ENST00000585118.5_2_17:43699359-43707302:+|nuORF MSMS UPN48_class_I_Rep_1 5 516.8060302734375 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 103.19 1 106.81 106.31 107.31 3.6164 0 0 0 0.4007 1 24877 24877 0.52476 0 1 + 50804 23138 31764 31781 58484 58484 0.08047287567387684 VRCTDDPR 8 Unmodified _VRCTDDPR_ 0 0 0 AluSp_dup11734|chr4:39763252-39763549:-|1.146913072201844|0.0297111996088185|5.27|151.0|1|1|sense AluSp_dup11734|chr4:39763252-39763549:-|1.146913072201844|0.0297111996088185|5.27|151.0|1|1|sense AluSp_dup11734|chr4:39763252-39763549:-|1.146913072201844|0.0297111996088185|5.27|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 481.22857666015625 2 481.229633 960.444714 NaN NaN NaN NaN NaN NaN NaN 27.906 1 31.24 30.74 31.74 3.3337 0 0 0 0.40643 1 4304 4304 2.0598 1.2661 1 50805 225 31765 31782 58485 58485 -0.037091041622147713 VRDQQLVY 8 Unmodified _VRDQQLVY_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS UPN47_class_I_Rep_1 2 510.7771911621094 2 510.777274 1019.53999 -0.008913 -4.5525E-06 -0.016842 -8.6023E-06 -0.025755 -1.3155E-05 510.7771543234577 46.329 0.72511 50.029 49.719 50.444 3.6999 79 48 2 0 0 0 0.82752 1 9828 9828 15.847 0 1 149590 50806 4754 31766 31783 58486 58486 0.031005723004682295 VRDQQLVY 8 Unmodified _VRDQQLVY_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS UPN47_class_I_Rep_2 3 510.77667236328125 2 510.777274 1019.53999 -0.029507 -1.5072E-05 -0.077664 -3.9669E-05 -0.10717 -5.474E-05 510.7771267810229 46.683 0.72387 50.035 49.71 50.434 3.3515 91 53 3 0 0 0 0.82752 2 10011 9966;10011 15.847 0 1 155860 50807 4754 31766 31783 58487;58488 58488 0.031005723004682295 VRDQQLVY 8 Unmodified _VRDQQLVY_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS UPN47_class_I_Rep_3 4 510.77691650390625 2 510.777274 1019.53999 0.13846 7.072E-05 -0.082428 -4.2102E-05 0.056028 2.8618E-05 510.7771347038273 46.828 0.68089 50.071 49.715 50.396 3.2439 70 41 2 0 0 0 0.82752 1 10019 10019 15.847 0 1 174320 50808 4754 31766 31783 58489 58489 0.031005723004682295 VRDRTFIL 8 Unmodified _VRDRTFIL_ 0 0 0 REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 510.3033142089844 2 510.303458 1018.59236 0.28256 0.00014419 -0.019085 -9.7393E-06 0.26347 0.00013445 510.3033432812076 110.46 0.10749 114.13 114.11 114.22 3.67 17 11 2 0 0 0 0.82752 1 26212 26212 2.5775 0 1 350120 + 50809 18662 31767 31784 58490 58490 0.08381155434085485 VRDRTFIL 8 Unmodified _VRDRTFIL_ 0 0 0 REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 510.303458 1018.59236 0.22648 0.00011558 0.041046 2.0946E-05 0.26753 0.00013652 510.3034174401928 110.36 0.10912 113.99 113.95 114.06 3.6326 -0.067614 2.7155E-05 NaN 2.5775 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 962810 + 50810 18662 31767 31784 0.08381155434085485 VRDRTFIL 8 Unmodified _VRDRTFIL_ 0 0 0 REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron REV__ENSG00000118961.15,LDAH,chr2,-,I7.1,20687095,20701569|32|6.35|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 510.303458 1018.59236 0.28256 0.00014419 -0.019085 -9.7393E-06 0.26347 0.00013445 510.3033432812076 110.46 0.10749 114.13 114.11 114.22 3.67 0.067614 -3.4215E-05 NaN 2.5775 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 350120 + 50811 18662 31767 31784 0.08381155434085485 VRDTKTSHF 9 Unmodified _VRDTKTSHF_ 0 0 0 nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 MSMS UPN46_class_I_Rep_3 1 545.7860107421875 2 545.78563 1089.55671 NaN NaN NaN NaN NaN NaN NaN 32.173 1 32.173 31.673 32.673 0 0 0 0 0.17222 1 5471 5471 18.146 3.3081 1 50812 736 31768 31785 58491 58491 0.01551073186396934 VRDTKTSHF 9 Unmodified _VRDTKTSHF_ 0 0 0 nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 MSMS UPN46_class_I_Rep_3 1 545.7850952148438 2 545.78563 1089.55671 NaN NaN NaN NaN NaN NaN NaN 32.381 1 32.381 31.881 32.881 0 0 0 0 0.37891 1 5533 5533 5.7319 1.4026 1 50813 736 31768 31785 58492 58492 0.01551073186396934 VRDTKTSHF 9 Unmodified _VRDTKTSHF_ 0 0 0 nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-3|DNAJC11 MSMS UPN46_class_I_Rep_3 1 545.784423828125 2 545.78563 1089.55671 NaN NaN NaN NaN NaN NaN NaN 32.543 1 32.543 32.043 33.043 0 0 0 0 0.38784 1 5581 5581 3.5965 0 1 50814 736 31768 31785 58493 58493 0.01551073186396934 VRDWRPRKQRW 11 Unmodified _VRDWRPRKQRW_ 0 0 0 ENST00000526990.1_1_11:65350007-65350067:+|nuORF ENST00000526990.1_1_11:65350007-65350067:+|nuORF ENST00000526990.1_1_11:65350007-65350067:+|nuORF MSMS UPN48_class_I_Rep_3 7 528.2994384765625 3 528.299042 1581.8753 NaN NaN NaN NaN NaN NaN NaN 117.39 1 121 120.5 121.5 3.6124 0 0 0 0.38417 1 27928 27928 0 0 1 50815 7265 31769 31786 58494 58494 0.10763339882396394 VREDGAVA 8 Unmodified _VREDGAVA_ 0 0 0 REV__L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|108|3|anti-sense REV__L1MA6_dup665|chr2:165853422-165855339:-|2.943810379186328|0.1284545515466574|4.52|151.0|108|3|anti-sense MSMS UPN48_class_I_Rep_2 6 408.71343994140625 2 408.714142 815.413731 NaN NaN NaN NaN NaN NaN NaN 66.266 1 69.753 69.253 70.253 3.4866 0 0 0 0.4044 1 15127 15127 4.756 0 1 + 50816 25481 31770 31787 58495 58495 -0.001359342048090184 VREELRDYR 9 Unmodified _VREELRDYR_ 0 0 0 REV__L1PA4_dup4492|chr6:44900044-44906175:+|1.5536649467164132|0.0456383338746951|5.09|151.0|141|3|sense REV__L1PA4_dup4492|chr6:44900044-44906175:+|1.5536649467164132|0.0456383338746951|5.09|151.0|141|3|sense MSMS UPN47_class_I_Rep_1 2 618.3287353515625 2 618.328193 1234.64183 NaN NaN NaN NaN NaN NaN NaN 69.225 1 72.592 72.092 73.092 3.3678 0 0 0 0.3967 1 16760 16760 1.4819 0 1 + 50817 29637 31771 31788 58496 58496 0.03389818652203758 VREGSRLS 8 Unmodified _VREGSRLS_ 0 0 0 L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|137|2|anti-sense L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|137|2|anti-sense L1PA7_dup1120|chr2:58177809-58180717:+|3.86903351162319|0.4267229664557577|3.18|151.0|137|2|anti-sense MSMS UPN46_class_I_Rep_3 1 452.269287109375 2 452.253966 902.493378 NaN NaN NaN NaN NaN NaN NaN 42.084 1 42.084 41.584 42.584 0 0 0 0 0.4044 1 8303 8303 4.756 0 1 50818 14716 31772 31789 58497 58497 0.03823132469176471 VREKEVTLAC 10 Unmodified _VREKEVTLAC_ 0 0 0 REV__ENSG00000163820|ENST00000296137|FYCO1 REV__ENSG00000163820|ENST00000296137|FYCO1 MSMS UPN47_class_I_Rep_1 2 574.3106079101562 2 574.310623 1146.60669 NaN NaN NaN NaN NaN NaN NaN 15.978 1 19.474 18.974 19.974 3.4968 0 0 0 0.53105 1 947 947 0 0 1 + 50819 20009 31773 31790 58498 58498 0.039254398001048685 VREKPLPH 8 Unmodified _VREKPLPH_ 0 0 0 ENSG00000155592|ENST00000328086|ZKSCAN2;ENST00000569150.1_1_16:25251139-25264321:-|nuORF ENSG00000155592|ENST00000328086|ZKSCAN2 ENSG00000155592|ENST00000328086|ZKSCAN2 MULTI-MSMS UPN47_class_I_Rep_1 2 488.7926330566406 2 488.290351 974.566149 0.2632 0.00012852 0.36279 0.00017715 0.62599 0.00030567 488.29038920639283 108.73 0.3558 112.36 112.26 112.62 3.6355 45 32 2 0 0 0 0.82752 1 26716 26716 11.64 0 1 3781500 50820 3706 31774 31791 58499 58499 0.0778488626260696 VREKPLPH 8 Unmodified _VREKPLPH_ 0 0 0 ENSG00000155592|ENST00000328086|ZKSCAN2;ENST00000569150.1_1_16:25251139-25264321:-|nuORF ENSG00000155592|ENST00000328086|ZKSCAN2 ENSG00000155592|ENST00000328086|ZKSCAN2 MULTI-MSMS UPN47_class_I_Rep_2 3 488.2904052734375 2 488.290351 974.566149 0.45606 0.00022269 -0.065579 -3.2022E-05 0.39048 0.00019067 488.2902588126348 110.81 0.13859 114.34 114.29 114.43 3.5271 24 15 2 0 0 0 0.82752 1 26979 26979 2.0598 0 1 252960 50821 3706 31774 31791 58500 58500 0.0778488626260696 VREKPLPH 8 Unmodified _VREKPLPH_ 0 0 0 ENSG00000155592|ENST00000328086|ZKSCAN2;ENST00000569150.1_1_16:25251139-25264321:-|nuORF ENSG00000155592|ENST00000328086|ZKSCAN2 ENSG00000155592|ENST00000328086|ZKSCAN2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 488.290351 974.566149 0.2369 0.00011568 0.094179 4.5987E-05 0.33108 0.00016166 488.2903985012352 110.58 0.083282 114.24 114.23 114.31 3.6654 0.0013324 -2.4578E-05 NaN 2.0598 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 443400 50822 3706 31774 31791 0.0778488626260696 VRELARLY 8 Unmodified _VRELARLY_ 0 0 0 nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2 nc|ENSG00000090924|Q9H7P9-3|PLEKHG2 nc|ENSG00000090924|Q9H7P9-3|PLEKHG2 MSMS UPN48_class_I_Rep_2 6 510.3036193847656 2 510.303458 1018.59236 NaN NaN NaN NaN NaN NaN NaN 110.47 1 114.14 113.64 114.64 3.669 0 0 0 0.40746 1 26280 26280 0.69038 0 1 50823 1359 31775 31792 58501 58501 0.08381155434096854 VRELNIFY 8 Unmodified _VRELNIFY_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|80|3|sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|80|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2823486328125 2 527.290017 1052.56548 0.52876 0.00027881 -1.58 -0.0008331 -1.0512 -0.00055429 527.2898053201815 55.088 0.89364 58.644 58.216 59.11 3.5559 168 53 5 0 0 0 0.82752 1 11688 11688 6.3541 0 1 453650 + 50824 25458 31776 31793 58502 58502 0.04130046822888289 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 450.72027587890625 2 450.274701 898.534849 0.18572 8.3623E-05 0.11779 5.3038E-05 0.30351 0.00013666 450.2747890614738 90.137 0.16215 90.137 90.033 90.195 0 18 12 2 0 0 0 0.82752 2 21714 21714;21718 0 0 1 102960 50825 4547 31777 31794 58503;58504 58503 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 450.2745666503906 2 450.274701 898.534849 -0.043967 -1.9797E-05 0.1734 7.8076E-05 0.12943 5.8279E-05 450.2748662539831 86.092 0.14342 89.525 89.462 89.605 3.4329 27 18 2 0 0 0 0.82752 1 21414 21414 0 0 1 50954 50826 4547 31777 31794 58505 58505 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 450.2751159667969 2 450.274701 898.534849 -0.19947 -8.9815E-05 0.42869 0.00019303 0.22922 0.00010321 450.27472544311314 85.836 0.20039 89.208 89.146 89.347 3.3716 29 19 2 0 0 0 0.82752 1 21535 21535 0 0 1 1536500 50827 4547 31777 31794 58506 58506 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 449.7897644042969 2 450.274701 898.534849 -0.19997 -9.004E-05 0.5459 0.0002458 0.34593 0.00015576 450.2749612818954 86.073 0.17158 89.445 89.408 89.58 3.3716 26 19 2 0 0 0 0.72333 1 21601 21601 0 0 1 532710 50828 4547 31777 31794 58507 58507 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 450.274701 898.534849 0.18572 8.3623E-05 0.11779 5.3038E-05 0.30351 0.00013666 450.2747890614738 90.137 0.16215 90.137 90.033 90.195 0 -0.029069 -7.7807E-05 NaN 0 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 102960 50829 4547 31777 31794 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 450.274701 898.534849 -0.045216 -2.036E-05 -0.49342 -0.00022218 -0.53864 -0.00024253 450.2743661494387 86.013 0.048981 89.446 89.413 89.462 3.4329 0.081567 -0.00065394 NaN 0 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 64704 50830 4547 31777 31794 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MATCH UPN47_class_I_Rep_3 4 2 450.274701 898.534849 -0.19757 -8.896E-05 0.29239 0.00013165 0.094819 4.2695E-05 450.27483832880745 86.764 0.067596 90.144 90.119 90.186 3.3801 -0.022458 7.9427E-05 NaN 0 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 249960 50831 4547 31777 31794 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MATCH UPN48_class_I_Rep_2 6 2 450.274701 898.534849 0.14972 6.7415E-05 -0.56435 -0.00025411 -0.41464 -0.0001867 450.27477649911805 86.501 0.036034 90.218 90.199 90.235 3.7171 0.051527 -0.00069211 NaN 0 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 71607 50832 4547 31777 31794 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 450.274701 898.534849 0.14919 6.7177E-05 0.74629 0.00033604 0.89548 0.00040321 450.2752146116924 85.647 0.078148 89.353 89.291 89.369 3.7058 -0.011151 0.00046248 NaN 0 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 112490 50833 4547 31777 31794 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron;ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron ENSG00000171793.16,CTPS1,chr1,+,I11.1,40997527,40999829|30|7.53|1|intron MULTI-MATCH UPN48_class_I_Rep_3 7 2 450.274701 898.534849 0.18874 8.4987E-05 0.57206 0.00025759 0.76081 0.00034257 450.27503843341094 85.647 0.098907 89.417 89.373 89.472 3.7701 0.052496 0.00030558 NaN 0 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 179180 50834 4547 31777 31794 0.08152313228538333 VRERARARRP 10 Unmodified _VRERARARRP_ 0 0 0 ENST00000292363.9_1_19:651790-663233:-|nuORF ENST00000292363.9_1_19:651790-663233:-|nuORF ENST00000292363.9_1_19:651790-663233:-|nuORF MSMS UPN48_class_I_Rep_2 6 422.9267578125 3 422.925316 1265.75412 NaN NaN NaN NaN NaN NaN NaN 62.115 1 65.589 65.089 66.089 3.4738 0 0 0 0.53105 1 13854 13854 3.3196 1.4133 1 50835 6047 31778 31795 58508 58508 0.13187137239742697 VRERLHRR 8 Unmodified _VRERLHRR_ 0 0 0 REV__ENSG00000174799|ENST00000257287|CEP135 REV__ENSG00000174799|ENST00000257287|CEP135 MSMS UPN48_class_I_Rep_3 7 561.342041015625 2 561.341772 1120.66899 NaN NaN NaN NaN NaN NaN NaN 47.351 1 50.987 50.487 51.487 3.6363 0 0 0 0.40746 1 9283 9283 0.69038 0 1 + 50836 20535 31779 31796 58509 58509 0.11348391773935873 VRESTLVIK 9 Unmodified _VRESTLVIK_ 0 0 0 REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 522.8237915039062 2 522.824224 1043.63389 0.32455 0.00016969 -0.33242 -0.0001738 -0.0078651 -4.1121E-06 522.8239941296009 48.573 0.94592 52.203 51.894 52.84 3.6303 114 73 2 0 0 0 0.20317 1 9727 9727 20.415 4.2654 1 159860 + 50837 17304 31780 31797 58510 58510 0.1138229140274234 VRESTLVIK 9 Unmodified _VRESTLVIK_ 0 0 0 REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 522.824224 1043.63389 0.27413 0.00014332 -0.44824 -0.00023435 -0.17411 -9.1031E-05 522.8239112880029 48.801 0.61983 52.324 51.874 52.494 3.5239 0.12296 -3.936E-05 NaN 20.415 68 42 2 NaN NaN NaN NaN 0 NaN NaN 0 219980 + 50838 17304 31780 31797 0.1138229140274234 VRESTLVIK 9 Unmodified _VRESTLVIK_ 0 0 0 REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 522.824224 1043.63389 0.28714 0.00015012 -0.50615 -0.00026463 -0.21902 -0.00011451 522.823975857462 48.341 0.5685 52.077 51.839 52.408 3.7361 -0.12478 -9.9913E-05 NaN 20.415 56 41 2 NaN NaN NaN NaN 0 NaN NaN 0 174200 + 50839 17304 31780 31797 0.1138229140274234 VRESTLVIK 9 Unmodified _VRESTLVIK_ 0 0 0 REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense REV__Charlie1a_dup1546|chr4:87005279-87006043:-|1.6906594562955786|0.035730003980055|5.56|151.0|38|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 522.824224 1043.63389 0.32455 0.00016969 -0.33242 -0.0001738 -0.0078651 -4.1121E-06 522.8239941296009 48.573 0.94592 52.203 51.894 52.84 3.6303 0.001817 8.175E-05 NaN 20.415 114 73 2 NaN NaN NaN NaN 0 NaN NaN 0 159860 + 50840 17304 31780 31797 0.1138229140274234 VRFAYKKCI 9 Unmodified _VRFAYKKCI_ 0 0 0 REV__Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|47|2|sense REV__Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|47|2|sense MSMS UPN48_class_I_Rep_1 5 564.3241577148438 2 564.323337 1126.63212 NaN NaN NaN NaN NaN NaN NaN 44.962 1 48.477 47.977 48.977 3.5146 0 0 0 0.39518 1 8619 8619 1.8442 0 1 + 50841 32775 31781 31798 58511 58511 0.07386959113136982 VRFCIWVG 8 Unmodified _VRFCIWVG_ 0 0 0 REV__L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|221|2|anti-sense REV__L1MA1_dup3667|chr14:56161988-56166775:-|1.3598297911510646|0.048845524930491|4.8|151.0|221|2|anti-sense MSMS UPN48_class_I_Rep_1 5 490.2618103027344 2 490.262748 978.510943 NaN NaN NaN NaN NaN NaN NaN 29.44 1 32.99 32.49 33.49 3.5499 0 0 0 0.40738 1 4093 4093 0.79363 0 1 + 50842 24792 31782 31799 58512 58512 0.02082756470485947 VRFLGEVR 8 Unmodified _VRFLGEVR_ 0 0 0 REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19 REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19 MULTI-MSMS UPN48_class_I_Rep_1 5 488.29046630859375 2 488.290351 974.566149 0.14588 7.123E-05 0.31029 0.00015151 0.45617 0.00022274 488.2903725181493 110.51 0.09803 114.14 114.12 114.22 3.6326 16 8 4 0 0 0 0.82752 1 26825 26825 4.756 0 1 1661000 + 50843 21245 31783 31800 58513 58513 0.07784886262629698 VRFREKAHKR 10 Unmodified _VRFREKAHKR_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-SECPEP UPN46_class_I_Rep_3 1 442.5990295410156 3 442.9337 1325.77927 0.10297 4.5607E-05 0.70415 0.00031189 0.80711 0.0003575 442.9340252084459 51.957 0.18855 51.957 51.838 52.026 0 31 22 2 0 0 0 0.84575 1 11093 11093 0.13989 0 1 165250 50844 2616 31784 31801 58514 58514 0.12941192042285365 VRFSFTSH 8 Unmodified _VRFSFTSH_ 0 0 0 REV__L1MA7_dup7425|chr16:31195044-31195443:-|1.0762494540455585|0.1829036533943779|2.56|151.0|26|3|anti-sense REV__L1MA7_dup7425|chr16:31195044-31195443:-|1.0762494540455585|0.1829036533943779|2.56|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_2 3 490.7510681152344 2 490.751059 979.487565 NaN NaN NaN NaN NaN NaN NaN 26.891 1 30.39 29.89 30.89 3.4986 0 0 0 0.4044 1 3956 3956 4.756 0 1 + 50845 25523 31785 31802 58515 58515 -0.0029996604246207426 VRFSKTEN 8 Unmodified _VRFSKTEN_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN48_class_I_Rep_3 7 490.761474609375 2 490.761623 979.508694 NaN NaN NaN NaN NaN NaN NaN 27.937 1 31.682 31.182 32.182 3.7446 0 0 0 0.40625 1 3734 3734 2.3027 0 1 50846 3707 31786 31803 58516 58516 0.018119992663855555 VRFSKVKMK 9 Unmodified _VRFSKVKMK_ 0 0 0 L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|15|1|sense;L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|99|2|sense;L1PA14_dup2257|chr10:87270486-87274433:+|3.104067433307549|0.4191246711772775|2.89|151.0|51|2|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|15|1|sense L1PA11_dup767|chr3:111627141-111632895:+|45.15457870067456|0.4459888321565041|6.66|151.0|15|1|sense MSMS UPN48_class_I_Rep_1 5 561.8458251953125 2 561.844436 1121.67432 NaN NaN NaN NaN NaN NaN NaN 88.191 1 91.814 91.314 92.314 3.6229 0 0 0 0.4007 1 21154 21154 0.52476 0 1 50847 13693 31787 31804 58517 58517 0.11834934521539253 VRFYYFGY 8 Unmodified _VRFYYFGY_ 0 0 0 REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|113|1|anti-sense REV__L1PB2_dup510|chr3:105770874-105773489:+|1.5879604648658985|0.1386871364322513|3.52|151.0|113|1|anti-sense MSMS UPN48_class_I_Rep_3 7 557.7718505859375 2 557.77146 1113.52837 NaN NaN NaN NaN NaN NaN NaN 19.175 1 22.762 22.262 23.262 3.5874 0 0 0 0.40738 1 1400 1400 0.79363 0 1 + 50848 30531 31788 31805 58518 58518 -0.023856247228422944 VRGASVKR 8 Unmodified _VRGASVKR_ 0 0 0 ENST00000573951.1_1_16:3313772-3314576:+|nuORF ENST00000573951.1_1_16:3313772-3314576:+|nuORF ENST00000573951.1_1_16:3313772-3314576:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 437.3108215332031 2 436.774868 871.535184 -0.23505 -0.00010266 0.64505 0.00028174 0.41 0.00017908 436.77498921105536 85.403 0.077362 88.836 88.823 88.9 3.4329 13 9 2 0 0 0 0.72333 1 21249 21249 0.69038 0 1 279120 50849 7524 31789 31806 58519 58519 0.09427732948381617 VRGEIYLVR 9 Unmodified _VRGEIYLVR_ 0 0 0 REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 552.82958984375 2 552.82984 1103.64513 0.18272 0.00010101 -0.47049 -0.0002601 -0.28777 -0.00015909 552.8296020798246 44.6 0.87377 47.955 47.628 48.501 3.3555 78 57 2 0 0 0 0.30034 1 9336 9336 13.906 0 1 87234 + 50850 22146 31790 31807 58520 58520 0.09745113496887825 VRGGPHLF 8 Unmodified _VRGGPHLF_ 0 0 0 REV__ENST00000324331.10_1_6:5261416-5261566:+|nuORF REV__ENST00000324331.10_1_6:5261416-5261566:+|nuORF MSMS UPN47_class_I_Rep_1 2 441.75201416015625 2 441.750862 881.487171 NaN NaN NaN NaN NaN NaN NaN 68.712 1 72.077 71.577 72.577 3.3646 0 0 0 0.40738 1 16606 16606 0.79363 0 1 + 50851 21755 31791 31808 58521 58521 0.04168659028334787 VRGGPNLR 8 Unmodified _VRGGPNLR_ 0 0 0 REV__AluSx1_dup2690|chr1:35827238-35827539:+|1.3721271681126512|0.1019104288503268|3.75|151.0|12|3|sense REV__AluSx1_dup2690|chr1:35827238-35827539:+|1.3721271681126512|0.1019104288503268|3.75|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 434.7591247558594 2 434.759218 867.503883 0.096146 4.18E-05 -0.26027 -0.00011315 -0.16412 -7.1353E-05 434.75904878080854 78.268 0.69221 81.89 81.553 82.246 3.6222 189 80 3 0 0 0 0.82752 1 18595 18595 2.3027 0 1 592690 + 50852 17108 31792 31809 58522 58522 0.06483159914273529 VRGGSIRLL 9 Unmodified _VRGGSIRLL_ 0 0 0 Tigger3a_dup240|chr1:155678039-155678317:+|1.2939145085216694|0.0966174397492268|3.74|150.0|7|3|sense Tigger3a_dup240|chr1:155678039-155678317:+|1.2939145085216694|0.0966174397492268|3.74|150.0|7|3|sense Tigger3a_dup240|chr1:155678039-155678317:+|1.2939145085216694|0.0966174397492268|3.74|150.0|7|3|sense MSMS UPN47_class_I_Rep_3 4 485.8116760253906 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 65.022 1 68.202 67.702 68.702 3.1795 0 0 0 0.38916 1 15589 15589 3.2813 0 1 50853 33357 31793 31810 58523 58523 0.12232861670997863 VRGGVVNAAK 10 Unmodified _VRGGVVNAAK_ 0 0 0 ENST00000491827.1_1_3:142733158-142735829:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP ENST00000491827.1_1_3:142733158-142735829:+|nuORF ENST00000491827.1_1_3:142733158-142735829:+|nuORF MSMS UPN46_class_I_Rep_3 1 485.7925109863281 2 485.793258 969.571963 NaN NaN NaN NaN NaN NaN NaN 34.663 1 34.663 34.163 35.163 0 0 0 0 0.53105 1 6217 6217 1.4819 0.68827 1 50854 4033 31794 31811 58524 58524 0.08595984774274257 VRGKLQVSL 9 Unmodified _VRGKLQVSL_ 0 0 0 REV__Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|24|2|sense REV__Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.31854248046875 2 500.319109 998.623664 -0.25362 -0.00012689 0.12511 6.2594E-05 -0.12852 -6.4299E-05 500.3190770916615 39.398 0.94041 42.636 42.263 43.203 3.238 105 63 2 0 0 0 0.42249 1 7710 7710 6.7232 0 1 93347 + 50855 32571 31795 31812 58525 58525 0.12429728468180201 VRGKSVLF 8 Unmodified _VRGKSVLF_ 0 0 0 MER61-int_dup1043|chr17:29433845-29435848:-|2.913526147696803|0.0222327334898406|7.03|151.0|123|3|anti-sense MER61-int_dup1043|chr17:29433845-29435848:-|2.913526147696803|0.0222327334898406|7.03|151.0|123|3|anti-sense MER61-int_dup1043|chr17:29433845-29435848:-|2.913526147696803|0.0222327334898406|7.03|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_3 4 453.28204345703125 2 453.281995 904.549437 NaN NaN NaN NaN NaN NaN NaN 50.355 1 53.582 53.082 54.082 3.2262 0 0 0 0.40581 1 11117 11117 2.8892 0 1 50856 16155 31796 31813 58526 58526 0.09334385376655518 VRGQLKQA 8 Unmodified _VRGQLKQA_ 0 0 0 REV__nc|ENSG00000211945|A0A0C4DH31|IGHV1-18 REV__nc|ENSG00000211945|A0A0C4DH31|IGHV1-18 MULTI-MSMS UPN48_class_I_Rep_3 7 450.2744445800781 2 450.274701 898.534849 0.19138 8.6175E-05 -0.18329 -8.2532E-05 0.0080904 3.6429E-06 450.27455808323526 84.542 0.14157 88.291 88.226 88.367 3.7494 27 17 2 0 0 0 0.82752 1 20079 20079 0.69038 0 1 625930 + 50857 32104 31797 31814 58527 58527 0.08152313228504227 VRGQTPKVAK 10 Unmodified _VRGQTPKVAK_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MSMS UPN47_class_I_Rep_1 2 542.7755126953125 2 542.33529 1082.65603 NaN NaN NaN NaN NaN NaN NaN 41.174 1 44.846 44.346 45.346 3.6719 0 0 0 0.53105 1 8239 8239 1.1933 0.50296 1 50858 3553 31798 31815 58528 58528 0.1180051587118669 VRGRRLRGF 9 Unmodified _VRGRRLRGF_ 0 0 0 ENST00000322652.9_1_17:30264237-30264510:+|nuORF ENST00000322652.9_1_17:30264237-30264510:+|nuORF ENST00000322652.9_1_17:30264237-30264510:+|nuORF MSMS UPN47_class_I_Rep_1 2 559.305419921875 2 558.84669 1115.67883 NaN NaN NaN NaN NaN NaN NaN 24.843 1 28.592 28.092 29.092 3.7495 0 0 0 0.4029 1 3316 3316 0 0 1 50859 6157 31799 31816 58529 58529 0.12561579779298881 VRGRRWPQL 9 Unmodified _VRGRRWPQL_ 0 0 0 REV__ENST00000317040.11_1_19:17535475-17535995:+|nuORF REV__ENST00000317040.11_1_19:17535475-17535995:+|nuORF MSMS UPN46_class_I_Rep_3 1 584.3482666015625 2 584.346523 1166.67849 NaN NaN NaN NaN NaN NaN NaN 31.681 1 31.681 31.181 32.181 0 0 0 0 0.39518 1 5325 5325 1.8442 0.36234 1 + 50860 21717 31800 31817 58530 58530 0.10182160059457601 VRGVRHLF 8 Unmodified _VRGVRHLF_ 0 0 0 REV__ENSG00000123064|ENST00000306014|DDX54 REV__ENSG00000123064|ENST00000306014|DDX54 MSMS UPN48_class_I_Rep_3 7 492.29742431640625 2 492.29851 982.582468 NaN NaN NaN NaN NaN NaN NaN 56.698 1 60.241 59.741 60.741 3.5427 0 0 0 0.40404 1 12135 12135 5.2307 2.6532 1 + 50861 18770 31801 31818 58531 58531 0.09048012219363955 VRHAALPF 8 Unmodified _VRHAALPF_ 0 0 0 ENST00000329623.11_2_21:43339028-43346750:-|nuORF ENST00000329623.11_2_21:43339028-43346750:-|nuORF ENST00000329623.11_2_21:43339028-43346750:-|nuORF MSMS UPN47_class_I_Rep_3 4 455.7651062011719 2 455.766512 909.518471 NaN NaN NaN NaN NaN NaN NaN 21.24 1 24.589 24.089 25.089 3.3496 0 0 0 0.40738 1 2343 2343 0.79363 0 1 50862 6180 31802 31819 58532 58532 0.06009232062410774 VRHHKRLS 8 Unmodified _VRHHKRLS_ 0 0 0 REV__Tigger3b_dup2138|chr5:76478577-76478856:+|1.3417715285963885|0.0044126718003384|8.25|151.0|20|2|anti-sense REV__Tigger3b_dup2138|chr5:76478577-76478856:+|1.3417715285963885|0.0044126718003384|8.25|151.0|20|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 516.3096313476562 2 516.812316 1031.61008 -0.17447 -9.0167E-05 0.23919 0.00012362 0.064728 3.3452E-05 516.8134190132598 30.169 0.061794 33.914 33.895 33.956 3.7449 5 3 2 0 0 0 0.72333 1 4906 4906 0.69038 0 1 12584 + 50863 32733 31803 31820 58533 58533 0.09553915479591524 VRHKRPLVL 9 Unmodified _VRHKRPLVL_ 0 0 0 L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|19|3|sense L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|19|3|sense L1MB5_dup7824|chr16:74954427-74955107:+|1.0905794871436938|0.0653618528133773|4.06|150.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 559.36865234375 2 559.369467 1116.72438 NaN NaN NaN NaN NaN NaN NaN 98.11 1 101.59 101.09 102.09 3.4836 0 0 0 0.4007 1 24063 24063 0.52476 0 1 50864 10649 31804 31821 58534 58534 0.1706880524168355 VRHLFRVLLY 10 Unmodified _VRHLFRVLLY_ 0 0 0 MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.2708740234375 3 439.27143 1314.79246 0.00023625 1.0378E-07 -0.19797 -8.6962E-05 -0.19773 -8.6858E-05 439.2711802915437 37.662 0.28393 41.167 41.057 41.341 3.5052 56 27 3 0 0 0 0.56433 1 6411 6411 0.77653 0 1 167060 50865 15852 31805 31822 58535 58535 0.14765630101692295 VRHLFRVLLY 10 Unmodified _VRHLFRVLLY_ 0 0 0 MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 439.2713317871094 3 439.27143 1314.79246 -0.0039486 -1.7345E-06 -0.063103 -2.7719E-05 -0.067051 -2.9454E-05 439.2713397210006 38.514 0.84077 42.018 41.669 42.51 3.5048 103 69 2 0 0 0 0.56433 1 6621 6621 0.77653 0 1 193640 50866 15852 31805 31822 58536 58536 0.14765630101692295 VRHLFRVLLY 10 Unmodified _VRHLFRVLLY_ 0 0 0 MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 439.27099609375 3 439.27143 1314.79246 0.08531 3.7474E-05 -0.19224 -8.4447E-05 -0.10693 -4.6973E-05 439.27127376547236 37.157 0.3782 40.859 40.614 40.992 3.7022 70 40 3 0 0 0 0.56433 1 6327 6327 0.77653 0 1 118160 50867 15852 31805 31822 58537 58537 0.14765630101692295 VRHLFRVLLY 10 Unmodified _VRHLFRVLLY_ 0 0 0 MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 439.27143 1314.79246 0.14691 6.4533E-05 0.70184 0.0003083 0.84875 0.00037283 439.27178155091747 41.344 0.13754 41.344 41.252 41.39 0 0.15741 0.00114 NaN 0.77653 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 144330 50868 15852 31805 31822 0.14765630101692295 VRHLFRVLLY 10 Unmodified _VRHLFRVLLY_ 0 0 0 MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MER21A_dup1845|chr19:53557978-53558807:-|2.312511210335332|0.314960399115509|2.88|151.0|26|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 439.27143 1314.79246 -0.70422 -0.00030934 0.62249 0.00027344 -0.08173 -3.5902E-05 439.2716540126254 37.558 0.34748 40.957 40.688 41.035 3.3988 -0.22961 0.0010354 NaN 0.77653 38 24 2 NaN NaN NaN NaN 0 NaN NaN 0 45960 50869 15852 31805 31822 0.14765630101692295 VRHQVTRHIK 10 Unmodified _VRHQVTRHIK_ 0 0 0 REV__L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|72|3|sense REV__L1MC2_dup4046|chr10:92903638-92905466:-|1.3426813794708492|0.0551065930595749|4.61|148.0|72|3|sense MSMS UPN48_class_I_Rep_2 6 637.8749389648438 2 637.383637 1272.75272 NaN NaN NaN NaN NaN NaN NaN 102.8 1 106.51 106.01 107.01 3.7108 0 0 0 0.53105 1 24341 24341 1.1933 0 1 + 50870 26665 31806 31823 58538 58538 0.12725503150954864 VRHRLKKKRK 10 Unmodified _VRHRLKKKRK_ 0 0 0 AluSz_dup75559|chr14:77522154-77522462:-|1.9455569372780277|0.0685559822231468|4.83|151.0|10|3|sense AluSz_dup75559|chr14:77522154-77522462:-|1.9455569372780277|0.0685559822231468|4.83|151.0|10|3|sense AluSz_dup75559|chr14:77522154-77522462:-|1.9455569372780277|0.0685559822231468|4.83|151.0|10|3|sense MSMS UPN48_class_I_Rep_1 5 450.3078308105469 3 450.30899 1347.90514 NaN NaN NaN NaN NaN NaN NaN 44.307 1 47.82 47.32 48.32 3.5132 0 0 0 0.53105 1 8418 8418 0.15932 0 1 50871 364 31807 31824 58539 58539 0.24510323618369512 VRHRVKER 8 Unmodified _VRHRVKER_ 0 0 0 REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense REV__MER51C_dup31|chr3:129378704-129379336:-|1.0453714151344529|0.3925138972003819|1.41|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 540.3306274414062 2 540.330873 1078.64719 NaN NaN NaN NaN NaN NaN NaN 49.873 1 53.494 52.994 53.994 3.621 0 0 0 0.40643 1 10058 10058 2.0598 0 1 + 50872 31398 31808 31825 58540 58540 0.1110158702535955 VRHVFLHI 8 Unmodified _VRHVFLHI_ 0 0 0 REV__nc|ENSG00000111445|P40937-2|RFC5 REV__nc|ENSG00000111445|P40937-2|RFC5 MSMS UPN48_class_I_Rep_2 6 510.7603454589844 2 510.808711 1019.60287 NaN NaN NaN NaN NaN NaN NaN 64.005 1 67.479 66.979 67.979 3.4743 0 0 0 0.40738 1 14434 14434 0.79363 0 1 + 50873 18455 31809 31826 58541 58541 0.09385182879179865 VRHVLPVPY 9 Unmodified _VRHVLPVPY_ 0 0 0 REV__nc|ENSG00000130294|Q12756|KIF1A REV__nc|ENSG00000130294|Q12756|KIF1A MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 45.007 1 45.007 44.507 45.507 0 0 0 0 0.40038 1 9111 9111 0.6015 0.076735 1 + 50874 18935 31810 31827 58542 58542 0.09258032330808419 VRHYPRGKRV 10 Unmodified _VRHYPRGKRV_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MSMS UPN47_class_I_Rep_3 4 634.378173828125 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.9 1 110.44 109.94 110.94 3.5369 0 0 0 0.53105 1 26108 26108 3.2813 0 1 50875 883 31811 31828 58543 58543 0.11945520496556128 VRHYPRGKRV 10 Unmodified _VRHYPRGKRV_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MSMS UPN47_class_I_Rep_3 4 634.37841796875 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 107.12 1 110.66 110.16 111.16 3.5382 0 0 0 0.53105 1 26153 26153 3.5965 0 1 50876 883 31811 31828 58544 58544 0.11945520496556128 VRICSKLKAV 10 Unmodified _VRICSKLKAV_ 0 0 0 nc|ENSG00000239388|A6NK59-2|ASB14;nc|ENSG00000239388|A6NK59|ASB14;ENSG00000239388|ENST00000487349|ASB14 nc|ENSG00000239388|A6NK59-2|ASB14 nc|ENSG00000239388|A6NK59-2|ASB14 MSMS UPN48_class_I_Rep_3 7 558.8486938476562 2 558.849719 1115.68488 NaN NaN NaN NaN NaN NaN NaN 35.678 1 39.345 38.845 39.845 3.6667 0 0 0 0.53105 1 5816 5816 1.4819 0 1 50877 5698 31812 31829 58545 58545 0.1316691717595404 VRIEGTVEL 9 Unmodified _VRIEGTVEL_ 0 0 0 REV__ENSG00000113369|ENST00000265138|ARRDC3 REV__ENSG00000113369|ENST00000265138|ARRDC3 MULTI-MSMS UPN47_class_I_Rep_1 2 508.302001953125 2 508.292756 1014.57096 0.12776 6.4941E-05 -0.29218 -0.00014851 -0.16442 -8.3574E-05 508.29250007860776 51.729 0.61109 55.323 55.028 55.639 3.5932 54 34 2 0 0 0 0.26468 1 11510 11510 16.149 0.90062 1 106200 + 50878 18506 31813 31830 58546 58546 0.06425725614735711 VRIESLLLG 9 Unmodified _VRIESLLLG_ 0 0 0 REV__MER44C_dup833|chr20:45059011-45059702:-|1.4319064535906172|0.0096301984551776|7.22|150.0|42|3|anti-sense REV__MER44C_dup833|chr20:45059011-45059702:-|1.4319064535906172|0.0096301984551776|7.22|150.0|42|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 500.312744140625 2 500.313492 998.612431 -0.63539 -0.00031789 0.34287 0.00017154 -0.29252 -0.00014635 500.3133962298177 14.164 0.30319 17.533 17.453 17.756 3.3697 60 35 2 0 0 0 0.50582 1 532 532 0 0 1 56251 + 50879 31326 31814 31831 58547 58547 0.11306906374068149 VRIHKPPPLT 10 Unmodified _VRIHKPPPLT_ 0 0 0 nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 MULTI-MSMS UPN46_class_I_Rep_3 1 579.863037109375 2 579.361308 1156.70806 0.50784 0.00029422 0.90606 0.00052493 1.4139 0.00081916 579.3619519537576 109.75 0.2527 109.75 109.63 109.88 0 41 21 3 0 0 0 0.54466 1 27023 27023 6.2058 3.2105 1 4064800 50880 1377 31815 31832 58548 58548 0.13597679284907827 VRIHKPPPLT 10 Unmodified _VRIHKPPPLT_ 0 0 0 nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 MSMS UPN46_class_I_Rep_3 1 579.3624877929688 2 579.361308 1156.70806 NaN NaN NaN NaN NaN NaN NaN 109.32 1 109.32 108.82 109.82 0 0 0 0 0.53105 1 26832 26832 13.042 3.6593 1 50881 1377 31815 31832 58549 58549 0.13597679284907827 VRIHKPPPLT 10 Unmodified _VRIHKPPPLT_ 0 0 0 nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 MULTI-MSMS UPN47_class_I_Rep_1 2 579.3615112304688 2 579.361308 1156.70806 0.49185 0.00028496 -0.061493 -3.5627E-05 0.43035 0.00024933 579.3611504531688 108.93 0.14163 112.54 112.45 112.59 3.6046 22 13 2 0 0 0 0.54466 1 26807 26807 6.2058 0 1 32533000 50882 1377 31815 31832 58550 58550 0.13597679284907827 VRIHKPPPLT 10 Unmodified _VRIHKPPPLT_ 0 0 0 nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 nc|ENSG00000091592|Q9C000-5|NLRP1 MULTI-MSMS UPN48_class_I_Rep_3 7 579.3621826171875 2 579.361308 1156.70806 0.4854 0.00028122 0.3998 0.00023163 0.8852 0.00051285 579.3614379114558 108.66 0.40789 112.34 112.24 112.65 3.6751 104 45 3 0 0 0 0.54466 1 25709 25709 6.2058 0.9089 1 48441000 50883 1377 31815 31832 58551 58551 0.13597679284907827 VRIIKMWHR 9 Unmodified _VRIIKMWHR_ 0 0 0 Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|105|1|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8696899414062 2 619.868777 1237.723 NaN NaN NaN NaN NaN NaN NaN 88.239 1 91.967 91.467 92.467 3.7279 0 0 0 0.4007 1 21008 21008 0.52476 0.066424 1 50884 33198 31816 31833 58552 58552 0.11364847881282003 VRIKIKIRT 9 Unmodified _VRIKIKIRT_ 0 0 0 MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|228|3|anti-sense MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|228|3|anti-sense MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|228|3|anti-sense MSMS UPN48_class_I_Rep_1 5 563.8922119140625 2 563.892775 1125.771 NaN NaN NaN NaN NaN NaN NaN 25.793 1 29.36 28.86 29.86 3.5667 0 0 0 0.4029 1 3060 3060 0 0 1 50885 16162 31817 31834 58553 58553 0.21314245072949234 VRIKKKKVKK 10 Unmodified _VRIKKKKVKK_ 0 0 0 L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|6|1|sense L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|6|1|sense L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 627.9588012695312 2 627.958449 1253.90235 NaN NaN NaN NaN NaN NaN NaN 33.224 1 36.744 36.244 37.244 3.5201 0 0 0 0.53105 1 5154 5154 0 0 1 50886 12872 31818 31835 58554 58554 0.2855505544087009 VRIKLHNL 8 Unmodified _VRIKLHNL_ 0 0 0 REV__ENST00000415986.5_1_X:101908692-101908755:+|nuORF REV__ENST00000415986.5_1_X:101908692-101908755:+|nuORF MSMS UPN48_class_I_Rep_1 5 496.7680969238281 2 496.821818 991.629084 NaN NaN NaN NaN NaN NaN NaN 70.289 1 73.749 73.249 74.249 3.4598 0 0 0 0.40746 1 16369 16369 0.69038 0 1 + 50887 22218 31819 31836 58555 58555 0.1329345205062964 VRILRICGKMK 11 Unmodified _VRILRICGKMK_ 0 0 0 REV__HERVH-int_dup3618|chrX:71270272-71271283:+|1.5136941591205553|0.2111858752637041|2.84|151.0|56|3|anti-sense REV__HERVH-int_dup3618|chrX:71270272-71271283:+|1.5136941591205553|0.2111858752637041|2.84|151.0|56|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 439.27142333984375 3 439.605427 1315.79445 0.051052 2.2443E-05 0.59031 0.0002595 0.64136 0.00028194 439.60579453929313 35.65 0.28096 39.317 39.126 39.407 3.6668 35 25 2 0 0 0 22.551 1 5794 5794 0.45452 0.45452 1 86244 + 50888 23670 31820 31837 58556 58556 0.1491859952361665 VRIPVEGEVP 10 Unmodified _VRIPVEGEVP_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MSMS UPN48_class_I_Rep_1 5 547.7073364257812 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 117.53 1 121.15 120.65 121.65 3.6215 0 0 0 0.53105 1 28640 28640 0.40072 0 1 50889 4390 31821 31838 58557 58557 0.07009701023071102 VRIQSVCM 8 Unmodified _VRIQSVCM_ 0 0 0 REV__L1M4b_dup4117|chr19:20802452-20803604:-|1.8209579704062933|0.1067415405567115|4.09|150.0|26|2|sense REV__L1M4b_dup4117|chr19:20802452-20803604:-|1.8209579704062933|0.1067415405567115|4.09|150.0|26|2|sense MSMS UPN46_class_I_Rep_3 1 468.2446594238281 2 468.243698 934.472843 NaN NaN NaN NaN NaN NaN NaN 89.413 1 89.413 88.913 89.913 0 0 0 0 0.40738 1 21509 21509 0.79363 0 1 + 50890 24557 31822 31839 58558 58558 0.002985024935128422 VRIQYTIH 8 Unmodified _VRIQYTIH_ 0 0 0 Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|15|1|sense;Tigger2a_dup2782|chr15:68098091-68098522:-|1.034921813178958|0.0204251005556245|5.66|150.0|13|3|sense Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|15|1|sense Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|15|1|sense MSMS UPN48_class_I_Rep_3 7 515.2960815429688 2 515.295633 1028.57671 NaN NaN NaN NaN NaN NaN NaN 33.234 1 36.923 36.423 37.423 3.6896 0 0 0 0.40746 1 5141 5141 0.69038 0 1 50891 33303 31823 31840 58559 58559 0.06356868917032443 VRIRELLPLVL 11 Unmodified _VRIRELLPLVL_ 0 0 0 nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1 nc|ENSG00000122870|Q9H694-2|BICC1 nc|ENSG00000122870|Q9H694-2|BICC1 MULTI-SECPEP UPN48_class_I_Rep_3 7 440.2921447753906 3 440.962374 1319.86529 0.080542 3.5516E-05 -0.44296 -0.00019533 -0.36241 -0.00015981 441.2973779324057 57.834 0.70324 61.365 61.041 61.744 3.5317 70 47 2 0 0 0 22.551 1 12414 12414 0.50596 0.051438 1 247070 50892 2398 31824 31841 58560 58560 0.21815339104455234 VRIRKPLIG 9 Unmodified _VRIRKPLIG_ 0 0 0 L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense MSMS UPN47_class_I_Rep_3 4 526.7660522460938 2 526.358568 1050.70258 NaN NaN NaN NaN NaN NaN NaN 33.918 1 37.193 36.693 37.693 3.2748 0 0 0 0.4007 1 6106 6106 0.52476 0 1 50893 13905 31825 31842 58561 58561 0.1792600049311659 VRIRKPLIG 9 Unmodified _VRIRKPLIG_ 0 0 0 L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense MSMS UPN48_class_I_Rep_1 5 526.360107421875 2 526.358568 1050.70258 NaN NaN NaN NaN NaN NaN NaN 33.458 1 36.978 36.478 37.478 3.5201 0 0 0 0.4007 1 5222 5222 0.52476 0 1 50894 13905 31825 31842 58562 58562 0.1792600049311659 VRIRKPLIG 9 Unmodified _VRIRKPLIG_ 0 0 0 L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense L1PA15_dup2589|chr5:82000957-82002816:+|1.3553683089137378|0.0300787884255978|5.49|151.0|18|1|sense MSMS UPN48_class_I_Rep_2 6 526.3607177734375 2 526.358568 1050.70258 NaN NaN NaN NaN NaN NaN NaN 35.092 1 38.765 38.265 39.265 3.6735 0 0 0 0.4007 1 5739 5739 0.52476 0 1 50895 13905 31825 31842 58563 58563 0.1792600049311659 VRISKSRE 8 Unmodified _VRISKSRE_ 0 0 0 REV__L1MEg_dup9285|chr10:48355528-48356267:+|1.7277217094818464|0.1688462416257028|3.36|151.0|19|2|sense REV__L1MEg_dup9285|chr10:48355528-48356267:+|1.7277217094818464|0.1688462416257028|3.36|151.0|19|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 487.7906188964844 2 487.790715 973.566878 0.26574 0.00012963 -0.0056855 -2.7733E-06 0.26005 0.00012685 487.7906228399305 78.318 0.29237 78.318 78.137 78.429 0 74 35 3 0 0 0 0.82752 1 18349 18349 1.8442 0 1 273290 + 50896 28787 31826 31843 58564 58564 0.07903680911658739 VRIVTMDAEM 10 Unmodified _VRIVTMDAEM_ 0 0 0 nc|ENSG00000186575|P35240-9|NF2;nc|ENSG00000186575|P35240-10|NF2;nc|ENSG00000186575|P35240-7|NF2;nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575.19,NF2,chr22,+,I17.1,29681602,29683019|63|5.4|3|intron;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2 nc|ENSG00000186575|P35240-9|NF2 nc|ENSG00000186575|P35240-9|NF2 MULTI-MSMS UPN47_class_I_Rep_2 3 582.7911987304688 2 582.791209 1163.56787 0.17589 0.00010251 -0.039268 -2.2885E-05 0.13662 7.9623E-05 582.7911883733705 44.388 0.69897 47.744 47.406 48.105 3.3556 63 48 2 0 0 0 0.54822 1 9213 9213 5.7319 0 1 146240 50897 5159 31827 31844 58565 58565 -0.007376088259661628 VRKACHKLRG 10 Unmodified _VRKACHKLRG_ 0 0 0 Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|5|1|sense Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|5|1|sense Tigger1_dup6363|chr8:73506339-73508693:-|1.9589404380752955|0.2348535980234676|3.06|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3482666015625 2 584.348209 1166.68186 0.28054 0.00016393 -0.26425 -0.00015441 0.016296 9.5226E-06 584.3479872092612 30.729 0.11394 30.729 30.653 30.767 0 11 7 2 0 0 0 0.56543 1 5032 5032 0 0 1 233470 50898 33157 31828 31845 58566 58566 0.10519086841782155 VRKDKTFS 8 Unmodified _VRKDKTFS_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS UPN48_class_I_Rep_1 5 490.78253173828125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 114.65 1 118.28 117.78 118.78 3.6301 0 0 0 0.40625 1 27872 27872 2.3027 0 1 50899 16777 31829 31846 58567 58567 0.05448876163097793 VRKERKRGV 9 Unmodified _VRKERKRGV_ 0 0 0 REV__L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|17|1|sense REV__L1MC4_dup24031|chr20:47586229-47587459:-|2.017316179785656|0.0239324140511739|6.4|151.0|17|1|sense MSMS UPN48_class_I_Rep_3 7 564.3591918945312 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 79.01 1 82.652 82.152 83.152 3.6423 0 0 0 0.4007 1 18721 18721 0.52476 0 1 + 50900 26890 31830 31847 58568 58568 0.14642429230934795 VRKFIQRN 8 Unmodified _VRKFIQRN_ 0 0 0 L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|16|1|sense L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|16|1|sense L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.821044921875 2 530.82235 1059.63015 0.24635 0.00013077 -1.4803 -0.00078579 -1.234 -0.00065502 530.8214017141856 73.726 0.46019 77.031 76.665 77.125 3.3048 63 40 2 0 0 0 0.82752 2 18073 18073;18112 2.3027 0.24298 1 107040 50901 9354 31831 31848 58569;58570 58569 0.10271666419566827 VRKHLLKG 8 Unmodified _VRKHLLKG_ 0 0 0 REV__nc|ENSG00000292339|O95671-2|ASMTL REV__nc|ENSG00000292339|O95671-2|ASMTL MSMS UPN48_class_I_Rep_1 5 475.85833740234375 2 475.816536 949.618519 NaN NaN NaN NaN NaN NaN NaN 35.49 1 39 38.5 39.5 3.5101 0 0 0 0.40798 1 5811 5811 0 0 1 + 50902 32136 31832 31849 58571 58571 0.1416946939624495 VRKHTLRI 8 Unmodified _VRKHTLRI_ 0 0 0 L1MD_dup2654|chr5:76916180-76916835:+|5.20073467839256|0.0235152041412547|7.79|149.0|40|2|anti-sense L1MD_dup2654|chr5:76916180-76916835:+|5.20073467839256|0.0235152041412547|7.79|149.0|40|2|anti-sense L1MD_dup2654|chr5:76916180-76916835:+|5.20073467839256|0.0235152041412547|7.79|149.0|40|2|anti-sense MSMS UPN48_class_I_Rep_1 5 511.8325500488281 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 38.396 1 41.901 41.401 42.401 3.5052 0 0 0 0.40746 1 6647 6647 0.69038 0 1 50903 11874 31833 31850 58572 58572 0.14092256799222014 VRKISLLF 8 Unmodified _VRKISLLF_ 0 0 0 L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|68|2|anti-sense L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|68|2|anti-sense L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|68|2|anti-sense MSMS UPN46_class_I_Rep_3 1 488.32159423828125 2 488.32112 974.627687 NaN NaN NaN NaN NaN NaN NaN 83.401 1 83.401 82.901 83.901 0 0 0 0 0.40798 1 19809 19809 0 0 1 50904 8666 31834 31851 58573 58573 0.13935817961919383 VRKKITHNKG 10 Unmodified _VRKKITHNKG_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|34|2|sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|34|2|sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|34|2|sense MSMS UPN48_class_I_Rep_2 6 590.8677368164062 2 590.867289 1179.72002 NaN NaN NaN NaN NaN NaN NaN 96.279 1 100.06 99.56 100.56 3.7804 0 0 0 0.53105 1 22868 22868 1.6526 0 1 50905 12635 31835 31852 58574 58574 0.13735296028107769 VRKKKKKA 8 Unmodified _VRKKKKKA_ 0 0 0 L1MD2_dup7865|chr12:9670482-9671225:-|3.098986720820077|0.2374068173769186|3.71|151.0|45|2|anti-sense L1MD2_dup7865|chr12:9670482-9671225:-|3.098986720820077|0.2374068173769186|3.71|151.0|45|2|anti-sense L1MD2_dup7865|chr12:9670482-9671225:-|3.098986720820077|0.2374068173769186|3.71|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.3533630371094 2 493.353286 984.692019 0.16444 8.1126E-05 0.41477 0.00020463 0.5792 0.00028575 493.3534202804287 108.41 0.23286 112.04 111.91 112.14 3.6313 42 19 4 0 0 0 0.82752 1 26224 26224 0.69038 0 1 7111100 50906 12034 31836 31853 58575 58575 0.1990601783869579 VRKKKKKA 8 Unmodified _VRKKKKKA_ 0 0 0 L1MD2_dup7865|chr12:9670482-9671225:-|3.098986720820077|0.2374068173769186|3.71|151.0|45|2|anti-sense L1MD2_dup7865|chr12:9670482-9671225:-|3.098986720820077|0.2374068173769186|3.71|151.0|45|2|anti-sense L1MD2_dup7865|chr12:9670482-9671225:-|3.098986720820077|0.2374068173769186|3.71|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.35345458984375 2 493.353286 984.692019 0.24661 0.00012167 0.31645 0.00015612 0.56306 0.00027779 493.3533525041169 108.23 0.3933 111.92 111.67 112.06 3.6813 93 41 3 0 0 0 0.82752 1 25597 25597 0.69038 0 1 52624000 50907 12034 31836 31853 58576 58576 0.1990601783869579 VRKKKKKKK 9 Unmodified _VRKKKKKKK_ 0 0 0 L1MEc_dup18265|chr22:40074968-40076134:-|3.4911001896262945|0.0116015503262547|8.23|151.0|42|3|sense REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 585.7780151367188 2 585.929692 1169.84483 NaN NaN NaN NaN NaN NaN NaN 29.245 1 32.569 32.069 33.069 3.3235 0 0 0 0.4029 1 4700 4700 0 0 1 50908 31654 31837 31854 58577 58577 0.26670213235297524 VRKKKKKKK 9 Unmodified _VRKKKKKKK_ 0 0 0 L1MEc_dup18265|chr22:40074968-40076134:-|3.4911001896262945|0.0116015503262547|8.23|151.0|42|3|sense REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 586.2616577148438 2 585.929692 1169.84483 NaN NaN NaN NaN NaN NaN NaN 29.32 1 32.644 32.144 33.144 3.3235 0 0 0 0.4029 1 4723 4723 0 0 1 50909 31654 31837 31854 58578 58578 0.26670213235297524 VRKKKKKKK 9 Unmodified _VRKKKKKKK_ 0 0 0 L1MEc_dup18265|chr22:40074968-40076134:-|3.4911001896262945|0.0116015503262547|8.23|151.0|42|3|sense REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense REV__MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|33|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.2628784179688 2 585.929692 1169.84483 NaN NaN NaN NaN NaN NaN NaN 29.327 1 32.959 32.459 33.459 3.6316 0 0 0 0.4029 1 4152 4152 0 0 1 50910 31654 31837 31854 58579 58579 0.26670213235297524 VRKKKLRKLKR 11 Unmodified _VRKKKLRKLKR_ 0 0 0 REV__ENST00000398637.9_1_12:46581311-46581524:-|nuORF REV__ENST00000398637.9_1_12:46581311-46581524:-|nuORF MSMS UPN48_class_I_Rep_2 6 484.775634765625 3 485.015695 1452.02525 NaN NaN NaN NaN NaN NaN NaN 24.775 1 28.411 27.911 28.911 3.6363 0 0 0 0.38417 1 2923 2923 0 0 1 + 50911 22142 31838 31855 58580 58580 0.31732311892142206 VRKKKSQI 8 Unmodified _VRKKKSQI_ 0 0 0 L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|27|2|sense L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|27|2|sense L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 493.8279724121094 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 72.068 1 75.595 75.095 76.095 3.5266 0 0 0 0.40659 1 16776 16776 1.8442 0 1 50912 13381 31839 31856 58581 58581 0.14625434705089901 VRKKNHKN 8 Unmodified _VRKKNHKN_ 0 0 0 REV__L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|101|2|sense REV__L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|101|2|sense MSMS UPN48_class_I_Rep_3 7 512.3133544921875 2 512.312149 1022.60975 NaN NaN NaN NaN NaN NaN NaN 46.731 1 50.367 49.867 50.867 3.6363 0 0 0 0.40625 1 9096 9096 2.3027 0.82083 1 + 50913 30082 31840 31857 58582 58582 0.09934495759750916 VRKLGVPLL 9 Unmodified _VRKLGVPLL_ 0 0 0 ENSG00000176715|ENST00000614302|ACSF3 ENSG00000176715|ENST00000614302|ACSF3 ENSG00000176715|ENST00000614302|ACSF3 MSMS UPN48_class_I_Rep_2 6 497.72784423828125 2 497.84222 993.669886 NaN NaN NaN NaN NaN NaN NaN 21.943 1 25.589 25.089 26.089 3.6459 0 0 0 0.4029 1 2158 2158 0 0 1 50914 4768 31841 31858 58583 58583 0.17279793370289553 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN46_class_I_Rep_3 1 542.3661499023438 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 42.219 1 42.219 41.719 42.719 0 0 0 0 0.4029 1 8342 8342 0 0 1 50915 8939 31842 31859 58584 58584 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN46_class_I_Rep_3 1 542.3888549804688 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 83.109 1 83.109 82.609 83.609 0 0 0 0 0.4007 1 19721 19721 0.52476 0 1 50916 8939 31842 31859 58585 58585 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN46_class_I_Rep_3 1 542.3895263671875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 119.49 1 119.49 118.99 119.99 0 0 0 0 0.4029 1 29700 29700 0 0 1 50917 8939 31842 31859 58586 58586 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN46_class_I_Rep_3 1 542.716796875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 119.53 1 119.53 119.03 120.03 0 0 0 0 0.4029 1 29712 29712 0 0 1 50918 8939 31842 31859 58587 58587 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 542.7181396484375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 60.548 1 63.813 63.313 64.313 3.2654 0 0 0 0.4029 1 14175 14175 0 0 1 50919 8939 31842 31859 58588 58588 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 542.3140258789062 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 64.666 1 67.922 67.422 68.422 3.2556 0 0 0 0.4029 1 15421 15421 0 0 1 50920 8939 31842 31859 58589 58589 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 542.3897705078125 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.163 1 72.439 71.939 72.939 3.2761 0 0 0 0.4029 1 16779 16779 0 0 1 50921 8939 31842 31859 58590 58590 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 542.389892578125 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.449 1 72.725 72.225 73.225 3.2761 0 0 0 0.4029 1 16865 16865 0 0 1 50922 8939 31842 31859 58591 58591 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 542.3900146484375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 70.039 1 73.315 72.815 73.815 3.2761 0 0 0 0.4029 1 17042 17042 0 0 1 50923 8939 31842 31859 58592 58592 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_2 3 542.3900756835938 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 70.182 1 73.465 72.965 73.965 3.2828 0 0 0 0.4029 1 17085 17085 0 0 1 50924 8939 31842 31859 58593 58593 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_3 4 542.3900146484375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 64.14 1 67.314 66.814 67.814 3.1741 0 0 0 0.4029 1 15319 15319 0 0 1 50925 8939 31842 31859 58594 58594 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_3 4 542.39013671875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.21 1 72.414 71.914 72.914 3.2044 0 0 0 0.4029 1 16864 16864 0 0 1 50926 8939 31842 31859 58595 58595 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_3 4 542.3904418945312 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 69.722 1 72.926 72.426 73.426 3.2044 0 0 0 0.4029 1 17016 17016 0 0 1 50927 8939 31842 31859 58596 58596 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_3 4 542.3900146484375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 72.527 1 75.754 75.254 76.254 3.2271 0 0 0 0.4029 1 17858 17858 0 0 1 50928 8939 31842 31859 58597 58597 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN47_class_I_Rep_3 4 542.3904418945312 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 111.28 1 114.8 114.3 115.3 3.5207 0 0 0 0.4029 1 27310 27310 0 0 1 50929 8939 31842 31859 58598 58598 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.3900146484375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 62.963 1 66.437 65.937 66.937 3.4738 0 0 0 0.4029 1 14117 14117 0 0 1 50930 8939 31842 31859 58599 58599 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.3905029296875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 65.29 1 68.769 68.269 69.269 3.4792 0 0 0 0.4029 1 14830 14830 0 0 1 50931 8939 31842 31859 58600 58600 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.7179565429688 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 67.354 1 70.85 70.35 71.35 3.4964 0 0 0 0.4029 1 15460 15460 0 0 1 50932 8939 31842 31859 58601 58601 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.3898315429688 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 68.402 1 71.91 71.41 72.41 3.5083 0 0 0 0.4029 1 15772 15772 0 0 1 50933 8939 31842 31859 58602 58602 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.3899536132812 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 71.758 1 75.309 74.809 75.809 3.5505 0 0 0 0.4029 1 16764 16764 0 0 1 50934 8939 31842 31859 58603 58603 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.3897094726562 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 73.631 1 77.208 76.708 77.708 3.5779 0 0 0 0.4029 1 17297 17297 0 0 1 50935 8939 31842 31859 58604 58604 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_2 6 542.38916015625 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 87.502 1 91.23 90.73 91.73 3.7279 0 0 0 0.4029 1 20822 20822 0 0 1 50936 8939 31842 31859 58605 58605 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.82373046875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 62.48 1 65.99 65.49 66.49 3.5104 0 0 0 0.4029 1 13890 13890 0 0 1 50937 8939 31842 31859 58606 58606 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3905029296875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 62.712 1 66.221 65.721 66.721 3.5095 0 0 0 0.4029 1 13962 13962 0 0 1 50938 8939 31842 31859 58607 58607 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3890991210938 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 63.264 1 66.773 66.273 67.273 3.5091 0 0 0 0.4029 1 14129 14129 0 0 1 50939 8939 31842 31859 58608 58608 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3901977539062 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 67.19 1 70.698 70.198 71.198 3.5077 0 0 0 0.4029 1 15320 15320 0 0 1 50940 8939 31842 31859 58609 58609 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3897094726562 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 67.489 1 70.997 70.497 71.497 3.5077 0 0 0 0.4029 1 15409 15409 0 0 1 50941 8939 31842 31859 58610 58610 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3895874023438 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 68.59 1 72.099 71.599 72.599 3.5094 0 0 0 0.4029 1 15737 15737 0 0 1 50942 8939 31842 31859 58611 58611 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3897705078125 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 74.093 1 77.643 77.143 78.143 3.5505 0 0 0 0.4029 1 17357 17357 0 0 1 50943 8939 31842 31859 58612 58612 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3898315429688 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 76.937 1 80.538 80.038 81.038 3.6016 0 0 0 0.4029 1 18142 18142 0 0 1 50944 8939 31842 31859 58613 58613 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3897705078125 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 80.552 1 84.215 83.715 84.715 3.6635 0 0 0 0.4029 1 19060 19060 0 0 1 50945 8939 31842 31859 58614 58614 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3895263671875 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 81.047 1 84.71 84.21 85.21 3.6635 0 0 0 0.4029 1 19184 19184 0 0 1 50946 8939 31842 31859 58615 58615 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.38916015625 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 82.32 1 86.027 85.527 86.527 3.7066 0 0 0 0.4029 1 19508 19508 0 0 1 50947 8939 31842 31859 58616 58616 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.3888549804688 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 84.968 1 88.718 88.218 89.218 3.7494 0 0 0 0.4029 1 20155 20155 0 0 1 50948 8939 31842 31859 58617 58617 0.22711146561300666 VRKLKKALK 9 Unmodified _VRKLKKALK_ 0 0 0 L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense L1M4a1_dup1179|chr7:37838479-37840458:+|1.4365071337252082|0.0204358716026648|6.14|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 542.2630615234375 2 542.389868 1082.76518 NaN NaN NaN NaN NaN NaN NaN 115.3 1 118.94 118.44 119.44 3.6433 0 0 0 0.4029 1 27428 27428 0 0 1 50949 8939 31842 31859 58618 58618 0.22711146561300666 VRKLKKKKKS 10 Unmodified _VRKLKKKKKS_ 0 0 0 L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|36|3|sense L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|36|3|sense L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 621.9429321289062 2 621.940257 1241.86596 NaN NaN NaN NaN NaN NaN NaN 84.923 1 84.923 84.423 85.423 0 0 0 0 0.53105 1 20232 20232 0 0 1 50950 13430 31843 31860 58619 58619 0.25470178544173905 VRKLQKKK 8 Unmodified _VRKLQKKK_ 0 0 0 Tigger1_dup734|chr1:198164444-198166949:-|1.5035357587594504|0.0263946035041402|5.83|151.0|47|2|sense Tigger1_dup734|chr1:198164444-198166949:-|1.5035357587594504|0.0263946035041402|5.83|151.0|47|2|sense Tigger1_dup734|chr1:198164444-198166949:-|1.5035357587594504|0.0263946035041402|5.83|151.0|47|2|sense MSMS UPN47_class_I_Rep_3 4 514.358642578125 2 514.358568 1026.70258 NaN NaN NaN NaN NaN NaN NaN 110.48 1 114.01 113.51 114.51 3.529 0 0 0 0.40746 1 27114 27114 0.69038 0 1 50951 33177 31844 31861 58620 58620 0.19030000493125954 VRKNHQVKAA 10 Unmodified _VRKNHQVKAA_ 0 0 0 ENST00000462572.1_1_7:143479852-143480367:+|nuORF ENST00000462572.1_1_7:143479852-143480367:+|nuORF ENST00000462572.1_1_7:143479852-143480367:+|nuORF MSMS UPN47_class_I_Rep_3 4 575.843017578125 2 575.843813 1149.67307 NaN NaN NaN NaN NaN NaN NaN 84.138 1 87.488 86.988 87.988 3.35 0 0 0 0.53105 1 21113 21113 1.4819 0 1 50952 6868 31845 31862 58621 58621 0.10422436476983421 VRKPGGVP 8 Unmodified _VRKPGGVP_ 0 0 0 REV__ENSG00000087586|ENST00000395915|AURKA REV__ENSG00000087586|ENST00000395915|AURKA MSMS UPN47_class_I_Rep_3 4 405.2546081542969 2 405.253237 808.491922 NaN NaN NaN NaN NaN NaN NaN 26.585 1 29.933 29.433 30.433 3.3478 0 0 0 0.40798 1 3911 3911 0 0 1 + 50953 17983 31846 31863 58622 58622 0.08001543171099001 VRKPPEKILLR 11 Unmodified _VRKPPEKILLR_ 0 0 0 REV__nc|ENSG00000103313|O15553-1|MEFV REV__nc|ENSG00000103313|O15553-1|MEFV MULTI-MSMS UPN48_class_I_Rep_3 7 450.63006591796875 3 450.297756 1347.87144 0.020677 9.3107E-06 -1.6513 -0.00074356 -1.6306 -0.00073425 450.2957542880054 53.505 0.36739 57.089 56.93 57.297 3.5836 51 26 4 0 0 0 0.68132 1 11189 11189 0.40827 0 1 95933 + 50954 18224 31847 31864 58623 58623 0.2114185733598788 VRKQCLQN 8 Unmodified _VRKQCLQN_ 0 0 0 REV__nc|ENSG00000123552|Q70EL2-2|USP45 REV__nc|ENSG00000123552|Q70EL2-2|USP45 MSMS UPN48_class_I_Rep_3 7 494.7688293457031 2 494.771468 987.528384 NaN NaN NaN NaN NaN NaN NaN 41.636 1 45.282 44.782 45.782 3.6458 0 0 0 0.4044 1 7543 7543 4.756 2.1785 1 + 50955 31970 31848 31865 58624 58624 0.03412052005478472 VRKQTHRPME 10 Unmodified _VRKQTHRPME_ 0 0 0 L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|60|3|sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|60|3|sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|60|3|sense MSMS UPN47_class_I_Rep_2 3 641.3479614257812 2 641.345863 1280.67717 NaN NaN NaN NaN NaN NaN NaN 92.484 1 95.949 95.449 96.449 3.4652 0 0 0 0.53105 1 22859 22859 1.4819 0 1 50956 15420 31849 31866 58625 58625 0.048061579083878314 VRKQTNTEVGF 11 Unmodified _VRKQTNTEVGF_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 639.8438720703125 2 639.843676 1277.6728 0.43653 0.00027931 -0.34568 -0.00022118 0.090849 5.8129E-05 639.8434921265505 92.123 0.6048 95.749 95.52 96.125 3.626 402 84 6 0 0 0 0.52578 1 22142 22142 7.1017 0 1 3839500 50957 15487 31850 31867 58626 58626 0.04506971966452511 VRKRERERKAS 11 Unmodified _VRKRERERKAS_ 0 0 0 LTR9_dup323|chr7:36505607-36506219:+|1.7784501260233048|0.1212053908759986|3.88|151.0|31|2|anti-sense LTR9_dup323|chr7:36505607-36506219:+|1.7784501260233048|0.1212053908759986|3.88|151.0|31|2|anti-sense LTR9_dup323|chr7:36505607-36506219:+|1.7784501260233048|0.1212053908759986|3.88|151.0|31|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.6181945800781 3 472.283169 1413.82768 0.086058 4.0644E-05 0.48396 0.00022857 0.57002 0.00026921 472.2832769948158 93.096 0.54772 96.72 96.408 96.956 3.624 104 71 2 0 0 0 0.68024 1 22428 22428 0.50596 0.051438 1 260520 50958 15729 31851 31868 58627 58627 0.13731640891546704 VRKRGFEV 8 Unmodified _VRKRGFEV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS UPN47_class_I_Rep_3 4 495.7962341308594 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 75.995 1 79.252 78.752 79.752 3.2573 0 0 0 0.40746 1 18880 18880 0.69038 0 1 50959 1424 31852 31869 58628 58628 0.08184288636903148 VRKRGIEI 8 Unmodified _VRKRGIEI_ 0 0 0 L1PA5_dup3520|chr5:37445526-37447949:+|1.139775723154531|0.0673562250861505|4.08|151.0|51|3|sense L1PA5_dup3520|chr5:37445526-37447949:+|1.139775723154531|0.0673562250861505|4.08|151.0|51|3|sense L1PA5_dup3520|chr5:37445526-37447949:+|1.139775723154531|0.0673562250861505|4.08|151.0|51|3|sense MSMS UPN47_class_I_Rep_1 2 485.8117980957031 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 72.265 1 75.645 75.145 76.145 3.3799 0 0 0 0.40746 1 17672 17672 0.69038 0 1 50960 14459 31853 31870 58629 58629 0.12232861670997863 VRKRGLGG 8 Unmodified _VRKRGLGG_ 0 0 0 L1ME1_dup3868|chr2:111209519-111211236:-|1.120318554578719|0.3225356577321161|1.8|151.0|21|1|sense L1ME1_dup3868|chr2:111209519-111211236:-|1.120318554578719|0.3225356577321161|1.8|151.0|21|1|sense L1ME1_dup3868|chr2:111209519-111211236:-|1.120318554578719|0.3225356577321161|1.8|151.0|21|1|sense MSMS UPN47_class_I_Rep_3 4 421.7694396972656 2 421.769586 841.524619 NaN NaN NaN NaN NaN NaN NaN 87.868 1 91.255 90.755 91.755 3.3873 0 0 0 0.40798 1 22029 22029 0 0 1 50961 12403 31854 31871 58630 58630 0.09751750293958139 VRKRGPRGC 9 Unmodified _VRKRGPRGC_ 0 0 0 REV__ENST00000414729.1_1_1:205744259-205744529:-|nuORF REV__ENST00000414729.1_1_1:205744259-205744529:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 514.7974243164062 2 514.798352 1027.58215 -0.2488 -0.00012808 0.038959 2.0056E-05 -0.20984 -0.00010802 514.7980958514522 12.745 0.10237 16.195 16.159 16.261 3.45 13 9 2 0 0 0 0.50582 1 148 148 0 0 1 24920 + 50962 22209 31855 31872 58631 58631 0.06946269227887569 VRKRQGFAV 9 Unmodified _VRKRQGFAV_ 0 0 0 ENST00000549966.5_2_12:50135373-50143445:+|nuORF ENST00000549966.5_2_12:50135373-50143445:+|nuORF ENST00000549966.5_2_12:50135373-50143445:+|nuORF MSMS UPN47_class_I_Rep_1 2 530.821044921875 2 530.82235 1059.63015 NaN NaN NaN NaN NaN NaN NaN 75.706 1 79.109 78.609 79.609 3.4034 0 0 0 0.39518 1 18701 18701 1.8442 0 1 50963 7394 31856 31873 58632 58632 0.10271666419566827 VRKSLGRG 8 Unmodified _VRKSLGRG_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MULTI-MSMS UPN47_class_I_Rep_3 4 436.7747802734375 2 436.774868 871.535184 -0.34533 -0.00015083 0.34716 0.00015163 0.0018284 7.9858E-07 436.7749448013212 85.836 0.18573 89.208 89.188 89.374 3.3716 26 17 3 0 0 0 0.82752 1 21519 21519 0 0 1 815150 50964 3748 31857 31874 58633 58633 0.09427732948392986 VRKTKKSS 8 Unmodified _VRKTKKSS_ 0 0 0 REV__nc|ENSG00000170954|Q09FC8|ZNF415 REV__nc|ENSG00000170954|Q09FC8|ZNF415 MSMS UPN48_class_I_Rep_2 6 467.295654296875 2 467.295633 932.576714 NaN NaN NaN NaN NaN NaN NaN 84.517 1 88.211 87.711 88.711 3.6937 0 0 0 0.40753 1 20111 20111 0.6015 0 1 + 50965 32057 31858 31875 58634 58634 0.10772868917047163 VRKTPGESP 9 Unmodified _VRKTPGESP_ 0 0 0 ENST00000382888.3_1_4:1953834-1954747:+|nuORF ENST00000382888.3_1_4:1953834-1954747:+|nuORF ENST00000382888.3_1_4:1953834-1954747:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.77166748046875 2 485.769448 969.524344 NaN NaN NaN NaN NaN NaN NaN 23.046 1 26.689 26.189 27.189 3.6432 0 0 0 0.39598 1 2447 2447 1.6526 0 1 50966 6502 31859 31876 58635 58635 0.03836285783427229 VRKYKGRW 8 Unmodified _VRKYKGRW_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MSMS UPN48_class_I_Rep_3 7 546.8255615234375 2 546.824892 1091.63523 NaN NaN NaN NaN NaN NaN NaN 90.148 1 93.995 93.495 94.495 3.847 0 0 0 0.40746 1 21402 21402 0.69038 0 1 + 50967 19268 31860 31877 58636 58636 0.09307970282179667 VRKYLASE 8 Unmodified _VRKYLASE_ 0 0 0 Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|9|1|sense;Tigger2_dup1326|chr7:105364702-105365175:-|1.4319064535906172|0.0085798393349852|7.38|151.0|18|3|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|9|1|sense Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 482.7956237792969 2 483.274367 964.53418 NaN NaN NaN NaN NaN NaN NaN 36.268 1 36.268 35.768 36.768 0 0 0 0 0.40625 1 6703 6703 2.3027 0 1 50968 33279 31861 31878 58637 58637 0.05049473788801606 VRKYLSLI 8 Unmodified _VRKYLSLI_ 0 0 0 L1ME2z_dup23|chr1:8581029-8581707:-|1.069328689943798|0.0109428574572113|6.61|150.0|12|2|sense L1ME2z_dup23|chr1:8581029-8581707:-|1.069328689943798|0.0109428574572113|6.61|150.0|12|2|sense L1ME2z_dup23|chr1:8581029-8581707:-|1.069328689943798|0.0109428574572113|6.61|150.0|12|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.3188171386719 2 496.318577 990.622602 0.18631 9.2471E-05 -0.027636 -1.3716E-05 0.15868 7.8755E-05 496.3184653352489 43.591 0.72828 47.102 46.711 47.439 3.5103 90 60 2 0 0 0 0.82752 1 8128 8128 7.9102 1.187 1 157900 50969 12558 31862 31879 58638 58638 0.12691514099276446 VRKYVFLV 8 Unmodified _VRKYVFLV_ 0 0 0 L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|78|1|anti-sense L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|78|1|anti-sense L1MA9_dup10348|chrX:151399917-151401751:-|2.07920663124117|0.1248657314439926|4.06|151.0|78|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 512.8223266601562 2 512.32112 1022.62769 0.33295 0.00017058 -0.87344 -0.00044748 -0.54049 -0.0002769 512.8220013115065 102.42 0.039291 105.91 105.89 105.93 3.4873 7 5 2 0 0 0 0.82752 1 25180 25180 0.79363 0.10326 1 85465 50970 10077 31863 31880 58639 58639 0.11727817961889286 VRLFKCRY 8 Unmodified _VRLFKCRY_ 0 0 0 L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|48|2|anti-sense L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|48|2|anti-sense L1M5_dup2400|chr1:155367292-155367992:-|2.5863928880582843|0.0352381364953252|6.2|151.0|48|2|anti-sense MSMS UPN46_class_I_Rep_3 1 542.7499389648438 2 542.807854 1083.60115 NaN NaN NaN NaN NaN NaN NaN 83.513 1 83.513 83.013 84.013 0 0 0 0 0.40746 1 19841 19841 0.69038 0 1 50971 9119 31864 31881 58640 58640 0.06269805798910966 VRLFYSNL 8 Unmodified _VRLFYSNL_ 0 0 0 Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|161|3|anti-sense Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|161|3|anti-sense Tigger2_dup2542|chr18:9214035-9216564:+|1.4192594954628568|0.0778435855423719|4.19|151.0|161|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 505.7666015625 2 506.284734 1010.55492 0.20946 0.00010605 -1.6287 -0.00082461 -1.4193 -0.00071856 506.28340217401427 46.493 0.048271 50.012 49.968 50.017 3.5192 4 2 2 0 0 0 0.72333 1 9074 9074 3.9444 0 1 53003 50972 33307 31865 31882 58641 58641 0.05006064168458124 VRLHVHCH 8 Unmodified _VRLHVHCH_ 0 0 0 REV__AluSz_dup86949|chr17:42302652-42302965:+|1.3910243128067736|0.2507316467649388|2.47|151.0|13|1|anti-sense REV__AluSz_dup86949|chr17:42302652-42302965:+|1.3910243128067736|0.2507316467649388|2.47|151.0|13|1|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7664489746094 2 500.76652 999.518488 NaN NaN NaN NaN NaN NaN NaN 26.919 1 30.482 29.982 30.982 3.5629 0 0 0 0.40798 1 3384 3384 0 0 1 + 50973 17210 31866 31883 58642 58642 0.0187090879076095 VRLHYTLQ 8 Unmodified _VRLHYTLQ_ 0 0 0 REV__ENSG00000180479|ENST00000451802|ZNF571 REV__ENSG00000180479|ENST00000451802|ZNF571 MSMS UPN48_class_I_Rep_1 5 515.7383422851562 2 515.295633 1028.57671 NaN NaN NaN NaN NaN NaN NaN 40.109 1 43.613 43.113 44.113 3.5048 0 0 0 0.40625 1 7159 7159 2.3027 0 1 + 50974 20706 31867 31884 58643 58643 0.06356868917032443 VRLIRVNK 8 Unmodified _VRLIRVNK_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS UPN47_class_I_Rep_3 4 499.8272399902344 2 499.335093 996.655633 NaN NaN NaN NaN NaN NaN NaN 113.09 1 116.6 116.1 117.1 3.5098 0 0 0 0.40746 1 27732 27732 0.69038 0 1 + 50975 21213 31868 31885 58644 58644 0.15717140941990237 VRLKEASR 8 Unmodified _VRLKEASR_ 0 0 0 MLT1B_dup10138|chrX:1387741-1388103:+|2.0721245870140583|0.1539149829831016|3.75|151.0|8|3|sense MLT1B_dup10138|chrX:1387741-1388103:+|2.0721245870140583|0.1539149829831016|3.75|151.0|8|3|sense MLT1B_dup10138|chrX:1387741-1388103:+|2.0721245870140583|0.1539149829831016|3.75|151.0|8|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.79156494140625 2 479.793258 957.571963 0.18143 8.705E-05 -0.084428 -4.0508E-05 0.097004 4.6542E-05 479.7930516198913 83.793 0.69711 87.359 86.893 87.59 3.5655 123 83 2 0 0 0 0.82752 3 20919 20919;20927;20962 4.3292 0 1 122200 50976 16269 31869 31886 58645;58646;58647 58645 0.0914798477426757 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_1 5 511.8324279785156 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 15.206 1 18.724 18.224 19.224 3.5184 0 0 0 0.40798 1 562 562 0 0 1 50977 7425 31870 31887 58648 58648 0.14092256799210645 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_1 5 512.235595703125 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 18.896 1 22.427 21.927 22.927 3.5313 0 0 0 0.40798 1 1346 1346 0 0 1 50978 7425 31870 31887 58649 58649 0.14092256799210645 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_1 5 511.83282470703125 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 19.753 1 23.291 22.791 23.791 3.5378 0 0 0 0.40798 1 1552 1552 0 0 1 50979 7425 31870 31887 58650 58650 0.14092256799210645 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.8327331542969 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 16.107 1 19.76 19.26 20.26 3.6527 0 0 0 0.40798 1 754 754 0 0 1 50980 7425 31870 31887 58651 58651 0.14092256799210645 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.83233642578125 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 18.751 1 22.401 21.901 22.901 3.6509 0 0 0 0.40798 1 1309 1309 0 0 1 50981 7425 31870 31887 58652 58652 0.14092256799210645 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.8335266113281 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 19.784 1 23.434 22.934 23.934 3.6497 0 0 0 0.40798 1 1575 1575 0 0 1 50982 7425 31870 31887 58653 58653 0.14092256799210645 VRLKLTRH 8 Unmodified _VRLKLTRH_ 0 0 0 ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF ENST00000555071.5_1_14:75349324-75357795:+|nuORF MSMS UPN48_class_I_Rep_3 7 511.83251953125 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 18.774 1 22.361 21.861 22.861 3.5874 0 0 0 0.40798 1 1299 1299 0 0 1 50983 7425 31870 31887 58654 58654 0.14092256799210645 VRLLFGGA 8 Unmodified _VRLLFGGA_ 0 0 0 REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1 REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1 MSMS UPN48_class_I_Rep_1 5 416.7563171386719 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 109.18 1 112.81 112.31 113.31 3.6321 0 0 0 0.40738 1 26500 26500 0.79363 0 1 + 50984 18693 31871 31888 58655 58655 0.07418427313859866 VRLLGAQG 8 Unmodified _VRLLGAQG_ 0 0 0 L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|358|3|anti-sense;L1PA4_dup3970|chr5:93761071-93767199:+|2.3890379371470525|0.0716924078055841|5.06|151.0|356|3|anti-sense;L1PA4_dup165|chr1:62699406-62705398:-|1.074990643672343|0.15211310455781|2.82|151.0|359|3|anti-sense L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|358|3|anti-sense L1PA5_dup5164|chr7:96288294-96294442:+|1.1201663718762165|0.0302933760733423|5.21|151.0|358|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 406.7756652832031 2 407.250695 812.486836 -0.025059 -1.0205E-05 0.69316 0.00028229 0.66811 0.00027209 407.2509748758342 17.193 0.13255 20.757 20.701 20.833 3.5637 22 17 2 0 0 0 0.72333 1 947 947 0 0 1 15828 50985 14328 31872 31889 58656 58656 0.07309239308472115 VRLLKKKKKK 10 Unmodified _VRLLKKKKKK_ 0 0 0 AluSz_dup11209|chr2:65125416-65125713:-|1.006605520487267|0.0195189865574971|5.69|151.0|7|2|sense AluSz_dup11209|chr2:65125416-65125713:-|1.006605520487267|0.0195189865574971|5.69|151.0|7|2|sense AluSz_dup11209|chr2:65125416-65125713:-|1.006605520487267|0.0195189865574971|5.69|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 635.2247314453125 2 634.966274 1267.918 NaN NaN NaN NaN NaN NaN NaN 67.628 1 67.628 67.128 68.128 0 0 0 0 0.53105 1 15402 15402 0 0 1 50986 339 31873 31890 58657 58657 0.2947534195791377 VRLLLKPPL 9 Unmodified _VRLLLKPPL_ 0 0 0 ENST00000489955.1_1_2:165551047-165551113:-|nuORF ENST00000489955.1_1_2:165551047-165551113:-|nuORF ENST00000489955.1_1_2:165551047-165551113:-|nuORF MSMS UPN46_class_I_Rep_3 1 524.8902587890625 2 524.865695 1047.71684 NaN NaN NaN NaN NaN NaN NaN 56.309 1 56.309 55.809 56.809 0 0 0 0 0.4007 1 12276 12276 0.52476 0 1 50987 7064 31874 31891 58658 58658 0.19488652921404537 VRLLSLYT 8 Unmodified _VRLLSLYT_ 0 0 0 HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense MSMS UPN47_class_I_Rep_1 2 482.7951354980469 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 113.06 1 116.63 116.13 117.13 3.572 0 0 0 0.40746 1 27884 27884 0.69038 0 1 50988 8021 31875 31892 58659 58659 0.09207234828284072 VRLLSLYT 8 Unmodified _VRLLSLYT_ 0 0 0 HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense MSMS UPN47_class_I_Rep_2 3 482.7955017089844 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 118.43 1 121.91 121.41 122.41 3.4822 0 0 0 0.40746 1 28978 28978 0.69038 0 1 50989 8021 31875 31892 58660 58660 0.09207234828284072 VRLLSLYT 8 Unmodified _VRLLSLYT_ 0 0 0 HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|103|3|sense MSMS UPN47_class_I_Rep_2 3 482.7956848144531 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 119.67 1 123.15 122.65 123.65 3.4793 0 0 0 0.40746 1 29323 29323 0.69038 0 1 50990 8021 31875 31892 58661 58661 0.09207234828284072 VRLLVMLGHGC 11 Unmodified _VRLLVMLGHGC_ 0 0 0 REV__ENSG00000196208|ENST00000381486|GREB1 REV__ENSG00000196208|ENST00000381486|GREB1 MSMS UPN48_class_I_Rep_2 6 599.3320922851562 2 599.333378 1196.6522 NaN NaN NaN NaN NaN NaN NaN 59.479 1 62.966 62.466 63.466 3.4868 0 0 0 0.38417 1 13051 13051 1.3295 0.63916 1 + 50991 21021 31876 31893 58662 58662 0.06174386781481189 VRLPPVNR 8 Unmodified _VRLPPVNR_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000546293.1_1_11:72406726-72408040:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MSMS UPN47_class_I_Rep_1 2 475.800537109375 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 111.31 1 114.89 114.39 115.39 3.572 0 0 0 0.40746 1 27454 27454 0.69038 0 1 50992 5160 31877 31894 58663 58663 0.10532592499509974 VRLRFKKKK 9 Unmodified _VRLRFKKKK_ 0 0 0 AluSx3_dup22257|chr12:120896494-120896794:+|1.151200753550431|0.0122548695292478|6.55|151.0|4|1|sense;AluSx_dup80828|chr13:50038987-50039262:-|1.0067487401797952|0.0722656185577349|3.8|151.0|11|3|sense;AluSz6_dup36619|chr15:50017979-50018287:-|1.4365071337252082|0.003043423568293|8.88|151.0|4|1|sense AluSx3_dup22257|chr12:120896494-120896794:+|1.151200753550431|0.0122548695292478|6.55|151.0|4|1|sense AluSx3_dup22257|chr12:120896494-120896794:+|1.151200753550431|0.0122548695292478|6.55|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 602.3353271484375 2 601.914042 1201.81353 NaN NaN NaN NaN NaN NaN NaN 45.686 1 49.202 48.702 49.702 3.5162 0 0 0 0.4029 1 8837 8837 0 0 1 50993 300 31878 31895 58664 58664 0.22069640201198126 VRLRLPLKL 9 Unmodified _VRLRLPLKL_ 0 0 0 REV__nc|ENSG00000136100|Q86VN1-2|VPS36 REV__nc|ENSG00000136100|Q86VN1-2|VPS36 MSMS UPN46_class_I_Rep_3 1 554.3895263671875 2 554.389868 1106.76518 NaN NaN NaN NaN NaN NaN NaN 78.372 1 78.372 77.872 78.872 0 0 0 0 0.4029 1 18353 18353 0 0 1 + 50994 19173 31879 31896 58665 58665 0.21607146561291302 VRLRLPLKL 9 Unmodified _VRLRLPLKL_ 0 0 0 REV__nc|ENSG00000136100|Q86VN1-2|VPS36 REV__nc|ENSG00000136100|Q86VN1-2|VPS36 MSMS UPN46_class_I_Rep_3 1 554.8464965820312 2 554.389868 1106.76518 NaN NaN NaN NaN NaN NaN NaN 88.628 1 88.628 88.128 89.128 0 0 0 0 0.4029 1 21293 21293 0 0 1 + 50995 19173 31879 31896 58666 58666 0.21607146561291302 VRLRLRRL 8 Unmodified _VRLRLRRL_ 0 0 0 REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF MSMS UPN46_class_I_Rep_3 1 541.781494140625 2 541.375084 1080.73561 NaN NaN NaN NaN NaN NaN NaN 65.694 1 65.694 65.194 66.194 0 0 0 0 0.40746 1 14860 14860 0.69038 0 1 + 50996 21684 31880 31897 58667 58667 0.19847627335821016 VRLRRLDRQTR 11 Unmodified _VRLRRLDRQTR_ 0 0 0 REV__ENST00000544040.5_1_12:6715495-6716565:-|nuORF REV__ENST00000544040.5_1_12:6715495-6716565:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.30194091796875 3 490.302563 1467.88586 NaN NaN NaN NaN NaN NaN NaN 70.688 1 74.059 73.559 74.559 3.3713 0 0 0 0.38417 1 17192 17192 0.094841 0 1 + 50997 22927 31881 31898 58668 58668 0.17063322536819214 VRLRRRAR 8 Unmodified _VRLRRRAR_ 0 0 0 REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF MSMS UPN46_class_I_Rep_3 1 541.8613891601562 2 541.860132 1081.70571 NaN NaN NaN NaN NaN NaN NaN 113.12 1 113.12 112.62 113.62 0 0 0 0 0.40746 1 27939 27939 0.69038 0 1 + 50998 23168 31882 31899 58669 58669 0.1681268839047334 VRLRYFLKVT 10 Unmodified _VRLRYFLKVT_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MSMS UPN48_class_I_Rep_1 5 647.9030151367188 2 647.90334 1293.79213 NaN NaN NaN NaN NaN NaN NaN 88.971 1 92.594 92.094 93.094 3.6229 0 0 0 0.53105 1 21351 21351 1.4819 0 1 50999 2402 31883 31900 58670 58670 0.15698210381810895 VRLSGALLFS 10 Unmodified _VRLSGALLFS_ 0 0 0 REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|153|3|anti-sense REV__Charlie3_dup81|chr4:77930243-77932881:+|1.4610660891938234|0.1048603404840647|3.8|151.0|153|3|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8156127929688 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 80.351 1 80.351 79.851 80.851 0 0 0 0 0.53105 1 18925 18925 3.2813 0 1 + 51000 17381 31884 31901 58671 58671 0.09498308748334239 VRLSLFADEM 10 Unmodified _VRLSLFADEM_ 0 0 0 L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|80|3|sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|80|3|sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|80|3|sense MSMS UPN47_class_I_Rep_2 3 590.7587280273438 2 590.805174 1179.59579 NaN NaN NaN NaN NaN NaN NaN 63.078 1 66.334 65.834 66.834 3.2558 0 0 0 0.53105 1 14941 14941 1.4819 0.68827 1 51001 13747 31885 31902 58672 58672 0.013180374257672156 VRLVLCNFIT 10 Unmodified _VRLVLCNFIT_ 0 0 0 L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|160|3|anti-sense L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|160|3|anti-sense L1MD2_dup9894|chr18:77125933-77128521:+|3.865095307413728|0.1305952229632926|4.89|151.0|160|3|anti-sense MSMS UPN48_class_I_Rep_1 5 589.34228515625 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 84.263 1 87.86 87.36 88.36 3.5973 0 0 0 0.53105 1 20171 20171 1.3295 0.13619 1 51002 12054 31886 31903 58673 58673 0.0876321093903698 VRLWRIGLVV 10 Unmodified _VRLWRIGLVV_ 0 0 0 REV__ENSG00000254656|ENST00000649591|RTL1 REV__ENSG00000254656|ENST00000649591|RTL1 MSMS UPN47_class_I_Rep_2 3 404.26373291015625 3 404.264276 1209.771 NaN NaN NaN NaN NaN NaN NaN 46.094 1 49.448 48.948 49.948 3.3534 0 0 0 0.53105 1 9774 9774 0.77653 0 1 + 51003 21375 31887 31904 58674 58674 0.17450245072950565 VRMHKPRG 8 Unmodified _VRMHKPRG_ 0 0 0 REV__ENST00000451664.1_1_2:98275340-98280353:-|nuORF REV__ENST00000451664.1_1_2:98275340-98280353:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.7808837890625 2 490.78217 979.549788 NaN NaN NaN NaN NaN NaN NaN 63.864 1 67.22 66.72 67.72 3.3557 0 0 0 0.40625 1 15139 15139 2.3027 0 1 + 51004 18541 31888 31905 58675 58675 0.05919481824878403 VRMQKKLRL 9 Unmodified _VRMQKKLRL_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MSMS UPN46_class_I_Rep_3 1 586.3931884765625 2 586.376435 1170.73832 NaN NaN NaN NaN NaN NaN NaN 45.022 1 45.022 44.522 45.522 0 0 0 0 0.4007 1 9116 9116 0.52476 0 1 + 51005 18182 31889 31906 58676 58676 0.1597771467847906 VRMVCHLL 8 Unmodified _VRMVCHLL_ 0 0 0 REV__L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|56|2|anti-sense REV__L1MC1_dup6576|chr8:25254804-25255857:+|2.3068127909539724|0.0889727182688976|4.7|151.0|56|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7715759277344 2 485.769883 969.525212 NaN NaN NaN NaN NaN NaN NaN 20.08 1 23.73 23.23 24.23 3.6497 0 0 0 0.40604 1 1657 1657 2.5775 0 1 + 51006 26592 31890 31907 58677 58677 0.03923085627138789 VRNHTRNCE 9 Unmodified _VRNHTRNCE_ 0 0 0 REV__ENSG00000164761|ENST00000297350|TNFRSF11B REV__ENSG00000164761|ENST00000297350|TNFRSF11B MULTI-MSMS UPN47_class_I_Rep_1 2 564.76953125 2 564.769988 1127.52542 0.22092 0.00012477 1.3465 0.00076048 1.5674 0.00088525 564.769566255848 49.405 1.3442 53.064 52.659 54.003 3.6592 244 84 4 0 0 0 0.11683 10 10715 10680;10715;10752;10792;10835;10875;10913;10956;11006;11011 30.637 3.0077 1 782190 + 51007 20083 31891 31908 58678;58679;58680;58681;58682;58683;58684;58685;58686;58687 58679 -0.03323823119330882 VRNHTRNCE 9 Unmodified _VRNHTRNCE_ 0 0 0 REV__ENSG00000164761|ENST00000297350|TNFRSF11B REV__ENSG00000164761|ENST00000297350|TNFRSF11B MULTI-MSMS UPN47_class_I_Rep_2 3 564.7697143554688 2 564.769988 1127.52542 0.43008 0.0002429 0.70055 0.00039565 1.1306 0.00063854 564.7694823373472 49.858 1.5099 53.201 52.722 54.232 3.3431 208 84 4 0 0 0 0.11683 9 10857 10818;10857;10894;10934;10975;11019;11063;11111;11143 30.637 3.0077 1 665750 + 51008 20083 31891 31908 58688;58689;58690;58691;58692;58693;58694;58695;58696 58689 -0.03323823119330882 VRNHTRNCE 9 Unmodified _VRNHTRNCE_ 0 0 0 REV__ENSG00000164761|ENST00000297350|TNFRSF11B REV__ENSG00000164761|ENST00000297350|TNFRSF11B MULTI-SECPEP UPN47_class_I_Rep_2 3 565.2731323242188 2 564.769988 1127.52542 0.43008 0.0002429 0.70055 0.00039565 1.1306 0.00063854 564.7694823373472 49.858 1.5099 53.201 52.722 54.232 3.3431 208 84 4 0 0 0 0.1154 1 11105 11105 13.042 1.5478 1 665750 + 51009 20083 31891 31908 58697 58697 -0.03323823119330882 VRNHTRNCE 9 Unmodified _VRNHTRNCE_ 0 0 0 REV__ENSG00000164761|ENST00000297350|TNFRSF11B REV__ENSG00000164761|ENST00000297350|TNFRSF11B MULTI-MSMS UPN47_class_I_Rep_3 4 564.7697143554688 2 564.769988 1127.52542 0.48464 0.00027371 0.90445 0.0005108 1.3891 0.00078451 564.7694378518652 49.952 1.425 53.178 52.765 54.19 3.2262 206 78 4 0 0 0 0.11683 8 10954 10915;10954;11001;11018;11044;11086;11132;11249 30.637 3.0077 1 396710 + 51010 20083 31891 31908 58698;58699;58700;58701;58702;58703;58704;58705 58699 -0.03323823119330882 VRNNAREQ 8 Unmodified _VRNNAREQ_ 0 0 0 L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|34|2|sense L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|34|2|sense L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 493.7591857910156 2 493.759946 985.50534 NaN NaN NaN NaN NaN NaN NaN 67.129 1 70.58 70.08 71.08 3.4516 0 0 0 0.40746 1 15403 15403 0.69038 0 1 51011 13065 31892 31909 58706 58706 0.012007492123757402 VRNSGGLLK 9 Unmodified _VRNSGGLLK_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|123|3|sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|123|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.2878723144531 2 472.287808 942.561064 0.095171 4.4948E-05 0.052531 2.481E-05 0.1477 6.9758E-05 472.2879280303669 88.28 0.19405 91.902 91.844 92.038 3.6229 34 24 2 0 0 0 0.50582 1 21193 21193 0 0 1 141540 + 51012 30026 31893 31910 58707 58707 0.08748582400016858 VRNVNFLI 8 Unmodified _VRNVNFLI_ 0 0 0 L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|27|1|anti-sense L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|27|1|anti-sense L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.7908020019531 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 74.219 1 77.77 77.27 78.27 3.5505 0 0 0 0.40625 1 17389 17389 2.3027 0 1 51013 10279 31894 31911 58708 58708 0.08305770405377189 VRNVQTDGAF 10 Unmodified _VRNVQTDGAF_ 0 0 0 REV__L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|10|1|sense REV__L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 553.7844848632812 2 553.783087 1105.55162 NaN NaN NaN NaN NaN NaN NaN 55.79 1 59.291 58.791 59.791 3.5014 0 0 0 0.53105 1 11942 11942 2.7352 0.23671 1 + 51014 29872 31895 31912 58709 58709 0.0030676932381084043 VRNWFFFM 8 Unmodified _VRNWFFFM_ 0 0 0 REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF MSMS UPN47_class_I_Rep_1 2 573.7791748046875 2 573.781305 1145.54806 NaN NaN NaN NaN NaN NaN NaN 19.12 1 22.7 22.2 23.2 3.5806 0 0 0 0.40738 1 1709 1709 0.79363 0.10326 1 + 51015 22094 31896 31913 58710 58710 -0.018895719837473735 VRNYIVKYL 9 Unmodified _VRNYIVKYL_ 0 0 0 L1MC4_dup11742|chr8:37869623-37869903:+|3.032647439943214|0.1679981379760367|4.17|151.0|1|1|sense L1MC4_dup11742|chr8:37869623-37869903:+|3.032647439943214|0.1679981379760367|4.17|151.0|1|1|sense L1MC4_dup11742|chr8:37869623-37869903:+|3.032647439943214|0.1679981379760367|4.17|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.347900390625 2 584.347866 1166.68118 0.12746 7.4481E-05 0.12551 7.3341E-05 0.25297 0.00014782 584.3478666933834 23.801 0.075947 23.801 23.75 23.826 0 14 8 2 0 0 0 0.48643 1 3035 3035 2.0598 0 1 44966 51016 11398 31897 31914 58711 58711 0.10450570673765469 VRPCLKKG 8 Unmodified _VRPCLKKG_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|34|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|34|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 450.2752380371094 2 450.776022 899.537492 0.045756 2.0626E-05 0.15327 6.9091E-05 0.19903 8.9717E-05 450.77612479328724 74.18 0.14416 77.67 77.557 77.701 3.49 15 12 2 0 0 0 0.72333 1 17503 17503 0 0 1 41318 + 51017 24897 31898 31915 58712 58712 0.08370445361833845 VRPCLKKG 8 Unmodified _VRPCLKKG_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|34|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|34|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 450.275146484375 2 450.776022 899.537492 0.21809 9.831E-05 0.46893 0.00021138 0.68702 0.00030969 450.77590978191967 73.31 0.047089 76.847 76.822 76.87 3.5373 6 4 2 0 0 0 0.72333 1 17150 17150 0 0 1 32519 + 51018 24897 31898 31915 58713 58713 0.08370445361833845 VRPFLRTP 8 Unmodified _VRPFLRTP_ 0 0 0 ENST00000589846.1_1_17:40857922-40860933:-|nuORF ENST00000589846.1_1_17:40857922-40860933:-|nuORF ENST00000589846.1_1_17:40857922-40860933:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.301025390625 2 493.300719 984.586885 NaN NaN NaN NaN NaN NaN NaN 91.765 1 95.23 94.73 95.73 3.4652 0 0 0 0.40746 1 22703 22703 0.69038 0 1 51019 7604 31899 31916 58714 58714 0.09397476642288893 VRPHQGLR 8 Unmodified _VRPHQGLR_ 0 0 0 REV__L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|82|1|anti-sense REV__L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_2 3 481.8343505859375 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 113.21 1 116.73 116.23 117.23 3.5171 0 0 0 0.40604 1 27528 27528 2.5775 0 1 + 51020 30581 31900 31917 58715 58715 0.07466537696950581 VRPHQGLR 8 Unmodified _VRPHQGLR_ 0 0 0 REV__L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|82|1|anti-sense REV__L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|82|1|anti-sense MSMS UPN47_class_I_Rep_3 4 481.78759765625 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 18.129 1 21.484 20.984 21.984 3.3545 0 0 0 0.40746 1 1451 1451 0.69038 0 1 + 51021 30581 31900 31917 58716 58716 0.07466537696950581 VRPHQGLR 8 Unmodified _VRPHQGLR_ 0 0 0 REV__L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|82|1|anti-sense REV__L1PB4_dup26|chr1:42295827-42297951:-|4.437381462463847|0.0554853072334422|6.32|151.0|82|1|anti-sense MSMS UPN48_class_I_Rep_2 6 481.78729248046875 2 481.785767 961.556982 NaN NaN NaN NaN NaN NaN NaN 113.49 1 117.15 116.65 117.65 3.663 0 0 0 0.40604 1 27090 27090 2.5775 0 1 + 51022 30581 31900 31917 58717 58717 0.07466537696950581 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN46_class_I_Rep_3 1 634.378173828125 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 108.1 1 108.1 107.6 108.6 0 0 0 0 0.53105 1 26408 26408 6.2058 0 1 + 51023 20419 31901 31918 58718 58718 0.12213931110841258 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN46_class_I_Rep_3 1 634.3786010742188 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 108.23 1 108.23 107.73 108.73 0 0 0 0 0.53105 1 26455 26455 6.2058 0 1 + 51024 20419 31901 31918 58719 58719 0.12213931110841258 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN47_class_I_Rep_1 2 634.378173828125 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 106.57 1 110.28 109.78 110.78 3.7088 0 0 0 0.53105 1 26123 26123 6.2058 0 1 + 51025 20419 31901 31918 58720 58720 0.12213931110841258 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.3778076171875 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 105.67 1 109.2 108.7 109.7 3.5308 0 0 0 0.53105 1 25862 25862 10.074 0 1 + 51026 20419 31901 31918 58721 58721 0.12213931110841258 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.3779907226562 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 106.4 1 109.93 109.43 110.43 3.5367 0 0 0 0.53105 1 26013 26013 3.2813 0 1 + 51027 20419 31901 31918 58722 58722 0.12213931110841258 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.3792724609375 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 106.48 1 110.01 109.51 110.51 3.5367 0 0 0 0.53105 1 26031 26031 3.2813 0 1 + 51028 20419 31901 31918 58723 58723 0.12213931110841258 VRPHYKLLEL 10 Unmodified _VRPHYKLLEL_ 0 0 0 REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.37744140625 2 634.379697 1266.74484 NaN NaN NaN NaN NaN NaN NaN 106.52 1 110.05 109.55 110.55 3.5367 0 0 0 0.53105 1 26039 26039 3.2813 0 1 + 51029 20419 31901 31918 58724 58724 0.12213931110841258 VRPISLRK 8 Unmodified _VRPISLRK_ 0 0 0 HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|302|3|anti-sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|302|3|anti-sense HERV9NC-int_dup93|chr5:50370755-50376044:+|1.073853962647837|0.0098664386963336|6.77|150.0|302|3|anti-sense MSMS UPN47_class_I_Rep_3 4 484.8236999511719 2 484.821818 967.629084 NaN NaN NaN NaN NaN NaN NaN 23.292 1 26.642 26.142 27.142 3.3503 0 0 0 0.40746 1 2935 2935 0.69038 0 1 51030 8107 31902 31919 58725 58725 0.14397452050650372 VRPKNHSA 8 Unmodified _VRPKNHSA_ 0 0 0 L1MEc_dup8980|chr8:31060877-31062299:-|1.2394854934858186|0.0736133059810515|4.07|151.0|97|3|anti-sense L1MEc_dup8980|chr8:31060877-31062299:-|1.2394854934858186|0.0736133059810515|4.07|151.0|97|3|anti-sense L1MEc_dup8980|chr8:31060877-31062299:-|1.2394854934858186|0.0736133059810515|4.07|151.0|97|3|anti-sense MSMS UPN48_class_I_Rep_1 5 454.75653076171875 2 454.756675 907.498798 NaN NaN NaN NaN NaN NaN NaN 105.76 1 109.39 108.89 109.89 3.6277 0 0 0 0.40625 1 25480 25480 2.3027 0 1 51031 13153 31903 31920 58726 58726 0.041348560516553334 VRPKVHYA 8 Unmodified _VRPKVHYA_ 0 0 0 ENST00000497580.5_1_9:128094832-128103560:+|nuORF;ENSG00000165219.22,GAPVD1,chr9,+,I23.1,125342300,125345889|30|7.71|1|intron;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 ENST00000497580.5_1_9:128094832-128103560:+|nuORF ENST00000497580.5_1_9:128094832-128103560:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.28558349609375 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 39.519 1 43.175 42.675 43.675 3.6557 0 0 0 0.40738 1 6923 6923 0.79363 0 1 51032 4167 31904 31921 58727 58727 0.07004903608174118 VRPLAQRPR 9 Unmodified _VRPLAQRPR_ 0 0 0 MLT1F2_dup3195|chr9:112316151-112316641:+|1.171105696675448|0.0039633586930294|8.21|151.0|5|1|sense MLT1F2_dup3195|chr9:112316151-112316641:+|1.171105696675448|0.0039633586930294|8.21|151.0|5|1|sense MLT1F2_dup3195|chr9:112316151-112316641:+|1.171105696675448|0.0039633586930294|8.21|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 546.8394165039062 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 93.144 1 96.88 96.38 97.38 3.736 0 0 0 0.39518 1 23181 23181 1.8442 0 1 51033 16396 31905 31922 58728 58728 0.12542757685173456 VRPLHRKLK 9 Unmodified _VRPLHRKLK_ 0 0 0 L1M5_dup29816|chr9:111459793-111460928:+|1.005017449112951|0.0104547263817976|6.59|151.0|41|3|sense L1M5_dup29816|chr9:111459793-111460928:+|1.005017449112951|0.0104547263817976|6.59|151.0|41|3|sense L1M5_dup29816|chr9:111459793-111460928:+|1.005017449112951|0.0104547263817976|6.59|151.0|41|3|sense MSMS UPN47_class_I_Rep_1 2 574.2756958007812 2 573.882742 1145.75093 NaN NaN NaN NaN NaN NaN NaN 49.814 1 53.474 52.974 53.974 3.6592 0 0 0 0.4007 1 10869 10869 0.52476 0 1 51034 9136 31906 31923 58729 58729 0.18388494133023414 VRPLHSNV 8 Unmodified _VRPLHSNV_ 0 0 0 REV__MER50_dup2407|chr20:8537018-8537619:-|1.9493549606586944|0.0139155973698601|7.13|151.0|29|2|anti-sense REV__MER50_dup2407|chr20:8537018-8537619:-|1.9493549606586944|0.0139155973698601|7.13|151.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 461.2655029296875 2 461.266876 920.519199 NaN NaN NaN NaN NaN NaN NaN 87.749 1 87.749 87.249 88.249 0 0 0 0 0.40643 1 21044 21044 2.0598 0 1 + 51035 31373 31907 31924 58730 58730 0.0557602671146924 VRPLKKILL 9 Unmodified _VRPLKKILL_ 0 0 0 REV__nc|ENSG00000114374|O00507-2|USP9Y REV__nc|ENSG00000114374|O00507-2|USP9Y MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.386794 1078.75904 NaN NaN NaN NaN NaN NaN NaN 55.715 1 55.715 55.215 56.215 0 0 0 0 0.4029 1 12118 12118 0 0 1 + 51036 18526 31908 31925 58731 58731 0.2228062832980413 VRPLLSHF 8 Unmodified _VRPLLSHF_ 0 0 0 REV__L1MA9_dup5828|chr6:41983864-41984340:-|1.0133429500930422|0.0148623537680869|6.09|151.0|16|1|anti-sense REV__L1MA9_dup5828|chr6:41983864-41984340:-|1.0133429500930422|0.0148623537680869|6.09|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_2 3 484.7878723144531 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 37.409 1 40.808 40.308 41.308 3.3988 0 0 0 0.40604 1 7131 7131 2.5775 0 1 + 51037 25636 31909 31926 58732 58732 0.07525787750944346 VRPLPYIPIG 10 Unmodified _VRPLPYIPIG_ 0 0 0 REV__L1MC4_dup22874|chr19:5632229-5632734:-|1.32033630038344|0.0315299098838988|5.39|151.0|28|2|anti-sense REV__L1MC4_dup22874|chr19:5632229-5632734:-|1.32033630038344|0.0315299098838988|5.39|151.0|28|2|anti-sense MSMS UPN47_class_I_Rep_2 3 562.8428955078125 2 562.844959 1123.67537 NaN NaN NaN NaN NaN NaN NaN 110.95 1 114.47 113.97 114.97 3.5271 0 0 0 0.53105 1 27006 27006 1.8442 0 1 + 51038 26886 31910 31927 58733 58733 0.11847472162071426 VRPNVRIP 8 Unmodified _VRPNVRIP_ 0 0 0 REV__ENSG00000104738|ENST00000649973|MCM4 REV__ENSG00000104738|ENST00000649973|MCM4 MSMS UPN46_class_I_Rep_3 1 475.7997741699219 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 110.93 1 110.93 110.43 111.43 0 0 0 0 0.40746 1 27333 27333 0.69038 0 1 + 51039 18263 31911 31928 58734 58734 0.10532592499521343 VRPNVRIP 8 Unmodified _VRPNVRIP_ 0 0 0 REV__ENSG00000104738|ENST00000649973|MCM4 REV__ENSG00000104738|ENST00000649973|MCM4 MSMS UPN47_class_I_Rep_3 4 475.81658935546875 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 111.76 1 115.28 114.78 115.78 3.5207 0 0 0 0.40746 1 27445 27445 0.69038 0 1 + 51040 18263 31911 31928 58735 58735 0.10532592499521343 VRPPANRR 8 Unmodified _VRPPANRR_ 0 0 0 REV__L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|112|1|anti-sense REV__L1M4a2_dup668|chr6:12029218-12031841:-|1.3758263939452633|0.0329614653795993|5.38|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_2 3 483.2906188964844 2 483.291217 964.567881 NaN NaN NaN NaN NaN NaN NaN 25.014 1 28.497 27.997 28.997 3.483 0 0 0 0.40746 1 3410 3410 0.69038 0 1 + 51041 24524 31912 31929 58736 58736 0.08417940071217345 VRPPHPGA 8 Unmodified _VRPPHPGA_ 0 0 0 ENST00000607166.1_1_10:31607359-31607734:-|nuORF ENST00000607166.1_1_10:31607359-31607734:-|nuORF ENST00000607166.1_1_10:31607359-31607734:-|nuORF MSMS UPN48_class_I_Rep_1 5 415.73663330078125 2 415.735212 829.455871 NaN NaN NaN NaN NaN NaN NaN 96.59 1 100.2 99.702 100.7 3.6124 0 0 0 0.40738 1 23276 23276 0.79363 0 1 51042 7691 31913 31930 58737 58737 0.034320859942340576 VRPPKPRG 8 Unmodified _VRPPKPRG_ 0 0 0 THE1B_dup7264|chr5:55436235-55436581:+|2.0091433054438763|0.2357906456709826|3.09|151.0|9|2|sense THE1B_dup7264|chr5:55436235-55436581:+|2.0091433054438763|0.2357906456709826|3.09|151.0|9|2|sense THE1B_dup7264|chr5:55436235-55436581:+|2.0091433054438763|0.2357906456709826|3.09|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 453.7846984863281 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 72.728 1 76.201 75.701 76.701 3.4732 0 0 0 0.40798 1 17089 17089 0 0 1 51043 32887 31914 31931 58738 58738 0.09936323328042818 VRPPPIPAP 9 Unmodified _VRPPPIPAP_ 0 0 0 ENST00000339664.6_3_9:104161395-104162179:+|nuORF;ENST00000259395.4_1_9:104161395-104161696:+|nuORF;ENST00000374861.7_3_9:104161395-104162248:+|nuORF ENST00000339664.6_3_9:104161395-104162179:+|nuORF ENST00000339664.6_3_9:104161395-104162179:+|nuORF MSMS UPN47_class_I_Rep_3 4 472.2878723144531 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 88.417 1 91.804 91.304 92.304 3.3873 0 0 0 0.38478 1 22174 22174 4.3292 0 1 51044 5944 31915 31932 58739 58739 0.09150671893689832 VRPPPIPAP 9 Unmodified _VRPPPIPAP_ 0 0 0 ENST00000339664.6_3_9:104161395-104162179:+|nuORF;ENST00000259395.4_1_9:104161395-104161696:+|nuORF;ENST00000374861.7_3_9:104161395-104162248:+|nuORF ENST00000339664.6_3_9:104161395-104162179:+|nuORF ENST00000339664.6_3_9:104161395-104162179:+|nuORF MSMS UPN48_class_I_Rep_1 5 472.2882080078125 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 89.906 1 93.532 93.032 94.032 3.6255 0 0 0 0.39428 1 21605 21605 2.0598 0 1 51045 5944 31915 31932 58740 58740 0.09150671893689832 VRPPPIPAP 9 Unmodified _VRPPPIPAP_ 0 0 0 ENST00000339664.6_3_9:104161395-104162179:+|nuORF;ENST00000259395.4_1_9:104161395-104161696:+|nuORF;ENST00000374861.7_3_9:104161395-104162248:+|nuORF ENST00000339664.6_3_9:104161395-104162179:+|nuORF ENST00000339664.6_3_9:104161395-104162179:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.2888488769531 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 106.33 1 110.02 109.52 110.52 3.6899 0 0 0 0.39428 1 25078 25078 2.0598 0 1 51046 5944 31915 31932 58741 58741 0.09150671893689832 VRPPPKVL 8 Unmodified _VRPPPKVL_ 0 0 0 ENST00000585650.1_1_18:43673239-43675082:-|nuORF;ENST00000590324.5_1_18:43673239-43675082:-|nuORF ENST00000585650.1_1_18:43673239-43675082:-|nuORF ENST00000585650.1_1_18:43673239-43675082:-|nuORF MSMS UPN47_class_I_Rep_1 2 453.2999267578125 2 453.300188 904.585822 NaN NaN NaN NaN NaN NaN NaN 24.803 1 28.552 28.052 29.052 3.7495 0 0 0 0.40746 1 3304 3304 0.69038 0 1 51047 7580 31916 31933 58742 58742 0.12971262273367756 VRPPWRLVP 9 Unmodified _VRPPWRLVP_ 0 0 0 ENST00000572125.1_1_16:4409158-4409606:-|nuORF ENST00000572125.1_1_16:4409158-4409606:-|nuORF ENST00000572125.1_1_16:4409158-4409606:-|nuORF MSMS UPN47_class_I_Rep_1 2 560.3422241210938 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 94.743 1 98.494 97.994 98.994 3.7508 0 0 0 0.39428 1 23530 23530 2.0598 0.21551 1 51048 7516 31917 31934 58743 58743 0.11669427459037252 VRPPWRLVP 9 Unmodified _VRPPWRLVP_ 0 0 0 ENST00000572125.1_1_16:4409158-4409606:-|nuORF ENST00000572125.1_1_16:4409158-4409606:-|nuORF ENST00000572125.1_1_16:4409158-4409606:-|nuORF MSMS UPN47_class_I_Rep_3 4 560.341064453125 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 94.584 1 97.991 97.491 98.491 3.4068 0 0 0 0.39428 1 23536 23536 2.0598 0.21551 1 51049 7516 31917 31934 58744 58744 0.11669427459037252 VRPQPWVP 8 Unmodified _VRPQPWVP_ 0 0 0 nc|ENSG00000146013|O60609-2|GFRA3;ENSG00000146013|ENST00000274721|GFRA3 nc|ENSG00000146013|O60609-2|GFRA3 nc|ENSG00000146013|O60609-2|GFRA3 MSMS UPN46_class_I_Rep_3 1 489.7779846191406 2 489.779619 977.544686 NaN NaN NaN NaN NaN NaN NaN 86.799 1 86.799 86.299 87.299 0 0 0 0 0.40738 1 20764 20764 0.79363 0 1 51050 3422 31918 31935 58745 58745 0.05501501233891304 VRPRHPKAA 9 Unmodified _VRPRHPKAA_ 0 0 0 REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 516.3137817382812 2 516.314692 1030.61483 0.32399 0.00016728 -1.3812 -0.00071314 -1.0572 -0.00054585 516.3139368662759 94.79 0.12714 94.79 94.721 94.848 0 26 13 3 0 0 0 0.50088 1 22991 22991 0.52476 0 1 216480 + 51051 22204 31919 31936 58746 58746 0.10074799622361752 VRPRHPKAA 9 Unmodified _VRPRHPKAA_ 0 0 0 REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF MSMS UPN47_class_I_Rep_1 2 516.3137817382812 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 94.901 1 98.652 98.152 99.152 3.7508 0 0 0 0.4007 1 23566 23566 0.52476 0 1 + 51052 22204 31919 31936 58747 58747 0.10074799622361752 VRPRLGGY 8 Unmodified _VRPRLGGY_ 0 0 0 ENST00000556618.1_3_15:91500516-91500609:+|nuORF ENST00000556618.1_3_15:91500516-91500609:+|nuORF ENST00000556618.1_3_15:91500516-91500609:+|nuORF MSMS UPN48_class_I_Rep_1 5 459.2696838378906 2 459.269419 916.524284 NaN NaN NaN NaN NaN NaN NaN 39.501 1 43.006 42.506 43.506 3.5048 0 0 0 0.40604 1 6983 6983 2.5775 0 1 51053 7434 31920 31937 58748 58748 0.06268330574096126 VRPRLKRK 8 Unmodified _VRPRLKRK_ 0 0 0 AluJb_dup47898|chr7:37184631-37184912:+|1.1945189685735262|0.0111710969469472|6.74|151.0|3|1|sense AluJb_dup47898|chr7:37184631-37184912:+|1.1945189685735262|0.0111710969469472|6.74|151.0|3|1|sense AluJb_dup47898|chr7:37184631-37184912:+|1.1945189685735262|0.0111710969469472|6.74|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 526.8628540039062 2 526.861809 1051.70907 NaN NaN NaN NaN NaN NaN NaN 33.058 1 36.707 36.207 37.207 3.6497 0 0 0 0.40746 1 5178 5178 0.69038 0 1 51054 49 31921 31938 58749 58749 0.18527938444503889 VRPRLKRK 8 Unmodified _VRPRLKRK_ 0 0 0 AluJb_dup47898|chr7:37184631-37184912:+|1.1945189685735262|0.0111710969469472|6.74|151.0|3|1|sense AluJb_dup47898|chr7:37184631-37184912:+|1.1945189685735262|0.0111710969469472|6.74|151.0|3|1|sense AluJb_dup47898|chr7:37184631-37184912:+|1.1945189685735262|0.0111710969469472|6.74|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 526.8624267578125 2 526.861809 1051.70907 NaN NaN NaN NaN NaN NaN NaN 32.974 1 36.663 36.163 37.163 3.6896 0 0 0 0.40746 1 5067 5067 0.69038 0 1 51055 49 31921 31938 58750 58750 0.18527938444503889 VRPRLLLP 8 Unmodified _VRPRLLLP_ 0 0 0 ENST00000436040.6_2_9:33001468-33001570:-|nuORF ENST00000436040.6_2_9:33001468-33001570:-|nuORF ENST00000436040.6_2_9:33001468-33001570:-|nuORF MSMS UPN47_class_I_Rep_1 2 482.79547119140625 2 482.326737 962.63892 NaN NaN NaN NaN NaN NaN NaN 114.03 1 117.6 117.1 118.1 3.572 0 0 0 0.40738 1 28163 28163 0.79363 0 1 51056 6751 31922 31939 58751 58751 0.15610640056047487 VRPRLRPRVL 10 Unmodified _VRPRLRPRVL_ 0 0 0 ENST00000587167.1_1_17:74382350-74382590:+|nuORF ENST00000587167.1_1_17:74382350-74382590:+|nuORF ENST00000587167.1_1_17:74382350-74382590:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.3990478515625 2 631.420023 1260.82549 NaN NaN NaN NaN NaN NaN NaN 95.195 1 98.945 98.445 99.445 3.7508 0 0 0 0.53105 1 23633 23633 3.2813 1.7994 1 51057 7590 31923 31940 58752 58752 0.20551256944418128 VRPRPTKK 8 Unmodified _VRPRPTKK_ 0 0 0 AluJb_dup70000|chr10:3120659-3120826:-|1.052068277035559|0.4562660314283862|1.21|151.0|9|3|sense AluJb_dup70000|chr10:3120659-3120826:-|1.052068277035559|0.4562660314283862|1.21|151.0|9|3|sense AluJb_dup70000|chr10:3120659-3120826:-|1.052068277035559|0.4562660314283862|1.21|151.0|9|3|sense MSMS UPN48_class_I_Rep_2 6 491.3098449707031 2 491.319443 980.624333 NaN NaN NaN NaN NaN NaN NaN 109.15 1 112.83 112.33 113.33 3.6715 0 0 0 0.40746 1 25972 25972 0.69038 0 1 51058 59 31924 31941 58753 58753 0.1332456790788683 VRPRTGTL 8 Unmodified _VRPRTGTL_ 0 0 0 ENST00000588027.5_1_19:28284062-28284131:-|nuORF ENST00000588027.5_1_19:28284062-28284131:-|nuORF ENST00000588027.5_1_19:28284062-28284131:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 450.2752990722656 2 450.274701 898.534849 -0.049275 -2.2187E-05 0.50503 0.0002274 0.45575 0.00020521 450.27466893274004 85.407 0.26544 88.84 88.777 89.043 3.4329 50 33 3 0 0 0 0.82752 2 21262 21262;21275 2.0598 0 1 835180 51059 7595 31925 31942 58754;58755 58754 0.08152313228526964 VRPRTPKL 8 Unmodified _VRPRTPKL_ 0 0 0 LTR12C_dup1032|chr6:6612150-6613802:-|1.2623599977953783|0.0237995610283225|5.73|149.0|36|2|sense LTR12C_dup1032|chr6:6612150-6613802:-|1.2623599977953783|0.0237995610283225|5.73|149.0|36|2|sense LTR12C_dup1032|chr6:6612150-6613802:-|1.2623599977953783|0.0237995610283225|5.73|149.0|36|2|sense MSMS UPN47_class_I_Rep_2 3 483.7843322753906 2 483.813993 965.613434 NaN NaN NaN NaN NaN NaN NaN 39.898 1 43.269 42.769 43.769 3.3712 0 0 0 0.40746 1 7887 7887 0.69038 0 1 51060 15531 31926 31943 58756 58756 0.12925165533590643 VRPRYKRS 8 Unmodified _VRPRYKRS_ 0 0 0 REV__ENSG00000198113|ENST00000357503|TOR4A REV__ENSG00000198113|ENST00000357503|TOR4A MULTI-MSMS UPN46_class_I_Rep_3 1 531.3197021484375 2 531.319974 1060.6254 0.33671 0.0001789 -1.4467 -0.00076867 -1.11 -0.00058977 531.3192279955454 90.137 0.163 90.137 90.042 90.205 0 17 12 2 0 0 0 0.82752 1 21711 21711 2.3027 0 1 107770 + 51061 21113 31927 31944 58757 58757 0.09750782276796599 VRPSTLLL 8 Unmodified _VRPSTLLL_ 0 0 0 HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|77|2|sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|77|2|sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|77|2|sense MSMS UPN47_class_I_Rep_2 3 450.27490234375 2 449.789653 897.564752 NaN NaN NaN NaN NaN NaN NaN 87.018 1 90.458 89.958 90.958 3.4407 0 0 0 0.40798 1 21635 21635 0 0 1 51062 8089 31928 31945 58758 58758 0.1118725217387464 VRPTSRVK 8 Unmodified _VRPTSRVK_ 0 0 0 REV__ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|1|intron REV__ENSG00000187790.11,FANCM,chr14,+,I2.1,45137960,45140631|27|3.9|1|intron MSMS UPN47_class_I_Rep_2 3 471.7877197265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 21.884 1 25.308 24.808 25.808 3.4241 0 0 0 0.40625 1 2515 2515 2.3027 0 1 + 51063 20944 31929 31946 58759 58759 0.10392288636899139 VRPVLEAVIP 10 Unmodified _VRPVLEAVIP_ 0 0 0 REV__L1MA2_dup5419|chr11:17327361-17329823:-|2.590594985312117|0.4149912895721166|2.64|151.0|110|2|anti-sense REV__L1MA2_dup5419|chr11:17327361-17329823:-|2.590594985312117|0.4149912895721166|2.64|151.0|110|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.8407592773438 2 546.842416 1091.67028 NaN NaN NaN NaN NaN NaN NaN 92.649 1 96.114 95.614 96.614 3.4652 0 0 0 0.53105 1 22895 22895 1.4819 0.68827 1 + 51064 24889 31930 31947 58760 58760 0.12811168299458586 VRPVLKPWGGV 11 Unmodified _VRPVLKPWGGV_ 0 0 0 L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|99|3|anti-sense L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|99|3|anti-sense L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_3 7 604.3677978515625 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 101.93 1 105.71 105.21 106.21 3.776 0 0 0 0.38417 1 24093 24093 1.1933 0.66858 1 51065 9563 31931 31948 58761 58761 0.12861965801971564 VRQAVGRL 8 Unmodified _VRQAVGRL_ 0 0 0 REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF MSMS UPN47_class_I_Rep_1 2 449.7843933105469 2 449.782693 897.550834 NaN NaN NaN NaN NaN NaN NaN 64.933 1 68.289 67.789 68.789 3.3557 0 0 0 0.40625 1 15455 15455 2.3027 0 1 + 51066 22106 31932 31949 58762 58762 0.09796019465420613 VRQEEYIRYKL 11 Unmodified _VRQEEYIRYKL_ 0 0 0 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 MULTI-SECPEP UPN46_class_I_Rep_3 1 498.94317626953125 3 499.612181 1495.81471 0.25014 0.00012498 -0.79219 -0.00039579 -0.54205 -0.00027081 499.61227093866927 51.048 0.12625 51.048 51.013 51.139 0 21 12 3 0 0 0 22.551 1 10845 10845 0.50596 0 1 271620 + 51067 21003 31933 31950 58763 58763 0.08663764988796174 VRQGIPVL 8 Unmodified _VRQGIPVL_ 0 0 0 L1PA4_dup1350|chr2:135291598-135297711:-|4.147824265330817|0.0564208082077659|6.2|151.0|329|3|anti-sense;L1PA4_dup1349|chr2:135231811-135237948:+|1.9047801410028535|0.1713705438759407|3.47|151.0|332|3|anti-sense;L1PA3_dup8522|chr12:45370847-45376865:+|1.1796277739003815|0.150514701208573|2.97|151.0|188|1|anti-sense L1PA4_dup1350|chr2:135291598-135297711:-|4.147824265330817|0.0564208082077659|6.2|151.0|329|3|anti-sense L1PA4_dup1350|chr2:135291598-135297711:-|4.147824265330817|0.0564208082077659|6.2|151.0|329|3|anti-sense MSMS UPN48_class_I_Rep_2 6 441.29766845703125 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 72.599 1 76.164 75.664 76.664 3.5645 0 0 0 0.40738 1 17001 17001 0.79363 0 1 51068 14290 31934 31951 58764 58764 0.10438385376664883 VRQGVQVKLH 10 Unmodified _VRQGVQVKLH_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS UPN46_class_I_Rep_3 1 582.8555297851562 2 582.354014 1162.69348 0.51882 0.00030214 -1.181 -0.00068775 -0.66216 -0.00038561 582.3532166669189 99.429 0.078835 99.429 99.392 99.471 0 17 8 3 0 0 0 0.56333 1 24231 24231 1.4819 0 1 180980 + 51069 19439 31935 31952 58765 58765 0.11863607136797327 VRQGVQVKLH 10 Unmodified _VRQGVQVKLH_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS UPN47_class_I_Rep_1 2 582.3541259765625 2 582.354014 1162.69348 NaN NaN NaN NaN NaN NaN NaN 96.072 1 99.836 99.336 100.34 3.7648 0 0 0 0.53105 1 23832 23832 1.4819 0 1 + 51070 19439 31935 31952 58766 58766 0.11863607136797327 VRQGVQVKLH 10 Unmodified _VRQGVQVKLH_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS UPN47_class_I_Rep_3 4 582.3546142578125 2 582.354014 1162.69348 0.50652 0.00029497 -1.0803 -0.0006291 -0.57375 -0.00033412 582.3532156011341 96.209 0.066345 99.623 99.586 99.652 3.414 16 9 2 0 0 0 0.56333 1 23883 23883 1.4819 0.8804 1 106310 + 51071 19439 31935 31952 58767 58767 0.11863607136797327 VRQHIIFG 8 Unmodified _VRQHIIFG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS UPN48_class_I_Rep_3 7 485.2864685058594 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 57.845 1 61.377 60.877 61.877 3.5317 0 0 0 0.40738 1 12481 12481 0.79363 0 1 51072 1218 31936 31953 58768 58768 0.07004903608185487 VRQIFPLA 8 Unmodified _VRQIFPLA_ 0 0 0 REV__ENSG00000224051|ENST00000343938|CPTP REV__ENSG00000224051|ENST00000343938|CPTP MSMS UPN47_class_I_Rep_1 2 472.2894592285156 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 38.65 1 42.315 41.815 42.815 3.6652 0 0 0 0.3903 1 7472 7472 11.64 0.81637 1 + 51073 21286 31937 31954 58769 58769 0.09150671893689832 VRQIFPLA 8 Unmodified _VRQIFPLA_ 0 0 0 REV__ENSG00000224051|ENST00000343938|CPTP REV__ENSG00000224051|ENST00000343938|CPTP MSMS UPN47_class_I_Rep_1 2 472.2897033691406 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 38.791 1 42.456 41.956 42.956 3.6652 0 0 0 0.3903 1 7515 7515 11.64 0.81637 1 + 51074 21286 31937 31954 58770 58770 0.09150671893689832 VRQIFPLA 8 Unmodified _VRQIFPLA_ 0 0 0 REV__ENSG00000224051|ENST00000343938|CPTP REV__ENSG00000224051|ENST00000343938|CPTP MSMS UPN47_class_I_Rep_2 3 472.289794921875 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 39.202 1 42.581 42.081 43.081 3.3785 0 0 0 0.3903 1 7673 7673 11.64 0.81637 1 + 51075 21286 31937 31954 58771 58771 0.09150671893689832 VRQKLLKT 8 Unmodified _VRQKLLKT_ 0 0 0 REV__L1MA10_dup2430|chr8:120573967-120574550:+|1.3828044347157389|0.0648635336899463|4.41|150.0|17|3|sense REV__L1MA10_dup2430|chr8:120573967-120574550:+|1.3828044347157389|0.0648635336899463|4.41|150.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.3292541503906 2 493.329476 984.6444 -0.54194 -0.00026735 0.044243 2.1826E-05 -0.49769 -0.00024553 493.3295006794752 21.858 0.74358 25.208 24.802 25.545 3.3496 131 70 2 0 0 0 0.82752 1 2440 2440 0 0 1 75244 + 51076 24818 31938 31955 58772 58772 0.1514631884786013 VRQKYRTRQRR 11 Unmodified _VRQKYRTRQRR_ 0 0 0 L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.3099975585938 3 516.309829 1545.90766 0.34674 0.00017902 0.33829 0.00017466 0.68503 0.00035369 516.3097798212029 97.052 0.37028 100.83 100.66 101.04 3.7804 85 49 3 0 0 0 0.68081 1 23038 23038 0.45452 0.35968 1 185830 51077 8556 31939 31956 58773 58773 0.15654127285370123 VRQKYRTRQRR 11 Unmodified _VRQKYRTRQRR_ 0 0 0 L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.31005859375 3 516.309829 1545.90766 0.34649 0.0001789 -0.31698 -0.00016366 0.029514 1.5238E-05 516.3094403361804 97.265 0.44974 101.17 100.93 101.38 3.9084 81 60 2 0 0 0 0.68081 1 23077 23077 0.45452 0.45452 1 284920 51078 8556 31939 31956 58774 58774 0.15654127285370123 VRQKYRTRQRR 11 Unmodified _VRQKYRTRQRR_ 0 0 0 L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 516.309829 1545.90766 0.32376 0.00016716 1.946 0.0010047 2.2697 0.0011719 516.3112033149924 100.68 0.065872 100.68 100.62 100.69 0 -0.19894 0.0031037 NaN 0.45452 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 85993 51079 8556 31939 31956 0.15654127285370123 VRQKYRTRQRR 11 Unmodified _VRQKYRTRQRR_ 0 0 0 L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense L1M1_dup362|chr1:151671532-151674450:-|2.436693700823368|0.0432608043468052|5.82|150.0|8|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 516.309829 1545.90766 0.27566 0.00014232 -0.43286 -0.00022349 -0.15721 -8.1168E-05 516.3093022185883 97.334 0.10354 100.82 100.78 100.89 3.4836 -0.057018 -0.00058094 NaN 0.45452 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 75924 51080 8556 31939 31956 0.15654127285370123 VRQLAASLWE 10 Unmodified _VRQLAASLWE_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MSMS UPN47_class_I_Rep_1 2 586.823974609375 2 586.824755 1171.63496 NaN NaN NaN NaN NaN NaN NaN 65.121 1 68.477 67.977 68.977 3.3557 0 0 0 0.53105 1 15511 15511 1.4819 0.15237 1 51081 4133 31940 31957 58775 58775 0.056005057716674855 VRQLVLDN 8 Unmodified _VRQLVLDN_ 0 0 0 ENSG00000175520|ENST00000311659|UBQLN3 ENSG00000175520|ENST00000311659|UBQLN3 ENSG00000175520|ENST00000311659|UBQLN3 MSMS UPN48_class_I_Rep_2 6 479.2588195800781 2 478.779816 955.545079 NaN NaN NaN NaN NaN NaN NaN 33.864 1 37.525 37.025 38.025 3.6607 0 0 0 0.40746 1 5392 5392 0.69038 0 1 51082 4730 31941 31958 58776 58776 0.06552876163073051 VRQPQKII 8 Unmodified _VRQPQKII_ 0 0 0 REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF MSMS UPN47_class_I_Rep_2 3 491.25341796875 2 491.313826 980.613099 NaN NaN NaN NaN NaN NaN NaN 25.516 1 28.999 28.499 29.499 3.483 0 0 0 0.40746 1 3554 3554 0.69038 0 1 + 51083 19334 31942 31959 58777 58777 0.1220174581376341 VRQRFLRF 8 Unmodified _VRQRFLRF_ 0 0 0 L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|23|3|sense L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|23|3|sense L1MC_dup4168|chr9:37163579-37164131:-|3.1776792647476766|0.1399050175636427|4.51|151.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 561.3385620117188 2 561.338167 1120.66178 NaN NaN NaN NaN NaN NaN NaN 78.821 1 82.267 81.767 82.767 3.4456 0 0 0 0.40746 1 19610 19610 0.69038 0 1 51084 11061 31943 31960 58778 58778 0.10627659173519532 VRQRGGPV 8 Unmodified _VRQRGGPV_ 0 0 0 REV__ENST00000558641.2_1_15:101402159-101407614:+|nuORF REV__ENST00000558641.2_1_15:101402159-101407614:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 434.7591247558594 2 434.759218 867.503883 -0.38752 -0.00016848 0.21995 9.5627E-05 -0.16757 -7.2853E-05 434.7592732344153 78.651 0.87901 81.933 81.554 82.433 3.2816 204 89 3 0 0 0 0.82752 1 19612 19612 2.5775 0 1 630560 + 51085 23004 31944 31961 58779 58779 0.06483159914296266 VRQRIWLWL 9 Unmodified _VRQRIWLWL_ 0 0 0 REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|4|1|sense REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 635.3853149414062 2 635.382574 1268.7506 NaN NaN NaN NaN NaN NaN NaN 75.068 1 75.068 74.568 75.568 0 0 0 0 0.40038 1 17432 17432 0.6015 0 1 + 51086 27812 31945 31962 58780 58780 0.1269707441317678 VRQRIWLWL 9 Unmodified _VRQRIWLWL_ 0 0 0 REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|4|1|sense REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 635.3854370117188 2 635.382574 1268.7506 NaN NaN NaN NaN NaN NaN NaN 78.844 1 82.289 81.789 82.789 3.4456 0 0 0 0.40038 1 19617 19617 0.6015 0 1 + 51087 27812 31945 31962 58781 58781 0.1269707441317678 VRQRIWLWL 9 Unmodified _VRQRIWLWL_ 0 0 0 REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|4|1|sense REV__L1ME1_dup9880|chr5:76519077-76520338:-|1.4802048741954654|0.0057993962553541|8.0|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 635.3838500976562 2 635.382574 1268.7506 NaN NaN NaN NaN NaN NaN NaN 71.033 1 74.568 74.068 75.068 3.5359 0 0 0 0.40038 1 16548 16548 0.6015 0 1 + 51088 27812 31945 31962 58782 58782 0.1269707441317678 VRQRRPGT 8 Unmodified _VRQRRPGT_ 0 0 0 ENST00000421223.5_1_7:44613483-44613774:-|nuORF ENST00000421223.5_1_7:44613483-44613774:-|nuORF ENST00000421223.5_1_7:44613483-44613774:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.289794921875 2 485.288674 968.562795 NaN NaN NaN NaN NaN NaN NaN 27.966 1 31.299 30.799 31.799 3.3337 0 0 0 0.40659 1 4320 4320 1.8442 0.36234 1 51089 6683 31946 31963 58783 58783 0.07725636208613196 VRQRSLVP 8 Unmodified _VRQRSLVP_ 0 0 0 REV__ENST00000592467.1_1_19:1261169-1261487:+|nuORF REV__ENST00000592467.1_1_19:1261169-1261487:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 477.3658752441406 2 477.795801 953.577048 0.24034 0.00011483 0.52011 0.00024851 0.76045 0.00036334 477.7956761039034 107.58 0.13937 111.26 111.19 111.33 3.6724 32 18 2 0 0 0 0.72333 1 26350 26350 7.2892 2.0586 1 2464200 + 51090 23179 31947 31964 58784 58784 0.09840288636905825 VRQRSLVP 8 Unmodified _VRQRSLVP_ 0 0 0 REV__ENST00000592467.1_1_19:1261169-1261487:+|nuORF REV__ENST00000592467.1_1_19:1261169-1261487:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 477.7956848144531 2 477.795801 953.577048 0.21728 0.00010382 0.27088 0.00012943 0.48816 0.00023324 477.79558925888426 107.57 0.11195 111.25 111.21 111.32 3.6813 21 16 2 0 0 0 0.82752 1 25367 25367 10.074 1.3285 1 4111900 + 51091 23179 31947 31964 58785 58785 0.09840288636905825 VRQSKGGII 9 Unmodified _VRQSKGGII_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS UPN47_class_I_Rep_1 2 479.295166015625 2 479.295633 956.576714 -0.37149 -0.00017805 0.32766 0.00015705 -0.04383 -2.1008E-05 479.2954831199032 16.757 0.7016 20.279 20.051 20.752 3.5224 116 79 2 0 0 0 0.50582 1 1085 1085 0 0 1 47954 + 51092 18606 31948 31965 58786 58786 0.09668868917060536 VRQSPVGE 8 Unmodified _VRQSPVGE_ 0 0 0 REV__L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|2|1|sense REV__L1ME4b_dup21378|chr21:33238789-33239116:+|2.63898405197081|0.1999362093132623|3.72|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 436.2362365722656 2 436.235242 870.45593 NaN NaN NaN NaN NaN NaN NaN 95.917 1 99.53 99.03 100.03 3.6124 0 0 0 0.40604 1 23106 23106 2.5775 0 1 + 51093 28282 31949 31966 58787 58787 0.015520412035812114 VRQTLEEVW 9 Unmodified _VRQTLEEVW_ 0 0 0 ENSG00000172164.15,SNTB1,chr8,-,I7.1,120571365,120575085|40|11.32|1|intron ENSG00000172164.15,SNTB1,chr8,-,I7.1,120571365,120575085|40|11.32|1|intron ENSG00000172164.15,SNTB1,chr8,-,I7.1,120571365,120575085|40|11.32|1|intron MSMS UPN46_class_I_Rep_3 1 580.4650268554688 2 580.308938 1158.60332 NaN NaN NaN NaN NaN NaN NaN 46.159 1 46.159 45.659 46.659 0 0 0 0 0.39428 1 9443 9443 2.0598 0.21551 1 51094 4562 31950 31967 58788 58788 0.030365130177187893 VRRAIKFY 8 Unmodified _VRRAIKFY_ 0 0 0 REV__L1MA4_dup3485|chr5:149523680-149523961:-|1.124881303930911|0.0212086705715186|5.73|151.0|6|2|sense REV__L1MA4_dup3485|chr5:149523680-149523961:-|1.124881303930911|0.0212086705715186|5.73|151.0|6|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.8214111328125 2 526.821818 1051.62908 -0.038138 -2.0092E-05 -0.56707 -0.00029874 -0.6052 -0.00031883 526.8212781694687 25.019 0.039774 25.019 25.004 25.043 0 8 3 3 0 0 0 0.82752 1 3373 3373 0.79363 0 1 73993 + 51095 25157 31951 31968 58789 58789 0.10533452050663072 VRRAKLIL 8 Unmodified _VRRAKLIL_ 0 0 0 REV__ENSG00000132467|ENST00000254803|UTP3 REV__ENSG00000132467|ENST00000254803|UTP3 MULTI-MSMS UPN46_class_I_Rep_3 1 484.8401184082031 2 484.840011 967.665469 0.27974 0.00013563 0.38873 0.00018847 0.66847 0.0003241 484.84026350567 108.81 0.95669 108.81 108.68 109.64 0 89 74 2 0 0 0 0.82752 1 26597 26597 0.79363 0 1 12177000 + 51096 19020 31952 31969 58790 58790 0.1803432894737398 VRRCLTLL 8 Unmodified _VRRCLTLL_ 0 0 0 L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|307|2|anti-sense;L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|374|3|anti-sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|377|3|anti-sense;L1P1_dup1511|chr8:9654761-9656611:+|1.283604643729239|0.061583147452012|4.38|151.0|65|1|anti-sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|240|1|anti-sense;L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|365|3|anti-sense;L1PA5_dup9935|chr15:52472399-52478553:-|3.974070447944393|0.0721032808534088|5.78|151.0|241|1|anti-sense;L1PA5_dup652|chr1:212390466-212396588:+|2.1391356834155246|0.0442835685849311|5.59|151.0|298|2|anti-sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|232|1|anti-sense L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|307|2|anti-sense L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|307|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.7930603027344 2 487.302404 972.590256 0.24786 0.00012078 -1.3066 -0.00063671 -1.0587 -0.00051592 487.3018091179691 74.695 0.12727 78.285 78.208 78.335 3.59 22 15 2 0 0 0 0.82752 1 17591 17591 21.747 0 1 54813 51097 13467 31953 31970 58791 58791 0.10286403424629498 VRRCLTLL 8 Unmodified _VRRCLTLL_ 0 0 0 L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|307|2|anti-sense;L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|374|3|anti-sense;L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|377|3|anti-sense;L1P1_dup1511|chr8:9654761-9656611:+|1.283604643729239|0.061583147452012|4.38|151.0|65|1|anti-sense;L1PA4_dup3835|chr5:60875889-60882002:-|1.524352416984455|0.3472273898643399|2.13|151.0|240|1|anti-sense;L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|365|3|anti-sense;L1PA5_dup9935|chr15:52472399-52478553:-|3.974070447944393|0.0721032808534088|5.78|151.0|241|1|anti-sense;L1PA5_dup652|chr1:212390466-212396588:+|2.1391356834155246|0.0442835685849311|5.59|151.0|298|2|anti-sense;L1PA4_dup9395|chr12:27404618-27410753:+|2.309054914631784|0.2233794036322245|3.37|151.0|232|1|anti-sense L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|307|2|anti-sense L1PA5_dup6148|chr9:21819141-21825252:-|1.7042769682657113|0.0458515816432432|5.22|151.0|307|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.79150390625 2 487.302404 972.590256 0.28294 0.00013788 -2.4865 -0.0012117 -2.2035 -0.0010738 487.3013400104075 74.864 0.20743 78.43 78.302 78.509 3.5658 23 19 2 0 0 0 0.82752 1 17572 17572 12.532 0 1 96618 51098 13467 31953 31970 58792 58792 0.10286403424629498 VRREVWNR 8 Unmodified _VRREVWNR_ 0 0 0 REV__ENST00000423056.2_1_1:11541363-11541645:+|nuORF REV__ENST00000423056.2_1_1:11541363-11541645:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 557.4202880859375 2 557.815056 1113.61556 0.4698 0.00026206 1.4375 0.00080188 1.9073 0.0010639 557.816241165174 45.568 0.37526 49.084 48.94 49.316 3.5162 31 25 2 0 0 0 0.82752 1 8813 8813 2.3027 0 1 127280 + 51099 22249 31954 31971 58793 58793 0.06329594271414862 VRREWVRV 8 Unmodified _VRREWVRV_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|147|3|anti-sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|147|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 550.27734375 2 550.327799 1098.64105 0.40045 0.00022038 -1.8724 -0.0010304 -1.4719 -0.00081005 550.3261068420836 94.91 0.056351 94.91 94.884 94.94 0 6 4 2 0 0 0 0.72333 1 23033 23033 2.3027 0 1 73323 + 51100 30335 31955 31972 58794 58794 0.0956706879385365 VRREWVRV 8 Unmodified _VRREWVRV_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|147|3|anti-sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|147|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 550.327799 1098.64105 0.4904 0.00026988 -1.2695 -0.00069864 -0.77909 -0.00042875 550.3274513830861 91.319 0.034325 94.72 94.696 94.73 3.401 -0.029542 0.00033293 NaN 2.3027 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 33290 + 51101 30335 31955 31972 0.0956706879385365 VRREWVRV 8 Unmodified _VRREWVRV_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|147|3|anti-sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|147|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 550.327799 1098.64105 0.49052 0.00026995 -1.9845 -0.0010921 -1.494 -0.00082217 550.3267646899275 90.864 0.040337 94.619 94.598 94.639 3.7554 -0.13075 -0.00045404 NaN 2.3027 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 45078 + 51102 30335 31955 31972 0.0956706879385365 VRRFGQKFR 9 Unmodified _VRRFGQKFR_ 0 0 0 REV__ENSG00000278195|ENST00000610913|SSTR3 REV__ENSG00000278195|ENST00000610913|SSTR3 MULTI-MSMS UPN47_class_I_Rep_1 2 597.8556518554688 2 597.354348 1192.69414 0.45339 0.00027083 1.6335 0.00097576 2.0869 0.0012466 597.8559760840483 83.638 0.18918 87.204 87.149 87.338 3.5655 38 23 2 0 0 0 0.48846 1 20917 20917 1.8442 0 1 78862 + 51103 21441 31956 31973 58795 58795 0.10550446576507966 VRRGEIID 8 Unmodified _VRRGEIID_ 0 0 0 nc|ENSG00000132792|Q8WYA6-3|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1 nc|ENSG00000132792|Q8WYA6-3|CTNNBL1 nc|ENSG00000132792|Q8WYA6-3|CTNNBL1 MULTI-MSMS UPN48_class_I_Rep_3 7 479.2768859863281 2 479.277441 956.540328 0.26784 0.00012837 1.3621 0.00065283 1.63 0.0007812 479.27791722164733 74.965 1.8601 78.531 77.724 79.584 3.5659 409 209 3 0 0 0 0.82752 1 17381 17381 2.3027 0 1 496720 51104 2776 31957 31974 58796 58796 0.06031992020336929 VRRGKARL 8 Unmodified _VRRGKARL_ 0 0 0 ENST00000565468.5_1_7:140774038-140774092:+|nuORF ENST00000565468.5_1_7:140774038-140774092:+|nuORF ENST00000565468.5_1_7:140774038-140774092:+|nuORF MSMS UPN48_class_I_Rep_2 6 478.3163757324219 2 478.317235 954.619916 NaN NaN NaN NaN NaN NaN NaN 72.264 1 75.828 75.328 76.328 3.5645 0 0 0 0.40746 1 16902 16902 0.69038 0 1 51105 7485 31958 31975 58797 58797 0.14079103484971256 VRRGKDTV 8 Unmodified _VRRGKDTV_ 0 0 0 REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|42|1|anti-sense REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 465.77734375 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 84.4 1 87.997 87.497 88.497 3.5973 0 0 0 0.40625 1 20204 20204 2.3027 0 1 + 51106 32166 31959 31976 58798 58798 0.07307411740180214 VRRGKDTV 8 Unmodified _VRRGKDTV_ 0 0 0 REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|42|1|anti-sense REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|42|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 465.77752685546875 2 465.777608 929.540663 0.19218 8.9515E-05 -0.091074 -4.242E-05 0.10111 4.7094E-05 465.77742700962983 84.272 0.24313 87.966 87.93 88.173 3.6937 46 34 2 0 0 0 0.82752 1 20062 20062 2.3027 0 1 166940 + 51107 32166 31959 31976 58799 58799 0.07307411740180214 VRRGKDTV 8 Unmodified _VRRGKDTV_ 0 0 0 REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|42|1|anti-sense REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|42|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 465.777608 929.540663 0.2208 0.00010284 -0.086083 -4.0095E-05 0.13472 6.2749E-05 465.7772734806564 84.445 0.071404 88.194 88.167 88.238 3.7493 0.11421 4.1619E-06 NaN 2.3027 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 78826 + 51108 32166 31959 31976 0.07307411740180214 VRRGPTTR 8 Unmodified _VRRGPTTR_ 0 0 0 REV__ENSG00000136011|ENST00000388887|STAB2 REV__ENSG00000136011|ENST00000388887|STAB2 MSMS UPN47_class_I_Rep_1 2 471.79559326171875 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 118.33 1 121.94 121.44 122.44 3.6036 0 0 0 0.40798 1 29362 29362 0 0 1 + 51109 19169 31960 31977 58800 58800 0.07878233834310322 VRRGPTTR 8 Unmodified _VRRGPTTR_ 0 0 0 REV__ENSG00000136011|ENST00000388887|STAB2 REV__ENSG00000136011|ENST00000388887|STAB2 MSMS UPN48_class_I_Rep_1 5 471.7713928222656 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 116.43 1 120.06 119.56 120.56 3.6254 0 0 0 0.40798 1 28352 28352 0 0 1 + 51110 19169 31960 31977 58801 58801 0.07878233834310322 VRRGPTTR 8 Unmodified _VRRGPTTR_ 0 0 0 REV__ENSG00000136011|ENST00000388887|STAB2 REV__ENSG00000136011|ENST00000388887|STAB2 MSMS UPN48_class_I_Rep_2 6 471.7947692871094 2 471.783225 941.551896 NaN NaN NaN NaN NaN NaN NaN 116.93 1 120.59 120.09 121.09 3.6607 0 0 0 0.40798 1 28016 28016 0 0 1 + 51111 19169 31960 31977 58802 58802 0.07878233834310322 VRRGPYLPH 9 Unmodified _VRRGPYLPH_ 0 0 0 REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF MSMS UPN47_class_I_Rep_1 2 547.7240600585938 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 114.64 1 118.22 117.72 118.72 3.5809 0 0 0 0.40038 1 28335 28335 0.6015 0 1 + 51112 19220 31961 31978 58803 58803 0.07143379902504421 VRRGPYLPH 9 Unmodified _VRRGPYLPH_ 0 0 0 REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF MSMS UPN48_class_I_Rep_3 7 547.8151245117188 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 115.75 1 119.4 118.9 119.9 3.6433 0 0 0 0.40038 1 27549 27549 0.6015 0 1 + 51113 19220 31961 31978 58804 58804 0.07143379902504421 VRRGSAYF 8 Unmodified _VRRGSAYF_ 0 0 0 REV__L1M2c_dup75|chr4:13452073-13455939:-|3.898613414122664|0.1059276616703722|5.2|151.0|140|1|anti-sense REV__L1M2c_dup75|chr4:13452073-13455939:-|3.898613414122664|0.1059276616703722|5.2|151.0|140|1|anti-sense MSMS UPN46_class_I_Rep_3 1 478.283935546875 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 86.221 1 86.221 85.721 86.721 0 0 0 0 0.40746 1 20609 20609 0.69038 0 1 + 51114 24282 31962 31979 58805 58805 0.02447740194418202 VRRHLPCFS 9 Unmodified _VRRHLPCFS_ 0 0 0 L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|176|2|anti-sense L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|176|2|anti-sense L1PA6_dup4698|chr12:46582779-46586459:-|1.2947207889303445|0.0256363027709801|5.66|151.0|176|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.7984008789062 2 557.80056 1113.58657 NaN NaN NaN NaN NaN NaN NaN 58.14 1 61.627 61.127 62.127 3.487 0 0 0 0.38478 1 12659 12659 4.3292 0.38484 1 51115 14646 31963 31980 58806 58806 0.03431733650768365 VRRHRSIH 8 Unmodified _VRRHRSIH_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MSMS UPN47_class_I_Rep_1 2 530.8151245117188 2 530.81539 1059.61623 NaN NaN NaN NaN NaN NaN NaN 90.93 1 94.619 94.119 95.119 3.6899 0 0 0 0.40746 1 22706 22706 0.69038 0 1 51116 3330 31964 31981 58807 58807 0.0888043371112417 VRRIADID 8 Unmodified _VRRIADID_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MSMS UPN46_class_I_Rep_3 1 479.2772521972656 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 81.65 1 81.65 81.15 82.15 0 0 0 0 0.40746 1 19294 19294 0.69038 0 1 + 51117 18521 31965 31982 58808 58808 0.06031992020314192 VRRIADID 8 Unmodified _VRRIADID_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MSMS UPN48_class_I_Rep_1 5 479.2770690917969 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 72.833 1 76.306 75.806 76.806 3.4732 0 0 0 0.40746 1 17121 17121 0.69038 0 1 + 51118 18521 31965 31982 58809 58809 0.06031992020314192 VRRIADID 8 Unmodified _VRRIADID_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS UPN48_class_I_Rep_3 7 479.27740478515625 2 479.277441 956.540328 0.27208 0.0001304 -0.48483 -0.00023237 -0.21274 -0.00010196 479.27708748835823 73.048 1.1217 76.585 75.956 77.078 3.5373 134 101 2 0 0 0 0.82752 1 17002 17002 0.69038 0 1 173730 + 51119 18521 31965 31982 58810 58810 0.06031992020314192 VRRIADID 8 Unmodified _VRRIADID_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MSMS UPN48_class_I_Rep_3 7 478.9744873046875 2 479.277441 956.540328 NaN NaN NaN NaN NaN NaN NaN 77.534 1 81.135 80.635 81.635 3.6016 0 0 0 0.40746 1 18319 18319 0.69038 0 1 + 51120 18521 31965 31982 58811 58811 0.06031992020314192 VRRIVTLV 8 Unmodified _VRRIVTLV_ 0 0 0 REV__ENSG00000154447.15,SH3RF1,chr4,-,I8.1,169122267,169130045|25|5.49|1|intron REV__ENSG00000154447.15,SH3RF1,chr4,-,I8.1,169122267,169130045|25|5.49|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 478.3240051269531 2 478.324194 954.633835 -0.70881 -0.00033904 0.29675 0.00014194 -0.41207 -0.0001971 478.3243191456543 20.338 0.88905 23.688 23.356 24.245 3.3496 100 78 2 0 0 0 0.82752 1 1987 1987 0 0 1 57442 + 51121 19739 31966 31983 58812 58812 0.1547033619343665 VRRKANKQK 9 Unmodified _VRRKANKQK_ 0 0 0 L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|54|2|sense;L1PA4_dup6275|chr8:131960879-131966221:+|1.0481033146682612|0.1039270785259752|3.33|151.0|2|1|sense;L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|2|1|sense L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|54|2|sense L1PA2_dup3614|chr11:14628167-14634160:-|2.5182706301247526|0.1728743631835165|3.86|151.0|54|2|sense MSMS UPN48_class_I_Rep_2 6 564.359619140625 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 83.311 1 86.992 86.492 87.492 3.6814 0 0 0 0.4007 1 19796 19796 0.52476 0 1 51122 14196 31967 31984 58813 58813 0.14642429230934795 VRRKGFHK 8 Unmodified _VRRKGFHK_ 0 0 0 ENST00000564020.1_1_16:48530917-48531397:+|nuORF;nc|ENSG00000124615|Q9NZB8-4|MOCS1;nc|ENSG00000124615|Q9NZB8-3|MOCS1;nc|ENSG00000124615|Q9NZB8-6|MOCS1;nc|ENSG00000124615|Q9NZB8-5|MOCS1;nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1 ENST00000564020.1_1_16:48530917-48531397:+|nuORF ENST00000564020.1_1_16:48530917-48531397:+|nuORF MSMS UPN48_class_I_Rep_2 6 514.31640625 2 514.317235 1026.61992 NaN NaN NaN NaN NaN NaN NaN 87.789 1 91.517 91.017 92.017 3.7279 0 0 0 0.40404 1 20890 20890 5.2307 0.47466 1 51123 2478 31968 31985 58814 58814 0.10767103485000007 VRRKHTLL 8 Unmodified _VRRKHTLL_ 0 0 0 L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense MSMS UPN47_class_I_Rep_1 2 512.2416381835938 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 20.486 1 24.13 23.63 24.63 3.6436 0 0 0 0.40798 1 2067 2067 0 0 1 51124 12827 31969 31986 58815 58815 0.1409225679924475 VRRKHTLL 8 Unmodified _VRRKHTLL_ 0 0 0 L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense MSMS UPN47_class_I_Rep_1 2 511.8334045410156 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 21.612 1 25.287 24.787 25.787 3.6749 0 0 0 0.40798 1 2372 2372 0 0 1 51125 12827 31969 31986 58816 58816 0.1409225679924475 VRRKHTLL 8 Unmodified _VRRKHTLL_ 0 0 0 L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense L1ME3G_dup13963|chr16:23866526-23866911:-|2.430312701939799|0.0103368803588285|7.88|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 511.8328857421875 2 511.832717 1021.65088 NaN NaN NaN NaN NaN NaN NaN 20.524 1 24.172 23.672 24.672 3.648 0 0 0 0.40798 1 1781 1781 0 0 1 51126 12827 31969 31986 58817 58817 0.1409225679924475 VRRKKRKEA 9 Unmodified _VRRKKRKEA_ 0 0 0 REV__ENSG00000136327|ENST00000258829|NKX2-8 REV__ENSG00000136327|ENST00000258829|NKX2-8 MSMS UPN47_class_I_Rep_1 2 585.8810424804688 2 585.88073 1169.74691 NaN NaN NaN NaN NaN NaN NaN 83.858 1 87.424 86.924 87.924 3.5655 0 0 0 0.4007 1 20980 20980 0.52476 0 1 + 51127 19182 31970 31987 58818 58818 0.16882404639341075 VRRKSHWVGF 10 Unmodified _VRRKSHWVGF_ 0 0 0 L1MEc_dup16353|chr16:89389375-89389696:+|1.7400219246545163|0.0380362409369594|5.52|151.0|4|2|sense L1MEc_dup16353|chr16:89389375-89389696:+|1.7400219246545163|0.0380362409369594|5.52|151.0|4|2|sense L1MEc_dup16353|chr16:89389375-89389696:+|1.7400219246545163|0.0380362409369594|5.52|151.0|4|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 636.8609008789062 2 636.359631 1270.70471 0.37328 0.00023754 -1.2279 -0.00078139 -0.85463 -0.00054385 636.3585930289682 66.383 0.17752 69.642 69.579 69.757 3.2588 10 9 2 0 0 0 0.84575 1 15957 15957 1.4819 0.15237 1 57381 51128 13045 31971 31988 58819 58819 0.08018429230924085 VRRKSHWVGF 10 Unmodified _VRRKSHWVGF_ 0 0 0 L1MEc_dup16353|chr16:89389375-89389696:+|1.7400219246545163|0.0380362409369594|5.52|151.0|4|2|sense L1MEc_dup16353|chr16:89389375-89389696:+|1.7400219246545163|0.0380362409369594|5.52|151.0|4|2|sense L1MEc_dup16353|chr16:89389375-89389696:+|1.7400219246545163|0.0380362409369594|5.52|151.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 636.3562622070312 2 636.359631 1270.70471 0.44576 0.00028366 -1.2031 -0.0007656 -0.75734 -0.00048194 636.3588267546014 66.35 0.52049 69.535 69.253 69.774 3.1853 52 39 2 0 0 0 0.56333 2 15982 15982;15988 1.4819 0.15237 1 97040 51129 13045 31971 31988 58820;58821 58820 0.08018429230924085 VRRLAAPHP 9 Unmodified _VRRLAAPHP_ 0 0 0 REV__ENST00000254325.8_1_19:14073549-14074364:-|nuORF REV__ENST00000254325.8_1_19:14073549-14074364:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 508.8086853027344 2 508.809242 1015.60393 0.22154 0.00011272 -1.6696 -0.00084951 -1.4481 -0.00073679 508.80837238608524 55.586 0.57166 58.897 58.756 59.327 3.3102 41 34 2 0 0 0 0.48414 1 12716 12716 2.3027 0.24298 1 118580 + 51130 21530 31972 31989 58822 58822 0.09675397248076933 VRRLEPSDN 9 Unmodified _VRRLEPSDN_ 0 0 0 REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant REV__NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant MSMS UPN48_class_I_Rep_1 5 543.2985229492188 2 543.288537 1084.56252 NaN NaN NaN NaN NaN NaN NaN 30.395 1 33.937 33.437 34.437 3.542 0 0 0 0.39598 1 4356 4356 1.6526 0 1 + 51131 20773 31973 31990 58823 58823 0.023621716980869678 VRRLGGQG 8 Unmodified _VRRLGGQG_ 0 0 0 L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|311|3|anti-sense L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|311|3|anti-sense L1PA6_dup2174|chr5:132397847-132403147:+|1.5373708361791143|0.3804306714635708|2.01|151.0|311|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 421.75115966796875 2 421.751393 841.488233 -0.59524 -0.00025105 0.70205 0.00029609 0.1068 4.5045E-05 421.75151940834013 67.562 0.59655 70.754 70.373 70.969 3.1914 62 41 2 0 0 0 0.82752 1 16360 16360 0 0 1 70610 51132 14580 31974 31991 58824 58824 0.0611487339725727 VRRLGRLQGA 10 Unmodified _VRRLGRLQGA_ 0 0 0 REV__ENST00000287652.8_1_3:10290629-10291047:+|nuORF REV__ENST00000287652.8_1_3:10290629-10291047:+|nuORF MSMS UPN46_class_I_Rep_3 1 563.3519287109375 2 563.351806 1124.68906 NaN NaN NaN NaN NaN NaN NaN 93.17 1 93.17 92.67 93.67 0 0 0 0 0.53105 1 22572 22572 0 0 1 + 51133 21636 31975 31992 58825 58825 0.13170142713897803 VRRLKRSVP 9 Unmodified _VRRLKRSVP_ 0 0 0 ENSG00000227234|ENST00000449283|SPANXB1 ENSG00000227234|ENST00000449283|SPANXB1 ENSG00000227234|ENST00000449283|SPANXB1 MSMS UPN48_class_I_Rep_3 7 556.2994995117188 2 555.864549 1109.71454 NaN NaN NaN NaN NaN NaN NaN 40.931 1 44.582 44.082 45.082 3.6509 0 0 0 0.4007 1 7336 7336 0.52476 0 1 51134 5669 31976 31993 58826 58826 0.1640761723633659 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.248291015625 2 406.248486 810.48242 0.054937 2.2318E-05 0.23684 9.6217E-05 0.29178 0.00011853 406.24879229202827 82.648 0.79874 82.648 82.142 82.941 0 254 71 5 0 0 0 0.82752 1 19454 19454 0 0 1 75910000 51135 7110 31977 31994 58827 58827 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2484436035156 2 406.248486 810.48242 0.05956 2.4196E-05 0.23804 9.6703E-05 0.2976 0.0001209 406.2485742284305 84.116 0.25053 84.116 84.056 84.306 0 36 24 2 0 0 0 0.82752 1 20004 20004 0 0 1 308510 51136 7110 31977 31994 58828 58828 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2485046386719 2 406.248486 810.48242 0.061106 2.4824E-05 0.097496 3.9607E-05 0.1586 6.4432E-05 406.24849298598264 84.587 0.32423 84.587 84.544 84.868 0 52 30 2 0 0 0 0.82752 1 20200 20200 0 0 1 172300 51137 7110 31977 31994 58829 58829 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.2483215332031 2 406.248486 810.48242 0.063581 2.583E-05 0.15063 6.1192E-05 0.21421 8.7022E-05 406.2485481509699 85.492 0.094757 85.492 85.436 85.531 0 20 11 2 0 0 0 0.82752 1 20399 20399 0 0 1 125270 51138 7110 31977 31994 58830 58830 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.24896240234375 2 406.248486 810.48242 0.064003 2.6001E-05 0.59506 0.00024174 0.65906 0.00026774 406.2487700287589 85.681 0.25056 85.681 85.531 85.781 0 37 24 2 0 0 0 0.82752 1 20471 20471 0 0 1 69396 51139 7110 31977 31994 58831 58831 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 406.24853515625 2 406.248486 810.48242 0.064074 2.603E-05 0.42891 0.00017424 0.49298 0.00020027 406.24863815670534 101.12 0.28399 101.12 100.95 101.23 0 50 28 2 0 0 0 0.82752 2 24653 24653;24688 0 0 1 83642 51140 7110 31977 31994 58832;58833 58832 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MSMS UPN46_class_I_Rep_3 1 406.2487487792969 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 86.063 1 86.063 85.563 86.563 0 0 0 0 0.40738 1 20563 20563 0.79363 0 1 51141 7110 31977 31994 58834 58834 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.2488708496094 2 406.248486 810.48242 0.01438 5.8419E-06 0.28438 0.00011553 0.29876 0.00012137 406.2485555642265 80.771 0.46805 84.258 84.181 84.649 3.4874 68 48 2 0 0 0 0.82752 1 20170 20170 0 0 1 253200 51142 7110 31977 31994 58835 58835 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.2489013671875 2 406.248486 810.48242 0.017316 7.0345E-06 0.2915 0.00011842 0.30881 0.00012545 406.2486828605166 81.352 0.30862 84.839 84.649 84.957 3.4874 38 31 2 0 0 0 0.82752 1 20259 20259 0 0 1 83459 51143 7110 31977 31994 58836 58836 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.24847412109375 2 406.248486 810.48242 0.027156 1.1032E-05 0.55114 0.0002239 0.5783 0.00023493 406.24874006537436 83.046 0.25014 86.585 86.385 86.635 3.5386 33 24 2 0 0 0 0.82752 2 20726 20726;20774 0 0 1 112200 51144 7110 31977 31994 58837;58838 58837 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2489013671875 2 406.248486 810.48242 -0.64305 -0.00026124 1.1595 0.00047106 0.51648 0.00020982 406.2489564331377 81.316 0.22258 84.639 84.619 84.841 3.3231 30 25 2 0 0 0 0.82752 1 20398 20398 0 0 1 107360 51145 7110 31977 31994 58839 58839 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2489318847656 2 406.248486 810.48242 -0.64059 -0.00026024 1.3979 0.00056789 0.7573 0.00030765 406.2491692541808 82.384 0.070236 85.721 85.68 85.75 3.337 12 9 2 0 0 0 0.82752 1 20646 20646 0 0 1 55147 51146 7110 31977 31994 58840 58840 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.2484130859375 2 406.248486 810.48242 -0.62739 -0.00025488 0.903 0.00036684 0.27561 0.00011197 406.2488229274283 87.855 0.19324 91.243 91.137 91.33 3.3873 24 20 2 0 0 0 0.82752 1 22036 22036 0 0 1 48778 51147 7110 31977 31994 58841 58841 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 406.2489013671875 2 406.248486 810.48242 -0.64254 -0.00026103 1.2798 0.00051991 0.63725 0.00025888 406.2489791744074 81.587 0.21179 84.91 84.756 84.968 3.3231 26 21 2 0 0 0 0.72333 1 20398 20398 0 0 1 65796 51148 7110 31977 31994 58842 58842 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 406.248291015625 2 406.248486 810.48242 -0.11654 -4.7344E-05 0.2569 0.00010437 0.14036 5.7023E-05 406.2486768543464 79.223 1.1498 82.759 82.269 83.419 3.5352 475 132 5 0 0 0 0.82752 1 18789 18789 0 0 1 18617000 51149 7110 31977 31994 58843 58843 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 406.24853515625 2 406.248486 810.48242 0.077478 3.1475E-05 0.082421 3.3483E-05 0.1599 6.4959E-05 406.24861176299316 79.056 1.2148 82.689 82.241 83.455 3.6331 494 140 5 0 0 0 0.82752 1 18659 18659 0 0 1 21710000 51150 7110 31977 31994 58844 58844 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 406.248779296875 2 406.248486 810.48242 0.096576 3.9234E-05 0.52857 0.00021473 0.62514 0.00025396 406.2486379120624 108.34 0.29787 112.02 111.76 112.06 3.6813 62 31 2 0 0 0 0.72333 1 25540 25540 0 0 1 9354900 51151 7110 31977 31994 58845 58845 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 406.248486 810.48242 0.023412 9.511E-06 0.45564 0.0001851 0.47906 0.00019462 406.24864647805435 82.341 0.11519 85.853 85.82 85.935 3.5122 0.12621 -0.00019567 NaN 0 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 51723 51152 7110 31977 31994 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 406.248486 810.48242 -0.53204 -0.00021614 1.0641 0.00043227 0.53202 0.00021613 406.2489356964044 81.533 0.20694 84.916 84.776 84.983 3.3839 0.0037742 0.00022932 NaN 0 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 309270 51153 7110 31977 31994 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 406.248486 810.48242 -0.47542 -0.00019314 1.1066 0.00044955 0.63116 0.00025641 406.24893260394225 87.569 0.049614 91.016 90.973 91.023 3.4471 -0.11332 0.00011998 NaN 0 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 15758 51154 7110 31977 31994 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 406.248486 810.48242 -0.63781 -0.00025911 1.6528 0.00067143 1.0149 0.00041232 406.24925795158424 83.566 0.069107 86.916 86.865 86.934 3.35 0.17438 0.00079052 NaN 0 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 38164 51155 7110 31977 31994 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 406.248486 810.48242 -0.12477 -5.0688E-05 -0.057034 -2.317E-05 -0.18181 -7.3858E-05 406.2485057712783 83.136 0.071213 86.723 86.705 86.776 3.5871 -0.018124 -0.00059868 NaN 0 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 57329 51156 7110 31977 31994 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 406.248486 810.48242 0.082169 3.3381E-05 0.96735 0.00039299 1.0495 0.00042637 406.24884311161964 108.33 0.49495 112.01 111.72 112.21 3.6746 -0.0063115 0.00028377 NaN 0 127 57 3 NaN NaN NaN NaN 0 NaN NaN 0 11260000 51157 7110 31977 31994 0.06959774885581282 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 406.248486 810.48242 0.12982 5.274E-05 0.17076 6.9371E-05 0.30058 0.00012211 406.24854572824415 81.262 0.10275 84.947 84.893 84.996 3.685 0.034599 -0.00049649 NaN 0 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 53609 51158 7110 31977 31994 0.06959774885581282 VRRLQSLV 8 Unmodified _VRRLQSLV_ 0 0 0 REV__ENST00000552885.2_1_12:80328990-80329323:+|nuORF REV__ENST00000552885.2_1_12:80328990-80329323:+|nuORF MSMS UPN47_class_I_Rep_2 3 485.81158447265625 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 63.734 1 66.99 66.49 67.49 3.2556 0 0 0 0.40746 1 15136 15136 0.69038 0 1 + 51159 22973 31978 31995 58846 58846 0.12232861671009232 VRRLRLSVVH 10 Unmodified _VRRLRLSVVH_ 0 0 0 REV__L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|72|1|anti-sense REV__L1MA4A_dup659|chr2:108462863-108464675:-|1.2819515049865933|0.0800001650604259|4.0|151.0|72|1|anti-sense MSMS UPN48_class_I_Rep_2 6 617.8970947265625 2 617.89638 1233.77821 NaN NaN NaN NaN NaN NaN NaN 65.925 1 69.412 68.912 69.912 3.4866 0 0 0 0.53105 1 15022 15022 0.45834 0.057624 1 + 51160 25344 31979 31996 58847 58847 0.17066977673425754 VRRLRWAE 8 Unmodified _VRRLRWAE_ 0 0 0 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 REV__nc|ENSG00000126001|Q9BV73-2|CEP250 MSMS UPN46_class_I_Rep_3 1 543.036376953125 2 543.319974 1084.6254 NaN NaN NaN NaN NaN NaN NaN 83.767 1 83.767 83.267 84.267 0 0 0 0 0.40746 1 19909 19909 0.69038 0 1 + 51161 18853 31980 31997 58848 58848 0.08646782276787235 VRRLTPPL 8 Unmodified _VRRLTPPL_ 0 0 0 ENST00000475696.5_1_2:220110350-220111398:+|nuORF ENST00000475696.5_1_2:220110350-220111398:+|nuORF ENST00000475696.5_1_2:220110350-220111398:+|nuORF MSMS UPN46_class_I_Rep_3 1 476.3066101074219 2 476.308544 950.602535 NaN NaN NaN NaN NaN NaN NaN 85.761 1 85.761 85.261 86.261 0 0 0 0 0.40746 1 20476 20476 0.69038 0 1 51162 6959 31981 31998 58849 58849 0.12525763159328562 VRRNQTFC 8 Unmodified _VRRNQTFC_ 0 0 0 MLT1A0-int_dup723|chr12:26643305-26644371:+|1.527930251030568|0.0276188640901879|5.79|151.0|44|1|anti-sense MLT1A0-int_dup723|chr12:26643305-26644371:+|1.527930251030568|0.0276188640901879|5.79|151.0|44|1|anti-sense MLT1A0-int_dup723|chr12:26643305-26644371:+|1.527930251030568|0.0276188640901879|5.79|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_2 6 512.2620849609375 2 512.261268 1022.50798 NaN NaN NaN NaN NaN NaN NaN 73.294 1 76.872 76.372 77.372 3.5779 0 0 0 0.40746 1 17204 17204 0.69038 0 1 51163 16262 31982 31999 58850 58850 -0.0023711865430868784 VRRPRGKD 8 Unmodified _VRRPRGKD_ 0 0 0 ENST00000375377.1_1_10:30336542-30336710:-|nuORF ENST00000375377.1_1_10:30336542-30336710:-|nuORF ENST00000375377.1_1_10:30336542-30336710:-|nuORF MSMS UPN48_class_I_Rep_2 6 492.2968444824219 2 492.296499 982.578445 NaN NaN NaN NaN NaN NaN NaN 71.304 1 74.855 74.355 75.355 3.5505 0 0 0 0.40746 1 16627 16627 0.69038 0 1 51164 6442 31983 32000 58851 58851 0.08645922725656874 VRRPRKAYA 9 Unmodified _VRRPRKAYA_ 0 0 0 nc|ENSG00000171790|Q499Z3-4|SLFNL1;nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1 nc|ENSG00000171790|Q499Z3-4|SLFNL1 nc|ENSG00000171790|Q499Z3-4|SLFNL1 MSMS UPN46_class_I_Rep_3 1 558.83935546875 2 558.841074 1115.66759 NaN NaN NaN NaN NaN NaN NaN 94.274 1 94.274 93.774 94.774 0 0 0 0 0.4007 1 22868 22868 0.52476 0 1 51165 4546 31984 32001 58852 58852 0.11438757685186829 VRRPTWWL 8 Unmodified _VRRPTWWL_ 0 0 0 ENST00000581471.2_1_18:5238177-5238297:+|nuORF ENST00000581471.2_1_18:5238177-5238297:+|nuORF ENST00000581471.2_1_18:5238177-5238297:+|nuORF MSMS UPN47_class_I_Rep_2 3 557.3195190429688 2 557.319443 1112.62433 NaN NaN NaN NaN NaN NaN NaN 99.388 1 102.89 102.39 103.39 3.4974 0 0 0 0.40738 1 24334 24334 0.79363 0 1 51166 7560 31985 32002 58853 58853 0.07252567907880803 VRRQAPAA 8 Unmodified _VRRQAPAA_ 0 0 0 REV__ENST00000462554.2_2_20:60878367-60878463:+|nuORF REV__ENST00000462554.2_2_20:60878367-60878463:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 434.759033203125 2 434.759218 867.503883 -0.028552 -1.2413E-05 -0.2076 -9.0255E-05 -0.23615 -0.00010267 434.759106550754 78.357 0.78268 81.879 81.527 82.309 3.5221 187 97 3 0 0 0 0.82752 1 18638 18638 0.79363 0 1 561780 + 51167 22441 31986 32003 58854 58854 0.06483159914273529 VRRRFCGHG 9 Unmodified _VRRRFCGHG_ 0 0 0 ENST00000561780.5_2_16:69796232-69810092:+|nuORF;ENST00000359154.6_1_16:69796241-69820980:+|nuORF ENST00000561780.5_2_16:69796232-69810092:+|nuORF ENST00000561780.5_2_16:69796232-69810092:+|nuORF MSMS UPN47_class_I_Rep_1 2 544.2882690429688 2 544.288151 1086.56175 NaN NaN NaN NaN NaN NaN NaN 31.76 1 35.489 34.989 35.989 3.7293 0 0 0 0.4029 1 5374 5374 0 0 1 51168 6305 31987 32004 58855 58855 0.021930985680455706 VRRRGILF 8 Unmodified _VRRRGILF_ 0 0 0 REV__HERVIP10FH-int_dup360|chr19:57799729-57800140:-|1.7117940193867256|0.3406887706259994|2.33|151.0|26|2|anti-sense REV__HERVIP10FH-int_dup360|chr19:57799729-57800140:-|1.7117940193867256|0.3406887706259994|2.33|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_1 2 508.8277893066406 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 79.019 1 82.465 81.965 82.965 3.4456 0 0 0 0.40798 1 19668 19668 0 0 1 + 51169 23771 31988 32005 58856 58856 0.1331227414481191 VRRRGILF 8 Unmodified _VRRRGILF_ 0 0 0 REV__HERVIP10FH-int_dup360|chr19:57799729-57800140:-|1.7117940193867256|0.3406887706259994|2.33|151.0|26|2|anti-sense REV__HERVIP10FH-int_dup360|chr19:57799729-57800140:-|1.7117940193867256|0.3406887706259994|2.33|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_2 3 508.8277893066406 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 78.837 1 82.192 81.692 82.692 3.3554 0 0 0 0.40798 1 19598 19598 0 0 1 + 51170 23771 31988 32005 58857 58857 0.1331227414481191 VRRRGILF 8 Unmodified _VRRRGILF_ 0 0 0 REV__HERVIP10FH-int_dup360|chr19:57799729-57800140:-|1.7117940193867256|0.3406887706259994|2.33|151.0|26|2|anti-sense REV__HERVIP10FH-int_dup360|chr19:57799729-57800140:-|1.7117940193867256|0.3406887706259994|2.33|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_2 3 508.8273010253906 2 508.827435 1015.64032 NaN NaN NaN NaN NaN NaN NaN 89.775 1 93.232 92.732 93.732 3.4571 0 0 0 0.40798 1 22297 22297 0 0 1 + 51171 23771 31988 32005 58858 58858 0.1331227414481191 VRRRHRDR 8 Unmodified _VRRRHRDR_ 0 0 0 REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 575.8425903320312 2 575.842471 1149.67039 0.50375 0.00029008 0.67067 0.0003862 1.1744 0.00067628 575.8426487889583 83.979 0.46481 87.707 87.492 87.957 3.7281 69 53 2 0 0 0 0.82752 1 19882 19882 2.5775 0.27475 1 165790 + 51172 29934 31989 32006 58859 58859 0.10154025862675553 VRRRHRDR 8 Unmodified _VRRRHRDR_ 0 0 0 REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 575.842471 1149.67039 0.42679 0.00024576 0.96168 0.00055378 1.3885 0.00079954 575.8429218977429 84.106 0.75459 87.672 87.41 88.165 3.5655 -0.023585 0.00010412 NaN 2.5775 128 94 2 NaN NaN NaN NaN 0 NaN NaN 0 224480 + 51173 29934 31989 32006 0.10154025862675553 VRRRHRDR 8 Unmodified _VRRRHRDR_ 0 0 0 REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 575.842471 1149.67039 0.4201 0.00024191 0.83333 0.00047987 1.2534 0.00072178 575.8427897104172 84.054 0.13201 87.651 87.636 87.768 3.5973 -0.044168 -4.3699E-05 NaN 2.5775 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 119620 + 51174 29934 31989 32006 0.10154025862675553 VRRRHRDR 8 Unmodified _VRRRHRDR_ 0 0 0 REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense REV__L1PA6_dup5203|chr15:42246296-42252380:-|16.09041413577861|0.1958308077281479|6.36|151.0|135|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 575.842471 1149.67039 0.50375 0.00029008 0.67067 0.0003862 1.1744 0.00067628 575.8426487889583 83.979 0.46481 87.707 87.492 87.957 3.7281 0.011868 -0.00023103 NaN 2.5775 69 53 2 NaN NaN NaN NaN 0 NaN NaN 0 165790 + 51175 29934 31989 32006 0.10154025862675553 VRRRKAKLL 9 Unmodified _VRRRKAKLL_ 0 0 0 REV__nc|ENSG00000183337|Q6W2J9-4|BCOR REV__nc|ENSG00000183337|Q6W2J9-4|BCOR MSMS UPN48_class_I_Rep_1 5 570.3963623046875 2 570.396016 1138.77748 NaN NaN NaN NaN NaN NaN NaN 112.73 1 116.36 115.86 116.86 3.6321 0 0 0 0.4029 1 27362 27362 0 0 1 + 51176 20782 31990 32007 58860 58860 0.21364183024365957 VRRRKSSPLV 10 Unmodified _VRRRKSSPLV_ 0 0 0 REV__nc|ENSG00000292277|Q9UJ98-2|STAG3 REV__nc|ENSG00000292277|Q9UJ98-2|STAG3 MSMS UPN47_class_I_Rep_2 3 599.3802490234375 2 599.380563 1196.74657 NaN NaN NaN NaN NaN NaN NaN 95.754 1 99.229 98.729 99.729 3.4753 0 0 0 0.53105 1 23560 23560 0.40072 0 1 + 51177 17771 31991 32008 58861 58861 0.15606984919463684 VRRRRLPPR 9 Unmodified _VRRRRLPPR_ 0 0 0 REV__ENST00000357060.7_2_10:105990583-105992116:-|nuORF REV__ENST00000357060.7_2_10:105990583-105992116:-|nuORF MSMS UPN46_class_I_Rep_3 1 603.3955078125 2 603.394339 1204.77413 NaN NaN NaN NaN NaN NaN NaN 105.16 1 105.16 104.66 105.66 0 0 0 0 0.4029 1 25654 25654 0 0 1 + 51178 21873 31992 32009 58862 58862 0.17992932970355469 VRRRRLPPR 9 Unmodified _VRRRRLPPR_ 0 0 0 REV__ENST00000357060.7_2_10:105990583-105992116:-|nuORF REV__ENST00000357060.7_2_10:105990583-105992116:-|nuORF MSMS UPN47_class_I_Rep_3 4 603.3946533203125 2 603.394339 1204.77413 NaN NaN NaN NaN NaN NaN NaN 87.53 1 90.917 90.417 91.417 3.3873 0 0 0 0.4029 1 21935 21935 0 0 1 + 51179 21873 31992 32009 58863 58863 0.17992932970355469 VRRRRRLRGP 10 Unmodified _VRRRRRLRGP_ 0 0 0 ENST00000436427.1_3_1:43148660-43161876:+|nuORF ENST00000436427.1_3_1:43148660-43161876:+|nuORF ENST00000436427.1_3_1:43148660-43161876:+|nuORF MSMS UPN46_class_I_Rep_3 1 441.2974853515625 3 441.288589 1320.84394 NaN NaN NaN NaN NaN NaN NaN 28.992 1 28.992 28.492 29.492 0 0 0 0 0.53105 1 4531 4531 0.15932 0 1 51180 6755 31993 32010 58864 58864 0.19634811638957217 VRRRRRLRGP 10 Unmodified _VRRRRRLRGP_ 0 0 0 ENST00000436427.1_3_1:43148660-43161876:+|nuORF ENST00000436427.1_3_1:43148660-43161876:+|nuORF ENST00000436427.1_3_1:43148660-43161876:+|nuORF MSMS UPN48_class_I_Rep_2 6 441.297607421875 3 441.288589 1320.84394 NaN NaN NaN NaN NaN NaN NaN 113.23 1 116.89 116.39 117.39 3.6648 0 0 0 0.53105 1 27012 27012 0.15932 0 1 51181 6755 31993 32010 58865 58865 0.19634811638957217 VRRRRRRPGG 10 Unmodified _VRRRRRRPGG_ 0 0 0 nc|ENSG00000177602|Q8TF76-2|HASPIN;ENSG00000177602|ENST00000325418|HASPIN nc|ENSG00000177602|Q8TF76-2|HASPIN nc|ENSG00000177602|Q8TF76-2|HASPIN MSMS UPN46_class_I_Rep_3 1 633.3983154296875 2 633.397945 1264.78134 NaN NaN NaN NaN NaN NaN NaN 63.444 1 63.444 62.944 63.944 0 0 0 0 0.53105 1 14246 14246 0 0 1 51182 4799 31994 32011 58866 58866 0.15953665570782505 VRRSIQGV 8 Unmodified _VRRSIQGV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.H1852Afs*11|1|0.33|ENSG00000096433|chr6:33685708-33685709|-/G|frameshift_variant ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS UPN48_class_I_Rep_1 5 457.7799987792969 2 457.780151 913.545748 0.057319 2.6239E-05 0.28968 0.00013261 0.347 0.00015885 457.7801551306024 81.234 0.72682 84.797 84.442 85.168 3.5624 139 88 2 0 0 0 0.82752 1 19400 19400 2.0598 0 1 252460 51183 1426 31995 32012 58867 58867 0.08551715602823151 VRRSKRKC 8 Unmodified _VRRSKRKC_ 0 0 0 REV__L1MEg_dup962|chr1:222656301-222657575:-|1.3001610375580042|0.4468750548798843|1.54|151.0|13|1|sense REV__L1MEg_dup962|chr1:222656301-222657575:-|1.3001610375580042|0.4468750548798843|1.54|151.0|13|1|sense MSMS UPN47_class_I_Rep_3 4 516.8153686523438 2 516.814002 1031.61345 NaN NaN NaN NaN NaN NaN NaN 32.947 1 36.234 35.734 36.734 3.2867 0 0 0 0.40753 1 5816 5816 0.6015 0 1 + 51184 28790 31996 32013 58868 58868 0.09890842261961552 VRRSRRVIR 9 Unmodified _VRRSRRVIR_ 0 0 0 REV__ENST00000590966.1_1_17:68165072-68165375:-|nuORF REV__ENST00000590966.1_1_17:68165072-68165375:-|nuORF MSMS UPN48_class_I_Rep_1 5 599.3911743164062 2 599.391796 1196.76904 NaN NaN NaN NaN NaN NaN NaN 28.756 1 32.313 31.813 32.813 3.5571 0 0 0 0.40098 1 3896 3896 0.45834 0.057624 1 + 51185 23165 31997 32014 58869 58869 0.17852629107733264 VRRSRRVIR 9 Unmodified _VRRSRRVIR_ 0 0 0 REV__ENST00000590966.1_1_17:68165072-68165375:-|nuORF REV__ENST00000590966.1_1_17:68165072-68165375:-|nuORF MSMS UPN48_class_I_Rep_2 6 599.0850830078125 2 599.391796 1196.76904 NaN NaN NaN NaN NaN NaN NaN 28.866 1 32.497 31.997 32.997 3.6311 0 0 0 0.40098 1 4025 4025 0.45834 0.057624 1 + 51186 23165 31997 32014 58870 58870 0.17852629107733264 VRRSRRVIR 9 Unmodified _VRRSRRVIR_ 0 0 0 REV__ENST00000590966.1_1_17:68165072-68165375:-|nuORF REV__ENST00000590966.1_1_17:68165072-68165375:-|nuORF MSMS UPN48_class_I_Rep_3 7 599.3915405273438 2 599.391796 1196.76904 NaN NaN NaN NaN NaN NaN NaN 28.806 1 32.549 32.049 33.049 3.7424 0 0 0 0.40098 1 3966 3966 0.45834 0 1 + 51187 23165 31997 32014 58871 58871 0.17852629107733264 VRRVGIVTV 9 Unmodified _VRRVGIVTV_ 0 0 0 REV__MER117_dup2788|chr11:72960468-72960641:-|1.2357548846056012|0.0171054557962597|6.17|151.0|2|1|sense REV__MER117_dup2788|chr11:72960468-72960641:-|1.2357548846056012|0.0171054557962597|6.17|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 499.8271179199219 2 499.827101 997.639649 NaN NaN NaN NaN NaN NaN NaN 116.11 1 119.57 119.07 120.07 3.462 0 0 0 0.4029 1 28566 28566 0 0 1 + 51188 31079 31998 32015 58872 58872 0.14073434705107957 VRRVKRRN 8 Unmodified _VRRVKRRN_ 0 0 0 ENST00000514660.1_1_6:11306216-11306354:-|nuORF;ENST00000504634.5_1_6:11272051-11306354:-|nuORF;ENST00000513989.5_1_6:11251942-11306354:-|nuORF;ENST00000504387.5_1_6:11213937-11306354:-|nuORF;ENST00000459670.2_1_6:11305557-11306354:-|nuORF;ENST00000448183.6_1_6:11305366-11306354:-|nuORF ENST00000514660.1_1_6:11306216-11306354:-|nuORF ENST00000514660.1_1_6:11306216-11306354:-|nuORF MSMS UPN48_class_I_Rep_1 5 542.354248046875 2 542.35214 1082.68973 NaN NaN NaN NaN NaN NaN NaN 102.26 1 105.88 105.38 106.38 3.6164 0 0 0 0.40746 1 24666 24666 0.69038 0 1 51189 6798 31999 32016 58873 58873 0.15168982153613797 VRRVTNKL 8 Unmodified _VRRVTNKL_ 0 0 0 REV__L1ME3A_dup15171|chr20:48695979-48696601:-|1.309431008797216|0.0538093175163277|4.6|151.0|8|1|sense REV__L1ME3A_dup15171|chr20:48695979-48696601:-|1.309431008797216|0.0538093175163277|4.6|151.0|8|1|sense MSMS UPN48_class_I_Rep_1 5 493.3189392089844 2 493.3169 984.619247 NaN NaN NaN NaN NaN NaN NaN 71.01 1 74.476 73.976 74.976 3.466 0 0 0 0.40659 1 16576 16576 1.8442 0 1 + 51190 28004 32000 32017 58874 58874 0.12632264045282682 VRRVVPRY 8 Unmodified _VRRVVPRY_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MSMS UPN46_class_I_Rep_3 1 522.8340454101562 2 522.824892 1043.63523 NaN NaN NaN NaN NaN NaN NaN 56.09 1 56.09 55.59 56.59 0 0 0 0 0.40738 1 12219 12219 0.79363 0 1 51191 965 32001 32018 58875 58875 0.11515970282175658 VRRYYFYE 8 Unmodified _VRRYYFYE_ 0 0 0 REV__L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|158|2|anti-sense REV__L1M4_dup9704|chr9:41269958-41272958:+|1.544310767607012|0.3405167881932435|2.18|149.0|158|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.298828125 2 598.298373 1194.58219 NaN NaN NaN NaN NaN NaN NaN 96.111 1 99.875 99.375 100.38 3.7648 0 0 0 0.40746 1 23839 23839 0.69038 0.088878 1 + 51192 24468 32002 32019 58876 58876 -0.0073145229116562405 VRSFKDTK 8 Unmodified _VRSFKDTK_ 0 0 0 REV__L1MA3_dup1280|chr2:233430960-233432110:+|1.4538329507329617|0.0800600403389753|4.18|151.0|1|1|sense REV__L1MA3_dup1280|chr2:233430960-233432110:+|1.4538329507329617|0.0800600403389753|4.18|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 490.78265380859375 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 119.64 1 119.64 119.14 120.14 0 0 0 0 0.40625 1 29744 29744 2.3027 0 1 + 51193 24965 32003 32020 58877 58877 0.05448876163097793 VRSFLVPY 8 Unmodified _VRSFLVPY_ 0 0 0 L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|150|1|anti-sense L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|150|1|anti-sense L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|150|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7825622558594 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.06 1 115.58 115.08 116.08 3.5207 0 0 0 0.40625 1 27517 27517 2.3027 0 1 51194 9830 32004 32021 58878 58878 0.05850965656816243 VRSGCFYS 8 Unmodified _VRSGCFYS_ 0 0 0 REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 459.71063232421875 2 459.710545 917.406537 0.20152 9.2639E-05 0.040965 1.8832E-05 0.24248 0.00011147 459.7106170408596 96.606 1.3609 100.38 100.1 101.46 3.7767 433 186 3 0 0 0 0.82752 4 23917 23917;23945;24006;24035 4.756 0 1 9390200 + 51195 31713 32005 32022 58879;58880;58881;58882 58879 -0.05546990076879865 VRSGCFYS 8 Unmodified _VRSGCFYS_ 0 0 0 REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 459.71075439453125 2 459.710545 917.406537 0.13826 6.3559E-05 0.042172 1.9387E-05 0.18043 8.2946E-05 459.71062317639695 96.67 1.5357 100.15 99.681 101.22 3.4791 505 222 3 0 0 0 0.82752 2 23737 23737;23763 8.5933 0 1 9178400 + 51196 31713 32005 32022 58883;58884 58883 -0.05546990076879865 VRSGCFYS 8 Unmodified _VRSGCFYS_ 0 0 0 REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 459.710693359375 2 459.710545 917.406537 -0.075249 -3.4593E-05 0.22409 0.00010302 0.14885 6.8426E-05 459.7106994343619 96.862 1.6942 100.28 99.313 101.01 3.414 485 239 3 0 0 0 0.82752 2 23963 23963;24048 7.2892 0 1 9614400 + 51197 31713 32005 32022 58885;58886 58885 -0.05546990076879865 VRSGCFYS 8 Unmodified _VRSGCFYS_ 0 0 0 REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 459.710693359375 2 459.710545 917.406537 0.17787 8.1768E-05 0.18934 8.7043E-05 0.36721 0.00016881 459.71052939206857 96.388 0.98718 100.17 99.751 100.74 3.7804 339 130 3 0 0 0 0.82752 1 22936 22936 4.756 0 1 6441500 + 51198 31713 32005 32022 58887 58887 -0.05546990076879865 VRSGCFYS 8 Unmodified _VRSGCFYS_ 0 0 0 REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense REV__MLT1F1_dup236|chr2:3451946-3452463:-|1.1382637144821577|0.3655445111692748|1.64|151.0|28|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 459.7105407714844 2 459.710545 917.406537 0.18354 8.4374E-05 0.14308 6.5774E-05 0.32661 0.00015015 459.71052679571903 96.42 1.1705 100.33 99.861 101.03 3.9084 384 159 3 0 0 0 0.82752 3 22802 22802;22832;22893 4.756 0 1 6650600 + 51199 31713 32005 32022 58888;58889;58890 58888 -0.05546990076879865 VRSHKKGT 8 Unmodified _VRSHKKGT_ 0 0 0 L1PA16_dup11942|chr14:71099458-71100866:-|2.096616355534848|0.3254013813520821|2.69|151.0|36|3|sense L1PA16_dup11942|chr14:71099458-71100866:-|2.096616355534848|0.3254013813520821|2.69|151.0|36|3|sense L1PA16_dup11942|chr14:71099458-71100866:-|2.096616355534848|0.3254013813520821|2.69|151.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 456.34332275390625 2 456.772326 911.530098 NaN NaN NaN NaN NaN NaN NaN 81.815 1 81.815 81.315 82.315 0 0 0 0 0.40753 1 19343 19343 0.6015 0 1 51200 14035 32006 32023 58891 58891 0.07079429085752054 VRSPGGKL 8 Unmodified _VRSPGGKL_ 0 0 0 ENST00000265198.8_1_6:154567882-154587062:-|nuORF;ENST00000422970.6_1_6:154567882-154587062:-|nuORF;ENST00000519344.5_1_6:154567882-154568747:-|nuORF ENST00000265198.8_1_6:154567882-154587062:-|nuORF ENST00000265198.8_1_6:154567882-154587062:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 406.7756652832031 2 407.250695 812.486836 -0.014381 -5.8566E-06 1.3243 0.00053932 1.3099 0.00053347 407.25106581391753 17.059 0.12536 20.585 20.503 20.629 3.5261 23 15 2 0 0 0 0.72333 1 930 930 0 0 1 24393 51201 5995 32007 32024 58892 58892 0.07309239308483484 VRSPGGKL 8 Unmodified _VRSPGGKL_ 0 0 0 ENST00000265198.8_1_6:154567882-154587062:-|nuORF;ENST00000422970.6_1_6:154567882-154587062:-|nuORF;ENST00000519344.5_1_6:154567882-154568747:-|nuORF ENST00000265198.8_1_6:154567882-154587062:-|nuORF ENST00000265198.8_1_6:154567882-154587062:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 407.250695 812.486836 0.17959 7.3138E-05 1.1283 0.00045949 1.3079 0.00053263 407.25101871234386 16.76 0.32076 20.413 20.313 20.633 3.6527 -0.1722 3.4304E-05 NaN 0 61 43 2 NaN NaN NaN NaN 0 NaN NaN 0 19552 51202 5995 32007 32024 0.07309239308483484 VRSPKKEK 8 Unmodified _VRSPKKEK_ 0 0 0 REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|15|2|sense REV__L1MB7_dup1945|chr2:26113582-26114608:+|8.045037254319647|0.2937903993333884|4.78|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 486.3036193847656 2 486.303458 970.592364 NaN NaN NaN NaN NaN NaN NaN 78.778 1 82.313 81.813 82.813 3.5352 0 0 0 0.40659 1 18785 18785 1.8442 0 1 + 51203 26193 32008 32025 58893 58893 0.10589155434092845 VRSRGLRG 8 Unmodified _VRSRGLRG_ 0 0 0 HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|140|1|anti-sense HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|140|1|anti-sense HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|140|1|anti-sense MSMS UPN47_class_I_Rep_2 3 450.7767028808594 2 450.777942 899.541332 NaN NaN NaN NaN NaN NaN NaN 85.546 1 88.979 88.479 89.479 3.4329 0 0 0 0.40643 1 21284 21284 2.0598 0 1 51204 8415 32009 32026 58894 58894 0.08754251179902894 VRSRILVQ 8 Unmodified _VRSRILVQ_ 0 0 0 REV__ENST00000487465.5_1_3:10011273-10028351:-|nuORF REV__ENST00000487465.5_1_3:10011273-10028351:-|nuORF MSMS UPN47_class_I_Rep_3 4 485.8115234375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 97.443 1 100.86 100.36 101.36 3.4216 0 0 0 0.40746 1 24155 24155 0.69038 0 1 + 51205 22608 32010 32027 58895 58895 0.12232861671009232 VRSRKSLP 8 Unmodified _VRSRKSLP_ 0 0 0 L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.79547119140625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 38.781 1 42.16 41.66 42.66 3.3785 0 0 0 0.40604 1 7546 7546 2.5775 0 1 51206 10401 32011 32028 58896 58896 0.10392288636899139 VRSRKSLP 8 Unmodified _VRSRKSLP_ 0 0 0 L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7952575683594 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 38.93 1 42.309 41.809 42.809 3.3785 0 0 0 0.40604 1 7591 7591 2.5775 0 1 51207 10401 32011 32028 58897 58897 0.10392288636899139 VRSRKSLP 8 Unmodified _VRSRKSLP_ 0 0 0 L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7955017089844 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 39.109 1 42.487 41.987 42.987 3.3785 0 0 0 0.40604 1 7644 7644 2.5775 0 1 51208 10401 32011 32028 58898 58898 0.10392288636899139 VRSRKSLP 8 Unmodified _VRSRKSLP_ 0 0 0 L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense L1MB3_dup2298|chr2:135192494-135193849:+|1.4920812034838862|0.1512048545243176|3.3|151.0|89|3|anti-sense MSMS UPN47_class_I_Rep_3 4 471.79473876953125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 43.622 1 46.864 46.364 47.364 3.2419 0 0 0 0.40625 1 9069 9069 2.3027 0 1 51209 10401 32011 32028 58899 58899 0.10392288636899139 VRSRLLLL 8 Unmodified _VRSRLLLL_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MSMS UPN48_class_I_Rep_2 6 485.33294677734375 2 485.332019 968.649485 NaN NaN NaN NaN NaN NaN NaN 59.99 1 63.476 62.976 63.976 3.4868 0 0 0 0.40738 1 13208 13208 0.79363 0 1 51210 4928 32012 32029 58900 58900 0.16390622710491698 VRSRRWKV 8 Unmodified _VRSRRWKV_ 0 0 0 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 MSMS UPN47_class_I_Rep_1 2 543.8361206054688 2 543.835791 1085.65703 NaN NaN NaN NaN NaN NaN NaN 13.77 1 17.226 16.726 17.726 3.457 0 0 0 0.40643 1 409 409 2.0598 0.21551 1 51211 4195 32013 32030 58901 58901 0.11762775030729244 VRSTTWLLK 9 Unmodified _VRSTTWLLK_ 0 0 0 REV__ENSG00000168036|ENST00000349496|CTNNB1 REV__ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS UPN48_class_I_Rep_3 7 552.3323974609375 2 552.332216 1102.64988 0.28126 0.00015535 0.78783 0.00043514 1.0691 0.00059049 552.3322235081686 50.282 0.9868 53.903 53.358 54.345 3.621 111 61 3 0 0 0 0.279 1 10170 10170 15.248 1.3424 1 440720 + 51212 20256 32014 32031 58902 58902 0.10265997639658053 VRSWDWDH 8 Unmodified _VRSWDWDH_ 0 0 0 ENST00000231368.9_1_5:96271240-96271516:+|nuORF ENST00000231368.9_1_5:96271240-96271516:+|nuORF ENST00000231368.9_1_5:96271240-96271516:+|nuORF MSMS UPN48_class_I_Rep_1 5 550.7481689453125 2 550.749047 1099.48354 NaN NaN NaN NaN NaN NaN NaN 40.894 1 44.4 43.9 44.9 3.506 0 0 0 0.40625 1 7389 7389 2.3027 0 1 51213 5885 32015 32032 58903 58903 -0.06222055536204607 VRTKKKKK 8 Unmodified _VRTKKKKK_ 0 0 0 L1ME1_dup25143|chr14:89525645-89526992:+|1.6822142848095654|0.009564324741754|7.46|150.0|36|3|sense REV__L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|9|1|sense REV__L1PREC2_dup450|chr1:211961729-211965949:+|2.5614737006284285|0.121445950873469|4.4|151.0|9|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 508.2115478515625 2 508.358568 1014.70258 0.2852 0.00014498 -2.2655 -0.0011517 -1.9803 -0.0010067 508.35753369655083 75.101 0.076347 75.101 75.048 75.124 0 11 8 2 0 0 0 0.72333 1 17438 17438 0.79363 0 1 84687 51214 12327 32016 32033 58904 58904 0.19582000493119267 VRTPGLWR 8 Unmodified _VRTPGLWR_ 0 0 0 ENST00000528669.5_1_14:24664470-24664551:-|nuORF ENST00000528669.5_1_14:24664470-24664551:-|nuORF ENST00000528669.5_1_14:24664470-24664551:-|nuORF MSMS UPN48_class_I_Rep_1 5 492.7911682128906 2 492.790518 983.566484 NaN NaN NaN NaN NaN NaN NaN 75.9 1 79.4 78.9 79.9 3.4996 0 0 0 0.40746 1 18010 18010 0.69038 0 1 51215 7279 32017 32034 58905 58905 0.07404305982470305 VRTRISNPF 9 Unmodified _VRTRISNPF_ 0 0 0 L1MB7_dup19224|chr16:68174901-68175447:+|1.2284894469982497|0.0220856233587868|5.8|151.0|34|2|anti-sense L1MB7_dup19224|chr16:68174901-68175447:+|1.2284894469982497|0.0220856233587868|5.8|151.0|34|2|anti-sense L1MB7_dup19224|chr16:68174901-68175447:+|1.2284894469982497|0.0220856233587868|5.8|151.0|34|2|anti-sense MSMS UPN48_class_I_Rep_2 6 545.3106689453125 2 545.311815 1088.60908 NaN NaN NaN NaN NaN NaN NaN 73.177 1 76.742 76.242 77.242 3.5645 0 0 0 0.38639 1 17172 17172 3.9444 0 1 51216 10769 32018 32035 58906 58906 0.06831656320036927 VRTTPLKR 8 Unmodified _VRTTPLKR_ 0 0 0 REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.81182861328125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.632 1 71.997 71.497 72.497 3.3646 0 0 0 0.40746 1 16582 16582 0.69038 0 1 + 51217 21990 32019 32036 58907 58907 0.12232861670997863 VRTTPLKR 8 Unmodified _VRTTPLKR_ 0 0 0 REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.8120422363281 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 70.773 1 74.144 73.644 74.644 3.3713 0 0 0 0.40753 1 17218 17218 0.6015 0 1 + 51218 21990 32019 32036 58908 58908 0.12232861670997863 VRTTPLKR 8 Unmodified _VRTTPLKR_ 0 0 0 REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 485.81182861328125 2 485.811451 969.608348 0.1036 5.0332E-05 0.89436 0.00043449 0.99797 0.00048482 485.8116408870915 68.664 0.20409 72.028 71.992 72.196 3.3646 19 15 2 0 0 0 0.72333 1 16582 16582 0.69038 0 1 513490 + 51219 21990 32019 32036 58909 58909 0.12232861670997863 VRTTPLKR 8 Unmodified _VRTTPLKR_ 0 0 0 REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 485.811451 969.608348 0.18873 9.1686E-05 3.528 0.001714 3.7167 0.0018056 485.8117730164481 68.461 0.040115 71.912 71.889 71.929 3.4517 -0.0058693 0.0018332 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 53745 + 51220 21990 32019 32036 0.12232861670997863 VRTVSKRE 8 Unmodified _VRTVSKRE_ 0 0 0 ENST00000600534.1_1_19:59085324-59085477:+|nuORF ENST00000600534.1_1_19:59085324-59085477:+|nuORF ENST00000600534.1_1_19:59085324-59085477:+|nuORF MSMS UPN48_class_I_Rep_1 5 487.7906494140625 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 73.055 1 76.536 76.036 77.036 3.4812 0 0 0 0.40659 1 17190 17190 1.8442 0 1 51221 7661 32020 32037 58910 58910 0.07903680911658739 VRTWWPQL 8 Unmodified _VRTWWPQL_ 0 0 0 ENST00000561704.1_1_16:66914448-66914508:+|nuORF ENST00000561704.1_1_16:66914448-66914508:+|nuORF ENST00000561704.1_1_16:66914448-66914508:+|nuORF MSMS UPN48_class_I_Rep_1 5 543.2982177734375 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 27.958 1 31.515 31.015 32.015 3.5571 0 0 0 0.40643 1 3675 3675 2.0598 0 1 51222 7462 32021 32038 58911 58911 0.042891727796586565 VRVCLQRLGR 10 Unmodified _VRVCLQRLGR_ 0 0 0 nc|ENSG00000196642|Q3YEC7-3|RABL6 nc|ENSG00000196642|Q3YEC7-3|RABL6 nc|ENSG00000196642|Q3YEC7-3|RABL6 MSMS UPN48_class_I_Rep_1 5 600.3612060546875 2 600.361316 1198.70808 NaN NaN NaN NaN NaN NaN NaN 29.133 1 32.683 32.183 33.183 3.5499 0 0 0 0.53105 1 4004 4004 0 0 1 51223 16794 32022 32039 58912 58912 0.11667356013253993 VRVDPLDGPG 10 Unmodified _VRVDPLDGPG_ 0 0 0 ENST00000420652.5_1_16:66958729-66959321:-|nuORF ENST00000420652.5_1_16:66958729-66959321:-|nuORF ENST00000420652.5_1_16:66958729-66959321:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 512.7750244140625 2 512.774731 1023.53491 -0.16861 -8.6458E-05 0.053038 2.7196E-05 -0.11557 -5.9262E-05 512.7747340828208 37.65 0.59702 41.315 41.065 41.662 3.6652 87 43 3 0 0 0 0.52562 1 7127 7127 8.7454 0.58988 1 182230 51224 6680 32023 32040 58913 58913 0.024082684378640806 VRVDPLDGPG 10 Unmodified _VRVDPLDGPG_ 0 0 0 ENST00000420652.5_1_16:66958729-66959321:-|nuORF ENST00000420652.5_1_16:66958729-66959321:-|nuORF ENST00000420652.5_1_16:66958729-66959321:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 512.7744140625 2 512.774731 1023.53491 -0.28517 -0.00014623 0.028671 1.4702E-05 -0.2565 -0.00013153 512.7746317139869 37.901 0.63683 41.288 41.01 41.647 3.3879 103 49 3 0 0 0 0.54822 1 7344 7344 5.7319 0 1 162410 51225 6680 32023 32040 58914 58914 0.024082684378640806 VRVGFSFVCS 10 Unmodified _VRVGFSFVCS_ 0 0 0 L1PA13_dup4692|chr9:92444701-92445468:-|1.5517911301733034|0.0070240642038966|7.79|151.0|37|2|anti-sense L1PA13_dup4692|chr9:92444701-92445468:-|1.5517911301733034|0.0070240642038966|7.79|151.0|37|2|anti-sense L1PA13_dup4692|chr9:92444701-92445468:-|1.5517911301733034|0.0070240642038966|7.79|151.0|37|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 550.27734375 2 550.781502 1099.54845 0.40235 0.00022161 0.11921 6.5657E-05 0.52156 0.00028727 551.2810744879687 94.91 0.042969 94.91 94.884 94.927 0 5 3 2 0 0 0 0.84575 1 23033 23033 1.4819 0 1 92567 51226 13757 32024 32041 58915 58915 0.0026580294545510696 VRVINFIK 8 Unmodified _VRVINFIK_ 0 0 0 ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C MSMS UPN46_class_I_Rep_3 1 494.8205871582031 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 22.556 1 22.556 22.056 23.056 0 0 0 0 0.40746 1 2698 2698 0.69038 0 1 51227 5645 32025 32042 58916 58916 0.12862933819144473 VRVKGGGH 8 Unmodified _VRVKGGGH_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS UPN47_class_I_Rep_3 4 405.240478515625 2 405.240661 808.46677 -0.65274 -0.00026452 0.65399 0.00026502 0.0012492 5.0624E-07 405.240925574292 77.316 0.19053 80.585 80.535 80.725 3.269 23 18 2 0 0 0 0.82752 1 19266 19266 0 0 1 72317 51228 1719 32026 32043 58917 58917 0.05487488368532922 VRVKGGGH 8 Unmodified _VRVKGGGH_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS UPN48_class_I_Rep_1 5 405.2405700683594 2 405.240661 808.46677 -0.11226 -4.5493E-05 0.10217 4.1402E-05 -0.010096 -4.0915E-06 405.2405882606566 77.236 0.18284 80.746 80.61 80.793 3.5102 19 14 2 0 0 0 0.82752 1 18355 18355 0 0 1 61874 51229 1719 32026 32043 58918 58918 0.05487488368532922 VRVKQNRT 8 Unmodified _VRVKQNRT_ 0 0 0 LTR2B_dup278|chr17:28893595-28894064:+|1.2593445444303288|0.2156371234742908|2.55|151.0|23|1|anti-sense;LTR2B_dup277|chr17:21142021-21142497:-|1.4336413402523047|0.015818966287697|6.5|151.0|33|3|anti-sense LTR2B_dup278|chr17:28893595-28894064:+|1.2593445444303288|0.2156371234742908|2.55|151.0|23|1|anti-sense LTR2B_dup278|chr17:28893595-28894064:+|1.2593445444303288|0.2156371234742908|2.55|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 500.806396484375 2 500.804157 999.593761 NaN NaN NaN NaN NaN NaN NaN 115.44 1 119.08 118.58 119.58 3.6433 0 0 0 0.40643 1 27465 27465 2.0598 0 1 51230 15613 32027 32044 58919 58919 0.09394789522855262 VRVKRKRG 8 Unmodified _VRVKRKRG_ 0 0 0 REV__MER34_dup978|chr12:76516113-76516476:+|1.3487268338124114|0.0041853931436309|8.33|151.0|19|1|anti-sense REV__MER34_dup978|chr12:76516113-76516476:+|1.3487268338124114|0.0041853931436309|8.33|151.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 499.8269348144531 2 499.838334 997.662115 NaN NaN NaN NaN NaN NaN NaN 16.581 1 20.103 19.603 20.603 3.5224 0 0 0 0.40798 1 1087 1087 0 0 1 + 51231 31265 32028 32045 58920 58920 0.16319078893377537 VRVLRQIS 8 Unmodified _VRVLRQIS_ 0 0 0 nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC nc|ENSG00000136997|P01106-1|MYC nc|ENSG00000136997|P01106-1|MYC MSMS UPN47_class_I_Rep_2 3 485.8109436035156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 22.53 1 25.975 25.475 26.475 3.4447 0 0 0 0.40625 1 2690 2690 2.3027 0 1 51232 3003 32029 32046 58921 58921 0.12232861670997863 VRVMFGRRP 9 Unmodified _VRVMFGRRP_ 0 0 0 ENST00000258874.3_1_15:80137691-80181470:-|nuORF ENST00000258874.3_1_15:80137691-80181470:-|nuORF ENST00000258874.3_1_15:80137691-80181470:-|nuORF MSMS UPN47_class_I_Rep_1 2 559.3244018554688 2 559.324202 1116.63385 NaN NaN NaN NaN NaN NaN NaN 117.32 1 120.93 120.43 121.43 3.6036 0 0 0 0.4029 1 29083 29083 0 0 1 51233 5941 32030 32047 58922 58922 0.0802001292179284 VRVPFALC 8 Unmodified _VRVPFALC_ 0 0 0 ENSG00000047188.16,YTHDC2,chr5,+,I24.1,113567850,113579585|27|6.7|2|intron ENSG00000047188.16,YTHDC2,chr5,+,I24.1,113567850,113579585|27|6.7|2|intron ENSG00000047188.16,YTHDC2,chr5,+,I24.1,113567850,113579585|27|6.7|2|intron MSMS UPN47_class_I_Rep_2 3 452.7569885253906 2 452.757298 903.500044 NaN NaN NaN NaN NaN NaN NaN 19.892 1 23.288 22.788 23.788 3.3963 0 0 0 0.40746 1 1964 1964 0.69038 0 1 51234 881 32031 32048 58923 58923 0.044433540962018014 VRVPKGLV 8 Unmodified _VRVPKGLV_ 0 0 0 REV__ENST00000415279.1_1_1:106435599-106436040:+|nuORF REV__ENST00000415279.1_1_1:106435599-106436040:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 434.29217529296875 2 434.292362 866.570172 -0.45171 -0.00019617 0.21672 9.412E-05 -0.23499 -0.00010205 434.292372367452 62.719 0.37658 65.889 65.717 66.093 3.1698 27 18 2 0 0 0 0.82752 1 14875 14875 0.69038 0 1 301970 + 51235 22216 32032 32049 58924 58924 0.13154975756333442 VRVPKGLV 8 Unmodified _VRVPKGLV_ 0 0 0 REV__ENST00000415279.1_1_1:106435599-106436040:+|nuORF REV__ENST00000415279.1_1_1:106435599-106436040:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 434.292362 866.570172 -0.39034 -0.00016952 -0.057767 -2.5088E-05 -0.44811 -0.00019461 434.2923300614435 62.701 0.12585 65.957 65.925 66.051 3.2558 0.06029 -0.00010399 NaN 0.69038 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 206400 + 51236 22216 32032 32049 0.13154975756333442 VRVPKGLV 8 Unmodified _VRVPKGLV_ 0 0 0 REV__ENST00000415279.1_1_1:106435599-106436040:+|nuORF REV__ENST00000415279.1_1_1:106435599-106436040:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 434.292362 866.570172 -0.45171 -0.00019617 0.21672 9.412E-05 -0.23499 -0.00010205 434.292372367452 62.719 0.37658 65.889 65.717 66.093 3.1698 -0.007844 0.00013443 NaN 0.69038 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 301970 + 51237 22216 32032 32049 0.13154975756333442 VRVPKVGKL 9 Unmodified _VRVPKVGKL_ 0 0 0 MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.3403625488281 2 498.339844 994.665135 0.12741 6.3493E-05 0.43832 0.00021843 0.56573 0.00028192 498.34002832563226 33.608 0.074902 33.608 33.595 33.67 0 5 4 2 0 0 0 0.50582 1 5906 5906 0 0 1 263270 51238 16501 32033 32050 58925 58925 0.16758909227519325 VRVPKVGKL 9 Unmodified _VRVPKVGKL_ 0 0 0 MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 498.3398132324219 2 498.339844 994.665135 0.18384 9.1616E-05 0.37054 0.00018465 0.55438 0.00027627 498.3401389601375 36.166 0.1014 36.166 36.107 36.209 0 13 7 3 0 0 0 0.50582 1 6667 6667 0 0 1 165340 51239 16501 32033 32050 58926 58926 0.16758909227519325 VRVPKVGKL 9 Unmodified _VRVPKVGKL_ 0 0 0 MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 498.34051513671875 2 498.339844 994.665135 NaN NaN NaN NaN NaN NaN NaN 32.199 1 32.199 31.699 32.699 0 0 0 0 0.4029 1 5479 5479 0 0 1 51240 16501 32033 32050 58927 58927 0.16758909227519325 VRVPKVGKL 9 Unmodified _VRVPKVGKL_ 0 0 0 MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MLT2A2_dup2591|chr10:43146032-43146584:-|1.4064792688812242|0.0285787380746106|5.62|151.0|24|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 498.78118896484375 2 498.339844 994.665135 0.13693 6.8238E-05 0.34817 0.00017351 0.4851 0.00024174 498.3402023024533 34.035 0.04187 34.035 34.013 34.055 0 4 2 2 0 0 0 0.12551 1 6027 6027 0 0 1 75529 51241 16501 32033 32050 58928 58928 0.16758909227519325 VRVPLALH 8 Unmodified _VRVPLALH_ 0 0 0 ENST00000390665.8_1_X:306258-308059:-|nuORF ENST00000390665.8_1_X:306258-308059:-|nuORF ENST00000390665.8_1_X:306258-308059:-|nuORF MSMS UPN47_class_I_Rep_2 3 452.7914123535156 2 452.789987 903.565421 NaN NaN NaN NaN NaN NaN NaN 111.78 1 115.3 114.8 115.8 3.5226 0 0 0 0.40746 1 27216 27216 0.69038 0 1 51242 6515 32034 32051 58929 58929 0.10978091613560537 VRVRLHLK 8 Unmodified _VRVRLHLK_ 0 0 0 AluSz_dup66431|chr12:27005805-27006098:-|1.2387979521843986|0.0381483570306165|5.02|151.0|5|1|sense AluSz_dup66431|chr12:27005805-27006098:-|1.2387979521843986|0.0381483570306165|5.02|151.0|5|1|sense AluSz_dup66431|chr12:27005805-27006098:-|1.2387979521843986|0.0381483570306165|5.02|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 510.7577209472656 2 510.843085 1019.67162 NaN NaN NaN NaN NaN NaN NaN 30.274 1 33.909 33.409 34.409 3.6351 0 0 0 0.40746 1 4407 4407 0.69038 0 1 51243 359 32035 32052 58930 58930 0.16256847178885891 VRVRLHLKKK 10 Unmodified _VRVRLHLKKK_ 0 0 0 AluSz_dup66431|chr12:27005805-27006098:-|1.2387979521843986|0.0381483570306165|5.02|151.0|5|1|sense AluSz_dup66431|chr12:27005805-27006098:-|1.2387979521843986|0.0381483570306165|5.02|151.0|5|1|sense AluSz_dup66431|chr12:27005805-27006098:-|1.2387979521843986|0.0381483570306165|5.02|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 426.29449462890625 3 426.294458 1275.86154 NaN NaN NaN NaN NaN NaN NaN 70.049 1 73.421 72.921 73.921 3.3713 0 0 0 0.53105 1 17007 17007 0.15932 0 1 51244 359 32036 32053 58931 58931 0.23464714121246288 VRVRLRLKK 9 Unmodified _VRVRLRLKK_ 0 0 0 AluSx_dup91179|chr16:18786126-18786367:+|1.8547123251645836|0.0045621159872568|8.67|151.0|7|3|sense;AluSq2_dup35963|chr10:87953948-87954234:+|1.024652142490908|0.2064600274848817|2.31|151.0|7|2|sense AluSx_dup91179|chr16:18786126-18786367:+|1.8547123251645836|0.0045621159872568|8.67|151.0|7|3|sense AluSx_dup91179|chr16:18786126-18786367:+|1.8547123251645836|0.0045621159872568|8.67|151.0|7|3|sense MSMS UPN48_class_I_Rep_3 7 584.4131469726562 2 584.411666 1166.80878 NaN NaN NaN NaN NaN NaN NaN 72.841 1 76.378 75.878 76.878 3.5373 0 0 0 0.4007 1 17007 17007 0.52476 0.12405 1 51245 255 32037 32054 58932 58932 0.23204756058430576 VRVRRELE 8 Unmodified _VRVRRELE_ 0 0 0 ENST00000591316.1_1_1:16804748-16809819:-|nuORF;nc|ENSG00000290842|Q8IVE0|CROCCP3;ENST00000591348.5_1_1:16802327-16812083:-|nuORF ENST00000591316.1_1_1:16804748-16809819:-|nuORF ENST00000591316.1_1_1:16804748-16809819:-|nuORF MSMS UPN47_class_I_Rep_3 4 528.817138671875 2 528.817264 1055.61998 NaN NaN NaN NaN NaN NaN NaN 89.92 1 93.318 92.818 93.818 3.3976 0 0 0 0.40746 1 22544 22544 0.69038 0 1 51246 7620 32038 32055 58933 58933 0.09439058694306368 VRVRYYYV 8 Unmodified _VRVRYYYV_ 0 0 0 REV__L1MA3_dup1680|chr3:114916474-114919066:-|1.0036142378960498|0.0248498428486025|5.34|150.0|147|3|anti-sense REV__L1MA3_dup1680|chr3:114916474-114919066:-|1.0036142378960498|0.0248498428486025|5.34|150.0|147|3|anti-sense MSMS UPN47_class_I_Rep_1 2 559.3109741210938 2 559.311284 1116.60801 NaN NaN NaN NaN NaN NaN NaN 23.444 1 27.148 26.648 27.648 3.7042 0 0 0 0.40738 1 2897 2897 0.79363 0 1 + 51247 24981 32039 32056 58934 58934 0.054374419511077576 VRVSEGLIINL 11 Unmodified _VRVSEGLIINL_ 0 0 0 REV__MLT2B4_dup2215|chr8:27372224-27372671:-|1.5775714030135537|0.0070704654875335|7.8|151.0|7|2|sense REV__MLT2B4_dup2215|chr8:27372224-27372671:-|1.5775714030135537|0.0070704654875335|7.8|151.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.8693237304688 2 606.869163 1211.72377 0.48832 0.00029635 0.10957 6.6494E-05 0.59789 0.00036284 606.8691697424446 107.99 0.11688 111.66 111.59 111.71 3.6746 18 10 2 0 0 0 0.68583 1 25572 25572 0 0 1 2408000 + 51248 31826 32040 32057 58935 58935 0.12637921011355502 VRVSGGLRF 9 Unmodified _VRVSGGLRF_ 0 0 0 ENST00000527037.5_1_11:117090171-117090489:-|nuORF ENST00000527037.5_1_11:117090171-117090489:-|nuORF ENST00000527037.5_1_11:117090171-117090489:-|nuORF MSMS UPN47_class_I_Rep_2 3 495.79632568359375 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 80.298 1 83.667 83.167 84.167 3.3694 0 0 0 0.4029 1 20001 20001 0 0 1 51249 7266 32041 32058 58936 58936 0.08184288636914516 VRVSGGLRF 9 Unmodified _VRVSGGLRF_ 0 0 0 ENST00000527037.5_1_11:117090171-117090489:-|nuORF ENST00000527037.5_1_11:117090171-117090489:-|nuORF ENST00000527037.5_1_11:117090171-117090489:-|nuORF MSMS UPN47_class_I_Rep_3 4 495.7961730957031 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 49.252 1 52.486 51.986 52.986 3.2345 0 0 0 0.4029 1 10780 10780 0 0 1 51250 7266 32041 32058 58937 58937 0.08184288636914516 VRVSILDHSC 10 Unmodified _VRVSILDHSC_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|343|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|343|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|343|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.7963256835938 2 564.79514 1127.57573 NaN NaN NaN NaN NaN NaN NaN 24.734 1 28.3 27.8 28.8 3.5667 0 0 0 0.53105 1 2773 2773 1.6526 0 1 51251 14691 32042 32059 58938 58938 0.01704286485846751 VRVSKGKKK 9 Unmodified _VRVSKGKKK_ 0 0 0 HAL1_dup1689|chr1:229337731-229338409:+|1.5091555241651209|0.0528151155263712|4.84|151.0|1|1|sense HAL1_dup1689|chr1:229337731-229338409:+|1.5091555241651209|0.0528151155263712|4.84|151.0|1|1|sense HAL1_dup1689|chr1:229337731-229338409:+|1.5091555241651209|0.0528151155263712|4.84|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 515.3485717773438 2 515.3482 1028.68185 NaN NaN NaN NaN NaN NaN NaN 40.145 1 43.796 43.296 44.296 3.6509 0 0 0 0.4029 1 7104 7104 0 0 1 51252 7827 32043 32060 58939 58939 0.16865410113473445 VRVTEAGTRL 10 Unmodified _VRVTEAGTRL_ 0 0 0 L1MB3_dup15709|chr19:4946007-4946576:-|1.0337100255063454|0.0114962732207983|6.49|150.0|12|3|sense L1MB3_dup15709|chr19:4946007-4946576:-|1.0337100255063454|0.0114962732207983|6.49|150.0|12|3|sense L1MB3_dup15709|chr19:4946007-4946576:-|1.0337100255063454|0.0114962732207983|6.49|150.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 551.3221435546875 2 551.32238 1100.63021 NaN NaN NaN NaN NaN NaN NaN 25.602 1 25.602 25.102 26.102 0 0 0 0 0.53105 1 3536 3536 1.1933 0.23107 1 51253 10360 32044 32061 58940 58940 0.08391621628902612 VRVVRNSL 8 Unmodified _VRVVRNSL_ 0 0 0 REV__LACTB2|p.E169Gfs*7|1|0.09|ENSG00000147592|chr8:70644151-70644152|-/C|frameshift_variant REV__LACTB2|p.E169Gfs*7|1|0.09|ENSG00000147592|chr8:70644151-70644152|-/C|frameshift_variant MSMS UPN48_class_I_Rep_1 5 471.784423828125 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 47.122 1 50.643 50.143 51.143 3.5207 0 0 0 0.40643 1 9277 9277 2.0598 0 1 + 51254 19572 32045 32062 58941 58941 0.10392288636899139 VRVYLWAL 8 Unmodified _VRVYLWAL_ 0 0 0 L1MB2_dup3598|chr7:100364132-100364382:+|1.0264913184086149|0.4571944947276559|1.17|151.0|11|1|anti-sense L1MB2_dup3598|chr7:100364132-100364382:+|1.0264913184086149|0.4571944947276559|1.17|151.0|11|1|anti-sense L1MB2_dup3598|chr7:100364132-100364382:+|1.0264913184086149|0.4571944947276559|1.17|151.0|11|1|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7764892578125 2 510.30547 1018.59639 NaN NaN NaN NaN NaN NaN NaN 65.23 1 68.586 68.086 69.086 3.3557 0 0 0 0.40738 1 15545 15545 0.79363 0 1 51255 10233 32046 32063 58942 58942 0.08783244927781197 VRWGLVASY 9 Unmodified _VRWGLVASY_ 0 0 0 REV__L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|239|2|anti-sense REV__L1PREC2_dup1700|chr4:17982146-17986779:-|4.410988242216774|0.0416057135887877|6.73|151.0|239|2|anti-sense MSMS UPN48_class_I_Rep_1 5 525.7910766601562 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 27.057 1 30.62 30.12 31.12 3.5629 0 0 0 0.39518 1 3424 3424 1.8442 0 1 + 51256 29123 32047 32064 58943 58943 0.04301466542779053 VRWLFMFF 8 Unmodified _VRWLFMFF_ 0 0 0 Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|10|1|sense Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|10|1|sense Cheshire_dup1008|chr20:2906421-2908275:-|1.687046465180252|0.0148609438800391|6.83|151.0|10|1|sense MSMS UPN48_class_I_Rep_3 7 573.3023071289062 2 573.301873 1144.58919 NaN NaN NaN NaN NaN NaN NaN 78.542 1 82.163 81.663 82.663 3.6216 0 0 0 0.40746 1 18595 18595 0.69038 0 1 51257 544 32048 32065 58944 58944 0.022681890557350926 VRWMKVTL 8 Unmodified _VRWMKVTL_ 0 0 0 REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF MSMS UPN48_class_I_Rep_1 5 516.8064575195312 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 41.149 1 44.655 44.155 45.155 3.506 0 0 0 0.40157 1 7466 7466 7.2892 0.56607 1 + 51258 20685 32049 32066 58945 58945 0.08047287567387684 VRWMKVTL 8 Unmodified _VRWMKVTL_ 0 0 0 REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF MSMS UPN48_class_I_Rep_3 7 516.8056640625 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 40.938 1 44.588 44.088 45.088 3.6509 0 0 0 0.4044 1 7338 7338 4.756 0 1 + 51259 20685 32049 32066 58946 58946 0.08047287567387684 VRWMKVTL 8 Unmodified _VRWMKVTL_ 0 0 0 REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF MSMS UPN48_class_I_Rep_3 7 516.8046875 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 41.169 1 44.815 44.315 45.315 3.6458 0 0 0 0.40157 1 7407 7407 7.2892 1.9923 1 + 51260 20685 32049 32066 58947 58947 0.08047287567387684 VRWMKVTL 8 Unmodified _VRWMKVTL_ 0 0 0 REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF REV__ENST00000533108.1_1_8:145164641-145165891:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 516.806640625 2 516.80478 1031.59501 0.26585 0.00013739 1.7732 0.00091639 2.039 0.0010538 516.8057184676894 41.047 0.13515 44.692 44.634 44.769 3.6458 13 12 2 0 0 0 0.72333 1 7381 7381 11.64 0.81637 1 72566 + 51261 20685 32049 32066 58948 58948 0.08047287567387684 VRWRAKGA 8 Unmodified _VRWRAKGA_ 0 0 0 REV__L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|15|2|sense REV__L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 472.27813720703125 2 472.28286 942.551168 NaN NaN NaN NaN NaN NaN NaN 17.704 1 17.704 17.204 18.204 0 0 0 0 0.40746 1 1432 1432 0.69038 0 1 + 51262 24996 32050 32067 58949 58949 0.07759439185269912 VRWRQTFL 8 Unmodified _VRWRQTFL_ 0 0 0 REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF MSMS UPN47_class_I_Rep_3 4 553.316650390625 2 553.3169 1104.61925 NaN NaN NaN NaN NaN NaN NaN 66.376 1 69.562 69.062 70.062 3.1853 0 0 0 0.40746 1 16005 16005 0.69038 0 1 + 51263 19985 32051 32068 58950 58950 0.07112264045258598 VRWRYYAY 8 Unmodified _VRWRYYAY_ 0 0 0 L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|89|2|anti-sense L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|89|2|anti-sense L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_1 5 588.799072265625 2 588.801083 1175.58761 NaN NaN NaN NaN NaN NaN NaN 115.88 1 119.51 119.01 120.01 3.6282 0 0 0 0.40738 1 28204 28204 0.79363 0.19213 1 51264 9014 32052 32069 58951 58951 0.0068427129131123365 VRWYLIVVF 9 Unmodified _VRWYLIVVF_ 0 0 0 L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|182|3|anti-sense;L1PA7_dup288|chr1:89663587-89665446:-|2.744603953100647|0.112490957303213|4.61|151.0|78|2|anti-sense;L1PA7_dup2115|chr3:47025814-47026968:+|1.5611777033938554|0.1292197099450274|3.59|151.0|45|1|anti-sense;L1PA13_dup2338|chr4:155691791-155692628:-|2.3409275509025376|0.0706579690820761|5.05|144.0|39|1|anti-sense;L1PB3_dup1309|chr6:110697243-110698797:+|2.379997980632222|0.0136228321876959|7.45|151.0|88|3|anti-sense;L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|182|1|anti-sense;L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|68|1|anti-sense;L1PA5_dup4666|chr6:110904343-110910070:+|3.7073387580364026|0.0750726793972703|5.63|151.0|285|3|anti-sense;L1PA5_dup10275|chr16:81688663-81690400:-|1.0315024279847984|0.1849837636819905|2.48|151.0|56|1|anti-sense;L1PA4_dup9825|chr13:21551445-21553498:-|2.1740763979942224|0.0390432671801415|5.8|151.0|69|1|anti-sense;L1PA16_dup12001|chr14:90990169-90991046:+|1.186035218532583|0.0300577996702606|5.3|150.0|62|3|anti-sense;L1P2_dup1349|chr14:30663955-30669057:+|4.4451201644472205|0.4642598085667838|3.26|151.0|149|1|anti-sense;L1PA7_dup12607|chr20:8563560-8565480:+|1.7436624409007413|0.0205598363661741|6.41|150.0|87|2|anti-sense;L1PA4_dup9161|chr11:95870738-95876262:-|5.970571055268581|0.2958328859559854|4.34|151.0|165|1|anti-sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|182|3|anti-sense L1PREC2_dup4155|chr9:96789667-96792581:-|2.537492698489147|0.2449288069892671|3.37|151.0|182|3|anti-sense MSMS UPN48_class_I_Rep_2 6 597.8566284179688 2 597.855327 1193.6961 NaN NaN NaN NaN NaN NaN NaN 84.775 1 88.468 87.968 88.968 3.6937 0 0 0 0.38299 1 20170 20170 4.756 0 1 51265 13482 32053 32070 58952 58952 0.10700062541741318 VRYALFIKN 9 Unmodified _VRYALFIKN_ 0 0 0 REV__ENSG00000169154|ENST00000307599|GOT1L1 REV__ENSG00000169154|ENST00000307599|GOT1L1 MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.15223 8.5605E-05 -0.093798 -5.2746E-05 0.058434 3.2859E-05 562.3346844473051 28.527 0.33382 28.527 28.481 28.814 0 41 23 3 0 0 0 0.48846 1 4466 4466 1.8442 0 1 2494000 + 51266 20298 32054 32071 58953 58953 0.09854301502264207 VRYHLIPA 8 Unmodified _VRYHLIPA_ 0 0 0 L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|99|3|sense L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|99|3|sense L1PBa_dup397|chr3:101407132-101410564:+|1.0008554921107458|0.0688511269675289|3.86|151.0|99|3|sense MSMS UPN47_class_I_Rep_1 2 484.3527526855469 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 113.57 1 117.15 116.65 117.65 3.572 0 0 0 0.40746 1 28029 28029 0.69038 0 1 51267 15384 32055 32072 58954 58954 0.07525787750944346 VRYHLMPI 8 Unmodified _VRYHLMPI_ 0 0 0 L1PA7_dup1256|chr2:99233603-99235620:+|2.4367558494673704|0.1458541512889456|4.06|151.0|14|1|sense L1PA7_dup1256|chr2:99233603-99235620:+|2.4367558494673704|0.1458541512889456|4.06|151.0|14|1|sense L1PA7_dup1256|chr2:99233603-99235620:+|2.4367558494673704|0.1458541512889456|4.06|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.7879028320312 2 514.78913 1027.56371 0.071518 3.6817E-05 0.28392 0.00014616 0.35544 0.00018298 514.7893087118115 49.658 0.9586 53.001 52.54 53.499 3.3431 130 59 3 0 0 0 0.82752 1 10759 10759 13.508 0.97634 1 249410 51268 14753 32056 32073 58955 58955 0.05102714533290964 VRYKSLLL 8 Unmodified _VRYKSLLL_ 0 0 0 L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense;L1M5_dup40758|chr12:132653387-132654201:-|1.9802332689239397|0.0511218523075145|5.28|151.0|21|2|sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.3172912597656 2 496.318577 990.622602 0.18631 9.2471E-05 -0.027636 -1.3716E-05 0.15868 7.8755E-05 496.3184653352489 43.591 0.72828 47.102 46.711 47.439 3.5103 90 60 2 0 0 0 0.82752 2 8112 8112;8208 14.838 0 1 157900 51269 9162 32057 32074 58956;58957 58956 0.12691514099276446 VRYKSLLL 8 Unmodified _VRYKSLLL_ 0 0 0 L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense;L1M5_dup40758|chr12:132653387-132654201:-|1.9802332689239397|0.0511218523075145|5.28|151.0|21|2|sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 496.31866455078125 2 496.318577 990.622602 0.20823 0.00010335 0.091866 4.5595E-05 0.3001 0.00014894 496.3185267617958 43.142 0.76676 46.904 46.635 47.402 3.7617 93 60 2 0 0 0 0.82752 1 8147 8147 7.9102 0 1 142600 51270 9162 32057 32074 58958 58958 0.12691514099276446 VRYKSLLL 8 Unmodified _VRYKSLLL_ 0 0 0 L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense;L1M5_dup40758|chr12:132653387-132654201:-|1.9802332689239397|0.0511218523075145|5.28|151.0|21|2|sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|238|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 496.3190612792969 2 496.318577 990.622602 0.16891 8.3833E-05 -0.10418 -5.1705E-05 0.064734 3.2129E-05 496.31845402844425 43.306 0.81753 46.945 46.623 47.441 3.6385 92 62 2 0 0 0 0.82752 1 7966 7966 7.9102 0 1 142460 51271 9162 32057 32074 58959 58959 0.12691514099276446 VRYKVKSF 8 Unmodified _VRYKVKSF_ 0 0 0 REV__L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|43|3|sense REV__L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.8072509765625 2 513.808377 1025.6022 0.26961 0.00013853 -2.1962 -0.0011284 -1.9266 -0.00098991 513.8066037716496 61.54 0.56724 64.908 64.711 65.278 3.3681 67 40 2 0 0 0 0.82752 1 14454 14454 5.7604 1.0044 1 297320 + 51272 26290 32058 32075 58960 58960 0.09042343439477918 VRYLPRLY 8 Unmodified _VRYLPRLY_ 0 0 0 ENSG00000170891|ENST00000307746|CYTL1 ENSG00000170891|ENST00000307746|CYTL1 ENSG00000170891|ENST00000307746|CYTL1 MULTI-MSMS UPN46_class_I_Rep_3 1 540.32177734375 2 540.321651 1078.62875 0.04611 2.4914E-05 0.00082478 4.4565E-07 0.046934 2.536E-05 540.321706732391 27.398 0.094345 27.398 27.378 27.472 0 12 5 3 0 0 0 0.82752 1 4070 4070 2.5775 0.27475 1 203170 51273 4494 32059 32076 58961 58961 0.09258032330808419 VRYLPRLY 8 Unmodified _VRYLPRLY_ 0 0 0 ENSG00000170891|ENST00000307746|CYTL1 ENSG00000170891|ENST00000307746|CYTL1 ENSG00000170891|ENST00000307746|CYTL1 MULTI-MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 0.095322 5.1504E-05 0.002777 1.5005E-06 0.098099 5.3005E-05 540.3215880316667 29.744 0.31389 29.744 29.521 29.834 0 48 25 3 0 0 0 0.82752 1 4758 4758 2.5775 0.27475 1 898200 51274 4494 32059 32076 58962 58962 0.09258032330808419 VRYQNLGIT 9 Unmodified _VRYQNLGIT_ 0 0 0 REV__L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|62|1|anti-sense REV__L1MC4_dup8303|chr5:141548831-141550293:+|2.9074803894430583|0.017352418432726|7.39|151.0|62|1|anti-sense MSMS UPN46_class_I_Rep_3 1 532.2980346679688 2 532.298373 1062.58219 NaN NaN NaN NaN NaN NaN NaN 64.969 1 64.969 64.469 65.469 0 0 0 0 0.39518 1 14660 14660 1.8442 0 1 + 51275 26947 32060 32077 58963 58963 0.053405477088290354 VRYRCRFVI 9 Unmodified _VRYRCRFVI_ 0 0 0 L1PA16_dup12634|chr17:8950334-8951262:-|3.0844452153541506|0.0202339593421273|7.25|151.0|45|2|anti-sense L1PA16_dup12634|chr17:8950334-8951262:-|3.0844452153541506|0.0202339593421273|7.25|151.0|45|2|anti-sense L1PA16_dup12634|chr17:8950334-8951262:-|3.0844452153541506|0.0202339593421273|7.25|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_1 5 606.3146362304688 2 606.345135 1210.67572 NaN NaN NaN NaN NaN NaN NaN 47.615 1 51.137 50.637 51.637 3.5219 0 0 0 0.39244 1 9428 9428 1.8442 0 1 51276 14045 32061 32078 58964 58964 0.07880568610289629 VRYRHFII 8 Unmodified _VRYRHFII_ 0 0 0 REV__MLT1F1_dup543|chr3:23869884-23870431:-|1.938895557363865|0.0607161427898069|5.0|151.0|27|2|anti-sense REV__MLT1F1_dup543|chr3:23869884-23870431:-|1.938895557363865|0.0607161427898069|5.0|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_1 5 552.3265380859375 2 552.327268 1102.63998 NaN NaN NaN NaN NaN NaN NaN 70.912 1 74.378 73.878 74.878 3.466 0 0 0 0.38221 1 16549 16549 14.582 5.2343 1 + 51277 31715 32062 32079 58965 58965 0.09276854424956582 VRYWLVSSY 9 Unmodified _VRYWLVSSY_ 0 0 0 Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|81|1|anti-sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|81|1|anti-sense Tigger1_dup9961|chr14:39412685-39414658:-|3.532587874367244|0.1411788897196479|4.65|151.0|81|1|anti-sense MSMS UPN47_class_I_Rep_2 3 586.8090209960938 2 586.808574 1171.60259 NaN NaN NaN NaN NaN NaN NaN 64.589 1 67.844 67.344 68.344 3.2556 0 0 0 0.39518 1 15397 15397 1.8442 0 1 51278 33220 32063 32080 58966 58966 0.02365718368673697 VSAGGGKRHF 10 Unmodified _VSAGGGKRHF_ 0 0 0 HAL1_dup20480|chr17:50738090-50739377:+|3.0072118045659577|0.4362075465327465|2.79|151.0|43|3|sense HAL1_dup20480|chr17:50738090-50739377:+|3.0072118045659577|0.4362075465327465|2.79|151.0|43|3|sense HAL1_dup20480|chr17:50738090-50739377:+|3.0072118045659577|0.4362075465327465|2.79|151.0|43|3|sense MSMS UPN47_class_I_Rep_1 2 508.26397705078125 2 508.275232 1014.53591 NaN NaN NaN NaN NaN NaN NaN 51.06 1 54.653 54.153 55.153 3.5932 0 0 0 0.53105 1 11250 11250 13.906 2.2658 1 51279 7863 32064 32081 58967 58967 0.029225275974113174 VSAICILLL 9 Unmodified _VSAICILLL_ 0 0 0 REV__L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|54|3|anti-sense REV__L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|54|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 473.2591552734375 2 472.796089 943.577625 0.16029 7.5787E-05 -0.010164 -4.8053E-06 0.15013 7.0981E-05 472.79632524811524 56.953 0.14743 56.953 56.911 57.059 0 20 16 2 0 0 0 0.10341 1 12444 12444 16.942 0 1 146320 + 51280 28431 32065 32082 58968 58968 0.10357947241720922 VSAIHKLMRWI 11 Unmodified _VSAIHKLMRWI_ 0 0 0 nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000486107.5_1_3:49946449-49946602:-|nuORF nc|ENSG00000164077|Q86VX9-2|MON1A nc|ENSG00000164077|Q86VX9-2|MON1A MSMS UPN48_class_I_Rep_3 7 451.93304443359375 3 451.932309 1352.7751 NaN NaN NaN NaN NaN NaN NaN 91.902 1 95.765 95.265 96.265 3.8634 0 0 0 0.38417 1 21798 21798 1.3296 0 1 51281 4076 32066 32083 58969 58969 0.112819665043844 VSAIINKDN 9 Unmodified _VSAIINKDN_ 0 0 0 REV__ENSG00000136834|ENST00000259357|OR1J1 REV__ENSG00000136834|ENST00000259357|OR1J1 MSMS UPN48_class_I_Rep_3 7 487.27825927734375 2 487.269281 972.52401 NaN NaN NaN NaN NaN NaN NaN 45.102 1 48.739 48.239 49.239 3.6372 0 0 0 0.28335 1 8598 8598 11.64 0 1 + 51282 19204 32067 32084 58970 58970 0.03664866063559202 VSAIYWLV 8 Unmodified _VSAIYWLV_ 0 0 0 L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|8|1|sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|8|1|sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 475.7716369628906 2 475.770929 949.527304 NaN NaN NaN NaN NaN NaN NaN 19.262 1 19.262 18.762 19.762 0 0 0 0 0.40404 1 1811 1811 5.2307 0 1 51283 14008 32068 32085 58971 58971 0.05052160908235237 VSAKYNKV 8 Unmodified _VSAKYNKV_ 0 0 0 Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|97|1|anti-sense Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|97|1|anti-sense Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|97|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 454.7637634277344 2 454.763635 907.512717 -0.22863 -0.00010397 0.39867 0.0001813 0.17004 7.7329E-05 454.76374739085526 44.497 0.63468 48.192 47.856 48.491 3.6951 67 45 2 0 0 0 0.82752 1 9340 9340 4.3292 0 1 108820 51284 33062 32069 32086 58972 58972 0.055260887600866226 VSALERRL 8 Unmodified _VSALERRL_ 0 0 0 REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 471.7955017089844 2 472.287808 942.561064 -0.31002 -0.00014642 0.016963 8.0112E-06 -0.29306 -0.00013841 472.28787519080345 24.227 0.68085 27.693 27.456 28.137 3.4655 82 60 2 0 0 0 0.72333 1 3168 3168 0.69038 0 1 58524 + 51285 20848 32070 32087 58973 58973 0.08748582400005489 VSALERRL 8 Unmodified _VSALERRL_ 0 0 0 REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 472.2876281738281 2 472.287808 942.561064 0.042289 1.9972E-05 0.15924 7.5205E-05 0.20152 9.5178E-05 472.28781187947413 86.357 1.084 89.737 89.272 90.356 3.3801 455 136 5 0 0 0 0.82752 1 21735 21735 2.5775 0 1 4897600 + 51286 20848 32070 32087 58974 58974 0.08748582400005489 VSALERRL 8 Unmodified _VSALERRL_ 0 0 0 REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF MSMS UPN48_class_I_Rep_3 7 472.2892150878906 2 472.287808 942.561064 NaN NaN NaN NaN NaN NaN NaN 106.13 1 109.83 109.33 110.33 3.702 0 0 0 0.40604 1 25034 25034 2.5775 0 1 + 51287 20848 32070 32087 58975 58975 0.08748582400005489 VSALERRL 8 Unmodified _VSALERRL_ 0 0 0 REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 472.287808 942.561064 -0.71198 -0.00033626 0.53615 0.00025322 -0.17583 -8.3041E-05 472.28797275708547 24.512 0.80362 27.863 27.548 28.352 3.3509 0.1061 0.00036113 NaN 0.69038 87 65 2 NaN NaN NaN NaN 0 NaN NaN 0 73084 + 51288 20848 32070 32087 0.08748582400005489 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 487.2786560058594 2 487.278921 972.543289 0.1459 7.1094E-05 -0.86275 -0.0004204 -0.71685 -0.00034931 487.2783372032702 45.083 0.5912 48.6 48.289 48.88 3.5162 59 43 2 0 0 0 0.82752 3 8582 8582;8631;8671 34.187 8.788 1 144220 + 51289 26988 32071 32088 58976;58977;58978 58976 0.05591867145130891 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_1 5 487.26910400390625 2 487.278921 972.543289 NaN NaN NaN NaN NaN NaN NaN 45.422 1 48.938 48.438 49.438 3.5162 0 0 0 0.39408 1 8757 8757 10.183 0.83596 1 + 51290 26988 32071 32088 58979 58979 0.05591867145130891 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 487.2784118652344 2 487.278921 972.543289 0.17273 8.4167E-05 -0.80496 -0.00039224 -0.63223 -0.00030807 487.2783343811563 44.69 0.56438 48.451 48.237 48.802 3.7617 75 39 2 0 0 0 0.82752 4 8519 8519;8535;8561;8597 34.187 8.788 1 151910 + 51291 26988 32071 32088 58980;58981;58982;58983 58980 0.05591867145130891 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 487.2772521972656 2 487.278921 972.543289 0.15442 7.5244E-05 -0.92525 -0.00045086 -0.77083 -0.00037561 487.2783868873476 45.032 0.44756 48.669 48.312 48.759 3.6372 44 27 2 0 0 0 0.82752 2 8522 8522;8557 26.341 5.4701 1 158810 + 51292 26988 32071 32088 58984;58985 58984 0.05591867145130891 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_3 7 486.83245849609375 2 487.278921 972.543289 NaN NaN NaN NaN NaN NaN NaN 50.181 1 53.802 53.302 54.302 3.621 0 0 0 0.39624 1 10153 10153 9.3474 0 1 + 51293 26988 32071 32088 58986 58986 0.05591867145130891 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 487.27825927734375 2 487.278921 972.543289 0.15442 7.5244E-05 -0.92525 -0.00045086 -0.77083 -0.00037561 487.2783868873476 45.032 0.44756 48.669 48.312 48.759 3.6372 44 27 2 0 0 0 0.72333 1 8598 8598 34.187 8.788 1 158810 + 51294 26988 32071 32088 58987 58987 0.05591867145130891 VSALLVWW 8 Unmodified _VSALLVWW_ 0 0 0 REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense REV__L1MC4a_dup3749|chr6:75649816-75650598:-|2.049666127262864|0.0662954802202901|4.95|151.0|47|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 487.278921 972.543289 0.1459 7.1094E-05 -0.86275 -0.0004204 -0.71685 -0.00034931 487.2783372032702 45.083 0.5912 48.6 48.289 48.88 3.5162 0.026155 4.973E-06 NaN 34.187 59 43 2 NaN NaN NaN NaN 0 NaN NaN 0 144220 + 51295 26988 32071 32088 0.05591867145130891 VSASAEESSSR 11 Unmodified _VSASAEESSSR_ 0 0 0 REV__ENST00000401050.7_1_1:53133125-53134458:+|nuORF REV__ENST00000401050.7_1_1:53133125-53134458:+|nuORF MSMS UPN47_class_I_Rep_1 2 555.2586669921875 2 555.257099 1108.49965 NaN NaN NaN NaN NaN NaN NaN 60.912 1 64.293 63.793 64.793 3.3815 0 0 0 0.37931 1 14246 14246 7.1017 0.37856 1 + 51296 22157 32072 32089 58988 58988 -0.050264388806226634 VSATILLQGV 10 Unmodified _VSATILLQGV_ 0 0 0 REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|194|3|anti-sense REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|194|3|anti-sense MSMS UPN47_class_I_Rep_2 3 500.7651672363281 2 500.8055 999.596446 NaN NaN NaN NaN NaN NaN NaN 53.065 1 56.391 55.891 56.891 3.3266 0 0 0 0.53105 1 11885 11885 1.6526 0 1 + 51297 30086 32073 32090 58989 58989 0.09663200137140393 VSAVSPVHL 9 Unmodified _VSAVSPVHL_ 0 0 0 REV__ENSG00000169499.15,PLEKHA2,chr8,+,I2.1,38902070,38917906|47|9.67|1|intron REV__ENSG00000169499.15,PLEKHA2,chr8,+,I2.1,38902070,38917906|47|9.67|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 455.2655944824219 2 454.763635 907.512717 -0.34643 -0.00015754 0.42501 0.00019328 0.078584 3.5737E-05 454.7637611743721 44.952 0.69456 48.307 48.04 48.734 3.3556 69 40 2 0 0 0 0.28552 1 9464 9464 14.838 0 1 102690 + 51298 20314 32074 32091 58990 58990 0.055260887600866226 VSAVYHDI 8 Unmodified _VSAVYHDI_ 0 0 0 REV__nc|ENSG00000147256|Q6ZRI8-3|ARHGAP36 REV__nc|ENSG00000147256|Q6ZRI8-3|ARHGAP36 MSMS UPN46_class_I_Rep_3 1 452.2315673828125 2 452.232168 902.449782 NaN NaN NaN NaN NaN NaN NaN 34.045 1 34.045 33.545 34.545 0 0 0 0 0.37681 1 6031 6031 15.847 0 1 + 51299 19565 32075 32092 58991 58991 -0.0053447702796347585 VSCCCFFF 8 Unmodified _VSCCCFFF_ 0 0 0 L1ME2_dup6812|chr9:70333751-70334520:+|1.0788336294175884|0.1046029106766808|3.37|151.0|27|3|sense L1ME2_dup6812|chr9:70333751-70334520:+|1.0788336294175884|0.1046029106766808|3.37|151.0|27|3|sense L1ME2_dup6812|chr9:70333751-70334520:+|1.0788336294175884|0.1046029106766808|3.37|151.0|27|3|sense MSMS UPN47_class_I_Rep_2 3 477.8219299316406 2 478.179178 954.343802 NaN NaN NaN NaN NaN NaN NaN 112.24 1 115.77 115.27 116.27 3.5226 0 0 0 0.40581 1 27333 27333 2.8892 0 1 51300 12516 32076 32093 58992 58992 -0.13519595460934397 VSCHSSRAKH 10 Unmodified _VSCHSSRAKH_ 0 0 0 REV__L1MC4_dup23896|chr20:35812454-35812966:-|1.4336836426128508|0.0133715637855652|6.74|151.0|40|3|anti-sense REV__L1MC4_dup23896|chr20:35812454-35812966:-|1.4336836426128508|0.0133715637855652|6.74|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_3 7 556.2744750976562 2 556.274906 1110.53526 NaN NaN NaN NaN NaN NaN NaN 39.405 1 43.061 42.561 43.561 3.6557 0 0 0 0.53105 1 6890 6890 1.6526 0.17072 1 + 51301 26889 32077 32094 58993 58993 -0.015586351139290855 VSCLLKFFRC 10 Unmodified _VSCLLKFFRC_ 0 0 0 REV__THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|92|3|anti-sense REV__THE1C-int_dup56|chr1:108784578-108786087:-|2.192758318198225|0.1894950337584605|3.53|151.0|92|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 405.8843994140625 3 405.884078 1214.63041 0.13183 5.3506E-05 0.22014 8.9353E-05 0.35197 0.00014286 405.88408344189094 65.466 1.5201 68.973 68.018 69.539 3.5077 169 110 3 0 0 0 0.56317 1 14784 14784 1.5923 0.52082 1 209980 + 51302 32290 32078 32095 58994 58994 0.03167582032892824 VSCMRLHLY 9 Unmodified _VSCMRLHLY_ 0 0 0 REV__L1PA7_dup2611|chr3:152397209-152397598:-|1.0085522461902137|0.0301709569799827|5.06|151.0|26|3|anti-sense REV__L1PA7_dup2611|chr3:152397209-152397598:-|1.0085522461902137|0.0301709569799827|5.06|151.0|26|3|anti-sense MSMS UPN48_class_I_Rep_2 6 561.2967529296875 2 561.283354 1120.55216 NaN NaN NaN NaN NaN NaN NaN 48.296 1 52.032 51.532 52.532 3.7361 0 0 0 0.37692 1 9634 9634 6.2058 0 1 + 51303 30054 32079 32096 58995 58995 -0.0032985055233893945 VSCNLFFF 8 Unmodified _VSCNLFFF_ 0 0 0 REV__L1MB3_dup2399|chr2:161189115-161189806:+|2.0130296882978587|0.063111677639478|5.0|151.0|47|3|anti-sense REV__L1MB3_dup2399|chr2:161189115-161189806:+|2.0130296882978587|0.063111677639478|5.0|151.0|47|3|anti-sense MSMS UPN46_class_I_Rep_3 1 488.73431396484375 2 488.733489 975.452425 NaN NaN NaN NaN NaN NaN NaN 64.169 1 64.169 63.669 64.669 0 0 0 0 0.40738 1 14428 14428 0.79363 0 1 + 51304 25866 32080 32097 58996 58996 -0.03628344894639213 VSDKTLSFY 9 Unmodified _VSDKTLSFY_ 0 0 0 ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF ENSG00000033050|ENST00000287844|ABCF2 ENSG00000033050|ENST00000287844|ABCF2 MULTI-MSMS UPN47_class_I_Rep_1 2 530.27197265625 2 530.27149 1058.52843 0.12471 6.6131E-05 0.70311 0.00037284 0.82782 0.00043897 530.2717316647093 47.354 0.81364 51.049 50.673 51.486 3.6951 144 78 3 0 0 0 0.006303 5 10123 10086;10123;10153;10196;10249 83.429 31.16 1 596560 51305 839 32081 32098 58997;58998;58999;59000;59001 58998 0.0015033048648547265 VSDKTLSFY 9 Unmodified _VSDKTLSFY_ 0 0 0 ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF ENSG00000033050|ENST00000287844|ABCF2 ENSG00000033050|ENST00000287844|ABCF2 MULTI-MSMS UPN47_class_I_Rep_2 3 530.272216796875 2 530.27149 1058.52843 0.11844 6.2805E-05 0.61087 0.00032393 0.72931 0.00038673 530.2716997765109 47.658 0.76961 51.007 50.698 51.468 3.3492 137 72 2 0 0 0 0.006303 8 10248 10176;10190;10207;10219;10248;10279;10317;10323 83.429 31.16 1 479880 51306 839 32081 32098 59002;59003;59004;59005;59006;59007;59008;59009 59006 0.0015033048648547265 VSDKTLSFY 9 Unmodified _VSDKTLSFY_ 0 0 0 ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF ENSG00000033050|ENST00000287844|ABCF2 ENSG00000033050|ENST00000287844|ABCF2 MSMS UPN47_class_I_Rep_2 3 530.271240234375 2 530.27149 1058.52843 NaN NaN NaN NaN NaN NaN NaN 48.18 1 51.529 51.029 52.029 3.3492 0 0 0 0.27207 1 10393 10393 12.241 0.60036 1 51307 839 32081 32098 59010 59010 0.0015033048648547265 VSDKTLSFY 9 Unmodified _VSDKTLSFY_ 0 0 0 ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF ENSG00000033050|ENST00000287844|ABCF2 ENSG00000033050|ENST00000287844|ABCF2 MULTI-MSMS UPN47_class_I_Rep_3 4 530.2714233398438 2 530.27149 1058.52843 0.30586 0.00016219 0.42483 0.00022527 0.73069 0.00038746 530.2716354404448 47.729 0.91964 50.97 50.714 51.634 3.2405 154 81 2 0 0 0 0.0070571 6 10306 10270;10306;10336;10374;10411;10485 86.332 34.063 1 574700 51308 839 32081 32098 59011;59012;59013;59014;59015;59016 59012 0.0015033048648547265 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 490.22161865234375 2 490.221997 978.429441 -0.29032 -0.00014232 -0.2545 -0.00012476 -0.54482 -0.00026708 490.22173423959237 32.359 0.37738 36.072 35.883 36.26 3.7131 56 31 2 0 0 0 0.23293 5 5541 5524;5541;5582;5608;5612 18.146 6.5061 1 125700 51309 4232 32082 32099 59017;59018;59019;59020;59021 59018 -0.060636924784148505 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 490.2215576171875 2 490.221997 978.429441 -0.10963 -5.3742E-05 0.00062682 3.0728E-07 -0.109 -5.3435E-05 490.22170219112587 32.527 0.4763 35.982 35.737 36.213 3.4547 48 32 3 0 0 0 0.17897 3 5647 5604;5647;5703 22.736 7.898 1 120340 51310 4232 32082 32099 59022;59023;59024 59023 -0.060636924784148505 VSDPSSPQY 9 Unmodified _VSDPSSPQY_ 0 0 0 ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1 ENST00000524903.1_1_11:6639992-6640524:-|nuORF ENST00000524903.1_1_11:6639992-6640524:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 490.22161865234375 2 490.221997 978.429441 -0.39328 -0.00019279 0.64648 0.00031692 0.25321 0.00012413 490.2220060166803 32.682 0.44993 35.968 35.725 36.175 3.2867 63 33 3 0 0 0 0.16559 3 5765 5685;5765;5787 24.021 7.0783 1 97331 51311 4232 32082 32099 59025;59026;59027 59026 -0.060636924784148505 VSDSRFIGII 10 Unmodified _VSDSRFIGII_ 0 0 0 REV__L1MEd_dup20597|chr20:44201474-44202093:+|1.0711068220676048|0.1777450844511923|2.59|151.0|33|2|anti-sense REV__L1MEd_dup20597|chr20:44201474-44202093:+|1.0711068220676048|0.1777450844511923|2.59|151.0|33|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.8134155273438 2 553.813856 1105.61316 0.041504 2.2986E-05 0.043785 2.4249E-05 0.085289 4.7234E-05 553.8137706086502 40.395 1.3272 43.766 43.336 44.663 3.3712 215 103 3 0 0 0 0.56118 1 8264 8264 2.9952 0 1 587020 + 51312 28560 32083 32100 59028 59028 0.06457701023100526 VSDSRKERQP 10 Unmodified _VSDSRKERQP_ 0 0 0 REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.3191528320312 2 601.317825 1200.6211 NaN NaN NaN NaN NaN NaN NaN 28.467 1 28.467 27.967 28.967 0 0 0 0 0.53105 1 4374 4374 3.5965 0 1 + 51313 17822 32084 32101 59029 59029 0.028812282725766636 VSDSRKERQP 10 Unmodified _VSDSRKERQP_ 0 0 0 REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS UPN47_class_I_Rep_1 2 601.3195190429688 2 601.317825 1200.6211 NaN NaN NaN NaN NaN NaN NaN 24.927 1 28.676 28.176 29.176 3.7495 0 0 0 0.53105 1 3339 3339 1.4819 0 1 + 51314 17822 32084 32101 59030 59030 0.028812282725766636 VSDSRKERQP 10 Unmodified _VSDSRKERQP_ 0 0 0 REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS UPN47_class_I_Rep_1 2 601.320556640625 2 601.317825 1200.6211 NaN NaN NaN NaN NaN NaN NaN 25.115 1 28.864 28.364 29.364 3.7495 0 0 0 0.53105 1 3394 3394 1.4819 0 1 + 51315 17822 32084 32101 59031 59031 0.028812282725766636 VSDSRKERQP 10 Unmodified _VSDSRKERQP_ 0 0 0 REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF REV__ENST00000554523.5_1_14:68228796-68282710:-|nuORF MSMS UPN48_class_I_Rep_2 6 601.3184204101562 2 601.317825 1200.6211 NaN NaN NaN NaN NaN NaN NaN 24.985 1 28.622 28.122 29.122 3.6363 0 0 0 0.53105 1 2978 2978 1.4819 0 1 + 51316 17822 32084 32101 59032 59032 0.028812282725766636 VSDVEHFFIY 10 Unmodified _VSDVEHFFIY_ 0 0 0 L1MA9_dup10376|chrX:154708006-154708947:+|1.592849191987426|0.0448975720548349|5.15|149.0|51|3|anti-sense L1MA9_dup10376|chrX:154708006-154708947:+|1.592849191987426|0.0448975720548349|5.15|149.0|51|3|anti-sense L1MA9_dup10376|chrX:154708006-154708947:+|1.592849191987426|0.0448975720548349|5.15|149.0|51|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 628.302978515625 2 628.303321 1254.59209 0.46298 0.00029089 -0.12871 -8.0871E-05 0.33426 0.00021002 628.3032599077679 60.786 0.57771 64.168 63.864 64.442 3.3815 97 54 2 0 0 0 0.56309 1 14137 14137 1.6526 0 1 182790 51317 10079 32085 32102 59033 59033 -0.025023090764079825 VSDVFFKF 8 Unmodified _VSDVFFKF_ 0 0 0 REV__L1PA5_dup4179|chr6:1676019-1677956:+|1.5775714030135537|0.0455849722196457|5.11|151.0|64|1|anti-sense REV__L1PA5_dup4179|chr6:1676019-1677956:+|1.5775714030135537|0.0455849722196457|5.11|151.0|64|1|anti-sense MSMS UPN47_class_I_Rep_3 4 494.7746276855469 2 494.760561 987.506569 NaN NaN NaN NaN NaN NaN NaN 45.896 1 49.14 48.64 49.64 3.2441 0 0 0 0.40625 1 9768 9768 2.3027 0 1 + 51318 29758 32086 32103 59034 59034 0.012315705285800504 VSDVPWRHFP 10 Unmodified _VSDVPWRHFP_ 0 0 0 THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|58|1|anti-sense THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|58|1|anti-sense THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|58|1|anti-sense MSMS UPN48_class_I_Rep_2 6 620.3147583007812 2 620.317097 1238.61964 NaN NaN NaN NaN NaN NaN NaN 48.106 1 51.842 51.342 52.342 3.7361 0 0 0 0.53105 1 9575 9575 1.6526 0.17072 1 51319 32961 32087 32104 59035 59035 0.00987638974447691 VSDYLRQSY 9 Unmodified _VSDYLRQSY_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS UPN47_class_I_Rep_1 2 565.7777709960938 2 565.77747 1129.54039 -0.03499 -1.9796E-05 0.27619 0.00015626 0.2412 0.00013647 565.777555135471 39.222 0.79266 42.887 42.501 43.294 3.6652 114 54 3 0 0 0 0.023676 5 7612 7570;7612;7655;7696;7733 61.09 38.638 1 223210 51320 5269 32088 32105 59036;59037;59038;59039;59040 59037 -0.019200527703333137 VSDYLRQSY 9 Unmodified _VSDYLRQSY_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS UPN47_class_I_Rep_2 3 565.7776489257812 2 565.77747 1129.54039 0.045214 2.5581E-05 0.17485 9.8923E-05 0.22006 0.0001245 565.7775391898543 39.483 0.69242 42.862 42.629 43.321 3.3785 111 43 3 0 0 0 0.0061843 5 7750 7708;7750;7795;7833;7877 75.571 41.169 1 214010 51321 5269 32088 32105 59041;59042;59043;59044;59045 59042 -0.019200527703333137 VSDYLRQSY 9 Unmodified _VSDYLRQSY_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS UPN47_class_I_Rep_3 4 565.777099609375 2 565.77747 1129.54039 -0.039677 -2.2448E-05 0.058455 3.3073E-05 0.018778 1.0624E-05 565.777520725458 39.667 0.75716 42.905 42.577 43.334 3.2379 112 52 3 0 0 0 0.0067715 6 7865 7780;7821;7865;7906;7952;7965 73.196 40.411 1 178380 51322 5269 32088 32105 59046;59047;59048;59049;59050;59051 59048 -0.019200527703333137 VSEASVLFY 9 Unmodified _VSEASVLFY_ 0 0 0 L1PA7_dup10659|chr12:100304584-100308650:+|1.2047139524276724|0.099594228989438|3.6|151.0|186|2|anti-sense L1PA7_dup10659|chr12:100304584-100308650:+|1.2047139524276724|0.099594228989438|3.6|151.0|186|2|anti-sense L1PA7_dup10659|chr12:100304584-100308650:+|1.2047139524276724|0.099594228989438|3.6|151.0|186|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 507.7950134277344 2 507.760758 1013.50696 0.23886 0.00012128 0.19328 9.8141E-05 0.43214 0.00021942 507.7608743742893 77.145 0.37047 80.56 80.353 80.723 3.4149 44 29 2 0 0 0 0.091029 1 19102 19102 21.747 0 1 121810 51323 14708 32089 32106 59052 59052 0.0007494545775443839 VSEASVLFY 9 Unmodified _VSEASVLFY_ 0 0 0 L1PA7_dup10659|chr12:100304584-100308650:+|1.2047139524276724|0.099594228989438|3.6|151.0|186|2|anti-sense L1PA7_dup10659|chr12:100304584-100308650:+|1.2047139524276724|0.099594228989438|3.6|151.0|186|2|anti-sense L1PA7_dup10659|chr12:100304584-100308650:+|1.2047139524276724|0.099594228989438|3.6|151.0|186|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 507.7950439453125 2 507.760758 1013.50696 0.18842 9.5672E-05 0.24079 0.00012226 0.42921 0.00021794 507.7607391236826 77.356 0.4359 80.687 80.41 80.846 3.3315 69 44 2 0 0 0 0.070541 1 19145 19145 28.487 0 1 96896 51324 14708 32089 32106 59053 59053 0.0007494545775443839 VSECLPLL 8 Unmodified _VSECLPLL_ 0 0 0 L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|110|2|anti-sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|110|2|anti-sense L1PA15-16_dup61|chr2:24611588-24613886:-|1.6112469653108277|0.0143326539592465|6.81|151.0|110|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 436.7397766113281 2 437.241147 872.46774 0.098358 4.3006E-05 1.4715 0.00064339 1.5698 0.0006864 437.2419526676469 67.735 0.22603 67.735 67.699 67.925 0 32 24 2 0 0 0 0.72333 1 15430 15430 2.5775 0 1 172200 51325 14005 32090 32107 59054 59054 0.02640521902560522 VSEQELLRY 9 Unmodified _VSEQELLRY_ 0 0 0 PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6 PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 568.8010864257812 2 568.800946 1135.58734 0.20767 0.00011812 0.0018576 1.0566E-06 0.20953 0.00011918 568.8008982198127 49.372 0.61974 53.031 52.754 53.374 3.6592 74 43 2 0 0 0 0.12306 1 10724 10724 29.437 10.075 1 152140 51326 2476 32091 32108 59055 59055 0.024968067808231353 VSEQELLRY 9 Unmodified _VSEQELLRY_ 0 0 0 PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6 PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_2 3 568.801513671875 2 568.800946 1135.58734 0.42213 0.00024011 0.13069 7.4335E-05 0.55282 0.00031444 568.8009324616445 49.701 0.77702 53.044 52.722 53.499 3.3431 79 46 2 0 0 0 0.092386 2 10883 10836;10883 35.612 7.1177 1 149460 51327 2476 32091 32108 59056;59057 59057 0.024968067808231353 VSEQELLRY 9 Unmodified _VSEQELLRY_ 0 0 0 PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6 PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant PEX6|p.R972H|1|0.1|ENSG00000124587|chr6:42964363-42964363|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_3 4 568.8008422851562 2 568.800946 1135.58734 0.47386 0.00026953 -0.074998 -4.2659E-05 0.39886 0.00022687 568.8008638707173 49.812 0.66304 53.038 52.741 53.404 3.2262 62 37 2 0 0 0 0.13455 2 10955 10913;10955 27.223 10.11 1 166060 51328 2476 32091 32108 59058;59059 59059 0.024968067808231353 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 622.8114624023438 2 622.81151 1243.60847 0.24362 0.00015173 -0.19132 -0.00011916 0.052306 3.2577E-05 622.8114652365139 48.457 0.6433 52.139 51.917 52.561 3.6819 83 40 3 0 0 0 0.42663 3 10472 10430;10472;10535 17.443 5.202 1 147660 51329 4484 32092 32109 59060;59061;59062 59061 -0.0035922791032589885 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 622.8112182617188 2 622.81151 1243.60847 0.38104 0.00023732 -0.77198 -0.0004808 -0.39094 -0.00024348 622.8113959789475 48.793 0.74313 52.139 51.815 52.558 3.3465 78 43 3 0 0 0 0.47804 4 10576 10548;10576;10616;10627 13.615 0.76745 1 152660 51330 4484 32092 32109 59063;59064;59065;59066 59064 -0.0035922791032589885 VSERDVYLTY 10 Unmodified _VSERDVYLTY_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50636123-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 622.8112182617188 2 622.81151 1243.60847 0.4338 0.00027018 -0.70115 -0.00043668 -0.26735 -0.00016651 622.8112237777898 48.928 0.65499 52.162 51.854 52.509 3.2345 88 38 3 0 0 0 0.43841 2 10725 10629;10725 16.566 6.4153 1 141670 51331 4484 32092 32109 59067;59068 59068 -0.0035922791032589885 VSERLLVF 8 Unmodified _VSERLLVF_ 0 0 0 REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|118|2|anti-sense REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_2 3 482.21942138671875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 25.673 1 29.165 28.665 29.665 3.4915 0 0 0 0.40738 1 3600 3600 0.79363 0 1 + 51332 27300 32093 32110 59069 59069 0.07734948311247081 VSERLLVF 8 Unmodified _VSERLLVF_ 0 0 0 REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|118|2|anti-sense REV__L1MD1_dup1849|chr4:140015974-140018015:+|1.6924576630572037|0.0287643783784971|5.88|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_3 4 481.78662109375 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 26.297 1 29.645 29.145 30.145 3.3478 0 0 0 0.40738 1 3825 3825 0.79363 0 1 + 51333 27300 32093 32110 59070 59070 0.07734948311247081 VSESLAHIY 9 Unmodified _VSESLAHIY_ 0 0 0 ERVL-E-int_dup7332|chr15:84702938-84704398:+|2.0601137652415744|0.0213016731837156|6.6|151.0|91|2|anti-sense ERVL-E-int_dup7332|chr15:84702938-84704398:+|2.0601137652415744|0.0213016731837156|6.6|151.0|91|2|anti-sense ERVL-E-int_dup7332|chr15:84702938-84704398:+|2.0601137652415744|0.0213016731837156|6.6|151.0|91|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 509.76373291015625 2 509.763832 1017.51311 -0.13955 -7.1136E-05 -0.025839 -1.3172E-05 -0.16539 -8.4308E-05 509.76373580808746 41.835 0.91343 45.514 45.182 46.095 3.6792 155 64 3 0 0 0 0.32219 1 8388 8388 12.532 0 1 500660 51334 7764 32094 32111 59071 59071 0.005054636892737108 VSEVSSLNY 9 Unmodified _VSEVSSLNY_ 0 0 0 ENSG00000117000|ENST00000372771|RLF;ENSG00000117000.9,RLF,chr1,+,I4.1,40195765,40202411|53|7.76|1|intron;ENSG00000117000.9,RLF,chr1,+,I5.1,40202615,40222573|86|9.79|1|intron ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-MSMS UPN47_class_I_Rep_1 2 499.737060546875 2 499.245472 996.476391 -0.065091 -3.2496E-05 0.09795 4.8901E-05 0.032859 1.6404E-05 499.2453507703686 46.631 0.2691 50.331 50.156 50.425 3.6999 28 19 2 0 0 0 0.38714 1 9887 9887 8.7454 2.0222 1 59987 51335 2206 32095 32112 59072 59072 -0.021988329272744522 VSEVSSLNY 9 Unmodified _VSEVSSLNY_ 0 0 0 ENSG00000117000|ENST00000372771|RLF;ENSG00000117000.9,RLF,chr1,+,I4.1,40195765,40202411|53|7.76|1|intron;ENSG00000117000.9,RLF,chr1,+,I5.1,40202615,40222573|86|9.79|1|intron ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-MSMS UPN47_class_I_Rep_2 3 499.7371520996094 2 499.245472 996.476391 0.081343 4.061E-05 -0.082106 -4.0991E-05 -0.00076252 -3.8068E-07 499.2453585013064 46.991 0.40518 50.343 50.19 50.596 3.3515 36 27 2 0 0 0 0.36392 1 10022 10022 10.074 3.3508 1 80277 51336 2206 32095 32112 59073 59073 -0.021988329272744522 VSEVSSLNY 9 Unmodified _VSEVSSLNY_ 0 0 0 ENSG00000117000|ENST00000372771|RLF;ENSG00000117000.9,RLF,chr1,+,I4.1,40195765,40202411|53|7.76|1|intron;ENSG00000117000.9,RLF,chr1,+,I5.1,40202615,40222573|86|9.79|1|intron ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-MSMS UPN47_class_I_Rep_3 4 499.737548828125 2 499.245472 996.476391 0.11271 5.6271E-05 0.1026 5.1225E-05 0.21532 0.0001075 499.2454404559976 47.021 0.50553 50.265 50.037 50.543 3.2439 41 31 2 0 0 0 0.31407 1 10109 10109 13.042 4.4492 1 62896 51337 2206 32095 32112 59074 59074 -0.021988329272744522 VSFCLIHYY 9 Unmodified _VSFCLIHYY_ 0 0 0 REV__L1MA3_dup7747|chr15:55884180-55886484:+|1.105474032884794|0.0275737079209759|5.33|151.0|94|1|anti-sense REV__L1MA3_dup7747|chr15:55884180-55886484:+|1.105474032884794|0.0275737079209759|5.33|151.0|94|1|anti-sense MSMS UPN47_class_I_Rep_2 3 572.7799682617188 2 572.778428 1143.5423 NaN NaN NaN NaN NaN NaN NaN 59.185 1 62.466 61.966 62.966 3.2818 0 0 0 0.38299 1 13757 13757 4.756 1.8668 1 + 51338 25112 32096 32113 59075 59075 -0.02372715286105631 VSFHQKMHN 9 Unmodified _VSFHQKMHN_ 0 0 0 L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|112|1|anti-sense L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|112|1|anti-sense L1ME2_dup1418|chr2:58147623-58150014:-|1.4122912966921155|0.0593513708034139|4.57|151.0|112|1|anti-sense MSMS UPN48_class_I_Rep_2 6 564.275146484375 2 564.274375 1126.5342 NaN NaN NaN NaN NaN NaN NaN 37.023 1 40.725 40.225 41.225 3.7021 0 0 0 0.39518 1 6288 6288 1.8442 0.36234 1 51339 12481 32097 32114 59076 59076 -0.024008494828422045 VSFIQNLVF 9 Unmodified _VSFIQNLVF_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 533.8008422851562 2 533.800217 1065.58588 0.33782 0.00018033 0.15235 8.1322E-05 0.49016 0.00026165 533.8001809291318 90.775 0.32443 94.401 94.191 94.515 3.626 71 43 2 0 0 0 0.13244 1 21805 21805 27.629 4.4804 1 137180 51340 1628 32098 32115 59077 59077 0.055712174827021954 VSFIQNLVF 9 Unmodified _VSFIQNLVF_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 533.3406982421875 2 533.800217 1065.58588 0.43944 0.00023457 -0.16936 -9.0406E-05 0.27008 0.00014417 533.8000964658711 90.096 0.53156 93.843 93.644 94.176 3.7471 91 74 2 0 0 0 0.069349 1 21487 21487 31.268 8.1199 1 169030 51341 1628 32098 32115 59078 59078 0.055712174827021954 VSFIQNLVF 9 Unmodified _VSFIQNLVF_ 0 0 0 ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron ENSG00000102893.16,PHKB,chr16,+,I36.1,47696489,47698447|35|4.15|2|intron MULTI-MATCH UPN48_class_I_Rep_1 5 2 533.800217 1065.58588 0.33875 0.00018082 0.018224 9.728E-06 0.35697 0.00019055 533.8002144536258 90.493 0.20324 94.119 93.988 94.191 3.626 0.15509 0.00015908 NaN 31.268 39 27 2 NaN NaN NaN NaN 0 NaN NaN 0 75419 51342 1628 32098 32115 0.055712174827021954 VSFIRLRLIE 10 Unmodified _VSFIRLRLIE_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-2|APOBEC3B MULTI-MSMS UPN47_class_I_Rep_2 3 623.8895263671875 2 623.387522 1244.76049 0.63471 0.00039567 0.47173 0.00029407 1.1064 0.00068974 623.3876781048372 108.68 0.83012 112.21 112.11 112.94 3.5333 205 98 4 0 0 0 0.54466 1 26555 26555 6.2058 0.9089 1 31049000 + 51343 32073 32099 32116 59079 59079 0.14790217627887614 VSFSGTFRPF 10 Unmodified _VSFSGTFRPF_ 0 0 0 L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|278|3|anti-sense L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|278|3|anti-sense L1PB1_dup3296|chr4:98424796-98428976:+|7.582074034608164|0.1296493222190097|5.87|151.0|278|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 573.2940673828125 2 572.792924 1143.57129 0.44692 0.00025599 -0.66645 -0.00038174 -0.21953 -0.00012575 572.7925455065271 70.73 0.51674 74.19 73.915 74.432 3.4598 81 55 2 0 0 0 0.84575 1 16534 16534 8.1555 8.1555 1 167570 51344 15084 32100 32117 59080 59080 0.005251453345636037 VSGEESHH 8 Unmodified _VSGEESHH_ 0 0 0 nc|ENSG00000162946|Q9NRI5-10|DISC1;nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946.23,DISC1,chr1,+,I19.1,232026555,232036691|44|7.64|2|intron;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-5|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-6|DISC1;nc|ENSG00000162946|Q9NRI5-4|DISC1;nc|ENSG00000162946|Q9NRI5-7|DISC1;ENSG00000162946.23,DISC1,chr1,+,I9.1,231771071,231774638|43|6.54|4|intron;ENSG00000162946.23,DISC1,chr1,+,I9.1,231771071,231774638|43|6.54|2|intron;ENSG00000162946.23,DISC1,chr1,+,I9.1,231771071,231774638|43|6.54|3|intron;ENSG00000162946.23,DISC1,chr1,+,I9.1,231771071,231774638|43|6.54|5|intron;ENST00000468399.2_1_1:231765255-231837778:+|nuORF;ENSG00000162946|ENST00000439617|DISC1 nc|ENSG00000162946|Q9NRI5-10|DISC1 nc|ENSG00000162946|Q9NRI5-10|DISC1 MSMS UPN48_class_I_Rep_2 6 440.7992858886719 2 441.191031 880.367509 NaN NaN NaN NaN NaN NaN NaN 97.768 1 101.55 101.05 102.05 3.779 0 0 0 0.40581 1 23226 23226 2.8892 0 1 51345 3975 32101 32118 59081 59081 -0.07745999106896306 VSGESESESL 10 Unmodified _VSGESESESL_ 0 0 0 nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 nc|ENSG00000132972|Q9BXT8-4|RNF17 MSMS UPN47_class_I_Rep_3 4 512.2351684570312 2 512.227476 1022.4404 NaN NaN NaN NaN NaN NaN NaN 57.812 1 60.98 60.48 61.48 3.1681 0 0 0 0.53105 1 13387 13387 9.3831 1.473 1 51346 2785 32102 32119 59082 59082 -0.06992334894800933 VSGILSILFY 10 Unmodified _VSGILSILFY_ 0 0 0 REV__Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|61|3|anti-sense REV__Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|61|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.3231811523438 2 556.323525 1110.6325 0.46822 0.00026048 -0.19106 -0.00010629 0.27716 0.00015419 556.323201706714 80.103 0.75208 83.412 82.856 83.608 3.309 208 86 3 0 0 0 0.46161 5 19942 19905;19942;19980;20015;20080 14.838 0 1 282100 + 51347 32676 32103 32120 59083;59084;59085;59086;59087 59084 0.0816065731398794 VSGKKMKK 8 Unmodified _VSGKKMKK_ 0 0 0 nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4;ENST00000509517.1_1_4:146067334-146072008:-|nuORF;ENST00000237841.5_1_12:3948629-3949796:+|nuORF;ENST00000455611.6_1_4:146049153-146095893:-|nuORF nc|ENSG00000164164|Q01804-5|OTUD4 nc|ENSG00000164164|Q01804-5|OTUD4 MSMS UPN46_class_I_Rep_3 1 453.28558349609375 2 453.28368 904.552807 NaN NaN NaN NaN NaN NaN NaN 82.551 1 82.551 82.051 83.051 0 0 0 0 0.40746 1 19560 19560 0.69038 0 1 51348 4091 32104 32121 59088 59088 0.09671312159014178 VSGLGAGG 8 Unmodified _VSGLGAGG_ 0 0 0 REV__ENST00000273308.8_2_12:56709793-56710018:-|nuORF REV__ENST00000273308.8_2_12:56709793-56710018:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 617.8271484375 1 617.325316 616.31804 0.47285 0.0002919 2.3275 0.0014368 2.8003 0.0017287 617.3271335707403 69.179 0.13277 72.633 72.564 72.697 3.4548 11 8 2 0 0 0 0.72333 1 16039 16039 0 0 1 54473 + 51349 21612 32105 32122 59089 59089 -0.005466623250299563 VSGLLEVLL 9 Unmodified _VSGLLEVLL_ 0 0 0 REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7948303222656 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.151 1 52.81 52.31 53.31 3.6592 0 0 0 0.2088 1 10669 10669 15.847 0 1 + 51350 28380 32106 32123 59090 59090 0.10660699251184269 VSGLLEVLL 9 Unmodified _VSGLLEVLL_ 0 0 0 REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_1 2 471.79644775390625 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.237 1 52.896 52.396 53.396 3.6592 0 0 0 0.38478 1 10694 10694 4.3292 0 1 + 51351 28380 32106 32123 59091 59091 0.10660699251184269 VSGLLEVLL 9 Unmodified _VSGLLEVLL_ 0 0 0 REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7940673828125 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.362 1 52.709 52.209 53.209 3.3465 0 0 0 0.38639 1 10755 10755 3.9444 0 1 + 51352 28380 32106 32123 59092 59092 0.10660699251184269 VSGLLEVLL 9 Unmodified _VSGLLEVLL_ 0 0 0 REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense REV__L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_2 3 471.7933044433594 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.515 1 52.859 52.359 53.359 3.3431 0 0 0 0.28335 1 10802 10802 11.64 0 1 + 51353 28380 32106 32123 59093 59093 0.10660699251184269 VSGNNRANRV 10 Unmodified _VSGNNRANRV_ 0 0 0 REV__L1MD1_dup1210|chr3:58361320-58362196:-|1.7510388694732726|0.0201738429572869|6.44|151.0|12|1|sense REV__L1MD1_dup1210|chr3:58361320-58362196:-|1.7510388694732726|0.0201738429572869|6.44|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 544.3024291992188 2 543.791778 1085.569 -0.22897 -0.00012451 -0.013145 -7.1482E-06 -0.24212 -0.00013166 543.7916658664973 12.833 0.16703 12.833 12.777 12.944 0 22 15 2 0 0 0 0.56543 1 210 210 0 0 1 24394 + 51354 27292 32107 32124 59094 59094 0.029641096494515295 VSGRQNIIRS 10 Unmodified _VSGRQNIIRS_ 0 0 0 L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|151|3|anti-sense L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|151|3|anti-sense L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|151|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 565.325439453125 2 565.325454 1128.63635 0.16401 9.2722E-05 0.081598 4.6129E-05 0.24561 0.00013885 565.3255100781643 28.608 0.77999 28.608 28.256 29.036 0 88 55 3 0 0 0 0.56118 1 4375 4375 2.9952 0 1 143970 51355 10642 32108 32125 59095 59095 0.0771813986041252 VSGTLCTDYF 10 Unmodified _VSGTLCTDYF_ 0 0 0 L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|213|3|anti-sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|213|3|anti-sense L1PA15_dup6360|chr12:10954777-10958575:+|2.274186437487737|0.2093711203498035|3.44|151.0|213|3|anti-sense MSMS UPN47_class_I_Rep_3 4 553.245361328125 2 553.247157 1104.47976 NaN NaN NaN NaN NaN NaN NaN 71.272 1 74.491 73.991 74.991 3.2188 0 0 0 0.53105 1 17479 17479 9.3831 0 1 51356 13965 32109 32126 59096 59096 -0.06829906144935194 VSGYDPIFY 9 Unmodified _VSGYDPIFY_ 0 0 0 REV__L1PA17_dup3139|chr10:48336815-48340545:+|4.359049074070192|0.1049366483354406|5.38|151.0|124|1|anti-sense REV__L1PA17_dup3139|chr10:48336815-48340545:+|4.359049074070192|0.1049366483354406|5.38|151.0|124|1|anti-sense MSMS UPN47_class_I_Rep_1 2 530.7537841796875 2 530.752933 1059.49131 NaN NaN NaN NaN NaN NaN NaN 62.382 1 65.75 65.25 66.25 3.3681 0 0 0 0.074 1 14692 14692 30.225 0 1 + 51357 29464 32110 32127 59097 59097 -0.03605341059278544 VSHEPGETGST 11 Unmodified _VSHEPGETGST_ 0 0 0 REV__nc|ENSG00000081237|P08575-4|PTPRC REV__nc|ENSG00000081237|P08575-4|PTPRC MSMS UPN48_class_I_Rep_1 5 550.7487182617188 2 550.746367 1099.47818 NaN NaN NaN NaN NaN NaN NaN 44.423 1 47.936 47.436 48.436 3.5132 0 0 0 0.38417 1 8454 8454 1.1933 0.39971 1 + 51358 17912 32111 32128 59098 59098 -0.067578239093109 VSHFVWIY 8 Unmodified _VSHFVWIY_ 0 0 0 REV__L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|69|1|anti-sense REV__L1MA4_dup1923|chr3:129815234-129816741:+|1.501651258338096|0.0209422863909092|6.16|150.0|69|1|anti-sense MSMS UPN47_class_I_Rep_1 2 525.7128295898438 2 525.774003 1049.53345 NaN NaN NaN NaN NaN NaN NaN 111.47 1 115.04 114.54 115.54 3.572 0 0 0 0.40738 1 27499 27499 0.79363 0 1 + 51359 25143 32112 32129 59099 59099 0.010666791397625275 VSHNLLPP 8 Unmodified _VSHNLLPP_ 0 0 0 REV__ENSG00000186118|ENST00000334122|TEX38 REV__ENSG00000186118|ENST00000334122|TEX38 MSMS UPN47_class_I_Rep_2 3 438.76934814453125 2 438.750527 875.486502 NaN NaN NaN NaN NaN NaN NaN 118.07 1 121.55 121.05 122.05 3.4822 0 0 0 0.40738 1 28877 28877 0.79363 0 1 + 51360 20877 32113 32130 59100 59100 0.04377819588614784 VSHQWPQDQ 9 Unmodified _VSHQWPQDQ_ 0 0 0 REV__AluJr_dup18728|chr4:57099735-57100035:-|1.172731124837228|0.3222811598099261|1.86|150.0|1|1|sense REV__AluJr_dup18728|chr4:57099735-57100035:-|1.172731124837228|0.3222811598099261|1.86|150.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.7584228515625 2 562.759612 1123.50467 0.046369 2.6095E-05 -1.1264 -0.00063388 -1.08 -0.00060779 562.7588546100487 30.485 0.68497 33.967 33.767 34.452 3.4821 99 55 3 0 0 0 0.47197 1 4999 4999 3.5965 0 1 128210 + 51361 17031 32114 32131 59101 59101 -0.052140902273322354 VSHRVRRQR 9 Unmodified _VSHRVRRQR_ 0 0 0 REV__ENST00000216274.9_1_14:24808704-24809147:-|nuORF REV__ENST00000216274.9_1_14:24808704-24809147:-|nuORF MSMS UPN46_class_I_Rep_3 1 597.3577270507812 2 597.357954 1192.70135 NaN NaN NaN NaN NaN NaN NaN 85.528 1 85.528 85.028 86.028 0 0 0 0 0.39518 1 20408 20408 1.8442 0 1 + 51362 21473 32115 32132 59102 59102 0.11271179176924306 VSHRVRRQR 9 Unmodified _VSHRVRRQR_ 0 0 0 REV__ENST00000216274.9_1_14:24808704-24809147:-|nuORF REV__ENST00000216274.9_1_14:24808704-24809147:-|nuORF MSMS UPN46_class_I_Rep_3 1 597.357421875 2 597.357954 1192.70135 NaN NaN NaN NaN NaN NaN NaN 103.23 1 103.23 102.73 103.73 0 0 0 0 0.39518 1 25191 25191 1.8442 0 1 + 51363 21473 32115 32132 59103 59103 0.11271179176924306 VSHTLSVCVI 10 Unmodified _VSHTLSVCVI_ 0 0 0 Tigger3c_dup86|chr1:119929600-119930175:+|1.1564038845839535|0.2008124099586623|2.53|151.0|19|3|sense Tigger3c_dup86|chr1:119929600-119930175:+|1.1564038845839535|0.2008124099586623|2.53|151.0|19|3|sense Tigger3c_dup86|chr1:119929600-119930175:+|1.1564038845839535|0.2008124099586623|2.53|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.2896118164062 2 529.289159 1056.56377 0.366 0.00019372 0.54343 0.00028763 0.90943 0.00048135 529.2895092450698 65.049 0.19378 68.228 68.167 68.361 3.1795 23 14 2 0 0 0 0.52083 1 15592 15592 9.3831 1.473 1 65303 51364 33415 32116 32133 59104 59104 0.037746697426428 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8558349609375 2 597.856921 1193.69929 0.57537 0.00034399 -1.4671 -0.0008771 -0.8917 -0.00053311 597.8556823949074 87.132 0.35141 87.132 87.028 87.379 0 32 26 2 0 0 0 0.56333 1 20855 20855 1.4819 0 1 235180 + 51365 27765 32117 32134 59105 59105 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8565673828125 2 597.856921 1193.69929 0.57534 0.00034397 -1.0812 -0.00064638 -0.50582 -0.00030241 597.8561387250852 88.13 0.13803 88.13 88.072 88.21 0 19 10 2 0 0 0 0.56333 1 21157 21157 1.4819 0 1 310650 + 51366 27765 32117 32134 59106 59106 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8572998046875 2 597.856921 1193.69929 0.57628 0.00034454 -0.83574 -0.00049965 -0.25945 -0.00015512 597.8560667071771 88.377 0.22119 88.377 88.199 88.421 0 46 21 3 0 0 0 0.56333 1 21174 21174 1.4819 0 1 546920 + 51367 27765 32117 32134 59107 59107 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8564453125 2 597.856921 1193.69929 0.57613 0.00034445 -0.80207 -0.00047952 -0.22593 -0.00013508 597.8562249818585 88.579 0.29892 88.579 88.402 88.701 0 55 32 3 0 0 0 0.56333 1 21243 21243 1.4819 0 1 414190 + 51368 27765 32117 32134 59108 59108 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8565673828125 2 597.856921 1193.69929 0.5754 0.000344 -0.8571 -0.00051242 -0.28171 -0.00016842 597.8562716397298 88.718 0.17508 88.718 88.574 88.749 0 36 20 2 0 0 0 0.56118 1 21322 21322 2.9952 1.151 1 680560 + 51369 27765 32117 32134 59109 59109 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 597.8558349609375 2 597.856921 1193.69929 0.57537 0.00034399 -1.4671 -0.0008771 -0.8917 -0.00053311 597.8556823949074 87.132 0.35141 87.132 87.028 87.379 0 32 26 2 0 0 0 0.84575 1 20855 20855 1.4819 0 1 235180 + 51370 27765 32117 32134 59110 59110 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 597.8563842773438 2 597.856921 1193.69929 0.53383 0.00031915 -0.74772 -0.00044703 -0.21389 -0.00012788 597.8560335386833 83.491 0.48811 86.903 86.655 87.143 3.4116 85 59 2 0 0 0 0.56333 1 20790 20790 1.4819 0 1 91040 + 51371 27765 32117 32134 59111 59111 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 597.8565673828125 2 597.856921 1193.69929 0.43327 0.00025903 -0.8405 -0.0005025 -0.40723 -0.00024347 597.8560557878972 83.345 0.54756 86.932 86.464 87.012 3.5871 107 63 2 0 0 0 0.56078 2 19862 19835;19862 3.2813 0.28607 1 94377 + 51372 27765 32117 32134 59112;59113 59113 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.8551635742188 2 597.856921 1193.69929 0.48242 0.00028842 -0.72251 -0.00043196 -0.2401 -0.00014354 597.8559838552633 83.004 0.18136 86.686 86.582 86.763 3.6814 34 21 2 0 0 0 0.56333 1 19698 19698 1.4819 0 1 109710 + 51373 27765 32117 32134 59114 59114 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 597.85693359375 2 597.856921 1193.69929 0.48391 0.00028931 -0.80924 -0.00048381 -0.32533 -0.0001945 598.3580373583875 86.011 0.30119 89.717 89.617 89.918 3.7058 61 34 2 0 0 0 0.56189 1 20509 20509 2.4985 0.43874 1 168290 + 51374 27765 32117 32134 59115 59115 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 597.855712890625 2 597.856921 1193.69929 0.55911 0.00033427 -0.88823 -0.00053104 -0.32912 -0.00019677 597.8560645566207 83.197 0.92611 86.903 86.469 87.395 3.7066 161 121 2 0 0 0 0.56333 1 19745 19745 1.4819 0 1 147630 + 51375 27765 32117 32134 59116 59116 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 597.8563232421875 2 597.856921 1193.69929 0.55793 0.00033356 -0.92435 -0.00055263 -0.36642 -0.00021907 597.8557661033469 83.742 0.076385 87.47 87.424 87.5 3.7281 14 9 2 0 0 0 0.56333 1 19859 19859 1.4819 0 1 66986 + 51376 27765 32117 32134 59117 59117 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 597.856921 1193.69929 0.48516 0.00029006 -0.91122 -0.00054478 -0.42606 -0.00025472 597.8560438978519 84.771 0.081375 88.133 88.063 88.144 3.3615 0.051517 0.00015823 NaN 1.4819 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 88704 + 51377 27765 32117 32134 0.11018705648439209 VSHVRKLRAE 10 Unmodified _VSHVRKLRAE_ 0 0 0 REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense REV__L1ME1_dup348|chr1:32837605-32838060:-|2.7843906495238864|0.2507607258580407|3.47|151.0|6|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 597.856921 1193.69929 0.48306 0.0002888 -1.287 -0.00076941 -0.80389 -0.00048061 597.855869105533 84.288 0.036934 87.981 87.964 88.001 3.6937 -0.1001 -0.00029104 NaN 1.4819 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 72566 + 51378 27765 32117 32134 0.11018705648439209 VSHWQFTL 8 Unmodified _VSHWQFTL_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MULTI-SECPEP UPN47_class_I_Rep_2 3 509.7929382324219 2 509.261259 1016.50797 -0.25494 -0.00012983 0.31178 0.00015878 0.056841 2.8947E-05 509.2612843057651 38.86 0.50726 42.238 42.144 42.651 3.3785 35 29 2 0 0 0 0.72333 1 7611 7611 2.3027 0 1 53512 + 51379 21387 32118 32135 59118 59118 0.00037204617342467827 VSHWQFTL 8 Unmodified _VSHWQFTL_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MULTI-MATCH UPN47_class_I_Rep_1 2 2 509.261259 1016.50797 -0.18473 -9.4078E-05 0.43711 0.0002226 0.25237 0.00012852 509.2612982202934 38.443 0.81169 42.109 41.898 42.71 3.6652 -0.064812 4.2113E-05 NaN 2.3027 69 55 2 NaN NaN NaN NaN 0 NaN NaN 0 53697 + 51380 21387 32118 32135 0.00037204617342467827 VSIAKQLKWIS 11 Unmodified _VSIAKQLKWIS_ 0 0 0 REV__ENSG00000187688|ENST00000338560|TRPV2 REV__ENSG00000187688|ENST00000338560|TRPV2 MULTI-MSMS UPN48_class_I_Rep_2 6 636.8876342773438 2 636.887355 1271.76016 0.49809 0.00031722 0.50521 0.00032176 1.0033 0.00063898 636.8874914563645 108.75 0.57068 112.42 112.23 112.8 3.6746 111 57 2 0 0 0 0.50573 1 25881 25881 7.609 0 1 16017000 + 51381 20938 32119 32136 59119 59119 0.1351479790803296 VSIDYLLSR 9 Unmodified _VSIDYLLSR_ 0 0 0 REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|380|3|anti-sense REV__L1PA7_dup7925|chrX:57094342-57100758:+|1.8242756068032608|0.2437260517943701|2.9|151.0|380|3|anti-sense MSMS UPN47_class_I_Rep_3 4 533.30029296875 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 85.019 1 88.38 87.88 88.88 3.3615 0 0 0 0.36505 1 21326 21326 7.2892 0 1 + 51382 30166 32120 32137 59120 59120 0.05690012131753974 VSIFFVLSPV 10 Unmodified _VSIFFVLSPV_ 0 0 0 REV__L1MA2_dup5532|chr11:78334125-78336031:-|2.7920563860714327|0.0959483368068011|4.86|151.0|78|1|anti-sense REV__L1MA2_dup5532|chr11:78334125-78336031:-|2.7920563860714327|0.0959483368068011|4.86|151.0|78|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 554.3272094726562 2 554.326068 1106.63758 0.41557 0.00023036 4.1028 0.0022743 4.5184 0.0025046 554.3281537786838 107.99 0.3943 107.99 107.91 108.31 0 49 32 3 0 0 0 0.51565 1 26386 26386 10.074 0 1 23808000 + 51383 24894 32121 32138 59121 59121 0.08852961176603458 VSIFSNKLL 9 Unmodified _VSIFSNKLL_ 0 0 0 Tigger1_dup10565|chr16:28114368-28116179:-|1.8828674083409935|0.4572161784032258|2.04|151.0|34|2|sense Tigger1_dup10565|chr16:28114368-28116179:-|1.8828674083409935|0.4572161784032258|2.04|151.0|34|2|sense Tigger1_dup10565|chr16:28114368-28116179:-|1.8828674083409935|0.4572161784032258|2.04|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.8076171875 2 510.808042 1019.60153 0.24499 0.00012514 -0.069426 -3.5463E-05 0.17556 8.968E-05 510.80786859879163 58.772 0.69455 62.295 62.027 62.722 3.5231 77 45 2 0 0 0 0.38714 1 12862 12862 8.7454 1.4562 1 196390 51384 32986 32122 32139 59122 59122 0.09251503999769284 VSIHSLKSRQR 11 Unmodified _VSIHSLKSRQR_ 0 0 0 THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|66|2|anti-sense THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|66|2|anti-sense THE1D-int_dup1884|chr11:73027035-73028659:+|2.682540096814284|0.0155857373099803|7.43|151.0|66|2|anti-sense MSMS UPN47_class_I_Rep_1 2 437.5916748046875 3 437.593232 1309.75787 NaN NaN NaN NaN NaN NaN NaN 91.045 1 94.75 94.25 95.25 3.7053 0 0 0 0.38417 1 22733 22733 0.45452 0 1 51385 32956 32123 32140 59123 59123 0.11537762222928905 VSIIESTWVS 10 Unmodified _VSIIESTWVS_ 0 0 0 nc|ENSG00000166589|O75309-3|CDH16;nc|ENSG00000166589|O75309-4|CDH16;nc|ENSG00000166589|O75309-2|CDH16;ENSG00000166589|ENST00000299752|CDH16 nc|ENSG00000166589|O75309-3|CDH16 nc|ENSG00000166589|O75309-3|CDH16 MSMS UPN48_class_I_Rep_3 7 560.7984008789062 2 560.797872 1119.58119 NaN NaN NaN NaN NaN NaN NaN 48.542 1 52.175 51.675 52.675 3.6339 0 0 0 0.53105 1 9649 9649 6.2058 0 1 51386 4252 32124 32141 59124 59124 0.02618288549274439 VSIKIKAEI 9 Unmodified _VSIKIKAEI_ 0 0 0 L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 500.82354736328125 2 500.823692 999.632832 0.19986 0.0001001 -0.19393 -9.7125E-05 0.0059347 2.9722E-06 500.82355496544477 44.066 0.82202 47.579 47.324 48.146 3.5132 86 59 2 0 0 0 0.26468 1 8386 8386 16.149 0 1 130570 51387 14915 32125 32142 59125 59125 0.13300077033841262 VSIKIKAEI 9 Unmodified _VSIKIKAEI_ 0 0 0 L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 500.82379150390625 2 500.823692 999.632832 0.21479 0.00010757 -0.052772 -2.643E-05 0.16201 8.1141E-05 500.82362818975685 44.027 0.39721 47.789 47.677 48.074 3.7617 41 30 2 0 0 0 0.26468 1 8329 8329 16.149 0 1 203520 51388 14915 32125 32142 59126 59126 0.13300077033841262 VSIKIKAEI 9 Unmodified _VSIKIKAEI_ 0 0 0 L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense MSMS UPN48_class_I_Rep_2 6 500.8238525390625 2 500.823692 999.632832 NaN NaN NaN NaN NaN NaN NaN 43.835 1 47.597 47.097 48.097 3.7617 0 0 0 0.20399 1 8286 8286 16.149 0 1 51389 14915 32125 32142 59127 59127 0.13300077033841262 VSIKIKAEI 9 Unmodified _VSIKIKAEI_ 0 0 0 L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|26|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 500.8232727050781 2 500.823692 999.632832 0.17843 8.9363E-05 -0.1221 -6.1149E-05 0.056336 2.8215E-05 500.82357967383047 43.991 0.79559 47.63 47.25 48.046 3.6385 94 50 2 0 0 0 0.19147 3 8259 8218;8259;8304 21.537 0 1 128000 51390 14915 32125 32142 59128;59129;59130 59129 0.13300077033841262 VSILCTVYL 9 Unmodified _VSILCTVYL_ 0 0 0 L1MC5_dup10027|chr11:43461417-43462005:+|3.3363184297445043|0.1099968288423458|4.92|151.0|26|3|sense L1MC5_dup10027|chr11:43461417-43462005:+|3.3363184297445043|0.1099968288423458|4.92|151.0|26|3|sense L1MC5_dup10027|chr11:43461417-43462005:+|3.3363184297445043|0.1099968288423458|4.92|151.0|26|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 505.7833251953125 2 505.783179 1009.5518 0.1676 8.4772E-05 -0.21961 -0.00011108 -0.052006 -2.6304E-05 505.78299830577146 73.323 0.53181 76.624 76.372 76.904 3.3015 78 42 2 0 0 0 0.25207 2 17992 17992;18037 16.942 0 1 152190 51391 11644 32126 32143 59131;59132 59131 0.047410529994408535 VSILKRRP 8 Unmodified _VSILKRRP_ 0 0 0 REV__ENSG00000103522|ENST00000337929|IL21R REV__ENSG00000103522|ENST00000337929|IL21R MSMS UPN48_class_I_Rep_3 7 484.8199462890625 2 484.821818 967.629084 NaN NaN NaN NaN NaN NaN NaN 64.4 1 67.909 67.409 68.409 3.5083 0 0 0 0.40404 1 14475 14475 5.2307 0 1 + 51392 18231 32127 32144 59133 59133 0.14397452050639004 VSINISLLINN 11 Unmodified _VSINISLLINN_ 0 0 0 REV__L1MC5_dup11186|chr13:21106045-21107202:+|1.5227161364048325|0.0018731963451544|9.67|133.0|44|1|anti-sense REV__L1MC5_dup11186|chr13:21106045-21107202:+|1.5227161364048325|0.0018731963451544|9.67|133.0|44|1|anti-sense MSMS UPN46_class_I_Rep_3 1 600.3534545898438 2 600.353345 1198.69214 NaN NaN NaN NaN NaN NaN NaN 13.084 1 13.084 12.584 13.584 0 0 0 0 0.38417 1 293 293 0 0 1 + 51393 27053 32128 32145 59134 59134 0.10073928257406806 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MSMS UPN46_class_I_Rep_3 1 518.816650390625 2 518.816733 1035.61891 NaN NaN NaN NaN NaN NaN NaN 108.5 1 108.5 108 109 0 0 0 0 0.3377 1 26541 26541 8.7454 1.1365 1 51394 7724 32129 32146 59135 59135 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 518.8171997070312 2 518.816733 1035.61891 0.40269 0.00020892 0.11905 6.1766E-05 0.52174 0.00027069 518.8166961786699 107.84 0.21249 111.51 111.43 111.64 3.6724 36 13 5 0 0 0 0.23293 1 26434 26434 18.146 0 1 55896000 51395 7724 32129 32146 59136 59136 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 518.8172607421875 2 518.816733 1035.61891 0.25339 0.00013146 0.2566 0.00013313 0.50999 0.00026459 518.8167630040615 107.84 0.2161 111.37 111.31 111.52 3.5345 70 24 5 0 0 0 0.31407 1 26097 26097 13.042 0 1 62201000 51396 7724 32129 32146 59137 59137 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 518.8173828125 2 518.816733 1035.61891 0.36496 0.00018935 0.37543 0.00019478 0.74039 0.00038413 518.8168185041945 107.84 0.16907 111.38 111.3 111.47 3.5382 54 18 5 0 0 0 0.31407 1 26331 26331 13.042 0 1 82968000 51397 7724 32129 32146 59138 59138 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 518.8163452148438 2 518.816733 1035.61891 0.26291 0.0001364 0.13195 6.8457E-05 0.39486 0.00020486 518.8167497979165 107.84 0.42383 111.47 111.37 111.79 3.6313 89 36 5 0 0 0 0.16559 2 26002 26002;26064 24.021 0 1 140700000 51398 7724 32129 32146 59139;59140 59139 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 518.8172607421875 2 518.816733 1035.61891 0.36036 0.00018696 0.20402 0.00010585 0.56437 0.00029281 518.8167286421971 107.81 0.15021 111.49 111.41 111.56 3.6783 41 13 4 0 0 0 0.23293 1 25493 25493 18.146 0 1 95754000 51399 7724 32129 32146 59141 59141 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 518.81640625 2 518.816733 1035.61891 0.37455 0.00019432 0.096312 4.9968E-05 0.47086 0.00024429 518.8166777579524 107.81 0.22929 111.5 111.43 111.66 3.6813 56 23 4 0 0 0 0.23293 1 25438 25438 18.146 0 1 119360000 51400 7724 32129 32146 59142 59142 0.10252844325441401 VSIPVRTKH 9 Unmodified _VSIPVRTKH_ 0 0 0 ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense ERVL-B4-int_dup200|chr1:173398915-173401332:+|1.3264669316251745|0.0189088459485184|6.13|151.0|148|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 518.816733 1035.61891 0.35996 0.00018675 -0.27808 -0.00014427 0.081879 4.248E-05 518.8165495473878 107.89 0.035278 111.56 111.55 111.59 3.6746 0.10379 -0.00046605 NaN 24.021 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1395000 51401 7724 32129 32146 0.10252844325441401 VSISLTTWAST 11 Unmodified _VSISLTTWAST_ 0 0 0 REV__THE1D-int_dup495|chr3:195318265-195319889:+|8.582303483802193|0.2157894745774536|5.31|151.0|93|3|anti-sense REV__THE1D-int_dup495|chr3:195318265-195319889:+|8.582303483802193|0.2157894745774536|5.31|151.0|93|3|anti-sense MSMS UPN48_class_I_Rep_2 6 583.307373046875 2 583.308603 1164.60265 NaN NaN NaN NaN NaN NaN NaN 29.44 1 33.072 32.572 33.572 3.6316 0 0 0 0.38417 1 4182 4182 1.1933 0.23107 1 + 51402 32311 32130 32147 59143 59143 0.026936735779599985 VSKAPKQN 8 Unmodified _VSKAPKQN_ 0 0 0 REV__nc|ENSG00000141837|O00555-5|CACNA1A REV__nc|ENSG00000141837|O00555-5|CACNA1A MULTI-SECPEP UPN48_class_I_Rep_1 5 436.8791198730469 2 436.253434 870.492316 -0.018066 -7.8813E-06 0.73071 0.00031877 0.71264 0.00031089 436.2534457327074 76.636 0.022186 80.146 80.134 80.157 3.5102 4 2 2 0 0 0 0.72333 1 18203 18203 2.3027 0 1 48534 + 51403 19392 32131 32148 59144 59144 0.051889181002820806 VSKFLTTTRG 10 Unmodified _VSKFLTTTRG_ 0 0 0 REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.3198852539062 2 555.319306 1108.62406 0.49566 0.00027525 -0.18637 -0.00010349 0.30929 0.00017175 555.3190733446721 95.484 0.06868 99.264 99.224 99.293 3.7804 11 8 2 0 0 0 0.56543 1 22691 22691 0 0 1 47107 + 51404 29586 32132 32149 59145 59145 0.07409103397321815 VSKFLTTTRG 10 Unmodified _VSKFLTTTRG_ 0 0 0 REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 555.319306 1108.62406 0.48255 0.00026797 1.1084 0.00061554 1.591 0.00088351 555.3199219305883 95.832 0.044525 99.444 99.418 99.462 3.6124 0.027621 0.00072804 NaN 0 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 32246 + 51405 29586 32132 32149 0.07409103397321815 VSKFLTTTRG 10 Unmodified _VSKFLTTTRG_ 0 0 0 REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 555.319306 1108.62406 0.49566 0.00027525 -0.18637 -0.00010349 0.30929 0.00017175 555.3190733446721 95.484 0.06868 99.264 99.224 99.293 3.7804 -0.15252 -0.00071003 NaN 0 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 47107 + 51406 29586 32132 32149 0.07409103397321815 VSKFLTTTRG 10 Unmodified _VSKFLTTTRG_ 0 0 0 REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|104|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 555.319306 1108.62406 0.39875 0.00022143 -0.47 -0.000261 -0.071259 -3.9572E-05 555.3190293828466 95.633 0.071442 99.541 99.514 99.586 3.9084 0.1249 -0.001025 NaN 0 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 62627 + 51407 29586 32132 32149 0.07409103397321815 VSKIVQTY 8 Unmodified _VSKIVQTY_ 0 0 0 nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 nc|ENSG00000072110|P12814-2|ACTN1 MSMS UPN46_class_I_Rep_3 1 469.2704162597656 2 469.271293 936.528032 NaN NaN NaN NaN NaN NaN NaN 35.472 1 35.472 34.972 35.972 0 0 0 0 0.37552 1 6463 6463 16.149 0 1 51408 1096 32133 32150 59146 59146 0.05722955557280329 VSKKKKKAKT 10 Unmodified _VSKKKKKAKT_ 0 0 0 AluSz6_dup33753|chr13:28044167-28044481:+|1.3789431097102025|0.0018132379067305|9.57|150.0|11|3|sense AluSz6_dup33753|chr13:28044167-28044481:+|1.3789431097102025|0.0018132379067305|9.57|150.0|11|3|sense AluSz6_dup33753|chr13:28044167-28044481:+|1.3789431097102025|0.0018132379067305|9.57|150.0|11|3|sense MSMS UPN48_class_I_Rep_3 7 573.789306640625 2 573.390065 1144.76558 NaN NaN NaN NaN NaN NaN NaN 47.327 1 50.964 50.464 51.464 3.6363 0 0 0 0.53105 1 9277 9277 0 0 1 51409 386 32134 32151 59147 59147 0.19898521490495114 VSKKKKKK 8 Unmodified _VSKKKKKK_ 0 0 0 ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron;AluSq2_dup39075|chr11:117091190-117091504:-|1.470955180927242|0.0275977348529068|5.74|151.0|12|3|sense;AluSc_dup11622|chr6:15261303-15261619:-|1.3857046107551485|0.0084049862416929|7.37|151.0|4|1|sense;AluJb_dup106550|chr17:29130015-29130328:+|1.0169917282977778|0.2010890538191201|2.34|150.0|8|2|sense;AluJb_dup114468|chr19:8477376-8477690:+|1.2080984882157542|0.2269956848158189|2.41|151.0|9|2|sense;AluSz_dup82424|chr16:31456184-31456512:+|1.6082946916755108|0.279501394561653|2.52|151.0|4|1|sense;AluSz_dup71985|chr13:46134841-46135136:+|1.001121318446743|0.069485534442065|3.85|151.0|14|3|sense;AluJo_dup15805|chr3:172179601-172179885:+|1.3648642346477668|0.0317770882813136|5.42|151.0|6|1|sense;AluSz_dup40583|chr7:102554961-102555262:+|1.5301916725614584|0.1320514382541295|3.53|151.0|4|1|sense;AluSz_dup4837|chr1:112627363-112627666:+|1.0059107103777063|0.0122274573955245|6.36|151.0|11|3|sense;AluJb_dup97408|chr15:64536595-64536939:+|1.1525906254041485|0.020058349977158|5.84|151.0|8|2|sense;AluSx3_dup14468|chr8:56000447-56000755:+|1.151864762557423|0.0503705733853448|4.52|151.0|4|1|sense;AluYb8_dup2486|chr16:81085875-81086192:+|1.5122806302290728|0.0110908870120779|7.09|151.0|9|2|sense;AluJo_dup27052|chr7:5325725-5326013:-|1.5213308184720684|0.1651516221997646|3.2|151.0|14|3|sense;AluJb_dup29624|chr4:39725099-39725406:+|1.1125469404993902|0.0083028357733881|7.07|151.0|9|2|sense;AluSx3_dup1741|chr1:150614804-150615122:-|1.0795379011025883|0.3783703859150329|1.51|151.0|4|1|sense;AluY_dup54770|chrX:1498125-1498435:+|1.1865320543414275|0.0084966476498408|7.13|151.0|3|1|sense;AluSz_dup2843|chr1:44488709-44489029:-|2.021063283771314|0.001508016629532|10.39|149.0|3|1|sense;AluSx_dup71542|chr11:68087833-68088138:+|1.0655789459652438|0.2285443006936511|2.22|151.0|4|1|sense;AluSx_dup28320|chr4:139842763-139843080:-|1.180155841028122|0.0323816947535664|5.19|151.0|3|1|sense;AluSz_dup95676|chr19:43775845-43776156:+|1.341525092068257|0.2895024462409359|2.21|151.0|13|3|sense;AluJb_dup31192|chr4:86971856-86972160:+|1.1557033653713158|0.0506525838497008|4.51|151.0|8|2|sense;AluSz_dup71758|chr13:41000238-41000520:-|1.71694479659355|0.0294901629545871|5.86|151.0|7|2|sense;AluJo_dup16959|chr4:37673177-37673491:-|1.3339420807382287|0.0420036789527594|4.99|151.0|4|1|sense;AluSx_dup45155|chr7:92702221-92702532:-|1.03194360799682|0.0079359477361618|7.02|151.0|8|2|sense;AluY_dup20748|chr3:128744863-128745172:-|1.3995828524395022|0.0193729715410296|6.17|151.0|5|1|sense;AluSx_dup44338|chr7:74221136-74221439:+|1.0745435070546157|0.1673393530776288|2.68|151.0|4|1|sense;AluSc8_dup17695|chr16:30264559-30264866:-|1.8841084479571768|0.0350316887477073|5.75|141.0|3|1|sense;AluSx1_dup105232|chr19:14770632-14770979:-|1.3549225901839963|0.0517293597980532|4.71|151.0|7|2|sense;AluYc_dup605|chr2:143323615-143323923:+|1.3018683034299043|0.0138857713875746|6.55|151.0|12|3|sense;AluSc8_dup1064|chr1:148132724-148133049:-|1.048666390692628|0.152672006067931|2.78|151.0|13|3|sense;AluSp_dup32895|chr12:48934732-48935048:+|1.320267927406906|0.2698896703621427|2.29|151.0|3|1|sense;AluSx_dup79678|chr13:20075671-20075990:-|1.2971277543585338|0.1266681964418258|3.36|151.0|3|1|sense;AluSz_dup63186|chr11:65101499-65101791:+|1.1258479328103803|0.1789080273138316|2.65|151.0|5|2|sense;AluSc8_dup17569|chr16:22521877-22522194:-|1.0112380684301203|0.1458066444924646|2.79|151.0|10|3|sense;AluSz_dup50139|chr9:121151379-121151690:-|1.1916663530598048|0.1011518170215417|3.56|151.0|6|2|sense;AluYa5_dup3346|chr16:29498426-29498734:+|1.3409665550769314|0.2679349252411568|2.32|150.0|8|2|sense;AluSc8_dup2855|chr2:143329916-143330124:+|1.149660041491836|0.1172580669888508|3.29|151.0|2|1|sense;AluSz_dup41804|chr7:140014628-140014933:+|1.15037077312796|0.1991579754341343|2.53|151.0|3|1|sense;AluJr_dup4116|chr1:146148509-146148813:-|2.5149217557996475|0.1449563314920023|4.12|151.0|7|2|sense;AluSp_dup18759|chr7:5316273-5316578:-|1.0202996891094072|0.1312816178218115|2.96|151.0|7|2|sense;AluJr_dup64769|chr15:72575300-72575576:+|1.2241448226281189|0.2869398917780198|2.09|151.0|4|1|sense;AluJr_dup4196|chr1:149471890-149472193:+|1.6143741810683374|0.1202273204748408|3.75|150.0|7|2|sense;AluSc_dup24983|chr13:28203793-28204108:-|1.8120731137978063|0.0566638251193462|5.0|151.0|9|3|sense;AluSq2_dup31069|chrX:1499138-1499462:-|1.5395508035514358|0.0062414000396377|7.95|151.0|3|1|sense;AluJb_dup50801|chr7:101924555-101924874:-|1.140538455333128|0.0146719781818162|6.28|151.0|8|2|sense;AluSc5_dup2357|chr6:37937375-37937683:+|1.084791176850963|0.0178369695725773|5.93|151.0|8|2|sense;AluSc_dup24695|chr12:123418741-123418905:-|1.025923941098607|0.0647521339294671|3.99|151.0|5|2|sense;AluSz6_dup40411|chr17:29775281-29775413:-|1.1878742533519098|0.0047286142690144|7.97|151.0|2|1|sense;AluSg_dup23078|chr11:85965803-85966118:-|1.2997060456899487|0.1545317601811918|3.07|151.0|11|3|sense;AluJr_dup58813|chr13:24435636-24435944:+|1.3081684778736178|0.4399319945180523|1.57|151.0|4|1|sense;AluJb_dup123000|chr21:34985868-34986168:-|4.30322303369084|0.0031157899056902|10.43|151.0|4|1|sense;AluSq2_dup43013|chr13:50076127-50076300:-|1.1694993928611372|0.0316751327751098|5.21|151.0|4|2|sense;AluSc_dup1190|chr1:84502133-84502431:-|1.1339121460569557|0.2738988821901151|2.05|151.0|9|2|sense;AluSp_dup21612|chr8:27335311-27335625:+|2.116776128184221|0.0137248562862914|7.27|151.0|9|2|sense;AluSz6_dup35643|chr14:77529613-77529877:-|2.4723117532484533|0.0337849508184891|6.19|151.0|11|3|sense;AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|6|2|sense;AluSx_dup3403|chr1:44426445-44426756:+|7.536563247805768|0.0051538838688349|10.51|150.0|5|2|sense;AluSz6_dup11677|chr4:88024177-88024486:+|1.8646567345259537|0.1812015690417556|3.36|151.0|10|3|sense;AluY_dup102515|chr21:35000229-35000539:-|3.6507063802806585|0.0123665757316047|8.21|151.0|3|1|sense;AluSz6_dup38450|chr16:22414807-22415114:+|1.299481011766876|0.1587221448838685|3.03|151.0|12|3|sense;AluSx1_dup80101|chr13:50100294-50100593:+|1.5466399999492386|0.0149047366921249|6.7|151.0|5|2|sense;ENSG00000114648.12,KLHL18,chr3,+,I2.1,47287459,47297561|44|8.3|2|intron;ENSG00000156931.16,VPS8,chr3,+,I14.1,184840538,184843239|34|8.08|1|intron;AluSc5_dup1372|chr3:152275429-152275733:+|1.1880608909720085|0.0271697228334584|5.45|151.0|6|2|sense;AluSx4_dup590|chr1:150570765-150571077:-|2.1342444646540457|0.105967639227483|4.33|151.0|11|3|sense;AluSq2_dup52972|chr17:75339610-75339928:-|1.0264101669115455|0.0087650663995817|6.87|151.0|2|1|sense;AluSx1_dup95818|chr17:16056301-16056615:-|2.065512397684905|0.1457344396816498|3.83|151.0|7|2|sense;AluSx1_dup40549|chr7:5396025-5396359:+|1.0424467558055392|0.0113723642859148|6.52|151.0|2|1|sense;AluSx1_dup11362|chr2:47080494-47080801:-|1.0036142378960498|0.076206546041602|3.72|151.0|3|1|sense;AluY_dup96550|chr19:14386409-14386720:+|1.9209719304379904|0.006845905290993|8.13|151.0|8|2|sense;L1MA9_dup9928|chrX:110056911-110058237:-|1.4689676103795184|0.021824552053597|6.07|150.0|39|3|sense;AluJb_dup2247|chr1:25872510-25872810:-|1.3497471436805837|0.2136152214269012|2.66|151.0|14|3|sense;AluSx4_dup1648|chr2:196169069-196169364:-|1.834119963367384|0.0371979367684726|5.62|151.0|7|2|sense;AluSg_dup28072|chr15:64555603-64555916:+|1.149660041491836|0.0099553560841403|6.85|151.0|3|1|sense;AluSz6_dup29367|chr11:33279034-33279353:+|1.4850189648933|0.050532709470012|4.88|151.0|7|2|sense;AluSg_dup1036|chr1:44627065-44627370:+|1.2503119037881556|0.0163544881670791|6.26|148.0|12|3|sense;AluY_dup96553|chr19:14398388-14398699:+|1.9229341821933987|0.0184223482077187|6.71|151.0|2|1|sense;AluSc_dup23142|chr11:128703563-128703867:+|1.0975876874808397|0.0312910234274664|5.13|151.0|12|3|sense;AluSg_dup15121|chr7:128655513-128655817:+|3.305765374298272|0.4587638308191766|2.85|151.0|10|3|sense;L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|88|2|anti-sense;AluJb_dup79090|chr11:75329089-75329394:-|1.2723348898708988|0.0192350965170493|6.05|151.0|12|3|sense;AluSz6_dup8929|chr3:71776336-71776677:-|1.0979109594689225|0.1281722971251909|3.1|144.0|2|1|sense;AluSx1_dup57548|chrX:1505981-1506289:-|1.320267927406906|0.0052721651570004|7.97|151.0|5|2|sense;AluSp_dup36978|chr14:77539916-77540227:+|1.2671476759244478|0.005451369661649|7.86|151.0|3|1|sense;AluSg_dup28683|chr16:1754492-1754784:+|1.2888519958983002|0.3768154835575893|1.77|151.0|6|2|sense;AluSz_dup93518|chr19:14395019-14395325:+|10.341666272422795|0.1608963011635844|6.01|151.0|5|2|sense;AluSg_dup33130|chr19:11935231-11935530:-|1.71694479659355|0.1090503076067477|3.98|151.0|8|2|sense;AluSx3_dup30169|chr19:49100525-49100829:+|1.197054585276311|0.1409183835558195|3.09|151.0|4|1|sense;AluYm1_dup3384|chr12:123420019-123420323:-|1.5716281650872277|0.1295347203622032|3.6|151.0|4|1|sense;AluSx_dup24440|chr3:195321217-195321495:-|1.1918532753262188|0.0350445463337739|5.09|151.0|6|2|sense;AluSz_dup97372|chr20:5588545-5588853:+|1.4209198316636276|0.2235317013009011|2.67|151.0|12|3|sense;AluSp_dup26402|chrX:71536963-71537267:-|1.1067031627186918|0.1800464351904771|2.62|151.0|6|2|sense;AluY_dup100420|chr20:35737581-35737871:+|2.053613795037021|0.084784781518268|4.6|151.0|12|3|sense;AluSz_dup2844|chr1:44503052-44503358:+|4.402692099462418|0.0035205081527398|10.29|151.0|7|2|sense;AluY_dup47539|chr8:67209872-67210180:+|1.5811442226867714|0.1000343144832197|3.98|151.0|10|3|sense;AluSx_dup97031|chr17:30780971-30781278:-|1.284802133161412|0.2359223228121592|2.45|151.0|6|2|sense;AluSx_dup95381|chr17:3909968-3910274:-|1.877014168818273|0.0695525519770201|4.75|151.0|6|2|sense;AluSx_dup5514|chr1:111664092-111664403:+|1.064072076968426|0.0124995668977657|6.41|151.0|7|2|sense;AluJb_dup108985|chr17:58265574-58265884:-|1.105951891051778|0.0026692216152215|8.69|143.0|8|2|sense;AluSx1_dup27592|chr4:139852404-139852714:-|1.3613469434606251|0.0166570501208252|6.35|151.0|4|1|sense;AluJb_dup27419|chr3:172181115-172181424:+|1.5538133095794642|0.0380709329230247|5.35|151.0|10|3|sense;AluJb_dup109963|chr17:68120862-68121160:+|1.039969110704712|0.1263125355173859|3.04|149.0|7|2|sense;AluSz_dup39457|chr7:75375481-75375792:-|2.50789388097832|0.0847248720501522|4.89|151.0|9|2|sense;AluSz_dup40595|chr7:102654053-102654354:+|1.5695272253275503|0.1974104865479011|2.99|150.0|4|1|sense;AluSz_dup100480|chr21:34826427-34826743:-|3.906401736549194|0.0988936738004072|5.3|151.0|8|2|sense;AluSx1_dup96395|chr17:29746264-29746577:+|1.1894265863130384|0.0626124722347983|4.25|151.0|4|1|sense;AluSx1_dup19495|chr3:50339355-50339668:-|1.1836872178441429|0.0999671576793565|3.57|151.0|8|2|sense;AluSz_dup53309|chrX:56758053-56758345:+|1.2203900739573337|0.0125093452148424|6.61|151.0|4|1|sense;AluSz_dup71366|chr13:28145758-28146060:-|1.4954711006093628|0.0056437079271841|8.05|151.0|3|1|sense;AluJb_dup36092|chr5:70989821-70990010:-|2.211852482793979|0.0693417533637569|5.0|151.0|3|1|sense;AluSx1_dup25199|chr4:39768165-39768474:+|1.1932509002753788|0.0538817463732776|4.47|151.0|7|2|sense;AluSz6_dup32715|chr12:104460382-104460691:+|2.5415694157534747|0.0141831729501157|7.49|151.0|6|2|sense;AluSx3_dup5156|chr2:233167723-233168033:+|1.2260831228194753|0.0390546979053994|4.97|151.0|8|2|sense;AluSz_dup39025|chr7:72989307-72989618:+|1.5143599537542864|0.0680873305748971|4.48|150.0|9|2|sense;AluJo_dup69910|chr19:7392772-7393077:+|2.764524251754442|0.0365277377957557|6.24|151.0|8|2|sense;AluSg_dup1035|chr1:44535130-44535438:-|1.845572950784751|0.0021093265732192|9.77|150.0|14|3|sense;AluSq2_dup43808|chr13:110898743-110899056:-|1.107493960111305|0.3788332716746631|1.55|151.0|5|1|sense;AluJb_dup108275|chr17:46342633-46342940:-|1.425766667789134|0.1358832703407998|3.39|151.0|12|2|sense;AluJb_dup45261|chr6:136786795-136786941:-|1.2117731304626962|0.0401334428352434|4.92|151.0|3|1|sense;AluJb_dup50607|chr7:100313579-100313914:+|3.5071432978935126|0.0240933012090079|7.19|151.0|4|1|sense;AluJb_dup77041|chr11:33265492-33265801:+|1.057086177188785|0.049297726296334|4.42|151.0|3|1|sense;AluJo_dup12508|chr3:11357729-11358038:+|1.3955841797624071|0.2233227274430739|2.64|151.0|14|3|sense;AluSx1_dup44191|chr7:77058499-77058796:-|2.4242579282989007|0.1447624007977476|4.07|151.0|4|1|sense;AluJb_dup10138|chr1:206701552-206701856:+|1.1185108817227272|0.0171765571603535|6.02|151.0|5|2|sense;AluSc5_dup3564|chrX:1521024-1521345:-|2.389651327194059|0.0188790483242322|6.98|151.0|13|3|sense;AluJb_dup82348|chr12:26992906-26993204:-|1.6527162077066784|0.10206108121506|4.02|151.0|11|3|sense;AluSx1_dup54678|chr9:89320075-89320380:+|1.1518237645606628|0.1699373286139705|2.76|151.0|5|1|sense;AluSg4_dup4846|chr12:123411553-123411822:-|1.0153808366057788|0.3501646797275068|1.54|151.0|10|3|sense;AluSg_dup30739|chr17:29785492-29785798:-|1.0075908180051814|0.0187094926981604|5.75|151.0|10|3|sense;AluSx_dup9214|chr1:228093643-228093977:+|1.6068117316030734|0.4193114290190456|1.94|151.0|15|3|sense;AluJr_dup51646|chr11:33871310-33871589:+|2.230395915189195|0.0108510949306341|7.68|151.0|10|2|sense;AluJo_dup70938|chr19:16082710-16083014:+|2.557266436045646|0.2008750745462186|3.67|151.0|4|1|sense;AluSx1_dup104066|chr19:7391959-7392263:+|2.058394455069572|0.0415866382726542|5.63|151.0|7|2|sense;AluSx1_dup104276|chr19:8466546-8466852:+|1.2264079480065166|0.1297349013206218|3.24|151.0|13|3|sense;AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|14|3|sense;AluSx1_dup106005|chr19:19421815-19422122:-|1.0628868882723146|0.0093431476381378|6.83|151.0|12|3|sense;AluJb_dup98031|chr15:72488963-72489269:+|1.2233406497126091|0.0236135647401553|5.7|151.0|9|2|sense;AluJb_dup40245|chr6:2294589-2294909:+|1.052068277035559|0.0112279956121626|6.55|151.0|7|2|sense;AluSx3_dup4731|chr2:196161512-196161815:-|1.961273574569656|0.0360400417345166|5.77|151.0|8|2|sense;AluSx1_dup77766|chr12:118343146-118343448:+|1.1643233172161231|0.003766657178577|8.27|151.0|4|1|sense;AluJb_dup47888|chr7:36510980-36511289:-|2.225694209149911|0.1916892971342379|3.54|150.0|7|2|sense;AluSx1_dup64481|chr10:28538302-28538604:+|1.4261729883873215|0.0730333155064278|4.29|151.0|12|3|sense;AluSx4_dup8883|chr16:29490453-29490752:+|1.245205846312603|0.258707306786323|2.27|151.0|13|3|sense;AluSx4_dup8813|chr16:21409921-21410219:+|2.074433437654286|0.3853346308038626|2.43|148.0|13|3|sense;AluSx_dup80828|chr13:50038987-50039262:-|1.0067487401797952|0.0722656185577349|3.8|151.0|5|1|sense;AluSx_dup91527|chr16:22413633-22413939:-|1.1631420900961085|0.1614630633755779|2.85|151.0|5|1|sense;AluSg4_dup1576|chr3:197952163-197952467:-|1.0002865386025903|0.2827240318970472|1.82|151.0|4|1|sense;AluY_dup60537|chr10:26447096-26447400:+|1.3493835914550465|0.0078956487571961|7.42|151.0|8|2|sense;AluSz_dup33058|chr6:42250990-42251293:-|1.1282600604337876|0.1482075645177749|2.93|150.0|9|2|sense;AluSz_dup54566|chrX:119627792-119628088:-|3.9988562726998|0.3533891028812816|3.5|151.0|15|3|sense;AluJo_dup41011|chrX:153619139-153619450:-|19.63834237078373|0.0015166892343507|13.66|141.0|12|3|sense;AluJo_dup30462|chr7:101855909-101856211:+|1.207889311784358|0.0206791888110396|5.87|151.0|12|3|sense;AluSg7_dup4356|chrX:2730745-2730959:+|1.2994123367100594|0.0542782094258138|4.58|151.0|2|1|sense;AluJb_dup14299|chr2:55298630-55298903:+|1.7533773040446907|0.2876788823710543|2.61|151.0|11|3|sense;AluSz_dup96890|chr19:55235838-55236132:-|1.1136530093741477|0.1385927883171475|3.01|151.0|6|1|sense;AluSp_dup5401|chr2:42971657-42971963:+|1.9052026511917683|0.0312065684190902|5.93|145.0|9|2|sense;AluJb_dup23372|chr3:49396850-49397161:+|1.1762635312578065|0.0028203465055192|8.7|151.0|11|3|sense;AluSq2_dup38575|chr11:78413803-78414115:+|1.1187455828972142|0.0104775109613208|6.74|151.0|9|2|sense;AluSx_dup57423|chr9:131396316-131396625:-|1.5737237315694512|0.0162210482549248|6.6|151.0|13|3|sense;AluJo_dup74877|chr20:41041196-41041459:+|1.1186909011275556|0.0267045216829881|5.39|151.0|4|1|sense;AluSq_dup18355|chr21:34874328-34874635:+|1.6318296067023028|0.0459538803038942|5.15|151.0|13|3|sense;AluSq_dup2599|chr2:178435234-178435407:+|1.2767636344228035|0.2830895642514354|2.17|151.0|4|2|sense;AluSx_dup70053|chr11:33877459-33877760:-|2.87268547091201|0.0052982181901923|9.08|151.0|3|1|sense;AluJb_dup3587|chr1:40386851-40387152:-|1.7444131868959591|0.0875026084081449|4.32|151.0|10|3|sense;AluSx_dup20237|chr3:50008547-50008850:-|1.1151269309956109|0.0089597832156314|6.96|151.0|4|1|sense;AluJb_dup113840|chr19:2292244-2292425:+|1.5910565974324509|0.1735916492752556|3.2|151.0|5|2|sense;AluJr_dup54031|chr11:128743108-128743429:+|1.484321950600551|0.0218258727063038|6.09|151.0|10|2|sense;AluJb_dup123001|chr21:34995436-34995739:-|4.2173821587075695|0.005878218043056|9.49|151.0|4|1|sense;AluY_dup35766|chr6:36093439-36093743:+|1.1704414663807636|0.1020392735028846|3.52|151.0|8|2|sense;AluJb_dup25986|chr3:128740610-128740923:+|1.523256898527929|0.0259747022751635|5.87|151.0|7|2|sense;AluSq2_dup9530|chr2:233090676-233090981:+|1.4776429277250442|0.0096494595470338|7.26|151.0|12|3|sense;AluSp_dup28519|chr10:45874667-45874981:-|1.0366965944079156|0.0165680273102419|5.97|151.0|6|2|sense;AluJb_dup77072|chr11:33887541-33887873:-|2.1753386334112497|0.0041169730027185|9.05|151.0|3|1|sense;AluSx1_dup2258|chr1:29177894-29178199:-|4.125212135652754|0.3579453877987234|3.53|151.0|9|2|sense;AluSp_dup45091|chr19:4913808-4914125:-|1.6017989105344173|0.0894723411631557|4.16|151.0|12|3|sense;AluSx1_dup29887|chr5:34184433-34184737:+|1.224143513199256|0.0396142564516206|4.95|151.0|11|3|sense;AluSq2_dup15563|chr4:168994746-168995056:-|1.1112800411118051|0.4884026382788179|1.19|151.0|11|2|sense;AluJb_dup97579|chr15:65763408-65763703:+|1.3433784874354306|0.0201336272578817|6.06|151.0|4|1|sense;AluSx1_dup98963|chr17:64335982-64336296:+|1.2660337996536|0.0716026007193729|4.14|151.0|6|2|sense;AluJb_dup88547|chr13:28181239-28181528:+|2.0446042340516395|0.0191047931469688|6.74|151.0|5|1|sense;AluSz_dup89482|chr17:78778021-78778330:+|1.0465275691990192|0.0132655212679489|6.3|150.0|12|3|sense;AluSz_dup73735|chr14:31005837-31006148:+|1.1558267823639812|0.0101367105738444|6.83|151.0|8|2|sense;AluSp_dup34866|chr13:28141444-28141759:-|1.341526690395866|0.0155593635712024|6.43|151.0|6|1|sense;AluJo_dup10622|chr2:168735591-168735910:+|1.1399517640810548|0.0098009675180931|6.86|151.0|6|1|sense;AluSq2_dup54614|chr19:1589058-1589371:+|1.0762494540455585|0.3092428470924084|1.8|151.0|5|1|sense;AluSx_dup87342|chr15:51926376-51926686:+|1.2036562852867807|0.0388213495952811|4.95|151.0|14|3|sense;AluSx3_dup28890|chr19:1588500-1588801:+|1.0518548671691377|0.3951104866366811|1.41|151.0|9|2|sense;AluJo_dup68287|chr18:32055015-32055320:+|1.1953313573709108|0.0112329905728879|6.73|151.0|3|1|sense;L1MCa_dup3384|chr7:156856730-156858971:+|1.6329415845992563|0.0176327684080404|6.53|150.0|79|3|sense;AluJo_dup23774|chr6:24846302-24846605:-|1.2203900739573337|0.0554329980583604|4.46|151.0|3|1|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1 ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron ENSG00000138767.13,CNOT6L,chr4,-,I9.1,77742473,77744717|28|5.46|2|intron MSMS UPN48_class_I_Rep_2 6 487.7913818359375 2 487.347669 972.680785 NaN NaN NaN NaN NaN NaN NaN 73.86 1 77.438 76.938 77.938 3.5779 0 0 0 0.40798 1 17359 17359 0 0 1 51410 3111 32135 32152 59148 59148 0.19335195744554312 VSKKKKKRS 9 Unmodified _VSKKKKKRS_ 0 0 0 AluJb_dup51659|chr7:128000360-128000667:-|1.0538766680967635|0.0194812247361383|5.76|151.0|11|2|sense AluJb_dup51659|chr7:128000360-128000667:-|1.0538766680967635|0.0194812247361383|5.76|151.0|11|2|sense AluJb_dup51659|chr7:128000360-128000667:-|1.0538766680967635|0.0194812247361383|5.76|151.0|11|2|sense MSMS UPN47_class_I_Rep_2 3 544.8660278320312 2 544.866757 1087.71896 NaN NaN NaN NaN NaN NaN NaN 73.41 1 76.715 76.215 77.215 3.3048 0 0 0 0.4029 1 18047 18047 0 0 1 51411 53 32136 32153 59149 59149 0.17861081659202682 VSKKQARN 8 Unmodified _VSKKQARN_ 0 0 0 TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 465.77716064453125 2 465.777608 929.540663 0.10142 4.7239E-05 -0.19302 -8.9904E-05 -0.091599 -4.2665E-05 465.77736692316955 74.191 0.22678 77.681 77.49 77.717 3.49 39 22 2 0 0 0 0.82752 1 17535 17535 0.69038 0 1 391660 51412 33467 32137 32154 59150 59150 0.07307411740168845 VSKKQARN 8 Unmodified _VSKKQARN_ 0 0 0 TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant MULTI-SECPEP UPN48_class_I_Rep_3 7 465.7778015136719 2 465.777608 929.540663 0.24835 0.00011568 -0.53861 -0.00025087 -0.29026 -0.0001352 465.7772342288609 72.549 0.2907 76.086 75.862 76.152 3.5373 43 24 3 0 0 0 0.72333 1 16936 16936 0.69038 0 1 173910 51413 33467 32137 32154 59151 59151 0.07307411740168845 VSKKQARN 8 Unmodified _VSKKQARN_ 0 0 0 TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 465.777608 929.540663 0.018455 8.596E-06 -0.036784 -1.7133E-05 -0.018329 -8.5371E-06 465.77755029724125 74.424 0.55905 77.736 77.403 77.962 3.3127 0.13607 9.3317E-05 NaN 0.69038 75 57 2 NaN NaN NaN NaN 0 NaN NaN 0 98319 51414 33467 32137 32154 0.07307411740168845 VSKKQARN 8 Unmodified _VSKKQARN_ 0 0 0 TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_3 4 2 465.777608 929.540663 -0.059001 -2.7481E-05 0.025058 1.1672E-05 -0.033942 -1.5809E-05 465.77753245735704 74.229 0.54514 77.466 77.275 77.821 3.2363 -0.13471 0.00015093 NaN 0.69038 83 58 2 NaN NaN NaN NaN 0 NaN NaN 0 88778 51415 33467 32137 32154 0.07307411740168845 VSKKQARN 8 Unmodified _VSKKQARN_ 0 0 0 TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant TOP2A|p.N583Kfs*12|1|0.06|ENSG00000131747|chr17:40406678-40406679|-/T|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_2 6 2 465.777608 929.540663 0.18749 8.7331E-05 -0.61896 -0.0002883 -0.43147 -0.00020097 465.77720806740376 73.941 0.37922 77.519 77.341 77.72 3.5779 -0.08178 -0.00044901 NaN 0.69038 56 41 2 NaN NaN NaN NaN 0 NaN NaN 0 110450 51416 33467 32137 32154 0.07307411740168845 VSKLNQGKP 9 Unmodified _VSKLNQGKP_ 0 0 0 ENSG00000132823|ENST00000255174|OSER1 ENSG00000132823|ENST00000255174|OSER1 ENSG00000132823|ENST00000255174|OSER1 MULTI-MSMS UPN46_class_I_Rep_3 1 485.7873229980469 2 485.787641 969.56073 0.026036 1.2648E-05 -0.19541 -9.4929E-05 -0.16938 -8.2281E-05 485.7872022916537 30.249 0.35946 30.249 30.015 30.374 0 49 30 2 0 0 0 0.38714 2 4882 4874;4882 8.7454 0.99131 1 47920 51417 2777 32138 32155 59152;59153 59153 0.07473162680139467 VSKRKKRKKKR 11 Unmodified _VSKRKKRKKKR_ 0 0 0 AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.33721923828125 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.13 1 70.626 70.126 71.126 3.4964 0 0 0 0.38417 1 15391 15391 0.08335 0 1 51418 63 32139 32156 59154 59154 0.28126550852630317 VSKRKKRKKKR 11 Unmodified _VSKRKKRKKKR_ 0 0 0 AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3369140625 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.313 1 70.81 70.31 71.31 3.4964 0 0 0 0.38417 1 15447 15447 0.08335 0 1 51419 63 32139 32156 59155 59155 0.28126550852630317 VSKRKKRKKKR 11 Unmodified _VSKRKKRKKKR_ 0 0 0 AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 481.3373718261719 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.444 1 70.941 70.441 71.441 3.4964 0 0 0 0.38417 1 15488 15488 0.08335 0 1 51420 63 32139 32156 59156 59156 0.28126550852630317 VSKRKKRKKKR 11 Unmodified _VSKRKKRKKKR_ 0 0 0 AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.33734130859375 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 66.98 1 70.488 69.988 70.988 3.5077 0 0 0 0.38417 1 15256 15256 0.08335 0 1 51421 63 32139 32156 59157 59157 0.28126550852630317 VSKRKKRKKKR 11 Unmodified _VSKRKKRKKKR_ 0 0 0 AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.241 1 70.749 70.249 71.249 3.5077 0 0 0 0.38417 1 15336 15336 0.08335 0 1 51422 63 32139 32156 59158 59158 0.28126550852630317 VSKRKKRKKKR 11 Unmodified _VSKRKKRKKKR_ 0 0 0 AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense AluJb_dup74802|chr10:103142395-103142697:+|1.891233918549052|0.2815906600669546|2.75|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 481.3371887207031 3 481.335316 1440.98412 NaN NaN NaN NaN NaN NaN NaN 67.407 1 70.915 70.415 71.415 3.5077 0 0 0 0.38417 1 15386 15386 0.08335 0 1 51423 63 32139 32156 59159 59159 0.28126550852630317 VSKRWTFEEGI 11 Unmodified _VSKRWTFEEGI_ 0 0 0 ENST00000554429.5_1_14:45565874-45579180:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39 ENST00000554429.5_1_14:45565874-45579180:+|nuORF ENST00000554429.5_1_14:45565874-45579180:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 451.57330322265625 3 451.238343 1350.6932 0.079598 3.5918E-05 -0.72024 -0.000325 -0.64065 -0.00028908 451.2379286346477 48.422 0.57574 52.056 51.821 52.397 3.6339 65 43 2 0 0 0 0.65891 1 9584 9584 2.4348 0.69251 1 121270 51424 5093 32140 32157 59160 59160 0.03188142626277113 VSKSPIYI 8 Unmodified _VSKSPIYI_ 0 0 0 REV__L1MB1_dup3969|chr10:79818674-79819529:-|1.3433784874354306|0.0138770549850418|6.6|149.0|48|2|anti-sense REV__L1MB1_dup3969|chr10:79818674-79819529:-|1.3433784874354306|0.0138770549850418|6.6|149.0|48|2|anti-sense MSMS UPN46_class_I_Rep_3 1 453.43408203125 2 453.768386 905.522219 NaN NaN NaN NaN NaN NaN NaN 72.053 1 72.053 71.553 72.553 0 0 0 0 0.40738 1 16633 16633 0.79363 0 1 + 51425 25362 32141 32158 59161 59161 0.06567857045604342 VSKTQNPPEG 10 Unmodified _VSKTQNPPEG_ 0 0 0 LTR12__dup296|chr9:76477879-76478576:+|1.0880195527590857|0.091939763216272|3.56|151.0|19|2|sense LTR12__dup296|chr9:76477879-76478576:+|1.0880195527590857|0.091939763216272|3.56|151.0|19|2|sense LTR12__dup296|chr9:76477879-76478576:+|1.0880195527590857|0.091939763216272|3.56|151.0|19|2|sense MSMS UPN47_class_I_Rep_3 4 528.7833251953125 2 528.769645 1055.52474 NaN NaN NaN NaN NaN NaN NaN 83.109 1 86.459 85.959 86.959 3.35 0 0 0 0.53105 1 20840 20840 2.4985 0.19575 1 51426 15524 32142 32159 59162 59162 -0.0008033928738768736 VSKVLYKQ 8 Unmodified _VSKVLYKQ_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.Y6084Vfs*6|1|0.23|ENSG00000183091|chr2:151508104-151508105|-/T|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-SECPEP UPN46_class_I_Rep_3 1 482.7952880859375 2 482.794935 963.575317 -0.15372 -7.4214E-05 -0.19327 -9.3309E-05 -0.34698 -0.00016752 482.7952514847908 22.462 0.075993 22.462 22.417 22.493 0 6 4 2 0 0 0 0.72333 1 2676 2676 0.69038 0 1 46879 51427 4982 32143 32160 59163 59163 0.09207234828261335 VSKYKQAL 8 Unmodified _VSKYKQAL_ 0 0 0 L1MB2_dup6766|chr14:90926717-90927888:+|1.0915327014028464|0.040082381710328|4.77|151.0|20|2|sense L1MB2_dup6766|chr14:90926717-90927888:+|1.0915327014028464|0.040082381710328|4.77|151.0|20|2|sense L1MB2_dup6766|chr14:90926717-90927888:+|1.0915327014028464|0.040082381710328|4.77|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 468.7789611816406 2 468.779285 935.544017 -0.3358 -0.00015742 0.17619 8.2596E-05 -0.15961 -7.482E-05 468.7792878306449 32.556 0.79044 36.269 35.96 36.75 3.7131 97 64 2 0 0 0 0.82752 1 5749 5749 1.8442 1.8442 1 132620 51428 10271 32144 32161 59164 59164 0.07366661794185347 VSLAESLLIF 10 Unmodified _VSLAESLLIF_ 0 0 0 L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|60|1|anti-sense L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|60|1|anti-sense L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|60|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.3211669921875 2 546.320983 1090.62741 0.46442 0.00025372 -0.29152 -0.00015926 0.1729 9.4461E-05 546.3207849042525 79.689 0.65318 83.238 82.831 83.484 3.5487 141 76 3 0 0 0 0.33585 2 19022 19022;19056 25.399 0 1 389160 51429 14092 32145 32162 59165;59166 59165 0.0857235345135905 VSLAESLLIF 10 Unmodified _VSLAESLLIF_ 0 0 0 L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|60|1|anti-sense L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|60|1|anti-sense L1PA16_dup4929|chr5:154422886-154424526:+|2.0873158328135437|0.3371739977368927|2.63|151.0|60|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.32080078125 2 546.320983 1090.62741 0.48163 0.00026312 -0.26898 -0.00014695 0.21265 0.00011618 546.3207841519636 79.436 0.46748 83.069 82.785 83.252 3.6331 74 51 2 0 0 0 0.33585 1 18885 18885 25.399 0 1 373220 51430 14092 32145 32162 59167 59167 0.0857235345135905 VSLALLLFRCD 11 Unmodified _VSLALLLFRCD_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 625.8544311523438 2 625.352291 1248.69003 0.49484 0.00030945 -1.046 -0.00065409 -0.55111 -0.00034464 625.3526891560826 107.77 0.079567 111.45 111.41 111.49 3.6783 22 7 5 0 0 0 0.48412 1 25491 25491 8.1555 1.9497 1 5593900 + 51431 27410 32146 32163 59168 59168 0.07563176247913361 VSLALLLFRCD 11 Unmodified _VSLALLLFRCD_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 625.8546142578125 2 625.352291 1248.69003 0.59759 0.00037371 -0.10597 -6.6268E-05 0.49162 0.00030744 625.3522616552118 107.79 0.12336 111.47 111.42 111.54 3.6813 16 10 3 0 0 0 0.295 2 25452 25444;25452 16.149 3.9084 1 5944600 + 51432 27410 32146 32163 59169;59170 59170 0.07563176247913361 VSLALLLFRCD 11 Unmodified _VSLALLLFRCD_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 625.4323120117188 2 625.352291 1248.69003 0.59759 0.00037371 -0.10597 -6.6268E-05 0.49162 0.00030744 625.3522616552118 107.79 0.12336 111.47 111.42 111.54 3.6813 16 10 3 0 0 0 22.551 1 25465 25465 12.241 2.8575 1 5944600 + 51433 27410 32146 32163 59171 59171 0.07563176247913361 VSLALLLFRCD 11 Unmodified _VSLALLLFRCD_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 625.352291 1248.69003 0.63469 0.00039691 -0.49823 -0.00031157 0.13647 8.5339E-05 625.3528953366762 107.8 0.13866 111.34 111.26 111.4 3.5345 -0.076184 -0.00013292 NaN 16.149 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5005200 + 51434 27410 32146 32163 0.07563176247913361 VSLALLLFRCD 11 Unmodified _VSLALLLFRCD_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 625.352291 1248.69003 0.42755 0.00026737 -0.8024 -0.00050178 -0.37485 -0.00023441 625.8539235928514 107.8 0.1382 111.43 111.36 111.5 3.6313 0.015589 -0.00051335 NaN 16.149 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 7161500 + 51435 27410 32146 32163 0.07563176247913361 VSLALLLFRCD 11 Unmodified _VSLALLLFRCD_ 0 0 0 REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense REV__L1MD2_dup5615|chr9:94890496-94892439:-|1.3807502494764656|0.03239746907149|5.41|151.0|93|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 625.352291 1248.69003 0.49484 0.00030945 -1.046 -0.00065409 -0.55111 -0.00034464 625.3526891560826 107.77 0.079567 111.45 111.41 111.49 3.6783 0.029834 -0.00081796 NaN 16.149 22 7 5 NaN NaN NaN NaN 0 NaN NaN 0 5593900 + 51436 27410 32146 32163 0.07563176247913361 VSLALRRE 8 Unmodified _VSLALRRE_ 0 0 0 REV__MLT1K_dup4085|chr3:196642243-196642590:-|2.922629791791141|0.0188388736727443|7.28|151.0|1|1|sense REV__MLT1K_dup4085|chr3:196642243-196642590:-|2.922629791791141|0.0188388736727443|7.28|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 472.28778076171875 2 472.287808 942.561064 0.20441 9.654E-05 -0.05093 -2.4053E-05 0.15348 7.2486E-05 472.28772845661115 86.28 1.1071 89.713 89.293 90.4 3.4329 483 151 5 0 0 0 0.82752 1 21555 21555 2.5775 0 1 6101700 + 51437 31793 32147 32164 59172 59172 0.08748582399982752 VSLALRRE 8 Unmodified _VSLALRRE_ 0 0 0 REV__MLT1K_dup4085|chr3:196642243-196642590:-|2.922629791791141|0.0188388736727443|7.28|151.0|1|1|sense REV__MLT1K_dup4085|chr3:196642243-196642590:-|2.922629791791141|0.0188388736727443|7.28|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.2878723144531 2 472.287808 942.561064 0.09819 4.6374E-05 -0.014937 -7.0547E-06 0.083252 3.9319E-05 472.2877322347436 87.127 0.12243 90.746 90.679 90.801 3.6187 25 15 3 0 0 0 0.82752 1 20875 20875 2.5775 0 1 186600 + 51438 31793 32147 32164 59173 59173 0.08748582399982752 VSLALRRE 8 Unmodified _VSLALRRE_ 0 0 0 REV__MLT1K_dup4085|chr3:196642243-196642590:-|2.922629791791141|0.0188388736727443|7.28|151.0|1|1|sense REV__MLT1K_dup4085|chr3:196642243-196642590:-|2.922629791791141|0.0188388736727443|7.28|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.2878112792969 2 472.287808 942.561064 0.2273 0.00010735 -0.10844 -5.1214E-05 0.11886 5.6135E-05 472.2876650900646 86.845 0.41032 90.636 90.484 90.894 3.7905 83 58 2 0 0 0 0.82752 1 20647 20647 2.5775 0 1 245750 + 51439 31793 32147 32164 59174 59174 0.08748582399982752 VSLAPRGGR 9 Unmodified _VSLAPRGGR_ 0 0 0 REV__ENST00000573314.5_1_15:65903254-65903431:-|nuORF REV__ENST00000573314.5_1_15:65903254-65903431:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 456.77197265625 2 456.772326 911.530098 0.21241 9.7024E-05 -0.13814 -6.3098E-05 0.074273 3.3926E-05 456.77216418211856 80.624 0.52743 84.287 84.14 84.667 3.6635 92 69 2 0 0 0 0.33654 1 19076 19076 11.64 0 1 445190 + 51440 23098 32148 32165 59175 59175 0.07079429085752054 VSLAPRGGR 9 Unmodified _VSLAPRGGR_ 0 0 0 REV__ENST00000573314.5_1_15:65903254-65903431:-|nuORF REV__ENST00000573314.5_1_15:65903254-65903431:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 456.772326 911.530098 0.19892 9.086E-05 -0.30622 -0.00013987 -0.1073 -4.9013E-05 456.77212811937767 84.216 0.27915 84.216 84.035 84.314 0 -0.047528 -0.0001021 NaN 11.64 49 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1363200 + 51441 23098 32148 32165 0.07079429085752054 VSLAVDLLL 9 Unmodified _VSLAVDLLL_ 0 0 0 REV__MLT1L_dup10935|chr19:37928761-37929161:-|1.122117341419466|0.0072170161499917|7.28|150.0|10|3|sense REV__MLT1L_dup10935|chr19:37928761-37929161:-|1.122117341419466|0.0072170161499917|7.28|150.0|10|3|sense MSMS UPN47_class_I_Rep_2 3 471.795654296875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 49.252 1 52.598 52.098 53.098 3.3465 0 0 0 0.38299 1 10722 10722 4.756 0 1 + 51442 31797 32149 32166 59176 59176 0.10660699251184269 VSLDCTIAL 9 Unmodified _VSLDCTIAL_ 0 0 0 AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 467.74908447265625 2 467.749336 933.484119 0.063986 2.9929E-05 -0.33562 -0.00015698 -0.27163 -0.00012706 467.7490304534871 68.438 0.77637 71.803 71.445 72.222 3.3646 86 60 2 0 0 0 0.33654 1 16569 16569 11.64 0 1 113230 51443 259 32150 32167 59177 59177 0.014716030686258819 VSLDCTIAL 9 Unmodified _VSLDCTIAL_ 0 0 0 AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 467.749336 933.484119 -0.011804 -5.5213E-06 -0.10842 -5.0714E-05 -0.12023 -5.6235E-05 467.74911883333607 68.808 1.277 72.078 71.339 72.616 3.2696 0.15282 7.3603E-05 NaN 11.64 141 109 2 NaN NaN NaN NaN 0 NaN NaN 0 85919 51444 259 32150 32167 0.014716030686258819 VSLDCTIAL 9 Unmodified _VSLDCTIAL_ 0 0 0 AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense AluSq2_dup42577|chr13:28008468-28008777:-|1.697209798931555|0.0067578127892654|7.97|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 467.749336 933.484119 -0.051462 -2.4071E-05 -0.13152 -6.1517E-05 -0.18298 -8.5588E-05 467.74919328926774 68.697 0.77457 71.895 71.245 72.02 3.1977 -0.030182 5.1996E-05 NaN 11.64 79 54 2 NaN NaN NaN NaN 0 NaN NaN 0 89437 51445 259 32150 32167 0.014716030686258819 VSLKLLKFL 9 Unmodified _VSLKLLKFL_ 0 0 0 L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|52|3|sense L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|52|3|sense L1PB3_dup2606|chr11:119256551-119257903:-|1.6246093385692462|0.0234983981420707|6.11|151.0|52|3|sense MSMS UPN48_class_I_Rep_1 5 530.8623046875 2 530.860078 1059.7056 NaN NaN NaN NaN NaN NaN NaN 40.391 1 43.896 43.396 44.396 3.5048 0 0 0 0.40098 1 7242 7242 0.45834 0 1 51446 15273 32151 32168 59178 59178 0.17813830827276433 VSLKRPLG 8 Unmodified _VSLKRPLG_ 0 0 0 ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF ENSG00000166526|ENST00000299667|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 MULTI-SECPEP UPN47_class_I_Rep_3 4 435.3000793457031 2 435.281995 868.549437 -0.42837 -0.00018646 -0.75238 -0.0003275 -1.1807 -0.00051396 435.2817105397095 63.373 0.075272 66.542 66.509 66.585 3.1698 6 4 2 0 0 0 0.72333 1 15098 15098 4.756 0 1 26658 51447 4247 32152 32169 59179 59179 0.10990385376658196 VSLLFLFFHMP 11 Unmodified _VSLLFLFFHMP_ 0 0 0 REV__ENSG00000176922|ENST00000322101|OR51S1 REV__ENSG00000176922|ENST00000322101|OR51S1 MSMS UPN47_class_I_Rep_3 4 450.9134521484375 3 450.914143 1349.7206 NaN NaN NaN NaN NaN NaN NaN 33.495 1 36.77 36.27 37.27 3.2748 0 0 0 0.38417 1 5978 5978 0.45452 0 1 + 51448 20601 32153 32170 59180 59180 0.059729546329435834 VSLLKIFIK 9 Unmodified _VSLLKIFIK_ 0 0 0 HAL1_dup21240|chr18:50937406-50938045:+|1.9715067215752704|0.4820735680070108|2.03|151.0|2|1|sense HAL1_dup21240|chr18:50937406-50938045:+|1.9715067215752704|0.4820735680070108|2.03|151.0|2|1|sense HAL1_dup21240|chr18:50937406-50938045:+|1.9715067215752704|0.4820735680070108|2.03|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 530.8599243164062 2 530.860078 1059.7056 NaN NaN NaN NaN NaN NaN NaN 102.23 1 105.71 105.21 106.21 3.4873 0 0 0 0.4029 1 25144 25144 0 0 1 51449 7870 32154 32171 59181 59181 0.1781383082723096 VSLLQNNR 8 Unmodified _VSLLQNNR_ 0 0 0 ERVL-B4-int_dup552|chr3:8856391-8858836:+|1.0861959993399335|0.0343322751393457|4.98|151.0|151|3|anti-sense ERVL-B4-int_dup552|chr3:8856391-8858836:+|1.0861959993399335|0.0343322751393457|4.98|151.0|151|3|anti-sense ERVL-B4-int_dup552|chr3:8856391-8858836:+|1.0861959993399335|0.0343322751393457|4.98|151.0|151|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 472.2696533203125 2 472.269616 942.524678 0.22421 0.00010589 -0.15708 -7.4186E-05 0.067129 3.1703E-05 472.26937955996937 78.491 0.3812 78.491 78.383 78.764 0 54 40 2 0 0 0 0.82752 1 18403 18403 0.69038 0 1 59601 51450 7738 32155 32172 59182 59182 0.05111705503270514 VSLPPPKKNQ 10 Unmodified _VSLPPPKKNQ_ 0 0 0 ENST00000533762.5_3_1:26149577-26149787:+|nuORF;ENST00000464008.6_1_1:26147049-26149787:+|nuORF;ENST00000528624.5_1_1:26146700-26149787:+|nuORF ENST00000533762.5_3_1:26149577-26149787:+|nuORF ENST00000533762.5_3_1:26149577-26149787:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 554.3300170898438 2 554.329673 1106.64479 0.50277 0.0002787 -0.036988 -2.0503E-05 0.46578 0.0002582 554.3294684129388 107.87 0.33831 111.4 111.34 111.68 3.5382 83 38 3 0 0 0 0.54466 1 26357 26357 6.2058 0.47393 1 21917000 51451 6880 32156 32173 59183 59183 0.09573693777042536 VSLPPPKKNQ 10 Unmodified _VSLPPPKKNQ_ 0 0 0 ENST00000533762.5_3_1:26149577-26149787:+|nuORF;ENST00000464008.6_1_1:26147049-26149787:+|nuORF;ENST00000528624.5_1_1:26146700-26149787:+|nuORF ENST00000533762.5_3_1:26149577-26149787:+|nuORF ENST00000533762.5_3_1:26149577-26149787:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 554.3292236328125 2 554.329673 1106.64479 0.48829 0.00027067 -0.047164 -2.6144E-05 0.44112 0.00024453 554.3294830747336 107.88 0.48497 111.51 111.42 111.91 3.6313 107 40 5 0 0 0 0.54466 1 26073 26073 6.2058 0.47393 1 44523000 51452 6880 32156 32173 59184 59184 0.09573693777042536 VSLPPSIVIQK 11 Unmodified _VSLPPSIVIQK_ 0 0 0 REV__ENSG00000204186|ENST00000374423|ZDBF2 REV__ENSG00000204186|ENST00000374423|ZDBF2 MSMS UPN48_class_I_Rep_1 5 590.8677978515625 2 590.868631 1179.72271 NaN NaN NaN NaN NaN NaN NaN 96.559 1 100.17 99.672 100.67 3.6124 0 0 0 0.38417 1 23267 23267 2.9952 0 1 + 51453 21179 32157 32174 59185 59185 0.140037066423929 VSLPPSIVIQK 11 Unmodified _VSLPPSIVIQK_ 0 0 0 REV__ENSG00000204186|ENST00000374423|ZDBF2 REV__ENSG00000204186|ENST00000374423|ZDBF2 MSMS UPN48_class_I_Rep_3 7 590.8666381835938 2 590.868631 1179.72271 NaN NaN NaN NaN NaN NaN NaN 95.799 1 99.707 99.207 100.21 3.9084 0 0 0 0.38417 1 22706 22706 2.7352 0 1 + 51454 21179 32157 32174 59186 59186 0.140037066423929 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN46_class_I_Rep_3 1 520.35302734375 2 520.352951 1038.69135 0.32738 0.00017035 0.51559 0.00026829 0.84297 0.00043864 520.3529794514199 108.78 0.89362 108.78 108.52 109.41 0 104 75 2 0 0 0 0.46869 1 26685 26685 3.9444 0 1 6107900 51455 1612 32158 32175 59187 59187 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN47_class_I_Rep_2 3 520.3524780273438 2 520.352951 1038.69135 0.24172 0.00012578 0.83418 0.00043407 1.0759 0.00055985 520.3533258081442 109.36 0.63431 112.89 112.81 113.45 3.5307 114 87 2 0 0 0 0.46869 1 26685 26685 3.9444 0 1 1126800 51456 1612 32158 32175 59188 59188 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN48_class_I_Rep_2 6 520.3533325195312 2 520.352951 1038.69135 0.36797 0.00019148 -0.30237 -0.00015734 0.065604 3.4137E-05 520.3526369252817 108.75 0.34618 112.42 112.29 112.64 3.6746 59 33 2 0 0 0 0.46869 1 25867 25867 3.9444 0 1 5963800 51457 1612 32158 32175 59189 59189 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN48_class_I_Rep_2 6 520.3529663085938 2 520.352951 1038.69135 0.36816 0.00019157 -0.070129 -3.6492E-05 0.29803 0.00015508 520.3527818145362 108.99 0.17864 112.66 112.6 112.78 3.6715 39 23 2 0 0 0 0.46869 1 25920 25920 3.9444 0 1 4194900 51458 1612 32158 32175 59190 59190 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN48_class_I_Rep_3 7 520.3530883789062 2 520.352951 1038.69135 0.39115 0.00020353 0.36083 0.00018776 0.75198 0.00039129 520.3529887430533 108.22 0.60649 111.9 111.67 112.27 3.6813 176 63 4 0 0 0 0.46869 1 25529 25529 3.9444 0 1 32838000 51459 1612 32158 32175 59191 59191 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN48_class_I_Rep_3 7 520.3534545898438 2 520.352951 1038.69135 0.38895 0.00020239 -0.16859 -8.7727E-05 0.22036 0.00011467 520.3527312939021 108.62 0.56184 112.3 112.25 112.81 3.6751 93 63 2 0 0 0 0.46869 1 25837 25837 3.9444 0 1 14865000 51460 1612 32158 32175 59192 59192 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS UPN48_class_I_Rep_3 7 520.353515625 2 520.352951 1038.69135 0.38969 0.00020278 0.36315 0.00018897 0.75284 0.00039174 520.3529768067303 109.45 0.58108 113.12 113.05 113.63 3.67 146 79 2 0 0 0 0.46869 1 25996 25996 3.9444 0 1 878430 51461 1612 32158 32175 59193 59193 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN47_class_I_Rep_1 2 2 520.352951 1038.69135 0.41067 0.0002137 -0.12396 -6.4502E-05 0.28672 0.00014919 520.8542260436609 108.98 0.041298 112.58 112.55 112.59 3.6046 0.058185 0.00010953 NaN 3.9444 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 513570 51462 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 520.352951 1038.69135 0.41107 0.0002139 0.13393 6.9689E-05 0.54499 0.00028359 520.3528760218846 108.27 0.83051 111.9 111.5 112.33 3.6355 0.054163 -0.0001423 NaN 3.9444 206 79 4 NaN NaN NaN NaN 0 NaN NaN 0 12163000 51463 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN47_class_I_Rep_2 3 2 520.352951 1038.69135 0.2414 0.00012561 0.20587 0.00010713 0.44728 0.00023274 520.352834159618 109.04 0.043106 112.57 112.55 112.59 3.5333 0.045402 0.00045279 NaN 3.9444 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2127500 51464 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN47_class_I_Rep_2 3 2 520.352951 1038.69135 0.2421 0.00012598 1.1119 0.00057856 1.354 0.00070453 520.3534177183552 109.94 0.033127 113.47 113.45 113.48 3.5307 0.26412 0.00086942 NaN 3.9444 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 165800 51465 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 520.352951 1038.69135 0.37581 0.00019555 0.37188 0.00019351 0.74769 0.00038906 520.3529896669197 108.19 0.46506 111.73 111.4 111.86 3.5382 -0.12233 0.00010534 NaN 3.9444 133 50 4 NaN NaN NaN NaN 0 NaN NaN 0 27860000 51466 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN47_class_I_Rep_3 4 2 520.352951 1038.69135 0.37544 0.00019536 0.61446 0.00031974 0.98991 0.0005151 520.3531406683109 109.6 0.27012 113.13 112.98 113.25 3.5347 -0.074544 0.00035177 NaN 3.9444 50 35 2 NaN NaN NaN NaN 0 NaN NaN 0 631900 51467 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN47_class_I_Rep_3 4 2 520.352951 1038.69135 0.37531 0.00019529 0.65734 0.00034205 1.0327 0.00053734 520.3533021490329 109.36 0.14732 112.89 112.84 112.98 3.5347 -0.054041 0.00022709 NaN 3.9444 21 19 2 NaN NaN NaN NaN 0 NaN NaN 0 840230 51468 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 520.352951 1038.69135 0.27004 0.00014052 0.2045 0.00010641 0.47454 0.00024693 520.3529139965059 108.14 0.3243 111.77 111.51 111.84 3.6313 -0.082609 -6.8858E-05 NaN 3.9444 67 28 3 NaN NaN NaN NaN 0 NaN NaN 0 8098000 51469 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN48_class_I_Rep_1 5 2 520.352951 1038.69135 0.26959 0.00014028 0.14845 7.7248E-05 0.41804 0.00021753 520.3530519967798 109.5 0.27003 113.14 112.94 113.21 3.6321 -0.070197 -0.0001332 NaN 3.9444 55 33 2 NaN NaN NaN NaN 0 NaN NaN 0 535530 51470 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN48_class_I_Rep_1 5 2 520.352951 1038.69135 0.26975 0.00014037 0.32221 0.00016766 0.59197 0.00030803 520.3529215201279 109.62 0.18896 113.25 113.2 113.39 3.6321 0.30421 -0.00012169 NaN 3.9444 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 504130 51471 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 520.352951 1038.69135 0.36864 0.00019182 0.28957 0.00015068 0.6582 0.0003425 520.3529377212966 108.28 0.50111 111.95 111.72 112.22 3.6746 0.10225 1.9675E-05 NaN 3.9444 184 58 4 NaN NaN NaN NaN 0 NaN NaN 0 30191000 51472 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN48_class_I_Rep_2 6 2 520.352951 1038.69135 0.36798 0.00019148 0.1276 6.6399E-05 0.49558 0.00025788 520.3529446551988 109.5 0.78339 113.17 113.02 113.81 3.6715 -0.032406 -0.0001549 NaN 3.9444 142 103 2 NaN NaN NaN NaN 0 NaN NaN 0 1051200 51473 1612 32158 32175 0.17355178398975113 VSLPVRKKI 9 Unmodified _VSLPVRKKI_ 0 0 0 nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI nc|ENSG00000102384|Q92674-2|CENPI nc|ENSG00000102384|Q92674-2|CENPI MULTI-MATCH UPN48_class_I_Rep_3 7 2 520.352951 1038.69135 0.38911 0.00020247 0.091546 4.7636E-05 0.48065 0.00025011 520.3530493745136 109.37 0.13878 113.05 112.93 113.07 3.6751 0.097317 -0.00036174 NaN 3.9444 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1044700 51474 1612 32158 32175 0.17355178398975113 VSLQLVITK 9 Unmodified _VSLQLVITK_ 0 0 0 REV__ENST00000531486.1_1_17:45697051-45697186:+|nuORF REV__ENST00000531486.1_1_17:45697051-45697186:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 500.82293701171875 2 500.823692 999.632832 0.19986 0.0001001 -0.19393 -9.7125E-05 0.0059347 2.9722E-06 500.82355496544477 44.066 0.82202 47.579 47.324 48.146 3.5132 86 59 2 0 0 0 0.36392 1 8427 8427 10.074 0 1 130570 + 51475 22856 32159 32176 59194 59194 0.13300077033829893 VSLQLVITK 9 Unmodified _VSLQLVITK_ 0 0 0 REV__ENST00000531486.1_1_17:45697051-45697186:+|nuORF REV__ENST00000531486.1_1_17:45697051-45697186:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 500.8236389160156 2 500.823692 999.632832 0.21479 0.00010757 -0.052772 -2.643E-05 0.16201 8.1141E-05 500.82362818975685 44.027 0.39721 47.789 47.677 48.074 3.7617 41 30 2 0 0 0 0.36392 1 8383 8383 10.074 0 1 203520 + 51476 22856 32159 32176 59195 59195 0.13300077033829893 VSLRRTARRT 10 Unmodified _VSLRRTARRT_ 0 0 0 ENST00000466599.1_1_7:133979532-133979616:-|nuORF ENST00000466599.1_1_7:133979532-133979616:-|nuORF ENST00000466599.1_1_7:133979532-133979616:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 608.3766479492188 2 608.373269 1214.73199 0.55591 0.0003382 4.2776 0.0026024 4.8336 0.0029406 608.3754759118361 107.78 0.14664 111.46 111.44 111.58 3.6813 14 12 2 0 0 0 0.52562 1 25449 25449 8.7454 2.0222 1 4314200 51477 6901 32160 32177 59196 59196 0.1332091277129166 VSLSDAPPR 9 Unmodified _VSLSDAPPR_ 0 0 0 REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron MSMS UPN48_class_I_Rep_1 5 471.2561950683594 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 33.367 1 36.887 36.387 37.387 3.5201 0 0 0 0.31276 1 5196 5196 10.074 0 1 + 51478 19814 32161 32178 59197 59197 0.025165968920873638 VSLSDAPPR 9 Unmodified _VSLSDAPPR_ 0 0 0 REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron MSMS UPN48_class_I_Rep_2 6 471.2568359375 2 471.256174 940.497795 NaN NaN NaN NaN NaN NaN NaN 33.236 1 36.897 36.397 37.397 3.6607 0 0 0 0.31276 1 5224 5224 10.074 0 1 + 51479 19814 32161 32178 59198 59198 0.025165968920873638 VSLSDAPPR 9 Unmodified _VSLSDAPPR_ 0 0 0 REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron REV__ENSG00000157020.18,SEC13,chr3,-,I7.1,10304173,10305032|32|15.67|1|intron MULTI-MSMS UPN48_class_I_Rep_3 7 471.2560729980469 2 471.256174 940.497795 0.10689 5.0374E-05 -0.50877 -0.00023976 -0.40188 -0.00018939 471.2557624340253 33.109 0.37368 36.798 36.547 36.92 3.6896 52 41 2 0 0 0 0.23293 3 5130 5050;5094;5130 18.146 0 1 61194 + 51480 19814 32161 32178 59199;59200;59201 59201 0.025165968920873638 VSLTVVAVWTV 11 Unmodified _VSLTVVAVWTV_ 0 0 0 REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P MSMS UPN46_class_I_Rep_3 1 587.3493041992188 2 587.347532 1172.68051 NaN NaN NaN NaN NaN NaN NaN 38.369 1 38.369 37.869 38.869 0 0 0 0 0.38417 1 7299 7299 1.1933 0 1 + 51481 31986 32162 32179 59202 59202 0.10107731234029416 VSLVHRHVA 9 Unmodified _VSLVHRHVA_ 0 0 0 REV__ENSG00000100983|ENST00000651619|GSS REV__ENSG00000100983|ENST00000651619|GSS MSMS UPN47_class_I_Rep_3 4 509.303466796875 2 509.30125 1016.58795 NaN NaN NaN NaN NaN NaN NaN 66.06 1 69.245 68.745 69.745 3.1853 0 0 0 0.38478 1 15907 15907 4.3292 0 1 + 51482 18139 32163 32180 59203 59203 0.08031691011171915 VSLVRRQL 8 Unmodified _VSLVRRQL_ 0 0 0 REV__L1PA3_dup512|chr1:169275509-169279839:-|1.048869413170849|0.1198277288768944|3.13|151.0|91|3|sense REV__L1PA3_dup512|chr1:169275509-169279839:-|1.048869413170849|0.1198277288768944|3.13|151.0|91|3|sense MSMS UPN47_class_I_Rep_3 4 485.8119812011719 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 87.367 1 90.747 90.247 91.247 3.3801 0 0 0 0.40746 1 21890 21890 0.69038 0 1 + 51483 29540 32164 32181 59204 59204 0.12232861670997863 VSNGSVVHR 9 Unmodified _VSNGSVVHR_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MSMS UPN46_class_I_Rep_3 1 477.759765625 2 477.759415 953.504277 -0.34443 -0.00016456 -0.53247 -0.00025439 -0.87691 -0.00041895 477.75899549849805 14.34 0.31852 14.34 14.283 14.602 0 43 37 2 0 0 0 0.19092 2 612 603;612 21.59 12.845 1 32205 51484 3461 32165 32182 59205;59206 59206 0.02566534843469981 VSNHVFLMY 9 Unmodified _VSNHVFLMY_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS UPN47_class_I_Rep_3 4 555.2987670898438 2 555.276052 1108.53755 NaN NaN NaN NaN NaN NaN NaN 45.421 1 48.665 48.165 49.165 3.2441 0 0 0 0.381 1 9622 9622 5.2307 2.3415 1 + 51485 17652 32166 32183 59207 59207 -0.012375994288504444 VSNRFRLV 8 Unmodified _VSNRFRLV_ 0 0 0 ENST00000419038.2_1_2:63870633-63870933:-|nuORF ENST00000419038.2_1_2:63870633-63870933:-|nuORF ENST00000419038.2_1_2:63870633-63870933:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.30078125 2 495.795801 989.577048 0.12362 6.1291E-05 1.7536 0.00086942 1.8772 0.00093071 495.79613013097094 68.47 0.2793 71.835 71.713 71.992 3.3646 32 20 2 0 0 0 0.82752 1 16580 16580 2.3027 0 1 192250 51486 6669 32167 32184 59208 59208 0.08184288636903148 VSNRFRLV 8 Unmodified _VSNRFRLV_ 0 0 0 ENST00000419038.2_1_2:63870633-63870933:-|nuORF ENST00000419038.2_1_2:63870633-63870933:-|nuORF ENST00000419038.2_1_2:63870633-63870933:-|nuORF MSMS UPN47_class_I_Rep_2 3 495.7961730957031 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 69.515 1 72.791 72.291 73.291 3.2761 0 0 0 0.40746 1 16885 16885 0.69038 0 1 51487 6669 32167 32184 59209 59209 0.08184288636903148 VSNVFQELAS 10 Unmodified _VSNVFQELAS_ 0 0 0 REV__ENSG00000141030|ENST00000268717|COPS3 REV__ENSG00000141030|ENST00000268717|COPS3 MULTI-MSMS UPN47_class_I_Rep_2 3 547.2799072265625 2 547.279846 1092.54514 0.023867 1.3062E-05 -0.078073 -4.2728E-05 -0.054206 -2.9666E-05 547.2797364113222 20.784 0.68676 24.191 23.93 24.617 3.4074 134 72 2 0 0 0 0.56118 1 2265 2265 2.9952 0 1 84681 + 51488 19364 32168 32185 59210 59210 0.002568313724395921 VSPHLCRF 8 Unmodified _VSPHLCRF_ 0 0 0 L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|180|1|anti-sense L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|180|1|anti-sense L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|180|1|anti-sense MSMS UPN48_class_I_Rep_3 7 479.6832275390625 2 479.750005 957.485456 NaN NaN NaN NaN NaN NaN NaN 21.924 1 25.639 25.139 26.139 3.7144 0 0 0 0.40738 1 2152 2152 0.79363 0 1 51489 14516 32169 32186 59211 59211 0.005012819480725739 VSPIRVKTH 9 Unmodified _VSPIRVKTH_ 0 0 0 ENST00000601785.5_1_19:51738808-51742940:+|nuORF ENST00000601785.5_1_19:51738808-51742940:+|nuORF ENST00000601785.5_1_19:51738808-51742940:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 518.8145141601562 2 518.816733 1035.61891 0.32601 0.00016914 -1.2101 -0.0006278 -0.88405 -0.00045866 518.815965459761 107.99 0.67242 107.99 107.9 108.57 0 108 64 2 0 0 0 0.23293 5 26377 26355;26377;26411;26454;26484 18.146 0 1 84087000 51490 7662 32170 32187 59212;59213;59214;59215;59216 59213 0.10252844325418664 VSPLIPQKYKL 11 Unmodified _VSPLIPQKYKL_ 0 0 0 L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|99|2|sense;L1PA7_dup10349|chr12:46595295-46598256:-|1.2324648857549068|0.0225437215348513|5.77|149.0|72|3|sense;L1PA7_dup1234|chr2:89164611-89166474:-|2.929730630555914|0.0066487524493962|8.78|136.0|46|3|sense;L1PA5_dup2779|chr4:71012179-71017935:+|1.2668742847391803|0.0427819807789749|4.89|151.0|96|2|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|99|2|sense L1PA6_dup2422|chr6:70800520-70806617:-|1.1245222748245978|0.0765496249705235|3.88|151.0|99|2|sense MSMS UPN48_class_I_Rep_2 6 643.3980102539062 2 643.397556 1284.78056 NaN NaN NaN NaN NaN NaN NaN 97.865 1 101.64 101.14 102.14 3.779 0 0 0 0.38417 1 23247 23247 5.2969 0 1 51491 14593 32171 32188 59217 59217 0.14955968567846867 VSPNKLHL 8 Unmodified _VSPNKLHL_ 0 0 0 MLT1F_dup3005|chr12:104647665-104648150:-|2.260123853495672|0.0066372767827146|8.41|151.0|7|2|sense MLT1F_dup3005|chr12:104647665-104648150:-|2.260123853495672|0.0066372767827146|8.41|151.0|7|2|sense MLT1F_dup3005|chr12:104647665-104648150:-|2.260123853495672|0.0066372767827146|8.41|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 454.2716369628906 2 454.271627 906.528701 NaN NaN NaN NaN NaN NaN NaN 29.094 1 32.823 32.323 33.323 3.7286 0 0 0 0.40738 1 4041 4041 0.79363 0 1 51492 16380 32172 32189 59218 59218 0.0716979499700301 VSPRASPYNGR 11 Unmodified _VSPRASPYNGR_ 0 0 0 ERVL-E-int_dup2355|chr4:102271200-102271959:+|1.1469809858633802|0.0927981684252794|3.63|151.0|32|1|anti-sense ERVL-E-int_dup2355|chr4:102271200-102271959:+|1.1469809858633802|0.0927981684252794|3.63|151.0|32|1|anti-sense ERVL-E-int_dup2355|chr4:102271200-102271959:+|1.1469809858633802|0.0927981684252794|3.63|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 401.87774658203125 3 401.879149 1202.61562 NaN NaN NaN NaN NaN NaN NaN 29.294 1 29.294 28.794 29.794 0 0 0 0 0.38417 1 4618 4618 1.1098 0 1 51493 7744 32173 32190 59219 59219 0.022415494807319192 VSPRGLGR 8 Unmodified _VSPRGLGR_ 0 0 0 ENST00000415993.5_1_22:50688078-50689256:-|nuORF;ENST00000483222.5_1_22:50687938-50689256:-|nuORF;ENST00000429374.5_1_22:50686861-50689256:-|nuORF;ENST00000216271.9_1_22:50688078-50689256:-|nuORF;ENST00000496909.5_1_22:50687618-50689256:-|nuORF;ENST00000498366.5_1_22:50686861-50689256:-|nuORF ENST00000415993.5_1_22:50688078-50689256:-|nuORF ENST00000415993.5_1_22:50688078-50689256:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 421.2541809082031 2 421.253769 840.492984 0.078315 3.2991E-05 0.085755 3.6125E-05 0.16407 6.9115E-05 421.2537442434023 78.473 0.64907 78.473 78.171 78.82 0 103 70 2 0 0 0 0.82752 1 18428 18428 0 0 1 245430 51494 5863 32174 32191 59220 59220 0.06635757540004761 VSPSSILE 8 Unmodified _VSPSSILE_ 0 0 0 nc|ENSG00000162692|P19320-2|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1;ENSG00000162692|ENST00000294728|VCAM1 nc|ENSG00000162692|P19320-2|VCAM1 nc|ENSG00000162692|P19320-2|VCAM1 MSMS UPN48_class_I_Rep_3 7 416.2279052734375 2 416.226551 830.438549 NaN NaN NaN NaN NaN NaN NaN 27.59 1 31.345 30.845 31.845 3.7555 0 0 0 0.40625 1 3640 3640 2.3027 0 1 51495 3949 32175 32192 59221 59221 0.016547008779298267 VSPVYRLVI 9 Unmodified _VSPVYRLVI_ 0 0 0 REV__L1PA6_dup493|chr2:9926875-9929142:-|1.0220318981374297|0.1682851413858475|2.6|151.0|96|1|anti-sense REV__L1PA6_dup493|chr2:9926875-9929142:-|1.0220318981374297|0.1682851413858475|2.6|151.0|96|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 523.8027954101562 2 523.32386 1044.63317 0.42849 0.00022424 -0.48318 -0.00025286 -0.054694 -2.8623E-05 523.3236006112156 63.105 0.66234 66.579 66.327 66.989 3.4738 66 53 2 0 0 0 0.118 1 14210 14210 10.074 0.6908 1 177470 + 51496 24101 32176 32193 59222 59222 0.1126349675369056 VSQAASRTAY 10 Unmodified _VSQAASRTAY_ 0 0 0 REV__ENSG00000138002|ENST00000260570|IFT172 REV__ENSG00000138002|ENST00000260570|IFT172 MULTI-SECPEP UPN46_class_I_Rep_3 1 527.9228515625 2 527.269813 1052.52507 -0.017449 -9.2002E-06 -0.15889 -8.3776E-05 -0.17633 -9.2976E-05 527.2698908132758 25.916 0.43176 25.916 25.759 26.191 0 46 37 2 0 0 0 0.84575 1 3625 3625 11.495 1.4208 1 48237 + 51497 19257 32177 32194 59223 59223 0.0009108043248033937 VSQICKPWGCT 11 Unmodified _VSQICKPWGCT_ 0 0 0 REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|115|3|sense REV__HERV17-int_dup413|chr6:106228669-106233738:+|1.7740599931448708|0.0810405555731719|4.45|151.0|115|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 611.2909545898438 2 611.291376 1220.5682 0.39557 0.00024181 0.068922 4.2132E-05 0.46449 0.00028394 611.2907791558655 61.583 1.07 64.75 64.366 65.436 3.1667 231 78 4 0 0 0 0.30462 1 14631 14631 15.248 0 1 1378300 + 51498 23553 32178 32195 59224 59224 -0.03326189106110178 VSQNHVSY 8 Unmodified _VSQNHVSY_ 0 0 0 L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|31|1|sense L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|31|1|sense L1PA7_dup8181|chrX:79196566-79201431:+|1.65146112117786|0.01783793769257|6.53|150.0|31|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 467.224609375 2 467.224874 932.435195 -0.025173 -1.1761E-05 -0.32948 -0.00015394 -0.35465 -0.0001657 467.22460394123357 30.218 0.72354 30.218 29.882 30.606 0 119 59 3 0 0 0 0.82752 1 4879 4879 25.399 0 1 140970 51499 14901 32179 32196 59225 59225 -0.033725491761060766 VSQPKRAKRK 10 Unmodified _VSQPKRAKRK_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-MSMS UPN46_class_I_Rep_3 1 599.3804321289062 2 599.380563 1196.74657 0.5809 0.00034818 -0.66351 -0.0003977 -0.082619 -4.952E-05 599.3800927519205 99.533 0.026077 99.533 99.522 99.548 0 4 2 2 0 0 0 0.56493 1 24253 24253 0.35063 0 1 279140 51500 3071 32180 32197 59226 59226 0.15606984919440947 VSQVARYLL 9 Unmodified _VSQVARYLL_ 0 0 0 REV__nc|ENSG00000100359|Q96HU1-2|SGSM3 REV__nc|ENSG00000100359|Q96HU1-2|SGSM3 MSMS UPN48_class_I_Rep_1 5 524.8004760742188 2 524.811116 1047.60768 NaN NaN NaN NaN NaN NaN NaN 49.479 1 53.003 52.503 53.503 3.5246 0 0 0 0.39518 1 10003 10003 1.8442 0 1 + 51501 18111 32181 32198 59227 59227 0.08578022231267823 VSRCFMHLFLV 11 Unmodified _VSRCFMHLFLV_ 0 0 0 REV__L1MD1_dup5747|chr16:863934-864304:-|1.1169189202663568|0.1965341868366674|2.51|151.0|26|3|anti-sense REV__L1MD1_dup5747|chr16:863934-864304:-|1.1169189202663568|0.1965341868366674|2.51|151.0|26|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 451.54205322265625 3 451.238633 1350.69407 0.056856 2.5655E-05 -1.305 -0.00058886 -1.2481 -0.0005632 451.2379391934275 48.181 0.42173 51.917 51.785 52.207 3.7361 48 30 2 0 0 0 0.65674 1 9629 9629 2.6312 0.88896 1 103650 + 51502 27360 32182 32199 59228 59228 0.03274942469965936 VSRGTNQVIR 10 Unmodified _VSRGTNQVIR_ 0 0 0 MER21C_dup533|chr2:26111718-26112407:-|4.68550381312421|0.1288568061481713|5.18|151.0|10|2|sense MER21C_dup533|chr2:26111718-26112407:-|4.68550381312421|0.1288568061481713|5.18|151.0|10|2|sense MER21C_dup533|chr2:26111718-26112407:-|4.68550381312421|0.1288568061481713|5.18|151.0|10|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 565.8272705078125 2 565.325454 1128.63635 0.16401 9.2722E-05 0.081598 4.6129E-05 0.24561 0.00013885 565.3255100781643 28.608 0.77999 28.608 28.256 29.036 0 88 55 3 0 0 0 0.56033 1 4452 4452 3.5965 0 1 143970 51503 15908 32183 32200 59229 59229 0.0771813986041252 VSRGWAAQKQL 11 Unmodified _VSRGWAAQKQL_ 0 0 0 REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4 REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4 MSMS UPN46_class_I_Rep_3 1 622.3204345703125 2 622.348929 1242.6833 NaN NaN NaN NaN NaN NaN NaN 36.425 1 36.425 35.925 36.925 0 0 0 0 0.38417 1 6750 6750 0.96228 0.36078 1 + 51504 20715 32184 32201 59230 59230 0.07166999411560937 VSRHRRALRS 10 Unmodified _VSRHRRALRS_ 0 0 0 ENST00000473391.1_1_7:150067121-150067265:+|nuORF ENST00000473391.1_1_7:150067121-150067265:+|nuORF ENST00000473391.1_1_7:150067121-150067265:+|nuORF MSMS UPN46_class_I_Rep_3 1 619.3705444335938 2 619.371061 1236.72757 NaN NaN NaN NaN NaN NaN NaN 96.988 1 96.988 96.488 97.488 0 0 0 0 0.53105 1 23590 23590 0 0 1 51505 6941 32185 32202 59231 59231 0.11867448348380094 VSRIKKQK 8 Unmodified _VSRIKKQK_ 0 0 0 L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|40|3|sense L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|40|3|sense L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|40|3|sense MSMS UPN47_class_I_Rep_2 3 493.7904357910156 2 493.827101 985.639649 NaN NaN NaN NaN NaN NaN NaN 113.34 1 116.85 116.35 117.35 3.5171 0 0 0 0.40746 1 27564 27564 0.69038 0 1 51506 11958 32186 32203 59232 59232 0.14625434705078533 VSRKKSAKRG 10 Unmodified _VSRKKSAKRG_ 0 0 0 REV__L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|52|3|sense REV__L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|52|3|sense MSMS UPN48_class_I_Rep_2 6 558.8510131835938 2 558.851638 1115.68872 NaN NaN NaN NaN NaN NaN NaN 89.368 1 93.106 92.606 93.606 3.7379 0 0 0 0.53105 1 21289 21289 0 0 1 + 51507 26701 32187 32204 59233 59233 0.13550722994000353 VSRKPISR 8 Unmodified _VSRKPISR_ 0 0 0 L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|77|2|sense L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|77|2|sense L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|77|2|sense MSMS UPN48_class_I_Rep_2 6 471.795654296875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 119.81 1 123.48 122.98 123.98 3.6652 0 0 0 0.40753 1 28756 28756 0.6015 0 1 51508 14509 32188 32205 59234 59234 0.1039228863688777 VSRKPISR 8 Unmodified _VSRKPISR_ 0 0 0 L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|77|2|sense L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|77|2|sense L1PA5_dup7275|chrX:136977130-136983272:-|1.0820228552531814|0.0826881036330395|3.71|150.0|77|2|sense MSMS UPN48_class_I_Rep_3 7 471.7959289550781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 98.225 1 102.13 101.63 102.63 3.9022 0 0 0 0.40625 1 23278 23278 2.3027 0 1 51509 14509 32188 32205 59235 59235 0.1039228863688777 VSRKQLEFY 9 Unmodified _VSRKQLEFY_ 0 0 0 REV__ENST00000505065.1_1_5:130727572-130727803:+|nuORF REV__ENST00000505065.1_1_5:130727572-130727803:+|nuORF MSMS UPN47_class_I_Rep_1 2 585.318115234375 2 585.319306 1168.62406 NaN NaN NaN NaN NaN NaN NaN 69.19 1 72.558 72.058 73.058 3.3678 0 0 0 0.34056 1 16752 16752 8.5933 0 1 + 51510 22705 32189 32206 59236 59236 0.04649103397377985 VSRKQLEFY 9 Unmodified _VSRKQLEFY_ 0 0 0 REV__ENST00000505065.1_1_5:130727572-130727803:+|nuORF REV__ENST00000505065.1_1_5:130727572-130727803:+|nuORF MSMS UPN47_class_I_Rep_1 2 585.318603515625 2 585.319306 1168.62406 NaN NaN NaN NaN NaN NaN NaN 69.221 1 72.589 72.089 73.089 3.3678 0 0 0 0.34056 1 16759 16759 8.5933 0 1 + 51511 22705 32189 32206 59237 59237 0.04649103397377985 VSRLGRKP 8 Unmodified _VSRLGRKP_ 0 0 0 PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|54|2|anti-sense PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|54|2|anti-sense PABL_A-int_dup30|chr2:10201179-10202321:-|2.774401450838041|0.152997202538816|4.18|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 456.7920837402344 2 456.790518 911.566484 NaN NaN NaN NaN NaN NaN NaN 34.403 1 38.089 37.589 38.589 3.6859 0 0 0 0.40746 1 6186 6186 0.69038 0 1 51512 16880 32190 32207 59238 59238 0.10716305982464291 VSRLIVQR 8 Unmodified _VSRLIVQR_ 0 0 0 REV__MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|55|3|anti-sense REV__MER52A_dup151|chr2:153221508-153223084:-|1.88396929183882|0.0358954713474714|5.71|150.0|55|3|anti-sense MSMS UPN47_class_I_Rep_1 2 485.812255859375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 71.739 1 75.114 74.614 75.614 3.3751 0 0 0 0.40746 1 17510 17510 0.69038 0 1 + 51513 31412 32191 32208 59239 59239 0.12232861670997863 VSRLPLLLI 9 Unmodified _VSRLPLLLI_ 0 0 0 REV__L1ME3B_dup5604|chr12:76414776-76415234:-|1.2136913583727371|0.0216124279468117|5.81|151.0|30|2|anti-sense REV__L1ME3B_dup5604|chr12:76414776-76415234:-|1.2136913583727371|0.0216124279468117|5.81|151.0|30|2|anti-sense MSMS UPN46_class_I_Rep_3 1 512.35009765625 2 512.349877 1022.6852 NaN NaN NaN NaN NaN NaN NaN 89.995 1 89.995 89.495 90.495 0 0 0 0 0.4029 1 21681 21681 0 0 1 + 51514 28067 32192 32209 59240 59240 0.1747666016748326 VSRLVPSAL 9 Unmodified _VSRLVPSAL_ 0 0 0 REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B MSMS UPN48_class_I_Rep_3 7 471.2942199707031 2 471.292559 940.570566 NaN NaN NaN NaN NaN NaN NaN 46.084 1 49.721 49.221 50.221 3.6369 0 0 0 0.39518 1 8896 8896 1.8442 0 1 + 51515 19274 32193 32210 59241 59241 0.09790350685523208 VSRNPQILY 9 Unmodified _VSRNPQILY_ 0 0 0 nc|ENSG00000150347|Q14865-3|ARID5B;ENSG00000150347|ENST00000279873|ARID5B nc|ENSG00000150347|Q14865-3|ARID5B nc|ENSG00000150347|Q14865-3|ARID5B MSMS UPN48_class_I_Rep_3 7 545.3084106445312 2 545.306198 1088.59784 NaN NaN NaN NaN NaN NaN NaN 37.696 1 41.359 40.859 41.859 3.663 0 0 0 0.38784 1 6384 6384 3.5965 1.2938 1 51516 3560 32194 32211 59242 59242 0.05708834225924875 VSRNSKKLRG 10 Unmodified _VSRNSKKLRG_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|82|3|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|82|3|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|82|3|sense MSMS UPN46_class_I_Rep_3 1 572.8490600585938 2 572.849096 1143.68364 NaN NaN NaN NaN NaN NaN NaN 15.666 1 15.666 15.166 16.166 0 0 0 0 0.53105 1 938 938 0 0 1 51517 8594 32195 32212 59243 59243 0.11754419131398208 VSRNSKKLRG 10 Unmodified _VSRNSKKLRG_ 0 0 0 L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|82|3|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|82|3|sense L1M1_dup5081|chrX:47043843-47046688:+|1.489279737199256|0.0704200966026132|4.4|151.0|82|3|sense MSMS UPN46_class_I_Rep_3 1 572.8485107421875 2 572.849096 1143.68364 NaN NaN NaN NaN NaN NaN NaN 16.254 1 16.254 15.754 16.754 0 0 0 0 0.53105 1 1082 1082 0 0 1 51518 8594 32195 32212 59244 59244 0.11754419131398208 VSRNVFIY 8 Unmodified _VSRNVFIY_ 0 0 0 L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|273|3|anti-sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|273|3|anti-sense L1PA11_dup890|chr4:182732-187214:-|1.5276695102634186|0.280238833466872|2.45|146.0|273|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.2771301269531 2 499.276909 996.539266 -0.23742 -0.00011854 -0.056821 -2.8369E-05 -0.29424 -0.00014691 499.27686223680183 38.901 0.7891 42.566 42.278 43.068 3.6652 71 48 2 0 0 0 0.82752 1 7608 7608 10.824 0 1 86369 51519 13704 32196 32213 59245 59245 0.040857776514030775 VSRPINVLY 9 Unmodified _VSRPINVLY_ 0 0 0 L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|55|2|sense MSMS UPN48_class_I_Rep_1 5 530.8132934570312 2 530.811116 1059.60768 NaN NaN NaN NaN NaN NaN NaN 66.415 1 69.867 69.367 70.367 3.4516 0 0 0 0.38639 1 15186 15186 3.9444 1.3669 1 51520 13492 32197 32214 59246 59246 0.08026022231297247 VSRPPAAAAA 10 Unmodified _VSRPPAAAAA_ 0 0 0 ENST00000371544.7_1_1:53018618-53018768:-|nuORF ENST00000371544.7_1_1:53018618-53018768:-|nuORF ENST00000371544.7_1_1:53018618-53018768:-|nuORF MSMS UPN47_class_I_Rep_3 4 455.75823974609375 2 455.758884 909.503215 NaN NaN NaN NaN NaN NaN NaN 16.436 1 19.798 19.298 20.298 3.3619 0 0 0 0.53105 1 1024 1024 0 0 1 51521 6392 32198 32215 59247 59247 0.044843204745347975 VSRPRKTV 8 Unmodified _VSRPRKTV_ 0 0 0 ENST00000359878.7_1_2:201374485-201374596:-|nuORF ENST00000359878.7_1_2:201374485-201374596:-|nuORF ENST00000359878.7_1_2:201374485-201374596:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 471.7958679199219 2 471.795801 941.577048 -0.069425 -3.2755E-05 -1.032 -0.00048691 -1.1015 -0.00051966 471.79561056712083 48.799 0.45826 52.481 52.345 52.803 3.6819 44 30 3 0 0 0 0.82752 1 10521 10521 0.79363 0 1 590960 51522 6310 32199 32216 59248 59248 0.1039228863688777 VSRQCFLFM 9 Unmodified _VSRQCFLFM_ 0 0 0 REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|117|1|anti-sense REV__L1PB1_dup4894|chr6:38128339-38131338:-|3.4015258026293598|0.217748479772528|3.97|151.0|117|1|anti-sense MSMS UPN47_class_I_Rep_3 4 565.7769165039062 2 565.777905 1129.54126 NaN NaN NaN NaN NaN NaN NaN 40.191 1 43.429 42.929 43.929 3.2372 0 0 0 0.39428 1 8024 8024 2.0598 0 1 + 51523 30414 32200 32217 59249 59249 -0.018332529266217534 VSRQKQLQ 8 Unmodified _VSRQKQLQ_ 0 0 0 L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|3|1|sense L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|3|1|sense L1PA13_dup6387|chr11:14822301-14829323:+|7.09049997258416|0.1257802533841014|5.82|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 493.8002624511719 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 82.621 1 86.02 85.52 86.52 3.3984 0 0 0 0.40746 1 20594 20594 0.69038 0 1 51524 13776 32201 32218 59250 59250 0.07351680911654057 VSRSKRPL 8 Unmodified _VSRSKRPL_ 0 0 0 ENST00000548753.1_1_12:54734376-54737035:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1 ENST00000548753.1_1_12:54734376-54737035:+|nuORF ENST00000548753.1_1_12:54734376-54737035:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7955322265625 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 32.73 1 36.017 35.517 36.517 3.2867 0 0 0 0.40738 1 5749 5749 0.79363 0 1 51525 7391 32202 32219 59251 59251 0.10392288636899139 VSRSKRPL 8 Unmodified _VSRSKRPL_ 0 0 0 ENST00000548753.1_1_12:54734376-54737035:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1 ENST00000548753.1_1_12:54734376-54737035:+|nuORF ENST00000548753.1_1_12:54734376-54737035:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7959289550781 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 33.046 1 36.333 35.833 36.833 3.2867 0 0 0 0.40738 1 5846 5846 0.79363 0 1 51526 7391 32202 32219 59252 59252 0.10392288636899139 VSRSKRPL 8 Unmodified _VSRSKRPL_ 0 0 0 ENST00000548753.1_1_12:54734376-54737035:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1 ENST00000548753.1_1_12:54734376-54737035:+|nuORF ENST00000548753.1_1_12:54734376-54737035:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7959899902344 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 33.144 1 36.431 35.931 36.931 3.2867 0 0 0 0.40738 1 5872 5872 0.79363 0 1 51527 7391 32202 32219 59253 59253 0.10392288636899139 VSRTPIYAL 9 Unmodified _VSRTPIYAL_ 0 0 0 REV__L1PB1_dup11604|chr16:53279512-53280678:+|2.002242636893486|0.0608847559665329|5.04|151.0|66|2|anti-sense REV__L1PB1_dup11604|chr16:53279512-53280678:+|2.002242636893486|0.0608847559665329|5.04|151.0|66|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.2978210449219 2 510.297842 1018.58113 0.33912 0.00017305 -0.39126 -0.00019966 -0.052134 -2.6604E-05 510.7989752255434 67.773 0.39838 71.281 71.067 71.466 3.5077 46 34 2 0 0 0 0.43982 1 15512 15512 5.7319 0 1 100140 + 51528 30328 32203 32220 59254 59254 0.07258333339939327 VSRVPATAVQ 10 Unmodified _VSRVPATAVQ_ 0 0 0 AluJb_dup115908|chr19:19327967-19328178:+|1.0361172748465854|0.0567936829386475|4.19|151.0|2|1|sense AluJb_dup115908|chr19:19327967-19328178:+|1.0361172748465854|0.0567936829386475|4.19|151.0|2|1|sense AluJb_dup115908|chr19:19327967-19328178:+|1.0361172748465854|0.0567936829386475|4.19|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 514.3167724609375 2 514.298373 1026.58219 NaN NaN NaN NaN NaN NaN NaN 88.857 1 92.48 91.98 92.98 3.6229 0 0 0 0.53105 1 21321 21321 1.1933 0.23107 1 51529 27 32204 32221 59255 59255 0.06996547708831713 VSRVSLKILL 10 Unmodified _VSRVSLKILL_ 0 0 0 L1M5_dup13218|chr4:54034417-54036280:-|3.976657523710191|0.1435744283365991|4.79|151.0|71|1|anti-sense L1M5_dup13218|chr4:54034417-54036280:-|3.976657523710191|0.1435744283365991|4.79|151.0|71|1|anti-sense L1M5_dup13218|chr4:54034417-54036280:-|3.976657523710191|0.1435744283365991|4.79|151.0|71|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 564.3786010742188 2 564.379166 1126.74378 0.45201 0.0002551 -0.37841 -0.00021357 0.073599 4.1538E-05 564.378837165458 110.03 0.21465 110.03 109.88 110.1 0 23 16 2 0 0 0 0.56493 1 27090 27090 0.35063 0 1 891400 51530 9097 32205 32222 59256 59256 0.18547716741932163 VSRYQQWKKQ 10 Unmodified _VSRYQQWKKQ_ 0 0 0 REV__ENSG00000177138|ENST00000327220|FAM9B REV__ENSG00000177138|ENST00000327220|FAM9B MULTI-SECPEP UPN48_class_I_Rep_3 7 451.56121826171875 3 450.914083 1349.72042 0.068441 3.0861E-05 -0.14543 -6.5579E-05 -0.076994 -3.4718E-05 450.913786791103 32.912 0.13714 36.602 36.498 36.635 3.6896 21 15 2 0 0 0 0.84575 1 5056 5056 0.77653 0.078866 1 48279 + 51531 20611 32206 32223 59257 59257 0.059546709572941836 VSRYSATQ 8 Unmodified _VSRYSATQ_ 0 0 0 REV__HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|161|3|anti-sense REV__HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|161|3|anti-sense MSMS UPN48_class_I_Rep_2 6 456.2333984375 2 456.232699 910.450845 NaN NaN NaN NaN NaN NaN NaN 36.589 1 40.292 39.792 40.792 3.7021 0 0 0 0.40659 1 6163 6163 1.8442 0 1 + 51532 23919 32207 32224 59258 59258 -0.007962626590369837 VSRYVNIF 8 Unmodified _VSRYVNIF_ 0 0 0 L1MC4a_dup102|chr1:35971467-35971869:-|1.3990226544321358|0.0853987276043582|4.03|151.0|25|3|anti-sense L1MC4a_dup102|chr1:35971467-35971869:-|1.3990226544321358|0.0853987276043582|4.03|151.0|25|3|anti-sense L1MC4a_dup102|chr1:35971467-35971869:-|1.3990226544321358|0.0853987276043582|4.03|151.0|25|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.2755432128906 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 56.881 1 56.881 56.381 57.381 0 0 0 0 0.40364 1 12432 12432 5.7604 0 1 51533 11543 32208 32225 59259 59259 0.04085777651425815 VSSAAMNMQVQ 11 Unmodified _VSSAAMNMQVQ_ 0 0 0 L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|117|3|anti-sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|117|3|anti-sense L1MA4A_dup5956|chr20:13409694-13411636:-|2.075782126119139|0.1000962375517036|4.37|151.0|117|3|anti-sense MSMS UPN46_class_I_Rep_3 1 583.2306518554688 2 583.270641 1164.52673 NaN NaN NaN NaN NaN NaN NaN 68.209 1 68.209 67.709 68.709 0 0 0 0 0.38417 1 15562 15562 1.1933 0 1 51534 9851 32209 32226 59260 59260 -0.048953698654258915 VSSIADKLQPR 11 Unmodified _VSSIADKLQPR_ 0 0 0 HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|16|3|sense HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|16|3|sense HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|16|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 405.5693359375 3 405.234822 1212.68264 -0.085004 -3.4446E-05 0.16678 6.7585E-05 0.081776 3.3139E-05 405.2348471848673 35.059 0.66831 35.059 34.764 35.432 0 109 49 3 0 0 0 0.54468 1 6279 6279 6.6235 2.2173 1 330660 51535 7830 32210 32227 59261 59261 0.08480159971827561 VSSIRPLPY 9 Unmodified _VSSIRPLPY_ 0 0 0 LTR1A2_dup682|chr15:64618236-64619086:-|1.31314901958336|0.0276969374742228|5.57|150.0|33|1|anti-sense LTR1A2_dup682|chr15:64618236-64619086:-|1.31314901958336|0.0276969374742228|5.57|150.0|33|1|anti-sense LTR1A2_dup682|chr15:64618236-64619086:-|1.31314901958336|0.0276969374742228|5.57|150.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.298828125 2 516.297842 1030.58113 NaN NaN NaN NaN NaN NaN NaN 29.433 1 33.064 32.564 33.564 3.6316 0 0 0 0.38639 1 4180 4180 3.9444 0 1 51536 15589 32211 32228 59262 59262 0.06706333339957382 VSSIYRQK 8 Unmodified _VSSIYRQK_ 0 0 0 REV__L1MB7_dup17252|chr14:34781789-34782448:-|1.210086171965|0.2098859930866238|2.53|151.0|23|3|sense REV__L1MB7_dup17252|chr14:34781789-34782448:-|1.210086171965|0.2098859930866238|2.53|151.0|23|3|sense MSMS UPN47_class_I_Rep_2 3 490.78094482421875 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 64.293 1 67.549 67.049 68.049 3.2556 0 0 0 0.40625 1 15307 15307 2.3027 0 1 + 51537 26167 32212 32229 59263 59263 0.054488761630864246 VSSKGPALD 9 Unmodified _VSSKGPALD_ 0 0 0 REV__ENST00000504484.5_1_4:40895269-40936713:-|nuORF REV__ENST00000504484.5_1_4:40895269-40936713:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.2366943359375 2 437.23745 872.460347 NaN NaN NaN NaN NaN NaN NaN 78.475 1 82.01 81.51 82.51 3.5352 0 0 0 0.39518 1 18717 18717 1.8442 1.1539 1 + 51538 19999 32213 32230 59264 59264 0.01901505626449307 VSSLITRLTK 10 Unmodified _VSSLITRLTK_ 0 0 0 REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__ENSG00000198626|ENST00000366574|RYR2 REV__nc|ENSG00000198838|Q15413-2|RYR3 MSMS UPN48_class_I_Rep_3 7 559.3504028320312 2 559.350606 1116.68666 NaN NaN NaN NaN NaN NaN NaN 106.09 1 109.79 109.29 110.29 3.702 0 0 0 0.53105 1 25024 25024 0 0 1 + 51539 21152;21135 32214 32231 59265 59265 0.13298249465537992 VSSLRCGS 8 Unmodified _VSSLRCGS_ 0 0 0 REV__ENSG00000141431|ENST00000269197|ASXL3 REV__ENSG00000141431|ENST00000269197|ASXL3 MSMS UPN47_class_I_Rep_1 2 404.70318603515625 2 404.70272 807.390887 NaN NaN NaN NaN NaN NaN NaN 99.82 1 103.61 103.11 104.11 3.7942 0 0 0 0.40604 1 24680 24680 2.5775 0 1 + 51540 19374 32215 32232 59266 59266 -0.020512765939315614 VSSLRCGS 8 Unmodified _VSSLRCGS_ 0 0 0 REV__ENSG00000141431|ENST00000269197|ASXL3 REV__ENSG00000141431|ENST00000269197|ASXL3 MSMS UPN47_class_I_Rep_1 2 404.7030029296875 2 404.70272 807.390887 NaN NaN NaN NaN NaN NaN NaN 100.1 1 103.9 103.4 104.4 3.7942 0 0 0 0.40604 1 24754 24754 2.5775 0 1 + 51541 19374 32215 32232 59267 59267 -0.020512765939315614 VSSLRCGS 8 Unmodified _VSSLRCGS_ 0 0 0 REV__ENSG00000141431|ENST00000269197|ASXL3 REV__ENSG00000141431|ENST00000269197|ASXL3 MSMS UPN47_class_I_Rep_2 3 404.7033996582031 2 404.70272 807.390887 NaN NaN NaN NaN NaN NaN NaN 99.813 1 103.31 102.81 103.81 3.4974 0 0 0 0.40604 1 24420 24420 2.5775 0 1 + 51542 19374 32215 32232 59268 59268 -0.020512765939315614 VSSLRCGS 8 Unmodified _VSSLRCGS_ 0 0 0 REV__ENSG00000141431|ENST00000269197|ASXL3 REV__ENSG00000141431|ENST00000269197|ASXL3 MSMS UPN47_class_I_Rep_3 4 404.7033996582031 2 404.70272 807.390887 NaN NaN NaN NaN NaN NaN NaN 99.948 1 103.4 102.9 103.9 3.4483 0 0 0 0.40604 1 24701 24701 2.5775 0 1 + 51543 19374 32215 32232 59269 59269 -0.020512765939315614 VSSPFIVSL 9 Unmodified _VSSPFIVSL_ 0 0 0 ENSG00000114124|ENST00000682958|GRK7 ENSG00000114124|ENST00000682958|GRK7 ENSG00000114124|ENST00000682958|GRK7 MULTI-MSMS UPN48_class_I_Rep_2 6 474.77337646484375 2 474.773668 947.532783 0.2179 0.00010345 -0.65687 -0.00031186 -0.43897 -0.00020841 474.77314087980176 85.825 0.25137 89.531 89.419 89.671 3.7058 29 24 2 0 0 0 0.16559 2 20431 20431;20444 24.021 4.7636 1 71465 51544 2068 32216 32233 59270;59271 59270 0.056918397000458754 VSSQLYLQG 9 Unmodified _VSSQLYLQG_ 0 0 0 REV__ENSG00000172071|ENST00000303236|EIF2AK3 REV__ENSG00000172071|ENST00000303236|EIF2AK3 MSMS UPN46_class_I_Rep_3 1 497.2767028808594 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 76.122 1 76.122 75.622 76.622 0 0 0 0 0.36505 1 17739 17739 7.2892 0 1 + 51545 20435 32217 32234 59272 59272 0.016094636892717062 VSSRGSCLT 9 Unmodified _VSSRGSCLT_ 0 0 0 REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 455.2258605957031 2 455.226559 908.438566 -1.0466 -0.00047642 -0.31725 -0.00014442 -1.3638 -0.00062084 455.2263904378801 14.68 0.25033 18.05 17.929 18.179 3.3697 41 29 2 0 0 0 0.50582 1 588 588 0 0 1 31320 + 51546 27816 32218 32235 59273 59273 -0.0193162239376079 VSSRGSCLT 9 Unmodified _VSSRGSCLT_ 0 0 0 REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 455.226559 908.438566 -0.43159 -0.00019647 -0.7781 -0.00035421 -1.2097 -0.00055068 455.226132158536 14.603 0.2049 18.078 18.018 18.223 3.475 0.0047215 -0.00014784 NaN 0 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 34878 + 51547 27816 32218 32235 -0.0193162239376079 VSSRGSCLT 9 Unmodified _VSSRGSCLT_ 0 0 0 REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 455.226559 908.438566 -0.49937 -0.00022733 -0.85244 -0.00038805 -1.3518 -0.00061538 455.2261620770991 14.704 0.16469 18.091 18.023 18.188 3.3871 0.01836 -0.00021552 NaN 0 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 31005 + 51548 27816 32218 32235 -0.0193162239376079 VSSRGSCLT 9 Unmodified _VSSRGSCLT_ 0 0 0 REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense REV__L1ME2_dup10743|chr15:99588743-99592187:-|1.3541689485077255|0.0363031651739299|5.22|150.0|206|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 455.226559 908.438566 -1.0466 -0.00047642 -0.31725 -0.00014442 -1.3638 -0.00062084 455.2263904378801 14.68 0.25033 18.05 17.929 18.179 3.3697 -0.023081 0.00027175 NaN 0 41 29 2 NaN NaN NaN NaN 0 NaN NaN 0 31320 + 51549 27816 32218 32235 -0.0193162239376079 VSSRSCAAIT 10 Unmodified _VSSRSCAAIT_ 0 0 0 L1MB7_dup2872|chr2:128172867-128173352:-|1.1434393067605426|0.1802390811445778|2.67|151.0|26|2|anti-sense L1MB7_dup2872|chr2:128172867-128173352:-|1.1434393067605426|0.1802390811445778|2.67|151.0|26|2|anti-sense L1MB7_dup2872|chr2:128172867-128173352:-|1.1434393067605426|0.1802390811445778|2.67|151.0|26|2|anti-sense MSMS UPN46_class_I_Rep_3 1 497.8065185546875 2 497.752941 993.491329 NaN NaN NaN NaN NaN NaN NaN 16.697 1 16.697 16.197 17.197 0 0 0 0 0.53105 1 1193 1193 0 0 1 51550 10820 32219 32236 59274 59274 -0.005676643309584506 VSSTPISGFEN 11 Unmodified _VSSTPISGFEN_ 0 0 0 REV__L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|170|2|anti-sense REV__L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|170|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.2740478515625 2 569.274761 1136.53497 0.43187 0.00024585 0.23343 0.00013288 0.6653 0.00037874 569.2747434046146 64.287 0.54355 67.461 67.227 67.77 3.1741 43 36 2 0 0 0 0.48412 1 15363 15363 8.1555 0 1 138520 + 51551 24913 32220 32237 59275 59275 -0.027837763527941206 VSSVPDVF 8 Unmodified _VSSVPDVF_ 0 0 0 ENSG00000124198.9,ARFGEF2,chr20,+,I27.1,49010405,49011923|55|7.33|6|intron;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198.9,ARFGEF2,chr20,+,I27.1,49010405,49011923|55|7.33|6|intron ENSG00000124198.9,ARFGEF2,chr20,+,I27.1,49010405,49011923|55|7.33|6|intron MULTI-SECPEP UPN48_class_I_Rep_2 6 425.7524108886719 2 425.221268 848.427984 0.077454 3.2935E-05 0.6564 0.00027912 0.73386 0.00031205 425.2214606422393 79.08 0.6111 82.713 82.456 83.067 3.6331 123 70 2 0 0 0 0.72333 1 18771 18771 9.3474 3.587 1 339950 51552 2451 32221 32238 59276 59276 -0.002292817765237487 VSSVPDVF 8 Unmodified _VSSVPDVF_ 0 0 0 ENSG00000124198.9,ARFGEF2,chr20,+,I27.1,49010405,49011923|55|7.33|6|intron;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198.9,ARFGEF2,chr20,+,I27.1,49010405,49011923|55|7.33|6|intron ENSG00000124198.9,ARFGEF2,chr20,+,I27.1,49010405,49011923|55|7.33|6|intron MULTI-SECPEP UPN48_class_I_Rep_3 7 425.7524108886719 2 425.221268 848.427984 0.15667 6.6621E-05 0.65583 0.00027887 0.81251 0.00034549 425.22145719052037 79.082 0.59024 82.725 82.458 83.048 3.6423 132 72 2 0 0 0 0.72333 1 18762 18762 9.3474 3.587 1 368930 51553 2451 32221 32238 59277 59277 -0.002292817765237487 VSTDVELSHYQ 11 Unmodified _VSTDVELSHYQ_ 0 0 0 MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|28|2|anti-sense MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|28|2|anti-sense MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|28|2|anti-sense MSMS UPN47_class_I_Rep_1 2 639.3042602539062 2 639.304049 1276.59355 NaN NaN NaN NaN NaN NaN NaN 59.411 1 62.809 62.309 63.309 3.3982 0 0 0 0.37931 1 13794 13794 7.1017 0 1 51554 16210 32222 32239 59278 59278 -0.03368719778313789 VSTDVELSHYQ 11 Unmodified _VSTDVELSHYQ_ 0 0 0 MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|28|2|anti-sense MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|28|2|anti-sense MER76_dup239|chr5:69786306-69786904:-|1.6082946916755108|0.0127110699252625|6.98|144.0|28|2|anti-sense MSMS UPN47_class_I_Rep_2 3 639.305419921875 2 639.304049 1276.59355 NaN NaN NaN NaN NaN NaN NaN 59.725 1 62.998 62.498 63.498 3.2731 0 0 0 0.38417 1 13923 13923 4.5289 0.33936 1 51555 16210 32222 32239 59279 59279 -0.03368719778313789 VSTISIDH 8 Unmodified _VSTISIDH_ 0 0 0 L1ME2_dup8619|chr11:43468900-43469825:+|4.985731433221369|0.3192652694929977|3.96|151.0|63|3|anti-sense L1ME2_dup8619|chr11:43468900-43469825:+|4.985731433221369|0.3192652694929977|3.96|151.0|63|3|anti-sense L1ME2_dup8619|chr11:43468900-43469825:+|4.985731433221369|0.3192652694929977|3.96|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_1 5 436.22821044921875 2 436.229625 870.444697 NaN NaN NaN NaN NaN NaN NaN 96.509 1 100.12 99.621 100.62 3.6124 0 0 0 0.40604 1 23253 23253 2.5775 0 1 51556 12533 32223 32240 59280 59280 0.0042921910941231545 VSTKKSKRKG 10 Unmodified _VSTKKSKRKG_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MSMS UPN48_class_I_Rep_2 6 559.8532104492188 2 559.853847 1117.69314 NaN NaN NaN NaN NaN NaN NaN 105.95 1 109.63 109.13 110.13 3.6834 0 0 0 0.53105 1 25061 25061 0 0 1 51557 2142 32224 32241 59281 59281 0.13900187416925291 VSTLPRPVKLY 11 Unmodified _VSTLPRPVKLY_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MULTI-MSMS UPN47_class_I_Rep_1 2 636.8880004882812 2 636.887355 1271.76016 0.57015 0.00036312 -0.69584 -0.00044317 -0.12569 -8.005E-05 637.3880453475009 109.25 0.177 112.85 112.78 112.96 3.6046 32 22 2 0 0 0 0.65271 1 26935 26935 2.9952 0.26005 1 692430 51558 5381 32225 32242 59282 59282 0.1351479790803296 VSTLPRPVKLY 11 Unmodified _VSTLPRPVKLY_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 636.887355 1271.76016 0.57015 0.00036312 -0.69584 -0.00044317 -0.12569 -8.005E-05 637.3880453475009 109.25 0.177 112.85 112.78 112.96 3.6046 -0.017222 -0.00039008 NaN 2.9952 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 692430 51559 5381 32225 32242 0.1351479790803296 VSTLPRPVKLY 11 Unmodified _VSTLPRPVKLY_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 636.887355 1271.76016 0.63452 0.00040412 -0.39434 -0.00025115 0.24017 0.00015296 636.8872898209486 109.32 0.26883 112.86 112.75 113.02 3.5307 -0.01167 -6.0394E-06 NaN 2.9952 42 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1385800 51560 5381 32225 32242 0.1351479790803296 VSTLPRPVKLY 11 Unmodified _VSTLPRPVKLY_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 636.887355 1271.76016 0.62555 0.0003984 0.71434 0.00045495 1.3399 0.00085335 637.3892766468548 109.22 0.041382 112.9 112.87 112.91 3.6751 0.028892 0.0014062 NaN 2.9952 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 821320 51561 5381 32225 32242 0.1351479790803296 VSTLSVHKS 9 Unmodified _VSTLSVHKS_ 0 0 0 REV__MER21A_dup192|chr2:48496765-48497350:+|1.7739030615424336|0.3874903431073234|2.19|151.0|18|3|sense REV__MER21A_dup192|chr2:48496765-48497350:+|1.7739030615424336|0.3874903431073234|2.19|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 479.2723083496094 2 479.271824 956.529095 NaN NaN NaN NaN NaN NaN NaN 36.092 1 39.347 38.847 39.847 3.2547 0 0 0 0.39598 1 6764 6764 1.6526 0 1 + 51562 31183 32226 32243 59283 59283 0.049091699261907706 VSTNIYNKF 9 Unmodified _VSTNIYNKF_ 0 0 0 REV__ENST00000462546.5_1_7:23719819-23732088:+|nuORF REV__ENST00000462546.5_1_7:23719819-23732088:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 543.284912109375 2 543.284931 1084.55531 0.42352 0.00023009 -0.16312 -8.862E-05 0.2604 0.00014147 543.284783007111 42.419 1.134 45.927 45.59 46.724 3.5079 255 96 4 0 0 0 0.47197 1 7747 7747 3.5965 0 1 1089900 + 51563 22440 32227 32244 59284 59284 0.0164143909764789 VSTTTVKKLNS 11 Unmodified _VSTTTVKKLNS_ 0 0 0 L1MD2_dup9473|chr17:39559154-39559561:-|1.4813586737659596|0.3275873842225064|2.18|151.0|21|1|anti-sense L1MD2_dup9473|chr17:39559154-39559561:-|1.4813586737659596|0.3275873842225064|2.18|151.0|21|1|anti-sense L1MD2_dup9473|chr17:39559154-39559561:-|1.4813586737659596|0.3275873842225064|2.18|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.343994140625 2 589.342978 1176.6714 NaN NaN NaN NaN NaN NaN NaN 84.237 1 87.834 87.334 88.334 3.5973 0 0 0 0.38417 1 20164 20164 0 0 1 51564 12048 32228 32245 59285 59285 0.09013337877718186 VSTVLLILY 9 Unmodified _VSTVLLILY_ 0 0 0 REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.8201904296875 2 510.820618 1019.62668 NaN NaN NaN NaN NaN NaN NaN 85.688 1 89.294 88.794 89.794 3.6059 0 0 0 0.074 1 20504 20504 30.225 0 1 + 51565 23423 32229 32246 59286 59286 0.11765558802335363 VSTVLLILY 9 Unmodified _VSTVLLILY_ 0 0 0 REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_2 6 510.8208923339844 2 510.820618 1019.62668 NaN NaN NaN NaN NaN NaN NaN 85.587 1 89.293 88.793 89.793 3.7058 0 0 0 0.1074 1 20356 20356 23.148 0 1 + 51566 23423 32229 32246 59287 59287 0.11765558802335363 VSTVLLILY 9 Unmodified _VSTVLLILY_ 0 0 0 REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense REV__HAL1_dup4105|chr3:11503779-11505175:+|5.033112634259251|0.0600292875287175|6.39|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_2 6 510.8199768066406 2 510.820618 1019.62668 NaN NaN NaN NaN NaN NaN NaN 85.784 1 89.489 88.989 89.989 3.7058 0 0 0 0.1074 1 20413 20413 23.148 0 1 + 51567 23423 32229 32246 59288 59288 0.11765558802335363 VSVHISLARGR 11 Unmodified _VSVHISLARGR_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MULTI-MSMS UPN46_class_I_Rep_3 1 597.8565673828125 2 597.856921 1193.69929 0.57596 0.00034434 -1.1499 -0.00068746 -0.57392 -0.00034312 597.8560679685173 89.679 0.2317 89.679 89.583 89.815 0 48 20 3 0 0 0 0.65559 1 21571 21571 2.7352 2.7352 1 640970 + 51568 17825 32230 32247 59289 59289 0.11018705648439209 VSVHVDNSRD 10 Unmodified _VSVHVDNSRD_ 0 0 0 nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 nc|ENSG00000005810|O75592-2|MYCBP2 MSMS UPN47_class_I_Rep_1 2 564.2763671875 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 85.813 1 89.429 88.929 89.929 3.6153 0 0 0 0.53105 1 21430 21430 1.3295 0.5359 1 51569 703 32231 32248 59290 59290 -0.021507225441837363 VSVIPYLTV 9 Unmodified _VSVIPYLTV_ 0 0 0 MER57A-int_dup1517|chr16:74561272-74562458:+|1.1528932432385692|0.016888494801498|6.09|151.0|72|3|anti-sense MER57A-int_dup1517|chr16:74561272-74562458:+|1.1528932432385692|0.016888494801498|6.09|151.0|72|3|anti-sense MER57A-int_dup1517|chr16:74561272-74562458:+|1.1528932432385692|0.016888494801498|6.09|151.0|72|3|anti-sense MSMS UPN47_class_I_Rep_1 2 495.79583740234375 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 73.927 1 77.313 76.813 77.813 3.3861 0 0 0 0.38639 1 18173 18173 3.9444 0 1 51570 16116 32232 32249 59291 59291 0.08452699251165541 VSVLFQYHV 9 Unmodified _VSVLFQYHV_ 0 0 0 L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|112|2|anti-sense L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|112|2|anti-sense L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|112|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 546.2740478515625 2 546.297842 1090.58113 0.20375 0.00011131 -2.3268 -0.0012711 -2.1231 -0.0011598 546.2963258512908 33.574 0.040024 33.574 33.555 33.595 0 5 3 2 0 0 0 0.12477 1 5890 5890 1.6526 0 1 27806 51571 8958 32233 32250 59292 59292 0.039463333399453404 VSVLLAELF 9 Unmodified _VSVLLAELF_ 0 0 0 REV__L1PA3_dup258|chr1:94506994-94512223:-|1.3044041384065448|0.4624865510661713|1.5|150.0|256|2|anti-sense REV__L1PA3_dup258|chr1:94506994-94512223:-|1.3044041384065448|0.4624865510661713|1.5|150.0|256|2|anti-sense MSMS UPN47_class_I_Rep_2 3 495.7962646484375 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 72.63 1 75.927 75.427 76.427 3.2971 0 0 0 0.39428 1 17814 17814 2.0598 0 1 + 51572 29527 32234 32251 59293 59293 0.08452699251188278 VSVLLAELF 9 Unmodified _VSVLLAELF_ 0 0 0 REV__L1PA3_dup258|chr1:94506994-94512223:-|1.3044041384065448|0.4624865510661713|1.5|150.0|256|2|anti-sense REV__L1PA3_dup258|chr1:94506994-94512223:-|1.3044041384065448|0.4624865510661713|1.5|150.0|256|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.7958984375 2 495.797143 989.579734 0.22608 0.00011209 -2.4402 -0.0012098 -2.2141 -0.0010977 495.7959750702081 72.517 0.34967 75.744 75.663 76.013 3.2271 42 26 2 0 0 0 0.48643 1 17919 17919 2.0598 0 1 1523100 + 51573 29527 32234 32251 59294 59294 0.08452699251188278 VSVNFSLFF 9 Unmodified _VSVNFSLFF_ 0 0 0 L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|250|2|anti-sense L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|250|2|anti-sense L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|250|2|anti-sense MSMS UPN48_class_I_Rep_3 7 530.6763916015625 2 530.279118 1058.54368 NaN NaN NaN NaN NaN NaN NaN 40.801 1 44.452 43.952 44.952 3.6509 0 0 0 0.39518 1 7299 7299 1.8442 0 1 51574 15000 32235 32252 59295 59295 0.01675242074338712 VSVPPKNLK 9 Unmodified _VSVPPKNLK_ 0 0 0 REV__ENST00000583418.1_1_18:71928104-71959110:-|nuORF REV__ENST00000583418.1_1_18:71928104-71959110:-|nuORF MSMS UPN47_class_I_Rep_1 2 491.3094482421875 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 109.69 1 113.3 112.8 113.8 3.6046 0 0 0 0.36505 1 27067 27067 7.2892 0.56607 1 + 51575 23132 32236 32253 59296 59296 0.11078923719605882 VSVPVIPAT 9 Unmodified _VSVPVIPAT_ 0 0 0 AluSx_dup20164|chr3:49392895-49393184:+|1.3150393950473338|0.0081471964403038|7.33|151.0|8|3|sense AluSx_dup20164|chr3:49392895-49393184:+|1.3150393950473338|0.0081471964403038|7.33|151.0|8|3|sense AluSx_dup20164|chr3:49392895-49393184:+|1.3150393950473338|0.0081471964403038|7.33|151.0|8|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.7682800292969 2 441.768386 881.522219 -0.077464 -3.4221E-05 -0.089571 -3.957E-05 -0.16703 -7.3791E-05 441.7682019061066 96.721 0.98116 100.2 99.85 100.83 3.4791 304 141 3 0 0 0 0.46434 1 23856 23856 4.3292 0 1 3612000 51576 275 32237 32254 59297 59297 0.07671857045602337 VSVSELLLY 9 Unmodified _VSVSELLLY_ 0 0 0 nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1 nc|ENSG00000152332|Q8TAS1-2|UHMK1 nc|ENSG00000152332|Q8TAS1-2|UHMK1 MULTI-MSMS UPN48_class_I_Rep_2 6 511.7918701171875 2 511.792058 1021.56956 0.32035 0.00016395 -0.027552 -1.4101E-05 0.2928 0.00014985 511.79179561826373 83.405 0.22513 87.086 87.035 87.26 3.6814 32 25 2 0 0 0 0.11897 1 19834 19834 30.225 0 1 68573 51577 3618 32238 32255 59298 59298 0.05964091525947879 VSVSELLLY 9 Unmodified _VSVSELLLY_ 0 0 0 nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1 nc|ENSG00000152332|Q8TAS1-2|UHMK1 nc|ENSG00000152332|Q8TAS1-2|UHMK1 MSMS UPN48_class_I_Rep_2 6 511.79168701171875 2 511.792058 1021.56956 NaN NaN NaN NaN NaN NaN NaN 83.337 1 87.018 86.518 87.518 3.6814 0 0 0 0.099968 1 19803 19803 24.674 0 1 51578 3618 32238 32255 59299 59299 0.05964091525947879 VSVVYQLNV 9 Unmodified _VSVVYQLNV_ 0 0 0 REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|108|1|anti-sense REV__Charlie1_dup558|chr4:102675164-102678056:+|4.59822402817949|0.1353405014369433|5.09|151.0|108|1|anti-sense MSMS UPN46_class_I_Rep_3 1 510.7898864746094 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 85.274 1 85.274 84.774 85.774 0 0 0 0 0.37891 1 20335 20335 5.7319 0.43497 1 + 51579 17271 32239 32256 59300 59300 0.056146271030456774 VSVWAWFC 8 Unmodified _VSVWAWFC_ 0 0 0 ENST00000431002.6_1_11:62438460-62439219:-|nuORF ENST00000431002.6_1_11:62438460-62439219:-|nuORF ENST00000431002.6_1_11:62438460-62439219:-|nuORF MSMS UPN47_class_I_Rep_3 4 499.23406982421875 2 499.233656 996.452759 NaN NaN NaN NaN NaN NaN NaN 117.48 1 120.92 120.42 121.42 3.4425 0 0 0 0.40738 1 28947 28947 0.79363 0 1 51580 6728 32240 32257 59301 59301 -0.04560925174791919 VSWEMWCS 8 Unmodified _VSWEMWCS_ 0 0 0 REV__L1MA9_dup16157|chr22:46837139-46837781:+|1.0389676835566717|0.0077517902388584|7.07|151.0|27|1|anti-sense REV__L1MA9_dup16157|chr22:46837139-46837781:+|1.0389676835566717|0.0077517902388584|7.07|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_3 7 514.2049560546875 2 514.204238 1026.39392 NaN NaN NaN NaN NaN NaN NaN 82.535 1 86.241 85.741 86.741 3.7066 0 0 0 0.40604 1 19565 19565 2.5775 0 1 + 51581 25625 32241 32258 59302 59302 -0.11821769531434256 VSWIKDKL 8 Unmodified _VSWIKDKL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN47_class_I_Rep_2 3 494.7948303222656 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 1 7133 7133 3.9444 0.94915 1 349140 51582 2368 32242 32259 59303 59303 0.08103234828263339 VSWIKDKL 8 Unmodified _VSWIKDKL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS UPN47_class_I_Rep_3 4 494.7951354980469 2 494.794935 987.575317 -0.2959 -0.00014641 -0.057062 -2.8234E-05 -0.35296 -0.00017464 494.7949983355703 37.738 0.28008 40.98 40.931 41.211 3.2414 29 22 2 0 0 0 0.82752 1 7267 7267 3.9444 0 1 52957 51583 2368 32242 32259 59304 59304 0.08103234828263339 VSWIKDKL 8 Unmodified _VSWIKDKL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;PDS5A|p.G815Efs*2|1|0.05|ENSG00000121892|chr4:39869455-39869456|-/T|frameshift_variant ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 494.794935 987.575317 -0.26343 -0.00013035 -0.39301 -0.00019446 -0.65644 -0.0003248 494.7949465551656 36.954 0.24373 40.623 40.512 40.755 3.6692 -0.17837 -0.00018566 NaN 3.9444 24 20 2 NaN NaN NaN NaN 0 NaN NaN 0 67471 51584 2368 32242 32259 0.08103234828263339 VSYIYIVN 8 Unmodified _VSYIYIVN_ 0 0 0 REV__ENST00000460939.5_1_11:62370516-62371529:-|nuORF REV__ENST00000460939.5_1_11:62370516-62371529:-|nuORF MSMS UPN48_class_I_Rep_3 7 485.7651672363281 2 485.765843 969.517133 NaN NaN NaN NaN NaN NaN NaN 76.691 1 80.274 79.774 80.774 3.5831 0 0 0 0.4044 1 18072 18072 4.756 0 1 + 51585 19616 32243 32260 59305 59305 0.031155531829995198 VSYLTWIYI 9 Unmodified _VSYLTWIYI_ 0 0 0 REV__L1MB2_dup2557|chr5:131403412-131404964:+|2.010034898225902|0.0377672001317119|5.73|150.0|70|1|anti-sense REV__L1MB2_dup2557|chr5:131403412-131404964:+|2.010034898225902|0.0377672001317119|5.73|150.0|70|1|anti-sense MSMS UPN46_class_I_Rep_3 1 579.313720703125 2 579.3157 1156.61685 NaN NaN NaN NaN NaN NaN NaN 47.167 1 47.167 46.667 47.667 0 0 0 0 0.39518 1 9732 9732 1.8442 0.19162 1 + 51586 25715 32244 32261 59306 59306 0.04480370796954958 VSYQKLLKY 9 Unmodified _VSYQKLLKY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_1 5 571.3331909179688 2 571.334424 1140.6543 0.40575 0.00023182 -0.25281 -0.00014444 0.15295 8.7384E-05 571.3339347120225 44.461 0.59529 47.974 47.643 48.238 3.5132 57 41 2 0 0 0 0.279 4 8477 8406;8457;8477;8510 15.248 9.5166 1 124140 51587 4671 32245 32262 59307;59308;59309;59310 59309 0.08959462062580315 VSYQKLLKY 9 Unmodified _VSYQKLLKY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_2 6 571.3340454101562 2 571.334424 1140.6543 0.40646 0.00023223 -0.22669 -0.00012952 0.17977 0.00010271 571.3340907676652 44.189 0.70444 47.95 47.549 48.253 3.7617 80 51 2 0 0 0 0.17979 4 8359 8319;8359;8398;8425 22.658 11.859 1 130350 51588 4671 32245 32262 59311;59312;59313;59314 59312 0.08959462062580315 VSYQKLLKY 9 Unmodified _VSYQKLLKY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_3 7 571.3344116210938 2 571.334424 1140.6543 0.38419 0.0002195 -0.15811 -9.0333E-05 0.22608 0.00012917 571.3342499265297 44.367 0.79704 48.004 47.586 48.383 3.6372 89 54 2 0 0 0 0.33908 5 8330 8330;8372;8378;8421;8425 11.495 5.7629 1 158100 51589 4671 32245 32262 59315;59316;59317;59318;59319 59315 0.08959462062580315 VSYTLSTV 8 Unmodified _VSYTLSTV_ 0 0 0 REV__MSTB2_dup1431|chr17:60189936-60190360:+|1.0262337890269886|0.1024340739346319|3.32|151.0|5|1|sense REV__MSTB2_dup1431|chr17:60189936-60190360:+|1.0262337890269886|0.1024340739346319|3.32|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 435.2344665527344 2 435.234376 868.454199 NaN NaN NaN NaN NaN NaN NaN 28.754 1 32.496 31.996 32.996 3.7424 0 0 0 0.40625 1 3952 3952 2.3027 0 1 + 51590 31912 32246 32263 59320 59320 0.014709873949641405 VSYVYFFVH 9 Unmodified _VSYVYFFVH_ 0 0 0 SVA_C_dup228|chrX:44910504-44912072:-|2.029039867030806|0.0354475131363019|5.84|151.0|54|2|anti-sense SVA_C_dup228|chrX:44910504-44912072:-|2.029039867030806|0.0354475131363019|5.84|151.0|54|2|anti-sense SVA_C_dup228|chrX:44910504-44912072:-|2.029039867030806|0.0354475131363019|5.84|151.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 580.7923583984375 2 580.792392 1159.57023 NaN NaN NaN NaN NaN NaN NaN 21.624 1 25.299 24.799 25.799 3.6749 0 0 0 0.39428 1 2376 2376 2.0598 0 1 51591 32847 32247 32264 59321 59321 -0.003170690343267779 VTAAFCLAMP 10 Unmodified _VTAAFCLAMP_ 0 0 0 L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|226|1|anti-sense L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|226|1|anti-sense L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|226|1|anti-sense MSMS UPN46_class_I_Rep_3 1 512.2407836914062 2 512.253731 1022.49291 NaN NaN NaN NaN NaN NaN NaN 30.523 1 30.523 30.023 31.023 0 0 0 0 0.53105 1 4983 4983 7.9102 0 1 51592 14311 32248 32265 59322 59322 -0.017437465665466334 VTADLLLGH 9 Unmodified _VTADLLLGH_ 0 0 0 REV__L1MC5a_dup5862|chr5:179981445-179981846:-|4.409165506321278|0.2760874209012852|4.0|151.0|25|2|anti-sense REV__L1MC5a_dup5862|chr5:179981445-179981846:-|4.409165506321278|0.2760874209012852|4.0|151.0|25|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 469.7688903808594 2 469.768917 937.523281 0.1766 8.2961E-05 0.36908 0.00017338 0.54568 0.00025634 469.76897714661936 64.969 0.11062 64.969 64.952 65.063 0 16 10 2 0 0 0 0.26948 1 14684 14684 15.847 0 1 71155 + 51593 27166 32249 32266 59323 59323 0.05202071414544207 VTADLLLGH 9 Unmodified _VTADLLLGH_ 0 0 0 REV__L1MC5a_dup5862|chr5:179981445-179981846:-|4.409165506321278|0.2760874209012852|4.0|151.0|25|2|anti-sense REV__L1MC5a_dup5862|chr5:179981445-179981846:-|4.409165506321278|0.2760874209012852|4.0|151.0|25|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 469.768917 937.523281 0.1766 8.2961E-05 0.36908 0.00017338 0.54568 0.00025634 469.76897714661936 64.969 0.11062 64.969 64.952 65.063 0 0 0 NaN 15.847 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 71155 + 51594 27166 32249 32266 0.05202071414544207 VTAGPRPPVS 10 Unmodified _VTAGPRPPVS_ 0 0 0 ENSG00000160111|ENST00000443236|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 ENSG00000160111|ENST00000443236|CPAMD8 MSMS UPN46_class_I_Rep_3 1 490.77978515625 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 69.795 1 69.795 69.295 70.295 0 0 0 0 0.53105 1 16011 16011 6.2058 0.97511 1 51595 3853 32250 32267 59324 59324 0.054488761630864246 VTAIEIVSI 9 Unmodified _VTAIEIVSI_ 0 0 0 ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA MULTI-MSMS UPN47_class_I_Rep_1 2 472.7865905761719 2 472.786776 943.558998 0.15125 7.1507E-05 -0.24776 -0.00011714 -0.096514 -4.5631E-05 472.7866562272811 81.154 0.33848 84.641 84.522 84.86 3.4874 40 31 2 0 0 0 0.16559 1 20237 20237 24.021 0 1 96872 51596 3596 32251 32268 59325 59325 0.08496108871520391 VTAIEIVSI 9 Unmodified _VTAIEIVSI_ 0 0 0 ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA MSMS UPN47_class_I_Rep_2 3 472.7861633300781 2 472.786776 943.558998 NaN NaN NaN NaN NaN NaN NaN 81.287 1 84.671 84.171 85.171 3.3839 0 0 0 0.10315 1 20242 20242 24.021 0 1 51597 3596 32251 32268 59326 59326 0.08496108871520391 VTAIEIVSI 9 Unmodified _VTAIEIVSI_ 0 0 0 ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA MULTI-MSMS UPN47_class_I_Rep_3 4 472.786865234375 2 472.786776 943.558998 0.034245 1.6191E-05 -0.0083005 -3.9244E-06 0.025945 1.2266E-05 472.7867593775263 81.408 0.63686 84.731 84.543 85.18 3.3231 112 67 2 0 0 0 0.30034 1 20475 20475 13.906 0 1 191930 51598 3596 32251 32268 59327 59327 0.08496108871520391 VTAIEIVSI 9 Unmodified _VTAIEIVSI_ 0 0 0 ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA ENSG00000151617|ENST00000651419|EDNRA MSMS UPN47_class_I_Rep_3 4 472.7865905761719 2 472.786776 943.558998 NaN NaN NaN NaN NaN NaN NaN 81.206 1 84.529 84.029 85.029 3.3231 0 0 0 0.17222 1 20318 20318 18.146 0 1 51599 3596 32251 32268 59328 59328 0.08496108871520391 VTAKRQLRR 9 Unmodified _VTAKRQLRR_ 0 0 0 L1MC3_dup12991|chr22:40134102-40134565:+|1.8177523195877687|0.1106635751234255|4.04|151.0|10|2|sense L1MC3_dup12991|chr22:40134102-40134565:+|1.8177523195877687|0.1106635751234255|4.04|151.0|10|2|sense L1MC3_dup12991|chr22:40134102-40134565:+|1.8177523195877687|0.1106635751234255|4.04|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 564.35986328125 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 81.005 1 84.669 84.169 85.169 3.6635 0 0 0 0.4029 1 19171 19171 0 0 1 51600 11315 32252 32269 59329 59329 0.14642429230957532 VTASSLVKINL 11 Unmodified _VTASSLVKINL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_3 4 573.3519287109375 2 572.850438 1143.68632 -0.43625 -0.00024991 0.22678 0.00012991 -0.20947 -0.00012 572.8505031706576 13.359 0.43852 16.733 16.641 17.079 3.3734 100 53 3 0 0 0 0.68583 1 329 329 0 0 1 100410 51601 1297 32253 32270 59330 59330 0.12022829745751551 VTATAVLLIK 10 Unmodified _VTATAVLLIK_ 0 0 0 REV__ENST00000320954.10_2_3:33187460-33187940:+|nuORF REV__ENST00000320954.10_2_3:33187460-33187940:+|nuORF MSMS UPN48_class_I_Rep_3 7 514.84033203125 2 514.839342 1027.66413 NaN NaN NaN NaN NaN NaN NaN 52.859 1 56.457 55.957 56.957 3.5979 0 0 0 0.53105 1 10958 10958 1.4819 0 1 + 51602 21738 32254 32271 59331 59331 0.15140650067951356 VTATRQLLL 9 Unmodified _VTATRQLLL_ 0 0 0 nc|ENSG00000064763|Q96K12-2|FAR2;ENSG00000064763|ENST00000536681|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 MULTI-SECPEP UPN48_class_I_Rep_1 5 508.16815185546875 2 507.818941 1013.62333 0.21255 0.00010794 -0.70438 -0.0003577 -0.49183 -0.00024976 507.8184776028978 47.201 0.64798 50.723 50.337 50.985 3.5219 99 41 3 0 0 0 0.079811 1 9270 9270 22.658 3.2961 1 403330 51603 997 32255 32272 59332 59332 0.1170630874833023 VTATRQLLL 9 Unmodified _VTATRQLLL_ 0 0 0 nc|ENSG00000064763|Q96K12-2|FAR2;ENSG00000064763|ENST00000536681|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 MULTI-MATCH UPN48_class_I_Rep_2 6 2 507.818941 1013.62333 0.21674 0.00011007 -0.88584 -0.00044984 -0.66909 -0.00033978 507.81841021261073 46.872 0.71291 50.622 50.279 50.992 3.7494 -0.063573 -0.00011349 NaN 22.658 117 53 3 NaN NaN NaN NaN 0 NaN NaN 0 504350 51604 997 32255 32272 0.1170630874833023 VTATRQLLL 9 Unmodified _VTATRQLLL_ 0 0 0 nc|ENSG00000064763|Q96K12-2|FAR2;ENSG00000064763|ENST00000536681|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 nc|ENSG00000064763|Q96K12-2|FAR2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 507.818941 1013.62333 0.19697 0.00010003 -0.69388 -0.00035237 -0.49691 -0.00025234 507.81838112274073 47.075 0.63701 50.711 50.395 51.032 3.6363 0.025923 8.1466E-05 NaN 22.658 98 46 3 NaN NaN NaN NaN 0 NaN NaN 0 379330 51605 997 32255 32272 0.1170630874833023 VTAVGVDAVL 10 Unmodified _VTAVGVDAVL_ 0 0 0 ENST00000354336.7_1_22:21307442-21307709:+|nuORF ENST00000354336.7_1_22:21307442-21307709:+|nuORF ENST00000354336.7_1_22:21307442-21307709:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 472.27545166015625 2 472.276575 942.538597 -0.18058 -8.5284E-05 -0.56286 -0.00026582 -0.74344 -0.00035111 472.27605566937655 44.263 0.68181 47.618 47.313 47.995 3.3556 87 43 3 0 0 0 0.47413 2 9273 9273;9284 13.906 0 1 180940 51606 6276 32256 32273 59333;59334 59333 0.06502938211713172 VTCSRAIKI 9 Unmodified _VTCSRAIKI_ 0 0 0 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 MSMS UPN46_class_I_Rep_3 1 495.7906799316406 2 495.791869 989.569186 NaN NaN NaN NaN NaN NaN NaN 14.093 1 14.093 13.593 14.593 0 0 0 0 0.4029 1 550 550 0 0 1 51607 5074 32257 32274 59335 59335 0.07398393325092911 VTCSRAIKI 9 Unmodified _VTCSRAIKI_ 0 0 0 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 ENSG00000184956|ENST00000421673|MUC6 MSMS UPN46_class_I_Rep_3 1 495.7912292480469 2 495.791869 989.569186 NaN NaN NaN NaN NaN NaN NaN 14.263 1 14.263 13.763 14.763 0 0 0 0 0.4029 1 590 590 0 0 1 51608 5074 32257 32274 59336 59336 0.07398393325092911 VTCYSHTPRP 10 Unmodified _VTCYSHTPRP_ 0 0 0 REV__ENST00000520701.5_1_5:150867854-150868163:+|nuORF REV__ENST00000520701.5_1_5:150867854-150868163:+|nuORF MSMS UPN47_class_I_Rep_3 4 580.7803955078125 2 580.77949 1159.54443 NaN NaN NaN NaN NaN NaN NaN 32.316 1 35.602 35.102 36.102 3.2867 0 0 0 0.53105 1 5622 5622 3.2813 0.28607 1 + 51609 22784 32258 32275 59337 59337 -0.02896286548275384 VTDAVALRV 9 Unmodified _VTDAVALRV_ 0 0 0 ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP ENST00000442885.2_1_11:65655295-65655958:-|nuORF ENST00000442885.2_1_11:65655295-65655958:-|nuORF MSMS UPN47_class_I_Rep_1 2 472.2756652832031 2 472.282192 942.549831 NaN NaN NaN NaN NaN NaN NaN 44.318 1 48.013 47.513 48.513 3.6951 0 0 0 0.15288 1 9203 9203 19.362 2.249 1 51610 4578 32259 32276 59338 59338 0.0762576030585933 VTDAWYPHNA 10 Unmodified _VTDAWYPHNA_ 0 0 0 REV__ENST00000457179.5_1_22:22317029-22324763:-|nuORF REV__ENST00000457179.5_1_22:22317029-22324763:-|nuORF MSMS UPN47_class_I_Rep_1 2 587.271484375 2 587.269813 1172.52507 NaN NaN NaN NaN NaN NaN NaN 54.962 1 58.463 57.963 58.963 3.5014 0 0 0 0.53105 1 12438 12438 2.9952 0.26005 1 + 51611 18086 32260 32277 59339 59339 -0.05428919567521007 VTDESGDESDS 11 Unmodified _VTDESGDESDS_ 0 0 0 REV__ENSG00000115363|ENST00000393913|EVA1A REV__ENSG00000115363|ENST00000393913|EVA1A MSMS UPN47_class_I_Rep_2 3 570.7127685546875 2 570.712387 1139.41022 NaN NaN NaN NaN NaN NaN NaN 18.082 1 21.47 20.97 21.97 3.3875 0 0 0 0.38417 1 1470 1470 0 0 1 + 51612 18558 32261 32278 59340 59340 -0.15390738350629363 VTDGAILGKLY 11 Unmodified _VTDGAILGKLY_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 575.3292846679688 2 575.329339 1148.64412 0.38012 0.0002187 -0.019104 -1.0991E-05 0.36102 0.00020771 575.3292302458558 58.585 0.66745 62.002 61.676 62.344 3.4171 74 43 2 0 0 0 0.25301 1 13545 13545 37.075 14.417 1 247760 51613 942 32262 32279 59341 59341 0.0757485433734928 VTDGAILGKLY 11 Unmodified _VTDGAILGKLY_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 575.3297729492188 2 575.329339 1148.64412 0.34577 0.00019893 -0.23887 -0.00013743 0.1069 6.1502E-05 575.329130596371 58.903 0.68646 62.069 61.756 62.442 3.1658 66 39 2 0 0 0 0.18461 2 13698 13698;13812 40.725 15.843 1 230310 51614 942 32262 32279 59342;59343 59342 0.0757485433734928 VTDGAILGKLY 11 Unmodified _VTDGAILGKLY_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 575.329339 1148.64412 0.51921 0.00029871 -0.37267 -0.00021441 0.14653 8.4306E-05 575.3290828203241 58.848 0.66987 62.129 61.76 62.429 3.2818 0.062754 -0.0002076 NaN 40.725 73 41 2 NaN NaN NaN NaN 0 NaN NaN 0 150590 51615 942 32262 32279 0.0757485433734928 VTDHLGVVYY 10 Unmodified _VTDHLGVVYY_ 0 0 0 ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719.15,DNAJB12,chr10,-,I2.1,72345128,72353341|31|8.52|2|intron;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENST00000473051.1_1_10:74095570-74096546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 583.2971801757812 2 583.298039 1164.58152 0.30077 0.00017544 -0.37595 -0.00021929 -0.075175 -4.385E-05 583.2977241236226 52.887 0.65536 56.446 56.157 56.813 3.5585 65 37 2 0 0 0 0.40227 5 11843 11751;11793;11837;11843;11884 19.257 9.1831 1 211440 51616 3520 32263 32280 59344;59345;59346;59347;59348 59347 0.005817082691464748 VTDHLGVVYY 10 Unmodified _VTDHLGVVYY_ 0 0 0 ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719.15,DNAJB12,chr10,-,I2.1,72345128,72353341|31|8.52|2|intron;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENST00000473051.1_1_10:74095570-74096546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 583.2979736328125 2 583.298039 1164.58152 0.51653 0.00030129 -0.42098 -0.00024556 0.095548 5.5733E-05 583.2977631976011 53.112 0.73376 56.438 56.145 56.879 3.3266 92 44 3 0 0 0 0.38932 5 11947 11857;11906;11947;11990;12003 20.454 9.6297 1 186710 51617 3520 32263 32280 59349;59350;59351;59352;59353 59351 0.005817082691464748 VTDHLGVVYY 10 Unmodified _VTDHLGVVYY_ 0 0 0 ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719.15,DNAJB12,chr10,-,I2.1,72345128,72353341|31|8.52|2|intron;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENST00000473051.1_1_10:74095570-74096546:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 583.2980346679688 2 583.298039 1164.58152 0.48663 0.00028385 -0.21379 -0.00012471 0.27283 0.00015914 583.2977797637934 53.332 0.80103 56.527 56.204 57.005 3.1948 82 46 3 0 0 0 0.38932 4 12004 11955;12004;12089;12136 20.454 5.7447 1 155550 51618 3520 32263 32280 59354;59355;59356;59357 59355 0.005817082691464748 VTDLVLQVN 9 Unmodified _VTDLVLQVN_ 0 0 0 nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 nc|ENSG00000143127|O75578-3|ITGA10 MULTI-MSMS UPN47_class_I_Rep_2 3 500.78741455078125 2 500.787307 999.560061 0.28735 0.0001439 0.15449 7.7368E-05 0.44184 0.00022127 500.78722588848905 54.123 0.83188 57.441 57.178 58.01 3.3187 104 44 3 0 0 0 0.36392 1 12328 12328 10.074 0.6908 1 568800 51619 3275 32264 32281 59358 59358 0.060263232404167866 VTDSIRDEY 9 Unmodified _VTDSIRDEY_ 0 0 0 ENST00000547548.1_1_12:32866256-32875568:+|nuORF;nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L ENST00000547548.1_1_12:32866256-32875568:+|nuORF ENST00000547548.1_1_12:32866256-32875568:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 549.2592163085938 2 549.259111 1096.50367 -0.018354 -1.0081E-05 0.2781 0.00015275 0.25974 0.00014267 549.2591588889076 32.459 0.74411 36.172 35.899 36.643 3.7131 157 62 3 0 0 0 0.0057368 6 5564 5523;5564;5604;5639;5677;5712 91.085 45.385 1 347340 51620 1303 32265 32282 59359;59360;59361;59362;59363;59364 59360 -0.04072349386888163 VTDSIRDEY 9 Unmodified _VTDSIRDEY_ 0 0 0 ENST00000547548.1_1_12:32866256-32875568:+|nuORF;nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L ENST00000547548.1_1_12:32866256-32875568:+|nuORF ENST00000547548.1_1_12:32866256-32875568:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 549.2588500976562 2 549.259111 1096.50367 0.028602 1.571E-05 0.20752 0.00011398 0.23612 0.00012969 549.2591418879028 32.656 0.75545 36.111 35.851 36.606 3.4547 138 59 3 0 0 0 0.01093 5 5708 5625;5668;5708;5751;5790 69.338 36.553 1 370040 51621 1303 32265 32282 59365;59366;59367;59368;59369 59367 -0.04072349386888163 VTDSIRDEY 9 Unmodified _VTDSIRDEY_ 0 0 0 ENST00000547548.1_1_12:32866256-32875568:+|nuORF;nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L ENST00000547548.1_1_12:32866256-32875568:+|nuORF ENST00000547548.1_1_12:32866256-32875568:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.2590942382812 2 549.259111 1096.50367 -0.1497 -8.2226E-05 0.31416 0.00017255 0.16445 9.0328E-05 549.2591731879318 32.899 0.79136 36.185 35.837 36.628 3.2867 157 62 3 0 0 0 0.0061843 6 5813 5729;5771;5813;5856;5870;5893 75.571 42.785 1 308880 51622 1303 32265 32282 59370;59371;59372;59373;59374;59375 59372 -0.04072349386888163 VTDSPAVHR 9 Unmodified _VTDSPAVHR_ 0 0 0 REV__ENSG00000198730|ENST00000361367|CTR9 REV__ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS UPN48_class_I_Rep_3 7 491.2593994140625 2 491.259248 980.503943 0.12573 6.1765E-05 -0.37466 -0.00018406 -0.24893 -0.00012229 491.25899696729545 20.356 0.90181 24.023 23.515 24.417 3.6667 183 91 3 0 0 0 0.41259 2 1624 1624;1826 7.2892 2.5332 1 163100 + 51623 21143 32266 32283 59376;59377 59376 0.012911151236153273 VTDSQADFF 9 Unmodified _VTDSQADFF_ 0 0 0 ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ENSG00000100852|ENST00000345122|ARHGAP5 ENSG00000100852|ENST00000345122|ARHGAP5 MSMS UPN47_class_I_Rep_1 2 515.2301025390625 2 515.229822 1028.44509 NaN NaN NaN NaN NaN NaN NaN 63.909 1 67.264 66.764 67.764 3.3557 0 0 0 0.37692 1 15153 15153 6.2058 0 1 51624 1534 32267 32284 59378 59378 -0.0679940596137385 VTDYEVLH 8 Unmodified _VTDYEVLH_ 0 0 0 nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8 nc|ENSG00000124721|Q96JB1-2|DNAH8 nc|ENSG00000124721|Q96JB1-2|DNAH8 MSMS UPN47_class_I_Rep_1 2 488.242919921875 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 36.261 1 39.93 39.43 40.43 3.6692 0 0 0 0.40604 1 6748 6748 2.5775 0 1 51625 2483 32268 32285 59379 59379 -0.01734511719087095 VTEDGNQHVY 10 Unmodified _VTEDGNQHVY_ 0 0 0 nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1 nc|ENSG00000121350|Q8WU10-2|PYROXD1 nc|ENSG00000121350|Q8WU10-2|PYROXD1 MULTI-MSMS UPN47_class_I_Rep_1 2 581.2608032226562 2 581.262185 1160.50982 -0.096578 -5.6137E-05 -0.15867 -9.2227E-05 -0.25524 -0.00014836 581.2619793776555 23.337 0.36539 27.041 26.834 27.199 3.7042 35 33 2 0 0 0 0.55148 1 2870 2870 5.2969 1.3525 1 48873 51626 2354 32269 32286 59380 59380 -0.06401831155380933 VTEEPQRLFY 10 Unmodified _VTEEPQRLFY_ 0 0 0 ENSG00000104081|ENST00000354670|BMF;nc|ENSG00000104081|Q96LC9-3|BMF;nc|ENSG00000104081|Q96LC9-2|BMF ENSG00000104081|ENST00000354670|BMF ENSG00000104081|ENST00000354670|BMF MULTI-MSMS UPN47_class_I_Rep_3 4 641.3265991210938 2 641.327328 1280.6401 0.55252 0.00035435 -0.32005 -0.00020526 0.23247 0.00014909 641.3271947716001 51.146 0.4201 54.362 54.131 54.552 3.2163 23 19 2 0 0 0 0.56155 1 11363 11363 2.7352 0.89096 1 58233 51627 1676 32270 32287 59381 59381 0.011007648436134332 VTEIDQDKY 9 Unmodified _VTEIDQDKY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_1 2 555.7694091796875 2 555.769311 1109.52407 -0.042292 -2.3505E-05 0.22647 0.00012587 0.18418 0.00010236 555.7693555186319 30.378 1.2092 34.123 33.765 34.974 3.7449 224 95 4 0 0 0 0.0047467 7 4997 4879;4924;4962;4997;5036;5074;5118 114.19 54.113 1 830250 51628 5336 32271 32288 59382;59383;59384;59385;59386;59387;59388 59385 -0.02631178727074257 VTEIDQDKY 9 Unmodified _VTEIDQDKY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_2 3 555.7693481445312 2 555.769311 1109.52407 0.046326 2.5747E-05 0.14006 7.7843E-05 0.18639 0.00010359 555.7693137966066 30.539 0.97116 34.021 33.674 34.645 3.4821 213 75 4 0 0 0 0.0098153 7 5077 4960;5002;5039;5077;5114;5153;5200 107.56 52.194 1 871700 51629 5336 32271 32288 59389;59390;59391;59392;59393;59394;59395 59392 -0.02631178727074257 VTEIDQDKY 9 Unmodified _VTEIDQDKY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS UPN47_class_I_Rep_2 3 555.7701416015625 2 555.769311 1109.52407 0.046217 2.5686E-05 0.7069 0.00039288 0.75312 0.00041856 555.769816157907 31.265 0.20287 34.734 34.632 34.835 3.4691 29 20 2 0 0 0 0.45441 1 5257 5257 4.897 1.6157 1 56200 51630 5336 32271 32288 59396 59396 -0.02631178727074257 VTEIDQDKY 9 Unmodified _VTEIDQDKY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 555.769311 1109.52407 -0.17632 -9.7993E-05 0.3393 0.00018857 0.16298 9.0578E-05 555.7694288717876 30.675 1.3263 33.986 33.651 34.977 3.3116 -0.057283 0.00010029 NaN 114.19 270 108 4 NaN NaN NaN NaN 0 NaN NaN 0 830640 51631 5336 32271 32288 -0.02631178727074257 VTEIITVKY 9 Unmodified _VTEIITVKY_ 0 0 0 REV__L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|23|2|sense REV__L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|23|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 532.78173828125 2 533.313158 1064.61176 0.41765 0.00022274 -0.32059 -0.00017098 0.097054 5.176E-05 533.3128761063567 56.546 0.53428 60.047 59.886 60.421 3.5014 57 43 2 0 0 0 0.118 1 12246 12246 10.074 0 1 187310 + 51632 28279 32272 32289 59397 59397 0.08204066934331422 VTEIITVKY 9 Unmodified _VTEIITVKY_ 0 0 0 REV__L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|23|2|sense REV__L1ME4b_dup20478|chr20:2970137-2971317:-|1.2005492927749657|0.0164330369436097|6.19|148.0|23|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 532.7813720703125 2 533.313158 1064.61176 0.42961 0.00022912 -0.28435 -0.00015165 0.14526 7.7469E-05 533.3129359102759 56.443 0.56676 59.985 59.778 60.345 3.5427 83 51 2 0 0 0 0.118 1 12112 12112 10.074 0 1 191100 + 51633 28279 32272 32289 59398 59398 0.08204066934331422 VTEKIRSF 8 Unmodified _VTEKIRSF_ 0 0 0 REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|34|2|sense REV__L1MEf_dup9778|chr15:56221459-56223566:-|3.470977014923209|0.0537815984858137|6.01|151.0|34|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.2820129394531 2 490.282192 978.549831 -0.24726 -0.00012123 0.07543 3.6982E-05 -0.17183 -8.4246E-05 490.28223565006334 41.137 0.71479 44.809 44.476 45.19 3.6719 100 57 2 0 0 0 0.82752 1 8289 8289 4.756 0 1 142450 + 51634 28705 32273 32290 59399 59399 0.05969760305856653 VTELDKQLL 9 Unmodified _VTELDKQLL_ 0 0 0 REV__ENST00000373731.6_1_6:36442658-36442763:+|nuORF REV__ENST00000373731.6_1_6:36442658-36442763:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 529.80712890625 2 529.808239 1057.60193 0.17253 9.141E-05 -0.47851 -0.00025352 -0.30598 -0.00016211 529.8079619027118 69.1 0.17496 72.376 72.312 72.487 3.2761 18 14 2 0 0 0 0.47493 1 16753 16753 3.2813 0 1 157940 + 51635 21992 32274 32291 59400 59400 0.07542878928961727 VTELDKQLL 9 Unmodified _VTELDKQLL_ 0 0 0 REV__ENST00000373731.6_1_6:36442658-36442763:+|nuORF REV__ENST00000373731.6_1_6:36442658-36442763:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 529.808239 1057.60193 0.3793 0.00020096 -0.14177 -7.511E-05 0.23753 0.00012584 529.8083517313837 69.321 0.060204 72.525 72.485 72.545 3.2044 0.074569 0.00025596 NaN 3.2813 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 59216 + 51636 21992 32274 32291 0.07542878928961727 VTELHVISY 9 Unmodified _VTELHVISY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS UPN47_class_I_Rep_1 2 530.787353515625 2 530.787307 1059.56006 0.21497 0.0001141 0.049191 2.611E-05 0.26416 0.00014021 530.787272934069 50.397 1.0599 54.025 53.634 54.694 3.6285 154 50 4 0 0 0 0.00033249 8 11053 10967;10971;11014;11053;11095;11138;11187;11232 166.45 91.519 1 1434300 51637 4649 32275 32292 59401;59402;59403;59404;59405;59406;59407;59408 59404 0.032663232404502196 VTELHVISY 9 Unmodified _VTELHVISY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS UPN47_class_I_Rep_2 3 530.787353515625 2 530.787307 1059.56006 0.27804 0.00014758 0.018335 9.7319E-06 0.29638 0.00015731 530.7872288315199 50.75 1.2282 54.089 53.618 54.846 3.3386 185 63 4 0 0 0 0.00031896 9 11163 11079;11125;11163;11203;11244;11284;11323;11365;11371 197.17 122.74 1 1276500 51638 4649 32275 32292 59409;59410;59411;59412;59413;59414;59415;59416;59417 59411 0.032663232404502196 VTELHVISY 9 Unmodified _VTELHVISY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS UPN47_class_I_Rep_3 4 530.7872924804688 2 530.787307 1059.56006 0.47326 0.0002512 -0.22812 -0.00012108 0.24514 0.00013012 530.7871146673075 50.909 1.2628 54.125 53.643 54.906 3.2163 191 66 4 0 0 0 0.0013614 7 11292 11208;11251;11292;11332;11373;11414;11452 152.41 91.055 1 1489300 51639 4649 32275 32292 59418;59419;59420;59421;59422;59423;59424 59420 0.032663232404502196 VTELLLHM 8 Unmodified _VTELLLHM_ 0 0 0 Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|50|2|sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|50|2|sense Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|50|2|sense MSMS UPN48_class_I_Rep_2 6 478.2693176269531 2 478.267696 954.520839 NaN NaN NaN NaN NaN NaN NaN 48.383 1 52.103 51.603 52.603 3.7202 0 0 0 0.40604 1 9661 9661 2.5775 0 1 51640 540 32276 32293 59425 59425 0.04175899685208151 VTEMTKGKGF 10 Unmodified _VTEMTKGKGF_ 0 0 0 REV__L1MC2_dup512|chr2:32123273-32125206:+|1.252688891571788|0.0355894059835579|5.14|151.0|45|2|sense REV__L1MC2_dup512|chr2:32123273-32125206:+|1.252688891571788|0.0355894059835579|5.14|151.0|45|2|sense MSMS UPN48_class_I_Rep_2 6 549.2855224609375 2 549.286617 1096.55868 NaN NaN NaN NaN NaN NaN NaN 57.028 1 60.558 60.058 61.058 3.5305 0 0 0 0.53105 1 12299 12299 9.3831 2.66 1 + 51641 26682 32277 32294 59426 59426 0.014263658800018675 VTEPKEAQSH 10 Unmodified _VTEPKEAQSH_ 0 0 0 REV__LTR1D_dup36|chr2:197090563-197091411:+|1.9939760067551304|0.1309014323417539|3.93|151.0|1|1|sense REV__LTR1D_dup36|chr2:197090563-197091411:+|1.9939760067551304|0.1309014323417539|3.93|151.0|1|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 562.7593383789062 2 563.280377 1124.5462 -0.17597 -9.9122E-05 -0.87941 -0.00049536 -1.0554 -0.00059448 563.7809866597473 30.671 0.5351 33.983 33.706 34.241 3.3116 69 41 2 0 0 0 0.84575 1 5148 5148 8.1555 0 1 83066 + 51642 30872 32278 32295 59427 59427 -0.011089542586660173 VTERLREV 8 Unmodified _VTERLREV_ 0 0 0 L1MD3_dup2240|chr7:157353266-157353583:-|1.1416820198232362|0.0078743422928664|7.18|151.0|14|3|sense L1MD3_dup2240|chr7:157353266-157353583:-|1.1416820198232362|0.0078743422928664|7.18|151.0|14|3|sense L1MD3_dup2240|chr7:157353266-157353583:-|1.1416820198232362|0.0078743422928664|7.18|151.0|14|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.2906799316406 2 501.290548 1000.56654 0.29503 0.0001479 0.18174 9.1107E-05 0.47678 0.000239 501.290495717398 80.261 0.77664 80.261 79.71 80.487 0 181 72 4 0 0 0 0.82752 2 18863 18863;18934 9.3474 0 1 898770 51643 12065 32279 32296 59428;59429 59428 0.06628261191804086 VTETMREKI 9 Unmodified _VTETMREKI_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS UPN47_class_I_Rep_2 3 553.7973022460938 2 553.797349 1105.58014 0.042533 2.3555E-05 0.025286 1.4003E-05 0.067819 3.7558E-05 553.7974198092577 31.704 1.1753 35.173 34.772 35.947 3.4691 200 89 3 0 0 0 0.43982 1 5291 5291 5.7319 0 1 539800 51644 1375 32280 32297 59430 59430 0.03157750908735579 VTETMREKI 9 Unmodified _VTETMREKI_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MSMS UPN47_class_I_Rep_3 4 553.7978515625 2 553.797349 1105.58014 NaN NaN NaN NaN NaN NaN NaN 38.448 1 41.689 41.189 42.189 3.2414 0 0 0 0.38916 1 7486 7486 3.2813 0 1 51645 1375 32280 32297 59431 59431 0.03157750908735579 VTETNVFFY 9 Unmodified _VTETNVFFY_ 0 0 0 nc|ENSG00000176986|P53992-2|SEC24C;ENSG00000176986|ENST00000345254|SEC24C nc|ENSG00000176986|P53992-2|SEC24C nc|ENSG00000176986|P53992-2|SEC24C MULTI-MSMS UPN47_class_I_Rep_1 2 560.2713012695312 2 560.27149 1118.52843 0.36939 0.00020696 -0.17265 -9.673E-05 0.19674 0.00011023 560.7729819883875 70.594 0.60712 73.966 73.715 74.323 3.3713 96 55 2 0 0 0 0.061943 2 17158 17158;17201 43.858 0 1 188280 51646 4776 32281 32298 59432;59433 59432 -0.026096695135038317 VTETNVFFY 9 Unmodified _VTETNVFFY_ 0 0 0 nc|ENSG00000176986|P53992-2|SEC24C;ENSG00000176986|ENST00000345254|SEC24C nc|ENSG00000176986|P53992-2|SEC24C nc|ENSG00000176986|P53992-2|SEC24C MULTI-MSMS UPN47_class_I_Rep_2 3 560.271484375 2 560.27149 1118.52843 0.41556 0.00023282 -0.14881 -8.3374E-05 0.26675 0.00014945 560.2712733708554 70.86 0.6096 74.143 73.869 74.479 3.2828 104 57 2 0 0 0 0.023254 2 17310 17273;17310 61.357 0 1 149900 51647 4776 32281 32298 59434;59435 59435 -0.026096695135038317 VTETNVFFY 9 Unmodified _VTETNVFFY_ 0 0 0 nc|ENSG00000176986|P53992-2|SEC24C;ENSG00000176986|ENST00000345254|SEC24C nc|ENSG00000176986|P53992-2|SEC24C nc|ENSG00000176986|P53992-2|SEC24C MULTI-MSMS UPN47_class_I_Rep_3 4 560.27099609375 2 560.27149 1118.52843 0.44656 0.0002502 -0.16515 -9.2532E-05 0.28141 0.00015767 560.2712552263192 70.9 0.70373 74.112 73.786 74.49 3.2113 89 60 2 0 0 0 0.047711 3 17356 17313;17356;17385 49.933 0 1 161900 51648 4776 32281 32298 59436;59437;59438 59437 -0.026096695135038317 VTEVELLLY 9 Unmodified _VTEVELLLY_ 0 0 0 ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 MULTI-MSMS UPN47_class_I_Rep_1 2 539.8060302734375 2 539.805165 1077.59578 0.44387 0.0002396 0.081662 4.4082E-05 0.52553 0.00028369 539.805172979363 81.795 0.63339 85.307 84.982 85.615 3.5122 100 72 2 0 0 0 0.035561 2 20417 20417;20451 54.774 18.307 1 340090 51649 1755 32282 32299 59439;59440 59439 0.060083606974330905 VTEVELLLY 9 Unmodified _VTEVELLLY_ 0 0 0 ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 MULTI-MSMS UPN47_class_I_Rep_2 3 539.8052978515625 2 539.805165 1077.59578 0.47236 0.00025498 0.16894 9.1197E-05 0.64131 0.00034618 539.8052439550352 81.912 0.5534 85.296 84.983 85.537 3.3839 83 62 2 0 0 0 0.051515 1 20415 20415 48.346 11.88 1 211620 51650 1755 32282 32299 59441 59441 0.060083606974330905 VTEVELLLY 9 Unmodified _VTEVELLLY_ 0 0 0 ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 MULTI-MSMS UPN47_class_I_Rep_3 4 539.8054809570312 2 539.805165 1077.59578 0.4554 0.00024583 0.23315 0.00012585 0.68855 0.00037168 539.8052444723886 81.987 0.75215 85.32 85.034 85.786 3.3333 207 88 3 0 0 0 0.051515 4 20534 20534;20565;20599;20635 48.346 12.302 1 361670 51651 1755 32282 32299 59442;59443;59444;59445 59442 0.060083606974330905 VTEVELLLY 9 Unmodified _VTEVELLLY_ 0 0 0 ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 ENSG00000105732|ENST00000359044|ZNF574 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 539.805165 1077.59578 0.47506 0.00025644 -0.27196 -0.00014681 0.2031 0.00010963 539.8051432225666 82.199 0.1214 85.597 85.565 85.687 3.3984 0.14517 -0.0003489 NaN 54.774 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 50939 51652 1755 32282 32299 0.060083606974330905 VTEYVPQAL 9 Unmodified _VTEYVPQAL_ 0 0 0 REV__ENSG00000167264|ENST00000565263|DUS2 REV__ENSG00000167264|ENST00000565263|DUS2 MULTI-MSMS UPN47_class_I_Rep_3 4 510.274658203125 2 510.274032 1018.53351 0.30449 0.00015537 0.56814 0.00028991 0.87263 0.00044528 510.2743149711451 85.686 0.30617 89.058 88.882 89.188 3.3716 56 38 2 0 0 0 0.37599 1 21472 21472 9.3831 0.63772 1 67993 + 51653 20214 32283 32300 59446 59446 0.02498634349092299 VTFCSFYLY 9 Unmodified _VTFCSFYLY_ 0 0 0 L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|159|2|anti-sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|159|2|anti-sense L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|159|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 571.7648315429688 2 571.764986 1141.51542 0.046321 2.6485E-05 -0.79412 -0.00045405 -0.7478 -0.00042757 571.7645117228575 30.508 0.54635 33.99 33.735 34.282 3.4821 67 43 2 0 0 0 0.48643 1 4989 4989 2.0598 0.57785 1 99937 51654 8578 32284 32301 59447 59447 -0.04967823897254675 VTFHLFDHV 9 Unmodified _VTFHLFDHV_ 0 0 0 nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L MSMS UPN47_class_I_Rep_1 2 557.7890625 2 557.787641 1113.56073 NaN NaN NaN NaN NaN NaN NaN 40.991 1 44.663 44.163 45.163 3.6719 0 0 0 0.38639 1 8185 8185 3.9444 1.6417 1 51655 4277 32285 32302 59448 59448 0.008491626801287566 VTFKSILF 8 Unmodified _VTFKSILF_ 0 0 0 ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000550479.1_1_12:104332030-104335334:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENST00000548462.5_1_12:104324233-104336580:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 477.78656005859375 2 477.786579 953.558604 0.23754 0.00011349 -0.0068507 -3.2732E-06 0.23069 0.00011022 477.78641183684465 68.029 0.87669 71.538 71.124 72.001 3.5083 169 79 3 0 0 0 0.82752 1 15641 15641 45.7 1.2926 1 638630 51656 4254 32286 32303 59449 59449 0.07996733942343326 VTFLMLAVS 9 Unmodified _VTFLMLAVS_ 0 0 0 nc|ENSG00000101474|Q9HDC9-2|APMAP;ENSG00000101474|ENST00000217456|APMAP nc|ENSG00000101474|Q9HDC9-2|APMAP nc|ENSG00000101474|Q9HDC9-2|APMAP MSMS UPN47_class_I_Rep_2 3 490.7779541015625 2 490.777896 979.54124 NaN NaN NaN NaN NaN NaN NaN 63.512 1 66.768 66.268 67.268 3.2558 0 0 0 0.38478 1 15073 15073 4.3292 0 1 51657 1576 32287 32304 59450 59450 0.050650703450060064 VTFLSKLF 8 Unmodified _VTFLSKLF_ 0 0 0 REV__L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|46|2|anti-sense REV__L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 477.7864685058594 2 477.786579 953.558604 0.16391 7.8314E-05 -0.02287 -1.0927E-05 0.14104 6.7387E-05 477.78641955069946 68.183 0.80904 71.635 71.216 72.025 3.4517 166 68 3 0 0 0 0.82752 2 15782 15698;15782 34.402 0 1 561570 + 51658 24645 32288 32305 59451;59452 59452 0.07996733942320589 VTFLSKLF 8 Unmodified _VTFLSKLF_ 0 0 0 REV__L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|46|2|anti-sense REV__L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 477.78643798828125 2 477.786579 953.558604 0.23754 0.00011349 -0.0068507 -3.2732E-06 0.23069 0.00011022 477.78641183684465 68.029 0.87669 71.538 71.124 72.001 3.5083 169 79 3 0 0 0 0.82752 3 15713 15602;15677;15713 41.84 0 1 638630 + 51659 24645 32288 32305 59453;59454;59455 59455 0.07996733942320589 VTFLSKLF 8 Unmodified _VTFLSKLF_ 0 0 0 REV__L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|46|2|anti-sense REV__L1M5_dup24459|chr7:116899795-116900480:+|1.1045649980709562|0.0454947227435876|4.6|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 477.7865905761719 2 477.786579 953.558604 0.27384 0.00013084 -0.10215 -4.8808E-05 0.17169 8.2032E-05 477.7863599123875 67.906 0.77969 71.413 70.968 71.748 3.5077 157 71 3 0 0 0 0.82752 5 15560 15483;15515;15522;15560;15594 49.933 0 1 676090 + 51660 24645 32288 32305 59456;59457;59458;59459;59460 59459 0.07996733942320589 VTFLTNEGNY 10 Unmodified _VTFLTNEGNY_ 0 0 0 REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|109|1|anti-sense REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|109|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 579.277099609375 2 579.277303 1156.54005 0.51966 0.00030103 -0.29953 -0.00017351 0.22013 0.00012752 579.2771326890671 58.389 0.74963 61.671 61.377 62.127 3.2818 78 43 3 0 0 0 0.54466 1 13579 13579 6.2058 0.47393 1 242390 + 51661 17257 32289 32306 59461 59461 -0.03195472490187967 VTFLWRRR 8 Unmodified _VTFLWRRR_ 0 0 0 L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|364|3|anti-sense MSMS UPN46_class_I_Rep_3 1 567.3375854492188 2 567.338167 1132.66178 NaN NaN NaN NaN NaN NaN NaN 91.187 1 91.187 90.687 91.687 0 0 0 0 0.40746 1 22014 22014 0.69038 0 1 51662 14602 32290 32307 59462 59462 0.10075659173480744 VTFQNRKP 8 Unmodified _VTFQNRKP_ 0 0 0 L1MC_dup2688|chr5:177649786-177650522:-|1.7217957973933198|0.0182233169999843|6.56|151.0|18|3|sense L1MC_dup2688|chr5:177649786-177650522:-|1.7217957973933198|0.0182233169999843|6.56|151.0|18|3|sense L1MC_dup2688|chr5:177649786-177650522:-|1.7217957973933198|0.0182233169999843|6.56|151.0|18|3|sense MSMS UPN47_class_I_Rep_3 4 495.2869567871094 2 495.279983 988.545414 NaN NaN NaN NaN NaN NaN NaN 62.647 1 65.816 65.316 66.316 3.1698 0 0 0 0.388 1 14867 14867 12.532 0 1 51663 11053 32291 32308 59463 59463 0.050682958829384006 VTFSGSSFLLF 11 Unmodified _VTFSGSSFLLF_ 0 0 0 REV__L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|74|1|anti-sense REV__L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|74|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 602.72900390625 2 602.816064 1203.61758 0.54265 0.00032712 0.0088141 5.3133E-06 0.55146 0.00033243 602.8159600620238 68.515 0.29111 68.515 68.473 68.764 0 63 30 3 0 0 0 0.59712 1 15716 15716 5.2969 0 1 367850 + 51664 25652 32292 32309 59464 59464 0.023911654459880083 VTFSGSSFLLF 11 Unmodified _VTFSGSSFLLF_ 0 0 0 REV__L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|74|1|anti-sense REV__L1MB1_dup1885|chr5:131719917-131721494:+|1.0953310419007938|0.1442019183038119|2.93|150.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 602.8159790039062 2 602.816064 1203.61758 0.42749 0.0002577 0.13859 8.3541E-05 0.56608 0.00034124 602.8160203021479 62.946 1.2005 66.202 65.741 66.941 3.2558 208 83 4 0 0 0 0.65559 1 15095 15095 2.7352 0 1 628910 + 51665 25652 32292 32309 59465 59465 0.023911654459880083 VTFSLHSPL 9 Unmodified _VTFSLHSPL_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MSMS UPN47_class_I_Rep_1 2 500.77630615234375 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 73.566 1 76.952 76.452 77.452 3.3861 0 0 0 0.36505 1 18068 18068 7.2892 0 1 + 51666 19304 32293 32310 59466 59466 0.03914357931569157 VTGAVERT 8 Unmodified _VTGAVERT_ 0 0 0 ENST00000592625.5_1_19:12075961-12087880:+|nuORF ENST00000592625.5_1_19:12075961-12087880:+|nuORF ENST00000592625.5_1_19:12075961-12087880:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 416.7297058105469 2 416.729792 831.445031 -0.13851 -5.7721E-05 0.13018 5.4251E-05 -0.0083252 -3.4694E-06 416.7297565023511 31.707 0.85128 31.707 31.234 32.085 0 96 60 2 0 0 0 0.82752 1 5377 5377 15.847 1.0089 1 197420 51667 7634 32294 32311 59467 59467 0.022566388292943884 VTGIIGKWHL 10 Unmodified _VTGIIGKWHL_ 0 0 0 ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG MULTI-MSMS UPN47_class_I_Rep_1 2 562.8369750976562 2 562.334759 1122.65496 0.50613 0.00028462 -0.23229 -0.00013062 0.27385 0.00015399 562.33431414426 110.48 0.1964 114.06 114.02 114.21 3.5835 47 24 3 0 0 0 0.55148 1 27233 27233 5.2969 0 1 222350 51668 3213 32295 32312 59468 59468 0.09854301502286944 VTGKGKPIGL 10 Unmodified _VTGKGKPIGL_ 0 0 0 L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|84|3|sense L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|84|3|sense L1PA7_dup3817|chr4:169546049-169549421:-|2.141501538391253|0.1052239800856068|4.35|151.0|84|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 485.3080749511719 2 485.30821 968.601866 0.16018 7.7737E-05 -0.18756 -9.1026E-05 -0.027383 -1.3289E-05 485.30803157864375 48.497 1.1296 52.215 51.766 52.896 3.7175 182 79 3 0 0 0 0.27684 1 9613 9613 36.127 1.7253 1 1253200 51669 14814 32296 32313 59469 59469 0.11630923719599195 VTGLTRQR 8 Unmodified _VTGLTRQR_ 0 0 0 L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|67|3|sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|67|3|sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|67|3|sense MSMS UPN48_class_I_Rep_1 5 465.77801513671875 2 465.777608 929.540663 NaN NaN NaN NaN NaN NaN NaN 72.737 1 76.211 75.711 76.711 3.4732 0 0 0 0.40625 1 17092 17092 2.3027 0 1 51670 8914 32297 32314 59470 59470 0.07307411740180214 VTGLTRQR 8 Unmodified _VTGLTRQR_ 0 0 0 L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|67|3|sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|67|3|sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|67|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 465.77801513671875 2 465.777608 929.540663 0.10481 4.8816E-05 -0.51456 -0.00023967 -0.40976 -0.00019086 465.7772041905816 72.647 0.50597 76.12 75.818 76.324 3.4732 56 38 2 0 0 0 0.72333 1 17092 17092 2.3027 0 1 147560 51671 8914 32297 32314 59471 59471 0.07307411740180214 VTGLYKKSL 9 Unmodified _VTGLYKKSL_ 0 0 0 L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|43|3|sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|43|3|sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|43|3|sense MSMS UPN46_class_I_Rep_3 1 504.8086853027344 2 504.808042 1007.60153 NaN NaN NaN NaN NaN NaN NaN 31.199 1 31.199 30.699 31.699 0 0 0 0 0.38478 1 5181 5181 4.3292 0 1 51672 8832 32298 32315 59472 59472 0.09803503999762597 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN46_class_I_Rep_3 1 434.7799377441406 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 46.238 1 46.238 45.738 46.738 0 0 0 0 0.39428 1 9465 9465 2.0598 0 1 51673 3270 32299 32316 59473 59473 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN46_class_I_Rep_3 1 434.7799987792969 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 47.897 1 47.897 47.397 48.397 0 0 0 0 0.39428 1 9937 9937 2.0598 0 1 51674 3270 32299 32316 59474 59474 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN46_class_I_Rep_3 1 434.77984619140625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 52.464 1 52.464 51.964 52.964 0 0 0 0 0.39428 1 11220 11220 2.0598 0 1 51675 3270 32299 32316 59475 59475 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN46_class_I_Rep_3 1 434.7797546386719 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 52.898 1 52.898 52.398 53.398 0 0 0 0 0.39428 1 11340 11340 2.0598 0 1 51676 3270 32299 32316 59476 59476 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN46_class_I_Rep_3 1 434.77972412109375 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 53.163 1 53.163 52.663 53.663 0 0 0 0 0.39428 1 11420 11420 2.0598 0 1 51677 3270 32299 32316 59477 59477 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN46_class_I_Rep_3 1 434.77996826171875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 53.307 1 53.307 52.807 53.807 0 0 0 0 0.39428 1 11461 11461 2.0598 0 1 51678 3270 32299 32316 59478 59478 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_2 3 434.77984619140625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 46.84 1 50.192 49.692 50.692 3.3515 0 0 0 0.39428 1 10002 10002 2.0598 0 1 51679 3270 32299 32316 59479 59479 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_2 3 434.7799377441406 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 62.012 1 65.272 64.772 65.772 3.2594 0 0 0 0.39428 1 14615 14615 2.0598 0 1 51680 3270 32299 32316 59480 59480 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_3 4 434.7797546386719 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 36.537 1 39.784 39.284 40.284 3.247 0 0 0 0.39428 1 6900 6900 2.0598 0 1 51681 3270 32299 32316 59481 59481 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_3 4 434.77978515625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 36.799 1 40.046 39.546 40.546 3.247 0 0 0 0.39428 1 6981 6981 2.0598 0 1 51682 3270 32299 32316 59482 59482 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_3 4 434.7798156738281 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 43.23 1 46.472 45.972 46.972 3.2419 0 0 0 0.39428 1 8950 8950 2.0598 0 1 51683 3270 32299 32316 59483 59483 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN47_class_I_Rep_3 4 434.77923583984375 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 59.685 1 62.85 62.35 63.35 3.1651 0 0 0 0.39428 1 13962 13962 2.0598 0 1 51684 3270 32299 32316 59484 59484 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS UPN48_class_I_Rep_1 5 434.77984619140625 2 434.778754 867.542954 -0.022084 -9.6017E-06 3.1266 0.0013594 3.1045 0.0013498 434.7799392238414 75.258 0.13377 78.758 78.731 78.865 3.4996 18 11 2 0 0 0 0.48643 1 17824 17824 2.0598 0 1 252140 51685 3270 32299 32316 59485 59485 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS UPN48_class_I_Rep_1 5 434.77984619140625 2 434.778754 867.542954 -0.022508 -9.786E-06 3.0415 0.0013224 3.019 0.0013126 434.7799497676046 75.568 0.095642 79.067 79.052 79.147 3.4996 11 7 2 0 0 0 0.48643 1 17913 17913 2.0598 0 1 693910 51686 3270 32299 32316 59486 59486 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_1 5 434.779541015625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 59.251 1 62.731 62.231 63.231 3.4801 0 0 0 0.39428 1 13002 13002 2.0598 0 1 51687 3270 32299 32316 59487 59487 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_1 5 434.7799072265625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 59.428 1 62.908 62.408 63.408 3.4801 0 0 0 0.39428 1 13057 13057 2.0598 0 1 51688 3270 32299 32316 59488 59488 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_1 5 434.78009033203125 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 59.85 1 63.33 62.83 63.83 3.4801 0 0 0 0.39428 1 13187 13187 2.0598 0 1 51689 3270 32299 32316 59489 59489 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_1 5 434.7799072265625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 61.809 1 65.277 64.777 65.777 3.4678 0 0 0 0.39428 1 13783 13783 2.0598 0 1 51690 3270 32299 32316 59490 59490 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_1 5 434.7801208496094 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 75.887 1 79.387 78.887 79.887 3.4996 0 0 0 0.39428 1 18006 18006 2.0598 0 1 51691 3270 32299 32316 59491 59491 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_2 6 434.77996826171875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 67.979 1 71.487 70.987 71.987 3.5083 0 0 0 0.39428 1 15648 15648 2.0598 0 1 51692 3270 32299 32316 59492 59492 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_3 7 434.7798156738281 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 55.474 1 59.029 58.529 59.529 3.5554 0 0 0 0.39428 1 11763 11763 2.0598 0 1 51693 3270 32299 32316 59493 59493 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_3 7 434.7799987792969 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 73.158 1 76.696 76.196 77.196 3.5373 0 0 0 0.39428 1 17103 17103 2.0598 0 1 51694 3270 32299 32316 59494 59494 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS UPN48_class_I_Rep_3 7 434.77996826171875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 75.211 1 78.777 78.277 79.277 3.5659 0 0 0 0.39428 1 17655 17655 2.0598 0 1 51695 3270 32299 32316 59495 59495 0.10388447425293634 VTGPVLAVI 9 Unmodified _VTGPVLAVI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MATCH UPN48_class_I_Rep_3 7 2 434.778754 867.542954 0.184 7.9998E-05 3.0685 0.0013341 3.2525 0.0014141 434.7800205446881 75.088 0.12228 78.654 78.598 78.72 3.5659 -0.05212 -3.6781E-06 NaN 2.0598 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 170780 51696 3270 32299 32316 0.10388447425293634 VTGRELGLL 9 Unmodified _VTGRELGLL_ 0 0 0 ENSG00000130518.17,IQCN,chr19,-,I1.1,18269592,18274402|60|51.68|1|intron ENSG00000130518.17,IQCN,chr19,-,I1.1,18269592,18274402|60|51.68|1|intron ENSG00000130518.17,IQCN,chr19,-,I1.1,18269592,18274402|60|51.68|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 479.2911682128906 2 479.290017 956.565481 -0.23315 -0.00011175 -0.04978 -2.3859E-05 -0.28293 -0.00013561 479.2900073655146 31.57 0.675 35.039 34.644 35.319 3.4691 105 56 2 0 0 0 0.49026 1 5422 5422 1.6526 0 1 141560 51697 2659 32300 32317 59496 59496 0.0854604682289164 VTHDTLLL 8 Unmodified _VTHDTLLL_ 0 0 0 REV__nc|ENSG00000182173|Q7Z6J9-2|TSEN54 REV__nc|ENSG00000182173|Q7Z6J9-2|TSEN54 MULTI-MSMS UPN47_class_I_Rep_2 3 456.2643737792969 2 456.263468 910.512382 -0.016371 -7.4696E-06 0.024642 1.1243E-05 0.0082705 3.7735E-06 456.26338821195407 56.868 0.97726 60.169 59.759 60.736 3.3009 141 78 3 0 0 0 0.82752 4 12958 12958;12965;13164;13179 5.7604 0 1 714300 + 51698 20749 32301 32318 59497;59498;59499;59500 59497 0.05354669040252702 VTHLPVGVTV 10 Unmodified _VTHLPVGVTV_ 0 0 0 nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG nc|ENSG00000072195|Q15772-1|SPEG nc|ENSG00000072195|Q15772-1|SPEG MULTI-MSMS UPN47_class_I_Rep_1 2 511.3056335449219 2 511.305667 1020.59678 0.25054 0.0001281 0.37743 0.00019298 0.62798 0.00032109 511.30578747461016 62.07 1.2253 65.438 65.113 66.338 3.3681 168 85 3 0 0 0 0.31342 2 14612 14612;14651 29.082 1.4528 1 305060 51699 1098 32302 32319 59501;59502 59501 0.08730619857010424 VTHPVFRI 8 Unmodified _VTHPVFRI_ 0 0 0 REV__L1M5_dup46341|chr16:15684670-15685156:-|1.112025080690361|0.0399178256418217|4.8|151.0|13|2|sense REV__L1M5_dup46341|chr16:15684670-15685156:-|1.112025080690361|0.0399178256418217|4.8|151.0|13|2|sense MSMS UPN48_class_I_Rep_3 7 484.78790283203125 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 56.962 1 60.504 60.004 61.004 3.5427 0 0 0 0.40625 1 12210 12210 2.3027 0 1 + 51700 24682 32303 32320 59503 59503 0.07525787750932977 VTHRKKKT 8 Unmodified _VTHRKKKT_ 0 0 0 L1MDa_dup1431|chr3:141542935-141543841:-|1.3615408584247195|0.0435657622614127|4.97|151.0|20|2|sense L1MDa_dup1431|chr3:141542935-141543841:-|1.3615408584247195|0.0435657622614127|4.97|151.0|20|2|sense L1MDa_dup1431|chr3:141542935-141543841:-|1.3615408584247195|0.0435657622614127|4.97|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 499.3155822753906 2 499.3169 996.619247 NaN NaN NaN NaN NaN NaN NaN 58.216 1 58.216 57.716 58.716 0 0 0 0 0.40746 1 12802 12802 0.69038 0 1 51701 12094 32304 32321 59504 59504 0.12080264045266631 VTHRLQALR 9 Unmodified _VTHRLQALR_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MSMS UPN47_class_I_Rep_3 4 547.332763671875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 68.463 1 71.661 71.161 72.161 3.1977 0 0 0 0.40038 1 16638 16638 0.6015 0 1 51702 1067 32305 32322 59505 59505 0.108990514482457 VTHRRRSGGRT 11 Unmodified _VTHRRRSGGRT_ 0 0 0 REV__Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|56|3|anti-sense REV__Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_1 2 641.8635864257812 2 641.8636 1281.71265 NaN NaN NaN NaN NaN NaN NaN 12.164 1 15.614 15.114 16.114 3.45 0 0 0 0.38417 1 34 34 0 0 1 + 51703 32675 32306 32323 59506 59506 0.0830595648039889 VTHVRKHR 8 Unmodified _VTHVRKHR_ 0 0 0 REV__L1ME2_dup11247|chr17:30119912-30120227:-|1.0497610298242854|0.0173086552026081|5.92|151.0|12|3|sense REV__L1ME2_dup11247|chr17:30119912-30120227:-|1.0497610298242854|0.0173086552026081|5.92|151.0|12|3|sense MSMS UPN48_class_I_Rep_1 5 516.7974243164062 2 516.812316 1031.61008 NaN NaN NaN NaN NaN NaN NaN 32.44 1 35.967 35.467 36.467 3.5266 0 0 0 0.40746 1 4934 4934 0.69038 0 1 + 51704 27824 32307 32324 59507 59507 0.09553915479591524 VTIATAILAG 10 Unmodified _VTIATAILAG_ 0 0 0 ENSG00000104044|ENST00000354638|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;nc|ENSG00000104044|Q04671-3|OCA2 ENSG00000104044|ENST00000354638|OCA2 ENSG00000104044|ENST00000354638|OCA2 MULTI-MSMS UPN46_class_I_Rep_3 1 465.2867736816406 2 465.286943 928.559333 0.1956 9.1012E-05 -0.32928 -0.00015321 -0.13367 -6.2195E-05 465.2867424682431 75.325 0.50159 75.325 75.117 75.619 0 88 47 3 0 0 0 0.31342 2 17537 17537;17590 29.082 0 1 1762500 51705 1674 32308 32325 59508;59509 59508 0.09219528591370363 VTIATKRIK 9 Unmodified _VTIATKRIK_ 0 0 0 L1PREC2_dup2766|chr6:24992341-24992860:+|1.0459548760857258|0.0232593387838682|5.49|147.0|7|2|sense L1PREC2_dup2766|chr6:24992341-24992860:+|1.0459548760857258|0.0232593387838682|5.49|147.0|7|2|sense L1PREC2_dup2766|chr6:24992341-24992860:+|1.0459548760857258|0.0232593387838682|5.49|147.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 515.3136596679688 2 515.342584 1028.67061 NaN NaN NaN NaN NaN NaN NaN 82.77 1 86.169 85.669 86.669 3.3984 0 0 0 0.4029 1 20632 20632 0 0 1 51706 15440 32309 32326 59510 59510 0.1574258801929318 VTIDKLIQ 8 Unmodified _VTIDKLIQ_ 0 0 0 REV__nc|ENSG00000108100|Q8ND76-3|CCNY REV__nc|ENSG00000108100|Q8ND76-3|CCNY MULTI-MSMS UPN46_class_I_Rep_3 1 465.28631591796875 2 465.286943 928.559333 0.1956 9.1012E-05 -0.32928 -0.00015321 -0.13367 -6.2195E-05 465.2867424682431 75.325 0.50159 75.325 75.117 75.619 0 88 47 3 0 0 0 0.82752 1 17464 17464 13.906 0 1 1762500 + 51707 18372 32310 32327 59511 59511 0.09219528591370363 VTIGHIALL 9 Unmodified _VTIGHIALL_ 0 0 0 nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B MSMS UPN48_class_I_Rep_1 5 468.7972412109375 2 468.797478 935.580402 NaN NaN NaN NaN NaN NaN NaN 65.271 1 68.725 68.225 69.225 3.4541 0 0 0 0.28335 1 14839 14839 11.64 0 1 51708 1243 32311 32328 59512 59512 0.11003538690886217 VTIGHIALL 9 Unmodified _VTIGHIALL_ 0 0 0 nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B MULTI-MSMS UPN48_class_I_Rep_3 7 468.7976379394531 2 468.797478 935.580402 0.23293 0.0001092 -0.51841 -0.00024303 -0.28548 -0.00013383 468.79722902448714 65.049 0.25765 68.557 68.435 68.693 3.5077 22 17 2 0 0 0 0.46434 1 14693 14693 4.3292 0 1 95134 51709 1243 32311 32328 59513 59513 0.11003538690886217 VTIGHIALL 9 Unmodified _VTIGHIALL_ 0 0 0 nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B nc|ENSG00000083642|Q9NTI5-2|PDS5B MULTI-MATCH UPN48_class_I_Rep_2 6 2 468.797478 935.580402 0.23344 0.00010944 0.28721 0.00013464 0.52065 0.00024408 468.79765975351876 65.152 0.11317 68.631 68.544 68.657 3.4792 0.037032 0.00043587 NaN 4.3292 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 106670 51710 1243 32311 32328 0.11003538690886217 VTIGRLIAA 9 Unmodified _VTIGRLIAA_ 0 0 0 REV__L1MB7_dup17325|chr14:49811003-49812799:-|4.515715246722223|0.1738691881874566|4.7|151.0|75|1|anti-sense REV__L1MB7_dup17325|chr14:49811003-49812799:-|4.515715246722223|0.1738691881874566|4.7|151.0|75|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 456.7555236816406 2 457.295102 912.575651 0.050506 2.3096E-05 -0.25125 -0.00011489 -0.20074 -9.1797E-05 457.29481634224805 65.363 0.47182 68.719 68.503 68.975 3.3557 35 25 2 0 0 0 0.11705 1 15628 15628 10.824 0 1 73561 + 51711 26168 32312 32329 59514 59514 0.11586654548113984 VTIHLLHH 8 Unmodified _VTIHLLHH_ 0 0 0 REV__ENSG00000182405|ENST00000397766|PGBD4 REV__ENSG00000182405|ENST00000397766|PGBD4 MSMS UPN48_class_I_Rep_1 5 485.2853088378906 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 36.276 1 39.786 39.286 40.286 3.5101 0 0 0 0.40738 1 6037 6037 0.79363 0 1 + 51712 20757 32313 32330 59515 59515 0.07004903608185487 VTIKFTPFQ 9 Unmodified _VTIKFTPFQ_ 0 0 0 nc|ENSG00000163075|Q4G0U5-3|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF;ENSG00000163075|ENST00000413369|CFAP221 nc|ENSG00000163075|Q4G0U5-3|CFAP221 nc|ENSG00000163075|Q4G0U5-3|CFAP221 MSMS UPN46_class_I_Rep_3 1 540.795654296875 2 540.808042 1079.60153 NaN NaN NaN NaN NaN NaN NaN 63.585 1 63.585 63.085 64.085 0 0 0 0 0.22485 1 14282 14282 14.838 2.3067 1 51713 3980 32314 32331 59516 59516 0.06491503999745873 VTIKLPAIPA 10 Unmodified _VTIKLPAIPA_ 0 0 0 REV__ENSG00000122376.12,SHLD2,chr10,+,I5.1,87158156,87170477|24|5.96|5|intron REV__ENSG00000122376.12,SHLD2,chr10,+,I5.1,87158156,87170477|24|5.96|5|intron MSMS UPN46_class_I_Rep_3 1 511.83306884765625 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 33.357 1 33.357 32.857 33.857 0 0 0 0 0.53105 1 5824 5824 0.45834 0 1 + 51714 18745 32315 32332 59517 59517 0.14360667413495776 VTIKLPAIPA 10 Unmodified _VTIKLPAIPA_ 0 0 0 REV__ENSG00000122376.12,SHLD2,chr10,+,I5.1,87158156,87170477|24|5.96|5|intron REV__ENSG00000122376.12,SHLD2,chr10,+,I5.1,87158156,87170477|24|5.96|5|intron MSMS UPN46_class_I_Rep_3 1 511.8326110839844 2 511.83406 1021.65357 NaN NaN NaN NaN NaN NaN NaN 33.54 1 33.54 33.04 34.04 0 0 0 0 0.53105 1 5879 5879 0.45834 0 1 + 51715 18745 32315 32332 59518 59518 0.14360667413495776 VTIKMFRC 8 Unmodified _VTIKMFRC_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS UPN47_class_I_Rep_2 3 499.27056884765625 2 499.269716 996.524878 0.30243 0.000151 1.1055 0.00055192 1.4079 0.00070291 499.2699866253029 57.068 0.15117 60.369 60.247 60.398 3.3009 17 12 2 0 0 0 0.82752 1 13113 13113 12.532 0 1 61125 + 51716 18578 32316 32333 59519 59519 0.02647665907272767 VTINFPAAPLA 11 Unmodified _VTINFPAAPLA_ 0 0 0 REV__ENSG00000092445|ENST00000263798|TYRO3 REV__ENSG00000092445|ENST00000263798|TYRO3 MSMS UPN47_class_I_Rep_3 4 557.3201293945312 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 98.942 1 102.38 101.88 102.88 3.4328 0 0 0 0.38417 1 24486 24486 1.4819 0.28856 1 + 51717 18035 32317 32334 59520 59520 0.07118889028470221 VTINLRAR 8 Unmodified _VTINLRAR_ 0 0 0 REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|32|2|sense REV__Harlequin-int_dup231|chr6:35001831-35003823:+|5.075157417109199|0.1980525587073738|4.68|151.0|32|2|sense MSMS UPN47_class_I_Rep_3 4 471.79583740234375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 59.516 1 62.681 62.181 63.181 3.1651 0 0 0 0.40625 1 13910 13910 2.3027 0 1 + 51718 23514 32318 32335 59521 59521 0.1039228863688777 VTISIYKR 8 Unmodified _VTISIYKR_ 0 0 0 REV__nc|ENSG00000124786|Q9H1N7-2|SLC35B3 REV__nc|ENSG00000124786|Q9H1N7-2|SLC35B3 MSMS UPN48_class_I_Rep_1 5 490.3009033203125 2 490.300384 978.586216 NaN NaN NaN NaN NaN NaN NaN 66.17 1 69.622 69.122 70.122 3.4516 0 0 0 0.40746 1 15111 15111 0.69038 0 1 + 51719 18819 32319 32336 59522 59522 0.0960663720256889 VTISLSIHL 9 Unmodified _VTISLSIHL_ 0 0 0 L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|51|1|anti-sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|51|1|anti-sense L1MA9_dup7479|chr7:152213065-152214398:+|1.6365776683300923|0.0418269153519326|5.29|151.0|51|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 492.30194091796875 2 491.800217 981.585882 0.22207 0.00010921 0.062808 3.0889E-05 0.28488 0.0001401 491.8001972909186 67.771 0.53825 71.222 70.957 71.495 3.4517 55 38 2 0 0 0 0.35081 1 15551 15551 10.824 0 1 391950 51720 10153 32320 32337 59523 59523 0.09435217482723601 VTITQKPN 8 Unmodified _VTITQKPN_ 0 0 0 L1MB3_dup908|chr1:153906525-153907637:+|3.8735153097750703|0.0196090769883223|7.63|151.0|31|3|sense L1MB3_dup908|chr1:153906525-153907637:+|3.8735153097750703|0.0196090769883223|7.63|151.0|31|3|sense L1MB3_dup908|chr1:153906525-153907637:+|3.8735153097750703|0.0196090769883223|7.63|151.0|31|3|sense MSMS UPN46_class_I_Rep_3 1 450.76092529296875 2 450.761092 899.507631 NaN NaN NaN NaN NaN NaN NaN 39.822 1 39.822 39.322 40.322 0 0 0 0 0.40746 1 7683 7683 0.69038 0 1 51721 10469 32321 32338 59524 59524 0.053857848974644185 VTITTREKK 9 Unmodified _VTITTREKK_ 0 0 0 ENST00000579937.5_1_17:27901722-27902151:-|nuORF;ENST00000473217.5_1_17:27901722-27902547:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1 ENST00000579937.5_1_17:27901722-27902151:-|nuORF ENST00000579937.5_1_17:27901722-27902151:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 538.3270874023438 2 538.327131 1074.63971 0.35598 0.00019163 -0.53439 -0.00028768 -0.17841 -9.6043E-05 538.3268056579604 97.407 0.11583 97.407 97.36 97.476 0 16 11 2 0 0 0 0.50088 1 23697 23697 0.52476 0 1 237940 51722 1856 32322 32339 59525 59525 0.10537389914406958 VTITTREKK 9 Unmodified _VTITTREKK_ 0 0 0 ENST00000579937.5_1_17:27901722-27902151:-|nuORF;ENST00000473217.5_1_17:27901722-27902547:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1 ENST00000579937.5_1_17:27901722-27902151:-|nuORF ENST00000579937.5_1_17:27901722-27902151:-|nuORF MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 538.327131 1074.63971 0.35598 0.00019163 -0.53439 -0.00028768 -0.17841 -9.6043E-05 538.3268056579604 97.407 0.11583 97.407 97.36 97.476 0 -0.10817 -0.00018855 NaN 0.52476 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 237940 51723 1856 32322 32339 0.10537389914406958 VTITTREKK 9 Unmodified _VTITTREKK_ 0 0 0 ENST00000579937.5_1_17:27901722-27902151:-|nuORF;ENST00000473217.5_1_17:27901722-27902547:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1 ENST00000579937.5_1_17:27901722-27902151:-|nuORF ENST00000579937.5_1_17:27901722-27902151:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 538.327131 1074.63971 0.50968 0.00027437 -0.21731 -0.00011698 0.29237 0.00015739 538.3270378823302 94.016 0.30817 97.752 97.706 98.014 3.736 0.23677 0.00015284 NaN 0.52476 44 39 2 NaN NaN NaN NaN 0 NaN NaN 0 67528 51724 1856 32322 32339 0.10537389914406958 VTITTREKK 9 Unmodified _VTITTREKK_ 0 0 0 ENST00000579937.5_1_17:27901722-27902151:-|nuORF;ENST00000473217.5_1_17:27901722-27902547:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1 ENST00000579937.5_1_17:27901722-27902151:-|nuORF ENST00000579937.5_1_17:27901722-27902151:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 538.327131 1074.63971 0.58136 0.00031296 -0.31962 -0.00017206 0.26174 0.0001409 538.3268259023703 94.182 0.034851 97.654 97.643 97.678 3.472 0.1387 4.2681E-05 NaN 0.52476 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 79580 51725 1856 32322 32339 0.10537389914406958 VTITTREKK 9 Unmodified _VTITTREKK_ 0 0 0 ENST00000579937.5_1_17:27901722-27902151:-|nuORF;ENST00000473217.5_1_17:27901722-27902547:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1 ENST00000579937.5_1_17:27901722-27902151:-|nuORF ENST00000579937.5_1_17:27901722-27902151:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 538.327131 1074.63971 0.46317 0.00024933 -0.091384 -4.9194E-05 0.37178 0.00020014 538.3270470599291 93.626 0.036583 97.396 97.383 97.42 3.77 -0.11959 0.00028841 NaN 0.52476 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 64928 51726 1856 32322 32339 0.10537389914406958 VTITTREKK 9 Unmodified _VTITTREKK_ 0 0 0 ENST00000579937.5_1_17:27901722-27902151:-|nuORF;ENST00000473217.5_1_17:27901722-27902547:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1 ENST00000579937.5_1_17:27901722-27902151:-|nuORF ENST00000579937.5_1_17:27901722-27902151:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 538.327131 1074.63971 0.57694 0.00031058 -0.49464 -0.00026628 0.082302 4.4305E-05 538.3267740198594 93.476 0.22137 97.368 97.312 97.534 3.8914 -0.14771 -0.00014575 NaN 0.52476 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 107840 51727 1856 32322 32339 0.10537389914406958 VTIVQNNLII 10 Unmodified _VTIVQNNLII_ 0 0 0 L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|19|2|sense L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|19|2|sense L1MA2_dup5522|chr11:66139197-66139946:-|1.7252193446955597|0.0226717758918057|6.25|151.0|19|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 563.8453369140625 2 563.845156 1125.67576 0.4722 0.00026625 -0.20077 -0.00011321 0.27142 0.00015304 563.8449843090788 65.768 0.59534 69.275 68.857 69.452 3.5077 81 38 3 0 0 0 0.55448 1 14932 14932 4.897 0 1 204290 51728 9400 32323 32340 59526 59526 0.11794847091277916 VTIYNGKL 8 Unmodified _VTIYNGKL_ 0 0 0 Tigger1_dup4707|chr6:20421888-20423036:-|3.500784377668927|0.0664612736976561|5.72|151.0|29|3|sense Tigger1_dup4707|chr6:20421888-20423036:-|3.500784377668927|0.0664612736976561|5.72|151.0|29|3|sense Tigger1_dup4707|chr6:20421888-20423036:-|3.500784377668927|0.0664612736976561|5.72|151.0|29|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 453.7850036621094 2 454.26601 906.517468 -0.29522 -0.00013411 0.55826 0.0002536 0.26304 0.00011949 454.2661072160531 58.903 0.17408 62.069 61.969 62.143 3.1658 15 10 2 0 0 0 0.72333 1 13702 13702 3.9444 0 1 68149 51729 33103 32324 32341 59527 59527 0.06046972902856851 VTKARLTTAAG 11 Unmodified _VTKARLTTAAG_ 0 0 0 REV__LTR41_dup48|chr1:45647459-45647941:+|2.542143222325808|0.3003983162180261|3.08|151.0|24|2|anti-sense REV__LTR41_dup48|chr1:45647459-45647941:+|2.542143222325808|0.3003983162180261|3.08|151.0|24|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 544.8248901367188 2 544.824755 1087.63496 0.37993 0.00020699 -0.030534 -1.6635E-05 0.34939 0.00019036 544.8247486022075 92.884 0.1333 92.884 92.791 92.924 0 15 11 2 0 0 0 0.68583 1 22476 22476 0 0 1 87417 + 51730 30923 32325 32342 59528 59528 0.09464505771620679 VTKDIKPIN 9 Unmodified _VTKDIKPIN_ 0 0 0 L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|7|1|sense L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|7|1|sense L1MEc_dup6857|chr6:37895454-37896025:-|1.098016821310258|0.0061649260087356|7.48|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 514.2991333007812 2 514.310949 1026.60735 NaN NaN NaN NaN NaN NaN NaN 44.882 1 48.644 48.144 49.144 3.7617 0 0 0 0.39036 1 8605 8605 2.9952 0 1 51731 13131 32326 32343 59529 59529 0.09510602511409161 VTKDKRKI 8 Unmodified _VTKDKRKI_ 0 0 0 ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|2|1|sense ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|2|1|sense ERVL-E-int_dup2402|chr4:112330565-112332601:-|1.1075596014254407|0.022705828638112|5.61|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 494.3193054199219 2 494.319109 986.623664 NaN NaN NaN NaN NaN NaN NaN 64.991 1 68.445 67.945 68.945 3.4541 0 0 0 0.40643 1 14753 14753 2.0598 0 1 51732 7745 32327 32344 59530 59530 0.12981728468184883 VTKENLRI 8 Unmodified _VTKENLRI_ 0 0 0 HAL1_dup873|chr1:113749242-113749953:-|1.530473980787986|0.0975705891665481|3.97|151.0|8|1|sense HAL1_dup873|chr1:113749242-113749953:-|1.530473980787986|0.0975705891665481|3.97|151.0|8|1|sense HAL1_dup873|chr1:113749242-113749953:-|1.530473980787986|0.0975705891665481|3.97|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 486.795166015625 2 486.795466 971.57638 NaN NaN NaN NaN NaN NaN NaN 27.734 1 27.734 27.234 28.234 0 0 0 0 0.40331 1 4157 4157 6.2058 0 1 51733 7918 32328 32345 59531 59531 0.0894544919716509 VTKFAGRG 8 Unmodified _VTKFAGRG_ 0 0 0 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 MSMS UPN48_class_I_Rep_1 5 418.2569885253906 2 418.24287 834.471186 NaN NaN NaN NaN NaN NaN NaN 98.882 1 102.49 101.99 102.99 3.6065 0 0 0 0.4044 1 23866 23866 4.756 0 1 + 51734 21049 32329 32346 59532 59532 0.047329527914257596 VTKFLSLF 8 Unmodified _VTKFLSLF_ 0 0 0 REV__L1MB4_dup2822|chr6:4828422-4830082:-|2.1189614248708137|0.0246918004289951|6.42|151.0|106|3|anti-sense REV__L1MB4_dup2822|chr6:4828422-4830082:-|2.1189614248708137|0.0246918004289951|6.42|151.0|106|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 477.7864685058594 2 477.786579 953.558604 0.16391 7.8314E-05 -0.02287 -1.0927E-05 0.14104 6.7387E-05 477.78641955069946 68.183 0.80904 71.635 71.216 72.025 3.4517 166 68 3 0 0 0 0.82752 1 15676 15676 34.402 3.7652 1 561570 + 51735 25956 32330 32347 59533 59533 0.07996733942343326 VTKGFPQVL 9 Unmodified _VTKGFPQVL_ 0 0 0 REV__L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|15|1|sense REV__L1MA7_dup305|chr1:150761761-150763590:+|2.382748156588117|0.0573950238482359|5.38|151.0|15|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.79498291015625 2 494.794935 987.575317 -0.26552 -0.00013138 0.27528 0.00013621 0.0097631 4.8307E-06 494.7950226733374 36.206 0.97769 39.875 39.534 40.512 3.6692 165 73 3 0 0 0 0.44742 1 6651 6651 5.2969 0.54088 1 334060 + 51736 25505 32331 32348 59534 59534 0.08103234828263339 VTKIGLALT 9 Unmodified _VTKIGLALT_ 0 0 0 REV__L1M4b_dup3148|chr11:116949631-116950307:-|1.2482383979821918|0.0314212251258845|5.31|151.0|20|3|sense REV__L1M4b_dup3148|chr11:116949631-116950307:-|1.2482383979821918|0.0314212251258845|5.31|151.0|20|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.2959289550781 2 458.29731 914.580068 -0.14833 -6.798E-05 -0.30124 -0.00013806 -0.44957 -0.00020604 458.29596937065753 25.632 0.46509 25.632 25.445 25.91 0 78 43 3 0 0 0 0.50582 1 3544 3544 0 0 1 87285 + 51737 24541 32332 32349 59535 59535 0.11936118971016185 VTKIMFLKFK 10 Unmodified _VTKIMFLKFK_ 0 0 0 REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|15|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 627.3837890625 2 627.88577 1253.75699 0.63446 0.00039837 -2.2994 -0.0014438 -1.6649 -0.0010454 627.8847081020251 103.82 0.12592 107.35 107.33 107.45 3.5289 29 19 2 0 0 0 0.84575 1 25233 25233 5.2969 1.1074 1 37873000 + 51738 27362 32333 32350 59536 59536 0.1402583152967054 VTKINLKWIT 10 Unmodified _VTKINLKWIT_ 0 0 0 L1MC1_dup7641|chr9:124635620-124636827:-|1.0496848912957495|0.0186059739302112|5.82|149.0|3|1|sense L1MC1_dup7641|chr9:124635620-124636827:-|1.0496848912957495|0.0186059739302112|5.82|149.0|3|1|sense L1MC1_dup7641|chr9:124635620-124636827:-|1.0496848912957495|0.0186059739302112|5.82|149.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 608.8784790039062 2 608.376623 1214.73869 0.53184 0.00032356 -0.010692 -6.5046E-06 0.52115 0.00031705 608.3766963479372 107.8 0.14508 111.48 111.41 111.56 3.6724 15 9 3 0 0 0 0.56118 1 26431 26431 2.9952 0 1 3856900 51739 11193 32334 32351 59537 59537 0.13991412879317977 VTKIRLTA 8 Unmodified _VTKIRLTA_ 0 0 0 L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|30|3|sense L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|30|3|sense L1MEc_dup14322|chr13:50098106-50099012:+|5.97411822874529|0.0808590463427374|6.21|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 451.29461669921875 2 451.295102 900.575651 NaN NaN NaN NaN NaN NaN NaN 63.21 1 66.683 66.183 67.183 3.4738 0 0 0 0.40746 1 14193 14193 0.69038 0 1 51740 13023 32335 32352 59538 59538 0.12138654548107297 VTKKIAKSIIA 11 Unmodified _VTKKIAKSIIA_ 0 0 0 REV__L1M5_dup51309|chr19:41566417-41567051:-|1.1602996589899308|0.3776043737366403|1.62|151.0|8|2|sense REV__L1M5_dup51309|chr19:41566417-41567051:-|1.1602996589899308|0.3776043737366403|1.62|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 586.3925170898438 2 586.392273 1170.76999 0.50174 0.00029422 0.38754 0.00022725 0.88928 0.00052146 586.3923588759809 108.27 0.72962 111.9 111.4 112.13 3.6355 153 61 3 0 0 0 0.68583 1 26514 26514 0 0 1 5877200 + 51741 24695 32336 32353 59539 59539 0.19143985913433426 VTKKKKKKK 9 Unmodified _VTKKKKKKK_ 0 0 0 AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense;AluJo_dup46523|chr11:33268313-33268616:+|2.274186437487737|0.0523862250563642|5.44|151.0|4|1|sense;AluSg_dup5313|chr2:196140578-196140862:-|1.5105075870854017|0.0501846147414196|4.91|151.0|11|3|sense AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense AluSz_dup2923|chr1:45643659-45643965:-|1.362170753636477|0.2754054809460712|2.31|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 558.4017944335938 2 558.402976 1114.7914 NaN NaN NaN NaN NaN NaN NaN 76.47 1 80.053 79.553 80.553 3.5831 0 0 0 0.4029 1 18012 18012 0 0 1 51742 345 32337 32354 59540 59540 0.23859415732772504 VTKKKKKQK 9 Unmodified _VTKKKKKQK_ 0 0 0 REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF MSMS UPN48_class_I_Rep_3 7 558.385009765625 2 558.384783 1114.75501 NaN NaN NaN NaN NaN NaN NaN 111.33 1 114.99 114.49 115.49 3.6654 0 0 0 0.4007 1 26416 26416 0.52476 0 1 + 51743 21854 32338 32355 59541 59541 0.20222538836083004 VTKKKKKRKK 10 Unmodified _VTKKKKKRKK_ 0 0 0 AluJr_dup67974|chr16:30287372-30287682:+|1.0063779510724096|0.1320924750446944|2.93|149.0|3|1|sense;AluJr_dup67847|chr16:29445603-29445913:+|1.2671898799114412|0.1003706804292108|3.66|150.0|3|1|sense AluJr_dup67974|chr16:30287372-30287682:+|1.0063779510724096|0.1320924750446944|2.93|149.0|3|1|sense AluJr_dup67974|chr16:30287372-30287682:+|1.0063779510724096|0.1320924750446944|2.93|149.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 636.4522094726562 2 636.453531 1270.89251 NaN NaN NaN NaN NaN NaN NaN 86.566 1 86.566 86.066 87.066 0 0 0 0 0.53105 1 20696 20696 0 0 1 51744 173 32339 32356 59542 59542 0.26789867435468295 VTKKRRRKKKK 11 Unmodified _VTKKRRRKKKK_ 0 0 0 REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.7712707519531 3 486.007199 1454.99977 NaN NaN NaN NaN NaN NaN NaN 37.059 1 40.566 40.066 41.066 3.507 0 0 0 0.38417 1 6258 6258 0.094841 0 1 + 51745 22279 32340 32357 59543 59543 0.2904683736969673 VTKNVSKPR 9 Unmodified _VTKNVSKPR_ 0 0 0 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 MULTI-MSMS UPN46_class_I_Rep_3 1 514.8137817382812 2 514.81419 1027.61383 -0.28267 -0.00014552 0.35783 0.00018422 0.075158 3.8692E-05 514.8142742662112 12.81 0.2623 12.81 12.749 13.011 0 53 22 3 0 0 0 0.1293 1 208 208 28.234 9.8605 1 155070 51746 2650 32341 32358 59544 59544 0.1011254046279646 VTKPKVDL 8 Unmodified _VTKPKVDL_ 0 0 0 REV__L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|26|1|sense REV__L1M3_dup77|chr1:41600813-41603054:-|1.1200830802956758|0.0097670732789758|6.84|151.0|26|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 450.2628173828125 2 450.28166 898.548768 -0.085465 -3.8483E-05 -0.45214 -0.00020359 -0.5376 -0.00024207 450.2813121518453 53.474 0.52043 56.801 56.631 57.152 3.3266 42 36 2 0 0 0 0.72333 1 12043 12043 2.3027 0 1 49407 + 51747 24308 32342 32359 59545 59545 0.09543545936935516 VTKPVGGNY 9 Unmodified _VTKPVGGNY_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS UPN46_class_I_Rep_3 1 467.7529296875 2 467.753267 933.491981 -0.072052 -3.3703E-05 -0.3022 -0.00014135 -0.37425 -0.00017506 467.7530423860734 27.99 0.96096 27.99 27.635 28.596 0 131 75 2 0 0 0 0.10225 1 4235 4235 33.445 10.709 1 208530 51748 5036 32343 32360 59546 59546 0.022574983804247495 VTKRSPLL 8 Unmodified _VTKRSPLL_ 0 0 0 REV__ENST00000608317.1_1_7:154795649-154795937:+|nuORF REV__ENST00000608317.1_1_7:154795649-154795937:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 457.7812805175781 2 457.295102 912.575651 0.27521 0.00012585 -0.18623 -8.5161E-05 0.088982 4.0691E-05 457.2949523842663 57.297 0.80341 60.811 60.451 61.254 3.5142 151 66 3 0 0 0 0.82752 1 12309 12309 15.847 0 1 655170 + 51749 23237 32344 32361 59547 59547 0.11586654548136721 VTKSVPIVL 9 Unmodified _VTKSVPIVL_ 0 0 0 REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|88|3|sense REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|88|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.3130798339844 2 478.312961 954.611368 0.26675 0.00012759 -0.28716 -0.00013735 -0.020414 -9.7644E-06 478.3127612938109 61.683 0.60725 65.15 64.887 65.494 3.4678 72 55 2 0 0 0 0.38714 2 13753 13753;13794 8.7454 0 1 155110 + 51750 23476 32345 32362 59548;59549 59548 0.13224692005132965 VTKSVPIVL 9 Unmodified _VTKSVPIVL_ 0 0 0 REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|88|3|sense REV__HAL1M8_dup510|chr4:48405364-48407712:-|1.8380200558017712|0.0489382378131174|5.23|151.0|88|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.3128662109375 2 478.312961 954.611368 0.22131 0.00010586 -0.31315 -0.00014978 -0.091835 -4.3926E-05 478.31263559911406 61.421 0.39511 64.934 64.851 65.246 3.5129 43 32 2 0 0 0 0.33908 1 13578 13578 11.495 0 1 104270 + 51751 23476 32345 32362 59550 59550 0.13224692005132965 VTKTARPAL 9 Unmodified _VTKTARPAL_ 0 0 0 REV__LTR17_dup271|chr5:18733176-18733974:-|1.0562698013741136|0.0374369490083883|4.82|150.0|49|3|anti-sense REV__LTR17_dup271|chr5:18733176-18733974:-|1.0562698013741136|0.0374369490083883|4.82|150.0|49|3|anti-sense MSMS UPN48_class_I_Rep_3 7 478.79815673828125 2 478.798009 955.581465 NaN NaN NaN NaN NaN NaN NaN 61.785 1 65.296 64.796 65.796 3.5104 0 0 0 0.3377 1 13682 13682 8.7454 0.58988 1 + 51752 30863 32346 32363 59551 59551 0.10189753059785289 VTKTHVSY 8 Unmodified _VTKTHVSY_ 0 0 0 REV__HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|21|2|sense REV__HAL1M8_dup252|chr2:134926190-134926892:-|1.1357250017597942|0.0199785870893043|5.83|150.0|21|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 467.7529602050781 2 467.753267 933.491981 -0.072052 -3.3703E-05 -0.3022 -0.00014135 -0.37425 -0.00017506 467.7530423860734 27.99 0.96096 27.99 27.635 28.596 0 131 75 2 0 0 0 0.82752 2 4196 4196;4286 22.736 1.1993 1 208530 + 51753 23471 32347 32364 59552;59553 59552 0.022574983804247495 VTKTVTRVTG 10 Unmodified _VTKTVTRVTG_ 0 0 0 REV__nc|ENSG00000187109|P55209-3|NAP1L1 REV__nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS UPN46_class_I_Rep_3 1 531.3192138671875 2 531.319306 1060.62406 0.33683 0.00017897 -0.086364 -4.5887E-05 0.25047 0.00013308 531.3191809650745 89.679 0.52381 89.679 89.371 89.895 0 112 47 3 0 0 0 0.56543 1 21516 21516 0 0 1 827680 + 51754 20920 32348 32365 59554 59554 0.09617103397340543 VTKVWRNR 8 Unmodified _VTKVWRNR_ 0 0 0 REV__ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron REV__ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron MSMS UPN47_class_I_Rep_1 2 529.8136596679688 2 529.814525 1057.6145 NaN NaN NaN NaN NaN NaN NaN 32.907 1 36.62 36.12 37.12 3.7131 0 0 0 0.40625 1 5725 5725 2.3027 0 1 + 51755 21119 32349 32366 59555 59555 0.08799379902484361 VTKVWRNR 8 Unmodified _VTKVWRNR_ 0 0 0 REV__ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron REV__ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron MSMS UPN47_class_I_Rep_2 3 529.8137817382812 2 529.814525 1057.6145 NaN NaN NaN NaN NaN NaN NaN 33.099 1 36.553 36.053 37.053 3.4547 0 0 0 0.40625 1 5820 5820 2.3027 0 1 + 51756 21119 32349 32366 59556 59556 0.08799379902484361 VTKWLRQV 8 Unmodified _VTKWLRQV_ 0 0 0 REV__L1PA13_dup423|chr1:202744587-202745345:+|1.231125438536271|0.0327466498264302|5.23|151.0|23|3|sense REV__L1PA13_dup423|chr1:202744587-202745345:+|1.231125438536271|0.0327466498264302|5.23|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 515.3141479492188 2 515.313826 1028.6131 NaN NaN NaN NaN NaN NaN NaN 83.467 1 86.817 86.317 87.317 3.35 0 0 0 0.39996 1 20934 20934 7.9102 0 1 + 51757 29100 32350 32367 59557 59557 0.09993745813744681 VTLAELLVL 9 Unmodified _VTLAELLVL_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS UPN48_class_I_Rep_3 7 485.81268310546875 2 485.812793 969.611034 0.23213 0.00011277 0.20966 0.00010186 0.44179 0.00021463 485.81282368124965 100.83 0.06382 104.65 104.59 104.66 3.8153 11 8 2 0 0 0 0.18929 1 23858 23858 21.747 0 1 70922 51758 1284 32351 32368 59558 59558 0.12501272285282994 VTLEGLLCL 9 Unmodified _VTLEGLLCL_ 0 0 0 REV__L1MCa_dup3339|chr7:131357912-131359728:-|1.0286431950190111|0.0146707862605215|6.13|150.0|138|3|anti-sense REV__L1MCa_dup3339|chr7:131357912-131359728:-|1.0286431950190111|0.0146707862605215|6.13|150.0|138|3|anti-sense MSMS UPN47_class_I_Rep_2 3 480.77716064453125 2 480.775354 959.536154 NaN NaN NaN NaN NaN NaN NaN 35.337 1 38.762 38.262 39.262 3.4253 0 0 0 0.19137 1 6502 6502 16.942 0 1 + 51759 27200 32352 32369 59559 59559 0.05476766482399853 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 527.3278198242188 2 527.330008 1052.64546 0.33325 0.00017573 -2.0342 -0.0010727 -1.701 -0.00089698 527.3289453725965 107.99 0.31145 107.99 107.93 108.24 0 38 22 2 0 0 0 0.40227 1 26382 26382 19.257 3.4098 1 37528000 + 51760 21951 32353 32370 59560 59560 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 527.3298950195312 2 527.330008 1052.64546 0.44894 0.00023674 0.02222 1.1717E-05 0.47116 0.00024846 527.3299225190143 107.83 0.16558 111.5 111.43 111.59 3.6724 30 10 5 0 0 0 0.40227 1 26430 26430 19.257 3.4098 1 27107000 + 51761 21951 32353 32370 59561 59561 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 527.3296508789062 2 527.330008 1052.64546 0.30374 0.00016017 0.23171 0.00012219 0.53545 0.00028236 527.3300337447924 107.84 0.26749 111.47 111.38 111.64 3.6313 64 20 5 0 0 0 0.47413 2 26004 26004;26060 13.906 0.6908 1 69082000 + 51762 21951 32353 32370 59562;59563 59562 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 527.3425903320312 2 527.330008 1052.64546 0.30297 0.00015977 0.36713 0.0001936 0.6701 0.00035336 527.3299825022516 108.09 0.26114 111.72 111.63 111.89 3.6313 33 22 2 0 0 0 0.84575 1 26169 26169 10.074 0.6908 1 1884300 + 51763 21951 32353 32370 59564 59564 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 527.3302612304688 2 527.330008 1052.64546 0.40581 0.000214 0.035969 1.8968E-05 0.44178 0.00023296 527.329956854037 107.81 0.14118 111.48 111.41 111.56 3.6783 39 12 4 0 0 0 0.52083 1 25501 25501 9.3831 0 1 53301000 + 51764 21951 32353 32370 59565 59565 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 527.3302001953125 2 527.330008 1052.64546 0.46341 0.00024437 0.0083489 4.4026E-06 0.47176 0.00024877 527.3299212438441 107.81 0.14664 111.5 111.44 111.58 3.6813 38 12 4 0 0 0 0.52083 1 25455 25455 9.3831 0 1 66505000 + 51765 21951 32353 32370 59566 59566 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 527.330008 1052.64546 0.44894 0.00023674 0.02222 1.1717E-05 0.47116 0.00024846 527.3299225190143 107.83 0.16558 111.5 111.43 111.59 3.6724 0.0514 -6.6116E-05 NaN 19.257 30 10 5 NaN NaN NaN NaN 0 NaN NaN 0 27107000 + 51766 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 527.330008 1052.64546 0.44825 0.00023638 -0.18799 -9.9131E-05 0.26026 0.00013725 527.3296713278355 107.97 0.054382 111.61 111.57 111.63 3.6355 -0.11357 -0.00063338 NaN 10.074 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 541990 + 51767 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 527.330008 1052.64546 0.42456 0.00022388 0.12547 6.6164E-05 0.55003 0.00029005 527.3300057757464 107.84 0.11642 111.38 111.32 111.44 3.5382 -0.073101 4.2777E-05 NaN 19.257 36 11 4 NaN NaN NaN NaN 0 NaN NaN 0 39501000 + 51768 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 527.330008 1052.64546 0.30374 0.00016017 0.23171 0.00012219 0.53545 0.00028236 527.3300337447924 107.84 0.26749 111.47 111.38 111.64 3.6313 0.017423 0.00015483 NaN 19.257 64 20 5 NaN NaN NaN NaN 0 NaN NaN 0 69082000 + 51769 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 527.330008 1052.64546 0.40581 0.000214 0.035969 1.8968E-05 0.44178 0.00023296 527.329956854037 107.81 0.14118 111.48 111.41 111.56 3.6783 0.033083 -5.1615E-05 NaN 19.257 39 12 4 NaN NaN NaN NaN 0 NaN NaN 0 53301000 + 51770 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 527.330008 1052.64546 0.4052 0.00021368 0.4764 0.00025122 0.8816 0.00046489 527.3303585766457 108.15 0.14861 111.82 111.72 111.87 3.6746 0.10067 6.7323E-05 NaN 10.074 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1167700 + 51771 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 527.330008 1052.64546 0.46341 0.00024437 0.0083489 4.4026E-06 0.47176 0.00024877 527.3299212438441 107.81 0.14664 111.5 111.44 111.58 3.6813 0.045361 -8.0745E-05 NaN 19.257 38 12 4 NaN NaN NaN NaN 0 NaN NaN 0 66505000 + 51772 21951 32353 32370 0.1212453321677458 VTLGPALRRA 10 Unmodified _VTLGPALRRA_ 0 0 0 REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 527.330008 1052.64546 0.46155 0.00024339 1.1033 0.00058182 1.5649 0.00082521 527.3307381773944 108.05 0.080879 111.73 111.67 111.75 3.6813 0.0076402 0.00072853 NaN 10.074 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 582840 + 51773 21951 32353 32370 0.1212453321677458 VTLGRRQT 8 Unmodified _VTLGRRQT_ 0 0 0 REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 465.7776794433594 2 465.777608 929.540663 0.19847 9.2441E-05 -0.29904 -0.00013928 -0.10057 -4.6843E-05 465.77743684841306 76.023 0.63739 76.023 75.588 76.226 0 91 65 2 0 0 0 0.82752 1 17731 17731 2.5775 0 1 134420 + 51774 22885 32354 32371 59567 59567 0.07307411740168845 VTLGRRQT 8 Unmodified _VTLGRRQT_ 0 0 0 REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 465.7773742675781 2 465.777608 929.540663 -0.062841 -2.927E-05 -0.14602 -6.8011E-05 -0.20886 -9.7281E-05 465.7774522919767 73.059 1.1082 76.286 75.416 76.524 3.2271 139 94 2 0 0 0 0.82752 1 17961 17961 2.0598 0 1 188210 + 51775 22885 32354 32371 59568 59568 0.07307411740168845 VTLGRRQT 8 Unmodified _VTLGRRQT_ 0 0 0 REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 465.7771301269531 2 465.777608 929.540663 0.10481 4.8816E-05 -0.51456 -0.00023967 -0.40976 -0.00019086 465.7772041905816 72.647 0.50597 76.12 75.818 76.324 3.4732 56 38 2 0 0 0 0.82752 1 16994 16994 2.0598 0 1 147560 + 51776 22885 32354 32371 59569 59569 0.07307411740168845 VTLGRRQTT 9 Unmodified _VTLGRRQTT_ 0 0 0 REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF MSMS UPN48_class_I_Rep_3 7 516.3019409179688 2 516.301447 1030.58834 NaN NaN NaN NaN NaN NaN NaN 68.531 1 72.04 71.54 72.54 3.5094 0 0 0 0.39428 1 15719 15719 2.0598 0 1 + 51777 22885 32355 32372 59570 59570 0.07427065940350985 VTLGSLSIVA 10 Unmodified _VTLGSLSIVA_ 0 0 0 L1MEc_dup1016|chr1:153843738-153844564:+|1.5126077149562502|0.0085395768577337|7.47|151.0|43|1|anti-sense L1MEc_dup1016|chr1:153843738-153844564:+|1.5126077149562502|0.0085395768577337|7.47|151.0|43|1|anti-sense L1MEc_dup1016|chr1:153843738-153844564:+|1.5126077149562502|0.0085395768577337|7.47|151.0|43|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.2922668457031 2 480.292225 958.569897 0.23416 0.00011247 -0.31994 -0.00015367 -0.085781 -4.12E-05 480.29199239320513 59.605 0.76376 62.878 62.581 63.345 3.2731 82 47 2 0 0 0 0.48573 1 14024 14024 13.042 0 1 317240 51778 12991 32356 32373 59571 59571 0.08895511245816579 VTLGVKTN 8 Unmodified _VTLGVKTN_ 0 0 0 L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|7|2|sense L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|7|2|sense L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 416.2491455078125 2 416.25036 830.486168 NaN NaN NaN NaN NaN NaN NaN 111.66 1 115.18 114.68 115.68 3.5226 0 0 0 0.40746 1 27186 27186 0.69038 0 1 51779 12891 32357 32374 59572 59572 0.06414399868742748 VTLGVKTN 8 Unmodified _VTLGVKTN_ 0 0 0 L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|7|2|sense L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|7|2|sense L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 416.2488708496094 2 416.25036 830.486168 NaN NaN NaN NaN NaN NaN NaN 111.04 1 114.57 114.07 115.07 3.529 0 0 0 0.40746 1 27243 27243 0.69038 0 1 51780 12891 32357 32374 59573 59573 0.06414399868742748 VTLHFRLP 8 Unmodified _VTLHFRLP_ 0 0 0 ENST00000466883.5_1_7:65439694-65439883:-|nuORF ENST00000466883.5_1_7:65439694-65439883:-|nuORF ENST00000466883.5_1_7:65439694-65439883:-|nuORF MSMS UPN48_class_I_Rep_2 6 491.79632568359375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 62.551 1 66.025 65.525 66.525 3.4738 0 0 0 0.40625 1 13989 13989 2.3027 0 1 51781 6905 32358 32375 59574 59574 0.08446074267999393 VTLHILGW 8 Unmodified _VTLHILGW_ 0 0 0 L1MB4_dup7385|chr16:47105212-47106484:+|1.0940565813838952|0.012973547154818|6.4|150.0|8|1|sense L1MB4_dup7385|chr16:47105212-47106484:+|1.0940565813838952|0.012973547154818|6.4|150.0|8|1|sense L1MB4_dup7385|chr16:47105212-47106484:+|1.0940565813838952|0.012973547154818|6.4|150.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 469.7786865234375 2 469.776545 937.538538 NaN NaN NaN NaN NaN NaN NaN 84.056 1 87.622 87.122 88.122 3.5655 0 0 0 0.40604 1 21029 21029 2.5775 0 1 51782 10570 32359 32376 59575 59575 0.06726983002386078 VTLHRGQR 8 Unmodified _VTLHRGQR_ 0 0 0 L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|12|2|sense L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|12|2|sense L1MEf_dup7318|chr10:21578719-21579562:-|1.418010625626288|0.0106291483626276|7.06|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 483.7838439941406 2 483.783225 965.551896 NaN NaN NaN NaN NaN NaN NaN 65.511 1 69.019 68.519 69.519 3.5077 0 0 0 0.40746 1 14810 14810 0.69038 0 1 51783 13314 32360 32377 59576 59576 0.06774233834323695 VTLIENKEL 9 Unmodified _VTLIENKEL_ 0 0 0 nc|ENSG00000138780|Q8NEC7-3|GSTCD;ENSG00000138780|ENST00000515279|GSTCD nc|ENSG00000138780|Q8NEC7-3|GSTCD nc|ENSG00000138780|Q8NEC7-3|GSTCD MSMS UPN46_class_I_Rep_3 1 529.8081665039062 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 74.636 1 74.636 74.136 75.136 0 0 0 0 0.3824 1 17322 17322 4.897 0 1 51784 3113 32361 32378 59577 59577 0.0754287892893899 VTLIILEVA 9 Unmodified _VTLIILEVA_ 0 0 0 nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3 nc|ENSG00000067842|Q16720-8|ATP2B3 nc|ENSG00000067842|Q16720-8|ATP2B3 MSMS UPN47_class_I_Rep_2 3 485.811767578125 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 57.325 1 60.617 60.117 61.117 3.2912 0 0 0 0.36505 1 13191 13191 7.2892 0 1 51785 1040 32362 32379 59578 59578 0.12501272285271625 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MULTI-MSMS UPN46_class_I_Rep_3 1 490.27655029296875 2 490.276575 978.538597 0.24288 0.00011908 -0.091037 -4.4633E-05 0.15185 7.4448E-05 490.27640096095433 68.429 0.20602 68.429 68.36 68.566 0 46 23 3 0 0 0 0.15547 1 15626 15626 24.991 0 1 636480 51786 4137 32363 32380 59579 59579 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MSMS UPN46_class_I_Rep_3 1 490.2765197753906 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 69.073 1 69.073 68.573 69.573 0 0 0 0 0.098423 1 15808 15808 24.991 0 1 51787 4137 32363 32380 59580 59580 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MULTI-MSMS UPN47_class_I_Rep_1 2 490.27630615234375 2 490.276575 978.538597 0.15784 7.7386E-05 0.064975 3.1856E-05 0.22282 0.00010924 490.2765148251913 62.022 1.6372 65.39 64.927 66.564 3.3681 292 114 4 0 0 0 0.21414 2 14820 14820;14905 19.362 0 1 2209000 51788 4137 32363 32380 59581;59582 59581 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MULTI-MSMS UPN47_class_I_Rep_1 2 490.77947998046875 2 490.276575 978.538597 0.1425 6.9866E-05 0.27744 0.00013602 0.41994 0.00020589 490.27650769745054 63.46 0.31134 66.82 66.655 66.966 3.3595 36 25 2 0 0 0 0.279 1 15035 15035 15.248 0 1 103460 51789 4137 32363 32380 59583 59583 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MULTI-MSMS UPN47_class_I_Rep_2 3 490.276611328125 2 490.276575 978.538597 0.26867 0.00013172 -0.11401 -5.5896E-05 0.15466 7.5827E-05 490.2763940534699 63.043 0.59616 66.299 66.154 66.751 3.2558 74 41 3 0 0 0 0.15547 4 14922 14922;14965;14995;15057 24.991 0 1 245460 51790 4137 32363 32380 59584;59585;59586;59587 59584 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MULTI-MSMS UPN47_class_I_Rep_2 3 490.27685546875 2 490.276575 978.538597 0.25048 0.0001228 1.0196 0.00049989 1.2701 0.0006227 490.2763785497145 63.889 0.19294 67.145 67.059 67.252 3.2556 22 16 2 0 0 0 0.15547 1 15183 15183 24.991 0 1 75215 51791 4137 32363 32380 59588 59588 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MSMS UPN47_class_I_Rep_2 3 490.2766418457031 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 63.602 1 66.858 66.358 67.358 3.2556 0 0 0 0.20399 1 15100 15100 16.149 0 1 51792 4137 32363 32380 59589 59589 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MSMS UPN47_class_I_Rep_2 3 490.2761535644531 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 63.638 1 66.894 66.394 67.394 3.2556 0 0 0 0.21832 1 15111 15111 15.248 0 1 51793 4137 32363 32380 59590 59590 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MULTI-MSMS UPN47_class_I_Rep_3 4 490.2763366699219 2 490.276575 978.538597 0.15645 7.6705E-05 0.09623 4.7179E-05 0.25268 0.00012388 490.2765497854635 62.374 1.4044 65.541 65.14 66.544 3.1667 210 90 4 0 0 0 0.15547 1 14926 14926 24.991 0 1 1915200 51794 4137 32363 32380 59591 59591 0.04846938211710494 VTLIYNASV 9 Unmodified _VTLIYNASV_ 0 0 0 ENSG00000164855|ENST00000297477|TMEM184A;ENST00000468535.5_1_7:1586590-1589169:-|nuORF ENSG00000164855|ENST00000297477|TMEM184A ENSG00000164855|ENST00000297477|TMEM184A MSMS UPN47_class_I_Rep_3 4 490.2767333984375 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 63.115 1 66.285 65.785 66.785 3.1698 0 0 0 0.098423 1 15011 15011 24.991 0 1 51795 4137 32363 32380 59592 59592 0.04846938211710494 VTLKKEEL 8 Unmodified _VTLKKEEL_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS UPN47_class_I_Rep_3 4 480.29217529296875 2 480.292225 958.569897 0.0033926 1.6294E-06 0.03307 1.5883E-05 0.036462 1.7513E-05 480.29209977670075 59.9 0.89924 63.065 62.59 63.49 3.1651 89 59 2 0 0 0 0.82752 1 14066 14066 7.2892 0 1 230140 + 51796 18478 32364 32381 59593 59593 0.08895511245816579 VTLKQCLI 8 Unmodified _VTLKQCLI_ 0 0 0 REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|129|2|anti-sense REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|129|2|anti-sense MSMS UPN46_class_I_Rep_3 1 459.7215881347656 2 459.278063 916.541574 NaN NaN NaN NaN NaN NaN NaN 95.192 1 95.192 94.692 95.692 0 0 0 0 0.40625 1 23103 23103 2.3027 0 1 + 51797 24481 32365 32382 59594 59594 0.07996490064874706 VTLKQCLI 8 Unmodified _VTLKQCLI_ 0 0 0 REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|129|2|anti-sense REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|129|2|anti-sense MSMS UPN46_class_I_Rep_3 1 459.7210998535156 2 459.278063 916.541574 NaN NaN NaN NaN NaN NaN NaN 95.511 1 95.511 95.011 96.011 0 0 0 0 0.40625 1 23192 23192 2.3027 0 1 + 51798 24481 32365 32382 59595 59595 0.07996490064874706 VTLKQCLI 8 Unmodified _VTLKQCLI_ 0 0 0 REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|129|2|anti-sense REV__L1M4a1_dup1700|chr10:112785388-112787679:-|2.005057938048649|0.0402602184695045|5.64|151.0|129|2|anti-sense MSMS UPN46_class_I_Rep_3 1 459.7215576171875 2 459.278063 916.541574 NaN NaN NaN NaN NaN NaN NaN 95.702 1 95.702 95.202 96.202 0 0 0 0 0.40625 1 23249 23249 2.3027 0 1 + 51799 24481 32365 32382 59596 59596 0.07996490064874706 VTLKTPGP 8 Unmodified _VTLKTPGP_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN47_class_I_Rep_2 3 406.7488098144531 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 69.747 1 73.023 72.523 73.523 3.2761 0 0 0 0.40604 1 16954 16954 2.5775 0 1 + 51800 18032 32366 32383 59597 59597 0.06707301357096185 VTLKTPGP 8 Unmodified _VTLKTPGP_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN47_class_I_Rep_2 3 406.7486267089844 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 69.893 1 73.169 72.669 73.669 3.2761 0 0 0 0.40604 1 16998 16998 2.5775 0 1 + 51801 18032 32366 32383 59598 59598 0.06707301357096185 VTLKTPGP 8 Unmodified _VTLKTPGP_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN47_class_I_Rep_2 3 406.7486267089844 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 70.02 1 73.296 72.796 73.796 3.2761 0 0 0 0.40604 1 17036 17036 2.5775 0 1 + 51802 18032 32366 32383 59599 59599 0.06707301357096185 VTLKTPGP 8 Unmodified _VTLKTPGP_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN47_class_I_Rep_2 3 406.74847412109375 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 70.16 1 73.443 72.943 73.943 3.2828 0 0 0 0.40604 1 17078 17078 2.5775 0 1 + 51803 18032 32366 32383 59600 59600 0.06707301357096185 VTLKTPGP 8 Unmodified _VTLKTPGP_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN47_class_I_Rep_2 3 406.74908447265625 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 72.498 1 75.795 75.295 76.295 3.2971 0 0 0 0.40746 1 17774 17774 0.69038 0 1 + 51804 18032 32366 32383 59601 59601 0.06707301357096185 VTLKTPGP 8 Unmodified _VTLKTPGP_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MSMS UPN48_class_I_Rep_1 5 406.7486267089844 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 70.151 1 73.611 73.111 74.111 3.4598 0 0 0 0.40746 1 16327 16327 0.69038 0 1 + 51805 18032 32366 32383 59602 59602 0.06707301357096185 VTLPARLNF 9 Unmodified _VTLPARLNF_ 0 0 0 ENSG00000166535|ENST00000299698|A2ML1 ENSG00000166535|ENST00000299698|A2ML1 ENSG00000166535|ENST00000299698|A2ML1 MULTI-MSMS UPN48_class_I_Rep_1 5 515.8057250976562 2 515.805834 1029.59712 0.31065 0.00016023 0.044075 2.2734E-05 0.35472 0.00018297 515.8058391983161 67.771 0.98067 71.222 70.743 71.723 3.4517 174 75 3 0 0 0 0.21527 3 15566 15518;15566;15717 19.257 0 1 757160 51806 4249 32367 32384 59603;59604;59605 59604 0.08350039576839663 VTLPARLNF 9 Unmodified _VTLPARLNF_ 0 0 0 ENSG00000166535|ENST00000299698|A2ML1 ENSG00000166535|ENST00000299698|A2ML1 ENSG00000166535|ENST00000299698|A2ML1 MULTI-MSMS UPN48_class_I_Rep_2 6 515.8062744140625 2 515.805834 1029.59712 0.35665 0.00018396 -0.056081 -2.8927E-05 0.30057 0.00015503 515.8057595229077 67.671 0.78727 71.167 70.713 71.5 3.4964 145 67 3 0 0 0 0.21527 1 15626 15626 19.257 0 1 778710 51807 4249 32367 32384 59606 59606 0.08350039576839663 VTLPARLNF 9 Unmodified _VTLPARLNF_ 0 0 0 ENSG00000166535|ENST00000299698|A2ML1 ENSG00000166535|ENST00000299698|A2ML1 ENSG00000166535|ENST00000299698|A2ML1 MULTI-MSMS UPN48_class_I_Rep_3 7 515.8056640625 2 515.805834 1029.59712 0.39595 0.00020423 -0.086797 -4.4771E-05 0.30915 0.00015946 515.8057471399972 67.509 1.0874 71.017 70.487 71.574 3.5077 207 96 3 0 0 0 0.16559 2 15374 15374;15532 24.021 1.2843 1 1138000 51808 4249 32367 32384 59607;59608 59607 0.08350039576839663 VTLPETLLF 9 Unmodified _VTLPETLLF_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS UPN48_class_I_Rep_2 6 516.800537109375 2 516.802426 1031.5903 0.34894 0.00018033 -0.63577 -0.00032857 -0.28682 -0.00014823 516.8020599308277 89.152 0.30789 92.89 92.745 93.053 3.7379 60 37 2 0 0 0 0.035561 3 21238 21238;21246;21249 54.774 0 1 185000 51809 4828 32368 32385 59609;59610;59611 59609 0.07576681905629812 VTLPETLLF 9 Unmodified _VTLPETLLF_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MSMS UPN48_class_I_Rep_2 6 516.8040771484375 2 516.802426 1031.5903 NaN NaN NaN NaN NaN NaN NaN 89.014 1 92.751 92.251 93.251 3.7379 0 0 0 0.089203 1 21194 21194 26.884 0 1 51810 4828 32368 32385 59612 59612 0.07576681905629812 VTLPETLLF 9 Unmodified _VTLPETLLF_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS UPN48_class_I_Rep_3 7 516.8036499023438 2 516.802426 1031.5903 0.36748 0.00018992 0.37054 0.0001915 0.73802 0.00038141 516.8026316880569 89.135 0.060234 92.964 92.93 92.99 3.8293 12 7 2 0 0 0 0.12799 1 21156 21156 28.487 0 1 61376 51811 4828 32368 32385 59613 59613 0.07576681905629812 VTLPETLLF 9 Unmodified _VTLPETLLF_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MSMS UPN48_class_I_Rep_3 7 516.8013305664062 2 516.802426 1031.5903 NaN NaN NaN NaN NaN NaN NaN 89.208 1 93.038 92.538 93.538 3.8293 0 0 0 0.041661 1 21170 21170 39.957 0 1 51812 4828 32368 32385 59614 59614 0.07576681905629812 VTLPPLLF 8 Unmodified _VTLPPLLF_ 0 0 0 REV__L1M1_dup283|chr1:107926375-107929137:+|2.0018239845247385|0.0123661827990278|7.34|151.0|159|3|anti-sense REV__L1M1_dup283|chr1:107926375-107929137:+|2.0018239845247385|0.0123661827990278|7.34|151.0|159|3|anti-sense MSMS UPN48_class_I_Rep_3 7 450.2217102050781 2 450.283672 898.552791 NaN NaN NaN NaN NaN NaN NaN 49.119 1 52.748 52.248 53.248 3.6291 0 0 0 0.40738 1 9826 9826 0.79363 0 1 + 51813 24061 32369 32386 59615 59615 0.09945635430665334 VTLQDEVFY 9 Unmodified _VTLQDEVFY_ 0 0 0 REV__L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|215|1|anti-sense REV__L1PB1_dup3389|chr4:112361274-112367204:+|2.713812908482109|0.0684356205439088|5.31|151.0|215|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2918701171875 2 557.276772 1112.53899 0.4463 0.00024871 -0.064841 -3.6135E-05 0.38146 0.00021258 557.276678361571 70.895 0.81036 74.106 73.751 74.561 3.2113 166 70 3 0 0 0 0.44858 1 17300 17300 5.2307 0 1 463230 + 51814 30386 32370 32387 59616 59616 -0.012776868590890444 VTLQLLKP 8 Unmodified _VTLQLLKP_ 0 0 0 ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF MSMS UPN47_class_I_Rep_3 4 456.3007507324219 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 30.698 1 34.01 33.51 34.51 3.3116 0 0 0 0.40753 1 5133 5133 0.6015 0 1 51815 6251 32371 32388 59617 59617 0.1262842283366581 VTLQLLKP 8 Unmodified _VTLQLLKP_ 0 0 0 ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF MSMS UPN48_class_I_Rep_1 5 456.301513671875 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 52.775 1 56.294 55.794 56.794 3.5192 0 0 0 0.40753 1 11009 11009 0.6015 0 1 51816 6251 32371 32388 59618 59618 0.1262842283366581 VTLQLLKP 8 Unmodified _VTLQLLKP_ 0 0 0 ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF MSMS UPN48_class_I_Rep_3 7 456.3011779785156 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.176 1 43.827 43.327 44.327 3.6509 0 0 0 0.40643 1 7114 7114 2.0598 0 1 51817 6251 32371 32388 59619 59619 0.1262842283366581 VTLQLLKP 8 Unmodified _VTLQLLKP_ 0 0 0 ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF ENST00000344120.4_1_5:141699332-141704471:-|nuORF MSMS UPN48_class_I_Rep_3 7 456.301513671875 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 53.105 1 56.688 56.188 57.188 3.5836 0 0 0 0.40753 1 11034 11034 0.6015 0 1 51818 6251 32371 32388 59620 59620 0.1262842283366581 VTLQQVLLHA 10 Unmodified _VTLQQVLLHA_ 0 0 0 REV__ENSG00000095777|ENST00000642920|MYO3A REV__ENSG00000095777|ENST00000642920|MYO3A MSMS UPN48_class_I_Rep_3 7 561.3401489257812 2 561.337498 1120.66044 NaN NaN NaN NaN NaN NaN NaN 76.455 1 80.038 79.538 80.538 3.5831 0 0 0 0.53105 1 18008 18008 1.8442 0 1 + 51819 18054 32372 32389 59621 59621 0.10493980294086214 VTLRIVKLPV 10 Unmodified _VTLRIVKLPV_ 0 0 0 REV__nc|ENSG00000171790|Q499Z3-2|SLFNL1 REV__nc|ENSG00000171790|Q499Z3-2|SLFNL1 MSMS UPN47_class_I_Rep_2 3 569.39013671875 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 73.089 1 76.386 75.886 76.886 3.2971 0 0 0 0.53105 1 17951 17951 0.45834 0 1 + 51820 20423 32373 32390 59622 59622 0.2016030712159136 VTLRPHSEL 9 Unmodified _VTLRPHSEL_ 0 0 0 REV__L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|97|2|anti-sense REV__L1MA3_dup3347|chr6:38318195-38320359:-|2.114578391707808|0.0207796186101788|6.67|151.0|97|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 526.2460327148438 2 526.298373 1050.58219 -0.11349 -5.973E-05 -0.95909 -0.00050477 -1.0726 -0.0005645 526.298165851406 32.75 0.33166 36.463 36.332 36.664 3.7131 32 26 2 0 0 0 0.12321 1 5695 5695 1.6526 1.1279 1 66197 + 51821 25022 32374 32391 59623 59623 0.058925477088678235 VTLSLFDKL 9 Unmodified _VTLSLFDKL_ 0 0 0 REV__ENSG00000231721.7,LINC-PINT,chr7,-,I18.1,130945856,130959868|23|10.14|1|intron REV__ENSG00000231721.7,LINC-PINT,chr7,-,I18.1,130945856,130959868|23|10.14|1|intron MSMS UPN48_class_I_Rep_3 7 518.3084106445312 2 518.307875 1034.6012 NaN NaN NaN NaN NaN NaN NaN 108.71 1 112.38 111.88 112.88 3.6751 0 0 0 0.32573 1 25752 25752 9.3831 0 1 + 51822 21299 32375 32392 59624 59624 0.08528084279919312 VTLSLLLTQ 9 Unmodified _VTLSLLLTQ_ 0 0 0 REV__L1ME3_dup7775|chr17:527053-527267:-|1.3017668634751127|0.4984530516913479|1.38|150.0|10|1|anti-sense REV__L1ME3_dup7775|chr17:527053-527267:-|1.3017668634751127|0.4984530516913479|1.38|150.0|10|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 494.3078918457031 2 494.307875 986.601197 0.26957 0.00013325 0.15011 7.4202E-05 0.41969 0.00020745 494.3078080287709 79.456 0.32282 83.089 82.929 83.252 3.6331 42 35 2 0 0 0 0.49026 1 18845 18845 1.6526 0 1 93136 + 51823 27964 32376 32393 59625 59625 0.10736084279915303 VTLSLTAKR 9 Unmodified _VTLSLTAKR_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MSMS UPN48_class_I_Rep_3 7 494.80975341796875 2 494.811116 987.60768 NaN NaN NaN NaN NaN NaN NaN 79.342 1 82.984 82.484 83.484 3.6423 0 0 0 0.39518 1 18809 18809 1.8442 0 1 51824 1148 32377 32394 59626 59626 0.11338022231279865 VTLTCLLNF 9 Unmodified _VTLTCLLNF_ 0 0 0 nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22 nc|ENSG00000012124|P20273-2|CD22 nc|ENSG00000012124|P20273-2|CD22 MSMS UPN46_class_I_Rep_3 1 512.3098754882812 2 512.280803 1022.54705 NaN NaN NaN NaN NaN NaN NaN 81.265 1 81.265 80.765 81.765 0 0 0 0 0.37476 1 19185 19185 6.7232 1.9672 1 51825 780 32378 32395 59627 59627 0.03668168856700049 VTLTLSARQT 10 Unmodified _VTLTLSARQT_ 0 0 0 REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|210|2|anti-sense REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|210|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 545.317626953125 2 545.316763 1088.61897 0.49702 0.00027103 -0.12775 -6.9665E-05 0.36927 0.00020137 545.3166411300172 82.681 0.73772 86.079 85.853 86.591 3.3984 134 93 2 0 0 0 0.56155 1 20572 20572 2.7352 0 1 524520 + 51826 30493 32379 32396 59628 59628 0.07820799534761136 VTLTLSARQT 10 Unmodified _VTLTLSARQT_ 0 0 0 REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|210|2|anti-sense REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|210|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 545.316763 1088.61897 0.3826 0.00020864 0.26814 0.00014622 0.65074 0.00035486 545.3167686374301 86.073 0.086388 86.073 86.02 86.107 0 -0.0032667 0.00036884 NaN 2.7352 27 8 4 NaN NaN NaN NaN 0 NaN NaN 0 642020 + 51827 30493 32379 32396 0.07820799534761136 VTLTLSARQT 10 Unmodified _VTLTLSARQT_ 0 0 0 REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|210|2|anti-sense REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|210|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 545.316763 1088.61897 0.49702 0.00027103 -0.12775 -6.9665E-05 0.36927 0.00020137 545.3166411300172 82.681 0.73772 86.079 85.853 86.591 3.3984 0.0032667 -6.2935E-05 NaN 2.7352 134 93 2 NaN NaN NaN NaN 0 NaN NaN 0 524520 + 51828 30493 32379 32396 0.07820799534761136 VTLTRIELSK 10 Unmodified _VTLTRIELSK_ 0 0 0 REV__nc|ENSG00000066032|P26232-3|CTNNA2 REV__nc|ENSG00000066032|P26232-3|CTNNA2 MSMS UPN48_class_I_Rep_2 6 580.3540649414062 2 580.355888 1158.69722 NaN NaN NaN NaN NaN NaN NaN 54.725 1 58.307 57.807 58.807 3.5817 0 0 0 0.53105 1 11595 11595 1.1933 0 1 + 51829 17761 32380 32397 59629 59629 0.12422232119956789 VTLTTRSP 8 Unmodified _VTLTTRSP_ 0 0 0 LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|16|1|sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|16|1|sense LTR12C_dup375|chr2:240538106-240539570:+|2.0448739626865606|0.1958601013057368|3.38|151.0|16|1|sense MSMS UPN48_class_I_Rep_3 7 437.7517395019531 2 437.753267 873.491981 NaN NaN NaN NaN NaN NaN NaN 41.954 1 45.6 45.1 46.1 3.6458 0 0 0 0.40364 1 7636 7636 5.7604 0 1 51830 15549 32381 32398 59630 59630 0.050174983804254225 VTLVAAAVSY 10 Unmodified _VTLVAAAVSY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-SECPEP UPN47_class_I_Rep_2 3 497.2627258300781 2 497.2844 992.554247 -0.049256 -2.4494E-05 -0.33715 -0.00016766 -0.38641 -0.00019215 497.28431706424806 43.786 0.16973 47.144 47.041 47.211 3.358 9 7 2 0 0 0 0.84575 1 9078 9078 1.4819 0 1 23216 51831 1924 32382 32399 59631 59631 0.05767224728754172 VTLVRIADL 9 Unmodified _VTLVRIADL_ 0 0 0 ENST00000529624.5_3_15:28877823-28916776:+|nuORF ENST00000529624.5_3_15:28877823-28916776:+|nuORF ENST00000529624.5_3_15:28877823-28916776:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 500.31414794921875 2 500.313492 998.612431 0.21474 0.00010744 -0.061202 -3.062E-05 0.15354 7.6817E-05 500.31336472871413 73.474 0.10989 76.779 76.725 76.834 3.3048 10 8 2 0 0 0 0.44742 1 18074 18074 5.2969 0 1 36698 51832 7287 32383 32400 59632 59632 0.11306906374034043 VTLVVINR 8 Unmodified _VTLVVINR_ 0 0 0 L1ME3F_dup285|chr1:176092306-176093373:+|1.0303459878049834|0.0081713409617963|6.98|151.0|52|1|anti-sense L1ME3F_dup285|chr1:176092306-176093373:+|1.0303459878049834|0.0081713409617963|6.98|151.0|52|1|anti-sense L1ME3F_dup285|chr1:176092306-176093373:+|1.0303459878049834|0.0081713409617963|6.98|151.0|52|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 456.7553405761719 2 457.295102 912.575651 -0.17 -7.7741E-05 1.4148 0.00064699 1.2448 0.00056925 457.29489441964085 66.203 0.16016 69.388 69.266 69.426 3.1853 14 10 2 0 0 0 0.72333 1 15931 15931 2.3027 0 1 39045 51833 12816 32384 32401 59633 59633 0.11586654548136721 VTLYYIIG 8 Unmodified _VTLYYIIG_ 0 0 0 REV__L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|15|1|sense REV__L1ME1_dup15935|chr9:3462034-3463688:+|1.1767677715416325|0.2456290850684143|2.26|151.0|15|1|sense MSMS UPN46_class_I_Rep_3 1 471.2711181640625 2 471.270761 940.52697 NaN NaN NaN NaN NaN NaN NaN 64.936 1 64.936 64.436 65.436 0 0 0 0 0.39624 1 14652 14652 9.3474 0 1 + 51834 27625 32385 32402 59634 59634 0.05432741188383261 VTMLILQI 8 Unmodified _VTMLILQI_ 0 0 0 REV__ENST00000505686.5_1_5:124080582-124080651:-|nuORF REV__ENST00000505686.5_1_5:124080582-124080651:-|nuORF MSMS UPN46_class_I_Rep_3 1 465.77801513671875 2 465.788264 929.561975 NaN NaN NaN NaN NaN NaN NaN 75.698 1 75.698 75.198 76.198 0 0 0 0 0.40404 1 17616 17616 5.2307 0 1 + 51835 22715 32386 32403 59635 59635 0.09437660724688612 VTMMPIII 8 Unmodified _VTMMPIII_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MULTI-MSMS UPN47_class_I_Rep_3 4 459.2699890136719 2 459.263568 916.512582 -0.64847 -0.00029782 -0.074124 -3.4042E-05 -0.72259 -0.00033186 459.2632596880185 38.087 0.85192 41.329 40.966 41.818 3.2414 112 62 2 0 0 0 0.82752 1 7450 7450 14.582 0 1 258250 + 51836 18597 32387 32404 59636 59636 0.050986294442395774 VTNIDVKI 8 Unmodified _VTNIDVKI_ 0 0 0 L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 451.2708740234375 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 55.348 1 58.827 58.327 59.327 3.4785 0 0 0 0.39436 1 12555 12555 10.074 0 1 51837 9322 32388 32405 59637 59637 0.07378955557271638 VTNIDVKI 8 Unmodified _VTNIDVKI_ 0 0 0 L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 451.2714538574219 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 55.513 1 58.991 58.491 59.491 3.4785 0 0 0 0.35715 1 12606 12606 20.454 0 1 51838 9322 32388 32405 59638 59638 0.07378955557271638 VTNIDVKI 8 Unmodified _VTNIDVKI_ 0 0 0 L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 451.27093505859375 2 451.271293 900.528032 -0.073256 -3.3058E-05 -0.46314 -0.000209 -0.5364 -0.00024206 451.2710962625677 55.619 0.63676 58.93 58.731 59.368 3.3102 54 37 2 0 0 0 0.82752 2 12730 12670;12730 34.402 0 1 90459 51839 9322 32388 32405 59639;59640 59640 0.07378955557271638 VTNPSIGLT 9 Unmodified _VTNPSIGLT_ 0 0 0 REV__L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|218|3|anti-sense REV__L1PA7_dup10828|chr13:40706745-40710827:-|2.1353682222619788|0.1507533137751706|3.82|151.0|218|3|anti-sense MSMS UPN48_class_I_Rep_3 7 451.59979248046875 2 451.2531 900.491647 NaN NaN NaN NaN NaN NaN NaN 57.456 1 60.987 60.487 61.487 3.5317 0 0 0 0.38639 1 12361 12361 3.9444 0 1 + 51840 29983 32389 32406 59641 59641 0.037420786605480316 VTNPSLTAAS 10 Unmodified _VTNPSLTAAS_ 0 0 0 REV__MLT1C_dup19079|chr21:33290843-33291268:-|1.6484560956672103|0.3239312467471732|2.35|151.0|21|1|anti-sense REV__MLT1C_dup19079|chr21:33290843-33291268:-|1.6484560956672103|0.3239312467471732|2.35|151.0|21|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.7532958984375 2 480.753464 959.492375 -0.37548 -0.00018051 -0.24863 -0.00011953 -0.62411 -0.00030004 480.75342466369 40.308 0.80827 43.545 43.244 44.053 3.2372 115 51 3 0 0 0 0.56155 1 8197 8197 2.7352 0 1 243410 + 51841 31645 32390 32407 59642 59642 0.011008733095991374 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MSMS UPN48_class_I_Rep_1 5 570.2959594726562 2 570.29583 1138.57711 0.52235 0.00029789 -0.17482 -9.9699E-05 0.34753 0.00019819 570.2956273173245 58.42 0.81815 61.907 61.507 62.325 3.487 128 48 3 0 0 0 0.043808 4 12735 12690;12735;12781;12824 51.488 16.556 1 843060 51842 3267 32391 32408 59643;59644;59645;59646 59644 0.013362438462081627 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MSMS UPN48_class_I_Rep_2 6 570.2957763671875 2 570.29583 1138.57711 0.5777 0.00032946 -0.31642 -0.00018045 0.26128 0.00014901 570.2954734090486 58.295 0.96887 61.794 61.403 62.372 3.4987 148 56 4 0 0 0 0.061655 4 12644 12644;12698;12740;12777 43.982 15.734 1 685980 51843 3267 32391 32408 59647;59648;59649;59650 59647 0.013362438462081627 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MSMS UPN48_class_I_Rep_3 7 570.2959594726562 2 570.29583 1138.57711 0.40452 0.0002307 -0.015774 -8.996E-06 0.38875 0.0002217 570.295763539352 58.243 0.76452 61.774 61.42 62.185 3.5317 134 48 3 0 0 0 0.065535 6 12604 12536;12561;12573;12604;12644;12689 42.312 13.624 1 889990 51844 3267 32391 32408 59651;59652;59653;59654;59655;59656 59654 0.013362438462081627 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 570.29583 1138.57711 0.37312 0.00021279 0.15628 8.9125E-05 0.52939 0.00030191 570.2959168987071 58.211 0.69236 61.648 61.219 61.911 3.437 -0.025898 0.00039266 NaN 51.488 103 43 3 NaN NaN NaN NaN 0 NaN NaN 0 168930 51845 3267 32391 32408 0.013362438462081627 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MATCH UPN47_class_I_Rep_2 3 2 570.29583 1138.57711 0.51987 0.00029648 -0.37021 -0.00021113 0.14966 8.535E-05 570.2957142336536 58.28 0.6679 61.562 61.306 61.973 3.2818 -0.11219 -0.00020785 NaN 51.488 88 39 4 NaN NaN NaN NaN 0 NaN NaN 0 143460 51846 3267 32391 32408 0.013362438462081627 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 570.29583 1138.57711 0.3395 0.00019362 -0.19805 -0.00011295 0.14145 8.0667E-05 570.2957777065162 58.568 0.68317 61.734 61.386 62.07 3.1658 0.0602 -1.1483E-05 NaN 51.488 105 42 3 NaN NaN NaN NaN 0 NaN NaN 0 132020 51847 3267 32391 32408 0.013362438462081627 VTNRFDQLF 9 Unmodified _VTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 570.29583 1138.57711 0.3958 0.00022572 -2.3032 -0.0013135 -1.9074 -0.0010878 570.294489501547 57.867 0.074478 61.398 61.358 61.432 3.5317 -0.27555 -0.0024126 NaN 51.488 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 81599 51848 3267 32391 32408 0.013362438462081627 VTNTPRWGPF 10 Unmodified _VTNTPRWGPF_ 0 0 0 REV__L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|8|1|sense REV__L1PB3_dup1502|chr7:107504945-107507222:-|4.4015085617333085|0.0497643171426208|6.47|151.0|8|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.2950439453125 2 587.803823 1173.59309 0.41928 0.00024646 0.26827 0.00015769 0.68756 0.00040415 587.8039232327768 43.519 1.3731 47.029 46.637 48.01 3.5103 240 108 3 0 0 0 0.4965 1 8078 8078 12.241 0 1 796830 + 51849 30545 32392 32409 59657 59657 0.013239500831332407 VTPARVQF 8 Unmodified _VTPARVQF_ 0 0 0 ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2;ENST00000374505.6_1_1:24120901-24121159:+|nuORF ENST00000472213.1_1_1:24120901-24121219:+|nuORF ENST00000472213.1_1_1:24120901-24121219:+|nuORF MSMS UPN46_class_I_Rep_3 1 459.2544250488281 2 459.263802 916.513051 NaN NaN NaN NaN NaN NaN NaN 44.696 1 44.696 44.196 45.196 0 0 0 0 0.40604 1 9024 9024 2.5775 0 1 51850 765 32393 32410 59658 59658 0.05145508479949967 VTPASRRL 8 Unmodified _VTPASRRL_ 0 0 0 ENSG00000278558|ENST00000612978|TMEM191B ENSG00000278558|ENST00000612978|TMEM191B ENSG00000278558|ENST00000612978|TMEM191B MULTI-MSMS UPN46_class_I_Rep_3 1 450.2748107910156 2 450.274701 898.534849 0.18562 8.3581E-05 0.11008 4.9566E-05 0.2957 0.00013315 450.2747464375719 89.056 0.34383 89.056 88.757 89.101 0 52 35 2 0 0 0 0.82752 1 21368 21368 0.6015 0 1 174190 51851 5841 32394 32411 59659 59659 0.08152313228526964 VTPDQKKIW 9 Unmodified _VTPDQKKIW_ 0 0 0 REV__L1MCa_dup6748|chr18:9372518-9373258:+|1.196195089495108|0.0272512606946507|5.46|151.0|20|2|sense REV__L1MCa_dup6748|chr18:9372518-9373258:+|1.196195089495108|0.0272512606946507|5.46|151.0|20|2|sense MSMS UPN48_class_I_Rep_2 6 557.800537109375 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 69.901 1 73.423 72.923 73.923 3.5216 0 0 0 0.36505 1 16225 16225 7.2892 2.0586 1 + 51852 27223 32395 32412 59660 59660 0.06598004885699993 VTPKYKLRY 9 Unmodified _VTPKYKLRY_ 0 0 0 MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|19|3|anti-sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|19|3|anti-sense MER21C_dup3136|chrX:74251449-74251749:+|3.4065740599769225|0.1916249013812268|4.15|150.0|19|3|anti-sense MSMS UPN47_class_I_Rep_2 3 584.348388671875 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 116.58 1 120.08 119.58 120.58 3.4965 0 0 0 0.4007 1 28467 28467 0.52476 0 1 51853 15894 32396 32413 59661 59661 0.10450570673742732 VTPLLSSY 8 Unmodified _VTPLLSSY_ 0 0 0 REV__L1MB5_dup3800|chr9:5703606-5704215:-|1.062902531717513|0.0556194496400856|4.26|151.0|39|2|anti-sense REV__L1MB5_dup3800|chr9:5703606-5704215:-|1.062902531717513|0.0556194496400856|4.26|151.0|39|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.2444152832031 2 440.244744 878.474934 0.16118 7.0958E-05 4.0678 0.0017908 4.229 0.0018618 440.2443793129309 100.79 0.05983 100.79 100.76 100.82 0 20 5 5 0 0 0 0.82752 1 24583 24583 9.3474 0 1 219070 + 51854 26063 32397 32414 59662 59662 0.03083577774623336 VTPMTTLTV 9 Unmodified _VTPMTTLTV_ 0 0 0 REV__ENSG00000279012|ENST00000624187|OR51B2 REV__ENSG00000279012|ENST00000624187|OR51B2 MULTI-MSMS UPN47_class_I_Rep_2 3 481.7650146484375 2 481.764986 961.515419 0.12067 5.8135E-05 -0.047343 -2.2808E-05 0.073327 3.5327E-05 481.76486995110184 66.272 0.59027 69.531 69.293 69.884 3.2588 57 36 2 0 0 0 0.28552 1 15908 15908 14.838 0 1 115250 + 51855 20584 32398 32415 59663 59663 0.03312176102735975 VTPMTTLTV 9 Unmodified _VTPMTTLTV_ 0 0 0 REV__ENSG00000279012|ENST00000624187|OR51B2 REV__ENSG00000279012|ENST00000624187|OR51B2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 481.764986 961.515419 0.096245 4.6367E-05 0.02169 1.0449E-05 0.11793 5.6817E-05 481.76493553428935 66.101 0.38956 69.458 69.241 69.631 3.3576 -0.053554 1.2536E-05 NaN 14.838 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 87876 + 51856 20584 32398 32415 0.03312176102735975 VTPPLYIP 8 Unmodified _VTPPLYIP_ 0 0 0 REV__L1PA6_dup5165|chr14:85969036-85975196:-|1.2369374337579448|0.0263930768175193|5.55|151.0|310|3|anti-sense REV__L1PA6_dup5165|chr14:85969036-85975196:-|1.2369374337579448|0.0263930768175193|5.55|151.0|310|3|anti-sense MSMS UPN48_class_I_Rep_2 6 450.3075256347656 2 450.265479 898.516405 NaN NaN NaN NaN NaN NaN NaN 44.448 1 48.21 47.71 48.71 3.7617 0 0 0 0.40738 1 8472 8472 0.79363 0 1 + 51857 29932 32399 32416 59664 59664 0.06308758533930359 VTPQRIMVKG 10 Unmodified _VTPQRIMVKG_ 0 0 0 ENSG00000106410|ENST00000467773|NOBOX ENSG00000106410|ENST00000467773|NOBOX ENSG00000106410|ENST00000467773|NOBOX MULTI-MSMS UPN47_class_I_Rep_2 3 564.8328857421875 2 564.831526 1127.6485 0.04854 2.7417E-05 1.6452 0.00092924 1.6937 0.00095665 564.8322017528527 13.212 0.39149 16.6 16.407 16.799 3.388 51 39 2 0 0 0 0.56354 1 273 273 1.3295 1.3295 1 50245 51858 1788 32400 32417 59665 59665 0.08978040279225752 VTPQRPPL 8 Unmodified _VTPQRPPL_ 0 0 0 REV__ENSG00000182568|ENST00000338745|SATB1 REV__ENSG00000182568|ENST00000338745|SATB1 MULTI-MSMS UPN48_class_I_Rep_2 6 454.2718811035156 2 454.271627 906.528701 0.17832 8.1004E-05 -0.39787 -0.00018074 -0.21956 -9.9738E-05 454.27145224561025 29.457 0.4356 33.089 32.897 33.333 3.6316 67 48 2 0 0 0 0.82752 1 4146 4146 1.8442 0 1 62241 + 51859 20760 32401 32418 59666 59666 0.07169794996980272 VTPRGHRF 8 Unmodified _VTPRGHRF_ 0 0 0 REV__ENSG00000214688|ENST00000441508|C10orf105 REV__ENSG00000214688|ENST00000441508|C10orf105 MULTI-MSMS UPN46_class_I_Rep_3 1 484.84014892578125 2 485.272493 968.530432 0.051787 2.5131E-05 -1.4406 -0.0006991 -1.3888 -0.00067396 485.2717651764246 31.414 0.54673 31.414 31.175 31.722 0 54 38 2 0 0 0 0.82752 1 5314 5314 2.0598 0 1 74981 + 51860 21265 32402 32419 59667 59667 0.04490848805608039 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MSMS UPN46_class_I_Rep_3 1 484.7174072265625 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 46.413 1 46.413 45.913 46.913 0 0 0 0 0.40738 1 9515 9515 0.79363 0 1 + 51861 18373 32403 32420 59668 59668 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MULTI-SECPEP UPN47_class_I_Rep_1 2 484.7375793457031 2 484.787444 967.560336 -0.27881 -0.00013516 -1.2385 -0.00060039 -1.5173 -0.00073555 484.7878815697241 38.647 0.10692 42.313 42.241 42.348 3.6652 14 8 2 0 0 0 0.72333 1 7459 7459 2.5775 0 1 32262 + 51862 18373 32403 32420 59669 59669 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MULTI-MSMS UPN48_class_I_Rep_3 7 485.2855529785156 2 484.787444 967.560336 0.11957 5.7964E-05 -2.3132 -0.0011214 -2.1937 -0.0010635 484.78804666769076 50.544 1.0955 54.165 53.543 54.638 3.621 115 67 2 0 0 0 0.82752 6 10140 10140;10185;10211;10236;10249;10288 4.756 0 1 212310 + 51863 18373 32403 32420 59670;59671;59672;59673;59674;59675 59670 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MULTI-MSMS UPN48_class_I_Rep_3 7 485.2859802246094 2 484.787444 967.560336 0.15657 7.5901E-05 -1.8738 -0.00090838 -1.7172 -0.00083248 484.78811293318444 57.418 0.56018 60.95 60.813 61.374 3.5317 65 45 2 0 0 0 0.82752 1 12382 12382 2.0598 0 1 96911 + 51864 18373 32403 32420 59676 59676 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MSMS UPN48_class_I_Rep_3 7 484.7882995605469 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 61.289 1 64.802 64.302 65.302 3.5129 0 0 0 0.4044 1 13532 13532 4.756 0 1 + 51865 18373 32403 32420 59677 59677 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MULTI-MATCH UPN46_class_I_Rep_3 1 2 484.787444 967.560336 0.20552 9.9632E-05 0.41524 0.0002013 0.62076 0.00030094 484.7878322562107 53.988 0.043919 53.988 53.955 53.999 0 -0.088791 0.0025164 NaN 4.756 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 75604 + 51866 18373 32403 32420 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 484.787444 967.560336 0.2638 0.00012789 1.1639 0.00056422 1.4277 0.00069211 484.78789335654983 42.483 0.67221 42.483 42.062 42.734 0 -0.016963 2.4848E-05 NaN 2.5775 131 68 2 NaN NaN NaN NaN 0 NaN NaN 0 367940 + 51867 18373 32403 32420 0.07525787750932977 VTPRLHFV 8 Unmodified _VTPRLHFV_ 0 0 0 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 484.787444 967.560336 -0.35132 -0.00017032 1.0079 0.00048861 0.65655 0.00031829 484.78803485398606 39.471 0.10267 42.709 42.658 42.761 3.2379 0.20915 -0.00012639 NaN 2.5775 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 32678 + 51868 18373 32403 32420 0.07525787750932977 VTPRRWRI 8 Unmodified _VTPRRWRI_ 0 0 0 REV__ENST00000392122.3_1_1:167403267-167407856:-|nuORF REV__ENST00000392122.3_1_1:167403267-167407856:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 542.3292236328125 2 542.330342 1082.64613 0.57245 0.00031045 -1.4045 -0.0007617 -0.83206 -0.00045125 542.3294113758011 58.513 0.33263 62.011 61.903 62.235 3.4987 29 18 2 0 0 0 0.82752 1 12754 12754 2.0598 0 1 117410 + 51869 21914 32404 32421 59678 59678 0.10811372656439744 VTPSEVLPF 9 Unmodified _VTPSEVLPF_ 0 0 0 ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 494.7705993652344 2 494.771126 987.527698 0.29005 0.00014351 -0.21095 -0.00010437 0.079098 3.9136E-05 494.7710392056051 77.946 0.59685 81.568 81.242 81.838 3.6216 80 64 2 0 0 0 0.33654 1 18419 18419 11.64 0 1 115660 51870 7687 32405 32422 59679 59679 0.0334353583742768 VTPSEVLPF 9 Unmodified _VTPSEVLPF_ 0 0 0 ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 494.771126 987.527698 0.19995 9.8928E-05 -0.059738 -2.9557E-05 0.14021 6.9371E-05 494.77108451577476 78.061 0.34108 81.583 81.373 81.714 3.5221 0.015238 -1.2145E-05 NaN 11.64 49 37 2 NaN NaN NaN NaN 0 NaN NaN 0 121710 51871 7687 32405 32422 0.0334353583742768 VTPSHAIPTV 10 Unmodified _VTPSHAIPTV_ 0 0 0 L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|22|2|sense L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|22|2|sense L1MDa_dup2826|chr7:67204887-67206059:-|1.250759439663505|0.0588768239462415|4.41|151.0|22|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.2877502441406 2 511.287474 1020.5604 0.26562 0.00013581 -0.17984 -9.1952E-05 0.085776 4.3856E-05 511.287314437519 59.296 0.66941 62.713 62.394 63.063 3.4171 81 47 2 0 0 0 0.47413 1 13680 13680 13.906 0 1 224380 51872 12114 32406 32423 59680 59680 0.050937429602640805 VTPVTRAIL 9 Unmodified _VTPVTRAIL_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS UPN48_class_I_Rep_2 6 485.3081970214844 2 485.30821 968.601866 0.16018 7.7737E-05 -0.18756 -9.1026E-05 -0.027383 -1.3289E-05 485.30803157864375 48.497 1.1296 52.215 51.766 52.896 3.7175 182 79 3 0 0 0 0.066633 2 9656 9656;9735 41.84 0 1 1253200 51873 3353 32407 32424 59681;59682 59681 0.11630923719621933 VTQESKAVY 9 Unmodified _VTQESKAVY_ 0 0 0 ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 ENSG00000139641|ENST00000394048|ESYT1 MULTI-MSMS UPN46_class_I_Rep_3 1 512.76904296875 2 512.769114 1023.52368 -0.04752 -2.4367E-05 0.19231 9.8613E-05 0.14479 7.4246E-05 512.7692394854253 25.106 0.40387 25.106 24.992 25.396 0 55 38 2 0 0 0 0.37599 1 3395 3395 9.3831 0 1 54206 51874 3148 32408 32425 59683 59683 0.012854463437065533 VTQIKNLF 8 Unmodified _VTQIKNLF_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-SECPEP UPN47_class_I_Rep_2 3 481.7564392089844 2 481.78711 961.559667 0.24699 0.000119 -3.912 -0.0018848 -3.665 -0.0017658 481.78679738595474 51.375 0.19702 54.714 54.633 54.83 3.3386 11 8 2 0 0 0 0.72333 1 11400 11400 2.3027 0 1 28719 + 51875 19456 32409 32426 59684 59684 0.07734948311212975 VTQISRTCL 9 Unmodified _VTQISRTCL_ 0 0 0 L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|38|2|anti-sense L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|38|2|anti-sense L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.7777404785156 2 510.778959 1019.54336 0.31968 0.00016328 -0.54623 -0.00027901 -0.22656 -0.00011572 510.7786338803062 25.697 0.31795 29.264 29.124 29.442 3.5667 65 36 2 0 0 0 0.46434 1 3003 3003 4.3292 0 1 87503 51876 10179 32410 32427 59685 59685 0.03437499082804152 VTQKLGLQY 9 Unmodified _VTQKLGLQY_ 0 0 0 nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1 nc|ENSG00000071282|Q9NZU5-2|LMCD1 nc|ENSG00000071282|Q9NZU5-2|LMCD1 MULTI-SECPEP UPN47_class_I_Rep_3 4 525.3041381835938 2 525.303124 1048.5917 0.24377 0.00012805 0.018461 9.6976E-06 0.26223 0.00013775 525.303068012252 58.545 0.16546 61.71 61.669 61.835 3.1658 22 12 2 0 0 0 0.11705 1 13602 13602 10.824 0 1 71971 51877 1087 32411 32428 59686 59686 0.06934315994362805 VTQKRKSEFY 10 Unmodified _VTQKRKSEFY_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|134|3|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|134|3|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|134|3|sense MSMS UPN47_class_I_Rep_2 3 643.3483276367188 2 643.348594 1284.68264 NaN NaN NaN NaN NaN NaN NaN 91.619 1 95.081 94.581 95.581 3.4613 0 0 0 0.53105 1 22671 22671 3.2813 0.54611 1 51878 9404 32412 32429 59687 59687 0.051681599718449434 VTQKRTVE 8 Unmodified _VTQKRTVE_ 0 0 0 REV__ENSG00000035499.13,DEPDC1B,chr5,-,I12.1,60599261,60603390|26|6.06|4|intron REV__ENSG00000035499.13,DEPDC1B,chr5,-,I12.1,60599261,60603390|26|6.06|4|intron MSMS UPN47_class_I_Rep_2 3 480.77642822265625 2 480.777274 959.539994 NaN NaN NaN NaN NaN NaN NaN 35.469 1 38.881 38.381 39.381 3.4114 0 0 0 0.388 1 6543 6543 12.532 0 1 + 51879 17635 32413 32430 59688 59688 0.058605723004689025 VTQLKQKL 8 Unmodified _VTQLKQKL_ 0 0 0 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MSMS UPN47_class_I_Rep_1 2 479.30792236328125 2 479.30821 956.601866 -0.37985 -0.00018206 -0.17552 -8.4128E-05 -0.55537 -0.00026619 479.30805555194473 14.555 0.20912 18.03 17.91 18.119 3.475 42 24 2 0 0 0 0.82752 1 581 581 7.9102 0 1 60173 + 51880 21311 32414 32431 59689 59689 0.12182923719592509 VTQLKQKL 8 Unmodified _VTQLKQKL_ 0 0 0 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MSMS UPN47_class_I_Rep_2 3 479.30804443359375 2 479.30821 956.601866 -0.2308 -0.00011062 -0.28816 -0.00013812 -0.51896 -0.00024874 479.30798355582857 14.644 0.25833 18.031 17.908 18.166 3.3871 55 31 2 0 0 0 0.82752 1 606 606 7.9102 0 1 54448 + 51881 21311 32414 32431 59690 59690 0.12182923719592509 VTQPVVLI 8 Unmodified _VTQPVVLI_ 0 0 0 REV__L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|1|1|sense REV__L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 434.77972412109375 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 43.468 1 46.71 46.21 47.21 3.2419 0 0 0 0.40604 1 9022 9022 2.5775 0 1 + 51882 26357 32415 32432 59691 59691 0.10388447425293634 VTQPVVLI 8 Unmodified _VTQPVVLI_ 0 0 0 REV__L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|1|1|sense REV__L1MB8_dup12446|chr13:72989133-72989806:+|1.5267631625239386|0.0097811032276158|7.29|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 434.7796936035156 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 35.437 1 39.125 38.625 39.625 3.6877 0 0 0 0.40604 1 5839 5839 2.5775 0 1 + 51883 26357 32415 32432 59692 59692 0.10388447425293634 VTQRKISH 8 Unmodified _VTQRKISH_ 0 0 0 L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|194|3|sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|194|3|sense L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|194|3|sense MSMS UPN48_class_I_Rep_1 5 484.7877197265625 2 484.785433 967.556313 NaN NaN NaN NaN NaN NaN NaN 39.757 1 43.262 42.762 43.762 3.5048 0 0 0 0.40472 1 7058 7058 4.3292 0 1 51884 15003 32416 32433 59693 59693 0.07123698257237265 VTQYLRNAV 9 Unmodified _VTQYLRNAV_ 0 0 0 REV__nc|ENSG00000292339|O95671-2|ASMTL REV__nc|ENSG00000292339|O95671-2|ASMTL MULTI-MSMS UPN46_class_I_Rep_3 1 532.2982177734375 2 532.298373 1062.58219 0.028732 1.5294E-05 -0.24349 -0.00012961 -0.21475 -0.00011431 532.2980842082846 27.682 0.6404 27.682 27.506 28.147 0 80 51 2 0 0 0 0.46434 1 4256 4256 4.3292 0 1 88357 + 51885 32136 32417 32434 59694 59694 0.053405477088290354 VTRAARTW 8 Unmodified _VTRAARTW_ 0 0 0 MER45A_dup2691|chr15:68793724-68793863:-|1.2008603294672118|0.1173170806593376|3.36|151.0|1|1|sense MER45A_dup2691|chr15:68793724-68793863:-|1.2008603294672118|0.1173170806593376|3.36|151.0|1|1|sense MER45A_dup2691|chr15:68793724-68793863:-|1.2008603294672118|0.1173170806593376|3.36|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 480.7705383300781 2 480.772326 959.530098 NaN NaN NaN NaN NaN NaN NaN 19.743 1 23.393 22.893 23.893 3.6497 0 0 0 0.40625 1 1564 1564 2.3027 0 1 51886 15993 32418 32435 59695 59695 0.04871429085733325 VTREKVLE 8 Unmodified _VTREKVLE_ 0 0 0 nc|ENSG00000137747|Q9BYE2-4|TMPRSS13;nc|ENSG00000137747|Q9BYE2-3|TMPRSS13;nc|ENSG00000137747|Q9BYE2-2|TMPRSS13;ENSG00000137747|ENST00000524993|TMPRSS13;nc|ENSG00000137747|Q9BYE2|TMPRSS13 nc|ENSG00000137747|Q9BYE2-4|TMPRSS13 nc|ENSG00000137747|Q9BYE2-4|TMPRSS13 MULTI-SECPEP UPN47_class_I_Rep_2 3 486.75885009765625 2 487.287474 972.560395 -0.14271 -6.9539E-05 0.11918 5.8075E-05 -0.023527 -1.1464E-05 487.28746243327913 31.958 0.99833 35.428 34.949 35.947 3.4691 168 73 3 0 0 0 0.72333 1 5410 5410 10.074 0 1 374750 51887 3035 32419 32436 59696 59696 0.07301742960282809 VTRHPAAG 8 Unmodified _VTRHPAAG_ 0 0 0 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 MULTI-MSMS UPN47_class_I_Rep_3 4 404.73077392578125 2 404.724844 807.435135 -0.68016 -0.00027528 -1.3356 -0.00054056 -2.0158 -0.00081584 404.7243551768678 65.989 0.23287 69.174 69.073 69.306 3.1853 17 12 2 0 0 0 0.82752 1 15905 15905 7.9102 0 1 39307 51888 4970 32420 32437 59697 59697 0.023714956145568067 VTRHPAAG 8 Unmodified _VTRHPAAG_ 0 0 0 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 MULTI-MATCH UPN47_class_I_Rep_1 2 2 404.724844 807.435135 -0.055253 -2.2362E-05 -2.2024 -0.00089137 -2.2577 -0.00091373 404.72400826070987 65.853 0.40495 69.211 68.89 69.295 3.3576 0.018111 -0.0002919 NaN 7.9102 26 22 2 NaN NaN NaN NaN 0 NaN NaN 0 47957 51889 4970 32420 32437 0.023714956145568067 VTRIRLHH 8 Unmodified _VTRIRLHH_ 0 0 0 REV__L1MC5a_dup10454|chr10:27124004-27124404:+|1.2728724759542318|0.3906813241407983|1.7|151.0|20|1|anti-sense REV__L1MC5a_dup10454|chr10:27124004-27124404:+|1.2728724759542318|0.3906813241407983|1.7|151.0|20|1|anti-sense MSMS UPN46_class_I_Rep_3 1 516.3146362304688 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 96.461 1 96.461 95.961 96.961 0 0 0 0 0.40798 1 23455 23455 0 0 1 + 51890 27106 32421 32438 59698 59698 0.10074799622339015 VTRKFFGK 8 Unmodified _VTRKFFGK_ 0 0 0 REV__nc|ENSG00000119508|Q92570-2|NR4A3;REV__nc|ENSG00000123358|P22736-2|NR4A1 REV__nc|ENSG00000123358|P22736-2|NR4A1 MSMS UPN46_class_I_Rep_3 1 491.90313720703125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 67.139 1 67.139 66.639 67.639 0 0 0 0 0.40746 1 15266 15266 0.69038 0 1 + 51891 18674;18778 32422 32439 59699 59699 0.08446074267999393 VTRKFFGK 8 Unmodified _VTRKFFGK_ 0 0 0 REV__nc|ENSG00000119508|Q92570-2|NR4A3;REV__nc|ENSG00000123358|P22736-2|NR4A1 REV__nc|ENSG00000123358|P22736-2|NR4A1 MULTI-SECPEP UPN46_class_I_Rep_3 1 492.4657897949219 2 491.795269 981.575986 0.21375 0.00010512 1.4338 0.00070516 1.6476 0.00081028 491.7959009817115 57.268 0.37705 57.268 57.194 57.571 0 53 38 2 0 0 0 0.72333 1 12610 12610 2.3027 0 1 127880 + 51892 18674;18778 32422 32439 59700 59700 0.08446074267999393 VTRKFFGK 8 Unmodified _VTRKFFGK_ 0 0 0 REV__nc|ENSG00000119508|Q92570-2|NR4A3;REV__nc|ENSG00000123358|P22736-2|NR4A1 REV__nc|ENSG00000123358|P22736-2|NR4A1 MULTI-MSMS UPN47_class_I_Rep_3 4 492.3017272949219 2 491.795269 981.575986 0.050371 2.4772E-05 4.3474 0.002138 4.3978 0.0021628 491.7958211353027 46.138 0.96099 49.382 48.945 49.906 3.2441 77 59 2 0 0 0 0.82752 2 9829 9829;9872 2.3027 0 1 95988 + 51893 18674;18778 32422 32439 59701;59702 59701 0.08446074267999393 VTRKGVVF 8 Unmodified _VTRKGVVF_ 0 0 0 REV__ENSG00000180720|ENST00000682254|CHRM4 REV__ENSG00000180720|ENST00000682254|CHRM4 MULTI-MSMS UPN47_class_I_Rep_2 3 453.2819519042969 2 453.281995 904.549437 -0.10842 -4.9144E-05 0.59744 0.00027081 0.48902 0.00022166 453.28192465459136 50.618 0.72346 53.957 53.476 54.2 3.3386 68 36 2 0 0 0 0.82752 1 11134 11134 2.5775 0 1 124010 + 51894 20712 32423 32440 59703 59703 0.09334385376666887 VTRLFPFF 8 Unmodified _VTRLFPFF_ 0 0 0 REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.7921142578125 2 513.792195 1025.56984 0.36763 0.00018889 -0.18448 -9.4787E-05 0.18315 9.4101E-05 513.7918457788738 75.434 0.37228 78.999 78.828 79.2 3.5659 51 39 2 0 0 0 0.82752 1 17727 17727 11.64 0 1 108640 + 51895 28759 32424 32441 59704 59704 0.05807556036438655 VTRLFPFF 8 Unmodified _VTRLFPFF_ 0 0 0 REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 513.792195 1025.56984 0.27537 0.00014148 0.015116 7.7663E-06 0.29049 0.00014925 513.7922139255148 75.494 0.18686 78.993 78.865 79.052 3.4996 0.025739 0.00013414 NaN 11.64 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 76208 + 51896 28759 32424 32441 0.05807556036438655 VTRLFPFF 8 Unmodified _VTRLFPFF_ 0 0 0 REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 513.792195 1025.56984 0.32607 0.00016753 -0.024842 -1.2764E-05 0.30123 0.00015477 513.7921999333785 75.32 0.065315 78.91 78.872 78.938 3.59 -0.057656 9.3085E-05 NaN 11.64 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 53622 + 51897 28759 32424 32441 0.05807556036438655 VTRLFPFF 8 Unmodified _VTRLFPFF_ 0 0 0 REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense REV__L1MEg_dup5135|chr5:131523415-131524492:+|1.8122852018987248|0.01350957118176|7.07|151.0|51|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 513.792195 1025.56984 0.36763 0.00018889 -0.18448 -9.4787E-05 0.18315 9.4101E-05 513.7918457788738 75.434 0.37228 78.999 78.828 79.2 3.5659 0.031917 -7.0961E-05 NaN 11.64 51 39 2 NaN NaN NaN NaN 0 NaN NaN 0 108640 + 51898 28759 32424 32441 0.05807556036438655 VTRMLNPL 8 Unmodified _VTRMLNPL_ 0 0 0 ENSG00000177489|ENST00000320065|OR2G2 ENSG00000177489|ENST00000320065|OR2G2 ENSG00000177489|ENST00000320065|OR2G2 MULTI-MSMS UPN47_class_I_Rep_2 3 472.2726135253906 2 472.273312 942.532072 -0.30793 -0.00014543 -0.52631 -0.00024856 -0.83424 -0.00039399 472.2728836933115 14.492 0.63289 17.879 17.723 18.356 3.3871 178 76 4 0 0 0 0.82752 1 621 621 2.0598 0 1 292700 51899 4795 32425 32442 59705 59705 0.05850721779336254 VTRNKPRRP 9 Unmodified _VTRNKPRRP_ 0 0 0 REV__L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|33|2|sense REV__L1PA13_dup779|chr2:99626575-99628545:-|2.885776010046481|0.064560379331638|5.48|151.0|33|2|sense MSMS UPN47_class_I_Rep_1 2 562.3436889648438 2 562.343981 1122.67341 NaN NaN NaN NaN NaN NaN NaN 57.297 1 60.734 60.234 61.234 3.437 0 0 0 0.40038 1 13149 13149 0.6015 0 1 + 51900 29127 32426 32443 59706 59706 0.11697856196815337 VTRPKAVV 8 Unmodified _VTRPKAVV_ 0 0 0 nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1 nc|ENSG00000118432|P21554-2|CNR1 nc|ENSG00000118432|P21554-2|CNR1 MULTI-SECPEP UPN47_class_I_Rep_2 3 435.7557067871094 2 435.281995 868.549437 -0.76252 -0.00033191 -0.50661 -0.00022052 -1.2691 -0.00055243 435.2819370327818 31.789 0.37307 35.258 35.158 35.531 3.4691 34 26 2 0 0 0 0.72333 1 5493 5493 2.5775 0 1 62905 51901 2248 32427 32444 59707 59707 0.10990385376658196 VTRQLTTR 8 Unmodified _VTRQLTTR_ 0 0 0 MLT1G1_dup607|chr3:17730256-17730736:+|1.0648980385685625|0.0389086847188012|4.77|151.0|11|2|sense MLT1G1_dup607|chr3:17730256-17730736:+|1.0648980385685625|0.0389086847188012|4.77|151.0|11|2|sense MLT1G1_dup607|chr3:17730256-17730736:+|1.0648980385685625|0.0389086847188012|4.77|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 487.79052734375 2 487.790715 973.566878 NaN NaN NaN NaN NaN NaN NaN 86.377 1 89.99 89.49 90.49 3.613 0 0 0 0.40798 1 20696 20696 0 0 1 51902 16415 32428 32445 59708 59708 0.07903680911636002 VTRRFGIP 8 Unmodified _VTRRFGIP_ 0 0 0 nc|ENSG00000241935|Q86XE5-3|HOGA1;ENSG00000241935|ENST00000370646|HOGA1 nc|ENSG00000241935|Q86XE5-3|HOGA1 nc|ENSG00000241935|Q86XE5-3|HOGA1 MSMS UPN48_class_I_Rep_1 5 473.2845458984375 2 473.285069 944.555585 NaN NaN NaN NaN NaN NaN NaN 43.109 1 46.62 46.12 47.12 3.5103 0 0 0 0.40625 1 8053 8053 2.3027 0 1 51903 5710 32429 32446 59709 59709 0.08108903608183482 VTRRFIVV 8 Unmodified _VTRRFIVV_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MSMS UPN47_class_I_Rep_3 4 495.31585693359375 2 495.316369 988.618185 NaN NaN NaN NaN NaN NaN NaN 112.05 1 115.57 115.07 116.07 3.5207 0 0 0 0.40738 1 27514 27514 0.79363 0 1 51904 1343 32430 32447 59710 59710 0.12342049676362876 VTRRGKSAP 9 Unmodified _VTRRGKSAP_ 0 0 0 REV__nc|ENSG00000143776|Q5VT25|CDC42BPA REV__nc|ENSG00000143776|Q5VT25|CDC42BPA MSMS UPN46_class_I_Rep_3 1 486.2920227050781 2 486.290882 970.567212 NaN NaN NaN NaN NaN NaN NaN 26.802 1 26.802 26.302 27.302 0 0 0 0 0.38299 1 3888 3888 4.756 0 1 + 51905 32001 32431 32448 59711 59711 0.08075100631515397 VTRRYAFL 8 Unmodified _VTRRYAFL_ 0 0 0 HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|82|2|anti-sense HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|82|2|anti-sense HERV17-int_dup339|chr5:18742681-18744759:-|1.1496492837065055|0.0476493212640706|4.59|150.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 513.2969970703125 2 513.298176 1024.5818 NaN NaN NaN NaN NaN NaN NaN 21.603 1 24.952 24.452 25.452 3.3496 0 0 0 0.40738 1 2444 2444 0.79363 0 1 51906 8009 32432 32449 59712 59712 0.07049172779647961 VTRSGILKTLI 11 Unmodified _VTRSGILKTLI_ 0 0 0 L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|89|2|anti-sense L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|89|2|anti-sense L1ME3_dup321|chr1:108789977-108791651:-|2.13575769781457|0.2672021637114732|3.0|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_2 6 600.8875122070312 2 600.887355 1199.76016 NaN NaN NaN NaN NaN NaN NaN 20.948 1 24.596 24.096 25.096 3.648 0 0 0 0.38417 1 1893 1893 0 0 1 51907 12589 32433 32450 59713 59713 0.16826797908061053 VTRVEDYL 8 Unmodified _VTRVEDYL_ 0 0 0 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 MULTI-MSMS UPN47_class_I_Rep_1 2 497.7634582519531 2 497.763832 993.513111 0.073338 3.6505E-05 -0.11784 -5.8654E-05 -0.044497 -2.2149E-05 497.7636405042007 51.812 0.63171 55.406 55.066 55.698 3.5932 75 37 3 0 0 0 0.82752 2 11562 11541;11562 11.64 0 1 142690 + 51908 18168 32434 32451 59714;59715 59715 0.01609463689283075 VTRVFHPL 8 Unmodified _VTRVFHPL_ 0 0 0 REV__nc|ENSG00000172409|Q92989-2|CLP1 REV__nc|ENSG00000172409|Q92989-2|CLP1 MSMS UPN46_class_I_Rep_3 1 484.8032531738281 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 41.419 1 41.419 40.919 41.919 0 0 0 0 0.39819 1 8119 8119 8.5933 0 1 + 51909 20447 32435 32452 59716 59716 0.07525787750932977 VTRVGTLIL 9 Unmodified _VTRVGTLIL_ 0 0 0 L1M3de_dup155|chr6:118869421-118871611:+|1.4781474985084055|0.0160360641098552|6.53|151.0|105|2|anti-sense L1M3de_dup155|chr6:118869421-118871611:+|1.4781474985084055|0.0160360641098552|6.53|151.0|105|2|anti-sense L1M3de_dup155|chr6:118869421-118871611:+|1.4781474985084055|0.0160360641098552|6.53|151.0|105|2|anti-sense MSMS UPN48_class_I_Rep_1 5 486.31689453125 2 486.316035 970.617516 NaN NaN NaN NaN NaN NaN NaN 68.694 1 72.148 71.648 72.648 3.4536 0 0 0 0.4029 1 15880 15880 0 0 1 51910 8793 32436 32453 59717 59717 0.13103210236681662 VTRWLALV 8 Unmodified _VTRWLALV_ 0 0 0 REV__L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|22|2|sense REV__L1MA3_dup5358|chrX:81317292-81318730:-|1.0319174586842903|0.0105232692461807|6.62|150.0|22|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 479.28656005859375 2 479.297645 956.580737 -0.38335 -0.00018374 -2.6732 -0.0012813 -3.0565 -0.001465 479.29585570403384 13.586 0.032441 17.043 17.015 17.047 3.457 5 3 2 0 0 0 0.72333 1 362 362 0.79363 0 1 10860 + 51911 25047 32437 32454 59718 59718 0.1007095841073351 VTSAIVVIT 9 Unmodified _VTSAIVVIT_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS UPN47_class_I_Rep_1 2 451.78131103515625 2 451.781493 901.548434 0.046026 2.0794E-05 -0.11886 -5.37E-05 -0.072837 -3.2906E-05 451.78137978804557 71.242 0.13474 74.617 74.577 74.712 3.3751 14 10 2 0 0 0 0.21527 2 17362 17354;17362 19.257 0 1 95649 51912 2369 32438 32455 59719;59720 59720 0.09372126217078858 VTSAIVVIT 9 Unmodified _VTSAIVVIT_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MSMS UPN47_class_I_Rep_3 4 451.78125 2 451.781493 901.548434 NaN NaN NaN NaN NaN NaN NaN 71.326 1 74.544 74.044 75.044 3.2188 0 0 0 0.2408 1 17494 17494 13.906 0 1 51913 2369 32438 32455 59721 59721 0.09372126217078858 VTSAIVVIT 9 Unmodified _VTSAIVVIT_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MSMS UPN47_class_I_Rep_3 4 451.7815246582031 2 451.781493 901.548434 NaN NaN NaN NaN NaN NaN NaN 71.505 1 74.724 74.224 75.224 3.2188 0 0 0 0.31276 1 17548 17548 10.074 0 1 51914 2369 32438 32455 59722 59722 0.09372126217078858 VTSALNRVT 9 Unmodified _VTSALNRVT_ 0 0 0 REV__L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|182|2|anti-sense REV__L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|182|2|anti-sense MSMS UPN47_class_I_Rep_3 4 480.7766418457031 2 480.777274 959.539994 NaN NaN NaN NaN NaN NaN NaN 35.679 1 38.933 38.433 39.433 3.2547 0 0 0 0.31276 1 6637 6637 10.074 0 1 + 51915 26720 32439 32456 59723 59723 0.058605723004689025 VTSDAETARKT 11 Unmodified _VTSDAETARKT_ 0 0 0 REV__ENST00000475841.2_1_12:132611152-132611335:+|nuORF REV__ENST00000475841.2_1_12:132611152-132611335:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 589.8027954101562 2 589.804217 1177.59388 -0.43845 -0.0002586 -0.011717 -6.9106E-06 -0.45016 -0.00026551 589.8039529770489 13.074 0.10043 16.448 16.406 16.507 3.3734 14 10 2 0 0 0 0.68583 1 220 220 0 0 1 22256 + 51916 22537 32440 32457 59724 59724 0.012186999415007449 VTSHTRALPA 10 Unmodified _VTSHTRALPA_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MSMS UPN48_class_I_Rep_3 7 526.7764892578125 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 20.081 1 23.703 23.203 24.203 3.6215 0 0 0 0.53105 1 1641 1641 1.3295 0.13619 1 + 51917 20726 32441 32458 59725 59725 0.05371663566097595 VTSLPHMCA 9 Unmodified _VTSLPHMCA_ 0 0 0 nc|ENSG00000185973|Q9NVH6-3|TMLHE nc|ENSG00000185973|Q9NVH6-3|TMLHE nc|ENSG00000185973|Q9NVH6-3|TMLHE MSMS UPN47_class_I_Rep_2 3 479.72625732421875 2 479.72788 957.441208 NaN NaN NaN NaN NaN NaN NaN 19.237 1 22.634 22.134 23.134 3.3963 0 0 0 0.39428 1 1776 1776 2.0598 0 1 51918 16780 32442 32459 59726 59726 -0.039214902604385315 VTSLTYKR 8 Unmodified _VTSLTYKR_ 0 0 0 REV__L1ME4a_dup21758|chr10:74863062-74863728:-|1.3739206071422565|0.0103434417422912|7.05|150.0|14|2|sense REV__L1ME4a_dup21758|chr10:74863062-74863728:-|1.3739206071422565|0.0103434417422912|7.05|150.0|14|2|sense MSMS UPN47_class_I_Rep_2 3 484.28240966796875 2 484.282192 966.549831 NaN NaN NaN NaN NaN NaN NaN 52.819 1 56.145 55.645 56.645 3.3266 0 0 0 0.40746 1 11809 11809 0.69038 0 1 + 51919 28219 32443 32460 59727 59727 0.06521760305849966 VTSPLSSNLY 10 Unmodified _VTSPLSSNLY_ 0 0 0 REV__Charlie19a_dup683|chr7:139844307-139844690:-|1.816684674273148|0.0061220308813664|8.21|151.0|14|1|anti-sense REV__Charlie19a_dup683|chr7:139844307-139844690:-|1.816684674273148|0.0061220308813664|8.21|151.0|14|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 540.7821655273438 2 540.782222 1079.54989 0.01599 8.6473E-06 -0.34829 -0.00018835 -0.3323 -0.0001797 540.7819158366242 41.765 0.73272 45.13 44.88 45.613 3.3655 82 55 2 0 0 0 0.4561 1 8442 8442 15.248 2.206 1 154540 + 51920 17294 32444 32461 59728 59728 0.013297155152031337 VTSQQKNMK 9 Unmodified _VTSQQKNMK_ 0 0 0 L1M8_dup639|chr5:179883159-179884013:-|1.5732190041467229|0.2263046684928081|2.8|151.0|4|1|sense L1M8_dup639|chr5:179883159-179884013:-|1.5732190041467229|0.2263046684928081|2.8|151.0|4|1|sense L1M8_dup639|chr5:179883159-179884013:-|1.5732190041467229|0.2263046684928081|2.8|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 532.2904052734375 2 532.281866 1062.54918 NaN NaN NaN NaN NaN NaN NaN 46.157 1 49.794 49.294 50.294 3.6369 0 0 0 0.29868 1 8919 8919 10.824 0.75 1 51921 9248 32445 32462 59729 59729 0.02040597594486826 VTSRGLQL 8 Unmodified _VTSRGLQL_ 0 0 0 nc|ENSG00000092203|O94842-3|TOX4;nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4 nc|ENSG00000092203|O94842-3|TOX4 nc|ENSG00000092203|O94842-3|TOX4 MULTI-MSMS UPN47_class_I_Rep_3 4 437.2609558105469 2 437.261259 872.507966 -1.1596 -0.00050703 0.14772 6.459E-05 -1.0119 -0.00044244 437.2613357439721 20.12 0.75989 23.471 23.103 23.862 3.3514 104 70 2 0 0 0 0.82752 1 1991 1991 2.0598 0 1 50472 51922 1390 32446 32463 59730 59730 0.0666120461734181 VTSSGSLLLI 10 Unmodified _VTSSGSLLLI_ 0 0 0 Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|63|1|anti-sense Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|63|1|anti-sense Tigger1_dup9496|chr13:37033798-37035524:+|1.0911925073310131|0.1489397613226802|2.87|151.0|63|1|anti-sense MSMS UPN46_class_I_Rep_3 1 495.2975158691406 2 495.297507 988.580462 NaN NaN NaN NaN NaN NaN NaN 53.45 1 53.45 52.95 53.95 0 0 0 0 0.53105 1 11500 11500 37.974 0 1 51923 33214 32447 32464 59731 59731 0.08571493900251426 VTSSWISIS 9 Unmodified _VTSSWISIS_ 0 0 0 REV__L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|56|1|anti-sense REV__L1MD1_dup5225|chr13:49756578-49757872:+|1.4146985868097608|0.0121941041801744|6.86|151.0|56|1|anti-sense MSMS UPN47_class_I_Rep_3 4 490.259033203125 2 490.258382 978.502212 NaN NaN NaN NaN NaN NaN NaN 59.291 1 62.456 61.956 62.956 3.1651 0 0 0 0.36505 1 13842 13842 7.2892 0 1 + 51924 27355 32448 32465 59732 59732 0.012100613150096251 VTSVVRPGSL 10 Unmodified _VTSVVRPGSL_ 0 0 0 REV__L1M3a_dup400|chr16:20706968-20707998:+|1.911578190150468|0.1158343311987495|4.04|148.0|34|1|anti-sense REV__L1M3a_dup400|chr16:20706968-20707998:+|1.911578190150468|0.1158343311987495|4.04|148.0|34|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 508.3023986816406 2 507.800749 1013.58694 0.19963 0.00010137 -0.4637 -0.00023547 -0.26407 -0.00013409 507.8004406034325 56.345 0.97628 59.802 59.236 60.212 3.4572 137 58 3 0 0 0 0.52083 1 12725 12725 9.3831 0 1 815940 + 51925 24312 32449 32466 59733 59733 0.0806943185162936 VTSYDITH 8 Unmodified _VTSYDITH_ 0 0 0 REV__Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|11|1|sense REV__Tigger1_dup2550|chr3:131459436-131460491:+|1.2977704223034174|0.4044746456324845|1.68|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 468.2269287109375 2 468.227082 934.439611 NaN NaN NaN NaN NaN NaN NaN 73.259 1 76.741 76.241 77.241 3.4812 0 0 0 0.4044 1 17252 17252 4.756 0 1 + 51926 32406 32450 32467 59734 59734 -0.03023084753203875 VTSYYEAKF 9 Unmodified _VTSYYEAKF_ 0 0 0 REV__L1MB3_dup3834|chr4:1894789-1895281:-|1.8268066397302456|0.0149866326389545|6.93|151.0|28|2|anti-sense REV__L1MB3_dup3834|chr4:1894789-1895281:-|1.8268066397302456|0.0149866326389545|6.93|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_1 5 554.7523193359375 2 554.27149 1106.52843 NaN NaN NaN NaN NaN NaN NaN 85.846 1 89.451 88.951 89.951 3.6059 0 0 0 0.35339 1 20548 20548 7.9102 3.1541 1 + 51927 25884 32451 32468 59735 59735 -0.020576695135332557 VTTEGRPPL 9 Unmodified _VTTEGRPPL_ 0 0 0 nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1 nc|ENSG00000114841|Q9P2D7-3|DNAH1 nc|ENSG00000114841|Q9P2D7-3|DNAH1 MULTI-MSMS UPN46_class_I_Rep_3 1 485.27178955078125 2 485.271824 968.529095 0.051787 2.5131E-05 -0.062631 -3.0393E-05 -0.010845 -5.2626E-06 485.2717651764246 31.414 0.54673 31.414 31.175 31.722 0 54 38 2 0 0 0 0.42249 1 5302 5302 6.7232 0 1 74981 51928 2093 32452 32469 59736 59736 0.0435716992617472 VTTGYHSSPYL 11 Unmodified _VTTGYHSSPYL_ 0 0 0 HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|249|3|anti-sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|249|3|anti-sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|249|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 612.7980346679688 2 612.798403 1223.58225 0.53597 0.00032844 -0.20075 -0.00012302 0.33522 0.00020542 612.7981535102911 51.737 0.92646 54.942 54.636 55.562 3.2055 111 52 3 0 0 0 0.65271 1 11462 11462 2.9952 0 1 211090 51929 8389 32453 32470 59737 59737 -0.020594970817910507 VTTIDPRW 8 Unmodified _VTTIDPRW_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MSMS UPN47_class_I_Rep_2 3 494.2663269042969 2 494.266542 986.51853 NaN NaN NaN NaN NaN NaN NaN 33.498 1 36.938 36.438 37.438 3.4398 0 0 0 0.40604 1 5942 5942 2.5775 0 1 51930 1037 32454 32471 59738 59738 0.024731872717552505 VTTKSWIL 8 Unmodified _VTTKSWIL_ 0 0 0 REV__ENSG00000143924.19,EML4,chr2,+,I21.1,42317525,42319534|27|6.36|1|intron REV__ENSG00000143924.19,EML4,chr2,+,I21.1,42317525,42319534|27|6.36|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 474.28216552734375 2 474.28166 946.548768 -0.18284 -8.672E-05 1.7218 0.0008166 1.5389 0.00072988 474.2823263635259 22.156 0.12923 22.156 22.128 22.258 0 22 12 3 0 0 0 0.82752 1 2591 2591 0.79363 0 1 213210 + 51931 19467 32455 32472 59739 59739 0.07335545936962262 VTTKSWIL 8 Unmodified _VTTKSWIL_ 0 0 0 REV__ENSG00000143924.19,EML4,chr2,+,I21.1,42317525,42319534|27|6.36|1|intron REV__ENSG00000143924.19,EML4,chr2,+,I21.1,42317525,42319534|27|6.36|1|intron MSMS UPN46_class_I_Rep_3 1 474.2822570800781 2 474.28166 946.548768 NaN NaN NaN NaN NaN NaN NaN 41.37 1 41.37 40.87 41.87 0 0 0 0 0.40472 1 8104 8104 4.3292 0 1 + 51932 19467 32455 32472 59740 59740 0.07335545936962262 VTTLFLYL 8 Unmodified _VTTLFLYL_ 0 0 0 REV__ENST00000565336.1_1_1:94313579-94313903:+|nuORF REV__ENST00000565336.1_1_1:94313579-94313903:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.2852478027344 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 35.97 1 39.658 39.158 40.158 3.6877 0 0 0 0.40738 1 5997 5997 0.79363 0 1 + 51933 23059 32456 32473 59741 59741 0.0727331422244788 VTTLQVRQT 9 Unmodified _VTTLQVRQT_ 0 0 0 REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3034057617188 2 523.303655 1044.59276 0.32586 0.00017053 -0.27364 -0.00014319 0.052227 2.7331E-05 523.303344872277 84.256 0.36958 84.256 84.183 84.553 0 61 32 3 0 0 0 0.47493 1 20082 20082 3.2813 0 1 700450 + 51934 25116 32457 32474 59742 59742 0.07224530363282611 VTTLQVRQT 9 Unmodified _VTTLQVRQT_ 0 0 0 REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 523.3035888671875 2 523.303655 1044.59276 0.36077 0.00018879 -0.36018 -0.00018849 0.00058247 3.0481E-07 523.3033199135757 80.002 1.3903 83.311 82.157 83.547 3.309 245 141 3 0 0 0 0.43153 1 19892 19892 6.2058 0 1 459950 + 51935 25116 32457 32474 59743 59743 0.07224530363282611 VTTLQVRQT 9 Unmodified _VTTLQVRQT_ 0 0 0 REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 523.303655 1044.59276 0.32268 0.00016886 -0.29024 -0.00015188 0.032433 1.6972E-05 523.3033945331226 83.224 0.19521 83.224 83.154 83.349 0 -0.038082 4.7222E-05 NaN 6.2058 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 979280 + 51936 25116 32457 32474 0.07224530363282611 VTTLQVRQT 9 Unmodified _VTTLQVRQT_ 0 0 0 REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense REV__L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|5|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 523.303655 1044.59276 0.36331 0.00019012 -0.45136 -0.0002362 -0.088047 -4.6076E-05 523.303182617332 81.121 0.42487 84.444 84.355 84.779 3.3231 0.09435 -0.00015907 NaN 3.2813 73 51 2 NaN NaN NaN NaN 0 NaN NaN 0 129490 + 51937 25116 32457 32474 0.07224530363282611 VTTLSPVRP 9 Unmodified _VTTLSPVRP_ 0 0 0 REV__ENSG00000237649|ENST00000428849|KIFC1 REV__ENSG00000237649|ENST00000428849|KIFC1 MSMS UPN46_class_I_Rep_3 1 485.2896423339844 2 485.290017 968.565481 NaN NaN NaN NaN NaN NaN NaN 44.083 1 44.083 43.583 44.583 0 0 0 0 0.39598 1 8855 8855 1.6526 0 1 + 51938 21318 32458 32475 59744 59744 0.07994046822898326 VTTRKGVSTL 10 Unmodified _VTTRKGVSTL_ 0 0 0 ENSG00000132975|ENST00000405846|GPR12 ENSG00000132975|ENST00000405846|GPR12 ENSG00000132975|ENST00000405846|GPR12 MSMS UPN46_class_I_Rep_3 1 531.3015747070312 2 531.319306 1060.62406 NaN NaN NaN NaN NaN NaN NaN 90.278 1 90.278 89.778 90.778 0 0 0 0 0.53105 1 21764 21764 0 0 1 51939 2786 32459 32476 59745 59745 0.09617103397386018 VTTSPAPDDG 10 Unmodified _VTTSPAPDDG_ 0 0 0 REV__L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|55|2|sense REV__L1MA6_dup1349|chr4:102704964-102709038:+|4.847897525887928|0.1151524513038451|5.4|151.0|55|2|sense MSMS UPN46_class_I_Rep_3 1 480.3019714355469 2 480.219454 958.424355 NaN NaN NaN NaN NaN NaN NaN 33.527 1 33.527 33.027 34.027 0 0 0 0 0.53105 1 5875 5875 1.6526 0.85899 1 + 51940 25432 32460 32477 59746 59746 -0.05651996341043741 VTTTHYTKF 9 Unmodified _VTTTHYTKF_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|53|2|sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|53|2|sense MSMS UPN48_class_I_Rep_2 6 549.2854614257812 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 39.488 1 43.217 42.717 43.717 3.7297 0 0 0 0.38478 1 7012 7012 4.3292 0 1 + 51941 24494 32461 32478 59747 59747 0.010894390976773138 VTTTHYTKF 9 Unmodified _VTTTHYTKF_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|53|2|sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|53|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2864379882812 2 549.284931 1096.55531 0.33904 0.00018623 0.60415 0.00033185 0.9432 0.00051808 549.2851607810657 38.971 0.28582 42.627 42.519 42.805 3.6557 47 27 2 0 0 0 0.41259 1 6765 6765 7.2892 0 1 83866 + 51942 24494 32461 32478 59748 59748 0.010894390976773138 VTTTHYTKF 9 Unmodified _VTTTHYTKF_ 0 0 0 REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|53|2|sense REV__L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|53|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.2867431640625 2 549.284931 1096.55531 0.34028 0.00018691 -0.14232 -7.8177E-05 0.19795 0.00010873 549.284841103378 39.337 0.59811 42.993 42.805 43.403 3.6557 74 53 2 0 0 0 0.46434 1 6915 6915 4.3292 0 1 105550 + 51943 24494 32461 32478 59749 59749 0.010894390976773138 VTTTKKTK 8 Unmodified _VTTTKKTK_ 0 0 0 L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 453.78558349609375 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 58.448 1 61.865 61.365 62.365 3.4171 0 0 0 0.40738 1 13497 13497 0.79363 0 1 51944 10234 32462 32479 59750 59750 0.09802644448620867 VTTTKKTK 8 Unmodified _VTTTKKTK_ 0 0 0 L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 453.78509521484375 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 57.313 1 60.481 59.981 60.981 3.1681 0 0 0 0.40738 1 13235 13235 0.79363 0 1 51945 10234 32462 32479 59751 59751 0.09802644448620867 VTTTKKTK 8 Unmodified _VTTTKKTK_ 0 0 0 L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense L1MB2_dup3694|chr7:128568769-128569832:-|2.1946077171624685|0.015030888359722|7.19|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 453.7851257324219 2 453.784567 905.554582 NaN NaN NaN NaN NaN NaN NaN 59.258 1 62.424 61.924 62.924 3.1651 0 0 0 0.40738 1 13832 13832 0.79363 0 1 51946 10234 32462 32479 59752 59752 0.09802644448620867 VTTTTILSLT 10 Unmodified _VTTTTILSLT_ 0 0 0 REV__L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|15|1|sense REV__L1MC2_dup1682|chr4:163530950-163533664:+|3.017075460616741|0.3945865719142076|2.93|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 525.3082275390625 2 525.308072 1048.60159 NaN NaN NaN NaN NaN NaN NaN 28.282 1 31.913 31.413 32.413 3.6311 0 0 0 0.53105 1 3875 3875 0 0 1 + 51947 26638 32463 32480 59753 59753 0.07923459209109751 VTTTTSKRLI 10 Unmodified _VTTTTSKRLI_ 0 0 0 REV__nc|ENSG00000184838|Q569H4-2|PRR16 REV__nc|ENSG00000184838|Q569H4-2|PRR16 MSMS UPN47_class_I_Rep_3 4 560.34033203125 2 560.340238 1118.66592 NaN NaN NaN NaN NaN NaN NaN 95.429 1 98.838 98.338 99.338 3.4095 0 0 0 0.53105 1 23722 23722 0 0 1 + 51948 20830 32464 32481 59754 59754 0.11133659085908221 VTTTTSKRLI 10 Unmodified _VTTTTSKRLI_ 0 0 0 REV__nc|ENSG00000184838|Q569H4-2|PRR16 REV__nc|ENSG00000184838|Q569H4-2|PRR16 MSMS UPN48_class_I_Rep_1 5 560.3405151367188 2 560.340238 1118.66592 NaN NaN NaN NaN NaN NaN NaN 95.47 1 99.087 98.587 99.587 3.6167 0 0 0 0.53105 1 22994 22994 0 0 1 + 51949 20830 32464 32481 59755 59755 0.11133659085908221 VTTVGFKG 8 Unmodified _VTTVGFKG_ 0 0 0 REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|189|1|anti-sense REV__HERVK22-int_dup191|chrX:63358486-63362967:-|1.4879095924336905|0.2755485557474278|2.43|150.0|189|1|anti-sense MSMS UPN47_class_I_Rep_3 4 404.730712890625 2 404.731803 807.449054 NaN NaN NaN NaN NaN NaN NaN 65.858 1 69.044 68.544 69.544 3.1853 0 0 0 0.39996 1 15845 15845 7.9102 0 1 + 51950 23810 32465 32482 59756 59756 0.037627283229994646 VTTVVNPKY 9 Unmodified _VTTVVNPKY_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS UPN48_class_I_Rep_1 5 510.78985595703125 2 510.78985 1019.56515 0.27756 0.00014178 0.34688 0.00017718 0.62444 0.00031896 510.7896378341449 35.152 0.84983 38.667 38.331 39.181 3.5144 142 86 3 0 0 0 0.0063213 2 5713 5713;5754 89.401 39.468 1 358630 51951 3558 32466 32483 59757;59758 59757 0.056146271030456774 VTTVVNPKY 9 Unmodified _VTTVVNPKY_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS UPN48_class_I_Rep_2 6 510.78973388671875 2 510.78985 1019.56515 0.30123 0.00015386 0.069298 3.5397E-05 0.37053 0.00018926 510.78963433746827 34.944 0.8138 38.617 38.327 39.141 3.6735 146 80 3 0 0 0 0.006828 4 5694 5670;5694;5730;5766 72.968 31.128 1 285470 51952 3558 32466 32483 59759;59760;59761;59762 59760 0.056146271030456774 VTTVVNPKY 9 Unmodified _VTTVVNPKY_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS UPN48_class_I_Rep_3 7 510.7897033691406 2 510.78985 1019.56515 0.19494 9.9572E-05 0.33322 0.00017021 0.52816 0.00026978 510.7896604718621 34.967 0.76151 38.639 38.298 39.06 3.6721 165 86 3 0 0 0 0.011285 4 5624 5591;5624;5659;5696 69.105 27.265 1 308930 51953 3558 32466 32483 59763;59764;59765;59766 59764 0.056146271030456774 VTTYMIYP 8 Unmodified _VTTYMIYP_ 0 0 0 REV__ENSG00000129636|ENST00000320640|ITFG1 REV__ENSG00000129636|ENST00000320640|ITFG1 MSMS UPN48_class_I_Rep_1 5 494.2461242675781 2 494.246429 986.478305 NaN NaN NaN NaN NaN NaN NaN 16.332 1 19.853 19.353 20.353 3.5217 0 0 0 0.40738 1 785 785 0.79363 0 1 + 51954 18926 32467 32484 59767 59767 -0.015474954430374055 VTVAIEKI 8 Unmodified _VTVAIEKI_ 0 0 0 REV__ENST00000406551.2_1_6:150201187-150201547:+|nuORF REV__ENST00000406551.2_1_6:150201187-150201547:+|nuORF MSMS UPN48_class_I_Rep_2 6 436.7747497558594 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 81.751 1 85.408 84.908 85.908 3.6567 0 0 0 0.39819 1 19411 19411 8.5933 0 1 + 51955 19148 32468 32485 59768 59768 0.0969614356264401 VTVAIEKI 8 Unmodified _VTVAIEKI_ 0 0 0 REV__ENST00000406551.2_1_6:150201187-150201547:+|nuORF REV__ENST00000406551.2_1_6:150201187-150201547:+|nuORF MSMS UPN48_class_I_Rep_2 6 436.77471923828125 2 436.776211 871.537869 NaN NaN NaN NaN NaN NaN NaN 81.875 1 85.532 85.032 86.032 3.6567 0 0 0 0.40604 1 19443 19443 2.5775 0 1 + 51956 19148 32468 32485 59769 59769 0.0969614356264401 VTVGIHVVFQI 11 Unmodified _VTVGIHVVFQI_ 0 0 0 L1M1_dup2576|chr4:139431150-139431941:-|1.3707641294178017|0.0565816282463525|4.6|151.0|28|1|anti-sense L1M1_dup2576|chr4:139431150-139431941:-|1.3707641294178017|0.0565816282463525|4.6|151.0|28|1|anti-sense L1M1_dup2576|chr4:139431150-139431941:-|1.3707641294178017|0.0565816282463525|4.6|151.0|28|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.3614501953125 2 606.360973 1210.70739 0.41771 0.00025328 0.24462 0.00014833 0.66233 0.00040161 606.360929065973 108.65 0.63891 112.28 112.17 112.81 3.6321 144 75 2 0 0 0 0.65271 1 26457 26457 2.9952 0 1 25210000 51957 8526 32469 32486 59770 59770 0.11046839845243994 VTVHVLSL 8 Unmodified _VTVHVLSL_ 0 0 0 REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|26|1|sense REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|26|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 434.7799072265625 2 434.268553 866.522553 0.089242 3.8755E-05 -0.81611 -0.00035441 -0.72687 -0.00031566 434.26793401905985 58.749 0.54476 62.272 62.01 62.554 3.5231 45 36 2 0 0 0 0.72333 1 12804 12804 18.135 0 1 138150 + 51958 23793 32470 32487 59771 59771 0.08395276765475046 VTVHVLSL 8 Unmodified _VTVHVLSL_ 0 0 0 REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|26|1|sense REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|26|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 434.268553 866.522553 0.073625 3.1973E-05 -0.7337 -0.00031862 -0.66007 -0.00028665 434.2681033216106 58.948 0.61357 62.435 62.063 62.676 3.487 0.087654 2.998E-05 NaN 18.135 50 39 2 NaN NaN NaN NaN 0 NaN NaN 0 191960 + 51959 23793 32470 32487 0.08395276765475046 VTVHVLSL 8 Unmodified _VTVHVLSL_ 0 0 0 REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|26|1|sense REV__HERVK-int_dup59|chr4:9122810-9130255:+|2.056655560858475|0.3712097721180007|2.47|151.0|26|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.268553 866.522553 0.18616 8.0845E-05 -0.74951 -0.00032549 -0.56335 -0.00024465 434.2680953451248 58.837 0.53647 62.336 62.105 62.642 3.4987 -0.0117 1.6241E-05 NaN 18.135 41 32 2 NaN NaN NaN NaN 0 NaN NaN 0 137380 + 51960 23793 32470 32487 0.08395276765475046 VTVIGVSPYL 10 Unmodified _VTVIGVSPYL_ 0 0 0 L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|27|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|27|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|27|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 524.3068237304688 2 524.307875 1046.6012 0.024915 1.3063E-05 -0.26327 -0.00013803 -0.23835 -0.00012497 524.3075691594958 69.587 1.0399 72.863 72.408 73.448 3.2761 242 86 4 0 0 0 0.40227 1 17010 17010 19.257 0 1 732220 51961 9538 32471 32488 59772 59772 0.07976084279880524 VTVIGVSPYL 10 Unmodified _VTVIGVSPYL_ 0 0 0 L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|27|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|27|1|sense L1MA3_dup374|chr1:174209268-174212300:+|1.1740433285785317|0.0112112434515061|6.71|151.0|27|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.3077392578125 2 524.307875 1046.6012 0.34374 0.00018023 -0.5192 -0.00027222 -0.17546 -9.1995E-05 524.3074973552075 69.668 0.6787 72.872 72.686 73.365 3.2044 144 52 4 0 0 0 0.47413 1 16960 16960 13.906 0 1 716990 51962 9538 32471 32488 59773 59773 0.07976084279880524 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 433.25482177734375 2 433.255111 864.49567 0.14136 6.1243E-05 -0.62389 -0.0002703 -0.48254 -0.00020906 433.2547127347521 100.77 0.35339 100.77 100.71 101.06 0 93 38 3 0 0 0 0.82752 2 24582 24582;24625 9.3474 0 1 1595900 51963 9636 32472 32489 59774;59775 59774 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MSMS UPN46_class_I_Rep_3 1 433.2547302246094 2 433.255111 864.49567 NaN NaN NaN NaN NaN NaN NaN 101.11 1 101.11 100.61 101.61 0 0 0 0 0.40404 1 24667 24667 5.2307 0 1 51964 9636 32472 32489 59776 59776 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 433.254638671875 2 433.255111 864.49567 0.14101 6.1094E-05 -1.0684 -0.00046291 -0.92744 -0.00040182 433.25527849508586 96.653 2.4054 100.43 99.918 102.32 3.7767 862 332 5 0 0 0 0.82752 10 23873 23873;23900;23929;23958;23990;24019;24078;24105;24133;24191 9.3474 0 1 84981000 51965 9636 32472 32489 59777;59778;59779;59780;59781;59782;59783;59784;59785;59786 59777 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 433.2546081542969 2 433.255111 864.49567 -0.20198 -8.7511E-05 -0.75843 -0.0003286 -0.96042 -0.00041611 433.2554485351868 96.769 2.1648 100.25 99.687 101.85 3.4791 1065 307 6 0 0 0 0.82752 12 23670 23670;23694;23721;23746;23773;23805;23832;23862;23887;23912;23940;23965 9.3474 0 1 84417000 51966 9636 32472 32489 59787;59788;59789;59790;59791;59792;59793;59794;59795;59796;59797;59798 59787 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 432.8851623535156 2 433.255111 864.49567 -0.20421 -8.8473E-05 -0.61446 -0.00026622 -0.81867 -0.00035469 433.2547574191372 98.432 0.19079 101.92 101.86 102.05 3.4897 38 26 2 0 0 0 0.72333 1 24143 24143 5.2307 0 1 128950 51967 9636 32472 32489 59799 59799 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 432.8851013183594 2 433.255111 864.49567 -0.20198 -8.7511E-05 -0.75843 -0.0003286 -0.96042 -0.00041611 433.2554485351868 96.769 2.1648 100.25 99.687 101.85 3.4791 1065 307 6 0 0 0 0.72333 1 23962 23962 9.3474 0 1 84417000 51968 9636 32472 32489 59800 59800 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 433.2547912597656 2 433.255111 864.49567 -0.36874 -0.00015976 -0.26347 -0.00011415 -0.6322 -0.00027391 433.2555095126378 96.87 1.9973 100.28 99.711 101.71 3.414 565 277 3 0 0 0 0.82752 11 23912 23912;23936;23962;23986;24018;24046;24076;24105;24136;24162;24197 9.3474 0 1 103660000 51969 9636 32472 32489 59801;59802;59803;59804;59805;59806;59807;59808;59809;59810;59811 59801 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 433.2547912597656 2 433.255111 864.49567 -0.36874 -0.00015976 -0.26347 -0.00011415 -0.6322 -0.00027391 433.2555095126378 96.87 1.9973 100.28 99.711 101.71 3.414 565 277 3 0 0 0 0.72333 1 24232 24232 9.3474 0 1 103660000 51970 9636 32472 32489 59812 59812 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 432.8851623535156 2 433.255111 864.49567 -0.36989 -0.00016026 -0.34036 -0.00014746 -0.71024 -0.00030772 433.2548942263599 98.476 0.38972 101.91 101.73 102.12 3.4328 83 54 2 0 0 0 0.72333 1 24361 24361 5.2307 0 1 181980 51971 9636 32472 32489 59813 59813 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 433.25469970703125 2 433.255111 864.49567 -0.06558 -2.8413E-05 -0.88611 -0.00038391 -0.95169 -0.00041233 433.25528121776193 96.59 1.9316 100.2 99.667 101.6 3.6124 727 240 5 0 0 0 0.82752 10 23162 23162;23195;23227;23262;23296;23335;23370;23405;23436;23483 9.3474 0 1 48889000 51972 9636 32472 32489 59814;59815;59816;59817;59818;59819;59820;59821;59822;59823 59814 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 432.8851623535156 2 433.255111 864.49567 -0.06558 -2.8413E-05 -0.88611 -0.00038391 -0.95169 -0.00041233 433.25528121776193 96.59 1.9316 100.2 99.667 101.6 3.6124 727 240 5 0 0 0 0.72333 1 23503 23503 9.3474 0 1 48889000 51973 9636 32472 32489 59824 59824 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 433.25482177734375 2 433.255111 864.49567 0.096361 4.1749E-05 -1.1116 -0.00048161 -1.0152 -0.00043986 433.2552097560207 96.391 1.8626 100.17 99.65 101.51 3.7804 702 251 5 0 0 0 0.82752 9 22804 22804;22833;22861;22891;22921;22952;22985;23016;23050 9.3474 0 1 52201000 51974 9636 32472 32489 59825;59826;59827;59828;59829;59830;59831;59832;59833 59825 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 432.88525390625 2 433.255111 864.49567 0.096361 4.1749E-05 -1.1116 -0.00048161 -1.0152 -0.00043986 433.2552097560207 96.391 1.8626 100.17 99.65 101.51 3.7804 702 251 5 0 0 0 0.72333 1 23097 23097 9.3474 0 1 52201000 51975 9636 32472 32489 59834 59834 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 433.2547607421875 2 433.255111 864.49567 0.134 5.8055E-05 -0.97835 -0.00042388 -0.84435 -0.00036582 433.2552323751117 96.419 1.8052 100.33 99.796 101.6 3.9084 744 248 5 0 0 0 0.82752 9 22759 22759;22786;22817;22845;22876;22907;22937;22967;22995 9.3474 0 1 55594000 51976 9636 32472 32489 59835;59836;59837;59838;59839;59840;59841;59842;59843 59835 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 433.255111 864.49567 0.1414 6.1261E-05 -0.92236 -0.00039962 -0.78096 -0.00033836 433.2546642199591 101.76 0.13084 101.76 101.66 101.79 0 -0.10249 -0.00039992 NaN 5.2307 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 48371 51977 9636 32472 32489 0.058001681542691585 VTVILAYS 8 Unmodified _VTVILAYS_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|132|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 433.255111 864.49567 0.13381 5.7973E-05 -0.78507 -0.00034014 -0.65127 -0.00028216 433.2546778862224 97.943 0.18079 101.85 101.76 101.94 3.9022 -0.012493 -0.00028096 NaN 5.2307 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 92925 51978 9636 32472 32489 0.058001681542691585 VTVLMTTLTK 10 Unmodified _VTVLMTTLTK_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS UPN48_class_I_Rep_2 6 554.1766967773438 2 553.828117 1105.64168 NaN NaN NaN NaN NaN NaN NaN 116.61 1 120.27 119.77 120.77 3.6607 0 0 0 0.53105 1 27936 27936 0 0 1 51979 5716 32473 32490 59844 59844 0.09308682608002528 VTVLVASY 8 Unmodified _VTVLVASY_ 0 0 0 REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|81|1|anti-sense REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|81|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 426.24713134765625 2 426.247286 850.48002 0.12072 5.1457E-05 -0.5704 -0.00024313 -0.44968 -0.00019167 426.24695904164633 97.089 0.47276 100.87 100.69 101.16 3.7767 83 63 2 0 0 0 0.82752 1 24086 24086 2.3027 0 1 206230 + 51980 25477 32474 32491 59845 59845 0.048798816372254805 VTVLVASY 8 Unmodified _VTVLVASY_ 0 0 0 REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|81|1|anti-sense REV__L1MA6_dup5242|chr21:6330311-6332017:-|1.276031872644363|0.024587959274427|5.7|146.0|81|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 426.2471008300781 2 426.247286 850.48002 -0.29996 -0.00012786 -0.05041 -2.1487E-05 -0.35037 -0.00014935 426.2472156549093 97.151 0.51282 100.63 100.46 100.98 3.4836 122 72 2 0 0 0 0.82752 2 23865 23865;23890 2.3027 0 1 220450 + 51981 25477 32474 32491 59846;59847 59846 0.048798816372254805 VTVMHRLL 8 Unmodified _VTVMHRLL_ 0 0 0 REV__L1MB7_dup1003|chr1:145777906-145778500:+|3.017884476121328|0.2035553984583198|3.89|151.0|45|2|anti-sense REV__L1MB7_dup1003|chr1:145777906-145778500:+|3.017884476121328|0.2035553984583198|3.89|151.0|45|2|anti-sense MSMS UPN47_class_I_Rep_2 3 484.78790283203125 2 484.78913 967.563706 NaN NaN NaN NaN NaN NaN NaN 38.792 1 42.171 41.671 42.671 3.3785 0 0 0 0.40625 1 7549 7549 2.3027 0 1 + 51982 26111 32475 32492 59848 59848 0.07862714533291637 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.7798767089844 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 38.951 1 38.951 38.451 39.451 0 0 0 0 0.40364 1 7453 7453 5.7604 0 1 + 51983 25555 32476 32493 59849 59849 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.7799987792969 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 46.467 1 46.467 45.967 46.967 0 0 0 0 0.40643 1 9530 9530 2.0598 0 1 + 51984 25555 32476 32493 59850 59850 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.7801208496094 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 49.444 1 49.444 48.944 49.944 0 0 0 0 0.40746 1 10380 10380 0.69038 0 1 + 51985 25555 32476 32493 59851 59851 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.7799377441406 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 52.036 1 52.036 51.536 52.536 0 0 0 0 0.40746 1 11100 11100 0.69038 0 1 + 51986 25555 32476 32493 59852 59852 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.7800598144531 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 53.98 1 53.98 53.48 54.48 0 0 0 0 0.40746 1 11655 11655 0.69038 0 1 + 51987 25555 32476 32493 59853 59853 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.78009033203125 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 60.127 1 60.127 59.627 60.627 0 0 0 0 0.40625 1 13325 13325 2.3027 0 1 + 51988 25555 32476 32493 59854 59854 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN47_class_I_Rep_1 2 434.7795715332031 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 52.545 1 56.104 55.604 56.604 3.5585 0 0 0 0.40746 1 11700 11700 0.69038 0 1 + 51989 25555 32476 32493 59855 59855 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN47_class_I_Rep_1 2 434.7796630859375 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 52.82 1 56.379 55.879 56.879 3.5585 0 0 0 0.40746 1 11783 11783 0.69038 0 1 + 51990 25555 32476 32493 59856 59856 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN47_class_I_Rep_3 4 434.78021240234375 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 36.392 1 39.647 39.147 40.147 3.2547 0 0 0 0.40746 1 6856 6856 0.69038 0 1 + 51991 25555 32476 32493 59857 59857 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN47_class_I_Rep_3 4 434.7798156738281 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 36.68 1 39.926 39.426 40.426 3.247 0 0 0 0.40604 1 6944 6944 2.5775 0 1 + 51992 25555 32476 32493 59858 59858 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN47_class_I_Rep_3 4 434.7798767089844 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 55.836 1 59.014 58.514 59.514 3.1779 0 0 0 0.40746 1 12791 12791 0.69038 0 1 + 51993 25555 32476 32493 59859 59859 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 434.7801513671875 2 434.778754 867.542954 -0.0024962 -1.0853E-06 2.1806 0.00094809 2.1781 0.00094701 434.77956513463687 68.24 0.11452 71.691 71.631 71.746 3.4517 14 10 2 0 0 0 0.82752 1 15739 15739 0.69038 0 1 46457 + 51994 25555 32476 32493 59860 59860 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 434.77984619140625 2 434.778754 867.542954 -0.02046 -8.8954E-06 3.0186 0.0013124 2.9981 0.0013035 434.7799248355836 74.498 0.11545 77.988 77.91 78.026 3.49 15 12 2 0 0 0 0.82752 1 17609 17609 0.69038 0 1 558240 + 51995 25555 32476 32493 59861 59861 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_1 5 434.7792053222656 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 73.903 1 77.384 76.884 77.884 3.4812 0 0 0 0.40746 1 17441 17441 0.69038 0 1 + 51996 25555 32476 32493 59862 59862 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_1 5 434.7805480957031 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 74.202 1 77.691 77.191 78.191 3.49 0 0 0 0.40746 1 17528 17528 0.69038 0 1 + 51997 25555 32476 32493 59863 59863 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_1 5 434.78009033203125 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 75.737 1 79.236 78.736 79.736 3.4996 0 0 0 0.40746 1 17961 17961 0.69038 0 1 + 51998 25555 32476 32493 59864 59864 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_1 5 434.77996826171875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 77.58 1 81.102 80.602 81.602 3.5221 0 0 0 0.40746 1 18470 18470 0.69038 0 1 + 51999 25555 32476 32493 59865 59865 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_2 6 434.7795104980469 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 35.638 1 39.326 38.826 39.826 3.6877 0 0 0 0.40746 1 5901 5901 0.69038 0 1 + 52000 25555 32476 32493 59866 59866 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_2 6 434.780029296875 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 75.232 1 78.822 78.322 79.322 3.59 0 0 0 0.40746 1 17734 17734 0.69038 0 1 + 52001 25555 32476 32493 59867 59867 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_3 7 434.7799072265625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 58.892 1 62.415 61.915 62.915 3.5231 0 0 0 0.40364 1 12804 12804 5.7604 0 1 + 52002 25555 32476 32493 59868 59868 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MSMS UPN48_class_I_Rep_3 7 434.77984619140625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 79.699 1 83.341 82.841 83.841 3.6423 0 0 0 0.40746 1 18902 18902 0.69038 0 1 + 52003 25555 32476 32493 59869 59869 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 434.778754 867.542954 -0.41246 -0.00017933 3.4334 0.0014928 3.0209 0.0013134 434.7801701670853 68.629 0.19321 71.826 71.792 71.985 3.1977 -0.036415 0.00039201 NaN 0.69038 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 35571 + 52004 25555 32476 32493 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 434.778754 867.542954 -0.02046 -8.8954E-06 3.0186 0.0013124 2.9981 0.0013035 434.7799248355836 74.498 0.11545 77.988 77.91 78.026 3.49 0.17302 9.2035E-05 NaN 0.69038 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 558240 + 52005 25555 32476 32493 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.778754 867.542954 0.094159 4.0938E-05 2.8917 0.0012573 2.9859 0.0012982 434.77984723056716 74.301 0.19319 77.879 77.742 77.935 3.5779 0.063472 -1.8294E-05 NaN 0.69038 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 139990 + 52006 25555 32476 32493 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 434.778754 867.542954 0.10694 4.6496E-05 3.026 0.0013156 3.1329 0.0013621 434.7799062414898 68.543 0.15176 72.051 71.953 72.105 3.5083 0.1885 3.7772E-05 NaN 0.69038 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 89864 + 52007 25555 32476 32493 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 434.778754 867.542954 0.18635 8.1019E-05 2.8965 0.0012593 3.0828 0.0013403 434.7799102421771 74.028 0.16737 77.579 77.534 77.701 3.5505 -0.23649 -1.4168E-05 NaN 0.69038 24 20 2 NaN NaN NaN NaN 0 NaN NaN 0 92578 + 52008 25555 32476 32493 0.10388447425293634 VTVPNLIL 8 Unmodified _VTVPNLIL_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|164|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 434.778754 867.542954 0.19683 8.5578E-05 3.3192 0.0014431 3.516 0.0015287 434.7800742947786 68.373 0.058609 71.882 71.835 71.893 3.5094 0.019569 0.0002927 NaN 0.69038 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 47119 + 52009 25555 32476 32493 0.10388447425293634 VTVPPGPSL 9 Unmodified _VTVPPGPSL_ 0 0 0 nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF nc|ENSG00000159352|P55036-2|PSMD4 nc|ENSG00000159352|P55036-2|PSMD4 MSMS UPN46_class_I_Rep_3 1 433.75262451171875 2 433.752736 865.490919 NaN NaN NaN NaN NaN NaN NaN 59.744 1 59.744 59.244 60.244 0 0 0 0 3.6055E-17 1 13226 13226 92.491 42.558 1 52010 3832 32477 32494 59870 59870 0.052792840115330364 VTVPPGPSL 9 Unmodified _VTVPPGPSL_ 0 0 0 nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF nc|ENSG00000159352|P55036-2|PSMD4 nc|ENSG00000159352|P55036-2|PSMD4 MSMS UPN46_class_I_Rep_3 1 433.7528076171875 2 433.752736 865.490919 NaN NaN NaN NaN NaN NaN NaN 59.948 1 59.948 59.448 60.448 0 0 0 0 0.072484 1 13278 13278 30.637 2.1497 1 52011 3832 32477 32494 59871 59871 0.052792840115330364 VTVPPGPSL 9 Unmodified _VTVPPGPSL_ 0 0 0 nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF nc|ENSG00000159352|P55036-2|PSMD4 nc|ENSG00000159352|P55036-2|PSMD4 MULTI-SECPEP UPN48_class_I_Rep_2 6 434.2830505371094 2 433.752736 865.490919 0.21991 9.5388E-05 -0.29191 -0.00012662 -0.071993 -3.1227E-05 433.7524362444384 55.447 1.3127 59.003 58.508 59.82 3.5559 117 85 2 0 0 0 0.12099 1 11959 11959 6.7232 0 1 125430 52012 3832 32477 32494 59872 59872 0.052792840115330364 VTVRSIIYY 9 Unmodified _VTVRSIIYY_ 0 0 0 ENST00000507290.5_1_5:1599907-1632780:-|nuORF;ENST00000507505.5_1_5:1599907-1634017:-|nuORF ENST00000507290.5_1_5:1599907-1632780:-|nuORF ENST00000507290.5_1_5:1599907-1632780:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 557.7926635742188 2 557.318774 1112.623 0.43357 0.00024164 -0.24505 -0.00013657 0.18853 0.00010507 557.3185221221878 65.687 0.44843 68.866 68.672 69.12 3.1795 40 26 3 0 0 0 0.11873 1 15834 15834 8.5933 0 1 134190 52013 7161 32478 32495 59873 59873 0.07118889028470221 VTVSPYALT 9 Unmodified _VTVSPYALT_ 0 0 0 nc|ENSG00000138336|Q8NFU7-3|TET1;ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-2|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 nc|ENSG00000138336|Q8NFU7-3|TET1 MULTI-SECPEP UPN47_class_I_Rep_2 3 475.2597351074219 2 475.7633 949.512048 -0.27363 -0.00013018 -2.7346 -0.001301 -3.0082 -0.0014312 475.76200872324455 39.887 0.11667 43.258 43.172 43.288 3.3712 12 8 2 0 0 0 0.12462 1 7861 7861 1.8442 0 1 40685 52014 3080 32479 32496 59874 59874 0.0352724932035926 VTVSSRSKK 9 Unmodified _VTVSSRSKK_ 0 0 0 L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|24|2|sense L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|24|2|sense L1MB7_dup5845|chr4:109488091-109489371:-|2.4873165739907863|0.0393459260551718|5.98|151.0|24|2|sense MSMS UPN47_class_I_Rep_1 2 496.3005676269531 2 496.298373 990.582193 NaN NaN NaN NaN NaN NaN NaN 69.342 1 72.709 72.209 73.209 3.3678 0 0 0 0.3967 1 16795 16795 1.4819 0 1 52015 10856 32480 32497 59875 59875 0.08652547708857128 VTVTKAVTTTT 11 Unmodified _VTVTKAVTTTT_ 0 0 0 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 REV__nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS UPN48_class_I_Rep_3 7 561.3240966796875 2 561.324254 1120.63395 NaN NaN NaN NaN NaN NaN NaN 82.499 1 86.206 85.706 86.706 3.7066 0 0 0 0.38417 1 19556 19556 0 0 1 + 52016 18822 32481 32498 59876 59876 0.0784624661205271 VTVWGHRL 8 Unmodified _VTVWGHRL_ 0 0 0 REV__ENST00000375279.6_1_20:32236165-32236447:+|nuORF REV__ENST00000375279.6_1_20:32236165-32236447:+|nuORF MSMS UPN47_class_I_Rep_3 4 484.2755126953125 2 484.277244 966.539935 NaN NaN NaN NaN NaN NaN NaN 77.178 1 80.447 79.947 80.947 3.269 0 0 0 0.4044 1 19209 19209 4.756 0 1 + 52017 22008 32482 32499 59877 59877 0.05532617091125758 VTWIKFEK 8 Unmodified _VTWIKFEK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|17|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|17|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 525.7588500976562 2 525.80276 1049.59097 0.34726 0.00018259 -3.5912 -0.0018883 -3.2439 -0.0017057 525.8005874551606 60.445 0.083069 63.827 63.781 63.864 3.3815 12 7 2 0 0 0 0.72333 1 14101 14101 4.3292 0 1 85022 + 52018 30595 32483 32500 59878 59878 0.06815521345333764 VTWIKFEK 8 Unmodified _VTWIKFEK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|17|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|17|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 525.80276 1049.59097 0.13983 7.3521E-05 -2.9707 -0.001562 -2.8309 -0.0014885 525.8013241923912 60.726 0.065285 63.991 63.936 64.001 3.2654 0.087075 0.00035697 NaN 3.9444 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 81671 + 52019 30595 32483 32500 0.06815521345333764 VTWIKFEK 8 Unmodified _VTWIKFEK_ 0 0 0 REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|17|2|sense REV__L1PB4_dup4915|chr10:31468432-31469214:+|1.130758695811624|0.0409546973236079|4.79|151.0|17|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 525.80276 1049.59097 0.46118 0.00024249 -3.8148 -0.0020058 -3.3536 -0.0017633 525.8003535145285 60.42 0.031906 63.894 63.878 63.91 3.4737 -0.0098546 -0.00053063 NaN 3.9444 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 83304 + 52020 30595 32483 32500 0.06815521345333764 VTWKQRYF 8 Unmodified _VTWKQRYF_ 0 0 0 L1MEc_dup6671|chr6:1692409-1693665:-|1.2951465935582318|0.0487694839959859|4.73|150.0|61|2|anti-sense L1MEc_dup6671|chr6:1692409-1693665:-|1.2951465935582318|0.0487694839959859|4.73|150.0|61|2|anti-sense L1MEc_dup6671|chr6:1692409-1693665:-|1.2951465935582318|0.0487694839959859|4.73|150.0|61|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.304931640625 2 564.303458 1126.59236 NaN NaN NaN NaN NaN NaN NaN 81.201 1 84.585 84.085 85.085 3.3839 0 0 0 0.40604 1 20220 20220 2.5775 0 1 52021 13125 32484 32501 59879 59879 0.03413155434077453 VTWLDLDD 8 Unmodified _VTWLDLDD_ 0 0 0 REV__ENSG00000128228|ENST00000248958|SDF2L1 REV__ENSG00000128228|ENST00000248958|SDF2L1 MSMS UPN46_class_I_Rep_3 1 488.7206115722656 2 488.73474 975.454927 NaN NaN NaN NaN NaN NaN NaN 53.477 1 53.477 52.977 53.977 0 0 0 0 0.39624 1 11509 11509 9.3474 0 1 + 52022 18894 32485 32502 59880 59880 -0.03378217956003482 VTWMLAQRQ 9 Unmodified _VTWMLAQRQ_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS UPN48_class_I_Rep_3 7 566.7998657226562 2 566.800226 1131.5859 0.48508 0.00027494 -2.0807 -0.0011794 -1.5956 -0.00090441 566.798964426115 79.069 0.058655 82.712 82.669 82.728 3.6423 6 5 2 0 0 0 0.46434 1 18738 18738 4.3292 1.0479 1 66071 52023 1596 32486 32503 59881 59881 0.02536894211038998 VTWVAVVTL 9 Unmodified _VTWVAVVTL_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MSMS UPN47_class_I_Rep_2 3 494.295654296875 2 494.29731 986.580068 NaN NaN NaN NaN NaN NaN NaN 60.853 1 64.118 63.618 64.618 3.2654 0 0 0 0.096434 1 14263 14263 25.399 4.9457 1 52024 16690 32487 32504 59882 59882 0.08624118971033568 VTYFRANFGCP 11 Unmodified _VTYFRANFGCP_ 0 0 0 REV__Tigger9b_dup402|chr9:14641404-14641979:+|1.069132502466275|0.3475164872194938|1.62|151.0|11|2|sense REV__Tigger9b_dup402|chr9:14641404-14641979:+|1.069132502466275|0.3475164872194938|1.62|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 637.8050537109375 2 637.802965 1273.59138 NaN NaN NaN NaN NaN NaN NaN 65.749 1 69.106 68.606 69.606 3.3576 0 0 0 0.38417 1 15703 15703 2.7352 1.0826 1 + 52025 32815 32488 32505 59883 59883 -0.034474269971042304 VTYLLRMM 8 Unmodified _VTYLLRMM_ 0 0 0 ENST00000518628.1_1_8:41476250-41476497:+|nuORF;ENSG00000158669|ENST00000396987|GPAT4 ENST00000518628.1_1_8:41476250-41476497:+|nuORF ENST00000518628.1_1_8:41476250-41476497:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 513.77880859375 2 513.777373 1025.54019 0.27007 0.00013875 1.1647 0.00059838 1.4347 0.00073713 513.7779364583419 77.899 0.23816 81.421 81.268 81.506 3.5221 35 24 2 0 0 0 0.82752 2 18556 18556;18570 21.747 21.747 1 83609 52026 3807 32489 32506 59884;59885 59884 0.028445327044664737 VTYLLRMM 8 Unmodified _VTYLLRMM_ 0 0 0 ENST00000518628.1_1_8:41476250-41476497:+|nuORF;ENSG00000158669|ENST00000396987|GPAT4 ENST00000518628.1_1_8:41476250-41476497:+|nuORF ENST00000518628.1_1_8:41476250-41476497:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 513.7774658203125 2 513.777373 1025.54019 0.36156 0.00018576 1.4462 0.00074302 1.8077 0.00092878 513.778038470393 77.868 0.25383 81.47 81.248 81.502 3.6016 42 23 2 0 0 0 0.82752 1 18407 18407 21.747 21.747 1 189930 52027 3807 32489 32506 59886 59886 0.028445327044664737 VTYLLRMM 8 Unmodified _VTYLLRMM_ 0 0 0 ENST00000518628.1_1_8:41476250-41476497:+|nuORF;ENSG00000158669|ENST00000396987|GPAT4 ENST00000518628.1_1_8:41476250-41476497:+|nuORF ENST00000518628.1_1_8:41476250-41476497:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 513.777373 1025.54019 0.3277 0.00016837 1.0658 0.00054757 1.3935 0.00071593 513.777933666948 77.881 0.4975 81.503 81.262 81.759 3.6222 0.038399 -0.00011555 NaN 21.747 86 48 2 NaN NaN NaN NaN 0 NaN NaN 0 176590 52028 3807 32489 32506 0.028445327044664737 VTYLNLQYL 9 Unmodified _VTYLNLQYL_ 0 0 0 REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|94|2|anti-sense REV__Tigger1_dup9090|chr12:45748414-45750583:-|2.09490920427318|0.0419810232007336|5.64|151.0|94|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.8106689453125 2 563.810782 1125.60701 0.43766 0.00024676 -0.10019 -5.6487E-05 0.33747 0.00019027 563.8105604887661 66.937 0.71545 70.128 69.903 70.618 3.1914 87 54 2 0 0 0 0.42249 1 16259 16259 6.7232 0 1 95293 + 52029 32561 32490 32507 59887 59887 0.04923182791549152 VTYPGELLL 9 Unmodified _VTYPGELLL_ 0 0 0 ENSG00000146386|ENST00000367660|ABRACL ENSG00000146386|ENST00000367660|ABRACL ENSG00000146386|ENST00000367660|ABRACL MULTI-SECPEP UPN48_class_I_Rep_2 6 502.78680419921875 2 502.786776 1003.559 0.29302 0.00014733 0.088259 4.4375E-05 0.38128 0.0001917 502.78667313332954 77.931 1.0499 81.553 81.097 82.147 3.6222 283 112 4 0 0 0 4.7138E-54 1 18435 18435 128.37 43.009 1 1739400 52030 3436 32491 32508 59888 59888 0.05736108871542456 VTYPGELLL 9 Unmodified _VTYPGELLL_ 0 0 0 ENSG00000146386|ENST00000367660|ABRACL ENSG00000146386|ENST00000367660|ABRACL ENSG00000146386|ENST00000367660|ABRACL MULTI-MSMS UPN48_class_I_Rep_3 7 502.7869567871094 2 502.786776 1003.559 0.30534 0.00015352 0.10309 5.1831E-05 0.40843 0.00020535 502.7866916415408 77.938 1.0618 81.56 81.073 82.135 3.6216 313 117 4 0 0 0 0.0059326 2 18405 18405;18437 141.83 44.752 1 2094900 52031 3436 32491 32508 59889;59890 59889 0.05736108871542456 VTYPGELLL 9 Unmodified _VTYPGELLL_ 0 0 0 ENSG00000146386|ENST00000367660|ABRACL ENSG00000146386|ENST00000367660|ABRACL ENSG00000146386|ENST00000367660|ABRACL MULTI-MATCH UPN48_class_I_Rep_1 5 2 502.786776 1003.559 0.22973 0.00011551 0.069693 3.5041E-05 0.29943 0.00015055 502.78673453421675 78.076 0.54318 81.598 81.185 81.729 3.5221 0.028079 -1.8731E-05 NaN 128.37 109 59 2 NaN NaN NaN NaN 0 NaN NaN 0 1340600 52032 3436 32491 32508 0.05736108871542456 VTYVPVTTF 9 Unmodified _VTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MULTI-MSMS UPN48_class_I_Rep_1 5 513.7789306640625 2 513.778951 1025.54335 0.28926 0.00014862 -0.33506 -0.00017215 -0.045802 -2.3532E-05 513.7789058391526 68.832 0.36217 72.287 72.072 72.434 3.4548 40 28 2 0 0 0 0.42249 2 15941 15899;15941 6.7232 0 1 80770 52033 1083 32492 32509 59891;59892 59892 0.031598223544506254 VTYVPVTTF 9 Unmodified _VTYVPVTTF_ 0 0 0 ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-3|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF ENSG00000071082|ENST00000264258|RPL31 ENSG00000071082|ENST00000264258|RPL31 MULTI-MSMS UPN48_class_I_Rep_3 7 513.7794189453125 2 513.778951 1025.54335 0.38225 0.00019639 -0.46552 -0.00023917 -0.083265 -4.278E-05 513.7787856648274 68.67 0.46254 72.179 71.946 72.408 3.5094 49 34 2 0 0 0 0.28552 1 15742 15742 14.838 6.245 1 114090 52034 1083 32492 32509 59893 59893 0.031598223544506254 VVAAPAAVRR 10 Unmodified _VVAAPAAVRR_ 0 0 0 ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF MSMS UPN46_class_I_Rep_3 1 505.3172912597656 2 505.3169 1008.61925 NaN NaN NaN NaN NaN NaN NaN 108.45 1 108.45 107.95 108.95 0 0 0 0 0.53105 1 26522 26522 6.7232 0.51738 1 52035 7103 32493 32510 59894 59894 0.11528264045261949 VVAAPAAVRR 10 Unmodified _VVAAPAAVRR_ 0 0 0 ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 505.31744384765625 2 505.3169 1008.61925 0.31448 0.00015891 -1.7031 -0.00086061 -1.3886 -0.0007017 505.3159585807981 107.99 0.33447 107.99 107.91 108.25 0 33 24 2 0 0 0 0.84575 1 26413 26413 6.7232 0.99131 1 45311000 52036 7103 32493 32510 59895 59895 0.11528264045261949 VVAAVISSPG 10 Unmodified _VVAAVISSPG_ 0 0 0 REV__L1PA10_dup1042|chr3:17492864-17495227:-|3.672927261739708|0.0596017464836966|5.95|151.0|96|2|anti-sense REV__L1PA10_dup1042|chr3:17492864-17495227:-|3.672927261739708|0.0596017464836966|5.95|151.0|96|2|anti-sense MSMS UPN47_class_I_Rep_1 2 450.2633361816406 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 71.987 1 75.362 74.862 75.862 3.3751 0 0 0 0.53105 1 17586 17586 10.074 0.6908 1 + 52037 28922 32494 32511 59896 59896 0.059066690402460154 VVAAVPILV 9 Unmodified _VVAAVPILV_ 0 0 0 HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|32|1|sense HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|32|1|sense HERV9NC-int_dup123|chr7:152030596-152035827:-|2.3557721841966366|0.122522540692282|4.27|151.0|32|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7994079589844 2 440.796946 879.57934 -0.33559 -0.00014793 3.1233 0.0013768 2.7877 0.0012288 440.7996352591568 54.352 0.98672 57.538 57.26 58.246 3.1856 83 58 2 0 0 0 0.48414 1 12456 12456 2.3027 0 1 104460 52038 8095 32495 32512 59897 59897 0.1347332432200119 VVAFFVTMCT 10 Unmodified _VVAFFVTMCT_ 0 0 0 L1PA15_dup2763|chr5:131376493-131377174:-|2.70858860472436|0.0616466265359473|5.46|151.0|25|1|anti-sense L1PA15_dup2763|chr5:131376493-131377174:-|2.70858860472436|0.0616466265359473|5.46|151.0|25|1|anti-sense L1PA15_dup2763|chr5:131376493-131377174:-|2.70858860472436|0.0616466265359473|5.46|151.0|25|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.777587890625 2 559.274664 1116.53477 0.096627 5.4041E-05 -0.1259 -7.0413E-05 -0.029274 -1.6372E-05 559.7774016206694 44.563 1.3013 48.258 47.869 49.171 3.6951 303 85 5 0 0 0 0.51003 1 9216 9216 10.824 1.4408 1 1256100 52039 13916 32496 32513 59898 59898 -0.01883190878015739 VVAGIKEYF 9 Unmodified _VVAGIKEYF_ 0 0 0 ENSG00000123562|ENST00000441076|MORF4L2;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000123562|ENST00000441076|MORF4L2;nc|ENSG00000185787|Q9UBU8|MORF4L1 nc|ENSG00000185787|Q9UBU8|MORF4L1 MULTI-MSMS UPN46_class_I_Rep_3 1 513.2876586914062 2 513.286943 1024.55933 0.24209 0.00012426 0.25066 0.00012866 0.49275 0.00025292 513.2869179103074 59.389 0.45337 59.389 59.106 59.56 0 70 48 2 0 0 0 0.062142 1 13111 13111 43.772 18.373 1 210580 52040 16778;2427 32497 32514 59899 59899 0.04803528591378381 VVAGQRLQP 9 Unmodified _VVAGQRLQP_ 0 0 0 SVA_B_dup71|chr2:74123568-74124936:+|1.048068550495648|0.4119855717807794|1.35|151.0|50|2|anti-sense SVA_B_dup71|chr2:74123568-74124936:+|1.048068550495648|0.4119855717807794|1.35|151.0|50|2|anti-sense SVA_B_dup71|chr2:74123568-74124936:+|1.048068550495648|0.4119855717807794|1.35|151.0|50|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.271240234375 2 484.287808 966.561064 NaN NaN NaN NaN NaN NaN NaN 43.391 1 43.391 42.891 43.891 0 0 0 0 0.3264 1 8660 8660 9.3474 4.1168 1 52041 32846 32498 32515 59900 59900 0.07644582399984756 VVAGQRRRR 9 Unmodified _VVAGQRRRR_ 0 0 0 nc|ENSG00000183955|Q9NQR1|KMT5A nc|ENSG00000183955|Q9NQR1|KMT5A nc|ENSG00000183955|Q9NQR1|KMT5A MSMS UPN46_class_I_Rep_3 1 549.3440551757812 2 549.341772 1096.66899 NaN NaN NaN NaN NaN NaN NaN 108.28 1 108.28 107.78 108.78 0 0 0 0 0.28335 1 26471 26471 11.64 1.5664 1 52042 16772 32499 32516 59901 59901 0.124523917739225 VVAHSGSLI 9 Unmodified _VVAHSGSLI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.7550964355469 2 441.75581 881.497067 0.16326 7.212E-05 -0.56528 -0.00024971 -0.40202 -0.0001776 441.7551271975634 107.73 0.22475 111.4 111.23 111.45 3.6724 53 27 4 0 0 0 0.40174 1 26400 26400 7.9102 2.6795 1 4935500 + 52043 23454 32500 32517 59902 59902 0.05157802243047627 VVAHSGSLI 9 Unmodified _VVAHSGSLI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 441.75581 881.497067 0.16326 7.212E-05 -0.56528 -0.00024971 -0.40202 -0.0001776 441.7551271975634 107.73 0.22475 111.4 111.23 111.45 3.6724 0.05227 0.00041105 NaN 7.9102 53 27 4 NaN NaN NaN NaN 0 NaN NaN 0 4935500 + 52044 23454 32500 32517 0.05157802243047627 VVAHSGSLI 9 Unmodified _VVAHSGSLI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 441.75581 881.497067 -0.078621 -3.4731E-05 -1.1661 -0.00051515 -1.2448 -0.00054988 441.75505981801643 107.73 0.088707 111.26 111.2 111.28 3.5345 -0.084393 -0.00011982 NaN 7.9102 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4060800 + 52045 23454 32500 32517 0.05157802243047627 VVAHSGSLI 9 Unmodified _VVAHSGSLI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 441.75581 881.497067 -0.2695 -0.00011905 -0.90809 -0.00040115 -1.1776 -0.00052021 441.7551372985285 107.72 0.1073 111.26 111.21 111.32 3.5382 -0.090481 0.00010817 NaN 7.9102 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4060500 + 52046 23454 32500 32517 0.05157802243047627 VVAHSGSLI 9 Unmodified _VVAHSGSLI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 441.75581 881.497067 -0.026452 -1.1685E-05 -0.61817 -0.00027308 -0.64463 -0.00028477 441.75535254382316 107.75 0.10706 111.38 111.3 111.41 3.6313 0.031246 0.00036432 NaN 7.9102 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1966000 + 52047 23454 32500 32517 0.05157802243047627 VVAHSGSLI 9 Unmodified _VVAHSGSLI_ 0 0 0 REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense REV__HAL1b_dup3874|chr12:76837951-76838833:-|1.721788213162628|0.4371308063943004|1.98|151.0|42|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 441.75581 881.497067 0.12654 5.5898E-05 -1.5972 -0.00070556 -1.4706 -0.00064967 441.75494516556796 107.71 0.088089 111.39 111.34 111.42 3.6783 0.044618 -0.00050065 NaN 7.9102 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 7261300 + 52048 23454 32500 32517 0.05157802243047627 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 461.2917175292969 2 461.290685 920.566818 0.21598 9.963E-05 0.012956 5.9767E-06 0.22894 0.00010561 461.29059715072253 107.94 0.37536 107.94 107.87 108.25 0 45 28 4 0 0 0 0.82752 2 26335 26335;26405 14.582 14.582 1 107120000 + 52049 26977 32501 32518 59903;59904 59903 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 461.291015625 2 461.290685 920.566818 0.21564 9.9474E-05 -0.19528 -9.0081E-05 0.020361 9.3923E-06 461.2903849520154 108.27 0.042862 108.27 108.26 108.3 0 8 5 2 0 0 0 0.82752 1 26465 26465 14.582 8.8213 1 2689700 + 52050 26977 32501 32518 59905 59905 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 461.2908630371094 2 461.290685 920.566818 0.20486 9.4501E-05 0.18266 8.4258E-05 0.38752 0.00017876 461.29068220893333 107.77 0.24319 111.44 111.35 111.59 3.6724 44 19 3 0 0 0 0.82752 1 26401 26401 14.582 5.2343 1 58498000 + 52051 26977 32501 32518 59906 59906 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MSMS UPN47_class_I_Rep_2 3 461.29083251953125 2 461.290685 920.566818 NaN NaN NaN NaN NaN NaN NaN 111.03 1 114.56 114.06 115.06 3.5271 0 0 0 0.39624 1 27032 27032 9.3474 4.1168 1 + 52052 26977 32501 32518 59907 59907 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 461.29052734375 2 461.290685 920.566818 0.15576 7.1851E-05 -0.16918 -7.804E-05 -0.013417 -6.189E-06 461.2905157694416 107.78 0.18082 111.31 111.23 111.41 3.5345 47 20 3 0 0 0 0.72333 1 26076 26076 14.582 9.351 1 23015000 + 52053 26977 32501 32518 59908 59908 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 461.29071044921875 2 461.290685 920.566818 -0.057849 -2.6685E-05 -0.11949 -5.5119E-05 -0.17734 -8.1804E-05 461.2905433497785 107.77 0.15791 111.31 111.23 111.39 3.5382 51 20 4 0 0 0 0.82752 1 26310 26310 14.582 8.8213 1 36239000 + 52054 26977 32501 32518 59909 59909 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 461.2905578613281 2 461.290685 920.566818 0.046534 2.1466E-05 0.19297 8.9015E-05 0.2395 0.00011048 461.2906761195707 107.75 0.57531 111.39 111.28 111.86 3.6313 104 53 5 0 0 0 0.82752 2 25975 25975;26024 9.3474 4.1168 1 71181000 + 52055 26977 32501 32518 59910;59911 59910 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 461.29046630859375 2 461.290685 920.566818 0.18236 8.4119E-05 -0.096921 -4.4709E-05 0.085435 3.9411E-05 461.290584549455 107.73 0.19736 111.41 111.36 111.56 3.6783 49 19 4 0 0 0 0.82752 1 25476 25476 14.582 8.8213 1 65350000 + 52056 26977 32501 32518 59912 59912 0.10335725702316267 VVAIHARR 8 Unmodified _VVAIHARR_ 0 0 0 REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense REV__L1MC4a_dup1905|chr3:72393566-72394431:-|1.1413704263503626|0.0235708067236142|5.6|151.0|33|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 461.2907409667969 2 461.290685 920.566818 0.18657 8.6061E-05 -0.11447 -5.2806E-05 0.072091 3.3255E-05 461.2905307673849 107.75 0.21892 111.43 111.36 111.58 3.6813 54 21 4 0 0 0 0.82752 2 25420 25420;25443 14.582 8.8213 1 75705000 + 52057 26977 32501 32518 59913;59914 59913 0.10335725702316267 VVAKKLNK 8 Unmodified _VVAKKLNK_ 0 0 0 REV__ENSG00000204262|ENST00000374866|COL5A2 REV__ENSG00000204262|ENST00000374866|COL5A2 MSMS UPN48_class_I_Rep_1 5 450.64190673828125 2 450.30547 898.596387 NaN NaN NaN NaN NaN NaN NaN 42.691 1 46.199 45.699 46.699 3.5079 0 0 0 0.40746 1 7925 7925 0.69038 0 1 + 52058 21184 32502 32519 59915 59915 0.1430324492780528 VVAKKLSLL 9 Unmodified _VVAKKLSLL_ 0 0 0 REV__L1MB3_dup7061|chr7:139887254-139887881:-|1.904680175942215|0.0578772231220914|5.04|151.0|21|3|sense REV__L1MB3_dup7061|chr7:139887254-139887881:-|1.904680175942215|0.0578772231220914|5.04|151.0|21|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.8360290527344 2 485.836603 969.658653 -0.47874 -0.00023259 0.26021 0.00012642 -0.21853 -0.00010617 485.83667828721474 30.293 0.7796 33.605 33.158 33.937 3.3116 94 63 2 0 0 0 0.50582 2 4908 4908;4989 0 0 1 69718 + 52059 25911 32503 32520 59916;59917 59916 0.1726097127615276 VVALELAIY 9 Unmodified _VVALELAIY_ 0 0 0 L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|49|3|anti-sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|49|3|anti-sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_3 4 495.7967224121094 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 75.582 1 78.839 78.339 79.339 3.2573 0 0 0 0.381 1 18758 18758 5.2307 0 1 52060 11807 32504 32521 59918 59918 0.08452699251165541 VVAPPGVVVSR 11 Unmodified _VVAPPGVVVSR_ 0 0 0 ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5 ENST00000491144.5_1_3:183853173-183855624:+|nuORF ENST00000491144.5_1_3:183853173-183855624:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 540.3325805664062 2 540.332216 1078.64988 0.32367 0.00017489 -0.065694 -3.5496E-05 0.25797 0.00013939 540.3321303155645 47.23 0.56012 47.23 46.92 47.48 0 99 55 2 0 0 0 0.32209 3 9755 9673;9714;9755 27.223 16.424 1 284400 52061 3385 32505 32522 59919;59920;59921 59921 0.11369997639667417 VVAPVTVRAAP 11 Unmodified _VVAPVTVRAAP_ 0 0 0 HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|63|2|sense;HERVK9-int_dup18|chr1:54630776-54633691:+|3.1073298934328264|0.3900889070619937|2.99|151.0|66|3|sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|63|2|sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|63|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.33349609375 2 540.332216 1078.64988 0.32367 0.00017489 -0.065694 -3.5496E-05 0.25797 0.00013939 540.3321303155645 47.23 0.56012 47.23 46.92 47.48 0 99 55 2 0 0 0 0.37961 1 9794 9794 10.8 0 1 284400 52062 8311 32506 32523 59922 59922 0.11369997639667417 VVAQTCNPST 10 Unmodified _VVAQTCNPST_ 0 0 0 AluJb_dup3586|chr1:40377004-40377318:+|1.513472681565852|0.0573514598103732|4.72|151.0|10|3|sense AluJb_dup3586|chr1:40377004-40377318:+|1.513472681565852|0.0573514598103732|4.72|151.0|10|3|sense AluJb_dup3586|chr1:40377004-40377318:+|1.513472681565852|0.0573514598103732|4.72|151.0|10|3|sense MSMS UPN48_class_I_Rep_3 7 509.82855224609375 2 510.244949 1018.47534 NaN NaN NaN NaN NaN NaN NaN 67.968 1 71.475 70.975 71.975 3.5077 0 0 0 0.53105 1 15555 15555 1.6526 0.85899 1 52063 45 32507 32524 59923 59923 -0.033153705678500955 VVARQGRP 8 Unmodified _VVARQGRP_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-SECPEP UPN47_class_I_Rep_2 3 441.2976989746094 2 441.767043 881.519533 -0.19582 -8.6506E-05 0.79588 0.00035159 0.60006 0.00026509 441.7698694523145 53.314 0.17595 56.641 56.503 56.679 3.3266 12 10 2 0 0 0 0.72333 1 11965 11965 0.69038 0 1 48450 52064 5428 32508 32525 59924 59924 0.07403446431328575 VVARQWLP 8 Unmodified _VVARQWLP_ 0 0 0 L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|149|3|sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|149|3|sense L1MA3_dup3024|chr5:81686929-81692923:+|6.898839073789141|0.0501251344845337|7.1|151.0|149|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.7876892089844 2 484.787444 967.560336 0.16711 8.1011E-05 0.66825 0.00032396 0.83535 0.00040497 484.7877810057361 38.398 1.4414 41.903 41.266 42.707 3.5052 276 129 3 0 0 0 0.82752 1 6662 6662 6.3541 0 1 318400 52065 9517 32509 32526 59925 59925 0.07525787750932977 VVARRLPRRL 10 Unmodified _VVARRLPRRL_ 0 0 0 ENST00000331569.5_1_8:37554703-37555105:+|nuORF ENST00000331569.5_1_8:37554703-37555105:+|nuORF ENST00000331569.5_1_8:37554703-37555105:+|nuORF MSMS UPN46_class_I_Rep_3 1 618.66796875 2 618.412198 1234.80984 NaN NaN NaN NaN NaN NaN NaN 114.29 1 114.29 113.79 114.79 0 0 0 0 0.53105 1 28244 28244 0.40072 0 1 52066 6190 32510 32527 59926 59926 0.20182970427367763 VVASHHYR 8 Unmodified _VVASHHYR_ 0 0 0 REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 484.2718505859375 2 484.756675 967.498798 0.257 0.00012458 -1.569 -0.00076059 -1.312 -0.000636 484.7556654837449 43.808 0.30885 43.808 43.604 43.913 0 34 29 2 0 0 0 0.72333 1 8734 8734 6.3541 0.59368 1 147480 + 52067 18077 32511 32528 59927 59927 0.013748560516546604 VVATGISVTI 10 Unmodified _VVATGISVTI_ 0 0 0 REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|28|1|anti-sense REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|28|1|anti-sense MSMS UPN47_class_I_Rep_1 2 480.2925720214844 2 480.292225 958.569897 NaN NaN NaN NaN NaN NaN NaN 67.456 1 70.817 70.317 71.317 3.3611 0 0 0 0.53105 1 16223 16223 5.7319 0 1 + 52068 28213 32512 32529 59928 59928 0.08895511245816579 VVATRQLR 8 Unmodified _VVATRQLR_ 0 0 0 ENSG00000188778|ENST00000345060|ADRB3 ENSG00000188778|ENST00000345060|ADRB3 ENSG00000188778|ENST00000345060|ADRB3 MSMS UPN47_class_I_Rep_2 3 471.79638671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 24.039 1 27.505 27.005 28.005 3.4655 0 0 0 0.40746 1 3123 3123 0.69038 0 1 52069 5250 32513 32530 59929 59929 0.1039228863688777 VVAYLMIFH 9 Unmodified _VVAYLMIFH_ 0 0 0 ENSG00000198842|ENST00000361200|STYXL2 ENSG00000198842|ENST00000361200|STYXL2 ENSG00000198842|ENST00000361200|STYXL2 MULTI-MSMS UPN48_class_I_Rep_3 7 547.783935546875 2 546.799163 1091.58377 0.32318 0.00017671 2.6335 0.00144 2.9567 0.0016167 546.8012557932557 54.563 0.038979 58.133 58.098 58.137 3.5694 4 2 2 0 0 0 0.48414 1 11477 11477 2.3027 0.24298 1 38266 52070 5473 32514 32531 59930 59930 0.04164465473218115 VVCFGVSISAT 11 Unmodified _VVCFGVSISAT_ 0 0 0 HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|71|3|anti-sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|71|3|anti-sense HERVK3-int_dup257|chr19:11858923-11860185:-|7.895341524535248|0.4607489548727891|4.1|149.0|71|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7814331054688 2 541.781167 1081.54778 0.38222 0.00020708 0.34112 0.00018481 0.72334 0.00039189 541.78127246001 47.772 0.83982 51.294 51.098 51.938 3.5219 93 60 2 0 0 0 0.65271 1 9602 9602 2.9952 1.151 1 247760 52071 8305 32515 32532 59931 59931 0.01026963505751155 VVCHLTRRRK 10 Unmodified _VVCHLTRRRK_ 0 0 0 L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|59|2|sense L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|59|2|sense L1MA4A_dup652|chr2:108456968-108459745:-|1.572775025076901|0.1491464100210715|3.4|151.0|59|2|sense MSMS UPN48_class_I_Rep_2 6 634.3815307617188 2 634.38004 1266.74553 NaN NaN NaN NaN NaN NaN NaN 106.66 1 110.34 109.84 110.84 3.6834 0 0 0 0.53105 1 25208 25208 1.4819 0 1 52072 9856 32516 32533 59932 59932 0.12282447278880682 VVCSLLLGV 9 Unmodified _VVCSLLLGV_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense MSMS UPN46_class_I_Rep_3 1 451.7727355957031 2 451.772614 901.530675 NaN NaN NaN NaN NaN NaN NaN 12.482 1 12.482 11.982 12.982 0 0 0 0 0.4029 1 124 124 0 0 1 52073 11507 32517 32534 59933 59933 0.07597087690612625 VVCSLLLGV 9 Unmodified _VVCSLLLGV_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense MSMS UPN46_class_I_Rep_3 1 451.7728271484375 2 451.772614 901.530675 NaN NaN NaN NaN NaN NaN NaN 13.089 1 13.089 12.589 13.589 0 0 0 0 0.4029 1 294 294 0 0 1 52074 11507 32517 32534 59934 59934 0.07597087690612625 VVDAKTIFT 9 Unmodified _VVDAKTIFT_ 0 0 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF nc|ENSG00000162521|Q09028-3|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-MSMS UPN47_class_I_Rep_2 3 498.27435302734375 2 497.2844 992.554247 0.24671 0.00012268 0.10891 5.4158E-05 0.35561 0.00017684 497.28436771835004 62.068 1.145 65.328 64.966 66.111 3.2594 161 76 3 0 0 0 0.42249 1 14726 14726 6.7232 0 1 1007300 52075 3938;7132 32518 32535 59935 59935 0.057672247287769096 VVDAVVTQV 9 Unmodified _VVDAVVTQV_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MSMS UPN46_class_I_Rep_3 1 465.2673645019531 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 55.095 1 55.095 54.595 55.595 0 0 0 0 0.27207 1 11966 11966 12.241 5.5175 1 52076 4343 32519 32536 59936 59936 0.05582651694658125 VVDAVVTQV 9 Unmodified _VVDAVVTQV_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 465.26873779296875 2 465.26875 928.522947 -0.027247 -1.2677E-05 0.13514 6.2876E-05 0.10789 5.0199E-05 465.26861381040555 50.949 0.58105 54.545 54.201 54.782 3.5965 47 27 2 0 0 0 0.279 1 11193 11193 15.248 3.7538 1 108090 52077 4343 32519 32536 59937 59937 0.05582651694658125 VVDAVVTQV 9 Unmodified _VVDAVVTQV_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 465.268310546875 2 465.26875 928.522947 0.050924 2.3693E-05 -0.26234 -0.00012206 -0.21142 -9.8368E-05 465.26847215366575 51.083 0.74996 54.421 54.13 54.88 3.3386 57 39 2 0 0 0 0.2924 1 11269 11269 14.405 5.0223 1 118150 52078 4343 32519 32536 59938 59938 0.05582651694658125 VVDAVVTQV 9 Unmodified _VVDAVVTQV_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 465.26849365234375 2 465.26875 928.522947 0.022919 1.0664E-05 -0.14037 -6.531E-05 -0.11745 -5.4646E-05 465.2685588876742 51.192 0.58805 54.409 54.18 54.768 3.2163 51 29 2 0 0 0 0.2924 1 11374 11374 14.405 5.66 1 157470 52079 4343 32519 32536 59939 59939 0.05582651694658125 VVDDEIYYF 9 Unmodified _VVDDEIYYF_ 0 0 0 ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 MULTI-MSMS UPN47_class_I_Rep_1 2 581.7689819335938 2 581.76878 1161.52301 0.37255 0.00021674 -0.20693 -0.00012039 0.16562 9.6352E-05 581.7687096159344 73.802 0.82367 77.188 76.719 77.543 3.3861 182 79 3 0 0 0 0.11897 3 18168 18168;18205;18232 30.225 17.693 1 365450 52080 4061 32520 32537 59940;59941;59942 59940 -0.05129393096012791 VVDDEIYYF 9 Unmodified _VVDDEIYYF_ 0 0 0 ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 MULTI-MSMS UPN47_class_I_Rep_2 3 582.2703247070312 2 581.76878 1161.52301 0.44474 0.00025874 -0.42844 -0.00024925 0.0163 9.4828E-06 581.7686112115027 73.909 1.0309 77.214 76.725 77.755 3.3048 221 103 3 0 0 0 0.12799 2 18281 18212;18281 28.487 20.577 1 323150 52081 4061 32520 32537 59943;59944 59944 -0.05129393096012791 VVDDEIYYF 9 Unmodified _VVDDEIYYF_ 0 0 0 ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-5|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 ENSG00000163939|ENST00000707071|PBRM1 MULTI-MSMS UPN47_class_I_Rep_3 4 581.7691650390625 2 581.76878 1161.52301 0.45712 0.00026594 -0.29074 -0.00016914 0.16639 9.6799E-05 581.7686566949859 73.982 1.0045 77.218 76.714 77.719 3.2363 217 103 3 0 0 0 0.081857 3 18327 18327;18358;18394 38.151 28.487 1 361810 52082 4061 32520 32537 59945;59946;59947 59945 -0.05129393096012791 VVDEIFNEY 9 Unmodified _VVDEIFNEY_ 0 0 0 ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB MULTI-MSMS UPN47_class_I_Rep_1 2 564.266357421875 2 564.266404 1126.51826 0.35193 0.00019858 -0.17169 -9.6879E-05 0.18024 0.00010171 564.2661471392229 65.764 0.83005 69.122 68.708 69.538 3.3576 112 48 3 0 0 0 0.0058741 4 15682 15641;15682;15727;15770 76.825 32.966 1 411170 52083 1482 32521 32538 59948;59949;59950;59951 59949 -0.03994277238757604 VVDEIFNEY 9 Unmodified _VVDEIFNEY_ 0 0 0 ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB MULTI-MSMS UPN47_class_I_Rep_2 3 564.2664794921875 2 564.266404 1126.51826 0.36969 0.0002086 -0.085188 -4.8069E-05 0.2845 0.00016053 564.2662328109839 65.93 0.83307 69.189 68.874 69.707 3.2588 115 47 3 0 0 0 0.013215 4 15830 15749;15792;15830;15867 67.838 30.287 1 452670 52084 1482 32521 32538 59952;59953;59954;59955 59954 -0.03994277238757604 VVDEIFNEY 9 Unmodified _VVDEIFNEY_ 0 0 0 ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB ENSG00000100220|ENST00000216038|RTCB MULTI-MSMS UPN47_class_I_Rep_3 4 564.2665405273438 2 564.266404 1126.51826 0.43524 0.00024559 -0.077851 -4.3929E-05 0.35739 0.00020166 564.2661905817357 65.96 0.85522 69.145 68.767 69.622 3.1853 132 55 3 0 0 0 0.006828 4 15909 15827;15869;15909;15946 72.968 38.757 1 500550 52085 1482 32521 32538 59956;59957;59958;59959 59958 -0.03994277238757604 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MSMS UPN47_class_I_Rep_1 2 589.30859375 2 589.308603 1176.60265 0.36322 0.00021405 0.026619 1.5687E-05 0.38984 0.00022974 589.3085872179083 70.604 0.58726 73.975 73.678 74.266 3.3713 97 54 2 0 0 0 0.2744 3 17141 17105;17141;17180 20.581 11.836 1 221320 52086 1653 32522 32539 59960;59961;59962 59961 0.0214167357801216 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MSMS UPN47_class_I_Rep_2 3 589.3086547851562 2 589.308603 1176.60265 0.41485 0.00024448 -0.093742 -5.5243E-05 0.32111 0.00018923 589.3084278700055 70.764 0.6252 74.047 73.783 74.409 3.2828 98 58 2 0 0 0 0.3054 3 17287 17213;17251;17287 29.437 13.288 1 137080 52087 1653 32522 32539 59963;59964;59965 59965 0.0214167357801216 VVDIQGVGDLY 11 Unmodified _VVDIQGVGDLY_ 0 0 0 ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K ENSG00000103319|ENST00000263026|EEF2K MULTI-MSMS UPN47_class_I_Rep_3 4 589.3099975585938 2 589.308603 1176.60265 0.45032 0.00026537 -0.0089572 -5.2786E-06 0.44136 0.0002601 589.3085689099437 70.785 0.53461 73.997 73.742 74.277 3.2113 88 44 3 0 0 0 0.2675 4 17298 17272;17298;17337;17375 35.612 14.075 1 180820 52088 1653 32522 32539 59966;59967;59968;59969 59967 0.0214167357801216 VVDLLLWLLW 10 Unmodified _VVDLLLWLLW_ 0 0 0 REV__L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|281|2|anti-sense REV__L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|281|2|anti-sense MSMS UPN47_class_I_Rep_3 4 635.3856811523438 2 635.383917 1268.75328 NaN NaN NaN NaN NaN NaN NaN 89.376 1 92.77 92.27 93.27 3.3931 0 0 0 0.53105 1 22409 22409 0.45834 0 1 + 52089 30233 32523 32540 59970 59970 0.1296548502746191 VVDNLQHLY 9 Unmodified _VVDNLQHLY_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH MULTI-MSMS UPN47_class_I_Rep_1 2 550.7911987304688 2 550.790381 1099.56621 0.20527 0.00011306 0.7125 0.00039244 0.91777 0.0005055 550.7907598635645 47.687 0.23991 51.382 51.281 51.521 3.6951 33 20 2 0 0 0 0.30034 2 10208 10208;10246 13.906 8.6092 1 172770 52090 756 32524 32541 59971;59972 59971 0.020408414719668144 VVDNLQHLY 9 Unmodified _VVDNLQHLY_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH MULTI-MSMS UPN47_class_I_Rep_2 3 550.7908935546875 2 550.790381 1099.56621 0.33404 0.00018399 0.19637 0.00010816 0.53041 0.00029214 550.7904342284265 48.039 0.5125 51.388 51.224 51.736 3.3492 46 31 2 0 0 0 0.10568 2 10358 10358;10412 32.786 18.88 1 125960 52091 756 32524 32541 59973;59974 59973 0.020408414719668144 VVDNLQHLY 9 Unmodified _VVDNLQHLY_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH nc|ENSG00000010322|Q9Y2I1-4|NISCH MULTI-MSMS UPN47_class_I_Rep_3 4 550.7910766601562 2 550.790381 1099.56621 0.3798 0.00020919 0.4181 0.00023029 0.7979 0.00043948 550.7906270919813 48.102 0.33515 51.342 51.248 51.583 3.2405 36 21 2 0 0 0 0.36392 2 10426 10426;10476 10.074 5.7447 1 101570 52092 756 32524 32541 59975;59976 59975 0.020408414719668144 VVDVRIYI 8 Unmodified _VVDVRIYI_ 0 0 0 L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|162|2|anti-sense L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|162|2|anti-sense L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|162|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.7949523925781 2 488.794935 975.575317 0.11881 5.8072E-05 -0.10779 -5.2689E-05 0.011013 5.3832E-06 488.7947561873663 65.401 0.84132 68.756 68.421 69.263 3.3557 72 48 2 0 0 0 0.82752 1 15530 15530 4.756 0 1 132520 52093 10026 32525 32542 59977 59977 0.08655234828268021 VVDVVVLLL 9 Unmodified _VVDVVVLLL_ 0 0 0 REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense MSMS UPN47_class_I_Rep_1 2 484.824951171875 2 484.823161 967.631769 NaN NaN NaN NaN NaN NaN NaN 116.02 1 119.61 119.11 120.11 3.5943 0 0 0 0.4029 1 28722 28722 0 0 1 + 52094 23766 32526 32543 59978 59978 0.1466586266496961 VVDVVVLLL 9 Unmodified _VVDVVVLLL_ 0 0 0 REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense MSMS UPN47_class_I_Rep_2 3 484.7461853027344 2 484.823161 967.631769 NaN NaN NaN NaN NaN NaN NaN 116.02 1 119.51 119.01 120.01 3.4965 0 0 0 0.4029 1 28310 28310 0 0 1 + 52095 23766 32526 32543 59979 59979 0.1466586266496961 VVDVVVLLL 9 Unmodified _VVDVVVLLL_ 0 0 0 REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense MSMS UPN47_class_I_Rep_3 4 484.8260192871094 2 484.823161 967.631769 NaN NaN NaN NaN NaN NaN NaN 111.14 1 114.67 114.17 115.17 3.529 0 0 0 0.4029 1 27271 27271 0 0 1 + 52096 23766 32526 32543 59980 59980 0.1466586266496961 VVDVVVLLL 9 Unmodified _VVDVVVLLL_ 0 0 0 REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|134|1|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7535400390625 2 484.823161 967.631769 NaN NaN NaN NaN NaN NaN NaN 27.441 1 31.004 30.504 31.504 3.5629 0 0 0 0.4029 1 3534 3534 0 0 1 + 52097 23766 32526 32543 59981 59981 0.1466586266496961 VVEEFNTL 8 Unmodified _VVEEFNTL_ 0 0 0 L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|96|2|sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|96|2|sense L1M2_dup3704|chr6:147296102-147301352:+|7.714055469577193|0.2240877977918899|5.11|151.0|96|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 475.74493408203125 2 475.745108 949.475663 0.255 0.00012132 0.10055 4.7835E-05 0.35555 0.00016915 475.74500484936954 103.95 0.58067 103.95 103.68 104.26 0 87 53 2 0 0 0 0.82752 1 25400 25400 2.5775 0 1 447740 52098 8683 32527 32544 59982 59982 -0.0010962757631887143 VVEIFHFPG 9 Unmodified _VVEIFHFPG_ 0 0 0 L1PA15_dup3515|chr7:64673341-64675860:-|2.0736760511567587|0.0717007647700919|4.85|151.0|129|2|anti-sense L1PA15_dup3515|chr7:64673341-64675860:-|2.0736760511567587|0.0717007647700919|4.85|151.0|129|2|anti-sense L1PA15_dup3515|chr7:64673341-64675860:-|2.0736760511567587|0.0717007647700919|4.85|151.0|129|2|anti-sense MSMS UPN48_class_I_Rep_3 7 522.7792358398438 2 522.779285 1043.54402 NaN NaN NaN NaN NaN NaN NaN 44.972 1 48.61 48.11 49.11 3.6372 0 0 0 0.38299 1 8558 8558 4.756 0 1 52099 13932 32528 32545 59983 59983 0.023986617941773147 VVEINVLFV 9 Unmodified _VVEINVLFV_ 0 0 0 REV__Tigger1_dup2444|chr3:105765530-105766842:+|1.105474032884794|0.1747537788759456|2.66|151.0|47|1|anti-sense REV__Tigger1_dup2444|chr3:105765530-105766842:+|1.105474032884794|0.1747537788759456|2.66|151.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 516.312255859375 2 516.310418 1030.60628 NaN NaN NaN NaN NaN NaN NaN 102.98 1 106.76 106.26 107.26 3.7788 0 0 0 0.39598 1 25333 25333 1.6526 0 1 + 52100 32401 32529 32546 59984 59984 0.0922038814253483 VVEKIELL 8 Unmodified _VVEKIELL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS UPN48_class_I_Rep_1 5 471.797119140625 2 471.797143 941.579734 0.13268 6.26E-05 -0.63597 -0.00030005 -0.50329 -0.00023745 471.7967166813857 69.822 1.0491 73.281 72.772 73.821 3.4598 166 80 3 0 0 0 0.82752 2 16132 16132;16336 4.756 0 1 373950 52101 4649 32530 32547 59985;59986 59985 0.10660699251184269 VVEKIELL 8 Unmodified _VVEKIELL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS UPN48_class_I_Rep_3 7 471.796875 2 471.797143 941.579734 0.26632 0.00012565 -0.4354 -0.00020542 -0.16908 -7.9772E-05 471.79679398705923 69.593 1.0343 73.106 72.694 73.728 3.5129 173 82 3 0 0 0 0.82752 1 16145 16145 4.756 0 1 558900 52102 4649 32530 32547 59987 59987 0.10660699251184269 VVELAVKEHK 10 Unmodified _VVELAVKEHK_ 0 0 0 nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT nc|ENSG00000122966|O14578-3|CIT nc|ENSG00000122966|O14578-3|CIT MULTI-MSMS UPN47_class_I_Rep_2 3 576.3421630859375 2 576.342781 1150.67101 0.63493 0.00036594 -0.237 -0.00013659 0.39794 0.00022935 576.3423919975356 107.89 0.27065 111.42 111.35 111.62 3.5345 78 32 4 0 0 0 0.54148 1 26149 26149 6.6304 1.3335 1 13481000 52103 2404 32531 32548 59988 59988 0.10169962948521061 VVELLMLP 8 Unmodified _VVELLMLP_ 0 0 0 ENST00000407450.1_1_6:118774123-118774444:-|nuORF ENST00000407450.1_1_6:118774123-118774444:-|nuORF ENST00000407450.1_1_6:118774123-118774444:-|nuORF MSMS UPN48_class_I_Rep_3 7 457.2640075683594 2 457.274989 912.535426 NaN NaN NaN NaN NaN NaN NaN 70.437 1 73.956 73.456 74.456 3.5185 0 0 0 0.40604 1 16297 16297 2.5775 0.51773 1 52104 6616 32532 32549 59989 59989 0.07565971833355434 VVEQLMTV 8 Unmodified _VVEQLMTV_ 0 0 0 REV__Tigger16a_dup541|chr5:56854880-56854974:+|1.2979714305826222|0.0407411669947978|4.99|151.0|4|1|anti-sense REV__Tigger16a_dup541|chr5:56854880-56854974:+|1.2979714305826222|0.0407411669947978|4.99|151.0|4|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 459.751953125 2 459.751879 917.489204 -0.66394 -0.00030525 1.1878 0.00054608 0.52383 0.00024083 459.7518794344643 36.803 0.59815 40.05 39.713 40.311 3.247 60 42 2 0 0 0 0.82752 1 6918 6918 0.69038 0 1 54305 + 52105 32592 32533 32550 59990 59990 0.027159069312801876 VVETGILVL 9 Unmodified _VVETGILVL_ 0 0 0 L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|47|1|anti-sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|47|1|anti-sense L1M4_dup10230|chr9:125775353-125776539:-|2.0717510794392857|0.0215736394045209|6.59|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 471.7966003417969 2 471.797143 941.579734 0.13268 6.26E-05 -0.63597 -0.00030005 -0.50329 -0.00023745 471.7967166813857 69.822 1.0491 73.281 72.772 73.821 3.4598 166 80 3 0 0 0 0.35081 1 16250 16250 10.824 0 1 373950 52106 8817 32534 32551 59991 59991 0.10660699251184269 VVETSSLSSVT 11 Unmodified _VVETSSLSSVT_ 0 0 0 nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1 nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-4|SBNO1 MSMS UPN47_class_I_Rep_3 4 555.260498046875 2 554.790244 1107.56593 NaN NaN NaN NaN NaN NaN NaN 15.527 1 18.893 18.393 19.393 3.3659 0 0 0 0.38417 1 812 812 0 0 1 52107 3151 32535 32552 59992 59992 0.016453769614599878 VVEVVPIQ 8 Unmodified _VVEVVPIQ_ 0 0 0 REV__L1ME4b_dup21648|chr22:29347591-29348105:+|1.1067031627186918|0.0881570760004288|3.65|151.0|22|1|anti-sense REV__L1ME4b_dup21648|chr22:29347591-29348105:+|1.1067031627186918|0.0881570760004288|3.65|151.0|22|1|anti-sense MSMS UPN46_class_I_Rep_3 1 441.7696533203125 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 59.22 1 59.22 58.72 59.72 0 0 0 0 0.40746 1 13079 13079 0.69038 0 1 + 52108 28285 32536 32553 59993 59993 0.07671857045625075 VVFFALFI 8 Unmodified _VVFFALFI_ 0 0 0 REV__nc|ENSG00000183579|Q9ULT6-2|ZNRF3 REV__nc|ENSG00000183579|Q9ULT6-2|ZNRF3 MSMS UPN48_class_I_Rep_1 5 478.286865234375 2 478.286214 954.557876 NaN NaN NaN NaN NaN NaN NaN 33.115 1 36.635 36.135 37.135 3.5201 0 0 0 0.40738 1 5123 5123 0.79363 0 1 + 52109 20791 32537 32554 59994 59994 0.07877939293257441 VVFFVLKHQRR 11 Unmodified _VVFFVLKHQRR_ 0 0 0 REV__nc|ENSG00000196266|Q5JRS4|OR10J3 REV__nc|ENSG00000196266|Q5JRS4|OR10J3 MULTI-MSMS UPN48_class_I_Rep_2 6 476.9586486816406 3 476.957734 1427.85137 0.2252 0.00010741 0.93958 0.00044814 1.1648 0.00055555 476.9581502087175 104.43 0.18211 108.13 108.08 108.26 3.6991 32 25 2 0 0 0 0.65674 1 24749 24749 2.6312 0.88896 1 4935300 + 52110 32088 32538 32555 59995 59995 0.15456106395981806 VVFFVLKHQRR 11 Unmodified _VVFFVLKHQRR_ 0 0 0 REV__nc|ENSG00000196266|Q5JRS4|OR10J3 REV__nc|ENSG00000196266|Q5JRS4|OR10J3 MULTI-SECPEP UPN48_class_I_Rep_2 6 476.62274169921875 3 476.957734 1427.85137 0.2252 0.00010741 0.83276 0.00039719 1.058 0.0005046 476.95814516460763 104.33 0.11151 108.03 107.97 108.08 3.6991 20 14 2 0 0 0 22.551 1 24673 24673 1.3296 0.11481 1 5650900 + 52111 32088 32538 32555 59996 59996 0.15456106395981806 VVFFWVVA 8 Unmodified _VVFFWVVA_ 0 0 0 ENST00000382361.7_1_7:5645533-5645848:+|nuORF ENST00000382361.7_1_7:5645533-5645848:+|nuORF ENST00000382361.7_1_7:5645533-5645848:+|nuORF MSMS UPN46_class_I_Rep_3 1 483.776611328125 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 119.55 1 119.55 119.05 120.05 0 0 0 0 0.40738 1 29717 29717 0.79363 0 1 52112 6499 32539 32556 59997 59997 0.05332768633456908 VVFHWPRN 8 Unmodified _VVFHWPRN_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;ENSG00000048707.15,VPS13D,chr1,+,I60.1,12385374,12386184|35|4.32|1|intron nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS UPN48_class_I_Rep_3 7 527.7825317382812 2 527.782693 1053.55083 NaN NaN NaN NaN NaN NaN NaN 24.799 1 28.568 28.068 29.068 3.769 0 0 0 0.40738 1 2925 2925 0.79363 0 1 52113 897 32540 32557 59998 59998 0.026200194654165898 VVFICITLI 9 Unmodified _VVFICITLI_ 0 0 0 L1MB8_dup1335|chr2:39098899-39099568:+|2.1004006624811087|0.0137824210503893|7.25|151.0|43|2|anti-sense L1MB8_dup1335|chr2:39098899-39099568:+|2.1004006624811087|0.0137824210503893|7.25|151.0|43|2|anti-sense L1MB8_dup1335|chr2:39098899-39099568:+|2.1004006624811087|0.0137824210503893|7.25|151.0|43|2|anti-sense MSMS UPN48_class_I_Rep_3 7 510.8138122558594 2 510.811739 1019.60893 NaN NaN NaN NaN NaN NaN NaN 47.697 1 51.331 50.831 51.831 3.6339 0 0 0 0.1724 1 9386 9386 18.135 0 1 52114 10938 32541 32558 59999 59999 0.09990520275823656 VVFKLIKPDL 10 Unmodified _VVFKLIKPDL_ 0 0 0 REV__ENSG00000173530|ENST00000312584|TNFRSF10D REV__ENSG00000173530|ENST00000312584|TNFRSF10D MSMS UPN48_class_I_Rep_3 7 586.3778076171875 2 586.376092 1170.73763 NaN NaN NaN NaN NaN NaN NaN 31.884 1 35.585 35.085 36.085 3.7015 0 0 0 0.53105 1 4776 4776 0.40072 0 1 + 52115 20487 32542 32559 60000 60000 0.15909198510439637 VVFKVWAC 8 Unmodified _VVFKVWAC_ 0 0 0 L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|55|1|anti-sense L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|55|1|anti-sense L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|55|1|anti-sense MSMS UPN46_class_I_Rep_3 1 476.32635498046875 2 476.259674 950.504795 NaN NaN NaN NaN NaN NaN NaN 33.123 1 33.123 32.623 33.623 0 0 0 0 0.40604 1 5756 5756 2.5775 0.27475 1 52116 8502 32543 32560 60001 60001 0.027562382389533013 VVFLSEYVEE 10 Unmodified _VVFLSEYVEE_ 0 0 0 ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B MULTI-MSMS UPN47_class_I_Rep_1 2 607.3043212890625 2 607.302987 1212.59142 0.39869 0.00024212 0.26062 0.00015827 0.65931 0.0004004 607.8043332751442 56.918 0.55784 60.376 60.212 60.77 3.4572 92 49 2 0 0 0 0.56033 1 13055 13055 3.5965 1.098 1 193010 52117 1009 32544 32561 60002 60002 -0.0063714851612530765 VVFLSEYVEE 10 Unmodified _VVFLSEYVEE_ 0 0 0 ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B MULTI-MSMS UPN47_class_I_Rep_2 3 607.3031005859375 2 607.302987 1212.59142 0.519 0.00031519 -0.40114 -0.00024361 0.11786 7.1574E-05 607.804116773423 57.173 0.74513 60.464 60.189 60.934 3.2912 134 63 3 0 0 0 0.56033 2 13129 13129;13252 3.5965 1.098 1 162980 52118 1009 32544 32561 60003;60004 60003 -0.0063714851612530765 VVFLSEYVEE 10 Unmodified _VVFLSEYVEE_ 0 0 0 ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B MULTI-MSMS UPN48_class_I_Rep_1 5 607.8057861328125 2 607.302987 1212.59142 0.51828 0.00031475 0.9383 0.00056983 1.4566 0.00088459 607.3033311840616 57.161 0.75541 60.655 60.374 61.129 3.4942 106 65 2 0 0 0 0.54078 2 12343 12343;12346 6.7232 2.3939 1 247020 52119 1009 32544 32561 60005;60006 60005 -0.0063714851612530765 VVFLSEYVEE 10 Unmodified _VVFLSEYVEE_ 0 0 0 ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B MULTI-MSMS UPN48_class_I_Rep_2 6 607.3034057617188 2 607.302987 1212.59142 0.59346 0.00036041 0.90655 0.00055055 1.5 0.00091096 607.3033421142381 57.126 0.69511 60.64 60.44 61.135 3.5142 107 59 2 0 0 0 0.54078 1 12375 12375 6.7232 0.53132 1 259610 52120 1009 32544 32561 60007 60007 -0.0063714851612530765 VVFLVLNYI 9 Unmodified _VVFLVLNYI_ 0 0 0 L1PREC2_dup3344|chr7:64799948-64801817:-|1.1346640081420187|0.3484464743023305|1.7|151.0|128|3|anti-sense L1PREC2_dup3344|chr7:64799948-64801817:-|1.1346640081420187|0.3484464743023305|1.7|151.0|128|3|anti-sense L1PREC2_dup3344|chr7:64799948-64801817:-|1.1346640081420187|0.3484464743023305|1.7|151.0|128|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.3305053710938 2 540.328611 1078.64267 NaN NaN NaN NaN NaN NaN NaN 84.239 1 84.239 83.739 84.739 0 0 0 0 0.39518 1 20032 20032 1.8442 0 1 52121 15442 32545 32562 60008 60008 0.1064926503922834 VVFMIKSE 8 Unmodified _VVFMIKSE_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2;REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000164082|ENST00000395052|GRM2 MSMS UPN48_class_I_Rep_1 5 476.76434326171875 2 476.762246 951.50994 NaN NaN NaN NaN NaN NaN NaN 41.158 1 44.665 44.165 45.165 3.506 0 0 0 0.40404 1 7469 7469 5.2307 0 1 + 52122 20032;21149 32546 32563 60009 60009 0.03224497310930019 VVFPCILL 8 Unmodified _VVFPCILL_ 0 0 0 REV__HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|84|3|anti-sense REV__HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|84|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.27130126953125 2 452.27225 902.529947 -0.28521 -0.00012899 -0.6013 -0.00027195 -0.88651 -0.00040095 452.2711651801725 20.271 0.033768 20.271 20.251 20.284 0 5 3 2 0 0 0 0.82752 1 2081 2081 0.79363 0 1 18920 + 52123 23393 32547 32564 60010 60010 0.07478293041538109 VVFPCILL 8 Unmodified _VVFPCILL_ 0 0 0 REV__HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|84|3|anti-sense REV__HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|84|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 452.27225 902.529947 -0.28521 -0.00012899 -0.6013 -0.00027195 -0.88651 -0.00040095 452.2711651801725 20.271 0.033768 20.271 20.251 20.284 0 -0.14594 0.0055889 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 18920 + 52124 23393 32547 32564 0.07478293041538109 VVFPCILL 8 Unmodified _VVFPCILL_ 0 0 0 REV__HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|84|3|anti-sense REV__HAL1_dup20355|chr17:36966921-36968270:-|1.3789845183079623|0.0425011027825294|5.02|151.0|84|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 452.27225 902.529947 -1.0405 -0.00047058 -6.8508 -0.0030984 -7.8913 -0.003569 452.2692195942028 17.205 0.027565 20.563 20.552 20.579 3.3581 0.14594 -6.4118E-05 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 23618 + 52125 23393 32547 32564 0.07478293041538109 VVFRKITA 8 Unmodified _VVFRKITA_ 0 0 0 REV__ENSG00000239305|ENST00000237455|RNF103 REV__ENSG00000239305|ENST00000237455|RNF103 MSMS UPN46_class_I_Rep_3 1 467.2958679199219 2 467.297645 932.580737 NaN NaN NaN NaN NaN NaN NaN 91.821 1 91.821 91.321 92.321 0 0 0 0 0.40604 1 22195 22195 2.5775 0 1 + 52126 21321 32548 32565 60011 60011 0.11174958410731506 VVFVKAHM 8 Unmodified _VVFVKAHM_ 0 0 0 REV__L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|312|3|anti-sense REV__L1PBa_dup2093|chr21:14503881-14508847:+|4.4550568946799|0.1739513782887496|4.68|151.0|312|3|anti-sense MSMS UPN47_class_I_Rep_1 2 465.765625 2 465.765123 929.515694 NaN NaN NaN NaN NaN NaN NaN 44.607 1 48.304 47.804 48.804 3.6975 0 0 0 0.40364 1 9290 9290 5.7604 1.0044 1 + 52127 30646 32549 32566 60012 60012 0.048116406132407974 VVGAERLR 8 Unmodified _VVGAERLR_ 0 0 0 nc|ENSG00000170624|Q92629-3|SGCD;nc|ENSG00000170624|Q92629|SGCD;ENSG00000170624|ENST00000337851|SGCD nc|ENSG00000170624|Q92629-3|SGCD nc|ENSG00000170624|Q92629-3|SGCD MULTI-MSMS UPN46_class_I_Rep_3 1 450.2751159667969 2 450.274701 898.534849 0.1856 8.3571E-05 0.037517 1.6893E-05 0.22312 0.00010046 450.2747009109044 88.62 0.19737 88.62 88.574 88.771 0 38 23 2 0 0 0 0.82752 1 21292 21292 0.79363 0 1 246710 52128 4481 32550 32567 60013 60013 0.08152313228515595 VVGAERLR 8 Unmodified _VVGAERLR_ 0 0 0 nc|ENSG00000170624|Q92629-3|SGCD;nc|ENSG00000170624|Q92629|SGCD;ENSG00000170624|ENST00000337851|SGCD nc|ENSG00000170624|Q92629-3|SGCD nc|ENSG00000170624|Q92629-3|SGCD MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 450.274701 898.534849 -0.19987 -8.9997E-05 0.2162 9.7349E-05 0.016328 7.352E-06 450.27461199400955 85.514 0.10547 88.885 88.866 88.971 3.3716 0.082855 3.2511E-05 NaN 0.79363 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 382770 52129 4481 32550 32567 0.08152313228515595 VVGAERLR 8 Unmodified _VVGAERLR_ 0 0 0 nc|ENSG00000170624|Q92629-3|SGCD;nc|ENSG00000170624|Q92629|SGCD;ENSG00000170624|ENST00000337851|SGCD nc|ENSG00000170624|Q92629-3|SGCD nc|ENSG00000170624|Q92629-3|SGCD MULTI-MATCH UPN48_class_I_Rep_1 5 2 450.274701 898.534849 0.02045 9.2081E-06 0.31072 0.00013991 0.33117 0.00014912 450.27473859444933 85.258 0.090363 88.864 88.825 88.916 3.6059 0.061673 0.00011763 NaN 0.79363 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 101890 52130 4481 32550 32567 0.08152313228515595 VVGAGIGG 8 Unmodified _VVGAGIGG_ 0 0 0 ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L;ENST00000503240.5_1_5:148742189-148742453:+|nuORF ENST00000505669.5_1_5:148737686-148748214:+|nuORF ENST00000505669.5_1_5:148737686-148748214:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 630.38720703125 1 629.361702 628.354425 0.47792 0.00030078 1.4574 0.00091722 1.9353 0.001218 629.362328555654 69.719 0.35323 73.174 72.899 73.252 3.4548 34 26 2 0 0 0 0.82752 1 16189 16189 0 0 1 96858 52131 3416 32551 32568 60014 60014 0.025382145716775995 VVGAGIGG 8 Unmodified _VVGAGIGG_ 0 0 0 ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L;ENST00000503240.5_1_5:148742189-148742453:+|nuORF ENST00000505669.5_1_5:148737686-148748214:+|nuORF ENST00000505669.5_1_5:148737686-148748214:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 1 629.361702 628.354425 0.66389 0.00041783 1.1818 0.00074379 1.8457 0.0011616 629.362375539701 73.052 0.37946 73.052 72.895 73.274 0 -0.06056 -3.7629E-05 NaN 0 49 40 2 NaN NaN NaN NaN 0 NaN NaN 0 147320 52132 3416 32551 32568 0.025382145716775995 VVGAGRRQ 8 Unmodified _VVGAGRRQ_ 0 0 0 HAL1_dup7484|chr5:79617361-79618228:-|3.268834159536243|0.1401221435678105|4.54|151.0|24|3|sense HAL1_dup7484|chr5:79617361-79618228:-|3.268834159536243|0.1401221435678105|4.54|151.0|24|3|sense HAL1_dup7484|chr5:79617361-79618228:-|3.268834159536243|0.1401221435678105|4.54|151.0|24|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 421.75128173828125 2 421.751393 841.488233 -0.59358 -0.00025034 0.69752 0.00029418 0.10395 4.384E-05 421.75149193976 68.172 0.45533 71.37 71.195 71.65 3.1977 42 29 2 0 0 0 0.82752 1 16630 16630 0.79363 0 1 61308 52133 7911 32552 32569 60015 60015 0.061148733972345326 VVGAGRRQ 8 Unmodified _VVGAGRRQ_ 0 0 0 HAL1_dup7484|chr5:79617361-79618228:-|3.268834159536243|0.1401221435678105|4.54|151.0|24|3|sense HAL1_dup7484|chr5:79617361-79618228:-|3.268834159536243|0.1401221435678105|4.54|151.0|24|3|sense HAL1_dup7484|chr5:79617361-79618228:-|3.268834159536243|0.1401221435678105|4.54|151.0|24|3|sense MSMS UPN47_class_I_Rep_3 4 421.7513427734375 2 421.751393 841.488233 NaN NaN NaN NaN NaN NaN NaN 68.901 1 72.099 71.599 72.599 3.1977 0 0 0 0.40738 1 16770 16770 0.79363 0 1 52134 7911 32552 32569 60016 60016 0.061148733972345326 VVGAPQKI 8 Unmodified _VVGAPQKI_ 0 0 0 ENST00000567409.1_1_16:31366575-31368500:+|nuORF;ENSG00000140678|ENST00000268296|ITGAX ENST00000567409.1_1_16:31366575-31368500:+|nuORF ENST00000567409.1_1_16:31366575-31368500:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 406.26690673828125 2 406.255446 810.496338 -0.4668 -0.00018964 0.25622 0.00010409 -0.21058 -8.5547E-05 406.2555045072265 31.287 0.30712 35.016 34.88 35.187 3.7293 25 21 2 0 0 0 0.82752 1 5252 5252 2.3027 0 1 28720 52135 3188 32553 32570 60017 60017 0.08351007594001203 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS UPN46_class_I_Rep_3 1 406.24835205078125 2 406.248486 810.48242 0.056505 2.2955E-05 0.10333 4.1979E-05 0.15984 6.4934E-05 406.2484533372605 83.17 0.14357 83.17 83.062 83.206 0 33 11 3 0 0 0 0.82752 1 19751 19751 0.69038 0 1 2140600 52136 5501 32554 32571 60018 60018 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS UPN47_class_I_Rep_1 2 406.2484436035156 2 406.248486 810.48242 0.0058 2.3563E-06 0.18274 7.4239E-05 0.18854 7.6596E-05 406.2486403058176 79.361 1.0462 82.807 82.344 83.39 3.4456 401 106 5 0 0 0 0.82752 1 19867 19867 2.5775 0 1 14557000 52137 5501 32554 32571 60019 60019 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS UPN47_class_I_Rep_3 4 406.2485046386719 2 406.248486 810.48242 -0.63227 -0.00025686 1.045 0.00042452 0.41271 0.00016766 406.2488068618511 85.838 0.14025 89.21 89.177 89.317 3.3716 27 12 3 0 0 0 0.82752 1 21510 21510 0.69038 0 1 1204600 52138 5501 32554 32571 60020 60020 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS UPN48_class_I_Rep_1 5 406.2489929199219 2 406.248486 810.48242 -0.12182 -4.949E-05 0.96509 0.00039207 0.84327 0.00034258 406.248948541383 81.752 0.19579 85.328 85.248 85.443 3.5753 33 21 2 0 0 0 0.82752 1 19496 19496 0.69038 0 1 221270 52139 5501 32554 32571 60021 60021 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS UPN48_class_I_Rep_2 6 406.2484436035156 2 406.248486 810.48242 0.077478 3.1475E-05 0.082421 3.3483E-05 0.1599 6.4959E-05 406.24861176299316 79.056 1.2148 82.689 82.241 83.455 3.6331 494 140 5 0 0 0 0.82752 3 18861 18861;18900;18964 2.5775 0 1 21710000 52140 5501 32554 32571 60022;60023;60024 60022 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS UPN48_class_I_Rep_3 7 406.2486572265625 2 406.248486 810.48242 0.13475 5.4743E-05 0.019694 8.0006E-06 0.15445 6.2743E-05 406.2485905352695 79.12 1.2185 82.762 82.257 83.476 3.6423 552 150 5 0 0 0 0.82752 2 18636 18636;18673 2.5775 0 1 24320000 52141 5501 32554 32571 60025;60026 60025 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 406.248486 810.48242 -0.49543 -0.00020127 1.1727 0.00047641 0.67729 0.00027515 406.2488731336232 85.407 0.062836 88.84 88.823 88.886 3.4329 -0.23694 7.9138E-05 NaN 0.69038 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 189030 52142 5501 32554 32571 0.06959774885569914 VVGAPRGR 8 Unmodified _VVGAPRGR_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|1|intron;ENST00000463554.5_1_2:233599907-233635753:+|nuORF;ENSG00000204120.16,GIGYF2,chr2,+,I17.1,232761437,232764435|36|7.68|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|3|intron;ENSG00000204120.16,GIGYF2,chr2,+,I32.1,232806658,232809719|26|7.57|4|intron nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 406.248486 810.48242 -0.12989 -5.2766E-05 0.21095 8.5697E-05 0.081063 3.2932E-05 406.24981139219506 85.576 0.020477 89.182 89.164 89.185 3.6059 0.10438 -0.0007023 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 14242 52143 5501 32554 32571 0.06959774885569914 VVGDTLILL 9 Unmodified _VVGDTLILL_ 0 0 0 REV__ENSG00000178773|ENST00000319518|CPNE7 REV__ENSG00000178773|ENST00000319518|CPNE7 MSMS UPN47_class_I_Rep_3 4 471.7957458496094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 76.33 1 79.587 79.087 80.087 3.2573 0 0 0 0.39428 1 18973 18973 2.0598 0 1 + 52144 20659 32555 32572 60027 60027 0.10660699251207006 VVGEYFCHCF 10 Unmodified _VVGEYFCHCF_ 0 0 0 ENST00000587299.1_1_17:40672405-40673135:+|nuORF;ENST00000592831.1_1_17:40672405-40672870:+|nuORF ENST00000587299.1_1_17:40672405-40673135:+|nuORF ENST00000587299.1_1_17:40672405-40673135:+|nuORF MSMS UPN46_class_I_Rep_3 1 401.7601013183594 3 401.836905 1202.48889 NaN NaN NaN NaN NaN NaN NaN 118.1 1 118.1 117.6 118.6 0 0 0 0 0.53105 1 29302 29302 0.13989 0.017027 1 52145 7591 32556 32573 60028 60028 -0.10425836060244364 VVGFFFFF 8 Unmodified _VVGFFFFF_ 0 0 0 ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron ENSG00000126653.18,NSRP1,chr17,+,I7.1,30150667,30154403|44|6.46|1|intron MSMS UPN46_class_I_Rep_3 1 505.25518798828125 2 505.262739 1008.51093 NaN NaN NaN NaN NaN NaN NaN 35.162 1 35.162 34.662 35.662 0 0 0 0 0.37152 1 6368 6368 17.087 5.9721 1 52146 2544 32557 32574 60029 60029 0.007010797421457937 VVGFLALLY 9 Unmodified _VVGFLALLY_ 0 0 0 REV__ENST00000322213.8_1_X:53406894-53407002:-|nuORF REV__ENST00000322213.8_1_X:53406894-53407002:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.802490234375 2 497.802229 993.589904 NaN NaN NaN NaN NaN NaN NaN 45.155 1 48.671 48.171 49.171 3.5162 0 0 0 0.39326 1 8678 8678 2.3027 0 1 + 52147 21745 32558 32575 60030 60030 0.09285306976414631 VVGHEALP 8 Unmodified _VVGHEALP_ 0 0 0 CON__Q1RMK2 CON__Q1RMK2 CON__Q1RMK2 MULTI-MSMS UPN46_class_I_Rep_3 1 411.2286071777344 2 411.229428 820.444303 0.06978 2.8696E-05 -1.6922 -0.00069587 -1.6224 -0.00066717 411.22867450255495 107.88 0.10371 107.88 107.81 107.91 0 13 11 2 0 0 0 0.82752 1 26325 26325 2.8892 0 1 4749400 + 52148 646 32559 32576 60031 60031 0.026898441802245543 VVGHEALP 8 Unmodified _VVGHEALP_ 0 0 0 CON__Q1RMK2 CON__Q1RMK2 CON__Q1RMK2 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 411.229428 820.444303 0.06978 2.8696E-05 -1.6922 -0.00069587 -1.6224 -0.00066717 411.22867450255495 107.88 0.10371 107.88 107.81 107.91 0 0 0 NaN 2.8892 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4749400 + 52149 646 32559 32576 0.026898441802245543 VVGKKNRLKV 10 Unmodified _VVGKKNRLKV_ 0 0 0 REV__MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|36|2|anti-sense REV__MER4-int_dup2523|chr15:66470119-66470754:-|1.080834215359558|0.0537405497905877|4.33|151.0|36|2|anti-sense MSMS UPN48_class_I_Rep_2 6 570.8455810546875 2 570.882407 1139.75026 NaN NaN NaN NaN NaN NaN NaN 41.836 1 45.587 45.087 46.087 3.7508 0 0 0 0.53105 1 7679 7679 0 0 1 + 52150 31280 32560 32577 60032 60032 0.18597654693280674 VVGKRVYVA 9 Unmodified _VVGKRVYVA_ 0 0 0 REV__L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|167|2|anti-sense REV__L1PB1_dup127|chr1:53814387-53817643:+|1.2884723371868338|0.0181187798525387|6.15|150.0|167|2|anti-sense MSMS UPN48_class_I_Rep_1 5 495.8060302734375 2 495.808377 989.6022 NaN NaN NaN NaN NaN NaN NaN 82.116 1 85.691 85.191 86.191 3.5753 0 0 0 0.40038 1 19601 19601 0.6015 0 1 + 52151 30344 32561 32578 60033 60033 0.10698343439457858 VVGNGYKY 8 Unmodified _VVGNGYKY_ 0 0 0 MER1A_dup99|chr1:93320371-93320902:-|1.156664057770874|0.0350118846166145|5.05|150.0|25|1|anti-sense MER1A_dup99|chr1:93320371-93320902:-|1.156664057770874|0.0350118846166145|5.05|150.0|25|1|anti-sense MER1A_dup99|chr1:93320371-93320902:-|1.156664057770874|0.0350118846166145|5.05|150.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 450.2342834472656 2 450.23471 898.454868 NaN NaN NaN NaN NaN NaN NaN 46.262 1 46.262 45.762 46.762 0 0 0 0 0.39408 1 9472 9472 10.183 0 1 52152 15810 32562 32579 60034 60034 0.001578268346634104 VVGPKNKT 8 Unmodified _VVGPKNKT_ 0 0 0 REV__AluJb_dup3231|chr1:35838970-35839242:-|2.2140867663287653|0.2830038031644736|2.97|151.0|1|1|sense REV__AluJb_dup3231|chr1:35838970-35839242:-|2.2140867663287653|0.2830038031644736|2.97|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 421.7574157714844 2 421.758352 841.502152 -0.27686 -0.00011677 -0.39088 -0.00016486 -0.66774 -0.00028162 421.75820273326053 24.591 0.30633 24.591 24.538 24.844 0 43 31 2 0 0 0 0.82752 1 3316 3316 1.8442 0 1 77695 + 52153 16938 32563 32580 60035 60035 0.07506106105654453 VVGPKVRK 8 Unmodified _VVGPKVRK_ 0 0 0 nc|ENSG00000204681|Q9UBS5-5|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 nc|ENSG00000204681|Q9UBS5-5|GABBR1 nc|ENSG00000204681|Q9UBS5-5|GABBR1 MSMS UPN48_class_I_Rep_3 7 441.77001953125 2 441.797812 881.581071 NaN NaN NaN NaN NaN NaN NaN 81.815 1 85.501 85.001 86.001 3.685 0 0 0 0.40604 1 19381 19381 2.5775 0 1 52154 5537 32564 32581 60036 60036 0.13554378130606892 VVGPLGLLI 9 Unmodified _VVGPLGLLI_ 0 0 0 REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|252|2|anti-sense REV__HERVL-int_dup965|chr6:83010975-83016556:-|2.010810978809293|0.116930470392656|4.1|150.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7995910644531 2 440.796946 879.57934 -0.26608 -0.00011729 3.2317 0.0014245 2.9656 0.0013072 440.7995167570957 52.234 0.70807 55.439 54.947 55.655 3.2055 68 44 2 0 0 0 0.50015 1 11725 11725 0.6015 0 1 117680 + 52155 23901 32565 32582 60037 60037 0.1347332432201256 VVGPNRRA 8 Unmodified _VVGPNRRA_ 0 0 0 REV__ENSG00000055950|ENST00000318364|MRPL43 REV__ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS UPN47_class_I_Rep_1 2 434.7590637207031 2 434.759218 867.503883 0.05097 2.216E-05 -0.27646 -0.00012019 -0.22549 -9.8035E-05 434.7590411553815 78.565 0.76173 82.01 81.662 82.423 3.4456 163 73 3 0 0 0 0.82752 1 19573 19573 5.2307 0 1 458340 + 52156 17701 32566 32583 60038 60038 0.06483159914273529 VVGPQLIRSFL 11 Unmodified _VVGPQLIRSFL_ 0 0 0 REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|124|3|sense REV__HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|124|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 614.8745727539062 2 614.874248 1227.73394 0.54079 0.00033252 0.25849 0.00015894 0.79927 0.00049145 614.8743019321124 108.65 0.41454 112.29 112.16 112.58 3.6355 128 43 4 0 0 0 0.35213 1 26772 26772 11.495 1.3441 1 55475000 + 52157 23524 32567 32584 60039 60039 0.12918528736554435 VVGPVATAP 9 Unmodified _VVGPVATAP_ 0 0 0 REV__ENSG00000157657.14,ZNF618,chr9,+,I12.1,114028973,114030803|23|4.42|1|intron REV__ENSG00000157657.14,ZNF618,chr9,+,I12.1,114028973,114030803|23|4.42|1|intron MULTI-MSMS UPN47_class_I_Rep_2 3 405.739501953125 2 405.739628 809.464704 -0.52959 -0.00021487 0.76638 0.00031095 0.23679 9.6077E-05 405.73975897582545 55.394 0.62376 58.705 58.476 59.1 3.3102 55 34 2 0 0 0 0.40174 1 12554 12554 7.9102 0 1 59485 + 52158 19826 32568 32585 60040 60040 0.05235014840036456 VVGQNLYNFA 10 Unmodified _VVGQNLYNFA_ 0 0 0 REV__nc|ENSG00000133704|O15397-2|IPO8 REV__nc|ENSG00000133704|O15397-2|IPO8 MULTI-MSMS UPN46_class_I_Rep_3 1 562.790283203125 2 562.790381 1123.56621 0.40673 0.0002289 -0.16438 -9.2514E-05 0.24234 0.00013639 562.7902490836666 47.154 0.43433 47.154 46.92 47.355 0 66 43 2 0 0 0 0.53654 1 9700 9700 7.2892 0 1 208930 + 52159 19065 32569 32586 60041 60041 0.009368414719347129 VVGQNLYNFA 10 Unmodified _VVGQNLYNFA_ 0 0 0 REV__nc|ENSG00000133704|O15397-2|IPO8 REV__nc|ENSG00000133704|O15397-2|IPO8 MULTI-MATCH UPN47_class_I_Rep_2 3 2 562.790381 1123.56621 0.14657 8.2486E-05 1.6522 0.00092984 1.7988 0.0010123 562.7911041913553 43.671 0.19144 47.029 46.936 47.128 3.358 -0.062276 0.0018882 NaN 7.2892 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 31778 + 52160 19065 32569 32586 0.009368414719347129 VVGRKGILF 9 Unmodified _VVGRKGILF_ 0 0 0 REV__MER68_dup337|chr4:67511473-67512001:+|1.139463093691607|0.2465075953673497|2.21|151.0|2|1|sense REV__MER68_dup337|chr4:67511473-67512001:+|1.139463093691607|0.2465075953673497|2.21|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 494.8319091796875 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 17.905 1 17.905 17.405 18.405 0 0 0 0 0.40038 1 1481 1481 0.6015 0 1 + 52161 31539 32570 32587 60042 60042 0.12862933819144473 VVGTLLLP 8 Unmodified _VVGTLLLP_ 0 0 0 ENSG00000259803|ENST00000682282|SLC22A31;nc|ENSG00000259803|A6NKX4|SLC22A31 ENSG00000259803|ENST00000682282|SLC22A31 ENSG00000259803|ENST00000682282|SLC22A31 MSMS UPN47_class_I_Rep_2 3 406.26690673828125 2 406.268022 810.521491 NaN NaN NaN NaN NaN NaN NaN 33.284 1 36.724 36.224 37.224 3.4398 0 0 0 0.40746 1 5877 5877 0.69038 0 1 52162 5775 32571 32588 60043 60043 0.10865062396555913 VVGVQYYFWA 10 Unmodified _VVGVQYYFWA_ 0 0 0 L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|141|3|anti-sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|141|3|anti-sense L1PREC2_dup1574|chr3:171715764-171718052:-|1.0659266236578069|0.0426372390521683|4.64|151.0|141|3|anti-sense MSMS UPN48_class_I_Rep_1 5 616.30908203125 2 616.310949 1230.60735 NaN NaN NaN NaN NaN NaN NaN 46.671 1 50.19 49.69 50.69 3.5192 0 0 0 0.53105 1 9139 9139 1.6526 0 1 52163 15418 32572 32589 60044 60044 0.0012660251143188361 VVHGAASVLVT 11 Unmodified _VVHGAASVLVT_ 0 0 0 REV__HERVL-int_dup2251|chr20:1157339-1158193:-|1.6830694123408303|0.3531946945252993|2.25|151.0|59|3|anti-sense REV__HERVL-int_dup2251|chr20:1157339-1158193:-|1.6830694123408303|0.3531946945252993|2.25|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.2686767578125 2 526.808574 1051.60259 NaN NaN NaN NaN NaN NaN NaN 114.13 1 117.76 117.26 118.26 3.6301 0 0 0 0.38417 1 27741 27741 1.3295 0.5359 1 + 52164 23882 32573 32590 60045 60045 0.07885718368675043 VVHILHIL 8 Unmodified _VVHILHIL_ 0 0 0 L1MEb_dup1341|chr14:35302435-35303671:-|1.5517911301733034|0.0958993648479033|4.02|151.0|73|3|anti-sense L1MEb_dup1341|chr14:35302435-35303671:-|1.5517911301733034|0.0958993648479033|4.02|151.0|73|3|anti-sense L1MEb_dup1341|chr14:35302435-35303671:-|1.5517911301733034|0.0958993648479033|4.02|151.0|73|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 471.7951965332031 2 472.308013 942.601472 -0.13841 -6.537E-05 -0.48272 -0.00022799 -0.62112 -0.00029336 472.30767925137866 46.382 0.66567 50.082 49.759 50.425 3.6999 59 44 2 0 0 0 0.72333 1 9752 9752 2.8892 0 1 90739 52165 12981 32574 32591 60046 60046 0.12787548790424808 VVHILHIL 8 Unmodified _VVHILHIL_ 0 0 0 L1MEb_dup1341|chr14:35302435-35303671:-|1.5517911301733034|0.0958993648479033|4.02|151.0|73|3|anti-sense L1MEb_dup1341|chr14:35302435-35303671:-|1.5517911301733034|0.0958993648479033|4.02|151.0|73|3|anti-sense L1MEb_dup1341|chr14:35302435-35303671:-|1.5517911301733034|0.0958993648479033|4.02|151.0|73|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 472.308013 942.601472 -0.061732 -2.9157E-05 -0.62689 -0.00029608 -0.68862 -0.00032524 472.30768273330074 46.965 0.24338 50.316 50.19 50.434 3.3515 0.11696 -0.00010892 NaN 6.3541 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 62593 52166 12981 32574 32591 0.12787548790424808 VVHLARNL 8 Unmodified _VVHLARNL_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.D2468Efs*23|1|0.04|ENSG00000123104|chr12:26400254-26400254|A/-|frameshift_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-SECPEP UPN46_class_I_Rep_3 1 460.782958984375 2 461.285069 920.555585 0.21538 9.9351E-05 0.20636 9.5193E-05 0.42174 0.00019454 461.285357221223 107.77 0.023727 107.77 107.76 107.78 0 4 2 2 0 0 0 0.72333 1 26291 26291 2.5775 0.27475 1 1386900 52167 2407 32575 32592 60047 60047 0.09212903608181477 VVHLLYLLII 10 Unmodified _VVHLLYLLII_ 0 0 0 REV__L1MEh_dup1670|chr9:132317985-132318429:-|1.2573883879721328|0.0546894787800151|4.52|151.0|25|2|anti-sense REV__L1MEh_dup1670|chr9:132317985-132318429:-|1.2573883879721328|0.0546894787800151|4.52|151.0|25|2|anti-sense MSMS UPN47_class_I_Rep_2 3 598.7140502929688 2 598.394285 1194.77402 NaN NaN NaN NaN NaN NaN NaN 112.09 1 115.61 115.11 116.11 3.5226 0 0 0 0.53105 1 27303 27303 0.45834 0.057624 1 + 52168 28798 32576 32593 60048 60048 0.1844207540714251 VVHLQSNIL 9 Unmodified _VVHLQSNIL_ 0 0 0 L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense L1MC4_dup20284|chr15:64869463-64870166:-|1.8618403170468456|0.0200910588896298|6.53|150.0|21|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.8025817871094 2 511.803291 1021.59203 -0.19276 -9.8653E-05 -0.11474 -5.8724E-05 -0.3075 -0.00015738 511.803022879563 40.495 0.63926 43.732 43.37 44.009 3.2372 48 38 2 0 0 0 0.49187 1 8198 8198 1.4819 0 1 66291 52169 11448 32577 32594 60049 60049 0.08209735714228827 VVHMKEHS 8 Unmodified _VVHMKEHS_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-11|TTN REV__nc|ENSG00000155657|Q8WZ42-11|TTN MSMS UPN47_class_I_Rep_1 2 483.646484375 2 483.744919 965.475285 NaN NaN NaN NaN NaN NaN NaN 87.978 1 91.634 91.134 92.134 3.6563 0 0 0 0.40581 1 21997 21997 2.8892 0.58649 1 + 52170 19771 32578 32595 60050 60050 -0.0088332577716983 VVHSSNFFFK 10 Unmodified _VVHSSNFFFK_ 0 0 0 L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.3137817382812 2 606.314023 1210.61349 0.48459 0.00029381 0.10534 6.3872E-05 0.58994 0.00035769 606.3137991056115 55.654 0.72986 59.162 58.785 59.515 3.5082 101 48 3 0 0 0 0.56078 1 11939 11939 3.2813 1.2216 1 208120 52171 14299 32579 32596 60051 60051 0.016611207429377828 VVHSSNFFFK 10 Unmodified _VVHSSNFFFK_ 0 0 0 L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.3146362304688 2 606.314023 1210.61349 0.61059 0.00037021 -0.45674 -0.00027693 0.15385 9.3283E-05 606.3136155007395 55.475 0.73784 59.031 58.807 59.545 3.5559 86 46 2 0 0 0 0.56078 1 11870 11870 3.2813 0 1 166650 52172 14299 32579 32596 60052 60052 0.016611207429377828 VVHSSNFFFK 10 Unmodified _VVHSSNFFFK_ 0 0 0 L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense L1PA4_dup10401|chr14:60908338-60914469:-|2.6907592170053136|0.098506755354698|4.77|151.0|298|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.315673828125 2 606.314023 1210.61349 0.44937 0.00027246 -0.1783 -0.00010811 0.27107 0.00016435 606.3138010397399 56.282 0.65878 59.825 59.499 60.158 3.5427 93 58 2 0 0 0 0.56118 1 12060 12060 2.9952 0 1 168770 52173 14299 32579 32596 60053 60053 0.016611207429377828 VVHTVSLHEI 10 Unmodified _VVHTVSLHEI_ 0 0 0 NUCB1-RUVBL2|1|fusion;nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 NUCB1-RUVBL2|1|fusion NUCB1-RUVBL2|1|fusion MULTI-MSMS UPN48_class_I_Rep_2 6 567.3197631835938 2 567.319306 1132.62406 0.39979 0.00022681 -0.31613 -0.00017935 0.083655 4.7459E-05 567.3190615782225 45.83 0.77603 49.588 49.175 49.951 3.7579 97 57 2 0 0 0 0.52562 1 8804 8804 8.7454 1.1365 1 172590 52174 4989 32580 32597 60054 60054 0.06305103397380662 VVHVLQEAY 9 Unmodified _VVHVLQEAY_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN48_class_I_Rep_2 6 529.287841796875 2 529.287474 1056.5604 0.50397 0.00026674 0.12328 6.5249E-05 0.62725 0.00033199 529.2875696383627 58.743 0.55887 62.242 61.903 62.462 3.4987 41 33 2 0 0 0 0.42249 1 12806 12806 6.7232 0 1 147400 + 52175 19023 32581 32598 60055 60055 0.03437742960295509 VVHVLQEAY 9 Unmodified _VVHVLQEAY_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 529.287474 1056.5604 0.50397 0.00026674 0.12328 6.5249E-05 0.62725 0.00033199 529.2875696383627 58.743 0.55887 62.242 61.903 62.462 3.4987 0.13417 -1.354E-05 NaN 6.7232 41 33 2 NaN NaN NaN NaN 0 NaN NaN 0 147400 + 52176 19023 32581 32598 0.03437742960295509 VVHVLSPLAP 10 Unmodified _VVHVLSPLAP_ 0 0 0 HAL1M8_dup2056|chr20:61991624-61993492:+|1.0760564848840526|0.1305529705792626|3.04|150.0|89|3|anti-sense HAL1M8_dup2056|chr20:61991624-61993492:+|1.0760564848840526|0.1305529705792626|3.04|150.0|89|3|anti-sense HAL1M8_dup2056|chr20:61991624-61993492:+|1.0760564848840526|0.1305529705792626|3.04|150.0|89|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.3153076171875 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.74 1 111.38 110.88 111.88 3.6313 0 0 0 0.53105 1 25982 25982 6.7232 1.4925 1 52177 7944 32582 32599 60056 60056 0.1034321023666962 VVHVSLGV 8 Unmodified _VVHVSLGV_ 0 0 0 REV__nc|ENSG00000176884|Q05586-2|GRIN1 REV__nc|ENSG00000176884|Q05586-2|GRIN1 MSMS UPN48_class_I_Rep_2 6 405.24859619140625 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 84.321 1 88.015 87.515 88.515 3.6937 0 0 0 0.40738 1 20069 20069 0.79363 0 1 + 52178 20598 32583 32600 60057 60057 0.06878721076964212 VVHYQYALP 9 Unmodified _VVHYQYALP_ 0 0 0 ERV3-16A3_I-int_dup872|chr2:199772560-199775177:-|1.035818197785191|0.0952928295652798|3.44|149.0|142|2|anti-sense ERV3-16A3_I-int_dup872|chr2:199772560-199775177:-|1.035818197785191|0.0952928295652798|3.44|149.0|142|2|anti-sense ERV3-16A3_I-int_dup872|chr2:199772560-199775177:-|1.035818197785191|0.0952928295652798|3.44|149.0|142|2|anti-sense MSMS UPN47_class_I_Rep_2 3 544.8028564453125 2 545.290017 1088.56548 NaN NaN NaN NaN NaN NaN NaN 25.727 1 29.221 28.721 29.721 3.4945 0 0 0 0.39326 1 3616 3616 2.3027 0.4585 1 52179 7712 32584 32601 60058 60058 0.024740468228856116 VVIAARWK 8 Unmodified _VVIAARWK_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MSMS UPN47_class_I_Rep_3 4 471.795654296875 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 111.7 1 115.22 114.72 115.72 3.5207 0 0 0 0.40738 1 27426 27426 0.79363 0 1 + 52180 20293 32585 32602 60059 60059 0.1079437813059485 VVIAPAAIA 9 Unmodified _VVIAPAAIA_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;ENST00000535996.1_12:122619796-122620072:+|nuORF;ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MSMS UPN46_class_I_Rep_3 1 412.76470947265625 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 62.263 1 62.263 61.763 62.763 0 0 0 0 0.4029 1 13912 13912 0 0 1 52181 4735 32586 32603 60060 60060 0.09792178253781003 VVIDVYRI 8 Unmodified _VVIDVYRI_ 0 0 0 L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|7|1|sense L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|7|1|sense L1MD2_dup5896|chrX:19819650-19821109:-|3.1666074827055835|0.0073033569914609|8.76|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.7945861816406 2 488.794935 975.575317 0.11881 5.8072E-05 -0.10779 -5.2689E-05 0.011013 5.3832E-06 488.7947561873663 65.401 0.84132 68.756 68.421 69.263 3.3557 72 48 2 0 0 0 0.82752 1 15572 15572 4.756 0 1 132520 52182 12011 32587 32604 60061 60061 0.08655234828268021 VVIEHSISL 9 Unmodified _VVIEHSISL_ 0 0 0 REV__ENSG00000215029|ENST00000642911|TCP11X2 REV__ENSG00000215029|ENST00000642911|TCP11X2 MULTI-MSMS UPN47_class_I_Rep_1 2 498.7899475097656 2 498.78985 995.565146 0.17707 8.8321E-05 -0.047837 -2.3861E-05 0.12923 6.4461E-05 498.78965210226744 62.719 0.65544 66.078 65.689 66.344 3.3595 64 42 2 0 0 0 0.48846 1 14855 14855 1.8442 0 1 91128 + 52183 21271 32588 32605 60062 60062 0.06718627103043673 VVIFFFVSY 9 Unmodified _VVIFFFVSY_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS UPN46_class_I_Rep_3 1 560.8092651367188 2 560.807511 1119.60047 NaN NaN NaN NaN NaN NaN NaN 43.244 1 43.244 42.744 43.744 0 0 0 0 0.38299 1 8619 8619 4.756 0 1 + 52184 20270 32589 32606 60063 60063 0.04545289630868865 VVIGLTKAAKK 11 Unmodified _VVIGLTKAAKK_ 0 0 0 REV__nc|ENSG00000120907|P35348-5|ADRA1A REV__nc|ENSG00000120907|P35348-5|ADRA1A MULTI-SECPEP UPN46_class_I_Rep_3 1 564.3783569335938 2 564.379166 1126.74378 0.4523 0.00025527 -0.41971 -0.00023687 0.032593 1.8395E-05 564.3786810266029 110.25 0.11583 110.25 110.18 110.3 0 12 8 2 0 0 0 22.551 1 27155 27155 0 0 1 475430 + 52185 18717 32590 32607 60064 60064 0.18547716741909426 VVIHDKVF 8 Unmodified _VVIHDKVF_ 0 0 0 REV__L1PA5_dup4651|chr6:109133557-109136577:+|2.4726812952911845|0.2483712713893377|3.32|151.0|140|2|anti-sense REV__L1PA5_dup4651|chr6:109133557-109136577:+|2.4726812952911845|0.2483712713893377|3.32|151.0|140|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.6369934082031 2 478.781828 955.549102 0.27299 0.0001307 -0.53657 -0.0002569 -0.26358 -0.0001262 478.7814447684091 67.511 0.49957 71.019 70.901 71.4 3.5077 65 45 2 0 0 0 0.82752 1 15424 15424 7.9102 0 1 120840 + 52186 29699 32591 32608 60065 60065 0.0695496565680287 VVIILLVIKV 10 Unmodified _VVIILLVIKV_ 0 0 0 REV__MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|5|1|sense REV__MER44B_dup821|chr6:37916696-37917228:+|2.128386351367791|0.0058814529706412|8.5|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 554.9053955078125 2 554.907028 1107.7995 NaN NaN NaN NaN NaN NaN NaN 87.51 1 87.51 87.01 88.01 0 0 0 0 0.53105 1 20971 20971 0 0 1 + 52187 31321 32592 32609 60066 60066 0.2499154992954118 VVIISQDLVQV 11 Unmodified _VVIISQDLVQV_ 0 0 0 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 ENSG00000132182|ENST00000254508|NUP210 MULTI-SECPEP UPN47_class_I_Rep_1 2 606.3610229492188 2 606.863546 1211.71254 0.52996 0.00032162 -0.18184 -0.00011035 0.34812 0.00021126 607.3653218999183 108.98 0.041298 112.58 112.55 112.59 3.6046 11 3 4 0 0 0 22.551 1 26844 26844 0 0 1 3201200 52188 2735 32593 32610 60067 60067 0.115150989171525 VVIIYGHLL 9 Unmodified _VVIIYGHLL_ 0 0 0 REV__L1PB4_dup4342|chrX:77603692-77605150:+|1.1045649980709562|0.0299850132734449|5.2|151.0|69|2|anti-sense REV__L1PB4_dup4342|chrX:77603692-77605150:+|1.1045649980709562|0.0299850132734449|5.2|151.0|69|2|anti-sense MSMS UPN48_class_I_Rep_2 6 513.8192138671875 2 513.820953 1025.62735 NaN NaN NaN NaN NaN NaN NaN 57.694 1 61.208 60.708 61.708 3.5142 0 0 0 0.3264 1 12499 12499 9.3474 1.4373 1 + 52189 30592 32594 32611 60068 60068 0.11556398242055366 VVIKKRKRPPT 11 Unmodified _VVIKKRKRPPT_ 0 0 0 REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF MSMS UPN48_class_I_Rep_2 6 441.29766845703125 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 24.618 1 28.254 27.754 28.754 3.6363 0 0 0 0.38417 1 2885 2885 0.094841 0 1 + 52190 18025 32595 32612 60069 60069 0.22417277055819795 VVIKRKLLF 9 Unmodified _VVIKRKLLF_ 0 0 0 REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|161|2|anti-sense REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|161|2|anti-sense MSMS UPN47_class_I_Rep_1 2 558.3850708007812 2 558.386794 1114.75904 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.09 116.59 117.59 3.572 0 0 0 0.40038 1 28013 28013 0.6015 0 1 + 52191 31493 32596 32613 60070 60070 0.20624628329778716 VVILGPVAD 9 Unmodified _VVILGPVAD_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MSMS UPN46_class_I_Rep_3 1 441.7682800292969 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 100.48 1 100.48 99.976 100.98 0 0 0 0 0.39326 1 24492 24492 2.3027 1.5091 1 52192 1728 32597 32614 60071 60071 0.07671857045602337 VVILGPVAD 9 Unmodified _VVILGPVAD_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS UPN47_class_I_Rep_2 3 441.76800537109375 2 441.768386 881.522219 -0.077464 -3.4221E-05 -0.089571 -3.957E-05 -0.16703 -7.3791E-05 441.7682019061066 96.721 0.98116 100.2 99.85 100.83 3.4791 304 141 3 0 0 0 0.48414 1 23689 23689 2.3027 1.5091 1 3612000 52193 1728 32597 32614 60072 60072 0.07671857045602337 VVILGPVAD 9 Unmodified _VVILGPVAD_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS UPN47_class_I_Rep_3 4 441.7679138183594 2 441.768386 881.522219 -0.27065 -0.00011956 0.023906 1.0561E-05 -0.24674 -0.000109 441.76827377283024 96.871 0.97051 100.28 99.84 100.81 3.414 291 132 3 0 0 0 0.48414 4 23925 23925;23934;24083;24110 2.3027 1.5091 1 3886400 52194 1728 32597 32614 60073;60074;60075;60076 60073 0.07671857045602337 VVILGPVAD 9 Unmodified _VVILGPVAD_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS UPN48_class_I_Rep_1 5 441.7681884765625 2 441.768386 881.522219 -0.026516 -1.1714E-05 -0.10111 -4.4666E-05 -0.12762 -5.638E-05 441.7681934738912 96.591 0.94635 100.2 99.774 100.72 3.6124 232 113 3 0 0 0 0.48414 3 23185 23185;23190;23386 2.3027 1.5091 1 2513200 52195 1728 32597 32614 60077;60078;60079 60077 0.07671857045602337 VVILGPVAD 9 Unmodified _VVILGPVAD_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS UPN48_class_I_Rep_2 6 441.7678527832031 2 441.768386 881.522219 0.12681 5.6021E-05 -0.22993 -0.00010158 -0.10312 -4.5554E-05 441.7681310057335 96.391 0.88155 100.17 99.809 100.69 3.7804 275 115 3 0 0 0 0.48414 2 22820 22820;22826 2.3027 1.5091 1 2481000 52196 1728 32597 32614 60080;60081 60080 0.07671857045602337 VVILGPVAD 9 Unmodified _VVILGPVAD_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS UPN48_class_I_Rep_3 7 441.76812744140625 2 441.768386 881.522219 0.1498 6.6177E-05 -0.32169 -0.00014211 -0.17189 -7.5938E-05 441.76810661522427 96.417 0.84752 100.32 99.933 100.78 3.9084 284 116 3 0 0 0 0.48414 2 22779 22779;22783 2.3027 1.5091 1 2537100 52197 1728 32597 32614 60082;60083 60082 0.07671857045602337 VVILHWRM 8 Unmodified _VVILHWRM_ 0 0 0 REV__L1PA10_dup6999|chr22:40108774-40109564:-|1.3650594024620302|0.013250166297673|6.69|151.0|46|2|anti-sense REV__L1PA10_dup6999|chr22:40108774-40109564:-|1.3650594024620302|0.013250166297673|6.69|151.0|46|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.3050537109375 2 527.304947 1052.59534 0.40485 0.00021348 0.49932 0.00026329 0.90417 0.00047677 527.3051023839442 89.954 0.74422 93.701 93.326 94.07 3.7471 159 101 2 0 0 0 0.82752 1 21525 21525 0.79363 0 1 413970 + 52198 28992 32598 32615 60084 60084 0.07114707287246347 VVILLPLTA 9 Unmodified _VVILLPLTA_ 0 0 0 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 MSMS UPN46_class_I_Rep_3 1 469.81768798828125 2 469.817879 937.621205 NaN NaN NaN NaN NaN NaN NaN 82.421 1 82.421 81.921 82.921 0 0 0 0 0.4029 1 19525 19525 0 0 1 + 52199 17820 32599 32616 60085 60085 0.14989880010489287 VVILLPLTA 9 Unmodified _VVILLPLTA_ 0 0 0 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 MSMS UPN48_class_I_Rep_2 6 469.8330078125 2 469.817879 937.621205 NaN NaN NaN NaN NaN NaN NaN 14.567 1 18.221 17.721 18.721 3.6542 0 0 0 0.4029 1 463 463 0 0 1 + 52200 17820 32599 32616 60086 60086 0.14989880010489287 VVILLPLTA 9 Unmodified _VVILLPLTA_ 0 0 0 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15 MSMS UPN48_class_I_Rep_2 6 469.83270263671875 2 469.817879 937.621205 NaN NaN NaN NaN NaN NaN NaN 15.14 1 18.793 18.293 19.293 3.6535 0 0 0 0.4029 1 575 575 0 0 1 + 52201 17820 32599 32616 60087 60087 0.14989880010489287 VVILMKTLL 9 Unmodified _VVILMKTLL_ 0 0 0 REV__THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|24|3|sense REV__THE1D-int_dup1517|chr9:112283174-112284413:+|1.5678993567053352|0.0100099070014562|7.29|151.0|24|3|sense MSMS UPN47_class_I_Rep_3 4 515.3416137695312 2 515.340664 1028.66677 NaN NaN NaN NaN NaN NaN NaN 47.679 1 50.919 50.419 51.419 3.2405 0 0 0 0.39598 1 10308 10308 1.6526 0 1 + 52202 32304 32600 32617 60088 60088 0.15358782201246868 VVILTSSY 8 Unmodified _VVILTSSY_ 0 0 0 Tigger1_dup11494|chr20:3365692-3366642:-|2.277413825690423|0.1199506714493423|4.25|151.0|33|1|anti-sense Tigger1_dup11494|chr20:3365692-3366642:-|2.277413825690423|0.1199506714493423|4.25|151.0|33|1|anti-sense Tigger1_dup11494|chr20:3365692-3366642:-|2.277413825690423|0.1199506714493423|4.25|151.0|33|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.768310546875 2 441.252569 880.490584 0.16277 7.1821E-05 0.30511 0.00013463 0.46788 0.00020645 441.25264788018166 100.61 0.066582 100.61 100.59 100.65 0 9 5 3 0 0 0 0.82752 1 24525 24525 14.582 0 1 647150 52203 33016 32601 32618 60089 60089 0.045558642916603276 VVILTSSY 8 Unmodified _VVILTSSY_ 0 0 0 Tigger1_dup11494|chr20:3365692-3366642:-|2.277413825690423|0.1199506714493423|4.25|151.0|33|1|anti-sense Tigger1_dup11494|chr20:3365692-3366642:-|2.277413825690423|0.1199506714493423|4.25|151.0|33|1|anti-sense Tigger1_dup11494|chr20:3365692-3366642:-|2.277413825690423|0.1199506714493423|4.25|151.0|33|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 441.7681579589844 2 441.252569 880.490584 -0.27575 -0.00012167 1.1264 0.00049704 0.85068 0.00037536 441.2527219454587 96.764 0.036095 100.18 100.16 100.2 3.414 4 2 2 0 0 0 0.72333 1 23988 23988 14.582 0 1 411730 52204 33016 32601 32618 60090 60090 0.045558642916603276 VVILYYRMG 9 Unmodified _VVILYYRMG_ 0 0 0 REV__L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|61|1|anti-sense REV__L1PA7_dup10322|chr12:42224379-42226140:-|3.35075676079907|0.1863675344228543|4.17|151.0|61|1|anti-sense MSMS UPN48_class_I_Rep_2 6 557.3099975585938 2 557.309895 1112.60524 NaN NaN NaN NaN NaN NaN NaN 48.8 1 52.517 52.017 53.017 3.7175 0 0 0 0.39518 1 9790 9790 1.8442 0 1 + 52205 29974 32602 32619 60091 60091 0.053438505019585136 VVIMCHSRF 9 Unmodified _VVIMCHSRF_ 0 0 0 L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|25|3|sense L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|25|3|sense L1MC1_dup2319|chr3:47030791-47031452:+|1.6384472460026342|0.0482154179209929|5.09|150.0|25|3|sense MSMS UPN48_class_I_Rep_3 7 546.2794189453125 2 546.278072 1090.54159 NaN NaN NaN NaN NaN NaN NaN 51.853 1 55.451 54.951 55.951 3.5979 0 0 0 0.38784 1 10663 10663 3.5965 0.60125 1 52206 11125 32603 32620 60092 60092 -5.8332067737865145E-05 VVINNYYRY 9 Unmodified _VVINNYYRY_ 0 0 0 ENST00000587989.1_1_17:42264441-42265023:+|nuORF ENST00000587989.1_1_17:42264441-42265023:+|nuORF ENST00000587989.1_1_17:42264441-42265023:+|nuORF MSMS UPN47_class_I_Rep_3 4 401.8777770996094 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 15.643 1 19.008 18.508 19.508 3.3659 0 0 0 0.40038 1 840 840 0.26902 0.033176 1 52207 7594 32604 32621 60093 60093 0.015208168803155786 VVIQPISG 8 Unmodified _VVIQPISG_ 0 0 0 nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236 nc|ENSG00000130856|Q9UL36-2|ZNF236 nc|ENSG00000130856|Q9UL36-2|ZNF236 MSMS UPN48_class_I_Rep_2 6 406.74896240234375 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 69.974 1 73.495 72.995 73.995 3.5216 0 0 0 0.40746 1 16247 16247 0.69038 0 1 52208 2685 32605 32622 60094 60094 0.06707301357096185 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_1 5 482.2921447753906 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 32.14 1 35.667 35.167 36.167 3.5266 0 0 0 0.40738 1 4849 4849 0.79363 0 1 52209 396 32606 32623 60095 60095 0.08738975756318723 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_2 6 482.291748046875 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 34.325 1 37.998 37.498 38.498 3.6735 0 0 0 0.40738 1 5518 5518 0.79363 0 1 52210 396 32606 32623 60096 60096 0.08738975756318723 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_2 6 482.2923278808594 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 34.932 1 38.605 38.105 39.105 3.6735 0 0 0 0.40738 1 5692 5692 0.79363 0 1 52211 396 32606 32623 60097 60097 0.08738975756318723 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 482.29254150390625 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 30.552 1 34.266 33.766 34.766 3.7146 0 0 0 0.40738 1 4420 4420 0.79363 0 1 52212 396 32606 32623 60098 60098 0.08738975756318723 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 482.29150390625 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 32.068 1 35.77 35.27 36.27 3.7015 0 0 0 0.40738 1 4828 4828 0.79363 0 1 52213 396 32606 32623 60099 60099 0.08738975756318723 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 482.2922668457031 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 33.252 1 36.941 36.441 37.441 3.6896 0 0 0 0.40738 1 5145 5145 0.79363 0 1 52214 396 32606 32623 60100 60100 0.08738975756318723 VVIRPPWP 8 Unmodified _VVIRPPWP_ 0 0 0 AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense AluY_dup9797|chr2:30152887-30153201:-|1.0705218537557866|0.3871818720818978|1.47|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_3 7 482.291748046875 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 34.583 1 38.255 37.755 38.755 3.6721 0 0 0 0.40738 1 5507 5507 0.79363 0 1 52215 396 32606 32623 60101 60101 0.08738975756318723 VVISLKKVKN 10 Unmodified _VVISLKKVKN_ 0 0 0 REV__nc|ENSG00000184381|O60733-2|PLA2G6 REV__nc|ENSG00000184381|O60733-2|PLA2G6 MULTI-MSMS UPN46_class_I_Rep_3 1 564.37939453125 2 564.379166 1126.74378 0.43089 0.00024319 0.17339 9.786E-05 0.60428 0.00034105 564.3792144031676 43.463 0.072578 43.463 43.448 43.521 0 7 4 2 0 0 0 0.56543 1 8682 8682 0 0 1 284710 + 52216 20819 32607 32624 60102 60102 0.185477167419549 VVISLKKVKN 10 Unmodified _VVISLKKVKN_ 0 0 0 REV__nc|ENSG00000184381|O60733-2|PLA2G6 REV__nc|ENSG00000184381|O60733-2|PLA2G6 MULTI-SECPEP UPN46_class_I_Rep_3 1 564.3793334960938 2 564.379166 1126.74378 0.4334 0.0002446 0.2586 0.00014595 0.692 0.00039055 564.3791184358598 43.139 0.073296 43.139 43.12 43.193 0 9 3 4 0 0 0 0.84575 1 8596 8596 0 0 1 1037700 + 52217 20819 32607 32624 60103 60103 0.185477167419549 VVISLKKVKN 10 Unmodified _VVISLKKVKN_ 0 0 0 REV__nc|ENSG00000184381|O60733-2|PLA2G6 REV__nc|ENSG00000184381|O60733-2|PLA2G6 MULTI-MSMS UPN47_class_I_Rep_3 4 564.3794555664062 2 564.379166 1126.74378 0.5041 0.0002845 0.16422 9.2683E-05 0.66832 0.00037718 564.3791958773774 108.24 0.42466 111.78 111.7 112.13 3.5382 61 44 2 0 0 0 0.56543 1 26461 26461 0 0 1 17067000 + 52218 20819 32607 32624 60104 60104 0.185477167419549 VVISLKKVKN 10 Unmodified _VVISLKKVKN_ 0 0 0 REV__nc|ENSG00000184381|O60733-2|PLA2G6 REV__nc|ENSG00000184381|O60733-2|PLA2G6 MULTI-MSMS UPN48_class_I_Rep_3 7 564.379638671875 2 564.379166 1126.74378 0.43626 0.00024622 0.57483 0.00032442 1.0111 0.00057064 564.3793362008565 108.5 0.19237 112.17 112.05 112.25 3.6751 24 18 2 0 0 0 0.56543 1 25684 25684 0 0 1 7719700 + 52219 20819 32607 32624 60105 60105 0.185477167419549 VVITLAIEL 9 Unmodified _VVITLAIEL_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|95|1|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81256103515625 2 485.812793 969.611034 NaN NaN NaN NaN NaN NaN NaN 113.41 1 116.98 116.48 117.48 3.572 0 0 0 0.4029 1 27978 27978 0 0 1 + 52220 28021 32608 32625 60106 60106 0.12501272285260256 VVITLAIEL 9 Unmodified _VVITLAIEL_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|95|1|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|95|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 485.8116149902344 2 485.812793 969.611034 0.18925 9.1942E-05 -1.2276 -0.0005964 -1.0384 -0.00050446 485.8116627195446 68.838 0.28912 72.108 72.077 72.366 3.2696 32 23 2 0 0 0 0.50582 1 16676 16676 0 0 1 298490 + 52221 28021 32608 32625 60107 60107 0.12501272285260256 VVITLAIEL 9 Unmodified _VVITLAIEL_ 0 0 0 REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|95|1|anti-sense REV__L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|95|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 485.8116455078125 2 485.812793 969.611034 0.14333 6.9632E-05 -1.3247 -0.00064355 -1.1814 -0.00057392 485.81151509131354 68.522 0.19024 71.72 71.61 71.8 3.1977 20 13 2 0 0 0 0.50582 1 16668 16668 0 0 1 287170 + 52222 28021 32608 32625 60108 60108 0.12501272285260256 VVITLPIQ 8 Unmodified _VVITLPIQ_ 0 0 0 REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 441.2976379394531 2 441.786579 881.558604 0.066765 2.9496E-05 3.0274 0.0013375 3.0942 0.001367 441.7878584951954 43.329 0.077721 46.967 46.924 47.002 3.6385 7 4 2 0 0 0 0.72333 1 8053 8053 0.69038 0 1 49209 + 52223 17830 32609 32626 60109 60109 0.11308733942325944 VVITLPIQ 8 Unmodified _VVITLPIQ_ 0 0 0 REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 441.786579 881.558604 0.12419 5.4866E-05 3.2212 0.0014231 3.3453 0.0014779 441.7879501572981 47.129 0.084961 47.129 47.061 47.146 0 0.11511 -0.00039987 NaN 0.69038 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 82644 + 52224 17830 32609 32626 0.11308733942325944 VVITLPIQ 8 Unmodified _VVITLPIQ_ 0 0 0 REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 441.786579 881.558604 -0.5671 -0.00025054 4.004 0.0017689 3.4369 0.0015184 441.78825802446573 43.701 0.25172 47.059 46.901 47.152 3.358 0.045289 0.00029181 NaN 0.69038 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 42703 + 52225 17830 32609 32626 0.11308733942325944 VVITLPIQ 8 Unmodified _VVITLPIQ_ 0 0 0 REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF REV__ENST00000549401.5_1_12:72956674-72976016:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 441.786579 881.558604 -0.62537 -0.00027628 4.1157 0.0018183 3.4904 0.001542 441.7882559602462 43.658 0.13811 46.899 46.823 46.961 3.2419 -0.11411 0.00039056 NaN 0.69038 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 41153 + 52226 17830 32609 32626 0.11308733942325944 VVIVVFFWFFF 11 Unmodified _VVIVVFFWFFF_ 0 0 0 REV__AluSx_dup101306|chr18:2662364-2662689:+|1.0613918632094734|0.0270660545452352|5.29|151.0|14|1|anti-sense REV__AluSx_dup101306|chr18:2662364-2662689:+|1.0613918632094734|0.0270660545452352|5.29|151.0|14|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 484.271484375 3 483.937165 1448.78967 0.25775 0.00012474 -0.60944 -0.00029493 -0.35169 -0.0001702 483.93671177009264 43.242 0.35091 43.242 42.99 43.341 0 51 33 3 0 0 0 0.65186 2 8588 8588;8624 3.0723 0.44103 1 804510 + 52227 17129 32610 32627 60110;60111 60110 0.08322361924138022 VVIWKRKC 8 Unmodified _VVIWKRKC_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|248|1|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|248|1|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|248|1|anti-sense MSMS UPN48_class_I_Rep_2 6 516.314697265625 2 516.312772 1030.61099 NaN NaN NaN NaN NaN NaN NaN 93.66 1 97.43 96.93 97.93 3.77 0 0 0 0.40738 1 22270 22270 0.79363 0.10326 1 52228 13657 32611 32628 60112 60112 0.09690993804292702 VVIWRWEDE 9 Unmodified _VVIWRWEDE_ 0 0 0 L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|10|1|sense L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|10|1|sense L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|10|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 616.8368530273438 2 616.308938 1230.60332 0.52225 0.00032187 0.050854 3.1342E-05 0.57311 0.00035321 616.3088552180299 57.281 0.68839 60.775 60.356 61.044 3.4942 105 58 2 0 0 0 0.12099 1 12370 12370 6.7232 0 1 235950 52229 12167 32612 32629 60113 60113 -0.0027548698228656576 VVIWRWEDE 9 Unmodified _VVIWRWEDE_ 0 0 0 L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|10|1|sense L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|10|1|sense L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.8103637695312 2 616.308938 1230.60332 0.5964 0.00036757 0.025438 1.5678E-05 0.62184 0.00038324 616.30882673679 57.169 0.85905 60.684 60.407 61.266 3.5142 112 71 2 0 0 0 0.42249 1 12367 12367 6.7232 0.09279 1 257580 52230 12167 32612 32629 60114 60114 -0.0027548698228656576 VVKAVLRKN 9 Unmodified _VVKAVLRKN_ 0 0 0 L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|1|1|sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|1|1|sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 514.3447265625 2 513.842751 1025.67095 -0.23632 -0.00012143 0.41336 0.0002124 0.17704 9.0969E-05 513.8429130056071 17.908 0.93137 21.459 20.937 21.869 3.5504 154 112 2 0 0 0 0.50582 1 1488 1488 0 0 1 51047 52231 11207 32613 32630 60115 60115 0.15914007739183944 VVKAVLRKN 9 Unmodified _VVKAVLRKN_ 0 0 0 L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|1|1|sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|1|1|sense L1MC1_dup9183|chr11:60225613-60227269:+|2.4349514697875154|0.1003792861040901|4.6|149.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 514.3440551757812 2 513.842751 1025.67095 -0.51783 -0.00026608 0.33835 0.00017386 -0.17949 -9.2227E-05 513.8429449626259 19.196 0.6809 22.547 22.111 22.792 3.3514 91 69 2 0 0 0 0.50582 2 1741 1741;1813 0 0 1 39277 52232 11207 32613 32630 60116;60117 60116 0.15914007739183944 VVKDLKTIRTP 11 Unmodified _VVKDLKTIRTP_ 0 0 0 REV__nc|ENSG00000088926|P03951-2|F11 REV__nc|ENSG00000088926|P03951-2|F11 MSMS UPN48_class_I_Rep_3 7 635.3842163085938 2 635.398087 1268.78162 NaN NaN NaN NaN NaN NaN NaN 107.65 1 111.33 110.83 111.83 3.6813 0 0 0 0.32232 1 25391 25391 10.8 3.1906 1 + 52233 17998 32614 32631 60118 60118 0.15798182936759986 VVKDLLLLI 9 Unmodified _VVKDLLLLI_ 0 0 0 REV__L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|95|3|anti-sense REV__L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|95|3|anti-sense MSMS UPN46_class_I_Rep_3 1 513.3538818359375 2 513.352086 1024.68962 NaN NaN NaN NaN NaN NaN NaN 22.384 1 22.384 21.884 22.884 0 0 0 0 0.4029 1 2648 2648 0 0 1 + 52234 26505 32615 32632 60119 60119 0.1782612459039683 VVKDLLLLI 9 Unmodified _VVKDLLLLI_ 0 0 0 REV__L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|95|3|anti-sense REV__L1MC1_dup1140|chr2:11278943-11280343:+|1.0287564948360783|0.0657715555844003|3.97|151.0|95|3|anti-sense MSMS UPN46_class_I_Rep_3 1 513.3531494140625 2 513.352086 1024.68962 NaN NaN NaN NaN NaN NaN NaN 22.559 1 22.559 22.059 23.059 0 0 0 0 0.4029 1 2699 2699 0 0 1 + 52235 26505 32615 32632 60120 60120 0.1782612459039683 VVKDTTNKKT 10 Unmodified _VVKDTTNKKT_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-MSMS UPN46_class_I_Rep_3 1 567.3302001953125 2 567.32987 1132.64519 0.46334 0.00026287 -0.0014215 -8.0645E-07 0.46192 0.00026206 567.3295937653246 98.925 0.22803 98.925 98.741 98.969 0 53 25 3 0 0 0 0.56543 1 24087 24087 0 0 1 360680 52236 3073 32616 32633 60121 60121 0.08417068706216924 VVKEKLAI 8 Unmodified _VVKEKLAI_ 0 0 0 ENSG00000160058.19,BSDC1,chr1,-,I7.1,32376742,32377969|29|7.74|4|intron;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1 ENSG00000160058.19,BSDC1,chr1,-,I7.1,32376742,32377969|29|7.74|4|intron ENSG00000160058.19,BSDC1,chr1,-,I7.1,32376742,32377969|29|7.74|4|intron MULTI-MSMS UPN47_class_I_Rep_2 3 450.299072265625 2 450.299853 898.585153 -0.5556 -0.00025019 -0.58039 -0.00026135 -1.136 -0.00051154 450.2993993201954 33.976 0.78178 37.416 37.084 37.866 3.4398 103 51 3 0 0 0 0.82752 1 6017 6017 0.79363 0 1 153900 52237 3852 32617 32634 60122 60122 0.13180422833636385 VVKELLSFG 9 Unmodified _VVKELLSFG_ 0 0 0 REV__L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|46|3|sense REV__L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|46|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.295654296875 2 496.294768 990.574983 0.28772 0.00014279 1.5982 0.00079319 1.8859 0.00093598 496.2955268841798 40.934 0.038849 40.934 40.922 40.961 0 4 2 2 0 0 0 0.42249 1 7983 7983 6.7232 1.4925 1 2648900 + 52238 27002 32618 32635 60123 60123 0.07931815108440787 VVKFNLLTFKV 11 Unmodified _VVKFNLLTFKV_ 0 0 0 L1M2_dup3182|chr5:179999744-180000000:-|1.2676359605425331|0.0151055334695106|6.39|151.0|21|3|anti-sense L1M2_dup3182|chr5:179999744-180000000:-|1.2676359605425331|0.0151055334695106|6.39|151.0|21|3|anti-sense L1M2_dup3182|chr5:179999744-180000000:-|1.2676359605425331|0.0151055334695106|6.39|151.0|21|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 436.60809326171875 3 436.607708 1306.80129 0.18087 7.8969E-05 -0.358 -0.00015631 -0.17713 -7.7338E-05 436.6079107795981 60.162 0.46532 63.649 63.401 63.867 3.4868 70 39 3 0 0 0 0.68081 1 13204 13204 0.45452 0 1 225910 52239 8678 32619 32636 60124 60124 0.16016558947467274 VVKGSPPW 8 Unmodified _VVKGSPPW_ 0 0 0 LTR16A2_dup380|chr3:87934296-87934722:+|1.0175350457724577|0.0022319557825644|8.83|124.0|19|2|anti-sense LTR16A2_dup380|chr3:87934296-87934722:+|1.0175350457724577|0.0022319557825644|8.83|124.0|19|2|anti-sense LTR16A2_dup380|chr3:87934296-87934722:+|1.0175350457724577|0.0022319557825644|8.83|124.0|19|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 434.8822326660156 2 435.247621 868.480688 0.13788 6.0011E-05 1.5042 0.00065472 1.6421 0.00071473 435.2469100596517 99.74 0.49405 103.59 103.43 103.93 3.8537 157 68 3 0 0 0 0.72333 1 23650 23650 0.79363 0 1 322750 52240 15574 32620 32637 60125 60125 0.04118721076940801 VVKHLIRIK 9 Unmodified _VVKHLIRIK_ 0 0 0 ENST00000465432.1_1_2:99797706-99812165:+|nuORF;ENSG00000185414|ENST00000338148|MRPL30;ENSG00000241962|ENST00000424491|unknown ENST00000465432.1_1_2:99797706-99812165:+|nuORF ENST00000465432.1_1_2:99797706-99812165:+|nuORF MSMS UPN48_class_I_Rep_1 5 553.3800659179688 2 553.382043 1104.74953 NaN NaN NaN NaN NaN NaN NaN 113.55 1 117.18 116.68 117.68 3.6314 0 0 0 0.4029 1 27585 27585 0 0 1 52241 5102 32621 32638 60126 60126 0.20134860044231573 VVKIHKLPKVL 11 Unmodified _VVKIHKLPKVL_ 0 0 0 REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|43|2|sense REV__HERVK9-int_dup260|chr6:45236893-45241193:+|1.0146292286068217|0.0486903062835837|4.38|148.0|43|2|sense MSMS UPN46_class_I_Rep_3 1 637.442138671875 2 637.439558 1272.86456 NaN NaN NaN NaN NaN NaN NaN 57.076 1 57.076 56.576 57.576 0 0 0 0 0.38417 1 12486 12486 0.30703 0 1 + 52242 23834 32622 32639 60127 60127 0.23904544455399446 VVKKETNIR 9 Unmodified _VVKKETNIR_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|40|2|sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|40|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 543.835205078125 2 543.835123 1085.65569 -0.45598 -0.00024798 -0.39588 -0.00021529 -0.85186 -0.00046327 543.8349276325349 12.912 0.10224 16.286 16.203 16.305 3.3734 16 10 2 0 0 0 0.12532 1 186 186 0.52476 0 1 16762 + 52243 24717 32623 32640 60128 60128 0.11629096151295926 VVKKETNIR 9 Unmodified _VVKKETNIR_ 0 0 0 REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|40|2|sense REV__L1M6_dup2264|chr6:155901958-155903411:-|1.2144452323095418|0.0410924460780436|4.89|144.0|40|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 543.835123 1085.65569 0.014348 7.8031E-06 -1.0164 -0.00055277 -1.0021 -0.00054497 543.8343781140197 12.885 0.077924 16.273 16.234 16.312 3.388 -0.0062249 -0.00044093 NaN 0.52476 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 22825 + 52244 24717 32623 32640 0.11629096151295926 VVKKKKFKL 9 Unmodified _VVKKKKFKL_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MSMS UPN48_class_I_Rep_2 6 559.3970947265625 2 559.394619 1116.77469 NaN NaN NaN NaN NaN NaN NaN 81.043 1 84.699 84.199 85.199 3.6567 0 0 0 0.4029 1 19229 19229 0 0 1 52245 930 32624 32641 60129 60129 0.22096914846838445 VVKKKKKK 8 Unmodified _VVKKKKKK_ 0 0 0 L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|2|1|sense REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF MSMS UPN47_class_I_Rep_2 3 493.3640441894531 2 493.365862 984.717171 NaN NaN NaN NaN NaN NaN NaN 107.75 1 111.28 110.78 111.78 3.5345 0 0 0 0.40798 1 26078 26078 0 0 1 52246 18234 32625 32642 60130 60130 0.22420072641261868 VVKKKKKK 8 Unmodified _VVKKKKKK_ 0 0 0 L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|2|1|sense REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF MSMS UPN48_class_I_Rep_3 7 493.35369873046875 2 493.365862 984.717171 NaN NaN NaN NaN NaN NaN NaN 107.72 1 111.4 110.9 111.9 3.6813 0 0 0 0.40798 1 25412 25412 0 0 1 52247 18234 32625 32642 60131 60131 0.22420072641261868 VVKKKRRATG 10 Unmodified _VVKKKRRATG_ 0 0 0 REV__nc|ENSG00000134717|Q96K17-3|BTF3L4 REV__nc|ENSG00000134717|Q96K17-3|BTF3L4 MSMS UPN46_class_I_Rep_3 1 572.2553100585938 2 571.877656 1141.74076 NaN NaN NaN NaN NaN NaN NaN 41.749 1 41.749 41.249 42.249 0 0 0 0 0.53105 1 8209 8209 0 0 1 + 52248 19107 32626 32643 60132 60132 0.17555886407762955 VVKKTKIS 8 Unmodified _VVKKTKIS_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 451.8047790527344 2 451.805303 901.596052 0.1685 7.613E-05 -0.74953 -0.00033864 -0.58103 -0.00026251 451.80478385747847 108.24 0.17416 111.92 111.76 111.94 3.6813 21 16 2 0 0 0 0.82752 1 25592 25592 0 0 1 3948300 52249 7354 32627 32644 60133 60133 0.14131825207925885 VVKKTKIS 8 Unmodified _VVKKTKIS_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 451.805303 901.596052 0.050242 2.27E-05 0.1007 4.5495E-05 0.15094 6.8195E-05 451.80482600048754 108.31 0.22649 111.84 111.66 111.89 3.5333 -0.067677 0.00051839 NaN 0 38 20 3 NaN NaN NaN NaN 0 NaN NaN 0 2583400 52250 7354 32627 32644 0.14131825207925885 VVKKTKIS 8 Unmodified _VVKKTKIS_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 451.805303 901.596052 -0.16278 -7.3543E-05 -0.32737 -0.00014791 -0.49015 -0.00022145 451.8049535500228 108.38 0.047012 111.91 111.89 111.94 3.5382 0.0030977 0.00013159 NaN 0 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1593800 52251 7354 32627 32644 0.14131825207925885 VVKKTKIS 8 Unmodified _VVKKTKIS_ 0 0 0 ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF ENST00000540992.1_1_12:16666501-16667302:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 451.805303 901.596052 0.15535 7.0186E-05 -0.51693 -0.00023355 -0.36158 -0.00016337 451.8048014489213 108.3 0.40426 111.97 111.72 112.12 3.6746 0.058882 -3.9699E-05 NaN 0 84 45 2 NaN NaN NaN NaN 0 NaN NaN 0 3432900 52252 7354 32627 32644 0.14131825207925885 VVKLLGEQY 9 Unmodified _VVKLLGEQY_ 0 0 0 ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2 ENST00000444314.6_1_11:65101357-65109054:+|nuORF ENST00000444314.6_1_11:65101357-65109054:+|nuORF MSMS UPN46_class_I_Rep_3 1 524.8036499023438 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 54.307 1 54.307 53.807 54.807 0 0 0 0 0.10427 1 11747 11747 23.79 10.282 1 52253 2821 32628 32645 60134 60134 0.07455200137133033 VVKLLLTLS 9 Unmodified _VVKLLLTLS_ 0 0 0 REV__AluJo_dup15029|chr3:128732571-128732839:+|2.2489726524250773|0.0171353035440963|7.04|151.0|12|2|anti-sense REV__AluJo_dup15029|chr3:128732571-128732839:+|2.2489726524250773|0.0171353035440963|7.04|151.0|12|2|anti-sense MSMS UPN47_class_I_Rep_3 4 493.3536682128906 2 493.336436 984.658318 NaN NaN NaN NaN NaN NaN NaN 108.19 1 111.73 111.23 112.23 3.5382 0 0 0 0.3967 1 26456 26456 1.4819 0 1 + 52254 16984 32629 32646 60135 60135 0.16537551556268681 VVKLLQEY 8 Unmodified _VVKLLQEY_ 0 0 0 REV__ENSG00000104951|ENST00000391826|IL4I1 REV__ENSG00000104951|ENST00000391826|IL4I1 MSMS UPN46_class_I_Rep_3 1 496.2955322265625 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 41.149 1 41.149 40.649 41.649 0 0 0 0 0.36226 1 8040 8040 19.257 7.6167 1 + 52255 18275 32630 32647 60136 60136 0.0793181510841805 VVKNLTCLT 9 Unmodified _VVKNLTCLT_ 0 0 0 Tigger17a_dup2230|chr21:39230393-39231002:-|1.4386676357596886|0.2480014613115559|2.54|151.0|1|1|sense Tigger17a_dup2230|chr21:39230393-39231002:-|1.4386676357596886|0.2480014613115559|2.54|151.0|1|1|sense Tigger17a_dup2230|chr21:39230393-39231002:-|1.4386676357596886|0.2480014613115559|2.54|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 495.7967224121094 2 495.786253 989.557952 NaN NaN NaN NaN NaN NaN NaN 71.956 1 75.331 74.831 75.831 3.3751 0 0 0 0.4029 1 17576 17576 0 0 1 52256 33256 32631 32648 60137 60137 0.06275571230946753 VVKPLIAL 8 Unmodified _VVKPLIAL_ 0 0 0 REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|31|1|sense REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|31|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 426.29486083984375 2 426.799489 851.584425 0.074286 3.1705E-05 -2.1826 -0.00093155 -2.1084 -0.00089984 426.79639857900713 71.312 0.20259 74.863 74.791 74.994 3.5505 25 19 2 0 0 0 0.72333 1 16622 16622 0 0 1 66026 + 52257 29867 32632 32649 60138 60138 0.15269628184591966 VVKPLIALKVI 11 Unmodified _VVKPLIALKVI_ 0 0 0 REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|31|1|sense REV__L1PA6_dup2962|chr7:138485354-138490458:-|3.694057631508559|0.021174605525037|7.45|151.0|31|1|sense MSMS UPN46_class_I_Rep_3 1 596.9224243164062 2 596.923209 1191.83187 NaN NaN NaN NaN NaN NaN NaN 58.67 1 58.67 58.17 59.17 0 0 0 0 0.38417 1 12925 12925 0 0 1 + 52258 29867 32633 32650 60139 60139 0.243623373325363 VVKPRQIW 8 Unmodified _VVKPRQIW_ 0 0 0 L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|7|1|sense L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|7|1|sense L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 513.3174438476562 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 41.954 1 45.462 44.962 45.962 3.5079 0 0 0 0.40625 1 7705 7705 2.3027 0 1 52259 8811 32634 32651 60140 60140 0.10686049676360199 VVKPRQIW 8 Unmodified _VVKPRQIW_ 0 0 0 L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|7|1|sense L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|7|1|sense L1M3f_dup627|chr17:47387571-47388530:-|1.438733289883588|0.1904835824571681|2.92|150.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 513.317138671875 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 41.574 1 45.22 44.72 45.72 3.6458 0 0 0 0.40625 1 7525 7525 2.3027 0 1 52260 8811 32634 32651 60141 60141 0.10686049676360199 VVKPSLPQSIL 11 Unmodified _VVKPSLPQSIL_ 0 0 0 L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|90|2|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|90|2|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|90|2|anti-sense MSMS UPN48_class_I_Rep_2 6 590.8678588867188 2 590.868631 1179.72271 NaN NaN NaN NaN NaN NaN NaN 100.53 1 104.28 103.78 104.78 3.7417 0 0 0 0.38417 1 23873 23873 1.0715 0.46996 1 52261 10899 32635 32652 60142 60142 0.14003706642415636 VVKPSLPQSIL 11 Unmodified _VVKPSLPQSIL_ 0 0 0 L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|90|2|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|90|2|anti-sense L1MB8_dup1042|chr1:244674328-244676084:-|1.2785458831080994|0.0421177284966918|4.92|150.0|90|2|anti-sense MSMS UPN48_class_I_Rep_3 7 590.8665161132812 2 590.868631 1179.72271 NaN NaN NaN NaN NaN NaN NaN 98.844 1 102.73 102.23 103.23 3.8839 0 0 0 0.38417 1 23418 23418 1.0715 0.5467 1 52262 10899 32635 32652 60143 60143 0.14003706642415636 VVKQQRWW 8 Unmodified _VVKQQRWW_ 0 0 0 L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|318|3|anti-sense L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|318|3|anti-sense L1PREC2_dup3558|chr7:135105370-135110782:-|1.073853962647837|0.0970426189093594|3.47|151.0|318|3|anti-sense MSMS UPN48_class_I_Rep_3 7 565.3151245117188 2 565.3169 1128.61925 NaN NaN NaN NaN NaN NaN NaN 112.66 1 116.32 115.82 116.82 3.6614 0 0 0 0.40746 1 26771 26771 0.69038 0 1 52263 15445 32636 32653 60144 60144 0.060082640452719716 VVKRAIPE 8 Unmodified _VVKRAIPE_ 0 0 0 REV__ENSG00000135655|ENST00000280377|USP15 REV__ENSG00000135655|ENST00000280377|USP15 MSMS UPN48_class_I_Rep_2 6 456.30145263671875 2 456.287277 910.560001 NaN NaN NaN NaN NaN NaN NaN 44.582 1 48.343 47.843 48.843 3.7617 0 0 0 0.4044 1 8513 8513 4.756 0.42677 1 + 52264 19149 32637 32654 60145 60145 0.10114368031065624 VVKRKGTS 8 Unmodified _VVKRKGTS_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MSMS UPN48_class_I_Rep_1 5 437.691650390625 2 437.777077 873.5396 NaN NaN NaN NaN NaN NaN NaN 63.297 1 66.757 66.257 67.257 3.4598 0 0 0 0.40746 1 14238 14238 0.69038 0 1 + 52265 18182 32638 32655 60146 60146 0.0977719737127245 VVKRKHKVSKL 11 Unmodified _VVKRKHKVSKL_ 0 0 0 REV__L1M4_dup8109|chr7:112781527-112782165:+|1.149660041491836|0.2677832378430612|2.1|150.0|46|2|anti-sense REV__L1M4_dup8109|chr7:112781527-112782165:+|1.149660041491836|0.2677832378430612|2.1|150.0|46|2|anti-sense MSMS UPN46_class_I_Rep_3 1 441.297607421875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 14.93 1 14.93 14.43 15.43 0 0 0 0 0.38417 1 755 755 0.094841 0 1 + 52266 24454 32639 32656 60147 60147 0.22417277055819795 VVKRKKKK 8 Unmodified _VVKRKKKK_ 0 0 0 REV__Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense REV__Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense MSMS UPN47_class_I_Rep_2 3 507.354736328125 2 507.368936 1012.72332 NaN NaN NaN NaN NaN NaN NaN 108.03 1 111.56 111.06 112.06 3.5333 0 0 0 0.40798 1 26168 26168 0 0 1 + 52267 17282 32640 32657 60148 60148 0.21746590872783145 VVKRKKKK 8 Unmodified _VVKRKKKK_ 0 0 0 REV__Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense REV__Charlie10b_dup276|chr20:35723132-35723315:-|1.1452601270383036|0.0350900855743846|5.03|151.0|13|3|anti-sense MSMS UPN47_class_I_Rep_2 3 507.3548583984375 2 507.368936 1012.72332 NaN NaN NaN NaN NaN NaN NaN 109.84 1 113.37 112.87 113.87 3.5307 0 0 0 0.40798 1 26760 26760 0 0 1 + 52268 17282 32640 32657 60149 60149 0.21746590872783145 VVKRLVKLE 9 Unmodified _VVKRLVKLE_ 0 0 0 ENST00000302418.4_1_10:32324564-32326195:-|nuORF ENST00000302418.4_1_10:32324564-32326195:-|nuORF ENST00000302418.4_1_10:32324564-32326195:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.36669921875 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 37.223 1 37.223 36.723 37.723 0 0 0 0 0.4029 1 6977 6977 0 0 1 52269 6080 32641 32658 60150 60150 0.17951447570476375 VVKRLVKLE 9 Unmodified _VVKRLVKLE_ 0 0 0 ENST00000302418.4_1_10:32324564-32326195:-|nuORF ENST00000302418.4_1_10:32324564-32326195:-|nuORF ENST00000302418.4_1_10:32324564-32326195:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.36669921875 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 38.024 1 38.024 37.524 38.524 0 0 0 0 0.4029 1 7205 7205 0 0 1 52270 6080 32641 32658 60151 60151 0.17951447570476375 VVKRLVKLE 9 Unmodified _VVKRLVKLE_ 0 0 0 ENST00000302418.4_1_10:32324564-32326195:-|nuORF ENST00000302418.4_1_10:32324564-32326195:-|nuORF ENST00000302418.4_1_10:32324564-32326195:-|nuORF MSMS UPN46_class_I_Rep_3 1 542.3663940429688 2 542.366059 1082.71756 NaN NaN NaN NaN NaN NaN NaN 44.071 1 44.071 43.571 44.571 0 0 0 0 0.4029 1 8851 8851 0 0 1 52271 6080 32641 32658 60152 60152 0.17951447570476375 VVKRPWLEP 9 Unmodified _VVKRPWLEP_ 0 0 0 REV__AluJo_dup13542|chr3:49402409-49402688:+|1.5554078544264482|0.0069351418667816|7.81|151.0|16|1|anti-sense REV__AluJo_dup13542|chr3:49402409-49402688:+|1.5554078544264482|0.0069351418667816|7.81|151.0|16|1|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 35.102 1 35.102 34.602 35.602 0 0 0 0 0.4007 1 6350 6350 0.52476 0 1 + 52272 16983 32642 32659 60153 60153 0.09854301502264207 VVKSPIIIV 9 Unmodified _VVKSPIIIV_ 0 0 0 L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|283|2|anti-sense;L1PA5_dup4648|chr6:107166664-107170611:-|4.353784867043574|0.101672484378601|5.42|151.0|202|3|anti-sense L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|283|2|anti-sense L1PA4_dup10815|chr16:31900802-31906925:-|1.1608230167650069|0.0642807594506438|4.17|151.0|283|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.3302307128906 2 484.331153 966.647754 NaN NaN NaN NaN NaN NaN NaN 100.14 1 100.14 99.639 100.64 0 0 0 0 0.4007 1 24407 24407 0.52476 0 1 52273 14304 32643 32660 60154 60154 0.1630956890184052 VVKTKKKKIS 10 Unmodified _VVKTKKKKIS_ 0 0 0 L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|20|2|sense L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|20|2|sense L1MC4_dup4906|chr3:111656124-111657004:+|1.118611270700825|0.0385344803171339|4.86|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 579.9006958007812 2 579.900266 1157.78598 NaN NaN NaN NaN NaN NaN NaN 49.076 1 49.076 48.576 49.576 0 0 0 0 0.53105 1 10277 10277 0 0 1 52274 11497 32644 32661 60155 60155 0.21339692150331757 VVKVRKLLIP 10 Unmodified _VVKVRKLLIP_ 0 0 0 REV__L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|11|1|sense REV__L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 582.9157104492188 2 582.913176 1163.8118 NaN NaN NaN NaN NaN NaN NaN 46.812 1 46.812 46.312 47.312 0 0 0 0 0.53105 1 9626 9626 0 0 1 + 52275 26989 32645 32662 60156 60156 0.2364458639260647 VVKWTTHR 8 Unmodified _VVKWTTHR_ 0 0 0 REV__L1MDa_dup6142|chr18:9177827-9179521:-|1.4637887749870118|0.0755020095029789|4.28|151.0|27|2|sense REV__L1MDa_dup6142|chr18:9177827-9179521:-|1.4637887749870118|0.0755020095029789|4.28|151.0|27|2|sense MSMS UPN48_class_I_Rep_2 6 513.79541015625 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 26.841 1 30.472 29.972 30.972 3.6311 0 0 0 0.40625 1 3473 3473 2.3027 0 1 + 52276 27540 32646 32663 60157 60157 0.06528288636877733 VVLAAVMP 8 Unmodified _VVLAAVMP_ 0 0 0 ENST00000372669.8_1_1:41158007-41204615:+|nuORF ENST00000372669.8_1_1:41158007-41204615:+|nuORF ENST00000372669.8_1_1:41158007-41204615:+|nuORF MSMS UPN48_class_I_Rep_1 5 400.2408447265625 2 400.24095 798.467346 NaN NaN NaN NaN NaN NaN NaN 74.839 1 78.329 77.829 78.829 3.49 0 0 0 0.40738 1 17702 17702 0.79363 0 1 52277 6400 32647 32664 60158 60158 0.0600514697333665 VVLAERGR 8 Unmodified _VVLAERGR_ 0 0 0 L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|46|3|sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|46|3|sense L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|46|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.75592041015625 2 450.274701 898.534849 0.18593 8.3721E-05 -0.62265 -0.00028036 -0.43672 -0.00019664 450.2745070027881 87.59 0.63702 87.59 87.075 87.712 0 230 57 5 0 0 0 0.82752 1 20942 20942 0.69038 0 1 18888000 52278 11326 32648 32665 60159 60159 0.08152313228515595 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.735595703125 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 114.9 1 114.9 114.4 115.4 0 0 0 0 0.38417 1 28414 28414 0 0 1 + 52279 24189 32649 32666 60160 60160 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.3897094726562 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 115.11 1 115.11 114.61 115.61 0 0 0 0 0.38417 1 28468 28468 0 0 1 + 52280 24189 32649 32666 60161 60161 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.7326049804688 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 117.77 1 117.77 117.27 118.27 0 0 0 0 0.38417 1 29204 29204 0 0 1 + 52281 24189 32649 32666 60162 60162 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_1 2 569.38818359375 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 111.05 1 114.63 114.13 115.13 3.572 0 0 0 0.38417 1 27383 27383 0 0 1 + 52282 24189 32649 32666 60163 60163 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_2 3 569.3895874023438 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 68.84 1 72.11 71.61 72.61 3.2696 0 0 0 0.38417 1 16683 16683 0 0 1 + 52283 24189 32649 32666 60164 60164 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_2 3 569.389404296875 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 71.76 1 75.05 74.55 75.55 3.2899 0 0 0 0.38417 1 17558 17558 0 0 1 + 52284 24189 32649 32666 60165 60165 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_2 3 569.3892211914062 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 72.572 1 75.87 75.37 76.37 3.2971 0 0 0 0.38417 1 17796 17796 0 0 1 + 52285 24189 32649 32666 60166 60166 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN47_class_I_Rep_3 4 569.2564086914062 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 69.376 1 72.58 72.08 73.08 3.2044 0 0 0 0.38417 1 16912 16912 0 0 1 + 52286 24189 32649 32666 60167 60167 0.2016030712156862 VVLALVALAIR 11 Unmodified _VVLALVALAIR_ 0 0 0 REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense REV__L1M2_dup236|chr1:100046526-100047417:-|1.1465391715107949|0.0715373787896092|4.0|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_2 6 569.3899536132812 2 569.389534 1136.76451 NaN NaN NaN NaN NaN NaN NaN 71.187 1 74.738 74.238 75.238 3.5505 0 0 0 0.38417 1 16593 16593 0 0 1 + 52287 24189 32649 32666 60168 60168 0.2016030712156862 VVLAVLGPL 9 Unmodified _VVLAVLGPL_ 0 0 0 L1ME1_dup2841|chr2:24518065-24519179:+|3.076683611967824|0.0314654226894617|6.61|151.0|45|1|anti-sense;L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|84|1|anti-sense L1ME1_dup2841|chr2:24518065-24519179:+|3.076683611967824|0.0314654226894617|6.61|151.0|45|1|anti-sense L1ME1_dup2841|chr2:24518065-24519179:+|3.076683611967824|0.0314654226894617|6.61|151.0|45|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79931640625 2 440.796946 879.57934 0.16164 7.125E-05 2.1115 0.00093074 2.2731 0.001002 440.79931171849546 85.97 0.44569 85.97 85.829 86.275 0 63 44 2 0 0 0 0.48414 1 20604 20604 2.3027 0 1 142890 52288 10852 32650 32667 60169 60169 0.1347332432198982 VVLCLDCH 8 Unmodified _VVLCLDCH_ 0 0 0 REV__nc|ENSG00000124523|Q9NXA8-4|SIRT5 REV__nc|ENSG00000124523|Q9NXA8-4|SIRT5 MSMS UPN48_class_I_Rep_3 7 451.2166442871094 2 451.217149 900.419744 NaN NaN NaN NaN NaN NaN NaN 79.141 1 82.783 82.283 83.283 3.6423 0 0 0 0.40738 1 18756 18756 0.79363 0 1 + 52289 18811 32651 32668 60170 60170 -0.03444875289164884 VVLEIPAA 8 Unmodified _VVLEIPAA_ 0 0 0 nc|ENSG00000105928|O60443-3|GSDME;ENST00000493723.5_1_7:24756537-24789393:-|nuORF;ENSG00000105928|ENST00000645220|GSDME nc|ENSG00000105928|O60443-3|GSDME nc|ENSG00000105928|O60443-3|GSDME MSMS UPN47_class_I_Rep_1 2 406.2490234375 2 406.249829 810.485105 NaN NaN NaN NaN NaN NaN NaN 82.04 1 85.552 85.052 86.052 3.5122 0 0 0 0.40581 1 20490 20490 2.8892 0 1 52290 1769 32652 32669 60171 60171 0.07228185499832307 VVLFCFKL 8 Unmodified _VVLFCFKL_ 0 0 0 REV__L1PA3_dup5523|chr8:102316941-102323098:+|1.5502680642748126|0.1332636577171125|3.54|151.0|273|2|anti-sense REV__L1PA3_dup5523|chr8:102316941-102323098:+|1.5502680642748126|0.1332636577171125|3.54|151.0|273|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 484.271240234375 2 484.785524 967.556496 0.25854 0.00012533 1.8134 0.00087913 2.072 0.0010045 484.7875859927627 43.502 0.30755 43.502 43.313 43.621 0 40 30 2 0 0 0 0.72333 1 8660 8660 6.3541 0 1 82401 + 52291 29545 32653 32670 60172 60172 0.07141981932875296 VVLFNVLHLSL 11 Unmodified _VVLFNVLHLSL_ 0 0 0 L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|69|3|anti-sense L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|69|3|anti-sense L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|69|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 626.89013671875 2 627.384448 1252.75434 0.60287 0.00037823 -0.16884 -0.00010593 0.43402 0.0002723 627.3854737195433 105.88 0.052826 109.58 109.55 109.6 3.702 13 7 3 0 0 0 22.551 1 24979 24979 1.1933 0 1 100060 52292 12109 32654 32671 60173 60173 0.13807699396375028 VVLICIPW 8 Unmodified _VVLICIPW_ 0 0 0 L1M5_dup31303|chrX:47460275-47460980:+|1.265634191297523|0.1083218782966039|3.55|151.0|41|3|anti-sense L1M5_dup31303|chrX:47460275-47460980:+|1.265634191297523|0.1083218782966039|3.55|151.0|41|3|anti-sense L1M5_dup31303|chrX:47460275-47460980:+|1.265634191297523|0.1083218782966039|3.55|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_1 2 471.7767028808594 2 471.777699 941.540846 NaN NaN NaN NaN NaN NaN NaN 23.399 1 27.103 26.603 27.603 3.7042 0 0 0 0.40738 1 2886 2886 0.79363 0 1 52293 9140 32655 32672 60174 60174 0.06773695415813563 VVLIFWKL 8 Unmodified _VVLIFWKL_ 0 0 0 L1M4_dup5923|chr5:131668973-131670173:+|1.3627411743132487|0.0501179866177172|4.77|151.0|5|1|sense L1M4_dup5923|chr5:131668973-131670173:+|1.3627411743132487|0.0501179866177172|4.77|151.0|5|1|sense L1M4_dup5923|chr5:131668973-131670173:+|1.3627411743132487|0.0501179866177172|4.77|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 509.3262023925781 2 509.328414 1016.64227 NaN NaN NaN NaN NaN NaN NaN 68.314 1 71.765 71.265 72.265 3.4517 0 0 0 0.40746 1 15765 15765 0.69038 0 1 52294 8895 32656 32673 60175 60175 0.13461890110022523 VVLIGMRWYLI 11 Unmodified _VVLIGMRWYLI_ 0 0 0 L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|180|3|anti-sense L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|180|3|anti-sense L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|180|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 455.5109558105469 3 454.93706 1361.78935 0.091747 4.1739E-05 1.6608 0.00075558 1.7526 0.00079732 455.27188903558147 43.34 0.13074 47.102 47.052 47.183 3.7617 11 8 2 0 0 0 22.551 1 8128 8128 2.6312 0.19645 1 81066 52295 14987 32657 32674 60176 60176 0.12292618932679034 VVLIGMRWYLI 11 Unmodified _VVLIGMRWYLI_ 0 0 0 L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|180|3|anti-sense L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|180|3|anti-sense L1PA8A_dup856|chr5:60078405-60081729:-|1.3234133058063366|0.0171969913031418|6.27|148.0|180|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 454.93706 1361.78935 0.031865 1.4497E-05 2.5623 0.0011657 2.5941 0.0011802 454.9381232241868 43.933 0.15705 47.446 47.352 47.509 3.5132 0.17191 0.0005926 NaN 2.6312 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 87115 52296 14987 32657 32674 0.12292618932679034 VVLKLTNL 8 Unmodified _VVLKLTNL_ 0 0 0 MSTA-int_dup974|chr5:69696493-69698114:+|2.567009887921541|0.0310491314193017|6.37|151.0|33|2|sense MSTA-int_dup974|chr5:69696493-69698114:+|2.567009887921541|0.0310491314193017|6.37|151.0|33|2|sense MSTA-int_dup974|chr5:69696493-69698114:+|2.567009887921541|0.0310491314193017|6.37|151.0|33|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.2989196777344 2 450.299853 898.585153 -0.5556 -0.00025019 -0.58039 -0.00026135 -1.136 -0.00051154 450.2993993201954 33.976 0.78178 37.416 37.084 37.866 3.4398 103 51 3 0 0 0 0.82752 1 6207 6207 0 0 1 153900 52297 16565 32658 32675 60177 60177 0.13180422833636385 VVLLKAAP 8 Unmodified _VVLLKAAP_ 0 0 0 LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 405.7744445800781 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 56.122 1 56.122 55.622 56.622 0 0 0 0 0.40798 1 12228 12228 0 0 1 52298 15647 32659 32676 60178 60178 0.12508768633449563 VVLLKAAP 8 Unmodified _VVLLKAAP_ 0 0 0 LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 405.7746887207031 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 56.313 1 56.313 55.813 56.813 0 0 0 0 0.40798 1 12277 12277 0 0 1 52299 15647 32659 32676 60179 60179 0.12508768633449563 VVLLKAAP 8 Unmodified _VVLLKAAP_ 0 0 0 LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 405.77459716796875 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 45.146 1 48.846 48.346 49.346 3.6999 0 0 0 0.40798 1 9455 9455 0 0 1 52300 15647 32659 32676 60180 60180 0.12508768633449563 VVLLKAAP 8 Unmodified _VVLLKAAP_ 0 0 0 LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense LTR48_dup712|chr12:11154275-11154958:-|1.2943803209871627|0.0567608313156075|4.51|151.0|7|1|sense MSMS UPN48_class_I_Rep_2 6 405.7994689941406 2 405.776014 809.537475 NaN NaN NaN NaN NaN NaN NaN 40.981 1 44.732 44.232 45.232 3.7508 0 0 0 0.40798 1 7438 7438 0 0 1 52301 15647 32659 32676 60181 60181 0.12508768633449563 VVLLKLPLLL 10 Unmodified _VVLLKLPLLL_ 0 0 0 ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|2|intron;ENSG00000186407|ENST00000392619|CD300E ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|2|intron ENSG00000186407.7,CD300E,chr17,-,I2.1,74617466,74619096|24|17.55|2|intron MSMS UPN46_class_I_Rep_3 1 560.9077758789062 2 560.907028 1119.7995 NaN NaN NaN NaN NaN NaN NaN 60.011 1 60.011 59.511 60.511 0 0 0 0 0.53105 1 13294 13294 0 0 1 52302 5153 32660 32677 60182 60182 0.24439549929570603 VVLLKPLAI 9 Unmodified _VVLLKPLAI_ 0 0 0 REV__ENST00000206423.7_2_3:112318632-112318818:-|nuORF REV__ENST00000206423.7_2_3:112318632-112318818:-|nuORF MSMS UPN48_class_I_Rep_1 5 483.3398132324219 2 483.341521 964.668489 NaN NaN NaN NaN NaN NaN NaN 114.04 1 117.67 117.17 118.17 3.6301 0 0 0 0.4029 1 27715 27715 0 0 1 + 52303 21469 32661 32678 60183 60183 0.1847415928149303 VVLLLLLVPL 10 Unmodified _VVLLLLLVPL_ 0 0 0 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 REV__nc|ENSG00000107821|Q96I82-2|KAZALD1 MSMS UPN46_class_I_Rep_3 1 546.131103515625 2 546.393754 1090.77295 NaN NaN NaN NaN NaN NaN NaN 52.376 1 52.376 51.876 52.876 0 0 0 0 0.53105 1 11196 11196 0 0 1 + 52304 18361 32662 32679 60184 60184 0.23119861038208 VVLLLLPK 8 Unmodified _VVLLLLPK_ 0 0 0 REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 447.8218994140625 2 447.822964 893.631375 0.14429 6.4618E-05 -0.93047 -0.00041669 -0.78618 -0.00035207 447.8225685252051 108.6 0.061485 112.27 112.23 112.29 3.6746 6 2 3 0 0 0 0.82752 1 25765 25765 0 0 1 3340400 + 52305 23225 32663 32680 60185 60185 0.18030487735734368 VVLLLLPK 8 Unmodified _VVLLLLPK_ 0 0 0 REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 447.822964 893.631375 0.0033843 1.5156E-06 -2.5465 -0.0011404 -2.5431 -0.0011388 447.82182656521286 108.81 0.65614 112.34 112.07 112.73 3.5333 -0.0081234 -8.9973E-05 NaN 0 129 77 2 NaN NaN NaN NaN 0 NaN NaN 0 8494500 + 52306 23225 32663 32680 0.18030487735734368 VVLLLLPK 8 Unmodified _VVLLLLPK_ 0 0 0 REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 447.822964 893.631375 -0.20525 -9.1917E-05 -2.342 -0.0010488 -2.5472 -0.0011407 447.82189373145684 108.77 0.64958 112.31 112.07 112.72 3.5382 -0.038079 9.3156E-05 NaN 0 129 74 2 NaN NaN NaN NaN 0 NaN NaN 0 9367500 + 52307 23225 32663 32680 0.18030487735734368 VVLLLLPK 8 Unmodified _VVLLLLPK_ 0 0 0 REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 447.822964 893.631375 0.14429 6.4618E-05 -0.93047 -0.00041669 -0.78618 -0.00035207 447.8225685252051 108.6 0.061485 112.27 112.23 112.29 3.6746 -0.077859 0.0013574 NaN 0 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 3340400 + 52308 23225 32663 32680 0.18030487735734368 VVLLLLPK 8 Unmodified _VVLLLLPK_ 0 0 0 REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 447.822964 893.631375 0.16132 7.2241E-05 -2.5299 -0.001133 -2.3686 -0.0010607 447.8218795991764 108.8 0.46453 112.47 112.18 112.65 3.6751 0.12406 -7.5169E-05 NaN 0 99 51 3 NaN NaN NaN NaN 0 NaN NaN 0 12248000 + 52309 23225 32663 32680 0.18030487735734368 VVLLMGLARVV 11 Unmodified _VVLLMGLARVV_ 0 0 0 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 MSMS UPN48_class_I_Rep_3 7 585.3751831054688 2 585.375569 1168.73659 NaN NaN NaN NaN NaN NaN NaN 28.096 1 31.839 31.339 32.339 3.7424 0 0 0 0.38417 1 3777 3777 0 0 1 52310 4822 32664 32681 60186 60186 0.15896660869839252 VVLLPGSY 8 Unmodified _VVLLPGSY_ 0 0 0 REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 424.2496032714844 2 424.249829 846.485105 0.11555 4.9024E-05 0.29721 0.00012609 0.41277 0.00017512 424.24978656159385 96.665 1.0506 100.44 100.1 101.15 3.7767 345 143 3 0 0 0 0.82752 3 23904 23904;23963;24022 5.7604 0 1 4073200 + 52311 22649 32665 32682 60187;60188;60189 60187 0.055721854998637355 VVLLPGSY 8 Unmodified _VVLLPGSY_ 0 0 0 REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 424.2498779296875 2 424.249829 846.485105 -0.10851 -4.6037E-05 0.41533 0.0001762 0.30682 0.00013017 424.2498504523893 96.574 0.96317 100.19 99.781 100.74 3.6124 247 115 3 0 0 0 0.82752 4 23206 23206;23238;23273;23348 5.7604 0 1 2330600 + 52312 22649 32665 32682 60190;60191;60192;60193 60190 0.055721854998637355 VVLLPGSY 8 Unmodified _VVLLPGSY_ 0 0 0 REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 424.2494201660156 2 424.249829 846.485105 0.082161 3.4857E-05 0.20414 8.6606E-05 0.2863 0.00012146 424.24976669263293 96.397 0.80699 100.18 99.794 100.6 3.7804 262 105 3 0 0 0 0.82752 4 22846 22846;22876;22907;22937 10.183 0 1 2301700 + 52313 22649 32665 32682 60194;60195;60196;60197 60194 0.055721854998637355 VVLLPGSY 8 Unmodified _VVLLPGSY_ 0 0 0 REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 424.24957275390625 2 424.249829 846.485105 0.11636 4.9365E-05 0.076322 3.238E-05 0.19268 8.1745E-05 424.2497074806885 96.412 0.99465 100.32 99.91 100.9 3.9084 291 136 3 0 0 0 0.82752 5 22794 22794;22804;22834;22895;22932 5.7604 0 1 2806400 + 52314 22649 32665 32682 60198;60199;60200;60201;60202 60198 0.055721854998637355 VVLLPIGKQL 10 Unmodified _VVLLPIGKQL_ 0 0 0 REV__ENST00000515095.5_1_5:96228145-96238354:+|nuORF REV__ENST00000515095.5_1_5:96228145-96238354:+|nuORF MSMS UPN48_class_I_Rep_3 7 540.3634643554688 2 540.362985 1078.71142 NaN NaN NaN NaN NaN NaN NaN 43.6 1 47.239 46.739 47.739 3.6385 0 0 0 0.53105 1 8133 8133 0 0 1 + 52315 20053 32666 32683 60203 60203 0.17520929338957103 VVLLPPKC 8 Unmodified _VVLLPPKC_ 0 0 0 REV__L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|110|3|anti-sense REV__L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|110|3|anti-sense MSMS UPN47_class_I_Rep_1 2 434.77947998046875 2 434.769874 867.525196 NaN NaN NaN NaN NaN NaN NaN 34.15 1 37.836 37.336 38.336 3.6859 0 0 0 0.40738 1 6107 6107 0.79363 0 1 + 52316 26035 32667 32684 60204 60204 0.08613408898770558 VVLLRTAALR 10 Unmodified _VVLLRTAALR_ 0 0 0 ENST00000258439.7_1_2:96918471-96918519:-|nuORF ENST00000258439.7_1_2:96918471-96918519:-|nuORF ENST00000258439.7_1_2:96918471-96918519:-|nuORF MSMS UPN48_class_I_Rep_2 6 556.7435913085938 2 556.369133 1110.72371 NaN NaN NaN NaN NaN NaN NaN 112.76 1 116.42 115.92 116.92 3.6648 0 0 0 0.53105 1 26879 26879 0 0 1 52317 5938 32668 32685 60205 60205 0.17277965801963546 VVLLVYHW 8 Unmodified _VVLLVYHW_ 0 0 0 nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR nc|ENSG00000103429|Q9NZS9-2|BFAR MSMS UPN47_class_I_Rep_3 4 514.7989501953125 2 514.80002 1027.58549 NaN NaN NaN NaN NaN NaN NaN 28.137 1 31.47 30.97 31.97 3.3337 0 0 0 0.40738 1 4371 4371 0.79363 0 1 52318 1659 32669 32686 60206 60206 0.07279842553521121 VVLMFWHYH 9 Unmodified _VVLMFWHYH_ 0 0 0 L1M4b_dup2471|chrX:73995041-73996330:+|1.8282247781589465|0.2643182724132705|2.79|151.0|83|2|anti-sense L1M4b_dup2471|chrX:73995041-73996330:+|1.8282247781589465|0.2643182724132705|2.79|151.0|83|2|anti-sense L1M4b_dup2471|chrX:73995041-73996330:+|1.8282247781589465|0.2643182724132705|2.79|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.8107299804688 2 616.307687 1230.60082 0.40137 0.00024737 1.6808 0.0010359 2.0822 0.0012833 616.3086417823271 46.057 0.60248 49.815 49.577 50.179 3.7579 56 38 2 0 0 0 0.48414 1 8961 8961 2.3027 0.24298 1 116320 52319 8997 32670 32687 60207 60207 -0.005256139209450339 VVLMYPPKV 9 Unmodified _VVLMYPPKV_ 0 0 0 REV__nc|ENSG821|P63135|ERVK-7_pol REV__nc|ENSG821|P63135|ERVK-7_pol MULTI-SECPEP UPN47_class_I_Rep_3 4 522.8080444335938 2 523.309364 1044.60417 0.32102 0.00016799 0.25287 0.00013233 0.57389 0.00030032 523.3094529516785 63.995 0.3845 67.169 67.075 67.459 3.1741 33 25 2 0 0 0 0.12235 1 15264 15264 4.756 0.81161 1 171740 + 52320 32139 32671 32688 60208 60208 0.083656361330668 VVLMYPPKV 9 Unmodified _VVLMYPPKV_ 0 0 0 REV__nc|ENSG821|P63135|ERVK-7_pol REV__nc|ENSG821|P63135|ERVK-7_pol MULTI-MATCH UPN47_class_I_Rep_1 2 2 523.309364 1044.60417 0.2995 0.00015673 -0.69159 -0.00036192 -0.39209 -0.00020518 523.3093366382448 63.659 0.078461 67.014 66.969 67.048 3.3557 -0.14624 -0.00094398 NaN 4.756 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 95206 + 52321 32139 32671 32688 0.083656361330668 VVLMYPPKV 9 Unmodified _VVLMYPPKV_ 0 0 0 REV__nc|ENSG821|P63135|ERVK-7_pol REV__nc|ENSG821|P63135|ERVK-7_pol MULTI-MATCH UPN47_class_I_Rep_2 3 2 523.309364 1044.60417 -0.0077482 -4.0547E-06 0.90022 0.0004711 0.89248 0.00046704 523.3098937591362 64.043 0.080826 67.298 67.265 67.345 3.2556 0.13776 0.00072204 NaN 4.756 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 37366 + 52322 32139 32671 32688 0.083656361330668 VVLNRGLLLHF 11 Unmodified _VVLNRGLLLHF_ 0 0 0 REV__ENST00000366560.3_1_1:241669440-241671994:-|nuORF REV__ENST00000366560.3_1_1:241669440-241671994:-|nuORF MSMS UPN48_class_I_Rep_1 5 640.8955688476562 2 640.895515 1279.77648 NaN NaN NaN NaN NaN NaN NaN 51.665 1 55.188 54.688 55.688 3.5227 0 0 0 0.38417 1 10678 10678 1.3295 0.13619 1 + 52323 21917 32672 32689 60209 60209 0.14777923864789955 VVLPIKML 8 Unmodified _VVLPIKML_ 0 0 0 REV__nc|ENSG00000189007|Q7Z6V5-2|ADAT2 REV__nc|ENSG00000189007|Q7Z6V5-2|ADAT2 MSMS UPN47_class_I_Rep_3 4 456.802490234375 2 456.801174 911.587796 NaN NaN NaN NaN NaN NaN NaN 31.962 1 35.261 34.761 35.761 3.2991 0 0 0 0.40604 1 5514 5514 2.5775 0 1 + 52324 20993 32673 32690 60210 60210 0.1284655496697269 VVLPKLSS 8 Unmodified _VVLPKLSS_ 0 0 0 L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|76|2|anti-sense L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|76|2|anti-sense L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|76|2|anti-sense MSMS UPN48_class_I_Rep_2 6 421.7691955566406 2 421.770929 841.527304 NaN NaN NaN NaN NaN NaN NaN 87.408 1 91.136 90.636 91.636 3.7279 0 0 0 0.40746 1 20797 20797 0.69038 0 1 52325 15472 32674 32691 60211 60211 0.10020160908231901 VVLPRGKSLD 10 Unmodified _VVLPRGKSLD_ 0 0 0 nc|ENSG00000197114|Q8N5A5-4|ZGPAT;nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT nc|ENSG00000197114|Q8N5A5-4|ZGPAT nc|ENSG00000197114|Q8N5A5-4|ZGPAT MULTI-MSMS UPN48_class_I_Rep_1 5 542.3294677734375 2 542.329673 1082.64479 0.50614 0.00027449 0.051667 2.802E-05 0.5578 0.00030251 542.3297650325726 57.699 0.25963 61.193 61.044 61.304 3.4942 32 23 2 0 0 0 0.56354 1 12480 12480 1.3295 0 1 279000 52326 5348 32675 32692 60212 60212 0.10677693777029162 VVLQQLGF 8 Unmodified _VVLQQLGF_ 0 0 0 REV__ENSG00000063127|ENST00000335875|SLC6A16 REV__ENSG00000063127|ENST00000335875|SLC6A16 MULTI-MSMS UPN46_class_I_Rep_3 1 452.2691955566406 2 452.268553 902.522553 0.15232 6.889E-05 1.5746 0.00071214 1.7269 0.00078103 452.2691463466343 40.05 0.038124 40.05 40.038 40.077 0 4 2 2 0 0 0 0.82752 1 7753 7753 2.8892 0 1 1509300 + 52327 17729 32676 32693 60213 60213 0.06739276765483737 VVLQSWMV 8 Unmodified _VVLQSWMV_ 0 0 0 REV__HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|49|3|anti-sense REV__HERVL-int_dup239|chr2:88581793-88582614:+|1.2476832223946344|0.3659556551447221|1.77|151.0|49|3|anti-sense MSMS UPN46_class_I_Rep_3 1 481.261962890625 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 112.94 1 112.94 112.44 113.44 0 0 0 0 0.40738 1 27890 27890 0.79363 0 1 + 52328 23883 32677 32694 60214 60214 0.02843917030781995 VVLRGKFIG 9 Unmodified _VVLRGKFIG_ 0 0 0 L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|54|3|sense L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|54|3|sense L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|54|3|sense MSMS UPN48_class_I_Rep_2 6 494.74737548828125 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 14.076 1 17.73 17.23 18.23 3.6542 0 0 0 0.4029 1 378 378 0 0 1 52329 15155 32678 32695 60215 60215 0.12862933819144473 VVLRGKFIG 9 Unmodified _VVLRGKFIG_ 0 0 0 L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|54|3|sense L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|54|3|sense L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|54|3|sense MSMS UPN48_class_I_Rep_3 7 494.8191223144531 2 494.818744 987.622936 NaN NaN NaN NaN NaN NaN NaN 15.156 1 18.696 18.196 19.196 3.5392 0 0 0 0.4029 1 551 551 0 0 1 52330 15155 32678 32695 60216 60216 0.12862933819144473 VVLRLAATAAT 11 Unmodified _VVLRLAATAAT_ 0 0 0 ENST00000585306.5_1_17:38209858-38217407:-|nuORF ENST00000585306.5_1_17:38209858-38217407:-|nuORF ENST00000585306.5_1_17:38209858-38217407:-|nuORF MSMS UPN47_class_I_Rep_1 2 543.3378295898438 2 543.337498 1084.66044 NaN NaN NaN NaN NaN NaN NaN 41.468 1 45.146 44.646 45.646 3.6779 0 0 0 0.38417 1 8330 8330 0 0 1 52331 7576 32679 32696 60217 60217 0.12149980294043417 VVLRLRIT 8 Unmodified _VVLRLRIT_ 0 0 0 REV__L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|24|2|sense REV__L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|24|2|sense MSMS UPN48_class_I_Rep_3 7 485.33148193359375 2 485.332019 968.649485 NaN NaN NaN NaN NaN NaN NaN 24.965 1 28.734 28.234 29.234 3.769 0 0 0 0.40798 1 2970 2970 0 0 1 + 52332 27230 32680 32697 60218 60218 0.16390622710446223 VVLRQKFMV 9 Unmodified _VVLRQKFMV_ 0 0 0 L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|87|2|sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|87|2|sense L1PBa_dup1275|chrX:64929193-64934093:-|6.134413781883998|0.2585712552877928|4.57|151.0|87|2|sense MSMS UPN46_class_I_Rep_3 1 560.3403930664062 2 560.338987 1118.66342 NaN NaN NaN NaN NaN NaN NaN 99.323 1 99.323 98.823 99.823 0 0 0 0 0.4007 1 24193 24193 0.52476 0 1 52333 15368 32681 32698 60219 60219 0.10883532147249753 VVLSHYIL 8 Unmodified _VVLSHYIL_ 0 0 0 MLT1F2_dup1449|chr4:53436149-53436640:-|1.4580588279599838|0.1694050396632392|3.11|151.0|5|1|sense MLT1F2_dup1449|chr4:53436149-53436640:-|1.4580588279599838|0.1694050396632392|3.11|151.0|5|1|sense MLT1F2_dup1449|chr4:53436149-53436640:-|1.4580588279599838|0.1694050396632392|3.11|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 472.2821350097656 2 472.284203 942.553853 NaN NaN NaN NaN NaN NaN NaN 93.25 1 97.142 96.642 97.642 3.8914 0 0 0 0.40604 1 22094 22094 2.5775 0 1 52334 16392 32682 32699 60220 60220 0.08027849799555042 VVLTPTYS 8 Unmodified _VVLTPTYS_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ALS2|p.L625Ffs*23|1|0.09|ENSG00000003393|chr2:201746689-201746690|-/A|frameshift_variant;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS UPN46_class_I_Rep_3 1 440.2445373535156 2 440.244744 878.474934 0.16009 7.0478E-05 -0.51899 -0.00022848 -0.3589 -0.000158 440.24447397809485 100.61 0.042664 100.61 100.58 100.62 0 7 4 2 0 0 0 0.82752 1 24530 24530 9.3474 0 1 1242100 52335 678 32683 32700 60221 60221 0.030835777746005988 VVLTPTYS 8 Unmodified _VVLTPTYS_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ALS2|p.L625Ffs*23|1|0.09|ENSG00000003393|chr2:201746689-201746690|-/A|frameshift_variant;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MSMS UPN48_class_I_Rep_2 6 440.244140625 2 440.244744 878.474934 NaN NaN NaN NaN NaN NaN NaN 96.645 1 100.43 99.926 100.93 3.7804 0 0 0 0.40625 1 22960 22960 2.3027 0 1 52336 678 32683 32700 60222 60222 0.030835777746005988 VVLVPIIIL 9 Unmodified _VVLVPIIIL_ 0 0 0 REV__ENST00000527146.1_2_11:308871-309162:+|nuORF REV__ENST00000527146.1_2_11:308871-309162:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 489.8498840332031 2 489.851722 977.68889 0.26645 0.00013052 -3.6234 -0.0017749 -3.3569 -0.0016444 489.8498240799165 107.3 0.054878 110.98 110.95 111 3.6724 8 4 2 0 0 0 0.50015 1 26296 26296 0.6015 0 1 8724200 + 52337 20846 32684 32701 60223 60223 0.19915329941329674 VVLVPIIIL 9 Unmodified _VVLVPIIIL_ 0 0 0 REV__ENST00000527146.1_2_11:308871-309162:+|nuORF REV__ENST00000527146.1_2_11:308871-309162:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 489.851722 977.68889 0.26645 0.00013052 -3.6234 -0.0017749 -3.3569 -0.0016444 489.8498240799165 107.3 0.054878 110.98 110.95 111 3.6724 0.032205 -0.0011265 NaN 0.6015 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 8724200 + 52338 20846 32684 32701 0.19915329941329674 VVLVPIIIL 9 Unmodified _VVLVPIIIL_ 0 0 0 REV__ENST00000527146.1_2_11:308871-309162:+|nuORF REV__ENST00000527146.1_2_11:308871-309162:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 489.851722 977.68889 0.15128 7.4105E-05 -2.4019 -0.0011766 -2.2506 -0.0011025 489.850543336691 107.28 0.039108 110.91 110.89 110.93 3.6299 -0.032205 7.0169E-05 NaN 0.6015 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1178600 + 52339 20846 32684 32701 0.19915329941329674 VVLVVISPLL 10 Unmodified _VVLVVISPLL_ 0 0 0 L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|329|3|anti-sense L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|329|3|anti-sense L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|329|3|anti-sense MSMS UPN46_class_I_Rep_3 1 526.361083984375 2 526.359911 1050.70527 NaN NaN NaN NaN NaN NaN NaN 36.588 1 36.588 36.088 37.088 0 0 0 0 0.53105 1 6798 6798 0 0 1 52340 14317 32685 32702 60224 60224 0.18194411107424457 VVLVVISPLL 10 Unmodified _VVLVVISPLL_ 0 0 0 L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|329|3|anti-sense L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|329|3|anti-sense L1PA4_dup1278|chr2:117923684-117929272:+|1.043348711583581|0.1762772737971231|2.57|149.0|329|3|anti-sense MSMS UPN48_class_I_Rep_2 6 526.7969360351562 2 526.359911 1050.70527 NaN NaN NaN NaN NaN NaN NaN 35.579 1 39.267 38.767 39.767 3.6877 0 0 0 0.53105 1 5882 5882 0 0 1 52341 14317 32685 32702 60225 60225 0.18194411107424457 VVLWCQKR 8 Unmodified _VVLWCQKR_ 0 0 0 REV__MER72_dup566|chr11:57735511-57736183:-|1.1534063954769862|0.156689526250926|2.88|151.0|35|1|anti-sense REV__MER72_dup566|chr11:57735511-57736183:-|1.1534063954769862|0.156689526250926|2.88|151.0|35|1|anti-sense MSMS UPN46_class_I_Rep_3 1 516.29541015625 2 516.294579 1030.57461 NaN NaN NaN NaN NaN NaN NaN 83.031 1 83.031 82.531 83.531 0 0 0 0 0.40738 1 19698 19698 0.79363 0 1 + 52342 31553 32686 32703 60226 60226 0.06054116907557727 VVLWTLALI 9 Unmodified _VVLWTLALI_ 0 0 0 L1ME3_dup4980|chrX:19829056-19829415:+|1.1476593071100831|0.0019312311611738|9.21|151.0|19|2|anti-sense L1ME3_dup4980|chrX:19829056-19829415:+|1.1476593071100831|0.0019312311611738|9.21|151.0|19|2|anti-sense L1ME3_dup4980|chrX:19829056-19829415:+|1.1476593071100831|0.0019312311611738|9.21|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_1 5 514.3290405273438 2 514.331153 1026.64775 NaN NaN NaN NaN NaN NaN NaN 71.494 1 74.96 74.46 75.46 3.466 0 0 0 0.38478 1 16718 16718 4.3292 0 1 52343 12597 32687 32704 60227 60227 0.13549568901839848 VVMDIAYYQA 10 Unmodified _VVMDIAYYQA_ 0 0 0 ENST00000489156.1_1_6:152599163-152623219:-|nuORF ENST00000489156.1_1_6:152599163-152623219:-|nuORF ENST00000489156.1_1_6:152599163-152623219:-|nuORF MSMS UPN47_class_I_Rep_1 2 586.7862548828125 2 586.78645 1171.55835 NaN NaN NaN NaN NaN NaN NaN 84.208 1 87.773 87.273 88.273 3.5655 0 0 0 0.53105 1 21069 21069 1.4819 0 1 52344 7055 32688 32705 60228 60228 -0.02057053839848777 VVMDRSNEHPL 11 Unmodified _VVMDRSNEHPL_ 0 0 0 REV__MSTA_dup7917|chr6:157113342-157113732:-|1.2048822319828612|0.0163566949211357|6.2|151.0|2|1|sense REV__MSTA_dup7917|chr6:157113342-157113732:-|1.2048822319828612|0.0163566949211357|6.2|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 432.8851013183594 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 65.036 1 65.036 64.536 65.536 0 0 0 0 0.38417 1 14681 14681 1.4551 0 1 + 52345 31851 32689 32706 60229 60229 -0.006769608023205365 VVMHDLLEMS 10 Unmodified _VVMHDLLEMS_ 0 0 0 REV__L1MB3_dup15033|chr17:67136291-67136974:+|1.097505397668734|0.063982371680887|4.1|151.0|39|2|anti-sense REV__L1MB3_dup15033|chr17:67136291-67136974:+|1.097505397668734|0.063982371680887|4.1|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_2 6 587.2672729492188 2 587.28576 1172.55697 NaN NaN NaN NaN NaN NaN NaN 46.373 1 50.122 49.622 50.622 3.7494 0 0 0 0.53105 1 9054 9054 6.2058 0.47393 1 + 52346 25832 32690 32707 60230 60230 -0.022410112002262395 VVMHGPMVV 9 Unmodified _VVMHGPMVV_ 0 0 0 REV__ENST00000604849.1_2_X:53172048-53172363:+|nuORF REV__ENST00000604849.1_2_X:53172048-53172363:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 484.7554626464844 2 484.756441 967.498329 0.257 0.00012458 -1.0853 -0.00052609 -0.82825 -0.0004015 484.7556654837449 43.808 0.30885 43.808 43.604 43.913 0 34 29 2 0 0 0 0.37662 1 8767 8767 9.3474 2.0582 1 147480 + 52347 23227 32691 32708 60231 60231 0.013279770159442705 VVMLLFLR 8 Unmodified _VVMLLFLR_ 0 0 0 ENST00000521734.1_1_8:82391102-82391918:-|nuORF ENST00000521734.1_1_8:82391102-82391918:-|nuORF ENST00000521734.1_1_8:82391102-82391918:-|nuORF MSMS UPN48_class_I_Rep_1 5 495.8114929199219 2 495.812073 989.609594 NaN NaN NaN NaN NaN NaN NaN 65.292 1 68.746 68.246 69.246 3.4541 0 0 0 0.40738 1 14845 14845 0.79363 0 1 52348 7238 32692 32709 60232 60232 0.11437359715523598 VVMLMRNGPI 10 Unmodified _VVMLMRNGPI_ 0 0 0 REV__ENSG00000125378|ENST00000245451|BMP4 REV__ENSG00000125378|ENST00000245451|BMP4 MSMS UPN48_class_I_Rep_3 7 565.3141479492188 2 565.314654 1128.61476 NaN NaN NaN NaN NaN NaN NaN 38.055 1 41.715 41.215 42.215 3.6595 0 0 0 0.53105 1 6492 6492 1.4819 0.79152 1 + 52349 18826 32693 32710 60233 60233 0.055592955158317636 VVMVHLGG 8 Unmodified _VVMVHLGG_ 0 0 0 REV__Tigger3a_dup1913|chr5:134217762-134218116:-|1.737995876488052|0.0110267433882506|7.3|151.0|1|1|sense REV__Tigger3a_dup1913|chr5:134217762-134218116:-|1.737995876488052|0.0110267433882506|7.3|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 406.171142578125 2 406.228374 810.442194 NaN NaN NaN NaN NaN NaN NaN 84.324 1 84.324 83.824 84.824 0 0 0 0 0.40738 1 20058 20058 0.79363 0 1 + 52350 32709 32694 32711 60234 60234 0.029390921707886264 VVMVVIHN 8 Unmodified _VVMVVIHN_ 0 0 0 ENST00000532270.5_1_11:86014453-86014525:+|nuORF;ENST00000530208.1_1_11:86014453-86017318:+|nuORF ENST00000532270.5_1_11:86014453-86014525:+|nuORF ENST00000532270.5_1_11:86014453-86014525:+|nuORF MSMS UPN46_class_I_Rep_3 1 455.7611999511719 2 455.762581 909.510608 NaN NaN NaN NaN NaN NaN NaN 116.97 1 116.97 116.47 117.47 0 0 0 0 0.40738 1 28977 28977 0.79363 0 1 52351 7291 32695 32712 60235 60235 0.05223336750623275 VVMYACLPSY 10 Unmodified _VVMYACLPSY_ 0 0 0 AluSx_dup58025|chrX:1494711-1495016:-|2.167663453886421|0.0196981212522355|6.78|151.0|6|2|sense AluSx_dup58025|chrX:1494711-1495016:-|2.167663453886421|0.0196981212522355|6.78|151.0|6|2|sense AluSx_dup58025|chrX:1494711-1495016:-|2.167663453886421|0.0196981212522355|6.78|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 573.2701416015625 2 573.272121 1144.52969 NaN NaN NaN NaN NaN NaN NaN 51.372 1 54.711 54.211 55.211 3.3386 0 0 0 0.53105 1 11374 11374 6.7232 0 1 52352 294 32696 32713 60236 60236 -0.036794947406178835 VVNAKYKV 8 Unmodified _VVNAKYKV_ 0 0 0 REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|18|1|sense REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 460.78265380859375 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 43.906 1 43.906 43.406 44.406 0 0 0 0 0.40625 1 8803 8803 2.3027 0 1 + 52353 26957 32697 32714 60237 60237 0.08610965656794178 VVNATTLIY 9 Unmodified _VVNATTLIY_ 0 0 0 L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.2840270996094 2 497.2844 992.554247 -0.28576 -0.00014211 0.32468 0.00016146 0.03892 1.9354E-05 497.28452417293914 28.771 0.755 32.537 32.31 33.065 3.7662 104 66 2 0 0 0 0.3898 1 4530 4530 8.5933 0 1 138620 52354 11719 32698 32715 60238 60238 0.05767224728765541 VVNATTLIY 9 Unmodified _VVNATTLIY_ 0 0 0 L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.28436279296875 2 497.2844 992.554247 -0.15303 -7.6099E-05 0.36661 0.00018231 0.21358 0.00010621 497.2845755410013 29.08 0.80042 32.572 32.165 32.966 3.4923 98 64 2 0 0 0 0.3898 2 4582 4582;4679 8.5933 0 1 124840 52355 11719 32698 32715 60239;60240 60239 0.05767224728765541 VVNATTLIY 9 Unmodified _VVNATTLIY_ 0 0 0 L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 497.284423828125 2 497.2844 992.554247 NaN NaN NaN NaN NaN NaN NaN 29.477 1 32.969 32.469 33.469 3.4923 0 0 0 0.39428 1 4726 4726 2.0598 0 1 52356 11719 32698 32715 60241 60241 0.05767224728765541 VVNATTLIY 9 Unmodified _VVNATTLIY_ 0 0 0 L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense L1MC5a_dup14135|chr15:92994968-92996039:-|3.4474612957699065|0.45516110113975|2.92|151.0|65|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.2843322753906 2 497.2844 992.554247 -0.4165 -0.00020712 0.54523 0.00027113 0.12873 6.4015E-05 497.2846650882357 29.309 0.84001 32.632 32.242 33.082 3.3235 133 71 2 0 0 0 0.45688 2 4738 4738;4801 4.756 0 1 142510 52357 11719 32698 32715 60242;60243 60242 0.05767224728765541 VVNHYWRRC 9 Unmodified _VVNHYWRRC_ 0 0 0 REV__L1MC1_dup4882|chr5:171883541-171884922:-|1.3351671379733705|0.0637934561505426|4.39|151.0|62|2|anti-sense REV__L1MC1_dup4882|chr5:171883541-171884922:-|1.3351671379733705|0.0637934561505426|4.39|151.0|62|2|anti-sense MSMS UPN46_class_I_Rep_3 1 616.81103515625 2 616.808916 1231.60328 NaN NaN NaN NaN NaN NaN NaN 50.844 1 50.844 50.344 51.344 0 0 0 0 0.39428 1 10765 10765 2.0598 0.21551 1 + 52358 26572 32699 32716 60244 60244 -0.0032576546327618416 VVNIARYLY 9 Unmodified _VVNIARYLY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS UPN48_class_I_Rep_2 6 555.843994140625 2 555.818941 1109.62333 0.49908 0.0002774 -0.60446 -0.00033597 -0.10538 -5.857E-05 555.8184025207586 68.968 0.4317 72.489 72.233 72.664 3.5216 47 27 2 0 0 0 0.40174 1 15892 15892 7.9102 0.62092 1 120730 52359 3705 32700 32717 60245 60245 0.0729030874831551 VVNIEKYS 8 Unmodified _VVNIEKYS_ 0 0 0 REV__Tigger1_dup3996|chr5:39018393-39020720:+|2.5798590199920497|0.1475621735342286|4.13|151.0|57|3|sense REV__Tigger1_dup3996|chr5:39018393-39020720:+|2.5798590199920497|0.1475621735342286|4.13|151.0|57|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 476.32672119140625 2 476.260925 950.507297 0.051207 2.4388E-05 -0.96593 -0.00046003 -0.91472 -0.00043565 476.2602917575226 32.652 0.50288 32.652 32.307 32.81 0 44 36 2 0 0 0 0.72333 1 5565 5565 4.756 0.42677 1 99582 + 52360 32432 32701 32718 60246 60246 0.030063651776117695 VVNIENYIE 9 Unmodified _VVNIENYIE_ 0 0 0 REV__Tigger1_dup10502|chr15:94419833-94421356:+|1.8695208930929297|0.0215629095116902|6.44|150.0|6|1|sense REV__Tigger1_dup10502|chr15:94419833-94421356:+|1.8695208930929297|0.0215629095116902|6.44|150.0|6|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.7817993164062 2 546.782222 1091.54989 0.36999 0.00020231 -0.78081 -0.00042693 -0.41082 -0.00022463 546.7815989708954 37.443 0.62175 41.106 40.824 41.446 3.663 103 63 2 0 0 0 0.47197 1 6375 6375 3.5965 0.60125 1 163260 + 52361 32333 32702 32719 60247 60247 0.007777155151643456 VVNLGLIII 9 Unmodified _VVNLGLIII_ 0 0 0 REV__HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|71|3|anti-sense REV__HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|71|3|anti-sense MSMS UPN47_class_I_Rep_2 3 477.3243408203125 2 477.323328 952.632104 NaN NaN NaN NaN NaN NaN NaN 96.355 1 99.834 99.334 100.33 3.4791 0 0 0 0.4029 1 23679 23679 0 0 1 + 52362 23378 32703 32720 60248 60248 0.1538928238481958 VVNLGLIII 9 Unmodified _VVNLGLIII_ 0 0 0 REV__HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|71|3|anti-sense REV__HAL1_dup17407|chr13:36959483-36960474:+|1.2935472399549086|0.1190784209344009|3.44|150.0|71|3|anti-sense MSMS UPN48_class_I_Rep_1 5 477.32476806640625 2 477.323328 952.632104 NaN NaN NaN NaN NaN NaN NaN 96.343 1 99.956 99.456 100.46 3.6124 0 0 0 0.4029 1 23207 23207 0 0 1 + 52363 23378 32703 32720 60249 60249 0.1538928238481958 VVNLKPSF 8 Unmodified _VVNLKPSF_ 0 0 0 REV__L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|38|3|sense REV__L1MEc_dup357|chr1:52506471-52507541:-|1.3918079833398227|0.028010793258294|5.63|151.0|38|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 452.2689208984375 2 452.268553 902.522553 -0.21453 -9.7024E-05 0.96631 0.00043703 0.75179 0.00034001 452.26904258672414 23.452 0.072433 23.452 23.425 23.497 0 9 5 3 0 0 0 0.82752 1 2948 2948 5.7604 0 1 354260 + 52364 28442 32704 32721 60250 60250 0.06739276765472368 VVNRGRAL 8 Unmodified _VVNRGRAL_ 0 0 0 REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 442.77459716796875 2 442.774868 883.535184 -0.36567 -0.00016191 1.7448 0.00077256 1.3791 0.00061065 442.7751079330602 17.775 0.29576 17.775 17.598 17.893 0 52 34 2 0 0 0 0.82752 1 1436 1436 0.69038 0 1 38180 + 52365 20798 32705 32722 60251 60251 0.08875732948376935 VVNSIKWKK 9 Unmodified _VVNSIKWKK_ 0 0 0 L1PA6_dup1562|chr4:83241625-83246952:+|4.754032741513817|0.254279571852269|4.22|151.0|109|3|sense L1PA6_dup1562|chr4:83241625-83246952:+|4.754032741513817|0.254279571852269|4.22|151.0|109|3|sense L1PA6_dup1562|chr4:83241625-83246952:+|4.754032741513817|0.254279571852269|4.22|151.0|109|3|sense MSMS UPN47_class_I_Rep_2 3 551.3430786132812 2 551.342584 1100.67061 NaN NaN NaN NaN NaN NaN NaN 106.65 1 110.18 109.68 110.68 3.5345 0 0 0 0.4007 1 25825 25825 0.52476 0 1 52366 14565 32706 32723 60252 60252 0.12430588019310562 VVNVELSF 8 Unmodified _VVNVELSF_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|226|2|anti-sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|226|2|anti-sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|226|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 453.7856140136719 2 453.750193 905.485833 0.071168 3.2293E-05 0.66914 0.00030362 0.74031 0.00033591 453.75031534210626 74.72 0.21836 78.114 77.985 78.203 3.3937 30 19 2 0 0 0 0.82752 1 18375 18375 2.3027 0 1 90204 52367 8220 32707 32724 60253 60253 0.029309801489148413 VVNYCIIFYNY 11 Unmodified _VVNYCIIFYNY_ 0 0 0 REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 471.23046875 3 470.89693 1409.66896 0.10526 4.9569E-05 -0.46558 -0.00021924 -0.36032 -0.00016967 470.896808422673 57.74 0.50978 61.177 60.856 61.366 3.437 57 37 3 0 0 0 0.65891 1 13298 13298 2.4348 2.4348 1 108730 + 52368 31114 32708 32725 60254 60254 -0.019488338515884607 VVNYCIIFYNY 11 Unmodified _VVNYCIIFYNY_ 0 0 0 REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 470.89693 1409.66896 0.10526 4.9569E-05 -0.46558 -0.00021924 -0.36032 -0.00016967 470.896808422673 57.74 0.50978 61.177 60.856 61.366 3.437 -0.028825 8.6578E-05 NaN 2.4348 57 37 3 NaN NaN NaN NaN 0 NaN NaN 0 108730 + 52369 31114 32708 32725 -0.019488338515884607 VVNYCIIFYNY 11 Unmodified _VVNYCIIFYNY_ 0 0 0 REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 470.89693 1409.66896 0.14615 6.8824E-05 -0.63642 -0.00029969 -0.49026 -0.00023086 470.896680264244 57.952 0.52975 61.243 61.065 61.595 3.2912 0.036584 -0.00015476 NaN 2.4348 59 36 2 NaN NaN NaN NaN 0 NaN NaN 0 123560 + 52370 31114 32708 32725 -0.019488338515884607 VVNYCIIFYNY 11 Unmodified _VVNYCIIFYNY_ 0 0 0 REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense REV__MER1A_dup1115|chr6:110699888-110700412:+|1.1735624954406574|0.0030557908992861|8.59|151.0|17|3|sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 470.89693 1409.66896 -0.11074 -5.2148E-05 -0.51906 -0.00024442 -0.6298 -0.00029657 470.8968255767168 58.03 0.20142 61.199 61.068 61.27 3.1681 -0.0077592 1.1024E-05 NaN 2.4348 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 114440 + 52371 31114 32708 32725 -0.019488338515884607 VVNYILIFV 9 Unmodified _VVNYILIFV_ 0 0 0 Cheshire_dup579|chr9:137633199-137633547:-|1.2896778372077298|0.0093998417324759|7.1|151.0|8|2|sense Cheshire_dup579|chr9:137633199-137633547:-|1.2896778372077298|0.0093998417324759|7.1|151.0|8|2|sense Cheshire_dup579|chr9:137633199-137633547:-|1.2896778372077298|0.0093998417324759|7.1|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 540.3294067382812 2 540.328611 1078.64267 NaN NaN NaN NaN NaN NaN NaN 95.319 1 95.319 94.819 95.819 0 0 0 0 0.39326 1 23137 23137 2.3027 0 1 52372 555 32709 32726 60255 60255 0.1064926503922834 VVNYVFFPY 9 Unmodified _VVNYVFFPY_ 0 0 0 REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|21|2|sense REV__LTR25-int_dup140|chr7:64508618-64510097:+|2.001999473140472|0.4635828143988258|2.11|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.79638671875 2 574.294768 1146.57498 0.47591 0.00027331 0.13177 7.5673E-05 0.60768 0.00034898 574.2948196063938 77.579 0.19695 81.19 81.153 81.35 3.6116 25 19 3 0 0 0 0.33654 1 18391 18391 11.64 11.64 1 94435 + 52373 30884 32710 32727 60256 60256 0.007558151084367637 VVPANRRLRQ 10 Unmodified _VVPANRRLRQ_ 0 0 0 AluSc8_dup20950|chr20:35737872-35738172:+|1.6384307074772972|0.1202359639645889|3.77|151.0|4|1|sense AluSc8_dup20950|chr20:35737872-35738172:+|1.6384307074772972|0.1202359639645889|3.77|151.0|4|1|sense AluSc8_dup20950|chr20:35737872-35738172:+|1.6384307074772972|0.1202359639645889|3.77|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 403.581298828125 3 403.582667 1207.72617 NaN NaN NaN NaN NaN NaN NaN 101.58 1 101.58 101.08 102.08 0 0 0 0 0.53105 1 24786 24786 0.15932 0.064481 1 52374 211 32711 32728 60257 60257 0.13061814259640414 VVPAPSSTSLY 11 Unmodified _VVPAPSSTSLY_ 0 0 0 REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|250|2|anti-sense REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|250|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 560.7974853515625 2 560.797872 1119.58119 -0.11853 -6.6471E-05 0.18358 0.00010295 0.065051 3.648E-05 560.7980816194848 12.579 0.233 16.029 15.904 16.137 3.45 48 31 2 0 0 0 0.67113 1 99 99 1.3295 0 1 73816 + 52375 29670 32712 32729 60258 60258 0.026182885492971764 VVPAPSSTSLY 11 Unmodified _VVPAPSSTSLY_ 0 0 0 REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|250|2|anti-sense REV__L1PA5_dup2277|chr3:154262606-154268724:+|1.6474920314867694|0.2748717005479943|2.58|151.0|250|2|anti-sense MSMS UPN48_class_I_Rep_1 5 560.795654296875 2 560.797872 1119.58119 NaN NaN NaN NaN NaN NaN NaN 28.47 1 32.027 31.527 32.527 3.5571 0 0 0 0.38417 1 3815 3815 2.9952 0.69251 1 + 52376 29670 32712 32729 60259 60259 0.026182885492971764 VVPARWWL 8 Unmodified _VVPARWWL_ 0 0 0 REV__AluSz6_dup20360|chr7:158802294-158802579:-|1.0108824799810712|0.0211366197532679|5.58|151.0|11|3|sense REV__AluSz6_dup20360|chr7:158802294-158802579:-|1.0108824799810712|0.0211366197532679|5.58|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 513.7333374023438 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 29.314 1 32.864 32.364 33.364 3.5499 0 0 0 0.40738 1 4055 4055 0.79363 0 1 + 52377 17225 32713 32730 60260 60260 0.06930378130596182 VVPARWWL 8 Unmodified _VVPARWWL_ 0 0 0 REV__AluSz6_dup20360|chr7:158802294-158802579:-|1.0108824799810712|0.0211366197532679|5.58|151.0|11|3|sense REV__AluSz6_dup20360|chr7:158802294-158802579:-|1.0108824799810712|0.0211366197532679|5.58|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 513.7977905273438 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 66.668 1 70.12 69.62 70.62 3.4516 0 0 0 0.40738 1 15263 15263 0.79363 0 1 + 52378 17225 32713 32730 60261 60261 0.06930378130596182 VVPEKERP 8 Unmodified _VVPEKERP_ 0 0 0 ENSG00000135953|ENST00000258436|MFSD9 ENSG00000135953|ENST00000258436|MFSD9 ENSG00000135953|ENST00000258436|MFSD9 MSMS UPN47_class_I_Rep_2 3 477.7601623535156 2 477.274367 952.53418 NaN NaN NaN NaN NaN NaN NaN 40.688 1 44.059 43.559 44.559 3.3712 0 0 0 0.40746 1 8127 8127 0.69038 0 1 52379 2940 32714 32731 60262 60262 0.05601473788806288 VVPELVML 8 Unmodified _VVPELVML_ 0 0 0 REV__ENST00000469133.1_1_7:24747667-24749942:-|nuORF REV__ENST00000469133.1_1_7:24747667-24749942:-|nuORF MSMS UPN48_class_I_Rep_1 5 450.2677307128906 2 450.267164 898.519776 NaN NaN NaN NaN NaN NaN NaN 76.593 1 80.103 79.603 80.603 3.5102 0 0 0 0.40604 1 18194 18194 2.5775 0 1 + 52380 22492 32715 32732 60263 60263 0.06645685316323124 VVPGLNGTAR 10 Unmodified _VVPGLNGTAR_ 0 0 0 nc|ENSG00000102539|O43193-2|MLNR;ENSG00000102539|ENST00000218721|MLNR nc|ENSG00000102539|O43193-2|MLNR nc|ENSG00000102539|O43193-2|MLNR MULTI-MSMS UPN46_class_I_Rep_3 1 492.2855529785156 2 492.285266 982.555979 0.30068 0.00014802 0.12359 6.0842E-05 0.42427 0.00020886 492.28524274105934 88.958 0.59859 88.958 88.635 89.234 0 121 64 3 0 0 0 0.54822 1 21404 21404 5.7319 5.7319 1 497550 52381 1618 32716 32733 60264 60264 0.06400278537375925 VVPGLYYP 8 Unmodified _VVPGLYYP_ 0 0 0 REV__nc|ENSG00000163026|Q9H6R7-3|WDCP REV__nc|ENSG00000163026|Q9H6R7-3|WDCP MSMS UPN47_class_I_Rep_2 3 454.248779296875 2 454.249829 906.485105 NaN NaN NaN NaN NaN NaN NaN 18.417 1 21.807 21.307 22.307 3.3898 0 0 0 0.40738 1 1552 1552 0.79363 0 1 + 52382 19957 32717 32734 60265 60265 0.028121854998516937 VVPHPEGP 8 Unmodified _VVPHPEGP_ 0 0 0 ENST00000344721.8_1_4:149002414-149002498:-|nuORF ENST00000344721.8_1_4:149002414-149002498:-|nuORF ENST00000344721.8_1_4:149002414-149002498:-|nuORF MSMS UPN46_class_I_Rep_3 1 416.2127685546875 2 416.221603 830.428653 NaN NaN NaN NaN NaN NaN NaN 44.6 1 44.6 44.1 45.1 0 0 0 0 0.40604 1 9000 9000 2.5775 0 1 52383 6257 32718 32735 60266 60266 0.006655576631942495 VVPINILL 8 Unmodified _VVPINILL_ 0 0 0 REV__HAL1_dup20656|chr17:62048874-62049351:+|1.1349441041042072|0.0167591052006088|6.08|150.0|27|2|anti-sense REV__HAL1_dup20656|chr17:62048874-62049351:+|1.1349441041042072|0.0167591052006088|6.08|150.0|27|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.29754638671875 2 440.796946 879.57934 -0.34561 -0.00015234 3.2893 0.0014499 2.9437 0.0012976 440.79951343678425 67.965 0.50095 71.163 70.859 71.36 3.1977 58 40 2 0 0 0 0.82752 1 16440 16440 0.79363 0 1 116180 + 52384 23399 32719 32736 60267 60267 0.1347332432201256 VVPIPVVQ 8 Unmodified _VVPIPVVQ_ 0 0 0 REV__ENSG00000103888|ENST00000394685|CEMIP REV__ENSG00000103888|ENST00000394685|CEMIP MSMS UPN46_class_I_Rep_3 1 425.77423095703125 2 425.773471 849.53239 NaN NaN NaN NaN NaN NaN NaN 63.497 1 63.497 62.997 63.997 0 0 0 0 0.40738 1 14260 14260 0.79363 0 1 + 52385 18242 32720 32737 60268 60268 0.10160464770854105 VVPIQVTI 8 Unmodified _VVPIQVTI_ 0 0 0 REV__ENSG00000153531|ENST00000612156|ADPRHL1 REV__ENSG00000153531|ENST00000612156|ADPRHL1 MSMS UPN48_class_I_Rep_3 7 434.77978515625 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 92.574 1 96.452 95.952 96.952 3.8782 0 0 0 0.40746 1 21946 21946 0.69038 0 1 + 52386 19713 32721 32738 60269 60269 0.10388447425293634 VVPLKLLV 8 Unmodified _VVPLKLLV_ 0 0 0 Tigger15a_dup1201|chr3:172176071-172176320:+|1.9146800718640355|0.011287638607938|7.41|151.0|11|3|sense Tigger15a_dup1201|chr3:172176071-172176320:+|1.9146800718640355|0.011287638607938|7.41|151.0|11|3|sense Tigger15a_dup1201|chr3:172176071-172176320:+|1.9146800718640355|0.011287638607938|7.41|151.0|11|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.8139953613281 2 440.815139 879.615725 0.16154 7.1211E-05 -2.1715 -0.00095723 -2.01 -0.00088602 440.8140974588795 108.81 0.15195 108.81 108.77 108.92 0 22 11 2 0 0 0 0.82752 1 26651 26651 0.79363 0 1 7157200 52387 33235 32722 32739 60270 60270 0.1711020121870206 VVPLLSLHVK 10 Unmodified _VVPLLSLHVK_ 0 0 0 ENSG00000135953|ENST00000258436|MFSD9 ENSG00000135953|ENST00000258436|MFSD9 ENSG00000135953|ENST00000258436|MFSD9 MULTI-MSMS UPN48_class_I_Rep_3 7 552.8606567382812 2 552.860609 1103.70667 0.27615 0.00015267 0.30674 0.00016958 0.58289 0.00032226 552.8606855861567 55.953 0.4765 59.509 59.144 59.621 3.5554 78 34 3 0 0 0 0.56309 1 11823 11823 1.6526 0 1 750270 52388 2940 32723 32740 60271 60271 0.1589604519617751 VVPLPVPI 8 Unmodified _VVPLPVPI_ 0 0 0 L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|47|2|anti-sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|47|2|anti-sense L1PA7_dup1146|chr2:65256949-65258060:-|1.575352943648848|0.1000675684609409|3.98|151.0|47|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 416.75628662109375 2 417.278389 832.542226 -0.38673 -0.00016137 -2.4089 -0.0010052 -2.7957 -0.0011666 417.27694103105034 109.39 0.11161 112.93 112.87 112.98 3.5307 22 13 3 0 0 0 0.72333 1 26632 26632 0 0 1 503850 52389 14728 32724 32741 60272 60272 0.11925652776221796 VVPMPRQH 8 Unmodified _VVPMPRQH_ 0 0 0 REV__L1MA2_dup5978|chr12:111908607-111910183:+|2.6216401936681724|0.1985912042095485|3.72|151.0|99|3|anti-sense REV__L1MA2_dup5978|chr12:111908607-111910183:+|2.6216401936681724|0.1985912042095485|3.72|151.0|99|3|anti-sense MSMS UPN48_class_I_Rep_2 6 482.2918395996094 2 482.263279 962.512005 NaN NaN NaN NaN NaN NaN NaN 33.346 1 37.006 36.506 37.506 3.6607 0 0 0 0.40738 1 5251 5251 0.79363 0 1 + 52390 24911 32725 32742 60273 60273 0.02924970839399066 VVPMRWRD 8 Unmodified _VVPMRWRD_ 0 0 0 REV__AluJo_dup48488|chr11:117068467-117068762:+|2.6979582830811406|0.0161488474028242|7.38|151.0|8|2|sense REV__AluJo_dup48488|chr11:117068467-117068762:+|2.6979582830811406|0.0161488474028242|7.38|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 529.7805786132812 2 529.781836 1057.54912 NaN NaN NaN NaN NaN NaN NaN 92.827 1 92.827 92.327 93.327 0 0 0 0 0.40738 1 22478 22478 0.79363 0 1 + 52391 17002 32726 32743 60274 60274 0.022646423851483632 VVPNDYVP 8 Unmodified _VVPNDYVP_ 0 0 0 nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 MSMS UPN47_class_I_Rep_1 2 451.7339782714844 2 451.734543 901.454533 NaN NaN NaN NaN NaN NaN NaN 94.921 1 98.671 98.171 99.171 3.7508 0 0 0 0.40738 1 23571 23571 0.79363 0 1 52392 3090 32727 32744 60275 60275 -0.0001359288519324764 VVPNDYVP 8 Unmodified _VVPNDYVP_ 0 0 0 nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 MULTI-MSMS UPN48_class_I_Rep_1 5 451.73419189453125 2 451.734543 901.454533 0.010677 4.8233E-06 -1.0179 -0.00045984 -1.0073 -0.00045501 451.7340897657134 94.927 0.15272 98.544 98.459 98.612 3.6167 25 18 2 0 0 0 0.82752 1 22830 22830 0.79363 0 1 72151 52393 3090 32727 32744 60276 60276 -0.0001359288519324764 VVPNLLGT 8 Unmodified _VVPNLLGT_ 0 0 0 MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_2 3 406.74871826171875 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 72.655 1 75.952 75.452 76.452 3.2971 0 0 0 0.40798 1 17822 17822 0 0 1 52394 15819 32728 32745 60277 60277 0.06707301357107553 VVPNLLGT 8 Unmodified _VVPNLLGT_ 0 0 0 MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_3 4 406.748779296875 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 70.228 1 73.439 72.939 73.939 3.2113 0 0 0 0.40798 1 17167 17167 0 0 1 52395 15819 32728 32745 60278 60278 0.06707301357107553 VVPNLLGT 8 Unmodified _VVPNLLGT_ 0 0 0 MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_3 4 406.7486877441406 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 72.68 1 75.907 75.407 76.407 3.2271 0 0 0 0.40798 1 17905 17905 0 0 1 52396 15819 32728 32745 60279 60279 0.06707301357107553 VVPNLLGT 8 Unmodified _VVPNLLGT_ 0 0 0 MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MER1B_dup4807|chr17:59742628-59743008:+|1.439697721066485|0.0048051069353181|8.23|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_1 5 406.74871826171875 2 406.747453 811.480354 NaN NaN NaN NaN NaN NaN NaN 72.947 1 76.42 75.92 76.92 3.4732 0 0 0 0.40798 1 17157 17157 0 0 1 52397 15819 32728 32745 60280 60280 0.06707301357107553 VVPNSNDFYN 10 Unmodified _VVPNSNDFYN_ 0 0 0 REV__L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|166|2|anti-sense REV__L1MA2_dup4119|chrX:74562660-74566096:+|1.1838314627664142|0.0296672772519388|5.32|151.0|166|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 585.2696533203125 2 584.767103 1167.51965 0.44864 0.00026235 -0.12316 -7.2022E-05 0.32548 0.00019033 584.7669426699753 70.351 0.9276 73.562 73.181 74.109 3.2113 195 80 3 0 0 0 0.56155 1 17116 17116 2.7352 2.7352 1 534000 + 52398 24866 32729 32746 60281 60281 -0.057406431499885 VVPPFLQPE 9 Unmodified _VVPPFLQPE_ 0 0 0 CON__P02666 CON__P02666 CON__P02666 MSMS UPN48_class_I_Rep_1 5 513.287109375 2 513.286943 1024.55933 NaN NaN NaN NaN NaN NaN NaN 69.009 1 72.464 71.964 72.964 3.4548 0 0 0 0.32573 1 15976 15976 9.3831 2.66 1 + 52399 633 32730 32747 60282 60282 0.04803528591378381 VVPPFLQPE 9 Unmodified _VVPPFLQPE_ 0 0 0 CON__P02666 CON__P02666 CON__P02666 MSMS UPN48_class_I_Rep_2 6 513.2865600585938 2 513.286943 1024.55933 NaN NaN NaN NaN NaN NaN NaN 68.939 1 72.455 71.955 72.955 3.5158 0 0 0 0.32573 1 15935 15935 9.3831 1.473 1 + 52400 633 32730 32747 60283 60283 0.04803528591378381 VVPPPTIP 8 Unmodified _VVPPPTIP_ 0 0 0 ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8 ENSG00000213079|ENST00000367178|SCAF8 ENSG00000213079|ENST00000367178|SCAF8 MSMS UPN47_class_I_Rep_1 2 410.25372314453125 2 410.252372 818.49019 NaN NaN NaN NaN NaN NaN NaN 86.274 1 89.89 89.39 90.39 3.6153 0 0 0 0.40738 1 21549 21549 0.79363 0 1 52401 5581 32731 32748 60284 60284 0.07368489362477249 VVPRILGQ 8 Unmodified _VVPRILGQ_ 0 0 0 HUERS-P3-int_dup469|chr11:34898116-34898773:+|1.0742345645371685|0.2349634200403038|2.19|151.0|20|1|anti-sense HUERS-P3-int_dup469|chr11:34898116-34898773:+|1.0742345645371685|0.2349634200403038|2.19|151.0|20|1|anti-sense HUERS-P3-int_dup469|chr11:34898116-34898773:+|1.0742345645371685|0.2349634200403038|2.19|151.0|20|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.7991943359375 2 441.281995 880.549437 -0.29822 -0.0001316 1.8981 0.00083758 1.5999 0.00070599 441.2821477121929 63.206 0.0532 66.462 66.443 66.496 3.2558 5 4 2 0 0 0 0.72333 1 14987 14987 0 0 1 39308 52402 8444 32732 32749 60285 60285 0.10438385376676251 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 476.3267822265625 2 476.326737 950.63892 0.25658 0.00012221 0.0084929 4.0454E-06 0.26507 0.00012626 476.32667230239247 109.47 0.23222 109.47 109.38 109.62 0 37 18 3 0 0 0 0.82752 1 26917 26917 0 0 1 2877700 52403 7331 32733 32750 60286 60286 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 476.3269348144531 2 476.326737 950.63892 0.23747 0.00011311 0.45301 0.00021578 0.69048 0.00032889 476.3269390222514 108.02 0.040176 111.66 111.63 111.67 3.6355 6 2 3 0 0 0 0.82752 1 26505 26505 0 0 1 1573900 52404 7331 32733 32750 60287 60287 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 476.3268127441406 2 476.326737 950.63892 0.23757 0.00011316 0.023877 1.1373E-05 0.26144 0.00012453 476.3265812231735 108.31 0.89658 111.95 111.68 112.58 3.6355 199 89 4 0 0 0 0.82752 2 26585 26585;26631 0 0 1 13800000 52405 7331 32733 32750 60288;60289 60288 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 476.3277282714844 2 476.326737 950.63892 0.32245 0.00015359 0.43117 0.00020538 0.75362 0.00035897 476.32694324877696 108.08 0.31689 111.62 111.31 111.63 3.5333 64 37 2 0 0 0 0.82752 2 26131 26131;26152 0.69038 0 1 11127000 52406 7331 32733 32750 60290;60291 60290 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 476.3266906738281 2 476.326737 950.63892 0.322 0.00015338 0.7071 0.00033681 1.0291 0.00049019 476.32697158596716 109.96 0.13515 113.49 113.46 113.6 3.5307 26 18 2 0 0 0 0.82752 1 26789 26789 0 0 1 320320 52407 7331 32733 32750 60292 60292 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 476.326904296875 2 476.326737 950.63892 0.1045 4.9775E-05 0.06707 3.1947E-05 0.17157 8.1722E-05 476.32663934703965 108.35 0.78142 111.89 111.86 112.64 3.5382 153 86 2 0 0 0 0.82752 1 26555 26555 0 0 1 21918000 52408 7331 32733 32750 60293 60293 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 476.3268127441406 2 476.326737 950.63892 0.10158 4.8383E-05 0.64252 0.00030605 0.7441 0.00035443 476.326928004595 108.26 0.49944 111.89 111.62 112.12 3.6313 67 42 3 0 0 0 0.82752 1 26175 26175 0 0 1 8517600 52409 7331 32733 32750 60294 60294 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 476.3273010253906 2 476.326737 950.63892 0.10117 4.8191E-05 0.93452 0.00044514 1.0357 0.00049333 476.32723476745696 109.48 0.19526 113.12 113 113.2 3.6321 47 24 2 0 0 0 0.82752 1 26583 26583 0 0 1 644850 52410 7331 32733 32750 60295 60295 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 476.32684326171875 2 476.326737 950.63892 0.22398 0.00010669 0.46275 0.00022042 0.68673 0.00032711 476.32688444832246 108.03 0.11688 111.7 111.59 111.71 3.6746 27 10 3 0 0 0 0.82752 1 25554 25554 0 0 1 7152100 52411 7331 32733 32750 60296 60296 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 476.3269348144531 2 476.326737 950.63892 0.22417 0.00010678 0.22807 0.00010864 0.45224 0.00021541 476.3266962829372 108.31 0.54762 111.98 111.72 112.27 3.6746 213 61 4 0 0 0 0.82752 2 25632 25632;25728 0 0 1 47872000 52412 7331 32733 32750 60297;60298 60297 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 476.3268737792969 2 476.326737 950.63892 0.22376 0.00010658 0.62912 0.00029967 0.85287 0.00040625 476.32705161700227 109.54 0.83134 113.21 113.01 113.84 3.6715 179 110 2 0 0 0 0.82752 4 26093 26093;26125;26155;26185 0 0 1 1162500 52413 7331 32733 32750 60299;60300;60301;60302 60299 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MSMS UPN48_class_I_Rep_2 6 476.3267517089844 2 476.326737 950.63892 NaN NaN NaN NaN NaN NaN NaN 110.5 1 114.17 113.67 114.67 3.669 0 0 0 0.40798 1 26289 26289 0 0 1 52414 7331 32733 32750 60303 60303 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 476.3268127441406 2 476.326737 950.63892 0.21482 0.00010233 0.32946 0.00015693 0.54428 0.00025925 476.32676865288323 108.25 0.48877 111.94 111.67 112.15 3.6813 139 48 4 0 0 0 0.82752 1 25608 25608 0 0 1 49474000 52415 7331 32733 32750 60304 60304 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 476.326904296875 2 476.326737 950.63892 0.21439 0.00010212 0.26157 0.00012459 0.47595 0.00022671 476.3267865529335 110.2 0.20154 113.87 113.81 114.02 3.67 41 27 2 0 0 0 0.82752 2 26156 26156;26182 0 0 1 177130 52416 7331 32733 32750 60305;60306 60305 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 476.326737 950.63892 0.23733 0.00011305 1.3784 0.00065656 1.6157 0.00076961 476.32744057201796 109.55 0.72024 113.15 112.94 113.66 3.6046 -0.04108 0.00011127 NaN 0 154 95 2 NaN NaN NaN NaN 0 NaN NaN 0 788430 52417 7331 32733 32750 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 476.326737 950.63892 0.10564 5.0318E-05 0.65894 0.00031387 0.76457 0.00036419 476.32692267513033 108.21 0.32169 111.75 111.55 111.87 3.5382 0.014232 0.0002188 NaN 0 81 34 4 NaN NaN NaN NaN 0 NaN NaN 0 33102000 52418 7331 32733 32750 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 476.326737 950.63892 0.10459 4.9818E-05 1.3865 0.00066041 1.4911 0.00071023 476.3273878135696 109.48 0.62062 113.02 112.99 113.61 3.5347 -0.17474 0.00011896 NaN 0 127 88 2 NaN NaN NaN NaN 0 NaN NaN 0 884300 52419 7331 32733 32750 0.1616264005605217 VVPRRVLL 8 Unmodified _VVPRRVLL_ 0 0 0 ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 476.326737 950.63892 0.22361 0.00010651 -0.11137 -5.305E-05 0.11224 5.3464E-05 476.3265953351256 110.32 0.055717 113.99 113.95 114 3.669 0.062317 -0.0002908 NaN 0 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 108180 52420 7331 32733 32750 0.1616264005605217 VVPSRWWM 8 Unmodified _VVPSRWWM_ 0 0 0 REV__AluJo_dup54081|chr13:57165786-57166096:+|1.0495541231696246|0.0001284221296633|13.0|123.0|1|1|sense REV__AluJo_dup54081|chr13:57165786-57166096:+|1.0495541231696246|0.0001284221296633|13.0|123.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 530.774658203125 2 530.77348 1059.53241 NaN NaN NaN NaN NaN NaN NaN 18.642 1 18.642 18.142 19.142 0 0 0 0 0.40738 1 1659 1659 0.79363 0 1 + 52421 17009 32734 32751 60307 60307 0.0050214149919156625 VVPVFLHFR 9 Unmodified _VVPVFLHFR_ 0 0 0 L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|75|1|anti-sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|75|1|anti-sense L1ME5_dup1127|chr5:143017430-143019035:-|1.4915878681700745|0.042924293164985|5.12|151.0|75|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.7953491210938 2 557.332019 1112.64948 NaN NaN NaN NaN NaN NaN NaN 30.663 1 30.663 30.163 31.163 0 0 0 0 0.40038 1 5025 5025 0.6015 0 1 52422 12962 32735 32752 60308 60308 0.0976662271045825 VVPVIILLIL 10 Unmodified _VVPVIILLIL_ 0 0 0 REV__L1M5_dup19542|chr6:34303272-34303685:-|1.4346169547562082|0.0338943611935019|5.4|151.0|31|3|anti-sense REV__L1M5_dup19542|chr6:34303272-34303685:-|1.4346169547562082|0.0338943611935019|5.4|151.0|31|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 546.5932006835938 2 546.393754 1090.77295 0.30056 0.00016423 0.18985 0.00010373 0.49041 0.00026796 546.8951114949883 57.119 0.042709 57.119 57.096 57.139 0 6 4 2 0 0 0 0.84575 1 12497 12497 0 0 1 171600 + 52423 24629 32736 32753 60309 60309 0.23119861038253475 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79937744140625 2 440.796946 879.57934 0.081973 3.6134E-05 3.1415 0.0013848 3.2235 0.0014209 440.79924799005835 55.014 0.048889 55.014 54.988 55.037 0 6 4 2 0 0 0 0.82752 1 11945 11945 0 0 1 66085 + 52424 29491 32737 32754 60310 60310 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7992858886719 2 440.796946 879.57934 0.094111 4.1484E-05 4.2898 0.0018909 4.3839 0.0019324 440.7993615062094 63.326 0.16982 63.326 63.277 63.447 0 30 19 2 0 0 0 0.82752 1 14220 14220 0 0 1 136640 + 52425 29491 32737 32754 60311 60311 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79937744140625 2 440.796946 879.57934 0.10471 4.6158E-05 3.422 0.0015084 3.5267 0.0015546 440.79949616479695 66.8 0.14664 66.8 66.751 66.898 0 25 17 2 0 0 0 0.82752 1 15201 15201 0 0 1 79881 + 52426 29491 32737 32754 60312 60312 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79864501953125 2 440.796946 879.57934 0.12043 5.3085E-05 3.3143 0.0014609 3.4347 0.001514 440.7993837521296 72.068 0.43129 72.068 71.822 72.253 0 65 39 2 0 0 0 0.82752 3 16589 16589;16630;16669 0 0 1 235590 + 52427 29491 32737 32754 60313;60314;60315 60313 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.799072265625 2 440.796946 879.57934 0.12145 5.3537E-05 3.2574 0.0014359 3.3789 0.0014894 440.7993101170625 72.339 0.28418 72.339 72.253 72.537 0 45 30 2 0 0 0 0.82752 2 16708 16708;16762 0 0 1 96924 + 52428 29491 32737 32754 60316;60317 60316 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.29736328125 2 440.796946 879.57934 0.12443 5.4847E-05 3.3926 0.0014954 3.517 0.0015503 440.79926410201364 73.417 0.32463 73.417 73.238 73.563 0 48 36 2 0 0 0 0.82752 2 16977 16977;17011 0 0 1 194120 + 52429 29491 32737 32754 60318;60319 60318 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79949951171875 2 440.796946 879.57934 0.13068 5.7602E-05 2.0221 0.00089136 2.1528 0.00094896 440.7993933399816 75.389 0.30527 75.389 75.183 75.488 0 41 26 2 0 0 0 0.82752 1 17524 17524 0 0 1 110870 + 52430 29491 32737 32754 60320 60320 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7995300292969 2 440.796946 879.57934 0.13141 5.7923E-05 3.2731 0.0014428 3.4045 0.0015007 440.7993789773842 75.703 0.45361 75.703 75.473 75.927 0 72 46 2 0 0 0 0.82752 2 17609 17609;17628 0 0 1 142300 + 52431 29491 32737 32754 60321;60322 60321 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2974548339844 2 440.796946 879.57934 0.14417 6.3549E-05 3.1432 0.0013855 3.2874 0.0014491 440.7992856829325 79.909 0.26105 79.909 79.778 80.039 0 36 24 2 0 0 0 0.82752 1 18806 18806 0 0 1 122820 + 52432 29491 32737 32754 60323 60323 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79937744140625 2 440.796946 879.57934 0.14599 6.4351E-05 2.4527 0.0010811 2.5987 0.0011455 440.79933758377575 80.541 0.3045 80.541 80.329 80.633 0 57 32 2 0 0 0 0.82752 1 18967 18967 0 0 1 97713 + 52433 29491 32737 32754 60324 60324 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2972106933594 2 440.796946 879.57934 0.14846 6.5442E-05 2.0941 0.00092309 2.2426 0.00098854 440.7993192863418 81.29 0.10876 81.29 81.238 81.346 0 19 13 2 0 0 0 0.82752 1 19193 19193 0 0 1 113980 + 52434 29491 32737 32754 60325 60325 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7996520996094 2 440.796946 879.57934 0.14963 6.5955E-05 1.9671 0.00086711 2.1168 0.00093307 440.79941622440015 81.683 0.50628 81.683 81.432 81.938 0 78 50 2 0 0 0 0.82752 1 19276 19276 0 0 1 128310 + 52435 29491 32737 32754 60326 60326 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79949951171875 2 440.796946 879.57934 0.15269 6.7305E-05 1.8606 0.00082014 2.0133 0.00088745 440.7992609426183 82.675 0.43796 82.675 82.484 82.922 0 64 42 2 0 0 0 0.82752 2 19552 19552;19597 0 0 1 153610 + 52436 29491 32737 32754 60327;60328 60327 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7993469238281 2 440.796946 879.57934 0.16164 7.125E-05 2.1115 0.00093074 2.2731 0.001002 440.79931171849546 85.97 0.44569 85.97 85.829 86.275 0 63 44 2 0 0 0 0.82752 2 20529 20529;20564 0 0 1 142890 + 52437 29491 32737 32754 60329;60330 60329 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7992858886719 2 440.796946 879.57934 0.16163 7.1247E-05 2.1874 0.0009642 2.349 0.0010354 440.79927487183323 86.32 0.12016 86.32 86.258 86.378 0 21 14 2 0 0 0 0.82752 1 20645 20645 0 0 1 113790 + 52438 29491 32737 32754 60331 60331 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.799560546875 2 440.796946 879.57934 0.16156 7.1215E-05 2.6125 0.0011516 2.774 0.0012228 440.7993820405865 89.065 0.45479 89.065 88.701 89.156 0 71 48 2 0 0 0 0.82752 2 21327 21327;21363 0 0 1 228590 + 52439 29491 32737 32754 60332;60333 60332 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79949951171875 2 440.796946 879.57934 0.16143 7.1156E-05 3.1174 0.0013742 3.2789 0.0014453 440.79930100662733 90.37 0.27563 90.37 90.121 90.396 0 31 23 2 0 0 0 0.82752 2 21726 21726;21770 0 0 1 190880 + 52440 29491 32737 32754 60334;60335 60334 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7992248535156 2 440.796946 879.57934 0.16169 7.1273E-05 1.7872 0.00078777 1.9488 0.00085905 440.7992936750818 91.414 0.21704 91.414 91.297 91.514 0 27 18 2 0 0 0 0.82752 1 22074 22074 0 0 1 103400 + 52441 29491 32737 32754 60336 60336 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7991027832031 2 440.796946 879.57934 0.16143 7.116E-05 3.2863 0.0014486 3.4478 0.0015198 440.7993596505774 92.592 0.48956 92.592 92.219 92.708 0 76 51 2 0 0 0 0.82752 3 22360 22360;22397;22407 0 0 1 214200 + 52442 29491 32737 32754 60337;60338;60339 60337 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2975158691406 2 440.796946 879.57934 0.16164 7.1252E-05 2.4008 0.0010583 2.5625 0.0011295 440.7994984003916 94.412 0.31727 94.412 94.209 94.527 0 56 39 2 0 0 0 0.82752 1 22905 22905 0 0 1 84147 + 52443 29491 32737 32754 60340 60340 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7992858886719 2 440.796946 879.57934 0.16159 7.1227E-05 2.4039 0.0010596 2.5654 0.0011308 440.7993455260009 97.292 0.37493 97.292 97.15 97.525 0 57 40 2 0 0 0 0.82752 2 23667 23667;23674 0 0 1 189650 + 52444 29491 32737 32754 60341;60342 60341 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79974365234375 2 440.796946 879.57934 0.16158 7.1223E-05 2.4307 0.0010714 2.5923 0.0011427 440.7993170609223 98.449 0.30679 98.449 98.299 98.605 0 51 37 2 0 0 0 0.82752 3 23947 23947;23962;23995 0 0 1 178280 + 52445 29491 32737 32754 60343;60344;60345 60343 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.79925537109375 2 440.796946 879.57934 0.16162 7.1241E-05 2.2623 0.00099719 2.4239 0.0010684 440.7993287753285 102.01 0.2501 102.01 101.87 102.12 0 57 32 2 0 0 0 0.82752 2 24880 24880;24909 0 0 1 102000 + 52446 29491 32737 32754 60346;60347 60346 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2972717285156 2 440.796946 879.57934 0.1616 7.1233E-05 2.3138 0.0010199 2.4754 0.0010911 440.7993272057147 102.21 0.2738 102.21 102.1 102.37 0 48 35 2 0 0 0 0.82752 1 24939 24939 0 0 1 134090 + 52447 29491 32737 32754 60348 60348 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2978820800781 2 440.796946 879.57934 0.16157 7.1221E-05 2.5625 0.0011296 2.7241 0.0012008 440.7992979352971 105.13 0.12612 105.13 105.07 105.2 0 26 16 2 0 0 0 0.82752 1 25648 25648 0 0 1 104490 + 52448 29491 32737 32754 60349 60349 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7994079589844 2 440.796946 879.57934 0.16201 7.1414E-05 2.8245 0.001245 2.9865 0.0013164 440.7994035159584 110.73 0.16962 110.73 110.67 110.84 0 41 18 4 0 0 0 0.82752 1 27280 27280 0 0 1 183980 + 52449 29491 32737 32754 60350 60350 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7998046875 2 440.796946 879.57934 0.16136 7.1126E-05 3.6029 0.0015881 3.7642 0.0016593 440.7993279207158 111.22 0.33437 111.22 111.03 111.36 0 47 29 2 0 0 0 0.82752 1 27420 27420 0 0 1 115550 + 52450 29491 32737 32754 60351 60351 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7992248535156 2 440.796946 879.57934 0.16148 7.1179E-05 2.922 0.001288 3.0835 0.0013592 440.79925313179325 113.13 0.17287 113.13 113.04 113.21 0 28 19 2 0 0 0 0.82752 1 27947 27947 0 0 1 82747 + 52451 29491 32737 32754 60352 60352 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.7994079589844 2 440.796946 879.57934 0.11959 5.2717E-05 2.9112 0.0012832 3.0307 0.0013359 440.79941047003757 71.748 0.20129 71.748 71.648 71.85 0 26 17 2 0 0 0 0.72333 1 16546 16546 0 0 1 213970 + 52452 29491 32737 32754 60353 60353 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 441.29754638671875 2 440.796946 879.57934 0.14156 6.2399E-05 2.2149 0.0009763 2.3564 0.0010387 440.7995252619422 78.993 0.12006 78.993 78.903 79.024 0 18 11 2 0 0 0 0.72333 1 18509 18509 0 0 1 87566 + 52453 29491 32737 32754 60354 60354 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 440.79937744140625 2 440.796946 879.57934 0.16141 7.1151E-05 3.3589 0.0014806 3.5203 0.0015517 440.7993297844825 110.94 0.18739 110.94 110.84 111.03 0 33 21 2 0 0 0 0.72333 1 27315 27315 0 0 1 124250 + 52454 29491 32737 32754 60355 60355 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79962158203125 2 440.796946 879.57934 -0.43613 -0.00019225 2.6546 0.0011701 2.2185 0.00097789 440.7997095377036 21.744 0.60168 25.419 25.059 25.661 3.6749 102 62 2 0 0 0 0.82752 1 2361 2361 0 0 1 74541 + 52455 29491 32737 32754 60356 60356 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.2978210449219 2 440.796946 879.57934 -0.43272 -0.00019074 2.5771 0.001136 2.1444 0.00094523 440.79968986568315 22.895 1.3296 26.599 25.664 26.994 3.7042 175 123 2 0 0 0 0.82752 6 2574 2574;2584;2625;2663;2739;2843 0 0 1 83130 + 52456 29491 32737 32754 60357;60358;60359;60360;60361;60362 60357 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29754638671875 2 440.796946 879.57934 -0.42874 -0.00018899 2.9001 0.0012783 2.4713 0.0010893 440.7997198785305 23.616 1.3254 27.346 27.02 28.345 3.7298 152 111 2 0 0 0 0.82752 1 3162 3162 0 0 1 91524 + 52457 29491 32737 32754 60363 60363 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.2975158691406 2 440.796946 879.57934 -0.42008 -0.00018517 3.2876 0.0014492 2.8675 0.001264 440.7996579370483 26.054 1.1195 29.816 29.496 30.616 3.7624 139 100 2 0 0 0 0.82752 2 3791 3791;3862 0 0 1 99387 + 52458 29491 32737 32754 60364;60365 60364 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79937744140625 2 440.796946 879.57934 -0.41212 -0.00018166 3.5648 0.0015713 3.1526 0.0013897 440.79959863844033 28.147 0.63185 31.913 31.679 32.31 3.7662 79 49 2 0 0 0 0.82752 1 4282 4282 0 0 1 114620 + 52459 29491 32737 32754 60366 60366 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7991638183594 2 440.796946 879.57934 -0.40999 -0.00018072 3.1244 0.0013772 2.7145 0.0011965 440.7996653401663 28.749 0.48981 32.515 32.31 32.8 3.7662 65 41 2 0 0 0 0.82752 2 4452 4452;4497 0 0 1 93150 + 52460 29491 32737 32754 60367;60368 60367 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7996826171875 2 440.796946 879.57934 -0.40861 -0.00018011 3.3043 0.0014565 2.8956 0.0012764 440.79977011182075 29.122 0.62955 32.88 32.726 33.356 3.7578 70 50 2 0 0 0 0.82752 1 4570 4570 0 0 1 92088 + 52461 29491 32737 32754 60369 60369 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.799560546875 2 440.796946 879.57934 -0.40624 -0.00017907 3.1419 0.0013849 2.7357 0.0012059 440.79963490272775 29.709 1.1249 33.467 33.021 34.146 3.7578 119 81 2 0 0 0 0.82752 4 4652 4652;4776;4816;4899 0 0 1 103230 + 52462 29491 32737 32754 60370;60371;60372;60373 60370 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7995300292969 2 440.796946 879.57934 -0.40205 -0.00017722 2.5543 0.0011259 2.1523 0.00094871 440.7995227526891 31.101 1.2195 34.83 34.117 35.337 3.7293 145 98 2 0 0 0 0.82752 4 4982 4982;5020;5057;5085 0 0 1 87089 + 52463 29491 32737 32754 60374;60375;60376;60377 60374 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79931640625 2 440.796946 879.57934 -0.39255 -0.00017304 3.4787 0.0015334 3.0861 0.0013604 440.79954704253936 33.376 0.92241 37.074 36.639 37.562 3.6983 88 61 2 0 0 0 0.82752 1 5947 5947 0 0 1 112320 + 52464 29491 32737 32754 60378 60378 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.29736328125 2 440.796946 879.57934 -0.39067 -0.00017221 2.851 0.0012567 2.4603 0.0010845 440.7992832091479 34.117 0.45577 37.803 37.507 37.963 3.6859 55 33 2 0 0 0 0.82752 1 6034 6034 0 0 1 134620 + 52465 29491 32737 32754 60379 60379 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.799072265625 2 440.796946 879.57934 -0.38851 -0.00017125 1.933 0.00085208 1.5445 0.00068083 440.79921332486566 34.748 0.68932 38.434 37.841 38.531 3.6859 71 53 2 0 0 0 0.82752 1 6275 6275 0 0 1 76087 + 52466 29491 32737 32754 60380 60380 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.2974853515625 2 440.796946 879.57934 -0.026229 -1.1562E-05 2.7143 0.0011964 2.688 0.0011849 440.7994104741919 53.081 1.8161 56.609 55.979 57.795 3.5278 156 109 2 0 0 0 0.82752 6 11767 11767;11918;11959;11998;12039;12082 0 0 1 102820 + 52467 29491 32737 32754 60381;60382;60383;60384;60385;60386 60381 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7998046875 2 440.796946 879.57934 -0.0066886 -2.9483E-06 3.527 0.0015547 3.5203 0.0015517 440.7994264484135 54.661 1.2149 58.162 57.791 59.006 3.5014 100 70 2 0 0 0 0.82752 1 12297 12297 0 0 1 159660 + 52468 29491 32737 32754 60387 60387 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7994384765625 2 440.796946 879.57934 0.014323 6.3135E-06 2.4379 0.0010746 2.4522 0.0010809 440.7994046431281 56.011 1.0547 59.489 58.983 60.038 3.4785 94 60 2 0 0 0 0.82752 2 12726 12726;12834 0 0 1 82023 + 52469 29491 32737 32754 60388;60389 60388 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 440.79931640625 2 440.796946 879.57934 -0.42224 -0.00018612 3.1471 0.0013872 2.7249 0.0012011 440.79969812947155 25.584 0.70339 29.334 28.817 29.52 3.7495 96 63 2 0 0 0 0.72333 1 3415 3415 0 0 1 86210 + 52470 29491 32737 32754 60390 60390 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.2976379394531 2 440.796946 879.57934 -0.67929 -0.00029943 3.1116 0.0013716 2.4324 0.0010722 440.7998777409975 23.364 0.82389 26.809 26.625 27.448 3.4447 98 72 2 0 0 0 0.82752 2 2935 2935;2999 0 0 1 86985 + 52471 29491 32737 32754 60391;60392 60391 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7994079589844 2 440.796946 879.57934 -0.68007 -0.00029977 3.2317 0.0014245 2.5516 0.0011247 440.7997168134551 27.322 0.65643 30.82 30.587 31.243 3.4986 86 51 2 0 0 0 0.82752 4 4072 4072;4109;4155;4192 0 0 1 99964 + 52472 29491 32737 32754 60393;60394;60395;60396 60393 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.799560546875 2 440.796946 879.57934 -0.67985 -0.00029968 2.7125 0.0011957 2.0326 0.00089598 440.799794458187 29.581 0.64874 33.074 32.651 33.3 3.4923 75 53 2 0 0 0 0.82752 2 4752 4752;4791 0 0 1 68201 + 52473 29491 32737 32754 60397;60398 60397 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.297607421875 2 440.796946 879.57934 -0.68028 -0.00029986 3.0418 0.0013408 2.3615 0.001041 440.7997173911534 30.038 0.9245 33.52 33.22 34.144 3.4821 114 74 2 0 0 0 0.82752 4 4909 4909;4964;5010;5050 0 0 1 87272 + 52474 29491 32737 32754 60399;60400;60401;60402 60399 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.2970275878906 2 440.796946 879.57934 -0.68025 -0.00029985 2.7416 0.0012085 2.0613 0.00090863 440.79970076138954 30.994 0.59094 34.476 34.144 34.735 3.4821 76 48 2 0 0 0 0.82752 2 5101 5101;5171 0 0 1 91384 + 52475 29491 32737 32754 60403;60404 60403 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.2975158691406 2 440.796946 879.57934 -0.68126 -0.0003003 2.8953 0.0012762 2.2141 0.00097595 440.799409752735 34.501 0.80898 37.926 37.328 38.137 3.4253 100 55 2 0 0 0 0.82752 2 6145 6145;6271 0 0 1 82889 + 52476 29491 32737 32754 60405;60406 60405 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7995300292969 2 440.796946 879.57934 -0.68156 -0.00030043 3.3443 0.0014742 2.6628 0.0011737 440.7996893349149 37.719 0.56374 41.107 40.805 41.369 3.3879 72 43 2 0 0 0 0.82752 1 7198 7198 0 0 1 92678 + 52477 29491 32737 32754 60407 60407 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.79901123046875 2 440.796946 879.57934 -0.41953 -0.00018493 2.3942 0.0010553 1.9746 0.00087041 440.79949028206283 47.353 0.73021 50.702 50.188 50.918 3.3492 88 48 2 0 0 0 0.82752 1 10038 10038 0 0 1 109780 + 52478 29491 32737 32754 60408 60408 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7990417480469 2 440.796946 879.57934 -0.37429 -0.00016499 1.9721 0.0008693 1.5978 0.00070431 440.79946051216837 48.003 0.8544 51.353 51.181 52.036 3.3492 89 48 2 0 0 0 0.82752 4 10296 10296;10345;10392;10448 0 0 1 83666 + 52479 29491 32737 32754 60409;60410;60411;60412 60409 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.297607421875 2 440.796946 879.57934 -0.30342 -0.00013375 3.1028 0.0013677 2.7994 0.001234 440.79961294515476 49.638 0.87782 52.981 52.722 53.599 3.3431 78 51 2 0 0 0 0.82752 1 10832 10832 0 0 1 134860 + 52480 29491 32737 32754 60413 60413 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.29736328125 2 440.796946 879.57934 -0.27202 -0.0001199 2.6844 0.0011833 2.4124 0.0010634 440.7996379096424 50.322 0.86489 53.666 53.27 54.135 3.3431 63 43 2 0 0 0 0.82752 2 11137 11137;11183 0 0 1 102650 + 52481 29491 32737 32754 60414;60415 60414 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7996826171875 2 440.796946 879.57934 -0.35597 -0.00015691 3.0239 0.0013329 2.6679 0.001176 440.799558272501 66.182 0.59599 69.441 69.096 69.692 3.2588 62 34 2 0 0 0 0.82752 2 15820 15820;15868 0 0 1 121500 + 52482 29491 32737 32754 60416;60417 60416 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7994384765625 2 440.796946 879.57934 -0.35175 -0.00015505 3.611 0.0015917 3.2592 0.0014367 440.7996032640604 66.67 0.47388 69.929 69.692 70.166 3.2588 50 34 2 0 0 0 0.82752 2 16013 16013;16101 0 0 1 141130 + 52483 29491 32737 32754 60418;60419 60418 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.29718017578125 2 440.796946 879.57934 -0.34117 -0.00015038 2.3277 0.001026 1.9865 0.00087566 440.79959999191834 67.644 0.49318 70.907 70.597 71.09 3.2636 62 41 2 0 0 0 0.82752 1 16319 16319 0 0 1 101810 + 52484 29491 32737 32754 60420 60420 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.2974548339844 2 440.796946 879.57934 -0.3345 -0.00014745 2.7918 0.0012306 2.4573 0.0010832 440.79947529374124 68.427 0.62878 71.697 71.375 72.004 3.2696 75 55 2 0 0 0 0.82752 3 16489 16489;16516;16576 0 0 1 118790 + 52485 29491 32737 32754 60421;60422;60423 60421 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 440.7994384765625 2 440.796946 879.57934 -0.68068 -0.00030004 3.0423 0.001341 2.3616 0.001041 440.7996822761283 33.331 0.84571 36.771 36.627 37.473 3.4398 86 56 2 0 0 0 0.72333 1 6090 6090 0 0 1 88332 + 52486 29491 32737 32754 60424 60424 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79901123046875 2 440.796946 879.57934 -1.0757 -0.00047417 3.3494 0.0014764 2.2737 0.0010022 440.7999292588674 23.198 0.87417 26.548 25.945 26.82 3.3503 104 71 2 0 0 0 0.82752 2 2924 2924;2938 0 0 1 66440 + 52487 29491 32737 32754 60425;60426 60425 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7995910644531 2 440.796946 879.57934 -0.97551 -0.00043 3.7317 0.0016449 2.7562 0.0012149 440.7999332147333 29.739 0.51659 33.062 32.765 33.281 3.3235 73 44 2 0 0 0 0.82752 2 4835 4835;4906 0 0 1 105580 + 52488 29491 32737 32754 60427;60428 60427 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7991027832031 2 440.796946 879.57934 -0.96869 -0.000427 3.0122 0.0013278 2.0435 0.00090078 440.7999044698283 30.28 0.58569 33.591 33.238 33.824 3.3116 75 47 2 0 0 0 0.82752 3 4946 4946;4984;5027 0 0 1 67919 + 52489 29491 32737 32754 60429;60430;60431 60429 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7991027832031 2 440.796946 879.57934 -0.76947 -0.00033918 2.9945 0.0013199 2.225 0.00098077 440.79945663448603 41.079 0.41929 44.316 44.151 44.57 3.2372 52 34 2 0 0 0 0.82752 2 8321 8321;8359 0 0 1 76101 + 52490 29491 32737 32754 60432;60433 60432 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79962158203125 2 440.796946 879.57934 -0.59016 -0.00026014 3.2077 0.001414 2.6176 0.0011538 440.79960928474264 44.637 1.5168 47.882 47.076 48.593 3.2441 138 93 2 0 0 0 0.82752 5 9277 9277;9327;9375;9421;9463 0 0 1 103350 + 52491 29491 32737 32754 60434;60435;60436;60437;60438 60434 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.2972106933594 2 440.796946 879.57934 -0.51917 -0.00022885 4.2147 0.0018578 3.6956 0.001629 440.79961554249644 46.166 0.97872 49.41 48.593 49.572 3.2441 98 58 2 0 0 0 0.82752 4 9639 9639;9724;9766;9856 0 0 1 208100 + 52492 29491 32737 32754 60439;60440;60441;60442 60439 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79974365234375 2 440.796946 879.57934 -0.44452 -0.00019594 3.5635 0.0015708 3.119 0.0013748 440.7994841531643 47.256 0.4657 50.5 50.358 50.823 3.2439 50 30 2 0 0 0 0.82752 1 10166 10166 0 0 1 136960 + 52493 29491 32737 32754 60443 60443 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7994384765625 2 440.796946 879.57934 -0.40481 -0.00017844 2.7996 0.0012341 2.3948 0.0010556 440.79941418008247 48.113 0.42698 51.354 51.123 51.55 3.2405 55 31 2 0 0 0 0.82752 2 10422 10422;10465 0 0 1 95807 + 52494 29491 32737 32754 60444;60445 60444 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7991027832031 2 440.796946 879.57934 -0.36747 -0.00016198 2.5005 0.0011022 2.133 0.00094022 440.7994846502223 48.738 0.77423 51.973 51.544 52.319 3.2345 67 40 2 0 0 0 0.82752 1 10578 10578 0 0 1 77021 + 52495 29491 32737 32754 60446 60446 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.2977294921875 2 440.796946 879.57934 -0.26608 -0.00011729 3.2317 0.0014245 2.9656 0.0013072 440.7995167570957 52.234 0.70807 55.439 54.947 55.655 3.2055 68 44 2 0 0 0 0.82752 1 11666 11666 0 0 1 117680 + 52496 29491 32737 32754 60447 60447 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79937744140625 2 440.796946 879.57934 -0.33559 -0.00014793 3.1233 0.0013768 2.7877 0.0012288 440.7996352591568 54.352 0.98672 57.538 57.26 58.246 3.1856 83 58 2 0 0 0 0.82752 1 12366 12366 0 0 1 104460 + 52497 29491 32737 32754 60448 60448 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.800048828125 2 440.796946 879.57934 -0.35476 -0.00015638 3.0511 0.0013449 2.6963 0.0011885 440.7996077838203 64.202 0.5541 67.376 67.075 67.629 3.1741 71 38 2 0 0 0 0.82752 3 15277 15277;15317;15411 0 0 1 113630 + 52498 29491 32737 32754 60449;60450;60451 60449 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.2974548339844 2 440.796946 879.57934 -0.35168 -0.00015502 2.5842 0.0011391 2.2326 0.00098411 440.7995502902453 65.177 0.47681 68.357 68.156 68.633 3.1795 63 37 2 0 0 0 0.82752 3 15623 15623;15660;15716 0 0 1 93912 + 52499 29491 32737 32754 60452;60453;60454 60452 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7989501953125 2 440.796946 879.57934 -0.35042 -0.00015446 3.0462 0.0013428 2.6958 0.0011883 440.799474291978 65.853 0.99292 69.039 68.639 69.632 3.1853 93 65 2 0 0 0 0.82752 1 15810 15810 0 0 1 112120 + 52500 29491 32737 32754 60455 60455 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7996826171875 2 440.796946 879.57934 -0.34162 -0.00015059 2.6608 0.0011729 2.3192 0.0010223 440.79956797540655 69.351 0.76262 72.556 72.182 72.944 3.2044 83 59 2 0 0 0 0.82752 3 16904 16904;16951;16992 0 0 1 107490 + 52501 29491 32737 32754 60456;60457;60458 60456 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7996826171875 2 440.796946 879.57934 -0.33461 -0.00014749 3.3678 0.0014845 3.0332 0.001337 440.79948275684256 72.518 0.37992 75.745 75.5 75.88 3.2271 43 29 2 0 0 0 0.82752 1 17857 17857 0 0 1 136280 + 52502 29491 32737 32754 60459 60459 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7994384765625 2 440.796946 879.57934 -0.33161 -0.00014617 2.4997 0.0011018 2.1681 0.00095567 440.7997353340453 73.448 0.2494 76.685 76.533 76.783 3.2363 30 21 2 0 0 0 0.82752 3 18138 18138;18151;18164 0 0 1 110050 + 52503 29491 32737 32754 60460;60461;60462 60460 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 441.29754638671875 2 440.796946 879.57934 -0.32514 -0.00014332 2.5685 0.0011322 2.2434 0.00098887 440.79957353052583 76.126 0.55617 79.383 79.166 79.722 3.2573 82 55 2 0 0 0 0.82752 1 18960 18960 0 0 1 106390 + 52504 29491 32737 32754 60463 60463 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.79962158203125 2 440.796946 879.57934 -0.28141 -0.00012404 3.4628 0.0015264 3.1814 0.0014023 440.79952556569464 111.11 0.41077 114.64 114.35 114.76 3.529 64 45 2 0 0 0 0.82752 3 27216 27216;27251;27285 0 0 1 90679 + 52505 29491 32737 32754 60464;60465;60466 60464 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7994079589844 2 440.796946 879.57934 -0.28125 -0.00012397 3.2317 0.0014245 2.9505 0.0013006 440.79960231489775 112.29 0.47547 115.81 115.72 116.19 3.5207 124 63 2 0 0 0 0.82752 1 27588 27588 0 0 1 114040 + 52506 29491 32737 32754 60467 60467 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 440.8001403808594 2 440.796946 879.57934 -0.33939 -0.0001496 3.3358 0.0014704 2.9964 0.0013208 440.79943960572973 70.592 0.63319 73.803 73.372 74.005 3.2113 80 55 2 0 0 0 0.72333 1 17174 17174 0 0 1 132880 + 52507 29491 32737 32754 60468 60468 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 440.7997131347656 2 440.796946 879.57934 -0.30733 -0.00013547 2.4425 0.0010766 2.1351 0.00094116 440.7994970615185 50.061 1.3785 53.287 52.31 53.689 3.2262 110 78 2 0 0 0 0.72333 1 10895 10895 0 0 1 90353 + 52508 29491 32737 32754 60469 60469 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.297607421875 2 440.796946 879.57934 0.06485 2.8586E-05 2.0219 0.00089125 2.0867 0.00091983 440.79945487349966 24.774 1.0735 28.341 27.841 28.914 3.5667 194 125 2 0 0 0 0.82752 4 2722 2722;2759;2829;2868 0 0 1 106440 + 52509 29491 32737 32754 60470;60471;60472;60473 60470 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.7998962402344 2 440.796946 879.57934 0.057003 2.5127E-05 2.1011 0.00092616 2.1581 0.00095128 440.79946445913737 26.542 0.603 30.108 29.828 30.431 3.5667 86 59 2 0 0 0 0.82752 2 3263 3263;3300 0 0 1 116130 + 52510 29491 32737 32754 60474;60475 60474 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.2978515625 2 440.796946 879.57934 0.025064 1.1048E-05 2.3484 0.0010352 2.3734 0.0010462 440.7994219162639 33.623 0.64498 37.143 36.769 37.414 3.5201 97 67 2 0 0 0 0.82752 1 5316 5316 0 0 1 99392 + 52511 29491 32737 32754 60476 60476 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.2981872558594 2 440.796946 879.57934 0.023275 1.026E-05 2.4408 0.0010759 2.4641 0.0010861 440.79945326630207 34.057 0.38847 37.577 37.349 37.738 3.5201 64 38 2 0 0 0 0.82752 2 5355 5355;5395 0 0 1 83853 + 52512 29491 32737 32754 60477;60478 60477 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.7988586425781 2 440.796946 879.57934 0.018627 8.2109E-06 2.0829 0.00091815 2.1016 0.00092636 440.79927903065015 34.987 0.29408 38.501 38.433 38.727 3.5144 50 28 2 0 0 0 0.82752 1 5651 5651 0 0 1 100190 + 52513 29491 32737 32754 60479 60479 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.7998046875 2 440.796946 879.57934 -0.010909 -4.8089E-06 3.9212 0.0017285 3.9103 0.0017237 440.7994144096631 41.567 0.33089 45.073 44.87 45.201 3.506 41 32 2 0 0 0 0.82752 1 7569 7569 0 0 1 217320 + 52514 29491 32737 32754 60480 60480 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.2972412109375 2 440.796946 879.57934 -0.020541 -9.0543E-06 2.002 0.00088247 1.9814 0.00087341 440.79937844358983 43.833 0.36733 47.343 47.092 47.459 3.5103 48 29 2 0 0 0 0.82752 2 8215 8215;8251 0 0 1 99084 + 52515 29491 32737 32754 60481;60482 60481 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.2969970703125 2 440.796946 879.57934 0.10753 4.7397E-05 1.7426 0.00076813 1.8501 0.00081553 440.79932775056585 59.141 0.75837 62.621 62.191 62.949 3.4801 70 47 2 0 0 0 0.82752 1 12974 12974 0 0 1 111050 + 52516 29491 32737 32754 60483 60483 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.7989501953125 2 440.796946 879.57934 0.0031441 1.3859E-06 2.8209 0.0012434 2.824 0.0012448 440.7992585554222 76.496 0.16982 80.006 79.965 80.134 3.5102 33 19 2 0 0 0 0.82752 1 18166 18166 0 0 1 177950 + 52517 29491 32737 32754 60484 60484 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 440.7988586425781 2 440.796946 879.57934 0.020373 8.9802E-06 1.7273 0.00076137 1.7476 0.00077035 440.7993420049066 34.741 0.73438 38.255 37.732 38.466 3.5144 102 75 2 0 0 0 0.72333 1 5651 5651 0 0 1 91537 + 52518 29491 32737 32754 60485 60485 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.29766845703125 2 440.796946 879.57934 0.18986 8.3688E-05 1.8948 0.00083521 2.0846 0.0009189 440.79940705108856 21.768 0.95901 25.413 24.7 25.659 3.6459 153 107 2 0 0 0 0.82752 4 1969 1969;2072;2112;2142 0 0 1 77890 + 52519 29491 32737 32754 60486;60487;60488;60489 60486 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.29730224609375 2 440.796946 879.57934 0.12399 5.4655E-05 1.8231 0.00080362 1.9471 0.00085828 440.7993463370513 31.889 0.5373 35.53 35.325 35.862 3.641 94 54 2 0 0 0 0.82752 2 4856 4856;4908 0 0 1 91871 + 52520 29491 32737 32754 60490;60491 60490 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7997131347656 2 440.796946 879.57934 0.11636 5.1293E-05 2.5351 0.0011175 2.6515 0.0011688 440.7993407852304 33.147 0.20775 36.797 36.627 36.835 3.6497 36 22 2 0 0 0 0.82752 1 5180 5180 0 0 1 125280 + 52521 29491 32737 32754 60492 60492 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7996826171875 2 440.796946 879.57934 0.11392 5.0217E-05 2.3771 0.0010478 2.491 0.001098 440.7993353606177 33.329 0.8108 36.99 36.846 37.656 3.6607 146 88 2 0 0 0 0.82752 3 5227 5227;5258;5298 0 0 1 158820 + 52522 29491 32737 32754 60493;60494;60495 60493 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7994689941406 2 440.796946 879.57934 0.054254 2.3915E-05 2.3329 0.0010283 2.3871 0.0010522 440.7994405863735 49.107 0.39861 52.824 52.634 53.032 3.7175 44 26 2 0 0 0 0.82752 1 9864 9864 0 0 1 119540 + 52523 29491 32737 32754 60496 60496 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.2973937988281 2 440.796946 879.57934 0.097314 4.2896E-05 2.4906 0.0010978 2.5879 0.0011407 440.7992865749636 50.32 1.3612 54.015 53.484 54.846 3.6946 137 86 2 0 0 0 0.82752 2 10265 10265;10483 0 0 1 127160 + 52524 29491 32737 32754 60497;60498 60497 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.29736328125 2 440.796946 879.57934 0.14779 6.5145E-05 1.8381 0.00081022 1.9859 0.00087537 440.7994038862202 65.932 0.83514 69.418 69.041 69.876 3.4866 95 58 2 0 0 0 0.82752 1 15160 15160 0 0 1 131600 + 52525 29491 32737 32754 60499 60499 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.79888916015625 2 440.796946 879.57934 0.12996 5.7284E-05 1.907 0.00084062 2.037 0.00089791 440.79935891095187 68.406 0.29935 71.914 71.775 72.074 3.5083 47 31 2 0 0 0 0.82752 1 15778 15778 0 0 1 152820 + 52526 29491 32737 32754 60500 60500 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7992248535156 2 440.796946 879.57934 0.11727 5.1693E-05 1.773 0.00078152 1.8902 0.00083321 440.7993494333108 75.755 0.2756 79.356 79.251 79.526 3.6011 47 33 2 0 0 0 0.82752 1 17866 17866 0 0 1 121900 + 52527 29491 32737 32754 60501 60501 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7995910644531 2 440.796946 879.57934 0.12253 5.4011E-05 2.3337 0.0010287 2.4562 0.0010827 440.7993327198834 87.47 0.29024 91.198 91.1 91.39 3.7279 53 33 2 0 0 0 0.82752 2 20827 20827;20859 0 0 1 146540 + 52528 29491 32737 32754 60502;60503 60502 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 441.29736328125 2 440.796946 879.57934 0.1441 6.3519E-05 1.7493 0.0007711 1.8934 0.00083462 440.7994223820842 66.513 0.36137 70 69.803 70.164 3.4866 45 28 2 0 0 0 0.72333 1 15160 15160 0 0 1 106640 + 52529 29491 32737 32754 60504 60504 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.8001708984375 2 440.796946 879.57934 0.035546 1.5669E-05 2.5414 0.0011202 2.5769 0.0011359 440.7994813534215 23.464 0.62313 27.215 26.816 27.439 3.7507 98 62 2 0 0 0 0.82752 2 2542 2542;2577 0 0 1 100320 + 52530 29491 32737 32754 60505;60506 60505 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.79937744140625 2 440.796946 879.57934 0.038921 1.7156E-05 2.298 0.001013 2.337 0.0010301 440.79944763249017 25.795 0.58357 29.561 29.13 29.714 3.7663 90 64 2 0 0 0 0.82752 1 3180 3180 0 0 1 109930 + 52531 29491 32737 32754 60507 60507 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.297607421875 2 440.796946 879.57934 0.066711 2.9406E-05 1.8819 0.00082955 1.9486 0.00085896 440.7993496505088 44.585 1.2023 48.222 47.614 48.816 3.6372 118 80 2 0 0 0 0.82752 4 8306 8306;8405;8451;8583 0 0 1 113190 + 52532 29491 32737 32754 60508;60509;60510;60511 60508 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.79931640625 2 440.796946 879.57934 0.049771 2.1939E-05 1.5513 0.00068381 1.6011 0.00070575 440.7992490734808 56.387 0.34462 59.929 59.737 60.082 3.5427 38 28 2 0 0 0 0.82752 1 12039 12039 0 0 1 121800 + 52533 29491 32737 32754 60512 60512 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.2973937988281 2 440.796946 879.57934 0.19207 8.4663E-05 2.2366 0.00098587 2.4286 0.0010705 440.7993623817227 66.488 0.4958 69.996 69.686 70.182 3.5077 58 37 2 0 0 0 0.82752 1 15086 15086 0 0 1 117910 + 52534 29491 32737 32754 60513 60513 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7994384765625 2 440.796946 879.57934 0.19992 8.8122E-05 2.2005 0.00096996 2.4004 0.0010581 440.79938469324685 73.068 0.40645 76.605 76.416 76.822 3.5373 55 37 2 0 0 0 0.82752 1 17097 17097 0 0 1 139530 + 52535 29491 32737 32754 60514 60514 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.2975158691406 2 440.796946 879.57934 0.19893 8.7687E-05 2.4008 0.0010583 2.5997 0.001146 440.79927374592796 73.613 0.4438 77.163 76.836 77.279 3.5505 76 51 2 0 0 0 0.82752 2 17196 17196;17230 0 0 1 126920 + 52536 29491 32737 32754 60515;60516 60515 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.29742431640625 2 440.796946 879.57934 0.19835 8.7431E-05 2.0295 0.00089458 2.2278 0.00098201 440.79933131203336 73.85 0.27869 77.4 77.279 77.558 3.5505 44 32 2 0 0 0 0.82752 1 17293 17293 0 0 1 124250 + 52537 29491 32737 32754 60517 60517 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7998962402344 2 440.796946 879.57934 0.19707 8.6868E-05 3.4711 0.0015301 3.6682 0.0016169 440.7999055656378 74.383 0.15672 77.933 77.854 78.011 3.5505 39 20 2 0 0 0 0.82752 1 17426 17426 0 0 1 130990 + 52538 29491 32737 32754 60518 60518 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7995300292969 2 440.796946 879.57934 0.14772 6.5116E-05 4.1403 0.001825 4.288 0.0018902 440.79939683481 112.33 0.25857 115.99 115.82 116.08 3.6614 47 28 2 0 0 0 0.82752 1 26696 26696 0 0 1 242880 + 52539 29491 32737 32754 60519 60519 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.7995910644531 2 440.796946 879.57934 0.14783 6.5164E-05 3.2386 0.0014276 3.3864 0.0014927 440.79931876872837 112.79 0.50701 116.45 116.07 116.58 3.6568 90 58 2 0 0 0 0.82752 3 26726 26726;26756;26792 0 0 1 218560 + 52540 29491 32737 32754 60520;60521;60522 60520 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 441.2974853515625 2 440.796946 879.57934 0.14785 6.5172E-05 3.3194 0.0014632 3.4672 0.0015283 440.79939950444714 113.8 0.40057 117.46 117.29 117.69 3.6511 66 43 2 0 0 0 0.72333 1 27057 27057 0 0 1 173230 + 52541 29491 32737 32754 60523 60523 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.097215 4.2852E-05 3.1268 0.0013783 3.224 0.0014211 440.7993094692233 51.988 0.077103 51.988 51.961 52.039 0 0.0076326 0.00044814 NaN 0 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 106150 + 52542 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.1395 6.1492E-05 2.53 0.0011152 2.6695 0.0011767 440.7993425444923 78.467 0.66496 78.467 77.933 78.598 0 0.30331 -0.00054355 NaN 0 96 75 2 NaN NaN NaN NaN 0 NaN NaN 0 152600 + 52543 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.090036 3.9688E-05 4.1668 0.0018367 4.2568 0.0018764 440.79925679384013 53.397 0.14773 53.397 53.286 53.434 0 0.09524 0.00088318 NaN 0 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 147150 + 52544 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.11302 4.9819E-05 4.46 0.0019659 4.573 0.0020158 440.79942464264235 69.672 0.23731 69.672 69.52 69.758 0 -0.22713 0.00093845 NaN 0 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 261560 + 52545 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 440.796946 879.57934 0.13285 5.856E-05 3.4011 0.0014992 3.5339 0.0015577 440.799374305474 44.943 0.23436 44.943 44.845 45.08 0 -0.065202 -0.00037978 NaN 0 36 25 2 NaN NaN NaN NaN 0 NaN NaN 0 147250 + 52546 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 440.796946 879.57934 0.091036 4.0128E-05 8.4698 0.0037334 8.5608 0.0037736 440.7991688339498 82.631 0.16634 86.17 86.085 86.251 3.5386 -0.12033 0.001525 NaN 0 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 54396 + 52547 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 440.796946 879.57934 -0.091723 -4.0431E-05 2.0756 0.0009149 1.9838 0.00087447 440.7993209545016 98.327 0.39808 101.82 101.7 102.1 3.4897 -0.094408 -2.6321E-05 NaN 0 74 55 2 NaN NaN NaN NaN 0 NaN NaN 0 191720 + 52548 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 440.796946 879.57934 -0.19991 -8.8118E-05 8.0464 0.0035468 7.8465 0.0034587 440.79943448365725 82.895 0.26755 86.293 86.157 86.425 3.3984 0.0027495 0.0011518 NaN 0 53 34 2 NaN NaN NaN NaN 0 NaN NaN 0 117420 + 52549 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 440.796946 879.57934 -1.0117 -0.00044596 2.9614 0.0013054 1.9497 0.0008594 440.7999383038139 27.193 1.7369 30.535 29.983 31.72 3.3422 -0.14258 -6.7041E-05 NaN 0 219 149 2 NaN NaN NaN NaN 0 NaN NaN 0 73336 + 52550 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 440.796946 879.57934 0.0074163 3.2691E-06 4.6822 0.0020639 4.6896 0.0020672 440.7999939888536 74.601 0.30733 78.091 77.98 78.288 3.49 -0.072712 0.0013538 NaN 0 46 31 2 NaN NaN NaN NaN 0 NaN NaN 0 135150 + 52551 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 440.796946 879.57934 -0.010213 -4.5017E-06 7.4364 0.003278 7.4262 0.0032734 440.79952802444456 82.681 0.071854 86.257 86.227 86.299 3.5753 -0.033626 0.00061402 NaN 0 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 66702 + 52552 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 440.796946 879.57934 0.12028 5.302E-05 9.4604 0.0041701 9.5807 0.0042231 440.7993577775341 82.743 0.17263 86.412 86.366 86.539 3.669 0.1215 0.0023983 NaN 0 30 23 2 NaN NaN NaN NaN 0 NaN NaN 0 58723 + 52553 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 440.796946 879.57934 0.14792 6.5202E-05 2.7954 0.0012322 2.9433 0.0012974 440.7994084293296 110.85 0.4501 114.51 114.22 114.67 3.6654 -0.064677 -0.00030894 NaN 0 99 55 2 NaN NaN NaN NaN 0 NaN NaN 0 118560 + 52554 29491 32737 32754 0.1347332432201256 VVPVLLQL 8 Unmodified _VVPVLLQL_ 0 0 0 REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense REV__L1PA7_dup5095|chr6:57636780-57642372:+|3.6850639800808223|0.4428714440804279|3.06|151.0|252|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 440.796946 879.57934 0.04742 2.0903E-05 10.167 0.0044816 10.215 0.0045025 440.7995044427638 49.592 0.029373 53.221 53.198 53.227 3.6291 -0.080782 0.006173 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 18039 + 52555 29491 32737 32754 0.1347332432201256 VVPVLPKG 8 Unmodified _VVPVLPKG_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000124486.13,USP9X,chrX,+,I30.1,41197511,41198527|26|8.93|2|intron;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MSMS UPN46_class_I_Rep_3 1 404.7697448730469 2 404.768189 807.521825 NaN NaN NaN NaN NaN NaN NaN 68.327 1 68.327 67.827 68.827 0 0 0 0 0.40798 1 15596 15596 0 0 1 52556 2468 32738 32755 60524 60524 0.11036482116435309 VVPVLRGR 8 Unmodified _VVPVLRGR_ 0 0 0 L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|118|1|anti-sense L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|118|1|anti-sense L1PB4_dup6612|chr16:47293227-47295905:-|8.8160209770922|0.0698035467047286|6.98|151.0|118|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 448.2960205078125 2 448.295436 894.57632 0.18055 8.0942E-05 0.38639 0.00017322 0.56694 0.00025416 448.29574129708465 103.93 0.4403 103.93 103.82 104.26 0 67 40 2 0 0 0 0.82752 1 25344 25344 0 0 1 637310 52557 15344 32739 32756 60525 60525 0.1248149398785472 VVPVPLRTGD 10 Unmodified _VVPVPLRTGD_ 0 0 0 REV__nc|ENSG00000110171|O75382-4|TRIM3 REV__nc|ENSG00000110171|O75382-4|TRIM3 MSMS UPN47_class_I_Rep_3 4 526.7967529296875 2 526.808574 1051.60259 NaN NaN NaN NaN NaN NaN NaN 18.354 1 21.708 21.208 22.208 3.3545 0 0 0 0.53105 1 1511 1511 0 0 1 + 52558 18428 32740 32757 60526 60526 0.0788571836869778 VVPVPVELV 9 Unmodified _VVPVPVELV_ 0 0 0 REV__ENST00000474564.1_1_6:75852961-75855988:-|nuORF REV__ENST00000474564.1_1_6:75852961-75855988:-|nuORF MSMS UPN46_class_I_Rep_3 1 475.80108642578125 2 475.799686 949.584819 NaN NaN NaN NaN NaN NaN NaN 85.322 1 85.322 84.822 85.822 0 0 0 0 0.4007 1 20349 20349 0.52476 0 1 + 52559 22524 32741 32758 60527 60527 0.10801003113817842 VVPVRTKGH 9 Unmodified _VVPVRTKGH_ 0 0 0 REV__ENST00000550797.1_1_12:49458888-49462935:-|nuORF REV__ENST00000550797.1_1_12:49458888-49462935:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 496.8039245605469 2 496.803626 991.592698 0.17732 8.8093E-05 0.25754 0.00012795 0.43486 0.00021604 496.8036980019965 107.81 0.40687 111.44 111.35 111.76 3.6313 96 35 5 0 0 0 0.41259 1 26096 26096 7.2892 2.0586 1 157380000 + 52560 20225 32742 32759 60528 60528 0.09656575153951508 VVPWEVFLES 10 Unmodified _VVPWEVFLES_ 0 0 0 REV__HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|26|2|anti-sense REV__HAL1_dup17135|chr12:121435597-121436124:+|1.0560426070551736|0.0727890545095423|3.86|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_2 3 602.8162841796875 2 602.816064 1203.61758 NaN NaN NaN NaN NaN NaN NaN 63.775 1 67.03 66.53 67.53 3.2556 0 0 0 0.53105 1 15149 15149 3.2813 0 1 + 52561 23375 32743 32760 60529 60529 0.023911654459880083 VVPWPHVWR 9 Unmodified _VVPWPHVWR_ 0 0 0 chr12:6951731-6954805|55|13.62|0.41|5.06|+|0|PTPN6,PTPN6|2 chr12:6951731-6954805|55|13.62|0.41|5.06|+|0|PTPN6,PTPN6|2 chr12:6951731-6954805|55|13.62|0.41|5.06|+|0|PTPN6,PTPN6|2 MSMS UPN47_class_I_Rep_1 2 588.3275756835938 2 588.327268 1174.63998 NaN NaN NaN NaN NaN NaN NaN 87.176 1 90.813 90.313 91.313 3.6372 0 0 0 0.40038 1 21778 21778 0.6015 0 1 52562 584 32744 32761 60530 60530 0.059648544249284896 VVPYILFQ 8 Unmodified _VVPYILFQ_ 0 0 0 REV__L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|218|1|anti-sense REV__L1PA6_dup201|chr1:107732241-107738366:+|2.657048205041|0.0479485933055429|5.79|151.0|218|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 489.286865234375 2 489.786579 977.558604 0.27523 0.0001348 3.7515 0.0018374 4.0267 0.0019722 489.7885568841602 79.705 0.033531 79.705 79.692 79.726 0 4 2 2 0 0 0 0.72333 1 18740 18740 0.79363 0 1 52652 + 52563 29852 32745 32762 60531 60531 0.06892733942333962 VVQAVGRGLG 10 Unmodified _VVQAVGRGLG_ 0 0 0 ENSG00000141756|ENST00000321562|FKBP10 ENSG00000141756|ENST00000321562|FKBP10 ENSG00000141756|ENST00000321562|FKBP10 MULTI-MSMS UPN47_class_I_Rep_3 4 478.2872619628906 2 478.287808 954.561064 -0.81987 -0.00039213 0.3446 0.00016482 -0.47527 -0.00022732 478.2875871061596 13.077 0.29068 16.451 16.382 16.673 3.3734 41 31 2 0 0 0 0.56543 1 249 249 0 0 1 49753 52564 3231 32746 32763 60532 60532 0.08196582400012176 VVQHLHKT 8 Unmodified _VVQHLHKT_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|87|2|sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|87|2|sense MSMS UPN48_class_I_Rep_1 5 481.2833251953125 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 92.585 1 96.209 95.709 96.709 3.624 0 0 0 0.40643 1 22248 22248 2.0598 0.21551 1 + 52565 29227 32747 32764 60533 60533 0.06864599745563282 VVQIHYIF 8 Unmodified _VVQIHYIF_ 0 0 0 L1MB7_dup413|chr1:41147491-41148779:-|1.4168527710277987|0.1074562174134862|3.72|151.0|82|3|anti-sense L1MB7_dup413|chr1:41147491-41148779:-|1.4168527710277987|0.1074562174134862|3.72|151.0|82|3|anti-sense L1MB7_dup413|chr1:41147491-41148779:-|1.4168527710277987|0.1074562174134862|3.72|151.0|82|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 510.2488708496094 2 509.789653 1017.56475 0.33268 0.0001696 -2.7027 -0.0013778 -2.37 -0.0012082 510.29160901243944 67.279 0.081161 70.775 70.727 70.808 3.4964 8 5 2 0 0 0 0.72333 1 15441 15441 6.3541 0 1 40579 52566 10829 32748 32765 60534 60534 0.05667252173839188 VVQILLIR 8 Unmodified _VVQILLIR_ 0 0 0 L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|9|2|sense L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|9|2|sense L1MEf_dup4562|chr6:136690764-136691328:-|1.100945316109665|0.0281182834346972|5.29|151.0|9|2|sense MSMS UPN48_class_I_Rep_1 5 477.3291320800781 2 477.328945 952.643337 NaN NaN NaN NaN NaN NaN NaN 85.378 1 88.984 88.484 89.484 3.6059 0 0 0 0.40746 1 20419 20419 0.69038 0 1 52567 13272 32749 32766 60535 60535 0.1651210447895437 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 441.2975769042969 2 440.796946 879.57934 0.14963 6.5955E-05 1.9671 0.00086711 2.1168 0.00093307 440.79941622440015 81.683 0.50628 81.683 81.432 81.938 0 78 50 2 0 0 0 0.82752 1 19240 19240 0.79363 0 1 128310 52568 10518 32750 32767 60536 60536 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 440.7997131347656 2 440.796946 879.57934 0.16141 7.1151E-05 3.3589 0.0014806 3.5203 0.0015517 440.7993297844825 110.94 0.18739 110.94 110.84 111.03 0 33 21 2 0 0 0 0.82752 1 27350 27350 2.5775 0 1 124250 52569 10518 32750 32767 60537 60537 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.79949951171875 2 440.796946 879.57934 -0.43613 -0.00019225 2.6546 0.0011701 2.2185 0.00097789 440.7997095377036 21.744 0.60168 25.419 25.059 25.661 3.6749 102 62 2 0 0 0 0.82752 1 2453 2453 0.79363 0 1 74541 52570 10518 32750 32767 60538 60538 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 441.2974548339844 2 440.796946 879.57934 -0.43272 -0.00019074 2.5771 0.001136 2.1444 0.00094523 440.79968986568315 22.895 1.3296 26.599 25.664 26.994 3.7042 175 123 2 0 0 0 0.82752 2 2493 2493;2700 0.79363 0 1 83130 52571 10518 32750 32767 60539;60540 60539 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7991943359375 2 440.796946 879.57934 -0.42874 -0.00018899 2.9001 0.0012783 2.4713 0.0010893 440.7997198785305 23.616 1.3254 27.346 27.02 28.345 3.7298 152 111 2 0 0 0 0.82752 1 3011 3011 0.69038 0 1 91524 52572 10518 32750 32767 60541 60541 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.8004150390625 2 440.796946 879.57934 -0.40999 -0.00018072 3.1244 0.0013772 2.7145 0.0011965 440.7996653401663 28.749 0.48981 32.515 32.31 32.8 3.7662 65 41 2 0 0 0 0.82752 1 4490 4490 0.69038 0 1 93150 52573 10518 32750 32767 60542 60542 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.799560546875 2 440.796946 879.57934 -0.40624 -0.00017907 3.1419 0.0013849 2.7357 0.0012059 440.79963490272775 29.709 1.1249 33.467 33.021 34.146 3.7578 119 81 2 0 0 0 0.82752 1 4693 4693 0.79363 0 1 103230 52574 10518 32750 32767 60543 60543 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.798828125 2 440.796946 879.57934 -0.39067 -0.00017221 2.851 0.0012567 2.4603 0.0010845 440.7992832091479 34.117 0.45577 37.803 37.507 37.963 3.6859 55 33 2 0 0 0 0.82752 1 6083 6083 0.69038 0 1 134620 52575 10518 32750 32767 60544 60544 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.7991943359375 2 440.796946 879.57934 0.1606 7.0793E-05 3.4352 0.0015142 3.5958 0.001585 440.79937556790134 111.22 0.59373 114.79 114.49 115.09 3.572 97 60 2 0 0 0 0.82752 1 27459 27459 2.5775 0 1 175370 52576 10518 32750 32767 60545 60545 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 440.28497314453125 2 440.796946 879.57934 0.16047 7.0734E-05 4.2519 0.0018742 4.4124 0.001945 440.7994030423765 112.06 0.33574 115.63 115.42 115.76 3.572 59 36 2 0 0 0 0.72333 1 27595 27595 2.5775 0 1 202420 52577 10518 32750 32767 60546 60546 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 440.7996520996094 2 440.796946 879.57934 0.1606 7.0793E-05 3.4352 0.0015142 3.5958 0.001585 440.79937556790134 111.22 0.59373 114.79 114.49 115.09 3.572 97 60 2 0 0 0 0.72333 1 27420 27420 2.5775 0 1 175370 52578 10518 32750 32767 60547 60547 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.79937744140625 2 440.796946 879.57934 -0.68028 -0.00029986 3.0418 0.0013408 2.3615 0.001041 440.7997173911534 30.038 0.9245 33.52 33.22 34.144 3.4821 114 74 2 0 0 0 0.82752 1 4828 4828 2.5775 0 1 87272 52579 10518 32750 32767 60548 60548 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.2971496582031 2 440.796946 879.57934 -0.68025 -0.00029985 2.7416 0.0012085 2.0613 0.00090863 440.79970076138954 30.994 0.59094 34.476 34.144 34.735 3.4821 76 48 2 0 0 0 0.82752 1 5194 5194 0.79363 0 1 91384 52580 10518 32750 32767 60549 60549 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7994079589844 2 440.796946 879.57934 -0.68156 -0.00030043 3.3443 0.0014742 2.6628 0.0011737 440.7996893349149 37.719 0.56374 41.107 40.805 41.369 3.3879 72 43 2 0 0 0 0.82752 1 7158 7158 0.69038 0 1 92678 52581 10518 32750 32767 60550 60550 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.79962158203125 2 440.796946 879.57934 -0.30342 -0.00013375 3.1028 0.0013677 2.7994 0.001234 440.79961294515476 49.638 0.87782 52.981 52.722 53.599 3.3431 78 51 2 0 0 0 0.82752 1 10788 10788 0.69038 0 1 134860 52582 10518 32750 32767 60551 60551 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7993469238281 2 440.796946 879.57934 -0.35597 -0.00015691 3.0239 0.0013329 2.6679 0.001176 440.799558272501 66.182 0.59599 69.441 69.096 69.692 3.2588 62 34 2 0 0 0 0.82752 1 15933 15933 2.5775 0 1 121500 52583 10518 32750 32767 60552 60552 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 441.297607421875 2 440.796946 879.57934 -0.3345 -0.00014745 2.7918 0.0012306 2.4573 0.0010832 440.79947529374124 68.427 0.62878 71.697 71.375 72.004 3.2696 75 55 2 0 0 0 0.82752 1 16620 16620 0.79363 0 1 118790 52584 10518 32750 32767 60553 60553 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 440.7998352050781 2 440.796946 879.57934 -0.092746 -4.0882E-05 3.4953 0.0015407 3.4026 0.0014998 440.79944408907716 112.24 0.17342 115.76 115.66 115.83 3.5226 40 24 2 0 0 0 0.82752 1 27322 27322 2.5775 0 1 100860 52585 10518 32750 32767 60554 60554 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 440.7989196777344 2 440.796946 879.57934 -1.0757 -0.00047417 3.3494 0.0014764 2.2737 0.0010022 440.7999292588674 23.198 0.87417 26.548 25.945 26.82 3.3503 104 71 2 0 0 0 0.82752 1 2846 2846 0.69038 0 1 66440 52586 10518 32750 32767 60555 60555 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.7996826171875 2 440.796946 879.57934 0.020373 8.9802E-06 1.7273 0.00076137 1.7476 0.00077035 440.7993420049066 34.741 0.73438 38.255 37.732 38.466 3.5144 102 75 2 0 0 0 0.82752 1 5608 5608 0.69038 0 1 91537 52587 10518 32750 32767 60556 60556 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 440.7994079589844 2 440.796946 879.57934 0.018627 8.2109E-06 2.0829 0.00091815 2.1016 0.00092636 440.79927903065015 34.987 0.29408 38.501 38.433 38.727 3.5144 50 28 2 0 0 0 0.82752 1 5695 5695 0.69038 0 1 100190 52588 10518 32750 32767 60557 60557 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 440.7994079589844 2 440.796946 879.57934 0.12399 5.4655E-05 1.8231 0.00080362 1.9471 0.00085828 440.7993463370513 31.889 0.5373 35.53 35.325 35.862 3.641 94 54 2 0 0 0 0.82752 1 4822 4822 0.69038 0 1 91871 52589 10518 32750 32767 60558 60558 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 440.79962158203125 2 440.796946 879.57934 0.14785 6.5172E-05 3.3194 0.0014632 3.4672 0.0015283 440.79939950444714 113.8 0.40057 117.46 117.29 117.69 3.6511 66 43 2 0 0 0 0.82752 1 27101 27101 0.69038 0 1 173230 52590 10518 32750 32767 60559 60559 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 440.796946 879.57934 -0.37682 -0.0001661 2.2799 0.001005 1.903 0.00083886 440.799548248682 37.652 0.6281 41.317 41.152 41.78 3.6652 0.10907 -0.00022922 NaN 0.69038 70 47 2 NaN NaN NaN NaN 0 NaN NaN 0 81179 52591 10518 32750 32767 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 440.796946 879.57934 -0.092746 -4.0882E-05 3.4953 0.0015407 3.4026 0.0014998 440.79944408907716 112.24 0.17342 115.76 115.66 115.83 3.5226 -0.036761 -0.00012782 NaN 2.5775 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 100860 52592 10518 32750 32767 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 440.796946 879.57934 -1.0953 -0.00048282 3.9599 0.0017455 2.8646 0.0012627 440.8000241724352 21.795 1.3696 25.145 24.575 25.945 3.3496 -0.18111 0.0009733 NaN 0.79363 209 129 2 NaN NaN NaN NaN 0 NaN NaN 0 74310 52593 10518 32750 32767 0.1347332432200119 VVQIPILV 8 Unmodified _VVQIPILV_ 0 0 0 L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense L1MB4_dup385|chr1:169389319-169390103:+|1.632258023224712|0.4614042590736993|1.82|151.0|40|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 440.796946 879.57934 0.0071256 3.1409E-06 2.2097 0.00097404 2.2169 0.00097718 440.7993738611229 37.694 0.90307 41.2 40.675 41.578 3.5052 -0.0083364 -0.00029105 NaN 0.69038 145 92 2 NaN NaN NaN NaN 0 NaN NaN 0 109610 52594 10518 32750 32767 0.1347332432200119 VVQKEKRY 8 Unmodified _VVQKEKRY_ 0 0 0 REV__L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|45|2|sense REV__L1ME4b_dup2638|chr2:143017943-143021179:-|1.2101684647282485|0.0261776365675776|5.53|145.0|45|2|sense MSMS UPN48_class_I_Rep_1 5 525.3096923828125 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 96.555 1 100.17 99.667 100.67 3.6124 0 0 0 0.40643 1 23266 23266 2.0598 0 1 + 52595 28289 32751 32768 60560 60560 0.08057138088520333 VVQKERPPR 9 Unmodified _VVQKERPPR_ 0 0 0 nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5 nc|ENSG00000067208|O60447|EVI5 nc|ENSG00000067208|O60447|EVI5 MSMS UPN47_class_I_Rep_2 3 554.83251953125 2 554.832914 1107.65128 NaN NaN NaN NaN NaN NaN NaN 84.503 1 87.926 87.426 88.426 3.4232 0 0 0 0.4007 1 21071 21071 0.52476 0 1 52596 1032 32752 32769 60561 60561 0.10175631728407097 VVQKLNRLYI 10 Unmodified _VVQKLNRLYI_ 0 0 0 REV__ENST00000368891.9_1_10:124697547-124708177:-|nuORF REV__ENST00000368891.9_1_10:124697547-124708177:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 623.8908081054688 2 623.387522 1244.76049 0.67281 0.00041942 0.35641 0.00022218 1.0292 0.00064161 623.3876590941178 108.82 0.90051 108.82 108.68 109.58 0 153 69 4 0 0 0 0.54466 1 26627 26627 6.2058 0 1 24422000 + 52597 21945 32753 32770 60562 60562 0.14790217627887614 VVQKNRNV 8 Unmodified _VVQKNRNV_ 0 0 0 MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|30|3|anti-sense MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|30|3|anti-sense MLT1C_dup6968|chr6:72745676-72746177:-|2.576432532685986|0.0099800282462413|8.01|151.0|30|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 478.785400390625 2 478.785433 955.556313 0.24853 0.00011899 -0.070627 -3.3815E-05 0.1779 8.5176E-05 478.78533088623215 82.948 0.59021 86.654 86.393 86.983 3.7066 139 78 2 0 0 0 0.82752 1 19665 19665 5.2307 0 1 240740 52598 16314 32754 32771 60563 60563 0.0767569825721921 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3037109375 2 523.303655 1044.59276 0.32134 0.00016816 -0.10503 -5.4963E-05 0.21631 0.0001132 523.3035186531973 82.762 0.22032 82.762 82.72 82.941 0 45 18 3 0 0 0 0.43153 1 19618 19618 6.2058 0 1 2283400 52599 12000 32755 32772 60564 60564 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3035888671875 2 523.303655 1044.59276 0.32204 0.00016853 -0.048627 -2.5447E-05 0.27342 0.00014308 523.3034493958611 82.99 0.18288 82.99 82.879 83.062 0 47 16 4 0 0 0 0.44742 1 19686 19686 5.2969 0 1 891810 52600 12000 32755 32772 60565 60565 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 523.3035888671875 2 523.303655 1044.59276 0.32375 0.00016942 -0.13105 -6.8581E-05 0.19269 0.00010084 523.3034852072807 83.519 0.53275 83.519 83.349 83.882 0 139 55 3 0 0 0 0.44742 2 19830 19830;19932 5.2969 0 1 1327000 52601 12000 32755 32772 60566;60567 60566 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 523.3037719726562 2 523.303655 1044.59276 0.33814 0.00017695 -0.32169 -0.00016834 0.016455 8.6108E-06 523.3033180396045 79.787 1.211 83.252 82.198 83.409 3.465 234 120 3 0 0 0 0.47493 1 19737 19737 3.2813 3.2813 1 592380 52602 12000 32755 32772 60568 60568 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 523.3035278320312 2 523.303655 1044.59276 0.088594 4.6361E-05 -0.024845 -1.3002E-05 0.063749 3.336E-05 523.3035115597612 79.677 1.4533 83.033 82.138 83.591 3.3554 344 160 3 0 0 0 0.44742 1 19868 19868 5.2969 0 1 405110 52603 12000 32755 32772 60569 60569 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 523.3037719726562 2 523.303655 1044.59276 0.36077 0.00018879 -0.36018 -0.00018849 0.00058247 3.0481E-07 523.3033199135757 80.002 1.3903 83.311 82.157 83.547 3.309 245 141 3 0 0 0 0.44742 1 19856 19856 5.2969 0 1 459950 52604 12000 32755 32772 60570 60570 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 523.677734375 2 523.303655 1044.59276 0.37887 0.00019826 -0.28518 -0.00014924 0.093681 4.9024E-05 523.303400026894 79.303 1.4077 82.937 82.06 83.468 3.6331 303 165 2 0 0 0 0.47493 1 18713 18713 3.2813 0 1 437320 52605 12000 32755 32772 60571 60571 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 523.303466796875 2 523.303655 1044.59276 0.46175 0.00024164 -0.42709 -0.0002235 0.034655 1.8135E-05 523.3033120640486 77.491 0.93759 81.092 80.53 81.468 3.6016 149 81 2 0 0 0 0.49026 1 18309 18309 1.6526 0 1 216330 52606 12000 32755 32772 60572 60572 0.07224530363282611 VVQKQKSTQ 9 Unmodified _VVQKQKSTQ_ 0 0 0 L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense L1MD2_dup4293|chr7:66713428-66714653:-|1.203019036422855|0.4017188029290588|1.58|151.0|10|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 523.303655 1044.59276 0.32204 0.00016853 -0.048627 -2.5447E-05 0.27342 0.00014308 523.3034493958611 82.99 0.18288 82.99 82.879 83.062 0 0.024623 9.7429E-05 NaN 5.2969 47 16 4 NaN NaN NaN NaN 0 NaN NaN 0 891810 52607 12000 32755 32772 0.07224530363282611 VVQLEQER 8 Unmodified _VVQLEQER_ 0 0 0 REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 500.2134094238281 2 500.774731 999.534909 -0.088257 -4.4197E-05 0.046449 2.3261E-05 -0.041807 -2.0936E-05 500.77472479720484 23.786 0.19775 23.786 23.643 23.84 0 27 21 2 0 0 0 0.72333 1 2999 2999 4.756 0.42677 1 25504 + 52608 22533 32756 32773 60573 60573 0.035122684378507074 VVQLLSLP 8 Unmodified _VVQLLSLP_ 0 0 0 ENST00000505104.5_1_4:9882098-10027590:-|nuORF;nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9 ENST00000505104.5_1_4:9882098-10027590:-|nuORF ENST00000505104.5_1_4:9882098-10027590:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 435.2510986328125 2 434.778754 867.542954 -0.38557 -0.00016764 0.12553 5.4578E-05 -0.26004 -0.00011306 434.7802529399601 72.391 0.16223 75.688 75.587 75.749 3.2971 21 14 2 0 0 0 0.72333 1 17741 17741 2.3027 0 1 38652 52609 1901 32757 32774 60574 60574 0.10388447425293634 VVQLVLTA 8 Unmodified _VVQLVLTA_ 0 0 0 REV__nc|ENSG00000134571|Q14896-2|MYBPC3 REV__nc|ENSG00000134571|Q14896-2|MYBPC3 MSMS UPN47_class_I_Rep_2 3 421.7698059082031 2 421.770929 841.527304 NaN NaN NaN NaN NaN NaN NaN 87.76 1 91.207 90.707 91.707 3.4471 0 0 0 0.40746 1 21816 21816 0.69038 0 1 + 52610 19103 32758 32775 60575 60575 0.10020160908220532 VVQPSSFFN 9 Unmodified _VVQPSSFFN_ 0 0 0 L1MB7_dup7888|chr6:110447486-110448449:-|1.3803564908673314|0.0100646410561371|7.1|150.0|49|2|anti-sense L1MB7_dup7888|chr6:110447486-110448449:-|1.3803564908673314|0.0100646410561371|7.1|150.0|49|2|anti-sense L1MB7_dup7888|chr6:110447486-110448449:-|1.3803564908673314|0.0100646410561371|7.1|150.0|49|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.7379760742188 2 512.758549 1023.50255 0.2849 0.00014608 -1.1637 -0.00059671 -0.87884 -0.00045063 512.757496659393 74.138 0.52949 77.374 76.988 77.518 3.2363 109 59 3 0 0 0 0.43153 1 18338 18338 6.2058 0 1 143190 52611 10878 32759 32776 60576 60576 -0.008265189651410765 VVQQKIRQ 8 Unmodified _VVQQKIRQ_ 0 0 0 REV__L1MC5_dup1792|chr2:165937869-165939213:+|1.1432893667292674|0.080262917632423|3.83|151.0|43|3|sense REV__L1MC5_dup1792|chr2:165937869-165939213:+|1.1432893667292674|0.080262917632423|3.83|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.8088684082031 2 499.808908 997.603263 0.29882 0.00014935 -0.023647 -1.1819E-05 0.27518 0.00013754 499.8088470160766 107.62 0.12493 111.29 111.24 111.36 3.6724 24 16 3 0 0 0 0.82752 1 26366 26366 23.148 0 1 1651800 + 52612 27072 32760 32777 60577 60577 0.10436557808361613 VVQQVVNL 8 Unmodified _VVQQVVNL_ 0 0 0 REV__ENST00000609975.1_1_2:96191991-96192402:-|nuORF REV__ENST00000609975.1_1_2:96191991-96192402:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 450.27337646484375 2 449.77146 897.528367 0.071042 3.1952E-05 -0.38548 -0.00017338 -0.31443 -0.00014142 449.77129126456134 76.08 0.46587 79.483 79.363 79.829 3.4034 70 41 2 0 0 0 0.82752 1 18874 18874 16.942 0 1 127540 + 52613 23238 32761 32778 60578 60578 0.07550375277128296 VVQRILKH 8 Unmodified _VVQRILKH_ 0 0 0 nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP nc|ENSG00000153815|Q8IY22-3|CMIP nc|ENSG00000153815|Q8IY22-3|CMIP MSMS UPN48_class_I_Rep_1 5 496.82037353515625 2 496.821818 991.629084 NaN NaN NaN NaN NaN NaN NaN 64.088 1 67.546 67.046 68.046 3.4578 0 0 0 0.40746 1 14480 14480 0.69038 0 1 52614 3650 32762 32779 60579 60579 0.13293452050641008 VVQRSIER 8 Unmodified _VVQRSIER_ 0 0 0 nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;chr1:39215429-39231182|151|40.97|0.47|6.44|+|ENST00000671089|MACF1,MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3-5|MACF1 MSMS UPN46_class_I_Rep_3 1 493.7905578613281 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 81.84 1 81.84 81.34 82.34 0 0 0 0 0.40746 1 19351 19351 0.69038 0 1 52615 2569 32763 32780 60580 60580 0.07351680911654057 VVQRVSLLLL 10 Unmodified _VVQRVSLLLL_ 0 0 0 nc|ENSG00000148482|Q504Y0-2|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12 nc|ENSG00000148482|Q504Y0-2|SLC39A12 nc|ENSG00000148482|Q504Y0-2|SLC39A12 MSMS UPN46_class_I_Rep_3 1 570.3807983398438 2 570.379166 1138.74378 NaN NaN NaN NaN NaN NaN NaN 12.144 1 12.144 11.644 12.644 0 0 0 0 0.53105 1 36 36 0.40072 0 1 52616 3511 32764 32781 60581 60581 0.17995716741961587 VVQRVVAL 8 Unmodified _VVQRVVAL_ 0 0 0 ENST00000586020.1_1_19:4529720-4540017:-|nuORF;ENSG00000214456|ENST00000381848|PLIN5 ENST00000586020.1_1_19:4529720-4540017:-|nuORF ENST00000586020.1_1_19:4529720-4540017:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 442.23193359375 2 442.28982 882.565087 -0.66127 -0.00029247 0.60021 0.00026547 -0.061059 -2.7006E-05 442.2901000632799 40.559 0.5543 43.93 43.427 43.982 3.3712 48 36 2 0 0 0 0.72333 1 8086 8086 4.756 0 1 87869 52617 5617 32765 32782 60582 60582 0.11910671893701874 VVQRVVAL 8 Unmodified _VVQRVVAL_ 0 0 0 ENST00000586020.1_1_19:4529720-4540017:-|nuORF;ENSG00000214456|ENST00000381848|PLIN5 ENST00000586020.1_1_19:4529720-4540017:-|nuORF ENST00000586020.1_1_19:4529720-4540017:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 442.2896728515625 2 442.28982 882.565087 -0.78281 -0.00034623 0.65374 0.00028914 -0.12907 -5.7088E-05 442.2901555840812 40.588 0.90235 43.825 43.333 44.236 3.2372 82 56 2 0 0 0 0.72333 1 8206 8206 5.2307 0 1 80453 52618 5617 32765 32782 60583 60583 0.11910671893701874 VVQSIPLL 8 Unmodified _VVQSIPLL_ 0 0 0 L1MC1_dup5853|chr7:30217603-30221109:+|1.814414193144391|0.2769317681819728|2.71|151.0|220|2|anti-sense L1MC1_dup5853|chr7:30217603-30221109:+|1.814414193144391|0.2769317681819728|2.71|151.0|220|2|anti-sense L1MC1_dup5853|chr7:30217603-30221109:+|1.814414193144391|0.2769317681819728|2.71|151.0|220|2|anti-sense MSMS UPN46_class_I_Rep_3 1 434.78021240234375 2 434.778754 867.542954 NaN NaN NaN NaN NaN NaN NaN 38.566 1 38.566 38.066 39.066 0 0 0 0 0.40604 1 7352 7352 2.5775 0 1 52619 11172 32766 32783 60584 60584 0.10388447425293634 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN46_class_I_Rep_3 1 457.26434326171875 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 75.539 1 75.539 75.039 76.039 0 0 0 0 0.4044 1 17569 17569 4.756 0 1 52620 7359 32767 32784 60585 60585 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN46_class_I_Rep_3 1 457.2643737792969 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 75.663 1 75.663 75.163 76.163 0 0 0 0 0.4044 1 17605 17605 4.756 0 1 52621 7359 32767 32784 60586 60586 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN46_class_I_Rep_3 1 457.2641906738281 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 76.046 1 76.046 75.546 76.546 0 0 0 0 0.4044 1 17717 17717 4.756 0 1 52622 7359 32767 32784 60587 60587 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN46_class_I_Rep_3 1 457.2642822265625 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 76.164 1 76.164 75.664 76.664 0 0 0 0 0.4044 1 17751 17751 4.756 0 1 52623 7359 32767 32784 60588 60588 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN48_class_I_Rep_1 5 457.26409912109375 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 73.704 1 77.185 76.685 77.685 3.4812 0 0 0 0.4044 1 17384 17384 4.756 0 1 52624 7359 32767 32784 60589 60589 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 457.26434326171875 2 457.264333 912.514114 0.23289 0.00010649 -0.1778 -8.1302E-05 0.055086 2.5189E-05 457.26412247260816 72.237 1.4525 75.763 75.254 76.706 3.5266 245 134 3 0 0 0 0.82752 1 16823 16823 4.756 0 1 287280 52625 7359 32767 32784 60590 60590 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN48_class_I_Rep_3 7 457.2642822265625 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 72.477 1 76.005 75.505 76.505 3.5276 0 0 0 0.40625 1 16896 16896 2.3027 0 1 52626 7359 32767 32784 60591 60591 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN48_class_I_Rep_3 7 457.26434326171875 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 72.739 1 76.276 75.776 76.776 3.5373 0 0 0 0.4044 1 16975 16975 4.756 0 1 52627 7359 32767 32784 60592 60592 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN48_class_I_Rep_3 7 457.2642822265625 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 73.102 1 76.64 76.14 77.14 3.5373 0 0 0 0.4044 1 17087 17087 4.756 0 1 52628 7359 32767 32784 60593 60593 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MSMS UPN48_class_I_Rep_3 7 457.26416015625 2 457.264333 912.514114 NaN NaN NaN NaN NaN NaN NaN 73.232 1 76.769 76.269 77.269 3.5373 0 0 0 0.4044 1 17125 17125 4.756 0 1 52629 7359 32767 32784 60594 60594 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 457.264333 912.514114 0.062011 2.8356E-05 1.0683 0.00048848 1.1303 0.00051683 457.26447707219995 71.991 0.078987 75.366 75.295 75.374 3.3751 -0.14285 0.0011049 NaN 4.756 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 42978 52630 7359 32767 32784 0.054357228488470355 VVQVQRAN 8 Unmodified _VVQVQRAN_ 0 0 0 ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF ENST00000542466.2_1_12:58120838-58121579:+|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 457.264333 912.514114 0.074962 3.4277E-05 0.56641 0.000259 0.64137 0.00029328 457.2644831137244 71.926 0.22778 75.398 75.256 75.484 3.4718 -0.11127 0.00064599 NaN 4.756 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 74592 52631 7359 32767 32784 0.054357228488470355 VVQWSQLH 8 Unmodified _VVQWSQLH_ 0 0 0 Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|133|3|anti-sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|133|3|anti-sense Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|133|3|anti-sense MSMS UPN46_class_I_Rep_3 1 498.78118896484375 2 498.766709 995.518865 NaN NaN NaN NaN NaN NaN NaN 34.032 1 34.032 33.532 34.532 0 0 0 0 0.40625 1 6027 6027 2.3027 0 1 52632 33053 32768 32785 60595 60595 0.020926069916072265 VVRARGQGRKA 11 Unmodified _VVRARGQGRKA_ 0 0 0 REV__THE1B-int_dup3014|chr10:87471168-87472760:-|1.719951810609739|0.0597466150504814|4.85|134.0|6|1|sense REV__THE1B-int_dup3014|chr10:87471168-87472760:-|1.719951810609739|0.0597466150504814|4.85|134.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 599.36767578125 2 599.367987 1196.72142 NaN NaN NaN NaN NaN NaN NaN 13.103 1 16.477 15.977 16.977 3.3734 0 0 0 0.38417 1 232 232 0 0 1 + 52633 32257 32769 32786 60596 60596 0.13092930116908974 VVRCLFKY 8 Unmodified _VVRCLFKY_ 0 0 0 L1ME1_dup21246|chr11:73077210-73078105:+|2.7652057236247107|0.0710581422404379|5.28|151.0|56|2|anti-sense L1ME1_dup21246|chr11:73077210-73078105:+|2.7652057236247107|0.0710581422404379|5.28|151.0|56|2|anti-sense L1ME1_dup21246|chr11:73077210-73078105:+|2.7652057236247107|0.0710581422404379|5.28|151.0|56|2|anti-sense MSMS UPN48_class_I_Rep_1 5 514.2919311523438 2 514.291505 1026.56846 NaN NaN NaN NaN NaN NaN NaN 73.403 1 76.884 76.384 77.384 3.4812 0 0 0 0.40738 1 17294 17294 0.79363 0 1 52634 12293 32770 32787 60597 60597 0.05623598676061192 VVRDFTSLF 9 Unmodified _VVRDFTSLF_ 0 0 0 L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|58|2|anti-sense L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|58|2|anti-sense L1MEj_dup213|chr2:39759552-39760635:+|2.472863829678528|0.4575512795142993|2.43|151.0|58|2|anti-sense MSMS UPN47_class_I_Rep_1 2 542.3079833984375 2 542.295299 1082.57605 NaN NaN NaN NaN NaN NaN NaN 65.586 1 68.942 68.442 69.442 3.3557 0 0 0 0.28335 1 15655 15655 11.64 0 1 52635 13465 32771 32788 60598 60598 0.038060294773458736 VVRFLGRRGGL 11 Unmodified _VVRFLGRRGGL_ 0 0 0 nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 MULTI-MSMS UPN48_class_I_Rep_1 5 615.382568359375 2 615.383106 1228.75166 0.42245 0.00025997 -0.73233 -0.00045066 -0.30988 -0.00019069 615.3824169044392 107.88 0.31636 111.51 111.44 111.76 3.6313 72 27 4 0 0 0 0.28469 1 26037 26037 17.113 8.3675 1 11481000 52636 3017 32772 32789 60599 60599 0.14643288782076525 VVRFLGRRGGL 11 Unmodified _VVRFLGRRGGL_ 0 0 0 nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 MULTI-MATCH UPN47_class_I_Rep_1 2 2 615.383106 1228.75166 0.54132 0.00033312 -0.86384 -0.00053159 -0.32252 -0.00019847 615.3829163811398 107.97 0.054382 111.61 111.57 111.63 3.6355 -0.0021581 -4.9812E-05 NaN 17.113 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 955050 52637 3017 32772 32789 0.14643288782076525 VVRFLGRRGGL 11 Unmodified _VVRFLGRRGGL_ 0 0 0 nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 MULTI-MATCH UPN47_class_I_Rep_3 4 2 615.383106 1228.75166 0.5109 0.0003144 -1.3098 -0.00080601 -0.79888 -0.00049162 615.3817922132824 107.98 0.024651 111.52 111.51 111.53 3.5382 -0.088269 -0.00059866 NaN 17.113 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1487700 52638 3017 32772 32789 0.14643288782076525 VVRFLGRRGGL 11 Unmodified _VVRFLGRRGGL_ 0 0 0 nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 MULTI-MATCH UPN48_class_I_Rep_2 6 2 615.383106 1228.75166 0.49108 0.0003022 -1.6106 -0.00099112 -1.1195 -0.00068892 615.3819689116691 108.12 0.13482 111.8 111.72 111.85 3.6746 0.19118 -0.00096888 NaN 17.113 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1367600 52639 3017 32772 32789 0.14643288782076525 VVRFLGRRGGL 11 Unmodified _VVRFLGRRGGL_ 0 0 0 nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 nc|ENSG00000137266|A1A5C7-3|SLC22A23 MULTI-MATCH UPN48_class_I_Rep_3 7 2 615.383106 1228.75166 0.57295 0.00035258 -0.9111 -0.00056068 -0.33816 -0.0002081 615.3825372927479 107.93 0.06015 111.61 111.6 111.66 3.6813 -0.0012688 -0.00010799 NaN 17.113 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2733900 52640 3017 32772 32789 0.14643288782076525 VVRFLGSQD 9 Unmodified _VVRFLGSQD_ 0 0 0 L1MDa_dup2020|chr5:76647852-76649562:+|1.991043406991984|0.032779216147736|5.92|151.0|5|1|sense L1MDa_dup2020|chr5:76647852-76649562:+|1.991043406991984|0.032779216147736|5.92|151.0|5|1|sense L1MDa_dup2020|chr5:76647852-76649562:+|1.991043406991984|0.032779216147736|5.92|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 510.77691650390625 2 510.777274 1019.53999 NaN NaN NaN NaN NaN NaN NaN 67.051 1 70.314 69.814 70.814 3.2636 0 0 0 0.39428 1 16148 16148 2.0598 0 1 52641 12106 32773 32790 60600 60600 0.031005723004795982 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 469.33197021484375 2 469.331488 936.648422 NaN NaN NaN NaN NaN NaN NaN 68.15 1 68.15 67.65 68.65 0 0 0 0 0.40798 1 15549 15549 0 0 1 52642 16378 32774 32791 60601 60601 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 469.32818603515625 2 469.331488 936.648422 -0.39861 -0.00018708 -3.4008 -0.0015961 -3.7994 -0.0017832 469.3282742261868 15.16 0.47231 18.657 18.529 19.002 3.4968 91 56 2 0 0 0 0.82752 1 822 822 0 0 1 56774 52643 16378 32774 32791 60602 60602 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 469.3286437988281 2 469.331488 936.648422 -0.38881 -0.00018248 -4.3643 -0.0020483 -4.7531 -0.0022308 469.3284151081932 17.921 0.27399 21.472 21.276 21.55 3.5504 65 32 3 0 0 0 0.82752 2 1375 1375;1407 0 0 1 56541 52644 16378 32774 32791 60603;60604 60603 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 469.32855224609375 2 469.331488 936.648422 -0.38322 -0.00017986 -3.9181 -0.0018389 -4.3013 -0.0020187 469.32845309205464 19.396 0.17183 23.008 22.914 23.085 3.6118 37 18 3 0 0 0 0.82752 1 1775 1775 0 0 1 38170 52645 16378 32774 32791 60605 60605 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 469.3280334472656 2 469.331488 936.648422 -0.34165 -0.00016035 -3.232 -0.0015169 -3.5737 -0.0016772 469.3284739818527 18.09 0.43097 21.48 21.278 21.709 3.3898 68 47 2 0 0 0 0.72333 1 1448 1448 0 0 1 35513 52646 16378 32774 32791 60606 60606 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 469.3281555175781 2 469.331488 936.648422 -0.85482 -0.0004012 -3.3301 -0.0015629 -4.1849 -0.0019641 469.3284543776745 17.193 0.53398 20.551 20.313 20.847 3.3581 106 61 3 0 0 0 0.82752 2 1166 1166;1209 0 0 1 57689 52647 16378 32774 32791 60607;60608 60607 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 469.3280334472656 2 469.331488 936.648422 -0.8303 -0.00038968 -3.2058 -0.0015046 -4.0361 -0.0018943 469.32872566270794 18.831 0.33467 22.186 21.9 22.235 3.3545 62 33 3 0 0 0 0.82752 2 1584 1584;1620 0 0 1 36730 52648 16378 32774 32791 60609;60610 60609 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 469.32769775390625 2 469.331488 936.648422 -0.82753 -0.00038839 -3.9935 -0.0018743 -4.8211 -0.0022627 469.3286843783165 18.942 0.23029 22.297 22.207 22.437 3.3545 37 20 3 0 0 0 0.82752 1 1680 1680 0 0 1 44442 52649 16378 32774 32791 60611 60611 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 469.3279113769531 2 469.331488 936.648422 -0.8258 -0.00038757 -3.4118 -0.0016013 -4.2376 -0.0019888 469.32863050753764 19.142 0.18267 22.497 22.406 22.589 3.3545 29 19 2 0 0 0 0.82752 1 1737 1737 0 0 1 31741 52650 16378 32774 32791 60612 60612 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 469.8328857421875 2 469.331488 936.648422 0.31445 0.00014758 -4.1886 -0.0019659 -3.8742 -0.0018183 469.327973604365 12.838 0.26993 16.493 16.342 16.612 3.6549 69 37 3 0 0 0 0.72333 1 141 141 0 0 1 62530 52651 16378 32774 32791 60613 60613 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 469.331488 936.648422 -0.38655 -0.00018142 -4.5727 -0.0021461 -4.9592 -0.0023275 469.3283768676901 18.545 0.38642 22.126 21.891 22.277 3.5806 -0.096929 2.9072E-05 NaN 0 77 45 3 NaN NaN NaN NaN 0 NaN NaN 0 55358 52652 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 469.331488 936.648422 -0.39353 -0.0001847 -3.8514 -0.0018076 -4.245 -0.0019923 469.328328589503 16.755 0.8737 20.277 19.571 20.444 3.5224 -0.10832 0.00040159 NaN 0 162 101 3 NaN NaN NaN NaN 0 NaN NaN 0 62614 52653 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 469.331488 936.648422 -0.38499 -0.00018069 -4.3482 -0.0020408 -4.7332 -0.0022215 469.3284306599131 18.969 0.63438 22.55 22.277 22.912 3.5806 -0.025091 -0.00024725 NaN 0 111 78 2 NaN NaN NaN NaN 0 NaN NaN 0 45743 52654 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 469.331488 936.648422 -0.34194 -0.00016048 -3.2904 -0.0015443 -3.6324 -0.0017048 469.32840919454753 19.736 0.18915 23.132 23.093 23.282 3.3963 0.036161 0.0012249 NaN 0 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 23101 52655 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 469.331488 936.648422 -0.34229 -0.00016065 -3.677 -0.0017257 -4.0193 -0.0018864 469.32848947316876 19.282 0.60069 22.678 22.493 23.093 3.3963 0.10323 0.00038279 NaN 0 94 60 2 NaN NaN NaN NaN 0 NaN NaN 0 38793 52656 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 469.331488 936.648422 0.19907 9.3431E-05 -5.0293 -0.0023604 -4.8302 -0.002267 469.328073738881 18.714 0.22174 22.246 22.102 22.324 3.5313 0.022884 -0.00039952 NaN 0 55 28 3 NaN NaN NaN NaN 0 NaN NaN 0 50489 52657 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 469.331488 936.648422 0.19465 9.1357E-05 -4.6424 -0.0021788 -4.4478 -0.0020875 469.3281841094147 19.464 0.28224 23.002 22.915 23.197 3.5378 -0.093744 -4.4192E-05 NaN 0 43 32 2 NaN NaN NaN NaN 0 NaN NaN 0 44325 52658 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 469.331488 936.648422 0.20182 9.4721E-05 -4.5203 -0.0021215 -4.3185 -0.0020268 469.3280884275411 17.953 0.65764 21.479 21.168 21.825 3.5261 0.028575 -3.0633E-05 NaN 0 133 84 2 NaN NaN NaN NaN 0 NaN NaN 0 57263 52659 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 469.331488 936.648422 0.2148 0.00010081 -4.254 -0.0019965 -4.0392 -0.0018957 469.3279432534706 13.252 0.67024 16.765 16.298 16.968 3.5133 0.040561 6.0921E-05 NaN 0 199 93 3 NaN NaN NaN NaN 0 NaN NaN 0 82451 52660 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 469.331488 936.648422 0.20532 9.6365E-05 -4.4054 -0.0020676 -4.2001 -0.0019712 469.3280256859895 17.069 0.93372 20.595 20.234 21.168 3.5261 0.20985 -0.00011844 NaN 0 181 123 2 NaN NaN NaN NaN 0 NaN NaN 0 54547 52661 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 469.331488 936.648422 0.21426 0.00010056 -4.4406 -0.0020841 -4.2263 -0.0019836 469.3279321495305 14.854 0.8245 18.372 17.786 18.611 3.5184 -0.026323 -0.00018777 NaN 0 175 111 2 NaN NaN NaN NaN 0 NaN NaN 0 75101 52662 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 469.331488 936.648422 0.30433 0.00014283 -4.9416 -0.0023193 -4.6373 -0.0021764 469.3279499020185 16.466 0.506 20.119 19.88 20.386 3.6527 -0.26709 -0.00062173 NaN 0 127 69 3 NaN NaN NaN NaN 0 NaN NaN 0 60668 52663 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 469.331488 936.648422 0.31445 0.00014758 -4.6961 -0.002204 -4.3816 -0.0020564 469.3279383159278 14.512 0.33208 18.166 17.981 18.313 3.6542 -0.23201 -0.00042757 NaN 0 89 45 3 NaN NaN NaN NaN 0 NaN NaN 0 76128 52664 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 469.331488 936.648422 0.083369 3.9128E-05 -5.2277 -0.0024535 -5.1443 -0.0024144 469.32812593167773 19.62 0.19151 23.241 23.195 23.386 3.6215 0.14544 -0.00059358 NaN 0 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 47742 52665 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 469.331488 936.648422 0.080972 3.8003E-05 -4.8613 -0.0022816 -4.7803 -0.0022436 469.3281048190045 17.807 0.51893 21.371 21.145 21.664 3.5637 -0.079661 -0.00035071 NaN 0 122 65 3 NaN NaN NaN NaN 0 NaN NaN 0 49603 52666 16378 32774 32791 0.17756408341540464 VVRILKLP 8 Unmodified _VVRILKLP_ 0 0 0 MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MLT1F_dup1701|chr6:166984910-166985419:-|1.7553767138302765|0.211086032258208|3.06|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 469.331488 936.648422 0.076943 3.6112E-05 -4.3889 -0.0020598 -4.3119 -0.0020237 469.32797372832283 13.384 0.9333 16.916 16.43 17.363 3.5314 0.19104 -6.5724E-05 NaN 0 253 129 3 NaN NaN NaN NaN 0 NaN NaN 0 79276 52667 16378 32774 32791 0.17756408341540464 VVRKHTLRI 9 Unmodified _VVRKHTLRI_ 0 0 0 L1MD_dup2654|chr5:76916180-76916835:+|5.20073467839256|0.0235152041412547|7.79|149.0|40|2|anti-sense L1MD_dup2654|chr5:76916180-76916835:+|5.20073467839256|0.0235152041412547|7.79|149.0|40|2|anti-sense L1MD_dup2654|chr5:76916180-76916835:+|5.20073467839256|0.0235152041412547|7.79|149.0|40|2|anti-sense MSMS UPN46_class_I_Rep_3 1 561.36669921875 2 561.366924 1120.7193 NaN NaN NaN NaN NaN NaN NaN 74.687 1 74.687 74.187 75.187 0 0 0 0 0.4029 1 17335 17335 0 0 1 52668 11874 32775 32792 60614 60614 0.1637650137906803 VVRKILLLQ 9 Unmodified _VVRKILLLQ_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MSMS UPN46_class_I_Rep_3 1 541.3772583007812 2 541.376426 1080.7383 NaN NaN NaN NaN NaN NaN NaN 105.9 1 105.9 105.4 106.4 0 0 0 0 0.4029 1 25830 25830 0 0 1 52669 1436 32776 32793 60615 60615 0.20116037950151622 VVRKKAQN 8 Unmodified _VVRKKAQN_ 0 0 0 REV__ENSG00000119938|ENST00000238994|PPP1R3C REV__ENSG00000119938|ENST00000238994|PPP1R3C MSMS UPN47_class_I_Rep_2 3 471.7952575683594 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 18.295 1 21.685 21.185 22.185 3.3898 0 0 0 0.40746 1 1522 1522 0.69038 0 1 + 52670 18692 32777 32794 60616 60616 0.1039228863688777 VVRKKKHKKV 10 Unmodified _VVRKKKHKKV_ 0 0 0 REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF MSMS UPN46_class_I_Rep_3 1 625.4331665039062 2 625.432599 1248.85064 NaN NaN NaN NaN NaN NaN NaN 108.89 1 108.89 108.39 109.39 0 0 0 0 0.53105 1 26670 26670 0.40072 0 1 + 52671 19142 32778 32795 60617 60617 0.23617311746966152 VVRKLALL 8 Unmodified _VVRKLALL_ 0 0 0 REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|90|3|sense REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|90|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 456.3234558105469 2 456.323663 910.632772 0.033742 1.5397E-05 -0.12577 -5.7393E-05 -0.092031 -4.1996E-05 456.3235469885504 44.647 0.84537 48.16 47.803 48.648 3.5132 78 59 2 0 0 0 0.82752 3 8514 8514;8553;8620 16.942 0 1 106580 + 52672 30088 32779 32796 60618;60619;60620 60618 0.17388121824501468 VVRKLALL 8 Unmodified _VVRKLALL_ 0 0 0 REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|90|3|sense REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|90|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 456.3238220214844 2 456.323663 910.632772 0.095732 4.3685E-05 -0.12586 -5.7433E-05 -0.030127 -1.3748E-05 456.3235130018032 44.39 0.78559 48.027 47.628 48.414 3.6372 73 54 2 0 0 0 0.82752 4 8335 8335;8375;8419;8463 16.942 0 1 134250 + 52673 30088 32779 32796 60621;60622;60623;60624 60621 0.17388121824501468 VVRKRLKPK 9 Unmodified _VVRKRLKPK_ 0 0 0 REV__Tigger2b_Pri_dup1764|chr15:72578407-72578722:-|1.1344363006149338|0.153003704188441|2.89|151.0|5|2|sense REV__Tigger2b_Pri_dup1764|chr15:72578407-72578722:-|1.1344363006149338|0.153003704188441|2.89|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 562.3927612304688 2 562.392942 1122.77133 NaN NaN NaN NaN NaN NaN NaN 91.215 1 91.215 90.715 91.715 0 0 0 0 0.4029 1 22022 22022 0 0 1 + 52674 32694 32780 32797 60625 60625 0.2148566479281726 VVRKRVLL 8 Unmodified _VVRKRVLL_ 0 0 0 REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 491.309326171875 2 491.847836 981.681119 0.26924 0.00013243 0.94033 0.0004625 1.2096 0.00059493 491.8479551497515 108.65 0.20479 112.19 112.08 112.29 3.5382 28 22 2 0 0 0 0.72333 1 26610 26610 0 0 1 5147000 + 52675 23045 32781 32798 60626 60626 0.18954615464417657 VVRKRVLL 8 Unmodified _VVRKRVLL_ 0 0 0 REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 491.847836 981.681119 0.48629 0.00023918 0.11355 5.585E-05 0.59984 0.00029503 491.84775307086835 108.33 0.21336 111.87 111.7 111.91 3.5333 -0.15252 -0.00021307 NaN 0 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1538700 + 52676 23045 32781 32798 0.18954615464417657 VVRKRVLL 8 Unmodified _VVRKRVLL_ 0 0 0 REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF REV__ENST00000564147.1_1_16:68270758-68271348:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 491.847836 981.681119 0.26769 0.00013166 0.24801 0.00012198 0.5157 0.00025364 491.8477030521775 108.36 0.34838 112.03 111.79 112.14 3.6746 0.011745 -8.0805E-05 NaN 0 76 40 3 NaN NaN NaN NaN 0 NaN NaN 0 4614900 + 52677 23045 32781 32798 0.18954615464417657 VVRLIHLRLK 10 Unmodified _VVRLIHLRLK_ 0 0 0 nc|ENSG00000140995|Q6ZN54-2|DEF8;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 nc|ENSG00000140995|Q6ZN54-2|DEF8 MSMS UPN46_class_I_Rep_3 1 623.9273071289062 2 623.927149 1245.83975 NaN NaN NaN NaN NaN NaN NaN 29.595 1 29.595 29.095 30.095 0 0 0 0 0.53105 1 4707 4707 0 0 1 52678 3201 32782 32799 60627 60627 0.22665909372676651 VVRNKLDK 8 Unmodified _VVRNKLDK_ 0 0 0 REV__nc|ENSG00000197170|O00232-2|PSMD12 REV__nc|ENSG00000197170|O00232-2|PSMD12 MSMS UPN48_class_I_Rep_2 6 486.30322265625 2 486.303458 970.592364 NaN NaN NaN NaN NaN NaN NaN 78.771 1 82.404 81.904 82.904 3.6331 0 0 0 0.40643 1 18690 18690 2.0598 0 1 + 52679 21070 32783 32800 60628 60628 0.10589155434070108 VVRPCLKKGK 10 Unmodified _VVRPCLKKGK_ 0 0 0 REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|34|1|sense REV__L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|34|1|sense MSMS UPN47_class_I_Rep_1 2 564.359375 2 564.357711 1126.70087 NaN NaN NaN NaN NaN NaN NaN 86.796 1 90.433 89.933 90.933 3.6372 0 0 0 0.53105 1 21685 21685 0.40072 0.40072 1 + 52680 24897 32784 32801 60629 60629 0.14258623412865745 VVRPLIAL 8 Unmodified _VVRPLIAL_ 0 0 0 REV__AluJo_dup76924|chr22:23650171-23650473:-|2.0196832948089964|0.2572516046953359|2.97|151.0|23|3|anti-sense REV__AluJo_dup76924|chr22:23650171-23650473:-|2.0196832948089964|0.2572516046953359|2.97|151.0|23|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 440.798828125 2 440.802563 879.590573 0.091034 4.0128E-05 -4.2723 -0.0018832 -4.1813 -0.0018431 440.7991688339498 82.631 0.16634 86.17 86.085 86.251 3.5386 27 17 2 0 0 0 0.82752 1 20644 20644 0 0 1 54396 + 52681 17024 32785 32802 60630 60630 0.14596146416113243 VVRPVAKT 8 Unmodified _VVRPVAKT_ 0 0 0 ENSG00000198908|ENST00000457056|GPRASP3 ENSG00000198908|ENST00000457056|GPRASP3 ENSG00000198908|ENST00000457056|GPRASP3 MULTI-SECPEP UPN47_class_I_Rep_3 4 434.7796630859375 2 435.281995 868.549437 -0.52925 -0.00023037 -0.62163 -0.00027058 -1.1509 -0.00050096 435.2817002645342 46.95 0.2117 50.193 50.006 50.218 3.2439 18 13 2 0 0 0 0.72333 1 10095 10095 0.69038 0 1 56050 52682 5481 32786 32803 60631 60631 0.10990385376646827 VVRQLKQI 8 Unmodified _VVRQLKQI_ 0 0 0 REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP REV__nc|ENSG00000178104|Q5VU43-6|PDE4DIP MSMS UPN48_class_I_Rep_1 5 492.3214416503906 2 492.321651 982.62875 NaN NaN NaN NaN NaN NaN NaN 115.21 1 118.84 118.34 119.34 3.6282 0 0 0 0.40746 1 28023 28023 0.69038 0 1 + 52683 20638 32787 32804 60632 60632 0.13674032330777663 VVRQVAPATEK 11 Unmodified _VVRQVAPATEK_ 0 0 0 REV__ENSG00000101040.19,ZMYND8,chr20,-,I20.1,47239139,47246007|24|14.7|5|intron REV__ENSG00000101040.19,ZMYND8,chr20,-,I20.1,47239139,47246007|24|14.7|5|intron MSMS UPN48_class_I_Rep_1 5 599.3515625 2 599.351137 1196.68772 NaN NaN NaN NaN NaN NaN NaN 15.449 1 18.967 18.467 19.467 3.5184 0 0 0 0.38417 1 612 612 0 0 1 + 52684 18143 32788 32805 60633 60633 0.09724463834436392 VVRRGAPR 8 Unmodified _VVRRGAPR_ 0 0 0 ENST00000544456.5_2_12:7342308-7342639:+|nuORF ENST00000544456.5_2_12:7342308-7342639:+|nuORF ENST00000544456.5_2_12:7342308-7342639:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 456.3009948730469 2 455.78831 909.562067 0.091472 4.1692E-05 -3.1707 -0.0014452 -3.0792 -0.0014035 455.78732346435424 42.176 0.031448 45.818 45.791 45.822 3.6415 4 2 2 0 0 0 0.82752 1 7699 7699 2.3027 0 1 23780 52685 7367 32789 32806 60634 60634 0.10366841559550721 VVRRGAPR 8 Unmodified _VVRRGAPR_ 0 0 0 ENST00000544456.5_2_12:7342308-7342639:+|nuORF ENST00000544456.5_2_12:7342308-7342639:+|nuORF ENST00000544456.5_2_12:7342308-7342639:+|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 455.78831 909.562067 0.16735 7.6275E-05 -7.392 -0.0033692 -7.2247 -0.0032929 455.78531459498424 45.882 0.13884 45.882 45.843 45.981 0 0.032305 -0.0008724 NaN 2.3027 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 86784 52686 7367 32789 32806 0.10366841559550721 VVRRGATAL 9 Unmodified _VVRRGATAL_ 0 0 0 ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron MSMS UPN47_class_I_Rep_1 2 471.794921875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 25.782 1 29.544 29.044 30.044 3.7624 0 0 0 0.4029 1 3592 3592 0 0 1 52687 2301 32790 32807 60635 60635 0.10392288636876401 VVRRGATAL 9 Unmodified _VVRRGATAL_ 0 0 0 ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron MSMS UPN47_class_I_Rep_2 3 471.7951354980469 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 27.958 1 31.457 30.957 31.957 3.4986 0 0 0 0.4029 1 4272 4272 0 0 1 52688 2301 32790 32807 60636 60636 0.10392288636876401 VVRRGATAL 9 Unmodified _VVRRGATAL_ 0 0 0 ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron ENSG00000119866.22,BCL11A,chr2,-,I9.1,60508825,60522080|90|9.39|1|intron MSMS UPN48_class_I_Rep_2 6 471.7953186035156 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 117.25 1 120.91 120.41 121.41 3.6607 0 0 0 0.4029 1 28096 28096 0 0 1 52689 2301 32790 32807 60637 60637 0.10392288636876401 VVRRLAVR 8 Unmodified _VVRRLAVR_ 0 0 0 ENST00000508497.5_1_4:17579055-17583440:+|nuORF;ENST00000512397.1_1_4:17579088-17584030:+|nuORF;ENSG00000002549|ENST00000226299|LAP3 ENST00000508497.5_1_4:17579055-17583440:+|nuORF ENST00000508497.5_1_4:17579055-17583440:+|nuORF MSMS UPN48_class_I_Rep_2 6 484.82550048828125 2 484.827435 967.640317 NaN NaN NaN NaN NaN NaN NaN 112.42 1 116.08 115.58 116.58 3.6648 0 0 0 0.40746 1 26781 26781 0.69038 0 1 52690 672 32791 32808 60638 60638 0.15520274144785162 VVRRRMYIL 9 Unmodified _VVRRRMYIL_ 0 0 0 L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|28|3|anti-sense L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|28|3|anti-sense L1P3_dup2463|chr10:74455998-74456392:+|1.1702511425535174|0.0087086252199222|7.07|151.0|28|3|anti-sense MSMS UPN48_class_I_Rep_2 6 603.3671264648438 2 603.36861 1204.72267 NaN NaN NaN NaN NaN NaN NaN 73.019 1 76.583 76.083 77.083 3.5645 0 0 0 0.4007 1 17125 17125 0.52476 0.12405 1 52691 13534 32792 32809 60639 60639 0.12849428161416654 VVRRSQIL 8 Unmodified _VVRRSQIL_ 0 0 0 REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.81243896484375 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 67.092 1 70.453 69.953 70.953 3.3611 0 0 0 0.40738 1 16113 16113 0.79363 0 1 + 52692 30546 32793 32810 60640 60640 0.12232861670997863 VVRRSQIL 8 Unmodified _VVRRSQIL_ 0 0 0 REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense MSMS UPN47_class_I_Rep_2 3 485.8117370605469 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 69.147 1 72.423 71.923 72.923 3.2761 0 0 0 0.40738 1 16775 16775 0.79363 0 1 + 52693 30546 32793 32810 60641 60641 0.12232861670997863 VVRRSQIL 8 Unmodified _VVRRSQIL_ 0 0 0 REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.8119201660156 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 67.742 1 70.934 70.434 71.434 3.1914 0 0 0 0.40738 1 16420 16420 0.79363 0 1 + 52694 30546 32793 32810 60642 60642 0.12232861670997863 VVRRSQIL 8 Unmodified _VVRRSQIL_ 0 0 0 REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense REV__L1PB3_dup156|chr1:198215594-198219195:+|3.130265687580703|0.0568215791120708|5.78|151.0|201|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.811767578125 2 485.811451 969.608348 NaN NaN NaN NaN NaN NaN NaN 68.764 1 72.273 71.773 72.773 3.5094 0 0 0 0.40738 1 15789 15789 0.79363 0 1 + 52695 30546 32793 32810 60643 60643 0.12232861670997863 VVRVGMLV 8 Unmodified _VVRVGMLV_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.7745361328125 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 82.71 1 86.292 85.792 86.792 3.5826 0 0 0 0.40738 1 19757 19757 0.79363 0 1 52696 13910 32794 32811 60644 60644 0.09043927130301199 VVRVGMLV 8 Unmodified _VVRVGMLV_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.7747497558594 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 82.889 1 86.476 85.976 86.976 3.5871 0 0 0 0.40738 1 19809 19809 0.79363 0 1 52697 13910 32794 32811 60645 60645 0.09043927130301199 VVRVGMLV 8 Unmodified _VVRVGMLV_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.7746276855469 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 92.952 1 96.576 96.076 97.076 3.624 0 0 0 0.40738 1 22335 22335 0.79363 0 1 52698 13910 32794 32811 60646 60646 0.09043927130301199 VVRVGMLV 8 Unmodified _VVRVGMLV_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|203|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.774658203125 2 436.772948 871.531344 NaN NaN NaN NaN NaN NaN NaN 93.813 1 97.434 96.934 97.934 3.6208 0 0 0 0.40738 1 22558 22558 0.79363 0 1 52699 13910 32794 32811 60647 60647 0.09043927130301199 VVRVRGAW 8 Unmodified _VVRVRGAW_ 0 0 0 REV__ENST00000374837.7_1_20:33147851-33148046:+|nuORF REV__ENST00000374837.7_1_20:33147851-33148046:+|nuORF MSMS UPN48_class_I_Rep_2 6 471.7955627441406 2 471.785236 941.555919 NaN NaN NaN NaN NaN NaN NaN 112.74 1 116.41 115.91 116.91 3.6648 0 0 0 0.40604 1 26875 26875 2.5775 1.7838 1 + 52700 22005 32795 32812 60648 60648 0.08280323328028771 VVRVRPWP 8 Unmodified _VVRVRPWP_ 0 0 0 REV__ENSG00000099338|ENST00000409235|CATSPERG REV__ENSG00000099338|ENST00000409235|CATSPERG MSMS UPN46_class_I_Rep_3 1 504.8086242675781 2 504.808711 1007.60287 NaN NaN NaN NaN NaN NaN NaN 34.634 1 34.634 34.134 35.134 0 0 0 0 0.40581 1 6208 6208 2.8892 0 1 + 52701 18067 32796 32813 60649 60649 0.0993718287916181 VVRVYLFY 8 Unmodified _VVRVYLFY_ 0 0 0 REV__MLT1H1_dup2501|chr11:107323541-107324056:+|1.178431107529302|0.0535523786508575|4.46|150.0|35|3|anti-sense REV__MLT1H1_dup2501|chr11:107323541-107324056:+|1.178431107529302|0.0535523786508575|4.46|150.0|35|3|anti-sense MSMS UPN47_class_I_Rep_3 4 529.8043823242188 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 26.493 1 29.841 29.341 30.341 3.3478 0 0 0 0.40738 1 3883 3883 0.79363 0.10326 1 + 52702 31756 32797 32814 60650 60650 0.0695582520793323 VVRYYHFVE 9 Unmodified _VVRYYHFVE_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|281|2|anti-sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|281|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.3150024414062 2 606.314023 1210.61349 0.48459 0.00029381 0.10534 6.3872E-05 0.58994 0.00035769 606.3137991056115 55.654 0.72986 59.162 58.785 59.515 3.5082 101 48 3 0 0 0 0.46434 1 11836 11836 4.3292 0 1 208120 + 52703 29224 32798 32815 60651 60651 0.0166112074296052 VVRYYHFVE 9 Unmodified _VVRYYHFVE_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|281|2|anti-sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|281|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.313720703125 2 606.314023 1210.61349 0.43451 0.00026345 0.39662 0.00024048 0.83113 0.00050393 606.3137977516633 55.513 0.76881 59.069 58.743 59.512 3.5554 89 49 3 0 0 0 0.46869 1 11739 11739 3.9444 0.94915 1 216120 + 52704 29224 32798 32815 60652 60652 0.0166112074296052 VVSELNFDY 9 Unmodified _VVSELNFDY_ 0 0 0 L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|150|3|anti-sense L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|150|3|anti-sense L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|150|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 543.2623901367188 2 543.261122 1084.50769 0.43766 0.00023776 0.096706 5.2536E-05 0.53436 0.0002903 543.2611692124472 73.093 0.39246 76.32 76.165 76.557 3.2271 52 32 2 0 0 0 0.41259 1 18068 18068 7.2892 0 1 71955 52705 11832 32799 32816 60653 60653 -0.03118259893199138 VVSELNFDY 9 Unmodified _VVSELNFDY_ 0 0 0 L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|150|3|anti-sense L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|150|3|anti-sense L1MCa_dup5748|chr13:46029728-46032053:+|1.4689722158391072|0.0748627007837383|4.29|151.0|150|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 543.261122 1084.50769 0.40042 0.00021753 -0.031594 -1.7164E-05 0.36883 0.00020037 543.2610797935102 73.047 0.49596 76.344 76.192 76.688 3.2971 0.011884 -8.0564E-05 NaN 7.2892 53 38 2 NaN NaN NaN NaN 0 NaN NaN 0 60365 52706 11832 32799 32816 -0.03118259893199138 VVSFFNFHKS 10 Unmodified _VVSFFNFHKS_ 0 0 0 Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|140|2|anti-sense Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|140|2|anti-sense Tigger2_dup332|chr2:63949362-63951862:-|4.488992349474467|0.2214750408869727|4.34|151.0|140|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.3146362304688 2 606.314023 1210.61349 0.44937 0.00027246 -0.1783 -0.00010811 0.27107 0.00016435 606.3138010397399 56.282 0.65878 59.825 59.499 60.158 3.5427 93 58 2 0 0 0 0.46161 1 11983 11983 14.838 0.93222 1 168770 52707 33316 32800 32817 60654 60654 0.016611207429377828 VVSILKVKGLN 11 Unmodified _VVSILKVKGLN_ 0 0 0 REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF MSMS UPN46_class_I_Rep_3 1 585.708251953125 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 113.25 1 113.25 112.75 113.75 0 0 0 0 0.38417 1 27972 27972 0 0 1 + 52708 21662 32801 32818 60655 60655 0.17671699396396434 VVSILKVKGLN 11 Unmodified _VVSILKVKGLN_ 0 0 0 REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF MSMS UPN46_class_I_Rep_3 1 585.3843994140625 2 585.384448 1168.75434 NaN NaN NaN NaN NaN NaN NaN 117.09 1 117.09 116.59 117.59 0 0 0 0 0.38417 1 29011 29011 0 0 1 + 52709 21662 32801 32818 60656 60656 0.17671699396396434 VVSITSISLLI 11 Unmodified _VVSITSISLLI_ 0 0 0 REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|102|2|anti-sense REV__Tigger1_dup12056|chr22:46987465-46989758:-|1.7544027614499969|0.0421779502315461|5.38|151.0|102|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.265625 2 572.863015 1143.71148 NaN NaN NaN NaN NaN NaN NaN 13.514 1 17.027 16.527 17.527 3.5133 0 0 0 0.38417 1 255 255 0 0 1 + 52710 32371 32802 32819 60657 60657 0.14536884548306261 VVSKVRRKL 9 Unmodified _VVSKVRRKL_ 0 0 0 REV__ENSG00000226761|ENST00000533467|TAS2R46 REV__ENSG00000226761|ENST00000533467|TAS2R46 MSMS UPN46_class_I_Rep_3 1 542.868408203125 2 542.8693 1083.72405 NaN NaN NaN NaN NaN NaN NaN 36.551 1 36.551 36.051 37.051 0 0 0 0 0.4007 1 6786 6786 0.52476 0 1 + 52711 21294 32803 32820 60658 60658 0.18553385521840937 VVSLFLQHN 9 Unmodified _VVSLFLQHN_ 0 0 0 nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1 nc|ENSG00000144749|Q96JA1-2|LRIG1 nc|ENSG00000144749|Q96JA1-2|LRIG1 MSMS UPN47_class_I_Rep_1 2 528.7962646484375 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 31.169 1 34.898 34.398 35.398 3.7293 0 0 0 0.39518 1 5192 5192 1.8442 0 1 52712 3373 32804 32821 60659 60659 0.0508144919717779 VVSLHIFF 8 Unmodified _VVSLHIFF_ 0 0 0 REV__L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|69|1|anti-sense REV__L1MA5A_dup2274|chr10:74620022-74621664:-|1.0298361206236557|0.0287621532851843|5.16|150.0|69|1|anti-sense MSMS UPN47_class_I_Rep_3 4 481.2798767089844 2 481.278921 960.543289 NaN NaN NaN NaN NaN NaN NaN 24.719 1 28.07 27.57 28.57 3.3509 0 0 0 0.40738 1 3361 3361 0.79363 0 1 + 52713 25414 32805 32822 60660 60660 0.06143867145146942 VVSLIILGV 9 Unmodified _VVSLIILGV_ 0 0 0 REV__ENSG00000115170|ENST00000434821|ACVR1 REV__ENSG00000115170|ENST00000434821|ACVR1 MSMS UPN48_class_I_Rep_2 6 456.8102722167969 2 456.810054 911.605554 NaN NaN NaN NaN NaN NaN NaN 20.417 1 24.065 23.565 24.565 3.648 0 0 0 0.4029 1 1750 1750 0 0 1 + 52714 18545 32806 32823 60661 60661 0.14621593493484397 VVSLLGVPK 9 Unmodified _VVSLLGVPK_ 0 0 0 REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|4|1|sense REV__LTR12C_dup2102|chr12:82728588-82730158:+|2.5137567018829765|0.0251149686989546|6.65|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 456.3007507324219 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 40.205 1 43.856 43.356 44.356 3.6509 0 0 0 0.39518 1 7122 7122 1.8442 0 1 + 52715 30811 32807 32824 60662 60662 0.1262842283366581 VVSLLSESYN 10 Unmodified _VVSLLSESYN_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-SECPEP UPN47_class_I_Rep_2 3 555.288818359375 2 555.787504 1109.56045 0.44775 0.00024886 2.4466 0.0013598 2.8944 0.0016087 556.2897338370979 74.311 0.04007 77.616 77.587 77.627 3.3048 5 4 2 0 0 0 0.84575 1 18300 18300 3.5965 1.7523 1 33388 52716 4644 32808 32825 60663 60663 0.010056981696379808 VVSLLSESYN 10 Unmodified _VVSLLSESYN_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 555.787504 1109.56045 0.45405 0.00025235 1.1959 0.00066468 1.65 0.00091703 556.288775129151 74.178 0.04229 77.415 77.385 77.428 3.2363 -0.10058 -0.00077259 NaN 3.5965 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 72963 52717 4644 32808 32825 0.010056981696379808 VVSLSTVQL 9 Unmodified _VVSLSTVQL_ 0 0 0 Tigger7_dup105|chr1:93218812-93219761:-|2.587211219154761|0.2186491245323614|3.56|151.0|10|2|sense Tigger7_dup105|chr1:93218812-93219761:-|2.587211219154761|0.2186491245323614|3.56|151.0|10|2|sense Tigger7_dup105|chr1:93218812-93219761:-|2.587211219154761|0.2186491245323614|3.56|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.7856140136719 2 473.2844 944.554247 0.23579 0.00011159 -0.78104 -0.00036966 -0.54526 -0.00025806 473.28405926860364 88.573 0.076584 92.025 91.987 92.063 3.4525 12 10 2 0 0 0 0.42249 1 22022 22022 6.7232 0 1 39109 52718 33452 32809 32826 60664 60664 0.07975224728750163 VVSLSTVQL 9 Unmodified _VVSLSTVQL_ 0 0 0 Tigger7_dup105|chr1:93218812-93219761:-|2.587211219154761|0.2186491245323614|3.56|151.0|10|2|sense Tigger7_dup105|chr1:93218812-93219761:-|2.587211219154761|0.2186491245323614|3.56|151.0|10|2|sense Tigger7_dup105|chr1:93218812-93219761:-|2.587211219154761|0.2186491245323614|3.56|151.0|10|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 473.2844 944.554247 0.19702 9.3246E-05 -0.36878 -0.00017454 -0.17176 -8.1292E-05 473.28435560689354 88.616 0.10567 92.272 92.212 92.318 3.6563 0.12354 0.00030125 NaN 6.7232 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 27965 52719 33452 32809 32826 0.07975224728750163 VVSPFHLH 8 Unmodified _VVSPFHLH_ 0 0 0 REV__ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|10|intron REV__ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|10|intron MSMS UPN46_class_I_Rep_3 1 468.4271545410156 2 468.25852 934.502486 NaN NaN NaN NaN NaN NaN NaN 71.293 1 71.293 70.793 71.793 0 0 0 0 0.40738 1 16416 16416 0.79363 0 1 + 52720 18451 32810 32827 60665 60665 0.032615258255077606 VVSRLKVH 8 Unmodified _VVSRLKVH_ 0 0 0 REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2 REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2 MSMS UPN48_class_I_Rep_2 6 469.30035400390625 2 469.300719 936.586885 NaN NaN NaN NaN NaN NaN NaN 107.63 1 111.31 110.81 111.81 3.6783 0 0 0 0.40604 1 25443 25443 2.5775 0 1 + 52721 18370 32811 32828 60666 60666 0.11605476642262147 VVSRRNRRNL 10 Unmodified _VVSRRNRRNL_ 0 0 0 REV__L1MA8_dup1877|chr3:128775766-128776268:-|1.63266932514134|0.0141639922159092|6.85|151.0|12|2|sense REV__L1MA8_dup1877|chr3:128775766-128776268:-|1.63266932514134|0.0141639922159092|6.85|151.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 634.9678344726562 2 635.384168 1268.75378 NaN NaN NaN NaN NaN NaN NaN 78.931 1 78.931 78.431 79.431 0 0 0 0 0.53105 1 18514 18514 1.4819 0.15237 1 + 52722 25537 32812 32829 60667 60667 0.13015717519897407 VVSSVGRGLIE 11 Unmodified _VVSSVGRGLIE_ 0 0 0 REV__ENST00000467726.1_1_7:56154661-56156634:-|nuORF REV__ENST00000467726.1_1_7:56154661-56156634:-|nuORF MSMS UPN47_class_I_Rep_1 2 558.3264770507812 2 558.324588 1114.63462 NaN NaN NaN NaN NaN NaN NaN 91.072 1 94.777 94.277 95.277 3.7053 0 0 0 0.38417 1 22740 22740 0 0 1 + 52723 20084 32813 32830 60668 60668 0.08189086051834238 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.7878723144531 2 458.787976 915.561398 0.209 9.5888E-05 -0.42924 -0.00019693 -0.22024 -0.00010104 458.7877271196988 87.739 0.20693 87.739 87.693 87.899 0 67 23 3 0 0 0 0.82752 1 21041 21041 11.64 0 1 6054200 + 52724 17250 32814 32831 60669 60669 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 458.78790283203125 2 458.787976 915.561398 0.20903 9.5899E-05 -0.054333 -2.4928E-05 0.15469 7.0971E-05 458.7878761198583 87.979 0.24142 87.979 87.892 88.134 0 50 22 3 0 0 0 0.82752 1 21109 21109 2.5775 0 1 749400 + 52725 17250 32814 32831 60670 60670 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 458.7882385253906 2 458.787976 915.561398 NaN NaN NaN NaN NaN NaN NaN 88.668 1 88.668 88.168 89.168 0 0 0 0 0.40604 1 21305 21305 2.5775 0 1 + 52726 17250 32814 32831 60671 60671 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 458.7874755859375 2 458.787976 915.561398 NaN NaN NaN NaN NaN NaN NaN 90.255 1 90.255 89.755 90.755 0 0 0 0 0.40746 1 21758 21758 0.69038 0 1 + 52727 17250 32814 32831 60672 60672 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 458.7879638671875 2 458.787976 915.561398 NaN NaN NaN NaN NaN NaN NaN 107.11 1 107.11 106.61 107.61 0 0 0 0 0.40604 1 26131 26131 2.5775 0 1 + 52728 17250 32814 32831 60673 60673 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 458.7878723144531 2 458.787976 915.561398 0.033533 1.5384E-05 0.0686 3.1473E-05 0.10213 4.6857E-05 458.7878206180907 84.162 1.3167 87.585 86.864 88.18 3.4232 428 171 4 0 0 0 0.82752 2 20958 20958;20988 11.64 0 1 2859400 + 52729 17250 32814 32831 60674;60675 60674 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 458.7878112792969 2 458.787976 915.561398 -0.10967 -5.0314E-05 0.24503 0.00011242 0.13536 6.2103E-05 458.78791173077957 84.182 1.3246 87.544 86.82 88.144 3.3615 413 159 4 0 0 0 0.82752 1 21134 21134 11.64 0 1 3449500 + 52730 17250 32814 32831 60676 60676 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 458.7872619628906 2 458.787976 915.561398 NaN NaN NaN NaN NaN NaN NaN 108.26 1 111.89 111.39 112.39 3.6313 0 0 0 0.40604 1 26182 26182 2.5775 0 1 + 52731 17250 32814 32831 60677 60677 0.10024002119848774 VVTAKSRR 8 Unmodified _VVTAKSRR_ 0 0 0 REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense REV__Arthur1B_dup930|chr6:38159535-38160665:+|1.0829572964669|0.2205355427775907|2.3|151.0|5|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 458.787976 915.561398 0.20903 9.5899E-05 -0.054333 -2.4928E-05 0.15469 7.0971E-05 458.7878761198583 87.979 0.24142 87.979 87.892 88.134 0 -0.028053 -0.00017009 NaN 2.5775 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 749400 + 52732 17250 32814 32831 0.10024002119848774 VVTALEVVL 9 Unmodified _VVTALEVVL_ 0 0 0 REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF MSMS UPN47_class_I_Rep_3 4 471.7957763671875 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 74.236 1 77.472 76.972 77.972 3.2363 0 0 0 0.381 1 18365 18365 5.2307 2.3415 1 + 52733 22791 32815 32832 60678 60678 0.10660699251184269 VVTALEVVL 9 Unmodified _VVTALEVVL_ 0 0 0 REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 471.7972412109375 2 471.797143 941.579734 0.13268 6.26E-05 -0.63597 -0.00030005 -0.50329 -0.00023745 471.7967166813857 69.822 1.0491 73.281 72.772 73.821 3.4598 166 80 3 0 0 0 0.35081 2 16310 16310;16342 10.824 0 1 373950 + 52734 22791 32815 32832 60679;60680 60679 0.10660699251184269 VVTALEVVL 9 Unmodified _VVTALEVVL_ 0 0 0 REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF REV__ENST00000522245.1_1_8:27311571-27312006:+|nuORF MSMS UPN48_class_I_Rep_1 5 471.7791442871094 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 74.354 1 77.844 77.344 78.344 3.49 0 0 0 0.3264 1 17566 17566 9.3474 0.75416 1 + 52735 22791 32815 32832 60681 60681 0.10660699251184269 VVTASVVSSL 10 Unmodified _VVTASVVSSL_ 0 0 0 REV__ENSG00000145217|ENST00000398516|SLC26A1 REV__ENSG00000145217|ENST00000398516|SLC26A1 MSMS UPN46_class_I_Rep_3 1 481.2835388183594 2 481.281857 960.549162 NaN NaN NaN NaN NaN NaN NaN 97.199 1 97.199 96.699 97.699 0 0 0 0 0.53105 1 23646 23646 3.5965 0 1 + 52736 19507 32816 32833 60682 60682 0.06730920866152701 VVTAVINI 8 Unmodified _VVTAVINI_ 0 0 0 REV__ENSG00000166535|ENST00000299698|A2ML1 REV__ENSG00000166535|ENST00000299698|A2ML1 MSMS UPN47_class_I_Rep_2 3 414.76171875 2 414.763104 827.511654 NaN NaN NaN NaN NaN NaN NaN 81.696 1 85.08 84.58 85.58 3.3839 0 0 0 0.40746 1 20354 20354 0.69038 0 1 + 52737 20180 32817 32834 60683 60683 0.09099874391165486 VVTEGLLNTY 10 Unmodified _VVTEGLLNTY_ 0 0 0 ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENSG00000123213|ENST00000380985|NLN ENST00000506539.5_1_5:65018131-65088776:+|nuORF ENST00000506539.5_1_5:65018131-65088776:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 555.27734375 2 554.797872 1107.58119 0.12712 7.0524E-05 -0.60223 -0.00033411 -0.47511 -0.00026359 554.7975430581463 45.386 0.53464 49.086 48.708 49.242 3.6999 47 31 2 0 0 0 0.505 1 9461 9461 11.495 1.4208 1 54294 52738 2413 32818 32835 60684 60684 0.0317028854929049 VVTHPIDK 8 Unmodified _VVTHPIDK_ 0 0 0 ENSG00000181903|ENST00000314259|OR4C6 ENSG00000181903|ENST00000314259|OR4C6 ENSG00000181903|ENST00000314259|OR4C6 MSMS UPN47_class_I_Rep_2 3 454.750732421875 2 454.763635 907.512717 NaN NaN NaN NaN NaN NaN NaN 45.944 1 49.297 48.797 49.797 3.3534 0 0 0 0.40643 1 9729 9729 2.0598 0 1 52739 4930 32819 32836 60685 60685 0.05526088760075254 VVTKIKKLESL 11 Unmodified _VVTKIKKLESL_ 0 0 0 REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|1|1|sense REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 629.410888671875 2 629.410663 1256.80677 NaN NaN NaN NaN NaN NaN NaN 115.06 1 115.06 114.56 115.56 0 0 0 0 0.38417 1 28457 28457 0 0 1 + 52740 27456 32820 32837 60686 60686 0.18864237739353484 VVTKIKKLESL 11 Unmodified _VVTKIKKLESL_ 0 0 0 REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|1|1|sense REV__L1MD2_dup9659|chr18:20955293-20956058:+|1.721788213162628|0.4377897924322068|1.98|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 629.7426147460938 2 629.410663 1256.80677 NaN NaN NaN NaN NaN NaN NaN 113.13 1 116.64 116.14 117.14 3.5098 0 0 0 0.38417 1 27742 27742 0 0 1 + 52741 27456 32820 32837 60687 60687 0.18864237739353484 VVTKTVEKI 9 Unmodified _VVTKTVEKI_ 0 0 0 nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM nc|ENSG00000104722|P07197-2|NEFM nc|ENSG00000104722|P07197-2|NEFM MULTI-MSMS UPN48_class_I_Rep_3 7 508.8211975097656 2 508.82115 1015.62775 0.27597 0.00014042 -0.44655 -0.00022721 -0.17058 -8.6794E-05 508.8210044252575 61.157 0.052475 64.67 64.646 64.699 3.5129 6 4 2 0 0 0 0.47493 1 13496 13496 3.2813 0 1 68330 52742 1697 32821 32838 60688 60688 0.12055773171221063 VVTNRFDQLF 10 Unmodified _VVTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-SECPEP UPN47_class_I_Rep_1 2 619.28857421875 2 619.830037 1237.64552 0.44168 0.00027377 -0.43405 -0.00026904 0.0076305 4.7296E-06 619.8297311114472 61.669 0.68437 65.037 64.737 65.421 3.3681 105 49 3 0 0 0 0.84575 1 14436 14436 16.566 16.566 1 217410 52743 3267 32822 32839 60689 60689 0.03620488426076918 VVTNRFDQLF 10 Unmodified _VVTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 619.2885131835938 2 619.830037 1237.64552 0.45008 0.00027897 -0.36846 -0.00022838 0.081625 5.0593E-05 619.8296548827751 61.993 0.74246 65.252 64.871 65.613 3.2594 99 52 2 0 0 0 0.84575 1 14590 14590 19.626 7.3853 1 227470 52744 3267 32822 32839 60690 60690 0.03620488426076918 VVTNRFDQLF 10 Unmodified _VVTNRFDQLF_ 0 0 0 nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 nc|ENSG00000142864|Q8NC51-4|SERBP1 MULTI-SECPEP UPN47_class_I_Rep_3 4 619.2884521484375 2 619.830037 1237.64552 0.40454 0.00025074 -0.39902 -0.00024732 0.0055199 3.4214E-06 619.829693243153 62.097 0.92975 65.264 64.864 65.794 3.1667 94 62 2 0 0 0 0.84575 1 14657 14657 19.626 7.3853 1 184930 52745 3267 32822 32839 60691 60691 0.03620488426076918 VVTPLASISRT 11 Unmodified _VVTPLASISRT_ 0 0 0 REV__nc|ENSG00000104450|Q07617-2|SPAG1 REV__nc|ENSG00000104450|Q07617-2|SPAG1 MSMS UPN47_class_I_Rep_3 4 572.3399047851562 2 572.340238 1142.66592 NaN NaN NaN NaN NaN NaN NaN 93.278 1 96.683 96.183 97.183 3.4052 0 0 0 0.38417 1 23259 23259 0 0 1 + 52746 18258 32823 32840 60692 60692 0.10029659085876119 VVTPRRAA 8 Unmodified _VVTPRRAA_ 0 0 0 ENSG00000163485|ENST00000337894|ADORA1 ENSG00000163485|ENST00000337894|ADORA1 ENSG00000163485|ENST00000337894|ADORA1 MULTI-MSMS UPN46_class_I_Rep_3 1 435.2691345214844 2 435.269419 868.524284 0.14693 6.3955E-05 -0.31821 -0.00013851 -0.17127 -7.455E-05 435.269098781005 93.656 0.47271 93.656 93.283 93.756 0 59 47 2 0 0 0 0.82752 1 22687 22687 0.69038 0 1 331330 52747 4008 32824 32841 60693 60693 0.08476330574080748 VVTPRRAA 8 Unmodified _VVTPRRAA_ 0 0 0 ENSG00000163485|ENST00000337894|ADORA1 ENSG00000163485|ENST00000337894|ADORA1 ENSG00000163485|ENST00000337894|ADORA1 MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.269419 868.524284 -0.35382 -0.00015401 0.052727 2.295E-05 -0.30109 -0.00013106 435.26924424548076 90.215 0.062668 93.612 93.571 93.634 3.3976 0.062555 0.00026153 NaN 0.69038 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 39322 52748 4008 32824 32841 0.08476330574080748 VVTPRRAT 8 Unmodified _VVTPRRAT_ 0 0 0 REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 450.2745666503906 2 450.274701 898.534849 0.18593 8.3721E-05 -0.62265 -0.00028036 -0.43672 -0.00019664 450.2745070027881 87.59 0.63702 87.59 87.075 87.712 0 230 57 5 0 0 0 0.82752 1 20870 20870 0.6015 0 1 18888000 + 52749 23168 32825 32842 60694 60694 0.08152313228504227 VVTPRRAT 8 Unmodified _VVTPRRAT_ 0 0 0 REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 450.274658203125 2 450.274701 898.534849 0.18588 8.3699E-05 -0.28894 -0.0001301 -0.10306 -4.6404E-05 450.2745046808307 87.982 0.16746 87.982 87.892 88.06 0 55 17 4 0 0 0 0.82752 1 21117 21117 4.756 0 1 1755800 + 52750 23168 32825 32842 60695 60695 0.08152313228504227 VVTPRRAT 8 Unmodified _VVTPRRAT_ 0 0 0 REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 450.2745666503906 2 450.274701 898.534849 0.18597 8.3738E-05 -0.017295 -7.7876E-06 0.16868 7.5951E-05 450.27463080113625 88.246 0.078888 88.246 88.22 88.299 0 18 7 4 0 0 0 0.82752 1 21188 21188 2.3027 0 1 498440 + 52751 23168 32825 32842 60696 60696 0.08152313228504227 VVTPRRAT 8 Unmodified _VVTPRRAT_ 0 0 0 REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 450.274658203125 2 450.274701 898.534849 0.18588 8.3699E-05 -0.28894 -0.0001301 -0.10306 -4.6404E-05 450.2745046808307 87.982 0.16746 87.982 87.892 88.06 0 55 17 4 0 0 0 0.72333 1 21084 21084 4.756 0 1 1755800 + 52752 23168 32825 32842 60697 60697 0.08152313228504227 VVTPTTLLTS 10 Unmodified _VVTPTTLLTS_ 0 0 0 REV__ENSG00000198670|ENST00000316300|LPA REV__ENSG00000198670|ENST00000316300|LPA MSMS UPN46_class_I_Rep_3 1 516.3023681640625 2 516.30279 1030.59103 NaN NaN NaN NaN NaN NaN NaN 22.074 1 22.074 21.574 22.574 0 0 0 0 0.53105 1 2567 2567 3.5965 0 1 + 52753 21137 32826 32843 60698 60698 0.07695476554658853 VVTRETEIL 9 Unmodified _VVTRETEIL_ 0 0 0 REV__L1MA7_dup6636|chr12:132089123-132090180:-|2.653787729861591|0.469436982177397|2.5|151.0|23|2|sense REV__L1MA7_dup6636|chr12:132089123-132090180:-|2.653787729861591|0.469436982177397|2.5|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.3046875 2 530.305864 1058.59717 0.39294 0.00020838 -0.90573 -0.00048032 -0.5128 -0.00027194 530.305024612925 29.182 0.5306 32.732 32.49 33.021 3.5499 89 55 2 0 0 0 0.47493 1 3961 3961 3.2813 0 1 138040 + 52754 25520 32827 32844 60699 60699 0.07021994786191499 VVTSPITKATK 11 Unmodified _VVTSPITKATK_ 0 0 0 REV__ENST00000484936.5_1_2:99342931-99343325:-|nuORF REV__ENST00000484936.5_1_2:99342931-99343325:-|nuORF MSMS UPN47_class_I_Rep_1 2 572.849853515625 2 572.850438 1143.68632 NaN NaN NaN NaN NaN NaN NaN 13.686 1 17.143 16.643 17.643 3.457 0 0 0 0.38417 1 390 390 0 0 1 + 52755 22178 32828 32845 60700 60700 0.12022829745683339 VVTSWGPRCCS 11 Unmodified _VVTSWGPRCCS_ 0 0 0 REV__AluSx_dup79095|chr12:123425655-123425951:-|1.930983087067946|0.0301307328699649|6.0|151.0|12|1|anti-sense REV__AluSx_dup79095|chr12:123425655-123425951:-|1.930983087067946|0.0301307328699649|6.0|151.0|12|1|anti-sense MSMS UPN46_class_I_Rep_3 1 597.590576171875 2 597.773351 1193.53215 NaN NaN NaN NaN NaN NaN NaN 61.373 1 61.373 60.873 61.873 0 0 0 0 0.38417 1 13654 13654 1.3295 0.63916 1 + 52756 17154 32829 32846 60701 60701 -0.05687646282945025 VVTTSVAIRS 10 Unmodified _VVTTSVAIRS_ 0 0 0 REV__L1MEg_dup1148|chr1:246921464-246921983:+|1.4950831119774035|0.0278132960743137|5.75|151.0|40|3|anti-sense REV__L1MEg_dup1148|chr1:246921464-246921983:+|1.4950831119774035|0.0278132960743137|5.75|151.0|40|3|anti-sense MSMS UPN46_class_I_Rep_3 1 516.8055419921875 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 90.323 1 90.323 89.823 90.823 0 0 0 0 0.53105 1 21778 21778 0 0 1 + 52757 28716 32830 32847 60702 60702 0.08297414506023415 VVTTSVAIRS 10 Unmodified _VVTTSVAIRS_ 0 0 0 REV__L1MEg_dup1148|chr1:246921464-246921983:+|1.4950831119774035|0.0278132960743137|5.75|151.0|40|3|anti-sense REV__L1MEg_dup1148|chr1:246921464-246921983:+|1.4950831119774035|0.0278132960743137|5.75|151.0|40|3|anti-sense MSMS UPN46_class_I_Rep_3 1 516.8060913085938 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 97.986 1 97.986 97.486 98.486 0 0 0 0 0.53105 1 23853 23853 0 0 1 + 52758 28716 32830 32847 60703 60703 0.08297414506023415 VVTTSVAIRS 10 Unmodified _VVTTSVAIRS_ 0 0 0 REV__L1MEg_dup1148|chr1:246921464-246921983:+|1.4950831119774035|0.0278132960743137|5.75|151.0|40|3|anti-sense REV__L1MEg_dup1148|chr1:246921464-246921983:+|1.4950831119774035|0.0278132960743137|5.75|151.0|40|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.805908203125 2 516.806031 1031.59751 NaN NaN NaN NaN NaN NaN NaN 103.23 1 107.01 106.51 107.51 3.7788 0 0 0 0.53105 1 25386 25386 0 0 1 + 52759 28716 32830 32847 60704 60704 0.08297414506023415 VVVEDKVP 8 Unmodified _VVVEDKVP_ 0 0 0 REV__ENSG00000179163|ENST00000374479|FUCA1 REV__ENSG00000179163|ENST00000374479|FUCA1 MSMS UPN47_class_I_Rep_2 3 442.75933837890625 2 442.758018 883.501483 NaN NaN NaN NaN NaN NaN NaN 82.248 1 85.647 85.147 86.147 3.3984 0 0 0 0.40625 1 20502 20502 2.3027 0 1 + 52760 20670 32831 32848 60705 60705 0.05507266665949828 VVVFCRHRV 9 Unmodified _VVVFCRHRV_ 0 0 0 AluJb_dup97407|chr15:64526617-64526950:-|1.4684171784391886|0.0115087318182329|7.0|151.0|16|1|anti-sense AluJb_dup97407|chr15:64526617-64526950:-|1.4684171784391886|0.0115087318182329|7.0|151.0|16|1|anti-sense AluJb_dup97407|chr15:64526617-64526950:-|1.4684171784391886|0.0115087318182329|7.0|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.8175048828125 2 557.818753 1113.62295 NaN NaN NaN NaN NaN NaN NaN 26.456 1 30.218 29.718 30.718 3.7624 0 0 0 0.40038 1 3786 3786 0.6015 0 1 52761 83 32832 32849 60706 60706 0.07068610547480603 VVVGALKQIK 10 Unmodified _VVVGALKQIK_ 0 0 0 REV__AluJb_dup71187|chr10:26542168-26542455:-|1.6904857074388306|0.0128762736244168|7.04|150.0|7|2|sense REV__AluJb_dup71187|chr10:26542168-26542455:-|1.6904857074388306|0.0128762736244168|7.04|150.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 528.2411499023438 2 527.852784 1053.69102 NaN NaN NaN NaN NaN NaN NaN 113.61 1 117.12 116.62 117.62 3.5109 0 0 0 0.53105 1 27640 27640 0 0 1 + 52762 16956 32833 32850 60707 60707 0.16631758679113773 VVVGWYFF 8 Unmodified _VVVGWYFF_ 0 0 0 L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|48|2|anti-sense L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|48|2|anti-sense L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|48|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 509.2841796875 2 508.765646 1015.51674 -0.19204 -9.7703E-05 0.028137 1.4315E-05 -0.1639 -8.3388E-05 508.7652586436469 40.749 0.98154 43.987 43.358 44.339 3.2372 90 62 2 0 0 0 0.72333 1 8035 8035 6.3541 0.59368 1 103710 52763 12104 32834 32851 60708 60708 0.009601782537970394 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.7837524414062 2 567.784241 1133.55393 0.42119 0.00023915 -0.037197 -2.112E-05 0.38399 0.00021803 567.784188144735 51.143 0.899 54.667 54.359 55.258 3.5246 162 63 4 0 0 0 0.43106 1 10452 10452 17.113 0 1 974360 52764 16 32835 32852 60709 60709 -0.007505182627483009 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.7836303710938 2 567.784241 1133.55393 0.43348 0.00024612 -0.32858 -0.00018656 0.1049 5.9561E-05 567.78393840653 52.893 1.6299 56.412 55.598 57.228 3.5192 238 135 3 0 0 0 0.4965 2 10880 10880;11207 12.241 0 1 372200 52765 16 32835 32852 60710;60711 60710 -0.007505182627483009 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 568.286865234375 2 567.784241 1133.55393 0.46077 0.00026162 0.77158 0.00043809 1.2323 0.00069971 567.7846166002994 54.903 0.24163 58.411 58.268 58.51 3.5082 24 15 2 0 0 0 0.4965 1 11674 11674 12.241 0 1 92248 52766 16 32835 32852 60712 60712 -0.007505182627483009 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 567.784423828125 2 567.784241 1133.55393 NaN NaN NaN NaN NaN NaN NaN 52.004 1 55.527 55.027 56.027 3.5227 0 0 0 0.53105 1 10781 10781 17.113 0 1 52767 16 32835 32852 60713 60713 -0.007505182627483009 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MSMS UPN48_class_I_Rep_2 6 567.7841796875 2 567.784241 1133.55393 NaN NaN NaN NaN NaN NaN NaN 52.257 1 55.896 55.396 56.396 3.639 0 0 0 0.53105 1 10837 10837 8.1555 0 1 52768 16 32835 32852 60714 60714 -0.007505182627483009 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.7846069335938 2 567.784241 1133.55393 0.33237 0.00018871 0.070284 3.9906E-05 0.40265 0.00022862 567.7842955467177 51.136 0.94528 54.746 54.427 55.372 3.6105 171 72 4 0 0 0 0.43106 1 10580 10580 17.113 0 1 891880 52769 16 32835 32852 60715 60715 -0.007505182627483009 VVVHTCSLNY 10 Unmodified _VVVHTCSLNY_ 0 0 0 AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense AluJb_dup110379|chr17:75367191-75367476:-|1.103012061216287|0.0080680395839572|7.1|150.0|11|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 567.7838745117188 2 567.784241 1133.55393 0.31186 0.00017707 -0.34619 -0.00019656 -0.034335 -1.9495E-05 567.783966204 53.031 1.2107 56.614 55.971 57.182 3.5836 144 85 2 0 0 0 0.36464 1 11087 11087 22.736 0 1 455900 52770 16 32835 32852 60716 60716 -0.007505182627483009 VVVIPRRL 8 Unmodified _VVVIPRRL_ 0 0 0 REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MULTI-MSMS UPN46_class_I_Rep_3 1 476.3265686035156 2 476.326737 950.63892 0.04524 2.1549E-05 -0.37922 -0.00018063 -0.33398 -0.00015908 476.32653934569106 32.239 0.046188 32.239 32.219 32.265 0 7 3 3 0 0 0 0.82752 1 5493 5493 0.79363 0 1 521890 + 52771 20334 32836 32853 60717 60717 0.16162640056029431 VVVIPRRL 8 Unmodified _VVVIPRRL_ 0 0 0 REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MULTI-MSMS UPN46_class_I_Rep_3 1 476.32672119140625 2 476.326737 950.63892 0.049771 2.3707E-05 -0.24335 -0.00011591 -0.19358 -9.2207E-05 476.32653192405445 32.454 0.065762 32.454 32.427 32.493 0 5 3 2 0 0 0 0.82752 1 5565 5565 2.8892 0 1 88986 + 52772 20334 32836 32853 60718 60718 0.16162640056029431 VVVKLSLLTNL 11 Unmodified _VVVKLSLLTNL_ 0 0 0 L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|45|3|anti-sense L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|45|3|anti-sense L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|45|3|anti-sense MSMS UPN47_class_I_Rep_2 3 599.7528076171875 2 599.892106 1197.76966 NaN NaN NaN NaN NaN NaN NaN 36.255 1 39.667 39.167 40.167 3.4114 0 0 0 0.38417 1 6780 6780 0 0 1 52773 12871 32837 32854 60719 60719 0.17868566193578772 VVVKMDSSI 9 Unmodified _VVVKMDSSI_ 0 0 0 ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 MSMS UPN47_class_I_Rep_1 2 489.2693786621094 2 489.270435 976.526318 NaN NaN NaN NaN NaN NaN NaN 75.943 1 79.347 78.847 79.847 3.4034 0 0 0 0.32573 1 18771 18771 9.3831 0 1 52774 743 32838 32855 60720 60720 0.03711578477009425 VVVKTVEALK 10 Unmodified _VVVKTVEALK_ 0 0 0 REV__ENSG00000167325|ENST00000300738|RRM1 REV__ENSG00000167325|ENST00000300738|RRM1 MSMS UPN47_class_I_Rep_1 2 543.349609375 2 543.350074 1084.6856 NaN NaN NaN NaN NaN NaN NaN 42.567 1 46.254 45.754 46.754 3.6875 0 0 0 0.53105 1 8666 8666 0 0 1 + 52775 20217 32839 32856 60721 60721 0.14664035096620864 VVVLIKLRN 9 Unmodified _VVVLIKLRN_ 0 0 0 REV__nc|ENSG00000050820|P56945-4|BCAR1 REV__nc|ENSG00000050820|P56945-4|BCAR1 MSMS UPN46_class_I_Rep_3 1 527.82861328125 2 527.360776 1052.707 NaN NaN NaN NaN NaN NaN NaN 91.839 1 91.839 91.339 92.339 0 0 0 0 0.4029 1 22200 22200 0 0 1 + 52776 31935 32840 32857 60722 60722 0.1827546491601879 VVVLRKLR 8 Unmodified _VVVLRKLR_ 0 0 0 L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|83|3|sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|83|3|sense L1MA3_dup8191|chr17:82991529-82995375:+|5.374696632681659|0.0503633765294098|6.74|151.0|83|3|sense MSMS UPN48_class_I_Rep_2 6 491.8475646972656 2 491.847836 981.681119 NaN NaN NaN NaN NaN NaN NaN 108.5 1 112.17 111.67 112.67 3.6746 0 0 0 0.40738 1 25744 25744 0.79363 0 1 52777 9639 32841 32858 60723 60723 0.18954615464406288 VVVLTKKLIL 10 Unmodified _VVVLTKKLIL_ 0 0 0 REV__L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|18|2|sense REV__L1MA2_dup6585|chr15:51525416-51527446:+|1.478684448369047|0.0102386465903641|7.17|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 563.775146484375 2 563.40211 1124.78967 NaN NaN NaN NaN NaN NaN NaN 53.887 1 57.47 56.97 57.97 3.5836 0 0 0 0.53105 1 11274 11274 0 0 1 + 52778 24926 32842 32859 60724 60724 0.23226361924184857 VVVMPEAPGE 10 Unmodified _VVVMPEAPGE_ 0 0 0 REV__nc|ENSG00000120899|Q14289-2|PTK2B REV__nc|ENSG00000120899|Q14289-2|PTK2B MSMS UPN48_class_I_Rep_3 7 514.2493896484375 2 514.260068 1026.50558 NaN NaN NaN NaN NaN NaN NaN 71.414 1 74.94 74.44 75.44 3.5266 0 0 0 0.53105 1 16582 16582 3.5965 0.70727 1 + 52779 18716 32843 32860 60725 60725 -0.006610119026390748 VVVMPVIVLP 10 Unmodified _VVVMPVIVLP_ 0 0 0 REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 533.3408813476562 2 533.340664 1064.66677 0.45526 0.00024281 -0.31911 -0.00017019 0.13615 7.2613E-05 533.3404061435026 90.247 0.59712 93.644 93.426 94.023 3.3976 142 78 3 0 0 0 0.56543 2 22572 22572;22679 0 0 1 284940 + 52780 21047 32844 32861 60726;60727 60726 0.1370278220124419 VVVMVMAETL 10 Unmodified _VVVMVMAETL_ 0 0 0 REV__ENST00000523027.1_1_8:26435925-26435988:+|nuORF REV__ENST00000523027.1_1_8:26435925-26435988:+|nuORF MSMS UPN47_class_I_Rep_1 2 546.291748046875 2 546.295596 1090.57664 NaN NaN NaN NaN NaN NaN NaN 43.109 1 46.797 46.297 47.297 3.6875 0 0 0 0.53105 1 8832 8832 3.5965 0 1 + 52781 22795 32845 32862 60728 60728 0.034973648105051325 VVVPAQRL 8 Unmodified _VVVPAQRL_ 0 0 0 L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|4|1|sense L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|4|1|sense L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 441.29742431640625 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 63.058 1 66.532 66.032 67.032 3.4738 0 0 0 0.40746 1 14146 14146 0.69038 0 1 52782 14629 32846 32863 60729 60729 0.10438385376664883 VVVPLLKI 8 Unmodified _VVVPLLKI_ 0 0 0 L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|81|3|anti-sense L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|81|3|anti-sense L1ME1_dup21083|chr11:47083754-47084890:-|1.097810376037105|0.1087113752353401|3.34|151.0|81|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 441.2974548339844 2 440.815139 879.615725 0.12348 5.4433E-05 -2.5989 -0.0011456 -2.4754 -0.0010912 440.8136292294898 110.69 0.034897 114.36 114.34 114.38 3.669 6 4 2 0 0 0 0.72333 1 26330 26330 0 0 1 32219 52783 12291 32847 32864 60730 60730 0.1711020121869069 VVVPRAQLP 9 Unmodified _VVVPRAQLP_ 0 0 0 LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|9|1|sense;LTR13_dup296|chr13:113621367-113622349:+|1.168356287503212|0.1356906191278602|3.11|151.0|32|3|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|9|1|sense LTR13_dup396|chr19:12711904-12712913:+|1.2629737947844812|0.1356122345655831|3.22|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 489.8062438964844 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 47.989 1 51.338 50.838 51.838 3.3492 0 0 0 0.4007 1 10335 10335 0.52476 0 1 52784 15563 32848 32865 60731 60731 0.11250343439451171 VVVQGKVL 8 Unmodified _VVVQGKVL_ 0 0 0 L1MA8_dup8159|chr12:102052018-102053779:+|1.1781615432574926|0.1869048602593352|2.66|151.0|85|2|anti-sense L1MA8_dup8159|chr12:102052018-102053779:+|1.1781615432574926|0.1869048602593352|2.66|151.0|85|2|anti-sense L1MA8_dup8159|chr12:102052018-102053779:+|1.1781615432574926|0.1869048602593352|2.66|151.0|85|2|anti-sense MSMS UPN47_class_I_Rep_1 2 421.278564453125 2 421.278921 840.543289 NaN NaN NaN NaN NaN NaN NaN 44.533 1 48.228 47.728 48.728 3.6951 0 0 0 0.39624 1 9267 9267 9.3474 0 1 52785 10068 32849 32866 60732 60732 0.11663867145114182 VVVQKLLL 8 Unmodified _VVVQKLLL_ 0 0 0 ENST00000256682.8_1_12:49331189-49331324:-|nuORF ENST00000256682.8_1_12:49331189-49331324:-|nuORF ENST00000256682.8_1_12:49331189-49331324:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 456.3180236816406 2 456.318046 910.621539 -0.48964 -0.00022343 0.23421 0.00010687 -0.25543 -0.00011656 456.3180397779822 36.468 0.88983 39.88 39.571 40.461 3.4114 112 66 2 0 0 0 0.82752 1 6985 6985 0.69038 0 1 119350 52786 5930 32850 32867 60733 60733 0.16265299730378047 VVVREFLSY 9 Unmodified _VVVREFLSY_ 0 0 0 REV__L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|334|3|anti-sense REV__L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|334|3|anti-sense MSMS UPN47_class_I_Rep_3 4 556.3104858398438 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 65.277 1 68.456 67.956 68.956 3.1795 0 0 0 0.37891 1 15667 15667 5.7319 0 1 + 52787 30049 32851 32868 60734 60734 0.0564660251143323 VVVRFYTP 8 Unmodified _VVVRFYTP_ 0 0 0 L1MD2_dup8698|chr15:30670780-30671658:+|2.007097876353227|0.0753712095405321|4.73|151.0|49|1|anti-sense L1MD2_dup8698|chr15:30670780-30671658:+|2.007097876353227|0.0753712095405321|4.73|151.0|49|1|anti-sense L1MD2_dup8698|chr15:30670780-30671658:+|2.007097876353227|0.0753712095405321|4.73|151.0|49|1|anti-sense MSMS UPN46_class_I_Rep_3 1 490.7818298339844 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 116.17 1 116.17 115.67 116.67 0 0 0 0 0.40738 1 28747 28747 0.79363 0 1 52788 12040 32852 32869 60735 60735 0.05850965656793505 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.3001708984375 2 435.300188 868.585822 0.029043 1.2642E-05 0.13438 5.8495E-05 0.16342 7.1137E-05 435.3002509489463 62.768 0.34351 66.127 65.94 66.284 3.3595 41 23 2 0 0 0 0.82752 1 14833 14833 2.5775 0 1 450490 + 52789 21899 32853 32870 60736 60736 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 435.3001708984375 2 435.300188 868.585822 0.026899 1.1709E-05 0.11724 5.1035E-05 0.14414 6.2744E-05 435.30017959224676 62.978 0.19018 66.338 66.254 66.444 3.3595 32 13 4 0 0 0 0.82752 1 14880 14880 2.5775 0 1 1079900 + 52790 21899 32853 32870 60737 60737 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.3002624511719 2 435.300188 868.585822 -0.43423 -0.00018902 0.86317 0.00037574 0.42894 0.00018672 435.3004815708929 62.96 0.40199 66.13 66.107 66.509 3.1698 34 26 2 0 0 0 0.82752 1 14970 14970 2.5775 0 1 1045000 + 52791 21899 32853 32870 60738 60738 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 435.3003845214844 2 435.300188 868.585822 -0.42354 -0.00018437 0.70945 0.00030882 0.2859 0.00012445 435.30047892373267 63.592 0.23077 66.766 66.721 66.951 3.1741 39 20 2 0 0 0 0.82752 1 15156 15156 2.5775 0 1 508150 + 52792 21899 32853 32870 60739 60739 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.3004455566406 2 435.300188 868.585822 0.15126 6.5842E-05 0.22457 9.7754E-05 0.37582 0.0001636 435.30027126322756 62.793 0.22083 66.302 66.143 66.364 3.5091 32 15 3 0 0 0 0.82752 1 13987 13987 2.5775 0 1 431280 + 52793 21899 32853 32870 60740 60740 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.30010986328125 2 435.300188 868.585822 0.15277 6.6501E-05 0.096683 4.2086E-05 0.24945 0.00010859 435.3002130347221 62.994 0.19416 66.503 66.364 66.558 3.5091 23 13 2 0 0 0 0.82752 1 14051 14051 2.5775 0 1 251700 + 52794 21899 32853 32870 60741 60741 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.3001403808594 2 435.300188 868.585822 0.15422 6.7133E-05 0.23837 0.00010376 0.39259 0.0001709 435.3002508114354 63.167 0.1846 66.676 66.547 66.731 3.5091 23 13 2 0 0 0 0.82752 1 14103 14103 2.5775 0 1 479290 + 52795 21899 32853 32870 60742 60742 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 435.30023193359375 2 435.300188 868.585822 0.1555 6.7688E-05 0.12978 5.6492E-05 0.28527 0.00012418 435.30020151562127 63.289 0.13839 66.798 66.731 66.87 3.5091 21 11 2 0 0 0 0.82752 1 14149 14149 2.5775 0 1 536200 + 52796 21899 32853 32870 60743 60743 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 435.300188 868.585822 0.026899 1.1709E-05 0.11724 5.1035E-05 0.14414 6.2744E-05 435.30017959224676 62.978 0.19018 66.338 66.254 66.444 3.3595 -0.021869 1.5534E-05 NaN 2.5775 32 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1079900 + 52797 21899 32853 32870 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 435.300188 868.585822 -0.43423 -0.00018902 0.86317 0.00037574 0.42894 0.00018672 435.3004815708929 62.96 0.40199 66.13 66.107 66.509 3.1698 -0.024068 0.00050153 NaN 2.5775 34 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1045000 + 52798 21899 32853 32870 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MATCH UPN48_class_I_Rep_1 5 2 435.300188 868.585822 0.087069 3.7901E-05 -0.62783 -0.0002733 -0.54076 -0.0002354 435.2998236189376 62.662 0.04879 66.124 66.106 66.155 3.4625 -0.030058 -0.00079653 NaN 2.5775 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 37730 + 52799 21899 32853 32870 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 435.300188 868.585822 0.15021 6.5388E-05 -0.15941 -6.9389E-05 -0.0091911 -4.0009E-06 435.30014705375555 62.838 0.20095 66.312 66.177 66.378 3.4738 -0.047329 -0.00022531 NaN 2.5775 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 302930 + 52800 21899 32853 32870 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.15277 6.6501E-05 0.096683 4.2086E-05 0.24945 0.00010859 435.3002130347221 62.994 0.19416 66.503 66.364 66.558 3.5091 0.14301 -2.3633E-06 NaN 2.5775 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 251700 + 52801 21899 32853 32870 0.14627262273370434 VVVRLGVK 8 Unmodified _VVVRLGVK_ 0 0 0 REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 435.300188 868.585822 0.15126 6.5842E-05 0.22457 9.7754E-05 0.37582 0.0001636 435.30027126322756 62.793 0.22083 66.302 66.143 66.364 3.5091 0.14817 -5.4433E-05 NaN 2.5775 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 431280 + 52802 21899 32853 32870 0.14627262273370434 VVVRPHLY 8 Unmodified _VVVRPHLY_ 0 0 0 AluJr4_dup13315|chr11:117085104-117085426:-|2.542479320744445|0.0129230826506015|7.62|151.0|3|1|sense AluJr4_dup13315|chr11:117085104-117085426:-|2.542479320744445|0.0129230826506015|7.62|151.0|3|1|sense AluJr4_dup13315|chr11:117085104-117085426:-|2.542479320744445|0.0129230826506015|7.62|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 491.7945556640625 2 491.795269 981.575986 0.21345 0.00010498 1.6526 0.00081276 1.8661 0.00091774 491.795838207633 56.242 0.21216 56.242 56.117 56.329 0 38 26 2 0 0 0 0.72333 1 12261 12261 0.69038 0 1 165100 52803 193 32854 32871 60744 60744 0.08446074267988024 VVVRPHLY 8 Unmodified _VVVRPHLY_ 0 0 0 AluJr4_dup13315|chr11:117085104-117085426:-|2.542479320744445|0.0129230826506015|7.62|151.0|3|1|sense AluJr4_dup13315|chr11:117085104-117085426:-|2.542479320744445|0.0129230826506015|7.62|151.0|3|1|sense AluJr4_dup13315|chr11:117085104-117085426:-|2.542479320744445|0.0129230826506015|7.62|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 491.79547119140625 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 55.783 1 59.262 58.762 59.762 3.4785 0 0 0 0.40625 1 12689 12689 2.3027 0 1 52804 193 32854 32871 60745 60745 0.08446074267988024 VVVRQKRAP 9 Unmodified _VVVRQKRAP_ 0 0 0 ENSG00000260734|ENST00000561754|TLE7 ENSG00000260734|ENST00000561754|TLE7 ENSG00000260734|ENST00000561754|TLE7 MSMS UPN47_class_I_Rep_3 4 526.8381958007812 2 526.838 1051.66145 NaN NaN NaN NaN NaN NaN NaN 115.58 1 119.04 118.54 119.54 3.462 0 0 0 0.4029 1 28427 28427 0 0 1 52805 5781 32855 32872 60746 60746 0.13768239453634123 VVVSKSILFLF 11 Unmodified _VVVSKSILFLF_ 0 0 0 L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|181|2|anti-sense L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|181|2|anti-sense L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|181|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 626.3870849609375 2 626.389199 1250.76385 0.42783 0.00026799 -1.8596 -0.0011648 -1.4317 -0.00089682 626.3883974310388 103.5 0.31724 107.12 106.84 107.16 3.6209 85 45 2 0 0 0 0.57992 1 24933 24933 5.7319 2.1354 1 51252000 52806 11099 32856 32873 60747 60747 0.14849467681892747 VVVSKSILFLF 11 Unmodified _VVVSKSILFLF_ 0 0 0 L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|181|2|anti-sense L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|181|2|anti-sense L1MC1_dup11532|chr16:56376103-56379089:+|1.6004921400619976|0.1706292236098459|3.23|151.0|181|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 626.3947143554688 2 626.389199 1250.76385 0.49473 0.0003099 -1.3952 -0.00087393 -0.90046 -0.00056404 626.8890362511353 103.48 0.61591 107.19 106.74 107.36 3.7108 124 93 2 0 0 0 0.57992 1 24510 24510 5.7319 0 1 107270000 52807 11099 32856 32873 60748 60748 0.14849467681892747 VVVSLAVCL 9 Unmodified _VVVSLAVCL_ 0 0 0 ENST00000266070.8_1_20:61545605-61545686:-|nuORF ENST00000266070.8_1_20:61545605-61545686:-|nuORF ENST00000266070.8_1_20:61545605-61545686:-|nuORF MSMS UPN48_class_I_Rep_3 7 451.7724609375 2 451.772614 901.530675 NaN NaN NaN NaN NaN NaN NaN 14.019 1 17.553 17.053 18.053 3.5341 0 0 0 0.4029 1 349 349 0 0 1 52808 6003 32857 32874 60749 60749 0.0759708769056715 VVVSTRKL 8 Unmodified _VVVSTRKL_ 0 0 0 REV__L1M1_dup5529|chrX:79403160-79406137:+|1.3918079833398227|0.0027899799979401|8.96|149.0|15|1|sense REV__L1M1_dup5529|chrX:79403160-79406137:+|1.3918079833398227|0.0027899799979401|8.96|149.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 451.29461669921875 2 451.295102 900.575651 NaN NaN NaN NaN NaN NaN NaN 37.287 1 40.989 40.489 41.489 3.7021 0 0 0 0.40659 1 6366 6366 1.8442 0 1 + 52809 24118 32858 32875 60750 60750 0.12138654548118666 VVVSVQAPL 9 Unmodified _VVVSVQAPL_ 0 0 0 REV__L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|186|2|anti-sense REV__L1PREC2_dup4536|chrX:74145863-74149757:+|1.076399524636643|0.0988506346388182|3.44|151.0|186|2|anti-sense MSMS UPN47_class_I_Rep_1 2 456.28125 2 456.28166 910.548768 NaN NaN NaN NaN NaN NaN NaN 44.89 1 48.59 48.09 49.09 3.6999 0 0 0 0.39518 1 9377 9377 1.8442 0 1 + 52810 30721 32859 32876 60751 60751 0.08991545936930834 VVWGCDQGHDY 11 Unmodified _VVWGCDQGHDY_ 0 0 0 ENSG00000158805.12,ZNF276,chr16,+,I5.1,89723710,89727278|36|13.71|2|intron;ENSG00000158805.12,ZNF276,chr16,+,I5.1,89723710,89727278|36|13.71|1|intron;ENST00000561536.5_1_16:89789452-89804651:+|nuORF;nc|ENSG00000158805|Q8N554-2|ZNF276;ENSG00000158805|ENST00000443381|ZNF276 ENSG00000158805.12,ZNF276,chr16,+,I5.1,89723710,89727278|36|13.71|2|intron ENSG00000158805.12,ZNF276,chr16,+,I5.1,89723710,89727278|36|13.71|2|intron MSMS UPN47_class_I_Rep_2 3 639.76806640625 2 639.764037 1277.51352 NaN NaN NaN NaN NaN NaN NaN 60.269 1 63.542 63.042 64.042 3.2731 0 0 0 0.38417 1 14091 14091 6.6304 2.1015 1 52811 3814 32860 32877 60752 60752 -0.11413484653166961 VVWHKRQQ 8 Unmodified _VVWHKRQQ_ 0 0 0 Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|18|2|sense Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|18|2|sense Tigger2_dup611|chr3:138744423-138745339:-|1.3179888745002626|0.0411541569609232|5.0|151.0|18|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 540.29052734375 2 540.8067 1079.59885 0.35593 0.00019249 2.9696 0.001606 3.3255 0.0017985 541.3096449855342 60.674 0.028603 63.839 63.814 63.843 3.1651 4 2 2 0 0 0 0.72333 1 14260 14260 2.5775 0.27475 1 14973 52812 33323 32861 32878 60753 60753 0.06223093385460743 VVWKKNGR 8 Unmodified _VVWKKNGR_ 0 0 0 REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|7|2|sense REV__ERVL-E-int_dup279|chr1:77707624-77708145:+|3.3230203106499303|0.4923393563265065|2.75|151.0|7|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 493.2921447753906 2 493.798343 985.582134 0.29353 0.00014495 1.4348 0.00070852 1.7284 0.00085346 493.7991349609704 41.509 0.15562 41.509 41.377 41.532 0 17 12 2 0 0 0 0.72333 1 8148 8148 2.3027 0 1 99922 + 52813 23278 32862 32879 60754 60754 0.08876592499518665 VVWKLHRA 8 Unmodified _VVWKLHRA_ 0 0 0 ENSG00000128165|ENST00000395737|ADM2 ENSG00000128165|ENST00000395737|ADM2 ENSG00000128165|ENST00000395737|ADM2 MULTI-MSMS UPN46_class_I_Rep_3 1 505.310302734375 2 504.808711 1007.60287 0.17054 8.6089E-05 0.19659 9.9239E-05 0.36712 0.00018533 504.8087785159019 35.311 0.14371 35.311 35.252 35.396 0 17 9 3 0 0 0 0.82752 1 6435 6435 2.8892 0 1 285100 52814 2583 32863 32880 60755 60755 0.09937182879173179 VVWKMVWW 8 Unmodified _VVWKMVWW_ 0 0 0 L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|16|3|sense L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|16|3|sense L1MB3_dup334|chr1:40179566-40180250:-|1.700474137391982|0.0147200612426514|6.85|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 567.3042602539062 2 567.301873 1132.58919 NaN NaN NaN NaN NaN NaN NaN 23.097 1 26.74 26.24 27.24 3.6432 0 0 0 0.40738 1 2462 2462 0.79363 0 1 52815 10416 32864 32881 60756 60756 0.02820189055728406 VVWKWVNEDG 10 Unmodified _VVWKWVNEDG_ 0 0 0 REV__L1MB8_dup4758|chr5:80143852-80144538:-|1.214515114836795|0.3557038899642594|1.77|151.0|14|2|sense REV__L1MB8_dup4758|chr5:80143852-80144538:-|1.214515114836795|0.3557038899642594|1.77|151.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 616.309326171875 2 616.308938 1230.60332 NaN NaN NaN NaN NaN NaN NaN 57.587 1 61.081 60.581 61.581 3.4942 0 0 0 0.53105 1 12490 12490 1.3295 0.13619 1 + 52816 26420 32865 32882 60757 60757 -0.0027548698228656576 VVWLMVLLI 9 Unmodified _VVWLMVLLI_ 0 0 0 ENSG00000174946|ENST00000309180|GPR171 ENSG00000174946|ENST00000309180|GPR171 ENSG00000174946|ENST00000309180|GPR171 MULTI-MSMS UPN47_class_I_Rep_2 3 543.3423461914062 2 543.343206 1084.67186 0.012631 6.8629E-06 -0.56952 -0.00030945 -0.55689 -0.00030258 543.3427153118854 13.01 0.15494 16.398 16.359 16.514 3.388 16 13 2 0 0 0 0.48414 1 219 219 2.3027 0 1 23608 52817 4699 32866 32883 60758 60758 0.1329108606387308 VVWLMVLLI 9 Unmodified _VVWLMVLLI_ 0 0 0 ENSG00000174946|ENST00000309180|GPR171 ENSG00000174946|ENST00000309180|GPR171 ENSG00000174946|ENST00000309180|GPR171 MULTI-MATCH UPN47_class_I_Rep_1 2 2 543.343206 1084.67186 -0.089151 -4.844E-05 -0.87192 -0.00047375 -0.96107 -0.00052219 543.3427396814362 12.988 0.14687 16.438 16.381 16.528 3.45 0.020097 -0.00011119 NaN 2.3027 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 29796 52818 4699 32866 32883 0.1329108606387308 VVWPKEPRI 9 Unmodified _VVWPKEPRI_ 0 0 0 MER58B_dup1055|chr2:233168425-233168696:-|1.4992977638425695|0.0850019847196985|4.14|151.0|10|3|sense MER58B_dup1055|chr2:233168425-233168696:-|1.4992977638425695|0.0850019847196985|4.14|151.0|10|3|sense MER58B_dup1055|chr2:233168425-233168696:-|1.4992977638425695|0.0850019847196985|4.14|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.3343505859375 2 562.334759 1122.65496 0.49266 0.00027704 0.53194 0.00029913 1.0246 0.00057617 562.3344506126889 108.69 0.89131 112.36 112.23 113.12 3.6746 225 100 4 0 0 0 0.50015 1 25804 25804 0.6015 0 1 76886000 52819 16138 32867 32884 60759 60759 0.09854301502286944 VVWRRRPG 8 Unmodified _VVWRRRPG_ 0 0 0 REV__ENST00000417689.5_1_16:66968434-66968578:+|nuORF REV__ENST00000417689.5_1_16:66968434-66968578:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.3094482421875 2 513.30941 1024.60427 NaN NaN NaN NaN NaN NaN NaN 87.806 1 91.253 90.753 91.753 3.4471 0 0 0 0.40746 1 21828 21828 0.69038 0 1 + 52820 22228 32868 32885 60760 60760 0.09294816967940278 VVWVCCFIR 9 Unmodified _VVWVCCFIR_ 0 0 0 L1MC5a_dup2983|chr3:36975063-36975816:+|1.107982605396676|0.1721839358511428|2.69|151.0|46|2|anti-sense L1MC5a_dup2983|chr3:36975063-36975816:+|1.107982605396676|0.1721839358511428|2.69|151.0|46|2|anti-sense L1MC5a_dup2983|chr3:36975063-36975816:+|1.107982605396676|0.1721839358511428|2.69|151.0|46|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.7909545898438 2 562.790815 1123.56708 0.40673 0.0002289 -0.93589 -0.00052671 -0.52917 -0.00029781 562.7902490836666 47.154 0.43433 47.154 46.92 47.355 0 66 43 2 0 0 0 0.45688 1 9739 9739 4.756 0 1 208930 52821 11738 32869 32886 60761 60761 0.010236413156235358 VVWVFCFR 8 Unmodified _VVWVFCFR_ 0 0 0 L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|95|3|anti-sense L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|95|3|anti-sense L1PA15_dup2137|chr4:128485191-128486811:+|1.0707507691956266|0.1938442318772426|2.47|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2794799804688 2 528.278398 1054.54224 NaN NaN NaN NaN NaN NaN NaN 34.353 1 38.026 37.526 38.526 3.6735 0 0 0 0.40738 1 5527 5527 0.79363 0 1 52822 13897 32870 32887 60762 60762 0.01715329504577312 VVWVLLRY 8 Unmodified _VVWVLLRY_ 0 0 0 HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|88|2|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|88|2|sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|88|2|sense MSMS UPN48_class_I_Rep_3 7 524.8108520507812 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 49.366 1 52.995 52.495 53.495 3.6291 0 0 0 0.4044 1 9902 9902 4.756 0 1 52823 8381 32871 32888 60763 60763 0.10623817961891291 VVWYCFFF 8 Unmodified _VVWYCFFF_ 0 0 0 REV__L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|123|3|anti-sense REV__L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.76171875 2 555.759507 1109.50446 NaN NaN NaN NaN NaN NaN NaN 87.232 1 90.87 90.37 91.37 3.6372 0 0 0 0.39167 1 21792 21792 11.114 0 1 + 52824 28754 32872 32889 60764 60764 -0.045911814808960116 VVYACSPRYLG 11 Unmodified _VVYACSPRYLG_ 0 0 0 AluJr_dup52749|chr11:73116529-73116836:-|1.5851087542073428|0.0126216147357266|6.97|151.0|4|1|sense AluJr_dup52749|chr11:73116529-73116836:-|1.5851087542073428|0.0126216147357266|6.97|151.0|4|1|sense AluJr_dup52749|chr11:73116529-73116836:-|1.5851087542073428|0.0126216147357266|6.97|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 614.3106689453125 2 614.313166 1226.61178 NaN NaN NaN NaN NaN NaN NaN 50.186 1 53.88 53.38 54.38 3.6946 0 0 0 0.38417 1 10220 10220 4.5289 0.93237 1 52825 159 32873 32890 60765 60765 0.007537436626762428 VVYEETLCKL 10 Unmodified _VVYEETLCKL_ 0 0 0 REV__Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|29|3|sense REV__Tigger4_dup985|chr10:96849510-96850487:+|1.4182552011328855|0.0132225926646865|6.74|151.0|29|3|sense MSMS UPN48_class_I_Rep_1 5 598.8140869140625 2 598.815207 1195.61586 NaN NaN NaN NaN NaN NaN NaN 58.63 1 62.117 61.617 62.617 3.487 0 0 0 0.53105 1 12810 12810 2.4985 0.19575 1 + 52826 32792 32874 32891 60766 60766 0.025877883657358325 VVYEVNKVFT 10 Unmodified _VVYEVNKVFT_ 0 0 0 REV__ENST00000399469.2_2_6:12126027-12131097:+|nuORF REV__ENST00000399469.2_2_6:12126027-12131097:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 600.3143310546875 2 599.329339 1196.64412 0.46176 0.00027675 0.54056 0.00032397 1.0023 0.00060072 599.3293327516964 57.608 0.81606 61.14 60.732 61.548 3.5317 153 65 3 0 0 0 0.53654 1 12399 12399 7.2892 2.7604 1 273660 + 52827 22151 32875 32892 60767 60767 0.05366854337330551 VVYFKREN 8 Unmodified _VVYFKREN_ 0 0 0 L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|27|2|sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|27|2|sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 527.7877807617188 2 527.787641 1053.56073 NaN NaN NaN NaN NaN NaN NaN 112.38 1 116.04 115.54 116.54 3.6614 0 0 0 0.40404 1 26699 26699 5.2307 0 1 52828 10860 32876 32893 60768 60768 0.03609162680140798 VVYGGFTNLL 10 Unmodified _VVYGGFTNLL_ 0 0 0 REV__L1ME3A_dup2557|chr3:11331795-11332441:+|1.0640789262808918|0.0330930620637201|5.01|150.0|33|1|anti-sense REV__L1ME3A_dup2557|chr3:11331795-11332441:+|1.0640789262808918|0.0330930620637201|5.01|150.0|33|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.7984619140625 2 541.797675 1081.5808 0.55691 0.00030173 0.14838 8.0394E-05 0.70529 0.00038213 541.7977263107057 60.35 0.71218 63.824 63.503 64.215 3.4737 93 50 2 0 0 0 0.54822 1 13267 13267 5.7319 0.43497 1 338170 + 52829 28010 32877 32894 60769 60769 0.04326913620070627 VVYIHVRY 8 Unmodified _VVYIHVRY_ 0 0 0 REV__L1MA6_dup167|chr1:156224143-156224408:-|1.0820228552531814|0.3482379080987129|1.64|151.0|11|1|anti-sense REV__L1MA6_dup167|chr1:156224143-156224408:-|1.0820228552531814|0.3482379080987129|1.64|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_1 5 524.801025390625 2 524.800552 1047.58655 NaN NaN NaN NaN NaN NaN NaN 25.781 1 29.347 28.847 29.847 3.5667 0 0 0 0.40738 1 3056 3056 0.79363 0 1 + 52830 25437 32878 32895 60770 60770 0.06466056922431562 VVYKDFSLLN 10 Unmodified _VVYKDFSLLN_ 0 0 0 REV__L1ME1_dup15889|chr9:123731260-123732677:+|1.1296079042649496|0.0088279840309716|7.0|151.0|84|3|anti-sense REV__L1ME1_dup15889|chr9:123731260-123732677:+|1.1296079042649496|0.0088279840309716|7.0|151.0|84|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 600.314453125 2 599.329339 1196.64412 0.52396 0.00031403 0.40065 0.00024012 0.92461 0.00055415 599.3292989436693 57.737 1.0359 61.231 60.723 61.759 3.4942 170 77 3 0 0 0 0.55873 2 12502 12502;12576 4.3292 0 1 298880 + 52831 27624 32879 32896 60771;60772 60771 0.053668543373532884 VVYKDFSLLN 10 Unmodified _VVYKDFSLLN_ 0 0 0 REV__L1ME1_dup15889|chr9:123731260-123732677:+|1.1296079042649496|0.0088279840309716|7.0|151.0|84|3|anti-sense REV__L1ME1_dup15889|chr9:123731260-123732677:+|1.1296079042649496|0.0088279840309716|7.0|151.0|84|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 600.3139038085938 2 599.329339 1196.64412 0.58544 0.00035087 0.55039 0.00032987 1.1358 0.00068074 599.3291866741263 57.694 1.0324 61.208 60.738 61.771 3.5142 157 76 3 0 0 0 0.55873 1 12508 12508 4.3292 0 1 274630 + 52832 27624 32879 32896 60773 60773 0.053668543373532884 VVYLVTEVDY 10 Unmodified _VVYLVTEVDY_ 0 0 0 ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF MSMS UPN47_class_I_Rep_1 2 600.3135375976562 2 600.313354 1198.61216 NaN NaN NaN NaN NaN NaN NaN 56.575 1 60.033 59.533 60.533 3.4572 0 0 0 0.53105 1 12932 12932 3.5965 0.60125 1 52833 6838 32880 32897 60774 60774 0.020794418635205147 VVYLVTEVDY 10 Unmodified _VVYLVTEVDY_ 0 0 0 ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF MSMS UPN47_class_I_Rep_2 3 600.3132934570312 2 600.313354 1198.61216 NaN NaN NaN NaN NaN NaN NaN 58.479 1 61.761 61.261 62.261 3.2818 0 0 0 0.53105 1 13541 13541 3.5965 0 1 52834 6838 32880 32897 60775 60775 0.020794418635205147 VVYLVTEVDY 10 Unmodified _VVYLVTEVDY_ 0 0 0 ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF MSMS UPN47_class_I_Rep_3 4 600.3139038085938 2 600.313354 1198.61216 NaN NaN NaN NaN NaN NaN NaN 58.925 1 62.09 61.59 62.59 3.1658 0 0 0 0.53105 1 13729 13729 1.4819 0 1 52835 6838 32880 32897 60776 60776 0.020794418635205147 VVYLVTEVDY 10 Unmodified _VVYLVTEVDY_ 0 0 0 ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 600.3130493164062 2 600.313354 1198.61216 0.53622 0.0003219 1.0432 0.00062624 1.5794 0.00094815 600.3137725196916 58.273 0.27062 61.76 61.64 61.911 3.487 16 13 2 0 0 0 0.56033 1 12703 12703 3.5965 0.60125 1 65677 52836 6838 32880 32897 60777 60777 0.020794418635205147 VVYLVTEVDY 10 Unmodified _VVYLVTEVDY_ 0 0 0 ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF MSMS UPN48_class_I_Rep_2 6 600.3151245117188 2 600.313354 1198.61216 NaN NaN NaN NaN NaN NaN NaN 58.184 1 61.683 61.183 62.183 3.4987 0 0 0 0.53105 1 12651 12651 6.7232 0.99131 1 52837 6838 32880 32897 60778 60778 0.020794418635205147 VVYLVTEVDY 10 Unmodified _VVYLVTEVDY_ 0 0 0 ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF ENST00000457388.1_1_10:37626656-37627235:+|nuORF MSMS UPN48_class_I_Rep_3 7 600.3142700195312 2 600.313354 1198.61216 NaN NaN NaN NaN NaN NaN NaN 58.382 1 61.905 61.405 62.405 3.5231 0 0 0 0.53105 1 12646 12646 6.2058 0.97511 1 52838 6838 32880 32897 60779 60779 0.020794418635205147 VVYMPEFYIA 10 Unmodified _VVYMPEFYIA_ 0 0 0 REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense MSMS UPN47_class_I_Rep_2 3 616.3067626953125 2 616.307018 1230.59948 NaN NaN NaN NaN NaN NaN NaN 46.363 1 49.715 49.215 50.215 3.3515 0 0 0 0.53105 1 9855 9855 1.4819 0 1 + 52839 29521 32881 32898 60780 60780 -0.006592928003556153 VVYMPEFYIA 10 Unmodified _VVYMPEFYIA_ 0 0 0 REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense MSMS UPN47_class_I_Rep_3 4 616.3090209960938 2 616.307018 1230.59948 NaN NaN NaN NaN NaN NaN NaN 46.53 1 49.774 49.274 50.274 3.2439 0 0 0 0.53105 1 9962 9962 3.5965 0 1 + 52840 29521 32881 32898 60781 60781 -0.006592928003556153 VVYMPEFYIA 10 Unmodified _VVYMPEFYIA_ 0 0 0 REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense MSMS UPN47_class_I_Rep_3 4 616.3095703125 2 616.307018 1230.59948 NaN NaN NaN NaN NaN NaN NaN 46.73 1 49.974 49.474 50.474 3.2439 0 0 0 0.53105 1 10024 10024 1.4819 0 1 + 52841 29521 32881 32898 60782 60782 -0.006592928003556153 VVYMPEFYIA 10 Unmodified _VVYMPEFYIA_ 0 0 0 REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|230|2|anti-sense MSMS UPN48_class_I_Rep_2 6 616.308349609375 2 616.307018 1230.59948 NaN NaN NaN NaN NaN NaN NaN 46.428 1 50.177 49.677 50.677 3.7494 0 0 0 0.53105 1 9071 9071 3.5965 0 1 + 52842 29521 32881 32898 60783 60783 -0.006592928003556153 VVYNRLPGMF 10 Unmodified _VVYNRLPGMF_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MSMS UPN47_class_I_Rep_1 2 598.3178100585938 2 598.318251 1194.62195 NaN NaN NaN NaN NaN NaN NaN 61.627 1 64.995 64.495 65.495 3.3681 0 0 0 0.53105 1 14462 14462 3.5965 0 1 52843 874 32882 32899 60784 60784 0.03242351387916642 VVYPWTQRF 9 Unmodified _VVYPWTQRF_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_1 5 598.3168334960938 2 598.316566 1194.61858 0.56784 0.00033975 0.0084683 5.0667E-06 0.57631 0.00034482 598.3164230141138 61.987 0.88772 65.455 65.049 65.937 3.4678 188 75 3 0 0 0 0.081756 5 13813 13773;13813;13853;13895;13933 38.176 24.668 1 535750 + 52844 5729 32883 32900 60785;60786;60787;60788;60789 60786 0.029054246055238764 VVYPWTQRF 9 Unmodified _VVYPWTQRF_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_2 6 598.3168334960938 2 598.316566 1194.61858 0.53988 0.00032302 0.045619 2.7295E-05 0.5855 0.00035031 598.3164900144124 61.854 0.80805 65.327 65.029 65.837 3.4738 161 65 3 0 0 0 0.048662 7 13768 13729;13768;13805;13846;13885;13900;13928 49.554 38.73 1 458430 + 52845 5729 32883 32900 60790;60791;60792;60793;60794;60795;60796 60791 0.029054246055238764 VVYPWTQRF 9 Unmodified _VVYPWTQRF_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MULTI-MSMS UPN48_class_I_Rep_3 7 598.31689453125 2 598.316566 1194.61858 0.5369 0.00032124 0.1136 6.7966E-05 0.65049 0.0003892 598.3165494238846 61.71 0.80564 65.22 64.858 65.664 3.5104 167 69 3 0 0 0 0.074399 5 13662 13625;13662;13699;13740;13769 39.95 31.356 1 442860 + 52846 5729 32883 32900 60797;60798;60799;60800;60801 60798 0.029054246055238764 VVYPWTQRF 9 Unmodified _VVYPWTQRF_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_3 7 598.3147583007812 2 598.316566 1194.61858 NaN NaN NaN NaN NaN NaN NaN 62.08 1 65.59 65.09 66.09 3.5104 0 0 0 0.37476 1 13772 13772 6.7232 0 1 + 52847 5729 32883 32900 60802 60802 0.029054246055238764 VVYPWTQRF 9 Unmodified _VVYPWTQRF_ 0 0 0 ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2 ENSG00000244734|ENST00000335295|HBB ENSG00000244734|ENST00000335295|HBB MSMS UPN48_class_I_Rep_3 7 598.3165283203125 2 598.316566 1194.61858 NaN NaN NaN NaN NaN NaN NaN 62.105 1 65.616 65.116 66.116 3.5104 0 0 0 0.38784 1 13780 13780 3.5965 0 1 + 52848 5729 32883 32900 60803 60803 0.029054246055238764 VVYPYNEI 8 Unmodified _VVYPYNEI_ 0 0 0 L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense;L1ME1_dup11431|chr6:38125977-38126723:-|1.0928243923756988|0.0299602771657386|5.19|150.0|16|2|sense;L1MB7_dup9374|chr7:157232870-157233292:-|1.143552475038651|0.2655191173540583|2.11|151.0|1|1|sense;L1MB5_dup3038|chr7:66701890-66702347:-|1.4848706791655302|0.2722232749819102|2.45|151.0|13|3|sense;L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|5|1|sense;L1ME1_dup20145|chr10:103150058-103151181:-|4.599287396355214|0.0706060630167634|6.03|151.0|24|2|sense;L1MB5_dup74|chr1:10175825-10176773:-|1.1500898816540472|0.2737848142467884|2.07|151.0|5|1|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense L1ME1_dup11787|chr6:82181263-82181702:+|1.0314656270663602|0.1591883636539925|2.7|150.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 498.7554626464844 2 498.755475 995.496398 NaN NaN NaN NaN NaN NaN NaN 76.171 1 79.574 79.074 80.074 3.4034 0 0 0 0.388 1 18836 18836 12.532 0 1 52849 12183 32884 32901 60804 60804 -0.0015303719667372206 VVYRNGDPFF 10 Unmodified _VVYRNGDPFF_ 0 0 0 ENSG00000222046|ENST00000409358|DCDC2B ENSG00000222046|ENST00000409358|DCDC2B ENSG00000222046|ENST00000409358|DCDC2B MULTI-MSMS UPN48_class_I_Rep_1 5 607.806396484375 2 607.303655 1212.59276 0.51828 0.00031475 -0.1628 -9.8868E-05 0.35548 0.00021588 607.3033311840616 57.161 0.75541 60.655 60.374 61.129 3.4942 106 65 2 0 0 0 0.52083 1 12391 12391 9.3831 0 1 247020 52850 5650 32885 32902 60805 60805 -0.005034696367374636 VVYRNGDPFF 10 Unmodified _VVYRNGDPFF_ 0 0 0 ENSG00000222046|ENST00000409358|DCDC2B ENSG00000222046|ENST00000409358|DCDC2B ENSG00000222046|ENST00000409358|DCDC2B MULTI-MSMS UPN48_class_I_Rep_2 6 607.8055419921875 2 607.303655 1212.59276 0.59346 0.00036041 -0.19455 -0.00011815 0.39891 0.00024226 607.3033421142381 57.126 0.69511 60.64 60.44 61.135 3.5142 107 59 2 0 0 0 0.52083 1 12335 12335 9.3831 0 1 259610 52851 5650 32885 32902 60806 60806 -0.005034696367374636 VVYSMGIDKCI 11 Unmodified _VVYSMGIDKCI_ 0 0 0 L1MC1_dup1020|chr1:235860173-235860659:-|1.1769094139100964|0.0238467215402417|5.63|151.0|21|1|anti-sense L1MC1_dup1020|chr1:235860173-235860659:-|1.1769094139100964|0.0238467215402417|5.63|151.0|21|1|anti-sense L1MC1_dup1020|chr1:235860173-235860659:-|1.1769094139100964|0.0238467215402417|5.63|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 614.8126220703125 2 614.309235 1226.60392 0.45811 0.00028142 3.9082 0.0024008 4.3663 0.0026822 614.8126240645738 50.289 0.11691 53.984 53.877 53.994 3.6946 6 5 2 0 0 0 0.62748 1 10242 10242 4.5289 0.58447 1 122340 52852 11077 32886 32903 60807 60807 -0.0003215164908851875 VVYSMGIDKCI 11 Unmodified _VVYSMGIDKCI_ 0 0 0 L1MC1_dup1020|chr1:235860173-235860659:-|1.1769094139100964|0.0238467215402417|5.63|151.0|21|1|anti-sense L1MC1_dup1020|chr1:235860173-235860659:-|1.1769094139100964|0.0238467215402417|5.63|151.0|21|1|anti-sense L1MC1_dup1020|chr1:235860173-235860659:-|1.1769094139100964|0.0238467215402417|5.63|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_2 6 614.3117065429688 2 614.309235 1226.60392 NaN NaN NaN NaN NaN NaN NaN 49.404 1 53.121 52.621 53.621 3.7175 0 0 0 0.38417 1 9978 9978 4.5289 0.58447 1 52853 11077 32886 32903 60808 60808 -0.0003215164908851875 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS UPN46_class_I_Rep_3 1 600.31396484375 2 600.314023 1198.61349 0.5155 0.00030946 0.064652 3.8811E-05 0.58016 0.00034828 600.3139119054238 62.571 0.83243 62.571 62.191 63.024 0 211 83 3 0 0 0 0.40227 6 13962 13920;13962;13995;14033;14070;14109 19.257 8.4331 1 1038600 52854 5058 32887 32904 60809;60810;60811;60812;60813;60814 60810 0.022131207429538335 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS UPN47_class_I_Rep_1 2 600.3140869140625 2 600.314023 1198.61349 0.38993 0.00023408 0.19733 0.00011846 0.58726 0.00035254 600.3140032162029 56.957 1.5317 60.414 59.96 61.492 3.4572 343 125 4 0 0 0 0.33585 9 13127 12971;13007;13046;13087;13127;13165;13203;13244;13292 25.399 9.5768 1 1352000 52855 5058 32887 32904 60815;60816;60817;60818;60819;60820;60821;60822;60823 60819 0.022131207429538335 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS UPN47_class_I_Rep_2 3 600.3143310546875 2 600.314023 1198.61349 0.51898 0.00031155 -0.028179 -1.6916E-05 0.4908 0.00029464 600.3139008986049 57.181 1.5949 60.473 60.055 61.65 3.2912 339 132 4 0 0 0 0.40227 10 13105 13031;13068;13105;13146;13187;13224;13263;13299;13335;13379 19.257 13.906 1 1061600 52856 5058 32887 32904 60824;60825;60826;60827;60828;60829;60830;60831;60832;60833 60826 0.022131207429538335 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS UPN47_class_I_Rep_3 4 600.3143920898438 2 600.314023 1198.61349 0.36872 0.00022135 0.14171 8.507E-05 0.51043 0.00030642 600.3139959076838 57.467 1.4533 60.635 60.124 61.578 3.1681 341 115 4 0 0 0 0.40227 10 13179 13142;13179;13219;13256;13294;13333;13376;13416;13461;13541 19.257 13.906 1 1041000 52857 5058 32887 32904 60834;60835;60836;60837;60838;60839;60840;60841;60842;60843 60835 0.022131207429538335 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS UPN48_class_I_Rep_1 5 600.3142700195312 2 600.314023 1198.61349 0.51505 0.00030919 0.14482 8.694E-05 0.65987 0.00039613 600.3140352088956 57.172 1.4295 60.666 60.218 61.647 3.4942 376 115 5 0 0 0 0.33585 6 12463 12269;12308;12345;12385;12423;12463 25.399 9.5521 1 3130800 52858 5058 32887 32904 60844;60845;60846;60847;60848;60849 60849 0.022131207429538335 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS UPN48_class_I_Rep_2 6 600.3142700195312 2 600.314023 1198.61349 0.59135 0.000355 0.067546 4.0549E-05 0.6589 0.00039554 600.3139806381536 57.169 1.4265 60.683 60.195 61.622 3.5142 351 114 4 0 0 0 0.36464 7 12358 12240;12279;12318;12358;12395;12436;12578 22.736 8.4331 1 2969700 52859 5058 32887 32904 60850;60851;60852;60853;60854;60855;60856 60853 0.022131207429538335 VVYSSGRVFW 10 Unmodified _VVYSSGRVFW_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 600.314023 1198.61349 0.45407 0.00027259 0.18833 0.00011306 0.6424 0.00038564 600.3140690692749 57.062 1.429 60.605 60.141 61.57 3.5427 0.025698 7.2904E-05 NaN 25.399 382 127 4 NaN NaN NaN NaN 0 NaN NaN 0 3199700 52860 5058 32887 32904 0.022131207429538335 VVYSYFAQDL 10 Unmodified _VVYSYFAQDL_ 0 0 0 ENSG00000197360|ENST00000357774|ZNF98 ENSG00000197360|ENST00000357774|ZNF98 ENSG00000197360|ENST00000357774|ZNF98 MSMS UPN47_class_I_Rep_3 4 602.7994384765625 2 602.797872 1203.58119 NaN NaN NaN NaN NaN NaN NaN 71.133 1 74.344 73.844 74.844 3.2113 0 0 0 0.53105 1 17439 17439 3.5965 0.31518 1 52861 5364 32888 32905 60857 60857 -0.012457114507014921 VVYSYHGIFF 10 Unmodified _VVYSYHGIFF_ 0 0 0 L1MB8_dup10771|chr11:9256484-9257021:+|2.248466992052762|0.0070446755750746|8.32|151.0|9|2|sense L1MB8_dup10771|chr11:9256484-9257021:+|2.248466992052762|0.0070446755750746|8.32|151.0|9|2|sense L1MB8_dup10771|chr11:9256484-9257021:+|2.248466992052762|0.0070446755750746|8.32|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 616.3086547851562 2 616.310949 1230.60735 NaN NaN NaN NaN NaN NaN NaN 50.984 1 50.984 50.484 51.484 0 0 0 0 0.53105 1 10804 10804 6.7232 0 1 52862 10904 32889 32906 60858 60858 0.0012660251140914625 VVYSYHGIFF 10 Unmodified _VVYSYHGIFF_ 0 0 0 L1MB8_dup10771|chr11:9256484-9257021:+|2.248466992052762|0.0070446755750746|8.32|151.0|9|2|sense L1MB8_dup10771|chr11:9256484-9257021:+|2.248466992052762|0.0070446755750746|8.32|151.0|9|2|sense L1MB8_dup10771|chr11:9256484-9257021:+|2.248466992052762|0.0070446755750746|8.32|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 616.3091430664062 2 616.310949 1230.60735 NaN NaN NaN NaN NaN NaN NaN 46.271 1 49.623 49.123 50.123 3.3515 0 0 0 0.53105 1 9828 9828 3.5965 0 1 52863 10904 32889 32906 60859 60859 0.0012660251140914625 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 614.3113403320312 2 614.31148 1226.60841 0.41991 0.00025796 0.39498 0.00024264 0.81489 0.0005006 614.3116745229356 49.431 0.60063 52.955 52.705 53.306 3.5246 48 39 2 0 0 0 0.54078 2 9968 9968;10021 6.7232 1.8262 1 128460 + 52864 30104 32890 32907 60860;60861 60860 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 614.3121948242188 2 614.31148 1226.60841 0.47771 0.00029347 0.12608 7.7451E-05 0.60379 0.00037092 614.3113831162881 55.142 0.62692 58.65 58.342 58.969 3.5082 63 39 2 0 0 0 0.54078 5 11675 11675;11704;11727;11773;11817 6.7232 1.8262 1 133170 + 52865 30104 32890 32907 60862;60863;60864;60865;60866 60862 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MSMS UPN48_class_I_Rep_1 5 614.311767578125 2 614.31148 1226.60841 NaN NaN NaN NaN NaN NaN NaN 50.237 1 53.762 53.262 54.262 3.5246 0 0 0 0.53105 1 10238 10238 3.5965 0 1 + 52866 30104 32890 32907 60867 60867 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 614.3118286132812 2 614.31148 1226.60841 0.60953 0.00037444 0.12723 7.8157E-05 0.73676 0.0004526 614.8130995307278 54.994 0.65478 58.55 58.278 58.933 3.5559 54 37 2 0 0 0 0.54078 4 11631 11631;11677;11721;11770 6.7232 1.8262 1 203010 + 52867 30104 32890 32907 60868;60869;60870;60871 60868 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MSMS UPN48_class_I_Rep_2 6 614.3121337890625 2 614.31148 1226.60841 NaN NaN NaN NaN NaN NaN NaN 50.042 1 53.737 53.237 54.237 3.6946 0 0 0 0.53105 1 10176 10176 1.4819 0 1 + 52868 30104 32890 32907 60872 60872 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 614.31201171875 2 614.31148 1226.60841 0.47206 0.00028999 -0.25921 -0.00015924 0.21285 0.00013076 614.311163038402 49.384 0.57648 53.014 52.741 53.318 3.6291 55 39 2 0 0 0 0.51003 4 9917 9865;9917;9957;9997 10.824 2.6684 1 159830 + 52869 30104 32890 32907 60873;60874;60875;60876 60874 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 614.3128051757812 2 614.31148 1226.60841 0.44156 0.00027126 0.32048 0.00019688 0.76204 0.00046813 614.3116962242656 54.994 0.5792 58.564 58.258 58.837 3.5694 55 31 2 0 0 0 0.54078 6 11563 11563;11572;11591;11625;11630;11675 6.7232 1.8262 1 176160 + 52870 30104 32890 32907 60877;60878;60879;60880;60881;60882 60877 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MSMS UPN48_class_I_Rep_3 7 614.3121337890625 2 614.31148 1226.60841 NaN NaN NaN NaN NaN NaN NaN 50.339 1 53.96 53.46 54.46 3.621 0 0 0 0.53105 1 10202 10202 6.7232 0 1 + 52871 30104 32890 32907 60883 60883 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MSMS UPN48_class_I_Rep_3 7 614.311767578125 2 614.31148 1226.60841 NaN NaN NaN NaN NaN NaN NaN 50.436 1 54.057 53.557 54.557 3.621 0 0 0 0.53105 1 10232 10232 3.5965 0 1 + 52872 30104 32890 32907 60884 60884 0.004168168803289518 VVYTHPFVEH 10 Unmodified _VVYTHPFVEH_ 0 0 0 REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense REV__L1PA7_dup4534|chr5:111711196-111717241:-|1.8646736726877944|0.0598967788305667|4.96|151.0|190|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 614.31148 1226.60841 0.40842 0.0002509 -1.264 -0.00077647 -0.85554 -0.00052557 614.3105032352911 49.42 0.078323 52.766 52.706 52.784 3.3465 -0.14545 -0.0014919 NaN 10.824 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 44357 + 52873 30104 32890 32907 0.004168168803289518 VVYVFYYF 8 Unmodified _VVYVFYYF_ 0 0 0 L1P4_dup2435|chr10:76377185-76378844:-|1.0369212129375518|0.0083456035518846|6.96|147.0|96|2|anti-sense L1P4_dup2435|chr10:76377185-76378844:-|1.0369212129375518|0.0083456035518846|6.96|147.0|96|2|anti-sense L1P4_dup2435|chr10:76377185-76378844:-|1.0369212129375518|0.0083456035518846|6.96|147.0|96|2|anti-sense MSMS UPN47_class_I_Rep_1 2 550.2778930664062 2 550.278586 1098.54262 NaN NaN NaN NaN NaN NaN NaN 91.079 1 94.784 94.284 95.284 3.7053 0 0 0 0.40738 1 22742 22742 0.79363 0 1 52874 13552 32891 32908 60885 60885 -0.0027097229458377114 VVYWFRHLIAF 11 Unmodified _VVYWFRHLIAF_ 0 0 0 REV__L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|186|3|anti-sense REV__L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|186|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 484.7879638671875 3 484.271319 1449.79213 -0.37339 -0.00018082 -0.23893 -0.00011571 -0.61232 -0.00029653 484.2712636979488 38.345 0.40467 41.586 41.487 41.892 3.2414 32 27 2 0 0 0 22.551 1 7449 7449 2.8433 0.21205 1 67286 + 52875 25312 32892 32909 60886 60886 0.08522210381852346 VVYWFRQSE 9 Unmodified _VVYWFRQSE_ 0 0 0 REV__L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|181|1|anti-sense REV__L1PA4_dup760|chr1:222869785-222874941:-|1.5495973949816269|0.1492128379734148|3.38|151.0|181|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 607.3036499023438 2 607.303655 1212.59276 0.51828 0.00031475 -0.1628 -9.8868E-05 0.35548 0.00021588 607.3033311840616 57.161 0.75541 60.655 60.374 61.129 3.4942 106 65 2 0 0 0 0.40174 1 12424 12424 7.9102 1.187 1 247020 + 52876 29677 32893 32910 60887 60887 -0.005034696367147262 VVYWRFVY 8 Unmodified _VVYWRFVY_ 0 0 0 L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|8|1|sense L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|8|1|sense L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 566.3034057617188 2 566.302927 1130.5913 NaN NaN NaN NaN NaN NaN NaN 37.512 1 41.175 40.675 41.675 3.663 0 0 0 0.40738 1 6332 6332 0.79363 0 1 52877 12547 32894 32911 60888 60888 0.031229410651803846 VVYYFRMPGT 10 Unmodified _VVYYFRMPGT_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MSMS UPN48_class_I_Rep_1 5 616.8092651367188 2 616.810259 1231.60597 NaN NaN NaN NaN NaN NaN NaN 46.602 1 50.121 49.621 50.621 3.5192 0 0 0 0.53105 1 9117 9117 1.8442 0 1 + 52878 17852 32895 32912 60889 60889 -0.0005735484899105359 VVYYKTRMDG 10 Unmodified _VVYYKTRMDG_ 0 0 0 REV__L1MC3_dup3891|chr5:59026788-59027936:-|1.10112589673502|0.0222718247086753|5.63|151.0|42|3|sense REV__L1MC3_dup3891|chr5:59026788-59027936:-|1.10112589673502|0.0222718247086753|5.63|151.0|42|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 616.31005859375 2 616.310623 1230.60669 0.42108 0.00025952 -2.7464 -0.0016926 -2.3253 -0.0014331 616.3090065413365 46.401 0.3178 49.92 49.721 50.039 3.5192 30 19 2 0 0 0 0.54822 1 9052 9052 5.7319 0.83484 1 149900 + 52879 26738 32896 32913 60890 60890 0.0006143980006072525 VVYYSRNLCP 10 Unmodified _VVYYSRNLCP_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|151|2|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|151|2|anti-sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|151|2|anti-sense MSMS UPN47_class_I_Rep_1 2 405.20452880859375 3 405.205986 1212.59613 NaN NaN NaN NaN NaN NaN NaN 56.887 1 60.344 59.844 60.844 3.4572 0 0 0 0.53105 1 13027 13027 2.086 0.17963 1 52880 9335 32897 32914 60891 60891 -0.0016654285436743521 VWACLCLLY 9 Unmodified _VWACLCLLY_ 0 0 0 L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|184|2|anti-sense L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|184|2|anti-sense L1M1_dup2982|chr5:78152141-78155522:-|1.7447290059107392|0.0466935598094632|5.22|151.0|184|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 541.766845703125 2 542.271924 1082.52929 0.38879 0.00021083 -0.62969 -0.00034146 -0.2409 -0.00013063 542.7741876191991 56.079 0.76165 59.558 59.184 59.946 3.4785 115 41 4 0 0 0 0.11775 1 12881 12881 9.3474 2.9933 1 353780 52881 8542 32898 32915 60892 60892 -0.008668696698123313 VWALRPHI 8 Unmodified _VWALRPHI_ 0 0 0 THE1C-int_dup1801|chr22:40552774-40554304:+|1.3931332462293355|0.0586765165271614|4.57|151.0|50|1|anti-sense THE1C-int_dup1801|chr22:40552774-40554304:+|1.3931332462293355|0.0586765165271614|4.57|151.0|50|1|anti-sense THE1C-int_dup1801|chr22:40552774-40554304:+|1.3931332462293355|0.0586765165271614|4.57|151.0|50|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2953796386719 2 496.295436 990.57632 0.01773 8.7995E-06 -0.1233 -6.1191E-05 -0.10556 -5.2391E-05 496.2953600758229 28.767 0.257 28.767 28.57 28.827 0 25 18 3 0 0 0 0.82752 2 4432 4432;4471 2.3027 0 1 432190 52882 32940 32899 32916 60893;60894 60893 0.08065493987828631 VWAQTLQL 8 Unmodified _VWAQTLQL_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|4|1|sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|4|1|sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 479.7637023925781 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 65.803 1 68.988 68.488 69.488 3.1853 0 0 0 0.35163 1 15828 15828 21.747 4.8044 1 52883 13813 32900 32917 60895 60895 0.047903752771503605 VWCPLITY 8 Unmodified _VWCPLITY_ 0 0 0 REV__ENST00000504776.5_1_5:98115382-98115493:+|nuORF REV__ENST00000504776.5_1_5:98115382-98115493:+|nuORF MSMS UPN46_class_I_Rep_3 1 497.7630310058594 2 497.756964 993.499375 NaN NaN NaN NaN NaN NaN NaN 78.699 1 78.699 78.199 79.199 0 0 0 0 0.40581 1 18447 18447 2.8892 0 1 + 52884 22703 32901 32918 60896 60896 0.0023651465647844816 VWDEEQVR 8 Unmodified _VWDEEQVR_ 0 0 0 ENST00000525857.1_1_11:429545-429995:-|nuORF ENST00000525857.1_1_11:429545-429995:-|nuORF ENST00000525857.1_1_11:429545-429995:-|nuORF MSMS UPN48_class_I_Rep_3 7 530.7559204101562 2 530.756538 1059.49852 NaN NaN NaN NaN NaN NaN NaN 23.657 1 27.426 26.926 27.926 3.769 0 0 0 0.40625 1 2628 2628 2.3027 0 1 52885 7258 32902 32919 60897 60897 -0.028846084588622034 VWDLICYLL 9 Unmodified _VWDLICYLL_ 0 0 0 Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|35|3|anti-sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|35|3|anti-sense Tigger2_dup2458|chr16:89375792-89376437:+|1.4963159471532363|0.029667479747969|5.66|151.0|35|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.3037719726562 2 569.304278 1136.594 -0.16099 -9.1655E-05 0.30456 0.00017339 0.14356 8.173E-05 569.304349026485 31.598 0.61172 34.897 34.631 35.243 3.2991 67 51 2 0 0 0 0.48846 1 5444 5444 1.8442 0 1 60375 52886 33302 32903 32920 60898 60898 0.03117028407837097 VWEVPQRL 8 Unmodified _VWEVPQRL_ 0 0 0 ENSG00000185386|ENST00000330651|MAPK11 ENSG00000185386|ENST00000330651|MAPK11 ENSG00000185386|ENST00000330651|MAPK11 MSMS UPN47_class_I_Rep_1 2 513.7896728515625 2 513.790184 1025.56581 NaN NaN NaN NaN NaN NaN NaN 35.002 1 38.688 38.188 39.188 3.6859 0 0 0 0.40625 1 6368 6368 2.3027 0 1 52887 5100 32904 32921 60899 60899 0.05405466542742943 VWFCHCCFGF 10 Unmodified _VWFCHCCFGF_ 0 0 0 REV__L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|191|3|anti-sense REV__L1PA4_dup581|chr1:180302604-180306261:+|1.3711685836192098|0.1237671972953552|3.47|150.0|191|3|anti-sense MSMS UPN47_class_I_Rep_2 3 416.7561340332031 3 416.831097 1247.47146 NaN NaN NaN NaN NaN NaN NaN 115.86 1 119.36 118.86 119.86 3.4965 0 0 0 0.53105 1 28266 28266 0.15932 0 1 + 52888 29655 32905 32922 60900 60900 -0.1423745486692951 VWFKKFKC 8 Unmodified _VWFKKFKC_ 0 0 0 REV__MER103C_dup6613|chr12:104484287-104484403:-|1.893386364544496|0.0061784273039208|8.26|151.0|2|2|sense REV__MER103C_dup6613|chr12:104484287-104484403:-|1.893386364544496|0.0061784273039208|8.26|151.0|2|2|sense MSMS UPN48_class_I_Rep_3 7 543.3012084960938 2 543.301873 1084.58919 NaN NaN NaN NaN NaN NaN NaN 53.867 1 57.451 56.951 57.951 3.5836 0 0 0 0.40625 1 11268 11268 2.3027 0 1 + 52889 31069 32906 32923 60901 60901 0.05028189055724397 VWFMARQIN 9 Unmodified _VWFMARQIN_ 0 0 0 Tigger1_dup169|chr1:44467510-44468238:-|8.121569075381531|0.0129291866717322|9.29|150.0|51|3|anti-sense Tigger1_dup169|chr1:44467510-44468238:-|8.121569075381531|0.0129291866717322|9.29|150.0|51|3|anti-sense Tigger1_dup169|chr1:44467510-44468238:-|8.121569075381531|0.0129291866717322|9.29|150.0|51|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 582.3013305664062 2 582.802768 1163.59098 0.39626 0.00023094 -0.10399 -6.0605E-05 0.29227 0.00017034 582.8019893133308 48.434 0.099293 51.958 51.874 51.973 3.5239 10 6 2 0 0 0 0.12444 1 9681 9681 2.0598 0.21551 1 82381 52890 33040 32907 32924 60902 60902 0.015731980736973128 VWFRIELVIQI 11 Unmodified _VWFRIELVIQI_ 0 0 0 L1PA17_dup3918|chr14:63490190-63491387:+|1.2649482969725645|0.0109815894524045|6.85|150.0|53|2|anti-sense L1PA17_dup3918|chr14:63490190-63491387:+|1.2649482969725645|0.0109815894524045|6.85|150.0|53|2|anti-sense L1PA17_dup3918|chr14:63490190-63491387:+|1.2649482969725645|0.0109815894524045|6.85|150.0|53|2|anti-sense MSMS UPN46_class_I_Rep_3 1 472.33819580078125 3 472.618495 1414.83366 NaN NaN NaN NaN NaN NaN NaN 70.626 1 70.626 70.126 71.126 0 0 0 0 0.38417 1 16238 16238 0.50596 0 1 52891 14176 32908 32925 60903 60903 0.14283346350521242 VWFWNRWW 8 Unmodified _VWFWNRWW_ 0 0 0 REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF MSMS UPN48_class_I_Rep_2 6 640.3092041015625 2 640.311618 1278.60868 NaN NaN NaN NaN NaN NaN NaN 38.264 1 41.981 41.481 42.481 3.7164 0 0 0 0.40738 1 6647 6647 0.79363 0.19213 1 + 52892 22315 32909 32926 60904 60904 -0.01947718609153526 VWGEPVLATI 10 Unmodified _VWGEPVLATI_ 0 0 0 REV__Tigger1_dup11038|chr18:172263-172915:+|1.0470211447767872|0.0330504845001908|4.99|151.0|26|1|anti-sense REV__Tigger1_dup11038|chr18:172263-172915:+|1.0470211447767872|0.0330504845001908|4.99|151.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 542.80712890625 2 542.8055 1083.59645 NaN NaN NaN NaN NaN NaN NaN 95.272 1 95.272 94.772 95.772 0 0 0 0 0.53105 1 23124 23124 1.4819 0.68827 1 + 52893 32346 32910 32927 60905 60905 0.05799200137153093 VWGEPVLATI 10 Unmodified _VWGEPVLATI_ 0 0 0 REV__Tigger1_dup11038|chr18:172263-172915:+|1.0470211447767872|0.0330504845001908|4.99|151.0|26|1|anti-sense REV__Tigger1_dup11038|chr18:172263-172915:+|1.0470211447767872|0.0330504845001908|4.99|151.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 542.80615234375 2 542.8055 1083.59645 NaN NaN NaN NaN NaN NaN NaN 95.525 1 95.525 95.025 96.025 0 0 0 0 0.53105 1 23196 23196 1.4819 0.68827 1 + 52894 32346 32910 32927 60906 60906 0.05799200137153093 VWGRDREL 8 Unmodified _VWGRDREL_ 0 0 0 nc|ENSG00000163564|Q6K0P9-6|PYHIN1;nc|ENSG00000163564|Q6K0P9-5|PYHIN1 nc|ENSG00000163564|Q6K0P9-6|PYHIN1 nc|ENSG00000163564|Q6K0P9-6|PYHIN1 MSMS UPN48_class_I_Rep_3 7 515.7747802734375 2 515.775065 1029.53558 NaN NaN NaN NaN NaN NaN NaN 41.498 1 45.144 44.644 45.644 3.6458 0 0 0 0.39242 1 7502 7502 10.824 0.75 1 52895 16735 32911 32928 60907 60907 0.021991078775499773 VWGRKVLL 8 Unmodified _VWGRKVLL_ 0 0 0 ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 MSMS UPN47_class_I_Rep_2 3 485.81195068359375 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 96.021 1 99.496 98.996 99.996 3.4753 0 0 0 0.40738 1 23615 23615 0.79363 0 1 52896 5011 32912 32929 60908 60908 0.12634951164693575 VWGWDWHT 8 Unmodified _VWGWDWHT_ 0 0 0 REV__MLT1A1-int_dup368|chr13:28166017-28167203:-|2.6427824532945285|0.0122416971845715|7.75|151.0|68|3|anti-sense REV__MLT1A1-int_dup368|chr13:28166017-28167203:-|2.6427824532945285|0.0122416971845715|7.75|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_2 6 543.743408203125 2 543.743234 1085.47191 NaN NaN NaN NaN NaN NaN NaN 19.751 1 23.4 22.9 23.9 3.6497 0 0 0 0.40738 1 1566 1566 0.79363 0 1 + 52897 31614 32913 32930 60909 60909 -0.06740252559552573 VWHLLRRE 8 Unmodified _VWHLLRRE_ 0 0 0 REV__ENST00000537834.5_1_19:40762870-40762945:-|nuORF REV__ENST00000537834.5_1_19:40762870-40762945:-|nuORF MSMS UPN48_class_I_Rep_1 5 554.8218994140625 2 554.82235 1107.63015 NaN NaN NaN NaN NaN NaN NaN 95.094 1 98.711 98.211 99.211 3.6167 0 0 0 0.40738 1 22893 22893 0.79363 0 1 + 52898 22902 32914 32931 60910 60910 0.08063666419548099 VWIKVGEA 8 Unmodified _VWIKVGEA_ 0 0 0 nc|ENSG00000101190|Q9UL49-2|TCFL5;nc|ENSG00000101190|Q9UL49-1|TCFL5;ENSG00000101190|ENST00000335351|TCFL5 nc|ENSG00000101190|Q9UL49-2|TCFL5 nc|ENSG00000101190|Q9UL49-2|TCFL5 MULTI-SECPEP UPN47_class_I_Rep_3 4 451.7765808105469 2 451.260728 900.506903 -0.71003 -0.00032041 0.34447 0.00015545 -0.36556 -0.00016496 451.26088297162227 39.821 0.43924 43.058 42.789 43.228 3.2372 41 29 2 0 0 0 0.72333 1 7837 7837 5.7604 2.8712 1 37633 52899 1554 32915 32932 60911 60911 0.05266990248424008 VWILLTVF 8 Unmodified _VWILLTVF_ 0 0 0 L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|37|3|anti-sense L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|37|3|anti-sense L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 495.8056945800781 2 495.804771 989.59499 NaN NaN NaN NaN NaN NaN NaN 85.652 1 85.652 85.152 86.152 0 0 0 0 0.40604 1 20443 20443 2.5775 0.27475 1 52900 11665 32916 32933 60912 60912 0.09977610839030149 VWIYLDVLF 9 Unmodified _VWIYLDVLF_ 0 0 0 nc|ENSG00000102468|P28223-2|HTR2A;ENSG00000102468|ENST00000542664|HTR2A nc|ENSG00000102468|P28223-2|HTR2A nc|ENSG00000102468|P28223-2|HTR2A MSMS UPN48_class_I_Rep_3 7 584.32470703125 2 584.326068 1166.63758 NaN NaN NaN NaN NaN NaN NaN 64.621 1 68.129 67.629 68.629 3.5083 0 0 0 0.36505 1 14541 14541 7.2892 0 1 52901 1615 32917 32934 60913 60913 0.06092961176591416 VWKFLPALL 9 Unmodified _VWKFLPALL_ 0 0 0 ENST00000439058.5_1_7:20259242-20259338:+|nuORF ENST00000439058.5_1_7:20259242-20259338:+|nuORF ENST00000439058.5_1_7:20259242-20259338:+|nuORF MSMS UPN47_class_I_Rep_1 2 543.8394775390625 2 543.839146 1085.66374 NaN NaN NaN NaN NaN NaN NaN 41.585 1 45.264 44.764 45.764 3.6792 0 0 0 0.40038 1 8366 8366 0.6015 0 1 52902 6767 32918 32935 60914 60914 0.12433275138755562 VWKFVLRRG 9 Unmodified _VWKFVLRRG_ 0 0 0 HAL1_dup8052|chr5:141592877-141593518:+|1.8022919706028973|0.0579361036489819|4.96|151.0|12|2|sense HAL1_dup8052|chr5:141592877-141593518:+|1.8022919706028973|0.0579361036489819|4.96|151.0|12|2|sense HAL1_dup8052|chr5:141592877-141593518:+|1.8022919706028973|0.0579361036489819|4.96|151.0|12|2|sense MSMS UPN48_class_I_Rep_1 5 580.8538208007812 2 580.856193 1159.69783 NaN NaN NaN NaN NaN NaN NaN 92.916 1 96.54 96.04 97.04 3.624 0 0 0 0.39518 1 22327 22327 1.8442 1.2427 1 52903 7912 32919 32936 60915 60915 0.12437116350361066 VWKIKNTY 8 Unmodified _VWKIKNTY_ 0 0 0 L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|27|2|anti-sense L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|27|2|anti-sense L1MC5_dup12117|chr14:96558567-96559090:-|1.214769203808401|0.3564392552515839|1.77|151.0|27|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.2938232421875 2 526.300384 1050.58622 NaN NaN NaN NaN NaN NaN NaN 51.849 1 51.849 51.349 52.349 0 0 0 0 0.40404 1 11048 11048 5.2307 0 1 52904 11664 32920 32937 60916 60916 0.06294637202563536 VWKKLIQL 8 Unmodified _VWKKLIQL_ 0 0 0 Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|50|2|sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|50|2|sense Tigger1_dup8426|chr11:6573965-6576228:-|1.2047139524276724|0.2191609580516065|2.46|151.0|50|2|sense MSMS UPN48_class_I_Rep_2 6 514.33740234375 2 514.33677 1026.65899 NaN NaN NaN NaN NaN NaN NaN 101.76 1 105.49 104.99 105.99 3.7252 0 0 0 0.40746 1 24128 24128 0.69038 0 1 52905 33200 32921 32938 60917 60917 0.14672390995997375 VWKLAPALC 9 Unmodified _VWKLAPALC_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MSMS UPN48_class_I_Rep_1 5 500.78619384765625 2 500.786056 999.557558 NaN NaN NaN NaN NaN NaN NaN 39.547 1 43.052 42.552 43.552 3.5048 0 0 0 0.381 1 6997 6997 5.2307 0 1 52906 5043 32922 32939 60918 60918 0.057761963017583184 VWKRLGAL 8 Unmodified _VWKRLGAL_ 0 0 0 nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3 nc|ENSG00000162496|O75911-2|DHRS3 nc|ENSG00000162496|O75911-2|DHRS3 MSMS UPN47_class_I_Rep_2 3 471.7967529296875 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 88.133 1 91.58 91.08 92.08 3.4471 0 0 0 0.38547 1 21915 21915 13.508 0.46542 1 52907 3935 32923 32940 60919 60919 0.10794378130617588 VWKTWLRLR 9 Unmodified _VWKTWLRLR_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MSMS UPN46_class_I_Rep_3 1 629.3834228515625 2 629.382574 1256.7506 NaN NaN NaN NaN NaN NaN NaN 20.308 1 20.308 19.808 20.808 0 0 0 0 0.4007 1 2088 2088 0.52476 0 1 + 52908 19250 32924 32941 60920 60920 0.13249074413170092 VWKTWLRLR 9 Unmodified _VWKTWLRLR_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MSMS UPN46_class_I_Rep_3 1 629.38330078125 2 629.382574 1256.7506 NaN NaN NaN NaN NaN NaN NaN 112.58 1 112.58 112.08 113.08 0 0 0 0 0.4007 1 27797 27797 0.52476 0 1 + 52909 19250 32924 32941 60921 60921 0.13249074413170092 VWKVFKKG 8 Unmodified _VWKVFKKG_ 0 0 0 Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|41|2|sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|41|2|sense Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|41|2|sense MSMS UPN48_class_I_Rep_1 5 496.3080749511719 2 496.308013 990.601472 NaN NaN NaN NaN NaN NaN NaN 81.949 1 85.525 85.025 86.025 3.5753 0 0 0 0.40738 1 19558 19558 0.79363 0 1 52910 33429 32925 32942 60922 60922 0.10579548790428817 VWLHHGIL 8 Unmodified _VWLHHGIL_ 0 0 0 L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|84|2|sense L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|84|2|sense L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|84|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 487.29315185546875 2 487.782162 973.549771 0.33588 0.00016384 2.4756 0.0012076 2.8115 0.0013714 487.7831965158331 82.166 0.057388 85.564 85.515 85.572 3.3984 10 7 2 0 0 0 0.72333 1 20470 20470 11.114 1.767 1 53043 52911 14568 32926 32943 60923 60923 0.0619380509651819 VWLHHGIL 8 Unmodified _VWLHHGIL_ 0 0 0 L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|84|2|sense L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|84|2|sense L1PA6_dup1669|chr4:118777127-118780907:-|2.468501804766551|0.1651084494191448|3.9|151.0|84|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 487.782162 973.549771 0.18957 9.2471E-05 2.5669 0.0012521 2.7565 0.0013446 487.78300508757957 82.167 0.020103 85.679 85.667 85.687 3.5122 0.057582 5.9415E-05 NaN 11.114 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 24487 52912 14568 32926 32943 0.0619380509651819 VWLLCYAI 8 Unmodified _VWLLCYAI_ 0 0 0 L1M2a_dup309|chr11:78239519-78241822:+|3.1410634343303614|0.0582609408446235|5.75|151.0|61|3|sense L1M2a_dup309|chr11:78239519-78241822:+|3.1410634343303614|0.0582609408446235|5.75|151.0|61|3|sense L1M2a_dup309|chr11:78239519-78241822:+|3.1410634343303614|0.0582609408446235|5.75|151.0|61|3|sense MSMS UPN47_class_I_Rep_2 3 490.7686767578125 2 490.767332 979.52011 NaN NaN NaN NaN NaN NaN NaN 75.685 1 79.007 78.507 79.507 3.3216 0 0 0 0.39167 1 18700 18700 11.114 3.8252 1 52913 8734 32927 32944 60924 60924 0.02953105036147008 VWLLWQTI 8 Unmodified _VWLLWQTI_ 0 0 0 HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense MSMS UPN47_class_I_Rep_3 4 529.8045043945312 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 27.936 1 31.269 30.769 31.769 3.3337 0 0 0 0.40738 1 4311 4311 0.79363 0 1 52914 7874 32928 32945 60925 60925 0.06955825207955968 VWLLWQTI 8 Unmodified _VWLLWQTI_ 0 0 0 HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_1 5 530.242431640625 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 27.796 1 31.353 30.853 31.853 3.5571 0 0 0 0.40738 1 3632 3632 0.79363 0 1 52915 7874 32928 32945 60926 60926 0.06955825207955968 VWLLWQTI 8 Unmodified _VWLLWQTI_ 0 0 0 HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 529.8057250976562 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 21.683 1 25.329 24.829 25.829 3.6459 0 0 0 0.40738 1 2092 2092 0.79363 0 1 52916 7874 32928 32945 60927 60927 0.06955825207955968 VWLLWQTI 8 Unmodified _VWLLWQTI_ 0 0 0 HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense HAL1_dup233|chr1:37577393-37578144:+|1.3974247339941972|0.1955440485660151|2.84|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8038940429688 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 23.787 1 27.556 27.056 28.056 3.769 0 0 0 0.40738 1 2665 2665 0.79363 0 1 52917 7874 32928 32945 60928 60928 0.06955825207955968 VWLPLRVPRH 10 Unmodified _VWLPLRVPRH_ 0 0 0 REV__ENSG00000175514|ENST00000312457|GPR152 REV__ENSG00000175514|ENST00000312457|GPR152 MSMS UPN47_class_I_Rep_1 2 636.8881225585938 2 636.888024 1271.7615 NaN NaN NaN NaN NaN NaN NaN 110.55 1 114.13 113.63 114.63 3.5835 0 0 0 0.53105 1 27256 27256 0.45834 0 1 + 52918 20558 32929 32946 60929 60929 0.13648476787443542 VWLVGFVLF 9 Unmodified _VWLVGFVLF_ 0 0 0 L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|112|2|anti-sense L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|112|2|anti-sense L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|112|2|anti-sense MSMS UPN48_class_I_Rep_2 6 539.9854736328125 2 540.318046 1078.62154 NaN NaN NaN NaN NaN NaN NaN 98.048 1 101.83 101.33 102.33 3.779 0 0 0 0.39326 1 23292 23292 2.3027 0 1 52919 9352 32930 32947 60930 60930 0.08537299730346604 VWLVGFVLF 9 Unmodified _VWLVGFVLF_ 0 0 0 L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|112|2|anti-sense L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|112|2|anti-sense L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|112|2|anti-sense MSMS UPN48_class_I_Rep_3 7 540.3193359375 2 540.318046 1078.62154 NaN NaN NaN NaN NaN NaN NaN 99.248 1 103.13 102.63 103.63 3.8839 0 0 0 0.39326 1 23509 23509 2.3027 0 1 52920 9352 32930 32947 60931 60931 0.08537299730346604 VWLWKENKT 9 Unmodified _VWLWKENKT_ 0 0 0 L1MC4a_dup4188|chr7:30530217-30530671:-|1.3737781769536197|0.4924926993460984|1.48|151.0|16|3|sense L1MC4a_dup4188|chr7:30530217-30530671:-|1.3737781769536197|0.4924926993460984|1.48|151.0|16|3|sense L1MC4a_dup4188|chr7:30530217-30530671:-|1.3737781769536197|0.4924926993460984|1.48|151.0|16|3|sense MSMS UPN48_class_I_Rep_3 7 602.6996459960938 2 602.329673 1202.64479 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.18 116.68 117.68 3.6568 0 0 0 0.40038 1 26996 26996 0.6015 0 1 52921 11577 32931 32948 60932 60932 0.051576937770278164 VWMKRNKY 8 Unmodified _VWMKRNKY_ 0 0 0 REV__MLT1C_dup1077|chr1:211796280-211796642:+|1.2954096990165709|0.1088909585787219|3.57|151.0|2|1|sense REV__MLT1C_dup1077|chr1:211796280-211796642:+|1.2954096990165709|0.1088909585787219|3.57|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.8053588867188 2 562.805311 1123.59607 0.4078 0.00022951 -0.72027 -0.00040537 -0.31247 -0.00017586 562.8048372804021 49.459 0.60875 52.805 52.461 53.07 3.3465 50 39 2 0 0 0 0.82752 1 10842 10842 2.3027 1.5091 1 101410 + 52922 31628 32932 32949 60933 60933 0.039215019362927706 VWMWLWLCV 9 Unmodified _VWMWLWLCV_ 0 0 0 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 MSMS UPN47_class_I_Rep_1 2 618.3099975585938 2 618.308841 1234.60313 NaN NaN NaN NaN NaN NaN NaN 52.992 1 56.551 56.051 57.051 3.5585 0 0 0 0.40038 1 11835 11835 0.6015 0 1 52923 5649 32933 32950 60934 60934 -0.004789015074948111 VWPDSKVY 8 Unmodified _VWPDSKVY_ 0 0 0 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 ENSG00000171954|ENST00000269703|CYP4F22 MSMS UPN48_class_I_Rep_3 7 497.2570495605469 2 497.255643 992.496732 NaN NaN NaN NaN NaN NaN NaN 36.295 1 39.962 39.462 40.462 3.6667 0 0 0 0.40581 1 5990 5990 2.8892 0.31174 1 52924 4553 32934 32951 60935 60935 0.00018382523182935984 VWPGLGRPL 9 Unmodified _VWPGLGRPL_ 0 0 0 ENST00000378509.8_1_7:134001717-134001771:-|nuORF ENST00000378509.8_1_7:134001717-134001771:-|nuORF ENST00000378509.8_1_7:134001717-134001771:-|nuORF MSMS UPN48_class_I_Rep_3 7 497.9481201171875 2 497.795269 993.575986 NaN NaN NaN NaN NaN NaN NaN 46.815 1 50.451 49.951 50.951 3.6363 0 0 0 0.39326 1 9122 9122 2.3027 0 1 52925 6470 32935 32952 60936 60936 0.0789407426799471 VWPKPPRRA 9 Unmodified _VWPKPPRRA_ 0 0 0 LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|1|1|sense LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|1|1|sense LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 553.8347778320312 2 553.832717 1105.65088 NaN NaN NaN NaN NaN NaN NaN 87.869 1 91.68 91.18 92.18 3.8104 0 0 0 0.39428 1 20853 20853 2.0598 0.21551 1 52926 15536 32936 32953 60937 60937 0.10228256799223345 VWPLCTARH 9 Unmodified _VWPLCTARH_ 0 0 0 MER52A_dup364|chr4:106255210-106256798:-|1.4794807071358411|0.3086819369535785|2.26|151.0|56|3|anti-sense MER52A_dup364|chr4:106255210-106256798:-|1.4794807071358411|0.3086819369535785|2.26|151.0|56|3|anti-sense MER52A_dup364|chr4:106255210-106256798:-|1.4794807071358411|0.3086819369535785|2.26|151.0|56|3|anti-sense MSMS UPN47_class_I_Rep_2 3 541.78173828125 2 541.781836 1081.54912 NaN NaN NaN NaN NaN NaN NaN 47.55 1 50.899 50.399 51.399 3.3492 0 0 0 0.38784 1 10217 10217 3.5965 1.7523 1 52927 16096 32937 32954 60938 60938 0.011606423851617365 VWPLLMTEWT 10 Unmodified _VWPLLMTEWT_ 0 0 0 REV__L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|129|3|sense REV__L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|129|3|sense MSMS UPN47_class_I_Rep_2 3 638.3258666992188 2 638.325742 1274.63693 NaN NaN NaN NaN NaN NaN NaN 59.594 1 62.867 62.367 63.367 3.2731 0 0 0 0.53105 1 13883 13883 0.45834 0 1 + 52928 29026 32938 32955 60939 60939 0.01059798465280437 VWPPPLHF 8 Unmodified _VWPPPLHF_ 0 0 0 LOR1-int_dup1002|chr13:47960815-47962686:+|1.5480409076142732|0.1189646327098816|3.7|151.0|92|1|anti-sense LOR1-int_dup1002|chr13:47960815-47962686:+|1.5480409076142732|0.1189646327098816|3.7|151.0|92|1|anti-sense LOR1-int_dup1002|chr13:47960815-47962686:+|1.5480409076142732|0.1189646327098816|3.7|151.0|92|1|anti-sense MSMS UPN48_class_I_Rep_2 6 496.7637939453125 2 496.771263 991.527973 NaN NaN NaN NaN NaN NaN NaN 49.651 1 53.345 52.845 53.845 3.6946 0 0 0 0.37152 1 10055 10055 17.087 4.555 1 52929 15495 32939 32956 60940 60940 0.031870003479411935 VWRGHLKH 8 Unmodified _VWRGHLKH_ 0 0 0 MSTD_dup5468|chr11:76079880-76080223:-|1.5491342982636789|0.0194503295608527|6.32|151.0|26|2|anti-sense MSTD_dup5468|chr11:76079880-76080223:-|1.5491342982636789|0.0194503295608527|6.32|151.0|26|2|anti-sense MSTD_dup5468|chr11:76079880-76080223:-|1.5491342982636789|0.0194503295608527|6.32|151.0|26|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.7974853515625 2 516.796135 1031.57772 NaN NaN NaN NaN NaN NaN NaN 20.114 1 23.51 23.01 24.01 3.3963 0 0 0 0.40746 1 2028 2028 0.69038 0.088878 1 52930 16599 32940 32957 60941 60941 0.06319128076597735 VWRHMWLI 8 Unmodified _VWRHMWLI_ 0 0 0 REV__ENST00000514129.5_2_4:22444476-22475438:-|nuORF REV__ENST00000514129.5_2_4:22444476-22475438:-|nuORF MSMS UPN47_class_I_Rep_3 4 570.8118286132812 2 570.810396 1139.60624 NaN NaN NaN NaN NaN NaN NaN 23.999 1 27.349 26.849 27.849 3.3509 0 0 0 0.40738 1 3147 3147 0.79363 0 1 + 52931 19698 32941 32958 60942 60942 0.04202109661537179 VWRLKMRR 8 Unmodified _VWRLKMRR_ 0 0 0 ENST00000415952.1_1_7:25021087-25021201:-|nuORF ENST00000415952.1_1_7:25021087-25021201:-|nuORF ENST00000415952.1_1_7:25021087-25021201:-|nuORF MSMS UPN46_class_I_Rep_3 1 572.8491821289062 2 572.847845 1143.68114 NaN NaN NaN NaN NaN NaN NaN 15.833 1 15.833 15.333 16.333 0 0 0 0 0.40625 1 976 976 2.3027 0 1 52932 6646 32942 32959 60943 60943 0.11504292192762477 VWRMVALL 8 Unmodified _VWRMVALL_ 0 0 0 THE1B-int_dup3193|chr11:78272172-78273733:+|2.186032039388496|0.0173047080128873|6.98|151.0|53|1|anti-sense THE1B-int_dup3193|chr11:78272172-78273733:+|2.186032039388496|0.0173047080128873|6.98|151.0|53|1|anti-sense THE1B-int_dup3193|chr11:78272172-78273733:+|2.186032039388496|0.0173047080128873|6.98|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 494.293701171875 2 494.294048 986.573543 NaN NaN NaN NaN NaN NaN NaN 53.885 1 57.467 56.967 57.967 3.5817 0 0 0 0.40581 1 11336 11336 2.8892 0 1 52933 32921 32943 32960 60944 60944 0.07971902538690756 VWRRALSE 8 Unmodified _VWRRALSE_ 0 0 0 ENSG00000123636|ENST00000392783|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-4|BAZ2B ENSG00000123636|ENST00000392783|BAZ2B ENSG00000123636|ENST00000392783|BAZ2B MSMS UPN46_class_I_Rep_3 1 508.7864685058594 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 27.345 1 27.345 26.845 27.845 0 0 0 0 0.40643 1 4049 4049 2.0598 0.86641 1 52934 2435 32944 32961 60945 60945 0.04915698257218537 VWSGHMNRK 9 Unmodified _VWSGHMNRK_ 0 0 0 L1MA9_dup11667|chr11:94614609-94615557:-|3.0075303397528472|0.4001842457986159|2.91|151.0|7|1|sense L1MA9_dup11667|chr11:94614609-94615557:-|3.0075303397528472|0.4001842457986159|2.91|151.0|7|1|sense L1MA9_dup11667|chr11:94614609-94615557:-|3.0075303397528472|0.4001842457986159|2.91|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 557.7819213867188 2 557.782367 1113.55018 NaN NaN NaN NaN NaN NaN NaN 39.384 1 43.04 42.54 43.54 3.6557 0 0 0 0.39428 1 6883 6883 2.0598 0 1 52935 10097 32945 32962 60946 60946 -0.002051432459438729 VWSYSTDTL 9 Unmodified _VWSYSTDTL_ 0 0 0 REV__L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|125|3|sense REV__L1PA6_dup3119|chr8:73568857-73574918:+|1.8779642733504085|0.0677447551134089|4.79|150.0|125|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 536.2532348632812 2 536.253297 1070.49204 0.2772 0.00014865 0.13264 7.1128E-05 0.40984 0.00021978 536.2532502025078 61.85 0.60373 61.85 61.605 62.209 0 124 56 3 0 0 0 0.12799 1 13795 13795 28.487 1.6032 1 709370 + 52936 29869 32946 32963 60947 60947 -0.04038546410242816 VWTDPAYFY 9 Unmodified _VWTDPAYFY_ 0 0 0 REV__ENSG00000261949|ENST00000610896|GFY REV__ENSG00000261949|ENST00000610896|GFY MSMS UPN47_class_I_Rep_2 3 581.266845703125 2 581.266207 1160.51786 NaN NaN NaN NaN NaN NaN NaN 45.075 1 48.431 47.931 48.931 3.3556 0 0 0 0.36505 1 9463 9463 7.2892 0 1 + 52937 21402 32947 32964 60948 60948 -0.05597652167944034 VWTIARIHF 9 Unmodified _VWTIARIHF_ 0 0 0 nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1;nc|ENSG00000114812|P32241-2|VIPR1 nc|ENSG00000114812|P32241-3|VIPR1 nc|ENSG00000114812|P32241-3|VIPR1 MSMS UPN48_class_I_Rep_3 7 571.8248291015625 2 571.827101 1141.63965 NaN NaN NaN NaN NaN NaN NaN 32.877 1 36.567 36.067 37.067 3.6896 0 0 0 0.39428 1 5042 5042 2.0598 0 1 52938 2092 32948 32965 60949 60949 0.0744943470506314 VWVAWPIP 8 Unmodified _VWVAWPIP_ 0 0 0 REV__L1MEf_dup4792|chr7:5343962-5344139:+|1.5323733014599688|0.0045184991172822|8.41|151.0|2|1|sense REV__L1MEf_dup4792|chr7:5343962-5344139:+|1.5323733014599688|0.0045184991172822|8.41|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 484.7384338378906 2 484.273638 966.532724 NaN NaN NaN NaN NaN NaN NaN 30.004 1 30.004 29.504 30.504 0 0 0 0 0.40581 1 4827 4827 2.8892 0.31174 1 + 52939 28646 32949 32966 60950 60950 0.048118844906980485 VWVFLYKLKR 10 Unmodified _VWVFLYKLKR_ 0 0 0 REV__HERVH-int_dup3617|chrX:71268481-71269610:+|1.427362471674382|0.1470906914111404|3.28|151.0|23|3|sense REV__HERVH-int_dup3617|chrX:71268481-71269610:+|1.427362471674382|0.1470906914111404|3.28|151.0|23|3|sense MSMS UPN48_class_I_Rep_3 7 451.2802429199219 3 451.279814 1350.81761 NaN NaN NaN NaN NaN NaN NaN 65.311 1 68.818 68.318 69.318 3.5077 0 0 0 0.53105 1 14749 14749 0.15932 0 1 + 52940 23669 32950 32967 60951 60951 0.15623684904244328 VWVFWAHH 8 Unmodified _VWVFWAHH_ 0 0 0 ENST00000374274.7_2_X:70280209-70280344:-|nuORF;ENST00000490561.6_1_X:70280209-70288156:-|nuORF ENST00000374274.7_2_X:70280209-70280344:-|nuORF ENST00000374274.7_2_X:70280209-70280344:-|nuORF MSMS UPN48_class_I_Rep_2 6 541.3060913085938 2 541.271961 1080.52937 NaN NaN NaN NaN NaN NaN NaN 38.484 1 42.2 41.7 42.7 3.7164 0 0 0 0.40738 1 6714 6714 0.79363 0.10326 1 52941 6428 32951 32968 60952 60952 -0.007673655632970622 VWVHNQSR 8 Unmodified _VWVHNQSR_ 0 0 0 ENST00000229955.3_1_6:97246777-97247002:-|nuORF ENST00000229955.3_1_6:97246777-97247002:-|nuORF ENST00000229955.3_1_6:97246777-97247002:-|nuORF MSMS UPN47_class_I_Rep_1 2 513.2677612304688 2 513.267407 1024.52026 NaN NaN NaN NaN NaN NaN NaN 24.259 1 27.989 27.489 28.489 3.7298 0 0 0 0.40738 1 3140 3140 0.79363 0 1 52942 5882 32952 32969 60953 60953 0.008982410803582752 VWVHRDLR 8 Unmodified _VWVHRDLR_ 0 0 0 L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|12|1|sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|12|1|sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 541.0425415039062 2 540.8067 1079.59885 NaN NaN NaN NaN NaN NaN NaN 51.342 1 54.867 54.367 55.367 3.5246 0 0 0 0.40738 1 10579 10579 0.79363 0 1 52943 13770 32953 32970 60954 60954 0.06223093385460743 VWVLKSYLL 9 Unmodified _VWVLKSYLL_ 0 0 0 L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|170|3|anti-sense L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|170|3|anti-sense L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|170|3|anti-sense MSMS UPN47_class_I_Rep_1 2 560.8427734375 2 560.841885 1119.66922 NaN NaN NaN NaN NaN NaN NaN 79.304 1 82.749 82.249 83.249 3.4456 0 0 0 0.40038 1 19755 19755 0.6015 0 1 52944 8553 32954 32971 60955 60955 0.11416953930574891 VWVLYSDI 8 Unmodified _VWVLYSDI_ 0 0 0 L1MC3_dup11775|chr17:64622199-64623175:-|1.4389469891321198|0.0332375255109779|5.44|151.0|30|3|sense L1MC3_dup11775|chr17:64622199-64623175:-|1.4389469891321198|0.0332375255109779|5.44|151.0|30|3|sense L1MC3_dup11775|chr17:64622199-64623175:-|1.4389469891321198|0.0332375255109779|5.44|151.0|30|3|sense MSMS UPN47_class_I_Rep_2 3 497.76416015625 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 32.139 1 35.608 35.108 36.108 3.4691 0 0 0 0.40738 1 5530 5530 0.79363 0 1 52945 11304 32955 32972 60956 60956 0.02011553182978787 VWVLYSDI 8 Unmodified _VWVLYSDI_ 0 0 0 L1MC3_dup11775|chr17:64622199-64623175:-|1.4389469891321198|0.0332375255109779|5.44|151.0|30|3|sense L1MC3_dup11775|chr17:64622199-64623175:-|1.4389469891321198|0.0332375255109779|5.44|151.0|30|3|sense L1MC3_dup11775|chr17:64622199-64623175:-|1.4389469891321198|0.0332375255109779|5.44|151.0|30|3|sense MSMS UPN48_class_I_Rep_3 7 497.76544189453125 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 18.876 1 22.464 21.964 22.964 3.5874 0 0 0 0.40738 1 1324 1324 0.79363 0 1 52946 11304 32955 32972 60957 60957 0.02011553182978787 VWVPTLTF 8 Unmodified _VWVPTLTF_ 0 0 0 ENST00000407418.7_1_22:39259026-39259239:-|nuORF ENST00000407418.7_1_22:39259026-39259239:-|nuORF ENST00000407418.7_1_22:39259026-39259239:-|nuORF MSMS UPN48_class_I_Rep_2 6 482.0225524902344 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 25.654 1 29.287 28.787 29.787 3.6332 0 0 0 0.40738 1 3153 3153 0.79363 0 1 52947 6614 32956 32973 60958 60958 0.045001609082419236 VWVRAGHR 8 Unmodified _VWVRAGHR_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MSMS UPN47_class_I_Rep_2 3 490.7811279296875 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 111.19 1 114.72 114.22 115.22 3.5271 0 0 0 0.40738 1 27062 27062 0.79363 0 1 52948 1229 32957 32974 60959 60959 0.05582555042508375 VWVYLICY 8 Unmodified _VWVYLICY_ 0 0 0 REV__L1MA10_dup1281|chr4:174290154-174291782:-|1.7672423148862386|0.045326739838862|5.28|151.0|62|1|anti-sense REV__L1MA10_dup1281|chr4:174290154-174291782:-|1.7672423148862386|0.045326739838862|5.28|151.0|62|1|anti-sense MSMS UPN47_class_I_Rep_3 4 529.7726440429688 2 529.772614 1057.53067 NaN NaN NaN NaN NaN NaN NaN 25.623 1 28.974 28.474 29.474 3.3509 0 0 0 0.40581 1 3630 3630 2.8892 0 1 + 52949 24810 32958 32975 60960 60960 0.004210876905972327 VWWFLKKL 8 Unmodified _VWWFLKKL_ 0 0 0 L1MB3_dup2927|chr3:25748900-25749436:+|1.88503774182173|0.0689866691386247|4.77|151.0|4|1|sense;L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|23|3|sense;L1MB3_dup4201|chr4:82835870-82836092:+|1.5061436582085932|0.1687415011074731|3.16|151.0|9|3|sense;L1MB3_dup2548|chr2:197258399-197258841:-|2.87789397826424|0.1035068756078271|4.8|151.0|12|2|sense;L1MB4_dup4300|chr9:77722944-77723429:+|1.6290882784892826|0.051106557850267|4.99|151.0|10|2|sense;L1MB4_dup5171|chrX:154692810-154693261:+|1.05237688339488|0.0180378795672271|5.87|149.0|12|3|sense;L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|83|2|sense L1MB3_dup2927|chr3:25748900-25749436:+|1.88503774182173|0.0689866691386247|4.77|151.0|4|1|sense L1MB3_dup2927|chr3:25748900-25749436:+|1.88503774182173|0.0689866691386247|4.77|151.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 560.3406372070312 2 560.339313 1118.66407 0.49458 0.00027713 1.8878 0.0010578 2.3824 0.0013349 560.3403435867339 95.088 0.12865 98.869 98.796 98.924 3.7804 28 18 2 0 0 0 0.82752 1 22599 22599 0.79363 0 1 93685 52950 10278 32959 32976 60961 60961 0.10948694858598174 VWWFLKKLKI 10 Unmodified _VWWFLKKLKI_ 0 0 0 L1MB3_dup2927|chr3:25748900-25749436:+|1.88503774182173|0.0689866691386247|4.77|151.0|4|1|sense;L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|23|3|sense L1MB3_dup2927|chr3:25748900-25749436:+|1.88503774182173|0.0689866691386247|4.77|151.0|4|1|sense L1MB3_dup2927|chr3:25748900-25749436:+|1.88503774182173|0.0689866691386247|4.77|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 454.28729248046875 3 454.28831 1359.8431 NaN NaN NaN NaN NaN NaN NaN 22.176 1 25.729 25.229 26.229 3.5533 0 0 0 0.53105 1 2132 2132 0.15932 0.01943 1 52951 10278 32960 32977 60962 60962 0.1775715942669649 VWWGVLFW 8 Unmodified _VWWGVLFW_ 0 0 0 REV__nc|ENSG00000143575|O00165-4|HAX1 REV__nc|ENSG00000143575|O00165-4|HAX1 MSMS UPN47_class_I_Rep_1 2 546.7876586914062 2 546.786913 1091.55927 NaN NaN NaN NaN NaN NaN NaN 24.385 1 28.115 27.615 28.615 3.7298 0 0 0 0.40738 1 3177 3177 0.79363 0 1 + 52952 22854 32961 32978 60963 60963 0.01715573382034563 VWWHWISHC 9 Unmodified _VWWHWISHC_ 0 0 0 L1MEc_dup10574|chr9:137806733-137807469:-|1.2031340944566606|0.1549503162483933|2.96|151.0|8|1|sense L1MEc_dup10574|chr9:137806733-137807469:-|1.2031340944566606|0.1549503162483933|2.96|151.0|8|1|sense L1MEc_dup10574|chr9:137806733-137807469:-|1.2031340944566606|0.1549503162483933|2.96|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 627.2887573242188 2 627.287285 1252.56002 NaN NaN NaN NaN NaN NaN NaN 26.699 1 30.047 29.547 30.547 3.3478 0 0 0 0.40038 1 3945 3945 0.6015 0 1 52953 12998 32962 32979 60964 60964 -0.056159552405461 VWWKCKKW 8 Unmodified _VWWKCKKW_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MSMS UPN48_class_I_Rep_1 5 582.3133544921875 2 582.312772 1162.61099 NaN NaN NaN NaN NaN NaN NaN 53.811 1 57.326 56.826 57.826 3.5143 0 0 0 0.40746 1 11332 11332 0.69038 0.088878 1 52954 2812 32963 32980 60965 60965 0.036189938042753056 VWWLLFIKT 9 Unmodified _VWWLLFIKT_ 0 0 0 Kanga2_a_dup752|chr8:27338552-27338836:-|1.7135806751967504|0.0053168881611155|8.33|151.0|19|3|anti-sense Kanga2_a_dup752|chr8:27338552-27338836:-|1.7135806751967504|0.0053168881611155|8.33|151.0|19|3|anti-sense Kanga2_a_dup752|chr8:27338552-27338836:-|1.7135806751967504|0.0053168881611155|8.33|151.0|19|3|anti-sense MSMS UPN47_class_I_Rep_2 3 603.3555908203125 2 603.357702 1204.70085 NaN NaN NaN NaN NaN NaN NaN 77.205 1 80.537 80.037 81.037 3.3315 0 0 0 0.40038 1 19140 19140 0.6015 0.076735 1 52955 8470 32964 32981 60966 60966 0.10668946684495495 VWWPFPIL 8 Unmodified _VWWPFPIL_ 0 0 0 REV__Charlie2a_dup1910|chr16:88947942-88948269:-|1.1169189202663568|0.0699917356043459|4.0|150.0|25|3|anti-sense REV__Charlie2a_dup1910|chr16:88947942-88948269:-|1.1169189202663568|0.0699917356043459|4.0|150.0|25|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 529.2973022460938 2 529.297114 1056.57967 0.52783 0.00027938 1.02 0.00053988 1.5478 0.00081925 529.2975807982295 56.573 0.57645 60.106 59.783 60.36 3.5333 69 51 2 0 0 0 0.82752 1 12130 12130 6.3541 0 1 161110 + 52956 17370 32965 32982 60967 60967 0.0536474404184446 VWYANYLK 8 Unmodified _VWYANYLK_ 0 0 0 L1MB8_dup3849|chr4:76122606-76123234:+|1.8682141995036792|0.2487029172647672|2.91|151.0|10|1|sense L1MB8_dup3849|chr4:76122606-76123234:+|1.8682141995036792|0.2487029172647672|2.91|151.0|10|1|sense L1MB8_dup3849|chr4:76122606-76123234:+|1.8682141995036792|0.2487029172647672|2.91|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 528.7791748046875 2 528.779285 1055.54402 NaN NaN NaN NaN NaN NaN NaN 113.07 1 116.58 116.08 117.08 3.5171 0 0 0 0.40738 1 27485 27485 0.79363 0 1 52957 10994 32966 32983 60968 60968 0.01846661794161264 VWYFYLAVF 9 Unmodified _VWYFYLAVF_ 0 0 0 L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|67|2|anti-sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|67|2|anti-sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_1 5 604.3089599609375 2 604.312961 1206.61137 NaN NaN NaN NaN NaN NaN NaN 69.608 1 73.063 72.563 73.563 3.4548 0 0 0 0.39326 1 16161 16161 2.3027 0 1 52958 8673 32967 32984 60969 60969 0.016326920051142224 VWYFYLAVF 9 Unmodified _VWYFYLAVF_ 0 0 0 L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|67|2|anti-sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|67|2|anti-sense L1M2_dup234|chr1:100005057-100006760:-|1.2348258235728713|0.1662851987912586|2.89|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_1 5 604.3106079101562 2 604.312961 1206.61137 NaN NaN NaN NaN NaN NaN NaN 69.744 1 73.199 72.699 73.699 3.4548 0 0 0 0.381 1 16201 16201 5.2307 0 1 52959 8673 32967 32984 60970 60970 0.016326920051142224 VWYRLTNFF 9 Unmodified _VWYRLTNFF_ 0 0 0 REV__L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|70|2|anti-sense REV__L1MEc_dup4361|chr3:190632141-190633367:-|1.8442074979329508|0.0742873903319833|4.63|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_1 5 623.6757202148438 2 623.324391 1244.63423 NaN NaN NaN NaN NaN NaN NaN 85.904 1 89.51 89.01 90.01 3.6059 0 0 0 0.39428 1 20566 20566 2.0598 0.21551 1 + 52960 28453 32968 32985 60971 60971 0.021697111225876142 VWYWFWVFVC 10 Unmodified _VWYWFWVFVC_ 0 0 0 REV__L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|164|1|anti-sense REV__L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|164|1|anti-sense MSMS UPN47_class_I_Rep_1 2 478.8951416015625 3 478.894972 1433.66309 NaN NaN NaN NaN NaN NaN NaN 36.237 1 39.906 39.406 40.406 3.6692 0 0 0 0.53105 1 6741 6741 0.77653 0.078866 1 + 52961 25016 32969 32986 60972 60972 -0.03639887572626321 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MSMS UPN48_class_I_Rep_2 6 524.804443359375 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.29 1 62.776 62.276 63.276 3.4868 0 0 0 0.098423 1 12992 12992 24.991 3.454 1 52962 3038 32970 32987 60973 60973 0.07455200137110296 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MSMS UPN48_class_I_Rep_2 6 524.8058471679688 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.306 1 62.792 62.292 63.292 3.4868 0 0 0 0.27207 1 12997 12997 12.241 0.74595 1 52963 3038 32970 32987 60974 60974 0.07455200137110296 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MSMS UPN48_class_I_Rep_2 6 524.791015625 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.463 1 62.95 62.45 63.45 3.4868 0 0 0 0.20399 1 13046 13046 16.149 0.90062 1 52964 3038 32970 32987 60975 60975 0.07455200137110296 VYADQPHIF 9 Unmodified _VYADQPHIF_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS UPN48_class_I_Rep_2 6 545.272216796875 2 545.271824 1088.5291 0.44254 0.0002413 -0.19905 -0.00010854 0.24349 0.00013277 545.2717954659222 49.97 0.54483 53.665 53.352 53.897 3.6946 58 35 2 0 0 0 0.10568 2 10094 10094;10108 32.786 14.639 1 168660 52965 1507 32971 32988 60976;60977 60976 -0.011628300738266262 VYADQPHIF 9 Unmodified _VYADQPHIF_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS UPN48_class_I_Rep_3 7 545.2723999023438 2 545.271824 1088.5291 0.37488 0.00020441 0.017712 9.658E-06 0.3926 0.00021407 545.2719933797983 50.077 0.5699 53.698 53.439 54.009 3.621 51 34 2 0 0 0 0.10568 2 10096 10096;10139 32.786 14.639 1 175460 52966 1507 32971 32988 60978;60979 60978 -0.011628300738266262 VYADVLCYIL 10 Unmodified _VYADVLCYIL_ 0 0 0 L1MB4_dup3445|chr7:75089909-75090538:-|1.7341775002963773|0.1828363140659351|3.25|151.0|46|3|anti-sense;L1MB4_dup3428|chr7:74853598-74854227:+|1.5973470578528437|0.1857045057646151|3.1|151.0|46|3|anti-sense L1MB4_dup3445|chr7:75089909-75090538:-|1.7341775002963773|0.1828363140659351|3.25|151.0|46|3|anti-sense L1MB4_dup3445|chr7:75089909-75090538:-|1.7341775002963773|0.1828363140659351|3.25|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.3074951171875 2 586.307018 1170.59948 NaN NaN NaN NaN NaN NaN NaN 32.894 1 36.421 35.921 36.921 3.5266 0 0 0 0.53105 1 5061 5061 1.8442 0 1 52967 10501 32972 32989 60980 60980 0.02100707199633689 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 545.2666015625 2 545.266207 1088.51786 0.45092 0.00024587 0.090594 4.9398E-05 0.54151 0.00029527 545.2663996761166 81.233 0.58498 84.795 84.503 85.088 3.5624 153 70 3 0 0 0 2.4394E-05 2 19341 19341;19376 158.2 90.859 1 334810 52968 1699 32973 32990 60981;60982 60981 -0.02285652167961416 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 545.2666625976562 2 545.266207 1088.51786 0.48142 0.0002625 0.11587 6.3181E-05 0.5973 0.00032569 545.266372168252 81.095 0.2337 84.752 84.549 84.783 3.6567 62 30 3 0 0 0 2.4394E-05 1 19242 19242 158.2 90.859 1 387960 52969 1699 32973 32990 60983 60983 -0.02285652167961416 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 545.2667846679688 2 545.266207 1088.51786 0.48158 0.00026259 0.057719 3.1472E-05 0.5393 0.00029406 545.2663663842624 81.227 0.28324 84.884 84.776 85.059 3.6567 84 36 3 0 0 0 0.0083901 1 19275 19275 144.35 86.879 1 558020 52970 1699 32973 32990 60984 60984 -0.02285652167961416 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 545.2662963867188 2 545.266207 1088.51786 0.51342 0.00027995 0.079539 4.337E-05 0.59296 0.00032332 545.2663199674456 81.227 0.50128 84.912 84.521 85.022 3.6851 124 63 3 0 0 0 0.0051528 2 19213 19183;19213 131.27 81.335 1 448630 52971 1699 32973 32990 60985;60986 60986 -0.02285652167961416 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF;nc|ENSG00000104731|Q8TBB5-3|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 545.3169555664062 2 545.266207 1088.51786 0.51219 0.00027928 0.10774 5.8748E-05 0.61993 0.00033803 545.7674400676285 81.395 0.16974 85.08 85.022 85.192 3.6851 45 21 3 0 0 0 4.4247E-05 1 19278 19278 78.728 46.423 1 147700 52972 1699 32973 32990 60987 60987 -0.02285652167961416 VYAFSIENF 9 Unmodified _VYAFSIENF_ 0 0 0 ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS ENST00000528557.5_1_1:26759436-26769365:+|nuORF ENST00000528557.5_1_1:26759436-26769365:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 545.266845703125 2 545.266207 1088.51786 0.45227 0.00024661 0.33781 0.0001842 0.79008 0.00043081 545.2664486195929 79.936 0.33303 83.485 83.17 83.503 3.5487 74 42 2 0 0 0 0.0013614 2 19095 19067;19095 152.41 56.127 1 650710 52973 2229 32974 32991 60988;60989 60989 -0.02285652167961416 VYAFSIENF 9 Unmodified _VYAFSIENF_ 0 0 0 ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS ENST00000528557.5_1_1:26759436-26769365:+|nuORF ENST00000528557.5_1_1:26759436-26769365:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 545.26708984375 2 545.266207 1088.51786 0.48077 0.00026215 0.21264 0.00011594 0.69341 0.00037809 545.2663816648446 79.882 0.40071 83.526 83.155 83.555 3.6446 84 50 2 0 0 0 0.00033249 3 18968 18935;18968;18991 166.45 58.451 1 725240 52974 2229 32974 32991 60990;60991;60992 60991 -0.02285652167961416 VYAFSIENF 9 Unmodified _VYAFSIENF_ 0 0 0 ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS ENST00000528557.5_1_1:26759436-26769365:+|nuORF ENST00000528557.5_1_1:26759436-26769365:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 545.2665405273438 2 545.266207 1088.51786 0.51826 0.00028259 0.50331 0.00027444 1.0216 0.00055703 545.2665901481446 79.809 0.31405 83.451 83.175 83.489 3.6423 68 41 2 0 0 0 0.011492 2 18914 18879;18914 142.08 67.151 1 789870 52975 2229 32974 32991 60993;60994 60994 -0.02285652167961416 VYAHALVEFR 10 Unmodified _VYAHALVEFR_ 0 0 0 REV__L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|162|3|anti-sense REV__L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|162|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 602.82763671875 2 602.827298 1203.64004 0.60735 0.00036613 -0.22999 -0.00013865 0.37736 0.00022748 602.8271219152726 55.784 0.83109 59.34 58.989 59.82 3.5559 84 58 2 0 0 0 0.52562 1 12030 12030 8.7454 0 1 291830 + 52976 29682 32975 32992 60995 60995 0.04636809634234851 VYAHALVLV 9 Unmodified _VYAHALVLV_ 0 0 0 REV__L1PA4_dup3285|chr4:139707051-139708660:-|1.4289322940148397|0.2401590248659717|2.57|151.0|57|1|anti-sense REV__L1PA4_dup3285|chr4:139707051-139708660:-|1.4289322940148397|0.2401590248659717|2.57|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_1 2 492.7977294921875 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 38.839 1 42.504 42.004 43.004 3.6652 0 0 0 0.39326 1 7530 7530 2.3027 0 1 + 52977 29626 32976 32993 60996 60996 0.08795538690878857 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS UPN48_class_I_Rep_1 5 493.787841796875 2 493.78711 985.559667 0.25076 0.00012382 0.2133 0.00010532 0.46406 0.00022915 493.78722131599716 56.493 0.64735 59.994 59.7 60.347 3.5014 84 53 2 0 0 0 0.045397 2 12193 12193;12232 50.855 14.811 1 507090 52978 1593 32977 32994 60997;60998 60997 0.06630948311226348 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS UPN48_class_I_Rep_2 6 493.7879638671875 2 493.78711 985.559667 0.3857 0.00019045 0.30141 0.00014883 0.68711 0.00033928 493.78730433488545 56.458 0.62674 59.992 59.656 60.282 3.5333 85 54 2 0 0 0 0.045397 2 12151 12103;12151 50.855 14.811 1 240070 52979 1593 32977 32994 60999;61000 61000 0.06630948311226348 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS UPN48_class_I_Rep_3 7 493.7870788574219 2 493.78711 985.559667 0.14892 7.3537E-05 0.29053 0.00014346 0.43945 0.000217 493.78726185670564 56.372 0.76396 59.914 59.543 60.307 3.5427 107 71 2 0 0 0 0.013968 2 12054 12009;12054 67.344 22.937 1 205450 52980 1593 32977 32994 61001;61002 61002 0.06630948311226348 VYAQVARLF 9 Unmodified _VYAQVARLF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS UPN48_class_I_Rep_1 5 533.805908203125 2 533.805834 1065.59712 0.49068 0.00026193 -0.18061 -9.6412E-05 0.31007 0.00016552 533.8057355147798 59.89 0.80471 63.371 63.036 63.841 3.4801 165 58 3 0 0 0 0.0052487 5 13192 13156;13192;13232;13274;13315 128.37 57.232 1 902270 52981 4418 32978 32995 61003;61004;61005;61006;61007 61004 0.06694039576836985 VYAQVARLF 9 Unmodified _VYAQVARLF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS UPN48_class_I_Rep_2 6 533.805908203125 2 533.805834 1065.59712 0.51567 0.00027527 -0.21661 -0.00011563 0.29906 0.00015964 533.8056956461104 59.98 0.92932 63.467 62.986 63.916 3.4868 188 75 3 0 0 0 0.0052487 6 13125 13082;13125;13165;13207;13246;13284 115.69 51.456 1 853980 52982 4418 32978 32995 61008;61009;61010;61011;61012;61013 61009 0.06694039576836985 VYAQVARLF 9 Unmodified _VYAQVARLF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS UPN48_class_I_Rep_3 7 533.8059692382812 2 533.805834 1065.59712 0.50688 0.00027057 -0.20355 -0.00010866 0.30332 0.00016192 533.8057515076687 59.678 0.86956 63.195 62.87 63.739 3.5169 155 70 4 0 0 0 0.006343 5 12997 12997;13035;13075;13115;13152 115.69 51.456 1 845250 52983 4418 32978 32995 61014;61015;61016;61017;61018 61014 0.06694039576836985 VYATLRVLS 9 Unmodified _VYATLRVLS_ 0 0 0 ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1;nc|ENSG00000173662|Q7RTX1-3|TAS1R1;nc|ENSG00000173662|Q7RTX1-4|TAS1R1 ENSG00000173662|ENST00000333172|TAS1R1 ENSG00000173662|ENST00000333172|TAS1R1 MSMS UPN47_class_I_Rep_2 3 511.3063049316406 2 511.305667 1020.59678 NaN NaN NaN NaN NaN NaN NaN 62.685 1 65.941 65.441 66.441 3.2558 0 0 0 0.078496 1 14820 14820 29.082 0.59474 1 52984 4642 32979 32996 61019 61019 0.08730619856999056 VYATLRVLS 9 Unmodified _VYATLRVLS_ 0 0 0 ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1;nc|ENSG00000173662|Q7RTX1-3|TAS1R1;nc|ENSG00000173662|Q7RTX1-4|TAS1R1 ENSG00000173662|ENST00000333172|TAS1R1 ENSG00000173662|ENST00000333172|TAS1R1 MULTI-MSMS UPN47_class_I_Rep_3 4 511.30706787109375 2 511.305667 1020.59678 0.23157 0.00011841 0.62758 0.00032088 0.85915 0.00043929 511.30590924665967 62.565 1.2922 65.734 65.255 66.547 3.1698 131 82 3 0 0 0 0.24936 2 14916 14916;15055 17.113 3.2068 1 292390 52985 4642 32979 32996 61020;61021 61020 0.08730619856999056 VYAVIENLK 9 Unmodified _VYAVIENLK_ 0 0 0 L1MC5a_dup9819|chrX:74248583-74248927:-|2.7414737392598685|0.2305825706827126|3.57|151.0|8|2|sense L1MC5a_dup9819|chrX:74248583-74248927:-|2.7414737392598685|0.2305825706827126|3.57|151.0|8|2|sense L1MC5a_dup9819|chrX:74248583-74248927:-|2.7414737392598685|0.2305825706827126|3.57|151.0|8|2|sense MSMS UPN48_class_I_Rep_1 5 524.804931640625 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.604 1 63.084 62.584 63.584 3.4801 0 0 0 0.31276 1 13111 13111 10.074 0.72649 1 52986 11777 32980 32997 61022 61022 0.07455200137110296 VYCCCCCCCF 10 Unmodified _VYCCCCCCCF_ 0 0 0 REV__L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|181|2|anti-sense REV__L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|181|2|anti-sense MSMS UPN46_class_I_Rep_3 1 575.1459350585938 2 575.144783 1148.27501 NaN NaN NaN NaN NaN NaN NaN 103.78 1 103.78 103.28 104.28 0 0 0 0 0.53105 1 25322 25322 0 0 1 + 52987 30367 32981 32998 61023 61023 -0.2931941041049413 VYCCCCCCCF 10 Unmodified _VYCCCCCCCF_ 0 0 0 REV__L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|181|2|anti-sense REV__L1PB1_dup2330|chr3:105406507-105409713:+|6.874028886716965|0.0409182035405892|7.39|151.0|181|2|anti-sense MSMS UPN46_class_I_Rep_3 1 575.1456909179688 2 575.144783 1148.27501 NaN NaN NaN NaN NaN NaN NaN 104.13 1 104.13 103.63 104.63 0 0 0 0 0.53105 1 25427 25427 0 0 1 + 52988 30367 32981 32998 61024 61024 -0.2931941041049413 VYDCLPSVCL 10 Unmodified _VYDCLPSVCL_ 0 0 0 L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|255|3|anti-sense L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|255|3|anti-sense L1MA3_dup117|chr1:67032686-67037261:-|5.797273701357631|0.04791765440203|6.92|151.0|255|3|anti-sense MSMS UPN48_class_I_Rep_1 5 556.2633056640625 2 556.261753 1110.50895 NaN NaN NaN NaN NaN NaN NaN 67.975 1 71.427 70.927 71.927 3.4517 0 0 0 0.53105 1 15665 15665 6.7232 0 1 52989 9463 32982 32999 61025 61025 -0.04188085120290452 VYDEQAFLE 9 Unmodified _VYDEQAFLE_ 0 0 0 REV__MER83_dup318|chr12:104608241-104608662:+|4.237465534574074|0.0100164973366534|8.72|151.0|23|2|anti-sense REV__MER83_dup318|chr12:104608241-104608662:+|4.237465534574074|0.0100164973366534|8.72|151.0|23|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 557.25830078125 2 557.258579 1112.50261 0.39444 0.00021981 0.099577 5.549E-05 0.49402 0.0002753 557.2584826746545 57.396 0.43045 60.833 60.678 61.109 3.437 64 40 2 0 0 0 0.49187 1 13182 13182 1.4819 0 1 90528 + 52990 31565 32983 33000 61026 61026 -0.04914563755801282 VYDFYTEIQ 9 Unmodified _VYDFYTEIQ_ 0 0 0 L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|52|3|sense L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|52|3|sense L1ME3_dup6554|chr12:94314703-94316453:-|1.24049861132826|0.289095522247802|2.1|151.0|52|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 589.2744140625 2 589.274229 1176.53391 0.36577 0.00021554 -0.02524 -1.4873E-05 0.34053 0.00020067 589.2739778714516 70.91 0.75927 74.282 73.949 74.708 3.3713 175 67 3 0 0 0 0.33654 1 17309 17309 11.64 0.81637 1 499740 52991 12601 32984 33001 61027 61027 -0.04729990721716604 VYDPDKYI 8 Unmodified _VYDPDKYI_ 0 0 0 REV__ENSG00000128052|ENST00000263923|KDR REV__ENSG00000128052|ENST00000263923|KDR MULTI-SECPEP UPN48_class_I_Rep_3 7 507.32666015625 2 506.752933 1011.49131 0.19041 9.6492E-05 -0.46491 -0.0002356 -0.2745 -0.0001391 507.25406155612336 44.162 0.46294 47.801 47.629 48.092 3.6385 51 30 2 0 0 0 0.72333 1 8267 8267 2.3027 2.3027 1 104150 + 52992 18892 32985 33002 61028 61028 -0.013973410593052904 VYDQPVFPTP 10 Unmodified _VYDQPVFPTP_ 0 0 0 L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|275|2|anti-sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|275|2|anti-sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|275|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.7923583984375 2 581.792589 1161.57063 0.35524 0.00020667 -0.34995 -0.0002036 0.0052891 3.0772E-06 581.7922518408885 70.899 0.71987 74.27 74.023 74.743 3.3713 113 64 2 0 0 0 0.52562 1 17293 17293 8.7454 0.15213 1 289560 52993 14756 32986 33003 61029 61029 -0.003696941051430258 VYDQYFITL 9 Unmodified _VYDQYFITL_ 0 0 0 ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 MULTI-MSMS UPN48_class_I_Rep_2 6 581.7969970703125 2 581.294965 1160.57538 0.47678 0.00027715 -0.28816 -0.00016751 0.18862 0.00010964 581.2948254289576 82.304 0.20792 85.973 85.912 86.12 3.669 42 24 2 0 0 0 0.14474 1 19575 19575 26.021 1.0297 1 100170 52994 3308 32987 33004 61030 61030 0.0015119003760446503 VYDQYFITL 9 Unmodified _VYDQYFITL_ 0 0 0 ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 581.294965 1160.57538 0.42592 0.00024758 0.35537 0.00020658 0.78129 0.00045416 581.2954125636512 82.65 0.043411 86.225 86.198 86.241 3.5753 0.13985 0.00036023 NaN 26.021 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 50716 52995 3308 32987 33004 0.0015119003760446503 VYDQYFITL 9 Unmodified _VYDQYFITL_ 0 0 0 ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 581.294965 1160.57538 0.52084 0.00030276 0.6436 0.00037412 1.1644 0.00067688 581.7970628995672 82.352 0.023758 86.058 86.047 86.071 3.7066 -0.027133 0.00069532 NaN 26.021 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 64300 52996 3308 32987 33004 0.0015119003760446503 VYDVHVHYE 9 Unmodified _VYDVHVHYE_ 0 0 0 L1ME4b_dup18106|chr16:23916445-23916766:-|1.4365071337252082|0.0053020198316422|8.08|151.0|10|3|sense L1ME4b_dup18106|chr16:23916445-23916766:-|1.4365071337252082|0.0053020198316422|8.08|151.0|10|3|sense L1ME4b_dup18106|chr16:23916445-23916766:-|1.4365071337252082|0.0053020198316422|8.08|151.0|10|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.274169921875 2 580.772188 1159.52982 0.45102 0.00026194 -0.51849 -0.00030112 -0.067473 -3.9187E-05 580.7718269537177 35.641 0.67733 39.151 38.91 39.588 3.5101 103 66 2 0 0 0 0.25207 1 5818 5818 16.942 1.0951 1 154040 52997 12902 32988 33005 61031 61031 -0.043560354247802024 VYDVVEEKL 9 Unmodified _VYDVVEEKL_ 0 0 0 ENSG00000088179|ENST00000263708|PTPN4;ENSG00000088179.9,PTPN4,chr2,+,I15.1,119920242,119926597|29|5.82|5|intron;ENSG00000088179.9,PTPN4,chr2,+,I15.1,119920242,119926597|29|5.82|3|intron ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 MSMS UPN48_class_I_Rep_3 7 547.291015625 2 547.292422 1092.57029 NaN NaN NaN NaN NaN NaN NaN 48.638 1 52.267 51.767 52.767 3.6291 0 0 0 0.072238 1 9679 9679 30.703 21.32 1 52998 1305 32989 33006 61032 61032 0.0277088617501704 VYDVVELKF 9 Unmodified _VYDVVELKF_ 0 0 0 ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 MULTI-MSMS UPN48_class_I_Rep_1 5 556.305419921875 2 556.305332 1110.59611 0.54126 0.00030111 -0.142 -7.8998E-05 0.39926 0.00022211 556.3051278510369 67.572 0.93975 71.023 70.73 71.669 3.4516 208 71 4 0 0 0 0.0055684 5 15595 15469;15555;15595;15632;15685 96.936 43.128 1 1909600 52999 3547 32990 33007 61033;61034;61035;61036;61037 61035 0.0452378041729844 VYDVVELKF 9 Unmodified _VYDVVELKF_ 0 0 0 ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 MULTI-MSMS UPN48_class_I_Rep_2 6 556.3056030273438 2 556.305332 1110.59611 0.5105 0.00028399 -0.077281 -4.2992E-05 0.43322 0.000241 556.3052042907506 67.375 0.91273 70.871 70.605 71.518 3.4964 211 75 4 0 0 0 0.0055684 5 15459 15421;15459;15531;15568;15605 78.06 43.128 1 1525000 53000 3547 32990 33007 61038;61039;61040;61041;61042 61039 0.0452378041729844 VYDVVELKF 9 Unmodified _VYDVVELKF_ 0 0 0 ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 MULTI-MSMS UPN48_class_I_Rep_3 7 556.305419921875 2 556.305332 1110.59611 0.45454 0.00025286 0.0031518 1.7534E-06 0.45769 0.00025462 556.3052639693095 67.49 1.0334 70.997 70.471 71.504 3.5077 219 89 3 0 0 0 0.0069771 6 15393 15281;15322;15358;15393;15433;15472 117.76 42.832 1 1543100 53001 3547 32990 33007 61043;61044;61045;61046;61047;61048 61046 0.0452378041729844 VYDWIEQLRQ 10 Unmodified _VYDWIEQLRQ_ 0 0 0 REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|68|2|sense REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|68|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.9000244140625 3 450.56646 1348.67755 -0.55387 -0.00024956 -0.8381 -0.00037762 -1.392 -0.00062717 450.56611023591904 37.375 0.55774 40.773 40.463 41.021 3.3988 56 41 2 0 0 0 0.55335 1 7094 7094 5.0475 0 1 62492 + 53002 28861 32991 33008 61049 61049 0.017158561091946467 VYDWIEQLRQ 10 Unmodified _VYDWIEQLRQ_ 0 0 0 REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|68|2|sense REV__L1PA6_dup1034|chr3:51647859-51653935:+|4.121334530860858|0.3922632930280367|3.39|151.0|68|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 450.56646 1348.67755 -0.75419 -0.00033981 -0.45842 -0.00020655 -1.2126 -0.00054636 450.90056732560157 37.452 0.4638 40.699 40.422 40.886 3.247 -0.00063473 0.00042635 NaN 5.0475 44 32 2 NaN NaN NaN NaN 0 NaN NaN 0 78624 + 53003 28861 32991 33008 0.017158561091946467 VYDWIEQSQ 9 Unmodified _VYDWIEQSQ_ 0 0 0 REV__L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|17|1|sense REV__L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 584.2702026367188 2 584.269478 1166.5244 NaN NaN NaN NaN NaN NaN NaN 71.487 1 74.862 74.362 75.362 3.3751 0 0 0 0.31276 1 17433 17433 10.074 0 1 + 53004 29821 32992 33009 61050 61050 -0.05219759007263747 VYEDTLTLF 9 Unmodified _VYEDTLTLF_ 0 0 0 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 MULTI-MSMS UPN48_class_I_Rep_2 6 550.7796630859375 2 550.779148 1099.54374 0.48928 0.00026949 1.002 0.00055186 1.4912 0.00082134 550.7796971891042 51.196 0.59756 54.864 54.575 55.173 3.6679 69 40 2 0 0 0 0.25207 1 10547 10547 16.942 3.0362 1 179470 53005 5079 32993 33010 61051 61051 -0.002048027163482402 VYEEILHQI 9 Unmodified _VYEEILHQI_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS UPN48_class_I_Rep_1 5 572.3049926757812 2 572.305864 1142.59717 0.51614 0.00029539 -0.054075 -3.0947E-05 0.46207 0.00026444 572.3057981594314 57.978 0.59372 61.465 61.251 61.844 3.487 52 36 2 0 0 0 0.028995 4 12663 12577;12603;12618;12663 57.722 30.093 1 144010 53006 2935 32994 33011 61052;61053;61054;61055 61055 0.031579947861928304 VYEEILHQI 9 Unmodified _VYEEILHQI_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS UPN48_class_I_Rep_2 6 572.306884765625 2 572.305864 1142.59717 0.57965 0.00033174 -0.13714 -7.8489E-05 0.44251 0.00025325 572.3057496615379 58.055 0.54295 61.569 61.228 61.771 3.5142 46 36 2 0 0 0 0.062142 5 12581 12541;12546;12581;12599;12640 43.772 16.144 1 144590 53007 2935 32994 33011 61056;61057;61058;61059;61060 61058 0.031579947861928304 VYEEILHQI 9 Unmodified _VYEEILHQI_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS UPN48_class_I_Rep_3 7 572.3068237304688 2 572.305864 1142.59717 0.40225 0.00023021 0.013639 7.8057E-06 0.41589 0.00023802 572.3058448833965 57.809 0.49812 61.34 61.161 61.659 3.5317 55 33 2 0 0 0 0.048662 3 12494 12449;12494;12538 49.554 16.769 1 179780 53008 2935 32994 33011 61061;61062;61063 61062 0.031579947861928304 VYENVSHFL 9 Unmodified _VYENVSHFL_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-SECPEP UPN48_class_I_Rep_1 5 554.7799072265625 2 554.277106 1106.53966 0.52988 0.0002937 -0.20807 -0.00011533 0.3218 0.00017837 554.2768383341273 54.309 0.45137 57.823 57.686 58.137 3.5143 39 30 2 0 0 0 0.095537 1 11535 11535 21.537 8.4945 1 109650 53009 4143 32995 33012 61064 61064 -0.009348474193984657 VYENVSHFL 9 Unmodified _VYENVSHFL_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS UPN48_class_I_Rep_2 6 554.7777709960938 2 554.277106 1106.53966 0.59233 0.00032832 -0.38093 -0.00021114 0.2114 0.00011717 554.2768465474137 54.376 0.45206 57.958 57.675 58.127 3.5817 34 25 2 0 0 0 0.14216 2 11476 11476;11497 26.268 14.027 1 69758 53010 4143 32995 33012 61065;61066 61065 -0.009348474193984657 VYENVSHFL 9 Unmodified _VYENVSHFL_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS UPN48_class_I_Rep_3 7 554.2780151367188 2 554.277106 1106.53966 0.24848 0.00013773 0.095205 5.277E-05 0.34368 0.0001905 554.2770030121214 54.29 0.51181 57.859 57.668 58.179 3.5694 42 35 2 0 0 0 0.19147 1 11433 11433 21.537 8.4945 1 60816 53011 4143 32995 33012 61067 61067 -0.009348474193984657 VYERAVEFF 9 Unmodified _VYERAVEFF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MSMS UPN48_class_I_Rep_1 5 580.2918701171875 2 580.292756 1158.57096 NaN NaN NaN NaN NaN NaN NaN 58.919 1 62.406 61.906 62.906 3.487 0 0 0 0.20399 1 12900 12900 16.149 2.2431 1 53012 1564 32996 33013 61068 61068 -0.0019827438529773644 VYERAVEFF 9 Unmodified _VYERAVEFF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MSMS UPN48_class_I_Rep_1 5 580.2943725585938 2 580.292756 1158.57096 NaN NaN NaN NaN NaN NaN NaN 58.932 1 62.419 61.919 62.919 3.487 0 0 0 0.20399 1 12904 12904 16.149 2.2431 1 53013 1564 32996 33013 61069 61069 -0.0019827438529773644 VYERAVEFF 9 Unmodified _VYERAVEFF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS UPN48_class_I_Rep_2 6 580.29443359375 2 580.292756 1158.57096 0.56598 0.00032843 0.80314 0.00046606 1.3691 0.00079449 580.2934369013448 58.903 0.58472 62.402 62.077 62.661 3.4987 39 35 2 0 0 0 0.19147 3 12878 12808;12832;12878 21.537 3.3906 1 95190 53014 1564 32996 33013 61070;61071;61072 61072 -0.0019827438529773644 VYERAVEFF 9 Unmodified _VYERAVEFF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MSMS UPN48_class_I_Rep_3 7 580.2948608398438 2 580.292756 1158.57096 NaN NaN NaN NaN NaN NaN NaN 58.729 1 62.252 61.752 62.752 3.5231 0 0 0 0.28608 1 12754 12754 11.495 2.1116 1 53015 1564 32996 33013 61073 61073 -0.0019827438529773644 VYEWDFYIQ 9 Unmodified _VYEWDFYIQ_ 0 0 0 REV__L1MC5_dup10029|chr11:43462680-43462918:+|1.0903001404393804|0.0177314044387531|5.94|151.0|12|1|anti-sense REV__L1MC5_dup10029|chr11:43462680-43462918:+|1.0903001404393804|0.0177314044387531|5.94|151.0|12|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 421.328369140625 3 421.529123 1261.56554 -0.51279 -0.00021616 -1.357 -0.00057203 -1.8698 -0.00078818 421.86231398734765 15.047 0.10811 18.522 18.444 18.552 3.475 14 11 2 0 0 0 0.12462 1 710 710 0.96228 0.82238 1 14111 + 53016 27042 32997 33014 61074 61074 -0.054779979677732626 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS UPN48_class_I_Rep_1 5 602.30615234375 2 602.305864 1202.59717 0.50091 0.0003017 0.10406 6.2679E-05 0.60497 0.00036438 602.3058227035096 56.465 0.94228 59.967 59.58 60.522 3.5014 218 77 4 0 0 0 0.0047467 8 12146 12060;12066;12095;12106;12146;12186;12222;12260 125.04 88.911 1 1741300 53017 2862 32998 33015 61075;61076;61077;61078;61079;61080;61081;61082 61079 0.003979947861580513 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS UPN48_class_I_Rep_2 6 602.30615234375 2 602.305864 1202.59717 0.5998 0.00036126 0.12001 7.2282E-05 0.71981 0.00043354 602.305805433371 56.491 1.0837 60.024 59.618 60.701 3.5333 256 94 4 0 0 0 0.0047467 6 12112 12033;12077;12112;12149;12187;12223 93.938 71.202 1 1302900 53018 2862 32998 33015 61083;61084;61085;61086;61087;61088 61085 0.003979947861580513 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS UPN48_class_I_Rep_3 7 602.3060913085938 2 602.305864 1202.59717 0.44356 0.00026716 0.26007 0.00015664 0.70363 0.0004238 602.3058971198375 56.36 0.92244 59.902 59.499 60.422 3.5427 229 85 4 0 0 0 0.0047467 6 12018 11939;11974;12018;12058;12096;12137 93.938 70.148 1 1453800 53019 2862 32998 33015 61089;61090;61091;61092;61093;61094 61091 0.003979947861580513 VYFEGSDFKF 10 Unmodified _VYFEGSDFKF_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS UPN48_class_I_Rep_2 6 619.3164672851562 2 619.790047 1237.56554 NaN NaN NaN NaN NaN NaN NaN 66.865 1 70.361 69.861 70.861 3.4964 0 0 0 0.53105 1 15309 15309 4.897 1.6157 1 53020 3370 32999 33016 61095 61095 -0.043739979677638985 VYFENLMQL 9 Oxidation (M) _VYFENLM(Oxidation (M))QL_ VYFENLM(1)QL VYFENLM(70)QL 0 0 1 ENST00000568329.5_1_15:75091021-75093212:+|nuORF;ENSG00000103653|ENST00000220003|CSK ENST00000568329.5_1_15:75091021-75093212:+|nuORF ENST00000568329.5_1_15:75091021-75093212:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 586.78564453125 2 586.78645 1171.55835 0.55765 0.00032722 0.023718 1.3918E-05 0.58137 0.00034114 586.7863441368604 71.969 0.37959 75.495 75.392 75.772 3.5266 73 40 2 0 0 0 0.0094161 2 16775 16775;16781 70.332 47.596 1 160690 53021 1667 33000 33017 61096;61097 61096 50 -0.02057053839848777 VYFFYKFF 8 Unmodified _VYFFYKFF_ 0 0 0 REV__L1MEf_dup1888|chr3:15578866-15579777:+|1.1932509002753788|0.1015272776644229|3.55|151.0|34|1|anti-sense REV__L1MEf_dup1888|chr3:15578866-15579777:+|1.1932509002753788|0.1015272776644229|3.55|151.0|34|1|anti-sense MSMS UPN48_class_I_Rep_1 5 580.794189453125 2 580.794404 1159.57425 NaN NaN NaN NaN NaN NaN NaN 58.858 1 62.345 61.845 62.845 3.487 0 0 0 0.40404 1 12881 12881 5.2307 0 1 + 53022 28618 33001 33018 61098 61098 0.000850204593689341 VYFGALWL 8 Unmodified _VYFGALWL_ 0 0 0 L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|296|3|anti-sense L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|296|3|anti-sense L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|296|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.7668762207031 2 484.765646 967.516739 0.13266 6.4309E-05 1.3867 0.00067221 1.5193 0.00073652 484.76703585880654 93.37 0.20963 96.994 96.898 97.108 3.624 32 24 2 0 0 0 0.82752 1 22444 22444 0.79363 0 1 60360 53023 10895 33002 33019 61099 61099 0.03168178253815768 VYFGQVFFM 9 Unmodified _VYFGQVFFM_ 0 0 0 L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|56|1|anti-sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|56|1|anti-sense L1MEc_dup7861|chr7:18416761-18418236:-|1.009616650369987|0.0097775780614934|6.69|148.0|56|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.2764282226562 2 569.275521 1136.53649 NaN NaN NaN NaN NaN NaN NaN 31.956 1 35.657 35.157 36.157 3.7015 0 0 0 0.38639 1 4794 4794 3.9444 0.66309 1 53024 13140 33003 33020 61100 61100 -0.026318137977341394 VYFHWFWHYP 10 Unmodified _VYFHWFWHYP_ 0 0 0 L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|59|3|anti-sense L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|59|3|anti-sense L1MEd_dup1414|chr1:197579245-197580068:-|1.5602668039810943|0.1365833162354247|3.51|151.0|59|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 494.5644226074219 3 494.564502 1480.67168 -0.33958 -0.00016794 0.54831 0.00027118 0.20873 0.00010323 494.5646400286765 16.467 0.30878 19.989 19.904 20.213 3.5224 41 33 2 0 0 0 0.5652 1 1088 1088 0.15932 0 1 41861 53025 13169 33004 33021 61101 61101 -0.049431976117830345 VYFKRENCMVY 11 Unmodified _VYFKRENCMVY_ 0 0 0 L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|27|2|sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|27|2|sense L1MB7_dup6543|chr5:76467272-76468142:+|2.60279995498972|0.0155499129237428|7.39|151.0|27|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 485.2369079589844 3 484.565186 1450.67373 -0.48828 -0.0002366 -0.42665 -0.00020674 -0.91493 -0.00044334 484.9005016778471 30.567 0.043526 33.879 33.852 33.896 3.3116 5 3 2 0 0 0 22.551 1 5093 5093 3.0723 0 1 24927 53026 10860 33005 33022 61102 61102 -0.03358272980494803 VYFPCLLL 8 Unmodified _VYFPCLLL_ 0 0 0 REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|53|2|anti-sense REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.26904296875 2 484.269707 966.524861 -0.17646 -8.5452E-05 -0.61845 -0.0002995 -0.79491 -0.00038495 484.2694459739136 21.703 0.83769 25.127 24.768 25.606 3.4241 140 91 2 0 0 0 0.82752 1 2406 2406 6.3541 0 1 82229 + 53027 23479 33006 33023 61103 61103 0.04025989178921918 VYFPCLLL 8 Unmodified _VYFPCLLL_ 0 0 0 REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|53|2|anti-sense REV__HAL1M8_dup90|chr1:173771783-173772971:+|2.5568656560891907|0.3297766830383096|2.95|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 484.770263671875 2 484.269707 966.524861 -0.62106 -0.00030076 -0.10606 -5.1362E-05 -0.72712 -0.00035212 484.2697064095342 21.978 0.89223 25.328 24.97 25.862 3.3496 107 82 2 0 0 0 0.82752 1 2501 2501 6.3541 0 1 75953 + 53028 23479 33006 33023 61104 61104 0.04025989178921918 VYFPEKDI 8 Unmodified _VYFPEKDI_ 0 0 0 ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL MSMS UPN47_class_I_Rep_3 4 505.76287841796875 2 505.7633 1009.51205 NaN NaN NaN NaN NaN NaN NaN 59.074 1 62.239 61.739 62.739 3.1658 0 0 0 0.4032 1 13775 13775 6.3541 0 1 53029 4206 33007 33024 61105 61105 0.0076724932038132465 VYFPVRDR 8 Unmodified _VYFPVRDR_ 0 0 0 ENST00000473585.1_1_19:58258206-58260529:+|nuORF;ENST00000317178.9_1_19:58258206-58262166:+|nuORF ENST00000473585.1_1_19:58258206-58260529:+|nuORF ENST00000473585.1_1_19:58258206-58260529:+|nuORF MSMS UPN47_class_I_Rep_2 3 526.2990112304688 2 526.287808 1050.56106 NaN NaN NaN NaN NaN NaN NaN 61.742 1 65.001 64.501 65.501 3.2594 0 0 0 0.4032 1 14536 14536 6.3541 0 1 53030 6141 33008 33025 61106 61106 0.03780582399986088 VYFRFKRS 8 Unmodified _VYFRFKRS_ 0 0 0 REV__MER102b_dup268|chr2:39118566-39118853:-|2.169096189967943|0.0118518677190752|7.52|151.0|22|3|anti-sense REV__MER102b_dup268|chr2:39118566-39118853:-|2.169096189967943|0.0118518677190752|7.52|151.0|22|3|anti-sense MSMS UPN46_class_I_Rep_3 1 551.8115844726562 2 551.811451 1101.60835 NaN NaN NaN NaN NaN NaN NaN 66.639 1 66.639 66.139 67.139 0 0 0 0 0.40738 1 15130 15130 0.79363 0 1 + 53031 31066 33009 33026 61107 61107 0.06160861670991835 VYFRPLSSY 9 Unmodified _VYFRPLSSY_ 0 0 0 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 ENSG00000165202|ENST00000297913|OR1Q1 MSMS UPN48_class_I_Rep_3 7 566.7527465820312 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 69.906 1 73.419 72.919 73.919 3.5128 0 0 0 0.38916 1 16138 16138 3.2813 0 1 53032 4165 33010 33027 61108 61108 0.015980294773271453 VYFRRSTW 8 Unmodified _VYFRRSTW_ 0 0 0 L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|48|1|anti-sense L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|48|1|anti-sense L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|48|1|anti-sense MSMS UPN47_class_I_Rep_3 4 557.8102416992188 2 557.793258 1113.57196 NaN NaN NaN NaN NaN NaN NaN 67.588 1 70.78 70.28 71.28 3.1914 0 0 0 0.40746 1 16373 16373 0.69038 0 1 53033 12078 33011 33028 61109 61109 0.019719847742635466 VYFVSYKF 8 Unmodified _VYFVSYKF_ 0 0 0 L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|131|2|anti-sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|131|2|anti-sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|131|2|anti-sense MSMS UPN47_class_I_Rep_1 2 526.776123046875 2 526.776211 1051.53787 NaN NaN NaN NaN NaN NaN NaN 33.755 1 37.453 36.953 37.953 3.6983 0 0 0 0.40738 1 5985 5985 0.79363 0 1 53034 9870 33012 33029 61110 61110 0.01416143562664729 VYFYCHFIF 9 Unmodified _VYFYCHFIF_ 0 0 0 REV__L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|47|1|anti-sense REV__L1MB2_dup8054|chr19:21037416-21038427:-|1.1262614832525857|0.1739225421363635|2.7|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_3 7 619.7892456054688 2 619.788795 1237.56304 NaN NaN NaN NaN NaN NaN NaN 66.854 1 70.361 69.861 70.861 3.5077 0 0 0 0.3264 1 15217 15217 9.3474 1.4373 1 + 53035 25774 33013 33030 61111 61111 -0.04624124906445104 VYGASSLL 8 Unmodified _VYGASSLL_ 0 0 0 REV__L1MC2_dup2865|chr8:47526732-47527619:+|1.6260910206887966|0.1175526460543762|3.79|151.0|54|3|anti-sense REV__L1MC2_dup2865|chr8:47526732-47527619:+|1.6260910206887966|0.1175526460543762|3.79|151.0|54|3|anti-sense MSMS UPN47_class_I_Rep_3 4 405.2220458984375 2 405.223811 808.433069 NaN NaN NaN NaN NaN NaN NaN 49.011 1 52.246 51.746 52.746 3.2345 0 0 0 0.4032 1 10707 10707 6.3541 0 1 + 53036 26649 33014 33031 61112 61112 0.021190220860944464 VYGCQLAHPL 10 Unmodified _VYGCQLAHPL_ 0 0 0 REV__L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|53|1|anti-sense REV__L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_3 4 550.779052734375 2 550.781502 1099.54845 NaN NaN NaN NaN NaN NaN NaN 51.635 1 54.851 54.351 55.351 3.2163 0 0 0 0.53105 1 11508 11508 7.2892 0.93513 1 + 53037 26966 33015 33032 61113 61113 0.002658029454323696 VYGDFQEAF 9 Unmodified _VYGDFQEAF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS UPN48_class_I_Rep_1 5 538.239990234375 2 538.24019 1074.46583 0.459 0.00024705 0.15288 8.2289E-05 0.61188 0.00032934 538.2400049613536 65.292 0.61385 68.746 68.455 69.069 3.4541 95 44 3 0 0 0 0.048662 3 14858 14817;14858;14881 49.554 13.51 1 257630 53038 2025 33016 33033 61114;61115;61116 61115 -0.06842815581717332 VYGDFQEAF 9 Unmodified _VYGDFQEAF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS UPN48_class_I_Rep_2 6 538.2405395507812 2 538.24019 1074.46583 0.49424 0.00026602 0.08675 4.6693E-05 0.58099 0.00031271 538.2399753891254 65.177 0.65282 68.656 68.34 68.993 3.4792 95 48 3 0 0 0 0.066364 3 14779 14740;14779;14821 41.956 13.469 1 235350 53039 2025 33016 33033 61117;61118;61119 61118 -0.06842815581717332 VYGDFQEAF 9 Unmodified _VYGDFQEAF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS UPN48_class_I_Rep_3 7 538.7421875 2 538.24019 1074.46583 0.60417 0.00032519 -0.038051 -2.0481E-05 0.56611 0.00030471 538.2399937431235 65.071 0.60184 68.579 68.299 68.901 3.5077 91 42 3 0 0 0 0.088679 2 14709 14671;14709 36.506 13.185 1 229910 53040 2025 33016 33033 61120;61121 61121 -0.06842815581717332 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 536.7827758789062 2 536.782359 1071.55016 0.51904 0.00027861 0.27817 0.00014932 0.79721 0.00042793 536.7823886736146 60.74 1.0614 64.214 63.725 64.786 3.4737 219 85 3 0 0 0 6.2139E-05 4 13444 13404;13444;13480;13520 170.55 127.58 1 1596900 53041 6245 33017 33034 61122;61123;61124;61125 61123 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 536.7826538085938 2 536.782359 1071.55016 0.52331 0.00028091 0.22149 0.00011889 0.7448 0.0003998 536.7823684760677 60.637 1.0739 64.116 63.652 64.726 3.4785 255 95 3 0 0 0 6.2139E-05 3 13359 13359;13394;13429 170.55 127.58 1 2267100 53042 6245 33017 33034 61126;61127;61128 61126 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 536.78271484375 2 536.782359 1071.55016 0.55536 0.00029811 0.20482 0.00010994 0.76018 0.00040805 536.7823491091658 60.497 1.0949 64.014 63.538 64.633 3.5169 278 101 4 0 0 0 0.0045793 3 13295 13255;13295;13334 170.55 122.21 1 1897700 53043 6245 33017 33034 61129;61130;61131 61130 0.017251800257099603 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6 ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENST00000588238.1_1_19:4446018-4446171:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 527.2898559570312 2 527.290017 1052.56548 0.36233 0.00019106 -1.6837 -0.00088782 -1.3214 -0.00069676 527.28990903834 55.153 0.91831 58.661 58.223 59.142 3.5082 174 59 4 0 0 0 0.019142 4 11730 11707;11730;11769;11814 63.961 20.102 1 508820 53044 4321 33018 33035 61132;61133;61134;61135 61133 0.04130046822888289 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6 ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENST00000588238.1_1_19:4446018-4446171:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 527.2899169921875 2 527.290017 1052.56548 0.52876 0.00027881 -1.58 -0.0008331 -1.0512 -0.00055429 527.2898053201815 55.088 0.89364 58.644 58.216 59.11 3.5559 168 53 5 0 0 0 0.022868 3 11709 11709;11762;11806 61.602 32.52 1 453650 53045 4321 33018 33035 61136;61137;61138 61136 0.04130046822888289 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6 ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENST00000588238.1_1_19:4446018-4446171:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 527.2904052734375 2 527.290017 1052.56548 0.33797 0.00017821 -1.483 -0.00078196 -1.145 -0.00060376 527.2899036046406 55.063 0.84992 58.632 58.226 59.076 3.5694 134 47 4 0 0 0 0.038999 3 11623 11623;11666;11722 53.404 24.322 1 660560 53046 4321 33018 33035 61139;61140;61141 61139 0.04130046822888289 VYGHSLSYEI 10 Unmodified _VYGHSLSYEI_ 0 0 0 ENST00000457379.1_1_2:50815958-50816216:-|nuORF ENST00000457379.1_1_2:50815958-50816216:-|nuORF ENST00000457379.1_1_2:50815958-50816216:-|nuORF MSMS UPN48_class_I_Rep_3 7 584.287841796875 2 584.287671 1166.56079 NaN NaN NaN NaN NaN NaN NaN 59.728 1 63.244 62.744 63.744 3.5169 0 0 0 0.53105 1 13060 13060 6.2058 0.9089 1 53047 6837 33019 33036 61142 61142 -0.015828821105287716 VYGNRNTK 8 Unmodified _VYGNRNTK_ 0 0 0 LTR81A_dup85|chr1:246287612-246287862:+|1.3682558668323832|0.0077752070411028|7.46|151.0|1|1|sense LTR81A_dup85|chr1:246287612-246287862:+|1.3682558668323832|0.0077752070411028|7.46|151.0|1|1|sense LTR81A_dup85|chr1:246287612-246287862:+|1.3682558668323832|0.0077752070411028|7.46|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 476.2539978027344 2 476.253966 950.493378 0.101 4.8104E-05 0.16518 7.8667E-05 0.26618 0.00012677 476.2540307723908 94.747 1.59 98.364 97.524 99.114 3.6167 289 196 2 0 0 0 0.82752 1 22612 22612 5.2307 5.2307 1 238340 53048 15715 33020 33037 61143 61143 0.016151324691691116 VYGNRNTK 8 Unmodified _VYGNRNTK_ 0 0 0 LTR81A_dup85|chr1:246287612-246287862:+|1.3682558668323832|0.0077752070411028|7.46|151.0|1|1|sense LTR81A_dup85|chr1:246287612-246287862:+|1.3682558668323832|0.0077752070411028|7.46|151.0|1|1|sense LTR81A_dup85|chr1:246287612-246287862:+|1.3682558668323832|0.0077752070411028|7.46|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 476.2539978027344 2 476.253966 950.493378 0.2173 0.00010349 0.069171 3.2943E-05 0.28647 0.00013643 476.25401240149654 94.615 1.6245 98.516 97.505 99.13 3.9016 277 220 2 0 0 0 0.82752 1 22286 22286 5.2307 5.2307 1 298760 53049 15715 33020 33037 61144 61144 0.016151324691691116 VYGPPQPYFAA 11 Unmodified _VYGPPQPYFAA_ 0 0 0 nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 MULTI-MSMS UPN48_class_I_Rep_1 5 605.3012084960938 2 605.300581 1208.58661 0.54931 0.0003325 0.16775 0.00010154 0.71706 0.00043404 605.3005820038071 63.404 1.7312 66.862 66.043 67.774 3.4578 201 128 2 0 0 0 0.32821 5 14129 14129;14169;14289;14296;14334 13.042 5.9407 1 191590 53050 4458 33021 33038 61145;61146;61147;61148;61149 61145 -0.009339878682339986 VYGPPQPYFAA 11 Unmodified _VYGPPQPYFAA_ 0 0 0 nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 MULTI-MSMS UPN48_class_I_Rep_2 6 605.30126953125 2 605.300581 1208.58661 0.53255 0.00032236 0.084751 5.13E-05 0.61731 0.00037366 605.300603601848 63.292 1.8102 66.766 65.879 67.689 3.4738 197 134 3 0 0 0 0.32821 7 14105 14056;14105;14150;14192;14232;14319;14360 13.042 5.9407 1 302410 53051 4458 33021 33038 61150;61151;61152;61153;61154;61155;61156 61151 -0.009339878682339986 VYGPPQPYFAA 11 Unmodified _VYGPPQPYFAA_ 0 0 0 nc|ENSG00000170162|Q8N8G2-2|VGLL2;ENSG00000170162|ENST00000326274|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 nc|ENSG00000170162|Q8N8G2-2|VGLL2 MULTI-MSMS UPN48_class_I_Rep_3 7 605.301025390625 2 605.300581 1208.58661 0.56543 0.00034226 0.10915 6.6071E-05 0.67459 0.00040833 605.3005056666468 63.309 1.5471 66.818 65.873 67.42 3.5091 225 116 3 0 0 0 0.32821 8 14004 13968;14004;14045;14098;14136;14184;14195;14237 13.042 5.9407 1 222450 53052 4458 33021 33038 61157;61158;61159;61160;61161;61162;61163;61164 61158 -0.009339878682339986 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS UPN48_class_I_Rep_1 5 486.263427734375 2 486.263468 970.512382 0.13873 6.7457E-05 -0.086906 -4.2259E-05 0.05182 2.5198E-05 486.26339305353355 45.912 0.86042 49.428 49.105 49.965 3.5162 118 58 3 0 0 0 0.10956 1 8951 8951 32.037 10.501 1 420370 53053 3693 33022 33039 61165 61165 0.025946690402406603 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS UPN48_class_I_Rep_2 6 486.2633056640625 2 486.263468 970.512382 0.16463 8.0051E-05 0.005902 2.8699E-06 0.17053 8.2921E-05 486.2634129581914 45.597 0.79111 49.355 49.039 49.83 3.7579 142 59 3 0 0 0 0.0055684 4 8790 8749;8790;8828;8867 80.676 40.726 1 458150 53054 3693 33022 33039 61166;61167;61168;61169 61167 0.025946690402406603 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS UPN48_class_I_Rep_3 7 486.2633361816406 2 486.263468 970.512382 0.15405 7.4907E-05 -0.060526 -2.9432E-05 0.09352 4.5475E-05 486.26341447756283 45.832 0.79654 49.468 49.109 49.906 3.6369 121 56 3 0 0 0 0.0055684 4 8844 8762;8802;8844;8885 78.06 38.111 1 380250 53055 3693 33022 33039 61170;61171;61172;61173 61172 0.025946690402406603 VYGVWILHF 9 Unmodified _VYGVWILHF_ 0 0 0 REV__L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|351|2|anti-sense REV__L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|351|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 567.78466796875 2 567.310752 1132.60695 0.42748 0.00024252 0.89203 0.00050606 1.3195 0.00074857 567.3118235434576 51.618 0.080475 55.141 55.124 55.204 3.5227 10 7 2 0 0 0 0.10758 1 10662 10662 9.3474 0 1 108690 + 53056 29552 33023 33040 61174 61174 0.04595227582217376 VYGWCYFI 8 Unmodified _VYGWCYFI_ 0 0 0 REV__Tigger18a_dup1203|chr20:48783812-48784587:+|1.1289882773581936|0.0201316673183881|5.81|151.0|43|3|anti-sense REV__Tigger18a_dup1203|chr20:48783812-48784587:+|1.1289882773581936|0.0201316673183881|5.81|151.0|43|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 525.3068237304688 2 525.741314 1049.46807 0.42874 0.00022541 -0.065379 -3.4373E-05 0.36336 0.00019103 525.7413217581554 64.927 0.13736 68.406 68.34 68.478 3.4792 14 10 2 0 0 0 0.72333 1 14715 14715 2.8892 0 1 47942 + 53057 32613 33024 33041 61175 61175 -0.05468058377618945 VYGWCYFI 8 Unmodified _VYGWCYFI_ 0 0 0 REV__Tigger18a_dup1203|chr20:48783812-48784587:+|1.1289882773581936|0.0201316673183881|5.81|151.0|43|3|anti-sense REV__Tigger18a_dup1203|chr20:48783812-48784587:+|1.1289882773581936|0.0201316673183881|5.81|151.0|43|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 525.741314 1049.46807 0.47726 0.00025091 -0.27549 -0.00014484 0.20176 0.00010608 526.2424218628674 64.695 0.054489 68.204 68.184 68.238 3.5083 -0.10135 -0.00021053 NaN 2.8892 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 34288 + 53058 32613 33024 33041 -0.05468058377618945 VYGYNKTR 8 Unmodified _VYGYNKTR_ 0 0 0 REV__ENSG00000172426|ENST00000372163|RSPH9 REV__ENSG00000172426|ENST00000372163|RSPH9 MSMS UPN47_class_I_Rep_2 3 500.7644958496094 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 42.905 1 46.266 45.766 46.766 3.3611 0 0 0 0.40738 1 8796 8796 0.79363 0 1 + 53059 20448 33025 33042 61176 61176 0.014003031290030776 VYGYNKTR 8 Unmodified _VYGYNKTR_ 0 0 0 REV__ENSG00000172426|ENST00000372163|RSPH9 REV__ENSG00000172426|ENST00000372163|RSPH9 MSMS UPN48_class_I_Rep_1 5 500.7657775878906 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 67.275 1 70.727 70.227 71.227 3.4516 0 0 0 0.40625 1 15449 15449 2.3027 0.24298 1 + 53060 20448 33025 33042 61177 61177 0.014003031290030776 VYGYVVKL 8 Unmodified _VYGYVVKL_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-MSMS UPN48_class_I_Rep_1 5 470.7784118652344 2 470.778754 939.542954 0.11527 5.4268E-05 -0.54567 -0.00025689 -0.4304 -0.00020262 470.7786056904685 54.044 0.53204 57.559 57.357 57.889 3.5143 58 36 2 0 0 0 0.82752 2 11412 11407;11412 40.449 16.428 1 152300 53061 1214 33026 33043 61178;61179 61179 0.07076447425288279 VYGYVVKL 8 Unmodified _VYGYVVKL_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-SECPEP UPN48_class_I_Rep_2 6 470.2749938964844 2 470.778754 939.542954 0.2953 0.00013902 -0.70342 -0.00033115 -0.40812 -0.00019213 470.7784855793543 53.959 0.54647 57.541 57.33 57.877 3.5817 52 36 2 0 0 0 0.72333 1 11357 11357 38.151 14.131 1 153200 53062 1214 33026 33043 61180 61180 0.07076447425288279 VYGYVVKL 8 Unmodified _VYGYVVKL_ 0 0 0 nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-4|PTPRC nc|ENSG00000081237|P08575-4|PTPRC MULTI-MSMS UPN48_class_I_Rep_3 7 470.77862548828125 2 470.778754 939.542954 0.054675 2.574E-05 -0.56033 -0.00026379 -0.50566 -0.00023805 470.7785558946558 53.978 0.5318 57.562 57.321 57.853 3.5836 58 37 2 0 0 0 0.82752 1 11316 11316 30.225 6.2042 1 100560 53063 1214 33026 33043 61181 61181 0.07076447425288279 VYHIYFIHL 9 Unmodified _VYHIYFIHL_ 0 0 0 L1MA3_dup2114|chr4:17896599-17897213:-|1.0224601099708013|0.1708425645974776|2.58|151.0|29|1|anti-sense L1MA3_dup2114|chr4:17896599-17897213:-|1.0224601099708013|0.1708425645974776|2.58|151.0|29|1|anti-sense L1MA3_dup2114|chr4:17896599-17897213:-|1.0224601099708013|0.1708425645974776|2.58|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.8274536132812 2 602.829309 1203.64407 NaN NaN NaN NaN NaN NaN NaN 55.933 1 59.488 58.988 59.988 3.5554 0 0 0 0.22893 1 11905 11905 14.582 3.7578 1 53064 9502 33027 33044 61182 61182 0.05038899127998775 VYHLSVDFLP 10 Unmodified _VYHLSVDFLP_ 0 0 0 ENST00000582963.1_1_17:37885853-37886060:-|nuORF ENST00000582963.1_1_17:37885853-37886060:-|nuORF ENST00000582963.1_1_17:37885853-37886060:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 595.3172607421875 2 595.316232 1188.61791 0.58118 0.00034598 -0.066354 -3.9502E-05 0.51482 0.00030648 595.3163461293123 60.543 0.63731 64.016 63.693 64.33 3.4737 78 46 2 0 0 0 0.51565 1 13482 13482 10.074 0.6908 1 200020 53065 7565 33028 33045 61183 61183 0.031145851658493484 VYHSGWSY 8 Unmodified _VYHSGWSY_ 0 0 0 REV__AluJr4_dup9401|chr8:55894846-55895117:-|2.599398439542765|0.0091367049754577|8.15|151.0|20|3|anti-sense REV__AluJr4_dup9401|chr8:55894846-55895117:-|2.599398439542765|0.0091367049754577|8.15|151.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 499.5473327636719 2 499.721967 997.429381 NaN NaN NaN NaN NaN NaN NaN 55.947 1 55.947 55.447 56.447 0 0 0 0 0.4032 1 12183 12183 6.3541 3.4649 1 + 53066 17074 33029 33046 61184 61184 -0.06943647687762677 VYHVLLFH 8 Unmodified _VYHVLLFH_ 0 0 0 L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|33|2|anti-sense L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|33|2|anti-sense L1MB2_dup7364|chr16:75009359-75009986:-|2.0198430810049515|0.012422048834055|7.35|151.0|33|2|anti-sense MSMS UPN48_class_I_Rep_3 7 514.2903442382812 2 514.28982 1026.56509 NaN NaN NaN NaN NaN NaN NaN 36.92 1 40.583 40.083 41.083 3.663 0 0 0 0.40738 1 6165 6165 0.79363 0 1 53067 10280 33030 33047 61185 61185 0.052866718937366386 VYHVVTDVV 9 Unmodified _VYHVVTDVV_ 0 0 0 REV__ENSG00000166819|ENST00000300055|PLIN1 REV__ENSG00000166819|ENST00000300055|PLIN1 MULTI-MSMS UPN48_class_I_Rep_1 5 515.7823486328125 2 515.782025 1029.5495 0.23834 0.00012293 0.45611 0.00023525 0.69445 0.00035819 515.7823404217078 48.412 0.46427 51.936 51.672 52.136 3.5239 51 29 2 0 0 0 0.30667 1 9623 9623 13.508 0.97634 1 110740 + 53068 20191 33031 33048 61186 61186 0.035903405860153725 VYICIKEK 8 Unmodified _VYICIKEK_ 0 0 0 REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|31|1|sense REV__L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|31|1|sense MSMS UPN47_class_I_Rep_2 3 498.283203125 2 498.283346 994.552139 NaN NaN NaN NaN NaN NaN NaN 35.508 1 38.92 38.42 39.42 3.4114 0 0 0 0.40738 1 6555 6555 0.79363 0 1 + 53069 24555 33032 33049 61187 61187 0.05464472719290825 VYIEYNFGL 9 Unmodified _VYIEYNFGL_ 0 0 0 REV__nc|ENSG00000152208|O43424-2|GRID2 REV__nc|ENSG00000152208|O43424-2|GRID2 MSMS UPN48_class_I_Rep_3 7 559.2692260742188 2 559.281857 1116.54916 NaN NaN NaN NaN NaN NaN NaN 63.575 1 67.084 66.584 67.584 3.5091 0 0 0 0.1724 1 14225 14225 18.135 1.0221 1 + 53070 19673 33033 33050 61188 61188 -0.004450791338513227 VYIFRADRR 9 Unmodified _VYIFRADRR_ 0 0 0 ENSG00000144668|ENST00000264741|ITGA9 ENSG00000144668|ENST00000264741|ITGA9 ENSG00000144668|ENST00000264741|ITGA9 MSMS UPN48_class_I_Rep_2 6 598.3392944335938 2 598.338364 1194.66217 NaN NaN NaN NaN NaN NaN NaN 41.332 1 45.082 44.582 45.582 3.7508 0 0 0 0.36505 1 7539 7539 7.2892 0.56607 1 53071 3366 33034 33051 61189 61189 0.07263034102675192 VYIHGFVYI 9 Unmodified _VYIHGFVYI_ 0 0 0 L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|29|1|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|29|1|sense L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|29|1|sense MSMS UPN47_class_I_Rep_1 2 555.8021240234375 2 555.80276 1109.59097 NaN NaN NaN NaN NaN NaN NaN 77.627 1 81.056 80.556 81.556 3.4289 0 0 0 0.381 1 19269 19269 5.2307 0 1 53072 11312 33035 33052 61190 61190 0.04055521345321722 VYIHNGILFG 10 Unmodified _VYIHNGILFG_ 0 0 0 chr12:9969270-9971577|49|31.45|0.72|5.44|+|2|TE_info:L1MA4,L1MA4_dup7488,L1,LINE,donor,+,9968882,9969270|None,CLEC12A|1;L1MA4A_dup1022|chr3:31653765-31654956:+|1.7648192979460593|0.2103472903729107|3.07|151.0|35|3|sense chr12:9969270-9971577|49|31.45|0.72|5.44|+|2|TE_info:L1MA4,L1MA4_dup7488,L1,LINE,donor,+,9968882,9969270|None,CLEC12A|1 chr12:9969270-9971577|49|31.45|0.72|5.44|+|2|TE_info:L1MA4,L1MA4_dup7488,L1,LINE,donor,+,9968882,9969270|None,CLEC12A|1 MSMS UPN48_class_I_Rep_1 5 566.8115844726562 2 566.811116 1131.60768 NaN NaN NaN NaN NaN NaN NaN 51.656 1 55.179 54.679 55.679 3.5227 0 0 0 0.53105 1 10675 10675 1.8442 0 1 53073 585 33036 33053 61191 61191 0.04714022231269155 VYIHPSSALF 10 Unmodified _VYIHPSSALF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN48_class_I_Rep_1 5 567.3032836914062 2 567.303124 1132.5917 0.53255 0.00030212 0.083959 4.763E-05 0.61651 0.00034975 567.3032260787245 58.182 0.71525 61.669 61.362 62.077 3.487 73 41 2 0 0 0 0.35076 2 12698 12635;12698 24.021 6.9077 1 133810 53074 1037 33037 33054 61192;61193 61193 0.030703159943413993 VYIHPSSALF 10 Unmodified _VYIHPSSALF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS UPN48_class_I_Rep_2 6 567.3032836914062 2 567.303124 1132.5917 0.58209 0.00033022 0.30737 0.00017437 0.88945 0.00050459 567.3032735410006 58.223 0.70216 61.721 61.403 62.105 3.4987 65 41 2 0 0 0 0.40227 2 12677 12677;12724 19.257 4.4187 1 195120 53075 1037 33037 33054 61194;61195 61194 0.030703159943413993 VYIHPSSALF 10 Unmodified _VYIHPSSALF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MATCH UPN48_class_I_Rep_3 7 2 567.303124 1132.5917 0.38693 0.00021951 0.59281 0.0003363 0.97974 0.00055581 567.3033851469537 58.087 0.67976 61.618 61.249 61.928 3.5317 -0.051217 0.00029737 NaN 24.021 78 44 2 NaN NaN NaN NaN 0 NaN NaN 0 174970 53076 1037 33037 33054 0.030703159943413993 VYIHSGVLIS 10 Unmodified _VYIHSGVLIS_ 0 0 0 L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|90|2|sense L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|90|2|sense L1MA1_dup2328|chrX:56739517-56744414:-|5.065423260989172|0.154135308160572|5.04|151.0|90|2|sense MSMS UPN48_class_I_Rep_2 6 544.3114624023438 2 544.310949 1086.60735 NaN NaN NaN NaN NaN NaN NaN 48.923 1 52.64 52.14 53.14 3.7175 0 0 0 0.53105 1 9828 9828 3.5965 1.019 1 53077 9279 33038 33055 61196 61196 0.06750602511442594 VYIIRNCFY 9 Unmodified _VYIIRNCFY_ 0 0 0 REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|79|2|anti-sense REV__L1PA10_dup4689|chr10:48824953-48826568:-|1.4998598223116069|0.1356116510066841|3.47|151.0|79|2|anti-sense MSMS UPN48_class_I_Rep_3 7 595.8035278320312 2 595.804977 1189.5954 NaN NaN NaN NaN NaN NaN NaN 65.378 1 68.885 68.385 69.385 3.5077 0 0 0 0.38299 1 14770 14770 4.756 1.8668 1 + 53078 28969 33039 33056 61197 61197 0.008186624965901501 VYIKMSKY 8 Unmodified _VYIKMSKY_ 0 0 0 REV__ENST00000470197.5_1_2:75917809-75928342:-|nuORF REV__ENST00000470197.5_1_2:75917809-75928342:-|nuORF MSMS UPN48_class_I_Rep_1 5 516.2852172851562 2 516.283346 1030.55214 NaN NaN NaN NaN NaN NaN NaN 48.656 1 52.18 51.68 52.68 3.5239 0 0 0 0.39167 1 9749 9749 11.114 4.7604 1 + 53079 17530 33040 33057 61198 61198 0.03808472719288147 VYIMRYMVP 9 Unmodified _VYIMRYMVP_ 0 0 0 L1M5_dup3322|chr1:207779510-207779904:-|1.1152714566669997|0.0914195136665472|3.61|151.0|24|2|anti-sense L1M5_dup3322|chr1:207779510-207779904:-|1.1152714566669997|0.0914195136665472|3.61|151.0|24|2|anti-sense L1M5_dup3322|chr1:207779510-207779904:-|1.1152714566669997|0.0914195136665472|3.61|151.0|24|2|anti-sense MSMS UPN47_class_I_Rep_1 2 586.3037109375 2 586.303755 1170.59296 NaN NaN NaN NaN NaN NaN NaN 70.861 1 74.233 73.733 74.733 3.3713 0 0 0 0.38299 1 17244 17244 4.756 0.81161 1 53080 9141 33041 33058 61199 61199 0.014484907672567715 VYINTAQEF 9 Unmodified _VYINTAQEF_ 0 0 0 ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS ENST00000600510.1_1_19:12786654-12786995:-|nuORF ENST00000600510.1_1_19:12786654-12786995:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 542.7692260742188 2 542.769114 1083.52368 0.48077 0.00026095 -0.25219 -0.00013688 0.22858 0.00012407 542.7689540681439 56.369 0.51385 59.871 59.509 60.022 3.5014 62 40 2 0 0 0 0.0060665 3 12078 12078;12113;12121 90.135 37.605 1 181580 53081 1406 33042 33059 61200;61201;61202 61200 -0.014745536562941197 VYINTAQEF 9 Unmodified _VYINTAQEF_ 0 0 0 ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS ENST00000600510.1_1_19:12786654-12786995:-|nuORF ENST00000600510.1_1_19:12786654-12786995:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 542.7694702148438 2 542.769114 1083.52368 0.59885 0.00032504 -0.6301 -0.000342 -0.031253 -1.6963E-05 542.7689075723662 56.188 0.47635 59.721 59.522 59.999 3.5333 72 38 3 0 0 0 0.0055879 2 12068 12027;12068 96.367 42.702 1 174050 53082 1406 33042 33059 61203;61204 61204 -0.014745536562941197 VYINTAQEF 9 Unmodified _VYINTAQEF_ 0 0 0 ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS ENST00000600510.1_1_19:12786654-12786995:-|nuORF ENST00000600510.1_1_19:12786654-12786995:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 542.7694091796875 2 542.769114 1083.52368 0.41013 0.00022261 -0.18443 -0.0001001 0.2257 0.00012251 542.768885725098 56.093 0.50266 59.648 59.476 59.979 3.5554 73 43 2 0 0 0 0.0060665 2 11960 11960;12001 90.135 44.114 1 160080 53083 1406 33042 33059 61205;61206 61205 -0.014745536562941197 VYIPERVL 8 Unmodified _VYIPERVL_ 0 0 0 L1ME5_dup1887|chrX:53401213-53401702:-|1.4389469891321198|0.1526047544029623|3.24|151.0|1|1|sense L1ME5_dup1887|chrX:53401213-53401702:-|1.4389469891321198|0.1526047544029623|3.24|151.0|1|1|sense L1ME5_dup1887|chrX:53401213-53401702:-|1.4389469891321198|0.1526047544029623|3.24|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.7951354980469 2 494.794935 987.575317 -0.13401 -6.6307E-05 0.14856 7.3505E-05 0.014547 7.1977E-06 494.7949438321562 36.658 1.3743 40.057 39.586 40.96 3.3988 210 102 4 0 0 0 0.82752 1 6846 6846 15.847 0 1 349140 53084 12968 33043 33060 61207 61207 0.08103234828286077 VYIPERVL 8 Unmodified _VYIPERVL_ 0 0 0 L1ME5_dup1887|chrX:53401213-53401702:-|1.4389469891321198|0.1526047544029623|3.24|151.0|1|1|sense L1ME5_dup1887|chrX:53401213-53401702:-|1.4389469891321198|0.1526047544029623|3.24|151.0|1|1|sense L1ME5_dup1887|chrX:53401213-53401702:-|1.4389469891321198|0.1526047544029623|3.24|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.79473876953125 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.82752 1 6926 6926 10.824 0.75 1 289630 53085 12968 33043 33060 61208 61208 0.08103234828286077 VYIQFYGSVN 10 Unmodified _VYIQFYGSVN_ 0 0 0 ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|71|2|anti-sense ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|71|2|anti-sense ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 595.8171997070312 2 595.298039 1188.58152 0.58086 0.00034579 -0.057596 -3.4287E-05 0.52327 0.0003115 595.2980839293153 60.597 0.32041 64.071 63.857 64.177 3.4737 33 22 2 0 0 0 0.51565 1 13375 13375 10.074 0.52995 1 77615 53086 7752 33044 33061 61209 61209 -0.00522291730840152 VYIQFYGSVN 10 Unmodified _VYIQFYGSVN_ 0 0 0 ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|71|2|anti-sense ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|71|2|anti-sense ERVL-E-int_dup322|chr1:85811788-85812942:+|1.2242706407657638|0.0067061160394964|7.51|150.0|71|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 595.818603515625 2 595.298039 1188.58152 0.55402 0.00032981 -0.35181 -0.00020943 0.20222 0.00012038 595.2979437817525 60.452 0.30257 63.931 63.772 64.075 3.4785 36 25 2 0 0 0 0.51565 1 13373 13373 10.074 0.52995 1 123320 53087 7752 33044 33061 61210 61210 -0.00522291730840152 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS UPN48_class_I_Rep_1 5 581.2744140625 2 580.772188 1159.52982 0.45102 0.00026194 -0.51849 -0.00030112 -0.067473 -3.9187E-05 580.7718269537177 35.641 0.67733 39.151 38.91 39.588 3.5101 103 66 2 0 0 0 0.09884 4 5922 5853;5866;5904;5922 34.102 20.665 1 154040 53088 1708 33045 33062 61211;61212;61213;61214 61214 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS UPN48_class_I_Rep_2 6 580.7725219726562 2 580.772188 1159.52982 0.45777 0.00026586 -0.21075 -0.0001224 0.24702 0.00014346 580.772043703091 35.463 0.67308 39.15 38.865 39.538 3.6877 113 64 3 0 0 0 0.09884 3 5857 5821;5857;5899 34.102 19.521 1 170990 53089 1708 33045 33062 61215;61216;61217 61216 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS UPN48_class_I_Rep_3 7 580.77197265625 2 580.772188 1159.52982 0.39391 0.00022877 -0.28098 -0.00016318 0.11293 6.5586E-05 580.7719585084163 35.365 0.68635 39.037 38.827 39.513 3.6721 125 71 2 0 0 0 0.13631 3 5770 5700;5732;5770 26.884 15.243 1 159930 53090 1708 33045 33062 61218;61219;61220 61220 -0.043560354247802024 VYISGSVVGFF 11 Unmodified _VYISGSVVGFF_ 0 0 0 ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|119|3|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|119|3|anti-sense ERVL-E-int_dup1413|chr2:208280271-208282358:-|2.3240127013041687|0.0507546554081339|5.52|151.0|119|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.3134765625 2 587.810782 1173.60701 0.55974 0.00032902 0.10471 6.155E-05 0.66445 0.00039057 587.8107047164062 72.561 0.45559 76.098 75.714 76.17 3.5373 95 41 3 0 0 0 0.30752 1 16861 16861 24.021 1.2843 1 241230 53091 7740 33046 33063 61221 61221 0.027151827915531612 VYISSLALL 9 Unmodified _VYISSLALL_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS UPN48_class_I_Rep_3 7 489.79693603515625 2 489.797143 977.579734 0.26751 0.00013103 -0.35815 -0.00017542 -0.090632 -4.4391E-05 489.79678893849257 83.763 0.25827 87.491 87.278 87.537 3.7281 42 31 2 0 0 0 0.074367 1 19862 19862 39.957 11.47 1 71781 53092 2114 33047 33064 61222 61222 0.09004699251181592 VYIWHKRS 8 Unmodified _VYIWHKRS_ 0 0 0 ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26 ENST00000486652.5_1_1:224577539-224589708:-|nuORF ENST00000486652.5_1_1:224577539-224589708:-|nuORF MSMS UPN46_class_I_Rep_3 1 544.8042602539062 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 93.864 1 93.864 93.364 94.364 0 0 0 0 0.40625 1 22760 22760 2.3027 0 1 53093 3973 33048 33065 61223 61223 0.0524057515392542 VYIYMYHIF 9 Unmodified _VYIYMYHIF_ 0 0 0 L1PREC2_dup1634|chr3:186935002-186935709:-|1.310101834430361|0.0579522989529934|4.5|151.0|30|1|anti-sense L1PREC2_dup1634|chr3:186935002-186935709:-|1.310101834430361|0.0579522989529934|4.5|151.0|30|1|anti-sense L1PREC2_dup1634|chr3:186935002-186935709:-|1.310101834430361|0.0579522989529934|4.5|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_1 5 624.8071899414062 2 624.809728 1247.6049 NaN NaN NaN NaN NaN NaN NaN 62.212 1 65.679 65.179 66.179 3.4674 0 0 0 0.381 1 13906 13906 5.2307 0.33366 1 53094 15422 33049 33066 61224 61224 -0.008995692179041725 VYKDLLVLF 9 Unmodified _VYKDLLVLF_ 0 0 0 FBXO42|p.R603Tfs*50|1|0.23|ENSG00000037637|chr1:16251017-16251018|-/T|frameshift_variant;ENSG00000037637|ENST00000375592|FBXO42 FBXO42|p.R603Tfs*50|1|0.23|ENSG00000037637|chr1:16251017-16251018|-/T|frameshift_variant FBXO42|p.R603Tfs*50|1|0.23|ENSG00000037637|chr1:16251017-16251018|-/T|frameshift_variant MULTI-SECPEP UPN48_class_I_Rep_2 6 555.8135986328125 2 555.333893 1108.65323 0.49142 0.0002729 0.55096 0.00030597 1.0424 0.00057887 555.3342995877231 79.761 0.17033 83.406 83.264 83.434 3.6446 28 19 2 0 0 0 0.043847 1 18958 18958 39.95 14.55 1 89723 53095 854 33050 33067 61225 61225 0.10325247693640449 VYKIGGIGT 9 Unmodified _VYKIGGIGT_ 0 0 0 nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000514975.1_1_4:106406529-106406643:+|nuORF;ENST00000419025.1_1_3:183744750-183744864:-|nuORF;ENST00000417549.1_1_13:28788954-28789521:+|nuORF nc|ENSG00000196205|Q5VTE0|EEF1A1P5 nc|ENSG00000196205|Q5VTE0|EEF1A1P5 MULTI-MSMS UPN47_class_I_Rep_2 3 454.2652893066406 2 454.26601 906.517468 -0.51096 -0.00023211 0.13986 6.3535E-05 -0.37109 -0.00016857 454.26597808296214 22.971 0.49632 26.416 26.21 26.707 3.4447 48 41 2 0 0 0 0.50582 1 2792 2792 0 0 1 50168 53096 3732 33051 33068 61226 61226 0.06046972902879588 VYKINFNEC 9 Unmodified _VYKINFNEC_ 0 0 0 L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|20|3|sense L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|20|3|sense L1MEf_dup735|chr1:229315749-229316514:-|1.7132837954735294|0.362704115294409|2.24|151.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 565.271728515625 2 565.270967 1128.52738 NaN NaN NaN NaN NaN NaN NaN 50.492 1 54.12 53.62 54.62 3.6285 0 0 0 0.38784 1 11076 11076 3.5965 0 1 53097 13316 33052 33069 61227 61227 -0.03174207154074793 VYKKLTSL 8 Unmodified _VYKKLTSL_ 0 0 0 L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense;L1M2_dup1948|chr4:9043455-9044608:-|1.1446298643957|0.1488464771303601|2.94|150.0|16|2|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 476.296630859375 2 476.29731 950.580068 -0.31226 -0.00014873 -0.63371 -0.00030184 -0.94598 -0.00045057 476.29699692203985 34.595 0.74122 38.281 37.963 38.704 3.6859 73 59 2 0 0 0 0.82752 1 6231 6231 8.5933 0 1 110640 53098 8665 33053 33070 61228 61228 0.10280118971036245 VYKKLTSL 8 Unmodified _VYKKLTSL_ 0 0 0 L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense;L1M2_dup1948|chr4:9043455-9044608:-|1.1446298643957|0.1488464771303601|2.94|150.0|16|2|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 476.29693603515625 2 476.29731 950.580068 -0.26676 -0.00012705 -0.55763 -0.0002656 -0.82438 -0.00039265 476.29702455530116 34.947 0.83934 38.372 38.059 38.898 3.4253 71 58 2 0 0 0 0.82752 1 6430 6430 4.756 0 1 90040 53099 8665 33053 33070 61229 61229 0.10280118971036245 VYKKLTSL 8 Unmodified _VYKKLTSL_ 0 0 0 L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense;L1M2_dup1948|chr4:9043455-9044608:-|1.1446298643957|0.1488464771303601|2.94|150.0|16|2|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|48|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 476.2958679199219 2 476.29731 950.580068 -0.50721 -0.00024158 -0.19805 -9.4329E-05 -0.70526 -0.00033591 476.2971699993705 35.228 0.79498 38.492 38.162 38.957 3.2639 86 54 2 0 0 0 0.82752 2 6539 6539;6547 8.5933 0 1 111220 53100 8665 33053 33070 61230;61231 61230 0.10280118971036245 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MSMS UPN48_class_I_Rep_1 5 565.8348388671875 2 565.83406 1129.65357 NaN NaN NaN NaN NaN NaN NaN 51.459 1 54.982 54.482 55.482 3.5227 0 0 0 0.37891 1 10615 10615 5.7319 0.50118 1 53101 4168 33054 33071 61232 61232 0.09392667413499112 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS UPN48_class_I_Rep_3 7 565.8341674804688 2 565.83406 1129.65357 0.32197 0.00018218 -0.15349 -8.6851E-05 0.16848 9.5333E-05 565.8343428326529 51.357 0.22797 54.967 54.834 55.062 3.6105 19 15 2 0 0 0 0.32682 1 10527 10527 12.241 6.5088 1 113400 53102 4168 33054 33071 61233 61233 0.09392667413499112 VYKQGLRLE 9 Unmodified _VYKQGLRLE_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|145|1|anti-sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|145|1|anti-sense MSMS UPN46_class_I_Rep_3 1 553.32177734375 2 553.321848 1104.62914 NaN NaN NaN NaN NaN NaN NaN 93.77 1 93.77 93.27 94.27 0 0 0 0 0.39518 1 22733 22733 1.8442 0 1 + 53103 31502 33055 33072 61234 61234 0.08101407259982807 VYKRFVGL 8 Unmodified _VYKRFVGL_ 0 0 0 REV__nc|ENSG00000151490|Q16827-5|PTPRO REV__nc|ENSG00000151490|Q16827-5|PTPRO MULTI-MSMS UPN48_class_I_Rep_3 7 491.2967224121094 2 491.297645 980.580737 0.24265 0.00011921 -3.8398 -0.0018865 -3.5972 -0.0017673 491.2955240393019 107.6 0.090088 111.28 111.25 111.34 3.6813 20 12 2 0 0 0 0.82752 2 25379 25379;25382 8.5933 1.304 1 1540600 + 53104 19657 33056 33073 61235;61236 61235 0.08966958410769621 VYKRGVKQR 9 Unmodified _VYKRGVKQR_ 0 0 0 HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|179|1|anti-sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|179|1|anti-sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|179|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.34716796875 2 567.348732 1132.68291 0.46304 0.00026271 -1.4913 -0.00084609 -1.0283 -0.00058339 567.3475063642366 105.4 0.074677 105.4 105.34 105.41 0 12 10 2 0 0 0 0.48846 1 25710 25710 1.8442 0 1 64113 53105 8388 33057 33074 61237 61237 0.1218762448236248 VYKRGVKQR 9 Unmodified _VYKRGVKQR_ 0 0 0 HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|179|1|anti-sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|179|1|anti-sense HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|179|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 567.348732 1132.68291 0.46304 0.00026271 -1.4913 -0.00084609 -1.0283 -0.00058339 567.3475063642366 105.4 0.074677 105.4 105.34 105.41 0 0 0 NaN 1.8442 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 64113 53106 8388 33057 33074 0.1218762448236248 VYKTIMEQF 9 Unmodified _VYKTIMEQF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MSMS UPN48_class_I_Rep_1 5 579.7967529296875 2 579.796817 1157.57908 NaN NaN NaN NaN NaN NaN NaN 54.293 1 57.807 57.307 58.307 3.5143 0 0 0 0.36857 1 11481 11481 7.1017 3.5052 1 53107 4740 33058 33075 61238 61238 0.006595365398197828 VYKTIMEQF 9 Unmodified _VYKTIMEQF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MSMS UPN48_class_I_Rep_3 7 579.7979125976562 2 579.796817 1157.57908 NaN NaN NaN NaN NaN NaN NaN 54.148 1 57.717 57.217 58.217 3.5694 0 0 0 0.32271 1 11355 11355 9.544 4.3133 1 53108 4740 33058 33075 61239 61239 0.006595365398197828 VYKTLAFPHG 10 Unmodified _VYKTLAFPHG_ 0 0 0 LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|5|2|sense LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|5|2|sense LTR9D_dup369|chr9:90890797-90891142:-|1.1528932432385692|0.0401670430269659|4.84|151.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 566.7930297851562 2 566.811116 1131.60768 NaN NaN NaN NaN NaN NaN NaN 43.494 1 47.133 46.633 47.633 3.6385 0 0 0 0.53105 1 8100 8100 3.9444 0 1 53109 15735 33059 33076 61240 61240 0.04714022231269155 VYKWWQLP 8 Unmodified _VYKWWQLP_ 0 0 0 ENST00000587908.1_1_19:56832840-56833431:-|nuORF;nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2 ENST00000587908.1_1_19:56832840-56833431:-|nuORF ENST00000587908.1_1_19:56832840-56833431:-|nuORF MSMS UPN48_class_I_Rep_3 7 560.7656860351562 2 560.302927 1118.5913 NaN NaN NaN NaN NaN NaN NaN 36.214 1 39.881 39.381 40.381 3.6667 0 0 0 0.40746 1 5967 5967 0.69038 0 1 53110 2112 33060 33077 61241 61241 0.03674941065173698 VYLCSFRLL 9 Unmodified _VYLCSFRLL_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|277|3|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|277|3|anti-sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|277|3|anti-sense MSMS UPN48_class_I_Rep_3 7 557.3089599609375 2 557.309895 1112.60524 NaN NaN NaN NaN NaN NaN NaN 47.373 1 51.009 50.509 51.509 3.6363 0 0 0 0.39598 1 9290 9290 1.6526 0 1 53111 15356 33061 33078 61242 61242 0.053438505019585136 VYLCYSRLL 9 Unmodified _VYLCYSRLL_ 0 0 0 REV__ENSG00000163933|ENST00000296292|RFT1 REV__ENSG00000163933|ENST00000296292|RFT1 MULTI-MSMS UPN48_class_I_Rep_2 6 565.8057861328125 2 565.307352 1128.60015 0.58026 0.00032803 0.03448 1.9492E-05 0.61474 0.00034752 565.3078525479522 54.199 0.37186 57.781 57.505 57.877 3.5817 30 22 2 0 0 0 0.21527 1 11450 11450 19.257 0 1 134020 + 53112 20018 33062 33079 61243 61243 0.04099546639349683 VYLFLPRQP 9 Unmodified _VYLFLPRQP_ 0 0 0 REV__nc|ENSG00000183876|Q5FYB1-2|ARSI REV__nc|ENSG00000183876|Q5FYB1-2|ARSI MSMS UPN48_class_I_Rep_2 6 566.7403564453125 2 566.829309 1131.64407 NaN NaN NaN NaN NaN NaN NaN 20.2 1 23.85 23.35 24.35 3.6497 0 0 0 0.40038 1 1692 1692 0.6015 0 1 + 53113 20805 33063 33080 61244 61244 0.08350899127958655 VYLFLPSMM 9 Unmodified _VYLFLPSMM_ 0 0 0 nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC;ENST00000427795.2_1_3:14189293-14190394:-|nuORF nc|ENSG00000154767|Q01831-2|XPC nc|ENSG00000154767|Q01831-2|XPC MULTI-MSMS UPN48_class_I_Rep_1 5 550.7797241210938 2 550.779582 1099.54461 0.49496 0.00027262 0.49487 0.00027257 0.98984 0.00054518 550.7796911078348 51.328 0.55192 54.852 54.537 55.089 3.5246 80 38 3 0 0 0 0.32219 1 10549 10549 12.532 3.1841 1 181040 53114 3683 33064 33081 61245 61245 -0.0011800287263667997 VYLFLTFW 8 Unmodified _VYLFLTFW_ 0 0 0 L1MB3_dup9115|chrX:15689529-15689911:-|1.3948510195069|0.081098077096201|4.1|151.0|31|3|anti-sense L1MB3_dup9115|chrX:15689529-15689911:-|1.3948510195069|0.081098077096201|4.1|151.0|31|3|anti-sense L1MB3_dup9115|chrX:15689529-15689911:-|1.3948510195069|0.081098077096201|4.1|151.0|31|3|anti-sense MSMS UPN48_class_I_Rep_1 5 544.7943115234375 2 544.794404 1087.57425 NaN NaN NaN NaN NaN NaN NaN 63.532 1 66.99 66.49 67.49 3.4578 0 0 0 0.40738 1 14310 14310 0.79363 0 1 53115 10470 33065 33082 61246 61246 0.03397020459351552 VYLGFNFGIF 10 Unmodified _VYLGFNFGIF_ 0 0 0 REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|55|3|anti-sense REV__L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_2 6 588.8068237304688 2 588.808042 1175.60153 NaN NaN NaN NaN NaN NaN NaN 50.862 1 54.53 54.03 55.03 3.6679 0 0 0 0.53105 1 10426 10426 6.7232 1.4925 1 + 53116 28029 33066 33083 61247 61247 0.020755039997538915 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-SECPEP UPN48_class_I_Rep_1 5 409.1107482910156 3 408.876857 1223.60874 -0.15348 -6.2755E-05 0.24235 9.9093E-05 0.088873 3.6338E-05 408.87684980473193 48.523 0.59623 52.047 51.722 52.318 3.5239 60 37 2 0 0 0 0.1196 1 9690 9690 9.544 4.647 1 110060 53117 5395 33067 33084 61248 61248 0.005882366001742412 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH UPN48_class_I_Rep_2 6 3 408.876857 1223.60874 -0.015348 -6.2754E-06 -0.095536 -3.9063E-05 -0.11088 -4.5338E-05 408.87674001309534 48.286 0.68245 52.022 51.634 52.317 3.7361 0.022886 -7.8929E-05 NaN 9.544 83 48 2 NaN NaN NaN NaN 0 NaN NaN 0 151360 53118 5395 33067 33084 0.005882366001742412 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MATCH UPN48_class_I_Rep_3 7 3 408.876857 1223.60874 0.0095686 3.9124E-06 -0.11807 -4.8276E-05 -0.1085 -4.4364E-05 408.87675433247875 48.295 0.60966 51.929 51.739 52.348 3.6339 -0.07021 -0.00010657 NaN 9.544 78 43 2 NaN NaN NaN NaN 0 NaN NaN 0 164970 53119 5395 33067 33084 0.005882366001742412 VYLIEDPE 8 Unmodified _VYLIEDPE_ 0 0 0 REV__nc|ENSG00000167601|P30530-2|AXL REV__nc|ENSG00000167601|P30530-2|AXL MSMS UPN48_class_I_Rep_2 6 489.26910400390625 2 489.244941 976.475328 NaN NaN NaN NaN NaN NaN NaN 36.657 1 40.359 39.859 40.859 3.7021 0 0 0 0.40364 1 6184 6184 5.7604 1.0044 1 + 53120 20226 33068 33085 61249 61249 -0.013850472961962623 VYLKGRRP 8 Unmodified _VYLKGRRP_ 0 0 0 REV__L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|25|3|sense REV__L1MC4_dup3918|chr2:233110968-233111778:-|3.379081471668304|0.0150518950139712|7.81|151.0|25|3|sense MSMS UPN46_class_I_Rep_3 1 494.8202209472656 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 23.013 1 23.013 22.513 23.513 0 0 0 0 0.40746 1 2820 2820 0.69038 0 1 + 53121 26907 33069 33086 61250 61250 0.10348879016555657 VYLKMTWRM 9 Unmodified _VYLKMTWRM_ 0 0 0 L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|20|1|sense L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|20|1|sense L1PA6_dup1670|chr4:118780933-118783242:-|1.703111394555428|0.0910198517914983|4.23|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 614.276123046875 2 614.322479 1226.63041 NaN NaN NaN NaN NaN NaN NaN 53.494 1 53.494 52.994 53.994 0 0 0 0 0.39428 1 11514 11514 2.0598 0.86641 1 53122 14569 33070 33087 61251 61251 0.026155820328540358 VYLKPQVPF 9 Unmodified _VYLKPQVPF_ 0 0 0 Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|16|1|anti-sense Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|16|1|anti-sense Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|16|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 545.31689453125 2 545.81841 1089.62227 0.48177 0.00026296 0.33692 0.00018389 0.81869 0.00044686 545.818568610287 81.065 0.28165 84.721 84.494 84.776 3.6567 62 36 2 0 0 0 0.11873 1 19220 19220 8.5933 8.5933 1 265250 53123 8469 33071 33088 61252 61252 0.08104094379405069 VYLLHRRKKEQ 11 Unmodified _VYLLHRRKKEQ_ 0 0 0 REV__nc|ENSG00000089505|Q8IZ96-7|CMTM1 REV__nc|ENSG00000089505|Q8IZ96-7|CMTM1 MULTI-MSMS UPN48_class_I_Rep_2 6 490.6267395019531 3 490.628165 1468.86267 0.26373 0.00012939 -2.3256 -0.001141 -2.0619 -0.0010116 490.6269508319452 103.04 0.097702 106.75 106.68 106.78 3.7108 15 13 2 0 0 0 0.68024 1 24398 24398 0.50596 0 1 136060 + 53124 18007 33072 33089 61253 61253 0.14698883699497856 VYLLHRRKKEQ 11 Unmodified _VYLLHRRKKEQ_ 0 0 0 REV__nc|ENSG00000089505|Q8IZ96-7|CMTM1 REV__nc|ENSG00000089505|Q8IZ96-7|CMTM1 MULTI-MATCH UPN48_class_I_Rep_1 5 3 490.628165 1468.86267 0.15395 7.553E-05 -2.0464 -0.001004 -1.8924 -0.00092849 490.62708868948215 103.04 0.022194 106.66 106.65 106.67 3.6164 -0.0896 -0.00014639 NaN 0.50596 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 62373 + 53125 18007 33072 33089 0.14698883699497856 VYLLLYVYL 9 Unmodified _VYLLLYVYL_ 0 0 0 REV__MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|8|1|sense REV__MER51-int_dup366|chr10:123022558-123024587:-|1.0953310419007938|0.0734049418002676|3.9|150.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 579.84423828125 2 579.844093 1157.67363 NaN NaN NaN NaN NaN NaN NaN 97.311 1 97.311 96.811 97.811 0 0 0 0 0.40038 1 23672 23672 0.6015 0 1 + 53126 31387 33073 33090 61254 61254 0.10110418353474415 VYLMIFPI 8 Unmodified _VYLMIFPI_ 0 0 0 REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.062902531717513|0.3950341382787979|1.43|151.0|77|1|anti-sense REV__L1PB1_dup12829|chr21:46585548-46587567:+|1.062902531717513|0.3950341382787979|1.43|151.0|77|1|anti-sense MSMS UPN48_class_I_Rep_1 5 498.285400390625 2 498.285357 994.556161 NaN NaN NaN NaN NaN NaN NaN 21.301 1 24.854 24.354 25.354 3.5533 0 0 0 0.40738 1 1928 1928 0.79363 0 1 + 53127 30352 33074 33091 61255 61255 0.058665622129979056 VYLMLKMSL 9 2 Oxidation (M) _VYLM(Oxidation (M))LKM(Oxidation (M))SL_ VYLM(1)LKM(1)SL VYLM(50)LKM(50)SL 0 0 2 ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 565.3031616210938 2 565.303421 1128.59229 0.59463 0.00033614 -0.18685 -0.00010563 0.40777 0.00023052 565.3031756322866 54.518 0.71002 58.099 57.857 58.567 3.5817 75 45 2 0 0 0 0.048662 1 11514 11514 49.554 49.554 1 145930 53128 6600 33075 33092 61256 61256 177;178 0.03313651327562184 VYLMLKMSL 9 2 Oxidation (M) _VYLM(Oxidation (M))LKM(Oxidation (M))SL_ VYLM(1)LKM(1)SL VYLM(66)LKM(66)SL 0 0 2 ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 565.3033447265625 2 565.303421 1128.59229 0.30181 0.00017062 0.013445 7.6002E-06 0.31526 0.00017822 565.3033109414512 54.606 0.80065 58.175 57.735 58.536 3.5694 82 52 2 0 0 0 0.015319 3 11446 11392;11446;11487 66.457 66.457 1 140120 53129 6600 33075 33092 61257;61258;61259 61258 177;178 0.03313651327562184 VYLNQAIVG 9 Unmodified _VYLNQAIVG_ 0 0 0 REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 488.77679443359375 2 488.776742 975.538931 0.1272 6.2171E-05 -0.24503 -0.00011977 -0.11784 -5.7596E-05 488.7765120948708 71.361 0.6032 74.736 74.547 75.15 3.3751 70 48 2 0 0 0 0.41259 1 17436 17436 7.2892 0 1 115350 + 53130 22914 33076 33093 61260 61260 0.05018357931567152 VYLNQAIVG 9 Unmodified _VYLNQAIVG_ 0 0 0 REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 488.7764892578125 2 488.776742 975.538931 0.24904 0.00012172 -0.38973 -0.00019049 -0.1407 -6.8769E-05 488.77647125869726 71.705 0.45763 74.995 74.695 75.153 3.2899 63 36 2 0 0 0 0.41259 2 17530 17530;17570 7.2892 0 1 134560 + 53131 22914 33076 33093 61261;61262 61261 0.05018357931567152 VYLNQAIVG 9 Unmodified _VYLNQAIVG_ 0 0 0 REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 488.77679443359375 2 488.776742 975.538931 0.19177 9.373E-05 -0.11916 -5.8242E-05 0.072607 3.5488E-05 488.776614908959 71.568 0.5767 75.034 74.793 75.37 3.466 110 51 3 0 0 0 0.33654 4 16731 16731;16773;16801;16825 11.64 0 1 258090 + 53132 22914 33076 33093 61263;61264;61265;61266 61263 0.05018357931567152 VYLNQAIVG 9 Unmodified _VYLNQAIVG_ 0 0 0 REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 488.77667236328125 2 488.776742 975.538931 0.25035 0.00012237 -0.21931 -0.00010719 0.031047 1.5175E-05 488.77656658320797 71.453 0.51332 75.003 74.762 75.275 3.5505 85 50 2 0 0 0 0.25207 3 16717 16608;16682;16717 16.942 2.104 1 271640 + 53133 22914 33076 33093 61267;61268;61269 61269 0.05018357931567152 VYLNQAIVG 9 Unmodified _VYLNQAIVG_ 0 0 0 REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 488.77685546875 2 488.776742 975.538931 0.29374 0.00014357 -0.24649 -0.00012048 0.047257 2.3098E-05 488.77652810071294 71.357 0.65468 74.876 74.601 75.256 3.5185 100 59 2 0 0 0 0.33654 2 16589 16589;16626 11.64 0 1 259860 + 53134 22914 33076 33093 61270;61271 61270 0.05018357931567152 VYLNRTTY 8 Unmodified _VYLNRTTY_ 0 0 0 L1ME1_dup16655|chr9:92395034-92395834:-|1.2084060696683214|0.0093704771545478|7.01|149.0|32|1|anti-sense L1ME1_dup16655|chr9:92395034-92395834:-|1.2084060696683214|0.0093704771545478|7.01|149.0|32|1|anti-sense L1ME1_dup16655|chr9:92395034-92395834:-|1.2084060696683214|0.0093704771545478|7.01|149.0|32|1|anti-sense MSMS UPN48_class_I_Rep_1 5 515.2720336914062 2 515.271824 1028.5291 NaN NaN NaN NaN NaN NaN NaN 48.575 1 52.099 51.599 52.599 3.5239 0 0 0 0.37214 1 9724 9724 16.942 7.5949 1 53135 12249 33077 33094 61272 61272 0.015971699261854155 VYLNRTTY 8 Unmodified _VYLNRTTY_ 0 0 0 L1ME1_dup16655|chr9:92395034-92395834:-|1.2084060696683214|0.0093704771545478|7.01|149.0|32|1|anti-sense L1ME1_dup16655|chr9:92395034-92395834:-|1.2084060696683214|0.0093704771545478|7.01|149.0|32|1|anti-sense L1ME1_dup16655|chr9:92395034-92395834:-|1.2084060696683214|0.0093704771545478|7.01|149.0|32|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.2720336914062 2 515.271824 1028.5291 0.24539 0.00012644 -0.025821 -1.3305E-05 0.21957 0.00011314 515.27177830905 48.848 1.0208 52.477 52.042 53.063 3.6291 186 77 4 0 0 0 0.82752 1 9643 9643 23.148 8.743 1 1050900 53136 12249 33077 33094 61273 61273 0.015971699261854155 VYLPTHTSL 9 Unmodified _VYLPTHTSL_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MULTI-MSMS UPN48_class_I_Rep_1 5 515.781982421875 2 515.782025 1029.5495 0.23834 0.00012293 0.45611 0.00023525 0.69445 0.00035819 515.7823404217078 48.412 0.46427 51.936 51.672 52.136 3.5239 51 29 2 0 0 0 0.25207 1 9668 9668 16.942 16.942 1 110740 53137 737 33078 33095 61274 61274 0.035903405860153725 VYLPTHTSL 9 Unmodified _VYLPTHTSL_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MULTI-MSMS UPN48_class_I_Rep_3 7 515.7818603515625 2 515.782025 1029.5495 0.25563 0.00013185 0.6027 0.00031086 0.85833 0.00044271 515.7823523451821 48.353 0.49462 51.987 51.721 52.216 3.6339 61 33 2 0 0 0 0.25207 1 9630 9630 16.942 16.942 1 151850 53138 737 33078 33095 61275 61275 0.035903405860153725 VYLSNVVLF 9 Unmodified _VYLSNVVLF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS UPN48_class_I_Rep_1 5 527.3026123046875 2 527.302593 1052.59063 0.31809 0.00016773 -0.22947 -0.000121 0.088614 4.6726E-05 527.3023806713601 85.441 0.46062 89.047 88.858 89.318 3.6059 63 49 2 0 0 0 0.20317 1 20430 20430 20.415 1.1575 1 103010 53139 3163 33079 33096 61276 61276 0.06644101625443 VYLSNVVLF 9 Unmodified _VYLSNVVLF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS UPN48_class_I_Rep_2 6 527.3026123046875 2 527.302593 1052.59063 0.40378 0.00021292 -0.38522 -0.00020313 0.018558 9.7858E-06 527.3023810683825 85.389 0.34293 89.095 88.855 89.198 3.7058 71 45 3 0 0 0 0.041849 2 20314 20280;20314 52.268 8.4101 1 196000 53140 3163 33079 33096 61277;61278 61278 0.06644101625443 VYLSNVVLF 9 Unmodified _VYLSNVVLF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS UPN48_class_I_Rep_3 7 527.8040161132812 2 527.302593 1052.59063 0.48581 0.00025617 -0.49342 -0.00026018 -0.0076051 -4.0102E-06 527.3023444368397 85.347 0.28209 89.096 88.975 89.257 3.7494 61 35 2 0 0 0 0.15122 1 20229 20229 25.399 0 1 134660 53141 3163 33079 33096 61279 61279 0.06644101625443 VYLVLLSK 8 Unmodified _VYLVLLSK_ 0 0 0 REV__ENSG00000137040|ENST00000259569|RANBP6 REV__ENSG00000137040|ENST00000259569|RANBP6 MSMS UPN47_class_I_Rep_3 4 467.630126953125 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 84.656 1 88.018 87.518 88.518 3.3615 0 0 0 0.40738 1 21250 21250 0.79363 0 1 + 53142 19210 33080 33097 61280 61280 0.12045306976415304 VYLVLSWD 8 Unmodified _VYLVLSWD_ 0 0 0 REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|112|1|anti-sense REV__L1M1_dup2605|chr4:150976574-150979756:+|3.229572881519198|0.0312047364269645|6.69|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_1 2 497.7652893066406 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 111.32 1 114.89 114.39 115.39 3.572 0 0 0 0.40738 1 27455 27455 0.79363 0 1 + 53143 24050 33081 33098 61281 61281 0.02011553182978787 VYLVPPHY 8 Unmodified _VYLVPPHY_ 0 0 0 L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|152|2|anti-sense L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|152|2|anti-sense L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|152|2|anti-sense MSMS UPN48_class_I_Rep_3 7 493.7852478027344 2 494.268553 986.522553 NaN NaN NaN NaN NaN NaN NaN 37.508 1 41.171 40.671 41.671 3.663 0 0 0 0.40738 1 6331 6331 0.79363 0 1 53144 13098 33082 33099 61282 61282 0.028752767654623312 VYLVRRRQ 8 Unmodified _VYLVRRRQ_ 0 0 0 ENST00000366783.7_1_1:227083353-227083530:+|nuORF ENST00000366783.7_1_1:227083353-227083530:+|nuORF ENST00000366783.7_1_1:227083353-227083530:+|nuORF MSMS UPN48_class_I_Rep_1 5 545.3350830078125 2 545.335624 1088.6567 NaN NaN NaN NaN NaN NaN NaN 99.04 1 102.65 102.15 103.15 3.6065 0 0 0 0.40746 1 23908 23908 0.69038 0 1 53145 6339 33083 33100 61283 61283 0.11591355310883955 VYLWAALPV 9 Unmodified _VYLWAALPV_ 0 0 0 ENST00000443426.2_1_6:43395621-43402667:+|nuORF;nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10 ENST00000443426.2_1_6:43395621-43402667:+|nuORF ENST00000443426.2_1_6:43395621-43402667:+|nuORF MSMS UPN48_class_I_Rep_1 5 516.2846069335938 2 516.299853 1030.58515 NaN NaN NaN NaN NaN NaN NaN 48.377 1 51.9 51.4 52.4 3.5239 0 0 0 0.3264 1 9663 9663 9.3474 2.9933 1 53146 2475 33084 33101 61284 61284 0.07108422833630357 VYLWLKTV 8 Unmodified _VYLWLKTV_ 0 0 0 REV__Charlie1_dup1609|chr16:3765276-3765656:+|1.250958117902036|0.0293966546378134|5.41|151.0|13|3|sense REV__Charlie1_dup1609|chr16:3765276-3765656:+|1.250958117902036|0.0293966546378134|5.41|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 511.3056640625 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 63.241 1 66.497 65.997 66.997 3.2558 0 0 0 0.39242 1 14991 14991 10.824 0 1 + 53147 17270 33085 33102 61285 61285 0.09132709350706136 VYLYLRWCS 9 Unmodified _VYLYLRWCS_ 0 0 0 ENST00000582326.1_1_17:62499576-62499618:-|nuORF ENST00000582326.1_1_17:62499576-62499618:-|nuORF ENST00000582326.1_1_17:62499576-62499618:-|nuORF MSMS UPN48_class_I_Rep_2 6 601.8055419921875 2 601.804977 1201.5954 NaN NaN NaN NaN NaN NaN NaN 84.704 1 88.397 87.897 88.897 3.6937 0 0 0 0.381 1 20154 20154 5.2307 0 1 53148 7562 33086 33103 61286 61286 0.002666624965968367 VYLYLRWCS 9 Unmodified _VYLYLRWCS_ 0 0 0 ENST00000582326.1_1_17:62499576-62499618:-|nuORF ENST00000582326.1_1_17:62499576-62499618:-|nuORF ENST00000582326.1_1_17:62499576-62499618:-|nuORF MSMS UPN48_class_I_Rep_2 6 601.8062133789062 2 601.804977 1201.5954 NaN NaN NaN NaN NaN NaN NaN 85.253 1 88.959 88.459 89.459 3.7058 0 0 0 0.381 1 20271 20271 5.2307 0 1 53149 7562 33086 33103 61287 61287 0.002666624965968367 VYLYLRWCS 9 Unmodified _VYLYLRWCS_ 0 0 0 ENST00000582326.1_1_17:62499576-62499618:-|nuORF ENST00000582326.1_1_17:62499576-62499618:-|nuORF ENST00000582326.1_1_17:62499576-62499618:-|nuORF MSMS UPN48_class_I_Rep_3 7 601.804931640625 2 601.804977 1201.5954 NaN NaN NaN NaN NaN NaN NaN 85.263 1 89.013 88.513 89.513 3.7494 0 0 0 0.381 1 20218 20218 5.2307 0 1 53150 7562 33086 33103 61288 61288 0.002666624965968367 VYMCHIFFIL 10 Unmodified _VYMCHIFFIL_ 0 0 0 L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|185|1|anti-sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|207|3|anti-sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|185|1|anti-sense L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|185|1|anti-sense MSMS UPN48_class_I_Rep_1 5 643.3294677734375 2 643.32723 1284.63991 NaN NaN NaN NaN NaN NaN NaN 36.811 1 40.318 39.818 40.818 3.507 0 0 0 0.53105 1 6187 6187 0.45834 0.057624 1 53151 14713 33087 33104 61289 61289 0.008973503184279252 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(78)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN48_class_I_Rep_1 5 648.7840576171875 2 648.783907 1295.55326 0.60788 0.00039438 -0.22336 -0.00014491 0.38452 0.00024947 648.7837210820554 60.549 0.75853 64.022 63.645 64.403 3.4737 132 54 3 0 0 0 0.0055684 4 13383 13344;13383;13425;13462 78.06 59.914 1 498340 53152 3340 33088 33105 61290;61291;61292;61293 61291 107 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(110)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN48_class_I_Rep_2 6 648.7839965820312 2 648.783907 1295.55326 0.57156 0.00037082 -0.22481 -0.00014585 0.34675 0.00022497 648.7837515674765 60.438 0.76416 63.917 63.607 64.372 3.4785 155 68 3 0 0 0 0.010397 5 13351 13279;13311;13351;13388;13423 107.1 83.079 1 359590 53153 3340 33088 33105 61294;61295;61296;61297;61298 61296 107 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(78)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN48_class_I_Rep_3 7 649.2855834960938 2 648.783907 1295.55326 0.64312 0.00041725 -0.2429 -0.00015759 0.40023 0.00025966 648.7837244118873 60.323 0.81873 63.84 63.5 64.319 3.5169 146 77 3 0 0 0 0.0055684 4 13264 13186;13224;13264;13306 78.06 59.914 1 350160 53154 3340 33088 33105 61299;61300;61301;61302 61301 107 -0.08269357702488378 VYMFGKIL 8 Unmodified _VYMFGKIL_ 0 0 0 REV__L1MC5_dup10031|chr11:43463559-43463883:+|1.800787659377104|0.0723365021438822|4.64|151.0|23|3|anti-sense REV__L1MC5_dup10031|chr11:43463559-43463883:+|1.800787659377104|0.0723365021438822|4.64|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7742614746094 2 485.775157 969.53576 NaN NaN NaN NaN NaN NaN NaN 66.626 1 70.113 69.613 70.613 3.4866 0 0 0 0.40604 1 15236 15236 2.5775 0 1 + 53155 27043 33089 33106 61303 61303 0.04977391553211419 VYMLIIFP 8 Unmodified _VYMLIIFP_ 0 0 0 REV__L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|267|3|anti-sense REV__L1MA3_dup4700|chr9:17370006-17374578:+|1.3823329695493731|0.022930363246544|5.91|151.0|267|3|anti-sense MSMS UPN47_class_I_Rep_2 3 498.28570556640625 2 498.285357 994.556161 NaN NaN NaN NaN NaN NaN NaN 111.57 1 115.1 114.6 115.6 3.5226 0 0 0 0.40738 1 27161 27161 0.79363 0 1 + 53156 25038 33090 33107 61304 61304 0.058665622130320116 VYMRLKHLH 9 Unmodified _VYMRLKHLH_ 0 0 0 REV__MER11B_dup100|chr3:122443536-122444603:-|1.709927646121582|0.3105153873607571|2.46|151.0|3|1|sense REV__MER11B_dup100|chr3:122443536-122444603:-|1.709927646121582|0.3105153873607571|2.46|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 598.841796875 2 598.839685 1195.66482 NaN NaN NaN NaN NaN NaN NaN 41.607 1 45.253 44.753 45.753 3.6458 0 0 0 0.381 1 7535 7535 5.2307 0.90143 1 + 53157 31092 33091 33108 61305 61305 0.07481166235993442 VYMRWWWL 8 Unmodified _VYMRWWWL_ 0 0 0 L1MD2_dup1421|chr2:200917545-200917836:+|1.397612854702026|0.2258436155362721|2.63|151.0|2|1|sense L1MD2_dup1421|chr2:200917545-200917836:+|1.397612854702026|0.2258436155362721|2.63|151.0|2|1|sense L1MD2_dup1421|chr2:200917545-200917836:+|1.397612854702026|0.2258436155362721|2.63|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 620.3082275390625 2 620.310229 1238.60591 NaN NaN NaN NaN NaN NaN NaN 57.303 1 60.471 59.971 60.971 3.1681 0 0 0 0.40746 1 13232 13232 0.69038 0.16561 1 53158 11983 33092 33109 61306 61306 -0.003853100583228297 VYMVICLCIH 10 Unmodified _VYMVICLCIH_ 0 0 0 L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|80|3|anti-sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|80|3|anti-sense L1MB5_dup1820|chr4:17835492-17836659:-|1.480382323538877|0.1323017428933427|3.48|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_2 6 597.2949829101562 2 597.297616 1192.58068 NaN NaN NaN NaN NaN NaN NaN 59.574 1 63.061 62.561 63.561 3.4868 0 0 0 0.53105 1 13081 13081 4.3292 0.38484 1 53159 10600 33093 33110 61307 61307 -0.00790868967442293 VYMYMHWT 8 Unmodified _VYMYMHWT_ 0 0 0 REV__L1PA5_dup5965|chr8:129905952-129907600:+|2.4586232740981364|0.0461882190416326|5.73|151.0|22|2|sense REV__L1PA5_dup5965|chr8:129905952-129907600:+|2.4586232740981364|0.0461882190416326|5.73|151.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 565.7407836914062 2 565.743531 1129.47251 NaN NaN NaN NaN NaN NaN NaN 16.861 1 20.383 19.883 20.883 3.5217 0 0 0 0.40738 1 889 889 0.79363 0.10326 1 + 53160 29732 33094 33111 61308 61308 -0.08704917226350517 VYNKERWD 8 Unmodified _VYNKERWD_ 0 0 0 REV__MER41-int_dup544|chr6:15560382-15561652:+|1.1323013278731942|0.1788576253389306|2.66|150.0|18|2|sense REV__MER41-int_dup544|chr6:15560382-15561652:+|1.1323013278731942|0.1788576253389306|2.66|150.0|18|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 555.29931640625 2 555.272355 1108.53016 0.38918 0.0002161 0.40413 0.0002244 0.7933 0.0004405 555.2708275968785 71.831 0.085068 75.206 75.15 75.235 3.3751 8 5 2 0 0 0 0.72333 1 17534 17534 2.8892 0 1 30455 + 53161 31298 33095 33112 61309 61309 -0.019766157048934474 VYNKKVKS 8 Unmodified _VYNKKVKS_ 0 0 0 L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|44|3|sense L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|44|3|sense L1M4_dup9631|chr9:33884589-33885838:-|1.6656123076376417|0.0468693093721488|5.15|151.0|44|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 483.2927551269531 2 483.292559 964.570566 0.19269 9.3124E-05 -0.22755 -0.00010997 -0.034865 -1.685E-05 483.29236912044036 58.199 0.32021 58.199 58.025 58.345 0 53 35 2 0 0 0 0.72333 1 12832 12832 2.3027 0 1 282820 53162 8928 33096 33113 61310 61310 0.08686350685513844 VYNLISLNI 9 Unmodified _VYNLISLNI_ 0 0 0 REV__L1MC3_dup2452|chr3:138809636-138810636:+|1.5255157768841645|0.0047494138224106|8.33|151.0|62|2|anti-sense REV__L1MC3_dup2452|chr3:138809636-138810636:+|1.5255157768841645|0.0047494138224106|8.33|151.0|62|2|anti-sense MSMS UPN48_class_I_Rep_1 5 524.8054809570312 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.496 1 62.976 62.476 63.476 3.4801 0 0 0 0.25702 1 13078 13078 13.042 0 1 + 53163 26729 33097 33114 61311 61311 0.07455200137110296 VYNLISLNI 9 Unmodified _VYNLISLNI_ 0 0 0 REV__L1MC3_dup2452|chr3:138809636-138810636:+|1.5255157768841645|0.0047494138224106|8.33|151.0|62|2|anti-sense REV__L1MC3_dup2452|chr3:138809636-138810636:+|1.5255157768841645|0.0047494138224106|8.33|151.0|62|2|anti-sense MSMS UPN48_class_I_Rep_2 6 524.8049926757812 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.238 1 62.725 62.225 63.225 3.4868 0 0 0 0.31276 1 12976 12976 10.074 0 1 + 53164 26729 33097 33114 61312 61312 0.07455200137110296 VYNNCCYYC 9 Unmodified _VYNNCCYYC_ 0 0 0 REV__ENSG00000163820|ENST00000296137|FYCO1 REV__ENSG00000163820|ENST00000296137|FYCO1 MSMS UPN48_class_I_Rep_3 7 572.6963500976562 2 572.698463 1143.38237 NaN NaN NaN NaN NaN NaN NaN 40.568 1 44.219 43.719 44.719 3.6509 0 0 0 0.40038 1 7230 7230 0.6015 0.076735 1 + 53165 20009 33098 33115 61313 61313 -0.18358334617073524 VYNPVIYVF 9 Unmodified _VYNPVIYVF_ 0 0 0 ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3 ENST00000462265.5_1_1:241755332-241761290:-|nuORF ENST00000462265.5_1_1:241755332-241761290:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 557.3026733398438 2 557.302593 1112.59063 0.48527 0.00027044 -0.078053 -4.3499E-05 0.40721 0.00022694 557.302400100536 85.54 0.75552 89.146 88.825 89.581 3.6059 178 79 3 0 0 0 0.0088319 6 20462 20390;20427;20462;20495;20527;20562 70.716 41.634 1 450690 53166 933 33099 33116 61314;61315;61316;61317;61318;61319 61316 0.03884101625453695 VYNPVIYVF 9 Unmodified _VYNPVIYVF_ 0 0 0 ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3 ENST00000462265.5_1_1:241755332-241761290:-|nuORF ENST00000462265.5_1_1:241755332-241761290:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 557.3026733398438 2 557.302593 1112.59063 0.49571 0.00027626 -0.20304 -0.00011315 0.29267 0.0001631 557.3023824829542 85.429 0.72757 89.135 88.882 89.609 3.7058 163 85 2 0 0 0 0.0055873 5 20322 20261;20292;20322;20355;20391 81.864 45.737 1 518700 53167 933 33099 33116 61320;61321;61322;61323;61324 61322 0.03884101625453695 VYNPVIYVF 9 Unmodified _VYNPVIYVF_ 0 0 0 ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3 ENST00000462265.5_1_1:241755332-241761290:-|nuORF ENST00000462265.5_1_1:241755332-241761290:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 557.3028564453125 2 557.302593 1112.59063 0.43012 0.00023971 -0.085673 -4.7746E-05 0.34445 0.00019196 557.3024004994069 85.409 0.74364 89.159 88.892 89.636 3.7494 181 91 3 0 0 0 0.0088319 6 20259 20202;20228;20259;20289;20326;20360 70.716 41.634 1 494170 53168 933 33099 33116 61325;61326;61327;61328;61329;61330 61327 0.03884101625453695 VYNSVVFSIF 10 Unmodified _VYNSVVFSIF_ 0 0 0 L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense;L1MB7_dup19807|chr17:30821381-30821925:+|2.1218421038815265|0.0264638314504506|6.33|151.0|42|3|anti-sense;L1MB7_dup10269|chr8:123028306-123028632:+|1.1638978305888732|0.0091650007162631|6.99|151.0|16|1|anti-sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.8110961914062 2 587.810782 1173.60701 0.45016 0.00026461 0.12835 7.5446E-05 0.57851 0.00034005 587.8107909917792 72.805 0.4408 76.278 76.105 76.545 3.4732 62 32 3 0 0 0 0.31818 1 17083 17083 27.629 3.6082 1 166970 53169 10666 33100 33117 61331 61331 0.027151827915531612 VYNSVVFSIF 10 Unmodified _VYNSVVFSIF_ 0 0 0 L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense;L1MB7_dup19807|chr17:30821381-30821925:+|2.1218421038815265|0.0264638314504506|6.33|151.0|42|3|anti-sense;L1MB7_dup10269|chr8:123028306-123028632:+|1.1638978305888732|0.0091650007162631|6.99|151.0|16|1|anti-sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_2 6 587.8107299804688 2 587.810782 1173.60701 NaN NaN NaN NaN NaN NaN NaN 72.826 1 76.39 75.89 76.89 3.5645 0 0 0 0.53105 1 17069 17069 21.537 3.3906 1 53170 10666 33100 33117 61332 61332 0.027151827915531612 VYNSVVFSIF 10 Unmodified _VYNSVVFSIF_ 0 0 0 L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense;L1MB7_dup19807|chr17:30821381-30821925:+|2.1218421038815265|0.0264638314504506|6.33|151.0|42|3|anti-sense;L1MB7_dup10269|chr8:123028306-123028632:+|1.1638978305888732|0.0091650007162631|6.99|151.0|16|1|anti-sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense L1MB8_dup1401|chr2:48475935-48477116:-|1.8838971126124104|0.1620820321551909|3.54|151.0|76|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 587.8087158203125 2 587.810782 1173.60701 0.55861 0.00032836 -0.01898 -1.1157E-05 0.53963 0.0003172 587.810566144996 72.666 0.36286 76.203 76.17 76.533 3.5373 42 28 2 0 0 0 0.31818 3 16983 16983;16995;17030 27.629 4.8925 1 219910 53171 10666 33100 33117 61333;61334;61335 61333 0.027151827915531612 VYNVVERNL 9 Unmodified _VYNVVERNL_ 0 0 0 REV__ENSG00000178966|ENST00000445877|RMI1 REV__ENSG00000178966|ENST00000445877|RMI1 MULTI-MSMS UPN47_class_I_Rep_3 4 553.3034057617188 2 553.303655 1104.59276 0.3356 0.00018569 -0.94713 -0.00052405 -0.61153 -0.00033836 553.3032832087447 58.34 0.58672 61.506 61.267 61.854 3.1658 56 38 2 0 0 0 0.31407 1 13607 13607 13.042 0 1 145730 + 53172 20664 33101 33118 61336 61336 0.04464530363270569 VYNYVTNL 8 Unmodified _VYNYVTNL_ 0 0 0 L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|52|3|sense;L1PA7_dup12887|chr21:38464574-38464986:-|1.479793032327678|0.0177966087526501|6.38|148.0|8|2|sense;L1PA7_dup1017|chr2:31899021-31900694:+|2.740832612037551|0.0282235007765954|6.6|151.0|55|3|sense;L1PA7_dup8184|chrX:79277352-79280383:+|1.536225402013728|0.055733210286523|4.78|151.0|65|2|sense L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|52|3|sense L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|52|3|sense MSMS UPN48_class_I_Rep_2 6 493.2533264160156 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 71.586 1 75.137 74.637 75.637 3.5505 0 0 0 0.40643 1 16713 16713 2.0598 0 1 53173 14694 33102 33119 61337 61337 -0.0012192133945063688 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2 nc|ENSG00000130717|Q9HA47-3|UCK1 nc|ENSG00000130717|Q9HA47-3|UCK1 MULTI-MSMS UPN48_class_I_Rep_2 6 511.7811584472656 2 511.781493 1021.54843 0.31969 0.00016361 -0.27898 -0.00014278 0.040709 2.0834E-05 511.78121603826116 82.403 0.38868 86.072 85.912 86.301 3.669 84 47 2 0 0 0 0.09884 3 19579 19547;19579;19613 34.102 17.16 1 142630 53174 2671 33103 33120 61338;61339;61340 61339 0.038521262170888804 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2 nc|ENSG00000130717|Q9HA47-3|UCK1 nc|ENSG00000130717|Q9HA47-3|UCK1 MSMS UPN48_class_I_Rep_3 7 511.78143310546875 2 511.781493 1021.54843 NaN NaN NaN NaN NaN NaN NaN 82.255 1 85.94 85.44 86.44 3.685 0 0 0 0.052575 1 19491 19491 36.044 11.834 1 53175 2671 33103 33120 61341 61341 0.038521262170888804 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2 nc|ENSG00000130717|Q9HA47-3|UCK1 nc|ENSG00000130717|Q9HA47-3|UCK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 511.781493 1021.54843 0.25358 0.00012978 0.060574 3.1001E-05 0.31416 0.00016078 511.78148242409014 82.393 0.14954 85.968 85.918 86.068 3.5753 -0.12623 0.00028988 NaN 34.102 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 68044 53176 2671 33103 33120 0.038521262170888804 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2 nc|ENSG00000130717|Q9HA47-3|UCK1 nc|ENSG00000130717|Q9HA47-3|UCK1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 511.781493 1021.54843 0.33037 0.00016908 -0.25557 -0.0001308 0.074802 3.8282E-05 511.78117738515857 82.537 0.14164 86.243 86.137 86.279 3.7066 0.14893 -3.371E-05 NaN 34.102 29 18 2 NaN NaN NaN NaN 0 NaN NaN 0 72607 53177 2671 33103 33120 0.038521262170888804 VYPARRRK 8 Unmodified _VYPARRRK_ 0 0 0 L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense MSMS UPN46_class_I_Rep_3 1 523.3036499023438 2 523.322517 1044.63048 NaN NaN NaN NaN NaN NaN NaN 82.258 1 82.258 81.758 82.758 0 0 0 0 0.4044 1 19476 19476 4.756 0 1 53178 10944 33104 33121 61342 61342 0.1099508613940543 VYPARRRK 8 Unmodified _VYPARRRK_ 0 0 0 L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense L1MB8_dup13626|chr16:3546994-3547566:+|2.556371324562989|0.1653062637989651|3.95|151.0|5|2|sense MSMS UPN48_class_I_Rep_1 5 523.3212280273438 2 523.322517 1044.63048 NaN NaN NaN NaN NaN NaN NaN 79.874 1 83.423 82.923 83.923 3.5487 0 0 0 0.4044 1 19080 19080 4.756 0.81161 1 53179 10944 33104 33121 61343 61343 0.1099508613940543 VYPEESLVI 9 Unmodified _VYPEESLVI_ 0 0 0 ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 MULTI-MSMS UPN48_class_I_Rep_1 5 524.78173828125 2 524.78169 1047.54883 0.34194 0.00017944 0.11997 6.2959E-05 0.46191 0.0002424 524.7816660751286 68.577 0.507 72.029 71.746 72.253 3.4517 61 42 2 0 0 0 0.10817 3 15846 15798;15846;15862 32.305 11.852 1 164120 53180 5303 33105 33122 61344;61345;61346 61345 0.026955011462860057 VYPEESLVI 9 Unmodified _VYPEESLVI_ 0 0 0 ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 MULTI-MSMS UPN48_class_I_Rep_2 6 524.7820434570312 2 524.78169 1047.54883 0.39899 0.00020938 -0.08854 -4.6464E-05 0.31045 0.00016292 524.7815738043652 68.335 0.50792 71.844 71.634 72.142 3.5083 69 49 3 0 0 0 0.15122 3 15746 15746;15788;15793 25.399 4.9457 1 130270 53181 5303 33105 33122 61347;61348;61349 61347 0.026955011462860057 VYPEESLVI 9 Unmodified _VYPEESLVI_ 0 0 0 ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 MULTI-MSMS UPN48_class_I_Rep_3 7 524.781494140625 2 524.78169 1047.54883 0.49521 0.00025988 -0.37403 -0.00019628 0.12118 6.3595E-05 524.781480660258 68.326 0.4262 71.836 71.569 71.995 3.5093 71 41 2 0 0 0 0.10817 3 15654 15617;15654;15679 32.305 6.9062 1 182050 53182 5303 33105 33122 61350;61351;61352 61351 0.026955011462860057 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 506.77703857421875 2 506.778754 1011.54295 0.21451 0.00010871 -1.0612 -0.00053782 -0.84673 -0.00042911 506.77796017559837 92.484 0.15179 96.108 95.991 96.143 3.624 36 20 3 0 0 0 0.032361 2 22220 22211;22220 56.048 0 1 212640 53183 3241 33106 33123 61353;61354 61354 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 506.77862548828125 2 506.778754 1011.54295 0.21398 0.00010844 -0.36302 -0.00018397 -0.14904 -7.553E-05 506.77854351952976 92.541 0.053986 96.165 96.143 96.197 3.624 13 7 2 0 0 0 0.013862 1 22240 22240 67.413 0 1 275160 53184 3241 33106 33123 61355 61355 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 506.77850341796875 2 506.778754 1011.54295 0.21412 0.00010851 -0.3294 -0.00016693 -0.11528 -5.842E-05 506.7784973771297 92.619 0.3028 96.243 96.15 96.452 3.624 68 42 3 0 0 0 0.0053953 2 22295 22267;22295 79.935 0 1 462480 53185 3241 33106 33123 61356;61357 61357 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 507.2806091308594 2 506.778754 1011.54295 0.21389 0.00010839 -0.24372 -0.00012351 -0.029836 -1.512E-05 506.7785536260028 93.056 0.16891 96.68 96.644 96.812 3.624 31 21 2 0 0 0 0.12962 1 22357 22357 28.173 0 1 66631 53186 3241 33106 33123 61358 61358 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MSMS UPN48_class_I_Rep_1 5 506.7789001464844 2 506.778754 1011.54295 NaN NaN NaN NaN NaN NaN NaN 92.912 1 96.536 96.036 97.036 3.624 0 0 0 0.029365 1 22326 22326 45.75 0 1 53187 3241 33106 33123 61359 61359 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MSMS UPN48_class_I_Rep_1 5 506.7786865234375 2 506.778754 1011.54295 NaN NaN NaN NaN NaN NaN NaN 93.19 1 96.814 96.314 97.314 3.624 0 0 0 0.082921 1 22394 22394 28.173 0 1 53188 3241 33106 33123 61360 61360 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 506.7784118652344 2 506.778754 1011.54295 0.30916 0.00015668 -0.2852 -0.00014453 0.023966 1.2145E-05 506.77852716630423 92.588 0.1181 96.351 96.292 96.41 3.7629 21 16 2 0 0 0 0.057547 1 22025 22025 45.75 0 1 69606 53189 3241 33106 33123 61361 61361 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MSMS UPN48_class_I_Rep_2 6 506.7779541015625 2 506.778754 1011.54295 NaN NaN NaN NaN NaN NaN NaN 92.259 1 96.022 95.522 96.522 3.7629 0 0 0 0.029365 1 21961 21961 45.75 0 1 53190 3241 33106 33123 61362 61362 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MSMS UPN48_class_I_Rep_2 6 506.7782287597656 2 506.778754 1011.54295 NaN NaN NaN NaN NaN NaN NaN 92.404 1 96.167 95.667 96.667 3.7629 0 0 0 0.011822 1 21990 21990 56.048 0 1 53191 3241 33106 33123 61363 61363 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MSMS UPN48_class_I_Rep_2 6 506.7779235839844 2 506.778754 1011.54295 NaN NaN NaN NaN NaN NaN NaN 92.708 1 96.471 95.971 96.971 3.7629 0 0 0 0.082921 1 22058 22058 28.173 0 1 53192 3241 33106 33123 61364 61364 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 506.77880859375 2 506.778754 1011.54295 0.27943 0.00014161 -0.41027 -0.00020792 -0.13084 -6.6305E-05 506.77847478812424 92.526 0.13624 96.404 96.306 96.442 3.8782 32 17 2 0 0 0 0.088845 1 21924 21924 36.466 0 1 170840 53193 3241 33106 33123 61365 61365 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MSMS UPN48_class_I_Rep_3 7 506.7783508300781 2 506.778754 1011.54295 NaN NaN NaN NaN NaN NaN NaN 92.307 1 96.185 95.685 96.685 3.8782 0 0 0 0.029365 1 21888 21888 45.75 0 1 53194 3241 33106 33123 61366 61366 0.037644474252715554 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 506.778754 1011.54295 0.30902 0.00015661 -0.3908 -0.00019805 -0.08178 -4.1444E-05 506.7784769744833 92.512 0.097244 96.275 96.195 96.292 3.7629 -0.032299 -3.7181E-05 NaN 79.935 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 111190 53195 3241 33106 33123 0.037644474252715554 VYPLMKEYF 9 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ VYPLM(1)KEYF VYPLM(40)KEYF 0 0 1 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN48_class_I_Rep_1 5 603.2993774414062 2 603.299193 1204.58383 0.47884 0.00028888 0.55485 0.00033474 1.0337 0.00062363 603.2994546983149 55.517 1.144 59.025 58.41 59.554 3.5082 202 74 3 0 0 0 0.073198 1 11834 11834 40.239 14.84 1 769750 53196 1475 33107 33124 61367 61367 42 -0.010275793174287173 VYPLMKEYF 9 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ VYPLM(1)KEYF VYPLM(48)KEYF 0 0 1 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN48_class_I_Rep_2 6 603.2996215820312 2 603.299193 1204.58383 0.61038 0.00036824 0.33033 0.00019929 0.94071 0.00056753 603.2993278242785 55.434 1.227 58.989 58.396 59.623 3.5559 221 76 4 0 0 0 0.053261 2 11768 11768;11811 47.594 22.195 1 815330 53197 1475 33107 33124 61368;61369 61368 42 -0.010275793174287173 VYPLMKEYF 9 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ VYPLM(1)KEYF VYPLM(56)KEYF 0 0 1 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN48_class_I_Rep_3 7 603.2998657226562 2 603.299193 1204.58383 0.42293 0.00025516 0.58225 0.00035127 1.0052 0.00060643 603.2994923515665 55.389 1.169 58.945 58.371 59.54 3.5554 209 73 4 0 0 0 0.033731 2 11712 11712;11752 55.503 23.197 1 1056500 53198 1475 33107 33124 61370;61371 61370 42 -0.010275793174287173 VYPLMKEYF 9 Unmodified _VYPLMKEYF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN48_class_I_Rep_1 5 595.3021850585938 2 595.301736 1188.58892 0.50961 0.00030337 -0.040531 -2.4128E-05 0.46908 0.00027925 595.3015414539761 65.644 0.79338 69.096 68.637 69.431 3.4516 88 55 2 0 0 0 0.32682 2 14917 14917;14972 12.241 2.1667 1 223450 53199 1475 33107 33125 61372;61373 61372 0.0021672454518011364 VYPLMKEYF 9 Unmodified _VYPLMKEYF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS UPN48_class_I_Rep_2 6 595.3016967773438 2 595.301736 1188.58892 0.513 0.00030539 -0.14541 -8.6565E-05 0.36758 0.00021882 595.3015365994995 65.48 0.77036 68.959 68.526 69.296 3.4792 93 54 2 0 0 0 0.24936 1 14864 14864 17.113 6.289 1 291630 53200 1475 33107 33125 61374 61374 0.0021672454518011364 VYPLYTIVF 9 Unmodified _VYPLYTIVF_ 0 0 0 nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-2|JKAMP MSMS UPN48_class_I_Rep_1 5 557.812744140625 2 557.812793 1113.61103 NaN NaN NaN NaN NaN NaN NaN 93.53 1 97.15 96.65 97.65 3.6208 0 0 0 0.059724 1 22480 22480 34.102 10.954 1 53201 909 33108 33126 61375 61375 0.05877272285283652 VYPPFFIHL 9 Unmodified _VYPPFFIHL_ 0 0 0 REV__MLT1C_dup2913|chr3:11573763-11574196:+|1.423788419616889|0.3699148424160889|1.94|151.0|25|2|anti-sense REV__MLT1C_dup2913|chr3:11573763-11574196:+|1.423788419616889|0.3699148424160889|1.94|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_2 6 566.8114624023438 2 566.813128 1131.6117 NaN NaN NaN NaN NaN NaN NaN 72.847 1 76.411 75.911 76.911 3.5645 0 0 0 0.381 1 17075 17075 5.2307 2.6532 1 + 53202 31648 33109 33127 61376 61376 0.05116111724987604 VYPQQKLL 8 Unmodified _VYPQQKLL_ 0 0 0 L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|24|2|sense L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|24|2|sense L1MC5_dup10599|chr12:28426104-28427818:-|1.1694993928611372|0.0155270574153154|6.23|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 495.2956237792969 2 494.794935 987.575317 -0.30864 -0.00015271 0.18288 9.0491E-05 -0.12576 -6.2224E-05 494.7949820056736 36.881 1.3564 40.128 39.594 40.951 3.247 212 95 3 0 0 0 0.82752 1 7214 7214 2.3027 0 1 289630 53203 11654 33110 33128 61377 61377 0.08103234828286077 VYPRDYSM 8 Unmodified _VYPRDYSM_ 0 0 0 L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|293|3|anti-sense L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|293|3|anti-sense L1MB8_dup10310|chr10:76470966-76475357:+|6.117381439581333|0.0261935746359591|7.87|151.0|293|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 516.236328125 2 515.73676 1029.45897 -0.34813 -0.00017954 -0.14941 -7.7054E-05 -0.49754 -0.0002566 516.2373282113169 29.919 0.19996 33.242 33.144 33.344 3.3235 20 16 2 0 0 0 0.82752 1 4884 4884 0.69038 0 1 41587 53204 10894 33111 33129 61378 61378 -0.05458451733943548 VYPVCETVF 9 Unmodified _VYPVCETVF_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense MSMS UPN48_class_I_Rep_1 5 528.7550048828125 2 528.757161 1055.49977 NaN NaN NaN NaN NaN NaN NaN 60.353 1 63.827 63.327 64.327 3.4737 0 0 0 0.38299 1 13342 13342 4.756 0 1 53205 15487 33112 33130 61379 61379 -0.025761104143157354 VYPVCETVF 9 Unmodified _VYPVCETVF_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense MSMS UPN48_class_I_Rep_1 5 528.7672119140625 2 528.757161 1055.49977 NaN NaN NaN NaN NaN NaN NaN 60.543 1 64.016 63.516 64.516 3.4737 0 0 0 0.1074 1 13401 13401 23.148 6.0355 1 53206 15487 33112 33130 61380 61380 -0.025761104143157354 VYPVCETVF 9 Unmodified _VYPVCETVF_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense MSMS UPN48_class_I_Rep_1 5 528.7552490234375 2 528.757161 1055.49977 NaN NaN NaN NaN NaN NaN NaN 60.717 1 64.191 63.691 64.691 3.4737 0 0 0 0.19137 1 13455 13455 16.942 1.0951 1 53207 15487 33112 33130 61381 61381 -0.025761104143157354 VYPVCETVF 9 Unmodified _VYPVCETVF_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense MSMS UPN48_class_I_Rep_3 7 528.7550659179688 2 528.757161 1055.49977 NaN NaN NaN NaN NaN NaN NaN 60.202 1 63.718 63.218 64.218 3.5169 0 0 0 0.36505 1 13205 13205 7.2892 0.93513 1 53208 15487 33112 33130 61382 61382 -0.025761104143157354 VYPVCETVF 9 Unmodified _VYPVCETVF_ 0 0 0 Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|27|3|sense MSMS UPN48_class_I_Rep_3 7 528.7550048828125 2 528.757161 1055.49977 NaN NaN NaN NaN NaN NaN NaN 60.584 1 64.097 63.597 64.597 3.5128 0 0 0 0.19137 1 13323 13323 16.942 4.4107 1 53209 15487 33112 33130 61383 61383 -0.025761104143157354 VYPVDVLNR 9 Unmodified _VYPVDVLNR_ 0 0 0 REV__L1MC_dup3266|chr7:37086925-37087636:-|1.7278373514929335|0.018621076303561|6.54|151.0|17|2|sense REV__L1MC_dup3266|chr7:37086925-37087636:-|1.7278373514929335|0.018621076303561|6.54|151.0|17|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 537.7994995117188 2 537.800749 1073.58694 0.29147 0.00015675 -3.42 -0.0018393 -3.1286 -0.0016825 537.7994691379185 51.716 0.055862 51.716 51.683 51.739 0 8 5 2 0 0 0 0.44858 1 11013 11013 5.2307 0.90143 1 107190 + 53210 26463 33113 33131 61384 61384 0.0530943185160595 VYPWCAHSFF 10 Unmodified _VYPWCAHSFF_ 0 0 0 REV__L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|74|2|anti-sense REV__L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 628.7810668945312 2 628.781502 1255.54845 0.35625 0.000224 -1.1705 -0.00073599 -0.81425 -0.00051198 628.7806746110839 48.311 0.77965 51.66 51.28 52.06 3.3492 79 39 3 0 0 0 0.46161 4 10433 10341;10346;10433;10524 14.838 3.0821 1 171540 + 53211 30733 33114 33132 61385;61386;61387;61388 61387 -0.06910197054571654 VYPWCAHSFF 10 Unmodified _VYPWCAHSFF_ 0 0 0 REV__L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|74|2|anti-sense REV__L1PREC2_dup579|chr2:24687848-24689406:-|1.4599685894014998|0.0390328688715866|5.23|151.0|74|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 628.78076171875 2 628.781502 1255.54845 0.40721 0.00025605 -1.2684 -0.00079753 -0.86117 -0.00054149 628.7806440261076 48.4 0.74554 51.636 51.301 52.046 3.236 61 37 2 0 0 0 0.51565 1 10438 10438 10.074 2.1638 1 170050 + 53212 30733 33114 33132 61389 61389 -0.06910197054571654 VYQFKPLHK 9 Unmodified _VYQFKPLHK_ 0 0 0 REV__L1M5_dup892|chr1:50825278-50826269:+|1.1726234709628265|0.0037412720563468|8.29|151.0|15|2|sense REV__L1M5_dup892|chr1:50825278-50826269:+|1.1726234709628265|0.0037412720563468|8.29|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.8360595703125 2 580.334759 1158.65496 0.55825 0.00032397 -0.18155 -0.00010536 0.3767 0.00021861 580.334545704312 59.789 1.0535 63.269 62.841 63.894 3.4801 245 77 4 0 0 0 0.46869 1 13059 13059 3.9444 0 1 1664000 + 53213 24711 33115 33133 61390 61390 0.08198301502261529 VYQFKPLHK 9 Unmodified _VYQFKPLHK_ 0 0 0 REV__L1M5_dup892|chr1:50825278-50826269:+|1.1726234709628265|0.0037412720563468|8.29|151.0|15|2|sense REV__L1M5_dup892|chr1:50825278-50826269:+|1.1726234709628265|0.0037412720563468|8.29|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.3365478515625 2 580.334759 1158.65496 0.55671 0.00032308 -0.12898 -7.4853E-05 0.42773 0.00024823 580.3345895145075 59.747 1.0155 63.234 62.805 63.821 3.4868 247 80 4 0 0 0 0.41259 3 13019 13019;13250;13292 7.2892 6.7232 1 1630800 + 53214 24711 33115 33133 61391;61392;61393 61391 0.08198301502261529 VYQFKPLHK 9 Unmodified _VYQFKPLHK_ 0 0 0 REV__L1M5_dup892|chr1:50825278-50826269:+|1.1726234709628265|0.0037412720563468|8.29|151.0|15|2|sense REV__L1M5_dup892|chr1:50825278-50826269:+|1.1726234709628265|0.0037412720563468|8.29|151.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.3345336914062 2 580.334759 1158.65496 0.46083 0.00026744 -0.10074 -5.846E-05 0.3601 0.00020898 580.3346112191005 59.573 1.0526 63.09 62.698 63.751 3.5169 218 82 3 0 0 0 0.42249 1 13160 13160 6.7232 2.7788 1 1537100 + 53215 24711 33115 33133 61394 61394 0.08198301502261529 VYQGKLNQL 9 Unmodified _VYQGKLNQL_ 0 0 0 REV__ENSG00000196943|ENST00000267425|NOP9 REV__ENSG00000196943|ENST00000267425|NOP9 MULTI-MSMS UPN48_class_I_Rep_1 5 531.8013305664062 2 531.800749 1061.58694 0.45727 0.00024318 -0.61258 -0.00032577 -0.15531 -8.2594E-05 531.8005995172512 58.83 0.91561 62.317 61.863 62.778 3.487 156 58 4 0 0 0 0.18929 1 12782 12782 21.747 2.3847 1 964770 + 53216 21059 33116 33134 61395 61395 0.058614318515992636 VYQGKLNQL 9 Unmodified _VYQGKLNQL_ 0 0 0 REV__ENSG00000196943|ENST00000267425|NOP9 REV__ENSG00000196943|ENST00000267425|NOP9 MULTI-MSMS UPN48_class_I_Rep_3 7 531.801025390625 2 531.800749 1061.58694 0.46073 0.00024502 -0.48906 -0.00026008 -0.028335 -1.5069E-05 531.8006584486188 58.568 0.98416 62.091 61.688 62.672 3.5231 168 66 4 0 0 0 0.18929 1 12636 12636 21.747 2.4897 1 1272000 + 53217 21059 33116 33134 61396 61396 0.058614318515992636 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS UPN48_class_I_Rep_1 5 588.830322265625 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 46.556 1 50.075 49.575 50.575 3.5192 0 0 0 0.38394 1 9103 9103 4.5289 0 1 53218 5716 33117 33135 61397 61397 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS UPN48_class_I_Rep_2 6 588.8295288085938 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 46.176 1 49.934 49.434 50.434 3.7579 0 0 0 0.34878 1 8994 8994 8.1555 2.9249 1 53219 5716 33117 33135 61398 61398 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS UPN48_class_I_Rep_2 6 588.8292236328125 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 46.339 1 50.089 49.589 50.589 3.7494 0 0 0 0.36857 1 9044 9044 7.1017 0.37856 1 53220 5716 33117 33135 61399 61399 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS UPN48_class_I_Rep_3 7 588.8305053710938 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 46.256 1 49.893 49.393 50.393 3.6369 0 0 0 0.31132 1 8949 8949 10.151 3.4274 1 53221 5716 33117 33135 61400 61400 0.0643311349688247 VYQIRRRFG 9 Unmodified _VYQIRRRFG_ 0 0 0 L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|219|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|219|1|anti-sense L1PA2_dup3771|chr11:93172448-93178521:-|5.286728160741125|0.2657970141011875|4.31|151.0|219|1|anti-sense MSMS UPN48_class_I_Rep_1 5 597.84521484375 2 597.846356 1193.67816 NaN NaN NaN NaN NaN NaN NaN 41.783 1 45.291 44.791 45.791 3.5079 0 0 0 0.39326 1 7655 7655 2.3027 0.4585 1 53222 14197 33118 33136 61401 61401 0.08906740339602948 VYQLDKLAN 9 Unmodified _VYQLDKLAN_ 0 0 0 REV__ENSG00000023516|ENST00000025301|AKAP11 REV__ENSG00000023516|ENST00000025301|AKAP11 MULTI-SECPEP UPN48_class_I_Rep_2 6 531.8011474609375 2 532.292756 1062.57096 0.52742 0.00028074 -3.4011 -0.0018104 -2.8736 -0.0015296 532.7909473337847 58.219 0.37505 61.717 61.577 61.952 3.4987 37 22 3 0 0 0 0.12034 1 12732 12732 7.2892 2.0586 1 90825 + 53223 17614 33119 33137 61402 61402 0.042177256146942455 VYQLDKLAN 9 Unmodified _VYQLDKLAN_ 0 0 0 REV__ENSG00000023516|ENST00000025301|AKAP11 REV__ENSG00000023516|ENST00000025301|AKAP11 MULTI-MATCH UPN48_class_I_Rep_3 7 2 532.292756 1062.57096 0.45337 0.00024133 -3.2411 -0.0017252 -2.7877 -0.0014839 532.7911203973788 58.07 0.1928 61.602 61.466 61.659 3.5317 -0.057923 0.00012286 NaN 7.2892 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 126310 + 53224 17614 33119 33137 0.042177256146942455 VYQLRFQFL 9 Unmodified _VYQLRFQFL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS UPN48_class_I_Rep_3 7 607.33984375 2 607.340041 1212.66553 0.59983 0.0003643 0.30215 0.00018351 0.90198 0.00054781 607.3400957702393 75.57 0.33118 79.136 78.897 79.228 3.5659 58 35 2 0 0 0 0.10225 2 17783 17732;17783 36.127 26.053 1 171100 53225 1052 33120 33138 61403;61404 61404 0.06770284156687012 VYQTVWWF 8 Unmodified _VYQTVWWF_ 0 0 0 L1MB3_dup10434|chr10:87907593-87908435:-|2.1745359534838924|0.0305977086596901|6.15|150.0|16|2|sense L1MB3_dup10434|chr10:87907593-87908435:-|2.1745359534838924|0.0305977086596901|6.15|150.0|16|2|sense L1MB3_dup10434|chr10:87907593-87908435:-|2.1745359534838924|0.0305977086596901|6.15|150.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 564.7769775390625 2 564.779285 1127.54402 NaN NaN NaN NaN NaN NaN NaN 35.929 1 35.929 35.429 36.429 0 0 0 0 0.40738 1 6600 6600 0.79363 0 1 53226 10313 33121 33139 61405 61405 -0.014653382058440911 VYQWNIIQ 8 Unmodified _VYQWNIIQ_ 0 0 0 L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 532.28271484375 2 532.282192 1062.54983 0.45977 0.00024473 -0.0055219 -2.9392E-06 0.45425 0.00024179 532.2821767916843 58.795 1.0516 62.282 61.844 62.896 3.487 187 66 4 0 0 0 0.82752 5 12773 12773;12813;12860;12899;12939 32.117 13.982 1 1019900 53227 11106 33122 33140 61406;61407;61408;61409;61410 61406 0.021057603058579843 VYQWNIIQ 8 Unmodified _VYQWNIIQ_ 0 0 0 L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.2821044921875 2 532.282192 1062.54983 0.52014 0.00027686 -0.090424 -4.8131E-05 0.42972 0.00022873 532.2821050905047 58.724 1.1061 62.223 61.805 62.912 3.4987 179 68 4 0 0 0 0.82752 5 12745 12745;12792;12837;12882;12928 32.117 12.755 1 1120800 53228 11106 33122 33140 61411;61412;61413;61414;61415 61411 0.021057603058579843 VYQWNIIQ 8 Unmodified _VYQWNIIQ_ 0 0 0 L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense L1MC1_dup11772|chr17:44486880-44487589:-|1.0720186123871482|0.1176079910069617|3.19|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.2821044921875 2 532.282192 1062.54983 0.4661 0.0002481 0.029425 1.5662E-05 0.49552 0.00026376 532.2822003437182 58.624 1.0225 62.147 61.699 62.722 3.5231 179 68 3 0 0 0 0.82752 6 12843 12634;12682;12722;12761;12798;12843 38.151 17.698 1 1300400 53229 11106 33122 33140 61416;61417;61418;61419;61420;61421 61421 0.021057603058579843 VYRDNWLK 8 Unmodified _VYRDNWLK_ 0 0 0 REV__MLT1E_dup134|chr3:71151891-71152469:+|1.0613918632094734|0.0035278248591624|8.23|151.0|25|3|sense REV__MLT1E_dup134|chr3:71151891-71152469:+|1.0613918632094734|0.0035278248591624|8.23|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 547.2927856445312 2 547.293091 1092.57163 NaN NaN NaN NaN NaN NaN NaN 48.503 1 52.22 51.72 52.72 3.7175 0 0 0 0.40472 1 9698 9698 4.3292 0 1 + 53230 31690 33123 33141 61422 61422 0.02904565054404884 VYREFQLLH 9 Unmodified _VYREFQLLH_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 602.82763671875 2 602.827298 1203.64004 0.42657 0.00025715 -0.24449 -0.00014738 0.18208 0.00010976 602.8272504409459 55.655 0.43416 59.21 58.913 59.348 3.5554 46 27 3 0 0 0 0.28552 1 11849 11849 14.838 0.43289 1 324760 53231 12493 33124 33142 61423 61423 0.046368096342803256 VYREFQLLH 9 Unmodified _VYREFQLLH_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 602.827298 1203.64004 0.48661 0.00029334 -0.23846 -0.00014375 0.24815 0.00014959 602.8271297069447 55.813 0.57132 59.314 59.083 59.654 3.5014 0.025993 -2.5609E-06 NaN 14.838 57 40 2 NaN NaN NaN NaN 0 NaN NaN 0 188030 53232 12493 33124 33142 0.046368096342803256 VYREFQLLH 9 Unmodified _VYREFQLLH_ 0 0 0 L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense L1ME2_dup2243|chr2:233410710-233413095:-|2.7629013127879847|0.0269971975562521|6.68|151.0|129|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 602.827298 1203.64004 0.60735 0.00036613 -0.22999 -0.00013865 0.37736 0.00022748 602.8271219152726 55.784 0.83109 59.34 58.989 59.82 3.5559 0.051879 7.6459E-06 NaN 14.838 84 58 2 NaN NaN NaN NaN 0 NaN NaN 0 291830 53233 12493 33124 33142 0.046368096342803256 VYRHFGKA 8 Unmodified _VYRHFGKA_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000549533.1_1_19:49118631-49119324:-|nuORF;ENST00000552347.5_1_19:49118631-49119489:-|nuORF;ENST00000547892.1_1_19:49119132-49119324:-|nuORF;ENST00000551749.5_1_19:49119132-49119489:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MSMS UPN48_class_I_Rep_2 6 489.26904296875 2 489.269419 976.524284 NaN NaN NaN NaN NaN NaN NaN 37.009 1 40.711 40.211 41.211 3.7021 0 0 0 0.40364 1 6283 6283 5.7604 0 1 53234 981 33125 33143 61424 61424 0.03508330574084084 VYRHREVI 8 Unmodified _VYRHREVI_ 0 0 0 REV__L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|94|3|sense REV__L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|94|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 536.3068237304688 2 536.306532 1070.59851 0.3098 0.00016615 -0.71479 -0.00038334 -0.40499 -0.0002172 536.3062466575572 46.985 0.40521 46.985 46.752 47.157 0 53 39 2 0 0 0 0.72333 1 9721 9721 2.3027 0.24298 1 293820 + 53235 24107 33126 33144 61425 61425 0.06603673665608767 VYRIGKGF 8 Unmodified _VYRIGKGF_ 0 0 0 REV__ENSG00000269190|ENST00000292852|FBXO17 REV__ENSG00000269190|ENST00000292852|FBXO17 MSMS UPN48_class_I_Rep_1 5 470.27484130859375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 53.913 1 57.427 56.927 57.927 3.5143 0 0 0 0.40581 1 11363 11363 2.8892 0 1 + 53236 21417 33127 33145 61426 61426 0.06206098859627218 VYRIGKGF 8 Unmodified _VYRIGKGF_ 0 0 0 REV__ENSG00000269190|ENST00000292852|FBXO17 REV__ENSG00000269190|ENST00000292852|FBXO17 MSMS UPN48_class_I_Rep_1 5 470.27484130859375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 54.265 1 57.78 57.28 58.28 3.5143 0 0 0 0.40581 1 11473 11473 2.8892 0 1 + 53237 21417 33127 33145 61427 61427 0.06206098859627218 VYRIGKGF 8 Unmodified _VYRIGKGF_ 0 0 0 REV__ENSG00000269190|ENST00000292852|FBXO17 REV__ENSG00000269190|ENST00000292852|FBXO17 MSMS UPN48_class_I_Rep_3 7 470.27484130859375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 53.734 1 57.318 56.818 57.818 3.5836 0 0 0 0.40581 1 11228 11228 2.8892 0 1 + 53238 21417 33127 33145 61428 61428 0.06206098859627218 VYRIGKGF 8 Unmodified _VYRIGKGF_ 0 0 0 REV__ENSG00000269190|ENST00000292852|FBXO17 REV__ENSG00000269190|ENST00000292852|FBXO17 MSMS UPN48_class_I_Rep_3 7 470.27508544921875 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 54.067 1 57.636 57.136 58.136 3.5694 0 0 0 0.40581 1 11330 11330 2.8892 0 1 + 53239 21417 33127 33145 61429 61429 0.06206098859627218 VYRKAINFI 9 Unmodified _VYRKAINFI_ 0 0 0 L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense;L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|73|1|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345336914062 2 562.334759 1122.65496 0.18588 0.00010453 0.049274 2.7709E-05 0.23516 0.00013224 562.3345962614843 30.078 0.15559 30.078 30.015 30.17 0 31 13 3 0 0 0 0.48846 1 4838 4838 1.8442 0.19162 1 395370 53240 11357 33128 33146 61430 61430 0.09854301502286944 VYRKAINFI 9 Unmodified _VYRKAINFI_ 0 0 0 L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense;L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|73|1|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.33447265625 2 562.334759 1122.65496 0.22897 0.00012876 0.096876 5.4477E-05 0.32585 0.00018324 562.3344749245125 32.046 0.069298 32.046 31.984 32.053 0 11 4 3 0 0 0 0.48846 1 5427 5427 1.8442 0 1 254080 53241 11357 33128 33146 61431 61431 0.09854301502286944 VYRKAINFI 9 Unmodified _VYRKAINFI_ 0 0 0 L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense;L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|73|1|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3345336914062 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 33.054 1 33.054 32.554 33.554 0 0 0 0 0.28335 1 5735 5735 11.64 3.7301 1 53242 11357 33128 33146 61432 61432 0.09854301502286944 VYRKAINFI 9 Unmodified _VYRKAINFI_ 0 0 0 L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense;L1MC3_dup5458|chr7:67213378-67215126:-|2.1830687987024247|0.0496437359633605|5.46|151.0|73|1|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense L1MD3_dup2082|chr7:72598925-72600669:+|1.3179888745002626|0.0116349499154535|6.82|151.0|113|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.3344116210938 2 562.334759 1122.65496 0.50411 0.00028348 0.24776 0.00013933 0.75187 0.0004228 562.3343932343262 109.44 0.66056 112.97 112.93 113.59 3.5347 201 94 3 0 0 0 0.46869 1 26987 26987 3.9444 0.3479 1 1926600 53243 11357 33128 33146 61433 61433 0.09854301502286944 VYRKRKFP 8 Unmodified _VYRKRKFP_ 0 0 0 REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron REV__ENSG00000187257.16,RSBN1L,chr7,+,I7.1,77768804,77773146|23|6.1|1|intron MSMS UPN47_class_I_Rep_3 4 547.3326416015625 2 547.335093 1092.65563 NaN NaN NaN NaN NaN NaN NaN 113.71 1 117.2 116.7 117.7 3.4963 0 0 0 0.40753 1 27899 27899 0.6015 0 1 + 53244 20926 33129 33147 61434 61434 0.11301140941986887 VYRNPESFKEK 11 Unmodified _VYRNPESFKEK_ 0 0 0 ENSG00000146066|ENST00000274787|HIGD2A ENSG00000146066|ENST00000274787|HIGD2A ENSG00000146066|ENST00000274787|HIGD2A MULTI-MSMS UPN46_class_I_Rep_3 1 466.24530029296875 3 466.245498 1395.71466 -0.1125 -5.2454E-05 -0.038522 -1.7961E-05 -0.15102 -7.0415E-05 466.2454828155681 26.348 0.93304 26.348 25.91 26.843 0 171 77 3 0 0 0 0.32774 1 3717 3717 26.121 18.275 1 121900 53245 3425 33130 33148 61435 61435 0.03263527655008147 VYRRAAAA 8 Unmodified _VYRRAAAA_ 0 0 0 L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 439.2532958984375 2 439.253769 876.492984 0.15763 6.9241E-05 -1.9465 -0.00085502 -1.7889 -0.00078578 439.2528721763684 85.668 0.17484 85.668 85.606 85.781 0 19 15 2 0 0 0 0.82752 1 20454 20454 0.79363 0 1 84230 53246 9163 33131 33149 61436 61436 0.04979757539979346 VYRRAAAA 8 Unmodified _VYRRAAAA_ 0 0 0 L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 439.253769 876.492984 0.15763 6.9241E-05 -1.9465 -0.00085502 -1.7889 -0.00078578 439.2528721763684 85.668 0.17484 85.668 85.606 85.781 0 0.0074794 5.9595E-05 NaN 0.79363 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 84230 53247 9163 33131 33149 0.04979757539979346 VYRRAAAA 8 Unmodified _VYRRAAAA_ 0 0 0 L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense L1M5_dup40902|chr13:21502435-21502722:-|1.3212991736303503|0.3056339563792175|2.11|151.0|24|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 439.253769 876.492984 -0.32703 -0.00014365 -2.4888 -0.0010932 -2.8159 -0.0012369 439.252259279207 82.316 0.0345 85.653 85.638 85.672 3.337 -0.0074794 -0.00041684 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 22303 53248 9163 33131 33149 0.04979757539979346 VYRVIRGWF 9 Unmodified _VYRVIRGWF_ 0 0 0 REV__HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|89|2|anti-sense REV__HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_1 5 598.3399658203125 2 598.340375 1194.6662 NaN NaN NaN NaN NaN NaN NaN 41.81 1 45.318 44.818 45.818 3.5079 0 0 0 0.39428 1 7663 7663 2.0598 0 1 + 53249 23464 33132 33150 61437 61437 0.07665123596393641 VYRVYVATF 9 Unmodified _VYRVYVATF_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MSMS UPN48_class_I_Rep_3 7 559.3053588867188 2 559.305667 1116.59678 NaN NaN NaN NaN NaN NaN NaN 57.402 1 60.933 60.433 61.433 3.5317 0 0 0 0.39518 1 12344 12344 1.8442 0 1 53250 5356 33133 33151 61438 61438 0.04314619856972968 VYRWLIIHR 9 Unmodified _VYRWLIIHR_ 0 0 0 MER4B-int_dup436|chr7:32520140-32520818:+|1.5855639745730807|0.0275289434039596|5.85|151.0|28|3|sense MER4B-int_dup436|chr7:32520140-32520818:+|1.5855639745730807|0.0275289434039596|5.85|151.0|28|3|sense MER4B-int_dup436|chr7:32520140-32520818:+|1.5855639745730807|0.0275289434039596|5.85|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 628.3748168945312 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 39.225 1 39.225 38.725 39.725 0 0 0 0 0.4007 1 7521 7521 0.52476 0.066424 1 53251 16023 33134 33152 61439 61439 0.11776787896133101 VYRYAFFY 8 Unmodified _VYRYAFFY_ 0 0 0 Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense Tigger2_dup1938|chr11:47790772-47791339:-|1.2342509023832755|0.28729618437035|2.1|151.0|34|3|anti-sense MSMS UPN48_class_I_Rep_2 6 565.25634765625 2 564.779285 1127.54402 NaN NaN NaN NaN NaN NaN NaN 113.89 1 117.55 117.05 118.05 3.663 0 0 0 0.40738 1 27196 27196 0.79363 0 1 53252 33292 33135 33153 61440 61440 -0.014653382058213538 VYRYINRDT 9 Unmodified _VYRYINRDT_ 0 0 0 REV__L1MC3_dup4424|chr5:180023043-180024464:+|2.389510571297442|0.0229332435664335|6.7|150.0|3|1|sense REV__L1MC3_dup4424|chr5:180023043-180024464:+|2.389510571297442|0.0229332435664335|6.7|150.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 600.31298828125 2 600.312012 1198.60947 NaN NaN NaN NaN NaN NaN NaN 71.502 1 74.721 74.221 75.221 3.2188 0 0 0 0.39428 1 17547 17547 2.0598 0 1 + 53253 26746 33136 33154 61441 61441 0.018110312492126468 VYRYLFESL 9 Unmodified _VYRYLFESL_ 0 0 0 L1MB3_dup2688|chr2:232817379-232818200:-|1.0979109594689225|0.0709489780541207|3.95|151.0|42|1|anti-sense L1MB3_dup2688|chr2:232817379-232818200:-|1.0979109594689225|0.0709489780541207|3.95|151.0|42|1|anti-sense L1MB3_dup2688|chr2:232817379-232818200:-|1.0979109594689225|0.0709489780541207|3.95|151.0|42|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 595.3170776367188 2 595.316232 1188.61791 0.51281 0.00030528 0.080644 4.8009E-05 0.59345 0.00035329 595.3163890112866 60.389 0.62803 63.906 63.548 64.176 3.5169 91 55 2 0 0 0 0.087255 1 13238 13238 24.021 1.2843 1 242630 53254 10406 33137 33155 61442 61442 0.031145851658493484 VYSDYLQTI 9 Unmodified _VYSDYLQTI_ 0 0 0 ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS UPN48_class_I_Rep_1 5 551.27685546875 2 551.276772 1100.53899 0.57645 0.00031778 -0.01861 -1.0259E-05 0.55784 0.00030752 551.2765109925726 65.976 0.44879 69.428 69.244 69.693 3.4516 52 30 2 0 0 0 0.097406 2 15042 15042;15090 34.402 17.459 1 119510 53255 4868 33138 33156 61443;61444 61443 -0.0072568685909573105 VYSDYLQTI 9 Unmodified _VYSDYLQTI_ 0 0 0 ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS UPN48_class_I_Rep_2 6 551.27734375 2 551.276772 1100.53899 0.51674 0.00028487 -0.033306 -1.8361E-05 0.48344 0.00026651 551.276731096315 65.916 0.37956 69.403 69.121 69.5 3.4866 41 24 2 0 0 0 0.11355 3 14996 14951;14996;15045 31.268 17.362 1 157750 53256 4868 33138 33156 61445;61446;61447 61446 -0.0072568685909573105 VYSDYLQTI 9 Unmodified _VYSDYLQTI_ 0 0 0 ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS UPN48_class_I_Rep_3 7 551.2761840820312 2 551.276772 1100.53899 0.44025 0.0002427 0.049486 2.728E-05 0.48974 0.00026998 551.2767551243192 65.845 0.47884 69.353 69.06 69.539 3.5077 59 30 3 0 0 0 0.088679 2 14871 14871;14917 36.506 20.357 1 153260 53257 4868 33138 33156 61448;61449 61448 -0.0072568685909573105 VYSEANLTFG 10 Unmodified _VYSEANLTFG_ 0 0 0 REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF MSMS UPN47_class_I_Rep_2 3 550.7786865234375 2 550.766571 1099.51859 NaN NaN NaN NaN NaN NaN NaN 51.437 1 54.776 54.276 55.276 3.3386 0 0 0 0.53105 1 11394 11394 3.9444 1.0552 1 + 53258 21208 33139 33157 61450 61450 -0.02718857518925688 VYSEVAAYEF 10 Unmodified _VYSEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 589.2744140625 2 589.274229 1176.53391 0.50961 0.0003003 0.1639 9.6582E-05 0.67351 0.00039688 589.2742079027971 65.345 0.80013 68.799 68.522 69.322 3.4541 153 56 4 0 0 0 0.13812 3 14889 14850;14889;14940 69.105 41.476 1 606870 53259 5117 33140 33158 61451;61452;61453 61452 -0.04729990721716604 VYSEVAAYEF 10 Unmodified _VYSEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 589.2739868164062 2 589.274229 1176.53391 0.51226 0.00030186 0.10028 5.9093E-05 0.61254 0.00036095 589.2741654544062 65.26 0.80585 68.739 68.401 69.207 3.4792 136 58 3 0 0 0 0.13812 3 14801 14801;14843;14892 69.105 34.703 1 571120 53260 5117 33140 33158 61454;61455;61456 61454 -0.04729990721716604 VYSEVAAYEF 10 Unmodified _VYSEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 589.2745971679688 2 589.274229 1176.53391 0.54361 0.00032034 0.11615 6.8444E-05 0.65976 0.00038878 589.2741487566943 65.167 0.79162 68.675 68.33 69.122 3.5077 150 54 4 0 0 0 0.19978 3 14722 14681;14722;14785 60.074 32.445 1 528050 53261 5117 33140 33158 61457;61458;61459 61458 -0.04729990721716604 VYSFGFERL 9 Unmodified _VYSFGFERL_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS UPN48_class_I_Rep_1 5 559.2879638671875 2 559.287474 1116.5604 0.57939 0.00032404 0.23865 0.00013348 0.81804 0.00045752 559.2877028126846 64.056 0.69559 67.514 67.244 67.94 3.4578 95 51 3 0 0 0 0.10225 1 14457 14457 33.445 17.598 1 386140 53262 3626 33141 33159 61460 61460 0.006777429603062046 VYSFGFERL 9 Unmodified _VYSFGFERL_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS UPN48_class_I_Rep_2 6 559.2885131835938 2 559.287474 1116.5604 0.53452 0.00029895 0.23075 0.00012905 0.76527 0.00042801 559.2877479952106 63.915 0.60423 67.389 67.147 67.752 3.4743 96 44 3 0 0 0 0.04399 2 14428 14428;14475 51.415 27.395 1 209270 53263 3626 33141 33159 61461;61462 61461 0.006777429603062046 VYSFGFERL 9 Unmodified _VYSFGFERL_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS UPN48_class_I_Rep_3 7 559.2871704101562 2 559.287474 1116.5604 0.43799 0.00024496 0.30336 0.00016966 0.74135 0.00041463 559.2876675732479 63.772 0.56514 67.281 67.128 67.693 3.5088 89 44 3 0 0 0 0.04399 4 14336 14334;14336;14339;14375 51.415 17.222 1 346130 53264 3626 33141 33159 61463;61464;61465;61466 61464 0.006777429603062046 VYSGGRYDL 9 Unmodified _VYSGGRYDL_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MSMS UPN48_class_I_Rep_1 5 515.2538452148438 2 515.253631 1028.49271 NaN NaN NaN NaN NaN NaN NaN 34.008 1 37.528 37.028 38.028 3.5201 0 0 0 0.36505 1 5384 5384 7.2892 0.93513 1 53265 4964 33142 33160 61467 61467 -0.020397069705268223 VYSGGRYDL 9 Unmodified _VYSGGRYDL_ 0 0 0 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 ENSG00000182631|ENST00000330120|RXFP3 MSMS UPN48_class_I_Rep_3 7 515.2538452148438 2 515.253631 1028.49271 NaN NaN NaN NaN NaN NaN NaN 33.891 1 37.57 37.07 38.07 3.6797 0 0 0 0.36505 1 5325 5325 7.2892 0.93513 1 53266 4964 33142 33160 61468 61468 -0.020397069705268223 VYSGKDHA 8 Unmodified _VYSGKDHA_ 0 0 0 ENST00000380985.9_1_5:65054612-65058826:+|nuORF ENST00000380985.9_1_5:65054612-65058826:+|nuORF ENST00000380985.9_1_5:65054612-65058826:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 438.21685791015625 2 438.714142 875.413731 -0.039637 -1.7389E-05 -2.7395 -0.0012019 -2.7792 -0.0012193 438.71307378792216 96.661 0.032524 100.27 100.25 100.28 3.6124 4 2 2 0 0 0 0.72333 1 23292 23292 4.3292 2.0265 1 41374 53267 6493 33143 33161 61469 61469 -0.0289593420482106 VYSGVQVLYF 10 Unmodified _VYSGVQVLYF_ 0 0 0 L1MB4_dup7383|chr16:47095168-47096730:+|1.2118221087914487|0.0401204297879155|4.92|150.0|88|2|anti-sense L1MB4_dup7383|chr16:47095168-47096730:+|1.2118221087914487|0.0401204297879155|4.92|150.0|88|2|anti-sense L1MB4_dup7383|chr16:47095168-47096730:+|1.2118221087914487|0.0401204297879155|4.92|150.0|88|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 587.8110961914062 2 587.810782 1173.60701 0.55974 0.00032902 0.10471 6.155E-05 0.66445 0.00039057 587.8107047164062 72.561 0.45559 76.098 75.714 76.17 3.5373 95 41 3 0 0 0 0.41718 1 16828 16828 18.146 0 1 241230 53268 10569 33144 33162 61470 61470 0.027151827915531612 VYSHVHRR 8 Unmodified _VYSHVHRR_ 0 0 0 ENST00000524197.1_1_6:72926891-72975792:+|nuORF;nc|ENSG00000079841|Q86UR5-10|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1 ENST00000524197.1_1_6:72926891-72975792:+|nuORF ENST00000524197.1_1_6:72926891-72975792:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 528.2905883789062 2 527.288674 1052.5628 0.52876 0.00027881 0.9664 0.00050957 1.4952 0.00078838 527.2898053201815 55.088 0.89364 58.644 58.216 59.11 3.5559 168 53 5 0 0 0 0.82752 1 11655 11655 8.5933 2.8329 1 453650 53269 1195 33145 33163 61471 61471 0.038616362086031586 VYSNSIYEL 9 Unmodified _VYSNSIYEL_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MULTI-MSMS UPN48_class_I_Rep_1 5 544.269287109375 2 544.268947 1086.52334 0.58242 0.00031699 0.041129 2.2385E-05 0.62354 0.00033938 544.2689096429524 61.28 0.83871 64.748 64.345 65.184 3.4678 196 75 3 0 0 0 0.0061372 4 13575 13575;13616;13650;13689 133.05 64.971 1 982500 53270 5060 33146 33164 61472;61473;61474;61475 61472 -0.01645973376139409 VYSNSIYEL 9 Unmodified _VYSNSIYEL_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MULTI-MSMS UPN48_class_I_Rep_2 6 544.2693481445312 2 544.268947 1086.52334 0.5459 0.00029712 0.16988 9.2461E-05 0.71578 0.00038958 544.2689419947064 61.187 0.8368 64.666 64.3 65.137 3.4785 191 69 4 0 0 0 0.0069835 4 13519 13519;13555;13593;13633 121.53 53.453 1 1134500 53271 5060 33146 33164 61476;61477;61478;61479 61476 -0.01645973376139409 VYSNSIYEL 9 Unmodified _VYSNSIYEL_ 0 0 0 ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENSG00000184584|ENST00000330794|STING1 ENSG00000184584|ENST00000330794|STING1 MULTI-MSMS UPN48_class_I_Rep_3 7 544.2692260742188 2 544.268947 1086.52334 0.49231 0.00026795 0.15418 8.3917E-05 0.6465 0.00035187 544.2689877034389 61.074 0.73508 64.587 64.249 64.984 3.5128 180 64 4 0 0 0 0.0060693 4 13422 13422;13459;13498;13540 133.05 64.971 1 1041400 53272 5060 33146 33164 61480;61481;61482;61483 61480 -0.01645973376139409 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3 nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-SECPEP UPN48_class_I_Rep_2 6 521.6572265625 2 521.290017 1040.56548 0.48672 0.00025372 -0.30384 -0.00015839 0.18288 9.5332E-05 521.2897782435073 54.858 0.89206 58.427 58.054 58.946 3.5691 144 53 4 0 0 0 5.6615E-09 1 11618 11618 96.111 47.765 1 751780 53273 1193 33147 33165 61484 61484 0.0468204682290434 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3 nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MATCH UPN48_class_I_Rep_1 5 2 521.290017 1040.56548 0.32531 0.00016958 -0.22081 -0.00011511 0.1045 5.4473E-05 521.2898337852147 54.799 0.96091 58.307 58.008 58.969 3.5082 -0.057596 -2.8331E-05 NaN 96.111 155 65 3 NaN NaN NaN NaN 0 NaN NaN 0 809500 53274 1193 33147 33165 0.0468204682290434 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3 nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MATCH UPN48_class_I_Rep_3 7 2 521.290017 1040.56548 0.26621 0.00013877 -0.056822 -2.9621E-05 0.20939 0.00010915 521.289900973435 54.791 0.88445 58.36 57.953 58.837 3.5694 -0.0044993 0.00014264 NaN 96.111 139 56 3 NaN NaN NaN NaN 0 NaN NaN 0 1115700 53275 1193 33147 33165 0.0468204682290434 VYSPLGSALA 10 Unmodified _VYSPLGSALA_ 0 0 0 REV__nc|ENSG00000133256|P35913-3|PDE6B REV__nc|ENSG00000133256|P35913-3|PDE6B MSMS UPN48_class_I_Rep_1 5 489.26873779296875 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 37.16 1 40.667 40.167 41.167 3.507 0 0 0 0.53105 1 6288 6288 14.838 0 1 + 53276 19056 33148 33166 61485 61485 0.03374651694662134 VYSPLGSALA 10 Unmodified _VYSPLGSALA_ 0 0 0 REV__nc|ENSG00000133256|P35913-3|PDE6B REV__nc|ENSG00000133256|P35913-3|PDE6B MSMS UPN48_class_I_Rep_2 6 489.26824951171875 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 36.859 1 40.561 40.061 41.061 3.7021 0 0 0 0.53105 1 6240 6240 14.838 0 1 + 53277 19056 33148 33166 61486 61486 0.03374651694662134 VYSPLGSALA 10 Unmodified _VYSPLGSALA_ 0 0 0 REV__nc|ENSG00000133256|P35913-3|PDE6B REV__nc|ENSG00000133256|P35913-3|PDE6B MULTI-MSMS UPN48_class_I_Rep_3 7 489.2674255371094 2 489.26875 976.522947 0.14623 7.1546E-05 -0.3696 -0.00018083 -0.22337 -0.00010929 489.2684344690846 36.85 0.27814 40.513 40.389 40.667 3.663 41 28 2 0 0 0 0.46161 2 6142 6142;6152 14.838 0 1 65600 + 53278 19056 33148 33166 61487;61488 61487 0.03374651694662134 VYSPLGSAYK 10 Unmodified _VYSPLGSAYK_ 0 0 0 ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9;nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9 ENST00000514806.5_1_5:54965038-54993786:-|nuORF ENST00000514806.5_1_5:54965038-54993786:-|nuORF MSMS UPN48_class_I_Rep_1 5 542.785888671875 2 542.787307 1083.56006 NaN NaN NaN NaN NaN NaN NaN 43.966 1 47.48 46.98 47.98 3.5132 0 0 0 0.53105 1 8313 8313 3.5965 0.70727 1 53279 4779 33149 33167 61489 61489 0.02162323240418118 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 ENST00000496204.1_1_5:131931266-131935763:+|nuORF ENST00000496204.1_1_5:131931266-131935763:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 549.79541015625 2 549.795132 1097.57571 0.51658 0.00028401 0.18378 0.00010104 0.70036 0.00038505 549.7951153744689 71.392 0.73016 74.858 74.543 75.274 3.466 129 67 3 0 0 0 0.048729 1 16714 16714 49.527 13.915 1 570530 53280 2048 33150 33168 61490 61490 0.030826097574845335 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 ENST00000496204.1_1_5:131931266-131935763:+|nuORF ENST00000496204.1_1_5:131931266-131935763:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.7953491210938 2 549.795132 1097.57571 0.48175 0.00026486 0.20411 0.00011222 0.68586 0.00037708 549.7950571904049 71.214 0.75633 74.764 74.479 75.235 3.5505 157 78 3 0 0 0 0.0055684 2 16591 16591;16630 78.06 16.459 1 491490 53281 2048 33150 33168 61491;61492 61491 0.030826097574845335 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 ENST00000496204.1_1_5:131931266-131935763:+|nuORF;nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 ENST00000496204.1_1_5:131931266-131935763:+|nuORF ENST00000496204.1_1_5:131931266-131935763:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 549.795166015625 2 549.795132 1097.57571 0.47741 0.00026248 0.13195 7.2547E-05 0.60936 0.00033502 549.7950770289265 71.198 0.67516 74.716 74.424 75.099 3.5185 141 64 3 0 0 0 0.048729 2 16498 16498;16577 49.527 7.5717 1 511330 53282 2048 33150 33168 61493;61494 61493 0.030826097574845335 VYSQNIIFQ 9 Unmodified _VYSQNIIFQ_ 0 0 0 L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense;L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|121|2|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense L1MC3_dup4894|chr6:107388758-107390773:+|2.422246232364197|0.0140059220928907|7.43|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.305419921875 2 556.292756 1110.57096 NaN NaN NaN NaN NaN NaN NaN 67.469 1 70.965 70.465 71.465 3.4964 0 0 0 0.18866 1 15495 15495 17.113 0.96379 1 53283 11348 33151 33169 61495 61495 0.02009725614720992 VYSRADFRS 9 Unmodified _VYSRADFRS_ 0 0 0 ENST00000449943.5_1_11:64896947-64897013:-|nuORF ENST00000449943.5_1_11:64896947-64897013:-|nuORF ENST00000449943.5_1_11:64896947-64897013:-|nuORF MSMS UPN48_class_I_Rep_3 7 550.8306884765625 2 550.777805 1099.54106 NaN NaN NaN NaN NaN NaN NaN 51.697 1 55.308 54.808 55.808 3.6105 0 0 0 0.37891 1 10617 10617 5.7319 1.4026 1 53284 6807 33152 33170 61496 61496 -0.004732133306333708 VYSRNQGLF 9 Unmodified _VYSRNQGLF_ 0 0 0 REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674 REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674 MULTI-MSMS UPN48_class_I_Rep_2 6 542.2830200195312 2 542.282723 1082.55089 0.40278 0.00021842 0.0089583 4.8579E-06 0.41174 0.00022328 542.2827267241566 44.374 0.87041 48.136 47.772 48.642 3.7617 130 64 3 0 0 0 0.21527 4 8416 8416;8457;8509;8543 19.257 10.824 1 205620 + 53285 21358 33153 33171 61497;61498;61499;61500 61497 0.012919746747684258 VYSSRKRRP 9 Unmodified _VYSSRKRRP_ 0 0 0 REV__MER4E1_dup699|chr11:75332248-75332614:+|1.2854097255365469|0.0118270342314068|6.76|151.0|18|1|anti-sense REV__MER4E1_dup699|chr11:75332248-75332614:+|1.2854097255365469|0.0118270342314068|6.76|151.0|18|1|anti-sense MSMS UPN48_class_I_Rep_1 5 574.8369140625 2 574.835988 1147.65742 NaN NaN NaN NaN NaN NaN NaN 73.629 1 77.11 76.61 77.61 3.4812 0 0 0 0.4007 1 17362 17362 0.52476 0 1 + 53286 31366 33154 33172 61501 61501 0.08950149959923692 VYSSRLTYL 9 Unmodified _VYSSRLTYL_ 0 0 0 L1MC5a_dup6051|chr6:24860205-24860785:+|1.8984367368993336|0.0708547579430692|4.74|150.0|15|2|sense L1MC5a_dup6051|chr6:24860205-24860785:+|1.8984367368993336|0.0708547579430692|4.74|150.0|15|2|sense L1MC5a_dup6051|chr6:24860205-24860785:+|1.8984367368993336|0.0708547579430692|4.74|150.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 551.3002319335938 2 551.300581 1100.58661 0.38878 0.00021434 -0.12724 -7.0146E-05 0.26155 0.00014419 551.3006145098575 65.42 0.5928 68.776 68.45 69.043 3.3557 55 32 2 0 0 0 0.35081 1 15673 15673 10.824 3.5347 1 100220 53287 11758 33155 33173 61502 61502 0.04034012131751297 VYSTMLVFF 9 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ VYSTM(1)LVFF VYSTM(44)LVFF 0 0 1 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS UPN48_class_I_Rep_2 6 561.7815551757812 2 561.780636 1121.54672 0.49085 0.00027575 0.0011399 6.4037E-07 0.49199 0.00027639 561.7804932574605 84.182 0.49321 87.876 87.654 88.147 3.6937 101 64 2 0 0 0 0.060667 1 20044 20044 44.407 8.3628 1 185070 53288 1695 33156 33174 61503 61503 51 -0.009192508631713281 VYSTMLVFF 9 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ VYSTM(1)LVFF VYSTM(44)LVFF 0 0 1 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS UPN48_class_I_Rep_3 7 562.2832641601562 2 561.780636 1121.54672 0.45177 0.0002538 0.15103 8.4844E-05 0.6028 0.00033864 561.7806399235008 84.181 0.52415 87.91 87.659 88.183 3.7281 96 66 2 0 0 0 0.060667 2 19961 19961;19973 44.407 14.182 1 191130 53289 1695 33156 33174 61504;61505 61504 51 -0.009192508631713281 VYSTMLVFF 9 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ 0 0 1 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MATCH UPN48_class_I_Rep_1 5 2 561.780636 1121.54672 0.46271 0.00025994 -0.038213 -2.1467E-05 0.4245 0.00023848 561.7804777099473 84.268 0.052284 87.865 87.819 87.871 3.5973 -0.018375 -0.00011483 NaN 44.407 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 55934 53290 1695 33156 33174 51 -0.009192508631713281 VYSTPTPFF 9 Unmodified _VYSTPTPFF_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MULTI-MSMS UPN48_class_I_Rep_3 7 529.7633056640625 2 529.7633 1057.51205 0.5392 0.00028565 -0.40594 -0.00021505 0.13326 7.0599E-05 529.7630777058455 73.308 0.39307 76.845 76.67 77.063 3.5373 49 41 2 0 0 0 0.12799 1 17145 17145 28.487 11.545 1 99174 53291 797 33157 33175 61506 61506 -0.01440750679626035 VYSVVPPHSF 10 Unmodified _VYSVVPPHSF_ 0 0 0 L1MC4a_dup1446|chr2:207568699-207569488:-|1.3427932056714604|0.1400978493473001|3.26|151.0|44|3|anti-sense L1MC4a_dup1446|chr2:207568699-207569488:-|1.3427932056714604|0.1400978493473001|3.26|151.0|44|3|anti-sense L1MC4a_dup1446|chr2:207568699-207569488:-|1.3427932056714604|0.1400978493473001|3.26|151.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.797607421875 2 566.295299 1130.57605 0.48555 0.00027497 0.74967 0.00042453 1.2352 0.0006995 566.2957784942308 69.794 0.1105 73.315 73.251 73.362 3.5216 9 7 2 0 0 0 0.56333 1 16197 16197 1.4819 0 1 42421 53292 11552 33158 33176 61507 61507 0.015980294773271453 VYTCIHIYI 9 Unmodified _VYTCIHIYI_ 0 0 0 REV__L1MC3_dup1342|chr2:111385150-111388191:-|1.3110158367889355|0.0282853529628461|5.53|150.0|153|2|anti-sense REV__L1MC3_dup1342|chr2:111385150-111388191:-|1.3110158367889355|0.0282853529628461|5.53|150.0|153|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.795166015625 2 562.794078 1123.5736 0.28205 0.00015874 0.83406 0.00046941 1.1161 0.00062814 562.7946628784928 54.171 0.24938 57.74 57.589 57.839 3.5694 21 14 2 0 0 0 0.40174 1 11364 11364 7.9102 2.6795 1 132140 + 53293 26724 33159 33177 61508 61508 0.016758577480004533 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS UPN48_class_I_Rep_1 5 566.2953491210938 2 566.295299 1130.57605 0.46667 0.00026428 0.42193 0.00023894 0.8886 0.00050321 566.295194583641 69.441 0.98286 72.896 72.409 73.392 3.4548 122 67 3 0 0 0 0.0053074 2 16099 16099;16147 79.596 39.647 1 497870 53294 3930 33160 33178 61509;61510 61509 0.015980294773271453 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS UPN48_class_I_Rep_2 6 566.2957763671875 2 566.295299 1130.57605 0.48987 0.00027741 0.33775 0.00019127 0.82762 0.00046868 566.2953413843113 69.169 0.88442 72.69 72.263 73.147 3.5216 154 66 3 0 0 0 0.0053074 4 16018 16018;16059;16091;16101 79.596 39.647 1 439690 53295 3930 33160 33178 61511;61512;61513;61514 61511 0.015980294773271453 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS UPN48_class_I_Rep_3 7 566.2955322265625 2 566.295299 1130.57605 0.50603 0.00028656 0.24419 0.00013829 0.75022 0.00042485 566.2954200567629 69.017 0.96837 72.526 72.222 73.19 3.5094 153 73 3 0 0 0 0.0074098 4 15912 15817;15912;15960;15999 110.67 45.44 1 468830 53296 3930 33160 33178 61515;61516;61517;61518 61516 0.015980294773271453 VYTDTIQQR 9 Unmodified _VYTDTIQQR_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.290745 1122.56694 NaN NaN NaN NaN NaN NaN NaN 31.368 1 31.368 30.868 31.868 0 0 0 0 0.38639 1 5232 5232 3.9444 0.3479 1 53297 1494 33161 33179 61519 61519 0.010556361209864917 VYTFRIRF 8 Unmodified _VYTFRIRF_ 0 0 0 REV__L1MEf_dup11249|chr20:1154946-1156880:+|3.337640821498171|0.478372746758352|2.8|151.0|100|2|anti-sense REV__L1MEf_dup11249|chr20:1154946-1156880:+|3.337640821498171|0.478372746758352|2.8|151.0|100|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 550.815673828125 2 551.313826 1100.6131 0.3133 0.00017273 3.5927 0.0019807 3.906 0.0021534 551.3174388889073 39.675 0.064781 43.33 43.284 43.348 3.6557 6 5 2 0 0 0 0.72333 1 6961 6961 2.8892 2.0956 1 37510 + 53298 28602 33162 33180 61520 61520 0.06681745813739326 VYTLDSSVLF 10 Unmodified _VYTLDSSVLF_ 0 0 0 REV__ENSG00000127526|ENST00000595753|SLC35E1 REV__ENSG00000127526|ENST00000595753|SLC35E1 MSMS UPN48_class_I_Rep_3 7 571.8143310546875 2 572.300247 1142.58594 NaN NaN NaN NaN NaN NaN NaN 55.61 1 59.165 58.665 59.665 3.5554 0 0 0 0.53105 1 11805 11805 3.5965 1.2938 1 + 53299 18877 33163 33181 61521 61521 0.02035172692035303 VYTLLTTHL 9 Unmodified _VYTLLTTHL_ 0 0 0 nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL MSMS UPN48_class_I_Rep_1 5 530.8057250976562 2 530.8055 1059.59645 NaN NaN NaN NaN NaN NaN NaN 61.401 1 64.869 64.369 65.369 3.4678 0 0 0 0.089203 1 13657 13657 26.884 8.7373 1 53300 4646 33164 33182 61522 61522 0.06903200137116983 VYTLLTTHL 9 Unmodified _VYTLLTTHL_ 0 0 0 nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL MSMS UPN48_class_I_Rep_2 6 530.8057250976562 2 530.8055 1059.59645 NaN NaN NaN NaN NaN NaN NaN 61.249 1 64.727 64.227 65.227 3.4785 0 0 0 0.29868 1 13591 13591 10.824 1.4408 1 53301 4646 33164 33182 61523 61523 0.06903200137116983 VYTNFALTS 9 Unmodified _VYTNFALTS_ 0 0 0 REV__ENSG00000135744|ENST00000366667|AGT REV__ENSG00000135744|ENST00000366667|AGT MULTI-MSMS UPN48_class_I_Rep_1 5 508.7600402832031 2 508.258382 1014.50221 0.37622 0.00019122 -0.043827 -2.2275E-05 0.3324 0.00016894 508.7599372661229 61.81 0.40981 65.278 65.11 65.52 3.4678 48 37 2 0 0 0 0.37599 1 13774 13774 9.3831 0 1 153580 + 53302 19152 33165 33183 61524 61524 -0.004459386850044211 VYTQRERNH 9 Unmodified _VYTQRERNH_ 0 0 0 L1PB4_dup2167|chr5:37236162-37237564:+|1.214473041425718|0.0145524613833116|6.38|151.0|8|1|sense L1PB4_dup2167|chr5:37236162-37237564:+|1.214473041425718|0.0145524613833116|6.38|151.0|8|1|sense L1PB4_dup2167|chr5:37236162-37237564:+|1.214473041425718|0.0145524613833116|6.38|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 601.8049926757812 2 601.804885 1201.59522 NaN NaN NaN NaN NaN NaN NaN 85.395 1 89.144 88.644 89.644 3.7494 0 0 0 0.39326 1 20248 20248 2.3027 0 1 53303 15295 33166 33184 61525 61525 0.002483788209474369 VYTQSIIYH 9 Unmodified _VYTQSIIYH_ 0 0 0 L1PA6_dup1767|chr4:165265609-165270909:-|2.1973395311177266|0.2057772026237083|3.42|151.0|55|1|sense L1PA6_dup1767|chr4:165265609-165270909:-|2.1973395311177266|0.2057772026237083|3.42|151.0|55|1|sense L1PA6_dup1767|chr4:165265609-165270909:-|2.1973395311177266|0.2057772026237083|3.42|151.0|55|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.2922973632812 2 562.292756 1122.57096 0.48118 0.00027057 -0.24965 -0.00014038 0.23153 0.00013019 562.292554582386 54.311 0.6582 57.826 57.543 58.201 3.5143 94 48 3 0 0 0 0.20276 2 11511 11417;11511 20.454 2.3073 1 195540 53304 14571 33167 33185 61526;61527 61527 0.014577256147049411 VYTTTVHWL 9 Unmodified _VYTTTVHWL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_1 5 560.2952270507812 2 560.295299 1118.57605 0.56798 0.00031824 -0.49457 -0.00027711 0.073409 4.1131E-05 560.2949338591835 57.97 0.59716 61.457 61.137 61.734 3.487 63 39 2 0 0 0 0.17468 4 12546 12546;12588;12597;12644 23.148 14.993 1 169940 53305 4671 33168 33186 61528;61529;61530;61531 61528 0.021500294773204587 VYTTTVHWL 9 Unmodified _VYTTTVHWL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_2 6 560.2960815429688 2 560.295299 1118.57605 0.59192 0.00033165 -0.20027 -0.00011221 0.39165 0.00021944 560.2951627806532 57.835 0.56126 61.349 61.2 61.761 3.5142 59 37 2 0 0 0 0.23311 4 12529 12511;12529;12577;12614 18.135 8.349 1 125090 53306 4671 33168 33186 61532;61533;61534;61535 61533 0.021500294773204587 VYTTTVHWL 9 Unmodified _VYTTTVHWL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_3 7 560.2962036132812 2 560.295299 1118.57605 0.35119 0.00019677 0.18246 0.00010223 0.53365 0.000299 560.2953318411709 57.816 0.51808 61.348 61.041 61.559 3.5317 50 35 2 0 0 0 0.12799 3 12469 12419;12469;12475 28.487 19.894 1 113320 53307 4671 33168 33186 61536;61537;61538 61537 0.021500294773204587 VYTVQIFNY 9 Unmodified _VYTVQIFNY_ 0 0 0 REV__HAL1_dup21735|chr20:3959600-3959820:-|1.177956139830712|0.0463072332793054|4.67|150.0|16|3|anti-sense REV__HAL1_dup21735|chr20:3959600-3959820:-|1.177956139830712|0.0463072332793054|4.67|150.0|16|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 574.2970581054688 2 573.795132 1145.57571 0.30413 0.00017451 0.12071 6.9263E-05 0.42484 0.00024377 573.7950439364812 53.871 1.1017 57.399 57.036 58.137 3.5278 147 58 4 0 0 0 0.43153 1 12298 12298 6.2058 2.2614 1 402880 + 53308 23405 33169 33187 61539 61539 0.008746097574885425 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(100)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_1 5 559.757568359375 2 559.757358 1117.50016 0.60049 0.00033613 -0.35453 -0.00019845 0.24596 0.00013768 559.7570739181233 62.632 0.66012 66.095 65.746 66.407 3.4625 104 45 3 0 0 0 0.013282 2 14017 14017;14055 104.8 70.697 1 295650 53309 873 33170 33188 61540;61541 61540 16 -0.053887354851212876 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(89)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_2 6 559.7574462890625 2 559.757358 1117.50016 0.54486 0.00030499 -0.20891 -0.00011694 0.33595 0.00018805 559.7571782551669 62.513 0.61401 65.987 65.681 66.295 3.4738 98 43 3 0 0 0 0.0064938 2 14001 13959;14001 88.904 68.45 1 330420 53310 873 33170 33188 61542;61543 61543 16 -0.053887354851212876 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(100)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_3 7 559.7576904296875 2 559.757358 1117.50016 0.42805 0.0002396 -0.18583 -0.00010402 0.24222 0.00013558 559.7571191648781 62.407 0.62204 65.917 65.57 66.192 3.5104 81 49 3 0 0 0 0.014412 1 13883 13883 100.37 73.488 1 260950 53311 873 33170 33188 61544 61544 16 -0.053887354851212876 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(93)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MSMS UPN48_class_I_Rep_3 7 559.7572631835938 2 559.757358 1117.50016 NaN NaN NaN NaN NaN NaN NaN 62.338 1 65.849 65.349 66.349 3.5104 0 0 0 3.3371E-17 1 13850 13850 92.822 62.597 1 53312 873 33170 33188 61545 61545 16 -0.053887354851212876 VYTVVDEMFL 10 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ VYTVVDEM(1)FL VYTVVDEM(54)FL 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MSMS UPN48_class_I_Rep_1 5 616.301513671875 2 616.29939 1230.58423 NaN NaN NaN NaN NaN NaN NaN 75.552 1 79.051 78.551 79.551 3.4996 0 0 0 0.53105 1 17905 17905 53.833 23.992 1 53313 873 33171 33189 61546 61546 16 -0.021842043882088547 VYTVVDEMFL 10 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ VYTVVDEM(1)FL VYTVVDEM(66)FL 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS UPN48_class_I_Rep_3 7 616.8018188476562 2 616.29939 1230.58423 0.62173 0.00038317 -0.13534 -8.3409E-05 0.48639 0.00029976 616.2993088655016 75.402 0.47681 78.968 78.792 79.269 3.5659 75 51 2 0 0 0 0.14952 2 17735 17699;17735 66.457 32.354 1 121350 53314 873 33171 33189 61547;61548 61548 16 -0.021842043882088547 VYTYALEKH 9 Unmodified _VYTYALEKH_ 0 0 0 REV__ENSG00000187037|ENST00000334425|GPR141 REV__ENSG00000187037|ENST00000334425|GPR141 MULTI-MSMS UPN48_class_I_Rep_2 6 562.2926025390625 2 562.292756 1122.57096 0.58821 0.00033075 -0.2185 -0.00012286 0.36971 0.00020788 562.2924671559082 54.223 0.60343 57.804 57.575 58.178 3.5817 81 36 3 0 0 0 0.23293 1 11501 11501 18.146 3.3081 1 190550 + 53315 20916 33172 33190 61549 61549 0.014577256147049411 VYTYITNLH 9 Unmodified _VYTYITNLH_ 0 0 0 L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|178|3|sense L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|178|3|sense L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|178|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.2911376953125 2 562.292756 1122.57096 0.58821 0.00033075 -0.2185 -0.00012286 0.36971 0.00020788 562.2924671559082 54.223 0.60343 57.804 57.575 58.178 3.5817 81 36 3 0 0 0 0.28552 1 11417 11417 14.838 0 1 190550 53316 14905 33173 33191 61550 61550 0.014577256146822037 VYTYITNLH 9 Unmodified _VYTYITNLH_ 0 0 0 L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|178|3|sense L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|178|3|sense L1PA7_dup8644|chrX:130813450-130819874:+|1.2111231161820986|0.2317140038756827|2.39|151.0|178|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 562.2932739257812 2 562.292756 1122.57096 0.28383 0.00015959 -0.2205 -0.00012398 0.063329 3.561E-05 562.2925678541592 54.254 0.5335 57.824 57.564 58.098 3.5694 52 35 2 0 0 0 0.28552 1 11410 11410 14.838 0 1 218150 53317 14905 33173 33191 61551 61551 0.014577256146822037 VYVAIQAVL 9 Unmodified _VYVAIQAVL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-MSMS UPN48_class_I_Rep_1 5 488.2974548339844 2 488.29731 974.580068 0.17814 8.6984E-05 0.12297 6.0048E-05 0.30111 0.00014703 488.29732160224836 76.843 0.5075 80.354 80.222 80.729 3.5102 73 51 2 0 0 0 0.13631 4 18307 18238;18275;18307;18345 26.884 7.6267 1 270070 53318 3060 33174 33192 61552;61553;61554;61555 61554 0.0917611897103825 VYVAIQAVL 9 Unmodified _VYVAIQAVL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-MSMS UPN48_class_I_Rep_2 6 488.2978820800781 2 488.29731 974.580068 0.25152 0.00012282 0.056371 2.7526E-05 0.3079 0.00015034 488.2972772831881 76.788 0.85026 80.4 80.132 80.982 3.6116 132 86 2 0 0 0 0.029391 5 18126 18090;18126;18159;18194;18241 57.471 19.497 1 297280 53319 3060 33174 33192 61556;61557;61558;61559;61560 61557 0.0917611897103825 VYVAIQAVL 9 Unmodified _VYVAIQAVL_ 0 0 0 nc|ENSG00000138071|P61160-2|ACTR2;ENSG00000138071|ENST00000260641|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 nc|ENSG00000138071|P61160-2|ACTR2 MULTI-MSMS UPN48_class_I_Rep_3 7 488.2973327636719 2 488.29731 974.580068 0.28049 0.00013696 0.099327 4.8501E-05 0.37982 0.00018546 488.2972970127589 76.836 0.80309 80.438 80.12 80.924 3.6016 165 75 3 0 0 0 0.051515 5 18160 18052;18086;18120;18160;18199 48.346 17.709 1 428520 53320 3060 33174 33192 61561;61562;61563;61564;61565 61564 0.0917611897103825 VYVALNHTF 9 Unmodified _VYVALNHTF_ 0 0 0 REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 532.267578125 2 532.282192 1062.54983 0.45977 0.00024473 -0.0055219 -2.9392E-06 0.45425 0.00024179 532.2821767916843 58.795 1.0516 62.282 61.844 62.896 3.487 187 66 4 0 0 0 0.25207 2 13036 12984;13036 16.942 4.4107 1 1019900 + 53321 29938 33175 33193 61566;61567 61567 0.02105760305835247 VYVALNHTF 9 Unmodified _VYVALNHTF_ 0 0 0 REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.2674560546875 2 532.282192 1062.54983 0.52014 0.00027686 -0.090424 -4.8131E-05 0.42972 0.00022873 532.2821050905047 58.724 1.1061 62.223 61.805 62.912 3.4987 179 68 4 0 0 0 0.25207 1 12989 12989 16.942 4.4107 1 1120800 + 53322 29938 33175 33193 61568 61568 0.02105760305835247 VYVALNHTF 9 Unmodified _VYVALNHTF_ 0 0 0 REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.2678833007812 2 532.282192 1062.54983 0.48157 0.00025633 0.56967 0.00030322 1.0512 0.00055956 532.7842876695747 59.354 0.15996 62.877 62.825 62.985 3.5231 15 11 2 0 0 0 0.25207 1 12947 12947 16.942 2.3606 1 46628 + 53323 29938 33175 33193 61569 61569 0.02105760305835247 VYVALNHTF 9 Unmodified _VYVALNHTF_ 0 0 0 REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense REV__L1PA6_dup5462|chr17:60483693-60488326:-|3.2468135315418296|0.1191288118119191|4.77|151.0|195|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 532.3057861328125 2 532.282192 1062.54983 0.48157 0.00025633 0.56967 0.00030322 1.0512 0.00055956 532.7842876695747 59.354 0.15996 62.877 62.825 62.985 3.5231 15 11 2 0 0 0 0.10341 1 12975 12975 16.942 4.4107 1 46628 + 53324 29938 33175 33193 61570 61570 0.02105760305835247 VYVDFFFTSC 10 Unmodified _VYVDFFFTSC_ 0 0 0 L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|49|2|anti-sense L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|49|2|anti-sense L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|49|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 410.5242919921875 3 409.851209 1226.5318 -0.19805 -8.1173E-05 3.352 0.0013738 3.1539 0.0012926 409.8522235345835 49.01 0.14166 52.669 52.613 52.754 3.6592 9 8 2 0 0 0 0.84575 1 10620 10620 1.9064 0.1641 1 25125 53325 12734 33176 33194 61571 61571 -0.07240742731141836 VYVDFFFTSC 10 Unmodified _VYVDFFFTSC_ 0 0 0 L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|49|2|anti-sense L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|49|2|anti-sense L1ME3B_dup7342|chr18:2758078-2758925:-|3.299291800182238|0.1128465988899411|4.87|151.0|49|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 409.851209 1226.5318 -0.65909 -0.00027013 2.9353 0.001203 2.2762 0.0009329 409.8522712738785 49.53 0.19488 52.756 52.621 52.816 3.2262 0.04372 -0.00011587 NaN 1.9064 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 34535 53326 12734 33176 33194 -0.07240742731141836 VYVDFNVYRG 10 Unmodified _VYVDFNVYRG_ 0 0 0 L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|30|1|sense L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|30|1|sense L1MDa_dup1197|chr3:45433020-45435913:-|1.5834802420137677|0.0200300443679019|6.3|151.0|30|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 616.3089599609375 2 616.308938 1230.60332 0.40137 0.00024737 -0.34934 -0.0002153 0.052029 3.2066E-05 616.3086417823271 46.057 0.60248 49.815 49.577 50.179 3.7579 56 38 2 0 0 0 0.56078 1 9006 9006 3.2813 0.97858 1 116320 53327 12087 33177 33195 61572 61572 -0.0027548698230930313 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS UPN48_class_I_Rep_1 5 539.802490234375 2 539.300581 1076.58661 0.37147 0.00020033 0.17285 9.322E-05 0.54432 0.00029355 539.3004670182527 44.954 0.34386 48.467 48.238 48.582 3.5132 43 24 2 0 0 0 0.17897 2 8618 8618;8622 22.736 8.8302 1 138460 53328 1336 33178 33196 61573;61574 61573 0.05138012131760661 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS UPN48_class_I_Rep_2 6 539.3012084960938 2 539.300581 1076.58661 0.38776 0.00020912 -0.52325 -0.00028219 -0.13548 -7.3067E-05 539.2999497536372 44.649 0.67633 48.411 48.101 48.778 3.7617 74 46 2 0 0 0 0.24936 2 8500 8500;8542 17.113 3.2068 1 152340 53329 1336 33178 33196 61575;61576 61575 0.05138012131760661 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS UPN48_class_I_Rep_3 7 539.30078125 2 539.300581 1076.58661 0.47821 0.0002579 -0.41132 -0.00022183 0.066888 3.6073E-05 539.2999429599272 44.775 0.4225 48.412 48.324 48.746 3.6372 44 25 2 0 0 0 0.32682 1 8539 8539 12.241 2.8575 1 170600 53330 1336 33178 33196 61577 61577 0.05138012131760661 VYVFTIVQ 8 Unmodified _VYVFTIVQ_ 0 0 0 L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|90|1|anti-sense L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|90|1|anti-sense L1PA16_dup6242|chr7:92189899-92192047:-|3.1233982892372256|0.1484187775461193|4.4|151.0|90|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.7762756347656 2 484.776211 967.537869 NaN NaN NaN NaN NaN NaN NaN 36.448 1 40.114 39.614 40.614 3.6667 0 0 0 0.40738 1 6034 6034 0.79363 0 1 53331 14111 33179 33197 61578 61578 0.05280143562674766 VYVGFQVQL 9 Unmodified _VYVGFQVQL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN48_class_I_Rep_3 7 526.7913818359375 2 526.792392 1051.57023 0.49796 0.00026232 -0.37906 -0.00019969 0.1189 6.2633E-05 526.791961435173 77.965 0.46818 81.587 81.414 81.882 3.6215 74 52 2 0 0 0 0.28552 1 18460 18460 14.838 4.7643 1 99718 53332 4671 33180 33198 61579 61579 0.046509309656585174 VYVGFQVQL 9 Unmodified _VYVGFQVQL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.792392 1051.57023 0.39714 0.00020921 -0.4004 -0.00021093 -0.0032564 -1.7154E-06 526.7921093423755 78.037 0.48566 81.659 81.351 81.837 3.6222 0.036191 -1.1466E-05 NaN 14.838 69 49 2 NaN NaN NaN NaN 0 NaN NaN 0 65054 53333 4671 33180 33198 0.046509309656585174 VYVGSSLTY 9 Unmodified _VYVGSSLTY_ 0 0 0 REV__L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|172|1|anti-sense REV__L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|172|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 494.75286865234375 2 494.752933 987.491313 0.208 0.00010291 0.097298 4.8139E-05 0.3053 0.00015105 494.7527769506865 74.252 0.23956 77.742 77.685 77.925 3.49 40 29 2 0 0 0 0.28552 1 17590 17590 14.838 0 1 128900 + 53334 30014 33181 33199 61580 61580 -0.0029334105928455756 VYVGSSLTY 9 Unmodified _VYVGSSLTY_ 0 0 0 REV__L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|172|1|anti-sense REV__L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|172|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 494.7528381347656 2 494.752933 987.491313 0.26828 0.00013273 -0.41023 -0.00020296 -0.14194 -7.0226E-05 494.7526829404544 74.003 0.47687 77.581 77.289 77.766 3.5779 79 53 2 0 0 0 0.28552 2 17325 17325;17446 14.838 4.7643 1 183670 + 53335 30014 33181 33199 61581;61582 61581 -0.0029334105928455756 VYVIKSHF 8 Unmodified _VYVIKSHF_ 0 0 0 L1ME3G_dup12105|chr12:118323629-118323781:+|1.422719081447034|0.0026432906642637|9.07|151.0|2|1|sense L1ME3G_dup12105|chr12:118323629-118323781:+|1.422719081447034|0.0026432906642637|9.07|151.0|2|1|sense L1ME3G_dup12105|chr12:118323629-118323781:+|1.422719081447034|0.0026432906642637|9.07|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 496.7637023925781 2 496.781828 991.549102 NaN NaN NaN NaN NaN NaN NaN 49.705 1 53.326 52.826 53.826 3.621 0 0 0 0.37152 1 10006 10006 17.087 5.9721 1 53336 12824 33182 33200 61583 61583 0.05298965656800192 VYVKHLIK 8 Unmodified _VYVKHLIK_ 0 0 0 REV__L1M4a2_dup123|chr1:192173287-192175009:-|1.5756694827996938|0.0136886083356889|6.85|149.0|23|1|sense REV__L1M4a2_dup123|chr1:192173287-192175009:-|1.5756694827996938|0.0136886083356889|6.85|149.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 500.31988525390625 2 500.32112 998.627687 NaN NaN NaN NaN NaN NaN NaN 107.07 1 110.7 110.2 111.2 3.6299 0 0 0 0.40738 1 25795 25795 0.79363 0 1 + 53337 24501 33183 33201 61584 61584 0.12831817961887282 VYVKHSISF 9 Unmodified _VYVKHSISF_ 0 0 0 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant;ENSG00000185009|ENST00000355264|AP3M1 AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant AP3M1|p.C288Afs*6|1|0.09|ENSG00000185009|chr10:74126297-74126297|A/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 540.2984619140625 2 540.297842 1078.58113 NaN NaN NaN NaN NaN NaN NaN 38.242 1 41.747 41.247 42.247 3.5052 0 0 0 0.25702 1 6600 6600 13.042 2.9685 1 53338 401 33184 33202 61585 61585 0.04498333339938654 VYVKVMFI 8 Unmodified _VYVKVMFI_ 0 0 0 Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|107|2|anti-sense Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|107|2|anti-sense Tigger1_dup4712|chr6:20994590-20996837:-|1.3707641294178017|0.0245299061578702|5.8|151.0|107|2|anti-sense MSMS UPN47_class_I_Rep_3 4 499.78948974609375 2 499.790807 997.56706 NaN NaN NaN NaN NaN NaN NaN 24.491 1 27.842 27.342 28.342 3.3509 0 0 0 0.40404 1 3296 3296 5.2307 0 1 53339 33105 33185 33203 61586 61586 0.06817964587310144 VYVLALQAAR 10 Unmodified _VYVLALQAAR_ 0 0 0 REV__ENSG00000171773|ENST00000301944|NXNL1 REV__ENSG00000171773|ENST00000301944|NXNL1 MULTI-MSMS UPN48_class_I_Rep_2 6 552.3319702148438 2 552.332216 1102.64988 0.45581 0.00025176 0.60442 0.00033384 1.0602 0.0005856 552.3321799707367 50.079 0.84282 53.773 53.463 54.306 3.6946 91 55 3 0 0 0 0.53654 1 10332 10332 7.2892 1.0834 1 396210 + 53340 20421 33186 33204 61587 61587 0.10265997639635316 VYVNQVKVR 9 Unmodified _VYVNQVKVR_ 0 0 0 ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B MULTI-MSMS UPN47_class_I_Rep_1 2 553.3316650390625 2 552.82984 1103.64513 0.10257 5.6705E-05 -0.11389 -6.296E-05 -0.011314 -6.2549E-06 552.8296117642719 44.263 0.74417 47.958 47.535 48.279 3.6951 81 50 2 0 0 0 0.46869 1 9250 9250 3.9444 0 1 102230 53341 2896 33187 33205 61588 61588 0.09745113496887825 VYVNQVKVR 9 Unmodified _VYVNQVKVR_ 0 0 0 ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B MULTI-MSMS UPN47_class_I_Rep_2 3 552.829345703125 2 552.82984 1103.64513 0.18272 0.00010101 -0.47049 -0.0002601 -0.28777 -0.00015909 552.8296020798246 44.6 0.87377 47.955 47.628 48.501 3.3555 78 57 2 0 0 0 0.46869 3 9285 9285;9413;9436 3.9444 0 1 87234 53342 2896 33187 33205 61589;61590;61591 61589 0.09745113496887825 VYVNQVKVR 9 Unmodified _VYVNQVKVR_ 0 0 0 ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B MULTI-MSMS UPN47_class_I_Rep_3 4 552.8286743164062 2 552.82984 1103.64513 0.21072 0.00011649 -0.17228 -9.5241E-05 0.038445 2.1254E-05 552.8296781242598 44.897 0.76068 48.141 47.656 48.417 3.2441 67 47 2 0 0 0 0.46869 2 9401 9401;9501 3.9444 0 1 91182 53343 2896 33187 33205 61592;61593 61592 0.09745113496887825 VYVPDRRS 8 Unmodified _VYVPDRRS_ 0 0 0 ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|2|intron;ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|3|intron;ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|4|intron;ENST00000510738.2_1_12:19413894-19459437:+|nuORF;ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|1|intron;ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|5|intron;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5 ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|2|intron ENSG00000052126.14,PLEKHA5,chr12,+,I19.1,19287557,19290676|48|9.58|2|intron MSMS UPN48_class_I_Rep_3 7 496.2721862792969 2 496.269616 990.524678 NaN NaN NaN NaN NaN NaN NaN 49.133 1 52.762 52.262 53.262 3.6291 0 0 0 0.38221 1 9830 9830 14.582 2.9414 1 53344 922 33188 33206 61594 61594 0.029037055032858916 VYVPHLLN 8 Unmodified _VYVPHLLN_ 0 0 0 L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|215|3|anti-sense;L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|182|1|anti-sense;L1PA5_dup9117|chr13:31578664-31584627:-|1.2226456090866245|0.024603203537979|5.64|149.0|296|3|anti-sense;L1PA5_dup10275|chr16:81688663-81690400:-|1.0315024279847984|0.1849837636819905|2.48|151.0|93|3|anti-sense;L1PA5_dup10027|chr15:85051830-85057487:-|2.024132851660461|0.0884904238580746|4.52|150.0|172|1|anti-sense;L1PA5_dup8020|chr11:4051816-4053743:+|3.2374630099901958|0.0448981310374789|6.17|151.0|80|2|anti-sense;L1PA4_dup5881|chr8:47623151-47627399:+|7.781264352701988|0.1169935736636915|6.06|151.0|127|1|anti-sense;L1PA4_dup3800|chr5:53660006-53665971:-|3.7822936163565264|0.3061610850720977|3.63|151.0|242|2|anti-sense;L1PA3_dup4122|chr6:57334869-57340871:+|1.2884723371868338|0.0519221903419051|4.63|151.0|230|2|anti-sense;L1PA4_dup2822|chr4:52895177-52901291:-|1.9112731528891027|0.1657320517394659|3.53|151.0|305|3|anti-sense;L1PA5_dup693|chr1:231907167-231912735:-|4.213830471913982|0.0400776360720188|6.72|151.0|289|3|anti-sense L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|215|3|anti-sense L1PA15_dup1600|chr3:158392556-158396347:+|1.3639938982013238|0.0308713632646725|5.47|151.0|215|3|anti-sense MSMS UPN46_class_I_Rep_3 1 477.7740173339844 2 477.774003 953.533452 NaN NaN NaN NaN NaN NaN NaN 28.341 1 28.341 27.841 28.841 0 0 0 0 0.40581 1 4336 4336 2.8892 0 1 53345 13876 33189 33207 61595 61595 0.05482679139765878 VYVPKIVAILL 11 Unmodified _VYVPKIVAILL_ 0 0 0 L1MC4_dup10297|chr7:37339823-37340408:+|1.174249414881302|0.0079532227618357|7.21|150.0|27|1|anti-sense L1MC4_dup10297|chr7:37339823-37340408:+|1.174249414881302|0.0079532227618357|7.21|150.0|27|1|anti-sense L1MC4_dup10297|chr7:37339823-37340408:+|1.174249414881302|0.0079532227618357|7.21|150.0|27|1|anti-sense MSMS UPN46_class_I_Rep_3 1 614.4094848632812 2 614.407392 1226.80023 NaN NaN NaN NaN NaN NaN NaN 57.382 1 57.382 56.882 57.882 0 0 0 0 0.38417 1 12569 12569 0.35063 0.35063 1 53346 11392 33190 33208 61596 61596 0.1959034457861435 VYVPPKIF 8 Unmodified _VYVPPKIF_ 0 0 0 REV__nc|ENSG00000185019|O94941-2|UBOX5 REV__nc|ENSG00000185019|O94941-2|UBOX5 MSMS UPN47_class_I_Rep_3 4 481.78704833984375 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 48.148 1 51.388 50.888 51.888 3.2405 0 0 0 0.40581 1 10442 10442 2.8892 0 1 + 53347 20840 33191 33209 61597 61597 0.08137037804942793 VYVPQFPD 8 Unmodified _VYVPQFPD_ 0 0 0 L1PA4_dup2618|chr4:9080579-9086679:+|1.166756520102404|0.0919900633115754|3.66|148.0|315|3|anti-sense L1PA4_dup2618|chr4:9080579-9086679:+|1.166756520102404|0.0919900633115754|3.66|148.0|315|3|anti-sense L1PA4_dup2618|chr4:9080579-9086679:+|1.166756520102404|0.0919900633115754|3.66|148.0|315|3|anti-sense MSMS UPN47_class_I_Rep_1 2 482.7430725097656 2 482.742368 963.470183 NaN NaN NaN NaN NaN NaN NaN 70.905 1 74.276 73.776 74.776 3.3713 0 0 0 0.25635 1 17257 17257 39.957 3.8303 1 53348 14338 33192 33210 61598 61598 -0.013013063681455606 VYVPVPKQT 9 Unmodified _VYVPVPKQT_ 0 0 0 ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENSG00000188739|ENST00000408888|RBM34 ENST00000485019.1_1_1:235323532-235324526:-|nuORF ENST00000485019.1_1_1:235323532-235324526:-|nuORF MSMS UPN48_class_I_Rep_2 6 515.782470703125 2 515.800217 1029.58588 NaN NaN NaN NaN NaN NaN NaN 48.203 1 51.939 51.439 52.439 3.7361 0 0 0 0.35339 1 9605 9605 7.9102 1.5561 1 53349 5249 33193 33211 61599 61599 0.07227217482704873 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-3|LITAF nc|ENSG00000189067|Q99732-3|LITAF MULTI-MSMS UPN48_class_I_Rep_1 5 552.2981567382812 2 552.297842 1102.58113 0.50666 0.00027983 0.050894 2.8109E-05 0.55755 0.00030793 552.2977459025785 50.969 0.75215 54.494 54.176 54.928 3.5246 116 47 3 0 0 0 0.0069845 5 10475 10383;10435;10475;10519;10566 122.18 56.944 1 448030 53350 5268 33194 33212 61600;61601;61602;61603;61604 61602 0.033943333399292897 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-3|LITAF nc|ENSG00000189067|Q99732-3|LITAF MULTI-MSMS UPN48_class_I_Rep_2 6 552.298095703125 2 552.297842 1102.58113 0.4802 0.00026521 0.18911 0.00010445 0.66931 0.00036966 552.2977328658967 50.882 0.89481 54.55 54.129 55.024 3.6679 129 54 3 0 0 0 0.0051925 5 10386 10343;10386;10429;10467;10510 92.653 40.385 1 459140 53351 5268 33194 33212 61605;61606;61607;61608;61609 61606 0.033943333399292897 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-3|LITAF nc|ENSG00000189067|Q99732-3|LITAF MULTI-MSMS UPN48_class_I_Rep_3 7 552.298095703125 2 552.297842 1102.58113 0.2717 0.00015006 0.2835 0.00015658 0.5552 0.00030664 552.297853752055 50.995 0.76724 54.606 54.236 55.003 3.6105 131 51 3 0 0 0 0.0060693 5 10378 10335;10378;10417;10460;10512 122.18 47.25 1 459360 53352 5268 33194 33212 61610;61611;61612;61613;61614 61611 0.033943333399292897 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MULTI-SECPEP UPN48_class_I_Rep_1 5 531.8011474609375 2 531.321317 1060.62808 0.34533 0.00018348 0.044067 2.3414E-05 0.3894 0.0002069 531.3212615448339 52.749 0.55627 56.268 55.97 56.527 3.5192 70 43 2 0 0 0 0.060395 1 10941 10941 32.305 13.049 1 173100 53353 999 33195 33213 61615 61615 0.10019192891104467 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MULTI-SECPEP UPN48_class_I_Rep_2 6 531.800537109375 2 531.321317 1060.62808 0.46949 0.00024945 -0.20902 -0.00011106 0.26047 0.00013839 531.3211897320136 52.63 0.62686 56.269 55.971 56.598 3.639 74 42 2 0 0 0 0.076885 1 10897 10897 20.454 2.3073 1 175990 53354 999 33195 33213 61616 61616 0.10019192891104467 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MULTI-MSMS UPN48_class_I_Rep_3 7 531.321044921875 2 531.321317 1060.62808 0.36798 0.00019552 -0.35393 -0.00018805 0.014051 7.4658E-06 531.3211351319275 52.649 0.57435 56.247 55.985 56.56 3.5979 70 40 2 0 0 0 0.13631 1 10837 10837 26.884 12.978 1 173830 53355 999 33195 33213 61617 61617 0.10019192891104467 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 531.321317 1060.62808 0.36511 0.00019399 0.30421 0.00016164 0.66933 0.00035563 531.8230939515419 53.025 0.11784 56.608 56.546 56.663 3.5836 0.22644 0.0004291 NaN 32.305 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 46118 53356 999 33195 33213 0.10019192891104467 VYVRGLSFG 9 Unmodified _VYVRGLSFG_ 0 0 0 REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|222|1|anti-sense REV__L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|222|1|anti-sense MSMS UPN48_class_I_Rep_3 7 499.2756042480469 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 50.545 1 54.166 53.666 54.666 3.621 0 0 0 0.39326 1 10266 10266 2.3027 1.5091 1 + 53357 30079 33196 33214 61618 61618 0.040857776514371835 VYVRNYEF 8 Unmodified _VYVRNYEF_ 0 0 0 L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|51|1|anti-sense L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|51|1|anti-sense L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_1 5 545.2733764648438 2 545.271824 1088.5291 NaN NaN NaN NaN NaN NaN NaN 48.678 1 52.202 51.702 52.702 3.5239 0 0 0 0.40472 1 9756 9756 4.3292 0 1 53358 11542 33197 33215 61619 61619 -0.011628300738266262 VYVRNYEF 8 Unmodified _VYVRNYEF_ 0 0 0 L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|51|1|anti-sense L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|51|1|anti-sense L1MC4a_dup10175|chr22:21829077-21830244:+|3.588439531588489|0.0291119686191621|6.95|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_2 6 545.2724609375 2 545.271824 1088.5291 NaN NaN NaN NaN NaN NaN NaN 48.406 1 52.123 51.623 52.623 3.7175 0 0 0 0.40472 1 9668 9668 4.3292 0 1 53359 11542 33197 33215 61620 61620 -0.011628300738266262 VYVRPRVF 8 Unmodified _VYVRPRVF_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS UPN47_class_I_Rep_3 4 518.308837890625 2 518.308544 1034.60253 0.36013 0.00018666 -0.25156 -0.00013039 0.10857 5.6273E-05 518.3083383525754 108.76 0.66879 112.3 112.09 112.76 3.5382 143 77 2 0 0 0 0.82752 1 26818 26818 0.6015 0 1 165330000 53360 3289 33198 33216 61621 61621 0.08661763159329894 VYVRSRSVS 9 Unmodified _VYVRSRSVS_ 0 0 0 L1MEc_dup10187|chr9:85662821-85663707:+|1.4074731438825523|0.0378393123624985|5.22|151.0|48|2|anti-sense L1MEc_dup10187|chr9:85662821-85663707:+|1.4074731438825523|0.0378393123624985|5.22|151.0|48|2|anti-sense L1MEc_dup10187|chr9:85662821-85663707:+|1.4074731438825523|0.0378393123624985|5.22|151.0|48|2|anti-sense MSMS UPN47_class_I_Rep_3 4 526.7971801757812 2 526.795998 1051.57744 NaN NaN NaN NaN NaN NaN NaN 21.824 1 25.174 24.674 25.674 3.3496 0 0 0 0.39518 1 2508 2508 1.8442 0 1 53361 12992 33199 33217 61622 61622 0.05371663566097595 VYVSLMPSYF 10 Unmodified _VYVSLMPSYF_ 0 0 0 REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.2984008789062 2 603.299193 1204.58383 0.57914 0.00034939 -0.10109 -6.0986E-05 0.47805 0.00028841 603.2991182402304 61.441 1.2674 64.909 64.31 65.577 3.4678 229 114 3 0 0 0 0.46161 3 13587 13513;13587;13708 14.838 0.93222 1 239500 + 53362 27131 33200 33218 61623;61624;61625 61624 -0.0102757931740598 VYVSLMPSYF 10 Unmodified _VYVSLMPSYF_ 0 0 0 REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 603.2992553710938 2 603.299193 1204.58383 0.61038 0.00036824 0.33033 0.00019929 0.94071 0.00056753 603.2993278242785 55.434 1.227 58.989 58.396 59.623 3.5559 221 76 4 0 0 0 0.51565 1 11967 11967 10.074 0.6908 1 815330 + 53363 27131 33200 33218 61626 61626 -0.0102757931740598 VYVSLMPSYF 10 Unmodified _VYVSLMPSYF_ 0 0 0 REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 603.2993774414062 2 603.299193 1204.58383 NaN NaN NaN NaN NaN NaN NaN 61.195 1 64.673 64.173 65.173 3.4785 0 0 0 0.53105 1 13574 13574 14.838 0.93222 1 + 53364 27131 33200 33218 61627 61627 -0.0102757931740598 VYVSLMPSYF 10 Unmodified _VYVSLMPSYF_ 0 0 0 REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 603.2991333007812 2 603.299193 1204.58383 0.42293 0.00025516 0.58225 0.00035127 1.0052 0.00060643 603.2994923515665 55.389 1.169 58.945 58.371 59.54 3.5554 209 73 4 0 0 0 0.46161 1 11878 11878 14.838 0.93222 1 1056500 + 53365 27131 33200 33218 61628 61628 -0.0102757931740598 VYVSLMPSYF 10 Unmodified _VYVSLMPSYF_ 0 0 0 REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense REV__L1MC5a_dup14648|chr16:81511028-81511570:-|1.5401912601292471|0.017194942848148|6.48|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 603.2996215820312 2 603.299193 1204.58383 0.5452 0.00032892 0.11147 6.725E-05 0.65667 0.00039617 603.2992366423738 61.131 1.0441 64.644 64.343 65.387 3.5129 180 90 3 0 0 0 0.51565 1 13467 13467 10.074 0.6908 1 229450 + 53366 27131 33200 33218 61629 61629 -0.0102757931740598 VYVTFEVFK 9 Unmodified _VYVTFEVFK_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS UPN48_class_I_Rep_3 7 566.2899780273438 2 566.307875 1130.6012 NaN NaN NaN NaN NaN NaN NaN 70.773 1 74.291 73.791 74.791 3.5185 0 0 0 0.1724 1 16393 16393 18.135 1.1927 1 53367 4345 33201 33219 61630 61630 0.04112084279881856 VYVTILTEYK 10 Unmodified _VYVTILTEYK_ 0 0 0 L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|50|3|sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|50|3|sense L1ME1_dup19097|chr10:14914955-14916462:+|1.5321427213523886|0.0705443030523154|4.44|151.0|50|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 410.2316589355469 3 410.232307 1227.67509 -0.41263 -0.00016927 -1.0079 -0.00041348 -1.4205 -0.00058275 410.2318730909572 104.69 0.2912 108.22 108.15 108.44 3.5289 75 44 3 0 0 0 0.56072 1 25442 25442 3.3196 3.3196 1 18841000 53368 12274 33202 33220 61631 61631 0.0703600765154988 VYVTKWLL 8 Unmodified _VYVTKWLL_ 0 0 0 REV__L1MB8_dup3849|chr4:76122606-76123234:+|1.8682141995036792|0.2487029172647672|2.91|151.0|11|2|sense REV__L1MB8_dup3849|chr4:76122606-76123234:+|1.8682141995036792|0.2487029172647672|2.91|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 511.3061218261719 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 68.833 1 68.833 68.333 69.333 0 0 0 0 0.36705 1 15738 15738 18.135 1.1927 1 + 53369 26410 33203 33221 61632 61632 0.09132709350694768 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 496.7637634277344 2 496.763635 991.512717 0.17629 8.7576E-05 0.24851 0.00012345 0.42481 0.00021103 496.7636727263167 49.548 0.99253 53.073 52.675 53.668 3.5246 184 66 4 0 0 0 0.0061262 3 10038 9998;10038;10161 146.01 109.96 1 1283400 53370 4484 33204 33222 61633;61634;61635 61634 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 496.2716979980469 2 496.763635 991.512717 0.17369 8.6283E-05 -0.30277 -0.00015041 -0.12908 -6.4124E-05 496.7633303716717 49.159 0.064167 52.683 52.641 52.705 3.5239 10 5 3 0 0 0 0.10341 1 9901 9901 16.942 1.0951 1 60864 53371 4484 33204 33222 61636 61636 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 496.7637023925781 2 496.763635 991.512717 0.21933 0.00010896 0.24097 0.0001197 0.4603 0.00022866 496.76365477663626 49.29 0.9845 53.008 52.598 53.583 3.7175 181 63 4 0 0 0 0.012548 3 9934 9934;9974;10103 137.59 99.434 1 1354300 53372 4484 33204 33222 61637;61638;61639 61637 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 496.7641296386719 2 496.763635 991.512717 0.24802 0.00012321 -0.66182 -0.00032877 -0.4138 -0.00020556 496.76317088379335 50.264 0.11691 53.958 53.877 53.994 3.6946 9 5 2 0 0 0 0.40174 1 10252 10252 7.9102 0 1 55814 53373 4484 33204 33222 61640 61640 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 496.7637023925781 2 496.763635 991.512717 0.15345 7.6226E-05 0.31291 0.00015544 0.46636 0.00023167 496.7637012286177 49.488 0.90833 53.117 52.741 53.65 3.6291 187 61 4 0 0 0 9.1124E-07 3 9922 9922;9960;10055 161.89 113.55 1 1315000 53374 4484 33204 33222 61641;61642;61643 61641 0.01662088760087954 VYVVPPPA 8 Unmodified _VYVVPPPA_ 0 0 0 EFS|p.T153Hfs*12|1|0.14|ENSG00000100842|chr14:23360021-23360022|-/G|frameshift_variant;nc|ENSG00000100842|O43281-3|EFS;nc|ENSG00000100842|O43281-2|EFS;ENSG00000100842|ENST00000216733|EFS EFS|p.T153Hfs*12|1|0.14|ENSG00000100842|chr14:23360021-23360022|-/G|frameshift_variant EFS|p.T153Hfs*12|1|0.14|ENSG00000100842|chr14:23360021-23360022|-/G|frameshift_variant MSMS UPN46_class_I_Rep_3 1 421.24267578125 2 421.244547 840.47454 NaN NaN NaN NaN NaN NaN NaN 83.306 1 83.306 82.806 83.806 0 0 0 0 0.40581 1 19781 19781 2.8892 0.31174 1 53375 660 33205 33223 61644 61644 0.04792202845419524 VYVWLHLF 8 Unmodified _VYVWLHLF_ 0 0 0 REV__L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|70|1|anti-sense REV__L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_3 7 538.8020629882812 2 538.80002 1075.58549 NaN NaN NaN NaN NaN NaN NaN 62.964 1 66.473 65.973 66.973 3.5091 0 0 0 0.4032 1 14038 14038 6.3541 0 1 + 53376 27498 33206 33224 61645 61645 0.050718425535023925 VYVYLWIQ 8 Unmodified _VYVYLWIQ_ 0 0 0 REV__L1MC4_dup16726|chr11:72954726-72954930:+|1.000999736570236|0.0049821813093099|7.65|151.0|6|2|sense REV__L1MC4_dup16726|chr11:72954726-72954930:+|1.000999736570236|0.0049821813093099|7.65|151.0|6|2|sense MSMS UPN48_class_I_Rep_2 6 542.7868041992188 2 542.29731 1082.58007 NaN NaN NaN NaN NaN NaN NaN 43.279 1 47.041 46.541 47.541 3.7617 0 0 0 0.4032 1 8115 8115 6.3541 1.1234 1 + 53377 26836 33207 33225 61646 61646 0.042081189710415856 VYVYTDTY 8 Unmodified _VYVYTDTY_ 0 0 0 Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|67|2|anti-sense Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|67|2|anti-sense Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|67|2|anti-sense MSMS UPN47_class_I_Rep_1 2 512.2373657226562 2 512.237116 1022.45968 NaN NaN NaN NaN NaN NaN NaN 62.58 1 65.94 65.44 66.44 3.3595 0 0 0 0.4032 1 14753 14753 6.3541 0 1 53378 496 33208 33226 61647 61647 -0.050653338132406134 VYVYVWLF 8 Unmodified _VYVYVWLF_ 0 0 0 REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|141|1|anti-sense REV__L1MA4_dup5539|chr9:111770009-111773218:-|1.2936134995205475|0.1001437751111714|3.69|150.0|141|1|anti-sense MSMS UPN48_class_I_Rep_2 6 544.7938232421875 2 544.794404 1087.57425 NaN NaN NaN NaN NaN NaN NaN 113.93 1 117.59 117.09 118.09 3.663 0 0 0 0.40738 1 27208 27208 0.79363 0 1 + 53379 25186 33209 33227 61648 61648 0.03397020459374289 VYWLFHFF 8 Unmodified _VYWLFHFF_ 0 0 0 L1ME3G_dup5354|chr5:138355955-138356532:-|1.651793721668094|0.0589201069439213|4.81|151.0|45|3|anti-sense L1ME3G_dup5354|chr5:138355955-138356532:-|1.651793721668094|0.0589201069439213|4.81|151.0|45|3|anti-sense L1ME3G_dup5354|chr5:138355955-138356532:-|1.651793721668094|0.0589201069439213|4.81|151.0|45|3|anti-sense MSMS UPN46_class_I_Rep_3 1 579.7921752929688 2 579.792195 1157.56984 NaN NaN NaN NaN NaN NaN NaN 78.906 1 78.906 78.406 79.406 0 0 0 0 0.40738 1 18507 18507 0.79363 0 1 53380 12843 33210 33228 61649 61649 -0.0026444396355600475 VYWRLWKE 8 Unmodified _VYWRLWKE_ 0 0 0 REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF MSMS UPN46_class_I_Rep_3 1 590.3198852539062 2 590.319109 1178.62366 NaN NaN NaN NaN NaN NaN NaN 92.725 1 92.725 92.225 93.225 0 0 0 0 0.40738 1 22452 22452 0.79363 0.19213 1 + 53381 23124 33211 33229 61650 61650 0.04149728468155445 VYYAHGHI 8 Unmodified _VYYAHGHI_ 0 0 0 L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|100|3|anti-sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|100|3|anti-sense L1PA13_dup5282|chrX:79288009-79290038:+|1.2503119037881556|0.0049995256681987|7.97|150.0|100|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.2402648925781 2 480.240327 958.466101 -0.38308 -0.00018397 0.7306 0.00035087 0.34753 0.0001669 480.2404813324554 12.825 0.11801 16.275 16.233 16.351 3.45 12 9 2 0 0 0 0.82752 1 168 168 2.8892 0 1 23557 53382 13769 33212 33230 61651 61651 -0.01479351071191104 VYYFLLCLF 9 Unmodified _VYYFLLCLF_ 0 0 0 L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|174|3|anti-sense L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|174|3|anti-sense L1PA7_dup9590|chr11:10466278-10469757:+|1.2757844877324882|0.0811701573028869|3.97|151.0|174|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 590.8092041015625 2 590.809196 1179.60384 0.48046 0.00028386 -0.28109 -0.00016607 0.19937 0.00011779 590.8090077705137 53.567 0.92709 56.762 56.426 57.353 3.1948 89 55 2 0 0 0 0.48414 1 12264 12264 2.3027 0 1 160540 53383 14916 33213 33231 61652 61652 0.02122216413181377 VYYGYNHRV 9 Unmodified _VYYGYNHRV_ 0 0 0 REV__LTR49-int_dup1304|chr10:915851-916413:+|2.2489726524250773|0.0867687756021742|4.7|151.0|4|1|sense REV__LTR49-int_dup1304|chr10:915851-916413:+|2.2489726524250773|0.0867687756021742|4.7|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 585.7904663085938 2 585.788173 1169.56179 NaN NaN NaN NaN NaN NaN NaN 36.536 1 40.205 39.705 40.705 3.6692 0 0 0 0.39428 1 6830 6830 2.0598 0 1 + 53384 30944 33214 33232 61653 61653 -0.016206229509634795 VYYHEISNFQR 11 Unmodified _VYYHEISNFQR_ 0 0 0 HAL1_dup305|chr1:43779380-43780950:-|2.8324224047288515|0.021934883923848|7.01|150.0|47|3|sense HAL1_dup305|chr1:43779380-43780950:-|2.8324224047288515|0.021934883923848|7.01|150.0|47|3|sense HAL1_dup305|chr1:43779380-43780950:-|2.8324224047288515|0.021934883923848|7.01|150.0|47|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 485.57147216796875 3 485.905364 1454.69426 -0.16027 -7.7874E-05 -1.3248 -0.00064372 -1.485 -0.00072159 485.90508369759345 33.793 0.21632 37.233 37.157 37.373 3.4398 14 12 2 0 0 0 22.551 1 6047 6047 1.1098 0.41209 1 55602 53385 7877 33215 33233 61654 61654 -0.014896430048338516 VYYIGYIFT 9 Unmodified _VYYIGYIFT_ 0 0 0 REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|56|1|anti-sense REV__L1MB1_dup51|chr1:50783880-50785076:+|1.112106143248168|0.0348731446320804|5.0|151.0|56|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 569.3903198242188 2 569.794601 1137.57465 0.40366 0.00023 -3.3592 -0.001914 -2.9555 -0.001684 570.2929626057787 52.88 0.032448 52.88 52.854 52.887 0 4 2 2 0 0 0 0.12444 1 11332 11332 2.0598 0.57785 1 61615 + 53386 25681 33216 33234 61655 61655 0.011363953885620504 VYYIILHP 8 Unmodified _VYYIILHP_ 0 0 0 REV__ENST00000272067.10_2_2:272273-275200:+|nuORF REV__ENST00000272067.10_2_2:272273-275200:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 508.78656005859375 2 509.292028 1016.5695 -0.074992 -3.8193E-05 4.1546 0.0021159 4.0796 0.0020777 509.79451160943023 24.033 0.049091 24.033 24.01 24.059 0 6 4 2 0 0 0 0.72333 1 3104 3104 0.79363 0 1 26100 + 53387 21608 33217 33235 61656 61656 0.06188136316620785 VYYIRKRV 8 Unmodified _VYYIRKRV_ 0 0 0 L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|255|2|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|255|2|anti-sense L1PA11_dup1605|chr6:100737234-100743383:-|2.116603786419757|0.0534637940440065|5.31|151.0|255|2|anti-sense MSMS UPN47_class_I_Rep_2 3 548.8350830078125 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 116.45 1 119.94 119.44 120.44 3.4965 0 0 0 0.40738 1 28429 28429 0.79363 0 1 53388 13646 33218 33236 61657 61657 0.11129721222141598 VYYLFSERL 9 Unmodified _VYYLFSERL_ 0 0 0 ENST00000521663.1_1_8:58192902-58193274:+|nuORF ENST00000521663.1_1_8:58192902-58193274:+|nuORF ENST00000521663.1_1_8:58192902-58193274:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 595.3164672851562 2 595.316232 1188.61791 0.55453 0.00033012 0.017661 1.0514E-05 0.57219 0.00034064 595.3162717334071 60.478 0.45214 63.956 63.681 64.133 3.4785 71 39 3 0 0 0 0.091581 1 13386 13386 22.736 3.4793 1 173810 53389 7236 33219 33237 61658 61658 0.031145851658493484 VYYLQRKY 8 Unmodified _VYYLQRKY_ 0 0 0 REV__HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|126|3|sense REV__HERVL-int_dup2058|chr14:71459860-71464360:-|4.980164232234113|0.054531555689961|6.51|151.0|126|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 567.2435913085938 2 566.811116 1131.60768 0.45623 0.0002586 0.13959 7.9123E-05 0.59583 0.00033772 566.8112085966435 73.191 0.17523 76.672 76.571 76.746 3.4812 22 14 2 0 0 0 0.72333 1 17244 17244 2.5775 0 1 66239 + 53390 23877 33220 33238 61659 61659 0.04714022231291892 VYYRPIVA 8 Unmodified _VYYRPIVA_ 0 0 0 REV__L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|70|3|sense REV__L1MA2_dup5453|chr11:28257027-28259923:-|1.1678330259986087|0.0487685611182024|4.58|149.0|70|3|sense MSMS UPN47_class_I_Rep_2 3 490.3161926269531 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 72.621 1 75.918 75.418 76.418 3.2971 0 0 0 0.40738 1 17811 17811 0.79363 0 1 + 53391 24774 33221 33239 61660 61660 0.05850965656793505 VYYRQIFK 8 Unmodified _VYYRQIFK_ 0 0 0 L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|26|1|sense L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|26|1|sense L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|26|1|sense MSMS UPN48_class_I_Rep_1 5 558.8135986328125 2 558.813659 1115.61277 NaN NaN NaN NaN NaN NaN NaN 67.889 1 71.341 70.841 71.841 3.4517 0 0 0 0.40625 1 15638 15638 2.3027 0 1 53392 8726 33222 33240 61661 61661 0.05958326093877986 WAARQRGF 8 Unmodified _WAARQRGF_ 0 0 0 SVA_D_dup1175|chr16:47180353-47182198:+|1.4893746077257617|0.1004229804959602|3.89|151.0|81|3|anti-sense SVA_D_dup1175|chr16:47180353-47182198:+|1.4893746077257617|0.1004229804959602|3.89|151.0|81|3|anti-sense SVA_D_dup1175|chr16:47180353-47182198:+|1.4893746077257617|0.1004229804959602|3.89|151.0|81|3|anti-sense MSMS UPN47_class_I_Rep_2 3 496.2644348144531 2 496.264668 990.514782 NaN NaN NaN NaN NaN NaN NaN 55.785 1 59.095 58.595 59.595 3.3102 0 0 0 0.40625 1 12718 12718 2.3027 0 1 53393 32850 33223 33241 61662 61662 0.019145622885730518 WAASPLYV 8 Unmodified _WAASPLYV_ 0 0 0 REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 453.73968505859375 2 453.739628 905.464704 0.018533 8.4092E-06 0.43618 0.00019791 0.45471 0.00020632 453.73977382234136 104.7 0.22156 108.32 108.13 108.35 3.6247 48 30 2 0 0 0 0.82752 1 25221 25221 2.5775 0 1 3952700 + 53394 22169 33224 33242 61663 61663 0.008190148400558428 WACSISWCIY 10 Unmodified _WACSISWCIY_ 0 0 0 L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|31|1|anti-sense L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|31|1|anti-sense L1PA15_dup21|chr1:21104362-21105140:+|1.324014604374787|0.0063396514382173|7.71|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 616.2691040039062 2 616.26737 1230.52019 NaN NaN NaN NaN NaN NaN NaN 59.481 1 62.646 62.146 63.146 3.1651 0 0 0 0.53105 1 13899 13899 1.6526 0 1 53395 13890 33225 33243 61664 61664 -0.08585263026157008 WACYREKF 8 Unmodified _WACYREKF_ 0 0 0 REV__LTR5B_dup343|chr19:11889618-11890605:-|3.1131087178465444|0.0879464445199657|5.15|151.0|42|2|anti-sense REV__LTR5B_dup343|chr19:11889618-11890605:-|3.1131087178465444|0.0879464445199657|5.15|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 551.7598876953125 2 551.760569 1101.50659 NaN NaN NaN NaN NaN NaN NaN 86.255 1 89.626 89.126 90.126 3.3716 0 0 0 0.40625 1 21619 21619 2.3027 0.24298 1 + 53396 30983 33226 33244 61665 61665 -0.04010752743079138 WADFQFIFY 9 Unmodified _WADFQFIFY_ 0 0 0 REV__L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|48|1|anti-sense REV__L1ME3D_dup3799|chr18:13044077-13045175:-|1.0648980385685625|0.0577932511497262|4.2|149.0|48|1|anti-sense MSMS UPN46_class_I_Rep_3 1 412.87139892578125 3 412.862325 1235.56515 NaN NaN NaN NaN NaN NaN NaN 17.288 1 17.288 16.788 17.788 0 0 0 0 0.40038 1 1339 1339 0.26902 0 1 + 53397 28148 33227 33245 61666 61666 -0.043213728969476506 WAETMVFF 8 Unmodified _WAETMVFF_ 0 0 0 L1PA11_dup840|chr3:158242059-158246062:-|1.630919204443825|0.0240427203077966|6.08|151.0|201|2|anti-sense L1PA11_dup840|chr3:158242059-158246062:-|1.630919204443825|0.0240427203077966|6.08|151.0|201|2|anti-sense L1PA11_dup840|chr3:158242059-158246062:-|1.630919204443825|0.0240427203077966|6.08|151.0|201|2|anti-sense MSMS UPN48_class_I_Rep_1 5 515.7697143554688 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 33.462 1 36.982 36.482 37.482 3.5201 0 0 0 0.40738 1 5223 5223 0.79363 0 1 53398 13699 33228 33246 61667 61667 -0.05056362240202361 WAFFEYPA 8 Unmodified _WAFFEYPA_ 0 0 0 ENST00000575812.1_1_16:3358749-3362115:+|nuORF ENST00000575812.1_1_16:3358749-3362115:+|nuORF ENST00000575812.1_1_16:3358749-3362115:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 516.23779296875 2 515.737086 1029.45962 -0.37637 -0.00019411 0.87405 0.00045078 0.49768 0.00025667 515.7384669296329 28.046 0.10059 31.38 31.346 31.447 3.3337 10 7 2 0 0 0 0.72333 1 4360 4360 0 0 1 25593 53399 7529 33229 33247 61668 61668 -0.053932890225723895 WAFFHVFW 8 Unmodified _WAFFHVFW_ 0 0 0 L1PA11_dup467|chr2:143238078-143239201:+|1.6335956783562|0.0114007774292|7.16|151.0|50|1|anti-sense L1PA11_dup467|chr2:143238078-143239201:+|1.6335956783562|0.0114007774292|7.16|151.0|50|1|anti-sense L1PA11_dup467|chr2:143238078-143239201:+|1.6335956783562|0.0114007774292|7.16|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 569.7891235351562 2 570.276712 1138.53887 NaN NaN NaN NaN NaN NaN NaN 30.583 1 34.298 33.798 34.798 3.7146 0 0 0 0.40738 1 4428 4428 0.79363 0 1 53400 13688 33230 33248 61669 61669 -0.024855972777686475 WAFLFLQK 8 Unmodified _WAFLFLQK_ 0 0 0 L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|143|2|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|143|2|anti-sense L1MB2_dup8278|chr19:29995082-29997762:-|1.5777800259631864|0.0422590979961871|5.22|151.0|143|2|anti-sense MSMS UPN48_class_I_Rep_1 5 526.7994384765625 2 526.80002 1051.58549 NaN NaN NaN NaN NaN NaN NaN 28.453 1 32.01 31.51 32.51 3.5571 0 0 0 0.40738 1 3810 3810 0.79363 0 1 53401 10303 33231 33249 61670 61670 0.06175842553489019 WAGPPARR 8 Unmodified _WAGPPARR_ 0 0 0 REV__nc|ENSG00000284730|P0DPE3|TMDD1 REV__nc|ENSG00000284730|P0DPE3|TMDD1 MSMS UPN47_class_I_Rep_1 2 455.7519836425781 2 455.753936 909.493319 NaN NaN NaN NaN NaN NaN NaN 119.79 1 123.4 122.9 123.9 3.6036 0 0 0 0.40738 1 29781 29781 0.79363 0 1 + 53402 32128 33232 33250 61671 61671 0.03495177259844695 WAGPPARR 8 Unmodified _WAGPPARR_ 0 0 0 REV__nc|ENSG00000284730|P0DPE3|TMDD1 REV__nc|ENSG00000284730|P0DPE3|TMDD1 MSMS UPN48_class_I_Rep_1 5 455.7764587402344 2 455.753936 909.493319 NaN NaN NaN NaN NaN NaN NaN 116.51 1 120.13 119.63 120.63 3.6254 0 0 0 0.40738 1 28373 28373 0.79363 0 1 + 53403 32128 33232 33250 61672 61672 0.03495177259844695 WAGPPQRP 8 Unmodified _WAGPPQRP_ 0 0 0 REV__ERVL-E-int_dup5534|chr10:822719-822846:+|1.0063547828035706|0.2459538775165278|2.03|151.0|7|3|sense REV__ERVL-E-int_dup5534|chr10:822719-822846:+|1.0063547828035706|0.2459538775165278|2.03|151.0|7|3|sense MSMS UPN48_class_I_Rep_1 5 454.7398986816406 2 454.740494 907.466435 NaN NaN NaN NaN NaN NaN NaN 100.29 1 103.9 103.4 104.4 3.6084 0 0 0 0.40738 1 24226 24226 0.79363 0 1 + 53404 23288 33233 33251 61673 61673 0.00900068648661545 WAGRAVLH 8 Unmodified _WAGRAVLH_ 0 0 0 MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|42|2|anti-sense MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|42|2|anti-sense MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 455.2575378417969 2 455.256311 908.49807 NaN NaN NaN NaN NaN NaN NaN 53.88 1 57.394 56.894 57.894 3.5143 0 0 0 0.40738 1 11353 11353 0.79363 0 1 53405 16111 33234 33252 61674 61674 0.04016061402614923 WAHLFVDI 8 Unmodified _WAHLFVDI_ 0 0 0 REV__ENSG00000177239|ENST00000371589|MAN1B1 REV__ENSG00000177239|ENST00000371589|MAN1B1 MSMS UPN46_class_I_Rep_3 1 500.7663269042969 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 67.336 1 67.336 66.836 67.836 0 0 0 0 0.40738 1 15324 15324 0.79363 0 1 + 53406 20614 33235 33253 61675 61675 0.018023926227101583 WAHLLDLL 8 Unmodified _WAHLLDLL_ 0 0 0 HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense MSMS UPN47_class_I_Rep_3 4 490.78289794921875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.61 1 115.13 114.63 115.63 3.5207 0 0 0 0.40738 1 27402 27402 0.79363 0 1 53407 8296 33236 33254 61676 61676 0.05850965656816243 WAHLLDLL 8 Unmodified _WAHLLDLL_ 0 0 0 HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense HERVK22-int_dup58|chr2:231093121-231096070:-|1.578962485304997|0.0745641184142255|4.4|151.0|90|3|sense MSMS UPN48_class_I_Rep_2 6 490.7817077636719 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.92 1 115.58 115.08 116.08 3.6666 0 0 0 0.40746 1 26637 26637 0.69038 0 1 53408 8296 33236 33254 61677 61677 0.05850965656816243 WAHLRPRP 8 Unmodified _WAHLRPRP_ 0 0 0 ENST00000329146.8_1_14:105946005-105946200:+|nuORF ENST00000329146.8_1_14:105946005-105946200:+|nuORF ENST00000329146.8_1_14:105946005-105946200:+|nuORF MSMS UPN47_class_I_Rep_2 3 516.7979125976562 2 516.796135 1031.57772 NaN NaN NaN NaN NaN NaN NaN 113.65 1 117.16 116.66 117.66 3.5109 0 0 0 0.40738 1 27651 27651 0.79363 0.10326 1 53409 6178 33237 33255 61678 61678 0.06319128076597735 WAHLRPRP 8 Unmodified _WAHLRPRP_ 0 0 0 ENST00000329146.8_1_14:105946005-105946200:+|nuORF ENST00000329146.8_1_14:105946005-105946200:+|nuORF ENST00000329146.8_1_14:105946005-105946200:+|nuORF MSMS UPN48_class_I_Rep_3 7 516.7971801757812 2 516.796135 1031.57772 NaN NaN NaN NaN NaN NaN NaN 111.2 1 114.86 114.36 115.36 3.6654 0 0 0 0.40738 1 26384 26384 0.79363 0.10326 1 53410 6178 33237 33255 61679 61679 0.06319128076597735 WAHWGQAWPGL 11 Unmodified _WAHWGQAWPGL_ 0 0 0 REV__L1MA4A_dup2043|chr5:102981995-102983163:+|1.2380618413068838|0.3920467995735046|1.66|151.0|74|3|anti-sense REV__L1MA4A_dup2043|chr5:102981995-102983163:+|1.2380618413068838|0.3920467995735046|1.66|151.0|74|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.8796691894531 3 436.880602 1307.61998 0.1507 6.5839E-05 -1.6036 -0.00070059 -1.4529 -0.00063475 436.87930237752767 98.38 0.1916 102.17 102.03 102.22 3.7926 38 24 2 0 0 0 0.68024 1 24361 24361 0.50596 0.23694 1 61589 + 53411 25241 33238 33256 61680 61680 -0.021529413056896374 WAILFHWL 8 Unmodified _WAILFHWL_ 0 0 0 L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|91|3|anti-sense L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|91|3|anti-sense L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|91|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.3021240234375 2 543.300188 1084.58582 NaN NaN NaN NaN NaN NaN NaN 55.341 1 58.651 58.151 59.151 3.3102 0 0 0 0.40581 1 12583 12583 2.8892 0 1 53412 15413 33239 33257 61681 61681 0.046912622733543685 WAILFHWL 8 Unmodified _WAILFHWL_ 0 0 0 L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|91|3|anti-sense L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|91|3|anti-sense L1PREC2_dup1186|chr3:37389496-37391146:-|1.3542943023621798|0.1056099766220812|3.68|151.0|91|3|anti-sense MSMS UPN47_class_I_Rep_3 4 543.3013916015625 2 543.300188 1084.58582 NaN NaN NaN NaN NaN NaN NaN 55.146 1 58.324 57.824 58.824 3.1779 0 0 0 0.40581 1 12579 12579 2.8892 0 1 53413 15413 33239 33257 61682 61682 0.046912622733543685 WAKDLNIY 8 Unmodified _WAKDLNIY_ 0 0 0 L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|7|1|sense;L1MB3_dup6772|chr7:73456076-73456659:+|1.8193491499901893|0.1012103953123775|4.17|151.0|13|2|sense L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|7|1|sense L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 511.8011474609375 2 511.768917 1021.52328 NaN NaN NaN NaN NaN NaN NaN 26.914 1 30.477 29.977 30.977 3.5629 0 0 0 0.40798 1 3382 3382 0 0 1 53414 10444 33240 33258 61683 61683 0.013380714144886952 WAKNWKLA 8 Unmodified _WAKNWKLA_ 0 0 0 REV__Tigger1_dup2056|chr3:15726050-15727294:+|2.347606817408647|0.1058949576206702|4.47|151.0|33|3|sense REV__Tigger1_dup2056|chr3:15726050-15727294:+|2.347606817408647|0.1058949576206702|4.47|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 508.7872619628906 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 29.033 1 29.033 28.533 29.533 0 0 0 0 0.40738 1 4544 4544 0.79363 0 1 + 53415 32391 33241 33259 61684 61684 0.05317787750925618 WAKPRVPL 8 Unmodified _WAKPRVPL_ 0 0 0 THE1C-int_dup37|chr1:93287691-93288731:+|1.8420335051633685|0.0773083610979647|4.57|151.0|16|2|sense THE1C-int_dup37|chr1:93287691-93288731:+|1.8420335051633685|0.0773083610979647|4.57|151.0|16|2|sense THE1C-int_dup37|chr1:93287691-93288731:+|1.8420335051633685|0.0773083610979647|4.57|151.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 483.7965393066406 2 483.797812 965.581071 NaN NaN NaN NaN NaN NaN NaN 77.94 1 81.562 81.062 82.062 3.6222 0 0 0 0.40604 1 18476 18476 2.5775 0 1 53416 32941 33242 33260 61685 61685 0.09690378130596855 WALAVSYRTV 10 Unmodified _WALAVSYRTV_ 0 0 0 REV__nc|ENSG00000116106|P54764-2|EPHA4 REV__nc|ENSG00000116106|P54764-2|EPHA4 MSMS UPN47_class_I_Rep_1 2 583.3209838867188 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 46.187 1 49.887 49.387 50.387 3.6999 0 0 0 0.53105 1 9773 9773 2.9952 0 1 + 53417 18595 33243 33261 61686 61686 0.05341407259970765 WALFLIPY 8 Unmodified _WALFLIPY_ 0 0 0 L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|139|3|anti-sense L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|139|3|anti-sense L1PA6_dup1984|chr5:69692774-69695161:-|1.8176358192662383|0.0652994783949457|4.8|150.0|139|3|anti-sense MSMS UPN46_class_I_Rep_3 1 511.7884521484375 2 511.789121 1021.56369 NaN NaN NaN NaN NaN NaN NaN 31.232 1 31.232 30.732 31.732 0 0 0 0 0.40581 1 5191 5191 2.8892 0 1 53418 14578 33244 33262 61687 61687 0.0537703780494212 WALFWLQI 8 Unmodified _WALFWLQI_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|240|1|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|240|1|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|240|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 538.7998657226562 2 538.80002 1075.58549 0.43626 0.00023506 0.76856 0.0004141 1.2048 0.00064916 538.8000868987507 81.464 0.13274 84.951 84.894 85.026 3.4874 22 15 2 0 0 0 0.82752 1 20343 20343 9.3474 0 1 78162 53419 13835 33245 33263 61688 61688 0.050718425535023925 WALFWLQI 8 Unmodified _WALFWLQI_ 0 0 0 L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|240|1|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|240|1|anti-sense L1PA14_dup2380|chr11:88257202-88263865:-|3.215223292510355|0.0967266165627432|5.05|151.0|240|1|anti-sense MSMS UPN47_class_I_Rep_2 3 538.7998657226562 2 538.80002 1075.58549 NaN NaN NaN NaN NaN NaN NaN 81.55 1 84.934 84.434 85.434 3.3839 0 0 0 0.36148 1 20312 20312 19.439 0 1 53420 13835 33245 33263 61689 61689 0.050718425535023925 WALGYEAELL 10 Unmodified _WALGYEAELL_ 0 0 0 REV__L1MCb_dup339|chr3:25747628-25748542:+|3.4312607016250003|0.2121752120994932|4.02|151.0|27|3|sense REV__L1MCb_dup339|chr3:25747628-25748542:+|3.4312607016250003|0.2121752120994932|4.02|151.0|27|3|sense MSMS UPN47_class_I_Rep_3 4 582.8027954101562 2 582.800414 1163.58628 NaN NaN NaN NaN NaN NaN NaN 34.817 1 38.08 37.58 38.58 3.2639 0 0 0 0.53105 1 6375 6375 1.8442 0.19162 1 + 53421 27237 33246 33264 61690 61690 0.011025924118939656 WALHIHHFY 9 Unmodified _WALHIHHFY_ 0 0 0 REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|124|2|anti-sense REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|124|2|anti-sense MSMS UPN47_class_I_Rep_1 2 612.3087158203125 2 612.309075 1222.6036 NaN NaN NaN NaN NaN NaN NaN 59.468 1 62.866 62.366 63.366 3.3982 0 0 0 0.39326 1 13811 13811 2.3027 0 1 + 53422 27937 33247 33265 61691 61691 0.0011997752822026087 WALHLLRW 8 Unmodified _WALHLLRW_ 0 0 0 REV__L1MB8_dup13717|chr16:16092266-16092687:-|1.1357439358895265|0.0059024419217813|7.59|151.0|30|3|anti-sense REV__L1MB8_dup13717|chr16:16092266-16092687:-|1.1357439358895265|0.0059024419217813|7.59|151.0|30|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.8163452148438 2 547.816536 1093.61852 NaN NaN NaN NaN NaN NaN NaN 118.89 1 122.47 121.97 122.97 3.5847 0 0 0 0.40738 1 28267 28267 0.79363 0 1 + 53423 26370 33248 33266 61692 61692 0.0754546939622287 WALIKSFC 8 Unmodified _WALIKSFC_ 0 0 0 L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|48|1|sense L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|48|1|sense L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|48|1|sense MSMS UPN47_class_I_Rep_3 4 484.25799560546875 2 484.257131 966.499709 NaN NaN NaN NaN NaN NaN NaN 19.876 1 23.227 22.727 23.727 3.3514 0 0 0 0.40625 1 1943 1943 2.3027 0.65011 1 53424 14847 33249 33267 61693 61693 0.015119343763444704 WALRFTGTTGA 11 Unmodified _WALRFTGTTGA_ 0 0 0 REV__AluJo_dup50559|chr12:57390416-57390716:+|1.0084737206068737|0.0067206555156175|7.23|151.0|12|1|anti-sense REV__AluJo_dup50559|chr12:57390416-57390716:+|1.0084737206068737|0.0067206555156175|7.23|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 590.8095703125 2 590.809105 1179.60366 0.51653 0.00030517 -0.20171 -0.00011917 0.31483 0.000186 590.808877415625 53.367 0.75228 56.693 56.38 57.132 3.3266 73 48 2 0 0 0 0.35213 1 11958 11958 11.495 2.1116 1 144540 + 53425 17004 33250 33268 61694 61694 0.021039327375547145 WALRFTGTTGA 11 Unmodified _WALRFTGTTGA_ 0 0 0 REV__AluJo_dup50559|chr12:57390416-57390716:+|1.0084737206068737|0.0067206555156175|7.23|151.0|12|1|anti-sense REV__AluJo_dup50559|chr12:57390416-57390716:+|1.0084737206068737|0.0067206555156175|7.23|151.0|12|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 590.8092041015625 2 590.809105 1179.60366 0.48046 0.00028386 -0.12629 -7.4611E-05 0.35418 0.00020925 590.8090077705137 53.567 0.92709 56.762 56.426 57.353 3.1948 89 55 2 0 0 0 0.50573 1 12112 12112 7.609 0.88579 1 160540 + 53426 17004 33250 33268 61695 61695 0.021039327375547145 WALSRHIT 8 Unmodified _WALSRHIT_ 0 0 0 ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-3|TAS1R1 ENSG00000173662|ENST00000333172|TAS1R1 ENSG00000173662|ENST00000333172|TAS1R1 MSMS UPN47_class_I_Rep_3 4 492.2740173339844 2 492.274701 982.534849 NaN NaN NaN NaN NaN NaN NaN 35.096 1 38.36 37.86 38.86 3.2639 0 0 0 0.40738 1 6459 6459 0.79363 0 1 53427 4642 33251 33269 61696 61696 0.04288313228505558 WALTCHCQ 8 Unmodified _WALTCHCQ_ 0 0 0 REV__AluJr4_dup13316|chr11:117094336-117094631:+|1.8816611067457043|0.0084546731292025|7.8|151.0|3|1|sense REV__AluJr4_dup13316|chr11:117094336-117094631:+|1.8816611067457043|0.0084546731292025|7.8|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 481.20379638671875 2 481.204573 960.394592 NaN NaN NaN NaN NaN NaN NaN 119.54 1 123.14 122.64 123.64 3.6036 0 0 0 0.40746 1 29709 29709 0.69038 0 1 + 53428 17071 33252 33270 61697 61697 -0.08718930091720267 WALVELIL 8 Unmodified _WALVELIL_ 0 0 0 REV__nc|ENSG00000274150|A8MWK0|FADS2B REV__nc|ENSG00000274150|A8MWK0|FADS2B MSMS UPN48_class_I_Rep_1 5 478.79547119140625 2 478.794404 955.574254 NaN NaN NaN NaN NaN NaN NaN 30.139 1 33.681 33.181 34.181 3.542 0 0 0 0.40738 1 4286 4286 0.79363 0 1 + 53429 32122 33253 33271 61698 61698 0.09469020459391686 WALYTYED 8 Unmodified _WALYTYED_ 0 0 0 nc|ENSG00000113758|Q16643|DBN1;ENSG00000113758|ENST00000393565|DBN1 nc|ENSG00000113758|Q16643|DBN1 nc|ENSG00000113758|Q16643|DBN1 MSMS UPN46_class_I_Rep_3 1 530.291259765625 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 27.172 1 27.172 26.672 27.672 0 0 0 0 0.40738 1 3996 3996 0.79363 0 1 53430 2058 33254 33272 61699 61699 -0.07242217955990782 WAMPCPQR 8 Unmodified _WAMPCPQR_ 0 0 0 L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|312|2|anti-sense L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|312|2|anti-sense L1PA5_dup2603|chr4:38847299-38853392:+|1.4305442267758348|0.0913102398939241|3.97|150.0|312|2|anti-sense MSMS UPN46_class_I_Rep_3 1 494.7191162109375 2 494.728215 987.441877 NaN NaN NaN NaN NaN NaN NaN 118.08 1 118.08 117.58 118.58 0 0 0 0 0.40738 1 29297 29297 0.79363 0 1 53431 14454 33255 33273 61700 61700 -0.05234650820727893 WAPASSAVL 9 Unmodified _WAPASSAVL_ 0 0 0 ENST00000216122.8_1_22:35820296-35820551:+|nuORF ENST00000216122.8_1_22:35820296-35820551:+|nuORF ENST00000216122.8_1_22:35820296-35820551:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 451.241455078125 2 451.242535 900.470518 -0.70276 -0.00031711 -0.074639 -3.368E-05 -0.77739 -0.00035079 451.2424156763279 40.184 0.46395 43.421 43.203 43.667 3.2372 53 29 2 0 0 0 0.11959 1 8022 8022 7.9102 2.6795 1 48565 53432 5860 33256 33274 61701 61701 0.016301133517231392 WAPRWGRLK 9 Unmodified _WAPRWGRLK_ 0 0 0 REV__AluJb_dup36784|chr5:87366750-87367062:+|1.2876071586505955|0.3935062296431791|1.71|151.0|2|1|sense REV__AluJb_dup36784|chr5:87366750-87367062:+|1.2876071586505955|0.3935062296431791|1.71|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 585.3358154296875 2 585.338167 1168.66178 NaN NaN NaN NaN NaN NaN NaN 74.5 1 77.99 77.49 78.49 3.49 0 0 0 0.39428 1 17607 17607 2.0598 0.57785 1 + 53433 16939 33257 33275 61702 61702 0.08419659173478067 WAQLVECL 8 Unmodified _WAQLVECL_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MULTI-SECPEP UPN48_class_I_Rep_3 7 481.2618103027344 2 481.244221 960.473888 0.088508 4.2594E-05 0.78438 0.00037748 0.87289 0.00042007 481.2445955446584 52.561 0.37923 56.158 56.059 56.438 3.5979 30 26 2 0 0 0 0.72333 1 10882 10882 4.3292 1.44 1 57758 + 53434 18540 33258 33276 61703 61703 -0.007929598659416115 WAQRLSRPKLL 11 Unmodified _WAQRLSRPKLL_ 0 0 0 REV__AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|6|2|sense REV__AluJo_dup20236|chr5:39126416-39126719:+|1.1146772451023463|0.0871019752599325|3.68|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 456.7526550292969 3 456.613856 1366.81974 NaN NaN NaN NaN NaN NaN NaN 56.414 1 56.414 55.914 56.914 0 0 0 0 0.38417 1 12303 12303 0.36667 0.22678 1 + 53435 16989 33259 33277 61704 61704 0.15100113642074575 WARIAPSL 8 Unmodified _WARIAPSL_ 0 0 0 REV__ENST00000356387.6_1_7:102079443-102079566:+|nuORF REV__ENST00000356387.6_1_7:102079443-102079566:+|nuORF MSMS UPN48_class_I_Rep_1 5 457.2643737792969 2 457.266345 912.518136 NaN NaN NaN NaN NaN NaN NaN 74.372 1 77.862 77.362 78.362 3.49 0 0 0 0.40738 1 17572 17572 0.79363 0 1 + 53436 21865 33260 33278 61705 61705 0.058378123425427475 WARRARLRL 9 Unmodified _WARRARLRL_ 0 0 0 AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|12|3|sense AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|12|3|sense AluSq2_dup26900|chr8:55915435-55915732:+|1.346455529872664|0.0095315355772966|7.14|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 599.376220703125 2 599.375615 1196.73668 NaN NaN NaN NaN NaN NaN NaN 99.438 1 99.438 98.938 99.938 0 0 0 0 0.4007 1 24224 24224 0.52476 0 1 53437 251 33261 33279 61706 61706 0.14617841704739476 WARRVRLY 8 Unmodified _WARRVRLY_ 0 0 0 REV__L1MA5A_dup2895|chr15:34280570-34281290:+|1.1376791001130933|0.0136729697216651|6.38|151.0|23|3|sense REV__L1MA5A_dup2895|chr15:34280570-34281290:+|1.1376791001130933|0.0136729697216651|6.38|151.0|23|3|sense MSMS UPN47_class_I_Rep_3 4 560.3282470703125 2 560.330342 1118.64613 NaN NaN NaN NaN NaN NaN NaN 54.308 1 57.494 56.994 57.994 3.1856 0 0 0 0.40364 1 12321 12321 5.7604 0.52976 1 + 53438 25417 33262 33280 61707 61707 0.09155372656459804 WARVACHLV 9 Unmodified _WARVACHLV_ 0 0 0 REV__ENSG00000205090|ENST00000378733|TMEM240 REV__ENSG00000205090|ENST00000378733|TMEM240 MSMS UPN47_class_I_Rep_2 3 527.78466796875 2 527.784379 1053.5542 NaN NaN NaN NaN NaN NaN NaN 25.3 1 28.783 28.283 29.283 3.483 0 0 0 0.39428 1 3491 3491 2.0598 0.21551 1 + 53439 21215 33263 33281 61708 61708 0.029569462477638808 WARVLFFTRR 10 Unmodified _WARVLFFTRR_ 0 0 0 ENST00000461408.2_1_15:59040902-59041232:-|nuORF ENST00000461408.2_1_15:59040902-59041232:-|nuORF ENST00000461408.2_1_15:59040902-59041232:-|nuORF MSMS UPN48_class_I_Rep_3 7 451.2627868652344 3 451.263046 1350.76731 NaN NaN NaN NaN NaN NaN NaN 119.73 1 123.29 122.79 123.79 3.566 0 0 0 0.53105 1 28454 28454 0.15932 0 1 53440 6860 33264 33282 61709 61709 0.1059557529911217 WASFSLYQM 9 Unmodified _WASFSLYQM_ 0 0 0 REV__L1MA9_dup4165|chr4:139935729-139936516:-|1.5199050163716454|0.0469745228262122|5.02|151.0|56|3|anti-sense REV__L1MA9_dup4165|chr4:139935729-139936516:-|1.5199050163716454|0.0469745228262122|5.02|151.0|56|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.7583618164062 2 566.760235 1131.50592 0.093415 5.2944E-05 -3.6005 -0.0020406 -3.507 -0.0019876 566.7580298588803 42.626 0.20567 45.865 45.74 45.946 3.2394 20 13 2 0 0 0 0.42249 1 8774 8774 6.7232 0.51738 1 42288 + 53441 25630 33265 33283 61710 61710 -0.05457592182801818 WASIFFTL 8 Unmodified _WASIFFTL_ 0 0 0 REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|71|1|anti-sense REV__MER83B-int_dup79|chr5:131661254-131662733:+|2.825610305254829|0.0474150462317074|5.9|151.0|71|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 493.26422119140625 2 492.763104 983.511654 0.059715 2.9425E-05 -0.59386 -0.00029263 -0.53414 -0.00026321 492.76275599841404 45.265 0.84194 48.618 48.189 49.031 3.3534 73 48 2 0 0 0 0.82752 1 9615 9615 8.5933 3.3626 1 147540 + 53442 31568 33266 33284 61711 61711 0.019238743911841993 WATGLLALLV 10 Unmodified _WATGLLALLV_ 0 0 0 REV__ENST00000569268.5_1_16:70208157-70217386:+|nuORF REV__ENST00000569268.5_1_16:70208157-70217386:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.8262329101562 2 528.826235 1055.63792 0.45635 0.00024133 -0.31592 -0.00016707 0.14042 7.4259E-05 528.8258414080949 97.615 0.16447 101.4 101.33 101.49 3.7861 29 22 2 0 0 0 0.52083 1 24184 24184 9.3831 0 1 67728 + 53443 19821 33267 33285 61712 61712 0.11232380896444738 WATKHILT 8 Unmodified _WATKHILT_ 0 0 0 L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|36|3|sense L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|36|3|sense L1MCa_dup3743|chr9:5902806-5903863:-|3.857630374607989|0.2784278494696652|3.79|151.0|36|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 485.2777404785156 2 485.279452 968.544351 0.22544 0.0001094 0.54687 0.00026538 0.77231 0.00037479 485.27740994730294 50.399 0.13779 50.399 50.331 50.469 0 30 19 3 0 0 0 0.82752 1 10652 10652 2.8892 0 1 516660 53444 11799 33268 33286 61713 61713 0.05882081514039328 WATLKQEAQY 10 Unmodified _WATLKQEAQY_ 0 0 0 REV__MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|101|3|sense REV__MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|101|3|sense MSMS UPN47_class_I_Rep_2 3 619.2323608398438 2 619.31422 1236.61389 NaN NaN NaN NaN NaN NaN NaN 68.898 1 72.168 71.668 72.668 3.2696 0 0 0 0.53105 1 16701 16701 2.7352 1.0826 1 + 53445 31299 33269 33287 61714 61714 0.005044956721349081 WATSTIKST 9 Unmodified _WATSTIKST_ 0 0 0 REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5 REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5 MSMS UPN47_class_I_Rep_2 3 497.7541198730469 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 111.68 1 115.2 114.7 115.7 3.5226 0 0 0 0.39518 1 27189 27189 1.8442 1.0506 1 + 53446 18657 33270 33288 61715 61715 0.016094636893058123 WATVGGQSTYQ 11 Unmodified _WATVGGQSTYQ_ 0 0 0 REV__ENSG00000010379|ENST00000343164|SLC6A13 REV__ENSG00000010379|ENST00000343164|SLC6A13 MULTI-MSMS UPN47_class_I_Rep_1 2 599.280517578125 2 599.280377 1196.5462 0.41165 0.00024669 -0.43957 -0.00026343 -0.027929 -1.6737E-05 599.2798372096987 58.49 0.44156 61.907 61.709 62.15 3.4171 50 28 2 0 0 0 0.67398 1 13580 13580 1.0715 0.10919 1 87901 + 53447 17570 33271 33289 61716 61716 -0.04420954258648635 WAVKAPGKT 9 Unmodified _WAVKAPGKT_ 0 0 0 REV__ENST00000560051.1_1_14:103830578-103830779:-|nuORF REV__ENST00000560051.1_1_14:103830578-103830779:-|nuORF MSMS UPN48_class_I_Rep_2 6 479.2778625488281 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 75.499 1 79.1 78.6 79.6 3.6011 0 0 0 0.37476 1 17807 17807 6.7232 1.9672 1 + 53448 23013 33272 33290 61717 61717 0.0643408151404401 WAVLHYGLA 9 Unmodified _WAVLHYGLA_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;ENSG00000179532.13,DNHD1,chr11,+,I27.1,6564805,6565694|31|7.27|2|intron;ENSG00000179532.13,DNHD1,chr11,+,I27.1,6564805,6565694|31|7.27|1|intron ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MSMS UPN48_class_I_Rep_1 5 515.2672119140625 2 515.279452 1028.54435 NaN NaN NaN NaN NaN NaN NaN 40.958 1 44.464 43.964 44.964 3.506 0 0 0 0.39326 1 7408 7408 2.3027 0.24298 1 53449 4863 33273 33291 61718 61718 0.03122081514038655 WAVPDPWVY 9 Unmodified _WAVPDPWVY_ 0 0 0 REV__ENST00000392470.6_1_3:187003724-187009056:-|nuORF REV__ENST00000392470.6_1_3:187003724-187009056:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 566.7766723632812 2 566.776742 1131.53893 0.20356 0.00011537 -1.4043 -0.00079591 -1.2007 -0.00068054 566.776620496602 44.865 1.1257 48.221 47.805 48.931 3.3556 153 69 3 0 0 0 0.46434 1 9475 9475 4.3292 0 1 219320 + 53450 21803 33274 33292 61719 61719 -0.021576420684368713 WAWAWRART 9 Unmodified _WAWAWRART_ 0 0 0 LTR12C_dup2418|chr16:67998033-67999459:+|3.393990123806926|0.3446502708260341|3.3|151.0|13|2|sense LTR12C_dup2418|chr16:67998033-67999459:+|3.393990123806926|0.3446502708260341|3.3|151.0|13|2|sense LTR12C_dup2418|chr16:67998033-67999459:+|3.393990123806926|0.3446502708260341|3.3|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 401.878173828125 3 401.877192 1202.60975 NaN NaN NaN NaN NaN NaN NaN 16.142 1 19.504 19.004 20.004 3.3619 0 0 0 0.40038 1 957 957 0.26902 0.033176 1 53451 15541 33275 33293 61720 61720 0.0165449575972616 WAWDPGWA 8 Unmodified _WAWDPGWA_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|315|1|anti-sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|315|1|anti-sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|315|1|anti-sense MSMS UPN47_class_I_Rep_3 4 494.7186279296875 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 20.935 1 24.285 23.785 24.785 3.3496 0 0 0 0.40738 1 2254 2254 0.79363 0 1 53452 15325 33276 33294 61721 61721 -0.07031326479580002 WAWPVMKVT 9 Unmodified _WAWPVMKVT_ 0 0 0 REV__L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|102|2|anti-sense REV__L1M2_dup2711|chr5:37232965-37234833:+|1.2138048025611914|0.0236544438019314|5.68|151.0|102|2|anti-sense MSMS UPN48_class_I_Rep_3 7 559.279541015625 2 559.296788 1116.57902 NaN NaN NaN NaN NaN NaN NaN 42.447 1 46.089 45.589 46.589 3.6415 0 0 0 0.39428 1 7780 7780 2.0598 0.21551 1 + 53453 24190 33277 33295 61722 61722 0.025395813304839976 WAYRLIPC 8 Unmodified _WAYRLIPC_ 0 0 0 L1PA15_dup5874|chr10:87451616-87452166:+|1.2343070411986587|0.2548608274667693|2.28|147.0|31|2|anti-sense;L1PA15_dup5873|chr10:87285808-87286358:-|1.341130846894625|0.2451671262250436|2.45|151.0|31|2|anti-sense L1PA15_dup5874|chr10:87451616-87452166:+|1.2343070411986587|0.2548608274667693|2.28|147.0|31|2|anti-sense L1PA15_dup5874|chr10:87451616-87452166:+|1.2343070411986587|0.2548608274667693|2.28|147.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 511.2701110839844 2 511.26803 1020.52151 NaN NaN NaN NaN NaN NaN NaN 50.307 1 53.65 53.15 54.15 3.3431 0 0 0 0.40604 1 11046 11046 2.5775 0.27475 1 53454 13955 33278 33296 61723 61723 0.012067391249161119 WCCCFICDD 9 Unmodified _WCCCFICDD_ 0 0 0 REV__L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|92|1|anti-sense REV__L1M2_dup4063|chr7:97893326-97895511:+|1.6601751656005272|0.1051383906889349|3.98|151.0|92|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.1741333007812 2 554.173766 1106.33298 NaN NaN NaN NaN NaN NaN NaN 119.43 1 122.85 122.35 123.35 3.4157 0 0 0 0.4029 1 29497 29497 0 0 1 + 53455 24206 33279 33297 61724 61724 -0.21593365897524563 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.1761474609375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 21.191 1 24.835 24.335 25.335 3.6436 0 0 0 0.4029 1 2261 2261 0 0 1 + 53456 30700 33280 33298 61725 61725 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.1766967773438 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 21.486 1 25.161 24.661 25.661 3.6749 0 0 0 0.4029 1 2339 2339 0 0 1 + 53457 30700 33280 33298 61726 61726 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 553.7606201171875 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 22.746 1 26.45 25.95 26.95 3.7042 0 0 0 0.4029 1 2695 2695 0 0 1 + 53458 30700 33280 33298 61727 61727 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.1758422851562 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 22.822 1 26.527 26.027 27.027 3.7042 0 0 0 0.4029 1 2718 2718 0 0 1 + 53459 30700 33280 33298 61728 61728 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.1756591796875 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 23.887 1 27.617 27.117 28.117 3.7298 0 0 0 0.4029 1 3029 3029 0 0 1 + 53460 30700 33280 33298 61729 61729 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.1763916015625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 29.34 1 33.098 32.598 33.598 3.7578 0 0 0 0.4029 1 4646 4646 0 0 1 + 53461 30700 33280 33298 61730 61730 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.175537109375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 41.65 1 45.329 44.829 45.829 3.6792 0 0 0 0.40038 1 8385 8385 0.6015 0 1 + 53462 30700 33280 33298 61731 61731 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 553.830078125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 83.349 1 86.887 86.387 87.387 3.5386 0 0 0 0.4029 1 20844 20844 0 0 1 + 53463 30700 33280 33298 61732 61732 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_1 2 554.1761474609375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 112.49 1 116.06 115.56 116.56 3.572 0 0 0 0.4029 1 27735 27735 0 0 1 + 53464 30700 33280 33298 61733 61733 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 554.1760864257812 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 22.05 1 25.474 24.974 25.974 3.4241 0 0 0 0.4029 1 2557 2557 0 0 1 + 53465 30700 33280 33298 61734 61734 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 554.1760864257812 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 26.081 1 29.575 29.075 30.075 3.4945 0 0 0 0.4029 1 3720 3720 0 0 1 + 53466 30700 33280 33298 61735 61735 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 553.7607421875 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 29.57 1 33.063 32.563 33.563 3.4923 0 0 0 0.4029 1 4754 4754 0 0 1 + 53467 30700 33280 33298 61736 61736 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 554.1756591796875 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 29.579 1 33.071 32.571 33.571 3.4923 0 0 0 0.4029 1 4757 4757 0 0 1 + 53468 30700 33280 33298 61737 61737 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 554.1761474609375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 46.062 1 49.415 48.915 49.915 3.3534 0 0 0 0.4029 1 9764 9764 0 0 1 + 53469 30700 33280 33298 61738 61738 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 17.963 1 21.321 20.821 21.821 3.3581 0 0 0 0.4029 1 1407 1407 0 0 1 + 53470 30700 33280 33298 61739 61739 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1761474609375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 19.682 1 23.034 22.534 23.534 3.3514 0 0 0 0.4029 1 1885 1885 0 0 1 + 53471 30700 33280 33298 61740 61740 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1757202148438 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 21.302 1 24.652 24.152 25.152 3.3496 0 0 0 0.4029 1 2360 2360 0 0 1 + 53472 30700 33280 33298 61741 61741 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1759033203125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 22.422 1 25.772 25.272 26.272 3.3503 0 0 0 0.40038 1 2680 2680 0.6015 0 1 + 53473 30700 33280 33298 61742 61742 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.176025390625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 22.562 1 25.912 25.412 26.412 3.3503 0 0 0 0.4029 1 2721 2721 0 0 1 + 53474 30700 33280 33298 61743 61743 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.17578125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 22.703 1 26.053 25.553 26.553 3.3503 0 0 0 0.4029 1 2761 2761 0 0 1 + 53475 30700 33280 33298 61744 61744 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.17578125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 24.454 1 27.804 27.304 28.304 3.3509 0 0 0 0.4029 1 3284 3284 0 0 1 + 53476 30700 33280 33298 61745 61745 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.17578125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 28.531 1 31.865 31.365 32.365 3.3337 0 0 0 0.40038 1 4486 4486 0.6015 0.076735 1 + 53477 30700 33280 33298 61746 61746 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.3056640625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 39.65 1 42.888 42.388 43.388 3.238 0 0 0 0.4029 1 7857 7857 0 0 1 + 53478 30700 33280 33298 61747 61747 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.17626953125 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 69.035 1 72.24 71.74 72.74 3.2044 0 0 0 0.4029 1 16811 16811 0 0 1 + 53479 30700 33280 33298 61748 61748 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 113.63 1 117.13 116.63 117.63 3.4963 0 0 0 0.4029 1 27878 27878 0 0 1 + 53480 30700 33280 33298 61749 61749 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1760864257812 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 114.07 1 117.56 117.06 118.06 3.4963 0 0 0 0.4029 1 27997 27997 0 0 1 + 53481 30700 33280 33298 61750 61750 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN47_class_I_Rep_3 4 554.1761474609375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 119.09 1 122.5 122 123 3.4157 0 0 0 0.4029 1 29400 29400 0 0 1 + 53482 30700 33280 33298 61751 61751 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 19.416 1 22.954 22.454 23.454 3.5378 0 0 0 0.4029 1 1469 1469 0 0 1 + 53483 30700 33280 33298 61752 61752 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 29.773 1 33.323 32.823 33.823 3.5499 0 0 0 0.4029 1 4187 4187 0 0 1 + 53484 30700 33280 33298 61753 61753 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 113.38 1 117.01 116.51 117.51 3.6314 0 0 0 0.4029 1 27542 27542 0 0 1 + 53485 30700 33280 33298 61754 61754 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_1 5 554.1768188476562 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 113.61 1 117.24 116.74 117.74 3.6314 0 0 0 0.4029 1 27602 27602 0 0 1 + 53486 30700 33280 33298 61755 61755 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 554.1761474609375 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 23.288 1 26.931 26.431 27.431 3.6432 0 0 0 0.4029 1 2515 2515 0 0 1 + 53487 30700 33280 33298 61756 61756 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 25.306 1 28.942 28.442 29.442 3.6363 0 0 0 0.4029 1 3064 3064 0 0 1 + 53488 30700 33280 33298 61757 61757 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 554.176025390625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 26.722 1 30.355 29.855 30.855 3.6332 0 0 0 0.4029 1 3443 3443 0 0 1 + 53489 30700 33280 33298 61758 61758 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 554.1760864257812 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 31.003 1 34.638 34.138 35.138 3.6351 0 0 0 0.4029 1 4613 4613 0 0 1 + 53490 30700 33280 33298 61759 61759 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 554.176025390625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 119.57 1 123.23 122.73 123.73 3.6652 0 0 0 0.4029 1 28696 28696 0 0 1 + 53491 30700 33280 33298 61760 61760 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 554.176025390625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 28.109 1 31.851 31.351 32.351 3.7424 0 0 0 0.4029 1 3781 3781 0 0 1 + 53492 30700 33280 33298 61761 61761 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 554.1759643554688 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 76.583 1 80.166 79.666 80.666 3.5831 0 0 0 0.4029 1 18041 18041 0 0 1 + 53493 30700 33280 33298 61762 61762 -0.2112276023576669 WCCHCHCCL 9 Unmodified _WCCHCHCCL_ 0 0 0 REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense REV__L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 554.176025390625 2 554.17612 1106.33769 NaN NaN NaN NaN NaN NaN NaN 116.41 1 120.04 119.54 120.54 3.6312 0 0 0 0.4029 1 27705 27705 0 0 1 + 53494 30700 33280 33298 61763 61763 -0.2112276023576669 WCCMCMEHR 9 Unmodified _WCCMCMEHR_ 0 0 0 REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|98|2|anti-sense REV__Tigger1_dup6552|chr8:119808226-119810076:-|1.762785662382815|0.0684478018753476|4.69|151.0|98|2|anti-sense MSMS UPN47_class_I_Rep_3 4 599.706787109375 2 599.707785 1197.40102 NaN NaN NaN NaN NaN NaN NaN 24.499 1 27.85 27.35 28.35 3.3509 0 0 0 0.40038 1 3298 3298 0.6015 0.076735 1 + 53495 32505 33281 33299 61764 61764 -0.1897881951852014 WCCNCDFRR 9 Unmodified _WCCNCDFRR_ 0 0 0 HERVL-int_dup533|chr4:2738042-2739874:+|1.9429282084970667|0.1399595838667417|3.8|151.0|58|1|anti-sense HERVL-int_dup533|chr4:2738042-2739874:+|1.9429282084970667|0.1399595838667417|3.8|151.0|58|1|anti-sense HERVL-int_dup533|chr4:2738042-2739874:+|1.9429282084970667|0.1399595838667417|3.8|151.0|58|1|anti-sense MSMS UPN47_class_I_Rep_3 4 601.73779296875 2 601.736245 1201.45794 NaN NaN NaN NaN NaN NaN NaN 41.651 1 44.888 44.388 45.388 3.2372 0 0 0 0.39518 1 8469 8469 1.8442 1.0506 1 53496 8371 33282 33300 61765 61765 -0.1347331264614695 WCDCCCDDS 9 Unmodified _WCDCCCDDS_ 0 0 0 L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense L1MEf_dup9805|chr15:57151826-57153235:+|2.594136832349723|0.0246057418232293|6.72|151.0|80|2|anti-sense MSMS UPN46_class_I_Rep_3 1 524.9466552734375 2 525.127013 1048.23947 NaN NaN NaN NaN NaN NaN NaN 76.345 1 76.345 75.845 76.845 0 0 0 0 0.4029 1 17803 17803 0 0 1 53497 13344 33283 33301 61766 61766 -0.2827171007063498 WCDWPLGEAS 10 Unmodified _WCDWPLGEAS_ 0 0 0 REV__ENST00000368487.7_1_1:154298166-154300613:+|nuORF REV__ENST00000368487.7_1_1:154298166-154300613:+|nuORF MSMS UPN47_class_I_Rep_3 4 582.2462158203125 2 582.244949 1162.47534 NaN NaN NaN NaN NaN NaN NaN 24.528 1 27.879 27.379 28.379 3.3509 0 0 0 0.53105 1 3306 3306 1.4819 0.28856 1 + 53498 21943 33284 33302 61767 61767 -0.099393705678267 WCEWHLGLE 9 Unmodified _WCEWHLGLE_ 0 0 0 ENST00000536311.5_1_20:62871939-62872287:+|nuORF ENST00000536311.5_1_20:62871939-62872287:+|nuORF ENST00000536311.5_1_20:62871939-62872287:+|nuORF MSMS UPN48_class_I_Rep_1 5 586.7640991210938 2 586.763309 1171.51206 NaN NaN NaN NaN NaN NaN NaN 27.362 1 30.925 30.425 31.425 3.5629 0 0 0 0.39518 1 3511 3511 1.8442 0 1 53499 7332 33285 33303 61768 61768 -0.06683073951239749 WCFDCDVDPSS 11 Unmodified _WCFDCDVDPSS_ 0 0 0 REV__ENST00000335565.4_2_X:144903367-144903631:+|nuORF REV__ENST00000335565.4_2_X:144903367-144903631:+|nuORF MSMS UPN48_class_I_Rep_1 5 637.2262573242188 2 637.228639 1272.44272 NaN NaN NaN NaN NaN NaN NaN 26.433 1 30 29.5 30.5 3.5667 0 0 0 0.38417 1 3245 3245 0.30703 0 1 + 53500 21793 33286 33304 61769 61769 -0.1825994575299319 WCFFFIWR 8 Unmodified _WCFFFIWR_ 0 0 0 ENST00000264405.9_1_4:83785725-83787994:-|nuORF ENST00000264405.9_1_4:83785725-83787994:-|nuORF ENST00000264405.9_1_4:83785725-83787994:-|nuORF MSMS UPN48_class_I_Rep_1 5 602.7890014648438 2 602.791672 1203.56879 NaN NaN NaN NaN NaN NaN NaN 38.771 1 42.276 41.776 42.776 3.5048 0 0 0 0.40738 1 6760 6760 0.79363 0 1 53501 5989 33287 33305 61770 61770 -0.02484981604106906 WCFLIFLA 8 Unmodified _WCFLIFLA_ 0 0 0 REV__L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|156|3|anti-sense REV__L1MEf_dup6049|chr8:129346743-129349078:+|1.1137266409233306|0.0156265672180623|6.16|150.0|156|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 506.3219299316406 2 506.769874 1011.5252 0.3036 0.00015386 -0.41932 -0.0002125 -0.11571 -5.864E-05 507.2709545035335 76.982 0.069298 80.593 80.558 80.628 3.6116 5 4 2 0 0 0 0.72333 1 18200 18200 0.79363 0 1 18686 + 53502 28670 33288 33306 61771 61771 0.01989408898759848 WCFPAWPW 8 Unmodified _WCFPAWPW_ 0 0 0 ENST00000356387.6_1_7:102087640-102088213:+|nuORF ENST00000356387.6_1_7:102087640-102088213:+|nuORF ENST00000356387.6_1_7:102087640-102088213:+|nuORF MSMS UPN47_class_I_Rep_3 4 546.7401123046875 2 546.741648 1091.46874 NaN NaN NaN NaN NaN NaN NaN 34.587 1 37.851 37.351 38.351 3.2639 0 0 0 0.40581 1 6305 6305 2.8892 0.58649 1 53503 6287 33289 33307 61772 61772 -0.0733321893790162 WCFPEYQI 8 Unmodified _WCFPEYQI_ 0 0 0 REV__L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|28|1|anti-sense REV__L1ME1_dup10552|chr5:141612101-141612740:+|1.4515216104891189|0.0126593420168409|6.84|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_1 5 543.2403564453125 2 543.241678 1084.4688 NaN NaN NaN NaN NaN NaN NaN 115.3 1 118.93 118.43 119.43 3.6282 0 0 0 0.40738 1 28047 28047 0.79363 0 1 + 53504 27561 33290 33308 61773 61773 -0.07005263728569844 WCFPLFYE 8 Unmodified _WCFPLFYE_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7468872070312 2 552.746596 1103.47864 NaN NaN NaN NaN NaN NaN NaN 37.61 1 40.998 40.498 41.498 3.3879 0 0 0 0.40604 1 7191 7191 2.5775 0 1 + 53505 25379 33291 33309 61774 61774 -0.06896075723170725 WCGLVHAML 9 Unmodified _WCGLVHAML_ 0 0 0 REV__Charlie29a_dup3|chr1:8603216-8603634:+|1.0672963741147794|0.0126219709931104|6.4|151.0|18|1|anti-sense REV__Charlie29a_dup3|chr1:8603216-8603634:+|1.0672963741147794|0.0126219709931104|6.4|151.0|18|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 515.7542114257812 2 515.254065 1028.49358 0.32875 0.00016939 -1.3903 -0.00071634 -1.0615 -0.00054695 515.2534909218265 33.879 0.16381 37.539 37.493 37.656 3.6607 17 14 2 0 0 0 0.12182 1 5414 5414 5.2307 1.6342 1 41563 + 53506 17369 33292 33310 61775 61775 -0.019529071268379994 WCGRMIAY 8 Unmodified _WCGRMIAY_ 0 0 0 REV__ENST00000530298.5_1_1:156845639-156851431:+|nuORF REV__ENST00000530298.5_1_1:156845639-156851431:+|nuORF MSMS UPN48_class_I_Rep_1 5 499.7446594238281 2 500.23059 998.446628 NaN NaN NaN NaN NaN NaN NaN 72.942 1 76.415 75.915 76.915 3.4732 0 0 0 0.40738 1 17155 17155 0.79363 0 1 + 53507 21126 33293 33311 61776 61776 -0.052657666779737156 WCHHLREK 8 Unmodified _WCHHLREK_ 0 0 0 ENST00000371733.7_1_1:51912728-51926803:-|nuORF ENST00000371733.7_1_1:51912728-51926803:-|nuORF ENST00000371733.7_1_1:51912728-51926803:-|nuORF MSMS UPN48_class_I_Rep_2 6 554.77197265625 2 554.777085 1107.53962 NaN NaN NaN NaN NaN NaN NaN 114.09 1 117.75 117.25 118.25 3.663 0 0 0 0.40738 1 27252 27252 0.79363 0.10326 1 53508 6394 33294 33312 61777 61777 -0.009851259003880841 WCHLLTGR 8 Unmodified _WCHLLTGR_ 0 0 0 REV__L1PB2_dup1290|chr8:25349180-25349922:+|1.550534507462122|0.0246252484339946|5.98|150.0|18|3|sense REV__L1PB2_dup1290|chr8:25349180-25349922:+|1.550534507462122|0.0246252484339946|5.98|150.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 493.25384521484375 2 493.255454 984.496355 NaN NaN NaN NaN NaN NaN NaN 70.899 1 74.417 73.917 74.917 3.5185 0 0 0 0.40581 1 16428 16428 2.8892 0 1 + 53509 25204 33295 33313 61778 61778 0.003486843223527103 WCICCCCCYC 10 Unmodified _WCICCCCCYC_ 0 0 0 ENST00000242728.4_1_12:26273527-26273698:-|nuORF ENST00000242728.4_1_12:26273527-26273698:-|nuORF ENST00000242728.4_1_12:26273527-26273698:-|nuORF MSMS UPN46_class_I_Rep_3 1 601.6578369140625 2 601.658057 1201.30156 NaN NaN NaN NaN NaN NaN NaN 112.11 1 112.11 111.61 112.61 0 0 0 0 0.53105 1 27672 27672 0 0 1 53510 5900 33296 33314 61779 61779 -0.2910372151914089 WCIDKECS 8 Unmodified _WCIDKECS_ 0 0 0 REV__ENST00000523612.1_1_8:142469353-142469512:+|nuORF REV__ENST00000523612.1_1_8:142469353-142469512:+|nuORF MSMS UPN48_class_I_Rep_2 6 491.8097229003906 2 492.201696 982.388838 NaN NaN NaN NaN NaN NaN NaN 110.83 1 114.5 114 115 3.669 0 0 0 0.40738 1 26365 26365 0.79363 0 1 + 53511 22797 33297 33315 61780 61780 -0.10306073394053783 WCIILVVL 8 Unmodified _WCIILVVL_ 0 0 0 REV__nc|ENSG00000118432|P21554-2|CNR1 REV__nc|ENSG00000118432|P21554-2|CNR1 MSMS UPN48_class_I_Rep_1 5 480.13238525390625 2 479.793349 957.572146 NaN NaN NaN NaN NaN NaN NaN 69.771 1 73.23 72.73 73.73 3.4587 0 0 0 0.40581 1 16209 16209 2.8892 0 1 + 53512 18651 33298 33316 61781 61781 0.09166268449928339 WCILCHEF 8 Unmodified _WCILCHEF_ 0 0 0 MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|14|1|sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|14|1|sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|14|1|sense MSMS UPN47_class_I_Rep_1 2 525.7492065429688 2 525.730423 1049.44629 NaN NaN NaN NaN NaN NaN NaN 26.414 1 30.176 29.676 30.676 3.7624 0 0 0 0.40738 1 3774 3774 0.79363 0 1 53513 15960 33299 33317 61782 61782 -0.07645186397826365 WCILFAIV 8 Unmodified _WCILFAIV_ 0 0 0 REV__ENSG00000163914|ENST00000296271|RHO REV__ENSG00000163914|ENST00000296271|RHO MSMS UPN47_class_I_Rep_1 2 482.77099609375 2 482.769874 963.525196 NaN NaN NaN NaN NaN NaN NaN 72.799 1 76.179 75.679 76.679 3.3799 0 0 0 0.40581 1 17836 17836 2.8892 0 1 + 53514 20016 33300 33318 61783 61783 0.04197408898778576 WCILWVWLP 9 Unmodified _WCILWVWLP_ 0 0 0 REV__MER21A_dup1026|chr9:34193336-34193852:-|2.0856694134307143|0.0154481044602566|7.08|151.0|21|2|anti-sense REV__MER21A_dup1026|chr9:34193336-34193852:-|2.0856694134307143|0.0154481044602566|7.08|151.0|21|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 405.8841247558594 3 405.884296 1214.63106 -0.07422 -3.0125E-05 -0.00034428 -1.3974E-07 -0.074565 -3.0265E-05 406.21872775280957 67.335 0.39589 70.787 70.561 70.957 3.4516 43 26 2 0 0 0 0.50328 1 15435 15435 0.26902 0 1 57302 + 53515 31177 33301 33319 61784 61784 0.03232744744241245 WCILWVWLP 9 Unmodified _WCILWVWLP_ 0 0 0 REV__MER21A_dup1026|chr9:34193336-34193852:-|2.0856694134307143|0.0154481044602566|7.08|151.0|21|2|anti-sense REV__MER21A_dup1026|chr9:34193336-34193852:-|2.0856694134307143|0.0154481044602566|7.08|151.0|21|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 406.21832275390625 3 405.884296 1214.63106 0.14569 5.9133E-05 -0.45367 -0.00018414 -0.30798 -0.000125 405.8840305998492 67.025 0.34801 70.533 70.344 70.692 3.5077 35 23 2 0 0 0 0.49458 1 15296 15296 1.1933 0.17977 1 85553 + 53516 31177 33301 33319 61785 61785 0.03232744744241245 WCILWVWLP 9 Unmodified _WCILWVWLP_ 0 0 0 REV__MER21A_dup1026|chr9:34193336-34193852:-|2.0856694134307143|0.0154481044602566|7.08|151.0|21|2|anti-sense REV__MER21A_dup1026|chr9:34193336-34193852:-|2.0856694134307143|0.0154481044602566|7.08|151.0|21|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 405.884296 1214.63106 -0.068119 -2.7649E-05 -0.06379 -2.5891E-05 -0.13191 -5.354E-05 405.88409559754444 66.843 0.32881 70.295 70.232 70.561 3.4516 -0.14778 0.00040165 NaN 1.1933 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 83821 + 53517 31177 33301 33319 0.03232744744241245 WCIMTFWI 8 Unmodified _WCIMTFWI_ 0 0 0 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 MSMS UPN46_class_I_Rep_3 1 550.258544921875 2 550.258816 1098.50308 NaN NaN NaN NaN NaN NaN NaN 119.73 1 119.73 119.23 120.23 0 0 0 0 0.40581 1 29771 29771 2.8892 0 1 53518 5574 33302 33320 61786 61786 -0.04223138841302898 WCIPHCLSF 9 Unmodified _WCIPHCLSF_ 0 0 0 REV__L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|120|1|anti-sense REV__L1M3_dup2877|chr8:8353877-8356348:+|1.0540817118287|0.157213030256458|2.75|148.0|120|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.2510986328125 2 553.251523 1104.48849 0.41953 0.00023211 -0.68087 -0.00037669 -0.26134 -0.00014459 553.2510056614843 58.311 0.2361 61.748 61.729 61.965 3.437 24 15 2 0 0 0 0.45688 1 13464 13464 4.756 0.42677 1 405740 + 53519 24295 33303 33321 61787 61787 -0.05957210989458872 WCKRSSLSSL 10 Unmodified _WCKRSSLSSL_ 0 0 0 ENST00000508878.5_1_5:127396860-127412667:-|nuORF;ENST00000514573.5_1_5:127396860-127398096:-|nuORF;ENST00000501173.6_1_5:127396860-127398103:-|nuORF ENST00000508878.5_1_5:127396860-127412667:-|nuORF ENST00000508878.5_1_5:127396860-127412667:-|nuORF MSMS UPN47_class_I_Rep_1 2 583.8025512695312 2 583.802965 1165.59138 NaN NaN NaN NaN NaN NaN NaN 27.839 1 31.605 31.105 32.105 3.7662 0 0 0 0.53105 1 4203 4203 1.4819 0 1 53520 7130 33304 33322 61788 61788 0.015205730028810649 WCLFFIGLL 9 Unmodified _WCLFFIGLL_ 0 0 0 REV__ENSG00000258839|ENST00000555147|MC1R REV__ENSG00000258839|ENST00000555147|MC1R MSMS UPN47_class_I_Rep_2 3 556.3069458007812 2 556.304081 1110.59361 NaN NaN NaN NaN NaN NaN NaN 64.165 1 67.42 66.92 67.92 3.2556 0 0 0 0.3264 1 15267 15267 9.3474 2.0582 1 + 53521 21390 33305 33323 61789 61789 0.042736534786399716 WCLIMIMEV 9 Unmodified _WCLIMIMEV_ 0 0 0 ENST00000415279.1_1_1:106434930-106435587:+|nuORF ENST00000415279.1_1_1:106434930-106435587:+|nuORF ENST00000415279.1_1_1:106434930-106435587:+|nuORF MSMS UPN48_class_I_Rep_2 6 569.2783203125 2 569.278892 1136.54323 NaN NaN NaN NaN NaN NaN NaN 114.8 1 118.46 117.96 118.96 3.6616 0 0 0 0.40038 1 27456 27456 0.6015 0 1 53522 6643 33306 33324 61790 61790 -0.019579602330395574 WCLLKRGR 8 Unmodified _WCLLKRGR_ 0 0 0 REV__nc|ENSG00000160183|P57727-4|TMPRSS3 REV__nc|ENSG00000160183|P57727-4|TMPRSS3 MSMS UPN47_class_I_Rep_1 2 516.2448120117188 2 516.300196 1030.58584 NaN NaN NaN NaN NaN NaN NaN 41.408 1 45.08 44.58 45.58 3.6719 0 0 0 0.40738 1 8312 8312 0.79363 0.10326 1 + 53523 32026 33307 33325 61791 61791 0.07176939001737992 WCLLKRGR 8 Unmodified _WCLLKRGR_ 0 0 0 REV__nc|ENSG00000160183|P57727-4|TMPRSS3 REV__nc|ENSG00000160183|P57727-4|TMPRSS3 MULTI-SECPEP UPN48_class_I_Rep_1 5 515.798583984375 2 516.300196 1030.58584 0.32701 0.00016883 -4.2053 -0.0021712 -3.8783 -0.0020024 516.2997037860023 28.936 0.15516 32.486 32.413 32.568 3.5499 21 15 2 0 0 0 0.72333 1 3927 3927 0.79363 0.10326 1 34916 + 53524 32026 33307 33325 61792 61792 0.07176939001737992 WCLLNCKLT 9 Unmodified _WCLLNCKLT_ 0 0 0 REV__MSTA_dup3148|chr3:44588085-44588463:-|1.125512539975586|0.0611565786215651|4.2|151.0|6|2|sense REV__MSTA_dup3148|chr3:44588085-44588463:-|1.125512539975586|0.0611565786215651|4.2|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.2803344726562 2 547.28028 1092.54601 0.51906 0.00028407 0.0075952 4.1567E-06 0.52666 0.00028823 547.28025611672 50.87 0.31206 54.086 53.953 54.265 3.2163 20 13 2 0 0 0 0.48643 1 11259 11259 2.0598 0 1 53908 + 53525 31847 33308 33326 61793 61793 0.0034363121612841496 WCLSLFWYQY 10 Unmodified _WCLSLFWYQY_ 0 0 0 L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|340|3|anti-sense L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|340|3|anti-sense L1PA6_dup5342|chr16:47541008-47547243:-|2.9302136816605766|0.2903002247253226|3.34|151.0|340|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 469.54888916015625 3 470.218003 1407.63218 -0.32882 -0.00015462 -0.5063 -0.00023807 -0.83513 -0.00039269 470.217690920273 33.649 0.14572 37.347 37.315 37.46 3.6983 12 9 2 0 0 0 0.84575 1 5965 5965 0.69767 0 1 45165 53526 14665 33309 33327 61794 61794 -0.05533085677507188 WCMFFDLR 8 Unmodified _WCMFFDLR_ 0 0 0 L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|201|3|anti-sense L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|201|3|anti-sense L1M1_dup5428|chrX:75037178-75040993:-|1.1282600604337876|0.0329330852376052|5.1|151.0|201|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.2531127929688 2 559.251523 1116.48849 NaN NaN NaN NaN NaN NaN NaN 42.849 1 46.088 45.588 46.588 3.2394 0 0 0 0.40738 1 8833 8833 0.79363 0 1 53527 8595 33310 33328 61795 61795 -0.06509210989452185 WCPWALQP 8 Unmodified _WCPWALQP_ 0 0 0 REV__nc|ENSG00000164007|Q8N6F1-3|CLDN19 REV__nc|ENSG00000164007|Q8N6F1-3|CLDN19 MSMS UPN48_class_I_Rep_3 7 500.31640625 2 500.739105 999.463658 NaN NaN NaN NaN NaN NaN NaN 20.393 1 24.06 23.56 24.56 3.6667 0 0 0 0.40404 1 1726 1726 5.2307 0 1 + 53528 32038 33311 33329 61796 61796 -0.036095228005251556 WCPYWHLE 8 Unmodified _WCPYWHLE_ 0 0 0 MER52A_dup259|chr3:138767449-138769230:-|2.7641482361041168|0.0253892605404931|6.77|151.0|36|3|sense MER52A_dup259|chr3:138767449-138769230:-|2.7641482361041168|0.0253892605404931|6.77|151.0|36|3|sense MER52A_dup259|chr3:138767449-138769230:-|2.7641482361041168|0.0253892605404931|6.77|151.0|36|3|sense MSMS UPN48_class_I_Rep_1 5 567.6751708984375 2 567.247295 1132.48004 NaN NaN NaN NaN NaN NaN NaN 116.8 1 120.43 119.93 120.93 3.6254 0 0 0 0.40738 1 28452 28452 0.79363 0 1 53529 16095 33312 33330 61797 61797 -0.08090441634431045 WCQFWLGAL 9 Unmodified _WCQFWLGAL_ 0 0 0 REV__ENST00000419179.5_1_7:87838740-87846454:-|nuORF REV__ENST00000419179.5_1_7:87838740-87846454:-|nuORF MSMS UPN47_class_I_Rep_3 4 562.7451782226562 2 562.273312 1122.53207 NaN NaN NaN NaN NaN NaN NaN 81.885 1 85.208 84.708 85.708 3.3231 0 0 0 0.36505 1 20510 20510 7.2892 0.56607 1 + 53530 22237 33313 33331 61798 61798 -0.024292782206657648 WCRHRRNH 8 Unmodified _WCRHRRNH_ 0 0 0 REV__ENST00000262646.11_1_8:61429636-61471420:+|nuORF REV__ENST00000262646.11_1_8:61429636-61471420:+|nuORF MSMS UPN48_class_I_Rep_3 7 583.248779296875 2 582.78885 1163.56315 NaN NaN NaN NaN NaN NaN NaN 23.535 1 27.286 26.786 27.786 3.7507 0 0 0 0.40746 1 2593 2593 0.69038 0 1 + 53531 21572 33314 33332 61799 61799 -0.01209267343188003 WCRKWMKP 8 Unmodified _WCRKWMKP_ 0 0 0 REV__THE1B-int_dup3237|chr11:105036767-105038358:+|2.063025469349125|0.3639746685693534|2.5|151.0|43|3|sense REV__THE1B-int_dup3237|chr11:105036767-105038358:+|2.063025469349125|0.3639746685693534|2.5|151.0|43|3|sense MSMS UPN47_class_I_Rep_1 2 567.7864990234375 2 567.788607 1133.56266 NaN NaN NaN NaN NaN NaN NaN 12.563 1 16.013 15.513 16.513 3.45 0 0 0 0.40798 1 106 106 0 0 1 + 53532 32260 33315 33333 61800 61800 0.001221768927280209 WCRRQTRRRRW 11 Unmodified _WCRRQTRRRRW_ 0 0 0 REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF MSMS UPN47_class_I_Rep_1 2 554.176025390625 3 553.971042 1658.8913 NaN NaN NaN NaN NaN NaN NaN 20.479 1 24.122 23.622 24.622 3.6436 0 0 0 0.38417 1 2065 2065 0 0 1 + 53533 22369 33316 33334 61801 61801 0.08820722847622164 WCRVVGKRS 9 Unmodified _WCRVVGKRS_ 0 0 0 REV__L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense REV__L1MB3_dup17029|chr22:23240680-23241142:-|2.183065402805693|0.0166322969197844|7.04|151.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 545.8305053710938 2 545.80056 1089.58657 NaN NaN NaN NaN NaN NaN NaN 24.469 1 28.035 27.535 28.535 3.5655 0 0 0 0.39428 1 2706 2706 2.0598 0 1 + 53534 25845 33317 33335 61802 61802 0.04535733650777729 WCSTSHVQF 9 Unmodified _WCSTSHVQF_ 0 0 0 REV__THE1D-int_dup852|chr5:71159641-71161137:-|4.9677794867887926|0.1777362318671129|4.8|151.0|85|3|anti-sense REV__THE1D-int_dup852|chr5:71159641-71161137:-|4.9677794867887926|0.1777362318671129|4.8|151.0|85|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 547.7405395507812 2 547.739834 1093.46511 0.4818 0.0002639 0.16922 9.2686E-05 0.65101 0.00035659 547.7398369534106 77.827 0.094276 81.349 81.258 81.353 3.5221 11 8 2 0 0 0 0.48846 1 18537 18537 1.8442 1.1539 1 176270 + 53535 32312 33318 33336 61803 61803 -0.0778793350241358 WCSTSHVQF 9 Unmodified _WCSTSHVQF_ 0 0 0 REV__THE1D-int_dup852|chr5:71159641-71161137:-|4.9677794867887926|0.1777362318671129|4.8|151.0|85|3|anti-sense REV__THE1D-int_dup852|chr5:71159641-71161137:-|4.9677794867887926|0.1777362318671129|4.8|151.0|85|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 547.739834 1093.46511 0.49003 0.00026841 0.1787 9.7881E-05 0.66873 0.00036629 547.7398659929175 77.943 0.64102 81.564 81.204 81.845 3.6215 0.10753 1.1237E-06 NaN 1.8442 111 70 2 NaN NaN NaN NaN 0 NaN NaN 0 223920 + 53536 32312 33318 33336 -0.0778793350241358 WCVRRPIA 8 Unmodified _WCVRRPIA_ 0 0 0 REV__ENST00000601780.5_1_19:50985512-50985971:+|nuORF REV__ENST00000601780.5_1_19:50985512-50985971:+|nuORF MSMS UPN47_class_I_Rep_3 4 500.77886962890625 2 500.779096 999.54364 NaN NaN NaN NaN NaN NaN NaN 32.383 1 35.67 35.17 36.17 3.2867 0 0 0 0.40738 1 5643 5643 0.79363 0 1 + 53537 23213 33319 33337 61804 61804 0.04384963593327029 WCWHKDRH 8 Unmodified _WCWHKDRH_ 0 0 0 L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|49|2|sense L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|49|2|sense L1M4_dup11061|chrX:72418736-72420581:-|4.493869722759333|0.058780610113535|6.26|151.0|49|2|sense MSMS UPN46_class_I_Rep_3 1 584.3483276367188 2 584.266884 1166.51922 NaN NaN NaN NaN NaN NaN NaN 74.047 1 74.047 73.547 74.547 0 0 0 0 0.40738 1 17176 17176 0.79363 0 1 53538 8826 33320 33338 61805 61805 -0.05738296560184608 WCWHTWQSA 9 Unmodified _WCWHTWQSA_ 0 0 0 ENSG00000198471|ENST00000358241|RTP2 ENSG00000198471|ENST00000358241|RTP2 ENSG00000198471|ENST00000358241|RTP2 MSMS UPN47_class_I_Rep_3 4 602.7527465820312 2 602.753276 1203.492 NaN NaN NaN NaN NaN NaN NaN 75.839 1 79.096 78.596 79.596 3.2573 0 0 0 0.40038 1 18835 18835 0.6015 0 1 53539 5432 33321 33339 61806 61806 -0.10160824891227094 WCWMCSHDQ 9 Unmodified _WCWMCSHDQ_ 0 0 0 REV__L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|84|2|anti-sense REV__L1MD3_dup1658|chr5:175940395-175941958:+|1.1941142110537162|0.1449331257487471|3.04|151.0|84|2|anti-sense MSMS UPN47_class_I_Rep_1 2 598.21044921875 2 598.209529 1194.4045 NaN NaN NaN NaN NaN NaN NaN 115.15 1 118.73 118.23 119.23 3.5809 0 0 0 0.40038 1 28479 28479 0.6015 0 1 + 53540 27472 33322 33340 61807 61807 -0.18492110148667962 WCWVLVPKM 9 Unmodified _WCWVLVPKM_ 0 0 0 REV__ENST00000454068.5_1_1:173836142-173836874:-|nuORF REV__ENST00000454068.5_1_1:173836142-173836874:-|nuORF MSMS UPN48_class_I_Rep_1 5 581.30126953125 2 581.301016 1160.58748 NaN NaN NaN NaN NaN NaN NaN 22.831 1 26.392 25.892 26.892 3.5605 0 0 0 0.4029 1 2285 2285 0 0 1 + 53541 22398 33323 33341 61808 61808 0.013608119754508152 WCYCFIKFV 9 Unmodified _WCYCFIKFV_ 0 0 0 REV__ENSG00000149177.13,PTPRJ,chr11,+,I6.1,48121267,48123612|29|5.42|1|intron REV__ENSG00000149177.13,PTPRJ,chr11,+,I6.1,48121267,48123612|29|5.42|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 605.28857421875 2 604.785198 1207.55584 0.44896 0.00027153 2.1038 0.0012723 2.5528 0.0015439 605.287947842461 69.414 0.36794 72.619 72.462 72.83 3.2044 45 29 2 0 0 0 0.40174 1 16925 16925 7.9102 0 1 106000 + 53542 19607 33324 33342 61809 61809 -0.03963180778487185 WCYCYCCSHC 10 Unmodified _WCYCYCCSHC_ 0 0 0 REV__L1PA13_dup2256|chr4:129013276-129015938:-|4.242122956141757|0.0706407244445689|5.91|151.0|38|2|sense REV__L1PA13_dup2256|chr4:129013276-129015938:-|4.242122956141757|0.0706407244445689|5.91|151.0|38|2|sense MSMS UPN47_class_I_Rep_1 2 635.6843872070312 2 635.683975 1269.3534 NaN NaN NaN NaN NaN NaN NaN 116.36 1 119.96 119.46 120.46 3.6036 0 0 0 0.53105 1 28813 28813 0 0 1 + 53543 29090 33325 33343 61810 61810 -0.27050518509372523 WDAPLCWTR 9 Unmodified _WDAPLCWTR_ 0 0 0 REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF MSMS UPN47_class_I_Rep_3 4 574.2728881835938 2 574.271301 1146.52805 NaN NaN NaN NaN NaN NaN NaN 34.986 1 38.25 37.75 38.75 3.2639 0 0 0 0.39428 1 6425 6425 2.0598 0 1 + 53544 20376 33326 33344 61811 61811 -0.03935367714370841 WDCCPGADGE 10 Unmodified _WDCCPGADGE_ 0 0 0 ENST00000591352.1_1_19:11618808-11624656:-|nuORF ENST00000591352.1_1_19:11618808-11624656:-|nuORF ENST00000591352.1_1_19:11618808-11624656:-|nuORF MSMS UPN47_class_I_Rep_2 3 526.82177734375 2 526.676042 1051.33753 NaN NaN NaN NaN NaN NaN NaN 115.44 1 118.94 118.44 119.44 3.5039 0 0 0 0.53105 1 28142 28142 1.6526 0.85899 1 53545 7622 33327 33345 61812 61812 -0.18608442158756588 WDCCPGADGE 10 Unmodified _WDCCPGADGE_ 0 0 0 ENST00000591352.1_1_19:11618808-11624656:-|nuORF ENST00000591352.1_1_19:11618808-11624656:-|nuORF ENST00000591352.1_1_19:11618808-11624656:-|nuORF MSMS UPN47_class_I_Rep_3 4 526.837890625 2 526.676042 1051.33753 NaN NaN NaN NaN NaN NaN NaN 115.03 1 118.51 118.01 119.01 3.4802 0 0 0 0.53105 1 28271 28271 1.6526 0.85899 1 53546 7622 33327 33345 61813 61813 -0.18608442158756588 WDCFSLVNLF 10 Unmodified _WDCFSLVNLF_ 0 0 0 L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|131|2|anti-sense L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|131|2|anti-sense L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|131|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 622.29443359375 2 622.294442 1242.57433 0.47131 0.00029329 -0.27559 -0.0001715 0.19572 0.0001218 622.7958354165467 71.009 0.061035 74.475 74.43 74.491 3.466 8 5 2 0 0 0 0.56155 1 16571 16571 2.7352 0.89096 1 60011 53547 13821 33328 33346 61814 61814 -0.03725347602949114 WDCFSLVNLF 10 Unmodified _WDCFSLVNLF_ 0 0 0 L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|131|2|anti-sense L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|131|2|anti-sense L1PA14_dup1478|chr7:106897387-106900229:-|2.9193328699116705|0.0580558953164245|5.65|151.0|131|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 622.294442 1242.57433 0.64704 0.00040265 -0.16537 -0.00010291 0.48167 0.00029974 622.2942293331856 70.861 0.079399 74.38 74.336 74.416 3.5185 -0.047445 0.00012343 NaN 2.7352 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 37241 53548 13821 33328 33346 -0.03725347602949114 WDCWVKFY 8 Unmodified _WDCWVKFY_ 0 0 0 L1PA11_dup3789|chr17:29906222-29907526:+|1.848137082487865|0.007083871505225|8.03|151.0|50|1|anti-sense L1PA11_dup3789|chr17:29906222-29907526:+|1.848137082487865|0.007083871505225|8.03|151.0|50|1|anti-sense L1PA11_dup3789|chr17:29906222-29907526:+|1.848137082487865|0.007083871505225|8.03|151.0|50|1|anti-sense MSMS UPN47_class_I_Rep_2 3 573.7582397460938 2 573.757495 1145.50044 NaN NaN NaN NaN NaN NaN NaN 51.85 1 55.183 54.683 55.683 3.3332 0 0 0 0.39819 1 11521 11521 8.5933 0.68312 1 53549 13679 33329 33347 61815 61815 -0.06649270974617139 WDDGCPIY 8 Unmodified _WDDGCPIY_ 0 0 0 L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|27|1|sense L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|27|1|sense L1MA3_dup493|chr1:198736043-198738852:-|8.596573531104985|0.1198837617407057|6.16|151.0|27|1|sense MSMS UPN48_class_I_Rep_1 5 484.7973327636719 2 484.694561 967.374568 NaN NaN NaN NaN NaN NaN NaN 32.072 1 35.599 35.099 36.099 3.5266 0 0 0 0.40738 1 4829 4829 0.79363 0 1 53550 9558 33330 33348 61816 61816 -0.11042402550685892 WDEASFRTE 9 Unmodified _WDEASFRTE_ 0 0 0 nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B MSMS UPN47_class_I_Rep_2 3 570.8482055664062 2 570.751453 1139.48835 NaN NaN NaN NaN NaN NaN NaN 115.86 1 119.36 118.86 119.86 3.4965 0 0 0 0.39428 1 28265 28265 2.0598 0 1 53551 16641 33331 33349 61817 61817 -0.07581216184098594 WDEEPFDF 8 Unmodified _WDEEPFDF_ 0 0 0 PLCB3|p.V775M|1|0.07|ENSG00000149782|chr11:64262776-64262776|G/A|missense_variant;nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3 PLCB3|p.V775M|1|0.07|ENSG00000149782|chr11:64262776-64262776|G/A|missense_variant PLCB3|p.V775M|1|0.07|ENSG00000149782|chr11:64262776-64262776|G/A|missense_variant MSMS UPN48_class_I_Rep_2 6 542.7174072265625 2 542.716547 1083.41854 NaN NaN NaN NaN NaN NaN NaN 115.9 1 119.56 119.06 120.06 3.6607 0 0 0 0.40746 1 27753 27753 0.69038 0 1 53552 3551 33332 33350 61818 61818 -0.11983094852689646 WDFFFFYT 8 Unmodified _WDFFFFYT_ 0 0 0 Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|13|1|sense Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|13|1|sense Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|13|1|sense MSMS UPN48_class_I_Rep_3 7 586.7586669921875 2 586.758018 1171.50148 NaN NaN NaN NaN NaN NaN NaN 118.54 1 122.12 121.62 122.62 3.5847 0 0 0 0.40604 1 28189 28189 2.5775 0.51773 1 53553 33471 33333 33351 61819 61819 -0.07740733334048855 WDFLCVPPF 9 Unmodified _WDFLCVPPF_ 0 0 0 L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|51|3|anti-sense L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|51|3|anti-sense L1MEd_dup16543|chr12:117003468-117004242:-|1.043516876911876|0.182346732797436|2.52|151.0|51|3|anti-sense MSMS UPN47_class_I_Rep_3 4 562.2659301757812 2 562.267696 1122.52084 NaN NaN NaN NaN NaN NaN NaN 34.5 1 37.764 37.264 38.264 3.2639 0 0 0 0.39428 1 6278 6278 2.0598 0 1 53554 13180 33334 33352 61820 61820 -0.03552100314800555 WDGEKEVL 8 Unmodified _WDGEKEVL_ 0 0 0 nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8 nc|ENSG00000162576|Q9BRK3-4|MXRA8 nc|ENSG00000162576|Q9BRK3-4|MXRA8 MSMS UPN48_class_I_Rep_2 6 488.2441711425781 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 111.74 1 115.41 114.91 115.91 3.6666 0 0 0 0.40753 1 26587 26587 0.6015 0 1 53555 3942 33335 33353 61821 61821 -0.01734511719087095 WDGLDSGKLY 10 Unmodified _WDGLDSGKLY_ 0 0 0 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 MULTI-MSMS UPN47_class_I_Rep_1 2 577.2800903320312 2 577.279846 1152.54514 0.36489 0.00021064 0.276 0.00015933 0.64089 0.00036997 577.2797338664304 73.477 0.87937 76.863 76.601 77.48 3.3861 158 82 3 0 0 0 0.54822 1 18007 18007 5.7319 0.83484 1 327250 53556 1335 33336 33354 61822 61822 -0.025031686275497123 WDKSHLVL 8 Unmodified _WDKSHLVL_ 0 0 0 L1MC_dup2748|chr6:13676265-13677417:+|1.0310933332994925|0.0136563412336178|6.24|150.0|82|3|anti-sense;L1ME1_dup12078|chr6:108612702-108615989:-|4.122161937041857|0.0512632626874158|6.33|151.0|132|1|anti-sense;L1MA3_dup2882|chr5:37642564-37647866:-|2.8561974301133928|0.0386269581006027|6.21|150.0|315|3|anti-sense L1MC_dup2748|chr6:13676265-13677417:+|1.0310933332994925|0.0136563412336178|6.24|150.0|82|3|anti-sense L1MC_dup2748|chr6:13676265-13677417:+|1.0310933332994925|0.0136563412336178|6.24|150.0|82|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 499.276123046875 2 499.276909 996.539266 0.13365 6.6729E-05 -1.0836 -0.00054101 -0.94993 -0.00047428 499.2758357225229 67.27 0.19294 70.631 70.568 70.761 3.3611 20 15 2 0 0 0 0.82752 1 16187 16187 0.79363 0 1 65184 53557 9510 33337 33355 61823 61823 0.04085777651414446 WDNWQATWR 9 Unmodified _WDNWQATWR_ 0 0 0 L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|95|3|sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|95|3|sense L1PB1_dup4090|chr5:60933580-60936769:-|5.402819070032107|0.124164192832443|5.44|151.0|95|3|sense MSMS UPN47_class_I_Rep_3 4 631.7876586914062 2 631.788704 1261.56285 NaN NaN NaN NaN NaN NaN NaN 56.446 1 59.618 59.118 60.118 3.1721 0 0 0 0.3967 1 12975 12975 1.4819 0 1 53558 15106 33338 33356 61824 61824 -0.057464085820811306 WDPIKYQR 8 Unmodified _WDPIKYQR_ 0 0 0 REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 553.2921752929688 2 553.293091 1104.57163 -0.099795 -5.5216E-05 -1.13 -0.00062521 -1.2298 -0.00068043 553.292466664086 12.839 0.14644 16.289 16.204 16.351 3.45 16 12 2 0 0 0 0.82752 1 175 175 0.69038 0 1 26890 + 53559 21298 33339 33357 61825 61825 0.023525650544115706 WDPIKYQR 8 Unmodified _WDPIKYQR_ 0 0 0 REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 553.293091 1104.57163 -0.099795 -5.5216E-05 -1.13 -0.00062521 -1.2298 -0.00068043 553.292466664086 12.839 0.14644 16.289 16.204 16.351 3.45 0.021846 -0.00019542 NaN 0.69038 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 26890 + 53560 21298 33339 33357 0.023525650544115706 WDPIKYQR 8 Unmodified _WDPIKYQR_ 0 0 0 REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 553.293091 1104.57163 0.043186 2.3895E-05 -0.87814 -0.00048587 -0.83495 -0.00046197 553.2925613590497 12.858 0.11329 16.246 16.188 16.301 3.388 -0.021846 8.3272E-05 NaN 0.69038 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 27764 + 53561 21298 33339 33357 0.023525650544115706 WDQCRRFY 8 Unmodified _WDQCRRFY_ 0 0 0 ENST00000568308.1_1_15:89728670-89736600:+|nuORF;ABHD2|p.N263Kfs*19|1|0.38|ENSG00000140526|chr15:89185489-89185490|-/G|frameshift_variant;ENSG00000140526|ENST00000352732|ABHD2 ENST00000568308.1_1_15:89728670-89736600:+|nuORF ENST00000568308.1_1_15:89728670-89736600:+|nuORF MSMS UPN46_class_I_Rep_3 1 587.26708984375 2 587.26655 1172.51855 NaN NaN NaN NaN NaN NaN NaN 68.08 1 68.08 67.58 68.58 0 0 0 0 0.40746 1 15528 15528 0.69038 0 1 53562 1 33340 33358 61826 61826 -0.06081135999897924 WDRIFCINFW 10 Unmodified _WDRIFCINFW_ 0 0 0 REV__L1PA6_dup4702|chr12:47674234-47679408:+|3.42160626153214|0.3741802570707959|3.19|150.0|249|2|anti-sense REV__L1PA6_dup4702|chr12:47674234-47679408:+|3.42160626153214|0.3741802570707959|3.19|150.0|249|2|anti-sense MSMS UPN48_class_I_Rep_3 7 467.2955627441406 3 467.225381 1398.65431 NaN NaN NaN NaN NaN NaN NaN 86.245 1 90.015 89.515 90.515 3.7701 0 0 0 0.53105 1 20475 20475 0.15932 0 1 + 53563 29919 33341 33359 61827 61827 -0.02906861209089584 WDRLKARRNFP 11 Unmodified _WDRLKARRNFP_ 0 0 0 L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 486.93963623046875 3 486.940743 1457.8004 0.13853 6.7458E-05 -1.2595 -0.00061329 -1.1209 -0.00054583 486.9400249803653 46.403 0.65619 49.923 49.579 50.235 3.5192 57 41 2 0 0 0 0.68024 1 9046 9046 0.50596 0 1 190670 53564 8691 33342 33360 61828 61828 0.08981157351172442 WDRLKARRNFP 11 Unmodified _WDRLKARRNFP_ 0 0 0 L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 486.9405822753906 3 486.940743 1457.8004 0.16339 7.9562E-05 -0.9956 -0.0004848 -0.8322 -0.00040523 487.2746028340418 46.177 0.66679 49.935 49.592 50.258 3.7579 62 42 2 0 0 0 0.68024 1 8976 8976 0.50596 0.50596 1 171970 53565 8691 33342 33360 61829 61829 0.08981157351172442 WDRLKARRNFP 11 Unmodified _WDRLKARRNFP_ 0 0 0 L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 486.940743 1457.8004 0.13853 6.7458E-05 -1.2595 -0.00061329 -1.1209 -0.00054583 486.9400249803653 46.403 0.65619 49.923 49.579 50.235 3.5192 -0.11725 -0.00021363 NaN 0.50596 57 41 2 NaN NaN NaN NaN 0 NaN NaN 0 190670 53566 8691 33342 33360 0.08981157351172442 WDRLKARRNFP 11 Unmodified _WDRLKARRNFP_ 0 0 0 L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 486.940743 1457.8004 0.16339 7.9562E-05 -0.9956 -0.0004848 -0.8322 -0.00040523 487.2746028340418 46.177 0.66679 49.935 49.592 50.258 3.7579 -0.10475 0.00017184 NaN 0.50596 62 42 2 NaN NaN NaN NaN 0 NaN NaN 0 171970 53567 8691 33342 33360 0.08981157351172442 WDRLKARRNFP 11 Unmodified _WDRLKARRNFP_ 0 0 0 L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense L1M2_dup4777|chr9:14596783-14598725:+|1.427362471674382|0.3825146878929177|1.9|151.0|21|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 486.940743 1457.8004 0.15636 7.6137E-05 -1.6785 -0.00081734 -1.5222 -0.0007412 487.2736934362135 46.626 0.058289 50.262 50.216 50.274 3.6363 0.22201 -0.00082578 NaN 0.50596 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 54602 53568 8691 33342 33360 0.08981157351172442 WDRMVWPYD 9 Unmodified _WDRMVWPYD_ 0 0 0 REV__ENSG00000133116|ENST00000380099|KL REV__ENSG00000133116|ENST00000380099|KL MSMS UPN47_class_I_Rep_3 4 634.2841186523438 2 634.281866 1266.54918 NaN NaN NaN NaN NaN NaN NaN 59.945 1 63.11 62.61 63.61 3.1651 0 0 0 0.39518 1 14041 14041 1.8442 0.19162 1 + 53569 19050 33343 33361 61830 61830 -0.07343402405513189 WDRPRPHR 8 Unmodified _WDRPRPHR_ 0 0 0 REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF MSMS UPN47_class_I_Rep_2 3 560.2990112304688 2 560.299573 1118.58459 NaN NaN NaN NaN NaN NaN NaN 44.412 1 47.767 47.267 48.267 3.3556 0 0 0 0.40746 1 9258 9258 0.69038 0.088878 1 + 53570 21509 33344 33362 61831 61831 0.03004440957170118 WDRRQLSY 8 Unmodified _WDRRQLSY_ 0 0 0 REV__ENST00000395074.6_1_11:58317530-58317575:-|nuORF REV__ENST00000395074.6_1_11:58317530-58317575:-|nuORF MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.285797 1122.55704 NaN NaN NaN NaN NaN NaN NaN 38.592 1 38.592 38.092 39.092 0 0 0 0 0.39819 1 7358 7358 8.5933 0 1 + 53571 22112 33345 33363 61832 61832 0.0006649290628502058 WDRRQLSY 8 Unmodified _WDRRQLSY_ 0 0 0 REV__ENST00000395074.6_1_11:58317530-58317575:-|nuORF REV__ENST00000395074.6_1_11:58317530-58317575:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.2830810546875 2 562.285797 1122.55704 0.045942 2.5833E-05 -0.85307 -0.00047967 -0.80713 -0.00045384 562.2851777591104 33.846 0.58339 37.286 37.084 37.667 3.4398 41 38 2 0 0 0 0.82752 1 6055 6055 8.5933 0 1 57328 + 53572 22112 33345 33363 61833 61833 0.0006649290628502058 WDRSEFIT 8 Unmodified _WDRSEFIT_ 0 0 0 REV__HERVP71A-int_dup188|chr15:75066525-75067944:+|1.497060165921317|0.0228722820340919|6.03|151.0|41|3|sense REV__HERVP71A-int_dup188|chr15:75066525-75067944:+|1.497060165921317|0.0228722820340919|6.03|151.0|41|3|sense MSMS UPN47_class_I_Rep_3 4 527.2532958984375 2 527.253631 1052.49271 NaN NaN NaN NaN NaN NaN NaN 114.07 1 117.57 117.07 118.07 3.4963 0 0 0 0.40746 1 27998 27998 0.69038 0 1 + 53573 23929 33346 33364 61834 61834 -0.031437069705361864 WDSLSCVIH 9 Unmodified _WDSLSCVIH_ 0 0 0 REV__L1MC1_dup1124|chr2:9515028-9515454:-|1.5893038647187987|0.0968646722634979|4.04|151.0|34|2|anti-sense REV__L1MC1_dup1124|chr2:9515028-9515454:-|1.5893038647187987|0.0968646722634979|4.04|151.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.25 2 530.250034 1058.48552 0.31045 0.00016462 -0.22914 -0.0001215 0.08131 4.3115E-05 530.2499382728424 48.778 0.91523 52.301 51.751 52.666 3.5239 130 64 3 0 0 0 0.40174 2 9729 9729;9772 7.9102 0.62092 1 279750 + 53574 26502 33347 33365 61835;61836 61835 -0.04138762842603683 WDSLYDLSY 9 Unmodified _WDSLYDLSY_ 0 0 0 REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.259033203125 2 581.258579 1160.50261 0.34345 0.00019963 0.36736 0.00021353 0.71081 0.00041317 581.2586598918234 65.894 0.86821 69.252 68.911 69.779 3.3576 146 55 4 0 0 0 0.28552 1 15797 15797 14.838 2.5976 1 464570 + 53575 24656 33348 33366 61837 61837 -0.0712256375582001 WDSLYDLSY 9 Unmodified _WDSLYDLSY_ 0 0 0 REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.259033203125 2 581.258579 1160.50261 0.37119 0.00021576 0.25659 0.00014914 0.62778 0.0003649 581.2586144709983 66.067 0.86845 69.326 69.002 69.871 3.2588 147 52 4 0 0 0 0.13631 3 15816 15816;15857;15906 26.884 5.137 1 516240 + 53576 24656 33348 33366 61838;61839;61840 61838 -0.0712256375582001 WDSLYDLSY 9 Unmodified _WDSLYDLSY_ 0 0 0 REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 581.3295288085938 2 581.258579 1160.50261 0.37119 0.00021576 0.25659 0.00014914 0.62778 0.0003649 581.2586144709983 66.067 0.86845 69.326 69.002 69.871 3.2588 147 52 4 0 0 0 0.076885 1 15864 15864 26.884 2.8631 1 516240 + 53577 24656 33348 33366 61841 61841 -0.0712256375582001 WDSLYDLSY 9 Unmodified _WDSLYDLSY_ 0 0 0 REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense REV__L1M5_dup33604|chr10:837259-837980:+|1.4479124977078268|0.0215049107346618|6.07|150.0|28|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.2589721679688 2 581.258579 1160.50261 0.43809 0.00025465 0.26061 0.00015148 0.69871 0.00040613 581.2586320652532 66.148 1.0177 69.334 68.956 69.974 3.1853 193 70 4 0 0 0 0.13631 1 15975 15975 26.884 5.137 1 560030 + 53578 24656 33348 33366 61842 61842 -0.0712256375582001 WDVHLILN 8 Unmodified _WDVHLILN_ 0 0 0 REV__L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|15|1|sense REV__L1MC5a_dup4056|chr4:17897379-17899167:-|3.198090842642592|0.3332797780322317|3.26|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 505.2768249511719 2 505.276909 1008.53927 0.34619 0.00017492 -0.14541 -7.3474E-05 0.20078 0.00010145 505.27683392637925 62.968 1.2462 66.43 65.969 67.215 3.4625 272 93 4 0 0 0 0.82752 1 14019 14019 4.756 0 1 3307900 + 53579 27155 33349 33367 61843 61843 0.035337776514325014 WDVLLCVSG 9 Unmodified _WDVLLCVSG_ 0 0 0 ENSG00000146360|ENST00000275169|GPR6;nc|ENSG00000146360|P46095-2|GPR6 ENSG00000146360|ENST00000275169|GPR6 ENSG00000146360|ENST00000275169|GPR6 MSMS UPN48_class_I_Rep_2 6 496.2513427734375 2 496.249503 990.484453 NaN NaN NaN NaN NaN NaN NaN 24.922 1 28.559 28.059 29.059 3.6363 0 0 0 0.38639 1 2959 2959 3.9444 0.66309 1 53580 3434 33350 33368 61844 61844 -0.011169772114953957 WDVRLVQY 8 Unmodified _WDVRLVQY_ 0 0 0 L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|41|1|sense;L1PA3_dup4709|chr7:37163343-37169491:-|11.219360921703444|0.1922281966360752|5.87|151.0|152|3|sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|41|1|sense L1PA2_dup585|chr2:158522618-158528649:+|1.8530700268055464|0.1536566682751785|3.59|151.0|41|1|sense MSMS UPN48_class_I_Rep_1 5 539.7884521484375 2 539.787641 1077.56073 NaN NaN NaN NaN NaN NaN NaN 57.767 1 61.261 60.761 61.761 3.4942 0 0 0 0.40625 1 12544 12544 2.3027 0 1 53581 14217 33351 33369 61845 61845 0.02505162680131434 WDWMCHCGY 9 Unmodified _WDWMCHCGY_ 0 0 0 REV__L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|112|2|anti-sense REV__L1PA15_dup8190|chr22:20828853-20830758:-|2.5130675705993024|0.0323315268895543|6.28|151.0|112|2|anti-sense MSMS UPN47_class_I_Rep_2 3 600.7066650390625 2 600.706622 1199.39869 NaN NaN NaN NaN NaN NaN NaN 114.44 1 117.95 117.45 118.45 3.5109 0 0 0 0.39428 1 27866 27866 2.0598 0 1 + 53582 29288 33352 33370 61846 61846 -0.19303208660335258 WDYGFVND 8 Unmodified _WDYGFVND_ 0 0 0 REV__nc|ENSG00000290584|Q9P1P4|TAAR3P REV__nc|ENSG00000290584|Q9P1P4|TAAR3P MSMS UPN46_class_I_Rep_3 1 508.2104797363281 2 508.211432 1014.40831 NaN NaN NaN NaN NaN NaN NaN 40.251 1 40.251 39.751 40.751 0 0 0 0 0.40404 1 7801 7801 5.2307 0 1 + 53583 32132 33353 33371 61847 61847 -0.09831657787276527 WDYGRVWL 8 Unmodified _WDYGRVWL_ 0 0 0 ENST00000515592.1_1_5:140041093-140041799:+|nuORF ENST00000515592.1_1_5:140041093-140041799:+|nuORF ENST00000515592.1_1_5:140041093-140041799:+|nuORF MSMS UPN47_class_I_Rep_2 3 547.7613525390625 2 547.774534 1093.53451 NaN NaN NaN NaN NaN NaN NaN 119.05 1 122.53 122.03 123.03 3.4793 0 0 0 0.40746 1 29152 29152 0.69038 0 1 53584 7206 33354 33372 61848 61848 -0.008511064913363953 WDYRRRPP 8 Unmodified _WDYRRRPP_ 0 0 0 AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|16|2|anti-sense;AluSx1_dup105298|chr19:15315573-15315853:+|1.047752110058152|0.0118820333942074|6.46|151.0|19|2|anti-sense AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|16|2|anti-sense;AluSx1_dup105298|chr19:15315573-15315853:+|1.047752110058152|0.0118820333942074|6.46|151.0|19|2|anti-sense AluSc8_dup18804|chr17:43322194-43322506:+|1.036775896523545|0.0977049554777398|3.41|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.3030395507812 2 573.301781 1144.58901 NaN NaN NaN NaN NaN NaN NaN 111.06 1 114.69 114.19 115.19 3.6326 0 0 0 0.40753 1 26942 26942 0.6015 0 1 53585 210;309 33355 33373 61849 61849 0.022499053800856927 WDYRYVLTC 9 Unmodified _WDYRYVLTC_ 0 0 0 AluSz_dup14738|chr2:202738907-202739208:+|1.1890533281042428|0.0180099591685206|6.04|151.0|26|3|anti-sense AluSz_dup14738|chr2:202738907-202739208:+|1.1890533281042428|0.0180099591685206|6.04|151.0|26|3|anti-sense AluSz_dup14738|chr2:202738907-202739208:+|1.1890533281042428|0.0180099591685206|6.04|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 406.8581237792969 3 406.858586 1217.55393 NaN NaN NaN NaN NaN NaN NaN 15.582 1 18.948 18.448 19.448 3.3659 0 0 0 0.3979 1 823 823 1.1933 0.12188 1 53586 340 33356 33374 61850 61850 -0.04614518262724232 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 415.6876220703125 2 415.687593 829.360633 0.080966 3.3657E-05 0.33 0.00013718 0.41097 0.00017083 415.68756411802275 101.39 0.28445 101.39 101.14 101.42 0 46 32 2 0 0 0 0.82752 2 24698 24698;24724 5.2307 2.6532 1 151410 53587 13493 33357 33375 61851;61852 61851 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 415.6874084472656 2 415.687593 829.360633 -0.13768 -5.7233E-05 0.14632 6.0825E-05 0.0086398 3.5915E-06 415.68753834485244 97.364 0.65143 100.97 100.65 101.3 3.6088 152 83 2 0 0 0 0.82752 2 23448 23448;23479 5.2307 2.6532 1 293540 53588 13493 33357 33375 61853;61854 61853 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 415.6875305175781 2 415.687593 829.360633 0.082149 3.4148E-05 -0.20006 -8.3163E-05 -0.11791 -4.9015E-05 415.6873705119462 97.155 0.62763 100.93 100.61 101.24 3.779 149 85 2 0 0 0 0.82752 2 23083 23083;23119 5.2307 0 1 339790 53589 13493 33357 33375 61855;61856 61855 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 415.687593 829.360633 0.080966 3.3657E-05 0.33 0.00013718 0.41097 0.00017083 415.68756411802275 101.39 0.28445 101.39 101.14 101.42 0 0.30346 0.00022421 NaN 5.2307 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 151410 53590 13493 33357 33375 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 415.687593 829.360633 0.098254 4.0843E-05 -0.14722 -6.1198E-05 -0.048966 -2.0355E-05 415.68742510584383 97.475 0.59267 101.26 100.97 101.56 3.7861 0.1794 -0.00017254 NaN 5.2307 139 81 2 NaN NaN NaN NaN 0 NaN NaN 0 177170 53591 13493 33357 33375 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 415.687593 829.360633 -0.39779 -0.00016536 0.23123 9.6119E-05 -0.16657 -6.924E-05 415.6875651263915 97.482 0.5926 100.97 100.71 101.3 3.4836 -0.1164 0.00014209 NaN 5.2307 155 84 2 NaN NaN NaN NaN 0 NaN NaN 0 258160 53592 13493 33357 33375 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 415.687593 829.360633 -0.59132 -0.00024581 0.38113 0.00015843 -0.21019 -8.7373E-05 415.6876488099812 97.555 0.56544 100.98 100.73 101.29 3.4216 -0.10557 0.00026672 NaN 5.2307 118 80 2 NaN NaN NaN NaN 0 NaN NaN 0 217340 53593 13493 33357 33375 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 415.687593 829.360633 -0.13768 -5.7233E-05 0.14632 6.0825E-05 0.0086398 3.5915E-06 415.68753834485244 97.364 0.65143 100.97 100.65 101.3 3.6088 -0.10948 7.1501E-05 NaN 5.2307 152 83 2 NaN NaN NaN NaN 0 NaN NaN 0 293540 53594 13493 33357 33375 -0.060873119874713666 WEAPPSGS 8 Unmodified _WEAPPSGS_ 0 0 0 L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense L1P2_dup218|chr2:159472087-159476186:-|3.465523242026697|0.1035962650388834|5.06|151.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 415.687593 829.360633 0.098009 4.0741E-05 -0.11896 -4.945E-05 -0.02095 -8.7085E-06 415.68738915309507 97.17 0.59792 101.08 100.79 101.39 3.9084 -0.0039763 -0.00014905 NaN 5.2307 170 80 3 NaN NaN NaN NaN 0 NaN NaN 0 282350 53595 13493 33357 33375 -0.060873119874713666 WEDCLRPAWV 10 Unmodified _WEDCLRPAWV_ 0 0 0 AluJr_dup48452|chr10:45874180-45874477:+|1.6068117316030734|0.0206654804552161|6.28|151.0|11|3|sense AluJr_dup48452|chr10:45874180-45874477:+|1.6068117316030734|0.0206654804552161|6.28|151.0|11|3|sense AluJr_dup48452|chr10:45874180-45874477:+|1.6068117316030734|0.0206654804552161|6.28|151.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 637.802001953125 2 637.802965 1273.59138 NaN NaN NaN NaN NaN NaN NaN 40.136 1 43.803 43.303 44.303 3.6668 0 0 0 0.53105 1 7926 7926 1.6526 0 1 53596 155 33358 33376 61857 61857 -0.03447426997149705 WEDYRLTWK 9 Unmodified _WEDYRLTWK_ 0 0 0 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 MSMS UPN47_class_I_Rep_1 2 432.8851013183594 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 100.42 1 104.22 103.72 104.72 3.7942 0 0 0 0.39518 1 24825 24825 0.96228 0.55401 1 53597 3884 33359 33377 61858 61858 -0.006117980909721155 WEDYRLTWK 9 Unmodified _WEDYRLTWK_ 0 0 0 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 MSMS UPN47_class_I_Rep_1 2 432.88507080078125 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 100.88 1 104.68 104.18 105.18 3.7942 0 0 0 0.40098 1 24914 24914 0.20686 0.066965 1 53598 3884 33359 33377 61859 61859 -0.006117980909721155 WEDYRLTWK 9 Unmodified _WEDYRLTWK_ 0 0 0 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 MSMS UPN47_class_I_Rep_2 3 432.88525390625 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 100.63 1 104.14 103.64 104.64 3.5063 0 0 0 0.39518 1 24599 24599 0.96228 0.55401 1 53599 3884 33359 33377 61860 61860 -0.006117980909721155 WEDYRLTWK 9 Unmodified _WEDYRLTWK_ 0 0 0 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 MSMS UPN47_class_I_Rep_3 4 432.88507080078125 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 100.13 1 103.58 103.08 104.08 3.4483 0 0 0 0.39518 1 24748 24748 0.96228 0.55401 1 53600 3884 33359 33377 61861 61861 -0.006117980909721155 WEDYRLTWK 9 Unmodified _WEDYRLTWK_ 0 0 0 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 ENSG00000160716|ENST00000368476|CHRNB2 MSMS UPN48_class_I_Rep_3 7 432.8851318359375 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 100.39 1 104.25 103.75 104.75 3.8537 0 0 0 0.39518 1 23768 23768 0.96228 0.55401 1 53601 3884 33359 33377 61862 61862 -0.006117980909721155 WEEDFWEP 8 Unmodified _WEEDFWEP_ 0 0 0 ENSG00000169676|ENST00000304374|DRD5 ENSG00000169676|ENST00000304374|DRD5 ENSG00000169676|ENST00000304374|DRD5 MSMS UPN47_class_I_Rep_2 3 569.1948852539062 2 569.229822 1136.44509 NaN NaN NaN NaN NaN NaN NaN 119.57 1 123.05 122.55 123.55 3.4793 0 0 0 0.40625 1 29294 29294 2.3027 0 1 53602 4429 33360 33378 61863 61863 -0.11767405961359145 WEEEPFEF 8 Unmodified _WEEEPFEF_ 0 0 0 REV__ENSG00000089022.14,MAPKAPK5,chr12,+,I10.1,111882854,111883580|25|5.66|1|intron REV__ENSG00000089022.14,MAPKAPK5,chr12,+,I10.1,111882854,111883580|25|5.66|1|intron MSMS UPN47_class_I_Rep_2 3 556.7328491210938 2 556.732197 1111.44984 NaN NaN NaN NaN NaN NaN NaN 119.84 1 123.32 122.82 123.82 3.4793 0 0 0 0.40746 1 29370 29370 0.69038 0 1 + 53603 17999 33361 33379 61864 61864 -0.10142521818625028 WEEERNRK 8 Unmodified _WEEERNRK_ 0 0 0 REV__ENSG00000054118|ENST00000354618|THRAP3 REV__ENSG00000054118|ENST00000354618|THRAP3 MSMS UPN47_class_I_Rep_3 4 573.7858276367188 2 573.786161 1145.55777 NaN NaN NaN NaN NaN NaN NaN 48.553 1 51.787 51.287 52.287 3.2345 0 0 0 0.4044 1 10566 10566 4.756 0 1 + 53604 17686 33362 33380 61865 61865 -0.009187124446725647 WEERKMRM 8 Unmodified _WEERKMRM_ 0 0 0 L1MA1_dup15|chr1:28943672-28944514:+|1.0747212773249886|0.0060419925809079|7.47|151.0|9|1|sense L1MA1_dup15|chr1:28943672-28944514:+|1.0747212773249886|0.0060419925809079|7.47|151.0|9|1|sense L1MA1_dup15|chr1:28943672-28944514:+|1.0747212773249886|0.0060419925809079|7.47|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 583.2835693359375 2 583.283886 1164.55322 NaN NaN NaN NaN NaN NaN NaN 23.152 1 26.903 26.403 27.403 3.7507 0 0 0 0.40746 1 2485 2485 0.69038 0 1 53605 9264 33363 33381 61866 61866 -0.022476361834605996 WEFLYYCF 8 Unmodified _WEFLYYCF_ 0 0 0 L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|122|1|anti-sense L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|122|1|anti-sense L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|122|1|anti-sense MSMS UPN48_class_I_Rep_3 7 585.7495727539062 2 585.751879 1169.4892 NaN NaN NaN NaN NaN NaN NaN 113.72 1 117.38 116.88 117.88 3.6568 0 0 0 0.40738 1 27049 27049 0.79363 0 1 53606 15043 33364 33382 61867 61867 -0.08876093068761293 WEGARDVF 8 Unmodified _WEGARDVF_ 0 0 0 REV__nc|ENSG00000142186|Q96KG9-4|SCYL1 REV__nc|ENSG00000142186|Q96KG9-4|SCYL1 MULTI-MSMS UPN47_class_I_Rep_1 2 490.7369689941406 2 490.235242 978.45593 -0.27014 -0.00013243 0.42322 0.00020748 0.15308 7.5046E-05 490.23535779666327 37.794 0.99261 41.459 41.041 42.034 3.6652 128 75 2 0 0 0 0.82752 1 7154 7154 15.847 15.847 1 125040 + 53607 32000 33365 33383 61868 61868 -0.03415958796426821 WEGRGWMV 8 Unmodified _WEGRGWMV_ 0 0 0 MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|12|1|anti-sense MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|12|1|anti-sense MER1B_dup4035|chr12:104692587-104692950:+|1.776916464060113|0.0012090524830634|10.52|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.7402648925781 2 510.739637 1019.46472 NaN NaN NaN NaN NaN NaN NaN 41.046 1 44.552 44.052 45.052 3.506 0 0 0 0.40738 1 7435 7435 0.79363 0 1 53608 15815 33366 33384 61869 61869 -0.044233084316033455 WEHDRDYD 8 Unmodified _WEHDRDYD_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MSMS UPN47_class_I_Rep_2 3 567.7426147460938 2 568.225602 1134.43665 NaN NaN NaN NaN NaN NaN NaN 114.58 1 118.08 117.58 118.58 3.5039 0 0 0 0.40604 1 27906 27906 2.5775 0.27475 1 + 53609 21067 33367 33385 61870 61870 -0.12518959878002534 WEHWWRMERLA 11 Unmodified _WEHWWRMERLA_ 0 0 0 ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 533.9261474609375 3 533.926105 1598.75649 -0.15874 -8.4756E-05 0.95896 0.00051201 0.80022 0.00042726 533.9267161543622 19.304 0.23347 19.304 19.113 19.347 0 57 26 3 0 0 0 0.68478 1 1817 1817 0.094841 0.011491 1 99078 53610 6581 33368 33386 61871 61871 -0.018941951374699784 WEIVHWEK 8 Unmodified _WEIVHWEK_ 0 0 0 ENSG00000124406.16,ATP8A1,chr4,-,I5.1,42594363,42600477|37|15.54|4|intron;nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 ENSG00000124406.16,ATP8A1,chr4,-,I5.1,42594363,42600477|37|15.54|4|intron ENSG00000124406.16,ATP8A1,chr4,-,I5.1,42594363,42600477|37|15.54|4|intron MSMS UPN48_class_I_Rep_3 7 563.7866821289062 2 563.787641 1125.56073 NaN NaN NaN NaN NaN NaN NaN 33.65 1 37.329 36.829 37.829 3.6797 0 0 0 0.40643 1 5258 5258 2.0598 0.21551 1 53611 2464 33369 33387 61872 61872 0.0029716268013544322 WEKINNPTE 9 Unmodified _WEKINNPTE_ 0 0 0 L1ME4b_dup9679|chr7:139880435-139881173:-|1.6378885642205516|0.0801934297434096|4.35|151.0|1|1|sense L1ME4b_dup9679|chr7:139880435-139881173:-|1.6378885642205516|0.0801934297434096|4.35|151.0|1|1|sense L1ME4b_dup9679|chr7:139880435-139881173:-|1.6378885642205516|0.0801934297434096|4.35|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 565.77734375 2 565.77747 1129.54039 NaN NaN NaN NaN NaN NaN NaN 39.722 1 43.389 42.889 43.889 3.6668 0 0 0 0.38784 1 7799 7799 3.5965 0.60125 1 53612 12947 33370 33388 61873 61873 -0.01920052770356051 WELFKFYT 8 Unmodified _WELFKFYT_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|2|1|sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 567.2868041992188 2 567.286943 1132.55933 NaN NaN NaN NaN NaN NaN NaN 26.567 1 30.333 29.833 30.833 3.7663 0 0 0 0.40604 1 3381 3381 2.5775 0.51773 1 + 53613 30222 33371 33389 61874 61874 -0.001644714086296517 WELMKQRK 8 Unmodified _WELMKQRK_ 0 0 0 REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|11|1|sense REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|11|1|sense MSMS UPN47_class_I_Rep_2 3 559.765380859375 2 559.810593 1117.60663 NaN NaN NaN NaN NaN NaN NaN 21.061 1 24.469 23.969 24.969 3.4074 0 0 0 0.40746 1 2293 2293 0.69038 0.088878 1 + 53614 27936 33372 33390 61875 61875 0.05253484590707558 WELMKQRK 8 Unmodified _WELMKQRK_ 0 0 0 REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|11|1|sense REV__L1ME2z_dup6914|chr21:36876467-36878301:-|1.5097578124364175|0.1485078005126056|3.35|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 559.7979125976562 2 559.810593 1117.60663 NaN NaN NaN NaN NaN NaN NaN 32.525 1 36.174 35.674 36.674 3.6497 0 0 0 0.40746 1 5033 5033 0.69038 0 1 + 53615 27936 33372 33390 61876 61876 0.05253484590707558 WELRRRRPKLK 11 Unmodified _WELRRRRPKLK_ 0 0 0 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 MSMS UPN47_class_I_Rep_1 2 513.3230590820312 3 513.323187 1536.94773 NaN NaN NaN NaN NaN NaN NaN 81.349 1 84.836 84.336 85.336 3.4874 0 0 0 0.38417 1 20298 20298 0 0 1 53616 3001 33373 33391 61877 61877 0.20073673955948834 WELSFCFV 8 Unmodified _WELSFCFV_ 0 0 0 LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 515.7393798828125 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 25.579 1 28.93 28.43 29.43 3.3509 0 0 0 0.40746 1 3618 3618 0.69038 0 1 53617 15676 33374 33392 61878 61878 -0.050563622402250985 WELSFCFV 8 Unmodified _WELSFCFV_ 0 0 0 LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense LTR54B_dup132|chr3:5184061-5184458:+|1.472059024306717|0.3366299243937025|2.13|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 515.7381591796875 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 26.816 1 30.379 29.879 30.879 3.5629 0 0 0 0.40738 1 3354 3354 0.79363 0 1 53618 15676 33374 33392 61879 61879 -0.050563622402250985 WELTHDFGL 9 Unmodified _WELTHDFGL_ 0 0 0 L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.7708129882812 2 559.269281 1116.52401 0.29634 0.00016573 -0.7014 -0.00039227 -0.40506 -0.00022654 559.2690002555347 19.479 0.22674 23.101 23.02 23.246 3.6215 25 24 2 0 0 0 0.48846 1 1479 1479 1.8442 0 1 31122 53619 14334 33375 33393 61880 61880 -0.029591339364287705 WELTHDFGL 9 Unmodified _WELTHDFGL_ 0 0 0 L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 559.269281 1116.52401 -0.34478 -0.00019283 0.23314 0.00013039 -0.11164 -6.2437E-05 559.2693284323375 19.574 0.05278 22.925 22.905 22.958 3.3514 -0.077536 0.001297 NaN 1.8442 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 23209 53620 14334 33375 33393 -0.029591339364287705 WELTHDFGL 9 Unmodified _WELTHDFGL_ 0 0 0 L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense L1PA4_dup2419|chr3:151509491-151515631:+|1.0454935840553674|0.0363306393624152|4.85|143.0|195|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 559.269281 1116.52401 0.57897 0.0003238 -1.238 -0.00069236 -0.659 -0.00036856 559.2685280890405 19.444 0.1115 22.982 22.892 23.004 3.5378 -0.020803 -0.00034851 NaN 1.8442 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 21327 53621 14334 33375 33393 -0.029591339364287705 WEMFCFDY 8 Unmodified _WEMFCFDY_ 0 0 0 L1ME1_dup29919|chr20:49129928-49130472:+|1.0591437802244883|0.1042420598366173|3.34|151.0|6|1|sense L1ME1_dup29919|chr20:49129928-49130472:+|1.0591437802244883|0.1042420598366173|3.34|151.0|6|1|sense L1ME1_dup29919|chr20:49129928-49130472:+|1.0591437802244883|0.1042420598366173|3.34|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 570.7306518554688 2 570.711896 1139.40924 NaN NaN NaN NaN NaN NaN NaN 62.649 1 65.905 65.405 66.405 3.2558 0 0 0 0.40738 1 14809 14809 0.79363 0 1 53622 12381 33376 33394 61881 61881 -0.1548890273422785 WEMGHTHL 8 Unmodified _WEMGHTHL_ 0 0 0 REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|3|1|sense REV__MER21-int_dup316|chr6:20467381-20468021:-|1.5907219051825092|0.0093135108334743|7.42|150.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 505.807861328125 2 505.729269 1009.44399 NaN NaN NaN NaN NaN NaN NaN 61.644 1 61.644 61.144 62.144 0 0 0 0 0.40604 1 13731 13731 2.5775 0 1 + 53623 31172 33377 33395 61882 61882 -0.06035898811262541 WEMLCYMY 8 Unmodified _WEMLCYMY_ 0 0 0 L1MB3_dup16891|chr21:44505384-44505879:-|13.668552066488685|0.1269646787131631|6.75|151.0|14|3|sense L1MB3_dup16891|chr21:44505384-44505879:-|13.668552066488685|0.1269646787131631|6.75|151.0|14|3|sense L1MB3_dup16891|chr21:44505384-44505879:-|13.668552066488685|0.1269646787131631|6.75|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 569.7589111328125 2 569.723949 1137.43335 NaN NaN NaN NaN NaN NaN NaN 115.49 1 119.13 118.63 119.63 3.6433 0 0 0 0.40738 1 27479 27479 0.79363 0.10326 1 53624 10375 33378 33396 61883 61883 -0.1298738557222805 WENFQHHWWHF 11 Unmodified _WENFQHHWWHF_ 0 0 0 Tigger2b_Pri_dup1186|chr9:92699072-92700044:-|1.9571456234011224|0.0081316838772561|7.91|151.0|68|3|anti-sense Tigger2b_Pri_dup1186|chr9:92699072-92700044:-|1.9571456234011224|0.0081316838772561|7.91|151.0|68|3|anti-sense Tigger2b_Pri_dup1186|chr9:92699072-92700044:-|1.9571456234011224|0.0081316838772561|7.91|151.0|68|3|anti-sense MSMS UPN46_class_I_Rep_3 1 552.1605834960938 3 551.909331 1652.70617 NaN NaN NaN NaN NaN NaN NaN 12.337 1 12.337 11.837 12.837 0 0 0 0 0.38417 1 87 87 0.094841 0.094841 1 53625 33338 33379 33397 61884 61884 -0.0940798147098576 WENRLNLR 8 Unmodified _WENRLNLR_ 0 0 0 AluSx_dup95408|chr17:4283869-4284174:+|1.0036142378960498|0.1351865700331765|2.89|151.0|7|2|sense AluSx_dup95408|chr17:4283869-4284174:+|1.0036142378960498|0.1351865700331765|2.89|151.0|7|2|sense AluSx_dup95408|chr17:4283869-4284174:+|1.0036142378960498|0.1351865700331765|2.89|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 550.8142700195312 2 550.801614 1099.58868 NaN NaN NaN NaN NaN NaN NaN 46.152 1 49.671 49.171 50.171 3.5192 0 0 0 0.40604 1 8980 8980 2.5775 0 1 53626 305 33380 33398 61885 61885 0.04286485660213657 WEPPTRHP 8 Unmodified _WEPPTRHP_ 0 0 0 nc|ENSG00000144596|Q9C0E4-2|GRIP2 nc|ENSG00000144596|Q9C0E4-2|GRIP2 nc|ENSG00000144596|Q9C0E4-2|GRIP2 MSMS UPN48_class_I_Rep_2 6 510.6808166503906 2 510.256508 1018.49846 NaN NaN NaN NaN NaN NaN NaN 44.371 1 48.133 47.633 48.633 3.7617 0 0 0 0.40604 1 8450 8450 2.5775 0 1 53627 16703 33381 33399 61886 61886 -0.010045636682093573 WEPTITTG 8 Unmodified _WEPTITTG_ 0 0 0 chr5:172117630-172156624|41|10.8|0.35|4.93|-|1|STK10,STK10|1 chr5:172117630-172156624|41|10.8|0.35|4.93|-|1|STK10,STK10|1 chr5:172117630-172156624|41|10.8|0.35|4.93|-|1|STK10,STK10|1 MSMS UPN46_class_I_Rep_3 1 452.7232360839844 2 452.724175 903.433798 NaN NaN NaN NaN NaN NaN NaN 16.025 1 16.025 15.525 16.525 0 0 0 0 0.40746 1 1020 1020 0.69038 0 1 53628 611 33382 33400 61887 61887 -0.02178183264868494 WEPVASLFWP 10 Unmodified _WEPVASLFWP_ 0 0 0 THE1B-int_dup4155|chr21:42998397-42999474:-|1.0980280721028215|0.1354872014232934|3.02|151.0|28|3|sense THE1B-int_dup4155|chr21:42998397-42999474:-|1.0980280721028215|0.1354872014232934|3.02|151.0|28|3|sense THE1B-int_dup4155|chr21:42998397-42999474:-|1.0980280721028215|0.1354872014232934|3.02|151.0|28|3|sense MSMS UPN47_class_I_Rep_1 2 616.3092041015625 2 616.310949 1230.60735 NaN NaN NaN NaN NaN NaN NaN 45.848 1 49.548 49.048 50.048 3.6999 0 0 0 0.53105 1 9669 9669 1.6526 0.17072 1 53629 32929 33383 33401 61888 61888 0.0012660251140914625 WERAHIGCD 9 Unmodified _WERAHIGCD_ 0 0 0 REV__CON__Q2KIG3;REV__ENSG00000165078|ENST00000297770|CPA6;REV__nc|ENSG00000080618|Q96IY4-2|CPB2 REV__ENSG00000165078|ENST00000297770|CPA6 MSMS UPN47_class_I_Rep_3 4 543.3201904296875 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 35.445 1 38.7 38.2 39.2 3.2547 0 0 0 0.39518 1 6566 6566 1.8442 0 1 + + 53630 20101;17490;17907 33384 33402 61889 61889 -0.06805415270878257 WERMVFELM 9 Unmodified _WERMVFELM_ 0 0 0 REV__nc|ENSG00000100033|O43272-1|PRODH REV__nc|ENSG00000100033|O43272-1|PRODH MSMS UPN47_class_I_Rep_1 2 620.7947387695312 2 620.796294 1239.57804 NaN NaN NaN NaN NaN NaN NaN 45.579 1 49.279 48.779 49.779 3.6999 0 0 0 0.38639 1 9587 9587 3.9444 0.66309 1 + 53631 31949 33385 33403 61890 61890 -0.03217001100733796 WERVSRLME 9 Unmodified _WERVSRLME_ 0 0 0 ENSG00000129250|ENST00000320785|KIF1C ENSG00000129250|ENST00000320785|KIF1C ENSG00000129250|ENST00000320785|KIF1C MSMS UPN48_class_I_Rep_1 5 603.305908203125 2 603.308415 1204.60228 NaN NaN NaN NaN NaN NaN NaN 37.199 1 40.706 40.206 41.206 3.507 0 0 0 0.3967 1 6298 6298 1.4819 0.28856 1 53632 2615 33386 33404 61891 61891 0.008159753771451506 WERWRLEH 8 Unmodified _WERWRLEH_ 0 0 0 ENSG00000112164|ENST00000373256|GLP1R ENSG00000112164|ENST00000373256|GLP1R ENSG00000112164|ENST00000373256|GLP1R MSMS UPN46_class_I_Rep_3 1 606.3097534179688 2 606.307064 1210.59957 NaN NaN NaN NaN NaN NaN NaN 93.916 1 93.916 93.416 94.416 0 0 0 0 0.40753 1 22775 22775 0.6015 0.076735 1 53633 2001 33387 33405 61892 61892 0.002698880344951249 WESDERKWRR 10 Unmodified _WESDERKWRR_ 0 0 0 L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|21|2|sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|21|2|sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|21|2|sense MSMS UPN47_class_I_Rep_3 4 483.24493408203125 3 483.244491 1446.71164 NaN NaN NaN NaN NaN NaN NaN 28.267 1 31.601 31.101 32.101 3.3337 0 0 0 0.53105 1 4409 4409 0.15932 0 1 53634 11442 33388 33406 61893 61893 0.006156973208362615 WESLGSSLP 9 Unmodified _WESLGSSLP_ 0 0 0 REV__ENST00000338134.7_1_19:47981013-47983658:-|nuORF REV__ENST00000338134.7_1_19:47981013-47983658:-|nuORF MSMS UPN48_class_I_Rep_2 6 488.2430419921875 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 33.404 1 37.064 36.564 37.564 3.6607 0 0 0 0.38639 1 5267 5267 3.9444 0 1 + 53635 21804 33389 33407 61894 61894 -0.01734511719087095 WEVEAAVSRDP 11 Unmodified _WEVEAAVSRDP_ 0 0 0 AluSz_dup72107|chr13:50061546-50061838:-|1.1676496047760334|0.0125319249146577|6.54|151.0|6|2|sense AluSz_dup72107|chr13:50061546-50061838:-|1.1676496047760334|0.0125319249146577|6.54|151.0|6|2|sense AluSz_dup72107|chr13:50061546-50061838:-|1.1676496047760334|0.0125319249146577|6.54|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 629.8043212890625 2 629.806759 1257.59897 NaN NaN NaN NaN NaN NaN NaN 27.052 1 27.052 26.552 27.552 0 0 0 0 0.38417 1 3963 3963 2.7352 0 1 53636 363 33390 33408 61895 61895 -0.019529961958596687 WEVIRVRLSH 10 Unmodified _WEVIRVRLSH_ 0 0 0 MLT1A_dup74|chr1:26711422-26711588:-|1.0378910630595697|0.0044954088368444|7.85|151.0|4|2|sense MLT1A_dup74|chr1:26711422-26711588:-|1.0378910630595697|0.0044954088368444|7.85|151.0|4|2|sense MLT1A_dup74|chr1:26711422-26711588:-|1.0378910630595697|0.0044954088368444|7.85|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 647.875244140625 2 647.872571 1293.73059 NaN NaN NaN NaN NaN NaN NaN 71.419 1 74.97 74.47 75.47 3.5505 0 0 0 0.53105 1 16663 16663 1.4819 0 1 53637 16240 33391 33409 61896 61896 0.09547278682543947 WEVSSIQEAQ 10 Unmodified _WEVSSIQEAQ_ 0 0 0 L1P3_dup2054|chrX:72437038-72440594:+|3.796873473798668|0.0583670315805057|6.02|151.0|191|3|anti-sense L1P3_dup2054|chrX:72437038-72440594:+|3.796873473798668|0.0583670315805057|6.02|151.0|191|3|anti-sense L1P3_dup2054|chrX:72437038-72440594:+|3.796873473798668|0.0583670315805057|6.02|151.0|191|3|anti-sense MSMS UPN47_class_I_Rep_2 3 588.7789306640625 2 588.78021 1175.54587 NaN NaN NaN NaN NaN NaN NaN 77.457 1 80.789 80.289 81.289 3.3315 0 0 0 0.53105 1 19214 19214 3.2813 0.28607 1 53638 13531 33392 33410 61897 61897 -0.03488373978530035 WEVWLLRSI 9 Unmodified _WEVWLLRSI_ 0 0 0 REV__L1MA2_dup2696|chr6:127307676-127309480:+|1.6538969017952727|0.0568799079638731|4.86|151.0|100|3|anti-sense REV__L1MA2_dup2696|chr6:127307676-127309480:+|1.6538969017952727|0.0568799079638731|4.86|151.0|100|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.3399658203125 2 601.340041 1200.66553 0.39381 0.00023681 0.41913 0.00025204 0.81293 0.00048885 601.3398642212443 53.461 0.20023 57.044 56.921 57.121 3.5836 20 15 2 0 0 0 0.48643 1 11152 11152 2.0598 0.21551 1 76637 + 53639 24843 33393 33411 61898 61898 0.07322284156703063 WEWEFTHDL 9 Unmodified _WEWEFTHDL_ 0 0 0 L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|205|1|anti-sense L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|205|1|anti-sense L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|205|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 631.7756958007812 2 631.77747 1261.54039 0.046805 2.9571E-05 -0.74101 -0.00046815 -0.6942 -0.00043858 631.777011531684 24.603 0.87907 28.086 27.751 28.63 3.483 109 77 2 0 0 0 0.48643 1 3314 3314 2.0598 0.86641 1 69398 53640 14589 33394 33412 61899 61899 -0.0799205277035071 WEWTYVGF 8 Unmodified _WEWTYVGF_ 0 0 0 REV__L1MB5_dup6895|chr13:113249405-113250177:-|1.4171444617142095|0.2295833962316803|2.63|151.0|53|3|anti-sense REV__L1MB5_dup6895|chr13:113249405-113250177:-|1.4171444617142095|0.2295833962316803|2.63|151.0|53|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 544.2477416992188 2 544.247818 1086.48108 0.2469 0.00013438 -0.78717 -0.00042842 -0.54027 -0.00029404 544.2471312990431 48.808 0.6105 52.49 52.192 52.803 3.6819 59 39 3 0 0 0 0.82752 3 10519 10519;10533;10563 2.5775 0.51773 1 84680 + 53641 26092 33395 33413 61900;61901;61902 61900 -0.05869903993857406 WEWTYVGF 8 Unmodified _WEWTYVGF_ 0 0 0 REV__L1MB5_dup6895|chr13:113249405-113250177:-|1.4171444617142095|0.2295833962316803|2.63|151.0|53|3|anti-sense REV__L1MB5_dup6895|chr13:113249405-113250177:-|1.4171444617142095|0.2295833962316803|2.63|151.0|53|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 544.7494506835938 2 544.247818 1086.48108 0.36431 0.00019827 -0.72499 -0.00039458 -0.36069 -0.0001963 544.2472438251812 49.117 0.6786 52.464 52.245 52.923 3.3465 54 45 2 0 0 0 0.82752 2 10686 10686;10691 2.5775 0.51773 1 87117 + 53642 26092 33395 33413 61903;61904 61903 -0.05869903993857406 WFAWAPPL 8 Unmodified _WFAWAPPL_ 0 0 0 REV__ENSG00000170382|ENST00000367177|LRRN2 REV__ENSG00000170382|ENST00000367177|LRRN2 MSMS UPN48_class_I_Rep_3 7 494.2587890625 2 494.257988 986.501424 NaN NaN NaN NaN NaN NaN NaN 37.066 1 40.729 40.229 41.229 3.663 0 0 0 0.40581 1 6204 6204 2.8892 0 1 + 53643 20359 33396 33414 61905 61905 0.007633114566033328 WFAWYYDL 8 Unmodified _WFAWYYDL_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|70|2|sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|70|2|sense MSMS UPN47_class_I_Rep_2 3 582.2619018554688 2 582.263468 1162.51238 NaN NaN NaN NaN NaN NaN NaN 23.842 1 27.308 26.808 27.808 3.4655 0 0 0 0.40738 1 3063 3063 0.79363 0 1 + 53644 29073 33397 33415 61906 61906 -0.06237330959766041 WFCCCCFG 8 Unmodified _WFCCCCFG_ 0 0 0 REV__L1PA6_dup4469|chr11:75974666-75980018:-|2.53458435153854|0.0775317014571722|5.03|151.0|225|2|anti-sense REV__L1PA6_dup4469|chr11:75974666-75980018:-|2.53458435153854|0.0775317014571722|5.03|151.0|225|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 485.30810546875 2 484.64973 967.284907 0.16178 7.8405E-05 -0.0851 -4.1244E-05 0.076676 3.7161E-05 484.6494011401964 48.608 0.24406 52.325 52.201 52.445 3.7175 27 18 2 0 0 0 0.72333 1 9695 9695 0.79363 0 1 67339 + 53645 29912 33398 33416 61907 61907 -0.20004395026921884 WFCHWFIY 8 Unmodified _WFCHWFIY_ 0 0 0 L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|192|3|anti-sense L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|192|3|anti-sense L1PA13_dup8312|chr18:36968087-36971378:+|2.1151959972441663|0.2436494762439139|3.12|151.0|192|3|anti-sense MSMS UPN47_class_I_Rep_2 3 601.2691650390625 2 601.26803 1200.52151 NaN NaN NaN NaN NaN NaN NaN 28.951 1 32.443 31.943 32.943 3.4923 0 0 0 0.40738 1 4567 4567 0.79363 0 1 53646 13802 33399 33417 61908 61908 -0.07073260875085907 WFCHYCFC 8 Unmodified _WFCHYCFC_ 0 0 0 REV__L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|89|1|anti-sense REV__L1PA16_dup7269|chr9:300427-302846:+|17.172674027043968|0.1612175943034482|6.73|151.0|89|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.7483520507812 2 554.695526 1107.3765 NaN NaN NaN NaN NaN NaN NaN 119.39 1 122.8 122.3 123.3 3.4157 0 0 0 0.40581 1 29483 29483 2.8892 0.31174 1 + 53647 29407 33400 33418 61909 61909 -0.17289388338076606 WFCVYLLY 8 Unmodified _WFCVYLLY_ 0 0 0 REV__L1MA2_dup3137|chr8:17996644-17997743:-|5.214595674066995|0.2893056958356707|4.17|151.0|45|1|anti-sense REV__L1MA2_dup3137|chr8:17996644-17997743:-|5.214595674066995|0.2893056958356707|4.17|151.0|45|1|anti-sense MSMS UPN47_class_I_Rep_1 2 553.7731323242188 2 553.772614 1105.53067 NaN NaN NaN NaN NaN NaN NaN 113.34 1 116.91 116.41 117.41 3.572 0 0 0 0.40738 1 27959 27959 0.79363 0 1 + 53648 24851 33401 33419 61910 61910 -0.017869123094214956 WFDCLFFY 8 Unmodified _WFDCLFFY_ 0 0 0 REV__L1MC1_dup8682|chr10:63507664-63510007:-|3.865095307413728|0.0449743571010058|6.43|151.0|107|1|anti-sense REV__L1MC1_dup8682|chr10:63507664-63510007:-|3.865095307413728|0.0449743571010058|6.43|151.0|107|1|anti-sense MSMS UPN48_class_I_Rep_2 6 570.714111328125 2 570.746596 1139.47864 NaN NaN NaN NaN NaN NaN NaN 22.31 1 25.956 25.456 26.456 3.6459 0 0 0 0.40738 1 2257 2257 0.79363 0 1 + 53649 26606 33402 33420 61911 61911 -0.08552075723173402 WFDRWGDK 8 Unmodified _WFDRWGDK_ 0 0 0 ENSG00000166105|ENST00000431683|GLB1L3 ENSG00000166105|ENST00000431683|GLB1L3 ENSG00000166105|ENST00000431683|GLB1L3 MSMS UPN47_class_I_Rep_2 3 555.2598876953125 2 555.261791 1108.50903 NaN NaN NaN NaN NaN NaN NaN 61.401 1 64.663 64.163 65.163 3.2618 0 0 0 0.40659 1 14431 14431 1.8442 0.36234 1 53650 4216 33403 33421 61912 61912 -0.04088581013775183 WFFCHRLM 8 Unmodified _WFFCHRLM_ 0 0 0 L1ME3B_dup8089|chr22:40105273-40106184:-|1.873769114680717|0.0195344152986392|6.58|151.0|46|2|anti-sense L1ME3B_dup8089|chr22:40105273-40106184:-|1.873769114680717|0.0195344152986392|6.58|151.0|46|2|anti-sense L1ME3B_dup8089|chr22:40105273-40106184:-|1.873769114680717|0.0195344152986392|6.58|151.0|46|2|anti-sense MSMS UPN46_class_I_Rep_3 1 570.2677612304688 2 570.267507 1138.52046 NaN NaN NaN NaN NaN NaN NaN 80.921 1 80.921 80.421 81.421 0 0 0 0 0.40746 1 19086 19086 0.69038 0 1 53651 12737 33404 33422 61913 61913 -0.04325798515651513 WFFHKMTIS 9 Unmodified _WFFHKMTIS_ 0 0 0 L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|68|2|anti-sense L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|68|2|anti-sense L1PA15_dup721|chr2:62874942-62876546:+|2.752135621300059|0.3098912244031903|3.15|150.0|68|2|anti-sense MSMS UPN47_class_I_Rep_3 4 598.800048828125 2 598.799694 1195.58484 NaN NaN NaN NaN NaN NaN NaN 78.467 1 81.749 81.249 82.249 3.2816 0 0 0 0.40038 1 19571 19571 0.6015 0 1 53652 13974 33405 33423 61914 61914 -0.005133201578246371 WFFKRRLPC 9 Unmodified _WFFKRRLPC_ 0 0 0 HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|25|3|anti-sense HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|25|3|anti-sense HAL1_dup13148|chr9:131417057-131417673:-|2.5166153072803423|0.0426463953107611|5.88|151.0|25|3|anti-sense MSMS UPN46_class_I_Rep_3 1 626.8428955078125 2 626.842228 1251.6699 NaN NaN NaN NaN NaN NaN NaN 41.902 1 41.902 41.402 42.402 0 0 0 0 0.4007 1 8254 8254 0.52476 0 1 53653 7796 33406 33424 61915 61915 0.05413470098642392 WFFKWLRR 8 Unmodified _WFFKWLRR_ 0 0 0 REV__nc|ENSG00000115306|Q01082-3|SPTBN1 REV__nc|ENSG00000115306|Q01082-3|SPTBN1 MSMS UPN48_class_I_Rep_2 6 619.8518676757812 2 619.85091 1237.68727 NaN NaN NaN NaN NaN NaN NaN 84.57 1 88.264 87.764 88.764 3.6937 0 0 0 0.40746 1 20126 20126 0.69038 0.16561 1 + 53654 18555 33407 33425 61916 61916 0.07793133695918186 WFFLWPHV 8 Unmodified _WFFLWPHV_ 0 0 0 L1MEc_dup10276|chr9:92973415-92974170:-|1.2162178786141584|0.0204761203540035|5.89|151.0|45|3|anti-sense L1MEc_dup10276|chr9:92973415-92974170:-|1.2162178786141584|0.0204761203540035|5.89|151.0|45|3|anti-sense L1MEc_dup10276|chr9:92973415-92974170:-|1.2162178786141584|0.0204761203540035|5.89|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_2 6 566.290771484375 2 566.292362 1130.57017 NaN NaN NaN NaN NaN NaN NaN 23.241 1 26.884 26.384 27.384 3.6432 0 0 0 0.40738 1 2502 2502 0.79363 0 1 53655 12995 33408 33426 61917 61917 0.010109757562986488 WFFPAVPW 8 Unmodified _WFFPAVPW_ 0 0 0 REV__MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|29|2|sense REV__MSTB-int_dup669|chr12:76517993-76519560:-|3.9452157773004592|0.010938544696498|8.49|151.0|29|2|sense MSMS UPN48_class_I_Rep_2 6 525.2864379882812 2 525.265813 1048.51707 NaN NaN NaN NaN NaN NaN NaN 40.288 1 44.029 43.529 44.529 3.7413 0 0 0 0.40581 1 7239 7239 2.8892 0 1 + 53656 31895 33409 33427 61918 61918 -0.005244020263262428 WFFREWTKRWF 11 Unmodified _WFFREWTKRWF_ 0 0 0 REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|72|3|sense REV__L1PB3_dup1336|chr6:134974028-134976886:+|1.481918468454015|0.3725554711383379|1.99|151.0|72|3|sense MSMS UPN48_class_I_Rep_3 7 563.6200561523438 3 563.62101 1687.8412 NaN NaN NaN NaN NaN NaN NaN 33.21 1 36.899 36.399 37.399 3.6896 0 0 0 0.38417 1 5135 5135 0 0 1 + 53657 30539 33410 33428 61919 61919 0.02479498670754765 WFGARGHH 8 Unmodified _WFGARGHH_ 0 0 0 MER11A_dup888|chr18:3003428-3004482:+|1.264984366344628|0.0233087349736364|5.76|150.0|39|3|sense MER11A_dup888|chr18:3003428-3004482:+|1.264984366344628|0.0233087349736364|5.76|150.0|39|3|sense MER11A_dup888|chr18:3003428-3004482:+|1.264984366344628|0.0233087349736364|5.76|150.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 484.2356872558594 2 484.23591 966.457268 0.15739 7.6215E-05 0.46935 0.00022727 0.62674 0.00030349 484.2361297128307 79.833 0.56921 83.381 82.877 83.446 3.5487 88 65 2 0 0 0 0.82752 1 18962 18962 0 0 1 513710 53658 15786 33411 33429 61920 61920 -0.02730279917000189 WFGARGHH 8 Unmodified _WFGARGHH_ 0 0 0 MER11A_dup888|chr18:3003428-3004482:+|1.264984366344628|0.0233087349736364|5.76|150.0|39|3|sense MER11A_dup888|chr18:3003428-3004482:+|1.264984366344628|0.0233087349736364|5.76|150.0|39|3|sense MER11A_dup888|chr18:3003428-3004482:+|1.264984366344628|0.0233087349736364|5.76|150.0|39|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 484.23591 966.457268 0.2414 0.0001169 0.45327 0.00021949 0.69468 0.00033639 484.2360463079197 79.448 0.49008 83.081 82.84 83.33 3.6331 -0.1501 -8.6898E-06 NaN 0 94 53 2 NaN NaN NaN NaN 0 NaN NaN 0 319130 53659 15786 33411 33429 -0.02730279917000189 WFGFTSKW 8 Unmodified _WFGFTSKW_ 0 0 0 L1MA4A_dup2043|chr5:102981995-102983163:+|1.2380618413068838|0.3920467995735046|1.66|151.0|60|2|anti-sense L1MA4A_dup2043|chr5:102981995-102983163:+|1.2380618413068838|0.3920467995735046|1.66|151.0|60|2|anti-sense L1MA4A_dup2043|chr5:102981995-102983163:+|1.2380618413068838|0.3920467995735046|1.66|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7590942382812 2 529.758352 1057.50215 NaN NaN NaN NaN NaN NaN NaN 118.07 1 121.67 121.17 122.17 3.6036 0 0 0 0.40738 1 29289 29289 0.79363 0 1 53660 9764 33412 33430 61921 61921 -0.024298938943502435 WFGSVPTL 8 Unmodified _WFGSVPTL_ 0 0 0 REV__L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|184|3|sense REV__L1MA3_dup969|chr2:138395445-138403118:+|1.0202996891094072|0.0103821360859885|6.62|151.0|184|3|sense MSMS UPN47_class_I_Rep_1 2 453.7398376464844 2 453.739628 905.464704 NaN NaN NaN NaN NaN NaN NaN 104.88 1 108.61 108.11 109.11 3.7395 0 0 0 0.40604 1 25753 25753 2.5775 0 1 + 53661 25132 33413 33431 61922 61922 0.008190148400558428 WFHFFSIY 8 Unmodified _WFHFFSIY_ 0 0 0 L1MCa_dup5960|chr14:30977818-30978751:+|2.3224133599193557|0.0126558626596854|7.52|151.0|69|3|anti-sense L1MCa_dup5960|chr14:30977818-30978751:+|2.3224133599193557|0.0126558626596854|7.52|151.0|69|3|anti-sense L1MCa_dup5960|chr14:30977818-30978751:+|2.3224133599193557|0.0126558626596854|7.52|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.7748413085938 2 573.774003 1145.53345 0.18973 0.00010886 1.4872 0.00085334 1.677 0.0009622 573.7748718630917 44.39 0.26188 47.634 47.524 47.786 3.2441 18 13 2 0 0 0 0.82752 1 9296 9296 20.871 2.7362 1 60834 53662 11835 33414 33432 61923 61923 -0.033493208602294544 WFHFVTEPH 9 Unmodified _WFHFVTEPH_ 0 0 0 REV__ENST00000493738.5_1_7:128354060-128363382:+|nuORF REV__ENST00000493738.5_1_7:128354060-128363382:+|nuORF MSMS UPN47_class_I_Rep_2 3 600.285400390625 2 600.285266 1198.55598 NaN NaN NaN NaN NaN NaN NaN 49.648 1 52.991 52.491 53.491 3.3431 0 0 0 0.4007 1 10843 10843 0.52476 0 1 + 53663 19127 33415 33433 61924 61924 -0.03535721462617403 WFHKHFIP 8 Unmodified _WFHKHFIP_ 0 0 0 Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|72|3|sense Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|72|3|sense Tigger4_dup1174|chr13:109613341-109615583:-|1.0088143855239171|0.0205113425825315|5.62|139.0|72|3|sense MSMS UPN48_class_I_Rep_2 6 556.295654296875 2 556.295436 1110.57632 NaN NaN NaN NaN NaN NaN NaN 88.193 1 91.921 91.421 92.421 3.7279 0 0 0 0.40738 1 20997 20997 0.79363 0 1 53664 33417 33416 33434 61925 61925 0.025454939878500227 WFHLWVIM 8 Unmodified _WFHLWVIM_ 0 0 0 REV__L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|85|1|anti-sense REV__L1PA17_dup167|chr1:145154111-145156274:-|3.085929585057033|0.0937644808732726|5.04|150.0|85|1|anti-sense MSMS UPN47_class_I_Rep_3 4 566.29296875 2 566.294048 1130.57354 NaN NaN NaN NaN NaN NaN NaN 28.833 1 32.166 31.666 32.666 3.3337 0 0 0 0.40738 1 4576 4576 0.79363 0 1 + 53665 29444 33417 33435 61926 61926 0.013479025386686772 WFHNLKTLF 9 Unmodified _WFHNLKTLF_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|146|3|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|146|3|anti-sense MSMS UPN48_class_I_Rep_1 5 603.3270874023438 2 603.326934 1204.63931 NaN NaN NaN NaN NaN NaN NaN 40.086 1 43.591 43.091 44.091 3.5048 0 0 0 0.4007 1 7153 7153 0.52476 0 1 + 53666 32328 33418 33436 61927 61927 0.04518014985228547 WFHPVLYV 8 Unmodified _WFHPVLYV_ 0 0 0 REV__Tigger17a_dup937|chr7:36509977-36510449:+|3.5426943458411784|0.4356381062176116|3.02|150.0|1|1|sense REV__Tigger17a_dup937|chr7:36509977-36510449:+|3.5426943458411784|0.4356381062176116|3.02|150.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 530.7843627929688 2 530.78437 1059.55419 NaN NaN NaN NaN NaN NaN NaN 119.27 1 119.27 118.77 119.77 0 0 0 0 0.40738 1 29639 29639 0.79363 0 1 + 53667 32609 33419 33437 61928 61928 0.02679269519421723 WFHRRCWY 8 Unmodified _WFHRRCWY_ 0 0 0 Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|18|3|anti-sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|18|3|anti-sense Charlie4a_dup1361|chr7:5331370-5331640:+|1.948952001356806|0.1018787030271231|4.26|151.0|18|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 627.2892456054688 2 627.292902 1252.57125 0.39319 0.00024664 -4.3119 -0.0027048 -3.9187 -0.0024582 627.289589251256 64.519 0.10645 67.774 67.73 67.836 3.2556 13 7 2 0 0 0 0.82752 1 15381 15381 8.5933 4.264 1 97523 53668 521 33420 33438 61929 61929 -0.0449313314641131 WFHSGERRR 9 Unmodified _WFHSGERRR_ 0 0 0 REV__ENST00000492333.5_1_3:45879526-45957062:-|nuORF REV__ENST00000492333.5_1_3:45879526-45957062:-|nuORF MSMS UPN48_class_I_Rep_1 5 615.8167114257812 2 615.815587 1229.61662 NaN NaN NaN NaN NaN NaN NaN 46.182 1 49.701 49.201 50.201 3.5192 0 0 0 0.39428 1 8989 8989 2.0598 0 1 + 53669 22640 33421 33439 61930 61930 0.010998086403105845 WFICPVGAF 9 Unmodified _WFICPVGAF_ 0 0 0 REV__L1ME5_dup1715|chr9:37826085-37826820:+|1.2176934574362477|0.098674996435844|3.63|151.0|36|1|anti-sense REV__L1ME5_dup1715|chr9:37826085-37826820:+|1.2176934574362477|0.098674996435844|3.63|151.0|36|1|anti-sense MSMS UPN46_class_I_Rep_3 1 520.2583618164062 2 520.257131 1038.49971 NaN NaN NaN NaN NaN NaN NaN 89.986 1 89.986 89.486 90.486 0 0 0 0 0.22893 1 21678 21678 14.582 3.4672 1 + 53670 28327 33422 33440 61931 61931 -0.018000656236608847 WFIGKFNL 8 Unmodified _WFIGKFNL_ 0 0 0 REV__Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|80|2|anti-sense REV__Tigger1_dup11103|chr18:9391740-9393240:-|1.9236561498441869|0.0803790484291621|4.58|151.0|80|2|anti-sense MSMS UPN47_class_I_Rep_1 2 512.7865600585938 2 512.78437 1023.55419 NaN NaN NaN NaN NaN NaN NaN 64.885 1 68.241 67.741 68.741 3.3557 0 0 0 0.40404 1 15440 15440 5.2307 2.6532 1 + 53671 32353 33423 33441 61932 61932 0.04335269519413032 WFIMLTYL 8 Unmodified _WFIMLTYL_ 0 0 0 nc|ENSG00000150625|P51674-3|GPM6A;nc|ENSG00000150625|P51674-2|GPM6A;ENSG00000150625|ENST00000393658|GPM6A nc|ENSG00000150625|P51674-3|GPM6A nc|ENSG00000150625|P51674-3|GPM6A MULTI-MSMS UPN47_class_I_Rep_1 2 543.7904052734375 2 543.788264 1085.56198 0.44726 0.00024321 2.9714 0.0016158 3.4186 0.001859 543.7892133189479 78.444 0.14311 81.89 81.842 81.985 3.4456 16 12 2 0 0 0 0.82752 1 19522 19522 5.2307 0.47466 1 89259 53672 3566 33424 33442 61933 61933 0.022616607246618514 WFIPKYFQ 8 Unmodified _WFIPKYFQ_ 0 0 0 ENST00000392869.6_1_2:144709568-144714810:-|nuORF;nc|ENSG00000121964|Q4AE62-4|GTDC1 ENST00000392869.6_1_2:144709568-144714810:-|nuORF ENST00000392869.6_1_2:144709568-144714810:-|nuORF MSMS UPN48_class_I_Rep_3 7 564.7982788085938 2 564.797478 1127.5804 NaN NaN NaN NaN NaN NaN NaN 34.312 1 37.992 37.492 38.492 3.6797 0 0 0 0.40738 1 5438 5438 0.79363 0 1 53673 6529 33425 33443 61934 61934 0.02171538690890884 WFIPRRMH 8 Unmodified _WFIPRRMH_ 0 0 0 ENST00000531381.1_1_11:121960383-121960554:-|nuORF ENST00000531381.1_1_11:121960383-121960554:-|nuORF ENST00000531381.1_1_11:121960383-121960554:-|nuORF MSMS UPN46_class_I_Rep_3 1 571.8058471679688 2 571.805645 1141.59674 NaN NaN NaN NaN NaN NaN NaN 75.015 1 75.015 74.515 75.515 0 0 0 0 0.40738 1 17417 17417 0.79363 0.10326 1 53674 7296 33426 33444 61935 61935 0.0316034137601946 WFISAFFI 8 Unmodified _WFISAFFI_ 0 0 0 REV__L1MC2_dup485|chr2:24716165-24717812:+|1.9701503045813489|0.0751195100045307|4.71|151.0|79|1|anti-sense REV__L1MC2_dup485|chr2:24716165-24717812:+|1.9701503045813489|0.0751195100045307|4.71|151.0|79|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 515.77490234375 2 515.773471 1029.53239 0.28432 0.00014664 1.7153 0.00088469 1.9996 0.0010313 515.7745743951899 41.244 0.32487 44.995 44.85 45.175 3.7509 42 35 2 0 0 0 0.82752 1 7489 7489 5.7604 1.816 1 80128 + 53675 26681 33427 33445 61936 61936 0.01880464770852086 WFKASGTI 8 Unmodified _WFKASGTI_ 0 0 0 ENST00000544520.5_1_15:72546082-72558314:-|nuORF;nc|ENSG00000137817|Q2NL67-3|PARP6;nc|ENSG00000137817|Q2NL67-2|PARP6;ENSG00000137817|ENST00000569795|PARP6 ENST00000544520.5_1_15:72546082-72558314:-|nuORF ENST00000544520.5_1_15:72546082-72558314:-|nuORF MSMS UPN46_class_I_Rep_3 1 455.24481201171875 2 455.245078 908.475603 NaN NaN NaN NaN NaN NaN NaN 104.65 1 104.65 104.15 105.15 0 0 0 0 0.40738 1 25542 25542 0.79363 0 1 53676 3044 33428 33446 61937 61937 0.017704172143453434 WFKKTSKQ 8 Unmodified _WFKKTSKQ_ 0 0 0 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 MSMS UPN47_class_I_Rep_2 3 526.797607421875 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 24.298 1 27.763 27.263 28.263 3.4655 0 0 0 0.40746 1 3198 3198 0.69038 0 1 + 53677 19340 33429 33447 61938 61938 0.05773753059793307 WFKQRLAKWRR 11 Unmodified _WFKQRLAKWRR_ 0 0 0 ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX ENST00000554144.5_1_4:57514888-57516908:-|nuORF ENST00000554144.5_1_4:57514888-57516908:-|nuORF MSMS UPN46_class_I_Rep_3 1 525.64501953125 3 525.644149 1573.91062 NaN NaN NaN NaN NaN NaN NaN 103.31 1 103.31 102.81 103.81 0 0 0 0 0.38417 1 25211 25211 0.094841 0 1 53678 4521 33430 33448 61939 61939 0.1466200241018214 WFKQRLAKWRR 11 Unmodified _WFKQRLAKWRR_ 0 0 0 ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX ENST00000554144.5_1_4:57514888-57516908:-|nuORF ENST00000554144.5_1_4:57514888-57516908:-|nuORF MSMS UPN47_class_I_Rep_1 2 525.309326171875 3 525.644149 1573.91062 NaN NaN NaN NaN NaN NaN NaN 98.931 1 102.72 102.22 103.22 3.7926 0 0 0 0.38417 1 24478 24478 0.094841 0 1 53679 4521 33430 33448 61940 61940 0.1466200241018214 WFKQSIALAT 10 Unmodified _WFKQSIALAT_ 0 0 0 REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|246|3|anti-sense REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|246|3|anti-sense MSMS UPN48_class_I_Rep_1 5 582.5731201171875 2 582.824224 1163.63389 NaN NaN NaN NaN NaN NaN NaN 36.357 1 39.864 39.364 40.364 3.507 0 0 0 0.53105 1 6059 6059 1.3295 0 1 + 53680 29122 33431 33449 61941 61941 0.058622914027409934 WFKTSQKK 8 Unmodified _WFKTSQKK_ 0 0 0 REV__L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|1|1|sense REV__L1MEg_dup6035|chr6:136673018-136674729:+|1.7544027614499969|0.1217588622921265|3.85|150.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 526.7984619140625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 113.4 1 116.91 116.41 117.41 3.5125 0 0 0 0.40738 1 27582 27582 0.79363 0 1 + 53681 28764 33432 33450 61942 61942 0.05773753059816045 WFLEAWKH 8 Unmodified _WFLEAWKH_ 0 0 0 MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|63|3|anti-sense MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|63|3|anti-sense MER52A_dup214|chr3:44386330-44387832:+|1.7866919629763316|0.1591579533805152|3.49|151.0|63|3|anti-sense MSMS UPN48_class_I_Rep_2 6 558.7849731445312 2 558.784902 1115.55525 NaN NaN NaN NaN NaN NaN NaN 21.547 1 25.193 24.693 25.693 3.6459 0 0 0 0.40604 1 2053 2053 2.5775 0.27475 1 53682 16094 33433 33451 61943 61943 0.0020948388830674958 WFLGLIKA 8 Unmodified _WFLGLIKA_ 0 0 0 REV__nc|ENSG00000152463|Q9NV23-2|OLAH REV__nc|ENSG00000152463|Q9NV23-2|OLAH MSMS UPN47_class_I_Rep_3 4 474.29107666015625 2 474.289288 946.564024 NaN NaN NaN NaN NaN NaN NaN 85.816 1 89.187 88.687 89.687 3.3716 0 0 0 0.40738 1 21502 21502 0.79363 0 1 + 53683 32015 33434 33452 61944 61944 0.08860457524804133 WFLKKMIK 8 Unmodified _WFLKKMIK_ 0 0 0 ENST00000400324.8_1_13:60240656-60240770:-|nuORF ENST00000400324.8_1_13:60240656-60240770:-|nuORF ENST00000400324.8_1_13:60240656-60240770:-|nuORF MSMS UPN47_class_I_Rep_2 3 547.3330078125 2 547.333173 1092.65179 NaN NaN NaN NaN NaN NaN NaN 69.767 1 73.043 72.543 73.543 3.2761 0 0 0 0.40738 1 16960 16960 0.79363 0 1 53684 6592 33435 33453 61945 61945 0.109173351238951 WFLMKDWL 8 Unmodified _WFLMKDWL_ 0 0 0 L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 569.7925415039062 2 569.791338 1137.56812 0.46868 0.00026705 -2.1904 -0.0012481 -1.7217 -0.000981 569.7910870022664 34.639 0.09124 38.312 38.286 38.377 3.6735 12 8 2 0 0 0 0.82752 1 5624 5624 4.3292 0 1 68098 53685 10255 33436 33454 61946 61946 0.004841789562078702 WFLMKDWL 8 Unmodified _WFLMKDWL_ 0 0 0 L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 569.791338 1137.56812 0.39069 0.00022261 -0.15209 -8.666E-05 0.2386 0.00013595 569.7913962701383 38.11 0.089657 38.11 38.081 38.171 0 -0.10093 0.00016384 NaN 4.3292 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 182030 53686 10255 33436 33454 0.004841789562078702 WFLMKDWL 8 Unmodified _WFLMKDWL_ 0 0 0 L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense L1MB2_dup5253|chr10:38102135-38104346:-|3.2890005245600906|0.1385095397886878|4.57|151.0|98|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 569.791338 1137.56812 0.46868 0.00026705 -2.1904 -0.0012481 -1.7217 -0.000981 569.7910870022664 34.639 0.09124 38.312 38.286 38.377 3.6735 0.10093 -0.0021589 NaN 4.3292 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 68098 53687 10255 33436 33454 0.004841789562078702 WFLPLVGV 8 Unmodified _WFLPLVGV_ 0 0 0 REV__MSTB-int_dup228|chr4:106089436-106091043:-|1.0511207664629498|0.1815059710976675|2.53|151.0|13|1|sense REV__MSTB-int_dup228|chr4:106089436-106091043:-|1.0511207664629498|0.1815059710976675|2.53|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 465.7778015136719 2 465.776014 929.537475 NaN NaN NaN NaN NaN NaN NaN 88.001 1 88.001 87.501 88.501 0 0 0 0 0.40738 1 21111 21111 0.79363 0 1 + 53688 31893 33437 33455 61947 61947 0.06988768633482323 WFLPRILSG 9 Unmodified _WFLPRILSG_ 0 0 0 nc|ENSG00000275410|P35680-3|HNF1B nc|ENSG00000275410|P35680-3|HNF1B nc|ENSG00000275410|P35680-3|HNF1B MULTI-SECPEP UPN47_class_I_Rep_1 2 544.2540283203125 2 544.816202 1087.61785 0.37217 0.00020276 0.48436 0.00026389 0.85653 0.00046665 545.3195887212092 54.167 0.097927 57.668 57.622 57.72 3.5014 5 3 2 0 0 0 0.12422 1 12198 12198 2.3027 0.4585 1 22411 53689 16847 33438 33456 61948 61948 0.07754629956502868 WFLWILQR 8 Unmodified _WFLWILQR_ 0 0 0 ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF MSMS UPN47_class_I_Rep_1 2 581.3297119140625 2 581.332019 1160.64948 NaN NaN NaN NaN NaN NaN NaN 66.822 1 70.183 69.683 70.683 3.3611 0 0 0 0.40581 1 16032 16032 2.8892 0.15402 1 53690 6001 33439 33457 61949 61949 0.0755862271046226 WFMEGSQNI 9 Unmodified _WFMEGSQNI_ 0 0 0 Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|63|3|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|63|3|sense Tigger1_dup10407|chr15:59073504-59075319:-|1.3258350730775432|0.1132476832233308|3.55|151.0|63|3|sense MSMS UPN47_class_I_Rep_2 3 556.2491455078125 2 556.247492 1110.48043 NaN NaN NaN NaN NaN NaN NaN 14.172 1 17.559 17.059 18.059 3.3871 0 0 0 0.40038 1 509 509 0.6015 0 1 53691 32979 33440 33458 61950 61950 -0.07039066705192454 WFMEMVGFY 9 Unmodified _WFMEMVGFY_ 0 0 0 REV__L1MB5_dup2653|chr6:42596097-42597008:+|1.2299135113105384|0.019221018014888|6.0|151.0|26|2|sense REV__L1MB5_dup2653|chr6:42596097-42597008:+|1.2299135113105384|0.019221018014888|6.0|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 605.2592163085938 2 605.259013 1208.50347 0.5162 0.00031243 0.33371 0.00020198 0.84991 0.00051442 605.7605983932864 52.809 0.74911 56.136 55.902 56.652 3.3266 76 48 2 0 0 0 0.48414 1 11762 11762 2.3027 0 1 311120 + 53692 26051 33441 33459 61951 61951 -0.09243763912081704 WFMGFLVE 8 Unmodified _WFMGFLVE_ 0 0 0 REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF MSMS UPN48_class_I_Rep_1 5 514.7503662109375 2 514.749139 1027.48372 NaN NaN NaN NaN NaN NaN NaN 79.725 1 83.273 82.773 83.773 3.5487 0 0 0 0.40364 1 19041 19041 5.7604 1.0044 1 + 53693 22787 33442 33460 61952 61952 -0.02891771860549852 WFNASCKNTS 10 Unmodified _WFNASCKNTS_ 0 0 0 REV__ENSG00000184985|ENST00000507866|SORCS2 REV__ENSG00000184985|ENST00000507866|SORCS2 MULTI-MSMS UPN47_class_I_Rep_1 2 579.2552490234375 2 579.255848 1156.49714 0.027992 1.6215E-05 -0.64797 -0.00037534 -0.61997 -0.00035912 579.2551062908807 42.869 0.75427 46.556 46.283 47.038 3.6875 119 53 3 0 0 0 0.56374 1 8705 8705 1.1933 1.1933 1 205910 + 53694 20838 33443 33461 61953 61953 -0.07484565819254385 WFNEPVYY 8 Unmodified _WFNEPVYY_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS UPN47_class_I_Rep_3 4 559.2536010742188 2 559.2531 1116.49165 NaN NaN NaN NaN NaN NaN NaN 29.001 1 32.324 31.824 32.824 3.3235 0 0 0 0.40738 1 4627 4627 0.79363 0 1 + 53695 19922 33444 33462 61954 61954 -0.06193921339422559 WFNTHLWL 8 Unmodified _WFNTHLWL_ 0 0 0 REV__L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|93|1|anti-sense REV__L1MA2_dup2269|chr5:116309620-116311898:-|1.1244863262125386|0.0189548270711708|5.89|150.0|93|1|anti-sense MSMS UPN48_class_I_Rep_1 5 558.7850952148438 2 558.784902 1115.55525 NaN NaN NaN NaN NaN NaN NaN 21.875 1 25.428 24.928 25.928 3.5533 0 0 0 0.40738 1 2064 2064 0.79363 0 1 + 53696 24841 33445 33463 61955 61955 0.0020948388832948694 WFNTKEISF 9 Unmodified _WFNTKEISF_ 0 0 0 ENSG00000183269|ENST00000537935|OR52E8 ENSG00000183269|ENST00000537935|OR52E8 ENSG00000183269|ENST00000537935|OR52E8 MULTI-MSMS UPN48_class_I_Rep_1 5 586.7946166992188 2 586.292756 1170.57096 0.54345 0.00031862 -0.054688 -3.2063E-05 0.48876 0.00028656 586.2926212081462 63.093 0.81623 66.556 66.21 67.027 3.4625 119 57 3 0 0 0 0.49026 1 14096 14096 1.6526 0 1 361940 53697 4991 33446 33464 61956 61956 -0.007502743852910498 WFPCLFLYY 9 Unmodified _WFPCLFLYY_ 0 0 0 REV__L1MC_dup7823|chr20:34466693-34467246:+|1.0554824370097318|0.0536338313068647|4.3|151.0|23|1|anti-sense REV__L1MC_dup7823|chr20:34466693-34467246:+|1.0554824370097318|0.0536338313068647|4.3|151.0|23|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.2987670898438 2 626.298996 1250.58344 0.044987 2.8175E-05 -1.4587 -0.00091359 -1.4137 -0.00088541 626.2979524299834 39.174 0.65224 42.552 42.296 42.948 3.3785 56 34 2 0 0 0 0.50015 1 7612 7612 0.6015 0 1 90083 + 53698 26480 33447 33465 61957 61957 -0.031829542466084604 WFPCLWFLF 9 Unmodified _WFPCLWFLF_ 0 0 0 REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|172|1|anti-sense REV__L1PB1_dup11310|chr15:50212105-50216605:+|2.1148945201110667|0.0523193331824229|5.34|151.0|172|1|anti-sense MSMS UPN48_class_I_Rep_1 5 629.8097534179688 2 629.809531 1257.60451 NaN NaN NaN NaN NaN NaN NaN 35.011 1 38.526 38.026 39.026 3.5144 0 0 0 0.40038 1 5673 5673 0.6015 0 1 + 53699 30319 33448 33466 61958 61958 -0.013989441471039754 WFPDSFMSLQ 10 Unmodified _WFPDSFMSLQ_ 0 0 0 L1PA6_dup2904|chr7:105363215-105364196:+|2.55501655834691|0.024195677688671|6.72|151.0|32|1|anti-sense L1PA6_dup2904|chr7:105363215-105364196:+|2.55501655834691|0.024195677688671|6.72|151.0|32|1|anti-sense L1PA6_dup2904|chr7:105363215-105364196:+|2.55501655834691|0.024195677688671|6.72|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_2 6 629.2818603515625 2 629.284074 1256.5536 NaN NaN NaN NaN NaN NaN NaN 29.306 1 32.938 32.438 33.438 3.6316 0 0 0 0.53105 1 4145 4145 1.4819 0 1 53700 14597 33449 33467 61959 61959 -0.06441937982594936 WFPFEFYH 8 Unmodified _WFPFEFYH_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7958374023438 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 22.98 1 26.541 26.041 27.041 3.5605 0 0 0 0.40604 1 2325 2325 2.5775 1.3841 1 + 53701 25335 33450 33468 61960 61960 -0.06617911239914065 WFPFEFYH 8 Unmodified _WFPFEFYH_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.7650146484375 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 22.366 1 26.012 25.512 26.512 3.6459 0 0 0 0.40738 1 2272 2272 0.79363 0 1 + 53702 25335 33450 33468 61961 61961 -0.06617911239914065 WFPFEFYH 8 Unmodified _WFPFEFYH_ 0 0 0 REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense REV__L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_3 7 586.7628784179688 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 18.664 1 22.252 21.752 22.752 3.5874 0 0 0 0.40738 1 1270 1270 0.79363 0 1 + 53703 25335 33450 33468 61962 61962 -0.06617911239914065 WFPFRWSI 8 Unmodified _WFPFRWSI_ 0 0 0 REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|62|2|sense REV__MER61-int_dup273|chr3:190549314-190552488:-|2.6255882394147467|0.0515976823352682|5.67|151.0|62|2|sense MSMS UPN47_class_I_Rep_1 2 569.7955932617188 2 569.795269 1137.57599 NaN NaN NaN NaN NaN NaN NaN 24.267 1 27.997 27.497 28.497 3.7298 0 0 0 0.40738 1 3142 3142 0.79363 0 1 + 53704 31495 33451 33469 61963 61963 0.012700742679953692 WFPFSYTR 8 Unmodified _WFPFSYTR_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576995.1_1_17:79079719-79080836:+|nuORF;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MSMS UPN48_class_I_Rep_1 5 552.2574462890625 2 552.269084 1102.52362 NaN NaN NaN NaN NaN NaN NaN 77.353 1 80.875 80.375 81.375 3.5221 0 0 0 0.40404 1 18405 18405 5.2307 0 1 53705 4740 33452 33470 61964 61964 -0.023545088656419466 WFPKFLLL 8 Unmodified _WFPKFLLL_ 0 0 0 L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|91|1|anti-sense L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|91|1|anti-sense L1M1_dup5046|chrX:40723695-40726054:+|3.2733667055140714|0.1650624866099537|4.31|151.0|91|1|anti-sense MSMS UPN46_class_I_Rep_3 1 532.3197631835938 2 532.320589 1062.62662 NaN NaN NaN NaN NaN NaN NaN 70.352 1 70.352 69.852 70.852 0 0 0 0 0.40604 1 16162 16162 2.5775 0 1 53706 8590 33453 33471 61965 61965 0.0978160359300091 WFPMLLWL 8 Unmodified _WFPMLLWL_ 0 0 0 L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|99|1|anti-sense L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|99|1|anti-sense L1MA3_dup791|chr2:55195828-55198303:+|1.2505074135525234|0.1577560129436598|2.99|151.0|99|1|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2973022460938 2 553.298799 1104.58304 NaN NaN NaN NaN NaN NaN NaN 19.777 1 23.173 22.673 23.673 3.3963 0 0 0 0.40738 1 1931 1931 0.79363 0 1 53707 9633 33454 33472 61966 61966 0.034936708241957604 WFPMTNAYL 9 Unmodified _WFPMTNAYL_ 0 0 0 REV__L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|137|1|anti-sense REV__L1MA3_dup1175|chr2:202710403-202713716:-|1.002738237469352|0.013599940042288|6.2|149.0|137|1|anti-sense MSMS UPN47_class_I_Rep_2 3 571.7691040039062 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 31.481 1 34.95 34.45 35.45 3.4691 0 0 0 0.39428 1 5333 5333 2.0598 0.21551 1 + 53708 24961 33455 33473 61967 61967 -0.03845001803119885 WFPPYCSR 8 Unmodified _WFPPYCSR_ 0 0 0 THE1A_dup431|chr2:60905924-60906276:-|1.414927818636439|0.0386686642441908|5.19|151.0|7|2|sense;THE1A_dup3365|chr13:21431117-21431470:-|1.7366415768101469|0.0120325411841769|7.17|151.0|8|2|sense;THE1D_dup9725|chr12:104527719-104528079:-|2.91041053612152|0.0046321434815772|9.3|151.0|11|3|sense;THE1B_dup6915|chr5:21486865-21487221:-|3.074499190894296|0.0489272420956698|5.97|151.0|10|3|sense;THE1B_dup7358|chr5:70504984-70505340:+|1.763666202528511|0.018749612913425|6.56|141.0|10|3|sense;THE1B_dup7352|chr5:69905941-69906297:-|2.749805118474153|0.0197158766145947|7.12|151.0|10|3|sense;THE1B_dup7095|chr5:34186953-34187310:+|4.038466601479948|0.0550416792236105|6.2|151.0|11|3|sense THE1A_dup431|chr2:60905924-60906276:-|1.414927818636439|0.0386686642441908|5.19|151.0|7|2|sense THE1A_dup431|chr2:60905924-60906276:-|1.414927818636439|0.0386686642441908|5.19|151.0|7|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 527.9229736328125 2 528.242012 1054.46947 -0.17316 -9.1473E-05 -0.53341 -0.00028177 -0.70658 -0.00037324 528.2430392593747 18.869 0.07246 18.869 18.825 18.897 0 9 8 2 0 0 0 0.72333 1 1706 1706 0.79363 0 1 20594 53709 32863 33456 33474 61968 61968 -0.055584242888471636 WFPTDVLL 8 Unmodified _WFPTDVLL_ 0 0 0 REV__THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|55|1|anti-sense REV__THE1B-int_dup2962|chr10:45479818-45481412:+|2.1804720035164245|0.4315119207816583|2.34|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_3 7 495.83331298828125 2 495.768386 989.522219 NaN NaN NaN NaN NaN NaN NaN 119.05 1 122.64 122.14 123.14 3.5847 0 0 0 0.40738 1 28299 28299 0.79363 0 1 + 53710 32255 33457 33475 61969 61969 0.027038570456056732 WFQCLFFC 8 Unmodified _WFQCLFFC_ 0 0 0 REV__L1ME2_dup1939|chr2:171931808-171932590:-|1.1059262413969897|0.0508774626935497|4.44|151.0|46|2|anti-sense REV__L1ME2_dup1939|chr2:171931808-171932590:-|1.1059262413969897|0.0508774626935497|4.44|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.2353515625 2 547.235341 1092.45613 NaN NaN NaN NaN NaN NaN NaN 23.978 1 27.708 27.208 28.208 3.7298 0 0 0 0.40738 1 3057 3057 0.79363 0 1 + 53711 27845 33458 33476 61970 61970 -0.0863999839243661 WFQFFWEY 8 Unmodified _WFQFFWEY_ 0 0 0 L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|36|2|anti-sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|36|2|anti-sense L1MB4_dup7057|chr15:30923830-30924554:-|1.7376369417955642|0.3203253911031015|2.44|151.0|36|2|anti-sense MSMS UPN47_class_I_Rep_1 2 626.7791137695312 2 626.776742 1251.53893 NaN NaN NaN NaN NaN NaN NaN 42.851 1 46.539 46.039 47.039 3.6875 0 0 0 0.40746 1 8753 8753 0.69038 0.088878 1 53712 10565 33459 33477 61971 61971 -0.0767764206841548 WFQRCHPG 8 Unmodified _WFQRCHPG_ 0 0 0 L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|174|3|anti-sense L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|174|3|anti-sense L1M1_dup3513|chr6:85579341-85582387:+|1.934029770875493|0.0869056185737366|4.48|151.0|174|3|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7379150390625 2 515.737428 1029.4603 NaN NaN NaN NaN NaN NaN NaN 116.98 1 116.98 116.48 117.48 0 0 0 0 0.40738 1 28979 28979 0.79363 0 1 53713 8554 33460 33478 61972 61972 -0.05324772854510229 WFREEKQENGF 11 Unmodified _WFREEKQENGF_ 0 0 0 HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|82|2|anti-sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|82|2|anti-sense HERV3-int_dup282|chr19:53433581-53435083:-|1.4689676103795184|0.3449909850220208|2.09|150.0|82|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 490.7248840332031 3 490.565119 1468.67353 -0.2974 -0.0001459 2.5408 0.0012464 2.2434 0.0011005 490.56558666492094 30.255 0.14996 34 33.923 34.073 3.7449 12 8 3 0 0 0 22.551 1 4944 4944 2.4348 1.1051 1 82435 53714 8043 33461 33479 61973 61973 -0.042062333845024114 WFRHIMEKF 9 Unmodified _WFRHIMEKF_ 0 0 0 REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1 REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1 MSMS UPN48_class_I_Rep_1 5 647.3287353515625 2 647.331693 1292.64883 NaN NaN NaN NaN NaN NaN NaN 58.699 1 62.186 61.686 62.686 3.487 0 0 0 0.25702 1 12832 12832 13.042 2.243 1 + 53715 20411 33462 33480 61974 61974 0.014214599990737042 WFRQFKKIL 9 Unmodified _WFRQFKKIL_ 0 0 0 nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-8|CERKL;nc|ENSG00000188452|Q49MI3-7|CERKL nc|ENSG00000188452|Q49MI3-5|CERKL nc|ENSG00000188452|Q49MI3-5|CERKL MSMS UPN46_class_I_Rep_3 1 633.378173828125 2 633.3795 1264.74445 NaN NaN NaN NaN NaN NaN NaN 84.683 1 84.683 84.183 85.183 0 0 0 0 0.4007 1 20161 20161 0.52476 0 1 53716 5233 33463 33481 61975 61975 0.12266556181657506 WFRVKCWL 8 Unmodified _WFRVKCWL_ 0 0 0 MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|22|2|anti-sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|22|2|anti-sense MER4D_dup547|chr7:75487168-75487476:-|1.1984045161314936|0.0861989203885726|3.8|151.0|22|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.31298828125 2 569.304947 1136.59534 NaN NaN NaN NaN NaN NaN NaN 71.52 1 71.52 71.02 72.02 0 0 0 0 0.40746 1 16481 16481 0.69038 0 1 53717 16029 33464 33482 61976 61976 0.03250707287247678 WFSHLKMYF 9 Unmodified _WFSHLKMYF_ 0 0 0 REV__L1MC2_dup5752|chr19:11933266-11933717:-|4.267531641468342|0.1749514972376186|4.61|151.0|22|2|anti-sense REV__L1MC2_dup5752|chr19:11933266-11933717:-|4.267531641468342|0.1749514972376186|4.61|151.0|22|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 629.81005859375 2 629.807519 1257.60049 0.52589 0.00033121 1.5081 0.00094983 2.034 0.001281 629.8083581630667 65.129 0.38573 68.608 68.497 68.883 3.4792 39 26 2 0 0 0 0.46869 1 14824 14824 3.9444 0.3479 1 123800 + 53718 26693 33465 33483 61977 61977 -0.018010336407996874 WFTGSSIF 8 Unmodified _WFTGSSIF_ 0 0 0 REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|88|1|anti-sense REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|88|1|anti-sense MSMS UPN48_class_I_Rep_2 6 472.7288818359375 2 472.729261 943.443968 NaN NaN NaN NaN NaN NaN NaN 91.83 1 95.593 95.093 96.093 3.7629 0 0 0 0.40364 1 21865 21865 5.7604 0 1 + 53719 29427 33466 33484 61978 61978 -0.03001575539622081 WFTHGKKTC 9 Unmodified _WFTHGKKTC_ 0 0 0 REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|30|2|sense REV__MLT1A-int_dup193|chr6:72669016-72670528:-|2.698767182910093|0.0060651229803432|8.8|150.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 554.2752075195312 2 554.273844 1106.53313 NaN NaN NaN NaN NaN NaN NaN 48.664 1 52.011 51.511 52.511 3.3465 0 0 0 0.38916 1 10540 10540 3.2813 0.70383 1 + 53720 31584 33467 33485 61979 61979 -0.015870638517299085 WFTMSFSYY 9 Unmodified _WFTMSFSYY_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MULTI-MSMS UPN47_class_I_Rep_1 2 616.2582397460938 2 616.260068 1230.50558 0.26446 0.00016298 -0.88769 -0.00054705 -0.62323 -0.00038407 616.2596065581546 49.612 0.79862 53.271 52.769 53.568 3.6592 89 53 3 0 0 0 0.18929 4 10769 10769;10807;10858;10867 21.747 7.165 1 107560 53721 3826 33468 33486 61980;61981;61982;61983 61980 -0.10045011902616352 WFTMSFSYY 9 Unmodified _WFTMSFSYY_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MULTI-MSMS UPN47_class_I_Rep_2 3 616.2597045898438 2 616.260068 1230.50558 0.42971 0.00026481 -0.46833 -0.00028861 -0.038625 -2.3803E-05 616.2597674754433 49.904 0.91399 53.247 52.772 53.686 3.3431 65 52 2 0 0 0 0.18929 5 10896 10896;10943;10978;10990;11034 21.747 5.7733 1 101920 53722 3826 33468 33486 61984;61985;61986;61987;61988 61984 -0.10045011902616352 WFTMSFSYY 9 Unmodified _WFTMSFSYY_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MULTI-MSMS UPN47_class_I_Rep_3 4 616.2600708007812 2 616.260068 1230.50558 0.48621 0.00029963 -0.60375 -0.00037207 -0.11754 -7.2437E-05 616.2595977748166 49.799 0.83071 53.025 52.835 53.666 3.2262 71 46 2 0 0 0 0.33654 2 11003 11003;11090 11.64 2.2929 1 150230 53723 3826 33468 33486 61989;61990 61989 -0.10045011902616352 WFTSACKYY 9 Unmodified _WFTSACKYY_ 0 0 0 Tigger1_dup6027|chr7:152377755-152378647:+|2.24107952039376|0.0098744013419548|7.83|151.0|35|1|anti-sense Tigger1_dup6027|chr7:152377755-152378647:+|2.24107952039376|0.0098744013419548|7.83|151.0|35|1|anti-sense Tigger1_dup6027|chr7:152377755-152378647:+|2.24107952039376|0.0098744013419548|7.83|151.0|35|1|anti-sense MSMS UPN47_class_I_Rep_1 2 584.76220703125 2 584.760235 1167.50592 NaN NaN NaN NaN NaN NaN NaN 51.476 1 55.07 54.57 55.57 3.5932 0 0 0 0.38916 1 11378 11378 3.2813 0.97858 1 53724 33141 33469 33487 61991 61991 -0.07113592182804496 WFVFAEYFS 9 Unmodified _WFVFAEYFS_ 0 0 0 ENST00000564047.1_1_16:89590622-89596095:+|nuORF ENST00000564047.1_1_16:89590622-89596095:+|nuORF ENST00000564047.1_1_16:89590622-89596095:+|nuORF MSMS UPN47_class_I_Rep_1 2 598.2760620117188 2 598.276575 1194.5386 NaN NaN NaN NaN NaN NaN NaN 38.723 1 42.388 41.888 42.888 3.6652 0 0 0 0.40038 1 7494 7494 0.6015 0 1 53725 7475 33470 33488 61992 61992 -0.050890617882942024 WFVFFLFL 8 Unmodified _WFVFFLFL_ 0 0 0 REV__L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|41|3|anti-sense REV__L1MEf_dup9397|chr14:69436240-69436860:-|1.0447999782681603|0.0356815413507983|4.87|151.0|41|3|anti-sense MSMS UPN48_class_I_Rep_2 6 559.8072509765625 2 559.807314 1117.60008 NaN NaN NaN NaN NaN NaN NaN 57.184 1 60.698 60.198 61.198 3.5142 0 0 0 0.40738 1 12347 12347 0.79363 0 1 + 53726 28699 33471 33489 61993 61993 0.04597914701639638 WFVIFLTY 8 Unmodified _WFVIFLTY_ 0 0 0 REV__L1MC3_dup11991|chr18:35995663-35996273:+|1.0870494656700471|0.2941063951761605|1.89|151.0|14|2|sense REV__L1MC3_dup11991|chr18:35995663-35996273:+|1.0870494656700471|0.2941063951761605|1.89|151.0|14|2|sense MSMS UPN48_class_I_Rep_3 7 544.8026733398438 2 544.794404 1087.57425 NaN NaN NaN NaN NaN NaN NaN 64.876 1 68.384 67.884 68.884 3.508 0 0 0 0.40404 1 14617 14617 5.2307 0 1 + 53727 26716 33472 33490 61994 61994 0.03397020459374289 WFVLYSFW 8 Unmodified _WFVLYSFW_ 0 0 0 REV__L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|127|1|anti-sense REV__L1M4_dup18850|chr18:62234743-62237406:-|3.1770592227976526|0.3437680549178068|3.21|151.0|127|1|anti-sense MSMS UPN48_class_I_Rep_3 7 574.2844848632812 2 574.284203 1146.55385 NaN NaN NaN NaN NaN NaN NaN 43.562 1 47.201 46.701 47.701 3.6385 0 0 0 0.40738 1 8121 8121 0.79363 0 1 + 53728 24410 33473 33491 61995 61995 -0.013561502004449721 WFVPKNAH 8 Unmodified _WFVPKNAH_ 0 0 0 ENSG00000162104.10,ADCY9,chr16,-,I8.1,3984151,3988993|24|6.49|2|intron ENSG00000162104.10,ADCY9,chr16,-,I8.1,3984151,3988993|24|6.49|2|intron ENSG00000162104.10,ADCY9,chr16,-,I8.1,3984151,3988993|24|6.49|2|intron MSMS UPN46_class_I_Rep_3 1 499.73504638671875 2 499.763969 997.513385 NaN NaN NaN NaN NaN NaN NaN 16.376 1 16.376 15.876 16.876 0 0 0 0 0.40738 1 1111 1111 0.79363 0 1 53729 3918 33474 33492 61996 61996 0.014529281997965882 WFVPLDQPL 9 Unmodified _WFVPLDQPL_ 0 0 0 REV__HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|231|3|anti-sense REV__HERVK-int_dup191|chr14:24011391-24015051:-|1.1342574749042131|0.1708622823688935|2.73|150.0|231|3|anti-sense MSMS UPN48_class_I_Rep_3 7 557.798095703125 2 557.800217 1113.58588 NaN NaN NaN NaN NaN NaN NaN 59.106 1 62.629 62.129 63.129 3.5231 0 0 0 0.38784 1 12871 12871 3.5965 0.31518 1 + 53730 23789 33475 33493 61997 61997 0.033632174827062045 WFVRMFKF 8 Unmodified _WFVRMFKF_ 0 0 0 REV__L1MEd_dup18629|chr15:94428054-94428796:-|1.9665230825876931|0.0076225164210098|8.01|151.0|53|3|anti-sense REV__L1MEd_dup18629|chr15:94428054-94428796:-|1.9665230825876931|0.0076225164210098|8.01|151.0|53|3|anti-sense MSMS UPN48_class_I_Rep_2 6 580.8079223632812 2 580.807322 1159.60009 NaN NaN NaN NaN NaN NaN NaN 25.708 1 29.341 28.841 29.841 3.6332 0 0 0 0.40746 1 3166 3166 0.69038 0 1 + 53731 28552 33476 33494 61998 61998 0.026675914300085424 WFVVLDKI 8 Unmodified _WFVVLDKI_ 0 0 0 L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|180|3|anti-sense L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|180|3|anti-sense L1PA8A_dup2359|chr20:8378978-8382273:-|5.399921049043596|0.0707478312299697|6.25|151.0|180|3|anti-sense MSMS UPN48_class_I_Rep_2 6 510.2461853027344 2 510.299853 1018.58515 NaN NaN NaN NaN NaN NaN NaN 68.183 1 71.691 71.191 72.191 3.5083 0 0 0 0.40738 1 15708 15708 0.79363 0 1 53732 14975 33477 33495 61999 61999 0.07660422833657776 WFWITKCK 8 Unmodified _WFWITKCK_ 0 0 0 REV__L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|69|3|anti-sense REV__L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|69|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.2931518554688 2 556.291505 1110.56846 NaN NaN NaN NaN NaN NaN NaN 58.371 1 61.87 61.37 62.37 3.4987 0 0 0 0.40738 1 12707 12707 0.79363 0 1 + 53733 28332 33478 33496 62000 62000 0.017595986760397864 WFWNCCFC 8 Unmodified _WFWNCCFC_ 0 0 0 REV__L1PA10_dup1055|chr3:28269865-28270916:-|1.1406172692733842|0.0157860652598967|6.18|151.0|59|2|anti-sense REV__L1PA10_dup1055|chr3:28269865-28270916:-|1.1406172692733842|0.0157860652598967|6.18|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.6975708007812 2 554.695526 1107.3765 NaN NaN NaN NaN NaN NaN NaN 118.14 1 121.74 121.24 122.24 3.6036 0 0 0 0.40738 1 29308 29308 0.79363 0 1 + 53734 28923 33479 33497 62001 62001 -0.17289388338076606 WFWSLVYG 8 Unmodified _WFWSLVYG_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|155|3|anti-sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|155|3|anti-sense MSMS UPN47_class_I_Rep_3 4 529.2606811523438 2 529.260728 1056.5069 NaN NaN NaN NaN NaN NaN NaN 118.62 1 122.04 121.54 122.54 3.4238 0 0 0 0.40738 1 29260 29260 0.79363 0 1 + 53735 30287 33480 33498 62002 62002 -0.019090097515800153 WFWSLVYG 8 Unmodified _WFWSLVYG_ 0 0 0 REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|155|3|anti-sense REV__L1PB_dup328|chr3:174837819-174840152:+|1.5854387451715768|0.2421332081811526|2.71|141.0|155|3|anti-sense MSMS UPN48_class_I_Rep_1 5 529.2594604492188 2 529.260728 1056.5069 NaN NaN NaN NaN NaN NaN NaN 117.52 1 121.14 120.64 121.64 3.6215 0 0 0 0.40738 1 28639 28639 0.79363 0 1 + 53736 30287 33480 33498 62003 62003 -0.019090097515800153 WFWVFRLF 8 Unmodified _WFWVFRLF_ 0 0 0 L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|194|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|194|1|anti-sense L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|194|1|anti-sense MSMS UPN48_class_I_Rep_3 7 600.821044921875 2 600.821287 1199.62802 NaN NaN NaN NaN NaN NaN NaN 35.042 1 38.714 38.214 39.214 3.6721 0 0 0 0.40746 1 5633 5633 0.69038 0.088878 1 53737 13909 33481 33499 62004 62004 0.03619237681732557 WFWVLGFC 8 Unmodified _WFWVLGFC_ 0 0 0 REV__MLT2B4_dup950|chr3:187002935-187003460:-|1.1165278885638177|0.0310443232944034|5.17|151.0|3|1|sense REV__MLT2B4_dup950|chr3:187002935-187003460:-|1.1165278885638177|0.0310443232944034|5.17|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 529.252197265625 2 529.251849 1056.48914 NaN NaN NaN NaN NaN NaN NaN 32.659 1 36.372 35.872 36.872 3.7131 0 0 0 0.40738 1 5648 5648 0.79363 0 1 + 53738 31829 33482 33500 62005 62005 -0.036840482780689854 WFYSAGWS 8 Unmodified _WFYSAGWS_ 0 0 0 REV__L1MB1_dup4350|chr12:3788507-3789299:-|1.0741646435405516|0.1349415782639031|2.99|151.0|22|3|sense REV__L1MB1_dup4350|chr12:3788507-3789299:-|1.0741646435405516|0.1349415782639031|2.99|151.0|22|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 502.2191162109375 2 502.21906 1002.42357 0.28099 0.00014112 -0.070903 -3.5609E-05 0.21008 0.00010551 502.21888931261213 75.331 0.80343 75.331 75.022 75.825 0 187 79 3 0 0 0 0.82752 1 17469 17469 2.3027 2.3027 1 1241800 + 53739 25669 33483 33501 62006 62006 -0.07754746199429974 WFYYMLYY 8 Unmodified _WFYYMLYY_ 0 0 0 L1MD1_dup6209|chr18:62054792-62055722:+|1.1836872178441429|0.1028305554324574|3.52|151.0|22|2|sense L1MD1_dup6209|chr18:62054792-62055722:+|1.1836872178441429|0.1028305554324574|3.52|151.0|22|2|sense L1MD1_dup6209|chr18:62054792-62055722:+|1.1836872178441429|0.1028305554324574|3.52|151.0|22|2|sense MSMS UPN48_class_I_Rep_3 7 416.86083984375 3 416.852661 1247.53615 NaN NaN NaN NaN NaN NaN NaN 25.794 1 29.56 29.06 30.06 3.7663 0 0 0 0.40659 1 3186 3186 1.8442 0 1 53740 11968 33484 33502 62007 62007 -0.07771233517587461 WGALKQIK 8 Unmodified _WGALKQIK_ 0 0 0 REV__AluSz6_dup39274|chr16:68220242-68220467:+|1.3627411743132487|0.1647716268349791|3.05|151.0|9|3|sense REV__AluSz6_dup39274|chr16:68220242-68220467:+|1.3627411743132487|0.1647716268349791|3.05|151.0|9|3|sense MSMS UPN48_class_I_Rep_3 7 472.2880859375 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 87.91 1 91.72 91.22 92.22 3.8104 0 0 0 0.40738 1 20861 20861 0.79363 0 1 + 53741 17082 33485 33503 62008 62008 0.09150671893689832 WGCPLPKV 8 Unmodified _WGCPLPKV_ 0 0 0 REV__L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|52|1|anti-sense REV__L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|52|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 450.2428283691406 2 450.244024 898.473494 0.18462 8.3126E-05 -1.6647 -0.0007495 -1.48 -0.00066638 450.24299390558565 85.343 0.10817 85.343 85.281 85.389 0 13 8 2 0 0 0 0.82752 1 20364 20364 0.69038 0.69038 1 102500 + 53742 24543 33486 33504 62009 62009 0.020196652048639407 WGCPLPKV 8 Unmodified _WGCPLPKV_ 0 0 0 REV__L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|52|1|anti-sense REV__L1M4b_dup3236|chr12:57712497-57713843:-|1.5505769220672694|0.1612579250799633|3.27|151.0|52|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 450.244024 898.473494 -0.20814 -9.3712E-05 -1.1682 -0.00052597 -1.3763 -0.00061968 450.243287471536 82.008 0.033081 85.345 85.315 85.348 3.337 0.00070935 0.00017995 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 19717 + 53743 24543 33486 33504 0.020196652048639407 WGCWLFSE 8 Unmodified _WGCWLFSE_ 0 0 0 L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 514.2205200195312 2 514.220746 1026.42694 -0.29469 -0.00015153 -0.99176 -0.00050998 -1.2864 -0.00066152 514.2201681880385 21.277 0.6354 24.685 24.357 24.992 3.4074 119 70 2 0 0 0 0.82752 2 2281 2281;2383 5.2307 0 1 54253 53744 13490 33487 33505 62010;62011 62010 -0.08521819417092047 WGCWLFSE 8 Unmodified _WGCWLFSE_ 0 0 0 L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense MSMS UPN48_class_I_Rep_2 6 514.2201538085938 2 514.220746 1026.42694 NaN NaN NaN NaN NaN NaN NaN 20.732 1 24.38 23.88 24.88 3.648 0 0 0 0.40404 1 1834 1834 5.2307 0 1 53745 13490 33487 33505 62012 62012 -0.08521819417092047 WGCWLFSE 8 Unmodified _WGCWLFSE_ 0 0 0 L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense MSMS UPN48_class_I_Rep_2 6 514.219970703125 2 514.220746 1026.42694 NaN NaN NaN NaN NaN NaN NaN 21.193 1 24.841 24.341 25.341 3.648 0 0 0 0.40404 1 1959 1959 5.2307 0 1 53746 13490 33487 33505 62013 62013 -0.08521819417092047 WGCWLFSE 8 Unmodified _WGCWLFSE_ 0 0 0 L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense L1P2_dup176|chr2:75681129-75684565:+|1.7174607231200365|0.4523542328644729|1.92|151.0|153|2|anti-sense MSMS UPN48_class_I_Rep_3 7 514.2194213867188 2 514.220746 1026.42694 NaN NaN NaN NaN NaN NaN NaN 20.609 1 24.276 23.776 24.776 3.6667 0 0 0 0.40404 1 1787 1787 5.2307 0 1 53747 13490 33487 33505 62014 62014 -0.08521819417092047 WGCWLREH 8 Unmodified _WGCWLREH_ 0 0 0 ENST00000374736.7_1_9:107651396-107666018:-|nuORF ENST00000374736.7_1_9:107651396-107666018:-|nuORF ENST00000374736.7_1_9:107651396-107666018:-|nuORF MSMS UPN47_class_I_Rep_1 2 543.7509765625 2 543.750536 1085.48652 NaN NaN NaN NaN NaN NaN NaN 117.93 1 121.54 121.04 122.04 3.6036 0 0 0 0.40738 1 29249 29249 0.79363 0 1 53748 6430 33488 33506 62015 62015 -0.05280503683047755 WGDKKYLSRL 10 Unmodified _WGDKKYLSRL_ 0 0 0 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 MSMS UPN48_class_I_Rep_2 6 633.352294921875 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 59.842 1 63.328 62.828 63.828 3.4868 0 0 0 0.53105 1 13163 13163 1.4819 0 1 + 53749 20330 33489 33507 62016 62016 0.07104767697069292 WGDRGKALQ 9 Unmodified _WGDRGKALQ_ 0 0 0 REV__ENST00000479439.5_1_1:43830699-43831981:-|nuORF REV__ENST00000479439.5_1_1:43830699-43831981:-|nuORF MSMS UPN48_class_I_Rep_2 6 515.738037109375 2 515.775065 1029.53558 NaN NaN NaN NaN NaN NaN NaN 49.459 1 53.159 52.659 53.659 3.6998 0 0 0 0.39598 1 9995 9995 1.6526 0 1 + 53750 22556 33490 33508 62017 62017 0.021991078775727146 WGEGREVF 8 Unmodified _WGEGREVF_ 0 0 0 L1MEc_dup6860|chr6:37953750-37955142:-|3.7528743537061073|0.026770690980009|7.13|151.0|26|2|sense L1MEc_dup6860|chr6:37953750-37955142:-|3.7528743537061073|0.026770690980009|7.13|151.0|26|2|sense L1MEc_dup6860|chr6:37953750-37955142:-|3.7528743537061073|0.026770690980009|7.13|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 490.235595703125 2 490.235242 978.45593 -0.27014 -0.00013243 0.42322 0.00020748 0.15308 7.5046E-05 490.23535779666327 37.794 0.99261 41.459 41.041 42.034 3.6652 128 75 2 0 0 0 0.82752 2 7109 7109;7197 11.64 11.64 1 125040 53751 13132 33491 33509 62018;62019 62018 -0.03415958796426821 WGELEINNK 9 Unmodified _WGELEINNK_ 0 0 0 L1MB8_dup15759|chr20:35028392-35028968:-|2.1556317686580915|0.144155093190133|3.9|151.0|19|3|sense L1MB8_dup15759|chr20:35028392-35028968:-|2.1556317686580915|0.144155093190133|3.9|151.0|19|3|sense L1MB8_dup15759|chr20:35028392-35028968:-|2.1556317686580915|0.144155093190133|3.9|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 551.779052734375 2 551.780013 1101.54547 0.035539 1.961E-05 -0.037429 -2.0653E-05 -0.0018899 -1.0428E-06 551.7800053146442 39.1 0.56816 42.479 42.187 42.756 3.3785 58 31 3 0 0 0 0.46869 1 7705 7705 3.9444 0 1 146060 53752 10963 33492 33510 62020 62020 -0.0012374890770843194 WGERLSPL 8 Unmodified _WGERLSPL_ 0 0 0 ENST00000551739.5_1_12:56332068-56333318:+|nuORF;ENST00000552478.5_1_12:56331951-56332941:+|nuORF ENST00000551739.5_1_12:56332068-56333318:+|nuORF ENST00000551739.5_1_12:56332068-56333318:+|nuORF MSMS UPN46_class_I_Rep_3 1 479.58502197265625 2 479.261259 956.507966 NaN NaN NaN NaN NaN NaN NaN 107.08 1 107.08 106.58 107.58 0 0 0 0 0.40625 1 26121 26121 2.3027 0 1 53753 7402 33493 33511 62021 62021 0.02797204617343141 WGFAQGLYL 9 Unmodified _WGFAQGLYL_ 0 0 0 L1PREC2_dup7481|chr19:54879985-54881589:-|1.0478713933467327|0.0782519982816412|3.74|146.0|51|1|anti-sense L1PREC2_dup7481|chr19:54879985-54881589:-|1.0478713933467327|0.0782519982816412|3.74|146.0|51|1|anti-sense L1PREC2_dup7481|chr19:54879985-54881589:-|1.0478713933467327|0.0782519982816412|3.74|146.0|51|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.7680053710938 2 527.77146 1053.52837 0.37463 0.00019772 -3.0597 -0.0016148 -2.6851 -0.0014171 527.7676081108336 81.463 0.19569 84.951 84.793 84.988 3.4874 36 20 3 0 0 0 0.44858 1 20309 20309 5.2307 1.6342 1 59993 53754 15485 33494 33512 62022 62022 0.0037437527712427254 WGFVVFYI 8 Unmodified _WGFVVFYI_ 0 0 0 REV__L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|161|1|anti-sense REV__L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|161|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 515.7736206054688 2 515.773471 1029.53239 0.16404 8.4609E-05 -0.24128 -0.00012445 -0.077235 -3.9836E-05 515.7732595895466 57.897 0.43895 61.188 60.966 61.405 3.2912 56 36 2 0 0 0 0.82752 1 13371 13371 2.8892 0 1 250660 + 53755 28993 33495 33513 62023 62023 0.01880464770852086 WGGVRSLG 8 Unmodified _WGGVRSLG_ 0 0 0 REV__L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|177|3|sense REV__L1PA6_dup3946|chrY:3026853-3032986:-|1.0686372387343652|0.0667480942870911|4.0|106.0|177|3|sense MSMS UPN48_class_I_Rep_2 6 416.2276916503906 2 416.22722 830.439886 NaN NaN NaN NaN NaN NaN NaN 66.575 1 70.062 69.562 70.562 3.4866 0 0 0 0.40581 1 15221 15221 2.8892 0 1 + 53756 29894 33496 33514 62024 62024 0.01788379757340408 WGHPLPNETL 10 Unmodified _WGHPLPNETL_ 0 0 0 ENST00000375050.5_1_6:32153594-32154113:-|nuORF ENST00000375050.5_1_6:32153594-32154113:-|nuORF ENST00000375050.5_1_6:32153594-32154113:-|nuORF MSMS UPN47_class_I_Rep_2 3 582.295166015625 2 582.29583 1162.57711 NaN NaN NaN NaN NaN NaN NaN 44.989 1 48.345 47.845 48.845 3.3556 0 0 0 0.53105 1 9437 9437 1.4819 0 1 53757 6437 33497 33515 62025 62025 0.002322438462442733 WGILMILG 8 Unmodified _WGILMILG_ 0 0 0 REV__ENST00000563340.1_1_16:84456067-84459408:+|nuORF REV__ENST00000563340.1_1_16:84456067-84459408:+|nuORF MSMS UPN47_class_I_Rep_3 4 451.7632751464844 2 451.762049 901.509546 NaN NaN NaN NaN NaN NaN NaN 70.301 1 73.512 73.012 74.012 3.2113 0 0 0 0.40581 1 17189 17189 2.8892 0 1 + 53758 17738 33498 33516 62026 62026 0.05485122381742258 WGIMLVYLF 9 Unmodified _WGIMLVYLF_ 0 0 0 L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 571.3092041015625 2 571.309364 1140.60417 0.32899 0.00018796 1.6622 0.00094962 1.9912 0.0011376 571.3099640505363 68.541 0.19492 71.906 71.797 71.992 3.3646 22 13 2 0 0 0 0.2896 1 16556 16556 14.582 0 1 83313 53759 8692 33499 33517 62027 62027 0.03949636133052081 WGIMLVYLF 9 Unmodified _WGIMLVYLF_ 0 0 0 L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 571.3096923828125 2 571.309364 1140.60417 0.39755 0.00022712 1.7535 0.0010018 2.151 0.0012289 571.3101053803857 68.952 0.50582 72.221 71.914 72.419 3.2696 51 42 2 0 0 0 0.37662 2 16742 16710;16742 9.3474 0 1 115590 53760 8692 33499 33517 62028;62029 62029 0.03949636133052081 WGIMLVYLF 9 Unmodified _WGIMLVYLF_ 0 0 0 L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.8125 2 571.309364 1140.60417 0.4434 0.00025332 1.9928 0.0011385 2.4362 0.0013918 571.3101567930071 69.009 0.46992 72.213 71.947 72.417 3.2044 45 35 2 0 0 0 0.19841 3 16784 16784;16804;16842 20.871 0 1 84294 53761 8692 33499 33517 62030;62031;62032 62030 0.03949636133052081 WGIMLVYLF 9 Unmodified _WGIMLVYLF_ 0 0 0 L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense L1M2_dup4863|chr9:41050456-41052616:-|1.6913807701084982|0.3687555330492088|2.2|151.0|91|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 571.3108520507812 2 571.309364 1140.60417 0.4434 0.00025332 1.9928 0.0011385 2.4362 0.0013918 571.3101567930071 69.009 0.46992 72.213 71.947 72.417 3.2044 45 35 2 0 0 0 0.10758 1 16842 16842 14.582 0 1 84294 53762 8692 33499 33517 62033 62033 0.03949636133052081 WGKDIPVW 8 Unmodified _WGKDIPVW_ 0 0 0 REV__HERVL-int_dup374|chr3:17593199-17594845:+|2.790928145523262|0.0148231048771447|7.56|151.0|35|2|sense REV__HERVL-int_dup374|chr3:17593199-17594845:+|2.790928145523262|0.0148231048771447|7.56|151.0|35|2|sense MSMS UPN48_class_I_Rep_1 5 500.7803649902344 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 28.068 1 31.625 31.125 32.125 3.5571 0 0 0 0.40738 1 3706 3706 0.79363 0 1 + 53763 23886 33500 33518 62034 62034 0.018023926226987896 WGKGAWRR 8 Unmodified _WGKGAWRR_ 0 0 0 L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|53|2|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|53|2|sense L1MA3_dup823|chr2:63986102-63988443:-|1.5622672048828798|0.0675638698162132|4.53|151.0|53|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 508.7854919433594 2 508.780485 1015.54642 -0.27496 -0.0001399 0.976 0.00049657 0.70104 0.00035668 508.78095905578255 14.792 0.30755 18.267 18.136 18.444 3.475 74 33 3 0 0 0 0.82752 1 692 692 0.79363 0 1 70176 53764 9642 33501 33519 62035 62035 0.03926555042517066 WGKIKFRY 8 Unmodified _WGKIKFRY_ 0 0 0 REV__L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|63|3|sense REV__L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|63|3|sense MSMS UPN48_class_I_Rep_2 6 549.3182983398438 2 549.316369 1096.61818 NaN NaN NaN NaN NaN NaN NaN 91.602 1 95.358 94.858 95.858 3.7554 0 0 0 0.40625 1 21811 21811 2.3027 0 1 + 53765 30197 33502 33520 62036 62036 0.07374049676354844 WGKLKALPL 9 Unmodified _WGKLKALPL_ 0 0 0 L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense L1PB3_dup1873|chr9:96845651-96849093:+|2.052254865192655|0.4981705448741215|2.04|151.0|25|1|sense MSMS UPN47_class_I_Rep_3 4 513.3265380859375 2 513.328945 1024.64334 NaN NaN NaN NaN NaN NaN NaN 88.625 1 92.018 91.518 92.518 3.3931 0 0 0 0.39428 1 22230 22230 2.0598 1.3694 1 53766 15258 33503 33521 62037 62037 0.13200104478937646 WGKRLQGF 8 Unmodified _WGKRLQGF_ 0 0 0 REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|251|2|anti-sense REV__HERVH48-int_dup17|chr2:142931427-142936889:-|3.5758497807631064|0.3484917325531352|3.36|150.0|251|2|anti-sense MSMS UPN47_class_I_Rep_2 3 496.27740478515625 2 496.277244 990.539935 NaN NaN NaN NaN NaN NaN NaN 57.058 1 60.359 59.859 60.859 3.3009 0 0 0 0.40604 1 13109 13109 2.5775 0 1 + 53767 23706 33504 33522 62038 62038 0.044286170911504996 WGKVRKLL 8 Unmodified _WGKVRKLL_ 0 0 0 ENSG00000109775|ENST00000264689|UFSP2 ENSG00000109775|ENST00000264689|UFSP2 ENSG00000109775|ENST00000264689|UFSP2 MSMS UPN47_class_I_Rep_1 2 500.31884765625 2 500.326737 998.63892 NaN NaN NaN NaN NaN NaN NaN 16.92 1 20.442 19.942 20.942 3.5224 0 0 0 0.40625 1 1174 1174 2.3027 0 1 53768 1909 33505 33523 62039 62039 0.1395464005604481 WGLFTTYH 8 Unmodified _WGLFTTYH_ 0 0 0 REV__LTR60_dup35|chr19:11865173-11865529:-|2.808125861941379|0.4405220270547518|2.67|151.0|5|1|sense REV__LTR60_dup35|chr19:11865173-11865529:-|2.808125861941379|0.4405220270547518|2.67|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 512.7477416992188 2 512.747985 1023.48142 0.25405 0.00013026 -0.1531 -7.8504E-05 0.10094 5.1759E-05 512.7477974229274 75.228 0.63823 78.632 78.254 78.893 3.4034 96 57 2 0 0 0 0.82752 1 18632 18632 0.79363 0 1 151470 + 53769 30986 33506 33524 62040 62040 -0.029384842740228123 WGLHCHSE 8 Unmodified _WGLHCHSE_ 0 0 0 REV__AluJb_dup38232|chr5:138571961-138572234:-|1.1267927742535362|0.0800486531308643|3.82|151.0|16|2|anti-sense REV__AluJb_dup38232|chr5:138571961-138572234:-|1.1267927742535362|0.0800486531308643|3.82|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 484.705810546875 2 484.705794 967.397035 NaN NaN NaN NaN NaN NaN NaN 119.85 1 123.45 122.95 123.95 3.6036 0 0 0 0.40738 1 29799 29799 0.79363 0 1 + 53770 16941 33507 33525 62041 62041 -0.08796758362404944 WGLHLLKP 8 Unmodified _WGLHLLKP_ 0 0 0 THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|55|1|anti-sense;THE1B-int_dup2033|chr7:39661260-39662852:-|2.125912184162178|0.0569500638110681|5.22|151.0|59|1|anti-sense;THE1B-int_dup980|chr4:2477812-2479389:+|2.346790818525541|0.2838359240627188|3.05|151.0|77|3|anti-sense;THE1C-int_dup1795|chr22:31847751-31849274:-|1.1840998597196897|0.0189566031719169|5.96|151.0|70|2|anti-sense THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|55|1|anti-sense THE1C-int_dup55|chr1:108173552-108175120:+|1.188477490322768|0.1082807996776532|3.46|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_1 5 482.29254150390625 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 32.313 1 35.839 35.339 36.339 3.5266 0 0 0 0.40738 1 4899 4899 0.79363 0 1 53771 32901 33508 33526 62042 62042 0.08738975756318723 WGLHYPDT 8 Unmodified _WGLHYPDT_ 0 0 0 L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense MSMS UPN47_class_I_Rep_1 2 494.7195739746094 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 118.19 1 121.8 121.3 122.3 3.6036 0 0 0 0.40604 1 29323 29323 2.5775 0 1 53772 8885 33509 33527 62043 62043 -0.04919361170709635 WGLHYPDT 8 Unmodified _WGLHYPDT_ 0 0 0 L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense MSMS UPN47_class_I_Rep_3 4 494.7198486328125 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 23.475 1 26.826 26.326 27.326 3.3503 0 0 0 0.40738 1 2992 2992 0.79363 0 1 53773 8885 33509 33527 62044 62044 -0.04919361170709635 WGLHYPDT 8 Unmodified _WGLHYPDT_ 0 0 0 L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense L1M4_dup2083|chr2:108821946-108823411:+|1.515763650471898|0.1304153124165471|3.54|151.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 494.71875 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 113.88 1 117.51 117.01 118.01 3.6314 0 0 0 0.40738 1 27674 27674 0.79363 0 1 53774 8885 33509 33527 62045 62045 -0.04919361170709635 WGLIILPRVV 10 Unmodified _WGLIILPRVV_ 0 0 0 AluJb_dup114126|chr19:4912757-4913053:-|1.7524539333629392|0.0443791960152352|5.3|151.0|20|3|anti-sense AluJb_dup114126|chr19:4912757-4913053:-|1.7524539333629392|0.0443791960152352|5.3|151.0|20|3|anti-sense AluJb_dup114126|chr19:4912757-4913053:-|1.7524539333629392|0.0443791960152352|5.3|151.0|20|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 583.3768310546875 2 583.376426 1164.7383 0.47196 0.00027533 1.2688 0.00074016 1.7407 0.0010155 583.3767972056605 49.25 0.033783 49.25 49.227 49.261 0 6 3 2 0 0 0 0.56281 1 10327 10327 1.8442 0.19162 1 206970 53775 21 33510 33528 62046 62046 0.16252037950107479 WGLYFVFG 8 Unmodified _WGLYFVFG_ 0 0 0 REV__nc|ENSG00000110911|P49281-5|SLC11A2 REV__nc|ENSG00000110911|P49281-5|SLC11A2 MSMS UPN48_class_I_Rep_3 7 494.7484130859375 2 494.749996 987.485439 NaN NaN NaN NaN NaN NaN NaN 61.149 1 64.662 64.162 65.162 3.5129 0 0 0 0.40581 1 13489 13489 2.8892 0.58649 1 + 53776 18442 33511 33529 62047 62047 -0.00880394780278948 WGNKHFVFP 9 Unmodified _WGNKHFVFP_ 0 0 0 ENST00000551269.1_1_12:50036449-50036898:+|nuORF ENST00000551269.1_1_12:50036449-50036898:+|nuORF ENST00000551269.1_1_12:50036449-50036898:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 566.28857421875 2 566.290351 1130.56615 0.48063 0.00027218 -1.489 -0.00084321 -1.0084 -0.00057103 566.2894445523589 71.258 0.12286 74.808 74.769 74.892 3.5505 15 11 2 0 0 0 0.12444 1 16635 16635 2.0598 0.21551 1 88793 53777 7399 33512 33530 62048 62048 0.006088862626029368 WGPLRALNRR 10 Unmodified _WGPLRALNRR_ 0 0 0 REV__FLAM_C_dup3927|chr2:237761235-237761362:+|2.039976317444167|0.2025027125977359|3.33|151.0|9|3|anti-sense REV__FLAM_C_dup3927|chr2:237761235-237761362:+|2.039976317444167|0.2025027125977359|3.33|151.0|9|3|anti-sense MSMS UPN48_class_I_Rep_3 7 619.868896484375 2 619.86508 1237.71561 NaN NaN NaN NaN NaN NaN NaN 88.359 1 92.17 91.67 92.67 3.8104 0 0 0 0.53105 1 20973 20973 1.6526 1.1943 1 + 53778 23319 33513 33531 62049 62049 0.10625831605193525 WGPRRARRLT 10 Unmodified _WGPRRARRLT_ 0 0 0 REV__ENST00000261427.9_1_4:39699686-39699818:+|nuORF REV__ENST00000261427.9_1_4:39699686-39699818:+|nuORF MSMS UPN47_class_I_Rep_2 3 634.8739624023438 2 634.875979 1267.73741 NaN NaN NaN NaN NaN NaN NaN 89.869 1 93.326 92.826 93.826 3.4571 0 0 0 0.53105 1 22319 22319 1.4819 0 1 + 53779 21557 33514 33532 62050 62050 0.114246363537859 WGQLDQSH 8 Unmodified _WGQLDQSH_ 0 0 0 REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|31|3|sense REV__MER52A_dup1232|chr17:29837433-29839428:+|3.328932397672697|0.0514430481216536|6.02|151.0|31|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.72271728515625 2 485.722498 969.430444 -0.32431 -0.00015752 0.55341 0.00026881 0.2291 0.00011128 485.72266408392267 25.803 0.71147 29.566 29.246 29.958 3.7624 95 63 3 0 0 0 0.82752 1 3672 3672 0.69038 0 1 84958 + 53780 31407 33515 33533 62051 62051 -0.05549433318844876 WGQLWGGK 8 Unmodified _WGQLWGGK_ 0 0 0 REV__ENSG00000060558.4,GNA15,chr19,+,I5.1,3151836,3155822|30|28.4|1|intron REV__ENSG00000060558.4,GNA15,chr19,+,I5.1,3151836,3155822|30|28.4|1|intron MSMS UPN48_class_I_Rep_1 5 466.2432861328125 2 466.24287 930.471186 NaN NaN NaN NaN NaN NaN NaN 89.47 1 93.095 92.595 93.595 3.6255 0 0 0 0.40746 1 21487 21487 0.69038 0 1 + 53781 17722 33516 33534 62052 62052 0.0031695279143377775 WGQRKKSK 8 Unmodified _WGQRKKSK_ 0 0 0 REV__nc|ENSG00000076685|P49902-2|NT5C2;REV__ENSG00000144130|ENST00000688554|NT5DC4 REV__ENSG00000144130|ENST00000688554|NT5DC4 MSMS UPN47_class_I_Rep_2 3 509.30084228515625 2 509.30125 1016.58795 NaN NaN NaN NaN NaN NaN NaN 65.059 1 68.315 67.815 68.815 3.2556 0 0 0 0.40746 1 15540 15540 0.69038 0 1 + 53782 17869;19478 33517 33535 62053 62053 0.08031691011183284 WGQTDTSHG 9 Unmodified _WGQTDTSHG_ 0 0 0 L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|126|3|sense L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|126|3|sense L1PA3_dup373|chr1:116051914-116058065:+|4.028424634587142|0.2203545243875965|4.19|150.0|126|3|sense MSMS UPN48_class_I_Rep_1 5 494.71759033203125 2 494.709588 987.404623 NaN NaN NaN NaN NaN NaN NaN 26.49 1 30.057 29.557 30.557 3.5667 0 0 0 0.3967 1 3261 3261 1.4819 0.68827 1 53783 14257 33518 33536 62054 62054 -0.08958327561117585 WGRGTPRSVV 10 Unmodified _WGRGTPRSVV_ 0 0 0 nc|ENSG00000186919|Q401N2-2|ZACN nc|ENSG00000186919|Q401N2-2|ZACN nc|ENSG00000186919|Q401N2-2|ZACN MSMS UPN48_class_I_Rep_3 7 557.8074951171875 2 557.809439 1113.60433 NaN NaN NaN NaN NaN NaN NaN 116.85 1 120.48 119.98 120.98 3.6312 0 0 0 0.53105 1 27808 27808 1.3295 0.5359 1 53784 16783 33519 33537 62055 62055 0.052067721772800724 WGRIGGRGYL 10 Unmodified _WGRIGGRGYL_ 0 0 0 HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|20|2|sense HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|20|2|sense HAL1_dup3427|chr2:161168825-161169729:+|1.067119585053012|0.0837956710945419|3.67|151.0|20|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 567.8106079101562 2 567.811982 1133.60941 0.41446 0.00023533 -1.4437 -0.00081975 -1.0292 -0.00058442 567.8109964307176 68.888 0.11176 68.888 68.823 68.935 0 15 10 2 0 0 0 0.54466 1 15754 15754 6.2058 0.9089 1 142500 53785 7878 33520 33538 62056 62056 0.04795076039886226 WGRKIVQPL 9 Unmodified _WGRKIVQPL_ 0 0 0 L1MC1_dup2178|chr3:16340852-16341553:+|1.266265834739058|0.3486879415166081|1.86|151.0|9|2|sense L1MC1_dup2178|chr3:16340852-16341553:+|1.266265834739058|0.3486879415166081|1.86|151.0|9|2|sense L1MC1_dup2178|chr3:16340852-16341553:+|1.266265834739058|0.3486879415166081|1.86|151.0|9|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8349609375 2 548.834926 1095.6553 0.1496 8.2106E-05 0.46127 0.00025316 0.61087 0.00033526 548.8350157335511 30.7 0.10549 30.7 30.661 30.767 0 8 6 2 0 0 0 0.48643 1 5041 5041 2.0598 2.0598 1 112350 53786 11124 33521 33539 62057 62057 0.11129721222141598 WGRPRGPR 8 Unmodified _WGRPRGPR_ 0 0 0 REV__ENST00000568394.1_1_16:1030490-1030955:-|nuORF REV__ENST00000568394.1_1_16:1030490-1030955:-|nuORF MSMS UPN46_class_I_Rep_3 1 491.4258117675781 2 491.278109 980.541666 NaN NaN NaN NaN NaN NaN NaN 38.748 1 38.748 38.248 39.248 0 0 0 0 0.40625 1 7398 7398 2.3027 0 1 + 53787 23075 33522 33540 62058 62058 0.05061670899749515 WGRRHEAF 8 Unmodified _WGRRHEAF_ 0 0 0 ENST00000605849.1_1_4:96470971-96471193:+|nuORF ENST00000605849.1_1_4:96470971-96471193:+|nuORF ENST00000605849.1_1_4:96470971-96471193:+|nuORF MSMS UPN48_class_I_Rep_1 5 529.76708984375 2 529.767575 1057.5206 NaN NaN NaN NaN NaN NaN NaN 117.82 1 121.44 120.94 121.94 3.6215 0 0 0 0.40738 1 28719 28719 0.79363 0 1 53788 7677 33523 33541 62059 62059 -0.005863391997763756 WGRVKRHS 8 Unmodified _WGRVKRHS_ 0 0 0 REV__L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|23|2|sense REV__L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 513.3165283203125 2 513.291217 1024.56788 NaN NaN NaN NaN NaN NaN NaN 50.033 1 53.727 53.227 54.227 3.6946 0 0 0 0.40643 1 10173 10173 2.0598 0.21551 1 + 53789 28579 33524 33542 62060 62060 0.0565794007122804 WGSWRPQL 8 Unmodified _WGSWRPQL_ 0 0 0 L1PA14_dup2461|chr12:46636908-46643375:+|3.6611702218720006|0.1377180874454446|4.73|151.0|394|3|anti-sense L1PA14_dup2461|chr12:46636908-46643375:+|3.6611702218720006|0.1377180874454446|4.73|151.0|394|3|anti-sense L1PA14_dup2461|chr12:46636908-46643375:+|3.6611702218720006|0.1377180874454446|4.73|151.0|394|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.2670288085938 2 515.266876 1028.5192 0.38597 0.00019888 0.24004 0.00012369 0.62601 0.00032256 515.2669522167721 74.419 0.17446 77.97 77.843 78.018 3.5505 55 22 3 0 0 0 0.82752 1 17419 17419 7.2892 7.2892 1 640860 53790 13843 33525 33543 62061 62061 0.00608026711461207 WGTAWFYI 8 Unmodified _WGTAWFYI_ 0 0 0 MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 522.2923583984375 2 522.252903 1042.49125 0.46591 0.00024332 -1.6792 -0.00087699 -1.2133 -0.00063367 522.2524002553872 58.864 0.36232 62.362 62.077 62.439 3.4987 37 21 2 0 0 0 0.72333 1 12849 12849 2.5775 0.27475 1 113120 53791 16042 33526 33544 62062 62062 -0.028292962686236933 WGTAWFYI 8 Unmodified _WGTAWFYI_ 0 0 0 MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 522.252903 1042.49125 0.41244 0.0002154 -1.7058 -0.00089086 -1.2934 -0.00067547 522.2523488172517 58.838 0.43012 62.325 62.164 62.594 3.487 0.025169 0.00017125 NaN 2.5775 43 27 2 NaN NaN NaN NaN 0 NaN NaN 0 69957 53792 16042 33526 33544 -0.028292962686236933 WGTAWFYI 8 Unmodified _WGTAWFYI_ 0 0 0 MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|44|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 522.252903 1042.49125 0.36283 0.00018949 -2.1676 -0.0011321 -1.8048 -0.00094257 522.7529558417481 58.688 0.30103 62.211 62.097 62.398 3.5231 -0.088067 -0.00031114 NaN 2.5775 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 106920 53793 16042 33526 33544 -0.028292962686236933 WGTCEYFL 8 Unmodified _WGTCEYFL_ 0 0 0 L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|279|3|anti-sense L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|279|3|anti-sense L1MA4A_dup3157|chr9:3652248-3656828:-|1.1491070410142914|0.0897858347566105|3.68|150.0|279|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 510.2978210449219 2 509.720578 1017.4266 0.38468 0.00019608 -0.83938 -0.00042785 -0.4547 -0.00023177 509.71996167992546 60.097 0.31767 63.57 63.503 63.82 3.4737 24 20 2 0 0 0 0.72333 1 13317 13317 2.5775 0 1 83363 53794 9778 33527 33545 62063 62063 -0.08141239136932654 WGTHPTMRGR 10 Unmodified _WGTHPTMRGR_ 0 0 0 REV__L1PA6_dup5507|chr18:13082458-13084761:-|1.8799553028741969|0.0647193980290466|4.86|151.0|38|2|sense REV__L1PA6_dup5507|chr18:13082458-13084761:-|1.8799553028741969|0.0647193980290466|4.86|151.0|38|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.798828125 2 599.798549 1197.58254 0.19255 0.00011549 0.27363 0.00016412 0.46618 0.00027961 599.798700897189 47.762 0.39552 51.456 51.356 51.751 3.6943 30 23 2 0 0 0 0.56354 1 10232 10232 1.3295 0 1 106720 + 53795 29939 33528 33546 62064 62064 -0.008343558429714903 WGVAEFLG 8 Unmodified _WGVAEFLG_ 0 0 0 L1MEc_dup14711|chr13:112846067-112846853:-|1.2118348797251792|0.0918662542273112|3.72|151.0|41|3|anti-sense L1MEc_dup14711|chr13:112846067-112846853:-|1.2118348797251792|0.0918662542273112|3.72|151.0|41|3|anti-sense L1MEc_dup14711|chr13:112846067-112846853:-|1.2118348797251792|0.0918662542273112|3.72|151.0|41|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 439.72357177734375 2 439.723978 877.433404 -1.1182 -0.0004917 0.36891 0.00016222 -0.74929 -0.00032948 439.72397832929965 21.081 0.56709 24.431 24.155 24.722 3.3496 71 51 2 0 0 0 0.82752 1 2274 2274 0.79363 0 1 46444 53796 13027 33529 33547 62065 62065 -0.01021558194042882 WGVAKWVV 8 Unmodified _WGVAKWVV_ 0 0 0 REV__nc|ENSG00000116688|O95140-2|MFN2 REV__nc|ENSG00000116688|O95140-2|MFN2 MSMS UPN47_class_I_Rep_3 4 472.75567626953125 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 35.915 1 39.17 38.67 39.67 3.2547 0 0 0 0.40738 1 6710 6710 0.79363 0 1 + 53797 18611 33530 33548 62066 62066 0.05395000347948553 WGVMIILLF 9 Unmodified _WGVMIILLF_ 0 0 0 REV__L1MA5_dup24|chr1:36048315-36048712:+|1.812075260218271|0.0365998218812637|5.63|151.0|17|1|anti-sense REV__L1MA5_dup24|chr1:36048315-36048712:+|1.812075260218271|0.0365998218812637|5.63|151.0|17|1|anti-sense MSMS UPN47_class_I_Rep_3 4 546.3207397460938 2 546.319731 1090.62491 NaN NaN NaN NaN NaN NaN NaN 79.7 1 82.995 82.495 83.495 3.295 0 0 0 0.082921 1 19935 19935 28.173 0 1 + 53798 25373 33531 33549 62067 62067 0.08322226512746056 WGVRRLLFEV 10 Unmodified _WGVRRLLFEV_ 0 0 0 L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|368|3|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|368|3|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|368|3|anti-sense MSMS UPN48_class_I_Rep_1 5 637.87255859375 2 637.87204 1273.72953 NaN NaN NaN NaN NaN NaN NaN 98.116 1 101.72 101.22 102.22 3.6065 0 0 0 0.53105 1 23670 23670 1.4819 0 1 53799 12021 33532 33550 62068 62068 0.10361064313656243 WGWLWPMW 8 Unmodified _WGWLWPMW_ 0 0 0 L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|107|3|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|107|3|anti-sense L1PBa_dup1184|chr9:27023730-27025162:+|1.2748278234702763|0.2300563287302091|2.47|151.0|107|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2686157226562 2 581.270573 1160.52659 -0.059937 -3.484E-05 -2.6517 -0.0015413 -2.7116 -0.0015762 581.2681739331767 33.218 0.077423 36.916 36.878 36.955 3.6983 8 5 2 0 0 0 0.82752 1 5833 5833 0.79363 0.10326 1 49286 53800 15359 33533 33551 62069 62069 -0.04724957012444975 WGWWLKLWV 9 Unmodified _WGWWLKLWV_ 0 0 0 REV__ENSG00000160058.19,BSDC1,chr1,-,I2.1,32384049,32386420|27|11.56|5|intron REV__ENSG00000160058.19,BSDC1,chr1,-,I2.1,32384049,32386420|27|11.56|5|intron MSMS UPN47_class_I_Rep_3 4 637.3480224609375 2 637.347669 1272.68079 NaN NaN NaN NaN NaN NaN NaN 78.013 1 81.295 80.795 81.795 3.2816 0 0 0 0.40038 1 19439 19439 0.6015 0.076735 1 + 53801 19877 33534 33552 62070 62070 0.05535195744550947 WGYKTLHIK 9 Unmodified _WGYKTLHIK_ 0 0 0 REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|76|2|anti-sense REV__L1MB3_dup8524|chr9:92574264-92575531:+|1.0429495021782458|0.0073334686581994|7.15|150.0|76|2|anti-sense MSMS UPN48_class_I_Rep_2 6 573.3261108398438 2 573.326934 1144.63931 NaN NaN NaN NaN NaN NaN NaN 110.67 1 114.34 113.84 114.84 3.669 0 0 0 0.40038 1 26328 26328 0.6015 0 1 + 53802 25924 33535 33553 62071 62071 0.07278014985217851 WGYRAAQRWGF 11 Unmodified _WGYRAAQRWGF_ 0 0 0 ENST00000607680.5_1_X:114753986-114796820:-|nuORF ENST00000607680.5_1_X:114753986-114796820:-|nuORF ENST00000607680.5_1_X:114753986-114796820:-|nuORF MSMS UPN46_class_I_Rep_3 1 466.5668640136719 3 466.566906 1396.67889 NaN NaN NaN NaN NaN NaN NaN 103.02 1 103.02 102.52 103.52 0 0 0 0 0.38417 1 25141 25141 0 0 1 53803 7694 33536 33554 62072 62072 -0.003584650113907628 WHAHVDKVT 9 Unmodified _WHAHVDKVT_ 0 0 0 ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 MSMS UPN47_class_I_Rep_2 3 546.7823486328125 2 546.78289 1091.55123 NaN NaN NaN NaN NaN NaN NaN 35.558 1 38.97 38.47 39.47 3.4114 0 0 0 0.39428 1 6571 6571 2.0598 0 1 53804 4917 33537 33555 62073 62073 0.009113943946204017 WHAISRTS 8 Unmodified _WHAISRTS_ 0 0 0 nc|ENSG00000175518|Q8IYU4-2|UBQLNL;ENSG00000175518|ENST00000380184|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL MSMS UPN48_class_I_Rep_1 5 479.2490234375 2 479.248683 956.482814 NaN NaN NaN NaN NaN NaN NaN 26.705 1 30.268 29.768 30.768 3.5629 0 0 0 0.40738 1 3324 3324 0.79363 0 1 53805 4729 33538 33556 62074 62074 0.00283149814765693 WHASGGFG 8 Unmodified _WHASGGFG_ 0 0 0 REV__ENST00000584377.5_1_17:80211530-80212190:-|nuORF REV__ENST00000584377.5_1_17:80211530-80212190:-|nuORF MSMS UPN46_class_I_Rep_3 1 409.6831359863281 2 409.682645 817.350737 NaN NaN NaN NaN NaN NaN NaN 77.035 1 77.035 76.535 77.535 0 0 0 0 0.40798 1 17990 17990 0 0 1 + 53806 23136 33539 33557 62075 62075 -0.06524455202179524 WHCLGCWR 8 Unmodified _WHCLGCWR_ 0 0 0 AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 530.7347412109375 2 530.733832 1059.45311 NaN NaN NaN NaN NaN NaN NaN 26.257 1 30.02 29.52 30.52 3.7624 0 0 0 0.40738 1 3731 3731 0.79363 0 1 53807 4 33540 33558 62076 62076 -0.07423828726609827 WHCLGCWR 8 Unmodified _WHCLGCWR_ 0 0 0 AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 530.7342529296875 2 530.733832 1059.45311 NaN NaN NaN NaN NaN NaN NaN 27.542 1 31.105 30.605 31.605 3.5629 0 0 0 0.40738 1 3561 3561 0.79363 0 1 53808 4 33540 33558 62077 62077 -0.07423828726609827 WHCLGCWR 8 Unmodified _WHCLGCWR_ 0 0 0 AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant MSMS UPN48_class_I_Rep_2 6 530.73583984375 2 530.733832 1059.45311 NaN NaN NaN NaN NaN NaN NaN 18.306 1 21.957 21.457 22.457 3.6509 0 0 0 0.40738 1 1206 1206 0.79363 0.10326 1 53809 4 33540 33558 62078 62078 -0.07423828726609827 WHCLGCWR 8 Unmodified _WHCLGCWR_ 0 0 0 AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant AKAP1|p.S7Cfs*42|1|0.4|ENSG00000121057|chr17:57105484-57105484|C/-|frameshift_variant MSMS UPN48_class_I_Rep_3 7 530.73486328125 2 530.733832 1059.45311 NaN NaN NaN NaN NaN NaN NaN 21.413 1 25.127 24.627 25.627 3.7144 0 0 0 0.40738 1 2004 2004 0.79363 0 1 53810 4 33540 33558 62079 62079 -0.07423828726609827 WHCSWHLQ 8 Unmodified _WHCSWHLQ_ 0 0 0 L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|2|1|sense L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|2|1|sense L1PA15_dup3096|chr6:73051165-73055082:+|7.939101647691952|0.0136234789841723|9.19|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.7435913085938 2 548.742711 1095.47087 -0.024867 -1.3646E-05 1.2255 0.00067247 1.2006 0.00065882 548.7434063520599 30.272 0.52625 34.017 33.812 34.338 3.7449 54 38 2 0 0 0 0.82752 1 4918 4918 5.2307 0.90143 1 104630 53811 13920 33541 33559 62080 62080 -0.0730479020007806 WHCWVKWY 8 Unmodified _WHCWVKWY_ 0 0 0 L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|242|2|anti-sense;L1PA7_dup4|chr1:236186352-236192792:-|2.1480866598305|0.2888034591557181|2.89|151.0|301|3|anti-sense;L1PA8A_dup1978|chr12:62199193-62202346:-|1.524352416984455|0.146144707509768|3.38|151.0|149|2|anti-sense L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|242|2|anti-sense L1PA6_dup5204|chr15:42764133-42770256:+|1.4040836999022148|0.0525701509388603|4.74|151.0|242|2|anti-sense MSMS UPN48_class_I_Rep_2 6 604.27685546875 2 604.278929 1206.54331 NaN NaN NaN NaN NaN NaN NaN 29.365 1 32.996 32.496 33.496 3.6316 0 0 0 0.40738 1 4161 4161 0.79363 0.19213 1 53812 14661 33542 33560 62081 62081 -0.05170456126506906 WHEKFVPVVDT 11 Unmodified _WHEKFVPVVDT_ 0 0 0 REV__ENST00000465121.5_1_3:52018080-52021658:+|nuORF REV__ENST00000465121.5_1_3:52018080-52021658:+|nuORF MSMS UPN47_class_I_Rep_2 3 453.2319030761719 3 452.903072 1355.68739 NaN NaN NaN NaN NaN NaN NaN 27.966 1 31.465 30.965 31.965 3.4986 0 0 0 0.38417 1 4274 4274 0.50596 0.09769 1 + 53813 21340 33543 33561 62082 62082 0.02377044114587079 WHEMVVSRCGF 11 Unmodified _WHEMVVSRCGF_ 0 0 0 L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|180|1|anti-sense L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|180|1|anti-sense L1PA7_dup7510|chr9:100177037-100183286:+|14.688797248385432|0.122209282924474|6.91|151.0|180|1|anti-sense MSMS UPN48_class_I_Rep_2 6 450.8735656738281 3 450.874242 1349.6009 NaN NaN NaN NaN NaN NaN NaN 98.557 1 102.33 101.83 102.83 3.7707 0 0 0 0.38417 1 23412 23412 1.3296 0.31607 1 53814 14881 33544 33562 62083 62083 -0.05991981983243022 WHEQYNKL 8 Unmodified _WHEQYNKL_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MSMS UPN46_class_I_Rep_3 1 559.2743530273438 2 559.274898 1116.53524 NaN NaN NaN NaN NaN NaN NaN 44.286 1 44.286 43.786 44.786 0 0 0 0 0.40746 1 8912 8912 0.69038 0 1 + 53815 18418 33545 33563 62084 62084 -0.018363118422939806 WHFAHSQTS 9 Unmodified _WHFAHSQTS_ 0 0 0 Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|92|1|anti-sense Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|92|1|anti-sense Tigger1_dup591|chr1:165866966-165869389:-|2.2021798464187308|0.0105523144584798|7.71|151.0|92|1|anti-sense MSMS UPN47_class_I_Rep_2 3 550.7489013671875 2 550.749047 1099.48354 NaN NaN NaN NaN NaN NaN NaN 66.383 1 69.642 69.142 70.142 3.2588 0 0 0 0.39326 1 15945 15945 2.3027 0.4585 1 53816 33136 33546 33564 62085 62085 -0.0622205553618187 WHFGEWTE 8 Unmodified _WHFGEWTE_ 0 0 0 ENSG00000077274|ENST00000324068|CAPN6 ENSG00000077274|ENST00000324068|CAPN6 ENSG00000077274|ENST00000324068|CAPN6 MSMS UPN47_class_I_Rep_1 2 546.232421875 2 546.232699 1090.45084 NaN NaN NaN NaN NaN NaN NaN 118.89 1 122.49 121.99 122.99 3.6036 0 0 0 0.40738 1 29518 29518 0.79363 0 1 53817 1171 33547 33565 62086 62086 -0.09076262659050371 WHGLPKWRR 9 Unmodified _WHGLPKWRR_ 0 0 0 REV__LTR33A__dup1446|chr16:81515694-81516190:+|1.1452601270383036|0.0187147953992311|5.94|151.0|9|1|anti-sense REV__LTR33A__dup1446|chr16:81515694-81516190:+|1.1452601270383036|0.0187147953992311|5.94|151.0|9|1|anti-sense MSMS UPN47_class_I_Rep_2 3 618.3492431640625 2 618.349066 1234.68358 NaN NaN NaN NaN NaN NaN NaN 58.635 1 61.916 61.416 62.416 3.2818 0 0 0 0.40038 1 13588 13588 0.6015 0 1 + 53818 30903 33548 33566 62087 62087 0.07562463922045026 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 511.78167724609375 2 511.782162 1021.54977 0.25358 0.00012978 -1.246 -0.0006377 -0.99246 -0.00050792 511.78148242409014 82.393 0.14954 85.968 85.918 86.068 3.5753 20 16 2 0 0 0 0.82752 1 19677 19677 17.087 1.2394 1 68044 53819 257 33549 33567 62088 62088 0.039858050965108305 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MSMS UPN48_class_I_Rep_1 5 511.7814025878906 2 511.782162 1021.54977 NaN NaN NaN NaN NaN NaN NaN 82.611 1 86.186 85.686 86.686 3.5753 0 0 0 0.34139 1 19734 19734 24.21 1.0615 1 53820 257 33549 33567 62089 62089 0.039858050965108305 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.78131103515625 2 511.782162 1021.54977 NaN NaN NaN NaN NaN NaN NaN 82.152 1 85.821 85.321 86.321 3.669 0 0 0 0.37152 1 19510 19510 17.087 3.5787 1 53821 257 33549 33567 62090 62090 0.039858050965108305 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.7815856933594 2 511.782162 1021.54977 0.33062 0.0001692 -1.3337 -0.00068254 -1.003 -0.00051334 511.7811433514209 82.403 0.096848 86.11 86.047 86.144 3.7066 15 12 2 0 0 0 0.82752 1 19531 19531 24.21 2.4633 1 106360 53822 257 33549 33567 62091 62091 0.039858050965108305 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 511.78057861328125 2 511.782162 1021.54977 0.33037 0.00016908 -1.5622 -0.0007995 -1.2318 -0.00063042 511.78117738515857 82.537 0.14164 86.243 86.137 86.279 3.7066 29 18 2 0 0 0 0.82752 1 19562 19562 24.21 7.2677 1 72607 53823 257 33549 33567 62092 62092 0.039858050965108305 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 511.782162 1021.54977 0.25345 0.00012971 -1.7185 -0.00087947 -1.465 -0.00074976 511.7810111984515 82.309 0.05098 85.884 85.867 85.918 3.5753 -0.11287 -0.00033248 NaN 24.21 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 52289 53824 257 33549 33567 0.039858050965108305 WHHALVIF 8 Unmodified _WHHALVIF_ 0 0 0 AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense AluSq2_dup39064|chr11:117013209-117013495:+|1.254289798233926|0.0586604002907366|4.42|151.0|20|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 511.782162 1021.54977 0.33062 0.0001692 -1.3337 -0.00068254 -1.003 -0.00051334 511.7811433514209 82.403 0.096848 86.11 86.047 86.144 3.7066 0.11287 6.138E-05 NaN 24.21 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 106360 53825 257 33549 33567 0.039858050965108305 WHHIAVLI 8 Unmodified _WHHIAVLI_ 0 0 0 L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|310|3|anti-sense L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|310|3|anti-sense L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|310|3|anti-sense MSMS UPN47_class_I_Rep_1 2 494.791259765625 2 494.789987 987.565421 NaN NaN NaN NaN NaN NaN NaN 80.68 1 84.167 83.667 84.667 3.4874 0 0 0 0.37152 1 20106 20106 17.087 3.5787 1 53826 14647 33550 33568 62093 62093 0.071140916135505 WHHIAVLI 8 Unmodified _WHHIAVLI_ 0 0 0 L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|310|3|anti-sense L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|310|3|anti-sense L1PA6_dup4700|chr12:46736989-46743143:+|3.329090948398248|0.055996065413825|5.89|150.0|310|3|anti-sense MSMS UPN47_class_I_Rep_3 4 494.7914733886719 2 494.789987 987.565421 NaN NaN NaN NaN NaN NaN NaN 80.661 1 83.97 83.47 84.47 3.309 0 0 0 0.37152 1 20177 20177 17.087 3.5787 1 53827 14647 33550 33568 62094 62094 0.071140916135505 WHHIIKMF 8 Unmodified _WHHIIKMF_ 0 0 0 L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|122|3|anti-sense L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|122|3|anti-sense L1MA7_dup7356|chr15:71930127-71931964:-|2.714110247683573|0.07901645069599|5.1|151.0|122|3|anti-sense MSMS UPN46_class_I_Rep_3 1 556.2974243164062 2 556.297122 1110.57969 NaN NaN NaN NaN NaN NaN NaN 101.26 1 101.26 100.76 101.76 0 0 0 0 0.40746 1 24705 24705 0.69038 0 1 53828 10031 33551 33569 62095 62095 0.028824207701745763 WHIDGLLQ 8 Unmodified _WHIDGLLQ_ 0 0 0 REV__HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|1|1|sense REV__HERVK3-int_dup255|chr19:11854769-11858177:-|6.130216774144424|0.2136920949491043|4.84|150.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 491.052490234375 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 77.347 1 80.616 80.116 81.116 3.269 0 0 0 0.40738 1 19257 19257 0.79363 0 1 + 53829 23818 33552 33570 62096 62096 0.016932046173451454 WHIETDFGI 9 Unmodified _WHIETDFGI_ 0 0 0 L1MA3_dup6476|chr11:75932584-75934656:+|1.4073099160129756|0.0214932503551693|6.03|151.0|150|3|anti-sense L1MA3_dup6476|chr11:75932584-75934656:+|1.4073099160129756|0.0214932503551693|6.03|151.0|150|3|anti-sense L1MA3_dup6476|chr11:75932584-75934656:+|1.4073099160129756|0.0214932503551693|6.03|151.0|150|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.7701416015625 2 559.269281 1116.52401 0.43283 0.00024207 -0.095322 -5.3311E-05 0.3375 0.00018876 559.2691585062098 63.235 0.93264 66.744 66.33 67.262 3.5091 231 75 4 0 0 0 0.33654 1 14020 14020 11.64 0 1 2183000 53830 9603 33553 33571 62097 62097 -0.029591339364287705 WHIGIVEN 8 Unmodified _WHIGIVEN_ 0 0 0 REV__CON__P0C1U8 REV__CON__P0C1U8 MSMS UPN48_class_I_Rep_2 6 484.2525634765625 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 23.982 1 27.622 27.122 28.122 3.6397 0 0 0 0.40738 1 2709 2709 0.79363 0 1 + + 53831 17479 33554 33572 62098 62098 0.007729181002673613 WHIWATYEV 9 Unmodified _WHIWATYEV_ 0 0 0 REV__Tigger7_dup62|chr1:50631196-50631896:+|1.7950832226802351|0.0355173032053872|5.66|151.0|31|1|anti-sense REV__Tigger7_dup62|chr1:50631196-50631896:+|1.7950832226802351|0.0355173032053872|5.66|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.7905883789062 2 602.792924 1203.57129 NaN NaN NaN NaN NaN NaN NaN 53.653 1 57.236 56.736 57.736 3.5836 0 0 0 0.39518 1 11203 11203 1.8442 1.0506 1 + 53832 32812 33555 33573 62099 62099 -0.02234854665448438 WHKIFKTG 8 Unmodified _WHKIFKTG_ 0 0 0 REV__nc|ENSG00000188554|Q14596-2|NBR1 REV__nc|ENSG00000188554|Q14596-2|NBR1 MSMS UPN47_class_I_Rep_2 3 508.7865905761719 2 508.787444 1015.56034 NaN NaN NaN NaN NaN NaN NaN 14.739 1 18.126 17.626 18.626 3.3871 0 0 0 0.40753 1 640 640 0.6015 0 1 + 53833 20972 33556 33574 62100 62100 0.05317787750948355 WHKIVFFL 8 Unmodified _WHKIVFFL_ 0 0 0 L1MC4_dup13753|chrX:16753438-16753858:-|1.2429703810101969|0.1690484554059238|2.88|151.0|26|3|anti-sense L1MC4_dup13753|chrX:16753438-16753858:-|1.2429703810101969|0.1690484554059238|2.88|151.0|26|3|anti-sense L1MC4_dup13753|chrX:16753438-16753858:-|1.2429703810101969|0.1690484554059238|2.88|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_2 3 545.3169555664062 2 545.315838 1088.61712 NaN NaN NaN NaN NaN NaN NaN 80.653 1 84.022 83.522 84.522 3.3694 0 0 0 0.40738 1 20079 20079 0.79363 0 1 53834 11404 33557 33575 62101 62101 0.07635835307473826 WHKTRDKD 8 Unmodified _WHKTRDKD_ 0 0 0 L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|19|1|sense L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|19|1|sense L1MA9_dup11105|chr10:110949049-110951722:+|3.12208649699917|0.1356955638049992|4.52|151.0|19|1|sense MSMS UPN48_class_I_Rep_2 6 543.7430419921875 2 543.277972 1084.54139 NaN NaN NaN NaN NaN NaN NaN 113.76 1 117.42 116.92 117.92 3.663 0 0 0 0.40625 1 27162 27162 2.3027 0 1 53835 10090 33558 33576 62102 62102 0.0025020638922796934 WHLAIEKT 8 Unmodified _WHLAIEKT_ 0 0 0 REV__ENST00000428221.5_1_2:11586145-11586385:-|nuORF REV__ENST00000428221.5_1_2:11586145-11586385:-|nuORF MSMS UPN47_class_I_Rep_1 2 499.2762756347656 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 67.555 1 70.917 70.417 71.417 3.3611 0 0 0 0.40738 1 16252 16252 0.79363 0 1 + 53836 22278 33559 33577 62103 62103 0.04085777651414446 WHLEEWRL 8 Unmodified _WHLEEWRL_ 0 0 0 ENST00000600048.1_1_19:59082132-59084077:-|nuORF ENST00000600048.1_1_19:59082132-59084077:-|nuORF ENST00000600048.1_1_19:59082132-59084077:-|nuORF MSMS UPN47_class_I_Rep_1 2 584.797607421875 2 584.79854 1167.58253 NaN NaN NaN NaN NaN NaN NaN 76.498 1 79.913 79.413 80.413 3.4149 0 0 0 0.40746 1 18934 18934 0.69038 0 1 53837 7659 33560 33578 62104 62104 0.005439674287117668 WHLENRVTL 9 Unmodified _WHLENRVTL_ 0 0 0 L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|2|1|sense;L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|3|1|sense;L1PA3_dup230|chr1:85824941-85830944:-|1.0008554921107458|0.0286896170564863|5.12|148.0|75|2|sense L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|2|1|sense L1PA3_dup1710|chr3:38405401-38411538:+|1.029941967628341|0.4412645816697411|1.22|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 584.3468017578125 2 584.317097 1166.61964 NaN NaN NaN NaN NaN NaN NaN 102.23 1 105.85 105.35 106.35 3.6164 0 0 0 0.39428 1 24657 24657 2.0598 0 1 53838 14236 33561 33579 62105 62105 0.042996389744757835 WHLGLEDT 8 Unmodified _WHLGLEDT_ 0 0 0 ENST00000536311.5_1_20:62871939-62872287:+|nuORF ENST00000536311.5_1_20:62871939-62872287:+|nuORF ENST00000536311.5_1_20:62871939-62872287:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.2669372558594 2 485.735074 969.455596 NaN NaN NaN NaN NaN NaN NaN 26.832 1 30.395 29.895 30.895 3.5629 0 0 0 0.40738 1 3359 3359 0.79363 0 1 53839 7332 33562 33580 62106 62106 -0.03035378516290166 WHLGYSPE 8 Unmodified _WHLGYSPE_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2;ENST00000485545.5_2_7:73646438-73651717:-|nuORF ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MSMS UPN46_class_I_Rep_3 1 494.7189636230469 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 114.11 1 114.11 113.61 114.61 0 0 0 0 0.40738 1 28194 28194 0.79363 0 1 53840 903 33563 33581 62107 62107 -0.04919361170721004 WHLGYSPE 8 Unmodified _WHLGYSPE_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2;ENST00000485545.5_2_7:73646438-73651717:-|nuORF ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MSMS UPN46_class_I_Rep_3 1 494.7191467285156 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 116.96 1 116.96 116.46 117.46 0 0 0 0 0.40738 1 28975 28975 0.79363 0 1 53841 903 33563 33581 62108 62108 -0.04919361170721004 WHLGYSPE 8 Unmodified _WHLGYSPE_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2;ENST00000485545.5_2_7:73646438-73651717:-|nuORF ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MSMS UPN46_class_I_Rep_3 1 494.71826171875 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 117.31 1 117.31 116.81 117.81 0 0 0 0 0.40738 1 29075 29075 0.79363 0 1 53842 903 33563 33581 62109 62109 -0.04919361170721004 WHLGYSPE 8 Unmodified _WHLGYSPE_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2;ENST00000485545.5_2_7:73646438-73651717:-|nuORF ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MSMS UPN47_class_I_Rep_2 3 494.71875 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 114.75 1 118.26 117.76 118.76 3.5039 0 0 0 0.40738 1 27952 27952 0.79363 0 1 53843 903 33563 33581 62110 62110 -0.04919361170721004 WHLVKNKK 8 Unmodified _WHLVKNKK_ 0 0 0 L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|72|3|sense L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|72|3|sense L1MEc_dup16142|chr16:29205881-29208480:+|3.4492433364329957|0.1478885221792882|4.54|151.0|72|3|sense MSMS UPN47_class_I_Rep_2 3 526.8217163085938 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 117.45 1 120.94 120.44 121.44 3.4891 0 0 0 0.40738 1 28707 28707 0.79363 0 1 53844 13042 33564 33582 62111 62111 0.10533452050640335 WHLVLVQV 8 Unmodified _WHLVLVQV_ 0 0 0 REV__L1M1_dup1697|chr3:113683767-113686457:-|4.016915444395624|0.07019195904901|5.84|151.0|32|2|sense REV__L1M1_dup1697|chr3:113683767-113686457:-|4.016915444395624|0.07019195904901|5.84|151.0|32|2|sense MSMS UPN48_class_I_Rep_1 5 497.29522705078125 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 41.889 1 45.397 44.897 45.897 3.5079 0 0 0 0.40625 1 7685 7685 2.3027 0 1 + 53845 24016 33565 33583 62112 62112 0.08414958410742202 WHLWRFRY 8 Unmodified _WHLWRFRY_ 0 0 0 REV__L1MD2_dup9047|chr15:100978522-100980709:+|2.3739914690741504|0.0241154460685042|6.62|151.0|32|2|sense REV__L1MD2_dup9047|chr15:100978522-100980709:+|2.3739914690741504|0.0241154460685042|6.62|151.0|32|2|sense MSMS UPN47_class_I_Rep_3 4 632.3314819335938 2 632.330342 1262.64613 NaN NaN NaN NaN NaN NaN NaN 50.941 1 54.157 53.657 54.657 3.2163 0 0 0 0.40738 1 11297 11297 0.79363 0.33529 1 + 53846 27448 33566 33584 62113 62113 0.025313726564490935 WHLYKFFW 8 Unmodified _WHLYKFFW_ 0 0 0 REV__L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|45|2|anti-sense REV__L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_1 5 613.8132934570312 2 613.810919 1225.60729 NaN NaN NaN NaN NaN NaN NaN 38.839 1 42.344 41.844 42.844 3.5048 0 0 0 0.40738 1 6781 6781 0.79363 0.19213 1 + 53847 27160 33567 33585 62114 62114 0.003506473020706835 WHMCFKHK 8 Unmodified _WHMCFKHK_ 0 0 0 REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|23|1|sense REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|23|1|sense MSMS UPN46_class_I_Rep_3 1 558.3845825195312 2 558.765132 1115.51571 NaN NaN NaN NaN NaN NaN NaN 19.106 1 19.106 18.606 19.606 0 0 0 0 0.40738 1 1772 1772 0.79363 0 1 + 53848 32404 33568 33586 62115 62115 -0.0374268265838964 WHMCFKHK 8 Unmodified _WHMCFKHK_ 0 0 0 REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|23|1|sense REV__Tigger1_dup2548|chr3:130869459-130871271:+|7.505389221275997|0.1014083756718856|6.21|151.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 558.7633666992188 2 558.765132 1115.51571 NaN NaN NaN NaN NaN NaN NaN 23.168 1 26.519 26.019 27.019 3.3503 0 0 0 0.40738 1 2898 2898 0.79363 0 1 + 53849 32404 33568 33586 62116 62116 -0.0374268265838964 WHMYYSTFT 9 Unmodified _WHMYYSTFT_ 0 0 0 REV__nc|ENSG00000211962|P01743|IGHV1-46 REV__nc|ENSG00000211962|P01743|IGHV1-46 MSMS UPN48_class_I_Rep_1 5 618.2633666992188 2 618.263142 1234.51173 NaN NaN NaN NaN NaN NaN NaN 51.16 1 54.685 54.185 55.185 3.5246 0 0 0 0.40038 1 10523 10523 0.6015 0 1 + 53850 32105 33569 33587 62117 62117 -0.09614493671142554 WHNEDRLR 8 Unmodified _WHNEDRLR_ 0 0 0 REV__AluSx1_dup64345|chr10:26498227-26498521:+|1.6593893376509374|0.0593770008835461|4.8|151.0|6|2|sense REV__AluSx1_dup64345|chr10:26498227-26498521:+|1.6593893376509374|0.0593770008835461|4.8|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 563.2817993164062 2 563.281046 1124.54754 NaN NaN NaN NaN NaN NaN NaN 86.021 1 89.392 88.892 89.892 3.3716 0 0 0 0.40746 1 21559 21559 0.69038 0 1 + 53851 17183 33570 33588 62118 62118 -0.009752753792554358 WHPLQRFF 8 Unmodified _WHPLQRFF_ 0 0 0 nc|ENSG00000218109|Q8N7Y1|KIRREL3-AS3;ENST00000404882.3_1_11:126873339-126874064:+|nuORF nc|ENSG00000218109|Q8N7Y1|KIRREL3-AS3 nc|ENSG00000218109|Q8N7Y1|KIRREL3-AS3 MSMS UPN47_class_I_Rep_2 3 565.79931640625 2 565.798343 1129.58213 NaN NaN NaN NaN NaN NaN NaN 16.878 1 20.264 19.764 20.764 3.3864 0 0 0 0.40738 1 1157 1157 0.79363 0.10326 1 53852 6608 33571 33589 62119 62119 0.022525924994852176 WHPWPHTDS 9 Unmodified _WHPWPHTDS_ 0 0 0 ENST00000388712.7_2_9:88641285-88641411:-|nuORF ENST00000388712.7_2_9:88641285-88641411:-|nuORF ENST00000388712.7_2_9:88641285-88641411:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 581.7560424804688 2 581.756872 1161.49919 0.35149 0.00020448 -1.4904 -0.00086704 -1.1389 -0.00066256 581.755936760283 65.2 0.41605 68.555 68.376 68.792 3.3557 38 26 2 0 0 0 0.45688 1 15567 15567 4.756 0.42677 1 82100 53853 6506 33572 33590 62120 62120 -0.0750976901915692 WHQELWQV 8 Unmodified _WHQELWQV_ 0 0 0 REV__ENST00000538526.5_3_12:109697932-109704164:+|nuORF REV__ENST00000538526.5_3_12:109697932-109704164:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 563.27734375 2 563.277441 1124.54033 0.39563 0.00022285 -0.6595 -0.00037148 -0.26387 -0.00014863 563.2776080079027 76.211 0.074669 79.614 79.564 79.639 3.4034 6 5 2 0 0 0 0.82752 1 18852 18852 2.0598 0 1 47656 + 53854 17866 33573 33591 62121 62121 -0.016960079796717764 WHRIALVLLY 10 Unmodified _WHRIALVLLY_ 0 0 0 Charlie1_dup27|chr1:27805728-27806660:-|2.1504620103784573|0.4516304419732413|2.25|151.0|14|2|sense Charlie1_dup27|chr1:27805728-27806660:-|2.1504620103784573|0.4516304419732413|2.25|151.0|14|2|sense Charlie1_dup27|chr1:27805728-27806660:-|2.1504620103784573|0.4516304419732413|2.25|151.0|14|2|sense MSMS UPN46_class_I_Rep_3 1 642.3845825195312 2 642.384783 1282.75501 NaN NaN NaN NaN NaN NaN NaN 89.77 1 89.77 89.27 90.27 0 0 0 0 0.53105 1 21613 21613 0.45834 0 1 53855 432 33574 33592 62122 62122 0.12494538836085667 WHRRWWKNIL 10 Unmodified _WHRRWWKNIL_ 0 0 0 REV__L1MC4a_dup921|chr2:68195181-68195947:-|2.1956883326504357|0.056007430399225|5.29|151.0|4|1|sense REV__L1MC4a_dup921|chr2:68195181-68195947:-|2.1956883326504357|0.056007430399225|5.29|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 498.9476318359375 3 498.945828 1493.81566 NaN NaN NaN NaN NaN NaN NaN 35.894 1 39.581 39.081 40.081 3.6877 0 0 0 0.53105 1 5976 5976 0.15932 0 1 + 53856 27035 33575 33593 62123 62123 0.08850068939023004 WHRRWWKNIL 10 Unmodified _WHRRWWKNIL_ 0 0 0 REV__L1MC4a_dup921|chr2:68195181-68195947:-|2.1956883326504357|0.056007430399225|5.29|151.0|4|1|sense REV__L1MC4a_dup921|chr2:68195181-68195947:-|2.1956883326504357|0.056007430399225|5.29|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 498.94805908203125 3 498.945828 1493.81566 NaN NaN NaN NaN NaN NaN NaN 36.037 1 39.724 39.224 40.224 3.6877 0 0 0 0.53105 1 6016 6016 0.77653 0.27058 1 + 53857 27035 33575 33593 62124 62124 0.08850068939023004 WHRWQWRV 8 Unmodified _WHRWQWRV_ 0 0 0 nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;ENSG00000118322|ENST00000327245|ATP10B nc|ENSG00000118322|O94823-2|ATP10B nc|ENSG00000118322|O94823-2|ATP10B MSMS UPN48_class_I_Rep_2 6 627.3256225585938 2 627.325591 1252.63663 NaN NaN NaN NaN NaN NaN NaN 58.333 1 61.831 61.331 62.331 3.4987 0 0 0 0.40746 1 12695 12695 0.69038 0 1 53858 7229 33576 33594 62125 62125 0.020416043709019505 WHSCCLSLK 9 Unmodified _WHSCCLSLK_ 0 0 0 REV__AluSx_dup50441|chr8:66718519-66718827:-|1.0851440250480795|0.0027011194719975|8.65|151.0|15|1|anti-sense REV__AluSx_dup50441|chr8:66718519-66718827:-|1.0851440250480795|0.0027011194719975|8.65|151.0|15|1|anti-sense MSMS UPN46_class_I_Rep_3 1 538.7816772460938 2 538.75443 1075.49431 NaN NaN NaN NaN NaN NaN NaN 92.341 1 92.341 91.841 92.841 0 0 0 0 0.39518 1 22344 22344 1.8442 0 1 + 53859 17143 33577 33595 62126 62126 -0.040421124777822115 WHSHSQVES 9 Unmodified _WHSHSQVES_ 0 0 0 REV__MLT1D_dup11393|chrX:30555325-30555752:+|1.1412791725502218|0.0557480444472288|4.36|151.0|25|3|anti-sense REV__MLT1D_dup11393|chrX:30555325-30555752:+|1.1412791725502218|0.0557480444472288|4.36|151.0|25|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 548.7437133789062 2 548.743962 1095.47337 -0.18512 -0.00010158 -0.73781 -0.00040487 -0.92293 -0.00050645 548.743569498001 30.623 0.5351 33.934 33.706 34.241 3.3116 65 41 2 0 0 0 0.46434 1 5136 5136 4.3292 0 1 85252 + 53860 31664 33578 33596 62127 62127 -0.07054663261442329 WHTETPLIF 9 Unmodified _WHTETPLIF_ 0 0 0 L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|185|3|anti-sense L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|185|3|anti-sense L1MA3_dup1780|chr3:141545754-141548461:-|4.3677762083220175|0.3159489984158979|3.79|151.0|185|3|anti-sense MSMS UPN46_class_I_Rep_3 1 572.294677734375 2 572.295299 1142.57605 NaN NaN NaN NaN NaN NaN NaN 101.5 1 101.5 101 102 0 0 0 0 0.4007 1 24764 24764 0.52476 0 1 53861 9485 33579 33597 62128 62128 0.010460294773110945 WHTVVLLIFI 10 Unmodified _WHTVVLLIFI_ 0 0 0 REV__L1MC4_dup13530|chr9:131663100-131664895:-|1.6413693418389752|0.0346200079768732|5.57|151.0|73|1|anti-sense REV__L1MC4_dup13530|chr9:131663100-131664895:-|1.6413693418389752|0.0346200079768732|5.57|151.0|73|1|anti-sense MSMS UPN46_class_I_Rep_3 1 620.87841796875 2 620.876259 1239.73797 NaN NaN NaN NaN NaN NaN NaN 64.614 1 64.614 64.114 65.114 0 0 0 0 0.53105 1 14554 14554 1.6526 0.17072 1 + 53862 26810 33580 33598 62129 62129 0.12768618230256834 WHVAHPSCS 9 Unmodified _WHVAHPSCS_ 0 0 0 REV__L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|58|3|anti-sense REV__L1MA9_dup10379|chrX:154721644-154722584:+|1.2221356082107346|0.0160270405843322|6.25|151.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 512.7509155273438 2 512.226894 1022.43923 0.21206 0.00010862 3.0729 0.001574 3.285 0.0016826 512.7320127316594 61.283 0.066563 64.448 64.412 64.478 3.1651 9 5 2 0 0 0 0.12444 1 14440 14440 2.0598 0.21551 1 35532 + 53863 25585 33581 33599 62130 62130 -0.07108782954037451 WHVFIRVNK 9 Unmodified _WHVFIRVNK_ 0 0 0 REV__L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|180|1|anti-sense REV__L1PA16_dup8261|chrX:57453360-57458342:+|1.536225402013728|0.3225377545181628|2.25|151.0|180|1|anti-sense MSMS UPN48_class_I_Rep_2 6 599.8465576171875 2 599.845825 1197.6771 NaN NaN NaN NaN NaN NaN NaN 33.767 1 37.428 36.928 37.928 3.6607 0 0 0 0.40038 1 5366 5366 0.6015 0.076735 1 + 53864 29412 33582 33600 62131 62131 0.08616525970683142 WHVGLLGSL 9 Unmodified _WHVGLLGSL_ 0 0 0 MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|86|3|anti-sense;MER61-int_dup1043|chr17:29433845-29435848:-|2.913526147696803|0.0222327334898406|7.03|151.0|100|2|anti-sense MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|86|3|anti-sense MER61-int_dup77|chr1:176100410-176101955:+|1.1305944953027305|0.0281382561535025|5.33|151.0|86|3|anti-sense MSMS UPN47_class_I_Rep_3 4 491.2792053222656 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 68.633 1 71.83 71.33 72.33 3.1977 0 0 0 0.39518 1 16690 16690 1.8442 0 1 53865 16154 33583 33601 62132 62132 0.053300815140460145 WHVHLLDY 8 Unmodified _WHVHLLDY_ 0 0 0 ENST00000417037.6_2_3:38182773-38183136:+|nuORF ENST00000417037.6_2_3:38182773-38183136:+|nuORF ENST00000417037.6_2_3:38182773-38183136:+|nuORF MSMS UPN47_class_I_Rep_3 4 541.7730102539062 2 541.774534 1081.53451 NaN NaN NaN NaN NaN NaN NaN 54.183 1 57.369 56.869 57.869 3.1856 0 0 0 0.40604 1 12282 12282 2.5775 0 1 53866 6657 33584 33602 62133 62133 -0.002991064913203445 WHVKKVKK 8 Unmodified _WHVKKVKK_ 0 0 0 REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF MSMS UPN47_class_I_Rep_3 4 526.8387451171875 2 526.840011 1051.66547 NaN NaN NaN NaN NaN NaN NaN 60.486 1 63.651 63.151 64.151 3.1651 0 0 0 0.40738 1 14207 14207 0.79363 0.10326 1 + 53867 22361 33585 33603 62134 62134 0.14170328947352573 WHWEHLET 8 Unmodified _WHWEHLET_ 0 0 0 ENST00000274542.6_1_5:158590058-158595923:-|nuORF ENST00000274542.6_1_5:158590058-158595923:-|nuORF ENST00000274542.6_1_5:158590058-158595923:-|nuORF MSMS UPN47_class_I_Rep_1 2 569.2571411132812 2 569.259248 1136.50394 NaN NaN NaN NaN NaN NaN NaN 71.413 1 74.788 74.288 75.288 3.3751 0 0 0 0.40738 1 17410 17410 0.79363 0.10326 1 53868 6018 33586 33604 62135 62135 -0.058848848763773276 WHWGWPNR 8 Unmodified _WHWGWPNR_ 0 0 0 REV__ENST00000435683.6_1_19:1042703-1043196:+|nuORF REV__ENST00000435683.6_1_19:1042703-1043196:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 570.2736206054688 2 569.770117 1137.52568 -0.053689 -3.059E-05 1.806 0.001029 1.7523 0.00099839 569.7712364428137 36.546 0.10102 40.216 40.154 40.255 3.6692 10 8 2 0 0 0 0.82752 1 6843 6843 0.79363 0.10326 1 33953 + 53869 22310 33587 33605 62136 62136 -0.037580353371595265 WHYTVEFR 8 Unmodified _WHYTVEFR_ 0 0 0 ENST00000474430.5_1_1:155151285-155154671:+|nuORF;ENST00000468878.1_1_1:155151285-155156663:+|nuORF;nc|ENSG00000163462|Q7Z4K8-2|TRIM46;nc|ENSG00000163462|Q7Z4K8-5|TRIM46;ENSG00000163462|ENST00000334634|TRIM46 ENST00000474430.5_1_1:155151285-155154671:+|nuORF ENST00000474430.5_1_1:155151285-155154671:+|nuORF MSMS UPN48_class_I_Rep_3 7 569.27734375 2 569.277441 1136.54033 NaN NaN NaN NaN NaN NaN NaN 24.262 1 28.031 27.531 28.531 3.769 0 0 0 0.40738 1 2782 2782 0.79363 0 1 53870 4003 33588 33606 62137 62137 -0.022480079796878272 WHYWWLRRPSY 11 Unmodified _WHYWWLRRPSY_ 0 0 0 REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1 REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1 MSMS UPN46_class_I_Rep_3 1 550.8795776367188 3 550.608993 1648.80515 NaN NaN NaN NaN NaN NaN NaN 39.455 1 39.455 38.955 39.955 0 0 0 0 0.38417 1 7584 7584 0.094841 0 1 + 53871 21170 33589 33607 62138 62138 0.006700414939132315 WIATKVLL 8 Unmodified _WIATKVLL_ 0 0 0 REV__ERVL-E-int_dup899|chr2:26222663-26223513:+|1.7776333655950487|0.0631220228003368|4.82|151.0|22|3|sense REV__ERVL-E-int_dup899|chr2:26222663-26223513:+|1.7776333655950487|0.0631220228003368|4.82|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 472.3020324707031 2 472.302396 942.590239 NaN NaN NaN NaN NaN NaN NaN 61.111 1 64.377 63.877 64.877 3.2654 0 0 0 0.40604 1 14341 14341 2.5775 0 1 + 53872 23299 33590 33608 62139 62139 0.11664726696278649 WIATQNRQKV 10 Unmodified _WIATQNRQKV_ 0 0 0 L1MEf_dup4906|chr7:37242042-37243101:-|2.26280372129386|0.0149580725465205|7.24|151.0|30|3|sense L1MEf_dup4906|chr7:37242042-37243101:-|2.26280372129386|0.0149580725465205|7.24|151.0|30|3|sense L1MEf_dup4906|chr7:37242042-37243101:-|2.26280372129386|0.0149580725465205|7.24|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 622.3490600585938 2 622.348929 1242.6833 0.3847 0.00023942 -1.118 -0.0006958 -0.73332 -0.00045638 622.3482022811801 67.612 0.39 70.876 70.672 71.062 3.2636 54 33 2 0 0 0 0.55724 1 16283 16283 4.5289 0.58447 1 140590 53873 13284 33591 33609 62140 62140 0.071669994115382 WICLFWIY 8 Unmodified _WICLFWIY_ 0 0 0 L1MB5_dup7977|chr17:4311272-4311795:+|1.166756520102404|0.0122155513765627|6.58|151.0|34|2|anti-sense;L1MB5_dup3116|chr7:92574066-92574538:+|1.597041975663644|0.1211556813567593|3.72|151.0|25|2|anti-sense;L1MB5_dup7216|chr15:42956879-42957531:+|1.6490962508557858|0.2453940608117124|2.75|151.0|28|1|anti-sense L1MB5_dup7977|chr17:4311272-4311795:+|1.166756520102404|0.0122155513765627|6.58|151.0|34|2|anti-sense L1MB5_dup7977|chr17:4311272-4311795:+|1.166756520102404|0.0122155513765627|6.58|151.0|34|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 572.2874145507812 2 572.288431 1142.56231 0.10258 5.8705E-05 -1.2759 -0.00073017 -1.1733 -0.00067147 572.2874840448077 45.964 0.49998 49.664 49.386 49.886 3.6999 49 30 2 0 0 0 0.82752 2 9686 9686;9707 11.114 0 1 78895 53874 10607 33592 33610 62141;62142 62141 -0.003269195554594262 WICLVLVPG 9 Unmodified _WICLVLVPG_ 0 0 0 REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|266|2|anti-sense REV__L1PA7_dup5312|chr6:83942180-83948514:+|4.3835730858894|0.1874427742486132|4.55|151.0|266|2|anti-sense MSMS UPN46_class_I_Rep_3 1 500.2884521484375 2 500.288431 998.562309 NaN NaN NaN NaN NaN NaN NaN 12.342 1 12.342 11.842 12.842 0 0 0 0 0.39326 1 88 88 2.3027 0 1 + 53875 30120 33593 33611 62143 62143 0.06297080444539915 WIDLDSYSY 9 Unmodified _WIDLDSYSY_ 0 0 0 REV__Charlie1a_dup2777|chr8:26301714-26302906:+|1.9462219132744465|0.070994524517357|4.78|151.0|39|3|sense REV__Charlie1a_dup2777|chr8:26301714-26302906:+|1.9462219132744465|0.070994524517357|4.78|151.0|39|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.2579345703125 2 581.258579 1160.50261 0.43809 0.00025465 0.26061 0.00015148 0.69871 0.00040613 581.2586320652532 66.148 1.0177 69.334 68.956 69.974 3.1853 193 70 4 0 0 0 0.41259 1 16077 16077 7.2892 0 1 560030 + 53876 17313 33594 33612 62144 62144 -0.0712256375582001 WIDSKSSFK 9 Unmodified _WIDSKSSFK_ 0 0 0 REV__ENSG00000010671|ENST00000308731|BTK REV__ENSG00000010671|ENST00000308731|BTK MSMS UPN48_class_I_Rep_1 5 549.2841186523438 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 39.692 1 43.197 42.697 43.697 3.5048 0 0 0 0.37692 1 7039 7039 6.2058 0 1 + 53877 17573 33595 33613 62145 62145 0.010894390976773138 WIFGGFFV 8 Unmodified _WIFGGFFV_ 0 0 0 L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|236|3|anti-sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|236|3|anti-sense L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|236|3|anti-sense MSMS UPN48_class_I_Rep_1 5 486.753173828125 2 486.752539 971.490525 NaN NaN NaN NaN NaN NaN NaN 65.618 1 69.07 68.57 69.57 3.4516 0 0 0 0.40738 1 14942 14942 0.79363 0 1 53878 15392 33596 33614 62146 62146 0.0036390908234125163 WIFHPYLY 8 Unmodified _WIFHPYLY_ 0 0 0 REV__MSTA-int_dup518|chr3:121926437-121927252:+|2.2091299961419124|0.1163145921227635|4.25|151.0|22|3|sense REV__MSTA-int_dup518|chr3:121926437-121927252:+|2.2091299961419124|0.1163145921227635|4.25|151.0|22|3|sense MSMS UPN48_class_I_Rep_1 5 569.7900390625 2 569.789653 1137.56475 NaN NaN NaN NaN NaN NaN NaN 37.469 1 40.974 40.474 41.474 3.5052 0 0 0 0.40738 1 6375 6375 0.79363 0 1 + 53879 31879 33597 33615 62147 62147 0.001472521738605792 WIFKYWLG 8 Unmodified _WIFKYWLG_ 0 0 0 ENST00000367142.4_1_1:205684096-205684237:-|nuORF ENST00000367142.4_1_1:205684096-205684237:-|nuORF ENST00000367142.4_1_1:205684096-205684237:-|nuORF MSMS UPN47_class_I_Rep_1 2 556.7999267578125 2 556.80002 1111.58549 NaN NaN NaN NaN NaN NaN NaN 103.27 1 107.05 106.55 107.55 3.7788 0 0 0 0.40738 1 25394 25394 0.79363 0.10326 1 53880 6345 33598 33616 62148 62148 0.03415842553499715 WIFLRIINR 9 Unmodified _WIFLRIINR_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|156|1|anti-sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|156|1|anti-sense MSMS UPN48_class_I_Rep_2 6 615.8770141601562 2 615.877125 1229.7397 NaN NaN NaN NaN NaN NaN NaN 37.588 1 41.305 40.805 41.805 3.7164 0 0 0 0.4007 1 6448 6448 0.52476 0 1 + 53881 24093 33599 33617 62149 62149 0.13401672038889956 WIFTFFFS 8 Unmodified _WIFTFFFS_ 0 0 0 L1M4_dup12716|chr10:27519081-27519882:+|1.3201555126159596|0.078535178739387|4.07|151.0|57|3|anti-sense L1M4_dup12716|chr10:27519081-27519882:+|1.3201555126159596|0.078535178739387|4.07|151.0|57|3|anti-sense L1M4_dup12716|chr10:27519081-27519882:+|1.3201555126159596|0.078535178739387|4.07|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.7708129882812 2 547.770929 1093.5273 NaN NaN NaN NaN NaN NaN NaN 115.9 1 119.55 119.05 120.05 3.6433 0 0 0 0.40604 1 27588 27588 2.5775 0 1 53882 8828 33600 33618 62150 62150 -0.015718390917754732 WIFTLIHK 8 Unmodified _WIFTLIHK_ 0 0 0 REV__L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|94|2|sense REV__L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|94|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 528.8126831054688 2 529.313295 1056.61204 0.40877 0.00021637 2.2541 0.0011931 2.6629 0.0014095 529.3145373962548 73.727 0.10761 77.305 77.25 77.357 3.5779 14 11 2 0 0 0 0.72333 1 17308 17308 0.69038 0 1 60279 + 53883 29395 33601 33619 62151 62151 0.08599531444838249 WIGFAIAVFAL 11 Unmodified _WIGFAIAVFAL_ 0 0 0 REV__L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|322|3|anti-sense REV__L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|322|3|anti-sense MSMS UPN47_class_I_Rep_3 4 604.3466796875 2 604.347335 1206.68012 NaN NaN NaN NaN NaN NaN NaN 71.651 1 74.87 74.37 75.37 3.2188 0 0 0 0.38417 1 17593 17593 1.4819 0 1 + 53884 29592 33602 33620 62152 62152 0.08504356304842986 WIGIRLHKLH 10 Unmodified _WIGIRLHKLH_ 0 0 0 REV__L1MEf_dup9722|chr15:42992052-42993305:-|1.3278293985117244|0.0411911048363606|5.01|151.0|59|2|anti-sense REV__L1MEf_dup9722|chr15:42992052-42993305:-|1.3278293985117244|0.0411911048363606|5.01|151.0|59|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 636.8882446289062 2 636.888024 1271.7615 0.63456 0.00040414 -0.4906 -0.00031245 0.14396 9.1689E-05 636.8876108253568 108.67 0.59799 112.2 112.07 112.67 3.5333 180 69 3 0 0 0 0.51565 1 26458 26458 10.074 10.074 1 35993000 + 53885 28703 33603 33621 62153 62153 0.13648476787443542 WIGIRLHKLH 10 Unmodified _WIGIRLHKLH_ 0 0 0 REV__L1MEf_dup9722|chr15:42992052-42993305:-|1.3278293985117244|0.0411911048363606|5.01|151.0|59|2|anti-sense REV__L1MEf_dup9722|chr15:42992052-42993305:-|1.3278293985117244|0.0411911048363606|5.01|151.0|59|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 636.8880004882812 2 636.888024 1271.7615 0.51406 0.0003274 -0.2592 -0.00016508 0.25486 0.00016232 636.8877340300716 108.68 0.58967 112.22 112.08 112.67 3.5382 159 66 3 0 0 0 0.51565 2 26636 26586;26636 10.074 3.8681 1 31090000 + 53886 28703 33603 33621 62154;62155 62155 0.13648476787443542 WIGLKNINIP 10 Unmodified _WIGLKNINIP_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS UPN46_class_I_Rep_3 1 584.3478393554688 2 584.347866 1166.68118 0.3358 0.00019622 0.1917 0.00011202 0.5275 0.00030825 584.347734950308 33.192 0.050011 33.192 33.15 33.2 0 7 4 3 0 0 0 0.56333 1 5776 5776 1.4819 0.15237 1 332050 53887 932 33604 33622 62156 62156 0.10450570673742732 WIHFFRLI 8 Unmodified _WIHFFRLI_ 0 0 0 REV__Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|145|2|anti-sense REV__Charlie7_dup763|chr3:115113977-115116414:-|1.4743736492144723|0.1763338879713988|3.06|151.0|145|2|anti-sense MSMS UPN48_class_I_Rep_2 6 566.64013671875 2 566.326737 1130.63892 NaN NaN NaN NaN NaN NaN NaN 99.642 1 103.4 102.9 103.9 3.7575 0 0 0 0.40746 1 23664 23664 0.69038 0 1 + 53888 17400 33605 33623 62157 62157 0.0788264005605015 WIHFYIIL 8 Unmodified _WIHFYIIL_ 0 0 0 REV__L1ME1_dup30146|chr21:15019941-15021580:+|2.989072819725114|0.0529981962931253|5.82|149.0|97|1|anti-sense REV__L1ME1_dup30146|chr21:15019941-15021580:+|2.989072819725114|0.0529981962931253|5.82|149.0|97|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.8192138671875 2 552.81567 1103.61679 NaN NaN NaN NaN NaN NaN NaN 14.97 1 18.357 17.857 18.857 3.3864 0 0 0 0.40738 1 696 696 0.79363 0 1 + 53889 27756 33606 33624 62158 62158 0.06912415587612486 WIHIEKYF 8 Unmodified _WIHIEKYF_ 0 0 0 REV__MER31A_dup312|chr3:172176745-172177236:-|2.1701194170808846|0.0226996569719956|6.58|151.0|20|1|anti-sense REV__MER31A_dup312|chr3:172176745-172177236:-|2.1701194170808846|0.0226996569719956|6.58|151.0|20|1|anti-sense MSMS UPN48_class_I_Rep_2 6 568.760009765625 2 568.300384 1134.58622 NaN NaN NaN NaN NaN NaN NaN 111.91 1 115.58 115.08 116.08 3.6666 0 0 0 0.40738 1 26635 26635 0.79363 0 1 + 53890 31255 33607 33625 62159 62159 0.02430637202564867 WIHKLIWK 8 Unmodified _WIHKLIWK_ 0 0 0 REV__L1MD2_dup9047|chr15:100978522-100980709:+|2.3739914690741504|0.0241154460685042|6.62|151.0|22|1|sense REV__L1MD2_dup9047|chr15:100978522-100980709:+|2.3739914690741504|0.0241154460685042|6.62|151.0|22|1|sense MSMS UPN48_class_I_Rep_1 5 562.3438110351562 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 57.168 1 60.662 60.162 61.162 3.4942 0 0 0 0.40746 1 12364 12364 0.69038 0 1 + 53891 27447 33608 33626 62160 62160 0.11379213090117446 WIHLRRKKRER 11 Unmodified _WIHLRRKKRER_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MSMS UPN46_class_I_Rep_3 1 526.660888671875 3 526.65857 1576.95388 NaN NaN NaN NaN NaN NaN NaN 107.49 1 107.49 106.99 107.99 0 0 0 0 0.38417 1 26217 26217 1.2148 0.76031 1 53892 2573 33609 33627 62161 62161 0.18848192187488166 WIHQKVRQ 8 Unmodified _WIHQKVRQ_ 0 0 0 REV__L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|5|1|sense REV__L1ME4b_dup7103|chr5:142779936-142780437:-|1.227062158003157|0.0237570730410459|5.69|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 547.8150024414062 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 116.81 1 120.41 119.91 120.91 3.6036 0 0 0 0.40746 1 28939 28939 0.69038 0 1 + 53893 28306 33610 33628 62162 62162 0.07143379902527158 WIIDWYISL 9 Unmodified _WIIDWYISL_ 0 0 0 REV__L1MB7_dup15858|chr12:66339775-66340482:-|3.6662611263802254|0.2481019658562182|3.89|151.0|26|3|sense REV__L1MB7_dup15858|chr12:66339775-66340482:-|3.6662611263802254|0.2481019658562182|3.89|151.0|26|3|sense MSMS UPN48_class_I_Rep_1 5 604.819580078125 2 604.82115 1207.62775 NaN NaN NaN NaN NaN NaN NaN 35.413 1 38.923 38.423 39.423 3.5101 0 0 0 0.39428 1 5789 5789 2.0598 0.21551 1 + 53894 26155 33611 33629 62163 62163 0.032237731712484674 WIIIQYYH 8 Unmodified _WIIIQYYH_ 0 0 0 L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|61|1|anti-sense L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|61|1|anti-sense L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_3 4 568.2905883789062 2 568.300384 1134.58622 NaN NaN NaN NaN NaN NaN NaN 43.503 1 46.744 46.244 47.244 3.2419 0 0 0 0.40404 1 9032 9032 5.2307 0.90143 1 53895 11622 33612 33630 62164 62164 0.02430637202564867 WIIWILVKV 9 Unmodified _WIIWILVKV_ 0 0 0 REV__L1MA9_dup1209|chr2:32891567-32892332:+|1.0725113075523796|0.0010820645804186|9.95|101.0|40|1|anti-sense REV__L1MA9_dup1209|chr2:32891567-32892332:+|1.0725113075523796|0.0010820645804186|9.95|101.0|40|1|anti-sense MSMS UPN48_class_I_Rep_3 7 585.375 2 585.375895 1168.73724 NaN NaN NaN NaN NaN NaN NaN 24.931 1 28.7 28.2 29.2 3.769 0 0 0 0.40038 1 2962 2962 0.6015 0.076735 1 + 53896 25598 33613 33631 62165 62165 0.1596182358121041 WIKKIWFI 8 Unmodified _WIKKIWFI_ 0 0 0 L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|186|3|sense;L1MA4A_dup4419|chr11:73040594-73041940:-|3.0282694771574423|0.0311956965947254|6.6|151.0|7|1|sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|186|3|sense L1PA10_dup4908|chr11:11885233-11891149:+|3.817023739085799|0.1390663616916077|4.78|151.0|186|3|sense MSMS UPN46_class_I_Rep_3 1 567.3486328125 2 567.347138 1132.67972 NaN NaN NaN NaN NaN NaN NaN 105.19 1 105.19 104.69 105.69 0 0 0 0 0.40746 1 25661 25661 0.69038 0 1 53897 9814 33614 33632 62166 62166 0.11868981375641852 WIKLKYLTF 9 Unmodified _WIKLKYLTF_ 0 0 0 ENST00000578833.2_1_18:75701849-75702093:-|nuORF ENST00000578833.2_1_18:75701849-75702093:-|nuORF ENST00000578833.2_1_18:75701849-75702093:-|nuORF MSMS UPN48_class_I_Rep_3 7 404.588623046875 3 404.577749 1210.71142 NaN NaN NaN NaN NaN NaN NaN 39.978 1 43.629 43.129 44.129 3.6509 0 0 0 0.39428 1 7053 7053 1.0715 0 1 53898 7548 33615 33633 62167 62167 0.11448929338939706 WIKNKLYR 8 Unmodified _WIKNKLYR_ 0 0 0 REV__L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|84|1|anti-sense REV__L1MC4_dup21218|chr16:80988447-80990169:-|2.318863679186251|0.1367224788211722|4.08|151.0|84|1|anti-sense MSMS UPN48_class_I_Rep_1 5 560.8373413085938 2 560.834926 1119.6553 NaN NaN NaN NaN NaN NaN NaN 111.27 1 114.91 114.41 115.41 3.6326 0 0 0 0.40746 1 26994 26994 0.69038 0 1 + 53899 26871 33616 33634 62168 62168 0.10025721222132233 WIKNVPIY 8 Unmodified _WIKNVPIY_ 0 0 0 REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|22|1|sense REV__MER61-int_dup1028|chr16:47489299-47492019:-|1.0628442432609906|0.0424328364954512|4.65|151.0|22|1|sense MSMS UPN47_class_I_Rep_3 4 516.79833984375 2 516.797478 1031.5804 NaN NaN NaN NaN NaN NaN NaN 68.144 1 71.342 70.842 71.842 3.1977 0 0 0 0.40581 1 16539 16539 2.8892 0 1 + 53900 31487 33617 33635 62169 62169 0.06587538690905603 WIKRHCCW 8 Unmodified _WIKRHCCW_ 0 0 0 REV__ENST00000350082.9_1_6:52906066-52926439:-|nuORF REV__ENST00000350082.9_1_6:52906066-52926439:-|nuORF MSMS UPN48_class_I_Rep_1 5 566.2724609375 2 566.270581 1130.52661 NaN NaN NaN NaN NaN NaN NaN 86.557 1 90.17 89.67 90.67 3.613 0 0 0 0.40738 1 20739 20739 0.79363 0.10326 1 + 53901 21851 33618 33636 62170 62170 -0.0334328028411619 WIKTLWEK 8 Unmodified _WIKTLWEK_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1;ENST00000511439.5_1_3:133368770-133375581:-|nuORF ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 552.3197631835938 2 552.316035 1102.61752 0.040216 2.2212E-05 3.9789 0.0021976 4.0191 0.0022198 552.3202704007392 13.666 0.084723 17.054 17 17.084 3.388 11 9 2 0 0 0 0.72333 1 374 374 0 0 1 15033 53902 4038 33619 33637 62171 62171 0.07031210236664265 WIKVVISV 8 Unmodified _WIKVVISV_ 0 0 0 REV__L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|126|2|anti-sense REV__L1MA2_dup3235|chr8:73694528-73697044:+|1.690945904817797|0.0612420391190392|4.79|151.0|126|2|anti-sense MSMS UPN47_class_I_Rep_2 3 472.2876892089844 2 472.302396 942.590239 NaN NaN NaN NaN NaN NaN NaN 87.304 1 90.745 90.245 91.245 3.4407 0 0 0 0.40625 1 21702 21702 2.3027 0 1 + 53903 24852 33620 33638 62172 62172 0.11664726696290018 WILALFTS 8 Unmodified _WILALFTS_ 0 0 0 REV__HAL1_dup1625|chr1:224262196-224263186:+|2.718537618081112|0.0703251539750857|5.27|151.0|65|3|anti-sense REV__HAL1_dup1625|chr1:224262196-224263186:+|2.718537618081112|0.0703251539750857|5.27|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_3 4 475.7724609375 2 475.770929 949.527304 NaN NaN NaN NaN NaN NaN NaN 111.36 1 114.88 114.38 115.38 3.5207 0 0 0 0.40738 1 27334 27334 0.79363 0 1 + 53904 23365 33621 33639 62173 62173 0.05052160908246606 WILFILQN 8 Unmodified _WILFILQN_ 0 0 0 L1MC5a_dup11710|chr11:130311509-130312977:+|2.121408796576601|0.0176226304409496|6.91|151.0|26|2|sense L1MC5a_dup11710|chr11:130311509-130312977:+|2.121408796576601|0.0176226304409496|6.91|151.0|26|2|sense L1MC5a_dup11710|chr11:130311509-130312977:+|2.121408796576601|0.0176226304409496|6.91|151.0|26|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 524.2771606445312 2 523.805303 1045.59605 0.36219 0.00018972 -0.22851 -0.00011969 0.13368 7.0023E-05 523.8051820457115 79.488 0.6657 82.783 82.176 82.842 3.295 83 59 2 0 0 0 0.72333 1 19714 19714 8.5933 1.304 1 232620 53905 11711 33622 33640 62174 62174 0.07507825207949281 WILKLKKKKKK 11 Unmodified _WILKLKKKKKK_ 0 0 0 L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 480.8009033203125 3 481.009547 1440.00681 NaN NaN NaN NaN NaN NaN NaN 116.74 1 120.34 119.84 120.84 3.6036 0 0 0 0.38417 1 28921 28921 0 0 1 53906 11534 33623 33641 62175 62175 0.30440757197538915 WILKLKKKKKK 11 Unmodified _WILKLKKKKKK_ 0 0 0 L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 481.2037658691406 3 481.009547 1440.00681 NaN NaN NaN NaN NaN NaN NaN 118.63 1 122.05 121.55 122.55 3.4238 0 0 0 0.38417 1 29263 29263 0 0 1 53907 11534 33623 33641 62176 62176 0.30440757197538915 WILKLKKKKKK 11 Unmodified _WILKLKKKKKK_ 0 0 0 L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 481.3370056152344 3 481.009547 1440.00681 NaN NaN NaN NaN NaN NaN NaN 118.98 1 122.39 121.89 122.89 3.4157 0 0 0 0.38417 1 29367 29367 0 0 1 53908 11534 33623 33641 62177 62177 0.30440757197538915 WILKLKKKKKK 11 Unmodified _WILKLKKKKKK_ 0 0 0 L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense L1MC4_dup8971|chr6:35875514-35876158:+|1.0662020264099603|0.0247298356995704|5.43|151.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 480.79150390625 3 481.009547 1440.00681 NaN NaN NaN NaN NaN NaN NaN 115.08 1 118.74 118.24 119.24 3.6616 0 0 0 0.38417 1 27531 27531 0 0 1 53909 11534 33623 33641 62178 62178 0.30440757197538915 WILLSAPHN 9 Unmodified _WILLSAPHN_ 0 0 0 L1MC5a_dup5634|chr5:151727862-151728483:+|1.5801175563569774|0.2310620278651163|2.77|151.0|39|2|anti-sense L1MC5a_dup5634|chr5:151727862-151728483:+|1.5801175563569774|0.2310620278651163|2.77|151.0|39|2|anti-sense L1MC5a_dup5634|chr5:151727862-151728483:+|1.5801175563569774|0.2310620278651163|2.77|151.0|39|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 525.7898559570312 2 525.790184 1049.56581 0.39912 0.00020985 0.19237 0.00010114 0.59149 0.000311 525.7903048593649 31.635 0.17217 35.276 35.152 35.325 3.641 20 17 2 0 0 0 0.46869 1 4787 4787 3.9444 1.3669 1 67987 53910 11756 33624 33642 62179 62179 0.04301466542756316 WILLSAPHN 9 Unmodified _WILLSAPHN_ 0 0 0 L1MC5a_dup5634|chr5:151727862-151728483:+|1.5801175563569774|0.2310620278651163|2.77|151.0|39|2|anti-sense L1MC5a_dup5634|chr5:151727862-151728483:+|1.5801175563569774|0.2310620278651163|2.77|151.0|39|2|anti-sense L1MC5a_dup5634|chr5:151727862-151728483:+|1.5801175563569774|0.2310620278651163|2.77|151.0|39|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 525.790184 1049.56581 0.34538 0.0001816 4.5562 0.0023956 4.9016 0.0025772 525.7920922227538 31.271 0.053474 34.972 34.935 34.989 3.7015 -0.15184 0.0041971 NaN 3.9444 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 16883 53911 11756 33624 33642 0.04301466542756316 WILLSLLM 8 Unmodified _WILLSLLM_ 0 0 0 L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|116|3|anti-sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|116|3|anti-sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|116|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 494.2974548339844 2 494.798632 987.582711 0.2699 0.00013355 1.0974 0.00054301 1.3673 0.00067656 494.79897423415173 77.608 0.12532 81.23 81.148 81.273 3.6222 14 12 2 0 0 0 0.72333 1 18359 18359 2.5775 0 1 74423 53912 12095 33625 33643 62180 62180 0.08842251104363186 WILMIYTI 8 Unmodified _WILMIYTI_ 0 0 0 REV__L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|150|3|anti-sense REV__L1PA8_dup1083|chr2:190239951-190242627:-|2.7947970139971567|0.400960301032836|2.8|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_3 7 526.7973022460938 2 526.796089 1051.57763 NaN NaN NaN NaN NaN NaN NaN 23.963 1 27.732 27.232 28.232 3.769 0 0 0 0.40746 1 2707 2707 0.69038 0 1 + 53913 30195 33626 33644 62181 62181 0.05389947241724258 WILPAHKWK 9 Unmodified _WILPAHKWK_ 0 0 0 nc|ENSG00000151360|Q8N6M5-2|ALLC;ENSG00000151360|ENST00000252505|ALLC nc|ENSG00000151360|Q8N6M5-2|ALLC nc|ENSG00000151360|Q8N6M5-2|ALLC MSMS UPN47_class_I_Rep_2 3 589.845458984375 2 589.845294 1177.67603 NaN NaN NaN NaN NaN NaN NaN 87.948 1 91.395 90.895 91.895 3.4471 0 0 0 0.40038 1 21866 21866 0.6015 0 1 53914 3586 33627 33645 62182 62182 0.094303116017727 WILPNVKPF 9 Unmodified _WILPNVKPF_ 0 0 0 nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 MULTI-MSMS UPN48_class_I_Rep_1 5 557.3270874023438 2 557.326402 1112.63825 0.51071 0.00028463 0.0058068 3.2363E-06 0.51651 0.00028787 557.3263086617267 73.695 0.13701 77.177 77.072 77.209 3.4812 20 15 2 0 0 0 0.40174 1 17380 17380 7.9102 0.62092 1 109490 53915 1820 33628 33646 62183 62183 0.0864380061632346 WILPNVKPF 9 Unmodified _WILPNVKPF_ 0 0 0 nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 MSMS UPN48_class_I_Rep_1 5 557.3268432617188 2 557.326402 1112.63825 NaN NaN NaN NaN NaN NaN NaN 73.812 1 77.293 76.793 77.793 3.4812 0 0 0 0.28335 1 17415 17415 11.64 0.81637 1 53916 1820 33628 33646 62184 62184 0.0864380061632346 WILPNVKPF 9 Unmodified _WILPNVKPF_ 0 0 0 nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 MULTI-MSMS UPN48_class_I_Rep_2 6 557.3252563476562 2 557.326402 1112.63825 0.49013 0.00027316 -0.71072 -0.0003961 -0.22059 -0.00012294 557.3260200955305 73.382 0.24413 76.96 76.812 77.056 3.5779 36 27 2 0 0 0 0.33654 1 17218 17218 11.64 0.81637 1 71909 53917 1820 33628 33646 62185 62185 0.0864380061632346 WILPNVKPF 9 Unmodified _WILPNVKPF_ 0 0 0 nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 nc|ENSG00000107518|Q5VV63-2|ATRNL1 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 557.326402 1112.63825 0.51071 0.00028463 0.0058068 3.2363E-06 0.51651 0.00028787 557.3263086617267 73.695 0.13701 77.177 77.072 77.209 3.4812 0.10819 0.00045152 NaN 11.64 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 109490 53918 1820 33628 33646 0.0864380061632346 WILPQLWIGI 10 Unmodified _WILPQLWIGI_ 0 0 0 ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|2|intron;ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|3|intron;ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|7|intron;ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|4|intron;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1 ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|2|intron ENSG00000100731.16,PCNX1,chr14,+,I33.1,71076420,71078650|30|7.52|2|intron MSMS UPN48_class_I_Rep_3 7 619.8694458007812 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 87.652 1 91.443 90.943 91.943 3.7905 0 0 0 0.53105 1 20796 20796 0.45834 0 1 53919 1530 33629 33647 62186 62186 0.11296331713219843 WILSGPRVVS 10 Unmodified _WILSGPRVVS_ 0 0 0 L1M3a_dup400|chr16:20706968-20707998:+|1.911578190150468|0.1158343311987495|4.04|148.0|34|1|anti-sense L1M3a_dup400|chr16:20706968-20707998:+|1.911578190150468|0.1158343311987495|4.04|148.0|34|1|anti-sense L1M3a_dup400|chr16:20706968-20707998:+|1.911578190150468|0.1158343311987495|4.04|148.0|34|1|anti-sense MSMS UPN48_class_I_Rep_2 6 557.326171875 2 557.324391 1112.63423 NaN NaN NaN NaN NaN NaN NaN 73.514 1 77.092 76.592 77.592 3.5779 0 0 0 0.53105 1 17264 17264 5.2969 0.54088 1 53920 8780 33630 33648 62187 62187 0.08241711122627748 WILWQLYFRL 10 Unmodified _WILWQLYFRL_ 0 0 0 L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|217|1|anti-sense L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|217|1|anti-sense L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|217|1|anti-sense MSMS UPN46_class_I_Rep_3 1 479.9387512207031 3 479.939569 1436.79688 NaN NaN NaN NaN NaN NaN NaN 13.698 1 13.698 13.198 14.198 0 0 0 0 0.53105 1 447 447 0.15932 0 1 53921 9575 33631 33649 62188 62188 0.09595094524593151 WIMPWLCA 8 Unmodified _WIMPWLCA_ 0 0 0 REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|215|1|anti-sense REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|215|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.2459716796875 2 510.245709 1018.47687 NaN NaN NaN NaN NaN NaN NaN 93.29 1 96.914 96.414 97.414 3.624 0 0 0 0.40738 1 22418 22418 0.79363 0 1 + 53922 30429 33632 33650 62189 62189 -0.031634080127787456 WIPIIHCSR 9 Unmodified _WIPIIHCSR_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|143|3|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|143|3|sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|143|3|sense MSMS UPN47_class_I_Rep_2 3 562.8071899414062 2 562.805311 1123.59607 NaN NaN NaN NaN NaN NaN NaN 13.685 1 17.073 16.573 17.573 3.388 0 0 0 0.40038 1 387 387 0.6015 0 1 53923 13586 33633 33651 62190 62190 0.039215019362927706 WIPLQHRA 8 Unmodified _WIPLQHRA_ 0 0 0 REV__MER21B_dup2600|chr20:3896407-3897196:+|1.001407595561557|0.0150826962077176|6.05|151.0|42|3|anti-sense REV__MER21B_dup2600|chr20:3896407-3897196:+|1.001407595561557|0.0150826962077176|6.05|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_3 4 510.7287902832031 2 510.790518 1019.56648 NaN NaN NaN NaN NaN NaN NaN 24.836 1 28.186 27.686 28.686 3.3509 0 0 0 0.40604 1 3396 3396 2.5775 0 1 + 53924 31208 33634 33652 62191 62191 0.05748305982456259 WIPLRLWGVR 10 Unmodified _WIPLRLWGVR_ 0 0 0 REV__L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|102|1|anti-sense REV__L1PA16_dup3908|chr4:150874109-150876972:+|1.0202996891094072|0.0317850820600514|5.0|150.0|102|1|anti-sense MSMS UPN48_class_I_Rep_1 5 648.3932495117188 2 648.3904 1294.76625 NaN NaN NaN NaN NaN NaN NaN 105.92 1 109.55 109.05 110.05 3.6277 0 0 0 0.53105 1 25524 25524 1.4819 0.28856 1 + 53925 29371 33635 33653 62192 62192 0.1306536093018167 WIPPDFPV 8 Unmodified _WIPPDFPV_ 0 0 0 REV__ENST00000524517.5_1_10:77098119-77118447:+|nuORF REV__ENST00000524517.5_1_10:77098119-77118447:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.7720031738281 2 485.755278 969.496004 NaN NaN NaN NaN NaN NaN NaN 20.399 1 23.945 23.445 24.445 3.5454 0 0 0 0.40738 1 1712 1712 0.79363 0 1 + 53926 22804 33636 33654 62193 62193 0.010035878741405213 WIRCTFSGRYE 11 Unmodified _WIRCTFSGRYE_ 0 0 0 REV__nc|ENSG00000142330|Q9HC96-6|CAPN10 REV__nc|ENSG00000142330|Q9HC96-6|CAPN10 MULTI-SECPEP UPN46_class_I_Rep_3 1 473.7624206542969 3 473.227561 1416.66085 0.17532 8.2964E-05 0.90685 0.00042915 1.0822 0.00051211 473.5616204130551 53.705 0.039257 53.705 53.669 53.708 0 5 3 2 0 0 0 22.551 1 11572 11572 1.2148 0 1 89158 + 53927 19401 33637 33655 62194 62194 -0.030809680483343982 WISLYWASSF 10 Unmodified _WISLYWASSF_ 0 0 0 L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|72|1|anti-sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|72|1|anti-sense L1PB1_dup5954|chr7:102800030-102801642:+|1.2982715591424512|0.1989502710664465|2.71|151.0|72|1|anti-sense MSMS UPN46_class_I_Rep_3 1 630.3070068359375 2 630.308406 1258.60226 NaN NaN NaN NaN NaN NaN NaN 26.864 1 26.864 26.364 27.364 0 0 0 0 0.53105 1 3907 3907 1.4819 0.51963 1 53928 15161 33638 33656 62195 62195 -0.016697013512157355 WISVLVLYLK 10 Unmodified _WISVLVLYLK_ 0 0 0 L1ME1_dup5425|chr3:15782965-15783756:+|12.95365497179401|0.0474145368655398|8.09|151.0|63|3|anti-sense L1ME1_dup5425|chr3:15782965-15783756:+|12.95365497179401|0.0474145368655398|8.09|151.0|63|3|anti-sense L1ME1_dup5425|chr3:15782965-15783756:+|12.95365497179401|0.0474145368655398|8.09|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_1 2 617.3729248046875 2 617.383917 1232.75328 NaN NaN NaN NaN NaN NaN NaN 77.875 1 81.304 80.804 81.804 3.4289 0 0 0 0.53105 1 19340 19340 1.6526 0 1 53929 12419 33639 33657 62196 62196 0.1462148502744185 WITELKRI 8 Unmodified _WITELKRI_ 0 0 0 ENST00000480488.2_1_20:18393725-18393827:-|nuORF ENST00000480488.2_1_20:18393725-18393827:-|nuORF ENST00000480488.2_1_20:18393725-18393827:-|nuORF MSMS UPN47_class_I_Rep_3 4 529.82373046875 2 529.821484 1057.62842 NaN NaN NaN NaN NaN NaN NaN 35.463 1 38.718 38.218 39.218 3.2547 0 0 0 0.40604 1 6572 6572 2.5775 0 1 53930 6995 33640 33658 62197 62197 0.10190612610949756 WITYLMWRL 9 Unmodified _WITYLMWRL_ 0 0 0 ENST00000503862.5_3_4:108746377-108829880:+|nuORF ENST00000503862.5_3_4:108746377-108829880:+|nuORF ENST00000503862.5_3_4:108746377-108829880:+|nuORF MSMS UPN48_class_I_Rep_3 7 641.3465576171875 2 641.344269 1280.67399 NaN NaN NaN NaN NaN NaN NaN 60.232 1 63.749 63.249 64.249 3.5169 0 0 0 0.39518 1 13215 13215 1.8442 0 1 53931 7143 33641 33659 62198 62198 0.0448751480168994 WIVFVWLQRWV 11 Unmodified _WIVFVWLQRWV_ 0 0 0 REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|370|3|anti-sense REV__HERV30-int_dup19|chr6:118617801-118624278:+|2.056976498387024|0.0755788129176321|4.77|151.0|370|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.29144287109375 3 511.290602 1530.84998 NaN NaN NaN NaN NaN NaN NaN 29.492 1 33.124 32.624 33.624 3.6316 0 0 0 0.38417 1 4198 4198 0.094841 0 1 + 53932 23588 33642 33660 62199 62199 0.10578472307247466 WIVKIFFH 8 Unmodified _WIVKIFFH_ 0 0 0 L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|186|1|anti-sense L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|186|1|anti-sense L1PB1_dup8924|chr10:32548646-32554725:-|1.7273168222509832|0.1697327077588105|3.35|150.0|186|1|anti-sense MSMS UPN48_class_I_Rep_3 7 545.3164672851562 2 545.315838 1088.61712 NaN NaN NaN NaN NaN NaN NaN 84.448 1 88.197 87.697 88.697 3.7494 0 0 0 0.40746 1 20038 20038 0.69038 0 1 53933 15211 33643 33661 62200 62200 0.07635835307473826 WIVLVVFYLK 10 Unmodified _WIVLVVFYLK_ 0 0 0 L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|76|1|anti-sense L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|76|1|anti-sense L1MC2_dup3029|chr8:106730897-106733060:-|2.449818266463896|0.237393379864259|3.37|151.0|76|1|anti-sense MSMS UPN47_class_I_Rep_1 2 640.3932495117188 2 640.394285 1278.77402 NaN NaN NaN NaN NaN NaN NaN 51.109 1 54.702 54.202 55.202 3.5932 0 0 0 0.53105 1 11265 11265 0.45834 0 1 53934 11248 33644 33662 62201 62201 0.14578075407143842 WIVLYVYKK 9 Unmodified _WIVLYVYKK_ 0 0 0 REV__L1MEd_dup15251|chr11:78362630-78363059:+|1.035540960623555|0.0037430666212187|8.11|151.0|4|1|sense REV__L1MEd_dup15251|chr11:78362630-78363059:+|1.035540960623555|0.0037430666212187|8.11|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 606.3616333007812 2 606.362985 1210.71142 NaN NaN NaN NaN NaN NaN NaN 38.946 1 38.946 38.446 39.446 0 0 0 0 0.40038 1 7451 7451 0.6015 0.076735 1 + 53935 28537 33645 33663 62202 62202 0.11448929338939706 WIVRPRLLY 9 Unmodified _WIVRPRLLY_ 0 0 0 L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|54|1|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|54|1|anti-sense L1M1_dup5524|chrX:79238175-79240071:-|1.3096901375726897|0.0100299096019402|7.03|149.0|54|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 608.4060668945312 2 608.371675 1214.7288 0.55698 0.00033885 -2.3095 -0.001405 -1.7525 -0.0010662 609.3728520778219 108.06 0.044289 111.74 111.7 111.75 3.6813 7 3 3 0 0 0 0.11598 1 25531 25531 7.2892 0 1 470290 53936 8598 33646 33664 62203 62203 0.13002269664616506 WIVVPSVRTP 10 Unmodified _WIVVPSVRTP_ 0 0 0 ENST00000373517.3_1_X:72434272-72434665:-|nuORF ENST00000373517.3_1_X:72434272-72434665:-|nuORF ENST00000373517.3_1_X:72434272-72434665:-|nuORF MSMS UPN47_class_I_Rep_1 2 576.8589477539062 2 577.340041 1152.66553 NaN NaN NaN NaN NaN NaN NaN 109.35 1 112.95 112.45 113.45 3.6046 0 0 0 0.53105 1 26967 26967 5.7319 2.7366 1 53937 6416 33647 33665 62204 62204 0.09530284156721791 WIWMKMRK 8 Unmodified _WIWMKMRK_ 0 0 0 REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF REV__ENST00000446197.7_1_14:24584891-24586136:+|nuORF MSMS UPN48_class_I_Rep_3 7 589.8181762695312 2 589.819907 1177.62526 NaN NaN NaN NaN NaN NaN NaN 77.298 1 80.9 80.4 81.4 3.6016 0 0 0 0.40604 1 18251 18251 2.5775 0 1 + 53938 22359 33648 33666 62205 62205 0.04355322960918784 WIYFKQYI 8 Unmodified _WIYFKQYI_ 0 0 0 REV__L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|47|2|sense REV__L1MB2_dup5274|chr10:42543899-42546114:+|2.408994169466643|0.0706568091779381|5.09|151.0|47|2|sense MSMS UPN48_class_I_Rep_2 6 580.81005859375 2 580.810585 1159.60662 NaN NaN NaN NaN NaN NaN NaN 54.223 1 57.805 57.305 58.305 3.5817 0 0 0 0.40604 1 11440 11440 2.5775 0 1 + 53939 25743 33649 33667 62206 62206 0.0331980786238546 WIYHIYSIYQL 11 Unmodified _WIYHIYSIYQL_ 0 0 0 L1MB8_dup1198|chr2:23834900-23835654:+|1.7248074794365074|0.0114392607815163|7.24|151.0|38|2|anti-sense L1MB8_dup1198|chr2:23834900-23835654:+|1.7248074794365074|0.0114392607815163|7.24|151.0|38|2|anti-sense L1MB8_dup1198|chr2:23834900-23835654:+|1.7248074794365074|0.0114392607815163|7.24|151.0|38|2|anti-sense MSMS UPN48_class_I_Rep_3 7 500.2608947753906 3 500.262489 1497.76564 NaN NaN NaN NaN NaN NaN NaN 71.299 1 74.818 74.318 75.318 3.5185 0 0 0 0.38417 1 16547 16547 1.4551 0.94916 1 53940 10919 33650 33668 62207 62207 0.03666476699868326 WIYHTPAI 8 Unmodified _WIYHTPAI_ 0 0 0 REV__nc|ENSG00000163806|Q5MJ70-1|SPDYA REV__nc|ENSG00000163806|Q5MJ70-1|SPDYA MSMS UPN48_class_I_Rep_1 5 500.7779235839844 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 28.788 1 32.345 31.845 32.845 3.5571 0 0 0 0.40738 1 3906 3906 0.79363 0 1 + 53941 20006 33651 33669 62208 62208 0.01802392622687421 WIYLPIPDV 9 Unmodified _WIYLPIPDV_ 0 0 0 L1MD2_dup9353|chr16:89369498-89369919:+|1.6942358506195476|0.0164582394934615|6.69|151.0|19|2|anti-sense L1MD2_dup9353|chr16:89369498-89369919:+|1.6942358506195476|0.0164582394934615|6.69|151.0|19|2|anti-sense L1MD2_dup9353|chr16:89369498-89369919:+|1.6942358506195476|0.0164582394934615|6.69|151.0|19|2|anti-sense MSMS UPN47_class_I_Rep_2 3 558.337646484375 2 558.310418 1114.60628 NaN NaN NaN NaN NaN NaN NaN 44.485 1 47.841 47.341 48.341 3.3556 0 0 0 0.39518 1 9281 9281 1.8442 0.36234 1 53942 12047 33652 33670 62209 62209 0.05356388142513424 WIYLWKYH 8 Unmodified _WIYLWKYH_ 0 0 0 LTR89_dup287|chr3:185673733-185674194:+|2.263774605429232|0.1788408399507268|3.66|149.0|23|1|anti-sense LTR89_dup287|chr3:185673733-185674194:+|2.263774605429232|0.1788408399507268|3.66|149.0|23|1|anti-sense LTR89_dup287|chr3:185673733-185674194:+|2.263774605429232|0.1788408399507268|3.66|149.0|23|1|anti-sense MSMS UPN47_class_I_Rep_2 3 604.8155517578125 2 604.816202 1207.61785 NaN NaN NaN NaN NaN NaN NaN 37.971 1 41.359 40.859 41.859 3.3879 0 0 0 0.40746 1 7301 7301 0.69038 0 1 53943 15724 33653 33671 62210 62210 0.022346299565015215 WKAARLNY 8 Unmodified _WKAARLNY_ 0 0 0 REV__MER21C_dup2940|chr9:85652526-85653012:+|2.7966833572729426|0.1508225966683657|4.21|151.0|23|1|anti-sense REV__MER21C_dup2940|chr9:85652526-85653012:+|2.7966833572729426|0.1508225966683657|4.21|151.0|23|1|anti-sense MSMS UPN46_class_I_Rep_3 1 511.37664794921875 2 511.282526 1020.5505 NaN NaN NaN NaN NaN NaN NaN 76.127 1 76.127 75.627 76.627 0 0 0 0 0.3903 1 17740 17740 11.64 2.2572 1 + 53944 31228 33654 33672 62211 62211 0.04104599745539872 WKALLGRH 8 Unmodified _WKALLGRH_ 0 0 0 nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5 nc|ENSG00000130305|Q96P11-3|NSUN5 nc|ENSG00000130305|Q96P11-3|NSUN5 MSMS UPN47_class_I_Rep_1 2 490.7937927246094 2 490.793061 979.571569 NaN NaN NaN NaN NaN NaN NaN 110.77 1 114.35 113.85 114.85 3.5835 0 0 0 0.40746 1 27312 27312 0.69038 0 1 53945 2653 33655 33673 62212 62212 0.08096609845074454 WKALLLFFA 9 Unmodified _WKALLLFFA_ 0 0 0 REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|20|3|anti-sense REV__MLT1J_dup10350|chr12:1313055-1313433:-|1.2346834530511617|0.0135569043134118|6.51|151.0|20|3|anti-sense MSMS UPN46_class_I_Rep_3 1 554.8314208984375 2 554.83132 1107.64809 NaN NaN NaN NaN NaN NaN NaN 108.17 1 108.17 107.67 108.67 0 0 0 0 0.26661 1 26433 26433 12.532 2.4576 1 + 53946 31772 33656 33674 62213 62213 0.09856988621709206 WKARAFNK 8 Unmodified _WKARAFNK_ 0 0 0 REV__ENST00000475665.5_1_3:49896753-49898557:-|nuORF REV__ENST00000475665.5_1_3:49896753-49898557:-|nuORF MSMS UPN47_class_I_Rep_1 2 510.80224609375 2 510.790518 1019.56648 NaN NaN NaN NaN NaN NaN NaN 13.369 1 16.826 16.326 17.326 3.457 0 0 0 0.40746 1 315 315 0.69038 0 1 + 53947 20029 33657 33675 62214 62214 0.05748305982456259 WKAVRVDLVV 10 Unmodified _WKAVRVDLVV_ 0 0 0 ENST00000435068.5_1_7:44112663-44113867:-|nuORF;ENST00000458246.5_1_7:44112663-44113867:-|nuORF;nc|ENSG00000122678|Q9NP87-2|POLM;ENSG00000122678|ENST00000242248|POLM;nc|ENSG00000122678|Q9NP87-3|POLM ENST00000435068.5_1_7:44112663-44113867:-|nuORF ENST00000435068.5_1_7:44112663-44113867:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 592.86181640625 2 592.861141 1183.70773 0.55705 0.00033025 0.76845 0.00045558 1.3255 0.00078584 592.8615599613729 108.83 0.73419 108.83 108.68 109.41 0 103 55 2 0 0 0 0.48573 2 26756 26756;26860 13.042 2.9685 1 57579000 53948 2395 33658 33676 62215;62216 62215 0.1232225956507591 WKCCCKLF 8 Unmodified _WKCCCKLF_ 0 0 0 REV__L1ME3E_dup623|chr2:85024585-85025342:-|1.2573883879721328|0.0265137873706573|5.57|151.0|52|3|anti-sense REV__L1ME3E_dup623|chr2:85024585-85025342:-|1.2573883879721328|0.0265137873706573|5.57|151.0|52|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 516.23828125 2 515.737194 1029.45984 -0.1665 -8.5871E-05 -0.0017783 -9.1712E-07 -0.16828 -8.6788E-05 516.2385030479342 33.847 0.12885 37.546 37.46 37.589 3.6983 8 6 2 0 0 0 0.82752 1 6020 6020 0 0 1 54733 + 53949 28164 33659 33677 62217 62217 -0.05371651890254725 WKCLGCIFK 9 Unmodified _WKCLGCIFK_ 0 0 0 REV__L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|138|2|anti-sense REV__L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|138|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 549.283935546875 2 549.285366 1096.55618 0.34028 0.00018691 -0.9328 -0.00051238 -0.59253 -0.00032547 549.284841103378 39.337 0.59811 42.993 42.805 43.403 3.6557 74 53 2 0 0 0 0.42249 1 6830 6830 6.7232 0.51738 1 105550 + 53950 24833 33660 33678 62218 62218 0.011762389413661367 WKCRFKKG 8 Unmodified _WKCRFKKG_ 0 0 0 ENST00000457861.1_1_7:935511-935808:+|nuORF ENST00000457861.1_1_7:935511-935808:+|nuORF ENST00000457861.1_1_7:935511-935808:+|nuORF MSMS UPN48_class_I_Rep_3 7 526.796875 2 526.794746 1051.57494 NaN NaN NaN NaN NaN NaN NaN 15.768 1 19.307 18.807 19.807 3.5392 0 0 0 0.40746 1 666 666 0 0 1 53951 6841 33661 33679 62219 62219 0.05121536627439127 WKDIQRSW 8 Unmodified _WKDIQRSW_ 0 0 0 L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|34|2|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|34|2|sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 559.7890014648438 2 559.790715 1117.56688 NaN NaN NaN NaN NaN NaN NaN 58.945 1 62.432 61.932 62.932 3.487 0 0 0 0.40625 1 12908 12908 2.3027 0 1 53952 9872 33662 33680 62220 62220 0.01279680911648029 WKDLLYVI 8 Unmodified _WKDLLYVI_ 0 0 0 nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79 nc|ENSG00000133958|Q9P2D8-2|UNC79 nc|ENSG00000133958|Q9P2D8-2|UNC79 MSMS UPN46_class_I_Rep_3 1 525.305419921875 2 525.305136 1048.59572 NaN NaN NaN NaN NaN NaN NaN 106.84 1 106.84 106.34 107.34 0 0 0 0 0.40738 1 26058 26058 0.79363 0 1 53953 2824 33663 33681 62221 62221 0.07336405488103992 WKDRKYRR 8 Unmodified _WKDRKYRR_ 0 0 0 REV__L1MEc_dup14071|chr13:20020724-20020980:-|2.398980852959142|0.2716838203460192|3.14|151.0|6|2|sense REV__L1MEc_dup14071|chr13:20020724-20020980:-|2.398980852959142|0.2716838203460192|3.14|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 604.79296875 2 604.343981 1206.67341 NaN NaN NaN NaN NaN NaN NaN 71.642 1 74.861 74.361 75.361 3.2188 0 0 0 0.40753 1 17590 17590 0.6015 0 1 + 53954 28374 33664 33682 62222 62222 0.07833856196816669 WKEFGHYFS 9 Unmodified _WKEFGHYFS_ 0 0 0 L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|139|2|anti-sense L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|139|2|anti-sense L1MB5_dup6876|chr13:108295491-108297649:-|1.3974247339941972|0.0787750073076193|4.15|148.0|139|2|anti-sense MSMS UPN47_class_I_Rep_3 4 600.7771606445312 2 600.777274 1199.53999 NaN NaN NaN NaN NaN NaN NaN 40.507 1 43.744 43.244 44.244 3.2372 0 0 0 0.39428 1 8120 8120 2.0598 0 1 53955 10641 33665 33683 62223 62223 -0.05179427699545158 WKEKEKEASRF 11 Unmodified _WKEKEKEASRF_ 0 0 0 nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A MSMS UPN48_class_I_Rep_1 5 479.9196472167969 3 479.921014 1436.74121 NaN NaN NaN NaN NaN NaN NaN 103.06 1 106.68 106.18 107.18 3.6164 0 0 0 0.38417 1 24844 24844 1.2148 0.4383 1 53956 3803 33666 33684 62224 62224 0.04031216546309224 WKEKWKVYFK 10 Unmodified _WKEKWKVYFK_ 0 0 0 L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|9|1|sense;L1MEc_dup8162|chr7:65901415-65902851:+|2.525300744489672|0.0317200772242029|6.31|151.0|24|2|sense L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|9|1|sense L1MEc_dup8138|chr7:65061986-65062899:+|1.8858226449096536|0.2302181872262995|3.03|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 481.2711486816406 3 481.271207 1440.79179 NaN NaN NaN NaN NaN NaN NaN 28.044 1 31.811 31.311 32.311 3.7662 0 0 0 0.53105 1 4263 4263 0.15932 0.064481 1 53957 13142 33667 33685 62225 62225 0.08902790661977633 WKELEQKP 8 Unmodified _WKELEQKP_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1639209-1640976:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MSMS UPN46_class_I_Rep_3 1 528.818359375 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 70.211 1 70.211 69.711 70.711 0 0 0 0 0.40625 1 16124 16124 2.3027 0 1 53958 4325 33668 33686 62226 62226 0.034377429602727716 WKFICYQEG 9 Unmodified _WKFICYQEG_ 0 0 0 REV__MLT1A1_dup5753|chr15:57121367-57121809:+|1.08838867196698|0.0094121831773015|6.85|151.0|28|3|anti-sense REV__MLT1A1_dup5753|chr15:57121367-57121809:+|1.08838867196698|0.0094121831773015|6.85|151.0|28|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 587.2734375 2 587.273509 1172.53247 -0.41257 -0.00024229 0.1261 7.4054E-05 -0.28648 -0.00016824 587.273544757422 14.806 0.28149 18.176 18.072 18.354 3.3697 56 34 2 0 0 0 0.48846 1 658 658 1.8442 0 1 56258 + 53959 31611 33669 33687 62227 62227 -0.04689903291455266 WKFRKVLF 8 Unmodified _WKFRKVLF_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MSMS UPN48_class_I_Rep_1 5 562.3443603515625 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 80.84 1 84.402 83.902 84.902 3.5624 0 0 0 0.40746 1 19267 19267 0.69038 0 1 53960 2245 33670 33688 62228 62228 0.11379213090117446 WKFRKVLF 8 Unmodified _WKFRKVLF_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MSMS UPN48_class_I_Rep_1 5 562.3436889648438 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 81.12 1 84.682 84.182 85.182 3.5624 0 0 0 0.40746 1 19337 19337 0.69038 0 1 53961 2245 33670 33688 62229 62229 0.11379213090117446 WKFRKVLF 8 Unmodified _WKFRKVLF_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MSMS UPN48_class_I_Rep_2 6 562.3439331054688 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 80.864 1 84.521 84.021 85.021 3.6567 0 0 0 0.40746 1 19185 19185 0.69038 0 1 53962 2245 33670 33688 62230 62230 0.11379213090117446 WKFRKVLF 8 Unmodified _WKFRKVLF_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MSMS UPN48_class_I_Rep_2 6 562.343505859375 2 562.342387 1122.67022 NaN NaN NaN NaN NaN NaN NaN 81.057 1 84.713 84.213 85.213 3.6567 0 0 0 0.40746 1 19234 19234 0.69038 0 1 53963 2245 33670 33688 62231 62231 0.11379213090117446 WKFTVVYL 8 Unmodified _WKFTVVYL_ 0 0 0 REV__L1PA15_dup2962|chr6:30297375-30297762:-|1.8385961560758135|0.2260425818812862|3.02|151.0|11|3|sense REV__L1PA15_dup2962|chr6:30297375-30297762:-|1.8385961560758135|0.2260425818812862|3.02|151.0|11|3|sense MSMS UPN48_class_I_Rep_1 5 528.2947998046875 2 528.299853 1054.58515 NaN NaN NaN NaN NaN NaN NaN 93.624 1 97.245 96.745 97.745 3.6208 0 0 0 0.40738 1 22505 22505 0.79363 0 1 + 53964 29236 33671 33689 62232 62232 0.06004422833666467 WKGGKGQQQD 10 Unmodified _WKGGKGQQQD_ 0 0 0 ENST00000407594.2_1_2:132201573-132201807:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENST00000407594.2_1_2:132201573-132201807:-|nuORF ENST00000407594.2_1_2:132201573-132201807:-|nuORF MSMS UPN47_class_I_Rep_1 2 566.2828979492188 2 566.280712 1130.54687 NaN NaN NaN NaN NaN NaN NaN 29.325 1 33.082 32.582 33.582 3.7578 0 0 0 0.53105 1 4642 4642 1.1933 0.39971 1 53965 6619 33672 33690 62233 62233 -0.013181148189460146 WKGLHAAS 8 Unmodified _WKGLHAAS_ 0 0 0 REV__ENSG00000176142|ENST00000319172|TMEM39A REV__ENSG00000176142|ENST00000319172|TMEM39A MSMS UPN48_class_I_Rep_3 7 435.2510681152344 2 435.235045 868.455536 NaN NaN NaN NaN NaN NaN NaN 69.571 1 73.084 72.584 73.584 3.5128 0 0 0 0.4044 1 16037 16037 4.756 0.42677 1 + 53966 20579 33673 33691 62234 62234 0.016046662743633533 WKGQFEKK 8 Unmodified _WKGQFEKK_ 0 0 0 REV__ENST00000489520.2_1_12:66151931-66152630:-|nuORF REV__ENST00000489520.2_1_12:66151931-66152630:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 526.3612060546875 2 525.790184 1049.56581 0.38856 0.0002043 -0.72146 -0.00037934 -0.33291 -0.00017504 525.7897794154934 33.344 0.12883 37.005 36.923 37.052 3.6607 14 13 2 0 0 0 0.72333 1 5262 5262 2.3027 0.4585 1 52797 + 53967 22620 33674 33692 62235 62235 0.04301466542756316 WKGQKKLS 8 Unmodified _WKGQKKLS_ 0 0 0 L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|11|1|sense L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|11|1|sense L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 487.7903137207031 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 79.456 1 79.456 78.956 79.956 0 0 0 0 0.40625 1 18666 18666 2.3027 0 1 53968 13296 33675 33693 62236 62236 0.08305770405377189 WKHAFPLK 8 Unmodified _WKHAFPLK_ 0 0 0 L1PA13_dup7148|chr13:20038263-20039473:-|3.1236692087494733|0.207681151184394|3.91|150.0|12|2|sense L1PA13_dup7148|chr13:20038263-20039473:-|3.1236692087494733|0.207681151184394|3.91|150.0|12|2|sense L1PA13_dup7148|chr13:20038263-20039473:-|3.1236692087494733|0.207681151184394|3.91|150.0|12|2|sense MSMS UPN48_class_I_Rep_2 6 513.7984008789062 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 87.37 1 91.098 90.598 91.598 3.7279 0 0 0 0.40746 1 20789 20789 0.69038 0 1 53969 13792 33676 33694 62237 62237 0.06930378130596182 WKHRRKNIQ 9 Unmodified _WKHRRKNIQ_ 0 0 0 ENST00000551685.2_1_12:43963803-43964301:-|nuORF ENST00000551685.2_1_12:43963803-43964301:-|nuORF ENST00000551685.2_1_12:43963803-43964301:-|nuORF MSMS UPN47_class_I_Rep_2 3 633.3690185546875 2 633.37053 1264.72651 NaN NaN NaN NaN NaN NaN NaN 85.964 1 89.397 88.897 89.897 3.4329 0 0 0 0.39518 1 21385 21385 1.8442 0.6509 1 53970 7400 33677 33695 62238 62238 0.10473233979519136 WKILIYLSKKL 11 Unmodified _WKILIYLSKKL_ 0 0 0 L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense MSMS UPN48_class_I_Rep_1 5 468.9707946777344 3 468.970758 1403.89044 NaN NaN NaN NaN NaN NaN NaN 48.794 1 52.318 51.818 52.818 3.5239 0 0 0 0.38417 1 9792 9792 0.45452 0 1 53971 10810 33678 33696 62239 62239 0.20465393906988538 WKILIYLSKKL 11 Unmodified _WKILIYLSKKL_ 0 0 0 L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense MSMS UPN48_class_I_Rep_2 6 469.30548095703125 3 468.970758 1403.89044 NaN NaN NaN NaN NaN NaN NaN 48.9 1 52.617 52.117 53.117 3.7175 0 0 0 0.38417 1 9821 9821 0.45452 0 1 53972 10810 33678 33696 62240 62240 0.20465393906988538 WKILIYLSKKL 11 Unmodified _WKILIYLSKKL_ 0 0 0 L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 468.9713439941406 3 468.970758 1403.89044 0.11468 5.3781E-05 0.68826 0.00032278 0.80294 0.00037656 468.9710621016604 48.424 0.52509 52.058 51.678 52.203 3.6339 62 35 2 0 0 0 0.68081 1 9602 9602 0.45452 0 1 139410 53973 10810 33678 33696 62241 62241 0.20465393906988538 WKILIYLSKKL 11 Unmodified _WKILIYLSKKL_ 0 0 0 L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense L1MB7_dup22705|chr22:42056885-42057501:-|1.5397369776129224|0.2654594952028488|2.54|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 469.305419921875 3 468.970758 1403.89044 0.11094 5.2026E-05 0.6103 0.00028621 0.72123 0.00033824 469.3054647836671 48.615 0.30467 52.244 52.131 52.436 3.6291 37 23 2 0 0 0 0.68081 1 9654 9654 0.45452 0 1 168080 53974 10810 33678 33696 62242 62242 0.20465393906988538 WKINGYYI 8 Unmodified _WKINGYYI_ 0 0 0 REV__L1MB8_dup3382|chr3:171657519-171658827:+|1.4281674320657989|0.1462603407569014|3.29|151.0|42|3|sense REV__L1MB8_dup3382|chr3:171657519-171658827:+|1.4281674320657989|0.1462603407569014|3.29|151.0|42|3|sense MSMS UPN47_class_I_Rep_2 3 528.77978515625 2 528.779285 1055.54402 NaN NaN NaN NaN NaN NaN NaN 114.11 1 117.62 117.12 118.12 3.5109 0 0 0 0.40738 1 27777 27777 0.79363 0 1 + 53975 26409 33679 33697 62243 62243 0.018466617941840013 WKITDAELEA 10 Unmodified _WKITDAELEA_ 0 0 0 nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1 nc|ENSG00000074803|Q13621-3|SLC12A1 nc|ENSG00000074803|Q13621-3|SLC12A1 MSMS UPN48_class_I_Rep_2 6 588.3010864257812 2 588.300778 1174.587 NaN NaN NaN NaN NaN NaN NaN 37.773 1 41.489 40.989 41.989 3.7164 0 0 0 0.53105 1 6503 6503 1.4819 0.28856 1 53976 1135 33680 33698 62244 62244 0.006693870609524311 WKIWCDWWQ 9 Unmodified _WKIWCDWWQ_ 0 0 0 REV__L1PB1_dup12805|chr21:38429755-38430473:-|1.3377279755372773|0.0304197072125728|5.46|147.0|37|3|anti-sense REV__L1PB1_dup12805|chr21:38429755-38430473:-|1.3377279755372773|0.0304197072125728|5.46|147.0|37|3|anti-sense MSMS UPN47_class_I_Rep_1 2 450.8858947753906 3 450.874459 1349.60155 NaN NaN NaN NaN NaN NaN NaN 110.85 1 114.43 113.93 114.93 3.5835 0 0 0 0.40191 1 27329 27329 0.23584 0.095952 1 + 53977 30350 33681 33699 62245 62245 -0.059268192719173385 WKKAIVLLVV 10 Unmodified _WKKAIVLLVV_ 0 0 0 REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|72|2|sense REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|72|2|sense MSMS UPN46_class_I_Rep_3 1 584.8939819335938 2 584.894452 1167.77435 NaN NaN NaN NaN NaN NaN NaN 20.4 1 20.4 19.9 20.9 0 0 0 0 0.53105 1 2114 2114 0 0 1 + 53978 27307 33682 33700 62246 62246 0.19717495126974427 WKKAKAKQ 8 Unmodified _WKKAKAKQ_ 0 0 0 THE1D_dup2485|chr3:158830181-158830550:+|2.0235731142107527|0.4554635886171101|2.15|151.0|15|1|anti-sense THE1D_dup2485|chr3:158830181-158830550:+|2.0235731142107527|0.4554635886171101|2.15|151.0|15|1|anti-sense THE1D_dup2485|chr3:158830181-158830550:+|2.0235731142107527|0.4554635886171101|2.15|151.0|15|1|anti-sense MSMS UPN48_class_I_Rep_3 7 494.30731201171875 2 494.308544 986.602535 NaN NaN NaN NaN NaN NaN NaN 79.562 1 83.204 82.704 83.704 3.6423 0 0 0 0.40746 1 18867 18867 0.69038 0 1 53979 32950 33683 33701 62247 62247 0.10869763159314516 WKKATFLS 8 Unmodified _WKKATFLS_ 0 0 0 REV__L1ME3A_dup3665|chr3:196045693-196046261:-|1.0678659403562782|0.0672329823279773|3.99|151.0|29|1|anti-sense REV__L1ME3A_dup3665|chr3:196045693-196046261:-|1.0678659403562782|0.0672329823279773|3.99|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7820739746094 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 27.506 1 31.068 30.568 31.568 3.5629 0 0 0 0.40746 1 3550 3550 0.69038 0 1 + 53980 28015 33684 33702 62248 62248 0.05850965656793505 WKKFVKFM 8 Unmodified _WKKFVKFM_ 0 0 0 ENSG00000163617|ENST00000295878|CCDC191 ENSG00000163617|ENST00000295878|CCDC191 ENSG00000163617|ENST00000295878|CCDC191 MSMS UPN47_class_I_Rep_3 4 557.3198852539062 2 557.317523 1112.62049 NaN NaN NaN NaN NaN NaN NaN 99.383 1 102.83 102.33 103.33 3.4483 0 0 0 0.40746 1 24577 24577 0.69038 0.088878 1 53981 4020 33685 33703 62249 62249 0.0686876208983449 WKKHLHMY 8 Unmodified _WKKHLHMY_ 0 0 0 L1ME4b_dup11302|chr9:90868479-90869191:+|2.4884112613881104|0.0811390202307011|4.94|151.0|35|1|anti-sense L1ME4b_dup11302|chr9:90868479-90869191:+|2.4884112613881104|0.0811390202307011|4.94|151.0|35|1|anti-sense L1ME4b_dup11302|chr9:90868479-90869191:+|2.4884112613881104|0.0811390202307011|4.94|151.0|35|1|anti-sense MSMS UPN48_class_I_Rep_2 6 571.7978515625 2 571.800029 1141.5855 NaN NaN NaN NaN NaN NaN NaN 36.957 1 40.659 40.159 41.159 3.7021 0 0 0 0.40738 1 6268 6268 0.79363 0.10326 1 53982 12883 33686 33704 62250 62250 0.020375192818619325 WKKIAKKKKKK 11 Unmodified _WKKIAKKKKKK_ 0 0 0 REV__L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|18|2|sense REV__L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|18|2|sense MSMS UPN46_class_I_Rep_3 1 471.7957458496094 3 471.99753 1412.97076 NaN NaN NaN NaN NaN NaN NaN 85.639 1 85.639 85.139 86.139 0 0 0 0 0.38417 1 20439 20439 0 0 1 + 53983 30005 33687 33705 62251 62251 0.2807930002070407 WKKIAKKKKKK 11 Unmodified _WKKIAKKKKKK_ 0 0 0 REV__L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|18|2|sense REV__L1PA7_dup11870|chr15:99665317-99666578:+|4.578151280102422|0.4402137034684215|3.38|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 471.75372314453125 3 471.99753 1412.97076 NaN NaN NaN NaN NaN NaN NaN 25.816 1 29.449 28.949 29.949 3.6332 0 0 0 0.38417 1 3196 3196 0 0 1 + 53984 30005 33687 33705 62252 62252 0.2807930002070407 WKKIFHCM 8 Unmodified _WKKIFHCM_ 0 0 0 L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|8|2|sense L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|8|2|sense L1ME4b_dup15487|chr12:118230943-118231345:+|2.074124230307387|0.0090838074930004|7.83|151.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 546.779296875 2 546.777708 1091.54086 NaN NaN NaN NaN NaN NaN NaN 28.294 1 32.06 31.56 32.56 3.7662 0 0 0 0.40738 1 4337 4337 0.79363 0 1 53985 12892 33688 33706 62253 62253 -0.0012462785584830272 WKKINFFF 8 Unmodified _WKKINFFF_ 0 0 0 REV__L1MC2_dup2870|chr8:47534792-47537880:+|3.812021986168285|0.032698787306794|6.87|151.0|177|2|anti-sense REV__L1MC2_dup2870|chr8:47534792-47537880:+|3.812021986168285|0.032698787306794|6.87|151.0|177|2|anti-sense MSMS UPN47_class_I_Rep_1 2 565.3150024414062 2 565.313295 1128.61204 NaN NaN NaN NaN NaN NaN NaN 21.836 1 25.511 25.011 26.011 3.6749 0 0 0 0.40746 1 2437 2437 0.69038 0.16561 1 + 53986 26650 33689 33707 62254 62254 0.052875314448328936 WKKIWRFLKK 10 Unmodified _WKKIWRFLKK_ 0 0 0 L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|9|1|sense L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|9|1|sense L1MA10_dup3246|chr10:73127650-73128990:-|3.0484825487890936|0.4245598131326042|2.84|151.0|9|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 478.3027648925781 3 478.302842 1431.8867 0.20727 9.914E-05 -0.32941 -0.00015756 -0.12213 -5.8416E-05 478.3025998673249 65.356 1.4379 68.811 68.288 69.726 3.4541 158 104 2 0 0 0 0.56454 1 14890 14890 0.62683 0.21856 1 1143100 53987 9315 33690 33708 62255 62255 0.18802768923796975 WKKKKGPH 8 Unmodified _WKKKKGPH_ 0 0 0 L1PA5_dup6357|chr9:91282637-91285469:+|2.3089187402591143|0.3922222261460613|2.56|151.0|17|1|sense L1PA5_dup6357|chr9:91282637-91285469:+|2.3089187402591143|0.3922222261460613|2.56|151.0|17|1|sense L1PA5_dup6357|chr9:91282637-91285469:+|2.3089187402591143|0.3922222261460613|2.56|151.0|17|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 504.8086853027344 2 504.808711 1007.60287 0.14391 7.2646E-05 0.039585 1.9983E-05 0.18349 9.2629E-05 504.8086106607661 34.122 0.13875 34.122 34.013 34.151 0 9 8 2 0 0 0 0.82752 1 6061 6061 0.69038 0 1 457250 53988 14506 33691 33709 62256 62256 0.09937182879173179 WKKLFANL 8 Unmodified _WKKLFANL_ 0 0 0 L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|16|2|sense L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|16|2|sense L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.3032531738281 2 510.30547 1018.59639 0.2865 0.0001462 -1.3942 -0.00071146 -1.1077 -0.00056526 510.3031237596549 110.96 0.13597 114.62 114.6 114.74 3.6654 26 16 3 0 0 0 0.82752 1 26329 26329 2.3027 0 1 197300 53989 10923 33692 33710 62257 62257 0.08783244927781197 WKKLFANL 8 Unmodified _WKKLFANL_ 0 0 0 L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|16|2|sense L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|16|2|sense L1MB8_dup1219|chr2:26103579-26104737:-|1.1864903496807409|0.1695057448841048|2.81|151.0|16|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 510.30547 1018.59639 0.31899 0.00016278 -4.2481 -0.0021678 -3.9291 -0.002005 510.30313337456846 111.19 0.053345 114.85 114.81 114.87 3.6666 0.11523 -0.00027697 NaN 2.3027 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 39965 53990 10923 33692 33710 0.08783244927781197 WKKLKKWLI 9 Unmodified _WKKLKKWLI_ 0 0 0 REV__ENSG00000137225|ENST00000398776|CAPN11 REV__ENSG00000137225|ENST00000398776|CAPN11 MULTI-SECPEP UPN47_class_I_Rep_3 4 414.26947021484375 3 414.941021 1241.80123 -0.59584 -0.00024724 -4.3173 -0.0017914 -4.9132 -0.0020387 415.27284602449095 116.35 0.16483 119.81 119.71 119.87 3.462 21 18 2 0 0 0 0.12545 1 28604 28604 0.26902 0.1097 1 16629 + 53991 19221 33693 33711 62258 62258 0.1900060373816359 WKKMLLLG 8 Unmodified _WKKMLLLG_ 0 0 0 ENST00000578529.5_1_18:259269-260310:-|nuORF;ENST00000581116.1_1_18:259269-264031:-|nuORF ENST00000578529.5_1_18:259269-260310:-|nuORF ENST00000578529.5_1_18:259269-260310:-|nuORF MSMS UPN46_class_I_Rep_3 1 494.8197937011719 2 494.804248 987.593944 NaN NaN NaN NaN NaN NaN NaN 20.466 1 20.466 19.966 20.966 0 0 0 0 0.40798 1 2134 2134 0 0 1 53992 7545 33694 33712 62259 62259 0.09965073198509344 WKKMQKLA 8 Unmodified _WKKMQKLA_ 0 0 0 REV__L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|32|2|sense REV__L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 516.8056640625 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 47.922 1 51.604 51.104 52.104 3.6819 0 0 0 0.40746 1 10292 10292 0.69038 0 1 + 53993 27503 33695 33713 62260 62260 0.08047287567387684 WKKNLFEL 8 Unmodified _WKKNLFEL_ 0 0 0 L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|253|2|anti-sense L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|253|2|anti-sense L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|253|2|anti-sense MSMS UPN47_class_I_Rep_1 2 539.3087768554688 2 539.30821 1076.60187 NaN NaN NaN NaN NaN NaN NaN 79.274 1 82.719 82.219 83.219 3.4456 0 0 0 0.40746 1 19747 19747 0.69038 0 1 53994 9801 33696 33714 62261 62261 0.066629237196139 WKKRFLHMK 9 Unmodified _WKKRFLHMK_ 0 0 0 ENST00000476943.1_1_13:49956911-49975339:-|nuORF ENST00000476943.1_1_13:49956911-49975339:-|nuORF ENST00000476943.1_1_13:49956911-49975339:-|nuORF MSMS UPN48_class_I_Rep_3 7 637.3706665039062 2 637.371153 1272.72775 NaN NaN NaN NaN NaN NaN NaN 102.45 1 106.22 105.72 106.72 3.776 0 0 0 0.39518 1 24210 24210 1.8442 0.36234 1 53995 6972 33697 33715 62262 62262 0.10229732024026816 WKKRKFRW 8 Unmodified _WKKRKFRW_ 0 0 0 REV__THE1B-int_dup4082|chr20:36994242-36995309:+|1.1673936627768768|0.0417814472807794|4.8|151.0|16|2|sense REV__THE1B-int_dup4082|chr20:36994242-36995309:+|1.1673936627768768|0.0417814472807794|4.8|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 617.8719482421875 2 617.869634 1233.72472 NaN NaN NaN NaN NaN NaN NaN 94.472 1 98.093 97.593 98.593 3.6208 0 0 0 0.40746 1 22735 22735 0.69038 0 1 + 53996 32272 33698 33716 62263 62263 0.11720224961527492 WKKRKFRW 8 Unmodified _WKKRKFRW_ 0 0 0 REV__THE1B-int_dup4082|chr20:36994242-36995309:+|1.1673936627768768|0.0417814472807794|4.8|151.0|16|2|sense REV__THE1B-int_dup4082|chr20:36994242-36995309:+|1.1673936627768768|0.0417814472807794|4.8|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 617.8723754882812 2 617.869634 1233.72472 NaN NaN NaN NaN NaN NaN NaN 95.474 1 99.09 98.59 99.59 3.6167 0 0 0 0.40746 1 22995 22995 0.69038 0 1 + 53997 32272 33698 33716 62264 62264 0.11720224961527492 WKKRLLKFIW 10 Unmodified _WKKRLLKFIW_ 0 0 0 L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 473.6335144042969 3 473.299209 1416.8758 0.20906 9.8948E-05 0.094926 4.4928E-05 0.30399 0.00014388 473.29914440581246 102.64 0.71883 106.42 106.19 106.9 3.776 215 100 4 0 0 0 0.56523 1 24324 24324 0.13989 0.13989 1 1082900 53998 14312 33699 33717 62265 62265 0.18403366549569 WKKRLLKFIW 10 Unmodified _WKKRLLKFIW_ 0 0 0 L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 473.299209 1416.8758 0.28804 0.00013633 -0.16108 -7.6241E-05 0.12695 6.0086E-05 473.29904741446256 102.72 0.04937 106.24 106.2 106.25 3.5231 -0.12001 -0.00036198 NaN 0.13989 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 72847 53999 14312 33699 33717 0.18403366549569 WKKRLLKFIW 10 Unmodified _WKKRLLKFIW_ 0 0 0 L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 473.299209 1416.8758 0.21543 0.00010196 0.073935 3.4993E-05 0.28936 0.00013695 473.29914906073213 102.63 0.69096 106.34 106.03 106.72 3.7108 -0.023163 -2.8273E-05 NaN 0.13989 251 101 3 NaN NaN NaN NaN 0 NaN NaN 0 1090300 54000 14312 33699 33717 0.18403366549569 WKKRLLKFIW 10 Unmodified _WKKRLLKFIW_ 0 0 0 L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|172|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 473.299209 1416.8758 0.20906 9.8948E-05 0.094926 4.4928E-05 0.30399 0.00014388 473.29914440581246 102.64 0.71883 106.42 106.19 106.9 3.776 0.054407 1.5316E-06 NaN 0.13989 215 100 4 NaN NaN NaN NaN 0 NaN NaN 0 1082900 54001 14312 33699 33717 0.18403366549569 WKKRMPRG 8 Unmodified _WKKRMPRG_ 0 0 0 REV__THE1B-int_dup512|chr2:152737835-152738986:-|1.287728345406843|0.0513297131196885|4.65|151.0|1|1|sense REV__THE1B-int_dup512|chr2:152737835-152738986:-|1.287728345406843|0.0513297131196885|4.65|151.0|1|1|sense MSMS UPN47_class_I_Rep_1 2 529.8056030273438 2 529.805645 1057.59674 NaN NaN NaN NaN NaN NaN NaN 21.229 1 24.872 24.372 25.372 3.6436 0 0 0 0.40798 1 2271 2271 0 0 1 + 54002 32273 33700 33718 62266 62266 0.07024341375995391 WKKRSMLRE 9 Unmodified _WKKRSMLRE_ 0 0 0 ENSG00000162873|ENST00000367155|KLHDC8A ENSG00000162873|ENST00000367155|KLHDC8A ENSG00000162873|ENST00000367155|KLHDC8A MSMS UPN46_class_I_Rep_3 1 617.3461303710938 2 617.347874 1232.6812 NaN NaN NaN NaN NaN NaN NaN 79.31 1 79.31 78.81 79.81 0 0 0 0 0.38478 1 18624 18624 4.3292 0 1 54003 3969 33701 33719 62267 62267 0.07416247402102272 WKKVWQFLT 9 Unmodified _WKKVWQFLT_ 0 0 0 L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|21|2|sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|21|2|sense L1MC3_dup11162|chr15:101216178-101218277:+|4.4266185701838845|0.08877998618866|5.64|151.0|21|2|sense MSMS UPN48_class_I_Rep_3 7 618.3510131835938 2 618.350409 1234.68626 NaN NaN NaN NaN NaN NaN NaN 41.464 1 45.109 44.609 45.609 3.6458 0 0 0 0.39598 1 7492 7492 1.6526 0 1 54004 11298 33702 33720 62268 62268 0.07830874536352894 WKLGVVLFFV 10 Unmodified _WKLGVVLFFV_ 0 0 0 REV__Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|128|3|anti-sense REV__Tigger1_dup2179|chr3:43307335-43309612:+|3.410034707040362|0.1395380726188583|4.61|151.0|128|3|anti-sense MSMS UPN48_class_I_Rep_3 7 604.366455078125 2 604.365527 1206.7165 NaN NaN NaN NaN NaN NaN NaN 102.83 1 106.61 106.11 107.11 3.776 0 0 0 0.53105 1 24299 24299 1.6526 0.17072 1 + 54005 32398 33703 33721 62269 62269 0.12141233201555224 WKLHLPLLF 9 Unmodified _WKLHLPLLF_ 0 0 0 L1MEd_dup4902|chr4:1968128-1968709:+|1.4974506363669895|0.0760736876403657|4.3|151.0|45|3|anti-sense L1MEd_dup4902|chr4:1968128-1968709:+|1.4974506363669895|0.0760736876403657|4.3|151.0|45|3|anti-sense L1MEd_dup4902|chr4:1968128-1968709:+|1.4974506363669895|0.0760736876403657|4.3|151.0|45|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 583.85888671875 2 583.85787 1165.70119 0.52413 0.00030602 1.0532 0.00061491 1.5773 0.00092093 583.8583571664067 93.145 0.049644 93.145 93.1 93.15 0 7 4 2 0 0 0 0.50088 1 22561 22561 0.52476 0 1 114420 54006 13207 33704 33722 62270 62270 0.12496366404366199 WKLKRITVT 9 Unmodified _WKLKRITVT_ 0 0 0 REV__L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|25|3|sense REV__L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|25|3|sense MSMS UPN48_class_I_Rep_3 7 573.28564453125 2 572.863683 1143.71281 NaN NaN NaN NaN NaN NaN NaN 14.478 1 18.012 17.512 18.512 3.5341 0 0 0 0.4029 1 430 430 0 0 1 + 54007 24486 33705 33723 62271 62271 0.14670563427671368 WKLPLLPY 8 Unmodified _WKLPLLPY_ 0 0 0 nc|ENSG00000160703|Q86UT6-2|NLRX1 nc|ENSG00000160703|Q86UT6-2|NLRX1 nc|ENSG00000160703|Q86UT6-2|NLRX1 MSMS UPN46_class_I_Rep_3 1 515.2682495117188 2 515.310221 1028.60589 NaN NaN NaN NaN NaN NaN NaN 40.495 1 40.495 39.995 40.995 0 0 0 0 0.40738 1 7862 7862 0.79363 0 1 54008 16730 33706 33724 62272 62272 0.09273013213351078 WKLQWMHT 8 Unmodified _WKLQWMHT_ 0 0 0 REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|57|3|sense REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|57|3|sense MSMS UPN47_class_I_Rep_2 3 565.2827758789062 2 565.284211 1128.55387 NaN NaN NaN NaN NaN NaN NaN 20.613 1 24.021 23.521 24.521 3.4074 0 0 0 0.40746 1 2172 2172 0.69038 0.088878 1 + 54009 25152 33707 33725 62273 62273 -0.0052647347208676365 WKLRRLLHF 9 Unmodified _WKLRRLLHF_ 0 0 0 REV__AluJo_dup33324|chr8:47785452-47785750:+|1.151885104897684|0.1795833593626514|2.68|151.0|9|2|sense REV__AluJo_dup33324|chr8:47785452-47785750:+|1.151885104897684|0.1795833593626514|2.68|151.0|9|2|sense MSMS UPN48_class_I_Rep_2 6 423.5972595214844 3 423.596137 1267.76658 NaN NaN NaN NaN NaN NaN NaN 98.568 1 102.34 101.84 102.84 3.7707 0 0 0 0.38299 1 23415 23415 2.7352 0.65123 1 + 54010 16994 33708 33726 62274 62274 0.1434078065005906 WKLTRCNR 8 Unmodified _WKLTRCNR_ 0 0 0 REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|7|1|sense REV__PRIMA4-int_dup293|chr12:31309967-31310870:-|2.15730787931759|0.0524917379979737|5.36|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 538.7933959960938 2 538.792735 1075.57092 NaN NaN NaN NaN NaN NaN NaN 67.772 1 67.772 67.272 68.272 0 0 0 0 0.40643 1 15438 15438 2.0598 0 1 + 54011 32167 33709 33727 62275 62275 0.03615447133711314 WKLTVITS 8 Unmodified _WKLTVITS_ 0 0 0 REV__nc|ENSG00000159110|P48551-2|IFNAR2 REV__nc|ENSG00000159110|P48551-2|IFNAR2 MULTI-MSMS UPN46_class_I_Rep_3 1 474.2821044921875 2 474.28166 946.548768 0.25162 0.00011934 1.9221 0.00091162 2.1737 0.001031 474.28211753348285 108.96 0.50828 108.96 108.88 109.38 0 93 33 3 0 0 0 0.82752 2 26692 26692;26751 14.838 3.7301 1 80891000 + 54012 19858 33710 33728 62276;62277 62276 0.07335545936939525 WKLWLWMS 8 Unmodified _WKLWLWMS_ 0 0 0 ENST00000476656.1_1_6:70589459-70599853:+|nuORF;ENSG00000082293|ENST00000620364|COL19A1 ENST00000476656.1_1_6:70589459-70599853:+|nuORF ENST00000476656.1_1_6:70589459-70599853:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 575.2982788085938 2 575.29933 1148.58411 0.39588 0.00022775 -1.3797 -0.00079376 -0.98386 -0.00056602 575.2982565065082 59.558 0.72498 62.957 62.651 63.376 3.3982 80 46 2 0 0 0 0.82752 1 13844 13844 13.508 5.5977 1 174920 54013 1224 33711 33729 62278 62278 0.015758851930968376 WKLWLWMS 8 Unmodified _WKLWLWMS_ 0 0 0 ENST00000476656.1_1_6:70589459-70599853:+|nuORF;ENSG00000082293|ENST00000620364|COL19A1 ENST00000476656.1_1_6:70589459-70599853:+|nuORF ENST00000476656.1_1_6:70589459-70599853:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 574.7951049804688 2 575.29933 1148.58411 0.36307 0.00020887 -1.1244 -0.00064684 -0.76129 -0.00043797 575.2985031190944 59.948 0.84309 63.113 62.764 63.607 3.1651 82 47 2 0 0 0 0.82752 1 14108 14108 8.5933 3.8373 1 155860 54014 1224 33711 33729 62279 62279 0.015758851930968376 WKMKKMKK 8 Unmodified _WKMKKMKK_ 0 0 0 REV__ENST00000369577.7_1_6:87970764-87970800:+|nuORF REV__ENST00000369577.7_1_6:87970764-87970800:+|nuORF MSMS UPN47_class_I_Rep_2 3 554.3298950195312 2 554.330107 1106.64566 NaN NaN NaN NaN NaN NaN NaN 110.83 1 114.36 113.86 114.86 3.5271 0 0 0 0.40798 1 26982 26982 0 0 1 + 54015 21949 33712 33730 62280 62280 0.09660493620754096 WKNFPIRQ 8 Unmodified _WKNFPIRQ_ 0 0 0 REV__L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|98|2|sense REV__L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|98|2|sense MSMS UPN46_class_I_Rep_3 1 544.8029174804688 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 29.038 1 29.038 28.538 29.538 0 0 0 0 0.40625 1 4545 4545 2.3027 0.24298 1 + 54016 29987 33713 33731 62281 62281 0.0524057515392542 WKNFPIRQ 8 Unmodified _WKNFPIRQ_ 0 0 0 REV__L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|98|2|sense REV__L1PA7_dup10881|chr13:48416130-48422515:+|8.359098491560628|0.2572785276736766|5.02|151.0|98|2|sense MSMS UPN46_class_I_Rep_3 1 544.8021240234375 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 29.226 1 29.226 28.726 29.726 0 0 0 0 0.40625 1 4598 4598 2.3027 0.24298 1 + 54017 29987 33713 33731 62282 62282 0.0524057515392542 WKNFTKHK 8 Unmodified _WKNFTKHK_ 0 0 0 REV__L1M5_dup41280|chr13:40977773-40978082:+|1.935336998600664|0.0570107034526538|5.09|151.0|10|3|sense REV__L1M5_dup41280|chr13:40977773-40978082:+|1.935336998600664|0.0570107034526538|5.09|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 544.8021240234375 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 29.247 1 29.247 28.747 29.747 0 0 0 0 0.40659 1 4604 4604 1.8442 0 1 + 54018 24675 33714 33732 62283 62283 0.0524057515392542 WKNFTKHK 8 Unmodified _WKNFTKHK_ 0 0 0 REV__L1M5_dup41280|chr13:40977773-40978082:+|1.935336998600664|0.0570107034526538|5.09|151.0|10|3|sense REV__L1M5_dup41280|chr13:40977773-40978082:+|1.935336998600664|0.0570107034526538|5.09|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 544.8021850585938 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 29.423 1 29.423 28.923 29.923 0 0 0 0 0.40501 1 4657 4657 3.9444 1.3669 1 + 54019 24675 33714 33732 62284 62284 0.0524057515392542 WKNFTKHK 8 Unmodified _WKNFTKHK_ 0 0 0 REV__L1M5_dup41280|chr13:40977773-40978082:+|1.935336998600664|0.0570107034526538|5.09|151.0|10|3|sense REV__L1M5_dup41280|chr13:40977773-40978082:+|1.935336998600664|0.0570107034526538|5.09|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 544.8024291992188 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 29.732 1 29.732 29.232 30.232 0 0 0 0 0.40659 1 4749 4749 1.8442 0 1 + 54020 24675 33714 33732 62285 62285 0.0524057515392542 WKNGARKL 8 Unmodified _WKNGARKL_ 0 0 0 Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|117|1|anti-sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|117|1|anti-sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|117|1|anti-sense MSMS UPN47_class_I_Rep_1 2 486.7904052734375 2 486.790518 971.566484 NaN NaN NaN NaN NaN NaN NaN 33.618 1 37.316 36.816 37.816 3.6983 0 0 0 0.40746 1 5943 5943 0.69038 0 1 54021 33185 33715 33733 62286 62286 0.0795630598245225 WKNGARKL 8 Unmodified _WKNGARKL_ 0 0 0 Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|117|1|anti-sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|117|1|anti-sense Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|117|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.7900390625 2 486.790518 971.566484 0.13883 6.7579E-05 -0.33162 -0.00016143 -0.1928 -9.3852E-05 486.79034258529623 34.874 0.45913 38.546 38.402 38.861 3.6721 88 51 2 0 0 0 0.82752 1 5581 5581 0.69038 0 1 136070 54022 33185 33715 33733 62287 62287 0.0795630598245225 WKPLWRCC 8 Unmodified _WKPLWRCC_ 0 0 0 MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|53|1|anti-sense MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|53|1|anti-sense MSTD-int_dup369|chr8:92895336-92896805:+|2.213406325437384|0.1730475982525923|3.68|151.0|53|1|anti-sense MSMS UPN46_class_I_Rep_3 1 546.2673950195312 2 546.267507 1090.52046 NaN NaN NaN NaN NaN NaN NaN 28.819 1 28.819 28.319 29.319 0 0 0 0 0.40746 1 4479 4479 0.69038 0 1 54023 16602 33716 33734 62288 62288 -0.02117798515632785 WKPPPTFQ 8 Unmodified _WKPPPTFQ_ 0 0 0 MER4A1_dup923|chr7:149604105-149604568:-|1.1305944953027305|0.1452184627394238|2.96|151.0|8|2|sense MER4A1_dup923|chr7:149604105-149604568:-|1.1305944953027305|0.1452184627394238|2.96|151.0|8|2|sense MER4A1_dup923|chr7:149604105-149604568:-|1.1305944953027305|0.1452184627394238|2.96|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 500.76617431640625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 111.62 1 115.28 114.78 115.78 3.6614 0 0 0 0.40604 1 26496 26496 2.5775 0 1 54024 16020 33717 33735 62289 62289 0.018023926226987896 WKPRHYIN 8 Unmodified _WKPRHYIN_ 0 0 0 REV__L1MD3_dup1387|chr5:294035-295012:+|1.572373021651729|0.485378563885286|1.7|151.0|10|2|sense REV__L1MD3_dup1387|chr5:294035-295012:+|1.572373021651729|0.485378563885286|1.7|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 557.3018798828125 2 557.30125 1112.58795 NaN NaN NaN NaN NaN NaN NaN 28.154 1 31.785 31.285 32.285 3.6311 0 0 0 0.40746 1 3837 3837 0.69038 0 1 + 54025 27468 33718 33736 62290 62290 0.03615691011191302 WKQEFRTL 8 Unmodified _WKQEFRTL_ 0 0 0 ENSG00000091106|ENST00000402280|NLRC4 ENSG00000091106|ENST00000402280|NLRC4 ENSG00000091106|ENST00000402280|NLRC4 MULTI-MSMS UPN47_class_I_Rep_2 3 554.3009643554688 2 554.300916 1106.58728 0.36521 0.00020244 -0.762 -0.00042238 -0.39679 -0.00021994 554.3004053872537 65.768 0.20659 69.027 68.89 69.096 3.2588 14 10 2 0 0 0 0.82752 1 15753 15753 3.5965 0.31518 1 72422 54026 1366 33719 33737 62291 62291 0.038248515714712994 WKQIFRVNA 9 Unmodified _WKQIFRVNA_ 0 0 0 L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|70|2|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|70|2|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|70|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.3305053710938 2 581.330008 1160.64546 0.33231 0.00019318 -0.32393 -0.00018831 0.008376 4.8692E-06 581.329419341257 66.973 0.081818 70.334 70.296 70.378 3.3611 9 6 2 0 0 0 0.46869 1 16086 16086 3.9444 0 1 35370 54027 11445 33720 33738 62292 62292 0.07156533216766547 WKQIFRVNA 9 Unmodified _WKQIFRVNA_ 0 0 0 L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|70|2|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|70|2|anti-sense L1MC4_dup20184|chr15:56972175-56973336:+|1.8825890592518304|0.0212633734775708|6.47|151.0|70|2|anti-sense MSMS UPN47_class_I_Rep_2 3 581.791748046875 2 581.330008 1160.64546 NaN NaN NaN NaN NaN NaN NaN 67.708 1 70.972 70.472 71.472 3.2636 0 0 0 0.39518 1 16343 16343 1.8442 0 1 54028 11445 33720 33738 62293 62293 0.07156533216766547 WKQSSLPTI 9 Unmodified _WKQSSLPTI_ 0 0 0 nc|ENSG00000204632|P17693-2|HLA-G;ENSG00000204632|ENST00000360323|HLA-G nc|ENSG00000204632|P17693-2|HLA-G nc|ENSG00000204632|P17693-2|HLA-G MSMS UPN47_class_I_Rep_3 4 530.3134155273438 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 59.203 1 62.369 61.869 62.869 3.1658 0 0 0 0.38639 1 13815 13815 3.9444 0.3479 1 54029 5534 33721 33739 62294 62294 0.049100294773325004 WKRGGKFL 8 Unmodified _WKRGGKFL_ 0 0 0 L1MC3_dup6194|chr8:60540920-60541390:+|1.3659483838665938|0.0115428887412271|6.89|150.0|11|3|sense L1MC3_dup6194|chr8:60540920-60541390:+|1.3659483838665938|0.0115428887412271|6.89|150.0|11|3|sense L1MC3_dup6194|chr8:60540920-60541390:+|1.3659483838665938|0.0115428887412271|6.89|150.0|11|3|sense MSMS UPN47_class_I_Rep_1 2 496.2946472167969 2 496.295436 990.57632 NaN NaN NaN NaN NaN NaN NaN 72.344 1 75.724 75.224 76.224 3.3799 0 0 0 0.40404 1 17696 17696 5.2307 0 1 54030 11361 33722 33740 62295 62295 0.08065493987851369 WKRHRKMP 8 Unmodified _WKRHRKMP_ 0 0 0 REV__L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|118|3|sense REV__L1M1_dup9245|chr20:34797881-34801682:+|2.943326806808536|0.0703334080152406|5.39|151.0|118|3|sense MSMS UPN47_class_I_Rep_3 4 569.8240356445312 2 569.824369 1137.63419 NaN NaN NaN NaN NaN NaN NaN 13.198 1 16.572 16.072 17.072 3.3734 0 0 0 0.40798 1 260 260 0 0 1 + 54031 24165 33723 33741 62296 62296 0.07087432641628766 WKRHSIVSY 9 Unmodified _WKRHSIVSY_ 0 0 0 REV__MSTC_dup2003|chr10:11304387-11304798:-|1.1074299173853326|0.0103202485962955|6.75|150.0|7|1|sense REV__MSTC_dup2003|chr10:11304387-11304798:-|1.1074299173853326|0.0103202485962955|6.75|150.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 588.3195190429688 2 588.31964 1174.62473 NaN NaN NaN NaN NaN NaN NaN 68.168 1 71.533 71.033 72.033 3.3646 0 0 0 0.39518 1 16438 16438 1.8442 0.36234 1 + 54032 31915 33724 33742 62297 62297 0.0443994283707525 WKRIPVVVY 9 Unmodified _WKRIPVVVY_ 0 0 0 ENST00000580983.1_1_17:56585520-56588860:-|nuORF;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 ENST00000580983.1_1_17:56585520-56588860:-|nuORF ENST00000580983.1_1_17:56585520-56588860:-|nuORF MSMS UPN46_class_I_Rep_3 1 579.9096069335938 2 580.352951 1158.69135 NaN NaN NaN NaN NaN NaN NaN 58.592 1 58.592 58.092 59.092 0 0 0 0 0.39428 1 12906 12906 2.0598 0 1 54033 1863 33725 33743 62298 62298 0.11835178398973767 WKRKAAKRRG 10 Unmodified _WKRKAAKRRG_ 0 0 0 REV__nc|ENSG00000197879|O00159-2|MYO1C REV__nc|ENSG00000197879|O00159-2|MYO1C MSMS UPN48_class_I_Rep_3 7 628.89404296875 2 628.894172 1255.77379 NaN NaN NaN NaN NaN NaN NaN 27.93 1 31.68 31.18 32.18 3.7491 0 0 0 0.53105 1 3732 3732 0 0 1 + 54034 21102 33726 33744 62299 62299 0.15613513250468714 WKRKLKTPTP 10 Unmodified _WKRKLKTPTP_ 0 0 0 REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|41|2|sense REV__HERVIP10F-int_dup24|chr1:246748037-246751121:-|2.468868189349352|0.1469352211206891|4.07|151.0|41|2|sense MSMS UPN48_class_I_Rep_2 6 627.8853759765625 2 627.88769 1253.76083 NaN NaN NaN NaN NaN NaN NaN 103.8 1 107.5 107 108 3.6991 0 0 0 0.53105 1 24565 24565 9.3831 3.6513 1 + 54035 23758 33727 33745 62300 62300 0.1440963734773959 WKRKLWNNIP 10 Unmodified _WKRKLWNNIP_ 0 0 0 L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|17|2|sense L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|17|2|sense L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|17|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.26348876953125 3 452.262935 1353.76697 0.17101 7.734E-05 0.17189 7.7738E-05 0.3429 0.00015508 452.263024106249 60.151 0.5848 63.625 63.25 63.835 3.4737 73 42 3 0 0 0 0.56523 1 13196 13196 0.13989 0.017027 1 144620 54036 10423 33728 33746 62301 62301 0.10424155579289618 WKRKLWNNIP 10 Unmodified _WKRKLWNNIP_ 0 0 0 L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|17|2|sense L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|17|2|sense L1MB3_dup3776|chr3:195408481-195409593:+|1.3909310340316057|0.0069827792489221|7.64|151.0|17|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 452.2624816894531 3 452.262935 1353.76697 0.1593 7.2047E-05 0.014199 6.4216E-06 0.1735 7.8468E-05 452.2629325275126 60.451 0.34369 63.968 63.712 64.056 3.5169 38 29 2 0 0 0 0.84575 1 13232 13232 0.13989 0.13989 1 177650 54037 10423 33728 33746 62302 62302 0.10424155579289618 WKRKPRNR 8 Unmodified _WKRKPRNR_ 0 0 0 HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|29|2|sense HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|29|2|sense HAL1_dup12158|chr8:139810687-139812624:+|1.1363847360396404|0.0226529395695784|5.65|151.0|29|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.8480224609375 2 570.84669 1139.67883 0.16206 9.2513E-05 2.4443 0.0013953 2.6064 0.0014879 570.8478859514514 27.585 0.15231 27.585 27.552 27.704 0 12 9 3 0 0 0 0.82752 1 4125 4125 0.69038 0.088878 1 367040 54038 7789 33729 33747 62303 62303 0.11457579779289517 WKRKSWENR 9 Unmodified _WKRKSWENR_ 0 0 0 HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|35|1|sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|35|1|sense HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|35|1|sense MSMS UPN48_class_I_Rep_3 7 645.3464965820312 2 645.34672 1288.67889 NaN NaN NaN NaN NaN NaN NaN 91.132 1 94.996 94.496 95.496 3.8634 0 0 0 0.37692 1 21609 21609 6.2058 0 1 54039 8016 33730 33748 62304 62304 0.04609534988640007 WKRLLRIDI 9 Unmodified _WKRLLRIDI_ 0 0 0 L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|206|3|anti-sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|206|3|anti-sense L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|206|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 404.8800354003906 3 404.92403 1211.75026 -1.002 -0.00040572 -0.44117 -0.00017864 -1.4431 -0.00058436 404.9238178542997 39.247 0.1829 42.626 42.468 42.651 3.3785 10 9 2 0 0 0 0.12516 1 7666 7666 1.0715 0 1 38826 54040 11022 33731 33749 62305 62305 0.15285654693320794 WKRNRNKL 8 Unmodified _WKRNRNKL_ 0 0 0 L1MC4_dup15624|chr10:76340939-76341506:+|1.3223440463340232|0.0036871085659172|8.49|149.0|17|3|sense L1MC4_dup15624|chr10:76340939-76341506:+|1.3223440463340232|0.0036871085659172|8.49|149.0|17|3|sense L1MC4_dup15624|chr10:76340939-76341506:+|1.3223440463340232|0.0036871085659172|8.49|149.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 557.8316040039062 2 557.833249 1113.65194 -0.40033 -0.00022332 -1.3886 -0.00077462 -1.789 -0.00099794 557.8322405457914 15.9 0.35666 19.266 19.138 19.495 3.3659 46 41 2 0 0 0 0.82752 1 914 914 0.69038 0 1 24952 54041 11411 33732 33750 62306 62306 0.099664711681271 WKRSRRRRRKF 11 Unmodified _WKRSRRRRRKF_ 0 0 0 REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF MSMS UPN48_class_I_Rep_2 6 544.6674194335938 3 544.669581 1630.98691 NaN NaN NaN NaN NaN NaN NaN 83.645 1 87.327 86.827 87.827 3.6814 0 0 0 0.38417 1 19884 19884 0 0 1 + 54042 22166 33733 33751 62307 62307 0.19665819030160492 WKSFWHEP 8 Unmodified _WKSFWHEP_ 0 0 0 REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MSMS UPN48_class_I_Rep_2 6 558.7652587890625 2 558.766709 1115.51886 NaN NaN NaN NaN NaN NaN NaN 19.472 1 23.121 22.621 23.621 3.6497 0 0 0 0.40604 1 1490 1490 2.5775 0 1 + 54043 20768 33734 33752 62308 62308 -0.03427393008382751 WKSHGYKRF 9 Unmodified _WKSHGYKRF_ 0 0 0 REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|45|1|anti-sense REV__THE1A-int_dup69|chr1:145760734-145762300:+|1.1171527287994336|0.0997954663557112|3.48|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_1 5 604.81884765625 2 604.819807 1207.62506 NaN NaN NaN NaN NaN NaN NaN 46.779 1 50.298 49.798 50.798 3.5192 0 0 0 0.39518 1 9172 9172 1.8442 0 1 + 54044 32220 33735 33753 62309 62309 0.029553625569405995 WKSYVYHF 8 Unmodified _WKSYVYHF_ 0 0 0 MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|7|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|7|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|7|2|sense MSMS UPN47_class_I_Rep_2 3 565.2574462890625 2 565.276909 1128.53927 NaN NaN NaN NaN NaN NaN NaN 27.713 1 31.212 30.712 31.712 3.4986 0 0 0 0.40625 1 4201 4201 2.3027 0 1 54045 16467 33736 33754 62310 62310 -0.01986222348591582 WKTRKSRA 8 Unmodified _WKTRKSRA_ 0 0 0 L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|30|2|sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|30|2|sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|30|2|sense MSMS UPN47_class_I_Rep_2 3 516.8064575195312 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 94.938 1 98.41 97.91 98.91 3.472 0 0 0 0.40738 1 23384 23384 0.79363 0 1 54046 11057 33737 33755 62311 62311 0.08431093385456734 WKTRLIRIL 9 Unmodified _WKTRLIRIL_ 0 0 0 REV__ENST00000486447.1_1_2:46851551-46851599:+|nuORF REV__ENST00000486447.1_1_2:46851551-46851599:+|nuORF MSMS UPN48_class_I_Rep_1 5 599.8936157226562 2 599.892775 1197.771 NaN NaN NaN NaN NaN NaN NaN 31.719 1 35.254 34.754 35.754 3.5342 0 0 0 0.40098 1 4728 4728 0.45834 0 1 + 54047 22603 33738 33756 62312 62312 0.18002245072966616 WKTWIFWKTWI 11 Unmodified _WKTWIFWKTWI_ 0 0 0 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 nc|ENSG00000288642|P51861|CDR1 MULTI-MSMS UPN48_class_I_Rep_1 5 532.6239624023438 3 532.29049 1593.84964 0.32611 0.00017358 -1.1801 -0.00062814 -0.85396 -0.00045456 532.2902700134894 46.168 0.74886 49.687 49.421 50.17 3.5192 103 48 3 0 0 0 0.68219 2 9039 8924;9039 0.32927 0.23443 1 336500 54048 16855 33739 33757 62313;62314 62314 0.07647052587390135 WKTYMHHI 8 Unmodified _WKTYMHHI_ 0 0 0 REV__LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|19|1|anti-sense REV__LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|19|1|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2756958007812 2 558.276386 1114.53822 NaN NaN NaN NaN NaN NaN NaN 28.138 1 31.636 31.136 32.136 3.4986 0 0 0 0.40738 1 4325 4325 0.79363 0 1 + 54049 31005 33740 33758 62315 62315 -0.014467599891304417 WKVCIEHH 8 Unmodified _WKVCIEHH_ 0 0 0 nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1 nc|ENSG00000088367|Q9H4G0-4|EPB41L1 nc|ENSG00000088367|Q9H4G0-4|EPB41L1 MSMS UPN47_class_I_Rep_2 3 526.260986328125 2 526.260736 1050.50692 NaN NaN NaN NaN NaN NaN NaN 34.778 1 38.204 37.704 38.704 3.4253 0 0 0 0.40625 1 6332 6332 2.3027 0 1 54050 1311 33741 33759 62316 62316 -0.016313330232378576 WKVGIFLL 8 Unmodified _WKVGIFLL_ 0 0 0 MER51A_dup485|chrX:19640618-19641158:+|1.1068638513188322|0.0072509110181604|7.25|151.0|26|1|anti-sense MER51A_dup485|chrX:19640618-19641158:+|1.1068638513188322|0.0072509110181604|7.25|151.0|26|1|anti-sense MER51A_dup485|chrX:19640618-19641158:+|1.1068638513188322|0.0072509110181604|7.25|151.0|26|1|anti-sense MSMS UPN47_class_I_Rep_3 4 488.3068542480469 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 66.383 1 69.568 69.068 70.068 3.1853 0 0 0 0.40746 1 16007 16007 0.69038 0 1 54051 16082 33742 33760 62317 62317 0.10701030558902858 WKVKAGRS 8 Unmodified _WKVKAGRS_ 0 0 0 AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 466.2774963378906 2 466.277244 930.539935 0.064694 3.0165E-05 -0.0032815 -1.5301E-06 0.061413 2.8635E-05 466.2771343241668 107.79 0.39614 111.42 111.33 111.73 3.6313 84 34 5 0 0 0 0.72333 1 25977 25977 10.824 0 1 121830000 54052 344 33743 33761 62318 62318 0.07188617091139804 WKVKAGRS 8 Unmodified _WKVKAGRS_ 0 0 0 AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 466.277244 930.539935 0.21171 9.8716E-05 -0.20015 -9.3326E-05 0.01156 5.3901E-06 466.2770392996828 107.79 0.2329 111.33 111.25 111.49 3.5345 -0.095233 -0.00017338 NaN 10.824 72 26 4 NaN NaN NaN NaN 0 NaN NaN 0 73847000 54053 344 33743 33761 0.07188617091139804 WKVKAGRS 8 Unmodified _WKVKAGRS_ 0 0 0 AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 466.277244 930.539935 -0.0037559 -1.7513E-06 0.14145 6.5956E-05 0.1377 6.4205E-05 466.2771945980995 107.8 0.18968 111.33 111.26 111.45 3.5382 -0.090892 0.00014519 NaN 10.824 69 22 4 NaN NaN NaN NaN 0 NaN NaN 0 79998000 54054 344 33743 33761 0.07188617091139804 WKVKAGRS 8 Unmodified _WKVKAGRS_ 0 0 0 AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense AluSz_dup2848|chr1:44570792-44571094:+|1.1079403184936376|0.0024543827780377|8.82|147.0|1|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 466.277244 930.539935 0.1967 9.1715E-05 -0.81884 -0.00038181 -0.62215 -0.00029009 466.27693011353836 107.91 0.035278 111.58 111.55 111.59 3.6746 0.15913 -0.00075034 NaN 10.824 11 4 4 NaN NaN NaN NaN 0 NaN NaN 0 1085300 54055 344 33743 33761 0.07188617091139804 WKVKIVHS 8 Unmodified _WKVKIVHS_ 0 0 0 REV__ENSG00000165813|ENST00000369287|CCDC186 REV__ENSG00000165813|ENST00000369287|CCDC186 MSMS UPN47_class_I_Rep_3 4 499.2328186035156 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 25.951 1 29.299 28.799 29.799 3.3478 0 0 0 0.40746 1 3726 3726 0.69038 0 1 + 54056 20137 33744 33762 62319 62319 0.09366360785043071 WKVKTWEKY 9 Unmodified _WKVKTWEKY_ 0 0 0 L1MA8_dup7082|chr10:74717519-74718915:-|1.2703683718927186|0.1411565241968469|3.17|150.0|54|3|sense L1MA8_dup7082|chr10:74717519-74718915:-|1.2703683718927186|0.1411565241968469|3.17|150.0|54|3|sense L1MA8_dup7082|chr10:74717519-74718915:-|1.2703683718927186|0.1411565241968469|3.17|150.0|54|3|sense MSMS UPN47_class_I_Rep_2 3 634.3438110351562 2 634.345323 1266.67609 NaN NaN NaN NaN NaN NaN NaN 63.124 1 66.379 65.879 66.879 3.2558 0 0 0 0.40098 1 14955 14955 0.45834 0 1 54057 10060 33745 33763 62320 62320 0.05342266811135232 WKVLKAER 8 Unmodified _WKVLKAER_ 0 0 0 MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|38|1|anti-sense MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|38|1|anti-sense MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_1 2 515.3130493164062 2 515.313826 1028.6131 NaN NaN NaN NaN NaN NaN NaN 83.217 1 86.756 86.256 87.256 3.5386 0 0 0 0.40746 1 20807 20807 0.69038 0 1 54058 16102 33746 33764 62321 62321 0.09993745813744681 WKVLKWFI 8 Unmodified _WKVLKWFI_ 0 0 0 REV__ENST00000255305.10_3_13:21436952-21442818:-|nuORF REV__ENST00000255305.10_3_13:21436952-21442818:-|nuORF MSMS UPN47_class_I_Rep_3 4 560.33984375 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 95.565 1 98.975 98.475 99.475 3.4095 0 0 0 0.40746 1 23752 23752 0.69038 0 1 + 54059 21533 33747 33765 62322 62322 0.10948694858598174 WKVRVAAI 8 Unmodified _WKVRVAAI_ 0 0 0 ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF ENSG00000164818|ENST00000297440|DNAAF5 ENSG00000164818|ENST00000297440|DNAAF5 MSMS UPN47_class_I_Rep_2 3 471.7965087890625 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 87.97 1 91.417 90.917 91.917 3.4471 0 0 0 0.36148 1 21873 21873 19.439 0 1 54060 4133 33748 33766 62323 62323 0.1079437813059485 WKVRYVLR 8 Unmodified _WKVRYVLR_ 0 0 0 REV__ENST00000371142.8_1_10:98280477-98280525:-|nuORF REV__ENST00000371142.8_1_10:98280477-98280525:-|nuORF MSMS UPN47_class_I_Rep_2 3 560.34228515625 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 79.078 1 82.433 81.933 82.933 3.3554 0 0 0 0.40746 1 19667 19667 0.69038 0 1 + 54061 21959 33749 33767 62324 62324 0.11669427459014514 WKVSDLPR 8 Unmodified _WKVSDLPR_ 0 0 0 nc|ENSG00000204936|Q8N6Q3-3|CD177;nc|ENSG00000204936|Q8N6Q3-2|CD177;nc|ENSG00000204936|Q8N6Q3|CD177;ENSG00000204936|ENST00000618265|CD177 nc|ENSG00000204936|Q8N6Q3-3|CD177 nc|ENSG00000204936|Q8N6Q3-3|CD177 MSMS UPN48_class_I_Rep_2 6 500.78082275390625 2 500.782359 999.550165 NaN NaN NaN NaN NaN NaN NaN 34.948 1 38.622 38.122 39.122 3.6735 0 0 0 0.40625 1 5697 5697 2.3027 0.4585 1 54062 5543 33750 33768 62325 62325 0.05037180025703947 WKVVILKGI 9 Unmodified _WKVVILKGI_ 0 0 0 REV__L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|56|1|anti-sense REV__L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_1 5 528.7734375 2 528.35242 1054.69029 NaN NaN NaN NaN NaN NaN NaN 94.679 1 98.296 97.796 98.796 3.6167 0 0 0 0.4029 1 22788 22788 0 0 1 + 54063 25961 33751 33769 62326 62326 0.1651296403010747 WKWKDGRL 8 Unmodified _WKWKDGRL_ 0 0 0 ENST00000485073.5_1_1:6714077-6740988:-|nuORF ENST00000485073.5_1_1:6714077-6740988:-|nuORF ENST00000485073.5_1_1:6714077-6740988:-|nuORF MSMS UPN46_class_I_Rep_3 1 544.802490234375 2 544.803626 1087.5927 NaN NaN NaN NaN NaN NaN NaN 28.575 1 28.575 28.075 29.075 0 0 0 0 0.40404 1 4407 4407 5.2307 0.47466 1 54064 7028 33752 33770 62327 62327 0.0524057515392542 WKYGFISGF 9 Unmodified _WKYGFISGF_ 0 0 0 L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|215|3|anti-sense L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|215|3|anti-sense L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|215|3|anti-sense MSMS UPN47_class_I_Rep_1 2 552.7791748046875 2 552.779285 1103.54402 NaN NaN NaN NaN NaN NaN NaN 20.785 1 24.428 23.928 24.928 3.6436 0 0 0 0.38478 1 2149 2149 4.3292 0 1 54065 9901 33753 33771 62328 62328 -0.003613382058119896 WKYIIVTV 8 Unmodified _WKYIIVTV_ 0 0 0 L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|38|2|sense L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|38|2|sense L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 511.3058776855469 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 62.41 1 65.669 65.169 66.169 3.2594 0 0 0 0.40157 1 14736 14736 7.2892 0 1 54066 13264 33754 33772 62329 62329 0.09132709350706136 WKYIIVTV 8 Unmodified _WKYIIVTV_ 0 0 0 L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|38|2|sense L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|38|2|sense L1MEf_dup293|chr1:100088862-100090412:+|1.250190046250781|0.1323954535372253|3.24|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 511.3057556152344 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 62.545 1 65.801 65.301 66.301 3.2558 0 0 0 0.32361 1 14778 14778 28.487 0 1 54067 13264 33754 33772 62330 62330 0.09132709350706136 WKYIKKPF 8 Unmodified _WKYIKKPF_ 0 0 0 REV__L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|19|2|sense REV__L1MEc_dup17290|chr18:80120877-80121923:-|1.4768979158444135|0.0995743201007392|3.89|151.0|19|2|sense MSMS UPN46_class_I_Rep_3 1 555.311767578125 2 555.328945 1108.64334 NaN NaN NaN NaN NaN NaN NaN 77.461 1 77.461 76.961 77.961 0 0 0 0 0.40746 1 18107 18107 0.69038 0 1 + 54068 26394 33755 33773 62331 62331 0.0933610447891624 WKYLYYEA 8 Unmodified _WKYLYYEA_ 0 0 0 REV__ENST00000520285.5_1_5:71590560-71616015:-|nuORF REV__ENST00000520285.5_1_5:71590560-71616015:-|nuORF MSMS UPN47_class_I_Rep_1 2 568.2789916992188 2 568.276575 1134.5386 NaN NaN NaN NaN NaN NaN NaN 116.41 1 120.02 119.52 120.52 3.6036 0 0 0 0.40625 1 28828 28828 2.3027 0 1 + 54069 22780 33756 33774 62332 62332 -0.023290617882821607 WLAKLWLQ 8 Unmodified _WLAKLWLQ_ 0 0 0 REV__ENST00000326047.8_1_3:44815907-44819655:+|nuORF REV__ENST00000326047.8_1_3:44815907-44819655:+|nuORF MSMS UPN47_class_I_Rep_3 4 529.3129272460938 2 529.313295 1056.61204 NaN NaN NaN NaN NaN NaN NaN 28.459 1 31.793 31.293 32.293 3.3337 0 0 0 0.40746 1 4464 4464 0.69038 0 1 + 54070 21761 33757 33775 62333 62333 0.08599531444838249 WLALCQWCW 9 Unmodified _WLALCQWCW_ 0 0 0 ENST00000314412.6_1_9:139925322-139925508:-|nuORF ENST00000314412.6_1_9:139925322-139925508:-|nuORF ENST00000314412.6_1_9:139925322-139925508:-|nuORF MSMS UPN47_class_I_Rep_2 3 604.7728881835938 2 604.772622 1207.53069 NaN NaN NaN NaN NaN NaN NaN 20.47 1 23.878 23.378 24.378 3.4074 0 0 0 0.39428 1 2129 2129 2.0598 0.21551 1 54071 6125 33758 33776 62334 62334 -0.06477235581064633 WLALLYVNL 9 Unmodified _WLALLYVNL_ 0 0 0 L1PA7_dup4963|chr6:20592767-20597105:-|2.2343054575988672|0.1017072649623313|4.46|151.0|150|1|anti-sense L1PA7_dup4963|chr6:20592767-20597105:-|2.2343054575988672|0.1017072649623313|4.46|151.0|150|1|anti-sense L1PA7_dup4963|chr6:20592767-20597105:-|2.2343054575988672|0.1017072649623313|4.46|151.0|150|1|anti-sense MSMS UPN46_class_I_Rep_3 1 552.8238525390625 2 552.826235 1103.63792 NaN NaN NaN NaN NaN NaN NaN 77.483 1 77.483 76.983 77.983 0 0 0 0 0.28335 1 18114 18114 11.64 0 1 54072 14837 33759 33777 62335 62335 0.09024380896471484 WLALSLFLRV 10 Unmodified _WLALSLFLRV_ 0 0 0 REV__L1MC4a_dup3470|chr6:4808724-4809466:-|1.0565248238586673|0.0061105654519889|7.43|150.0|25|1|anti-sense REV__L1MC4a_dup3470|chr6:4808724-4809466:-|1.0565248238586673|0.0061105654519889|7.43|150.0|25|1|anti-sense MSMS UPN47_class_I_Rep_2 3 406.5841064453125 3 406.585015 1216.73321 NaN NaN NaN NaN NaN NaN NaN 105.26 1 108.79 108.29 109.29 3.5327 0 0 0 0.53105 1 25538 25538 0.77653 0 1 + 54073 26982 33760 33778 62336 62336 0.13351734087473233 WLAPAFRCRP 10 Unmodified _WLAPAFRCRP_ 0 0 0 REV__ENST00000317204.10_1_11:1297894-1298263:-|nuORF REV__ENST00000317204.10_1_11:1297894-1298263:-|nuORF MSMS UPN47_class_I_Rep_1 2 406.2189636230469 3 406.218449 1215.63352 NaN NaN NaN NaN NaN NaN NaN 43.585 1 47.28 46.78 47.78 3.6951 0 0 0 0.53105 1 8977 8977 1.9064 0.57673 1 + 54074 21718 33761 33779 62337 62337 0.03432593201887357 WLCAHPEL 8 Unmodified _WLCAHPEL_ 0 0 0 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 MSMS UPN47_class_I_Rep_1 2 484.7375793457031 2 484.736563 967.458573 NaN NaN NaN NaN NaN NaN NaN 38.609 1 42.275 41.775 42.775 3.6652 0 0 0 0.39624 1 7459 7459 9.3474 0 1 54075 1828 33762 33780 62338 62338 -0.02645826663126627 WLCAHPEL 8 Unmodified _WLCAHPEL_ 0 0 0 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 MULTI-MSMS UPN47_class_I_Rep_2 3 484.7376708984375 2 484.736563 967.458573 -0.17248 -8.3608E-05 0.98153 0.00047578 0.80905 0.00039217 484.7376297622742 38.891 0.50726 42.269 42.144 42.651 3.3785 51 29 2 0 0 0 0.82752 2 7634 7634;7640 2.5775 0 1 72624 54076 1828 33762 33780 62339;62340 62339 -0.02645826663126627 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 496.277099609375 2 496.277009 990.539466 0.27078 0.00013438 -0.83839 -0.00041607 -0.56761 -0.00028169 496.2764861129331 65.667 0.3494 69.119 68.989 69.339 3.4516 30 24 2 0 0 0 0.82752 2 14953 14953;15009 24.674 3.1369 1 156550 + 54077 22034 33763 33781 62341;62342 62341 0.04381738055406004 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MSMS UPN48_class_I_Rep_1 5 496.27716064453125 2 496.277009 990.539466 NaN NaN NaN NaN NaN NaN NaN 65.511 1 68.963 68.463 69.463 3.4516 0 0 0 0.39624 1 14909 14909 9.3474 1.4373 1 + 54078 22034 33763 33781 62343 62343 0.04381738055406004 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 496.7125549316406 2 496.277009 990.539466 0.27078 0.00013438 -0.83839 -0.00041607 -0.56761 -0.00028169 496.2764861129331 65.667 0.3494 69.119 68.989 69.339 3.4516 30 24 2 0 0 0 0.72333 1 14930 14930 18.135 1.0221 1 156550 + 54079 22034 33763 33781 62344 62344 0.04381738055406004 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 496.27703857421875 2 496.277009 990.539466 0.30749 0.0001526 -1.0524 -0.00052227 -0.74489 -0.00036967 496.27638934552874 65.533 0.44237 69.012 68.746 69.189 3.4792 50 32 2 0 0 0 0.82752 1 14868 14868 13.508 1.2672 1 106990 + 54080 22034 33763 33781 62345 62345 0.04381738055406004 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 496.27667236328125 2 496.277009 990.539466 0.28752 0.00014269 -1.031 -0.00051167 -0.7435 -0.00036898 496.2762995412374 65.389 0.52232 68.897 68.644 69.167 3.5077 56 35 2 0 0 0 0.82752 2 14748 14748;14789 19.439 5.9311 1 171250 + 54081 22034 33763 33781 62346;62347 62346 0.04381738055406004 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 496.277009 990.539466 0.30749 0.0001526 -1.0524 -0.00052227 -0.74489 -0.00036967 496.27638934552874 65.533 0.44237 69.012 68.746 69.189 3.4792 0.0029305 -6.4304E-05 NaN 24.674 50 32 2 NaN NaN NaN NaN 0 NaN NaN 0 106990 + 54082 22034 33763 33781 0.04381738055406004 WLCCLLKL 8 Unmodified _WLCCLLKL_ 0 0 0 REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF REV__ENST00000378954.8_1_2:38545699-38546037:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 496.277009 990.539466 0.28752 0.00014269 -1.031 -0.00051167 -0.7435 -0.00036898 496.2762995412374 65.389 0.52232 68.897 68.644 69.167 3.5077 -0.11244 -4.3102E-05 NaN 24.674 56 35 2 NaN NaN NaN NaN 0 NaN NaN 0 171250 + 54083 22034 33763 33781 0.04381738055406004 WLCEEYFYFFF 11 Unmodified _WLCEEYFYFFF_ 0 0 0 REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|164|1|anti-sense REV__L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|164|1|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8987426757812 3 531.896818 1592.66863 NaN NaN NaN NaN NaN NaN NaN 72.888 1 72.888 72.388 73.388 0 0 0 0 0.38417 1 16870 16870 0.50596 0.41111 1 + 54084 24753 33764 33782 62348 62348 -0.10400253571469875 WLCFIKLY 8 Unmodified _WLCFIKLY_ 0 0 0 Cheshire_dup79|chr2:28767095-28767877:-|3.555578294838388|0.0976153064833124|5.19|151.0|44|2|anti-sense Cheshire_dup79|chr2:28767095-28767877:-|3.555578294838388|0.0976153064833124|5.19|151.0|44|2|anti-sense Cheshire_dup79|chr2:28767095-28767877:-|3.555578294838388|0.0976153064833124|5.19|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_3 7 543.2977905273438 2 543.296256 1084.57796 NaN NaN NaN NaN NaN NaN NaN 33.903 1 37.583 37.083 38.083 3.6797 0 0 0 0.40738 1 5329 5329 0.79363 0 1 54085 562 33765 33783 62349 62349 0.03905366961589607 WLCLCLAL 8 Unmodified _WLCLCLAL_ 0 0 0 L1PA4_dup3915|chr5:78939283-78945425:-|2.526079700735338|0.0638439152789321|5.31|151.0|213|1|anti-sense;L1PA3_dup3800|chr5:137968596-137974622:+|11.612029046039156|0.2643911469566788|5.46|151.0|255|2|anti-sense;L1PA3_dup907|chr2:43542870-43549021:-|1.4294159381617264|0.1767631293468163|3.02|151.0|336|3|anti-sense;L1HS_dup800|chr7:91173444-91179517:+|1.0428347067153572|0.069461906138694|3.91|151.0|257|2|anti-sense;L1PA4_dup1094|chr2:73460455-73466651:+|2.109494115270322|0.363682883446258|2.54|151.0|325|3|anti-sense;L1PA3_dup9578|chr15:44359621-44364207:+|6.461873592304851|0.2581917439977259|4.65|151.0|264|3|anti-sense;L1PA3_dup851|chr2:23906606-23909144:+|2.420782149246139|0.0180454847558564|7.07|151.0|100|1|anti-sense;L1PA3_dup712|chr1:235381814-235387760:-|1.186035218532583|0.039517946240108|4.91|151.0|194|1|anti-sense;L1PA3_dup6398|chrX:56581520-56587672:-|1.1091814654747163|0.2302608634688935|2.27|150.0|212|1|anti-sense;L1PA3_dup6012|chr9:96797006-96803185:+|2.7555651840781583|0.2172485423611523|3.66|151.0|324|3|anti-sense;L1PA3_dup5882|chr9:40915782-40921920:+|1.000763049886292|0.0608316056650071|4.04|149.0|261|2|anti-sense;L1PA3_dup5686|chr9:139649-145712:+|2.487737939695242|0.4201646721703037|2.57|150.0|199|1|anti-sense;L1PA3_dup5053|chr7:140763510-140766450:+|2.326352710928896|0.0610168709029324|5.25|151.0|116|1|anti-sense;L1PA3_dup3964|chr6:4831173-4836230:-|2.680445875075561|0.0548274713041951|5.61|151.0|251|3|anti-sense;L1PA3_dup3473|chr5:70955953-70958810:-|3.084874909169926|0.491035729474781|2.65|149.0|134|2|anti-sense;L1PA4_dup3243|chr4:129023548-129029691:+|3.2483159958114696|0.3205029861259785|3.34|151.0|320|3|anti-sense;L1PA3_dup2820|chr4:106213355-106219380:+|1.0498892170021834|0.1664069450626405|2.66|151.0|246|2|anti-sense;L1PA3_dup225|chr1:84228931-84234940:-|3.222435310730038|0.4644621555680597|2.79|151.0|191|1|anti-sense;L1PA3_dup1748|chr3:48841976-48843410:-|1.4397907671017407|0.040943540942847|5.14|151.0|82|3|anti-sense;L1PA3_dup110|chr1:50760096-50762948:+|1.7556621995711454|0.0431278671305638|5.35|151.0|131|2|anti-sense;L1PA2_dup4081|chr13:40828820-40834834:+|1.249905904261159|0.2328733319459985|2.42|151.0|200|1|anti-sense;L1PA2_dup4080|chr13:40734920-40740945:+|2.455550946850213|0.4218342811535676|2.54|151.0|266|2|anti-sense;L1PA2_dup3944|chr12:46420945-46427078:-|1.0782552409441677|0.11122139025678|3.28|151.0|330|3|anti-sense;L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|198|1|anti-sense;L1PA2_dup2969|chrX:50060144-50066175:+|1.068982143843286|0.1496462982239436|2.84|151.0|241|2|anti-sense;L1PA2_dup215|chr1:174377792-174383815:-|1.893230001147713|0.1765379000415642|3.42|151.0|194|1|anti-sense;L1PA2_dup200|chr1:169251562-169257591:-|1.8958925897494048|0.0595535827587582|4.99|151.0|307|3|anti-sense;L1P1_dup3077|chr20:3497914-3500000:+|1.1992421277579874|0.0813761477265906|3.88|151.0|126|3|anti-sense;L1PA3_dup258|chr1:94506994-94512223:-|1.3044041384065448|0.4624865510661713|1.5|150.0|233|2|anti-sense L1PA4_dup3915|chr5:78939283-78945425:-|2.526079700735338|0.0638439152789321|5.31|151.0|213|1|anti-sense L1PA4_dup3915|chr5:78939283-78945425:-|2.526079700735338|0.0638439152789321|5.31|151.0|213|1|anti-sense MSMS UPN46_class_I_Rep_3 1 467.7489929199219 2 467.748085 933.481616 NaN NaN NaN NaN NaN NaN NaN 66.533 1 66.533 66.033 67.033 0 0 0 0 0.39167 1 15101 15101 11.114 0 1 54086 8482 33766 33784 62350 62350 0.012214761299674137 WLCLLNNR 8 Unmodified _WLCLLNNR_ 0 0 0 REV__MER4B-int_dup436|chr7:32520140-32520818:+|1.5855639745730807|0.0275289434039596|5.85|151.0|31|1|anti-sense REV__MER4B-int_dup436|chr7:32520140-32520818:+|1.5855639745730807|0.0275289434039596|5.85|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 516.237548828125 2 516.276386 1030.53822 NaN NaN NaN NaN NaN NaN NaN 21.823 1 25.538 25.038 26.038 3.7144 0 0 0 0.40738 1 2122 2122 0.79363 0 1 + 54087 31356 33767 33785 62351 62351 0.024172400108682268 WLCRLSWS 8 Unmodified _WLCRLSWS_ 0 0 0 AluY_dup85308|chr16:30248727-30249033:-|1.8289817343298456|0.1078724670947315|4.08|151.0|20|3|anti-sense;AluY_dup85221|chr16:29508744-29509050:-|1.330769081962782|0.308297459202398|2.11|148.0|20|3|anti-sense;AluY_dup84957|chr16:22510343-22510649:+|1.6577929139818992|0.0724966572448161|4.52|151.0|20|3|anti-sense;AluSx1_dup48997|chr8:37879026-37879334:+|1.1222128133406146|0.0211820028582797|5.73|150.0|11|1|anti-sense AluY_dup85308|chr16:30248727-30249033:-|1.8289817343298456|0.1078724670947315|4.08|151.0|20|3|anti-sense AluY_dup85308|chr16:30248727-30249033:-|1.8289817343298456|0.1078724670947315|4.08|151.0|20|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.3203125 2 525.763112 1049.51167 -0.24964 -0.00013125 1.4749 0.00077542 1.2252 0.00064417 525.7636716977364 31.864 0.38475 35.164 35.026 35.411 3.2991 44 28 2 0 0 0 0.82752 1 5543 5543 0.69038 0 1 71513 54088 320 33768 33786 62352 62352 -0.011104488804676294 WLCVCYWC 8 Unmodified _WLCVCYWC_ 0 0 0 L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|233|3|anti-sense;L1PA5_dup1409|chr2:181032785-181034691:+|1.920498812902583|0.1532859071818791|3.65|151.0|76|1|anti-sense L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|233|3|anti-sense L1PA5_dup8430|chr11:95806257-95810906:+|4.328643730058242|0.2800461753353084|3.95|151.0|233|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 538.1621704101562 2 538.213552 1074.41255 0.28102 0.00015125 1.6758 0.00090192 1.9568 0.0010532 538.2143024106203 54.095 0.25361 54.095 53.921 54.175 0 35 26 2 0 0 0 0.72333 1 11696 11696 2.8892 0.31174 1 126810 54089 14427 33769 33787 62353 62353 -0.12167931161229717 WLCVMTLF 8 Unmodified _WLCVMTLF_ 0 0 0 HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|25|1|sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|25|1|sense HERVL-int_dup1752|chr11:60218618-60223498:+|11.470607563830146|0.2921490029495608|5.3|151.0|25|1|sense MSMS UPN46_class_I_Rep_3 1 506.7530212402344 2 506.753367 1011.49218 NaN NaN NaN NaN NaN NaN NaN 84.871 1 84.871 84.371 85.371 0 0 0 0 0.39624 1 20217 20217 9.3474 0 1 54090 8348 33770 33788 62354 62354 -0.013105412155823615 WLCYPYLH 8 Unmodified _WLCYPYLH_ 0 0 0 REV__MER58A_dup7564|chrX:74274884-74275070:+|2.763685082211985|0.4973850231155973|2.47|151.0|1|1|sense REV__MER58A_dup7564|chrX:74274884-74275070:+|2.763685082211985|0.4973850231155973|2.47|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 547.3038330078125 2 547.760038 1093.50552 NaN NaN NaN NaN NaN NaN NaN 22.473 1 26.116 25.616 26.616 3.6432 0 0 0 0.40738 1 2302 2302 0.79363 0 1 + 54091 31463 33771 33789 62355 62355 -0.03748967111982893 WLDLRPWFT 9 Unmodified _WLDLRPWFT_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|65|1|sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|65|1|sense MSMS UPN48_class_I_Rep_3 7 617.3250122070312 2 617.324391 1232.63423 NaN NaN NaN NaN NaN NaN NaN 54.232 1 57.801 57.301 58.301 3.5694 0 0 0 0.4007 1 11381 11381 0.52476 0 1 + 54092 23582 33772 33790 62356 62356 0.02721711122603665 WLEALVLH 8 Unmodified _WLEALVLH_ 0 0 0 MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 490.78204345703125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.36 1 111.36 110.86 111.86 0 0 0 0 0.40738 1 27454 27454 0.79363 0 1 54093 16384 33773 33791 62357 62357 0.05850965656793505 WLEALVLH 8 Unmodified _WLEALVLH_ 0 0 0 MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 490.78131103515625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 55.467 1 58.946 58.446 59.446 3.4785 0 0 0 0.40738 1 12592 12592 0.79363 0 1 54094 16384 33773 33791 62358 62358 0.05850965656793505 WLEALVLH 8 Unmodified _WLEALVLH_ 0 0 0 MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN47_class_I_Rep_1 2 490.7828674316406 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.25 1 114.82 114.32 115.32 3.572 0 0 0 0.40604 1 27434 27434 2.5775 0 1 54095 16384 33773 33791 62359 62359 0.05850965656793505 WLEALVLH 8 Unmodified _WLEALVLH_ 0 0 0 MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN47_class_I_Rep_2 3 490.781005859375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.14 1 116.65 116.15 117.15 3.5171 0 0 0 0.40746 1 27506 27506 0.69038 0 1 54096 16384 33773 33791 62360 62360 0.05850965656793505 WLEALVLH 8 Unmodified _WLEALVLH_ 0 0 0 MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 490.7820129394531 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.2 1 115.86 115.36 116.36 3.6666 0 0 0 0.40604 1 26717 26717 2.5775 0 1 54097 16384 33773 33791 62361 62361 0.05850965656793505 WLEALVLH 8 Unmodified _WLEALVLH_ 0 0 0 MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MLT1F_dup991|chr3:185807582-185807995:+|1.1476593071100831|0.0048343146260888|7.89|148.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 490.78131103515625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 114.63 1 118.29 117.79 118.79 3.6616 0 0 0 0.40738 1 27406 27406 0.79363 0 1 54098 16384 33773 33791 62362 62362 0.05850965656793505 WLEKNLPTL 9 Unmodified _WLEKNLPTL_ 0 0 0 ENST00000513084.5_1_5:96245508-96253306:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2 ENST00000513084.5_1_5:96245508-96253306:+|nuORF ENST00000513084.5_1_5:96245508-96253306:+|nuORF MSMS UPN48_class_I_Rep_1 5 557.3173217773438 2 557.318774 1112.623 NaN NaN NaN NaN NaN NaN NaN 73.931 1 77.412 76.912 77.912 3.4812 0 0 0 0.38639 1 17449 17449 3.9444 0 1 54099 4104 33774 33792 62363 62363 0.07118889028470221 WLELNVQFA 9 Unmodified _WLELNVQFA_ 0 0 0 REV__L1M1_dup1413|chr3:23314430-23317469:-|2.60036733919628|0.0524239478809924|5.63|151.0|120|1|anti-sense REV__L1M1_dup1413|chr3:23314430-23317469:-|2.60036733919628|0.0524239478809924|5.63|151.0|120|1|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2926025390625 2 560.295299 1118.57605 NaN NaN NaN NaN NaN NaN NaN 42.014 1 45.375 44.875 45.875 3.3611 0 0 0 0.38073 1 8525 8525 5.2969 0.39987 1 + 54100 24010 33775 33793 62364 62364 0.02150029477343196 WLFAREHP 8 Unmodified _WLFAREHP_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|1|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|4|intron;ENSG00000111252.11,SH2B3,chr12,+,I2.1,111418878,111434861|72|12.88|1|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|2|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|5|intron;ENSG00000111252.11,SH2B3,chr12,+,I2.1,111418878,111434861|72|12.88|2|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|8|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|9|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|10|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|12|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|7|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|11|intron;ENSG00000111252.11,SH2B3,chr12,+,I1.1,111406278,111418118|48|8.79|3|intron ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 MSMS UPN48_class_I_Rep_2 6 527.8106689453125 2 528.274701 1054.53485 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.31 118.81 119.81 3.6607 0 0 0 0.40738 1 27688 27688 0.79363 0 1 54101 1965 33776 33794 62365 62365 0.00976313228534309 WLFAWFQIVG 10 Unmodified _WLFAWFQIVG_ 0 0 0 REV__L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|56|1|anti-sense REV__L1MA7_dup3226|chr6:144609111-144610594:+|1.8993987521085869|0.0594770338480097|5.0|151.0|56|1|anti-sense MSMS UPN46_class_I_Rep_3 1 633.8370971679688 2 633.837134 1265.65972 NaN NaN NaN NaN NaN NaN NaN 46.962 1 46.962 46.462 47.462 0 0 0 0 0.53105 1 9670 9670 1.8442 0.36234 1 + 54102 25507 33777 33795 62366 62366 0.037511856450237246 WLFCRFFV 8 Unmodified _WLFCRFFV_ 0 0 0 L1M1_dup3202|chr5:150882247-150884210:+|1.329510797471431|0.1358026776885155|3.29|151.0|138|3|anti-sense L1M1_dup3202|chr5:150882247-150884210:+|1.329510797471431|0.1358026776885155|3.29|151.0|138|3|anti-sense L1M1_dup3202|chr5:150882247-150884210:+|1.329510797471431|0.1358026776885155|3.29|151.0|138|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 558.75146484375 2 559.286223 1116.55789 -0.17692 -9.8952E-05 1.0108 0.00056531 0.83384 0.00046636 559.2872762290527 30.665 0.075977 33.977 33.948 34.024 3.3116 6 4 2 0 0 0 0.72333 1 5120 5120 0.79363 0 1 13871 54103 8546 33778 33796 62367 62367 0.004276160216249991 WLFCRLFL 8 Unmodified _WLFCRLFL_ 0 0 0 L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|74|1|anti-sense L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|74|1|anti-sense L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 549.3031005859375 2 549.301873 1096.58919 0.41514 0.00022804 1.2393 0.00068074 1.6544 0.00090877 549.3028875024465 73.626 0.034584 77.012 77 77.034 3.3861 5 3 2 0 0 0 0.82752 1 18087 18087 5.2307 0 1 46664 54104 10095 33779 33797 62368 62368 0.044761890557310835 WLFCRLFL 8 Unmodified _WLFCRLFL_ 0 0 0 L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|74|1|anti-sense L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|74|1|anti-sense L1MA9_dup11665|chr11:94611934-94613775:-|4.334229666675568|0.2594309408729212|4.06|151.0|74|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 549.301873 1096.58919 0.41514 0.00022804 1.2393 0.00068074 1.6544 0.00090877 549.3028875024465 73.626 0.034584 77.012 77 77.034 3.3861 0 0 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 46664 54105 10095 33779 33797 0.044761890557310835 WLFGGKVGV 9 Unmodified _WLFGGKVGV_ 0 0 0 REV__nc|ENSG00000106069|P52757-5|CHN2 REV__nc|ENSG00000106069|P52757-5|CHN2 MSMS UPN46_class_I_Rep_3 1 481.7772216796875 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 18.772 1 18.772 18.272 19.272 0 0 0 0 0.4029 1 1691 1691 0 0 1 + 54106 31954 33780 33798 62369 62369 0.05622983002399451 WLFHGIRP 8 Unmodified _WLFHGIRP_ 0 0 0 REV__L1MDb_dup212|chr3:60667205-60668378:-|1.2623599977953783|0.0958916498924188|3.72|150.0|80|3|anti-sense REV__L1MDb_dup212|chr3:60667205-60668378:-|1.2623599977953783|0.0958916498924188|3.72|150.0|80|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 512.8212890625 2 513.287611 1024.56067 0.26429 0.00013566 -1.7032 -0.00087424 -1.4389 -0.00073858 513.2867040688542 65.311 0.055862 68.49 68.447 68.503 3.1795 5 4 2 0 0 0 0.72333 1 15676 15676 0.79363 0 1 36305 + 54107 27554 33781 33799 62370 62370 0.049372074707889624 WLFILLEG 8 Unmodified _WLFILLEG_ 0 0 0 ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|44|3|sense ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|44|3|sense ERVL-B4-int_dup1810|chr8:23036852-23038768:+|1.9468880002327316|0.2094981294249729|3.22|151.0|44|3|sense MSMS UPN47_class_I_Rep_3 4 495.7965393066406 2 495.786579 989.558604 NaN NaN NaN NaN NaN NaN NaN 73.479 1 76.715 76.215 77.215 3.2363 0 0 0 0.40738 1 18148 18148 0.79363 0 1 54108 7720 33782 33800 62371 62371 0.06340733942352017 WLFKHRRA 8 Unmodified _WLFKHRRA_ 0 0 0 nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 MSMS UPN48_class_I_Rep_1 5 557.326416015625 2 557.32506 1112.63557 NaN NaN NaN NaN NaN NaN NaN 111.81 1 115.45 114.95 115.95 3.6326 0 0 0 0.40746 1 27129 27129 0.69038 0 1 54109 5447 33783 33801 62372 62372 0.0837539000203833 WLFLCLYWYF 10 Unmodified _WLFLCLYWYF_ 0 0 0 REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|97|2|anti-sense REV__L1MA3_dup1512|chr3:81523354-81524970:-|1.024564739284633|0.3539014911964313|1.53|151.0|97|2|anti-sense MSMS UPN47_class_I_Rep_3 4 485.2367858886719 3 485.238627 1452.69405 NaN NaN NaN NaN NaN NaN NaN 34.307 1 37.582 37.082 38.082 3.2748 0 0 0 0.53105 1 6223 6223 7.1017 0.47827 1 + 54110 24976 33784 33802 62373 62373 -0.014187342583909412 WLFLVSPL 8 Unmodified _WLFLVSPL_ 0 0 0 REV__Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|93|2|anti-sense REV__Tigger2_dup1347|chr7:117047872-117049923:-|1.3408678446482176|0.0280664588944959|5.58|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_3 7 487.7908630371094 2 487.789121 973.56369 NaN NaN NaN NaN NaN NaN NaN 76.475 1 80.058 79.558 80.558 3.5831 0 0 0 0.40625 1 18014 18014 2.3027 0 1 + 54111 32633 33785 33803 62374 62374 0.0758503780494948 WLFSHDPLL 9 Unmodified _WLFSHDPLL_ 0 0 0 REV__L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|312|2|anti-sense REV__L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|312|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.2958374023438 2 564.297842 1126.58113 NaN NaN NaN NaN NaN NaN NaN 36.573 1 40.275 39.775 40.775 3.7021 0 0 0 0.39428 1 6158 6158 2.0598 0.40713 1 + 54112 29727 33786 33804 62375 62375 0.022903333399654002 WLFTKKQY 8 Unmodified _WLFTKKQY_ 0 0 0 REV__L1PA15_dup2884|chr5:172256980-172259141:-|2.20753430641173|0.061727710779118|5.16|151.0|16|1|sense REV__L1PA15_dup2884|chr5:172256980-172259141:-|2.20753430641173|0.061727710779118|5.16|151.0|16|1|sense MSMS UPN48_class_I_Rep_1 5 557.308349609375 2 557.30821 1112.60187 NaN NaN NaN NaN NaN NaN NaN 112.43 1 116.07 115.57 116.57 3.6321 0 0 0 0.40746 1 27286 27286 0.69038 0 1 + 54113 29235 33787 33805 62376 62376 0.050069237196112226 WLFVCPWMRRK 11 Unmodified _WLFVCPWMRRK_ 0 0 0 ENSG00000168575|ENST00000520262|SLC20A2 ENSG00000168575|ENST00000520262|SLC20A2 ENSG00000168575|ENST00000520262|SLC20A2 MULTI-SECPEP UPN46_class_I_Rep_3 1 508.3583984375 3 507.937177 1520.7897 0.2434 0.00012363 -2.746 -0.0013948 -2.5026 -0.0012711 508.26963835563646 53.816 0.059296 53.816 53.785 53.845 0 5 4 2 0 0 0 22.551 1 11612 11612 0.45452 0.087843 1 68682 54114 4381 33788 33806 62377 62377 0.05013715380846406 WLFVLLFRG 9 Unmodified _WLFVLLFRG_ 0 0 0 REV__L1ME3_dup2180|chr4:1219352-1219708:+|1.6672883363726363|0.4706105502278617|1.82|151.0|27|3|anti-sense REV__L1ME3_dup2180|chr4:1219352-1219708:+|1.6672883363726363|0.4706105502278617|1.82|151.0|27|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 576.3607788085938 2 575.84222 1149.66989 0.4771 0.00027474 0.84833 0.0004885 1.3254 0.00076324 575.8426238671228 83.775 0.27311 87.456 87.29 87.563 3.6814 52 27 2 0 0 0 0.50088 1 19882 19882 0.52476 0 1 330920 + 54115 27944 33789 33807 62378 62378 0.10103793370262792 WLFVLLFRG 9 Unmodified _WLFVLLFRG_ 0 0 0 REV__L1ME3_dup2180|chr4:1219352-1219708:+|1.6672883363726363|0.4706105502278617|1.82|151.0|27|3|anti-sense REV__L1ME3_dup2180|chr4:1219352-1219708:+|1.6672883363726363|0.4706105502278617|1.82|151.0|27|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 576.3607788085938 2 575.84222 1149.66989 0.4771 0.00027474 0.84833 0.0004885 1.3254 0.00076324 575.8426238671228 83.775 0.27311 87.456 87.29 87.563 3.6814 52 27 2 0 0 0 0.12532 1 19882 19882 0.52476 0.52476 1 330920 + 54116 27944 33789 33807 62379 62379 0.10103793370262792 WLGHENRLN 9 Unmodified _WLGHENRLN_ 0 0 0 AluSz6_dup14369|chr5:137922456-137922754:+|1.0168378985134767|0.0384371563062198|4.73|151.0|7|2|sense AluSz6_dup14369|chr5:137922456-137922754:+|1.0168378985134767|0.0384371563062198|4.73|151.0|7|2|sense AluSz6_dup14369|chr5:137922456-137922754:+|1.0168378985134767|0.0384371563062198|4.73|151.0|7|2|sense MSMS UPN48_class_I_Rep_3 7 569.791015625 2 569.791247 1137.56794 NaN NaN NaN NaN NaN NaN NaN 32.191 1 35.893 35.393 36.393 3.7015 0 0 0 0.40038 1 4861 4861 0.6015 0 1 54117 379 33790 33808 62380 62380 0.004658952805812078 WLGHFVPL 8 Unmodified _WLGHFVPL_ 0 0 0 REV__MLT1D_dup18525|chr18:36783759-36784231:+|1.5066376676753572|0.3020447553697901|2.32|150.0|21|1|anti-sense REV__MLT1D_dup18525|chr18:36783759-36784231:+|1.5066376676753572|0.3020447553697901|2.32|150.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 484.82513427734375 2 484.771263 967.527973 NaN NaN NaN NaN NaN NaN NaN 21.616 1 25.29 24.79 25.79 3.6749 0 0 0 0.40738 1 2373 2373 0.79363 0 1 + 54118 31675 33791 33809 62381 62381 0.04291000347939189 WLGKLLKI 8 Unmodified _WLGKLLKI_ 0 0 0 REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant REV__DNAH11|p.L3252Ffs*6|1|0.07|ENSG00000105877|chr7:21787408-21787409|-/T|frameshift_variant MSMS UPN47_class_I_Rep_1 2 485.8241271972656 2 485.826038 969.637523 NaN NaN NaN NaN NaN NaN NaN 113.1 1 116.67 116.17 117.17 3.572 0 0 0 0.40746 1 27896 27896 0.69038 0 1 + 54119 17503 33792 33810 62382 62382 0.15149005967271023 WLGLVHMLLL 10 Unmodified _WLGLVHMLLL_ 0 0 0 L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|339|3|anti-sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|339|3|anti-sense L1M1_dup4154|chr7:156737907-156743076:+|1.129882221077275|0.0433885314890892|4.7|151.0|339|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 597.8565063476562 2 597.857012 1193.69947 0.48828 0.00029192 -0.66146 -0.00039546 -0.17319 -0.00010354 598.3583623650973 85.688 1.3356 89.06 88.741 90.076 3.3716 281 165 2 0 0 0 0.56281 1 21487 21487 1.8442 0.51471 1 409170 54120 8563 33793 33811 62383 62383 0.11036989324111346 WLGSIEPEAL 10 Unmodified _WLGSIEPEAL_ 0 0 0 REV__ENST00000270720.11_1_1:1887019-1905630:-|nuORF REV__ENST00000270720.11_1_1:1887019-1905630:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.7926025390625 2 557.792589 1113.57063 0.51647 0.00028808 0.052863 2.9486E-05 0.56933 0.00031757 557.7923580744015 53.017 0.64272 56.344 56.106 56.749 3.3266 47 36 2 0 0 0 0.56033 1 11942 11942 3.5965 0 1 71903 + 54121 19410 33794 33812 62384 62384 0.018383058948302278 WLGVKRQPL 9 Unmodified _WLGVKRQPL_ 0 0 0 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 ENSG00000144452|ENST00000272895|ABCA12 MULTI-MSMS UPN46_class_I_Rep_3 1 549.3365478515625 2 548.834926 1095.6553 0.03461 1.8995E-05 -0.28296 -0.0001553 -0.24835 -0.0001363 548.8344023411502 25.502 0.066914 25.502 25.466 25.533 0 8 4 2 0 0 0 0.48643 1 3510 3510 2.0598 0 1 61104 54122 3354 33795 33813 62385 62385 0.11129721222141598 WLHDHLKLD 9 Unmodified _WLHDHLKLD_ 0 0 0 MER51-int_dup224|chrX:131727168-131728062:+|1.1755946003067026|0.0050674437274567|7.86|149.0|53|3|anti-sense MER51-int_dup224|chrX:131727168-131728062:+|1.1755946003067026|0.0050674437274567|7.86|149.0|53|3|anti-sense MER51-int_dup224|chrX:131727168-131728062:+|1.1755946003067026|0.0050674437274567|7.86|149.0|53|3|anti-sense MSMS UPN47_class_I_Rep_2 3 588.8119506835938 2 588.811648 1175.60874 NaN NaN NaN NaN NaN NaN NaN 76.798 1 80.129 79.629 80.629 3.3315 0 0 0 0.39518 1 19022 19022 1.8442 0 1 54123 16073 33796 33814 62386 62386 0.02796236600170232 WLHKARRP 8 Unmodified _WLHKARRP_ 0 0 0 nc|ENSG00000259642|Q8NBB2|ST20-AS1 nc|ENSG00000259642|Q8NBB2|ST20-AS1 nc|ENSG00000259642|Q8NBB2|ST20-AS1 MSMS UPN46_class_I_Rep_3 1 532.3165283203125 2 532.317235 1062.61992 NaN NaN NaN NaN NaN NaN NaN 32.275 1 32.275 31.775 32.775 0 0 0 0 0.40746 1 5500 5500 0.69038 0 1 54124 16845 33797 33815 62387 62387 0.09111103484974592 WLHKCILLKR 10 Unmodified _WLHKCILLKR_ 0 0 0 L1PA5_dup6151|chr9:21895880-21899384:+|3.485998891491966|0.1302104098113766|4.74|151.0|143|2|anti-sense L1PA5_dup6151|chr9:21895880-21899384:+|3.485998891491966|0.1302104098113766|4.74|151.0|143|2|anti-sense L1PA5_dup6151|chr9:21895880-21899384:+|3.485998891491966|0.1302104098113766|4.74|151.0|143|2|anti-sense MSMS UPN47_class_I_Rep_2 3 437.2681884765625 3 437.269032 1308.78527 NaN NaN NaN NaN NaN NaN NaN 51.161 1 54.5 54 55 3.3386 0 0 0 0.53105 1 11309 11309 0.77653 0 1 54125 14504 33798 33816 62388 62388 0.14322574229595375 WLHLFLGI 8 Unmodified _WLHLFLGI_ 0 0 0 L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|180|3|anti-sense L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|180|3|anti-sense L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|180|3|anti-sense MSMS UPN48_class_I_Rep_1 5 499.7942199707031 2 499.794738 997.574923 NaN NaN NaN NaN NaN NaN NaN 90.776 1 94.402 93.902 94.902 3.626 0 0 0 0.40738 1 21816 21816 0.79363 0 1 54126 9956 33799 33817 62389 62389 0.07603859899074905 WLHLHLWQ 8 Unmodified _WLHLHLWQ_ 0 0 0 REV__ENST00000300853.7_1_19:45912063-45912522:-|nuORF REV__ENST00000300853.7_1_19:45912063-45912522:-|nuORF MSMS UPN46_class_I_Rep_3 1 566.7979125976562 2 566.806168 1131.59778 NaN NaN NaN NaN NaN NaN NaN 67.291 1 67.291 66.791 67.791 0 0 0 0 0.40738 1 15311 15311 0.79363 0.10326 1 + 54127 21670 33800 33818 62390 62390 0.037248790165449464 WLHLWLPP 8 Unmodified _WLHLWLPP_ 0 0 0 MER45C_dup579|chr7:140004655-140005148:-|1.5136158055940852|0.0141042207877239|6.75|151.0|8|3|sense MER45C_dup579|chr7:140004655-140005148:-|1.5136158055940852|0.0141042207877239|6.75|151.0|8|3|sense MER45C_dup579|chr7:140004655-140005148:-|1.5136158055940852|0.0141042207877239|6.75|151.0|8|3|sense MSMS UPN46_class_I_Rep_3 1 530.9853515625 2 531.300188 1060.58582 NaN NaN NaN NaN NaN NaN NaN 101.13 1 101.13 100.63 101.63 0 0 0 0 0.40738 1 24672 24672 0.79363 0 1 54128 15996 33801 33819 62391 62391 0.05795262273363733 WLHNGFVF 8 Unmodified _WLHNGFVF_ 0 0 0 REV__L1ME1_dup9593|chr5:57184698-57185258:-|1.0231462278542556|0.0124035745524502|6.37|151.0|43|3|anti-sense REV__L1ME1_dup9593|chr5:57184698-57185258:-|1.0231462278542556|0.0124035745524502|6.37|151.0|43|3|anti-sense MSMS UPN46_class_I_Rep_3 1 510.2671203613281 2 510.25852 1018.50249 NaN NaN NaN NaN NaN NaN NaN 32.637 1 32.637 32.137 33.137 0 0 0 0 0.38221 1 5610 5610 14.582 2.9414 1 + 54129 27810 33802 33820 62392 62392 -0.006024741744795392 WLHQKHAL 8 Unmodified _WLHQKHAL_ 0 0 0 REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|14|1|sense REV__L1M1_dup775|chr2:31827210-31829996:-|1.45169187094093|0.0636086896881935|4.51|151.0|14|1|sense MSMS UPN48_class_I_Rep_2 6 516.7916870117188 2 516.790518 1031.56648 NaN NaN NaN NaN NaN NaN NaN 44.48 1 48.242 47.742 48.742 3.7617 0 0 0 0.40738 1 8481 8481 0.79363 0 1 + 54130 24139 33803 33821 62393 62393 0.051963059824629454 WLIFFLHY 8 Unmodified _WLIFFLHY_ 0 0 0 HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|12|1|sense;HERV9-int_dup117|chr7:37202715-37204174:-|4.163171206754798|0.065795383563829|5.98|151.0|30|2|sense HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|12|1|sense HERV9-int_dup116|chr7:36501359-36504207:-|4.36596296909095|0.049401848828783|6.47|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 569.8085327148438 2 569.807845 1137.60114 0.50956 0.00029035 0.90998 0.00051851 1.4195 0.00080886 569.8084329704135 28.203 0.5633 31.834 31.626 32.189 3.6311 75 59 2 0 0 0 0.82752 1 3938 3938 0.79363 0 1 109890 54131 8064 33804 33822 62394 62394 0.03784129070572817 WLIHILYM 8 Unmodified _WLIHILYM_ 0 0 0 Tigger2_dup1932|chr11:43474642-43475076:-|1.2361558766242269|0.0403580762121033|4.94|151.0|20|1|anti-sense Tigger2_dup1932|chr11:43474642-43475076:-|1.2361558766242269|0.0403580762121033|4.94|151.0|20|1|anti-sense Tigger2_dup1932|chr11:43474642-43475076:-|1.2361558766242269|0.0403580762121033|4.94|151.0|20|1|anti-sense MSMS UPN47_class_I_Rep_2 3 544.8023071289062 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 18.507 1 21.897 21.397 22.397 3.3898 0 0 0 0.40738 1 1577 1577 0.79363 0 1 54132 33290 33805 33823 62395 62395 0.048567693358791075 WLIKFKNV 8 Unmodified _WLIKFKNV_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MSMS UPN47_class_I_Rep_1 2 524.7894897460938 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 114.49 1 118.07 117.57 118.57 3.5809 0 0 0 0.40746 1 28293 28293 0.69038 0 1 54133 3958 33806 33824 62396 62396 0.10623817961868554 WLIKRKLLKKK 11 Unmodified _WLIKRKLLKKK_ 0 0 0 L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|10|2|sense MSMS UPN48_class_I_Rep_1 5 485.3411865234375 3 485.341296 1453.00206 NaN NaN NaN NaN NaN NaN NaN 78.556 1 82.091 81.591 82.591 3.5352 0 0 0 0.38417 1 18733 18733 0 0 1 54134 13049 33807 33825 62397 62397 0.2936787305479811 WLILERRNR 9 Unmodified _WLILERRNR_ 0 0 0 REV__L1MD1_dup3865|chrX:44893733-44894610:-|2.310517650684977|0.0133615686772497|7.43|151.0|16|2|sense REV__L1MD1_dup3865|chrX:44893733-44894610:-|2.310517650684977|0.0133615686772497|7.43|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 628.3743286132812 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 31.573 1 31.573 31.073 32.073 0 0 0 0 0.4007 1 5293 5293 0.52476 0 1 + 54135 27329 33808 33826 62398 62398 0.11374698402391914 WLIMQKLFV 9 Unmodified _WLIMQKLFV_ 0 0 0 REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF MSMS UPN46_class_I_Rep_3 1 589.3433837890625 2 589.343738 1176.67292 NaN NaN NaN NaN NaN NaN NaN 90.656 1 90.656 90.156 91.156 0 0 0 0 0.39428 1 21865 21865 2.0598 0.40713 1 + 54136 23069 33809 33827 62399 62399 0.0916530043275543 WLINRQRIK 9 Unmodified _WLINRQRIK_ 0 0 0 REV__MER4D_dup125|chr2:62073121-62073697:+|1.1608230167650069|0.0080980609447586|7.16|151.0|47|3|anti-sense REV__MER4D_dup125|chr2:62073121-62073697:+|1.1608230167650069|0.0080980609447586|7.16|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_3 7 613.8790283203125 2 613.877656 1225.74076 NaN NaN NaN NaN NaN NaN NaN 45.527 1 49.164 48.664 49.664 3.6369 0 0 0 0.40038 1 8727 8727 0.6015 0 1 + 54137 31361 33810 33828 62400 62400 0.13691886407787024 WLIPHLQL 8 Unmodified _WLIPHLQL_ 0 0 0 ENST00000374810.7_1_20:33298341-33298617:+|nuORF ENST00000374810.7_1_20:33298341-33298617:+|nuORF ENST00000374810.7_1_20:33298341-33298617:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 510.7720947265625 2 510.30547 1018.59639 0.17339 8.8484E-05 -0.59406 -0.00030315 -0.42067 -0.00021467 510.3049268896936 77.96 0.11957 81.303 81.252 81.371 3.3428 16 10 2 0 0 0 0.72333 1 19375 19375 2.5775 0 1 65882 54138 6433 33811 33829 62401 62401 0.08783244927803935 WLIPHLQL 8 Unmodified _WLIPHLQL_ 0 0 0 ENST00000374810.7_1_20:33298341-33298617:+|nuORF ENST00000374810.7_1_20:33298341-33298617:+|nuORF ENST00000374810.7_1_20:33298341-33298617:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 510.30547 1018.59639 0.25675 0.00013102 -0.56046 -0.00028601 -0.30371 -0.00015499 510.3051249925031 77.729 0.36755 81.158 81.124 81.492 3.4289 -0.089074 -3.099E-05 NaN 2.5775 46 36 2 NaN NaN NaN NaN 0 NaN NaN 0 118250 54139 6433 33811 33829 0.08783244927803935 WLIQPVSYL 9 Unmodified _WLIQPVSYL_ 0 0 0 REV__Tigger1_dup1731|chr2:174136975-174138710:-|1.191955505785291|0.0853400322853645|3.8|151.0|17|2|sense REV__Tigger1_dup1731|chr2:174136975-174138710:-|1.191955505785291|0.0853400322853645|3.8|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 559.815673828125 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 76.128 1 79.711 79.211 80.211 3.5831 0 0 0 0.37692 1 17920 17920 6.2058 0.9089 1 + 54140 32385 33812 33830 62402 62402 0.06307790516802925 WLIVFVLP 8 Unmodified _WLIVFVLP_ 0 0 0 L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|126|1|anti-sense L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|126|1|anti-sense L1PA15_dup7228|chr14:68069270-68072037:-|2.065809155809698|0.0301182877326385|6.1|151.0|126|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.8080749511719 2 493.807314 985.600075 NaN NaN NaN NaN NaN NaN NaN 71.94 1 75.159 74.659 75.659 3.2188 0 0 0 0.40581 1 17681 17681 2.8892 0 1 54141 13975 33813 33831 62403 62403 0.10669914701645666 WLIVVFLVE 9 Unmodified _WLIVVFLVE_ 0 0 0 AluSx_dup47375|chr7:143295029-143295326:-|1.294600355301106|0.1004354086986449|3.69|151.0|13|1|anti-sense;AluSx1_dup108384|chr19:48219689-48219977:+|1.2009379520151933|0.1007739652572201|3.57|151.0|17|3|anti-sense;AluSx4_dup3265|chr5:76864716-76865006:-|1.149232063320943|0.0024688956305171|8.86|149.0|13|1|anti-sense;ENSG00000171643.14,S100Z,chr5,+,I1.1,76850156,76870165|40|10.05|1|intron AluSx_dup47375|chr7:143295029-143295326:-|1.294600355301106|0.1004354086986449|3.69|151.0|13|1|anti-sense AluSx_dup47375|chr7:143295029-143295326:-|1.294600355301106|0.1004354086986449|3.69|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 559.3338623046875 2 559.336436 1116.65832 NaN NaN NaN NaN NaN NaN NaN 67.875 1 71.24 70.74 71.74 3.3646 0 0 0 0.39428 1 16350 16350 2.0598 0 1 54142 289 33814 33832 62404 62404 0.10465551556262653 WLKCQKKV 8 Unmodified _WLKCQKKV_ 0 0 0 L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|30|2|sense L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|30|2|sense L1MEg_dup2843|chr3:60972101-60973544:-|1.0063922232092073|0.0223460249377174|5.49|150.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 516.8062133789062 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 100.28 1 100.28 99.775 100.78 0 0 0 0 0.40746 1 24441 24441 0.69038 0 1 54143 13382 33815 33833 62405 62405 0.08047287567387684 WLKDWQLYSDL 11 Unmodified _WLKDWQLYSDL_ 0 0 0 LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|27|2|sense LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|27|2|sense LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|27|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.5818786621094 3 489.581998 1465.72417 0.23903 0.00011703 -0.1421 -6.957E-05 0.096931 4.7456E-05 489.5819465473012 61.073 0.33479 64.586 64.439 64.774 3.5128 40 28 2 0 0 0 0.6724 1 13461 13461 1.2148 0 1 138350 54144 15497 33816 33834 62406 62406 0.009932959405432484 WLKDWQLYSDL 11 Unmodified _WLKDWQLYSDL_ 0 0 0 LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|27|2|sense LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|27|2|sense LOR1-int_dup150|chr2:240516004-240517527:+|1.4662615980301683|0.0915357382614529|4.0|151.0|27|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 489.581998 1465.72417 0.23903 0.00011703 -0.1421 -6.957E-05 0.096931 4.7456E-05 489.5819465473012 61.073 0.33479 64.586 64.439 64.774 3.5128 -0.10788 0.00016767 NaN 1.2148 40 28 2 NaN NaN NaN NaN 0 NaN NaN 0 138350 54145 15497 33816 33834 0.009932959405432484 WLKHEATRGN 10 Unmodified _WLKHEATRGN_ 0 0 0 nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-3|SEL1L3 MULTI-MSMS UPN48_class_I_Rep_3 7 404.5474853515625 3 404.547511 1210.6207 0.0023123 9.3542E-07 0.12029 4.8661E-05 0.1226 4.9597E-05 404.5476588955205 35.708 0.060352 39.374 39.362 39.423 3.6667 8 5 2 0 0 0 0.56118 1 5832 5832 1.4551 0 1 51432 54146 1373 33817 33835 62407 62407 0.023818533433541234 WLKMRSVL 8 Unmodified _WLKMRSVL_ 0 0 0 ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1 ENSG00000186684|ENST00000664447|CYP27C1 ENSG00000186684|ENST00000664447|CYP27C1 MSMS UPN48_class_I_Rep_1 5 516.7308959960938 2 516.80478 1031.59501 NaN NaN NaN NaN NaN NaN NaN 94.026 1 97.647 97.147 98.147 3.6208 0 0 0 0.40746 1 22616 22616 0.69038 0 1 54147 5162 33818 33836 62408 62408 0.08047287567387684 WLKPIVPKL 9 Unmodified _WLKPIVPKL_ 0 0 0 REV__AluJr_dup73284|chr17:67933288-67933592:+|1.968163525467321|0.0446576127539541|5.46|151.0|1|1|sense REV__AluJr_dup73284|chr17:67933288-67933592:+|1.968163525467321|0.0446576127539541|5.46|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 547.3607788085938 2 547.360245 1092.70594 NaN NaN NaN NaN NaN NaN NaN 21.224 1 24.872 24.372 25.372 3.648 0 0 0 0.4029 1 1967 1967 0 0 1 + 54148 17055 33819 33837 62409 62409 0.16329250547141783 WLKPLAYH 8 Unmodified _WLKPLAYH_ 0 0 0 REV__ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|40|2|anti-sense REV__ERV3-16A3_I-int_dup1746|chr4:119475662-119476625:-|1.135137968796502|0.2121580058296543|2.42|151.0|40|2|anti-sense MSMS UPN47_class_I_Rep_2 3 514.2916259765625 2 514.28982 1026.56509 NaN NaN NaN NaN NaN NaN NaN 35.496 1 38.907 38.407 39.407 3.4114 0 0 0 0.40738 1 6551 6551 0.79363 0 1 + 54149 23243 33820 33838 62410 62410 0.05286671893713901 WLKQDHNIQ 9 Unmodified _WLKQDHNIQ_ 0 0 0 REV__ENSG00000140465|ENST00000379727|CYP1A1 REV__ENSG00000140465|ENST00000379727|CYP1A1 MSMS UPN47_class_I_Rep_1 2 591.3049926757812 2 591.306729 1180.59891 NaN NaN NaN NaN NaN NaN NaN 59.649 1 63.047 62.547 63.547 3.3982 0 0 0 0.38639 1 13867 13867 3.9444 0 1 + 54150 19342 33821 33839 62411 62411 0.015830485948072237 WLKRRIWRMP 10 Unmodified _WLKRRIWRMP_ 0 0 0 ENST00000577847.1_1_17:18087769-18087952:-|nuORF ENST00000577847.1_1_17:18087769-18087952:-|nuORF ENST00000577847.1_1_17:18087769-18087952:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 481.28399658203125 3 481.283564 1440.82886 0.11995 5.773E-05 0.32818 0.00015795 0.44813 0.00021568 481.2837588386428 106.18 0.49368 109.8 109.57 110.07 3.6277 155 66 3 0 0 0 0.56444 1 25610 25610 0.69767 0.24315 1 254470 54151 7537 33822 33840 62412 62412 0.1260818372675203 WLKRRIWRMP 10 Unmodified _WLKRRIWRMP_ 0 0 0 ENST00000577847.1_1_17:18087769-18087952:-|nuORF ENST00000577847.1_1_17:18087769-18087952:-|nuORF ENST00000577847.1_1_17:18087769-18087952:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 481.283564 1440.82886 0.23755 0.00011433 0.38043 0.0001831 0.61798 0.00029742 481.28380899443624 105.98 0.51836 109.67 109.47 109.98 3.6834 -0.07154 3.4397E-05 NaN 0.69767 112 73 2 NaN NaN NaN NaN 0 NaN NaN 0 351990 54152 7537 33822 33840 0.1260818372675203 WLKRRIWRMP 10 Unmodified _WLKRRIWRMP_ 0 0 0 ENST00000577847.1_1_17:18087769-18087952:-|nuORF ENST00000577847.1_1_17:18087769-18087952:-|nuORF ENST00000577847.1_1_17:18087769-18087952:-|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 481.283564 1440.82886 0.22376 0.00010769 0.36923 0.0001777 0.59299 0.0002854 481.2838850242223 106.04 0.54665 109.75 109.52 110.07 3.702 0.0067545 1.8222E-05 NaN 0.69767 146 80 2 NaN NaN NaN NaN 0 NaN NaN 0 348540 54153 7537 33822 33840 0.1260818372675203 WLKTKRWRTRY 11 Unmodified _WLKTKRWRTRY_ 0 0 0 REV__L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|16|2|sense REV__L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 531.8033447265625 3 531.975676 1592.9052 NaN NaN NaN NaN NaN NaN NaN 58.037 1 58.037 57.537 58.537 0 0 0 0 0.38417 1 12751 12751 0.094841 0 1 + 54154 26518 33823 33841 62413 62413 0.1324627882772802 WLKVRQFH 8 Unmodified _WLKVRQFH_ 0 0 0 ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2 ENST00000487109.5_1_9:139906084-139911410:-|nuORF ENST00000487109.5_1_9:139906084-139911410:-|nuORF MSMS UPN47_class_I_Rep_1 2 557.3199462890625 2 557.319443 1112.62433 NaN NaN NaN NaN NaN NaN NaN 98.419 1 102.21 101.71 102.71 3.7926 0 0 0 0.40746 1 24365 24365 0.69038 0 1 54155 1816 33824 33842 62414 62414 0.0725256790790354 WLLAAIML 8 Unmodified _WLLAAIML_ 0 0 0 L1PA16_dup605|chr1:184934050-184934479:+|1.0402550438434135|0.0160813564518098|6.02|149.0|28|3|anti-sense L1PA16_dup605|chr1:184934050-184934479:+|1.0402550438434135|0.0160813564518098|6.02|149.0|28|3|anti-sense L1PA16_dup605|chr1:184934050-184934479:+|1.0402550438434135|0.0160813564518098|6.02|149.0|28|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 465.7777404785156 2 465.777699 929.540846 0.2002 9.325E-05 -0.64895 -0.00030227 -0.44875 -0.00020902 465.777330621239 76.485 0.4631 76.485 76.226 76.689 0 51 41 2 0 0 0 0.82752 1 17813 17813 0.79363 0 1 155380 54156 14102 33825 33843 62415 62415 0.07325695415806877 WLLAAIML 8 Unmodified _WLLAAIML_ 0 0 0 L1PA16_dup605|chr1:184934050-184934479:+|1.0402550438434135|0.0160813564518098|6.02|149.0|28|3|anti-sense L1PA16_dup605|chr1:184934050-184934479:+|1.0402550438434135|0.0160813564518098|6.02|149.0|28|3|anti-sense L1PA16_dup605|chr1:184934050-184934479:+|1.0402550438434135|0.0160813564518098|6.02|149.0|28|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 465.777699 929.540846 0.0059894 2.7897E-06 -0.39967 -0.00018616 -0.39368 -0.00018337 465.7774230902794 73.041 1.6981 76.338 75.542 77.24 3.2971 -0.20456 4.7479E-05 NaN 0.79363 202 148 2 NaN NaN NaN NaN 0 NaN NaN 0 165930 54157 14102 33825 33843 0.07325695415806877 WLLAFHVIGIK 11 Unmodified _WLLAFHVIGIK_ 0 0 0 L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|51|1|anti-sense L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|51|1|anti-sense L1ME1_dup13076|chr7:27811592-27812839:-|2.1159821635755462|0.2013246936863409|3.39|151.0|51|1|anti-sense MSMS UPN47_class_I_Rep_3 4 648.8951416015625 2 648.894983 1295.77541 NaN NaN NaN NaN NaN NaN NaN 116.15 1 119.61 119.11 120.11 3.462 0 0 0 0.38417 1 28576 28576 0.35063 0 1 54158 12213 33826 33844 62416 62416 0.13935709495876836 WLLAGPTCEE 10 Unmodified _WLLAGPTCEE_ 0 0 0 nc|ENSG00000148204|Q5IJ48-3|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 MSMS UPN48_class_I_Rep_3 7 559.7647094726562 2 559.762975 1117.5114 NaN NaN NaN NaN NaN NaN NaN 22.601 1 26.351 25.851 26.851 3.7507 0 0 0 0.53105 1 2332 2332 1.4819 0.15237 1 54159 16707 33827 33845 62417 62417 -0.0426591339096376 WLLCVVKK 8 Unmodified _WLLCVVKK_ 0 0 0 L1MB8_dup1055|chr1:246596552-246597226:-|3.2099240389309096|0.0442061963844599|6.18|151.0|16|2|sense L1MB8_dup1055|chr1:246596552-246597226:-|3.2099240389309096|0.0442061963844599|6.18|151.0|16|2|sense L1MB8_dup1055|chr1:246596552-246597226:-|3.2099240389309096|0.0442061963844599|6.18|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 494.8191223144531 2 494.804248 987.593944 NaN NaN NaN NaN NaN NaN NaN 23.277 1 23.277 22.777 23.777 0 0 0 0 0.40738 1 2893 2893 0.79363 0 1 54160 10900 33828 33846 62418 62418 0.09965073198497976 WLLEKRFF 8 Unmodified _WLLEKRFF_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MSMS UPN47_class_I_Rep_3 4 569.7581176757812 2 569.824027 1137.6335 NaN NaN NaN NaN NaN NaN NaN 13.425 1 16.798 16.298 17.298 3.3734 0 0 0 0.40738 1 314 314 0.79363 0 1 + 54161 21331 33829 33847 62419 62419 0.07018916473566605 WLLFIHMK 8 Unmodified _WLLFIHMK_ 0 0 0 REV__ENST00000396930.3_2_8:41906783-41907140:-|nuORF REV__ENST00000396930.3_2_8:41906783-41907140:-|nuORF MSMS UPN47_class_I_Rep_3 4 544.3079833984375 2 544.309698 1086.60484 NaN NaN NaN NaN NaN NaN NaN 33.333 1 36.608 36.108 37.108 3.2748 0 0 0 0.40581 1 5928 5928 2.8892 0 1 + 54162 22127 33830 33848 62420 62420 0.06500475572761388 WLLFLAGWAP 10 Unmodified _WLLFLAGWAP_ 0 0 0 REV__ENSG00000169704|ENST00000307395|GP9 REV__ENSG00000169704|ENST00000307395|GP9 MSMS UPN48_class_I_Rep_2 6 587.32666015625 2 587.326402 1172.63825 NaN NaN NaN NaN NaN NaN NaN 63.72 1 67.194 66.694 67.694 3.4743 0 0 0 0.53105 1 14350 14350 1.8442 0 1 + 54163 20324 33831 33849 62421 62421 0.05883800616311419 WLLFRVFV 8 Unmodified _WLLFRVFV_ 0 0 0 L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|112|3|anti-sense L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|112|3|anti-sense L1M2_dup230|chr1:100000744-100002612:-|1.32174901333568|0.0658808897926707|4.33|151.0|112|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.3218994140625 2 540.323663 1078.63277 NaN NaN NaN NaN NaN NaN NaN 29.502 1 29.502 29.002 30.002 0 0 0 0 0.40738 1 4681 4681 0.79363 0 1 54164 8667 33832 33850 62422 62422 0.09660121824504131 WLLFRWWRRRW 11 Unmodified _WLLFRWWRRRW_ 0 0 0 ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF MSMS UPN46_class_I_Rep_3 1 587.6629638671875 3 587.663544 1759.9688 NaN NaN NaN NaN NaN NaN NaN 39.662 1 39.662 39.162 40.162 0 0 0 0 0.38417 1 7638 7638 0.094841 0.094841 1 54165 6704 33833 33851 62423 62423 0.11921684055459991 WLLFVWKK 8 Unmodified _WLLFVWKK_ 0 0 0 L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|28|1|anti-sense L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|28|1|anti-sense L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_3 4 560.34130859375 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 94.707 1 98.114 97.614 98.614 3.4068 0 0 0 0.40738 1 23563 23563 0.79363 0 1 54166 8509 33834 33852 62424 62424 0.10948694858598174 WLLFVWKK 8 Unmodified _WLLFVWKK_ 0 0 0 L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|28|1|anti-sense L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|28|1|anti-sense L1M1_dup2125|chr3:196918335-196919067:+|2.855076974579758|0.1971327173291787|3.86|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_3 7 560.3409423828125 2 560.339313 1118.66407 NaN NaN NaN NaN NaN NaN NaN 97.084 1 100.99 100.49 101.49 3.9084 0 0 0 0.40738 1 23014 23014 0.79363 0 1 54167 8509 33834 33852 62425 62425 0.10948694858598174 WLLHVSSLY 9 Unmodified _WLLHVSSLY_ 0 0 0 REV__L1MD1_dup5740|chr16:859969-860320:-|1.531679213937453|0.3318895950544062|2.21|151.0|23|2|anti-sense REV__L1MD1_dup5740|chr16:859969-860320:-|1.531679213937453|0.3318895950544062|2.21|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_3 4 559.3050537109375 2 559.305667 1116.59678 NaN NaN NaN NaN NaN NaN NaN 25.181 1 28.532 28.032 29.032 3.3509 0 0 0 0.39428 1 3499 3499 2.0598 0 1 + 54168 27359 33835 33853 62426 62426 0.04314619856995705 WLLIIWLWP 9 Unmodified _WLLIIWLWP_ 0 0 0 REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|61|3|sense REV__PABL_B-int_dup21|chr2:73758416-73760464:+|3.6028319879633863|0.2237428612362349|4.01|151.0|61|3|sense MSMS UPN48_class_I_Rep_2 6 620.369873046875 2 620.36807 1238.72159 NaN NaN NaN NaN NaN NaN NaN 43.257 1 47.019 46.519 47.519 3.7617 0 0 0 0.40038 1 8108 8108 0.6015 0 1 + 54169 32156 33836 33854 62427 62427 0.11177537064168064 WLLIPWQM 8 Unmodified _WLLIPWQM_ 0 0 0 L1MA1_dup1459|chr6:33262066-33263079:+|1.882841249286089|0.4964778200157228|1.92|151.0|45|1|anti-sense L1MA1_dup1459|chr6:33262066-33263079:+|1.882841249286089|0.4964778200157228|1.92|151.0|45|1|anti-sense L1MA1_dup1459|chr6:33262066-33263079:+|1.882841249286089|0.4964778200157228|1.92|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 543.7955932617188 2 543.793881 1085.57321 NaN NaN NaN NaN NaN NaN NaN 41.279 1 44.924 44.424 45.424 3.6458 0 0 0 0.40738 1 7439 7439 0.79363 0 1 54170 9262 33837 33855 62428 62428 0.03384482818819379 WLLKKIII 8 Unmodified _WLLKKIII_ 0 0 0 L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 513.8607788085938 2 513.857338 1025.70012 -0.17849 -9.1718E-05 0.72087 0.00037042 0.54238 0.00027871 514.3586108235085 19.177 0.083673 19.177 19.128 19.212 0 13 8 2 0 0 0 0.82752 1 1788 1788 0 0 1 64427 54171 9005 33838 33856 62429 62429 0.1883015203547984 WLLKKIII 8 Unmodified _WLLKKIII_ 0 0 0 L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 514.219482421875 2 513.857338 1025.70012 -0.049194 -2.5279E-05 1.2997 0.00066788 1.2505 0.0006426 514.3584018520469 25.033 0.10574 25.033 24.96 25.066 0 10 9 2 0 0 0 0.72333 1 3368 3368 0 0 1 148010 54172 9005 33838 33856 62430 62430 0.1883015203547984 WLLKKIII 8 Unmodified _WLLKKIII_ 0 0 0 L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 513.3538818359375 2 513.857338 1025.70012 -0.10786 -5.5423E-05 1.0403 0.00053455 0.93241 0.00047912 514.3579369137782 22.371 0.03854 22.371 22.346 22.384 0 6 3 2 0 0 0 0.72333 1 2648 2648 0 0 1 13338 54173 9005 33838 33856 62431 62431 0.1883015203547984 WLLKKIII 8 Unmodified _WLLKKIII_ 0 0 0 L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense L1M4b_dup3234|chr12:45772430-45773862:+|1.523256898527929|0.0186469975385377|6.35|151.0|81|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 514.35888671875 2 513.857338 1025.70012 -0.14303 -7.3498E-05 1.8685 0.00096016 1.7255 0.00088666 514.3586388957748 20.774 0.089809 20.774 20.736 20.825 0 10 8 2 0 0 0 0.72333 1 2223 2223 0 0 1 36232 54174 9005 33838 33856 62432 62432 0.1883015203547984 WLLKRLPWK 9 Unmodified _WLLKRLPWK_ 0 0 0 MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|30|2|sense MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|30|2|sense MSTD-int_dup371|chr8:96322661-96324413:-|4.592637281521749|0.3933296497158214|3.55|151.0|30|2|sense MSMS UPN46_class_I_Rep_3 1 620.829345703125 2 620.389868 1238.76518 NaN NaN NaN NaN NaN NaN NaN 84.007 1 84.007 83.507 84.507 0 0 0 0 0.4007 1 19973 19973 0.52476 0 1 54175 16603 33839 33857 62433 62433 0.15535146561296642 WLLKTALI 8 Unmodified _WLLKTALI_ 0 0 0 L1PA5_dup1644|chr3:149946321-149947391:-|1.5602204035177678|0.0613927172568031|4.67|151.0|71|3|anti-sense L1PA5_dup1644|chr3:149946321-149947391:-|1.5602204035177678|0.0613927172568031|4.67|151.0|71|3|anti-sense L1PA5_dup1644|chr3:149946321-149947391:-|1.5602204035177678|0.0613927172568031|4.67|151.0|71|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.3086242675781 2 479.310221 956.605889 NaN NaN NaN NaN NaN NaN NaN 62.555 1 66.028 65.528 66.528 3.4738 0 0 0 0.3903 1 13990 13990 11.64 0.52583 1 54176 14429 33840 33858 62434 62434 0.12585013213322327 WLLKWRIV 8 Unmodified _WLLKWRIV_ 0 0 0 REV__L1M4_dup3554|chr3:71340939-71341486:+|1.450132111178563|0.0056209919198673|8.01|149.0|22|1|anti-sense REV__L1M4_dup3554|chr3:71340939-71341486:+|1.450132111178563|0.0056209919198673|8.01|149.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 557.3510131835938 2 557.350212 1112.68587 NaN NaN NaN NaN NaN NaN NaN 77.524 1 81.125 80.625 81.625 3.6016 0 0 0 0.40746 1 18316 18316 0.69038 0 1 + 54177 24426 33841 33859 62435 62435 0.13403499607170488 WLLLADIYI 9 Unmodified _WLLLADIYI_ 0 0 0 ENST00000497425.1_1_2:166736340-166740450:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B ENST00000497425.1_1_2:166736340-166740450:-|nuORF ENST00000497425.1_1_2:166736340-166740450:-|nuORF MSMS UPN47_class_I_Rep_3 4 560.3285522460938 2 560.326068 1118.63758 NaN NaN NaN NaN NaN NaN NaN 54.174 1 57.36 56.86 57.86 3.1856 0 0 0 0.19137 1 12279 12279 16.942 3.0362 1 54178 2431 33842 33860 62436 62436 0.08300961176587407 WLLLVHDFLH 10 Unmodified _WLLLVHDFLH_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|1|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|5|intron;VPS13D|p.Q3021Pfs*39|1|0.05|ENSG00000048707|chr1:12346640-12346641|-/C|frameshift_variant;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|6|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|4|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|2|intron;ENSG00000048707.15,VPS13D,chr1,+,I31.1,12318338,12319496|26|3.95|3|intron;ENST00000487188.1_1_1:12371595-12395946:+|nuORF;ENST00000460333.5_1_1:12359354-12409038:+|nuORF nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS UPN48_class_I_Rep_1 5 646.8627319335938 2 646.861141 1291.70773 NaN NaN NaN NaN NaN NaN NaN 103.46 1 107.08 106.58 107.58 3.6209 0 0 0 0.53105 1 24941 24941 3.5965 0.60125 1 54179 897 33843 33861 62437 62437 0.07354259565090615 WLLMGLAV 8 Unmodified _WLLMGLAV_ 0 0 0 ENSG00000099960|ENST00000382932|SLC7A4 ENSG00000099960|ENST00000382932|SLC7A4 ENSG00000099960|ENST00000382932|SLC7A4 MSMS UPN47_class_I_Rep_2 3 451.76300048828125 2 451.762049 901.509546 NaN NaN NaN NaN NaN NaN NaN 70.32 1 73.603 73.103 74.103 3.2828 0 0 0 0.39167 1 17127 17127 11.114 0 1 54180 1457 33844 33862 62438 62438 0.05485122381730889 WLLMNRPPP 9 Unmodified _WLLMNRPPP_ 0 0 0 nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000120903|ENST00000407991|CHRNA2 nc|ENSG00000120903|Q15822-2|CHRNA2 nc|ENSG00000120903|Q15822-2|CHRNA2 MSMS UPN48_class_I_Rep_1 5 562.3078002929688 2 562.307687 1122.60082 NaN NaN NaN NaN NaN NaN NaN 74.859 1 78.349 77.849 78.849 3.49 0 0 0 0.39428 1 17708 17708 2.0598 0 1 54181 2343 33845 33863 62439 62439 0.04442386079062999 WLLQNLTLF 9 Unmodified _WLLQNLTLF_ 0 0 0 L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|53|2|anti-sense L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|53|2|anti-sense L1M5_dup18310|chr5:143289091-143289990:+|1.9167906645273127|0.2065189206417999|3.21|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_3 4 574.3272094726562 2 574.329142 1146.64373 NaN NaN NaN NaN NaN NaN NaN 66.346 1 69.531 69.031 70.031 3.1853 0 0 0 0.22485 1 15996 15996 14.838 0 1 54182 9103 33846 33864 62440 62440 0.07627479408120053 WLLRWLHI 8 Unmodified _WLLRWLHI_ 0 0 0 L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|48|1|anti-sense L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|48|1|anti-sense L1MC4_dup22872|chr19:4998356-4999597:-|2.1746714266221066|0.0294967906501293|6.2|151.0|48|1|anti-sense MSMS UPN48_class_I_Rep_3 7 568.8419799804688 2 568.840011 1135.66547 NaN NaN NaN NaN NaN NaN NaN 74.642 1 78.193 77.693 78.693 3.5505 0 0 0 0.40604 1 17494 17494 2.5775 0 1 54183 11466 33847 33865 62441 62441 0.10306328947353904 WLLSWEVL 8 Unmodified _WLLSWEVL_ 0 0 0 ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2 ENST00000532206.1_1_16:50731151-50744498:+|nuORF ENST00000532206.1_1_16:50731151-50744498:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 523.2893676757812 2 523.289485 1044.56442 0.26898 0.00014076 -0.2312 -0.00012098 0.037783 1.9772E-05 523.2893003393347 66.389 1.1585 69.747 69.382 70.54 3.3576 231 83 4 0 0 0 0.82752 1 15922 15922 13.508 0 1 965270 54184 4290 33848 33866 62442 62442 0.04391832454007272 WLLTPYQMY 9 Unmodified _WLLTPYQMY_ 0 0 0 L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|162|3|anti-sense L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|162|3|anti-sense L1MA7_dup3227|chr6:144610883-144613517:+|2.4871513856571306|0.1344054910463299|4.21|151.0|162|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 405.2997131347656 3 405.535332 1213.58417 -1.2774 -0.00051804 0.48829 0.00019802 -0.78914 -0.00032002 405.53476851899364 31.64 0.09864 34.939 34.857 34.955 3.2991 10 7 2 0 0 0 0.12509 1 5395 5395 1.1933 0 1 11989 54185 10016 33849 33867 62443 62443 -0.01408159597554004 WLLTVLFLF 9 Unmodified _WLLTVLFLF_ 0 0 0 REV__L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|154|3|anti-sense REV__L1MB5_dup3548|chr8:73727256-73729582:-|2.759183568463379|0.036153655640791|6.25|151.0|154|3|anti-sense MSMS UPN47_class_I_Rep_1 2 576.3604736328125 2 576.346803 1150.67905 NaN NaN NaN NaN NaN NaN NaN 83.056 1 86.594 86.094 87.094 3.5386 0 0 0 0.39428 1 20763 20763 2.0598 0 1 + 54186 26060 33850 33868 62444 62444 0.10974141935935222 WLLVLAIC 8 Unmodified _WLLVLAIC_ 0 0 0 REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|109|2|anti-sense REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|109|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 465.777587890625 2 465.777699 929.540846 0.10541 4.9098E-05 -0.52529 -0.00024467 -0.41988 -0.00019557 465.77726928968536 72.295 0.30457 75.768 75.54 75.845 3.4732 36 27 2 0 0 0 0.82752 1 16920 16920 0.79363 0 1 116990 + 54187 27876 33851 33869 62445 62445 0.07325695415795508 WLLVLAIC 8 Unmodified _WLLVLAIC_ 0 0 0 REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|109|2|anti-sense REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|109|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 465.777699 929.540846 0.10541 4.9098E-05 -0.52529 -0.00024467 -0.41988 -0.00019557 465.77726928968536 72.295 0.30457 75.768 75.54 75.845 3.4732 0.0018252 0.00013962 NaN 0.79363 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 116990 + 54188 27876 33851 33869 0.07325695415795508 WLLVLAIC 8 Unmodified _WLLVLAIC_ 0 0 0 REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|109|2|anti-sense REV__L1ME2_dup7055|chr9:114019070-114021088:-|1.288095542340027|0.0808577413564774|3.99|150.0|109|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 465.777699 929.540846 0.18653 8.6879E-05 -0.6338 -0.00029521 -0.44728 -0.00020833 465.777316699005 72.275 0.30998 75.839 75.669 75.979 3.5645 0.073428 3.8536E-05 NaN 0.79363 45 28 2 NaN NaN NaN NaN 0 NaN NaN 0 197420 + 54189 27876 33851 33869 0.07325695415795508 WLLVLCFFLY 10 Unmodified _WLLVLCFFLY_ 0 0 0 REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|98|1|anti-sense REV__L1PB1_dup8379|chrX:118412724-118415514:-|3.158518058883742|0.1006614580015476|4.97|151.0|98|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.9094543457031 3 439.575239 1315.70389 0.054034 2.3752E-05 -0.39078 -0.00017178 -0.33674 -0.00014802 439.5750427030806 37.451 1.2253 41.114 40.644 41.869 3.663 237 126 2 0 0 0 0.55949 2 6420 6420;6499 4.1895 1.1172 1 209620 + 54190 30499 33852 33870 62446;62447 62446 0.058664537470122013 WLLWHHLET 9 Unmodified _WLLWHHLET_ 0 0 0 REV__MLT2B3_dup351|chr2:86558981-86559501:+|1.0915343993512123|0.1011587573815323|3.43|150.0|3|1|sense REV__MLT2B3_dup351|chr2:86558981-86559501:+|1.0915343993512123|0.1011587573815323|3.43|150.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 617.8204345703125 2 617.822015 1233.62948 NaN NaN NaN NaN NaN NaN NaN 64.053 1 67.51 67.01 68.01 3.4578 0 0 0 0.40038 1 14469 14469 0.6015 0 1 + 54191 31821 33853 33871 62448 62448 0.02200826979856174 WLLWYRII 8 Unmodified _WLLWYRII_ 0 0 0 REV__ENST00000397261.7_1_3:9848255-9848414:+|nuORF REV__ENST00000397261.7_1_3:9848255-9848414:+|nuORF MSMS UPN48_class_I_Rep_1 5 581.84326171875 2 581.84222 1161.66989 NaN NaN NaN NaN NaN NaN NaN 88.759 1 92.382 91.882 92.882 3.6229 0 0 0 0.40746 1 21298 21298 0.69038 0 1 + 54192 22129 33854 33872 62449 62449 0.09551793370269479 WLLYLWLV 8 Unmodified _WLLYLWLV_ 0 0 0 REV__L1MB7_dup10440|chr9:412435-413857:+|2.382162482333236|0.0155774708060718|7.26|151.0|51|1|anti-sense REV__L1MB7_dup10440|chr9:412435-413857:+|2.382162482333236|0.0155774708060718|7.26|151.0|51|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.8299560546875 2 553.325871 1104.63719 0.41214 0.00022805 1.4498 0.00080222 1.862 0.0010303 553.8293734495046 87.283 0.1423 87.283 87.223 87.365 0 13 11 2 0 0 0 0.82752 1 20910 20910 0.79363 0 1 155910 + 54193 26112 33855 33873 62450 62450 0.08905586247419706 WLMKKGGF 8 Unmodified _WLMKKGGF_ 0 0 0 REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|288|3|anti-sense REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|288|3|anti-sense MSMS UPN48_class_I_Rep_1 5 483.7652893066406 2 483.765123 965.515694 NaN NaN NaN NaN NaN NaN NaN 118.35 1 121.97 121.47 122.47 3.6189 0 0 0 0.40798 1 28864 28864 0 0 1 + 54194 29294 33856 33874 62451 62451 0.03155640613272226 WLMLLYHL 8 Unmodified _WLMLLYHL_ 0 0 0 LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|40|3|anti-sense LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|40|3|anti-sense LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|40|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.8021240234375 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 25.653 1 25.653 25.153 26.153 0 0 0 0 0.40738 1 3552 3552 0.79363 0 1 54195 15652 33857 33875 62452 62452 0.048567693358791075 WLMLLYHL 8 Unmodified _WLMLLYHL_ 0 0 0 LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|40|3|anti-sense LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|40|3|anti-sense LTR49_dup1157|chr12:120800982-120801565:+|1.300430480862524|0.035511150746533|5.19|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_1 5 544.8021850585938 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 18.903 1 22.435 21.935 22.935 3.5313 0 0 0 0.40738 1 1348 1348 0.79363 0 1 54196 15652 33857 33875 62453 62453 0.048567693358791075 WLMREFTPI 9 Unmodified _WLMREFTPI_ 0 0 0 REV__ENST00000586001.1_1_17:40629662-40630664:+|nuORF REV__ENST00000586001.1_1_17:40629662-40630664:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 596.2877807617188 2 596.812802 1191.61105 0.48535 0.00028966 1.5277 0.00091175 2.013 0.0012014 596.8135298136658 49.943 0.58713 53.169 52.941 53.528 3.2262 47 33 2 0 0 0 0.1154 1 11034 11034 13.042 2.243 1 70365 + 54197 17631 33858 33876 62454 62454 0.02290949013649879 WLNFWKILG 9 Unmodified _WLNFWKILG_ 0 0 0 L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|45|1|anti-sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|45|1|anti-sense L1PREC2_dup2362|chr5:60076458-60078110:-|1.0517276226657362|0.0091072721717796|6.85|147.0|45|1|anti-sense MSMS UPN47_class_I_Rep_3 4 588.7996215820312 2 588.831852 1175.64915 NaN NaN NaN NaN NaN NaN NaN 67.738 1 70.929 70.429 71.429 3.1914 0 0 0 0.39518 1 16418 16418 1.8442 0.36234 1 54198 15437 33859 33877 62455 62455 0.06835202990600919 WLNNFFALP 9 Unmodified _WLNNFFALP_ 0 0 0 RARA-PML|2|fusion;RARA-PML|8|fusion;RARA-PML|11|fusion;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML RARA-PML|2|fusion RARA-PML|2|fusion MSMS UPN48_class_I_Rep_1 5 561.29052734375 2 561.292559 1120.57057 NaN NaN NaN NaN NaN NaN NaN 31.697 1 35.231 34.731 35.731 3.5342 0 0 0 0.38639 1 4722 4722 3.9444 1.3669 1 54199 16697 33860 33878 62456 62456 0.01510350685521189 WLNRKTKIV 9 Unmodified _WLNRKTKIV_ 0 0 0 REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF MSMS UPN47_class_I_Rep_1 2 579.3616943359375 2 579.361308 1156.70806 NaN NaN NaN NaN NaN NaN NaN 110.75 1 114.33 113.83 114.83 3.5835 0 0 0 0.4007 1 27306 27306 0.52476 0 1 + 54200 22254 33861 33879 62457 62457 0.13597679284907827 WLPFLSVDR 9 Unmodified _WLPFLSVDR_ 0 0 0 ENSG00000163823|ENST00000296140|CCR1 ENSG00000163823|ENST00000296140|CCR1 ENSG00000163823|ENST00000296140|CCR1 MSMS UPN48_class_I_Rep_1 5 566.811279296875 2 566.811116 1131.60768 NaN NaN NaN NaN NaN NaN NaN 44.211 1 47.724 47.224 48.224 3.5132 0 0 0 0.39326 1 8388 8388 2.3027 0 1 54201 4049 33862 33880 62458 62458 0.04714022231291892 WLPFTVYCL 9 Unmodified _WLPFTVYCL_ 0 0 0 ENSG00000181773|ENST00000374024|GPR3 ENSG00000181773|ENST00000374024|GPR3 ENSG00000181773|ENST00000374024|GPR3 MSMS UPN46_class_I_Rep_3 1 571.4710693359375 2 571.291171 1140.56779 NaN NaN NaN NaN NaN NaN NaN 54.226 1 54.226 53.726 54.726 0 0 0 0 0.39428 1 11723 11723 2.0598 0.40713 1 54202 4927 33863 33881 62459 62459 0.0031275923636258085 WLPKNQSAL 9 Unmodified _WLPKNQSAL_ 0 0 0 REV__ENSG00000083642|ENST00000315596|PDS5B REV__ENSG00000083642|ENST00000315596|PDS5B MSMS UPN46_class_I_Rep_3 1 528.79345703125 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 35.43 1 35.43 34.93 35.93 0 0 0 0 0.29868 1 6450 6450 10.824 0.024421 1 + 54203 17935 33864 33882 62460 62460 0.0508144919717779 WLPKPLRS 8 Unmodified _WLPKPLRS_ 0 0 0 ENST00000462644.5_1_1:160252805-160253363:-|nuORF ENST00000462644.5_1_1:160252805-160253363:-|nuORF ENST00000462644.5_1_1:160252805-160253363:-|nuORF MSMS UPN47_class_I_Rep_3 4 498.80377197265625 2 498.803094 995.591636 NaN NaN NaN NaN NaN NaN NaN 53.253 1 56.448 55.948 56.948 3.1948 0 0 0 0.40738 1 11998 11998 0.79363 0 1 54204 6869 33865 33883 62461 62461 0.09366360785043071 WLPLGQWT 8 Unmodified _WLPLGQWT_ 0 0 0 L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|6|1|sense L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|6|1|sense L1ME2z_dup1399|chr3:141887489-141888248:+|1.5264201966151325|0.2124039237212296|2.85|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 500.76654052734375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 25.717 1 29.35 28.85 29.85 3.6332 0 0 0 0.40738 1 3169 3169 0.79363 0 1 54205 12546 33866 33884 62462 62462 0.018023926227101583 WLPLLYSY 8 Unmodified _WLPLLYSY_ 0 0 0 REV__HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|195|1|anti-sense REV__HERVL-int_dup1836|chr12:26776000-26781630:+|7.17034309188193|0.1510280480700981|5.57|151.0|195|1|anti-sense MSMS UPN48_class_I_Rep_2 6 527.7861938476562 2 527.784036 1053.55352 NaN NaN NaN NaN NaN NaN NaN 25.987 1 29.62 29.12 30.12 3.6332 0 0 0 0.40604 1 3245 3245 2.5775 0 1 + 54206 23866 33867 33885 62463 62463 0.028884300797017204 WLPLWQPI 8 Unmodified _WLPLWQPI_ 0 0 0 REV__MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|64|3|anti-sense REV__MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|64|3|anti-sense MSMS UPN46_class_I_Rep_3 1 526.326904296875 2 526.80002 1051.58549 NaN NaN NaN NaN NaN NaN NaN 30.008 1 30.008 29.508 30.508 0 0 0 0 0.40738 1 4828 4828 0.79363 0 1 + 54207 31428 33868 33886 62464 62464 0.06175842553511757 WLPPTKLP 8 Unmodified _WLPPTKLP_ 0 0 0 REV__HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|46|3|sense REV__HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|46|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 476.1983642578125 2 476.286746 950.558939 0.18072 8.6076E-05 3.0244 0.0014405 3.2051 0.0015265 476.28826904744255 79.137 0.076294 82.492 82.453 82.529 3.3554 8 5 2 0 0 0 0.72333 1 19688 19688 2.3027 0 1 45450 + 54208 23676 33869 33887 62465 62465 0.08168153662177247 WLPPTPQL 8 Unmodified _WLPPTPQL_ 0 0 0 L1MD2_dup666|chr2:26046890-26047403:-|2.00541663031849|0.0157626656733758|6.99|151.0|31|2|anti-sense L1MD2_dup666|chr2:26046890-26047403:-|2.00541663031849|0.0157626656733758|6.99|151.0|31|2|anti-sense L1MD2_dup666|chr2:26046890-26047403:-|2.00541663031849|0.0157626656733758|6.99|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_1 2 476.27001953125 2 476.268553 950.522553 NaN NaN NaN NaN NaN NaN NaN 112.13 1 115.71 115.21 116.21 3.572 0 0 0 0.40625 1 27672 27672 2.3027 0 1 54209 12018 33870 33888 62466 62466 0.045312767654763775 WLPQEIKH 8 Unmodified _WLPQEIKH_ 0 0 0 REV__L1MA4A_dup2210|chr5:175941934-175943345:+|1.1679748715211995|0.0741576304833116|3.98|149.0|8|1|sense REV__L1MA4A_dup2210|chr5:175941934-175943345:+|1.1679748715211995|0.0741576304833116|3.98|149.0|8|1|sense MSMS UPN48_class_I_Rep_2 6 525.7905883789062 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 27.06 1 30.691 30.191 31.191 3.6311 0 0 0 0.40604 1 3533 3533 2.5775 0 1 + 54210 25243 33871 33889 62467 62467 0.04301466542779053 WLPVFWLHRRK 11 Unmodified _WLPVFWLHRRK_ 0 0 0 Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|4|1|sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|4|1|sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|4|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 513.300537109375 3 513.301612 1536.88301 0.33013 0.00016946 -0.19399 -9.9577E-05 0.13614 6.9879E-05 513.3013059835702 106.76 0.42957 110.44 110.23 110.66 3.6834 82 62 2 0 0 0 22.551 1 25197 25197 0.50596 0.41111 1 218680 54211 33271 33872 33890 62468 62468 0.1360409914993852 WLPVWRIG 8 Unmodified _WLPVWRIG_ 0 0 0 REV__L1P3_dup2652|chr12:11256066-11261811:+|5.774046497810674|0.102807162033627|5.81|151.0|74|2|sense REV__L1P3_dup2652|chr12:11256066-11261811:+|5.774046497810674|0.102807162033627|5.81|151.0|74|2|sense MSMS UPN46_class_I_Rep_3 1 513.7798461914062 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 97.049 1 97.049 96.549 97.549 0 0 0 0 0.40738 1 23605 23605 0.79363 0 1 + 54212 28890 33873 33891 62469 62469 0.06930378130596182 WLQKAIRCF 9 Unmodified _WLQKAIRCF_ 0 0 0 MER51A_dup61|chr1:235669278-235669899:+|2.352766528801335|0.1451792121987301|4.02|150.0|2|1|sense MER51A_dup61|chr1:235669278-235669899:+|2.352766528801335|0.1451792121987301|4.02|150.0|2|1|sense MER51A_dup61|chr1:235669278-235669899:+|2.352766528801335|0.1451792121987301|4.02|150.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 582.7753295898438 2 582.820961 1163.62737 NaN NaN NaN NaN NaN NaN NaN 36.193 1 39.703 39.203 40.203 3.5101 0 0 0 0.39518 1 6016 6016 1.8442 0 1 54213 16085 33874 33892 62470 62470 0.05210074970364076 WLQLGKEER 9 Unmodified _WLQLGKEER_ 0 0 0 L1ME3Cz_dup2821|chr3:185779822-185780359:+|1.7645748966010013|0.0034939391618398|8.98|148.0|15|2|sense L1ME3Cz_dup2821|chr3:185779822-185780359:+|1.7645748966010013|0.0034939391618398|8.98|148.0|15|2|sense L1ME3Cz_dup2821|chr3:185779822-185780359:+|1.7645748966010013|0.0034939391618398|8.98|148.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.818359375 2 579.81693 1157.61931 0.40978 0.0002376 0.0065188 3.7797E-06 0.4163 0.00024138 579.8169034216139 42.916 0.60223 46.673 46.355 46.957 3.7579 84 48 2 0 0 0 0.49026 1 7989 7989 1.6526 1.6526 1 213550 54214 12770 33875 33893 62471 62471 0.0468021925460107 WLQLIVCL 8 Unmodified _WLQLIVCL_ 0 0 0 REV__LTR78B_dup2248|chr11:31724696-31725619:-|1.353846936730048|0.0463925838521636|4.87|149.0|40|2|anti-sense REV__LTR78B_dup2248|chr11:31724696-31725619:-|1.353846936730048|0.0463925838521636|4.87|149.0|40|2|anti-sense MSMS UPN48_class_I_Rep_1 5 494.28955078125 2 494.288431 986.562309 NaN NaN NaN NaN NaN NaN NaN 56.786 1 60.287 59.787 60.787 3.5014 0 0 0 0.4032 1 12248 12248 6.3541 0 1 + 54215 31011 33876 33894 62472 62472 0.06849080444544597 WLQLIVCL 8 Unmodified _WLQLIVCL_ 0 0 0 REV__LTR78B_dup2248|chr11:31724696-31725619:-|1.353846936730048|0.0463925838521636|4.87|149.0|40|2|anti-sense REV__LTR78B_dup2248|chr11:31724696-31725619:-|1.353846936730048|0.0463925838521636|4.87|149.0|40|2|anti-sense MSMS UPN48_class_I_Rep_2 6 494.28912353515625 2 494.288431 986.562309 NaN NaN NaN NaN NaN NaN NaN 56.75 1 60.283 59.783 60.783 3.5333 0 0 0 0.4032 1 12213 12213 6.3541 0 1 + 54216 31011 33876 33894 62473 62473 0.06849080444544597 WLQQGKKPK 9 Unmodified _WLQQGKKPK_ 0 0 0 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 MSMS UPN46_class_I_Rep_3 1 556.8135375976562 2 556.832383 1111.65021 NaN NaN NaN NaN NaN NaN NaN 57.237 1 57.237 56.737 57.737 0 0 0 0 0.39428 1 12529 12529 2.0598 0 1 + 54217 20227 33877 33895 62474 62474 0.09885417359510029 WLQRGLPEE 9 Unmodified _WLQRGLPEE_ 0 0 0 REV__nc|ENSG00000135439|Q99490-2|AGAP2 REV__nc|ENSG00000135439|Q99490-2|AGAP2 MULTI-MSMS UPN47_class_I_Rep_3 4 564.7987670898438 2 564.29583 1126.57711 -0.077333 -4.3639E-05 2.4109 0.0013605 2.3336 0.0013168 564.2968845253196 37.146 0.26928 40.393 40.347 40.617 3.247 26 19 2 0 0 0 0.46869 1 7118 7118 3.9444 0.94915 1 65601 + 54218 19137 33878 33896 62475 62475 0.018882438462242135 WLQRVMKY 8 Unmodified _WLQRVMKY_ 0 0 0 REV__L1ME1_dup21718|chr11:117066838-117067693:+|9.315467991631566|0.0290213230132324|8.33|151.0|26|3|sense REV__L1ME1_dup21718|chr11:117066838-117067693:+|9.315467991631566|0.0290213230132324|8.33|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 562.3353881835938 2 562.307687 1122.60082 NaN NaN NaN NaN NaN NaN NaN 55.728 1 55.728 55.228 56.228 0 0 0 0 0.40604 1 12122 12122 2.5775 0.51773 1 + 54219 27673 33879 33897 62476 62476 0.04442386079062999 WLRALGAVP 9 Unmodified _WLRALGAVP_ 0 0 0 ENST00000331134.10_1_17:79525220-79525361:-|nuORF ENST00000331134.10_1_17:79525220-79525361:-|nuORF ENST00000331134.10_1_17:79525220-79525361:-|nuORF MSMS UPN48_class_I_Rep_3 7 491.7964782714844 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 73.014 1 76.552 76.052 77.052 3.5373 0 0 0 0.38478 1 17061 17061 4.3292 1.7518 1 54220 6187 33880 33898 62477 62477 0.08446074267988024 WLRHNHFK 8 Unmodified _WLRHNHFK_ 0 0 0 REV__HAL1_dup2334|chr2:46557641-46558953:-|1.4723022130783794|0.071250592135049|4.37|151.0|76|2|anti-sense REV__HAL1_dup2334|chr2:46557641-46558953:-|1.4723022130783794|0.071250592135049|4.37|151.0|76|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.2221069335938 2 569.306867 1136.59918 NaN NaN NaN NaN NaN NaN NaN 61.723 1 61.723 61.223 62.223 0 0 0 0 0.40746 1 13754 13754 0.69038 0 1 + 54221 23408 33881 33899 62478 62478 0.03634513105316728 WLRHNHFK 8 Unmodified _WLRHNHFK_ 0 0 0 REV__HAL1_dup2334|chr2:46557641-46558953:-|1.4723022130783794|0.071250592135049|4.37|151.0|76|2|anti-sense REV__HAL1_dup2334|chr2:46557641-46558953:-|1.4723022130783794|0.071250592135049|4.37|151.0|76|2|anti-sense MSMS UPN46_class_I_Rep_3 1 569.3070678710938 2 569.306867 1136.59918 NaN NaN NaN NaN NaN NaN NaN 74.832 1 74.832 74.332 75.332 0 0 0 0 0.40746 1 17374 17374 0.69038 0 1 + 54222 23408 33881 33899 62479 62479 0.03634513105316728 WLRHRFAK 8 Unmodified _WLRHRFAK_ 0 0 0 REV__nc|ENSG00000137474|Q13402-5|MYO7A REV__nc|ENSG00000137474|Q13402-5|MYO7A MULTI-MSMS UPN48_class_I_Rep_1 5 557.3269653320312 2 557.32506 1112.63557 0.51108 0.00028484 1.3607 0.00075835 1.8718 0.0010432 557.3258036541534 73.486 0.083389 76.967 76.931 77.014 3.4812 10 7 2 0 0 0 0.82752 1 17330 17330 2.5775 0 1 72918 + 54223 19231 33882 33900 62480 62480 0.0837539000203833 WLRISEPIKI 10 Unmodified _WLRISEPIKI_ 0 0 0 HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|66|3|sense;HERVS71-int_dup63|chr8:8142070-8144889:+|5.402362978131311|0.1720022878832018|4.97|151.0|66|3|sense HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|66|3|sense HERVS71-int_dup66|chr8:12520775-12523594:-|4.7061500627393205|0.2821197263722061|4.06|151.0|66|3|sense MSMS UPN48_class_I_Rep_3 7 627.8840942382812 2 627.882073 1253.74959 NaN NaN NaN NaN NaN NaN NaN 104.73 1 108.45 107.95 108.95 3.7192 0 0 0 0.53105 1 24726 24726 5.7319 0.83484 1 54224 8421 33883 33901 62481 62481 0.132868152536048 WLRLRNRLF 9 Unmodified _WLRLRNRLF_ 0 0 0 REV__L1MD3_dup4163|chr15:49872329-49873047:+|4.901223640469448|0.0981086035902817|5.64|151.0|55|3|anti-sense REV__L1MD3_dup4163|chr15:49872329-49873047:+|4.901223640469448|0.0981086035902817|5.64|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_2 6 637.4605712890625 2 637.385648 1272.75674 NaN NaN NaN NaN NaN NaN NaN 72.288 1 75.853 75.353 76.353 3.5645 0 0 0 0.39518 1 16909 16909 1.8442 0 1 + 54225 27480 33884 33902 62482 62482 0.1312759264469605 WLRLRNRLF 9 Unmodified _WLRLRNRLF_ 0 0 0 REV__L1MD3_dup4163|chr15:49872329-49873047:+|4.901223640469448|0.0981086035902817|5.64|151.0|55|3|anti-sense REV__L1MD3_dup4163|chr15:49872329-49873047:+|4.901223640469448|0.0981086035902817|5.64|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_3 7 637.3843383789062 2 637.385648 1272.75674 NaN NaN NaN NaN NaN NaN NaN 72.337 1 75.864 75.364 76.364 3.5266 0 0 0 0.39518 1 16854 16854 1.8442 0 1 + 54226 27480 33884 33902 62483 62483 0.1312759264469605 WLRNWTHFA 9 Unmodified _WLRNWTHFA_ 0 0 0 REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 615.8153686523438 2 615.811982 1229.60941 0.49009 0.0003018 -0.52561 -0.00032368 -0.035527 -2.1878E-05 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.48643 1 15656 15656 2.0598 0.57785 1 904810 + 54227 21111 33885 33903 62484 62484 0.0037907603989424388 WLRPRRVM 8 Unmodified _WLRPRRVM_ 0 0 0 L1MEg_dup12630|chr16:28460923-28461312:+|1.3898992413271567|0.0621011691329649|4.48|151.0|15|3|sense L1MEg_dup12630|chr16:28460923-28461312:+|1.3898992413271567|0.0621011691329649|4.48|151.0|15|3|sense L1MEg_dup12630|chr16:28460923-28461312:+|1.3898992413271567|0.0621011691329649|4.48|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 557.3270263671875 2 557.326745 1112.63894 NaN NaN NaN NaN NaN NaN NaN 73.387 1 76.868 76.368 77.368 3.4812 0 0 0 0.40604 1 17289 17289 2.5775 0 1 54228 13363 33886 33904 62485 62485 0.08712316784385621 WLRQSKDR 8 Unmodified _WLRQSKDR_ 0 0 0 REV__ENSG00000172935|ENST00000309099|MRGPRF REV__ENSG00000172935|ENST00000309099|MRGPRF MSMS UPN46_class_I_Rep_3 1 544.8010864257812 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 28.759 1 28.759 28.259 29.259 0 0 0 0 0.40604 1 4462 4462 2.5775 0 1 + 54229 20465 33887 33905 62486 62486 0.04838485660229708 WLRQSVHDQ 9 Unmodified _WLRQSVHDQ_ 0 0 0 L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|61|2|sense L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|61|2|sense L1PB1_dup12669|chr21:7862798-7865745:-|1.423818353085879|0.3242240635788108|2.13|150.0|61|2|sense MSMS UPN47_class_I_Rep_1 2 584.796875 2 584.796529 1167.5785 NaN NaN NaN NaN NaN NaN NaN 22.622 1 26.327 25.827 26.827 3.7042 0 0 0 0.39518 1 2661 2661 1.8442 0 1 54230 15044 33888 33906 62487 62487 0.0014187793501605483 WLRRRWWRREV 11 Unmodified _WLRRRWWRREV_ 0 0 0 REV__ENST00000284971.7_1_21:27102007-27107256:-|nuORF REV__ENST00000284971.7_1_21:27102007-27107256:-|nuORF MSMS UPN46_class_I_Rep_3 1 566.9880981445312 3 566.99032 1697.94913 NaN NaN NaN NaN NaN NaN NaN 74.166 1 74.166 73.666 74.666 0 0 0 0 0.38417 1 17204 17204 0 0 1 + 54231 21635 33889 33907 62488 62488 0.12807308044693855 WLRRVHPQ 8 Unmodified _WLRRVHPQ_ 0 0 0 ENSG00000183908|ENST00000497933|LRRC55 ENSG00000183908|ENST00000497933|LRRC55 ENSG00000183908|ENST00000497933|LRRC55 MSMS UPN47_class_I_Rep_2 3 546.314697265625 2 546.314692 1090.61483 NaN NaN NaN NaN NaN NaN NaN 55.098 1 58.408 57.908 58.908 3.3102 0 0 0 0.40746 1 12508 12508 0.69038 0 1 54232 5027 33890 33908 62489 62489 0.07314799622372448 WLRVFPYV 8 Unmodified _WLRVFPYV_ 0 0 0 REV__L1MB3_dup5499|chr6:3085636-3086030:-|1.0720186123871482|0.0588866731869227|4.19|150.0|16|1|anti-sense REV__L1MB3_dup5499|chr6:3085636-3086030:-|1.0720186123871482|0.0588866731869227|4.19|150.0|16|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3221435546875 2 540.30547 1078.59639 0.31053 0.00016778 1.0832 0.00058524 1.3937 0.00075302 540.3075850503329 68.049 0.060539 68.049 68.01 68.07 0 5 4 2 0 0 0 0.82752 1 15507 15507 0.79363 0 1 117340 + 54233 25896 33891 33909 62490 62490 0.06023244927791893 WLRVFPYV 8 Unmodified _WLRVFPYV_ 0 0 0 REV__L1MB3_dup5499|chr6:3085636-3086030:-|1.0720186123871482|0.0588866731869227|4.19|150.0|16|1|anti-sense REV__L1MB3_dup5499|chr6:3085636-3086030:-|1.0720186123871482|0.0588866731869227|4.19|150.0|16|1|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 540.30547 1078.59639 0.31053 0.00016778 1.0832 0.00058524 1.3937 0.00075302 540.3075850503329 68.049 0.060539 68.049 68.01 68.07 0 0 0 NaN 0.79363 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 117340 + 54234 25896 33891 33909 0.06023244927791893 WLRVGGHR 8 Unmodified _WLRVGGHR_ 0 0 0 REV__AluJr_dup37349|chr8:55925125-55925418:-|1.5942456098099191|0.0108882969094001|7.19|151.0|3|1|sense REV__AluJr_dup37349|chr8:55925125-55925418:-|1.5942456098099191|0.0108882969094001|7.19|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 490.7808532714844 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 45.305 1 48.822 48.322 49.322 3.5162 0 0 0 0.40746 1 8723 8723 0.69038 0 1 + 54235 17037 33892 33910 62491 62491 0.055825550425197434 WLSGTKTL 8 Unmodified _WLSGTKTL_ 0 0 0 REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5 REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5 MSMS UPN48_class_I_Rep_1 5 453.2587585449219 2 453.258185 904.501818 NaN NaN NaN NaN NaN NaN NaN 112.76 1 116.39 115.89 116.89 3.6321 0 0 0 0.40753 1 27371 27371 0.6015 0 1 + 54236 18657 33893 33911 62492 62492 0.045746863858198594 WLSIRRHKR 9 Unmodified _WLSIRRHKR_ 0 0 0 REV__L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|36|3|sense REV__L1ME3A_dup13007|chr15:99636639-99637494:-|1.4291644183793084|0.1371621428623701|3.38|151.0|36|3|sense MSMS UPN47_class_I_Rep_3 4 626.3789672851562 2 626.380897 1250.74724 NaN NaN NaN NaN NaN NaN NaN 99.44 1 102.89 102.39 103.39 3.4483 0 0 0 0.4007 1 24591 24591 0.52476 0 1 + 54237 27996 33894 33912 62493 62493 0.13189824359142222 WLSRPALLVR 10 Unmodified _WLSRPALLVR_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MSMS UPN48_class_I_Rep_1 5 404.251708984375 3 404.252147 1209.73461 NaN NaN NaN NaN NaN NaN NaN 40.029 1 43.534 43.034 44.034 3.5048 0 0 0 0.53105 1 7136 7136 0.56317 0 1 54238 3758 33895 33913 62494 62494 0.13813368176238328 WLSWKPFF 8 Unmodified _WLSWKPFF_ 0 0 0 REV__MER41-int_dup1233|chr12:24856758-24859339:+|1.0762494540455585|0.1921256214041531|2.49|148.0|153|2|anti-sense REV__MER41-int_dup1233|chr12:24856758-24859339:+|1.0762494540455585|0.1921256214041531|2.49|148.0|153|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 555.2904052734375 2 555.792195 1109.56984 -0.18475 -0.00010268 0.25061 0.00013929 0.065861 3.6605E-05 555.7922618789087 12.764 0.062469 12.764 12.731 12.793 0 5 3 2 0 0 0 0.72333 1 194 194 0.69038 0 1 13938 + 54239 31283 33896 33914 62495 62495 0.019435560364627236 WLTGKNSF 8 Unmodified _WLTGKNSF_ 0 0 0 REV__ENSG00000129636|ENST00000320640|ITFG1 REV__ENSG00000129636|ENST00000320640|ITFG1 MULTI-MSMS UPN47_class_I_Rep_3 4 476.74810791015625 2 476.747985 951.481417 0.051679 2.4638E-05 -0.048654 -2.3196E-05 0.0030253 1.4423E-06 476.7479490980646 70.724 0.52472 73.936 73.742 74.267 3.2113 65 43 2 0 0 0 0.82752 1 17365 17365 4.756 0 1 71980 + 54240 18926 33897 33915 62496 62496 0.0037351572600528016 WLTLSRLHPL 10 Unmodified _WLTLSRLHPL_ 0 0 0 L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|307|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|307|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|307|2|anti-sense MSMS UPN47_class_I_Rep_2 3 618.3050537109375 2 618.36659 1234.71863 NaN NaN NaN NaN NaN NaN NaN 83.672 1 87.084 86.584 87.584 3.4116 0 0 0 0.53105 1 20863 20863 1.6526 0 1 54241 14492 33898 33916 62497 62497 0.1106566193936942 WLTLSRLHPL 10 Unmodified _WLTLSRLHPL_ 0 0 0 L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|307|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|307|2|anti-sense L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|307|2|anti-sense MSMS UPN47_class_I_Rep_3 4 618.37060546875 2 618.36659 1234.71863 NaN NaN NaN NaN NaN NaN NaN 83.648 1 86.998 86.498 87.498 3.35 0 0 0 0.53105 1 20985 20985 1.6526 0 1 54242 14492 33898 33916 62498 62498 0.1106566193936942 WLTPAWIYS 9 Unmodified _WLTPAWIYS_ 0 0 0 L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|96|2|anti-sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|96|2|anti-sense L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|96|2|anti-sense MSMS UPN48_class_I_Rep_1 5 568.7940673828125 2 568.792392 1135.57023 NaN NaN NaN NaN NaN NaN NaN 62.723 1 66.186 65.686 66.686 3.4625 0 0 0 0.39428 1 14061 14061 2.0598 0.21551 1 54243 8627 33899 33917 62499 62499 0.007869309656598489 WLTQLGLYV 9 Unmodified _WLTQLGLYV_ 0 0 0 LTR86C_dup208|chr11:114068503-114069061:-|1.2836782832235711|0.1757459295952121|2.87|150.0|29|2|anti-sense LTR86C_dup208|chr11:114068503-114069061:-|1.2836782832235711|0.1757459295952121|2.87|150.0|29|2|anti-sense LTR86C_dup208|chr11:114068503-114069061:-|1.2836782832235711|0.1757459295952121|2.87|150.0|29|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.8065795898438 2 546.808042 1091.60153 NaN NaN NaN NaN NaN NaN NaN 55.014 1 58.324 57.824 58.824 3.3102 0 0 0 0.37891 1 12483 12483 5.7319 0.50118 1 54244 15723 33900 33918 62500 62500 0.0593950399975256 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.065098 3.6607E-05 -0.078317 -4.4041E-05 -0.013219 -7.4337E-06 562.334519736639 24.635 0.2735 24.635 24.429 24.702 0 46 28 3 0 0 0 0.49026 2 3241 3241;3275 1.6526 0.32309 1 118950 + 54245 28095 33901 33919 62501;62502 62501 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345336914062 2 562.334759 1122.65496 0.068533 3.8539E-05 -0.025219 -1.4182E-05 0.043314 2.4357E-05 562.3345916125757 24.791 0.14981 24.791 24.712 24.862 0 25 14 2 0 0 0 0.49026 1 3314 3314 1.6526 0.32309 1 190350 + 54246 28095 33901 33919 62503 62503 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.334716796875 2 562.334759 1122.65496 0.074187 4.1718E-05 0.12458 7.0055E-05 0.19877 0.00011177 562.3346195255814 25.017 0.039774 25.017 25.004 25.043 0 9 3 3 0 0 0 0.49026 1 3372 3372 1.6526 0.32309 1 162050 + 54247 28095 33901 33919 62504 62504 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3346557617188 2 562.334759 1122.65496 0.086412 4.8593E-05 0.015343 8.628E-06 0.10176 5.7221E-05 562.3345941654203 25.586 0.06711 25.586 25.546 25.613 0 17 6 3 0 0 0 0.49026 1 3534 3534 1.6526 0 1 205010 + 54248 28095 33901 33919 62505 62505 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.089274 5.0202E-05 -0.84017 -0.00047246 -0.7509 -0.00042226 562.334354917895 25.735 0.029167 25.735 25.712 25.741 0 4 2 2 0 0 0 0.49026 1 3576 3576 1.6526 0.32309 1 94664 + 54249 28095 33901 33919 62506 62506 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3346557617188 2 562.334759 1122.65496 0.10456 5.8798E-05 -0.2211 -0.00012433 -0.11654 -6.5534E-05 562.3345491232315 26.402 0.0928 26.402 26.374 26.466 0 16 8 3 0 0 0 0.49026 1 3773 3773 1.6526 0.32309 1 229280 + 54250 28095 33901 33919 62507 62507 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.12034 6.767E-05 0.14919 8.3895E-05 0.26953 0.00015157 562.8363358800104 27.053 0.33661 27.053 26.94 27.277 0 53 27 3 0 0 0 0.49026 1 3974 3974 1.6526 0.32309 1 1128700 + 54251 28095 33901 33919 62508 62508 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3345947265625 2 562.334759 1122.65496 0.15223 8.5605E-05 -0.093798 -5.2746E-05 0.058434 3.2859E-05 562.3346844473051 28.527 0.33382 28.527 28.481 28.814 0 41 23 3 0 0 0 0.49026 1 4426 4426 1.6526 0.32309 1 2494000 + 54252 28095 33901 33919 62509 62509 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348999023438 2 562.334759 1122.65496 0.20896 0.00011751 0.058736 3.303E-05 0.2677 0.00015054 562.3346282486011 31.124 0.070774 31.124 31.07 31.141 0 11 5 3 0 0 0 0.49026 1 5156 5156 1.6526 0.32309 1 356560 + 54253 28095 33901 33919 62510 62510 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.334716796875 2 562.334759 1122.65496 0.26361 0.00014824 -0.036401 -2.0469E-05 0.22721 0.00012777 562.3347001726077 33.608 0.08493 33.608 33.595 33.68 0 8 5 2 0 0 0 0.49026 1 5919 5919 1.6526 0.32309 1 515020 + 54254 28095 33901 33919 62511 62511 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.4452 0.00025035 0.20305 0.00011418 0.64825 0.00036454 562.3345963792227 109.69 0.56599 109.69 109.56 110.13 0 129 46 3 0 0 0 0.46869 1 26940 26940 3.9444 0.3479 1 8916000 + 54255 28095 33901 33919 62512 62512 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.334759 1122.65496 0.44505 0.00025027 0.051743 2.9097E-05 0.4968 0.00027937 562.3346045071193 110.2 0.27576 110.2 110.11 110.39 0 66 25 3 0 0 0 0.49026 1 27181 27181 1.6526 0.17072 1 3929700 + 54256 28095 33901 33919 62513 62513 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 562.33447265625 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 34.239 1 34.239 33.739 34.739 0 0 0 0 0.39598 1 6089 6089 1.6526 0.17072 1 + 54257 28095 33901 33919 62514 62514 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.3345947265625 2 562.334759 1122.65496 0.50613 0.00028462 -0.23229 -0.00013062 0.27385 0.00015399 562.33431414426 110.48 0.1964 114.06 114.02 114.21 3.5835 47 24 3 0 0 0 0.49026 1 27246 27246 1.6526 0.32309 1 222350 + 54258 28095 33901 33919 62515 62515 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MSMS UPN47_class_I_Rep_3 4 562.3345336914062 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 110.61 1 114.14 113.64 114.64 3.529 0 0 0 0.39598 1 27142 27142 1.6526 0.17072 1 + 54259 28095 33901 33919 62516 62516 0.09854301502286944 WLTRPLPQI 9 Unmodified _WLTRPLPQI_ 0 0 0 REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense REV__L1ME3C_dup1945|chrX:107084900-107085246:-|1.0267428236043694|0.0397737289382127|4.69|151.0|10|3|sense MSMS UPN48_class_I_Rep_3 7 562.3346557617188 2 562.334759 1122.65496 NaN NaN NaN NaN NaN NaN NaN 109.62 1 113.29 112.79 113.79 3.67 0 0 0 0.38639 1 26037 26037 3.9444 0.3479 1 + 54260 28095 33901 33919 62517 62517 0.09854301502286944 WLVAGVGF 8 Unmodified _WLVAGVGF_ 0 0 0 REV__MER20_dup5582|chr6:4948544-4948748:+|1.049266990824102|0.2536571530546504|2.05|151.0|8|1|anti-sense REV__MER20_dup5582|chr6:4948544-4948748:+|1.049266990824102|0.2536571530546504|2.05|151.0|8|1|anti-sense MSMS UPN46_class_I_Rep_3 1 424.7505187988281 2 424.736889 847.459225 NaN NaN NaN NaN NaN NaN NaN 39.112 1 39.112 38.612 39.612 0 0 0 0 0.40581 1 7496 7496 2.8892 0 1 + 54261 31157 33902 33920 62518 62518 0.029393360482458775 WLVELPTK 8 Unmodified _WLVELPTK_ 0 0 0 REV__L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense REV__L1MB3_dup15057|chr17:72715241-72715671:+|1.17219142652428|0.0200696615343404|5.87|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 493.2913818359375 2 493.289485 984.564418 NaN NaN NaN NaN NaN NaN NaN 38.844 1 38.844 38.344 39.344 0 0 0 0 0.40364 1 7426 7426 5.7604 0.52976 1 + 54262 25833 33903 33921 62519 62519 0.07151832453985207 WLVEVQVS 8 Unmodified _WLVEVQVS_ 0 0 0 ENSG00000147082|ENST00000376042|CCNB3 ENSG00000147082|ENST00000376042|CCNB3 ENSG00000147082|ENST00000376042|CCNB3 MSMS UPN46_class_I_Rep_3 1 480.2798156738281 2 480.263468 958.512382 NaN NaN NaN NaN NaN NaN NaN 49.516 1 49.516 49.016 50.016 0 0 0 0 0.40604 1 10399 10399 2.5775 0 1 54263 3459 33904 33922 62520 62520 0.03146669040245342 WLVGYHTR 8 Unmodified _WLVGYHTR_ 0 0 0 REV__L1ME3A_dup14122|chr18:12715807-12716208:-|1.2761479578494606|0.2096309759243498|2.61|151.0|2|1|sense REV__L1ME3A_dup14122|chr18:12715807-12716208:-|1.2761479578494606|0.2096309759243498|2.61|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 516.2742309570312 2 516.274701 1030.53485 NaN NaN NaN NaN NaN NaN NaN 30.895 1 34.437 33.937 34.937 3.542 0 0 0 0.40738 1 4500 4500 0.79363 0 1 + 54264 28002 33905 33923 62521 62521 0.020803132284981984 WLVLFFHAL 9 Unmodified _WLVLFFHAL_ 0 0 0 REV__L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|48|2|anti-sense REV__L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_1 5 573.329345703125 2 573.328945 1144.64334 NaN NaN NaN NaN NaN NaN NaN 38.751 1 42.256 41.756 42.756 3.5048 0 0 0 0.40038 1 6754 6754 0.6015 0 1 + 54265 26503 33906 33924 62522 62522 0.07680104478959038 WLVLRLLHLF 10 Unmodified _WLVLRLLHLF_ 0 0 0 REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|220|1|anti-sense REV__L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|220|1|anti-sense MSMS UPN48_class_I_Rep_2 6 437.2677917480469 3 437.276293 1308.80705 NaN NaN NaN NaN NaN NaN NaN 49.471 1 53.166 52.666 53.666 3.6946 0 0 0 0.53105 1 9999 9999 1.9064 0.31409 1 + 54266 30374 33907 33925 62523 62523 0.1649970224984827 WLVLWPSRVL 10 Unmodified _WLVLWPSRVL_ 0 0 0 REV__ENST00000264039.6_1_2:241407109-241407217:+|nuORF REV__ENST00000264039.6_1_2:241407109-241407217:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 634.37744140625 2 634.879333 1267.74411 0.43235 0.00027449 -0.42351 -0.00026887 0.008843 5.6142E-06 635.3814168388847 106.32 0.021835 109.94 109.93 109.96 3.6277 4 2 2 0 0 0 0.84575 1 25621 25621 0.45834 0 1 67104 + 54267 21578 33908 33926 62524 62524 0.1209513646178948 WLVLWPSRVL 10 Unmodified _WLVLWPSRVL_ 0 0 0 REV__ENST00000264039.6_1_2:241407109-241407217:+|nuORF REV__ENST00000264039.6_1_2:241407109-241407217:+|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 2 634.879333 1267.74411 0.56714 0.00036007 -1.3921 -0.00088384 -0.82499 -0.00052377 634.878061860686 106.07 0.087364 109.78 109.74 109.82 3.7088 -0.083022 -0.00011501 NaN 0.45834 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 560650 + 54268 21578 33908 33926 0.1209513646178948 WLVPVKMG 8 Unmodified _WLVPVKMG_ 0 0 0 REV__MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|33|3|sense REV__MER21C_dup3339|chr10:63320645-63321596:+|1.783579992156364|0.0192967659706907|6.53|151.0|33|3|sense MSMS UPN46_class_I_Rep_3 1 465.3368835449219 2 465.267499 928.520445 NaN NaN NaN NaN NaN NaN NaN 49.049 1 49.049 48.549 49.549 0 0 0 0 0.40738 1 10270 10270 0.79363 0 1 + 54269 31232 33909 33927 62525 62525 0.05332524756022394 WLVVIMATV 9 Unmodified _WLVVIMATV_ 0 0 0 ENST00000461117.1_1_22:51015219-51015874:-|nuORF;nc|ENSG00000205560|Q92523-2|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B ENST00000461117.1_1_22:51015219-51015874:-|nuORF ENST00000461117.1_1_22:51015219-51015874:-|nuORF MSMS UPN47_class_I_Rep_1 2 516.302001953125 2 516.301539 1030.58852 NaN NaN NaN NaN NaN NaN NaN 50.057 1 53.685 53.185 54.185 3.6285 0 0 0 0.40038 1 10944 10944 0.6015 0 1 54270 5562 33910 33928 62526 62526 0.07445349616000385 WLVVPAWR 8 Unmodified _WLVVPAWR_ 0 0 0 REV__ENSG00000179284|ENST00000317060|DAND5 REV__ENSG00000179284|ENST00000317060|DAND5 MSMS UPN47_class_I_Rep_1 2 513.7967529296875 2 513.797812 1025.58107 NaN NaN NaN NaN NaN NaN NaN 95.545 1 99.31 98.81 99.81 3.7648 0 0 0 0.40738 1 23716 23716 0.79363 0 1 + 54271 20675 33911 33929 62527 62527 0.06930378130596182 WLVWILGNLV 10 Unmodified _WLVWILGNLV_ 0 0 0 PRIMA4-int_dup133|chr5:150703466-150704175:-|1.321149491843026|0.4689933853998878|1.49|151.0|15|2|sense PRIMA4-int_dup133|chr5:150703466-150704175:-|1.321149491843026|0.4689933853998878|1.49|151.0|15|2|sense PRIMA4-int_dup133|chr5:150703466-150704175:-|1.321149491843026|0.4689933853998878|1.49|151.0|15|2|sense MSMS UPN46_class_I_Rep_3 1 606.8613891601562 2 606.860609 1211.70667 NaN NaN NaN NaN NaN NaN NaN 43.495 1 43.495 42.995 43.995 0 0 0 0 0.53105 1 8689 8689 1.8442 0.19162 1 54272 16888 33912 33930 62528 62528 0.10928045196192215 WLVYKSYSS 9 Unmodified _WLVYKSYSS_ 0 0 0 REV__L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|82|3|sense REV__L1MEc_dup18016|chr21:37440436-37442591:-|2.845182332254535|0.0300668763119093|6.56|151.0|82|3|sense MSMS UPN47_class_I_Rep_1 2 567.229248046875 2 566.787307 1131.56006 NaN NaN NaN NaN NaN NaN NaN 115.09 1 118.68 118.18 119.18 3.5809 0 0 0 0.4007 1 28463 28463 0.52476 0 1 + 54273 28417 33913 33931 62529 62529 -0.0004567675957787287 WLWEESHW 8 Unmodified _WLWEESHW_ 0 0 0 L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|201|1|anti-sense L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|201|1|anti-sense L1M1_dup8029|chr13:111257502-111262337:+|3.1983860291365134|0.1716438199784758|4.22|151.0|201|1|anti-sense MSMS UPN47_class_I_Rep_1 2 586.762451171875 2 586.761623 1171.50869 NaN NaN NaN NaN NaN NaN NaN 20.292 1 23.904 23.404 24.404 3.6118 0 0 0 0.40738 1 2009 2009 0.79363 0 1 54274 8622 33914 33932 62530 62530 -0.07020000733609777 WLWGWAGL 8 Unmodified _WLWGWAGL_ 0 0 0 REV__ENST00000495882.1_1_7:99764639-99764801:-|nuORF REV__ENST00000495882.1_1_7:99764639-99764801:-|nuORF MSMS UPN47_class_I_Rep_2 3 494.7565002441406 2 494.755613 987.496673 NaN NaN NaN NaN NaN NaN NaN 26.453 1 29.947 29.447 30.447 3.4945 0 0 0 0.4032 1 3829 3829 6.3541 0 1 + 54275 22655 33915 33933 62531 62531 0.0024242731385584193 WLWHKKIL 8 Unmodified _WLWHKKIL_ 0 0 0 REV__ENSG00000164975|ENST00000380821|SNAPC3 REV__ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS UPN46_class_I_Rep_3 1 562.846435546875 2 562.342387 1122.67022 0.44498 0.00025023 1.8131 0.0010196 2.2581 0.0012698 562.3432874879289 85.668 0.18416 85.668 85.606 85.791 0 22 16 3 0 0 0 0.82752 1 20444 20444 0.79363 0 1 245720 + 54276 20097 33916 33934 62532 62532 0.11379213090117446 WLWHKKIL 8 Unmodified _WLWHKKIL_ 0 0 0 REV__ENSG00000164975|ENST00000380821|SNAPC3 REV__ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MATCH UPN47_class_I_Rep_1 2 2 562.342387 1122.67022 0.43593 0.00024514 0.60496 0.00034019 1.0409 0.00058534 562.3430283656882 82.529 0.052078 86.041 86.006 86.058 3.5122 0.21297 -0.0014 NaN 0.79363 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 25188 + 54277 20097 33916 33934 0.11379213090117446 WLWHKKIL 8 Unmodified _WLWHKKIL_ 0 0 0 REV__ENSG00000164975|ENST00000380821|SNAPC3 REV__ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 562.342387 1122.67022 0.45913 0.00025819 2.0386 0.0011464 2.4977 0.0014046 562.3434214190984 82.022 0.086319 85.707 85.652 85.738 3.685 -0.12172 0.00021241 NaN 0.79363 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 80955 + 54278 20097 33916 33934 0.11379213090117446 WLWICHKK 8 Unmodified _WLWICHKK_ 0 0 0 L1PA5_dup4307|chr6:49473415-49477579:+|1.3321493655660486|0.2407611955267065|2.47|151.0|150|1|anti-sense L1PA5_dup4307|chr6:49473415-49477579:+|1.3321493655660486|0.2407611955267065|2.47|151.0|150|1|anti-sense L1PA5_dup4307|chr6:49473415-49477579:+|1.3321493655660486|0.2407611955267065|2.47|151.0|150|1|anti-sense MSMS UPN48_class_I_Rep_1 5 557.3064575195312 2 557.304947 1112.59534 NaN NaN NaN NaN NaN NaN NaN 34.897 1 38.411 37.911 38.911 3.5144 0 0 0 0.40738 1 5640 5640 0.79363 0.19213 1 54279 14472 33917 33935 62533 62533 0.04354707287234305 WLWLFLKIRQQ 11 Unmodified _WLWLFLKIRQQ_ 0 0 0 Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|91|2|anti-sense Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|91|2|anti-sense Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|91|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.9686584472656 3 510.96964 1529.88709 0.32059 0.00016381 -1.6023 -0.00081875 -1.2818 -0.00065494 510.9685014136629 97.78 0.20204 101.56 101.52 101.72 3.779 34 27 2 0 0 0 0.68478 1 23228 23228 0.094841 0 1 113250 54280 33072 33918 33936 62534 62534 0.14334143853011483 WLWLFLKIRQQ 11 Unmodified _WLWLFLKIRQQ_ 0 0 0 Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|91|2|anti-sense Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|91|2|anti-sense Tigger1_dup3011|chr4:40221337-40223473:+|4.882858239958449|0.0375200750446042|7.02|151.0|91|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.96942138671875 3 510.96964 1529.88709 0.29036 0.00014836 -1.6286 -0.00083214 -1.3382 -0.00068378 510.9686061540584 97.893 0.17297 101.79 101.74 101.91 3.9022 30 21 2 0 0 0 0.68478 1 23210 23210 0.094841 0 1 202600 54281 33072 33918 33936 62535 62535 0.14334143853011483 WLWLWLHG 8 Unmodified _WLWLWLHG_ 0 0 0 ENST00000491383.5_1_2:86716620-86718467:+|nuORF ENST00000491383.5_1_2:86716620-86718467:+|nuORF ENST00000491383.5_1_2:86716620-86718467:+|nuORF MSMS UPN48_class_I_Rep_1 5 555.79736328125 2 555.797812 1109.58107 NaN NaN NaN NaN NaN NaN NaN 20.458 1 24.003 23.503 24.503 3.5454 0 0 0 0.40738 1 1726 1726 0.79363 0 1 54282 7073 33919 33937 62536 62536 0.030663781305975135 WLWQFLKKK 9 Unmodified _WLWQFLKKK_ 0 0 0 Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense MSMS UPN47_class_I_Rep_3 4 638.8814086914062 2 638.881876 1275.7492 NaN NaN NaN NaN NaN NaN NaN 98.113 1 101.53 101.03 102.03 3.4216 0 0 0 0.4007 1 24301 24301 0.52476 0.12405 1 54283 33078 33920 33938 62537 62537 0.12235440324411684 WLWQFLKKK 9 Unmodified _WLWQFLKKK_ 0 0 0 Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense MSMS UPN48_class_I_Rep_2 6 638.8817749023438 2 638.881876 1275.7492 NaN NaN NaN NaN NaN NaN NaN 97.501 1 101.28 100.78 101.78 3.779 0 0 0 0.4007 1 23167 23167 0.52476 0.12405 1 54284 33078 33920 33938 62538 62538 0.12235440324411684 WLWRIKLL 8 Unmodified _WLWRIKLL_ 0 0 0 REV__L1PREC2_dup5787|chr12:9187011-9190530:+|1.4630518329759543|0.0811721165215578|4.17|151.0|215|3|anti-sense REV__L1PREC2_dup5787|chr12:9187011-9190530:+|1.4630518329759543|0.0811721165215578|4.17|151.0|215|3|anti-sense MSMS UPN46_class_I_Rep_3 1 564.3580932617188 2 564.358037 1126.70152 NaN NaN NaN NaN NaN NaN NaN 74.963 1 74.963 74.463 75.463 0 0 0 0 0.40746 1 17403 17403 0.69038 0 1 + 54285 30732 33921 33939 62539 62539 0.14323786124214166 WLWSYEED 8 Unmodified _WLWSYEED_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MSMS UPN47_class_I_Rep_1 2 564.2742919921875 2 564.237647 1126.46074 NaN NaN NaN NaN NaN NaN NaN 116.64 1 120.25 119.75 120.75 3.6036 0 0 0 0.40746 1 28894 28894 0.69038 0 1 54286 5455 33922 33940 62540 62540 -0.0974311944432884 WLYCYTRK 8 Unmodified _WLYCYTRK_ 0 0 0 REV__L1ME3F_dup44|chr1:15965133-15966075:+|1.05418454633119|0.0875773420975675|3.59|151.0|37|1|anti-sense REV__L1ME3F_dup44|chr1:15965133-15966075:+|1.05418454633119|0.0875773420975675|3.59|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_2 6 566.7860107421875 2 566.784044 1131.55354 NaN NaN NaN NaN NaN NaN NaN 29.663 1 33.294 32.794 33.794 3.6316 0 0 0 0.40738 1 4244 4244 0.79363 0.10326 1 + 54287 28178 33923 33941 62541 62541 -0.006978931919547904 WLYFKINFI 9 Unmodified _WLYFKINFI_ 0 0 0 L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|79|3|sense L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|79|3|sense L1MEc_dup3991|chr3:121803351-121806197:-|5.866493840967698|0.2303832727455387|4.67|151.0|79|3|sense MSMS UPN48_class_I_Rep_3 7 622.3480224609375 2 622.347335 1242.68012 NaN NaN NaN NaN NaN NaN NaN 106.58 1 110.27 109.77 110.77 3.6899 0 0 0 0.4007 1 25130 25130 0.52476 0 1 54288 13099 33924 33942 62542 62542 0.06848356304863046 WLYHYFSF 8 Unmodified _WLYHYFSF_ 0 0 0 REV__L1M5_dup30213|chr9:129953524-129953922:+|1.5924026157209072|0.094801997519173|4.07|151.0|26|3|anti-sense REV__L1M5_dup30213|chr9:129953524-129953922:+|1.5924026157209072|0.094801997519173|4.07|151.0|26|3|anti-sense MSMS UPN47_class_I_Rep_3 4 581.772216796875 2 581.77146 1161.52837 NaN NaN NaN NaN NaN NaN NaN 82.919 1 86.256 85.756 86.756 3.337 0 0 0 0.40604 1 20789 20789 2.5775 0.73324 1 + 54289 24648 33925 33943 62543 62543 -0.0459362472288376 WLYIVKKKK 9 Unmodified _WLYIVKKKK_ 0 0 0 REV__L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|2|1|sense REV__L1MEg_dup8269|chr9:120621105-120622507:-|1.3648642346477668|0.0505588200024169|4.75|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 603.3939819335938 2 603.392077 1204.7696 NaN NaN NaN NaN NaN NaN NaN 78.467 1 82.089 81.589 82.589 3.6222 0 0 0 0.40038 1 18614 18614 0.6015 0.076735 1 + 54290 28783 33926 33944 62544 62544 0.17540610984224259 WLYKYFAF 8 Unmodified _WLYKYFAF_ 0 0 0 REV__L1MEc_dup11655|chr10:21570375-21571654:-|1.5199870202914836|0.0089192892935365|7.41|151.0|69|2|anti-sense REV__L1MEc_dup11655|chr10:21570375-21571654:-|1.5199870202914836|0.0089192892935365|7.41|151.0|69|2|anti-sense MSMS UPN48_class_I_Rep_1 5 569.2910766601562 2 569.292028 1136.5695 NaN NaN NaN NaN NaN NaN NaN 34.529 1 38.044 37.544 38.544 3.5144 0 0 0 0.40738 1 5535 5535 0.79363 0 1 + 54291 28359 33927 33945 62545 62545 0.006681363165853327 WLYLQQTF 8 Unmodified _WLYLQQTF_ 0 0 0 L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|89|2|anti-sense L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|89|2|anti-sense L1MB7_dup21320|chr19:30025278-30027064:-|1.0488126694311486|0.0624929933605919|4.07|150.0|89|2|anti-sense MSMS UPN46_class_I_Rep_3 1 549.7862548828125 2 549.784567 1097.55458 NaN NaN NaN NaN NaN NaN NaN 88.048 1 88.048 87.548 88.548 0 0 0 0 0.39996 1 21125 21125 7.9102 0 1 54292 10795 33928 33946 62546 62546 0.009706444486027976 WLYSQSPQSVN 11 Unmodified _WLYSQSPQSVN_ 0 0 0 L1ME1_dup13552|chr7:74233765-74234468:+|1.3119133023650638|0.1976288346680996|2.73|151.0|2|1|sense L1ME1_dup13552|chr7:74233765-74234468:+|1.3119133023650638|0.1976288346680996|2.73|151.0|2|1|sense L1ME1_dup13552|chr7:74233765-74234468:+|1.3119133023650638|0.1976288346680996|2.73|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 436.8797302246094 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 86.136 1 89.752 89.252 90.252 3.6153 0 0 0 0.38417 1 21514 21514 0.50596 0 1 54293 12216 33929 33947 62547 62547 -0.026887096787959308 WLYTRNRR 8 Unmodified _WLYTRNRR_ 0 0 0 MLT1A0_dup19930|chr21:6346824-6347130:+|1.4731955048052905|0.2615376055490652|2.49|150.0|11|3|sense MLT1A0_dup19930|chr21:6346824-6347130:+|1.4731955048052905|0.2615376055490652|2.49|150.0|11|3|sense MLT1A0_dup19930|chr21:6346824-6347130:+|1.4731955048052905|0.2615376055490652|2.49|150.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 582.8243408203125 2 582.822881 1163.63121 NaN NaN NaN NaN NaN NaN NaN 113.51 1 117 116.5 117.5 3.4963 0 0 0 0.40746 1 27844 27844 0.69038 0.088878 1 54294 16253 33930 33948 62548 62548 0.05593880788455863 WLYVLPRY 8 Unmodified _WLYVLPRY_ 0 0 0 REV__L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|79|3|anti-sense REV__L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|79|3|anti-sense MSMS UPN46_class_I_Rep_3 1 555.312255859375 2 555.310752 1108.60695 NaN NaN NaN NaN NaN NaN NaN 48.673 1 48.673 48.173 49.173 0 0 0 0 0.40604 1 10161 10161 2.5775 0.27475 1 + 54295 25998 33931 33949 62549 62549 0.0569922758222674 WLYWDDFRTYN 11 Unmodified _WLYWDDFRTYN_ 0 0 0 REV__nc|ENSG00000088298|Q9BV94-2|EDEM2 REV__nc|ENSG00000088298|Q9BV94-2|EDEM2 MULTI-MSMS UPN48_class_I_Rep_1 5 527.240966796875 3 526.905253 1577.69393 0.37613 0.00019818 1.2789 0.00067384 1.655 0.00087203 526.9059646698067 29.169 0.46492 32.719 32.546 33.011 3.5499 75 48 2 0 0 0 0.68132 1 4086 4086 0.40827 0.31342 1 183550 + 54296 17987 33932 33950 62550 62550 -0.07181062724680487 WMALLLYL 8 Unmodified _WMALLLYL_ 0 0 0 MLT1H1_dup3162|chr17:21308912-21309326:-|2.2819962277081025|0.4699011303066818|2.28|151.0|24|3|anti-sense MLT1H1_dup3162|chr17:21308912-21309326:-|2.2819962277081025|0.4699011303066818|2.28|151.0|24|3|anti-sense MLT1H1_dup3162|chr17:21308912-21309326:-|2.2819962277081025|0.4699011303066818|2.28|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_2 6 511.79119873046875 2 511.790807 1021.56706 NaN NaN NaN NaN NaN NaN NaN 26.381 1 30.014 29.514 30.514 3.6332 0 0 0 0.40581 1 3350 3350 2.8892 0 1 54297 16441 33933 33951 62551 62551 0.05713964587289411 WMCCPLYL 8 Unmodified _WMCCPLYL_ 0 0 0 L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|80|2|anti-sense L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|80|2|anti-sense L1MEf_dup8274|chr12:1298573-1299998:+|5.042368603034368|0.0799248861003268|5.98|151.0|80|2|anti-sense MSMS UPN48_class_I_Rep_3 7 514.7227172851562 2 514.723752 1027.43295 NaN NaN NaN NaN NaN NaN NaN 113.64 1 117.3 116.8 117.8 3.6568 0 0 0 0.40738 1 27028 27028 0.79363 0 1 54298 13325 33934 33952 62552 62552 -0.07966760501426506 WMCFKFKQ 8 Unmodified _WMCFKFKQ_ 0 0 0 REV__MER33_dup3888|chr7:17341564-17341867:+|1.0850597085404423|0.4835517255874975|1.17|147.0|9|2|sense REV__MER33_dup3888|chr7:17341564-17341867:+|1.0850597085404423|0.4835517255874975|1.17|147.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.77001953125 2 559.269716 1116.52488 0.29634 0.00016573 -1.4778 -0.00082647 -1.1814 -0.00066074 559.2690002555347 19.479 0.22674 23.101 23.02 23.246 3.6215 25 24 2 0 0 0 0.82752 1 1471 1471 0.79363 0 1 31122 + 54299 31260 33935 33953 62553 62553 -0.028723340927399477 WMEAFIFY 8 Unmodified _WMEAFIFY_ 0 0 0 REV__AluJo_dup12424|chr3:9466743-9467032:+|2.1723919986798674|0.3844487240405326|2.5|151.0|18|1|anti-sense REV__AluJo_dup12424|chr3:9466743-9467032:+|2.1723919986798674|0.3844487240405326|2.5|151.0|18|1|anti-sense MSMS UPN47_class_I_Rep_3 4 553.7559204101562 2 553.754421 1105.49429 NaN NaN NaN NaN NaN NaN NaN 86.687 1 90.067 89.567 90.567 3.3801 0 0 0 0.33253 1 21727 21727 26.341 0 1 + 54300 16982 33936 33954 62554 62554 -0.054237892061337334 WMESMWCM 8 Unmodified _WMESMWCM_ 0 0 0 ENST00000389600.6_1_13:51590304-51594849:-|nuORF;nc|ENSG00000293412|O75343|GUCY1B2 ENST00000389600.6_1_13:51590304-51594849:-|nuORF ENST00000389600.6_1_13:51590304-51594849:-|nuORF MSMS UPN47_class_I_Rep_1 2 552.2152709960938 2 552.194502 1102.37445 NaN NaN NaN NaN NaN NaN NaN 115.23 1 118.81 118.31 119.31 3.5809 0 0 0 0.40738 1 28501 28501 0.79363 0.19213 1 54301 6511 33937 33955 62555 62555 -0.17264185138196808 WMESMWCM 8 Unmodified _WMESMWCM_ 0 0 0 ENST00000389600.6_1_13:51590304-51594849:-|nuORF;nc|ENSG00000293412|O75343|GUCY1B2 ENST00000389600.6_1_13:51590304-51594849:-|nuORF ENST00000389600.6_1_13:51590304-51594849:-|nuORF MSMS UPN47_class_I_Rep_2 3 552.2150268554688 2 552.194502 1102.37445 NaN NaN NaN NaN NaN NaN NaN 117.69 1 121.18 120.68 121.68 3.4891 0 0 0 0.40738 1 28775 28775 0.79363 0.10326 1 54302 6511 33937 33955 62556 62556 -0.17264185138196808 WMEYGDFVR 9 Unmodified _WMEYGDFVR_ 0 0 0 ENSG00000103326|ENST00000219611|CAPN15 ENSG00000103326|ENST00000219611|CAPN15 ENSG00000103326|ENST00000219611|CAPN15 MSMS UPN48_class_I_Rep_1 5 601.768798828125 2 601.768591 1201.52263 NaN NaN NaN NaN NaN NaN NaN 40.251 1 43.756 43.256 44.256 3.5048 0 0 0 0.39518 1 7203 7203 1.8442 0 1 54303 1654 33938 33956 62557 62557 -0.07007091296850376 WMFDWEME 8 Unmodified _WMFDWEME_ 0 0 0 REV__ENSG00000146250|ENST00000369700|PRSS35 REV__ENSG00000146250|ENST00000369700|PRSS35 MSMS UPN47_class_I_Rep_1 2 587.1909790039062 2 587.222628 1172.4307 NaN NaN NaN NaN NaN NaN NaN 117.9 1 121.5 121 122 3.6036 0 0 0 0.40738 1 29240 29240 0.79363 0 1 + 54304 19537 33939 33957 62558 62558 -0.14861517705548977 WMFRLMLF 8 Unmodified _WMFRLMLF_ 0 0 0 L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|180|3|anti-sense L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|180|3|anti-sense L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|180|3|anti-sense MSMS UPN46_class_I_Rep_3 1 572.29443359375 2 572.295733 1142.57691 NaN NaN NaN NaN NaN NaN NaN 101.02 1 101.02 100.52 101.52 0 0 0 0 0.40746 1 24640 24640 0.69038 0 1 54305 8894 33940 33958 62559 62559 0.011328293210226548 WMISNRAN 8 Unmodified _WMISNRAN_ 0 0 0 ENST00000590781.1_1_19:12831693-12834404:-|nuORF ENST00000590781.1_1_19:12831693-12834404:-|nuORF ENST00000590781.1_1_19:12831693-12834404:-|nuORF MSMS UPN47_class_I_Rep_2 3 496.2415771484375 2 496.242544 990.470534 NaN NaN NaN NaN NaN NaN NaN 57.578 1 60.869 60.369 61.369 3.2912 0 0 0 0.40738 1 13268 13268 0.79363 0 1 54306 7616 33941 33959 62560 62560 -0.025082099199494223 WMKHIYYA 8 Unmodified _WMKHIYYA_ 0 0 0 REV__ENST00000443967.5_1_5:175717389-175717593:+|nuORF REV__ENST00000443967.5_1_5:175717389-175717593:+|nuORF MSMS UPN47_class_I_Rep_3 4 556.2720947265625 2 556.273312 1110.53207 NaN NaN NaN NaN NaN NaN NaN 58.76 1 61.926 61.426 62.426 3.1658 0 0 0 0.40738 1 13678 13678 0.79363 0 1 + 54307 22343 33942 33960 62561 62561 -0.01877278220649714 WMKKMWDMISP 11 Unmodified _WMKKMWDMISP_ 0 0 0 REV__L1PA16_dup12167|chr15:50033562-50034188:-|3.543142169480696|0.0032462499383579|10.09|151.0|1|1|sense REV__L1PA16_dup12167|chr15:50033562-50034188:-|3.543142169480696|0.0032462499383579|10.09|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 484.7877502441406 3 484.8994 1451.67637 NaN NaN NaN NaN NaN NaN NaN 39.884 1 43.122 42.622 43.622 3.2372 0 0 0 0.38417 1 7930 7930 0.094841 0 1 + 54308 29343 33943 33961 62562 62562 -0.031401408471765535 WMKKMWYG 8 Unmodified _WMKKMWYG_ 0 0 0 L1MA6_dup4746|chr15:68117386-68118044:-|3.305259044304017|0.0769626848494149|5.42|151.0|22|3|sense L1MA6_dup4746|chr15:68117386-68118044:-|3.305259044304017|0.0769626848494149|5.42|151.0|22|3|sense L1MA6_dup4746|chr15:68117386-68118044:-|3.305259044304017|0.0769626848494149|5.42|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 565.2702026367188 2 565.269716 1128.52488 NaN NaN NaN NaN NaN NaN NaN 51.33 1 54.668 54.168 55.168 3.3386 0 0 0 0.40738 1 11361 11361 0.79363 0 1 54309 9991 33944 33962 62563 62563 -0.03424334092733261 WMKLHNFF 8 Unmodified _WMKLHNFF_ 0 0 0 REV__MER58B_dup2416|chr6:37873728-37873970:-|1.1820811242806024|0.0108989238864459|6.76|151.0|21|2|anti-sense REV__MER58B_dup2416|chr6:37873728-37873970:-|1.1820811242806024|0.0108989238864459|6.76|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.7805786132812 2 561.781305 1121.54806 NaN NaN NaN NaN NaN NaN NaN 84.555 1 88.304 87.804 88.804 3.7494 0 0 0 0.40404 1 20063 20063 5.2307 0 1 + 54310 31465 33945 33963 62564 62564 -0.007855719837607467 WMKLLLIF 8 Unmodified _WMKLLLIF_ 0 0 0 REV__L1MD1_dup4789|chr11:78409611-78410203:+|2.26280372129386|0.0126297746564046|7.49|151.0|44|3|anti-sense REV__L1MD1_dup4789|chr11:78409611-78410203:+|2.26280372129386|0.0126297746564046|7.49|151.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 532.3218994140625 2 532.322274 1062.63 NaN NaN NaN NaN NaN NaN NaN 78.796 1 78.796 78.296 79.296 0 0 0 0 0.40581 1 18475 18475 2.8892 0 1 + 54311 27352 33946 33964 62565 62565 0.101185303753482 WMKLYIKLL 9 Unmodified _WMKLYIKLL_ 0 0 0 REV__THE1A-int_dup681|chr7:32521164-32522729:+|2.946154174676851|0.0833048587617001|5.14|151.0|1|1|sense REV__THE1A-int_dup681|chr7:32521164-32522729:+|2.946154174676851|0.0833048587617001|5.14|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 604.3671875 2 604.367213 1206.71987 NaN NaN NaN NaN NaN NaN NaN 100.41 1 100.41 99.906 100.91 0 0 0 0 0.4029 1 24472 24472 0 0 1 + 54312 32219 33947 33965 62566 62566 0.12478159983902515 WMKRREKER 9 Unmodified _WMKRREKER_ 0 0 0 nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4 nc|ENSG00000179242|P55283-2|CDH4 nc|ENSG00000179242|P55283-2|CDH4 MULTI-SECPEP UPN48_class_I_Rep_1 5 439.5751037597656 3 440.243546 1317.70881 0.0030898 1.3602E-06 0.5213 0.0002295 0.52439 0.00023086 440.2438771110736 37.848 0.097332 41.354 41.333 41.43 3.5052 11 9 2 0 0 0 0.12509 1 6504 6504 1.1933 0.41681 1 93035 54313 4855 33948 33966 62567 62567 0.06266150662304426 WMKTIRFL 8 Unmodified _WMKTIRFL_ 0 0 0 REV__L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|3|1|sense REV__L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 547.816650390625 2 547.812605 1093.61066 NaN NaN NaN NaN NaN NaN NaN 19.308 1 22.846 22.346 23.346 3.5378 0 0 0 0.40753 1 1442 1442 0.6015 0 1 + 54314 25664 33949 33967 62568 62568 0.06759574084458109 WMKTIRFL 8 Unmodified _WMKTIRFL_ 0 0 0 REV__L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|3|1|sense REV__L1MB1_dup3954|chr10:63498709-63499409:-|1.1083981677439356|0.0149289915862897|6.21|150.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 547.738525390625 2 547.812605 1093.61066 NaN NaN NaN NaN NaN NaN NaN 17.375 1 21.027 20.527 21.527 3.6518 0 0 0 0.40753 1 1003 1003 0.6015 0 1 + 54315 25664 33949 33967 62569 62569 0.06759574084458109 WMLKFKKL 8 Unmodified _WMLKFKKL_ 0 0 0 L1MC4a_dup8574|chr16:29239404-29241060:-|1.7401585334142755|0.0742633444627785|4.55|151.0|86|2|anti-sense L1MC4a_dup8574|chr16:29239404-29241060:-|1.7401585334142755|0.0742633444627785|4.55|151.0|86|2|anti-sense L1MC4a_dup8574|chr16:29239404-29241060:-|1.7401585334142755|0.0742633444627785|4.55|151.0|86|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.3335571289062 2 547.333173 1092.65179 NaN NaN NaN NaN NaN NaN NaN 75.418 1 78.821 78.321 79.321 3.4034 0 0 0 0.40738 1 18615 18615 0.79363 0 1 54316 11626 33950 33968 62570 62570 0.109173351238951 WMLLFMCY 8 Unmodified _WMLLFMCY_ 0 0 0 REV__L1MA5_dup2506|chr9:120630148-120631487:-|2.0017109842214915|0.0543659958764462|5.2|151.0|25|2|sense REV__L1MA5_dup2506|chr9:120630148-120631487:-|2.0017109842214915|0.0543659958764462|5.2|151.0|25|2|sense MSMS UPN48_class_I_Rep_2 6 553.3032836914062 2 553.747227 1105.4799 NaN NaN NaN NaN NaN NaN NaN 26.117 1 29.75 29.25 30.25 3.6332 0 0 0 0.40738 1 3281 3281 0.79363 0.10326 1 + 54317 25375 33951 33969 62571 62571 -0.06861900950275412 WMLPSRPH 8 Unmodified _WMLPSRPH_ 0 0 0 HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|11|1|sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|11|1|sense HERVH48-int_dup114|chr21:42922766-42924948:-|1.1864903496807409|0.181927014535829|2.71|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 512.2612915039062 2 512.263279 1022.51201 NaN NaN NaN NaN NaN NaN NaN 79.322 1 79.322 78.822 79.822 0 0 0 0 0.40738 1 18627 18627 0.79363 0.10326 1 54318 8170 33952 33970 62572 62572 0.0016497083939839285 WMLWMSQLC 9 Unmodified _WMLWMSQLC_ 0 0 0 ENST00000462715.1_1_1:36602806-36603094:-|nuORF ENST00000462715.1_1_1:36602806-36603094:-|nuORF ENST00000462715.1_1_1:36602806-36603094:-|nuORF MSMS UPN48_class_I_Rep_1 5 599.266357421875 2 599.266316 1196.51808 NaN NaN NaN NaN NaN NaN NaN 37.539 1 41.044 40.544 41.544 3.5052 0 0 0 0.39518 1 6396 6396 1.8442 0 1 54319 6871 33953 33971 62573 62573 -0.0723201503560631 WMLYFLLF 8 Unmodified _WMLYFLLF_ 0 0 0 REV__L1MB8_dup11003|chr11:66174062-66174868:+|1.3286086103403931|0.0169556361785914|6.29|151.0|44|1|anti-sense REV__L1MB8_dup11003|chr11:66174062-66174868:+|1.3286086103403931|0.0169556361785914|6.29|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_2 6 566.7998657226562 2 566.798632 1131.58271 NaN NaN NaN NaN NaN NaN NaN 78.766 1 82.399 81.899 82.899 3.6331 0 0 0 0.40581 1 18689 18689 2.8892 0 1 + 54320 26341 33954 33972 62574 62574 0.02218251104341107 WMMALPWSPL 10 Unmodified _WMMALPWSPL_ 0 0 0 REV__ENSG00000198888|ENST00000361390|MT-ND1 REV__ENSG00000198888|ENST00000361390|MT-ND1 MULTI-MSMS UPN48_class_I_Rep_3 7 616.805419921875 2 616.303755 1230.59296 0.58208 0.00035874 -1.6891 -0.001041 -1.107 -0.00068224 616.8043833822594 61.877 0.21337 65.388 65.325 65.538 3.5104 22 18 2 0 0 0 0.56033 1 13701 13701 3.5965 1.7523 1 93381 + 54321 21161 33955 33973 62575 62575 -0.013115092327325328 WMMVAPLRD 9 Unmodified _WMMVAPLRD_ 0 0 0 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 MULTI-MSMS UPN47_class_I_Rep_2 3 559.777587890625 2 559.777905 1117.54126 0.047399 2.6533E-05 -0.71507 -0.00040028 -0.66767 -0.00037375 559.7774472240612 22.471 0.43106 25.916 25.671 26.102 3.4447 59 40 2 0 0 0 0.48846 1 2636 2636 1.8442 0.19162 1 49684 54322 5008 33956 33974 62576 62576 -0.0128125292662844 WMPHPPLV 8 Unmodified _WMPHPPLV_ 0 0 0 MER4E1_dup747|chr12:82725525-82726285:-|1.2008603294672118|0.0150246622433276|6.32|147.0|12|2|sense MER4E1_dup747|chr12:82725525-82726285:-|1.2008603294672118|0.0150246622433276|6.32|147.0|12|2|sense MER4E1_dup747|chr12:82725525-82726285:-|1.2008603294672118|0.0150246622433276|6.32|147.0|12|2|sense MSMS UPN46_class_I_Rep_3 1 488.756591796875 2 488.757298 975.500044 NaN NaN NaN NaN NaN NaN NaN 28.845 1 28.845 28.345 29.345 0 0 0 0 0.40738 1 4487 4487 0.79363 0 1 54323 16047 33957 33975 62577 62577 0.01131354096207815 WMPLKEVL 8 Unmodified _WMPLKEVL_ 0 0 0 REV__Tigger1_dup4706|chr6:20420475-20421685:-|3.577195582572278|0.0491521833807444|6.19|151.0|7|1|sense REV__Tigger1_dup4706|chr6:20420475-20421685:-|3.577195582572278|0.0491521833807444|6.19|151.0|7|1|sense MSMS UPN48_class_I_Rep_3 7 508.30194091796875 2 508.285889 1014.55722 NaN NaN NaN NaN NaN NaN NaN 54.453 1 58.022 57.522 58.522 3.5694 0 0 0 0.4044 1 11449 11449 4.756 0.42677 1 + 54324 32452 33958 33976 62578 62578 0.05052776581919716 WMPRFNIS 8 Unmodified _WMPRFNIS_ 0 0 0 MER11C_dup34|chr1:161063256-161064326:+|2.295717617550171|0.1641442857416054|3.81|151.0|37|3|sense MER11C_dup34|chr1:161063256-161064326:+|2.295717617550171|0.1641442857416054|3.81|151.0|37|3|sense MER11C_dup34|chr1:161063256-161064326:+|2.295717617550171|0.1641442857416054|3.81|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 525.7646484375 2 525.763112 1049.51167 NaN NaN NaN NaN NaN NaN NaN 54.564 1 58.065 57.565 58.565 3.5014 0 0 0 0.4044 1 12317 12317 4.756 0.22714 1 54325 15793 33959 33977 62579 62579 -0.011104488804676294 WMPSGFNFM 9 Unmodified _WMPSGFNFM_ 0 0 0 REV__ENST00000579878.1_1_17:30219272-30221731:-|nuORF REV__ENST00000579878.1_1_17:30219272-30221731:-|nuORF MSMS UPN46_class_I_Rep_3 1 558.7362670898438 2 558.735706 1115.45686 NaN NaN NaN NaN NaN NaN NaN 111.52 1 111.52 111.02 112.02 0 0 0 0 0.39428 1 27501 27501 2.0598 0.40713 1 + 54326 21562 33960 33978 62580 62580 -0.09625203743394195 WMPVIVVI 8 Unmodified _WMPVIVVI_ 0 0 0 REV__L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|32|3|anti-sense REV__L1MC4_dup15029|chr10:6162408-6163053:-|1.3449934066764997|0.0223373103899796|5.91|151.0|32|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.7850036621094 2 478.785524 955.556496 0.17674 8.4619E-05 -0.38206 -0.00018292 -0.20532 -9.8305E-05 478.7853215596349 83.276 0.6094 86.815 86.476 87.086 3.5386 105 62 2 0 0 0 0.82752 1 20889 20889 0.79363 0.79363 1 178300 + 54327 26817 33961 33979 62581 62581 0.0769398193286861 WMQKMWYIYTM 11 Unmodified _WMQKMWYIYTM_ 0 0 0 L1PA14_dup1698|chr9:284574-285104:+|2.3823598969362108|0.0235403496162396|6.66|151.0|16|3|sense L1PA14_dup1698|chr9:284574-285104:+|2.3823598969362108|0.0235403496162396|6.66|151.0|16|3|sense L1PA14_dup1698|chr9:284574-285104:+|2.3823598969362108|0.0235403496162396|6.66|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 527.57421875 3 527.574805 1579.70258 NaN NaN NaN NaN NaN NaN NaN 29.038 1 32.588 32.088 33.088 3.5499 0 0 0 0.38417 1 3978 3978 0.45452 0.046251 1 54328 13824 33962 33980 62582 62582 -0.06407871675696697 WMQPKLKR 8 Unmodified _WMQPKLKR_ 0 0 0 REV__L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|24|1|sense REV__L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|24|1|sense MSMS UPN47_class_I_Rep_2 3 543.8168334960938 2 543.815679 1085.6168 NaN NaN NaN NaN NaN NaN NaN 21.765 1 25.189 24.689 25.689 3.4241 0 0 0 0.40746 1 2481 2481 0.69038 0.16561 1 + 54329 26562 33963 33981 62583 62583 0.07742092315947957 WMRAAPPR 8 Unmodified _WMRAAPPR_ 0 0 0 REV__ENSG00000135702|ENST00000336257|CHST5 REV__ENSG00000135702|ENST00000336257|CHST5 MULTI-MSMS UPN47_class_I_Rep_3 4 492.7628479003906 2 492.763446 983.51234 0.0061938 3.0521E-06 -0.97351 -0.00047971 -0.96732 -0.00047666 492.7627780843134 45.374 0.97491 48.618 48.263 49.238 3.2441 111 60 3 0 0 0 0.82752 1 9759 9759 2.3027 0.4585 1 122690 + 54330 19151 33964 33982 62584 62584 0.01992390559234991 WMVFHIMK 8 Unmodified _WMVFHIMK_ 0 0 0 REV__L1MB3_dup4674|chr5:14425058-14425597:-|1.1218652047793536|0.0392743758764216|4.84|150.0|5|1|sense REV__L1MB3_dup4674|chr5:14425058-14425597:-|1.1218652047793536|0.0392743758764216|4.84|150.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 546.2810668945312 2 546.280083 1090.54561 NaN NaN NaN NaN NaN NaN NaN 33.867 1 37.565 37.065 38.065 3.6983 0 0 0 0.40746 1 6019 6019 0.69038 0 1 + 54331 25892 33965 33983 62585 62585 0.003962562869446629 WMVRSTQRN 9 Unmodified _WMVRSTQRN_ 0 0 0 L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|51|2|sense L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|51|2|sense L1MEc_dup15768|chr15:67683790-67685777:+|1.07404332991525|0.047434243382167|4.5|151.0|51|2|sense MSMS UPN48_class_I_Rep_1 5 589.6683959960938 2 589.298381 1176.58221 NaN NaN NaN NaN NaN NaN NaN 34.372 1 37.887 37.387 38.387 3.5144 0 0 0 0.39428 1 5488 5488 2.0598 0 1 54332 13038 33966 33984 62586 62586 0.0009822443719258445 WMWWRAPV 8 Unmodified _WMWWRAPV_ 0 0 0 AluYc_dup2974|chr11:66663369-66663628:-|1.0264913184086149|0.1415105662829709|2.86|151.0|1|1|sense;AluSx3_dup12136|chr7:5395710-5396012:+|1.3072495843094871|0.014596096089709|6.48|151.0|10|3|sense AluYc_dup2974|chr11:66663369-66663628:-|1.0264913184086149|0.1415105662829709|2.86|151.0|1|1|sense AluYc_dup2974|chr11:66663369-66663628:-|1.0264913184086149|0.1415105662829709|2.86|151.0|1|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 566.7847290039062 2 566.281472 1130.54839 0.056107 3.1772E-05 0.78275 0.00044326 0.83886 0.00047503 566.7847868473583 23.579 0.12608 23.579 23.474 23.6 0 10 9 2 0 0 0 0.82752 1 2980 2980 0.79363 0 1 28128 54333 328 33967 33985 62587 62587 -0.011661522639087707 WNCWVMWH 8 Unmodified _WNCWVMWH_ 0 0 0 L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|39|2|anti-sense L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|39|2|anti-sense L1MB3_dup16528|chr20:41089326-41089964:-|2.015067731153146|0.0871947440037465|4.53|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_1 5 581.2413940429688 2 581.241489 1160.46843 NaN NaN NaN NaN NaN NaN NaN 113.01 1 116.64 116.14 117.14 3.6314 0 0 0 0.40738 1 27441 27441 0.79363 0.10326 1 54334 10370 33968 33986 62588 62588 -0.1053896192938737 WNFGKQFNW 9 Unmodified _WNFGKQFNW_ 0 0 0 MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|29|2|sense MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|29|2|sense MER4-int_dup2012|chr11:3115175-3116573:+|3.737593862477447|0.1808346971010168|4.37|151.0|29|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 613.79052734375 2 613.790715 1225.56688 0.5131 0.00031493 -1.1291 -0.000693 -0.61596 -0.00037807 613.7901663666298 56.877 0.19733 60.371 60.227 60.424 3.4942 18 14 2 0 0 0 0.48846 1 12276 12276 1.8442 0.36234 1 110110 54335 15941 33969 33987 62589 62589 -0.03688319088337266 WNFHLIFF 8 Unmodified _WNFHLIFF_ 0 0 0 L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|42|3|anti-sense L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|42|3|anti-sense L1MEg_dup4685|chr5:38979804-38980492:-|2.01633353107336|0.0472604656300044|5.41|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_1 2 562.2894287109375 2 562.28982 1122.56509 NaN NaN NaN NaN NaN NaN NaN 71.855 1 75.23 74.73 75.73 3.3751 0 0 0 0.40738 1 17545 17545 0.79363 0 1 54336 13388 33970 33988 62590 62590 0.00870671893699182 WNHCLRWEK 9 Unmodified _WNHCLRWEK_ 0 0 0 MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|38|1|anti-sense MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|38|1|anti-sense MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|38|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 636.30712890625 2 636.308749 1270.60295 0.48141 0.00030633 -0.64763 -0.00041209 -0.16622 -0.00010577 636.308359158724 53.784 0.48882 56.979 56.78 57.269 3.1948 37 31 2 0 0 0 0.49026 1 12232 12232 1.6526 0 1 85588 54337 15845 33971 33989 62591 62591 -0.021531851831468884 WNHKRLQI 8 Unmodified _WNHKRLQI_ 0 0 0 L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|87|2|sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|87|2|sense L1MA9_dup217|chr1:77607937-77613060:+|6.8584695653349605|0.0744297562614982|6.53|151.0|87|2|sense MSMS UPN48_class_I_Rep_3 7 547.7546997070312 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 21.877 1 25.591 25.091 26.091 3.7144 0 0 0 0.40746 1 2138 2138 0.69038 0 1 54338 10130 33972 33990 62592 62592 0.07143379902527158 WNIFVPLSTA 10 Unmodified _WNIFVPLSTA_ 0 0 0 REV__L1ME1_dup22543|chr12:62297620-62298242:+|1.0941364353122467|0.0093916398767089|6.86|151.0|40|2|anti-sense REV__L1ME1_dup22543|chr12:62297620-62298242:+|1.0941364353122467|0.0093916398767089|6.86|151.0|40|2|anti-sense MSMS UPN48_class_I_Rep_2 6 574.31982421875 2 574.310949 1146.60735 NaN NaN NaN NaN NaN NaN NaN 58.316 1 61.815 61.315 62.315 3.4987 0 0 0 0.53105 1 12690 12690 1.4819 0.15237 1 + 54339 27681 33973 33991 62593 62593 0.03990602511430552 WNIYRRYT 8 Unmodified _WNIYRRYT_ 0 0 0 nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29 nc|ENSG00000048471|Q8TEQ0-2|SNX29 nc|ENSG00000048471|Q8TEQ0-2|SNX29 MSMS UPN48_class_I_Rep_1 5 586.3035278320312 2 586.30399 1170.59343 NaN NaN NaN NaN NaN NaN NaN 30.788 1 34.33 33.83 34.83 3.542 0 0 0 0.40746 1 4468 4468 0.69038 0 1 54340 895 33974 33992 62594 62594 0.0149536980297853 WNKARKQY 8 Unmodified _WNKARKQY_ 0 0 0 L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|23|2|sense L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|23|2|sense L1M2_dup734|chr2:32571111-32572350:-|2.2178754145861164|0.1099503502061021|4.33|151.0|23|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 547.2982788085938 2 547.298707 1092.58286 -0.16647 -9.111E-05 -0.96892 -0.00053029 -1.1354 -0.0006214 547.298191995878 32.006 0.41919 35.305 35.057 35.476 3.2991 35 31 2 0 0 0 0.82752 1 5522 5522 2.5775 0 1 40004 54341 8707 33975 33993 62595 62595 0.04027387148562411 WNKHWYWV 8 Unmodified _WNKHWYWV_ 0 0 0 REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|186|3|sense REV__L1PB1_dup11022|chr14:52474841-52480961:+|1.161353496752744|0.1624343412502618|2.84|151.0|186|3|sense MSMS UPN46_class_I_Rep_3 1 406.8581848144531 3 406.866293 1217.57705 NaN NaN NaN NaN NaN NaN NaN 21.4 1 21.4 20.9 21.9 0 0 0 0 0.40674 1 2387 2387 1.6526 0.69035 1 + 54342 30303 33976 33994 62596 62596 -0.023037113631289685 WNKTENPEI 9 Unmodified _WNKTENPEI_ 0 0 0 L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|80|2|sense L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|80|2|sense L1PB1_dup5591|chr7:15260233-15264070:+|1.7037791813672938|0.0087542962387705|7.6|144.0|80|2|sense MSMS UPN48_class_I_Rep_2 6 565.7775268554688 2 565.77747 1129.54039 NaN NaN NaN NaN NaN NaN NaN 50.668 1 54.336 53.836 54.836 3.6679 0 0 0 0.3824 1 10366 10366 4.897 0.141 1 54343 15152 33977 33995 62597 62597 -0.019200527703333137 WNLPMRCC 8 Unmodified _WNLPMRCC_ 0 0 0 REV__L1MC3_dup494|chr1:173986868-173989018:-|9.379207212241951|0.1695853318336435|5.79|151.0|103|2|anti-sense REV__L1MC3_dup494|chr1:173986868-173989018:-|9.379207212241951|0.1695853318336435|5.79|151.0|103|2|anti-sense MSMS UPN47_class_I_Rep_2 3 511.2724304199219 2 511.722075 1021.4296 NaN NaN NaN NaN NaN NaN NaN 51.083 1 54.421 53.921 54.921 3.3386 0 0 0 0.40625 1 11285 11285 2.3027 1.5091 1 + 54344 26756 33978 33996 62598 62598 -0.08026010555420271 WNNPLKGLG 9 Unmodified _WNNPLKGLG_ 0 0 0 REV__HERV9N-int_dup170|chr12:29169953-29171035:-|3.1086337561351067|0.2381617579793208|3.71|151.0|30|3|sense REV__HERV9N-int_dup170|chr12:29169953-29171035:-|3.1086337561351067|0.2381617579793208|3.71|151.0|30|3|sense MSMS UPN48_class_I_Rep_2 6 500.25537109375 2 499.774534 997.534515 NaN NaN NaN NaN NaN NaN NaN 27.687 1 31.318 30.818 31.818 3.6311 0 0 0 0.4029 1 3704 3704 0 0 1 + 54345 23619 33979 33997 62599 62599 0.03564893508689693 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 634.8761596679688 2 634.378355 1266.74216 0.72558 0.00046029 -1.1167 -0.00070843 -0.39116 -0.00024814 634.8779256949666 108.36 0.39332 108.36 108.29 108.68 0 85 48 3 0 0 0 0.56033 1 26483 26483 3.5965 0 1 8049400 54346 7511 33980 33998 62600 62600 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_1 2 634.377685546875 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.66 1 110.37 109.87 110.87 3.7088 0 0 0 0.53105 1 26143 26143 1.4819 0 1 54347 7511 33980 33998 62601 62601 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_1 2 634.3770141601562 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.8 1 110.5 110 111 3.7023 0 0 0 0.53105 1 26173 26173 1.4819 0 1 54348 7511 33980 33998 62602 62602 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 634.3751220703125 2 634.378355 1266.74216 0.63449 0.0004025 -2.0673 -0.0013115 -1.4329 -0.00090897 634.3773777734528 106.32 0.16323 109.85 109.79 109.95 3.5345 36 23 2 0 0 0 0.56033 2 25756 25756;25768 3.5965 0 1 222880 54349 7511 33980 33998 62603;62604 62603 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 634.376953125 2 634.378355 1266.74216 0.63453 0.00040253 -1.8276 -0.0011594 -1.1931 -0.00075685 634.3777199969353 106.44 0.13304 109.98 109.95 110.08 3.5345 32 19 2 0 0 0 0.56333 1 25788 25788 1.4819 0 1 290770 54350 7511 33980 33998 62605 62605 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_2 3 634.3790283203125 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.35 1 109.89 109.39 110.39 3.5345 0 0 0 0.53105 1 25764 25764 1.4819 0 1 54351 7511 33980 33998 62606 62606 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_2 3 634.3778076171875 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 107.07 1 110.6 110.1 111.1 3.5345 0 0 0 0.53105 1 25907 25907 3.5965 0 1 54352 7511 33980 33998 62607 62607 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_2 3 634.3773193359375 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 107.22 1 110.76 110.26 111.26 3.5345 0 0 0 0.53105 1 25940 25940 3.5965 0 1 54353 7511 33980 33998 62608 62608 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 634.3794555664062 2 634.378355 1266.74216 0.51351 0.00032576 -1.3465 -0.00085419 -0.83299 -0.00052843 634.3779707884426 106.64 0.12878 110.18 110.11 110.24 3.5367 22 19 2 0 0 0 0.56033 1 26054 26054 3.5965 0 1 111770 54354 7511 33980 33998 62609 62609 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.3778076171875 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 103.46 1 106.96 106.46 107.46 3.5057 0 0 0 0.53105 1 25386 25386 3.5965 0 1 54355 7511 33980 33998 62610 62610 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN47_class_I_Rep_3 4 634.3780517578125 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.15 1 109.69 109.19 110.19 3.5367 0 0 0 0.53105 1 25962 25962 3.5965 0 1 54356 7511 33980 33998 62611 62611 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN48_class_I_Rep_1 5 634.378173828125 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.02 1 109.65 109.15 110.15 3.6277 0 0 0 0.53105 1 25550 25550 1.4819 0 1 54357 7511 33980 33998 62612 62612 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN48_class_I_Rep_1 5 634.37744140625 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.33 1 109.95 109.45 110.45 3.6277 0 0 0 0.53105 1 25621 25621 1.4819 0 1 54358 7511 33980 33998 62613 62613 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 634.3783569335938 2 634.378355 1266.74216 0.49746 0.00031558 -0.71258 -0.00045205 -0.21512 -0.00013647 634.3775748298152 105.87 0.32095 109.55 109.47 109.79 3.6834 83 45 3 0 0 0 0.56333 3 25044 25044;25066;25069 1.4819 0 1 296160 54359 7511 33980 33998 62614;62615;62616 62614 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN48_class_I_Rep_3 7 634.3768920898438 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 103.08 1 106.83 106.33 107.33 3.7434 0 0 0 0.53105 1 24354 24354 3.5965 0 1 54360 7511 33980 33998 62617 62617 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MSMS UPN48_class_I_Rep_3 7 634.3778076171875 2 634.378355 1266.74216 NaN NaN NaN NaN NaN NaN NaN 106.38 1 110.07 109.57 110.57 3.6899 0 0 0 0.53105 1 25087 25087 1.4819 0 1 54361 7511 33980 33998 62618 62618 0.1194552049653339 WNPRVKRVGR 10 Unmodified _WNPRVKRVGR_ 0 0 0 ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF ENST00000570101.5_1_16:58700792-58701185:-|nuORF MULTI-MATCH UPN46_class_I_Rep_3 1 2 634.378355 1266.74216 0.72452 0.00045962 -2.1179 -0.0013436 -1.3934 -0.00088395 634.3770996671615 109.71 0.29453 109.71 109.55 109.85 0 -0.19735 -0.00017815 NaN 3.5965 30 25 2 NaN NaN NaN NaN 0 NaN NaN 0 557440 54362 7511 33980 33998 0.1194552049653339 WNPYDLFT 8 Unmodified _WNPYDLFT_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-3|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-3|CFAP61 MSMS UPN48_class_I_Rep_2 6 528.7161254882812 2 528.245275 1054.476 NaN NaN NaN NaN NaN NaN NaN 80.736 1 84.381 83.881 84.881 3.6446 0 0 0 0.40404 1 19154 19154 5.2307 0 1 + 54363 18002 33981 33999 62619 62619 -0.04906207856470246 WNQAPFGPGQH 11 Unmodified _WNQAPFGPGQH_ 0 0 0 REV__L1P3_dup1785|chr9:5152749-5153485:+|1.050685510305029|0.0083446047349056|6.98|151.0|15|3|sense REV__L1P3_dup1785|chr9:5152749-5153485:+|1.050685510305029|0.0083446047349056|6.98|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 619.7879638671875 2 619.788704 1237.56285 NaN NaN NaN NaN NaN NaN NaN 51.619 1 54.835 54.335 55.335 3.2163 0 0 0 0.38417 1 11503 11503 2.7352 1.0826 1 + 54364 28877 33982 34000 62620 62620 -0.04642408582049029 WNQEFEEF 8 Unmodified _WNQEFEEF_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|210|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|210|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.7354736328125 2 564.735271 1127.45599 0.48433 0.00027352 -0.22959 -0.00012966 0.25473 0.00014386 564.7350018793935 55.117 0.79656 58.625 58.365 59.161 3.5082 130 50 3 0 0 0 0.82752 1 11671 11671 16.942 0 1 475500 + 54365 25322 33983 34001 62621 62621 -0.10264003587099069 WNQEFEEF 8 Unmodified _WNQEFEEF_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|210|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|210|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 564.7353515625 2 564.735271 1127.45599 0.61185 0.00034553 -0.38097 -0.00021515 0.23088 0.00013039 564.7349093197084 55.127 0.76085 58.682 58.336 59.097 3.5559 110 43 3 0 0 0 0.82752 2 11636 11636;11680 11.64 0 1 631720 + 54366 25322 33983 34001 62622;62623 62622 -0.10264003587099069 WNQEFEEF 8 Unmodified _WNQEFEEF_ 0 0 0 REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|210|2|anti-sense REV__L1MA4A_dup5356|chr15:52452864-52457159:+|2.3669249958663348|0.0170169178941323|7.12|151.0|210|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 564.7354736328125 2 564.735271 1127.45599 0.31135 0.00017583 -0.023731 -1.3402E-05 0.28762 0.00016243 564.7350768357563 55.089 0.87758 58.658 58.239 59.117 3.5687 123 49 3 0 0 0 0.82752 1 11566 11566 11.64 0 1 572280 + 54367 25322 33983 34001 62624 62624 -0.10264003587099069 WNQWLMRY 8 Unmodified _WNQWLMRY_ 0 0 0 L1ME3F_dup1436|chr5:43081022-43081334:+|1.5642520600730356|0.3050852373641562|2.36|151.0|16|2|anti-sense L1ME3F_dup1436|chr5:43081022-43081334:+|1.5642520600730356|0.3050852373641562|2.36|151.0|16|2|anti-sense L1ME3F_dup1436|chr5:43081022-43081334:+|1.5642520600730356|0.3050852373641562|2.36|151.0|16|2|anti-sense MSMS UPN48_class_I_Rep_2 6 598.7874145507812 2 598.787118 1195.55968 NaN NaN NaN NaN NaN NaN NaN 39.879 1 43.62 43.12 44.12 3.7413 0 0 0 0.40746 1 7123 7123 0.69038 0 1 54368 12813 33984 34002 62625 62625 -0.03027374960402085 WNRGIIIKP 9 Unmodified _WNRGIIIKP_ 0 0 0 REV__MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|20|3|sense REV__MER50_dup2223|chr16:75035436-75036132:-|2.4654571690960543|0.0041040301256813|9.23|151.0|20|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8347778320312 2 548.834926 1095.6553 -0.0034476 -1.8922E-06 0.041256 2.2643E-05 0.037808 2.0751E-05 548.8349430692023 23.786 0.068764 23.786 23.75 23.818 0 13 7 2 0 0 0 0.50582 1 3039 3039 0 0 1 43705 + 54369 31371 33985 34003 62626 62626 0.11129721222164335 WNRIRNYL 8 Unmodified _WNRIRNYL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64976762-64977505:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-SECPEP UPN46_class_I_Rep_3 1 567.8117065429688 2 567.811982 1133.60941 0.41544 0.00023589 -1.0303 -0.000585 -0.61482 -0.0003491 567.811472038887 68.962 0.053253 68.962 68.935 68.988 0 13 4 5 0 0 0 0.72333 1 15782 15782 5.2307 0 1 1139500 54370 794 33986 34004 62627 62627 0.047950760398634884 WNRIRNYL 8 Unmodified _WNRIRNYL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64976762-64977505:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MSMS UPN47_class_I_Rep_1 2 567.8116455078125 2 567.811982 1133.60941 NaN NaN NaN NaN NaN NaN NaN 63.572 1 66.932 66.432 67.432 3.3595 0 0 0 0.40404 1 15051 15051 5.2307 0 1 54371 794 33986 34004 62628 62628 0.047950760398634884 WNRIRNYL 8 Unmodified _WNRIRNYL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64976762-64977505:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS UPN47_class_I_Rep_3 4 567.8114013671875 2 567.811982 1133.60941 0.4233 0.00024036 -1.1079 -0.00062908 -0.68459 -0.00038872 567.811396401923 63.599 0.41602 66.773 66.525 66.941 3.1741 50 34 2 0 0 0 0.82752 1 15125 15125 5.2307 0 1 141320 54372 794 33986 34004 62629 62629 0.047950760398634884 WNRSWYDGGE 10 Unmodified _WNRSWYDGGE_ 0 0 0 REV__ENST00000414812.5_1_2:70485050-70486579:+|nuORF REV__ENST00000414812.5_1_2:70485050-70486579:+|nuORF MSMS UPN47_class_I_Rep_3 4 635.2677612304688 2 635.267801 1268.52105 NaN NaN NaN NaN NaN NaN NaN 116.92 1 120.36 119.86 120.86 3.4425 0 0 0 0.53105 1 28782 28782 0 0 1 + 54373 22210 33987 34005 62630 62630 -0.10247009061276913 WNVFLCICLY 10 Unmodified _WNVFLCICLY_ 0 0 0 L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|83|1|anti-sense L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|83|1|anti-sense L1MC4_dup2409|chr2:55018336-55020461:+|3.4522676141362827|0.0662402421828308|5.7|151.0|83|1|anti-sense MSMS UPN47_class_I_Rep_1 2 637.3076782226562 2 637.309038 1272.60352 NaN NaN NaN NaN NaN NaN NaN 50.824 1 54.452 53.952 54.952 3.6285 0 0 0 0.53105 1 11178 11178 1.8442 0.36234 1 54374 11472 33988 34006 62631 62631 -0.021875265783137365 WNWLLWFWRLR 11 Unmodified _WNWLLWFWRLR_ 0 0 0 MLT2B4_dup3298|chr12:50123965-50124378:+|1.2623599977953783|0.1875063138452094|2.75|151.0|12|1|anti-sense MLT2B4_dup3298|chr12:50123965-50124378:+|1.2623599977953783|0.1875063138452094|2.75|151.0|12|1|anti-sense MLT2B4_dup3298|chr12:50123965-50124378:+|1.2623599977953783|0.1875063138452094|2.75|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 559.3032836914062 3 559.305134 1674.89357 NaN NaN NaN NaN NaN NaN NaN 13.82 1 17.207 16.707 17.707 3.3871 0 0 0 0.38417 1 419 419 0 0 1 54375 16511 33989 34007 62632 62632 0.08312081804388072 WNWLRKWMK 9 Unmodified _WNWLRKWMK_ 0 0 0 REV__THE1A-int_dup681|chr7:32521164-32522729:+|2.946154174676851|0.0833048587617001|5.14|151.0|1|1|sense;REV__THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense REV__THE1B-int_dup618|chr2:210062398-210063942:+|1.427362471674382|0.1343715173618652|3.41|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 449.7665100097656 3 449.909615 1346.70702 NaN NaN NaN NaN NaN NaN NaN 24.612 1 27.963 27.463 28.463 3.3509 0 0 0 0.40177 1 3330 3330 0.26902 0.1097 1 + 54376 32219;32274 33990 34008 62633 62633 0.04753141644368952 WNYNYYPP 8 Unmodified _WNYNYYPP_ 0 0 0 nc|ENSG00000106392|Q9NS00-2|C1GALT1;ENSG00000106392|ENST00000436587|C1GALT1 nc|ENSG00000106392|Q9NS00-2|C1GALT1 nc|ENSG00000106392|Q9NS00-2|C1GALT1 MSMS UPN48_class_I_Rep_2 6 558.7408447265625 2 558.742899 1115.47125 NaN NaN NaN NaN NaN NaN NaN 65.418 1 68.897 68.397 69.397 3.4792 0 0 0 0.40738 1 14869 14869 0.79363 0 1 54377 1787 33991 34009 62634 62634 -0.08187091999252516 WPAALWCL 8 Unmodified _WPAALWCL_ 0 0 0 REV__ENSG00000154485|ENST00000368808|MMP21 REV__ENSG00000154485|ENST00000368808|MMP21 MSMS UPN47_class_I_Rep_3 4 480.24285888671875 2 480.244024 958.473494 NaN NaN NaN NaN NaN NaN NaN 26.338 1 29.685 29.185 30.185 3.3478 0 0 0 0.40738 1 3837 3837 0.79363 0 1 + 54378 19740 33992 34010 62635 62635 -0.0074033479515946965 WPALLDQEAPG 11 Unmodified _WPALLDQEAPG_ 0 0 0 REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|245|1|anti-sense REV__L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|245|1|anti-sense MSMS UPN48_class_I_Rep_3 7 598.7994384765625 2 598.800946 1195.58734 NaN NaN NaN NaN NaN NaN NaN 38.675 1 42.334 41.834 42.834 3.6595 0 0 0 0.38417 1 6674 6674 4.897 1.0207 1 + 54379 30203 33993 34011 62636 62636 -0.0026319321921164374 WPALLGWGNSP 11 Unmodified _WPALLGWGNSP_ 0 0 0 L1PA5_dup1226|chr2:135937557-135938599:-|1.2207210960649642|0.2871534155793401|2.09|151.0|45|2|anti-sense;L1PA5_dup4653|chr6:109534605-109540728:-|1.705763476277734|0.2318589926974389|2.88|151.0|357|3|anti-sense;L1PA5_dup5393|chr7:152060478-152066587:-|3.165084499134|0.0929010040673461|5.09|151.0|299|2|anti-sense;L1PA4_dup8318|chr10:32754653-32760755:+|1.3144528340537596|0.2516192006831281|2.39|151.0|359|3|anti-sense;L1PA5_dup4954|chr7:37120164-37126300:+|3.0874604730534543|0.0560020460736359|5.78|151.0|291|2|anti-sense;L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|215|1|anti-sense;L1PA6_dup169|chr1:97357838-97363959:+|2.2685149498084263|0.1303794113036645|4.12|151.0|284|2|anti-sense L1PA5_dup1226|chr2:135937557-135938599:-|1.2207210960649642|0.2871534155793401|2.09|151.0|45|2|anti-sense L1PA5_dup1226|chr2:135937557-135938599:-|1.2207210960649642|0.2871534155793401|2.09|151.0|45|2|anti-sense MSMS UPN48_class_I_Rep_3 7 599.307373046875 2 599.306198 1196.59784 NaN NaN NaN NaN NaN NaN NaN 41.838 1 45.484 44.984 45.984 3.6458 0 0 0 0.38417 1 7601 7601 1.1933 0 1 54380 14398 33994 34012 62637 62637 0.0074083422589410475 WPAQCAHTRAR 11 Unmodified _WPAQCAHTRAR_ 0 0 0 REV__ENST00000361756.7_1_11:71668304-71671834:+|nuORF REV__ENST00000361756.7_1_11:71668304-71671834:+|nuORF MSMS UPN48_class_I_Rep_3 7 432.88525390625 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 99.577 1 103.46 102.96 103.96 3.8839 0 0 0 0.38417 1 23581 23581 0.40827 0 1 + 54381 21908 33995 34013 62638 62638 -0.005432819229326924 WPARWRGK 8 Unmodified _WPARWRGK_ 0 0 0 REV__LTR13_dup360|chr17:43257450-43258475:+|1.756546529984414|0.0014347360520269|10.26|151.0|5|1|sense REV__LTR13_dup360|chr17:43257450-43258475:+|1.756546529984414|0.0014347360520269|10.26|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 528.7958374023438 2 528.796135 1055.57772 NaN NaN NaN NaN NaN NaN NaN 113.15 1 116.78 116.28 117.28 3.6314 0 0 0 0.40746 1 27479 27479 0.69038 0 1 + 54382 30836 33996 34014 62639 62639 0.052151280766111086 WPATCQRPTG 10 Unmodified _WPATCQRPTG_ 0 0 0 REV__ENST00000603284.1_1_8:77316524-77316740:+|nuORF REV__ENST00000603284.1_1_8:77316524-77316740:+|nuORF MSMS UPN48_class_I_Rep_3 7 558.7664184570312 2 558.766383 1115.51821 NaN NaN NaN NaN NaN NaN NaN 22.703 1 26.454 25.954 26.954 3.7507 0 0 0 0.53105 1 2359 2359 1.3295 0 1 + 54383 23220 33997 34015 62640 62640 -0.03492555719753909 WPAWHWRV 8 Unmodified _WPAWHWRV_ 0 0 0 REV__LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|63|3|anti-sense REV__LTR12C_dup1956|chr11:76060391-76061823:+|1.4860691482626072|0.0415468782863|5.16|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_2 3 569.2906494140625 2 569.290685 1136.56682 NaN NaN NaN NaN NaN NaN NaN 15.254 1 18.641 18.141 19.141 3.3864 0 0 0 0.40798 1 771 771 0 0 1 + 54384 30809 33998 34016 62641 62641 0.003997257022774647 WPCCGAAARCC 11 Unmodified _WPCCGAAARCC_ 0 0 0 REV__ENST00000510356.5_1_17:46908399-46919258:+|nuORF REV__ENST00000510356.5_1_17:46908399-46919258:+|nuORF MSMS UPN47_class_I_Rep_3 4 570.27685546875 2 570.713924 1139.4133 NaN NaN NaN NaN NaN NaN NaN 54.516 1 57.701 57.201 58.201 3.1856 0 0 0 0.38417 1 12385 12385 0 0 1 + 54385 22697 33999 34017 62642 62642 -0.15083459783818398 WPDWASPRV 9 Unmodified _WPDWASPRV_ 0 0 0 ENST00000593069.1_2_19:56159415-56160398:+|nuORF;ENST00000308964.7_1_19:56159415-56160373:+|nuORF ENST00000593069.1_2_19:56159415-56160398:+|nuORF ENST00000593069.1_2_19:56159415-56160398:+|nuORF MSMS UPN46_class_I_Rep_3 1 557.2765502929688 2 557.277441 1112.54033 NaN NaN NaN NaN NaN NaN NaN 83.195 1 83.195 82.695 83.695 0 0 0 0 0.39428 1 19748 19748 2.0598 0 1 54386 7640 34000 34018 62643 62643 -0.01144007979678463 WPEFTNFSI 9 Unmodified _WPEFTNFSI_ 0 0 0 REV__MER44C_dup468|chr8:52648575-52649132:-|1.8618403170468456|0.4435283819417341|2.07|151.0|33|3|anti-sense REV__MER44C_dup468|chr8:52648575-52649132:-|1.8618403170468456|0.4435283819417341|2.07|151.0|33|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.274169921875 2 570.771657 1139.52876 -0.11903 -6.7939E-05 0.52459 0.00029942 0.40556 0.00023148 571.2733390713029 34.394 0.55147 37.658 37.403 37.954 3.2639 80 38 3 0 0 0 0.49187 1 6244 6244 1.4819 0.28856 1 84115 + 54387 31324 34001 34019 62644 62644 -0.03542249793645169 WPFHTPELLQ 10 Unmodified _WPFHTPELLQ_ 0 0 0 REV__MLT1D_dup17861|chr17:10116967-10117450:-|1.0199725552750492|0.013721930731407|6.22|151.0|29|3|anti-sense REV__MLT1D_dup17861|chr17:10116967-10117450:-|1.0199725552750492|0.013721930731407|6.22|151.0|29|3|anti-sense MSMS UPN47_class_I_Rep_3 4 634.3252563476562 2 634.327131 1266.63971 NaN NaN NaN NaN NaN NaN NaN 53.156 1 56.351 55.851 56.851 3.1948 0 0 0 0.53105 1 11968 11968 6.2058 1.6769 1 + 54388 31670 34002 34020 62645 62645 0.017053899144229945 WPFIIVTL 8 Unmodified _WPFIIVTL_ 0 0 0 ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|6|1|sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|6|1|sense ERVL-E-int_dup3308|chr5:132289814-132290888:+|1.1342541194271705|0.2148257319187764|2.4|149.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 494.79705810546875 2 494.796946 987.57934 NaN NaN NaN NaN NaN NaN NaN 60.837 1 64.002 63.502 64.502 3.1651 0 0 0 0.40746 1 14311 14311 0.69038 0 1 54389 7754 34003 34021 62646 62646 0.08505324322015895 WPFKEQNN 8 Unmodified _WPFKEQNN_ 0 0 0 REV__L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|105|2|sense REV__L1PA3_dup6385|chrX:56129154-56135710:+|8.783657359138726|0.1454864550760078|5.92|151.0|105|2|sense MSMS UPN46_class_I_Rep_3 1 531.7523193359375 2 531.753798 1061.49304 NaN NaN NaN NaN NaN NaN NaN 47.948 1 47.948 47.448 48.448 0 0 0 0 0.40604 1 9950 9950 2.5775 0.27475 1 + 54390 29551 34004 34022 62647 62647 -0.03524287250661473 WPFLLQRKVH 10 Unmodified _WPFLLQRKVH_ 0 0 0 HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 441.9276428222656 3 441.927663 1322.76116 -0.021134 -9.3396E-06 0.29291 0.00012945 0.27178 0.00012011 441.927693668847 50.2 0.50163 53.725 53.624 54.126 3.5246 56 32 3 0 0 0 0.56273 1 10257 10257 1.9064 0.45126 1 132440 54391 8372 34005 34023 62648 62648 0.11269057067602262 WPFLLQRKVH 10 Unmodified _WPFLLQRKVH_ 0 0 0 HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 441.9278869628906 3 441.927663 1322.76116 0.082673 3.6535E-05 0.26613 0.00011761 0.3488 0.00015415 441.9275704540199 50.111 1.3385 53.806 53.092 54.431 3.6946 131 85 3 0 0 0 0.56273 2 10287 10233;10287 1.9064 0.69154 1 200290 54392 8372 34005 34023 62649;62650 62650 0.11269057067602262 WPFLLQRKVH 10 Unmodified _WPFLLQRKVH_ 0 0 0 HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 441.9277648925781 3 441.927663 1322.76116 0.042271 1.8681E-05 -0.043732 -1.9326E-05 -0.0014608 -6.4559E-07 441.92755631664954 50.507 1.262 54.128 53.113 54.375 3.621 113 82 2 0 0 0 0.56273 1 10212 10212 1.9064 0.69154 1 164700 54393 8372 34005 34023 62651 62651 0.11269057067602262 WPFLLQRKVH 10 Unmodified _WPFLLQRKVH_ 0 0 0 HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense HERVL-int_dup546|chr4:17923951-17925589:+|1.316303403839419|0.0283172088204225|5.54|151.0|83|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 3 441.927663 1322.76116 -0.26748 -0.00011821 2.1853 0.00096575 1.9178 0.00084755 441.9277205316442 50.441 0.11543 53.667 53.595 53.71 3.2262 -0.1645 0.0026799 NaN 1.9064 9 5 3 NaN NaN NaN NaN 0 NaN NaN 0 31535 54394 8372 34005 34023 0.11269057067602262 WPFPAARRQ 9 Unmodified _WPFPAARRQ_ 0 0 0 REV__ENST00000566525.5_1_16:770611-770875:+|nuORF REV__ENST00000566525.5_1_16:770611-770875:+|nuORF MSMS UPN48_class_I_Rep_1 5 564.8076171875 2 564.8067 1127.59885 NaN NaN NaN NaN NaN NaN NaN 25.321 1 28.888 28.388 29.388 3.5667 0 0 0 0.40038 1 2932 2932 0.6015 0 1 + 54395 23066 34006 34024 62652 62652 0.04015093385464752 WPFRHIPP 8 Unmodified _WPFRHIPP_ 0 0 0 L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|96|1|anti-sense L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|96|1|anti-sense L1MA9_dup12289|chr12:70208644-70210828:-|2.0423579486509174|0.1647557114600123|3.63|151.0|96|1|anti-sense MSMS UPN47_class_I_Rep_3 4 525.2704467773438 2 525.287611 1048.56067 NaN NaN NaN NaN NaN NaN NaN 59.109 1 62.275 61.775 62.775 3.1658 0 0 0 0.40625 1 13786 13786 2.3027 0 1 54396 10105 34007 34025 62653 62653 0.03833207470779598 WPFVNAFS 8 Unmodified _WPFVNAFS_ 0 0 0 REV__L1MC1_dup8705|chr10:68047414-68047918:+|1.2824374332294577|0.0167137799052491|6.26|150.0|28|2|anti-sense REV__L1MC1_dup8705|chr10:68047414-68047918:+|1.2824374332294577|0.0167137799052491|6.26|150.0|28|2|anti-sense MSMS UPN46_class_I_Rep_3 1 484.2361755371094 2 484.237253 966.459953 NaN NaN NaN NaN NaN NaN NaN 87.31 1 87.31 86.81 87.81 0 0 0 0 0.40738 1 20913 20913 0.79363 0 1 + 54397 26611 34008 34026 62654 62654 -0.024618693027150584 WPFVNLQR 8 Unmodified _WPFVNLQR_ 0 0 0 L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|32|1|anti-sense L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|32|1|anti-sense L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|32|1|anti-sense MSMS UPN46_class_I_Rep_3 1 530.2903442382812 2 530.290351 1058.56615 NaN NaN NaN NaN NaN NaN NaN 114.22 1 114.22 113.72 114.72 0 0 0 0 0.40625 1 28226 28226 2.3027 0 1 54398 10479 34009 34027 62655 62655 0.03920886262608292 WPFVRGFW 8 Unmodified _WPFVRGFW_ 0 0 0 REV__HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|146|2|anti-sense REV__HERVIP10FH-int_dup293|chr14:30969449-30972048:+|5.407504530125266|0.0580721083991901|6.54|151.0|146|2|anti-sense MSMS UPN47_class_I_Rep_3 4 548.2431640625 2 547.782162 1093.54977 NaN NaN NaN NaN NaN NaN NaN 110.97 1 114.5 114 115 3.529 0 0 0 0.40738 1 27225 27225 0.79363 0.10326 1 + 54399 23768 34010 34028 62656 62656 0.006738050965168441 WPGLFLLL 8 Unmodified _WPGLFLLL_ 0 0 0 REV__ENST00000509198.1_1_4:3521942-3534139:-|nuORF REV__ENST00000509198.1_1_4:3521942-3534139:-|nuORF MSMS UPN48_class_I_Rep_1 5 479.7931213378906 2 479.791664 957.568775 NaN NaN NaN NaN NaN NaN NaN 83.221 1 86.808 86.308 87.308 3.5871 0 0 0 0.40738 1 19898 19898 0.79363 0 1 + 54400 20021 34011 34029 62657 62657 0.08829341667569679 WPGLLVLC 8 Unmodified _WPGLLVLC_ 0 0 0 L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|294|3|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|294|3|anti-sense L1PA16_dup6235|chr7:90750899-90755624:+|1.9751469454462216|0.0241696969840086|6.35|151.0|294|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.7538757324219 2 450.754224 899.493896 0.0068439 3.0849E-06 -0.519 -0.00023394 -0.51216 -0.00023086 450.7538744763393 102.05 0.5972 105.66 105.36 105.96 3.612 133 83 2 0 0 0 0.82752 1 24627 24627 0.79363 0 1 219440 54401 14106 34012 34030 62658 62658 0.04012835864659792 WPGRRPPE 8 Unmodified _WPGRRPPE_ 0 0 0 ENST00000162391.7_1_12:8185724-8186174:+|nuORF ENST00000162391.7_1_12:8185724-8186174:+|nuORF ENST00000162391.7_1_12:8185724-8186174:+|nuORF MSMS UPN46_class_I_Rep_3 1 497.7641296386719 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 117.66 1 117.66 117.16 118.16 0 0 0 0 0.40604 1 29175 29175 2.5775 0 1 54402 5850 34013 34031 62659 62659 0.017431425686936564 WPGWRKLLR 9 Unmodified _WPGWRKLLR_ 0 0 0 ENST00000243077.7_1_12:57553625-57553733:+|nuORF ENST00000243077.7_1_12:57553625-57553733:+|nuORF ENST00000243077.7_1_12:57553625-57553733:+|nuORF MSMS UPN46_class_I_Rep_3 1 606.3612060546875 2 606.361642 1210.70873 NaN NaN NaN NaN NaN NaN NaN 28.793 1 28.793 28.293 29.293 0 0 0 0 0.40038 1 4472 4472 0.6015 0.076735 1 54403 5901 34014 34032 62660 62660 0.11180518724654576 WPHPLQLP 8 Unmodified _WPHPLQLP_ 0 0 0 REV__ENST00000497543.5_1_3:75471615-75471942:-|nuORF REV__ENST00000497543.5_1_3:75471615-75471942:-|nuORF MSMS UPN46_class_I_Rep_3 1 494.43914794921875 2 494.27417 986.533787 NaN NaN NaN NaN NaN NaN NaN 76.452 1 76.452 75.952 76.952 0 0 0 0 0.40738 1 17834 17834 0.79363 0 1 + 54404 22669 34015 34033 62661 62661 0.0399809885960849 WPHRLPIL 8 Unmodified _WPHRLPIL_ 0 0 0 REV__L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|18|1|sense REV__L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|18|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 515.7734985351562 2 516.311087 1030.60762 0.26533 0.00013699 -1.339 -0.00069133 -1.0737 -0.00055434 516.3102328833805 57.512 0.56427 60.949 60.724 61.289 3.437 86 48 2 0 0 0 0.72333 1 13238 13238 13.508 0 1 124090 + 54405 24257 34016 34034 62662 62662 0.09354067021945411 WPHRLPIL 8 Unmodified _WPHRLPIL_ 0 0 0 REV__L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|18|1|sense REV__L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|18|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 515.7731323242188 2 516.311087 1030.60762 0.19212 9.9195E-05 -1.4882 -0.00076839 -1.2961 -0.00066919 516.310304439247 57.911 0.6293 61.079 60.855 61.484 3.1681 64 43 3 0 0 0 0.72333 1 13395 13395 13.508 0 1 124350 + 54406 24257 34016 34034 62663 62663 0.09354067021945411 WPIASWVKLVA 11 Unmodified _WPIASWVKLVA_ 0 0 0 REV__Charlie1a_dup1373|chr3:196776048-196777195:+|1.113764223669975|0.0378558596447943|4.88|151.0|26|3|sense REV__Charlie1a_dup1373|chr3:196776048-196777195:+|1.113764223669975|0.0378558596447943|4.88|151.0|26|3|sense MSMS UPN46_class_I_Rep_3 1 635.3709106445312 2 635.371341 1268.72813 NaN NaN NaN NaN NaN NaN NaN 106.24 1 106.24 105.74 106.74 0 0 0 0 0.38417 1 25910 25910 0.35063 0 1 + 54407 17300 34017 34035 62664 62664 0.10451430224884461 WPICHLWVAM 10 Unmodified _WPICHLWVAM_ 0 0 0 REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|276|3|anti-sense REV__L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|276|3|anti-sense MSMS UPN47_class_I_Rep_2 3 628.3110961914062 2 628.309372 1254.60419 NaN NaN NaN NaN NaN NaN NaN 58.315 1 61.597 61.097 62.097 3.2818 0 0 0 0.53105 1 13490 13490 4.3292 1.594 1 + 54408 29083 34018 34036 62665 62665 -0.01292687138607107 WPIDLKKCST 10 Unmodified _WPIDLKKCST_ 0 0 0 L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|16|2|sense L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|16|2|sense L1MA4_dup3639|chr6:17620800-17621932:+|2.3099914032781466|0.1617728870095714|3.84|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 595.8170776367188 2 595.815541 1189.61653 NaN NaN NaN NaN NaN NaN NaN 40.997 1 44.503 44.003 45.003 3.506 0 0 0 0.53105 1 7420 7420 1.1933 0 1 54409 9682 34019 34037 62666 62666 0.029306278054264112 WPIKLTLK 8 Unmodified _WPIKLTLK_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-4|VPS13C REV__nc|ENSG00000129003|Q709C8-4|VPS13C MSMS UPN47_class_I_Rep_3 4 499.8218994140625 2 499.823495 997.632438 NaN NaN NaN NaN NaN NaN NaN 40.149 1 43.386 42.886 43.886 3.2372 0 0 0 0.40738 1 8011 8011 0.79363 0 1 + 54410 18913 34020 34038 62667 62667 0.13352702104634773 WPILAWLRL 9 Unmodified _WPILAWLRL_ 0 0 0 REV__ENST00000530607.1_1_1:26872355-26877988:+|nuORF REV__ENST00000530607.1_1_1:26872355-26877988:+|nuORF MSMS UPN47_class_I_Rep_1 2 584.3560791015625 2 584.355494 1166.69644 NaN NaN NaN NaN NaN NaN NaN 83.166 1 86.705 86.205 87.205 3.5386 0 0 0 0.40038 1 20794 20794 0.6015 0 1 + 54411 22843 34021 34039 62668 62668 0.11975482261573234 WPIMCSVMY 9 Unmodified _WPIMCSVMY_ 0 0 0 Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|35|3|sense Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|35|3|sense Ricksha_b_dup10|chr1:246072412-246073431:+|2.2694807022588623|0.0072331750153731|8.29|151.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 565.2485961914062 2 565.247591 1128.48063 NaN NaN NaN NaN NaN NaN NaN 32.929 1 36.619 36.119 37.119 3.6896 0 0 0 0.39518 1 5057 5057 1.8442 0.19162 1 54412 32828 34022 34040 62669 62669 -0.0784710630121026 WPISSQTTY 9 Unmodified _WPISSQTTY_ 0 0 0 REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|4|1|sense REV__L1MA3_dup417|chr1:184926538-184928912:-|4.730052898184376|0.048840495289803|6.6|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 541.7636108398438 2 541.761289 1081.50803 NaN NaN NaN NaN NaN NaN NaN 36.164 1 39.419 38.919 39.919 3.2547 0 0 0 0.38639 1 6786 6786 3.9444 0.66309 1 + 54413 25030 34023 34041 62670 62670 -0.02946840173331111 WPITKFKL 8 Unmodified _WPITKFKL_ 0 0 0 REV__L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|118|3|anti-sense REV__L1MEf_dup1846|chr3:60816854-60818495:-|2.13575769781457|0.0590846391950403|5.18|151.0|118|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.805908203125 2 516.81567 1031.61679 NaN NaN NaN NaN NaN NaN NaN 95.66 1 99.069 98.569 99.569 3.4095 0 0 0 0.40746 1 23773 23773 0.69038 0 1 + 54414 28615 34024 34042 62671 62671 0.10224415587617841 WPIVLRIRI 9 Unmodified _WPIVLRIRI_ 0 0 0 REV__Harlequin-int_dup238|chr6:111284651-111288187:-|4.150482132727121|0.2813414849289727|3.88|151.0|186|2|anti-sense REV__Harlequin-int_dup238|chr6:111284651-111288187:-|4.150482132727121|0.2813414849289727|3.88|151.0|186|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 582.8592529296875 2 583.382043 1164.74953 0.49756 0.00029027 -0.31167 -0.00018182 0.18588 0.00010844 583.8824907211331 108.43 0.0578 112.07 112.03 112.08 3.6355 5 4 2 0 0 0 0.12527 1 26646 26646 0.6015 0 1 180660 + 54415 23516 34025 34043 62672 62672 0.17374860044242268 WPIWLFLCV 9 Unmodified _WPIWLFLCV_ 0 0 0 REV__ENST00000604504.5_1_19:35607238-35610445:+|nuORF REV__ENST00000604504.5_1_19:35607238-35610445:+|nuORF MSMS UPN48_class_I_Rep_1 5 589.2578735351562 2 588.817356 1175.62016 NaN NaN NaN NaN NaN NaN NaN 69.534 1 72.988 72.488 73.488 3.4548 0 0 0 0.39326 1 16138 16138 2.3027 0 1 + 54416 23224 34026 34044 62673 62673 0.03937342369954422 WPKLIILI 8 Unmodified _WPKLIILI_ 0 0 0 REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|8|1|sense REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 498.340576171875 2 498.336239 994.657924 0.29022 0.00014463 1.4368 0.000716 1.727 0.00086063 498.33589950552744 109.35 0.2296 112.95 112.91 113.14 3.6046 46 27 2 0 0 0 0.82752 1 27007 27007 0.69038 0 1 1445900 + 54417 30524 34027 34045 62674 62674 0.16038176627102985 WPKLIILI 8 Unmodified _WPKLIILI_ 0 0 0 REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|8|1|sense REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|8|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 498.336239 994.657924 0.29022 0.00014463 1.4368 0.000716 1.727 0.00086063 498.33589950552744 109.35 0.2296 112.95 112.91 113.14 3.6046 0.14568 0.00077613 NaN 0.69038 46 27 2 NaN NaN NaN NaN 0 NaN NaN 0 1445900 + 54418 30524 34027 34045 0.16038176627102985 WPKLIILI 8 Unmodified _WPKLIILI_ 0 0 0 REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|8|1|sense REV__L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|8|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 498.336239 994.657924 0.25559 0.00012737 0.52957 0.00026391 0.78516 0.00039127 498.3355867844356 108.99 0.39346 112.66 112.61 113 3.6751 -0.14568 -0.00012806 NaN 0.69038 63 50 2 NaN NaN NaN NaN 0 NaN NaN 0 3481500 + 54419 30524 34027 34045 0.16038176627102985 WPKMRQIY 8 Unmodified _WPKMRQIY_ 0 0 0 REV__ENSG00000138768|ENST00000514213|USO1 REV__ENSG00000138768|ENST00000514213|USO1 MSMS UPN47_class_I_Rep_1 2 561.2708740234375 2 561.299862 1120.58517 NaN NaN NaN NaN NaN NaN NaN 54.096 1 57.609 57.109 58.109 3.5133 0 0 0 0.4032 1 12175 12175 6.3541 0 1 + 54420 19292 34028 34046 62675 62675 0.029700995620260073 WPKQNTRNK 9 Unmodified _WPKQNTRNK_ 0 0 0 MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|86|1|anti-sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|86|1|anti-sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|86|1|anti-sense MSMS UPN48_class_I_Rep_1 5 586.320068359375 2 586.320171 1170.62579 NaN NaN NaN NaN NaN NaN NaN 97.681 1 101.29 100.79 101.79 3.6088 0 0 0 0.39598 1 23563 23563 1.6526 0 1 54421 15962 34029 34047 62676 62676 0.047301572059723185 WPKRHTSSH 9 Unmodified _WPKRHTSSH_ 0 0 0 REV__MER21B_dup2306|chr16:89391249-89391579:+|1.0648767794827336|0.0120897840363022|6.46|151.0|12|2|anti-sense REV__MER21B_dup2306|chr16:89391249-89391579:+|1.0648767794827336|0.0120897840363022|6.46|151.0|12|2|anti-sense MSMS UPN47_class_I_Rep_2 3 568.2911987304688 2 568.291414 1134.56827 NaN NaN NaN NaN NaN NaN NaN 26.461 1 29.956 29.456 30.456 3.4945 0 0 0 0.39428 1 3832 3832 2.0598 0 1 + 54422 31203 34030 34048 62677 62677 0.006373150004264971 WPKYIHWC 8 Unmodified _WPKYIHWC_ 0 0 0 MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|95|3|anti-sense MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|95|3|anti-sense MER66-int_dup93|chr1:155842849-155844474:+|1.3636188535306308|0.0188595879528192|6.18|151.0|95|3|anti-sense MSMS UPN48_class_I_Rep_2 6 566.738525390625 2 566.77348 1131.53241 NaN NaN NaN NaN NaN NaN NaN 20.322 1 23.97 23.47 24.47 3.648 0 0 0 0.40738 1 1722 1722 0.79363 0 1 54423 16184 34031 34049 62678 62678 -0.02809858500813789 WPLARRWH 8 Unmodified _WPLARRWH_ 0 0 0 L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|217|3|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|217|3|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|217|3|anti-sense MSMS UPN46_class_I_Rep_3 1 561.141845703125 2 561.30941 1120.60427 NaN NaN NaN NaN NaN NaN NaN 39.955 1 39.955 39.455 40.455 0 0 0 0 0.40738 1 7722 7722 0.79363 0.10326 1 54424 15110 34032 34050 62679 62679 0.04878816967925559 WPLARRWH 8 Unmodified _WPLARRWH_ 0 0 0 L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|217|3|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|217|3|anti-sense L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|217|3|anti-sense MSMS UPN48_class_I_Rep_2 6 561.30908203125 2 561.30941 1120.60427 NaN NaN NaN NaN NaN NaN NaN 29.772 1 33.403 32.903 33.903 3.6316 0 0 0 0.40746 1 4274 4274 0.69038 0 1 54425 15110 34032 34050 62680 62680 0.04878816967925559 WPLCELDW 8 Unmodified _WPLCELDW_ 0 0 0 REV__ENST00000218789.9_3_13:111957869-111957989:+|nuORF REV__ENST00000218789.9_3_13:111957869-111957989:+|nuORF MSMS UPN48_class_I_Rep_1 5 531.2401123046875 2 531.241678 1060.4688 NaN NaN NaN NaN NaN NaN NaN 72.177 1 75.65 75.15 76.15 3.4732 0 0 0 0.40604 1 16923 16923 2.5775 0.73324 1 + 54426 21478 34033 34051 62681 62681 -0.059012637285604796 WPLFPSPFL 9 Unmodified _WPLFPSPFL_ 0 0 0 ENST00000335574.9_2_20:30157021-30157309:+|nuORF ENST00000335574.9_2_20:30157021-30157309:+|nuORF ENST00000335574.9_2_20:30157021-30157309:+|nuORF MSMS UPN48_class_I_Rep_1 5 552.2998657226562 2 552.299853 1102.58515 NaN NaN NaN NaN NaN NaN NaN 62.565 1 66.028 65.528 66.528 3.4625 0 0 0 0.39326 1 14013 14013 2.3027 0 1 54427 6205 34034 34052 62682 62682 0.03796422833647739 WPLGVLTRY 9 Unmodified _WPLGVLTRY_ 0 0 0 ENST00000496704.1_1_2:130899553-130900555:-|nuORF ENST00000496704.1_1_2:130899553-130900555:-|nuORF ENST00000496704.1_1_2:130899553-130900555:-|nuORF MSMS UPN48_class_I_Rep_1 5 552.8123779296875 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 17.792 1 21.318 20.818 21.818 3.5261 0 0 0 0.40038 1 1091 1091 0.6015 0 1 54428 7105 34035 34053 62683 62683 0.06510326093894037 WPLHLLLP 8 Unmodified _WPLHLLLP_ 0 0 0 ENST00000320849.8_1_20:34843710-34843899:+|nuORF ENST00000320849.8_1_20:34843710-34843899:+|nuORF ENST00000320849.8_1_20:34843710-34843899:+|nuORF MSMS UPN48_class_I_Rep_3 7 494.8026428222656 2 494.802563 987.590573 NaN NaN NaN NaN NaN NaN NaN 98.041 1 101.94 101.44 102.44 3.9022 0 0 0 0.40738 1 23230 23230 0.79363 0 1 54429 6150 34036 34054 62684 62684 0.09628146416127947 WPLLVFLL 8 Unmodified _WPLLVFLL_ 0 0 0 nc|ENSG00000160781|Q6TCH4-4|PAQR6;nc|ENSG00000160781|Q6TCH4-5|PAQR6;ENSG00000160781|ENST00000292291|PAQR6 nc|ENSG00000160781|Q6TCH4-4|PAQR6 nc|ENSG00000160781|Q6TCH4-4|PAQR6 MSMS UPN47_class_I_Rep_2 3 500.81671142578125 2 500.815139 999.615725 NaN NaN NaN NaN NaN NaN NaN 32.331 1 35.785 35.285 36.285 3.4547 0 0 0 0.40738 1 5587 5587 0.79363 0 1 54430 3886 34037 34055 62685 62685 0.11590201218712082 WPLPFKYF 8 Unmodified _WPLPFKYF_ 0 0 0 L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|177|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|177|3|anti-sense L1MEf_dup9035|chr13:75584616-75587103:+|1.215499680121001|0.0428232216458467|4.83|151.0|177|3|anti-sense MSMS UPN46_class_I_Rep_3 1 549.2952270507812 2 549.294571 1096.57459 NaN NaN NaN NaN NaN NaN NaN 65.514 1 65.514 65.014 66.014 0 0 0 0 0.40604 1 14812 14812 2.5775 0 1 54431 13333 34038 34056 62686 62686 0.03016440179226265 WPLPFWPL 8 Unmodified _WPLPFWPL_ 0 0 0 REV__ENST00000318080.6_1_9:131857548-131857632:-|nuORF REV__ENST00000318080.6_1_9:131857548-131857632:-|nuORF MSMS UPN47_class_I_Rep_1 2 528.2703857421875 2 528.289288 1054.56402 NaN NaN NaN NaN NaN NaN NaN 24.659 1 28.409 27.909 28.909 3.7495 0 0 0 0.40738 1 3261 3261 0.79363 0 1 + 54432 21726 34039 34057 62687 62687 0.038924575247847315 WPLSHVVF 8 Unmodified _WPLSHVVF_ 0 0 0 REV__L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|98|1|anti-sense REV__L1PA16_dup1170|chr2:63251791-63254401:+|1.1643801290499132|0.0462786443572018|4.65|151.0|98|1|anti-sense MSMS UPN46_class_I_Rep_3 1 492.7672119140625 2 492.76872 983.522887 NaN NaN NaN NaN NaN NaN NaN 59.791 1 59.791 59.291 60.291 0 0 0 0 0.4032 1 13239 13239 6.3541 0 1 + 54433 29337 34040 34058 62688 62688 0.030466964853189893 WPLVIKSI 8 Unmodified _WPLVIKSI_ 0 0 0 MER21C_dup2320|chr7:66387634-66388157:+|1.072253706606002|0.302045020814801|1.83|151.0|27|2|anti-sense MER21C_dup2320|chr7:66387634-66388157:+|1.072253706606002|0.302045020814801|1.83|151.0|27|2|anti-sense MER21C_dup2320|chr7:66387634-66388157:+|1.072253706606002|0.302045020814801|1.83|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_1 5 478.3026428222656 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 67.016 1 70.468 69.968 70.968 3.4516 0 0 0 0.40625 1 15369 15369 2.3027 0 1 54434 15886 34041 34059 62689 62689 0.11112726696262598 WPLVKAHL 8 Unmodified _WPLVKAHL_ 0 0 0 REV__ENSG00000134313.16,KIDINS220,chr2,-,I27.1,8748001,8749370|28|6.25|1|intron REV__ENSG00000134313.16,KIDINS220,chr2,-,I27.1,8748001,8749370|28|6.25|1|intron MSMS UPN48_class_I_Rep_2 6 482.5431823730469 2 482.292362 962.570172 NaN NaN NaN NaN NaN NaN NaN 34.916 1 38.589 38.089 39.089 3.6735 0 0 0 0.40738 1 5688 5688 0.79363 0 1 + 54435 19094 34042 34060 62690 62690 0.08738975756307354 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 476.82843017578125 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 22.18 1 22.18 21.68 22.68 0 0 0 0 0.40798 1 2595 2595 0 0 1 + 54436 31110 34043 34061 62691 62691 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 476.8143615722656 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 23.17 1 23.17 22.67 23.67 0 0 0 0 0.40798 1 2863 2863 0 0 1 + 54437 31110 34043 34061 62692 62692 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 476.8152160644531 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 23.54 1 23.54 23.04 24.04 0 0 0 0 0.40798 1 2969 2969 0 0 1 + 54438 31110 34043 34061 62693 62693 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 476.7991943359375 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 114.75 1 114.75 114.25 115.25 0 0 0 0 0.40798 1 28370 28370 0 0 1 + 54439 31110 34043 34061 62694 62694 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 476.7989807128906 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 119.8 1 119.8 119.3 120.3 0 0 0 0 0.40798 1 29793 29793 0 0 1 + 54440 31110 34043 34061 62695 62695 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 476.8153076171875 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 23.918 1 27.384 26.884 27.884 3.4655 0 0 0 0.40798 1 3086 3086 0 0 1 + 54441 31110 34043 34061 62696 62696 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 476.814453125 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 18.555 1 22.087 21.587 22.587 3.5313 0 0 0 0.40798 1 1269 1269 0 0 1 + 54442 31110 34043 34061 62697 62697 0.13798201218685335 WPLVLIVL 8 Unmodified _WPLVLIVL_ 0 0 0 REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense REV__MER11C_dup77|chr2:63996132-63997140:+|1.0063779510724096|0.0197418834927145|5.67|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 476.81549072265625 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 19.762 1 23.299 22.799 23.799 3.5378 0 0 0 0.40798 1 1555 1555 0 0 1 + 54443 31110 34043 34061 62698 62698 0.13798201218685335 WPLWPVRW 8 Unmodified _WPLWPVRW_ 0 0 0 REV__nc|ENSG00000204217|Q13873-2|BMPR2 REV__nc|ENSG00000204217|Q13873-2|BMPR2 MSMS UPN48_class_I_Rep_1 5 570.3104248046875 2 570.311087 1138.60762 NaN NaN NaN NaN NaN NaN NaN 28.406 1 31.963 31.463 32.463 3.5571 0 0 0 0.40625 1 3796 3796 2.3027 0 1 + 54444 21181 34044 34062 62699 62699 0.043860670219146414 WPMLVLRL 8 Unmodified _WPMLVLRL_ 0 0 0 REV__ENSG00000143443|ENST00000368926|C1orf56 REV__ENSG00000143443|ENST00000368926|C1orf56 MSMS UPN47_class_I_Rep_3 4 514.310546875 2 514.309698 1026.60484 NaN NaN NaN NaN NaN NaN NaN 62.529 1 65.699 65.199 66.199 3.1698 0 0 0 0.40404 1 14831 14831 5.2307 0 1 + 54445 19448 34045 34063 62700 62700 0.0926047557277343 WPMMHFPTE 9 Unmodified _WPMMHFPTE_ 0 0 0 HERVFH19-int_dup32|chr8:657562-657945:-|1.9789878628896729|0.2299125011675463|3.11|151.0|13|3|sense HERVFH19-int_dup32|chr8:657562-657945:-|1.9789878628896729|0.2299125011675463|3.11|151.0|13|3|sense HERVFH19-int_dup32|chr8:657562-657945:-|1.9789878628896729|0.2299125011675463|3.11|151.0|13|3|sense MSMS UPN47_class_I_Rep_3 4 588.2544555664062 2 588.254262 1174.49397 NaN NaN NaN NaN NaN NaN NaN 30.19 1 33.502 33.002 34.002 3.3116 0 0 0 0.40038 1 4978 4978 0.6015 0 1 54446 8124 34046 34064 62701 62701 -0.0862953219764222 WPMRKRLC 8 Unmodified _WPMRKRLC_ 0 0 0 REV__ENSG00000162592|ENST00000294600|CCDC27 REV__ENSG00000162592|ENST00000294600|CCDC27 MSMS UPN47_class_I_Rep_3 4 545.2733764648438 2 545.294056 1088.57356 NaN NaN NaN NaN NaN NaN NaN 26.736 1 30.08 29.58 30.58 3.3443 0 0 0 0.40738 1 3956 3956 0.79363 0.19213 1 + 54447 19929 34047 34065 62702 62702 0.0328157926703625 WPNLCLWW 8 Unmodified _WPNLCLWW_ 0 0 0 ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF MSMS UPN48_class_I_Rep_1 5 559.2687377929688 2 559.26803 1116.52151 NaN NaN NaN NaN NaN NaN NaN 19.882 1 23.42 22.92 23.92 3.5378 0 0 0 0.40738 1 1582 1582 0.79363 0.10326 1 54448 7230 34048 34066 62703 62703 -0.03209260875087239 WPNRKTILL 9 Unmodified _WPNRKTILL_ 0 0 0 REV__L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|43|2|sense REV__L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|43|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.8482055664062 2 570.848033 1139.68151 0.27288 0.00015577 0.25553 0.00014587 0.52841 0.00030164 570.8481515621002 32.595 0.090248 32.595 32.569 32.659 0 6 4 2 0 0 0 0.50088 1 5602 5602 0.52476 0 1 159920 + 54449 29057 34049 34067 62704 62704 0.11725990393620123 WPPNAHAPRG 10 Unmodified _WPPNAHAPRG_ 0 0 0 ENST00000591325.1_1_19:58790629-58791205:+|nuORF ENST00000591325.1_1_19:58790629-58791205:+|nuORF ENST00000591325.1_1_19:58790629-58791205:+|nuORF MSMS UPN46_class_I_Rep_3 1 551.7814331054688 2 551.780682 1101.54681 NaN NaN NaN NaN NaN NaN NaN 14.465 1 14.465 13.965 14.965 0 0 0 0 0.53105 1 639 639 0 0 1 54450 7621 34050 34068 62705 62705 9.92997167941212E-05 WPPPQPFK 8 Unmodified _WPPPQPFK_ 0 0 0 REV__MER21C_dup1099|chr3:123248760-123249539:-|1.1932509002753788|0.1049232580422292|3.51|151.0|43|2|anti-sense REV__MER21C_dup1099|chr3:123248760-123249539:-|1.1932509002753788|0.1049232580422292|3.51|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_3 4 498.7862548828125 2 498.76872 995.522887 NaN NaN NaN NaN NaN NaN NaN 31.797 1 35.096 34.596 35.596 3.2991 0 0 0 0.40738 1 5466 5466 0.79363 0.10326 1 + 54451 31219 34051 34069 62706 62706 0.02494696485325676 WPPVIKTH 8 Unmodified _WPPVIKTH_ 0 0 0 REV__nc|ENSG00000278845|Q9BRJ2|MRPL45 REV__nc|ENSG00000278845|Q9BRJ2|MRPL45 MSMS UPN48_class_I_Rep_1 5 489.2833251953125 2 489.281995 976.549437 NaN NaN NaN NaN NaN NaN NaN 34.401 1 37.916 37.416 38.416 3.5144 0 0 0 0.40738 1 5497 5497 0.79363 0 1 + 54452 21445 34052 34070 62707 62707 0.06022385376661532 WPPVPPALF 9 Unmodified _WPPVPPALF_ 0 0 0 L1PA15_dup7033|chr13:113539714-113541201:-|1.9233856409625143|0.3120927756187707|2.62|151.0|51|1|anti-sense L1PA15_dup7033|chr13:113539714-113541201:-|1.9233856409625143|0.3120927756187707|2.62|151.0|51|1|anti-sense L1PA15_dup7033|chr13:113539714-113541201:-|1.9233856409625143|0.3120927756187707|2.62|151.0|51|1|anti-sense MSMS UPN48_class_I_Rep_1 5 512.2855224609375 2 512.286746 1022.55894 NaN NaN NaN NaN NaN NaN NaN 47.532 1 51.054 50.554 51.554 3.5219 0 0 0 0.39326 1 9403 9403 2.3027 0.4585 1 54453 13970 34053 34071 62708 62708 0.048561536621718915 WPPYHYEL 8 Unmodified _WPPYHYEL_ 0 0 0 L1MEg_dup921|chr1:207333204-207335473:+|2.0179635754211365|0.1992568072294673|3.34|151.0|121|2|anti-sense L1MEg_dup921|chr1:207333204-207335473:+|2.0179635754211365|0.1992568072294673|3.34|151.0|121|2|anti-sense L1MEg_dup921|chr1:207333204-207335473:+|2.0179635754211365|0.1992568072294673|3.34|151.0|121|2|anti-sense MSMS UPN48_class_I_Rep_1 5 552.7610473632812 2 552.761092 1103.50763 NaN NaN NaN NaN NaN NaN NaN 111.66 1 115.29 114.79 115.79 3.6326 0 0 0 0.40738 1 27087 27087 0.79363 0 1 54454 13433 34054 34072 62709 62709 -0.039982151025242274 WPQLCNAY 8 Unmodified _WPQLCNAY_ 0 0 0 REV__ENST00000514179.5_1_5:130834202-130867847:-|nuORF REV__ENST00000514179.5_1_5:130834202-130867847:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.7266845703125 2 497.726195 993.437837 NaN NaN NaN NaN NaN NaN NaN 49.853 1 49.853 49.353 50.353 0 0 0 0 0.40364 1 10495 10495 5.7604 0.52976 1 + 54455 22758 34055 34073 62710 62710 -0.059144170428112375 WPQLIKLK 8 Unmodified _WPQLIKLK_ 0 0 0 REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|62|3|sense REV__ERVL-E-int_dup915|chr2:32384193-32386444:-|4.319142186728562|0.0243946551136331|7.47|151.0|62|3|sense MSMS UPN48_class_I_Rep_2 6 513.3264770507812 2 513.328945 1024.64334 NaN NaN NaN NaN NaN NaN NaN 88.246 1 91.974 91.474 92.474 3.7279 0 0 0 0.40738 1 21010 21010 0.79363 0 1 + 54456 23303 34056 34074 62711 62711 0.1320010447891491 WPQPEVLL 8 Unmodified _WPQPEVLL_ 0 0 0 REV__ENSG00000186666|ENST00000333924|BCDIN3D REV__ENSG00000186666|ENST00000333924|BCDIN3D MSMS UPN48_class_I_Rep_1 5 491.2733459472656 2 491.273835 980.533118 NaN NaN NaN NaN NaN NaN NaN 111.67 1 115.31 114.81 115.81 3.6326 0 0 0 0.40746 1 27091 27091 0.69038 0 1 + 54457 20900 34057 34075 62712 62712 0.04207259419899856 WPQREKGIFK 10 Unmodified _WPQREKGIFK_ 0 0 0 ENST00000404600.2_1_6:1514778-1515111:-|nuORF ENST00000404600.2_1_6:1514778-1515111:-|nuORF ENST00000404600.2_1_6:1514778-1515111:-|nuORF MSMS UPN48_class_I_Rep_2 6 430.2561950683594 3 430.24354 1287.70879 NaN NaN NaN NaN NaN NaN NaN 109.54 1 113.21 112.71 113.71 3.6715 0 0 0 0.53105 1 26081 26081 3.5871 0.95582 1 54458 6607 34058 34076 62713 62713 0.07644473933964946 WPRAARHLR 9 Unmodified _WPRAARHLR_ 0 0 0 REV__THE1D-int_dup2232|chr16:3083217-3084323:-|1.10767343688331|0.3757932810614989|1.56|148.0|52|3|anti-sense REV__THE1D-int_dup2232|chr16:3083217-3084323:-|1.10767343688331|0.3757932810614989|1.56|148.0|52|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.8397216796875 2 581.838865 1161.66318 0.50652 0.00029472 0.44257 0.0002575 0.94909 0.00055222 581.839056978051 108.76 0.29598 112.29 112.22 112.52 3.5382 42 31 2 0 0 0 0.46869 1 26643 26643 3.9444 0.3479 1 5112200 + 54459 31869 34059 34077 62714 62714 0.08881293262243162 WPRDSCST 8 Unmodified _WPRDSCST_ 0 0 0 REV__nc|ENSG00000198198|Q5T011-5|SZT2 REV__nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-MSMS UPN46_class_I_Rep_3 1 476.2018737792969 2 476.203084 950.391615 -0.32175 -0.00015322 -1.716 -0.00081719 -2.0378 -0.0009704 476.2020211249246 15.671 0.043502 15.671 15.653 15.697 0 5 4 2 0 0 0 0.82752 1 943 943 0.79363 0 1 15110 + 54460 21116 34060 34078 62715 62715 -0.08556481944879124 WPRHFEDGK 9 Unmodified _WPRHFEDGK_ 0 0 0 CON__Q3MHH8 CON__Q3MHH8 CON__Q3MHH8 MULTI-MSMS UPN48_class_I_Rep_3 7 586.2858276367188 2 586.285797 1170.55704 0.55838 0.00032737 -0.93848 -0.00055022 -0.3801 -0.00022285 586.2852554323215 67.927 0.10844 71.434 71.357 71.466 3.5077 9 8 2 0 0 0 0.48643 1 15536 15536 2.0598 0 1 62172 + 54461 651 34061 34079 62716 62716 -0.021415070937337077 WPRLPLPP 8 Unmodified _WPRLPLPP_ 0 0 0 REV__ENST00000409429.5_1_2:74783165-74783511:+|nuORF REV__ENST00000409429.5_1_2:74783165-74783511:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 487.7907409667969 2 488.292362 974.570172 0.15215 7.4293E-05 0.30959 0.00015117 0.46174 0.00022546 488.29252624970513 75.785 0.1636 79.188 79.119 79.282 3.4034 21 14 2 0 0 0 0.72333 1 18734 18734 0.79363 0 1 50335 + 54462 22180 34062 34080 62717 62717 0.0818697575632541 WPRMKFIY 8 Unmodified _WPRMKFIY_ 0 0 0 REV__ENSG00000165621|ENST00000541038|OXGR1 REV__ENSG00000165621|ENST00000541038|OXGR1 MSMS UPN48_class_I_Rep_3 7 570.80712890625 2 570.80478 1139.59501 NaN NaN NaN NaN NaN NaN NaN 55.798 1 59.354 58.854 59.854 3.5554 0 0 0 0.39819 1 11864 11864 8.5933 2.3875 1 + 54463 20125 34063 34081 62718 62718 0.03079287567402389 WPRQKIKP 8 Unmodified _WPRQKIKP_ 0 0 0 Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|38|3|sense Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|38|3|sense Tigger1_dup6261|chr8:53980346-53981754:+|1.8838971126124104|0.1477467005412358|3.67|151.0|38|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 527.3232421875 2 526.821818 1051.62908 -0.065361 -3.4433E-05 -0.0097721 -5.1482E-06 -0.075133 -3.9582E-05 526.821786467717 23.812 0.058901 23.812 23.76 23.818 0 11 6 2 0 0 0 0.82752 1 3045 3045 0.69038 0 1 42405 54464 33153 34064 34082 62719 62719 0.10533452050640335 WPRRPEGP 8 Unmodified _WPRRPEGP_ 0 0 0 REV__ENST00000591326.5_1_19:2078652-2090082:-|nuORF REV__ENST00000591326.5_1_19:2078652-2090082:-|nuORF MSMS UPN46_class_I_Rep_3 1 497.7541198730469 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 28.454 1 28.454 27.954 28.954 0 0 0 0 0.40738 1 4370 4370 0.79363 0 1 + 54465 23167 34065 34083 62720 62720 0.01743142568705025 WPRVWRKS 8 Unmodified _WPRVWRKS_ 0 0 0 ENST00000561494.5_1_16:22308825-22316709:+|nuORF ENST00000561494.5_1_16:22308825-22316709:+|nuORF ENST00000561494.5_1_16:22308825-22316709:+|nuORF MSMS UPN48_class_I_Rep_2 6 557.8163452148438 2 557.817067 1113.61958 NaN NaN NaN NaN NaN NaN NaN 22.343 1 25.989 25.489 26.489 3.6459 0 0 0 0.40604 1 2266 2266 2.5775 0.51773 1 54466 7460 34066 34084 62721 62721 0.06731683765110574 WPRWSAPRWEA 11 Unmodified _WPRWSAPRWEA_ 0 0 0 REV__ENST00000304164.8_1_2:192110269-192141637:+|nuORF REV__ENST00000304164.8_1_2:192110269-192141637:+|nuORF MSMS UPN48_class_I_Rep_1 5 481.241455078125 3 481.242311 1440.7051 NaN NaN NaN NaN NaN NaN NaN 107.07 1 110.7 110.2 111.2 3.6299 0 0 0 0.38417 1 25796 25796 1.2148 0.51716 1 + 54467 21682 34067 34085 62722 62722 0.00237804160133237 WPSLSLHPF 9 Unmodified _WPSLSLHPF_ 0 0 0 REV__Tigger1_dup7799|chrX:154070182-154070688:+|1.4177174296627508|0.0279395565306093|5.67|151.0|12|3|sense REV__Tigger1_dup7799|chrX:154070182-154070688:+|1.4177174296627508|0.0279395565306093|5.67|151.0|12|3|sense MSMS UPN48_class_I_Rep_2 6 542.2839965820312 2 542.284734 1082.55492 NaN NaN NaN NaN NaN NaN NaN 43.434 1 47.196 46.696 47.696 3.7617 0 0 0 0.38478 1 8161 8161 4.3292 0 1 + 54468 32528 34068 34086 62723 62723 0.016940641684641378 WPSPSNRRL 9 Unmodified _WPSPSNRRL_ 0 0 0 REV__nc|ENSG00000171988|Q15652-2|JMJD1C REV__nc|ENSG00000171988|Q15652-2|JMJD1C MSMS UPN48_class_I_Rep_2 6 557.2843627929688 2 556.801614 1111.58868 NaN NaN NaN NaN NaN NaN NaN 94.381 1 98.157 97.657 98.657 3.7761 0 0 0 0.4007 1 22440 22440 0.52476 0 1 + 54469 20430 34069 34087 62724 62724 0.03734485660243081 WPSTSFWG 8 Unmodified _WPSTSFWG_ 0 0 0 HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|97|3|sense;HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|154|3|sense;HERV9-int_dup188|chrY:13889410-13895921:+|1.2542554693126706|0.369908493916328|1.76|94.0|7|1|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|97|3|sense HERV9N-int_dup116|chr9:76490533-76495145:-|3.698813775191886|0.1706703780823836|4.44|151.0|97|3|sense MSMS UPN47_class_I_Rep_2 3 484.2269592285156 2 484.21906 966.423567 NaN NaN NaN NaN NaN NaN NaN 36.964 1 40.363 39.863 40.863 3.3988 0 0 0 0.40604 1 6994 6994 2.5775 0 1 54470 8072 34070 34088 62725 62725 -0.06098746199427296 WPVAKSGEI 9 Unmodified _WPVAKSGEI_ 0 0 0 REV__nc|ENSG00000171302|Q8WVQ1-2|CANT1 REV__nc|ENSG00000171302|Q8WVQ1-2|CANT1 MULTI-MSMS UPN47_class_I_Rep_1 2 493.7685241699219 2 493.768917 985.523281 -0.35093 -0.00017328 0.03022 1.4922E-05 -0.32071 -0.00015836 493.76881063665405 13.876 0.20338 17.333 17.236 17.44 3.457 30 24 2 0 0 0 0.50015 1 438 438 0.6015 0 1 23818 + 54471 20400 34071 34089 62726 62726 0.029940714145254788 WPVASRRGV 9 Unmodified _WPVASRRGV_ 0 0 0 REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF MSMS UPN48_class_I_Rep_1 5 514.30419921875 2 514.293425 1026.5723 NaN NaN NaN NaN NaN NaN NaN 30.509 1 34.051 33.551 34.551 3.542 0 0 0 0.40038 1 4388 4388 0.6015 0 1 + 54472 22304 34072 34090 62727 62727 0.06007404494130242 WPVFFFFA 8 Unmodified _WPVFFFFA_ 0 0 0 HERVIP10FH-int_dup365|chr19:57803911-57804541:-|1.3258350730775432|0.1385111935667479|3.26|151.0|40|3|anti-sense HERVIP10FH-int_dup365|chr19:57803911-57804541:-|1.3258350730775432|0.1385111935667479|3.26|151.0|40|3|anti-sense HERVIP10FH-int_dup365|chr19:57803911-57804541:-|1.3258350730775432|0.1385111935667479|3.26|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_1 5 530.3155517578125 2 530.768189 1059.52182 NaN NaN NaN NaN NaN NaN NaN 31.207 1 34.741 34.241 35.241 3.5342 0 0 0 0.40738 1 4587 4587 0.79363 0 1 54473 8231 34073 34091 62728 62728 -0.005555178835720653 WPVHRLPKLSK 11 Unmodified _WPVHRLPKLSK_ 0 0 0 REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 454.27947998046875 3 454.278585 1359.81392 NaN NaN NaN NaN NaN NaN NaN 59.171 1 62.588 62.088 63.088 3.4171 0 0 0 0.38417 1 13719 13719 0.50596 0.23694 1 + 54474 31154 34074 34092 62729 62729 0.14841015130377855 WPVHRLPKLSK 11 Unmodified _WPVHRLPKLSK_ 0 0 0 REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2796325683594 3 454.278585 1359.81392 NaN NaN NaN NaN NaN NaN NaN 59.308 1 62.726 62.226 63.226 3.4171 0 0 0 0.38417 1 13762 13762 0.50596 0.051438 1 + 54475 31154 34074 34092 62730 62730 0.14841015130377855 WPVHRLPKLSK 11 Unmodified _WPVHRLPKLSK_ 0 0 0 REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_1 2 454.27972412109375 3 454.278585 1359.81392 NaN NaN NaN NaN NaN NaN NaN 60.41 1 63.808 63.308 64.308 3.3982 0 0 0 0.38417 1 14097 14097 0.50596 0 1 + 54476 31154 34074 34092 62731 62731 0.14841015130377855 WPVHRLPKLSK 11 Unmodified _WPVHRLPKLSK_ 0 0 0 REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense REV__MER20_dup16276|chr21:34870402-34870609:+|2.317078677172127|0.0165502331928967|7.13|151.0|16|2|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2796325683594 3 454.278585 1359.81392 NaN NaN NaN NaN NaN NaN NaN 59.819 1 62.984 62.484 63.484 3.1651 0 0 0 0.38417 1 14003 14003 0.50596 0.34663 1 + 54477 31154 34074 34092 62732 62732 0.14841015130377855 WPVLLIEF 8 Unmodified _WPVLLIEF_ 0 0 0 REV__HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|39|3|sense REV__HERVK22-int_dup148|chr7:107389260-107390855:+|1.3020021100207329|0.0379352697438564|5.1|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 508.7813720703125 2 508.794404 1015.57425 NaN NaN NaN NaN NaN NaN NaN 14.813 1 18.2 17.7 18.7 3.3871 0 0 0 0.40604 1 657 657 2.5775 0 1 + 54478 23808 34075 34093 62733 62733 0.06709020459391013 WPVPLGPYY 9 Unmodified _WPVPLGPYY_ 0 0 0 HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|316|3|anti-sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|316|3|anti-sense HERV9-int_dup99|chr6:38616972-38622531:+|1.043609152411341|0.0859036720628391|3.6|150.0|316|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 546.2810668945312 2 546.28166 1090.54877 -0.14086 -7.695E-05 -0.19119 -0.00010444 -0.33205 -0.00018139 546.2815250409631 33.692 1.0099 36.966 36.592 37.602 3.2748 133 70 2 0 0 0 0.37662 2 6124 6124;6167 9.3474 0.75416 1 569390 54479 8088 34076 34094 62734;62735 62734 0.00711545936951552 WPVPMGYINY 10 Unmodified _WPVPMGYINY_ 0 0 0 REV__ENST00000570205.1_1_15:83226389-83240190:-|nuORF REV__ENST00000570205.1_1_15:83226389-83240190:-|nuORF MSMS UPN48_class_I_Rep_2 6 620.2982788085938 2 620.296985 1238.57942 NaN NaN NaN NaN NaN NaN NaN 58.296 1 61.795 61.295 62.295 3.4987 0 0 0 0.53105 1 12684 12684 1.6526 0 1 + 54480 23087 34077 34095 62736 62736 -0.03033043740310859 WPVPPSVE 8 Unmodified _WPVPPSVE_ 0 0 0 REV__ENST00000551000.1_1_12:57871422-57871623:-|nuORF REV__ENST00000551000.1_1_12:57871422-57871623:-|nuORF MSMS UPN46_class_I_Rep_3 1 455.73687744140625 2 455.737086 909.459619 NaN NaN NaN NaN NaN NaN NaN 96.511 1 96.511 96.011 97.011 0 0 0 0 0.40604 1 23468 23468 2.5775 0 1 + 54481 22957 34078 34096 62737 62737 0.0012671097742895654 WPVPQFIN 8 Unmodified _WPVPQFIN_ 0 0 0 nc|ENSG00000167524|Q96LW2-2|RSKR;nc|ENSG00000167524|Q96LW2-3|RSKR;ENSG00000258472|ENST00000531839|unknown;nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR nc|ENSG00000167524|Q96LW2-2|RSKR nc|ENSG00000167524|Q96LW2-2|RSKR MSMS UPN48_class_I_Rep_2 6 500.7799072265625 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 30.703 1 34.339 33.839 34.839 3.6351 0 0 0 0.40738 1 4531 4531 0.79363 0 1 54482 4306 34079 34097 62738 62738 0.018023926226987896 WPVPTLVV 8 Unmodified _WPVPTLVV_ 0 0 0 REV__ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|133|2|anti-sense REV__ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|133|2|anti-sense MSMS UPN46_class_I_Rep_3 1 455.5794372558594 2 455.773471 909.53239 NaN NaN NaN NaN NaN NaN NaN 70.123 1 70.123 69.623 70.623 0 0 0 0 0.40604 1 16101 16101 2.5775 1.7838 1 + 54483 23261 34080 34098 62739 62739 0.07400464770853432 WPVRPAAL 8 Unmodified _WPVRPAAL_ 0 0 0 ENSG00000064201.16,TSPAN32,chr11,+,I8.1,2310019,2313653|77|15.44|4|intron;ENSG00000064201.16,TSPAN32,chr11,+,I8.1,2310019,2313653|77|15.44|2|intron;ENSG00000064201.16,TSPAN32,chr11,+,I8.1,2310019,2313653|77|15.44|1|intron ENSG00000064201.16,TSPAN32,chr11,+,I8.1,2310019,2313653|77|15.44|4|intron ENSG00000064201.16,TSPAN32,chr11,+,I8.1,2310019,2313653|77|15.44|4|intron MSMS UPN48_class_I_Rep_1 5 455.2684326171875 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 115.57 1 119.2 118.7 119.7 3.6282 0 0 0 0.40738 1 28118 28118 0.79363 0 1 54484 987 34081 34099 62740 62740 0.06530116205169634 WPWFFSLF 8 Unmodified _WPWFFSLF_ 0 0 0 REV__L1M4_dup18460|chr17:82536178-82537003:-|1.333899481316265|0.0234051172949172|5.83|151.0|52|3|anti-sense REV__L1M4_dup18460|chr17:82536178-82537003:-|1.333899481316265|0.0234051172949172|5.83|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_3 7 564.7980346679688 2 565.278921 1128.54329 NaN NaN NaN NaN NaN NaN NaN 40.521 1 44.172 43.672 44.672 3.6509 0 0 0 0.40625 1 7216 7216 2.3027 0 1 + 54485 24406 34082 34100 62741 62741 -0.015841328548731326 WPWGAWHL 8 Unmodified _WPWGAWHL_ 0 0 0 ENST00000483788.1_1_10:97397159-97402789:-|nuORF ENST00000483788.1_1_10:97397159-97402789:-|nuORF ENST00000483788.1_1_10:97397159-97402789:-|nuORF MSMS UPN48_class_I_Rep_3 7 526.7590942382812 2 526.758687 1051.50282 NaN NaN NaN NaN NaN NaN NaN 113.42 1 117.07 116.57 117.57 3.6568 0 0 0 0.40581 1 26967 26967 2.8892 0.82947 1 54486 7014 34083 34101 62742 62742 -0.020870544546369274 WPWLAEKR 8 Unmodified _WPWLAEKR_ 0 0 0 REV__MLT1D_dup18062|chr17:48870126-48870340:-|1.0006118407869131|0.4578595664630189|1.13|151.0|3|1|sense REV__MLT1D_dup18062|chr17:48870126-48870340:-|1.0006118407869131|0.4578595664630189|1.13|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 543.29736328125 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 32.627 1 36.277 35.777 36.777 3.6497 0 0 0 0.40738 1 5058 5058 0.79363 0 1 + 54487 31673 34084 34102 62743 62743 0.04289172779635919 WPWLPQFDL 9 Unmodified _WPWLPQFDL_ 0 0 0 REV__THE1B-int_dup3834|chr15:76429279-76430857:+|1.3479975768188177|0.0202510132334174|6.06|151.0|6|1|sense REV__THE1B-int_dup3834|chr15:76429279-76430857:+|1.3479975768188177|0.0202510132334174|6.06|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 601.3056640625 2 601.305667 1200.59678 NaN NaN NaN NaN NaN NaN NaN 42.519 1 46.277 45.777 46.777 3.7579 0 0 0 0.39326 1 7881 7881 2.3027 0.4585 1 + 54488 32270 34085 34103 62744 62744 0.0045061985699703655 WPWPLCQW 8 Unmodified _WPWPLCQW_ 0 0 0 ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF MSMS UPN47_class_I_Rep_1 2 558.2601318359375 2 558.260205 1114.50586 NaN NaN NaN NaN NaN NaN NaN 39.241 1 42.906 42.406 43.406 3.6652 0 0 0 0.40364 1 7652 7652 5.7604 2.4791 1 54489 7337 34086 34104 62745 62745 -0.04681547392169705 WPWPLCQW 8 Unmodified _WPWPLCQW_ 0 0 0 ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF MSMS UPN47_class_I_Rep_1 2 558.2584228515625 2 558.260205 1114.50586 NaN NaN NaN NaN NaN NaN NaN 39.347 1 43.013 42.513 43.513 3.6659 0 0 0 0.40364 1 7685 7685 5.7604 0.52976 1 54490 7337 34086 34104 62746 62746 -0.04681547392169705 WPWPLCQW 8 Unmodified _WPWPLCQW_ 0 0 0 ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.8046264648438 2 558.260205 1114.50586 0.045236 2.5253E-05 -1.3875 -0.0007746 -1.3423 -0.00074935 558.2593823908295 39.551 0.16947 42.929 42.806 42.976 3.3785 10 9 2 0 0 0 0.82752 1 7781 7781 2.5775 0.27475 1 80635 54491 7337 34086 34104 62747 62747 -0.04681547392169705 WPWPLCQW 8 Unmodified _WPWPLCQW_ 0 0 0 ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF ENST00000537320.5_1_9:117848732-117848777:-|nuORF MSMS UPN47_class_I_Rep_2 3 558.259765625 2 558.260205 1114.50586 NaN NaN NaN NaN NaN NaN NaN 39.775 1 43.146 42.646 43.646 3.3712 0 0 0 0.40364 1 7849 7849 5.7604 0.52976 1 54492 7337 34086 34104 62748 62748 -0.04681547392169705 WPWWQWWQWWW 11 Unmodified _WPWWQWWQWWW_ 0 0 0 L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|191|1|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|191|1|anti-sense L1MA4A_dup5338|chr15:49908252-49912828:+|6.961671133060263|0.0223876287465534|8.28|151.0|191|1|anti-sense MSMS UPN48_class_I_Rep_2 6 620.94580078125 3 620.945606 1859.81499 NaN NaN NaN NaN NaN NaN NaN 42.573 1 46.331 45.831 46.831 3.7579 0 0 0 0.38417 1 7897 7897 0 0 1 54493 9821 34087 34105 62749 62749 -0.0805277050069435 WPYEDDDDD 9 Unmodified _WPYEDDDDD_ 0 0 0 REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272 REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272 MSMS UPN47_class_I_Rep_3 4 585.1993408203125 2 585.198916 1168.38328 NaN NaN NaN NaN NaN NaN NaN 118.2 1 121.62 121.12 122.12 3.4238 0 0 0 0.4007 1 29148 29148 0.52476 0.12405 1 + 54494 21449 34088 34106 62750 62750 -0.1941780217118776 WPYLCIYNQ 9 Unmodified _WPYLCIYNQ_ 0 0 0 REV__L1MC4a_dup117|chr1:41086887-41087937:+|1.0220558807349365|0.0303273456553373|5.07|151.0|37|3|sense REV__L1MC4a_dup117|chr1:41086887-41087937:+|1.0220558807349365|0.0303273456553373|5.07|151.0|37|3|sense MSMS UPN47_class_I_Rep_1 2 600.2821044921875 2 600.281334 1198.54812 NaN NaN NaN NaN NaN NaN NaN 54.998 1 58.499 57.999 58.999 3.5014 0 0 0 0.39428 1 12449 12449 2.0598 0 1 + 54495 26971 34089 34107 62751 62751 -0.04321616774427639 WPYWRRNWHLH 11 Unmodified _WPYWRRNWHLH_ 0 0 0 REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 550.9453735351562 3 550.944488 1649.81163 0.38716 0.00021331 0.59701 0.00032892 0.98417 0.00054222 550.9449025064378 42.349 0.47233 42.349 42.02 42.492 0 75 53 2 0 0 0 0.68583 1 8352 8352 0 0 1 188000 + 54496 30670 34090 34108 62752 62752 0.01271979445323268 WPYWRRNWHLH 11 Unmodified _WPYWRRNWHLH_ 0 0 0 REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense REV__L1PBa1_dup133|chr5:66100329-66101972:+|3.5389034897429417|0.0601524174565884|5.88|151.0|38|3|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 550.6107788085938 3 550.944488 1649.81163 0.39076 0.00021529 0.15322 8.4415E-05 0.54398 0.0002997 550.9446410505919 41.605 0.16706 41.605 41.541 41.708 0 32 20 2 0 0 0 22.551 1 8160 8160 0 0 1 154700 + 54497 30670 34090 34108 62753 62753 0.01271979445323268 WQCRLVGRL 9 Unmodified _WQCRLVGRL_ 0 0 0 REV__L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|118|3|anti-sense REV__L1MA4A_dup3296|chr9:87692992-87695016:-|1.706363273165733|0.2335810519013144|2.87|151.0|118|3|anti-sense MSMS UPN48_class_I_Rep_3 7 565.8158569335938 2 565.81621 1129.61787 NaN NaN NaN NaN NaN NaN NaN 20.658 1 24.324 23.824 24.824 3.6667 0 0 0 0.39428 1 1801 1801 2.0598 0 1 + 54498 25273 34091 34109 62754 62754 0.058243066848490344 WQDIYRIQ 8 Unmodified _WQDIYRIQ_ 0 0 0 REV__L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|94|3|sense REV__L1MC3_dup12462|chr20:8350723-8354025:+|2.1131861010280715|0.0079361774805994|8.06|151.0|94|3|sense MSMS UPN47_class_I_Rep_1 2 561.664306640625 2 561.290548 1120.56654 NaN NaN NaN NaN NaN NaN NaN 32.981 1 36.694 36.194 37.194 3.7131 0 0 0 0.40643 1 5748 5748 2.0598 0 1 + 54499 26721 34092 34110 62755 62755 0.011082611918027396 WQDRPKFKFRK 11 Unmodified _WQDRPKFKFRK_ 0 0 0 L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|41|2|sense L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|41|2|sense L1PA7_dup11301|chr14:35841595-35844653:-|1.2684927145674196|0.023999079809157|5.72|150.0|41|2|sense MSMS UPN48_class_I_Rep_2 6 512.6245727539062 3 512.624643 1534.8521 NaN NaN NaN NaN NaN NaN NaN 102.52 1 106.23 105.73 106.73 3.7108 0 0 0 0.38417 1 24278 24278 0.094841 0 1 54500 14720 34093 34111 62756 62756 0.10606901045025552 WQDRYRNKYWY 11 Unmodified _WQDRYRNKYWY_ 0 0 0 REV__L1PB1_dup3358|chr4:105168590-105170143:-|1.6594071184348536|0.0633415582084924|4.71|151.0|4|1|sense REV__L1PB1_dup3358|chr4:105168590-105170143:-|1.6594071184348536|0.0633415582084924|4.71|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 559.9371948242188 3 559.935546 1676.78481 NaN NaN NaN NaN NaN NaN NaN 55.001 1 55.001 54.501 55.501 0 0 0 0 0.38417 1 11939 11939 0.094841 0 1 + 54501 30383 34094 34112 62757 62757 -0.026511739565194148 WQEIAPGNTDA 11 Unmodified _WQEIAPGNTDA_ 0 0 0 ENSG00000161813.22,LARP4,chr12,+,I16.1,50441644,50453459|32|8.62|4|intron;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4 ENSG00000161813.22,LARP4,chr12,+,I16.1,50441644,50453459|32|8.62|4|intron ENSG00000161813.22,LARP4,chr12,+,I16.1,50441644,50453459|32|8.62|4|intron MSMS UPN48_class_I_Rep_2 6 601.2794799804688 2 601.277835 1200.54112 NaN NaN NaN NaN NaN NaN NaN 41.571 1 45.322 44.822 45.822 3.7508 0 0 0 0.38417 1 7604 7604 0.96228 0.16864 1 54502 3907 34095 34113 62758 62758 -0.051132581212641526 WQERRFRR 8 Unmodified _WQERRFRR_ 0 0 0 REV__ENST00000326172.9_1_3:101574023-101574582:+|nuORF REV__ENST00000326172.9_1_3:101574023-101574582:+|nuORF MSMS UPN47_class_I_Rep_1 2 617.3386840820312 2 617.33923 1232.66391 NaN NaN NaN NaN NaN NaN NaN 73.667 1 77.053 76.553 77.553 3.3861 0 0 0 0.40753 1 18097 18097 0.6015 0.076735 1 + 54503 21762 34096 34114 62759 62759 0.05688087911312323 WQFLKKKTT 9 Unmodified _WQFLKKKTT_ 0 0 0 Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense Tigger1_dup3421|chr4:123104055-123106431:+|1.0693674233678694|0.0294273682156003|5.18|149.0|86|1|anti-sense MSMS UPN47_class_I_Rep_2 3 590.3480834960938 2 590.347866 1178.68118 NaN NaN NaN NaN NaN NaN NaN 82.542 1 85.941 85.441 86.441 3.3984 0 0 0 0.40038 1 20574 20574 0.6015 0 1 54504 33078 34097 34115 62760 62760 0.09898570673749418 WQFVSLEF 8 Unmodified _WQFVSLEF_ 0 0 0 L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|166|2|anti-sense L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|166|2|anti-sense L1ME1_dup5138|chr2:230769969-230772487:+|5.568265046870738|0.0511341300500574|6.77|151.0|166|2|anti-sense MSMS UPN48_class_I_Rep_2 6 528.2557983398438 2 528.263468 1054.51238 NaN NaN NaN NaN NaN NaN NaN 73.624 1 77.202 76.702 77.702 3.5779 0 0 0 0.33946 1 17295 17295 24.674 0 1 54505 12417 34098 34116 62761 62761 -0.012693309597580082 WQGIKLLIVH 10 Unmodified _WQGIKLLIVH_ 0 0 0 REV__L1MA4A_dup4417|chr11:72880887-72881853:+|1.9937998010068168|0.0141294370754444|7.14|151.0|4|1|sense REV__L1MA4A_dup4417|chr11:72880887-72881853:+|1.9937998010068168|0.0141294370754444|7.14|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 603.8718872070312 2 603.871508 1205.72846 NaN NaN NaN NaN NaN NaN NaN 78.503 1 82.124 81.624 82.624 3.6216 0 0 0 0.53105 1 18584 18584 1.6526 0 1 + 54506 25307 34099 34117 62762 62762 0.13382849944741793 WQGRRAKG 8 Unmodified _WQGRRAKG_ 0 0 0 L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|78|2|sense L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|78|2|sense L1MA5_dup3459|chr12:107534229-107537531:+|1.773096245078171|0.0118290746082725|7.23|149.0|78|2|sense MSMS UPN47_class_I_Rep_3 4 479.7696228027344 2 479.770117 957.525681 NaN NaN NaN NaN NaN NaN NaN 12.292 1 15.667 15.167 16.167 3.3753 0 0 0 0.40738 1 56 56 0.79363 0 1 54507 9903 34100 34118 62763 62763 0.045219646628424925 WQGYRRKL 8 Unmodified _WQGYRRKL_ 0 0 0 REV__ENSG00000144821|ENST00000693548|MYH15 REV__ENSG00000144821|ENST00000693548|MYH15 MSMS UPN48_class_I_Rep_2 6 553.8140258789062 2 553.814525 1105.6145 NaN NaN NaN NaN NaN NaN NaN 60.175 1 63.662 63.162 64.162 3.4868 0 0 0 0.40404 1 13265 13265 5.2307 0 1 + 54508 19496 34101 34119 62764 62764 0.06591379902511108 WQHLHDHR 8 Unmodified _WQHLHDHR_ 0 0 0 REV__ENST00000317447.8_1_16:89167661-89169148:+|nuORF REV__ENST00000317447.8_1_16:89167661-89169148:+|nuORF MSMS UPN47_class_I_Rep_3 4 565.2611694335938 2 564.775931 1127.53731 NaN NaN NaN NaN NaN NaN NaN 24.252 1 27.603 27.103 28.103 3.3509 0 0 0 0.40746 1 3223 3223 0.69038 0 1 + 54509 21720 34102 34120 62765 62765 -0.02135838313847671 WQIHRQRA 8 Unmodified _WQIHRQRA_ 0 0 0 THE1D-int_dup1601|chrX:80693464-80694958:+|1.0649907099017122|0.242176109672613|2.14|151.0|41|3|sense THE1D-int_dup1601|chrX:80693464-80694958:+|1.0649907099017122|0.242176109672613|2.14|151.0|41|3|sense THE1D-int_dup1601|chrX:80693464-80694958:+|1.0649907099017122|0.242176109672613|2.14|151.0|41|3|sense MSMS UPN48_class_I_Rep_2 6 547.7998046875 2 547.801949 1093.58934 NaN NaN NaN NaN NaN NaN NaN 33.974 1 37.634 37.134 38.134 3.6607 0 0 0 0.40625 1 5423 5423 2.3027 0.24298 1 54510 32954 34103 34121 62766 62766 0.046293250999497104 WQILLILI 8 Unmodified _WQILLILI_ 0 0 0 Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|1|1|sense Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|1|1|sense Charlie1a_dup2932|chr8:100932609-100933078:-|2.1287694856475947|0.1205409698292913|4.14|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 506.3328552246094 2 506.333696 1010.65284 NaN NaN NaN NaN NaN NaN NaN 106.23 1 109.92 109.42 110.42 3.6834 0 0 0 0.40746 1 25118 25118 0.69038 0 1 54511 469 34104 34122 62767 62767 0.14793872764482785 WQIPNALIK 9 Unmodified _WQIPNALIK_ 0 0 0 REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|57|2|sense REV__L1PA8A_dup668|chr4:106085307-106089037:+|2.273411813452221|0.3017621809735819|2.91|151.0|57|2|sense MSMS UPN48_class_I_Rep_3 7 541.8215942382812 2 541.821484 1081.62842 NaN NaN NaN NaN NaN NaN NaN 46.695 1 50.332 49.832 50.832 3.6363 0 0 0 0.39518 1 9085 9085 1.8442 0 1 + 54512 30282 34105 34123 62768 62768 0.09086612610917655 WQIQFFIF 8 Unmodified _WQIQFFIF_ 0 0 0 REV__L1MEd_dup12484|chr9:125873217-125874468:+|1.8536988505861105|0.036442662038724|5.67|151.0|52|1|anti-sense REV__L1MEd_dup12484|chr9:125873217-125874468:+|1.8536988505861105|0.036442662038724|5.67|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_3 4 564.7982788085938 2 564.797478 1127.5804 NaN NaN NaN NaN NaN NaN NaN 37.006 1 40.253 39.753 40.753 3.247 0 0 0 0.40738 1 7045 7045 0.79363 0 1 + 54513 28511 34106 34124 62769 62769 0.02171538690890884 WQIQFFIF 8 Unmodified _WQIQFFIF_ 0 0 0 REV__L1MEd_dup12484|chr9:125873217-125874468:+|1.8536988505861105|0.036442662038724|5.67|151.0|52|1|anti-sense REV__L1MEd_dup12484|chr9:125873217-125874468:+|1.8536988505861105|0.036442662038724|5.67|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.7969360351562 2 564.797478 1127.5804 NaN NaN NaN NaN NaN NaN NaN 31.305 1 35.007 34.507 35.507 3.7015 0 0 0 0.40746 1 4616 4616 0.69038 0 1 + 54514 28511 34106 34124 62770 62770 0.02171538690890884 WQIQRFPW 8 Unmodified _WQIQRFPW_ 0 0 0 ENST00000399220.2_1_3:39307986-39321514:-|nuORF ENST00000399220.2_1_3:39307986-39321514:-|nuORF ENST00000399220.2_1_3:39307986-39321514:-|nuORF MSMS UPN48_class_I_Rep_2 6 580.803466796875 2 580.803626 1159.5927 NaN NaN NaN NaN NaN NaN NaN 114.52 1 118.18 117.68 118.68 3.6616 0 0 0 0.40738 1 27375 27375 0.79363 0 1 54515 6588 34107 34125 62771 62771 0.01928575153942802 WQITWLVL 8 Unmodified _WQITWLVL_ 0 0 0 ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|57|2|sense ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|57|2|sense ERVL-E-int_dup6530|chr13:21311505-21314276:+|3.6980249026974494|0.0189673053607729|7.61|151.0|57|2|sense MSMS UPN48_class_I_Rep_3 7 529.7291870117188 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 18.712 1 22.3 21.8 22.8 3.5874 0 0 0 0.40738 1 1282 1282 0.79363 0 1 54516 7762 34108 34126 62772 62772 0.0695582520793323 WQKHTLGQY 9 Unmodified _WQKHTLGQY_ 0 0 0 HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|329|2|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|329|2|anti-sense HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|329|2|anti-sense MSMS UPN48_class_I_Rep_3 7 580.7936401367188 2 580.795998 1159.57744 NaN NaN NaN NaN NaN NaN NaN 66.825 1 70.332 69.832 70.832 3.5077 0 0 0 0.39428 1 15208 15208 2.0598 0 1 54517 7996 34109 34127 62773 62773 0.004036635660895627 WQKKKAVS 8 Unmodified _WQKKKAVS_ 0 0 0 ENSG00000091972|ENST00000315711|CD200;nc|ENSG00000091972|P41217|CD200;nc|ENSG00000091972|P41217-3|CD200 ENSG00000091972|ENST00000315711|CD200 ENSG00000091972|ENST00000315711|CD200 MULTI-MSMS UPN48_class_I_Rep_2 6 487.7914123535156 2 487.792727 973.5709 0.24907 0.00012149 -1.1788 -0.00057499 -0.92968 -0.00045349 487.79185571128846 74.755 0.77141 78.345 77.885 78.656 3.59 135 85 2 0 0 0 0.82752 1 17537 17537 0.79363 0 1 213500 54518 1381 34110 34128 62774 62774 0.08305770405377189 WQKLIVWKFPP 11 Unmodified _WQKLIVWKFPP_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MSMS UPN46_class_I_Rep_3 1 481.6182861328125 3 481.283336 1440.82818 0.27022 0.00013005 0.32066 0.00015433 0.59087 0.00028438 481.2834448568705 98.905 0.15599 98.905 98.805 98.961 0 46 18 3 0 0 0 0.68024 1 24095 24095 0.50596 0 1 707760 54519 1287 34111 34129 62775 62775 0.1253966755868987 WQKLIVWKFPP 11 Unmodified _WQKLIVWKFPP_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 481.283336 1440.82818 0.27022 0.00013005 0.32066 0.00015433 0.59087 0.00028438 481.2834448568705 98.905 0.15599 98.905 98.805 98.961 0 -0.12645 6.4038E-05 NaN 0.50596 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 707760 54520 1287 34111 34129 0.1253966755868987 WQKLIVWKFPP 11 Unmodified _WQKLIVWKFPP_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MATCH UPN47_class_I_Rep_3 4 3 481.283336 1440.82818 0.15782 7.5957E-05 0.20836 0.00010028 0.36618 0.00017624 481.2833567160186 95.628 0.20239 99.037 98.945 99.147 3.4095 0.005377 -9.8102E-05 NaN 0.50596 44 27 2 NaN NaN NaN NaN 0 NaN NaN 0 132680 54521 1287 34111 34129 0.1253966755868987 WQKLIVWKFPP 11 Unmodified _WQKLIVWKFPP_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MATCH UPN48_class_I_Rep_1 5 3 481.283336 1440.82818 0.11938 5.7457E-05 -0.016141 -7.7685E-06 0.10324 4.9688E-05 481.28326284949196 95.536 0.078896 99.153 99.129 99.208 3.6167 0.12108 -0.00042225 NaN 0.50596 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 111680 54522 1287 34111 34129 0.1253966755868987 WQKLSKSTY 9 Unmodified _WQKLSKSTY_ 0 0 0 L1M4_dup13780|chr11:46786068-46786949:+|1.2513427792121825|0.1050539852479397|3.57|151.0|1|1|sense L1M4_dup13780|chr11:46786068-46786949:+|1.2513427792121825|0.1050539852479397|3.57|151.0|1|1|sense L1M4_dup13780|chr11:46786068-46786949:+|1.2513427792121825|0.1050539852479397|3.57|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.8065795898438 2 570.806031 1139.59751 0.46813 0.00026721 0.18342 0.0001047 0.65155 0.00037191 570.8062294913091 55.806 0.4464 59.307 59.062 59.509 3.5014 48 28 2 0 0 0 0.49026 1 11969 11969 1.6526 0 1 125490 54523 8837 34112 34130 62776 62776 0.03329414506060857 WQKPCGAE 8 Unmodified _WQKPCGAE_ 0 0 0 L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|3|1|sense L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|3|1|sense L1MA2_dup5527|chr11:74894979-74899963:+|6.181557594194707|0.2063357464824709|4.9|151.0|3|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 459.7108459472656 2 459.710545 917.406537 0.21262 9.7746E-05 -0.8171 -0.00037563 -0.60448 -0.00027788 459.7104407328029 100.76 0.34665 100.76 100.71 101.05 0 99 37 6 0 0 0 0.82752 1 24645 24645 2.5775 0 1 510500 54524 9403 34113 34131 62777 62777 -0.05546990076891234 WQKRRRAN 8 Unmodified _WQKRRRAN_ 0 0 0 MSTA_dup7888|chr6:151412571-151412992:-|1.0493748349420833|0.1237756951819683|3.08|151.0|25|3|anti-sense MSTA_dup7888|chr6:151412571-151412992:-|1.0493748349420833|0.1237756951819683|3.08|151.0|25|3|anti-sense MSTA_dup7888|chr6:151412571-151412992:-|1.0493748349420833|0.1237756951819683|3.08|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_3 7 557.8211059570312 2 557.820673 1113.62679 NaN NaN NaN NaN NaN NaN NaN 41.467 1 45.113 44.613 45.613 3.6458 0 0 0 0.40746 1 7493 7493 0.69038 0 1 54525 16534 34114 34132 62778 62778 0.0745241636557239 WQKRTSKR 8 Unmodified _WQKRTSKR_ 0 0 0 REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|136|3|sense REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|136|3|sense MSMS UPN47_class_I_Rep_1 2 545.3173217773438 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 80.429 1 83.894 83.394 84.394 3.465 0 0 0 0.40746 1 20038 20038 0.69038 0 1 + 54526 30476 34115 34133 62779 62779 0.07954478414194455 WQKRTSKR 8 Unmodified _WQKRTSKR_ 0 0 0 REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|136|3|sense REV__L1PB1_dup6981|chr9:21840246-21844752:+|4.825930936804729|0.109478566584824|5.46|151.0|136|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 545.3170776367188 2 545.317432 1088.62031 0.48126 0.00026244 -1.1876 -0.00064764 -0.70637 -0.0003852 545.3163068763304 80.76 0.24117 84.405 84.241 84.482 3.6446 52 33 2 0 0 0 0.82752 1 19130 19130 2.5775 0 1 245000 + 54527 30476 34115 34133 62780 62780 0.07954478414194455 WQLIYRRK 8 Unmodified _WQLIYRRK_ 0 0 0 REV__L1MEf_dup1297|chr2:111242334-111243889:+|1.048068550495648|0.076122966269689|3.78|151.0|100|3|anti-sense REV__L1MEf_dup1297|chr2:111242334-111243889:+|1.048068550495648|0.076122966269689|3.78|151.0|100|3|anti-sense MSMS UPN48_class_I_Rep_1 5 581.84521484375 2 581.845825 1161.6771 NaN NaN NaN NaN NaN NaN NaN 88.784 1 92.407 91.907 92.907 3.6229 0 0 0 0.40746 1 21303 21303 0.69038 0 1 + 54528 28610 34116 34134 62781 62781 0.10272525970663082 WQLKWILR 8 Unmodified _WQLKWILR_ 0 0 0 L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|57|3|sense L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|57|3|sense L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|57|3|sense MSMS UPN46_class_I_Rep_3 1 571.8452758789062 2 571.845294 1141.67603 NaN NaN NaN NaN NaN NaN NaN 21.34 1 21.34 20.84 21.84 0 0 0 0 0.40746 1 2372 2372 0.69038 0 1 54529 9673 34117 34135 62782 62782 0.11086311601775378 WQLPLPLL 8 Unmodified _WQLPLPLL_ 0 0 0 REV__ENST00000379053.4_1_20:5482206-5485036:-|nuORF REV__ENST00000379053.4_1_20:5482206-5485036:-|nuORF MSMS UPN48_class_I_Rep_3 7 490.3011169433594 2 490.302396 978.590239 NaN NaN NaN NaN NaN NaN NaN 65.768 1 69.276 68.776 69.776 3.5077 0 0 0 0.40746 1 14887 14887 0.69038 0 1 + 54530 22036 34118 34136 62783 62783 0.10008726696275971 WQLPPPAT 8 Unmodified _WQLPPPAT_ 0 0 0 nc|ENSG00000118495|Q9UM63-2|PLAGL1;ENSG00000118495|ENST00000674357|PLAGL1 nc|ENSG00000118495|Q9UM63-2|PLAGL1 nc|ENSG00000118495|Q9UM63-2|PLAGL1 MULTI-MSMS UPN47_class_I_Rep_1 2 455.24468994140625 2 455.245078 908.475603 0.19161 8.723E-05 -0.57028 -0.00025962 -0.37867 -0.00017239 455.2446428156413 100.66 0.13511 104.45 104.4 104.53 3.7942 28 19 2 0 0 0 0.82752 1 24870 24870 2.3027 1.5091 1 100630 54531 2251 34119 34137 62784 62784 0.01770417214322606 WQLPPPAT 8 Unmodified _WQLPPPAT_ 0 0 0 nc|ENSG00000118495|Q9UM63-2|PLAGL1;ENSG00000118495|ENST00000674357|PLAGL1 nc|ENSG00000118495|Q9UM63-2|PLAGL1 nc|ENSG00000118495|Q9UM63-2|PLAGL1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 455.245078 908.475603 0.16505 7.5138E-05 -0.28052 -0.00012771 -0.11548 -5.257E-05 455.2448814661868 100.61 0.056534 104.36 104.31 104.37 3.7417 -0.048524 0.00023745 NaN 2.3027 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 54432 54532 2251 34119 34137 0.01770417214322606 WQLVLSTA 8 Unmodified _WQLVLSTA_ 0 0 0 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 MSMS UPN46_class_I_Rep_3 1 459.25677490234375 2 459.258185 916.501818 NaN NaN NaN NaN NaN NaN NaN 101.32 1 101.32 100.82 101.82 0 0 0 0 0.40738 1 24719 24719 0.79363 0 1 + 54533 19412 34120 34138 62785 62785 0.04022686385781071 WQMLRVLEE 9 Unmodified _WQMLRVLEE_ 0 0 0 nc|ENSG00000123815|Q96D53-2|COQ8B;ENSG00000123815|ENST00000324464|COQ8B nc|ENSG00000123815|Q96D53-2|COQ8B nc|ENSG00000123815|Q96D53-2|COQ8B MSMS UPN46_class_I_Rep_3 1 401.8775939941406 3 401.877869 1202.61178 NaN NaN NaN NaN NaN NaN NaN 18.143 1 18.143 17.643 18.643 0 0 0 0 0.4029 1 1539 1539 0 0 1 54534 2437 34121 34139 62786 62786 0.018577436627083443 WQNDVWLF 8 Unmodified _WQNDVWLF_ 0 0 0 REV__L1PB1_dup12805|chr21:38429755-38430473:-|1.3377279755372773|0.0304197072125728|5.46|147.0|37|3|anti-sense REV__L1PB1_dup12805|chr21:38429755-38430473:-|1.3377279755372773|0.0304197072125728|5.46|147.0|37|3|anti-sense MSMS UPN48_class_I_Rep_3 7 554.6857299804688 2 554.266542 1106.51853 NaN NaN NaN NaN NaN NaN NaN 24.048 1 27.817 27.317 28.317 3.769 0 0 0 0.40738 1 2729 2729 0.79363 0 1 + 54535 30350 34122 34140 62787 62787 -0.030468127282574642 WQNVFVCCKKP 11 Unmodified _WQNVFVCCKKP_ 0 0 0 REV__ENSG00000140505|ENST00000343932|CYP1A2 REV__ENSG00000140505|ENST00000343932|CYP1A2 MULTI-MSMS UPN48_class_I_Rep_3 7 451.56121826171875 3 451.226504 1350.65768 0.069231 3.1239E-05 0.12381 5.5865E-05 0.19304 8.7104E-05 451.2264809411191 32.991 0.89131 36.68 36.408 37.299 3.6896 129 99 2 0 0 0 0.68132 1 5056 5056 0.40827 0 1 86187 + 54536 19345 34123 34141 62788 62788 -0.0036193442674630205 WQPAAQYL 8 Unmodified _WQPAAQYL_ 0 0 0 REV__THE1B-int_dup113|chr1:93242516-93244021:-|2.212139163054544|0.3171055955838593|2.8|151.0|65|2|anti-sense REV__THE1B-int_dup113|chr1:93242516-93244021:-|2.212139163054544|0.3171055955838593|2.8|151.0|65|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 488.748046875 2 488.747985 975.481417 0.17938 8.7673E-05 -0.40108 -0.00019603 -0.2217 -0.00010836 488.74788898240837 69.78 0.57728 72.985 72.697 73.274 3.2044 54 44 2 0 0 0 0.82752 1 17036 17036 4.756 0 1 87800 + 54537 32239 34124 34142 62789 62789 -0.007304842740154527 WQPCIISAI 9 Unmodified _WQPCIISAI_ 0 0 0 Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|50|3|sense Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|50|3|sense Tigger1_dup7719|chrX:135537755-135540149:-|2.680445875075561|0.2035203998607673|3.72|151.0|50|3|sense MSMS UPN46_class_I_Rep_3 1 515.7374877929688 2 515.773145 1029.53174 NaN NaN NaN NaN NaN NaN NaN 116.51 1 116.51 116.01 117.01 0 0 0 0 0.39428 1 28845 28845 2.0598 0.21551 1 54538 33182 34125 34143 62790 62790 0.018153020594809277 WQPNSALC 8 Unmodified _WQPNSALC_ 0 0 0 L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|86|1|anti-sense L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|86|1|anti-sense L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|86|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 459.7101745605469 2 459.710545 917.406537 0.21094 9.697E-05 -0.29451 -0.00013539 -0.08357 -3.8418E-05 459.71046503065736 101.38 0.19199 101.38 101.23 101.42 0 23 21 2 0 0 0 0.82752 1 24727 24727 0.79363 0 1 160760 54539 11864 34126 34144 62791 62791 -0.055469900769026026 WQPNSALC 8 Unmodified _WQPNSALC_ 0 0 0 L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|86|1|anti-sense L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|86|1|anti-sense L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|86|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 459.710545 917.406537 -0.075554 -3.4733E-05 -0.62322 -0.0002865 -0.69878 -0.00032124 459.7106738148413 98.216 0.026566 101.64 101.62 101.64 3.4216 0.12883 -0.00028315 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 14223 54540 11864 34126 34144 -0.055469900769026026 WQPRFFYK 8 Unmodified _WQPRFFYK_ 0 0 0 REV__L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|8|1|sense REV__L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 586.392578125 2 586.306001 1170.59745 NaN NaN NaN NaN NaN NaN NaN 43.486 1 43.486 42.986 43.986 0 0 0 0 0.40625 1 8686 8686 2.3027 0.24298 1 + 54541 25445 34127 34145 62792 62792 0.018974592966969794 WQPVNTGR 8 Unmodified _WQPVNTGR_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MSMS UPN47_class_I_Rep_2 3 479.2474670410156 2 479.248683 956.482814 NaN NaN NaN NaN NaN NaN NaN 14.015 1 17.402 16.902 17.902 3.3871 0 0 0 0.40659 1 467 467 1.8442 0 1 54542 4161 34128 34146 62793 62793 0.00283149814765693 WQPYFMFL 8 Unmodified _WQPYFMFL_ 0 0 0 REV__MER106B_dup11|chr1:32125368-32125721:-|1.6456423494886816|0.0037798006486091|8.77|151.0|9|2|sense REV__MER106B_dup11|chr1:32125368-32125721:-|1.6456423494886816|0.0037798006486091|8.77|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 566.2685546875 2 566.270238 1130.52592 NaN NaN NaN NaN NaN NaN NaN 23.45 1 27.154 26.654 27.654 3.7042 0 0 0 0.40738 1 2899 2899 0.79363 0 1 + 54543 31071 34129 34147 62794 62794 -0.034117964521783506 WQQLFFDF 8 Unmodified _WQQLFFDF_ 0 0 0 L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|146|2|anti-sense L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|146|2|anti-sense L1PA15_dup4761|chrX:56137796-56140776:+|5.489785849461702|0.2808252408673861|4.29|151.0|146|2|anti-sense MSMS UPN47_class_I_Rep_3 4 565.76806640625 2 565.768917 1129.52328 NaN NaN NaN NaN NaN NaN NaN 46.146 1 49.39 48.89 49.89 3.2441 0 0 0 0.40604 1 9845 9845 2.5775 0 1 54544 13940 34130 34148 62795 62795 -0.036299285854966 WQQLVKHR 8 Unmodified _WQQLVKHR_ 0 0 0 ENSG00000196584|ENST00000359321|XRCC2 ENSG00000196584|ENST00000359321|XRCC2 ENSG00000196584|ENST00000359321|XRCC2 MSMS UPN48_class_I_Rep_2 6 547.8159790039062 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 26.705 1 30.338 29.838 30.838 3.6332 0 0 0 0.40604 1 3438 3438 2.5775 0.51773 1 54545 5321 34131 34149 62796 62796 0.07143379902504421 WQQPALHY 8 Unmodified _WQQPALHY_ 0 0 0 REV__L1PA15_dup2578|chr5:75435102-75436018:-|1.6606284868429526|0.0191895358375834|6.44|151.0|25|3|sense REV__L1PA15_dup2578|chr5:75435102-75436018:-|1.6606284868429526|0.0191895358375834|6.44|151.0|25|3|sense MSMS UPN48_class_I_Rep_1 5 521.6571655273438 2 521.758884 1041.50321 NaN NaN NaN NaN NaN NaN NaN 88.153 1 91.776 91.276 92.276 3.6229 0 0 0 0.40738 1 21142 21142 0.79363 0 1 + 54546 29218 34132 34150 62797 62797 -0.015876795254371245 WQQRFQWKTY 10 Unmodified _WQQRFQWKTY_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|98|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|98|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|98|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 490.9154357910156 3 490.914083 1469.72042 0.19093 9.3731E-05 1.773 0.00087038 1.9639 0.00096411 490.9150250000008 37.981 0.29617 41.486 41.311 41.607 3.5052 45 30 2 0 0 0 0.84575 1 6480 6480 0.62683 0.53198 1 98371 54547 9428 34133 34151 62798 62798 0.0043467095729283756 WQQRFQWKTY 10 Unmodified _WQQRFQWKTY_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|98|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|98|2|sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|98|2|sense MSMS UPN48_class_I_Rep_3 7 490.9150085449219 3 490.914083 1469.72042 NaN NaN NaN NaN NaN NaN NaN 37.754 1 41.414 40.914 41.914 3.6595 0 0 0 0.53105 1 6401 6401 0.62683 0.12087 1 54548 9428 34133 34151 62799 62799 0.0043467095729283756 WQRGRKFL 8 Unmodified _WQRGRKFL_ 0 0 0 ENSG00000169905|ENST00000609928|TOR1AIP2 ENSG00000169905|ENST00000609928|TOR1AIP2 ENSG00000169905|ENST00000609928|TOR1AIP2 MSMS UPN47_class_I_Rep_2 3 545.8179931640625 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 23.721 1 27.187 26.687 27.687 3.4655 0 0 0 0.40746 1 3030 3030 0.69038 0 1 54549 4445 34134 34152 62800 62800 0.07835683765142676 WQRHNKIKKI 10 Unmodified _WQRHNKIKKI_ 0 0 0 L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|14|1|sense L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|14|1|sense L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|14|1|sense MSMS UPN46_class_I_Rep_3 1 450.839599609375 3 450.942084 1349.80442 NaN NaN NaN NaN NaN NaN NaN 52.332 1 52.332 51.832 52.832 0 0 0 0 0.53105 1 11183 11183 0.15932 0 1 54550 14897 34135 34153 62801 62801 0.14351246844876187 WQRKEQFN 8 Unmodified _WQRKEQFN_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS UPN47_class_I_Rep_1 2 568.2846069335938 2 568.285797 1134.55704 0.3152 0.00017913 -1.4517 -0.00082497 -1.1365 -0.00064584 568.2852268870753 54.232 0.21842 57.734 57.55 57.769 3.5014 14 9 3 0 0 0 0.82752 1 12206 12206 3.9444 0 1 61235 + 54551 20461 34136 34154 62802 62802 -0.004855070937082928 WQRKEQFN 8 Unmodified _WQRKEQFN_ 0 0 0 REV__nc|ENSG00000172869|Q9Y485|DMXL1 REV__nc|ENSG00000172869|Q9Y485|DMXL1 MSMS UPN47_class_I_Rep_3 4 568.28515625 2 568.285797 1134.55704 NaN NaN NaN NaN NaN NaN NaN 54.818 1 58.003 57.503 58.503 3.1856 0 0 0 0.40501 1 12478 12478 3.9444 0.66309 1 + 54552 20461 34136 34154 62803 62803 -0.004855070937082928 WQRKKRLF 8 Unmodified _WQRKKRLF_ 0 0 0 MSTA-int_dup1230|chr6:149360622-149362186:-|1.6842845194873242|0.0849039636008396|4.31|151.0|40|3|sense MSTA-int_dup1230|chr6:149360622-149362186:-|1.6842845194873242|0.0849039636008396|4.31|151.0|40|3|sense MSTA-int_dup1230|chr6:149360622-149362186:-|1.6842845194873242|0.0849039636008396|4.31|151.0|40|3|sense MSMS UPN48_class_I_Rep_2 6 581.3532104492188 2 581.353817 1160.69308 NaN NaN NaN NaN NaN NaN NaN 97.18 1 100.96 100.46 101.46 3.779 0 0 0 0.40746 1 23095 23095 0.69038 0 1 54553 16540 34137 34155 62804 62804 0.11916232207590838 WQRLAHLW 8 Unmodified _WQRLAHLW_ 0 0 0 chr17:3905367-3915386|137|11.68|0.69|4.09|-|1|P2RX1,None|1 chr17:3905367-3915386|137|11.68|0.69|4.09|-|1|P2RX1,None|1 chr17:3905367-3915386|137|11.68|0.69|4.09|-|1|P2RX1,None|1 MSMS UPN46_class_I_Rep_3 1 555.3037109375 2 555.303793 1108.59303 NaN NaN NaN NaN NaN NaN NaN 30.4 1 30.4 29.9 30.9 0 0 0 0 0.40746 1 4945 4945 0.69038 0 1 54554 593 34138 34156 62805 62805 0.04307994873784082 WQRLPVVPVT 10 Unmodified _WQRLPVVPVT_ 0 0 0 AluJo_dup1810|chr1:35840601-35840914:-|1.8066247203991623|0.3247623420596387|2.48|151.0|3|1|sense AluJo_dup1810|chr1:35840601-35840914:-|1.8066247203991623|0.3247623420596387|2.48|151.0|3|1|sense AluJo_dup1810|chr1:35840601-35840914:-|1.8066247203991623|0.3247623420596387|2.48|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 597.8563842773438 2 597.853316 1193.69208 NaN NaN NaN NaN NaN NaN NaN 89.898 1 89.898 89.398 90.398 0 0 0 0 0.53105 1 21651 21651 1.6526 0.45928 1 54555 92 34139 34157 62806 62806 0.10297973048022868 WQRPPRGR 8 Unmodified _WQRPPRGR_ 0 0 0 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 MSMS UPN47_class_I_Rep_3 4 527.2831420898438 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 25.67 1 29.018 28.518 29.518 3.3478 0 0 0 0.40746 1 3644 3644 0.69038 0 1 54556 2858 34140 34158 62807 62807 0.05505342445508177 WQRPPRGR 8 Unmodified _WQRPPRGR_ 0 0 0 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 MSMS UPN47_class_I_Rep_3 4 527.2818603515625 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 25.858 1 29.206 28.706 29.706 3.3478 0 0 0 0.40746 1 3698 3698 0.69038 0 1 54557 2858 34140 34158 62808 62808 0.05505342445508177 WQRQKKRI 8 Unmodified _WQRQKKRI_ 0 0 0 L1PA6_dup1254|chr3:142135407-142141502:-|5.131494547787043|0.0894150822744212|5.84|151.0|38|1|sense L1PA6_dup1254|chr3:142135407-142141502:-|5.131494547787043|0.0894150822744212|5.84|151.0|38|1|sense L1PA6_dup1254|chr3:142135407-142141502:-|5.131494547787043|0.0894150822744212|5.84|151.0|38|1|sense MSMS UPN48_class_I_Rep_1 5 571.85009765625 2 571.848899 1141.68324 NaN NaN NaN NaN NaN NaN NaN 110.92 1 114.55 114.05 115.05 3.6326 0 0 0 0.40746 1 26910 26910 0.69038 0 1 54558 14557 34141 34159 62809 62809 0.11807044202214456 WQRRRKTNRRQ 11 Unmodified _WQRRRKTNRRQ_ 0 0 0 REV__MLT1D_dup18133|chr17:58314274-58314722:+|3.5952904950626827|0.3993590405802018|3.17|151.0|14|3|sense REV__MLT1D_dup18133|chr17:58314274-58314722:+|3.5952904950626827|0.3993590405802018|3.17|151.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 528.9752197265625 3 528.973329 1583.89816 NaN NaN NaN NaN NaN NaN NaN 55.36 1 55.36 54.86 55.86 0 0 0 0 0.38417 1 12032 12032 0.45452 0.35968 1 + 54559 31674 34142 34160 62810 62810 0.12956358999872464 WQRYYTQI 8 Unmodified _WQRYYTQI_ 0 0 0 REV__nc|ENSG00000164675|Q8NA54-2|IQUB REV__nc|ENSG00000164675|Q8NA54-2|IQUB MSMS UPN48_class_I_Rep_1 5 579.7766723632812 2 579.290548 1156.56654 NaN NaN NaN NaN NaN NaN NaN 71.27 1 74.736 74.236 75.236 3.466 0 0 0 0.40643 1 16651 16651 2.0598 0.21551 1 + 54560 20075 34143 34161 62811 62811 -0.005477388081999379 WQTKIERWLLL 11 Unmodified _WQTKIERWLLL_ 0 0 0 REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF MSMS UPN48_class_I_Rep_2 6 495.9591369628906 3 495.9574 1484.85037 NaN NaN NaN NaN NaN NaN NaN 95.658 1 99.439 98.939 99.939 3.7804 0 0 0 0.38417 1 22734 22734 0.50596 0.051438 1 + 54561 22685 34144 34162 62812 62812 0.12733847236472684 WQTKIERWLLL 11 Unmodified _WQTKIERWLLL_ 0 0 0 REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF MSMS UPN48_class_I_Rep_2 6 495.9590759277344 3 495.9574 1484.85037 NaN NaN NaN NaN NaN NaN NaN 96.153 1 99.933 99.433 100.43 3.7804 0 0 0 0.38417 1 22839 22839 0.50596 0.051438 1 + 54562 22685 34144 34162 62813 62813 0.12733847236472684 WQVACKMSIY 10 Unmodified _WQVACKMSIY_ 0 0 0 REV__L1MB7_dup19549|chr17:2989697-2990297:-|1.8520251795767424|0.0484158088516358|5.26|151.0|30|2|anti-sense REV__L1MB7_dup19549|chr17:2989697-2990297:-|1.8520251795767424|0.0484158088516358|5.26|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_3 4 614.7962646484375 2 614.796294 1227.57804 NaN NaN NaN NaN NaN NaN NaN 47.895 1 51.136 50.636 51.636 3.2405 0 0 0 0.53105 1 10366 10366 4.897 0 1 + 54563 26198 34145 34163 62814 62814 -0.026650011007177454 WQVEERCH 8 Unmodified _WQVEERCH_ 0 0 0 REV__ENSG00000186648|ENST00000342740|CARMIL3 REV__ENSG00000186648|ENST00000342740|CARMIL3 MSMS UPN47_class_I_Rep_1 2 543.7426147460938 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 24.991 1 28.741 28.241 29.241 3.7495 0 0 0 0.40625 1 3359 3359 2.3027 0 1 + 54564 20898 34146 34164 62815 62815 -0.06805415270878257 WQVGAQSLAF 10 Unmodified _WQVGAQSLAF_ 0 0 0 REV__AluSx1_dup89782|chr16:11909643-11909947:+|1.208348869925918|0.1099794198993438|3.46|151.0|14|2|anti-sense REV__AluSx1_dup89782|chr16:11909643-11909947:+|1.208348869925918|0.1099794198993438|3.46|151.0|14|2|anti-sense MSMS UPN48_class_I_Rep_1 5 553.78515625 2 553.785099 1105.55564 NaN NaN NaN NaN NaN NaN NaN 55.658 1 59.166 58.666 59.666 3.5082 0 0 0 0.53105 1 11901 11901 5.2969 0 1 + 54565 17187 34147 34165 62816 62816 0.007088588175292898 WQVYYPMM 8 Unmodified _WQVYYPMM_ 0 0 0 ENST00000527416.2_1_14:95555309-95557645:-|nuORF;ENST00000527554.2_1_14:95557369-95557645:-|nuORF;nc|ENSG00000100697|Q9UPY3-3|DICER1;ENSG00000100697|ENST00000343455|DICER1 ENST00000527416.2_1_14:95555309-95557645:-|nuORF ENST00000527416.2_1_14:95555309-95557645:-|nuORF MSMS UPN48_class_I_Rep_1 5 559.2466430664062 2 559.245906 1116.47726 NaN NaN NaN NaN NaN NaN NaN 18.202 1 21.734 21.234 22.234 3.5313 0 0 0 0.40738 1 1186 1186 0.79363 0.10326 1 54566 7271 34148 34166 62817 62817 -0.07632033083586975 WQWALSLTC 9 Unmodified _WQWALSLTC_ 0 0 0 REV__L1MC3_dup8090|chr10:42602938-42604162:+|1.0563984735042058|0.0617022061029706|4.1|151.0|59|2|anti-sense REV__L1MC3_dup8090|chr10:42602938-42604162:+|1.0563984735042058|0.0617022061029706|4.1|151.0|59|2|anti-sense MSMS UPN47_class_I_Rep_1 2 554.269775390625 2 554.268227 1106.5219 NaN NaN NaN NaN NaN NaN NaN 49.871 1 53.53 53.03 54.03 3.6592 0 0 0 0.38639 1 10886 10886 3.9444 0 1 + 54567 26781 34149 34167 62818 62818 -0.027098859458874358 WQWLKWRRLRR 11 Unmodified _WQWLKWRRLRR_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 421.75775146484375 4 421.750931 1682.97462 -0.15764 -6.6484E-05 1.867 0.0007874 1.7093 0.00072092 422.00311145022357 30.055 0.1528 30.055 29.985 30.138 0 22 12 3 0 0 0 0.68478 1 4863 4863 0.094841 0 1 71600 54568 7398 34150 34168 62819 62819 0.16044782567132643 WQWLTFPAR 9 Unmodified _WQWLTFPAR_ 0 0 0 L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|5|1|sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|5|1|sense L1MA6_dup3559|chr10:26549953-26551511:-|6.231233533350464|0.0663768953691005|6.55|151.0|5|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 602.31494140625 2 602.816733 1203.61891 0.45506 0.00027431 -3.1062 -0.0018725 -2.6511 -0.0015982 602.8152971074154 74.008 0.1235 77.489 77.386 77.51 3.4812 13 10 2 0 0 0 0.12462 1 17470 17470 1.8442 0.36234 1 85601 54569 9979 34151 34169 62820 62820 0.025248443253985897 WQWLWQRA 8 Unmodified _WQWLWQRA_ 0 0 0 L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|332|3|anti-sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|332|3|anti-sense L1PREC2_dup4614|chrX:81332986-81338702:-|1.641615579150728|0.0657071949863741|4.64|151.0|332|3|anti-sense MSMS UPN48_class_I_Rep_1 5 587.3016967773438 2 587.30125 1172.58795 NaN NaN NaN NaN NaN NaN NaN 26.933 1 30.496 29.996 30.996 3.5629 0 0 0 0.40746 1 3388 3388 0.69038 0 1 54570 15465 34152 34170 62821 62821 0.00855691011156523 WQYLLISY 8 Unmodified _WQYLLISY_ 0 0 0 REV__L1ME3A_dup8374|chr9:112293011-112293312:+|1.050370977899757|0.0116902524247258|6.49|151.0|18|2|anti-sense REV__L1ME3A_dup8374|chr9:112293011-112293312:+|1.050370977899757|0.0116902524247258|6.49|151.0|18|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 543.2890014648438 2 543.286943 1084.55933 0.312 0.00016951 -0.52384 -0.0002846 -0.21184 -0.00011509 543.286506859086 51.647 0.68632 51.647 51.317 52.003 0 118 78 2 0 0 0 0.82752 1 10917 10917 15.847 0 1 340870 + 54571 28037 34153 34171 62822 62822 0.020435285913890766 WRAEMFMNI 9 Unmodified _WRAEMFMNI_ 0 0 0 MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|84|3|sense;MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|63|2|sense MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|84|3|sense MER4-int_dup956|chr6:25133412-25136073:+|1.940053983034021|0.0761992810981986|4.67|151.0|84|3|sense MSMS UPN48_class_I_Rep_3 7 599.2818603515625 2 599.280812 1196.54707 NaN NaN NaN NaN NaN NaN NaN 35.738 1 39.405 38.905 39.905 3.6667 0 0 0 0.38916 1 5835 5835 3.2813 0.28607 1 54572 15950 34154 34172 62823 62823 -0.04334154414959812 WRAGVEKI 8 Unmodified _WRAGVEKI_ 0 0 0 L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|48|1|anti-sense L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|48|1|anti-sense L1M6_dup4625|chr14:60265995-60266947:-|1.4555304870078862|0.1052507831074236|3.79|150.0|48|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 479.776611328125 2 479.777077 957.5396 0.021028 1.0089E-05 0.079652 3.8215E-05 0.10068 4.8304E-05 479.77703340177266 46.926 0.66231 50.278 50.023 50.685 3.3515 62 47 2 0 0 0 0.82752 2 9974 9974;10099 2.3027 0.4585 1 146900 54573 9218 34155 34173 62824;62825 62824 0.05913197371273782 WRAIKLQL 8 Unmodified _WRAIKLQL_ 0 0 0 REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|243|3|anti-sense REV__MER61-int_dup539|chr7:64362430-64366083:-|1.0174605939286612|0.1546896850734564|2.72|151.0|243|3|anti-sense MSMS UPN47_class_I_Rep_1 2 514.3233642578125 2 514.324194 1026.63383 NaN NaN NaN NaN NaN NaN NaN 95.132 1 98.882 98.382 99.382 3.7508 0 0 0 0.40625 1 23619 23619 2.3027 0 1 + 54574 31504 34156 34174 62826 62826 0.1215833619339719 WRAKGIDI 8 Unmodified _WRAKGIDI_ 0 0 0 REV__ENSG00000064313.12,TAF2,chr8,-,I5.1,119802026,119803877|32|6.37|5|intron REV__ENSG00000064313.12,TAF2,chr8,-,I5.1,119802026,119803877|32|6.37|5|intron MULTI-MSMS UPN47_class_I_Rep_3 4 479.77716064453125 2 479.777077 957.5396 -0.034516 -1.656E-05 0.12269 5.8863E-05 0.088173 4.2303E-05 479.77697890513207 47.048 0.66373 50.292 49.992 50.656 3.2439 66 41 3 0 0 0 0.82752 1 10156 10156 2.3027 1.5091 1 104390 + 54575 17740 34157 34175 62827 62827 0.05913197371273782 WRALPARRV 9 Unmodified _WRALPARRV_ 0 0 0 ENST00000204005.13_1_19:41112319-41113358:+|nuORF ENST00000204005.13_1_19:41112319-41113358:+|nuORF ENST00000204005.13_1_19:41112319-41113358:+|nuORF MSMS UPN48_class_I_Rep_3 7 562.843505859375 2 562.843616 1123.67268 NaN NaN NaN NaN NaN NaN NaN 115.38 1 119.02 118.52 119.52 3.6433 0 0 0 0.4029 1 27450 27450 0 0 1 54576 5857 34158 34176 62828 62828 0.11579061547763558 WRALTVRA 8 Unmodified _WRALTVRA_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS UPN48_class_I_Rep_3 7 486.7909240722656 2 486.790518 971.566484 0.13883 6.7579E-05 -0.33162 -0.00016143 -0.1928 -9.3852E-05 486.79034258529623 34.874 0.45913 38.546 38.402 38.861 3.6721 88 51 2 0 0 0 0.82752 1 5660 5660 2.3027 0 1 136070 54577 4233 34159 34177 62829 62829 0.07956305982440881 WRASPLVE 8 Unmodified _WRASPLVE_ 0 0 0 REV__ENSG00000137054|ENST00000377798|POLR1E REV__ENSG00000137054|ENST00000377798|POLR1E MSMS UPN47_class_I_Rep_2 3 479.2472839355469 2 479.261259 956.507966 NaN NaN NaN NaN NaN NaN NaN 39.206 1 42.584 42.084 43.084 3.3785 0 0 0 0.40625 1 7674 7674 2.3027 0 1 + 54578 19211 34160 34178 62830 62830 0.027972046173204035 WRASPLVE 8 Unmodified _WRASPLVE_ 0 0 0 REV__ENSG00000137054|ENST00000377798|POLR1E REV__ENSG00000137054|ENST00000377798|POLR1E MSMS UPN47_class_I_Rep_3 4 479.2474060058594 2 479.261259 956.507966 NaN NaN NaN NaN NaN NaN NaN 39.337 1 42.575 42.075 43.075 3.238 0 0 0 0.40404 1 7760 7760 5.2307 0 1 + 54579 19211 34160 34178 62831 62831 0.027972046173204035 WRAWHRCS 8 Unmodified _WRAWHRCS_ 0 0 0 REV__nc|nan|Q9NRJ1|C8orf17 REV__nc|nan|Q9NRJ1|C8orf17 MSMS UPN46_class_I_Rep_3 1 551.2620849609375 2 551.261602 1100.50865 NaN NaN NaN NaN NaN NaN NaN 29.111 1 29.111 28.611 29.611 0 0 0 0 0.40746 1 4567 4567 0.69038 0 1 + 54580 32142 34161 34179 62832 62832 -0.03758279214639515 WRCDGERDCP 10 Unmodified _WRCDGERDCP_ 0 0 0 LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant;nc|ENSG00000123384|Q07954-2|LRP1;LRP1|p.I789Hfs*3|1|0.14|ENSG00000123384|chr12:57162472-57162473|-/C|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1 LRP1|p.R472Pfs*8|1|0.18|ENSG00000123384|chr12:57156276-57156277|-/C|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS UPN47_class_I_Rep_2 3 618.748779296875 2 618.747864 1235.48118 NaN NaN NaN NaN NaN NaN NaN 42.978 1 46.339 45.839 46.839 3.3611 0 0 0 0.53105 1 8819 8819 3.5965 1.7523 1 54581 15505;2422 34162 34180 62833 62833 -0.12714595327815914 WRCGFHAGP 9 Unmodified _WRCGFHAGP_ 0 0 0 nc|ENSG00000150347|Q14865-3|ARID5B;ENSG00000150347|ENST00000279873|ARID5B nc|ENSG00000150347|Q14865-3|ARID5B nc|ENSG00000150347|Q14865-3|ARID5B MSMS UPN48_class_I_Rep_3 7 515.2657470703125 2 515.737428 1029.4603 NaN NaN NaN NaN NaN NaN NaN 21.422 1 25.137 24.637 25.637 3.7144 0 0 0 0.4029 1 2007 2007 0 0 1 54582 3560 34163 34181 62834 62834 -0.05324772854487492 WRCKKRHD 8 Unmodified _WRCKKRHD_ 0 0 0 REV__ENST00000552197.5_1_12:46594910-46598142:-|nuORF REV__ENST00000552197.5_1_12:46594910-46598142:-|nuORF MSMS UPN48_class_I_Rep_3 7 564.7973022460938 2 564.795809 1127.57707 NaN NaN NaN NaN NaN NaN NaN 23.072 1 26.823 26.323 27.323 3.7507 0 0 0 0.40746 1 2461 2461 0.69038 0 1 + 54583 22966 34164 34182 62835 62835 0.01837965365234595 WRCLPVWR 8 Unmodified _WRCLPVWR_ 0 0 0 L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|241|1|anti-sense L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|241|1|anti-sense L1PA8_dup1532|chr3:121810992-121817438:+|4.559286287261567|0.4526967927628469|3.33|151.0|241|1|anti-sense MSMS UPN46_class_I_Rep_3 1 558.30078125 2 558.300196 1114.58584 NaN NaN NaN NaN NaN NaN NaN 80.07 1 80.07 79.57 80.57 0 0 0 0 0.40746 1 18842 18842 0.69038 0 1 54584 14925 34165 34183 62836 62836 0.03312939001716586 WRDEWVQR 8 Unmodified _WRDEWVQR_ 0 0 0 L1ME1_dup27250|chr17:10082384-10083164:+|1.241077862161161|0.0044947418184137|8.11|150.0|6|1|sense L1ME1_dup27250|chr17:10082384-10083164:+|1.241077862161161|0.0044947418184137|8.11|150.0|6|1|sense L1ME1_dup27250|chr17:10082384-10083164:+|1.241077862161161|0.0044947418184137|8.11|150.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 587.7920532226562 2 587.791247 1173.56794 NaN NaN NaN NaN NaN NaN NaN 24.98 1 24.98 24.48 25.48 0 0 0 0 0.40753 1 3358 3358 0.6015 0 1 54585 12353 34166 34184 62837 62837 -0.011901047194442071 WRDFFTLTS 9 Unmodified _WRDFFTLTS_ 0 0 0 L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|131|3|anti-sense L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|131|3|anti-sense L1MC5_dup5954|chr6:163487184-163489162:-|1.574530820373857|0.0394950662607608|5.32|151.0|131|3|anti-sense MSMS UPN47_class_I_Rep_1 2 586.79296875 2 586.790381 1171.56621 NaN NaN NaN NaN NaN NaN NaN 65.36 1 68.716 68.216 69.216 3.3557 0 0 0 0.39518 1 15585 15585 1.8442 0.36234 1 54586 11691 34167 34185 62838 62838 -0.01271158528061278 WRDLSSCE 8 Unmodified _WRDLSSCE_ 0 0 0 ENST00000441246.6_1_4:57845143-57851511:+|nuORF ENST00000441246.6_1_4:57845143-57851511:+|nuORF ENST00000441246.6_1_4:57845143-57851511:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 498.2620849609375 2 498.216192 994.41783 0.13419 6.6855E-05 0.68317 0.00034037 0.81736 0.00040722 498.21649964844227 68.281 0.13776 71.645 71.612 71.75 3.3646 14 9 2 0 0 0 0.72333 1 16501 16501 2.3027 0 1 47411 54587 6777 34168 34186 62839 62839 -0.07960212773400599 WREAGFVW 8 Unmodified _WREAGFVW_ 0 0 0 REV__ENSG00000241945|ENST00000291576|PWP2 REV__ENSG00000241945|ENST00000291576|PWP2 MSMS UPN47_class_I_Rep_1 2 525.761474609375 2 525.761426 1049.5083 NaN NaN NaN NaN NaN NaN NaN 113.68 1 117.25 116.75 117.75 3.572 0 0 0 0.40738 1 28060 28060 0.79363 0 1 + 54588 21329 34169 34187 62840 62840 -0.014473756628376577 WREHMKKW 8 Unmodified _WREHMKKW_ 0 0 0 L1M1_dup4109|chr7:140816834-140817718:+|1.4915878681700745|0.0280374306655713|5.73|151.0|17|2|sense L1M1_dup4109|chr7:140816834-140817718:+|1.4915878681700745|0.0280374306655713|5.73|151.0|17|2|sense L1M1_dup4109|chr7:140816834-140817718:+|1.4915878681700745|0.0280374306655713|5.73|151.0|17|2|sense MSMS UPN48_class_I_Rep_3 7 600.8060302734375 2 600.808385 1199.60222 NaN NaN NaN NaN NaN NaN NaN 54.213 1 57.782 57.282 58.282 3.5694 0 0 0 0.40746 1 11375 11375 0.69038 0.088878 1 54589 8557 34170 34188 62841 62841 0.010400201678066878 WRERRRQKRRL 11 Unmodified _WRERRRQKRRL_ 0 0 0 REV__nc|ENSG00000164197|Q86T96-2|RNF180 REV__nc|ENSG00000164197|Q86T96-2|RNF180 MSMS UPN46_class_I_Rep_3 1 547.332275390625 3 547.332857 1638.97674 NaN NaN NaN NaN NaN NaN NaN 93.736 1 93.736 93.236 94.236 0 0 0 0 0.38417 1 22725 22725 0 0 1 + 54590 20042 34171 34189 62842 62842 0.18281211304952194 WRERRRQKRRL 11 Unmodified _WRERRRQKRRL_ 0 0 0 REV__nc|ENSG00000164197|Q86T96-2|RNF180 REV__nc|ENSG00000164197|Q86T96-2|RNF180 MSMS UPN47_class_I_Rep_2 3 547.753662109375 3 547.332857 1638.97674 NaN NaN NaN NaN NaN NaN NaN 114.1 1 117.61 117.11 118.11 3.5109 0 0 0 0.38417 1 27773 27773 0 0 1 + 54591 20042 34171 34189 62843 62843 0.18281211304952194 WRERRRQKRRL 11 Unmodified _WRERRRQKRRL_ 0 0 0 REV__nc|ENSG00000164197|Q86T96-2|RNF180 REV__nc|ENSG00000164197|Q86T96-2|RNF180 MSMS UPN47_class_I_Rep_3 4 547.3320922851562 3 547.332857 1638.97674 NaN NaN NaN NaN NaN NaN NaN 116.05 1 119.51 119.01 120.01 3.462 0 0 0 0.38417 1 28549 28549 0 0 1 + 54592 20042 34171 34189 62844 62844 0.18281211304952194 WRERRRQKRRL 11 Unmodified _WRERRRQKRRL_ 0 0 0 REV__nc|ENSG00000164197|Q86T96-2|RNF180 REV__nc|ENSG00000164197|Q86T96-2|RNF180 MSMS UPN47_class_I_Rep_3 4 547.6921997070312 3 547.332857 1638.97674 NaN NaN NaN NaN NaN NaN NaN 119.77 1 123.19 122.69 123.69 3.4157 0 0 0 0.38417 1 29590 29590 0 0 1 + 54593 20042 34171 34189 62845 62845 0.18281211304952194 WREWWKMWQEK 11 Unmodified _WREWWKMWQEK_ 0 0 0 ENSG00000107643.16,MAPK8,chr10,+,I4.1,48325966,48364611|25|10.84|2|intron ENSG00000107643.16,MAPK8,chr10,+,I4.1,48325966,48364611|25|10.84|2|intron ENSG00000107643.16,MAPK8,chr10,+,I4.1,48325966,48364611|25|10.84|2|intron MSMS UPN46_class_I_Rep_3 1 564.9041137695312 3 564.941644 1691.8031 NaN NaN NaN NaN NaN NaN NaN 41.283 1 41.283 40.783 41.783 0 0 0 0 0.38417 1 8079 8079 0 0 1 54594 1825 34172 34190 62846 62846 -0.01512755306202962 WRFGLKKG 8 Unmodified _WRFGLKKG_ 0 0 0 REV__HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|140|1|anti-sense REV__HERVH-int_dup5474|chr19:9742203-9747263:+|2.29213962177494|0.4098825590982018|2.48|151.0|140|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.29534912109375 2 496.295436 990.57632 -0.093129 -4.622E-05 0.1792 8.8937E-05 0.086073 4.2718E-05 496.2954046085677 23.706 0.061127 23.706 23.689 23.75 0 12 5 4 0 0 0 0.82752 1 3022 3022 0 0 1 132310 + 54595 23693 34173 34191 62847 62847 0.08065493987862737 WRFILRILLYL 11 Unmodified _WRFILRILLYL_ 0 0 0 L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|54|1|anti-sense L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|54|1|anti-sense L1M4_dup6410|chr6:28146456-28147607:+|1.0827719986038231|0.4380642459826929|1.31|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 502.6499938964844 3 502.650018 1504.92823 0.29793 0.00014975 0.13591 6.8316E-05 0.43384 0.00021807 502.64988453019026 105.56 0.77919 109.25 108.99 109.77 3.6901 211 109 3 0 0 0 0.68081 1 25005 25005 0.45452 0 1 1722500 54596 8901 34174 34192 62848 62848 0.1959590489252605 WRFLIILRLM 10 Unmodified _WRFLIILRLM_ 0 0 0 REV__L1MC5a_dup15238|chr18:21101076-21102077:+|1.0803146416393774|0.0077927518566274|7.12|151.0|62|2|anti-sense REV__L1MC5a_dup15238|chr18:21101076-21102077:+|1.0803146416393774|0.0077927518566274|7.12|151.0|62|2|anti-sense MSMS UPN47_class_I_Rep_2 3 454.2798767089844 3 454.281049 1359.82132 NaN NaN NaN NaN NaN NaN NaN 41.71 1 45.075 44.575 45.575 3.3655 0 0 0 0.53105 1 8432 8432 0.77653 0.61721 1 + 54597 27139 34175 34193 62849 62849 0.15580031406466333 WRFLKKKKLKR 11 Unmodified _WRFLKKKKLKR_ 0 0 0 L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 510.94036865234375 3 511.008429 1530.00346 NaN NaN NaN NaN NaN NaN NaN 61.488 1 61.488 60.988 61.988 0 0 0 0 0.38417 1 13687 13687 0 0 1 54598 10003 34176 34194 62850 62850 0.25965507143564537 WRFLKKKKLKR 11 Unmodified _WRFLKKKKLKR_ 0 0 0 L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 511.2143249511719 3 511.008429 1530.00346 NaN NaN NaN NaN NaN NaN NaN 84.367 1 84.367 83.867 84.867 0 0 0 0 0.38417 1 20069 20069 0 0 1 54599 10003 34176 34194 62851 62851 0.25965507143564537 WRFLKKKKLKR 11 Unmodified _WRFLKKKKLKR_ 0 0 0 L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense L1MA7_dup1301|chr3:50015813-50016675:-|7.620338984699677|0.0348317747141412|7.77|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 510.7812805175781 3 511.008429 1530.00346 NaN NaN NaN NaN NaN NaN NaN 62.493 1 66.003 65.503 66.503 3.5104 0 0 0 0.38417 1 13894 13894 0 0 1 54600 10003 34176 34194 62852 62852 0.25965507143564537 WRFQEWHI 8 Unmodified _WRFQEWHI_ 0 0 0 REV__ENST00000336838.10_1_2:55646279-55646603:-|nuORF REV__ENST00000336838.10_1_2:55646279-55646603:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 602.30078125 2 601.298707 1200.58286 0.42226 0.00025391 -0.42637 -0.00025638 -0.0041102 -2.4714E-06 601.2986166676397 89.314 0.075256 92.94 92.875 92.951 3.6255 18 8 3 0 0 0 0.82752 1 21442 21442 0.69038 0.088878 1 230130 + 54601 21798 34177 34195 62853 62853 -0.009406128514456213 WRFQYPTI 8 Unmodified _WRFQYPTI_ 0 0 0 L1ME1_dup5137|chr2:230768792-230769696:+|2.0537343670211503|0.0117899487246037|7.44|151.0|11|1|sense L1ME1_dup5137|chr2:230768792-230769696:+|2.0537343670211503|0.0117899487246037|7.44|151.0|11|1|sense L1ME1_dup5137|chr2:230768792-230769696:+|2.0537343670211503|0.0117899487246037|7.44|151.0|11|1|sense MSMS UPN46_class_I_Rep_3 1 555.7894897460938 2 555.790184 1109.56581 NaN NaN NaN NaN NaN NaN NaN 91.832 1 91.832 91.332 92.332 0 0 0 0 0.40625 1 22198 22198 2.3027 0 1 54602 12414 34178 34196 62854 62854 0.015414665427442742 WRFRGGLGR 9 Unmodified _WRFRGGLGR_ 0 0 0 REV__ENST00000496729.2_1_22:19902718-19929326:-|nuORF REV__ENST00000496729.2_1_22:19902718-19929326:-|nuORF MSMS UPN48_class_I_Rep_1 5 552.8357543945312 2 552.812316 1103.61008 NaN NaN NaN NaN NaN NaN NaN 17.772 1 21.298 20.798 21.798 3.5261 0 0 0 0.4029 1 1086 1086 0 0 1 + 54603 20821 34179 34197 62855 62855 0.062419154796316434 WRFYRELFIK 10 Unmodified _WRFYRELFIK_ 0 0 0 REV__L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|40|1|anti-sense REV__L1MEg_dup6606|chr7:74682593-74683464:+|2.4012597125586703|0.025849017552885|6.54|151.0|40|1|anti-sense MSMS UPN46_class_I_Rep_3 1 486.6062927246094 3 486.60659 1456.79794 NaN NaN NaN NaN NaN NaN NaN 38.062 1 38.062 37.562 38.562 0 0 0 0 0.53105 1 7216 7216 0.15932 0 1 + 54604 28774 34180 34198 62856 62856 0.08781308893503592 WRGERVKK 8 Unmodified _WRGERVKK_ 0 0 0 L1PA16_dup7968|chrX:15696397-15697236:-|3.0434336974764022|0.2310724414565779|3.72|151.0|8|1|sense L1PA16_dup7968|chrX:15696397-15697236:-|3.0434336974764022|0.2310724414565779|3.72|151.0|8|1|sense L1PA16_dup7968|chrX:15696397-15697236:-|3.0434336974764022|0.2310724414565779|3.72|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 529.8148193359375 2 529.814525 1057.6145 -0.34439 -0.00018247 -0.51891 -0.00027493 -0.86331 -0.00045739 529.8143365817253 23.781 0.6213 27.132 26.852 27.473 3.3509 67 48 2 0 0 0 0.82752 1 3120 3120 2.3027 0 1 69686 54605 14121 34181 34199 62857 62857 0.08799379902507098 WRGHQNSHS 9 Unmodified _WRGHQNSHS_ 0 0 0 ENST00000482490.5_1_3:64619519-64627610:-|nuORF ENST00000482490.5_1_3:64619519-64627610:-|nuORF ENST00000482490.5_1_3:64619519-64627610:-|nuORF MSMS UPN48_class_I_Rep_3 7 554.755126953125 2 554.755195 1107.49584 NaN NaN NaN NaN NaN NaN NaN 20.567 1 24.234 23.734 24.734 3.6667 0 0 0 0.39518 1 1775 1775 1.8442 0 1 54606 7005 34182 34200 62858 62858 -0.05361019073166062 WRGKAHRLL 9 Unmodified _WRGKAHRLL_ 0 0 0 nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13 nc|ENSG00000212789|Q8NFI4|ST13P5 nc|ENSG00000212789|Q8NFI4|ST13P5 MULTI-MSMS UPN48_class_I_Rep_2 6 568.845703125 2 568.843616 1135.67268 0.47972 0.00027289 -0.90457 -0.00051456 -0.42484 -0.00024167 568.8428768489839 74.619 0.10252 78.209 78.14 78.243 3.59 18 9 3 0 0 0 0.41259 1 17565 17565 7.2892 0 1 99778 54607 1501 34183 34201 62859 62859 0.11027061547770245 WRGKFKRN 8 Unmodified _WRGKFKRN_ 0 0 0 LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|34|3|anti-sense LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|34|3|anti-sense LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_2 3 546.3134155273438 2 546.314692 1090.61483 NaN NaN NaN NaN NaN NaN NaN 40.43 1 43.801 43.301 44.301 3.3712 0 0 0 0.40625 1 8049 8049 2.3027 0 1 54608 15717 34184 34202 62860 62860 0.07314799622372448 WRGKFKRN 8 Unmodified _WRGKFKRN_ 0 0 0 LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|34|3|anti-sense LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|34|3|anti-sense LTR83_dup5|chr1:32831436-32831881:-|1.3036498215440622|0.1037857373280826|3.65|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_3 4 546.3146362304688 2 546.314692 1090.61483 NaN NaN NaN NaN NaN NaN NaN 41.351 1 44.588 44.088 45.088 3.2372 0 0 0 0.40625 1 8380 8380 2.3027 0.4585 1 54609 15717 34184 34202 62861 62861 0.07314799622372448 WRGKVRLL 8 Unmodified _WRGKVRLL_ 0 0 0 REV__ENST00000589718.5_1_12:12232564-12240182:+|nuORF REV__ENST00000589718.5_1_12:12232564-12240182:+|nuORF MSMS UPN48_class_I_Rep_2 6 514.3292846679688 2 514.329811 1026.64507 NaN NaN NaN NaN NaN NaN NaN 71.139 1 74.689 74.189 75.189 3.5505 0 0 0 0.40404 1 16578 16578 5.2307 0 1 + 54610 23158 34185 34203 62862 62862 0.13281158287554717 WRGKVRLL 8 Unmodified _WRGKVRLL_ 0 0 0 REV__ENST00000589718.5_1_12:12232564-12240182:+|nuORF REV__ENST00000589718.5_1_12:12232564-12240182:+|nuORF MSMS UPN48_class_I_Rep_3 7 514.3292236328125 2 514.329811 1026.64507 NaN NaN NaN NaN NaN NaN NaN 71.114 1 74.633 74.133 75.133 3.5185 0 0 0 0.40404 1 16492 16492 5.2307 0 1 + 54611 23158 34185 34203 62863 62863 0.13281158287554717 WRGRAKVK 8 Unmodified _WRGRAKVK_ 0 0 0 REV__ENST00000560305.5_1_15:40855021-40855129:-|nuORF REV__ENST00000560305.5_1_15:40855021-40855129:-|nuORF MSMS UPN48_class_I_Rep_1 5 500.8111267089844 2 500.811785 999.609017 NaN NaN NaN NaN NaN NaN NaN 25.906 1 29.473 28.973 29.973 3.5667 0 0 0 0.40746 1 3091 3091 0.69038 0 1 + 54612 23018 34186 34204 62864 62864 0.10919701110685764 WRGRLLKG 8 Unmodified _WRGRLLKG_ 0 0 0 REV__ENST00000388747.8_1_9:130692031-130693066:-|nuORF REV__ENST00000388747.8_1_9:130692031-130693066:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 492.7804260253906 2 493.306336 984.598118 0.25564 0.00012611 -1.299 -0.0006408 -1.0434 -0.0005147 493.30614513848326 71.592 0.041031 74.881 74.861 74.902 3.2899 5 3 2 0 0 0 0.72333 1 17507 17507 2.3027 0 1 11319 + 54613 22072 34187 34205 62865 62865 0.10520298736412315 WRHDILVGG 9 Unmodified _WRHDILVGG_ 0 0 0 REV__nc|ENSG00000186474|Q9UKR0-3|KLK12 REV__nc|ENSG00000186474|Q9UKR0-3|KLK12 MULTI-SECPEP UPN47_class_I_Rep_3 4 526.3662719726562 2 526.785433 1051.55631 0.38565 0.00020316 -1.6775 -0.00088371 -1.2919 -0.00068055 527.2859391980212 79.985 0.15401 83.294 83.236 83.39 3.309 21 17 2 0 0 0 0.12281 1 20017 20017 4.3292 0.38484 1 109760 + 54614 20892 34188 34206 62866 62866 0.03259698257238597 WRHDILVGG 9 Unmodified _WRHDILVGG_ 0 0 0 REV__nc|ENSG00000186474|Q9UKR0-3|KLK12 REV__nc|ENSG00000186474|Q9UKR0-3|KLK12 MULTI-MATCH UPN47_class_I_Rep_2 3 2 526.785433 1051.55631 0.18655 9.8272E-05 -1.6883 -0.00088935 -1.5017 -0.00079108 526.784644480962 79.617 0.044617 82.972 82.962 83.007 3.3554 -0.16096 -9.9092E-06 NaN 4.3292 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 85889 + 54615 20892 34188 34206 0.03259698257238597 WRHFPQYL 8 Unmodified _WRHFPQYL_ 0 0 0 THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|60|1|anti-sense THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|60|1|anti-sense THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|60|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.7952270507812 2 573.795801 1145.57705 0.3633 0.00020846 -0.87044 -0.00049945 -0.50714 -0.00029099 573.7953092850215 63.166 0.28319 66.525 66.284 66.567 3.3595 39 20 2 0 0 0 0.82752 1 14900 14900 16.942 5.4476 1 268500 54616 32923 34189 34207 62867 62867 0.01008288636899124 WRHFPQYL 8 Unmodified _WRHFPQYL_ 0 0 0 THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|60|1|anti-sense THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|60|1|anti-sense THE1B-int_dup3248|chr11:110441246-110442810:+|1.7527887599499452|0.1753961074646867|3.32|151.0|60|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 573.7952880859375 2 573.795801 1145.57705 0.42169 0.00024197 -1.0125 -0.00058098 -0.59083 -0.00033902 573.7955552940671 63.277 0.053505 66.533 66.484 66.537 3.2558 6 3 2 0 0 0 0.82752 1 15001 15001 8.5933 1.304 1 71117 54617 32923 34189 34207 62868 62868 0.01008288636899124 WRHFYRHL 8 Unmodified _WRHFYRHL_ 0 0 0 ENST00000430654.2_1_13:72488086-72488314:-|nuORF ENST00000430654.2_1_13:72488086-72488314:-|nuORF ENST00000430654.2_1_13:72488086-72488314:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 607.3311157226562 2 607.820141 1213.62573 0.57873 0.00035176 0.34626 0.00021047 0.92499 0.00056223 608.3213258602711 45.737 0.062752 45.737 45.713 45.776 0 12 7 2 0 0 0 0.72333 1 9333 9333 0 0 1 334540 54618 6725 34190 34208 62869 62869 0.02746201996660602 WRHGVLLC 8 Unmodified _WRHGVLLC_ 0 0 0 ENST00000607588.1_1_13:52743381-52745380:-|nuORF ENST00000607588.1_1_13:52743381-52745380:-|nuORF ENST00000607588.1_1_13:52743381-52745380:-|nuORF MSMS UPN47_class_I_Rep_2 3 492.2809753417969 2 492.265822 982.517091 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.82 114.32 115.32 3.5226 0 0 0 0.40738 1 27087 27087 0.79363 0 1 54619 7693 34191 34209 62870 62870 0.02513274702016588 WRHQLTSW 8 Unmodified _WRHQLTSW_ 0 0 0 REV__L1MB7_dup18957|chr16:29189250-29190505:-|3.0726642021656945|0.0833137274552517|5.2|151.0|34|3|sense REV__L1MB7_dup18957|chr16:29189250-29190505:-|3.0726642021656945|0.0833137274552517|5.2|151.0|34|3|sense MSMS UPN46_class_I_Rep_3 1 557.28369140625 2 557.283057 1112.55156 NaN NaN NaN NaN NaN NaN NaN 41.998 1 41.998 41.498 42.498 0 0 0 0 0.40746 1 8279 8279 0.69038 0 1 + 54620 26190 34192 34210 62871 62871 -0.00021185885543673066 WRIKPLFF 8 Unmodified _WRIKPLFF_ 0 0 0 HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|386|3|anti-sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|386|3|anti-sense HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|386|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.8302001953125 2 553.829112 1105.64367 NaN NaN NaN NaN NaN NaN NaN 82.298 1 86.005 85.505 86.505 3.7066 0 0 0 0.40581 1 19501 19501 2.8892 1.2366 1 54621 8310 34193 34211 62872 62872 0.09507524198784267 WRILFLYY 8 Unmodified _WRILFLYY_ 0 0 0 REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|42|3|anti-sense REV__LTR10C_dup53|chr2:53961698-53962275:-|2.2489726524250773|0.0270962930594526|6.38|151.0|42|3|anti-sense MSMS UPN47_class_I_Rep_2 3 587.3267822265625 2 587.326402 1172.63825 NaN NaN NaN NaN NaN NaN NaN 67.276 1 70.54 70.04 71.04 3.2636 0 0 0 0.40604 1 16215 16215 2.5775 0 1 + 54622 30785 34194 34212 62873 62873 0.05883800616311419 WRINESSSY 9 Unmodified _WRINESSSY_ 0 0 0 L1ME2z_dup6493|chr19:18481675-18482308:-|1.052068277035559|0.051939697677445|4.34|151.0|21|1|anti-sense L1ME2z_dup6493|chr19:18481675-18482308:-|1.052068277035559|0.051939697677445|4.34|151.0|21|1|anti-sense L1ME2z_dup6493|chr19:18481675-18482308:-|1.052068277035559|0.051939697677445|4.34|151.0|21|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.7308349609375 2 571.26727 1140.51999 0.3448 0.00019697 2.8331 0.0016185 3.1779 0.0018155 571.7714425831283 64.743 0.059044 68.099 68.053 68.112 3.3557 6 5 2 0 0 0 0.12235 1 15387 15387 4.756 2.1785 1 58909 54623 12577 34195 34213 62874 62874 -0.04465223430133847 WRIRKKYFL 9 Unmodified _WRIRKKYFL_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-SECPEP UPN48_class_I_Rep_1 5 437.6911315917969 3 437.267909 1308.7819 -0.040354 -1.7646E-05 -1.2745 -0.00055728 -1.3148 -0.00057492 437.2671724635802 50.531 0.37485 54.056 53.825 54.2 3.5246 38 26 2 0 0 0 0.12429 1 10304 10304 2.7352 0.82882 1 97385 54624 4363 34196 34214 62875 62875 0.13985647447270821 WRIVARTEP 9 Unmodified _WRIVARTEP_ 0 0 0 REV__ENSG00000120054|ENST00000370418|CPN1 REV__ENSG00000120054|ENST00000370418|CPN1 MSMS UPN48_class_I_Rep_3 7 564.3207397460938 2 564.31964 1126.62473 NaN NaN NaN NaN NaN NaN NaN 56.462 1 60.004 59.504 60.504 3.5427 0 0 0 0.39518 1 12062 12062 1.8442 0.51471 1 + 54625 18698 34197 34215 62876 62876 0.06647942837048504 WRIVRRFL 8 Unmodified _WRIVRRFL_ 0 0 0 L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|99|3|sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|99|3|sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|99|3|sense MSMS UPN47_class_I_Rep_2 3 573.3564453125 2 573.35636 1144.69817 NaN NaN NaN NaN NaN NaN NaN 87.678 1 91.125 90.625 91.625 3.4471 0 0 0 0.40746 1 21795 21795 0.69038 0 1 54626 9440 34198 34216 62877 62877 0.1316053607019967 WRKATTVL 8 Unmodified _WRKATTVL_ 0 0 0 REV__ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron REV__ENSG00000198265.12,HELZ,chr17,-,I21.1,67149986,67151045|24|7.1|6|intron MSMS UPN46_class_I_Rep_3 1 487.7911682128906 2 487.792727 973.5709 NaN NaN NaN NaN NaN NaN NaN 76.387 1 76.387 75.887 76.887 0 0 0 0 0.40746 1 17816 17816 0.69038 0 1 + 54627 21119 34199 34217 62878 62878 0.08305770405354451 WRKIVYYLIYL 11 Unmodified _WRKIVYYLIYL_ 0 0 0 L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.96807861328125 3 510.634146 1528.88061 0.35776 0.00018268 0.043981 2.2458E-05 0.40174 0.00020514 510.6340937647705 97.956 0.34886 101.74 101.65 102 3.7861 82 48 3 0 0 0 0.68478 1 24265 24265 0.094841 0 1 141330 54628 12096 34200 34218 62879 62879 0.13732205901669658 WRKIVYYLIYL 11 Unmodified _WRKIVYYLIYL_ 0 0 0 L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense L1MDa_dup1447|chr3:148892971-148894796:+|1.418830982370414|0.3438517483496587|2.04|143.0|124|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.9683532714844 3 510.634146 1528.88061 0.31974 0.00016327 0.021969 1.1218E-05 0.34171 0.00017449 510.63416860961615 95.771 0.10863 99.552 99.481 99.59 3.7804 24 15 2 0 0 0 0.68478 1 22754 22754 0.094841 0 1 136250 54629 12096 34200 34218 62880 62880 0.13732205901669658 WRKNYFYK 8 Unmodified _WRKNYFYK_ 0 0 0 REV__L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|5|1|sense REV__L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|5|1|sense MSMS UPN47_class_I_Rep_2 3 602.8176879882812 2 602.816733 1203.61891 NaN NaN NaN NaN NaN NaN NaN 65.271 1 68.527 68.027 69.027 3.2556 0 0 0 0.40746 1 15606 15606 0.69038 0 1 + 54630 25921 34201 34219 62881 62881 0.02524844325421327 WRKQRLWKWW 10 Unmodified _WRKQRLWKWW_ 0 0 0 chr12:54283132-54283827|151|26.65|0.0|21.35|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|151|26.65|0.0|21.35|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|151|26.65|0.0|21.35|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS UPN47_class_I_Rep_1 2 525.3092041015625 3 524.961478 1571.86261 -0.052181 -2.7393E-05 0.13717 7.2011E-05 0.084992 4.4617E-05 525.2957786484142 42.083 0.42319 45.762 45.591 46.014 3.6792 38 28 2 0 0 0 0.56523 1 8477 8477 0.13989 0.056541 1 74743 54631 581 34202 34220 62882 62882 0.0995492849015136 WRKRWRRWRWS 11 Unmodified _WRKRWRRWRWS_ 0 0 0 ENST00000261427.9_1_4:39699814-39699901:+|nuORF ENST00000261427.9_1_4:39699814-39699901:+|nuORF ENST00000261427.9_1_4:39699814-39699901:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 586.6629028320312 3 586.994064 1757.96036 0.045813 2.6892E-05 3.9909 0.0023426 4.0367 0.0023695 586.9968730043361 34.063 0.19023 37.503 37.328 37.518 3.4398 13 10 2 0 0 0 22.551 1 6084 6084 0 0 1 38944 54632 5957 34203 34221 62883 62883 0.11170130138862078 WRKVERAKRTN 11 Unmodified _WRKVERAKRTN_ 0 0 0 MSTD_dup3941|chr8:66727473-66727846:+|1.6681185685153217|0.0054719634860998|8.25|151.0|23|3|anti-sense MSTD_dup3941|chr8:66727473-66727846:+|1.6681185685153217|0.0054719634860998|8.25|151.0|23|3|anti-sense MSTD_dup3941|chr8:66727473-66727846:+|1.6681185685153217|0.0054719634860998|8.25|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.787353515625 3 481.947898 1442.82186 NaN NaN NaN NaN NaN NaN NaN 28.419 1 32.185 31.685 32.685 3.7662 0 0 0 0.38417 1 4374 4374 0.50596 0.051438 1 54633 16597 34204 34222 62884 62884 0.11816542379870043 WRKWILLL 8 Unmodified _WRKWILLL_ 0 0 0 L1MD1_dup1041|chr2:233422768-233423549:-|1.381416391342705|0.0421290224036203|5.04|151.0|12|2|sense L1MD1_dup1041|chr2:233422768-233423549:-|1.381416391342705|0.0421290224036203|5.04|151.0|12|2|sense L1MD1_dup1041|chr2:233422768-233423549:-|1.381416391342705|0.0421290224036203|5.04|151.0|12|2|sense MSMS UPN47_class_I_Rep_3 4 564.35986328125 2 564.358037 1126.70152 NaN NaN NaN NaN NaN NaN NaN 82.005 1 85.342 84.842 85.842 3.337 0 0 0 0.40746 1 20545 20545 0.69038 0 1 54634 11897 34205 34223 62885 62885 0.14323786124214166 WRLAKPLPVW 10 Unmodified _WRLAKPLPVW_ 0 0 0 REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF MSMS UPN47_class_I_Rep_3 4 633.3693237304688 2 633.3795 1264.74445 NaN NaN NaN NaN NaN NaN NaN 89.693 1 93.091 92.591 93.591 3.3976 0 0 0 0.53105 1 22487 22487 1.8442 0 1 + 54635 22633 34206 34224 62886 62886 0.12266556181634769 WRLCIACY 8 Unmodified _WRLCIACY_ 0 0 0 REV__ENSG00000151553.15,FAM160B1,chr10,+,I12.1,114847234,114848646|37|6.92|1|intron REV__ENSG00000151553.15,FAM160B1,chr10,+,I12.1,114847234,114848646|37|6.92|1|intron MSMS UPN47_class_I_Rep_3 4 514.2460327148438 2 514.24624 1026.47793 NaN NaN NaN NaN NaN NaN NaN 37.412 1 40.659 40.159 41.159 3.247 0 0 0 0.40625 1 7171 7171 2.3027 0 1 + 54636 19660 34207 34225 62887 62887 -0.03425193643874991 WRLELLGTHRQ 11 Unmodified _WRLELLGTHRQ_ 0 0 0 REV__L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|313|2|anti-sense REV__L1PA5_dup2144|chr3:120732566-120738623:-|1.2036562852867807|0.1816485294334393|2.73|151.0|313|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 470.253662109375 3 470.265115 1407.77352 -0.33328 -0.00015673 -1.3753 -0.00064676 -1.7086 -0.00080349 470.26446218792444 24.347 0.31812 27.813 27.694 28.012 3.4655 38 29 2 0 0 0 0.6724 1 3257 3257 1.2148 0.10508 1 46136 + 54637 29728 34208 34226 62888 62888 0.08594048739996651 WRLFFTLF 8 Unmodified _WRLFFTLF_ 0 0 0 REV__ENST00000320954.10_2_3:33184132-33184324:+|nuORF REV__ENST00000320954.10_2_3:33184132-33184324:+|nuORF MSMS UPN48_class_I_Rep_3 7 565.3154907226562 2 565.313295 1128.61204 NaN NaN NaN NaN NaN NaN NaN 26.351 1 30.117 29.617 30.617 3.7663 0 0 0 0.40746 1 3324 3324 0.69038 0 1 + 54638 21737 34209 34227 62889 62889 0.052875314448328936 WRLFLYIFLIF 11 Unmodified _WRLFLYIFLIF_ 0 0 0 REV__AluSx_dup69638|chr11:17338979-17339286:-|1.2356687083794995|0.0585074972319428|4.4|151.0|14|2|anti-sense REV__AluSx_dup69638|chr11:17338979-17339286:-|1.2356687083794995|0.0585074972319428|4.4|151.0|14|2|anti-sense MSMS UPN48_class_I_Rep_2 6 510.9690246582031 3 510.967236 1529.87988 NaN NaN NaN NaN NaN NaN NaN 98.016 1 101.8 101.3 102.3 3.779 0 0 0 0.38417 1 23283 23283 0.45452 0 1 + 54639 17149 34210 34228 62890 62890 0.13613411252572405 WRLKMFLL 8 Unmodified _WRLKMFLL_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MSMS UPN48_class_I_Rep_2 6 553.8289184570312 2 553.830798 1105.64704 NaN NaN NaN NaN NaN NaN NaN 79.226 1 82.859 82.359 83.359 3.6331 0 0 0 0.40738 1 18813 18813 0.79363 0 1 + 54640 19624 34211 34229 62891 62891 0.09844450981154296 WRLKMFLL 8 Unmodified _WRLKMFLL_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MSMS UPN48_class_I_Rep_2 6 553.8301391601562 2 553.830798 1105.64704 NaN NaN NaN NaN NaN NaN NaN 79.681 1 83.314 82.814 83.814 3.6331 0 0 0 0.40738 1 18939 18939 0.79363 0 1 + 54641 19624 34211 34229 62892 62892 0.09844450981154296 WRLKVDIW 8 Unmodified _WRLKVDIW_ 0 0 0 REV__ENSG00000169684|ENST00000299565|CHRNA5 REV__ENSG00000169684|ENST00000299565|CHRNA5 MSMS UPN48_class_I_Rep_1 5 558.3212890625 2 558.321651 1114.62875 NaN NaN NaN NaN NaN NaN NaN 25.413 1 28.98 28.48 29.48 3.5667 0 0 0 0.40738 1 2958 2958 0.79363 0 1 + 54642 20323 34212 34230 62893 62893 0.07602032330783004 WRLLILIATF 10 Unmodified _WRLLILIATF_ 0 0 0 REV__Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|48|3|sense REV__Tigger1_dup11890|chr21:42976090-42977537:-|3.597463314152449|0.4388739935047295|3.04|151.0|48|3|sense MSMS UPN47_class_I_Rep_2 3 623.3892211914062 2 623.389534 1244.76451 NaN NaN NaN NaN NaN NaN NaN 103.77 1 107.3 106.8 107.8 3.5289 0 0 0 0.53105 1 25220 25220 1.4819 0 1 + 54643 32366 34213 34231 62894 62894 0.15192307121606063 WRLLRPERR 9 Unmodified _WRLLRPERR_ 0 0 0 ENST00000389279.7_1_8:22462563-22463297:+|nuORF ENST00000389279.7_1_8:22462563-22463297:+|nuORF ENST00000389279.7_1_8:22462563-22463297:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 641.3851928710938 2 641.38618 1280.75781 0.74886 0.00048031 -2.1087 -0.0013525 -1.3598 -0.00087216 641.3847974394249 98.133 0.049095 98.133 98.11 98.159 0 5 3 2 0 0 0 0.50088 1 23896 23896 0.52476 0 1 69687 54644 6510 34214 34232 62895 62895 0.12865807013577069 WRLLRPERR 9 Unmodified _WRLLRPERR_ 0 0 0 ENST00000389279.7_1_8:22462563-22463297:+|nuORF ENST00000389279.7_1_8:22462563-22463297:+|nuORF ENST00000389279.7_1_8:22462563-22463297:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 641.38618 1280.75781 0.51467 0.0003301 -1.4353 -0.0009206 -0.92066 -0.0005905 641.3851128238565 94.47 0.034843 97.876 97.854 97.889 3.4068 -0.11142 0.00044252 NaN 0.52476 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 39926 54645 6510 34214 34232 0.12865807013577069 WRLPLHVHSLP 11 Unmodified _WRLPLHVHSLP_ 0 0 0 L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|50|1|anti-sense L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|50|1|anti-sense L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.5969543457031 3 452.262935 1353.76697 0.17101 7.734E-05 0.17189 7.7738E-05 0.3429 0.00015508 452.263024106249 60.151 0.5848 63.625 63.25 63.835 3.4737 73 42 3 0 0 0 0.68132 1 13286 13286 0.40827 0 1 144620 54646 11096 34215 34233 62896 62896 0.10424155579289618 WRLPLHVHSLP 11 Unmodified _WRLPLHVHSLP_ 0 0 0 L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|50|1|anti-sense L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|50|1|anti-sense L1MC1_dup11379|chr15:101190361-101191758:+|2.640681982528808|0.1720320904463471|3.94|151.0|50|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.59722900390625 3 452.262935 1353.76697 0.15067 6.8141E-05 0.11643 5.2657E-05 0.2671 0.0001208 452.26302629029584 59.883 0.56036 63.399 63.296 63.857 3.5169 89 47 3 0 0 0 0.68132 1 13106 13106 0.40827 0 1 189960 54647 11096 34215 34233 62897 62897 0.10424155579289618 WRLRFKIT 8 Unmodified _WRLRFKIT_ 0 0 0 REV__THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|39|3|sense REV__THE1B-int_dup28|chr1:50755037-50756603:-|1.6107979842876723|0.0418713049473892|5.27|151.0|39|3|sense MSMS UPN47_class_I_Rep_2 3 560.3248291015625 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 63.522 1 66.777 66.277 67.277 3.2558 0 0 0 0.4044 1 15076 15076 4.756 0.81161 1 + 54648 32203 34216 34234 62898 62898 0.11669427459014514 WRMHQKKKK 9 Unmodified _WRMHQKKKK_ 0 0 0 L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|36|2|sense L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|36|2|sense L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|36|2|sense MSMS UPN48_class_I_Rep_2 6 635.371826171875 2 635.371684 1268.72881 NaN NaN NaN NaN NaN NaN NaN 51.088 1 54.756 54.256 55.256 3.6679 0 0 0 0.4007 1 10495 10495 0.52476 0.066424 1 54649 8943 34217 34235 62899 62899 0.10519946392946622 WRMKRKTILWK 11 Unmodified _WRMKRKTILWK_ 0 0 0 ENST00000346991.9_1_15:40939257-40942558:+|nuORF ENST00000346991.9_1_15:40939257-40942558:+|nuORF ENST00000346991.9_1_15:40939257-40942558:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 516.3132934570312 3 515.978141 1544.91259 0.34357 0.00017727 0.10888 5.618E-05 0.45245 0.00023345 516.3126546697642 102.64 0.27274 106.42 106.31 106.58 3.776 67 36 2 0 0 0 0.68478 1 24289 24289 0.094841 0 1 311420 54650 6264 34218 34236 62900 62900 0.1619329510378975 WRMLRKLKNRT 11 Unmodified _WRMLRKLKNRT_ 0 0 0 L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 501.302001953125 3 501.301395 1500.88236 0.31102 0.00015592 1.2896 0.00064649 1.6006 0.00080241 501.3020526691097 105.44 0.099258 105.44 105.4 105.5 0 15 10 2 0 0 0 0.68478 1 25725 25725 0.094841 0 1 1978800 54651 9694 34219 34237 62901 62901 0.15194936438592777 WRMLRKLKNRT 11 Unmodified _WRMLRKLKNRT_ 0 0 0 L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 501.301395 1500.88236 0.31102 0.00015592 1.2896 0.00064649 1.6006 0.00080241 501.3020526691097 105.44 0.099258 105.44 105.4 105.5 0 0.12549 -0.0013483 NaN 0.094841 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1978800 54652 9694 34219 34237 0.15194936438592777 WRMLRKLKNRT 11 Unmodified _WRMLRKLKNRT_ 0 0 0 L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 501.301395 1500.88236 0.30655 0.00015367 2.2425 0.0011242 2.5491 0.0012779 501.6369473118367 101.7 0.036224 105.49 105.47 105.5 3.7888 0.17512 8.4743E-05 NaN 0.094841 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 57747 54653 9694 34219 34237 0.15194936438592777 WRMLRKLKNRT 11 Unmodified _WRMLRKLKNRT_ 0 0 0 L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 501.301395 1500.88236 0.19341 9.6956E-05 2.1829 0.0010943 2.3763 0.0011912 501.63677231199927 101.48 0.073647 105.09 105.03 105.11 3.612 -0.21919 -4.9376E-06 NaN 0.094841 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 355470 54654 9694 34219 34237 0.15194936438592777 WRMLRKLKNRT 11 Unmodified _WRMLRKLKNRT_ 0 0 0 L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense L1MA4_dup4985|chr8:102370481-102371250:-|1.203839222762875|0.025651420398532|5.55|151.0|12|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 501.301395 1500.88236 0.26132 0.000131 2.8807 0.0014441 3.1421 0.0015751 501.636662867832 101.41 0.033913 105.23 105.21 105.25 3.8153 -0.081426 0.0010446 NaN 0.094841 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 396150 54655 9694 34219 34237 0.15194936438592777 WRMQPEER 8 Unmodified _WRMQPEER_ 0 0 0 ENST00000486187.5_1_10:43090126-43133998:-|nuORF ENST00000486187.5_1_10:43090126-43133998:-|nuORF ENST00000486187.5_1_10:43090126-43133998:-|nuORF MSMS UPN48_class_I_Rep_3 7 566.2725219726562 2 566.271832 1130.52911 NaN NaN NaN NaN NaN NaN NaN 95.814 1 99.722 99.222 100.22 3.9084 0 0 0 0.40625 1 22710 22710 2.3027 0 1 54656 7037 34220 34238 62902 62902 -0.03093153345457722 WRNCNYND 8 Unmodified _WRNCNYND_ 0 0 0 REV__nc|ENSG00000150556|Q8NI32|LYPD6B REV__nc|ENSG00000150556|Q8NI32|LYPD6B MSMS UPN47_class_I_Rep_1 2 542.7171630859375 2 542.71689 1083.41923 NaN NaN NaN NaN NaN NaN NaN 49.016 1 52.675 52.175 53.175 3.6592 0 0 0 0.40604 1 10627 10627 2.5775 0 1 + 54657 19633 34221 34239 62903 62903 -0.11914578684650223 WRNLANMTSA 10 Unmodified _WRNLANMTSA_ 0 0 0 L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|13|1|sense L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|13|1|sense L1MC3_dup11640|chr17:21036056-21037755:+|3.8623283172780303|0.1326859679279909|4.86|151.0|13|1|sense MSMS UPN47_class_I_Rep_2 3 582.2847900390625 2 582.28494 1162.55533 NaN NaN NaN NaN NaN NaN NaN 32.863 1 36.317 35.817 36.817 3.4547 0 0 0 0.53105 1 5749 5749 1.4819 0 1 54658 11303 34222 34240 62904 62904 -0.019448841739858835 WRNRMQRSY 9 Unmodified _WRNRMQRSY_ 0 0 0 L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense MSMS UPN47_class_I_Rep_1 2 432.88519287109375 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 98.595 1 102.39 101.89 102.89 3.7926 0 0 0 0.38639 1 24406 24406 2.2828 0 1 54659 13212 34223 34241 62905 62905 -0.005432819228872177 WRNRMQRSY 9 Unmodified _WRNRMQRSY_ 0 0 0 L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 432.8851013183594 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 97.653 1 101.14 100.64 101.64 3.4836 0 0 0 0.39428 1 23962 23962 1.0715 0 1 54660 13212 34223 34241 62906 62906 -0.005432819228872177 WRNRMQRSY 9 Unmodified _WRNRMQRSY_ 0 0 0 L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 432.8851318359375 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 97.914 1 101.4 100.9 101.9 3.4836 0 0 0 0.39428 1 24017 24017 1.0715 0 1 54661 13212 34223 34241 62907 62907 -0.005432819228872177 WRNRMQRSY 9 Unmodified _WRNRMQRSY_ 0 0 0 L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense MSMS UPN48_class_I_Rep_1 5 432.8851623535156 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 97.43 1 101.04 100.54 101.54 3.6088 0 0 0 0.39428 1 23503 23503 1.0715 0 1 54662 13212 34223 34241 62908 62908 -0.005432819228872177 WRNRMQRSY 9 Unmodified _WRNRMQRSY_ 0 0 0 L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|35|3|sense MSMS UPN48_class_I_Rep_2 6 432.88525390625 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 97.187 1 100.97 100.47 101.47 3.779 0 0 0 0.39428 1 23097 23097 1.0715 0 1 54663 13212 34223 34241 62909 62909 -0.005432819228872177 WRNRQKNKRR 10 Unmodified _WRNRQKNKRR_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 481.28350830078125 3 481.283503 1440.82868 0.27012 0.00013 -0.1116 -5.3711E-05 0.15852 7.6293E-05 481.28329064427487 98.329 0.16333 98.329 98.193 98.356 0 42 20 3 0 0 0 0.5652 1 23919 23919 0.15932 0.064481 1 807050 54664 2741 34224 34242 62910 62910 0.12589900051079894 WRNRQKNKRR 10 Unmodified _WRNRQKNKRR_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MULTI-MSMS UPN46_class_I_Rep_3 1 481.28350830078125 3 481.283503 1440.82868 0.27022 0.00013005 -0.027408 -1.3191E-05 0.24281 0.00011686 481.2834448568705 98.905 0.15599 98.905 98.805 98.961 0 46 18 3 0 0 0 0.5652 1 24081 24081 0.15932 0 1 707760 54665 2741 34224 34242 62911 62911 0.12589900051079894 WRNRQKNKRR 10 Unmodified _WRNRQKNKRR_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 481.61785888671875 3 481.283503 1440.82868 0.24813 0.00011942 -0.13864 -6.6724E-05 0.10949 5.2697E-05 481.28337637556626 94.597 1.1942 98.347 98.142 99.336 3.7508 273 161 3 0 0 0 0.5652 4 23466 23466;23494;23574;23604 0.15932 0.064481 1 177450 54666 2741 34224 34242 62912;62913;62914;62915 62912 0.12589900051079894 WRNRQKNKRR 10 Unmodified _WRNRQKNKRR_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MULTI-SECPEP UPN48_class_I_Rep_1 5 481.61798095703125 3 481.283503 1440.82868 0.11933 5.7431E-05 0.033512 1.6129E-05 0.15284 7.356E-05 481.28355878385236 95.165 0.25243 98.782 98.71 98.962 3.6167 55 30 2 0 0 0 0.84575 1 22895 22895 0.15932 0.15932 1 321760 54667 2741 34224 34242 62916 62916 0.12589900051079894 WRNRQKNKRR 10 Unmodified _WRNRQKNKRR_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MULTI-MATCH UPN47_class_I_Rep_3 4 3 481.283503 1440.82868 0.15775 7.5923E-05 -0.045859 -2.2071E-05 0.11189 5.3852E-05 481.28343735509554 94.888 0.86847 98.294 97.51 98.378 3.4068 -0.02973 2.7221E-05 NaN 0.15932 181 122 2 NaN NaN NaN NaN 0 NaN NaN 0 357330 54668 2741 34224 34242 0.12589900051079894 WRNRQKNKRR 10 Unmodified _WRNRQKNKRR_ 0 0 0 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant;ENSG00000132275|ENST00000254605|RRP8 RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant RRP8|p.L426Cfs*12|1|0.85|ENSG00000132275|chr11:6600242-6600242|G/-|frameshift_variant MULTI-MATCH UPN48_class_I_Rep_3 7 3 481.283503 1440.82868 0.2268 0.00010916 -0.055686 -2.6801E-05 0.17112 8.2357E-05 481.28349711883504 94.425 1.7839 98.326 97.522 99.306 3.9016 0.0020216 1.3032E-05 NaN 0.15932 340 242 2 NaN NaN NaN NaN 0 NaN NaN 0 498350 54669 2741 34224 34242 0.12589900051079894 WRNWKTFTL 9 Unmodified _WRNWKTFTL_ 0 0 0 L1PA7_dup1679|chr2:184613686-184615259:+|1.911626754561316|0.0065390184950288|8.19|147.0|28|2|sense L1PA7_dup1679|chr2:184613686-184615259:+|1.911626754561316|0.0065390184950288|8.19|147.0|28|2|sense L1PA7_dup1679|chr2:184613686-184615259:+|1.911626754561316|0.0065390184950288|8.19|147.0|28|2|sense MSMS UPN48_class_I_Rep_3 7 626.7994384765625 2 626.33529 1250.65603 NaN NaN NaN NaN NaN NaN NaN 61.905 1 65.415 64.915 65.915 3.5104 0 0 0 0.38478 1 13718 13718 4.3292 0.73274 1 54670 14775 34225 34243 62917 62917 0.040725158711666154 WRPLLGHI 8 Unmodified _WRPLLGHI_ 0 0 0 L1MA3_dup6489|chr11:77566994-77569808:-|1.2996992197713826|0.0702503898242956|4.21|150.0|169|3|anti-sense L1MA3_dup6489|chr11:77566994-77569808:-|1.2996992197713826|0.0702503898242956|4.21|150.0|169|3|anti-sense L1MA3_dup6489|chr11:77566994-77569808:-|1.2996992197713826|0.0702503898242956|4.21|150.0|169|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2952880859375 2 496.295436 990.57632 0.031049 1.541E-05 0.051939 2.5777E-05 0.082988 4.1187E-05 496.29537631955003 29.322 0.093946 29.322 29.281 29.375 0 12 5 3 0 0 0 0.82752 1 4642 4642 0.79363 0 1 761130 54671 9605 34226 34244 62918 62918 0.08065493987851369 WRPLMLSW 8 Unmodified _WRPLMLSW_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MSMS UPN47_class_I_Rep_1 2 544.7894897460938 2 544.78913 1087.56371 NaN NaN NaN NaN NaN NaN NaN 114.9 1 118.48 117.98 118.98 3.5809 0 0 0 0.40604 1 28407 28407 2.5775 0 1 54672 2268 34227 34245 62919 62919 0.023427145333016597 WRPPLSVK 8 Unmodified _WRPPLSVK_ 0 0 0 HAL1_dup16610|chr12:45936858-45938207:-|2.4215405968510657|0.1648416824538323|3.88|151.0|3|1|sense HAL1_dup16610|chr12:45936858-45938207:-|2.4215405968510657|0.1648416824538323|3.88|151.0|3|1|sense HAL1_dup16610|chr12:45936858-45938207:-|2.4215405968510657|0.1648416824538323|3.88|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 491.7962341308594 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 77.6 1 81.122 80.622 81.622 3.5221 0 0 0 0.40753 1 18476 18476 0.6015 0 1 54673 7822 34228 34246 62920 62920 0.08446074267999393 WRPRLAGTV 9 Unmodified _WRPRLAGTV_ 0 0 0 REV__ENST00000562303.5_1_15:41810158-41810488:-|nuORF REV__ENST00000562303.5_1_15:41810158-41810488:-|nuORF MSMS UPN46_class_I_Rep_3 1 528.2488403320312 2 528.309075 1054.6036 NaN NaN NaN NaN NaN NaN NaN 81.258 1 81.258 80.758 81.758 0 0 0 0 0.37476 1 19183 19183 6.7232 0 1 + 54674 18243 34229 34247 62921 62921 0.0784797752819486 WRPRLYVP 8 Unmodified _WRPRLYVP_ 0 0 0 REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF MSMS UPN47_class_I_Rep_1 2 543.813720703125 2 543.813993 1085.61343 NaN NaN NaN NaN NaN NaN NaN 76.253 1 79.668 79.168 80.168 3.4149 0 0 0 0.40738 1 18861 18861 0.79363 0.10326 1 + 54675 22892 34230 34248 62922 62922 0.07405165533600666 WRPRWCCTT 9 Unmodified _WRPRWCCTT_ 0 0 0 REV__ENST00000417456.1_1_1:35442207-35442396:-|nuORF REV__ENST00000417456.1_1_1:35442207-35442396:-|nuORF MSMS UPN47_class_I_Rep_2 3 604.7752075195312 2 604.776228 1207.5379 NaN NaN NaN NaN NaN NaN NaN 25.409 1 28.892 28.392 29.392 3.483 0 0 0 0.39428 1 3522 3522 2.0598 0 1 + 54676 22225 34231 34249 62923 62923 -0.057565029806482926 WRPVLAHL 8 Unmodified _WRPVLAHL_ 0 0 0 REV__L1MA3_dup7174|chr13:75616720-75618880:-|1.1214102927612022|0.1486582148449027|2.92|151.0|43|2|sense REV__L1MA3_dup7174|chr13:75616720-75618880:-|1.1214102927612022|0.1486582148449027|2.92|151.0|43|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955017089844 2 496.295436 990.57632 0.30691 0.00015232 -0.01947 -9.6629E-06 0.28744 0.00014266 496.2954086584618 110.43 0.098724 110.43 110.38 110.48 0 17 9 2 0 0 0 0.82752 1 27199 27199 0.69038 0 1 474540 + 54677 25104 34232 34250 62924 62924 0.08065493987828631 WRPVRRAR 8 Unmodified _WRPVRRAR_ 0 0 0 REV__ENST00000445369.2_1_16:3062740-3063043:+|nuORF REV__ENST00000445369.2_1_16:3062740-3063043:+|nuORF MSMS UPN47_class_I_Rep_2 3 548.8350219726562 2 548.833583 1095.65261 NaN NaN NaN NaN NaN NaN NaN 118.44 1 121.92 121.42 122.42 3.4822 0 0 0 0.40746 1 28983 28983 0.69038 0 1 + 54678 22354 34233 34251 62925 62925 0.1086131060783373 WRQAKCPS 8 Unmodified _WRQAKCPS_ 0 0 0 L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|57|3|sense L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|57|3|sense L1MA4_dup7777|chr12:101815722-101817265:+|5.084286444651615|0.0371124252108316|7.1|151.0|57|3|sense MSMS UPN46_class_I_Rep_3 1 488.259033203125 2 488.245086 974.47562 NaN NaN NaN NaN NaN NaN NaN 32.5 1 32.5 32 33 0 0 0 0 0.40625 1 5568 5568 2.3027 0.24298 1 54679 9726 34234 34252 62926 62926 -0.012639060573292227 WRQGVPLL 8 Unmodified _WRQGVPLL_ 0 0 0 L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|276|2|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|276|2|anti-sense L1PA10_dup6011|chr15:49948556-49954132:-|15.193545402074564|0.018671703028937|9.67|151.0|276|2|anti-sense MSMS UPN47_class_I_Rep_2 3 484.7872009277344 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 44.765 1 48.121 47.621 48.621 3.3556 0 0 0 0.40738 1 9368 9368 0.79363 0 1 54680 13612 34235 34253 62927 62927 0.07525787750955715 WRQKRNLY 8 Unmodified _WRQKRNLY_ 0 0 0 REV__MER11A_dup939|chr21:36267664-36268700:-|3.100484257152197|0.3087685370078078|3.33|151.0|45|1|anti-sense REV__MER11A_dup939|chr21:36267664-36268700:-|3.100484257152197|0.3087685370078078|3.33|151.0|45|1|anti-sense MSMS UPN47_class_I_Rep_2 3 582.3243408203125 2 582.325257 1162.63596 NaN NaN NaN NaN NaN NaN NaN 49.16 1 52.506 52.006 53.006 3.3465 0 0 0 0.40746 1 10693 10693 0.69038 0 1 + 54681 31091 34236 34254 62928 62928 0.06114764931226091 WRQPAPIE 8 Unmodified _WRQPAPIE_ 0 0 0 REV__ENST00000463837.5_1_11:64108158-64108420:+|nuORF REV__ENST00000463837.5_1_11:64108158-64108420:+|nuORF MSMS UPN46_class_I_Rep_3 1 498.79669189453125 2 498.766709 995.518865 NaN NaN NaN NaN NaN NaN NaN 64.957 1 64.957 64.457 65.457 0 0 0 0 0.40404 1 14657 14657 5.2307 0 1 + 54682 22453 34237 34255 62929 62929 0.02092606991595858 WRQPCPLLF 9 Unmodified _WRQPCPLLF_ 0 0 0 REV__L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|371|3|anti-sense REV__L1PA5_dup4830|chr6:161172645-161178755:-|2.329024660323624|0.1116287520672173|4.38|151.0|371|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 580.3099365234375 2 580.307687 1158.60082 0.4905 0.00028464 4.3839 0.002544 4.8744 0.0028286 580.3105607953838 67.812 0.052437 71.308 71.286 71.338 3.4964 7 5 2 0 0 0 0.10341 1 15600 15600 16.942 2.104 1 74417 + 54683 29767 34238 34256 62930 62930 0.02786386079037584 WRQPVFYYRR 10 Unmodified _WRQPVFYYRR_ 0 0 0 ENST00000376946.2_1_10:22209591-22217997:-|nuORF;ENSG00000136770|ENST00000376980|DNAJC1 ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF MSMS UPN48_class_I_Rep_3 7 490.9287414550781 3 490.929955 1469.76804 NaN NaN NaN NaN NaN NaN NaN 30.945 1 34.66 34.16 35.16 3.7146 0 0 0 0.53105 1 4520 4520 0.13989 0 1 54684 2986 34239 34257 62931 62931 0.05194369948139865 WRQVAPLL 8 Unmodified _WRQVAPLL_ 0 0 0 REV__MLT1K_dup2705|chr3:11447486-11447892:-|1.6766356165419376|0.0123922799948314|7.08|151.0|6|2|sense REV__MLT1K_dup2705|chr3:11447486-11447892:-|1.6766356165419376|0.0123922799948314|7.08|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 491.8009948730469 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 59.396 1 62.876 62.376 63.376 3.4801 0 0 0 0.38547 1 13047 13047 13.508 0 1 + 54685 31791 34240 34258 62932 62932 0.08446074267999393 WRQVAPLL 8 Unmodified _WRQVAPLL_ 0 0 0 REV__MLT1K_dup2705|chr3:11447486-11447892:-|1.6766356165419376|0.0123922799948314|7.08|151.0|6|2|sense REV__MLT1K_dup2705|chr3:11447486-11447892:-|1.6766356165419376|0.0123922799948314|7.08|151.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 491.7980041503906 2 491.795269 981.575986 0.20562 0.00010112 3.6365 0.0017884 3.8421 0.0018895 491.7971447727939 59.226 0.57115 62.749 62.398 62.969 3.5231 63 37 2 0 0 0 0.82752 2 12866 12866;12899 18.135 2.2878 1 222720 + 54686 31791 34240 34258 62933;62934 62933 0.08446074267999393 WRRAAHLA 8 Unmodified _WRRAAHLA_ 0 0 0 ENST00000464559.1_1_2:113956206-113958989:+|nuORF ENST00000464559.1_1_2:113956206-113958989:+|nuORF ENST00000464559.1_1_2:113956206-113958989:+|nuORF MSMS UPN47_class_I_Rep_1 2 490.7640686035156 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 113.92 1 117.49 116.99 117.99 3.572 0 0 0 0.40738 1 28132 28132 0.79363 0.10326 1 54687 6883 34241 34259 62935 62935 0.055825550424856374 WRRAAHLA 8 Unmodified _WRRAAHLA_ 0 0 0 ENST00000464559.1_1_2:113956206-113958989:+|nuORF ENST00000464559.1_1_2:113956206-113958989:+|nuORF ENST00000464559.1_1_2:113956206-113958989:+|nuORF MSMS UPN47_class_I_Rep_3 4 490.78240966796875 2 490.780485 979.546417 NaN NaN NaN NaN NaN NaN NaN 114.85 1 118.33 117.83 118.83 3.4802 0 0 0 0.40604 1 28220 28220 2.5775 0.27475 1 54688 6883 34241 34259 62936 62936 0.055825550424856374 WRRGPPYKS 9 Unmodified _WRRGPPYKS_ 0 0 0 REV__ENST00000463212.1_1_1:896835-897009:+|nuORF REV__ENST00000463212.1_1_1:896835-897009:+|nuORF MSMS UPN48_class_I_Rep_3 7 573.81298828125 2 573.811982 1145.60941 NaN NaN NaN NaN NaN NaN NaN 56.296 1 59.838 59.338 60.338 3.5427 0 0 0 0.39598 1 12011 12011 1.6526 0.17072 1 + 54689 22446 34242 34260 62937 62937 0.042430760398929124 WRRGRRMTQ 9 Unmodified _WRRGRRMTQ_ 0 0 0 REV__ENST00000366971.8_1_1:213031696-213031939:+|nuORF REV__ENST00000366971.8_1_1:213031696-213031939:+|nuORF MSMS UPN47_class_I_Rep_2 3 416.2276306152344 3 416.228118 1245.66253 NaN NaN NaN NaN NaN NaN NaN 78.625 1 81.968 81.468 82.468 3.3428 0 0 0 0.40177 1 19537 19537 0.26902 0 1 + 54690 21920 34243 34261 62938 62938 0.049521305509188096 WRRGRRMTQ 9 Unmodified _WRRGRRMTQ_ 0 0 0 REV__ENST00000366971.8_1_1:213031696-213031939:+|nuORF REV__ENST00000366971.8_1_1:213031696-213031939:+|nuORF MSMS UPN48_class_I_Rep_2 6 416.2276611328125 3 416.228118 1245.66253 NaN NaN NaN NaN NaN NaN NaN 86.698 1 90.415 89.915 90.915 3.7171 0 0 0 0.40177 1 20638 20638 0.26902 0 1 + 54691 21920 34243 34261 62939 62939 0.049521305509188096 WRRHRGLVK 9 Unmodified _WRRHRGLVK_ 0 0 0 ENST00000409887.3_1_17:16350239-16351253:-|nuORF;ENSG00000181350|ENST00000470794|LRRC75A ENST00000409887.3_1_17:16350239-16351253:-|nuORF ENST00000409887.3_1_17:16350239-16351253:-|nuORF MSMS UPN48_class_I_Rep_3 7 604.36767578125 2 604.36779 1206.72103 NaN NaN NaN NaN NaN NaN NaN 115.35 1 118.99 118.49 119.49 3.6433 0 0 0 0.4007 1 27442 27442 0.52476 0 1 54692 4914 34244 34262 62940 62940 0.12593555187663696 WRRIPPAL 8 Unmodified _WRRIPPAL_ 0 0 0 REV__nc|ENSG00000070759|Q96S53-3|TESK2 REV__nc|ENSG00000070759|Q96S53-3|TESK2 MULTI-MSMS UPN47_class_I_Rep_1 2 504.808837890625 2 504.808711 1007.60287 0.32609 0.00016461 -0.017974 -9.0733E-06 0.30812 0.00015554 504.8086377315327 108.99 0.25585 112.59 112.55 112.8 3.6046 29 19 3 0 0 0 0.82752 1 26849 26849 0 0 1 62935000 + 54693 17803 34245 34263 62941 62941 0.09937182879150441 WRRIPPAL 8 Unmodified _WRRIPPAL_ 0 0 0 REV__nc|ENSG00000070759|Q96S53-3|TESK2 REV__nc|ENSG00000070759|Q96S53-3|TESK2 MULTI-MATCH UPN46_class_I_Rep_3 1 2 504.808711 1007.60287 0.31434 0.00015868 -0.6406 -0.00032338 -0.32626 -0.0001647 504.8085104842374 112.62 0.068909 112.62 112.6 112.66 0 0.020851 -0.00088208 NaN 0 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 231190 + 54694 17803 34245 34263 0.09937182879150441 WRRIPPAL 8 Unmodified _WRRIPPAL_ 0 0 0 REV__nc|ENSG00000070759|Q96S53-3|TESK2 REV__nc|ENSG00000070759|Q96S53-3|TESK2 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 504.808711 1007.60287 0.30398 0.00015345 0.3108 0.0001569 0.61479 0.00031035 504.80877697282784 108.77 0.60397 112.45 112.21 112.81 3.6746 -0.15201 7.8466E-05 NaN 0 244 55 5 NaN NaN NaN NaN 0 NaN NaN 0 202620000 + 54695 17803 34245 34263 0.09937182879150441 WRRIPPAL 8 Unmodified _WRRIPPAL_ 0 0 0 REV__nc|ENSG00000070759|Q96S53-3|TESK2 REV__nc|ENSG00000070759|Q96S53-3|TESK2 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 504.808711 1007.60287 0.26813 0.00013535 0.18071 9.1224E-05 0.44884 0.00022658 504.80870493271675 108.86 0.30588 112.53 112.51 112.81 3.6751 -0.068486 -5.2877E-05 NaN 0 90 33 3 NaN NaN NaN NaN 0 NaN NaN 0 103430000 + 54696 17803 34245 34263 0.09937182879150441 WRRKHPRT 8 Unmodified _WRRKHPRT_ 0 0 0 nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1 nc|ENSG00000100813|Q9UKV3-5|ACIN1 nc|ENSG00000100813|Q9UKV3-5|ACIN1 MSMS UPN48_class_I_Rep_2 6 568.734619140625 2 568.83104 1135.64753 NaN NaN NaN NaN NaN NaN NaN 112.6 1 116.26 115.76 116.76 3.6648 0 0 0 0.40746 1 26835 26835 0.69038 0 1 54697 16649 34246 34264 62942 62942 0.08513006745192797 WRRKIMIL 8 Unmodified _WRRKIMIL_ 0 0 0 Tigger3b_dup965|chr2:233362780-233363978:+|2.190584740481426|0.0328069220198703|6.06|151.0|28|2|sense Tigger3b_dup965|chr2:233362780-233363978:+|2.190584740481426|0.0328069220198703|6.06|151.0|28|2|sense Tigger3b_dup965|chr2:233362780-233363978:+|2.190584740481426|0.0328069220198703|6.06|151.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 558.34716796875 2 558.347146 1114.67974 NaN NaN NaN NaN NaN NaN NaN 27.218 1 30.849 30.349 31.349 3.6311 0 0 0 0.40798 1 3575 3575 0 0 1 54698 33411 34247 34265 62943 62943 0.1269865810400006 WRRKRRWRRVR 11 Unmodified _WRRKRRWRRVR_ 0 0 0 ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000283093|ENST00000634648|CENPVL2 ENSG00000283093|ENST00000634648|CENPVL2 MULTI-SECPEP UPN48_class_I_Rep_3 7 570.3515625 3 571.020725 1710.04034 0.46451 0.00026524 -1.1587 -0.00066165 -0.69421 -0.00039641 571.0201675763984 107.3 0.12428 110.98 110.91 111.04 3.6813 13 7 3 0 0 0 22.551 1 25310 25310 0 0 1 1872100 54699 5654 34248 34266 62944 62944 0.21372616532676147 WRRLFGRRL 9 Unmodified _WRRLFGRRL_ 0 0 0 ENST00000483182.5_1_1:38478406-38483425:+|nuORF ENST00000483182.5_1_1:38478406-38483425:+|nuORF ENST00000483182.5_1_1:38478406-38483425:+|nuORF MSMS UPN47_class_I_Rep_3 4 630.7223510742188 2 630.38344 1258.75233 NaN NaN NaN NaN NaN NaN NaN 68.501 1 71.699 71.199 72.199 3.1977 0 0 0 0.39428 1 16649 16649 2.0598 0 1 54700 7009 34249 34267 62945 62945 0.13330128221787163 WRRLGRMPH 9 Unmodified _WRRLGRMPH_ 0 0 0 MLT1C_dup15797|chr15:64121209-64121671:-|1.21862141259182|0.1489597718998293|3.03|151.0|15|3|sense MLT1C_dup15797|chr15:64121209-64121671:-|1.21862141259182|0.1489597718998293|3.03|151.0|15|3|sense MLT1C_dup15797|chr15:64121209-64121671:-|1.21862141259182|0.1489597718998293|3.03|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 604.8330078125 2 604.832726 1207.6509 NaN NaN NaN NaN NaN NaN NaN 119.52 1 122.93 122.43 123.43 3.4157 0 0 0 0.4029 1 29519 29519 0 0 1 54701 16301 34250 34268 62946 62946 0.05537933527580208 WRRLKKLK 8 Unmodified _WRRLKKLK_ 0 0 0 L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|26|1|sense L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|26|1|sense L1MA3_dup4243|chr7:139923452-139926971:-|3.0642642889853|0.1019797827512412|4.91|151.0|26|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 564.3796997070312 2 564.379835 1126.74512 0.45253 0.0002554 -0.92143 -0.00052004 -0.4689 -0.00026464 564.3790472481732 108.64 0.40265 108.64 108.5 108.9 0 63 41 3 0 0 0 0.82752 1 26566 26566 2.5775 0 1 4633400 54702 9547 34251 34269 62947 62947 0.18681395621342745 WRRLKTTHL 9 Unmodified _WRRLKTTHL_ 0 0 0 REV__Tigger19b_dup3371|chr20:36933129-36933454:-|1.1471181773868926|0.0616654653926667|4.22|151.0|6|2|sense REV__Tigger19b_dup3371|chr20:36933129-36933454:-|1.1471181773868926|0.0616654653926667|4.22|151.0|6|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 404.2437438964844 3 404.243763 1209.70946 -0.1191 -4.8147E-05 0.052525 2.1233E-05 -0.066579 -2.6914E-05 404.2436829612925 40.297 0.049122 43.801 43.785 43.834 3.5048 6 4 2 0 0 0 0.12463 1 7214 7214 2.2828 0 1 70273 + 54703 32619 34252 34270 62948 62948 0.11299313373683617 WRRPAAPL 8 Unmodified _WRRPAAPL_ 0 0 0 ENST00000177694.1_1_17:45810693-45811185:+|nuORF ENST00000177694.1_1_17:45810693-45811185:+|nuORF ENST00000177694.1_1_17:45810693-45811185:+|nuORF MSMS UPN47_class_I_Rep_3 4 483.7762451171875 2 483.785236 965.555919 NaN NaN NaN NaN NaN NaN NaN 24.969 1 28.32 27.82 28.82 3.3509 0 0 0 0.40798 1 3434 3434 0 0 1 54704 5853 34253 34271 62949 62949 0.07176323328019407 WRRRALTP 8 Unmodified _WRRRALTP_ 0 0 0 ENST00000290216.13_1_17:45918127-45918614:-|nuORF ENST00000290216.13_1_17:45918127-45918614:-|nuORF ENST00000290216.13_1_17:45918127-45918614:-|nuORF MSMS UPN47_class_I_Rep_3 4 528.3155517578125 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.855 1 93.252 92.752 93.752 3.3976 0 0 0 0.40746 1 22529 22529 0.69038 0 1 54705 6042 34254 34272 62950 62950 0.08970799622352388 WRRREREWVRK 11 Unmodified _WRRREREWVRK_ 0 0 0 L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 552.98095703125 3 552.981713 1655.92331 NaN NaN NaN NaN NaN NaN NaN 47.665 1 47.665 47.165 48.165 0 0 0 0 0.38417 1 9874 9874 0 0 1 54706 12217 34255 34273 62951 62951 0.12158413802421819 WRRREREWVRK 11 Unmodified _WRRREREWVRK_ 0 0 0 L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense L1ME1_dup13742|chr7:93329132-93330468:+|1.1808981152803928|0.1392898171636501|3.08|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 552.980712890625 3 552.981713 1655.92331 NaN NaN NaN NaN NaN NaN NaN 110.34 1 114.01 113.51 114.51 3.669 0 0 0 0.38417 1 26254 26254 0 0 1 54707 12217 34255 34273 62952 62952 0.12158413802421819 WRRRGLLVFA 10 Unmodified _WRRRGLLVFA_ 0 0 0 L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|200|2|anti-sense L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|200|2|anti-sense L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|200|2|anti-sense MSMS UPN47_class_I_Rep_2 3 637.3857421875 2 637.385648 1272.75674 NaN NaN NaN NaN NaN NaN NaN 102.68 1 106.2 105.7 106.7 3.5231 0 0 0 0.53105 1 24988 24988 0.45834 0 1 54708 13528 34256 34274 62953 62953 0.1312759264469605 WRRRPGPGA 9 Unmodified _WRRRPGPGA_ 0 0 0 REV__ENST00000265560.8_1_3:49377387-49377492:-|nuORF REV__ENST00000265560.8_1_3:49377387-49377492:-|nuORF MSMS UPN48_class_I_Rep_2 6 527.2660522460938 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 15.576 1 19.229 18.729 19.729 3.6535 0 0 0 0.4029 1 655 655 0 0 1 + 54709 21592 34257 34275 62954 62954 0.05505342445530914 WRRRPGPGA 9 Unmodified _WRRRPGPGA_ 0 0 0 REV__ENST00000265560.8_1_3:49377387-49377492:-|nuORF REV__ENST00000265560.8_1_3:49377387-49377492:-|nuORF MSMS UPN48_class_I_Rep_3 7 526.7645874023438 2 526.796666 1051.57878 NaN NaN NaN NaN NaN NaN NaN 15.732 1 19.272 18.772 19.772 3.5392 0 0 0 0.4029 1 660 660 0 0 1 + 54710 21592 34257 34275 62955 62955 0.05505342445530914 WRRRPQLL 8 Unmodified _WRRRPQLL_ 0 0 0 REV__ENST00000331238.6_1_17:1928400-1928577:-|nuORF REV__ENST00000331238.6_1_17:1928400-1928577:-|nuORF MSMS UPN48_class_I_Rep_3 7 562.8438110351562 2 562.843616 1123.67268 NaN NaN NaN NaN NaN NaN NaN 115.34 1 118.98 118.48 119.48 3.6433 0 0 0 0.40798 1 27439 27439 0 0 1 + 54711 21778 34258 34276 62956 62956 0.11579061547809033 WRRRRAKPS 9 Unmodified _WRRRRAKPS_ 0 0 0 ENSG00000108947|ENST00000226091|EFNB3 ENSG00000108947|ENST00000226091|EFNB3 ENSG00000108947|ENST00000226091|EFNB3 MULTI-SECPEP UPN46_class_I_Rep_3 1 606.3613891601562 2 606.862872 1211.71119 0.37343 0.00022662 -0.43575 -0.00026444 -0.062326 -3.7824E-05 606.8626223012121 31.198 0.096249 31.198 31.175 31.271 0 6 5 2 0 0 0 0.12532 1 5201 5201 0.52476 0 1 140130 54712 1883 34259 34277 62957 62957 0.11380367182300688 WRRRRHRHLA 10 Unmodified _WRRRRHRHLA_ 0 0 0 ENST00000589935.1_1_18:54318575-54318788:+|nuORF ENST00000589935.1_1_18:54318575-54318788:+|nuORF ENST00000589935.1_1_18:54318575-54318788:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 482.3471984863281 3 481.952088 1442.83443 0.27145 0.00013082 0.027569 1.3287E-05 0.29902 0.00014411 481.9521667146598 98.392 0.046669 98.392 98.365 98.411 0 7 5 2 0 0 0 0.56523 1 23950 23950 0.13989 0.017027 1 72300 54713 7605 34260 34278 62958 62958 0.1307304335346089 WRRRRPGRR 9 Unmodified _WRRRRPGRR_ 0 0 0 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1;ENSG00000110665|ENST00000381153|C11orf21 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 MULTI-MSMS UPN46_class_I_Rep_3 1 432.5974426269531 3 432.597534 1294.77077 0.13924 6.0234E-05 -0.22906 -9.9091E-05 -0.089823 -3.8857E-05 432.5973514966396 104.9 0.029579 104.9 104.89 104.92 0 6 2 3 0 0 0 0.50088 1 25599 25599 0.23584 0 1 232040 54714 576 34261 34279 62959 62959 0.13517682916335616 WRRRRPGRR 9 Unmodified _WRRRRPGRR_ 0 0 0 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1;ENSG00000110665|ENST00000381153|C11orf21 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 MULTI-MSMS UPN47_class_I_Rep_1 2 432.59747314453125 3 432.597534 1294.77077 0.13903 6.0142E-05 -0.18816 -8.1396E-05 -0.049131 -2.1254E-05 432.597381478287 100.2 0.90049 104 103.56 104.46 3.7942 351 120 4 0 0 0 0.48846 2 24747 24747;24803 0.96228 0 1 1757400 54715 576 34261 34279 62960;62961 62960 0.13517682916335616 WRRRRPGRR 9 Unmodified _WRRRRPGRR_ 0 0 0 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1;ENSG00000110665|ENST00000381153|C11orf21 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 MULTI-MSMS UPN48_class_I_Rep_2 6 432.93194580078125 3 432.597534 1294.77077 0.094242 4.0769E-05 0.084152 3.6404E-05 0.17839 7.7173E-05 432.59754615119 99.852 0.94398 103.61 103.21 104.16 3.7575 469 125 5 0 0 0 0.48846 3 23637 23637;23760;23791 0.96228 0 1 5894900 54716 576 34261 34279 62962;62963;62964 62962 0.13517682916335616 WRRRRPGRR 9 Unmodified _WRRRRPGRR_ 0 0 0 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1;ENSG00000110665|ENST00000381153|C11orf21 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 MULTI-MSMS UPN48_class_I_Rep_3 7 432.59747314453125 3 432.597534 1294.77077 0.13285 5.7472E-05 0.10188 4.4075E-05 0.23474 0.00010155 432.5975718179608 99.886 1.1505 103.74 103.32 104.47 3.8537 566 164 5 0 0 0 0.48846 3 23588 23588;23618;23727 0.96228 0.96228 1 6635000 54717 576 34261 34279 62965;62966;62967 62965 0.13517682916335616 WRRRRPGRR 9 Unmodified _WRRRRPGRR_ 0 0 0 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1;ENSG00000110665|ENST00000381153|C11orf21 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 chr11:2299707-2301756|130|11.92|0.27|5.48|-|1|C11orf21,C11orf21|1 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 432.597534 1294.77077 0.13918 6.021E-05 0.094638 4.094E-05 0.23382 0.00010115 432.5975636656133 103.93 0.26183 103.93 103.87 104.13 0 0.11003 7.4868E-05 NaN 0.96228 43 22 2 NaN NaN NaN NaN 0 NaN NaN 0 7589000 54718 576 34261 34279 0.13517682916335616 WRRRRRCS 8 Unmodified _WRRRRRCS_ 0 0 0 REV__ENST00000301457.2_1_19:8376468-8381506:-|nuORF REV__ENST00000301457.2_1_19:8376468-8381506:-|nuORF MSMS UPN46_class_I_Rep_3 1 588.3256225585938 2 588.325599 1174.63665 NaN NaN NaN NaN NaN NaN NaN 35.487 1 35.487 34.987 35.987 0 0 0 0 0.40798 1 6467 6467 0 0 1 + 54719 21673 34262 34280 62968 62968 0.05631281099294938 WRRRRRRRKRM 11 Unmodified _WRRRRRRRKRM_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 571.6842041015625 3 571.685348 1712.03421 -0.12644 -7.2285E-05 -1.6634 -0.00095094 -1.7898 -0.0010232 571.6843495516747 12.413 0.15101 12.413 12.349 12.5 0 29 17 2 0 0 0 0.68583 1 112 112 0 0 1 54867 + 54720 22607 34263 34281 62969 62969 0.2066777502950572 WRRRWRGRWLQ 11 Unmodified _WRRRWRGRWLQ_ 0 0 0 REV__ENST00000216410.7_1_14:53258232-53258316:-|nuORF REV__ENST00000216410.7_1_14:53258232-53258316:-|nuORF MSMS UPN46_class_I_Rep_3 1 552.2822875976562 3 552.646664 1654.91816 NaN NaN NaN NaN NaN NaN NaN 44.653 1 44.653 44.153 45.153 0 0 0 0 0.38417 1 9013 9013 0 0 1 + 54721 21474 34264 34282 62970 62970 0.11690154730490576 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 495.958984375 3 495.958908 1484.85489 0.30666 0.00015209 -0.27266 -0.00013523 0.033999 1.6862E-05 495.9586630620555 98.493 0.1571 98.493 98.426 98.583 0 24 17 3 0 0 0 0.68478 1 23980 23980 0.094841 0 1 331530 + 54722 17571 34265 34283 62971 62971 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2934265136719 3 495.958908 1484.85489 0.30675 0.00015214 -0.076592 -3.7987E-05 0.23016 0.00011415 495.95881185376084 99.233 0.20268 99.233 99.09 99.293 0 28 21 4 0 0 0 0.68478 1 24167 24167 0.094841 0 1 1136300 + 54723 17571 34265 34283 62972 62972 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 495.9588623046875 3 495.958908 1484.85489 0.30674 0.00015213 0.31012 0.00015381 0.61686 0.00030594 495.9587658054295 99.895 0.2324 99.895 99.766 99.999 0 50 25 3 0 0 0 0.68478 2 24326 24326;24363 0.094841 0 1 1264200 + 54724 17571 34265 34283 62973;62974 62973 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 495.9589538574219 3 495.958908 1484.85489 0.17401 8.6302E-05 0.46684 0.00023154 0.64085 0.00031784 495.9588768561042 95.982 1.034 99.594 99.146 100.18 3.6124 298 136 4 0 0 0 0.68478 3 23064 23064;23145;23240 0.094841 0.094841 1 756540 + 54725 17571 34265 34283 62975;62976;62977 62975 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MATCH UPN47_class_I_Rep_1 2 3 495.958908 1484.85489 0.27905 0.0001384 -0.40051 -0.00019863 -0.12145 -6.0235E-05 496.2931345642133 95.326 0.079506 99.091 99.057 99.136 3.7648 -0.15391 -0.00055253 NaN 0.094841 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 46480 + 54726 17571 34265 34283 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958908 1484.85489 0.44681 0.0002216 -1.0357 -0.00051367 -0.5889 -0.00029207 495.9582785591238 94.964 0.09938 98.436 98.365 98.465 3.472 -0.09071 -0.0010815 NaN 0.094841 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 50277 + 54727 17571 34265 34283 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 3 495.958908 1484.85489 0.44601 0.0002212 -0.10239 -5.0781E-05 0.34363 0.00017042 495.9587439351663 95.893 0.38699 99.369 99.097 99.484 3.4753 0.12385 -0.00010897 NaN 0.094841 111 55 3 NaN NaN NaN NaN 0 NaN NaN 0 177610 + 54728 17571 34265 34283 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 3 495.958908 1484.85489 0.28038 0.00013906 0.085661 4.2484E-05 0.36605 0.00018154 495.95883306507767 95.877 0.53282 99.287 98.909 99.442 3.4095 0.041862 0.00017083 NaN 0.094841 128 75 3 NaN NaN NaN NaN 0 NaN NaN 0 170790 + 54729 17571 34265 34283 0.13186169222603894 WRRTRRNRTLA 11 Unmodified _WRRTRRNRTLA_ 0 0 0 REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 3 495.958908 1484.85489 0.27867 0.00013821 -0.24738 -0.00012269 0.031291 1.5519E-05 495.9586073003474 94.875 0.22719 98.651 98.543 98.771 3.7761 0.12453 9.1461E-05 NaN 0.094841 35 31 2 NaN NaN NaN NaN 0 NaN NaN 0 132490 + 54730 17571 34265 34283 0.13186169222603894 WRRTVFQLKLI 11 Unmodified _WRRTVFQLKLI_ 0 0 0 REV__HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|61|2|sense REV__HERVIP10F-int_dup44|chr2:152702248-152708261:+|2.516280486944918|0.0819434848105393|4.94|151.0|61|2|sense MSMS UPN47_class_I_Rep_3 4 487.3025817871094 3 487.301389 1458.88234 NaN NaN NaN NaN NaN NaN NaN 110.59 1 114.12 113.62 114.62 3.529 0 0 0 0.38417 1 27137 27137 0.094841 0 1 + 54731 23762 34266 34284 62978 62978 0.17125259710269347 WRRWRKRWRRR 11 Unmodified _WRRWRKRWRRR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS UPN48_class_I_Rep_2 6 599.7963256835938 3 600.024358 1797.05124 NaN NaN NaN NaN NaN NaN NaN 72.43 1 75.995 75.495 76.495 3.5645 0 0 0 0.38417 1 16951 16951 0 0 1 + 54732 21558 34267 34285 62979 62979 0.1846001890696698 WRSFPKIGF 9 Unmodified _WRSFPKIGF_ 0 0 0 ENST00000373212.5_1_X:80553447-80553582:+|nuORF ENST00000373212.5_1_X:80553447-80553582:+|nuORF ENST00000373212.5_1_X:80553447-80553582:+|nuORF MSMS UPN47_class_I_Rep_1 2 569.7595825195312 2 569.313826 1136.6131 NaN NaN NaN NaN NaN NaN NaN 71.145 1 74.52 74.02 75.02 3.3751 0 0 0 0.39598 1 17329 17329 1.6526 0.32309 1 54733 6410 34268 34286 62980 62980 0.05025745813759386 WRSKRFKI 8 Unmodified _WRSKRFKI_ 0 0 0 L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|50|3|sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|50|3|sense L1MC_dup3009|chr6:119265672-119267297:+|1.9819487604455257|0.1367935881931639|3.86|150.0|50|3|sense MSMS UPN48_class_I_Rep_1 5 560.841064453125 2 560.840542 1119.66653 NaN NaN NaN NaN NaN NaN NaN 99.695 1 103.3 102.8 103.8 3.6065 0 0 0 0.40746 1 24064 24064 0.69038 0 1 54734 11055 34269 34287 62981 62981 0.11148543316267023 WRSPRHFW 8 Unmodified _WRSPRHFW_ 0 0 0 Charlie1a_dup4233|chr12:68618505-68618862:+|2.51218774926859|0.0625159625639423|5.33|151.0|11|3|sense Charlie1a_dup4233|chr12:68618505-68618862:+|2.51218774926859|0.0625159625639423|5.33|151.0|11|3|sense Charlie1a_dup4233|chr12:68618505-68618862:+|2.51218774926859|0.0625159625639423|5.33|151.0|11|3|sense MSMS UPN46_class_I_Rep_3 1 586.3001098632812 2 586.299042 1170.58353 NaN NaN NaN NaN NaN NaN NaN 72.296 1 72.296 71.796 72.796 0 0 0 0 0.40738 1 16704 16704 0.79363 0.19213 1 54735 472 34270 34288 62982 62982 0.005062265882770589 WRSQCPHL 8 Unmodified _WRSQCPHL_ 0 0 0 REV__ENSG00000140470|ENST00000268070|ADAMTS17 REV__ENSG00000140470|ENST00000268070|ADAMTS17 MSMS UPN46_class_I_Rep_3 1 513.7486572265625 2 513.750536 1025.48652 NaN NaN NaN NaN NaN NaN NaN 17.321 1 17.321 16.821 17.821 0 0 0 0 0.40738 1 1348 1348 0.79363 0 1 + 54736 19343 34271 34289 62983 62983 -0.02520503683035713 WRSQHMCF 8 Unmodified _WRSQHMCF_ 0 0 0 ENST00000361131.4_1_6:150570435-150570705:+|nuORF ENST00000361131.4_1_6:150570435-150570705:+|nuORF ENST00000361131.4_1_6:150570435-150570705:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 548.2388305664062 2 547.736571 1093.45859 0.026569 1.4553E-05 0.75717 0.00041473 0.78374 0.00042928 548.2383561049777 14.505 0.14959 17.892 17.79 17.939 3.3871 22 18 2 0 0 0 0.82752 1 587 587 0.79363 0 1 35825 54737 6324 34272 34290 62984 62984 -0.08440149934790497 WRSWFRRC 8 Unmodified _WRSWFRRC_ 0 0 0 REV__ENSG00000173714|ENST00000311378|WFIKKN2 REV__ENSG00000173714|ENST00000311378|WFIKKN2 MSMS UPN48_class_I_Rep_2 6 598.7994995117188 2 598.798352 1195.58215 NaN NaN NaN NaN NaN NaN NaN 38.854 1 42.584 42.084 43.084 3.7297 0 0 0 0.40746 1 6823 6823 0.69038 0 1 + 54738 20494 34273 34291 62985 62985 -0.00781730772132505 WRTCISYFG 9 Unmodified _WRTCISYFG_ 0 0 0 HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|45|3|sense HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|45|3|sense HERV9-int_dup12|chr1:74741115-74742798:-|1.7825975779954093|0.3967946626650717|2.17|150.0|45|3|sense MSMS UPN47_class_I_Rep_3 4 566.7666625976562 2 566.765852 1131.51715 NaN NaN NaN NaN NaN NaN NaN 75.057 1 78.303 77.803 78.803 3.2464 0 0 0 0.39428 1 18601 18601 2.0598 0 1 54739 8067 34274 34292 62986 62986 -0.04334770088644291 WRTFSSPS 8 Unmodified _WRTFSSPS_ 0 0 0 ENSG00000059145.19,UNKL,chr16,-,I12.1,1385386,1390631|26|4.75|2|intron ENSG00000059145.19,UNKL,chr16,-,I12.1,1385386,1390631|26|4.75|2|intron ENSG00000059145.19,UNKL,chr16,-,I12.1,1385386,1390631|26|4.75|2|intron MSMS UPN48_class_I_Rep_3 7 484.2359924316406 2 484.235242 966.45593 NaN NaN NaN NaN NaN NaN NaN 79.24 1 82.883 82.383 83.383 3.6423 0 0 0 0.40746 1 18781 18781 0.69038 0 1 54740 960 34275 34293 62987 62987 -0.028639587964335078 WRTKSKQIP 9 Unmodified _WRTKSKQIP_ 0 0 0 L1PA13_dup4515|chr9:5143959-5146332:-|2.252522966505171|0.0746144862134112|4.92|151.0|23|1|sense L1PA13_dup4515|chr9:5143959-5146332:-|2.252522966505171|0.0746144862134112|4.92|151.0|23|1|sense L1PA13_dup4515|chr9:5143959-5146332:-|2.252522966505171|0.0746144862134112|4.92|151.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 572.3361206054688 2 572.33529 1142.65603 NaN NaN NaN NaN NaN NaN NaN 60.426 1 63.9 63.4 64.4 3.4737 0 0 0 0.39518 1 13365 13365 1.8442 0 1 54741 13755 34276 34294 62988 62988 0.09040515871174648 WRTPPMKSCC 10 Unmodified _WRTPPMKSCC_ 0 0 0 REV__MLT1A0_dup2299|chr2:101415151-101415502:+|3.0108427136881497|0.1613909096117552|4.22|149.0|15|1|anti-sense REV__MLT1A0_dup2299|chr2:101415151-101415502:+|3.0108427136881497|0.1613909096117552|4.22|149.0|15|1|anti-sense MSMS UPN47_class_I_Rep_3 4 604.7742309570312 2 604.772296 1207.53004 NaN NaN NaN NaN NaN NaN NaN 22.456 1 25.806 25.306 26.306 3.3503 0 0 0 0.53105 1 2690 2690 1.1933 0.39971 1 + 54742 31596 34277 34295 62989 62989 -0.06542398292413054 WRTTAHAL 8 Unmodified _WRTTAHAL_ 0 0 0 ENSG00000166173|ENST00000299213|LARP6 ENSG00000166173|ENST00000299213|LARP6 ENSG00000166173|ENST00000299213|LARP6 MSMS UPN46_class_I_Rep_3 1 478.25689697265625 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 45.829 1 45.829 45.329 46.329 0 0 0 0 0.40604 1 9350 9350 2.5775 0 1 54743 4223 34278 34296 62990 62990 0.024477401944068333 WRVALLPH 8 Unmodified _WRVALLPH_ 0 0 0 ENST00000528273.5_1_17:43509052-43510583:-|nuORF ENST00000528273.5_1_17:43509052-43510583:-|nuORF ENST00000528273.5_1_17:43509052-43510583:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 496.2958984375 2 496.295436 990.57632 0.006293 3.1232E-06 0.11369 5.6423E-05 0.11998 5.9546E-05 496.2954407109461 28.206 0.26756 28.206 28.122 28.39 0 30 17 3 0 0 0 0.82752 1 4347 4347 0.69038 0 1 304200 54744 7277 34279 34297 62991 62991 0.08065493987851369 WRVGLGRKY 9 Unmodified _WRVGLGRKY_ 0 0 0 REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|211|2|anti-sense REV__HERV17-int_dup694|chr11:77858938-77862953:-|8.601560850637341|0.4665095344876659|4.2|151.0|211|2|anti-sense MSMS UPN47_class_I_Rep_2 3 567.831787109375 2 567.830175 1133.6458 NaN NaN NaN NaN NaN NaN NaN 84.83 1 88.254 87.754 88.754 3.4232 0 0 0 0.39518 1 21138 21138 1.8442 0 1 + 54745 23563 34280 34298 62992 62992 0.08431952936621201 WRVGTLSTI 9 Unmodified _WRVGTLSTI_ 0 0 0 REV__L1PA6_dup131|chr1:88712777-88718454:-|3.2195001097271034|0.0410077142970648|6.29|151.0|281|3|anti-sense REV__L1PA6_dup131|chr1:88712777-88718454:-|3.2195001097271034|0.0410077142970648|6.29|151.0|281|3|anti-sense MSMS UPN47_class_I_Rep_2 3 516.81494140625 2 516.795466 1031.57638 NaN NaN NaN NaN NaN NaN NaN 25.292 1 28.775 28.275 29.275 3.483 0 0 0 0.39428 1 3489 3489 2.0598 0 1 + 54746 29839 34281 34299 62993 62993 0.06185449197187154 WRVLFWGF 8 Unmodified _WRVLFWGF_ 0 0 0 nc|ENSG00000134769|Q9Y4J8-15|DTNA nc|ENSG00000134769|Q9Y4J8-15|DTNA nc|ENSG00000134769|Q9Y4J8-15|DTNA MSMS UPN48_class_I_Rep_1 5 555.7791137695312 2 555.797812 1109.58107 NaN NaN NaN NaN NaN NaN NaN 27.457 1 31.02 30.52 31.52 3.5629 0 0 0 0.40738 1 3539 3539 0.79363 0 1 54747 16689 34282 34300 62994 62994 0.030663781305975135 WRVLMELL 8 Unmodified _WRVLMELL_ 0 0 0 REV__ENST00000538503.5_1_12:121882954-121987523:-|nuORF REV__ENST00000538503.5_1_12:121882954-121987523:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 530.3046264648438 2 530.304613 1058.59467 0.43891 0.00023276 1.2007 0.00063676 1.6397 0.00086952 530.3049642955289 29.163 0.58634 32.794 32.532 33.119 3.6316 104 63 2 0 0 0 0.82752 1 4133 4133 3.9444 0 1 123190 + 54748 22904 34283 34301 62995 62995 0.06771867847533031 WRVRGALI 8 Unmodified _WRVRGALI_ 0 0 0 L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense;L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|229|1|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.8118896484375 2 485.800886 969.587219 0.046809 2.274E-05 -1.2005 -0.00058322 -1.1537 -0.00056048 485.80033284032754 51.999 0.31084 55.557 55.41 55.721 3.5585 34 24 2 0 0 0 0.82752 1 11558 11558 13.508 0.46542 1 74462 54749 14345 34284 34302 62996 62996 0.10120896362138865 WRVRGALI 8 Unmodified _WRVRGALI_ 0 0 0 L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense;L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|229|1|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 485.8116760253906 2 485.800886 969.587219 0.046809 2.274E-05 -1.2005 -0.00058322 -1.1537 -0.00056048 485.80033284032754 51.999 0.31084 55.557 55.41 55.721 3.5585 34 24 2 0 0 0 0.72333 1 11497 11497 13.508 13.508 1 74462 54750 14345 34284 34302 62997 62997 0.10120896362138865 WRVRGALI 8 Unmodified _WRVRGALI_ 0 0 0 L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense;L1PA4_dup3692|chr5:39034330-39040476:+|2.7343797368670715|0.1733531468605427|3.98|151.0|229|1|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense L1PA5_dup9999|chr15:76420625-76426457:-|3.6410740751182114|0.095812305956988|5.25|151.0|228|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 485.800886 969.587219 0.30949 0.00015035 -2.3939 -0.001163 -2.0844 -0.0010126 485.80004498301537 52.252 0.10379 55.585 55.55 55.654 3.3332 0.014122 -0.00094677 NaN 13.508 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 67186 54751 14345 34284 34302 0.10120896362138865 WRVVRPRS 8 Unmodified _WRVVRPRS_ 0 0 0 L1PA3_dup7472|chr10:32558678-32564814:+|1.0084737206068737|0.1655495086793867|2.61|151.0|36|2|sense L1PA3_dup7472|chr10:32558678-32564814:+|1.0084737206068737|0.1655495086793867|2.61|151.0|36|2|sense L1PA3_dup7472|chr10:32558678-32564814:+|1.0084737206068737|0.1655495086793867|2.61|151.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 528.31396484375 2 528.314692 1054.61483 NaN NaN NaN NaN NaN NaN NaN 89.172 1 92.796 92.296 93.296 3.6238 0 0 0 0.40746 1 21404 21404 0.69038 0 1 54752 14283 34285 34303 62998 62998 0.08970799622375125 WRWFFFAF 8 Unmodified _WRWFFFAF_ 0 0 0 REV__AluSz6_dup23339|chr9:90865294-90865608:-|1.0851440250480795|0.0433739291843033|4.64|151.0|21|2|anti-sense REV__AluSz6_dup23339|chr9:90865294-90865608:-|1.0851440250480795|0.0433739291843033|4.64|151.0|21|2|anti-sense MSMS UPN46_class_I_Rep_3 1 603.79931640625 2 603.797812 1205.58107 NaN NaN NaN NaN NaN NaN NaN 19.517 1 19.517 19.017 20.017 0 0 0 0 0.40746 1 1872 1872 0.69038 0 1 + 54753 17228 34286 34304 62999 62999 -0.013496218693944684 WRWGRRGG 8 Unmodified _WRWGRRGG_ 0 0 0 REV__ENSG00000106665.16,CLIP2,chr7,+,I4.1,74354005,74356409|52|8.8|1|intron REV__ENSG00000106665.16,CLIP2,chr7,+,I4.1,74354005,74356409|52|8.8|1|intron MSMS UPN46_class_I_Rep_3 1 515.2872924804688 2 515.775734 1029.53691 NaN NaN NaN NaN NaN NaN NaN 90.285 1 90.285 89.785 90.785 0 0 0 0 0.40798 1 21766 21766 0 0 1 + 54754 18335 34287 34305 63000 63000 0.02332786756983296 WRWLLLYQ 8 Unmodified _WRWLLLYQ_ 0 0 0 REV__L1PBa_dup74|chr1:159029981-159031725:-|1.4974506363669895|0.4428763395161298|1.76|151.0|61|1|anti-sense REV__L1PBa_dup74|chr1:159029981-159031725:-|1.4974506363669895|0.4428763395161298|1.76|151.0|61|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.3318481445312 2 589.329476 1176.6444 NaN NaN NaN NaN NaN NaN NaN 46.36 1 49.88 49.38 50.38 3.5192 0 0 0 0.40625 1 9042 9042 0.69038 0.088878 1 + 54755 30661 34288 34306 63001 63001 0.06314318847853428 WRYIYTYH 8 Unmodified _WRYIYTYH_ 0 0 0 MER21A_dup325|chr3:25724855-25725755:+|1.4627199695754245|0.4358351428435922|1.75|150.0|51|2|anti-sense MER21A_dup325|chr3:25724855-25725755:+|1.4627199695754245|0.4358351428435922|1.75|150.0|51|2|anti-sense MER21A_dup325|chr3:25724855-25725755:+|1.4627199695754245|0.4358351428435922|1.75|150.0|51|2|anti-sense MSMS UPN47_class_I_Rep_2 3 601.2922973632812 2 601.293091 1200.57163 NaN NaN NaN NaN NaN NaN NaN 61.616 1 64.876 64.376 65.376 3.2594 0 0 0 0.40746 1 14497 14497 0.69038 0 1 54756 15854 34289 34307 63002 63002 -0.020634349455804113 WRYLIDLY 8 Unmodified _WRYLIDLY_ 0 0 0 REV__L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|50|3|anti-sense REV__L1MB7_dup4230|chr3:57794462-57795257:-|1.0509220512475597|0.0109368433380858|6.59|151.0|50|3|anti-sense MSMS UPN48_class_I_Rep_3 7 571.3078002929688 2 571.305667 1140.59678 NaN NaN NaN NaN NaN NaN NaN 55.72 1 59.276 58.776 59.776 3.5554 0 0 0 0.40604 1 11839 11839 2.5775 0.27475 1 + 54757 26263 34290 34308 63003 63003 0.03210619856986341 WSADHHCM 8 Unmodified _WSADHHCM_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|236|2|anti-sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|236|2|anti-sense MSMS UPN46_class_I_Rep_3 1 493.2929992675781 2 493.684004 985.353456 NaN NaN NaN NaN NaN NaN NaN 53.659 1 53.659 53.159 54.159 0 0 0 0 0.40738 1 11562 11562 0.79363 0 1 + 54758 30223 34291 34309 63004 63004 -0.1398069113120073 WSADHHCM 8 Unmodified _WSADHHCM_ 0 0 0 REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|236|2|anti-sense REV__L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|236|2|anti-sense MSMS UPN46_class_I_Rep_3 1 493.68359375 2 493.684004 985.353456 NaN NaN NaN NaN NaN NaN NaN 62.306 1 62.306 61.806 62.806 0 0 0 0 0.40738 1 13924 13924 0.79363 0.10326 1 + 54759 30223 34291 34309 63005 63005 -0.1398069113120073 WSAEFNDF 8 Unmodified _WSAEFNDF_ 0 0 0 ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A MSMS UPN48_class_I_Rep_1 5 508.2107849121094 2 508.211432 1014.40831 NaN NaN NaN NaN NaN NaN NaN 92.834 1 96.458 95.958 96.958 3.624 0 0 0 0.40604 1 22307 22307 2.5775 0 1 54760 1418 34292 34310 63006 63006 -0.09831657787287895 WSAGIKVKV 9 Unmodified _WSAGIKVKV_ 0 0 0 REV__ENSG00000051341|ENST00000264233|POLQ REV__ENSG00000051341|ENST00000264233|POLQ MSMS UPN48_class_I_Rep_1 5 494.30096435546875 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 89.987 1 93.613 93.113 94.113 3.6255 0 0 0 0.39428 1 21626 21626 2.0598 0.21551 1 + 54761 17680 34293 34311 63007 63007 0.09746941065179726 WSAVDIRDR 9 Unmodified _WSAVDIRDR_ 0 0 0 ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 MSMS UPN47_class_I_Rep_1 2 559.2898559570312 2 559.291079 1116.56761 NaN NaN NaN NaN NaN NaN NaN 20.727 1 24.37 23.87 24.87 3.6436 0 0 0 0.39428 1 2133 2133 2.0598 0 1 54762 3879 34294 34312 63008 63008 0.013984755606998078 WSCWVIWQ 8 Unmodified _WSCWVIWQ_ 0 0 0 ENST00000436616.2_1_2:179295601-179298144:+|nuORF ENST00000436616.2_1_2:179295601-179298144:+|nuORF ENST00000436616.2_1_2:179295601-179298144:+|nuORF MSMS UPN47_class_I_Rep_2 3 554.1759643554688 2 554.257662 1106.50077 NaN NaN NaN NaN NaN NaN NaN 113.19 1 116.71 116.21 117.21 3.5171 0 0 0 0.40604 1 27521 27521 2.5775 0 1 54763 6757 34295 34313 63009 63009 -0.048218512547691716 WSEETPLHLF 10 Unmodified _WSEETPLHLF_ 0 0 0 REV__L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|178|3|anti-sense REV__L1MC1_dup4464|chr5:81681542-81684503:+|2.278810726867125|0.0157811048859293|7.17|151.0|178|3|anti-sense MSMS UPN48_class_I_Rep_3 7 629.810546875 2 629.808771 1257.60299 NaN NaN NaN NaN NaN NaN NaN 65.107 1 68.615 68.115 69.115 3.5077 0 0 0 0.53105 1 14688 14688 10.074 0 1 + 54764 26558 34296 34314 63010 63010 -0.015509067021412193 WSFFGHGAS 9 Unmodified _WSFFGHGAS_ 0 0 0 REV__HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|211|2|anti-sense REV__HERVL-int_dup2249|chr19:57195090-57199946:-|3.413071026175128|0.2442982552074774|3.8|151.0|211|2|anti-sense MSMS UPN47_class_I_Rep_1 2 498.22027587890625 2 498.222134 994.429715 NaN NaN NaN NaN NaN NaN NaN 29.608 1 33.366 32.866 33.866 3.7578 0 0 0 0.38639 1 4727 4727 3.9444 0.66309 1 + 54765 23881 34297 34315 63011 63011 -0.0677222796789465 WSFGILLTEL 10 Unmodified _WSFGILLTEL_ 0 0 0 ENSG00000000938|ENST00000374005|FGR;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENST00000491885.6_1_6:111982944-111997736:-|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-3|FYN ENSG00000000938|ENST00000374005|FGR MULTI-MSMS UPN47_class_I_Rep_1 2 589.8251953125 2 589.826432 1177.63831 0.4135 0.00024389 -3.2814 -0.0019355 -2.8679 -0.0016916 589.8245555944611 60.46 0.053032 63.841 63.825 63.878 3.3815 5 3 2 0 0 0 0.56078 1 14117 14117 3.2813 0 1 128180 54766 665;763 34298 34316 63012 63012 0.05659755825672619 WSFREKIK 8 Unmodified _WSFREKIK_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.3104858398438 2 547.311284 1092.60801 0.54388 0.00029767 -1.4102 -0.00077181 -0.8663 -0.00047413 547.3104251689662 109.22 0.21639 112.82 112.68 112.9 3.6046 36 22 2 0 0 0 0.82752 1 26921 26921 2.5775 0.27475 1 1037200 + 54767 23590 34299 34317 63013 63013 0.06541441951117122 WSFREKIK 8 Unmodified _WSFREKIK_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 547.311284 1092.60801 0.54388 0.00029767 -1.4102 -0.00077181 -0.8663 -0.00047413 547.3104251689662 109.22 0.21639 112.82 112.68 112.9 3.6046 0.023919 0.00021264 NaN 2.5775 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1037200 + 54768 23590 34299 34317 0.06541441951117122 WSFREKIK 8 Unmodified _WSFREKIK_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 547.311284 1092.60801 0.61097 0.00033439 -1.5402 -0.00084296 -0.92922 -0.00050857 547.3103753932652 109.23 0.15224 112.76 112.63 112.78 3.5307 -0.035597 7.0324E-05 NaN 2.5775 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1517400 + 54769 23590 34299 34317 0.06541441951117122 WSFREKIK 8 Unmodified _WSFREKIK_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 547.311284 1092.60801 0.49413 0.00027044 -2.0008 -0.001095 -1.5066 -0.00082459 547.3099996797343 109.11 0.060928 112.65 112.63 112.69 3.5347 -0.15057 -0.00043382 NaN 2.5775 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 647810 + 54770 23590 34299 34317 0.06541441951117122 WSFREKIK 8 Unmodified _WSFREKIK_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 547.311284 1092.60801 0.48723 0.00026667 -1.5772 -0.00086322 -1.09 -0.00059655 547.3103439764166 109.21 0.16808 112.88 112.76 112.93 3.6715 0.083228 2.9817E-05 NaN 2.5775 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1206900 + 54771 23590 34299 34317 0.06541441951117122 WSFREKIK 8 Unmodified _WSFREKIK_ 0 0 0 REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense REV__HERV35I-int_dup445|chr16:8823165-8825028:-|1.99677796680161|0.1322526384097602|3.92|151.0|4|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 547.311284 1092.60801 0.45436 0.00024868 -1.8099 -0.0009906 -1.3556 -0.00074192 547.3100728113559 109.2 0.11661 112.88 112.82 112.94 3.6751 0.079017 -0.00022495 NaN 2.5775 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 939740 + 54772 23590 34299 34317 0.06541441951117122 WSFSQYSS 8 Unmodified _WSFSQYSS_ 0 0 0 L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|101|1|anti-sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|101|1|anti-sense L1MA5_dup1679|chr6:63651662-63654283:-|1.9509228568352464|0.0627892653700062|4.96|151.0|101|1|anti-sense MSMS UPN46_class_I_Rep_3 1 495.95849609375 2 496.211432 990.408311 NaN NaN NaN NaN NaN NaN NaN 98.906 1 98.906 98.406 99.406 0 0 0 0 0.40604 1 24084 24084 2.5775 0 1 54773 9869 34300 34318 63014 63014 -0.08727657787278531 WSFTEQVF 8 Unmodified _WSFTEQVF_ 0 0 0 L1MD1_dup6575|chr21:45521264-45523061:+|2.6040447160431475|0.2094700257304265|3.64|151.0|93|2|anti-sense L1MD1_dup6575|chr21:45521264-45523061:+|2.6040447160431475|0.2094700257304265|3.64|151.0|93|2|anti-sense L1MD1_dup6575|chr21:45521264-45523061:+|2.6040447160431475|0.2094700257304265|3.64|151.0|93|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 522.7932739257812 2 522.245275 1042.476 0.10662 5.5681E-05 -0.98607 -0.00051497 -0.87946 -0.00045929 522.2448631683549 31.72 0.10961 31.72 31.688 31.798 0 7 5 2 0 0 0 0.72333 1 5342 5342 4.756 0 1 50856 54774 11976 34301 34319 63015 63015 -0.043542078564769326 WSGLQTNF 8 Unmodified _WSGLQTNF_ 0 0 0 REV__L1M4_dup13412|chr10:110944395-110945618:-|1.8631382272625097|0.0479847700603116|5.28|151.0|65|2|anti-sense REV__L1M4_dup13412|chr10:110944395-110945618:-|1.8631382272625097|0.0479847700603116|5.28|151.0|65|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 476.7305603027344 2 476.729792 951.445031 0.2224 0.00010602 0.424 0.00020213 0.64639 0.00030816 476.72994474114256 83.886 0.61088 87.567 87.227 87.838 3.6814 144 65 3 0 0 0 0.82752 1 20024 20024 2.5775 0 1 495680 + 54775 24365 34302 34320 63016 63016 -0.032633611707069576 WSGWTWRKF 9 Unmodified _WSGWTWRKF_ 0 0 0 ENST00000543131.5_1_11:114310293-114316716:+|nuORF ENST00000543131.5_1_11:114310293-114316716:+|nuORF ENST00000543131.5_1_11:114310293-114316716:+|nuORF MSMS UPN47_class_I_Rep_2 3 627.314208984375 2 627.314358 1252.61416 NaN NaN NaN NaN NaN NaN NaN 28.696 1 32.194 31.694 32.694 3.4986 0 0 0 0.4007 1 4489 4489 0.52476 0 1 54776 7362 34303 34321 63017 63017 -0.0020403981736762944 WSHLKCFQ 8 Unmodified _WSHLKCFQ_ 0 0 0 REV__Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|14|1|sense REV__Tigger3b_dup5023|chr13:51714745-51715904:-|2.5130675705993024|0.024968649141797|6.65|151.0|14|1|sense MSMS UPN47_class_I_Rep_1 2 524.7543334960938 2 524.755287 1047.49602 NaN NaN NaN NaN NaN NaN NaN 23.754 1 27.484 26.984 27.984 3.7298 0 0 0 0.40604 1 2991 2991 2.5775 0 1 + 54777 32753 34304 34322 63018 63018 -0.02582735397527358 WSHLLVAQL 9 Unmodified _WSHLLVAQL_ 0 0 0 REV__LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|1|1|sense REV__LTR8_dup1311|chr7:67226067-67226759:+|1.0741646435405516|0.0566137553610849|4.25|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 533.7872314453125 2 533.805834 1065.59712 NaN NaN NaN NaN NaN NaN NaN 50.967 1 54.492 53.992 54.992 3.5246 0 0 0 0.28335 1 10463 10463 11.64 1.4569 1 + 54778 31017 34305 34323 63019 63019 0.06694039576859723 WSIEISKTSI 10 Unmodified _WSIEISKTSI_ 0 0 0 REV__AluJb_dup88549|chr13:28193461-28193756:+|1.6378885642205516|0.0167780036526777|6.61|151.0|3|1|sense REV__AluJb_dup88549|chr13:28193461-28193756:+|1.6378885642205516|0.0167780036526777|6.61|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 582.3182373046875 2 582.318971 1162.62339 NaN NaN NaN NaN NaN NaN NaN 81.875 1 81.875 81.375 82.375 0 0 0 0 0.53105 1 19361 19361 1.1933 0.59184 1 + 54779 16973 34306 34324 63020 63020 0.048582639576807196 WSIKFGVH 8 Unmodified _WSIKFGVH_ 0 0 0 REV__ENSG00000140718.21,FTO,chr16,+,I16.1,53934110,53935571|41|6.45|4|intron REV__ENSG00000140718.21,FTO,chr16,+,I16.1,53934110,53935571|41|6.45|4|intron MSMS UPN48_class_I_Rep_1 5 487.2660217285156 2 487.266345 972.518136 NaN NaN NaN NaN NaN NaN NaN 71 1 74.466 73.966 74.966 3.466 0 0 0 0.40738 1 16573 16573 0.79363 0 1 + 54780 19354 34307 34325 63021 63021 0.03077812342564812 WSIRHKKR 8 Unmodified _WSIRHKKR_ 0 0 0 L1MB7_dup19625|chr17:10130197-10131031:+|1.460441389201058|0.0063362676854045|7.85|151.0|25|3|sense L1MB7_dup19625|chr17:10130197-10131031:+|1.460441389201058|0.0063362676854045|7.85|151.0|25|3|sense L1MB7_dup19625|chr17:10130197-10131031:+|1.460441389201058|0.0063362676854045|7.85|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 555.8359985351562 2 555.835791 1109.65703 NaN NaN NaN NaN NaN NaN NaN 13.001 1 16.456 15.956 16.956 3.4551 0 0 0 0.40746 1 214 214 0.69038 0 1 54781 10773 34308 34326 63022 63022 0.10658775030742618 WSIYLFWC 8 Unmodified _WSIYLFWC_ 0 0 0 L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|324|3|anti-sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|324|3|anti-sense L1PA6_dup2910|chr7:106918809-106924960:+|1.9237790846135288|0.0520449421512752|5.21|151.0|324|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.2630004882812 2 559.262413 1116.51027 NaN NaN NaN NaN NaN NaN NaN 21.223 1 24.573 24.073 25.073 3.3496 0 0 0 0.40738 1 2338 2338 0.79363 0 1 54782 14599 34309 34327 63023 63023 -0.043320829692220286 WSKAITLQ 8 Unmodified _WSKAITLQ_ 0 0 0 REV__L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|48|1|sense REV__L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|48|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 474.06365966796875 2 473.77146 945.528367 0.17901 8.481E-05 -1.5457 -0.00073229 -1.3667 -0.00064748 473.77110930326546 26.651 0.062668 30.214 30.166 30.228 3.5629 5 4 2 0 0 0 0.72333 1 3301 3301 0.6015 0 1 41325 + 54783 30427 34310 34328 63024 63024 0.05342375277132305 WSKDMAPY 8 Unmodified _WSKDMAPY_ 0 0 0 ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MSMS UPN47_class_I_Rep_1 2 499.2264099121094 2 499.226028 996.437503 NaN NaN NaN NaN NaN NaN NaN 19.547 1 23.159 22.659 23.659 3.6118 0 0 0 0.40581 1 1817 1817 2.8892 0 1 54784 3605 34311 34329 63025 63025 -0.06085836762656527 WSKRTELF 8 Unmodified _WSKRTELF_ 0 0 0 REV__ENST00000487231.5_1_17:26881240-26882135:-|nuORF REV__ENST00000487231.5_1_17:26881240-26882135:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 533.7882080078125 2 533.787641 1065.56073 0.34471 0.000184 -0.21907 -0.00011694 0.12564 6.7067E-05 533.7872551892694 51.031 1.0053 54.556 53.961 54.966 3.5246 126 65 3 0 0 0 0.82752 1 10605 10605 5.2307 2.3415 1 295870 + 54785 17973 34312 34330 63026 63026 0.030571626801247476 WSLHLPLLLF 10 Unmodified _WSLHLPLLLF_ 0 0 0 ENST00000370220.1_1_10:102759899-102760451:+|nuORF ENST00000370220.1_1_10:102759899-102760451:+|nuORF ENST00000370220.1_1_10:102759899-102760451:+|nuORF MSMS UPN48_class_I_Rep_2 6 619.8681030273438 2 619.868434 1237.72232 NaN NaN NaN NaN NaN NaN NaN 98.715 1 102.49 101.99 102.99 3.7707 0 0 0 0.53105 1 23448 23448 1.6526 0 1 54786 6381 34313 34331 63027 63027 0.11296331713219843 WSLLLLLC 8 Unmodified _WSLLLLLC_ 0 0 0 L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|172|3|anti-sense L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|172|3|anti-sense L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|172|3|anti-sense MSMS UPN47_class_I_Rep_3 4 481.2448425292969 2 480.782982 959.55141 NaN NaN NaN NaN NaN NaN NaN 28.702 1 32.036 31.536 32.536 3.3338 0 0 0 0.40738 1 4539 4539 0.79363 0 1 54787 13934 34314 34332 63028 63028 0.07001678070264461 WSLSVSSFAVG 11 Unmodified _WSLSVSSFAVG_ 0 0 0 ENSG00000163581|ENST00000314251|SLC2A2 ENSG00000163581|ENST00000314251|SLC2A2 ENSG00000163581|ENST00000314251|SLC2A2 MSMS UPN46_class_I_Rep_3 1 570.2741088867188 2 570.290214 1138.56587 NaN NaN NaN NaN NaN NaN NaN 37.137 1 37.137 36.637 37.637 0 0 0 0 0.38417 1 6952 6952 5.2969 0.96765 1 54788 4017 34315 34333 63029 63029 0.0021342175209611014 WSLVEVLIR 9 Unmodified _WSLVEVLIR_ 0 0 0 ENSG00000133302.13,SLF1,chr5,+,I17.1,94678956,94686572|28|5.58|2|intron;ENSG00000133302.13,SLF1,chr5,+,I17.1,94678956,94686572|28|5.58|1|intron;ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302.13,SLF1,chr5,+,I17.1,94678956,94686572|28|5.58|2|intron ENSG00000133302.13,SLF1,chr5,+,I17.1,94678956,94686572|28|5.58|2|intron MSMS UPN48_class_I_Rep_1 5 557.8328857421875 2 557.834591 1113.65463 NaN NaN NaN NaN NaN NaN NaN 52.209 1 55.732 55.232 56.232 3.5227 0 0 0 0.25702 1 10837 10837 13.042 0 1 54789 2798 34316 34334 63030 63030 0.1023488178241223 WSLVIYLKMI 10 Unmodified _WSLVIYLKMI_ 0 0 0 L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 422.5815734863281 3 422.582394 1264.72535 0.10544 4.4555E-05 -1.1522 -0.0004869 -1.0468 -0.00044235 422.91610804163093 104.25 0.06926 104.25 104.19 104.26 0 11 6 3 0 0 0 0.56486 1 25464 25464 0.13989 0 1 76584 54790 9109 34317 34335 63031 63031 0.1035783877571248 WSLVIYLKMI 10 Unmodified _WSLVIYLKMI_ 0 0 0 L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 3 422.582394 1264.72535 0.11118 4.6984E-05 -1.461 -0.00061741 -1.3499 -0.00057042 422.58156868653043 100.37 0.20615 104.16 104.09 104.3 3.7942 -0.011023 -0.00014432 NaN 0.13989 37 27 2 NaN NaN NaN NaN 0 NaN NaN 0 91697 54791 9109 34317 34335 0.1035783877571248 WSLVIYLKMI 10 Unmodified _WSLVIYLKMI_ 0 0 0 L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense L1M5_dup19630|chr6:37868693-37869153:-|1.1829297697112595|0.0123193634687727|6.59|151.0|6|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 422.582394 1264.72535 -0.34267 -0.00014481 -1.3949 -0.00058947 -1.7376 -0.00073428 422.5818935897447 100.61 0.026627 104.11 104.1 104.12 3.5063 -0.063643 -6.0509E-05 NaN 0.13989 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 42584 54792 9109 34317 34335 0.1035783877571248 WSMPIPLF 8 Unmodified _WSMPIPLF_ 0 0 0 REV__L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|96|1|anti-sense REV__L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|96|1|anti-sense MSMS UPN48_class_I_Rep_1 5 495.7610168457031 2 495.759507 989.50446 NaN NaN NaN NaN NaN NaN NaN 26.166 1 29.733 29.233 30.233 3.5667 0 0 0 0.40738 1 3170 3170 0.79363 0 1 + 54793 24865 34318 34336 63032 63032 0.009288185191167031 WSPQIPVV 8 Unmodified _WSPQIPVV_ 0 0 0 REV__L1P2_dup29|chr1:75754645-75755828:+|1.5508891067572863|0.0729880775099729|4.41|151.0|67|3|anti-sense REV__L1P2_dup29|chr1:75754645-75755828:+|1.5508891067572863|0.0729880775099729|4.41|151.0|67|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 463.3297424316406 2 463.260728 924.506903 0.17864 8.2759E-05 -0.67213 -0.00031137 -0.49349 -0.00022861 463.2602209376869 108.79 0.51289 112.32 112.17 112.68 3.5333 119 57 3 0 0 0 0.72333 1 26374 26374 5.7604 0 1 6212200 + 54794 28853 34319 34337 63033 63033 0.04162990248414644 WSPQIPVV 8 Unmodified _WSPQIPVV_ 0 0 0 REV__L1P2_dup29|chr1:75754645-75755828:+|1.5508891067572863|0.0729880775099729|4.41|151.0|67|3|anti-sense REV__L1P2_dup29|chr1:75754645-75755828:+|1.5508891067572863|0.0729880775099729|4.41|151.0|67|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 463.26025390625 2 463.260728 924.506903 0.054026 2.5028E-05 -0.50904 -0.00023582 -0.45502 -0.00021079 463.26020442374653 108.81 0.43485 112.44 112.29 112.72 3.6321 109 49 3 0 0 0 0.82752 1 26336 26336 5.7604 0 1 5959400 + 54795 28853 34319 34337 63034 63034 0.04162990248414644 WSPQIPVV 8 Unmodified _WSPQIPVV_ 0 0 0 REV__L1P2_dup29|chr1:75754645-75755828:+|1.5508891067572863|0.0729880775099729|4.41|151.0|67|3|anti-sense REV__L1P2_dup29|chr1:75754645-75755828:+|1.5508891067572863|0.0729880775099729|4.41|151.0|67|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 463.260728 924.506903 -0.035908 -1.6635E-05 -0.53301 -0.00024692 -0.56892 -0.00026356 463.26024621574516 108.8 0.33195 112.34 112.18 112.52 3.5382 -0.065383 6.8231E-05 NaN 5.7604 72 35 3 NaN NaN NaN NaN 0 NaN NaN 0 8485600 + 54796 28853 34319 34337 0.04162990248414644 WSPRPRRV 8 Unmodified _WSPRPRRV_ 0 0 0 REV__AluY_dup69278|chr12:11868955-11869255:+|1.0327561988424525|0.0353102662766326|4.87|151.0|6|2|sense REV__AluY_dup69278|chr12:11868955-11869255:+|1.0327561988424525|0.0353102662766326|4.87|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 527.053466796875 2 527.306867 1052.59918 NaN NaN NaN NaN NaN NaN NaN 102.45 1 102.45 101.95 102.95 0 0 0 0 0.40746 1 25002 25002 0.69038 0 1 + 54797 17237 34320 34338 63035 63035 0.07498513105315396 WSPSIVRNLS 10 Unmodified _WSPSIVRNLS_ 0 0 0 REV__L1MEd_dup7735|chr6:15525668-15526173:+|1.0217323662359272|0.1537054906222694|2.73|151.0|28|2|anti-sense REV__L1MEd_dup7735|chr6:15525668-15526173:+|1.0217323662359272|0.1537054906222694|2.73|151.0|28|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.8168334960938 2 579.81693 1157.61931 0.051589 2.9912E-05 -0.20296 -0.00011768 -0.15137 -8.7769E-05 579.8168103900558 43.692 0.66215 47.387 47.098 47.76 3.6951 65 39 2 0 0 0 0.56354 1 9106 9106 1.3295 0 1 86182 + 54798 28588 34321 34339 63036 63036 0.0468021925460107 WSPVESGTL 9 Unmodified _WSPVESGTL_ 0 0 0 REV__L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|58|1|anti-sense REV__L1M1_dup1801|chr3:142337963-142339653:+|1.3179888745002626|0.0934004635424605|3.82|151.0|58|1|anti-sense MSMS UPN47_class_I_Rep_3 4 488.2427062988281 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 77.748 1 81.03 80.53 81.53 3.2816 0 0 0 0.39518 1 19370 19370 1.8442 0 1 + 54799 24028 34322 34340 63037 63037 -0.01734511719087095 WSPWCRALPD 10 Unmodified _WSPWCRALPD_ 0 0 0 nc|ENSG00000185504|Q0VG06-2|FAAP100 nc|ENSG00000185504|Q0VG06-2|FAAP100 nc|ENSG00000185504|Q0VG06-2|FAAP100 MSMS UPN48_class_I_Rep_3 7 615.7902221679688 2 615.789858 1229.56516 NaN NaN NaN NaN NaN NaN NaN 36.265 1 39.932 39.432 40.432 3.6667 0 0 0 0.53105 1 5982 5982 1.4819 0 1 54800 16776 34323 34341 63038 63038 -0.04043696168605493 WSPWHYHW 8 Unmodified _WSPWHYHW_ 0 0 0 REV__ENSG00000184389|ENST00000442999|A3GALT2 REV__ENSG00000184389|ENST00000442999|A3GALT2 MSMS UPN48_class_I_Rep_2 6 599.764404296875 2 599.764501 1197.51445 NaN NaN NaN NaN NaN NaN NaN 13.842 1 17.496 16.996 17.996 3.6542 0 0 0 0.40798 1 333 333 0 0 1 + 54801 20820 34324 34342 63039 63039 -0.07640857431306358 WSRKPWAP 8 Unmodified _WSRKPWAP_ 0 0 0 REV__ENST00000459934.5_1_1:24122658-24127224:-|nuORF REV__ENST00000459934.5_1_1:24122658-24127224:-|nuORF MSMS UPN47_class_I_Rep_3 4 514.2777709960938 2 514.277244 1026.53993 NaN NaN NaN NaN NaN NaN NaN 75.832 1 79.089 78.589 79.589 3.2573 0 0 0 0.40738 1 18833 18833 0.79363 0 1 + 54802 22420 34325 34343 63040 63040 0.027726170911364534 WSRTVQKQG 9 Unmodified _WSRTVQKQG_ 0 0 0 nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 nc|ENSG00000141076|Q969X6-2|UTP4 MULTI-MSMS UPN46_class_I_Rep_3 1 545.292724609375 2 545.293622 1088.57269 0.089797 4.8966E-05 -0.077463 -4.224E-05 0.012334 6.7254E-06 545.2935949644965 28.634 0.5414 28.634 28.299 28.84 0 50 37 2 0 0 0 0.49026 1 4485 4485 1.6526 0 1 97057 54803 3205 34326 34344 63041 63041 0.031947794233246896 WSSIWHSV 8 Unmodified _WSSIWHSV_ 0 0 0 L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|46|1|anti-sense L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|46|1|anti-sense L1MEc_dup14928|chr14:45034184-45035159:+|1.6766145038664315|0.1034558399798852|4.02|151.0|46|1|anti-sense MSMS UPN47_class_I_Rep_1 2 500.7635498046875 2 501.245609 1000.47667 NaN NaN NaN NaN NaN NaN NaN 19.025 1 22.606 22.106 23.106 3.5806 0 0 0 0.40604 1 1687 1687 2.5775 0 1 54804 13029 34327 34345 63042 63042 -0.023553684167723077 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN46_class_I_Rep_3 1 493.2093505859375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 115.56 1 115.56 115.06 116.06 0 0 0 0 0.39428 1 28584 28584 2.0598 0 1 + 54805 17156 34328 34346 63043 63043 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.2093811035156 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 31.05 1 34.779 34.279 35.279 3.7293 0 0 0 0.39428 1 5157 5157 2.0598 0 1 + 54806 17156 34328 34346 63044 63044 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 492.7776794433594 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 31.205 1 34.934 34.434 35.434 3.7293 0 0 0 0.39428 1 5203 5203 2.0598 0 1 + 54807 17156 34328 34346 63045 63045 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.20880126953125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 115.78 1 119.37 118.87 119.87 3.5943 0 0 0 0.39428 1 28654 28654 2.0598 0 1 + 54808 17156 34328 34346 63046 63046 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.2098083496094 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.11 1 120.71 120.21 121.21 3.6036 0 0 0 0.39428 1 29022 29022 2.0598 0 1 + 54809 17156 34328 34346 63047 63047 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.209228515625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.76 1 121.37 120.87 121.87 3.6036 0 0 0 0.39428 1 29202 29202 2.0598 0 1 + 54810 17156 34328 34346 63048 63048 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.21026611328125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.89 1 121.5 121 122 3.6036 0 0 0 0.39428 1 29239 29239 2.0598 0 1 + 54811 17156 34328 34346 63049 63049 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.20947265625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 118.48 1 122.09 121.59 122.59 3.6036 0 0 0 0.39428 1 29404 29404 2.0598 0 1 + 54812 17156 34328 34346 63050 63050 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_1 2 493.20892333984375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.68 1 123.28 122.78 123.78 3.6036 0 0 0 0.39428 1 29747 29747 2.0598 0 1 + 54813 17156 34328 34346 63051 63051 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2091064453125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 26.057 1 29.551 29.051 30.051 3.4945 0 0 0 0.39428 1 3713 3713 2.0598 0 1 + 54814 17156 34328 34346 63052 63052 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2096862792969 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 27.93 1 31.429 30.929 31.929 3.4986 0 0 0 0.39428 1 4263 4263 2.0598 0 1 + 54815 17156 34328 34346 63053 63053 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2099914550781 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 30.423 1 33.905 33.405 34.405 3.4821 0 0 0 0.39428 1 5012 5012 2.0598 0 1 + 54816 17156 34328 34346 63054 63054 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.20892333984375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 33.263 1 36.703 36.203 37.203 3.4398 0 0 0 0.39428 1 5870 5870 2.0598 0 1 + 54817 17156 34328 34346 63055 63055 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 492.7691955566406 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 34.519 1 37.944 37.444 38.444 3.4253 0 0 0 0.39428 1 6254 6254 2.0598 0 1 + 54818 17156 34328 34346 63056 63056 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.244140625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 114.25 1 117.76 117.26 118.26 3.5109 0 0 0 0.39428 1 27816 27816 2.0598 0 1 + 54819 17156 34328 34346 63057 63057 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2099304199219 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 115.28 1 118.79 118.29 119.29 3.5039 0 0 0 0.39428 1 28104 28104 2.0598 0 1 + 54820 17156 34328 34346 63058 63058 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.20916748046875 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 116.49 1 119.98 119.48 120.48 3.4965 0 0 0 0.39428 1 28441 28441 2.0598 0 1 + 54821 17156 34328 34346 63059 63059 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.20928955078125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 116.67 1 120.16 119.66 120.66 3.4891 0 0 0 0.39428 1 28490 28490 2.0598 0 1 + 54822 17156 34328 34346 63060 63060 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2099609375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.56 1 121.05 120.55 121.55 3.4891 0 0 0 0.39428 1 28738 28738 2.0598 0 1 + 54823 17156 34328 34346 63061 63061 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2091369628906 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.86 1 121.34 120.84 121.84 3.4822 0 0 0 0.39428 1 28823 28823 2.0598 0 1 + 54824 17156 34328 34346 63062 63062 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2096252441406 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.98 1 121.46 120.96 121.96 3.4822 0 0 0 0.39428 1 28853 28853 2.0598 0 1 + 54825 17156 34328 34346 63063 63063 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.20904541015625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 118.18 1 121.66 121.16 122.16 3.4822 0 0 0 0.39428 1 28909 28909 2.0598 0 1 + 54826 17156 34328 34346 63064 63064 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2091979980469 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 118.33 1 121.81 121.31 122.31 3.4822 0 0 0 0.39428 1 28950 28950 2.0598 0 1 + 54827 17156 34328 34346 63065 63065 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2088623046875 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.06 1 122.54 122.04 123.04 3.4793 0 0 0 0.39428 1 29155 29155 2.0598 0 1 + 54828 17156 34328 34346 63066 63066 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2089538574219 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.79 1 123.27 122.77 123.77 3.4793 0 0 0 0.39428 1 29356 29356 2.0598 0 1 + 54829 17156 34328 34346 63067 63067 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_2 3 493.2090148925781 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.98 1 123.46 122.96 123.96 3.4793 0 0 0 0.39428 1 29410 29410 2.0598 0 1 + 54830 17156 34328 34346 63068 63068 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.20941162109375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 23.854 1 27.205 26.705 27.705 3.3509 0 0 0 0.39428 1 3105 3105 2.0598 0 1 + 54831 17156 34328 34346 63069 63069 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2090759277344 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 26.328 1 29.676 29.176 30.176 3.3478 0 0 0 0.39428 1 3834 3834 2.0598 0 1 + 54832 17156 34328 34346 63070 63070 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2098083496094 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 26.451 1 29.799 29.299 30.299 3.3478 0 0 0 0.39428 1 3870 3870 2.0598 0 1 + 54833 17156 34328 34346 63071 63071 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2091369628906 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 29.503 1 32.827 32.327 33.327 3.3235 0 0 0 0.39428 1 4779 4779 2.0598 0 1 + 54834 17156 34328 34346 63072 63072 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2095642089844 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 29.689 1 33.013 32.513 33.513 3.3235 0 0 0 0.39428 1 4832 4832 2.0598 0 1 + 54835 17156 34328 34346 63073 63073 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2076416015625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 30.695 1 34.006 33.506 34.506 3.3116 0 0 0 0.39428 1 5132 5132 2.0598 0 1 + 54836 17156 34328 34346 63074 63074 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2097473144531 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 38.877 1 42.115 41.615 42.615 3.238 0 0 0 0.39428 1 7618 7618 2.0598 0 1 + 54837 17156 34328 34346 63075 63075 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.28692626953125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 63.203 1 66.372 65.872 66.872 3.1698 0 0 0 0.39428 1 15038 15038 2.0598 0 1 + 54838 17156 34328 34346 63076 63076 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2093811035156 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.36 1 120.8 120.3 121.3 3.4425 0 0 0 0.39428 1 28910 28910 2.0598 0 1 + 54839 17156 34328 34346 63077 63077 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2093505859375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 118.14 1 121.57 121.07 122.07 3.4238 0 0 0 0.39428 1 29131 29131 2.0598 0 1 + 54840 17156 34328 34346 63078 63078 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN47_class_I_Rep_3 4 493.20880126953125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 118.9 1 122.31 121.81 122.81 3.4157 0 0 0 0.39428 1 29344 29344 2.0598 0 1 + 54841 17156 34328 34346 63079 63079 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.20947265625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 21.766 1 25.319 24.819 25.819 3.5533 0 0 0 0.39428 1 2036 2036 2.0598 0 1 + 54842 17156 34328 34346 63080 63080 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.2452392578125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 34.053 1 37.573 37.073 38.073 3.5201 0 0 0 0.39428 1 5397 5397 2.0598 0 1 + 54843 17156 34328 34346 63081 63081 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.31243896484375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 111.53 1 115.16 114.66 115.66 3.6326 0 0 0 0.39428 1 27056 27056 2.0598 0 1 + 54844 17156 34328 34346 63082 63082 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_1 5 493.2093811035156 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.96 1 121.58 121.08 122.08 3.6215 0 0 0 0.39428 1 28758 28758 2.0598 0 1 + 54845 17156 34328 34346 63083 63083 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.20928955078125 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 17.784 1 21.436 20.936 21.936 3.6518 0 0 0 0.39428 1 1092 1092 2.0598 0 1 + 54846 17156 34328 34346 63084 63084 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.27630615234375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 30.33 1 33.965 33.465 34.465 3.6351 0 0 0 0.39428 1 4423 4423 2.0598 0 1 + 54847 17156 34328 34346 63085 63085 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2088928222656 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 113.65 1 117.31 116.81 117.81 3.663 0 0 0 0.39428 1 27131 27131 2.0598 0 1 + 54848 17156 34328 34346 63086 63086 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2091979980469 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 114.4 1 118.06 117.56 118.56 3.6616 0 0 0 0.39428 1 27343 27343 2.0598 0 1 + 54849 17156 34328 34346 63087 63087 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2088623046875 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 116.14 1 119.81 119.31 120.31 3.6607 0 0 0 0.39428 1 27818 27818 2.0598 0 1 + 54850 17156 34328 34346 63088 63088 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2096252441406 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 117.93 1 121.59 121.09 122.09 3.6627 0 0 0 0.39428 1 28270 28270 2.0598 0 1 + 54851 17156 34328 34346 63089 63089 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.2095031738281 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.37 1 123.03 122.53 123.53 3.6652 0 0 0 0.39428 1 28647 28647 2.0598 0 1 + 54852 17156 34328 34346 63090 63090 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 493.20916748046875 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.58 1 123.24 122.74 123.74 3.6652 0 0 0 0.39428 1 28699 28699 2.0598 0 1 + 54853 17156 34328 34346 63091 63091 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.20941162109375 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 23.007 1 26.758 26.258 27.258 3.7507 0 0 0 0.39428 1 2442 2442 2.0598 0 1 + 54854 17156 34328 34346 63092 63092 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.2102966308594 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 28.028 1 31.77 31.27 32.27 3.7424 0 0 0 0.39428 1 3758 3758 2.0598 0 1 + 54855 17156 34328 34346 63093 63093 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.20965576171875 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 29.047 1 32.776 32.276 33.276 3.7286 0 0 0 0.39428 1 4029 4029 2.0598 0 1 + 54856 17156 34328 34346 63094 63094 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.2085876464844 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 37.305 1 40.968 40.468 41.468 3.663 0 0 0 0.39428 1 6274 6274 2.0598 0 1 + 54857 17156 34328 34346 63095 63095 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.2086181640625 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 115.75 1 119.39 118.89 119.89 3.6433 0 0 0 0.39428 1 27548 27548 2.0598 0 1 + 54858 17156 34328 34346 63096 63096 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.2091979980469 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.54 1 123.11 122.61 123.61 3.566 0 0 0 0.39428 1 28408 28408 2.0598 0 1 + 54859 17156 34328 34346 63097 63097 -0.08833786877005423 WSSLLSCCS 9 Unmodified _WSSLLSCCS_ 0 0 0 REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense REV__AluSx_dup85620|chr14:102597335-102597628:-|1.0509220512475597|0.005103941214965|7.69|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_3 7 493.2092590332031 2 493.209521 984.404488 NaN NaN NaN NaN NaN NaN NaN 119.74 1 123.3 122.8 123.8 3.566 0 0 0 0.39428 1 28457 28457 2.0598 0 1 + 54860 17156 34328 34346 63098 63098 -0.08833786877005423 WSSLTPVEGLD 11 Unmodified _WSSLTPVEGLD_ 0 0 0 REV__ENST00000491066.1_1_X:153697015-153697611:+|nuORF REV__ENST00000491066.1_1_X:153697015-153697611:+|nuORF MSMS UPN48_class_I_Rep_3 7 602.2973022460938 2 602.298236 1202.58192 NaN NaN NaN NaN NaN NaN NaN 40.293 1 43.944 43.444 44.444 3.6509 0 0 0 0.38417 1 7147 7147 1.1933 0 1 + 54861 22627 34329 34347 63099 63099 -0.011269168016497133 WSSVQDYKC 9 Unmodified _WSSVQDYKC_ 0 0 0 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 MSMS UPN46_class_I_Rep_3 1 558.2442626953125 2 558.244949 1114.47534 NaN NaN NaN NaN NaN NaN NaN 15.353 1 15.353 14.853 15.853 0 0 0 0 0.39518 1 858 858 1.8442 0.51471 1 54862 4356 34330 34348 63100 63100 -0.07731370567830709 WSTLLLIHI 9 Unmodified _WSTLLLIHI_ 0 0 0 REV__L1MA3_dup6832|chr12:69377561-69379420:-|1.4153979491591415|0.0635032493586781|4.48|151.0|38|2|sense REV__L1MA3_dup6832|chr12:69377561-69379420:-|1.4153979491591415|0.0635032493586781|4.48|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 548.3319091796875 2 548.331685 1094.64882 0.49747 0.00027278 0.23894 0.00013102 0.73642 0.0004038 548.3317675988661 72.944 0.41732 76.417 76.154 76.571 3.4732 42 30 2 0 0 0 0.30667 1 17184 17184 13.508 4.1604 1 132210 + 54863 25100 34331 34349 63101 63101 0.10527783270754298 WSVHIVPY 8 Unmodified _WSVHIVPY_ 0 0 0 L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7660217285156 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 33.88 1 37.155 36.655 37.655 3.2748 0 0 0 0.40364 1 6094 6094 5.7604 0 1 54864 14501 34332 34350 63102 63102 0.018023926227101583 WSVHIVPY 8 Unmodified _WSVHIVPY_ 0 0 0 L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7652893066406 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 112.42 1 115.93 115.43 116.43 3.5098 0 0 0 0.40604 1 27599 27599 2.5775 0 1 54865 14501 34332 34350 63103 63103 0.018023926227101583 WSVHIVPY 8 Unmodified _WSVHIVPY_ 0 0 0 L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense L1PA5_dup6006|chr8:140382164-140388390:+|1.1500743987163875|0.040168648186737|4.84|151.0|306|2|anti-sense MSMS UPN48_class_I_Rep_1 5 500.76629638671875 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 33.006 1 36.532 36.032 37.032 3.5266 0 0 0 0.40738 1 5093 5093 0.79363 0 1 54866 14501 34332 34350 63104 63104 0.018023926227101583 WSVTIIKT 8 Unmodified _WSVTIIKT_ 0 0 0 L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|161|3|anti-sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|161|3|anti-sense L1MB4_dup1505|chr3:45724335-45726869:-|3.2895869286803303|0.207384006688559|3.99|150.0|161|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 474.28240966796875 2 474.28166 946.548768 0.25105 0.00011907 0.78689 0.00037321 1.0379 0.00049228 474.2822419609703 116.27 0.065201 116.27 116.23 116.3 0 7 4 2 0 0 0 0.82752 1 28779 28779 0.69038 0 1 520800 54867 10477 34333 34351 63105 63105 0.07335545936962262 WSWLLFFL 8 Unmodified _WSWLLFFL_ 0 0 0 REV__L1PA16_dup8771|chrX:110074178-110078510:-|3.3407185047048777|0.0231534923256516|7.17|151.0|264|3|anti-sense REV__L1PA16_dup8771|chrX:110074178-110078510:-|3.3407185047048777|0.0231534923256516|7.17|151.0|264|3|anti-sense MSMS UPN48_class_I_Rep_3 7 556.3028564453125 2 556.302396 1110.59024 NaN NaN NaN NaN NaN NaN NaN 65.262 1 68.77 68.27 69.27 3.5077 0 0 0 0.40738 1 14734 14734 0.79363 0 1 + 54868 29424 34334 34352 63106 63106 0.03936726696269943 WSWTFCCCC 9 Unmodified _WSWTFCCCC_ 0 0 0 L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|138|2|anti-sense L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|138|2|anti-sense L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|138|2|anti-sense MSMS UPN48_class_I_Rep_1 5 569.6840209960938 2 569.684301 1137.35405 NaN NaN NaN NaN NaN NaN NaN 26.161 1 29.728 29.228 30.228 3.5667 0 0 0 0.4007 1 3168 3168 0.52476 0.066424 1 54869 15270 34335 34353 63107 63107 -0.20913355798006705 WSWTFCCCCC 10 Unmodified _WSWTFCCCCC_ 0 0 0 L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|138|2|anti-sense L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|138|2|anti-sense L1PB3_dup2458|chr10:76364730-76367414:-|2.178737758477973|0.0237858164068524|6.52|150.0|138|2|anti-sense MSMS UPN47_class_I_Rep_3 4 621.18896484375 2 621.188893 1240.36323 NaN NaN NaN NaN NaN NaN NaN 116.44 1 119.91 119.41 120.41 3.462 0 0 0 0.53105 1 28655 28655 0 0 1 54870 15270 34336 34354 63108 63108 -0.24733330503977413 WSWVVFFF 8 Unmodified _WSWVVFFF_ 0 0 0 L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|220|1|anti-sense L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|220|1|anti-sense L1PA7_dup3828|chr4:173078840-173084938:-|1.8646567345259537|0.0554452158625782|5.07|151.0|220|1|anti-sense MSMS UPN48_class_I_Rep_3 7 559.279296875 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 32.762 1 36.452 35.952 36.952 3.6896 0 0 0 0.40738 1 5016 5016 0.79363 0 1 54871 14815 34337 34355 63109 63109 -0.010321328548570818 WTAFLWLG 8 Unmodified _WTAFLWLG_ 0 0 0 nc|ENSG00000164270|Q13639-7|HTR4;nc|ENSG00000164270|Q13639-3|HTR4;nc|ENSG00000164270|Q13639-5|HTR4;nc|ENSG00000164270|Q13639-4|HTR4;nc|ENSG00000164270|Q13639-2|HTR4;ENSG00000164270|ENST00000377888|HTR4;nc|ENSG00000164270|Q13639-6|HTR4;nc|ENSG00000164270|Q13639-9|HTR4;nc|ENSG00000164270|Q13639-8|HTR4 nc|ENSG00000164270|Q13639-7|HTR4 nc|ENSG00000164270|Q13639-7|HTR4 MSMS UPN47_class_I_Rep_3 4 497.2633056640625 2 497.263271 992.511988 NaN NaN NaN NaN NaN NaN NaN 41.731 1 44.968 44.468 45.468 3.2372 0 0 0 0.40738 1 8492 8492 0.79363 0 1 54872 4098 34338 34356 63110 63110 0.01543294111047544 WTDINVVVY 9 Unmodified _WTDINVVVY_ 0 0 0 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 554.787353515625 2 554.787307 1107.56006 0.40455 0.00022444 0.077285 4.2877E-05 0.48183 0.00026731 554.7872683660881 74.168 0.30575 77.562 77.399 77.705 3.3937 51 28 2 0 0 0 0.097406 1 18226 18226 34.402 17.459 1 100580 54873 543 34339 34357 63111 63111 0.010583232404542287 WTDINVVVY 9 Unmodified _WTDINVVVY_ 0 0 0 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 555.288818359375 2 554.787307 1107.56006 0.44651 0.00024772 -0.34325 -0.00019043 0.10326 5.7285E-05 554.7871212645986 74.285 0.54807 77.59 77.326 77.874 3.3048 87 56 2 0 0 0 0.21527 1 18300 18300 19.257 2.3147 1 103250 54874 543 34339 34357 63112 63112 0.010583232404542287 WTDINVVVY 9 Unmodified _WTDINVVVY_ 0 0 0 CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant CHD9|p.T2496Sfs*7|1|0.13|ENSG00000177200|chr16:53314946-53314947|-/G|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 554.7869262695312 2 554.787307 1107.56006 0.4542 0.00025198 -0.32659 -0.00018119 0.12761 7.0794E-05 554.7869212810731 74.355 0.50154 77.591 77.309 77.811 3.2363 79 53 2 0 0 0 0.21527 2 18354 18354;18395 19.257 2.3147 1 94286 54875 543 34339 34357 63113;63114 63113 0.010583232404542287 WTDVPLYVI 9 Unmodified _WTDVPLYVI_ 0 0 0 REV__L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|55|3|anti-sense REV__L1ME2_dup7098|chr9:124716937-124717723:+|1.116777237513688|0.1153087403514328|3.28|151.0|55|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 553.2994384765625 2 553.30005 1104.58555 0.40113 0.00022195 0.21881 0.00012107 0.61994 0.00034301 553.3001192465805 88.575 0.33948 92.385 92.127 92.467 3.8104 65 41 2 0 0 0 0.50015 1 20970 20970 0.6015 0 1 155680 + 54876 27882 34340 34358 63115 63115 0.037437977628542285 WTEDDDFH 8 Unmodified _WTEDDDFH_ 0 0 0 REV__ENSG00000137745|ENST00000260302|MMP13 REV__ENSG00000137745|ENST00000260302|MMP13 MULTI-MSMS UPN46_class_I_Rep_3 1 532.7022705078125 2 532.701429 1063.3883 0.33804 0.00018007 -0.81435 -0.0004338 -0.47631 -0.00025373 532.7023531313772 103.91 0.27605 103.91 103.78 104.05 0 32 23 2 0 0 0 0.82752 1 25358 25358 2.5775 0 1 146610 + 54877 19241 34341 34359 63116 63116 -0.14085453517895985 WTEDDDFH 8 Unmodified _WTEDDDFH_ 0 0 0 REV__ENSG00000137745|ENST00000260302|MMP13 REV__ENSG00000137745|ENST00000260302|MMP13 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 532.701429 1063.3883 0.47795 0.00025461 -0.1247 -6.6425E-05 0.35326 0.00018818 532.702386905529 99.84 0.079781 103.63 103.58 103.66 3.7942 -0.13624 0.00049181 NaN 2.5775 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 80248 + 54878 19241 34341 34359 -0.14085453517895985 WTEVIYLA 8 Unmodified _WTEVIYLA_ 0 0 0 ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232 ENST00000515518.6_1_5:109760554-109978041:-|nuORF ENST00000515518.6_1_5:109760554-109978041:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.7652282714844 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 23.311 1 26.871 26.371 27.371 3.5605 0 0 0 0.40738 1 2412 2412 0.79363 0 1 54879 5177 34342 34360 63117 63117 0.020115531829901556 WTGDTGGK 8 Unmodified _WTGDTGGK_ 0 0 0 REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 411.2109680175781 2 411.193042 820.371532 0.094827 3.8992E-05 0.50138 0.00020616 0.5962 0.00024515 411.1931881763535 109.23 0.37208 112.83 112.68 113.05 3.6046 92 41 3 0 0 0 0.72333 1 26918 26918 2.5775 0 1 3011100 + 54880 29490 34343 34361 63118 63118 -0.04583909613165815 WTGDTGGK 8 Unmodified _WTGDTGGK_ 0 0 0 REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 411.193042 820.371532 -0.41217 -0.00016948 0.71817 0.00029531 0.306 0.00012583 411.1932954047127 109.23 0.34705 112.76 112.63 112.97 3.5307 -0.038369 4.0105E-05 NaN 2.5775 92 44 3 NaN NaN NaN NaN 0 NaN NaN 0 4087300 + 54881 29490 34343 34361 -0.04583909613165815 WTGDTGGK 8 Unmodified _WTGDTGGK_ 0 0 0 REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense REV__L1PA2_dup3589|chr11:108260627-108266643:+|2.0920458325400992|0.2236133040519715|3.23|151.0|63|2|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 411.193042 820.371532 -0.61081 -0.00025116 0.77998 0.00032072 0.16917 6.9559E-05 411.19334007198313 109.23 0.3926 112.76 112.6 113 3.5347 -0.039133 9.0932E-05 NaN 2.5775 87 51 2 NaN NaN NaN NaN 0 NaN NaN 0 3945000 + 54882 29490 34343 34361 -0.04583909613165815 WTGPPVDL 8 Unmodified _WTGPPVDL_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MSMS UPN46_class_I_Rep_3 1 442.7294006347656 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 103.7 1 103.7 103.2 104.2 0 0 0 0 0.40364 1 25301 25301 5.7604 0 1 54883 803 34344 34362 63119 63119 -0.002415755396327768 WTHARHLA 8 Unmodified _WTHARHLA_ 0 0 0 ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22 ENSG00000124422|ENST00000261497|USP22 ENSG00000124422|ENST00000261497|USP22 MSMS UPN48_class_I_Rep_1 5 496.2384033203125 2 496.264668 990.514782 NaN NaN NaN NaN NaN NaN NaN 22.313 1 25.866 25.366 26.366 3.5533 0 0 0 0.40746 1 2162 2162 0.69038 0 1 54884 2465 34345 34363 63120 63120 0.01914562288561683 WTHLSAHFI 9 Unmodified _WTHLSAHFI_ 0 0 0 REV__L1MEc_dup9256|chr8:73723365-73724036:-|1.2694274910017658|0.0112147445622801|6.82|151.0|47|2|anti-sense REV__L1MEc_dup9256|chr8:73723365-73724036:-|1.2694274910017658|0.0112147445622801|6.82|151.0|47|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2877807617188 2 556.287808 1110.56106 0.42247 0.00023501 1.1573 0.00064378 1.5797 0.00087879 556.288064006567 63.242 0.54201 66.498 66.191 66.733 3.2558 50 38 2 0 0 0 0.46434 1 15046 15046 4.3292 0 1 79922 + 54885 28496 34346 34364 63121 63121 0.010205823999967834 WTIIQLMYI 9 Unmodified _WTIIQLMYI_ 0 0 0 REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|93|3|sense REV__L1PA14_dup347|chr2:121546323-121549723:+|2.2060353456839814|0.0351082157902972|5.97|151.0|93|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 590.8251342773438 2 590.825378 1179.6362 0.048432 2.8615E-05 -0.2225 -0.00013146 -0.17407 -0.00010285 590.8253232003696 13.188 0.13309 16.576 16.495 16.629 3.388 21 11 2 0 0 0 0.48643 1 258 258 2.0598 0 1 34994 + 54886 29169 34347 34365 63122 63122 0.05357003816197903 WTIIRVKH 8 Unmodified _WTIIRVKH_ 0 0 0 REV__L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|35|2|anti-sense REV__L1MEc_dup16565|chr17:39293523-39294028:-|2.04656511370682|0.0366893656035567|5.8|151.0|35|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.8220825195312 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 31.723 1 31.723 31.223 32.223 0 0 0 0 0.40604 1 5338 5338 2.5775 0 1 + 54887 28402 34348 34366 63123 63123 0.10533452050663072 WTIMAVMV 8 Unmodified _WTIMAVMV_ 0 0 0 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MULTI-MSMS UPN46_class_I_Rep_3 1 475.7454833984375 2 475.745542 949.476531 0.255 0.00012132 -0.81212 -0.00038636 -0.55712 -0.00026505 475.74500484936954 103.95 0.58067 103.95 103.68 104.26 0 87 53 2 0 0 0 0.82752 2 25348 25348;25376 5.7604 0 1 447740 54888 849 34349 34367 63124;63125 63124 -0.00022827732630048558 WTIMAVMV 8 Unmodified _WTIMAVMV_ 0 0 0 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MSMS UPN46_class_I_Rep_3 1 475.7453308105469 2 475.745542 949.476531 NaN NaN NaN NaN NaN NaN NaN 104.2 1 104.2 103.7 104.7 0 0 0 0 0.40364 1 25448 25448 5.7604 0 1 54889 849 34349 34367 63126 63126 -0.00022827732630048558 WTIMAVMV 8 Unmodified _WTIMAVMV_ 0 0 0 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MULTI-SECPEP UPN48_class_I_Rep_3 7 475.2201232910156 2 475.745542 949.476531 0.21358 0.00010161 -0.17321 -8.2403E-05 0.040369 1.9206E-05 475.744991681585 99.631 0.14622 103.51 103.46 103.61 3.8839 33 19 2 0 0 0 0.72333 1 23611 23611 5.7604 0 1 214630 54890 849 34349 34367 63127 63127 -0.00022827732630048558 WTIMAVMV 8 Unmodified _WTIMAVMV_ 0 0 0 ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC ENSG00000036473|ENST00000039007|OTC MULTI-MATCH UPN47_class_I_Rep_1 2 2 475.745542 949.476531 0.23579 0.00011218 -0.73641 -0.00035035 -0.50062 -0.00023817 475.74497536056214 99.835 0.13785 103.63 103.56 103.69 3.7942 -0.068646 2.0422E-05 NaN 5.7604 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 290430 54891 849 34349 34367 -0.00022827732630048558 WTKSHMHA 8 Unmodified _WTKSHMHA_ 0 0 0 nc|ENSG00000152582|Q9C093-4|SPEF2 nc|ENSG00000152582|Q9C093-4|SPEF2 nc|ENSG00000152582|Q9C093-4|SPEF2 MSMS UPN47_class_I_Rep_3 4 499.22698974609375 2 499.237261 996.45997 NaN NaN NaN NaN NaN NaN NaN 19.804 1 23.155 22.655 23.655 3.3514 0 0 0 0.40738 1 1921 1921 0.79363 0 1 54892 16713 34350 34368 63128 63128 -0.038401925743642096 WTLALFCWIS 10 Unmodified _WTLALFCWIS_ 0 0 0 nc|ENSG00000177076|Q5QJU3-2|ACER2;ENSG00000177076|ENST00000340967|ACER2 nc|ENSG00000177076|Q5QJU3-2|ACER2 nc|ENSG00000177076|Q5QJU3-2|ACER2 MSMS UPN47_class_I_Rep_3 4 620.31591796875 2 620.315177 1238.6158 NaN NaN NaN NaN NaN NaN NaN 48.139 1 51.379 50.879 51.879 3.2405 0 0 0 0.53105 1 10439 10439 1.4819 0 1 54893 4780 34351 34369 63129 63129 0.006038331564013788 WTLARRMR 8 Unmodified _WTLARRMR_ 0 0 0 REV__ENST00000254718.8_1_17:4458633-4458699:-|nuORF REV__ENST00000254718.8_1_17:4458633-4458699:-|nuORF MSMS UPN48_class_I_Rep_1 5 545.2824096679688 2 545.308552 1088.60255 NaN NaN NaN NaN NaN NaN NaN 40.521 1 44.026 43.526 44.526 3.5048 0 0 0 0.40625 1 7282 7282 2.3027 0.4585 1 + 54894 21531 34352 34370 63130 63130 0.0617943988766001 WTLETQGKR 9 Unmodified _WTLETQGKR_ 0 0 0 L1PB1_dup10019|chr12:42427320-42428774:+|1.7573184993336832|0.156312935490971|3.49|151.0|31|2|sense L1PB1_dup10019|chr12:42427320-42428774:+|1.7573184993336832|0.156312935490971|3.49|151.0|31|2|sense L1PB1_dup10019|chr12:42427320-42428774:+|1.7573184993336832|0.156312935490971|3.49|151.0|31|2|sense MSMS UPN48_class_I_Rep_2 6 559.803466796875 2 559.80128 1117.58801 NaN NaN NaN NaN NaN NaN NaN 27.907 1 31.538 31.038 32.038 3.6311 0 0 0 0.39598 1 3769 3769 1.6526 0.96225 1 54895 14991 34353 34371 63131 63131 0.033916462205070275 WTLKSISL 8 Unmodified _WTLKSISL_ 0 0 0 REV__MLT1F2_dup4892|chr15:49827897-49828316:+|1.565499013880989|0.0307934976341794|5.67|149.0|18|2|anti-sense REV__MLT1F2_dup4892|chr15:49827897-49828316:+|1.565499013880989|0.0307934976341794|5.67|149.0|18|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 474.0634460449219 2 474.28166 946.548768 -0.20605 -9.7727E-05 0.91523 0.00043408 0.70918 0.00033635 474.2819730247598 21.134 0.026785 21.134 21.111 21.138 0 4 2 2 0 0 0 0.72333 1 2312 2312 2.3027 0 1 37689 + 54896 31719 34354 34372 63132 63132 0.07335545936962262 WTLMLILY 8 Unmodified _WTLMLILY_ 0 0 0 L1PB4_dup5276|chr11:47379677-47380031:-|2.450865615099433|0.3683263574825034|2.73|151.0|20|2|anti-sense L1PB4_dup5276|chr11:47379677-47380031:-|2.450865615099433|0.3683263574825034|2.73|151.0|20|2|anti-sense L1PB4_dup5276|chr11:47379677-47380031:-|2.450865615099433|0.3683263574825034|2.73|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_1 5 526.7965698242188 2 526.796089 1051.57763 NaN NaN NaN NaN NaN NaN NaN 17.196 1 20.722 20.222 21.222 3.5261 0 0 0 0.40738 1 960 960 0.79363 0 1 54897 15320 34355 34373 63133 63133 0.05389947241746995 WTLRHRVR 8 Unmodified _WTLRHRVR_ 0 0 0 REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|4|1|sense REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3344116210938 2 562.333416 1122.65228 0.016708 9.3954E-06 2.0585 0.0011576 2.0752 0.001167 562.3343624293411 22.457 0.051088 22.457 22.426 22.477 0 4 2 2 0 0 0 0.82752 1 2674 2674 0.69038 0 1 65858 + 54898 28822 34356 34374 63134 63134 0.09585890887979076 WTLRHRVR 8 Unmodified _WTLRHRVR_ 0 0 0 REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|4|1|sense REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|4|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3349609375 2 562.333416 1122.65228 0.044859 2.5226E-05 2.2697 0.0012763 2.3146 0.0013016 562.3347285670491 23.702 0.028625 23.702 23.689 23.717 0 6 2 3 0 0 0 0.82752 1 3018 3018 0.69038 0 1 118160 + 54899 28822 34356 34374 63135 63135 0.09585890887979076 WTLRHRVR 8 Unmodified _WTLRHRVR_ 0 0 0 REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|4|1|sense REV__L1PA5_dup1915|chr3:69344861-69350993:+|2.117202530980125|0.0708926685754862|4.9|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.3343505859375 2 562.333416 1122.65228 0.50629 0.0002847 1.4751 0.00082952 1.9814 0.0011142 562.3342153781273 110.73 0.1707 114.31 114.26 114.43 3.5835 26 19 2 0 0 0 0.82752 1 27289 27289 0.69038 0 1 524840 + 54900 28822 34356 34374 63136 63136 0.09585890887979076 WTLSKKKLH 9 Unmodified _WTLSKKKLH_ 0 0 0 ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|1|intron;ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|2|intron ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|1|intron ENSG00000285756.2,BX890604.1,chrX,-,I7.1,3893352,3899215|40|7.26|1|intron MULTI-MSMS UPN47_class_I_Rep_3 4 570.84814453125 2 570.848033 1139.68151 0.50517 0.00028838 0.28004 0.00015986 0.78521 0.00044824 570.8481038588611 108.68 0.62305 112.22 112.09 112.72 3.5382 238 70 4 0 0 0 0.30034 1 26713 26713 13.906 0.86358 1 124580000 54901 5848 34357 34375 63137 63137 0.11725990393620123 WTLWAPRSR 9 Unmodified _WTLWAPRSR_ 0 0 0 REV__AluSc_dup33242|chr20:35727952-35728086:-|1.0884462167608937|0.1263976598434394|3.11|151.0|6|3|sense REV__AluSc_dup33242|chr20:35727952-35728086:-|1.0884462167608937|0.1263976598434394|3.11|151.0|6|3|sense MSMS UPN48_class_I_Rep_1 5 586.8217163085938 2 586.819807 1171.62506 NaN NaN NaN NaN NaN NaN NaN 99.734 1 103.34 102.84 103.84 3.6065 0 0 0 0.38478 1 24075 24075 4.3292 0 1 + 54902 17086 34358 34376 63138 63138 0.04611362556943277 WTMRRPKLPT 10 Unmodified _WTMRRPKLPT_ 0 0 0 REV__ENST00000314830.12_1_9:130536608-130536644:-|nuORF REV__ENST00000314830.12_1_9:130536608-130536644:-|nuORF MSMS UPN46_class_I_Rep_3 1 643.362548828125 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 63.135 1 63.135 62.635 63.635 0 0 0 0 0.53105 1 14160 14160 2.9952 0.49676 1 + 54903 21714 34359 34377 63139 63139 0.08152820436203001 WTMRRPKLPT 10 Unmodified _WTMRRPKLPT_ 0 0 0 REV__ENST00000314830.12_1_9:130536608-130536644:-|nuORF REV__ENST00000314830.12_1_9:130536608-130536644:-|nuORF MSMS UPN46_class_I_Rep_3 1 643.3630981445312 2 643.363524 1284.7125 NaN NaN NaN NaN NaN NaN NaN 67.902 1 67.902 67.402 68.402 0 0 0 0 0.53105 1 15477 15477 2.9952 0.26005 1 + 54904 21714 34359 34377 63140 63140 0.08152820436203001 WTNIYNEF 8 Unmodified _WTNIYNEF_ 0 0 0 REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|50|2|sense REV__L1MA3_dup6677|chr12:9013851-9016616:+|4.005501413920111|0.0963960401202038|5.38|151.0|50|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 544.2506103515625 2 543.748182 1085.48181 0.55034 0.00029924 -0.46617 -0.00025348 0.084161 4.5762E-05 544.2503243138874 73.144 0.10007 76.681 76.617 76.717 3.5373 13 9 2 0 0 0 0.82752 1 17102 17102 8.5933 0 1 266020 + 54905 25087 34360 34378 63141 63141 -0.057511093448283646 WTQRLIVL 8 Unmodified _WTQRLIVL_ 0 0 0 REV__L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|44|2|sense REV__L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|44|2|sense MSMS UPN48_class_I_Rep_3 7 514.81689453125 2 514.816202 1027.61785 NaN NaN NaN NaN NaN NaN NaN 23.189 1 26.939 26.439 27.439 3.7507 0 0 0 0.40738 1 2496 2496 0.79363 0 1 + 54906 28882 34361 34379 63142 63142 0.10514629956514909 WTRAHLPPA 9 Unmodified _WTRAHLPPA_ 0 0 0 ENST00000564033.1_1_16:2086391-2086732:+|nuORF ENST00000564033.1_1_16:2086391-2086732:+|nuORF ENST00000564033.1_1_16:2086391-2086732:+|nuORF MSMS UPN48_class_I_Rep_3 7 524.7860107421875 2 524.787976 1047.5614 NaN NaN NaN NaN NaN NaN NaN 112.63 1 116.29 115.79 116.79 3.6614 0 0 0 0.39518 1 26760 26760 1.8442 0 1 54907 7474 34362 34380 63143 63143 0.039520021198541144 WTRETVTER 9 Unmodified _WTRETVTER_ 0 0 0 REV__ENST00000524237.1_1_8:42338030-42396847:-|nuORF REV__ENST00000524237.1_1_8:42338030-42396847:-|nuORF MSMS UPN48_class_I_Rep_2 6 589.301025390625 2 589.301644 1176.58874 NaN NaN NaN NaN NaN NaN NaN 36.552 1 40.254 39.754 40.754 3.7021 0 0 0 0.3967 1 6152 6152 1.4819 0 1 + 54908 22802 34363 34381 63144 63144 0.0075044086956950196 WTRRWQKGK 9 Unmodified _WTRRWQKGK_ 0 0 0 ENST00000322313.8_1_2:128458821-128459556:-|nuORF ENST00000322313.8_1_2:128458821-128459556:-|nuORF ENST00000322313.8_1_2:128458821-128459556:-|nuORF MSMS UPN46_class_I_Rep_3 1 623.3535766601562 2 623.351806 1244.68906 NaN NaN NaN NaN NaN NaN NaN 25.303 1 25.303 24.803 25.803 0 0 0 0 0.4007 1 3451 3451 0.52476 0.066424 1 54909 6156 34364 34382 63145 63145 0.0765014271387372 WTRTIMFLA 9 Unmodified _WTRTIMFLA_ 0 0 0 REV__L1PREC2_dup6659|chr15:72080604-72085112:-|3.747538229361434|0.0603144834673881|5.96|151.0|137|3|sense REV__L1PREC2_dup6659|chr15:72080604-72085112:-|3.747538229361434|0.0603144834673881|5.96|151.0|137|3|sense MSMS UPN47_class_I_Rep_1 2 570.2564086914062 2 569.807519 1137.60049 NaN NaN NaN NaN NaN NaN NaN 27.27 1 31.036 30.536 31.536 3.7662 0 0 0 0.4029 1 4030 4030 0 0 1 + 54910 30746 34365 34383 63146 63146 0.03718966359224396 WTSFPTVF 8 Unmodified _WTSFPTVF_ 0 0 0 REV__L1MC4_dup24501|chr21:44048881-44049351:-|1.4045643067450897|0.0565715617106809|4.63|151.0|19|1|anti-sense REV__L1MC4_dup24501|chr21:44048881-44049351:-|1.4045643067450897|0.0565715617106809|4.63|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 492.7450866699219 2 492.744911 983.475269 NaN NaN NaN NaN NaN NaN NaN 41.041 1 44.792 44.292 45.292 3.7508 0 0 0 0.40604 1 7455 7455 2.5775 0 1 + 54911 26894 34366 34384 63147 63147 -0.017130025055166698 WTSMLTPVVPA 11 Unmodified _WTSMLTPVVPA_ 0 0 0 AluJo_dup55881|chr14:58261644-58261915:-|1.2911020935809372|0.1758309024444712|2.88|151.0|1|1|sense AluJo_dup55881|chr14:58261644-58261915:-|1.2911020935809372|0.1758309024444712|2.88|151.0|1|1|sense AluJo_dup55881|chr14:58261644-58261915:-|1.2911020935809372|0.1758309024444712|2.88|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 601.3159790039062 2 601.317917 1200.62128 NaN NaN NaN NaN NaN NaN NaN 74.893 1 78.14 77.64 78.64 3.2464 0 0 0 0.38417 1 18556 18556 5.7319 2.4505 1 54912 117 34367 34385 63148 63148 0.02899511948203326 WTSTQGRY 8 Unmodified _WTSTQGRY_ 0 0 0 nc|ENSG00000251692|Q96A99-2|PTX4;ENSG00000251692|ENST00000447419|PTX4 nc|ENSG00000251692|Q96A99-2|PTX4 nc|ENSG00000251692|Q96A99-2|PTX4 MULTI-MSMS UPN47_class_I_Rep_2 3 499.7381896972656 2 499.738148 997.461744 -0.17313 -8.652E-05 0.1835 9.1704E-05 0.010374 5.1844E-06 499.7382017140788 26.621 1.0185 30.115 29.868 30.886 3.4945 168 93 2 0 0 0 0.82752 1 4093 4093 2.0598 0 1 227180 54913 5746 34368 34386 63149 63149 -0.0370886028475752 WTTCMCHPCE 10 Unmodified _WTTCMCHPCE_ 0 0 0 REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|209|3|sense REV__HERV3-int_dup233|chr14:106836776-106845293:-|2.1017829051487413|0.3664977646020842|2.52|151.0|209|3|sense MSMS UPN47_class_I_Rep_3 4 605.7127075195312 2 605.711047 1209.40754 NaN NaN NaN NaN NaN NaN NaN 107.35 1 110.89 110.39 111.39 3.5382 0 0 0 0.53105 1 26213 26213 1.4819 0.8804 1 + 54914 23578 34369 34387 63150 63150 -0.18878603086159274 WTTIERTGS 9 Unmodified _WTTIERTGS_ 0 0 0 REV__HERVL-int_dup1631|chr10:16447745-16449379:-|1.438085419357792|0.1001877734076038|3.84|151.0|106|3|anti-sense REV__HERVL-int_dup1631|chr10:16447745-16449379:-|1.438085419357792|0.1001877734076038|3.84|151.0|106|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 525.7642822265625 2 525.764363 1049.51417 -0.24964 -0.00013125 -0.90495 -0.00047579 -1.1546 -0.00060704 525.7636716977364 31.864 0.38475 35.164 35.026 35.411 3.2991 44 28 2 0 0 0 0.49026 1 5552 5552 1.6526 0.17072 1 71513 + 54915 23857 34370 34388 63151 63151 -0.008603219418091612 WTTLHTLI 8 Unmodified _WTTLHTLI_ 0 0 0 REV__L1MB3_dup15033|chr17:67136291-67136974:+|1.097505397668734|0.063982371680887|4.1|151.0|11|2|sense REV__L1MB3_dup15033|chr17:67136291-67136974:+|1.097505397668734|0.063982371680887|4.1|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 492.77862548828125 2 492.779285 983.544017 NaN NaN NaN NaN NaN NaN NaN 30.594 1 34.339 33.839 34.839 3.7449 0 0 0 0.40604 1 5021 5021 2.5775 0 1 + 54916 25830 34371 34389 63152 63152 0.051586617941893564 WTTVAFSF 8 Unmodified _WTTVAFSF_ 0 0 0 REV__Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|113|2|anti-sense REV__Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|113|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.7370300292969 2 479.737086 957.459619 0.31476 0.000151 -0.10361 -4.9707E-05 0.21115 0.0001013 479.73688929774835 59.273 0.5153 62.76 62.593 63.108 3.4868 59 34 2 0 0 0 0.82752 2 12975 12975;13017 16.942 0 1 126130 + 54917 32409 34372 34390 63153;63154 63153 -0.020812890225670344 WTTVAFSF 8 Unmodified _WTTVAFSF_ 0 0 0 REV__Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|113|2|anti-sense REV__Tigger1_dup2616|chr3:149131261-149133276:+|1.4186916755354857|0.2366534855274203|2.58|151.0|113|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 479.7369079589844 2 479.737086 957.459619 0.18404 8.8291E-05 -0.24959 -0.00011974 -0.065548 -3.1446E-05 479.7369315148022 59.185 0.61098 62.708 62.412 63.023 3.5231 53 40 2 0 0 0 0.82752 3 12856 12856;12904;12954 16.942 0 1 97515 + 54918 32409 34372 34390 63155;63156;63157 63155 -0.020812890225670344 WTTWLRPLG 9 Unmodified _WTTWLRPLG_ 0 0 0 ENST00000340648.5_1_21:45114371-45114962:+|nuORF ENST00000340648.5_1_21:45114371-45114962:+|nuORF ENST00000340648.5_1_21:45114371-45114962:+|nuORF MSMS UPN47_class_I_Rep_3 4 565.7067260742188 2 565.311284 1128.60801 NaN NaN NaN NaN NaN NaN NaN 30.174 1 33.486 32.986 33.986 3.3116 0 0 0 0.39428 1 4973 4973 2.0598 0 1 54919 6231 34373 34391 63158 63158 0.04885441951114444 WTWMFSTY 8 Unmodified _WTWMFSTY_ 0 0 0 ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 ENSG00000100364|ENST00000336156|KIAA0930 MSMS UPN48_class_I_Rep_3 7 561.6890258789062 2 561.241678 1120.4688 NaN NaN NaN NaN NaN NaN NaN 102.35 1 106.13 105.63 106.63 3.776 0 0 0 0.40746 1 24186 24186 0.69038 0 1 54920 1499 34374 34392 63159 63159 -0.08661263728549784 WTWPPDSRL 9 Unmodified _WTWPPDSRL_ 0 0 0 ENST00000394166.7_1_15:96874716-96874860:+|nuORF ENST00000394166.7_1_15:96874716-96874860:+|nuORF ENST00000394166.7_1_15:96874716-96874860:+|nuORF MSMS UPN47_class_I_Rep_2 3 579.76416015625 2 579.290548 1156.56654 NaN NaN NaN NaN NaN NaN NaN 83.197 1 86.609 86.109 87.109 3.4116 0 0 0 0.37692 1 20736 20736 6.2058 0.9089 1 54921 6540 34375 34393 63160 63160 -0.005477388081999379 WTYIEFYS 8 Unmodified _WTYIEFYS_ 0 0 0 ENSG00000128833.13,MYO5C,chr15,-,I21.1,52243560,52244355|25|5.83|2|intron;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF;ENSG00000128833.13,MYO5C,chr15,-,I21.1,52243560,52244355|25|5.83|4|intron;ENSG00000128833.13,MYO5C,chr15,-,I21.1,52243560,52244355|25|5.83|5|intron;ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833.13,MYO5C,chr15,-,I21.1,52243560,52244355|25|5.83|2|intron ENSG00000128833.13,MYO5C,chr15,-,I21.1,52243560,52244355|25|5.83|2|intron MSMS UPN47_class_I_Rep_2 3 554.7532958984375 2 554.752933 1107.49131 NaN NaN NaN NaN NaN NaN NaN 26.516 1 30.01 29.51 30.51 3.4945 0 0 0 0.40604 1 3848 3848 2.5775 0.51773 1 54922 2604 34376 34394 63161 63161 -0.05813341059297272 WTYKFFMNLI 10 Unmodified _WTYKFFMNLI_ 0 0 0 REV__nc|ENSG00000110075|Q5H9R7-6|PPP6R3 REV__nc|ENSG00000110075|Q5H9R7-6|PPP6R3 MSMS UPN47_class_I_Rep_2 3 454.90020751953125 3 454.902015 1361.68422 NaN NaN NaN NaN NaN NaN NaN 14.786 1 18.173 17.673 18.673 3.3871 0 0 0 0.53105 1 651 651 0.69767 0.24315 1 + 54923 18424 34377 34395 63162 63162 0.017840777362607696 WTYRTWQR 8 Unmodified _WTYRTWQR_ 0 0 0 L1PA15_dup3098|chr6:73058424-73059580:+|1.4926427638171451|0.0071020462721461|7.72|149.0|16|2|sense L1PA15_dup3098|chr6:73058424-73059580:+|1.4926427638171451|0.0071020462721461|7.72|149.0|16|2|sense L1PA15_dup3098|chr6:73058424-73059580:+|1.4926427638171451|0.0071020462721461|7.72|149.0|16|2|sense MSMS UPN47_class_I_Rep_2 3 598.8005981445312 2 598.801614 1195.58868 NaN NaN NaN NaN NaN NaN NaN 55.318 1 58.628 58.128 59.128 3.3102 0 0 0 0.40625 1 12576 12576 2.3027 0.24298 1 54924 13922 34378 34396 63163 63163 -0.0012951433977832494 WVALFILL 8 Unmodified _WVALFILL_ 0 0 0 REV__L1ME3B_dup5880|chr12:76413322-76414242:-|2.1462139090114043|0.0207197700684415|6.69|151.0|45|1|anti-sense REV__L1ME3B_dup5880|chr12:76413322-76414242:-|2.1462139090114043|0.0207197700684415|6.69|151.0|45|1|anti-sense MSMS UPN48_class_I_Rep_3 7 487.80706787109375 2 487.807314 973.600075 NaN NaN NaN NaN NaN NaN NaN 38.59 1 42.249 41.749 42.749 3.6595 0 0 0 0.40738 1 6650 6650 0.79363 0 1 + 54925 28070 34379 34397 63164 63164 0.11221914701650348 WVALVRFIF 9 Unmodified _WVALVRFIF_ 0 0 0 REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 576.3450927734375 2 575.84222 1149.66989 0.4948 0.00028492 -0.27005 -0.00015551 0.22474 0.00012942 575.8417518610436 86.639 0.25368 86.639 86.501 86.754 0 43 27 3 0 0 0 0.48414 1 20730 20730 2.3027 0 1 972030 + 54926 18536 34380 34398 63165 63165 0.10103793370240055 WVAPFRRQVVP 11 Unmodified _WVAPFRRQVVP_ 0 0 0 MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|68|3|anti-sense MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|68|3|anti-sense MER52A_dup980|chr11:108206214-108207910:-|1.6596872332865795|0.1915126525606978|3.12|151.0|68|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.262939453125 3 452.262935 1353.76697 0.14224 6.4329E-05 -0.19593 -8.8611E-05 -0.053688 -2.4281E-05 452.2628087425035 58.948 1.3532 62.435 61.475 62.828 3.487 150 83 2 0 0 0 0.68132 1 12963 12963 0.40827 0.40827 1 280000 54927 16103 34381 34399 63166 63166 0.10424155579244143 WVAPPLWL 8 Unmodified _WVAPPLWL_ 0 0 0 THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|52|1|anti-sense THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|52|1|anti-sense THE1-int_dup100|chr7:43716136-43717703:+|1.4866182175502465|0.0304192439336316|5.61|151.0|52|1|anti-sense MSMS UPN47_class_I_Rep_3 4 491.2799377441406 2 491.281463 980.548374 NaN NaN NaN NaN NaN NaN NaN 68.869 1 72.067 71.567 72.567 3.1977 0 0 0 0.40738 1 16760 16760 0.79363 0 1 54928 32858 34382 34400 63167 63167 0.057321710077417265 WVAPVHRR 8 Unmodified _WVAPVHRR_ 0 0 0 REV__ENSG00000164967|ENST00000378959|RPP25L REV__ENSG00000164967|ENST00000378959|RPP25L MSMS UPN47_class_I_Rep_3 4 510.7958984375 2 510.796135 1019.57772 NaN NaN NaN NaN NaN NaN NaN 32.944 1 36.23 35.73 36.73 3.2867 0 0 0 0.40738 1 5815 5815 0.79363 0 1 + 54929 20096 34383 34401 63168 63168 0.06871128076602417 WVARHIVN 8 Unmodified _WVARHIVN_ 0 0 0 Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|127|3|anti-sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|127|3|anti-sense Tigger1_dup2072|chr3:17631063-17632941:+|2.009607392727589|0.012533889302794|7.32|151.0|127|3|anti-sense MSMS UPN46_class_I_Rep_3 1 497.7838134765625 2 497.782693 993.550834 NaN NaN NaN NaN NaN NaN NaN 73.739 1 73.739 73.239 74.239 0 0 0 0 0.40738 1 17105 17105 0.79363 0 1 54930 33050 34384 34402 63169 63169 0.05380019465417263 WVCDSPHQ 8 Unmodified _WVCDSPHQ_ 0 0 0 nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11 nc|ENSG00000187634|Q96NU1-2|SAMD11 nc|ENSG00000187634|Q96NU1-2|SAMD11 MSMS UPN48_class_I_Rep_1 5 486.2054138183594 2 486.205627 970.396701 NaN NaN NaN NaN NaN NaN NaN 106.73 1 110.36 109.86 110.86 3.6299 0 0 0 0.40404 1 25711 25711 5.2307 0 1 54931 16784 34385 34403 63170 63170 -0.0896817808227297 WVCFLGEL 8 Unmodified _WVCFLGEL_ 0 0 0 ENST00000399537.8_1_7:5346469-5346640:-|nuORF ENST00000399537.8_1_7:5346469-5346640:-|nuORF ENST00000399537.8_1_7:5346469-5346640:-|nuORF MSMS UPN47_class_I_Rep_2 3 483.9809875488281 2 483.741314 965.468075 NaN NaN NaN NaN NaN NaN NaN 47.866 1 51.216 50.716 51.716 3.3492 0 0 0 0.39624 1 10297 10297 9.3474 0 1 54932 6589 34386 34404 63171 63171 -0.016040583775861705 WVCHRWLY 8 Unmodified _WVCHRWLY_ 0 0 0 L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|112|1|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|112|1|anti-sense L1PA14_dup1055|chr5:55315921-55318777:+|2.082015384547052|0.0835101360524739|4.64|151.0|112|1|anti-sense MSMS UPN47_class_I_Rep_2 3 581.7852172851562 2 581.784379 1161.5542 NaN NaN NaN NaN NaN NaN NaN 21.692 1 25.116 24.616 25.616 3.4241 0 0 0 0.40738 1 2462 2462 0.79363 0 1 54933 13811 34387 34405 63172 63172 -0.020110537522214145 WVCLVTEAESA 11 Unmodified _WVCLVTEAESA_ 0 0 0 REV__ENSG00000184709|ENST00000371542|LRRC26 REV__ENSG00000184709|ENST00000371542|LRRC26 MULTI-MSMS UPN47_class_I_Rep_3 4 604.7743530273438 2 604.286814 1206.55907 -0.26198 -0.00015831 2.6606 0.0016077 2.3986 0.0014494 604.2879094972575 24.651 0.044178 28.002 27.975 28.019 3.3509 5 4 2 0 0 0 0.65271 1 3336 3336 2.9952 1.151 1 31121 + 54934 20826 34388 34406 63173 63173 -0.03594259190799676 WVCWKWFL 8 Unmodified _WVCWKWFL_ 0 0 0 L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|236|2|anti-sense L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|236|2|anti-sense L1PA15_dup276|chr1:158961414-158967125:+|5.501610820210333|0.1884976178627282|4.87|151.0|236|2|anti-sense MSMS UPN48_class_I_Rep_2 6 584.2933349609375 2 584.294048 1166.57354 NaN NaN NaN NaN NaN NaN NaN 27.005 1 30.636 30.136 31.136 3.6311 0 0 0 0.40738 1 3518 3518 0.79363 0.19213 1 54935 13913 34389 34407 63174 63174 -0.003080974613340004 WVDFLCMF 8 Unmodified _WVDFLCMF_ 0 0 0 L1MB7_dup12293|chrX:74226882-74227189:+|3.479286838978992|0.0433546329596834|6.33|151.0|16|1|anti-sense L1MB7_dup12293|chrX:74226882-74227189:+|3.479286838978992|0.0433546329596834|6.33|151.0|16|1|anti-sense L1MB7_dup12293|chrX:74226882-74227189:+|3.479286838978992|0.0433546329596834|6.33|151.0|16|1|anti-sense MSMS UPN47_class_I_Rep_3 4 530.7345581054688 2 530.735174 1059.4558 NaN NaN NaN NaN NaN NaN NaN 21.476 1 24.825 24.325 25.325 3.3496 0 0 0 0.40738 1 2410 2410 0.79363 0 1 54936 10693 34390 34408 63175 63175 -0.07155418112301959 WVDFTFCYY 9 Unmodified _WVDFTFCYY_ 0 0 0 L1MB5_dup5567|chr10:75526878-75527563:-|3.0106354062885163|0.007044574361131|8.74|150.0|50|3|anti-sense L1MB5_dup5567|chr10:75526878-75527563:-|3.0106354062885163|0.007044574361131|8.74|150.0|50|3|anti-sense L1MB5_dup5567|chr10:75526878-75527563:-|3.0106354062885163|0.007044574361131|8.74|150.0|50|3|anti-sense MSMS UPN47_class_I_Rep_2 3 622.26025390625 2 622.260068 1242.50558 NaN NaN NaN NaN NaN NaN NaN 55.875 1 59.185 58.685 59.685 3.3102 0 0 0 0.40038 1 12746 12746 0.6015 0 1 54937 10628 34391 34409 63176 63176 -0.10597011902632403 WVDPYEVSY 9 Unmodified _WVDPYEVSY_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_1 2 579.26123046875 2 579.261122 1156.50769 0.33664 0.000195 0.57007 0.00033022 0.9067 0.00052522 579.2614056938412 68.433 0.75057 71.798 71.445 72.196 3.3646 127 57 3 0 0 0 0.0070866 4 16493 16450;16493;16535;16585 71.922 35.795 1 474120 54938 2808 34392 34410 63177;63178;63179;63180 63178 -0.06430259893204493 WVDPYEVSY 9 Unmodified _WVDPYEVSY_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_2 3 579.2616577148438 2 579.261122 1156.50769 0.39468 0.00022862 0.49268 0.00028539 0.88736 0.00051401 579.261277209071 68.679 0.71716 71.948 71.601 72.318 3.2696 160 62 3 0 0 0 0.0067818 8 16617 16540;16544;16562;16583;16617;16654;16704;16706 85.272 49.145 1 411980 54939 2808 34392 34410 63181;63182;63183;63184;63185;63186;63187;63188 63185 -0.06430259893204493 WVDPYEVSY 9 Unmodified _WVDPYEVSY_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_2 3 579.2611694335938 2 579.261122 1156.50769 0.39869 0.00023095 -1.432 -0.00082949 -1.0333 -0.00059854 579.2591324359823 69.072 0.10547 72.348 72.312 72.417 3.2761 10 8 2 0 0 0 0.16559 1 16758 16758 24.021 9.1823 1 82691 54940 2808 34392 34410 63189 63189 -0.06430259893204493 WVDPYEVSY 9 Unmodified _WVDPYEVSY_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MSMS UPN47_class_I_Rep_3 4 579.2615966796875 2 579.261122 1156.50769 0.44379 0.00025707 0.36089 0.00020905 0.80468 0.00046612 579.2611661726536 68.669 0.80929 71.867 71.491 72.3 3.1977 153 61 3 0 0 0 0.032038 6 16693 16617;16656;16693;16783;16797;16817 56.177 27.197 1 441630 54941 2808 34392 34410 63190;63191;63192;63193;63194;63195 63192 -0.06430259893204493 WVDPYEVSY 9 Unmodified _WVDPYEVSY_ 0 0 0 ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2 ENSG00000133639|ENST00000256015|BTG1 ENSG00000133639|ENST00000256015|BTG1 MULTI-MATCH UPN47_class_I_Rep_1 2 2 579.261122 1156.50769 0.33947 0.00019664 -4.7906 -0.002775 -4.4511 -0.0025783 579.7613481835934 68.938 0.10814 72.305 72.225 72.333 3.3678 -0.021402 -0.0017187 NaN 24.021 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 58390 54942 2808 34392 34410 -0.06430259893204493 WVEAHLLL 8 Unmodified _WVEAHLLL_ 0 0 0 REV__ENST00000379638.8_1_5:112222839-112238104:-|nuORF REV__ENST00000379638.8_1_5:112222839-112238104:-|nuORF MSMS UPN47_class_I_Rep_1 2 490.7820129394531 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 116.32 1 119.92 119.42 120.42 3.6036 0 0 0 0.40738 1 28801 28801 0.79363 0 1 + 54943 22043 34393 34411 63196 63196 0.05850965656816243 WVEDRLKI 8 Unmodified _WVEDRLKI_ 0 0 0 L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|29|1|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|29|1|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|29|1|sense MSMS UPN48_class_I_Rep_2 6 529.8055419921875 2 529.803291 1057.59203 NaN NaN NaN NaN NaN NaN NaN 19.376 1 23.026 22.526 23.526 3.6497 0 0 0 0.40746 1 1468 1468 0.69038 0 1 54944 9384 34394 34412 63197 63197 0.06553735714237519 WVEIHKTIPK 10 Unmodified _WVEIHKTIPK_ 0 0 0 L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|12|1|sense L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|12|1|sense L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 625.8699340820312 2 625.866423 1249.71829 NaN NaN NaN NaN NaN NaN NaN 91.847 1 95.71 95.21 96.21 3.8634 0 0 0 0.53105 1 21784 21784 5.7319 0.83484 1 54945 8870 34395 34413 63198 63198 0.1034224221950808 WVENDDLH 8 Unmodified _WVENDDLH_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MSMS UPN46_class_I_Rep_3 1 514.2280883789062 2 514.227613 1026.44067 NaN NaN NaN NaN NaN NaN NaN 16.246 1 16.246 15.746 16.746 0 0 0 0 0.40746 1 1079 1079 0.69038 0 1 + 54946 18162 34396 34414 63199 63199 -0.07148870384276051 WVEWYFCF 8 Unmodified _WVEWYFCF_ 0 0 0 L1PA16_dup12001|chr14:90990169-90991046:+|1.186035218532583|0.0300577996702606|5.3|150.0|34|1|anti-sense L1PA16_dup12001|chr14:90990169-90991046:+|1.186035218532583|0.0300577996702606|5.3|150.0|34|1|anti-sense L1PA16_dup12001|chr14:90990169-90991046:+|1.186035218532583|0.0300577996702606|5.3|150.0|34|1|anti-sense MSMS UPN47_class_I_Rep_1 2 590.2535400390625 2 590.252046 1178.48954 NaN NaN NaN NaN NaN NaN NaN 68.576 1 71.94 71.44 72.44 3.3646 0 0 0 0.40604 1 16564 16564 2.5775 0 1 54947 14036 34397 34415 63200 63200 -0.09256673348909317 WVFFHIYF 8 Unmodified _WVFFHIYF_ 0 0 0 REV__LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|145|1|anti-sense REV__LTR25-int_dup90|chr4:173283658-173287132:-|2.3045025565696955|0.1502423386498174|3.94|151.0|145|1|anti-sense MSMS UPN48_class_I_Rep_2 6 579.7930908203125 2 579.792195 1157.56984 NaN NaN NaN NaN NaN NaN NaN 35.191 1 38.865 38.365 39.365 3.6735 0 0 0 0.4032 1 5768 5768 6.3541 0.14832 1 + 54948 30889 34398 34416 63201 63201 -0.002644439635332674 WVFFWPVC 8 Unmodified _WVFFWPVC_ 0 0 0 REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|221|1|anti-sense REV__L1PB1_dup5068|chr6:72901179-72906928:-|2.941919428854081|0.0196433716435763|7.23|151.0|221|1|anti-sense MSMS UPN47_class_I_Rep_1 2 542.2447509765625 2 542.259674 1082.50479 NaN NaN NaN NaN NaN NaN NaN 36.425 1 40.094 39.594 40.594 3.6692 0 0 0 0.40738 1 6796 6796 0.79363 0 1 + 54949 30430 34399 34417 63202 63202 -0.03315761761041358 WVFLFYCM 8 Unmodified _WVFLFYCM_ 0 0 0 MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|86|3|anti-sense;MSTA-int_dup2615|chr14:61373903-61375447:-|1.3382183763468345|0.0216543119466904|5.95|151.0|70|2|anti-sense;THE1D-int_dup852|chr5:71159641-71161137:-|4.9677794867887926|0.1777362318671129|4.8|151.0|76|2|anti-sense;THE1D-int_dup850|chr5:70159314-70160810:-|3.608149314496732|0.178733719125222|4.34|151.0|76|2|anti-sense;THE1D-int_dup849|chr5:69957359-69958855:+|5.149180603118277|0.1300440809984312|5.31|141.0|75|2|anti-sense MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|86|3|anti-sense MSTA-int_dup1652|chr9:70328165-70329766:-|3.21225230758688|0.1530613271933371|4.39|151.0|86|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.7509765625 2 554.753367 1107.49218 NaN NaN NaN NaN NaN NaN NaN 117.33 1 120.99 120.49 121.49 3.6607 0 0 0 0.40738 1 28117 28117 0.79363 0 1 54950 16546 34400 34418 63203 63203 -0.05726541215585712 WVFLFYCTV 9 Unmodified _WVFLFYCTV_ 0 0 0 THE1D-int_dup2531|chr21:44790796-44792312:+|1.7547009766734902|0.3272498780880157|2.42|151.0|60|1|anti-sense THE1D-int_dup2531|chr21:44790796-44792312:+|1.7547009766734902|0.3272498780880157|2.42|151.0|60|1|anti-sense THE1D-int_dup2531|chr21:44790796-44792312:+|1.7547009766734902|0.3272498780880157|2.42|151.0|60|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.2936401367188 2 589.291171 1176.56779 NaN NaN NaN NaN NaN NaN NaN 55.415 1 58.923 58.423 59.423 3.5082 0 0 0 0.39326 1 11826 11826 2.3027 0 1 54951 32962 34401 34419 63204 63204 -0.01343240763662834 WVFRLILY 8 Unmodified _WVFRLILY_ 0 0 0 L1PB3_dup605|chr3:121957030-121957610:+|2.031759025621936|0.0082039884051901|7.95|150.0|45|3|anti-sense L1PB3_dup605|chr3:121957030-121957610:+|2.031759025621936|0.0082039884051901|7.95|150.0|45|3|anti-sense L1PB3_dup605|chr3:121957030-121957610:+|2.031759025621936|0.0082039884051901|7.95|150.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 555.3289794921875 2 555.328945 1108.64334 NaN NaN NaN NaN NaN NaN NaN 74.681 1 78.171 77.671 78.671 3.49 0 0 0 0.40798 1 17657 17657 0 0 1 54952 15285 34402 34420 63205 63205 0.09336104478961715 WVFVVIYKF 9 Unmodified _WVFVVIYKF_ 0 0 0 L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|156|3|anti-sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|156|3|anti-sense L1MA2_dup410|chr1:213189512-213191809:-|2.1469700761796418|0.0852982417971946|4.65|151.0|156|3|anti-sense MSMS UPN47_class_I_Rep_1 2 600.8449096679688 2 600.844428 1199.6743 NaN NaN NaN NaN NaN NaN NaN 75.208 1 78.611 78.111 79.111 3.4034 0 0 0 0.40038 1 18552 18552 0.6015 0 1 54953 9372 34403 34421 63206 63206 0.08245257793169003 WVGPFYPGRR 10 Unmodified _WVGPFYPGRR_ 0 0 0 REV__ENST00000282146.4_1_14:90528121-90528586:+|nuORF REV__ENST00000282146.4_1_14:90528121-90528586:+|nuORF MSMS UPN48_class_I_Rep_3 7 617.8304443359375 2 617.827632 1233.64071 NaN NaN NaN NaN NaN NaN NaN 37.186 1 40.849 40.349 41.349 3.663 0 0 0 0.53105 1 6238 6238 1.6526 0.17072 1 + 54954 21627 34404 34422 63207 63207 0.03323649073968227 WVGRISIVKMA 11 Unmodified _WVGRISIVKMA_ 0 0 0 L1PA4_dup829|chr2:138538748-138544882:-|3.0516079956799063|0.051907729169787|5.88|151.0|167|3|sense;L1PA4_dup9297|chr12:1733611-1736914:-|2.727589065125506|0.0522469925947301|5.71|151.0|84|3|sense;L1PA3_dup651|chr1:211953403-211955572:-|1.0915327014028464|0.2191042380166449|2.32|151.0|35|2|sense;L1PA3_dup8934|chr13:49013627-49019628:-|2.4148175640842355|0.4338922068978977|2.48|151.0|28|1|sense;L1PA4_dup1960|chr3:51455921-51462098:+|2.701121380423234|0.0385609547211641|6.13|151.0|31|1|sense;L1PA4_dup3409|chr4:169495542-169500000:-|1.1574191829721985|0.0617168130962013|4.23|151.0|23|1|sense L1PA4_dup829|chr2:138538748-138544882:-|3.0516079956799063|0.051907729169787|5.88|151.0|167|3|sense L1PA4_dup829|chr2:138538748-138544882:-|3.0516079956799063|0.051907729169787|5.88|151.0|167|3|sense MSMS UPN47_class_I_Rep_2 3 630.369873046875 2 630.368275 1258.722 NaN NaN NaN NaN NaN NaN NaN 37.71 1 41.098 40.598 41.598 3.3879 0 0 0 0.38417 1 7221 7221 1.1933 0 1 54955 14279 34405 34423 63208 63208 0.10298588721707347 WVGYCRSFKY 10 Unmodified _WVGYCRSFKY_ 0 0 0 L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|77|2|anti-sense L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|77|2|anti-sense L1PA11_dup3721|chr16:48313057-48314585:-|1.3720185809248138|0.0339192017170045|5.34|151.0|77|2|anti-sense MSMS UPN48_class_I_Rep_1 5 436.8787841796875 3 436.877981 1307.61211 NaN NaN NaN NaN NaN NaN NaN 79.644 1 83.193 82.693 83.693 3.5487 0 0 0 0.53105 1 19020 19020 0.77653 0 1 54956 13678 34406 34424 63209 63209 -0.02938836617454399 WVHIYIYI 8 Unmodified _WVHIYIYI_ 0 0 0 L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|165|1|anti-sense L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|165|1|anti-sense L1PA7_dup4401|chr5:94822067-94825884:-|5.701803070059376|0.0938125654389232|5.93|151.0|165|1|anti-sense MSMS UPN46_class_I_Rep_3 1 553.80419921875 2 553.805303 1105.59605 NaN NaN NaN NaN NaN NaN NaN 95.735 1 95.735 95.235 96.235 0 0 0 0 0.40738 1 23258 23258 0.79363 0 1 54957 14827 34407 34425 63210 63210 0.047478252079372396 WVHLQESFFQ 10 Unmodified _WVHLQESFFQ_ 0 0 0 Tigger2b_Pri_dup802|chr5:177668003-177669089:+|1.1389505975665482|0.0415472403014946|4.78|150.0|28|3|sense Tigger2b_Pri_dup802|chr5:177668003-177669089:+|1.1389505975665482|0.0415472403014946|4.78|150.0|28|3|sense Tigger2b_Pri_dup802|chr5:177668003-177669089:+|1.1389505975665482|0.0415472403014946|4.78|150.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 440.8843994140625 3 440.8839 1319.62987 NaN NaN NaN NaN NaN NaN NaN 26.05 1 26.05 25.55 26.55 0 0 0 0 0.53105 1 3669 3669 0.77653 0 1 54958 33347 34408 34426 63211 63211 -0.017157980909587423 WVHRQNYRWER 11 Unmodified _WVHRQNYRWER_ 0 0 0 REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF MSMS UPN47_class_I_Rep_3 4 543.835205078125 3 543.943035 1628.80728 NaN NaN NaN NaN NaN NaN NaN 12.93 1 16.303 15.803 16.803 3.3734 0 0 0 0.38417 1 186 186 0.094841 0 1 + 54959 22300 34409 34427 63212 63212 0.018024702317234187 WVHVARRR 8 Unmodified _WVHVARRR_ 0 0 0 REV__L1MC1_dup8832|chr10:96882418-96883032:-|1.0632845239956514|0.0061009585928801|7.45|150.0|20|3|sense REV__L1MC1_dup8832|chr10:96882418-96883032:-|1.0632845239956514|0.0061009585928801|7.45|150.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.320309 1078.62606 NaN NaN NaN NaN NaN NaN NaN 44.256 1 44.256 43.756 44.756 0 0 0 0 0.40738 1 8903 8903 0.79363 0 1 + 54960 26614 34410 34428 63213 63213 0.08989621716500551 WVIALTFL 8 Unmodified _WVIALTFL_ 0 0 0 REV__Tigger5_dup181|chr4:88028534-88028849:-|2.0451209071597174|0.0410246014181755|5.64|150.0|23|3|anti-sense REV__Tigger5_dup181|chr4:88028534-88028849:-|2.0451209071597174|0.0410246014181755|5.64|150.0|23|3|anti-sense MSMS UPN47_class_I_Rep_1 2 481.78656005859375 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 25.644 1 29.402 28.902 29.902 3.7575 0 0 0 0.40738 1 3549 3549 0.79363 0 1 + 54961 32798 34411 34429 63214 63214 0.08137037804931424 WVIHLRKH 8 Unmodified _WVIHLRKH_ 0 0 0 REV__L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|16|3|sense REV__L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|16|3|sense MSMS UPN48_class_I_Rep_2 6 545.2651977539062 2 544.827435 1087.64032 NaN NaN NaN NaN NaN NaN NaN 23.062 1 26.705 26.205 27.205 3.6432 0 0 0 0.40738 1 2452 2452 0.79363 0 1 + 54962 26031 34412 34430 63215 63215 0.10000274144795185 WVIHLRKH 8 Unmodified _WVIHLRKH_ 0 0 0 REV__L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|16|3|sense REV__L1MB5_dup113|chr1:22083804-22084335:-|1.0538766680967635|0.0416059155554713|4.66|151.0|16|3|sense MSMS UPN48_class_I_Rep_3 7 545.2883911132812 2 544.827435 1087.64032 NaN NaN NaN NaN NaN NaN NaN 111.88 1 115.54 115.04 116.04 3.6614 0 0 0 0.40738 1 26564 26564 0.79363 0 1 + 54963 26031 34412 34430 63216 63216 0.10000274144795185 WVIKCMLR 8 Unmodified _WVIKCMLR_ 0 0 0 HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|98|1|anti-sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|98|1|anti-sense HERVH-int_dup3631|chrX:74127047-74130197:-|2.544516684385471|0.2191171110924852|3.54|151.0|98|1|anti-sense MSMS UPN48_class_I_Rep_2 6 524.7932739257812 2 524.793358 1047.57216 NaN NaN NaN NaN NaN NaN NaN 54.295 1 57.877 57.377 58.377 3.5817 0 0 0 0.40404 1 11462 11462 5.2307 0 1 54964 8146 34413 34431 63217 63217 0.050279451782444085 WVILVIPWNNR 11 Unmodified _WVILVIPWNNR_ 0 0 0 REV__MER20_dup9613|chr10:21712629-21712836:-|1.0585906559161524|0.0734046107102456|3.85|151.0|3|1|sense REV__MER20_dup9613|chr10:21712629-21712836:-|1.0585906559161524|0.0734046107102456|3.85|151.0|3|1|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 470.274658203125 3 470.60659 1408.79794 0.12862 6.0527E-05 -0.12197 -5.74E-05 0.0066447 3.127E-06 470.6063905198996 54.874 0.70116 58.383 57.919 58.62 3.5082 62 48 2 0 0 0 22.551 1 11696 11696 0.50596 0.50596 1 154020 + 54965 31162 34414 34432 63218 63218 0.1098930889352232 WVIMLKRI 8 Unmodified _WVIMLKRI_ 0 0 0 REV__ENST00000447540.5_2_16:53330914-53337709:+|nuORF REV__ENST00000447540.5_2_16:53330914-53337709:+|nuORF MSMS UPN48_class_I_Rep_3 7 529.8311157226562 2 529.830798 1057.64704 NaN NaN NaN NaN NaN NaN NaN 62.571 1 66.081 65.581 66.581 3.5104 0 0 0 0.40738 1 13918 13918 0.79363 0 1 + 54966 22371 34415 34433 63219 63219 0.12052450981150287 WVIMMYIC 8 Unmodified _WVIMMYIC_ 0 0 0 L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|14|1|sense L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|14|1|sense L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|14|1|sense MSMS UPN48_class_I_Rep_3 7 529.7474975585938 2 529.747227 1057.4799 NaN NaN NaN NaN NaN NaN NaN 26.23 1 29.996 29.496 30.496 3.7663 0 0 0 0.40738 1 3294 3294 0.79363 0 1 54967 11190 34416 34434 63220 63220 -0.04653900950256684 WVIRFFIL 8 Unmodified _WVIRFFIL_ 0 0 0 REV__L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|102|2|anti-sense REV__L1MB5_dup1623|chr3:120064308-120066085:+|1.067878848907285|0.0173777244277758|5.94|150.0|102|2|anti-sense MSMS UPN47_class_I_Rep_2 3 547.3453369140625 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 94.762 1 98.234 97.734 98.734 3.472 0 0 0 0.40738 1 23345 23345 0.79363 0 1 + 54968 26034 34417 34435 63221 63221 0.10580408341570546 WVIRLLFF 8 Unmodified _WVIRLLFF_ 0 0 0 REV__L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|167|3|anti-sense REV__L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|167|3|anti-sense MSMS UPN46_class_I_Rep_3 1 547.6395874023438 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 110.57 1 110.57 110.07 111.07 0 0 0 0 0.40738 1 27235 27235 0.79363 0 1 + 54969 30247 34418 34436 63222 63222 0.10580408341570546 WVIVAFPK 8 Unmodified _WVIVAFPK_ 0 0 0 REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|165|3|anti-sense REV__L1ME1_dup8184|chr4:88623785-88626214:-|1.745908011729621|0.0390767259959187|5.48|150.0|165|3|anti-sense MSMS UPN47_class_I_Rep_2 3 480.2900695800781 2 480.289288 958.564024 NaN NaN NaN NaN NaN NaN NaN 12.502 1 15.891 15.391 16.391 3.3885 0 0 0 0.40746 1 91 91 0.69038 0 1 + 54970 27798 34419 34437 63223 63223 0.08308457524788082 WVIWLVGLC 9 Unmodified _WVIWLVGLC_ 0 0 0 L1ME1_dup21718|chr11:117066838-117067693:+|9.315467991631566|0.0290213230132324|8.33|151.0|51|2|anti-sense L1ME1_dup21718|chr11:117066838-117067693:+|9.315467991631566|0.0290213230132324|8.33|151.0|51|2|anti-sense L1ME1_dup21718|chr11:117066838-117067693:+|9.315467991631566|0.0290213230132324|8.33|151.0|51|2|anti-sense MSMS UPN48_class_I_Rep_3 7 544.8018798828125 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 18.144 1 21.723 21.223 22.223 3.5788 0 0 0 0.4029 1 1152 1152 0 0 1 54971 12300 34420 34438 63224 63224 0.04856769335901845 WVIYIAKKF 9 Unmodified _WVIYIAKKF_ 0 0 0 MSTB2_dup698|chr7:76041377-76041761:+|1.2102589056797242|0.0715080225357024|4.08|151.0|20|2|anti-sense MSTB2_dup698|chr7:76041377-76041761:+|1.2102589056797242|0.0715080225357024|4.08|151.0|20|2|anti-sense MSTB2_dup698|chr7:76041377-76041761:+|1.2102589056797242|0.0715080225357024|4.08|151.0|20|2|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3482055664062 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 43.175 1 43.175 42.675 43.675 0 0 0 0 0.40038 1 8598 8598 0.6015 0 1 54972 16590 34421 34439 63225 63225 0.10852660167461181 WVIYKGKK 8 Unmodified _WVIYKGKK_ 0 0 0 THE1C_dup9749|chr22:40165565-40165936:-|1.4821421965599113|0.0170331250918505|6.44|151.0|16|1|anti-sense;THE1B_dup4358|chr3:136705441-136705829:+|1.280518968727646|0.0090666920641004|7.14|151.0|15|1|anti-sense THE1C_dup9749|chr22:40165565-40165936:-|1.4821421965599113|0.0170331250918505|6.44|151.0|16|1|anti-sense THE1C_dup9749|chr22:40165565-40165936:-|1.4821421965599113|0.0170331250918505|6.44|151.0|16|1|anti-sense MSMS UPN48_class_I_Rep_2 6 511.26025390625 2 511.313295 1020.61204 NaN NaN NaN NaN NaN NaN NaN 47.562 1 51.298 50.798 51.798 3.7361 0 0 0 0.40581 1 9407 9407 2.8892 0 1 54973 32885 34422 34440 63226 63226 0.10255531444852295 WVKDLTEKP 9 Unmodified _WVKDLTEKP_ 0 0 0 L1M5_dup16356|chr5:36968708-36969681:+|2.117573440721522|0.0774861643971936|4.77|151.0|12|1|sense L1M5_dup16356|chr5:36968708-36969681:+|2.117573440721522|0.0774861643971936|4.77|151.0|12|1|sense L1M5_dup16356|chr5:36968708-36969681:+|2.117573440721522|0.0774861643971936|4.77|151.0|12|1|sense MSMS UPN46_class_I_Rep_3 1 557.8170776367188 2 558.308406 1114.60226 NaN NaN NaN NaN NaN NaN NaN 56.433 1 56.433 55.933 56.933 0 0 0 0 0.3967 1 12308 12308 1.4819 0.28856 1 54974 9101 34423 34441 63227 63227 0.04954298648794975 WVKELQRQ 8 Unmodified _WVKELQRQ_ 0 0 0 ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C;ENST00000537929.1_1_12:4744653-4744893:-|nuORF;ENST00000549034.1_1_12:56383771-56384735:+|nuORF;ENST00000469122.5_1_3:19992498-20019915:+|nuORF;ENST00000473608.1_1_3:20017064-20025312:+|nuORF;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000111540|ENST00000360299|RAB5B ENSG00000108774|ENST00000346213|RAB5C ENSG00000108774|ENST00000346213|RAB5C MSMS UPN47_class_I_Rep_2 3 543.8060913085938 2 543.806365 1085.59818 NaN NaN NaN NaN NaN NaN NaN 32.976 1 36.431 35.931 36.931 3.4547 0 0 0 0.40625 1 5782 5782 2.3027 0 1 54975 1875 34424 34442 63228 63228 0.05880253945747427 WVKERNKY 8 Unmodified _WVKERNKY_ 0 0 0 L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|73|1|anti-sense L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|73|1|anti-sense L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|73|1|anti-sense MSMS UPN47_class_I_Rep_3 4 561.7879638671875 2 561.806365 1121.59818 NaN NaN NaN NaN NaN NaN NaN 65.189 1 68.369 67.869 68.869 3.1795 0 0 0 0.4044 1 15641 15641 4.756 2.0208 1 54976 11851 34425 34443 63229 63229 0.04224253945744749 WVKLAKTKW 9 Unmodified _WVKLAKTKW_ 0 0 0 MER41E_dup137|chr6:37944732-37945304:-|1.762149981140697|0.0133698476488726|7.04|151.0|20|3|sense MER41E_dup137|chr6:37944732-37945304:-|1.762149981140697|0.0133698476488726|7.04|151.0|20|3|sense MER41E_dup137|chr6:37944732-37945304:-|1.762149981140697|0.0133698476488726|7.04|151.0|20|3|sense MSMS UPN48_class_I_Rep_2 6 580.3533325195312 2 580.352951 1158.69135 NaN NaN NaN NaN NaN NaN NaN 56.085 1 59.619 59.119 60.119 3.5333 0 0 0 0.39598 1 12012 12012 1.6526 0 1 54977 15974 34426 34444 63230 63230 0.1183517839895103 WVKPGFLF 8 Unmodified _WVKPGFLF_ 0 0 0 ENST00000464942.6_1_12:122710297-122710606:-|nuORF ENST00000464942.6_1_12:122710297-122710606:-|nuORF ENST00000464942.6_1_12:122710297-122710606:-|nuORF MSMS UPN48_class_I_Rep_1 5 497.28173828125 2 497.281463 992.548374 NaN NaN NaN NaN NaN NaN NaN 57.897 1 61.391 60.891 61.891 3.4942 0 0 0 0.40746 1 12584 12584 0.69038 0 1 54978 6885 34427 34445 63231 63231 0.05180171007748413 WVKPKLVMKI 10 Unmodified _WVKPKLVMKI_ 0 0 0 REV__L1MC3_dup5634|chr7:102418350-102418876:-|1.6470252319653866|0.088239689827509|4.22|151.0|28|1|anti-sense REV__L1MC3_dup5634|chr7:102418350-102418876:-|1.6470252319653866|0.088239689827509|4.22|151.0|28|1|anti-sense MSMS UPN47_class_I_Rep_1 2 621.3934326171875 2 621.393762 1240.77297 NaN NaN NaN NaN NaN NaN NaN 97.253 1 101.03 100.53 101.53 3.7767 0 0 0 0.53105 1 24103 24103 0.45834 0 1 + 54979 26763 34428 34446 63232 63232 0.16221537766568872 WVLAHEII 8 Unmodified _WVLAHEII_ 0 0 0 L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|274|2|anti-sense L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|274|2|anti-sense L1PB1_dup11230|chr15:30735635-30742017:+|6.755087596862283|0.1509771557627413|5.48|151.0|274|2|anti-sense MSMS UPN46_class_I_Rep_3 1 490.7836608886719 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.18 1 112.18 111.68 112.68 0 0 0 0 0.40738 1 27689 27689 0.79363 0 1 54980 15014 34429 34447 63233 63233 0.05850965656816243 WVLAHYPA 8 Unmodified _WVLAHYPA_ 0 0 0 L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|365|3|anti-sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|365|3|anti-sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|365|3|anti-sense MSMS UPN46_class_I_Rep_3 1 478.75286865234375 2 478.75307 955.491587 NaN NaN NaN NaN NaN NaN NaN 113.98 1 113.98 113.48 114.48 0 0 0 0 0.40738 1 28158 28158 0.79363 0 1 54981 13675 34430 34448 63234 63234 0.012061234512202645 WVLALFKV 8 Unmodified _WVLALFKV_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|130|2|anti-sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|130|2|anti-sense MSMS UPN48_class_I_Rep_1 5 488.3063659667969 2 488.304939 974.595324 NaN NaN NaN NaN NaN NaN NaN 61.219 1 64.687 64.187 65.187 3.4678 0 0 0 0.40581 1 13603 13603 2.8892 0 1 + 54982 23747 34431 34449 63235 63235 0.10701030558891489 WVLALNHPL 9 Unmodified _WVLALNHPL_ 0 0 0 REV__Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|123|2|anti-sense REV__Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|123|2|anti-sense MSMS UPN47_class_I_Rep_1 2 531.817626953125 2 531.808377 1061.6022 NaN NaN NaN NaN NaN NaN NaN 79.523 1 82.988 82.488 83.488 3.465 0 0 0 0.39326 1 19819 19819 2.3027 0 1 + 54983 32637 34432 34450 63236 63236 0.07386343439452503 WVLELSLV 8 Unmodified _WVLELSLV_ 0 0 0 REV__L1MA8_dup8159|chr12:102052018-102053779:+|1.1781615432574926|0.1869048602593352|2.66|151.0|61|1|anti-sense REV__L1MA8_dup8159|chr12:102052018-102053779:+|1.1781615432574926|0.1869048602593352|2.66|151.0|61|1|anti-sense MSMS UPN46_class_I_Rep_3 1 479.7855529785156 2 479.784036 957.553519 NaN NaN NaN NaN NaN NaN NaN 49.767 1 49.767 49.267 50.267 0 0 0 0 0.40604 1 10471 10471 2.5775 0 1 + 54984 25577 34433 34451 63237 63237 0.0730443007971644 WVLFALAF 8 Unmodified _WVLFALAF_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|245|1|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|245|1|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|245|1|anti-sense MSMS UPN48_class_I_Rep_2 6 484.2071838378906 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 19.345 1 22.995 22.495 23.495 3.6497 0 0 0 0.40798 1 1460 1460 0 0 1 54985 9423 34434 34452 63238 63238 0.05332768633445539 WVLFFKIH 8 Unmodified _WVLFFKIH_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 546.302734375 2 545.315838 1088.61712 0.49103 0.00026777 2.0136 0.001098 2.5046 0.0013658 545.8182455622537 84.489 0.08741 88.055 87.997 88.084 3.5655 12 9 2 0 0 0 0.82752 1 21126 21126 0.79363 0 1 41096 54986 9959 34435 34453 63239 63239 0.07635835307473826 WVLFFKIH 8 Unmodified _WVLFFKIH_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 545.315838 1088.61712 0.49103 0.00026777 2.0136 0.001098 2.5046 0.0013658 545.8182455622537 84.489 0.08741 88.055 87.997 88.084 3.5655 0.039908 0.0002542 NaN 0.79363 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 41096 54987 9959 34435 34453 0.07635835307473826 WVLFFKIH 8 Unmodified _WVLFFKIH_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|321|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 545.315838 1088.61712 0.46809 0.00025526 1.6169 0.00088172 2.085 0.001137 545.31642584007 84.634 0.049774 87.996 87.956 88.006 3.3615 -0.01894 -0.00017845 NaN 0.79363 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 49880 54988 9959 34435 34453 0.07635835307473826 WVLHRPPPL 9 Unmodified _WVLHRPPPL_ 0 0 0 REV__Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|69|3|anti-sense REV__Tigger2_dup2459|chr16:89376739-89378071:+|3.886448367477744|0.0608261428916429|6.0|151.0|69|3|anti-sense MSMS UPN48_class_I_Rep_1 5 557.8308715820312 2 557.829643 1113.64473 NaN NaN NaN NaN NaN NaN NaN 91.828 1 95.454 94.954 95.954 3.626 0 0 0 0.39428 1 22068 22068 2.0598 0.40713 1 + 54989 32654 34436 34454 63240 63240 0.09245738567688022 WVLIGWRG 8 Unmodified _WVLIGWRG_ 0 0 0 ENSG00000107929.15,LARP4B,chr10,-,I13.1,829735,830866|47|17.33|1|intron ENSG00000107929.15,LARP4B,chr10,-,I13.1,829735,830866|47|17.33|1|intron ENSG00000107929.15,LARP4B,chr10,-,I13.1,829735,830866|47|17.33|1|intron MSMS UPN48_class_I_Rep_3 7 493.75103759765625 2 493.782162 985.549771 NaN NaN NaN NaN NaN NaN NaN 29.957 1 33.686 33.186 34.186 3.7286 0 0 0 0.40738 1 4263 4263 0.79363 0 1 54990 1841 34437 34455 63241 63241 0.05641805096513508 WVLILVLL 8 Unmodified _WVLILVLL_ 0 0 0 Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|145|3|anti-sense Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|145|3|anti-sense Tigger1_dup10611|chr16:48282438-48284788:+|2.023338483075643|0.0594168358924036|5.09|151.0|145|3|anti-sense MSMS UPN46_class_I_Rep_3 1 484.8394470214844 2 484.830789 967.647025 NaN NaN NaN NaN NaN NaN NaN 29.857 1 29.857 29.357 30.357 0 0 0 0 0.40798 1 4784 4784 0 0 1 54991 32989 34438 34456 63242 63242 0.16190774252788742 WVLKGTHV 8 Unmodified _WVLKGTHV_ 0 0 0 REV__HERV15-int_dup70|chr16:41497-42751:+|2.6292189779183137|0.132102718314329|4.31|151.0|48|2|anti-sense REV__HERV15-int_dup70|chr16:41497-42751:+|2.6292189779183137|0.132102718314329|4.31|151.0|48|2|anti-sense MSMS UPN48_class_I_Rep_1 5 470.27484130859375 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 55.149 1 58.657 58.157 59.157 3.5082 0 0 0 0.40625 1 11743 11743 2.3027 1.5091 1 + 54992 23540 34439 34457 63243 63243 0.062060988596158495 WVLKKTPA 8 Unmodified _WVLKKTPA_ 0 0 0 L1PA10_dup5838|chr14:53113447-53117168:+|1.0224601099708013|0.1438746631003216|2.83|151.0|164|2|anti-sense L1PA10_dup5838|chr14:53113447-53117168:+|1.0224601099708013|0.1438746631003216|2.83|151.0|164|2|anti-sense L1PA10_dup5838|chr14:53113447-53117168:+|1.0224601099708013|0.1438746631003216|2.83|151.0|164|2|anti-sense MSMS UPN48_class_I_Rep_3 7 471.7939147949219 2 471.792195 941.569838 NaN NaN NaN NaN NaN NaN NaN 28.224 1 31.966 31.466 32.466 3.7424 0 0 0 0.40746 1 3810 3810 0.69038 0 1 54993 13610 34440 34458 63244 63244 0.0967155603646006 WVLKTLAR 8 Unmodified _WVLKTLAR_ 0 0 0 ENST00000395053.7_1_20:62701563-62701860:+|nuORF;ENST00000465111.5_1_20:62701563-62703530:+|nuORF ENST00000395053.7_1_20:62701563-62701860:+|nuORF ENST00000395053.7_1_20:62701563-62701860:+|nuORF MSMS UPN46_class_I_Rep_3 1 493.8094482421875 2 493.810919 985.607286 NaN NaN NaN NaN NaN NaN NaN 56.076 1 56.076 55.576 56.576 0 0 0 0 0.40404 1 12215 12215 5.2307 0 1 54994 6551 34441 34459 63245 63245 0.11390647302073376 WVLKTRSY 8 Unmodified _WVLKTRSY_ 0 0 0 L1MEh_dup1378|chr7:101843246-101843504:-|1.2491494932782736|0.0073204660527637|7.41|151.0|9|3|sense L1MEh_dup1378|chr7:101843246-101843504:-|1.2491494932782736|0.0073204660527637|7.41|151.0|9|3|sense L1MEh_dup1378|chr7:101843246-101843504:-|1.2491494932782736|0.0073204660527637|7.41|151.0|9|3|sense MSMS UPN47_class_I_Rep_2 3 526.36083984375 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 34.104 1 37.544 37.044 38.044 3.4398 0 0 0 0.40625 1 6126 6126 2.3027 0 1 54995 13441 34442 34460 63246 63246 0.05773753059793307 WVLLLCLA 8 Unmodified _WVLLLCLA_ 0 0 0 REV__ENSG00000131389.17,SLC6A6,chr3,+,I12.1,14468213,14472204|59|13.26|1|intron REV__ENSG00000131389.17,SLC6A6,chr3,+,I12.1,14468213,14472204|59|13.26|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 465.7777404785156 2 465.777699 929.540846 0.10304 4.7995E-05 -0.40662 -0.0001894 -0.30358 -0.0001414 465.7773347494823 73.268 0.49315 76.749 76.657 77.151 3.4812 72 46 2 0 0 0 0.82752 1 17308 17308 0.79363 0 1 131730 + 54996 18978 34443 34461 63247 63247 0.07325695415795508 WVLLLGRM 8 Unmodified _WVLLLGRM_ 0 0 0 ENST00000500695.2_1_12:69079778-69080563:-|nuORF ENST00000500695.2_1_12:69079778-69080563:-|nuORF ENST00000500695.2_1_12:69079778-69080563:-|nuORF MSMS UPN48_class_I_Rep_1 5 494.2945251464844 2 494.294048 986.573543 NaN NaN NaN NaN NaN NaN NaN 53.961 1 57.475 56.975 57.975 3.5143 0 0 0 0.40364 1 11378 11378 5.7604 0 1 54997 7128 34444 34462 63248 63248 0.07971902538679387 WVLLPCRH 8 Unmodified _WVLLPCRH_ 0 0 0 ENST00000556216.5_1_14:54997446-55005098:+|nuORF;ENSG00000100532|ENST00000216420|CGRRF1 ENST00000556216.5_1_14:54997446-55005098:+|nuORF ENST00000556216.5_1_14:54997446-55005098:+|nuORF MSMS UPN47_class_I_Rep_1 2 512.2822875976562 2 512.281472 1022.54839 NaN NaN NaN NaN NaN NaN NaN 27.711 1 31.477 30.977 31.977 3.7662 0 0 0 0.40746 1 4164 4164 0.69038 0.088878 1 54998 1513 34445 34463 63249 63249 0.03801847736099262 WVLLSFFF 8 Unmodified _WVLLSFFF_ 0 0 0 REV__L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|183|3|anti-sense REV__L1PA7_dup11632|chr15:51509215-51512196:+|2.128144153936852|0.0621275637016827|5.1|151.0|183|3|anti-sense MSMS UPN47_class_I_Rep_2 3 529.8081665039062 2 529.789121 1057.56369 NaN NaN NaN NaN NaN NaN NaN 69.408 1 72.685 72.185 73.185 3.2761 0 0 0 0.40581 1 16854 16854 2.8892 0 1 + 54999 24845 34446 34464 63250 63250 0.03721037804939442 WVLLVLRAPV 10 Unmodified _WVLLVLRAPV_ 0 0 0 REV__MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|31|1|anti-sense REV__MER52A_dup904|chr10:74206836-74208406:-|1.911626754561316|0.0968840205316953|4.3|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 583.3770751953125 2 583.376426 1164.7383 NaN NaN NaN NaN NaN NaN NaN 41.302 1 44.973 44.473 45.473 3.6719 0 0 0 0.53105 1 8279 8279 1.6526 0.32309 1 + 55000 31425 34447 34465 63251 63251 0.16252037950107479 WVLNRLPK 8 Unmodified _WVLNRLPK_ 0 0 0 REV__L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|25|3|sense REV__L1MDa_dup2736|chr7:45041289-45041994:+|3.704707594964528|0.1060262260534634|5.13|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 513.3170776367188 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 41.65 1 45.401 44.901 45.901 3.7508 0 0 0 0.40604 1 7627 7627 2.5775 0.27475 1 + 55001 27512 34448 34466 63252 63252 0.10686049676360199 WVLPIKEF 8 Unmodified _WVLPIKEF_ 0 0 0 REV__L1MB2_dup1384|chr3:44606439-44608585:+|1.3414483434646045|0.0354075197684562|5.24|151.0|107|1|anti-sense REV__L1MB2_dup1384|chr3:44606439-44608585:+|1.3414483434646045|0.0354075197684562|5.24|151.0|107|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.283203125 2 516.299853 1030.58515 0.42869 0.00022133 -1.0965 -0.0005661 -0.66777 -0.00034477 516.2993581320072 59.272 0.58805 62.759 62.464 63.052 3.4868 61 39 2 0 0 0 0.82752 1 13078 13078 5.7604 0 1 181770 + 55002 25699 34449 34467 63253 63253 0.07108422833653094 WVLPLIIV 8 Unmodified _WVLPLIIV_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MSMS UPN47_class_I_Rep_3 4 476.8146667480469 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 23.564 1 26.914 26.414 27.414 3.3509 0 0 0 0.40798 1 3018 3018 0 0 1 55003 1069 34450 34468 63254 63254 0.1379820121871944 WVLPLIIV 8 Unmodified _WVLPLIIV_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MSMS UPN48_class_I_Rep_1 5 476.8147888183594 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 23.086 1 26.646 26.146 27.146 3.5605 0 0 0 0.40798 1 2352 2352 0 0 1 55004 1069 34450 34468 63255 63255 0.1379820121871944 WVLPLIIV 8 Unmodified _WVLPLIIV_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MSMS UPN48_class_I_Rep_1 5 476.7742919921875 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 27.207 1 30.77 30.27 31.27 3.5629 0 0 0 0.40798 1 3468 3468 0 0 1 55005 1069 34450 34468 63256 63256 0.1379820121871944 WVLPLIIV 8 Unmodified _WVLPLIIV_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MSMS UPN48_class_I_Rep_1 5 476.8670654296875 2 476.815139 951.615725 NaN NaN NaN NaN NaN NaN NaN 37.451 1 40.956 40.456 41.456 3.5052 0 0 0 0.40798 1 6371 6371 0 0 1 55006 1069 34450 34468 63257 63257 0.1379820121871944 WVLPVPYL 8 Unmodified _WVLPVPYL_ 0 0 0 REV__L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|82|1|anti-sense REV__L1MA2_dup50|chr1:42303908-42306004:+|4.702874950327177|0.0530404697684751|6.47|151.0|82|1|anti-sense MSMS UPN46_class_I_Rep_3 1 493.7900695800781 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 81.702 1 81.702 81.202 82.202 0 0 0 0 0.40738 1 19310 19310 0.79363 0 1 + 55007 24881 34451 34469 63258 63258 0.07033037804944797 WVLRRFHVV 9 Unmodified _WVLRRFHVV_ 0 0 0 ENST00000526852.5_1_11:10879166-10879364:-|nuORF ENST00000526852.5_1_11:10879166-10879364:-|nuORF ENST00000526852.5_1_11:10879166-10879364:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 606.3610229492188 2 606.361642 1210.70873 0.5293 0.00032094 -0.15832 -9.6002E-05 0.37097 0.00022494 606.3610154830056 108.65 0.44345 112.28 112.17 112.62 3.6355 146 45 4 0 0 0 0.50582 1 26844 26844 0 0 1 73343000 55008 7264 34452 34470 63259 63259 0.11180518724631838 WVLVKPVGP 9 Unmodified _WVLVKPVGP_ 0 0 0 REV__ENSG00000179403|ENST00000476993|VWA1 REV__ENSG00000179403|ENST00000476993|VWA1 MSMS UPN47_class_I_Rep_3 4 497.80914306640625 2 497.807845 993.601138 NaN NaN NaN NaN NaN NaN NaN 17.833 1 21.191 20.691 21.691 3.3581 0 0 0 0.4007 1 1375 1375 0.52476 0.52476 1 + 55009 20677 34453 34471 63260 63260 0.1040812907056079 WVLYDISV 8 Unmodified _WVLYDISV_ 0 0 0 REV__MER77B_dup802|chr11:73092809-73093462:+|2.471559172024268|0.0071490536764662|8.43|151.0|30|1|anti-sense REV__MER77B_dup802|chr11:73092809-73093462:+|2.471559172024268|0.0071490536764662|8.43|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.7650451660156 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 71.546 1 75.012 74.512 75.512 3.466 0 0 0 0.40746 1 16734 16734 0.69038 0 1 + 55010 31564 34454 34472 63261 63261 0.020115531829901556 WVMDLRHR 8 Unmodified _WVMDLRHR_ 0 0 0 REV__ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|21|intron REV__ENSG00000123636.18,BAZ2B,chr2,-,I37.1,159337773,159347485|54|12.75|21|intron MSMS UPN48_class_I_Rep_3 7 556.7910766601562 2 556.792735 1111.57092 NaN NaN NaN NaN NaN NaN NaN 29.149 1 32.878 32.378 33.378 3.7286 0 0 0 0.40738 1 4054 4054 0.79363 0 1 + 55011 18788 34455 34473 63262 63262 0.01959447133708636 WVMEWFHG 8 Unmodified _WVMEWFHG_ 0 0 0 REV__ENSG00000196396|ENST00000371621|PTPN1 REV__ENSG00000196396|ENST00000371621|PTPN1 MSMS UPN48_class_I_Rep_1 5 546.2425537109375 2 546.242012 1090.46947 NaN NaN NaN NaN NaN NaN NaN 115.05 1 118.68 118.18 119.18 3.6298 0 0 0 0.40738 1 27983 27983 0.79363 0 1 + 55012 21036 34456 34474 63263 63263 -0.07214424288827104 WVMKRAVK 8 Unmodified _WVMKRAVK_ 0 0 0 REV__HERVIP10FH-int_dup38|chr2:65044777-65046931:-|2.934578858895782|0.0756933018184795|5.28|151.0|24|1|sense REV__HERVIP10FH-int_dup38|chr2:65044777-65046931:-|2.934578858895782|0.0756933018184795|5.28|151.0|24|1|sense MSMS UPN48_class_I_Rep_3 7 509.3062744140625 2 509.304947 1016.59534 NaN NaN NaN NaN NaN NaN NaN 83.765 1 87.493 86.993 87.993 3.7281 0 0 0 0.40581 1 19866 19866 2.8892 0.82947 1 + 55013 23775 34457 34475 63264 63264 0.08770707287249024 WVMNVKHL 8 Unmodified _WVMNVKHL_ 0 0 0 REV__ENST00000540898.1_1_6:108977550-108977589:+|nuORF REV__ENST00000540898.1_1_6:108977550-108977589:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.7802734375 2 513.781305 1025.54806 NaN NaN NaN NaN NaN NaN NaN 34.308 1 37.748 37.248 38.248 3.4398 0 0 0 0.40604 1 6189 6189 2.5775 0.27475 1 + 55014 22915 34458 34476 63265 63265 0.036304280162539726 WVNEDGGVF 9 Unmodified _WVNEDGGVF_ 0 0 0 REV__L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|123|3|sense REV__L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|123|3|sense MSMS UPN48_class_I_Rep_3 7 511.7473449707031 2 511.732532 1021.45051 NaN NaN NaN NaN NaN NaN NaN 116.46 1 120.09 119.59 120.59 3.6312 0 0 0 0.39428 1 27717 27717 2.0598 0.21551 1 + 55015 26083 34459 34477 63266 63266 -0.05935682378890306 WVPARRQG 8 Unmodified _WVPARRQG_ 0 0 0 REV__ENST00000394018.6_1_7:99775526-99778160:+|nuORF REV__ENST00000394018.6_1_7:99775526-99778160:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.2740783691406 2 485.272493 968.530432 NaN NaN NaN NaN NaN NaN NaN 34.415 1 38.089 37.589 38.589 3.6735 0 0 0 0.40746 1 5544 5544 0.69038 0 1 + 55016 22101 34460 34478 63267 63267 0.04490848805608039 WVPLLAPL 8 Unmodified _WVPLLAPL_ 0 0 0 L1MEf_dup738|chr1:229317760-229318558:-|1.2531448296071406|0.0889921977535452|3.82|151.0|45|2|anti-sense L1MEf_dup738|chr1:229317760-229318558:-|1.2531448296071406|0.0889921977535452|3.82|151.0|45|2|anti-sense L1MEf_dup738|chr1:229317760-229318558:-|1.2531448296071406|0.0889921977535452|3.82|151.0|45|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 455.23858642578125 2 454.783839 907.553125 0.11168 5.079E-05 1.5147 0.00068887 1.6264 0.00073966 454.7857839891777 57.05 0.10326 57.05 56.986 57.089 0 14 11 2 0 0 0 0.72333 1 12476 12476 0.79363 0 1 56722 55017 13317 34461 34479 63268 63268 0.09565055150505941 WVPLWLLRY 9 Unmodified _WVPLWLLRY_ 0 0 0 nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM nc|ENSG00000023909|P48507-2|GCLM nc|ENSG00000023909|P48507-2|GCLM MSMS UPN46_class_I_Rep_3 1 623.3634643554688 2 623.360776 1244.707 NaN NaN NaN NaN NaN NaN NaN 25.826 1 25.826 25.326 26.326 0 0 0 0 0.40038 1 3600 3600 0.6015 0.076735 1 55018 817 34462 34480 63269 63269 0.09443464916034827 WVPMSLGGKL 10 Unmodified _WVPMSLGGKL_ 0 0 0 ENSG00000119778.15,ATAD2B,chr2,-,I15.1,23834079,23856008|47|7.21|1|intron;MER52A_dup99|chr2:23835971-23837653:-|3.0736942178539004|0.0601017878688715|5.68|151.0|20|3|sense ENSG00000119778.15,ATAD2B,chr2,-,I15.1,23834079,23856008|47|7.21|1|intron ENSG00000119778.15,ATAD2B,chr2,-,I15.1,23834079,23856008|47|7.21|1|intron MSMS UPN47_class_I_Rep_1 2 544.7623291015625 2 544.30207 1086.58959 NaN NaN NaN NaN NaN NaN NaN 30.023 1 33.768 33.268 34.268 3.7449 0 0 0 0.53105 1 4851 4851 1.6526 0.32309 1 55019 2296 34463 34481 63270 63270 0.04975563984908149 WVPPKDKR 8 Unmodified _WVPPKDKR_ 0 0 0 ENST00000544935.5_1_7:588918-589143:-|nuORF ENST00000544935.5_1_7:588918-589143:-|nuORF ENST00000544935.5_1_7:588918-589143:-|nuORF MSMS UPN46_class_I_Rep_3 1 513.2976684570312 2 513.298176 1024.5818 NaN NaN NaN NaN NaN NaN NaN 90.198 1 90.198 89.698 90.698 0 0 0 0 0.40738 1 21742 21742 0.79363 0 1 55020 7372 34464 34482 63271 63271 0.07049172779647961 WVPPLAQRS 9 Unmodified _WVPPLAQRS_ 0 0 0 L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|297|2|anti-sense L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|297|2|anti-sense L1PA5_dup2975|chr4:105729744-105735830:-|1.1439996989374126|0.2277974199111494|2.33|150.0|297|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 526.822021484375 2 527.295633 1052.57671 0.28464 0.00015009 3.0816 0.0016249 3.3662 0.001775 527.2988820839425 48.91 0.067989 48.91 48.878 48.946 0 5 4 2 0 0 0 0.48414 1 10235 10235 2.3027 0 1 76392 55021 14456 34465 34483 63272 63272 0.052528689170458165 WVPPYLLI 8 Unmodified _WVPPYLLI_ 0 0 0 ENST00000560219.2_1_15:90321464-90321809:+|nuORF ENST00000560219.2_1_15:90321464-90321809:+|nuORF ENST00000560219.2_1_15:90321464-90321809:+|nuORF MSMS UPN48_class_I_Rep_2 6 500.798828125 2 500.796946 999.57934 NaN NaN NaN NaN NaN NaN NaN 27.898 1 31.529 31.029 32.029 3.6311 0 0 0 0.40738 1 3766 3766 0.79363 0 1 55022 7454 34466 34484 63273 63273 0.07953324321988475 WVPSSKSVP 9 Unmodified _WVPSSKSVP_ 0 0 0 REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|24|1|sense REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|24|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 493.76861572265625 2 493.768917 985.523281 0.20359 0.00010053 -0.24012 -0.00011856 -0.036526 -1.8035E-05 493.76874933134764 54.258 0.31456 57.773 57.61 57.925 3.5143 32 21 2 0 0 0 0.35081 1 11465 11465 10.824 1.4765 1 139460 + 55023 23608 34467 34485 63274 63274 0.029940714145254788 WVPSSKSVP 9 Unmodified _WVPSSKSVP_ 0 0 0 REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|24|1|sense REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|24|1|sense MSMS UPN48_class_I_Rep_1 5 493.76904296875 2 493.768917 985.523281 NaN NaN NaN NaN NaN NaN NaN 54.031 1 57.546 57.046 58.046 3.5143 0 0 0 0.29868 1 11400 11400 10.824 1.4765 1 + 55024 23608 34467 34485 63275 63275 0.029940714145254788 WVPSSKSVP 9 Unmodified _WVPSSKSVP_ 0 0 0 REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|24|1|sense REV__HERV9-int_dup296|chr13:111189942-111198317:-|3.3656966484147994|0.1290916915149209|4.7|151.0|24|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 493.7687683105469 2 493.768917 985.523281 0.36281 0.00017914 -0.2598 -0.00012828 0.10301 5.0863E-05 493.7687066325349 54.2 0.40728 57.782 57.489 57.896 3.5817 40 24 2 0 0 0 0.26948 1 11369 11369 15.847 1.2655 1 97580 + 55025 23608 34467 34485 63276 63276 0.029940714145254788 WVPVEYEE 8 Unmodified _WVPVEYEE_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS UPN47_class_I_Rep_3 4 525.8128051757812 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 34.188 1 37.462 36.962 37.962 3.2748 0 0 0 0.40738 1 6186 6186 0.79363 0.10326 1 55026 4803 34468 34486 63277 63277 -0.05217931438960477 WVPVPLHP 8 Unmodified _WVPVPLHP_ 0 0 0 L1MB7_dup20994|chr19:937290-937696:-|1.023289558711494|0.0207861872021757|5.62|151.0|14|1|anti-sense L1MB7_dup20994|chr19:937290-937696:-|1.023289558711494|0.0207861872021757|5.62|151.0|14|1|anti-sense L1MB7_dup20994|chr19:937290-937696:-|1.023289558711494|0.0207861872021757|5.62|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_2 3 472.3385314941406 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 67.75 1 71.014 70.514 71.514 3.2636 0 0 0 0.40738 1 16356 16356 0.79363 0 1 55027 10788 34469 34487 63278 63278 0.053950003479371844 WVPWFYFK 8 Unmodified _WVPWFYFK_ 0 0 0 L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|83|2|anti-sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|83|2|anti-sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|83|2|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7994384765625 2 586.80002 1171.58549 NaN NaN NaN NaN NaN NaN NaN 115.37 1 119 118.5 119.5 3.6282 0 0 0 0.40738 1 28063 28063 0.79363 0.10326 1 55028 12924 34470 34488 63279 63279 0.006558425534876733 WVQHNNMAH 9 Unmodified _WVQHNNMAH_ 0 0 0 L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|80|2|sense L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|80|2|sense L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|80|2|sense MSMS UPN48_class_I_Rep_1 5 568.7588500976562 2 568.75635 1135.49815 NaN NaN NaN NaN NaN NaN NaN 29.899 1 33.441 32.941 33.941 3.542 0 0 0 0.38478 1 4223 4223 4.3292 0 1 55029 14340 34471 34489 63280 63280 -0.06418306659702466 WVQLRCLC 8 Unmodified _WVQLRCLC_ 0 0 0 REV__L1P1_dup1954|chrX:77843843-77847573:-|7.528551565648538|0.2631352934120742|4.84|151.0|6|1|sense REV__L1P1_dup1954|chrX:77843843-77847573:-|7.528551565648538|0.2631352934120742|4.84|151.0|6|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.75836181640625 2 510.759515 1019.50448 0.19481 9.9502E-05 -0.47097 -0.00024055 -0.27616 -0.00014105 510.7590262971982 51.672 0.56525 55.006 54.627 55.193 3.3332 40 27 2 0 0 0 0.82752 1 11407 11407 2.3027 0 1 81364 + 55030 28826 34472 34490 63281 63281 -0.00449504752532448 WVRGRIYV 8 Unmodified _WVRGRIYV_ 0 0 0 REV__MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|51|3|anti-sense REV__MER54B_dup79|chr4:48197704-48198507:+|1.2970684161748616|0.0119187994378739|6.77|151.0|51|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 524.8041381835938 2 524.806168 1047.59778 0.2895 0.00015193 -3.8948 -0.002044 -3.6054 -0.0018921 524.8051725235176 61.469 0.46225 64.636 64.389 64.852 3.1667 38 34 2 0 0 0 0.82752 1 14502 14502 8.5933 1.304 1 76036 + 55031 31440 34473 34491 63282 63282 0.07588879016566352 WVRKRTGG 8 Unmodified _WVRKRTGG_ 0 0 0 REV__ENST00000331272.7_1_10:103454482-103454626:-|nuORF REV__ENST00000331272.7_1_10:103454482-103454626:-|nuORF MSMS UPN47_class_I_Rep_3 4 480.2799072265625 2 480.280318 958.546083 NaN NaN NaN NaN NaN NaN NaN 19.799 1 23.151 22.651 23.651 3.3514 0 0 0 0.40738 1 1920 1920 0.79363 0 1 + 55032 21780 34474 34492 63283 63283 0.0651513532267245 WVRPWQKL 8 Unmodified _WVRPWQKL_ 0 0 0 REV__ENST00000511154.5_1_19:54041514-54074864:+|nuORF REV__ENST00000511154.5_1_19:54041514-54074864:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 556.821044921875 2 556.821818 1111.62908 0.59571 0.0003317 -1.7723 -0.00098683 -1.1765 -0.00065513 557.3223667556952 64.015 0.35008 67.472 67.281 67.631 3.4578 28 22 2 0 0 0 0.72333 1 14445 14445 5.2307 1.6342 1 101490 + 55033 22738 34475 34493 63284 63284 0.07773452050651031 WVSWQQHI 8 Unmodified _WVSWQQHI_ 0 0 0 L1MA2_dup7207|chr19:36732162-36733490:+|2.248271942259185|0.2363107927981497|3.25|151.0|85|3|anti-sense L1MA2_dup7207|chr19:36732162-36733490:+|2.248271942259185|0.2363107927981497|3.25|151.0|85|3|anti-sense L1MA2_dup7207|chr19:36732162-36733490:+|2.248271942259185|0.2363107927981497|3.25|151.0|85|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 542.776123046875 2 542.272158 1082.52976 0.48289 0.00026186 -1.1348 -0.00061538 -0.65192 -0.00035352 542.2712360820489 66.329 0.48354 69.78 69.501 69.984 3.4516 51 31 2 0 0 0 0.72333 1 15092 15092 3.9444 1.0552 1 101500 55034 9450 34476 34494 63285 63285 -0.008199906340905727 WVSWQQHI 8 Unmodified _WVSWQQHI_ 0 0 0 L1MA2_dup7207|chr19:36732162-36733490:+|2.248271942259185|0.2363107927981497|3.25|151.0|85|3|anti-sense L1MA2_dup7207|chr19:36732162-36733490:+|2.248271942259185|0.2363107927981497|3.25|151.0|85|3|anti-sense L1MA2_dup7207|chr19:36732162-36733490:+|2.248271942259185|0.2363107927981497|3.25|151.0|85|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 542.272158 1082.52976 0.56073 0.00030407 -0.9826 -0.00053284 -0.42188 -0.00022877 542.271197795867 66.001 0.59653 69.508 69.286 69.883 3.5077 -0.13115 0.00021048 NaN 3.9444 68 44 2 NaN NaN NaN NaN 0 NaN NaN 0 115280 55035 9450 34476 34494 -0.008199906340905727 WVTEQNFVS 9 Unmodified _WVTEQNFVS_ 0 0 0 AluSg4_dup5678|chr16:29496686-29496994:-|1.112108091038304|0.0475547773034963|4.55|144.0|7|2|sense AluSg4_dup5678|chr16:29496686-29496994:-|1.112108091038304|0.0475547773034963|4.55|144.0|7|2|sense AluSg4_dup5678|chr16:29496686-29496994:-|1.112108091038304|0.0475547773034963|4.55|144.0|7|2|sense MSMS UPN47_class_I_Rep_3 4 555.2640380859375 2 555.266739 1108.51892 NaN NaN NaN NaN NaN NaN NaN 20.211 1 23.563 23.063 24.063 3.3514 0 0 0 0.39598 1 2041 2041 1.6526 0.17072 1 55036 220 34477 34495 63286 63286 -0.030994377990509747 WVTRYIVN 8 Unmodified _WVTRYIVN_ 0 0 0 Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|149|3|anti-sense;Tigger1_dup10274|chr15:30840863-30842312:-|5.465369581788592|0.0097420156532368|9.13|151.0|66|2|anti-sense;Tigger1_dup5409|chr7:5341784-5342146:+|1.2495235951000685|0.0081524325544269|7.26|151.0|13|1|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|149|3|anti-sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|149|3|anti-sense MSMS UPN48_class_I_Rep_2 6 525.7899169921875 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 23.408 1 27.051 26.551 27.551 3.6432 0 0 0 0.40746 1 2549 2549 0.69038 0 1 55037 32974 34478 34496 63287 63287 0.04301466542756316 WVVAGYCD 8 Unmodified _WVVAGYCD_ 0 0 0 REV__nc|ENSG00000250878|A6NDL7|METTL21EP REV__nc|ENSG00000250878|A6NDL7|METTL21EP MSMS UPN46_class_I_Rep_3 1 456.7001953125 2 456.699646 911.384739 NaN NaN NaN NaN NaN NaN NaN 114.73 1 114.73 114.23 115.23 0 0 0 0 0.40738 1 28365 28365 0.79363 0 1 + 55038 32117 34479 34497 63288 63288 -0.07449794825458866 WVVAGYCD 8 Unmodified _WVVAGYCD_ 0 0 0 REV__nc|ENSG00000250878|A6NDL7|METTL21EP REV__nc|ENSG00000250878|A6NDL7|METTL21EP MSMS UPN46_class_I_Rep_3 1 456.289794921875 2 456.699646 911.384739 NaN NaN NaN NaN NaN NaN NaN 118.74 1 118.74 118.24 119.24 0 0 0 0 0.40738 1 29484 29484 0.79363 0 1 + 55039 32117 34479 34497 63289 63289 -0.07449794825458866 WVVAVRKL 8 Unmodified _WVVAVRKL_ 0 0 0 LTR23_dup311|chr6:24982749-24983187:+|1.0607043982883004|0.0288957816483048|5.2|150.0|11|3|sense LTR23_dup311|chr6:24982749-24983187:+|1.0607043982883004|0.0288957816483048|5.2|150.0|11|3|sense LTR23_dup311|chr6:24982749-24983187:+|1.0607043982883004|0.0288957816483048|5.2|150.0|11|3|sense MSMS UPN47_class_I_Rep_3 4 485.8114929199219 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 117.85 1 121.28 120.78 121.78 3.4238 0 0 0 0.40738 1 29047 29047 0.79363 0 1 55040 15602 34480 34498 63290 63290 0.12634951164693575 WVVFFVVVE 9 Unmodified _WVVFFVVVE_ 0 0 0 L1MB3_dup8579|chr9:95943531-95944543:+|1.0928243923756988|0.0671280692865703|4.03|150.0|78|3|anti-sense L1MB3_dup8579|chr9:95943531-95944543:+|1.0928243923756988|0.0671280692865703|4.03|150.0|78|3|anti-sense L1MB3_dup8579|chr9:95943531-95944543:+|1.0928243923756988|0.0671280692865703|4.03|150.0|78|3|anti-sense MSMS UPN48_class_I_Rep_1 5 562.31494140625 2 562.312961 1122.61137 NaN NaN NaN NaN NaN NaN NaN 56.675 1 60.177 59.677 60.677 3.5014 0 0 0 0.39326 1 12216 12216 2.3027 0.24298 1 55041 10465 34481 34499 63291 63291 0.054966920051583656 WVVFRLGH 8 Unmodified _WVVFRLGH_ 0 0 0 REV__LTR14B_dup316|chr16:20716266-20716874:+|1.8914598768792268|0.1176748438124029|4.01|147.0|37|3|anti-sense REV__LTR14B_dup316|chr16:20716266-20716874:+|1.8914598768792268|0.1176748438124029|4.01|147.0|37|3|anti-sense MSMS UPN46_class_I_Rep_3 1 507.286865234375 2 507.287611 1012.56067 NaN NaN NaN NaN NaN NaN NaN 80.75 1 80.75 80.25 81.25 0 0 0 0 0.40738 1 19036 19036 0.79363 0.10326 1 + 55042 30846 34482 34500 63292 63292 0.054892074707936445 WVVLGEPVP 9 Unmodified _WVVLGEPVP_ 0 0 0 REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|4|1|sense REV__L1PA10_dup242|chr1:160511705-160518027:+|1.3751843417128908|0.0490615077175958|4.81|149.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 498.2820739746094 2 498.28166 994.548768 NaN NaN NaN NaN NaN NaN NaN 29.968 1 33.291 32.791 33.791 3.3235 0 0 0 0.39428 1 4911 4911 2.0598 0 1 + 55043 28949 34483 34501 63293 63293 0.05127545936943534 WVVLGLRK 8 Unmodified _WVVLGLRK_ 0 0 0 L1MC4a_dup9417|chr19:3165476-3165839:-|1.313377950834476|0.0225118679036104|5.87|151.0|6|2|sense L1MC4a_dup9417|chr19:3165476-3165839:-|1.313377950834476|0.0225118679036104|5.87|151.0|6|2|sense L1MC4a_dup9417|chr19:3165476-3165839:-|1.313377950834476|0.0225118679036104|5.87|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 485.81170654296875 2 485.813462 969.612371 0.18925 9.1942E-05 -2.6041 -0.0012651 -2.4148 -0.0011732 485.8116627195446 68.838 0.28912 72.108 72.077 72.366 3.2696 32 23 2 0 0 0 0.82752 1 16713 16713 0.79363 0 1 298490 55044 11634 34484 34502 63294 63294 0.12634951164693575 WVVLGLRK 8 Unmodified _WVVLGLRK_ 0 0 0 L1MC4a_dup9417|chr19:3165476-3165839:-|1.313377950834476|0.0225118679036104|5.87|151.0|6|2|sense L1MC4a_dup9417|chr19:3165476-3165839:-|1.313377950834476|0.0225118679036104|5.87|151.0|6|2|sense L1MC4a_dup9417|chr19:3165476-3165839:-|1.313377950834476|0.0225118679036104|5.87|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 485.8116149902344 2 485.813462 969.612371 NaN NaN NaN NaN NaN NaN NaN 68.874 1 72.072 71.572 72.572 3.1977 0 0 0 0.40738 1 16762 16762 0.79363 0 1 55045 11634 34484 34502 63295 63295 0.12634951164693575 WVVPNNQGI 9 Unmodified _WVVPNNQGI_ 0 0 0 ENST00000560833.1_1_15:77236155-77240950:+|nuORF;ENSG00000117906|ENST00000394885|RCN2;nc|ENSG00000117906|Q14257-2|RCN2 ENST00000560833.1_1_15:77236155-77240950:+|nuORF ENST00000560833.1_1_15:77236155-77240950:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.318359375 2 513.771991 1025.52943 NaN NaN NaN NaN NaN NaN NaN 41.099 1 44.464 43.964 44.964 3.3655 0 0 0 0.39428 1 8248 8248 2.0598 0 1 55046 2236 34485 34503 63296 63296 0.017685896460534423 WVVRVRKN 8 Unmodified _WVVRVRKN_ 0 0 0 REV__ENSG00000214097|ENST00000397537|SMCO1 REV__ENSG00000214097|ENST00000397537|SMCO1 MSMS UPN47_class_I_Rep_3 4 528.8259887695312 2 528.824892 1055.63523 NaN NaN NaN NaN NaN NaN NaN 98.13 1 101.55 101.05 102.05 3.4216 0 0 0 0.40746 1 24305 24305 0.69038 0 1 + 55047 21257 34486 34504 63297 63297 0.10963970282182345 WVVVLFGF 8 Unmodified _WVVVLFGF_ 0 0 0 REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|199|3|anti-sense REV__L1PA7_dup406|chr1:107844025-107848032:+|2.6072996430881243|0.0172818008037455|7.24|151.0|199|3|anti-sense MSMS UPN47_class_I_Rep_1 2 483.7788391113281 2 483.776014 965.537475 NaN NaN NaN NaN NaN NaN NaN 114.34 1 117.92 117.42 118.42 3.5809 0 0 0 0.40738 1 28251 28251 0.79363 0 1 + 55048 30087 34487 34505 63298 63298 0.053327686334796454 WVVWFLVK 8 Unmodified _WVVWFLVK_ 0 0 0 L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|74|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|74|3|anti-sense L1MB2_dup795|chr2:62930276-62931541:+|1.440773504621687|0.10153964675021|3.83|150.0|74|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 538.3170166015625 2 538.818213 1075.62187 0.51994 0.00028016 0.13713 7.3887E-05 0.65707 0.00035404 538.818298559386 61.845 0.3556 65.319 65.211 65.566 3.4738 38 27 2 0 0 0 0.72333 1 13764 13764 0.79363 0.79363 1 253650 55049 10292 34488 34506 63299 63299 0.08708719450237368 WVWALWPK 8 Unmodified _WVWALWPK_ 0 0 0 REV__ENST00000265187.4_1_20:5935850-5937778:+|nuORF REV__ENST00000265187.4_1_20:5935850-5937778:+|nuORF MSMS UPN48_class_I_Rep_3 7 543.298095703125 2 543.300188 1084.58582 NaN NaN NaN NaN NaN NaN NaN 27.204 1 30.96 30.46 31.46 3.7555 0 0 0 0.40738 1 3541 3541 0.79363 0.10326 1 + 55050 21590 34489 34507 63300 63300 0.04691262273331631 WVWCNRHL 8 Unmodified _WVWCNRHL_ 0 0 0 MER57D_dup118|chr4:153687475-153687915:+|1.5288366921207115|0.1110136601326708|3.78|149.0|38|3|anti-sense MER57D_dup118|chr4:153687475-153687915:+|1.5288366921207115|0.1110136601326708|3.78|149.0|38|3|anti-sense MER57D_dup118|chr4:153687475-153687915:+|1.5288366921207115|0.1110136601326708|3.78|149.0|38|3|anti-sense MSMS UPN48_class_I_Rep_2 6 557.2739868164062 2 557.274178 1112.5338 NaN NaN NaN NaN NaN NaN NaN 29.878 1 33.509 33.009 34.009 3.6316 0 0 0 0.40738 1 4301 4301 0.79363 0 1 55051 16130 34490 34508 63301 63301 -0.017962244120553805 WVWGQWQC 8 Unmodified _WVWGQWQC_ 0 0 0 REV__L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|125|3|anti-sense REV__L1PREC2_dup573|chr2:24103955-24106313:+|2.577755449290225|0.2566402441070108|3.33|151.0|125|3|anti-sense MSMS UPN47_class_I_Rep_1 2 546.7398071289062 2 546.739637 1091.46472 NaN NaN NaN NaN NaN NaN NaN 26.224 1 29.987 29.487 30.487 3.7624 0 0 0 0.40738 1 3721 3721 0.79363 0 1 + 55052 30728 34491 34509 63302 63302 -0.07735308431597332 WVWWHKPV 8 Unmodified _WVWWHKPV_ 0 0 0 AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|8|2|sense;AluJo_dup34457|chr8:100706317-100706585:-|1.032457561961166|0.1655056843465143|2.64|151.0|5|2|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|8|2|sense AluSz6_dup25371|chrX:74261497-74261800:+|1.6212009080613066|0.0343347689443959|5.56|150.0|8|2|sense MSMS UPN47_class_I_Rep_1 2 569.3051147460938 2 569.303262 1136.59197 NaN NaN NaN NaN NaN NaN NaN 31.498 1 35.227 34.727 35.727 3.7293 0 0 0 0.40746 1 5293 5293 0.69038 0 1 55053 105 34492 34510 63303 63303 0.029137805048549126 WVWWYAHV 8 Unmodified _WVWWYAHV_ 0 0 0 AluSx3_dup31505|chr21:34863551-34863815:-|3.637340861006745|0.0419993273085992|6.44|151.0|2|1|sense AluSx3_dup31505|chr21:34863551-34863815:-|3.637340861006745|0.0419993273085992|6.44|151.0|2|1|sense AluSx3_dup31505|chr21:34863551-34863815:-|3.637340861006745|0.0419993273085992|6.44|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 573.779541015625 2 573.779619 1145.54469 NaN NaN NaN NaN NaN NaN NaN 77.344 1 80.613 80.113 81.113 3.269 0 0 0 0.40738 1 19256 19256 0.79363 0 1 55054 334 34493 34511 63304 63304 -0.02226498766117402 WVWYALAF 8 Unmodified _WVWYALAF_ 0 0 0 L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|167|3|anti-sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|167|3|anti-sense L1MA2_dup6586|chr15:51527740-51530470:+|1.286554165718469|0.0116182526124771|6.79|151.0|167|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.2709350585938 2 528.271096 1054.52764 0.25026 0.00013221 -0.8871 -0.00046863 -0.63684 -0.00033643 528.270538732745 55.289 0.87675 58.599 58.387 59.264 3.3102 80 51 2 0 0 0 0.82752 1 12551 12551 6.3541 0 1 134650 55055 9432 34494 34512 63305 63305 0.002555806280724937 WVYMFLRY 8 Unmodified _WVYMFLRY_ 0 0 0 L1MB3_dup4202|chr4:82836402-82837069:+|2.5798590199920497|0.4363117220004315|2.56|151.0|28|1|anti-sense L1MB3_dup4202|chr4:82836402-82837069:+|2.5798590199920497|0.4363117220004315|2.56|151.0|28|1|anti-sense L1MB3_dup4202|chr4:82836402-82837069:+|2.5798590199920497|0.4363117220004315|2.56|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_1 5 589.2953491210938 2 589.296788 1176.57902 NaN NaN NaN NaN NaN NaN NaN 29.383 1 32.933 32.433 33.433 3.5499 0 0 0 0.40738 1 4076 4076 0.79363 0 1 55056 10428 34495 34513 63306 63306 -0.002204186695280441 WVYMFLRY 8 Unmodified _WVYMFLRY_ 0 0 0 L1MB3_dup4202|chr4:82836402-82837069:+|2.5798590199920497|0.4363117220004315|2.56|151.0|28|1|anti-sense L1MB3_dup4202|chr4:82836402-82837069:+|2.5798590199920497|0.4363117220004315|2.56|151.0|28|1|anti-sense L1MB3_dup4202|chr4:82836402-82837069:+|2.5798590199920497|0.4363117220004315|2.56|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_3 7 589.2976684570312 2 589.296788 1176.57902 NaN NaN NaN NaN NaN NaN NaN 35.913 1 39.58 39.08 40.08 3.6667 0 0 0 0.40738 1 5881 5881 0.79363 0 1 55057 10428 34495 34513 63307 63307 -0.002204186695280441 WVYYMIEC 8 Unmodified _WVYYMIEC_ 0 0 0 REV__Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|65|1|anti-sense REV__Tigger2_dup1056|chr5:179985040-179986840:-|14.253647426542283|0.3153895043909812|5.5|151.0|65|1|anti-sense MSMS UPN46_class_I_Rep_3 1 553.3027954101562 2 553.737914 1105.46127 NaN NaN NaN NaN NaN NaN NaN 113.38 1 113.38 112.88 113.88 0 0 0 0 0.40738 1 28007 28007 0.79363 0 1 + 55058 32620 34496 34514 63308 63308 -0.0872373932049868 WWAGLPKH 8 Unmodified _WWAGLPKH_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS UPN48_class_I_Rep_1 5 497.76568603515625 2 497.766512 993.518471 NaN NaN NaN NaN NaN NaN NaN 25.851 1 29.417 28.917 29.917 3.5667 0 0 0 0.40738 1 3076 3076 0.79363 0.10326 1 + 55059 20424 34497 34515 63309 63309 0.02145232062400737 WWAPPLLSAE 10 Unmodified _WWAPPLLSAE_ 0 0 0 REV__ENST00000417961.5_1_20:48508199-48508355:+|nuORF REV__ENST00000417961.5_1_20:48508199-48508355:+|nuORF MSMS UPN48_class_I_Rep_1 5 585.3029174804688 2 585.303124 1168.5917 NaN NaN NaN NaN NaN NaN NaN 72.903 1 76.376 75.876 76.876 3.4732 0 0 0 0.53105 1 17143 17143 1.8442 0.19162 1 + 55060 22229 34498 34516 63310 63310 0.014143159943841965 WWCHVLQF 8 Unmodified _WWCHVLQF_ 0 0 0 REV__L1PB_dup302|chr3:138641693-138642594:-|3.8607769190175296|0.0263430074186058|7.2|151.0|57|3|anti-sense REV__L1PB_dup302|chr3:138641693-138642594:-|3.8607769190175296|0.0263430074186058|7.2|151.0|57|3|anti-sense MSMS UPN47_class_I_Rep_1 2 559.7667846679688 2 559.765655 1117.51676 NaN NaN NaN NaN NaN NaN NaN 78.007 1 81.436 80.936 81.936 3.4289 0 0 0 0.40746 1 19378 19378 0.69038 0 1 + 55061 30284 34499 34517 63311 63311 -0.03730145017857467 WWDAVCIEI 9 Unmodified _WWDAVCIEI_ 0 0 0 REV__ENSG00000269190|ENST00000292852|FBXO17 REV__ENSG00000269190|ENST00000292852|FBXO17 MSMS UPN47_class_I_Rep_1 2 567.77001953125 2 567.76806 1133.52157 NaN NaN NaN NaN NaN NaN NaN 49.003 1 52.662 52.162 53.162 3.6592 0 0 0 0.39428 1 10623 10623 2.0598 0.40713 1 + 55062 21417 34500 34518 63312 63312 -0.03985305665764827 WWEGGRCPK 9 Unmodified _WWEGGRCPK_ 0 0 0 ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5 ENST00000454993.6_1_19:42503025-42546997:-|nuORF ENST00000454993.6_1_19:42503025-42546997:-|nuORF MSMS UPN47_class_I_Rep_2 3 559.7638549804688 2 559.763643 1117.51273 NaN NaN NaN NaN NaN NaN NaN 19.876 1 23.273 22.773 23.773 3.3963 0 0 0 0.39428 1 1960 1960 2.0598 0 1 55063 1756 34501 34519 63313 63313 -0.04132234511575916 WWERRDRRFRS 11 Unmodified _WWERRDRRFRS_ 0 0 0 ENST00000530167.1_1_11:118964940-118965138:-|nuORF ENST00000530167.1_1_11:118964940-118965138:-|nuORF ENST00000530167.1_1_11:118964940-118965138:-|nuORF MSMS UPN46_class_I_Rep_3 1 550.6234130859375 3 550.622185 1648.84472 NaN NaN NaN NaN NaN NaN NaN 50.879 1 50.879 50.379 51.379 0 0 0 0 0.38417 1 10775 10775 0.094841 0 1 55064 7290 34502 34520 63314 63314 0.046255614973233605 WWESSARPAS 10 Unmodified _WWESSARPAS_ 0 0 0 REV__ENST00000586409.5_1_17:74396618-74397180:-|nuORF REV__ENST00000586409.5_1_17:74396618-74397180:-|nuORF MSMS UPN48_class_I_Rep_2 6 588.7767944335938 2 588.775262 1175.53597 NaN NaN NaN NaN NaN NaN NaN 40.625 1 44.366 43.866 44.866 3.7413 0 0 0 0.53105 1 7332 7332 2.9952 0.41776 1 + 55065 23147 34503 34521 63315 63315 -0.04477517193231506 WWEVCIML 8 Unmodified _WWEVCIML_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-2|SLC47A2 MSMS UPN46_class_I_Rep_3 1 540.2564697265625 2 540.256274 1078.49799 NaN NaN NaN NaN NaN NaN NaN 77.742 1 77.742 77.242 78.242 0 0 0 0 0.40738 1 18185 18185 0.79363 0 1 + 55066 20708 34504 34522 63316 63316 -0.03811442703931789 WWFAARVI 8 Unmodified _WWFAARVI_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|328|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|328|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|328|3|anti-sense MSMS UPN47_class_I_Rep_1 2 524.7888793945312 2 524.789987 1047.56542 NaN NaN NaN NaN NaN NaN NaN 45.726 1 49.426 48.926 49.926 3.6999 0 0 0 0.40581 1 9632 9632 2.8892 0.58649 1 55067 13658 34505 34523 63317 63317 0.043540916135498264 WWFAARVI 8 Unmodified _WWFAARVI_ 0 0 0 L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|328|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|328|3|anti-sense L1PA11_dup2456|chrX:79379706-79386245:+|6.021555126827054|0.0591558760245821|6.67|151.0|328|3|anti-sense MSMS UPN47_class_I_Rep_2 3 524.7883911132812 2 524.789987 1047.56542 NaN NaN NaN NaN NaN NaN NaN 46.136 1 49.49 48.99 49.99 3.3534 0 0 0 0.40581 1 9787 9787 2.8892 0.15402 1 55068 13658 34505 34523 63318 63318 0.043540916135498264 WWFCGIES 8 Unmodified _WWFCGIES_ 0 0 0 SVA_D_dup709|chr9:77761374-77763116:+|1.6296919285979432|0.0946266502911752|4.11|151.0|6|1|sense;SVA_D_dup60|chr1:86898787-86900637:-|2.238811659747259|0.3775951572340537|2.57|151.0|27|2|sense;SVA_D_dup1451|chr22:41630493-41632184:-|1.0283277804292374|0.1814998617035134|2.5|151.0|9|1|sense;SVA_D_dup1273|chr18:12873246-12875326:+|1.078564064518344|0.1444424703059115|2.9|151.0|25|2|sense SVA_D_dup709|chr9:77761374-77763116:+|1.6296919285979432|0.0946266502911752|4.11|151.0|6|1|sense SVA_D_dup709|chr9:77761374-77763116:+|1.6296919285979432|0.0946266502911752|4.11|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 514.2198486328125 2 514.220746 1026.42694 NaN NaN NaN NaN NaN NaN NaN 20.39 1 24.056 23.556 24.556 3.6667 0 0 0 0.40604 1 1725 1725 2.5775 0 1 55069 32852 34506 34524 63319 63319 -0.08521819417092047 WWFGIRRD 8 Unmodified _WWFGIRRD_ 0 0 0 ENSG00000226479|ENST00000426077|TMEM185B ENSG00000226479|ENST00000426077|TMEM185B ENSG00000226479|ENST00000426077|TMEM185B MSMS UPN48_class_I_Rep_2 6 568.2467041015625 2 568.293425 1134.5723 NaN NaN NaN NaN NaN NaN NaN 26.778 1 30.409 29.909 30.909 3.6311 0 0 0 0.40738 1 3457 3457 0.79363 0.10326 1 55070 5665 34507 34525 63320 63320 0.010394044941222091 WWFPHGVK 8 Unmodified _WWFPHGVK_ 0 0 0 MSTA-int_dup986|chr5:76854185-76855822:+|10.621901351066349|0.0099894548066637|10.05|151.0|25|2|sense MSTA-int_dup986|chr5:76854185-76855822:+|10.621901351066349|0.0099894548066637|10.05|151.0|25|2|sense MSTA-int_dup986|chr5:76854185-76855822:+|10.621901351066349|0.0099894548066637|10.05|151.0|25|2|sense MSMS UPN47_class_I_Rep_3 4 528.7747192382812 2 528.774337 1055.53412 NaN NaN NaN NaN NaN NaN NaN 114.36 1 117.86 117.36 118.36 3.4963 0 0 0 0.40738 1 28080 28080 0.79363 0 1 55071 16566 34508 34526 63321 63321 0.008575185794597928 WWFPPINP 8 Unmodified _WWFPPINP_ 0 0 0 AluJr_dup66320|chr16:11906349-11906658:+|1.5127646656355436|0.1741749967814715|3.12|151.0|1|1|sense AluJr_dup66320|chr16:11906349-11906658:+|1.5127646656355436|0.1741749967814715|3.12|151.0|1|1|sense AluJr_dup66320|chr16:11906349-11906658:+|1.5127646656355436|0.1741749967814715|3.12|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 528.7693481445312 2 528.76872 1055.52289 NaN NaN NaN NaN NaN NaN NaN 117.73 1 121.17 120.67 121.67 3.4425 0 0 0 0.40738 1 29016 29016 0.79363 0 1 55072 170 34509 34527 63322 63322 -0.002653035146977345 WWFVSYERP 9 Unmodified _WWFVSYERP_ 0 0 0 ENST00000469973.1_1_1:228329173-228329239:+|nuORF ENST00000469973.1_1_1:228329173-228329239:+|nuORF ENST00000469973.1_1_1:228329173-228329239:+|nuORF MSMS UPN47_class_I_Rep_1 2 635.305908203125 2 635.306198 1268.59784 NaN NaN NaN NaN NaN NaN NaN 45.375 1 49.075 48.575 49.575 3.6999 0 0 0 0.40038 1 9524 9524 0.6015 0.076735 1 55073 6918 34510 34528 63323 63323 -0.025711657741112504 WWGCKSVHP 9 Unmodified _WWGCKSVHP_ 0 0 0 L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|177|3|sense L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|177|3|sense L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|177|3|sense MSMS UPN46_class_I_Rep_3 1 550.2576904296875 2 550.260736 1098.50692 NaN NaN NaN NaN NaN NaN NaN 15.61 1 15.61 15.11 16.11 0 0 0 0 0.40038 1 925 925 0.6015 0 1 55074 9608 34511 34529 63324 63324 -0.038393330232338485 WWGHKYHR 8 Unmodified _WWGHKYHR_ 0 0 0 REV__L1MEd_dup19447|chr17:76427141-76427869:-|1.0298361206236557|0.0160153797717458|6.01|150.0|10|1|sense REV__L1MEd_dup19447|chr17:76427141-76427869:-|1.0298361206236557|0.0160153797717458|6.01|150.0|10|1|sense MSMS UPN48_class_I_Rep_2 6 585.2896728515625 2 585.291217 1168.56788 NaN NaN NaN NaN NaN NaN NaN 112.87 1 116.54 116.04 117.04 3.6648 0 0 0 0.40738 1 26910 26910 0.79363 0.10326 1 + 55075 28557 34512 34530 63325 63325 -0.009660599287826699 WWHASFGK 8 Unmodified _WWHASFGK_ 0 0 0 REV__ENST00000414624.6_1_11:61645294-61658904:-|nuORF REV__ENST00000414624.6_1_11:61645294-61658904:-|nuORF MSMS UPN47_class_I_Rep_2 3 509.7486877441406 2 509.748319 1017.48209 NaN NaN NaN NaN NaN NaN NaN 64.364 1 67.62 67.12 68.12 3.2556 0 0 0 0.40604 1 15328 15328 2.5775 0 1 + 55076 21283 34513 34531 63326 63326 -0.025956448342981275 WWHRWRLR 8 Unmodified _WWHRWRLR_ 0 0 0 REV__L1M4_dup3242|chr3:33547487-33547790:-|1.6229025981809966|0.2671321142257238|2.6|151.0|6|3|sense REV__L1M4_dup3242|chr3:33547487-33547790:-|1.6229025981809966|0.2671321142257238|2.6|151.0|6|3|sense MSMS UPN46_class_I_Rep_3 1 648.3565063476562 2 648.354683 1294.69481 NaN NaN NaN NaN NaN NaN NaN 88.481 1 88.481 87.981 88.981 0 0 0 0 0.40625 1 21250 21250 2.3027 0.24298 1 + 55077 24423 34514 34532 63327 63327 0.05925286016190512 WWIELQFF 8 Unmodified _WWIELQFF_ 0 0 0 L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|73|1|anti-sense L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|73|1|anti-sense L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|73|1|anti-sense MSMS UPN48_class_I_Rep_2 6 584.796630859375 2 584.794935 1167.57532 NaN NaN NaN NaN NaN NaN NaN 72.177 1 75.734 75.234 76.234 3.5571 0 0 0 0.40746 1 16877 16877 0.69038 0 1 55078 11709 34515 34533 63328 63328 -0.0017676517170457373 WWIFIKLYYK 10 Unmodified _WWIFIKLYYK_ 0 0 0 REV__L1MC5_dup2121|chr2:227525229-227526183:-|3.689740533931616|0.3775687604580789|3.29|151.0|58|2|anti-sense REV__L1MC5_dup2121|chr2:227525229-227526183:-|3.689740533931616|0.3775687604580789|3.29|151.0|58|2|anti-sense MSMS UPN47_class_I_Rep_1 2 487.27484130859375 3 487.27607 1458.80638 NaN NaN NaN NaN NaN NaN NaN 119.97 1 123.57 123.07 124.07 3.5977 0 0 0 0.53105 1 29834 29834 0.15932 0.064481 1 + 55079 27073 34516 34534 63329 63329 0.09532862810101506 WWILLILY 8 Unmodified _WWILLILY_ 0 0 0 REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|172|2|anti-sense REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|172|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.3171997070312 2 560.333696 1118.65284 0.47419 0.0002657 2.4159 0.0013537 2.8901 0.0016194 560.3350046854174 41.45 0.37266 44.956 44.663 45.036 3.506 37 29 2 0 0 0 0.82752 1 7498 7498 0.79363 0 1 90496 + 55080 27305 34517 34535 63330 63330 0.09825872764486121 WWISFLMY 8 Unmodified _WWISFLMY_ 0 0 0 L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|78|1|anti-sense;L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|311|3|anti-sense;L1PA7_dup2601|chr3:151528407-151534796:+|2.556689722210004|0.0396026575783543|6.01|139.0|280|2|anti-sense;L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|299|3|anti-sense;L1PA6_dup3492|chrX:13724627-13729626:+|3.6386982999803785|0.1628115357540107|4.48|151.0|155|1|anti-sense;L1PA5_dup8250|chr11:46992246-46996293:-|1.6213487201488672|0.0345204150819758|5.55|151.0|141|1|anti-sense;L1PA4_dup10839|chr16:47347060-47353218:+|2.7738216112340077|0.0714909495328153|5.28|150.0|212|1|anti-sense;L1PA10_dup835|chr2:177425650-177430807:-|1.17219142652428|0.0363143203486528|5.01|151.0|203|2|anti-sense;L1PA5_dup7720|chr10:45413041-45415587:+|1.2437035080795062|0.1925483823378521|2.69|151.0|104|1|anti-sense;L1P2_dup1349|chr14:30663955-30669057:+|4.4451201644472205|0.4642598085667838|3.26|151.0|274|3|anti-sense;L1PA6_dup938|chr3:3937363-3942013:-|1.2084132415237645|0.0369796068903739|5.03|151.0|192|2|anti-sense L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|78|1|anti-sense L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|78|1|anti-sense MSMS UPN47_class_I_Rep_2 3 573.2774047851562 2 573.278063 1144.54157 NaN NaN NaN NaN NaN NaN NaN 17.525 1 20.912 20.412 21.412 3.387 0 0 0 0.40738 1 1325 1325 0.79363 0 1 55081 13483 34518 34536 63331 63331 -0.024915099351346726 WWKNYKSW 8 Unmodified _WWKNYKSW_ 0 0 0 REV__L1MCa_dup7052|chr19:19719066-19720341:+|1.8446682598012327|0.0584335906560119|4.98|151.0|45|3|sense REV__L1MCa_dup7052|chr19:19719066-19720341:+|1.8446682598012327|0.0584335906560119|4.98|151.0|45|3|sense MSMS UPN48_class_I_Rep_2 6 599.2960815429688 2 599.295633 1196.57671 NaN NaN NaN NaN NaN NaN NaN 31.558 1 35.199 34.699 35.699 3.641 0 0 0 0.40625 1 4763 4763 2.3027 0 1 + 55082 27225 34519 34537 63332 63332 -0.013711310829876311 WWKVPLAG 8 Unmodified _WWKVPLAG_ 0 0 0 ENST00000461182.1_1_1:151734815-151735610:-|nuORF;ENST00000462783.1_1_1:151735406-151735955:-|nuORF;MRPL9|p.W182Gfs*3|1|0.07|ENSG00000143436|chr1:151761495-151761495|A/-|frameshift_variant;ENSG00000143436|ENST00000368830|MRPL9 ENST00000461182.1_1_1:151734815-151735610:-|nuORF ENST00000461182.1_1_1:151734815-151735610:-|nuORF MSMS UPN46_class_I_Rep_3 1 478.6047058105469 2 478.771263 955.527973 NaN NaN NaN NaN NaN NaN NaN 32.589 1 32.589 32.089 33.089 0 0 0 0 0.40738 1 5596 5596 0.79363 0 1 55083 3298 34520 34538 63333 63333 0.04843000347932502 WWKWLRQKRW 10 Unmodified _WWKWLRQKRW_ 0 0 0 REV__chr12:54283132-54283827|151|26.65|0.0|21.35|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54283132-54283827|151|26.65|0.0|21.35|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP UPN47_class_I_Rep_3 4 524.3010864257812 3 524.961478 1571.86261 -0.0037657 -1.9769E-06 0.060434 3.1726E-05 0.056668 2.9749E-05 524.9615612327904 42.592 0.3446 45.831 45.664 46.008 3.2394 28 21 2 0 0 0 0.84575 1 8738 8738 0.15932 0.064481 1 85013 + 55084 17432 34521 34539 63334 63334 0.09954928490128623 WWLCNYTF 8 Unmodified _WWLCNYTF_ 0 0 0 L1ME1_dup27581|chr17:46323089-46323398:-|1.3659483838665938|0.2408867542948243|2.5|151.0|10|3|sense L1ME1_dup27581|chr17:46323089-46323398:-|1.3659483838665938|0.2408867542948243|2.5|151.0|10|3|sense L1ME1_dup27581|chr17:46323089-46323398:-|1.3659483838665938|0.2408867542948243|2.5|151.0|10|3|sense MSMS UPN46_class_I_Rep_3 1 566.7489624023438 2 566.74967 1131.48479 NaN NaN NaN NaN NaN NaN NaN 15.309 1 15.309 14.809 15.809 0 0 0 0 0.40738 1 848 848 0.79363 0 1 55085 12357 34522 34540 63335 63335 -0.07569557491683554 WWLCVALT 8 Unmodified _WWLCVALT_ 0 0 0 REV__L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|25|3|sense REV__L1MB2_dup3778|chr7:152365910-152366731:+|1.6413693418389752|0.0098888693867998|7.37|151.0|25|3|sense MSMS UPN47_class_I_Rep_1 2 496.2554931640625 2 496.257131 990.499709 NaN NaN NaN NaN NaN NaN NaN 21.841 1 25.516 25.016 26.016 3.6749 0 0 0 0.40738 1 2439 2439 0.79363 0 1 + 55086 25724 34523 34541 63336 63336 0.004079343763464749 WWLGFFFY 8 Unmodified _WWLGFFFY_ 0 0 0 ENST00000275884.10_1_7:140218236-140218428:-|nuORF ENST00000275884.10_1_7:140218236-140218428:-|nuORF ENST00000275884.10_1_7:140218236-140218428:-|nuORF MSMS UPN48_class_I_Rep_1 5 583.2769775390625 2 583.278921 1164.54329 NaN NaN NaN NaN NaN NaN NaN 81.977 1 85.553 85.053 86.053 3.5753 0 0 0 0.40581 1 19564 19564 2.8892 0.15402 1 55087 6024 34524 34542 63337 63337 -0.03240132854853073 WWLGPHFL 8 Unmodified _WWLGPHFL_ 0 0 0 REV__ENST00000546424.5_1_1:15821928-15831209:-|nuORF REV__ENST00000546424.5_1_1:15821928-15831209:-|nuORF MSMS UPN47_class_I_Rep_1 2 528.2772216796875 2 528.276712 1054.53887 NaN NaN NaN NaN NaN NaN NaN 29.372 1 33.13 32.63 33.63 3.7578 0 0 0 0.4032 1 4656 4656 6.3541 0 1 + 55088 22937 34525 34543 63338 63338 0.01378402722230021 WWLGPHFL 8 Unmodified _WWLGPHFL_ 0 0 0 REV__ENST00000546424.5_1_1:15821928-15831209:-|nuORF REV__ENST00000546424.5_1_1:15821928-15831209:-|nuORF MSMS UPN47_class_I_Rep_3 4 528.2781982421875 2 528.276712 1054.53887 NaN NaN NaN NaN NaN NaN NaN 29.8 1 33.124 32.624 33.624 3.3235 0 0 0 0.40581 1 4863 4863 2.8892 0 1 + 55089 22937 34525 34543 63339 63339 0.01378402722230021 WWLLFPVTF 9 Unmodified _WWLLFPVTF_ 0 0 0 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 MSMS UPN47_class_I_Rep_2 3 604.8294067382812 2 604.828778 1207.643 NaN NaN NaN NaN NaN NaN NaN 83.774 1 87.186 86.686 87.686 3.4116 0 0 0 0.40038 1 20890 20890 0.6015 0 1 55090 2781 34526 34544 63340 63340 0.04748684759056232 WWLLLLHRH 9 Unmodified _WWLLLLHRH_ 0 0 0 REV__Tigger2b_Pri_dup802|chr5:177668003-177669089:+|1.1389505975665482|0.0415472403014946|4.78|150.0|33|3|sense REV__Tigger2b_Pri_dup802|chr5:177668003-177669089:+|1.1389505975665482|0.0415472403014946|4.78|150.0|33|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 637.37109375 2 637.369467 1272.72438 0.73674 0.00046957 -0.86217 -0.00054952 -0.12543 -7.9948E-05 637.3681944742416 102.54 0.046791 102.54 102.53 102.58 0 5 3 2 0 0 0 0.50015 1 25034 25034 0.6015 0 1 50104 + 55091 32703 34527 34545 63341 63341 0.09892805241679525 WWLLVDHGV 9 Unmodified _WWLLVDHGV_ 0 0 0 ERVL-E-int_dup3066|chr5:69922771-69922959:-|2.898637308559941|0.1916482268088046|3.92|132.0|8|3|sense ERVL-E-int_dup3066|chr5:69922771-69922959:-|2.898637308559941|0.1916482268088046|3.92|132.0|8|3|sense ERVL-E-int_dup3066|chr5:69922771-69922959:-|2.898637308559941|0.1916482268088046|3.92|132.0|8|3|sense MSMS UPN48_class_I_Rep_1 5 562.7965087890625 2 562.798009 1123.58147 NaN NaN NaN NaN NaN NaN NaN 53.699 1 57.213 56.713 57.713 3.5143 0 0 0 0.38478 1 11297 11297 4.3292 0.38484 1 55092 7748 34528 34546 63342 63342 0.024617530597879522 WWLLYWIT 8 Unmodified _WWLLYWIT_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|42|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|42|1|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|42|1|sense MSMS UPN48_class_I_Rep_3 7 590.8153686523438 2 590.813128 1179.6117 NaN NaN NaN NaN NaN NaN NaN 28.252 1 31.994 31.494 32.494 3.7424 0 0 0 0.40746 1 3819 3819 0.69038 0.088878 1 55093 10706 34529 34547 63343 63343 0.02908111724968876 WWLSSSQFY 9 Unmodified _WWLSSSQFY_ 0 0 0 REV__L1ME3_dup3248|chr6:37897021-37897825:-|2.1697099247885263|0.0061269839694319|8.47|151.0|46|2|anti-sense REV__L1ME3_dup3248|chr6:37897021-37897825:-|2.1697099247885263|0.0061269839694319|8.47|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_3 4 602.290283203125 2 602.277106 1202.53966 NaN NaN NaN NaN NaN NaN NaN 53.721 1 56.916 56.416 57.416 3.1948 0 0 0 0.39326 1 12141 12141 2.3027 0 1 + 55094 27949 34530 34548 63344 63344 -0.053508474193904476 WWLTKRLPQ 9 Unmodified _WWLTKRLPQ_ 0 0 0 REV__L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|9|1|sense REV__L1MA8_dup908|chr2:70018192-70020062:+|1.2822645469978862|0.3765436628702937|1.77|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 614.3526611328125 2 614.353483 1226.69241 NaN NaN NaN NaN NaN NaN NaN 29.526 1 33.255 32.755 33.755 3.7286 0 0 0 0.4007 1 4150 4150 0.52476 0 1 + 55095 25579 34531 34549 63345 63345 0.08813392767888217 WWPLDYMH 8 Unmodified _WWPLDYMH_ 0 0 0 REV__HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|347|2|anti-sense REV__HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|347|2|anti-sense MSMS UPN47_class_I_Rep_3 4 574.2545166015625 2 574.25512 1146.49569 NaN NaN NaN NaN NaN NaN NaN 117.18 1 120.63 120.13 121.13 3.4425 0 0 0 0.40746 1 28860 28860 0.69038 0 1 + 55096 23576 34532 34550 63346 63346 -0.07170155117387367 WWPLLAHNE 9 Unmodified _WWPLLAHNE_ 0 0 0 OTOF|p.R1895H|1|0.07|ENSG00000115155|chr2:26460880-26460880|C/T|missense_variant OTOF|p.R1895H|1|0.07|ENSG00000115155|chr2:26460880-26460880|C/T|missense_variant OTOF|p.R1895H|1|0.07|ENSG00000115155|chr2:26460880-26460880|C/T|missense_variant MSMS UPN47_class_I_Rep_3 4 583.293212890625 2 583.293091 1164.57163 NaN NaN NaN NaN NaN NaN NaN 62.449 1 65.615 65.115 66.115 3.1667 0 0 0 0.39518 1 14806 14806 1.8442 0 1 55097 16873 34533 34551 63347 63347 -0.004074349455777337 WWQAPAIP 8 Unmodified _WWQAPAIP_ 0 0 0 AluSz6_dup29366|chr11:33263330-33263611:-|1.5186808540490246|0.0520813598037653|4.87|151.0|8|3|sense AluSz6_dup29366|chr11:33263330-33263611:-|1.5186808540490246|0.0520813598037653|4.87|151.0|8|3|sense AluSz6_dup29366|chr11:33263330-33263611:-|1.5186808540490246|0.0520813598037653|4.87|151.0|8|3|sense MSMS UPN48_class_I_Rep_2 6 484.8511657714844 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 17.36 1 21.012 20.512 21.512 3.6518 0 0 0 0.40798 1 1000 1000 0 0 1 55098 384 34534 34552 63348 63348 0.006541234512155825 WWQIINTSSC 10 Unmodified _WWQIINTSSC_ 0 0 0 L1MC5_dup10512|chr12:11867235-11867430:-|1.395464072761631|0.0317285168632523|5.46|150.0|13|2|anti-sense L1MC5_dup10512|chr12:11867235-11867430:-|1.395464072761631|0.0317285168632523|5.46|150.0|13|2|anti-sense L1MC5_dup10512|chr12:11867235-11867430:-|1.395464072761631|0.0317285168632523|5.46|150.0|13|2|anti-sense MSMS UPN47_class_I_Rep_2 3 619.2874145507812 2 619.287148 1236.55974 NaN NaN NaN NaN NaN NaN NaN 63.146 1 66.402 65.902 66.902 3.2558 0 0 0 0.53105 1 14962 14962 3.2813 0 1 55099 11652 34535 34553 63349 63349 -0.049074197510663 WWQKAYVL 8 Unmodified _WWQKAYVL_ 0 0 0 REV__nc|ENSG00000101624|Q8TAP6-3|CEP76 REV__nc|ENSG00000101624|Q8TAP6-3|CEP76 MULTI-MSMS UPN46_class_I_Rep_3 1 547.2939453125 2 547.295102 1092.57565 0.025237 1.3812E-05 -0.7632 -0.0004177 -0.73796 -0.00040388 547.2946778557256 25.36 0.27571 25.36 25.233 25.509 0 36 25 2 0 0 0 0.82752 1 3495 3495 0.69038 0 1 54720 + 55100 18170 34536 34554 63350 63350 0.033066545481233334 WWQRDGRLL 9 Unmodified _WWQRDGRLL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-3|LLGL2;nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;ENST00000580027.1_1_17:73559414-73559615:+|nuORF nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-3|LLGL2 MSMS UPN47_class_I_Rep_1 2 615.331787109375 2 615.330539 1228.64652 NaN NaN NaN NaN NaN NaN NaN 66.43 1 69.787 69.287 70.287 3.3576 0 0 0 0.39428 1 15912 15912 2.0598 0.40713 1 55101 1114 34537 34555 63351 63351 0.041347475856582605 WWQSWRRV 8 Unmodified _WWQSWRRV_ 0 0 0 ENST00000475360.6_1_2:172702360-172704776:-|nuORF ENST00000475360.6_1_2:172702360-172704776:-|nuORF ENST00000475360.6_1_2:172702360-172704776:-|nuORF MSMS UPN47_class_I_Rep_2 3 401.8776550292969 3 401.877192 1202.60975 NaN NaN NaN NaN NaN NaN NaN 17.754 1 21.141 20.641 21.641 3.387 0 0 0 0.40746 1 1384 1384 0.40072 0.1317 1 55102 6955 34538 34556 63352 63352 0.0165449575972616 WWQWLKWRRLR 11 Unmodified _WWQWLKWRRLR_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS UPN47_class_I_Rep_1 2 571.9902954101562 3 571.991549 1712.95282 NaN NaN NaN NaN NaN NaN NaN 14.921 1 18.396 17.896 18.896 3.475 0 0 0 0.38417 1 685 685 0 0 1 55103 7398 34539 34557 63353 63353 0.12485977818550964 WWQWWIWWWWP 11 Unmodified _WWQWWIWWWWP_ 0 0 0 REV__chr12:54282841-54283827|151|28.39|0.0|21.44|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|151|28.39|0.0|21.44|+|1|HNRNPA1,HNRNPA1|1 MSMS UPN48_class_I_Rep_3 7 615.953857421875 3 615.954101 1844.84047 NaN NaN NaN NaN NaN NaN NaN 57.783 1 61.314 60.814 61.814 3.5317 0 0 0 0.38417 1 12462 12462 0 0 1 + 55104 17430 34540 34558 63354 63354 -0.048152959782783 WWRKIFYA 8 Unmodified _WWRKIFYA_ 0 0 0 L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|37|2|sense L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|37|2|sense L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|37|2|sense MSMS UPN46_class_I_Rep_3 1 585.31640625 2 585.316369 1168.61818 NaN NaN NaN NaN NaN NaN NaN 81.693 1 81.693 81.193 82.193 0 0 0 0 0.40746 1 19307 19307 0.69038 0 1 55105 10106 34541 34559 63355 63355 0.04062049676372226 WWRSPWMQ 8 Unmodified _WWRSPWMQ_ 0 0 0 ENST00000524227.5_1_8:41525962-41555361:-|nuORF ENST00000524227.5_1_8:41525962-41555361:-|nuORF ENST00000524227.5_1_8:41525962-41555361:-|nuORF MSMS UPN46_class_I_Rep_3 1 588.7723388671875 2 588.774011 1175.53347 NaN NaN NaN NaN NaN NaN NaN 75.908 1 75.908 75.408 76.408 0 0 0 0 0.40625 1 17676 17676 2.3027 0.4585 1 55106 7248 34542 34560 63356 63356 -0.047276441319127116 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN46_class_I_Rep_3 1 561.8768310546875 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 43.798 1 43.798 43.298 44.298 0 0 0 0 0.38417 1 8774 8774 0.08335 0.08335 1 55107 16751 34543 34561 63357 63357 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MULTI-SECPEP UPN47_class_I_Rep_2 3 562.24853515625 3 561.967515 1682.88072 0.045143 2.5369E-05 -3.7902 -0.00213 -3.745 -0.0021046 562.2995558854864 40.166 0.24035 43.537 43.461 43.701 3.3712 17 14 2 0 0 0 22.551 1 7991 7991 0 0 1 67717 55108 16751 34543 34561 63358 63358 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN48_class_I_Rep_1 5 561.9649047851562 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 39.483 1 42.988 42.488 43.488 3.5048 0 0 0 0.38417 1 6977 6977 0 0 1 55109 16751 34543 34561 63359 63359 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN48_class_I_Rep_1 5 561.9657592773438 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 39.607 1 43.112 42.612 43.612 3.5048 0 0 0 0.38417 1 7015 7015 0.08335 0.08335 1 55110 16751 34543 34561 63360 63360 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN48_class_I_Rep_1 5 561.9656982421875 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 39.736 1 43.241 42.741 43.741 3.5048 0 0 0 0.38417 1 7051 7051 0 0 1 55111 16751 34543 34561 63361 63361 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN48_class_I_Rep_3 7 561.96533203125 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 39.328 1 42.983 42.483 43.483 3.6557 0 0 0 0.38417 1 6866 6866 0.08335 0.08335 1 55112 16751 34543 34561 63362 63362 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN48_class_I_Rep_3 7 561.9664306640625 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 39.447 1 43.103 42.603 43.603 3.6557 0 0 0 0.38417 1 6902 6902 0.40827 0.40827 1 55113 16751 34543 34561 63363 63363 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS UPN48_class_I_Rep_3 7 561.9654541015625 3 561.967515 1682.88072 NaN NaN NaN NaN NaN NaN NaN 39.616 1 43.272 42.772 43.772 3.6557 0 0 0 0.38417 1 6950 6950 0 0 1 55114 16751 34543 34561 63364 63364 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 3 561.967515 1682.88072 0.42216 0.00023724 -3.2557 -0.0018296 -2.8335 -0.0015924 561.9656643938924 43.425 0.58495 43.425 43.165 43.75 0 -0.044232 0.00045104 NaN 0 75 56 2 NaN NaN NaN NaN 0 NaN NaN 0 153900 55115 16751 34543 34561 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MULTI-MATCH UPN47_class_I_Rep_3 4 3 561.967515 1682.88072 -0.03262 -1.8331E-05 -4.2425 -0.0023841 -4.2751 -0.0024025 561.9654237861749 40.102 0.33225 43.339 43.273 43.606 3.2372 -0.13031 -0.0012125 NaN 0 26 21 2 NaN NaN NaN NaN 0 NaN NaN 0 82234 55116 16751 34543 34561 0.06659063464871906 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MULTI-MATCH UPN48_class_I_Rep_1 5 3 561.967515 1682.88072 0.47055 0.00026443 -4.7589 -0.0026744 -4.2884 -0.0024099 561.9656484015125 40.072 0.03941 43.576 43.553 43.593 3.5048 0.10684 -0.0020832 NaN 0 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 30609 55117 16751 34543 34561 0.06659063464871906 WWRYIRRQMCS 11 Unmodified _WWRYIRRQMCS_ 0 0 0 Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|28|2|sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|28|2|sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 528.926513671875 3 528.92734 1583.76019 -0.24607 -0.00013015 -0.82732 -0.00043759 -1.0734 -0.00056775 528.9268723847821 30.615 0.6127 33.927 33.662 34.275 3.3116 76 47 2 0 0 0 0.68478 1 5175 5175 0.094841 0.094841 1 84594 55118 33175 34544 34562 63365 63365 -0.008338486352613472 WWVFFPLS 8 Unmodified _WWVFFPLS_ 0 0 0 L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|140|3|anti-sense L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|140|3|anti-sense L1MC1_dup11738|chr17:21154325-21156324:+|5.528709470341909|0.061573607097637|6.49|151.0|140|3|anti-sense MSMS UPN47_class_I_Rep_1 2 541.279052734375 2 541.278921 1080.54329 NaN NaN NaN NaN NaN NaN NaN 18.649 1 22.229 21.729 22.729 3.5806 0 0 0 0.40738 1 1596 1596 0.79363 0 1 55119 11103 34545 34563 63366 63366 0.006238671451455957 WWVFSFNTL 9 Unmodified _WWVFSFNTL_ 0 0 0 L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|101|3|anti-sense L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|101|3|anti-sense L1MCb_dup227|chr2:119901032-119902503:+|1.293053521390803|0.023455362791101|5.78|150.0|101|3|anti-sense MSMS UPN47_class_I_Rep_3 4 600.2984008789062 2 600.297842 1198.58113 NaN NaN NaN NaN NaN NaN NaN 63.952 1 67.126 66.626 67.626 3.1741 0 0 0 0.40038 1 15261 15261 0.6015 0 1 55120 11850 34546 34564 63367 63367 -0.010216666600399549 WWVGAQTISCS 11 Unmodified _WWVGAQTISCS_ 0 0 0 REV__AluJo_dup46810|chr11:47634085-47634379:-|1.0787004660133108|0.069317867596094|3.96|151.0|15|1|anti-sense REV__AluJo_dup46810|chr11:47634085-47634379:-|1.0787004660133108|0.069317867596094|3.96|151.0|15|1|anti-sense MSMS UPN47_class_I_Rep_1 2 619.2882690429688 2 619.287148 1236.55974 NaN NaN NaN NaN NaN NaN NaN 62.7 1 66.059 65.559 66.559 3.3595 0 0 0 0.38417 1 14790 14790 4.5289 1.2476 1 + 55121 16998 34547 34565 63368 63368 -0.049074197510663 WWVGAQTISCS 11 Unmodified _WWVGAQTISCS_ 0 0 0 REV__AluJo_dup46810|chr11:47634085-47634379:-|1.0787004660133108|0.069317867596094|3.96|151.0|15|1|anti-sense REV__AluJo_dup46810|chr11:47634085-47634379:-|1.0787004660133108|0.069317867596094|3.96|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 619.2884521484375 2 619.287148 1236.55974 0.41675 0.00025809 2.0669 0.00128 2.4836 0.0015381 619.2884495909086 62.748 0.24241 65.918 65.851 66.093 3.1698 21 13 2 0 0 0 0.50573 1 14904 14904 7.609 0.31972 1 133800 + 55122 16998 34547 34565 63369 63369 -0.049074197510663 WWVGAQTISCS 11 Unmodified _WWVGAQTISCS_ 0 0 0 REV__AluJo_dup46810|chr11:47634085-47634379:-|1.0787004660133108|0.069317867596094|3.96|151.0|15|1|anti-sense REV__AluJo_dup46810|chr11:47634085-47634379:-|1.0787004660133108|0.069317867596094|3.96|151.0|15|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 619.287148 1236.55974 0.43331 0.00026834 1.7711 0.0010968 2.2044 0.0013652 619.2879968955825 62.62 0.43047 65.875 65.827 66.258 3.2558 -0.021167 -0.0002046 NaN 7.609 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 104190 + 55123 16998 34547 34565 -0.049074197510663 WWVLHWSV 8 Unmodified _WWVLHWSV_ 0 0 0 REV__ENST00000550161.5_1_12:48359628-48359733:+|nuORF REV__ENST00000550161.5_1_12:48359628-48359733:+|nuORF MSMS UPN48_class_I_Rep_3 7 556.7869262695312 2 556.787444 1111.56034 NaN NaN NaN NaN NaN NaN NaN 76.273 1 79.856 79.356 80.356 3.5831 0 0 0 0.40738 1 17959 17959 0.79363 0 1 + 55124 22954 34548 34566 63370 63370 0.009017877509222672 WWVLWLET 8 Unmodified _WWVLWLET_ 0 0 0 REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF MSMS UPN47_class_I_Rep_1 2 566.7973022460938 2 566.794935 1131.57532 NaN NaN NaN NaN NaN NaN NaN 69.321 1 72.688 72.188 73.188 3.3678 0 0 0 0.40738 1 16789 16789 0.79363 0 1 + 55125 22829 34549 34567 63371 63371 0.014792348282753665 WWVMERGKRG 10 Unmodified _WWVMERGKRG_ 0 0 0 ENST00000398985.1_1_17:25887428-25904874:+|nuORF ENST00000398985.1_1_17:25887428-25904874:+|nuORF ENST00000398985.1_1_17:25887428-25904874:+|nuORF MSMS UPN48_class_I_Rep_1 5 435.55938720703125 3 435.560875 1303.66079 NaN NaN NaN NaN NaN NaN NaN 98.217 1 101.82 101.32 102.32 3.6065 0 0 0 0.53105 1 23699 23699 0.69767 0.07084 1 55126 6587 34550 34568 63372 63372 0.021110767422669596 WWVNGKGD 8 Unmodified _WWVNGKGD_ 0 0 0 ENSG00000215009|ENST00000399422|ACSM4 ENSG00000215009|ENST00000399422|ACSM4 ENSG00000215009|ENST00000399422|ACSM4 MSMS UPN47_class_I_Rep_2 3 481.2298889160156 2 481.229959 960.445365 NaN NaN NaN NaN NaN NaN NaN 28.994 1 32.487 31.987 32.987 3.4923 0 0 0 0.40738 1 4580 4580 0.79363 0 1 55127 5628 34551 34569 63373 63373 -0.03643941450854982 WWVTVWPRWE 10 Unmodified _WWVTVWPRWE_ 0 0 0 REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF MSMS UPN47_class_I_Rep_2 3 482.2438049316406 3 482.24354 1443.70879 NaN NaN NaN NaN NaN NaN NaN 116.12 1 119.62 119.12 120.12 3.4965 0 0 0 0.53105 1 28338 28338 0.15932 0 1 + 55128 23154 34552 34570 63374 63374 0.004684739339836597 WWVWCKKQ 8 Unmodified _WWVWCKKQ_ 0 0 0 REV__AluSx_dup25944|chr4:39774016-39774321:+|1.0540961484578473|0.1504088638571576|2.81|151.0|1|1|sense REV__AluSx_dup25944|chr4:39774016-39774321:+|1.0540961484578473|0.1504088638571576|2.81|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 582.2936401367188 2 582.294579 1162.57461 NaN NaN NaN NaN NaN NaN NaN 75.346 1 75.346 74.846 75.846 0 0 0 0 0.40746 1 17514 17514 0.69038 0 1 + 55129 17137 34553 34571 63375 63375 -0.00017883092436932202 WWWAFKNP 8 Unmodified _WWWAFKNP_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MSMS UPN47_class_I_Rep_1 2 567.779296875 2 567.779619 1133.54469 NaN NaN NaN NaN NaN NaN NaN 21.916 1 25.59 25.09 26.09 3.6749 0 0 0 0.40738 1 2459 2459 0.79363 0 1 55130 5431 34554 34572 63376 63376 -0.01674498766101351 WWWFVAPW 8 Unmodified _WWWFVAPW_ 0 0 0 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 MSMS UPN47_class_I_Rep_3 4 589.2514038085938 2 589.284537 1176.55452 NaN NaN NaN NaN NaN NaN NaN 18.668 1 22.022 21.522 22.522 3.3545 0 0 0 0.40798 1 1597 1597 0 0 1 55131 16708 34555 34573 63377 63377 -0.026693107607343336 WWWGRRGN 8 Unmodified _WWWGRRGN_ 0 0 0 L1MA9_dup4892|chr5:62308377-62308950:+|1.134026752891835|0.0143220370196365|6.31|151.0|19|3|sense L1MA9_dup4892|chr5:62308377-62308950:+|1.134026752891835|0.0143220370196365|6.31|151.0|19|3|sense L1MA9_dup4892|chr5:62308377-62308950:+|1.134026752891835|0.0143220370196365|6.31|151.0|19|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.8212890625 2 559.275567 1116.53658 0.046723 2.6131E-05 0.49463 0.00027663 0.54135 0.00030277 559.779040945826 27.866 0.062836 31.365 31.338 31.401 3.4986 6 4 2 0 0 0 0.82752 1 4247 4247 0.79363 0 1 19774 55132 10137 34556 34574 63378 63378 -0.017026329628606618 WWWGRSIK 8 Unmodified _WWWGRSIK_ 0 0 0 REV__AluSx1_dup105170|chr19:14389451-14389763:+|3.597114105035845|0.0419295716790045|6.42|151.0|2|1|sense REV__AluSx1_dup105170|chr19:14389451-14389763:+|3.597114105035845|0.0419295716790045|6.42|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 559.796630859375 2 559.798343 1117.58213 NaN NaN NaN NaN NaN NaN NaN 21.57 1 25.216 24.716 25.716 3.6459 0 0 0 0.40738 1 2060 2060 0.79363 0 1 + 55133 17164 34557 34575 63379 63379 0.028045924995012683 WWWMHEPT 8 Unmodified _WWWMHEPT_ 0 0 0 L1MD2_dup5602|chr9:92631666-92632418:-|1.2398944032752075|0.1375919344193154|3.17|151.0|6|1|sense L1MD2_dup5602|chr9:92631666-92632418:-|1.2398944032752075|0.1375919344193154|3.17|151.0|6|1|sense L1MD2_dup5602|chr9:92631666-92632418:-|1.2398944032752075|0.1375919344193154|3.17|151.0|6|1|sense MSMS UPN48_class_I_Rep_2 6 586.7510375976562 2 586.752744 1171.49094 NaN NaN NaN NaN NaN NaN NaN 117.28 1 120.94 120.44 121.44 3.6607 0 0 0 0.40738 1 28105 28105 0.79363 0.10326 1 55134 12007 34558 34576 63380 63380 -0.08795039260121484 WWWRWLRRRR 10 Unmodified _WWWRWLRRRR_ 0 0 0 REV__chr12:54283228-54283827|151|51.92|0.0|22.31|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54283228-54283827|151|51.92|0.0|22.31|+|1|HNRNPA1,HNRNPA1|2 MULTI-MSMS UPN48_class_I_Rep_1 5 552.9811401367188 3 552.979755 1655.91744 0.49938 0.00027615 1.1378 0.00062915 1.6371 0.0009053 552.9804865337852 110.1 0.1678 113.73 113.61 113.77 3.6326 33 24 2 0 0 0 0.56523 1 26741 26741 0.13989 0.13989 1 171500 + 55135 17433 34559 34577 63381 63381 0.11571360081393323 WWWRWLRRRR 10 Unmodified _WWWRWLRRRR_ 0 0 0 REV__chr12:54283228-54283827|151|51.92|0.0|22.31|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54283228-54283827|151|51.92|0.0|22.31|+|1|HNRNPA1,HNRNPA1|2 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 552.979755 1655.91744 0.49938 0.00027615 1.1378 0.00062915 1.6371 0.0009053 552.9804865337852 110.1 0.1678 113.73 113.61 113.77 3.6326 -0.17929 -5.7735E-05 NaN 0.13989 33 24 2 NaN NaN NaN NaN 0 NaN NaN 0 171500 + 55136 17433 34559 34577 0.11571360081393323 WWWRWLRRRR 10 Unmodified _WWWRWLRRRR_ 0 0 0 REV__chr12:54283228-54283827|151|51.92|0.0|22.31|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54283228-54283827|151|51.92|0.0|22.31|+|1|HNRNPA1,HNRNPA1|2 MULTI-MATCH UPN48_class_I_Rep_3 7 3 552.979755 1655.91744 0.38403 0.00021236 1.4973 0.00082796 1.8813 0.0010403 553.3150566561875 110.42 0.079506 114.09 114.03 114.11 3.67 0.17929 0.0005387 NaN 0.13989 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 57429 + 55137 17433 34559 34577 0.11571360081393323 WWWSHGYL 8 Unmodified _WWWSHGYL_ 0 0 0 L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|3|1|sense L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|3|1|sense L1MA3_dup3493|chr6:70697606-70699969:-|1.218346850411684|0.230014958685154|2.41|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 567.7611083984375 2 567.761426 1133.5083 NaN NaN NaN NaN NaN NaN NaN 114.26 1 117.84 117.34 118.34 3.5809 0 0 0 0.40738 1 28227 28227 0.79363 0 1 55138 9533 34560 34578 63382 63382 -0.05311375662836326 WWWTQSIK 8 Unmodified _WWWTQSIK_ 0 0 0 REV__AluSq2_dup46960|chr15:68796091-68796379:-|2.352831426232749|0.104611481574081|4.49|151.0|7|2|sense REV__AluSq2_dup46960|chr15:68796091-68796379:-|2.352831426232749|0.104611481574081|4.49|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 567.7901000976562 2 567.790184 1133.56581 NaN NaN NaN NaN NaN NaN NaN 114.47 1 114.47 113.97 114.97 0 0 0 0 0.40738 1 28294 28294 0.79363 0.19213 1 + 55139 17123 34561 34579 63383 63383 0.004374665427576474 WWWWHAMP 8 Unmodified _WWWWHAMP_ 0 0 0 REV__ENST00000309311.6_1_19:3982950-3983158:-|nuORF REV__ENST00000309311.6_1_19:3982950-3983158:-|nuORF MSMS UPN47_class_I_Rep_1 2 600.2645263671875 2 600.265822 1198.51709 NaN NaN NaN NaN NaN NaN NaN 55.16 1 58.644 58.144 59.144 3.4844 0 0 0 0.40738 1 12499 12499 0.79363 0.10326 1 + 55140 21698 34562 34580 63384 63384 -0.07422725298010846 WWWWLYKLIFT 11 Unmodified _WWWWLYKLIFT_ 0 0 0 L1ME1_dup27615|chr17:49352488-49353121:+|1.2835049439607704|0.0149493490500186|6.42|150.0|24|3|sense L1ME1_dup27615|chr17:49352488-49353121:+|1.2835049439607704|0.0149493490500186|6.42|150.0|24|3|sense L1ME1_dup27615|chr17:49352488-49353121:+|1.2835049439607704|0.0149493490500186|6.42|150.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 547.7919311523438 3 547.958741 1640.85439 NaN NaN NaN NaN NaN NaN NaN 85.665 1 85.665 85.165 86.165 0 0 0 0 0.38417 1 20447 20447 0 0 1 55141 12358 34563 34581 63385 63385 0.05959936730141635 WWYPVPKI 8 Unmodified _WWYPVPKI_ 0 0 0 REV__L1ME4b_dup17328|chr15:63579966-63580127:+|1.1065244987597704|0.0666979849596516|4.05|151.0|12|3|anti-sense REV__L1ME4b_dup17328|chr15:63579966-63580127:+|1.1065244987597704|0.0666979849596516|4.05|151.0|12|3|anti-sense MSMS UPN48_class_I_Rep_2 6 544.7735595703125 2 544.80002 1087.58549 NaN NaN NaN NaN NaN NaN NaN 18.888 1 22.539 22.039 23.039 3.6509 0 0 0 0.40738 1 1340 1340 0.79363 0.10326 1 + 55142 28267 34564 34582 63386 63386 0.04519842553509079 WYAHVIPA 8 Unmodified _WYAHVIPA_ 0 0 0 AluSx3_dup31505|chr21:34863551-34863815:-|3.637340861006745|0.0419993273085992|6.44|151.0|2|1|sense AluSx3_dup31505|chr21:34863551-34863815:-|3.637340861006745|0.0419993273085992|6.44|151.0|2|1|sense AluSx3_dup31505|chr21:34863551-34863815:-|3.637340861006745|0.0419993273085992|6.44|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 478.8105163574219 2 478.75307 955.491587 NaN NaN NaN NaN NaN NaN NaN 35.866 1 39.542 39.042 40.042 3.6762 0 0 0 0.40738 1 6628 6628 0.79363 0 1 55143 334 34565 34583 63387 63387 0.012061234512202645 WYCFRRYRL 9 Unmodified _WYCFRRYRL_ 0 0 0 ENST00000593099.5_1_17:33325156-33325826:+|nuORF ENST00000593099.5_1_17:33325156-33325826:+|nuORF ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS UPN47_class_I_Rep_1 2 454.8665771484375 3 454.90112 1361.68153 NaN NaN NaN NaN NaN NaN NaN 21.405 1 25.048 24.548 25.548 3.6436 0 0 0 0.40177 1 2316 2316 0.26902 0.1097 1 55144 7641 34566 34584 63388 63388 0.015156671219529017 WYCGVPGHLT 10 Unmodified _WYCGVPGHLT_ 0 0 0 LTR10D_dup156|chr19:10751811-10752309:-|1.4732973061447878|0.0185438179080226|6.31|151.0|25|2|anti-sense LTR10D_dup156|chr19:10751811-10752309:-|1.4732973061447878|0.0185438179080226|6.31|151.0|25|2|anti-sense LTR10D_dup156|chr19:10751811-10752309:-|1.4732973061447878|0.0185438179080226|6.31|151.0|25|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.7677001953125 2 566.765852 1131.51715 0.30303 0.00017175 1.3152 0.00074538 1.6182 0.00091713 567.2675747198148 53.212 0.067986 56.74 56.714 56.782 3.5278 6 4 2 0 0 0 0.56281 1 11908 11908 1.8442 0 1 34027 55145 15517 34567 34585 63389 63389 -0.04334770088644291 WYCRGLFY 8 Unmodified _WYCRGLFY_ 0 0 0 MER20_dup13538|chr16:53318622-53318823:+|1.6725899994742983|0.2683928883733288|2.64|151.0|13|3|anti-sense MER20_dup13538|chr16:53318622-53318823:+|1.6725899994742983|0.2683928883733288|2.64|151.0|13|3|anti-sense MER20_dup13538|chr16:53318622-53318823:+|1.6725899994742983|0.2683928883733288|2.64|151.0|13|3|anti-sense MSMS UPN47_class_I_Rep_2 3 554.2579956054688 2 554.257662 1106.50077 NaN NaN NaN NaN NaN NaN NaN 86.585 1 90.026 89.526 90.526 3.4407 0 0 0 0.4032 1 21537 21537 6.3541 0 1 55146 15833 34568 34586 63390 63390 -0.048218512547691716 WYCRPWRW 8 Unmodified _WYCRPWRW_ 0 0 0 REV__ENST00000341500.9_1_19:7267817-7293934:-|nuORF REV__ENST00000341500.9_1_19:7267817-7293934:-|nuORF MSMS UPN47_class_I_Rep_3 4 626.7975463867188 2 626.795278 1251.576 NaN NaN NaN NaN NaN NaN NaN 54.914 1 58.093 57.593 58.593 3.1792 0 0 0 0.40746 1 12507 12507 0.69038 0.088878 1 + 55147 21827 34569 34587 63391 63391 -0.039722490036865565 WYCWVKWY 8 Unmodified _WYCWVKWY_ 0 0 0 L1PA12_dup484|chr4:39137832-39138767:+|1.5123782879906786|0.4212441995773073|1.84|151.0|55|2|anti-sense;L1PA11_dup3181|chr12:50772754-50773445:-|1.0042100852906188|0.0228631992651647|5.46|151.0|36|2|anti-sense L1PA12_dup484|chr4:39137832-39138767:+|1.5123782879906786|0.4212441995773073|1.84|151.0|55|2|anti-sense L1PA12_dup484|chr4:39137832-39138767:+|1.5123782879906786|0.4212441995773073|1.84|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_3 7 617.28125 2 617.281137 1232.54772 NaN NaN NaN NaN NaN NaN NaN 47.536 1 51.17 50.67 51.67 3.6339 0 0 0 0.40746 1 9338 9338 0.69038 0.16561 1 55148 13671 34570 34588 63392 63392 -0.05924991703591331 WYDLIGYW 8 Unmodified _WYDLIGYW_ 0 0 0 REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|172|2|anti-sense REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|172|2|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2637329101562 2 558.263468 1114.51238 NaN NaN NaN NaN NaN NaN NaN 29.411 1 32.904 32.404 33.404 3.4923 0 0 0 0.40738 1 4706 4706 0.79363 0 1 + 55149 27336 34571 34589 63393 63393 -0.0402933095977005 WYDTQLIMV 9 Unmodified _WYDTQLIMV_ 0 0 0 L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|330|3|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|330|3|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|330|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.789306640625 2 584.788992 1167.56343 NaN NaN NaN NaN NaN NaN NaN 15.674 1 15.674 15.174 16.174 0 0 0 0 0.4007 1 940 940 0.52476 0 1 55150 15077 34572 34590 63394 63394 -0.01364749977210522 WYEPDLRR 8 Unmodified _WYEPDLRR_ 0 0 0 REV__nc|ENSG00000156671|Q96LT4-2|SAMD8 REV__nc|ENSG00000156671|Q96LT4-2|SAMD8 MSMS UPN47_class_I_Rep_2 3 567.79052734375 2 567.788173 1133.56179 NaN NaN NaN NaN NaN NaN NaN 24.891 1 28.374 27.874 28.874 3.483 0 0 0 0.40604 1 3373 3373 2.5775 0.51773 1 + 55151 19801 34573 34591 63395 63395 0.0003537704903919803 WYEYDLKW 8 Unmodified _WYEYDLKW_ 0 0 0 FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion FLT3|Y597insYEYDLKW|na|na|ENSG00000122025|na|na|inframe_insertion MSMS UPN46_class_I_Rep_3 1 601.7797241210938 2 601.779482 1201.54441 NaN NaN NaN NaN NaN NaN NaN 83.571 1 83.571 83.071 84.071 0 0 0 0 0.40746 1 19858 19858 0.69038 0 1 55152 7777 34574 34592 63396 63396 -0.04829963276642957 WYFCLMFL 8 Unmodified _WYFCLMFL_ 0 0 0 L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|143|3|anti-sense L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|143|3|anti-sense L1PA15_dup4850|chrX:74020975-74023237:+|1.4669531193008216|0.2941284171802164|2.32|150.0|143|3|anti-sense MSMS UPN47_class_I_Rep_1 2 561.7609252929688 2 561.761192 1121.50783 NaN NaN NaN NaN NaN NaN NaN 82.924 1 86.463 85.963 86.963 3.5386 0 0 0 0.40738 1 20728 20728 0.79363 0 1 55153 13945 34575 34593 63397 63397 -0.04806254698519297 WYFHCTEN 8 Unmodified _WYFHCTEN_ 0 0 0 L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|41|1|anti-sense L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|41|1|anti-sense L1MEf_dup32|chr1:10578450-10579421:+|1.1908298953081895|0.2407892362488894|2.31|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_2 6 550.2181396484375 2 550.218734 1098.42292 NaN NaN NaN NaN NaN NaN NaN 57.874 1 61.388 60.888 61.888 3.5142 0 0 0 0.40604 1 12555 12555 2.5775 0 1 55154 13265 34576 34594 63398 63398 -0.12235908910793114 WYFTSYFY 8 Unmodified _WYFTSYFY_ 0 0 0 REV__L1M4_dup669|chr1:145841513-145841995:-|1.372388708089822|0.3377737044666122|2.02|151.0|9|2|sense REV__L1M4_dup669|chr1:145841513-145841995:-|1.372388708089822|0.3377737044666122|2.02|151.0|9|2|sense MSMS UPN47_class_I_Rep_3 4 588.7539672851562 2 588.755475 1175.4964 NaN NaN NaN NaN NaN NaN NaN 38.341 1 41.582 41.082 42.082 3.2414 0 0 0 0.40625 1 7453 7453 2.3027 0.24298 1 + 55155 24442 34577 34595 63399 63399 -0.08433037196664372 WYFYLQIK 8 Unmodified _WYFYLQIK_ 0 0 0 Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|60|3|sense Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|60|3|sense Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|60|3|sense MSMS UPN47_class_I_Rep_1 2 581.263427734375 2 580.810585 1159.60662 NaN NaN NaN NaN NaN NaN NaN 31.231 1 34.96 34.46 35.46 3.7293 0 0 0 0.40746 1 5211 5211 0.69038 0.088878 1 55156 33450 34578 34596 63400 63400 0.033198078623627225 WYGFIYKI 8 Unmodified _WYGFIYKI_ 0 0 0 REV__L1M6_dup4908|chr16:23941360-23942080:+|2.4146250822953275|0.0045749399120179|9.04|151.0|29|1|anti-sense REV__L1M6_dup4908|chr16:23941360-23942080:+|2.4146250822953275|0.0045749399120179|9.04|151.0|29|1|anti-sense MSMS UPN47_class_I_Rep_1 2 545.2913208007812 2 545.292028 1088.5695 NaN NaN NaN NaN NaN NaN NaN 22.901 1 26.606 26.106 27.106 3.7042 0 0 0 0.40738 1 2742 2742 0.79363 0 1 + 55157 24724 34579 34597 63401 63401 0.028761363166267984 WYGMGRGY 8 Unmodified _WYGMGRGY_ 0 0 0 LTR1B1_dup136|chr12:25084890-25085748:-|1.4094482362517131|0.0425617995569084|5.05|151.0|48|3|anti-sense LTR1B1_dup136|chr12:25084890-25085748:-|1.4094482362517131|0.0425617995569084|5.05|151.0|48|3|anti-sense LTR1B1_dup136|chr12:25084890-25085748:-|1.4094482362517131|0.0425617995569084|5.05|151.0|48|3|anti-sense MSMS UPN48_class_I_Rep_2 6 495.22039794921875 2 495.218537 988.422522 NaN NaN NaN NaN NaN NaN NaN 48.652 1 52.37 51.87 52.87 3.7175 0 0 0 0.40738 1 9744 9744 0.79363 0 1 55158 15590 34580 34598 63402 63402 -0.07215283839968833 WYHLTCSFVP 10 Unmodified _WYHLTCSFVP_ 0 0 0 L1MC5_dup10038|chr11:43477774-43478617:+|5.379606662812346|0.1123162054763607|5.58|151.0|53|2|anti-sense L1MC5_dup10038|chr11:43477774-43478617:+|5.379606662812346|0.1123162054763607|5.58|151.0|53|2|anti-sense L1MC5_dup10038|chr11:43477774-43478617:+|5.379606662812346|0.1123162054763607|5.58|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 626.7938842773438 2 626.794609 1251.57467 0.39726 0.000249 -1.1232 -0.00070405 -0.72599 -0.00045505 626.7936622522456 61.597 0.63988 64.764 64.471 65.11 3.1667 69 45 2 0 0 0 0.56033 1 14531 14531 3.5965 0 1 176570 55159 11646 34581 34599 63403 63403 -0.04105927883097138 WYIHTKEW 8 Unmodified _WYIHTKEW_ 0 0 0 L1MC4a_dup3470|chr6:4808724-4809466:-|1.0565248238586673|0.0061105654519889|7.43|150.0|11|2|sense L1MC4a_dup3470|chr6:4808724-4809466:-|1.0565248238586673|0.0061105654519889|7.43|150.0|11|2|sense L1MC4a_dup3470|chr6:4808724-4809466:-|1.0565248238586673|0.0061105654519889|7.43|150.0|11|2|sense MSMS UPN48_class_I_Rep_1 5 581.7886962890625 2 581.787641 1161.56073 NaN NaN NaN NaN NaN NaN NaN 72.843 1 76.316 75.816 76.816 3.4732 0 0 0 0.40625 1 17124 17124 2.3027 0.24298 1 55160 11562 34582 34600 63404 63404 -0.013588373198672343 WYIHYKKY 8 Unmodified _WYIHYKKY_ 0 0 0 L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|57|2|sense L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|57|2|sense L1ME2_dup8401|chr11:6552836-6554972:+|1.538021828031697|0.4942835977445038|1.64|151.0|57|2|sense MSMS UPN48_class_I_Rep_2 6 600.8141479492188 2 600.813659 1199.61277 NaN NaN NaN NaN NaN NaN NaN 114.11 1 117.77 117.27 118.27 3.663 0 0 0 0.40746 1 27258 27258 0.69038 0.088878 1 55161 12532 34583 34601 63405 63405 0.020943260938793173 WYIPFDLF 8 Unmodified _WYIPFDLF_ 0 0 0 REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|167|1|anti-sense REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|167|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 550.815673828125 2 550.776211 1099.53787 0.32224 0.00017748 -0.85856 -0.00047287 -0.53632 -0.00029539 550.7755681341895 39.654 0.056625 43.31 43.292 43.348 3.6557 6 4 2 0 0 0 0.72333 1 6961 6961 5.7604 0 1 67896 + 55162 24849 34584 34602 63406 63406 -0.007918564373539994 WYIRFLLY 8 Unmodified _WYIRFLLY_ 0 0 0 REV__L1MD2_dup2470|chr4:48769346-48770258:+|1.1498128658268036|0.0361651479795618|4.99|151.0|53|2|anti-sense REV__L1MD2_dup2470|chr4:48769346-48770258:+|1.1498128658268036|0.0361651479795618|4.99|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_1 2 587.3276977539062 2 587.326402 1172.63825 NaN NaN NaN NaN NaN NaN NaN 63.788 1 67.143 66.643 67.643 3.3557 0 0 0 0.40738 1 15115 15115 0.79363 0 1 + 55163 27395 34585 34603 63407 63407 0.05883800616334156 WYIRFLLY 8 Unmodified _WYIRFLLY_ 0 0 0 REV__L1MD2_dup2470|chr4:48769346-48770258:+|1.1498128658268036|0.0361651479795618|4.99|151.0|53|2|anti-sense REV__L1MD2_dup2470|chr4:48769346-48770258:+|1.1498128658268036|0.0361651479795618|4.99|151.0|53|2|anti-sense MSMS UPN47_class_I_Rep_2 3 587.3273315429688 2 587.326402 1172.63825 NaN NaN NaN NaN NaN NaN NaN 63.864 1 67.119 66.619 67.619 3.2556 0 0 0 0.40738 1 15176 15176 0.79363 0 1 + 55164 27395 34585 34603 63408 63408 0.05883800616334156 WYIWIGPF 8 Unmodified _WYIWIGPF_ 0 0 0 REV__ENST00000469606.5_1_1:212126007-212139828:-|nuORF REV__ENST00000469606.5_1_1:212126007-212139828:-|nuORF MSMS UPN47_class_I_Rep_3 4 541.2811889648438 2 541.278921 1080.54329 NaN NaN NaN NaN NaN NaN NaN 19.299 1 22.651 22.151 23.151 3.3514 0 0 0 0.40738 1 1777 1777 0.79363 0 1 + 55165 22495 34586 34604 63409 63409 0.006238671451455957 WYIYSHTR 8 Unmodified _WYIYSHTR_ 0 0 0 nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG nc|ENSG00000106991|P17813-2|ENG nc|ENSG00000106991|P17813-2|ENG MSMS UPN47_class_I_Rep_1 2 563.2779541015625 2 563.277441 1124.54033 NaN NaN NaN NaN NaN NaN NaN 29.846 1 33.604 33.104 34.104 3.7578 0 0 0 0.40738 1 4798 4798 0.79363 0 1 55166 1806 34587 34605 63410 63410 -0.016960079796717764 WYKNRHTDQW 10 Unmodified _WYKNRHTDQW_ 0 0 0 L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|19|2|sense;L1PB1_dup1104|chr2:63139201-63141077:-|1.32392972528061|0.0283575149127619|5.54|151.0|9|1|sense;L1PA16_dup5806|chr6:166963717-166964434:-|1.956752044205519|0.3053330835252035|2.68|151.0|9|2|sense;L1PB1_dup5489|chr6:161121592-161124979:-|1.5917937959659936|0.0833535010544025|4.26|151.0|101|3|sense;L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|53|3|sense;L1PA11_dup2007|chr8:70337678-70341107:+|1.8143795384436177|0.0223272870306476|6.34|150.0|96|3|sense;L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|135|2|sense;L1PA15_dup7456|chr15:94278885-94283793:-|2.6335292605949623|0.0188184920378305|7.13|151.0|56|1|sense;L1PB1_dup5004|chr6:57392681-57397716:-|2.720909769118633|0.0213317146451223|6.99|151.0|42|1|sense;L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|60|3|sense;L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|88|3|sense;L1PB4_dup593|chr2:68792263-68795977:-|9.96268775687938|0.1171059224321497|6.41|151.0|64|2|sense;L1PREC2_dup1068|chr2:241916962-241921157:+|2.096042119296518|0.1042713067729837|4.33|151.0|121|3|sense;L1PB1_dup10795|chr13:95090105-95095286:+|1.6275895628106636|0.29043736254664|2.49|151.0|153|3|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|19|2|sense L1PA16_dup11566|chr13:99249015-99250740:-|4.334175627921116|0.108101917312162|5.33|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 478.5616760253906 3 478.56182 1432.66363 -0.13915 -6.6593E-05 -0.0082447 -3.9456E-06 -0.1474 -7.0538E-05 478.5617085335041 45.773 1.2238 49.473 48.915 50.139 3.6999 102 72 2 0 0 0 0.5652 3 9496 9496;9550;9595 0.15932 0 1 142510 55167 14029 34588 34606 63411;63412;63413 63411 -0.03539376599201205 WYLKILKSI 9 Unmodified _WYLKILKSI_ 0 0 0 REV__ENSG00000144962|ENST00000351008|SPATA16 REV__ENSG00000144962|ENST00000351008|SPATA16 MSMS UPN48_class_I_Rep_1 5 582.7815551757812 2 582.362985 1162.71142 NaN NaN NaN NaN NaN NaN NaN 72.43 1 75.903 75.403 76.403 3.4732 0 0 0 0.39326 1 16998 16998 2.3027 0 1 + 55168 19500 34589 34607 63414 63414 0.13656929338935697 WYLLNNFY 8 Unmodified _WYLLNNFY_ 0 0 0 L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|81|3|anti-sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|81|3|anti-sense L1M4_dup13060|chr10:72513996-72515386:-|3.358428143347137|0.1606660716840995|4.39|151.0|81|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.7758178710938 2 566.776742 1131.53893 NaN NaN NaN NaN NaN NaN NaN 74.291 1 77.527 77.027 78.027 3.2363 0 0 0 0.40581 1 18380 18380 2.8892 0.58649 1 55169 8833 34590 34608 63415 63415 -0.021576420684368713 WYLSLGSF 8 Unmodified _WYLSLGSF_ 0 0 0 L1ME1_dup1274|chr1:110887364-110887847:-|1.2284372468014102|0.0142477985608812|6.43|151.0|28|1|anti-sense L1ME1_dup1274|chr1:110887364-110887847:-|1.2284372468014102|0.0142477985608812|6.43|151.0|28|1|anti-sense L1ME1_dup1274|chr1:110887364-110887847:-|1.2284372468014102|0.0142477985608812|6.43|151.0|28|1|anti-sense MSMS UPN46_class_I_Rep_3 1 486.7371826171875 2 486.744911 971.475269 NaN NaN NaN NaN NaN NaN NaN 36.809 1 36.809 36.309 37.309 0 0 0 0 0.39819 1 6863 6863 8.5933 0 1 55170 12205 34591 34609 63416 63416 -0.011610025055119877 WYNKKKKDK 9 Unmodified _WYNKKKKDK_ 0 0 0 REV__ENST00000295112.13_1_2:55509501-55511570:+|nuORF REV__ENST00000295112.13_1_2:55509501-55511570:+|nuORF MSMS UPN47_class_I_Rep_1 2 619.3539428710938 2 619.356222 1236.69789 NaN NaN NaN NaN NaN NaN NaN 112.51 1 116.08 115.58 116.58 3.572 0 0 0 0.4007 1 27739 27739 0.52476 0 1 + 55171 21645 34592 34610 63417 63417 0.08901071559694174 WYNWEWTFFQF 11 Unmodified _WYNWEWTFFQF_ 0 0 0 REV__L1MB5_dup112|chr1:21779574-21780553:+|1.3513547856132109|0.0139042760468645|6.6|151.0|74|3|anti-sense REV__L1MB5_dup112|chr1:21779574-21780553:+|1.3513547856132109|0.0139042760468645|6.6|151.0|74|3|anti-sense MSMS UPN46_class_I_Rep_3 1 552.130859375 3 551.910227 1652.70885 NaN NaN NaN NaN NaN NaN NaN 68.568 1 68.568 68.068 69.068 0 0 0 0 0.38417 1 15663 15663 0.094841 0.094841 1 + 55172 26030 34593 34611 63418 63418 -0.0913957085670063 WYPMALKPI 9 Unmodified _WYPMALKPI_ 0 0 0 chr1:156586045-156586469|145|15.58|0.5|4.97|+|2|TTC24,TTC24|1 chr1:156586045-156586469|145|15.58|0.5|4.97|+|2|TTC24,TTC24|1 chr1:156586045-156586469|145|15.58|0.5|4.97|+|2|TTC24,TTC24|1 MSMS UPN47_class_I_Rep_1 2 559.8052978515625 2 559.806988 1117.59942 NaN NaN NaN NaN NaN NaN NaN 83.601 1 87.139 86.639 87.639 3.5386 0 0 0 0.4007 1 20911 20911 0.52476 0.066424 1 55173 566 34594 34612 63419 63419 0.04532751990291217 WYPRLRDL 8 Unmodified _WYPRLRDL_ 0 0 0 L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|49|2|sense;L1PBa_dup1536|chr10:5783254-5784958:-|4.94935974438252|0.3381963195356199|3.87|151.0|46|3|sense;L1PB1_dup4091|chr5:60936821-60937936:-|1.706363273165733|0.0275282471475768|5.95|151.0|34|3|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|49|2|sense L1PB1_dup5227|chr6:97240927-97244374:-|2.651760995720751|0.0924844124304956|4.84|151.0|49|2|sense MSMS UPN48_class_I_Rep_1 5 559.8064575195312 2 559.808908 1117.60326 NaN NaN NaN NaN NaN NaN NaN 36.388 1 39.895 39.395 40.395 3.507 0 0 0 0.40738 1 6067 6067 0.79363 0 1 55174 15107 34595 34613 63420 63420 0.04916557808360267 WYPYFLRR 8 Unmodified _WYPYFLRR_ 0 0 0 REV__Tigger1_dup734|chr1:198164444-198166949:-|1.5035357587594504|0.0263946035041402|5.83|151.0|141|2|anti-sense REV__Tigger1_dup734|chr1:198164444-198166949:-|1.5035357587594504|0.0263946035041402|5.83|151.0|141|2|anti-sense MSMS UPN48_class_I_Rep_2 6 600.81982421875 2 600.819276 1199.624 NaN NaN NaN NaN NaN NaN NaN 41.946 1 45.703 45.203 46.203 3.7579 0 0 0 0.40738 1 7710 7710 0.79363 0.19213 1 + 55175 32523 34596 34614 63421 63421 0.03217148188014107 WYQFFLSL 8 Unmodified _WYQFFLSL_ 0 0 0 L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|285|3|anti-sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|285|3|anti-sense L1PA8_dup3384|chr6:170335040-170339506:-|1.450776565040588|0.066015738451333|4.46|151.0|285|3|anti-sense MSMS UPN48_class_I_Rep_3 7 552.2919921875 2 552.28166 1102.54877 NaN NaN NaN NaN NaN NaN NaN 68.744 1 72.253 71.753 72.753 3.5094 0 0 0 0.4044 1 15783 15783 4.756 0 1 55176 14940 34597 34615 63422 63422 0.001595459369582386 WYQFFVDL 8 Unmodified _WYQFFVDL_ 0 0 0 L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|423|3|anti-sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|423|3|anti-sense L1PB4_dup583|chr2:63180200-63186886:-|5.336481870573898|0.1276921304095379|5.39|151.0|423|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.2706909179688 2 559.271293 1116.52803 0.48725 0.0002725 -0.7978 -0.00044618 -0.31055 -0.00017368 559.2707350690498 71.142 0.34691 74.692 74.455 74.802 3.5505 55 39 2 0 0 0 0.82752 1 16575 16575 0.69038 0 1 190830 55177 15332 34598 34616 63423 63423 -0.025570444427330585 WYQKSYYH 8 Unmodified _WYQKSYYH_ 0 0 0 REV__L1MA3_dup7706|chr15:44700602-44701372:-|1.1576492095995667|0.0175002187506221|6.05|151.0|15|2|sense REV__L1MA3_dup7706|chr15:44700602-44701372:-|1.1576492095995667|0.0175002187506221|6.05|151.0|15|2|sense MSMS UPN47_class_I_Rep_3 4 587.7670288085938 2 587.769448 1173.52434 NaN NaN NaN NaN NaN NaN NaN 25.885 1 29.233 28.733 29.733 3.3478 0 0 0 0.40746 1 3707 3707 0.69038 0 1 + 55178 25106 34599 34617 63424 63424 -0.055477142165727855 WYQNRYVH 8 Unmodified _WYQNRYVH_ 0 0 0 L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|39|1|sense L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|39|1|sense L1PA6_dup3009|chr8:11814869-11821002:-|3.5596778129059983|0.3314534040608437|3.42|151.0|39|1|sense MSMS UPN47_class_I_Rep_1 2 583.2814331054688 2 583.280515 1164.54648 NaN NaN NaN NaN NaN NaN NaN 76.352 1 79.767 79.267 80.267 3.4149 0 0 0 0.40746 1 18890 18890 0.69038 0.088878 1 55179 14603 34600 34618 63425 63425 -0.029214897481551816 WYRDPFNK 8 Unmodified _WYRDPFNK_ 0 0 0 L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|76|3|sense L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|76|3|sense L1PA10_dup1058|chr3:28273188-28276122:-|2.824958721232339|0.055822797880317|5.66|151.0|76|3|sense MSMS UPN47_class_I_Rep_2 3 563.2764892578125 2 563.277441 1124.54033 NaN NaN NaN NaN NaN NaN NaN 48.752 1 52.098 51.598 52.598 3.3465 0 0 0 0.40746 1 10567 10567 0.69038 0 1 55180 13572 34601 34619 63426 63426 -0.016960079796717764 WYRHQWRRRWS 11 Unmodified _WYRHQWRRRWS_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS UPN46_class_I_Rep_3 1 573.2997436523438 3 572.962541 1715.86579 NaN NaN NaN NaN NaN NaN NaN 57.844 1 57.844 57.344 58.344 0 0 0 0 0.38417 1 12699 12699 0 0 1 + 55181 23033 34602 34620 63427 63427 0.036495715968612785 WYRHQWRRRWS 11 Unmodified _WYRHQWRRRWS_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 572.2875366210938 3 572.962541 1715.86579 0.43494 0.0002492 -4.2622 -0.0024421 -3.8273 -0.0021929 572.9608933869998 54.075 0.46507 57.59 57.274 57.739 3.5143 42 33 2 0 0 0 22.551 1 11347 11347 0.08335 0.08335 1 270610 + 55182 23033 34602 34620 63428 63428 0.036495715968612785 WYRHQWRRRWS 11 Unmodified _WYRHQWRRRWS_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 3 572.962541 1715.86579 0.32446 0.0001859 -3.2055 -0.0018366 -2.881 -0.0016507 573.2946388131386 54.211 0.31694 57.781 57.668 57.985 3.5694 0.095542 0.00052587 NaN 0.08335 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 161620 + 55183 23033 34602 34620 0.036495715968612785 WYRKKGTR 8 Unmodified _WYRKKGTR_ 0 0 0 REV__nc|ENSG00000159917|Q14590-2|ZNF235 REV__nc|ENSG00000159917|Q14590-2|ZNF235 MSMS UPN48_class_I_Rep_2 6 547.7371826171875 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 18.234 1 21.885 21.385 22.385 3.6509 0 0 0 0.40625 1 1189 1189 2.3027 0.4585 1 + 55184 19874 34603 34621 63429 63429 0.07143379902504421 WYRLRLIHL 9 Unmodified _WYRLRLIHL_ 0 0 0 REV__L1MEg_dup12201|chr15:50091835-50094029:+|3.130046134750743|0.0048361767732893|9.34|151.0|144|3|anti-sense REV__L1MEg_dup12201|chr15:50091835-50094029:+|3.130046134750743|0.0048361767732893|9.34|151.0|144|3|anti-sense MSMS UPN48_class_I_Rep_3 7 635.3851318359375 2 635.382574 1268.7506 NaN NaN NaN NaN NaN NaN NaN 70.341 1 73.86 73.36 74.36 3.5185 0 0 0 0.4007 1 16272 16272 0.52476 0.066424 1 + 55185 28720 34604 34622 63430 63430 0.12697074413154041 WYRNRDIEQW 10 Unmodified _WYRNRDIEQW_ 0 0 0 L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|36|1|sense L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|36|1|sense L1PA4_dup5685|chr8:47316970-47323101:+|4.66771250355857|0.3207200708839067|3.86|151.0|36|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 489.23773193359375 3 489.237225 1464.68985 -0.2075 -0.00010152 0.10745 5.2567E-05 -0.10005 -4.8949E-05 489.23717648878596 42.495 1.7418 46.174 45.549 47.29 3.6792 198 114 3 0 0 0 0.84575 1 8876 8876 0.15932 0.064481 1 166060 55186 14367 34605 34623 63431 63431 -0.02391107427752104 WYRPTGLH 8 Unmodified _WYRPTGLH_ 0 0 0 REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF MSMS UPN47_class_I_Rep_2 3 515.2466430664062 2 515.266876 1028.5192 NaN NaN NaN NaN NaN NaN NaN 29.37 1 32.862 32.362 33.362 3.4923 0 0 0 0.40746 1 4693 4693 0.69038 0 1 + 55187 22467 34606 34624 63432 63432 0.00608026711461207 WYRSQQITH 9 Unmodified _WYRSQQITH_ 0 0 0 REV__L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|31|3|sense REV__L1MA4A_dup257|chr1:145807560-145808564:-|2.0402413710468648|0.0347003193677188|5.88|151.0|31|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 406.8719482421875 3 406.871995 1217.59415 -0.098435 -4.0051E-05 0.11308 4.6009E-05 0.014644 5.9583E-06 406.8720027090135 34.286 1.173 34.286 33.963 35.136 0 219 85 4 0 0 0 0.36258 2 6137 6097;6137 10.151 10.151 1 619530 + 55188 25253 34607 34625 63433;63434 63434 -0.0059383554796568205 WYSEDEWL 8 Unmodified _WYSEDEWL_ 0 0 0 REV__ENST00000448841.5_1_10:104573393-104573648:+|nuORF REV__ENST00000448841.5_1_10:104573393-104573648:+|nuORF MSMS UPN47_class_I_Rep_1 2 564.2742309570312 2 564.237647 1126.46074 NaN NaN NaN NaN NaN NaN NaN 118.73 1 122.34 121.84 122.84 3.6036 0 0 0 0.40738 1 29476 29476 0.79363 0 1 + 55189 22375 34608 34626 63435 63435 -0.0974311944432884 WYSIKEKYPQF 11 Unmodified _WYSIKEKYPQF_ 0 0 0 Charlie1a_dup1382|chr4:2606350-2607474:-|1.3262517890393477|0.0150911774682031|6.46|151.0|9|1|sense Charlie1a_dup1382|chr4:2606350-2607474:-|1.3262517890393477|0.0150911774682031|6.46|151.0|9|1|sense Charlie1a_dup1382|chr4:2606350-2607474:-|1.3262517890393477|0.0150911774682031|6.46|151.0|9|1|sense MSMS UPN46_class_I_Rep_3 1 496.76959228515625 3 496.922244 1487.7449 NaN NaN NaN NaN NaN NaN NaN 74.436 1 74.436 73.936 74.936 0 0 0 0 0.38417 1 17271 17271 1.3296 0 1 55190 458 34609 34627 63436 63436 0.02053886320163656 WYSTFVHF 8 Unmodified _WYSTFVHF_ 0 0 0 L1MD1_dup5592|chr15:56212705-56213772:+|1.719985029875749|0.018018782597297|6.58|150.0|7|1|sense L1MD1_dup5592|chr15:56212705-56213772:+|1.719985029875749|0.018018782597297|6.58|150.0|7|1|sense L1MD1_dup5592|chr15:56212705-56213772:+|1.719985029875749|0.018018782597297|6.58|150.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 543.743408203125 2 543.75581 1085.49707 NaN NaN NaN NaN NaN NaN NaN 26.892 1 30.658 30.158 31.158 3.7662 0 0 0 0.40738 1 3917 3917 0.79363 0 1 55191 11959 34610 34628 63437 63437 -0.04226197756975125 WYSYCYNY 8 Unmodified _WYSYCYNY_ 0 0 0 REV__ENST00000419523.1_1_2:131032269-131032449:+|nuORF REV__ENST00000419523.1_1_2:131032269-131032449:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 581.7799072265625 2 581.220943 1160.42733 0.045068 2.6195E-05 -0.56379 -0.00032769 -0.51872 -0.00030149 581.2203866849547 40.155 0.36551 43.527 43.336 43.701 3.3712 33 23 2 0 0 0 0.72333 1 7935 7935 2.5775 0.27475 1 58468 + 55192 22239 34611 34629 63438 63438 -0.14646444487880217 WYSYFGKVW 9 Unmodified _WYSYFGKVW_ 0 0 0 L1MB7_dup17562|chr14:75060264-75060783:+|1.8739230432510223|0.3433789260540611|2.45|150.0|14|3|sense L1MB7_dup17562|chr14:75060264-75060783:+|1.8739230432510223|0.3433789260540611|2.45|150.0|14|3|sense L1MB7_dup17562|chr14:75060264-75060783:+|1.8739230432510223|0.3433789260540611|2.45|150.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 618.2990112304688 2 618.297842 1234.58113 NaN NaN NaN NaN NaN NaN NaN 30.329 1 33.871 33.371 34.371 3.542 0 0 0 0.39598 1 4337 4337 1.6526 0.17072 1 55193 10743 34612 34630 63439 63439 -0.026776666600653698 WYTPVVPAPT 10 Unmodified _WYTPVVPAPT_ 0 0 0 AluJb_dup88549|chr13:28193461-28193756:+|1.6378885642205516|0.0167780036526777|6.61|151.0|3|1|sense AluJb_dup88549|chr13:28193461-28193756:+|1.6378885642205516|0.0167780036526777|6.61|151.0|3|1|sense AluJb_dup88549|chr13:28193461-28193756:+|1.6378885642205516|0.0167780036526777|6.61|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 565.7998657226562 2 565.797675 1129.5808 NaN NaN NaN NaN NaN NaN NaN 17.541 1 21.092 20.592 21.592 3.5504 0 0 0 0.53105 1 1324 1324 1.4819 0.79152 1 55194 80 34613 34631 63440 63440 0.02118913620074636 WYTYLYLFT 9 Unmodified _WYTYLYLFT_ 0 0 0 L1MC1_dup5700|chr6:166376677-166377127:-|1.0357766311442755|0.2287648934641704|2.18|151.0|24|2|anti-sense L1MC1_dup5700|chr6:166376677-166377127:-|1.0357766311442755|0.2287648934641704|2.18|151.0|24|2|anti-sense L1MC1_dup5700|chr6:166376677-166377127:-|1.0357766311442755|0.2287648934641704|2.18|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_1 5 635.3123779296875 2 635.313158 1268.61176 NaN NaN NaN NaN NaN NaN NaN 45.151 1 48.667 48.167 49.167 3.5162 0 0 0 0.4007 1 8677 8677 0.52476 0 1 55195 11170 34614 34632 63441 63441 -0.011799330656913298 WYVFAVPVT 9 Unmodified _WYVFAVPVT_ 0 0 0 L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|128|3|anti-sense L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|128|3|anti-sense L1PA8_dup2169|chr4:129053591-129056242:-|6.534134120128238|0.106105155824736|5.94|151.0|128|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.289794921875 2 541.289485 1080.56442 NaN NaN NaN NaN NaN NaN NaN 30.364 1 33.906 33.406 34.406 3.542 0 0 0 0.39326 1 4348 4348 2.3027 0.82083 1 55196 14930 34615 34633 63442 63442 0.027358324540045942 WYVNILIKL 9 Unmodified _WYVNILIKL_ 0 0 0 L1MB8_dup4041|chr4:118615727-118616343:-|1.455404146520154|0.1312400318963717|3.47|150.0|22|3|sense L1MB8_dup4041|chr4:118615727-118616343:-|1.455404146520154|0.1312400318963717|3.47|150.0|22|3|sense L1MB8_dup4041|chr4:118615727-118616343:-|1.455404146520154|0.1312400318963717|3.47|150.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 581.7874755859375 2 581.35516 1160.69577 NaN NaN NaN NaN NaN NaN NaN 28.995 1 32.752 32.252 33.252 3.7578 0 0 0 0.4007 1 4543 4543 0.52476 0 1 55197 11003 34616 34634 63443 63443 0.12184642821898706 WYWDNQLA 8 Unmodified _WYWDNQLA_ 0 0 0 L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|69|3|sense L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|69|3|sense L1PA14_dup1050|chr5:40703933-40706490:+|1.3756242681187598|0.0684806013920961|4.33|151.0|69|3|sense MSMS UPN48_class_I_Rep_1 5 548.2488403320312 2 548.248349 1094.48214 NaN NaN NaN NaN NaN NaN NaN 27.054 1 30.616 30.116 31.116 3.5629 0 0 0 0.40738 1 3423 3423 0.79363 0.10326 1 55198 13808 34617 34635 63444 63444 -0.06131689624953651 WYYAHYLD 8 Unmodified _WYYAHYLD_ 0 0 0 L1PA16_dup6772|chr8:55932761-55933123:+|1.8351090486220731|0.028267406313367|6.02|151.0|9|2|sense L1PA16_dup6772|chr8:55932761-55933123:+|1.8351090486220731|0.028267406313367|6.02|151.0|9|2|sense L1PA16_dup6772|chr8:55932761-55933123:+|1.8351090486220731|0.028267406313367|6.02|151.0|9|2|sense MSMS UPN47_class_I_Rep_2 3 565.74951171875 2 565.750724 1129.4869 NaN NaN NaN NaN NaN NaN NaN 27.244 1 30.743 30.243 31.243 3.4986 0 0 0 0.40604 1 4061 4061 2.5775 0.27475 1 55199 14114 34618 34636 63445 63445 -0.072668054821861 WYYDGPLL 8 Unmodified _WYYDGPLL_ 0 0 0 HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|173|3|sense HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|173|3|sense HERVIP10FH-int_dup118|chr6:88725122-88730135:+|1.5649899642410228|0.0292455957559988|5.74|151.0|173|3|sense MSMS UPN47_class_I_Rep_3 4 513.7499389648438 2 513.750193 1025.48583 NaN NaN NaN NaN NaN NaN NaN 26.906 1 30.248 29.748 30.748 3.3422 0 0 0 0.40604 1 4007 4007 2.5775 0 1 55200 8215 34619 34637 63446 63446 -0.025890198510978735 WYYFNFLFCFS 11 Unmodified _WYYFNFLFCFS_ 0 0 0 REV__L1ME3B_dup373|chr1:160299628-160300057:+|1.1350647858963312|0.2655602899454822|2.1|150.0|24|1|anti-sense REV__L1ME3B_dup373|chr1:160299628-160300057:+|1.1350647858963312|0.2655602899454822|2.1|150.0|24|1|anti-sense MSMS UPN46_class_I_Rep_3 1 512.8938598632812 3 512.893408 1535.65839 NaN NaN NaN NaN NaN NaN NaN 75.106 1 75.106 74.606 75.606 0 0 0 0 0.38417 1 17444 17444 0.094841 0 1 + 55201 28054 34620 34638 63447 63447 -0.08800816506050069 YAAAQLRQY 9 Unmodified _YAAAQLRQY_ 0 0 0 nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2 nc|ENSG00000117614|O95926-2|SYF2 nc|ENSG00000117614|O95926-2|SYF2 MSMS UPN48_class_I_Rep_2 6 542.2950439453125 2 542.282723 1082.55089 NaN NaN NaN NaN NaN NaN NaN 48.164 1 51.9 51.4 52.4 3.7361 0 0 0 0.35339 1 9593 9593 7.9102 0 1 55202 2226 34621 34639 63448 63448 0.012919746747684258 YAAIKKKR 8 Unmodified _YAAIKKKR_ 0 0 0 L1PA13_dup5199|chrX:72404984-72405659:-|2.0401016239981398|0.0113409681054681|7.49|151.0|12|2|sense L1PA13_dup5199|chrX:72404984-72405659:-|2.0401016239981398|0.0113409681054681|7.49|151.0|12|2|sense L1PA13_dup5199|chrX:72404984-72405659:-|2.0401016239981398|0.0113409681054681|7.49|151.0|12|2|sense MSMS UPN48_class_I_Rep_3 7 489.3153991699219 2 489.316369 976.618185 NaN NaN NaN NaN NaN NaN NaN 86.982 1 90.772 90.272 91.272 3.7905 0 0 0 0.40738 1 20637 20637 0.79363 0.10326 1 55203 13768 34622 34640 63449 63449 0.12894049676367558 YAAKLVTV 8 Unmodified _YAAKLVTV_ 0 0 0 REV__LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|70|3|anti-sense REV__LTR12C_dup2577|chr20:31577586-31579115:-|1.3830038419623665|0.214527744503904|2.69|151.0|70|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 432.8851013183594 2 432.763104 863.511654 -0.3272 -0.0001416 0.17521 7.5823E-05 -0.15199 -6.5776E-05 432.76310447054544 54.048 0.69353 57.367 56.934 57.628 3.3187 81 42 3 0 0 0 0.72333 1 12256 12256 4.3292 0 1 102480 + 55204 30817 34623 34641 63450 63450 0.07443874391196914 YAALKRVF 8 Unmodified _YAALKRVF_ 0 0 0 REV__ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|131|1|anti-sense REV__ERVL-B4-int_dup2226|chrX:55744405-55747805:-|1.642632772225811|0.4715370304710483|1.8|151.0|131|1|anti-sense MSMS UPN47_class_I_Rep_2 3 484.2887878417969 2 484.28982 966.565087 NaN NaN NaN NaN NaN NaN NaN 40.317 1 43.688 43.188 44.188 3.3712 0 0 0 0.40604 1 8014 8014 2.5775 0 1 + 55205 23257 34624 34642 63451 63451 0.08046671893703206 YAALLLQIQ 9 Unmodified _YAALLLQIQ_ 0 0 0 REV__L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|68|3|anti-sense REV__L1M4a1_dup290|chr2:31894893-31895837:+|1.5751018427953851|0.06336994745483|4.64|151.0|68|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.8067016601562 2 516.808042 1031.60153 0.34892 0.00018033 0.25404 0.00013129 0.60296 0.00031161 516.8081881575782 89.342 0.17351 93.08 92.993 93.166 3.7379 23 16 2 0 0 0 0.33654 1 21298 21298 11.64 2.2572 1 153410 + 55206 24491 34625 34643 63452 63452 0.08699503999764602 YAANPGQLF 9 Unmodified _YAANPGQLF_ 0 0 0 ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 MULTI-MSMS UPN48_class_I_Rep_1 5 490.74560546875 2 490.745442 979.476331 0.32056 0.00015731 -0.19877 -9.7548E-05 0.12179 5.9766E-05 490.7453522198317 61.242 0.49886 64.71 64.421 64.92 3.4678 56 45 2 0 0 0 0.41259 1 13561 13561 7.2892 0 1 98579 55207 4353 34626 34644 63453 63453 -0.014227881366196016 YAANPGQLF 9 Unmodified _YAANPGQLF_ 0 0 0 ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 490.745442 979.476331 0.24097 0.00011826 -0.20378 -0.0001 0.037191 1.8251E-05 490.7453258470541 61.047 0.47127 64.56 64.343 64.815 3.5128 -0.07516 -3.2434E-06 NaN 7.2892 58 40 2 NaN NaN NaN NaN 0 NaN NaN 0 92391 55208 4353 34626 34644 -0.014227881366196016 YAASTEFFPCS 11 Unmodified _YAASTEFFPCS_ 0 0 0 REV__nc|ENSG00000143622|Q92963-2|RIT1 REV__nc|ENSG00000143622|Q92963-2|RIT1 MULTI-MSMS UPN48_class_I_Rep_1 5 611.7578125 2 611.757889 1221.50123 0.57912 0.00035428 -0.33042 -0.00020213 0.24871 0.00015215 611.7575960941122 61.709 0.70122 65.177 64.831 65.533 3.4678 97 64 2 0 0 0 0.32821 1 13736 13736 13.042 0.80181 1 570940 + 55209 19457 34627 34645 63454 63454 -0.10066521116209515 YAAWWRTLP 9 Unmodified _YAAWWRTLP_ 0 0 0 L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|250|1|anti-sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|250|1|anti-sense L1PA11_dup3304|chr13:50855871-50862066:+|1.2636865540270334|0.0858998225209959|3.88|151.0|250|1|anti-sense MSMS UPN46_class_I_Rep_3 1 582.3037109375 2 582.303458 1162.59236 NaN NaN NaN NaN NaN NaN NaN 102.77 1 102.77 102.27 103.27 0 0 0 0 0.40038 1 25082 25082 0.6015 0 1 55210 13674 34628 34646 63455 63455 0.017571554340747753 YADAYQDLY 9 Unmodified _YADAYQDLY_ 0 0 0 ENST00000548860.5_1_12:49218876-49221679:+|nuORF;nc|ENSG00000167535|P54284-5|CACNB3;nc|ENSG00000167535|P54284-2|CACNB3;nc|ENSG00000167535|P54284-3|CACNB3;nc|ENSG00000167535|P54284-4|CACNB3;ENSG00000167535|ENST00000301050|CACNB3 ENST00000548860.5_1_12:49218876-49221679:+|nuORF ENST00000548860.5_1_12:49218876-49221679:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 561.259521484375 2 561.242929 1120.47131 0.39467 0.00022151 0.096114 5.3943E-05 0.49078 0.00027545 561.2429590473558 68.622 0.53352 71.892 71.675 72.209 3.2696 84 47 2 0 0 0 0.43153 1 16693 16693 6.2058 0 1 126750 55211 4311 34629 34647 63456 63456 -0.08411136789891316 YADLSLKY 8 Unmodified _YADLSLKY_ 0 0 0 ENST00000436507.2_1_9:37885847-37886384:+|nuORF;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2 ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENST00000436507.2_1_9:37885847-37886384:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 486.7554626464844 2 486.755475 971.496398 0.22664 0.00011032 -0.22198 -0.00010805 0.0046618 2.2692E-06 486.75531452034886 49.706 0.48771 53.049 52.884 53.372 3.3431 40 29 2 0 0 0 0.82752 1 10865 10865 14.838 2.3067 1 72412 55212 5595 34630 34648 63457 63457 0.009509628033242734 YADLSLKY 8 Unmodified _YADLSLKY_ 0 0 0 ENST00000436507.2_1_9:37885847-37886384:+|nuORF;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2 ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENST00000436507.2_1_9:37885847-37886384:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 486.755475 971.496398 0.18559 9.0337E-05 -0.062588 -3.0465E-05 0.123 5.9872E-05 486.75538688220246 49.817 0.51118 53.044 52.791 53.303 3.2262 -0.0025359 8.1329E-05 NaN 14.838 39 29 2 NaN NaN NaN NaN 0 NaN NaN 0 47173 55213 5595 34630 34648 0.009509628033242734 YADPVNAHY 9 Unmodified _YADPVNAHY_ 0 0 0 nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 MULTI-MSMS UPN47_class_I_Rep_1 2 525.237548828125 2 525.237981 1048.46141 -0.10283 -5.4012E-05 -0.16632 -8.7359E-05 -0.26916 -0.00014137 525.2377893852168 37.106 0.78382 40.776 40.47 41.254 3.6692 131 60 3 0 0 0 0.066633 7 7007 6925;6933;6965;7007;7045;7084;7123 41.84 27.934 1 295320 55214 2277 34631 34649 63458;63459;63460;63461;63462;63463;63464 63461 -0.060882800046329066 YADPVNAHY 9 Unmodified _YADPVNAHY_ 0 0 0 nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 MULTI-MSMS UPN47_class_I_Rep_2 3 525.23779296875 2 525.237981 1048.46141 -0.3084 -0.00016199 0.003531 1.8546E-06 -0.30487 -0.00016013 525.2378548200794 37.394 0.75126 40.793 40.463 41.214 3.3988 126 56 3 0 0 0 0.097406 4 7147 7058;7097;7147;7194 34.402 18.555 1 270200 55215 2277 34631 34649 63465;63466;63467;63468 63467 -0.060882800046329066 YADPVNAHY 9 Unmodified _YADPVNAHY_ 0 0 0 nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-7|PTBP3 MULTI-MSMS UPN47_class_I_Rep_3 4 525.2376708984375 2 525.237981 1048.46141 -0.16732 -8.7885E-05 0.1674 8.7924E-05 7.4726E-05 3.9249E-08 525.2377818891267 37.46 0.91433 40.707 40.404 41.319 3.247 140 65 3 0 0 0 0.074399 5 7185 7103;7141;7185;7224;7263 39.95 27.709 1 291500 55216 2277 34631 34649 63469;63470;63471;63472;63473 63471 -0.060882800046329066 YADVGGKQF 9 Unmodified _YADVGGKQF_ 0 0 0 ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4 ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000460616.5_1_X:153061851-153063636:+|nuORF MSMS UPN48_class_I_Rep_1 5 492.74261474609375 2 492.742899 983.471246 NaN NaN NaN NaN NaN NaN NaN 34.058 1 37.578 37.078 38.078 3.5201 0 0 0 0.37891 1 5399 5399 5.7319 1.4026 1 55217 4901 34632 34650 63474 63474 -0.021150919992237505 YADVTDEEEY 10 Unmodified _YADVTDEEEY_ 0 0 0 ENST00000592333.1_1_17:42759339-42767103:-|nuORF ENST00000592333.1_1_17:42759339-42767103:-|nuORF ENST00000592333.1_1_17:42759339-42767103:-|nuORF MSMS UPN47_class_I_Rep_2 3 617.2439575195312 2 617.243323 1232.47209 NaN NaN NaN NaN NaN NaN NaN 44.036 1 47.394 46.894 47.894 3.358 0 0 0 0.53105 1 9143 9143 0 0 1 55218 7628 34633 34651 63475 63475 -0.1348438693148637 YAEFKNIT 8 Unmodified _YAEFKNIT_ 0 0 0 ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM ENSG00000188419|ENST00000357749|CHM MULTI-MSMS UPN48_class_I_Rep_3 7 493.2532653808594 2 493.2531 984.491647 0.30138 0.00014866 -0.010712 -5.2837E-06 0.29067 0.00014337 493.25302664622495 71.723 0.5875 75.25 74.971 75.558 3.5266 78 56 2 0 0 0 0.82752 1 16609 16609 5.7319 1.4026 1 191080 55219 5232 34634 34652 63476 63476 -0.0012192133942789951 YAELMKMC 8 Unmodified _YAELMKMC_ 0 0 0 ENSG00000233802|ENST00000623787|TRIM49D2;ENSG00000223417|ENST00000420869|TRIM49D1 ENSG00000233802|ENST00000623787|TRIM49D2 ENSG00000233802|ENST00000623787|TRIM49D2 MSMS UPN47_class_I_Rep_2 3 494.7176208496094 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 28.411 1 31.909 31.409 32.409 3.4986 0 0 0 0.40746 1 4404 4404 0.69038 0 1 55220 5651 34635 34653 63477 63477 -0.07143368226650182 YAENHELLEL 10 Unmodified _YAENHELLEL_ 0 0 0 REV__ENSG00000141447|ENST00000319481|OSBPL1A REV__ENSG00000141447|ENST00000319481|OSBPL1A MSMS UPN48_class_I_Rep_1 5 616.283935546875 2 615.803685 1229.59282 NaN NaN NaN NaN NaN NaN NaN 64.133 1 67.591 67.091 68.091 3.4578 0 0 0 0.53105 1 14494 14494 1.6526 0 1 + 55221 19376 34636 34654 63478 63478 -0.012795144273695769 YAESTVFML 9 Unmodified _YAESTVFML_ 0 0 0 Tigger1_dup114|chr1:32114453-32114852:-|1.0903001404393804|0.0035762024597888|8.25|151.0|14|3|sense Tigger1_dup114|chr1:32114453-32114852:-|1.0903001404393804|0.0035762024597888|8.25|151.0|14|3|sense Tigger1_dup114|chr1:32114453-32114852:-|1.0903001404393804|0.0035762024597888|8.25|151.0|14|3|sense MSMS UPN48_class_I_Rep_1 5 530.7569580078125 2 530.754618 1059.49468 NaN NaN NaN NaN NaN NaN NaN 32.167 1 35.694 35.194 36.194 3.5266 0 0 0 0.35339 1 4856 4856 7.9102 2.1497 1 55222 33015 34637 34655 63479 63479 -0.032684142769085156 YAEVGRVL 8 Unmodified _YAEVGRVL_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|1|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|3|intron;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|4|intron;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|5|intron ENSG00000131503|ENST00000360839|ANKHD1;ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron ENSG00000132466.19,ANKRD17,chr4,-,I29.1,73101174,73102375|23|7.89|2|intron MULTI-MSMS UPN46_class_I_Rep_3 1 453.7557678222656 2 453.75581 905.497067 0.16439 7.4594E-05 -0.18039 -8.1854E-05 -0.016001 -7.2606E-06 453.75568403993833 45.324 0.56358 45.324 45.109 45.672 0 70 51 2 0 0 0 0.82752 1 9246 9246 36.127 0 1 364140 55223 2756;2715 34638 34656 63480 63480 0.04053802243049631 YAFALKKP 8 Unmodified _YAFALKKP_ 0 0 0 REV__ENSG00000265808|ENST00000578049|SEC22B REV__ENSG00000265808|ENST00000578049|SEC22B MSMS UPN48_class_I_Rep_1 5 469.279296875 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 37.616 1 41.121 40.621 41.621 3.5052 0 0 0 0.40738 1 6416 6416 0.79363 0 1 + 55224 21405 34639 34657 63481 63481 0.07247867145144937 YAFFFFFA 8 Unmodified _YAFFFFFA_ 0 0 0 Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|11|2|sense Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|11|2|sense Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 530.2510986328125 2 530.252372 1058.49019 -0.15981 -8.4739E-05 -1.1541 -0.00061196 -1.3139 -0.0006967 530.251587250146 14.421 0.38524 17.896 17.806 18.191 3.475 71 45 2 0 0 0 0.82752 1 598 598 2.8892 0.58649 1 66684 55225 32827 34640 34658 63482 63482 -0.03671510637514075 YAFFFFFA 8 Unmodified _YAFFFFFA_ 0 0 0 Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|11|2|sense Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|11|2|sense Ricksha_0_dup8|chr1:44530089-44530682:-|5.982165092360219|0.0015222641040096|11.94|151.0|11|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.2517700195312 2 530.252372 1058.49019 -0.47968 -0.00025435 -0.78726 -0.00041745 -1.2669 -0.0006718 530.2518110196295 14.607 0.35047 17.977 17.854 18.205 3.3697 57 41 2 0 0 0 0.82752 1 615 615 2.8892 0.58649 1 50529 55226 32827 34640 34658 63483 63483 -0.03671510637514075 YAFGFSVCLY 10 Unmodified _YAFGFSVCLY_ 0 0 0 REV__L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|44|1|anti-sense REV__L1ME1_dup569|chr1:50641132-50641920:-|2.4224473662748496|0.0183162412866774|7.05|151.0|44|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 584.8169555664062 2 585.270435 1168.52632 0.44544 0.0002607 2.4597 0.0014396 2.9051 0.0017003 585.2718607220963 69.078 0.11283 72.282 72.194 72.307 3.2044 11 8 2 0 0 0 0.84575 1 16830 16830 6.7232 2.3939 1 31039 + 55227 27782 34641 34659 63484 63484 -0.05120421522974539 YAFIYKNY 8 Unmodified _YAFIYKNY_ 0 0 0 REV__L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|1|1|sense REV__L1MC5a_dup11449|chr11:76475945-76477572:-|1.300430480862524|0.0487180977145002|4.74|150.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 541.2691040039062 2 541.271293 1080.52803 NaN NaN NaN NaN NaN NaN NaN 32.257 1 35.907 35.407 36.407 3.6497 0 0 0 0.40404 1 4961 4961 5.2307 0 1 + 55228 27109 34642 34660 63485 63485 -0.00901044442730381 YAFLHRTL 8 Unmodified _YAFLHRTL_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MSMS UPN47_class_I_Rep_1 2 510.78472900390625 2 510.784902 1019.55525 NaN NaN NaN NaN NaN NaN NaN 42.38 1 46.059 45.559 46.559 3.6792 0 0 0 0.38667 1 8609 8609 13.042 3.695 1 55229 2589 34643 34661 63486 63486 0.046254838883328375 YAFLHRTL 8 Unmodified _YAFLHRTL_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MSMS UPN47_class_I_Rep_1 2 510.7632751464844 2 510.784902 1019.55525 NaN NaN NaN NaN NaN NaN NaN 42.456 1 46.135 45.635 46.635 3.6792 0 0 0 0.39615 1 8632 8632 9.3831 2.66 1 55230 2589 34643 34661 63487 63487 0.046254838883328375 YAFLHRTL 8 Unmodified _YAFLHRTL_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MSMS UPN47_class_I_Rep_2 3 510.78515625 2 510.784902 1019.55525 NaN NaN NaN NaN NaN NaN NaN 43.099 1 46.457 45.957 46.957 3.358 0 0 0 0.39242 1 8856 8856 10.824 3.5347 1 55231 2589 34643 34661 63488 63488 0.046254838883328375 YAFLNKTY 8 Unmodified _YAFLNKTY_ 0 0 0 RBM44|p.C205Lfs*6|1|0.18|ENSG00000177483|chr2:237827309-237827310|-/T|frameshift_variant;ENSG00000177483|ENST00000316997|RBM44 RBM44|p.C205Lfs*6|1|0.18|ENSG00000177483|chr2:237827309-237827310|-/T|frameshift_variant RBM44|p.C205Lfs*6|1|0.18|ENSG00000177483|chr2:237827309-237827310|-/T|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_1 2 510.78485107421875 2 510.263468 1018.51238 -0.12306 -6.2792E-05 -0.70188 -0.00035814 -0.82494 -0.00042094 510.2641430703154 42.405 0.13387 46.084 45.998 46.132 3.6792 13 10 2 0 0 0 0.72333 1 8615 8615 9.3474 0 1 41558 55232 4793 34644 34662 63489 63489 0.0038666904022193194 YAFNIFWA 8 Unmodified _YAFNIFWA_ 0 0 0 L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|85|2|anti-sense L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|85|2|anti-sense L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|85|2|anti-sense MSMS UPN48_class_I_Rep_2 6 516.2535400390625 2 516.252903 1030.49125 NaN NaN NaN NaN NaN NaN NaN 29.74 1 33.372 32.872 33.872 3.6316 0 0 0 0.40738 1 4264 4264 0.79363 0 1 55233 11592 34645 34663 63490 63490 -0.0227729626863038 YAFVHFQN 8 Unmodified _YAFVHFQN_ 0 0 0 ENSG00000254535|ENST00000421491|PABPC4L ENSG00000254535|ENST00000421491|PABPC4L ENSG00000254535|ENST00000421491|PABPC4L MULTI-MSMS UPN48_class_I_Rep_1 5 513.2450561523438 2 513.245609 1024.47667 0.32861 0.00016866 -0.47437 -0.00024347 -0.14576 -7.4811E-05 513.2453465142553 65.949 0.25266 69.401 69.339 69.591 3.4516 19 15 2 0 0 0 0.82752 1 15048 15048 13.508 13.508 1 70380 55234 5755 34646 34664 63491 63491 -0.03459368416747566 YAFVIVVF 8 Unmodified _YAFVIVVF_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MSMS UPN48_class_I_Rep_1 5 479.2767333984375 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 73.965 1 77.446 76.946 77.946 3.4812 0 0 0 0.40581 1 17460 17460 2.8892 0.31174 1 + 55235 20313 34647 34665 63492 63492 0.05713348913604932 YAGLHRALLE 10 Unmodified _YAGLHRALLE_ 0 0 0 REV__CON__Q3T052 REV__CON__Q3T052 MSMS UPN48_class_I_Rep_3 7 571.8380737304688 2 571.819473 1141.62439 NaN NaN NaN NaN NaN NaN NaN 42.589 1 46.23 45.73 46.73 3.6415 0 0 0 0.53105 1 7821 7821 3.9444 0.66309 1 + + 55236 17498 34648 34666 63493 63493 0.05924523117255376 YAGVPLHL 8 Unmodified _YAGVPLHL_ 0 0 0 REV__L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|123|3|anti-sense REV__L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|123|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 435.2470703125 2 435.247621 868.480688 -0.055433 -2.4127E-05 0.49805 0.00021677 0.44262 0.00019265 435.2471280011722 99.777 0.66798 103.38 102.9 103.57 3.6065 177 86 3 0 0 0 0.72333 1 24020 24020 2.8892 2.0956 1 228180 + 55237 28123 34649 34667 63494 63494 0.04118721076940801 YAGVPLHL 8 Unmodified _YAGVPLHL_ 0 0 0 REV__L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|123|3|anti-sense REV__L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|123|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 435.247621 868.480688 -0.17365 -7.558E-05 -0.77212 -0.00033607 -0.94577 -0.00041164 435.2471173795318 99.878 0.23807 103.38 103.19 103.42 3.4974 -0.099953 -0.00012379 NaN 2.8892 44 31 2 NaN NaN NaN NaN 0 NaN NaN 0 104490 + 55238 28123 34649 34667 0.04118721076940801 YAGVPLHL 8 Unmodified _YAGVPLHL_ 0 0 0 REV__L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|123|3|anti-sense REV__L1ME3Cz_dup5190|chr7:44408561-44410381:+|1.8664581832875933|0.1175072894486119|3.99|151.0|123|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 435.247621 868.480688 -0.34336 -0.00014945 -0.69434 -0.00030221 -1.0377 -0.00045166 435.24719942863095 100.1 0.46985 103.55 103.11 103.58 3.4483 0.072475 -5.6078E-05 NaN 2.8892 74 60 2 NaN NaN NaN NaN 0 NaN NaN 0 304310 + 55239 28123 34649 34667 0.04118721076940801 YAHICLLR 8 Unmodified _YAHICLLR_ 0 0 0 L1PA3_dup1882|chr3:87880957-87882865:+|1.7293562227778696|0.0147011994544636|6.88|139.0|53|3|sense L1PA3_dup1882|chr3:87880957-87882865:+|1.7293562227778696|0.0147011994544636|6.88|139.0|53|3|sense L1PA3_dup1882|chr3:87880957-87882865:+|1.7293562227778696|0.0147011994544636|6.88|139.0|53|3|sense MSMS UPN48_class_I_Rep_2 6 494.77520751953125 2 494.77348 987.532406 NaN NaN NaN NaN NaN NaN NaN 24.125 1 27.765 27.265 28.265 3.6397 0 0 0 0.40604 1 2751 2751 2.5775 0 1 55240 14237 34650 34668 63495 63495 0.0381414149920829 YAHLKIEP 8 Unmodified _YAHLKIEP_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense MSMS UPN46_class_I_Rep_3 1 485.7528076171875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 113.36 1 113.36 112.86 113.86 0 0 0 0 0.40738 1 28000 28000 0.79363 0 1 + 55241 29233 34651 34669 63496 63496 0.0423837527713431 YAHLKIEP 8 Unmodified _YAHLKIEP_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense MSMS UPN48_class_I_Rep_2 6 485.7719421386719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 111.33 1 115 114.5 115.5 3.6666 0 0 0 0.40738 1 26481 26481 0.79363 0 1 + 55242 29233 34651 34669 63497 63497 0.0423837527713431 YAHLKIEP 8 Unmodified _YAHLKIEP_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense MSMS UPN48_class_I_Rep_3 7 485.7715148925781 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 23.149 1 26.899 26.399 27.399 3.7507 0 0 0 0.40738 1 2484 2484 0.79363 0 1 + 55243 29233 34651 34669 63498 63498 0.0423837527713431 YAHLKIEP 8 Unmodified _YAHLKIEP_ 0 0 0 REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense REV__L1PA15_dup2806|chr5:145604089-145610412:-|3.095116162166008|0.0722506892893113|5.42|151.0|59|1|sense MSMS UPN48_class_I_Rep_3 7 485.2865905761719 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 33.472 1 37.152 36.652 37.652 3.6797 0 0 0 0.40738 1 5208 5208 0.79363 0 1 + 55244 29233 34651 34669 63499 63499 0.0423837527713431 YAHTHVHV 8 Unmodified _YAHTHVHV_ 0 0 0 L1MD2_dup8088|chr12:120836597-120837038:+|1.179077119307604|0.0053814027794972|7.78|151.0|24|3|anti-sense L1MD2_dup8088|chr12:120836597-120837038:+|1.179077119307604|0.0053814027794972|7.78|151.0|24|3|anti-sense L1MD2_dup8088|chr12:120836597-120837038:+|1.179077119307604|0.0053814027794972|7.78|151.0|24|3|anti-sense MSMS UPN48_class_I_Rep_1 5 482.2439880371094 2 482.243401 962.472249 NaN NaN NaN NaN NaN NaN NaN 117.83 1 121.45 120.95 121.95 3.6215 0 0 0 0.40738 1 28721 28721 0.79363 0 1 55245 12038 34652 34670 63500 63500 -0.010488328396718316 YAHVPYNL 8 Unmodified _YAHVPYNL_ 0 0 0 L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|30|3|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|30|3|sense L1PA6_dup4849|chr13:49151576-49152502:-|1.5910565974324509|0.0628143682217642|4.66|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 488.7475891113281 2 488.747985 975.481417 0.23186 0.00011332 -0.64332 -0.00031442 -0.41146 -0.0002011 488.747707063418 69.79 0.69875 73.066 72.786 73.485 3.2761 84 59 2 0 0 0 0.82752 1 16922 16922 5.2307 0.47466 1 92118 55246 14653 34653 34671 63501 63501 -0.007304842740154527 YAIDNPLHY 9 Unmodified _YAIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN48_class_I_Rep_1 5 553.2695922851562 2 553.269281 1104.52401 0.55384 0.00030642 0.24007 0.00013282 0.79391 0.00043925 553.2693431163686 55.063 0.62506 58.571 58.31 58.935 3.5082 69 39 2 0 0 0 0.043452 4 11735 11688;11735;11778;11797 51.63 18.844 1 186070 55247 2493 34654 34672 63502;63503;63504;63505 63503 -0.02407133936435457 YAIDNPLHY 9 Unmodified _YAIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN48_class_I_Rep_2 6 553.2696533203125 2 553.269281 1104.52401 0.61348 0.00033942 0.25336 0.00014018 0.86684 0.0004796 553.2693379461393 54.982 0.67087 58.538 58.297 58.968 3.5559 82 38 3 0 0 0 0.033731 4 11699 11656;11699;11743;11758 55.503 22.717 1 199650 55248 2493 34654 34672 63506;63507;63508;63509 63507 -0.02407133936435457 YAIDNPLHY 9 Unmodified _YAIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MULTI-MSMS UPN48_class_I_Rep_3 7 553.27001953125 2 553.269281 1104.52401 0.25655 0.00014194 0.8441 0.00046701 1.1006 0.00060896 553.2695977995122 55.027 0.65023 58.597 58.277 58.927 3.5694 71 35 3 0 0 0 0.052902 3 11633 11596;11633;11681 47.749 18.667 1 241560 55249 2493 34654 34672 63510;63511;63512 63511 -0.02407133936435457 YAIFTRFRY 9 Unmodified _YAIFTRFRY_ 0 0 0 L1MC4_dup3117|chr2:135155613-135156965:+|1.887644394402892|0.3174073737032789|2.57|151.0|63|1|anti-sense L1MC4_dup3117|chr2:135155613-135156965:+|1.887644394402892|0.3174073737032789|2.57|151.0|63|1|anti-sense L1MC4_dup3117|chr2:135155613-135156965:+|1.887644394402892|0.3174073737032789|2.57|151.0|63|1|anti-sense MSMS UPN48_class_I_Rep_2 6 618.8325805664062 2 618.82984 1235.64513 NaN NaN NaN NaN NaN NaN NaN 46.566 1 50.316 49.816 50.816 3.7494 0 0 0 0.39428 1 9114 9114 2.0598 0.40713 1 55250 11488 34655 34673 63513 63513 0.036731134968931656 YAIITLLKDQ 10 Unmodified _YAIITLLKDQ_ 0 0 0 REV__L1M2_dup4582|chr8:89746065-89748267:+|1.131320366539487|0.0834881039340287|3.76|151.0|52|3|sense REV__L1M2_dup4582|chr8:89746065-89748267:+|1.131320366539487|0.0834881039340287|3.76|151.0|52|3|sense MSMS UPN47_class_I_Rep_1 2 589.3419799804688 2 589.344989 1176.67542 NaN NaN NaN NaN NaN NaN NaN 82.818 1 86.357 85.857 86.857 3.5386 0 0 0 0.53105 1 20699 20699 1.3295 0 1 + 55251 24210 34656 34674 63514 63514 0.09415427371436635 YAINIQLK 8 Unmodified _YAINIQLK_ 0 0 0 REV__L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|8|1|sense REV__L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 481.7392578125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 29.282 1 32.605 32.105 33.105 3.3235 0 0 0 0.40738 1 4711 4711 0.79363 0 1 + 55252 24419 34657 34675 63515 63515 0.07734948311235712 YAINIQLK 8 Unmodified _YAINIQLK_ 0 0 0 REV__L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|8|1|sense REV__L1M4_dup20492|chr22:20096803-20097846:-|1.0972888747319658|0.1344706706397423|3.03|151.0|8|1|sense MSMS UPN48_class_I_Rep_3 7 481.7874755859375 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 39.472 1 43.127 42.627 43.627 3.6557 0 0 0 0.40738 1 6909 6909 0.79363 0 1 + 55253 24419 34657 34675 63516 63516 0.07734948311235712 YAIVQHSTF 9 Unmodified _YAIVQHSTF_ 0 0 0 REV__ENSG00000162882.15,HAAO,chr2,-,I6.1,42767929,42769710|33|6.8|2|intron REV__ENSG00000162882.15,HAAO,chr2,-,I6.1,42767929,42769710|33|6.8|2|intron MULTI-MSMS UPN48_class_I_Rep_2 6 533.2721557617188 2 533.271824 1064.5291 0.36748 0.00019596 0.098842 5.2709E-05 0.46632 0.00024867 533.2716713136642 49.076 0.72892 52.793 52.496 53.225 3.7175 111 47 3 0 0 0 0.28552 1 9959 9959 14.838 0 1 332740 + 55254 19949 34658 34676 63517 63517 -0.0005883007381726202 YAIYHFNV 8 Unmodified _YAIYHFNV_ 0 0 0 HSMAR1_dup641|chr17:16076039-16077107:+|1.5756451908955538|0.1450127860332136|3.44|150.0|24|3|sense HSMAR1_dup641|chr17:16076039-16077107:+|1.5756451908955538|0.1450127860332136|3.44|150.0|24|3|sense HSMAR1_dup641|chr17:16076039-16077107:+|1.5756451908955538|0.1450127860332136|3.44|150.0|24|3|sense MSMS UPN46_class_I_Rep_3 1 513.755615234375 2 513.75581 1025.49707 NaN NaN NaN NaN NaN NaN NaN 13.928 1 13.928 13.428 14.428 0 0 0 0 0.40738 1 505 505 0.79363 0 1 55255 8429 34659 34677 63518 63518 -0.014661977569630835 YAKGFGGQY 9 Unmodified _YAKGFGGQY_ 0 0 0 ENSG00000180353|ENST00000314583|HCLS1 ENSG00000180353|ENST00000314583|HCLS1 ENSG00000180353|ENST00000314583|HCLS1 MSMS UPN46_class_I_Rep_3 1 495.7377624511719 2 495.737617 989.460681 NaN NaN NaN NaN NaN NaN NaN 36.099 1 36.099 35.599 36.599 0 0 0 0 0.19137 1 6652 6652 16.942 2.3606 1 55256 4886 34660 34678 63519 63519 -0.03447074653661275 YAKKLWTA 8 Unmodified _YAKKLWTA_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN46_class_I_Rep_3 1 490.7814025878906 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.16 1 111.16 110.66 111.66 0 0 0 0 0.40746 1 27396 27396 0.69038 0 1 55257 3848;4419 34661 34679 63520 63520 0.058509656567821366 YAKKLWTA 8 Unmodified _YAKKLWTA_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN48_class_I_Rep_2 6 490.7815246582031 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.21 1 114.87 114.37 115.37 3.6666 0 0 0 0.40746 1 26453 26453 0.69038 0 1 55258 3848;4419 34661 34679 63521 63521 0.058509656567821366 YAKKLWTA 8 Unmodified _YAKKLWTA_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN48_class_I_Rep_2 6 490.78265380859375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.55 1 116.21 115.71 116.71 3.6648 0 0 0 0.40625 1 26821 26821 2.3027 0 1 55259 3848;4419 34661 34679 63522 63522 0.058509656567821366 YAKKLWTA 8 Unmodified _YAKKLWTA_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN48_class_I_Rep_2 6 490.7947998046875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.63 1 117.29 116.79 117.79 3.663 0 0 0 0.40604 1 27125 27125 2.5775 0 1 55260 3848;4419 34661 34679 63523 63523 0.058509656567821366 YAKKLWTA 8 Unmodified _YAKKLWTA_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN48_class_I_Rep_3 7 490.78173828125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 26.344 1 30.11 29.61 30.61 3.7663 0 0 0 0.40746 1 3322 3322 0.69038 0 1 55261 3848;4419 34661 34679 63524 63524 0.058509656567821366 YAKKLWTA 8 Unmodified _YAKKLWTA_ 0 0 0 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1 nc|ENSG00000159899|P20594-2|NPR2;ENSG00000169418|ENST00000368680|NPR1 ENSG00000169418|ENST00000368680|NPR1 MSMS UPN48_class_I_Rep_3 7 490.78179931640625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.7 1 116.36 115.86 116.86 3.6568 0 0 0 0.40746 1 26783 26783 0.69038 0 1 55262 3848;4419 34661 34679 63525 63525 0.058509656567821366 YAKMVQVL 8 Unmodified _YAKMVQVL_ 0 0 0 nc|ENSG00000122512|P54278-2|PMS2;nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2 nc|ENSG00000122512|P54278-2|PMS2 nc|ENSG00000122512|P54278-2|PMS2 MULTI-SECPEP UPN48_class_I_Rep_1 5 475.76824951171875 2 476.270238 950.525924 0.19032 9.0645E-05 -0.3833 -0.00018255 -0.19297 -9.1907E-05 476.27000226618355 66.029 0.80865 69.481 69.176 69.984 3.4516 81 53 2 0 0 0 0.72333 1 15207 15207 2.3027 0 1 246120 55263 2390 34662 34680 63526 63526 0.048682035478236685 YAKNVKEF 8 Unmodified _YAKNVKEF_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS UPN48_class_I_Rep_1 5 500.27093505859375 2 499.768917 997.523281 0.348 0.00017392 -0.060053 -3.0013E-05 0.28795 0.00014391 499.76887385585945 61.621 0.40866 65.089 64.879 65.287 3.4678 57 38 2 0 0 0 0.82752 1 13713 13713 12.532 0 1 128210 + 55264 19268 34663 34681 63527 63527 0.024420714145207967 YAKNVKEF 8 Unmodified _YAKNVKEF_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MSMS UPN48_class_I_Rep_3 7 499.7691650390625 2 499.768917 997.523281 NaN NaN NaN NaN NaN NaN NaN 61.341 1 64.854 64.354 65.354 3.5128 0 0 0 0.388 1 13548 13548 12.532 0 1 + 55265 19268 34663 34681 63528 63528 0.024420714145207967 YAKNVKEF 8 Unmodified _YAKNVKEF_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MSMS UPN48_class_I_Rep_3 7 499.7692565917969 2 499.768917 997.523281 NaN NaN NaN NaN NaN NaN NaN 61.471 1 64.984 64.484 65.484 3.5128 0 0 0 0.39996 1 13588 13588 7.9102 0 1 + 55266 19268 34663 34681 63529 63529 0.024420714145207967 YAKYWIYV 8 Unmodified _YAKYWIYV_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN47_class_I_Rep_1 2 553.2884521484375 2 553.289485 1104.56442 -0.013486 -7.4617E-06 -0.95725 -0.00052964 -0.97074 -0.0005371 553.2890217986828 36.493 0.83889 40.162 39.714 40.553 3.6692 101 66 2 0 0 0 0.82752 1 6848 6848 5.7604 0.028577 1 115670 55267 1655 34664 34682 63530 63530 0.0163183245399523 YAKYWIYV 8 Unmodified _YAKYWIYV_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN47_class_I_Rep_2 3 553.2894287109375 2 553.289485 1104.56442 0.040123 2.22E-05 -0.70611 -0.00039068 -0.66598 -0.00036848 553.2890355488558 36.718 1.0074 40.117 39.771 40.778 3.3988 102 74 2 0 0 0 0.82752 1 6917 6917 5.7604 0.028577 1 96914 55268 1655 34664 34682 63531 63531 0.0163183245399523 YAKYWIYV 8 Unmodified _YAKYWIYV_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN47_class_I_Rep_3 4 553.2891845703125 2 553.289485 1104.56442 -0.083117 -4.5988E-05 -0.88359 -0.00048888 -0.9667 -0.00053487 553.2889894787614 37.02 1.1083 40.267 39.778 40.886 3.247 131 79 2 0 0 0 0.82752 1 6986 6986 5.7604 0.028577 1 103110 55269 1655 34664 34682 63532 63532 0.0163183245399523 YALFCRRP 8 Unmodified _YALFCRRP_ 0 0 0 REV__nc|ENSG00000106018|P41587-2|VIPR2 REV__nc|ENSG00000106018|P41587-2|VIPR2 MULTI-MSMS UPN46_class_I_Rep_3 1 513.2703247070312 2 513.271104 1024.52766 0.29803 0.00015297 -1.6107 -0.00082673 -1.3127 -0.00067376 513.2702125388079 77.943 0.26831 77.943 77.797 78.065 0 35 28 2 0 0 0 0.82752 1 18248 18248 0.79363 0 1 63907 + 55270 18315 34665 34683 63533 63533 0.016372573564240156 YALKFRGK 8 Unmodified _YALKFRGK_ 0 0 0 L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 491.7957458496094 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.155 1 63.629 63.129 64.129 3.4737 0 0 0 0.40581 1 13281 13281 2.8892 0 1 55271 11400 34666 34684 63534 63534 0.08446074267999393 YALKFRGK 8 Unmodified _YALKFRGK_ 0 0 0 L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense MSMS UPN48_class_I_Rep_1 5 491.79534912109375 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.311 1 63.784 63.284 64.284 3.4737 0 0 0 0.40581 1 13329 13329 2.8892 0 1 55272 11400 34666 34684 63535 63535 0.08446074267999393 YALKFRGK 8 Unmodified _YALKFRGK_ 0 0 0 L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense L1MC4_dup13231|chr9:100206380-100207255:-|1.1972746731027966|0.0280161175271825|5.42|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 491.7960510253906 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 60.306 1 63.784 63.284 64.284 3.4785 0 0 0 0.40581 1 13306 13306 2.8892 0 1 55273 11400 34666 34684 63536 63536 0.08446074267999393 YALLCDLAIP 10 Unmodified _YALLCDLAIP_ 0 0 0 L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|18|3|sense L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|18|3|sense L1ME1_dup14269|chr7:139061604-139062215:+|2.8223681709122945|0.3326205978953566|3.08|151.0|18|3|sense MSMS UPN48_class_I_Rep_1 5 546.2742919921875 2 546.293911 1090.57327 NaN NaN NaN NaN NaN NaN NaN 50.372 1 53.897 53.397 54.397 3.5246 0 0 0 0.53105 1 10280 10280 7.2892 2.0586 1 55274 12220 34667 34685 63537 63537 0.031604380281578415 YALPHAVLHL 10 Unmodified _YALPHAVLHL_ 0 0 0 ENST00000450451.1_1_1:238090483-238090852:+|nuORF ENST00000450451.1_1_1:238090483-238090852:+|nuORF ENST00000450451.1_1_1:238090483-238090852:+|nuORF MSMS UPN48_class_I_Rep_1 5 567.3270263671875 2 567.326934 1132.63931 NaN NaN NaN NaN NaN NaN NaN 53.536 1 57.055 56.555 57.555 3.5192 0 0 0 0.53105 1 11246 11246 24.674 7.7316 1 55275 6809 34668 34686 63538 63538 0.07830014985211164 YALPHAVLHL 10 Unmodified _YALPHAVLHL_ 0 0 0 ENST00000450451.1_1_1:238090483-238090852:+|nuORF ENST00000450451.1_1_1:238090483-238090852:+|nuORF ENST00000450451.1_1_1:238090483-238090852:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 567.3267822265625 2 567.326934 1132.63931 0.55452 0.0003146 -0.092586 -5.2527E-05 0.46194 0.00026207 567.3268371747022 53.47 0.44698 57.08 56.728 57.175 3.6098 42 29 2 0 0 0 0.34369 1 11183 11183 24.674 10.768 1 126920 55276 6809 34668 34686 63539 63539 0.07830014985211164 YALPHAVLHL 10 Unmodified _YALPHAVLHL_ 0 0 0 ENST00000450451.1_1_1:238090483-238090852:+|nuORF ENST00000450451.1_1_1:238090483-238090852:+|nuORF ENST00000450451.1_1_1:238090483-238090852:+|nuORF MSMS UPN48_class_I_Rep_3 7 567.3279418945312 2 567.326934 1132.63931 NaN NaN NaN NaN NaN NaN NaN 53.585 1 57.169 56.669 57.669 3.5836 0 0 0 0.53105 1 11184 11184 24.674 14.6 1 55277 6809 34668 34686 63540 63540 0.07830014985211164 YALPTLKKPH 10 Unmodified _YALPTLKKPH_ 0 0 0 REV__ENSG00000164690|ENST00000297261|SHH REV__ENSG00000164690|ENST00000297261|SHH MSMS UPN46_class_I_Rep_3 1 584.3463134765625 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 106.02 1 106.02 105.52 106.52 0 0 0 0 0.53105 1 25855 25855 1.3295 0.63916 1 + 55278 20076 34669 34687 63541 63541 0.10450570673765469 YALRFTKK 8 Unmodified _YALRFTKK_ 0 0 0 REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|26|2|sense REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 513.8074340820312 2 513.808377 1025.6022 0.26612 0.00013673 -1.5776 -0.00081059 -1.3115 -0.00067386 513.8067410818514 62.035 0.55691 65.403 65.126 65.683 3.3681 75 41 3 0 0 0 0.82752 1 14601 14601 5.2307 0 1 138930 + 55279 26939 34670 34688 63542 63542 0.09042343439477918 YALRFTKK 8 Unmodified _YALRFTKK_ 0 0 0 REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|26|2|sense REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|26|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 513.8074340820312 2 513.808377 1025.6022 0.26612 0.00013673 -1.5776 -0.00081059 -1.3115 -0.00067386 513.8067410818514 62.035 0.55691 65.403 65.126 65.683 3.3681 75 41 3 0 0 0 0.72333 1 14601 14601 5.2307 0 1 138930 + 55280 26939 34670 34688 63543 63543 0.09042343439477918 YALRFTKK 8 Unmodified _YALRFTKK_ 0 0 0 REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|26|2|sense REV__L1MC4_dup715|chr1:84539772-84540766:-|2.8582234168231686|0.0728512221531376|5.29|151.0|26|2|sense MSMS UPN47_class_I_Rep_3 4 513.8072509765625 2 513.808377 1025.6022 NaN NaN NaN NaN NaN NaN NaN 87.757 1 91.145 90.645 91.645 3.3873 0 0 0 0.40643 1 22000 22000 2.0598 0.21551 1 + 55281 26939 34670 34688 63544 63544 0.09042343439477918 YALRIRAQ 8 Unmodified _YALRIRAQ_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MSMS UPN47_class_I_Rep_3 4 495.7966003417969 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 63.032 1 66.201 65.701 66.701 3.1698 0 0 0 0.40738 1 14985 14985 0.79363 0 1 55282 740 34671 34689 63545 63545 0.08184288636891779 YALRLQWYS 9 Unmodified _YALRLQWYS_ 0 0 0 L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|23|2|sense L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|23|2|sense L1MC_dup5385|chr10:101545779-101547078:+|1.1506252078970547|0.0898819852598176|3.68|151.0|23|2|sense MSMS UPN48_class_I_Rep_2 6 600.3181762695312 2 600.314023 1198.61349 NaN NaN NaN NaN NaN NaN NaN 36.386 1 40.074 39.574 40.574 3.6877 0 0 0 0.39428 1 6109 6109 2.0598 0.21551 1 55283 11064 34672 34690 63546 63546 0.022131207429538335 YALTITREL 9 Unmodified _YALTITREL_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MULTI-SECPEP UPN48_class_I_Rep_3 7 539.8178100585938 2 540.308406 1078.60226 0.42986 0.00023226 -0.071342 -3.8547E-05 0.35852 0.00019371 540.3082714636072 55.648 0.39591 59.203 58.931 59.327 3.5554 38 24 2 0 0 0 0.11959 1 11784 11784 7.9102 0 1 102030 + 55284 19323 34673 34691 63547 63547 0.0661029864882039 YALVSNLSPY 10 Unmodified _YALVSNLSPY_ 0 0 0 nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 MSMS UPN47_class_I_Rep_2 3 563.776611328125 2 563.792589 1125.57063 NaN NaN NaN NaN NaN NaN NaN 74.869 1 78.182 77.682 78.682 3.3127 0 0 0 0.53105 1 18461 18461 8.1555 2.4237 1 55285 1947 34674 34692 63548 63548 0.012863058948596517 YAMIQARLQ 9 Unmodified _YAMIQARLQ_ 0 0 0 REV__nc|ENSG00000127616|P51532-5|SMARCA4 REV__nc|ENSG00000127616|P51532-5|SMARCA4 MSMS UPN47_class_I_Rep_1 2 547.292236328125 2 547.294776 1092.575 NaN NaN NaN NaN NaN NaN NaN 55.748 1 59.226 58.726 59.726 3.4785 0 0 0 0.36505 1 12678 12678 7.2892 0.56607 1 + 55286 18882 34675 34693 63549 63549 0.032414918367749124 YAMIQARLQ 9 Unmodified _YAMIQARLQ_ 0 0 0 REV__nc|ENSG00000127616|P51532-5|SMARCA4 REV__nc|ENSG00000127616|P51532-5|SMARCA4 MSMS UPN48_class_I_Rep_1 5 547.29296875 2 547.294776 1092.575 NaN NaN NaN NaN NaN NaN NaN 55.892 1 59.394 58.894 59.894 3.5014 0 0 0 0.28335 1 11974 11974 11.64 0 1 + 55287 18882 34675 34693 63550 63550 0.032414918367749124 YANSKAVTL 9 Unmodified _YANSKAVTL_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MULTI-MSMS UPN46_class_I_Rep_3 1 483.7662353515625 2 483.766374 965.518196 0.13735 6.6446E-05 0.12383 5.9905E-05 0.26118 0.00012635 483.7663072999085 35.404 0.92422 35.404 35.121 36.045 0 155 65 4 0 0 0 0.0060665 3 6456 6417;6456;6501 90.135 28.784 1 495370 55288 4079 34676 34694 63551;63552;63553 63552 0.03405767551907957 YANYKSYD 8 Unmodified _YANYKSYD_ 0 0 0 REV__nc|ENSG00000164744|Q8TAQ9-3|SUN3 REV__nc|ENSG00000164744|Q8TAQ9-3|SUN3 MSMS UPN46_class_I_Rep_3 1 512.240478515625 2 512.224539 1022.43453 NaN NaN NaN NaN NaN NaN NaN 119.62 1 119.62 119.12 120.12 0 0 0 0 0.40746 1 29737 29737 0.69038 0 1 + 55289 32041 34677 34695 63554 63554 -0.07579388615806693 YAPFVHFL 8 Unmodified _YAPFVHFL_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MSMS UPN47_class_I_Rep_2 3 497.2631530761719 2 497.263271 992.511988 NaN NaN NaN NaN NaN NaN NaN 44.288 1 47.644 47.144 48.144 3.3556 0 0 0 0.40581 1 9221 9221 2.8892 0 1 55290 4349 34678 34696 63555 63555 0.015432941110361753 YAPITDREPNH 11 Unmodified _YAPITDREPNH_ 0 0 0 L1PA4_dup10247|chr14:32131585-32133928:-|1.0544384681215269|0.0743807264033704|3.83|148.0|6|1|sense L1PA4_dup10247|chr14:32131585-32133928:-|1.0544384681215269|0.0743807264033704|3.83|148.0|6|1|sense L1PA4_dup10247|chr14:32131585-32133928:-|1.0544384681215269|0.0743807264033704|3.83|148.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 438.215087890625 3 438.214198 1311.62076 NaN NaN NaN NaN NaN NaN NaN 40.283 1 43.788 43.288 44.288 3.5048 0 0 0 0.38417 1 7213 7213 4.4062 0.81909 1 55291 14298 34679 34697 63556 63556 -0.022581914472766584 YAPPFQNR 8 Unmodified _YAPPFQNR_ 0 0 0 REV__ENSG00000101310|ENST00000650089|SEC23B REV__ENSG00000101310|ENST00000650089|SEC23B MSMS UPN48_class_I_Rep_2 6 496.7524719238281 2 496.751059 991.487565 NaN NaN NaN NaN NaN NaN NaN 24.812 1 28.448 27.948 28.948 3.6363 0 0 0 0.4044 1 2932 2932 4.756 1.8668 1 + 55292 18155 34680 34698 63557 63557 -0.00851966042478125 YARGHYTI 8 Unmodified _YARGHYTI_ 0 0 0 ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D ENSG00000123416|ENST00000336023|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000167552|Q71U36-2|TUBA1A ENSG00000123416|ENST00000336023|TUBA1B MULTI-MSMS UPN47_class_I_Rep_2 3 490.7509765625 2 490.751059 979.487565 -0.10458 -5.1324E-05 -0.38808 -0.00019045 -0.49266 -0.00024177 490.7508619381771 24.943 0.80376 28.426 28.119 28.922 3.483 90 70 2 0 0 0 0.82752 4 3407 3327;3334;3360;3407 7.9102 0.62092 1 66676 55293 2425;4314;7292 34681 34699 63558;63559;63560;63561 63561 -0.0029996604248481162 YARKQKWI 8 Unmodified _YARKQKWI_ 0 0 0 REV__L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|6|1|sense REV__L1PA7_dup5335|chr6:85582431-85585394:+|2.0920458325400992|0.1431109146866209|3.87|150.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 546.8296508789062 2 546.819276 1091.624 NaN NaN NaN NaN NaN NaN NaN 45.874 1 49.39 48.89 49.89 3.5162 0 0 0 0.40625 1 8894 8894 2.3027 0.24298 1 + 55294 30123 34682 34700 63562 63562 0.0818514818802214 YARLVNEL 8 Unmodified _YARLVNEL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-MSMS UPN47_class_I_Rep_1 2 489.2744140625 2 489.274367 976.53418 -0.13763 -6.7341E-05 0.095834 4.6889E-05 -0.0418 -2.0452E-05 489.2744009202105 45.053 0.54605 48.753 48.504 49.05 3.6999 53 32 2 0 0 0 0.82752 1 9459 9459 9.3831 1.2276 1 73579 55295 2552 34683 34701 63563 63563 0.04497473788796924 YARPLLTPAPL 11 Unmodified _YARPLLTPAPL_ 0 0 0 ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron;ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|4|intron;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron ENSG00000055609.19,KMT2C,chr7,-,I18.1,152224617,152229922|27|9.77|1|intron MULTI-MSMS UPN48_class_I_Rep_1 5 606.8638916015625 2 606.360973 1210.70739 0.41771 0.00025328 0.24462 0.00014833 0.66233 0.00040161 606.360929065973 108.65 0.63891 112.28 112.17 112.81 3.6321 144 75 2 0 0 0 0.65559 1 26276 26276 2.7352 0 1 25210000 55296 942 34684 34702 63564 63564 0.11046839845243994 YARTTLFL 8 Unmodified _YARTTLFL_ 0 0 0 L1MB8_dup16343|chr22:42942236-42943618:-|2.8696596623222|0.0974384773616|4.88|151.0|71|2|anti-sense;L1MB2_dup810|chr2:63463507-63465065:+|1.0199881587220836|0.0372102439315823|4.78|150.0|71|1|anti-sense L1MB8_dup16343|chr22:42942236-42943618:-|2.8696596623222|0.0974384773616|4.88|151.0|71|2|anti-sense L1MB8_dup16343|chr22:42942236-42943618:-|2.8696596623222|0.0974384773616|4.88|151.0|71|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.7794494628906 2 492.779285 983.544017 0.11433 5.634E-05 0.17291 8.5206E-05 0.28724 0.00014155 492.77926097050357 59.146 0.79495 62.311 61.969 62.764 3.1658 74 50 3 0 0 0 0.82752 1 13829 13829 4.756 0 1 117210 55297 10297 34685 34703 63565 63565 0.051586617941893564 YASPITAVSR 10 Unmodified _YASPITAVSR_ 0 0 0 nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF;ENSG00000135362|ENST00000530639|PRR5L nc|ENSG00000135362|Q6MZQ0-2|PRR5L nc|ENSG00000135362|Q6MZQ0-2|PRR5L MULTI-MSMS UPN48_class_I_Rep_2 6 532.7904052734375 2 532.790381 1063.56621 0.33417 0.00017804 -0.07234 -3.8542E-05 0.26183 0.0001395 532.79032235432 47.674 1.08 51.41 51.127 52.207 3.7361 115 78 2 0 0 0 0.54822 1 9573 9573 5.7319 1.4026 1 165110 55298 2903 34686 34704 63566 63566 0.036968414719467546 YATHRRQEQER 11 Unmodified _YATHRRQEQER_ 0 0 0 REV__nc|ENSG00000152969|Q96N16-3|JAKMIP1 REV__nc|ENSG00000152969|Q96N16-3|JAKMIP1 MSMS UPN46_class_I_Rep_3 1 491.8946838378906 3 491.915034 1472.72327 NaN NaN NaN NaN NaN NaN NaN 66.472 1 66.472 65.972 66.972 0 0 0 0 0.38417 1 15083 15083 0.45452 0 1 + 55299 19697 34687 34705 63567 63567 0.005818943441909141 YATRDLELY 9 Unmodified _YATRDLELY_ 0 0 0 MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|4|2|sense MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|4|2|sense MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 572.2876586914062 2 572.287671 1142.56079 0.26486 0.00015158 -0.38987 -0.00022312 -0.12501 -7.1541E-05 572.2873375252627 46.246 0.53967 49.598 49.359 49.898 3.3515 61 35 2 0 0 0 0.37599 2 9807 9807;9845 9.3831 0 1 103820 55300 16491 34688 34706 63568;63569 63568 -0.004788821105421448 YATRDLELY 9 Unmodified _YATRDLELY_ 0 0 0 MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|4|2|sense MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|4|2|sense MLT1N2_dup4604|chr15:64536322-64536503:+|1.4098154484443917|0.0060250352337177|7.87|151.0|4|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.287353515625 2 572.287671 1142.56079 0.29273 0.00016752 -0.62012 -0.00035489 -0.3274 -0.00018737 572.2872394880035 46.326 0.4174 49.57 49.38 49.798 3.2439 44 27 2 0 0 0 0.37599 1 9948 9948 9.3831 0 1 86296 55301 16491 34688 34706 63570 63570 -0.004788821105421448 YATREGDY 8 Unmodified _YATREGDY_ 0 0 0 ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-2|ACLY ENSG00000131473|ENST00000352035|ACLY ENSG00000131473|ENST00000352035|ACLY MULTI-MSMS UPN46_class_I_Rep_3 1 487.71466064453125 2 487.714339 973.414125 0.19686 9.601E-05 0.10861 5.2971E-05 0.30547 0.00014898 487.7143940615424 37.658 0.58169 37.658 37.462 38.044 0 84 57 2 0 0 0 0.82752 2 7057 7057;7146 4.3292 0 1 202320 55302 2713 34689 34707 63571;63572 63571 -0.07364559275617921 YATTLLLI 8 Unmodified _YATTLLLI_ 0 0 0 REV__L1MD2_dup10233|chr20:8175320-8176828:+|3.781101245737821|0.0298131744455964|6.99|151.0|59|3|sense REV__L1MD2_dup10233|chr20:8175320-8176828:+|3.781101245737821|0.0298131744455964|6.99|151.0|59|3|sense MSMS UPN48_class_I_Rep_1 5 454.2796325683594 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 41.291 1 44.797 44.297 45.297 3.506 0 0 0 0.40581 1 7509 7509 2.8892 0 1 + 55303 27384 34690 34708 63573 63573 0.08561027705434299 YATTLLLI 8 Unmodified _YATTLLLI_ 0 0 0 REV__L1MD2_dup10233|chr20:8175320-8176828:+|3.781101245737821|0.0298131744455964|6.99|151.0|59|3|sense REV__L1MD2_dup10233|chr20:8175320-8176828:+|3.781101245737821|0.0298131744455964|6.99|151.0|59|3|sense MSMS UPN48_class_I_Rep_3 7 454.2794494628906 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 40.867 1 44.518 44.018 45.018 3.6509 0 0 0 0.40581 1 7320 7320 2.8892 0 1 + 55304 27384 34690 34708 63574 63574 0.08561027705434299 YATTLLLI 8 Unmodified _YATTLLLI_ 0 0 0 REV__L1MD2_dup10233|chr20:8175320-8176828:+|3.781101245737821|0.0298131744455964|6.99|151.0|59|3|sense REV__L1MD2_dup10233|chr20:8175320-8176828:+|3.781101245737821|0.0298131744455964|6.99|151.0|59|3|sense MSMS UPN48_class_I_Rep_3 7 454.2799377441406 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 41.181 1 44.827 44.327 45.327 3.6458 0 0 0 0.40581 1 7410 7410 2.8892 0 1 + 55305 27384 34690 34708 63575 63575 0.08561027705434299 YAVELINYD 9 Unmodified _YAVELINYD_ 0 0 0 REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|287|3|anti-sense REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|287|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 550.217529296875 2 550.268947 1098.52334 0.42394 0.00023328 -0.26246 -0.00014442 0.16149 8.8862E-05 550.2688365449934 73.306 0.2491 76.603 76.494 76.743 3.2971 26 19 2 0 0 0 0.12354 1 17998 17998 3.5965 0 1 65592 + 55306 23531 34691 34709 63576 63576 -0.0219797337615546 YAVELINYD 9 Unmodified _YAVELINYD_ 0 0 0 REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|287|3|anti-sense REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|287|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.2686767578125 2 550.268947 1098.52334 0.44672 0.00024582 -0.24285 -0.00013363 0.20387 0.00011218 550.2687705301618 73.391 0.39387 76.628 76.402 76.796 3.2363 45 32 2 0 0 0 0.43982 1 18125 18125 5.7319 0 1 108940 + 55307 23531 34691 34709 63577 63577 -0.0219797337615546 YAVELINYD 9 Unmodified _YAVELINYD_ 0 0 0 REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|287|3|anti-sense REV__HERV1_I-int_dup13|chr8:38082342-38087554:-|3.4525887704809186|0.2583248382008731|3.74|151.0|287|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 550.268947 1098.52334 0.40973 0.00022546 0.047785 2.6295E-05 0.45752 0.00025176 550.2690024165383 73.16 0.32443 76.546 76.362 76.686 3.3861 -0.046299 0.00021912 NaN 3.5965 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 46240 + 55308 23531 34691 34709 -0.0219797337615546 YAVIALKK 8 Unmodified _YAVIALKK_ 0 0 0 ENST00000552741.5_1_12:82868290-82872800:+|nuORF;ENST00000551645.1_1_12:82870329-82872800:+|nuORF;ENST00000548432.5_1_12:82832322-82872800:+|nuORF;ENSG00000127720|ENST00000248306|METTL25 ENST00000552741.5_1_12:82868290-82872800:+|nuORF ENST00000552741.5_1_12:82868290-82872800:+|nuORF MSMS UPN46_class_I_Rep_3 1 453.4334716796875 2 453.294571 904.574589 NaN NaN NaN NaN NaN NaN NaN 35.124 1 35.124 34.624 35.624 0 0 0 0 0.40738 1 6357 6357 0.79363 0 1 55309 2572 34692 34710 63578 63578 0.11848440179221598 YAVIQASLF 9 Unmodified _YAVIQASLF_ 0 0 0 Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|79|3|anti-sense Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|79|3|anti-sense Tigger1_dup5976|chr7:140903226-140904340:+|2.7317106326889187|0.0287521824721775|6.57|151.0|79|3|anti-sense MSMS UPN47_class_I_Rep_1 2 506.2805480957031 2 506.279118 1010.54368 NaN NaN NaN NaN NaN NaN NaN 54.644 1 58.145 57.645 58.645 3.5014 0 0 0 0.28335 1 12342 12342 11.64 0.52583 1 55310 33140 34693 34711 63579 63579 0.03883242074323334 YAVPSGRPVD 10 Unmodified _YAVPSGRPVD_ 0 0 0 L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|16|1|sense L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|16|1|sense L1M4c_dup345|chr2:108869098-108870609:+|1.334666848704757|0.1117301806194578|3.58|151.0|16|1|sense MSMS UPN47_class_I_Rep_1 2 530.7735595703125 2 530.774731 1059.53491 NaN NaN NaN NaN NaN NaN NaN 47.513 1 51.208 50.708 51.708 3.6951 0 0 0 0.53105 1 10170 10170 6.7232 0 1 55311 9062 34694 34712 63580 63580 0.0075226843787277176 YAVRSCLSV 9 Unmodified _YAVRSCLSV_ 0 0 0 REV__ENST00000216416.8_1_14:54897113-54898903:-|nuORF REV__ENST00000216416.8_1_14:54897113-54898903:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 499.25872802734375 2 499.260402 996.506251 -0.16977 -8.4762E-05 0.07318 3.6536E-05 -0.096594 -4.8226E-05 499.2604691379319 28.115 0.79572 31.614 31.038 31.834 3.4986 97 64 2 0 0 0 0.46434 1 4231 4231 4.3292 0 1 68159 + 55312 21475 34695 34713 63581 63581 0.007858275370722367 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_1 5 487.24957275390625 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.798 1 60.3 59.8 60.8 3.5014 0 0 0 0.4032 1 12252 12252 6.3541 0 1 55313 8889 34696 34714 63582 63582 -0.0022213777180013494 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_1 5 487.2497253417969 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.953 1 60.447 59.947 60.947 3.4942 0 0 0 0.4032 1 12299 12299 6.3541 0 1 55314 8889 34696 34714 63583 63583 -0.0022213777180013494 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_2 6 487.2498474121094 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.761 1 60.294 59.794 60.794 3.5333 0 0 0 0.4032 1 12216 12216 6.3541 0 1 55315 8889 34696 34714 63584 63584 -0.0022213777180013494 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_2 6 487.2498474121094 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.882 1 60.415 59.915 60.915 3.5333 0 0 0 0.4032 1 12254 12254 6.3541 0 1 55316 8889 34696 34714 63585 63585 -0.0022213777180013494 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 487.2498779296875 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.391 1 59.934 59.434 60.434 3.5427 0 0 0 0.4032 1 12040 12040 6.3541 0 1 55317 8889 34696 34714 63586 63586 -0.0022213777180013494 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 487.25 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.536 1 60.079 59.579 60.579 3.5427 0 0 0 0.4032 1 12085 12085 6.3541 0 1 55318 8889 34696 34714 63587 63587 -0.0022213777180013494 YAVYKRCA 8 Unmodified _YAVYKRCA_ 0 0 0 L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|35|2|sense MSMS UPN48_class_I_Rep_3 7 487.2499694824219 2 487.249837 972.485122 NaN NaN NaN NaN NaN NaN NaN 56.661 1 60.204 59.704 60.704 3.5427 0 0 0 0.4032 1 12123 12123 6.3541 0 1 55319 8889 34696 34714 63588 63588 -0.0022213777180013494 YAYLFLHA 8 Unmodified _YAYLFLHA_ 0 0 0 HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|36|1|sense HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|36|1|sense HERV9NC-int_dup35|chr2:97821647-97827149:+|2.478970986971637|0.0653025194355725|5.25|151.0|36|1|sense MSMS UPN47_class_I_Rep_1 2 499.2607421875 2 499.260728 996.506903 NaN NaN NaN NaN NaN NaN NaN 27.601 1 31.368 30.868 31.868 3.7662 0 0 0 0.40581 1 4131 4131 2.8892 0 1 55320 8104 34697 34715 63589 63589 0.00850990248409289 YAYTGRLEL 9 Unmodified _YAYTGRLEL_ 0 0 0 ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5 ENSG00000109790|ENST00000504108|KLHL5 ENSG00000109790|ENST00000504108|KLHL5 MULTI-MSMS UPN48_class_I_Rep_2 6 543.2855834960938 2 543.284931 1084.55531 0.52097 0.00028303 0.2516 0.00013669 0.77256 0.00041972 543.2851548337644 52.466 0.12605 56.105 56.067 56.193 3.639 11 8 2 0 0 0 0.43982 1 10901 10901 5.7319 0 1 91901 55321 1911 34698 34716 63590 63590 0.016414390976706272 YAYYPGDKII 10 Unmodified _YAYYPGDKII_ 0 0 0 L1PA15_dup34|chr1:39341918-39342492:-|1.2203900739573337|0.0179135435338821|6.09|151.0|11|2|sense L1PA15_dup34|chr1:39341918-39342492:-|1.2203900739573337|0.0179135435338821|6.09|151.0|11|2|sense L1PA15_dup34|chr1:39341918-39342492:-|1.2203900739573337|0.0179135435338821|6.09|151.0|11|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.8082885742188 2 601.808239 1201.60193 0.58658 0.00035301 0.1992 0.00011988 0.78578 0.00047289 601.8082117857371 75.564 0.47418 79.129 78.919 79.393 3.5658 98 50 3 0 0 0 0.56118 1 17820 17820 2.9952 0.26005 1 344350 55322 13923 34699 34717 63591 63591 0.009188789289510169 YCAFYLAH 8 Unmodified _YCAFYLAH_ 0 0 0 REV__ENST00000479722.1_1_10:101373360-101379897:-|nuORF REV__ENST00000479722.1_1_10:101373360-101379897:-|nuORF MSMS UPN48_class_I_Rep_2 6 494.22406005859375 2 494.223288 986.432024 NaN NaN NaN NaN NaN NaN NaN 21.811 1 25.457 24.957 25.957 3.6459 0 0 0 0.40738 1 2123 2123 0.79363 0.10326 1 + 55323 19764 34700 34718 63592 63592 -0.06173515554473852 YCALLYCP 8 Unmodified _YCALLYCP_ 0 0 0 Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 473.21392822265625 2 473.214075 944.413596 -0.23882 -0.00011301 0.35446 0.00016774 0.11565 5.4726E-05 473.21422222547426 42.693 0.87279 46.38 46.023 46.895 3.6875 91 62 2 0 0 0 0.82752 2 8656 8656;8698 24.21 0 1 103100 55324 33029 34701 34719 63593;63594 63593 -0.06083393520680147 YCALLYCP 8 Unmodified _YCALLYCP_ 0 0 0 Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 473.2138366699219 2 473.214075 944.413596 -0.22961 -0.00010866 0.48411 0.00022909 0.2545 0.00012043 473.21429868756854 43.021 0.84123 46.379 46.077 46.918 3.358 80 57 2 0 0 0 0.82752 2 8805 8805;8844 24.21 0 1 87994 55325 33029 34701 34719 63595;63596 63595 -0.06083393520680147 YCALLYCP 8 Unmodified _YCALLYCP_ 0 0 0 Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense Tigger1_dup12030|chr22:38376344-38376875:-|1.2733417137739431|0.1002815661526305|3.67|150.0|8|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 473.214075 944.413596 -0.23882 -0.00011301 0.35446 0.00016774 0.11565 5.4726E-05 473.21422222547426 42.693 0.87279 46.38 46.023 46.895 3.6875 -0.023676 -9.6804E-05 NaN 24.21 91 62 2 NaN NaN NaN NaN 0 NaN NaN 0 103100 55326 33029 34701 34719 -0.06083393520680147 YCAYKLKK 8 Unmodified _YCAYKLKK_ 0 0 0 L1ME3G_dup4790|chr5:50422868-50423326:+|3.4753817132252904|0.0207729594163599|7.39|151.0|8|2|sense L1ME3G_dup4790|chr5:50422868-50423326:+|3.4753817132252904|0.0207729594163599|7.39|151.0|8|2|sense L1ME3G_dup4790|chr5:50422868-50423326:+|3.4753817132252904|0.0207729594163599|7.39|151.0|8|2|sense MSMS UPN46_class_I_Rep_3 1 508.7957763671875 2 508.783513 1015.55247 NaN NaN NaN NaN NaN NaN NaN 82.665 1 82.665 82.165 83.165 0 0 0 0 0.40738 1 19594 19594 0.79363 0 1 55327 12839 34702 34720 63597 63597 0.045318924391494875 YCCCCCCVR 9 Unmodified _YCCCCCCVR_ 0 0 0 REV__L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|101|1|anti-sense REV__L1M4c_dup470|chr2:210112765-210115354:+|1.1962798806040904|0.1080935129915434|3.47|150.0|101|1|anti-sense MSMS UPN48_class_I_Rep_1 5 527.9913330078125 2 528.156539 1054.29853 NaN NaN NaN NaN NaN NaN NaN 107.64 1 111.27 110.77 111.77 3.6313 0 0 0 0.4029 1 25954 25954 0 0 1 + 55328 24600 34703 34721 63598 63598 -0.2264522858165492 YCCCFVYEE 9 Unmodified _YCCCFVYEE_ 0 0 0 REV__L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|41|1|anti-sense REV__L1MC1_dup8383|chr10:850172-851180:+|1.2038867112044556|0.0151120640266964|6.32|151.0|41|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 579.2717895507812 2 579.700671 1157.38679 0.49072 0.00028447 0.47174 0.00027347 0.96246 0.00055794 580.2028396135603 79.631 0.090965 79.631 79.586 79.677 0 9 7 2 0 0 0 0.12532 1 18717 18717 0.52476 0 1 128710 + 55329 26601 34704 34722 63599 63599 -0.18560870194164636 YCCCPPPC 8 Unmodified _YCCCPPPC_ 0 0 0 ENST00000529601.5_1_11:64879440-64881038:+|nuORF ENST00000529601.5_1_11:64879440-64881038:+|nuORF ENST00000529601.5_1_11:64879440-64881038:+|nuORF MSMS UPN48_class_I_Rep_2 6 442.85931396484375 2 443.141738 884.268923 NaN NaN NaN NaN NaN NaN NaN 74.756 1 78.346 77.846 78.846 3.59 0 0 0 0.40798 1 17603 17603 0 0 1 55330 7285 34705 34723 63600 63600 -0.17784101263828234 YCCEEGLFMC 10 Unmodified _YCCEEGLFMC_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MSMS UPN48_class_I_Rep_2 6 599.2078247070312 2 599.207806 1196.40106 NaN NaN NaN NaN NaN NaN NaN 20.891 1 24.539 24.039 25.039 3.648 0 0 0 0.53105 1 1878 1878 0 0 1 + 55331 32140 34706 34724 63601 63601 -0.18928541037507784 YCCHLFLTY 9 Unmodified _YCCHLFLTY_ 0 0 0 REV__L1MEd_dup14015|chr10:21964510-21965267:-|1.7346058268759308|0.0178584813821347|6.6|151.0|58|3|anti-sense REV__L1MEd_dup14015|chr10:21964510-21965267:-|1.7346058268759308|0.0178584813821347|6.6|151.0|58|3|anti-sense MSMS UPN47_class_I_Rep_2 3 581.3295288085938 2 581.756638 1161.49872 NaN NaN NaN NaN NaN NaN NaN 65.614 1 68.87 68.37 69.37 3.2556 0 0 0 0.39518 1 15711 15711 1.8442 0.19162 1 + 55332 28524 34707 34725 63602 63602 -0.07556648054878679 YCCYECYS 8 Unmodified _YCCYECYS_ 0 0 0 REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense MSMS UPN47_class_I_Rep_1 2 516.7972412109375 2 517.158639 1032.30273 NaN NaN NaN NaN NaN NaN NaN 38.519 1 42.184 41.684 42.684 3.6652 0 0 0 0.40604 1 7432 7432 2.5775 0 1 + 55333 25790 34708 34726 63603 63603 -0.21213401291083755 YCCYECYS 8 Unmodified _YCCYECYS_ 0 0 0 REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.8058471679688 2 517.158639 1032.30273 NaN NaN NaN NaN NaN NaN NaN 102.9 1 106.41 105.91 106.91 3.5057 0 0 0 0.40746 1 25273 25273 0.69038 0 1 + 55334 25790 34708 34726 63604 63604 -0.21213401291083755 YCCYECYS 8 Unmodified _YCCYECYS_ 0 0 0 REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.79736328125 2 517.158639 1032.30273 NaN NaN NaN NaN NaN NaN NaN 115.93 1 119.56 119.06 120.06 3.6282 0 0 0 0.40746 1 28217 28217 0.69038 0 1 + 55335 25790 34708 34726 63605 63605 -0.21213401291083755 YCCYECYS 8 Unmodified _YCCYECYS_ 0 0 0 REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense MSMS UPN48_class_I_Rep_2 6 516.7978515625 2 517.158639 1032.30273 NaN NaN NaN NaN NaN NaN NaN 20.863 1 24.511 24.011 25.011 3.648 0 0 0 0.40746 1 1870 1870 0.69038 0 1 + 55336 25790 34708 34726 63606 63606 -0.21213401291083755 YCCYECYS 8 Unmodified _YCCYECYS_ 0 0 0 REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense MSMS UPN48_class_I_Rep_2 6 516.7823486328125 2 517.158639 1032.30273 NaN NaN NaN NaN NaN NaN NaN 24.26 1 27.9 27.4 28.4 3.6397 0 0 0 0.40746 1 2788 2788 0.69038 0 1 + 55337 25790 34708 34726 63607 63607 -0.21213401291083755 YCCYECYS 8 Unmodified _YCCYECYS_ 0 0 0 REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense REV__L1MB3_dup10311|chr10:68022548-68023726:+|2.6325989374917005|0.1583621976697302|4.06|151.0|72|3|anti-sense MSMS UPN48_class_I_Rep_2 6 516.797607421875 2 517.158639 1032.30273 NaN NaN NaN NaN NaN NaN NaN 36.041 1 39.729 39.229 40.229 3.6877 0 0 0 0.40746 1 6017 6017 0.69038 0 1 + 55338 25790 34708 34726 63608 63608 -0.21213401291083755 YCDDHNLL 8 Unmodified _YCDDHNLL_ 0 0 0 REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF MSMS UPN47_class_I_Rep_2 3 496.7118225097656 2 496.710742 991.406931 NaN NaN NaN NaN NaN NaN NaN 37.548 1 40.947 40.447 41.447 3.3988 0 0 0 0.40604 1 7172 7172 2.5775 0.27475 1 + 55339 19135 34709 34727 63609 63609 -0.089116151476901 YCDDHNLL 8 Unmodified _YCDDHNLL_ 0 0 0 REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF MSMS UPN47_class_I_Rep_3 4 496.7118225097656 2 496.710742 991.406931 NaN NaN NaN NaN NaN NaN NaN 61.09 1 64.255 63.755 64.755 3.1651 0 0 0 0.40746 1 14387 14387 0.69038 0.088878 1 + 55340 19135 34709 34727 63610 63610 -0.089116151476901 YCEECFYF 8 Unmodified _YCEECFYF_ 0 0 0 REV__L1MA2_dup3058|chr7:129301119-129303004:-|1.0646415424322255|0.0201965535301212|5.72|149.0|116|3|anti-sense REV__L1MA2_dup3058|chr7:129301119-129303004:-|1.0646415424322255|0.0201965535301212|5.72|149.0|116|3|anti-sense MSMS UPN48_class_I_Rep_3 7 552.2129516601562 2 552.196079 1102.3776 NaN NaN NaN NaN NaN NaN NaN 118.85 1 122.44 121.94 122.94 3.5847 0 0 0 0.40738 1 28258 28258 0.79363 0 1 + 55341 24850 34710 34728 63611 63611 -0.1694889548818992 YCEVFKCP 8 Unmodified _YCEVFKCP_ 0 0 0 REV__L1MD1_dup6618|chr22:20563052-20563741:+|1.037216718827143|0.0467159355605116|4.47|150.0|17|2|sense REV__L1MD1_dup6618|chr22:20563052-20563741:+|1.037216718827143|0.0467159355605116|4.47|150.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 494.7184753417969 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 37.668 1 41.056 40.556 41.556 3.3879 0 0 0 0.40643 1 7209 7209 2.0598 0.73022 1 + 55342 27380 34711 34729 63612 63612 -0.07480295009008842 YCFKYYFS 8 Unmodified _YCFKYYFS_ 0 0 0 L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|59|3|anti-sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|59|3|anti-sense L1MCa_dup4354|chrX:73961137-73962021:-|2.4482793506325304|0.1458771249779131|4.07|151.0|59|3|anti-sense MSMS UPN47_class_I_Rep_3 4 560.7462158203125 2 560.744053 1119.47355 NaN NaN NaN NaN NaN NaN NaN 111.15 1 114.68 114.18 115.18 3.529 0 0 0 0.40604 1 27274 27274 2.5775 0.27475 1 55343 11809 34712 34730 63613 63613 -0.08140379585802293 YCFSFSFHP 9 Unmodified _YCFSFSFHP_ 0 0 0 L1MD3_dup1721|chr6:34906517-34907348:+|1.1154301893878544|0.0362145309387839|4.94|151.0|60|3|anti-sense L1MD3_dup1721|chr6:34906517-34907348:+|1.1154301893878544|0.0362145309387839|4.94|151.0|60|3|anti-sense L1MD3_dup1721|chr6:34906517-34907348:+|1.1154301893878544|0.0362145309387839|4.94|151.0|60|3|anti-sense MSMS UPN47_class_I_Rep_1 2 567.7393798828125 2 567.739302 1133.46405 NaN NaN NaN NaN NaN NaN NaN 31.812 1 35.541 35.041 36.041 3.7293 0 0 0 0.39428 1 5390 5390 2.0598 0 1 55344 12063 34713 34731 63614 63614 -0.09734147871313326 YCGGCFHG 8 Unmodified _YCGGCFHG_ 0 0 0 REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF MSMS UPN47_class_I_Rep_1 2 421.7513732910156 2 422.149266 842.283979 NaN NaN NaN NaN NaN NaN NaN 66.956 1 70.317 69.817 70.817 3.3611 0 0 0 0.40738 1 16072 16072 0.79363 0 1 + 55345 22782 34714 34732 63615 63615 -0.14347150079959192 YCGGCFHG 8 Unmodified _YCGGCFHG_ 0 0 0 REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF MSMS UPN47_class_I_Rep_2 3 421.7955627441406 2 422.149266 842.283979 NaN NaN NaN NaN NaN NaN NaN 85.458 1 88.89 88.39 89.39 3.4329 0 0 0 0.40738 1 21260 21260 0.79363 0 1 + 55346 22782 34714 34732 63616 63616 -0.14347150079959192 YCGGCFHG 8 Unmodified _YCGGCFHG_ 0 0 0 REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF MSMS UPN48_class_I_Rep_3 7 421.7554931640625 2 422.149266 842.283979 NaN NaN NaN NaN NaN NaN NaN 76.215 1 79.798 79.298 80.298 3.5831 0 0 0 0.40738 1 17946 17946 0.79363 0 1 + 55347 22782 34714 34732 63617 63617 -0.14347150079959192 YCHCCCQCPHG 11 Unmodified _YCHCCCQCPHG_ 0 0 0 L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|7|1|sense L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|7|1|sense L1PA13_dup8141|chr17:31129729-31131601:-|1.0109480294203084|0.0255708042387631|5.31|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 627.1923828125 2 627.192499 1252.37044 NaN NaN NaN NaN NaN NaN NaN 25.439 1 29.006 28.506 29.506 3.5667 0 0 0 0.38417 1 2965 2965 0 0 1 55348 13800 34715 34733 63618 63618 -0.24564597903577123 YCHFSQNW 8 Unmodified _YCHFSQNW_ 0 0 0 L1PA16_dup12857|chr18:2735080-2737393:+|3.367683331606745|0.2593542722056718|3.7|151.0|36|2|sense L1PA16_dup12857|chr18:2735080-2737393:+|3.367683331606745|0.2593542722056718|3.7|151.0|36|2|sense L1PA16_dup12857|chr18:2735080-2737393:+|3.367683331606745|0.2593542722056718|3.7|151.0|36|2|sense MSMS UPN47_class_I_Rep_1 2 542.2416381835938 2 542.718901 1083.42325 NaN NaN NaN NaN NaN NaN NaN 119.13 1 122.73 122.23 123.23 3.6036 0 0 0 0.40738 1 29589 29589 0.79363 0 1 55349 14047 34716 34734 63619 63619 -0.11512489190931774 YCHFWQPR 8 Unmodified _YCHFWQPR_ 0 0 0 REV__L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|34|2|sense REV__L1M2_dup1009|chr2:135303129-135304932:-|1.277349527243114|0.2619620209679789|2.29|151.0|34|2|sense MSMS UPN48_class_I_Rep_1 5 568.7584228515625 2 568.758361 1135.50217 NaN NaN NaN NaN NaN NaN NaN 117.66 1 121.28 120.78 121.78 3.6215 0 0 0 0.40738 1 28677 28677 0.79363 0 1 + 55350 24176 34717 34735 63620 63620 -0.06016217166006754 YCHSFLCKAW 10 Unmodified _YCHSFLCKAW_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C MSMS UPN48_class_I_Rep_1 5 629.2805786132812 2 629.280812 1256.54707 NaN NaN NaN NaN NaN NaN NaN 27.403 1 30.966 30.466 31.466 3.5629 0 0 0 0.53105 1 3523 3523 1.6526 0 1 + 55351 31991 34718 34736 63621 63621 -0.07094154414949116 YCILEVLVLC 10 Unmodified _YCILEVLVLC_ 0 0 0 L1MB3_dup2398|chr2:161187456-161188748:+|3.711677656924776|0.1201259642982483|4.95|151.0|86|3|anti-sense L1MB3_dup2398|chr2:161187456-161188748:+|3.711677656924776|0.1201259642982483|4.95|151.0|86|3|anti-sense L1MB3_dup2398|chr2:161187456-161188748:+|3.711677656924776|0.1201259642982483|4.95|151.0|86|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3114624023438 2 584.311246 1166.60794 NaN NaN NaN NaN NaN NaN NaN 58.984 1 58.984 58.484 59.484 0 0 0 0 0.53105 1 13013 13013 1.6526 0 1 55352 10404 34719 34737 63622 63622 0.03129937844619235 YCINALQY 8 Unmodified _YCINALQY_ 0 0 0 REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B MSMS UPN48_class_I_Rep_2 6 494.2795715332031 2 494.233853 986.453153 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.97 114.47 115.47 3.6666 0 0 0 0.40746 1 26474 26474 0.69038 0 1 + 55353 32045 34720 34738 63623 63623 -0.04061550245614853 YCIVCIYHI 9 Unmodified _YCIVCIYHI_ 0 0 0 L1MB3_dup3718|chr3:183750259-183751391:-|1.1062031701259936|0.0340232349945332|5.02|151.0|50|2|anti-sense L1MB3_dup3718|chr3:183750259-183751391:-|1.1062031701259936|0.0340232349945332|5.02|151.0|50|2|anti-sense L1MB3_dup3718|chr3:183750259-183751391:-|1.1062031701259936|0.0340232349945332|5.02|151.0|50|2|anti-sense MSMS UPN48_class_I_Rep_1 5 563.7772216796875 2 563.774831 1125.53511 NaN NaN NaN NaN NaN NaN NaN 33.725 1 37.245 36.745 37.745 3.5201 0 0 0 0.39326 1 5300 5300 2.3027 0.4585 1 55354 10422 34721 34739 63624 63624 -0.022637711581637632 YCIYWLVY 8 Unmodified _YCIYWLVY_ 0 0 0 L1PB1_dup3694|chr4:168971584-168973362:-|1.3910243128067736|0.0453454919149995|4.94|151.0|122|3|anti-sense L1PB1_dup3694|chr4:168971584-168973362:-|1.3910243128067736|0.0453454919149995|4.94|151.0|122|3|anti-sense L1PB1_dup3694|chr4:168971584-168973362:-|1.3910243128067736|0.0453454919149995|4.94|151.0|122|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 561.76953125 2 561.770071 1121.52559 -0.16278 -9.1443E-05 -1.0142 -0.00056977 -1.177 -0.00066122 561.7695163268336 13.269 0.27083 13.269 13.156 13.427 0 48 30 2 0 0 0 0.82752 1 338 338 0.79363 0.10326 1 39818 55355 15095 34722 34740 63625 63625 -0.030312161720303266 YCIYWLVY 8 Unmodified _YCIYWLVY_ 0 0 0 L1PB1_dup3694|chr4:168971584-168973362:-|1.3910243128067736|0.0453454919149995|4.94|151.0|122|3|anti-sense L1PB1_dup3694|chr4:168971584-168973362:-|1.3910243128067736|0.0453454919149995|4.94|151.0|122|3|anti-sense L1PB1_dup3694|chr4:168971584-168973362:-|1.3910243128067736|0.0453454919149995|4.94|151.0|122|3|anti-sense MSMS UPN46_class_I_Rep_3 1 561.7700805664062 2 561.770071 1121.52559 NaN NaN NaN NaN NaN NaN NaN 13.642 1 13.642 13.142 14.142 0 0 0 0 0.40738 1 434 434 0.79363 0 1 55356 15095 34722 34740 63626 63626 -0.030312161720303266 YCKKMKII 8 Unmodified _YCKKMKII_ 0 0 0 REV__ENSG00000146070|ENST00000274793|PLA2G7 REV__ENSG00000146070|ENST00000274793|PLA2G7 MSMS UPN47_class_I_Rep_1 2 513.7977905273438 2 513.795566 1025.57658 NaN NaN NaN NaN NaN NaN NaN 98.082 1 101.87 101.37 102.37 3.7861 0 0 0 0.40625 1 24286 24286 2.3027 0 1 + 55357 19529 34723 34741 63627 63627 0.06481409601178711 YCKYDYFI 8 Unmodified _YCKYDYFI_ 0 0 0 REV__HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|65|3|anti-sense REV__HAL1_dup4910|chr3:121684153-121685254:+|2.001999473140472|0.3457374417360274|2.53|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_2 3 557.7470092773438 2 557.749336 1113.48412 NaN NaN NaN NaN NaN NaN NaN 23.134 1 26.579 26.079 27.079 3.4447 0 0 0 0.40604 1 2864 2864 2.5775 0 1 + 55358 23428 34724 34742 63628 63628 -0.06808396931387506 YCKYFYFV 8 Unmodified _YCKYFYFV_ 0 0 0 REV__L1MEc_dup8513|chr7:123735328-123736523:+|1.2749851984026044|0.0351257038247736|5.18|151.0|63|3|anti-sense REV__L1MEc_dup8513|chr7:123735328-123736523:+|1.2749851984026044|0.0351257038247736|5.18|151.0|63|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.7182006835938 2 566.762246 1131.50994 NaN NaN NaN NaN NaN NaN NaN 52.95 1 56.145 55.645 56.645 3.1948 0 0 0 0.40625 1 11904 11904 2.3027 0.4585 1 + 55359 28488 34725 34743 63629 63629 -0.05055502689106106 YCLAGVVSF 9 Unmodified _YCLAGVVSF_ 0 0 0 REV__SLC7A6|p.Q388Pfs*60|1|0.04|ENSG00000103064|chr16:68296400-68296401|-/T|frameshift_variant REV__SLC7A6|p.Q388Pfs*60|1|0.04|ENSG00000103064|chr16:68296400-68296401|-/T|frameshift_variant MSMS UPN48_class_I_Rep_1 5 479.7370300292969 2 479.738771 957.462989 NaN NaN NaN NaN NaN NaN NaN 59.416 1 62.896 62.396 63.396 3.4801 0 0 0 0.34056 1 13053 13053 8.5933 0.68312 1 + 55360 18213 34726 34744 63630 63630 -0.017443622402083747 YCLDQFTINK 10 Unmodified _YCLDQFTINK_ 0 0 0 REV__MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|30|1|sense REV__MER41-int_dup754|chr7:142705072-142708422:+|9.350723595857623|0.1146060881141948|6.35|150.0|30|1|sense MSMS UPN48_class_I_Rep_1 5 622.773681640625 2 622.802631 1243.59071 NaN NaN NaN NaN NaN NaN NaN 48.122 1 51.644 51.144 52.144 3.5219 0 0 0 0.53105 1 9584 9584 3.5965 0.60125 1 + 55361 31301 34727 34745 63631 63631 -0.021342664368376063 YCLKAFCIVR 10 Unmodified _YCLKAFCIVR_ 0 0 0 L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|315|2|anti-sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|315|2|anti-sense L1MD1_dup1072|chr3:4385185-4390600:-|10.847632858875462|0.0590787913034491|7.52|151.0|315|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 405.8840637207031 3 405.884078 1214.63041 -0.07422 -3.0125E-05 0.53505 0.00021717 0.46083 0.00018704 406.21872775280957 67.335 0.39589 70.787 70.561 70.957 3.4516 43 26 2 0 0 0 0.56444 1 15506 15506 0.69767 0.07084 1 57302 55362 11903 34728 34746 63632 63632 0.03167582032847349 YCLLTLFTY 9 Unmodified _YCLLTLFTY_ 0 0 0 REV__Tigger3b_dup3279|chr8:73958804-73959238:-|1.1053349709872842|0.0951360091524105|3.54|151.0|15|3|sense REV__Tigger3b_dup3279|chr8:73958804-73959238:-|1.1053349709872842|0.0951360091524105|3.54|151.0|15|3|sense MSMS UPN48_class_I_Rep_2 6 568.788818359375 2 568.788461 1135.56237 NaN NaN NaN NaN NaN NaN NaN 54.074 1 57.656 57.156 58.156 3.5817 0 0 0 0.38478 1 11394 11394 4.3292 0 1 + 55363 32742 34729 34747 63633 63633 1.0356538723499398E-05 YCLYKSFY 8 Unmodified _YCLYKSFY_ 0 0 0 REV__L1ME1_dup25145|chr14:89527978-89528376:+|1.000373001823582|0.0160144709323179|5.97|150.0|27|3|anti-sense REV__L1ME1_dup25145|chr14:89527978-89528376:+|1.000373001823582|0.0160144709323179|5.97|150.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 543.753173828125 2 543.751879 1085.4892 NaN NaN NaN NaN NaN NaN NaN 119.3 1 122.92 122.42 123.42 3.6189 0 0 0 0.40738 1 29116 29116 0.79363 0 1 + 55364 27700 34730 34748 63634 63634 -0.05012093068739887 YCMDDCQVYP 10 Unmodified _YCMDDCQVYP_ 0 0 0 REV__HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|195|2|anti-sense REV__HERVL18-int_dup86|chr2:148253986-148259246:-|2.6416807481136786|0.4521129181662472|2.55|151.0|195|2|anti-sense MSMS UPN48_class_I_Rep_2 6 618.7228393554688 2 618.722135 1235.42972 NaN NaN NaN NaN NaN NaN NaN 112.59 1 116.25 115.75 116.75 3.6648 0 0 0 0.53105 1 26832 26832 1.6526 0 1 + 55365 23907 34731 34749 63635 63635 -0.1785810013673199 YCMFVKHL 8 Unmodified _YCMFVKHL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MULTI-SECPEP UPN46_class_I_Rep_3 1 521.3131103515625 2 520.756441 1039.49833 0.32782 0.00017071 0.46202 0.0002406 0.78984 0.00041132 520.7563670785427 91.816 0.26711 91.816 91.611 91.878 0 51 22 3 0 0 0 0.72333 1 22196 22196 0.79363 0 1 434460 55366 3726 34732 34750 63636 63636 -0.019840229840610846 YCMFVKHL 8 Unmodified _YCMFVKHL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MULTI-MATCH UPN47_class_I_Rep_2 3 2 520.756441 1039.49833 0.18265 9.5118E-05 0.28074 0.0001462 0.4634 0.00024132 520.7564009260882 88.343 0.39578 91.79 91.571 91.967 3.4471 0.01832 0.00018793 NaN 0.79363 70 49 2 NaN NaN NaN NaN 0 NaN NaN 0 111160 55367 3726 34732 34750 -0.019840229840610846 YCMFVKHL 8 Unmodified _YCMFVKHL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MULTI-MATCH UPN47_class_I_Rep_3 4 2 520.756441 1039.49833 0.3641 0.00018961 0.039924 2.079E-05 0.40402 0.0002104 520.7563325627374 88.358 0.43225 91.745 91.596 92.029 3.3873 -0.026322 -6.2882E-05 NaN 0.79363 81 51 2 NaN NaN NaN NaN 0 NaN NaN 0 94577 55368 3726 34732 34750 -0.019840229840610846 YCMFVKHL 8 Unmodified _YCMFVKHL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MULTI-MATCH UPN48_class_I_Rep_1 5 2 520.756441 1039.49833 0.28115 0.00014641 0.080787 4.207E-05 0.36193 0.00018848 520.7563693992793 88.097 0.58692 91.716 91.434 92.02 3.6193 -0.055013 -2.0323E-05 NaN 0.79363 110 62 2 NaN NaN NaN NaN 0 NaN NaN 0 238230 55369 3726 34732 34750 -0.019840229840610846 YCMFVKHL 8 Unmodified _YCMFVKHL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MULTI-MATCH UPN48_class_I_Rep_2 6 2 520.756441 1039.49833 0.37095 0.00019318 0.038487 2.0042E-05 0.40944 0.00021322 520.7562779296712 88.029 0.56847 91.757 91.477 92.046 3.7279 -0.013947 -6.4379E-05 NaN 0.79363 150 70 4 NaN NaN NaN NaN 0 NaN NaN 0 317190 55370 3726 34732 34750 -0.019840229840610846 YCMFVKHL 8 Unmodified _YCMFVKHL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MULTI-MATCH UPN48_class_I_Rep_3 7 2 520.756441 1039.49833 0.41158 0.00021434 0.026055 1.3568E-05 0.43764 0.0002279 520.7562228033204 87.994 0.54761 91.804 91.545 92.092 3.8104 0.032621 -7.7327E-05 NaN 0.79363 116 66 2 NaN NaN NaN NaN 0 NaN NaN 0 282580 55371 3726 34732 34750 -0.019840229840610846 YCMYCSATSF 10 Unmodified _YCMYCSATSF_ 0 0 0 L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 588.2155151367188 2 588.213946 1174.41334 NaN NaN NaN NaN NaN NaN NaN 66.902 1 70.353 69.853 70.853 3.4516 0 0 0 0.53105 1 15333 15333 3.5965 0 1 55372 12748 34733 34751 63637 63637 -0.16689181302854195 YCMYCSATSF 10 Unmodified _YCMYCSATSF_ 0 0 0 L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 588.21533203125 2 588.213946 1174.41334 NaN NaN NaN NaN NaN NaN NaN 67.077 1 70.529 70.029 71.029 3.4516 0 0 0 0.53105 1 15387 15387 1.4819 0 1 55373 12748 34733 34751 63638 63638 -0.16689181302854195 YCMYCSATSF 10 Unmodified _YCMYCSATSF_ 0 0 0 L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_2 6 588.2150268554688 2 588.213946 1174.41334 NaN NaN NaN NaN NaN NaN NaN 66.829 1 70.326 69.826 70.826 3.4964 0 0 0 0.53105 1 15298 15298 6.2058 2.6093 1 55374 12748 34733 34751 63639 63639 -0.16689181302854195 YCMYCSATSF 10 Unmodified _YCMYCSATSF_ 0 0 0 L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense L1ME3C_dup2375|chr12:51293650-51294287:+|1.0957995668953675|0.0579937208150565|4.24|151.0|45|3|anti-sense MSMS UPN48_class_I_Rep_2 6 588.216064453125 2 588.213946 1174.41334 NaN NaN NaN NaN NaN NaN NaN 66.995 1 70.491 69.991 70.991 3.4964 0 0 0 0.53105 1 15349 15349 3.5965 0 1 55375 12748 34733 34751 63640 63640 -0.16689181302854195 YCMYVDYF 8 Unmodified _YCMYVDYF_ 0 0 0 REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|313|3|anti-sense REV__L1PA6_dup88|chr1:65462003-65468172:-|1.05412567519553|0.1206317125021597|3.13|151.0|313|3|anti-sense MSMS UPN47_class_I_Rep_2 3 552.215087890625 2 552.214272 1102.41399 NaN NaN NaN NaN NaN NaN NaN 24.376 1 27.841 27.341 28.341 3.4655 0 0 0 0.40746 1 3219 3219 0.69038 0 1 + 55376 29957 34734 34752 63641 63641 -0.1331201859147768 YCNSFYPV 8 Unmodified _YCNSFYPV_ 0 0 0 L1MC1_dup7132|chr8:144750012-144750846:-|3.119680576151452|0.4006023584430365|2.96|151.0|28|3|sense L1MC1_dup7132|chr8:144750012-144750846:-|3.119680576151452|0.4006023584430365|2.96|151.0|28|3|sense L1MC1_dup7132|chr8:144750012-144750846:-|3.119680576151452|0.4006023584430365|2.96|151.0|28|3|sense MSMS UPN46_class_I_Rep_3 1 496.71221923828125 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 69.72 1 69.72 69.22 70.22 0 0 0 0 0.40738 1 15989 15989 0.79363 0 1 55377 11188 34735 34753 63642 63642 -0.08509525653983019 YCPKRKRL 8 Unmodified _YCPKRKRL_ 0 0 0 Tigger1_dup8360|chr10:124771878-124772409:-|1.2747933693222182|0.0481149391638187|4.73|151.0|1|1|sense Tigger1_dup8360|chr10:124771878-124772409:-|1.2747933693222182|0.0481149391638187|4.73|151.0|1|1|sense Tigger1_dup8360|chr10:124771878-124772409:-|1.2747933693222182|0.0481149391638187|4.73|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 532.3112182617188 2 532.313303 1062.61205 NaN NaN NaN NaN NaN NaN NaN 67.814 1 71.266 70.766 71.766 3.4517 0 0 0 0.40604 1 15616 15616 2.5775 0.27475 1 55378 33196 34736 34754 63643 63643 0.08325208173187093 YCPWKICLQQ 10 Unmodified _YCPWKICLQQ_ 0 0 0 MER1B_dup3938|chr12:57392249-57392553:-|1.785450730729674|0.0102180286956796|7.45|151.0|6|2|sense MER1B_dup3938|chr12:57392249-57392553:-|1.785450730729674|0.0102180286956796|7.45|151.0|6|2|sense MER1B_dup3938|chr12:57392249-57392553:-|1.785450730729674|0.0102180286956796|7.45|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 641.34619140625 2 641.309569 1280.60458 NaN NaN NaN NaN NaN NaN NaN 54.278 1 54.278 53.778 54.778 0 0 0 0 0.53105 1 11738 11738 1.4819 0 1 55379 15814 34737 34755 63644 63644 -0.024493122094099817 YCQIFKFC 8 Unmodified _YCQIFKFC_ 0 0 0 L1ME3Cz_dup4510|chr6:42607755-42608335:-|1.1297047495716537|0.0134656727799087|6.39|151.0|38|2|anti-sense L1ME3Cz_dup4510|chr6:42607755-42608335:-|1.1297047495716537|0.0134656727799087|6.39|151.0|38|2|anti-sense L1ME3Cz_dup4510|chr6:42607755-42608335:-|1.1297047495716537|0.0134656727799087|6.39|151.0|38|2|anti-sense MSMS UPN47_class_I_Rep_1 2 526.2415771484375 2 526.240624 1050.46669 NaN NaN NaN NaN NaN NaN NaN 89.598 1 93.272 92.772 93.772 3.6738 0 0 0 0.40604 1 22404 22404 2.5775 0.73324 1 55380 12777 34738 34756 63645 63645 -0.05652015738019145 YCQQLLSI 8 Unmodified _YCQQLLSI_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS UPN47_class_I_Rep_3 4 484.24896240234375 2 484.249503 966.484453 0.13948 6.7545E-05 -0.062216 -3.0128E-05 0.077268 3.7417E-05 484.2492205350847 73.431 0.74496 76.667 76.323 77.068 3.2363 88 66 2 0 0 0 0.82752 1 18165 18165 21.747 0 1 108840 55381 4872 34739 34757 63646 63646 -0.0001297721150876896 YCRFCKYC 8 Unmodified _YCRFCKYC_ 0 0 0 REV__ENST00000264645.11_1_17:38327543-38327843:+|nuORF REV__ENST00000264645.11_1_17:38327543-38327843:+|nuORF MSMS UPN47_class_I_Rep_1 2 543.2219848632812 2 543.221908 1084.42926 NaN NaN NaN NaN NaN NaN NaN 25.974 1 29.736 29.236 30.236 3.7624 0 0 0 0.40738 1 3647 3647 0.79363 0 1 + 55382 21581 34740 34758 63647 63647 -0.10957430275266233 YCSFCCQQY 9 Unmodified _YCSFCCQQY_ 0 0 0 REV__L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|94|3|anti-sense REV__L1MEf_dup11069|chr18:79907908-79909378:-|2.210265250485508|0.337782008012934|2.71|151.0|94|3|anti-sense MSMS UPN47_class_I_Rep_3 4 572.697509765625 2 572.698463 1143.38237 NaN NaN NaN NaN NaN NaN NaN 41.439 1 44.676 44.176 45.176 3.2372 0 0 0 0.39428 1 8405 8405 2.0598 1.2661 1 + 55383 28601 34741 34759 63648 63648 -0.18358334617073524 YCSIFFVFF 9 Unmodified _YCSIFFVFF_ 0 0 0 REV__L1MB7_dup3181|chr2:172578230-172579605:-|1.1854049061382794|0.0273165067487942|5.44|150.0|90|3|anti-sense REV__L1MB7_dup3181|chr2:172578230-172579605:-|1.1854049061382794|0.0273165067487942|5.44|150.0|90|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.7767333984375 2 586.777896 1171.54124 0.50268 0.00029496 -1.0666 -0.00062584 -0.56389 -0.00033088 586.7771729747028 50.273 0.77198 53.499 53.209 53.981 3.2262 92 45 3 0 0 0 0.46434 1 11199 11199 4.3292 0 1 212880 + 55384 26251 34742 34760 63649 63649 -0.03766929654989326 YCSKLVKV 8 Unmodified _YCSKLVKV_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1;MDN1|p.A5053Hfs*69|1|0.04|ENSG00000112159|chr6:89658236-89658236|G/-|frameshift_variant ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS UPN46_class_I_Rep_3 1 470.2723693847656 2 470.270238 938.525924 NaN NaN NaN NaN NaN NaN NaN 83.977 1 83.977 83.477 84.477 0 0 0 0 0.40738 1 19964 19964 0.79363 0 1 55385 2000 34743 34761 63650 63650 0.054202035478283506 YCSLVIKLLR 10 Unmodified _YCSLVIKLLR_ 0 0 0 Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|36|2|sense Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|36|2|sense Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|36|2|sense MSMS UPN48_class_I_Rep_2 6 604.3650512695312 2 604.365201 1206.71585 NaN NaN NaN NaN NaN NaN NaN 102.92 1 106.63 106.13 107.13 3.7108 0 0 0 0.53105 1 24369 24369 0.45834 0 1 55386 33086 34744 34762 63651 63651 0.12076070490161328 YCSSGLPW 8 Unmodified _YCSSGLPW_ 0 0 0 ENST00000567644.5_1_15:74217618-74217795:-|nuORF ENST00000567644.5_1_15:74217618-74217795:-|nuORF ENST00000567644.5_1_15:74217618-74217795:-|nuORF MSMS UPN47_class_I_Rep_2 3 456.71099853515625 2 456.699646 911.384739 NaN NaN NaN NaN NaN NaN NaN 117.65 1 121.14 120.64 121.64 3.4891 0 0 0 0.40738 1 28764 28764 0.79363 0 1 55387 7497 34745 34763 63652 63652 -0.07449794825447498 YCTYNLTKFT 10 Unmodified _YCTYNLTKFT_ 0 0 0 Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|35|2|anti-sense Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|35|2|anti-sense Charlie17_dup238|chr5:87366123-87366726:+|2.0181604165079468|0.1962377367306445|3.36|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_2 3 627.2977294921875 2 627.297181 1252.57981 NaN NaN NaN NaN NaN NaN NaN 68.631 1 71.9 71.4 72.4 3.2696 0 0 0 0.53105 1 16621 16621 1.4819 0.15237 1 55388 452 34746 34764 63653 63653 -0.03637668811143158 YCVIIHPM 8 Unmodified _YCVIIHPM_ 0 0 0 ENSG00000165621|ENST00000541038|OXGR1 ENSG00000165621|ENST00000541038|OXGR1 ENSG00000165621|ENST00000541038|OXGR1 MSMS UPN47_class_I_Rep_3 4 488.2890625 2 488.243166 974.47178 NaN NaN NaN NaN NaN NaN NaN 117.07 1 120.52 120.02 121.02 3.4425 0 0 0 0.40738 1 28827 28827 0.79363 0 1 55389 4189 34747 34765 63654 63654 -0.016477118753982722 YCYYGQVY 8 Unmodified _YCYYGQVY_ 0 0 0 REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|95|1|anti-sense REV__L1PA16_dup2960|chr3:184978698-184981371:-|1.179077119307604|0.0183553545499023|6.01|151.0|95|1|anti-sense MSMS UPN46_class_I_Rep_3 1 529.7183837890625 2 529.718036 1057.42152 NaN NaN NaN NaN NaN NaN NaN 74.983 1 74.983 74.483 75.483 0 0 0 0 0.40738 1 17409 17409 0.79363 0 1 + 55390 29368 34748 34766 63655 63655 -0.1048954299953948 YDAIAVFKE 9 Unmodified _YDAIAVFKE_ 0 0 0 L1MEc_dup14341|chr13:51712452-51713334:+|2.526408677384032|0.0159211577548593|7.31|151.0|1|1|sense L1MEc_dup14341|chr13:51712452-51713334:+|2.526408677384032|0.0159211577548593|7.31|151.0|1|1|sense L1MEc_dup14341|chr13:51712452-51713334:+|2.526408677384032|0.0159211577548593|7.31|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 528.273681640625 2 528.274032 1054.53351 0.29232 0.00015442 0.043167 2.2804E-05 0.33548 0.00017723 528.2741403801376 86.32 0.18025 89.761 89.703 89.883 3.4407 33 24 2 0 0 0 0.21527 1 21485 21485 19.257 0 1 85455 55391 13026 34749 34767 63656 63656 0.008426343491237276 YDAQLRRE 8 Unmodified _YDAQLRRE_ 0 0 0 ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000584052.5_1_18:21033283-21044093:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF ENST00000581302.5_1_18:21033283-21057068:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 525.7700805664062 2 525.76998 1049.52541 -0.31764 -0.00016701 -0.036264 -1.9067E-05 -0.35391 -0.00018607 525.7698310016782 27.348 0.54208 30.69 30.446 30.988 3.3422 84 46 2 0 0 0 0.82752 1 4182 4182 1.8442 0 1 72700 55392 1587 34750 34768 63657 63657 0.0026250015232562873 YDAYPNPFAR 10 Unmodified _YDAYPNPFAR_ 0 0 0 REV__ENSG00000115365|ENST00000450366|LANCL1 REV__ENSG00000115365|ENST00000450366|LANCL1 MSMS UPN48_class_I_Rep_1 5 405.1924743652344 3 405.192734 1212.55637 NaN NaN NaN NaN NaN NaN NaN 50.285 1 53.81 53.31 54.31 3.5246 0 0 0 0.53105 1 10253 10253 3.3196 0 1 + 55393 18559 34751 34769 63658 63658 -0.041403465334497014 YDDDDDFF 8 Unmodified _YDDDDDFF_ 0 0 0 REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense REV__L1MEc_dup6620|chr5:175933351-175934758:+|1.0837211793928323|0.0494236922294861|4.45|150.0|104|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.1787719726562 2 526.179995 1050.34544 NaN NaN NaN NaN NaN NaN NaN 19.132 1 22.712 22.212 23.212 3.5806 0 0 0 0.40604 1 1712 1712 2.5775 1.7838 1 + 55394 28469 34752 34770 63659 63659 -0.17772268366002208 YDDEDEDADE 10 Unmodified _YDDEDEDADE_ 0 0 0 REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF MSMS UPN47_class_I_Rep_1 2 405.79827880859375 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 27.905 1 31.671 31.171 32.171 3.7662 0 0 0 0.53105 1 4223 4223 0 0 1 + 55395 21250 34753 34771 63660 63660 -0.2251103496723772 YDDEDEDADE 10 Unmodified _YDDEDEDADE_ 0 0 0 REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF MSMS UPN47_class_I_Rep_2 3 405.7979431152344 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 21.539 1 24.963 24.463 25.463 3.4241 0 0 0 0.53105 1 2422 2422 0 0 1 + 55396 21250 34753 34771 63661 63661 -0.2251103496723772 YDDEDEDADE 10 Unmodified _YDDEDEDADE_ 0 0 0 REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF MSMS UPN47_class_I_Rep_2 3 405.7978515625 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 26.399 1 29.893 29.393 30.393 3.4945 0 0 0 0.53105 1 3813 3813 0 0 1 + 55397 21250 34753 34771 63662 63662 -0.2251103496723772 YDDEDEDADE 10 Unmodified _YDDEDEDADE_ 0 0 0 REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF REV__ENST00000562701.5_1_16:28997691-29001330:+|nuORF MSMS UPN47_class_I_Rep_2 3 405.7979736328125 3 405.798444 1214.3735 NaN NaN NaN NaN NaN NaN NaN 42.497 1 45.858 45.358 46.358 3.3611 0 0 0 0.53105 1 8672 8672 0 0 1 + 55398 21250 34753 34771 63663 63663 -0.2251103496723772 YDDYEYIPP 9 Unmodified _YDDYEYIPP_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MSMS UPN47_class_I_Rep_2 3 587.7481079101562 2 587.750587 1173.48662 NaN NaN NaN NaN NaN NaN NaN 15.625 1 19.011 18.511 19.511 3.3864 0 0 0 0.40038 1 858 858 0.6015 0.14316 1 55399 2466 34754 34772 63664 63664 -0.09318269992718342 YDEAQKIK 8 Unmodified _YDEAQKIK_ 0 0 0 nc|ENSG00000039600|O94993-2|SOX30;ENSG00000039600|ENST00000265007|SOX30 nc|ENSG00000039600|O94993-2|SOX30 nc|ENSG00000039600|O94993-2|SOX30 MSMS UPN48_class_I_Rep_2 6 497.7652893066406 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 24.12 1 27.76 27.26 28.26 3.6397 0 0 0 0.40625 1 2749 2749 2.3027 0 1 55400 863 34755 34773 63665 63665 0.016094636892944436 YDENYKTQ 8 Unmodified _YDENYKTQ_ 0 0 0 L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|70|2|sense L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|70|2|sense L1PA13_dup6082|chr10:21884870-21888896:+|1.3142155121996075|0.0196886408479791|6.06|151.0|70|2|sense MSMS UPN47_class_I_Rep_3 4 530.7340087890625 2 530.732729 1059.4509 NaN NaN NaN NaN NaN NaN NaN 21.84 1 25.189 24.689 25.689 3.3496 0 0 0 0.40625 1 2512 2512 2.3027 0.4585 1 55401 13775 34756 34774 63666 63666 -0.07644307449709231 YDERRQLRYRR 11 Unmodified _YDERRQLRYRR_ 0 0 0 REV__ENSG00000177971|ENST00000403490|IMP3 REV__ENSG00000177971|ENST00000403490|IMP3 MULTI-SECPEP UPN47_class_I_Rep_2 3 538.303955078125 3 537.625595 1609.85495 -0.0098631 -5.3026E-06 -1.0382 -0.00055819 -1.0481 -0.00056349 537.6251293317181 25.785 0.30206 29.28 29.02 29.322 3.4945 47 30 2 0 0 0 22.551 1 3636 3636 0.08335 0.08335 1 67249 + 55402 20634 34757 34775 63667 63667 0.07442124431918273 YDFECNCHP 9 Unmodified _YDFECNCHP_ 0 0 0 REV__L1MEd_dup10679|chr8:24347578-24348198:-|1.1297398067453797|0.0983811243538726|3.52|151.0|41|3|anti-sense REV__L1MEd_dup10679|chr8:24347578-24348198:-|1.1297398067453797|0.0983811243538726|3.52|151.0|41|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2362060546875 2 564.199684 1126.38482 NaN NaN NaN NaN NaN NaN NaN 114.81 1 118.31 117.81 118.81 3.5039 0 0 0 0.39518 1 27968 27968 1.8442 0.19162 1 + 55403 28504 34758 34776 63668 63668 -0.17332162887760205 YDFLTGDFGL 10 Unmodified _YDFLTGDFGL_ 0 0 0 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 MULTI-MSMS UPN48_class_I_Rep_1 5 574.268798828125 2 574.268947 1146.52334 0.55878 0.00032089 0.97817 0.00056174 1.537 0.00088262 574.2687666224151 61.734 0.9295 65.202 64.864 65.793 3.4678 163 84 3 0 0 0 0.56078 1 13668 13668 3.2813 0 1 448730 + 55404 17833 34759 34777 63669 63669 -0.044059733761287134 YDFYWNLNN 9 Unmodified _YDFYWNLNN_ 0 0 0 REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|91|2|anti-sense REV__L1PB4_dup6615|chr16:47297432-47299206:-|8.111189086272736|0.0467959496749696|7.44|151.0|91|2|anti-sense MSMS UPN48_class_I_Rep_3 7 624.7706909179688 2 624.769645 1247.52474 NaN NaN NaN NaN NaN NaN NaN 96.275 1 100.18 99.683 100.68 3.9084 0 0 0 0.39428 1 22815 22815 2.0598 0.21551 1 + 55405 30618 34760 34778 63670 63670 -0.08912339287348914 YDHLRPSL 8 Unmodified _YDHLRPSL_ 0 0 0 MLT1J_dup898|chr1:184968722-184969215:-|1.0854362849122274|0.0635704248525494|4.09|151.0|7|2|sense MLT1J_dup898|chr1:184968722-184969215:-|1.0854362849122274|0.0635704248525494|4.09|151.0|7|2|sense MLT1J_dup898|chr1:184968722-184969215:-|1.0854362849122274|0.0635704248525494|4.09|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 500.7651672363281 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 74.597 1 74.597 74.097 75.097 0 0 0 0 0.4044 1 17311 17311 4.756 0.81161 1 55406 16464 34761 34779 63671 63671 0.01400303128991709 YDHYRFFQ 8 Unmodified _YDHYRFFQ_ 0 0 0 ENSG00000141579|ENST00000269394|ZNF750 ENSG00000141579|ENST00000269394|ZNF750 ENSG00000141579|ENST00000269394|ZNF750 MSMS UPN48_class_I_Rep_2 6 588.267333984375 2 588.267073 1174.51959 NaN NaN NaN NaN NaN NaN NaN 29.471 1 33.102 32.602 33.602 3.6316 0 0 0 0.40746 1 4191 4191 0.69038 0 1 55407 3227 34762 34780 63672 63672 -0.06068598359343014 YDISQLFDF 9 Unmodified _YDISQLFDF_ 0 0 0 ENST00000523006.1_1_7:139219111-139219246:+|nuORF;ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000523006.1_1_7:139219111-139219246:+|nuORF ENST00000523006.1_1_7:139219111-139219246:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 574.26953125 2 574.268947 1146.52334 0.47687 0.00027385 0.65047 0.00037354 1.1273 0.0006474 574.2687769678308 61.459 0.9514 64.972 64.605 65.557 3.5128 181 80 3 0 0 0 0.47493 1 13717 13717 3.2813 0 1 548760 55408 1525 34763 34781 63673 63673 -0.044059733761287134 YDIVIHLTF 9 Unmodified _YDIVIHLTF_ 0 0 0 L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|184|3|anti-sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|184|3|anti-sense L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|184|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 560.7697143554688 2 560.8055 1119.59645 0.47287 0.00026519 -1.8759 -0.001052 -1.403 -0.00078683 560.8045137222352 73.142 0.072784 76.68 76.625 76.698 3.5373 9 6 2 0 0 0 0.11705 1 17085 17085 10.824 0 1 130200 55409 13240 34764 34782 63674 63674 0.04143200137127678 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN46_class_I_Rep_3 1 627.3674926757812 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 101.63 1 101.63 101.13 102.13 0 0 0 0 0.53105 1 24796 24796 2.9952 0 1 + 55410 19037 34765 34783 63675 63675 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN47_class_I_Rep_1 2 627.367431640625 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 60.466 1 63.847 63.347 64.347 3.3815 0 0 0 0.53105 1 14113 14113 2.9952 0 1 + 55411 19037 34765 34783 63676 63676 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN47_class_I_Rep_3 4 627.3661499023438 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 60.658 1 63.823 63.323 64.323 3.1651 0 0 0 0.53105 1 14258 14258 2.9952 0 1 + 55412 19037 34765 34783 63677 63677 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN47_class_I_Rep_3 4 627.3677978515625 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 60.764 1 63.929 63.429 64.429 3.1651 0 0 0 0.53105 1 14289 14289 2.9952 0 1 + 55413 19037 34765 34783 63678 63678 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN47_class_I_Rep_3 4 627.3673706054688 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 70.987 1 74.199 73.699 74.699 3.2113 0 0 0 0.53105 1 17397 17397 2.9952 0 1 + 55414 19037 34765 34783 63679 63679 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN48_class_I_Rep_1 5 627.367431640625 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 55.828 1 59.329 58.829 59.829 3.5014 0 0 0 0.53105 1 11954 11954 5.7319 0 1 + 55415 19037 34765 34783 63680 63680 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN48_class_I_Rep_1 5 627.3672485351562 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 62.43 1 65.892 65.392 66.392 3.4625 0 0 0 0.53105 1 13971 13971 2.9952 0 1 + 55416 19037 34765 34783 63681 63681 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN48_class_I_Rep_2 6 627.3677368164062 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 55.641 1 59.197 58.697 59.697 3.5559 0 0 0 0.53105 1 11878 11878 2.9952 0 1 + 55417 19037 34765 34783 63682 63682 0.10507749282010082 YDKKKMISKL 10 Unmodified _YDKKKMISKL_ 0 0 0 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 REV__nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS UPN48_class_I_Rep_2 6 627.3549194335938 2 627.367941 1252.72133 NaN NaN NaN NaN NaN NaN NaN 61.974 1 65.448 64.948 65.948 3.4738 0 0 0 0.53105 1 13810 13810 2.9952 0 1 + 55418 19037 34765 34783 63683 63683 0.10507749282010082 YDKKRCYE 8 Unmodified _YDKKRCYE_ 0 0 0 L1ME3B_dup4970|chr10:48360223-48360883:+|1.7470811351685882|0.0369014499051823|5.57|151.0|30|1|anti-sense L1ME3B_dup4970|chr10:48360223-48360883:+|1.7470811351685882|0.0369014499051823|5.57|151.0|30|1|anti-sense L1ME3B_dup4970|chr10:48360223-48360883:+|1.7470811351685882|0.0369014499051823|5.57|151.0|30|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.7583618164062 2 552.760766 1103.50698 NaN NaN NaN NaN NaN NaN NaN 30.02 1 33.502 33.002 34.002 3.4821 0 0 0 0.40625 1 4890 4890 2.3027 0.24298 1 55419 12720 34766 34784 63684 63684 -0.04063377813895386 YDKRIYHL 8 Unmodified _YDKRIYHL_ 0 0 0 REV__ENSG00000140463|ENST00000268057|BBS4 REV__ENSG00000140463|ENST00000268057|BBS4 MSMS UPN46_class_I_Rep_3 1 553.822265625 2 554.300916 1106.58728 NaN NaN NaN NaN NaN NaN NaN 80.354 1 80.354 79.854 80.854 0 0 0 0 0.40738 1 18926 18926 0.79363 0 1 + 55420 19341 34767 34785 63685 63685 0.03824851571448562 YDLAFICRKI 10 Unmodified _YDLAFICRKI_ 0 0 0 L1MA3_dup7703|chr15:44352935-44354077:+|3.2457782486897115|0.082224483993389|5.3|151.0|7|1|sense L1MA3_dup7703|chr15:44352935-44354077:+|3.2457782486897115|0.082224483993389|5.3|151.0|7|1|sense L1MA3_dup7703|chr15:44352935-44354077:+|3.2457782486897115|0.082224483993389|5.3|151.0|7|1|sense MSMS UPN47_class_I_Rep_1 2 621.34228515625 2 621.339184 1240.66381 NaN NaN NaN NaN NaN NaN NaN 22.555 1 26.26 25.76 26.76 3.7042 0 0 0 0.53105 1 2640 2640 1.6526 0.17072 1 55421 9622 34768 34786 63686 63686 0.053109070764321586 YDLKKQIL 8 Unmodified _YDLKKQIL_ 0 0 0 REV__L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|106|3|sense REV__L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|106|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.8082275390625 2 510.808042 1019.60153 0.36612 0.00018702 -0.13696 -6.996E-05 0.22916 0.00011706 510.8078475546205 59.092 0.74391 62.572 62.226 62.97 3.4801 78 46 2 0 0 0 0.82752 1 13001 13001 7.2892 0 1 188990 + 55422 29456 34769 34787 63687 63687 0.09251503999769284 YDLKKQIL 8 Unmodified _YDLKKQIL_ 0 0 0 REV__L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|106|3|sense REV__L1PA17_dup1954|chr7:17915666-17919260:+|1.2043370854752595|0.0466372540061797|4.69|151.0|106|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.8080749511719 2 510.808042 1019.60153 0.24499 0.00012514 -0.069426 -3.5463E-05 0.17556 8.968E-05 510.80786859879163 58.772 0.69455 62.295 62.027 62.722 3.5231 77 45 2 0 0 0 0.82752 1 12820 12820 10.824 0 1 196390 + 55423 29456 34769 34787 63688 63688 0.09251503999769284 YDLVHLDIF 9 Unmodified _YDLVHLDIF_ 0 0 0 REV__L1MA6_dup2864|chr9:40981492-40983651:+|1.287728345406843|0.4884071949421211|1.4|149.0|157|3|anti-sense REV__L1MA6_dup2864|chr9:40981492-40983651:+|1.287728345406843|0.4884071949421211|1.4|149.0|157|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 568.2490234375 2 567.795132 1133.57571 0.45201 0.00025665 -0.36868 -0.00020933 0.083335 4.7317E-05 567.7948813273988 72.558 0.24404 76.031 75.931 76.175 3.4732 21 19 2 0 0 0 0.10341 1 17046 17046 16.942 0 1 72276 + 55424 25451 34770 34788 63689 63689 0.014266097574591186 YDLVIHCH 8 Unmodified _YDLVIHCH_ 0 0 0 MLT1F1_dup582|chr3:49769563-49769932:+|1.2476832223946344|0.0058177104364924|7.74|151.0|24|1|anti-sense MLT1F1_dup582|chr3:49769563-49769932:+|1.2476832223946344|0.0058177104364924|7.74|151.0|24|1|anti-sense MLT1F1_dup582|chr3:49769563-49769932:+|1.2476832223946344|0.0058177104364924|7.74|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_2 3 500.23968505859375 2 500.23947 998.464386 NaN NaN NaN NaN NaN NaN NaN 26.369 1 29.863 29.363 30.363 3.4945 0 0 0 0.40604 1 3804 3804 2.5775 0 1 55425 16390 34771 34789 63690 63690 -0.03490728151473377 YDMCKILC 8 Unmodified _YDMCKILC_ 0 0 0 REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B MSMS UPN46_class_I_Rep_3 1 494.7180480957031 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 81.544 1 81.544 81.044 82.044 0 0 0 0 0.40746 1 19261 19261 0.69038 0 1 + 55426 19366 34772 34790 63691 63691 -0.07143368226638813 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN47_class_I_Rep_3 4 516.7720336914062 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 77.504 1 80.773 80.273 81.273 3.269 0 0 0 0.40798 1 19303 19303 0 0 1 55427 2161 34773 34791 63692 63692 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN48_class_I_Rep_1 5 516.8055419921875 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 94.112 1 97.733 97.233 98.233 3.6208 0 0 0 0.40798 1 22639 22639 0 0 1 55428 2161 34773 34791 63693 63693 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN48_class_I_Rep_2 6 516.7974243164062 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 33.074 1 36.723 36.223 37.223 3.6497 0 0 0 0.40798 1 5183 5183 0 0 1 55429 2161 34773 34791 63694 63694 -0.20963274352425287 YDMDDDEMD 9 Unmodified _YDMDDDEMD_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN48_class_I_Rep_1 5 574.6727905273438 2 574.673362 1147.33217 NaN NaN NaN NaN NaN NaN NaN 96.674 1 100.29 99.786 100.79 3.6124 0 0 0 0.40038 1 23299 23299 0.6015 0 1 55430 2161 34774 34792 63695 63695 -0.23560210531900339 YDMDDDEMDP 10 Unmodified _YDMDDDEMDP_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS UPN46_class_I_Rep_3 1 623.1996459960938 2 623.199744 1244.38493 NaN NaN NaN NaN NaN NaN NaN 111.58 1 111.58 111.08 112.08 0 0 0 0 0.53105 1 27519 27519 0 0 1 55431 2161 34775 34793 63696 63696 -0.22748252469091312 YDNGDVDDSN 10 Unmodified _YDNGDVDDSN_ 0 0 0 REV__nc|ENSG00000147421|Q6NT76-2|HMBOX1 REV__nc|ENSG00000147421|Q6NT76-2|HMBOX1 MSMS UPN48_class_I_Rep_1 5 557.2020874023438 2 557.20199 1112.38943 NaN NaN NaN NaN NaN NaN NaN 118.57 1 122.19 121.69 122.69 3.6189 0 0 0 0.53105 1 28922 28922 0 0 1 + 55432 19567 34776 34794 63697 63697 -0.16227283939633708 YDNIQHVIVM 10 Unmodified _YDNIQHVIVM_ 0 0 0 nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8 nc|ENSG00000102763|A3KMH1-2|VWA8 nc|ENSG00000102763|A3KMH1-2|VWA8 MSMS UPN47_class_I_Rep_1 2 616.3084716796875 2 616.310623 1230.60669 NaN NaN NaN NaN NaN NaN NaN 46.197 1 49.897 49.397 50.397 3.6999 0 0 0 0.53105 1 9776 9776 2.9952 0.69251 1 55433 1623 34777 34795 63698 63698 0.0006143980006072525 YDNIQHVIVM 10 Unmodified _YDNIQHVIVM_ 0 0 0 nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8 nc|ENSG00000102763|A3KMH1-2|VWA8 nc|ENSG00000102763|A3KMH1-2|VWA8 MULTI-MSMS UPN48_class_I_Rep_1 5 616.308349609375 2 616.310623 1230.60669 0.42108 0.00025952 -2.7464 -0.0016926 -2.3253 -0.0014331 616.3090065413365 46.401 0.3178 49.92 49.721 50.039 3.5192 30 19 2 0 0 0 0.56033 1 9015 9015 3.5965 0.60125 1 149900 55434 1623 34777 34795 63699 63699 0.0006143980006072525 YDPFHVHL 8 Unmodified _YDPFHVHL_ 0 0 0 REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|42|1|anti-sense REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|42|1|anti-sense MSMS UPN48_class_I_Rep_1 5 514.2533569335938 2 514.253434 1026.49232 NaN NaN NaN NaN NaN NaN NaN 25.69 1 29.256 28.756 29.756 3.5667 0 0 0 0.40738 1 3033 3033 0.79363 0 1 + 55435 28146 34778 34796 63700 63700 -0.019870818997105744 YDPVLDKY 8 Unmodified _YDPVLDKY_ 0 0 0 REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 507.3268127441406 2 506.752933 1011.49131 0.23215 0.00011764 -0.1826 -9.2534E-05 0.049548 2.5109E-05 506.75283070221053 44.015 0.51264 47.777 47.562 48.074 3.7617 56 38 2 0 0 0 0.72333 1 8344 8344 5.2307 0.47466 1 108420 + 55436 22720 34779 34797 63701 63701 -0.01397341059282553 YDQNGGGRSY 10 Unmodified _YDQNGGGRSY_ 0 0 0 REV__ENST00000468716.2_1_1:171731338-171731551:+|nuORF REV__ENST00000468716.2_1_1:171731338-171731551:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 558.7393188476562 2 558.738877 1115.4632 0.37065 0.0002071 0.012118 6.7706E-06 0.38277 0.00021387 558.7388327544473 60.536 0.071899 63.701 63.652 63.723 3.1651 6 4 2 0 0 0 0.56374 1 14229 14229 1.1933 0.12188 1 123360 + 55437 22490 34780 34798 63702 63702 -0.0899127098664394 YDRDFNWHGKK 11 Unmodified _YDRDFNWHGKK_ 0 0 0 REV__L1M4_dup13998|chr11:72917908-72918644:-|2.350615233679157|0.0147984532878558|7.31|151.0|44|3|anti-sense REV__L1M4_dup13998|chr11:72917908-72918644:-|2.350615233679157|0.0147984532878558|7.31|151.0|44|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 489.571533203125 3 489.237225 1464.68985 0.15614 7.6388E-05 -0.089153 -4.3617E-05 0.066984 3.2771E-05 489.23711230804895 43.679 1.2197 47.318 46.805 48.025 3.6385 125 85 2 0 0 0 0.68478 1 8171 8171 0.094841 0 1 169290 + 55438 24367 34781 34799 63703 63703 -0.02391107427752104 YDSFELNLF 9 Unmodified _YDSFELNLF_ 0 0 0 REV__L1MC4_dup10569|chr7:66124712-66125250:-|1.5005470507883267|0.0344487207608871|5.44|147.0|34|1|anti-sense REV__L1MC4_dup10569|chr7:66124712-66125250:-|1.5005470507883267|0.0344487207608871|5.44|147.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.268798828125 2 574.268947 1146.52334 0.53762 0.00030874 -0.19834 -0.0001139 0.33928 0.00019484 574.2687693629782 61.631 0.99258 65.105 64.698 65.69 3.4738 152 82 2 0 0 0 0.47493 1 13640 13640 3.2813 0 1 518940 + 55439 26798 34782 34800 63704 63704 -0.04405973376151451 YDTIYFEVE 9 Unmodified _YDTIYFEVE_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS UPN48_class_I_Rep_2 6 589.7660522460938 2 589.766237 1177.51792 0.57958 0.00034182 -0.070518 -4.1589E-05 0.50906 0.00030023 589.7661588968714 54.297 0.61927 57.878 57.595 58.214 3.5817 52 37 2 0 0 0 0.48846 1 11391 11391 1.8442 1.8442 1 189980 + 55440 20457 34783 34801 63705 63705 -0.06373696958598885 YDTVIMIVW 9 Unmodified _YDTVIMIVW_ 0 0 0 REV__L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|23|1|sense REV__L1MC4a_dup3528|chr6:20668553-20671348:-|1.1713878424254185|0.0254000137195912|5.53|150.0|23|1|sense MSMS UPN48_class_I_Rep_1 5 570.2958374023438 2 570.293911 1138.57327 NaN NaN NaN NaN NaN NaN NaN 56.91 1 60.404 59.904 60.904 3.4942 0 0 0 0.39326 1 12285 12285 2.3027 0.4585 1 + 55441 26985 34784 34802 63706 63706 0.009524380281391132 YDVALLRL 8 Unmodified _YDVALLRL_ 0 0 0 ENSG00000166682|ENST00000299882|TMPRSS5 ENSG00000166682|ENST00000299882|TMPRSS5 ENSG00000166682|ENST00000299882|TMPRSS5 MSMS UPN47_class_I_Rep_1 2 481.7860107421875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 115.56 1 119.15 118.65 119.65 3.5943 0 0 0 0.40738 1 28595 28595 0.79363 0 1 55442 4256 34785 34803 63707 63707 0.07734948311224343 YDVLKKAK 8 Unmodified _YDVLKKAK_ 0 0 0 L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|12|1|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|12|1|sense L1MC1_dup5615|chr6:143632435-143633860:-|1.0744816958174983|0.0104169927569037|6.69|151.0|12|1|sense MSMS UPN47_class_I_Rep_2 3 482.79559326171875 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 116.43 1 119.93 119.43 120.43 3.4965 0 0 0 0.40604 1 28425 28425 2.5775 0 1 55443 11166 34786 34804 63708 63708 0.09207234828272703 YDVSYGLF 8 Unmodified _YDVSYGLF_ 0 0 0 L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|40|2|anti-sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|40|2|anti-sense L1MB2_dup1353|chr3:33087631-33088368:+|2.257857623361112|0.2513570058703132|3.17|151.0|40|2|anti-sense MSMS UPN48_class_I_Rep_1 5 482.2266845703125 2 482.226551 962.438549 NaN NaN NaN NaN NaN NaN NaN 53.91 1 57.424 56.924 57.924 3.5143 0 0 0 0.40364 1 11362 11362 5.7604 0 1 55444 10209 34787 34805 63709 63709 -0.044172991220762015 YDWHFVLY 8 Unmodified _YDWHFVLY_ 0 0 0 REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|144|2|anti-sense REV__L1ME1_dup20741|chr11:13427221-13429821:+|1.0949937938185086|0.1015853411080239|3.43|151.0|144|2|anti-sense MSMS UPN47_class_I_Rep_3 4 571.7711181640625 2 571.768917 1141.52328 NaN NaN NaN NaN NaN NaN NaN 67.643 1 70.835 70.335 71.335 3.1914 0 0 0 0.40364 1 16390 16390 5.7604 0.52976 1 + 55445 27667 34788 34806 63710 63710 -0.04181928585467176 YDWYKPFS 8 Unmodified _YDWYKPFS_ 0 0 0 REV__AluJr_dup69702|chr16:75007857-75008179:-|1.0163547903811243|0.0087404458491005|6.86|150.0|21|2|anti-sense REV__AluJr_dup69702|chr16:75007857-75008179:-|1.0163547903811243|0.0087404458491005|6.86|150.0|21|2|anti-sense MSMS UPN47_class_I_Rep_2 3 553.2506103515625 2 553.2531 1104.49165 NaN NaN NaN NaN NaN NaN NaN 58.968 1 62.25 61.75 62.75 3.2818 0 0 0 0.40604 1 13691 13691 2.5775 0 1 + 55446 17015 34789 34807 63711 63711 -0.056419213394292456 YDYVIFDVN 9 Unmodified _YDYVIFDVN_ 0 0 0 Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|16|2|sense Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|16|2|sense Tigger1_dup4244|chr5:93628349-93629525:-|1.0473300568878885|0.0569106384894115|4.2|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 574.2689819335938 2 574.268947 1146.52334 0.53762 0.00030874 -0.19834 -0.0001139 0.33928 0.00019484 574.2687693629782 61.631 0.99258 65.105 64.698 65.69 3.4738 152 82 2 0 0 0 0.42249 1 13604 13604 6.7232 0.51738 1 518940 55447 33094 34790 34808 63712 63712 -0.044059733761287134 YDYWPFSFI 9 Unmodified _YDYWPFSFI_ 0 0 0 ENST00000418115.5_1_3:49397482-49397617:-|nuORF ENST00000418115.5_1_3:49397482-49397617:-|nuORF ENST00000418115.5_1_3:49397482-49397617:-|nuORF MSMS UPN48_class_I_Rep_3 7 619.2802124023438 2 619.281857 1236.54916 NaN NaN NaN NaN NaN NaN NaN 19.055 1 22.642 22.142 23.142 3.5874 0 0 0 0.4007 1 1370 1370 0.52476 0 1 55448 6663 34791 34809 63713 63713 -0.05965079133852669 YEARFSNLY 9 Unmodified _YEARFSNLY_ 0 0 0 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant;nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_1 2 581.780517578125 2 581.780013 1161.54547 -0.038669 -2.2497E-05 0.18105 0.00010533 0.14238 8.2833E-05 581.7800548489878 38.555 2.2626 42.22 41.78 44.043 3.6652 361 161 4 0 0 0 0.28552 1 7783 7783 14.838 3.198 1 896330 55449 1298 34792 34810 63714 63714 -0.028837489076977363 YEARFSNLY 9 Unmodified _YEARFSNLY_ 0 0 0 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant;nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 581.7798461914062 2 581.780013 1161.54547 0.045194 2.6293E-05 0.17308 0.0001007 0.21827 0.00012699 581.7800540568915 38.922 2.2633 42.301 41.894 44.157 3.3785 333 147 3 0 0 0 0.36392 1 7990 7990 10.074 2.1638 1 703400 55450 1298 34792 34810 63715 63715 -0.028837489076977363 YEARFSNLY 9 Unmodified _YEARFSNLY_ 0 0 0 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant;nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2 NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant NID2|p.D925Gfs*8|1|0.06|ENSG00000087303|chr14:52020079-52020080|-/C|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_3 4 581.7800903320312 2 581.780013 1161.54547 -0.042504 -2.4728E-05 0.2726 0.00015859 0.2301 0.00013387 581.7800800259877 39.071 2.2732 42.309 41.864 44.137 3.2379 351 154 4 0 0 0 0.36392 1 8071 8071 10.074 1.3285 1 595250 55451 1298 34792 34810 63716 63716 -0.028837489076977363 YEATTAYF 8 Unmodified _YEATTAYF_ 0 0 0 REV__L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|62|3|sense REV__L1PBa_dup954|chr6:144524511-144526817:-|1.0678659403562782|0.0486614740999101|4.46|151.0|62|3|sense MSMS UPN47_class_I_Rep_3 4 483.2138366699219 2 483.216183 964.417813 NaN NaN NaN NaN NaN NaN NaN 26.088 1 29.435 28.935 29.935 3.3478 0 0 0 0.40625 1 3766 3766 2.3027 0 1 + 55452 30666 34793 34811 63717 63717 -0.06581889501762817 YEAVKKKV 8 Unmodified _YEAVKKKV_ 0 0 0 REV__ENST00000513565.6_1_5:122694091-122724023:-|nuORF REV__ENST00000513565.6_1_5:122694091-122724023:-|nuORF MSMS UPN47_class_I_Rep_2 3 482.7958068847656 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.39 117.89 118.89 3.5039 0 0 0 0.40746 1 27990 27990 0.69038 0 1 + 55453 20291 34794 34812 63718 63718 0.09207234828284072 YEAYLPETF 9 Unmodified _YEAYLPETF_ 0 0 0 nc|ENSG00000084070|Q8WU79-3|SMAP2;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2 nc|ENSG00000084070|Q8WU79-3|SMAP2 nc|ENSG00000084070|Q8WU79-3|SMAP2 MULTI-MSMS UPN46_class_I_Rep_3 1 566.763671875 2 566.763497 1131.51244 0.43018 0.00024381 0.035198 1.9949E-05 0.46538 0.00026376 566.7634815349536 75.539 0.40911 75.539 75.295 75.705 0 62 40 2 0 0 0 0.28552 3 17529 17529;17570;17606 14.838 7.549 1 201200 55454 1249 34795 34813 63719;63720;63721 63719 -0.048053757504249006 YECDKDLISR 10 Unmodified _YECDKDLISR_ 0 0 0 L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|67|3|sense L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|67|3|sense L1PA15_dup712|chr2:57975757-57978094:-|1.206755588147947|0.0565674445478962|4.42|151.0|67|3|sense MSMS UPN47_class_I_Rep_2 3 621.29736328125 2 621.29517 1240.57579 NaN NaN NaN NaN NaN NaN NaN 44.869 1 48.225 47.725 48.725 3.3556 0 0 0 0.53105 1 9400 9400 1.1933 0.23107 1 55455 13971 34796 34814 63722 63722 -0.03487758304822819 YEDGSIRIF 9 Unmodified _YEDGSIRIF_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS UPN46_class_I_Rep_3 1 550.7476806640625 2 550.274564 1098.53457 0.32874 0.00018089 0.09982 5.4928E-05 0.42856 0.00023582 550.2745240098316 61.702 0.33001 61.702 61.532 61.862 0 52 31 3 0 0 0 0.095207 1 13719 13719 34.932 17.99 1 215080 55456 1003 34797 34815 63723 63723 -0.010751512820206699 YEDGSIRIF 9 Unmodified _YEDGSIRIF_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS UPN46_class_I_Rep_3 1 550.2738037109375 2 550.274564 1098.53457 NaN NaN NaN NaN NaN NaN NaN 61.873 1 61.873 61.373 62.373 0 0 0 0 0.098423 1 13799 13799 24.991 8.0487 1 55457 1003 34797 34815 63724 63724 -0.010751512820206699 YEDRIFANT 9 Unmodified _YEDRIFANT_ 0 0 0 ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4 ENST00000523958.5_1_8:23291828-23307413:-|nuORF ENST00000523958.5_1_8:23291828-23307413:-|nuORF MSMS UPN47_class_I_Rep_3 4 564.7697143554688 2 564.769645 1127.52474 NaN NaN NaN NaN NaN NaN NaN 35.832 1 39.086 38.586 39.586 3.2547 0 0 0 0.39518 1 6684 6684 1.8442 0 1 55458 5356 34798 34816 63725 63725 -0.03392339287370305 YEEFVQMM 8 2 Oxidation (M) _YEEFVQM(Oxidation (M))M(Oxidation (M))_ YEEFVQM(1)M(1) YEEFVQM(55)M(55) 0 0 2 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MSMS UPN46_class_I_Rep_3 1 554.7201538085938 2 554.719918 1107.42528 NaN NaN NaN NaN NaN NaN NaN 46.055 1 46.055 45.555 46.555 0 0 0 0 0.033157 1 9413 9413 54.774 31.625 1 55459 3334 34799 34817 63726 63726 104;105 -0.12413241287981691 YEEFVQMM 8 2 Oxidation (M) _YEEFVQM(Oxidation (M))M(Oxidation (M))_ YEEFVQM(1)M(1) YEEFVQM(50)M(50) 0 0 2 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MSMS UPN46_class_I_Rep_3 1 554.7206420898438 2 554.719918 1107.42528 NaN NaN NaN NaN NaN NaN NaN 46.178 1 46.178 45.678 46.678 0 0 0 0 0.10209 1 9448 9448 49.933 36.425 1 55460 3334 34799 34817 63727 63727 104;105 -0.12413241287981691 YEEIASINGQ 10 Unmodified _YEEIASINGQ_ 0 0 0 L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|105|3|sense;L1PA6_dup4194|chr10:75515701-75521837:-|10.9505464623769|0.0574793887350666|7.57|151.0|133|3|sense L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|105|3|sense L1P3_dup2012|chrX:57242460-57246636:+|2.796985101788931|0.3040514109715874|3.2|151.0|105|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.2672119140625 2 562.266936 1122.51932 0.045907 2.5812E-05 0.027777 1.5618E-05 0.073684 4.143E-05 562.2668830674975 34.161 0.28807 37.601 37.473 37.761 3.4398 30 21 2 0 0 0 0.56333 1 6174 6174 1.4819 0 1 48750 55461 13527 34800 34818 63728 63728 -0.03704062869860536 YEEILNTKL 9 Unmodified _YEEILNTKL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MSMS UPN48_class_I_Rep_2 6 561.805419921875 2 561.805697 1121.59684 NaN NaN NaN NaN NaN NaN NaN 52.782 1 56.392 55.892 56.892 3.6098 0 0 0 0.087549 1 10999 10999 27.223 1.8239 1 55462 2900 34801 34819 63729 63729 0.04090575066334168 YEEILNTKL 9 Unmodified _YEEILNTKL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-SECPEP UPN48_class_I_Rep_3 7 562.2747192382812 2 561.805697 1121.59684 0.28931 0.00016254 0.60807 0.00034162 0.89739 0.00050416 561.805748372107 52.702 0.36552 56.3 56.113 56.479 3.5979 34 23 2 0 0 0 0.050413 1 10883 10883 38.615 8.7742 1 91999 55463 2900 34801 34819 63730 63730 0.04090575066334168 YEELKLNTL 9 Unmodified _YEELKLNTL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000427434.1_1_2:88003905-88005433:+|nuORF;ENSG00000153107.13,ANAPC1,chr2,-,I25.1,111821757,111822421|25|5.5|1|intron;ENSG00000153107.13,ANAPC1,chr2,-,I27.1,111815642,111818839|50|6.53|6|intron;ENST00000454465.1_1_2:87355723-87398314:+|nuORF;ENSG00000153107.13,ANAPC1,chr2,-,I27.1,111815642,111818839|50|6.53|1|intron;ENSG00000153107.13,ANAPC1,chr2,-,I27.1,111815642,111818839|50|6.53|5|intron;ENSG00000153107.13,ANAPC1,chr2,-,I27.1,111815642,111818839|50|6.53|3|intron;ENSG00000153107.13,ANAPC1,chr2,-,I27.1,111815642,111818839|50|6.53|2|intron ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MSMS UPN48_class_I_Rep_1 5 561.8046875 2 561.805697 1121.59684 NaN NaN NaN NaN NaN NaN NaN 52.908 1 56.428 55.928 56.928 3.5192 0 0 0 0.25702 1 11051 11051 13.042 0 1 55464 3638 34802 34820 63731 63731 0.04090575066334168 YEELVRMVL 9 Oxidation (M) _YEELVRM(Oxidation (M))VL_ YEELVRM(1)VL YEELVRM(46)VL 0 0 1 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_1 5 584.8088989257812 2 584.307549 1166.60055 0.48725 0.00028471 -0.052611 -3.0741E-05 0.43464 0.00025397 584.307479276361 56.391 0.52651 59.892 59.54 60.067 3.5014 106 41 3 0 0 0 0.05757 1 12102 12102 45.74 34.1 1 248700 55465 16644 34803 34821 63732 63732 181 0.023909215685534946 YEELVRMVL 9 Oxidation (M) _YEELVRM(Oxidation (M))VL_ YEELVRM(1)VL YEELVRM(46)VL 0 0 1 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-SECPEP UPN48_class_I_Rep_1 5 584.8088989257812 2 584.307549 1166.60055 0.48725 0.00028471 -0.052611 -3.0741E-05 0.43464 0.00025397 584.307479276361 56.391 0.52651 59.892 59.54 60.067 3.5014 106 41 3 0 0 0 0.044231 1 12102 12102 45.74 34.1 1 248700 55466 16644 34803 34821 63733 63733 181 0.023909215685534946 YEELVRMVL 9 Oxidation (M) _YEELVRM(Oxidation (M))VL_ YEELVRM(1)VL YEELVRM(62)VL 0 0 1 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_2 6 584.3072509765625 2 584.307549 1166.60055 0.59656 0.00034858 -0.047275 -2.7623E-05 0.54929 0.00032095 584.3074032758232 56.256 0.47429 59.79 59.589 60.063 3.5333 83 38 3 0 0 0 0.022868 1 12074 12074 61.602 40.065 1 204830 55467 16644 34803 34821 63734 63734 181 0.023909215685534946 YEELVRMVL 9 Oxidation (M) _YEELVRM(Oxidation (M))VL_ YEELVRM(1)VL YEELVRM(46)VL 0 0 1 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MSMS UPN48_class_I_Rep_3 7 584.3074340820312 2 584.307549 1166.60055 0.39375 0.00023007 0.085861 5.0169E-05 0.47961 0.00028024 584.3074331811323 56.143 0.65894 59.699 59.382 60.041 3.5554 114 54 3 0 0 0 0.05757 1 11978 11978 45.74 34.1 1 334930 55468 16644 34803 34821 63735 63735 181 0.023909215685534946 YEELVRMVL 9 Oxidation (M) _YEELVRM(Oxidation (M))VL_ 0 0 1 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 nc|ENSG00000092841|P60660-2|MYL6 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 584.307549 1166.60055 0.5995 0.0003503 0.32184 0.00018806 0.92135 0.00053835 584.3073396252751 56.031 0.14652 59.564 59.443 59.589 3.5333 -0.15434 0.00032923 NaN 45.74 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 111830 55469 16644 34803 34821 181 0.023909215685534946 YEEMLKEGY 9 Oxidation (M) _YEEM(Oxidation (M))LKEGY_ YEEM(1)LKEGY YEEM(61)LKEGY 0 0 1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1 ENST00000512567.5_1_4:76407750-76419412:-|nuORF ENST00000512567.5_1_4:76407750-76419412:-|nuORF MSMS UPN46_class_I_Rep_3 1 589.2573852539062 2 589.257722 1176.50089 NaN NaN NaN NaN NaN NaN NaN 37.79 1 37.79 37.29 38.29 0 0 0 0 0.0011614 1 7142 7142 61.09 26.987 1 55470 4036 34804 34822 63736 63736 127 -0.0802994083608155 YEFFNEQKY 9 Unmodified _YEFFNEQKY_ 0 0 0 nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MSMS UPN46_class_I_Rep_3 1 634.7869262695312 2 634.285128 1266.5557 0.63957 0.00040567 -0.70447 -0.00044684 -0.064906 -4.1169E-05 634.2845492106457 57.435 0.037846 57.435 57.404 57.442 0 5 3 2 0 0 0 0.279 1 12586 12586 15.248 1.3424 1 74406 55471 5136 34805 34823 63737 63737 -0.06691185973136271 YEGLIRRNF 9 Unmodified _YEGLIRRNF_ 0 0 0 REV__MLT1A_dup1776|chr3:142333587-142334028:+|1.0287353358155475|0.0970672100872023|3.41|150.0|26|1|anti-sense REV__MLT1A_dup1776|chr3:142333587-142334028:+|1.0287353358155475|0.0970672100872023|3.41|150.0|26|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3190307617188 2 584.317097 1166.61964 NaN NaN NaN NaN NaN NaN NaN 38.175 1 38.175 37.675 38.675 0 0 0 0 0.39598 1 7245 7245 1.6526 0 1 + 55472 31583 34806 34824 63738 63738 0.04299638974453046 YEGPVEPLS 9 Unmodified _YEGPVEPLS_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955017089844 2 495.742565 989.470577 0.13401 6.6436E-05 -0.5582 -0.00027672 -0.42419 -0.00021029 495.7420856967455 33.987 0.4991 33.987 33.792 34.291 0 54 33 2 0 0 0 0.41259 1 5958 5958 7.2892 0 1 98908 + + 55473 17470 34807 34825 63739 63739 -0.024579314389370666 YEHQLIPLF 9 Unmodified _YEHQLIPLF_ 0 0 0 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 nc|ENSG00000256453|Q8IYX4|DND1 MULTI-SECPEP UPN48_class_I_Rep_1 5 580.3109130859375 2 580.310949 1158.60735 0.46774 0.00027143 -0.38981 -0.00022621 0.077927 4.5222E-05 580.8121053860293 67.836 0.54837 71.287 70.997 71.545 3.4517 49 39 2 0 0 0 0.12099 1 15643 15643 6.7232 0 1 139740 55474 16843 34808 34826 63740 63740 0.034386025114145014 YEHTLRTL 8 Unmodified _YEHTLRTL_ 0 0 0 REV__nc|ENSG00000198055|P43250-3|GRK6 REV__nc|ENSG00000198055|P43250-3|GRK6 MSMS UPN47_class_I_Rep_1 2 516.7775268554688 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 43.89 1 47.585 47.085 48.085 3.6951 0 0 0 0.40527 1 9071 9071 3.5965 0 1 + 55475 21110 34809 34827 63741 63741 0.025485723004976535 YEIHSRLFSS 10 Unmodified _YEIHSRLFSS_ 0 0 0 ENSG00000154493|ENST00000488181|C10orf90 ENSG00000154493|ENST00000488181|C10orf90 ENSG00000154493|ENST00000488181|C10orf90 MULTI-SECPEP UPN47_class_I_Rep_3 4 620.3126831054688 2 619.811845 1237.60914 0.50348 0.00031207 -0.72047 -0.00044656 -0.21699 -0.00013449 619.8113692325858 52.966 0.44894 56.16 55.957 56.406 3.1948 36 26 2 0 0 0 0.84575 1 11973 11973 2.7352 1.2533 1 114740 55476 3675 34810 34828 63742 63742 -0.0001638847061258275 YEILNNPEL 9 Unmodified _YEILNNPEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MSMS UPN48_class_I_Rep_1 5 552.7825317382812 2 552.782222 1103.54989 NaN NaN NaN NaN NaN NaN NaN 65.521 1 68.972 68.472 69.472 3.4516 0 0 0 0.13348 1 14912 14912 20.581 9.7814 1 55477 2844 34811 34829 63743 63743 0.0022571551517103217 YEILNNPEL 9 Unmodified _YEILNNPEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MSMS UPN48_class_I_Rep_1 5 552.782470703125 2 552.782222 1103.54989 NaN NaN NaN NaN NaN NaN NaN 65.642 1 69.093 68.593 69.593 3.4516 0 0 0 0.11743 1 14949 14949 21.59 10.791 1 55478 2844 34811 34829 63744 63744 0.0022571551517103217 YEILNNPEL 9 Unmodified _YEILNNPEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MSMS UPN48_class_I_Rep_1 5 552.7822265625 2 552.782222 1103.54989 NaN NaN NaN NaN NaN NaN NaN 65.662 1 69.113 68.613 69.613 3.4516 0 0 0 0.098956 1 14954 14954 24.882 10.476 1 55479 2844 34811 34829 63745 63745 0.0022571551517103217 YEILNNPEL 9 Unmodified _YEILNNPEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS UPN48_class_I_Rep_2 6 552.7835693359375 2 552.782222 1103.54989 0.52172 0.0002884 0.85167 0.00047079 1.3734 0.00075919 552.7821156382586 65.418 0.32558 68.897 68.684 69.01 3.4792 40 24 2 0 0 0 0.14474 2 14854 14854;14875 26.021 15.221 1 151880 55480 2844 34811 34829 63746;63747 63746 0.0022571551517103217 YEILNNPEL 9 Unmodified _YEILNNPEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MSMS UPN48_class_I_Rep_3 7 552.7830810546875 2 552.782222 1103.54989 NaN NaN NaN NaN NaN NaN NaN 65.32 1 68.828 68.328 69.328 3.5077 0 0 0 0.072238 1 14752 14752 30.703 16.797 1 55481 2844 34811 34829 63748 63748 0.0022571551517103217 YEILNYCSI 9 Unmodified _YEILNYCSI_ 0 0 0 REV__L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|113|2|anti-sense REV__L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|113|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.265869140625 2 559.26535 1116.51615 0.39085 0.00021859 -0.070056 -3.918E-05 0.32079 0.00017941 559.2652414983811 73.792 1.1347 77.178 76.52 77.655 3.3861 186 104 3 0 0 0 0.41259 1 18245 18245 7.2892 0 1 449580 + 55482 26250 34812 34830 63749 63749 -0.03745029248239007 YEILYWVP 8 Unmodified _YEILYWVP_ 0 0 0 nc|ENSG00000066629|O00423-3|EML1;ENSG00000066629|ENST00000262233|EML1 nc|ENSG00000066629|O00423-3|EML1 nc|ENSG00000066629|O00423-3|EML1 MULTI-MSMS UPN48_class_I_Rep_2 6 541.7826538085938 2 541.781493 1081.54843 0.38144 0.00020666 0.27863 0.00015096 0.66006 0.00035761 541.781478723347 47.58 0.66078 51.316 51.049 51.709 3.7361 80 51 2 0 0 0 0.82752 1 9454 9454 5.2307 0.47466 1 154250 55483 1023 34813 34831 63750 63750 0.010921262170768387 YEITDIHWM 9 Unmodified _YEITDIHWM_ 0 0 0 REV__L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|129|2|sense REV__L1PA7_dup1532|chr2:159821746-159828118:+|1.8177149653280968|0.0359908755541482|5.66|151.0|129|2|sense MSMS UPN48_class_I_Rep_1 5 604.2763671875 2 604.276249 1206.53795 NaN NaN NaN NaN NaN NaN NaN 29.235 1 32.785 32.285 33.285 3.5499 0 0 0 0.40038 1 4033 4033 0.6015 0 1 + 55484 30030 34814 34832 63751 63751 -0.05706224499658674 YEKDIAAY 8 Unmodified _YEKDIAAY_ 0 0 0 ENST00000522557.1_1_20:56063450-56063633:-|nuORF;ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1 ENST00000522557.1_1_20:56063450-56063633:-|nuORF ENST00000522557.1_1_20:56063450-56063633:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 486.7372131347656 2 486.737283 971.460012 0.16485 8.0239E-05 0.16606 8.0827E-05 0.33091 0.00016107 486.73715892467743 36.31 0.82437 36.31 36.024 36.849 0 153 70 4 0 0 0 0.82752 5 6812 6651;6688;6730;6766;6812 41.84 14.211 1 468340 55485 4082 34815 34833 63752;63753;63754;63755;63756 63756 -0.026859140933879644 YEKDPRLYF 9 Unmodified _YEKDPRLYF_ 0 0 0 ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5 ENSG00000244405|ENST00000306376|ETV5 ENSG00000244405|ENST00000306376|ETV5 MULTI-MSMS UPN48_class_I_Rep_1 5 615.814697265625 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.28552 1 15620 15620 14.838 1.7958 1 904810 55486 5728 34816 34834 63757 63757 0.002453971604609251 YEKERERE 8 Unmodified _YEKERERE_ 0 0 0 REV__L1MC4_dup22613|chr18:57756598-57758024:-|3.171142584488853|0.0450060164704323|6.14|151.0|43|3|sense REV__L1MC4_dup22613|chr18:57756598-57758024:-|3.171142584488853|0.0450060164704323|6.14|151.0|43|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.2919311523438 2 569.778002 1137.54145 0.083628 4.765E-05 0.53896 0.00030709 0.62258 0.00035473 569.77829754553 45.035 0.23471 48.735 48.585 48.82 3.6999 20 14 2 0 0 0 0.82752 1 9425 9425 7.9102 7.9102 1 47621 + 55487 26882 34817 34835 63758 63758 -0.02181838401429559 YEKILVAL 8 Unmodified _YEKILVAL_ 0 0 0 ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF ENSG00000135046|ENST00000257497|ANXA1 ENSG00000135046|ENST00000257497|ANXA1 MULTI-SECPEP UPN46_class_I_Rep_3 1 474.79205322265625 2 474.791861 947.569169 0.18847 8.9485E-05 0.27245 0.00012936 0.46092 0.00021884 474.7919684237518 64.415 0.1498 64.415 64.374 64.524 0 28 17 2 0 0 0 0.72333 1 14527 14527 15.847 0 1 145130 55488 2883 34818 34836 63759 63759 0.09328716596769482 YEKLLQNI 8 Unmodified _YEKLLQNI_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.7899475097656 2 510.78985 1019.56515 0.24923 0.0001273 -0.082812 -4.2299E-05 0.16642 8.5004E-05 510.7896865139155 75.934 0.71521 79.337 79.024 79.739 3.4034 150 67 3 0 0 0 0.82752 1 18717 18717 22.736 0 1 324460 + 55489 29072 34819 34837 63760 63760 0.056146271030456774 YEKLLQNI 8 Unmodified _YEKLLQNI_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense MSMS UPN47_class_I_Rep_1 2 510.7892761230469 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.555 1 79.97 79.47 80.47 3.4149 0 0 0 0.39615 1 18951 18951 9.3831 0 1 + 55490 29072 34819 34837 63761 63761 0.056146271030456774 YEKLLQNI 8 Unmodified _YEKLLQNI_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense MSMS UPN47_class_I_Rep_2 3 510.7903747558594 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.713 1 80.044 79.544 80.544 3.3315 0 0 0 0.37552 1 18997 18997 16.149 0 1 + 55491 29072 34819 34837 63762 63762 0.056146271030456774 YEKLLQNI 8 Unmodified _YEKLLQNI_ 0 0 0 REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense REV__L1PA12_dup533|chr4:106103721-106109008:+|1.0268671835105752|0.3467799018843517|1.57|149.0|58|1|sense MSMS UPN47_class_I_Rep_3 4 510.79022216796875 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 76.916 1 80.185 79.685 80.685 3.269 0 0 0 0.38875 1 19139 19139 12.241 0 1 + 55492 29072 34819 34837 63763 63763 0.056146271030456774 YEKPWRLEDI 10 Unmodified _YEKPWRLEDI_ 0 0 0 L1M4_dup9396|chr9:3477238-3479318:-|2.3734339847186945|0.1221164121458064|4.28|151.0|42|2|sense L1M4_dup9396|chr9:3477238-3479318:-|2.3734339847186945|0.1221164121458064|4.28|151.0|42|2|sense L1M4_dup9396|chr9:3477238-3479318:-|2.3734339847186945|0.1221164121458064|4.28|151.0|42|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.2346496582031 3 450.23471 1347.6823 0.031367 1.4123E-05 -0.30801 -0.00013868 -0.27665 -0.00012456 450.23439393816557 100.13 0.17939 103.62 103.56 103.74 3.4974 30 24 2 0 0 0 0.5652 1 24508 24508 0.15932 0 1 135240 55493 8924 34820 34838 63764 63764 0.02236740251964875 YEKYKFTL 8 Unmodified _YEKYKFTL_ 0 0 0 REV__HAL1M8_dup1203|chrX:70160249-70161328:+|1.3798957509052776|0.2878504427573558|2.26|151.0|19|2|sense REV__HAL1M8_dup1203|chrX:70160249-70161328:+|1.3798957509052776|0.2878504427573558|2.26|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 545.8065795898438 2 546.292225 1090.5699 NaN NaN NaN NaN NaN NaN NaN 48.306 1 51.939 51.439 52.439 3.6339 0 0 0 0.40659 1 9575 9575 1.8442 0 1 + 55494 23461 34821 34839 63765 63765 0.028235112458105505 YELAPNLVP 9 Unmodified _YELAPNLVP_ 0 0 0 ENSG00000136425|ENST00000258930|CIB2;nc|ENSG00000136425|O75838-2|CIB2 ENSG00000136425|ENST00000258930|CIB2 ENSG00000136425|ENST00000258930|CIB2 MSMS UPN48_class_I_Rep_2 6 508.2760925292969 2 508.276575 1014.5386 NaN NaN NaN NaN NaN NaN NaN 62.241 1 65.715 65.215 66.215 3.4738 0 0 0 0.35339 1 13893 13893 7.9102 0.62092 1 55495 2969 34822 34840 63766 63766 0.03190938211696448 YELDFSHF 8 Unmodified _YELDFSHF_ 0 0 0 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 MSMS UPN46_class_I_Rep_3 1 529.2355346679688 2 529.234907 1056.45526 NaN NaN NaN NaN NaN NaN NaN 71.439 1 71.439 70.939 71.939 0 0 0 0 0.39819 1 16456 16456 8.5933 0 1 55496 3025 34823 34841 63767 63767 -0.07070798236145492 YELDFSHF 8 Unmodified _YELDFSHF_ 0 0 0 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 MSMS UPN46_class_I_Rep_3 1 529.2349243164062 2 529.234907 1056.45526 NaN NaN NaN NaN NaN NaN NaN 71.551 1 71.551 71.051 72.051 0 0 0 0 0.39819 1 16489 16489 8.5933 0 1 55497 3025 34823 34841 63768 63768 -0.07070798236145492 YELERRFK 8 Unmodified _YELERRFK_ 0 0 0 ENSG00000183072|ENST00000329198|NKX2-5;ENSG00000125816|ENST00000351817|NKX2-4;nc|ENSG00000136352|P43699|NKX2-1;ENSG00000136352|ENST00000354822|NKX2-1 ENSG00000183072|ENST00000329198|NKX2-5 ENSG00000183072|ENST00000329198|NKX2-5 MULTI-MSMS UPN48_class_I_Rep_1 5 570.8116455078125 2 570.811648 1139.60874 0.4106 0.00023437 -0.078135 -4.4601E-05 0.33246 0.00018977 570.8116213117154 43.195 0.6489 46.706 46.406 47.055 3.5103 94 51 2 0 0 0 0.82752 1 8138 8138 2.0598 2.0598 1 220840 55498 2516 34824 34842 63769 63769 0.04452236600195647 YELFWFHM 8 Unmodified _YELFWFHM_ 0 0 0 L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|232|2|anti-sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|232|2|anti-sense L1PA10_dup1527|chr4:15819342-15824295:+|21.057348819556037|0.1665592581545079|6.98|151.0|232|2|anti-sense MSMS UPN48_class_I_Rep_1 5 586.7650756835938 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 27.591 1 31.154 30.654 31.654 3.5629 0 0 0 0.40738 1 3577 3577 0.79363 0 1 55499 13587 34825 34843 63770 63770 -0.06280984457544037 YELGRQKLLR 10 Unmodified _YELGRQKLLR_ 0 0 0 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-MSMS UPN48_class_I_Rep_3 7 638.3798217773438 2 638.380229 1274.7459 0.54724 0.00034935 -0.23658 -0.00015103 0.31066 0.00019832 638.3800254190818 44.382 0.69888 48.02 47.644 48.343 3.6372 79 48 2 0 0 0 0.56486 1 8287 8287 0.40072 0 1 185170 55500 3813 34826 34844 63771 63771 0.11952145479745013 YELIRTFN 8 Unmodified _YELIRTFN_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MSMS UPN47_class_I_Rep_3 4 528.2780151367188 2 528.279649 1054.54475 NaN NaN NaN NaN NaN NaN NaN 29.543 1 32.867 32.367 33.367 3.3235 0 0 0 0.40604 1 4791 4791 2.5775 0 1 + 55501 19908 34827 34845 63772 63772 0.0196545644323578 YELRLVIDL 9 Unmodified _YELRLVIDL_ 0 0 0 ENST00000517873.2_1_8:47884723-47885119:-|nuORF ENST00000517873.2_1_8:47884723-47885119:-|nuORF ENST00000517873.2_1_8:47884723-47885119:-|nuORF MSMS UPN48_class_I_Rep_1 5 567.3306884765625 2 567.331882 1132.64921 NaN NaN NaN NaN NaN NaN NaN 81.568 1 85.13 84.63 85.63 3.5624 0 0 0 0.38784 1 19453 19453 3.5965 0 1 55502 7212 34828 34846 63773 63773 0.0881915819995811 YELYYHSF 8 Unmodified _YELYYHSF_ 0 0 0 REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|199|2|anti-sense REV__L1MD1_dup4136|chrX:135561253-135564445:-|2.5496556469405527|0.1401119670000373|4.19|151.0|199|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 561.2495727539062 2 561.250557 1120.48656 0.17452 9.7948E-05 -0.56143 -0.0003151 -0.38691 -0.00021715 561.2502168665436 29.794 0.51974 29.794 29.513 30.033 0 77 44 2 0 0 0 0.82752 1 4724 4724 4.756 0.81161 1 110130 + 55503 27337 34829 34847 63774 63774 -0.06886225202038077 YEMKYIYWLKK 11 Unmodified _YEMKYIYWLKK_ 0 0 0 REV__L1PB1_dup3358|chr4:105168590-105170143:-|1.6594071184348536|0.0633415582084924|4.71|151.0|33|2|sense REV__L1PB1_dup3358|chr4:105168590-105170143:-|1.6594071184348536|0.0633415582084924|4.71|151.0|33|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 522.7315673828125 3 522.279262 1563.81596 -0.14482 -7.5636E-05 0.04562 2.3827E-05 -0.099198 -5.1809E-05 522.2807768610827 30.243 0.14087 33.988 33.943 34.084 3.7449 11 8 2 0 0 0 22.551 1 4927 4927 0.094841 0 1 37905 + 55504 30382 34830 34848 63775 63775 0.05660263033337287 YENFVSIWY 9 Unmodified _YENFVSIWY_ 0 0 0 L1MEf_dup11571|chr21:37402042-37402752:-|1.186827389852816|0.0178416074970926|6.06|151.0|48|3|anti-sense L1MEf_dup11571|chr21:37402042-37402752:-|1.186827389852816|0.0178416074970926|6.06|151.0|48|3|anti-sense L1MEf_dup11571|chr21:37402042-37402752:-|1.186827389852816|0.0178416074970926|6.06|151.0|48|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 407.1841125488281 3 407.525602 1219.55498 -0.49617 -0.0002022 -0.05165 -2.1049E-05 -0.54782 -0.00022325 407.5255892133182 23.381 0.27 27.085 26.944 27.214 3.7042 31 22 2 0 0 0 0.12447 1 2841 2841 2.4985 0 1 58161 55505 13245 34831 34849 63776 63776 -0.046019806221693216 YENFVSIWY 9 Unmodified _YENFVSIWY_ 0 0 0 L1MEf_dup11571|chr21:37402042-37402752:-|1.186827389852816|0.0178416074970926|6.06|151.0|48|3|anti-sense L1MEf_dup11571|chr21:37402042-37402752:-|1.186827389852816|0.0178416074970926|6.06|151.0|48|3|anti-sense L1MEf_dup11571|chr21:37402042-37402752:-|1.186827389852816|0.0178416074970926|6.06|151.0|48|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 407.525602 1219.55498 -1.0001 -0.00040758 0.6736 0.00027451 -0.32652 -0.00013307 407.5258024361651 23.609 0.32819 27.074 26.903 27.231 3.4655 -0.0053146 0.00012868 NaN 2.4985 52 30 2 NaN NaN NaN NaN 0 NaN NaN 0 34381 55506 13245 34831 34849 -0.046019806221693216 YENINKIIKLL 11 Unmodified _YENINKIIKLL_ 0 0 0 L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|7|1|sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|7|1|sense L1ME3A_dup6841|chr7:75430025-75430794:+|1.1839665390759488|0.0151507634704716|6.29|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 454.2798156738281 3 454.278139 1359.81259 NaN NaN NaN NaN NaN NaN NaN 39.911 1 43.415 42.915 43.915 3.5048 0 0 0 0.38417 1 7103 7103 1.2148 0 1 55507 12681 34832 34850 63777 63777 0.1470733625099001 YENQKQSSY 9 Unmodified _YENQKQSSY_ 0 0 0 nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 nc|ENSG00000270647|Q92804-2|TAF15 MULTI-MSMS UPN46_class_I_Rep_3 1 574.2590942382812 2 573.756735 1145.49892 -0.074447 -4.2715E-05 -0.041382 -2.3743E-05 -0.11583 -6.6458E-05 573.7564827261531 16.463 0.43687 16.463 16.185 16.622 0 89 50 2 0 0 0 0.25805 5 1142 1104;1110;1137;1142;1167 16.566 7.1828 1 44456 55508 5809 34833 34851 63778;63779;63780;63781;63782 63781 -0.06801233529654382 YEPFAVNTN 9 Unmodified _YEPFAVNTN_ 0 0 0 nc|ENSG00000198626|Q92736-2|RYR2;ENSG00000198626|ENST00000366574|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 nc|ENSG00000198626|Q92736-2|RYR2 MSMS UPN46_class_I_Rep_3 1 527.7461547851562 2 527.745639 1053.47673 NaN NaN NaN NaN NaN NaN NaN 30.463 1 30.463 29.963 30.963 0 0 0 0 0.31276 1 4965 4965 10.074 1.4806 1 55509 5444 34834 34852 63783 63783 -0.04787413207418467 YEPHLGRV 8 Unmodified _YEPHLGRV_ 0 0 0 REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-SECPEP UPN47_class_I_Rep_1 2 485.8117370605469 2 485.758884 969.503215 0.16413 7.9726E-05 0.10438 5.0704E-05 0.26851 0.00013043 485.7567339180811 59.381 0.060318 62.779 62.735 62.795 3.3982 6 4 2 0 0 0 0.72333 1 13776 13776 2.3027 0 1 13585 + 55510 18229 34835 34853 63784 63784 0.017243204745795992 YEPPDWYLL 9 Unmodified _YEPPDWYLL_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-MSMS UPN48_class_I_Rep_1 5 598.789306640625 2 598.28714 1194.55973 0.46095 0.00027578 -0.071464 -4.2756E-05 0.38949 0.00023303 598.7889129438116 70.234 0.28091 73.694 73.449 73.73 3.4598 32 23 2 0 0 0 0.41259 1 16329 16329 7.2892 0 1 111590 + 55511 19309 34836 34854 63785 63785 -0.02977096479435204 YEQFDKVFD 9 Unmodified _YEQFDKVFD_ 0 0 0 REV__ENST00000479103.1_1_10:124757958-124758141:-|nuORF REV__ENST00000479103.1_1_10:124757958-124758141:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 595.77099609375 2 595.771854 1189.52915 0.43485 0.00025907 0.19736 0.00011758 0.63221 0.00037665 595.7715446143122 38.331 0.34248 41.991 41.836 42.179 3.6595 53 31 2 0 0 0 0.47493 1 6569 6569 3.2813 1.2216 1 92353 + 55512 18053 34837 34855 63786 63786 -0.05802874864480145 YEQLLDVKL 9 Unmodified _YEQLLDVKL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN48_class_I_Rep_1 5 560.8168334960938 2 560.816064 1119.61758 0.56579 0.00031731 0.020115 1.1281E-05 0.58591 0.00032859 560.8163670064969 64.455 0.14609 67.909 67.818 67.964 3.4541 14 10 2 0 0 0 0.038834 1 14595 14595 53.47 0 1 139440 55513 2042 34838 34856 63787 63787 0.06255165445986677 YEQLLDVKL 9 Unmodified _YEQLLDVKL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN48_class_I_Rep_1 5 560.8164672851562 2 560.816064 1119.61758 0.56286 0.00031566 -0.032087 -1.7995E-05 0.53077 0.00029767 560.815952164018 64.582 0.29301 68.036 67.952 68.245 3.4541 37 21 2 0 0 0 0.038834 2 14642 14642;14689 53.47 0 1 184670 55514 2042 34838 34856 63788;63789 63788 0.06255165445986677 YEQLLDVKL 9 Unmodified _YEQLLDVKL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN48_class_I_Rep_2 6 560.8168334960938 2 560.816064 1119.61758 0.52957 0.00029699 -0.11062 -6.2038E-05 0.41895 0.00023495 560.815980384412 64.45 0.61032 67.924 67.698 68.308 3.4743 62 45 2 0 0 0 0.055861 4 14587 14543;14548;14587;14654 46.475 0 1 226200 55515 2042 34838 34856 63790;63791;63792;63793 63792 0.06255165445986677 YEQLLDVKL 9 Unmodified _YEQLLDVKL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS UPN48_class_I_Rep_3 7 560.81640625 2 560.816064 1119.61758 0.44693 0.00025065 -0.19845 -0.00011129 0.24848 0.00013935 560.8160425023508 64.305 0.28169 67.813 67.589 67.87 3.5083 35 24 2 0 0 0 0.0058187 2 14431 14392;14431 77.049 0 1 247290 55516 2042 34838 34856 63794;63795 63795 0.06255165445986677 YEQLLDVKL 9 Unmodified _YEQLLDVKL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MSMS UPN48_class_I_Rep_3 7 560.81689453125 2 560.816064 1119.61758 NaN NaN NaN NaN NaN NaN NaN 64.515 1 68.024 67.524 68.524 3.5083 0 0 0 0.028825 1 14511 14511 46.475 0 1 55517 2042 34838 34856 63796 63796 0.06255165445986677 YEQLMQLY 8 Oxidation (M) _YEQLM(Oxidation (M))QLY_ YEQLM(1)QLY YEQLM(72)QLY 0 0 1 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS UPN46_class_I_Rep_3 1 552.2578735351562 2 552.257525 1102.5005 0.33363 0.00018425 0.1436 7.9302E-05 0.47723 0.00026355 552.2575404302463 61.183 0.72037 61.183 60.803 61.523 0 125 85 2 0 0 0 0.82752 3 13565 13533;13565;13596 71.922 31.965 1 935630 55518 2118 34839 34857 63797;63798;63799 63798 72 -0.04665315765282685 YEQMNEQY 8 Unmodified _YEQMNEQY_ 0 0 0 REV__L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|60|2|sense REV__L1M2a_dup144|chr5:180000001-180002910:-|29.32526705847604|0.2900717777494449|6.66|151.0|60|2|sense MSMS UPN48_class_I_Rep_1 5 552.7164916992188 2 552.718764 1103.42298 NaN NaN NaN NaN NaN NaN NaN 118.36 1 121.98 121.48 122.48 3.6189 0 0 0 0.40625 1 28867 28867 2.3027 0.4585 1 + 55519 24258 34840 34858 63800 63800 -0.12459953701431914 YEQPLEFC 8 Unmodified _YEQPLEFC_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2 REV__ENSG00000164082|ENST00000395052|GRM2 MSMS UPN46_class_I_Rep_3 1 515.170654296875 2 514.723318 1027.43208 NaN NaN NaN NaN NaN NaN NaN 31.242 1 31.242 30.742 31.742 0 0 0 0 0.40746 1 5194 5194 0.69038 0 1 + 55520 20032 34841 34859 63801 63801 -0.08053560345115329 YEREINFLF 9 Unmodified _YEREINFLF_ 0 0 0 MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 615.8126220703125 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.11683 1 15572 15572 30.637 0 1 904810 55521 16466 34842 34860 63802 63802 0.002453971604609251 YEREINFLF 9 Unmodified _YEREINFLF_ 0 0 0 MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 615.8115844726562 2 615.811313 1229.60807 0.50558 0.00031134 0.38705 0.00023835 0.89263 0.00054969 615.8115992791977 67.314 0.94589 70.811 70.409 71.354 3.4964 187 74 3 0 0 0 0.15122 1 15432 15432 25.399 0 1 1019000 55522 16466 34842 34860 63803 63803 0.002453971604609251 YEREINFLF 9 Unmodified _YEREINFLF_ 0 0 0 MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MLT1J_dup9714|chr11:3912711-3913156:+|1.1085636886041188|0.0059564644058949|7.54|150.0|10|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 615.81201171875 2 615.811313 1229.60807 0.62552 0.0003852 0.26056 0.00016046 0.88608 0.00054566 615.8115476347172 67.293 0.96441 70.801 70.328 71.292 3.5077 191 78 3 0 0 0 0.082592 1 15416 15416 37.974 0 1 835100 55523 16466 34842 34860 63804 63804 0.002453971604609251 YERRRWLIKLR 11 Unmodified _YERRRWLIKLR_ 0 0 0 REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 530.3233032226562 3 530.323076 1587.9474 0.27146 0.00014396 0.08972 4.7581E-05 0.36118 0.00019154 530.3232212490329 52.062 0.31843 52.062 51.844 52.163 0 77 35 4 0 0 0 0.68491 1 11099 11099 0.08335 0.08335 1 1869000 + 55524 30009 34843 34861 63805 63805 0.17694254236107554 YERRRWLIKLR 11 Unmodified _YERRRWLIKLR_ 0 0 0 REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 530.3230590820312 3 530.323076 1587.9474 0.27034 0.00014337 0.16266 8.6264E-05 0.43301 0.00022963 530.3233137024864 52.202 0.18636 52.202 52.163 52.349 0 56 22 3 0 0 0 0.68491 1 11150 11150 0.08335 0.08335 1 3033900 + 55525 30009 34843 34861 63806 63806 0.17694254236107554 YERRRWLIKLR 11 Unmodified _YERRRWLIKLR_ 0 0 0 REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 530.6572265625 3 530.323076 1587.9474 0.26945 0.0001429 0.17304 9.1766E-05 0.44249 0.00023466 530.3233848236587 52.43 0.38242 52.43 52.34 52.722 0 69 45 3 0 0 0 0.68583 1 11211 11211 0 0 1 726190 + 55526 30009 34843 34861 63807 63807 0.17694254236107554 YERRRWLIKLR 11 Unmodified _YERRRWLIKLR_ 0 0 0 REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense REV__L1PA7_dup12046|chr16:81340381-81345749:+|1.1643801290499132|0.0901902888036476|3.69|151.0|47|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 530.3238525390625 3 530.323076 1587.9474 0.27146 0.00014396 0.08972 4.7581E-05 0.36118 0.00019154 530.3232212490329 52.062 0.31843 52.062 51.844 52.163 0 77 35 4 0 0 0 22.551 1 11064 11064 0.08335 0.08335 1 1869000 + 55527 30009 34843 34861 63808 63808 0.17694254236107554 YERSIVDY 8 Unmodified _YERSIVDY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS UPN46_class_I_Rep_3 1 522.7528686523438 2 522.753464 1043.49238 NaN NaN NaN NaN NaN NaN NaN 43.24 1 43.24 42.74 43.74 0 0 0 0 0.367 1 8618 8618 18.146 6.5061 1 55528 2657 34844 34862 63809 63809 -0.027631266903881624 YESMCECSSCC 11 Unmodified _YESMCECSSCC_ 0 0 0 ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF ENST00000498611.5_1_22:50657800-50659866:-|nuORF MSMS UPN46_class_I_Rep_3 1 622.6744384765625 2 622.67347 1243.33239 NaN NaN NaN NaN NaN NaN NaN 116.89 1 116.89 116.39 117.39 0 0 0 0 0.38417 1 28952 28952 0.30703 0.30703 1 55529 7122 34845 34863 63810 63810 -0.2795457339955192 YETFFFFV 8 Unmodified _YETFFFFV_ 0 0 0 REV__LTR40b_dup9|chr1:50942586-50943091:-|1.163176355464448|0.0131392519833835|6.47|151.0|30|3|anti-sense REV__LTR40b_dup9|chr1:50942586-50943091:-|1.163176355464448|0.0131392519833835|6.47|151.0|30|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.2776489257812 2 550.260394 1098.50623 NaN NaN NaN NaN NaN NaN NaN 94.652 1 94.652 94.152 95.152 0 0 0 0 0.40738 1 22960 22960 0.79363 0 1 + 55530 30918 34846 34864 63811 63811 -0.03907849191296009 YETQVKVM 8 Oxidation (M) _YETQVKVM(Oxidation (M))_ YETQVKVM(1) YETQVKVM(50) 0 0 1 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS UPN46_class_I_Rep_3 1 507.2524719238281 2 507.252243 1012.48993 0.097955 4.9688E-05 -0.30395 -0.00015418 -0.20599 -0.00010449 507.25212461100716 31.877 0.62032 31.877 31.665 32.285 0 87 45 3 0 0 0 0.82752 1 5420 5420 49.933 23.592 1 125560 55531 2344 34847 34865 63812 63812 79 -0.015812984196713842 YETVRNLKV 9 Unmodified _YETVRNLKV_ 0 0 0 L1MEc_dup14101|chr13:21452372-21453737:+|5.054990913070566|0.0325567613611099|7.28|151.0|5|1|sense L1MEc_dup14101|chr13:21452372-21453737:+|5.054990913070566|0.0325567613611099|7.28|151.0|5|1|sense L1MEc_dup14101|chr13:21452372-21453737:+|5.054990913070566|0.0325567613611099|7.28|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 561.3177490234375 2 561.319306 1120.62406 NaN NaN NaN NaN NaN NaN NaN 64.381 1 67.889 67.389 68.389 3.5083 0 0 0 0.36505 1 14469 14469 7.2892 0 1 55532 13021 34848 34866 63813 63813 0.06857103397373976 YEVEDVTWV 9 Unmodified _YEVEDVTWV_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MSMS UPN46_class_I_Rep_3 1 570.26708984375 2 570.266404 1138.51826 NaN NaN NaN NaN NaN NaN NaN 79.838 1 79.838 79.338 80.338 0 0 0 0 0.38639 1 18775 18775 3.9444 0 1 + 55533 18900 34849 34867 63814 63814 -0.04546277238773655 YEVEDVTWV 9 Unmodified _YEVEDVTWV_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MULTI-MSMS UPN47_class_I_Rep_1 2 570.2666015625 2 570.266404 1138.51826 0.37186 0.00021206 0.10877 6.203E-05 0.48064 0.00027409 570.2663831128646 74.997 0.58131 78.391 78.144 78.725 3.3937 80 51 2 0 0 0 0.46869 1 18557 18557 3.9444 0.94915 1 80815 + 55534 18900 34849 34867 63815 63815 -0.04546277238773655 YEVEDVTWV 9 Unmodified _YEVEDVTWV_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MULTI-MSMS UPN47_class_I_Rep_2 3 570.2664794921875 2 570.266404 1138.51826 0.45547 0.00025974 0.23709 0.0001352 0.69256 0.00039494 570.76792755116 75.147 0.36339 78.46 78.256 78.62 3.3127 62 34 2 0 0 0 0.36392 1 18552 18552 10.074 3.3508 1 122810 + 55535 18900 34849 34867 63816 63816 -0.04546277238773655 YEVEDVTWV 9 Unmodified _YEVEDVTWV_ 0 0 0 REV__nc|ENSG00000128573|O15409-2|FOXP2 REV__nc|ENSG00000128573|O15409-2|FOXP2 MULTI-MSMS UPN47_class_I_Rep_3 4 570.2682495117188 2 570.266404 1138.51826 0.45835 0.00026138 0.53003 0.00030226 0.98838 0.00056364 570.2666773126293 75.247 0.54418 78.493 78.194 78.738 3.2464 78 53 2 0 0 0 0.28552 2 18632 18632;18644 14.838 5.4551 1 108600 + 55536 18900 34849 34867 63817;63818 63817 -0.04546277238773655 YEVKINII 8 Unmodified _YEVKINII_ 0 0 0 L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|23|2|sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|23|2|sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|23|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 495.7414855957031 2 496.294768 990.574983 0.13526 6.7128E-05 1.2411 0.00061596 1.3764 0.00068309 496.2951295034751 34.035 0.04187 34.035 34.013 34.055 0 4 2 2 0 0 0 0.72333 1 6023 6023 2.3027 0.82083 1 104980 55537 10459 34850 34868 63819 63819 0.0793181510841805 YEVTSTKY 8 Unmodified _YEVTSTKY_ 0 0 0 ENSG00000134825|ENST00000537328|TMEM258;ENST00000541893.5_1_11:61557269-61557995:-|nuORF;ENST00000545210.5_1_11:61557269-61557995:-|nuORF ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 MULTI-MSMS UPN46_class_I_Rep_3 1 496.2945861816406 2 495.742565 989.470577 0.13401 6.6436E-05 -0.5582 -0.00027672 -0.42419 -0.00021029 495.7420856967455 33.987 0.4991 33.987 33.792 34.291 0 54 33 2 0 0 0 0.82752 1 6010 6010 19.257 7.6167 1 98908 55538 2871 34851 34869 63820 63820 -0.02457931438959804 YEWKQIDR 8 Unmodified _YEWKQIDR_ 0 0 0 REV__ENSG00000103876|ENST00000561421|FAH REV__ENSG00000103876|ENST00000561421|FAH MSMS UPN48_class_I_Rep_2 6 569.2887573242188 2 569.288005 1136.56146 NaN NaN NaN NaN NaN NaN NaN 30.574 1 34.209 33.709 34.709 3.6351 0 0 0 0.40738 1 4492 4492 0.79363 0 1 + 55539 18241 34852 34870 63821 63821 -0.001360426708288287 YEYDKECY 8 Unmodified _YEYDKECY_ 0 0 0 REV__ENST00000583380.5_2_17:57196662-57196743:-|nuORF REV__ENST00000583380.5_2_17:57196662-57196743:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 556.71533203125 2 556.71569 1111.41683 0.39934 0.00022232 -0.15242 -8.4854E-05 0.24692 0.00013746 556.7155065151271 56.25 0.56261 59.422 59.137 59.699 3.1721 58 36 2 0 0 0 0.82752 1 12953 12953 7.2892 2.0586 1 87509 + 55540 23113 34853 34871 63822 63822 -0.13442471932967237 YEYEWTYD 8 Unmodified _YEYEWTYD_ 0 0 0 REV__ENSG00000135324|ENST00000257776|MRAP2 REV__ENSG00000135324|ENST00000257776|MRAP2 MSMS UPN47_class_I_Rep_3 4 584.7286987304688 2 584.727112 1167.43967 NaN NaN NaN NaN NaN NaN NaN 116.39 1 119.85 119.35 120.35 3.462 0 0 0 0.40746 1 28639 28639 0.69038 0 1 + 55541 19133 34854 34872 63823 63823 -0.13735129543852054 YEYEWTYD 8 Unmodified _YEYEWTYD_ 0 0 0 REV__ENSG00000135324|ENST00000257776|MRAP2 REV__ENSG00000135324|ENST00000257776|MRAP2 MSMS UPN48_class_I_Rep_3 7 584.728759765625 2 584.727112 1167.43967 NaN NaN NaN NaN NaN NaN NaN 113.41 1 117.07 116.57 117.57 3.6568 0 0 0 0.40604 1 26965 26965 2.5775 0.92486 1 + 55542 19133 34854 34872 63824 63824 -0.13735129543852054 YEYFQASLW 9 Unmodified _YEYFQASLW_ 0 0 0 ENST00000327827.11_1_16:9212523-9212682:+|nuORF ENST00000327827.11_1_16:9212523-9212682:+|nuORF ENST00000327827.11_1_16:9212523-9212682:+|nuORF MSMS UPN47_class_I_Rep_2 3 603.778076171875 2 603.776939 1205.53933 NaN NaN NaN NaN NaN NaN NaN 46.529 1 49.88 49.38 50.38 3.3515 0 0 0 0.39518 1 9906 9906 1.8442 0 1 55543 6176 34855 34873 63825 63825 -0.05522267139235737 YEYKFGFEL 9 Unmodified _YEYKFGFEL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN46_class_I_Rep_3 1 598.2879638671875 2 598.28714 1194.55973 NaN NaN NaN NaN NaN NaN NaN 75.823 1 75.823 75.323 76.323 0 0 0 0 0.3377 1 17653 17653 8.7454 1.4562 1 55544 5798 34856 34874 63826 63826 -0.029770964794124666 YEYKFGFEL 9 Unmodified _YEYKFGFEL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS UPN48_class_I_Rep_1 5 598.788330078125 2 598.28714 1194.55973 0.46095 0.00027578 -0.071464 -4.2756E-05 0.38949 0.00023303 598.7889129438116 70.234 0.28091 73.694 73.449 73.73 3.4598 32 23 2 0 0 0 0.32682 2 16333 16323;16333 12.241 2.8575 1 111590 55545 5798 34856 34874 63827;63828 63828 -0.029770964794124666 YEYKFGFEL 9 Unmodified _YEYKFGFEL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS UPN48_class_I_Rep_1 5 598.287109375 2 598.28714 1194.55973 NaN NaN NaN NaN NaN NaN NaN 70.359 1 73.819 73.319 74.319 3.4598 0 0 0 0.21832 1 16391 16391 15.248 5.8654 1 55546 5798 34856 34874 63829 63829 -0.029770964794124666 YEYKFGFEL 9 Unmodified _YEYKFGFEL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS UPN48_class_I_Rep_3 7 598.2877197265625 2 598.28714 1194.55973 0.59035 0.0003532 0.73125 0.0004375 1.3216 0.00079069 598.2871117429798 70.084 0.52522 73.596 73.283 73.808 3.5128 57 41 2 0 0 0 0.279 5 16157 16137;16157;16173;16181;16205 15.248 7.6395 1 134360 55547 5798 34856 34874 63830;63831;63832;63833;63834 63831 -0.029770964794124666 YEYMLMSY 8 Unmodified _YEYMLMSY_ 0 0 0 REV__Tigger3a_dup2415|chr7:45049981-45050373:+|1.7842030895929777|0.0128546797056171|7.12|150.0|32|3|anti-sense REV__Tigger3a_dup2415|chr7:45049981-45050373:+|1.7842030895929777|0.0128546797056171|7.12|150.0|32|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 550.740234375 2 550.227379 1098.44021 0.44429 0.00024446 0.10217 5.6219E-05 0.54646 0.00030068 550.2276402428216 60.479 0.32245 63.861 63.68 64.003 3.3815 49 32 2 0 0 0 0.72333 1 14067 14067 13.508 2.684 1 111270 + 55548 32713 34857 34875 63835 63835 -0.10507749419980428 YEYPKKETH 9 Unmodified _YEYPKKETH_ 0 0 0 REV__ENSG00000018869|ENST00000586929|ZNF582 REV__ENSG00000018869|ENST00000586929|ZNF582 MSMS UPN48_class_I_Rep_1 5 597.7932739257812 2 597.793121 1193.57169 NaN NaN NaN NaN NaN NaN NaN 70.079 1 73.538 73.038 74.038 3.4598 0 0 0 0.38478 1 16305 16305 4.3292 0 1 + 55549 17601 34858 34876 63836 63836 -0.01735479736248635 YEYPYYED 8 Unmodified _YEYPYYED_ 0 0 0 nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1 nc|ENSG00000130635|P20908-2|COL5A1 nc|ENSG00000130635|P20908-2|COL5A1 MSMS UPN47_class_I_Rep_1 2 571.2220458984375 2 571.221662 1140.42877 NaN NaN NaN NaN NaN NaN NaN 116.22 1 119.81 119.31 120.31 3.5943 0 0 0 0.40746 1 28774 28774 0.69038 0 1 55550 2663 34859 34877 63837 63837 -0.1358253191813219 YEYTWHSF 8 Unmodified _YEYTWHSF_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS UPN48_class_I_Rep_2 6 566.740478515625 2 566.740357 1131.46616 NaN NaN NaN NaN NaN NaN NaN 112.99 1 116.65 116.15 117.15 3.6648 0 0 0 0.40625 1 26943 26943 2.3027 0 1 + 55551 18034 34860 34878 63838 63838 -0.09431395861861347 YFAERVTSL 9 Unmodified _YFAERVTSL_ 0 0 0 ENSG00000213145|ENST00000392531|CRIP1 ENSG00000213145|ENST00000392531|CRIP1 ENSG00000213145|ENST00000392531|CRIP1 MULTI-SECPEP UPN47_class_I_Rep_1 2 543.732666015625 2 543.284931 1084.55531 0.26702 0.00014507 -2.6793 -0.0014556 -2.4123 -0.0013105 543.285011754991 49.666 0.75348 53.325 53.04 53.794 3.6592 90 45 3 0 0 0 0.10927 1 10866 10866 16.149 6.8017 1 87007 55552 5583 34861 34879 63839 63839 0.016414390976706272 YFAERVTSL 9 Unmodified _YFAERVTSL_ 0 0 0 ENSG00000213145|ENST00000392531|CRIP1 ENSG00000213145|ENST00000392531|CRIP1 ENSG00000213145|ENST00000392531|CRIP1 MULTI-SECPEP UPN47_class_I_Rep_2 3 543.7321166992188 2 543.284931 1084.55531 0.40489 0.00021997 -2.4299 -0.0013201 -2.025 -0.0011002 543.2848213964362 50.117 1.0779 53.46 52.867 53.945 3.3431 98 59 3 0 0 0 0.10248 1 11007 11007 19.362 4.7802 1 128850 55553 5583 34861 34879 63840 63840 0.016414390976706272 YFAERVTSL 9 Unmodified _YFAERVTSL_ 0 0 0 ENSG00000213145|ENST00000392531|CRIP1 ENSG00000213145|ENST00000392531|CRIP1 ENSG00000213145|ENST00000392531|CRIP1 MULTI-SECPEP UPN47_class_I_Rep_3 4 543.7326049804688 2 543.284931 1084.55531 0.48212 0.00026193 -2.2896 -0.0012439 -1.8075 -0.00098197 543.285189377214 50.238 0.76205 53.464 53.219 53.981 3.2262 77 44 3 0 0 0 0.10927 1 11081 11081 16.149 6.8017 1 84329 55554 5583 34861 34879 63841 63841 0.016414390976706272 YFAGKAEK 8 Unmodified _YFAGKAEK_ 0 0 0 ENST00000395837.1_1_17:16284702-16284777:+|nuORF ENST00000395837.1_1_17:16284702-16284777:+|nuORF ENST00000395837.1_1_17:16284702-16284777:+|nuORF MSMS UPN48_class_I_Rep_1 5 456.771240234375 2 457.242535 912.470518 NaN NaN NaN NaN NaN NaN NaN 78.032 1 81.554 81.054 82.054 3.5221 0 0 0 0.40738 1 18599 18599 0.79363 0 1 55555 6556 34862 34880 63842 63842 0.010781133516957198 YFAIKRQT 8 Unmodified _YFAIKRQT_ 0 0 0 REV__L1ME1_dup12606|chr6:156140923-156142042:-|7.698299315656277|0.0387518630656817|7.63|151.0|4|1|sense REV__L1ME1_dup12606|chr6:156140923-156142042:-|7.698299315656277|0.0387518630656817|7.63|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 513.7899780273438 2 513.790184 1025.56581 NaN NaN NaN NaN NaN NaN NaN 28.042 1 31.599 31.099 32.099 3.5571 0 0 0 0.40581 1 3698 3698 2.8892 0 1 + 55556 27590 34863 34881 63843 63843 0.05405466542742943 YFAKRHLI 8 Unmodified _YFAKRHLI_ 0 0 0 nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS nc|ENSG00000111726|Q8NFW8-2|CMAS nc|ENSG00000111726|Q8NFW8-2|CMAS MSMS UPN48_class_I_Rep_2 6 524.3096313476562 2 524.308544 1046.60253 NaN NaN NaN NaN NaN NaN NaN 61.316 1 64.795 64.295 65.295 3.4785 0 0 0 0.40625 1 13611 13611 2.3027 0 1 55557 1985 34864 34882 63844 63844 0.0810976315933658 YFALPVYV 8 Unmodified _YFALPVYV_ 0 0 0 ENSG00000171105.14,INSR,chr19,-,I7.1,7166405,7167967|37|5.02|1|intron ENSG00000171105.14,INSR,chr19,-,I7.1,7166405,7167967|37|5.02|1|intron ENSG00000171105.14,INSR,chr19,-,I7.1,7166405,7167967|37|5.02|1|intron MULTI-SECPEP UPN47_class_I_Rep_3 4 485.7722473144531 2 486.265479 970.516405 -0.62053 -0.00030174 0.30852 0.00015002 -0.31201 -0.00015172 486.26664100621156 20.639 0.071159 23.989 23.946 24.017 3.3496 5 4 2 0 0 0 0.72333 1 2166 2166 0.79363 0 1 17859 55558 4507 34865 34883 63845 63845 0.02996758533947741 YFAPSFLSVT 10 Unmodified _YFAPSFLSVT_ 0 0 0 REV__nc|ENSG00000056558|Q13077-2|TRAF1 REV__nc|ENSG00000056558|Q13077-2|TRAF1 MSMS UPN46_class_I_Rep_3 1 566.2798461914062 2 566.289682 1130.56481 NaN NaN NaN NaN NaN NaN NaN 23.32 1 23.32 22.82 23.82 0 0 0 0 0.53105 1 2905 2905 1.4819 0.28856 1 + 55559 17704 34866 34884 63846 63846 0.00475207383169618 YFAWLRRW 8 Unmodified _YFAWLRRW_ 0 0 0 REV__ENST00000465312.5_1_1:155227300-155231996:-|nuORF REV__ENST00000465312.5_1_1:155227300-155231996:-|nuORF MSMS UPN47_class_I_Rep_2 3 599.3181762695312 2 599.319443 1196.62433 NaN NaN NaN NaN NaN NaN NaN 45.072 1 48.428 47.928 48.928 3.3556 0 0 0 0.40738 1 9462 9462 0.79363 0 1 + 55560 22465 34867 34885 63847 63847 0.03388567907882134 YFCELWGL 8 Unmodified _YFCELWGL_ 0 0 0 L1MEc_dup4077|chr3:136182740-136183258:+|1.423277494110666|0.0075146546056928|7.57|151.0|25|1|anti-sense L1MEc_dup4077|chr3:136182740-136183258:+|1.423277494110666|0.0075146546056928|7.57|151.0|25|1|anti-sense L1MEc_dup4077|chr3:136182740-136183258:+|1.423277494110666|0.0075146546056928|7.57|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 515.7380981445312 2 515.738771 1029.46299 NaN NaN NaN NaN NaN NaN NaN 116.86 1 116.86 116.36 117.36 0 0 0 0 0.40738 1 28943 28943 0.79363 0 1 55561 13100 34868 34886 63848 63848 -0.050563622402250985 YFCFYLFCS 9 Unmodified _YFCFYLFCS_ 0 0 0 REV__L1ME4b_dup11250|chr9:85649160-85649289:+|1.474534717375477|0.1127833638225774|3.71|151.0|10|2|anti-sense REV__L1ME4b_dup11250|chr9:85649160-85649289:+|1.474534717375477|0.1127833638225774|3.71|151.0|10|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 596.7459716796875 2 596.745739 1191.47692 0.39154 0.00023365 0.20694 0.00012349 0.59848 0.00035714 596.7457844874281 73.606 0.80602 76.992 76.52 77.326 3.3861 222 72 4 0 0 0 0.48643 1 18123 18123 2.0598 0 1 585650 + 55562 28244 34869 34887 63849 63849 -0.1111545280343762 YFCHRLHF 8 Unmodified _YFCHRLHF_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|106|2|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|106|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 561.2906494140625 2 561.768729 1121.5229 0.40294 0.00022636 1.4418 0.00080997 1.8448 0.0010363 561.7695120955354 46.164 0.20822 49.922 49.764 49.972 3.7579 22 13 2 0 0 0 0.72333 1 8981 8981 5.2307 0 1 86821 + 55563 28443 34870 34888 63850 63850 -0.032996267863381945 YFCHRLHF 8 Unmodified _YFCHRLHF_ 0 0 0 REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|106|2|anti-sense REV__L1MEc_dup3700|chr3:57604953-57606780:+|1.5340712102219598|0.0739771535431865|4.37|151.0|106|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 561.768729 1121.5229 0.44274 0.00024872 1.2445 0.00069915 1.6873 0.00094787 561.7693108670142 46.502 0.034622 50.021 50.004 50.039 3.5192 0.049812 -0.00020075 NaN 5.2307 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 82177 + 55564 28443 34870 34888 -0.032996267863381945 YFCLDWTF 8 Unmodified _YFCLDWTF_ 0 0 0 REV__L1PA5_dup2267|chr3:149949042-149949747:-|1.089489952425346|0.0778975344608931|3.81|151.0|25|1|anti-sense REV__L1PA5_dup2267|chr3:149949042-149949747:-|1.089489952425346|0.0778975344608931|3.81|151.0|25|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.7362060546875 2 547.736228 1093.4579 -0.060645 -3.3217E-05 -0.2065 -0.00011311 -0.26715 -0.00014633 547.7362343596284 20.016 0.77829 23.628 23.322 24.1 3.6118 170 84 3 0 0 0 0.82752 1 1945 1945 5.2307 0 1 72443 + 55565 29734 34871 34889 63851 63851 -0.08508666102852658 YFCRFRHF 8 Unmodified _YFCRFRHF_ 0 0 0 L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|191|1|anti-sense L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|191|1|anti-sense L1PA11_dup1721|chr6:170349709-170354642:+|4.3168850707573165|0.2250658259190491|4.26|151.0|191|1|anti-sense MSMS UPN47_class_I_Rep_2 3 588.2805786132812 2 588.282003 1174.54945 NaN NaN NaN NaN NaN NaN NaN 27.541 1 31.04 30.54 31.54 3.4986 0 0 0 0.40746 1 4150 4150 0.69038 0 1 55566 13652 34872 34890 63852 63852 -0.03083937894984956 YFCSALYYF 9 Unmodified _YFCSALYYF_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense MSMS UPN48_class_I_Rep_1 5 588.7547607421875 2 588.757161 1175.49977 NaN NaN NaN NaN NaN NaN NaN 64.042 1 67.5 67 68 3.4578 0 0 0 0.34056 1 14466 14466 8.5933 1.304 1 55567 8521 34873 34891 63853 63853 -0.08096110414339819 YFCSALYYF 9 Unmodified _YFCSALYYF_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 588.8043823242188 2 588.757161 1175.49977 0.53558 0.00031533 -3.3108 -0.0019492 -2.7752 -0.0016339 588.7551620373749 63.721 0.064854 67.179 67.131 67.196 3.4578 6 4 2 0 0 0 0.12235 1 14358 14358 4.756 1.1595 1 89750 55568 8521 34873 34891 63854 63854 -0.08096110414339819 YFCSALYYF 9 Unmodified _YFCSALYYF_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense MSMS UPN48_class_I_Rep_2 6 588.7566528320312 2 588.757161 1175.49977 NaN NaN NaN NaN NaN NaN NaN 64.293 1 67.767 67.267 68.267 3.4743 0 0 0 0.28335 1 14523 14523 11.64 0 1 55569 8521 34873 34891 63855 63855 -0.08096110414339819 YFCSALYYF 9 Unmodified _YFCSALYYF_ 0 0 0 L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense L1M1_dup2520|chr4:128987155-128991727:+|3.863364353095571|0.0983169395606357|5.3|150.0|284|3|anti-sense MSMS UPN48_class_I_Rep_3 7 588.7557983398438 2 588.757161 1175.49977 NaN NaN NaN NaN NaN NaN NaN 64.005 1 67.513 67.013 68.013 3.5083 0 0 0 0.1724 1 14355 14355 18.135 3.5533 1 55570 8521 34873 34891 63856 63856 -0.08096110414339819 YFCSDGCG 8 Unmodified _YFCSDGCG_ 0 0 0 REV__GIGYF1|p.R128C|1|0.1|ENSG00000146830|chr7:100687398-100687398|G/A|missense_variant REV__GIGYF1|p.R128C|1|0.1|ENSG00000146830|chr7:100687398-100687398|G/A|missense_variant MSMS UPN46_class_I_Rep_3 1 426.1370544433594 2 426.138564 850.262575 NaN NaN NaN NaN NaN NaN NaN 59.174 1 59.174 58.674 59.674 0 0 0 0 0.40738 1 13065 13065 0.79363 0.10326 1 + 55571 23327 34874 34892 63857 63857 -0.16854579899325017 YFCSNLHYF 9 Unmodified _YFCSNLHYF_ 0 0 0 L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|94|2|anti-sense;L1MB1_dup785|chr2:206776235-206778671:-|1.1735980599641669|0.0758708852873643|3.95|149.0|96|1|anti-sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|94|2|anti-sense L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|94|2|anti-sense MSMS UPN47_class_I_Rep_1 2 597.2610473632812 2 597.257859 1192.50117 NaN NaN NaN NaN NaN NaN NaN 66.668 1 70.025 69.525 70.525 3.3576 0 0 0 0.34878 1 15984 15984 8.1555 0.8663 1 55572 10199 34875 34893 63858 63858 -0.0873847632556135 YFCTFGMMRL 10 Unmodified _YFCTFGMMRL_ 0 0 0 REV__ENSG00000013523|ENST00000251089|ANGEL1 REV__ENSG00000013523|ENST00000251089|ANGEL1 MSMS UPN48_class_I_Rep_2 6 634.3153686523438 2 634.784872 1267.55519 NaN NaN NaN NaN NaN NaN NaN 49.236 1 52.953 52.453 53.453 3.7175 0 0 0 0.53105 1 9926 9926 1.6526 0 1 + 55573 17590 34876 34894 63859 63859 -0.06788343489847648 YFCVHMNF 8 Unmodified _YFCVHMNF_ 0 0 0 L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|333|3|anti-sense L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|333|3|anti-sense L1PA6_dup1194|chr3:121902361-121908514:-|5.124567264980408|0.0433100883901871|6.89|150.0|333|3|anti-sense MSMS UPN47_class_I_Rep_2 3 530.7344970703125 2 530.722598 1059.43064 NaN NaN NaN NaN NaN NaN NaN 31.777 1 35.246 34.746 35.746 3.4691 0 0 0 0.40604 1 5421 5421 2.5775 0.27475 1 55574 14555 34877 34895 63860 63860 -0.0966947291485667 YFDEEDEEH 9 Unmodified _YFDEEDEEH_ 0 0 0 REV__ENSG00000138303|ENST00000672957|ASCC1 REV__ENSG00000138303|ENST00000672957|ASCC1 MSMS UPN46_class_I_Rep_3 1 606.7199096679688 2 606.720015 1211.42548 NaN NaN NaN NaN NaN NaN NaN 72.115 1 72.115 71.615 72.615 0 0 0 0 0.4029 1 16651 16651 0 0 1 + 55575 19270 34878 34896 63861 63861 -0.17177826762804216 YFDEFFPY 8 Unmodified _YFDEFFPY_ 0 0 0 REV__L1MA3_dup6446|chr11:66202783-66204075:+|2.743212250249203|0.0330110151399229|6.38|151.0|56|1|anti-sense REV__L1MA3_dup6446|chr11:66202783-66204075:+|2.743212250249203|0.0330110151399229|6.38|151.0|56|1|anti-sense MSMS UPN47_class_I_Rep_1 2 564.2750244140625 2 564.239658 1126.46476 NaN NaN NaN NaN NaN NaN NaN 113.93 1 117.5 117 118 3.572 0 0 0 0.40604 1 28135 28135 2.5775 0.51773 1 + 55576 25073 34879 34897 63862 63862 -0.09341029950610391 YFDGTQNSSPS 11 Unmodified _YFDGTQNSSPS_ 0 0 0 REV__ENST00000593829.5_1_19:18417816-18417990:-|nuORF REV__ENST00000593829.5_1_19:18417816-18417990:-|nuORF MSMS UPN47_class_I_Rep_3 4 601.75244140625 2 601.75165 1201.48875 NaN NaN NaN NaN NaN NaN NaN 116.03 1 119.49 118.99 119.99 3.462 0 0 0 0.38417 1 28544 28544 1.1933 0.50296 1 + 55577 23187 34880 34898 63863 63863 -0.10393841254904146 YFDIYFEK 8 Unmodified _YFDIYFEK_ 0 0 0 ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|1|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|10|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|5|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|6|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|11|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|2|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|9|intron;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|8|intron;nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|4|intron;ENSG00000185238|ENST00000331079|PRMT3;ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|7|intron ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|1|intron ENSG00000185238.13,PRMT3,chr11,+,I15.1,20494255,20508303|78|10.01|1|intron MSMS UPN48_class_I_Rep_2 6 562.767333984375 2 562.768583 1123.52261 NaN NaN NaN NaN NaN NaN NaN 89.765 1 93.513 93.013 94.013 3.7471 0 0 0 0.40404 1 21396 21396 5.2307 0 1 55578 5092 34881 34899 63864 63864 -0.034207680251938655 YFDSDMSIY 9 Unmodified _YFDSDMSIY_ 0 0 0 REV__L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|69|1|anti-sense REV__L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|69|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 570.7303466796875 2 570.73134 1139.44813 0.37236 0.00021252 -0.030457 -1.7383E-05 0.3419 0.00019513 570.7311532366062 66.123 1.8787 69.382 68.257 70.136 3.2588 203 126 2 0 0 0 0.41259 1 15799 15799 7.2892 0 1 141030 + 55579 26727 34882 34900 63865 63865 -0.11601898898857144 YFDSDMSIY 9 Unmodified _YFDSDMSIY_ 0 0 0 REV__L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|69|1|anti-sense REV__L1MC3_dup2025|chr3:4321012-4322473:+|1.3365872550056446|0.2871600458492466|2.22|151.0|69|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.7315673828125 2 570.73134 1139.44813 0.43665 0.00024921 -0.26953 -0.00015383 0.16712 9.5379E-05 570.7310989022354 66.287 1.5012 69.472 68.608 70.109 3.1853 167 105 2 0 0 0 0.26948 1 16033 16033 15.847 0 1 145790 + 55580 26727 34882 34900 63866 63866 -0.11601898898857144 YFDYFGSEG 9 Unmodified _YFDYFGSEG_ 0 0 0 REV__L1PA8_dup4863|chrX:75311439-75313281:-|1.132545696123629|0.068180336544676|4.05|151.0|79|2|anti-sense REV__L1PA8_dup4863|chrX:75311439-75313281:-|1.132545696123629|0.068180336544676|4.05|151.0|79|2|anti-sense MSMS UPN46_class_I_Rep_3 1 542.7176513671875 2 542.716547 1083.41854 NaN NaN NaN NaN NaN NaN NaN 24.844 1 24.844 24.344 25.344 0 0 0 0 0.38639 1 3320 3320 3.9444 1.2092 1 + 55581 30236 34883 34901 63867 63867 -0.11983094852689646 YFEFPFWH 8 Unmodified _YFEFPFWH_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_2 6 586.76318359375 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 18.266 1 21.917 21.417 22.417 3.6509 0 0 0 0.40604 1 1197 1197 2.5775 0.51773 1 55582 9841 34884 34902 63868 63868 -0.06617911239914065 YFEFPFWH 8 Unmodified _YFEFPFWH_ 0 0 0 L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense L1MA4A_dup5732|chr18:37091157-37093955:+|1.1438384986164265|0.0274095738496809|5.38|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_3 7 587.1057739257812 2 586.763635 1171.51272 NaN NaN NaN NaN NaN NaN NaN 26.612 1 30.378 29.878 30.878 3.7663 0 0 0 0.40746 1 3393 3393 0.69038 0 1 55583 9841 34884 34902 63869 63869 -0.06617911239914065 YFEKTRYL 8 Unmodified _YFEKTRYL_ 0 0 0 REV__ENST00000358780.9_2_11:95513079-95516427:-|nuORF REV__ENST00000358780.9_2_11:95513079-95516427:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 560.2954711914062 2 560.295299 1118.57605 0.37976 0.00021278 0.21074 0.00011808 0.5905 0.00033086 560.7969329403973 66.892 0.96336 70.156 69.861 70.825 3.2636 174 72 3 0 0 0 0.82752 1 16130 16130 24.674 2.9272 1 271980 + 55584 17879 34885 34903 63870 63870 0.02150029477343196 YFFETKCRD 9 Unmodified _YFFETKCRD_ 0 0 0 ENSG00000134259|ENST00000369512|NGF ENSG00000134259|ENST00000369512|NGF ENSG00000134259|ENST00000369512|NGF MSMS UPN48_class_I_Rep_1 5 604.7755126953125 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 29.977 1 33.519 33.019 34.019 3.542 0 0 0 0.39598 1 4241 4241 1.6526 0.17072 1 55585 2842 34886 34904 63871 63871 -0.062271086424289024 YFFFCLYCS 9 Unmodified _YFFFCLYCS_ 0 0 0 L1MB4_dup7577|chr17:4325565-4326881:+|1.8266102009264695|0.0177047106585273|6.69|151.0|68|2|anti-sense L1MB4_dup7577|chr17:4325565-4326881:+|1.8266102009264695|0.0177047106585273|6.69|151.0|68|2|anti-sense L1MB4_dup7577|chr17:4325565-4326881:+|1.8266102009264695|0.0177047106585273|6.69|151.0|68|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 596.7460327148438 2 596.745739 1191.47692 0.39154 0.00023365 0.20694 0.00012349 0.59848 0.00035714 596.7457844874281 73.606 0.80602 76.992 76.52 77.326 3.3861 222 72 4 0 0 0 0.48414 1 18090 18090 2.3027 0 1 585650 55586 10581 34887 34905 63872 63872 -0.1111545280343762 YFFFFHCDF 9 Unmodified _YFFFFHCDF_ 0 0 0 L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|41|1|anti-sense L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|41|1|anti-sense L1MB7_dup4559|chr3:123233473-123234740:+|3.1841755896284205|0.1143969974671005|4.8|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_2 6 636.7630004882812 2 636.762778 1271.511 NaN NaN NaN NaN NaN NaN NaN 113.17 1 116.83 116.33 117.33 3.6648 0 0 0 0.40038 1 26995 26995 0.6015 0 1 55587 10838 34888 34906 63873 63873 -0.11389288320174273 YFFFFSLAW 9 Unmodified _YFFFFSLAW_ 0 0 0 REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|228|3|anti-sense REV__L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|228|3|anti-sense MSMS UPN48_class_I_Rep_2 6 614.296875 2 614.29731 1226.58007 NaN NaN NaN NaN NaN NaN NaN 73.839 1 77.417 76.917 77.917 3.5779 0 0 0 0.39428 1 17353 17353 2.0598 0.21551 1 + 55588 29121 34889 34907 63874 63874 -0.024158810289463872 YFFFLKNY 8 Unmodified _YFFFLKNY_ 0 0 0 L1M5_dup19352|chr6:25979248-25980332:-|2.413105801504385|0.3006250550402649|3.0|151.0|83|3|anti-sense L1M5_dup19352|chr6:25979248-25980332:-|2.413105801504385|0.3006250550402649|3.0|151.0|83|3|anti-sense L1M5_dup19352|chr6:25979248-25980332:-|2.413105801504385|0.3006250550402649|3.0|151.0|83|3|anti-sense MSMS UPN47_class_I_Rep_1 2 571.3023681640625 2 571.289485 1140.56442 NaN NaN NaN NaN NaN NaN NaN 44.357 1 48.052 47.552 48.552 3.6951 0 0 0 0.40604 1 9214 9214 2.5775 0.27475 1 55589 9105 34890 34908 63875 63875 -0.00024167546007447527 YFFFLLSKY 9 Unmodified _YFFFLLSKY_ 0 0 0 L1M5_dup19973|chr6:57067713-57068260:-|1.0287353358155475|0.0431631380829324|4.57|151.0|37|2|anti-sense L1M5_dup19973|chr6:57067713-57068260:-|1.0287353358155475|0.0431631380829324|4.57|151.0|37|2|anti-sense L1M5_dup19973|chr6:57067713-57068260:-|1.0287353358155475|0.0431631380829324|4.57|151.0|37|2|anti-sense MSMS UPN47_class_I_Rep_2 3 614.3256225585938 2 614.326068 1226.63758 NaN NaN NaN NaN NaN NaN NaN 39.026 1 42.405 41.905 42.905 3.3785 0 0 0 0.40038 1 7620 7620 0.6015 0 1 55590 9110 34891 34909 63876 63876 0.03332961176602112 YFFFLVPF 8 Unmodified _YFFFLVPF_ 0 0 0 REV__L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|94|3|anti-sense REV__L1MC4a_dup5242|chr9:32980875-32982408:+|1.3234133058063366|0.3563654690519663|1.89|151.0|94|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.2847900390625 2 540.283672 1078.55279 NaN NaN NaN NaN NaN NaN NaN 87.502 1 87.502 87.002 88.002 0 0 0 0 0.40738 1 20968 20968 0.79363 0 1 + 55591 27003 34892 34910 63877 63877 0.016656354306633148 YFFFNCLF 8 Unmodified _YFFFNCLF_ 0 0 0 L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|129|2|anti-sense L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|129|2|anti-sense L1M4a1_dup505|chr3:31588607-31590686:-|1.99581749228798|0.0253124321903167|6.3|151.0|129|2|anti-sense MSMS UPN46_class_I_Rep_3 1 550.259033203125 2 550.749139 1099.48372 NaN NaN NaN NaN NaN NaN NaN 68.849 1 68.849 68.349 69.349 0 0 0 0 0.40738 1 15743 15743 0.79363 0 1 55592 8959 34893 34911 63878 63878 -0.062037718605779446 YFFFVVFCR 9 Unmodified _YFFFVVFCR_ 0 0 0 AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|18|3|anti-sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|18|3|anti-sense AluJb_dup101930|chr16:29589483-29589774:+|1.1910137250399198|0.0084078039314887|7.15|151.0|18|3|anti-sense MSMS UPN47_class_I_Rep_2 3 614.30517578125 2 614.304613 1226.59467 NaN NaN NaN NaN NaN NaN NaN 35.224 1 38.649 38.149 39.149 3.4253 0 0 0 0.40038 1 6467 6467 0.6015 0 1 55593 5 34894 34912 63879 63879 -0.009561321524643063 YFFGALFSY 9 Unmodified _YFFGALFSY_ 0 0 0 REV__L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense REV__L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7635498046875 2 557.765843 1113.51713 NaN NaN NaN NaN NaN NaN NaN 28.936 1 32.694 32.194 33.194 3.7578 0 0 0 0.35339 1 4525 4525 7.9102 0.62092 1 + 55594 27747 34895 34913 63880 63880 -0.03508446816999822 YFFHFFFF 8 Unmodified _YFFHFFFF_ 0 0 0 Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|57|3|anti-sense Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|57|3|anti-sense Tigger2_dup2694|chr20:47558546-47559601:-|1.918304243934471|0.0080832203902119|7.89|151.0|57|3|anti-sense MSMS UPN47_class_I_Rep_3 4 601.2774047851562 2 601.278921 1200.54329 NaN NaN NaN NaN NaN NaN NaN 39.405 1 42.643 42.143 43.143 3.238 0 0 0 0.40581 1 7781 7781 2.8892 0.58649 1 55595 33315 34896 34914 63881 63881 -0.04896132854878488 YFFHHFYF 8 Unmodified _YFFHHFYF_ 0 0 0 REV__L1MC4_dup16727|chr11:72955879-72956432:+|2.222604020997091|0.0111807186923968|7.64|151.0|29|3|anti-sense REV__L1MC4_dup16727|chr11:72955879-72956432:+|2.222604020997091|0.0111807186923968|7.64|151.0|29|3|anti-sense MSMS UPN47_class_I_Rep_1 2 604.271484375 2 604.271627 1206.5287 NaN NaN NaN NaN NaN NaN NaN 42.375 1 46.054 45.554 46.554 3.6792 0 0 0 0.40738 1 8607 8607 0.79363 0 1 + 55596 26837 34897 34915 63882 63882 -0.06630205003011724 YFFHYIID 8 Unmodified _YFFHYIID_ 0 0 0 L1MEc_dup270|chr1:43845284-43846466:-|1.044685241142396|0.035906076589472|4.86|151.0|59|1|anti-sense L1MEc_dup270|chr1:43845284-43846466:-|1.044685241142396|0.035906076589472|4.86|151.0|59|1|anti-sense L1MEc_dup270|chr1:43845284-43846466:-|1.044685241142396|0.035906076589472|4.86|151.0|59|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.2705078125 2 559.271293 1116.52803 0.48735 0.00027256 -0.65091 -0.00036404 -0.16356 -9.1473E-05 559.2707872800711 71.343 0.30364 74.894 74.791 75.095 3.5505 38 29 2 0 0 0 0.82752 1 16660 16660 0.79363 0 1 112400 55597 13088 34898 34916 63883 63883 -0.025570444427330585 YFFIFYHSDWC 11 Unmodified _YFFIFYHSDWC_ 0 0 0 L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense MSMS UPN48_class_I_Rep_1 5 509.8851623535156 3 509.884913 1526.63291 NaN NaN NaN NaN NaN NaN NaN 94.255 1 97.876 97.376 98.376 3.6208 0 0 0 0.38417 1 22678 22678 0.094841 0 1 55598 13962 34899 34917 63884 63884 -0.10934291028456755 YFFIFYHSDWC 11 Unmodified _YFFIFYHSDWC_ 0 0 0 L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense MSMS UPN48_class_I_Rep_2 6 509.88555908203125 3 509.884913 1526.63291 NaN NaN NaN NaN NaN NaN NaN 93.989 1 97.765 97.265 98.265 3.7761 0 0 0 0.38417 1 22351 22351 0.094841 0 1 55599 13962 34899 34917 63885 63885 -0.10934291028456755 YFFIFYHSDWC 11 Unmodified _YFFIFYHSDWC_ 0 0 0 L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense L1PA15_dup6276|chr11:102416216-102419177:+|4.574589046498925|0.1675036115542428|4.77|151.0|142|2|anti-sense MSMS UPN48_class_I_Rep_3 7 509.8854064941406 3 509.884913 1526.63291 NaN NaN NaN NaN NaN NaN NaN 93.711 1 97.603 97.103 98.103 3.8914 0 0 0 0.38417 1 22213 22213 0.094841 0 1 55600 13962 34899 34917 63886 63886 -0.10934291028456755 YFFKIALAL 9 Unmodified _YFFKIALAL_ 0 0 0 L1ME3A_dup12748|chr15:64638049-64638484:-|1.035818197785191|0.0062287452383822|7.38|151.0|25|2|anti-sense L1ME3A_dup12748|chr15:64638049-64638484:-|1.035818197785191|0.0062287452383822|7.38|151.0|25|2|anti-sense L1ME3A_dup12748|chr15:64638049-64638484:-|1.035818197785191|0.0062287452383822|7.38|151.0|25|2|anti-sense MSMS UPN48_class_I_Rep_2 6 543.3232421875 2 543.323328 1084.6321 NaN NaN NaN NaN NaN NaN NaN 22.238 1 25.883 25.383 26.383 3.6459 0 0 0 0.4029 1 2238 2238 0 0 1 55601 12633 34900 34918 63887 63887 0.09317282384768077 YFFLPRSR 8 Unmodified _YFFLPRSR_ 0 0 0 HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|189|3|anti-sense HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|189|3|anti-sense HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|189|3|anti-sense MSMS UPN48_class_I_Rep_1 5 543.298828125 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 28.619 1 32.176 31.676 32.676 3.5571 0 0 0 0.40738 1 3856 3856 0.79363 0 1 55602 8413 34901 34919 63888 63888 0.042891727796586565 YFFLYQTF 8 Unmodified _YFFLYQTF_ 0 0 0 REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|21|1|anti-sense REV__L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.7896118164062 2 564.773668 1127.53278 NaN NaN NaN NaN NaN NaN NaN 69.481 1 72.994 72.494 73.494 3.5128 0 0 0 0.40364 1 16009 16009 5.7604 0.46354 1 + 55603 25748 34902 34920 63889 63889 -0.025881602999561437 YFFMCHICL 9 Unmodified _YFFMCHICL_ 0 0 0 REV__L1MA3_dup8539|chr20:1352629-1353183:-|1.0026833032971705|0.0929937538126576|3.43|151.0|25|1|anti-sense REV__L1MA3_dup8539|chr20:1352629-1353183:-|1.0026833032971705|0.0929937538126576|3.43|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_3 7 588.7555541992188 2 588.755584 1175.49661 NaN NaN NaN NaN NaN NaN NaN 64.224 1 67.732 67.232 68.232 3.5083 0 0 0 0.381 1 14422 14422 5.2307 0.90143 1 + 55604 25129 34903 34921 63890 63890 -0.08411400064301233 YFFNYALI 8 Unmodified _YFFNYALI_ 0 0 0 REV__L1ME1_dup13738|chr7:92816377-92819538:+|5.307144712128272|0.039125723873134|7.08|151.0|202|2|anti-sense REV__L1ME1_dup13738|chr7:92816377-92819538:+|5.307144712128272|0.039125723873134|7.08|151.0|202|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 526.1390380859375 2 525.768386 1049.52222 0.40561 0.00021326 -0.55969 -0.00029427 -0.15408 -8.1011E-05 526.2697295788095 51.59 0.31303 55.258 55.012 55.326 3.6679 38 28 2 0 0 0 0.72333 1 10658 10658 12.532 0.89125 1 215460 + 55605 27602 34904 34922 63891 63891 -0.0005614295439499983 YFFNYALI 8 Unmodified _YFFNYALI_ 0 0 0 REV__L1ME1_dup13738|chr7:92816377-92819538:+|5.307144712128272|0.039125723873134|7.08|151.0|202|2|anti-sense REV__L1ME1_dup13738|chr7:92816377-92819538:+|5.307144712128272|0.039125723873134|7.08|151.0|202|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 525.768386 1049.52222 0.3229 0.00016977 -0.66267 -0.00034841 -0.33977 -0.00017864 525.7679534706833 51.552 0.20314 55.163 55.027 55.231 3.6105 -0.047434 -7.559E-05 NaN 12.532 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 116250 + 55606 27602 34904 34922 -0.0005614295439499983 YFFNYKFA 8 Unmodified _YFFNYKFA_ 0 0 0 REV__L1ME1_dup15086|chr8:60588299-60588810:+|1.5185932556523631|0.0599058387959766|4.66|151.0|4|1|sense REV__L1ME1_dup15086|chr8:60588299-60588810:+|1.5185932556523631|0.0599058387959766|4.66|151.0|4|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 550.8153076171875 2 550.26601 1098.51747 -0.11389 -6.2671E-05 0.48543 0.00026712 0.37154 0.00020445 550.2677676218944 35.219 0.0411 38.483 38.463 38.504 3.2639 5 3 2 0 0 0 0.72333 1 6503 6503 2.5775 0 1 25456 + 55607 27610 34905 34923 63892 63892 -0.027850270971384816 YFFPHFNR 8 Unmodified _YFFPHFNR_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN47_class_I_Rep_1 2 564.2734985351562 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 24.531 1 28.261 27.761 28.761 3.7298 0 0 0 0.40738 1 3222 3222 0.79363 0 1 + 55608 25379 34906 34924 63893 63893 -0.023356867714937835 YFFPHFNR 8 Unmodified _YFFPHFNR_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2750244140625 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 113.99 1 117.5 117 118 3.5109 0 0 0 0.40738 1 27742 27742 0.79363 0 1 + 55609 25379 34906 34924 63894 63894 -0.023356867714937835 YFFPHFNR 8 Unmodified _YFFPHFNR_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.741455078125 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 118.67 1 122.09 121.59 122.59 3.4238 0 0 0 0.40738 1 29275 29275 0.79363 0 1 + 55610 25379 34906 34924 63895 63895 -0.023356867714937835 YFFPHFNR 8 Unmodified _YFFPHFNR_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2740478515625 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 18.316 1 21.847 21.347 22.347 3.5313 0 0 0 0.40738 1 1213 1213 0.79363 0 1 + 55611 25379 34906 34924 63896 63896 -0.023356867714937835 YFFPHFNR 8 Unmodified _YFFPHFNR_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2740478515625 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 113.63 1 117.26 116.76 117.76 3.6314 0 0 0 0.40738 1 27610 27610 0.79363 0 1 + 55612 25379 34906 34924 63897 63897 -0.023356867714937835 YFFPHFNR 8 Unmodified _YFFPHFNR_ 0 0 0 REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense REV__L1MA5_dup3099|chr10:133447544-133450304:+|1.310101834430361|0.2853507943097055|2.2|151.0|148|2|anti-sense MSMS UPN48_class_I_Rep_2 6 564.294921875 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 26.503 1 30.136 29.636 30.636 3.6332 0 0 0 0.40604 1 3383 3383 2.5775 0 1 + 55613 25379 34906 34924 63898 63898 -0.023356867714937835 YFFPLCILN 9 Unmodified _YFFPLCILN_ 0 0 0 HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|86|2|anti-sense HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|86|2|anti-sense HAL1M8_dup1379|chr11:6525481-6527182:-|1.0084737206068737|0.2553872680961581|1.98|151.0|86|2|anti-sense MSMS UPN48_class_I_Rep_3 7 565.2894897460938 2 565.291171 1128.56779 NaN NaN NaN NaN NaN NaN NaN 40.063 1 43.714 43.214 44.214 3.6509 0 0 0 0.39326 1 7079 7079 2.3027 0 1 55614 7933 34907 34925 63899 63899 0.008647592363558942 YFFPQAIVY 9 Unmodified _YFFPQAIVY_ 0 0 0 HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|62|3|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|62|3|anti-sense HAL1_dup5627|chr3:196792718-196793853:+|1.297017167083402|0.0319162044527968|5.34|151.0|62|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 573.7950439453125 2 574.294768 1146.57498 0.43022 0.00024708 2.0023 0.0011499 2.4325 0.001397 574.296162777686 63.955 0.082325 67.13 67.083 67.166 3.1741 7 5 2 0 0 0 0.12422 1 15265 15265 2.3027 0.4585 1 41927 55615 7898 34908 34926 63900 63900 0.007558151084140263 YFFRDWFEYPI 11 Unmodified _YFFRDWFEYPI_ 0 0 0 REV__L1M4_dup1944|chr2:86493279-86494627:-|1.0648980385685625|0.2721828116942406|1.97|151.0|87|3|anti-sense REV__L1M4_dup1944|chr2:86493279-86494627:-|1.0648980385685625|0.2721828116942406|1.97|151.0|87|3|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 527.9232788085938 3 528.25036 1581.72925 -0.092437 -4.883E-05 0.18883 9.9751E-05 0.096396 5.0921E-05 528.2504336092421 22.43 0.57416 22.43 22.267 22.841 0 111 59 4 0 0 0 22.551 1 2661 2661 0.094841 0.094841 1 139360 + 55616 24412 34909 34927 63901 63901 -0.038344001968653174 YFFRKRHRYLW 11 Unmodified _YFFRKRHRYLW_ 0 0 0 ENST00000438724.5_1_13:79951611-79952941:-|nuORF ENST00000438724.5_1_13:79951611-79952941:-|nuORF ENST00000438724.5_1_13:79951611-79952941:-|nuORF MSMS UPN46_class_I_Rep_3 1 557.9728393554688 3 557.972155 1670.89463 NaN NaN NaN NaN NaN NaN NaN 57.832 1 57.832 57.332 58.332 0 0 0 0 0.38417 1 12696 12696 0 0 1 55617 6765 34910 34928 63902 63902 0.08602296173307877 YFFSVLWVF 9 Unmodified _YFFSVLWVF_ 0 0 0 L1MD2_dup1075|chr2:111228613-111231526:+|1.9627453657422895|0.1226304851126796|4.0|149.0|159|2|anti-sense L1MD2_dup1075|chr2:111228613-111231526:+|1.9627453657422895|0.1226304851126796|4.0|149.0|159|2|anti-sense L1MD2_dup1075|chr2:111228613-111231526:+|1.9627453657422895|0.1226304851126796|4.0|149.0|159|2|anti-sense MSMS UPN48_class_I_Rep_1 5 604.311279296875 2 604.312961 1206.61137 NaN NaN NaN NaN NaN NaN NaN 69.42 1 72.875 72.375 73.375 3.4548 0 0 0 0.26661 1 16104 16104 12.532 0 1 55618 11982 34911 34929 63903 63903 0.016326920051142224 YFFTWFLF 8 Unmodified _YFFTWFLF_ 0 0 0 HAL1_dup18727|chr14:102646199-102646605:+|1.2349841892213815|0.0041276961582324|8.22|151.0|23|2|anti-sense HAL1_dup18727|chr14:102646199-102646605:+|1.2349841892213815|0.0041276961582324|8.22|151.0|23|2|anti-sense HAL1_dup18727|chr14:102646199-102646605:+|1.2349841892213815|0.0041276961582324|8.22|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_1 2 585.7889404296875 2 585.786579 1169.5586 NaN NaN NaN NaN NaN NaN NaN 25.596 1 29.346 28.846 29.846 3.7495 0 0 0 0.40746 1 3535 3535 0.69038 0.088878 1 55619 7843 34912 34930 63904 63904 -0.019392660577068455 YFFVLKRVMRK 11 Unmodified _YFFVLKRVMRK_ 0 0 0 MLT1L_dup10000|chr16:20716929-20717472:-|1.5065739819262578|0.2198408967520004|2.78|151.0|9|2|sense MLT1L_dup10000|chr16:20716929-20717472:-|1.5065739819262578|0.2198408967520004|2.78|151.0|9|2|sense MLT1L_dup10000|chr16:20716929-20717472:-|1.5065739819262578|0.2198408967520004|2.78|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 496.29534912109375 3 496.295358 1485.86425 NaN NaN NaN NaN NaN NaN NaN 74.04 1 74.04 73.54 74.54 0 0 0 0 0.38417 1 17174 17174 0.094841 0 1 55620 16483 34913 34931 63905 63905 0.14074801463857511 YFFVVGAY 8 Unmodified _YFFVVGAY_ 0 0 0 L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|176|3|anti-sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|176|3|anti-sense L1M1_dup9247|chr20:37783212-37786465:-|1.1904278863906472|0.0556023796337477|4.42|150.0|176|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 482.7399597167969 2 483.242004 964.469455 0.17872 8.6367E-05 -0.55163 -0.00026657 -0.37291 -0.0001802 483.2417341220252 99.983 0.27582 103.43 103.39 103.67 3.4483 63 34 2 0 0 0 0.72333 1 24710 24710 2.8892 0.31174 1 505230 55621 8650 34914 34932 63906 63906 -0.014201010171973394 YFFYVRFY 8 Unmodified _YFFYVRFY_ 0 0 0 REV__Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|4|1|sense REV__Tigger3b_dup6190|chr21:38484684-38485461:+|1.6827654995066728|0.0123627616404306|7.09|150.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 602.7939453125 2 602.794935 1203.57532 NaN NaN NaN NaN NaN NaN NaN 42.428 1 42.428 41.928 42.928 0 0 0 0 0.40746 1 8399 8399 0.69038 0 1 + 55622 32767 34915 34933 63907 63907 -0.018327651717072513 YFGKCFFLH 9 Unmodified _YFGKCFFLH_ 0 0 0 REV__L1PA7_dup2105|chr3:41925103-41931485:+|2.30110681533294|0.0613401516639413|5.23|151.0|334|3|anti-sense REV__L1PA7_dup2105|chr3:41925103-41931485:+|2.30110681533294|0.0613401516639413|5.23|151.0|334|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 581.28173828125 2 581.281137 1160.54772 0.4563 0.00026524 0.050278 2.9226E-05 0.50657 0.00029446 581.2811745847922 73.674 0.74014 76.91 76.631 77.371 3.2363 149 73 3 0 0 0 0.40174 1 18230 18230 7.9102 2.6133 1 251950 + 55623 30039 34916 34934 63908 63908 -0.02612991703631451 YFGLPLLCCF 10 Unmodified _YFGLPLLCCF_ 0 0 0 REV__ENSG00000185245|ENST00000329125|GP1BA REV__ENSG00000185245|ENST00000329125|GP1BA MULTI-MSMS UPN48_class_I_Rep_2 6 588.2852783203125 2 588.285031 1174.55551 0.48303 0.00028416 -0.78196 -0.00046002 -0.29893 -0.00017586 588.2844329702236 69.279 0.47807 72.8 72.477 72.956 3.5216 57 37 2 0 0 0 0.49259 1 16042 16042 12.532 1.7076 1 138150 + 55624 20847 34917 34935 63909 63909 -0.02478600498375272 YFGLPLLCCF 10 Unmodified _YFGLPLLCCF_ 0 0 0 REV__ENSG00000185245|ENST00000329125|GP1BA REV__ENSG00000185245|ENST00000329125|GP1BA MULTI-MSMS UPN48_class_I_Rep_3 7 588.28466796875 2 588.285031 1174.55551 0.5679 0.00033409 -1.1654 -0.00068556 -0.59746 -0.00035148 588.2841695912947 69.186 0.49465 72.695 72.399 72.893 3.5094 46 35 2 0 0 0 0.49259 1 15918 15918 12.532 1.7076 1 174550 + 55625 20847 34917 34935 63910 63910 -0.02478600498375272 YFGVSSYRI 9 Unmodified _YFGVSSYRI_ 0 0 0 MARNA_dup2665|chr15:50041117-50041658:-|3.4130373003392798|0.0091506609573369|8.54|151.0|14|3|sense MARNA_dup2665|chr15:50041117-50041658:-|3.4130373003392798|0.0091506609573369|8.54|151.0|14|3|sense MARNA_dup2665|chr15:50041117-50041658:-|3.4130373003392798|0.0091506609573369|8.54|151.0|14|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 545.787109375 2 546.279649 1090.54475 0.49903 0.00027261 -1.0367 -0.00056632 -0.53765 -0.00029371 546.780087280942 55.385 0.26754 58.893 58.771 59.039 3.5082 25 18 2 0 0 0 0.11959 1 11821 11821 7.9102 1.187 1 82892 55626 15749 34918 34936 63911 63911 0.003094564432331026 YFGYCECYHV 10 Unmodified _YFGYCECYHV_ 0 0 0 L1MB4_dup2816|chr6:4823726-4824774:-|1.5859866928466246|0.0097022727584265|7.35|151.0|61|2|anti-sense L1MB4_dup2816|chr6:4823726-4824774:-|1.5859866928466246|0.0097022727584265|7.35|151.0|61|2|anti-sense L1MB4_dup2816|chr6:4823726-4824774:-|1.5859866928466246|0.0097022727584265|7.35|151.0|61|2|anti-sense MSMS UPN48_class_I_Rep_3 7 642.2489624023438 2 642.246634 1282.47872 NaN NaN NaN NaN NaN NaN NaN 51.483 1 55.093 54.593 55.593 3.6105 0 0 0 0.53105 1 10555 10555 3.5965 0.60125 1 55627 10491 34919 34937 63912 63912 -0.15122443785480755 YFHFAKFQ 8 Unmodified _YFHFAKFQ_ 0 0 0 REV__nc|ENSG00000156219|Q13508-2|ART3 REV__nc|ENSG00000156219|Q13508-2|ART3 MULTI-SECPEP UPN47_class_I_Rep_1 2 543.769287109375 2 544.271627 1086.5287 -0.073967 -4.0258E-05 -0.75085 -0.00040867 -0.82482 -0.00044892 544.2712707544692 15.932 0.085722 19.428 19.396 19.481 3.4968 12 9 2 0 0 0 0.72333 1 928 928 2.3027 1.5091 1 20048 + 55628 19787 34920 34938 63913 63913 -0.011102050030103783 YFHGINCN 8 Unmodified _YFHGINCN_ 0 0 0 L1M3_dup4723|chr11:130084546-130085167:+|1.2442204587389598|0.0119163305966704|6.71|151.0|31|2|anti-sense L1M3_dup4723|chr11:130084546-130085167:+|1.2442204587389598|0.0119163305966704|6.71|151.0|31|2|anti-sense L1M3_dup4723|chr11:130084546-130085167:+|1.2442204587389598|0.0119163305966704|6.71|151.0|31|2|anti-sense MSMS UPN48_class_I_Rep_1 5 484.2062072753906 2 484.20817 966.401786 NaN NaN NaN NaN NaN NaN NaN 19.129 1 22.667 22.167 23.167 3.5378 0 0 0 0.40738 1 1397 1397 0.79363 0 1 55629 8771 34921 34939 63914 63914 -0.08275874219646084 YFHIHIQVT 9 Unmodified _YFHIHIQVT_ 0 0 0 L1MB3_dup7061|chr7:139887254-139887881:-|1.904680175942215|0.0578772231220914|5.04|151.0|2|1|sense L1MB3_dup7061|chr7:139887254-139887881:-|1.904680175942215|0.0578772231220914|5.04|151.0|2|1|sense L1MB3_dup7061|chr7:139887254-139887881:-|1.904680175942215|0.0578772231220914|5.04|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 579.3085327148438 2 579.308741 1156.60293 NaN NaN NaN NaN NaN NaN NaN 64.107 1 67.564 67.064 68.064 3.4578 0 0 0 0.40038 1 14486 14486 0.6015 0 1 55630 10450 34922 34940 63915 63915 0.030891380884895625 YFHIYVRYKYW 11 Unmodified _YFHIYVRYKYW_ 0 0 0 L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|119|2|anti-sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|119|2|anti-sense L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|119|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.6136474609375 3 546.613633 1636.81907 0.46206 0.00025257 -0.62742 -0.00034296 -0.16536 -9.0388E-05 546.6132549939686 40.893 0.16813 44.399 44.248 44.416 3.506 23 16 2 0 0 0 0.68583 1 7353 7353 0 0 1 106550 55631 9320 34923 34941 63916 63916 0.026132742023492028 YFHLAKRR 8 Unmodified _YFHLAKRR_ 0 0 0 L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|33|3|anti-sense L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|33|3|anti-sense L1MB2_dup5639|chr11:47368383-47368957:+|5.106780934309142|0.1111997562170159|5.52|151.0|33|3|anti-sense MSMS UPN47_class_I_Rep_3 4 545.8186645507812 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 24.041 1 27.392 26.892 27.892 3.3509 0 0 0 0.40738 1 3160 3160 0.79363 0 1 55632 10261 34924 34942 63917 63917 0.07835683765119938 YFHLEKKR 8 Unmodified _YFHLEKKR_ 0 0 0 L1ME1_dup19052|chr10:11185713-11186617:-|6.908918044997433|0.0252194629735167|8.1|151.0|13|2|sense L1ME1_dup19052|chr10:11185713-11186617:-|6.908918044997433|0.0252194629735167|8.1|151.0|13|2|sense L1ME1_dup19052|chr10:11185713-11186617:-|6.908918044997433|0.0252194629735167|8.1|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 560.8152465820312 2 560.816733 1119.61891 NaN NaN NaN NaN NaN NaN NaN 71.864 1 75.33 74.83 75.83 3.466 0 0 0 0.40738 1 16832 16832 0.79363 0 1 55633 12273 34925 34943 63918 63918 0.06388844325419996 YFHLHVHV 8 Unmodified _YFHLHVHV_ 0 0 0 REV__L1MC4_dup12507|chr8:140129690-140130217:+|1.0734850380898209|0.0129795640727728|6.37|151.0|32|3|anti-sense REV__L1MC4_dup12507|chr8:140129690-140130217:+|1.0734850380898209|0.0129795640727728|6.37|151.0|32|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 526.2412109375 2 526.277244 1050.53993 0.31885 0.0001678 -0.65659 -0.00034555 -0.33774 -0.00017775 526.2768696496685 63.334 0.095589 66.693 66.629 66.725 3.3595 11 7 2 0 0 0 0.72333 1 14979 14979 0.79363 0 1 25952 + 55634 26808 34926 34944 63919 63919 0.016686170911270892 YFHLRNKY 8 Unmodified _YFHLRNKY_ 0 0 0 REV__L1MB7_dup15863|chr12:66343569-66344503:-|2.8157630390118764|0.4930200126906192|2.51|151.0|34|3|sense REV__L1MB7_dup15863|chr12:66343569-66344503:-|2.8157630390118764|0.4930200126906192|2.51|151.0|34|3|sense MSMS UPN47_class_I_Rep_1 2 570.8016357421875 2 570.801083 1139.58761 NaN NaN NaN NaN NaN NaN NaN 43.947 1 47.643 47.143 48.143 3.6951 0 0 0 0.40625 1 9089 9089 2.3027 0 1 + 55635 26156 34927 34945 63920 63920 0.023402712913139112 YFHLVKNYTV 10 Unmodified _YFHLVKNYTV_ 0 0 0 REV__SEC24C|p.A805Vfs*25|1|0.26|ENSG00000176986|chr10:73769142-73769142|C/-|frameshift_variant REV__SEC24C|p.A805Vfs*25|1|0.26|ENSG00000176986|chr10:73769142-73769142|C/-|frameshift_variant MSMS UPN47_class_I_Rep_1 2 642.3450927734375 2 642.342781 1282.67101 NaN NaN NaN NaN NaN NaN NaN 57.234 1 60.692 60.192 61.192 3.4572 0 0 0 0.53105 1 13130 13130 1.6526 0.32309 1 + 55636 20606 34928 34946 63921 63921 0.040979629484809266 YFHMFVNMS 9 Unmodified _YFHMFVNMS_ 0 0 0 REV__L1M5_dup17363|chr5:97016900-97017678:-|1.8490000597289344|0.0451610496764262|5.36|150.0|51|3|anti-sense REV__L1M5_dup17363|chr5:97016900-97017678:-|1.8490000597289344|0.0451610496764262|5.36|150.0|51|3|anti-sense MSMS UPN47_class_I_Rep_3 4 588.2574462890625 2 588.254262 1174.49397 NaN NaN NaN NaN NaN NaN NaN 63.096 1 66.266 65.766 66.766 3.1698 0 0 0 0.39428 1 15005 15005 2.0598 0.21551 1 + 55637 24625 34929 34947 63922 63922 -0.08629532197619483 YFHPFIRF 8 Unmodified _YFHPFIRF_ 0 0 0 REV__HAL1_dup1754|chr1:235188193-235189118:+|1.5126077149562502|0.0221683776748674|6.09|151.0|43|1|anti-sense REV__HAL1_dup1754|chr1:235188193-235189118:+|1.5126077149562502|0.0221683776748674|6.09|151.0|43|1|anti-sense MSMS UPN47_class_I_Rep_3 4 563.7954711914062 2 563.795269 1125.57599 NaN NaN NaN NaN NaN NaN NaN 35.458 1 38.713 38.213 39.213 3.2547 0 0 0 0.40738 1 6570 6570 0.79363 0 1 + 55638 23380 34930 34948 63923 63923 0.018220742679886825 YFHTIQQKL 9 Unmodified _YFHTIQQKL_ 0 0 0 REV__L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|39|3|sense REV__L1MEd_dup14604|chr10:112616397-112617733:+|1.1165278885638177|0.0065655916355837|7.41|151.0|39|3|sense MSMS UPN48_class_I_Rep_3 7 589.3201904296875 2 589.321848 1176.62914 NaN NaN NaN NaN NaN NaN NaN 39.916 1 43.567 43.067 44.067 3.6509 0 0 0 0.39598 1 7034 7034 1.6526 0.17072 1 + 55639 28527 34931 34949 63924 63924 0.04789407260000189 YFHYHLCK 8 Unmodified _YFHYHLCK_ 0 0 0 L1MA3_dup184|chr1:93290717-93291889:+|1.309839241683416|0.0163335172402374|6.33|151.0|59|2|anti-sense L1MA3_dup184|chr1:93290717-93291889:+|1.309839241683416|0.0163335172402374|6.33|151.0|59|2|anti-sense L1MA3_dup184|chr1:93290717-93291889:+|1.309839241683416|0.0163335172402374|6.33|151.0|59|2|anti-sense MSMS UPN46_class_I_Rep_3 1 555.76171875 2 555.763112 1109.51167 NaN NaN NaN NaN NaN NaN NaN 19.09 1 19.09 18.59 19.59 0 0 0 0 0.40738 1 1767 1767 0.79363 0 1 55640 9488 34932 34950 63925 63925 -0.03870448880456934 YFHYIWFK 8 Unmodified _YFHYIWFK_ 0 0 0 REV__L1M5_dup44196|chr14:103442586-103443181:+|1.4083784154879329|0.0286638540472698|5.62|151.0|24|1|anti-sense REV__L1M5_dup44196|chr14:103442586-103443181:+|1.4083784154879329|0.0286638540472698|5.62|151.0|24|1|anti-sense MSMS UPN48_class_I_Rep_2 6 602.3016357421875 2 602.302927 1202.5913 NaN NaN NaN NaN NaN NaN NaN 40.271 1 44.012 43.512 44.512 3.7413 0 0 0 0.40738 1 7234 7234 0.79363 0.19213 1 + 55641 24677 34933 34951 63926 63926 -0.0018905893484770786 YFIDPDVY 8 Unmodified _YFIDPDVY_ 0 0 0 REV__ENSG00000188676|ENST00000502986|IDO2 REV__ENSG00000188676|ENST00000502986|IDO2 MULTI-MSMS UPN47_class_I_Rep_1 2 516.2385864257812 2 516.239658 1030.46476 -0.17007 -8.7796E-05 -0.64555 -0.00033326 -0.81562 -0.00042105 516.2393969911899 32.365 0.47429 36.078 35.769 36.244 3.7131 67 38 2 0 0 0 0.82752 1 5528 5528 14.582 0 1 90792 + 55642 20979 34934 34952 63927 63927 -0.04925029950618409 YFIDPDVY 8 Unmodified _YFIDPDVY_ 0 0 0 REV__ENSG00000188676|ENST00000502986|IDO2 REV__ENSG00000188676|ENST00000502986|IDO2 MULTI-MSMS UPN47_class_I_Rep_3 4 516.2387084960938 2 516.239658 1030.46476 -0.30523 -0.00015757 -0.54255 -0.00028009 -0.84778 -0.00043766 516.2393802681444 32.684 0.44417 35.971 35.681 36.125 3.2867 51 34 2 0 0 0 0.82752 1 5733 5733 14.582 0 1 80724 + 55643 20979 34934 34952 63928 63928 -0.04925029950618409 YFIFMCFY 8 Unmodified _YFIFMCFY_ 0 0 0 REV__L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|247|3|anti-sense REV__L1MA4A_dup6057|chr21:39165486-39169327:-|1.2335513220373229|0.3573275380515777|1.79|151.0|247|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.2462768554688 2 567.245375 1132.4762 NaN NaN NaN NaN NaN NaN NaN 27.815 1 31.372 30.872 31.872 3.5571 0 0 0 0.4032 1 3638 3638 6.3541 0 1 + 55644 25342 34935 34953 63929 63929 -0.08474247452477357 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 559.781494140625 2 559.278921 1116.54329 0.52946 0.00029612 -0.72355 -0.00040467 -0.19409 -0.00010855 559.2781752189484 67.285 0.25085 70.737 70.677 70.928 3.4516 23 17 2 0 0 0 0.72333 1 15445 15445 6.3541 0 1 63665 + 55645 24132 34936 34954 63930 63930 -0.010321328548798192 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.279052734375 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 66.793 1 70.29 69.79 70.79 3.4964 0 0 0 0.4032 1 15287 15287 6.3541 0 1 + 55646 24132 34936 34954 63931 63931 -0.010321328548798192 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2781982421875 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 66.972 1 70.469 69.969 70.969 3.4964 0 0 0 0.4032 1 15342 15342 6.3541 0 1 + 55647 24132 34936 34954 63932 63932 -0.010321328548798192 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_2 6 559.2799072265625 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 67.034 1 70.531 70.031 71.031 3.4964 0 0 0 0.4032 1 15361 15361 6.3541 0 1 + 55648 24132 34936 34954 63933 63933 -0.010321328548798192 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 559.2789306640625 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 66.662 1 70.17 69.67 70.67 3.5077 0 0 0 0.4032 1 15158 15158 6.3541 0 1 + 55649 24132 34936 34954 63934 63934 -0.010321328548798192 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 559.2769165039062 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 66.876 1 70.384 69.884 70.884 3.5077 0 0 0 0.4032 1 15224 15224 6.3541 0 1 + 55650 24132 34936 34954 63935 63935 -0.010321328548798192 YFIFPHFF 8 Unmodified _YFIFPHFF_ 0 0 0 REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense REV__L1M1_dup7394|chr12:11142633-11143845:+|1.2827748480296637|0.0439310834345025|4.87|151.0|59|2|anti-sense MSMS UPN48_class_I_Rep_3 7 559.2786254882812 2 559.278921 1116.54329 NaN NaN NaN NaN NaN NaN NaN 66.916 1 70.424 69.924 70.924 3.5077 0 0 0 0.40581 1 15236 15236 2.8892 0 1 + 55651 24132 34936 34954 63936 63936 -0.010321328548798192 YFIFYAQI 8 Unmodified _YFIFYAQI_ 0 0 0 REV__ENSG00000072756.17,TRNT1,chr3,+,I9.1,3143059,3144583|23|10.68|1|intron REV__ENSG00000072756.17,TRNT1,chr3,+,I9.1,3143059,3144583|23|10.68|1|intron MSMS UPN48_class_I_Rep_3 7 532.79052734375 2 532.776211 1063.53787 NaN NaN NaN NaN NaN NaN NaN 50.512 1 54.133 53.633 54.633 3.621 0 0 0 0.39624 1 10256 10256 9.3474 0 1 + 55652 17832 34937 34955 63937 63937 0.008641435626486782 YFIKKKYM 8 Unmodified _YFIKKKYM_ 0 0 0 REV__Ricksha_a_dup10|chr4:83085822-83086304:-|3.887909611963293|0.2895731936847332|3.75|151.0|29|2|anti-sense REV__Ricksha_a_dup10|chr4:83085822-83086304:-|3.887909611963293|0.2895731936847332|3.75|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.81591796875 2 560.814813 1119.61507 NaN NaN NaN NaN NaN NaN NaN 51.135 1 54.474 53.974 54.974 3.3386 0 0 0 0.40746 1 11301 11301 0.69038 0 1 + 55653 32173 34938 34956 63938 63938 0.060050385073282087 YFIKLCPIYM 10 Unmodified _YFIKLCPIYM_ 0 0 0 REV__Tigger1_dup4187|chr5:81698939-81699850:-|1.6332121776425974|0.0265291840212081|5.94|151.0|51|3|anti-sense REV__Tigger1_dup4187|chr5:81698939-81699850:-|1.6332121776425974|0.0265291840212081|5.94|151.0|51|3|anti-sense MSMS UPN48_class_I_Rep_1 5 645.8331298828125 2 645.834888 1289.65522 NaN NaN NaN NaN NaN NaN NaN 61.553 1 65.021 64.521 65.521 3.4678 0 0 0 0.53105 1 13704 13704 3.5965 0.31518 1 + 55654 32438 34939 34957 63939 63939 0.021982171155741526 YFILHELEL 9 Unmodified _YFILHELEL_ 0 0 0 REV__MLT2B1_dup3450|chr13:21522864-21523319:+|1.0559289103935827|0.0782921418778666|3.75|151.0|11|3|sense REV__MLT2B1_dup3450|chr13:21522864-21523319:+|1.0559289103935827|0.0782921418778666|3.75|151.0|11|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 588.8187866210938 2 588.818607 1175.62266 -0.038369 -2.2592E-05 -0.45071 -0.00026539 -0.48908 -0.00028798 588.818335972611 36.205 0.7683 39.874 39.549 40.317 3.6692 93 55 2 0 0 0 0.50015 1 6648 6648 0.6015 0.6015 1 135260 + 55655 31816 34940 34958 63940 63940 0.0418746930861289 YFINVFKK 8 Unmodified _YFINVFKK_ 0 0 0 L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|206|3|anti-sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|206|3|anti-sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|206|3|anti-sense MSMS UPN47_class_I_Rep_3 4 529.80517578125 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 31.878 1 35.177 34.677 35.677 3.2991 0 0 0 0.40746 1 5490 5490 0.69038 0 1 55656 13626 34941 34959 63941 63941 0.06955825207955968 YFINVFKK 8 Unmodified _YFINVFKK_ 0 0 0 L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|206|3|anti-sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|206|3|anti-sense L1PA10_dup6645|chr19:21042813-21046039:-|2.255660693292853|0.0676869600311137|5.06|151.0|206|3|anti-sense MSMS UPN48_class_I_Rep_1 5 529.8056030273438 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 26.067 1 29.633 29.133 30.133 3.5667 0 0 0 0.40604 1 3139 3139 2.5775 0 1 55657 13626 34941 34959 63942 63942 0.06955825207955968 YFIPTRLA 8 Unmodified _YFIPTRLA_ 0 0 0 L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|12|1|sense L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|12|1|sense L1ME3Cz_dup9352|chr13:99362111-99363321:-|1.832110930333982|0.2828240371787227|2.7|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 490.8521423339844 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.72 1 115.38 114.88 115.88 3.6666 0 0 0 0.40798 1 26581 26581 0 0 1 55658 12786 34942 34960 63943 63943 0.058509656567821366 YFIVPIKI 8 Unmodified _YFIVPIKI_ 0 0 0 REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|24|2|sense REV__L1MA4A_dup1021|chr3:31652270-31653519:+|2.051847882197214|0.2639126170668893|2.96|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 496.5699768066406 2 496.812596 991.61064 NaN NaN NaN NaN NaN NaN NaN 57.014 1 60.508 60.008 61.008 3.4942 0 0 0 0.40581 1 12318 12318 2.8892 0 1 + 55659 25234 34943 34961 63944 63944 0.1144989735606714 YFKFRDTCE 9 Unmodified _YFKFRDTCE_ 0 0 0 L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|128|1|anti-sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|128|1|anti-sense L1PA7_dup2666|chr3:160887877-160892141:+|1.472229896282519|0.0396039634905518|5.22|151.0|128|1|anti-sense MSMS UPN48_class_I_Rep_1 5 604.7748413085938 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 23.503 1 27.068 26.568 27.568 3.5655 0 0 0 0.39428 1 2463 2463 2.0598 0 1 55660 14791 34944 34962 63945 63945 -0.062271086424289024 YFKFRISF 8 Unmodified _YFKFRISF_ 0 0 0 REV__L1ME4a_dup24053|chr11:128719974-128720233:-|2.744525940092762|0.0919886164635705|4.9|151.0|3|1|sense REV__L1ME4a_dup24053|chr11:128719974-128720233:-|2.744525940092762|0.0919886164635705|4.9|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.3063354492188 2 554.302927 1106.5913 0.51606 0.00028606 4.1963 0.002326 4.7124 0.0026121 554.3057477699418 66.383 0.089851 69.87 69.836 69.925 3.4866 9 7 2 0 0 0 0.82752 1 15166 15166 7.2892 0.65886 1 36968 + 55661 28221 34945 34963 63946 63946 0.04226941065189749 YFKFRISF 8 Unmodified _YFKFRISF_ 0 0 0 REV__L1ME4a_dup24053|chr11:128719974-128720233:-|2.744525940092762|0.0919886164635705|4.9|151.0|3|1|sense REV__L1ME4a_dup24053|chr11:128719974-128720233:-|2.744525940092762|0.0919886164635705|4.9|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 554.302927 1106.5913 0.4335 0.00024029 4.2489 0.0023552 4.6824 0.0025955 554.3054710509953 66.129 0.1599 69.636 69.573 69.733 3.5077 -0.11689 1.9791E-05 NaN 7.2892 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 74781 + 55662 28221 34945 34963 0.04226941065189749 YFKIDNVKKA 10 Unmodified _YFKIDNVKKA_ 0 0 0 nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1;ENSG00000113889|ENST00000644859|KNG1 nc|ENSG00000113889|P01042-3|KNG1 nc|ENSG00000113889|P01042-3|KNG1 MSMS UPN46_class_I_Rep_3 1 613.0180053710938 2 613.350606 1224.68666 NaN NaN NaN NaN NaN NaN NaN 86.104 1 86.104 85.604 86.604 0 0 0 0 0.53105 1 20576 20576 3.5965 0.60125 1 55663 2062 34946 34964 63947 63947 0.08330249465552697 YFKIIRTIN 9 Unmodified _YFKIIRTIN_ 0 0 0 L1PA10_dup5530|chr13:24463515-24465781:+|4.722842570092662|0.0529703610548575|6.48|151.0|32|2|sense L1PA10_dup5530|chr13:24463515-24465781:+|4.722842570092662|0.0529703610548575|6.48|151.0|32|2|sense L1PA10_dup5530|chr13:24463515-24465781:+|4.722842570092662|0.0529703610548575|6.48|151.0|32|2|sense MSMS UPN47_class_I_Rep_2 3 584.347900390625 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 115.91 1 119.41 118.91 119.91 3.4965 0 0 0 0.4029 1 28280 28280 0 0 1 55664 13609 34947 34965 63948 63948 0.10450570673788206 YFKKVFYF 8 Unmodified _YFKKVFYF_ 0 0 0 L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|155|2|anti-sense L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|155|2|anti-sense L1MA4A_dup52|chr1:42240911-42244319:+|2.265406708148733|0.107866818634793|4.39|151.0|155|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 571.3074951171875 2 571.307678 1140.6008 0.49436 0.00028243 -0.55084 -0.0003147 -0.056482 -3.2269E-05 571.3072996683178 67.887 0.60381 71.396 71.095 71.699 3.5083 71 53 2 0 0 0 0.82752 1 15678 15678 5.2307 1.2863 1 109320 55665 9819 34948 34966 63949 63949 0.0361270935070479 YFKQFFYY 8 Unmodified _YFKQFFYY_ 0 0 0 REV__L1MD2_dup7560|chr11:20500112-20500808:+|1.3865848408660189|0.1733479391393549|3.0|150.0|27|1|anti-sense REV__L1MD2_dup7560|chr11:20500112-20500808:+|1.3865848408660189|0.1733479391393549|3.0|150.0|27|1|anti-sense MSMS UPN47_class_I_Rep_3 4 603.285400390625 2 603.286943 1204.55933 NaN NaN NaN NaN NaN NaN NaN 82.107 1 85.444 84.944 85.944 3.337 0 0 0 0.40404 1 20571 20571 5.2307 0 1 + 55666 27437 34949 34967 63950 63950 -0.034764714086122694 YFKRKMRKI 9 Unmodified _YFKRKMRKI_ 0 0 0 REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN46_class_I_Rep_3 1 635.3847045898438 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 73.941 1 73.941 73.441 74.441 0 0 0 0 0.4007 1 17149 17149 0.52476 0 1 + 55667 18468 34950 34968 63951 63951 0.1303400119552407 YFKRKMRKI 9 Unmodified _YFKRKMRKI_ 0 0 0 REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant REV__MAK|p.E524Dfs*68|1|0.05|ENSG00000111837|chr6:10775353-10775354|-/A|frameshift_variant MSMS UPN47_class_I_Rep_3 4 635.3851318359375 2 635.38426 1268.75397 NaN NaN NaN NaN NaN NaN NaN 70.999 1 74.21 73.71 74.71 3.2113 0 0 0 0.4007 1 17400 17400 0.52476 0 1 + 55668 18468 34950 34968 63952 63952 0.1303400119552407 YFLAADLADN 10 Unmodified _YFLAADLADN_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2 MSMS UPN48_class_I_Rep_3 7 556.7640991210938 2 556.766571 1111.51859 NaN NaN NaN NaN NaN NaN NaN 118.33 1 121.92 121.42 122.42 3.5847 0 0 0 0.53105 1 28141 28141 1.3295 0 1 + 55669 18247 34951 34969 63953 63953 -0.032708575189190014 YFLATTANYL 10 Unmodified _YFLATTANYL_ 0 0 0 L1MA3_dup5498|chrX:97008062-97010567:-|1.492384733799604|0.0330917208209818|5.5|149.0|148|3|anti-sense L1MA3_dup5498|chrX:97008062-97010567:-|1.492384733799604|0.0330917208209818|5.5|149.0|148|3|anti-sense L1MA3_dup5498|chrX:97008062-97010567:-|1.492384733799604|0.0330917208209818|5.5|149.0|148|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 588.8004150390625 2 588.800414 1175.58628 0.60162 0.00035423 0.039486 2.325E-05 0.64111 0.00037748 588.8003705858599 55.962 0.41908 59.496 59.17 59.589 3.5333 41 30 2 0 0 0 0.33585 1 11973 11973 25.399 2.663 1 140590 55670 9572 34952 34970 63954 63954 0.005505924119006522 YFLCSKVHFY 10 Unmodified _YFLCSKVHFY_ 0 0 0 L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|68|1|anti-sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|68|1|anti-sense L1MDb_dup211|chr3:60665062-60666667:-|1.7409986493386884|0.1532292692305995|3.51|150.0|68|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 436.2140808105469 3 436.214482 1305.62162 -1.2047 -0.0005255 0.12647 5.5169E-05 -1.0782 -0.00047034 436.2144846722681 17.917 1.5938 21.275 20.512 22.106 3.3581 340 179 2 0 0 0 0.56034 1 1400 1400 3.5871 0 1 103320 55671 12157 34953 34971 63955 63955 -0.0189706833193668 YFLEHFSL 8 Unmodified _YFLEHFSL_ 0 0 0 L1PB1_dup2836|chr4:168951356-168953324:-|1.1244863262125386|0.0356509696414911|4.98|151.0|101|2|anti-sense L1PB1_dup2836|chr4:168951356-168953324:-|1.1244863262125386|0.0356509696414911|4.98|151.0|101|2|anti-sense L1PB1_dup2836|chr4:168951356-168953324:-|1.1244863262125386|0.0356509696414911|4.98|151.0|101|2|anti-sense MSMS UPN47_class_I_Rep_1 2 528.2647705078125 2 528.263468 1054.51238 NaN NaN NaN NaN NaN NaN NaN 73.287 1 76.673 76.173 77.173 3.3861 0 0 0 0.4044 1 17987 17987 4.756 0 1 55672 15075 34954 34972 63956 63956 -0.012693309597580082 YFLFLMMY 8 Unmodified _YFLFLMMY_ 0 0 0 REV__L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|181|3|anti-sense REV__L1PA10_dup6647|chr19:21109607-21112816:-|1.8993987521085869|0.0974262540864181|4.29|150.0|181|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 564.2827758789062 2 564.26885 1126.52315 0.5166 0.0002915 -1.3966 -0.00078803 -0.87995 -0.00049653 564.2680140408536 53.231 0.63795 56.557 56.288 56.926 3.3266 66 39 2 0 0 0 0.82752 1 11870 11870 11.114 1.0405 1 145360 + 55673 28985 34955 34973 63957 63957 -0.03505387901350332 YFLFNFHGVY 10 Unmodified _YFLFNFHGVY_ 0 0 0 ENST00000227756.4_1_11:11292512-11292662:-|nuORF ENST00000227756.4_1_11:11292512-11292662:-|nuORF ENST00000227756.4_1_11:11292512-11292662:-|nuORF MSMS UPN47_class_I_Rep_2 3 436.2138366699219 3 436.213358 1305.61824 NaN NaN NaN NaN NaN NaN NaN 18.211 1 21.6 21.1 22.1 3.3898 0 0 0 0.53105 1 1502 1502 3.8763 0.80407 1 55674 5879 34956 34974 63958 63958 -0.022339951143067083 YFLFVTLF 8 Unmodified _YFLFVTLF_ 0 0 0 L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|27|2|sense;L1M4_dup6396|chr6:24945158-24945810:+|1.0854362849122274|0.0099765760518072|6.77|150.0|27|3|sense L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|27|2|sense L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|27|2|sense MSMS UPN47_class_I_Rep_2 3 525.7639770507812 2 525.288954 1048.56336 NaN NaN NaN NaN NaN NaN NaN 54.969 1 58.279 57.779 58.779 3.3102 0 0 0 0.40604 1 12470 12470 2.5775 0 1 55675 8899 34957 34975 63959 63959 0.04101618085064729 YFLFYIAI 8 Unmodified _YFLFYIAI_ 0 0 0 L1MEg_dup8983|chrX:155551885-155553978:-|1.332759835504018|0.0489242185062332|4.77|150.0|145|3|anti-sense L1MEg_dup8983|chrX:155551885-155553978:-|1.332759835504018|0.0489242185062332|4.77|150.0|145|3|anti-sense L1MEg_dup8983|chrX:155551885-155553978:-|1.332759835504018|0.0489242185062332|4.77|150.0|145|3|anti-sense MSMS UPN47_class_I_Rep_3 4 525.2877807617188 2 525.288954 1048.56336 NaN NaN NaN NaN NaN NaN NaN 54.651 1 57.837 57.337 58.337 3.1856 0 0 0 0.40581 1 12427 12427 2.8892 0 1 55676 13432 34958 34976 63960 63960 0.04101618085064729 YFLKFHVCF 9 Unmodified _YFLKFHVCF_ 0 0 0 L1MC4_dup21805|chr17:51247750-51248445:-|1.2277754734251067|0.0153177941031433|6.32|151.0|48|3|anti-sense L1MC4_dup21805|chr17:51247750-51248445:-|1.2277754734251067|0.0153177941031433|6.32|151.0|48|3|anti-sense L1MC4_dup21805|chr17:51247750-51248445:-|1.2277754734251067|0.0153177941031433|6.32|151.0|48|3|anti-sense MSMS UPN48_class_I_Rep_1 5 602.3021850585938 2 602.304613 1202.59467 NaN NaN NaN NaN NaN NaN NaN 46.695 1 50.214 49.714 50.714 3.5192 0 0 0 0.39518 1 9146 9146 1.8442 0 1 55677 11460 34959 34977 63961 63961 0.0014786784752232052 YFLKQMKTKT 10 Unmodified _YFLKQMKTKT_ 0 0 0 L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|36|1|sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|36|1|sense L1MA4A_dup1389|chr4:5347977-5354280:+|1.4174872306951447|0.0205963726246599|6.1|149.0|36|1|sense MSMS UPN47_class_I_Rep_2 3 644.3615112304688 2 644.360116 1286.70568 NaN NaN NaN NaN NaN NaN NaN 104.33 1 107.86 107.36 108.36 3.5289 0 0 0 0.53105 1 25342 25342 2.9952 0 1 55678 9757 34960 34978 63962 63962 0.07379462764947675 YFLLLAYLW 9 Unmodified _YFLLLAYLW_ 0 0 0 L1MEd_dup8256|chr6:78950091-78951146:-|2.4105183710820124|0.2158132888621757|3.48|151.0|60|2|anti-sense L1MEd_dup8256|chr6:78950091-78951146:-|2.4105183710820124|0.2158132888621757|3.48|151.0|60|2|anti-sense L1MEd_dup8256|chr6:78950091-78951146:-|2.4105183710820124|0.2158132888621757|3.48|151.0|60|2|anti-sense MSMS UPN46_class_I_Rep_3 1 601.0869750976562 2 601.336436 1200.65832 NaN NaN NaN NaN NaN NaN NaN 45.083 1 45.083 44.583 45.583 0 0 0 0 0.40038 1 9134 9134 0.6015 0 1 55679 13218 34961 34979 63963 63963 0.06601551556263985 YFLLSHLSL 9 Unmodified _YFLLSHLSL_ 0 0 0 ENSG00000175143|ENST00000642005|OR2T1;ENSG00000177275|ENST00000318244|OR2AJ1;nc|ENSG00000175143|O43869|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 MSMS UPN48_class_I_Rep_3 7 546.7760009765625 2 546.808042 1091.60153 NaN NaN NaN NaN NaN NaN NaN 47.457 1 51.093 50.593 51.593 3.6363 0 0 0 0.26661 1 9314 9314 12.532 0 1 55680 4709 34962 34980 63964 63964 0.059395039997752974 YFLLSHLSL 9 Unmodified _YFLLSHLSL_ 0 0 0 ENSG00000175143|ENST00000642005|OR2T1;ENSG00000177275|ENST00000318244|OR2AJ1;nc|ENSG00000175143|O43869|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 ENSG00000175143|ENST00000642005|OR2T1 MSMS UPN48_class_I_Rep_3 7 546.806640625 2 546.808042 1091.60153 NaN NaN NaN NaN NaN NaN NaN 47.494 1 51.128 50.628 51.628 3.6339 0 0 0 0.19137 1 9325 9325 16.942 0 1 55681 4709 34962 34980 63965 63965 0.059395039997752974 YFLLSTSLGL 10 Unmodified _YFLLSTSLGL_ 0 0 0 L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|77|1|anti-sense L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|77|1|anti-sense L1MEg_dup4984|chr5:109388997-109390789:-|1.460869746376286|0.0211471009783094|6.11|151.0|77|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.8153076171875 2 557.313158 1112.61176 0.4069 0.00022677 0.79836 0.00044493 1.2053 0.0006717 557.8151834259739 61.142 0.25816 64.655 64.528 64.786 3.5129 24 21 2 0 0 0 0.33585 1 13481 13481 25.399 0 1 106940 55682 13390 34963 34981 63966 63966 0.05996066934335431 YFLLWKMI 8 Unmodified _YFLLWKMI_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MSMS UPN48_class_I_Rep_1 5 557.314697265625 2 557.311906 1112.60926 NaN NaN NaN NaN NaN NaN NaN 61.338 1 64.806 64.306 65.306 3.4678 0 0 0 0.33946 1 13638 13638 24.674 4.2594 1 + 55683 19613 34964 34982 63967 63967 0.05745939995676963 YFLLWKMI 8 Unmodified _YFLLWKMI_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MSMS UPN48_class_I_Rep_1 5 557.3131103515625 2 557.311906 1112.60926 NaN NaN NaN NaN NaN NaN NaN 61.49 1 64.958 64.458 65.458 3.4678 0 0 0 0.33946 1 13684 13684 24.674 5.4169 1 + 55684 19613 34964 34982 63968 63968 0.05745939995676963 YFLPFYEL 8 Unmodified _YFLPFYEL_ 0 0 0 L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense MSMS UPN48_class_I_Rep_1 5 546.2740478515625 2 546.276044 1090.53753 NaN NaN NaN NaN NaN NaN NaN 47.265 1 50.787 50.287 51.287 3.5219 0 0 0 0.38221 1 9321 9321 14.582 0 1 55685 9261 34965 34983 63969 63969 -0.004112761572059753 YFLPFYEL 8 Unmodified _YFLPFYEL_ 0 0 0 L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense MSMS UPN48_class_I_Rep_1 5 546.2754516601562 2 546.276044 1090.53753 NaN NaN NaN NaN NaN NaN NaN 47.443 1 50.965 50.465 51.465 3.5219 0 0 0 0.38221 1 9377 9377 14.582 0 1 55686 9261 34965 34983 63970 63970 -0.004112761572059753 YFLPFYEL 8 Unmodified _YFLPFYEL_ 0 0 0 L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense MSMS UPN48_class_I_Rep_3 7 546.2752685546875 2 546.276044 1090.53753 NaN NaN NaN NaN NaN NaN NaN 47.155 1 50.791 50.291 51.291 3.6363 0 0 0 0.33253 1 9226 9226 26.341 0 1 55687 9261 34965 34983 63971 63971 -0.004112761572059753 YFLPFYEL 8 Unmodified _YFLPFYEL_ 0 0 0 L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense L1MA1_dup1278|chr5:78253977-78258955:+|1.60578278063368|0.0233706637173087|6.1|150.0|262|3|anti-sense MSMS UPN48_class_I_Rep_3 7 546.3047485351562 2 546.276044 1090.53753 NaN NaN NaN NaN NaN NaN NaN 47.171 1 50.807 50.307 51.307 3.6363 0 0 0 0.38221 1 9231 9231 14.582 0 1 55688 9261 34965 34983 63972 63972 -0.004112761572059753 YFLQPLLP 8 Unmodified _YFLQPLLP_ 0 0 0 ENST00000373913.7_1_20:35156076-35156352:+|nuORF ENST00000373913.7_1_20:35156076-35156352:+|nuORF ENST00000373913.7_1_20:35156076-35156352:+|nuORF MSMS UPN47_class_I_Rep_1 2 495.30621337890625 2 495.786579 989.558604 NaN NaN NaN NaN NaN NaN NaN 39.899 1 43.566 43.066 44.066 3.6668 0 0 0 0.40738 1 7853 7853 0.79363 0 1 55689 6422 34966 34984 63973 63973 0.0634073394232928 YFLSPWTTI 9 Unmodified _YFLSPWTTI_ 0 0 0 REV__L1M4b_dup3933|chr18:13595665-13599473:-|1.9751199745175383|0.0548403871617865|5.17|151.0|106|3|sense REV__L1M4b_dup3933|chr18:13595665-13599473:-|1.9751199745175383|0.0548403871617865|5.17|151.0|106|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.2918090820312 2 564.292225 1126.5699 0.20532 0.00011586 -0.62292 -0.00035151 -0.4176 -0.00023565 564.2919853269905 48.904 0.65167 52.563 52.252 52.904 3.6592 95 44 3 0 0 0 0.28552 1 10616 10616 14.838 3.3436 1 148560 + 55690 24549 34967 34985 63974 63974 0.011675112457851355 YFLVWLKI 8 Unmodified _YFLVWLKI_ 0 0 0 L1MA3_dup1277|chr2:232091952-232094435:-|1.1125469404993902|0.0442740262155428|4.65|151.0|164|3|anti-sense L1MA3_dup1277|chr2:232091952-232094435:-|1.1125469404993902|0.0442740262155428|4.65|151.0|164|3|anti-sense L1MA3_dup1277|chr2:232091952-232094435:-|1.1125469404993902|0.0442740262155428|4.65|151.0|164|3|anti-sense MSMS UPN48_class_I_Rep_2 6 541.7924194335938 2 541.325871 1080.63719 NaN NaN NaN NaN NaN NaN NaN 48.538 1 52.256 51.756 52.756 3.7175 0 0 0 0.40581 1 9709 9709 2.8892 0 1 55691 9467 34968 34986 63975 63975 0.10009586247406332 YFLYPKNRN 9 Unmodified _YFLYPKNRN_ 0 0 0 REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 607.8206787109375 2 607.819473 1213.62439 0.44313 0.00026934 1.872 0.0011378 2.3151 0.0014072 608.321700503083 40.536 0.16855 44.041 43.949 44.118 3.5048 19 16 2 0 0 0 0.48643 1 7268 7268 2.0598 0.57785 1 194180 + 55692 23153 34969 34987 63976 63976 0.026125231172272834 YFLYPKNRN 9 Unmodified _YFLYPKNRN_ 0 0 0 REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 607.819473 1213.62439 0.44313 0.00026934 1.872 0.0011378 2.3151 0.0014072 608.321700503083 40.536 0.16855 44.041 43.949 44.118 3.5048 -0.10603 -5.9085E-05 NaN 2.0598 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 194180 + 55693 23153 34969 34987 0.026125231172272834 YFLYPKNRN 9 Unmodified _YFLYPKNRN_ 0 0 0 REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF REV__ENST00000588465.5_1_19:10713206-10745972:+|nuORF MULTI-MATCH UPN48_class_I_Rep_3 7 2 607.819473 1213.62439 0.46765 0.00028425 2.1826 0.0013266 2.6502 0.0016109 607.8202607255504 40.602 0.10547 44.253 44.212 44.318 3.6509 0.10603 0.00031846 NaN 2.0598 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 64625 + 55694 23153 34969 34987 0.026125231172272834 YFMDINKRI 9 Unmodified _YFMDINKRI_ 0 0 0 L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|23|2|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|23|2|sense L1MC1_dup3584|chr4:105176122-105177800:+|2.255705830231291|0.0905792614323283|4.64|151.0|23|2|sense MSMS UPN48_class_I_Rep_3 7 600.3172607421875 2 600.315709 1198.61686 NaN NaN NaN NaN NaN NaN NaN 34.901 1 38.573 38.073 39.073 3.6721 0 0 0 0.40038 1 5595 5595 0.6015 0 1 55695 11132 34970 34988 63977 63977 0.025500475253011246 YFMHLIQI 8 Unmodified _YFMHLIQI_ 0 0 0 REV__L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|37|1|anti-sense REV__L1MD2_dup7106|chr10:32301208-32301991:+|1.081326769992676|0.0653677600112019|4.05|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 532.78466796875 2 532.783513 1063.55247 NaN NaN NaN NaN NaN NaN NaN 54.171 1 57.686 57.186 58.186 3.5143 0 0 0 0.40364 1 11443 11443 5.7604 0 1 + 55696 27428 34971 34989 63978 63978 0.02323892439176234 YFMHLKHY 8 Unmodified _YFMHLKHY_ 0 0 0 Charlie4a_dup2910|chr17:8939290-8939738:-|1.5530495297345854|0.0232589471888347|6.06|151.0|18|3|sense Charlie4a_dup2910|chr17:8939290-8939738:-|1.5530495297345854|0.0232589471888347|6.06|151.0|18|3|sense Charlie4a_dup2910|chr17:8939290-8939738:-|1.5530495297345854|0.0232589471888347|6.06|151.0|18|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.2919311523438 2 569.778762 1137.54297 0.083628 4.765E-05 -0.79518 -0.00045308 -0.71155 -0.00040543 569.77829754553 45.035 0.23471 48.735 48.585 48.82 3.6999 20 14 2 0 0 0 0.72333 1 9386 9386 2.5775 0.73324 1 47621 55697 523 34972 34990 63979 63979 -0.020298758463695776 YFMQRHQL 8 Unmodified _YFMQRHQL_ 0 0 0 ENST00000474260.1_1_10:105768003-105778705:+|nuORF;nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK ENST00000474260.1_1_10:105768003-105778705:+|nuORF ENST00000474260.1_1_10:105768003-105778705:+|nuORF MSMS UPN47_class_I_Rep_2 3 561.722900390625 2 561.779293 1121.54403 NaN NaN NaN NaN NaN NaN NaN 76.306 1 79.628 79.128 80.128 3.3216 0 0 0 0.40746 1 18884 18884 0.69038 0 1 55698 1012 34973 34991 63980 63980 -0.011876614774564587 YFNNRLMT 8 Unmodified _YFNNRLMT_ 0 0 0 REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF MSMS UPN47_class_I_Rep_2 3 529.759765625 2 529.758027 1057.5015 NaN NaN NaN NaN NaN NaN NaN 21.578 1 25.002 24.502 25.502 3.4241 0 0 0 0.40746 1 2432 2432 0.69038 0 1 + 55699 22816 34974 34992 63981 63981 -0.024950566056986645 YFNVKHLAI 9 Unmodified _YFNVKHLAI_ 0 0 0 REV__nc|ENSG00000160683|P32302-2|CXCR5 REV__nc|ENSG00000160683|P32302-2|CXCR5 MSMS UPN47_class_I_Rep_1 2 552.8125 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 21.985 1 25.66 25.16 26.16 3.6749 0 0 0 0.40038 1 2479 2479 0.6015 0 1 + 55700 19888 34975 34993 63982 63982 0.06510326093894037 YFPDTGIPEV 10 Unmodified _YFPDTGIPEV_ 0 0 0 nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ENSG00000174606|ENST00000366962|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 MSMS UPN47_class_I_Rep_2 3 569.2587890625 2 569.276772 1136.53899 NaN NaN NaN NaN NaN NaN NaN 73.159 1 76.456 75.956 76.956 3.2971 0 0 0 0.53105 1 17973 17973 13.906 0 1 55701 4687 34976 34994 63983 63983 -0.02381686859121146 YFPHCRHE 8 Unmodified _YFPHCRHE_ 0 0 0 Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|147|3|anti-sense Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|147|3|anti-sense Tigger1_dup2064|chr3:17073183-17075595:-|1.8152526970923728|0.1376477185916628|3.72|151.0|147|3|anti-sense MSMS UPN46_class_I_Rep_3 1 544.793212890625 2 544.740168 1087.46578 NaN NaN NaN NaN NaN NaN NaN 112.44 1 112.44 111.94 112.94 0 0 0 0 0.40738 1 27756 27756 0.79363 0 1 55702 33048 34977 34995 63984 63984 -0.07445094062700264 YFPINYKI 8 Unmodified _YFPINYKI_ 0 0 0 nc|ENSG00000157368|Q6ZMJ4-2|IL34;ENSG00000157368|ENST00000288098|IL34 nc|ENSG00000157368|Q6ZMJ4-2|IL34 nc|ENSG00000157368|Q6ZMJ4-2|IL34 MSMS UPN47_class_I_Rep_1 2 529.7710571289062 2 529.289485 1056.56442 NaN NaN NaN NaN NaN NaN NaN 62.211 1 65.579 65.079 66.079 3.3681 0 0 0 0.40604 1 14641 14641 2.5775 0 1 55703 3759 34978 34996 63985 63985 0.038398324539684836 YFPIRLWH 8 Unmodified _YFPIRLWH_ 0 0 0 MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|11|2|sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|11|2|sense MER4E_dup632|chr16:20692144-20692888:-|1.524544864957906|0.215134703851508|2.83|149.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 566.307373046875 2 566.308544 1130.60253 NaN NaN NaN NaN NaN NaN NaN 34.833 1 34.833 34.333 35.333 0 0 0 0 0.40738 1 6268 6268 0.79363 0 1 55704 16040 34979 34997 63986 63986 0.04245763159292437 YFPKYPQF 8 Unmodified _YFPKYPQF_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MULTI-MSMS UPN48_class_I_Rep_2 6 545.2744140625 2 545.273835 1088.53312 0.59146 0.00032251 -0.38245 -0.00020854 0.20901 0.00011397 545.2737417142835 54.609 0.1147 58.191 58.159 58.273 3.5817 11 8 2 0 0 0 0.82752 1 11575 11575 9.3474 0 1 56941 + 55705 19444 34980 34998 63987 63987 -0.007607405801081768 YFPKYPQF 8 Unmodified _YFPKYPQF_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 545.273835 1088.53312 0.3427 0.00018686 0.19049 0.00010387 0.53319 0.00029073 545.7754201098091 54.603 0.15591 58.172 58.07 58.226 3.5694 -0.0095218 0.00033911 NaN 9.3474 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 64735 + 55706 19444 34980 34998 -0.007607405801081768 YFPLPLNQN 9 Unmodified _YFPLPLNQN_ 0 0 0 MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|1|1|sense MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|1|1|sense MLT1H2_dup878|chr3:45670315-45670755:-|1.2047139524276724|0.127566531980856|3.24|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.2877197265625 2 553.287474 1104.5604 0.53389 0.0002954 -0.076067 -4.2087E-05 0.45783 0.00025331 553.2873437203585 75.677 0.54028 79.176 78.876 79.416 3.4996 87 51 2 0 0 0 0.40174 1 18002 18002 7.9102 3.0131 1 143430 55707 16450 34981 34999 63988 63988 0.012297429602767807 YFPPKGYAF 9 Unmodified _YFPPKGYAF_ 0 0 0 nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2 nc|ENSG00000113742|Q17RY0-3|CPEB4 nc|ENSG00000113742|Q17RY0-3|CPEB4 MSMS UPN48_class_I_Rep_2 6 545.2760009765625 2 545.273835 1088.53312 NaN NaN NaN NaN NaN NaN NaN 55.039 1 58.595 58.095 59.095 3.5559 0 0 0 0.34056 1 11692 11692 8.5933 0 1 55708 1837 34982 35000 63989 63989 -0.007607405801081768 YFPPRYIP 8 Unmodified _YFPPRYIP_ 0 0 0 L1MB4_dup2047|chr4:67528329-67529312:-|1.1344363006149338|0.0204518214548326|5.79|151.0|9|1|sense L1MB4_dup2047|chr4:67528329-67529312:-|1.1344363006149338|0.0204518214548326|5.79|151.0|9|1|sense L1MB4_dup2047|chr4:67528329-67529312:-|1.1344363006149338|0.0204518214548326|5.79|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 526.7816162109375 2 526.781828 1051.5491 NaN NaN NaN NaN NaN NaN NaN 118.88 1 122.5 122 123 3.6189 0 0 0 0.40738 1 29009 29009 0.79363 0 1 55709 10487 34983 35001 63990 63990 0.02538965656799519 YFQFPWGTY 9 Unmodified _YFQFPWGTY_ 0 0 0 ENST00000465804.5_1_3:149236734-149236857:-|nuORF ENST00000465804.5_1_3:149236734-149236857:-|nuORF ENST00000465804.5_1_3:149236734-149236857:-|nuORF MSMS UPN48_class_I_Rep_2 6 604.7742919921875 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 24.523 1 28.163 27.663 28.663 3.6397 0 0 0 0.39428 1 2862 2862 2.0598 0 1 55710 6893 34984 35002 63991 63991 -0.061619459310350067 YFQKRLKM 8 Unmodified _YFQKRLKM_ 0 0 0 REV__L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|1|1|sense REV__L1MB8_dup10414|chr10:91947143-91947945:-|1.1218988828049332|0.0253818332296449|5.47|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 556.966064453125 2 557.315512 1112.61647 NaN NaN NaN NaN NaN NaN NaN 87.679 1 87.679 87.179 88.179 0 0 0 0 0.40746 1 21022 21022 0.69038 0 1 + 55711 26199 34985 35003 63992 63992 0.06466672596093304 YFQLGNSFY 9 Unmodified _YFQLGNSFY_ 0 0 0 REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|163|3|anti-sense REV__L1PB2_dup2483|chr16:31303465-31306153:-|1.0478713933467327|0.0138699212760655|6.24|151.0|163|3|anti-sense MSMS UPN47_class_I_Rep_3 4 569.761962890625 2 569.763832 1137.51311 NaN NaN NaN NaN NaN NaN NaN 35.815 1 39.07 38.57 39.57 3.2547 0 0 0 0.36505 1 6679 6679 7.2892 0.56607 1 + 55712 30527 34986 35004 63993 63993 -0.05014536310727635 YFQNFHHL 8 Unmodified _YFQNFHHL_ 0 0 0 L1MB4_dup1442|chr3:23816716-23817020:+|1.0189810021624992|0.0117972760833127|6.43|151.0|22|3|anti-sense L1MB4_dup1442|chr3:23816716-23817020:+|1.0189810021624992|0.0117972760833127|6.43|151.0|22|3|anti-sense L1MB4_dup1442|chr3:23816716-23817020:+|1.0189810021624992|0.0117972760833127|6.43|151.0|22|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.2642822265625 2 553.264333 1104.51411 NaN NaN NaN NaN NaN NaN NaN 26.289 1 30.055 29.555 30.555 3.7663 0 0 0 0.40738 1 3308 3308 0.79363 0 1 55713 10475 34987 35005 63994 63994 -0.03396277151159666 YFQPYLLF 8 Unmodified _YFQPYLLF_ 0 0 0 REV__Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|56|1|anti-sense REV__Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_2 6 545.7821044921875 2 545.784036 1089.55352 NaN NaN NaN NaN NaN NaN NaN 54.518 1 58.1 57.6 58.6 3.5817 0 0 0 0.39408 1 11531 11531 10.183 0 1 + 55714 32624 34988 35006 63995 63995 0.012324300796990428 YFQQFRLM 8 Unmodified _YFQQFRLM_ 0 0 0 REV__Charlie1a_dup4221|chr12:62346072-62346541:-|1.2824374332294577|0.034363933036494|5.22|151.0|24|2|anti-sense REV__Charlie1a_dup4221|chr12:62346072-62346541:-|1.2824374332294577|0.034363933036494|5.22|151.0|24|2|anti-sense MSMS UPN48_class_I_Rep_2 6 566.783935546875 2 566.784044 1131.55354 NaN NaN NaN NaN NaN NaN NaN 17.204 1 20.856 20.356 21.356 3.6518 0 0 0 0.40746 1 968 968 0.69038 0 1 + 55715 17328 34989 35007 63996 63996 -0.006978931919547904 YFQQPKDEI 9 Unmodified _YFQQPKDEI_ 0 0 0 REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9 REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9 MULTI-MSMS UPN48_class_I_Rep_1 5 584.7901000976562 2 584.287671 1166.56079 0.54031 0.0003157 -0.030075 -1.7572E-05 0.51024 0.00029813 584.2876088876536 58.807 1.1016 62.294 61.875 62.977 3.487 247 69 5 0 0 0 0.37599 1 13046 13046 9.3831 2.0939 1 3861500 + 55716 19994 34990 35008 63997 63997 -0.015828821105287716 YFQYVWLW 8 Unmodified _YFQYVWLW_ 0 0 0 REV__L1MEc_dup15538|chr15:30762871-30764437:+|1.891233918549052|0.0838244805035903|4.5|151.0|75|1|anti-sense REV__L1MEc_dup15538|chr15:30762871-30764437:+|1.891233918549052|0.0838244805035903|4.5|151.0|75|1|anti-sense MSMS UPN48_class_I_Rep_3 7 602.7937622070312 2 602.794935 1203.57532 NaN NaN NaN NaN NaN NaN NaN 115.31 1 118.95 118.45 119.45 3.6433 0 0 0 0.40746 1 27431 27431 0.69038 0.088878 1 + 55717 28391 34991 35009 63998 63998 -0.018327651717299887 YFRFFFFFWFY 11 Unmodified _YFRFFFFFWFY_ 0 0 0 L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|90|3|anti-sense L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|90|3|anti-sense L1MD1_dup3868|chrX:44896377-44897571:-|2.076483771169484|0.0184894144471711|6.81|151.0|90|3|anti-sense MSMS UPN46_class_I_Rep_3 1 572.9405517578125 3 572.939458 1715.79654 NaN NaN NaN NaN NaN NaN NaN 36.821 1 36.821 36.321 37.321 0 0 0 0 0.38417 1 6867 6867 0 0 1 55718 11939 34992 35010 63999 63999 -0.03272325195257508 YFRFIGRV 8 Unmodified _YFRFIGRV_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|410|3|anti-sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|410|3|anti-sense MSMS UPN48_class_I_Rep_3 7 529.2991333007812 2 529.300719 1056.58688 NaN NaN NaN NaN NaN NaN NaN 25.665 1 29.434 28.934 29.934 3.769 0 0 0 0.40738 1 3156 3156 0.79363 0 1 + 55719 25854 34993 35011 64000 64000 0.06085476642260801 YFRKFLLF 8 Unmodified _YFRKFLLF_ 0 0 0 REV__Tigger3b_dup3165|chr8:27394289-27395390:-|1.7655650676628176|0.0123806433084045|7.16|151.0|69|2|anti-sense REV__Tigger3b_dup3165|chr8:27394289-27395390:-|1.7655650676628176|0.0123806433084045|7.16|151.0|69|2|anti-sense MSMS UPN46_class_I_Rep_3 1 567.3309326171875 2 567.328945 1132.64334 NaN NaN NaN NaN NaN NaN NaN 89.041 1 89.041 88.541 89.541 0 0 0 0 0.40738 1 21408 21408 0.79363 0 1 + 55720 32741 34994 35012 64001 64001 0.08232104478929614 YFRKFYMC 8 Unmodified _YFRKFYMC_ 0 0 0 REV__ENST00000505230.1_1_5:86705105-86708611:-|nuORF REV__ENST00000505230.1_1_5:86705105-86708611:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 579.7691650390625 2 579.267173 1156.51979 0.47343 0.00027424 0.80895 0.0004686 1.2824 0.00074284 579.2676345173437 77.271 0.5765 80.883 80.647 81.224 3.6116 104 56 2 0 0 0 0.82752 1 18234 18234 5.7604 0 1 144940 + 55721 19100 34995 35013 64002 64002 -0.052206379553354054 YFRKFYMC 8 Unmodified _YFRKFYMC_ 0 0 0 REV__ENST00000505230.1_1_5:86705105-86708611:-|nuORF REV__ENST00000505230.1_1_5:86705105-86708611:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 579.7691650390625 2 579.267173 1156.51979 0.47343 0.00027424 0.80895 0.0004686 1.2824 0.00074284 579.2676345173437 77.271 0.5765 80.883 80.647 81.224 3.6116 104 56 2 0 0 0 0.72333 1 18234 18234 5.7604 0 1 144940 + 55722 19100 34995 35013 64003 64003 -0.052206379553354054 YFRKFYMC 8 Unmodified _YFRKFYMC_ 0 0 0 REV__ENST00000505230.1_1_5:86705105-86708611:-|nuORF REV__ENST00000505230.1_1_5:86705105-86708611:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 579.2673950195312 2 579.267173 1156.51979 0.52775 0.00030571 0.74147 0.00042951 1.2692 0.00073522 579.2675647684487 77.265 0.6122 80.866 80.602 81.215 3.6016 93 52 3 0 0 0 0.82752 1 18187 18187 5.7604 0 1 151590 + 55723 19100 34995 35013 64004 64004 -0.052206379553354054 YFRLELYK 8 Unmodified _YFRLELYK_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MULTI-SECPEP UPN48_class_I_Rep_2 6 565.7608642578125 2 566.313492 1130.61243 0.51761 0.00029313 -0.6879 -0.00038956 -0.17028 -9.6433E-05 566.3130001893153 65.379 0.12473 68.858 68.795 68.92 3.4792 10 8 2 0 0 0 0.72333 1 14849 14849 0.79363 0 1 45351 + 55724 18540 34996 35014 64005 64005 0.05234906374039383 YFRMRFAF 8 Unmodified _YFRMRFAF_ 0 0 0 REV__nc|ENSG00000125505|Q96N66-3|MBOAT7 REV__nc|ENSG00000125505|Q96N66-3|MBOAT7 MSMS UPN48_class_I_Rep_3 7 569.2889404296875 2 569.286754 1136.55896 NaN NaN NaN NaN NaN NaN NaN 30.224 1 33.939 33.439 34.439 3.7146 0 0 0 0.40738 1 4332 4332 0.79363 0 1 + 55725 18831 34997 35015 64006 64006 -0.0038616960946455947 YFRNKFGK 8 Unmodified _YFRNKFGK_ 0 0 0 ENST00000421138.6_1_12:21644640-21652541:-|nuORF ENST00000421138.6_1_12:21644640-21652541:-|nuORF ENST00000421138.6_1_12:21644640-21652541:-|nuORF MSMS UPN46_class_I_Rep_3 1 530.2897338867188 2 530.290351 1058.56615 NaN NaN NaN NaN NaN NaN NaN 115.89 1 115.89 115.39 116.39 0 0 0 0 0.40746 1 28670 28670 0.69038 0 1 55726 6682 34998 35016 64007 64007 0.03920886262608292 YFRVSAQN 8 Unmodified _YFRVSAQN_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN47_class_I_Rep_3 4 492.7506103515625 2 492.748516 983.482479 NaN NaN NaN NaN NaN NaN NaN 40.26 1 43.497 42.997 43.997 3.2372 0 0 0 0.39819 1 8045 8045 8.5933 2.2392 1 55727 3707 34999 35017 64008 64008 -0.009922699051003292 YFRVSAQN 8 Unmodified _YFRVSAQN_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN47_class_I_Rep_3 4 492.2786560058594 2 492.748516 983.482479 NaN NaN NaN NaN NaN NaN NaN 40.28 1 43.517 43.017 44.017 3.2372 0 0 0 0.40404 1 8051 8051 5.2307 2.3415 1 55728 3707 34999 35017 64009 64009 -0.009922699051003292 YFRYLSEV 8 Unmodified _YFRYLSEV_ 0 0 0 ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000166913|ENST00000353703|YWHAB ENST00000479421.5_2_20:43531717-43535076:+|nuORF ENST00000479421.5_2_20:43531717-43535076:+|nuORF MSMS UPN47_class_I_Rep_3 4 538.7902221679688 2 538.7742 1075.53385 NaN NaN NaN NaN NaN NaN NaN 55.536 1 58.713 58.213 59.213 3.1779 0 0 0 0.38667 1 12699 12699 13.042 0.51092 1 55729 4274 35000 35018 64010 64010 -0.0008994593106308457 YFSCIVPHPF 10 Unmodified _YFSCIVPHPF_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 605.2915649414062 2 605.291702 1208.56885 0.5073 0.00030706 -0.43248 -0.00026178 0.074817 4.5286E-05 605.2913423524112 59 0.64907 62.523 62.176 62.825 3.5231 86 43 3 0 0 0 0.54078 1 12840 12840 6.7232 0.99131 1 203190 + 55730 31195 35001 35019 64011 64011 -0.02709026394745706 YFSCIVPHPF 10 Unmodified _YFSCIVPHPF_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 605.291702 1208.56885 0.5568 0.00033703 -0.63614 -0.00038505 -0.079341 -4.8025E-05 605.2912100188239 59.233 0.61472 62.714 62.31 62.925 3.4801 0.078273 -0.00015876 NaN 6.7232 66 38 2 NaN NaN NaN NaN 0 NaN NaN 0 181080 + 55731 31195 35001 35019 -0.02709026394745706 YFSCIVPHPF 10 Unmodified _YFSCIVPHPF_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 605.291702 1208.56885 0.57194 0.00034619 -0.5298 -0.00032068 0.042143 2.5509E-05 605.2912454801016 59.171 0.57641 62.669 62.322 62.899 3.4987 0.033978 -3.0022E-05 NaN 6.7232 69 38 2 NaN NaN NaN NaN 0 NaN NaN 0 236900 + 55732 31195 35001 35019 -0.02709026394745706 YFSCIVPHPF 10 Unmodified _YFSCIVPHPF_ 0 0 0 REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense REV__MER21B_dup1402|chr9:96906229-96907017:-|1.8459326690424012|0.2223291812699115|3.05|151.0|38|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 605.291702 1208.56885 0.5073 0.00030706 -0.43248 -0.00026178 0.074817 4.5286E-05 605.2913423524112 59 0.64907 62.523 62.176 62.825 3.5231 -0.11225 8.7792E-05 NaN 6.7232 86 43 3 NaN NaN NaN NaN 0 NaN NaN 0 203190 + 55733 31195 35001 35019 -0.02709026394745706 YFSDYFYP 8 Unmodified _YFSDYFYP_ 0 0 0 REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|58|3|anti-sense REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 551.2825927734375 2 551.231833 1100.44911 0.37437 0.00020637 0.034461 1.8996E-05 0.40883 0.00022536 551.23196764682 55.175 0.44863 58.654 58.512 58.961 3.4785 41 26 2 0 0 0 0.72333 1 12501 12501 9.3474 0 1 72381 + 55734 27363 35002 35020 64012 64012 -0.09709316467660756 YFSDYFYP 8 Unmodified _YFSDYFYP_ 0 0 0 REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|58|3|anti-sense REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 551.2826538085938 2 551.231833 1100.44911 0.5061 0.00027898 0.043019 2.3714E-05 0.54912 0.00030269 551.2317315420001 55.457 0.35398 58.767 58.551 58.905 3.3102 33 20 2 0 0 0 0.72333 1 12604 12604 20.871 0.41758 1 73527 + 55735 27363 35002 35020 64013 64013 -0.09709316467660756 YFSDYFYP 8 Unmodified _YFSDYFYP_ 0 0 0 REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|58|3|anti-sense REV__L1MD1_dup5782|chr16:47211005-47211925:-|1.8521334018530085|0.035554419454172|5.7|151.0|58|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 551.2825317382812 2 551.231833 1100.44911 0.41418 0.00022831 -0.44116 -0.00024318 -0.026983 -1.4874E-05 551.2316308619062 55.515 0.61095 58.693 58.524 59.134 3.1779 45 37 2 0 0 0 0.72333 1 12698 12698 14.582 0 1 80023 + 55736 27363 35002 35020 64014 64014 -0.09709316467660756 YFSEKIFLA 9 Unmodified _YFSEKIFLA_ 0 0 0 REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|79|1|anti-sense REV__L1MA4A_dup5538|chr16:47417321-47419035:-|2.94337907521564|0.0408507398189109|6.17|151.0|79|1|anti-sense MSMS UPN46_class_I_Rep_3 1 559.2987060546875 2 559.30005 1116.58555 NaN NaN NaN NaN NaN NaN NaN 76.723 1 76.723 76.223 77.223 0 0 0 0 0.4007 1 17914 17914 0.52476 0 1 + 55737 25332 35003 35021 64015 64015 0.03191797762860915 YFSPWPGGGG 10 Unmodified _YFSPWPGGGG_ 0 0 0 REV__HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|101|3|anti-sense REV__HAL1_dup17110|chr12:116244982-116246530:+|2.217568582492505|0.0098216742896974|7.82|151.0|101|3|anti-sense MSMS UPN48_class_I_Rep_2 6 512.3299560546875 2 512.729792 1023.44503 NaN NaN NaN NaN NaN NaN NaN 24.731 1 28.367 27.867 28.867 3.6363 0 0 0 0.53105 1 2910 2910 0 0 1 + 55738 23372 35004 35022 64016 64016 -0.06575361170700944 YFSSHLIPNV 10 Unmodified _YFSSHLIPNV_ 0 0 0 HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|83|2|anti-sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|83|2|anti-sense HAL1ME_dup1028|chr2:138527026-138528581:-|1.907039055091068|0.0139956169530719|7.09|151.0|83|2|anti-sense MSMS UPN47_class_I_Rep_2 3 588.805419921875 2 588.806031 1175.59751 NaN NaN NaN NaN NaN NaN NaN 72.536 1 75.833 75.333 76.333 3.2971 0 0 0 0.53105 1 17785 17785 3.2813 0 1 55739 7954 35005 35023 64017 64017 0.01673414506035442 YFTLLSFHI 9 Unmodified _YFTLLSFHI_ 0 0 0 REV__MLT1A0-int_dup200|chr3:142000544-142001855:-|2.711634354267814|0.0633176357742503|5.42|151.0|52|1|anti-sense REV__MLT1A0-int_dup200|chr3:142000544-142001855:-|2.711634354267814|0.0633176357742503|5.42|151.0|52|1|anti-sense MSMS UPN48_class_I_Rep_3 7 570.807373046875 2 570.808042 1139.60153 NaN NaN NaN NaN NaN NaN NaN 34.217 1 37.897 37.397 38.397 3.6797 0 0 0 0.39518 1 5411 5411 1.8442 0 1 + 55740 31587 35006 35024 64018 64018 0.03731503999733832 YFTLTRLL 8 Unmodified _YFTLTRLL_ 0 0 0 chr17:28621498-28623205|115|10.5|0.39|4.76|-|0|TE_info:MIRc,MIRc_dup87964,MIR,SINE,donor,-,28623205,28623368|BLTP2,None|7 chr17:28621498-28623205|115|10.5|0.39|4.76|-|0|TE_info:MIRc,MIRc_dup87964,MIR,SINE,donor,-,28623205,28623368|BLTP2,None|7 chr17:28621498-28623205|115|10.5|0.39|4.76|-|0|TE_info:MIRc,MIRc_dup87964,MIR,SINE,donor,-,28623205,28623368|BLTP2,None|7 MULTI-SECPEP UPN47_class_I_Rep_2 3 513.2868041992188 2 513.80276 1025.59097 0.038472 1.9767E-05 1.2487 0.0006416 1.2872 0.00066137 513.8034834804854 66.76 0.10294 70.019 69.972 70.074 3.2588 9 6 2 0 0 0 0.72333 1 16068 16068 0.79363 0 1 38620 55741 592 35007 35025 64019 64019 0.0791952134532039 YFTRWYKA 8 Unmodified _YFTRWYKA_ 0 0 0 ENST00000510179.1_1_13:46844256-46844595:+|nuORF ENST00000510179.1_1_13:46844256-46844595:+|nuORF ENST00000510179.1_1_13:46844256-46844595:+|nuORF MSMS UPN48_class_I_Rep_3 7 567.7900390625 2 567.790184 1133.56581 NaN NaN NaN NaN NaN NaN NaN 33.205 1 36.895 36.395 37.395 3.6896 0 0 0 0.40625 1 5133 5133 2.3027 0 1 55742 7178 35008 35026 64020 64020 0.004374665427576474 YFVFIFFW 8 Unmodified _YFVFIFFW_ 0 0 0 REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|121|3|anti-sense REV__L1PB1_dup12340|chr19:24135836-24138161:-|1.625954871741507|0.1232868207421869|3.72|151.0|121|3|anti-sense MSMS UPN47_class_I_Rep_3 4 584.7960815429688 2 584.796946 1167.57934 NaN NaN NaN NaN NaN NaN NaN 57.206 1 60.374 59.874 60.874 3.1681 0 0 0 0.40738 1 13202 13202 0.79363 0 1 + 55743 30334 35009 35027 64021 64021 0.0022532432199113828 YFVHVYIW 8 Unmodified _YFVHVYIW_ 0 0 0 L1M5_dup28556|chr9:34195109-34195572:-|1.400772795975445|0.0151487296948378|6.53|151.0|27|1|anti-sense L1M5_dup28556|chr9:34195109-34195572:-|1.400772795975445|0.0151487296948378|6.53|151.0|27|1|anti-sense L1M5_dup28556|chr9:34195109-34195572:-|1.400772795975445|0.0151487296948378|6.53|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_2 6 563.7913208007812 2 563.789653 1125.56475 NaN NaN NaN NaN NaN NaN NaN 51.165 1 54.833 54.333 55.333 3.6679 0 0 0 0.40581 1 10519 10519 2.8892 0 1 55744 9135 35010 35028 64022 64022 0.006992521738538926 YFVILVKP 8 Unmodified _YFVILVKP_ 0 0 0 REV__L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|216|3|anti-sense REV__L1PB1_dup7078|chr9:41136319-41139544:-|7.128521549411977|0.2865242256621349|4.64|151.0|216|3|anti-sense MSMS UPN46_class_I_Rep_3 1 489.8065490722656 2 489.804771 977.59499 NaN NaN NaN NaN NaN NaN NaN 66.296 1 66.296 65.796 66.796 0 0 0 0 0.40738 1 15035 15035 0.79363 0 1 + 55745 30483 35011 35029 64023 64023 0.105296108390462 YFVLVPGRI 9 Unmodified _YFVLVPGRI_ 0 0 0 REV__L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|208|1|anti-sense REV__L1PA7_dup1896|chr2:232031502-232037991:-|1.145017316446204|0.0349763599901996|5.03|151.0|208|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 531.8168334960938 2 532.318577 1062.6226 0.33354 0.00017755 0.015833 8.428E-06 0.34937 0.00018598 532.3182232732629 84.26 0.068413 84.26 84.238 84.306 0 7 4 2 0 0 0 0.12444 1 20045 20045 2.0598 0 1 63493 + 55746 30035 35012 35030 64024 64024 0.0937951409928246 YFVPFYGC 8 Unmodified _YFVPFYGC_ 0 0 0 L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|114|1|anti-sense L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|114|1|anti-sense L1PB1_dup3360|chr4:106007517-106010766:-|1.0655789459652438|0.25969787211561|2.04|151.0|114|1|anti-sense MSMS UPN47_class_I_Rep_3 4 498.2209777832031 2 498.220214 994.425876 NaN NaN NaN NaN NaN NaN NaN 36.819 1 40.066 39.566 40.566 3.247 0 0 0 0.40738 1 6987 6987 0.79363 0 1 55747 15088 35013 35031 64025 64025 -0.07156033785986438 YFVPFYLY 8 Unmodified _YFVPFYLY_ 0 0 0 L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|65|2|anti-sense L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|65|2|anti-sense L1MB7_dup22704|chr22:42055475-42056708:-|2.462763882726054|0.2869508116278045|3.1|151.0|65|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 556.2791137695312 2 556.278586 1110.54262 -0.027228 -1.5146E-05 1.2536 0.00069738 1.2264 0.00068223 556.2792226399233 34.799 0.56809 38.485 38.195 38.763 3.6859 57 46 2 0 0 0 0.82752 1 6258 6258 11.114 0 1 135870 55748 10809 35014 35032 64026 64026 -0.008229722945543472 YFVPLSFGPD 10 Unmodified _YFVPLSFGPD_ 0 0 0 REV__L1PA5_dup1511|chr2:201299946-201306098:+|1.2637681584579643|0.0787865753488418|4.0|151.0|278|2|anti-sense REV__L1PA5_dup1511|chr2:201299946-201306098:+|1.2637681584579643|0.0787865753488418|4.0|151.0|278|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 570.8034057617188 2 571.281857 1140.54916 0.076522 4.3716E-05 -0.29415 -0.00016804 -0.21763 -0.00012433 571.2816115113974 44.934 0.56644 48.634 48.404 48.971 3.6999 62 36 2 0 0 0 0.84575 1 9343 9343 7.2892 1.0834 1 102030 + 55749 29718 35015 35033 64027 64027 -0.015490791338379495 YFVPLSFGPD 10 Unmodified _YFVPLSFGPD_ 0 0 0 REV__L1PA5_dup1511|chr2:201299946-201306098:+|1.2637681584579643|0.0787865753488418|4.0|151.0|278|2|anti-sense REV__L1PA5_dup1511|chr2:201299946-201306098:+|1.2637681584579643|0.0787865753488418|4.0|151.0|278|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 571.281857 1140.54916 0.21982 0.00012558 -0.67515 -0.0003857 -0.45533 -0.00026012 571.2813273240906 45.194 0.65866 48.547 48.36 49.019 3.3534 -0.057451 -0.00012942 NaN 7.2892 59 37 2 NaN NaN NaN NaN 0 NaN NaN 0 106860 + 55750 29718 35015 35033 -0.015490791338379495 YFVPLSFGPD 10 Unmodified _YFVPLSFGPD_ 0 0 0 REV__L1PA5_dup1511|chr2:201299946-201306098:+|1.2637681584579643|0.0787865753488418|4.0|151.0|278|2|anti-sense REV__L1PA5_dup1511|chr2:201299946-201306098:+|1.2637681584579643|0.0787865753488418|4.0|151.0|278|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 571.281857 1140.54916 0.24059 0.00013745 -0.63841 -0.00036471 -0.39782 -0.00022727 571.281344057439 45.388 0.61543 48.633 48.347 48.963 3.2441 0.027813 -8.7448E-05 NaN 7.2892 66 37 3 NaN NaN NaN NaN 0 NaN NaN 0 130910 + 55751 29718 35015 35033 -0.015490791338379495 YFVSIHFP 8 Unmodified _YFVSIHFP_ 0 0 0 REV__L1MC4_dup6035|chr4:39964115-39964419:+|1.1575833761581302|0.0019805540373906|9.19|150.0|21|3|anti-sense REV__L1MC4_dup6035|chr4:39964115-39964419:+|1.1575833761581302|0.0019805540373906|9.19|150.0|21|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 505.76287841796875 2 505.260728 1008.5069 0.15644 7.9043E-05 0.30516 0.00015418 0.4616 0.00023323 505.7624030970022 59.239 0.63699 62.404 62.114 62.751 3.1654 62 40 2 0 0 0 0.72333 1 13775 13775 2.3027 0 1 84779 + 55752 26933 35016 35034 64028 64028 0.0029899024842734434 YFVSIHFP 8 Unmodified _YFVSIHFP_ 0 0 0 REV__L1MC4_dup6035|chr4:39964115-39964419:+|1.1575833761581302|0.0019805540373906|9.19|150.0|21|3|anti-sense REV__L1MC4_dup6035|chr4:39964115-39964419:+|1.1575833761581302|0.0019805540373906|9.19|150.0|21|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 505.260728 1008.5069 0.22573 0.00011405 -0.071892 -3.6324E-05 0.15384 7.773E-05 505.26067458008566 58.821 0.65126 62.239 61.93 62.582 3.4171 -0.11221 -0.00020741 NaN 13.508 60 42 2 NaN NaN NaN NaN 0 NaN NaN 0 86574 + 55753 26933 35016 35034 0.0029899024842734434 YFVSIHFP 8 Unmodified _YFVSIHFP_ 0 0 0 REV__L1MC4_dup6035|chr4:39964115-39964419:+|1.1575833761581302|0.0019805540373906|9.19|150.0|21|3|anti-sense REV__L1MC4_dup6035|chr4:39964115-39964419:+|1.1575833761581302|0.0019805540373906|9.19|150.0|21|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 505.260728 1008.5069 0.24777 0.00012519 0.15304 7.7325E-05 0.40081 0.00020251 505.26073189332465 59.128 0.66242 62.409 62.101 62.763 3.2818 0.058533 1.9894E-05 NaN 13.508 71 44 2 NaN NaN NaN NaN 0 NaN NaN 0 77640 + 55754 26933 35016 35034 0.0029899024842734434 YFVSPLPRL 9 Unmodified _YFVSPLPRL_ 0 0 0 REV__nc|ENSG00000168229|Q13258-2|PTGDR REV__nc|ENSG00000168229|Q13258-2|PTGDR MSMS UPN48_class_I_Rep_3 7 546.3147583007812 2 546.316035 1090.61752 NaN NaN NaN NaN NaN NaN NaN 55.255 1 58.81 58.31 59.31 3.5554 0 0 0 0.2088 1 11695 11695 15.847 1.9411 1 + 55755 20262 35017 35035 64029 64029 0.07583210236657578 YFVTDEPD 8 Unmodified _YFVTDEPD_ 0 0 0 REV__nc|ENSG00000112769|Q16363-2|LAMA4 REV__nc|ENSG00000112769|Q16363-2|LAMA4 MSMS UPN47_class_I_Rep_1 2 493.2096862792969 2 493.211098 984.407643 NaN NaN NaN NaN NaN NaN NaN 116.29 1 119.9 119.4 120.4 3.6036 0 0 0 0.40404 1 28795 28795 5.2307 0 1 + 55756 18489 35018 35036 64030 64030 -0.08518497226998534 YFVYFLFQ 8 Unmodified _YFVYFLFQ_ 0 0 0 L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|97|3|anti-sense L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|97|3|anti-sense L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|97|3|anti-sense MSMS UPN47_class_I_Rep_2 3 563.7827758789062 2 563.784036 1125.55352 NaN NaN NaN NaN NaN NaN NaN 83.465 1 86.876 86.376 87.376 3.4116 0 0 0 0.40738 1 20806 20806 0.79363 0 1 55757 11631 35019 35037 64031 64031 -0.004235699203036347 YFWEESLQL 9 Unmodified _YFWEESLQL_ 0 0 0 REV__nc|ENSG00000131238|P50897-2|PPT1 REV__nc|ENSG00000131238|P50897-2|PPT1 MSMS UPN48_class_I_Rep_1 5 607.7883911132812 2 607.790047 1213.56554 NaN NaN NaN NaN NaN NaN NaN 57.852 1 61.347 60.847 61.847 3.4942 0 0 0 0.3377 1 12570 12570 8.7454 2.0222 1 + 55758 18969 35020 35038 64032 64032 -0.03269997967754534 YFWFFFFC 8 Unmodified _YFWFFFFC_ 0 0 0 REV__L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|90|1|anti-sense REV__L1PA17_dup870|chr3:125265884-125268697:+|5.418569209527056|0.0730513859760161|6.21|151.0|90|1|anti-sense MSMS UPN47_class_I_Rep_2 3 603.7611694335938 2 603.759507 1205.50446 NaN NaN NaN NaN NaN NaN NaN 115.01 1 118.51 118.01 119.01 3.5039 0 0 0 0.40738 1 28027 28027 0.79363 0 1 + 55759 29479 35021 35039 64033 64033 -0.09007181480887994 YFWFFGLY 8 Unmodified _YFWFFGLY_ 0 0 0 REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|149|3|anti-sense REV__L1MA4A_dup955|chr2:240486884-240489175:-|5.5766597475280975|0.2616757856210267|4.41|151.0|149|3|anti-sense MSMS UPN47_class_I_Rep_2 3 571.7705078125 2 571.770929 1141.5273 NaN NaN NaN NaN NaN NaN NaN 67.909 1 71.178 70.678 71.678 3.2687 0 0 0 0.4032 1 16402 16402 6.3541 0 1 + 55760 25349 35022 35040 64034 64034 -0.03779839091748727 YFWHHKVF 8 Unmodified _YFWHHKVF_ 0 0 0 L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|54|2|anti-sense L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|54|2|anti-sense L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|54|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 582.79443359375 2 582.292894 1162.57123 0.43739 0.00025469 -1.4102 -0.00082117 -0.97285 -0.00056648 582.292006165366 77.398 0.21098 80.92 80.832 81.043 3.5221 30 19 2 0 0 0 0.82752 1 18434 18434 9.3474 1.4373 1 306140 55761 11571 35023 35041 64035 64035 -0.003548098747842232 YFWHHKVF 8 Unmodified _YFWHHKVF_ 0 0 0 L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|54|2|anti-sense L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|54|2|anti-sense L1MC4a_dup3953|chr6:136575463-136576312:-|4.005501413920111|0.3470990962255447|3.53|151.0|54|2|anti-sense MSMS UPN48_class_I_Rep_1 5 582.2925415039062 2 582.292894 1162.57123 NaN NaN NaN NaN NaN NaN NaN 77.112 1 80.622 80.122 81.122 3.5102 0 0 0 0.40404 1 18335 18335 5.2307 0 1 55762 11571 35023 35041 64036 64036 -0.003548098747842232 YFWLLYLCP 9 Unmodified _YFWLLYLCP_ 0 0 0 REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|160|1|anti-sense REV__L1PA7_dup2609|chr3:152367043-152371316:-|7.691736728773595|0.1475134803786841|5.7|151.0|160|1|anti-sense MSMS UPN47_class_I_Rep_2 3 406.5385437011719 3 406.540306 1216.59909 NaN NaN NaN NaN NaN NaN NaN 24.798 1 28.281 27.781 28.781 3.483 0 0 0 0.3979 1 3345 3345 1.1933 0 1 + 55763 30051 35024 35042 64037 64037 -0.000546677295687914 YFWLRIIL 8 Unmodified _YFWLRIIL_ 0 0 0 L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|343|3|anti-sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|343|3|anti-sense L1PA5_dup3521|chr5:37522505-37528637:+|7.790251419423197|0.1334211900776871|5.87|151.0|343|3|anti-sense MSMS UPN46_class_I_Rep_3 1 562.3347778320312 2 562.33677 1122.65899 NaN NaN NaN NaN NaN NaN NaN 38.809 1 38.809 38.309 39.309 0 0 0 0 0.40738 1 7416 7416 0.79363 0 1 55764 14462 35025 35043 64038 64038 0.10256390995982656 YFWRIAWRFWR 11 Unmodified _YFWRIAWRFWR_ 0 0 0 ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF MSMS UPN46_class_I_Rep_3 1 562.9638671875 3 562.965 1685.87317 NaN NaN NaN NaN NaN NaN NaN 104.67 1 104.67 104.17 105.17 0 0 0 0 0.38417 1 25548 25548 0 0 1 55765 6672 35026 35044 64039 64039 0.057669111445648014 YFWRNSTD 8 Unmodified _YFWRNSTD_ 0 0 0 REV__MLT1L_dup7380|chr10:75571514-75571819:+|1.5136158055940852|0.0071612042116359|7.72|148.0|2|1|sense REV__MLT1L_dup7380|chr10:75571514-75571819:+|1.5136158055940852|0.0071612042116359|7.72|148.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 544.7437133789062 2 544.743431 1087.47231 NaN NaN NaN NaN NaN NaN NaN 27.321 1 31.088 30.588 31.588 3.7662 0 0 0 0.40625 1 4045 4045 2.3027 0 1 + 55766 31802 35027 35045 64040 64040 -0.06792877630323346 YFWVHFLLC 9 Unmodified _YFWVHFLLC_ 0 0 0 REV__L1MA2_dup2696|chr6:127307676-127309480:+|1.6538969017952727|0.0568799079638731|4.86|151.0|117|3|anti-sense REV__L1MA2_dup2696|chr6:127307676-127309480:+|1.6538969017952727|0.0568799079638731|4.86|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_1 2 613.8558959960938 2 614.304613 1226.59467 NaN NaN NaN NaN NaN NaN NaN 71.668 1 75.043 74.543 75.543 3.3751 0 0 0 0.40038 1 17488 17488 0.6015 0 1 + 55767 24844 35028 35046 64041 64041 -0.009561321524643063 YFYAIYHI 8 Unmodified _YFYAIYHI_ 0 0 0 L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|293|3|anti-sense L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|293|3|anti-sense L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|293|3|anti-sense MSMS UPN48_class_I_Rep_2 6 545.2760620117188 2 545.273835 1088.53312 NaN NaN NaN NaN NaN NaN NaN 55.353 1 58.909 58.409 59.409 3.5559 0 0 0 0.39167 1 11789 11789 11.114 0.93107 1 55768 10242 35029 35047 64042 64042 -0.007607405801309142 YFYCCPILI 9 Unmodified _YFYCCPILI_ 0 0 0 REV__L1M4_dup7779|chr7:66707702-66708274:-|2.058670712701168|0.4672504468018712|2.14|151.0|43|3|anti-sense REV__L1M4_dup7779|chr7:66707702-66708274:-|2.058670712701168|0.4672504468018712|2.14|151.0|43|3|anti-sense MSMS UPN47_class_I_Rep_1 2 568.208740234375 2 567.771757 1133.52896 NaN NaN NaN NaN NaN NaN NaN 118.69 1 122.3 121.8 122.8 3.6036 0 0 0 0.40038 1 29463 29463 0.6015 0 1 + 55769 24447 35030 35048 64043 64043 -0.03246289389676349 YFYCVFSML 9 Unmodified _YFYCVFSML_ 0 0 0 Tigger3a_dup728|chr2:151451121-151451463:+|1.3681699101284366|0.0259526041882115|5.72|151.0|1|1|sense Tigger3a_dup728|chr2:151451121-151451463:+|1.3681699101284366|0.0259526041882115|5.72|151.0|1|1|sense Tigger3a_dup728|chr2:151451121-151451463:+|1.3681699101284366|0.0259526041882115|5.72|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 586.7625732421875 2 586.761389 1171.50822 NaN NaN NaN NaN NaN NaN NaN 17.585 1 21.111 20.611 21.611 3.5261 0 0 0 0.40038 1 1045 1045 0.6015 0 1 55770 33365 35031 35049 64044 64044 -0.07066879769331535 YFYFHLYF 8 Unmodified _YFYFHLYF_ 0 0 0 REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|117|1|anti-sense REV__L1MA6_dup4712|chr15:48706243-48709217:-|1.4015976984290426|0.1566203648718123|3.16|151.0|117|1|anti-sense MSMS UPN47_class_I_Rep_1 2 600.2806396484375 2 600.28166 1198.54877 NaN NaN NaN NaN NaN NaN NaN 55.329 1 58.808 58.308 59.308 3.4785 0 0 0 0.40738 1 12550 12550 0.79363 0 1 + 55771 25467 35032 35050 64045 64045 -0.04256454063056481 YFYFIFIF 8 Unmodified _YFYFIFIF_ 0 0 0 REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|89|2|anti-sense REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|89|2|anti-sense MSMS UPN48_class_I_Rep_2 6 580.7572631835938 2 580.296779 1158.57901 NaN NaN NaN NaN NaN NaN NaN 69.661 1 73.183 72.683 73.683 3.5216 0 0 0 0.4032 1 16151 16151 6.3541 0 1 + 55772 24247 35033 35051 64046 64046 0.006059046021164249 YFYKCIHTY 9 Unmodified _YFYKCIHTY_ 0 0 0 REV__L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|80|1|anti-sense REV__L1MC3_dup10306|chr14:61371162-61372919:-|1.9602021019502816|0.0261012702098241|6.23|151.0|80|1|anti-sense MSMS UPN48_class_I_Rep_2 6 619.2891845703125 2 619.289159 1236.56377 NaN NaN NaN NaN NaN NaN NaN 58.152 1 61.651 61.151 62.151 3.4987 0 0 0 0.4007 1 12641 12641 0.52476 0 1 + 55773 26702 35034 35052 64047 64047 -0.04505330257370588 YFYLHACLK 9 Unmodified _YFYLHACLK_ 0 0 0 L1P4a_dup427|chr11:87207740-87211125:+|2.2101555993307382|0.0361524618962313|5.93|151.0|140|1|anti-sense L1P4a_dup427|chr11:87207740-87211125:+|2.2101555993307382|0.0361524618962313|5.93|151.0|140|1|anti-sense L1P4a_dup427|chr11:87207740-87211125:+|2.2101555993307382|0.0361524618962313|5.93|151.0|140|1|anti-sense MSMS UPN48_class_I_Rep_1 5 579.741455078125 2 579.294245 1156.57394 NaN NaN NaN NaN NaN NaN NaN 26.841 1 30.404 29.904 30.904 3.5629 0 0 0 0.39428 1 3362 3362 2.0598 0.40713 1 55774 13565 35035 35053 64048 64048 0.0019127746786580246 YFYSGHSFYN 10 Unmodified _YFYSGHSFYN_ 0 0 0 REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|122|3|anti-sense REV__L1MC3_dup8026|chr10:31899204-31900933:+|1.2270383787276182|0.1131371861615698|3.44|150.0|122|3|anti-sense MSMS UPN47_class_I_Rep_1 2 642.7696533203125 2 642.769645 1283.52474 NaN NaN NaN NaN NaN NaN NaN 15.363 1 18.86 18.36 19.36 3.4968 0 0 0 0.53105 1 796 796 0 0 1 + 55775 26776 35036 35054 64049 64049 -0.10568339287351591 YFYSSLEPFR 10 Unmodified _YFYSSLEPFR_ 0 0 0 Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|96|2|anti-sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|96|2|anti-sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|96|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.8788146972656 3 436.880156 1307.61864 0.15058 6.5787E-05 -0.98526 -0.00043044 -0.83468 -0.00036465 436.8792015651487 94.245 0.18002 97.996 97.856 98.036 3.7508 35 23 2 0 0 0 0.56444 1 23407 23407 0.69767 0 1 56130 55776 33176 35037 35055 64050 64050 -0.022866201851002188 YFYSSLEPFR 10 Unmodified _YFYSSLEPFR_ 0 0 0 Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|96|2|anti-sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|96|2|anti-sense Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|96|2|anti-sense MSMS UPN48_class_I_Rep_1 5 436.8793640136719 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 84.449 1 88.046 87.546 88.546 3.5973 0 0 0 0.53105 1 20216 20216 0.69767 0 1 55777 33176 35037 35055 64051 64051 -0.022866201851002188 YFYTRIMLFWW 11 Unmodified _YFYTRIMLFWW_ 0 0 0 L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 406.85833740234375 4 407.204796 1624.79008 0.11401 4.6427E-05 -1.3346 -0.00054345 -1.2206 -0.00049702 407.4551669594133 64.984 0.17277 68.463 68.353 68.526 3.4792 16 12 2 0 0 0 22.551 1 14737 14737 0.094841 0.011491 1 59373 55778 15076 35038 35056 64052 64052 0.002674135816960188 YFYTRIMLFWW 11 Unmodified _YFYTRIMLFWW_ 0 0 0 L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 4 407.204796 1624.79008 -0.03348 -1.3633E-05 -1.5986 -0.00065094 -1.632 -0.00066458 407.2037710488441 64.722 0.073044 68.176 68.128 68.201 3.4541 -0.1491 -0.00046991 NaN 0.094841 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 77397 55779 15076 35038 35056 0.002674135816960188 YFYTRIMLFWW 11 Unmodified _YFYTRIMLFWW_ 0 0 0 L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense L1PB1_dup3052|chr4:53258579-53264247:-|12.013880273137554|0.0740887249690198|7.34|151.0|195|1|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 4 407.204796 1624.79008 0.12739 5.1875E-05 -1.2859 -0.00052364 -1.1585 -0.00047176 407.4550465790276 64.827 0.13571 68.335 68.266 68.402 3.5083 0.01048 3.9314E-05 NaN 0.094841 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 88641 55780 15076 35038 35056 0.002674135816960188 YFYYCFNV 8 Unmodified _YFYYCFNV_ 0 0 0 L1MC2_dup841|chr2:148699165-148702172:-|1.3870749823770083|0.0394802917160646|5.13|151.0|219|3|anti-sense L1MC2_dup841|chr2:148699165-148702172:-|1.3870749823770083|0.0394802917160646|5.13|151.0|219|3|anti-sense L1MC2_dup841|chr2:148699165-148702172:-|1.3870749823770083|0.0394802917160646|5.13|151.0|219|3|anti-sense MSMS UPN48_class_I_Rep_3 7 559.7631225585938 2 559.736228 1117.4579 NaN NaN NaN NaN NaN NaN NaN 21.555 1 25.27 24.77 25.77 3.7144 0 0 0 0.40738 1 2046 2046 0.79363 0 1 55781 11284 35039 35057 64053 64053 -0.09612666102862022 YGACSQVF 8 Unmodified _YGACSQVF_ 0 0 0 REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF MSMS UPN48_class_I_Rep_2 6 437.691162109375 2 437.691821 873.369089 NaN NaN NaN NaN NaN NaN NaN 51.39 1 55.058 54.558 55.558 3.6679 0 0 0 0.40738 1 10589 10589 0.79363 0 1 + 55782 19446 35040 35058 64054 64054 -0.07266081342504549 YGACSQVF 8 Unmodified _YGACSQVF_ 0 0 0 REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF MSMS UPN48_class_I_Rep_3 7 437.69146728515625 2 437.691821 873.369089 NaN NaN NaN NaN NaN NaN NaN 50.964 1 54.574 54.074 55.074 3.6105 0 0 0 0.40738 1 10395 10395 0.79363 0 1 + 55783 19446 35040 35058 64055 64055 -0.07266081342504549 YGADILFKS 9 Unmodified _YGADILFKS_ 0 0 0 REV__L1PA13_dup4514|chr9:5140716-5143663:-|2.2306545194651948|0.0399925417562818|5.8|151.0|112|1|anti-sense REV__L1PA13_dup4514|chr9:5140716-5143663:-|2.2306545194651948|0.0399925417562818|5.8|151.0|112|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 507.2684020996094 2 507.26875 1012.52295 0.22956 0.00011645 -1.8783 -0.00095278 -1.6487 -0.00083633 507.2677796683188 85.836 0.24191 89.442 89.27 89.512 3.6059 34 23 2 0 0 0 0.20317 1 20534 20534 20.415 3.3016 1 218170 + 55784 29102 35041 35059 64056 64056 0.017186516946708252 YGADILFKS 9 Unmodified _YGADILFKS_ 0 0 0 REV__L1PA13_dup4514|chr9:5140716-5143663:-|2.2306545194651948|0.0399925417562818|5.8|151.0|112|1|anti-sense REV__L1PA13_dup4514|chr9:5140716-5143663:-|2.2306545194651948|0.0399925417562818|5.8|151.0|112|1|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 507.26875 1012.52295 0.22956 0.00011645 -1.8783 -0.00095278 -1.6487 -0.00083633 507.2677796683188 85.836 0.24191 89.442 89.27 89.512 3.6059 -0.033834 7.1378E-05 NaN 20.415 34 23 2 NaN NaN NaN NaN 0 NaN NaN 0 218170 + 55785 29102 35041 35059 0.017186516946708252 YGAFSDKLL 9 Unmodified _YGAFSDKLL_ 0 0 0 REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 507.2679138183594 2 507.26875 1012.52295 0.22931 0.00011632 -2.0836 -0.0010569 -1.8543 -0.00094061 507.2676062782438 85.957 0.15017 89.57 89.519 89.669 3.613 24 15 2 0 0 0 0.10629 1 20585 20585 17.113 0 1 132430 + 55786 27063 35042 35060 64057 64057 0.017186516946708252 YGAFSDKLL 9 Unmodified _YGAFSDKLL_ 0 0 0 REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 507.2690124511719 2 507.26875 1012.52295 0.29606 0.00015018 -1.7043 -0.00086453 -1.4082 -0.00071435 507.2679713481427 85.709 0.26781 89.48 89.397 89.664 3.7701 45 29 2 0 0 0 0.32682 1 20322 20322 12.241 0 1 133020 + 55787 27063 35042 35060 64058 64058 0.017186516946708252 YGAFSDKLL 9 Unmodified _YGAFSDKLL_ 0 0 0 REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense MSMS UPN48_class_I_Rep_3 7 507.2674255371094 2 507.26875 1012.52295 NaN NaN NaN NaN NaN NaN NaN 85.883 1 89.653 89.153 90.153 3.7701 0 0 0 0.27207 1 20381 20381 12.241 0 1 + 55788 27063 35042 35060 64059 64059 0.017186516946708252 YGAFSDKLL 9 Unmodified _YGAFSDKLL_ 0 0 0 REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 507.2674255371094 2 507.26875 1012.52295 0.29606 0.00015018 -1.7043 -0.00086453 -1.4082 -0.00071435 507.2679713481427 85.709 0.26781 89.48 89.397 89.664 3.7701 45 29 2 0 0 0 0.11642 1 20381 20381 12.241 0 1 133020 + 55789 27063 35042 35060 64060 64060 0.017186516946708252 YGAFSDKLL 9 Unmodified _YGAFSDKLL_ 0 0 0 REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense REV__L1MC5_dup12676|chr15:90011409-90011924:-|1.182245219742023|0.0946393517624082|3.64|151.0|32|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 507.26875 1012.52295 0.29553 0.00014991 -1.9183 -0.00097311 -1.6228 -0.0008232 507.26787251222805 85.942 0.15752 89.712 89.664 89.822 3.7701 0.071026 8.7277E-05 NaN 17.113 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 71940 + 55790 27063 35042 35060 0.017186516946708252 YGAVASLAFPF 11 Unmodified _YGAVASLAFPF_ 0 0 0 nc|ENSG00000182983|Q6ZS27-3|ZNF662 nc|ENSG00000182983|Q6ZS27-3|ZNF662 nc|ENSG00000182983|Q6ZS27-3|ZNF662 MULTI-MSMS UPN48_class_I_Rep_2 6 571.7975463867188 2 571.797675 1141.5808 0.49388 0.0002824 -0.1391 -7.9534E-05 0.35478 0.00020286 571.7975977740679 67.853 0.58724 71.361 71.141 71.728 3.5083 82 50 2 0 0 0 0.61292 1 15711 15711 4.897 0.56777 1 138840 55791 16770 35043 35061 64061 64061 0.015669136200813227 YGAVKGFK 8 Unmodified _YGAVKGFK_ 0 0 0 REV__L1M1_dup4520|chr9:5160197-5161816:+|2.5863928880582843|0.0369940036392047|6.13|151.0|57|3|sense REV__L1M1_dup4520|chr9:5160197-5161816:+|2.5863928880582843|0.0369940036392047|6.13|151.0|57|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 435.2474670410156 2 435.247621 868.480688 -0.055433 -2.4127E-05 0.49805 0.00021677 0.44262 0.00019265 435.2471280011722 99.777 0.66798 103.38 102.9 103.57 3.6065 177 86 3 0 0 0 0.82752 2 24052 24052;24084 0.79363 0 1 228180 + 55792 24103 35044 35062 64062;64063 64062 0.0411872107695217 YGAVVGLH 8 Unmodified _YGAVVGLH_ 0 0 0 ENSG00000162227|ENST00000294168|TAF6L ENSG00000162227|ENST00000294168|TAF6L ENSG00000162227|ENST00000294168|TAF6L MSMS UPN48_class_I_Rep_1 5 408.5771179199219 2 408.224146 814.433738 NaN NaN NaN NaN NaN NaN NaN 77.59 1 81.112 80.612 81.612 3.5221 0 0 0 0.40738 1 18473 18473 0.79363 0 1 55793 3921 35045 35063 64064 64064 0.019098615258030804 YGCFERGWF 9 Unmodified _YGCFERGWF_ 0 0 0 REV__L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|189|1|anti-sense REV__L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|189|1|anti-sense MSMS UPN47_class_I_Rep_1 2 582.7499389648438 2 582.750201 1163.48585 NaN NaN NaN NaN NaN NaN NaN 116.13 1 119.73 119.23 120.23 3.5943 0 0 0 0.39518 1 28753 28753 1.8442 0 1 + 55794 28974 35046 35064 64065 64065 -0.08935343122743689 YGCLLLNY 8 Unmodified _YGCLLLNY_ 0 0 0 REV__L1P1_dup3049|chr19:24115698-24117843:-|3.157747440470269|0.1906697331782938|4.05|151.0|123|3|anti-sense REV__L1P1_dup3049|chr19:24115698-24117843:-|3.157747440470269|0.1906697331782938|4.05|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 480.2166442871094 2 479.738771 957.462989 NaN NaN NaN NaN NaN NaN NaN 27.218 1 30.984 30.484 31.484 3.7662 0 0 0 0.40738 1 4014 4014 0.79363 0 1 + 55795 28828 35047 35065 64066 64066 -0.01744362240231112 YGCLLLNY 8 Unmodified _YGCLLLNY_ 0 0 0 REV__L1P1_dup3049|chr19:24115698-24117843:-|3.157747440470269|0.1906697331782938|4.05|151.0|123|3|anti-sense REV__L1P1_dup3049|chr19:24115698-24117843:-|3.157747440470269|0.1906697331782938|4.05|151.0|123|3|anti-sense MSMS UPN47_class_I_Rep_1 2 479.73724365234375 2 479.738771 957.462989 NaN NaN NaN NaN NaN NaN NaN 29.937 1 33.682 33.182 34.182 3.7449 0 0 0 0.40738 1 4825 4825 0.79363 0 1 + 55796 28828 35047 35065 64067 64067 -0.01744362240231112 YGCRWKRY 8 Unmodified _YGCRWKRY_ 0 0 0 ENST00000528031.1_1_11:75167699-75188792:-|nuORF;nc|ENSG00000158555|Q8WTR4-2|GDPD5;ENSG00000158555|ENST00000336898|GDPD5 ENST00000528031.1_1_11:75167699-75188792:-|nuORF ENST00000528031.1_1_11:75167699-75188792:-|nuORF MSMS UPN48_class_I_Rep_1 5 566.2794799804688 2 566.27946 1130.54437 NaN NaN NaN NaN NaN NaN NaN 28.448 1 32.005 31.505 32.505 3.5571 0 0 0 0.40738 1 3808 3808 0.79363 0 1 55797 3805 35048 35066 64068 64068 -0.015682417576044827 YGDAECECSM 10 Unmodified _YGDAECECSM_ 0 0 0 REV__ENSG00000131019|ENST00000367339|ULBP3 REV__ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_1 2 554.17626953125 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 117.57 1 121.17 120.67 121.67 3.6036 0 0 0 0.53105 1 29151 29151 0.40072 0.40072 1 + 55798 18964 35049 35067 64069 64069 -0.21343238958888833 YGDAECECSM 10 Unmodified _YGDAECECSM_ 0 0 0 REV__ENSG00000131019|ENST00000367339|ULBP3 REV__ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_2 3 554.1758422851562 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 29.434 1 32.926 32.426 33.426 3.4923 0 0 0 0.53105 1 4713 4713 0.40072 0.40072 1 + 55799 18964 35049 35067 64070 64070 -0.21343238958888833 YGDAECECSM 10 Unmodified _YGDAECECSM_ 0 0 0 REV__ENSG00000131019|ENST00000367339|ULBP3 REV__ENSG00000131019|ENST00000367339|ULBP3 MSMS UPN47_class_I_Rep_3 4 554.1753540039062 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 112.06 1 115.58 115.08 116.08 3.5207 0 0 0 0.53105 1 27516 27516 0.45834 0.45834 1 + 55800 18964 35049 35067 64071 64071 -0.21343238958888833 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF MSMS UPN47_class_I_Rep_3 4 442.8083190917969 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 102.22 1 105.71 105.21 106.21 3.4873 0 0 0 0.40738 1 25143 25143 0.79363 0 1 + 55801 20841 35050 35068 64072 64072 -0.17957700951228617 YGDDILFKF 9 Unmodified _YGDDILFKF_ 0 0 0 REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|203|2|anti-sense REV__L1PA10_dup2776|chr6:156087095-156091566:+|4.405023216800999|0.0166234167823446|8.05|149.0|203|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 558.7825317382812 2 559.281857 1116.54916 0.50554 0.00028274 2.3993 0.0013419 2.9048 0.0016246 559.2831978805042 67.966 0.12622 71.474 71.404 71.53 3.5083 10 8 2 0 0 0 0.11705 1 15647 15647 10.824 3.5347 1 196780 + 55802 28954 35051 35069 64073 64073 -0.004450791338740601 YGDGRPLLRI 10 Unmodified _YGDGRPLLRI_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS UPN47_class_I_Rep_2 3 580.3006591796875 2 580.332747 1158.65094 NaN NaN NaN NaN NaN NaN NaN 109.9 1 113.43 112.93 113.93 3.5307 0 0 0 0.53105 1 26776 26776 1.6526 0.96225 1 + 55803 19439 35052 35070 64074 64074 0.07796212008565817 YGDLKTYFQ 9 Unmodified _YGDLKTYFQ_ 0 0 0 MLT1G_dup474|chr3:18216603-18216879:-|1.1288299223814038|0.0004900619573206|11.17|149.0|1|1|sense MLT1G_dup474|chr3:18216603-18216879:-|1.1288299223814038|0.0004900619573206|11.17|149.0|1|1|sense MLT1G_dup474|chr3:18216603-18216879:-|1.1288299223814038|0.0004900619573206|11.17|149.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 567.7634887695312 2 567.776939 1133.53933 NaN NaN NaN NaN NaN NaN NaN 28.478 1 31.977 31.477 32.477 3.4986 0 0 0 0.39518 1 4424 4424 1.8442 0 1 55804 16406 35053 35071 64075 64075 -0.02210267139230382 YGDRIQLL 8 Unmodified _YGDRIQLL_ 0 0 0 REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|9|1|sense REV__Tigger7_dup102|chr1:93147638-93149869:+|2.5358245812601843|0.1140737013158604|4.47|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 489.2651062011719 2 489.274367 976.53418 NaN NaN NaN NaN NaN NaN NaN 50.191 1 53.417 52.917 53.917 3.2262 0 0 0 0.40472 1 11067 11067 4.3292 0 1 + 55805 32805 35054 35072 64076 64076 0.044974737888196614 YGDSPAPFDDD 11 Unmodified _YGDSPAPFDDD_ 0 0 0 REV__nc|ENSG00000159164|Q7L0J3-2|SV2A REV__nc|ENSG00000159164|Q7L0J3-2|SV2A MSMS UPN47_class_I_Rep_1 2 599.7310791015625 2 599.730383 1197.44621 NaN NaN NaN NaN NaN NaN NaN 114.54 1 118.12 117.62 118.62 3.5809 0 0 0 0.38417 1 28306 28306 1.1933 0.39971 1 + 55806 19862 35055 35073 64077 64077 -0.14461236383135656 YGDTRKEKK 9 Unmodified _YGDTRKEKK_ 0 0 0 REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 562.8065795898438 2 562.806562 1123.59857 0.046619 2.6238E-05 0.15359 8.6443E-05 0.20021 0.00011268 562.8066577239085 28.402 0.61124 31.9 31.695 32.306 3.4986 88 50 2 0 0 0 0.43982 2 4495 4409;4495 5.7319 3.5965 1 83562 + 55807 22645 35056 35074 64078;64079 64079 0.04171628874951239 YGDTRKEKK 9 Unmodified _YGDTRKEKK_ 0 0 0 REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF REV__ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 562.8063354492188 2 562.806562 1123.59857 -0.20602 -0.00011595 0.12971 7.3002E-05 -0.076313 -4.295E-05 562.8066716058081 28.745 0.56718 32.079 31.79 32.357 3.3337 64 47 2 0 0 0 0.47197 1 4544 4544 3.5965 1.2938 1 70601 + 55808 22645 35056 35074 64080 64080 0.04171628874951239 YGELRWCHCT 10 Unmodified _YGELRWCHCT_ 0 0 0 AluSx_dup87964|chr15:64960564-64960865:-|1.1446474181394155|0.2205588624276715|2.38|151.0|2|1|sense AluSx_dup87964|chr15:64960564-64960865:-|1.1446474181394155|0.2205588624276715|2.38|151.0|2|1|sense AluSx_dup87964|chr15:64960564-64960865:-|1.1446474181394155|0.2205588624276715|2.38|151.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 634.27197265625 2 634.270975 1266.5274 NaN NaN NaN NaN NaN NaN NaN 15.727 1 19.093 18.593 19.593 3.3659 0 0 0 0.53105 1 863 863 1.3295 0.5359 1 55809 301 35057 35075 64081 64081 -0.09520530425743345 YGERGKVTSK 10 Unmodified _YGERGKVTSK_ 0 0 0 REV__L1MC4a_dup3977|chr6:144000952-144002204:+|1.2782981505402595|0.0235435390344177|5.76|151.0|72|2|anti-sense REV__L1MC4a_dup3977|chr6:144000952-144002204:+|1.2782981505402595|0.0235435390344177|5.76|151.0|72|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.8062744140625 2 562.806562 1123.59857 -0.06735 -3.7905E-05 0.030542 1.7189E-05 -0.036808 -2.0716E-05 562.8065685720185 28.278 0.58634 32.044 31.767 32.353 3.7662 79 46 2 0 0 0 0.56118 1 4287 4287 2.9952 0.93549 1 97039 + 55810 26991 35058 35076 64082 64082 0.04171628874951239 YGESGLPYLI 10 Unmodified _YGESGLPYLI_ 0 0 0 L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2892456054688 2 556.28714 1110.55973 NaN NaN NaN NaN NaN NaN NaN 62.984 1 66.344 65.844 66.844 3.3595 0 0 0 0.53105 1 14876 14876 10.074 0 1 55811 9684 35059 35077 64083 64083 0.008869035205634646 YGESGLPYLI 10 Unmodified _YGESGLPYLI_ 0 0 0 L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2883911132812 2 556.28714 1110.55973 0.42247 0.00023501 2.3594 0.0013125 2.7818 0.0015475 556.288064006567 63.242 0.54201 66.498 66.191 66.733 3.2558 50 38 2 0 0 0 0.51565 2 15004 14963;15004 10.074 2.1638 1 79922 55812 9684 35059 35077 64084;64085 64085 0.008869035205634646 YGESGLPYLI 10 Unmodified _YGESGLPYLI_ 0 0 0 L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|235|2|anti-sense MSMS UPN47_class_I_Rep_3 4 556.2872314453125 2 556.28714 1110.55973 NaN NaN NaN NaN NaN NaN NaN 63.379 1 66.549 66.049 67.049 3.1698 0 0 0 0.53105 1 15089 15089 6.2058 0 1 55813 9684 35059 35077 64086 64086 0.008869035205634646 YGETTGGGQFD 11 Unmodified _YGETTGGGQFD_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MSMS UPN48_class_I_Rep_1 5 566.2330932617188 2 566.233093 1130.45163 NaN NaN NaN NaN NaN NaN NaN 28.178 1 31.736 31.236 32.236 3.5571 0 0 0 0.38417 1 3735 3735 0 0 1 + 55814 20425 35060 35078 64087 64087 -0.1083751280064007 YGFCFLGP 8 Unmodified _YGFCFLGP_ 0 0 0 L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|83|2|anti-sense L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|83|2|anti-sense L1ME3A_dup6429|chr7:5208066-5209542:-|2.1017829051487413|0.0369990902266292|5.83|151.0|83|2|anti-sense MSMS UPN48_class_I_Rep_2 6 451.7798767089844 2 452.207107 902.399661 NaN NaN NaN NaN NaN NaN NaN 77.772 1 81.395 80.895 81.895 3.6222 0 0 0 0.40738 1 18427 18427 0.79363 0 1 55815 12677 35061 35079 64088 64088 -0.055443029574462344 YGFHCVEEYS 10 Unmodified _YGFHCVEEYS_ 0 0 0 L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|245|3|anti-sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|245|3|anti-sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|245|3|anti-sense MSMS UPN47_class_I_Rep_2 3 617.2471923828125 2 617.247689 1232.48082 NaN NaN NaN NaN NaN NaN NaN 39.58 1 42.958 42.458 43.458 3.3785 0 0 0 0.53105 1 7789 7789 1.6526 0.17072 1 55816 8569 35062 35080 64089 64089 -0.12611691776010048 YGFPKAVSVF 10 Unmodified _YGFPKAVSVF_ 0 0 0 ENSG00000100156|ENST00000681075|SLC16A8 ENSG00000100156|ENST00000681075|SLC16A8 ENSG00000100156|ENST00000681075|SLC16A8 MULTI-MSMS UPN48_class_I_Rep_2 6 557.8004760742188 2 557.800217 1113.58588 0.49575 0.00027653 -0.76981 -0.0004294 -0.27405 -0.00015287 557.8001100570709 69.463 1.187 72.984 72.52 73.707 3.5216 290 97 5 0 0 0 0.35076 1 16144 16144 24.021 2.2739 1 1888800 55817 1478 35063 35081 64090 64090 0.033632174827062045 YGFPKAVSVF 10 Unmodified _YGFPKAVSVF_ 0 0 0 ENSG00000100156|ENST00000681075|SLC16A8 ENSG00000100156|ENST00000681075|SLC16A8 ENSG00000100156|ENST00000681075|SLC16A8 MULTI-MSMS UPN48_class_I_Rep_3 7 557.8004150390625 2 557.800217 1113.58588 0.46995 0.00026214 -0.86151 -0.00048055 -0.39156 -0.00021841 557.800105764204 69.35 1.1396 72.863 72.474 73.614 3.5128 294 89 5 0 0 0 0.52083 1 15880 15880 9.3831 1.473 1 1798400 55818 1478 35063 35081 64091 64091 0.033632174827062045 YGFPPFLA 8 Unmodified _YGFPPFLA_ 0 0 0 REV__L1MB3_dup10497|chr10:96048448-96049091:-|1.4143260322407305|0.0489005094461122|4.85|150.0|46|3|anti-sense REV__L1MB3_dup10497|chr10:96048448-96049091:-|1.4143260322407305|0.0489005094461122|4.85|150.0|46|3|anti-sense MSMS UPN47_class_I_Rep_3 4 456.6998596191406 2 456.236722 910.45889 NaN NaN NaN NaN NaN NaN NaN 25.78 1 29.128 28.628 29.628 3.3478 0 0 0 0.40738 1 3676 3676 0.79363 0 1 + 55819 25797 35064 35082 64092 64092 7.916328365809022E-05 YGGGSISGGG 10 Unmodified _YGGGSISGGG_ 0 0 0 REV__ENSG00000172867|ENST00000309680|KRT2 REV__ENSG00000172867|ENST00000309680|KRT2 MULTI-MSMS UPN47_class_I_Rep_2 3 406.18231201171875 2 406.182675 810.350796 -0.99939 -0.00040593 0.18011 7.3156E-05 -0.81928 -0.00033278 406.1826665580351 17.183 0.63897 20.57 20.275 20.914 3.387 98 72 2 0 0 0 0.56543 1 1185 1185 0 0 1 38007 + + 55820 17480 35065 35083 64093 64093 -0.06196499992825011 YGGHGDISSS 10 Unmodified _YGGHGDISSS_ 0 0 0 REV__L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|55|2|anti-sense REV__L1ME3A_dup13403|chr16:70719335-70720339:+|2.0386661988640853|0.1652758154937553|3.62|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_2 6 490.20867919921875 2 490.209421 978.404288 NaN NaN NaN NaN NaN NaN NaN 76.002 1 79.603 79.103 80.103 3.6011 0 0 0 0.53105 1 17940 17940 1.6526 0.85899 1 + 55821 28001 35066 35084 64094 64094 -0.0857774728098093 YGGVAYLL 8 Unmodified _YGGVAYLL_ 0 0 0 REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron MULTI-MSMS UPN47_class_I_Rep_2 3 430.25604248046875 2 428.234179 854.453805 -0.26651 -0.00011413 0.89418 0.00038292 0.62767 0.00026879 428.23198298090307 109.23 0.6197 112.76 112.63 113.25 3.5307 178 83 5 0 0 0 0.82752 1 26624 26624 2.8892 0 1 6538100 + 55822 18406 35067 35085 64095 64095 0.02075612465762333 YGGVAYLL 8 Unmodified _YGGVAYLL_ 0 0 0 REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron MULTI-MATCH UPN47_class_I_Rep_1 2 2 428.234179 854.453805 0.12825 5.4921E-05 2.197 0.00094081 2.3252 0.00099573 428.23184032176675 109.18 0.29378 112.79 112.68 112.97 3.6046 -0.012809 0.001773 NaN 2.8892 149 32 6 NaN NaN NaN NaN 0 NaN NaN 0 6018100 + 55823 18406 35067 35085 0.02075612465762333 YGGVAYLL 8 Unmodified _YGGVAYLL_ 0 0 0 REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 428.234179 854.453805 -0.43665 -0.00018699 -0.74197 -0.00031774 -1.1786 -0.00050473 428.23203185085464 109.22 0.3926 112.76 112.6 113 3.5347 -0.041403 -0.00074414 NaN 2.8892 116 51 4 NaN NaN NaN NaN 0 NaN NaN 0 5566900 + 55824 18406 35067 35085 0.02075612465762333 YGGVAYLL 8 Unmodified _YGGVAYLL_ 0 0 0 REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron MULTI-MATCH UPN48_class_I_Rep_1 5 2 428.234179 854.453805 -0.088826 -3.8038E-05 -0.43645 -0.0001869 -0.52527 -0.00022494 428.23194426538964 109.19 0.4104 112.82 112.68 113.09 3.6321 0.021504 -0.00048247 NaN 2.8892 125 50 4 NaN NaN NaN NaN 0 NaN NaN 0 4887200 + 55825 18406 35067 35085 0.02075612465762333 YGGVAYLL 8 Unmodified _YGGVAYLL_ 0 0 0 REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron REV__ENSG00000109466.14,KLHL2,chr4,+,I18.1,165314167,165317825|54|7.52|2|intron MULTI-MATCH UPN48_class_I_Rep_3 7 2 428.234179 854.453805 0.12581 5.3876E-05 -0.3457 -0.00014804 -0.21989 -9.4164E-05 428.2318197719853 109.19 0.2794 112.87 112.74 113.02 3.6751 0.068895 -0.00040474 NaN 2.8892 114 39 4 NaN NaN NaN NaN 0 NaN NaN 0 5627400 + 55826 18406 35067 35085 0.02075612465762333 YGHDPVSIG 9 Unmodified _YGHDPVSIG_ 0 0 0 REV__ENSG00000157240|ENST00000287934|FZD1 REV__ENSG00000157240|ENST00000287934|FZD1 MSMS UPN46_class_I_Rep_3 1 472.729248046875 2 472.727249 943.439946 NaN NaN NaN NaN NaN NaN NaN 102.78 1 102.78 102.28 103.28 0 0 0 0 0.35339 1 25084 25084 7.9102 0.62092 1 + 55827 19819 35068 35086 64096 64096 -0.03403665033317793 YGHFHDIDY 9 Unmodified _YGHFHDIDY_ 0 0 0 L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|215|2|anti-sense;L1P3_dup1257|chr6:44878625-44884626:+|1.320267927406906|0.0242088410605133|5.77|151.0|322|3|anti-sense;L1PA7_dup7906|chrX:56058341-56063913:-|1.3659483838665938|0.0256468450322085|5.73|150.0|189|1|anti-sense;L1PA7_dup5864|chr7:16159381-16162961:-|3.823535854610049|0.1911005985247736|4.32|151.0|206|3|anti-sense;L1PA5_dup2202|chr3:136522577-136528385:-|1.7736552928064924|0.2571431183600748|2.79|151.0|199|1|anti-sense;L1P2_dup1233|chr12:9610354-9615106:+|1.804594434662148|0.2339315930464847|2.95|151.0|195|2|anti-sense;L1PA7_dup5033|chr6:47556648-47559250:-|1.1627507993626758|0.0168418913074554|6.11|150.0|145|3|anti-sense;L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|276|2|anti-sense;L1PA5_dup9115|chr13:29823716-29829837:-|2.9621575776931537|0.2048905214131942|3.85|151.0|266|2|anti-sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|215|2|anti-sense L1PB3_dup116|chr1:169247489-169251572:-|2.494786635910035|0.0381120154918105|6.03|151.0|215|2|anti-sense MSMS UPN47_class_I_Rep_3 4 583.7489013671875 2 583.748713 1165.48287 NaN NaN NaN NaN NaN NaN NaN 72.657 1 75.885 75.385 76.385 3.2271 0 0 0 0.38639 1 17898 17898 3.9444 0 1 55828 13480 35069 35087 64097 64097 -0.0932489497588449 YGHVYKAR 8 Unmodified _YGHVYKAR_ 0 0 0 ENST00000460913.1_1_6:110991731-111136363:-|nuORF;ENST00000457688.5_2_6:111067381-111136294:-|nuORF;ENSG00000155111|ENST00000368911|CDK19 ENST00000460913.1_1_6:110991731-111136363:-|nuORF ENST00000460913.1_1_6:110991731-111136363:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 497.2660827636719 2 497.266876 992.519199 0.16639 8.2741E-05 -0.16758 -8.3334E-05 -0.0011916 -5.9252E-07 497.2667742606035 40.184 1.0163 43.835 43.604 44.62 3.6509 160 96 2 0 0 0 0.82752 1 7329 7329 2.3027 0.24298 1 194490 55829 3695 35070 35088 64098 64098 0.022640267114638846 YGIFHCYMEY 10 Unmodified _YGIFHCYMEY_ 0 0 0 ENST00000588393.5_1_19:10742408-10745595:+|nuORF;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2 ENST00000588393.5_1_19:10742408-10745595:+|nuORF ENST00000588393.5_1_19:10742408-10745595:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 442.23138427734375 3 442.515832 1324.52567 -0.36557 -0.00016177 -0.039408 -1.7439E-05 -0.40497 -0.00017921 442.51573169758626 39.754 0.6701 43.421 43.146 43.817 3.6668 75 50 2 0 0 0 0.84575 1 7930 7930 6.1918 0 1 68943 55830 2618 35071 35089 64099 64099 -0.1236158423434972 YGIKPCLQNK 10 Unmodified _YGIKPCLQNK_ 0 0 0 AluJb_dup54846|chr8:38218189-38218481:-|1.2229700276284494|0.0875827013815576|3.8|151.0|2|1|sense AluJb_dup54846|chr8:38218189-38218481:-|1.2229700276284494|0.0875827013815576|3.8|151.0|2|1|sense AluJb_dup54846|chr8:38218189-38218481:-|1.2229700276284494|0.0875827013815576|3.8|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 582.3137817382812 2 582.315709 1162.61686 NaN NaN NaN NaN NaN NaN NaN 70.783 1 70.783 70.283 71.283 0 0 0 0 0.53105 1 16281 16281 1.4819 0 1 55831 55 35072 35090 64100 64100 0.04206047525303802 YGILEKAKTK 10 Unmodified _YGILEKAKTK_ 0 0 0 L1MEc_dup8703|chr7:152122767-152124358:+|2.2264988270237054|0.1763734667697287|3.66|151.0|38|2|sense L1MEc_dup8703|chr7:152122767-152124358:+|2.2264988270237054|0.1763734667697287|3.66|151.0|38|2|sense L1MEc_dup8703|chr7:152122767-152124358:+|2.2264988270237054|0.1763734667697287|3.66|151.0|38|2|sense MSMS UPN47_class_I_Rep_2 3 575.8433227539062 2 575.845156 1149.67576 NaN NaN NaN NaN NaN NaN NaN 83.307 1 86.719 86.219 87.219 3.4116 0 0 0 0.53105 1 20765 20765 1.6526 1.1279 1 55832 13148 35073 35091 64101 64101 0.10690847091268552 YGINLSVYQW 10 Unmodified _YGINLSVYQW_ 0 0 0 L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|36|1|sense;L1MA4_dup1999|chr3:149931558-149932328:-|1.84166321013766|0.0394077939867932|5.55|151.0|19|3|sense L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|36|1|sense L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|36|1|sense MSMS UPN48_class_I_Rep_1 5 621.8106689453125 2 621.811313 1241.60807 NaN NaN NaN NaN NaN NaN NaN 56.196 1 59.698 59.198 60.198 3.5014 0 0 0 0.53105 1 12069 12069 1.6526 0 1 55833 9659 35074 35092 64102 64102 -0.003066028395323883 YGKHIRGY 8 Unmodified _YGKHIRGY_ 0 0 0 L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|64|2|sense L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|64|2|sense L1PA16_dup10287|chr11:94423045-94428581:+|1.3960281930357163|0.3801178768710538|1.88|151.0|64|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 497.26678466796875 2 497.266876 992.519199 0.20271 0.0001008 -0.45815 -0.00022782 -0.25544 -0.00012702 497.2667201206715 40.547 1.0367 44.052 43.702 44.739 3.5048 145 96 2 0 0 0 0.82752 1 7320 7320 13.508 4.1604 1 186820 55834 14015 35075 35093 64103 64103 0.022640267114752533 YGKKESYL 8 Unmodified _YGKKESYL_ 0 0 0 HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|141|3|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|141|3|sense HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|141|3|sense MSMS UPN48_class_I_Rep_2 6 493.7889099121094 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 29.289 1 32.921 32.421 33.421 3.6316 0 0 0 0.40604 1 4140 4140 2.5775 0 1 55835 8109 35076 35094 64104 64104 0.01350365177609092 YGKKQLYA 8 Unmodified _YGKKQLYA_ 0 0 0 REV__ENSG00000122218|ENST00000241704|COPA REV__ENSG00000122218|ENST00000241704|COPA MSMS UPN47_class_I_Rep_3 4 485.8119201660156 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 79.977 1 83.286 82.786 83.786 3.309 0 0 0 0.40746 1 20013 20013 0.69038 0 1 + 55836 18744 35077 35095 64105 64105 0.04238375277122941 YGKLLGQK 8 Unmodified _YGKLLGQK_ 0 0 0 REV__LTR36_dup56|chr2:46974089-46974706:-|1.5565248837025023|0.1379737649998659|3.5|151.0|33|2|anti-sense REV__LTR36_dup56|chr2:46974089-46974706:-|1.5565248837025023|0.1379737649998659|3.5|151.0|33|2|anti-sense MSMS UPN47_class_I_Rep_3 4 453.2998046875 2 453.774003 905.533452 NaN NaN NaN NaN NaN NaN NaN 25.596 1 28.947 28.447 29.447 3.3509 0 0 0 0.40746 1 3623 3623 0.69038 0 1 + 55837 30907 35078 35096 64106 64106 0.07690679139761869 YGKQKSFL 8 Unmodified _YGKQKSFL_ 0 0 0 REV__ENSG00000188385|ENST00000684848|JAKMIP3 REV__ENSG00000188385|ENST00000684848|JAKMIP3 MSMS UPN46_class_I_Rep_3 1 485.77166748046875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 119.28 1 119.28 118.78 119.78 0 0 0 0 0.40746 1 29640 29640 0.69038 0 1 + 55838 20968 35079 35097 64107 64107 0.042383752771456784 YGKQKSFL 8 Unmodified _YGKQKSFL_ 0 0 0 REV__ENSG00000188385|ENST00000684848|JAKMIP3 REV__ENSG00000188385|ENST00000684848|JAKMIP3 MSMS UPN48_class_I_Rep_2 6 485.77178955078125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 22.498 1 26.141 25.641 26.641 3.6432 0 0 0 0.40625 1 2309 2309 2.3027 0 1 + 55839 20968 35079 35097 64108 64108 0.042383752771456784 YGKRHGHTR 9 Unmodified _YGKRHGHTR_ 0 0 0 REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|114|2|sense REV__L1PA4_dup8682|chr11:10226333-10232454:-|1.3673557124299285|0.0864401918968047|3.98|151.0|114|2|sense MSMS UPN47_class_I_Rep_2 3 556.297119140625 2 556.29703 1110.57951 NaN NaN NaN NaN NaN NaN NaN 58.146 1 61.437 60.937 61.937 3.2912 0 0 0 0.39428 1 13438 13438 2.0598 0 1 + 55840 29684 35080 35098 64109 64109 0.02864137094547914 YGKSSYYLE 9 Unmodified _YGKSSYYLE_ 0 0 0 HERVK9-int_dup572|chr16:10418418-10419244:-|1.572373021651729|0.1510749588439005|3.38|150.0|20|3|sense;HERVK9-int_dup120|chr3:185013289-185019290:-|2.116603786419757|0.2206755608062269|3.26|151.0|174|3|sense;HERVK9-int_dup344|chr8:54074375-54076515:+|2.633493299356718|0.1344927142002491|4.29|151.0|16|1|sense HERVK9-int_dup572|chr16:10418418-10419244:-|1.572373021651729|0.1510749588439005|3.38|150.0|20|3|sense HERVK9-int_dup572|chr16:10418418-10419244:-|1.572373021651729|0.1510749588439005|3.38|150.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 555.2593383789062 2 555.261122 1108.50769 NaN NaN NaN NaN NaN NaN NaN 61.346 1 64.611 64.111 65.111 3.2654 0 0 0 0.38916 1 14414 14414 3.2813 0 1 55841 8308 35081 35099 64110 64110 -0.04222259893185765 YGKVTSLILI 10 Unmodified _YGKVTSLILI_ 0 0 0 nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L nc|ENSG00000121210|A2VDJ0-2|TMEM131L MSMS UPN48_class_I_Rep_3 7 553.8446655273438 2 553.844625 1105.6747 NaN NaN NaN NaN NaN NaN NaN 26.015 1 29.781 29.281 30.281 3.7663 0 0 0 0.53105 1 3243 3243 0 0 1 55842 2351 35082 35100 64111 64111 0.1260863272241295 YGLFDAKP 8 Unmodified _YGLFDAKP_ 0 0 0 REV__ENST00000355112.7_1_15:91308559-91310162:+|nuORF REV__ENST00000355112.7_1_15:91308559-91310162:+|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 455.7370910644531 2 455.737086 909.459619 0.20057 9.1407E-05 -0.022093 -1.0068E-05 0.17848 8.1338E-05 455.7368475225757 96.234 0.37354 96.234 96.002 96.376 0 49 40 2 0 0 0 0.82752 2 23396 23396;23430 2.5775 0 1 430760 + 55843 21862 35083 35101 64112;64113 64112 0.0012671097741758786 YGLFDRGLGF 10 Unmodified _YGLFDRGLGF_ 0 0 0 REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.7921142578125 2 572.792924 1143.57129 0.44692 0.00025599 -0.66645 -0.00038174 -0.21953 -0.00012575 572.7925455065271 70.73 0.51674 74.19 73.915 74.432 3.4598 81 55 2 0 0 0 0.53188 1 16444 16444 7.9102 3.1541 1 167570 + 55844 27689 35084 35102 64114 64114 0.005251453345636037 YGLFDRGLGF 10 Unmodified _YGLFDRGLGF_ 0 0 0 REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 572.7933349609375 2 572.792924 1143.57129 0.47436 0.00027171 -0.71149 -0.00040754 -0.23713 -0.00013583 572.7925569680389 70.602 0.63367 74.138 73.799 74.433 3.5359 118 68 2 0 0 0 0.44806 1 16451 16451 15.847 15.847 1 157140 + 55845 27689 35084 35102 64115 64115 0.005251453345636037 YGLFDRGLGF 10 Unmodified _YGLFDRGLGF_ 0 0 0 REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 572.7911987304688 2 572.792924 1143.57129 NaN NaN NaN NaN NaN NaN NaN 70.112 1 73.648 73.148 74.148 3.5359 0 0 0 0.53105 1 16289 16289 3.5965 0 1 + 55846 27689 35084 35102 64116 64116 0.005251453345636037 YGLFDRGLGF 10 Unmodified _YGLFDRGLGF_ 0 0 0 REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense REV__L1ME1_dup23347|chr12:132056448-132057521:+|1.4219233415630008|0.241932529176351|2.56|151.0|25|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 572.7928466796875 2 572.792924 1143.57129 0.52717 0.00030196 -0.67918 -0.00038903 -0.15202 -8.7074E-05 572.792529820199 70.496 0.7744 74.015 73.734 74.508 3.5185 149 80 3 0 0 0 0.47413 1 16310 16310 13.906 3.0821 1 236550 + 55847 27689 35084 35102 64117 64117 0.005251453345636037 YGLGSAEQFF 10 Unmodified _YGLGSAEQFF_ 0 0 0 MLT1H_dup3717|chr6:43459832-43460357:+|1.2791119483893678|0.1356130629241767|3.24|151.0|18|1|anti-sense MLT1H_dup3717|chr6:43459832-43460357:+|1.2791119483893678|0.1356130629241767|3.24|151.0|18|1|anti-sense MLT1H_dup3717|chr6:43459832-43460357:+|1.2791119483893678|0.1356130629241767|3.24|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.760986328125 2 559.761289 1117.50803 0.47656 0.00026676 -0.21639 -0.00012113 0.26017 0.00014563 559.761108828131 68.316 0.81033 71.826 71.476 72.286 3.5093 189 71 3 0 0 0 0.51003 1 15723 15723 10.824 0 1 605620 55848 16426 35085 35103 64118 64118 -0.04602840173333789 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN48_class_I_Rep_1 5 542.776611328125 2 542.776742 1083.53893 0.49825 0.00027044 -0.032517 -1.7649E-05 0.46573 0.00025279 542.7766430500033 65.703 0.7249 69.155 68.776 69.501 3.4516 94 50 3 0 0 0 0.0047657 4 14952 14877;14916;14952;14990 101.72 45.181 1 393720 55849 1568 35086 35104 64119;64120;64121;64122 64121 0.0005035793155911961 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN48_class_I_Rep_1 5 542.77685546875 2 542.776742 1083.53893 NaN NaN NaN NaN NaN NaN NaN 65.933 1 69.385 68.885 69.885 3.4516 0 0 0 0.025567 1 15038 15038 50.855 20.63 1 55850 1568 35086 35104 64123 64123 0.0005035793155911961 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN48_class_I_Rep_1 5 542.7765502929688 2 542.776742 1083.53893 NaN NaN NaN NaN NaN NaN NaN 66.07 1 69.521 69.021 70.021 3.4516 0 0 0 0.38639 1 15080 15080 3.9444 0 1 55851 1568 35086 35104 64124 64124 0.0005035793155911961 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN48_class_I_Rep_1 5 542.776123046875 2 542.776742 1083.53893 NaN NaN NaN NaN NaN NaN NaN 66.109 1 69.56 69.06 70.06 3.4516 0 0 0 0.36505 1 15092 15092 7.2892 0 1 55852 1568 35086 35104 64125 64125 0.0005035793155911961 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN48_class_I_Rep_2 6 542.7767944335938 2 542.776742 1083.53893 0.51016 0.00027691 -0.11976 -6.5006E-05 0.3904 0.0002119 542.7765300393795 65.489 0.78644 68.968 68.639 69.426 3.4792 100 56 2 0 0 0 0.0088319 5 14863 14822;14863;14900;14939;14980 70.716 40.491 1 387830 55853 1568 35086 35104 64126;64127;64128;64129;64130 64127 0.0005035793155911961 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN48_class_I_Rep_2 6 542.7742919921875 2 542.776742 1083.53893 NaN NaN NaN NaN NaN NaN NaN 65.951 1 69.438 68.938 69.938 3.4866 0 0 0 0.28335 1 15030 15030 11.64 0 1 55854 1568 35086 35104 64131 64131 0.0005035793155911961 YGLIFHSTF 9 Unmodified _YGLIFHSTF_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS UPN48_class_I_Rep_3 7 542.7764892578125 2 542.776742 1083.53893 0.54763 0.00029724 -0.10938 -5.9367E-05 0.43825 0.00023787 542.7765519837583 65.38 0.76707 68.887 68.567 69.334 3.5077 105 50 3 0 0 0 0.0069861 7 14774 14699;14736;14742;14774;14820;14866;14890 123.1 66.555 1 382770 55855 1568 35086 35104 64132;64133;64134;64135;64136;64137;64138 64135 0.0005035793155911961 YGLPGLFLL 9 Unmodified _YGLPGLFLL_ 0 0 0 REV__ENST00000599380.5_1_19:17581362-17608411:+|nuORF REV__ENST00000599380.5_1_19:17581362-17608411:+|nuORF MSMS UPN48_class_I_Rep_3 7 496.7922668457031 2 496.794404 991.574254 NaN NaN NaN NaN NaN NaN NaN 64.246 1 67.754 67.254 68.254 3.5083 0 0 0 0.3264 1 14429 14429 9.3474 0 1 + 55856 23206 35087 35105 64139 64139 0.07813020459366271 YGLRELTPI 9 Unmodified _YGLRELTPI_ 0 0 0 Tigger1_dup3198|chr4:78892632-78893586:-|1.1808981152803928|0.0636816655331731|4.21|150.0|18|2|sense Tigger1_dup3198|chr4:78892632-78893586:-|1.1808981152803928|0.0636816655331731|4.21|150.0|18|2|sense Tigger1_dup3198|chr4:78892632-78893586:-|1.1808981152803928|0.0636816655331731|4.21|150.0|18|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 531.30078125 2 531.303124 1060.5917 0.44101 0.00023431 -0.61383 -0.00032613 -0.17282 -9.1819E-05 531.3027457274211 64.067 1.1017 67.525 67.233 68.335 3.4578 137 84 3 0 0 0 0.47197 1 14667 14667 3.5965 0.31518 1 735970 55857 33073 35088 35106 64140 64140 0.06382315994369492 YGLVPRTP 8 Unmodified _YGLVPRTP_ 0 0 0 REV__ENST00000561750.1_1_16:777422-778482:+|nuORF REV__ENST00000561750.1_1_16:777422-778482:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 451.75787353515625 2 451.758352 901.502152 -0.53983 -0.00024387 -0.22309 -0.00010078 -0.76292 -0.00034465 451.75815341229946 35.455 0.54018 38.866 38.679 39.219 3.4114 42 33 2 0 0 0 0.82752 1 6632 6632 0.79363 0 1 37301 + 55858 23030 35089 35107 64141 64141 0.0474610610565378 YGLYKKMIV 9 Unmodified _YGLYKKMIV_ 0 0 0 ENST00000492506.1_1_5:141016042-141016357:-|nuORF;ENST00000495485.1_1_5:141009604-141016357:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3 ENST00000492506.1_1_5:141016042-141016357:-|nuORF ENST00000492506.1_1_5:141016042-141016357:-|nuORF MSMS UPN46_class_I_Rep_3 1 557.8198852539062 2 557.820095 1113.62564 NaN NaN NaN NaN NaN NaN NaN 12.597 1 12.597 12.097 13.097 0 0 0 0 0.40038 1 151 151 0.6015 0 1 55859 4541 35090 35108 64142 64142 0.07337021161765733 YGMGRSPLI 9 Unmodified _YGMGRSPLI_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|358|3|anti-sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|358|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 497.2628479003906 2 497.262945 992.511337 -0.25257 -0.00012559 0.30179 0.00015007 0.049216 2.4473E-05 497.2629631970701 37.65 1.1169 41.315 40.937 42.054 3.6652 198 84 3 0 0 0 0.090251 4 7174 7137;7174;7211;7248 36.127 0.59474 1 867850 + 55860 23721 35091 35109 64143;64144;64145;64146 64144 0.014781313996763856 YGMGRSPLI 9 Unmodified _YGMGRSPLI_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|358|3|anti-sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|358|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 497.26287841796875 2 497.262945 992.511337 -0.1546 -7.6878E-05 0.21459 0.00010671 0.059989 2.983E-05 497.262934568386 38.037 1.5586 41.424 40.919 42.478 3.3879 252 119 3 0 0 0 0.17897 2 7407 7252;7407 22.736 3.2973 1 864650 + 55861 23721 35091 35109 64147;64148 64148 0.014781313996763856 YGMGRSPLI 9 Unmodified _YGMGRSPLI_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|358|3|anti-sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|358|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 497.26275634765625 2 497.262945 992.511337 -0.28129 -0.00013987 0.16792 8.3499E-05 -0.11337 -5.6374E-05 497.2629429770066 38.117 1.608 41.358 40.956 42.564 3.2414 280 118 4 0 0 0 0.1249 2 7444 7444;7483 29.082 3.2973 1 861130 + 55862 23721 35091 35109 64149;64150 64149 0.014781313996763856 YGMHFWSFY 9 Unmodified _YGMHFWSFY_ 0 0 0 REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|92|3|anti-sense REV__L1MD1_dup3196|chr8:47590191-47591426:-|1.139463093691607|0.0140469342180242|6.34|150.0|92|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 619.7633056640625 2 619.260402 1236.50625 0.14247 8.8227E-05 1.3367 0.00082777 1.4792 0.000916 619.7636756045996 43.65 0.6684 47.008 46.711 47.379 3.358 55 36 3 0 0 0 0.48643 1 9061 9061 2.0598 0 1 123200 + 55863 27321 35092 35110 64151 64151 -0.10254172462919087 YGMIKLQYC 9 Unmodified _YGMIKLQYC_ 0 0 0 REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|13|1|sense REV__L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 559.7720336914062 2 559.772288 1117.53002 NaN NaN NaN NaN NaN NaN NaN 71.003 1 74.539 74.039 75.039 3.5359 0 0 0 0.39518 1 16541 16541 1.8442 0 1 + 55864 24092 35093 35111 64152 64152 -0.0240407502076323 YGMRIIPQ 8 Unmodified _YGMRIIPQ_ 0 0 0 L1MB7_dup15964|chr12:93427422-93427764:+|1.1854049061382794|0.0243066111557212|5.61|151.0|4|1|sense L1MB7_dup15964|chr12:93427422-93427764:+|1.1854049061382794|0.0243066111557212|5.61|151.0|4|1|sense L1MB7_dup15964|chr12:93427422-93427764:+|1.1854049061382794|0.0243066111557212|5.61|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 489.2652282714844 2 489.265487 976.516422 0.27033 0.00013226 -0.31648 -0.00015484 -0.046154 -2.2582E-05 489.2652097818892 50.169 0.75964 53.512 53.107 53.867 3.3431 72 40 2 0 0 0 0.82752 1 11020 11020 13.508 2.3934 1 186370 55865 10729 35094 35112 64153 64153 0.02722435262307954 YGMRIIPQ 8 Unmodified _YGMRIIPQ_ 0 0 0 L1MB7_dup15964|chr12:93427422-93427764:+|1.1854049061382794|0.0243066111557212|5.61|151.0|4|1|sense L1MB7_dup15964|chr12:93427422-93427764:+|1.1854049061382794|0.0243066111557212|5.61|151.0|4|1|sense L1MB7_dup15964|chr12:93427422-93427764:+|1.1854049061382794|0.0243066111557212|5.61|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 489.2654724121094 2 489.265487 976.516422 0.23514 0.00011505 -0.48031 -0.000235 -0.24516 -0.00011995 489.2652774484759 50.171 0.81619 53.398 53.084 53.901 3.2262 87 45 3 0 0 0 0.82752 1 11113 11113 13.508 2.3934 1 181880 55866 10729 35094 35112 64154 64154 0.02722435262307954 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_1 2 549.7826538085938 2 549.782556 1097.55056 -0.0094077 -5.1722E-06 0.16488 9.0648E-05 0.15547 8.5476E-05 549.7825818484746 35.231 0.87329 38.907 38.603 39.476 3.6762 124 60 3 0 0 0 0.066633 4 6432 6396;6432;6472;6512 41.84 0 1 187940 55867 3956 35095 35113 64155;64156;64157;64158 64156 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_1 2 549.782470703125 2 549.782556 1097.55056 0.092372 5.0785E-05 0.0604 3.3207E-05 0.15277 8.3992E-05 549.7824308764908 43.228 2.3344 46.915 46.346 48.681 3.6875 287 153 3 0 0 0 0.066633 11 8845 8765;8804;8845;8885;8937;8982;9024;9065;9104;9147;9187 41.84 0 1 242370 55868 3956 35095 35113 64159;64160;64161;64162;64163;64164;64165;64166;64167;64168;64169 64161 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_1 2 549.7827758789062 2 549.782556 1097.55056 0.2579 0.00014179 0.46293 0.00025451 0.72083 0.0003963 549.7825519514275 49.428 1.546 53.087 52.597 54.143 3.6592 217 94 3 0 0 0 0.057664 3 10760 10760;10890;10931 45.7 3.86 1 820340 55869 3956 35095 35113 64170;64171;64172 64170 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_2 3 549.7824096679688 2 549.782556 1097.55056 0.029889 1.6432E-05 0.07838 4.3092E-05 0.10827 5.9524E-05 549.7825940579573 35.47 0.81417 38.882 38.579 39.393 3.4114 111 51 3 0 0 0 0.066633 4 6579 6539;6579;6624;6669 41.84 0.69251 1 210380 55870 3956 35095 35113 64173;64174;64175;64176 64174 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_2 3 549.7824096679688 2 549.782556 1097.55056 0.14314 7.8698E-05 0.0021884 1.2032E-06 0.14533 7.9901E-05 549.782397376717 43.698 2.3644 47.056 46.311 48.675 3.358 278 147 3 0 0 0 0.047711 11 8970 8884;8924;8970;9012;9053;9102;9164;9206;9244;9283;9332 49.933 0 1 271390 55871 3956 35095 35113 64177;64178;64179;64180;64181;64182;64183;64184;64185;64186;64187 64179 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_2 3 549.7826538085938 2 549.782556 1097.55056 0.41304 0.00022708 0.60149 0.00033069 1.0145 0.00055777 549.7824761146695 49.801 1.3738 53.144 52.743 54.117 3.3431 206 76 4 0 0 0 0.13244 3 11017 11017;11064;11084 27.629 0 1 770990 55872 3956 35095 35113 64188;64189;64190 64188 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_3 4 549.7825317382812 2 549.782556 1097.55056 -0.10702 -5.8837E-05 0.0043314 2.3813E-06 -0.10269 -5.6456E-05 549.7824820778229 35.684 0.80867 38.939 38.582 39.391 3.2547 120 53 3 0 0 0 0.097406 5 6614 6576;6614;6659;6700;6746 34.402 0 1 189800 55873 3956 35095 35113 64191;64192;64193;64194;64195 64192 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_3 4 549.78271484375 2 549.782556 1097.55056 0.16367 8.9982E-05 -0.10767 -5.9196E-05 0.055997 3.0786E-05 549.782376271967 43.731 2.4574 46.973 46.322 48.779 3.2419 308 153 3 0 0 0 0.066633 11 9389 8965;9004;9043;9083;9131;9170;9214;9252;9294;9343;9389 41.84 0 1 276840 55874 3956 35095 35113 64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206 64206 0.005685549549070856 YGNTLVEFR 9 Unmodified _YGNTLVEFR_ 0 0 0 nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B nc|ENSG00000162745|Q68BL8-2|OLFML2B MULTI-MSMS UPN47_class_I_Rep_3 4 549.78271484375 2 549.782556 1097.55056 0.47737 0.00026245 0.063571 3.495E-05 0.54094 0.0002974 549.7824123284953 49.961 1.425 53.187 52.765 54.19 3.2262 169 78 3 0 0 0 0.32682 1 11169 11169 12.241 0 1 506210 55875 3956 35095 35113 64207 64207 0.005685549549070856 YGNVTSLGY 9 Unmodified _YGNVTSLGY_ 0 0 0 nc|ENSG00000186448|O14709-2|ZNF197 nc|ENSG00000186448|O14709-2|ZNF197 nc|ENSG00000186448|O14709-2|ZNF197 MULTI-MSMS UPN47_class_I_Rep_1 2 487.2345886230469 2 487.234907 972.455261 -0.26723 -0.0001302 0.064786 3.1566E-05 -0.20244 -9.8635E-05 487.2349397332596 40.277 0.87923 43.943 43.616 44.495 3.6668 133 69 3 0 0 0 0.21527 5 7917 7917;7953;7991;8033;8072 19.257 3.4098 1 326110 55876 16781 35096 35114 64208;64209;64210;64211;64212 64208 -0.032067982361240865 YGNVTSLGY 9 Unmodified _YGNVTSLGY_ 0 0 0 nc|ENSG00000186448|O14709-2|ZNF197 nc|ENSG00000186448|O14709-2|ZNF197 nc|ENSG00000186448|O14709-2|ZNF197 MULTI-MSMS UPN47_class_I_Rep_2 3 487.235107421875 2 487.234907 972.455261 -0.14572 -7.1002E-05 0.21221 0.00010339 0.066483 3.2393E-05 487.23494335217873 40.606 0.92393 43.977 43.645 44.569 3.3712 111 74 2 0 0 0 0.15122 4 8135 8054;8135;8173;8209 25.399 3.6527 1 359000 55877 16781 35096 35114 64213;64214;64215;64216 64214 -0.032067982361240865 YGNVTSLGY 9 Unmodified _YGNVTSLGY_ 0 0 0 nc|ENSG00000186448|O14709-2|ZNF197 nc|ENSG00000186448|O14709-2|ZNF197 nc|ENSG00000186448|O14709-2|ZNF197 MULTI-MSMS UPN47_class_I_Rep_3 4 487.2350158691406 2 487.234907 972.455261 -0.28244 -0.00013762 0.23639 0.00011518 -0.046056 -2.244E-05 487.23495748668756 40.795 0.86155 44.032 43.624 44.485 3.2372 110 59 2 0 0 0 0.21527 3 8138 8138;8261;8300 19.257 3.4098 1 288060 55878 16781 35096 35114 64217;64218;64219 64217 -0.032067982361240865 YGPAHCLRIL 10 Unmodified _YGPAHCLRIL_ 0 0 0 L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|4|1|sense L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|4|1|sense L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 571.8081665039062 2 571.810593 1141.60663 NaN NaN NaN NaN NaN NaN NaN 63.331 1 66.841 66.341 67.341 3.5091 0 0 0 0.53105 1 14150 14150 1.8442 0 1 55879 15144 35097 35115 64220 64220 0.04149484590720931 YGPLLFAACF 10 Unmodified _YGPLLFAACF_ 0 0 0 REV__MER21A_dup1213|chr10:45987926-45988535:-|1.077240996875504|0.0856367126919691|3.65|151.0|22|1|anti-sense REV__MER21A_dup1213|chr10:45987926-45988535:-|1.077240996875504|0.0856367126919691|3.65|151.0|22|1|anti-sense MSMS UPN46_class_I_Rep_3 1 551.275634765625 2 551.275521 1100.53649 NaN NaN NaN NaN NaN NaN NaN 21.898 1 21.898 21.398 22.398 0 0 0 0 0.53105 1 2519 2519 4.3292 0 1 + 55880 31179 35098 35116 64221 64221 -0.009758137977769366 YGQQLKLSI 9 Unmodified _YGQQLKLSI_ 0 0 0 REV__ENST00000339594.8_1_7:72874035-72877331:-|nuORF REV__ENST00000339594.8_1_7:72874035-72877331:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 525.3025512695312 2 525.303124 1048.5917 0.34239 0.00017986 -0.46665 -0.00024514 -0.12426 -6.5274E-05 525.3030518066661 60.718 0.56378 64.099 63.801 64.365 3.3815 68 53 2 0 0 0 0.42249 1 14127 14127 6.7232 0.09279 1 200520 + 55881 21812 35099 35117 64222 64222 0.06934315994362805 YGRIEILSGF 10 Unmodified _YGRIEILSGF_ 0 0 0 ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF ENSG00000145740|ENST00000396591|SLC30A5 ENSG00000145740|ENST00000396591|SLC30A5 MULTI-MSMS UPN48_class_I_Rep_1 5 577.8143310546875 2 577.813856 1153.61316 0.47462 0.00027424 -0.018183 -1.0506E-05 0.45644 0.00026374 577.8137576477459 67.328 0.699 70.779 70.337 71.036 3.4516 79 46 2 0 0 0 0.40112 1 15437 15437 19.362 0 1 199340 55882 3409 35100 35118 64223 64223 0.04249701023104535 YGRIEILSGF 10 Unmodified _YGRIEILSGF_ 0 0 0 ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF ENSG00000145740|ENST00000396591|SLC30A5 ENSG00000145740|ENST00000396591|SLC30A5 MULTI-MSMS UPN48_class_I_Rep_2 6 577.8138427734375 2 577.813856 1153.61316 0.49485 0.00028593 -0.12237 -7.0708E-05 0.37248 0.00021523 577.813714277375 67.11 0.63326 70.607 70.234 70.867 3.4963 73 39 2 0 0 0 0.35325 2 15347 15347;15403 23.79 0 1 225910 55883 3409 35100 35118 64224;64225 64224 0.04249701023104535 YGRIEILSGF 10 Unmodified _YGRIEILSGF_ 0 0 0 ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF ENSG00000145740|ENST00000396591|SLC30A5 ENSG00000145740|ENST00000396591|SLC30A5 MULTI-MSMS UPN48_class_I_Rep_3 7 577.8140869140625 2 577.813856 1153.61316 0.52996 0.00030622 -0.2464 -0.00014237 0.28356 0.00016384 577.8135568597352 66.853 0.67463 70.36 70.104 70.778 3.5077 78 43 2 0 0 0 0.40112 1 15232 15232 19.362 0 1 187550 55884 3409 35100 35118 64226 64226 0.04249701023104535 YGRRQKRS 8 Unmodified _YGRRQKRS_ 0 0 0 MSTD_dup3122|chr6:87505514-87505885:-|1.0760758413380178|0.267634770456571|2.01|151.0|21|2|anti-sense MSTD_dup3122|chr6:87505514-87505885:-|1.0760758413380178|0.267634770456571|2.01|151.0|21|2|anti-sense MSTD_dup3122|chr6:87505514-87505885:-|1.0760758413380178|0.267634770456571|2.01|151.0|21|2|anti-sense MSMS UPN46_class_I_Rep_3 1 525.79931640625 2 525.799406 1049.58426 NaN NaN NaN NaN NaN NaN NaN 67.576 1 67.576 67.076 68.076 0 0 0 0 0.40625 1 15389 15389 2.3027 0 1 55885 16596 35101 35119 64227 64227 0.061450212373074464 YGRRWRRK 8 Unmodified _YGRRWRRK_ 0 0 0 nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 MULTI-MSMS UPN46_class_I_Rep_3 1 589.3438720703125 2 589.344315 1176.67408 0.54386 0.00032052 -2.3015 -0.0013564 -1.7577 -0.0010359 589.3428116850486 99.731 0.12712 99.731 99.632 99.759 0 19 15 2 0 0 0 0.82752 1 24309 24309 0.79363 0.19213 1 64475 55886 16839 35102 35120 64228 64228 0.09280695636539349 YGRRWRRK 8 Unmodified _YGRRWRRK_ 0 0 0 nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 nc|ENSG00000250423|Q9ULL0|KIAA1210 MSMS UPN46_class_I_Rep_3 1 589.343017578125 2 589.344315 1176.67408 NaN NaN NaN NaN NaN NaN NaN 86.352 1 86.352 85.852 86.852 0 0 0 0 0.40738 1 20643 20643 0.79363 0.19213 1 55887 16839 35102 35120 64229 64229 0.09280695636539349 YGSDQAWKGVS 11 Unmodified _YGSDQAWKGVS_ 0 0 0 REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|3|1|sense REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 599.2794799804688 2 599.280377 1196.5462 0.41165 0.00024669 -0.43957 -0.00026343 -0.027929 -1.6737E-05 599.2798372096987 58.49 0.44156 61.907 61.709 62.15 3.4171 50 28 2 0 0 0 0.31364 2 13536 13513;13536 14.405 0.88579 1 87901 + 55888 29585 35103 35121 64230;64231 64231 -0.044209542586713724 YGSDQAWKGVS 11 Unmodified _YGSDQAWKGVS_ 0 0 0 REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|3|1|sense REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 599.281005859375 2 599.280377 1196.5462 0.51967 0.00031143 -0.26135 -0.00015662 0.25832 0.0001548 599.2802681421664 58.726 0.36064 62.008 61.804 62.164 3.2818 31 20 2 0 0 0 0.50573 1 13592 13592 7.609 0.88579 1 73917 + 55889 29585 35103 35121 64232 64232 -0.044209542586713724 YGSDQAWKGVS 11 Unmodified _YGSDQAWKGVS_ 0 0 0 REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|3|1|sense REV__L1PA4_dup10557|chr15:30848622-30854753:-|11.297174400774804|0.0550652944282668|7.68|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 599.28076171875 2 599.280377 1196.5462 NaN NaN NaN NaN NaN NaN NaN 58.795 1 61.961 61.461 62.461 3.1658 0 0 0 0.38417 1 13689 13689 2.7352 0.23671 1 + 55890 29585 35103 35121 64233 64233 -0.044209542586713724 YGSQDSIWKN 10 Unmodified _YGSQDSIWKN_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS UPN47_class_I_Rep_1 2 599.2789306640625 2 599.280377 1196.5462 0.41165 0.00024669 -0.43957 -0.00026343 -0.027929 -1.6737E-05 599.2798372096987 58.49 0.44156 61.907 61.709 62.15 3.4171 50 28 2 0 0 0 0.54466 1 13487 13487 6.2058 0 1 87901 55891 5248 35104 35122 64234 64234 -0.044209542586713724 YGSYQCYCR 9 Unmodified _YGSYQCYCR_ 0 0 0 nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2;ENST00000476366.1_1_22:45937122-45946826:+|nuORF;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1;CON__ENSEMBL:ENSBTAP00000016046 nc|ENSG00000163520|P98095|FBLN2 nc|ENSG00000163520|P98095|FBLN2 MSMS UPN47_class_I_Rep_2 3 571.7223510742188 2 571.723326 1141.4321 NaN NaN NaN NaN NaN NaN NaN 117.91 1 121.4 120.9 121.9 3.4822 0 0 0 0.39598 1 28837 28837 1.6526 0.85899 1 + 55892 4013 35105 35123 64235 64235 -0.13295883616774518 YGTTGKKK 8 Unmodified _YGTTGKKK_ 0 0 0 REV__ENST00000450155.5_1_1:112142544-112147029:-|nuORF REV__ENST00000450155.5_1_1:112142544-112147029:-|nuORF MSMS UPN48_class_I_Rep_1 5 441.7334289550781 2 441.75581 881.497067 NaN NaN NaN NaN NaN NaN NaN 42.513 1 46.021 45.521 46.521 3.5079 0 0 0 0.40746 1 7872 7872 0.69038 0 1 + 55893 22330 35106 35124 64236 64236 0.05157802243036258 YGTTRSCIL 9 Unmodified _YGTTRSCIL_ 0 0 0 REV__ENSG00000087338|ENST00000282570|GMCL1 REV__ENSG00000087338|ENST00000282570|GMCL1 MSMS UPN48_class_I_Rep_1 5 507.2679138183594 2 507.257859 1012.50117 NaN NaN NaN NaN NaN NaN NaN 85.974 1 89.587 89.087 90.087 3.613 0 0 0 0.29868 1 20585 20585 10.824 1.4765 1 + 55894 17979 35107 35125 64237 64237 -0.004584763255365942 YGVFYFVH 8 Unmodified _YGVFYFVH_ 0 0 0 REV__L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|103|2|anti-sense REV__L1MC4a_dup1209|chr2:135577860-135579759:+|1.419436399394363|0.0252225697675629|5.81|151.0|103|2|anti-sense MSMS UPN48_class_I_Rep_3 7 516.2716674804688 2 516.252903 1030.49125 NaN NaN NaN NaN NaN NaN NaN 43.14 1 46.779 46.279 47.279 3.6395 0 0 0 0.40581 1 7992 7992 2.8892 0.31174 1 + 55895 26973 35108 35126 64238 64238 -0.0227729626863038 YGVHKIYNTL 10 Unmodified _YGVHKIYNTL_ 0 0 0 L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|139|2|anti-sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|139|2|anti-sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|139|2|anti-sense MSMS UPN48_class_I_Rep_1 5 604.32275390625 2 604.327131 1206.63971 NaN NaN NaN NaN NaN NaN NaN 46.237 1 49.757 49.257 50.257 3.5192 0 0 0 0.53105 1 9006 9006 1.6526 0.32309 1 55896 9436 35109 35127 64239 64239 0.04465389914412299 YGVKRLGKEVL 11 Unmodified _YGVKRLGKEVL_ 0 0 0 REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|174|3|sense REV__HERV17-int_dup444|chr6:166891602-166897615:+|2.7811986724753224|0.1787335990729805|3.96|151.0|174|3|sense MSMS UPN48_class_I_Rep_1 5 421.25946044921875 3 421.259079 1260.75541 NaN NaN NaN NaN NaN NaN NaN 75.777 1 79.276 78.776 79.776 3.4996 0 0 0 0.38417 1 17973 17973 1.2148 0.80657 1 + 55897 23556 35110 35128 64240 64240 0.1354591376530152 YGVRWLHVE 9 Unmodified _YGVRWLHVE_ 0 0 0 REV__HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|37|1|sense REV__HERV9NC-int_dup97|chr5:76908148-76914258:+|41.88338359514404|0.082986232422172|8.98|151.0|37|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 579.8069458007812 2 579.806365 1157.59818 0.39936 0.00023155 -0.069832 -4.0489E-05 0.32953 0.00019106 579.8062786662144 40.252 1.4894 43.902 43.478 44.967 3.6509 373 143 4 0 0 0 0.42249 2 7356 7356;7382 6.7232 6.7232 1 921200 + 55898 23632 35111 35129 64241;64242 64241 0.025682539457193343 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_1 5 563.79833984375 2 563.800217 1125.58588 NaN NaN NaN NaN NaN NaN NaN 71.599 1 75.065 74.565 75.565 3.466 0 0 0 0.53105 1 16751 16751 6.2058 1.6769 1 + 55899 25939 35112 35130 64243 64243 0.02811217482712891 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MSMS UPN48_class_I_Rep_1 5 563.8009643554688 2 563.800217 1125.58588 NaN NaN NaN NaN NaN NaN NaN 71.75 1 75.216 74.716 75.716 3.466 0 0 0 0.53105 1 16797 16797 10.074 1.3285 1 + 55900 25939 35112 35130 64244 64244 0.02811217482712891 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 563.8012084960938 2 563.800217 1125.58588 0.49258 0.00027772 -0.41237 -0.00023249 0.080215 4.5225E-05 563.8001060271886 69.213 0.27473 72.735 72.51 72.784 3.5216 39 21 2 0 0 0 0.54466 2 15977 15977;16030 6.2058 1.8765 1 132470 + 55901 25939 35112 35130 64245;64246 64245 0.02811217482712891 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 563.2671508789062 2 563.800217 1125.58588 0.49109 0.00027688 0.075688 4.2673E-05 0.56678 0.00031955 564.3016935161359 69.352 0.17051 72.873 72.792 72.963 3.5216 20 13 2 0 0 0 0.84575 1 16044 16044 3.5965 0.60125 1 92512 + 55902 25939 35112 35130 64247 64247 0.02811217482712891 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 563.769775390625 2 563.800217 1125.58588 0.49504 0.00027911 -0.36269 -0.00020449 0.13235 7.462E-05 563.8002000789887 69.017 0.66317 72.527 72.222 72.885 3.5094 62 47 2 0 0 0 0.84575 1 15936 15936 6.2058 0.9089 1 76166 + 55903 25939 35112 35130 64248 64248 0.02811217482712891 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 563.800217 1125.58588 0.4126 0.00023263 2.2328 0.0012589 2.6454 0.0014915 563.8013824923701 73.226 0.089005 73.226 73.194 73.283 0 0.18383 0.0018709 NaN 3.5965 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 126160 + 55904 25939 35112 35130 0.02811217482712891 YGVWAGLLTF 10 Unmodified _YGVWAGLLTF_ 0 0 0 REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense REV__L1MB4_dup1509|chr3:45729385-45731251:-|2.7802524230892813|0.3117864761703887|3.16|151.0|122|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 563.800217 1125.58588 0.49453 0.00027882 0.3396 0.00019147 0.83413 0.00047028 564.3023779719092 69.514 0.044197 73.027 73.007 73.052 3.5128 -0.015206 -0.00026388 NaN 3.5965 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 60427 + 55905 25939 35112 35130 0.02811217482712891 YGVYPGVEL 9 Unmodified _YGVYPGVEL_ 0 0 0 L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 498.75531005859375 2 498.755475 995.496398 0.18333 9.1437E-05 0.15666 7.8135E-05 0.33999 0.00016957 498.7554670534669 76.094 0.4616 79.497 79.19 79.652 3.4034 61 43 2 0 0 0 0.25207 1 18799 18799 16.942 0 1 84530 55906 10651 35113 35131 64249 64249 -0.001530371966509847 YGVYPGVEL 9 Unmodified _YGVYPGVEL_ 0 0 0 L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 498.755475 995.496398 0.25346 0.00012641 0.0030502 1.5213E-06 0.25651 0.00012793 498.7553719668758 76.163 0.64062 79.485 79.203 79.843 3.3216 0.00052225 -8.6649E-05 NaN 16.942 99 63 2 NaN NaN NaN NaN 0 NaN NaN 0 94662 55907 10651 35113 35131 -0.001530371966509847 YGVYPGVEL 9 Unmodified _YGVYPGVEL_ 0 0 0 L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense L1MB5_dup8291|chr17:72689401-72689951:+|1.1788553175150742|0.006813719307113|7.43|149.0|20|1|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 498.755475 995.496398 0.24501 0.0001222 0.16592 8.2755E-05 0.41093 0.00020496 498.755497474217 76.214 0.50188 79.471 79.245 79.746 3.2573 -0.013292 7.5818E-05 NaN 16.942 82 51 2 NaN NaN NaN NaN 0 NaN NaN 0 109500 55908 10651 35113 35131 -0.001530371966509847 YGWERHLF 8 Unmodified _YGWERHLF_ 0 0 0 REV__ENST00000593148.1_1_17:40870451-40871187:-|nuORF REV__ENST00000593148.1_1_17:40870451-40871187:-|nuORF MSMS UPN46_class_I_Rep_3 1 554.2730102539062 2 554.272158 1106.52976 NaN NaN NaN NaN NaN NaN NaN 92.883 1 92.883 92.383 93.383 0 0 0 0 0.40604 1 22495 22495 2.5775 0 1 + 55909 23184 35114 35132 64250 64250 -0.019239906341226742 YGYLHCYL 8 Unmodified _YGYLHCYL_ 0 0 0 REV__ENST00000473662.1_1_X:109462834-109560930:-|nuORF REV__ENST00000473662.1_1_X:109462834-109560930:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.2364501953125 2 516.236396 1030.45824 NaN NaN NaN NaN NaN NaN NaN 29.583 1 33.075 32.575 33.575 3.4923 0 0 0 0.40738 1 4758 4758 0.79363 0 1 + 55910 18181 35115 35133 64251 64251 -0.05577246382972589 YGYVDMGKIL 10 Unmodified _YGYVDMGKIL_ 0 0 0 REV__ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant REV__ANAPC7|p.R357Qfs*15|1|0.2|ENSG00000196510|chr12:110381916-110381917|-/T|frameshift_variant MSMS UPN48_class_I_Rep_2 6 579.7982177734375 2 579.796817 1157.57908 NaN NaN NaN NaN NaN NaN NaN 86.123 1 89.829 89.329 90.329 3.7058 0 0 0 0.53105 1 20506 20506 1.6526 0 1 + 55911 17245 35116 35134 64252 64252 0.006595365398425201 YHALLSELL 9 Unmodified _YHALLSELL_ 0 0 0 REV__nc|ENSG00000103091|Q6PJI9-4|WDR59 REV__nc|ENSG00000103091|Q6PJI9-4|WDR59 MSMS UPN46_class_I_Rep_3 1 529.7992553710938 2 529.797675 1057.5808 NaN NaN NaN NaN NaN NaN NaN 17.361 1 17.361 16.861 17.861 0 0 0 0 0.40038 1 1357 1357 0.6015 0 1 + 55912 18214 35117 35135 64253 64253 0.054309136201027286 YHARITWL 8 Unmodified _YHARITWL_ 0 0 0 REV__HAL1_dup14771|chr10:74260797-74261952:-|1.2738581542432277|0.012806298073374|6.64|151.0|34|3|sense REV__HAL1_dup14771|chr10:74260797-74261952:-|1.2738581542432277|0.012806298073374|6.64|151.0|34|3|sense MSMS UPN46_class_I_Rep_3 1 530.2206420898438 2 530.290351 1058.56615 NaN NaN NaN NaN NaN NaN NaN 119.94 1 119.94 119.44 120.44 0 0 0 0 0.40738 1 29833 29833 0.79363 0.10326 1 + 55913 23355 35118 35136 64254 64254 0.03920886262608292 YHATLLWP 8 Unmodified _YHATLLWP_ 0 0 0 ENST00000527564.1_1_4:102269031-102269525:+|nuORF ENST00000527564.1_1_4:102269031-102269525:+|nuORF ENST00000527564.1_1_4:102269031-102269525:+|nuORF MSMS UPN47_class_I_Rep_3 4 500.7658386230469 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 70.603 1 73.815 73.315 74.315 3.2113 0 0 0 0.40738 1 17281 17281 0.79363 0 1 55914 7272 35119 35137 64255 64255 0.018023926227101583 YHCHCCYLC 9 Unmodified _YHCHCCYLC_ 0 0 0 L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 572.696533203125 2 572.6952 1143.37585 NaN NaN NaN NaN NaN NaN NaN 75.144 1 75.144 74.644 75.644 0 0 0 0 0.40038 1 17454 17454 0.6015 0 1 55915 8917 35120 35138 64256 64256 -0.19010551049450441 YHCHCCYLC 9 Unmodified _YHCHCCYLC_ 0 0 0 L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 572.6964111328125 2 572.6952 1143.37585 NaN NaN NaN NaN NaN NaN NaN 76.132 1 76.132 75.632 76.632 0 0 0 0 0.40038 1 17742 17742 0.6015 0 1 55916 8917 35120 35138 64257 64257 -0.19010551049450441 YHCHCCYLC 9 Unmodified _YHCHCCYLC_ 0 0 0 L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 572.696533203125 2 572.6952 1143.37585 NaN NaN NaN NaN NaN NaN NaN 76.299 1 76.299 75.799 76.799 0 0 0 0 0.40038 1 17789 17789 0.6015 0 1 55917 8917 35120 35138 64258 64258 -0.19010551049450441 YHCHCCYLC 9 Unmodified _YHCHCCYLC_ 0 0 0 L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense L1M4_dup8058|chr7:102409873-102410658:-|1.5538995887128544|0.0653705678421667|4.57|151.0|25|1|anti-sense MSMS UPN46_class_I_Rep_3 1 572.7965087890625 2 572.6952 1143.37585 NaN NaN NaN NaN NaN NaN NaN 101.91 1 101.91 101.41 102.41 0 0 0 0 0.40038 1 24866 24866 0.6015 0.076735 1 55918 8917 35120 35138 64259 64259 -0.19010551049450441 YHCLAELPTG 10 Unmodified _YHCLAELPTG_ 0 0 0 nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1 nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 MSMS UPN47_class_I_Rep_1 2 552.2653198242188 2 552.263142 1102.51173 NaN NaN NaN NaN NaN NaN NaN 101.68 1 105.47 104.97 105.97 3.7888 0 0 0 0.53105 1 25062 25062 3.9444 0.3479 1 55919 1317 35121 35139 64260 64260 -0.03542493671147895 YHCWIRWP 8 Unmodified _YHCWIRWP_ 0 0 0 REV__Charlie1a_dup490|chr1:243227010-243227814:-|1.081326769992676|0.0385836484818107|4.81|151.0|59|3|anti-sense REV__Charlie1a_dup490|chr1:243227010-243227814:-|1.081326769992676|0.0385836484818107|4.81|151.0|59|3|anti-sense MSMS UPN47_class_I_Rep_3 4 580.7085571289062 2 580.776554 1159.53855 NaN NaN NaN NaN NaN NaN NaN 21.437 1 24.786 24.286 25.286 3.3496 0 0 0 0.40738 1 2399 2399 0.79363 0 1 + 55920 17336 35122 35140 64261 64261 -0.03483340269258406 YHDSALWP 8 Unmodified _YHDSALWP_ 0 0 0 REV__LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|14|3|sense REV__LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|14|3|sense MSMS UPN46_class_I_Rep_3 1 494.7197570800781 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 111.73 1 111.73 111.23 112.23 0 0 0 0 0.40738 1 27558 27558 0.79363 0 1 + 55921 31004 35123 35141 64262 64262 -0.04919361170709635 YHDSALWP 8 Unmodified _YHDSALWP_ 0 0 0 REV__LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|14|3|sense REV__LTR75_1_dup126|chr22:45157727-45158231:-|1.473779961316379|0.296260032153761|2.31|150.0|14|3|sense MSMS UPN47_class_I_Rep_1 2 494.7179260253906 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 117.52 1 121.13 120.63 121.63 3.6036 0 0 0 0.40738 1 29138 29138 0.79363 0 1 + 55922 31004 35123 35141 64263 64263 -0.04919361170709635 YHELKYRL 8 Unmodified _YHELKYRL_ 0 0 0 REV__L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|47|2|sense REV__L1MEf_dup6034|chr8:124334792-124337384:+|2.109494115270322|0.0438465973630623|5.59|151.0|47|2|sense MSMS UPN48_class_I_Rep_1 5 561.309326171875 2 561.308741 1120.60293 NaN NaN NaN NaN NaN NaN NaN 42.355 1 45.863 45.363 46.363 3.5079 0 0 0 0.40746 1 7824 7824 0.69038 0 1 + 55923 28667 35124 35142 64264 64264 0.047451380885149774 YHEYRSVIH 9 Unmodified _YHEYRSVIH_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|3|1|sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|3|1|sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 602.2994995117188 2 602.298904 1202.58326 NaN NaN NaN NaN NaN NaN NaN 22.945 1 26.506 26.006 27.006 3.5605 0 0 0 0.4007 1 2314 2314 0.52476 0 1 55924 12091 35125 35143 64265 64265 -0.009932379222391319 YHFAKLKI 8 Unmodified _YHFAKLKI_ 0 0 0 REV__L1MA4_dup1564|chr3:36980562-36981017:-|1.1912228808612195|0.0810183173563972|3.88|151.0|14|3|sense REV__L1MA4_dup1564|chr3:36980562-36981017:-|1.1912228808612195|0.0810183173563972|3.88|151.0|14|3|sense MSMS UPN47_class_I_Rep_3 4 510.303955078125 2 510.30547 1018.59639 NaN NaN NaN NaN NaN NaN NaN 113.42 1 116.92 116.42 117.42 3.4963 0 0 0 0.40738 1 27822 27822 0.79363 0 1 + 55925 25137 35126 35144 64266 64266 0.08783244927781197 YHFCCCCCCY 10 Unmodified _YHFCCCCCCY_ 0 0 0 L1MC1_dup159|chr1:51256069-51256685:-|1.3865848408660189|0.0116672586139169|6.89|151.0|36|1|anti-sense L1MC1_dup159|chr1:51256069-51256685:-|1.3865848408660189|0.0116672586139169|6.89|151.0|36|1|anti-sense L1MC1_dup159|chr1:51256069-51256685:-|1.3865848408660189|0.0116672586139169|6.89|151.0|36|1|anti-sense MSMS UPN46_class_I_Rep_3 1 624.1673583984375 2 624.167104 1246.31965 NaN NaN NaN NaN NaN NaN NaN 114.56 1 114.56 114.06 115.06 0 0 0 0 0.53105 1 28316 28316 0 0 1 55926 11117 35127 35145 64267 64267 -0.29365263272779885 YHFIFLFI 8 Unmodified _YHFIFLFI_ 0 0 0 REV__ENSG00000196329|ENST00000358647|GIMAP5 REV__ENSG00000196329|ENST00000358647|GIMAP5 MULTI-MSMS UPN48_class_I_Rep_2 6 550.30322265625 2 550.302396 1098.59024 0.48369 0.00026618 -1.8523 -0.0010193 -1.3686 -0.00075316 550.302329496096 74.465 0.048737 78.055 78.026 78.075 3.59 6 4 2 0 0 0 0.82752 1 17527 17527 6.3541 0 1 55800 + 55927 21028 35128 35146 64268 64268 0.044887266962632566 YHFISKCIF 9 Unmodified _YHFISKCIF_ 0 0 0 L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|82|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|82|2|anti-sense L1MC5a_dup13661|chr15:30663226-30664755:-|2.1989217437702746|0.0451263917543036|5.61|151.0|82|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.3109130859375 2 579.294245 1156.57394 0.46754 0.00027084 0.50457 0.00029229 0.97211 0.00056314 579.2940187085055 67.79 0.92661 71.241 70.705 71.631 3.4517 121 70 3 0 0 0 0.46434 1 15643 15643 4.3292 0.73274 1 185530 55928 11712 35129 35147 64269 64269 0.0019127746786580246 YHFLWFPE 8 Unmodified _YHFLWFPE_ 0 0 0 REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|87|1|anti-sense REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|87|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.7703247070312 2 569.77146 1137.52837 -0.053688 -3.059E-05 -0.55056 -0.00031369 -0.60425 -0.00034428 569.7712364428137 36.546 0.10102 40.216 40.154 40.255 3.6692 10 8 2 0 0 0 0.82752 1 6838 6838 0.79363 0 1 33953 + 55929 32789 35130 35148 64270 64270 -0.03489624722874396 YHFPEAHW 8 Unmodified _YHFPEAHW_ 0 0 0 REV__L1MD2_dup10578|chr22:20556600-20557103:-|1.2241406358612803|0.0626564980027693|4.29|151.0|27|2|anti-sense REV__L1MD2_dup10578|chr22:20556600-20557103:-|1.2241406358612803|0.0626564980027693|4.29|151.0|27|2|anti-sense MSMS UPN46_class_I_Rep_3 1 543.7435913085938 2 543.743234 1085.47191 NaN NaN NaN NaN NaN NaN NaN 117.48 1 117.48 116.98 117.98 0 0 0 0 0.40738 1 29121 29121 0.79363 0 1 + 55930 27386 35131 35149 64271 64271 -0.06740252559552573 YHFQRMNH 8 Unmodified _YHFQRMNH_ 0 0 0 ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2 ENSG00000198203|ENST00000251481|SULT1C2 ENSG00000198203|ENST00000251481|SULT1C2 MSMS UPN47_class_I_Rep_2 3 567.2393798828125 2 566.758892 1131.50323 NaN NaN NaN NaN NaN NaN NaN 111.88 1 115.4 114.9 115.9 3.5226 0 0 0 0.40746 1 27247 27247 0.69038 0 1 55931 5419 35132 35150 64272 64272 -0.05726002797086949 YHFTDLEGSF 10 Unmodified _YHFTDLEGSF_ 0 0 0 REV__L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|74|2|anti-sense REV__L1MEd_dup21151|chr22:39153797-39155148:+|1.1294177174016164|0.0201408368469364|5.81|151.0|74|2|anti-sense MSMS UPN46_class_I_Rep_3 1 405.8499755859375 3 405.848744 1214.5244 NaN NaN NaN NaN NaN NaN NaN 22.352 1 22.352 21.852 22.852 0 0 0 0 0.53105 1 2640 2640 2.086 0.49373 1 + 55932 28567 35133 35151 64273 64273 -0.07427759007237 YHFVLPPAAN 10 Unmodified _YHFVLPPAAN_ 0 0 0 L1ME2z_dup6493|chr19:18481675-18482308:-|1.052068277035559|0.051939697677445|4.34|151.0|22|1|anti-sense L1ME2z_dup6493|chr19:18481675-18482308:-|1.052068277035559|0.051939697677445|4.34|151.0|22|1|anti-sense L1ME2z_dup6493|chr19:18481675-18482308:-|1.052068277035559|0.051939697677445|4.34|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.7965087890625 2 564.795466 1127.57638 NaN NaN NaN NaN NaN NaN NaN 27.74 1 31.496 30.996 31.996 3.7555 0 0 0 0.53105 1 3678 3678 1.8442 0.36234 1 55933 12578 35134 35152 64274 64274 0.01769449197195172 YHHDCLEMFV 10 Unmodified _YHHDCLEMFV_ 0 0 0 REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|52|2|anti-sense REV__L1MB8_dup11327|chr11:117081796-117082792:+|10.3171820108907|0.0319237655135788|8.34|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_3 4 647.275146484375 2 647.273183 1292.53181 NaN NaN NaN NaN NaN NaN NaN 44.848 1 48.092 47.592 48.592 3.2441 0 0 0 0.53105 1 9444 9444 1.6526 0 1 + 55934 26345 35135 35153 64275 64275 -0.10275066002827771 YHHIWCCF 8 Unmodified _YHHIWCCF_ 0 0 0 REV__L1ME2_dup1934|chr2:171928807-171930164:-|2.264233900576529|0.0662928386290178|5.09|151.0|93|3|anti-sense REV__L1ME2_dup1934|chr2:171928807-171930164:-|2.264233900576529|0.0662928386290178|5.09|151.0|93|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 555.2140502929688 2 554.728215 1107.44188 0.63362 0.00035149 0.26272 0.00014574 0.89635 0.00049723 554.7280467867643 116.22 0.022858 119.72 119.7 119.73 3.4965 4 2 2 0 0 0 0.82752 1 28368 28368 0.79363 0 1 13007 + 55935 27844 35136 35154 64276 64276 -0.10754650820740608 YHHLWMEVF 9 Unmodified _YHHLWMEVF_ 0 0 0 REV__ENST00000433118.5_1_2:130917171-130932539:-|nuORF REV__ENST00000433118.5_1_2:130917171-130932539:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 631.2957763671875 2 631.294776 1260.575 0.37148 0.00023451 1.8349 0.0011584 2.2064 0.0013929 631.2957647799452 57.518 0.059174 60.686 60.663 60.722 3.1681 6 5 2 0 0 0 0.45688 1 13302 13302 4.756 0.42677 1 292660 + 55936 19195 35137 35155 64277 64277 -0.04486508163245162 YHHNHHLF 8 Unmodified _YHHNHHLF_ 0 0 0 L1MB5_dup5464|chr10:38097781-38098402:-|1.011264615351425|0.0943980072055461|3.42|151.0|22|1|anti-sense L1MB5_dup5464|chr10:38097781-38098402:-|1.011264615351425|0.0943980072055461|3.42|151.0|22|1|anti-sense L1MB5_dup5464|chr10:38097781-38098402:-|1.011264615351425|0.0943980072055461|3.42|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_2 3 552.757568359375 2 552.759749 1103.50495 NaN NaN NaN NaN NaN NaN NaN 115.37 1 118.87 118.37 119.37 3.5039 0 0 0 0.40604 1 28126 28126 2.5775 0.27475 1 55937 10624 35138 35156 64278 64278 -0.04266625716809358 YHHNHHLF 8 Unmodified _YHHNHHLF_ 0 0 0 L1MB5_dup5464|chr10:38097781-38098402:-|1.011264615351425|0.0943980072055461|3.42|151.0|22|1|anti-sense L1MB5_dup5464|chr10:38097781-38098402:-|1.011264615351425|0.0943980072055461|3.42|151.0|22|1|anti-sense L1MB5_dup5464|chr10:38097781-38098402:-|1.011264615351425|0.0943980072055461|3.42|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 552.7622680664062 2 552.759749 1103.50495 NaN NaN NaN NaN NaN NaN NaN 74.737 1 78.303 77.803 78.803 3.5659 0 0 0 0.40738 1 17520 17520 0.79363 0 1 55938 10624 35138 35156 64279 64279 -0.04266625716809358 YHHNPVLEY 9 Unmodified _YHHNPVLEY_ 0 0 0 L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 586.2797241210938 2 586.28018 1170.54581 NaN NaN NaN NaN NaN NaN NaN 72.357 1 75.654 75.154 76.154 3.2971 0 0 0 0.2408 1 17734 17734 13.906 3.8321 1 55939 10796 35139 35157 64280 64280 -0.03264329187868498 YHHNPVLEY 9 Unmodified _YHHNPVLEY_ 0 0 0 L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 586.2789916992188 2 586.28018 1170.54581 NaN NaN NaN NaN NaN NaN NaN 72.494 1 75.791 75.291 76.291 3.2971 0 0 0 0.38784 1 17773 17773 3.5965 0.70727 1 55940 10796 35139 35157 64281 64281 -0.03264329187868498 YHHNPVLEY 9 Unmodified _YHHNPVLEY_ 0 0 0 L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.280029296875 2 586.28018 1170.54581 0.45365 0.00026597 -1.0449 -0.00061262 -0.59129 -0.00034666 586.2794511100268 72.353 0.36397 75.58 75.441 75.805 3.2271 38 28 2 0 0 0 0.47197 1 17824 17824 3.5965 0 1 94846 55941 10796 35139 35157 64282 64282 -0.03264329187868498 YHHVYIPY 8 Unmodified _YHHVYIPY_ 0 0 0 L1MA8_dup2671|chr4:173304425-173306727:-|2.5634218932835213|0.1581877430832527|4.02|151.0|124|2|anti-sense L1MA8_dup2671|chr4:173304425-173306727:-|2.5634218932835213|0.1581877430832527|4.02|151.0|124|2|anti-sense L1MA8_dup2671|chr4:173304425-173306727:-|2.5634218932835213|0.1581877430832527|4.02|151.0|124|2|anti-sense MSMS UPN47_class_I_Rep_1 2 546.266845703125 2 546.269084 1090.52362 NaN NaN NaN NaN NaN NaN NaN 118.22 1 121.83 121.33 122.33 3.6036 0 0 0 0.40581 1 29332 29332 2.8892 0.31174 1 55942 10048 35140 35158 64283 64283 -0.01802508865625896 YHHYFYDY 8 Unmodified _YHHYFYDY_ 0 0 0 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 MULTI-SECPEP UPN47_class_I_Rep_1 2 604.84765625 2 604.245806 1206.47706 0.38702 0.00023386 0.083373 5.0378E-05 0.47039 0.00028423 604.7475752307595 71.086 0.043892 74.461 74.44 74.484 3.3751 7 4 2 0 0 0 0.72333 1 17307 17307 0.79363 0.10326 1 41764 55943 16803 35141 35159 64284 64284 -0.11791993487554464 YHIHFLKPVI 10 Unmodified _YHIHFLKPVI_ 0 0 0 REV__L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|32|2|sense REV__L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|32|2|sense MSMS UPN47_class_I_Rep_1 2 633.8701782226562 2 633.871508 1265.72846 NaN NaN NaN NaN NaN NaN NaN 86.157 1 89.773 89.273 90.273 3.6153 0 0 0 0.53105 1 21520 21520 0.45834 0 1 + 55944 26928 35142 35160 64285 64285 0.10622849944729751 YHIHQNGY 8 Unmodified _YHIHQNGY_ 0 0 0 L1ME3B_dup7863|chr20:32424792-32425725:-|2.006591963305916|0.0391311137780745|5.68|151.0|13|2|sense L1ME3B_dup7863|chr20:32424792-32425725:-|2.006591963305916|0.0391311137780745|5.68|151.0|13|2|sense L1ME3B_dup7863|chr20:32424792-32425725:-|2.006591963305916|0.0391311137780745|5.68|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.2389526367188 2 516.238316 1030.46208 -0.31286 -0.00016151 1.813 0.00093594 1.5001 0.00077443 516.2392720066159 32.385 0.66321 35.84 35.591 36.254 3.4547 71 47 2 0 0 0 0.82752 1 5577 5577 5.7604 0.52976 1 62841 55945 12735 35143 35161 64286 64286 -0.0519344056490354 YHIMRGYL 8 Unmodified _YHIMRGYL_ 0 0 0 REV__L1PA14_dup1462|chr7:92757152-92759013:-|3.958898762229401|0.0396687401655551|6.64|151.0|66|1|anti-sense REV__L1PA14_dup1462|chr7:92757152-92759013:-|3.958898762229401|0.0396687401655551|6.64|151.0|66|1|anti-sense MSMS UPN47_class_I_Rep_3 4 526.7711791992188 2 526.770937 1051.52732 NaN NaN NaN NaN NaN NaN NaN 24.943 1 28.294 27.794 28.794 3.3509 0 0 0 0.40738 1 3428 3428 0.79363 0 1 + 55946 29144 35144 35162 64287 64287 0.0036183763659209944 YHISALYV 8 Unmodified _YHISALYV_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MSMS UPN48_class_I_Rep_1 5 483.646484375 2 483.258185 964.501818 NaN NaN NaN NaN NaN NaN NaN 92.816 1 96.44 95.94 96.94 3.624 0 0 0 0.40738 1 22301 22301 0.79363 0 1 55947 1620 35145 35163 64288 64288 0.01814686385796449 YHIWKLNH 8 Unmodified _YHIWKLNH_ 0 0 0 L1PA13_dup4697|chr9:92696358-92697321:-|2.5374940700493696|0.0085008016830413|8.22|151.0|2|1|sense L1PA13_dup4697|chr9:92696358-92697321:-|2.5374940700493696|0.0085008016830413|8.22|151.0|2|1|sense L1PA13_dup4697|chr9:92696358-92697321:-|2.5374940700493696|0.0085008016830413|8.22|151.0|2|1|sense MSMS UPN47_class_I_Rep_2 3 555.7958374023438 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 19.684 1 23.081 22.581 23.581 3.3963 0 0 0 0.40746 1 1903 1903 0.69038 0 1 55948 13759 35146 35164 64289 64289 0.026642886369018015 YHIYTQFVSC 10 Unmodified _YHIYTQFVSC_ 0 0 0 L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|53|2|anti-sense L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|53|2|anti-sense L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 630.7877197265625 2 630.789524 1259.56449 -0.060072 -3.7893E-05 -0.69513 -0.00043848 -0.7552 -0.00047637 630.7890133811709 14.785 0.33788 18.26 18.151 18.489 3.475 68 36 3 0 0 0 0.56354 1 671 671 1.3295 0.13619 1 58908 55949 12401 35147 35165 64290 64290 -0.05490535608305436 YHIYTQFVSC 10 Unmodified _YHIYTQFVSC_ 0 0 0 L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|53|2|anti-sense L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|53|2|anti-sense L1ME1_dup3730|chr2:99387973-99388890:-|1.0220558807349365|0.2222368962454|2.2|151.0|53|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 631.2919921875 2 630.789524 1259.56449 -0.40473 -0.0002553 -0.62712 -0.00039558 -1.0319 -0.00065088 630.7890417170156 14.985 0.19516 18.35 18.25 18.445 3.3659 39 23 2 0 0 0 0.56078 1 693 693 3.2813 0.28607 1 44426 55950 12401 35147 35165 64291 64291 -0.05490535608305436 YHKIHYFE 8 Unmodified _YHKIHYFE_ 0 0 0 BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|56|1|anti-sense BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|56|1|anti-sense BLACKJACK_dup1313|chr9:77824481-77825863:-|1.8456396978717948|0.031842473943551|5.86|151.0|56|1|anti-sense MSMS UPN48_class_I_Rep_2 6 568.7793579101562 2 568.779816 1135.54508 NaN NaN NaN NaN NaN NaN NaN 24.531 1 28.171 27.671 28.671 3.6397 0 0 0 0.40746 1 2864 2864 0.69038 0 1 55951 414 35148 35166 64292 64292 -0.017271238369403363 YHLHQPFVA 9 Unmodified _YHLHQPFVA_ 0 0 0 ENST00000438101.1_1_X:49431298-49432372:-|nuORF ENST00000438101.1_1_X:49431298-49432372:-|nuORF ENST00000438101.1_1_X:49431298-49432372:-|nuORF MSMS UPN47_class_I_Rep_3 4 556.2882690429688 2 556.287808 1110.56106 NaN NaN NaN NaN NaN NaN NaN 84.528 1 87.889 87.389 88.389 3.3615 0 0 0 0.40038 1 21216 21216 0.6015 0 1 55952 6761 35149 35167 64293 64293 0.010205823999967834 YHLILFLEV 9 Unmodified _YHLILFLEV_ 0 0 0 REV__L1ME4b_dup6964|chr5:131321031-131321379:+|1.5879018982350936|0.0115536160416488|7.1|151.0|21|2|anti-sense REV__L1ME4b_dup6964|chr5:131321031-131321379:+|1.5879018982350936|0.0115536160416488|7.1|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 573.8316040039062 2 573.831517 1145.64848 NaN NaN NaN NaN NaN NaN NaN 88.313 1 92.124 91.624 92.624 3.8104 0 0 0 0.40038 1 20960 20960 0.6015 0 1 + 55953 28304 35150 35168 64294 64294 0.08148363550890281 YHLLRFEMWG 10 Unmodified _YHLLRFEMWG_ 0 0 0 REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H MULTI-MSMS UPN47_class_I_Rep_1 2 451.2264099121094 3 451.225381 1350.65431 -0.36814 -0.00016611 1.7168 0.00077465 1.3486 0.00060854 451.226062409164 34.141 0.18917 37.827 37.733 37.922 3.6859 17 12 2 0 0 0 0.56433 1 6112 6112 0.77653 0.27058 1 60031 + 55954 20527 35151 35169 64295 64295 -0.006988612090708557 YHLLWKWR 8 Unmodified _YHLLWKWR_ 0 0 0 REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2 REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2 MSMS UPN48_class_I_Rep_2 6 601.333740234375 2 601.335093 1200.65563 NaN NaN NaN NaN NaN NaN NaN 94.46 1 98.236 97.736 98.736 3.7761 0 0 0 0.40738 1 22460 22460 0.79363 0.19213 1 + 55955 18370 35152 35170 64296 64296 0.06333140941956117 YHLMLTGEP 9 Unmodified _YHLMLTGEP_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MSMS UPN47_class_I_Rep_3 4 530.76025390625 2 530.760235 1059.50592 NaN NaN NaN NaN NaN NaN NaN 37.809 1 41.051 40.551 41.551 3.2414 0 0 0 0.39428 1 7291 7291 2.0598 0 1 + 55956 19678 35153 35171 64297 64297 -0.02145592182796463 YHLMRVRN 8 Unmodified _YHLMRVRN_ 0 0 0 L1PA8_dup1741|chr3:196911836-196912496:+|3.2468135315418296|0.1397967088856646|4.54|151.0|8|2|sense L1PA8_dup1741|chr3:196911836-196912496:+|3.2468135315418296|0.1397967088856646|4.54|151.0|8|2|sense L1PA8_dup1741|chr3:196911836-196912496:+|3.2468135315418296|0.1397967088856646|4.54|151.0|8|2|sense MSMS UPN48_class_I_Rep_1 5 544.791015625 2 544.792735 1087.57092 NaN NaN NaN NaN NaN NaN NaN 24.776 1 28.342 27.842 28.842 3.5667 0 0 0 0.40738 1 2784 2784 0.79363 0 1 55957 14926 35154 35172 64298 64298 0.030634471337407376 YHLMRVRN 8 Unmodified _YHLMRVRN_ 0 0 0 L1PA8_dup1741|chr3:196911836-196912496:+|3.2468135315418296|0.1397967088856646|4.54|151.0|8|2|sense L1PA8_dup1741|chr3:196911836-196912496:+|3.2468135315418296|0.1397967088856646|4.54|151.0|8|2|sense L1PA8_dup1741|chr3:196911836-196912496:+|3.2468135315418296|0.1397967088856646|4.54|151.0|8|2|sense MSMS UPN48_class_I_Rep_2 6 544.7922973632812 2 544.792735 1087.57092 NaN NaN NaN NaN NaN NaN NaN 112.29 1 115.95 115.45 116.45 3.6648 0 0 0 0.40604 1 26745 26745 2.5775 0 1 55958 14926 35154 35172 64299 64299 0.030634471337407376 YHLTKLAI 8 Unmodified _YHLTKLAI_ 0 0 0 L1MC5a_dup4146|chr4:40229680-40230040:-|1.422534554421616|0.0043468008141067|8.35|151.0|22|2|anti-sense L1MC5a_dup4146|chr4:40229680-40230040:-|1.422534554421616|0.0043468008141067|8.35|151.0|22|2|anti-sense L1MC5a_dup4146|chr4:40229680-40230040:-|1.422534554421616|0.0043468008141067|8.35|151.0|22|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 480.2738952636719 2 479.789653 957.564752 0.13711 6.5784E-05 -0.5097 -0.00024455 -0.37259 -0.00017876 479.7894678824832 42.692 0.54804 46.333 46.04 46.588 3.6415 45 41 2 0 0 0 0.72333 1 7779 7779 4.756 4.756 1 67341 55959 11743 35155 35173 64300 64300 0.08427252173828492 YHLWQPFH 8 Unmodified _YHLWQPFH_ 0 0 0 REV__L1MB3_dup2400|chr2:161189800-161190905:+|2.059908435881616|0.1061965539682202|4.28|151.0|63|2|anti-sense REV__L1MB3_dup2400|chr2:161189800-161190905:+|2.059908435881616|0.1061965539682202|4.28|151.0|63|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.5458984375 2 564.274701 1126.53485 NaN NaN NaN NaN NaN NaN NaN 23.1 1 26.661 26.161 27.161 3.5605 0 0 0 0.40746 1 2357 2357 0.69038 0 1 + 55960 25867 35156 35174 64301 64301 -0.02335686771471046 YHMTQQSHCC 10 Unmodified _YHMTQQSHCC_ 0 0 0 L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|86|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|86|2|sense L1MA2_dup3606|chr9:131931268-131935375:+|1.7797980815121417|0.0469826244375599|5.24|151.0|86|2|sense MSMS UPN46_class_I_Rep_3 1 619.2310791015625 2 619.230993 1236.44743 NaN NaN NaN NaN NaN NaN NaN 16.963 1 16.963 16.463 17.463 0 0 0 0 0.53105 1 1260 1260 0 0 1 55961 9370 35157 35175 64302 64302 -0.16133340091187165 YHNEMQKH 8 Unmodified _YHNEMQKH_ 0 0 0 REV__L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|68|2|sense REV__L1PA7_dup11592|chr14:88406616-88410442:-|1.3797335792757022|0.3173550517733524|2.12|150.0|68|2|sense MSMS UPN47_class_I_Rep_1 2 543.7438354492188 2 543.742908 1085.47126 NaN NaN NaN NaN NaN NaN NaN 112.81 1 116.38 115.88 116.88 3.572 0 0 0 0.40604 1 27820 27820 2.5775 0 1 + 55962 29995 35158 35176 64303 64303 -0.06805415270878257 YHNLAIVLL 9 Unmodified _YHNLAIVLL_ 0 0 0 L1ME2_dup3201|chr3:197111563-197112206:-|1.069328689943798|0.0182626851934374|5.87|151.0|46|3|anti-sense L1ME2_dup3201|chr3:197111563-197112206:-|1.069328689943798|0.0182626851934374|5.87|151.0|46|3|anti-sense L1ME2_dup3201|chr3:197111563-197112206:-|1.069328689943798|0.0182626851934374|5.87|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_1 5 528.3162231445312 2 528.316035 1054.61752 NaN NaN NaN NaN NaN NaN NaN 72.082 1 75.555 75.055 76.055 3.4732 0 0 0 0.36505 1 16895 16895 7.2892 0 1 55963 12502 35159 35177 64304 64304 0.09239210236660256 YHNRYRIR 8 Unmodified _YHNRYRIR_ 0 0 0 REV__Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|67|1|anti-sense REV__Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_2 3 589.3199462890625 2 589.320506 1176.62646 NaN NaN NaN NaN NaN NaN NaN 36.348 1 39.759 39.259 40.259 3.4114 0 0 0 0.40746 1 6809 6809 0.69038 0.088878 1 + 55964 32378 35160 35178 64305 64305 0.04520996645692321 YHPAIPLLG 9 Unmodified _YHPAIPLLG_ 0 0 0 L1PB1_dup817|chr1:246285436-246286178:+|1.7673049604374944|0.0167821504129546|6.72|151.0|9|1|sense L1PB1_dup817|chr1:246285436-246286178:+|1.7673049604374944|0.0167821504129546|6.72|151.0|9|1|sense L1PB1_dup817|chr1:246285436-246286178:+|1.7673049604374944|0.0167821504129546|6.72|151.0|9|1|sense MSMS UPN48_class_I_Rep_1 5 490.78289794921875 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 113.11 1 116.74 116.24 117.24 3.6314 0 0 0 0.4029 1 27470 27470 0 0 1 55965 15204 35161 35179 64306 64306 0.058509656568276114 YHPGLTEQL 9 Unmodified _YHPGLTEQL_ 0 0 0 REV__ENSG00000148384|ENST00000371712|INPP5E REV__ENSG00000148384|ENST00000371712|INPP5E MULTI-MSMS UPN47_class_I_Rep_1 2 529.2680053710938 2 529.269281 1056.52401 0.35509 0.00018794 -0.030355 -1.6066E-05 0.32473 0.00017187 529.269163671314 61.403 1.2208 64.785 64.526 65.747 3.3815 212 89 4 0 0 0 0.46869 1 14627 14627 3.9444 0 1 1144700 + 55966 19587 35162 35180 64307 64307 -0.001991339364394662 YHPHVESYF 9 Unmodified _YHPHVESYF_ 0 0 0 REV__nc|ENSG00000159322|Q9BRR6-4|ADPGK REV__nc|ENSG00000159322|Q9BRR6-4|ADPGK MULTI-MSMS UPN48_class_I_Rep_3 7 589.76611328125 2 589.766906 1177.51926 0.36706 0.00021648 -1.081 -0.00063756 -0.71399 -0.00042109 590.2676635210303 54.298 0.63633 57.867 57.564 58.2 3.5694 55 44 2 0 0 0 0.44858 1 11484 11484 5.2307 0.90143 1 199400 + 55967 19866 35163 35181 64308 64308 -0.06240018079188303 YHPHVLQVL 9 Unmodified _YHPHVLQVL_ 0 0 0 HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|202|1|anti-sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|202|1|anti-sense HERVL-int_dup697|chr4:145028529-145034139:+|2.726506808891723|0.1335790490453708|4.35|151.0|202|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 553.3110961914062 2 553.311284 1104.60801 0.41313 0.00022859 -1.0271 -0.0005683 -0.61395 -0.00033971 553.3106610853929 83.377 0.31308 87.105 86.933 87.246 3.7281 67 40 2 0 0 0 0.18929 1 19778 19778 21.747 4.6338 1 144260 55968 8378 35164 35182 64309 64309 0.059894419511238084 YHPKQKFC 8 Unmodified _YHPKQKFC_ 0 0 0 L1MB4_dup4344|chr9:93100543-93101067:-|1.4020087268152015|0.0411490606061688|5.09|151.0|34|3|anti-sense L1MB4_dup4344|chr9:93100543-93101067:-|1.4020087268152015|0.0411490606061688|5.09|151.0|34|3|anti-sense L1MB4_dup4344|chr9:93100543-93101067:-|1.4020087268152015|0.0411490606061688|5.09|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_2 3 525.7619018554688 2 525.763112 1049.51167 NaN NaN NaN NaN NaN NaN NaN 113.12 1 116.64 116.14 117.14 3.5171 0 0 0 0.40625 1 27502 27502 2.3027 0 1 55969 10521 35165 35183 64310 64310 -0.011104488804676294 YHPLREDQ 8 Unmodified _YHPLREDQ_ 0 0 0 REV__ENSG00000124818|ENST00000371211|OPN5 REV__ENSG00000124818|ENST00000371211|OPN5 MSMS UPN47_class_I_Rep_2 3 529.255859375 2 529.256705 1056.49886 NaN NaN NaN NaN NaN NaN NaN 114.56 1 118.06 117.56 118.56 3.5039 0 0 0 0.40738 1 27901 27901 0.79363 0 1 + 55970 18821 35166 35184 64311 64311 -0.027131887389941767 YHPVLPWV 8 Unmodified _YHPVLPWV_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MSMS UPN46_class_I_Rep_3 1 505.7771301269531 2 505.776545 1009.53854 NaN NaN NaN NaN NaN NaN NaN 110.73 1 110.73 110.23 111.23 0 0 0 0 0.40738 1 27275 27275 0.79363 0 1 55971 4325 35167 35185 64312 64312 0.03414983002357985 YHQIQFFR 8 Unmodified _YHQIQFFR_ 0 0 0 REV__L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|203|3|anti-sense REV__L1MA1_dup1702|chr7:11016600-11019941:-|1.0063547828035706|0.0235091079011405|5.42|150.0|203|3|anti-sense MSMS UPN48_class_I_Rep_1 5 569.7911987304688 2 569.793258 1137.57196 NaN NaN NaN NaN NaN NaN NaN 33.3 1 36.82 36.32 37.32 3.5201 0 0 0 0.40625 1 5177 5177 2.3027 0.4585 1 + 55972 24760 35168 35186 64313 64313 0.008679847742769198 YHQKKIVG 8 Unmodified _YHQKKIVG_ 0 0 0 L1MC4_dup24241|chr21:15023437-15024222:+|1.0853707154906211|0.0165345754507073|6.04|147.0|21|3|sense L1MC4_dup24241|chr21:15023437-15024222:+|1.0853707154906211|0.0165345754507073|6.04|147.0|21|3|sense L1MC4_dup24241|chr21:15023437-15024222:+|1.0853707154906211|0.0165345754507073|6.04|147.0|21|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 486.7851867675781 2 486.784902 971.55525 0.28487 0.00013867 -1.5783 -0.00076828 -1.2934 -0.00062961 486.784173430033 99.652 0.087585 99.652 99.576 99.664 0 15 9 2 0 0 0 0.82752 1 24277 24277 2.5775 0.27475 1 77913 55973 11474 35169 35187 64314 64314 0.06833483888328828 YHQLLCVL 8 Unmodified _YHQLLCVL_ 0 0 0 REV__L1PA5_dup6362|chr9:92568070-92574214:-|4.038909464602933|0.0405720258266784|6.64|151.0|44|1|sense REV__L1PA5_dup6362|chr9:92568070-92574214:-|4.038909464602933|0.0405720258266784|6.64|151.0|44|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 494.3073425292969 2 494.767863 987.521173 0.026116 1.2922E-05 2.3003 0.0011381 2.3264 0.001151 494.7688995523715 50.536 0.38847 54.165 53.988 54.376 3.6285 18 15 2 0 0 0 0.72333 1 11127 11127 2.3027 0 1 47111 + 55974 29369 35170 35188 64315 64315 0.026913194050735 YHQRHRYF 8 Unmodified _YHQRHRYF_ 0 0 0 REV__L1MD2_dup1738|chr3:43312459-43313129:+|1.0822548956932798|0.0509113886036529|4.41|149.0|19|2|sense REV__L1MD2_dup1738|chr3:43312459-43313129:+|1.0822548956932798|0.0509113886036529|4.41|149.0|19|2|sense MSMS UPN48_class_I_Rep_1 5 603.80126953125 2 603.799406 1205.58426 NaN NaN NaN NaN NaN NaN NaN 32.638 1 36.165 35.665 36.665 3.5266 0 0 0 0.40746 1 4987 4987 0.69038 0.16561 1 + 55975 27393 35171 35189 64316 64316 -0.010309787626738398 YHQSILAK 8 Unmodified _YHQSILAK_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS UPN46_class_I_Rep_3 1 480.2693176269531 2 480.269084 958.523616 NaN NaN NaN NaN NaN NaN NaN 93.312 1 93.312 92.812 93.812 0 0 0 0 0.40746 1 22612 22612 0.69038 0 1 55976 4463 35172 35190 64317 64317 0.04269491134380132 YHRFYVPH 8 Unmodified _YHRFYVPH_ 0 0 0 REV__L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|88|3|anti-sense REV__L1MEf_dup545|chr1:182846548-182847947:-|2.370809812276559|0.0415629826964599|5.83|151.0|88|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 559.2781982421875 2 559.780151 1117.54575 0.51218 0.00028671 -0.22815 -0.00012771 0.28403 0.00015899 559.7802481996071 66.982 0.18208 70.478 70.409 70.591 3.4964 10 8 2 0 0 0 0.72333 1 15342 15342 0.79363 0 1 44574 + 55977 28665 35173 35191 64318 64318 -0.008322843972109695 YHRKFHLL 8 Unmodified _YHRKFHLL_ 0 0 0 REV__L1MB7_dup2278|chr2:63170860-63172212:+|2.071553262288551|0.2287940202283112|3.18|151.0|33|3|sense REV__L1MB7_dup2278|chr2:63170860-63172212:+|2.071553262288551|0.2287940202283112|3.18|151.0|33|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 557.3186645507812 2 557.319443 1112.62433 0.37036 0.00020641 -0.93266 -0.00051979 -0.5623 -0.00031338 557.3186096335041 65.557 0.15887 68.813 68.728 68.887 3.2556 13 10 2 0 0 0 0.82752 1 15704 15704 2.3027 0 1 110950 + 55978 26234 35174 35192 64319 64319 0.07252567907880803 YHRPGAVL 8 Unmodified _YHRPGAVL_ 0 0 0 L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|46|2|sense L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|46|2|sense L1M1_dup328|chr1:116000932-116003826:-|1.0303459878049834|0.0168705615834241|5.93|140.0|46|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 456.7552795410156 2 456.756144 911.497735 -0.161 -7.3538E-05 -0.88759 -0.00040541 -1.0486 -0.00047895 456.75548039269535 65.792 0.81853 69.051 68.608 69.427 3.2588 92 50 2 0 0 0 0.82752 1 15675 15675 8.5933 1.304 1 184150 55979 8548 35175 35193 64320 64320 0.03844641682758265 YHRPKRGPN 9 Unmodified _YHRPKRGPN_ 0 0 0 REV__L1PA2_dup2516|chr8:73862444-73863590:+|1.2777412109801791|0.0212858504737404|5.91|150.0|23|3|sense REV__L1PA2_dup2516|chr8:73862444-73863590:+|1.2777412109801791|0.0212858504737404|5.91|150.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.7428588867188 2 562.807231 1123.59991 -0.06735 -3.7905E-05 -1.1576 -0.00065151 -1.225 -0.00068942 562.8065685720185 28.278 0.58634 32.044 31.767 32.353 3.7662 79 46 2 0 0 0 0.48846 1 4277 4277 1.8442 0 1 97039 + 55980 29485 35176 35194 64321 64321 0.043053077543845575 YHRVGRGW 8 Unmodified _YHRVGRGW_ 0 0 0 REV__L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|7|1|sense REV__L1PA7_dup9456|chr10:95928411-95934850:-|1.8405403351445837|0.3347233027659596|2.46|151.0|7|1|sense MSMS UPN47_class_I_Rep_2 3 515.7703857421875 2 515.770117 1029.52568 NaN NaN NaN NaN NaN NaN NaN 17.735 1 21.122 20.622 21.622 3.387 0 0 0 0.40798 1 1380 1380 0 0 1 + 55981 30185 35177 35195 64322 64322 0.012099646628712435 YHRVPRYC 8 Unmodified _YHRVPRYC_ 0 0 0 HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|3|1|sense HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|3|1|sense HAL1_dup20852|chr18:2722982-2724115:-|1.3051852597755706|0.2103219663114778|2.63|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 547.2597045898438 2 547.271635 1092.52872 NaN NaN NaN NaN NaN NaN NaN 24.881 1 28.65 28.15 29.15 3.769 0 0 0 0.40604 1 2947 2947 2.5775 0.27475 1 55982 7868 35178 35196 64323 64323 -0.01384528274661534 YHSLCFYEF 9 Unmodified _YHSLCFYEF_ 0 0 0 L1MB2_dup7471|chr17:29857777-29858233:-|1.006605520487267|0.0026186901503633|8.59|151.0|22|1|anti-sense L1MB2_dup7471|chr17:29857777-29858233:-|1.006605520487267|0.0026186901503633|8.59|151.0|22|1|anti-sense L1MB2_dup7471|chr17:29857777-29858233:-|1.006605520487267|0.0026186901503633|8.59|151.0|22|1|anti-sense MSMS UPN48_class_I_Rep_3 7 604.2688598632812 2 604.757692 1207.50083 NaN NaN NaN NaN NaN NaN NaN 25.159 1 28.928 28.428 29.428 3.769 0 0 0 0.39518 1 3020 3020 1.8442 0.36234 1 55983 10283 35179 35197 64324 64324 -0.09461896045422691 YHSPTPTW 8 Unmodified _YHSPTPTW_ 0 0 0 REV__L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|84|2|anti-sense REV__L1M1_dup805|chr2:42692727-42694721:-|1.501651258338096|0.3028591821535157|2.31|150.0|84|2|anti-sense MSMS UPN46_class_I_Rep_3 1 494.7181091308594 2 494.729792 987.445031 NaN NaN NaN NaN NaN NaN NaN 119.68 1 119.68 119.18 120.18 0 0 0 0 0.40604 1 29756 29756 2.5775 0 1 + 55984 24150 35180 35198 64325 64325 -0.049193611707323726 YHSTLYEI 8 Unmodified _YHSTLYEI_ 0 0 0 L1MA4A_dup5339|chr15:49913118-49915600:+|4.515389611198922|0.0116936617277539|8.59|151.0|93|1|anti-sense L1MA4A_dup5339|chr15:49913118-49915600:+|4.515389611198922|0.0116936617277539|8.59|151.0|93|1|anti-sense L1MA4A_dup5339|chr15:49913118-49915600:+|4.515389611198922|0.0116936617277539|8.59|151.0|93|1|anti-sense MSMS UPN48_class_I_Rep_2 6 513.2528686523438 2 513.250557 1024.48656 NaN NaN NaN NaN NaN NaN NaN 58.507 1 62.005 61.505 62.505 3.4987 0 0 0 0.4044 1 12749 12749 4.756 0.42677 1 55985 9825 35181 35199 64326 64326 -0.024702252020460946 YHWEWDLSI 9 Unmodified _YHWEWDLSI_ 0 0 0 REV__Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|68|2|anti-sense REV__Tigger2b_Pri_dup2033|chr20:11902060-11903055:-|1.1074299173853326|0.0560201730102994|4.31|150.0|68|2|anti-sense MSMS UPN48_class_I_Rep_1 5 624.7880859375 2 624.787838 1247.56112 NaN NaN NaN NaN NaN NaN NaN 25.941 1 29.508 29.008 30.008 3.5667 0 0 0 0.38478 1 3102 3102 4.3292 0 1 + 55986 32701 35182 35200 64327 64327 -0.052754623906594134 YHWGSLYY 8 Unmodified _YHWGSLYY_ 0 0 0 REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|117|1|anti-sense REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|117|1|anti-sense MSMS UPN47_class_I_Rep_2 3 544.7447509765625 2 544.745442 1087.47633 NaN NaN NaN NaN NaN NaN NaN 37.186 1 40.584 40.084 41.084 3.3988 0 0 0 0.40604 1 7062 7062 2.5775 0 1 + 55987 23709 35183 35201 64328 64328 -0.06390788136627634 YHYATIRK 8 Unmodified _YHYATIRK_ 0 0 0 L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|31|2|sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|31|2|sense L1MC1_dup5943|chr7:47289522-47291502:+|1.440630127501683|0.3861037732923866|1.9|151.0|31|2|sense MSMS UPN47_class_I_Rep_3 4 526.2864990234375 2 526.287808 1050.56106 NaN NaN NaN NaN NaN NaN NaN 111.68 1 115.2 114.7 115.7 3.5207 0 0 0 0.40738 1 27420 27420 0.79363 0 1 55988 11174 35184 35202 64329 64329 0.03780582400008825 YHYEMSLFI 9 Unmodified _YHYEMSLFI_ 0 0 0 L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|79|2|anti-sense L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|79|2|anti-sense L1MEf_dup6517|chr9:112285850-112287334:-|2.5504425226992877|0.0183825547958229|7.12|151.0|79|2|anti-sense MSMS UPN47_class_I_Rep_2 3 601.7843017578125 2 601.781167 1201.54778 NaN NaN NaN NaN NaN NaN NaN 37.429 1 40.828 40.328 41.328 3.3988 0 0 0 0.39518 1 7137 7137 1.8442 0.19162 1 55989 13305 35185 35203 64330 64330 -0.04493036494250191 YHYGDYVTLK 10 Unmodified _YHYGDYVTLK_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1 nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MULTI-MSMS UPN48_class_I_Rep_1 5 629.8092041015625 2 629.808771 1257.60299 0.53162 0.00033482 0.17138 0.00010794 0.703 0.00044276 629.808574077331 65.334 0.28483 68.788 68.548 68.833 3.4541 22 19 2 0 0 0 0.56333 1 14820 14820 1.4819 0 1 80471 55990 5496 35186 35204 64331 64331 -0.015509067021412193 YHYLMVFF 8 Unmodified _YHYLMVFF_ 0 0 0 L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|285|2|anti-sense L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|285|2|anti-sense L1PA5_dup9122|chr13:32602093-32608174:-|3.672242312657477|0.0771588484393012|5.57|151.0|285|2|anti-sense MSMS UPN47_class_I_Rep_1 2 560.2708740234375 2 560.270238 1118.52592 NaN NaN NaN NaN NaN NaN NaN 65.952 1 69.31 68.81 69.81 3.3576 0 0 0 0.39167 1 15766 15766 11.114 0 1 55991 14534 35187 35205 64332 64332 -0.028597964521623 YHYLSRHLLFF 11 Unmodified _YHYLSRHLLFF_ 0 0 0 REV__L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|185|1|anti-sense REV__L1PA7_dup5679|chr6:143665876-143670919:-|1.6945571243574804|0.3064855322164265|2.47|150.0|185|1|anti-sense MSMS UPN48_class_I_Rep_3 7 499.26513671875 3 499.266345 1494.7772 NaN NaN NaN NaN NaN NaN NaN 26.191 1 29.957 29.457 30.457 3.7663 0 0 0 0.38417 1 3284 3284 0.50596 0 1 + 55992 30134 35188 35206 64333 64333 0.04960718513825668 YHYRKGIY 8 Unmodified _YHYRKGIY_ 0 0 0 REV__ENSG00000132429|ENST00000254765|POPDC3 REV__ENSG00000132429|ENST00000254765|POPDC3 MSMS UPN47_class_I_Rep_1 2 550.28857421875 2 550.287808 1098.56106 NaN NaN NaN NaN NaN NaN NaN 52.186 1 55.744 55.244 56.244 3.5585 0 0 0 0.40404 1 11594 11594 5.2307 0 1 + 55993 19014 35189 35207 64334 64334 0.01572582400012834 YHYTRMIQ 8 Unmodified _YHYTRMIQ_ 0 0 0 REV__ENST00000505045.1_1_5:26903562-26988455:-|nuORF REV__ENST00000505045.1_1_5:26903562-26988455:-|nuORF MSMS UPN48_class_I_Rep_2 6 556.3043212890625 2 556.271301 1110.52805 NaN NaN NaN NaN NaN NaN NaN 112.11 1 115.78 115.28 116.28 3.6666 0 0 0 0.40604 1 26692 26692 2.5775 0 1 + 55994 22704 35190 35208 64335 64335 -0.022793677143681634 YHYVMSFY 8 Unmodified _YHYVMSFY_ 0 0 0 L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|169|3|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|169|3|anti-sense L1ME1_dup13072|chr7:27565467-27567831:-|1.2545977022939223|0.0294976124736796|5.41|151.0|169|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2418212890625 2 555.241678 1108.4688 NaN NaN NaN NaN NaN NaN NaN 28.264 1 31.597 31.097 32.097 3.3337 0 0 0 0.40581 1 4408 4408 2.8892 0.58649 1 55995 12209 35191 35209 64336 64336 -0.08109263728533733 YIACYQHY 8 Unmodified _YIACYQHY_ 0 0 0 Charlie25_dup790|chr12:42181664-42182658:+|1.214473041425718|0.0245907492628454|5.63|151.0|49|1|anti-sense Charlie25_dup790|chr12:42181664-42182658:+|1.214473041425718|0.0245907492628454|5.63|151.0|49|1|anti-sense Charlie25_dup790|chr12:42181664-42182658:+|1.214473041425718|0.0245907492628454|5.63|151.0|49|1|anti-sense MSMS UPN46_class_I_Rep_3 1 530.7304077148438 2 530.731477 1059.4484 NaN NaN NaN NaN NaN NaN NaN 76.804 1 76.804 76.304 77.304 0 0 0 0 0.40364 1 17936 17936 5.7604 1.0044 1 55996 505 35192 35210 64337 64337 -0.07894434388367699 YIADQIKLY 9 Unmodified _YIADQIKLY_ 0 0 0 REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|36|3|anti-sense REV__L1ME3G_dup7028|chr7:74861810-74862310:+|1.2442056306940552|0.0371302284194022|5.07|151.0|36|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.8107299804688 2 563.810782 1125.60701 0.43766 0.00024676 -0.10019 -5.6487E-05 0.33747 0.00019027 563.8105604887661 66.937 0.71545 70.128 69.903 70.618 3.1914 87 54 2 0 0 0 0.41259 1 16219 16219 7.2892 0 1 95293 + 55997 28203 35193 35211 64338 64338 0.04923182791549152 YIAFKKKE 8 Unmodified _YIAFKKKE_ 0 0 0 L1MA7_dup8195|chr20:17982774-17983267:-|1.0985374731205355|0.1123790332442674|3.29|150.0|1|1|sense L1MA7_dup8195|chr20:17982774-17983267:-|1.0985374731205355|0.1123790332442674|3.29|150.0|1|1|sense L1MA7_dup8195|chr20:17982774-17983267:-|1.0985374731205355|0.1123790332442674|3.29|150.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 513.805908203125 2 513.80276 1025.59097 NaN NaN NaN NaN NaN NaN NaN 87.933 1 91.551 91.051 92.051 3.6187 0 0 0 0.40625 1 21085 21085 2.3027 0 1 55998 10040 35194 35212 64339 64339 0.0791952134532039 YIAFRKVK 8 Unmodified _YIAFRKVK_ 0 0 0 ENSG00000110011|ENST00000628077|DNAJC4 ENSG00000110011|ENST00000628077|DNAJC4 ENSG00000110011|ENST00000628077|DNAJC4 MSMS UPN47_class_I_Rep_1 2 512.82080078125 2 512.818744 1023.62294 NaN NaN NaN NaN NaN NaN NaN 27.449 1 31.215 30.715 31.715 3.7662 0 0 0 0.40738 1 4084 4084 0.79363 0.10326 1 55999 1919 35195 35213 64340 64340 0.11206933819130427 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN46_class_I_Rep_3 1 485.77227783203125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 114.84 1 114.84 114.34 115.34 0 0 0 0 0.40738 1 28397 28397 0.79363 0 1 + 56000 20771 35196 35214 64341 64341 0.042383752771456784 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN47_class_I_Rep_1 2 485.7723083496094 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 26.31 1 30.072 29.572 30.572 3.7624 0 0 0 0.40738 1 3747 3747 0.79363 0 1 + 56001 20771 35196 35214 64342 64342 0.042383752771456784 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN47_class_I_Rep_3 4 485.77313232421875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 23.505 1 26.856 26.356 27.356 3.3509 0 0 0 0.40738 1 3001 3001 0.79363 0 1 + 56002 20771 35196 35214 64343 64343 0.042383752771456784 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.77215576171875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 112.99 1 116.66 116.16 117.16 3.6648 0 0 0 0.40738 1 26945 26945 0.79363 0 1 + 56003 20771 35196 35214 64344 64344 0.042383752771456784 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.7731628417969 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 20.036 1 23.657 23.157 24.157 3.6215 0 0 0 0.40738 1 1627 1627 0.79363 0 1 + 56004 20771 35196 35214 64345 64345 0.042383752771456784 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.77142333984375 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 21.483 1 25.197 24.697 25.697 3.7144 0 0 0 0.40738 1 2025 2025 0.79363 0 1 + 56005 20771 35196 35214 64346 64346 0.042383752771456784 YIAFRTLS 8 Unmodified _YIAFRTLS_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.77215576171875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 115.01 1 118.66 118.16 119.16 3.6433 0 0 0 0.40738 1 27361 27361 0.79363 0 1 + 56006 20771 35196 35214 64347 64347 0.042383752771456784 YIAIMIYA 8 Unmodified _YIAIMIYA_ 0 0 0 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 MSMS UPN46_class_I_Rep_3 1 479.736572265625 2 479.259339 956.504126 NaN NaN NaN NaN NaN NaN NaN 116.54 1 116.54 116.04 117.04 0 0 0 0 0.40738 1 28854 28854 0.79363 0 1 + 56007 18922 35197 35215 64348 64348 0.024133987992399852 YIAPPGIL 8 Unmodified _YIAPPGIL_ 0 0 0 ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO ENSG00000186472|ENST00000333891|PCLO ENSG00000186472|ENST00000333891|PCLO MSMS UPN48_class_I_Rep_3 7 422.25360107421875 2 422.252372 842.49019 NaN NaN NaN NaN NaN NaN NaN 48.471 1 52.105 51.605 52.605 3.6339 0 0 0 0.4032 1 9627 9627 6.3541 0 1 56008 5157 35198 35216 64349 64349 0.06264489362479253 YIATIIKL 8 Unmodified _YIATIIKL_ 0 0 0 REV__L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|72|3|sense;REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense REV__L1PA5_dup5804|chr8:99308182-99314316:-|3.040349319267749|0.0502936695123377|5.92|151.0|50|1|sense MSMS UPN47_class_I_Rep_3 4 467.8009033203125 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 71.595 1 74.814 74.314 75.314 3.2188 0 0 0 0.40746 1 17576 17576 0.69038 0 1 + 56009 29683;29788 35199 35217 64350 64350 0.12045306976403936 YICCCCCC 8 Unmodified _YICCCCCC_ 0 0 0 REV__L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense REV__L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense MSMS UPN47_class_I_Rep_1 2 457.28955078125 2 457.113809 912.213064 NaN NaN NaN NaN NaN NaN NaN 89.202 1 92.875 92.375 93.375 3.6738 0 0 0 0.40798 1 22300 22300 0 0 1 + 56010 29036 35200 35218 64351 64351 -0.246553937673184 YICCCCCC 8 Unmodified _YICCCCCC_ 0 0 0 REV__L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense REV__L1PA11_dup3980|chr21:5561002-5564111:-|3.088154940004186|0.1273465350769654|4.6|151.0|127|1|anti-sense MSMS UPN47_class_I_Rep_3 4 456.7553405761719 2 457.113809 912.213064 NaN NaN NaN NaN NaN NaN NaN 66.138 1 69.323 68.823 69.823 3.1853 0 0 0 0.40798 1 15931 15931 0 0 1 + 56011 29036 35200 35218 64352 64352 -0.246553937673184 YICYFKVVS 9 Unmodified _YICYFKVVS_ 0 0 0 REV__L1MC4_dup1181|chr1:161774467-161776130:-|1.2784328280445951|0.1122143867520853|3.51|151.0|85|2|anti-sense REV__L1MC4_dup1181|chr1:161774467-161776130:-|1.2784328280445951|0.1122143867520853|3.51|151.0|85|2|anti-sense MSMS UPN47_class_I_Rep_3 4 561.2879638671875 2 561.288628 1120.5627 NaN NaN NaN NaN NaN NaN NaN 27.591 1 30.933 30.433 31.433 3.3422 0 0 0 0.40038 1 4209 4209 0.6015 0 1 + 56012 26804 35201 35219 64353 64353 0.007244553737336901 YICYLKKK 8 Unmodified _YICYLKKK_ 0 0 0 REV__ENST00000573189.2_1_16:72039593-72040031:-|nuORF REV__ENST00000573189.2_1_16:72039593-72040031:-|nuORF MSMS UPN48_class_I_Rep_1 5 529.8052978515625 2 529.806988 1057.59942 NaN NaN NaN NaN NaN NaN NaN 20.61 1 24.155 23.655 24.655 3.5454 0 0 0 0.40738 1 1764 1764 0.79363 0 1 + 56013 19676 35202 35220 64354 64354 0.07292751990280522 YIDDVFHAL 9 Unmodified _YIDDVFHAL_ 0 0 0 nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1 nc|ENSG00000143622|Q92963-2|RIT1 nc|ENSG00000143622|Q92963-2|RIT1 MSMS UPN46_class_I_Rep_3 1 546.7720947265625 2 546.771657 1091.52876 NaN NaN NaN NaN NaN NaN NaN 73.123 1 73.123 72.623 73.623 0 0 0 0 0.1724 1 16938 16938 18.135 8.7875 1 56014 3314 35203 35221 64355 64355 -0.013342497936719155 YIDEGRLVL 9 Unmodified _YIDEGRLVL_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-SECPEP UPN48_class_I_Rep_2 6 538.8150024414062 2 539.300581 1076.58661 0.59461 0.00032067 -2.109 -0.0011374 -1.5144 -0.00081671 539.3002484935454 55.173 0.51217 58.729 58.508 59.02 3.5559 43 28 3 0 0 0 0.10629 1 11756 11756 17.113 3.2068 1 112150 56015 951 35204 35222 64356 64356 0.05138012131760661 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 631.788330078125 2 631.788035 1261.56152 0.21541 0.00013609 0.24726 0.00015622 0.46267 0.00029231 631.7881832789127 46.957 0.86948 50.652 50.284 51.154 3.6951 193 67 4 0 0 0 0.0054476 8 10077 9917;9947;9956;9995;10034;10077;10115;10137 135.86 85.93 1 1488600 56016 4366 35205 35223 64357;64358;64359;64360;64361;64362;64363;64364 64362 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 631.7882080078125 2 631.788035 1261.56152 0.22841 0.0001443 1.6022 0.0010122 1.8306 0.0011565 631.7888156160268 47.513 0.14655 51.208 51.154 51.3 3.6951 23 17 2 0 0 0 0.065535 3 10167 10167;10171;10185 42.312 7.4535 1 203270 56017 4366 35205 35223 64365;64366;64367 64365 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.789794921875 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 47.694 1 51.389 50.889 51.889 3.6951 0 0 0 0.098423 1 10223 10223 24.991 2.2547 1 56018 4366 35205 35223 64368 64368 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.7875366210938 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 47.796 1 51.478 50.978 51.978 3.6819 0 0 0 0.11827 1 10254 10254 21.537 3.3906 1 56019 4366 35205 35223 64369 64369 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.7897338867188 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 47.852 1 51.534 51.034 52.034 3.6819 0 0 0 0.28608 1 10271 10271 11.495 5.2889 1 56020 4366 35205 35223 64370 64370 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.7880859375 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 47.885 1 51.567 51.067 52.067 3.6819 0 0 0 0.29913 1 10281 10281 10.8 5.0677 1 56021 4366 35205 35223 64371 64371 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MSMS UPN47_class_I_Rep_1 2 631.7887573242188 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 48.06 1 51.742 51.242 52.242 3.6819 0 0 0 0.3377 1 10334 10334 8.7454 2.5396 1 56022 4366 35205 35223 64372 64372 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 631.7880859375 2 631.788035 1261.56152 0.31709 0.00020033 0.25356 0.0001602 0.57065 0.00036053 631.7881690122933 47.302 1.5584 50.654 50.261 51.82 3.3515 261 117 4 0 0 0 0.0055684 13 10088 10041;10055;10088;10129;10168;10210;10241;10244;10276;10313;10357;10403;10457 135.86 89.842 1 1319300 56023 4366 35205 35223 64373;64374;64375;64376;64377;64378;64379;64380;64381;64382;64383;64384;64385 64375 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 632.2894897460938 2 631.788035 1261.56152 0.36987 0.00023368 1.0157 0.00064169 1.3855 0.00087537 631.7888046522361 48.549 0.26709 51.896 51.815 52.082 3.3465 16 10 2 0 0 0 0.37599 1 10507 10507 9.3831 0.78985 1 66250 56024 4366 35205 35223 64386 64386 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 631.7885131835938 2 631.788035 1261.56152 0.35976 0.00022729 0.46606 0.00029445 0.82582 0.00052174 631.7882821683017 47.36 1.3095 50.6 50.259 51.568 3.2405 229 107 4 0 0 0 0.0058187 11 10319 10127;10138;10174;10214;10251;10285;10319;10347;10389;10429;10468 135.86 89.842 1 1104300 56025 4366 35205 35223 64387;64388;64389;64390;64391;64392;64393;64394;64395;64396;64397 64393 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 631.7882690429688 2 631.788035 1261.56152 0.41023 0.00025918 -0.37764 -0.00023859 0.032583 2.0586E-05 631.7875535920379 48.413 0.35709 51.648 51.544 51.902 3.2345 20 15 2 0 0 0 0.38714 2 10525 10525;10570 8.7454 2.5396 1 90557 56026 4366 35205 35223 64398;64399 64398 -0.058800874614689747 YIDEQFERY 9 Unmodified _YIDEQFERY_ 0 0 0 ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENST00000467971.5_1_2:242255375-242276932:+|nuORF MSMS UPN47_class_I_Rep_3 4 631.789794921875 2 631.788035 1261.56152 NaN NaN NaN NaN NaN NaN NaN 48.801 1 52.035 51.535 52.535 3.2345 0 0 0 0.28608 1 10642 10642 11.495 2.7493 1 56027 4366 35205 35223 64400 64400 -0.058800874614689747 YIDFFILE 8 Unmodified _YIDFFILE_ 0 0 0 L1ME3F_dup3461|chr13:28053396-28053854:-|3.2361013980399327|0.0125595968675176|8.01|150.0|20|1|anti-sense L1ME3F_dup3461|chr13:28053396-28053854:-|3.2361013980399327|0.0125595968675176|8.01|150.0|20|1|anti-sense L1ME3F_dup3461|chr13:28053396-28053854:-|3.2361013980399327|0.0125595968675176|8.01|150.0|20|1|anti-sense MSMS UPN47_class_I_Rep_1 2 530.2734375 2 530.273501 1058.53245 NaN NaN NaN NaN NaN NaN NaN 114.18 1 117.76 117.26 118.26 3.574 0 0 0 0.40625 1 28206 28206 2.3027 0 1 56028 12818 35206 35224 64401 64401 0.0055241998018118466 YIDFLSFGHTP 11 Unmodified _YIDFLSFGHTP_ 0 0 0 L1MA4_dup3449|chr5:138995537-138996513:-|2.4513801911433344|0.0718978049866113|5.09|151.0|66|3|anti-sense L1MA4_dup3449|chr5:138995537-138996513:-|2.4513801911433344|0.0718978049866113|5.09|151.0|66|3|anti-sense L1MA4_dup3449|chr5:138995537-138996513:-|2.4513801911433344|0.0718978049866113|5.09|151.0|66|3|anti-sense MSMS UPN47_class_I_Rep_3 4 648.814453125 2 648.816596 1295.61864 NaN NaN NaN NaN NaN NaN NaN 46.36 1 49.604 49.104 50.104 3.2439 0 0 0 0.38417 1 9911 9911 2.7352 0.89096 1 56029 9680 35207 35225 64402 64402 -0.017346201851069054 YIDHAAVL 8 Unmodified _YIDHAAVL_ 0 0 0 ENSG00000183134|ENST00000332539|PTGDR2 ENSG00000183134|ENST00000332539|PTGDR2 ENSG00000183134|ENST00000332539|PTGDR2 MULTI-MSMS UPN47_class_I_Rep_1 2 451.2425231933594 2 451.242535 900.470518 -0.34746 -0.00015679 -0.10058 -4.5385E-05 -0.44803 -0.00020217 451.2425061043318 39.621 0.59479 43.288 43.146 43.741 3.6668 65 44 2 0 0 0 0.82752 1 7756 7756 9.3474 2.0582 1 61648 56030 4985 35208 35226 64403 64403 0.01630113351700402 YIDITKKK 8 Unmodified _YIDITKKK_ 0 0 0 REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|34|2|anti-sense REV__L1ME4a_dup13927|chr6:150989292-150989792:+|1.5683487452509035|0.0272985574310966|5.84|150.0|34|2|anti-sense MSMS UPN47_class_I_Rep_2 3 504.8087463378906 2 504.808042 1007.60153 NaN NaN NaN NaN NaN NaN NaN 115.71 1 119.21 118.71 119.71 3.4965 0 0 0 0.40746 1 28224 28224 0.69038 0 1 + 56031 28214 35209 35227 64404 64404 0.09803503999751229 YIDLLLFNK 9 Unmodified _YIDLLLFNK_ 0 0 0 Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|13|2|sense Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|13|2|sense Charlie1b_dup202|chr1:198661154-198661708:-|1.2879324847562292|0.0101951133103182|6.98|151.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 570.706298828125 2 569.828975 1137.6434 0.43891 0.00025011 -0.08938 -5.0931E-05 0.34954 0.00019918 569.8288622746381 73.507 0.46774 76.988 76.604 77.072 3.4812 127 42 4 0 0 0 0.28552 1 17256 17256 14.838 0 1 1313800 56032 499 35210 35228 64405 64405 0.08008059688290814 YIDNGEILGR 10 Unmodified _YIDNGEILGR_ 0 0 0 REV__nc|ENSG00000138081|Q86XK2-2|FBXO11 REV__nc|ENSG00000138081|Q86XK2-2|FBXO11 MULTI-MSMS UPN48_class_I_Rep_2 6 575.2987670898438 2 575.29857 1148.58259 0.56221 0.00032344 -0.44467 -0.00025582 0.11754 6.7619E-05 575.2982943129105 53.866 0.72105 57.447 57.104 57.825 3.5817 115 49 3 0 0 0 0.53004 1 11430 11430 8.1555 0.54658 1 370910 + 56033 19263 35211 35229 64406 64406 0.014239226380595937 YIDPIAMEY 9 Oxidation (M) _YIDPIAM(Oxidation (M))EY_ YIDPIAM(1)EY YIDPIAM(42)EY 0 0 1 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_1 2 565.757080078125 2 565.757358 1129.50016 0.38075 0.00021541 -0.076405 -4.3227E-05 0.30434 0.00017219 565.7572281195556 62.881 1.0091 66.24 65.513 66.522 3.3595 121 66 2 0 0 0 0.066633 1 14889 14889 41.84 21.386 1 159680 56034 1285 35212 35230 64407 64407 38 -0.05940735485114601 YIDPIAMEY 9 Oxidation (M) _YIDPIAM(Oxidation (M))EY_ YIDPIAM(1)EY YIDPIAM(42)EY 0 0 1 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MSMS UPN47_class_I_Rep_1 2 565.7576293945312 2 565.757358 1129.50016 NaN NaN NaN NaN NaN NaN NaN 67.155 1 70.516 70.016 71.016 3.3611 0 0 0 0.036836 1 16131 16131 41.84 15.498 1 56035 1285 35212 35230 64408 64408 38 -0.05940735485114601 YIDPIAMEY 9 Oxidation (M) _YIDPIAM(Oxidation (M))EY_ YIDPIAM(1)EY YIDPIAM(42)EY 0 0 1 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_2 3 565.7575073242188 2 565.757358 1129.50016 0.43469 0.00024593 -0.23684 -0.000134 0.19784 0.00011193 565.75719379026 62.72 0.50934 65.976 65.666 66.176 3.2558 73 30 3 0 0 0 0.066633 1 14864 14864 41.84 21.386 1 180110 56036 1285 35212 35230 64409 64409 38 -0.05940735485114601 YIDPIAMEY 9 Oxidation (M) _YIDPIAM(Oxidation (M))EY_ YIDPIAM(1)EY YIDPIAM(68)EY 0 0 1 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_2 3 565.7568969726562 2 565.757358 1129.50016 0.42459 0.00024022 -0.14092 -7.9727E-05 0.28367 0.00016049 565.7571736875323 63.131 0.67451 66.387 66.127 66.802 3.2558 99 46 3 0 0 0 0.012845 3 14959 14918;14959;14970 68.081 41.197 1 204520 56037 1285 35212 35230 64410;64411;64412 64411 38 -0.05940735485114601 YIDPIAMEY 9 Oxidation (M) _YIDPIAM(Oxidation (M))EY_ YIDPIAM(1)EY YIDPIAM(68)EY 0 0 1 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_3 4 565.7575073242188 2 565.757358 1129.50016 0.41424 0.00023436 -0.06677 -3.7775E-05 0.34747 0.00019658 565.7571874422948 63.076 1.1085 66.246 65.546 66.654 3.1698 121 68 3 0 0 0 0.012845 3 15001 15001;15043;15060 68.081 47.627 1 239840 56038 1285 35212 35230 64413;64414;64415 64413 38 -0.05940735485114601 YIDPIAMEY 9 Oxidation (M) _YIDPIAM(Oxidation (M))EY_ YIDPIAM(1)EY YIDPIAM(50)EY 0 0 1 ENSG00000086730|ENST00000460943|LAT2;ENST00000490586.1_1_7:73634828-73639069:+|nuORF ENSG00000086730|ENST00000460943|LAT2 ENSG00000086730|ENST00000460943|LAT2 MULTI-MSMS UPN47_class_I_Rep_3 4 565.758056640625 2 565.757358 1129.50016 0.43938 0.00024858 -0.53087 -0.00030034 -0.09149 -5.1761E-05 565.7571457213475 67.426 1.1233 70.618 70.347 71.47 3.1914 105 83 2 0 0 0 0.047711 1 16411 16411 49.933 23.049 1 115030 56039 1285 35212 35230 64416 64416 38 -0.05940735485114601 YIDRIHIF 8 Unmodified _YIDRIHIF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN46_class_I_Rep_3 1 538.7973022460938 2 538.798009 1075.58147 NaN NaN NaN NaN NaN NaN NaN 46.652 1 46.652 46.152 47.152 0 0 0 0 0.39624 1 9580 9580 9.3474 2.9933 1 56040 4671 35213 35231 64417 64417 0.04669753059783943 YIDSEYYNL 9 Unmodified _YIDSEYYNL_ 0 0 0 L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|63|1|anti-sense L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|63|1|anti-sense L1ME4a_dup26870|chr14:50476940-50478547:-|3.458694895679447|0.1176124019457581|4.88|151.0|63|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 590.2647705078125 2 590.263862 1178.51317 0.25687 0.00015162 0.19148 0.00011302 0.44835 0.00026465 590.2638669891352 46.025 0.87965 49.378 49.088 49.968 3.3534 143 57 3 0 0 0 0.28552 1 9868 9868 14.838 0.93222 1 278260 56041 12867 35214 35232 64418 64418 -0.06894581101369113 YIDSKFEDY 9 Unmodified _YIDSKFEDY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS UPN47_class_I_Rep_1 2 590.2637329101562 2 590.263862 1178.51317 0.12285 7.2513E-05 0.36488 0.00021538 0.48773 0.00028789 590.2639235675834 45.75 0.89174 49.45 49.05 49.942 3.6999 116 51 3 0 0 0 0.04399 7 9615 9570;9581;9615;9656;9698;9734;9741 51.415 18.63 1 299020 56042 2391 35215 35233 64419;64420;64421;64422;64423;64424;64425 64421 -0.06894581101369113 YIDSKFEDY 9 Unmodified _YIDSKFEDY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS UPN47_class_I_Rep_2 3 590.2640991210938 2 590.263862 1178.51317 0.25687 0.00015162 0.19148 0.00011302 0.44835 0.00026465 590.2638669891352 46.025 0.87965 49.378 49.088 49.968 3.3534 143 57 3 0 0 0 0.048729 4 9795 9717;9754;9795;9832 49.527 16.742 1 278260 56043 2391 35215 35233 64426;64427;64428;64429 64428 -0.06894581101369113 YIDSKFEDY 9 Unmodified _YIDSKFEDY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS UPN47_class_I_Rep_3 4 590.2640991210938 2 590.263862 1178.51317 0.2861 0.00016887 0.28484 0.00016813 0.57094 0.000337 590.2640250062681 46.142 0.97541 49.386 49.031 50.007 3.2441 127 61 3 0 0 0 0.048729 4 9854 9813;9854;9897;9944 49.527 18.891 1 250840 56044 2391 35215 35233 64430;64431;64432;64433 64431 -0.06894581101369113 YIDSYKMY 8 Unmodified _YIDSYKMY_ 0 0 0 REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|66|1|sense REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|66|1|sense MSMS UPN48_class_I_Rep_1 5 541.747802734375 2 541.746793 1081.47903 NaN NaN NaN NaN NaN NaN NaN 20.507 1 24.053 23.553 24.553 3.5454 0 0 0 0.40643 1 1740 1740 2.0598 0 1 + 56045 30604 35216 35234 64434 64434 -0.058447007939776086 YIFFWYLA 8 Unmodified _YIFFWYLA_ 0 0 0 L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|42|2|anti-sense L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|42|2|anti-sense L1MC4_dup16256|chr11:11917161-11917904:+|1.4495344463682591|0.16701603780442|3.12|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.7774047851562 2 561.786579 1121.5586 NaN NaN NaN NaN NaN NaN NaN 115.04 1 118.68 118.18 119.18 3.6433 0 0 0 0.40738 1 27367 27367 0.79363 0 1 56046 11414 35217 35235 64435 64435 0.0026873394233462022 YIFHIYFN 8 Unmodified _YIFHIYFN_ 0 0 0 MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|25|3|sense;L1MA7_dup439|chr1:198853902-198854762:+|1.64929933640941|0.0150733775894978|6.77|151.0|50|2|anti-sense MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|25|3|sense MER6_dup769|chr19:9432494-9433240:-|1.8145323896847212|0.1066965034942017|4.09|151.0|25|3|sense MSMS UPN47_class_I_Rep_3 4 558.7821044921875 2 558.779285 1115.54402 NaN NaN NaN NaN NaN NaN NaN 77.508 1 80.777 80.277 81.277 3.269 0 0 0 0.4032 1 19304 19304 6.3541 0 1 56047 10022 35218 35236 64436 64436 -0.00913338205805303 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS UPN46_class_I_Rep_3 1 406.87640380859375 3 406.876634 1217.60807 0.024517 9.9756E-06 -0.12194 -4.9616E-05 -0.097426 -3.964E-05 406.8765324660491 47.193 0.84736 47.193 46.782 47.629 0 145 84 2 0 0 0 0.22932 4 9751 9672;9711;9751;9784 18.373 2.8154 1 272120 56048 3078 35219 35237 64437;64438;64439;64440 64439 0.007973971604542385 YIFLKFFYM 9 Unmodified _YIFLKFFYM_ 0 0 0 L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|83|2|anti-sense L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|83|2|anti-sense L1MC4a_dup8849|chr17:8917891-8919296:+|3.9748185359145336|0.0359264757193905|6.79|151.0|83|2|anti-sense MSMS UPN48_class_I_Rep_3 7 636.3311157226562 2 636.330296 1270.64604 NaN NaN NaN NaN NaN NaN NaN 31.864 1 35.566 35.066 36.066 3.7015 0 0 0 0.4007 1 4771 4771 0.52476 0 1 56049 11630 35220 35238 64441 64441 0.021541918215689293 YIFMFLRF 8 Unmodified _YIFMFLRF_ 0 0 0 L1MB8_dup5008|chr5:138516708-138517088:+|1.1425339456526389|0.013049357342212|6.45|151.0|26|2|anti-sense L1MB8_dup5008|chr5:138516708-138517088:+|1.1425339456526389|0.013049357342212|6.45|151.0|26|2|anti-sense L1MB8_dup5008|chr5:138516708-138517088:+|1.1425339456526389|0.013049357342212|6.45|151.0|26|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 568.2493896484375 2 568.801706 1135.58886 0.4461 0.00025374 2.21 0.001257 2.6561 0.0015108 568.8029493443468 72.449 0.21698 75.922 75.775 75.992 3.4732 30 18 2 0 0 0 0.72333 1 16969 16969 8.5933 0 1 120050 56050 11008 35221 35239 64442 64442 0.026487693358603792 YIFPAWTK 8 Unmodified _YIFPAWTK_ 0 0 0 REV__Tigger16b_dup923|chr12:11774595-11774716:-|1.821524405244849|0.0191715023499833|6.57|151.0|2|1|sense REV__Tigger16b_dup923|chr12:11774595-11774716:-|1.821524405244849|0.0191715023499833|6.57|151.0|2|1|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 513.7896728515625 2 513.276378 1024.5382 -0.17555 -9.0106E-05 0.0053916 2.7674E-06 -0.17016 -8.7338E-05 513.7776982976997 35.093 0.13293 38.779 38.682 38.815 3.6859 10 8 2 0 0 0 0.72333 1 6368 6368 1.8442 0 1 26811 + 56051 32593 35222 35240 64443 64443 0.02691563282496645 YIFPIDRP 8 Unmodified _YIFPIDRP_ 0 0 0 REV__L1PA15_dup644|chr2:39316900-39318409:+|1.1446474181394155|0.2639994477917565|2.12|150.0|18|1|sense REV__L1PA15_dup644|chr2:39316900-39318409:+|1.1446474181394155|0.2639994477917565|2.12|150.0|18|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 510.7785949707031 2 510.779285 1019.54402 0.35992 0.00018384 -1.1821 -0.00060382 -0.82223 -0.00041998 510.778566649442 25.8 0.6095 29.433 29.164 29.774 3.6333 83 66 2 0 0 0 0.82752 1 3249 3249 2.5775 0.51773 1 92685 + 56052 29267 35223 35241 64444 64444 0.0350266179417531 YIFSASFW 8 Unmodified _YIFSASFW_ 0 0 0 L1MEi_dup111|chr1:89701763-89702452:+|2.478970986971637|0.0394184432968565|5.97|151.0|41|3|anti-sense L1MEi_dup111|chr1:89701763-89702452:+|2.478970986971637|0.0394184432968565|5.97|151.0|41|3|anti-sense L1MEi_dup111|chr1:89701763-89702452:+|2.478970986971637|0.0394184432968565|5.97|151.0|41|3|anti-sense MSMS UPN46_class_I_Rep_3 1 510.7442932128906 2 510.744911 1019.47527 NaN NaN NaN NaN NaN NaN NaN 110.66 1 110.66 110.16 111.16 0 0 0 0 0.40604 1 27257 27257 2.5775 0 1 56053 13447 35224 35242 64445 64445 -0.03369002505519347 YIFWCLIM 8 Unmodified _YIFWCLIM_ 0 0 0 REV__L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|20|3|sense REV__L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|20|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 544.8018188476562 2 544.769017 1087.52348 -0.1578 -8.5965E-05 0.095767 5.2171E-05 -0.062034 -3.3794E-05 544.7691980187053 32.771 0.07412 36.057 36 36.074 3.2867 6 4 2 0 0 0 0.82752 1 5744 5744 0.79363 0 1 28598 + 56054 28233 35225 35243 64446 64446 -0.016779681814796277 YIFWCLIM 8 Unmodified _YIFWCLIM_ 0 0 0 REV__L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|20|3|sense REV__L1ME4a_dup33921|chr22:49604053-49604679:+|1.3708645401574002|0.0114960749389728|6.9|148.0|20|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 544.769017 1087.52348 -0.010765 -5.8646E-06 0.41814 0.00022779 0.40737 0.00022192 544.7691424754246 32.231 0.03714 35.944 35.923 35.96 3.7131 -0.056638 0.00013054 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 24833 + 56055 28233 35225 35243 -0.016779681814796277 YIFYYLTY 8 Unmodified _YIFYYLTY_ 0 0 0 REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.281005859375 2 573.281326 1144.5481 0.45762 0.00026235 -2.2719 -0.0013025 -1.8143 -0.0010401 573.2800071218327 74.678 0.26492 77.924 77.821 78.086 3.2464 39 27 2 0 0 0 0.82752 1 18521 18521 14.582 0 1 43167 + 56056 27790 35226 35244 64447 64447 -0.018392935027804924 YIFYYLTY 8 Unmodified _YIFYYLTY_ 0 0 0 REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 573.2803344726562 2 573.281326 1144.5481 0.4583 0.00026274 -3.2272 -0.0018501 -2.7689 -0.0015874 573.2799787639846 75.023 0.064484 78.27 78.238 78.303 3.2464 8 6 2 0 0 0 0.82752 1 18593 18593 8.5933 0 1 43229 + 56057 27790 35226 35244 64448 64448 -0.018392935027804924 YIFYYLTY 8 Unmodified _YIFYYLTY_ 0 0 0 REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 573.27978515625 2 573.281326 1144.5481 NaN NaN NaN NaN NaN NaN NaN 74.382 1 77.618 77.118 78.118 3.2363 0 0 0 0.36148 1 18407 18407 19.439 0 1 + 56058 27790 35226 35244 64449 64449 -0.018392935027804924 YIGEVLVSV 9 Unmodified _YIGEVLVSV_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS UPN47_class_I_Rep_1 2 489.7791748046875 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 72.825 1 76.205 75.705 76.705 3.3799 0 0 0 0.078496 1 17844 17844 29.082 0 1 56059 2964 35227 35245 64450 64450 0.053678223544807224 YIGEVLVSV 9 Unmodified _YIGEVLVSV_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS UPN47_class_I_Rep_3 4 489.7782897949219 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 73.071 1 76.298 75.798 76.798 3.2271 0 0 0 0.2408 1 18023 18023 13.906 0 1 56060 2964 35227 35245 64451 64451 0.053678223544807224 YIGEVLVSV 9 Unmodified _YIGEVLVSV_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS UPN47_class_I_Rep_3 4 489.77984619140625 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 73.076 1 76.303 75.803 76.803 3.2271 0 0 0 0.085573 1 18025 18025 27.629 4.8925 1 56061 2964 35227 35245 64452 64452 0.053678223544807224 YIGEVLVSV 9 Unmodified _YIGEVLVSV_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS UPN47_class_I_Rep_3 4 489.7796936035156 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 73.234 1 76.461 75.961 76.961 3.2271 0 0 0 0.31276 1 18073 18073 10.074 0 1 56062 2964 35227 35245 64453 64453 0.053678223544807224 YIGHFVVYG 9 Unmodified _YIGHFVVYG_ 0 0 0 REV__L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|277|3|anti-sense REV__L1PA7_dup10153|chr12:297987-303663:+|2.60036733919628|0.4155120701272515|2.65|151.0|277|3|anti-sense MSMS UPN46_class_I_Rep_3 1 527.7930908203125 2 527.77146 1053.52837 NaN NaN NaN NaN NaN NaN NaN 68.28 1 68.28 67.78 68.78 0 0 0 0 0.39326 1 15582 15582 2.3027 0 1 + 56063 29963 35228 35246 64454 64454 0.0037437527712427254 YIGIHVPLL 9 Unmodified _YIGIHVPLL_ 0 0 0 L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 513.3150024414062 2 512.813128 1023.6117 0.30954 0.00015874 -0.16352 -8.3856E-05 0.14602 7.4883E-05 512.8128965075585 67.205 0.73606 70.656 70.21 70.946 3.4516 83 47 3 0 0 0 0.2896 1 15306 15306 14.582 0 1 226410 56064 14620 35229 35247 64455 64455 0.10084111724984268 YIGIHVPLL 9 Unmodified _YIGIHVPLL_ 0 0 0 L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense MSMS UPN48_class_I_Rep_1 5 512.8131713867188 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 67.546 1 70.998 70.498 71.498 3.4516 0 0 0 0.22893 1 15533 15533 14.582 0 1 56065 14620 35229 35247 64456 64456 0.10084111724984268 YIGIHVPLL 9 Unmodified _YIGIHVPLL_ 0 0 0 L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 512.8133544921875 2 512.813128 1023.6117 0.34496 0.0001769 -0.059336 -3.0428E-05 0.28563 0.00014647 512.8129426957381 66.982 0.78116 70.478 70.1 70.881 3.4964 89 49 2 0 0 0 0.12962 2 15438 15261;15438 28.173 4.1168 1 218280 56066 14620 35229 35247 64457;64458 64458 0.10084111724984268 YIGIHVPLL 9 Unmodified _YIGIHVPLL_ 0 0 0 L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense L1PA6_dup3729|chrX:85077112-85082520:-|1.8349978852768276|0.3594860835373388|2.35|150.0|220|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 512.8123168945312 2 512.813128 1023.6117 0.35852 0.00018386 -0.16293 -8.3552E-05 0.1956 0.0001003 512.8128962543692 66.825 0.8537 70.333 69.962 70.815 3.5077 92 59 2 0 0 0 0.37662 1 15328 15328 9.3474 0 1 252570 56067 14620 35229 35247 64459 64459 0.10084111724984268 YIGNKVRRQ 9 Unmodified _YIGNKVRRQ_ 0 0 0 nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-MSMS UPN48_class_I_Rep_2 6 567.3316040039062 2 567.330539 1132.64652 0.48418 0.00027469 0.50504 0.00028652 0.98922 0.00056122 567.3306874299158 81.265 0.44016 84.922 84.601 85.041 3.6567 92 57 2 0 0 0 0.41259 1 19206 19206 7.2892 3.3448 1 269250 56068 789 35230 35248 64460 64460 0.08550747585650242 YIGVHIYMY 9 Unmodified _YIGVHIYMY_ 0 0 0 L1MA1_dup1902|chr8:54056935-54057954:+|3.8583094851034927|0.3686007618975321|3.39|151.0|46|2|anti-sense L1MA1_dup1902|chr8:54056935-54057954:+|3.8583094851034927|0.3686007618975321|3.39|151.0|46|2|anti-sense L1MA1_dup1902|chr8:54056935-54057954:+|3.8583094851034927|0.3686007618975321|3.39|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_2 3 579.7884521484375 2 579.786253 1157.55795 NaN NaN NaN NaN NaN NaN NaN 42.481 1 45.842 45.342 46.342 3.3611 0 0 0 0.22893 1 8667 8667 14.582 2.341 1 56069 9274 35231 35249 64461 64461 -0.014524287690392157 YIGVKLFF 8 Unmodified _YIGVKLFF_ 0 0 0 REV__L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|126|2|anti-sense REV__L1MA10_dup4338|chr16:72446033-72448418:-|2.255705830231291|0.010978038757015|7.68|151.0|126|2|anti-sense MSMS UPN48_class_I_Rep_3 7 493.8270568847656 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 73.195 1 76.732 76.232 77.232 3.5373 0 0 0 0.40581 1 17113 17113 2.8892 0 1 + 56070 24822 35232 35250 64462 64462 0.07033037804944797 YIGWDLNLVN 10 Unmodified _YIGWDLNLVN_ 0 0 0 REV__L1ME2_dup11247|chr17:30119912-30120227:-|1.0497610298242854|0.0173086552026081|5.92|151.0|10|2|sense REV__L1ME2_dup11247|chr17:30119912-30120227:-|1.0497610298242854|0.0173086552026081|5.92|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 603.8118286132812 2 603.811313 1205.60807 0.51873 0.00031322 -0.04622 -2.7908E-05 0.47251 0.00028531 603.8112142783139 56.848 1.3743 60.149 59.8 61.174 3.3009 269 118 3 0 0 0 0.4965 1 13274 13274 12.241 2.1667 1 1253300 + 56071 27823 35233 35251 64463 64463 0.013493971604702892 YIGYVYMQH 9 Unmodified _YIGYVYMQH_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|77|1|anti-sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 587.2737426757812 2 587.273509 1172.53247 0.048257 2.834E-05 -0.47922 -0.00028143 -0.43096 -0.00025309 587.2731780545906 14.765 0.36831 18.152 18.03 18.398 3.3871 84 42 3 0 0 0 0.48643 1 627 627 2.0598 0.21551 1 62091 + 56072 27174 35234 35252 64464 64464 -0.04689903291455266 YIGYVYMQH 9 Unmodified _YIGYVYMQH_ 0 0 0 REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|77|1|anti-sense REV__L1MC5a_dup6833|chr6:157104135-157105597:+|1.10767343688331|0.0439619241972903|4.66|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 587.2735595703125 2 587.273509 1172.53247 -0.41257 -0.00024229 0.1261 7.4054E-05 -0.28648 -0.00016824 587.273544757422 14.806 0.28149 18.176 18.072 18.354 3.3697 56 34 2 0 0 0 0.48643 1 625 625 2.0598 0.21551 1 56258 + 56073 27174 35234 35252 64465 64465 -0.04689903291455266 YIHFGHIPSS 10 Unmodified _YIHFGHIPSS_ 0 0 0 REV__Tigger17a_dup466|chr3:177142762-177143370:+|1.7047157054249535|0.0145705677009651|6.87|151.0|6|2|sense REV__Tigger17a_dup466|chr3:177142762-177143370:+|1.7047157054249535|0.0145705677009651|6.87|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 579.2597045898438 2 579.290548 1156.56654 NaN NaN NaN NaN NaN NaN NaN 23.871 1 27.437 26.937 27.937 3.5655 0 0 0 0.53105 1 2553 2553 1.8442 0.77278 1 + 56074 32606 35235 35253 64466 64466 -0.0054773880817720055 YIHFRFFDE 9 Unmodified _YIHFRFFDE_ 0 0 0 LTR37A_dup1688|chr15:99664855-99665212:-|1.3490487428071685|0.0996291813590923|3.76|151.0|3|2|sense LTR37A_dup1688|chr15:99664855-99665212:-|1.3490487428071685|0.0996291813590923|3.76|151.0|3|2|sense LTR37A_dup1688|chr15:99664855-99665212:-|1.3490487428071685|0.0996291813590923|3.76|151.0|3|2|sense MSMS UPN47_class_I_Rep_3 4 637.3065185546875 2 637.303655 1272.59276 NaN NaN NaN NaN NaN NaN NaN 61.712 1 64.878 64.378 65.378 3.1667 0 0 0 0.39428 1 14578 14578 2.0598 0.21551 1 56075 15627 35236 35254 64467 64467 -0.032634696367040306 YIHGLWLGK 9 Unmodified _YIHGLWLGK_ 0 0 0 L1ME3_dup4854|chr9:123909429-123910657:+|1.0611958639773291|0.004363427606374|7.93|151.0|30|2|sense L1ME3_dup4854|chr9:123909429-123910657:+|1.0611958639773291|0.004363427606374|7.93|151.0|30|2|sense L1ME3_dup4854|chr9:123909429-123910657:+|1.0611958639773291|0.004363427606374|7.93|151.0|30|2|sense MSMS UPN47_class_I_Rep_1 2 543.8060913085938 2 543.808377 1085.6022 NaN NaN NaN NaN NaN NaN NaN 32.72 1 36.433 35.933 36.933 3.7131 0 0 0 0.38639 1 5667 5667 3.9444 1.3669 1 56076 12596 35237 35255 64468 64468 0.06282343439465876 YIHHYHPVY 9 Unmodified _YIHHYHPVY_ 0 0 0 L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|59|2|anti-sense L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|59|2|anti-sense L1MC1_dup7400|chr9:77782239-77783313:+|2.441365694936004|0.0239252188910342|6.67|150.0|59|2|anti-sense MSMS UPN47_class_I_Rep_3 4 614.796630859375 2 614.79854 1227.58253 NaN NaN NaN NaN NaN NaN NaN 48.292 1 51.532 51.032 52.032 3.2405 0 0 0 0.39326 1 10486 10486 2.3027 0.65011 1 56077 11192 35238 35256 64469 64469 -0.02216032571300275 YIHIAKFHM 9 Unmodified _YIHIAKFHM_ 0 0 0 L1MA4A_dup909|chr2:202798559-202799837:-|1.339738261818393|0.0265702368681205|5.66|151.0|31|2|sense L1MA4A_dup909|chr2:202798559-202799837:-|1.339738261818393|0.0265702368681205|5.66|151.0|31|2|sense L1MA4A_dup909|chr2:202798559-202799837:-|1.339738261818393|0.0265702368681205|5.66|151.0|31|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 579.7967529296875 2 580.307687 1158.60082 0.44348 0.00025736 2.4041 0.0013951 2.8476 0.0016525 580.3088940694367 54.342 0.16985 57.856 57.755 57.925 3.5143 16 10 2 0 0 0 0.12444 1 11481 11481 2.0598 0.57785 1 80599 56078 9862 35239 35257 64470 64470 0.027863860790603212 YIHICRIKI 9 Unmodified _YIHICRIKI_ 0 0 0 L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 579.8446655273438 2 579.844436 1157.67432 0.40419 0.00023437 -0.10507 -6.0922E-05 0.29912 0.00017344 579.8443450903954 93.578 0.45816 97.198 96.991 97.449 3.6208 68 53 2 0 0 0 0.48414 1 22486 22486 2.3027 0.24298 1 135220 56079 11222 35240 35258 64471 64471 0.10178934521536576 YIHICRIKI 9 Unmodified _YIHICRIKI_ 0 0 0 L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 579.844436 1157.67432 0.62916 0.00036481 -0.66209 -0.00038391 -0.032932 -1.9096E-05 579.8439902412165 93.646 0.019714 97.115 97.105 97.125 3.4687 -0.059352 -0.00040183 NaN 2.3027 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 206700 56080 11222 35240 35258 0.10178934521536576 YIHICRIKI 9 Unmodified _YIHICRIKI_ 0 0 0 L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 579.844436 1157.67432 0.47929 0.00027791 -0.32609 -0.00018908 0.1532 8.8835E-05 579.8441315400815 93.352 0.21563 97.122 97.009 97.225 3.77 -0.052494 -1.2169E-05 NaN 2.3027 40 31 2 NaN NaN NaN NaN 0 NaN NaN 0 232860 56081 11222 35240 35258 0.10178934521536576 YIHICRIKI 9 Unmodified _YIHICRIKI_ 0 0 0 L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense L1MC2_dup1034|chr3:17487812-17488774:-|1.074990643672343|0.0435914450679269|4.62|151.0|2|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 579.844436 1157.67432 0.49175 0.00028514 -0.11865 -6.8796E-05 0.3731 0.00021634 579.8443303755896 93.371 0.089088 97.262 97.216 97.305 3.8914 0.087816 0.0002284 NaN 2.3027 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 143050 56082 11222 35240 35258 0.10178934521536576 YIHKMVIWG 9 Unmodified _YIHKMVIWG_ 0 0 0 ENST00000488487.2_1_6:3127447-3138314:+|nuORF;nc|ENSG00000137274|Q86WA6-2|BPHL;ENST00000490918.5_1_6:3118974-3138432:+|nuORF;ENSG00000137274|ENST00000380379|BPHL ENST00000488487.2_1_6:3127447-3138314:+|nuORF ENST00000488487.2_1_6:3127447-3138314:+|nuORF MSMS UPN47_class_I_Rep_2 3 573.81201171875 2 573.810062 1145.60557 NaN NaN NaN NaN NaN NaN NaN 26.272 1 29.767 29.267 30.267 3.4945 0 0 0 0.39428 1 3776 3776 2.0598 0.40713 1 56083 3018 35241 35259 64472 64472 0.038592702218011254 YIHLYIYF 8 Unmodified _YIHLYIYF_ 0 0 0 REV__L1MEc_dup9366|chr8:90034835-90036486:-|1.2827695749693928|0.459072900148561|1.48|151.0|93|2|anti-sense REV__L1MEc_dup9366|chr8:90034835-90036486:-|1.2827695749693928|0.459072900148561|1.48|151.0|93|2|anti-sense MSMS UPN48_class_I_Rep_2 6 566.2975463867188 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 78.973 1 82.606 82.106 83.106 3.6331 0 0 0 0.40581 1 18744 18744 2.8892 0 1 + 56084 24478 35242 35260 64473 64473 0.020001189710455947 YIHMLNYY 8 Unmodified _YIHMLNYY_ 0 0 0 L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|4|1|sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|4|1|sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 558.7623901367188 2 558.762778 1115.511 -0.10796 -6.0326E-05 -0.46771 -0.00026134 -0.57568 -0.00032167 558.7625394688938 14.532 0.48957 18.007 17.904 18.393 3.475 80 55 2 0 0 0 0.82752 1 639 639 2.5775 1.0956 1 73434 56085 12258 35243 35261 64474 64474 -0.0421328832017025 YIHMLNYY 8 Unmodified _YIHMLNYY_ 0 0 0 L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|4|1|sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|4|1|sense L1ME1_dup17652|chrX:44929331-44929831:-|1.0915343993512123|0.0048362587777847|7.82|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.762939453125 2 558.762778 1115.511 -0.41825 -0.00023371 -0.28135 -0.00015721 -0.6996 -0.00039091 558.7627327331708 14.698 0.25638 18.068 17.957 18.214 3.3697 48 30 2 0 0 0 0.82752 1 636 636 2.5775 0.27475 1 44984 56086 12258 35243 35261 64475 64475 -0.0421328832017025 YIHMRHSY 8 Unmodified _YIHMRHSY_ 0 0 0 REV__HERVL40-int_dup806|chr10:21636985-21638158:-|1.3891790515194802|0.0073410015257267|7.56|150.0|70|3|anti-sense REV__HERVL40-int_dup806|chr10:21636985-21638158:-|1.3891790515194802|0.0073410015257267|7.56|150.0|70|3|anti-sense MSMS UPN47_class_I_Rep_2 3 553.7645263671875 2 553.763643 1105.51273 NaN NaN NaN NaN NaN NaN NaN 18.879 1 22.269 21.769 22.769 3.3898 0 0 0 0.40738 1 1673 1673 0.79363 0 1 + 56087 23920 35244 35262 64476 64476 -0.03580234511537128 YIHVRYLV 8 Unmodified _YIHVRYLV_ 0 0 0 REV__L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|358|3|anti-sense REV__L1PA5_dup2557|chr4:26693922-26700024:+|1.926604090565805|0.238956627355567|3.01|151.0|358|3|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8348388671875 2 531.808377 1061.6022 NaN NaN NaN NaN NaN NaN NaN 101.41 1 101.41 100.91 101.91 0 0 0 0 0.40738 1 24743 24743 0.79363 0 1 + 56088 29740 35245 35263 64477 64477 0.07386343439452503 YIHWSLFY 8 Unmodified _YIHWSLFY_ 0 0 0 ENSG00000086102.19,NFX1,chr9,+,I1.1,33290598,33294419|64|8.47|5|intron ENSG00000086102.19,NFX1,chr9,+,I1.1,33290598,33294419|64|8.47|5|intron ENSG00000086102.19,NFX1,chr9,+,I1.1,33290598,33294419|64|8.47|5|intron MSMS UPN47_class_I_Rep_2 3 564.7763061523438 2 564.779285 1127.54402 NaN NaN NaN NaN NaN NaN NaN 81.348 1 84.732 84.232 85.232 3.3839 0 0 0 0.33253 1 20259 20259 26.341 0 1 56089 1277 35246 35264 64478 64478 -0.014653382058213538 YIIEFEYY 8 Unmodified _YIIEFEYY_ 0 0 0 HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2681274414062 2 570.268416 1138.52228 NaN NaN NaN NaN NaN NaN NaN 72.617 1 75.996 75.496 76.496 3.3799 0 0 0 0.39167 1 17780 17780 11.114 4.7604 1 56090 7941 35247 35265 64479 64479 -0.041441877450552056 YIIEFEYY 8 Unmodified _YIIEFEYY_ 0 0 0 HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|111|3|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2683715820312 2 570.268416 1138.52228 NaN NaN NaN NaN NaN NaN NaN 72.559 1 75.786 75.286 76.286 3.2271 0 0 0 0.4032 1 17868 17868 6.3541 0.14832 1 56091 7941 35247 35265 64480 64480 -0.041441877450552056 YIIHLIPF 8 Unmodified _YIIHLIPF_ 0 0 0 REV__L1MEd_dup19430|chr17:72732763-72733112:-|1.8619207909606883|0.1205212431185772|3.95|151.0|18|2|anti-sense REV__L1MEd_dup19430|chr17:72732763-72733112:-|1.8619207909606883|0.1205212431185772|3.95|151.0|18|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 509.3088073730469 2 508.302396 1014.59024 0.25024 0.0001272 0.69888 0.00035524 0.94912 0.00048244 508.30185311844053 53.609 0.46278 57.123 56.992 57.455 3.5143 71 32 3 0 0 0 0.82752 1 11318 11318 2.8892 0 1 114970 + 56092 28556 35248 35266 64481 64481 0.08352726696296031 YIIIHNEII 9 Unmodified _YIIIHNEII_ 0 0 0 MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.3265380859375 2 564.326599 1126.63865 0.36361 0.0002052 -0.0060989 -3.4418E-06 0.35751 0.00020175 564.32670885661 71.341 0.39234 74.716 74.515 74.908 3.3751 43 30 2 0 0 0 0.17897 1 17401 17401 22.736 0 1 116340 56093 15804 35249 35267 64482 64482 0.08039175545513899 YIIIHNEII 9 Unmodified _YIIIHNEII_ 0 0 0 MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.8285522460938 2 564.326599 1126.63865 0.44915 0.00025347 -0.18635 -0.00010516 0.2628 0.0001483 564.3263736448553 71.647 0.5399 74.866 74.652 75.192 3.2188 58 40 2 0 0 0 0.32682 1 17600 17600 12.241 0 1 112820 56094 15804 35249 35267 64483 64483 0.08039175545513899 YIIIHNEII 9 Unmodified _YIIIHNEII_ 0 0 0 MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|18|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 564.326599 1126.63865 0.36361 0.0002052 -0.0060989 -3.4418E-06 0.35751 0.00020175 564.32670885661 71.341 0.39234 74.716 74.515 74.908 3.3751 0 0 NaN 22.736 43 30 2 NaN NaN NaN NaN 0 NaN NaN 0 116340 56095 15804 35249 35267 0.08039175545513899 YIIIRGVKW 9 Unmodified _YIIIRGVKW_ 0 0 0 L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|29|3|sense L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|29|3|sense L1ME2_dup7503|chrX:101470619-101471455:-|1.0228476594710667|0.270783552244603|1.92|151.0|29|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 574.292724609375 2 574.352951 1146.69135 0.48734 0.0002799 1.4638 0.00084075 1.9511 0.0011206 574.3535934482809 62.852 0.12106 66.361 66.299 66.42 3.5091 11 8 2 0 0 0 0.12527 1 14010 14010 0.6015 0 1 60861 56096 12524 35250 35268 64484 64484 0.12387178399012555 YIIIVVLLFIF 11 Unmodified _YIIIVVLLFIF_ 0 0 0 REV__L1MC4_dup22665|chr18:62927084-62928163:+|1.5579258709709416|0.0090858533070542|7.42|151.0|45|1|anti-sense REV__L1MC4_dup22665|chr18:62927084-62928163:+|1.5579258709709416|0.0090858533070542|7.42|151.0|45|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 451.1937255859375 3 451.624587 1351.85193 0.088241 3.9852E-05 -0.82625 -0.00037315 -0.738 -0.0003333 451.6244679278924 45.176 0.52225 48.813 48.469 48.991 3.6372 68 33 4 0 0 0 22.551 1 8651 8651 0.50596 0.34663 1 265540 + 56097 26884 35251 35269 64485 64485 0.19008088272494206 YIILITSF 8 Unmodified _YIILITSF_ 0 0 0 Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|34|2|anti-sense Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|34|2|anti-sense Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|34|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2853698730469 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 43.699 1 47.209 46.709 47.709 3.5103 0 0 0 0.40404 1 8231 8231 5.2307 0 1 56098 445 35252 35270 64486 64486 0.07273314222459248 YIILITSF 8 Unmodified _YIILITSF_ 0 0 0 Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|34|2|anti-sense Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|34|2|anti-sense Charlie13a_dup339|chrX:45097617-45098215:-|1.3300900962105324|0.1511383173115625|3.14|150.0|34|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.285400390625 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 39.123 1 42.779 42.279 43.279 3.6557 0 0 0 0.40364 1 6804 6804 5.7604 0 1 56099 445 35252 35270 64487 64487 0.07273314222459248 YIIMQSLKV 9 Unmodified _YIIMQSLKV_ 0 0 0 L1ME4c_dup6790|chr14:50781929-50782669:+|1.0573553109597813|0.016999021473252|5.96|151.0|24|3|sense L1ME4c_dup6790|chr14:50781929-50782669:+|1.0573553109597813|0.016999021473252|5.96|151.0|24|3|sense L1ME4c_dup6790|chr14:50781929-50782669:+|1.0573553109597813|0.016999021473252|5.96|151.0|24|3|sense MSMS UPN48_class_I_Rep_1 5 547.8196411132812 2 547.817553 1093.62055 NaN NaN NaN NaN NaN NaN NaN 93.489 1 97.112 96.612 97.612 3.6234 0 0 0 0.35339 1 22470 22470 7.9102 0 1 56100 12955 35253 35271 64488 64488 0.0774871729915958 YIIRKPIIL 9 Unmodified _YIIRKPIIL_ 0 0 0 HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense;HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|57|2|sense;HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|99|3|sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense MSMS UPN47_class_I_Rep_2 3 564.8812866210938 2 564.878802 1127.74305 NaN NaN NaN NaN NaN NaN NaN 109.64 1 113.17 112.67 113.67 3.5307 0 0 0 0.4007 1 26718 26718 0.52476 0 1 56101 8414 35254 35272 64489 64489 0.18428922092880384 YIIRKPIIL 9 Unmodified _YIIRKPIIL_ 0 0 0 HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense;HERVS71-int_dup62|chr8:8138893-8142060:+|2.2554646107551046|0.1732625757600994|3.7|151.0|57|2|sense;HERVS71-int_dup36|chr4:9600389-9603574:+|2.2759369735658828|0.1471937127111558|3.95|150.0|99|3|sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense HERVS71-int_dup67|chr8:12523604-12525944:-|6.12239905182281|0.2577259720822655|4.57|151.0|66|3|sense MSMS UPN47_class_I_Rep_3 4 564.8815307617188 2 564.878802 1127.74305 NaN NaN NaN NaN NaN NaN NaN 109.64 1 113.18 112.68 113.68 3.5347 0 0 0 0.39428 1 26943 26943 2.0598 0 1 56102 8414 35254 35272 64490 64490 0.18428922092880384 YIITEEISR 9 Unmodified _YIITEEISR_ 0 0 0 L1MCa_dup4007|chr9:92703784-92704581:-|1.1787211238154207|0.0119595474748218|6.62|151.0|30|3|sense L1MCa_dup4007|chr9:92703784-92704581:-|1.1787211238154207|0.0119595474748218|6.62|151.0|30|3|sense L1MCa_dup4007|chr9:92703784-92704581:-|1.1787211238154207|0.0119595474748218|6.62|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.3189697265625 2 562.303321 1122.59209 0.51828 0.00029143 -0.45111 -0.00025366 0.067165 3.7767E-05 562.3029775081918 55.99 1.0702 59.295 58.855 59.925 3.3046 158 63 3 0 0 0 0.31407 1 12708 12708 13.042 0.80181 1 411620 56103 11804 35255 35273 64491 64491 0.035696909235639396 YIITGSLFIT 10 Unmodified _YIITGSLFIT_ 0 0 0 REV__L1ME3F_dup299|chr1:182871013-182871811:+|1.0959713297338485|0.2163011214174433|2.34|151.0|37|1|anti-sense REV__L1ME3F_dup299|chr1:182871013-182871811:+|1.0959713297338485|0.2163011214174433|2.34|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_1 5 564.3197021484375 2 564.320983 1126.62741 NaN NaN NaN NaN NaN NaN NaN 63.354 1 66.812 66.312 67.312 3.4578 0 0 0 0.53105 1 14256 14256 13.906 0 1 + 56104 28175 35256 35274 64492 64492 0.06916353451356372 YIITPRAF 8 Unmodified _YIITPRAF_ 0 0 0 L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|67|3|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|67|3|sense L1MC2_dup867|chr2:168488391-168490564:-|1.8638994871183128|0.0231923008129326|6.33|151.0|67|3|sense MSMS UPN47_class_I_Rep_3 4 490.78131103515625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 111.64 1 115.16 114.66 115.66 3.5207 0 0 0 0.40604 1 27409 27409 2.5775 0 1 56105 11287 35257 35275 64493 64493 0.05850965656804874 YIIVGGALGL 10 Unmodified _YIIVGGALGL_ 0 0 0 REV__ENSG00000175283|ENST00000372586|DOLK REV__ENSG00000175283|ENST00000372586|DOLK MULTI-MSMS UPN48_class_I_Rep_2 6 488.29669189453125 2 488.29731 974.580068 0.25152 0.00012282 0.056371 2.7526E-05 0.3079 0.00015034 488.2972772831881 76.788 0.85026 80.4 80.132 80.982 3.6116 132 86 2 0 0 0 0.49259 2 18086 18086;18302 12.532 0.89125 1 297280 + 56106 20550 35258 35276 64494;64495 64494 0.0917611897103825 YIIVGGALGL 10 Unmodified _YIIVGGALGL_ 0 0 0 REV__ENSG00000175283|ENST00000372586|DOLK REV__ENSG00000175283|ENST00000372586|DOLK MSMS UPN48_class_I_Rep_3 7 488.2967834472656 2 488.29731 974.580068 NaN NaN NaN NaN NaN NaN NaN 77.367 1 80.969 80.469 81.469 3.6016 0 0 0 0.53105 1 18271 18271 7.9102 0.62092 1 + 56107 20550 35258 35276 64496 64496 0.0917611897103825 YIIVLYFY 8 Unmodified _YIIVLYFY_ 0 0 0 Tigger3b_dup5875|chr18:36012087-36012675:+|1.0679929276686797|0.0878303943455931|3.6|150.0|36|2|anti-sense Tigger3b_dup5875|chr18:36012087-36012675:+|1.0679929276686797|0.0878303943455931|3.6|150.0|36|2|anti-sense Tigger3b_dup5875|chr18:36012087-36012675:+|1.0679929276686797|0.0878303943455931|3.6|150.0|36|2|anti-sense MSMS UPN48_class_I_Rep_3 7 547.3035888671875 2 547.302062 1092.58957 NaN NaN NaN NaN NaN NaN NaN 22.134 1 25.849 25.349 26.349 3.7144 0 0 0 0.40738 1 2211 2211 0.79363 0 1 56108 33405 35259 35277 64497 64497 0.04697887256565991 YIIWSVHVL 9 Unmodified _YIIWSVHVL_ 0 0 0 REV__L1ME3A_dup11521|chr13:21419300-21419810:+|1.6067230299541166|0.0134237587941191|6.9|151.0|29|2|anti-sense REV__L1ME3A_dup11521|chr13:21419300-21419810:+|1.6067230299541166|0.0134237587941191|6.9|151.0|29|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 565.825439453125 2 565.32386 1128.63317 0.49584 0.00028031 -0.099021 -5.5979E-05 0.39682 0.00022433 565.3237893107289 71.508 0.44076 75.035 74.823 75.264 3.5266 48 38 2 0 0 0 0.12034 1 16572 16572 7.2892 2.96 1 133490 + 56109 27985 35260 35278 64498 64498 0.0739949675371463 YIIYACNKF 9 Unmodified _YIIYACNKF_ 0 0 0 L1PB4_dup593|chr2:68792263-68795977:-|9.96268775687938|0.1171059224321497|6.41|151.0|41|1|sense L1PB4_dup593|chr2:68792263-68795977:-|9.96268775687938|0.1171059224321497|6.41|151.0|41|1|sense L1PB4_dup593|chr2:68792263-68795977:-|9.96268775687938|0.1171059224321497|6.41|151.0|41|1|sense MSMS UPN48_class_I_Rep_3 7 567.7857666015625 2 567.786253 1133.55795 NaN NaN NaN NaN NaN NaN NaN 66.405 1 69.913 69.413 70.413 3.5077 0 0 0 0.35339 1 15079 15079 7.9102 0.62092 1 56110 15336 35261 35279 64499 64499 -0.0034842876902985154 YIKGFESEF 9 Unmodified _YIKGFESEF_ 0 0 0 REV__ENSG00000082781|ENST00000296181|ITGB5 REV__ENSG00000082781|ENST00000296181|ITGB5 MSMS UPN48_class_I_Rep_3 7 560.2718505859375 2 560.27149 1118.52843 NaN NaN NaN NaN NaN NaN NaN 56.292 1 59.835 59.335 60.335 3.5427 0 0 0 0.3377 1 12010 12010 8.7454 0 1 + 56111 17924 35262 35280 64500 64500 -0.02609669513526569 YIKKIIDH 8 Unmodified _YIKKIIDH_ 0 0 0 L1M5_dup735|chr1:43768458-43769420:+|1.3842873967316658|0.0262626896288693|5.72|151.0|8|1|sense L1M5_dup735|chr1:43768458-43769420:+|1.3842873967316658|0.0262626896288693|5.72|151.0|8|1|sense L1M5_dup735|chr1:43768458-43769420:+|1.3842873967316658|0.0262626896288693|5.72|151.0|8|1|sense MSMS UPN46_class_I_Rep_3 1 515.30859375 2 515.30821 1028.60187 NaN NaN NaN NaN NaN NaN NaN 90.005 1 90.005 89.505 90.505 0 0 0 0 0.40746 1 21684 21684 0.69038 0 1 56112 9207 35263 35281 64501 64501 0.08870923719609891 YIKKLKPLYN 10 Unmodified _YIKKLKPLYN_ 0 0 0 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 MSMS UPN47_class_I_Rep_3 4 427.2642822265625 3 427.263941 1278.76999 NaN NaN NaN NaN NaN NaN NaN 88.591 1 91.984 91.484 92.484 3.3931 0 0 0 0.53105 1 22220 22220 0.13989 0 1 56113 2221 35264 35282 64502 64502 0.14175985913425393 YIKKRKNF 8 Unmodified _YIKKRKNF_ 0 0 0 L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|53|3|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|53|3|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|53|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.8350830078125 2 548.834926 1095.6553 0.15402 8.4534E-05 0.21546 0.00011825 0.36949 0.00020279 548.8349539064046 30.911 0.046566 30.911 30.896 30.943 0 4 2 2 0 0 0 0.82752 1 5107 5107 0.69038 0 1 393940 56114 9267 35265 35283 64503 64503 0.11129721222141598 YIKKRKNF 8 Unmodified _YIKKRKNF_ 0 0 0 L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|53|3|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|53|3|sense L1MA1_dup160|chr1:174313227-174315621:-|1.166868808680536|0.1112392998513961|3.39|149.0|53|3|sense MSMS UPN47_class_I_Rep_3 4 548.8349609375 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 115.01 1 118.49 117.99 118.99 3.4802 0 0 0 0.40746 1 28263 28263 0.69038 0 1 56115 9267 35265 35283 64504 64504 0.11129721222141598 YIKLALAL 8 Unmodified _YIKLALAL_ 0 0 0 L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|103|2|sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|103|2|sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|103|2|sense MSMS UPN46_class_I_Rep_3 1 452.79681396484375 2 452.796946 903.57934 NaN NaN NaN NaN NaN NaN NaN 22.96 1 22.96 22.46 23.46 0 0 0 0 0.40798 1 2805 2805 0 0 1 56116 8503 35266 35284 64505 64505 0.12369324321969088 YIKLALAL 8 Unmodified _YIKLALAL_ 0 0 0 L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|103|2|sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|103|2|sense L1M1_dup1898|chr3:160588140-160593555:+|1.2559795278925467|0.0359135423721169|5.13|151.0|103|2|sense MSMS UPN46_class_I_Rep_3 1 452.7962341308594 2 452.796946 903.57934 NaN NaN NaN NaN NaN NaN NaN 23.916 1 23.916 23.416 24.416 0 0 0 0 0.40798 1 3071 3071 0 0 1 56117 8503 35266 35284 64506 64506 0.12369324321969088 YIKNHLYII 9 Unmodified _YIKNHLYII_ 0 0 0 L1MB8_dup4618|chr5:57251216-57252112:-|1.4813209136096113|0.1241649783253629|3.58|151.0|25|2|sense L1MB8_dup4618|chr5:57251216-57252112:-|1.4813209136096113|0.1241649783253629|3.58|151.0|25|2|sense L1MB8_dup4618|chr5:57251216-57252112:-|1.4813209136096113|0.1241649783253629|3.58|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 588.8427734375 2 588.842416 1175.67028 NaN NaN NaN NaN NaN NaN NaN 64.276 1 64.276 63.776 64.776 0 0 0 0 0.39428 1 14458 14458 2.0598 0.21551 1 56118 11007 35267 35285 64507 64507 0.08947168299459918 YIKNKLVF 8 Unmodified _YIKNKLVF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS UPN47_class_I_Rep_1 2 513.31494140625 2 512.813128 1023.6117 -0.16288 -8.3528E-05 -0.041187 -2.1121E-05 -0.20407 -0.00010465 512.8130118422116 39.198 0.62267 42.863 42.522 43.145 3.6652 63 40 2 0 0 0 0.82752 1 7691 7691 18.135 4.6271 1 48130 56119 4014 35268 35286 64508 64508 0.10084111724984268 YIKNKLVF 8 Unmodified _YIKNKLVF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MSMS UPN47_class_I_Rep_2 3 512.812255859375 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 40.02 1 43.391 42.891 43.891 3.3712 0 0 0 0.40604 1 7923 7923 2.5775 0 1 56120 4014 35268 35286 64509 64509 0.10084111724984268 YIKNKLVF 8 Unmodified _YIKNKLVF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MSMS UPN47_class_I_Rep_3 4 512.8121337890625 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 39.901 1 43.138 42.638 43.638 3.2372 0 0 0 0.40404 1 7935 7935 5.2307 0 1 56121 4014 35268 35286 64510 64510 0.10084111724984268 YIKPYICKV 9 Unmodified _YIKPYICKV_ 0 0 0 L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|41|3|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|41|3|anti-sense L1ME1_dup29439|chr20:1488660-1489383:+|2.0822655261581504|0.0830023679060202|4.65|151.0|41|3|anti-sense MSMS UPN48_class_I_Rep_1 5 563.822998046875 2 563.820095 1125.62564 NaN NaN NaN NaN NaN NaN NaN 45.919 1 49.435 48.935 49.935 3.5162 0 0 0 0.39518 1 8908 8908 1.8442 0.36234 1 56122 12377 35269 35287 64511 64511 0.0678502116177242 YIKTHALRFH 10 Unmodified _YIKTHALRFH_ 0 0 0 Looper_dup32|chr1:235688000-235688703:+|2.280337114432778|0.071573499171799|4.99|151.0|35|2|anti-sense Looper_dup32|chr1:235688000-235688703:+|2.280337114432778|0.071573499171799|4.99|151.0|35|2|anti-sense Looper_dup32|chr1:235688000-235688703:+|2.280337114432778|0.071573499171799|4.99|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 643.3624267578125 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 52.833 1 56.028 55.528 56.528 3.1948 0 0 0 0.53105 1 11868 11868 1.4819 0 1 56123 15489 35270 35288 64512 64512 0.07815893653832973 YIKYKRKV 8 Unmodified _YIKYKRKV_ 0 0 0 MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|68|3|sense MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|68|3|sense MER57A-int_dup852|chr8:124340848-124343117:+|1.274515994193723|0.0175701007490043|6.18|149.0|68|3|sense MSMS UPN48_class_I_Rep_1 5 549.34716796875 2 549.345126 1096.6757 NaN NaN NaN NaN NaN NaN NaN 51.787 1 55.31 54.81 55.81 3.5227 0 0 0 0.40581 1 10715 10715 2.8892 0 1 56124 16121 35271 35289 64513 64513 0.13122891881948817 YILEVLSNQ 9 Unmodified _YILEVLSNQ_ 0 0 0 REV__Cheshire_dup206|chr3:125261812-125263071:-|5.450108481235561|0.0948304153168655|5.84|151.0|1|1|sense REV__Cheshire_dup206|chr3:125261812-125263071:-|5.450108481235561|0.0948304153168655|5.84|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 539.7684936523438 2 539.792589 1077.57063 NaN NaN NaN NaN NaN NaN NaN 62.341 1 62.341 61.841 62.841 0 0 0 0 0.35339 1 13931 13931 7.9102 1.5561 1 + 56125 17405 35272 35290 64514 64514 0.03494305894832905 YILFFNFQ 8 Unmodified _YILFFNFQ_ 0 0 0 L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|69|3|anti-sense L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|69|3|anti-sense L1MC3_dup3057|chr4:83091021-83091993:-|2.9423598576550734|0.1802324918489955|4.03|151.0|69|3|anti-sense MSMS UPN47_class_I_Rep_3 4 546.2821655273438 2 546.28166 1090.54877 NaN NaN NaN NaN NaN NaN NaN 35.309 1 38.573 38.073 39.073 3.2639 0 0 0 0.40738 1 6525 6525 0.79363 0 1 56126 11330 35273 35291 64515 64515 0.007115459369288146 YILFLRRWIIL 11 Unmodified _YILFLRRWIIL_ 0 0 0 L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|3|1|sense L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|3|1|sense L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 502.6501159667969 3 502.650018 1504.92823 0.1988 9.9928E-05 0.32183 0.00016177 0.52063 0.00026169 502.9845705981332 105.87 0.65805 109.5 109.11 109.76 3.6277 203 85 3 0 0 0 0.68024 1 25434 25434 0.50596 0.41111 1 1602500 56127 9496 35274 35292 64516 64516 0.1959590489252605 YILFSCFKM 9 Unmodified _YILFSCFKM_ 0 0 0 L1MA3_dup378|chr1:174482990-174483575:-|1.2111231161820986|0.0122938461924631|6.62|151.0|41|2|anti-sense L1MA3_dup378|chr1:174482990-174483575:-|1.2111231161820986|0.0122938461924631|6.62|151.0|41|2|anti-sense L1MA3_dup378|chr1:174482990-174483575:-|1.2111231161820986|0.0122938461924631|6.62|151.0|41|2|anti-sense MSMS UPN48_class_I_Rep_1 5 576.2860717773438 2 576.285031 1150.55551 NaN NaN NaN NaN NaN NaN NaN 62.588 1 66.05 65.55 66.55 3.4625 0 0 0 0.38299 1 14020 14020 4.756 0 1 56128 9540 35275 35293 64517 64517 -0.013746004983431703 YILGRVPRR 9 Unmodified _YILGRVPRR_ 0 0 0 REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF MSMS UPN46_class_I_Rep_3 1 565.3522338867188 2 565.351274 1128.688 NaN NaN NaN NaN NaN NaN NaN 90.421 1 90.421 89.921 90.921 0 0 0 0 0.26661 1 21806 21806 12.532 1.7076 1 + 56129 22021 35276 35294 64518 64518 0.12879928344977998 YILHICFIF 9 Unmodified _YILHICFIF_ 0 0 0 REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|76|1|anti-sense REV__Tigger4_dup959|chr10:63340970-63343057:+|4.443654778210893|0.0284942546168763|7.28|151.0|76|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 584.2197875976562 2 584.814813 1167.61507 0.50156 0.00029332 2.0387 0.0011923 2.5403 0.0014856 584.8160234089082 61.485 0.22825 64.998 64.907 65.135 3.5129 22 17 2 0 0 0 0.12182 1 13577 13577 5.2307 0 1 89840 + 56130 32788 35277 35295 64519 64519 0.03797038507354955 YILHLLWVRFV 11 Unmodified _YILHLLWVRFV_ 0 0 0 Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|59|1|anti-sense Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|59|1|anti-sense Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|59|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 486.95843505859375 3 486.958852 1457.85473 0.23721 0.00011551 0.50851 0.00024763 0.74573 0.00036314 486.95892782905 94.359 0.53771 98.26 98.217 98.755 3.9016 113 72 2 0 0 0 0.68024 1 22409 22409 0.50596 0 1 220080 56131 33093 35278 35296 64520 64520 0.14411356450000312 YILHPKVR 8 Unmodified _YILHPKVR_ 0 0 0 REV__L1MC5_dup14328|chr19:37940319-37940648:-|1.1222128133406146|0.0050118474303566|7.81|151.0|27|3|anti-sense REV__L1MC5_dup14328|chr19:37940319-37940648:-|1.1222128133406146|0.0050118474303566|7.81|151.0|27|3|anti-sense MSMS UPN48_class_I_Rep_1 5 513.3167724609375 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 61.354 1 64.822 64.322 65.322 3.4678 0 0 0 0.40738 1 13643 13643 0.79363 0 1 + 56132 27066 35279 35297 64521 64521 0.10686049676360199 YILILHLF 8 Unmodified _YILILHLF_ 0 0 0 L1M5_dup1481|chr1:84535033-84535797:-|1.4522021576738982|0.0786679400248181|4.21|151.0|58|3|anti-sense L1M5_dup1481|chr1:84535033-84535797:-|1.4522021576738982|0.0786679400248181|4.21|151.0|58|3|anti-sense L1M5_dup1481|chr1:84535033-84535797:-|1.4522021576738982|0.0786679400248181|4.21|151.0|58|3|anti-sense MSMS UPN48_class_I_Rep_2 6 516.3163452148438 2 516.318046 1030.62154 NaN NaN NaN NaN NaN NaN NaN 73.182 1 76.746 76.246 77.246 3.5645 0 0 0 0.4032 1 17173 17173 6.3541 0 1 56133 9099 35280 35298 64522 64522 0.10745299730365332 YILKFTHVP 9 Unmodified _YILKFTHVP_ 0 0 0 L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|81|3|anti-sense L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|81|3|anti-sense L1ME2_dup6319|chr8:73542250-73543436:+|1.715023226156017|0.3260886141423144|2.39|151.0|81|3|anti-sense MSMS UPN47_class_I_Rep_2 3 559.3035278320312 2 559.32386 1116.63317 NaN NaN NaN NaN NaN NaN NaN 41.42 1 44.786 44.286 45.286 3.3655 0 0 0 0.38639 1 8347 8347 3.9444 0.66309 1 56134 12513 35281 35299 64523 64523 0.07951496753685205 YILKKLLKL 9 Unmodified _YILKKLLKL_ 0 0 0 REV__L1M4b_dup3933|chr18:13595665-13599473:-|1.9751199745175383|0.0548403871617865|5.17|151.0|74|2|sense REV__L1M4b_dup3933|chr18:13595665-13599473:-|1.9751199745175383|0.0548403871617865|5.17|151.0|74|2|sense MSMS UPN46_class_I_Rep_3 1 566.1337280273438 2 566.396828 1130.7791 NaN NaN NaN NaN NaN NaN NaN 42.066 1 42.066 41.566 42.566 0 0 0 0 0.4029 1 8297 8297 0 0 1 + 56135 24551 35282 35300 64524 64524 0.21894379269724595 YILLLRWFIRI 11 Unmodified _YILLLRWFIRI_ 0 0 0 REV__L1ME3G_dup2724|chr3:23868812-23869273:-|2.008191544278124|0.0444112037519794|5.5|151.0|13|3|sense REV__L1ME3G_dup2724|chr3:23868812-23869273:-|2.008191544278124|0.0444112037519794|5.5|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 502.6503601074219 3 502.650018 1504.92823 0.29793 0.00014975 0.13591 6.8316E-05 0.43384 0.00021807 502.64988453019026 105.56 0.77919 109.25 108.99 109.77 3.6901 211 109 3 0 0 0 0.68024 1 24968 24968 0.50596 0 1 1722500 + 56136 28193 35283 35301 64525 64525 0.19595904892503313 YILLLRWFIRI 11 Unmodified _YILLLRWFIRI_ 0 0 0 REV__L1ME3G_dup2724|chr3:23868812-23869273:-|2.008191544278124|0.0444112037519794|5.5|151.0|13|3|sense REV__L1ME3G_dup2724|chr3:23868812-23869273:-|2.008191544278124|0.0444112037519794|5.5|151.0|13|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 502.6499938964844 3 502.650018 1504.92823 0.26376 0.00013258 0.048254 2.4255E-05 0.31202 0.00015683 502.64987734190885 105.71 0.62109 109.41 109.17 109.79 3.702 150 90 2 0 0 0 0.68024 1 24943 24943 0.50596 0 1 902800 + 56137 28193 35283 35301 64526 64526 0.19595904892503313 YILLSTVV 8 Unmodified _YILLSTVV_ 0 0 0 L1MA3_dup6680|chr12:9018694-9019608:+|1.4083784154879329|0.070323890584981|4.32|151.0|65|3|anti-sense L1MA3_dup6680|chr12:9018694-9019608:+|1.4083784154879329|0.070323890584981|4.32|151.0|65|3|anti-sense L1MA3_dup6680|chr12:9018694-9019608:+|1.4083784154879329|0.070323890584981|4.32|151.0|65|3|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2795715332031 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 44.734 1 47.978 47.478 48.478 3.2441 0 0 0 0.40625 1 9409 9409 2.3027 0 1 56138 9613 35284 35302 64527 64527 0.08561027705434299 YILLVRKTY 9 Unmodified _YILLVRKTY_ 0 0 0 REV__nc|ENSG00000180667|Q5VVQ6-2|YOD1 REV__nc|ENSG00000180667|Q5VVQ6-2|YOD1 MSMS UPN48_class_I_Rep_1 5 584.8587646484375 2 584.858067 1167.70158 NaN NaN NaN NaN NaN NaN NaN 83.945 1 87.542 87.042 88.042 3.5973 0 0 0 0.40098 1 20090 20090 0.45834 0 1 + 56139 20710 35285 35303 64528 64528 0.12443741333572689 YILMPKWK 8 Unmodified _YILMPKWK_ 0 0 0 REV__Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|44|3|sense REV__Tigger1_dup11984|chr22:24377645-24379037:-|6.409181612860676|0.1081363394173474|5.89|151.0|44|3|sense MSMS UPN46_class_I_Rep_3 1 539.8108520507812 2 539.809531 1077.60451 NaN NaN NaN NaN NaN NaN NaN 62.186 1 62.186 61.686 62.686 0 0 0 0 0.35537 1 13891 13891 20.871 1.6142 1 + 56140 32370 35286 35304 64529 64529 0.06881055852909412 YILNVIKP 8 Unmodified _YILNVIKP_ 0 0 0 L1MEc_dup11810|chr10:38047655-38048400:+|1.4720034004074227|0.1915020326634401|2.94|151.0|31|1|anti-sense L1MEc_dup11810|chr10:38047655-38048400:+|1.4720034004074227|0.1915020326634401|2.94|151.0|31|1|anti-sense L1MEc_dup11810|chr10:38047655-38048400:+|1.4720034004074227|0.1915020326634401|2.94|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 480.3006591796875 2 480.299853 958.585153 NaN NaN NaN NaN NaN NaN NaN 58.24 1 61.406 60.906 61.906 3.1658 0 0 0 0.39624 1 13518 13518 9.3474 0 1 56141 13009 35287 35305 64530 64530 0.10420422833669818 YILPKNVL 8 Unmodified _YILPKNVL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN47_class_I_Rep_1 2 480.2996826171875 2 480.299853 958.585153 0.11391 5.4713E-05 0.10462 5.0249E-05 0.21853 0.00010496 480.29976406280673 56.837 0.77737 60.294 60.063 60.841 3.4572 159 71 3 0 0 0 0.82752 3 12991 12991;13031;13070 32.117 5.7757 1 543430 56142 4671 35288 35306 64531;64532;64533 64531 0.10420422833658449 YILPKNVL 8 Unmodified _YILPKNVL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN47_class_I_Rep_2 3 480.2991027832031 2 480.299853 958.585153 0.25093 0.00012052 -0.057258 -2.7501E-05 0.19367 9.3018E-05 480.2997031423164 57.129 0.25688 60.42 60.199 60.456 3.2912 43 23 2 0 0 0 0.82752 2 13080 13080;13121 24.674 5.2349 1 753220 56143 4671 35288 35306 64534;64535 64534 0.10420422833658449 YILPKNVL 8 Unmodified _YILPKNVL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS UPN47_class_I_Rep_2 3 480.2997131347656 2 480.299853 958.585153 NaN NaN NaN NaN NaN NaN NaN 57.217 1 60.508 60.008 61.008 3.2912 0 0 0 0.31372 1 13158 13158 30.225 5.5509 1 56144 4671 35288 35306 64536 64536 0.10420422833658449 YILPKNVL 8 Unmodified _YILPKNVL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS UPN47_class_I_Rep_3 4 480.3002624511719 2 480.299853 958.585153 0.0094432 4.5355E-06 0.1892 9.0872E-05 0.19864 9.5407E-05 480.299843215784 57.345 0.99751 60.513 60.207 61.205 3.1681 172 83 3 0 0 0 0.82752 4 13210 13210;13252;13295;13334 30.225 5.5509 1 600020 56145 4671 35288 35306 64537;64538;64539;64540 64537 0.10420422833658449 YILPKNVL 8 Unmodified _YILPKNVL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000575116.1_1_17:1555319-1557183:-|nuORF;ENST00000576585.1_1_17:1556769-1557303:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH UPN47_class_I_Rep_2 3 2 480.299853 958.585153 0.25159 0.00012084 -0.9003 -0.00043241 -0.6487 -0.00031157 480.298856202442 56.865 0.03336 60.165 60.151 60.184 3.3009 -0.064364 -0.00096155 NaN 32.117 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 33711 56146 4671 35288 35306 0.10420422833658449 YILPSVSFGF 10 Unmodified _YILPSVSFGF_ 0 0 0 L1MB4_dup4350|chr9:93104372-93105161:-|1.2793405786989245|0.0829862546676432|3.95|151.0|37|1|anti-sense L1MB4_dup4350|chr9:93104372-93105161:-|1.2793405786989245|0.0829862546676432|3.95|151.0|37|1|anti-sense L1MB4_dup4350|chr9:93104372-93105161:-|1.2793405786989245|0.0829862546676432|3.95|151.0|37|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 565.3005981445312 2 565.30005 1128.58555 0.52762 0.00029826 -0.092661 -5.2381E-05 0.43496 0.00024588 565.3000312528682 64.152 0.64494 67.627 67.295 67.94 3.4743 78 47 2 0 0 0 0.41718 1 14537 14537 18.146 3.3081 1 220340 56147 10522 35289 35307 64541 64541 0.026397977628448643 YILPSVSFGF 10 Unmodified _YILPSVSFGF_ 0 0 0 L1MB4_dup4350|chr9:93104372-93105161:-|1.2793405786989245|0.0829862546676432|3.95|151.0|37|1|anti-sense L1MB4_dup4350|chr9:93104372-93105161:-|1.2793405786989245|0.0829862546676432|3.95|151.0|37|1|anti-sense L1MB4_dup4350|chr9:93104372-93105161:-|1.2793405786989245|0.0829862546676432|3.95|151.0|37|1|anti-sense MSMS UPN48_class_I_Rep_3 7 565.2875366210938 2 565.30005 1128.58555 NaN NaN NaN NaN NaN NaN NaN 64.242 1 67.75 67.25 68.25 3.5083 0 0 0 0.53105 1 14428 14428 25.399 2.2509 1 56148 10522 35289 35307 64542 64542 0.026397977628448643 YILQPINV 8 Unmodified _YILQPINV_ 0 0 0 REV__L1ME3E_dup4183|chr18:47146249-47147040:+|1.0006118407869131|0.1156021084942457|3.11|151.0|45|3|anti-sense REV__L1ME3E_dup4183|chr18:47146249-47147040:+|1.0006118407869131|0.1156021084942457|3.11|151.0|45|3|anti-sense MSMS UPN47_class_I_Rep_2 3 480.2998352050781 2 480.28166 958.548768 NaN NaN NaN NaN NaN NaN NaN 57.339 1 60.63 60.13 61.13 3.2912 0 0 0 0.39408 1 13195 13195 10.183 0.83596 1 + 56149 28163 35290 35308 64543 64543 0.06783545936934843 YILQRKVKK 9 Unmodified _YILQRKVKK_ 0 0 0 REV__L1MB8_dup12999|chr14:91054804-91055498:+|1.0199881587220836|0.0048496298403031|7.72|151.0|10|2|sense REV__L1MB8_dup12999|chr14:91054804-91055498:+|1.0199881587220836|0.0048496298403031|7.72|151.0|10|2|sense MSMS UPN46_class_I_Rep_3 1 588.3853149414062 2 588.384783 1174.75501 NaN NaN NaN NaN NaN NaN NaN 61.79 1 61.79 61.29 62.29 0 0 0 0 0.4007 1 13775 13775 0.52476 0 1 + 56150 26364 35291 35309 64544 64544 0.17462538836048225 YILRGPLN 8 Unmodified _YILRGPLN_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|143|2|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|143|2|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|143|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 473.7807922363281 2 473.279452 944.544351 0.095537 4.5216E-05 -0.054841 -2.5955E-05 0.040696 1.9261E-05 473.27939821648545 50.378 0.60265 53.903 53.624 54.227 3.5246 62 40 2 0 0 0 0.82752 1 10259 10259 8.5933 0 1 100080 56151 15375 35292 35310 64545 64545 0.06986081514025955 YILRGPLN 8 Unmodified _YILRGPLN_ 0 0 0 L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|143|2|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|143|2|anti-sense L1PBa_dup1571|chr10:58208252-58210982:-|3.2838170638754303|0.1006970724037641|5.03|151.0|143|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 473.279296875 2 473.279452 944.544351 0.18085 8.5591E-05 -0.32237 -0.00015257 -0.14152 -6.6981E-05 473.27923664100626 50.161 0.53053 53.856 53.639 54.169 3.6946 53 35 2 0 0 0 0.82752 1 10239 10239 13.508 0 1 155660 56152 15375 35292 35310 64546 64546 0.06986081514025955 YILVDIYCVI 10 Unmodified _YILVDIYCVI_ 0 0 0 REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 405.22174072265625 3 405.222754 1212.64643 -0.7336 -0.00029727 -1.039 -0.00042101 -1.7726 -0.00071829 405.2224625480214 47.506 0.83852 50.855 50.209 51.048 3.3492 175 64 4 0 0 0 0.54078 3 10089 10089;10169;10211 3.5871 0 1 461230 + 56153 26343 35293 35311 64547;64548;64549 64547 0.04861566750764723 YILVDIYCVI 10 Unmodified _YILVDIYCVI_ 0 0 0 REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 405.22198486328125 3 405.222754 1212.64643 -0.70203 -0.00028448 -0.8306 -0.00033658 -1.5326 -0.00062106 405.22239376615266 47.903 0.88953 51.252 51.127 52.016 3.3492 79 53 2 0 0 0 0.54078 4 10359 10359;10421;10461;10510 3.5871 0 1 246010 + 56154 26343 35293 35311 64550;64551;64552;64553 64550 0.04861566750764723 YILVDIYCVI 10 Unmodified _YILVDIYCVI_ 0 0 0 REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 405.2221984863281 3 405.222754 1212.64643 -0.76501 -0.00031 -0.51512 -0.00020874 -1.2801 -0.00051874 405.22258730993633 47.601 0.7495 50.841 50.215 50.964 3.2405 129 57 3 0 0 0 0.54078 3 10234 10194;10234;10279 3.5871 0 1 417900 + 56155 26343 35293 35311 64554;64555;64556 64555 0.04861566750764723 YILVDIYCVI 10 Unmodified _YILVDIYCVI_ 0 0 0 REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense REV__L1MB8_dup11274|chr11:107302470-107304016:+|1.2684927145674196|0.3926860902951219|1.69|151.0|77|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 405.22161865234375 3 405.222754 1212.64643 -0.74127 -0.00030038 -0.70732 -0.00028662 -1.4486 -0.000587 405.2225068940285 47.763 0.93592 51.003 50.95 51.886 3.2405 121 67 3 0 0 0 0.54078 3 10507 10420;10458;10507 3.5871 0 1 396850 + 56156 26343 35293 35311 64557;64558;64559 64559 0.04861566750764723 YILVMICYW 9 Unmodified _YILVMICYW_ 0 0 0 REV__L1M4_dup9703|chr9:41001370-41001978:-|1.390683675624238|0.2894030592749914|2.26|150.0|22|1|anti-sense REV__L1M4_dup9703|chr9:41001370-41001978:-|1.390683675624238|0.2894030592749914|2.26|150.0|22|1|anti-sense MSMS UPN48_class_I_Rep_1 5 602.3004760742188 2 602.300681 1202.58681 NaN NaN NaN NaN NaN NaN NaN 113.18 1 116.81 116.31 117.31 3.6314 0 0 0 0.40038 1 27488 27488 0.6015 0 1 + 56157 24467 35294 35312 64560 64560 -0.006380274642651784 YILVPLSHL 9 Unmodified _YILVPLSHL_ 0 0 0 nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR nc|ENSG00000170820|P23945-2|FSHR nc|ENSG00000170820|P23945-2|FSHR MULTI-MSMS UPN47_class_I_Rep_1 2 527.3121948242188 2 527.81841 1053.62227 0.34384 0.00018149 -0.18246 -9.6304E-05 0.16139 8.5183E-05 527.8183591388552 76.41 0.41454 79.825 79.616 80.031 3.4149 35 29 2 0 0 0 0.15878 1 18952 18952 24.674 0 1 178060 56158 4489 35295 35313 64561 64561 0.09760094379430484 YILVPLSHL 9 Unmodified _YILVPLSHL_ 0 0 0 nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR nc|ENSG00000170820|P23945-2|FSHR nc|ENSG00000170820|P23945-2|FSHR MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 527.81841 1053.62227 0.18663 9.8506E-05 -0.071259 -3.7612E-05 0.11537 6.0894E-05 527.8182132282582 76.475 0.18345 79.797 79.67 79.853 3.3216 -0.014333 6.7901E-05 NaN 24.674 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 96971 56159 4489 35295 35313 0.09760094379430484 YILWFKAYLRL 11 Unmodified _YILWFKAYLRL_ 0 0 0 L1MEf_dup2832|chr4:88632066-88633940:+|1.9661840080423707|0.023183866264937|6.41|151.0|67|3|sense L1MEf_dup2832|chr4:88632066-88633940:+|1.9661840080423707|0.023183866264937|6.41|151.0|67|3|sense L1MEf_dup2832|chr4:88632066-88633940:+|1.9661840080423707|0.023183866264937|6.41|151.0|67|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 495.958984375 3 495.958741 1484.85439 0.25142 0.0001247 0.74804 0.000371 0.99946 0.00049569 495.95895338598746 96.36 0.22876 100.27 100.16 100.39 3.9084 68 32 3 0 0 0 0.68132 1 22842 22842 0.40827 0 1 348860 56160 13263 35296 35314 64562 64562 0.13135936730168396 YILWVLMHV 9 Unmodified _YILWVLMHV_ 0 0 0 L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|70|2|anti-sense L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|70|2|anti-sense L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_2 6 587.32666015625 2 587.328088 1172.64162 NaN NaN NaN NaN NaN NaN NaN 58.442 1 61.941 61.441 62.441 3.4987 0 0 0 0.39326 1 12729 12729 2.3027 0 1 56161 11203 35297 35315 64563 64563 0.0622072739865871 YILWVLMHV 9 Unmodified _YILWVLMHV_ 0 0 0 L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|70|2|anti-sense L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|70|2|anti-sense L1MC1_dup8808|chr10:92959112-92960501:+|1.0661498784360677|0.0630598242633783|4.08|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_3 7 587.3280029296875 2 587.328088 1172.64162 NaN NaN NaN NaN NaN NaN NaN 58.283 1 61.814 61.314 62.314 3.5317 0 0 0 0.40038 1 12615 12615 0.6015 0 1 56162 11203 35297 35315 64564 64564 0.0622072739865871 YILYKSVYIK 10 Unmodified _YILYKSVYIK_ 0 0 0 L1MB8_dup14060|chr16:69458131-69458489:-|1.0055549936076458|0.3937178290501987|1.35|151.0|7|2|sense L1MB8_dup14060|chr16:69458131-69458489:-|1.0055549936076458|0.3937178290501987|1.35|151.0|7|2|sense L1MB8_dup14060|chr16:69458131-69458489:-|1.0055549936076458|0.3937178290501987|1.35|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 645.3795166015625 2 645.378832 1288.74311 NaN NaN NaN NaN NaN NaN NaN 71.705 1 75.255 74.755 75.755 3.5505 0 0 0 0.53105 1 16748 16748 1.4819 0 1 56163 10947 35298 35316 64565 64565 0.11028877302237561 YILYLNALQ 9 Unmodified _YILYLNALQ_ 0 0 0 REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|170|3|anti-sense REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|170|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 555.8140258789062 2 555.813325 1109.6121 0.60884 0.0003384 -0.21497 -0.00011949 0.39386 0.00021892 555.8131258796085 63.581 0.70411 67.039 66.686 67.39 3.4578 94 57 2 0 0 0 0.18929 1 14364 14364 21.747 0 1 225310 + 56164 23710 35299 35317 64566 64566 0.061674866541807205 YILYLNALQ 9 Unmodified _YILYLNALQ_ 0 0 0 REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|170|3|anti-sense REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|170|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.8132934570312 2 555.813325 1109.6121 0.53943 0.00029982 0.037274 2.0717E-05 0.57671 0.00032054 555.8132273685504 63.453 0.67855 66.927 66.607 67.285 3.4738 79 56 2 0 0 0 0.18929 1 14201 14201 21.747 0.20967 1 336350 + 56165 23710 35299 35317 64567 64567 0.061674866541807205 YIMEYYLALN 10 Unmodified _YIMEYYLALN_ 0 0 0 L1ME3A_dup10572|chr11:75984570-75985731:-|1.0162572148704598|0.0444402258953379|4.52|151.0|28|2|sense L1ME3A_dup10572|chr11:75984570-75985731:-|1.0162572148704598|0.0444402258953379|4.52|151.0|28|2|sense L1ME3A_dup10572|chr11:75984570-75985731:-|1.0162572148704598|0.0444402258953379|4.52|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 647.3172607421875 2 646.815207 1291.61586 0.48645 0.00031464 -0.83036 -0.00053709 -0.34391 -0.00022245 646.8148075973767 77.892 0.36253 81.321 81.155 81.518 3.4289 60 35 3 0 0 0 0.52562 1 19401 19401 8.7454 2.5536 1 223840 56166 12621 35300 35318 64568 64568 -0.01828211634233412 YIMEYYLALN 10 Unmodified _YIMEYYLALN_ 0 0 0 L1ME3A_dup10572|chr11:75984570-75985731:-|1.0162572148704598|0.0444402258953379|4.52|151.0|28|2|sense L1ME3A_dup10572|chr11:75984570-75985731:-|1.0162572148704598|0.0444402258953379|4.52|151.0|28|2|sense L1ME3A_dup10572|chr11:75984570-75985731:-|1.0162572148704598|0.0444402258953379|4.52|151.0|28|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 647.3164672851562 2 646.815207 1291.61586 0.48277 0.00031226 -0.79734 -0.00051573 -0.31457 -0.00020347 646.8147131069807 78.095 0.40456 81.437 81.237 81.642 3.3428 67 43 2 0 0 0 0.54822 1 19429 19429 5.7319 0.83484 1 125350 56167 12621 35300 35318 64569 64569 -0.01828211634233412 YIMGLLLEW 9 Unmodified _YIMGLLLEW_ 0 0 0 ENST00000518968.1_1_8:50652851-50653445:-|nuORF ENST00000518968.1_1_8:50652851-50653445:-|nuORF ENST00000518968.1_1_8:50652851-50653445:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 569.30419921875 2 569.304278 1136.594 -0.072799 -4.1445E-05 0.43854 0.00024966 0.36574 0.00020822 569.304365852445 30.989 0.4678 34.719 34.573 35.041 3.7293 49 37 2 0 0 0 0.48846 1 5151 5151 1.8442 0.36234 1 76657 56168 7217 35301 35319 64570 64570 0.031170284078143595 YIMIGKCTLY 10 Unmodified _YIMIGKCTLY_ 0 0 0 L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|377|3|anti-sense L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|377|3|anti-sense L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|377|3|anti-sense MSMS UPN47_class_I_Rep_3 4 602.8088989257812 2 602.80887 1203.60319 NaN NaN NaN NaN NaN NaN NaN 38.07 1 41.311 40.811 41.811 3.2414 0 0 0 0.53105 1 7370 7370 1.4819 0 1 56169 10872 35302 35320 64571 64571 0.009530537018690666 YIMKGFLCM 9 Unmodified _YIMKGFLCM_ 0 0 0 REV__L1PA16_dup7968|chrX:15696397-15697236:-|3.0434336974764022|0.2310724414565779|3.72|151.0|36|1|anti-sense REV__L1PA16_dup7968|chrX:15696397-15697236:-|3.0434336974764022|0.2310724414565779|3.72|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_3 7 553.2658081054688 2 553.265784 1104.51702 NaN NaN NaN NaN NaN NaN NaN 20.624 1 24.29 23.79 24.79 3.6667 0 0 0 0.4029 1 1792 1792 0 0 1 + 56170 29346 35303 35321 64572 64572 -0.031062294044886585 YIMKWPVW 8 Unmodified _YIMKWPVW_ 0 0 0 REV__MER4A1_dup1718|chr13:45368269-45368758:+|2.550165995547982|0.4000388846790644|2.67|151.0|27|2|anti-sense REV__MER4A1_dup1718|chr13:45368269-45368758:+|2.550165995547982|0.4000388846790644|2.67|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_3 7 561.7944946289062 2 561.793881 1121.57321 NaN NaN NaN NaN NaN NaN NaN 57.335 1 60.867 60.367 61.367 3.5317 0 0 0 0.40738 1 12324 12324 0.79363 0 1 + 56171 31349 35304 35322 64573 64573 0.017284828188167012 YIMLILLDL 9 Unmodified _YIMLILLDL_ 0 0 0 REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|74|3|anti-sense REV__L1MB8_dup1511|chr2:68235197-68236243:-|2.449443321308514|0.0138122790038909|7.47|151.0|74|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.8294677734375 2 553.830129 1105.6457 0.41311 0.0002288 -0.36824 -0.00020394 0.044873 2.4852E-05 553.8298863743157 86.152 0.22731 86.152 86.031 86.258 0 26 20 2 0 0 0 0.48643 1 20567 20567 2.0598 0 1 239780 + 56172 26377 35305 35323 64574 64574 0.09710772101743714 YIMLLLWA 8 Unmodified _YIMLLLWA_ 0 0 0 REV__MSTA-int_dup1119|chr6:13255395-13256980:-|2.613527187356577|0.1424933072987639|4.2|151.0|4|1|sense REV__MSTA-int_dup1119|chr6:13255395-13256980:-|2.613527187356577|0.1424933072987639|4.2|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 511.79052734375 2 511.790807 1021.56706 NaN NaN NaN NaN NaN NaN NaN 39.836 1 43.073 42.573 43.573 3.2372 0 0 0 0.40581 1 7915 7915 2.8892 0 1 + 56173 31859 35306 35324 64575 64575 0.057139645873007794 YINARLETL 9 Unmodified _YINARLETL_ 0 0 0 REV__MER21B_dup1187|chr8:26323252-26323850:-|1.7293398648578542|0.2159075041230737|3.0|151.0|27|2|anti-sense REV__MER21B_dup1187|chr8:26323252-26323850:-|1.7293398648578542|0.2159075041230737|3.0|151.0|27|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.806396484375 2 546.806031 1091.59751 0.39608 0.00021658 -0.47406 -0.00025922 -0.077986 -4.2643E-05 546.8057391612234 46.183 0.57114 49.941 49.642 50.213 3.7579 52 35 2 0 0 0 0.28552 2 9005 8958;9005 14.838 0 1 126770 + 56174 31191 35307 35325 64576;64577 64577 0.05537414506034111 YINHPIPFI 9 Unmodified _YINHPIPFI_ 0 0 0 REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.3079223632812 2 557.30821 1112.60187 0.57836 0.00032232 -0.47323 -0.00026373 0.10513 5.8591E-05 557.3077560403614 64.937 0.43327 68.391 68.245 68.679 3.4541 49 34 2 0 0 0 0.17468 3 14705 14705;14743;14807 23.148 0 1 155210 + 56175 28810 35308 35326 64578;64579;64580 64578 0.05006923719588485 YINHPIPFI 9 Unmodified _YINHPIPFI_ 0 0 0 REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 557.3074951171875 2 557.30821 1112.60187 0.53052 0.00029566 -0.40276 -0.00022446 0.12776 7.1204E-05 557.3078236671079 64.757 0.50575 68.236 68.038 68.544 3.4792 53 35 2 0 0 0 0.17468 1 14700 14700 23.148 0 1 113300 + 56176 28810 35308 35326 64581 64581 0.05006923719588485 YINHPIPFI 9 Unmodified _YINHPIPFI_ 0 0 0 REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 557.7894287109375 2 557.30821 1112.60187 0.53052 0.00029566 -0.40276 -0.00022446 0.12776 7.1204E-05 557.3078236671079 64.757 0.50575 68.236 68.038 68.544 3.4792 53 35 2 0 0 0 0.12321 1 14667 14667 3.9444 0 1 113300 + 56177 28810 35308 35326 64582 64582 0.05006923719588485 YINHPIPFI 9 Unmodified _YINHPIPFI_ 0 0 0 REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.3075561523438 2 557.30821 1112.60187 0.43582 0.00024288 -0.64524 -0.0003596 -0.20942 -0.00011671 557.3075968745327 64.578 0.47124 68.086 68.019 68.49 3.5083 55 39 2 0 0 0 0.17468 4 14534 14534;14588;14623;14628 23.148 0 1 128530 + 56178 28810 35308 35326 64583;64584;64585;64586 64583 0.05006923719588485 YINHPIPFI 9 Unmodified _YINHPIPFI_ 0 0 0 REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense REV__L1MEi_dup732|chr2:157424709-157425616:+|2.0931961091424465|0.1025414964429638|4.35|151.0|21|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 557.30821 1112.60187 0.57836 0.00032232 -0.47323 -0.00026373 0.10513 5.8591E-05 557.3077560403614 64.937 0.43327 68.391 68.245 68.679 3.4541 0.153 6.5713E-05 NaN 23.148 49 34 2 NaN NaN NaN NaN 0 NaN NaN 0 155210 + 56179 28810 35308 35326 0.05006923719588485 YINITANNLI 10 Unmodified _YINITANNLI_ 0 0 0 REV__L1MB7_dup15650|chr12:25236787-25237396:+|2.3001487974327754|0.1322550953076719|4.12|151.0|27|1|anti-sense REV__L1MB7_dup15650|chr12:25236787-25237396:+|2.3001487974327754|0.1322550953076719|4.12|151.0|27|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.819091796875 2 574.819138 1147.62372 0.45172 0.00025966 -0.18673 -0.00010733 0.26499 0.00015232 574.8190429917117 68.933 1.297 72.388 71.924 73.221 3.4548 287 100 4 0 0 0 0.55724 1 15814 15814 4.5289 0 1 3738300 + 56180 26151 35309 35327 64587 64587 0.05581683677496585 YINLPRIG 8 Unmodified _YINLPRIG_ 0 0 0 L1MB4_dup451|chr1:207780030-207780752:-|1.5858564970975697|0.1766614776688795|3.17|151.0|21|2|sense L1MB4_dup451|chr1:207780030-207780752:-|1.5858564970975697|0.1766614776688795|3.17|151.0|21|2|sense L1MB4_dup451|chr1:207780030-207780752:-|1.5858564970975697|0.1766614776688795|3.17|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 473.2794494628906 2 473.279452 944.544351 0.095537 4.5216E-05 -0.054841 -2.5955E-05 0.040696 1.9261E-05 473.27939821648545 50.378 0.60265 53.903 53.624 54.227 3.5246 62 40 2 0 0 0 0.82752 1 10318 10318 13.508 0 1 100080 56181 10523 35310 35328 64588 64588 0.06986081514025955 YINLTYLAI 9 Unmodified _YINLTYLAI_ 0 0 0 REV__L1MA9_dup3343|chr4:15648291-15649023:+|1.2690379486762984|0.0346161227040876|5.2|151.0|26|3|sense REV__L1MA9_dup3343|chr4:15648291-15649023:+|1.2690379486762984|0.0346161227040876|5.2|151.0|26|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 542.8093872070312 2 542.307875 1082.6012 0.35636 0.00019326 -0.15893 -8.6187E-05 0.19743 0.00010707 542.3077562097504 80.766 0.27472 80.766 80.685 80.96 0 43 27 2 0 0 0 0.36392 1 19077 19077 10.074 0 1 238240 + 56182 25629 35311 35329 64589 64589 0.06320084279877847 YINNKAKII 9 Unmodified _YINNKAKII_ 0 0 0 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 MULTI-SECPEP UPN46_class_I_Rep_3 1 538.8267211914062 2 538.826766 1075.63898 0.27089 0.00014596 -0.4703 -0.00025341 -0.19942 -0.00010745 538.8264889597101 56.745 0.75516 56.745 56.448 57.203 0 115 86 2 0 0 0 0.086155 1 12420 12420 23.148 1.6114 1 519500 56183 2944 35312 35330 64590 64590 0.1041859526535518 YINNKAKII 9 Unmodified _YINNKAKII_ 0 0 0 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 MULTI-MSMS UPN48_class_I_Rep_1 5 538.8271484375 2 538.826766 1075.63898 0.36886 0.00019875 -0.15859 -8.5453E-05 0.21027 0.0001133 538.8265797703389 50.384 0.95398 53.908 53.499 54.453 3.5246 145 61 3 0 0 0 0.25207 3 10350 10350;10372;10414 16.942 4.3511 1 433470 56184 2944 35312 35330 64591;64592;64593 64591 0.1041859526535518 YINNKAKII 9 Unmodified _YINNKAKII_ 0 0 0 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 MULTI-MSMS UPN48_class_I_Rep_2 6 538.8268432617188 2 538.826766 1075.63898 0.43312 0.00023338 -0.33962 -0.00018299 0.093504 5.0382E-05 538.8265147777089 50.251 1.05 53.946 53.463 54.513 3.6946 153 66 3 0 0 0 0.32219 2 10328 10328;10371 12.532 1.7076 1 374750 56185 2944 35312 35330 64594;64595 64594 0.1041859526535518 YINNKAKII 9 Unmodified _YINNKAKII_ 0 0 0 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 ENSG00000136011|ENST00000388887|STAB2 MULTI-MSMS UPN48_class_I_Rep_3 7 538.8269653320312 2 538.826766 1075.63898 0.45439 0.00024484 -0.22567 -0.0001216 0.22873 0.00012324 538.8265546156806 50.3 0.89075 53.921 53.533 54.423 3.621 120 57 3 0 0 0 0.33654 1 10294 10294 11.64 4.3511 1 510590 56186 2944 35312 35330 64596 64596 0.1041859526535518 YINRLLLY 8 Unmodified _YINRLLLY_ 0 0 0 REV__L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|154|2|anti-sense REV__L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|154|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 534.7772827148438 2 534.316035 1066.61752 -0.045241 -2.4173E-05 0.028304 1.5123E-05 -0.016937 -9.0495E-06 534.3159627037105 38.88 1.6876 42.545 42.078 43.766 3.6652 263 117 3 0 0 0 0.72333 1 7898 7898 15.768 0 1 821210 + 56187 24863 35313 35331 64597 64597 0.0868721023668968 YINRLLLY 8 Unmodified _YINRLLLY_ 0 0 0 REV__L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|154|2|anti-sense REV__L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|154|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 534.7774047851562 2 534.316035 1066.61752 -0.051701 -2.7625E-05 0.017366 9.2789E-06 -0.034335 -1.8346E-05 534.3161212525314 40.588 0.1949 43.96 43.799 43.994 3.3712 17 12 2 0 0 0 0.72333 1 8064 8064 15.768 0 1 74483 + 56188 24863 35313 35331 64598 64598 0.0868721023668968 YIPDSFSII 9 Unmodified _YIPDSFSII_ 0 0 0 L1ME3F_dup953|chr3:111625442-111626021:+|3.1720659328793435|0.0375640669056588|6.4|150.0|34|2|anti-sense L1ME3F_dup953|chr3:111625442-111626021:+|3.1720659328793435|0.0375640669056588|6.4|150.0|34|2|anti-sense L1ME3F_dup953|chr3:111625442-111626021:+|3.1720659328793435|0.0375640669056588|6.4|150.0|34|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.7763671875 2 527.776408 1053.53826 0.40162 0.00021197 0.5874 0.00031001 0.98902 0.00052198 527.7767791320134 76.839 0.65094 80.451 80.089 80.74 3.6116 104 65 2 0 0 0 0.26948 1 18074 18074 15.847 0 1 156270 56189 12823 35314 35332 64599 64599 0.01363518491848481 YIPLCYQWF 9 Unmodified _YIPLCYQWF_ 0 0 0 REV__L1MB7_dup21963|chr20:44988669-44990406:-|1.5538995887128544|0.0584197021466269|4.73|151.0|85|1|anti-sense REV__L1MB7_dup21963|chr20:44988669-44990406:-|1.5538995887128544|0.0584197021466269|4.73|151.0|85|1|anti-sense MSMS UPN48_class_I_Rep_2 6 616.72216796875 2 616.794078 1231.5736 NaN NaN NaN NaN NaN NaN NaN 21.965 1 25.611 25.111 26.111 3.6459 0 0 0 0.40038 1 2165 2165 0.6015 0 1 + 56190 26223 35315 35333 64600 64600 -0.032921422520075794 YIPLVFSYQ 9 Unmodified _YIPLVFSYQ_ 0 0 0 L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|357|2|anti-sense L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|357|2|anti-sense L1PB1_dup2247|chr3:87913851-87920410:+|15.88930470391368|0.0474284196097838|8.39|149.0|357|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 565.2877807617188 2 565.30005 1128.58555 0.52762 0.00029826 -0.092661 -5.2381E-05 0.43496 0.00024588 565.3000312528682 64.152 0.64494 67.627 67.295 67.94 3.4743 78 47 2 0 0 0 0.28552 1 14546 14546 14.838 0 1 220340 56191 15069 35316 35334 64601 64601 0.026397977628448643 YIPLVYVPF 9 Unmodified _YIPLVYVPF_ 0 0 0 L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|173|1|anti-sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|173|1|anti-sense L1MA2_dup926|chr2:175064826-175069850:+|1.5579258709709416|0.1457363528879293|3.42|151.0|173|1|anti-sense MSMS UPN48_class_I_Rep_1 5 555.81298828125 2 555.815336 1109.61612 NaN NaN NaN NaN NaN NaN NaN 65.111 1 68.566 68.066 69.066 3.4541 0 0 0 0.3264 1 14789 14789 9.3474 0.60203 1 56192 9459 35317 35335 64602 64602 0.06569576147876433 YIPQLGKYA 9 Unmodified _YIPQLGKYA_ 0 0 0 nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENSG00000173064|ENST00000682272|HECTD4;ENST00000547519.1_1_12:112666581-112668655:-|nuORF nc|ENSG00000173064|Q9Y4D8-2|HECTD4 nc|ENSG00000173064|Q9Y4D8-2|HECTD4 MSMS UPN46_class_I_Rep_3 1 526.8219604492188 2 526.792392 1051.57023 NaN NaN NaN NaN NaN NaN NaN 41.468 1 41.468 40.968 41.968 0 0 0 0 0.38478 1 8133 8133 4.3292 0.38484 1 56193 4607 35318 35336 64603 64603 0.046509309656585174 YIPSTRQL 8 Unmodified _YIPSTRQL_ 0 0 0 REV__ENST00000509479.6_1_4:141075091-141075256:-|nuORF REV__ENST00000509479.6_1_4:141075091-141075256:-|nuORF MSMS UPN48_class_I_Rep_1 5 489.2747802734375 2 489.274367 976.53418 NaN NaN NaN NaN NaN NaN NaN 48.039 1 51.56 51.06 52.06 3.5219 0 0 0 0.40292 1 9558 9558 6.7232 0 1 + 56194 22731 35319 35337 64604 64604 0.04497473788796924 YIPVFIYNS 9 Unmodified _YIPVFIYNS_ 0 0 0 REV__L1MA3_dup8537|chr20:1347835-1350325:-|3.186776957117721|0.2834041440515368|3.49|151.0|112|2|anti-sense REV__L1MA3_dup8537|chr20:1347835-1350325:-|3.186776957117721|0.2834041440515368|3.49|151.0|112|2|anti-sense MSMS UPN48_class_I_Rep_2 6 558.2942504882812 2 558.292225 1114.5699 NaN NaN NaN NaN NaN NaN NaN 89.035 1 92.773 92.273 93.273 3.7379 0 0 0 0.39326 1 21199 21199 2.3027 0.4585 1 + 56195 25128 35320 35338 64605 64605 0.017195112458011863 YIPVSSIHIY 10 Unmodified _YIPVSSIHIY_ 0 0 0 REV__L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|30|3|sense REV__L1M5_dup34046|chr10:26461224-26462023:-|2.5983366147704605|0.0034290802177431|9.57|151.0|30|3|sense MSMS UPN47_class_I_Rep_3 4 596.3219604492188 2 596.324057 1190.63356 NaN NaN NaN NaN NaN NaN NaN 51.527 1 54.744 54.244 55.244 3.2163 0 0 0 0.53105 1 11475 11475 20.454 0 1 + 56196 24660 35321 35339 64606 64606 0.04586871682909077 YIPYLEHNP 9 Unmodified _YIPYLEHNP_ 0 0 0 REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|24|1|sense REV__L1PB4_dup4916|chr10:31475230-31479037:+|2.6105194283363358|0.2219639760325533|3.56|151.0|24|1|sense MSMS UPN47_class_I_Rep_1 2 573.3304443359375 2 573.284931 1144.55531 NaN NaN NaN NaN NaN NaN NaN 89.275 1 92.949 92.449 93.449 3.6738 0 0 0 0.39428 1 22320 22320 2.0598 0 1 + 56197 30598 35322 35340 64607 64607 -0.011185609023414145 YIPYNPQQFP 10 Unmodified _YIPYNPQQFP_ 0 0 0 nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-6|ATXN2L nc|ENSG00000168488|Q8WWM7-6|ATXN2L MULTI-MSMS UPN48_class_I_Rep_2 6 633.8118896484375 2 633.811313 1265.60807 0.54688 0.00034662 -0.27297 -0.00017301 0.27391 0.00017361 633.8112136851904 62.516 0.5686 65.99 65.718 66.287 3.4738 82 38 3 0 0 0 0.56309 1 14057 14057 1.6526 0 1 176540 56198 4375 35323 35341 64608 64608 -0.014106028395417525 YIPYNPQQFP 10 Unmodified _YIPYNPQQFP_ 0 0 0 nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-6|ATXN2L nc|ENSG00000168488|Q8WWM7-6|ATXN2L MULTI-MSMS UPN48_class_I_Rep_3 7 633.8112182617188 2 633.811313 1265.60807 0.62823 0.00039818 -0.38918 -0.00024667 0.23906 0.00015152 633.81109391158 62.406 0.71712 65.917 65.554 66.271 3.5104 69 55 2 0 0 0 0.56309 1 13949 13949 1.6526 0 1 195730 56199 4375 35323 35341 64609 64609 -0.014106028395417525 YIQFDRKKW 9 Unmodified _YIQFDRKKW_ 0 0 0 L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|22|1|sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|22|1|sense L1MA9_dup15287|chr19:9372870-9375885:-|1.4985169852784637|0.3907978232577541|1.94|151.0|22|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 642.347900390625 2 642.348397 1282.68224 0.49984 0.00032107 -2.5193 -0.0016183 -2.0195 -0.0012972 642.3474269431966 98.376 0.23754 102.15 101.95 102.19 3.7707 51 33 2 0 0 0 0.46434 1 23352 23352 4.3292 0.73274 1 2419200 56200 10120 35324 35342 64610 64610 0.05220785042661191 YIQHRWIKQTY 11 Unmodified _YIQHRWIKQTY_ 0 0 0 L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|32|1|sense L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|32|1|sense L1ME3A_dup3897|chr4:48059820-48063850:+|1.5505769220672694|0.3921355467865559|1.98|151.0|32|1|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 512.6062622070312 3 512.60877 1534.80448 0.27219 0.00013953 -4.418 -0.0022647 -4.1458 -0.0021252 512.6061918860242 40.521 0.088459 44.262 44.19 44.278 3.7413 12 9 2 0 0 0 22.551 1 7306 7306 4.1166 1.8639 1 49062 56201 12667 35325 35343 64611 64611 0.058472020542012615 YIQIFQKTE 9 Unmodified _YIQIFQKTE_ 0 0 0 L1MEc_dup14329|chr13:50102801-50103604:+|1.9298430375949964|0.0895548479618966|4.43|151.0|14|2|sense L1MEc_dup14329|chr13:50102801-50103604:+|1.9298430375949964|0.0895548479618966|4.43|151.0|14|2|sense L1MEc_dup14329|chr13:50102801-50103604:+|1.9298430375949964|0.0895548479618966|4.43|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 585.3135375976562 2 585.313689 1168.61282 0.38566 0.00022573 0.19093 0.00011175 0.57659 0.00033749 585.3134508962495 55.676 0.61293 59.232 58.899 59.512 3.5554 70 41 2 0 0 0 0.37599 1 11867 11867 9.3831 2.0939 1 147850 56202 13025 35326 35344 64612 64612 0.03526281303243195 YIQIFYFF 8 Unmodified _YIQIFYFF_ 0 0 0 L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|96|1|anti-sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|96|1|anti-sense L1MC1_dup3588|chr4:105254713-105257151:-|3.1969758217799886|0.1541199412074815|4.37|151.0|96|1|anti-sense MSMS UPN47_class_I_Rep_1 2 570.7899780273438 2 570.791861 1139.56917 NaN NaN NaN NaN NaN NaN NaN 72.456 1 75.836 75.336 76.336 3.3799 0 0 0 0.40364 1 17731 17731 5.7604 0.52976 1 56203 11138 35327 35345 64613 64613 0.004967165967627807 YIQKLENYV 9 Unmodified _YIQKLENYV_ 0 0 0 REV__L1PA4_dup8807|chr11:31735393-31737478:+|3.130800233391573|0.0481024125154195|6.02|151.0|56|3|sense REV__L1PA4_dup8807|chr11:31735393-31737478:+|3.130800233391573|0.0481024125154195|6.02|151.0|56|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 585.3137817382812 2 585.313689 1168.61282 0.60256 0.00035268 -0.063754 -3.7316E-05 0.5388 0.00031537 585.3133668966399 55.595 0.52253 59.151 58.989 59.512 3.5559 53 33 2 0 0 0 0.35081 1 11889 11889 10.824 0 1 172970 + 56204 29688 35328 35346 64614 64614 0.035262813032204576 YIQPDLFLY 9 Unmodified _YIQPDLFLY_ 0 0 0 L1MC4_dup16726|chr11:72954726-72954930:+|1.000999736570236|0.0049821813093099|7.65|151.0|10|1|anti-sense L1MC4_dup16726|chr11:72954726-72954930:+|1.000999736570236|0.0049821813093099|7.65|151.0|10|1|anti-sense L1MC4_dup16726|chr11:72954726-72954930:+|1.000999736570236|0.0049821813093099|7.65|151.0|10|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.305419921875 2 586.305332 1170.59611 0.4898 0.00028717 0.1058 6.2034E-05 0.59561 0.00034921 586.3053583974272 66.583 0.62973 70.035 69.724 70.354 3.4516 90 41 3 0 0 0 0.28552 1 15238 15238 14.838 0 1 233290 56205 11418 35329 35347 64615 64615 0.01763780417286398 YIQYFIDPI 9 Unmodified _YIQYFIDPI_ 0 0 0 REV__L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|64|2|anti-sense REV__L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|64|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.3057250976562 2 586.305332 1170.59611 0.4898 0.00028717 0.1058 6.2034E-05 0.59561 0.00034921 586.3053583974272 66.583 0.62973 70.035 69.724 70.354 3.4516 90 41 3 0 0 0 0.35081 1 15275 15275 10.824 0 1 233290 + 56206 30572 35330 35348 64616 64616 0.01763780417286398 YIRFILGKN 9 Unmodified _YIRFILGKN_ 0 0 0 REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|38|2|sense REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|38|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 562.3348388671875 2 562.334759 1122.65496 0.28767 0.00016176 0.036475 2.0511E-05 0.32414 0.00018228 562.3345919777572 34.696 0.055386 34.696 34.684 34.74 0 6 4 2 0 0 0 0.50582 1 6232 6232 0 0 1 385570 + 56207 29298 35331 35349 64617 64617 0.09854301502309681 YIRFYFLL 8 Unmodified _YIRFYFLL_ 0 0 0 REV__Tigger1_dup10119|chr14:70916439-70918695:-|4.925584706045415|0.1162489276381283|5.41|151.0|105|1|anti-sense REV__Tigger1_dup10119|chr14:70916439-70918695:-|4.925584706045415|0.1162489276381283|5.41|151.0|105|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 568.3228149414062 2 567.820953 1133.62735 0.48207 0.00027373 -4.0462 -0.0022975 -3.5641 -0.0020238 568.321344949498 70.076 0.41157 73.612 73.342 73.754 3.5359 62 34 3 0 0 0 0.82752 2 16253 16253;16261 5.2307 0 1 154870 + 56208 32321 35332 35350 64618;64619 64618 0.06588398242047333 YIRGDLLL 8 Unmodified _YIRGDLLL_ 0 0 0 REV__L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|161|2|anti-sense REV__L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|161|2|anti-sense MSMS UPN48_class_I_Rep_1 5 481.7872314453125 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 113.26 1 116.89 116.39 117.39 3.6314 0 0 0 0.40746 1 27508 27508 0.69038 0 1 + 56209 25491 35333 35351 64620 64620 0.07734948311247081 YIRGDLLL 8 Unmodified _YIRGDLLL_ 0 0 0 REV__L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|161|2|anti-sense REV__L1MA7_dup1029|chr2:186111343-186114460:-|2.278332900804963|0.0424551060902993|5.75|151.0|161|2|anti-sense MSMS UPN48_class_I_Rep_2 6 481.844482421875 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 114.61 1 118.27 117.77 118.77 3.6616 0 0 0 0.40604 1 27401 27401 2.5775 0 1 + 56210 25491 35333 35351 64621 64621 0.07734948311247081 YIRGYDKKKV 10 Unmodified _YIRGYDKKKV_ 0 0 0 L1MB3_dup10997|chr11:47063308-47064719:-|1.5156078756348137|0.0383048965485266|5.31|149.0|44|3|sense L1MB3_dup10997|chr11:47063308-47064719:-|1.5156078756348137|0.0383048965485266|5.31|149.0|44|3|sense L1MB3_dup10997|chr11:47063308-47064719:-|1.5156078756348137|0.0383048965485266|5.31|149.0|44|3|sense MSMS UPN48_class_I_Rep_2 6 635.3701171875 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 90.112 1 93.859 93.359 94.359 3.7471 0 0 0 0.53105 1 21481 21481 1.4819 0.15237 1 56211 10319 35334 35352 64622 64622 0.10049340731143275 YIRGYLAI 8 Unmodified _YIRGYLAI_ 0 0 0 REV__ENSG00000135312|ENST00000369947|HTR1B REV__ENSG00000135312|ENST00000369947|HTR1B MULTI-SECPEP UPN47_class_I_Rep_2 3 484.8161315917969 2 484.781828 967.549102 0.23339 0.00011314 -0.084451 -4.094E-05 0.14894 7.2202E-05 484.78159558558923 61.868 0.74246 65.127 64.871 65.613 3.2594 82 52 2 0 0 0 0.72333 1 14589 14589 18.135 0 1 181150 + 56212 19131 35335 35353 64623 64623 0.06402965656786819 YIRKHFRLH 9 Unmodified _YIRKHFRLH_ 0 0 0 ENST00000504191.1_1_6:86257184-86259466:-|nuORF ENST00000504191.1_1_6:86257184-86259466:-|nuORF ENST00000504191.1_1_6:86257184-86259466:-|nuORF MSMS UPN47_class_I_Rep_1 2 635.3699340820312 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 95.241 1 99.006 98.506 99.506 3.7648 0 0 0 0.4029 1 23645 23645 0 0 1 56213 7144 35336 35354 64624 64624 0.10183019610599331 YIRNRRNN 8 Unmodified _YIRNRRNN_ 0 0 0 REV__ENST00000374151.7_1_10:50363513-50363810:-|nuORF REV__ENST00000374151.7_1_10:50363513-50363810:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 553.30126953125 2 553.302313 1104.59007 0.043068 2.383E-05 -1.3238 -0.00073246 -1.2807 -0.00070863 553.3014883248366 12.983 0.085457 16.371 16.333 16.419 3.388 13 8 2 0 0 0 0.82752 1 216 216 0.69038 0 1 20983 + 56214 21996 35337 35355 64625 64625 0.041961197489854385 YIRRGWWT 8 Unmodified _YIRRGWWT_ 0 0 0 REV__HAL1_dup18726|chr14:102643433-102643831:+|1.3551005500740303|0.005896713622255|7.84|151.0|14|3|sense REV__HAL1_dup18726|chr14:102643433-102643831:+|1.3551005500740303|0.005896713622255|7.84|151.0|14|3|sense MSMS UPN48_class_I_Rep_3 7 569.2998046875 2 569.30125 1136.58795 NaN NaN NaN NaN NaN NaN NaN 63.821 1 67.329 66.829 67.829 3.5083 0 0 0 0.39819 1 14299 14299 8.5933 0.68312 1 + 56215 23386 35338 35356 64626 64626 0.02511691011181938 YIRTKFYIRKA 11 Unmodified _YIRTKFYIRKA_ 0 0 0 ENST00000313349.3_1_2:64861753-64861930:-|nuORF ENST00000313349.3_1_2:64861753-64861930:-|nuORF ENST00000313349.3_1_2:64861753-64861930:-|nuORF MSMS UPN47_class_I_Rep_2 3 487.29449462890625 3 486.957511 1457.8507 NaN NaN NaN NaN NaN NaN NaN 95.058 1 98.533 98.033 99.033 3.4753 0 0 0 0.38417 1 23410 23410 0.50596 0 1 56216 6115 35339 35357 64627 64627 0.140092669563046 YIRTKNRV 8 Unmodified _YIRTKNRV_ 0 0 0 REV__L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|46|3|sense REV__L1M4_dup4349|chr4:17928428-17930204:+|1.3348464510809412|0.1469103026716329|3.18|151.0|46|3|sense MSMS UPN47_class_I_Rep_2 3 525.31689453125 2 525.314358 1048.61416 NaN NaN NaN NaN NaN NaN NaN 63.792 1 67.048 66.548 67.548 3.2556 0 0 0 0.40643 1 15154 15154 2.0598 0 1 + 56217 24432 35340 35358 64628 64628 0.09179960182655122 YIRYQCFTD 9 Unmodified _YIRYQCFTD_ 0 0 0 REV__L1P1_dup1433|chr7:105360767-105362324:+|3.4095799104971447|0.0294271186903797|6.86|151.0|103|3|anti-sense REV__L1P1_dup1433|chr7:105360767-105362324:+|3.4095799104971447|0.0294271186903797|6.86|151.0|103|3|anti-sense MSMS UPN48_class_I_Rep_1 5 604.7735595703125 2 604.773874 1207.53319 NaN NaN NaN NaN NaN NaN NaN 18.26 1 21.791 21.291 22.291 3.5313 0 0 0 0.39518 1 1201 1201 1.8442 0.36234 1 + 56218 28821 35341 35359 64629 64629 -0.062271086424289024 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 621.3138427734375 2 621.313689 1240.61282 0.453 0.00028146 -0.081918 -5.0897E-05 0.37108 0.00023056 621.3135561261183 60.74 2.0742 64.121 63.699 65.774 3.3815 492 169 4 0 0 0 0.021334 7 14206 14096;14132;14170;14206;14245;14282;14620 62.573 26.446 1 4380800 56219 16004 35342 35360 64630;64631;64632;64633;64634;64635;64636 64633 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 621.3114013671875 2 621.313689 1240.61282 0.42933 0.00026675 -0.58483 -0.00036336 -0.1555 -9.6613E-05 621.3130845384868 62.969 0.37783 66.329 66.178 66.555 3.3595 43 28 2 0 0 0 0.42249 1 14882 14882 6.7232 0 1 67894 56220 16004 35342 35360 64637 64637 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 621.3139038085938 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 62.415 1 65.783 65.283 66.283 3.3681 0 0 0 0.37476 1 14702 14702 6.7232 0 1 56221 16004 35342 35360 64638 64638 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 621.313232421875 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 62.587 1 65.947 65.447 66.447 3.3595 0 0 0 0.37476 1 14755 14755 6.7232 0 1 56222 16004 35342 35360 64639 64639 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MSMS UPN47_class_I_Rep_1 2 621.3128051757812 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 62.723 1 66.082 65.582 66.582 3.3595 0 0 0 0.37476 1 14797 14797 6.7232 0 1 56223 16004 35342 35360 64640 64640 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 621.3138427734375 2 621.313689 1240.61282 0.47043 0.00029229 -0.1193 -7.4123E-05 0.35113 0.00021816 621.3135156800772 60.972 2.3501 64.237 63.8 66.15 3.2654 528 174 5 0 0 0 0.021334 7 14321 14212;14250;14285;14321;14362;14400;14532 62.573 24.576 1 4187000 56224 16004 35342 35360 64641;64642;64643;64644;64645;64646;64647 64644 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 621.8156127929688 2 621.313689 1240.61282 0.41852 0.00026003 -0.59573 -0.00037014 -0.17721 -0.0001101 621.3131248739642 63.352 0.41756 66.608 66.464 66.881 3.2558 40 31 2 0 0 0 0.42249 1 14992 14992 6.7232 0 1 69973 56225 16004 35342 35360 64648 64648 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MSMS UPN47_class_I_Rep_2 3 621.3128662109375 2 621.313689 1240.61282 NaN NaN NaN NaN NaN NaN NaN 62.591 1 65.847 65.347 66.347 3.2558 0 0 0 0.37476 1 14791 14791 6.7232 0 1 56226 16004 35342 35360 64649 64649 0.0021428130326057726 YIRYSTLYY 9 Unmodified _YIRYSTLYY_ 0 0 0 MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MER47A_dup2377|chr20:32390013-32390335:-|1.5254875924466669|0.0072871935872693|7.71|151.0|6|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 621.3139038085938 2 621.313689 1240.61282 0.39001 0.00024232 -0.061047 -3.793E-05 0.32896 0.00020439 621.3135651502976 61.103 2.5251 64.268 63.769 66.294 3.1651 496 188 4 0 0 0 0.021334 8 14351 14274;14313;14351;14392;14428;14693;14774;14894 62.573 28.47 1 4879800 56227 16004 35342 35360 64650;64651;64652;64653;64654;64655;64656;64657 64652 0.0021428130326057726 YISAIHFYT 9 Unmodified _YISAIHFYT_ 0 0 0 ENST00000517439.1_1_8:74893396-74893462:+|nuORF ENST00000517439.1_1_8:74893396-74893462:+|nuORF ENST00000517439.1_1_8:74893396-74893462:+|nuORF MSMS UPN48_class_I_Rep_3 7 557.7819213867188 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 66.447 1 69.954 69.454 70.454 3.5077 0 0 0 0.39518 1 15092 15092 1.8442 0.19162 1 56228 7209 35343 35361 64658 64658 -0.002736594140287707 YISDNVNKY 9 Unmodified _YISDNVNKY_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MSMS UPN46_class_I_Rep_3 1 558.271728515625 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 36.862 1 36.862 36.362 37.362 0 0 0 0 0.11827 1 6879 6879 21.537 4.5947 1 56229 1526 35344 35362 64659 64659 -0.023194551446067635 YISDNVNKY 9 Unmodified _YISDNVNKY_ 0 0 0 nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A nc|ENSG00000100644|Q16665-2|HIF1A MSMS UPN46_class_I_Rep_3 1 558.2705688476562 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 37.013 1 37.013 36.513 37.513 0 0 0 0 0.22485 1 6918 6918 14.838 0.25658 1 56230 1526 35344 35362 64660 64660 -0.023194551446067635 YISDTLGQVY 10 Unmodified _YISDTLGQVY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS UPN47_class_I_Rep_1 2 579.7874755859375 2 579.787504 1157.56045 0.0089667 5.1988E-06 -0.15238 -8.8347E-05 -0.14341 -8.3149E-05 579.7874444400771 42.18 0.42851 45.859 45.681 46.11 3.6792 38 29 2 0 0 0 0.41718 1 8549 8549 18.146 1.0335 1 75931 56231 5560 35345 35363 64661 64661 -0.012023018303580102 YISDTWSRV 9 Unmodified _YISDTWSRV_ 0 0 0 MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.7799682617188 2 563.780013 1125.54547 0.33441 0.00018853 -0.44986 -0.00025362 -0.11545 -6.5091E-05 563.7795166216101 54.54 0.98517 58.041 57.673 58.658 3.5014 89 57 2 0 0 0 0.30034 2 12276 12276;12398 13.906 5.1606 1 159980 56232 16404 35346 35364 64662;64663 64662 -0.012277489077405335 YISDTWSRV 9 Unmodified _YISDTWSRV_ 0 0 0 MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.780029296875 2 563.780013 1125.54547 0.51757 0.00029179 -0.46899 -0.00026441 0.048578 2.7388E-05 563.7796009788046 54.867 0.88346 58.186 57.83 58.713 3.3187 84 48 2 0 0 0 0.43982 2 12372 12358;12372 5.7319 0 1 160250 56233 16404 35346 35364 64664;64665 64665 -0.012277489077405335 YISDTWSRV 9 Unmodified _YISDTWSRV_ 0 0 0 MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MLT1G_dup1996|chr12:76374269-76374874:+|1.4631804507036923|0.398363840131331|1.88|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.7802124023438 2 563.780013 1125.54547 0.4337 0.00024451 -0.24577 -0.00013856 0.18793 0.00010595 563.7796327241941 55.001 0.95593 58.179 57.797 58.753 3.1779 111 55 3 0 0 0 0.37599 1 12477 12477 9.3831 0.63772 1 129930 56234 16404 35346 35364 64666 64666 -0.012277489077405335 YISEDILFY 9 Unmodified _YISEDILFY_ 0 0 0 MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|195|2|anti-sense MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|195|2|anti-sense MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|195|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 581.797119140625 2 581.786973 1161.55939 0.54229 0.0003155 -3.5745 -0.0020796 -3.0322 -0.0017641 582.2863493106606 61.124 0.10733 64.602 64.581 64.688 3.4785 9 8 2 0 0 0 0.3898 1 13550 13550 8.5933 0.98433 1 51190 56235 15953 35347 35365 64667 64667 -0.014925161992778158 YISIFHLCY 9 Unmodified _YISIFHLCY_ 0 0 0 L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|194|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|194|3|anti-sense L1M4a2_dup740|chr6:107364810-107367501:+|1.2506883811183396|0.0423105964344111|4.89|151.0|194|3|anti-sense MSMS UPN47_class_I_Rep_3 4 579.7863159179688 2 579.786253 1157.55795 NaN NaN NaN NaN NaN NaN NaN 42.682 1 45.922 45.422 46.422 3.2394 0 0 0 0.19137 1 8782 8782 16.942 0.79319 1 56236 8985 35348 35366 64668 64668 -0.014524287690392157 YISIFNNKY 9 Unmodified _YISIFNNKY_ 0 0 0 REV__L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|12|1|sense REV__L1ME1_dup12485|chr6:147367658-147370238:+|2.2009988289900155|0.3874979415590936|2.51|151.0|12|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 581.2996826171875 2 581.300581 1160.58661 0.4514 0.0002624 -0.025188 -1.4642E-05 0.42621 0.00024775 581.300484436969 70.662 0.99959 74.122 73.66 74.659 3.4598 279 100 4 0 0 0 0.35081 1 16607 16607 10.824 0.75 1 1412200 + 56237 27586 35349 35367 64669 64669 0.012740121317619924 YISLSIRYI 9 Unmodified _YISLSIRYI_ 0 0 0 REV__L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|47|3|anti-sense REV__L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|47|3|anti-sense MSMS UPN47_class_I_Rep_1 2 564.3253784179688 2 564.326599 1126.63865 NaN NaN NaN NaN NaN NaN NaN 71.711 1 75.086 74.586 75.586 3.3751 0 0 0 0.38478 1 17501 17501 4.3292 0 1 + 56238 25941 35350 35368 64670 64670 0.08039175545513899 YISLSIRYI 9 Unmodified _YISLSIRYI_ 0 0 0 REV__L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|47|3|anti-sense REV__L1MB4_dup1550|chr3:49767768-49768487:+|1.8362548913761332|0.0088069781911438|7.7|151.0|47|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.3253784179688 2 564.326599 1126.63865 0.44915 0.00025347 -0.18635 -0.00010516 0.2628 0.0001483 564.3263736448553 71.647 0.5399 74.866 74.652 75.192 3.2188 58 40 2 0 0 0 0.40174 1 17658 17658 7.9102 0 1 112820 + 56239 25941 35350 35368 64671 64671 0.08039175545513899 YISLVYWAF 9 Unmodified _YISLVYWAF_ 0 0 0 REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|84|3|anti-sense REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_2 6 581.301025390625 2 581.302593 1160.59063 NaN NaN NaN NaN NaN NaN NaN 70.845 1 74.381 73.881 74.881 3.5359 0 0 0 0.099968 1 16499 16499 24.674 2.9272 1 + 56240 24731 35351 35369 64672 64672 0.016761016254577044 YISLVYWAF 9 Unmodified _YISLVYWAF_ 0 0 0 REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|84|3|anti-sense REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_2 6 581.299072265625 2 581.302593 1160.59063 NaN NaN NaN NaN NaN NaN NaN 70.856 1 74.392 73.892 74.892 3.5359 0 0 0 0.26661 1 16502 16502 12.532 1.7076 1 + 56241 24731 35351 35369 64673 64673 0.016761016254577044 YISRKLNE 8 Unmodified _YISRKLNE_ 0 0 0 L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|57|3|sense L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|57|3|sense L1M4b_dup4076|chr18:79896266-79897935:-|2.545705618100239|0.3221096093412983|2.98|151.0|57|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.78497314453125 2 511.785099 1021.55564 -0.275 -0.00014074 0.21376 0.0001094 -0.061242 -3.1343E-05 511.78515823165054 28.264 0.86183 31.763 31.496 32.358 3.4986 89 71 2 0 0 0 0.82752 1 4533 4533 2.0598 0 1 99118 56242 9013 35352 35370 64674 64674 0.04572858817527958 YISSDRKIL 9 Unmodified _YISSDRKIL_ 0 0 0 REV__ERVL-E-int_dup2355|chr4:102271200-102271959:+|1.1469809858633802|0.0927981684252794|3.63|151.0|43|2|anti-sense REV__ERVL-E-int_dup2355|chr4:102271200-102271959:+|1.1469809858633802|0.0927981684252794|3.63|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 547.7385864257812 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 22.423 1 26.097 25.597 26.597 3.6749 0 0 0 0.39428 1 2603 2603 2.0598 0 1 + 56243 23274 35353 35371 64675 64675 0.0700970102309384 YISSQKLKR 9 Unmodified _YISSQKLKR_ 0 0 0 REV__L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|43|2|sense REV__L1ME1_dup28307|chr18:26063531-26065803:+|1.3518761325313164|0.0489228886591815|4.79|151.0|43|2|sense MSMS UPN48_class_I_Rep_1 5 561.8353271484375 2 561.835123 1121.65569 NaN NaN NaN NaN NaN NaN NaN 73.917 1 77.399 76.899 77.899 3.4812 0 0 0 0.38299 1 17445 17445 4.756 0 1 + 56244 27730 35354 35372 64676 64676 0.09973096151315985 YISTLFHEK 9 Unmodified _YISTLFHEK_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|99|3|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|99|3|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|99|3|sense MSMS UPN48_class_I_Rep_2 6 569.3002319335938 2 569.300581 1136.58661 NaN NaN NaN NaN NaN NaN NaN 63.957 1 67.431 66.931 67.931 3.4743 0 0 0 0.32573 1 14419 14419 9.3831 0.78985 1 56245 10010 35355 35373 64677 64677 0.02378012131748619 YISVHIHLP 9 Unmodified _YISVHIHLP_ 0 0 0 REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|18|1|anti-sense REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 539.8062744140625 2 539.805834 1077.59712 0.4857 0.00026218 -0.27442 -0.00014813 0.21128 0.00011405 539.8057066418473 64.639 1.1906 68.093 67.674 68.865 3.4541 282 93 5 0 0 0 0.32219 2 14755 14755;14791 12.532 1.7076 1 1111800 + 56246 25713 35356 35374 64678;64679 64678 0.06142039576843672 YISVHIHLP 9 Unmodified _YISVHIHLP_ 0 0 0 REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|18|1|anti-sense REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 539.8056030273438 2 539.805834 1077.59712 0.50817 0.00027431 -0.46812 -0.00025269 0.04005 2.1619E-05 539.8056834711048 64.416 1.0288 67.891 67.523 68.552 3.4743 255 76 5 0 0 0 0.32219 1 14730 14730 12.532 1.7076 1 1007000 + 56247 25713 35356 35374 64680 64680 0.06142039576843672 YISVHIHLP 9 Unmodified _YISVHIHLP_ 0 0 0 REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|18|1|anti-sense REV__L1MB2_dup2552|chr5:131322639-131323016:-|1.460657299958288|0.0035240564057962|8.7|151.0|18|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 539.8058471679688 2 539.805834 1077.59712 0.57606 0.00031096 -0.49011 -0.00026456 0.08595 4.6396E-05 539.805623260295 64.383 1.0279 67.891 67.419 68.447 3.5083 277 89 5 0 0 0 0.32219 1 14604 14604 12.532 1.7076 1 1108200 + 56248 25713 35356 35374 64681 64681 0.06142039576843672 YITIRDKVKQP 11 Unmodified _YITIRDKVKQP_ 0 0 0 REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|69|2|sense REV__L1MB3_dup17250|chr22:45828209-45831380:+|8.724304932308964|0.0895967507308157|6.61|151.0|69|2|sense MSMS UPN46_class_I_Rep_3 1 454.3203125 3 454.269755 1359.78744 NaN NaN NaN NaN NaN NaN NaN 118.01 1 118.01 117.51 118.51 0 0 0 0 0.38417 1 29274 29274 0.50596 0 1 + 56249 25850 35357 35375 64682 64682 0.12193281448412563 YITIVRIFR 9 Unmodified _YITIVRIFR_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|86|1|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|86|1|anti-sense MSMS UPN47_class_I_Rep_3 4 590.865234375 2 590.863683 1179.71281 NaN NaN NaN NaN NaN NaN NaN 82.597 1 85.934 85.434 86.434 3.337 0 0 0 0.4007 1 20703 20703 0.52476 0 1 + 56250 32420 35358 35376 64683 64683 0.13014563427714165 YITLVYLHI 9 Unmodified _YITLVYLHI_ 0 0 0 L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|281|3|anti-sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|281|3|anti-sense L1MA2_dup1808|chr4:101877902-101882225:+|1.0547234984002538|0.0210897363678565|5.64|151.0|281|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.8323974609375 2 567.831517 1133.64848 NaN NaN NaN NaN NaN NaN NaN 85.788 1 89.394 88.894 89.894 3.6059 0 0 0 0.39428 1 20531 20531 2.0598 0 1 56251 9350 35359 35377 64684 64684 0.08700363550906332 YITPRRQR 8 Unmodified _YITPRRQR_ 0 0 0 REV__ENST00000450656.5_1_4:57844887-57844959:+|nuORF REV__ENST00000450656.5_1_4:57844887-57844959:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 545.317138671875 2 545.317432 1088.62031 0.50273 0.00027415 -0.88815 -0.00048432 -0.38542 -0.00021018 545.3168456454797 83.33 0.14393 86.741 86.692 86.835 3.4116 28 17 2 0 0 0 0.82752 1 20759 20759 0.69038 0 1 100670 + 56252 22384 35360 35378 64685 64685 0.07954478414171717 YITRFDLEL 9 Unmodified _YITRFDLEL_ 0 0 0 ENST00000485925.5_1_9:136279761-136305516:+|nuORF;nc|ENSG00000160323|Q76LX8-3|ADAMTS13;ENSG00000160323|ENST00000355699|ADAMTS13;nc|ENSG00000160323|Q76LX8|ADAMTS13 ENST00000485925.5_1_9:136279761-136305516:+|nuORF ENST00000485925.5_1_9:136279761-136305516:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 585.31396484375 2 585.313689 1168.61282 0.47625 0.00027876 0.094366 5.5234E-05 0.57062 0.00033399 585.313457600327 55.731 0.5724 59.239 58.982 59.554 3.5082 63 39 2 0 0 0 0.41259 1 11938 11938 7.2892 0 1 166190 56253 3868 35361 35379 64686 64686 0.03526281303243195 YITTCGPKPIN 11 Unmodified _YITTCGPKPIN_ 0 0 0 REV__L1MC1_dup1804|chr2:171771234-171772100:+|2.9241148629715017|0.3389478997606353|3.11|151.0|44|2|anti-sense REV__L1MC1_dup1804|chr2:171771234-171772100:+|2.9241148629715017|0.3389478997606353|3.11|151.0|44|2|anti-sense MSMS UPN47_class_I_Rep_3 4 603.81298828125 2 603.812999 1205.61144 NaN NaN NaN NaN NaN NaN NaN 57.991 1 61.159 60.659 61.659 3.1681 0 0 0 0.38417 1 13441 13441 4.5289 0.19963 1 + 56254 26532 35362 35380 64687 64687 0.016863239428403176 YIVADHTLF 9 Unmodified _YIVADHTLF_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MSMS UPN48_class_I_Rep_1 5 539.7830810546875 2 539.782025 1077.5495 0.42717 0.00023058 -0.0020135 -1.0868E-06 0.42516 0.00022949 539.7820495517399 55.122 0.56391 58.63 58.31 58.874 3.5082 60 35 2 0 0 0 0.23311 1 11716 11716 18.135 0 1 91832 56255 3541 35363 35381 64688 64688 0.013823405859739069 YIVADHTLF 9 Unmodified _YIVADHTLF_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MSMS UPN48_class_I_Rep_2 6 539.7825317382812 2 539.782025 1077.5495 0.59173 0.00031941 -0.48564 -0.00026214 0.1061 5.727E-05 539.7817807263552 55.008 0.48038 58.564 58.396 58.876 3.5559 44 26 2 0 0 0 0.23311 2 11711 11711;11732 18.135 0 1 135950 56256 3541 35363 35381 64689;64690 64689 0.013823405859739069 YIVADHTLF 9 Unmodified _YIVADHTLF_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MSMS UPN48_class_I_Rep_3 7 539.7981567382812 2 539.782025 1077.5495 0.42388 0.0002288 -0.13555 -7.3165E-05 0.28834 0.00015564 539.7821452739107 54.998 0.47032 58.567 58.367 58.837 3.5694 44 26 2 0 0 0 0.17468 2 11609 11609;11616 23.148 5.0134 1 147160 56257 3541 35363 35381 64691;64692 64691 0.013823405859739069 YIVADHTLF 9 Unmodified _YIVADHTLF_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 539.782025 1077.5495 0.42717 0.00023058 -0.0020135 -1.0868E-06 0.42516 0.00022949 539.7820495517399 55.122 0.56391 58.63 58.31 58.874 3.5082 0.043251 0.00013104 NaN 23.148 60 35 2 NaN NaN NaN NaN 0 NaN NaN 0 91832 56258 3541 35363 35381 0.013823405859739069 YIVCKYCR 8 Unmodified _YIVCKYCR_ 0 0 0 L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|76|3|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|76|3|anti-sense L1PB4_dup1279|chr3:142319955-142321105:-|4.27088731165897|0.1821549800580013|4.55|151.0|76|3|anti-sense MSMS UPN48_class_I_Rep_1 5 524.0123291015625 2 524.259348 1046.50414 NaN NaN NaN NaN NaN NaN NaN 75.266 1 78.766 78.266 79.266 3.4996 0 0 0 0.40604 1 17822 17822 2.5775 0.27475 1 56259 15290 35364 35382 64693 64693 -0.017249244723871016 YIVEWAVL 8 Unmodified _YIVEWAVL_ 0 0 0 L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|28|2|sense L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|28|2|sense L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|28|2|sense MSMS UPN48_class_I_Rep_2 6 496.7745361328125 2 496.776211 991.537869 NaN NaN NaN NaN NaN NaN NaN 54.029 1 57.611 57.111 58.111 3.5817 0 0 0 0.39624 1 11380 11380 9.3474 0 1 56260 12944 35365 35383 64694 64694 0.04176143562665402 YIVEWAVL 8 Unmodified _YIVEWAVL_ 0 0 0 L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|28|2|sense L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|28|2|sense L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|28|2|sense MSMS UPN48_class_I_Rep_3 7 496.7747497558594 2 496.776211 991.537869 NaN NaN NaN NaN NaN NaN NaN 53.991 1 57.575 57.075 58.075 3.5836 0 0 0 0.40404 1 11307 11307 5.2307 1.2863 1 56261 12944 35365 35383 64695 64695 0.04176143562665402 YIVGHYLDV 9 Unmodified _YIVGHYLDV_ 0 0 0 REV__ENSG00000247746|ENST00000500968|USP51 REV__ENSG00000247746|ENST00000500968|USP51 MULTI-MSMS UPN48_class_I_Rep_2 6 539.7965698242188 2 539.782025 1077.5495 0.59173 0.00031941 -0.48564 -0.00026214 0.1061 5.727E-05 539.7817807263552 55.008 0.48038 58.564 58.396 58.876 3.5559 44 26 2 0 0 0 0.23311 1 11672 11672 18.135 0 1 135950 + 56262 21345 35366 35384 64696 64696 0.013823405859739069 YIVGHYLDV 9 Unmodified _YIVGHYLDV_ 0 0 0 REV__ENSG00000247746|ENST00000500968|USP51 REV__ENSG00000247746|ENST00000500968|USP51 MULTI-MSMS UPN48_class_I_Rep_3 7 539.7818603515625 2 539.782025 1077.5495 0.42388 0.0002288 -0.13555 -7.3165E-05 0.28834 0.00015564 539.7821452739107 54.998 0.47032 58.567 58.367 58.837 3.5694 44 26 2 0 0 0 0.23311 1 11598 11598 18.135 0 1 147160 + 56263 21345 35366 35384 64697 64697 0.013823405859739069 YIVGSSSPF 9 Unmodified _YIVGSSSPF_ 0 0 0 REV__ENST00000460912.6_1_6:152443573-152489284:-|nuORF REV__ENST00000460912.6_1_6:152443573-152489284:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 478.73992919921875 2 478.739825 955.465098 0.18476 8.8454E-05 0.040411 1.9346E-05 0.22518 0.0001078 478.7397974851511 66.996 0.59949 70.448 70.21 70.809 3.4516 56 38 2 0 0 0 0.26948 1 15354 15354 15.847 1.0089 1 113810 + 56264 18963 35367 35385 64698 64698 -0.01441610230756396 YIVGSSSPF 9 Unmodified _YIVGSSSPF_ 0 0 0 REV__ENST00000460912.6_1_6:152443573-152489284:-|nuORF REV__ENST00000460912.6_1_6:152443573-152489284:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 478.73974609375 2 478.739825 955.465098 0.24817 0.00011881 0.035137 1.6822E-05 0.2833 0.00013563 478.7397966561509 66.896 0.46417 70.392 70.174 70.638 3.4964 38 27 2 0 0 0 0.26948 1 15318 15318 15.847 1.0089 1 96407 + 56265 18963 35367 35385 64699 64699 -0.01441610230756396 YIVGSSSPF 9 Unmodified _YIVGSSSPF_ 0 0 0 REV__ENST00000460912.6_1_6:152443573-152489284:-|nuORF REV__ENST00000460912.6_1_6:152443573-152489284:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 478.73968505859375 2 478.739825 955.465098 0.26621 0.00012745 -0.17143 -8.2069E-05 0.094786 4.5378E-05 478.73974412594254 66.795 0.53735 70.303 70.031 70.569 3.5077 46 32 2 0 0 0 0.18929 1 15195 15195 21.747 1.293 1 116620 + 56266 18963 35367 35385 64700 64700 -0.01441610230756396 YIVLCVYF 8 Unmodified _YIVLCVYF_ 0 0 0 L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|97|1|anti-sense L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|97|1|anti-sense L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|97|1|anti-sense MSMS UPN48_class_I_Rep_1 5 510.26910400390625 2 510.267164 1018.51978 NaN NaN NaN NaN NaN NaN NaN 54.019 1 57.533 57.033 58.033 3.5143 0 0 0 0.29788 1 11396 11396 32.454 0 1 56267 11046 35368 35386 64701 64701 0.011256853163104097 YIVLCVYF 8 Unmodified _YIVLCVYF_ 0 0 0 L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|97|1|anti-sense L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|97|1|anti-sense L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|97|1|anti-sense MSMS UPN48_class_I_Rep_2 6 510.2693176269531 2 510.267164 1018.51978 NaN NaN NaN NaN NaN NaN NaN 53.99 1 57.571 57.071 58.071 3.5817 0 0 0 0.29788 1 11368 11368 32.454 0 1 56268 11046 35368 35386 64702 64702 0.011256853163104097 YIVLEEGVR 9 Unmodified _YIVLEEGVR_ 0 0 0 ENST00000509621.1_3_5:89989878-90055411:+|nuORF;ENSG00000164199|ENST00000405460|ADGRV1 ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENST00000509621.1_3_5:89989878-90055411:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 540.2839965820312 2 539.300581 1076.58661 0.4262 0.00022985 -4.3362 -0.0023385 -3.91 -0.0021086 539.7986831834836 55.099 0.70121 58.608 58.295 58.996 3.5082 82 44 3 0 0 0 0.35081 1 11758 11758 10.824 2.9138 1 317780 56269 4096 35369 35387 64703 64703 0.05138012131783398 YIVLEELEL 9 Unmodified _YIVLEELEL_ 0 0 0 REV__L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|127|3|anti-sense REV__L1MC_dup1629|chr3:142408587-142410487:-|2.408994169466643|0.065321220800252|5.2|151.0|127|3|anti-sense MSMS UPN48_class_I_Rep_1 5 560.8102416992188 2 560.810448 1119.60634 NaN NaN NaN NaN NaN NaN NaN 35.363 1 38.874 38.374 39.374 3.5101 0 0 0 0.4029 1 5774 5774 0 0 1 + 56270 26457 35370 35388 64704 64704 0.05132343351851887 YIVLGPTPE 9 Unmodified _YIVLGPTPE_ 0 0 0 ENST00000496337.1_1_7:141870985-141908039:+|nuORF;ENSG00000257743|ENST00000477922|MGAM2 ENST00000496337.1_1_7:141870985-141908039:+|nuORF ENST00000496337.1_1_7:141870985-141908039:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 494.771240234375 2 494.771126 987.527698 0.27024 0.00013371 0.21232 0.00010505 0.48256 0.00023875 494.77100871170535 77.93 0.56579 81.553 81.262 81.827 3.6222 72 56 2 0 0 0 0.3898 2 18453 18453;18489 8.5933 0 1 124220 56271 5772 35371 35389 64705;64706 64705 0.0334353583742768 YIVMLHVF 8 Unmodified _YIVMLHVF_ 0 0 0 REV__L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|271|3|anti-sense REV__L1M2c_dup230|chrX:65273875-65278210:+|1.0669433745954506|0.02609399936257|5.35|150.0|271|3|anti-sense MSMS UPN48_class_I_Rep_1 5 511.2823486328125 2 511.280606 1020.54666 NaN NaN NaN NaN NaN NaN NaN 50.59 1 54.114 53.614 54.614 3.5246 0 0 0 0.4032 1 10347 10347 6.3541 0 1 + 56272 24281 35372 35390 64707 64707 0.037207939275049284 YIVMLPIP 8 Unmodified _YIVMLPIP_ 0 0 0 L1MB2_dup7367|chr16:75034175-75034638:-|2.2561462172740057|0.0018564744666958|10.25|151.0|21|2|anti-sense L1MB2_dup7367|chr16:75034175-75034638:-|2.2561462172740057|0.0018564744666958|10.25|151.0|21|2|anti-sense L1MB2_dup7367|chr16:75034175-75034638:-|2.2561462172740057|0.0018564744666958|10.25|151.0|21|2|anti-sense MSMS UPN48_class_I_Rep_3 7 473.2796936035156 2 473.277532 944.540511 NaN NaN NaN NaN NaN NaN NaN 50.168 1 53.789 53.289 54.289 3.621 0 0 0 0.39167 1 10149 10149 11.114 0 1 56273 10281 35373 35391 64708 64708 0.06602275695979642 YIVRCEFDP 9 Unmodified _YIVRCEFDP_ 0 0 0 L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|102|1|anti-sense L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|102|1|anti-sense L1PA6_dup4299|chr11:4014006-4017206:-|1.4723716320860356|0.027824836883221|5.73|151.0|102|1|anti-sense MSMS UPN47_class_I_Rep_2 3 571.2723388671875 2 571.270967 1140.52738 NaN NaN NaN NaN NaN NaN NaN 50.662 1 54 53.5 54.5 3.3386 0 0 0 0.32573 1 11155 11155 9.3831 3.1773 1 56274 14628 35374 35392 64709 64709 -0.03726207154068106 YIVRLVGG 8 Unmodified _YIVRLVGG_ 0 0 0 REV__L1MA9_dup16158|chr22:46838071-46839300:+|1.4753659983463607|0.0196768968718176|6.23|151.0|68|2|anti-sense REV__L1MA9_dup16158|chr22:46838071-46839300:+|1.4753659983463607|0.0196768968718176|6.23|151.0|68|2|anti-sense MSMS UPN47_class_I_Rep_2 3 438.7694091796875 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 115.73 1 119.23 118.73 119.73 3.4965 0 0 0 0.40798 1 28229 28229 0 0 1 + 56275 25626 35375 35393 64710 64710 0.0801469648534976 YIVSEWYC 8 Unmodified _YIVSEWYC_ 0 0 0 Tigger1_dup8895|chr12:45875136-45876268:-|2.766236362482845|0.0503116250714725|5.78|151.0|41|1|anti-sense Tigger1_dup8895|chr12:45875136-45876268:-|2.766236362482845|0.0503116250714725|5.78|151.0|41|1|anti-sense Tigger1_dup8895|chr12:45875136-45876268:-|2.766236362482845|0.0503116250714725|5.78|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_2 6 531.7322998046875 2 531.733686 1061.45282 NaN NaN NaN NaN NaN NaN NaN 49.504 1 53.199 52.699 53.699 3.6946 0 0 0 0.40364 1 10009 10009 5.7604 0 1 56276 33204 35376 35394 64711 64711 -0.07544969965465498 YIVSRFIWRWR 11 Unmodified _YIVSRFIWRWR_ 0 0 0 REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8 REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8 MSMS UPN48_class_I_Rep_1 5 527.8085327148438 3 527.964889 1580.87284 NaN NaN NaN NaN NaN NaN NaN 97.915 1 101.52 101.02 102.02 3.6065 0 0 0 0.38417 1 23616 23616 0.094841 0 1 + 56277 19487 35377 35395 64712 64712 0.10563491424727545 YIVSTKEW 8 Unmodified _YIVSTKEW_ 0 0 0 REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|38|2|sense REV__L1PA15-16_dup1043|chr12:62287372-62289215:-|1.0418250385423171|0.0471806465452212|4.46|151.0|38|2|sense MSMS UPN48_class_I_Rep_1 5 513.2677612304688 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 69.116 1 72.57 72.07 73.07 3.4548 0 0 0 0.388 1 16009 16009 12.532 0.89125 1 + 56278 29298 35378 35396 64713 64713 0.011666516946661432 YIVSYYYY 8 Unmodified _YIVSYYYY_ 0 0 0 L1M8_dup1193|chr11:43454871-43456179:+|6.53284871057039|0.1053526326864316|5.95|151.0|97|3|anti-sense L1M8_dup1193|chr11:43454871-43456179:+|6.53284871057039|0.1053526326864316|5.95|151.0|97|3|anti-sense L1M8_dup1193|chr11:43454871-43456179:+|6.53284871057039|0.1053526326864316|5.95|151.0|97|3|anti-sense MSMS UPN48_class_I_Rep_2 6 567.2617797851562 2 567.263133 1132.51171 NaN NaN NaN NaN NaN NaN NaN 66.426 1 69.912 69.412 70.412 3.4866 0 0 0 0.4032 1 15174 15174 6.3541 0 1 56279 9240 35379 35397 64714 64714 -0.049241703994766794 YIVVVQKRY 9 Unmodified _YIVVVQKRY_ 0 0 0 L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|24|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|24|2|sense L1MC4_dup16294|chr11:14874007-14874916:-|1.5759349825259452|0.2606769744247887|2.6|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 584.8170166015625 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 39.005 1 39.005 38.505 39.505 0 0 0 0 0.39518 1 7468 7468 1.8442 0.19162 1 56280 11415 35380 35398 64715 64715 0.10450570673765469 YIVWCWKI 8 Unmodified _YIVWCWKI_ 0 0 0 REV__L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|11|2|sense REV__L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 555.796142578125 2 555.793881 1109.57321 NaN NaN NaN NaN NaN NaN NaN 40.841 1 44.492 43.992 44.992 3.6509 0 0 0 0.35537 1 7312 7312 20.871 6.2895 1 + 56281 27960 35381 35399 64716 64716 0.022804828188100146 YIVWCWKI 8 Unmodified _YIVWCWKI_ 0 0 0 REV__L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|11|2|sense REV__L1ME3_dup6398|chr12:31312069-31313027:-|3.234059321603815|0.0484033584691922|6.06|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 555.7969970703125 2 555.793881 1109.57321 NaN NaN NaN NaN NaN NaN NaN 41.022 1 44.668 44.168 45.168 3.6458 0 0 0 0.38221 1 7362 7362 14.582 2.9414 1 + 56282 27960 35381 35399 64717 64717 0.022804828188100146 YIVWFPWF 8 Unmodified _YIVWFPWF_ 0 0 0 REV__L1MEf_dup10146|chr16:55512267-55513442:+|3.2857413549423944|0.0225331453437411|7.19|151.0|62|2|anti-sense REV__L1MEf_dup10146|chr16:55512267-55513442:+|3.2857413549423944|0.0225331453437411|7.19|151.0|62|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.3109741210938 2 579.294571 1156.57459 0.49128 0.00028459 -0.55774 -0.0003231 -0.066468 -3.8504E-05 579.2937707657865 67.673 0.67076 71.169 70.785 71.456 3.4964 97 59 3 0 0 0 0.82752 2 15550 15550;15600 6.3541 0.59368 1 284150 + 56283 28593 35382 35400 64718;64719 64718 0.0025644017921422346 YIVYVCLFQF 10 Unmodified _YIVYVCLFQF_ 0 0 0 L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|126|3|anti-sense L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|126|3|anti-sense L1PB3_dup1877|chr9:100187820-100189757:-|1.9042172727141904|0.029720621933014|6.0|151.0|126|3|anti-sense MSMS UPN48_class_I_Rep_1 5 647.8303833007812 2 647.83066 1293.64677 NaN NaN NaN NaN NaN NaN NaN 59.98 1 63.46 62.96 63.96 3.4801 0 0 0 0.53105 1 13227 13227 1.6526 0 1 56284 15262 35383 35401 64720 64720 0.01168986470611344 YIWAIRFLI 9 Unmodified _YIWAIRFLI_ 0 0 0 REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 597.8578491210938 2 597.855327 1193.6961 0.57604 0.00034439 1.9964 0.0011935 2.5724 0.0015379 597.8564633806715 100.67 0.065872 100.67 100.62 100.69 0 10 4 3 0 0 0 0.50015 1 24548 24548 0.6015 0 1 170870 + 56285 24698 35384 35402 64721 64721 0.10700062541741318 YIWAIRFLI 9 Unmodified _YIWAIRFLI_ 0 0 0 REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 597.855327 1193.6961 0.4134 0.00024716 2.2445 0.0013419 2.6579 0.001589 597.856606287583 96.936 0.34955 100.55 100.39 100.74 3.6088 -0.015003 7.195E-05 NaN 0.6015 66 42 2 NaN NaN NaN NaN 0 NaN NaN 0 139080 + 56286 24698 35384 35402 0.10700062541741318 YIWAIRFLI 9 Unmodified _YIWAIRFLI_ 0 0 0 REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 597.855327 1193.6961 0.48534 0.00029016 2.1129 0.0012632 2.5983 0.0015534 597.8564790799994 96.674 0.46476 100.45 100.25 100.72 3.7804 -0.10557 -8.5385E-05 NaN 0.6015 90 59 2 NaN NaN NaN NaN 0 NaN NaN 0 247330 + 56287 24698 35384 35402 0.10700062541741318 YIWAIRFLI 9 Unmodified _YIWAIRFLI_ 0 0 0 REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense REV__L1M5_dup53709|chr22:17094962-17095186:+|1.8616751051864333|0.0962300100492406|4.27|151.0|18|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 597.855327 1193.6961 0.53023 0.000317 2.212 0.0013225 2.7423 0.0016395 597.8565351818548 96.659 0.53928 100.57 100.38 100.92 3.9084 0.0074629 3.3129E-05 NaN 0.6015 86 71 2 NaN NaN NaN NaN 0 NaN NaN 0 190430 + 56288 24698 35384 35402 0.10700062541741318 YIWLACYPS 9 Unmodified _YIWLACYPS_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|379|3|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|379|3|anti-sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|379|3|anti-sense MSMS UPN47_class_I_Rep_2 3 558.2649536132812 2 558.265153 1114.51575 NaN NaN NaN NaN NaN NaN NaN 25.757 1 29.251 28.751 29.751 3.4945 0 0 0 0.39518 1 3625 3625 1.8442 0 1 56289 13852 35385 35403 64722 64722 -0.03692404177422759 YIWPFEYT 8 Unmodified _YIWPFEYT_ 0 0 0 REV__L1MEg_dup9285|chr10:48355528-48356267:+|1.7277217094818464|0.1688462416257028|3.36|151.0|31|1|anti-sense REV__L1MEg_dup9285|chr10:48355528-48356267:+|1.7277217094818464|0.1688462416257028|3.36|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 559.7660522460938 2 559.7633 1117.51205 NaN NaN NaN NaN NaN NaN NaN 114.04 1 117.71 117.21 118.21 3.663 0 0 0 0.40604 1 27240 27240 2.5775 0 1 + 56290 28788 35386 35404 64723 64723 -0.04200750679615339 YIWWIIWRDW 10 Unmodified _YIWWIIWRDW_ 0 0 0 REV__L1MA4_dup9106|chr17:60245901-60247177:-|4.365213318635355|0.1254390129021325|5.12|151.0|59|1|anti-sense REV__L1MA4_dup9106|chr17:60245901-60247177:-|4.365213318635355|0.1254390129021325|5.12|151.0|59|1|anti-sense MSMS UPN48_class_I_Rep_1 5 512.9295043945312 3 512.931073 1535.77139 NaN NaN NaN NaN NaN NaN NaN 20.411 1 23.957 23.457 24.457 3.5454 0 0 0 0.53105 1 1715 1715 0.15932 0.064481 1 + 56291 25227 35387 35405 64724 64724 0.024936200021556942 YIWYKAYV 8 Unmodified _YIWYKAYV_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MSMS UPN47_class_I_Rep_1 2 553.2886352539062 2 553.289485 1104.56442 NaN NaN NaN NaN NaN NaN NaN 36.907 1 40.576 40.076 41.076 3.6692 0 0 0 0.40625 1 6943 6943 2.3027 0 1 + 56292 18225 35388 35406 64725 64725 0.016318324539724927 YIWYKAYV 8 Unmodified _YIWYKAYV_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS UPN47_class_I_Rep_2 3 553.289306640625 2 553.289485 1104.56442 0.040123 2.22E-05 -0.70611 -0.00039068 -0.66598 -0.00036848 553.2890355488558 36.718 1.0074 40.117 39.771 40.778 3.3988 102 74 2 0 0 0 0.82752 1 7110 7110 2.3027 0 1 96914 + 56293 18225 35388 35406 64726 64726 0.016318324539724927 YIWYLQLI 8 Unmodified _YIWYLQLI_ 0 0 0 REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.3112182617188 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 64.34 1 67.815 67.315 68.315 3.4743 0 0 0 0.35537 1 14538 14538 20.871 6.0329 1 + 56294 24186 35389 35407 64727 64727 0.06048692005128942 YIWYLQLI 8 Unmodified _YIWYLQLI_ 0 0 0 REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.3108520507812 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 64.464 1 67.938 67.438 68.438 3.4743 0 0 0 0.24633 1 14576 14576 42.968 1.1284 1 + 56295 24186 35389 35407 64728 64728 0.06048692005128942 YIWYLQLI 8 Unmodified _YIWYLQLI_ 0 0 0 REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.3113403320312 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 64.597 1 68.072 67.572 68.572 3.4752 0 0 0 0.35537 1 14617 14617 20.871 6.0329 1 + 56296 24186 35389 35407 64729 64729 0.06048692005128942 YIWYLQLI 8 Unmodified _YIWYLQLI_ 0 0 0 REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense REV__L1M2_dup2217|chr4:83235981-83237168:+|1.0460229162700496|0.2619326043942808|2.0|151.0|74|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.3119506835938 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 64.711 1 68.19 67.69 68.69 3.4792 0 0 0 0.38221 1 14652 14652 14.582 1.5392 1 + 56297 24186 35389 35407 64730 64730 0.06048692005128942 YIYDLFFF 8 Unmodified _YIYDLFFF_ 0 0 0 REV__L1MA9_dup13614|chr14:77360033-77360973:-|1.572173389941545|0.0223244349031167|6.14|151.0|38|1|anti-sense REV__L1MA9_dup13614|chr14:77360033-77360973:-|1.572173389941545|0.0223244349031167|6.14|151.0|38|1|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2588500976562 2 564.276044 1126.53753 NaN NaN NaN NaN NaN NaN NaN 114.55 1 118.06 117.56 118.56 3.5039 0 0 0 0.40604 1 27899 27899 2.5775 0 1 + 56298 25607 35390 35408 64731 64731 -0.02067276157208653 YIYDLMYF 8 Unmodified _YIYDLMYF_ 0 0 0 REV__L1PA3_dup7642|chr10:76219057-76223274:+|1.9037973974433096|0.0347962040179519|5.77|151.0|202|2|anti-sense REV__L1PA3_dup7642|chr10:76219057-76223274:+|1.9037973974433096|0.0347962040179519|5.77|151.0|202|2|anti-sense MSMS UPN47_class_I_Rep_2 3 564.2594604492188 2 564.259536 1126.50452 NaN NaN NaN NaN NaN NaN NaN 24.842 1 28.325 27.825 28.825 3.483 0 0 0 0.40604 1 3358 3358 2.5775 0 1 + 56299 29567 35391 35409 64732 64732 -0.053672262715736 YIYERKRV 8 Unmodified _YIYERKRV_ 0 0 0 REV__Tigger2_dup1316|chr7:101827607-101827970:-|1.0887672735844294|0.0135885015960495|6.32|150.0|18|2|anti-sense REV__Tigger2_dup1316|chr7:101827607-101827970:-|1.0887672735844294|0.0135885015960495|6.32|150.0|18|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 563.8214721679688 2 563.822015 1125.62948 0.40641 0.00022914 -0.14084 -7.941E-05 0.26557 0.00014973 563.8219096500864 48.059 0.34462 48.059 47.849 48.194 0 67 38 3 0 0 0 0.82752 1 9936 9936 4.3292 0 1 388880 + 56300 32630 35392 35410 64733 64733 0.07168826979818732 YIYFWTLH 8 Unmodified _YIYFWTLH_ 0 0 0 L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|108|2|anti-sense L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|108|2|anti-sense L1MA9_dup14181|chr15:100954214-100956444:-|1.4436139994487371|0.0099277598315577|7.18|150.0|108|2|anti-sense MSMS UPN48_class_I_Rep_2 6 571.795166015625 2 571.78711 1141.55967 NaN NaN NaN NaN NaN NaN NaN 27.546 1 31.177 30.677 31.677 3.6311 0 0 0 0.40604 1 3665 3665 2.5775 0 1 56301 10109 35393 35411 64734 64734 -0.005450516887776757 YIYIFLNFA 9 Unmodified _YIYIFLNFA_ 0 0 0 ENST00000591924.5_1_18:33234574-33234712:+|nuORF ENST00000591924.5_1_18:33234574-33234712:+|nuORF ENST00000591924.5_1_18:33234574-33234712:+|nuORF MSMS UPN46_class_I_Rep_3 1 582.3108520507812 2 582.310418 1162.60628 NaN NaN NaN NaN NaN NaN NaN 80.938 1 80.938 80.438 81.438 0 0 0 0 0.40038 1 19091 19091 0.6015 0 1 56302 7626 35394 35412 64735 64735 0.03148388142517433 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2994995117188 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 75.849 1 79.253 78.753 79.753 3.4034 0 0 0 0.37152 1 18743 18743 17.087 0 1 56303 24098 35395 35413 64736 64736 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.298095703125 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 76.046 1 79.45 78.95 79.95 3.4034 0 0 0 0.37152 1 18802 18802 17.087 0 1 56304 24098 35395 35413 64737 64737 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2994995117188 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 76.063 1 79.466 78.966 79.966 3.4034 0 0 0 0.37152 1 18807 18807 17.087 0 1 56305 24098 35395 35413 64738 64738 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.3006591796875 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 76.197 1 79.601 79.101 80.101 3.4034 0 0 0 0.37152 1 18844 18844 17.087 0 1 56306 24098 35395 35413 64739 64739 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2991333007812 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 76.233 1 79.638 79.138 80.138 3.4053 0 0 0 0.37152 1 18855 18855 17.087 0 1 56307 24098 35395 35413 64740 64740 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2997436523438 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.462 1 80.891 80.391 81.391 3.4289 0 0 0 0.37152 1 19221 19221 17.087 0 1 56308 24098 35395 35413 64741 64741 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.298095703125 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.541 1 80.97 80.47 81.47 3.4289 0 0 0 0.37152 1 19244 19244 17.087 0 1 56309 24098 35395 35413 64742 64742 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.299072265625 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.578 1 81.007 80.507 81.507 3.4289 0 0 0 0.37152 1 19255 19255 17.087 0 1 56310 24098 35395 35413 64743 64743 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2993774414062 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.669 1 81.098 80.598 81.598 3.4289 0 0 0 0.37152 1 19281 19281 17.087 0 1 56311 24098 35395 35413 64744 64744 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2994995117188 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.794 1 81.223 80.723 81.723 3.4289 0 0 0 0.39167 1 19318 19318 11.114 0 1 56312 24098 35395 35413 64745 64745 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2987060546875 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.948 1 81.377 80.877 81.877 3.4289 0 0 0 0.39167 1 19361 19361 11.114 0 1 56313 24098 35395 35413 64746 64746 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2987670898438 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 82.882 1 86.421 85.921 86.921 3.5386 0 0 0 0.37152 1 20715 20715 17.087 0 1 56314 24098 35395 35413 64747 64747 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 555.2994995117188 2 555.299519 1108.58448 0.46445 0.00025791 -0.89531 -0.00049716 -0.43086 -0.00023925 555.299028385771 76.125 0.38046 79.447 79.231 79.611 3.3216 55 38 2 0 0 0 0.82752 1 18845 18845 17.087 0 1 88968 56315 24098 35395 35413 64748 64748 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_2 3 555.2988891601562 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 74.879 1 78.191 77.691 78.691 3.3127 0 0 0 0.37152 1 18464 18464 17.087 0 1 56316 24098 35395 35413 64749 64749 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_2 3 555.2998046875 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 76.348 1 79.669 79.169 80.169 3.3216 0 0 0 0.39167 1 18896 18896 11.114 0 1 56317 24098 35395 35413 64750 64750 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 555.2998046875 2 555.299519 1108.58448 0.4592 0.00025499 -0.76874 -0.00042688 -0.30954 -0.00017189 555.299220310529 76.349 0.42075 79.607 79.326 79.746 3.2573 60 42 2 0 0 0 0.82752 1 18938 18938 11.114 0 1 69338 56318 24098 35395 35413 64751 64751 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.298828125 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 76.547 1 79.804 79.304 80.304 3.2573 0 0 0 0.37152 1 19035 19035 17.087 0 1 56319 24098 35395 35413 64752 64752 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2999877929688 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 77.975 1 81.257 80.757 81.757 3.2816 0 0 0 0.37152 1 19429 19429 17.087 0 1 56320 24098 35395 35413 64753 64753 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2982788085938 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 78.025 1 81.307 80.807 81.807 3.2816 0 0 0 0.37152 1 19443 19443 17.087 0 1 56321 24098 35395 35413 64754 64754 0.03453583393934423 YIYIYVYI 8 Unmodified _YIYIYVYI_ 0 0 0 Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense Zaphod2_dup50|chr1:206045499-206046226:-|1.598534810621581|0.0055827937205415|8.16|145.0|54|3|anti-sense MSMS UPN47_class_I_Rep_3 4 555.2998046875 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 78.159 1 81.44 80.94 81.94 3.2816 0 0 0 0.39167 1 19481 19481 11.114 0 1 56322 24098 35395 35413 64755 64755 0.03453583393934423 YIYKFRQELRY 11 Unmodified _YIYKFRQELRY_ 0 0 0 REV__L1MB7_dup14221|chr10:103158095-103158534:+|1.835213173151094|0.0088075661348427|7.7|151.0|4|1|sense REV__L1MB7_dup14221|chr10:103158095-103158534:+|1.835213173151094|0.0088075661348427|7.7|151.0|4|1|sense MSMS UPN46_class_I_Rep_3 1 526.8218994140625 3 526.952426 1577.83545 NaN NaN NaN NaN NaN NaN NaN 62.433 1 62.433 61.933 62.933 0 0 0 0 0.38417 1 13956 13956 0.40827 0 1 + 56323 26141 35396 35414 64756 64756 0.06964355368450015 YIYLDCVCI 9 Unmodified _YIYLDCVCI_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|250|1|anti-sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|250|1|anti-sense MSMS UPN48_class_I_Rep_1 5 552.7583618164062 2 552.758846 1103.50314 NaN NaN NaN NaN NaN NaN NaN 112.75 1 116.38 115.88 116.88 3.6321 0 0 0 0.39428 1 27370 27370 2.0598 0.21551 1 + 56324 25852 35397 35415 64757 64757 -0.04447183631987173 YIYLGCSY 8 Unmodified _YIYLGCSY_ 0 0 0 REV__L1MA5A_dup2067|chrX:107071406-107074267:+|3.2323439043985345|0.3545235289889302|3.19|149.0|195|3|anti-sense REV__L1MA5A_dup2067|chrX:107071406-107074267:+|3.2323439043985345|0.3545235289889302|3.19|149.0|195|3|anti-sense MSMS UPN46_class_I_Rep_3 1 491.1124572753906 2 491.222954 980.431355 NaN NaN NaN NaN NaN NaN NaN 49.481 1 49.481 48.981 49.981 0 0 0 0 0.4032 1 10389 10389 6.3541 0.59368 1 + 56325 25413 35398 35416 64758 64758 -0.05964354994171117 YIYLKQFN 8 Unmodified _YIYLKQFN_ 0 0 0 ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 ENSG00000140463|ENST00000268057|BBS4 ENSG00000140463|ENST00000268057|BBS4 MSMS UPN48_class_I_Rep_3 7 544.7930297851562 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 111.21 1 114.87 114.37 115.37 3.6654 0 0 0 0.40738 1 26387 26387 0.79363 0 1 56326 3177 35399 35417 64759 64759 0.0299493096565584 YIYLTAIL 8 Unmodified _YIYLTAIL_ 0 0 0 L1MD1_dup2858|chr7:44657620-44658847:-|1.4719675489142066|0.0597491766102349|4.62|150.0|55|2|anti-sense L1MD1_dup2858|chr7:44657620-44658847:-|1.4719675489142066|0.0597491766102349|4.62|150.0|55|2|anti-sense L1MD1_dup2858|chr7:44657620-44658847:-|1.4719675489142066|0.0597491766102349|4.62|150.0|55|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.2858581542969 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 33.347 1 37.037 36.537 37.537 3.6896 0 0 0 0.40738 1 5172 5172 0.79363 0 1 56327 11930 35400 35418 64760 64760 0.0727331422244788 YIYQNIMFI 9 Unmodified _YIYQNIMFI_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense MSMS UPN48_class_I_Rep_2 6 602.8065795898438 2 602.807185 1203.59982 NaN NaN NaN NaN NaN NaN NaN 74.307 1 77.885 77.385 78.385 3.5779 0 0 0 0.38478 1 17479 17479 4.3292 0.38484 1 56328 12763 35401 35419 64761 64761 0.006161269194990382 YIYQNIMFI 9 Unmodified _YIYQNIMFI_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense MSMS UPN48_class_I_Rep_2 6 602.80859375 2 602.807185 1203.59982 NaN NaN NaN NaN NaN NaN NaN 74.583 1 78.173 77.673 78.673 3.59 0 0 0 0.35339 1 17557 17557 7.9102 0 1 56329 12763 35401 35419 64762 64762 0.006161269194990382 YIYQNIMFI 9 Unmodified _YIYQNIMFI_ 0 0 0 L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense L1ME3Cz_dup11385|chr18:63229931-63232913:+|4.852492944901628|0.2527371114349332|4.26|151.0|53|2|sense MSMS UPN48_class_I_Rep_3 7 602.8082275390625 2 602.807185 1203.59982 NaN NaN NaN NaN NaN NaN NaN 74.695 1 78.261 77.761 78.761 3.5659 0 0 0 0.35339 1 17508 17508 7.9102 1.187 1 56330 12763 35401 35419 64763 64763 0.006161269194990382 YIYQPYKI 8 Unmodified _YIYQPYKI_ 0 0 0 REV__L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|29|3|sense REV__L1MB7_dup22546|chr22:27903809-27904641:+|2.885776010046481|0.1269100175201525|4.51|151.0|29|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 544.2691650390625 2 544.294768 1086.57498 0.57948 0.00031541 -1.799 -0.00097919 -1.2195 -0.00066378 544.2959214152597 61.401 0.037609 64.869 64.841 64.879 3.4678 5 3 2 0 0 0 0.72333 1 13650 13650 5.7604 0 1 60841 + 56331 26225 35402 35420 64764 64764 0.03515815108403331 YIYVYIKY 8 Unmodified _YIYVYIKY_ 0 0 0 L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.8043823242188 2 562.804968 1123.59538 0.21284 0.00011979 -0.38075 -0.00021429 -0.16791 -9.4501E-05 562.8048316990057 49.068 0.57773 52.727 52.405 52.982 3.6592 71 41 2 0 0 0 0.82752 1 10637 10637 9.3474 1.4373 1 103110 56332 12913 35403 35421 64765 64765 0.0385298576823061 YIYVYIKY 8 Unmodified _YIYVYIKY_ 0 0 0 L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 562.8056030273438 2 562.804968 1123.59538 0.4078 0.00022951 -0.11129 -6.2632E-05 0.29652 0.00016688 562.8048372804021 49.459 0.60875 52.805 52.461 53.07 3.3465 50 39 2 0 0 0 0.82752 1 10787 10787 5.7604 2.1639 1 101410 56333 12913 35403 35421 64766 64766 0.0385298576823061 YIYVYIKY 8 Unmodified _YIYVYIKY_ 0 0 0 L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense L1ME4b_dup20543|chr20:8400645-8401253:-|1.6196430001732076|0.0203694658879222|6.31|151.0|32|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 562.804968 1123.59538 0.45493 0.00025604 -0.15554 -8.7541E-05 0.29939 0.0001685 562.8048395119771 49.493 0.39595 52.72 52.502 52.898 3.2274 -0.030701 9.6123E-05 NaN 5.7604 38 22 2 NaN NaN NaN NaN 0 NaN NaN 0 87032 56334 12913 35403 35421 0.0385298576823061 YIYVYIYPI 9 Unmodified _YIYVYIYPI_ 0 0 0 REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|108|3|anti-sense REV__L1PB3_dup2352|chr10:144761-146677:-|1.4028573191574052|0.0947324779177642|3.89|151.0|108|3|anti-sense MSMS UPN46_class_I_Rep_3 1 603.8255615234375 2 603.825901 1205.63725 NaN NaN NaN NaN NaN NaN NaN 64.211 1 64.211 63.711 64.711 0 0 0 0 0.40038 1 14441 14441 0.6015 0 1 + 56335 30556 35404 35422 64767 64767 0.042655414567661865 YIYYIHVW 8 Unmodified _YIYYIHVW_ 0 0 0 REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|246|3|anti-sense REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|246|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 579.3097534179688 2 578.794935 1155.57532 0.52853 0.00030591 -2.9346 -0.0016985 -2.406 -0.0013926 579.2939279677307 63.846 0.233 67.304 67.224 67.457 3.4578 21 16 2 0 0 0 0.72333 1 14450 14450 0.79363 0 1 94080 + 56336 24041 35405 35423 64768 64768 0.003752348282660023 YKAFWFKI 8 Unmodified _YKAFWFKI_ 0 0 0 L1M7_dup2473|chr13:21440990-21441377:-|2.3155184861496374|0.024359382842244|6.57|151.0|22|3|anti-sense L1M7_dup2473|chr13:21440990-21441377:-|2.3155184861496374|0.024359382842244|6.57|151.0|22|3|anti-sense L1M7_dup2473|chr13:21440990-21441377:-|2.3155184861496374|0.024359382842244|6.57|151.0|22|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 552.3318481445312 2 551.807845 1101.60114 0.28913 0.00015954 2.7698 0.0015284 3.0589 0.0016879 551.8081242986723 50.106 0.081188 53.727 53.688 53.769 3.621 6 4 2 0 0 0 0.72333 1 10122 10122 5.2307 0.47466 1 48118 56337 9234 35406 35424 64769 64769 0.05440129070552757 YKAGLGKY 8 Unmodified _YKAGLGKY_ 0 0 0 ENST00000372722.7_1_20:44037543-44038777:+|nuORF ENST00000372722.7_1_20:44037543-44038777:+|nuORF ENST00000372722.7_1_20:44037543-44038777:+|nuORF MSMS UPN46_class_I_Rep_3 1 450.2508239746094 2 450.252903 898.491253 NaN NaN NaN NaN NaN NaN NaN 40.67 1 40.67 40.17 41.17 0 0 0 0 0.40604 1 7909 7909 2.5775 0.51773 1 56338 6402 35407 35425 64770 64770 0.037947037313642795 YKAKQPTAL 9 Unmodified _YKAKQPTAL_ 0 0 0 REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|15|1|sense REV__L1MB7_dup18340|chr15:75081827-75083490:+|2.0356842166985847|0.0616332089698763|5.05|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 510.7991943359375 2 510.297842 1018.58113 0.28615 0.00014602 -0.23111 -0.00011793 0.05504 2.8087E-05 510.29771441238086 68.035 0.64867 71.487 71.13 71.778 3.4517 65 53 2 0 0 0 0.36392 1 15707 15707 10.074 0 1 94066 + 56339 26181 35408 35426 64771 64771 0.07258333339939327 YKAKQSYII 9 Unmodified _YKAKQSYII_ 0 0 0 ENST00000475768.1_1_11:115821237-115821417:-|nuORF ENST00000475768.1_1_11:115821237-115821417:-|nuORF ENST00000475768.1_1_11:115821237-115821417:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 557.3203125 2 557.318774 1112.623 0.37508 0.00020904 -0.034961 -1.9484E-05 0.34012 0.00018956 557.3186267574554 65.115 0.59547 68.471 68.405 69.001 3.3557 59 34 2 0 0 0 0.43153 1 15583 15583 6.2058 0 1 123320 56340 6960 35409 35427 64772 64772 0.07118889028470221 YKAKQSYII 9 Unmodified _YKAKQSYII_ 0 0 0 ENST00000475768.1_1_11:115821237-115821417:-|nuORF ENST00000475768.1_1_11:115821237-115821417:-|nuORF ENST00000475768.1_1_11:115821237-115821417:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 557.8218383789062 2 557.318774 1112.623 0.37543 0.00020924 0.26854 0.00014966 0.64397 0.0003589 557.3187687319382 65.312 0.38197 68.568 68.358 68.74 3.2556 48 28 2 0 0 0 0.37599 1 15599 15599 9.3831 0 1 125230 56341 6960 35409 35427 64773 64773 0.07118889028470221 YKALFPFLS 9 Unmodified _YKALFPFLS_ 0 0 0 L1M4_dup15902|chr14:31000001-31000606:+|1.2259230990516223|0.0048789975584422|7.97|150.0|36|2|anti-sense L1M4_dup15902|chr14:31000001-31000606:+|1.2259230990516223|0.0048789975584422|7.97|150.0|36|2|anti-sense L1M4_dup15902|chr14:31000001-31000606:+|1.2259230990516223|0.0048789975584422|7.97|150.0|36|2|anti-sense MSMS UPN46_class_I_Rep_3 1 543.3040771484375 2 543.305136 1084.59572 NaN NaN NaN NaN NaN NaN NaN 75.243 1 75.243 74.743 75.743 0 0 0 0 0.36505 1 17483 17483 7.2892 0 1 56342 8853 35410 35428 64774 64774 0.05680405488078577 YKCLLGLLGPE 11 Unmodified _YKCLLGLLGPE_ 0 0 0 L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|231|1|anti-sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|231|1|anti-sense L1PA7_dup12624|chr20:13375086-13381527:-|4.958648061447407|0.2355668383424221|4.4|151.0|231|1|anti-sense MSMS UPN48_class_I_Rep_1 5 603.3355712890625 2 603.333567 1204.65258 NaN NaN NaN NaN NaN NaN NaN 47.239 1 50.761 50.261 51.261 3.5219 0 0 0 0.35398 1 9313 9313 8.7454 2.0222 1 56343 14755 35411 35429 64775 64775 0.058440849823227836 YKDHIRHR 8 Unmodified _YKDHIRHR_ 0 0 0 REV__ENST00000258662.2_1_13:48620072-48620165:+|nuORF REV__ENST00000258662.2_1_13:48620072-48620165:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 562.8076782226562 2 562.807231 1123.59991 -0.20602 -0.00011595 -1.0584 -0.0005957 -1.2645 -0.00071165 562.8066716058081 28.745 0.56718 32.079 31.79 32.357 3.3337 64 47 2 0 0 0 0.82752 1 4581 4581 4.3292 0 1 70601 + 56344 21544 35412 35430 64776 64776 0.0430530775436182 YKDKKPLSK 9 Unmodified _YKDKKPLSK_ 0 0 0 REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|107|3|sense REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|107|3|sense MSMS UPN47_class_I_Rep_3 4 553.8295288085938 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 93.92 1 97.326 96.826 97.826 3.4068 0 0 0 0.39518 1 23394 23394 1.8442 0 1 + 56345 24066 35413 35431 64777 64777 0.10094577919790026 YKDKQIQSKES 11 Unmodified _YKDKQIQSKES_ 0 0 0 REV__L1MB4_dup6961|chr14:89331035-89331475:-|1.1090695787328595|0.0103437906691024|6.74|151.0|16|3|sense REV__L1MB4_dup6961|chr14:89331035-89331475:-|1.1090695787328595|0.0103437906691024|6.74|151.0|16|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.9052734375 3 451.905141 1352.69359 -1.0611 -0.00047953 0.29339 0.00013258 -0.76774 -0.00034695 451.90533477329296 16.002 0.79773 19.364 19.134 19.932 3.3619 186 96 3 0 0 0 0.68024 1 1013 1013 0.50596 0 1 132870 + 56346 26010 35414 35432 64778 64778 0.03135517555460865 YKDSVQVF 8 Unmodified _YKDSVQVF_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000576107.5_1_16:70497084-70500232:+|nuORF;ENST00000571487.5_1_16:70497084-70500964:+|nuORF;ENST00000464499.5_1_16:70497084-70500964:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MULTI-MSMS UPN48_class_I_Rep_2 6 493.25244140625 2 493.2531 984.491647 0.23218 0.00011452 -0.36023 -0.00017768 -0.12805 -6.3162E-05 493.2528385865709 38.207 0.50473 41.923 41.567 42.072 3.7164 69 45 2 0 0 0 0.82752 1 6563 6563 10.074 0 1 97191 56347 3758 35415 35433 64779 64779 -0.0012192133942789951 YKELLKAW 8 Unmodified _YKELLKAW_ 0 0 0 REV__L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|23|1|sense REV__L1MA2_dup7378|chr21:15899352-15902769:+|2.031893860286526|0.0809771460903652|4.65|151.0|23|1|sense MSMS UPN48_class_I_Rep_2 6 525.8023071289062 2 525.80276 1049.59097 NaN NaN NaN NaN NaN NaN NaN 42.589 1 46.347 45.847 46.847 3.7579 0 0 0 0.40604 1 7902 7902 2.5775 0 1 + 56348 24944 35416 35434 64780 64780 0.06815521345333764 YKELMCYH 8 Unmodified _YKELMCYH_ 0 0 0 MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|42|2|anti-sense MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|42|2|anti-sense MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_3 4 543.7432250976562 2 543.740988 1085.46742 NaN NaN NaN NaN NaN NaN NaN 22.948 1 26.298 25.798 26.798 3.3503 0 0 0 0.40625 1 2833 2833 2.3027 0 1 56349 15846 35417 35435 64781 64781 -0.07189221088947306 YKELVKRP 8 Unmodified _YKELVKRP_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MULTI-MSMS UPN46_class_I_Rep_3 1 516.8143310546875 2 516.813659 1031.61277 0.12924 6.6794E-05 1.3256 0.00068511 1.4549 0.0007519 516.8143531389616 32.934 0.39806 32.934 32.761 33.159 0 39 27 2 0 0 0 0.82752 1 5720 5720 0.69038 0 1 63131 56350 5186 35418 35436 64782 64782 0.09822326093922129 YKEMPWMH 8 Unmodified _YKEMPWMH_ 0 0 0 REV__MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|62|3|sense REV__MER57-int_dup988|chr14:92617333-92619369:-|1.4345795938952783|0.0853357096453572|4.07|151.0|62|3|sense MSMS UPN46_class_I_Rep_3 1 561.2514038085938 2 561.24898 1120.48341 NaN NaN NaN NaN NaN NaN NaN 89.871 1 89.871 89.371 90.371 0 0 0 0 0.40738 1 21644 21644 0.79363 0 1 + 56351 31445 35419 35437 64783 64783 -0.07201514852067703 YKEPQKKNP 9 Unmodified _YKEPQKKNP_ 0 0 0 REV__L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|194|3|sense REV__L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|194|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.309326171875 2 566.31148 1130.60841 0.024574 1.3916E-05 -0.29685 -0.00016811 -0.27227 -0.00015419 566.311414264965 42.668 0.43042 46.355 46.118 46.548 3.6875 49 28 2 0 0 0 0.48643 1 8735 8735 2.0598 2.0598 1 54887 + 56352 30540 35420 35438 64784 64784 0.04832816880343671 YKETYLIH 8 Unmodified _YKETYLIH_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MSMS UPN46_class_I_Rep_3 1 533.7821655273438 2 533.782025 1065.5495 NaN NaN NaN NaN NaN NaN NaN 77.066 1 77.066 76.566 77.566 0 0 0 0 0.40738 1 18000 18000 0.79363 0 1 56353 1984 35421 35439 64785 64785 0.019343405859899576 YKFFHPFF 8 Unmodified _YKFFHPFF_ 0 0 0 REV__L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|44|2|anti-sense REV__L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|44|2|anti-sense MSMS UPN46_class_I_Rep_3 1 566.7847290039062 2 566.78437 1131.55419 NaN NaN NaN NaN NaN NaN NaN 20.097 1 20.097 19.597 20.597 0 0 0 0 0.40798 1 2031 2031 0 0 1 + 56354 26142 35422 35440 64786 64786 -0.00632730480583632 YKFFHPFF 8 Unmodified _YKFFHPFF_ 0 0 0 REV__L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|44|2|anti-sense REV__L1MB7_dup14623|chr11:14804640-14805450:+|2.492470008443913|0.0575699894039653|5.44|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 566.7842407226562 2 566.78437 1131.55419 NaN NaN NaN NaN NaN NaN NaN 17.507 1 21.159 20.659 21.659 3.6518 0 0 0 0.40798 1 1034 1034 0 0 1 + 56355 26142 35422 35440 64787 64787 -0.00632730480583632 YKFFVGIP 8 Unmodified _YKFFVGIP_ 0 0 0 L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|64|2|anti-sense L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|64|2|anti-sense L1MB7_dup12372|chrX:81299778-81301050:-|1.9386242823286168|0.0195984902944571|6.63|150.0|64|2|anti-sense MSMS UPN48_class_I_Rep_3 7 485.7720947265625 2 485.773471 969.53239 NaN NaN NaN NaN NaN NaN NaN 78.221 1 81.843 81.343 82.343 3.6216 0 0 0 0.40738 1 18510 18510 0.79363 0 1 56356 10697 35423 35441 64788 64788 0.04640464770852759 YKFKDWVL 8 Unmodified _YKFKDWVL_ 0 0 0 ENST00000482238.5_1_6:39686319-39693155:-|nuORF ENST00000482238.5_1_6:39686319-39693155:-|nuORF ENST00000482238.5_1_6:39686319-39693155:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 549.8031616210938 2 549.80276 1097.59097 0.47044 0.00025865 0.49635 0.00027289 0.96678 0.00053154 549.8029949123752 99.946 0.11893 103.55 103.47 103.59 3.6065 23 14 2 0 0 0 0.82752 1 24138 24138 2.5775 0 1 188390 56357 7004 35424 35442 64789 64789 0.04607521345337773 YKFLDQFVSF 10 Unmodified _YKFLDQFVSF_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 647.3294677734375 2 647.329339 1292.64412 0.5879 0.00038056 -0.17862 -0.00011563 0.40928 0.00026494 647.3290845860802 58.834 1.1423 62.333 61.952 63.094 3.4987 186 72 4 0 0 0 0.36548 1 12796 12796 22.658 2.2436 1 952490 56358 11001 35425 35443 64790 64790 0.009508543373385692 YKFLDQFVSF 10 Unmodified _YKFLDQFVSF_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 431.8885498046875 3 431.888651 1292.64412 0.17808 7.6911E-05 -0.030092 -1.2996E-05 0.14799 6.3915E-05 431.88870619260814 58.846 1.6525 62.345 61.685 63.337 3.4987 252 106 4 0 0 0 0.3776 1 12845 12845 14.218 3.3192 1 895020 56359 11001 35425 35443 64791 64791 0.009508543373385692 YKFLDQFVSF 10 Unmodified _YKFLDQFVSF_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 647.3296508789062 2 647.329339 1292.64412 0.60461 0.00039138 -0.19671 -0.00012733 0.40791 0.00026405 647.3291055832264 58.749 1.2735 62.272 61.761 63.034 3.5231 192 86 3 0 0 0 0.21133 3 12787 12749;12787;12832 49.554 16.769 1 1313000 56360 11001 35425 35443 64792;64793;64794 64793 0.009508543373385692 YKFLDQFVSF 10 Unmodified _YKFLDQFVSF_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 3 431.888651 1292.64412 0.063246 2.7315E-05 -0.05017 -2.1668E-05 0.013076 5.6472E-06 431.88868316741764 58.969 1.3343 62.456 61.752 63.087 3.487 0.12511 -4.4539E-05 NaN 14.218 197 85 3 NaN NaN NaN NaN 0 NaN NaN 0 791530 56361 11001 35425 35443 0.009508543373385692 YKFLDQFVSF 10 Unmodified _YKFLDQFVSF_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|340|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 431.888651 1292.64412 0.085631 3.6983E-05 0.10764 4.6486E-05 0.19327 8.347E-05 432.22283302966235 58.669 1.8 62.192 61.539 63.339 3.5231 -0.13866 0.00015992 NaN 14.218 240 126 3 NaN NaN NaN NaN 0 NaN NaN 0 667990 56362 11001 35425 35443 0.009508543373385692 YKFLKALI 8 Unmodified _YKFLKALI_ 0 0 0 ENST00000484268.1_1_7:48352666-48443694:+|nuORF ENST00000484268.1_1_7:48352666-48443694:+|nuORF ENST00000484268.1_1_7:48352666-48443694:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.3187255859375 2 498.318046 994.621539 NaN NaN NaN NaN NaN NaN NaN 89.223 1 92.897 92.397 93.397 3.6738 0 0 0 0.40746 1 22306 22306 0.69038 0 1 56363 7020 35426 35444 64795 64795 0.12401299730379378 YKFLKALI 8 Unmodified _YKFLKALI_ 0 0 0 ENST00000484268.1_1_7:48352666-48443694:+|nuORF ENST00000484268.1_1_7:48352666-48443694:+|nuORF ENST00000484268.1_1_7:48352666-48443694:+|nuORF MSMS UPN47_class_I_Rep_1 2 498.3186340332031 2 498.318046 994.621539 NaN NaN NaN NaN NaN NaN NaN 89.655 1 93.329 92.829 93.829 3.6738 0 0 0 0.40746 1 22420 22420 0.69038 0 1 56364 7020 35426 35444 64796 64796 0.12401299730379378 YKFYFHVY 8 Unmodified _YKFYFHVY_ 0 0 0 REV__L1MEc_dup12537|chr11:20498033-20498446:+|1.0059614920404427|0.107380468942389|3.23|150.0|21|1|anti-sense REV__L1MEc_dup12537|chr11:20498033-20498446:+|1.0059614920404427|0.107380468942389|3.23|150.0|21|1|anti-sense MSMS UPN47_class_I_Rep_2 3 583.7867431640625 2 583.78711 1165.55967 NaN NaN NaN NaN NaN NaN NaN 59.664 1 62.937 62.437 63.437 3.2731 0 0 0 0.40738 1 13904 13904 0.79363 0 1 + 56365 28367 35427 35445 64797 64797 -0.016490516887643025 YKFYFHVY 8 Unmodified _YKFYFHVY_ 0 0 0 REV__L1MEc_dup12537|chr11:20498033-20498446:+|1.0059614920404427|0.107380468942389|3.23|150.0|21|1|anti-sense REV__L1MEc_dup12537|chr11:20498033-20498446:+|1.0059614920404427|0.107380468942389|3.23|150.0|21|1|anti-sense MSMS UPN48_class_I_Rep_3 7 583.7864990234375 2 583.78711 1165.55967 NaN NaN NaN NaN NaN NaN NaN 24.365 1 28.134 27.634 28.634 3.769 0 0 0 0.40738 1 2808 2808 0.79363 0 1 + 56366 28367 35427 35445 64798 64798 -0.016490516887643025 YKGIKQNNF 9 Unmodified _YKGIKQNNF_ 0 0 0 L1M5_dup1613|chr1:92251073-92251690:+|1.8413485253443795|0.3942648036471511|2.22|151.0|10|2|sense L1M5_dup1613|chr1:92251073-92251690:+|1.8413485253443795|0.3942648036471511|2.22|151.0|10|2|sense L1M5_dup1613|chr1:92251073-92251690:+|1.8413485253443795|0.3942648036471511|2.22|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 556.2963256835938 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 86.151 1 89.921 89.421 90.421 3.7701 0 0 0 0.39518 1 20453 20453 1.8442 0 1 56367 9100 35428 35446 64799 64799 0.031325477088330445 YKGKKERPRS 10 Unmodified _YKGKKERPRS_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENST00000491662.1_1_8:98877671-98877710:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS UPN47_class_I_Rep_1 2 624.8624877929688 2 624.862203 1247.70985 -0.074516 -4.6562E-05 -0.32345 -0.00020211 -0.39796 -0.00024867 624.8620129932029 12.107 0.36689 15.557 15.462 15.829 3.45 119 50 4 0 0 0 0.39436 2 15 15;38 22.658 4.285 1 197360 56368 5156 35429 35447 64800;64801 64800 0.09590688302887429 YKGKKERPRS 10 Unmodified _YKGKKERPRS_ 0 0 0 ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENST00000491662.1_1_8:98877671-98877710:+|nuORF ENSG00000186468|ENST00000296674|RPS23 ENSG00000186468|ENST00000296674|RPS23 MULTI-MSMS UPN47_class_I_Rep_2 3 416.90997314453125 3 416.910561 1247.70985 -0.97663 -0.00040717 -0.14744 -6.1469E-05 -1.1241 -0.00046864 416.9104275953733 12.174 0.54501 15.563 15.471 16.017 3.3885 164 73 4 0 0 0 0.45221 1 33 33 15.538 4.0437 1 349400 56369 5156 35429 35447 64802 64802 0.09590688302887429 YKGVPFSF 8 Unmodified _YKGVPFSF_ 0 0 0 REV__L1ME1_dup8340|chr4:105407368-105408005:+|1.5101231102696928|0.219212113695918|2.78|151.0|50|3|anti-sense REV__L1ME1_dup8340|chr4:105407368-105408005:+|1.5101231102696928|0.219212113695918|2.78|151.0|50|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 472.74749755859375 2 472.747453 943.480354 0.2348 0.000111 0.023054 1.0899E-05 0.25785 0.0001219 472.747277383163 59.383 1.7954 62.864 62.409 64.205 3.4801 294 124 4 0 0 0 0.82752 6 12931 12931;12972;13055;13170;13209;13251 104.8 4.4277 1 2300700 + 56370 27805 35430 35448 64803;64804;64805;64806;64807;64808 64803 0.006353013570901567 YKGVPFSF 8 Unmodified _YKGVPFSF_ 0 0 0 REV__L1ME1_dup8340|chr4:105407368-105408005:+|1.5101231102696928|0.219212113695918|2.78|151.0|50|3|anti-sense REV__L1ME1_dup8340|chr4:105407368-105408005:+|1.5101231102696928|0.219212113695918|2.78|151.0|50|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 472.7472839355469 2 472.747453 943.480354 0.29515 0.00013953 -0.045052 -2.1298E-05 0.2501 0.00011824 472.7472540157907 59.374 1.5552 62.861 62.382 63.937 3.4868 298 117 4 0 0 0 0.82752 4 12902 12902;13107;13150;13191 81.613 0 1 2529600 + 56371 27805 35430 35448 64809;64810;64811;64812 64809 0.006353013570901567 YKGVPFSF 8 Unmodified _YKGVPFSF_ 0 0 0 REV__L1ME1_dup8340|chr4:105407368-105408005:+|1.5101231102696928|0.219212113695918|2.78|151.0|50|3|anti-sense REV__L1ME1_dup8340|chr4:105407368-105408005:+|1.5101231102696928|0.219212113695918|2.78|151.0|50|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 472.7474670410156 2 472.747453 943.480354 0.17298 8.1774E-05 0.11861 5.6072E-05 0.29158 0.00013785 472.7473076544597 59.205 1.5398 62.728 62.24 63.779 3.5231 285 116 4 0 0 0 0.82752 7 12785 12785;12828;12868;12983;13021;13058;13117 104.8 0 1 2244100 + 56372 27805 35430 35448 64813;64814;64815;64816;64817;64818;64819 64813 0.006353013570901567 YKGWPPVA 8 Unmodified _YKGWPPVA_ 0 0 0 REV__ENST00000567385.5_1_16:48244807-48265838:-|nuORF REV__ENST00000567385.5_1_16:48244807-48265838:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_1 5 459.17181396484375 2 459.247621 916.480688 0.12617 5.7942E-05 -1.1914 -0.00054716 -1.0653 -0.00048922 459.24655602296986 26.841 0.05146 30.404 30.376 30.427 3.5629 7 4 3 0 0 0 0.72333 1 3365 3365 0.79363 0 1 17578 + 56373 18724 35431 35449 64820 64820 0.019107210769448102 YKGYKSNII 9 Unmodified _YKGYKSNII_ 0 0 0 L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|43|2|anti-sense L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|43|2|anti-sense L1M4b_dup658|chr2:240485893-240486662:-|1.034160805273036|0.0644508878230112|4.0|151.0|43|2|anti-sense MSMS UPN47_class_I_Rep_1 2 543.3019409179688 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 54.833 1 58.334 57.834 58.834 3.5014 0 0 0 0.38916 1 12399 12399 3.2813 0 1 56374 9029 35432 35450 64821 64821 0.05278315994382865 YKHLALEL 8 Unmodified _YKHLALEL_ 0 0 0 L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|30|1|sense L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|30|1|sense L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|30|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 493.7867736816406 2 493.78711 985.559667 0.24757 0.00012225 -0.80065 -0.00039535 -0.55308 -0.00027311 493.78654591612695 108.78 0.44582 112.45 112.31 112.76 3.6751 75 48 3 0 0 0 0.82752 1 25854 25854 0 0 1 10972000 56375 15143 35433 35451 64822 64822 0.0663094831120361 YKHLHTNKIY 10 Unmodified _YKHLHTNKIY_ 0 0 0 L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|38|3|sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|38|3|sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 439.5752258300781 3 439.575178 1315.70371 0.083026 3.6496E-05 -0.24789 -0.00010897 -0.16487 -7.2472E-05 439.57507624231715 37.354 1.4587 41.057 40.64 42.099 3.7021 278 149 2 0 0 0 0.55335 1 6352 6352 5.0475 5.0475 1 246540 56376 10460 35434 35452 64823 64823 0.058481700713628015 YKHLHTNKIY 10 Unmodified _YKHLHTNKIY_ 0 0 0 L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|38|3|sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|38|3|sense L1MB3_dup8411|chr9:85732537-85733971:+|1.7441203720303888|0.0207176943674132|6.4|151.0|38|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 439.574951171875 3 439.575178 1315.70371 0.054034 2.3752E-05 -0.25207 -0.0001108 -0.19803 -8.7051E-05 439.5750427030806 37.451 1.2253 41.114 40.644 41.869 3.663 237 126 2 0 0 0 0.55068 1 6296 6296 5.4027 0 1 209620 56377 10460 35434 35452 64824 64824 0.058481700713628015 YKHQAEQI 8 Unmodified _YKHQAEQI_ 0 0 0 L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 508.761474609375 2 508.761623 1015.50869 0.22033 0.00011209 -0.29488 -0.00015002 -0.074549 -3.7928E-05 508.76145816402476 46.068 0.70203 49.587 49.337 50.039 3.5192 84 47 2 0 0 0 0.82752 2 9008 8923;9008 21.747 0 1 197350 56378 13373 35435 35453 64825;64826 64826 0.001559992663715093 YKHQAEQI 8 Unmodified _YKHQAEQI_ 0 0 0 L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 508.7618103027344 2 508.761623 1015.50869 0.22607 0.00011502 -0.011904 -6.0565E-06 0.21417 0.00010896 508.76160309885614 45.828 0.70232 49.586 49.293 49.995 3.7579 89 50 2 0 0 0 0.82752 1 8908 8908 15.847 0 1 260920 56379 13373 35435 35453 64827 64827 0.001559992663715093 YKHQAEQI 8 Unmodified _YKHQAEQI_ 0 0 0 L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense L1MEg_dup2146|chr2:171141431-171142881:+|2.0678831808721485|0.0116726135150761|7.47|150.0|43|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 508.21173095703125 2 508.761623 1015.50869 0.22607 0.00011502 -0.011904 -6.0565E-06 0.21417 0.00010896 508.76160309885614 45.828 0.70232 49.586 49.293 49.995 3.7579 89 50 2 0 0 0 0.72333 1 8861 8861 10.824 10.824 1 260920 56380 13373 35435 35453 64828 64828 0.001559992663715093 YKHVLKQPF 9 Unmodified _YKHVLKQPF_ 0 0 0 REV__L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|29|2|sense REV__L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|29|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 580.8556518554688 2 580.334759 1158.65496 0.55825 0.00032397 -0.18155 -0.00010536 0.3767 0.00021861 580.334545704312 59.789 1.0535 63.269 62.841 63.894 3.4801 245 77 4 0 0 0 0.46869 2 13322 13322;13347 3.9444 0.66309 1 1664000 + 56381 26356 35436 35454 64829;64830 64829 0.08198301502284266 YKHVLKQPF 9 Unmodified _YKHVLKQPF_ 0 0 0 REV__L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|29|2|sense REV__L1MB8_dup12336|chr13:45171616-45173075:-|1.4153979491591415|0.0229513060385045|5.95|151.0|29|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 580.8560180664062 2 580.334759 1158.65496 0.55671 0.00032308 -0.12898 -7.4853E-05 0.42773 0.00024823 580.3345895145075 59.747 1.0155 63.234 62.805 63.821 3.4868 247 80 4 0 0 0 0.46869 1 13303 13303 3.9444 0.66309 1 1630800 + 56382 26356 35436 35454 64831 64831 0.08198301502284266 YKICCRYIY 9 Unmodified _YKICCRYIY_ 0 0 0 L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|266|2|anti-sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|266|2|anti-sense L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|266|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 612.7988891601562 2 612.798837 1223.58312 0.31083 0.00019047 -0.54293 -0.0003327 -0.2321 -0.00014223 612.7982873260779 51.296 1.0377 54.889 54.477 55.515 3.5933 106 51 3 0 0 0 0.41259 2 11252 11252;11445 7.2892 0 1 318790 56383 9476 35437 35455 64832;64833 64832 -0.01972697238102228 YKIEVWFY 8 Unmodified _YKIEVWFY_ 0 0 0 L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|94|3|anti-sense L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|94|3|anti-sense L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|94|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 574.2946166992188 2 574.294768 1146.57498 0.4334 0.0002489 0.20538 0.00011795 0.63878 0.00036685 574.2948920368186 77.417 0.29071 80.939 80.88 81.171 3.5221 55 22 3 0 0 0 0.72333 1 18421 18421 7.9102 0 1 354020 56384 10099 35438 35456 64834 64834 0.007558151084367637 YKIMLPVK 8 Unmodified _YKIMLPVK_ 0 0 0 L1MB2_dup2556|chr5:131402381-131403278:+|1.0206275901859907|0.0162280812318536|5.97|150.0|47|2|anti-sense L1MB2_dup2556|chr5:131402381-131403278:+|1.0206275901859907|0.0162280812318536|5.97|150.0|47|2|anti-sense L1MB2_dup2556|chr5:131402381-131403278:+|1.0206275901859907|0.0162280812318536|5.97|150.0|47|2|anti-sense MSMS UPN48_class_I_Rep_2 6 496.3039855957031 2 496.304081 990.59361 NaN NaN NaN NaN NaN NaN NaN 87.528 1 91.256 90.756 91.756 3.7279 0 0 0 0.40746 1 20830 20830 0.69038 0 1 56385 10226 35439 35457 64835 64835 0.0979365347861858 YKIRCVLM 8 Unmodified _YKIRCVLM_ 0 0 0 ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron;ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|3|intron;ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron MULTI-SECPEP UPN47_class_I_Rep_1 2 513.2874145507812 2 513.285366 1024.55618 0.21007 0.00010783 -0.30372 -0.00015589 -0.093642 -4.8065E-05 513.78568134097 67.16 0.4621 70.521 70.347 70.809 3.3611 45 37 3 0 0 0 0.72333 1 16163 16163 0 0 1 78844 56386 2299 35440 35458 64836 64836 0.044882389413487545 YKIRCVLM 8 Unmodified _YKIRCVLM_ 0 0 0 ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron;ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|3|intron;ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron MULTI-MATCH UPN47_class_I_Rep_2 3 2 513.285366 1024.55618 0.046192 2.371E-05 1.4162 0.00072693 1.4624 0.00075064 513.2870901595483 67.3 0.19228 70.563 70.456 70.648 3.2636 0.023043 3.8837E-05 NaN 0 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 81644 56387 2299 35440 35458 0.044882389413487545 YKIRCVLM 8 Unmodified _YKIRCVLM_ 0 0 0 ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron;ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|3|intron;ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron ENSG00000119820.11,YIPF4,chr2,+,I5.1,32301496,32305488|30|9.32|1|intron MULTI-MATCH UPN47_class_I_Rep_3 4 2 513.285366 1024.55618 0.26951 0.00013833 2.0253 0.0010396 2.2948 0.0011779 513.2869456734348 67.345 0.38022 70.536 70.271 70.651 3.1914 -0.0039675 0.0006641 NaN 0 42 27 2 NaN NaN NaN NaN 0 NaN NaN 0 83820 56388 2299 35440 35458 0.044882389413487545 YKIRKTSTT 9 Unmodified _YKIRKTSTT_ 0 0 0 L1M4a2_dup186|chr2:32421404-32422420:-|1.4785935068629694|0.0994729138687167|3.89|151.0|16|2|sense L1M4a2_dup186|chr2:32421404-32422420:-|1.4785935068629694|0.0994729138687167|3.89|151.0|16|2|sense L1M4a2_dup186|chr2:32421404-32422420:-|1.4785935068629694|0.0994729138687167|3.89|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 548.8350219726562 2 549.319306 1096.62406 NaN NaN NaN NaN NaN NaN NaN 22.479 1 22.479 21.979 22.979 0 0 0 0 0.39428 1 2675 2675 2.0598 0.57785 1 56389 8973 35441 35459 64837 64837 0.07961103397360603 YKKAREVS 8 Unmodified _YKKAREVS_ 0 0 0 REV__ENSG00000165092|ENST00000297785|ALDH1A1 REV__ENSG00000165092|ENST00000297785|ALDH1A1 MSMS UPN46_class_I_Rep_3 1 490.78204345703125 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 111.98 1 111.98 111.48 112.48 0 0 0 0 0.40643 1 27633 27633 2.0598 0 1 + 56390 20102 35442 35460 64838 64838 0.054488761630864246 YKKAREVS 8 Unmodified _YKKAREVS_ 0 0 0 REV__ENSG00000165092|ENST00000297785|ALDH1A1 REV__ENSG00000165092|ENST00000297785|ALDH1A1 MSMS UPN47_class_I_Rep_3 4 490.78131103515625 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 113.77 1 117.26 116.76 117.76 3.4963 0 0 0 0.40643 1 27913 27913 2.0598 0 1 + 56391 20102 35442 35460 64839 64839 0.054488761630864246 YKKEREEK 8 Unmodified _YKKEREEK_ 0 0 0 L1MC4_dup3993|chr2:241297309-241297794:+|1.3286086103403931|0.0179959924456294|6.21|151.0|17|3|sense L1MC4_dup3993|chr2:241297309-241297794:+|1.3286086103403931|0.0179959924456294|6.21|151.0|17|3|sense L1MC4_dup3993|chr2:241297309-241297794:+|1.3286086103403931|0.0179959924456294|6.21|151.0|17|3|sense MSMS UPN48_class_I_Rep_2 6 555.3012084960938 2 555.301113 1108.58767 NaN NaN NaN NaN NaN NaN NaN 24.176 1 27.815 27.315 28.315 3.6397 0 0 0 0.40746 1 2766 2766 0.69038 0 1 56392 11495 35443 35461 64840 64840 0.037722265006550515 YKKFMRIL 8 Unmodified _YKKFMRIL_ 0 0 0 MER51-int_dup486|chr17:20195760-20197168:-|1.650749121742512|0.0034331309662757|8.91|151.0|19|1|sense MER51-int_dup486|chr17:20195760-20197168:-|1.650749121742512|0.0034331309662757|8.91|151.0|19|1|sense MER51-int_dup486|chr17:20195760-20197168:-|1.650749121742512|0.0034331309662757|8.91|151.0|19|1|sense MSMS UPN47_class_I_Rep_2 3 549.8294677734375 2 549.828255 1097.64196 NaN NaN NaN NaN NaN NaN NaN 57.142 1 60.434 59.934 60.934 3.2912 0 0 0 0.38547 1 13135 13135 13.508 2.0132 1 56393 16080 35444 35462 64841 64841 0.09704147118532092 YKKGNRPK 8 Unmodified _YKKGNRPK_ 0 0 0 REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|62|2|sense REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|62|2|sense MSMS UPN47_class_I_Rep_1 2 495.79595947265625 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 74.179 1 77.572 77.072 78.072 3.3937 0 0 0 0.40746 1 18247 18247 0.69038 0 1 + 56394 25065 35445 35463 64842 64842 0.08184288636891779 YKKGNRPK 8 Unmodified _YKKGNRPK_ 0 0 0 REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|62|2|sense REV__L1MA3_dup6259|chr11:6582056-6585273:+|1.2343070411986587|0.1728958598248111|2.84|151.0|62|2|sense MSMS UPN47_class_I_Rep_2 3 495.7960510253906 2 495.795801 989.577048 NaN NaN NaN NaN NaN NaN NaN 69.985 1 73.261 72.761 73.761 3.2761 0 0 0 0.40746 1 17025 17025 0.69038 0 1 + 56395 25065 35445 35463 64843 64843 0.08184288636891779 YKKKKKIK 8 Unmodified _YKKKKKIK_ 0 0 0 AluJo_dup1705|chr1:32784009-32784313:-|1.1669281258896425|0.3208647558479477|1.86|151.0|7|2|sense AluJo_dup1705|chr1:32784009-32784313:-|1.1669281258896425|0.3208647558479477|1.86|151.0|7|2|sense AluJo_dup1705|chr1:32784009-32784313:-|1.1669281258896425|0.3208647558479477|1.86|151.0|7|2|sense MSMS UPN46_class_I_Rep_3 1 532.3689575195312 2 532.371144 1062.72774 NaN NaN NaN NaN NaN NaN NaN 98.922 1 98.922 98.422 99.422 0 0 0 0 0.40798 1 24089 24089 0 0 1 56396 90 35446 35464 64844 64844 0.19888055295677987 YKKKKKKKK 9 Unmodified _YKKKKKKKK_ 0 0 0 AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense;L1M3d_dup433|chr15:76465874-76466767:-|1.988328761855096|0.1848264378559382|3.43|151.0|13|2|sense;L1PA4_dup2620|chr4:9619633-9624085:+|3.3484168227827893|0.252215488438552|3.73|150.0|29|1|sense;L1MA4A_dup392|chr1:212054994-212060454:+|9.185274563043498|0.0437562134210628|7.71|151.0|97|2|sense;AluSz6_dup36663|chr15:51920321-51920650:+|1.0227141401479731|0.0209575801242003|5.61|151.0|2|1|sense;L1M3de_dup155|chr6:118869421-118871611:+|1.4781474985084055|0.0160360641098552|6.53|151.0|50|3|sense;AluJo_dup51577|chr12:104471981-104472271:-|1.5430521498431955|0.0049842417122478|8.27|151.0|10|3|sense;L1M2_dup4061|chr7:97889534-97890600:+|1.0227141401479731|0.0655944996112493|3.96|151.0|18|2|sense;AluSx_dup87537|chr15:57097874-57098212:+|1.0597342965058694|0.0272215114634847|5.28|151.0|6|2|sense AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense AluJr_dup13216|chr3:11442619-11442946:+|1.0293890575943176|0.0512187124690367|4.33|151.0|6|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 603.4189453125 2 603.924075 1205.8336 0.63464 0.00038327 -3.6485 -0.0022034 -3.0139 -0.0018201 603.9205262960752 108.14 0.1047 111.67 111.61 111.72 3.5333 12 10 2 0 0 0 0.12551 1 26201 26201 0 0 1 2974300 56397 131 35447 35465 64845 64845 0.2389139114113732 YKKKKKVK 8 Unmodified _YKKKKKVK_ 0 0 0 REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|11|1|sense MSMS UPN48_class_I_Rep_3 7 525.3634033203125 2 525.363319 1048.71209 NaN NaN NaN NaN NaN NaN NaN 69.608 1 73.121 72.621 73.621 3.5128 0 0 0 0.40746 1 16048 16048 0.69038 0 1 + 56398 26548 35448 35466 64846 64846 0.18967768778634309 YKKLAFLLY 9 Unmodified _YKKLAFLLY_ 0 0 0 REV__ENST00000461221.5_1_17:41276046-41277202:-|nuORF REV__ENST00000461221.5_1_17:41276046-41277202:-|nuORF MSMS UPN46_class_I_Rep_3 1 579.852294921875 2 579.84971 1157.68487 NaN NaN NaN NaN NaN NaN NaN 37.503 1 37.503 37.003 38.003 0 0 0 0 0.40038 1 7058 7058 0.6015 0 1 + 56399 22431 35449 35467 64847 64847 0.11233240447631943 YKKMYPIF 8 Unmodified _YKKMYPIF_ 0 0 0 REV__ENSG00000052802|ENST00000261507|MSMO1 REV__ENSG00000052802|ENST00000261507|MSMO1 MSMS UPN46_class_I_Rep_3 1 545.2940063476562 2 545.293714 1088.57287 NaN NaN NaN NaN NaN NaN NaN 27.764 1 27.764 27.264 28.264 0 0 0 0 0.40738 1 4166 4166 0.79363 0 1 + 56400 17682 35450 35468 64848 64848 0.03213063098951352 YKKPDLAL 8 Unmodified _YKKPDLAL_ 0 0 0 REV__ENSG00000101544|ENST00000262198|ADNP2 REV__ENSG00000101544|ENST00000262198|ADNP2 MULTI-MSMS UPN46_class_I_Rep_3 1 474.2821044921875 2 474.28166 946.548768 -0.16851 -7.9919E-05 1.7512 0.00083055 1.5827 0.00075063 474.2823232632321 22.827 0.13112 22.827 22.731 22.862 0 24 14 3 0 0 0 0.82752 1 2765 2765 2.3027 0.4585 1 96778 + 56401 18166 35451 35469 64849 64849 0.07335545936939525 YKKQIYFSQSG 11 Unmodified _YKKQIYFSQSG_ 0 0 0 MLT1A1_dup971|chr2:201123295-201123675:-|1.6648720564097634|0.177406758316871|3.23|151.0|24|3|anti-sense MLT1A1_dup971|chr2:201123295-201123675:-|1.6648720564097634|0.177406758316871|3.23|151.0|24|3|anti-sense MLT1A1_dup971|chr2:201123295-201123675:-|1.6648720564097634|0.177406758316871|3.23|151.0|24|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 450.2344970703125 3 450.23471 1347.6823 0.0050283 2.2639E-06 -0.41225 -0.00018561 -0.40722 -0.00018335 450.2343816992863 100.08 0.58571 103.69 103.43 104.02 3.6084 154 74 3 0 0 0 0.68081 1 24168 24168 0.45452 0 1 386270 56402 16267 35452 35470 64850 64850 0.022367402519876123 YKKQLNLF 8 Unmodified _YKKQLNLF_ 0 0 0 REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF MSMS UPN48_class_I_Rep_3 7 527.3070678710938 2 527.30821 1052.60187 NaN NaN NaN NaN NaN NaN NaN 100.08 1 103.93 103.43 104.43 3.8537 0 0 0 0.40625 1 23700 23700 2.3027 0 1 + 56403 19805 35453 35471 64851 64851 0.07766923719600527 YKKRCRKR 8 Unmodified _YKKRCRKR_ 0 0 0 REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|9|1|sense REV__L1MA2_dup6612|chr15:58660996-58662342:-|5.4690696764448665|0.0391040078563705|7.13|151.0|9|1|sense MSMS UPN47_class_I_Rep_1 2 569.342529296875 2 569.342926 1136.6713 NaN NaN NaN NaN NaN NaN NaN 13.439 1 16.896 16.396 17.396 3.457 0 0 0 0.40798 1 330 330 0 0 1 + 56404 24932 35454 35472 64852 64852 0.10843104187370045 YKKRKHKQ 8 Unmodified _YKKRKHKQ_ 0 0 0 REV__L1MB3_dup14308|chr16:53069304-53070553:-|1.9429282084970667|0.0318472270528968|5.93|151.0|3|1|sense REV__L1MB3_dup14308|chr16:53069304-53070553:-|1.9429282084970667|0.0318472270528968|5.93|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 558.344482421875 2 558.343449 1114.67235 NaN NaN NaN NaN NaN NaN NaN 24.515 1 28.082 27.582 28.582 3.5667 0 0 0 0.40746 1 2718 2718 0.69038 0 1 + 56405 25822 35455 35473 64853 64853 0.1195964182793432 YKKRKQQH 8 Unmodified _YKKRKQQH_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MSMS UPN46_class_I_Rep_3 1 558.3248901367188 2 558.325257 1114.63596 NaN NaN NaN NaN NaN NaN NaN 74.605 1 74.605 74.105 75.105 0 0 0 0 0.40746 1 17313 17313 0.69038 0 1 56406 2012 35456 35474 64854 64854 0.08322764931222082 YKKRKRRKR 9 Unmodified _YKKRKRRKR_ 0 0 0 REV__L1MCa_dup7171|chr20:3338127-3338648:-|1.5714630896241404|0.0668304487331949|4.56|150.0|5|2|sense REV__L1MCa_dup7171|chr20:3338127-3338648:-|1.5714630896241404|0.0668304487331949|4.56|150.0|5|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 440.79949951171875 3 440.29334 1317.85819 -0.42523 -0.00018722 -2.724 -0.0011994 -3.1493 -0.0013866 440.6263685103185 60.17 0.059528 63.335 63.29 63.35 3.1651 5 3 2 0 0 0 0.12546 1 14104 14104 0.23584 0.076522 1 44586 + 56407 27226 35457 35475 64855 64855 0.21197464067245164 YKKRKTNR 8 Unmodified _YKKRKTNR_ 0 0 0 L1ME3A_dup5109|chr5:87301805-87302504:-|1.15055340766647|0.0276544831226302|5.38|151.0|20|3|sense L1ME3A_dup5109|chr5:87301805-87302504:-|1.15055340766647|0.0276544831226302|5.38|151.0|20|3|sense L1ME3A_dup5109|chr5:87301805-87302504:-|1.15055340766647|0.0276544831226302|5.38|151.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 547.3319091796875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 102.45 1 106.24 105.74 106.74 3.7888 0 0 0 0.40753 1 25218 25218 0.6015 0 1 56408 12670 35458 35476 64856 64856 0.10899051448268438 YKKTIEVF 8 Unmodified _YKKTIEVF_ 0 0 0 REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF MSMS UPN48_class_I_Rep_2 6 514.2950439453125 2 514.294768 1026.57498 NaN NaN NaN NaN NaN NaN NaN 69.5 1 73.022 72.522 73.522 3.5216 0 0 0 0.40581 1 16104 16104 2.8892 0 1 + 56409 18407 35459 35477 64857 64857 0.06275815108415372 YKKYILYM 8 Unmodified _YKKYILYM_ 0 0 0 L1M4_dup13254|chr10:92852076-92853895:+|2.220816410183522|0.026546973827159|6.39|151.0|36|2|sense L1M4_dup13254|chr10:92852076-92853895:+|2.220816410183522|0.026546973827159|6.39|151.0|36|2|sense L1M4_dup13254|chr10:92852076-92853895:+|2.220816410183522|0.026546973827159|6.39|151.0|36|2|sense MSMS UPN48_class_I_Rep_1 5 561.3071899414062 2 561.306821 1120.59909 NaN NaN NaN NaN NaN NaN NaN 28.823 1 32.373 31.873 32.873 3.5499 0 0 0 0.40738 1 3915 3915 0.79363 0 1 56410 8836 35460 35478 64858 64858 0.043613322704231905 YKKYLHPTV 9 Unmodified _YKKYLHPTV_ 0 0 0 REV__AluJb_dup7968|chr1:155347118-155347435:+|1.048308177767424|0.3204654155914331|1.71|151.0|7|2|sense REV__AluJb_dup7968|chr1:155347118-155347435:+|1.048308177767424|0.3204654155914331|1.71|151.0|7|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 574.7623901367188 2 574.826766 1147.63898 0.38035 0.00021863 4.1318 0.0023751 4.5121 0.0025937 574.829197983905 67.151 0.11275 70.414 70.324 70.437 3.2636 11 8 2 0 0 0 0.12444 1 16179 16179 2.0598 0.40713 1 48850 + 56411 16966 35461 35479 64859 64859 0.07106595265349824 YKLEQVITL 9 Unmodified _YKLEQVITL_ 0 0 0 ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-4|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 MSMS UPN48_class_I_Rep_1 5 553.8267211914062 2 553.826432 1105.63831 NaN NaN NaN NaN NaN NaN NaN 66.86 1 70.311 69.811 70.811 3.4516 0 0 0 0.38916 1 15320 15320 3.2813 0.54611 1 56412 5644 35462 35480 64860 64860 0.08971755825655237 YKLFLFLF 8 Unmodified _YKLFLFLF_ 0 0 0 Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|76|3|anti-sense Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|76|3|anti-sense Tigger3b_dup2644|chr6:127299167-127300134:+|1.2757844877324882|0.1382341305000325|3.21|151.0|76|3|anti-sense MSMS UPN47_class_I_Rep_1 2 545.8203125 2 545.820421 1089.62629 NaN NaN NaN NaN NaN NaN NaN 114.5 1 118.08 117.58 118.58 3.5809 0 0 0 0.40798 1 28295 28295 0 0 1 56413 33378 35463 35481 64861 64861 0.08506183873100781 YKLFRAVP 8 Unmodified _YKLFRAVP_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS UPN47_class_I_Rep_1 2 497.2979736328125 2 497.297645 992.580737 0.1418 7.0516E-05 -0.019172 -9.5343E-06 0.12263 6.0982E-05 497.29757494802095 65.075 0.4193 68.431 68.352 68.771 3.3557 43 27 2 0 0 0 0.82752 1 15591 15591 2.5775 0 1 99174 + 56414 19268 35464 35482 64862 64862 0.08414958410742202 YKLFRAVP 8 Unmodified _YKLFRAVP_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS UPN47_class_I_Rep_2 3 497.2975158691406 2 497.297645 992.580737 0.18629 9.264E-05 -0.15726 -7.8204E-05 0.029028 1.4436E-05 497.297501287867 64.695 1.7443 67.951 67.398 69.142 3.2556 186 127 2 0 0 0 0.82752 1 15680 15680 5.2307 0 1 261150 + 56415 19268 35464 35482 64863 64863 0.08414958410742202 YKLLIEHH 8 Unmodified _YKLLIEHH_ 0 0 0 REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense MSMS UPN47_class_I_Rep_2 3 526.7975463867188 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.475 1 23.882 23.382 24.382 3.4074 0 0 0 0.40746 1 2130 2130 0.69038 0 1 + 56416 30606 35465 35483 64864 64864 0.05773753059793307 YKLLIEHH 8 Unmodified _YKLLIEHH_ 0 0 0 REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 526.7974243164062 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.794 1 24.143 23.643 24.643 3.3496 0 0 0 0.40746 1 2212 2212 0.69038 0 1 + 56417 30606 35465 35483 64865 64865 0.05773753059793307 YKLLIEHH 8 Unmodified _YKLLIEHH_ 0 0 0 REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 527.2492065429688 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 22.837 1 26.187 25.687 26.687 3.3503 0 0 0 0.40746 1 2800 2800 0.69038 0 1 + 56418 30606 35465 35483 64866 64866 0.05773753059793307 YKLLIEHH 8 Unmodified _YKLLIEHH_ 0 0 0 REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense REV__L1PB4_dup5492|chr12:9982650-9983256:-|7.123610393163293|0.4926364078459161|3.85|151.0|10|2|sense MSMS UPN48_class_I_Rep_3 7 526.3150634765625 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 22.233 1 25.947 25.447 26.447 3.7144 0 0 0 0.40746 1 2237 2237 0.69038 0 1 + 56419 30606 35465 35483 64867 64867 0.05773753059793307 YKLLLLLLWFI 11 Unmodified _YKLLLLLLWFI_ 0 0 0 REV__L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|58|3|anti-sense REV__L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|58|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 478.9745788574219 3 478.97562 1433.90503 0.22069 0.0001057 -1.6193 -0.00077558 -1.3986 -0.00066988 478.97491389500465 47.772 0.10354 47.772 47.731 47.835 0 15 11 2 0 0 0 0.68478 1 9912 9912 0.094841 0 1 209900 + 56420 28580 35466 35484 64868 64868 0.2054346605518731 YKLLLLLLWFI 11 Unmodified _YKLLLLLLWFI_ 0 0 0 REV__L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|58|3|anti-sense REV__L1MEd_dup6755|chr5:55445845-55446791:-|1.969918728157432|0.2967720970887212|2.73|151.0|58|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 3 478.97562 1433.90503 -0.10453 -5.0069E-05 -2.0728 -0.00099282 -2.1773 -0.0010429 478.97458334287415 44.389 0.2224 47.745 47.677 47.9 3.3556 -0.013687 -0.00015558 NaN 0.094841 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 35964 + 56421 28580 35466 35484 0.2054346605518731 YKLQFIVT 8 Unmodified _YKLQFIVT_ 0 0 0 L1MEg_dup2084|chr2:159787237-159787834:-|1.2355833266108889|0.1163553804129722|3.41|151.0|21|3|sense L1MEg_dup2084|chr2:159787237-159787834:-|1.2355833266108889|0.1163553804129722|3.41|151.0|21|3|sense L1MEg_dup2084|chr2:159787237-159787834:-|1.2355833266108889|0.1163553804129722|3.41|151.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 506.29693603515625 2 506.29731 1010.58007 NaN NaN NaN NaN NaN NaN NaN 65.28 1 68.536 68.036 69.036 3.2556 0 0 0 0.37681 1 15609 15609 15.847 0 1 56422 13372 35467 35485 64869 64869 0.07520118971035572 YKLQKPVHK 9 Unmodified _YKLQKPVHK_ 0 0 0 L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.8484497070312 2 570.848033 1139.68151 0.48484 0.00027677 0.25798 0.00014727 0.74282 0.00042404 570.8480359409431 108.68 0.44345 112.32 112.17 112.62 3.6355 147 45 5 0 0 0 0.33654 1 26694 26694 11.64 1.5664 1 156500000 56423 12429 35468 35486 64870 64870 0.11725990393597385 YKLQKPVHK 9 Unmodified _YKLQKPVHK_ 0 0 0 L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.8485717773438 2 570.848033 1139.68151 0.50517 0.00028838 0.28004 0.00015986 0.78521 0.00044824 570.8481038588611 108.68 0.62305 112.22 112.09 112.72 3.5382 238 70 4 0 0 0 0.26948 1 26622 26622 15.847 1.9411 1 124580000 56424 12429 35468 35486 64871 64871 0.11725990393597385 YKLQKPVHK 9 Unmodified _YKLQKPVHK_ 0 0 0 L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 570.848033 1139.68151 0.48457 0.00027661 0.060053 3.4281E-05 0.54462 0.0003109 570.8479856809416 108.75 0.52178 112.42 112.29 112.81 3.6746 0.11473 -0.0001421 NaN 15.847 204 56 5 NaN NaN NaN NaN 0 NaN NaN 0 87394000 56425 12429 35468 35486 0.11725990393597385 YKLQKPVHK 9 Unmodified _YKLQKPVHK_ 0 0 0 L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense L1ME1_dup6627|chr3:130981043-130982306:-|1.9863633753185792|0.0572349026506316|5.12|151.0|14|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 570.848033 1139.68151 0.46473 0.00026529 0.36946 0.00021091 0.83419 0.00047619 570.8481395582597 108.67 0.52938 112.34 112.19 112.72 3.6751 0.032899 0.00021115 NaN 15.847 146 57 4 NaN NaN NaN NaN 0 NaN NaN 0 102170000 56426 12429 35468 35486 0.11725990393597385 YKLRKAIFFG 10 Unmodified _YKLRKAIFFG_ 0 0 0 nc|ENSG00000167291|Q8TBP0-3|TBC1D16;nc|ENSG00000167291|Q8TBP0-2|TBC1D16;ENSG00000167291|ENST00000310924|TBC1D16 nc|ENSG00000167291|Q8TBP0-3|TBC1D16 nc|ENSG00000167291|Q8TBP0-3|TBC1D16 MSMS UPN46_class_I_Rep_3 1 621.8713989257812 2 621.871508 1241.72846 NaN NaN NaN NaN NaN NaN NaN 20.518 1 20.518 20.018 21.018 0 0 0 0 0.53105 1 2148 2148 0 0 1 56427 4297 35469 35487 64872 64872 0.1172684994469364 YKLRLQPLL 9 Unmodified _YKLRLQPLL_ 0 0 0 ENST00000252512.13_1_8:21862810-21862942:+|nuORF ENST00000252512.13_1_8:21862810-21862942:+|nuORF ENST00000252512.13_1_8:21862810-21862942:+|nuORF MSMS UPN47_class_I_Rep_1 2 572.3637084960938 2 572.366059 1142.71756 NaN NaN NaN NaN NaN NaN NaN 106.33 1 110.04 109.54 110.54 3.7088 0 0 0 0.39428 1 26073 26073 2.0598 0 1 56428 5918 35470 35488 64873 64873 0.15191447570464334 YKLRYKRCVLV 11 Unmodified _YKLRYKRCVLV_ 0 0 0 REV__L1MC4_dup8237|chr5:137927141-137927720:+|2.267424807598861|0.0585760607376013|5.27|150.0|25|3|sense REV__L1MC4_dup8237|chr5:137927141-137927720:+|2.267424807598861|0.0585760607376013|5.27|150.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 480.95501708984375 3 480.955113 1439.84351 -0.21191 -0.00010192 -0.65237 -0.00031376 -0.86429 -0.00041568 480.9547614559246 15.177 0.81332 18.564 18.389 19.202 3.3864 211 92 3 0 0 0 0.68081 1 789 789 0.45452 0 1 148840 + 56429 26945 35471 35489 64874 64874 0.1411821108422373 YKLTRTSY 8 Unmodified _YKLTRTSY_ 0 0 0 REV__L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|29|3|sense REV__L1MEc_dup3295|chr2:230788199-230789403:-|2.091241729392752|0.0700398034986646|4.9|151.0|29|3|sense MSMS UPN46_class_I_Rep_3 1 516.2814331054688 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 45.353 1 45.353 44.853 45.853 0 0 0 0 0.40604 1 9214 9214 2.5775 0 1 + 56430 28440 35472 35490 64875 64875 0.030694564432451443 YKLVERQK 8 Unmodified _YKLVERQK_ 0 0 0 HAL1_dup18271|chr14:49823456-49823887:+|1.425040173035084|0.0704353646154235|4.34|151.0|16|3|sense HAL1_dup18271|chr14:49823456-49823887:+|1.425040173035084|0.0704353646154235|4.34|151.0|16|3|sense HAL1_dup18271|chr14:49823456-49823887:+|1.425040173035084|0.0704353646154235|4.34|151.0|16|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.3162841796875 2 532.316566 1062.61858 0.51347 0.00027333 -1.1685 -0.000622 -0.655 -0.00034867 532.3161050751414 110.8 0.028992 114.46 114.45 114.48 3.6654 4 2 2 0 0 0 0.82752 1 26289 26289 0.69038 0 1 138480 56431 7836 35473 35491 64876 64876 0.0897742460556401 YKLVRSLLL 9 Unmodified _YKLVRSLLL_ 0 0 0 REV__L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|110|3|anti-sense REV__L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|110|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.8610229492188 2 552.860609 1103.70667 0.27615 0.00015267 0.30674 0.00016958 0.58289 0.00032226 552.8606855861567 55.953 0.4765 59.509 59.144 59.621 3.5554 78 34 3 0 0 0 0.31407 1 11862 11862 13.042 0 1 750270 + 56432 27549 35474 35492 64877 64877 0.1589604519617751 YKMFRPKK 8 Unmodified _YKMFRPKK_ 0 0 0 REV__ENST00000580335.1_1_18:67624250-67624304:-|nuORF REV__ENST00000580335.1_1_18:67624250-67624304:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 549.3179931640625 2 549.318054 1096.62156 0.49112 0.00026978 0.016287 8.9466E-06 0.5074 0.00027873 549.3180393797746 92.109 0.33313 95.512 95.366 95.699 3.4034 57 46 2 0 0 0 0.82752 1 23041 23041 0.69038 0 1 121850 + 56433 23122 35475 35493 64878 64878 0.07710976458724872 YKNEIHAL 8 Unmodified _YKNEIHAL_ 0 0 0 nc|ENSG00000147485|A1KZ92-2|PXDNL;ENSG00000147485|ENST00000356297|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL nc|ENSG00000147485|A1KZ92-2|PXDNL MSMS UPN46_class_I_Rep_3 1 494.265625 2 494.266542 986.51853 NaN NaN NaN NaN NaN NaN NaN 44.13 1 44.13 43.63 44.63 0 0 0 0 0.3903 1 8867 8867 11.64 1.5664 1 56434 3477 35476 35494 64879 64879 0.024731872717325132 YKNFVAKK 8 Unmodified _YKNFVAKK_ 0 0 0 nc|ENSG00000022267|Q13642-1|FHL1;ENSG00000022267|ENST00000370683|FHL1;nc|ENSG00000022267|Q13642-4|FHL1;nc|ENSG00000022267|Q13642|FHL1 nc|ENSG00000022267|Q13642-1|FHL1 nc|ENSG00000022267|Q13642-1|FHL1 MSMS UPN48_class_I_Rep_1 5 499.2928466796875 2 499.295102 996.575651 NaN NaN NaN NaN NaN NaN NaN 90.429 1 94.055 93.555 94.555 3.626 0 0 0 0.40625 1 21732 21732 2.3027 0 1 56435 809 35477 35495 64880 64880 0.07722654548126684 YKNIAIQF 8 Unmodified _YKNIAIQF_ 0 0 0 REV__L1M4b_dup538|chr2:138535558-138537145:-|1.3202578073707396|0.0136083797604754|6.6|151.0|52|3|sense REV__L1M4b_dup538|chr2:138535558-138537145:-|1.3202578073707396|0.0136083797604754|6.6|151.0|52|3|sense MSMS UPN48_class_I_Rep_3 7 498.7793273925781 2 498.779285 995.544017 NaN NaN NaN NaN NaN NaN NaN 50.823 1 54.433 53.933 54.933 3.6105 0 0 0 0.28616 1 10352 10352 34.102 0 1 + 56436 24562 35478 35496 64881 64881 0.04606661794173306 YKNIMVFLV 9 Unmodified _YKNIMVFLV_ 0 0 0 REV__ENST00000557897.1_1_15:88616127-88669565:-|nuORF REV__ENST00000557897.1_1_15:88616127-88669565:-|nuORF MSMS UPN48_class_I_Rep_2 6 563.822021484375 2 563.820095 1125.62564 NaN NaN NaN NaN NaN NaN NaN 45.748 1 49.506 49.006 50.006 3.7579 0 0 0 0.39518 1 8863 8863 1.8442 0.19162 1 + 56437 19348 35479 35497 64882 64882 0.0678502116177242 YKNKKKKKKE 10 Unmodified _YKNKKKKKKE_ 0 0 0 REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|122|2|sense REV__L1PA15_dup2635|chr5:94102114-94107080:+|1.4524315706492943|0.0190161112430139|6.26|151.0|122|2|sense MSMS UPN47_class_I_Rep_2 3 441.2973937988281 3 441.281995 1320.82415 NaN NaN NaN NaN NaN NaN NaN 69.38 1 72.656 72.156 73.156 3.2761 0 0 0 0.53105 1 16845 16845 0.15932 0 1 + 56438 29221 35480 35498 64883 64883 0.17657578064972768 YKNPLINQL 9 Unmodified _YKNPLINQL_ 0 0 0 REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|27|1|sense REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|27|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 551.8164672851562 2 551.816399 1101.61824 0.57471 0.00031713 -0.36631 -0.00020214 0.2084 0.000115 551.8162003090239 59.316 0.95636 62.803 62.223 63.18 3.4868 133 64 3 0 0 0 0.01718 2 12995 12995;13035 65.235 0 1 342830 + 56439 30403 35481 35499 64884;64885 64884 0.07150004885693306 YKNPLINQL 9 Unmodified _YKNPLINQL_ 0 0 0 REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|27|1|sense REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|27|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 551.8159790039062 2 551.816399 1101.61824 0.35692 0.00019695 -0.2349 -0.00012962 0.12202 6.7332E-05 551.8162974277647 59.038 1.0892 62.561 62.157 63.246 3.5231 117 77 2 0 0 0 0.047711 1 12923 12923 49.933 0 1 285080 + 56440 30403 35481 35499 64886 64886 0.07150004885693306 YKNPLINQL 9 Unmodified _YKNPLINQL_ 0 0 0 REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|27|1|sense REV__L1PB1_dup4179|chr5:81269746-81273081:+|1.331518306532235|0.1109019941542256|3.59|150.0|27|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 552.2789916992188 2 551.816399 1101.61824 0.34425 0.00018996 -1.9498 -0.001076 -1.6056 -0.00088599 552.3153565397613 58.582 0.095512 62.105 62.061 62.157 3.5231 6 4 2 0 0 0 0.118 1 12719 12719 10.074 0 1 104750 + 56441 30403 35481 35499 64887 64887 0.07150004885693306 YKNSARFRS 9 Unmodified _YKNSARFRS_ 0 0 0 ENST00000331113.8_1_7:120381633-120387745:+|nuORF ENST00000331113.8_1_7:120381633-120387745:+|nuORF ENST00000331113.8_1_7:120381633-120387745:+|nuORF MSMS UPN48_class_I_Rep_2 6 564.7986450195312 2 564.799072 1127.58359 NaN NaN NaN NaN NaN NaN NaN 29.058 1 32.69 32.19 33.19 3.6316 0 0 0 0.39518 1 4080 4080 1.8442 0 1 56442 6186 35482 35500 64888 64888 0.024901817976115126 YKNVYVRMF 9 Unmodified _YKNVYVRMF_ 0 0 0 L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|14|1|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|14|1|sense L1ME2_dup1383|chr2:55037707-55039079:+|1.5862974358453727|0.0370754215635785|5.42|151.0|14|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.7851257324219 3 407.214593 1218.62195 -0.13076 -5.3248E-05 2.5205 0.0010264 2.3897 0.00097312 407.2154849071808 33.029 0.27149 33.029 32.81 33.081 0 25 18 2 0 0 0 0.12429 1 5670 5670 2.7352 0 1 56179 56443 12478 35483 35501 64889 64889 0.021383513878845406 YKNWGVSHK 9 Unmodified _YKNWGVSHK_ 0 0 0 MER102b_dup1860|chr8:125307827-125308140:+|1.2063075885804515|0.113274286670544|3.41|151.0|7|3|sense MER102b_dup1860|chr8:125307827-125308140:+|1.2063075885804515|0.113274286670544|3.41|151.0|7|3|sense MER102b_dup1860|chr8:125307827-125308140:+|1.2063075885804515|0.113274286670544|3.41|151.0|7|3|sense MSMS UPN46_class_I_Rep_3 1 559.7886962890625 2 559.790715 1117.56688 NaN NaN NaN NaN NaN NaN NaN 17.09 1 17.09 16.59 17.59 0 0 0 0 0.3967 1 1290 1290 1.4819 0.28856 1 56444 15757 35484 35502 64890 64890 0.01279680911648029 YKPHHKAN 8 Unmodified _YKPHHKAN_ 0 0 0 REV__ENSG00000152611|ENST00000651391|CAPSL REV__ENSG00000152611|ENST00000651391|CAPSL MSMS UPN48_class_I_Rep_1 5 497.7664794921875 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 64.573 1 68.028 67.528 68.528 3.4541 0 0 0 0.40625 1 14629 14629 2.3027 0 1 + 56445 19689 35485 35503 64891 64891 0.017431425686936564 YKPLEQYY 8 Unmodified _YKPLEQYY_ 0 0 0 REV__nc|ENSG00000137474|Q13402-5|MYO7A REV__nc|ENSG00000137474|Q13402-5|MYO7A MSMS UPN47_class_I_Rep_1 2 552.2743530273438 2 552.274032 1102.53351 NaN NaN NaN NaN NaN NaN NaN 71.4 1 74.775 74.275 75.275 3.3751 0 0 0 0.40501 1 17406 17406 3.9444 0 1 + 56446 19231 35486 35504 64892 64892 -0.013653656509177381 YKPNKARRT 9 Unmodified _YKPNKARRT_ 0 0 0 REV__L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|32|1|sense REV__L1PA6_dup4690|chr12:45391884-45397988:+|1.418830982370414|0.0698190985588538|4.34|151.0|32|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 567.330322265625 2 567.330539 1132.64652 0.41842 0.00023738 -0.70549 -0.00040025 -0.28707 -0.00016286 567.3300186543671 81.645 0.89778 85.158 84.718 85.615 3.5122 160 100 2 0 0 0 0.48643 1 20403 20403 2.0598 0.40713 1 224520 + 56447 29915 35487 35505 64893 64893 0.08550747585650242 YKPNVELEL 9 Unmodified _YKPNVELEL_ 0 0 0 REV__Tigger1_dup335|chr1:84560152-84562002:+|3.521427164001026|0.3542306298226697|3.31|151.0|55|3|sense REV__Tigger1_dup335|chr1:84560152-84562002:+|3.521427164001026|0.3542306298226697|3.31|151.0|55|3|sense MSMS UPN48_class_I_Rep_3 7 552.8002319335938 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 57.185 1 60.728 60.228 61.228 3.5427 0 0 0 0.38073 1 12279 12279 5.2969 0.066215 1 + 56448 32422 35488 35506 64894 64894 0.03862592411906007 YKPPYVWYH 9 Unmodified _YKPPYVWYH_ 0 0 0 REV__L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|133|3|sense REV__L1PA11_dup2133|chr9:5659841-5664127:-|1.21862141259182|0.0767201364822684|3.99|151.0|133|3|sense MSMS UPN48_class_I_Rep_3 7 626.8104858398438 2 626.811116 1251.60768 NaN NaN NaN NaN NaN NaN NaN 36.719 1 40.382 39.882 40.882 3.663 0 0 0 0.40038 1 6107 6107 0.6015 0 1 + 56449 29011 35489 35507 64895 64895 -0.008059777687321912 YKPQKQIK 8 Unmodified _YKPQKQIK_ 0 0 0 REV__L1MA8_dup1435|chr2:230450356-230450975:-|1.2646860133437428|0.070611338222352|4.16|151.0|7|2|sense REV__L1MA8_dup1435|chr2:230450356-230450975:-|1.2646860133437428|0.070611338222352|4.16|151.0|7|2|sense MSMS UPN48_class_I_Rep_1 5 516.7972412109375 2 516.813659 1031.61277 NaN NaN NaN NaN NaN NaN NaN 31.587 1 35.121 34.621 35.621 3.5342 0 0 0 0.40625 1 4691 4691 2.3027 0 1 + 56450 25531 35490 35508 64896 64896 0.09822326093899392 YKPSIHYPI 9 Unmodified _YKPSIHYPI_ 0 0 0 REV__L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|18|2|sense REV__L1MA3_dup2057|chr3:195364590-195365411:+|1.7337404478461238|0.0070353539054834|7.95|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 559.3035278320312 2 559.305667 1116.59678 NaN NaN NaN NaN NaN NaN NaN 13.83 1 17.287 16.787 17.787 3.457 0 0 0 0.40038 1 424 424 0.6015 0 1 + 56451 24997 35491 35509 64897 64897 0.04314619856972968 YKQLKQIYK 9 Unmodified _YKQLKQIYK_ 0 0 0 L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 606.8629150390625 2 606.360973 1210.70739 0.50984 0.00030915 0.11766 7.1343E-05 0.6275 0.00038049 606.3603758164323 109.55 0.38722 113.08 112.94 113.32 3.5347 121 53 3 0 0 0 0.46869 1 26952 26952 3.9444 0 1 835590 56452 14719 35492 35510 64898 64898 0.11046839845221257 YKQLKQIYK 9 Unmodified _YKQLKQIYK_ 0 0 0 L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 606.3613891601562 2 606.360973 1210.70739 0.41771 0.00025328 0.24462 0.00014833 0.66233 0.00040161 606.360929065973 108.65 0.63891 112.28 112.17 112.81 3.6321 144 75 2 0 0 0 0.46869 1 26326 26326 3.9444 0 1 25210000 56453 14719 35492 35510 64899 64899 0.11046839845221257 YKQLKQIYK 9 Unmodified _YKQLKQIYK_ 0 0 0 L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense L1PA7_dup11300|chr14:35837887-35841311:-|1.0957360757031367|0.0221847182504059|5.63|150.0|20|1|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 606.360973 1210.70739 0.41768 0.00025327 0.082342 4.9929E-05 0.50002 0.00030319 606.3608856328391 109.28 0.095177 112.91 112.85 112.94 3.6321 -0.077154 0.00014345 NaN 3.9444 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 976990 56454 14719 35492 35510 0.11046839845221257 YKQLNLAIS 9 Unmodified _YKQLNLAIS_ 0 0 0 REV__nc|ENSG00000001461|Q6P499-3|NIPAL3 REV__nc|ENSG00000001461|Q6P499-3|NIPAL3 MULTI-MSMS UPN47_class_I_Rep_2 3 525.3036499023438 2 525.303124 1048.5917 0.11856 6.228E-05 0.43055 0.00022617 0.54911 0.00028845 525.3033993974875 61.037 0.70771 64.303 64.01 64.718 3.2654 80 59 2 0 0 0 0.30034 1 14385 14385 13.906 0 1 182370 + 56455 17511 35493 35511 64900 64900 0.06934315994340068 YKQVLEPSSCQ 11 Unmodified _YKQVLEPSSCQ_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS UPN47_class_I_Rep_2 3 641.3058471679688 2 641.31082 1280.60709 NaN NaN NaN NaN NaN NaN NaN 37.16 1 40.559 40.059 41.059 3.3988 0 0 0 0.38417 1 7054 7054 0.96228 0.36078 1 56456 7160 35494 35512 64901 64901 -0.021991852707287762 YKRAKALD 8 Unmodified _YKRAKALD_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS UPN47_class_I_Rep_1 2 482.7820739746094 2 482.782359 963.550165 -0.36625 -0.00017682 -0.49105 -0.00023707 -0.8573 -0.00041389 482.78206355858475 16.165 0.5245 19.678 19.49 20.014 3.5132 115 63 2 0 0 0 0.82752 1 987 987 2.3027 0 1 83472 56457 3186 35495 35513 64902 64902 0.06693180025683887 YKRCQKRC 8 Unmodified _YKRCQKRC_ 0 0 0 HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|20|3|sense HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|20|3|sense HERV4_I-int_dup310|chr19:58252139-58252808:-|3.958151258375448|0.2714823197332499|3.87|151.0|20|3|sense MSMS UPN47_class_I_Rep_3 4 542.718505859375 2 542.77877 1083.54299 NaN NaN NaN NaN NaN NaN NaN 21.527 1 24.877 24.377 25.377 3.3496 0 0 0 0.40746 1 2423 2423 0.69038 0 1 56458 8060 35496 35514 64903 64903 0.0045580088196857105 YKRELFFN 8 Unmodified _YKRELFFN_ 0 0 0 REV__L1MEc_dup17295|chr18:80125996-80126828:-|1.1865320543414275|0.1021518697200698|3.54|151.0|22|3|sense REV__L1MEc_dup17295|chr18:80125996-80126828:-|1.1865320543414275|0.1021518697200698|3.54|151.0|22|3|sense MSMS UPN48_class_I_Rep_2 6 558.7954711914062 2 558.795466 1115.57638 NaN NaN NaN NaN NaN NaN NaN 92.848 1 96.618 96.118 97.118 3.77 0 0 0 0.40746 1 22089 22089 0.69038 0 1 + 56459 28411 35497 35515 64904 64904 0.023214491971884854 YKRELRRV 8 Unmodified _YKRELRRV_ 0 0 0 REV__ENSG00000213380|ENST00000306875|COG8 REV__ENSG00000213380|ENST00000306875|COG8 MSMS UPN46_class_I_Rep_3 1 560.3409423828125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 101.67 1 101.67 101.17 102.17 0 0 0 0 0.40746 1 24805 24805 0.69038 0 1 + 56460 21244 35498 35516 64905 64905 0.11267337965296065 YKRELRRV 8 Unmodified _YKRELRRV_ 0 0 0 REV__ENSG00000213380|ENST00000306875|COG8 REV__ENSG00000213380|ENST00000306875|COG8 MSMS UPN46_class_I_Rep_3 1 560.3409423828125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 102.57 1 102.57 102.07 103.07 0 0 0 0 0.40746 1 25031 25031 0.69038 0 1 + 56461 21244 35498 35516 64906 64906 0.11267337965296065 YKRELRRV 8 Unmodified _YKRELRRV_ 0 0 0 REV__ENSG00000213380|ENST00000306875|COG8 REV__ENSG00000213380|ENST00000306875|COG8 MSMS UPN47_class_I_Rep_1 2 560.340576171875 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 97.703 1 101.49 100.99 101.99 3.7861 0 0 0 0.40746 1 24205 24205 0.69038 0 1 + 56462 21244 35498 35516 64907 64907 0.11267337965296065 YKRELRRV 8 Unmodified _YKRELRRV_ 0 0 0 REV__ENSG00000213380|ENST00000306875|COG8 REV__ENSG00000213380|ENST00000306875|COG8 MSMS UPN48_class_I_Rep_3 7 560.34033203125 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 97.211 1 101.12 100.62 101.62 3.9084 0 0 0 0.40746 1 23045 23045 0.69038 0.16561 1 + 56463 21244 35498 35516 64908 64908 0.11267337965296065 YKRELRRV 8 Unmodified _YKRELRRV_ 0 0 0 REV__ENSG00000213380|ENST00000306875|COG8 REV__ENSG00000213380|ENST00000306875|COG8 MSMS UPN48_class_I_Rep_3 7 560.3400268554688 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 97.365 1 101.27 100.77 101.77 3.9084 0 0 0 0.40746 1 23079 23079 0.69038 0 1 + 56464 21244 35498 35516 64909 64909 0.11267337965296065 YKRFKMLRLYR 11 Unmodified _YKRFKMLRLYR_ 0 0 0 Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|54|2|anti-sense Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|54|2|anti-sense Tigger3b_dup3540|chr9:37840212-37841116:+|1.3840876745723831|0.2173626054805386|2.67|151.0|54|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 525.6444091796875 3 525.309779 1572.90751 0.29317 0.000154 0.020983 1.1023E-05 0.31415 0.00016503 525.3096649219041 96.82 0.30659 100.43 100.26 100.56 3.6088 52 31 2 0 0 0 0.68478 2 23306 23306;23354 0.094841 0 1 228980 56465 33386 35499 35517 64910;64911 64910 0.14396991241187607 YKRKFRKRN 9 Unmodified _YKRKFRKRN_ 0 0 0 HAL1_dup4065|chr3:4618228-4619472:-|1.6474920314867694|0.0050757786215936|8.34|151.0|33|3|sense HAL1_dup4065|chr3:4618228-4619472:-|1.6474920314867694|0.0050757786215936|8.34|151.0|33|3|sense HAL1_dup4065|chr3:4618228-4619472:-|1.6474920314867694|0.0050757786215936|8.34|151.0|33|3|sense MSMS UPN48_class_I_Rep_2 6 648.3936157226562 2 648.394005 1294.77346 NaN NaN NaN NaN NaN NaN NaN 107.43 1 111.11 110.61 111.61 3.6783 0 0 0 0.29868 1 25394 25394 10.824 0.024421 1 56466 7885 35500 35518 64912 64912 0.13786093530643484 YKRKIKIR 8 Unmodified _YKRKIKIR_ 0 0 0 REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|21|3|sense REV__Tigger3b_dup5244|chr14:30961905-30962530:+|1.0089817877105682|0.01537258760099|6.04|151.0|21|3|sense MSMS UPN48_class_I_Rep_1 5 552.8711547851562 2 552.871843 1103.72913 NaN NaN NaN NaN NaN NaN NaN 42.538 1 46.046 45.546 46.546 3.5079 0 0 0 0.40798 1 7879 7879 0 0 1 + 56467 32755 35501 35519 64913 64913 0.18141689384424353 YKRKQKRST 9 Unmodified _YKRKQKRST_ 0 0 0 L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|115|2|sense L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|115|2|sense L1PA3_dup7863|chr11:14737619-14744023:-|1.8242420512221784|0.0523254410319352|5.12|151.0|115|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 597.8561401367188 2 597.856921 1193.69929 0.48828 0.00029192 -0.50848 -0.000304 -0.020205 -1.2079E-05 598.3583623650973 85.688 1.3356 89.06 88.741 90.076 3.3716 281 165 2 0 0 0 0.50088 1 21566 21566 0.52476 0 1 409170 56468 14286 35502 35520 64914 64914 0.11018705648439209 YKRLFFLF 8 Unmodified _YKRLFFLF_ 0 0 0 L1ME1_dup359|chr1:32847080-32847310:-|1.037216718827143|0.0679829308341001|3.93|151.0|1|1|sense L1ME1_dup359|chr1:32847080-32847310:-|1.037216718827143|0.0679829308341001|3.93|151.0|1|1|sense L1ME1_dup359|chr1:32847080-32847310:-|1.037216718827143|0.0679829308341001|3.93|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 567.3299560546875 2 567.328945 1132.64334 0.47997 0.0002723 2.3015 0.0013057 2.7815 0.001578 567.3301199068613 82.209 0.21051 85.894 85.788 85.999 3.685 32 25 2 0 0 0 0.72333 1 19462 19462 0.69038 0 1 122480 56469 12399 35503 35521 64915 64915 0.08232104478929614 YKRLTSLL 8 Unmodified _YKRLTSLL_ 0 0 0 L1MA7_dup1460|chr3:119424724-119427829:-|2.016947441213748|0.3126358225838402|2.69|151.0|41|2|sense L1MA7_dup1460|chr3:119424724-119427829:-|2.016947441213748|0.3126358225838402|2.69|151.0|41|2|sense L1MA7_dup1460|chr3:119424724-119427829:-|2.016947441213748|0.3126358225838402|2.69|151.0|41|2|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 497.2626037597656 2 497.30821 992.601866 -0.27617 -0.00013734 -0.014454 -7.1881E-06 -0.29062 -0.00014453 497.30780782965655 38.612 0.075901 41.853 41.782 41.858 3.2414 6 4 2 0 0 0 0.72333 1 7525 7525 2.5775 0 1 43314 56470 10004 35504 35522 64916 64916 0.10526923719623937 YKRMLKKVE 9 Unmodified _YKRMLKKVE_ 0 0 0 REV__ENSG00000101265|ENST00000379400|RASSF2 REV__ENSG00000101265|ENST00000379400|RASSF2 MSMS UPN48_class_I_Rep_3 7 597.8556518554688 2 597.855001 1193.69545 NaN NaN NaN NaN NaN NaN NaN 84.453 1 88.202 87.702 88.702 3.7494 0 0 0 0.39518 1 20040 20040 1.8442 0.36234 1 + 56471 18152 35505 35523 64917 64917 0.10634899830370159 YKRRFLCYL 9 Unmodified _YKRRFLCYL_ 0 0 0 REV__L1MC5a_dup10214|chrX:154071629-154072589:+|3.503574923327112|0.0380033578889536|6.53|151.0|18|2|sense REV__L1MC5a_dup10214|chrX:154071629-154072589:+|3.503574923327112|0.0380033578889536|6.53|151.0|18|2|sense MSMS UPN48_class_I_Rep_3 7 631.3477783203125 2 631.347343 1260.68013 NaN NaN NaN NaN NaN NaN NaN 35.3 1 38.972 38.472 39.472 3.6721 0 0 0 0.4007 1 5707 5707 0.52476 0 1 + 56472 27103 35506 35524 64918 64918 0.060220330331958394 YKRRHKRRKRE 11 Unmodified _YKRRHKRRKRE_ 0 0 0 L1ME1_dup25822|chr15:56955585-56956904:-|1.6417500362703066|0.0127937919981779|7.0|151.0|25|2|sense L1ME1_dup25822|chr15:56955585-56956904:-|1.6417500362703066|0.0127937919981779|7.0|151.0|25|2|sense L1ME1_dup25822|chr15:56955585-56956904:-|1.6417500362703066|0.0127937919981779|7.0|151.0|25|2|sense MSMS UPN46_class_I_Rep_3 1 538.3275146484375 3 538.329224 1611.96584 NaN NaN NaN NaN NaN NaN NaN 96.896 1 96.896 96.396 97.396 0 0 0 0 0.38417 1 23568 23568 0 0 1 56473 12334 35507 35525 64919 64919 0.18433808930626583 YKRRQRYVN 9 Unmodified _YKRRQRYVN_ 0 0 0 REV__ENSG00000139287|ENST00000333850|TPH2 REV__ENSG00000139287|ENST00000333850|TPH2 MSMS UPN46_class_I_Rep_3 1 641.8594360351562 2 641.859995 1281.70544 NaN NaN NaN NaN NaN NaN NaN 112.64 1 112.64 112.14 113.14 0 0 0 0 0.4007 1 27814 27814 0.52476 0 1 + 56474 19308 35508 35526 64920 64920 0.07585223880005287 YKRRRNKF 8 Unmodified _YKRRRNKF_ 0 0 0 L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|87|3|sense L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|87|3|sense L1PA7_dup8158|chrX:77539537-77543947:+|1.1945189685735262|0.03764222608319|4.99|150.0|87|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3483276367188 2 584.346523 1166.67849 0.42051 0.00024572 2.6186 0.0015302 3.0391 0.0017759 584.3478498930789 37.024 0.048813 37.024 36.988 37.037 0 7 3 3 0 0 0 0.82752 1 6924 6924 0.69038 0 1 203490 56475 14898 35509 35527 64921 64921 0.10182160059457601 YKRSEQLK 8 Unmodified _YKRSEQLK_ 0 0 0 REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|25|1|sense REV__L1ME1_dup25821|chr15:56951948-56954264:-|2.548253827710321|0.0326969697019733|6.28|151.0|25|1|sense MSMS UPN47_class_I_Rep_3 4 526.2454223632812 2 526.298373 1050.58219 NaN NaN NaN NaN NaN NaN NaN 35.414 1 38.669 38.169 39.169 3.2547 0 0 0 0.40625 1 6557 6557 2.3027 0 1 + 56476 27706 35510 35528 64922 64922 0.05892547708845086 YKRVKRRS 8 Unmodified _YKRVKRRS_ 0 0 0 REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense MSMS UPN47_class_I_Rep_2 3 546.8408813476562 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.881 1 96.349 95.849 96.849 3.4687 0 0 0 0.40746 1 22941 22941 0.69038 0 1 + 56477 29251 35511 35529 64923 64923 0.12542757685173456 YKRVKRRS 8 Unmodified _YKRVKRRS_ 0 0 0 REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense MSMS UPN47_class_I_Rep_2 3 546.8405151367188 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 94.749 1 98.221 97.721 98.721 3.472 0 0 0 0.40746 1 23341 23341 0.69038 0 1 + 56478 29251 35511 35529 64924 64924 0.12542757685173456 YKRVKRRS 8 Unmodified _YKRVKRRS_ 0 0 0 REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense MSMS UPN47_class_I_Rep_3 4 546.8402099609375 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 93.14 1 96.545 96.045 97.045 3.4052 0 0 0 0.40746 1 23231 23231 0.69038 0 1 + 56479 29251 35511 35529 64925 64925 0.12542757685173456 YKRVKRRS 8 Unmodified _YKRVKRRS_ 0 0 0 REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 547.3445434570312 2 546.841074 1091.66759 0.49052 0.00026823 1.4226 0.00077795 1.9131 0.0010462 547.344387663044 93.062 0.090218 96.467 96.406 96.496 3.4052 20 12 2 0 0 0 0.72333 1 23209 23209 0.69038 0 1 74981 + 56480 29251 35511 35529 64926 64926 0.12542757685173456 YKRVKRRS 8 Unmodified _YKRVKRRS_ 0 0 0 REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense REV__L1PA15_dup4898|chrX:79303347-79305890:+|1.4592138481339807|0.0058161240862035|7.97|151.0|23|1|sense MSMS UPN48_class_I_Rep_2 6 546.8410034179688 2 546.841074 1091.66759 NaN NaN NaN NaN NaN NaN NaN 92.94 1 96.71 96.21 97.21 3.77 0 0 0 0.40746 1 22109 22109 0.69038 0 1 + 56481 29251 35511 35529 64927 64927 0.12542757685173456 YKSFYQRH 8 Unmodified _YKSFYQRH_ 0 0 0 L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|84|2|sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|84|2|sense L1PA15_dup1978|chr4:79988279-79992129:+|1.7376865483906656|0.0739394951890595|4.55|151.0|84|2|sense MSMS UPN46_class_I_Rep_3 1 564.379150390625 2 564.78289 1127.55123 NaN NaN NaN NaN NaN NaN NaN 42.656 1 42.656 42.156 43.156 0 0 0 0 0.40746 1 8461 8461 0.69038 0 1 56482 13888 35512 35530 64928 64928 -0.007446056053822758 YKSHSIKLK 9 Unmodified _YKSHSIKLK_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.332275390625 2 552.332216 1102.64988 0.50107 0.00027676 0.62974 0.00034783 1.1308 0.00062458 552.3321756768522 50.247 0.95264 53.772 53.364 54.317 3.5246 116 63 3 0 0 0 0.30034 1 10221 10221 13.906 2.4113 1 308590 56483 9960 35513 35531 64929 64929 0.10265997639635316 YKSHSIKLK 9 Unmodified _YKSHSIKLK_ 0 0 0 L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense L1MA6_dup171|chr1:157811167-157816780:+|2.7607129817346627|0.2976377314050756|3.21|151.0|79|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.3318481445312 2 552.332216 1102.64988 0.28126 0.00015535 0.78783 0.00043514 1.0691 0.00059049 552.3322235081686 50.282 0.9868 53.903 53.358 54.345 3.621 111 61 3 0 0 0 0.30034 1 10122 10122 13.906 0.86358 1 440720 56484 9960 35513 35531 64930 64930 0.10265997639635316 YKSKKYVA 8 Unmodified _YKSKKYVA_ 0 0 0 REV__L1ME3A_dup3304|chr3:128733840-128733988:-|1.2241448226281189|0.0090912976893676|7.07|151.0|8|2|anti-sense REV__L1ME3A_dup3304|chr3:128733840-128733988:-|1.2241448226281189|0.0090912976893676|7.07|151.0|8|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 493.7865905761719 2 493.78711 985.559667 0.30457 0.00015039 -1.0086 -0.00049804 -0.70405 -0.00034765 493.78643795309193 108.95 0.8518 108.95 108.79 109.64 0 112 62 3 0 0 0 0.82752 1 26801 26801 4.756 0 1 6311600 + 56485 28013 35514 35532 64931 64931 0.06630948311226348 YKSKKYVA 8 Unmodified _YKSKKYVA_ 0 0 0 REV__L1ME3A_dup3304|chr3:128733840-128733988:-|1.2241448226281189|0.0090912976893676|7.07|151.0|8|2|anti-sense REV__L1ME3A_dup3304|chr3:128733840-128733988:-|1.2241448226281189|0.0090912976893676|7.07|151.0|8|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 493.786376953125 2 493.78711 985.559667 0.27329 0.00013495 -0.79617 -0.00039314 -0.52288 -0.00025819 493.7865711933471 108.82 0.48751 112.36 112.17 112.66 3.5382 84 52 2 0 0 0 0.82752 1 26759 26759 4.756 0 1 9847200 + 56486 28013 35514 35532 64932 64932 0.06630948311226348 YKSKKYVA 8 Unmodified _YKSKKYVA_ 0 0 0 REV__L1ME3A_dup3304|chr3:128733840-128733988:-|1.2241448226281189|0.0090912976893676|7.07|151.0|8|2|anti-sense REV__L1ME3A_dup3304|chr3:128733840-128733988:-|1.2241448226281189|0.0090912976893676|7.07|151.0|8|2|anti-sense MSMS UPN48_class_I_Rep_3 7 493.7862243652344 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 109.42 1 113.09 112.59 113.59 3.6751 0 0 0 0.4044 1 25982 25982 4.756 0 1 + 56487 28013 35514 35532 64933 64933 0.06630948311226348 YKSKNKIMY 9 Unmodified _YKSKNKIMY_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-2|VPS13A REV__nc|ENSG00000197969|Q96RL7-2|VPS13A MSMS UPN48_class_I_Rep_2 6 587.8037109375 2 587.818084 1173.62162 NaN NaN NaN NaN NaN NaN NaN 42.789 1 46.547 46.047 47.047 3.7579 0 0 0 0.37476 1 7963 7963 6.7232 0.51738 1 + 56488 32094 35515 35533 64934 64934 0.041749316680579796 YKSKTREW 8 Unmodified _YKSKTREW_ 0 0 0 REV__ENST00000511920.1_1_5:96514654-96518862:-|nuORF REV__ENST00000511920.1_1_5:96514654-96518862:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 549.27197265625 2 549.290548 1096.56654 0.027422 1.5062E-05 0.83895 0.00046083 0.86637 0.00047589 549.2910615387643 39.601 0.37291 42.979 42.806 43.179 3.3785 31 23 2 0 0 0 0.82752 1 7830 7830 7.9102 0.62092 1 52722 + 56489 22742 35516 35534 64935 64935 0.022122611917893664 YKSLPFPTMI 10 Unmodified _YKSLPFPTMI_ 0 0 0 REV__L1PB1_dup9089|chr10:72517240-72517780:+|1.866647301512814|0.0485916010540794|5.26|151.0|32|3|anti-sense REV__L1PB1_dup9089|chr10:72517240-72517780:+|1.866647301512814|0.0485916010540794|5.26|151.0|32|3|anti-sense MSMS UPN48_class_I_Rep_2 6 598.906005859375 2 598.822835 1195.63112 NaN NaN NaN NaN NaN NaN NaN 45.686 1 49.444 48.944 49.944 3.7579 0 0 0 0.53105 1 8845 8845 1.4819 0.15237 1 + 56490 30504 35517 35535 64936 64936 0.04112699953589072 YKSVALFT 8 Unmodified _YKSVALFT_ 0 0 0 L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|228|3|anti-sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|228|3|anti-sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|228|3|anti-sense MSMS UPN46_class_I_Rep_3 1 464.79510498046875 2 464.760561 927.506569 NaN NaN NaN NaN NaN NaN NaN 42.412 1 42.412 41.912 42.912 0 0 0 0 0.40625 1 8394 8394 2.3027 0 1 56491 10511 35518 35536 64937 64937 0.03991570528569355 YKSVKLPVLKV 11 Unmodified _YKSVKLPVLKV_ 0 0 0 ENST00000592024.1_1_17:40253781-40254356:-|nuORF;ENSG00000108771|ENST00000251642|DHX58 ENST00000592024.1_1_17:40253781-40254356:-|nuORF ENST00000592024.1_1_17:40253781-40254356:-|nuORF MSMS UPN48_class_I_Rep_2 6 637.415283203125 2 637.415749 1272.81694 NaN NaN NaN NaN NaN NaN NaN 75.37 1 78.959 78.459 79.459 3.59 0 0 0 0.38417 1 17772 17772 0 0 1 56492 1874 35519 35537 64938 64938 0.1914484546452968 YKTEKTKE 8 Unmodified _YKTEKTKE_ 0 0 0 ENST00000469826.1_1_7:130080422-130080539:-|nuORF ENST00000469826.1_1_7:130080422-130080539:-|nuORF ENST00000469826.1_1_7:130080422-130080539:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 513.7760620117188 2 513.776939 1025.53933 -0.2423 -0.00012449 -0.079117 -4.0648E-05 -0.32142 -0.00016514 513.7768871842206 16.358 0.27483 19.88 19.792 20.066 3.5224 43 32 2 0 0 0 0.82752 1 1031 1031 0.6015 0 1 26970 56493 6917 35520 35538 64939 64939 0.027577328607549134 YKTFKTLLT 9 Unmodified _YKTFKTLLT_ 0 0 0 REV__Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|117|3|anti-sense REV__Tigger1_dup7328|chrX:44938260-44940032:+|3.2964287582365963|0.0324364184925173|6.67|151.0|117|3|anti-sense MSMS UPN47_class_I_Rep_1 2 557.8314208984375 2 557.828975 1113.6434 NaN NaN NaN NaN NaN NaN NaN 91.948 1 95.653 95.153 96.153 3.7053 0 0 0 0.40098 1 22930 22930 0.45834 0 1 + 56494 32521 35521 35539 64940 64940 0.09112059688277441 YKTRICWK 8 Unmodified _YKTRICWK_ 0 0 0 ENST00000535589.3_1_2:114648352-114674470:+|nuORF;ENST00000263238.6_1_2:114647705-114674470:+|nuORF;ENST00000415792.5_1_2:114647705-114688890:+|nuORF;ENST00000446821.5_1_2:114647705-114684940:+|nuORF ENST00000535589.3_1_2:114648352-114674470:+|nuORF ENST00000535589.3_1_2:114648352-114674470:+|nuORF MSMS UPN47_class_I_Rep_1 2 549.3012084960938 2 549.299862 1096.58517 NaN NaN NaN NaN NaN NaN NaN 99.323 1 103.12 102.62 103.62 3.7926 0 0 0 0.40157 1 24566 24566 7.2892 2.5332 1 56495 5977 35522 35540 64941 64941 0.04074099562012634 YKTRKKKSKKR 11 Unmodified _YKTRKKKSKKR_ 0 0 0 REV__L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|102|2|sense REV__L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|102|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 483.64654541015625 3 484.31581 1449.9256 0.21763 0.0001054 -1.0456 -0.00050642 -0.82801 -0.00040102 484.31529911833246 51.236 0.063446 51.236 51.206 51.269 0 11 7 2 0 0 0 22.551 1 10873 10873 0.094841 0 1 501600 + 56496 29774 35523 35541 64942 64942 0.21863449487500475 YKTRKKKSKKR 11 Unmodified _YKTRKKKSKKR_ 0 0 0 REV__L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|102|2|sense REV__L1PA5_dup5064|chr7:77142464-77148558:-|1.4182552011328855|0.2031177842394026|2.8|150.0|102|2|sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 484.31581 1449.9256 0.15196 7.3599E-05 -0.8362 -0.00040498 -0.68423 -0.00033138 484.3154169904474 47.306 0.74472 50.943 50.274 51.019 3.6363 -0.1467 7.9968E-05 NaN 0.094841 90 52 2 NaN NaN NaN NaN 0 NaN NaN 0 2345400 + 56497 29774 35523 35541 0.21863449487500475 YKTRKTEK 8 Unmodified _YKTRKTEK_ 0 0 0 REV__LTR78B_dup2280|chr11:78394625-78394911:+|1.6919984720094896|0.0178058377109506|6.57|151.0|2|1|sense REV__LTR78B_dup2280|chr11:78394625-78394911:+|1.6919984720094896|0.0178058377109506|6.57|151.0|2|1|sense MSMS UPN48_class_I_Rep_1 5 527.3062133789062 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 99.293 1 102.9 102.4 103.4 3.6065 0 0 0 0.40472 1 23971 23971 4.3292 0 1 + 56498 31012 35524 35542 64943 64943 0.07364834225904815 YKTTQRTSI 9 Unmodified _YKTTQRTSI_ 0 0 0 REV__L1PB4_dup7121|chr19:51217719-51220275:-|3.4085539365314226|0.265821347117296|3.68|151.0|70|3|sense REV__L1PB4_dup7121|chr19:51217719-51220275:-|3.4085539365314226|0.265821347117296|3.68|151.0|70|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 549.3017578125 2 549.301113 1096.58767 0.48932 0.00026878 0.33444 0.00018371 0.82376 0.00045249 549.3012549363141 99.841 0.32504 103.6 103.35 103.67 3.7575 56 40 2 0 0 0 0.43982 1 23720 23720 5.7319 0 1 254740 + 56499 30622 35525 35543 64944 64944 0.04324226500671102 YKTVRSASVS 10 Unmodified _YKTVRSASVS_ 0 0 0 LTR49-int_dup1300|chr10:913061-913660:+|3.8194652666290954|0.1651252955121066|4.53|151.0|20|3|sense LTR49-int_dup1300|chr10:913061-913660:+|3.8194652666290954|0.1651252955121066|4.53|151.0|20|3|sense LTR49-int_dup1300|chr10:913061-913660:+|3.8194652666290954|0.1651252955121066|4.53|151.0|20|3|sense MSMS UPN47_class_I_Rep_2 3 549.3010864257812 2 549.301113 1096.58767 NaN NaN NaN NaN NaN NaN NaN 101.17 1 104.67 104.17 105.17 3.5063 0 0 0 0.53105 1 24701 24701 8.7454 1.4562 1 56500 15655 35526 35544 64945 64945 0.04324226500648365 YKTYHGDVF 9 Unmodified _YKTYHGDVF_ 0 0 0 nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-2|PTPN13 MSMS UPN47_class_I_Rep_1 2 565.269775390625 2 565.269281 1128.52401 NaN NaN NaN NaN NaN NaN NaN 50.791 1 54.42 53.92 54.92 3.6285 0 0 0 0.39428 1 11168 11168 2.0598 0 1 56501 4023 35527 35545 64946 64946 -0.03511133936422084 YKTYTLKTK 9 Unmodified _YKTYTLKTK_ 0 0 0 L1MB8_dup10939|chr11:47828157-47829222:+|1.0303459878049834|0.03617499641216|4.83|150.0|11|2|sense L1MB8_dup10939|chr11:47828157-47829222:+|1.0303459878049834|0.03617499641216|4.83|150.0|11|2|sense L1MB8_dup10939|chr11:47828157-47829222:+|1.0303459878049834|0.03617499641216|4.83|150.0|11|2|sense MSMS UPN48_class_I_Rep_2 6 573.329833984375 2 573.331882 1144.64921 NaN NaN NaN NaN NaN NaN NaN 88.692 1 92.43 91.93 92.93 3.7379 0 0 0 0.32573 1 21112 21112 9.3831 1.2276 1 56502 10905 35528 35546 64947 64947 0.0826715819994206 YKVFRVFV 8 Unmodified _YKVFRVFV_ 0 0 0 REV__L1PA5_dup2127|chr3:114988097-114992005:-|2.457093567137433|0.0669372161504906|5.2|151.0|216|3|anti-sense REV__L1PA5_dup2127|chr3:114988097-114992005:-|2.457093567137433|0.0669372161504906|5.2|151.0|216|3|anti-sense MSMS UPN47_class_I_Rep_2 3 529.3146362304688 2 529.313295 1056.61204 NaN NaN NaN NaN NaN NaN NaN 24.706 1 28.189 27.689 28.689 3.483 0 0 0 0.40746 1 3318 3318 0.69038 0 1 + 56503 29726 35529 35547 64948 64948 0.08599531444838249 YKVHGRLP 8 Unmodified _YKVHGRLP_ 0 0 0 ENST00000482114.1_1_4:123130334-123145991:+|nuORF;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1 ENST00000482114.1_1_4:123130334-123145991:+|nuORF ENST00000482114.1_1_4:123130334-123145991:+|nuORF MSMS UPN48_class_I_Rep_3 7 485.2856750488281 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 36.301 1 39.968 39.468 40.468 3.6667 0 0 0 0.40746 1 5992 5992 0.69038 0 1 56504 3105 35530 35548 64949 64949 0.07004903608185487 YKVKHKLTKWP 11 Unmodified _YKVKHKLTKWP_ 0 0 0 L1ME1_dup2970|chr2:32372859-32373112:-|1.0470211447767872|0.0038782972323606|8.08|151.0|2|1|sense L1ME1_dup2970|chr2:32372859-32373112:-|1.0470211447767872|0.0038782972323606|8.08|151.0|2|1|sense L1ME1_dup2970|chr2:32372859-32373112:-|1.0470211447767872|0.0038782972323606|8.08|151.0|2|1|sense MSMS UPN47_class_I_Rep_1 2 476.6235046386719 3 476.62224 1426.84489 NaN NaN NaN NaN NaN NaN NaN 107.47 1 111.15 110.65 111.65 3.6724 0 0 0 0.38417 1 26337 26337 6.2344 1.8282 1 56505 12378 35531 35549 64950 64950 0.1485416844463998 YKVKHTFT 8 Unmodified _YKVKHTFT_ 0 0 0 L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|19|3|sense L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|19|3|sense L1ME1_dup29901|chr20:47527285-47527903:-|2.7506624075351733|0.226415142187727|3.6|151.0|19|3|sense MSMS UPN47_class_I_Rep_2 3 512.2849731445312 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 28.564 1 32.062 31.562 32.562 3.4986 0 0 0 0.40643 1 4449 4449 2.0598 0 1 56506 12380 35532 35550 64951 64951 0.044540641684761795 YKVLSLPHI 9 Unmodified _YKVLSLPHI_ 0 0 0 L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|18|3|sense L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|18|3|sense L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|18|3|sense MSMS UPN46_class_I_Rep_3 1 535.3260498046875 2 535.32386 1068.63317 NaN NaN NaN NaN NaN NaN NaN 107.47 1 107.47 106.97 107.97 0 0 0 0 0.36505 1 26211 26211 7.2892 0 1 56507 11027 35533 35551 64952 64952 0.10159496753726671 YKVLSLPHI 9 Unmodified _YKVLSLPHI_ 0 0 0 L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|18|3|sense L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|18|3|sense L1MB8_dup6850|chr7:151513858-151514466:+|1.4820861346743492|0.0226636636243868|6.03|151.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 535.3251342773438 2 535.32386 1068.63317 NaN NaN NaN NaN NaN NaN NaN 107.36 1 111.04 110.54 111.54 3.6813 0 0 0 0.36505 1 25317 25317 7.2892 0 1 56508 11027 35533 35551 64953 64953 0.10159496753726671 YKVRIWFLK 9 Unmodified _YKVRIWFLK_ 0 0 0 REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MULTI-SECPEP UPN47_class_I_Rep_2 3 417.92205810546875 3 418.257009 1251.7492 -0.38151 -0.00015957 -0.70461 -0.00029471 -1.0861 -0.00045428 418.2567184396788 98.774 0.12718 102.26 102.22 102.35 3.4897 32 18 2 0 0 0 0.12532 1 24211 24211 0.23584 0 1 509960 + 56509 18928 35534 35552 64954 64954 0.13339440324375573 YKVRIWFLK 9 Unmodified _YKVRIWFLK_ 0 0 0 REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MULTI-MATCH UPN47_class_I_Rep_3 4 3 418.257009 1251.7492 -0.5694 -0.00023815 -0.25939 -0.00010849 -0.82879 -0.00034665 418.256905784904 98.972 0.079407 102.4 102.37 102.45 3.4328 0.057366 0.00065466 NaN 0.23584 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 394640 + 56510 18928 35534 35552 0.13339440324375573 YKVRIWFLK 9 Unmodified _YKVRIWFLK_ 0 0 0 REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 REV__nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MULTI-MATCH UPN48_class_I_Rep_1 5 3 418.257009 1251.7492 -0.13108 -5.4826E-05 -0.98264 -0.00041099 -1.1137 -0.00046582 418.2566167688202 98.767 0.12085 102.37 102.33 102.45 3.6065 0.026268 -0.00025284 NaN 0.23584 33 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1347100 + 56511 18928 35534 35552 0.13339440324375573 YKVRYGRRV 9 Unmodified _YKVRYGRRV_ 0 0 0 MER21B_dup903|chr6:3086465-3086990:-|1.2279774679684723|0.0975477957492143|3.65|151.0|33|2|anti-sense MER21B_dup903|chr6:3086465-3086990:-|1.2279774679684723|0.0975477957492143|3.65|151.0|33|2|anti-sense MER21B_dup903|chr6:3086465-3086990:-|1.2279774679684723|0.0975477957492143|3.65|151.0|33|2|anti-sense MSMS UPN46_class_I_Rep_3 1 598.8546752929688 2 598.854181 1195.69381 NaN NaN NaN NaN NaN NaN NaN 87.726 1 87.726 87.226 88.226 0 0 0 0 0.4007 1 21036 21036 0.52476 0 1 56512 15877 35535 35553 64955 64955 0.10379026856639939 YKVSRLEEI 9 Unmodified _YKVSRLEEI_ 0 0 0 REV__ENST00000215862.8_1_22:31363581-31363752:-|nuORF REV__ENST00000215862.8_1_22:31363581-31363752:-|nuORF MSMS UPN47_class_I_Rep_1 2 568.82080078125 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 68.877 1 72.245 71.745 72.745 3.3678 0 0 0 0.39428 1 16656 16656 2.0598 0 1 + 56513 21471 35536 35554 64956 64956 0.06133683677512636 YKVSWAWWH 9 Unmodified _YKVSWAWWH_ 0 0 0 AluSx_dup47102|chr7:139050368-139050669:-|1.181928889797098|0.0407860391841447|4.86|151.0|15|3|sense AluSx_dup47102|chr7:139050368-139050669:-|1.181928889797098|0.0407860391841447|4.86|151.0|15|3|sense AluSx_dup47102|chr7:139050368-139050669:-|1.181928889797098|0.0407860391841447|4.86|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 631.8078002929688 2 631.808908 1261.60326 NaN NaN NaN NaN NaN NaN NaN 36.035 1 39.711 39.211 40.211 3.6762 0 0 0 0.40038 1 6679 6679 0.6015 0 1 56514 287 35537 35555 64957 64957 -0.017074421916504434 YKWLEQLH 8 Unmodified _YKWLEQLH_ 0 0 0 REV__L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|105|3|sense REV__L1PA10_dup4000|chrX:63536717-63541225:+|1.7470811351685882|0.0413106399916158|5.4|151.0|105|3|sense MSMS UPN47_class_I_Rep_1 2 558.7950439453125 2 558.795466 1115.57638 NaN NaN NaN NaN NaN NaN NaN 12.377 1 15.827 15.327 16.327 3.45 0 0 0 0.40746 1 72 72 0.69038 0 1 + 56515 28967 35538 35556 64958 64958 0.02321449197165748 YKWLQRIR 8 Unmodified _YKWLQRIR_ 0 0 0 REV__ENST00000374724.1_2_9:108061538-108097897:+|nuORF REV__ENST00000374724.1_2_9:108061538-108097897:+|nuORF MSMS UPN48_class_I_Rep_1 5 581.8428955078125 2 581.845825 1161.6771 NaN NaN NaN NaN NaN NaN NaN 88.642 1 92.265 91.765 92.765 3.6229 0 0 0 0.40746 1 21269 21269 0.69038 0 1 + 56516 22000 35539 35557 64959 64959 0.10272525970663082 YKWNHRLC 8 Unmodified _YKWNHRLC_ 0 0 0 L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|41|2|anti-sense L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|41|2|anti-sense L1MB7_dup1039|chr1:150819199-150819949:+|1.2332672067202493|0.1254957126324859|3.3|151.0|41|2|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2802734375 2 560.27946 1118.54437 NaN NaN NaN NaN NaN NaN NaN 29.824 1 33.316 32.816 33.816 3.4923 0 0 0 0.40746 1 4830 4830 0.69038 0 1 56517 10671 35540 35558 64960 64960 -0.010162417576111693 YKWSTGIFQ 9 Unmodified _YKWSTGIFQ_ 0 0 0 L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|67|2|sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|67|2|sense L1MA5_dup4171|chr19:34608686-34611653:-|1.4732973061447878|0.2963249191556321|2.31|151.0|67|2|sense MSMS UPN48_class_I_Rep_3 7 565.2874755859375 2 565.287474 1128.5604 NaN NaN NaN NaN NaN NaN NaN 31.992 1 35.693 35.193 36.193 3.7015 0 0 0 0.38784 1 4805 4805 3.5965 1.098 1 56518 9921 35541 35559 64961 64961 0.001257429602674165 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 601.80859375 2 601.808239 1201.60193 0.45176 0.00027188 0.24824 0.00014939 0.7 0.00042127 601.8083464974991 75.341 0.39732 78.841 78.578 78.976 3.4996 66 38 2 0 0 0 0.10817 2 17833 17833;17868 32.305 1.3787 1 814720 + 56519 31523 35542 35560 64962;64963 64962 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 601.8077392578125 2 601.808239 1201.60193 0.45151 0.00027172 0.18129 0.0001091 0.6328 0.00038082 601.8082390779251 75.568 0.22297 79.067 78.965 79.188 3.4996 60 20 4 0 0 0 0.30034 1 17941 17941 13.906 0.86358 1 743990 + 56520 31523 35542 35560 64964 64964 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 601.8087768554688 2 601.808239 1201.60193 0.45089 0.00027135 -0.07364 -4.4317E-05 0.37725 0.00022703 601.8082352005778 75.728 0.24411 79.228 79.179 79.423 3.4996 52 23 3 0 0 0 0.15122 1 17979 17979 25.399 10.561 1 418110 + 56521 31523 35542 35560 64965 64965 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 602.3102416992188 2 601.808239 1201.60193 0.45089 0.00027135 -0.07364 -4.4317E-05 0.37725 0.00022703 601.8082352005778 75.728 0.24411 79.228 79.179 79.423 3.4996 52 23 3 0 0 0 0.060395 1 17957 17957 32.305 0 1 418110 + 56522 31523 35542 35560 64966 64966 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.8089599609375 2 601.808239 1201.60193 0.58807 0.0003539 0.82256 0.00049503 1.4106 0.00084893 601.8086764549635 74.915 0.13869 78.481 78.428 78.567 3.5658 27 12 3 0 0 0 0.15122 1 17567 17567 25.399 1.3787 1 423730 + 56523 31523 35542 35560 64967 64967 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.8085327148438 2 601.808239 1201.60193 0.58658 0.00035301 0.1992 0.00011988 0.78578 0.00047289 601.8082117857371 75.564 0.47418 79.129 78.919 79.393 3.5658 98 50 3 0 0 0 0.15122 1 17744 17744 25.399 0 1 344350 + 56524 31523 35542 35560 64968 64968 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 601.808239 1201.60193 0.45151 0.00027172 0.18129 0.0001091 0.6328 0.00038082 601.8082390779251 75.568 0.22297 79.067 78.965 79.188 3.4996 -0.0238 6.1324E-06 NaN 25.399 60 20 4 NaN NaN NaN NaN 0 NaN NaN 0 743990 + 56525 31523 35542 35560 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 601.808239 1201.60193 0.45258 0.00027237 2.4902 0.0014986 2.9428 0.001771 601.8094812057585 74.96 0.027771 78.45 78.436 78.464 3.49 0.0098645 0.0017866 NaN 25.399 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 110380 + 56526 31523 35542 35560 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 601.808239 1201.60193 0.48043 0.00028913 -0.097466 -5.8656E-05 0.38296 0.00023047 601.8081039788606 75.476 0.10451 79.077 78.991 79.096 3.6011 -0.014413 -0.00032938 NaN 25.399 17 12 3 NaN NaN NaN NaN 0 NaN NaN 0 135780 + 56527 31523 35542 35560 0.009188789289510169 YKWSYETIL 9 Unmodified _YKWSYETIL_ 0 0 0 REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense REV__MER65-int_dup535|chr9:131690920-131692762:+|2.3143067349787207|0.035371664759729|6.03|151.0|34|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 601.808239 1201.60193 0.58807 0.0003539 0.82256 0.00049503 1.4106 0.00084893 601.8086764549635 74.915 0.13869 78.481 78.428 78.567 3.5658 0.041102 -0.00022065 NaN 25.399 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 423730 + 56528 31523 35542 35560 0.009188789289510169 YKYFTPFY 8 Unmodified _YKYFTPFY_ 0 0 0 L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|41|1|anti-sense L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|41|1|anti-sense L1MB7_dup16751|chr13:49769278-49770179:-|1.474534717375477|0.0164696036920159|6.48|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 564.7737426757812 2 564.773668 1127.53278 NaN NaN NaN NaN NaN NaN NaN 73.061 1 76.441 75.941 76.941 3.3799 0 0 0 0.40643 1 17917 17917 2.0598 0.21551 1 56529 10737 35543 35561 64969 64969 -0.025881602999561437 YKYILFLAVY 10 Unmodified _YKYILFLAVY_ 0 0 0 LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|65|2|anti-sense LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|65|2|anti-sense LOR1-int_dup266|chr2:240543386-240544492:+|1.206755588147947|0.0394866822159411|4.93|151.0|65|2|anti-sense MSMS UPN48_class_I_Rep_2 6 647.2012329101562 2 646.8681 1291.72165 NaN NaN NaN NaN NaN NaN NaN 48.415 1 52.132 51.632 52.632 3.7175 0 0 0 0.53105 1 9671 9671 1.8442 0 1 56530 15499 35544 35562 64970 64970 0.08745492273510536 YKYKQFIS 8 Unmodified _YKYKQFIS_ 0 0 0 REV__HAL1ME_dup435|chr1:203808073-203808702:-|2.004807869710638|0.0173053188497773|6.86|151.0|23|1|anti-sense REV__HAL1ME_dup435|chr1:203808073-203808702:-|2.004807869710638|0.0173053188497773|6.86|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_2 6 538.7902221679688 2 538.792392 1075.57023 NaN NaN NaN NaN NaN NaN NaN 59.694 1 63.181 62.681 63.681 3.4868 0 0 0 0.3903 1 13118 13118 11.64 0.14559 1 + 56531 23494 35545 35563 64971 64971 0.035469309656718906 YKYLEEEY 8 Unmodified _YKYLEEEY_ 0 0 0 ENST00000475277.1_1_1:235876468-235887465:-|nuORF;ENST00000473037.5_1_1:235826242-235897989:-|nuORF;ENSG00000143669|ENST00000389793|LYST ENST00000475277.1_1_1:235876468-235887465:-|nuORF ENST00000475277.1_1_1:235876468-235887465:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 568.7615356445312 2 568.760955 1135.50736 0.18602 0.0001058 0.41898 0.0002383 0.605 0.0003441 568.7612075912408 29.025 0.46104 29.025 28.803 29.264 0 51 38 2 0 0 0 0.82752 1 4504 4504 2.5775 0.73324 1 62607 56532 3317 35546 35564 64972 64972 -0.05497679613040418 YKYLLEYLFL 10 Unmodified _YKYLLEYLFL_ 0 0 0 L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|46|2|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|46|2|anti-sense L1MB5_dup8452|chr18:21000652-21001448:+|1.4270075771157726|0.0216641143399029|6.04|151.0|46|2|anti-sense MSMS UPN47_class_I_Rep_1 2 455.5881042480469 3 455.588202 1363.74278 NaN NaN NaN NaN NaN NaN NaN 18.677 1 22.258 21.758 22.758 3.5806 0 0 0 0.53105 1 1602 1602 0.15932 0 1 56533 10656 35547 35565 64973 64973 0.07545457582364179 YKYQYYFY 8 Unmodified _YKYQYYFY_ 0 0 0 L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|58|3|sense L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|58|3|sense L1MA2_dup1655|chr4:53084690-53087171:+|1.6439653863285977|0.0764076864541752|4.43|151.0|58|3|sense MSMS UPN47_class_I_Rep_1 2 619.2821655273438 2 619.281857 1236.54916 NaN NaN NaN NaN NaN NaN NaN 40.735 1 44.407 43.907 44.907 3.6719 0 0 0 0.40746 1 8109 8109 0.69038 0.088878 1 56534 9341 35548 35566 64974 64974 -0.05965079133875406 YKYRNILG 8 Unmodified _YKYRNILG_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS UPN47_class_I_Rep_1 2 513.789794921875 2 513.790184 1025.56581 -0.17542 -9.0127E-05 -0.8892 -0.00045686 -1.0646 -0.00054699 513.7895321575589 34.461 0.76237 38.146 37.758 38.521 3.6859 93 58 2 0 0 0 0.82752 1 6115 6115 5.2307 0 1 155280 56535 3709 35549 35567 64975 64975 0.05405466542742943 YKYRNILG 8 Unmodified _YKYRNILG_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS UPN47_class_I_Rep_3 4 513.7893676757812 2 513.790184 1025.56581 -0.2761 -0.00014186 -0.63033 -0.00032386 -0.90643 -0.00046571 513.789792828787 35.044 1.048 38.308 37.973 39.021 3.2639 135 76 2 0 0 0 0.82752 1 6534 6534 4.756 0 1 150220 56536 3709 35549 35567 64976 64976 0.05405466542742943 YKYTYIFI 8 Unmodified _YKYTYIFI_ 0 0 0 L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|35|3|sense L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|35|3|sense L1MC5_dup7141|chr8:66762540-66763884:-|1.389929007740719|0.0048566493935555|8.16|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 556.2636108398438 2 555.797143 1109.57973 NaN NaN NaN NaN NaN NaN NaN 68.152 1 71.422 70.922 71.922 3.2696 0 0 0 0.40643 1 16476 16476 2.0598 0.40713 1 56537 11693 35550 35568 64977 64977 0.029326992511641947 YKYYFSKY 8 Unmodified _YKYYFSKY_ 0 0 0 REV__L1PA12_dup294|chr2:171454975-171457074:-|1.0478713933467327|0.1121364803232106|3.22|150.0|55|3|sense REV__L1PA12_dup294|chr2:171454975-171457074:-|1.0478713933467327|0.1121364803232106|3.22|150.0|55|3|sense MSMS UPN47_class_I_Rep_1 2 581.2839965820312 2 581.2844 1160.55425 NaN NaN NaN NaN NaN NaN NaN 21.457 1 25.132 24.632 25.632 3.6749 0 0 0 0.40738 1 2331 2331 0.79363 0 1 + 56538 29065 35551 35569 64978 64978 -0.019607752712545334 YLAAKKAVW 9 Unmodified _YLAAKKAVW_ 0 0 0 nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-2|MAP7D1 nc|ENSG00000116871|Q3KQU3-2|MAP7D1 MSMS UPN46_class_I_Rep_3 1 525.3095092773438 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 100.86 1 100.86 100.36 101.36 0 0 0 0 0.35339 1 24598 24598 7.9102 3.5809 1 56539 2201 35552 35570 64979 64979 0.08459227582216045 YLAAKKAVW 9 Unmodified _YLAAKKAVW_ 0 0 0 nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-2|MAP7D1 nc|ENSG00000116871|Q3KQU3-2|MAP7D1 MSMS UPN46_class_I_Rep_3 1 525.309814453125 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 103.05 1 103.05 102.55 103.55 0 0 0 0 0.35339 1 25147 25147 7.9102 2.6795 1 56540 2201 35552 35570 64980 64980 0.08459227582216045 YLAAKKAVW 9 Unmodified _YLAAKKAVW_ 0 0 0 nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-2|MAP7D1 nc|ENSG00000116871|Q3KQU3-2|MAP7D1 MSMS UPN48_class_I_Rep_3 7 525.3094482421875 2 525.310752 1048.60695 NaN NaN NaN NaN NaN NaN NaN 98.345 1 102.25 101.75 102.75 3.9022 0 0 0 0.38478 1 23307 23307 4.3292 1.7518 1 56541 2201 35552 35570 64981 64981 0.08459227582216045 YLADIFTKL 9 Unmodified _YLADIFTKL_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MSMS UPN47_class_I_Rep_1 2 542.307861328125 2 542.307875 1082.6012 NaN NaN NaN NaN NaN NaN NaN 74.258 1 77.651 77.151 78.151 3.3937 0 0 0 0.25702 1 18270 18270 13.042 1.4022 1 56542 5689 35553 35571 64982 64982 0.06320084279900584 YLAERIPT 8 Unmodified _YLAERIPT_ 0 0 0 ENSG00000159173|ENST00000361379|TNNI1 ENSG00000159173|ENST00000361379|TNNI1 ENSG00000159173|ENST00000361379|TNNI1 MSMS UPN47_class_I_Rep_3 4 481.7685546875 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 38.157 1 41.399 40.899 41.899 3.2414 0 0 0 0.40738 1 7396 7396 0.79363 0 1 56543 3827 35554 35572 64983 64983 0.04098071414500737 YLAEVMVRL 9 Unmodified _YLAEVMVRL_ 0 0 0 nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3 nc|ENSG00000114544|Q96GZ6-6|SLC41A3 nc|ENSG00000114544|Q96GZ6-6|SLC41A3 MSMS UPN48_class_I_Rep_2 6 547.3068237304688 2 547.307352 1092.60015 NaN NaN NaN NaN NaN NaN NaN 47.768 1 51.504 51.004 52.004 3.7361 0 0 0 0.39518 1 9471 9471 1.8442 0 1 56544 2080 35555 35573 64984 64984 0.0575554663935236 YLAEYHKQV 9 Unmodified _YLAEYHKQV_ 0 0 0 REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B MSMS UPN48_class_I_Rep_1 5 575.7841796875 2 575.798206 1149.58186 NaN NaN NaN NaN NaN NaN NaN 54.346 1 57.86 57.36 58.36 3.5143 0 0 0 0.36505 1 11498 11498 7.2892 0 1 + 56545 17947 35556 35574 64985 64985 0.013051279889850775 YLAFFTIF 8 Unmodified _YLAFFTIF_ 0 0 0 REV__L1MC4_dup19046|chr14:20277395-20278336:-|1.0687801297763129|0.2952883358764985|1.86|151.0|39|1|anti-sense REV__L1MC4_dup19046|chr14:20277395-20278336:-|1.0687801297763129|0.2952883358764985|1.86|151.0|39|1|anti-sense MSMS UPN47_class_I_Rep_3 4 511.27484130859375 2 511.273304 1020.53206 NaN NaN NaN NaN NaN NaN NaN 34.106 1 37.38 36.88 37.88 3.2748 0 0 0 0.40738 1 6162 6162 0.79363 0 1 + 56546 26847 35557 35575 64986 64986 0.022610450510114788 YLAFLWDV 8 Unmodified _YLAFLWDV_ 0 0 0 ENSG00000175514|ENST00000312457|GPR152 ENSG00000175514|ENST00000312457|GPR152 ENSG00000175514|ENST00000312457|GPR152 MSMS UPN47_class_I_Rep_1 2 513.7680053710938 2 513.768386 1025.52222 NaN NaN NaN NaN NaN NaN NaN 23.465 1 27.169 26.669 27.669 3.7042 0 0 0 0.40738 1 2904 2904 0.79363 0 1 56547 4728 35558 35576 64987 64987 0.010478570456143643 YLAILKLLIF 10 Unmodified _YLAILKLLIF_ 0 0 0 REV__L1MB7_dup392|chr1:37991760-37991993:+|1.3022917667497145|0.1525911250415894|3.09|151.0|6|2|sense REV__L1MB7_dup392|chr1:37991760-37991993:+|1.3022917667497145|0.1525911250415894|3.09|151.0|6|2|sense MSMS UPN47_class_I_Rep_3 4 603.8821411132812 2 603.89666 1205.77877 NaN NaN NaN NaN NaN NaN NaN 90.644 1 94.042 93.542 94.542 3.3976 0 0 0 0.53105 1 22713 22713 0.45834 0 1 + 56548 26256 35559 35577 64988 64988 0.1841095954987395 YLAIQKPA 8 Unmodified _YLAIQKPA_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MSMS UPN47_class_I_Rep_3 4 452.2657165527344 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 19.135 1 22.489 21.989 22.989 3.3545 0 0 0 0.40738 1 1734 1734 0.79363 0 1 56549 2145 35560 35578 64989 64989 0.06739276765461 YLAKLFFK 8 Unmodified _YLAKLFFK_ 0 0 0 L1MB2_dup2408|chr5:66098916-66100189:+|2.9001983735687524|0.0243131415405727|6.9|151.0|19|2|sense;L1M4_dup9396|chr9:3477238-3479318:-|2.3734339847186945|0.1221164121458064|4.28|151.0|70|3|sense L1MB2_dup2408|chr5:66098916-66100189:+|2.9001983735687524|0.0243131415405727|6.9|151.0|19|2|sense L1MB2_dup2408|chr5:66098916-66100189:+|2.9001983735687524|0.0243131415405727|6.9|151.0|19|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 515.7982788085938 2 515.310221 1028.60589 0.15263 7.865E-05 -1.5895 -0.00081907 -1.4368 -0.00074042 515.3101552108853 59.607 0.15268 62.88 62.844 62.996 3.2731 14 11 2 0 0 0 0.72333 1 13920 13920 0.69038 0 1 41997 56550 8925 35561 35579 64990 64990 0.0927301321332834 YLAKLFFK 8 Unmodified _YLAKLFFK_ 0 0 0 L1MB2_dup2408|chr5:66098916-66100189:+|2.9001983735687524|0.0243131415405727|6.9|151.0|19|2|sense;L1M4_dup9396|chr9:3477238-3479318:-|2.3734339847186945|0.1221164121458064|4.28|151.0|70|3|sense L1MB2_dup2408|chr5:66098916-66100189:+|2.9001983735687524|0.0243131415405727|6.9|151.0|19|2|sense L1MB2_dup2408|chr5:66098916-66100189:+|2.9001983735687524|0.0243131415405727|6.9|151.0|19|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 515.310221 1028.60589 0.29355 0.00015127 -0.66747 -0.00034395 -0.37392 -0.00019268 515.8116465833491 59.598 0.066132 62.996 62.959 63.025 3.3982 0.058111 0.00063023 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 32347 56551 8925 35561 35579 0.0927301321332834 YLALFLAQ 8 Unmodified _YLALFLAQ_ 0 0 0 ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENSG00000066427.24,ATXN3,chr14,-,I7.1,92083504,92088729|55|14.02|1|intron;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3 ENST00000555816.5_1_14:92547404-92563043:-|nuORF ENST00000555816.5_1_14:92547404-92563043:-|nuORF MSMS UPN48_class_I_Rep_3 7 469.7710266113281 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 53.334 1 56.917 56.417 57.417 3.5836 0 0 0 0.40746 1 11106 11106 0.69038 0 1 56552 1021 35562 35580 64991 64991 0.05604160908217182 YLALHPATL 9 Unmodified _YLALHPATL_ 0 0 0 L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|113|2|anti-sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|113|2|anti-sense L1MA2_dup5707|chr12:4338999-4341275:+|1.6228891243448558|0.0866650641724954|4.23|151.0|113|2|anti-sense MSMS UPN47_class_I_Rep_1 2 499.786865234375 2 499.78711 997.559667 NaN NaN NaN NaN NaN NaN NaN 59.744 1 63.142 62.642 63.642 3.3982 0 0 0 0.35339 1 13895 13895 7.9102 0 1 56553 9407 35563 35581 64992 64992 0.06078948311221666 YLALLFFFF 9 Unmodified _YLALLFFFF_ 0 0 0 L1PA17_dup1064|chr4:39008616-39011501:+|2.5067382771652573|0.0223553656919194|6.81|151.0|127|1|anti-sense L1PA17_dup1064|chr4:39008616-39011501:+|2.5067382771652573|0.0223553656919194|6.81|151.0|127|1|anti-sense L1PA17_dup1064|chr4:39008616-39011501:+|2.5067382771652573|0.0223553656919194|6.81|151.0|127|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 590.8256225585938 2 590.825704 1179.63685 -0.12113 -7.1566E-05 -0.27173 -0.00016055 -0.39286 -0.00023211 590.8256968576793 13.13 0.14434 16.587 16.509 16.653 3.457 20 12 2 0 0 0 0.12551 1 259 259 0 0 1 37073 56554 14144 35564 35582 64993 64993 0.05422166527546324 YLALLFFFF 9 Unmodified _YLALLFFFF_ 0 0 0 L1PA17_dup1064|chr4:39008616-39011501:+|2.5067382771652573|0.0223553656919194|6.81|151.0|127|1|anti-sense L1PA17_dup1064|chr4:39008616-39011501:+|2.5067382771652573|0.0223553656919194|6.81|151.0|127|1|anti-sense L1PA17_dup1064|chr4:39008616-39011501:+|2.5067382771652573|0.0223553656919194|6.81|151.0|127|1|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 590.825704 1179.63685 -0.43664 -0.00025798 0.043806 2.5881E-05 -0.39283 -0.00023209 590.8257859182742 13.191 0.12359 16.564 16.535 16.658 3.3734 -0.011677 0.00062089 NaN 0 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 31589 56555 14144 35564 35582 0.05422166527546324 YLANAYVFLM 10 Unmodified _YLANAYVFLM_ 0 0 0 L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|186|3|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|186|3|anti-sense L1MA3_dup4932|chrX:55965872-55968502:+|1.0198346954577744|0.0174705864762353|5.87|150.0|186|3|anti-sense MSMS UPN48_class_I_Rep_1 5 602.8063354492188 2 602.807185 1203.59982 NaN NaN NaN NaN NaN NaN NaN 74.537 1 78.027 77.527 78.527 3.49 0 0 0 0.53105 1 17618 17618 3.5965 0.31518 1 56556 9560 35565 35583 64994 64994 0.006161269194763008 YLAPNFSF 8 Unmodified _YLAPNFSF_ 0 0 0 ENSG00000179921|ENST00000519574|GPBAR1 ENSG00000179921|ENST00000519574|GPBAR1 ENSG00000179921|ENST00000519574|GPBAR1 MSMS UPN48_class_I_Rep_1 5 479.73675537109375 2 479.737086 957.459619 NaN NaN NaN NaN NaN NaN NaN 59.585 1 63.065 62.565 63.565 3.4801 0 0 0 0.388 1 13105 13105 12.532 0 1 56557 4874 35566 35584 64995 64995 -0.020812890225670344 YLAPNTRK 8 Unmodified _YLAPNTRK_ 0 0 0 REV__MLT1C_dup11057|chrX:97480031-97480484:+|1.0803146416393774|0.003103791939063|8.44|151.0|11|2|sense REV__MLT1C_dup11057|chrX:97480031-97480484:+|1.0803146416393774|0.003103791939063|8.44|151.0|11|2|sense MSMS UPN47_class_I_Rep_1 2 481.7744445800781 2 481.774534 961.534515 NaN NaN NaN NaN NaN NaN NaN 26.795 1 30.561 30.061 31.061 3.7662 0 0 0 0.40738 1 3887 3887 0.79363 0 1 + 56558 31629 35567 35585 64996 64996 0.052208935086468955 YLAQQYLPL 9 Unmodified _YLAQQYLPL_ 0 0 0 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 ENSG00000155304|ENST00000285667|HSPA13 MULTI-MSMS UPN48_class_I_Rep_1 5 554.8050537109375 2 554.8055 1107.59645 0.54769 0.00030386 0.061764 3.4267E-05 0.60946 0.00033813 554.8055335907999 55.473 0.5831 58.982 58.694 59.277 3.5082 66 37 2 0 0 0 0.40174 1 11905 11905 7.9102 0 1 102550 56559 3698 35568 35586 64997 64997 0.04695200137143729 YLARAFTLY 9 Unmodified _YLARAFTLY_ 0 0 0 MSTD_dup5461|chr11:72974097-72974490:-|1.7952740398302192|0.0224702595605668|6.32|151.0|24|3|anti-sense MSTD_dup5461|chr11:72974097-72974490:-|1.7952740398302192|0.0224702595605668|6.32|151.0|24|3|anti-sense MSTD_dup5461|chr11:72974097-72974490:-|1.7952740398302192|0.0224702595605668|6.32|151.0|24|3|anti-sense MSMS UPN47_class_I_Rep_2 3 559.3051147460938 2 559.305667 1116.59678 NaN NaN NaN NaN NaN NaN NaN 72.177 1 75.466 74.966 75.966 3.2899 0 0 0 0.38478 1 17679 17679 4.3292 0.38484 1 56560 16598 35569 35587 64998 64998 0.04314619856995705 YLARQELTL 9 Unmodified _YLARQELTL_ 0 0 0 ENST00000318602.11_1_12:9268543-9268723:-|nuORF ENST00000318602.11_1_12:9268543-9268723:-|nuORF ENST00000318602.11_1_12:9268543-9268723:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 554.3047485351562 2 553.813856 1105.61316 -0.0072182 -3.9975E-06 -0.19772 -0.0001095 -0.20494 -0.0001135 553.8135359959416 38.539 0.67502 42.205 41.87 42.545 3.6652 62 47 2 0 0 0 0.42249 1 7399 7399 6.7232 0.51738 1 92321 56561 6144 35570 35588 64999 64999 0.06457701023077789 YLATTNLENL 10 Unmodified _YLATTNLENL_ 0 0 0 REV__L1MB5_dup4326|chrX:1523504-1523674:+|1.03194360799682|0.0063821898898084|7.34|151.0|6|3|sense REV__L1MB5_dup4326|chrX:1523504-1523674:+|1.03194360799682|0.0063821898898084|7.34|151.0|6|3|sense MSMS UPN48_class_I_Rep_2 6 576.3014526367188 2 576.300778 1150.587 NaN NaN NaN NaN NaN NaN NaN 60.191 1 63.678 63.178 64.178 3.4868 0 0 0 0.53105 1 13270 13270 13.615 5.4593 1 + 56562 26069 35571 35589 65000 65000 0.01773387060939058 YLATTVNIYF 10 Unmodified _YLATTVNIYF_ 0 0 0 REV__L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|19|2|sense REV__L1ME1_dup3100|chr2:44586232-44587177:-|1.0496848912957495|0.0761121472637846|3.79|151.0|19|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 603.3184814453125 2 602.816064 1203.61758 0.40766 0.00024575 0.24856 0.00014983 0.65622 0.00039558 602.8160823064402 62.659 0.96102 66.018 65.606 66.567 3.3595 174 63 4 0 0 0 0.56118 1 14934 14934 2.9952 0 1 574850 + 56563 27760 35572 35590 65001 65001 0.023911654459880083 YLAWFYVW 8 Unmodified _YLAWFYVW_ 0 0 0 REV__L1MA7_dup4004|chr8:47295341-47297459:-|2.2779011951330963|0.0292406973508824|6.28|151.0|137|3|anti-sense REV__L1MA7_dup4004|chr8:47295341-47297459:-|2.2779011951330963|0.0292406973508824|6.28|151.0|137|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 574.2846069335938 2 574.284203 1146.55385 0.42496 0.00024405 2.3921 0.0013738 2.8171 0.0016178 574.2854270778527 52.804 0.43719 56.323 56.089 56.527 3.5192 43 32 2 0 0 0 0.82752 1 10988 10988 2.8892 0.58649 1 120730 + 56564 24288 35573 35591 65002 65002 -0.013561502004449721 YLAWWCWG 8 Unmodified _YLAWWCWG_ 0 0 0 LTR50_dup2186|chr15:51935785-51936413:-|1.998755027887678|0.1136926965105808|4.14|151.0|13|3|sense LTR50_dup2186|chr15:51935785-51936413:-|1.998755027887678|0.1136926965105808|4.14|151.0|13|3|sense LTR50_dup2186|chr15:51935785-51936413:-|1.998755027887678|0.1136926965105808|4.14|151.0|13|3|sense MSMS UPN47_class_I_Rep_2 3 542.739501953125 2 542.739105 1083.46366 NaN NaN NaN NaN NaN NaN NaN 116.02 1 119.52 119.02 120.02 3.4965 0 0 0 0.40738 1 28311 28311 0.79363 0 1 56565 15673 35574 35592 65003 65003 -0.07473522800523824 YLCDQLHP 8 Unmodified _YLCDQLHP_ 0 0 0 REV__L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|59|3|sense REV__L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|59|3|sense MSMS UPN47_class_I_Rep_1 2 494.7188720703125 2 494.731477 987.448402 NaN NaN NaN NaN NaN NaN NaN 114.35 1 117.93 117.43 118.43 3.5809 0 0 0 0.40604 1 28254 28254 2.5775 0 1 + 56566 26186 35575 35593 65004 65004 -0.04582434388373713 YLCIHLRC 8 Unmodified _YLCIHLRC_ 0 0 0 REV__nc|ENSG00000137265|Q15306-2|IRF4 REV__nc|ENSG00000137265|Q15306-2|IRF4 MSMS UPN48_class_I_Rep_3 7 510.7593994140625 2 510.759515 1019.50448 NaN NaN NaN NaN NaN NaN NaN 53.717 1 57.301 56.801 57.801 3.5836 0 0 0 0.4032 1 11222 11222 6.3541 1.1234 1 + 56567 19223 35576 35594 65005 65005 -0.004495047525438167 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_1 2 489.8059387207031 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 70.963 1 74.335 73.835 74.835 3.3713 0 0 0 0.40738 1 17274 17274 0.79363 0 1 + 56568 25171 35577 35595 65006 65006 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_1 2 489.80596923828125 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 71.108 1 74.484 73.984 74.984 3.3751 0 0 0 0.40738 1 17318 17318 0.79363 0 1 + 56569 25171 35577 35595 65007 65007 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_1 2 489.807373046875 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 72.283 1 75.663 75.163 76.163 3.3799 0 0 0 0.40738 1 17677 17677 0.79363 0 1 + 56570 25171 35577 35595 65008 65008 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_1 2 489.8059997558594 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 72.708 1 76.088 75.588 76.588 3.3799 0 0 0 0.40738 1 17808 17808 0.79363 0 1 + 56571 25171 35577 35595 65009 65009 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_1 2 489.8063049316406 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 98.277 1 102.06 101.56 102.56 3.7861 0 0 0 0.40738 1 24333 24333 0.79363 0 1 + 56572 25171 35577 35595 65010 65010 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_2 3 489.8064880371094 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 66.242 1 69.501 69.001 70.001 3.2588 0 0 0 0.40738 1 15902 15902 0.79363 0 1 + 56573 25171 35577 35595 65011 65011 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_2 3 489.8062438964844 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 69.339 1 72.616 72.116 73.116 3.2761 0 0 0 0.40738 1 16833 16833 0.79363 0 1 + 56574 25171 35577 35595 65012 65012 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_2 3 489.805908203125 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 70.309 1 73.591 73.091 74.091 3.2828 0 0 0 0.40738 1 17124 17124 0.79363 0 1 + 56575 25171 35577 35595 65013 65013 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_2 3 489.8059387207031 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 72.847 1 76.144 75.644 76.644 3.2971 0 0 0 0.40738 1 17879 17879 0.79363 0 1 + 56576 25171 35577 35595 65014 65014 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_2 3 489.806640625 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 73.056 1 76.354 75.854 76.854 3.2971 0 0 0 0.40738 1 17942 17942 0.79363 0 1 + 56577 25171 35577 35595 65015 65015 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_3 4 489.8060607910156 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 68.282 1 71.479 70.979 71.979 3.1977 0 0 0 0.40738 1 16581 16581 0.79363 0 1 + 56578 25171 35577 35595 65016 65016 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_3 4 489.8069763183594 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 70.6 1 73.811 73.311 74.311 3.2113 0 0 0 0.40738 1 17280 17280 0.79363 0 1 + 56579 25171 35577 35595 65017 65017 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_3 4 489.8063659667969 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 84.523 1 87.885 87.385 88.385 3.3615 0 0 0 0.40738 1 21215 21215 0.79363 0 1 + 56580 25171 35577 35595 65018 65018 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_3 4 489.8061828613281 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 102.59 1 106.1 105.6 106.6 3.5057 0 0 0 0.40738 1 25212 25212 0.79363 0 1 + 56581 25171 35577 35595 65019 65019 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_3 4 489.80615234375 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 102.77 1 106.28 105.78 106.78 3.5057 0 0 0 0.40738 1 25246 25246 0.79363 0 1 + 56582 25171 35577 35595 65020 65020 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN47_class_I_Rep_3 4 489.80670166015625 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 102.94 1 106.45 105.95 106.95 3.5057 0 0 0 0.40738 1 25283 25283 0.79363 0 1 + 56583 25171 35577 35595 65021 65021 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN48_class_I_Rep_2 6 489.7972717285156 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 83.674 1 87.355 86.855 87.855 3.6814 0 0 0 0.40738 1 19893 19893 0.79363 0 1 + 56584 25171 35577 35595 65022 65022 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN48_class_I_Rep_3 7 489.806396484375 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 70.561 1 74.079 73.579 74.579 3.5185 0 0 0 0.40738 1 16332 16332 0.79363 0 1 + 56585 25171 35577 35595 65023 65023 0.10866537621404859 YLCKLLIL 8 Unmodified _YLCKLLIL_ 0 0 0 REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense REV__L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|80|2|sense MSMS UPN48_class_I_Rep_3 7 489.80633544921875 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 72.512 1 76.05 75.55 76.55 3.5373 0 0 0 0.40738 1 16906 16906 0.79363 0 1 + 56586 25171 35577 35595 65024 65024 0.10866537621404859 YLCLHEKD 8 Unmodified _YLCLHEKD_ 0 0 0 HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|203|3|anti-sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|203|3|anti-sense HERVK9-int_dup370|chrX:57204486-57207971:-|1.737496865184729|0.0807900593183052|4.43|150.0|203|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.7438659667969 2 510.744585 1019.47462 NaN NaN NaN NaN NaN NaN NaN 111.46 1 115.03 114.53 115.53 3.572 0 0 0 0.40738 1 27496 27496 0.79363 0 1 56587 8324 35578 35596 65025 65025 -0.03434165216890506 YLCLHFFMY 9 Unmodified _YLCLHFFMY_ 0 0 0 L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|346|3|anti-sense L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|346|3|anti-sense L1PA6_dup3694|chrX:78288971-78295119:-|1.887653887837116|0.0472078522583404|5.32|151.0|346|3|anti-sense MSMS UPN47_class_I_Rep_1 2 618.7802124023438 2 618.782656 1235.55076 NaN NaN NaN NaN NaN NaN NaN 45.739 1 49.439 48.939 49.939 3.6999 0 0 0 0.39326 1 9636 9636 2.3027 0 1 56588 14618 35579 35597 65026 65026 -0.05759484641112067 YLCLLVLLST 10 Unmodified _YLCLLVLLST_ 0 0 0 REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|217|2|anti-sense REV__L1MA10_dup559|chr2:138405213-138408896:-|1.6280560732359315|0.0245295368199898|6.05|151.0|217|2|anti-sense MSMS UPN48_class_I_Rep_1 5 569.3424072265625 2 569.333036 1136.65152 NaN NaN NaN NaN NaN NaN NaN 63.132 1 66.594 66.094 67.094 3.4625 0 0 0 0.53105 1 14187 14187 4.3292 0 1 + 56589 24825 35580 35598 65027 65027 0.08865870613385596 YLCRRCRY 8 Unmodified _YLCRRCRY_ 0 0 0 REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|86|3|sense REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|86|3|sense MSMS UPN47_class_I_Rep_1 2 566.7792358398438 2 566.77877 1131.54299 NaN NaN NaN NaN NaN NaN NaN 76.863 1 80.278 79.778 80.778 3.4149 0 0 0 0.40746 1 19041 19041 0.69038 0 1 + 56590 17260 35581 35599 65028 65028 -0.0175219911802742 YLCRRCRY 8 Unmodified _YLCRRCRY_ 0 0 0 REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|86|3|sense REV__BLACKJACK_dup770|chr5:78130956-78133571:-|1.4999554316521333|0.1854882302978651|3.02|151.0|86|3|sense MSMS UPN47_class_I_Rep_2 3 566.7772827148438 2 566.77877 1131.54299 NaN NaN NaN NaN NaN NaN NaN 47.396 1 50.745 50.245 51.245 3.3492 0 0 0 0.40625 1 10171 10171 2.3027 0.24298 1 + 56591 17260 35581 35599 65029 65029 -0.0175219911802742 YLCSKKKT 8 Unmodified _YLCSKKKT_ 0 0 0 REV__L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|65|3|anti-sense REV__L1MDa_dup1395|chr3:125341995-125343033:+|1.0887672735844294|0.0136696998239287|6.32|151.0|65|3|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7727355957031 2 485.773145 969.531738 NaN NaN NaN NaN NaN NaN NaN 75.869 1 79.47 78.97 79.97 3.6011 0 0 0 0.40625 1 17906 17906 2.3027 1.5091 1 + 56592 27500 35582 35600 65030 65030 0.045753020594929694 YLCVVYTMF 9 Unmodified _YLCVVYTMF_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|50|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|50|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|50|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.769287109375 2 569.769214 1137.52388 0.045568 2.5963E-05 -0.079747 -4.5437E-05 -0.034179 -1.9474E-05 569.7690273691491 36.576 0.46574 39.974 39.749 40.215 3.3988 49 33 2 0 0 0 0.48414 2 6863 6863;6907 2.3027 0 1 77098 56593 15938 35583 35601 65031;65032 65031 -0.039385932522918665 YLCVVYTMF 9 Unmodified _YLCVVYTMF_ 0 0 0 MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|50|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|50|2|sense MER4-int_dup2008|chr11:3111004-3113392:+|5.957159748556949|0.1877704093884854|4.99|151.0|50|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 570.2723999023438 2 569.769214 1137.52388 -0.084256 -4.8007E-05 0.46414 0.00026445 0.37988 0.00021644 569.7693800476803 36.772 0.53782 40.019 39.675 40.213 3.247 53 36 2 0 0 0 0.48414 3 6940 6940;6992;7032 2.3027 0 1 68444 56594 15938 35583 35601 65033;65034;65035 65033 -0.039385932522918665 YLDCGDDF 8 Unmodified _YLDCGDDF_ 0 0 0 L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|13|1|sense L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|13|1|sense L1ME1_dup27744|chr17:61176878-61177716:+|1.6503878578735045|0.064597856544888|4.68|151.0|13|1|sense MSMS UPN46_class_I_Rep_3 1 474.2823791503906 2 474.176201 946.337848 NaN NaN NaN NaN NaN NaN NaN 40.063 1 40.063 39.563 40.563 0 0 0 0 0.40738 1 7751 7751 0.79363 0 1 56595 12359 35584 35602 65036 65036 -0.13746699167256793 YLDDHIAF 8 Unmodified _YLDDHIAF_ 0 0 0 L1ME1_dup3870|chr2:111212019-111214703:-|1.400772795975445|0.2349190853265848|2.58|151.0|113|1|anti-sense L1ME1_dup3870|chr2:111212019-111214703:-|1.400772795975445|0.2349190853265848|2.58|151.0|113|1|anti-sense L1ME1_dup3870|chr2:111212019-111214703:-|1.400772795975445|0.2349190853265848|2.58|151.0|113|1|anti-sense MSMS UPN46_class_I_Rep_3 1 497.237548828125 2 497.23745 992.460347 NaN NaN NaN NaN NaN NaN NaN 65.79 1 65.79 65.29 66.29 0 0 0 0 0.39624 1 14889 14889 9.3474 0 1 56596 12404 35585 35603 65037 65037 -0.03618494373529302 YLDDPDLKY 9 Unmodified _YLDDPDLKY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS UPN47_class_I_Rep_1 2 571.2744750976562 2 571.274229 1140.53391 0.20659 0.00011802 -0.036252 -2.071E-05 0.17034 9.7311E-05 571.2741510374449 49.589 1.3702 53.248 52.848 54.218 3.6592 183 80 4 0 0 0 0.0070571 7 10761 10716;10761;10804;10834;10844;10951;11017 86.332 60.933 1 634210 56597 2682 35586 35604 65038;65039;65040;65041;65042;65043;65044 65039 -0.030739907217139262 YLDDPDLKY 9 Unmodified _YLDDPDLKY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS UPN47_class_I_Rep_2 3 571.2741088867188 2 571.274229 1140.53391 0.42993 0.00024561 -0.3675 -0.00020994 0.062427 3.5663E-05 571.2739996677267 49.826 1.2245 53.169 52.759 53.984 3.3431 175 68 4 0 0 0 0.013215 5 10862 10820;10862;10904;10946;11018 67.838 48.581 1 677730 56598 2682 35586 35604 65045;65046;65047;65048;65049 65046 -0.030739907217139262 YLDDPDLKY 9 Unmodified _YLDDPDLKY_ 0 0 0 nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS UPN47_class_I_Rep_3 4 571.2744140625 2 571.274229 1140.53391 0.48272 0.00027577 -0.23052 -0.00013169 0.2522 0.00014408 571.2740209888746 49.993 1.4903 53.22 52.765 54.256 3.2262 144 69 3 0 0 0 0.04399 4 10953 10910;10953;10994;11035 51.415 36.77 1 650010 56599 2682 35586 35604 65050;65051;65052;65053 65051 -0.030739907217139262 YLDFINHY 8 Unmodified _YLDFINHY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN47_class_I_Rep_1 2 542.759521484375 2 542.758549 1083.50255 NaN NaN NaN NaN NaN NaN NaN 60.678 1 64.06 63.56 64.56 3.3815 0 0 0 0.31372 1 14176 14176 30.225 5.5509 1 56600 5346 35587 35605 65054 65054 -0.03586518965153118 YLDFINHY 8 Unmodified _YLDFINHY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN47_class_I_Rep_1 2 542.7601318359375 2 542.758549 1083.50255 NaN NaN NaN NaN NaN NaN NaN 60.805 1 64.186 63.686 64.686 3.3815 0 0 0 0.35163 1 14213 14213 21.747 9.2151 1 56601 5346 35587 35605 65055 65055 -0.03586518965153118 YLDFINHY 8 Unmodified _YLDFINHY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS UPN47_class_I_Rep_2 3 542.7599487304688 2 542.758549 1083.50255 0.43321 0.00023513 1.4361 0.00077948 1.8694 0.0010146 542.7592986004694 61.144 0.33255 64.41 64.184 64.517 3.2654 48 30 2 0 0 0 0.82752 2 14315 14315;14353 28.487 10.352 1 122860 56602 5346 35587 35605 65056;65057 65056 -0.03586518965153118 YLDFINHY 8 Unmodified _YLDFINHY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN47_class_I_Rep_2 3 542.7578125 2 542.758549 1083.50255 NaN NaN NaN NaN NaN NaN NaN 61.249 1 64.514 64.014 65.014 3.2654 0 0 0 0.3458 1 14384 14384 23.148 5.0134 1 56603 5346 35587 35605 65058 65058 -0.03586518965153118 YLDFINHY 8 Unmodified _YLDFINHY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS UPN47_class_I_Rep_3 4 542.7590942382812 2 542.758549 1083.50255 NaN NaN NaN NaN NaN NaN NaN 61.205 1 64.37 63.87 64.87 3.1651 0 0 0 0.3458 1 14421 14421 23.148 5.0134 1 56604 5346 35587 35605 65059 65059 -0.03586518965153118 YLDFRGCMKM 10 Unmodified _YLDFRGCMKM_ 0 0 0 MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|9|1|sense MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|9|1|sense MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|9|1|sense MSMS UPN47_class_I_Rep_2 3 632.288330078125 2 632.287779 1262.56101 NaN NaN NaN NaN NaN NaN NaN 48.245 1 51.594 51.094 52.094 3.3492 0 0 0 0.53105 1 10413 10413 10.074 3.3508 1 56605 16555 35588 35606 65060 65060 -0.059772449781803516 YLDFRGCMKM 10 Unmodified _YLDFRGCMKM_ 0 0 0 MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|9|1|sense MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|9|1|sense MSTA-int_dup283|chr2:121373424-121375026:+|1.9653674560431047|0.0800617944846834|4.62|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 632.290771484375 2 632.287779 1262.56101 NaN NaN NaN NaN NaN NaN NaN 47.845 1 51.085 50.585 51.585 3.2405 0 0 0 0.53105 1 10351 10351 10.074 1.9184 1 56606 16555 35588 35606 65061 65061 -0.059772449781803516 YLDGVHTVF 9 Unmodified _YLDGVHTVF_ 0 0 0 ENSG00000131013.4,PPIL4,chr6,-,I9.1,149521172,149525142|33|7.06|1|intron;ENSG00000131013.4,PPIL4,chr6,-,I9.1,149521172,149525142|33|7.06|3|intron;ENSG00000131013.4,PPIL4,chr6,-,I9.1,149521172,149525142|33|7.06|4|intron;ENSG00000131013.4,PPIL4,chr6,-,I10.1,149517865,149521059|43|6.72|3|intron;ENSG00000131013|ENST00000253329|PPIL4 ENSG00000131013.4,PPIL4,chr6,-,I9.1,149521172,149525142|33|7.06|1|intron ENSG00000131013.4,PPIL4,chr6,-,I9.1,149521172,149525142|33|7.06|1|intron MULTI-MSMS UPN46_class_I_Rep_3 1 525.7667236328125 2 525.766374 1049.5182 0.2605 0.00013696 0.02396 1.2597E-05 0.28446 0.00014956 525.7663753476621 61.864 0.41184 61.864 61.737 62.149 0 50 38 3 0 0 0 0.066041 3 13798 13798;13835;13848 42.095 11.87 1 362240 56607 2691 35589 35607 65062;65063;65064 65062 -0.004582324480907118 YLDHNSFDY 9 Unmodified _YLDHNSFDY_ 0 0 0 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 MULTI-MSMS UPN47_class_I_Rep_2 3 587.74853515625 2 587.246003 1172.47745 0.25153 0.00014771 0.052054 3.0569E-05 0.30359 0.00017828 587.2458971537951 46.02 0.76378 49.373 49.031 49.794 3.3534 76 51 2 0 0 0 0.19147 1 9798 9798 21.537 10.423 1 138800 56608 4664 35590 35608 65065 65065 -0.10188618558368034 YLDHNSFDY 9 Unmodified _YLDHNSFDY_ 0 0 0 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 MULTI-MSMS UPN47_class_I_Rep_3 4 587.2459716796875 2 587.246003 1172.47745 0.2784 0.00016349 -0.15422 -9.0562E-05 0.12418 7.2924E-05 587.2458003116354 46.015 0.59746 49.259 49.031 49.629 3.2441 58 35 2 0 0 0 0.16559 1 9849 9849 24.021 13.197 1 123820 56609 4664 35590 35608 65066 65066 -0.10188618558368034 YLDKFYNV 8 Unmodified _YLDKFYNV_ 0 0 0 REV__nc|ENSG00000170776|Q12802-4|AKAP13 REV__nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-SECPEP UPN47_class_I_Rep_2 3 530.787353515625 2 531.26875 1060.52295 0.28895 0.00015351 -1.1868 -0.00063048 -0.8978 -0.00047698 531.2682013314275 50.79 0.8213 54.129 53.729 54.55 3.3386 72 43 2 0 0 0 0.72333 1 11163 11163 12.532 0 1 121040 + 56610 20378 35591 35609 65067 65067 -0.004893483053592718 YLDLFLSSF 9 Unmodified _YLDLFLSSF_ 0 0 0 L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|32|3|anti-sense L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|32|3|anti-sense L1MEd_dup14852|chr11:14654833-14655313:+|1.2997060456899487|0.0119991798855275|6.76|151.0|32|3|anti-sense MSMS UPN47_class_I_Rep_1 2 552.7442626953125 2 552.784233 1103.55391 NaN NaN NaN NaN NaN NaN NaN 58.834 1 62.251 61.751 62.751 3.4171 0 0 0 0.38478 1 13615 13615 4.3292 0 1 56611 13174 35592 35610 65068 65068 0.006278050088894815 YLDLNIAKK 9 Unmodified _YLDLNIAKK_ 0 0 0 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 MSMS UPN46_class_I_Rep_3 1 539.300048828125 2 539.318774 1076.623 NaN NaN NaN NaN NaN NaN NaN 60.452 1 60.452 59.952 60.952 0 0 0 0 0.38299 1 13411 13411 4.756 0 1 56612 1270 35593 35611 65069 65069 0.08774889028450161 YLDLSENRL 9 Unmodified _YLDLSENRL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS UPN47_class_I_Rep_1 2 561.79296875 2 561.793121 1121.57169 0.28675 0.00016109 0.33283 0.00018698 0.61958 0.00034807 561.7932070157237 51.618 0.56327 55.211 54.894 55.458 3.5933 51 28 2 0 0 0 0.19147 1 11373 11373 21.537 4.4241 1 124410 56613 4803 35594 35612 65070 65070 0.0157652026375672 YLDLSENRL 9 Unmodified _YLDLSENRL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-SECPEP UPN47_class_I_Rep_3 4 561.2221069335938 2 561.793121 1121.57169 0.52291 0.00029377 -0.24502 -0.00013765 0.27789 0.00015612 561.7930850433785 52.022 0.45126 55.227 55.012 55.463 3.2055 35 25 2 0 0 0 0.11642 1 11580 11580 12.241 0 1 107210 56614 4803 35594 35612 65071 65071 0.0157652026375672 YLDLSENRL 9 Unmodified _YLDLSENRL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MATCH UPN47_class_I_Rep_2 3 2 561.793121 1121.57169 0.51516 0.00028941 -0.0012524 -7.036E-07 0.5139 0.00028871 561.7930280235997 51.905 0.62885 55.238 54.891 55.52 3.3332 0.012783 1.1233E-05 NaN 17.113 42 31 2 NaN NaN NaN NaN 0 NaN NaN 0 108470 56615 4803 35594 35612 0.0157652026375672 YLDLVYKTI 9 Unmodified _YLDLVYKTI_ 0 0 0 REV__L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|46|2|sense REV__L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|46|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 564.3589477539062 2 564.320983 1126.62741 0.53612 0.00030255 -0.18408 -0.00010388 0.35204 0.00019867 564.3208464123483 63.122 0.39574 66.596 66.439 66.835 3.4738 38 33 2 0 0 0 0.1154 1 14172 14172 13.042 1.4022 1 104810 + 56616 27558 35595 35613 65072 65072 0.06916353451379109 YLDLVYKTI 9 Unmodified _YLDLVYKTI_ 0 0 0 REV__L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|46|2|sense REV__L1ME1_dup10333|chr5:122783246-122785311:-|2.112363965165141|0.1262177164834835|4.06|151.0|46|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 564.3209838867188 2 564.320983 1126.62741 0.45277 0.00025551 0.43005 0.00024268 0.88282 0.00049819 564.3212096565748 63.164 0.2528 66.673 66.53 66.783 3.5091 23 19 2 0 0 0 0.43982 1 14107 14107 5.7319 0 1 74477 + 56617 27558 35595 35613 65073 65073 0.06916353451379109 YLDNGVVFV 9 Unmodified _YLDNGVVFV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000539712.5_1_11:61089040-61094332:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS UPN47_class_I_Rep_2 3 513.2685546875 2 513.26875 1024.52295 0.096602 4.9583E-05 0.10153 5.2111E-05 0.19813 0.00010169 513.2687284500581 72.425 0.61175 75.722 75.469 76.081 3.2971 77 52 2 0 0 0 0.21527 3 17744 17744;17779;17819 19.257 0 1 143600 56618 4341 35596 35614 65074;65075;65076 65074 0.011666516946661432 YLDNVIGHSY 10 Unmodified _YLDNVIGHSY_ 0 0 0 ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6 ENST00000473131.5_1_20:5924535-5931132:-|nuORF ENST00000473131.5_1_20:5924535-5931132:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 590.7854614257812 2 590.785296 1179.55604 0.26835 0.00015854 0.53011 0.00031318 0.79846 0.00047172 590.7851847485632 50.933 0.31741 54.548 54.363 54.68 3.6149 21 15 2 0 0 0 0.54822 1 11174 11174 5.7319 1.7875 1 54029 56619 1334 35597 35615 65077 65077 -0.02655766253269576 YLDNVIGHSY 10 Unmodified _YLDNVIGHSY_ 0 0 0 ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6 ENST00000473131.5_1_20:5924535-5931132:-|nuORF ENST00000473131.5_1_20:5924535-5931132:-|nuORF MSMS UPN47_class_I_Rep_3 4 590.78515625 2 590.785296 1179.55604 NaN NaN NaN NaN NaN NaN NaN 51.469 1 54.686 54.186 55.186 3.2163 0 0 0 0.53105 1 11457 11457 8.1555 1.9497 1 56620 1334 35597 35615 65078 65078 -0.02655766253269576 YLDPAQQNL 9 Unmodified _YLDPAQQNL_ 0 0 0 ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 530.7874755859375 2 531.266739 1060.51892 0.47671 0.00025326 1.8953 0.0010069 2.372 0.0012602 531.2677628839991 50.953 0.85134 54.169 53.7 54.552 3.2163 66 44 2 0 0 0 0.087255 1 11251 11251 24.021 9.1823 1 86568 56621 6684 35598 35616 65079 65079 -0.008914377990549838 YLDPAQQNLY 10 Unmodified _YLDPAQQNLY_ 0 0 0 ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 613.3004760742188 2 612.798403 1223.58225 0.4187 0.00025658 -0.12985 -7.9572E-05 0.28885 0.00017701 612.7984041341302 57.777 0.5316 61.214 60.981 61.512 3.437 54 32 2 0 0 0 0.37703 3 13269 13262;13269;13325 21.59 14.301 1 89538 56622 6684 35599 35617 65080;65081;65082 65081 -0.020594970817910507 YLDPAQQNLY 10 Unmodified _YLDPAQQNLY_ 0 0 0 ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 613.2989501953125 2 612.798403 1223.58225 0.51922 0.00031818 -0.65503 -0.0004014 -0.13581 -8.3223E-05 612.79801653973 58.012 0.41952 61.303 61.097 61.516 3.2912 52 29 2 0 0 0 0.32913 3 13380 13380;13423;13453 26.021 10.772 1 77120 56623 6684 35599 35617 65083;65084;65085 65083 -0.020594970817910507 YLDPAQQNLY 10 Unmodified _YLDPAQQNLY_ 0 0 0 ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF ENST00000421406.1_1_1:247353282-247372753:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 612.7974853515625 2 612.798403 1223.58225 0.35159 0.00021545 -0.27655 -0.00016947 0.075033 4.598E-05 612.7982183596573 58.118 0.6464 61.287 61.011 61.657 3.1681 56 40 2 0 0 0 0.47804 5 13420 13413;13420;13471;13485;13528 13.615 6.8779 1 74786 56624 6684 35599 35617 65086;65087;65088;65089;65090 65087 -0.020594970817910507 YLDRQNPDLY 10 Unmodified _YLDRQNPDLY_ 0 0 0 REV__ENSG00000189144|ENST00000536220|ZNF573 REV__ENSG00000189144|ENST00000536220|ZNF573 MULTI-MSMS UPN47_class_I_Rep_1 2 648.814453125 2 648.814584 1295.61462 0.20392 0.00013231 -1.2542 -0.00081372 -1.0502 -0.00068141 648.8144810689075 45.887 0.17009 49.587 49.489 49.659 3.6999 14 8 2 0 0 0 0.55724 1 9676 9676 4.5289 0 1 43351 + 56625 21001 35600 35618 65091 65091 -0.021367096788026174 YLDTINSFS 9 Unmodified _YLDTINSFS_ 0 0 0 nc|ENSG00000168883|Q53GS9-2|USP39 nc|ENSG00000168883|Q53GS9-2|USP39 nc|ENSG00000168883|Q53GS9-2|USP39 MSMS UPN48_class_I_Rep_2 6 530.2537841796875 2 530.253297 1058.49204 NaN NaN NaN NaN NaN NaN NaN 32.058 1 35.699 35.199 36.199 3.641 0 0 0 0.39518 1 4904 4904 1.8442 0 1 56626 16745 35601 35619 65092 65092 -0.03486546410226765 YLDTKRLAF 9 Unmodified _YLDTKRLAF_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 MULTI-SECPEP UPN48_class_I_Rep_2 6 563.29541015625 2 563.816399 1125.61824 0.5517 0.00031106 -0.039343 -2.2182E-05 0.51236 0.00028888 563.8163957066465 61.312 0.10365 64.79 64.702 64.806 3.4785 10 9 2 0 0 0 0.11775 1 13610 13610 9.3474 0 1 114090 56627 727 35602 35620 65093 65093 0.060460048857066795 YLDTKRLAF 9 Unmodified _YLDTKRLAF_ 0 0 0 ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 ENSG00000007174|ENST00000262442|DNAH9 MULTI-MATCH UPN48_class_I_Rep_3 7 2 563.816399 1125.61824 0.43605 0.00024585 0.51081 0.000288 0.94686 0.00053386 563.8165829660965 61.449 0.14335 64.962 64.879 65.023 3.5129 0.085694 0.00034404 NaN 9.3474 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 67034 56628 727 35602 35620 0.060460048857066795 YLDYDDTRY 9 Unmodified _YLDYDDTRY_ 0 0 0 ENST00000535343.5_1_12:132632219-132636084:+|nuORF;ENSG00000184967|ENST00000330579|NOC4L ENST00000535343.5_1_12:132632219-132636084:+|nuORF ENST00000535343.5_1_12:132632219-132636084:+|nuORF MSMS UPN47_class_I_Rep_1 2 612.2650146484375 2 612.264393 1222.51423 NaN NaN NaN NaN NaN NaN NaN 44.14 1 47.835 47.335 48.335 3.6951 0 0 0 0.32573 1 9148 9148 9.3831 1.473 1 56629 5075 35603 35621 65094 65094 -0.08812366732468035 YLDYEKEEVE 10 Unmodified _YLDYEKEEVE_ 0 0 0 nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B MULTI-MSMS UPN47_class_I_Rep_3 4 439.53326416015625 3 439.534602 1315.58198 -1.0232 -0.00044973 -0.98125 -0.00043129 -2.0044 -0.00088102 439.5340809742952 27.508 0.30904 30.851 30.704 31.013 3.3422 40 25 2 0 0 0 0.56107 1 4191 4191 3.0723 0.44103 1 46004 56630 3507 35604 35622 65095 65095 -0.06318961592319283 YLDYIRRY 8 Unmodified _YLDYIRRY_ 0 0 0 REV__L1ME3F_dup3428|chr12:120884121-120884358:+|1.024564739284633|0.0029781642098591|8.43|151.0|9|2|anti-sense REV__L1ME3F_dup3428|chr12:120884121-120884358:+|1.024564739284633|0.0029781642098591|8.43|151.0|9|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.3062744140625 2 581.306198 1160.59784 0.50128 0.0002914 0.19077 0.00011089 0.69205 0.00040229 581.3064269470433 59.68 0.55677 62.953 62.7 63.257 3.2731 60 36 2 0 0 0 0.82752 1 13891 13891 2.5775 0 1 103080 + 56631 28176 35605 35623 65096 65096 0.023968342258967823 YLEELSQRY 9 Unmodified _YLEELSQRY_ 0 0 0 ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO ENSG00000094975|ENST00000263688|SUCO ENSG00000094975|ENST00000263688|SUCO MSMS UPN47_class_I_Rep_3 4 600.799072265625 2 600.798403 1199.58225 NaN NaN NaN NaN NaN NaN NaN 47.708 1 50.948 50.448 51.448 3.2405 0 0 0 0.16861 1 10316 10316 18.373 11.271 1 56632 1404 35606 35624 65097 65097 -0.00955497081804424 YLEETSIRY 9 Unmodified _YLEETSIRY_ 0 0 0 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-MSMS UPN47_class_I_Rep_1 2 587.2933959960938 2 587.292953 1172.57135 0.12353 7.2547E-05 0.1914 0.00011241 0.31492 0.00018495 587.2929548921572 45.938 0.65414 49.638 49.327 49.981 3.6999 58 38 2 0 0 0 0.038999 5 9705 9652;9666;9705;9740;9754 53.404 30.668 1 152650 56633 3813 35607 35625 65098;65099;65100;65101;65102 65100 -0.008028994560845604 YLEETSIRY 9 Unmodified _YLEETSIRY_ 0 0 0 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-MSMS UPN47_class_I_Rep_2 3 587.2930297851562 2 587.292953 1172.57135 0.26591 0.00015617 -0.16891 -9.9202E-05 0.097 5.6967E-05 587.2927324712435 46.24 0.6637 49.592 49.33 49.994 3.3519 75 43 2 0 0 0 0.033731 5 9844 9801;9844;9883;9889;9929 55.503 28.619 1 133550 56634 3813 35607 35625 65103;65104;65105;65106;65107 65104 -0.008028994560845604 YLEETSIRY 9 Unmodified _YLEETSIRY_ 0 0 0 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-MSMS UPN47_class_I_Rep_3 4 587.29296875 2 587.292953 1172.57135 0.29455 0.00017299 0.029845 1.7528E-05 0.32439 0.00019051 587.7944959105804 46.397 0.644 49.64 49.322 49.966 3.2439 64 40 2 0 0 0 0.088679 3 9891 9891;9932;9985 36.506 16.053 1 154920 56635 3813 35607 35625 65108;65109;65110 65108 -0.008028994560845604 YLELNTFVG 9 Unmodified _YLELNTFVG_ 0 0 0 REV__LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|84|3|anti-sense REV__LTR12C_dup1766|chrY:19045657-19047135:-|1.0795379011025883|0.0655328636989012|4.04|88.0|84|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 528.7755737304688 2 528.274032 1054.53351 0.33426 0.00017658 -0.033743 -1.7825E-05 0.30052 0.00015876 528.273936346334 91.029 0.30746 91.029 90.951 91.258 0 48 28 3 0 0 0 0.28552 1 22013 22013 14.838 0 1 718470 + 56636 30808 35608 35626 65111 65111 0.008426343491009902 YLEQLHQLY 9 Unmodified _YLEQLHQLY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_1 2 603.8115234375 2 603.811313 1205.60807 0.3904 0.00023573 0.051816 3.1287E-05 0.44222 0.00026702 603.8112470361646 56.684 1.2043 60.141 59.775 60.979 3.4572 266 100 4 0 0 0 0.0057802 7 12926 12882;12926;12963;13001;13040;13079;13113 140.63 58.743 1 1990600 56637 4382 35609 35627 65112;65113;65114;65115;65116;65117;65118 65113 0.013493971604930266 YLEQLHQLY 9 Unmodified _YLEQLHQLY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_2 3 603.8113403320312 2 603.811313 1205.60807 0.51873 0.00031322 -0.04622 -2.7908E-05 0.47251 0.00028531 603.8112142783139 56.848 1.3743 60.149 59.8 61.174 3.3009 269 118 3 0 0 0 0.0069771 7 13020 12980;13020;13059;13097;13134;13175;13214 117.76 42.832 1 1253300 56638 4382 35609 35627 65119;65120;65121;65122;65123;65124;65125 65120 0.013493971604930266 YLEQLHQLY 9 Unmodified _YLEQLHQLY_ 0 0 0 nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-2|STAT3 nc|ENSG00000168610|P40763-2|STAT3 MULTI-MSMS UPN47_class_I_Rep_3 4 603.8114624023438 2 603.811313 1205.60807 0.37971 0.00022928 0.13235 7.9917E-05 0.51207 0.00030919 603.811271036221 57.099 1.1835 60.267 59.843 61.027 3.1681 236 103 4 0 0 0 0.0050147 8 13131 13066;13097;13131;13166;13205;13242;13286;13366 140.63 65.704 1 1304800 56639 4382 35609 35627 65126;65127;65128;65129;65130;65131;65132;65133 65128 0.013493971604930266 YLERYKVQN 9 Unmodified _YLERYKVQN_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-SECPEP UPN48_class_I_Rep_1 5 404.55047607421875 3 404.8839 1211.62987 -0.075667 -3.0636E-05 2.0316 0.00082255 1.9559 0.00079192 404.884323700064 30.653 0.055668 34.195 34.164 34.22 3.542 8 5 2 0 0 0 0.12509 1 4430 4430 1.1933 0.9575 1 17138 56640 834 35610 35628 65134 65134 0.032522019090492904 YLESVALHY 9 Unmodified _YLESVALHY_ 0 0 0 REV__MER21C_dup1327|chr4:37671882-37672444:-|2.059343600197857|0.0656615672966588|4.97|151.0|17|3|sense REV__MER21C_dup1327|chr4:37671882-37672444:-|2.059343600197857|0.0656615672966588|4.97|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 547.7787475585938 2 547.779482 1093.54441 0.49516 0.00027124 -0.25842 -0.00014156 0.23674 0.00012968 547.7791218995653 54.425 0.53412 57.743 57.49 58.024 3.3187 35 26 2 0 0 0 0.32219 1 12293 12293 12.532 0 1 85556 + 56641 31222 35611 35629 65135 65135 0.0013803672338781325 YLFCPIYVGH 10 Unmodified _YLFCPIYVGH_ 0 0 0 REV__L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|117|2|anti-sense REV__L1PA16_dup10920|chr12:96382185-96384735:+|2.6930528799809523|0.0429010692630371|5.97|151.0|117|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.3001098632812 2 606.299527 1210.5845 0.60123 0.00036453 0.21086 0.00012784 0.81209 0.00049237 606.2994315781973 73.763 0.36208 77.313 77.216 77.578 3.5505 47 43 2 0 0 0 0.55873 1 17256 17256 4.3292 2.0265 1 142290 + 56642 29321 35612 35630 65136 65136 -0.012367398777087146 YLFDLIWILEL 11 Unmodified _YLFDLIWILEL_ 0 0 0 REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|70|3|anti-sense REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|70|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 480.2728271484375 3 479.939123 1436.79554 0.34334 0.00016478 -0.55178 -0.00026482 -0.20843 -0.00010004 479.9389144080194 12.808 0.33392 16.462 16.271 16.605 3.6549 67 45 2 0 0 0 0.68081 1 146 146 0.45452 0.046251 1 63453 + 56643 23335 35613 35631 65137 65137 0.09461415645205307 YLFDLIWILEL 11 Unmodified _YLFDLIWILEL_ 0 0 0 REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|70|3|anti-sense REV__HAL1_dup11266|chr8:26314133-26315323:-|2.2140867663287653|0.09517975616553|4.54|151.0|70|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 480.2734069824219 3 479.939123 1436.79554 0.0966 4.6362E-05 -0.4481 -0.00021506 -0.3515 -0.0001687 479.9389711419062 12.672 0.29972 16.203 16.047 16.347 3.531 84 41 3 0 0 0 0.68081 1 118 118 0.45452 0.046251 1 47680 + 56644 23335 35613 35631 65138 65138 0.09461415645205307 YLFESSHFF 9 Unmodified _YLFESSHFF_ 0 0 0 L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|113|3|anti-sense L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|113|3|anti-sense L1M2_dup7990|chr15:64240261-64242241:+|1.97167925108064|0.0360065225432802|5.78|150.0|113|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 588.771728515625 2 588.771657 1175.52876 0.57632 0.00033932 -0.050058 -2.9473E-05 0.52626 0.00030985 588.7714673370109 61.08 0.6103 64.554 64.316 64.926 3.4737 114 54 3 0 0 0 0.26948 1 13493 13493 15.847 0 1 236020 56645 8711 35614 35632 65139 65139 -0.05198249793670584 YLFFKFQQL 9 Unmodified _YLFFKFQQL_ 0 0 0 REV__Tigger1_dup5225|chr6:135328266-135330633:+|1.206020938935542|0.1335087502173522|3.18|151.0|45|3|sense REV__Tigger1_dup5225|chr6:135328266-135330633:+|1.206020938935542|0.1335087502173522|3.18|151.0|45|3|sense MSMS UPN48_class_I_Rep_3 7 617.3377685546875 2 617.336967 1232.65938 NaN NaN NaN NaN NaN NaN NaN 53.617 1 57.201 56.701 57.701 3.5836 0 0 0 0.40038 1 11194 11194 0.6015 0 1 + 56646 32464 35615 35633 65140 65140 0.0523576592520385 YLFFPKCL 8 Unmodified _YLFFPKCL_ 0 0 0 nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 MSMS UPN48_class_I_Rep_3 7 515.7757568359375 2 515.775157 1029.53576 NaN NaN NaN NaN NaN NaN NaN 72.189 1 75.716 75.216 76.216 3.5266 0 0 0 0.40404 1 16812 16812 5.2307 0 1 56647 16842 35616 35634 65141 65141 0.02217391553199377 YLFIHAFI 8 Unmodified _YLFIHAFI_ 0 0 0 AluSz_dup43422|chr8:25273317-25273642:+|1.0837211793928323|0.0299988461174666|5.17|150.0|13|1|anti-sense AluSz_dup43422|chr8:25273317-25273642:+|1.0837211793928323|0.0299988461174666|5.17|150.0|13|1|anti-sense AluSz_dup43422|chr8:25273317-25273642:+|1.0837211793928323|0.0299988461174666|5.17|150.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 512.2847900390625 2 512.286746 1022.55894 NaN NaN NaN NaN NaN NaN NaN 63.759 1 67.114 66.614 67.614 3.3557 0 0 0 0.4032 1 15106 15106 6.3541 0 1 56648 351 35617 35635 65142 65142 0.0485615366218326 YLFIHVYP 8 Unmodified _YLFIHVYP_ 0 0 0 L1ME4b_dup1944|chr2:55042125-55042638:+|1.2161397277070995|0.0212880716627854|5.84|151.0|36|3|anti-sense L1ME4b_dup1944|chr2:55042125-55042638:+|1.2161397277070995|0.0212880716627854|5.84|151.0|36|3|anti-sense L1ME4b_dup1944|chr2:55042125-55042638:+|1.2161397277070995|0.0212880716627854|5.84|151.0|36|3|anti-sense MSMS UPN47_class_I_Rep_3 4 526.283935546875 2 526.284203 1050.55385 NaN NaN NaN NaN NaN NaN NaN 32.278 1 35.564 35.064 36.064 3.2867 0 0 0 0.40581 1 5611 5611 2.8892 0.31174 1 56649 12907 35618 35636 65143 65143 0.030598497995470098 YLFIIKYE 8 Unmodified _YLFIIKYE_ 0 0 0 ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 MSMS UPN47_class_I_Rep_1 2 544.7620849609375 2 544.804968 1087.59538 NaN NaN NaN NaN NaN NaN NaN 76.536 1 79.951 79.451 80.451 3.4149 0 0 0 0.4032 1 18946 18946 6.3541 0 1 56650 3132 35619 35637 65144 65144 0.0550898576821055 YLFKRPGL 8 Unmodified _YLFKRPGL_ 0 0 0 REV__ITSN1|p.H1465Y|1|0.07|ENSG00000205726|chr21:33882294-33882294|C/T|missense_variant REV__ITSN1|p.H1465Y|1|0.07|ENSG00000205726|chr21:33882294-33882294|C/T|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 497.29718017578125 2 497.297645 992.580737 0.15146 7.5319E-05 0.061874 3.077E-05 0.21333 0.00010609 497.2974998812254 64.382 0.47791 67.738 67.334 67.812 3.3557 88 45 2 0 0 0 0.82752 1 15206 15206 2.5775 0 1 186450 + 56651 23987 35620 35638 65145 65145 0.08414958410764939 YLFLNNYKM 9 Unmodified _YLFLNNYKM_ 0 0 0 REV__L1ME3G_dup3313|chr3:121832627-121832827:-|1.3157386708888872|0.2171833993137422|2.6|151.0|11|2|anti-sense REV__L1ME3G_dup3313|chr3:121832627-121832827:-|1.3157386708888872|0.2171833993137422|2.6|151.0|11|2|anti-sense MSMS UPN48_class_I_Rep_2 6 603.3071899414062 2 603.30481 1204.59507 NaN NaN NaN NaN NaN NaN NaN 74.379 1 77.969 77.469 78.469 3.59 0 0 0 0.39428 1 17501 17501 2.0598 0.21551 1 + 56652 28197 35621 35639 65146 65146 0.0009524277670607262 YLFLSTHFS 9 Unmodified _YLFLSTHFS_ 0 0 0 L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|282|2|anti-sense L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|282|2|anti-sense L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|282|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.7823486328125 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 66.512 1 69.999 69.499 70.499 3.4866 0 0 0 0.38478 1 15201 15201 4.3292 0.73274 1 56653 14625 35622 35640 65147 65147 -0.002736594140287707 YLFLSTHFS 9 Unmodified _YLFLSTHFS_ 0 0 0 L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|282|2|anti-sense L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|282|2|anti-sense L1PA6_dup4191|chr10:73021589-73027607:+|2.151013964646462|0.1193508732619583|4.17|150.0|282|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.780517578125 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 66.525 1 70.011 69.511 70.511 3.4866 0 0 0 0.39518 1 15205 15205 1.8442 0 1 56654 14625 35622 35640 65148 65148 -0.002736594140287707 YLFLTFPR 8 Unmodified _YLFLTFPR_ 0 0 0 ENST00000474738.1_1_7:6624591-6628538:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4 ENST00000474738.1_1_7:6624591-6628538:+|nuORF ENST00000474738.1_1_7:6624591-6628538:+|nuORF MSMS UPN47_class_I_Rep_1 2 528.7528076171875 2 528.797478 1055.5804 NaN NaN NaN NaN NaN NaN NaN 65.334 1 68.69 68.19 69.19 3.3557 0 0 0 0.40738 1 15577 15577 0.79363 0 1 56655 2959 35623 35641 65149 65149 0.05483538690896239 YLFLWKFF 8 Unmodified _YLFLWKFF_ 0 0 0 L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|419|3|anti-sense L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|419|3|anti-sense L1PB1_dup5902|chr7:91818992-91825525:-|1.0594807124354069|0.188237895992668|2.49|151.0|419|3|anti-sense MSMS UPN46_class_I_Rep_3 1 582.3179931640625 2 582.318046 1162.62154 NaN NaN NaN NaN NaN NaN NaN 74.765 1 74.765 74.265 75.265 0 0 0 0 0.40746 1 17354 17354 0.69038 0 1 56656 15158 35624 35642 65150 65150 0.04673299730347935 YLFNIDLQ 8 Unmodified _YLFNIDLQ_ 0 0 0 L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|36|1|anti-sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|36|1|anti-sense L1ME3A_dup7265|chr7:156890036-156890909:+|1.2352817247395322|0.026357094266494|5.55|151.0|36|1|anti-sense MSMS UPN48_class_I_Rep_3 7 513.7268676757812 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 69.346 1 72.859 72.359 73.359 3.5128 0 0 0 0.40292 1 15968 15968 6.7232 0 1 56657 12685 35625 35643 65151 65151 0.011666516946661432 YLFNRNPFPI 10 Unmodified _YLFNRNPFPI_ 0 0 0 L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|155|2|anti-sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|155|2|anti-sense L1PA13_dup2925|chr5:116244685-116247973:+|5.616883770786386|0.0673411955227269|6.38|151.0|155|2|anti-sense MSMS UPN46_class_I_Rep_3 1 640.84375 2 640.842948 1279.67134 NaN NaN NaN NaN NaN NaN NaN 51.501 1 51.501 51.001 52.001 0 0 0 0 0.53105 1 10953 10953 1.6526 0 1 56658 13744 35626 35644 65152 65152 0.04269382668371691 YLFQEMKY 8 Unmodified _YLFQEMKY_ 0 0 0 REV__MER4B-int_dup1030|chr11:57723903-57724552:+|1.4883830390522816|0.0305304631186982|5.61|151.0|31|1|anti-sense REV__MER4B-int_dup1030|chr11:57723903-57724552:+|1.4883830390522816|0.0305304631186982|5.61|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 561.2711791992188 2 561.270435 1120.52632 NaN NaN NaN NaN NaN NaN NaN 54.053 1 57.581 57.081 58.081 3.5278 0 0 0 0.40604 1 12162 12162 2.5775 0 1 + 56659 31354 35627 35645 65153 65153 -0.029124215229558104 YLFSKKKKK 9 Unmodified _YLFSKKKKK_ 0 0 0 L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|160|1|anti-sense L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|160|1|anti-sense L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|160|1|anti-sense MSMS UPN46_class_I_Rep_3 1 585.3748168945312 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 45.11 1 45.11 44.61 45.61 0 0 0 0 0.40038 1 9142 9142 0.6015 0.076735 1 56660 13996 35628 35646 65154 65154 0.1555973408749196 YLFVILMVL 9 Unmodified _YLFVILMVL_ 0 0 0 REV__L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|232|3|anti-sense REV__L1PA7_dup11760|chr15:51568815-51573077:+|1.9321011860088864|0.0923968503547578|4.39|151.0|232|3|anti-sense MSMS UPN48_class_I_Rep_2 6 555.7238159179688 2 555.835214 1109.65588 NaN NaN NaN NaN NaN NaN NaN 14.906 1 18.56 18.06 19.06 3.6535 0 0 0 0.4029 1 529 529 0 0 1 + 56661 30001 35629 35647 65155 65155 0.10543379826981436 YLFVRFEF 8 Unmodified _YLFVRFEF_ 0 0 0 REV__L1MD_dup7566|chr16:47278989-47280485:-|1.2398178549776038|0.0426731243423375|4.86|151.0|77|2|anti-sense REV__L1MD_dup7566|chr16:47278989-47280485:-|1.2398178549776038|0.0426731243423375|4.86|151.0|77|2|anti-sense MSMS UPN48_class_I_Rep_3 7 560.8056030273438 2 560.794935 1119.57532 NaN NaN NaN NaN NaN NaN NaN 72.543 1 76.08 75.58 76.58 3.5373 0 0 0 0.36148 1 16915 16915 19.439 3.5918 1 + 56662 27283 35630 35648 65156 65156 0.020312348282914172 YLFWKKKKN 9 Unmodified _YLFWKKKKN_ 0 0 0 Tigger2_dup1624|chr9:124963788-124965254:-|1.1908686379356008|0.0250923711891835|5.57|151.0|20|2|sense Tigger2_dup1624|chr9:124963788-124965254:-|1.1908686379356008|0.0250923711891835|5.57|151.0|20|2|sense Tigger2_dup1624|chr9:124963788-124965254:-|1.1908686379356008|0.0250923711891835|5.57|151.0|20|2|sense MSMS UPN47_class_I_Rep_3 4 627.8709716796875 2 627.871508 1253.72846 NaN NaN NaN NaN NaN NaN NaN 110.56 1 114.09 113.59 114.59 3.529 0 0 0 0.39428 1 27131 27131 2.0598 0.40713 1 56663 33289 35631 35649 65157 65157 0.11174849944745802 YLFYITYLL 9 Unmodified _YLFYITYLL_ 0 0 0 REV__L1MCc_dup25|chr1:42266288-42268755:+|1.0002865386025903|0.0251035150454737|5.32|151.0|116|2|anti-sense REV__L1MCc_dup25|chr1:42266288-42268755:+|1.0002865386025903|0.0251035150454737|5.32|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_3 7 604.8346557617188 2 604.833726 1207.6529 NaN NaN NaN NaN NaN NaN NaN 43.732 1 47.371 46.871 47.871 3.6385 0 0 0 0.39326 1 8174 8174 2.3027 0 1 + 56664 27244 35632 35650 65158 65158 0.05737827973803178 YLFYLFAI 8 Unmodified _YLFYLFAI_ 0 0 0 L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|49|1|anti-sense L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|49|1|anti-sense L1MC4_dup2734|chr2:88597912-88598918:+|1.2850841748492872|0.0488980079066207|4.72|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_1 2 525.2904052734375 2 525.288954 1048.56336 NaN NaN NaN NaN NaN NaN NaN 46.533 1 50.233 49.733 50.733 3.6999 0 0 0 0.4032 1 9878 9878 6.3541 0 1 56665 11481 35633 35651 65159 65159 0.04101618085087466 YLFYTPTA 8 Unmodified _YLFYTPTA_ 0 0 0 L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|37|1|sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|37|1|sense L1PB1_dup5070|chr6:73091514-73095806:-|1.7258301114997048|0.0090525717552607|7.57|150.0|37|1|sense MSMS UPN47_class_I_Rep_3 4 488.2431640625 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 72.287 1 75.514 75.014 76.014 3.2271 0 0 0 0.40738 1 17786 17786 0.79363 0 1 56666 15135 35634 35652 65160 65160 -0.013324222254027518 YLGAVISAVS 10 Unmodified _YLGAVISAVS_ 0 0 0 ENST00000450185.5_1_2:73225858-73250341:-|nuORF;ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000474528.5_1_2:73172153-73286292:-|nuORF ENST00000450185.5_1_2:73225858-73250341:-|nuORF ENST00000450185.5_1_2:73225858-73250341:-|nuORF MSMS UPN46_class_I_Rep_3 1 490.44970703125 2 490.276575 978.538597 NaN NaN NaN NaN NaN NaN NaN 69.439 1 69.439 68.939 69.939 0 0 0 0 0.53105 1 15911 15911 13.906 0.86358 1 56667 3342 35635 35653 65161 65161 0.04846938211710494 YLGDVSHLF 9 Unmodified _YLGDVSHLF_ 0 0 0 REV__L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|228|1|anti-sense REV__L1PA7_dup5483|chr6:104756575-104762708:+|1.5175201432140977|0.2169484384396898|2.81|151.0|228|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 525.745849609375 2 525.766374 1049.5182 0.2605 0.00013696 0.02396 1.2597E-05 0.28446 0.00014956 525.7663753476621 61.864 0.41184 61.864 61.737 62.149 0 50 38 3 0 0 0 0.17468 1 13788 13788 23.148 0 1 362240 + 56668 30131 35636 35654 65162 65162 -0.004582324480907118 YLGFAPGYFL 10 Unmodified _YLGFAPGYFL_ 0 0 0 REV__L1M5_dup51052|chr19:34204148-34204426:+|1.1406172692733842|0.0604388564100671|4.24|151.0|21|3|anti-sense REV__L1M5_dup51052|chr19:34204148-34204426:+|1.1406172692733842|0.0604388564100671|4.24|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_2 6 574.294189453125 2 574.294768 1146.57498 NaN NaN NaN NaN NaN NaN NaN 63.012 1 66.486 65.986 66.986 3.4738 0 0 0 0.53105 1 14132 14132 4.3292 0.38484 1 + 56669 24693 35637 35655 65163 65163 0.007558151084140263 YLGFAPGYFL 10 Unmodified _YLGFAPGYFL_ 0 0 0 REV__L1M5_dup51052|chr19:34204148-34204426:+|1.1406172692733842|0.0604388564100671|4.24|151.0|21|3|anti-sense REV__L1M5_dup51052|chr19:34204148-34204426:+|1.1406172692733842|0.0604388564100671|4.24|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_3 7 574.292724609375 2 574.294768 1146.57498 NaN NaN NaN NaN NaN NaN NaN 62.873 1 66.383 65.883 66.883 3.5091 0 0 0 0.53105 1 14010 14010 7.9102 0.62092 1 + 56670 24693 35637 35655 65164 65164 0.007558151084140263 YLGFNKQNEL 10 Unmodified _YLGFNKQNEL_ 0 0 0 REV__nc|ENSG00000265817|O95073-2|FSBP REV__nc|ENSG00000265817|O95073-2|FSBP MULTI-MSMS UPN48_class_I_Rep_1 5 613.3135986328125 2 613.31422 1224.61389 0.49212 0.00030183 -0.22464 -0.00013777 0.26749 0.00016405 613.3141092736018 55.831 0.6267 59.333 59.017 59.643 3.5014 73 43 2 0 0 0 0.44401 1 11918 11918 16.149 1.3108 1 220700 + 56671 21406 35638 35656 65165 65165 0.010564956721282215 YLGFNKQNEL 10 Unmodified _YLGFNKQNEL_ 0 0 0 REV__nc|ENSG00000265817|O95073-2|FSBP REV__nc|ENSG00000265817|O95073-2|FSBP MULTI-MSMS UPN48_class_I_Rep_3 7 613.314208984375 2 613.31422 1224.61389 0.4548 0.00027894 -0.22844 -0.00014011 0.22636 0.00013883 613.3140292063115 55.737 0.68965 59.292 58.931 59.621 3.5554 78 47 2 0 0 0 0.32646 2 11813 11813;11907 26.268 5.8145 1 266470 + 56672 21406 35638 35656 65166;65167 65166 0.010564956721282215 YLGGPRGV 8 Unmodified _YLGGPRGV_ 0 0 0 ENSG00000101191|ENST00000395343|DIDO1 ENSG00000101191|ENST00000395343|DIDO1 ENSG00000101191|ENST00000395343|DIDO1 MSMS UPN48_class_I_Rep_3 7 409.7312316894531 2 409.729595 817.444637 NaN NaN NaN NaN NaN NaN NaN 55.306 1 58.862 58.362 59.362 3.5554 0 0 0 0.40625 1 11711 11711 2.3027 0 1 56673 1555 35639 35657 65168 65168 0.02861263900092581 YLGIRTPR 8 Unmodified _YLGIRTPR_ 0 0 0 REV__ENSG00000177238|ENST00000322122|TRIM72 REV__ENSG00000177238|ENST00000322122|TRIM72 MSMS UPN46_class_I_Rep_3 1 488.2805480957031 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 73.616 1 73.616 73.116 74.116 0 0 0 0 0.40738 1 17071 17071 0.79363 0 1 + 56674 20613 35640 35658 65169 65169 0.07784886262618329 YLGLLLQQ 8 Unmodified _YLGLLLQQ_ 0 0 0 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 MULTI-MSMS UPN46_class_I_Rep_3 1 474.2821960449219 2 474.28166 946.548768 0.25157 0.00011932 1.8143 0.0008605 2.0659 0.00097981 474.28209203055746 113.73 0.080597 113.73 113.72 113.8 0 12 7 3 0 0 0 0.82752 1 28094 28094 0.79363 0 1 962960 56675 2205 35641 35659 65170 65170 0.07335545936962262 YLGLLLQQ 8 Unmodified _YLGLLLQQ_ 0 0 0 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 474.28166 946.548768 0.30273 0.00014358 2.0836 0.0009882 2.3863 0.0011318 474.2821800570814 110.56 0.29385 114.09 113.97 114.27 3.5271 0.13344 0.00012941 NaN 0.79363 77 38 3 NaN NaN NaN NaN 0 NaN NaN 0 230910 56676 2205 35641 35659 0.07335545936962262 YLGLLLQQ 8 Unmodified _YLGLLLQQ_ 0 0 0 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 474.28166 946.548768 0.08377 3.9731E-05 1.8832 0.00089315 1.9669 0.00093288 474.28223857187567 110.52 0.52762 114.05 113.96 114.49 3.529 0.094258 -6.0705E-05 NaN 0.79363 126 69 3 NaN NaN NaN NaN 0 NaN NaN 0 164670 56677 2205 35641 35659 0.07335545936962262 YLGLQNKVF 9 Unmodified _YLGLQNKVF_ 0 0 0 REV__L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|155|2|anti-sense REV__L1MD1_dup1509|chr3:184880098-184882969:-|1.355685118729964|0.0377296690552518|5.17|151.0|155|2|anti-sense MSMS UPN48_class_I_Rep_1 5 541.30615234375 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 61.19 1 64.658 64.158 65.158 3.4678 0 0 0 0.1074 1 13594 13594 23.148 0 1 + 56678 27296 35642 35660 65171 65171 0.059706198569983826 YLGPPRLFQ 9 Unmodified _YLGPPRLFQ_ 0 0 0 nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L MSMS UPN47_class_I_Rep_3 4 545.804443359375 2 545.805834 1089.59712 NaN NaN NaN NaN NaN NaN NaN 26.101 1 29.449 28.949 29.949 3.3478 0 0 0 0.38478 1 3770 3770 4.3292 0 1 56679 1138 35643 35661 65172 65172 0.05590039576827621 YLGQELQY 8 Unmodified _YLGQELQY_ 0 0 0 ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 MULTI-MSMS UPN47_class_I_Rep_2 3 507.2503356933594 2 507.250557 1012.48656 0.098836 5.0134E-05 0.07208 3.6563E-05 0.17092 8.6697E-05 507.2504872625123 67.287 0.3288 70.551 70.423 70.751 3.2636 31 25 2 0 0 0 0.82752 1 16201 16201 19.257 0 1 77059 56680 3432 35644 35662 65173 65173 -0.0191822520206415 YLGQELQY 8 Unmodified _YLGQELQY_ 0 0 0 ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 MULTI-MATCH UPN47_class_I_Rep_1 2 2 507.250557 1012.48656 0.17616 8.9359E-05 0.12975 6.5814E-05 0.30591 0.00015517 507.25049790307156 67.039 0.40237 70.4 70.334 70.736 3.3611 -0.075529 2.8345E-05 NaN 19.257 36 30 2 NaN NaN NaN NaN 0 NaN NaN 0 60252 56681 3432 35644 35662 -0.0191822520206415 YLGRGLYAL 9 Unmodified _YLGRGLYAL_ 0 0 0 ENST00000355957.9_1_20:57226753-57226939:+|nuORF ENST00000355957.9_1_20:57226753-57226939:+|nuORF ENST00000355957.9_1_20:57226753-57226939:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 513.2936401367188 2 513.292559 1024.57057 0.4154 0.00021322 0.35636 0.00018292 0.77177 0.00039614 513.2923794830361 58.967 0.69399 62.465 62.218 62.912 3.4987 71 45 2 0 0 0 0.20276 1 12899 12899 20.454 2.3186 1 108840 56682 6285 35645 35663 65174 65174 0.05926350685513171 YLGTLKVL 8 Unmodified _YLGTLKVL_ 0 0 0 ENSG00000164114|ENST00000311277|MAP9 ENSG00000164114|ENST00000311277|MAP9 ENSG00000164114|ENST00000311277|MAP9 MULTI-MSMS UPN47_class_I_Rep_1 2 453.78643798828125 2 453.786579 905.558604 0.034927 1.585E-05 -1.8636 -0.00084566 -1.8286 -0.00082981 453.7855845356099 55.516 1.1009 58.995 58.664 59.765 3.4785 77 63 2 0 0 0 0.82752 1 12609 12609 8.5933 0 1 215430 56683 4083 35646 35664 65175 65175 0.10204733942327948 YLGTLKVL 8 Unmodified _YLGTLKVL_ 0 0 0 ENSG00000164114|ENST00000311277|MAP9 ENSG00000164114|ENST00000311277|MAP9 ENSG00000164114|ENST00000311277|MAP9 MSMS UPN47_class_I_Rep_3 4 453.78466796875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 43.671 1 46.913 46.413 47.413 3.2419 0 0 0 0.40643 1 9084 9084 2.0598 0 1 56684 4083 35646 35664 65176 65176 0.10204733942327948 YLGVFKFL 8 Unmodified _YLGVFKFL_ 0 0 0 L1M4c_dup997|chr5:75444845-75445493:-|1.375589972525538|0.0116699388037457|6.88|151.0|44|3|anti-sense L1M4c_dup997|chr5:75444845-75445493:-|1.375589972525538|0.0116699388037457|6.88|151.0|44|3|anti-sense L1M4c_dup997|chr5:75444845-75445493:-|1.375589972525538|0.0116699388037457|6.88|151.0|44|3|anti-sense MSMS UPN48_class_I_Rep_2 6 493.7344665527344 2 493.789121 985.56369 NaN NaN NaN NaN NaN NaN NaN 73.278 1 76.855 76.355 77.355 3.5779 0 0 0 0.40738 1 17199 17199 0.79363 0 1 56685 9085 35647 35665 65177 65177 0.07033037804944797 YLGWHKLN 8 Unmodified _YLGWHKLN_ 0 0 0 REV__nc|ENSG00000184343|Q9UPE1-2|SRPK3 REV__nc|ENSG00000184343|Q9UPE1-2|SRPK3 MSMS UPN48_class_I_Rep_1 5 515.7755126953125 2 515.777077 1029.5396 NaN NaN NaN NaN NaN NaN NaN 72.364 1 75.837 75.337 76.337 3.4732 0 0 0 0.39624 1 16977 16977 9.3474 0.75416 1 + 56686 20815 35648 35666 65178 65178 0.026011973712684267 YLGYKTAQSE 10 Unmodified _YLGYKTAQSE_ 0 0 0 MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|218|3|anti-sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|218|3|anti-sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|218|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 581.3018188476562 2 580.285128 1158.5557 0.54919 0.00031869 2.0269 0.0011762 2.5761 0.0014949 580.7881586724172 69.186 0.088165 72.695 72.66 72.748 3.5094 10 5 3 0 0 0 0.4561 1 15923 15923 15.248 1.3424 1 257370 56687 15967 35649 35667 65179 65179 -0.017231859731282384 YLHALRIPM 9 Unmodified _YLHALRIPM_ 0 0 0 nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A MSMS UPN46_class_I_Rep_3 1 557.3150634765625 2 557.315512 1112.61647 NaN NaN NaN NaN NaN NaN NaN 73.849 1 73.849 73.349 74.349 0 0 0 0 0.39428 1 17129 17129 2.0598 0 1 56688 5487 35650 35668 65180 65180 0.06466672596070566 YLHCFLSLY 9 Unmodified _YLHCFLSLY_ 0 0 0 MamRep434_dup24|chr1:27465176-27465545:+|1.016985139643642|0.01111128287226|6.52|151.0|24|1|anti-sense MamRep434_dup24|chr1:27465176-27465545:+|1.016985139643642|0.01111128287226|6.52|151.0|24|1|anti-sense MamRep434_dup24|chr1:27465176-27465545:+|1.016985139643642|0.01111128287226|6.52|151.0|24|1|anti-sense MSMS UPN47_class_I_Rep_3 4 579.7877807617188 2 579.786253 1157.55795 NaN NaN NaN NaN NaN NaN NaN 42.61 1 45.849 45.349 46.349 3.2394 0 0 0 0.19137 1 8760 8760 16.942 2.3606 1 56689 15746 35651 35669 65181 65181 -0.014524287690164783 YLHCVHIHF 9 Unmodified _YLHCVHIHF_ 0 0 0 REV__L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|169|1|anti-sense REV__L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|169|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.7783203125 2 584.789661 1167.56477 NaN NaN NaN NaN NaN NaN NaN 16.38 1 16.38 15.88 16.88 0 0 0 0 0.40038 1 1112 1112 0.6015 0 1 + 56690 24994 35652 35670 65182 65182 -0.012310710977999406 YLHDEPCQKE 10 Unmodified _YLHDEPCQKE_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MSMS UPN47_class_I_Rep_3 4 631.2765502929688 2 631.27952 1260.54449 NaN NaN NaN NaN NaN NaN NaN 49.672 1 52.898 52.398 53.398 3.2262 0 0 0 0.53105 1 10907 10907 2.9952 0.93549 1 + 56691 17651 35653 35671 65183 65183 -0.0753633133895164 YLHEGYRL 8 Unmodified _YLHEGYRL_ 0 0 0 L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|137|3|anti-sense L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|137|3|anti-sense L1MEc_dup4412|chr4:74185180-74187127:+|1.7323491256931187|0.110559054299407|3.97|151.0|137|3|anti-sense MSMS UPN47_class_I_Rep_2 3 525.7723388671875 2 525.771991 1049.52943 NaN NaN NaN NaN NaN NaN NaN 40.266 1 43.637 43.137 44.137 3.3712 0 0 0 0.40625 1 7998 7998 2.3027 0 1 56692 13108 35654 35672 65184 65184 0.006645896460440781 YLHFKGGF 8 Unmodified _YLHFKGGF_ 0 0 0 Ricksha_0_dup63|chr2:174603812-174604692:-|1.1446474181394155|0.1414493733483385|3.02|151.0|54|3|anti-sense Ricksha_0_dup63|chr2:174603812-174604692:-|1.1446474181394155|0.1414493733483385|3.02|151.0|54|3|anti-sense Ricksha_0_dup63|chr2:174603812-174604692:-|1.1446474181394155|0.1414493733483385|3.02|151.0|54|3|anti-sense MSMS UPN48_class_I_Rep_1 5 484.75341796875 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 21.529 1 25.082 24.582 25.582 3.5533 0 0 0 0.40798 1 1978 1978 0 0 1 56693 32826 35655 35673 65185 65185 0.006541234512496885 YLHFKGGF 8 Unmodified _YLHFKGGF_ 0 0 0 Ricksha_0_dup63|chr2:174603812-174604692:-|1.1446474181394155|0.1414493733483385|3.02|151.0|54|3|anti-sense Ricksha_0_dup63|chr2:174603812-174604692:-|1.1446474181394155|0.1414493733483385|3.02|151.0|54|3|anti-sense Ricksha_0_dup63|chr2:174603812-174604692:-|1.1446474181394155|0.1414493733483385|3.02|151.0|54|3|anti-sense MSMS UPN48_class_I_Rep_1 5 484.7534484863281 2 484.75307 967.491587 NaN NaN NaN NaN NaN NaN NaN 23.161 1 26.722 26.222 27.222 3.5605 0 0 0 0.40798 1 2372 2372 0 0 1 56694 32826 35655 35673 65186 65186 0.006541234512496885 YLHGDLAL 8 Unmodified _YLHGDLAL_ 0 0 0 REV__ENSG00000176595|ENST00000320248|KBTBD11 REV__ENSG00000176595|ENST00000320248|KBTBD11 MULTI-MSMS UPN47_class_I_Rep_3 4 451.24169921875 2 451.242535 900.470518 -0.70276 -0.00031711 -0.074639 -3.368E-05 -0.77739 -0.00035079 451.2424156763279 40.184 0.46395 43.421 43.203 43.667 3.2372 53 29 2 0 0 0 0.82752 3 7979 7979;8037;8078 10.183 0 1 48565 + 56695 20593 35656 35674 65187;65188;65189 65187 0.01630113351700402 YLHGIPIY 8 Unmodified _YLHGIPIY_ 0 0 0 REV__L1M5_dup41060|chr13:28152712-28153151:+|1.780586005761728|0.0124388071764939|7.16|151.0|22|1|anti-sense REV__L1M5_dup41060|chr13:28152712-28153151:+|1.780586005761728|0.0124388071764939|7.16|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_3 4 488.26873779296875 2 488.268553 974.522553 NaN NaN NaN NaN NaN NaN NaN 64.147 1 67.321 66.821 67.821 3.1741 0 0 0 0.4032 1 15321 15321 6.3541 1.1234 1 + 56696 24673 35657 35675 65190 65190 0.03427276765467013 YLHHFRHQ 8 Unmodified _YLHHFRHQ_ 0 0 0 MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|53|3|anti-sense MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|53|3|anti-sense MER21C_dup1140|chr3:138723940-138724841:-|1.1537605093160392|0.0541257615548782|4.41|151.0|53|3|anti-sense MSMS UPN48_class_I_Rep_3 7 569.2891845703125 2 569.288674 1136.5628 NaN NaN NaN NaN NaN NaN NaN 30.094 1 33.82 33.32 34.32 3.7259 0 0 0 0.40738 1 4299 4299 0.79363 0 1 56697 15882 35658 35676 65191 65191 -2.3637913955099066E-05 YLHIGLKPR 9 Unmodified _YLHIGLKPR_ 0 0 0 ENSG00000196338.13,NLGN3,chrX,+,I7.1,71167801,71169253|63|8.54|1|intron;ENSG00000196338.13,NLGN3,chrX,+,I6.1,71164329,71167010|81|9.32|1|intron;ENSG00000196338|ENST00000358741|NLGN3;ENSG00000169760|ENST00000695368|NLGN1;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000196338|Q9NZ94-2|NLGN3;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;nc|ENSG00000196338|Q9NZ94-3|NLGN3;ENSG00000196338.13,NLGN3,chrX,+,I4.1,71153537,71155213|47|6.5|2|intron;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENSG00000196338.13,NLGN3,chrX,+,I4.1,71153537,71155213|47|6.5|3|intron;ENSG00000196338.13,NLGN3,chrX,+,I6.1,71164329,71167010|81|9.32|2|intron;ENSG00000196338.13,NLGN3,chrX,+,I6.1,71164329,71167010|81|9.32|7|intron;nc|ENSG00000169760|Q8N2Q7|NLGN1 ENSG00000196338.13,NLGN3,chrX,+,I7.1,71167801,71169253|63|8.54|1|intron ENSG00000196338.13,NLGN3,chrX,+,I7.1,71167801,71169253|63|8.54|1|intron MSMS UPN46_class_I_Rep_3 1 548.8353881835938 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 32.369 1 32.369 31.869 32.869 0 0 0 0 0.40038 1 5529 5529 0.6015 0 1 56698 3453 35659 35677 65192 65192 0.11129721222141598 YLHIQQLL 8 Unmodified _YLHIQQLL_ 0 0 0 REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 MSMS UPN47_class_I_Rep_3 4 514.2695922851562 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 28.439 1 31.772 31.272 32.272 3.3337 0 0 0 0.40738 1 4458 4458 0.79363 0 1 + 56699 20650 35660 35678 65193 65193 0.073986372025729 YLHIRTIL 8 Unmodified _YLHIRTIL_ 0 0 0 L1ME3Cz_dup7910|chr10:100160954-100161752:+|1.2236730495223025|0.0789685729519396|3.95|150.0|47|2|anti-sense L1ME3Cz_dup7910|chr10:100160954-100161752:+|1.2236730495223025|0.0789685729519396|3.95|150.0|47|2|anti-sense L1ME3Cz_dup7910|chr10:100160954-100161752:+|1.2236730495223025|0.0789685729519396|3.95|150.0|47|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 514.31689453125 2 514.816202 1027.61785 -0.19246 -9.9082E-05 3.862 0.0019882 3.6696 0.0018891 514.8181171665184 28.338 0.10148 32.104 32.07 32.171 3.7662 9 8 2 0 0 0 0.72333 1 4358 4358 0.79363 0 1 23268 56700 12785 35661 35679 65194 65194 0.10514629956537647 YLHIYLHK 8 Unmodified _YLHIYLHK_ 0 0 0 L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|25|2|sense L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|25|2|sense L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|25|2|sense MSMS UPN47_class_I_Rep_1 2 543.8056640625 2 543.808377 1085.6022 NaN NaN NaN NaN NaN NaN NaN 32.895 1 36.608 36.108 37.108 3.7131 0 0 0 0.39624 1 5721 5721 9.3474 0 1 56701 13368 35662 35680 65195 65195 0.06282343439443139 YLHIYLHK 8 Unmodified _YLHIYLHK_ 0 0 0 L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|25|2|sense L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|25|2|sense L1MEg_dup13904|chr20:6021367-6022335:-|1.5199050163716454|0.0835304973152191|4.19|151.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 543.8067626953125 2 543.808377 1085.6022 NaN NaN NaN NaN NaN NaN NaN 33.151 1 36.606 36.106 37.106 3.4547 0 0 0 0.40404 1 5836 5836 5.2307 0 1 56702 13368 35662 35680 65196 65196 0.06282343439443139 YLHLCIKQK 9 Unmodified _YLHLCIKQK_ 0 0 0 REV__L1M5_dup51870|chr20:8401920-8402552:-|1.4727019290718657|0.0046340219987393|8.31|150.0|43|2|anti-sense REV__L1M5_dup51870|chr20:8401920-8402552:-|1.4727019290718657|0.0046340219987393|8.31|150.0|43|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 573.8311157226562 2 573.328619 1144.64269 0.48144 0.00027602 2.0548 0.0011781 2.5362 0.0014541 573.3297928343618 87.601 0.1454 91.329 91.268 91.413 3.7279 18 16 2 0 0 0 0.48643 1 20854 20854 2.0598 0 1 58515 + 56703 24696 35663 35681 65197 65197 0.0761494176758788 YLHLCIKQK 9 Unmodified _YLHLCIKQK_ 0 0 0 REV__L1M5_dup51870|chr20:8401920-8402552:-|1.4727019290718657|0.0046340219987393|8.31|150.0|43|2|anti-sense REV__L1M5_dup51870|chr20:8401920-8402552:-|1.4727019290718657|0.0046340219987393|8.31|150.0|43|2|anti-sense MSMS UPN48_class_I_Rep_3 7 573.330322265625 2 573.328619 1144.64269 NaN NaN NaN NaN NaN NaN NaN 88.171 1 91.981 91.481 92.481 3.8104 0 0 0 0.39428 1 20928 20928 2.0598 0 1 + 56704 24696 35663 35681 65198 65198 0.0761494176758788 YLHLKTLYI 9 Unmodified _YLHLKTLYI_ 0 0 0 REV__L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|4|1|sense REV__L1PB4_dup7354|chr21:33240829-33241192:+|2.3729806993614817|0.1906106942829431|3.64|151.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 582.345458984375 2 582.344792 1162.67503 NaN NaN NaN NaN NaN NaN NaN 88.484 1 92.107 91.607 92.607 3.6229 0 0 0 0.40038 1 21229 21229 0.6015 0 1 + 56705 30623 35664 35682 65199 65199 0.10020052442246197 YLHPIINFI 9 Unmodified _YLHPIINFI_ 0 0 0 L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|2|1|sense L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|2|1|sense L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 565.3229370117188 2 565.32386 1128.63317 0.4683 0.00026474 0.29405 0.00016623 0.76235 0.00043097 565.3238608870724 71.605 0.42007 75.071 74.932 75.352 3.466 46 37 2 0 0 0 0.32219 2 16763 16733;16763 12.532 0 1 103710 56706 12582 35665 35683 65200;65201 65201 0.0739949675371463 YLHPIINFI 9 Unmodified _YLHPIINFI_ 0 0 0 L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|2|1|sense L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|2|1|sense L1ME3_dup2118|chr3:177161837-177162439:+|1.7606641225070097|0.0156727106467513|6.81|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 565.32386 1128.63317 0.49666 0.00028077 -0.24493 -0.00013847 0.25173 0.00014231 565.3238143202193 71.233 0.093567 74.751 74.703 74.797 3.5185 -0.15989 -0.0004779 NaN 12.532 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 44948 56707 12582 35665 35683 0.0739949675371463 YLHPKVRN 8 Unmodified _YLHPKVRN_ 0 0 0 REV__AluSx_dup130|chr1:1870685-1870956:+|1.0649907099017122|0.0083683665216846|6.99|151.0|2|1|sense REV__AluSx_dup130|chr1:1870685-1870956:+|1.0649907099017122|0.0083683665216846|6.99|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 513.7781372070312 2 513.795801 1025.57705 NaN NaN NaN NaN NaN NaN NaN 68.924 1 72.434 71.934 72.934 3.5094 0 0 0 0.4032 1 15839 15839 6.3541 0 1 + 56708 17136 35666 35684 65202 65202 0.0652828863690047 YLHPVSPK 8 Unmodified _YLHPVSPK_ 0 0 0 L1MCa_dup3055|chr7:37815550-37816502:-|1.214473041425718|0.1146992201122554|3.4|151.0|5|1|sense L1MCa_dup3055|chr7:37815550-37816502:-|1.214473041425718|0.1146992201122554|3.4|151.0|5|1|sense L1MCa_dup3055|chr7:37815550-37816502:-|1.214473041425718|0.1146992201122554|3.4|151.0|5|1|sense MSMS UPN46_class_I_Rep_3 1 470.7640075683594 2 470.766178 939.517802 NaN NaN NaN NaN NaN NaN NaN 22.38 1 22.38 21.88 22.88 0 0 0 0 0.40604 1 2647 2647 2.5775 0.27475 1 56709 11792 35667 35685 65203 65203 0.04562392622710831 YLHQGAGQ 8 Unmodified _YLHQGAGQ_ 0 0 0 REV__nc|ENSG00000080824|P07900-2|HSP90AA1 REV__nc|ENSG00000080824|P07900-2|HSP90AA1 MSMS UPN48_class_I_Rep_1 5 437.2154846191406 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 74.425 1 77.915 77.415 78.415 3.49 0 0 0 0.40581 1 17588 17588 2.8892 0 1 + 56710 31944 35668 35686 65204 65204 -0.027245144849416647 YLHSDPLR 8 Unmodified _YLHSDPLR_ 0 0 0 REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF MSMS UPN47_class_I_Rep_3 4 500.7842102050781 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 35.488 1 38.743 38.243 39.243 3.2547 0 0 0 0.4044 1 6579 6579 4.756 0 1 + 56711 22997 35669 35687 65205 65205 0.014003031290030776 YLHSRDVV 8 Unmodified _YLHSRDVV_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000480878.6_1_19:40741944-40744877:-|nuORF;ENST00000580878.1_1_19:40741997-40745051:-|nuORF;ENST00000483166.5_1_19:40743617-40745051:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MSMS UPN48_class_I_Rep_2 6 494.76470947265625 2 494.764166 987.513779 NaN NaN NaN NaN NaN NaN NaN 75.811 1 79.412 78.912 79.912 3.6011 0 0 0 0.40738 1 17890 17890 0.79363 0 1 56712 1721 35670 35688 65206 65206 0.01952303128996391 YLHVWNDN 8 Unmodified _YLHVWNDN_ 0 0 0 L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|115|2|anti-sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|115|2|anti-sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|115|2|anti-sense MSMS UPN48_class_I_Rep_3 7 530.791748046875 2 530.745973 1059.47739 NaN NaN NaN NaN NaN NaN NaN 21.234 1 24.9 24.4 25.4 3.6667 0 0 0 0.40738 1 1958 1958 0.79363 0 1 56713 8912 35671 35689 65207 65207 -0.04996573767721202 YLHYSQYY 8 Unmodified _YLHYSQYY_ 0 0 0 L1PA15_dup743|chr2:68213747-68215298:+|4.776334815082297|0.0427213418850039|6.8|151.0|31|2|sense L1PA15_dup743|chr2:68213747-68215298:+|4.776334815082297|0.0427213418850039|6.8|151.0|31|2|sense L1PA15_dup743|chr2:68213747-68215298:+|4.776334815082297|0.0427213418850039|6.8|151.0|31|2|sense MSMS UPN47_class_I_Rep_2 3 568.771240234375 2 568.756007 1135.49746 NaN NaN NaN NaN NaN NaN NaN 24.393 1 27.859 27.359 28.359 3.4655 0 0 0 0.40738 1 3224 3224 0.79363 0 1 56714 13981 35672 35690 65208 65208 -0.06486822827764627 YLIALSQLY 9 Unmodified _YLIALSQLY_ 0 0 0 REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.8093872070312 2 542.307875 1082.6012 0.41612 0.00022567 0.77557 0.0004206 1.1917 0.00064627 542.3080701652334 74.701 0.15057 78.095 77.985 78.135 3.3937 20 12 2 0 0 0 0.28552 1 18401 18401 14.838 4.0143 1 50661 + 56715 26017 35673 35691 65209 65209 0.06320084279923321 YLIALSQLY 9 Unmodified _YLIALSQLY_ 0 0 0 REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.8106689453125 2 542.307875 1082.6012 0.41631 0.00022577 0.31245 0.00016945 0.72876 0.00039521 542.3077896165559 74.768 0.059631 78.162 78.135 78.195 3.3937 8 5 2 0 0 0 0.42249 1 18422 18422 6.7232 0 1 65798 + 56716 26017 35673 35691 65210 65210 0.06320084279923321 YLIALSQLY 9 Unmodified _YLIALSQLY_ 0 0 0 REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 542.307875 1082.6012 0.41612 0.00022567 0.77557 0.0004206 1.1917 0.00064627 542.3080701652334 74.701 0.15057 78.095 77.985 78.135 3.3937 0.092835 -0.00021372 NaN 14.838 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 50661 + 56717 26017 35673 35691 0.06320084279923321 YLIALSQLY 9 Unmodified _YLIALSQLY_ 0 0 0 REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense REV__L1MB4_dup746|chr2:61358433-61359653:+|2.028792853599715|0.0320200131657707|5.99|151.0|85|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 542.307875 1082.6012 0.41127 0.00022304 1.0361 0.00056191 1.4474 0.00078495 542.3083579247458 74.596 0.3413 77.909 77.708 78.049 3.3127 -0.092835 6.8908E-05 NaN 14.838 56 37 2 NaN NaN NaN NaN 0 NaN NaN 0 80197 + 56718 26017 35673 35691 0.06320084279923321 YLIAPTLWW 9 Unmodified _YLIAPTLWW_ 0 0 0 REV__AluJr_dup70830|chr17:16020687-16020986:-|1.387437425453211|0.2820755681378373|2.3|151.0|1|1|sense REV__AluJr_dup70830|chr17:16020687-16020986:-|1.387437425453211|0.2820755681378373|2.3|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 581.816650390625 2 581.81841 1161.62227 NaN NaN NaN NaN NaN NaN NaN 66.059 1 69.545 69.045 70.045 3.4866 0 0 0 0.35339 1 15063 15063 7.9102 1.7044 1 + 56719 17052 35674 35692 65211 65211 0.04792094379422451 YLICHHTY 8 Unmodified _YLICHHTY_ 0 0 0 L1MEg_dup12510|chr15:101211338-101211926:+|1.0446080911846505|0.0208340837319628|5.65|151.0|37|3|anti-sense L1MEg_dup12510|chr15:101211338-101211926:+|1.0446080911846505|0.0208340837319628|5.65|151.0|37|3|anti-sense L1MEg_dup12510|chr15:101211338-101211926:+|1.0446080911846505|0.0208340837319628|5.65|151.0|37|3|anti-sense MSMS UPN48_class_I_Rep_3 7 525.3037109375 2 525.247295 1048.48004 NaN NaN NaN NaN NaN NaN NaN 40.218 1 43.869 43.369 44.369 3.6509 0 0 0 0.40581 1 7126 7126 2.8892 0 1 56720 13360 35675 35693 65212 65212 -0.04226441634409639 YLIDPFHPF 9 Unmodified _YLIDPFHPF_ 0 0 0 REV__L1PB1_dup12317|chr19:23351736-23352493:+|1.2346367744336904|0.3221471258515125|1.94|150.0|14|2|sense REV__L1PB1_dup12317|chr19:23351736-23352493:+|1.2346367744336904|0.3221471258515125|1.94|150.0|14|2|sense MSMS UPN48_class_I_Rep_1 5 574.7932739257812 2 574.792392 1147.57023 NaN NaN NaN NaN NaN NaN NaN 63.161 1 66.624 66.124 67.124 3.4625 0 0 0 0.381 1 14196 14196 5.2307 2.3415 1 + 56721 30332 35676 35694 65213 65213 0.002349309656665355 YLIEALYL 8 Unmodified _YLIEALYL_ 0 0 0 L1MA7_dup6397|chr12:34028205-34028854:-|1.3409665550769314|0.2453068166792016|2.45|151.0|28|1|anti-sense L1MA7_dup6397|chr12:34028205-34028854:-|1.3409665550769314|0.2453068166792016|2.45|151.0|28|1|anti-sense L1MA7_dup6397|chr12:34028205-34028854:-|1.3409665550769314|0.2453068166792016|2.45|151.0|28|1|anti-sense MSMS UPN46_class_I_Rep_3 1 499.2834167480469 2 499.283869 996.553185 NaN NaN NaN NaN NaN NaN NaN 91.19 1 91.19 90.69 91.69 0 0 0 0 0.40738 1 22015 22015 0.79363 0 1 56722 10027 35677 35695 65214 65214 0.05477010359822998 YLIFAIYI 8 Unmodified _YLIFAIYI_ 0 0 0 REV__MER2_dup6000|chr10:97387029-97387303:-|2.024133564567353|0.0099584997812322|7.67|151.0|10|3|sense REV__MER2_dup6000|chr10:97387029-97387303:-|2.024133564567353|0.0099584997812322|7.67|151.0|10|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 507.7944641113281 2 508.296779 1014.57901 0.18814 9.5632E-05 -0.25292 -0.00012856 -0.06478 -3.2928E-05 508.2966371426387 77.623 0.44859 80.954 80.911 81.36 3.3315 67 45 2 0 0 0 0.72333 1 19336 19336 2.8892 2.8892 1 184140 + 56723 31146 35678 35696 65215 65215 0.07229904602115766 YLIFGLAVVL 10 Unmodified _YLIFGLAVVL_ 0 0 0 REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|136|3|anti-sense REV__L1MEc_dup15818|chr15:72766723-72768410:+|3.0487048339689093|0.0701853879654792|5.44|150.0|136|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.8461303710938 2 554.344261 1106.67397 0.48904 0.0002711 -0.17299 -9.5895E-05 0.31605 0.0001752 554.3441098720408 77.008 0.38299 80.619 80.405 80.788 3.6116 71 38 2 0 0 0 0.49259 1 18216 18216 12.532 0 1 216780 + 56724 28395 35679 35697 65216 65216 0.12489838073315696 YLIFVVRF 8 Unmodified _YLIFVVRF_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;chr1:247416193-247418229|148|17.97|0.47|5.26|+|ENST00000391828|NLRP3,NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS UPN48_class_I_Rep_1 5 528.8165283203125 2 528.81567 1055.61679 NaN NaN NaN NaN NaN NaN NaN 89.365 1 92.99 92.49 93.49 3.6255 0 0 0 0.40738 1 21457 21457 0.79363 0 1 56725 568 35680 35698 65217 65217 0.09120415587608477 YLIGCIYL 8 Unmodified _YLIGCIYL_ 0 0 0 ENST00000396267.1_2_17:8279279-8279477:-|nuORF ENST00000396267.1_2_17:8279279-8279477:-|nuORF ENST00000396267.1_2_17:8279279-8279477:-|nuORF MSMS UPN48_class_I_Rep_3 7 478.77764892578125 2 479.259339 956.504126 NaN NaN NaN NaN NaN NaN NaN 38.059 1 41.718 41.218 42.218 3.6595 0 0 0 0.40581 1 6493 6493 2.8892 0 1 56726 6565 35681 35699 65218 65218 0.024133987992399852 YLIHIPVSI 9 Unmodified _YLIHIPVSI_ 0 0 0 REV__L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|11|1|anti-sense REV__L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|11|1|anti-sense MSMS UPN47_class_I_Rep_3 4 527.8190307617188 2 527.81841 1053.62227 NaN NaN NaN NaN NaN NaN NaN 76.59 1 79.859 79.359 80.359 3.269 0 0 0 0.1074 1 19047 19047 23.148 0 1 + 56727 27469 35682 35700 65219 65219 0.09760094379430484 YLIIDITTT 9 Unmodified _YLIIDITTT_ 0 0 0 ENST00000576713.6_1_17:79534551-79539120:-|nuORF;ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4 ENST00000576713.6_1_17:79534551-79539120:-|nuORF ENST00000576713.6_1_17:79534551-79539120:-|nuORF MSMS UPN47_class_I_Rep_2 3 526.7966918945312 2 526.79734 1051.58013 NaN NaN NaN NaN NaN NaN NaN 17.849 1 21.236 20.736 21.736 3.387 0 0 0 0.4029 1 1408 1408 0 0 1 56728 4952 35683 35701 65220 65220 0.056400741803599885 YLIISDAEH 9 Unmodified _YLIISDAEH_ 0 0 0 L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|254|2|anti-sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|254|2|anti-sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|254|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7694091796875 2 530.769114 1059.52368 NaN NaN NaN NaN NaN NaN NaN 49.21 1 52.928 52.428 53.428 3.7175 0 0 0 0.2088 1 9918 9918 15.847 3.3156 1 56729 15051 35684 35702 65221 65221 -0.0037055365630749293 YLIIYLLWV 9 Unmodified _YLIIYLLWV_ 0 0 0 REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|192|1|anti-sense REV__L1PA3_dup2342|chr4:163573330-163577904:-|5.391494727922462|0.0961246027157607|5.81|151.0|192|1|anti-sense MSMS UPN47_class_I_Rep_2 3 598.3582153320312 2 598.359911 1194.70527 NaN NaN NaN NaN NaN NaN NaN 52.513 1 55.847 55.347 56.347 3.3332 0 0 0 0.3264 1 11718 11718 9.3474 0 1 + 56730 29520 35685 35703 65222 65222 0.11570411107413747 YLIKLAWLYL 10 Unmodified _YLIKLAWLYL_ 0 0 0 REV__nc|ENSG00000138814|Q08209-5|PPP3CA REV__nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS UPN48_class_I_Rep_3 7 648.3941040039062 2 648.391742 1294.76893 0.65347 0.00042371 3.792 0.0024587 4.4455 0.0028824 648.3945815837096 102.37 0.064865 106.15 106.12 106.19 3.776 10 7 2 0 0 0 0.55983 1 24195 24195 3.9444 1.4459 1 278220 + 56731 19298 35686 35704 65223 65223 0.13333771544512274 YLILIALPM 9 Unmodified _YLILIALPM_ 0 0 0 REV__L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|50|2|anti-sense REV__L1MEc_dup1933|chr2:23844240-23845153:+|1.6213487201488672|0.0142034963403663|6.83|151.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 524.0121459960938 2 523.819564 1045.62458 0.29643 0.00015528 -0.038134 -1.9976E-05 0.2583 0.0001353 523.8194025773926 87.652 0.32776 91.271 91.175 91.502 3.6187 44 31 2 0 0 0 0.50582 1 21055 21055 0 0 1 132720 + 56732 28430 35687 35705 65224 65224 0.10358806792851283 YLILIKLFLV 10 Unmodified _YLILIKLFLV_ 0 0 0 L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense L1MD1_dup476|chr2:20734061-20736159:-|1.4840525914546407|0.0337187153878417|5.46|151.0|136|3|anti-sense MSMS UPN46_class_I_Rep_3 1 618.33837890625 2 617.91231 1233.81007 NaN NaN NaN NaN NaN NaN NaN 45.901 1 45.901 45.401 46.401 0 0 0 0 0.53105 1 9370 9370 0 0 1 56733 11951 35688 35706 65225 65225 0.20251532583961307 YLILPFKR 8 Unmodified _YLILPFKR_ 0 0 0 REV__nc|ENSG00000123643|Q7Z2H8-3|SLC36A1 REV__nc|ENSG00000123643|Q7Z2H8-3|SLC36A1 MSMS UPN47_class_I_Rep_1 2 525.3284301757812 2 525.328945 1048.64334 NaN NaN NaN NaN NaN NaN NaN 91.087 1 94.792 94.292 95.292 3.7053 0 0 0 0.40738 1 22744 22744 0.79363 0 1 + 56734 18789 35689 35707 65226 65226 0.1209610447895102 YLIMGGDDGD 10 Unmodified _YLIMGGDDGD_ 0 0 0 nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3 nc|ENSG00000062038|P22223-2|CDH3 nc|ENSG00000062038|P22223-2|CDH3 MSMS UPN47_class_I_Rep_3 4 528.2479858398438 2 528.221139 1054.42773 NaN NaN NaN NaN NaN NaN NaN 77.696 1 80.977 80.477 81.477 3.2816 0 0 0 0.53105 1 19357 19357 4.3292 0 1 56735 973 35690 35708 65227 65227 -0.09731069558665695 YLIMRFCF 8 Unmodified _YLIMRFCF_ 0 0 0 Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|82|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|82|1|anti-sense Cheshire_dup615|chrX:74596547-74598497:+|1.8420335051633685|0.056434177788991|5.03|151.0|82|1|anti-sense MSMS UPN46_class_I_Rep_3 1 546.7718505859375 2 546.772091 1091.52963 NaN NaN NaN NaN NaN NaN NaN 72.95 1 72.95 72.45 73.45 0 0 0 0 0.39624 1 16887 16887 9.3474 0 1 56736 557 35691 35709 65228 65228 -0.012474499499603553 YLIMYRCV 8 Unmodified _YLIMYRCV_ 0 0 0 REV__L1MA2_dup6801|chr16:72448444-72453702:-|4.205578860034894|0.0247959549660819|7.41|151.0|147|3|sense REV__L1MA2_dup6801|chr16:72448444-72453702:-|4.205578860034894|0.0247959549660819|7.41|151.0|147|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.7687377929688 2 530.769548 1059.52454 0.31791 0.00016873 -1.1818 -0.00062729 -0.86394 -0.00045855 530.7686823943023 49.519 0.45646 53.044 52.758 53.214 3.5246 37 28 2 0 0 0 0.82752 1 10035 10035 14.582 0 1 123000 + 56737 24938 35692 35710 65229 65229 -0.002837538125959327 YLINCKGKTLP 11 Unmodified _YLINCKGKTLP_ 0 0 0 L1MC5a_dup1613|chr2:70239809-70240398:+|1.3338375945174787|0.0189857137754822|6.13|151.0|23|3|sense L1MC5a_dup1613|chr2:70239809-70240398:+|1.3338375945174787|0.0189857137754822|6.13|151.0|23|3|sense L1MC5a_dup1613|chr2:70239809-70240398:+|1.3338375945174787|0.0189857137754822|6.13|151.0|23|3|sense MSMS UPN47_class_I_Rep_2 3 625.3518676757812 2 625.352291 1248.69003 NaN NaN NaN NaN NaN NaN NaN 66.39 1 69.649 69.149 70.149 3.2588 0 0 0 0.38417 1 15947 15947 2.7352 0 1 56738 11728 35693 35711 65230 65230 0.07563176247936099 YLINMYVL 8 Unmodified _YLINMYVL_ 0 0 0 Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|4|1|sense Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|4|1|sense Tigger1_dup11788|chr21:14982646-14985081:+|2.7721627752091456|0.1202319724776671|4.53|151.0|4|1|sense MSMS UPN48_class_I_Rep_2 6 514.7766723632812 2 514.777896 1027.54124 NaN NaN NaN NaN NaN NaN NaN 79.154 1 82.787 82.287 83.287 3.6331 0 0 0 0.40404 1 18793 18793 5.2307 0 1 56739 33020 35694 35712 65231 65231 0.02857070345021384 YLINVIILRI 10 Unmodified _YLINVIILRI_ 0 0 0 ENST00000465975.1_1_X:103031923-103041682:+|nuORF ENST00000465975.1_1_X:103031923-103041682:+|nuORF ENST00000465975.1_1_X:103031923-103041682:+|nuORF MSMS UPN46_class_I_Rep_3 1 615.4038696289062 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 12.59 1 12.59 12.09 13.09 0 0 0 0 0.53105 1 149 149 0.40072 0 1 56740 6897 35695 35713 65232 65232 0.1854857629309663 YLIQPLDL 8 Unmodified _YLIQPLDL_ 0 0 0 REV__L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|13|2|sense REV__L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 487.7923889160156 2 487.781493 973.548434 NaN NaN NaN NaN NaN NaN NaN 74.703 1 77.95 77.45 78.45 3.2464 0 0 0 0.39996 1 18502 18502 7.9102 0 1 + 56741 28079 35696 35714 65233 65233 0.06060126217084871 YLIRCWIFF 9 Unmodified _YLIRCWIFF_ 0 0 0 L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|52|1|anti-sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|52|1|anti-sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|52|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 630.8331909179688 2 630.833537 1259.65252 0.67525 0.00042597 -1.3494 -0.00085125 -0.67415 -0.00042528 630.8325814340529 45.914 0.25198 45.914 45.757 46.009 0 33 27 2 0 0 0 0.32219 1 9346 9346 12.532 0 1 158170 56742 12369 35697 35715 65234 65234 0.033081297729268044 YLITQKTSR 9 Unmodified _YLITQKTSR_ 0 0 0 ENST00000530845.5_1_11:86106396-86111747:+|nuORF ENST00000530845.5_1_11:86106396-86111747:+|nuORF ENST00000530845.5_1_11:86106396-86111747:+|nuORF MSMS UPN48_class_I_Rep_2 6 555.3187866210938 2 555.319306 1108.62406 NaN NaN NaN NaN NaN NaN NaN 96.509 1 100.29 99.789 100.79 3.7804 0 0 0 0.39598 1 22926 22926 1.6526 0 1 56743 7293 35698 35716 65235 65235 0.07409103397367289 YLIYDKRY 8 Unmodified _YLIYDKRY_ 0 0 0 REV__L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|15|2|sense REV__L1MB7_dup21391|chr19:37955408-37955994:-|1.3753312037675869|0.0088238176184044|7.28|151.0|15|2|sense MSMS UPN48_class_I_Rep_1 5 567.3021850585938 2 567.303124 1132.5917 NaN NaN NaN NaN NaN NaN NaN 66.597 1 70.048 69.548 70.548 3.4516 0 0 0 0.4032 1 15241 15241 6.3541 0 1 + 56744 26211 35699 35717 65236 65236 0.030703159943641367 YLIYDRVAE 9 Unmodified _YLIYDRVAE_ 0 0 0 L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|22|3|sense L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|22|3|sense L1ME3B_dup6891|chr15:99660777-99661674:+|1.5127105809103103|0.1027834016071559|3.88|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 571.2962036132812 2 571.298039 1140.58152 NaN NaN NaN NaN NaN NaN NaN 21.7 1 25.375 24.875 25.875 3.6749 0 0 0 0.40038 1 2397 2397 0.6015 0 1 56745 12729 35700 35718 65237 65237 0.016857082691331016 YLIYVLMSH 9 Unmodified _YLIYVLMSH_ 0 0 0 REV__L1ME3A_dup3665|chr3:196045693-196046261:-|1.0678659403562782|0.0672329823279773|3.99|151.0|47|3|anti-sense REV__L1ME3A_dup3665|chr3:196045693-196046261:-|1.0678659403562782|0.0672329823279773|3.99|151.0|47|3|anti-sense MSMS UPN48_class_I_Rep_1 5 569.7626953125 2 569.801903 1137.58925 NaN NaN NaN NaN NaN NaN NaN 40.131 1 43.636 43.136 44.136 3.5048 0 0 0 0.39428 1 7166 7166 2.0598 0 1 + 56746 28016 35701 35719 65238 65238 0.02596144265089606 YLKEEKKN 8 Unmodified _YLKEEKKN_ 0 0 0 L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|27|2|sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|27|2|sense L1ME1_dup2843|chr2:24749073-24750171:+|1.1294177174016164|0.0234368597227473|5.59|151.0|27|2|sense MSMS UPN48_class_I_Rep_3 7 526.2928466796875 2 526.292756 1050.57096 NaN NaN NaN NaN NaN NaN NaN 30.02 1 33.749 33.249 34.249 3.7286 0 0 0 0.40643 1 4280 4280 2.0598 0.21551 1 56747 12368 35702 35720 65239 65239 0.04769725614710296 YLKELQKQ 8 Unmodified _YLKELQKQ_ 0 0 0 L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|38|3|sense L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|38|3|sense L1PB1_dup1105|chr2:63141376-63142817:-|1.1930724830117905|0.015746130667541|6.24|151.0|38|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 525.3624267578125 2 525.303124 1048.5917 0.35834 0.00018824 4.2169 0.0022151 4.5752 0.0024034 525.8069727208347 72.889 0.034912 76.116 76.103 76.138 3.2271 4 2 2 0 0 0 0.72333 1 17975 17975 2.0598 0 1 26764 56748 15008 35703 35721 65240 65240 0.06934315994362805 YLKELVYV 8 Unmodified _YLKELVYV_ 0 0 0 L1M4c_dup2406|chr10:73371374-73372276:+|1.2167175017279328|0.0556174222019347|4.45|151.0|31|3|sense L1M4c_dup2406|chr10:73371374-73372276:+|1.2167175017279328|0.0556174222019347|4.45|151.0|31|3|sense L1M4c_dup2406|chr10:73371374-73372276:+|1.2167175017279328|0.0556174222019347|4.45|151.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 513.7968139648438 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 77.057 1 80.658 80.158 81.158 3.6016 0 0 0 0.40738 1 18179 18179 0.79363 0 1 56749 9051 35704 35722 65241 65241 0.067966992511856 YLKERRVY 8 Unmodified _YLKERRVY_ 0 0 0 ENST00000529280.5_1_11:74992876-74995312:-|nuORF;nc|ENSG00000137486|P49407-2|ARRB1;ENSG00000137486|ENST00000420843|ARRB1 ENST00000529280.5_1_11:74992876-74995312:-|nuORF ENST00000529280.5_1_11:74992876-74995312:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 563.822265625 2 563.822015 1125.62948 0.35307 0.00019907 -0.28955 -0.00016325 0.063519 3.5813E-05 563.82175124934 44.831 0.3957 48.468 48.295 48.691 3.6372 36 24 2 0 0 0 0.82752 1 8469 8469 4.756 0 1 123740 56750 3028 35705 35723 65242 65242 0.0716882697984147 YLKFNFNFF 9 Unmodified _YLKFNFNFF_ 0 0 0 Tigger3b_dup318|chr1:176051336-176052371:+|2.416812139336643|0.0364313841963459|6.05|151.0|60|2|anti-sense Tigger3b_dup318|chr1:176051336-176052371:+|2.416812139336643|0.0364313841963459|6.05|151.0|60|2|anti-sense Tigger3b_dup318|chr1:176051336-176052371:+|2.416812139336643|0.0364313841963459|6.05|151.0|60|2|anti-sense MSMS UPN48_class_I_Rep_1 5 620.3157348632812 2 620.313492 1238.61243 NaN NaN NaN NaN NaN NaN NaN 37.593 1 41.099 40.599 41.599 3.5052 0 0 0 0.39518 1 6409 6409 1.8442 0 1 56751 33385 35706 35724 65243 65243 0.0026690637403135042 YLKGAFFF 8 Unmodified _YLKGAFFF_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|290|1|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|290|1|anti-sense MSMS UPN48_class_I_Rep_2 6 496.7635803222656 2 496.765646 991.516739 NaN NaN NaN NaN NaN NaN NaN 51.332 1 54.999 54.499 55.499 3.6679 0 0 0 0.40604 1 10570 10570 2.5775 0.27475 1 + 56752 25093 35707 35725 65244 65244 0.020641782538064035 YLKGQERVQG 10 Unmodified _YLKGQERVQG_ 0 0 0 REV__MER1A_dup114|chr1:113745490-113746014:+|1.1564038845839535|0.2019229943520924|2.52|151.0|15|3|sense REV__MER1A_dup114|chr1:113745490-113746014:+|1.1564038845839535|0.2019229943520924|2.52|151.0|15|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 589.8192138671875 2 589.319837 1176.62512 0.29827 0.00017577 -1.3908 -0.00081964 -1.0926 -0.00064386 589.3189637018584 47.073 0.44582 50.424 50.132 50.577 3.3515 45 31 2 0 0 0 0.56033 1 10039 10039 3.5965 0 1 83984 + 56753 31115 35708 35726 65245 65245 0.0438731776628174 YLKHWIVR 8 Unmodified _YLKHWIVR_ 0 0 0 REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|250|2|anti-sense REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|250|2|anti-sense MSMS UPN46_class_I_Rep_3 1 557.8300170898438 2 557.829643 1113.64473 NaN NaN NaN NaN NaN NaN NaN 12.115 1 12.115 11.615 12.615 0 0 0 0 0.40746 1 28 28 0.69038 0 1 + 56754 23528 35709 35727 65246 65246 0.09245738567688022 YLKIKHVF 8 Unmodified _YLKIKHVF_ 0 0 0 ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF MSMS UPN47_class_I_Rep_1 2 524.3209838867188 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 38.437 1 42.102 41.602 42.602 3.6652 0 0 0 0.40738 1 7407 7407 0.79363 0 1 56755 6836 35710 35728 65247 65247 0.10623817961868554 YLKIKHVF 8 Unmodified _YLKIKHVF_ 0 0 0 ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF MSMS UPN47_class_I_Rep_2 3 524.7687377929688 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 34.343 1 37.769 37.269 38.269 3.4253 0 0 0 0.40738 1 6200 6200 0.79363 0 1 56756 6836 35710 35728 65248 65248 0.10623817961868554 YLKIKHVF 8 Unmodified _YLKIKHVF_ 0 0 0 ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF MSMS UPN48_class_I_Rep_1 5 524.41796875 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 47.855 1 51.376 50.876 51.876 3.5219 0 0 0 0.40738 1 9501 9501 0.79363 0 1 56757 6836 35710 35728 65249 65249 0.10623817961868554 YLKIKHVF 8 Unmodified _YLKIKHVF_ 0 0 0 ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF MSMS UPN48_class_I_Rep_2 6 524.3092041015625 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 38.832 1 42.562 42.062 43.062 3.7297 0 0 0 0.40738 1 6816 6816 0.79363 0 1 56758 6836 35710 35728 65250 65250 0.10623817961868554 YLKIKHVF 8 Unmodified _YLKIKHVF_ 0 0 0 ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF MSMS UPN48_class_I_Rep_3 7 524.7793579101562 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 39.459 1 43.114 42.614 43.614 3.6557 0 0 0 0.40738 1 6905 6905 0.79363 0 1 56759 6836 35710 35728 65251 65251 0.10623817961868554 YLKKLGKI 8 Unmodified _YLKKLGKI_ 0 0 0 REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 481.49981689453125 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 84.491 1 84.491 83.991 84.991 0 0 0 0 0.40798 1 20103 20103 0 0 1 + 56760 23329 35711 35729 65252 65252 0.15008702104671556 YLKKLGKI 8 Unmodified _YLKKLGKI_ 0 0 0 REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 481.37322998046875 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 105.33 1 105.33 104.83 105.83 0 0 0 0 0.40798 1 25696 25696 0 0 1 + 56761 23329 35711 35729 65253 65253 0.15008702104671556 YLKKLGKI 8 Unmodified _YLKKLGKI_ 0 0 0 REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense MSMS UPN46_class_I_Rep_3 1 481.6273193359375 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 106.45 1 106.45 105.95 106.95 0 0 0 0 0.40798 1 25958 25958 0 0 1 + 56762 23329 35711 35729 65254 65254 0.15008702104671556 YLKKLGKI 8 Unmodified _YLKKLGKI_ 0 0 0 REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense REV__HAL1_dup10249|chr7:67230939-67231930:-|1.112025080690361|0.373513300326998|1.57|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 481.8259582519531 2 481.823495 961.632438 NaN NaN NaN NaN NaN NaN NaN 78.333 1 81.855 81.355 82.355 3.5221 0 0 0 0.40798 1 18679 18679 0 0 1 + 56763 23329 35711 35729 65255 65255 0.15008702104671556 YLKKLIFY 8 Unmodified _YLKKLIFY_ 0 0 0 L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|52|2|anti-sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|52|2|anti-sense L1MC5_dup2431|chr3:37076887-37077739:+|1.2119058486029708|0.1089094989799344|3.48|151.0|52|2|anti-sense MSMS UPN48_class_I_Rep_1 5 544.3325805664062 2 544.331153 1086.64775 NaN NaN NaN NaN NaN NaN NaN 83.175 1 86.762 86.262 87.262 3.5871 0 0 0 0.40738 1 19883 19883 0.79363 0 1 56764 11680 35712 35730 65256 65256 0.10789568901850544 YLKKLKKLRE 10 Unmodified _YLKKLKKLRE_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3;LEMD3|p.L297Afs*4|1|0.06|ENSG00000174106|chr12:65170477-65170478|-/C|frameshift_variant ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MSMS UPN47_class_I_Rep_3 4 440.29193115234375 3 440.29049 1317.84964 NaN NaN NaN NaN NaN NaN NaN 60.38 1 63.545 63.045 64.045 3.1651 0 0 0 0.53105 1 14174 14174 0.15932 0 1 56765 4663 35713 35731 65257 65257 0.20343052587395505 YLKKLKVKK 9 Unmodified _YLKKLKVKK_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS UPN48_class_I_Rep_3 7 574.401123046875 2 574.399902 1146.78525 NaN NaN NaN NaN NaN NaN NaN 90.653 1 94.5 94 95 3.847 0 0 0 0.4029 1 21506 21506 0 0 1 56766 3325 35714 35732 65258 65258 0.21772897501273292 YLKKLPQPPKP 11 Unmodified _YLKKLPQPPKP_ 0 0 0 Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 436.93994140625 3 436.939458 1307.79654 0.023507 1.0271E-05 0.95546 0.00041748 0.97897 0.00042775 436.9397805096581 55.508 0.53467 59.063 58.804 59.338 3.5554 41 32 2 0 0 0 0.67113 1 11750 11750 1.3296 0 1 90223 56767 33034 35715 35733 65259 65259 0.1549567480474252 YLKKLPQPPKP 11 Unmodified _YLKKLPQPPKP_ 0 0 0 Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 436.939458 1307.79654 0.017847 7.798E-06 1.0079 0.00044039 1.0257 0.00044819 436.9398457979308 55.565 0.44797 59.074 58.953 59.401 3.5082 -0.047782 5.6018E-06 NaN 1.3296 39 28 2 NaN NaN NaN NaN 0 NaN NaN 0 59741 56768 33034 35715 35733 0.1549567480474252 YLKKLPQPPKP 11 Unmodified _YLKKLPQPPKP_ 0 0 0 Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 436.939458 1307.79654 0.2313 0.00010106 1.0347 0.00045208 1.2659 0.00055314 437.27420533021285 55.672 0.38785 59.227 59.007 59.395 3.5559 0.10603 4.0673E-05 NaN 1.3296 37 24 2 NaN NaN NaN NaN 0 NaN NaN 0 128630 56769 33034 35715 35733 0.1549567480474252 YLKKLPQPPKP 11 Unmodified _YLKKLPQPPKP_ 0 0 0 Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense Tigger1_dup133|chr1:35377479-35379094:-|3.905741046606539|0.0927667359301384|5.4|151.0|51|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 3 436.939458 1307.79654 0.023507 1.0271E-05 0.95546 0.00041748 0.97897 0.00042775 436.9397805096581 55.508 0.53467 59.063 58.804 59.338 3.5554 -0.058245 -6.3132E-05 NaN 1.3296 41 32 2 NaN NaN NaN NaN 0 NaN NaN 0 90223 56770 33034 35715 35733 0.1549567480474252 YLKLLIPV 8 Unmodified _YLKLLIPV_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|186|3|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|186|3|sense MSMS UPN46_class_I_Rep_3 1 479.737548828125 2 479.820421 957.62629 NaN NaN NaN NaN NaN NaN NaN 119.84 1 119.84 119.34 120.34 0 0 0 0 0.40738 1 29804 29804 0.79363 0 1 + 56771 29418 35716 35734 65260 65260 0.14578183873140915 YLKLLIPV 8 Unmodified _YLKLLIPV_ 0 0 0 REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|186|3|sense REV__L1PA16_dup8437|chrX:81302770-81308984:-|3.900201803115436|0.0238197094172836|7.36|151.0|186|3|sense MSMS UPN47_class_I_Rep_1 2 479.82171630859375 2 479.820421 957.62629 NaN NaN NaN NaN NaN NaN NaN 48.431 1 52.112 51.612 52.612 3.6819 0 0 0 0.40738 1 10447 10447 0.79363 0 1 + 56772 29418 35716 35734 65261 65261 0.14578183873140915 YLKQFLSI 8 Unmodified _YLKQFLSI_ 0 0 0 REV__L1MC5a_dup2509|chr2:210037550-210037957:-|1.362170753636477|0.3543810153857067|1.94|151.0|28|3|anti-sense REV__L1MC5a_dup2509|chr2:210037550-210037957:-|1.362170753636477|0.3543810153857067|1.94|151.0|28|3|anti-sense MSMS UPN47_class_I_Rep_2 3 506.2973937988281 2 506.29731 1010.58007 NaN NaN NaN NaN NaN NaN NaN 65.139 1 68.395 67.895 68.895 3.2556 0 0 0 0.3903 1 15565 15565 11.64 0 1 + 56773 27149 35717 35735 65262 65262 0.0752011897105831 YLKQFLSI 8 Unmodified _YLKQFLSI_ 0 0 0 REV__L1MC5a_dup2509|chr2:210037550-210037957:-|1.362170753636477|0.3543810153857067|1.94|151.0|28|3|anti-sense REV__L1MC5a_dup2509|chr2:210037550-210037957:-|1.362170753636477|0.3543810153857067|1.94|151.0|28|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 506.2972412109375 2 506.29731 1010.58007 0.24216 0.00012261 0.18762 9.4991E-05 0.42978 0.0002176 506.2972717665173 65.327 0.50298 68.506 68.156 68.659 3.1795 56 40 2 0 0 0 0.82752 1 15648 15648 11.64 0 1 98823 + 56774 27149 35717 35735 65263 65263 0.0752011897105831 YLKRAKDK 8 Unmodified _YLKRAKDK_ 0 0 0 REV__ENSG00000170891|ENST00000307746|CYTL1 REV__ENSG00000170891|ENST00000307746|CYTL1 MSMS UPN47_class_I_Rep_3 4 511.3115539550781 2 511.311284 1020.60801 NaN NaN NaN NaN NaN NaN NaN 113.54 1 117.04 116.54 117.54 3.4963 0 0 0 0.40746 1 27855 27855 0.69038 0 1 + 56775 20386 35718 35736 65264 65264 0.09853441951133846 YLKRWHRA 8 Unmodified _YLKRWHRA_ 0 0 0 REV__ENST00000392722.3_1_X:100793789-100794143:-|nuORF REV__ENST00000392722.3_1_X:100793789-100794143:-|nuORF MSMS UPN48_class_I_Rep_2 6 565.3239135742188 2 565.322517 1128.63048 NaN NaN NaN NaN NaN NaN NaN 71.656 1 75.206 74.706 75.706 3.5505 0 0 0 0.40364 1 16734 16734 5.7604 0 1 + 56776 22092 35719 35737 65265 65265 0.07131086139406762 YLKVKGNVF 9 Unmodified _YLKVKGNVF_ 0 0 0 ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000472309.1_1_4:179208113-179208287:+|nuORF ENST00000472309.1_1_4:179208113-179208287:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 534.3159790039062 2 534.316035 1066.61752 -0.045987 -2.4571E-05 0.021248 1.1353E-05 -0.024739 -1.3218E-05 534.3159572077972 39.335 1.5457 42.713 42.229 43.775 3.3785 240 96 4 0 0 0 0.014412 1 7736 7736 100.37 35.136 1 728530 56777 1857 35720 35738 65266 65266 0.08687210236666942 YLKVKGNVF 9 Unmodified _YLKVKGNVF_ 0 0 0 ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENSG00000108298|ENST00000225430|RPL19 ENST00000472309.1_1_4:179208113-179208287:+|nuORF ENST00000472309.1_1_4:179208113-179208287:+|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 534.316035 1066.61752 -0.072943 -3.8975E-05 0.063256 3.3799E-05 -0.0096868 -5.1758E-06 534.3159767654723 39.51 1.4814 42.748 42.296 43.778 3.238 0.078973 2.6342E-05 NaN 100.37 253 96 3 NaN NaN NaN NaN 0 NaN NaN 0 660470 56778 1857 35720 35738 0.08687210236666942 YLKVLVDSL 9 Unmodified _YLKVLVDSL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.G1520V|1|0.11|ENSG00000155561|chr7:135625243-135625243|G/T|missense_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS UPN47_class_I_Rep_1 2 525.3157958984375 2 525.3157 1048.61685 0.3085 0.00016206 -0.018475 -9.7053E-06 0.29003 0.00015236 525.3157475161312 63.792 0.23321 67.148 67.065 67.298 3.3557 24 19 2 0 0 0 0.37599 1 15111 15111 9.3831 5.4387 1 61470 56779 3705 35721 35739 65267 65267 0.09448370796940253 YLKVLVDSL 9 Unmodified _YLKVLVDSL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.G1520V|1|0.11|ENSG00000155561|chr7:135625243-135625243|G/T|missense_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS UPN47_class_I_Rep_1 2 525.3158569335938 2 525.3157 1048.61685 NaN NaN NaN NaN NaN NaN NaN 63.604 1 66.96 66.46 67.46 3.3557 0 0 0 0.096434 1 15061 15061 25.399 9.5521 1 56780 3705 35721 35739 65268 65268 0.09448370796940253 YLKVLVDSL 9 Unmodified _YLKVLVDSL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.G1520V|1|0.11|ENSG00000155561|chr7:135625243-135625243|G/T|missense_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS UPN47_class_I_Rep_2 3 525.304443359375 2 525.3157 1048.61685 NaN NaN NaN NaN NaN NaN NaN 64.336 1 67.592 67.092 68.092 3.2556 0 0 0 0.31276 1 15320 15320 10.074 3.3508 1 56781 3705 35721 35739 65269 65269 0.09448370796940253 YLKVLVDSL 9 Unmodified _YLKVLVDSL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.G1520V|1|0.11|ENSG00000155561|chr7:135625243-135625243|G/T|missense_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS UPN47_class_I_Rep_3 4 525.3153686523438 2 525.3157 1048.61685 NaN NaN NaN NaN NaN NaN NaN 64.185 1 67.359 66.859 67.859 3.1741 0 0 0 0.38478 1 15333 15333 4.3292 2.2695 1 56782 3705 35721 35739 65270 65270 0.09448370796940253 YLKVLVDSL 9 Unmodified _YLKVLVDSL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;NUP205|p.G1520V|1|0.11|ENSG00000155561|chr7:135625243-135625243|G/T|missense_variant ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MATCH UPN47_class_I_Rep_3 4 2 525.3157 1048.61685 0.33617 0.00017659 0.24584 0.00012914 0.582 0.00030574 525.3158349554539 64.041 0.1624 67.215 67.195 67.358 3.1741 0.033573 0.0002092 NaN 9.3831 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 51893 56783 3705 35721 35739 0.09448370796940253 YLKVSYNLI 9 Unmodified _YLKVSYNLI_ 0 0 0 L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|88|2|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|88|2|anti-sense L1MC5a_dup14877|chr17:31299936-31301490:-|2.129796077137125|0.0570435461995113|5.22|151.0|88|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 556.820068359375 2 556.82115 1111.62775 0.42589 0.00023714 -0.38529 -0.00021454 0.040599 2.2607E-05 556.8209530031216 63.744 0.25967 67.253 67.169 67.429 3.5091 24 18 2 0 0 0 0.33908 1 14312 14312 11.495 0.6952 1 136300 56784 11724 35722 35740 65271 65271 0.07639773171240449 YLKVVGLLG 9 Unmodified _YLKVVGLLG_ 0 0 0 L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|94|2|anti-sense L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|94|2|anti-sense L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|94|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 481.30780029296875 2 481.307678 960.600803 -0.20587 -9.9089E-05 0.079806 3.8411E-05 -0.12607 -6.0678E-05 481.30770747185824 43.532 0.58258 46.774 46.492 47.074 3.2419 55 36 2 0 0 0 0.12551 1 9124 9124 0 0 1 106600 56785 14067 35723 35741 65272 65272 0.11892709350729547 YLKVVGLLG 9 Unmodified _YLKVVGLLG_ 0 0 0 L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|94|2|anti-sense L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|94|2|anti-sense L1PA16_dup2009|chr2:230474525-230476431:-|1.6827978071690304|0.1496884547499471|3.49|151.0|94|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 481.307678 960.600803 -0.21751 -0.00010469 -0.15859 -7.6329E-05 -0.3761 -0.00018102 481.3075379419755 42.825 0.77415 46.512 46.246 47.02 3.6875 -0.15835 -3.2917E-05 NaN 0 84 55 2 NaN NaN NaN NaN 0 NaN NaN 0 86455 56786 14067 35723 35741 0.11892709350729547 YLKYMRNL 8 Unmodified _YLKYMRNL_ 0 0 0 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 REV__nc|ENSG00000213471|A6NNM8-2|TTLL13 MULTI-SECPEP UPN47_class_I_Rep_3 4 550.2169189453125 2 550.799694 1099.58484 -0.44497 -0.00024509 0.8799 0.00048465 0.43493 0.00023956 550.8002135871598 13.289 0.17408 16.662 16.575 16.749 3.3734 24 20 2 0 0 0 0.72333 1 283 283 2.3027 0.24298 1 23527 + 56787 21247 35724 35742 65273 65273 0.039026798421446074 YLKYNLYY 8 Unmodified _YLKYNLYY_ 0 0 0 REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|78|1|anti-sense REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|78|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 570.7932739257812 2 570.292225 1138.5699 0.36858 0.0002102 -1.3121 -0.00074828 -0.94352 -0.00053808 570.2913506410001 74.486 0.34229 77.88 77.793 78.135 3.3937 43 29 2 0 0 0 0.82752 3 18340 18340;18351;18400 9.3474 0 1 57994 + 56788 26754 35725 35743 65274;65275;65276 65274 0.0061551124579182215 YLKYNLYY 8 Unmodified _YLKYNLYY_ 0 0 0 REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|78|1|anti-sense REV__L1MC3_dup4732|chr6:75617578-75619445:-|1.9174271815211583|0.0395329993211663|5.6|151.0|78|1|anti-sense MSMS UPN47_class_I_Rep_1 2 570.2897338867188 2 570.292225 1138.5699 NaN NaN NaN NaN NaN NaN NaN 72.447 1 75.827 75.327 76.327 3.3799 0 0 0 0.35537 1 17728 17728 20.871 0 1 + 56789 26754 35725 35743 65277 65277 0.0061551124579182215 YLLAICIP 8 Unmodified _YLLAICIP_ 0 0 0 L1MA3_dup6092|chr10:68003469-68004580:-|1.6504203754793|0.042000053253515|5.3|151.0|62|2|anti-sense;L1MB7_dup827|chr1:93083352-93084720:-|1.366960256405836|0.0149764375325114|6.51|151.0|67|1|anti-sense L1MA3_dup6092|chr10:68003469-68004580:-|1.6504203754793|0.042000053253515|5.3|151.0|62|2|anti-sense L1MA3_dup6092|chr10:68003469-68004580:-|1.6504203754793|0.042000053253515|5.3|151.0|62|2|anti-sense MSMS UPN47_class_I_Rep_1 2 452.8698425292969 2 453.261882 904.509211 NaN NaN NaN NaN NaN NaN NaN 29.118 1 32.876 32.376 33.376 3.7578 0 0 0 0.40738 1 4580 4580 0.79363 0 1 56790 9577 35726 35744 65278 65278 0.053137026618628624 YLLARIPG 8 Unmodified _YLLARIPG_ 0 0 0 REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|58|1|anti-sense REV__L1MA10_dup1282|chr4:174292091-174293456:-|1.1347969073833803|0.0768492380391167|3.88|151.0|58|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 451.7754821777344 2 451.776545 901.538538 -0.70855 -0.00032011 0.055051 2.4871E-05 -0.6535 -0.00029524 451.77642764491327 39.491 0.7653 42.729 42.388 43.153 3.238 68 50 2 0 0 0 0.82752 4 7766 7766;7796;7837;7893 14.582 0 1 79783 + 56791 24814 35727 35745 65279;65280;65281;65282 65279 0.08382983002388755 YLLARYLL 8 Unmodified _YLLARYLL_ 0 0 0 REV__L1MEg_dup11849|chr14:89596437-89598448:-|3.457771876212445|0.0185620289076211|7.54|151.0|122|2|anti-sense REV__L1MEg_dup11849|chr14:89596437-89598448:-|3.457771876212445|0.0185620289076211|7.54|151.0|122|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 512.8130493164062 2 512.813128 1023.6117 0.35852 0.00018386 -0.16293 -8.3552E-05 0.1956 0.0001003 512.8128962543692 66.825 0.8537 70.333 69.962 70.815 3.5077 92 59 2 0 0 0 0.82752 1 15241 15241 32.117 3.9437 1 252570 + 56792 28717 35728 35746 65283 65283 0.10084111724984268 YLLCHIFAAP 10 Unmodified _YLLCHIFAAP_ 0 0 0 Tigger3b_dup5830|chr18:9946591-9947481:-|2.826807055831252|0.4750889361483877|2.57|151.0|18|2|sense Tigger3b_dup5830|chr18:9946591-9947481:-|2.826807055831252|0.4750889361483877|2.57|151.0|18|2|sense Tigger3b_dup5830|chr18:9946591-9947481:-|2.826807055831252|0.4750889361483877|2.57|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 574.3028564453125 2 574.30207 1146.58959 NaN NaN NaN NaN NaN NaN NaN 28.09 1 31.648 31.148 32.148 3.5571 0 0 0 0.53105 1 3711 3711 4.3292 0.73274 1 56793 33404 35729 35747 65284 65284 0.022155639849188447 YLLCHIFAAP 10 Unmodified _YLLCHIFAAP_ 0 0 0 Tigger3b_dup5830|chr18:9946591-9947481:-|2.826807055831252|0.4750889361483877|2.57|151.0|18|2|sense Tigger3b_dup5830|chr18:9946591-9947481:-|2.826807055831252|0.4750889361483877|2.57|151.0|18|2|sense Tigger3b_dup5830|chr18:9946591-9947481:-|2.826807055831252|0.4750889361483877|2.57|151.0|18|2|sense MSMS UPN48_class_I_Rep_2 6 574.302978515625 2 574.30207 1146.58959 NaN NaN NaN NaN NaN NaN NaN 28.299 1 31.93 31.43 32.43 3.6311 0 0 0 0.53105 1 3880 3880 4.3292 0.73274 1 56794 33404 35729 35747 65285 65285 0.022155639849188447 YLLCQYFQLS 10 Unmodified _YLLCQYFQLS_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|284|1|anti-sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|284|1|anti-sense MSMS UPN48_class_I_Rep_2 6 639.3157348632812 2 639.315374 1276.6162 NaN NaN NaN NaN NaN NaN NaN 54.508 1 58.09 57.59 58.59 3.5817 0 0 0 0.53105 1 11528 11528 3.5965 0 1 + 56795 25853 35730 35748 65286 65286 -0.011047919144175466 YLLCQYFQLS 10 Unmodified _YLLCQYFQLS_ 0 0 0 REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|284|1|anti-sense REV__L1MB3_dup1862|chr2:68755992-68762409:+|15.941382383768495|0.056917647798233|8.13|151.0|284|1|anti-sense MSMS UPN48_class_I_Rep_3 7 639.3153076171875 2 639.315374 1276.6162 NaN NaN NaN NaN NaN NaN NaN 54.472 1 58.042 57.542 58.542 3.5694 0 0 0 0.53105 1 11455 11455 1.6526 0 1 + 56796 25853 35730 35748 65287 65287 -0.011047919144175466 YLLDFCVWPL 10 Unmodified _YLLDFCVWPL_ 0 0 0 REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|70|1|anti-sense REV__HERV9N-int_dup172|chr12:29172397-29174423:-|1.1083981677439356|0.0131818019328274|6.39|151.0|70|1|anti-sense MSMS UPN46_class_I_Rep_3 1 634.8253784179688 2 634.822835 1267.63112 NaN NaN NaN NaN NaN NaN NaN 59.033 1 59.033 58.533 59.533 0 0 0 0 0.53105 1 13027 13027 1.6526 0.17072 1 + 56797 23620 35731 35749 65288 65288 0.00800699953606454 YLLDQHILI 9 Unmodified _YLLDQHILI_ 0 0 0 ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D ENSG00000168918|ENST00000445964|INPP5D ENSG00000168918|ENST00000445964|INPP5D MULTI-MSMS UPN47_class_I_Rep_2 3 564.3267822265625 2 564.326599 1126.63865 0.42348 0.00023898 0.03485 1.9667E-05 0.45833 0.00025865 564.32648876425 71.829 0.64727 75.119 74.655 75.302 3.2899 72 52 2 0 0 0 0.32682 1 17534 17534 12.241 0 1 88891 56798 4395 35732 35750 65289 65289 0.08039175545536636 YLLDVSPYL 9 Unmodified _YLLDVSPYL_ 0 0 0 L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|72|3|anti-sense L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|72|3|anti-sense L1M4a1_dup2503|chr22:20740090-20741170:+|2.7786144386638254|0.3227231026000144|3.11|151.0|72|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.789794921875 2 541.792058 1081.56956 NaN NaN NaN NaN NaN NaN NaN 63.333 1 66.791 66.291 67.291 3.4578 0 0 0 0.38299 1 14249 14249 4.756 0 1 56799 8949 35733 35751 65290 65290 0.032040915259585745 YLLEIRFRH 9 Unmodified _YLLEIRFRH_ 0 0 0 AluSc_dup4937|chr2:196147737-196148027:-|1.6870902188753285|0.0625134008555228|4.75|151.0|13|1|anti-sense AluSc_dup4937|chr2:196147737-196148027:-|1.6870902188753285|0.0625134008555228|4.75|151.0|13|1|anti-sense AluSc_dup4937|chr2:196147737-196148027:-|1.6870902188753285|0.0625134008555228|4.75|151.0|13|1|anti-sense MSMS UPN47_class_I_Rep_1 2 416.24884033203125 3 416.240018 1245.69823 NaN NaN NaN NaN NaN NaN NaN 110.89 1 114.48 113.98 114.98 3.5835 0 0 0 0.39841 1 27342 27342 1.0715 0 1 56800 205 35734 35752 65291 65291 0.0852049127954615 YLLFHLGP 8 Unmodified _YLLFHLGP_ 0 0 0 REV__HAL1ME_dup5429|chrX:154075303-154075448:+|1.6612409401669572|0.0138051578047309|6.91|151.0|8|2|anti-sense REV__HAL1ME_dup5429|chrX:154075303-154075448:+|1.6612409401669572|0.0138051578047309|6.91|151.0|8|2|anti-sense MSMS UPN47_class_I_Rep_1 2 480.2852783203125 2 480.271096 958.527639 NaN NaN NaN NaN NaN NaN NaN 12.904 1 16.354 15.854 16.854 3.45 0 0 0 0.40738 1 185 185 0.79363 0 1 + 56801 23496 35735 35753 65292 65292 0.04671580628087213 YLLFKIKQY 9 Unmodified _YLLFKIKQY_ 0 0 0 REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|207|3|sense REV__HERV1_I-int_dup22|chrY:13339639-13346814:+|3.742625428079751|0.1383404396924157|4.76|85.0|207|3|sense MSMS UPN46_class_I_Rep_3 1 405.90155029296875 3 405.909387 1214.70633 NaN NaN NaN NaN NaN NaN NaN 21.465 1 21.465 20.965 21.965 0 0 0 0 0.3979 1 2403 2403 1.1933 0.41681 1 + 56802 23534 35736 35754 65293 65293 0.10756625476301451 YLLFNYYAL 9 Unmodified _YLLFNYYAL_ 0 0 0 REV__Tigger3b_dup5738|chr17:46090691-46091784:+|2.3151600667062056|0.0284223004426914|6.35|150.0|47|1|anti-sense REV__Tigger3b_dup5738|chr17:46090691-46091784:+|2.3151600667062056|0.0284223004426914|6.35|150.0|47|1|anti-sense MSMS UPN47_class_I_Rep_1 2 590.3091430664062 2 590.307875 1178.6012 NaN NaN NaN NaN NaN NaN NaN 15.42 1 18.917 18.417 19.417 3.4968 0 0 0 0.39428 1 812 812 2.0598 0 1 + 56803 32762 35737 35755 65294 65294 0.019040842798858648 YLLFVQLLV 9 Unmodified _YLLFVQLLV_ 0 0 0 REV__Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|69|1|anti-sense REV__Tigger2_dup1318|chr7:105082288-105084344:-|4.517269275157337|0.2271982503753588|4.31|151.0|69|1|anti-sense MSMS UPN46_class_I_Rep_3 1 554.3439331054688 2 554.344261 1106.67397 NaN NaN NaN NaN NaN NaN NaN 104.83 1 104.83 104.33 105.33 0 0 0 0 0.40038 1 25580 25580 0.6015 0 1 + 56804 32631 35738 35756 65295 65295 0.12489838073315696 YLLFWFGF 8 Unmodified _YLLFWFGF_ 0 0 0 REV__L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|159|3|anti-sense REV__L1MB8_dup9909|chr10:16735907-16738164:+|1.8984512869462844|0.0564378413483871|5.07|150.0|159|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 547.2796630859375 2 546.781296 1091.54804 0.29246 0.00015991 -0.56207 -0.00030733 -0.2696 -0.00014741 547.2812767781575 50.591 0.59559 54.22 53.763 54.359 3.6285 37 26 2 0 0 0 0.82752 1 11045 11045 2.8892 0 1 87936 + 56805 26450 35739 35757 65296 65296 0.005927512878770358 YLLHLLINVN 10 Unmodified _YLLHLLINVN_ 0 0 0 REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|79|2|anti-sense REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|79|2|anti-sense MSMS UPN46_class_I_Rep_3 1 606.3610229492188 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 37.288 1 37.288 36.788 37.788 0 0 0 0 0.53105 1 6997 6997 0 0 1 + 56806 26959 35740 35758 65297 65297 0.11046839845266732 YLLHLLINVN 10 Unmodified _YLLHLLINVN_ 0 0 0 REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|79|2|anti-sense REV__L1MC4_dup977|chr1:121302322-121303922:-|1.0105091003145987|0.0116257431537324|6.44|151.0|79|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 606.3615112304688 2 606.360973 1210.70739 0.55099 0.0003341 0.25892 0.000157 0.80991 0.0004911 606.3609548786804 108.62 0.61702 112.3 112.21 112.82 3.6751 131 70 2 0 0 0 0.56543 1 25809 25809 0 0 1 37548000 + 56807 26959 35740 35758 65298 65298 0.11046839845266732 YLLHPSLLP 9 Unmodified _YLLHPSLLP_ 0 0 0 ENST00000300952.6_1_19:1257468-1257951:+|nuORF ENST00000300952.6_1_19:1257468-1257951:+|nuORF ENST00000300952.6_1_19:1257468-1257951:+|nuORF MSMS UPN47_class_I_Rep_1 2 526.8106689453125 2 526.810585 1051.60662 NaN NaN NaN NaN NaN NaN NaN 76.514 1 79.929 79.429 80.429 3.4149 0 0 0 0.099968 1 18939 18939 24.674 0 1 56808 6070 35741 35759 65299 65299 0.08287807862393493 YLLHYCKAN 9 Unmodified _YLLHYCKAN_ 0 0 0 nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-3|SEL1L3 MSMS UPN48_class_I_Rep_2 6 562.7796020507812 2 562.781502 1123.54845 NaN NaN NaN NaN NaN NaN NaN 37.341 1 41.043 40.543 41.543 3.7021 0 0 0 0.39326 1 6380 6380 2.3027 0.24298 1 56809 1373 35742 35760 65300 65300 -0.008381970545542572 YLLIEDRC 8 Unmodified _YLLIEDRC_ 0 0 0 REV__AluJr_dup48534|chr10:49973395-49973685:+|1.009616650369987|0.1829130369069416|2.46|151.0|20|2|anti-sense REV__AluJr_dup48534|chr10:49973395-49973685:+|1.009616650369987|0.1829130369069416|2.46|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_2 6 512.2781372070312 2 512.760235 1023.50592 NaN NaN NaN NaN NaN NaN NaN 32.159 1 35.809 35.309 36.309 3.6497 0 0 0 0.40738 1 4934 4934 0.79363 0 1 + 56810 17040 35743 35761 65301 65301 -0.004895921827937855 YLLIFVYTWVF 11 Unmodified _YLLIFVYTWVF_ 0 0 0 REV__L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|53|1|anti-sense REV__L1MB8_dup10576|chr10:112771527-112772792:-|1.853198988436209|0.0182055060757287|6.67|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_1 5 488.60400390625 3 488.603963 1462.79006 NaN NaN NaN NaN NaN NaN NaN 110.05 1 113.68 113.18 114.18 3.6326 0 0 0 0.38417 1 26728 26728 0.45452 0 1 + 56811 26336 35744 35762 65302 65302 0.07717736853351198 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 489.4922180175781 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 23.911 1 23.911 23.411 24.411 0 0 0 0 0.40798 1 3069 3069 0 0 1 + 56812 24692 35745 35763 65303 65303 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN46_class_I_Rep_3 1 490.2795104980469 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 112.42 1 112.42 111.92 112.92 0 0 0 0 0.40798 1 27750 27750 0 0 1 + 56813 24692 35745 35763 65304 65304 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 489.80584716796875 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 55.735 1 59.213 58.713 59.713 3.4785 0 0 0 0.40798 1 12674 12674 0 0 1 + 56814 24692 35745 35763 65305 65305 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 489.8059997558594 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 96.202 1 99.966 99.466 100.47 3.7648 0 0 0 0.40798 1 23859 23859 0 0 1 + 56815 24692 35745 35763 65306 65306 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 489.806396484375 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 102.55 1 106.34 105.84 106.84 3.7888 0 0 0 0.40798 1 25238 25238 0 0 1 + 56816 24692 35745 35763 65307 65307 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_1 2 489.7829895019531 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 118.2 1 121.8 121.3 122.3 3.6036 0 0 0 0.40798 1 29324 29324 0 0 1 + 56817 24692 35745 35763 65308 65308 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 490.2768859863281 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 38.837 1 42.216 41.716 42.716 3.3785 0 0 0 0.40798 1 7562 7562 0 0 1 + 56818 24692 35745 35763 65309 65309 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 489.8065490722656 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 55.885 1 59.195 58.695 59.695 3.3102 0 0 0 0.40798 1 12749 12749 0 0 1 + 56819 24692 35745 35763 65310 65310 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 489.8064880371094 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 79.019 1 82.374 81.874 82.874 3.3554 0 0 0 0.40798 1 19649 19649 0 0 1 + 56820 24692 35745 35763 65311 65311 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_2 3 489.8059387207031 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 102.7 1 106.22 105.72 106.72 3.5231 0 0 0 0.40798 1 24993 24993 0 0 1 + 56821 24692 35745 35763 65312 65312 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_3 4 489.8062744140625 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 45.078 1 48.322 47.822 48.822 3.2441 0 0 0 0.40798 1 9516 9516 0 0 1 + 56822 24692 35745 35763 65313 65313 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN47_class_I_Rep_3 4 489.8055725097656 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 115.98 1 119.45 118.95 119.95 3.462 0 0 0 0.40798 1 28532 28532 0 0 1 + 56823 24692 35745 35763 65314 65314 0.10866537621370753 YLLILCIK 8 Unmodified _YLLILCIK_ 0 0 0 REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense REV__L1M5_dup49059|chr17:82258871-82259399:-|1.8805270786609976|0.2328502316035252|3.01|151.0|22|3|sense MSMS UPN48_class_I_Rep_3 7 490.2794494628906 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 112.62 1 116.28 115.78 116.78 3.6614 0 0 0 0.40798 1 26759 26759 0 0 1 + 56824 24692 35745 35763 65315 65315 0.10866537621370753 YLLILHPI 8 Unmodified _YLLILHPI_ 0 0 0 REV__ENSG00000169306|ENST00000378993|IL1RAPL1 REV__ENSG00000169306|ENST00000378993|IL1RAPL1 MSMS UPN47_class_I_Rep_3 4 491.309326171875 2 491.310221 980.605889 NaN NaN NaN NaN NaN NaN NaN 110.66 1 114.19 113.69 114.69 3.529 0 0 0 0.40738 1 27153 27153 0.79363 0 1 + 56825 20308 35746 35764 65316 65316 0.11481013213312963 YLLILTTIL 9 Unmodified _YLLILTTIL_ 0 0 0 ENSG00000279395|ENST00000625203|OR5L1;ENSG00000205030|ENST00000378397|OR5L2 ENSG00000279395|ENST00000625203|OR5L1 ENSG00000279395|ENST00000625203|OR5L1 MSMS UPN46_class_I_Rep_3 1 531.843505859375 2 531.844093 1061.67363 NaN NaN NaN NaN NaN NaN NaN 72.089 1 72.089 71.589 72.589 0 0 0 0 0.4029 1 16643 16643 0 0 1 56826 5548 35747 35765 65317 65317 0.14526418353466397 YLLILYVCY 9 Unmodified _YLLILYVCY_ 0 0 0 REV__L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|299|3|anti-sense REV__L1PA10_dup6063|chr15:76627361-76632189:-|1.7052697435337758|0.0527275620148948|5.02|151.0|299|3|anti-sense MSMS UPN48_class_I_Rep_1 5 581.8173217773438 2 581.814479 1161.6144 NaN NaN NaN NaN NaN NaN NaN 66.066 1 69.518 69.018 70.018 3.4516 0 0 0 0.12887 1 15079 15079 20.871 2.7362 1 + 56827 28976 35748 35766 65318 65318 0.04006199067612215 YLLINEEK 8 Unmodified _YLLINEEK_ 0 0 0 REV__nc|ENSG00000121446|A5PLK6-5|RGSL1 REV__nc|ENSG00000121446|A5PLK6-5|RGSL1 MULTI-SECPEP UPN48_class_I_Rep_2 6 510.7785949707031 2 511.281857 1020.54916 0.3604 0.00018427 -2.6178 -0.0013384 -2.2574 -0.0011542 511.2800264414958 25.953 0.063654 29.586 29.574 29.638 3.6332 6 5 2 0 0 0 0.72333 1 3249 3249 2.3027 0 1 36079 + 56828 18728 35749 35767 65319 65319 0.03970920866140659 YLLINVFII 9 Unmodified _YLLINVFII_ 0 0 0 L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.3439331054688 2 554.344261 1106.67397 0.48926 0.00027122 0.03235 1.7933E-05 0.52161 0.00028915 554.3441390944338 77.275 0.20705 80.886 80.788 80.995 3.6116 37 20 2 0 0 0 0.25207 1 18262 18262 16.942 4.4107 1 98853 56829 13341 35750 35768 65320 65320 0.12489838073338433 YLLINVFII 9 Unmodified _YLLINVFII_ 0 0 0 L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 554.344261 1106.67397 0.48926 0.00027122 0.03235 1.7933E-05 0.52161 0.00028915 554.3441390944338 77.275 0.20705 80.886 80.788 80.995 3.6116 -0.031659 3.3095E-05 NaN 16.942 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 98853 56830 13341 35750 35768 0.12489838073338433 YLLINVFII 9 Unmodified _YLLINVFII_ 0 0 0 L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense L1MEf_dup9750|chr15:50565275-50565822:+|1.2203900739573337|0.1033290089614518|3.56|151.0|33|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 554.344261 1106.67397 0.43472 0.00024099 -0.079495 -4.4068E-05 0.35523 0.00019692 554.344192265026 77.348 0.10699 80.95 80.924 81.031 3.6016 0.031659 -9.0907E-05 NaN 16.942 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 78497 56831 13341 35750 35768 0.12489838073338433 YLLIRAYI 8 Unmodified _YLLIRAYI_ 0 0 0 REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|111|3|anti-sense REV__L1ME3E_dup2349|chr8:51815656-51817309:+|1.043609152411341|0.1263631174296841|3.05|149.0|111|3|anti-sense MSMS UPN47_class_I_Rep_3 4 512.8118896484375 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 40.059 1 43.296 42.796 43.796 3.2372 0 0 0 0.40364 1 7984 7984 5.7604 0 1 + 56832 28153 35751 35769 65321 65321 0.10084111724984268 YLLKNPVI 8 Unmodified _YLLKNPVI_ 0 0 0 HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|74|1|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|74|1|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 480.3000793457031 2 480.299853 958.585153 0.11391 5.4713E-05 0.10462 5.0249E-05 0.21853 0.00010496 480.29976406280673 56.837 0.77737 60.294 60.063 60.841 3.4572 159 71 3 0 0 0 0.82752 1 12954 12954 19.439 0 1 543430 56833 8128 35752 35770 65322 65322 0.10420422833658449 YLLKNPVI 8 Unmodified _YLLKNPVI_ 0 0 0 HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|74|1|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|74|1|anti-sense HERVFH19-int_dup9|chr2:37132610-37135454:+|1.8525550095626149|0.0900690862128805|4.36|151.0|74|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 480.2999267578125 2 480.299853 958.585153 0.0094432 4.5355E-06 0.1892 9.0872E-05 0.19864 9.5407E-05 480.299843215784 57.345 0.99751 60.513 60.207 61.205 3.1681 172 83 3 0 0 0 0.82752 1 13163 13163 19.439 0 1 600020 56834 8128 35752 35770 65323 65323 0.10420422833658449 YLLKVFNIFE 10 Unmodified _YLLKVFNIFE_ 0 0 0 REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|95|2|anti-sense REV__L1M2_dup9102|chr21:15781465-15783675:+|16.070023322851196|0.1805436335784144|6.48|151.0|95|2|anti-sense MSMS UPN47_class_I_Rep_3 4 643.3632202148438 2 643.363182 1284.71181 NaN NaN NaN NaN NaN NaN NaN 107.03 1 110.57 110.07 111.07 3.5382 0 0 0 0.53105 1 26136 26136 3.5965 0 1 + 56835 24249 35753 35771 65324 65324 0.08084304268118103 YLLKYLIYLVF 11 Unmodified _YLLKYLIYLVF_ 0 0 0 REV__L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|84|1|anti-sense REV__L1MA8_dup8138|chr12:93692057-93693800:+|1.3268938649307955|0.0295805381419223|5.49|151.0|84|1|anti-sense MSMS UPN48_class_I_Rep_1 5 483.29150390625 3 483.291497 1446.85266 NaN NaN NaN NaN NaN NaN NaN 34.032 1 37.552 37.052 38.052 3.5201 0 0 0 0.38417 1 5391 5391 0.094841 0 1 + 56836 25575 35754 35772 65325 65325 0.14710882921531265 YLLLCENW 8 Unmodified _YLLLCENW_ 0 0 0 REV__L1ME3_dup5458|chr10:38014432-38014887:-|1.5321575294864185|0.2316191402623751|2.73|151.0|29|3|anti-sense REV__L1ME3_dup5458|chr10:38014432-38014887:-|1.5321575294864185|0.2316191402623751|2.73|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 527.2572021484375 2 527.257328 1052.5001 NaN NaN NaN NaN NaN NaN NaN 17.524 1 21.176 20.676 21.676 3.6518 0 0 0 0.40738 1 1039 1039 0.79363 0 1 + 56837 27959 35755 35773 65326 65326 -0.02404690694470446 YLLLFHNKV 9 Unmodified _YLLLFHNKV_ 0 0 0 REV__ENST00000446527.5_1_1:101542987-101549071:+|nuORF REV__ENST00000446527.5_1_1:101542987-101549071:+|nuORF MSMS UPN48_class_I_Rep_3 7 573.83984375 2 573.837134 1145.65972 NaN NaN NaN NaN NaN NaN NaN 40.826 1 44.477 43.977 44.977 3.6509 0 0 0 0.39428 1 7307 7307 2.0598 0 1 + 56838 22360 35756 35774 65327 65327 0.09271185645025071 YLLLFRIIGM 10 Unmodified _YLLLFRIIGM_ 0 0 0 REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF MSMS UPN47_class_I_Rep_1 2 619.8693237304688 2 619.87012 1237.72569 NaN NaN NaN NaN NaN NaN NaN 86.472 1 90.087 89.587 90.587 3.6153 0 0 0 0.53105 1 21602 21602 1.6526 0 1 + 56839 22541 35757 35775 65328 65328 0.11633258495567134 YLLLFVRK 8 Unmodified _YLLLFVRK_ 0 0 0 REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|274|3|anti-sense REV__L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|274|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.3377685546875 2 526.33677 1050.65899 NaN NaN NaN NaN NaN NaN NaN 94.037 1 97.773 97.273 98.273 3.736 0 0 0 0.40738 1 23373 23373 0.79363 0 1 + 56840 29293 35758 35776 65329 65329 0.1356839099598801 YLLLGRNP 8 Unmodified _YLLLGRNP_ 0 0 0 MER21B_dup2138|chr14:102615842-102616206:-|1.5439205269735636|0.0041888901085062|8.53|151.0|6|1|sense MER21B_dup2138|chr14:102615842-102616206:-|1.5439205269735636|0.0041888901085062|8.53|151.0|6|1|sense MER21B_dup2138|chr14:102615842-102616206:-|1.5439205269735636|0.0041888901085062|8.53|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 473.27996826171875 2 473.279452 944.544351 NaN NaN NaN NaN NaN NaN NaN 50.203 1 53.824 53.324 54.324 3.621 0 0 0 0.38221 1 10160 10160 14.582 0 1 56841 15868 35759 35777 65330 65330 0.06986081514037323 YLLLKHHE 8 Unmodified _YLLLKHHE_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MSMS UPN48_class_I_Rep_3 7 526.7981567382812 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 24.958 1 28.727 28.227 29.227 3.769 0 0 0 0.40738 1 2968 2968 0.79363 0 1 + 56842 21131 35760 35778 65331 65331 0.05773753059793307 YLLLLWLPV 9 Unmodified _YLLLLWLPV_ 0 0 0 L1M1_dup1494|chr3:52595362-52596157:-|3.723350210372867|0.0367906269720664|6.66|151.0|39|2|anti-sense L1M1_dup1494|chr3:52595362-52596157:-|3.723350210372867|0.0367906269720664|6.66|151.0|39|2|anti-sense L1M1_dup1494|chr3:52595362-52596157:-|3.723350210372867|0.0367906269720664|6.66|151.0|39|2|anti-sense MSMS UPN46_class_I_Rep_3 1 565.352783203125 2 565.354628 1128.6947 NaN NaN NaN NaN NaN NaN NaN 90.786 1 90.786 90.286 91.286 0 0 0 0 0.22893 1 21899 21899 14.582 0 1 56843 8491 35761 35779 65332 65332 0.13550428452981578 YLLLLWLVY 9 Unmodified _YLLLLWLVY_ 0 0 0 REV__L1MC4_dup11137|chr7:131084698-131085315:+|1.101996599688288|0.0294967860446563|5.22|150.0|44|3|anti-sense REV__L1MC4_dup11137|chr7:131084698-131085315:+|1.101996599688288|0.0294967860446563|5.22|150.0|44|3|anti-sense MSMS UPN46_class_I_Rep_3 1 598.3578491210938 2 598.359911 1194.70527 NaN NaN NaN NaN NaN NaN NaN 90.034 1 90.034 89.534 90.534 0 0 0 0 0.40038 1 21693 21693 0.6015 0 1 + 56844 26801 35762 35780 65333 65333 0.11570411107413747 YLLLLYFMP 9 Unmodified _YLLLLYFMP_ 0 0 0 ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ MSMS UPN46_class_I_Rep_3 1 586.823486328125 2 586.824846 1171.63514 NaN NaN NaN NaN NaN NaN NaN 106.65 1 106.65 106.15 107.15 0 0 0 0 0.40038 1 26007 26007 0.6015 0 1 56845 2273 35763 35781 65334 65334 0.056187894472714106 YLLLMHNR 8 Unmodified _YLLLMHNR_ 0 0 0 REV__ENSG00000120008|ENST00000263461|WDR11 REV__ENSG00000120008|ENST00000263461|WDR11 MSMS UPN48_class_I_Rep_1 5 530.2919921875 2 530.292037 1058.56952 NaN NaN NaN NaN NaN NaN NaN 27.16 1 30.723 30.223 31.223 3.5629 0 0 0 0.40738 1 3454 3454 0.79363 0 1 + 56846 18696 35764 35782 65335 65335 0.04257813044955583 YLLLPYLEVL 10 Unmodified _YLLLPYLEVL_ 0 0 0 REV__L1PREC2_dup574|chr2:24106620-24108597:+|2.7414865496564884|0.3266246722809582|3.07|151.0|107|2|anti-sense REV__L1PREC2_dup574|chr2:24106620-24108597:+|2.7414865496564884|0.3266246722809582|3.07|151.0|107|2|anti-sense MSMS UPN48_class_I_Rep_2 6 618.3699951171875 2 618.367933 1234.72131 NaN NaN NaN NaN NaN NaN NaN 83.239 1 86.921 86.421 87.421 3.6814 0 0 0 0.53105 1 19778 19778 1.6526 0 1 + 56847 30729 35765 35783 65336 65336 0.11334072553677288 YLLLSQHP 8 Unmodified _YLLLSQHP_ 0 0 0 REV__L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|41|1|anti-sense REV__L1MB7_dup15225|chr11:102435217-102436078:+|2.038582253022532|0.0292173414554713|6.12|151.0|41|1|anti-sense MSMS UPN47_class_I_Rep_1 2 485.7696228027344 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 24.161 1 27.891 27.391 28.391 3.7298 0 0 0 0.40738 1 3112 3112 0.79363 0 1 + 56848 26149 35766 35784 65337 65337 0.0423837527713431 YLLLVFFFV 9 Unmodified _YLLLVFFFV_ 0 0 0 REV__L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense REV__L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|238|2|anti-sense MSMS UPN48_class_I_Rep_3 7 581.30078125 2 580.841354 1159.66815 NaN NaN NaN NaN NaN NaN NaN 71.201 1 74.719 74.219 75.219 3.5185 0 0 0 0.39326 1 16517 16517 2.3027 0 1 + 56849 30627 35767 35785 65338 65338 0.09470739561652408 YLLLVHTPV 9 Unmodified _YLLLVHTPV_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 527.818359375 2 527.81841 1053.62227 0.34384 0.00018149 -0.18246 -9.6304E-05 0.16139 8.5183E-05 527.8183591388552 76.41 0.41454 79.825 79.616 80.031 3.4149 35 29 2 0 0 0 0.15878 1 18911 18911 24.674 0 1 178060 56850 8398 35768 35786 65339 65339 0.09760094379407747 YLLLVHTPV 9 Unmodified _YLLLVHTPV_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 527.81884765625 2 527.81841 1053.62227 0.18663 9.8506E-05 -0.071259 -3.7612E-05 0.11537 6.0894E-05 527.8182132282582 76.475 0.18345 79.797 79.67 79.853 3.3216 21 17 2 0 0 0 0.23311 1 18937 18937 18.135 0 1 96971 56851 8398 35768 35786 65340 65340 0.09760094379407747 YLLLVHTPV 9 Unmodified _YLLLVHTPV_ 0 0 0 HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense HERVL40-int_dup697|chr9:100213981-100216444:-|3.5730411751197595|0.1298586077048144|4.78|151.0|69|3|sense MSMS UPN47_class_I_Rep_2 3 527.817626953125 2 527.81841 1053.62227 NaN NaN NaN NaN NaN NaN NaN 76.31 1 79.631 79.131 80.131 3.3216 0 0 0 0.1724 1 18885 18885 18.135 0 1 56852 8398 35768 35786 65341 65341 0.09760094379407747 YLLLVLHPS 9 Unmodified _YLLLVLHPS_ 0 0 0 REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.8189086914062 2 527.81841 1053.62227 0.38377 0.00020256 0.024016 1.2676E-05 0.40779 0.00021524 527.8184030688399 76.814 0.28864 80.083 80.002 80.291 3.269 44 32 2 0 0 0 0.23311 1 19108 19108 18.135 0 1 202140 + 56853 30624 35769 35787 65342 65342 0.09760094379430484 YLLLVLHPS 9 Unmodified _YLLLVLHPS_ 0 0 0 REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 527.818115234375 2 527.81841 1053.62227 0.38496 0.00020319 0.036581 1.9308E-05 0.42154 0.0002225 527.8185514944673 77.18 0.21627 80.449 80.364 80.58 3.269 26 19 2 0 0 0 0.23311 1 19227 19227 18.135 0 1 73260 + 56854 30624 35769 35787 65343 65343 0.09760094379430484 YLLLVLHPS 9 Unmodified _YLLLVLHPS_ 0 0 0 REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 527.81841 1053.62227 0.34645 0.00018286 -0.39177 -0.00020678 -0.045317 -2.3919E-05 527.8183116454059 76.815 0.29576 80.23 80.14 80.436 3.4149 -0.10927 -0.0002283 NaN 18.135 30 27 2 NaN NaN NaN NaN 0 NaN NaN 0 60776 + 56855 30624 35769 35787 0.09760094379430484 YLLLVLHPS 9 Unmodified _YLLLVLHPS_ 0 0 0 REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 527.81841 1053.62227 0.34556 0.0001824 -0.40094 -0.00021162 -0.055378 -2.9229E-05 527.8181201894796 76.682 0.10146 80.097 80.031 80.132 3.4149 0.007126 -0.00030225 NaN 18.135 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 42912 + 56856 30624 35769 35787 0.09760094379430484 YLLLVLHPS 9 Unmodified _YLLLVLHPS_ 0 0 0 REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 527.81841 1053.62227 0.38496 0.00020319 0.036581 1.9308E-05 0.42154 0.0002225 527.8185514944673 77.18 0.21627 80.449 80.364 80.58 3.269 0.10927 0.00022388 NaN 18.135 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 73260 + 56857 30624 35769 35787 0.09760094379430484 YLLLVLHPS 9 Unmodified _YLLLVLHPS_ 0 0 0 REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense REV__L1PBa_dup105|chr1:198211725-198213294:+|1.349426729789517|0.0183668692796598|6.2|151.0|29|2|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 527.81841 1053.62227 0.38377 0.00020256 0.024016 1.2676E-05 0.40779 0.00021524 527.8184030688399 76.814 0.28864 80.083 80.002 80.291 3.269 -0.007126 0.00014635 NaN 18.135 44 32 2 NaN NaN NaN NaN 0 NaN NaN 0 202140 + 56858 30624 35769 35787 0.09760094379430484 YLLLVSSI 8 Unmodified _YLLLVSSI_ 0 0 0 MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.280029296875 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 45.727 1 49.08 48.58 49.58 3.3534 0 0 0 0.40746 1 9663 9663 0.69038 0 1 56859 16471 35770 35788 65344 65344 0.08561027705434299 YLLLVSSI 8 Unmodified _YLLLVSSI_ 0 0 0 MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2796936035156 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 45.55 1 48.794 48.294 49.294 3.2441 0 0 0 0.40746 1 9662 9662 0.69038 0 1 56860 16471 35770 35788 65345 65345 0.08561027705434299 YLLLVSSI 8 Unmodified _YLLLVSSI_ 0 0 0 MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MLT1J1-int_dup377|chr12:11161387-11162583:+|2.0962066293365225|0.067771542102295|4.95|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_3 4 454.2799072265625 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 45.662 1 48.906 48.406 49.406 3.2441 0 0 0 0.40746 1 9696 9696 0.69038 0 1 56861 16471 35770 35788 65346 65346 0.08561027705434299 YLLMYYYI 8 Unmodified _YLLMYYYI_ 0 0 0 L1PB4_dup2264|chr5:80163155-80164375:-|5.201220289675051|0.2152176434139558|4.59|151.0|73|3|anti-sense L1PB4_dup2264|chr5:80163155-80164375:-|5.201220289675051|0.2152176434139558|4.59|151.0|73|3|anti-sense L1PB4_dup2264|chr5:80163155-80164375:-|5.201220289675051|0.2152176434139558|4.59|151.0|73|3|anti-sense MSMS UPN48_class_I_Rep_1 5 570.8364868164062 2 571.285554 1140.55656 NaN NaN NaN NaN NaN NaN NaN 48.633 1 52.157 51.657 52.657 3.5239 0 0 0 0.40581 1 9742 9742 2.8892 0 1 56862 15301 35771 35789 65347 65347 -0.008100628577949465 YLLNEAFNAF 10 Unmodified _YLLNEAFNAF_ 0 0 0 L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|46|1|anti-sense L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|46|1|anti-sense L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|46|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 601.2981567382812 2 601.298039 1200.58152 0.48659 0.00029258 0.24536 0.00014753 0.73194 0.00044012 601.2980869678266 89.192 0.69745 92.93 92.699 93.396 3.7379 200 78 3 0 0 0 0.21503 3 21223 21223;21254;21334 52.268 5.7126 1 684930 56863 8663 35772 35790 65348;65349;65350 65348 -0.010742917308789401 YLLNEAFNAF 10 Unmodified _YLLNEAFNAF_ 0 0 0 L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|46|1|anti-sense L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|46|1|anti-sense L1M2_dup1377|chr3:11799638-11800886:+|1.8459326690424012|0.2810564633575432|2.72|151.0|46|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 601.2990112304688 2 601.298039 1200.58152 0.55393 0.00033308 0.17116 0.00010292 0.7251 0.000436 601.298077351519 89.273 0.72399 93.102 92.742 93.466 3.8293 191 88 3 0 0 0 0.21503 5 21204 21113;21140;21172;21204;21236 52.268 0 1 577620 56864 8663 35772 35790 65351;65352;65353;65354;65355 65354 -0.010742917308789401 YLLNHCCYTF 10 Unmodified _YLLNHCCYTF_ 0 0 0 L1M4a2_dup952|chr8:73512753-73514112:-|1.8879649437075283|0.0378498184509501|5.64|151.0|89|3|anti-sense L1M4a2_dup952|chr8:73512753-73514112:-|1.8879649437075283|0.0378498184509501|5.64|151.0|89|3|anti-sense L1M4a2_dup952|chr8:73512753-73514112:-|1.8879649437075283|0.0378498184509501|5.64|151.0|89|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 638.7787475585938 2 638.778102 1275.54165 0.35536 0.000227 -0.71118 -0.00045429 -0.35582 -0.00022729 638.7777154289054 47.507 0.36755 50.748 50.46 50.828 3.2405 33 24 2 0 0 0 0.56078 1 10249 10249 3.2813 0.97858 1 154020 56865 8987 35773 35791 65356 65356 -0.08509877997448712 YLLNISMLK 9 Unmodified _YLLNISMLK_ 0 0 0 MLT1B_dup979|chr1:209772117-209772492:-|1.1431821985497133|0.1176187005922371|3.28|151.0|6|2|sense MLT1B_dup979|chr1:209772117-209772492:-|1.1431821985497133|0.1176187005922371|3.28|151.0|6|2|sense MLT1B_dup979|chr1:209772117-209772492:-|1.1431821985497133|0.1176187005922371|3.28|151.0|6|2|sense MSMS UPN48_class_I_Rep_1 5 547.8200073242188 2 547.817553 1093.62055 NaN NaN NaN NaN NaN NaN NaN 93.306 1 96.93 96.43 97.43 3.624 0 0 0 0.38478 1 22422 22422 4.3292 2.0265 1 56866 16284 35774 35792 65357 65357 0.07748717299136842 YLLNRDAVL 9 Unmodified _YLLNRDAVL_ 0 0 0 L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 539.309814453125 2 538.808574 1075.60259 0.58259 0.0003139 -0.011503 -6.1978E-06 0.57109 0.00030771 538.8083745544751 54.927 0.2687 58.483 58.336 58.605 3.5559 19 14 2 0 0 0 0.36392 1 11662 11662 10.074 1.4806 1 87610 56867 12362 35775 35793 65358 65358 0.06781718368665679 YLLNRDAVL 9 Unmodified _YLLNRDAVL_ 0 0 0 L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 538.808574 1075.60259 0.4144 0.00022328 0.12226 6.5876E-05 0.53666 0.00028916 538.8085463167658 55.035 0.18461 58.544 58.374 58.558 3.5082 0.0302 8.3586E-05 NaN 10.074 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 178680 56868 12362 35775 35793 0.06781718368665679 YLLNRDAVL 9 Unmodified _YLLNRDAVL_ 0 0 0 L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|160|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 538.808574 1075.60259 0.58259 0.0003139 -0.011503 -6.1978E-06 0.57109 0.00030771 538.8083745544751 54.927 0.2687 58.483 58.336 58.605 3.5559 -0.0302 -6.0561E-05 NaN 10.074 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 87610 56869 12362 35775 35793 0.06781718368665679 YLLNSNVTTV 10 Unmodified _YLLNSNVTTV_ 0 0 0 REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|195|3|sense REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|195|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.3182983398438 2 562.303321 1122.59209 0.51828 0.00029143 -0.45111 -0.00025366 0.067165 3.7767E-05 562.3029775081918 55.99 1.0702 59.295 58.855 59.925 3.3046 158 63 3 0 0 0 0.51021 1 12830 12830 10.8 0 1 411620 + 56870 24969 35776 35794 65359 65359 0.035696909235639396 YLLNSNVTTV 10 Unmodified _YLLNSNVTTV_ 0 0 0 REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|195|3|sense REV__L1MA3_dup1451|chr3:60464222-60470016:-|2.962604043598178|0.0561506620812474|5.72|151.0|195|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.3185424804688 2 562.303321 1122.59209 0.40353 0.00022691 -0.32923 -0.00018513 0.074298 4.1778E-05 562.3030353278743 56.145 0.97464 59.317 58.892 59.867 3.1721 153 62 3 0 0 0 0.51021 1 12963 12963 10.8 0 1 358090 + 56871 24969 35776 35794 65360 65360 0.035696909235639396 YLLPAIVHI 9 Unmodified _YLLPAIVHI_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;EIF4A1-DDX5|1|fusion;ENSG00000108654|ENST00000225792|DDX5;chr22:38498150-38498405|34|17.29|0.2|6.44|-|0|DDX17,None|1;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17 nc|ENSG00000100201|Q92841-1|DDX17 MULTI-MSMS UPN46_class_I_Rep_3 1 519.8211669921875 2 519.820953 1037.62735 0.31945 0.00016605 -0.038297 -1.9907E-05 0.28115 0.00014615 519.8209157469164 83.17 0.35104 83.17 82.879 83.23 0 61 31 3 0 0 0 0.0053953 1 19744 19744 79.935 34.185 1 5434600 56872 662;1481 35777 35795 65361 65361 0.11004398242016578 YLLPAIVHI 9 Unmodified _YLLPAIVHI_ 0 0 0 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;EIF4A1-DDX5|1|fusion;ENSG00000108654|ENST00000225792|DDX5;chr22:38498150-38498405|34|17.29|0.2|6.44|-|0|DDX17,None|1;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000581230.5_1_17:62498125-62502378:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17 nc|ENSG00000100201|Q92841-1|DDX17 MULTI-MSMS UPN46_class_I_Rep_3 1 519.8211669921875 2 519.820953 1037.62735 0.32025 0.00016647 -0.044247 -2.3001E-05 0.27601 0.00014347 519.8209047927392 83.689 0.61296 83.689 83.23 83.843 0 135 62 4 0 0 0 0.12962 1 19915 19915 28.173 10.038 1 7536100 56873 662;1481 35777 35795 65362 65362 0.11004398242016578 YLLPKFRLV 9 Unmodified _YLLPKFRLV_ 0 0 0 L1MEc_dup12863|chr11:72882713-72883650:+|2.4988718959960146|0.009284620083204|8.07|151.0|53|2|anti-sense L1MEc_dup12863|chr11:72882713-72883650:+|2.4988718959960146|0.009284620083204|8.07|151.0|53|2|anti-sense L1MEc_dup12863|chr11:72882713-72883650:+|2.4988718959960146|0.009284620083204|8.07|151.0|53|2|anti-sense MSMS UPN46_class_I_Rep_3 1 574.8617553710938 2 574.863152 1147.71175 NaN NaN NaN NaN NaN NaN NaN 25.525 1 25.525 25.025 26.025 0 0 0 0 0.40038 1 3515 3515 0.6015 0 1 56874 13013 35778 35796 65363 65363 0.14380349058797037 YLLPLEACGF 10 Unmodified _YLLPLEACGF_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MSMS UPN48_class_I_Rep_2 6 563.29541015625 2 563.286085 1124.55762 NaN NaN NaN NaN NaN NaN NaN 61.312 1 64.79 64.29 65.29 3.4785 0 0 0 0.53105 1 13610 13610 11.64 0 1 + 56875 20500 35779 35797 65364 65364 0.00032151511118172493 YLLPPALLY 9 Unmodified _YLLPPALLY_ 0 0 0 REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|226|3|anti-sense REV__L1PB1_dup7984|chrX:81312898-81316939:-|2.4171683568372497|0.0273256038851592|6.47|150.0|226|3|anti-sense MSMS UPN46_class_I_Rep_3 1 531.8167114257812 2 531.815336 1061.61612 NaN NaN NaN NaN NaN NaN NaN 84.422 1 84.422 83.922 84.922 0 0 0 0 0.39326 1 20084 20084 2.3027 0 1 + 56876 30494 35780 35798 65365 65365 0.08777576147895161 YLLPWDTFF 9 Unmodified _YLLPWDTFF_ 0 0 0 REV__Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|48|3|sense REV__Tigger1_dup2198|chr3:47730883-47732828:-|3.986469527722955|0.0394217446294702|6.66|151.0|48|3|sense MSMS UPN48_class_I_Rep_3 7 601.2986450195312 2 601.30005 1200.58555 NaN NaN NaN NaN NaN NaN NaN 89.762 1 93.591 93.091 94.091 3.8293 0 0 0 0.35339 1 21317 21317 7.9102 0.80843 1 + 56877 32400 35781 35799 65366 65366 -0.006722022371832281 YLLQFDYV 8 Unmodified _YLLQFDYV_ 0 0 0 L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|174|3|anti-sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|174|3|anti-sense L1MA5A_dup1104|chr5:37628223-37631268:-|2.730466906966916|0.0300532251021198|6.51|151.0|174|3|anti-sense MSMS UPN48_class_I_Rep_2 6 530.7696533203125 2 530.771126 1059.5277 NaN NaN NaN NaN NaN NaN NaN 49.337 1 53.055 52.555 53.555 3.7175 0 0 0 0.36705 1 9958 9958 18.135 0 1 56878 9927 35782 35800 65367 65367 0.00031535837410956447 YLLQFIQK 8 Unmodified _YLLQFIQK_ 0 0 0 REV__L1MC5_dup514|chr1:155555882-155556101:+|1.0112380684301203|0.0042763784309851|7.89|151.0|16|3|anti-sense REV__L1MC5_dup514|chr1:155555882-155556101:+|1.0112380684301203|0.0042763784309851|7.89|151.0|16|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 526.8114013671875 2 526.810585 1051.60662 0.33598 0.000177 -0.25668 -0.00013522 0.079296 4.1774E-05 526.8107420484015 76.039 0.13277 79.443 79.346 79.479 3.4034 16 12 2 0 0 0 0.82752 1 18795 18795 9.3474 0 1 39461 + 56879 27083 35783 35801 65368 65368 0.08287807862370755 YLLQFIQK 8 Unmodified _YLLQFIQK_ 0 0 0 REV__L1MC5_dup514|chr1:155555882-155556101:+|1.0112380684301203|0.0042763784309851|7.89|151.0|16|3|anti-sense REV__L1MC5_dup514|chr1:155555882-155556101:+|1.0112380684301203|0.0042763784309851|7.89|151.0|16|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 526.810585 1051.60662 0.33598 0.000177 -0.25668 -0.00013522 0.079296 4.1774E-05 526.8107420484015 76.039 0.13277 79.443 79.346 79.479 3.4034 -0.069832 -0.00019123 NaN 9.3474 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 39461 + 56880 27083 35783 35801 0.08287807862370755 YLLQFIQK 8 Unmodified _YLLQFIQK_ 0 0 0 REV__L1MC5_dup514|chr1:155555882-155556101:+|1.0112380684301203|0.0042763784309851|7.89|151.0|16|3|anti-sense REV__L1MC5_dup514|chr1:155555882-155556101:+|1.0112380684301203|0.0042763784309851|7.89|151.0|16|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 526.810585 1051.60662 0.15644 8.2416E-05 0.0040177 2.1166E-06 0.16046 8.4533E-05 526.8104805562439 76.261 0.18414 79.582 79.498 79.683 3.3216 0.069832 8.3446E-05 NaN 9.3474 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 62054 + 56881 27083 35783 35801 0.08287807862370755 YLLRHYLIH 9 Unmodified _YLLRHYLIH_ 0 0 0 ENSG00000220804.8,LINC01881,chr2,+,I8.1,242138889,242140233|46|3.82|1|intron ENSG00000220804.8,LINC01881,chr2,+,I8.1,242138889,242140233|46|3.82|1|intron ENSG00000220804.8,LINC01881,chr2,+,I8.1,242138889,242140233|46|3.82|1|intron MSMS UPN48_class_I_Rep_1 5 614.3524780273438 2 614.353483 1226.69241 NaN NaN NaN NaN NaN NaN NaN 29.602 1 33.152 32.652 33.652 3.5499 0 0 0 0.40038 1 4138 4138 0.6015 0 1 56882 5642 35784 35802 65369 65369 0.08813392767888217 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MSMS UPN48_class_I_Rep_1 5 546.8394165039062 2 546.839154 1091.66375 NaN NaN NaN NaN NaN NaN NaN 93.005 1 96.629 96.129 97.129 3.624 0 0 0 0.40746 1 22348 22348 0.69038 0 1 + 56883 29949 35785 35803 65370 65370 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 547.3190307617188 2 546.839154 1091.66375 0.44056 0.00024092 2.5364 0.001387 2.9769 0.0016279 546.8406245464905 93.637 0.055832 97.257 97.217 97.273 3.6208 9 5 2 0 0 0 0.72333 1 22502 22502 6.3541 0 1 76271 + 56884 29949 35785 35803 65371 65371 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 547.3326416015625 2 546.839154 1091.66375 0.44109 0.00024121 1.5729 0.00086012 2.014 0.0011013 546.8396562822599 93.252 0.043449 96.876 96.848 96.891 3.624 7 5 2 0 0 0 0.72333 1 22412 22412 6.3541 0 1 72452 + 56885 29949 35785 35803 65372 65372 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MSMS UPN48_class_I_Rep_3 7 546.8396606445312 2 546.839154 1091.66375 NaN NaN NaN NaN NaN NaN NaN 93.746 1 97.638 97.138 98.138 3.8914 0 0 0 0.40746 1 22222 22222 0.69038 0 1 + 56886 29949 35785 35803 65373 65373 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 546.839154 1091.66375 0.38722 0.00021175 2.454 0.0013419 2.8412 0.0015537 546.8403740840184 96.56 0.043579 96.56 96.526 96.57 0 -0.11222 6.4234E-07 NaN 6.3541 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 74301 + 56887 29949 35785 35803 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 546.839154 1091.66375 0.38767 0.00021199 3.1058 0.0016984 3.4935 0.0019104 546.8400232600773 96.95 0.019409 96.95 96.934 96.953 0 -0.18235 0.00020924 NaN 6.3541 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 26824 + 56888 29949 35785 35803 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 546.839154 1091.66375 0.53693 0.00029361 2.7048 0.0014791 3.2417 0.0017727 546.840434710314 92.86 0.04155 96.581 96.56 96.601 3.7209 -0.091406 0.00027495 NaN 6.3541 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 45928 + 56889 29949 35785 35803 0.12158951867104406 YLLRLRMK 8 Unmodified _YLLRLRMK_ 0 0 0 REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense REV__L1PA6_dup706|chr2:135380868-135387000:+|1.9865895165531808|0.0246063780458073|6.34|151.0|149|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 546.839154 1091.66375 0.48687 0.00026624 4.088 0.0022355 4.5749 0.0025017 547.3438037000469 93.42 0.085503 97.19 97.139 97.225 3.77 0.057283 0.0012835 NaN 6.3541 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 51164 + 56890 29949 35785 35803 0.12158951867104406 YLLRLVGIA 9 Unmodified _YLLRLVGIA_ 0 0 0 LTR19-int_dup165|chr14:60097374-60097973:+|4.109404680817402|0.1181604924780659|5.12|151.0|8|2|sense LTR19-int_dup165|chr14:60097374-60097973:+|4.109404680817402|0.1181604924780659|5.12|151.0|8|2|sense LTR19-int_dup165|chr14:60097374-60097973:+|4.109404680817402|0.1181604924780659|5.12|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 509.3259582519531 2 509.326402 1016.63825 0.23862 0.00012154 0.11986 6.1048E-05 0.35849 0.00018259 509.828096344077 75.61 0.47974 79.014 78.788 79.267 3.4034 57 43 2 0 0 0 0.48846 1 18685 18685 1.8442 0 1 195360 56891 15585 35786 35804 65374 65374 0.1305980061632681 YLLRRKNM 8 Unmodified _YLLRRKNM_ 0 0 0 REV__ENST00000483439.1_1_6:112375437-112376017:+|nuORF REV__ENST00000483439.1_1_6:112375437-112376017:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 547.3326416015625 2 547.318586 1092.62262 0.44825 0.00024534 -0.30851 -0.00016885 0.13975 7.6485E-05 547.3184623535954 93.436 0.28056 97.06 96.861 97.141 3.624 46 34 3 0 0 0 0.82752 1 22412 22412 14.582 2.0501 1 121630 + 56892 22584 35787 35805 65375 65375 0.0800119082762194 YLLVILSPLP 10 Unmodified _YLLVILSPLP_ 0 0 0 ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF MSMS UPN46_class_I_Rep_3 1 564.3587646484375 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 77.328 1 77.328 76.828 77.828 0 0 0 0 0.53105 1 18071 18071 1.8442 0 1 56893 6585 35788 35806 65376 65376 0.14190107244803585 YLLVILSPLP 10 Unmodified _YLLVILSPLP_ 0 0 0 ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF MSMS UPN47_class_I_Rep_2 3 564.3585205078125 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 71.787 1 75.077 74.577 75.577 3.2899 0 0 0 0.53105 1 17566 17566 1.8442 0 1 56894 6585 35788 35806 65377 65377 0.14190107244803585 YLLVILSPLP 10 Unmodified _YLLVILSPLP_ 0 0 0 ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF MSMS UPN47_class_I_Rep_3 4 564.3585205078125 2 564.357368 1126.70018 NaN NaN NaN NaN NaN NaN NaN 71.804 1 75.023 74.523 75.523 3.2188 0 0 0 0.53105 1 17640 17640 1.8442 0 1 56895 6585 35788 35806 65378 65378 0.14190107244803585 YLLVLFWH 8 Unmodified _YLLVLFWH_ 0 0 0 LTR49-int_dup1603|chr12:132997582-132998157:-|1.3114896145511672|0.0508898194588692|4.69|151.0|18|3|sense LTR49-int_dup1603|chr12:132997582-132998157:-|1.3114896145511672|0.0508898194588692|4.69|151.0|18|3|sense LTR49-int_dup1603|chr12:132997582-132998157:-|1.3114896145511672|0.0508898194588692|4.69|151.0|18|3|sense MSMS UPN47_class_I_Rep_1 2 545.8081665039062 2 545.807845 1089.60114 NaN NaN NaN NaN NaN NaN NaN 31.202 1 34.931 34.431 35.431 3.7293 0 0 0 0.40738 1 5202 5202 0.79363 0 1 56896 15663 35789 35807 65379 65379 0.05992129070568808 YLLVPPLM 8 Unmodified _YLLVPPLM_ 0 0 0 ENSG00000278870|ENST00000623849|OR51G1 ENSG00000278870|ENST00000623849|OR51G1 ENSG00000278870|ENST00000623849|OR51G1 MSMS UPN48_class_I_Rep_3 7 473.27911376953125 2 473.277532 944.540511 NaN NaN NaN NaN NaN NaN NaN 50.352 1 53.973 53.473 54.473 3.621 0 0 0 0.37152 1 10206 10206 17.087 0 1 56897 5844 35790 35808 65380 65380 0.06602275695968274 YLLVSSLWL 9 Unmodified _YLLVSSLWL_ 0 0 0 REV__L1MB4_dup2005|chr4:39870801-39871304:+|1.5032137969958883|0.0487708529790405|4.95|151.0|35|3|anti-sense REV__L1MB4_dup2005|chr4:39870801-39871304:+|1.5032137969958883|0.0487708529790405|4.95|151.0|35|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 547.3197631835938 2 547.318243 1092.62193 0.44825 0.00024534 0.31771 0.00017389 0.76596 0.00041922 547.3184623535954 93.436 0.28056 97.06 96.861 97.141 3.624 46 34 3 0 0 0 0.23311 1 22452 22452 18.135 0 1 121630 + 56898 25946 35791 35809 65381 65381 0.07932674659582517 YLLVYQLD 8 Unmodified _YLLVYQLD_ 0 0 0 L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|116|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|116|2|anti-sense L1ME3A_dup5710|chr6:21067664-21069773:-|1.258140243472459|0.0704075020513219|4.16|151.0|116|2|anti-sense MSMS UPN48_class_I_Rep_1 5 513.7789306640625 2 513.778951 1025.54335 NaN NaN NaN NaN NaN NaN NaN 69.135 1 72.59 72.09 73.09 3.4548 0 0 0 0.39624 1 16015 16015 9.3474 0 1 56899 12671 35792 35810 65382 65382 0.031598223544506254 YLLWSVYL 8 Unmodified _YLLWSVYL_ 0 0 0 REV__ENST00000548477.5_1_12:113758555-113770610:-|nuORF REV__ENST00000548477.5_1_12:113758555-113770610:-|nuORF MSMS UPN48_class_I_Rep_3 7 528.3065185546875 2 528.791861 1055.56917 NaN NaN NaN NaN NaN NaN NaN 23.567 1 27.318 26.818 27.818 3.7507 0 0 0 0.40738 1 2601 2601 0.79363 0 1 + 56900 18001 35793 35811 65383 65383 0.04360716596761449 YLLWVTLWC 9 Unmodified _YLLWVTLWC_ 0 0 0 REV__L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|426|3|anti-sense REV__L1PA14_dup2460|chr12:46510153-46517361:-|1.7238480949814146|0.2838095193332229|2.6|150.0|426|3|anti-sense MSMS UPN48_class_I_Rep_3 7 598.8130493164062 2 598.81227 1195.60999 NaN NaN NaN NaN NaN NaN NaN 54.404 1 57.973 57.473 58.473 3.5694 0 0 0 0.40038 1 11434 11434 0.6015 0 1 + 56901 29160 35794 35812 65384 65384 0.020007346447528107 YLLYGLFWY 9 Unmodified _YLLYGLFWY_ 0 0 0 REV__L1PREC2_dup7331|chr19:21830296-21831347:+|1.6673639695351918|0.0694139111587617|4.59|150.0|46|1|anti-sense REV__L1PREC2_dup7331|chr19:21830296-21831347:+|1.6673639695351918|0.0694139111587617|4.59|150.0|46|1|anti-sense MSMS UPN48_class_I_Rep_1 5 619.31787109375 2 619.318243 1236.62193 NaN NaN NaN NaN NaN NaN NaN 41.441 1 44.947 44.447 45.447 3.506 0 0 0 0.40038 1 7555 7555 0.6015 0 1 + 56902 30752 35795 35813 65385 65385 0.013086746595718068 YLLYMLWH 8 Unmodified _YLLYMLWH_ 0 0 0 REV__Tigger3b_dup1637|chr4:67483425-67484344:+|1.897473817208198|0.2869555392631713|2.73|151.0|1|1|sense REV__Tigger3b_dup1637|chr4:67483425-67484344:+|1.897473817208198|0.2869555392631713|2.73|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 569.7915649414062 2 569.791338 1137.56812 NaN NaN NaN NaN NaN NaN NaN 35.868 1 39.535 39.035 40.035 3.6667 0 0 0 0.40738 1 5870 5870 0.79363 0 1 + 56903 32728 35796 35814 65386 65386 0.004841789562078702 YLMCDSLLF 9 Unmodified _YLMCDSLLF_ 0 0 0 REV__L1MA4A_dup5862|chr19:14745265-14745603:-|3.002128025205625|0.0934355959289741|5.01|151.0|23|3|anti-sense REV__L1MA4A_dup5862|chr19:14745265-14745603:-|3.002128025205625|0.0934355959289741|5.01|151.0|23|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 552.2565307617188 2 552.758846 1103.50314 0.53064 0.00029332 0.42788 0.00023651 0.95852 0.00052983 552.7591292640956 77.492 0.12807 81.014 80.915 81.043 3.5221 14 10 2 0 0 0 0.12422 1 18426 18426 2.3027 0 1 117800 + 56904 25338 35797 35815 65387 65387 -0.04447183631964435 YLMHRGKLD 9 Unmodified _YLMHRGKLD_ 0 0 0 nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB;nc|ENSG00000164535|Q8NCG7-3|DAGLB;ENSG00000164535.15,DAGLB,chr7,-,I7.1,6432960,6434761|65|13.77|1|intron;ENSG00000164535.15,DAGLB,chr7,-,I7.1,6432960,6434761|65|13.77|5|intron nc|ENSG00000164535|Q8NCG7-4|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB MULTI-SECPEP UPN48_class_I_Rep_2 6 566.2899780273438 2 566.800226 1131.5859 0.4832 0.00027388 -0.31081 -0.00017617 0.17239 9.7711E-05 566.8000597640475 77.891 0.055008 81.513 81.49 81.545 3.6223 7 5 2 0 0 0 0.11598 1 18464 18464 11.64 2.2929 1 107850 56905 4116 35798 35816 65388 65388 0.025368942110617354 YLMHRGKLD 9 Unmodified _YLMHRGKLD_ 0 0 0 nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB;nc|ENSG00000164535|Q8NCG7-3|DAGLB;ENSG00000164535.15,DAGLB,chr7,-,I7.1,6432960,6434761|65|13.77|1|intron;ENSG00000164535.15,DAGLB,chr7,-,I7.1,6432960,6434761|65|13.77|5|intron nc|ENSG00000164535|Q8NCG7-4|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB MULTI-MATCH UPN48_class_I_Rep_3 7 2 566.800226 1131.5859 0.48766 0.00027641 -0.63723 -0.00036118 -0.14957 -8.4775E-05 566.8001290108305 78.005 0.034973 81.626 81.607 81.642 3.6216 0.056602 -0.00026608 NaN 11.64 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 95809 56906 4116 35798 35816 0.025368942110617354 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.3445434570312 2 554.344603 1106.67465 0.48904 0.0002711 -0.79127 -0.00043863 -0.30223 -0.00016754 554.3441098720408 77.008 0.38299 80.619 80.405 80.788 3.6116 71 38 2 0 0 0 0.82752 1 18163 18163 9.3474 0 1 216780 + 56907 26396 35799 35817 65389 65389 0.12558354241377856 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 554.8463134765625 2 554.344603 1106.67465 0.48926 0.00027122 -0.58593 -0.00032481 -0.096666 -5.3586E-05 554.3441390944338 77.275 0.20705 80.886 80.788 80.995 3.6116 37 20 2 0 0 0 0.82752 2 18267 18267;18308 9.3474 0 1 98853 + 56908 26396 35799 35817 65390;65391 65390 0.12558354241377856 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 554.3442993164062 2 554.344603 1106.67465 NaN NaN NaN NaN NaN NaN NaN 77.513 1 81.124 80.624 81.624 3.6116 0 0 0 0.40364 1 18349 18349 5.7604 0 1 + 56909 26396 35799 35817 65392 65392 0.12558354241377856 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MSMS UPN48_class_I_Rep_2 6 554.343994140625 2 554.344603 1106.67465 NaN NaN NaN NaN NaN NaN NaN 77.529 1 81.14 80.64 81.64 3.6116 0 0 0 0.40364 1 18354 18354 5.7604 0 1 + 56910 26396 35799 35817 65393 65393 0.12558354241377856 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.3448486328125 2 554.344603 1106.67465 0.43599 0.00024169 -0.78203 -0.00043351 -0.34604 -0.00019183 554.3441230449921 76.816 0.20525 80.399 80.253 80.458 3.5831 31 22 2 0 0 0 0.82752 2 18115 18077;18115 9.3474 0 1 103130 + 56911 26396 35799 35817 65394;65395 65395 0.12558354241377856 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 554.3439331054688 2 554.344603 1106.67465 0.43498 0.00024113 -0.7743 -0.00042923 -0.33932 -0.0001881 554.3440718134617 76.993 0.46764 80.594 80.456 80.924 3.6016 56 39 2 0 0 0 0.82752 1 18250 18250 5.7604 0 1 195350 + 56912 26396 35799 35817 65396 65396 0.12558354241377856 YLMKRRKL 8 Unmodified _YLMKRRKL_ 0 0 0 REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense REV__L1MB8_dup263|chr1:44490504-44491662:+|16.2151019713275|0.0029153668431744|12.44|151.0|31|3|sense MSMS UPN48_class_I_Rep_3 7 554.3444213867188 2 554.344603 1106.67465 NaN NaN NaN NaN NaN NaN NaN 77.432 1 81.033 80.533 81.533 3.6016 0 0 0 0.40364 1 18290 18290 5.7604 0 1 + 56913 26396 35799 35817 65397 65397 0.12558354241377856 YLMRKKRP 8 Unmodified _YLMRKKRP_ 0 0 0 LTR64_dup197|chrX:1499463-1499568:+|1.2473933179550174|0.002817684562107|8.79|151.0|7|2|anti-sense LTR64_dup197|chrX:1499463-1499568:+|1.2473933179550174|0.002817684562107|8.79|151.0|7|2|anti-sense LTR64_dup197|chrX:1499463-1499568:+|1.2473933179550174|0.002817684562107|8.79|151.0|7|2|anti-sense MSMS UPN48_class_I_Rep_3 7 546.2846069335938 2 546.328953 1090.64335 NaN NaN NaN NaN NaN NaN NaN 35.766 1 39.433 38.933 39.933 3.6667 0 0 0 0.40746 1 5843 5843 0.69038 0 1 56914 15693 35800 35818 65398 65398 0.10165781207274449 YLMRKWHP 8 Unmodified _YLMRKWHP_ 0 0 0 ENST00000557699.5_1_14:23818379-23821759:-|nuORF ENST00000557699.5_1_14:23818379-23821759:-|nuORF ENST00000557699.5_1_14:23818379-23821759:-|nuORF MSMS UPN47_class_I_Rep_1 2 565.8004150390625 2 565.800029 1129.5855 NaN NaN NaN NaN NaN NaN NaN 15.003 1 18.478 17.978 18.978 3.475 0 0 0 0.40798 1 706 706 0 0 1 56915 7441 35801 35819 65399 65399 0.025895192818779833 YLMRRNRR 8 Unmodified _YLMRRNRR_ 0 0 0 REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|38|1|anti-sense REV__Looper_dup307|chr10:68052194-68053095:-|2.619068113674436|0.0657377714344018|5.32|151.0|38|1|anti-sense MSMS UPN48_class_I_Rep_2 6 582.8302001953125 2 582.830183 1163.64581 NaN NaN NaN NaN NaN NaN NaN 78.601 1 82.223 81.723 82.723 3.6222 0 0 0 0.40746 1 18645 18645 0.69038 0.088878 1 + 56916 30762 35802 35820 65400 65400 0.07053629664960681 YLMRTHTNQ 9 Unmodified _YLMRTHTNQ_ 0 0 0 ENST00000342287.9_2_9:128728684-128729074:+|nuORF ENST00000342287.9_2_9:128728684-128729074:+|nuORF ENST00000342287.9_2_9:128728684-128729074:+|nuORF MSMS UPN48_class_I_Rep_3 7 582.2862548828125 2 582.28494 1162.55533 NaN NaN NaN NaN NaN NaN NaN 42.926 1 46.567 46.067 47.067 3.6415 0 0 0 0.39598 1 7925 7925 1.6526 0 1 56917 6236 35803 35821 65401 65401 -0.019448841739858835 YLMVKRVKG 9 Unmodified _YLMVKRVKG_ 0 0 0 REV__MLT1J_dup4882|chr5:65566146-65566579:-|1.6106472554823037|0.1758033266538624|3.2|151.0|21|1|anti-sense REV__MLT1J_dup4882|chr5:65566146-65566579:-|1.6106472554823037|0.1758033266538624|3.2|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_1 5 547.3328247070312 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 102.04 1 105.65 105.15 106.15 3.612 0 0 0 0.39428 1 24617 24617 2.0598 0 1 + 56918 31778 35804 35822 65402 65402 0.10515245630199388 YLMVKWFKI 9 Unmodified _YLMVKWFKI_ 0 0 0 MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|68|2|sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|68|2|sense MER41-int_dup747|chr7:134087194-134090582:-|1.7022603114363806|0.1375623602550831|3.63|151.0|68|2|sense MSMS UPN48_class_I_Rep_1 5 614.35205078125 2 614.351563 1226.68857 NaN NaN NaN NaN NaN NaN NaN 29.974 1 33.516 33.016 34.016 3.542 0 0 0 0.4007 1 4240 4240 0.52476 0 1 56919 15968 35805 35823 65403 65403 0.08429586949819168 YLMVLMVL 8 Unmodified _YLMVLMVL_ 0 0 0 L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|4|1|sense L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|4|1|sense L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|4|1|sense MSMS UPN47_class_I_Rep_2 3 491.2793273925781 2 491.279218 980.543882 NaN NaN NaN NaN NaN NaN NaN 68.735 1 72.005 71.505 72.505 3.2696 0 0 0 0.40738 1 16652 16652 0.79363 0 1 56920 11647 35806 35824 65404 65404 0.052832024783356246 YLNKEKLGL 9 Unmodified _YLNKEKLGL_ 0 0 0 REV__ENST00000491056.5_1_2:113587940-113590763:-|nuORF REV__ENST00000491056.5_1_2:113587940-113590763:-|nuORF MSMS UPN46_class_I_Rep_3 1 539.2907104492188 2 539.318774 1076.623 NaN NaN NaN NaN NaN NaN NaN 61.876 1 61.876 61.376 62.376 0 0 0 0 0.32573 1 13800 13800 9.3831 0 1 + 56921 18833 35807 35825 65405 65405 0.08774889028472899 YLNQMKKTKN 10 Unmodified _YLNQMKKTKN_ 0 0 0 L1MC5a_dup8123|chr8:53823774-53825209:+|1.0376094785003296|0.0160145400662561|6.02|151.0|13|1|sense L1MC5a_dup8123|chr8:53823774-53825209:+|1.0376094785003296|0.0160145400662561|6.02|151.0|13|1|sense L1MC5a_dup8123|chr8:53823774-53825209:+|1.0376094785003296|0.0160145400662561|6.02|151.0|13|1|sense MSMS UPN48_class_I_Rep_2 6 634.0113525390625 2 634.344997 1266.67544 NaN NaN NaN NaN NaN NaN NaN 45.221 1 48.979 48.479 49.479 3.7579 0 0 0 0.53105 1 8705 8705 1.6526 0 1 56922 11767 35808 35826 65406 65406 0.05277104099764074 YLNSDLEL 8 Unmodified _YLNSDLEL_ 0 0 0 REV__nc|ENSG00000100345|P35579-2|MYH9 REV__nc|ENSG00000100345|P35579-2|MYH9 MULTI-MSMS UPN47_class_I_Rep_1 2 483.742431640625 2 483.742565 965.470577 -0.10875 -5.2605E-05 0.070375 3.4044E-05 -0.03837 -1.8561E-05 483.742517868621 46.505 1.1197 50.205 49.823 50.943 3.6999 183 71 4 0 0 0 0.82752 1 9833 9833 25.399 1.3787 1 1297200 + 56923 18107 35809 35827 65407 65407 -0.013539314389618085 YLNVDGGVIY 10 Unmodified _YLNVDGGVIY_ 0 0 0 REV__L1MA2_dup6697|chr16:10414893-10416510:+|2.3347873255537537|0.1626843651902088|3.84|151.0|12|1|sense REV__L1MA2_dup6697|chr16:10414893-10416510:+|2.3347873255537537|0.1626843651902088|3.84|151.0|12|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 556.7852172851562 2 556.784764 1111.55498 0.37243 0.00020737 0.11513 6.4104E-05 0.48757 0.00027147 556.78470783223 68.458 0.30236 68.458 68.352 68.654 0 58 34 2 0 0 0 0.32646 2 15658 15639;15658 26.268 3.5319 1 172920 + 56924 24936 35810 35828 65408;65409 65409 0.003660193778159737 YLNVDGGVIY 10 Unmodified _YLNVDGGVIY_ 0 0 0 REV__L1MA2_dup6697|chr16:10414893-10416510:+|2.3347873255537537|0.1626843651902088|3.84|151.0|12|1|sense REV__L1MA2_dup6697|chr16:10414893-10416510:+|2.3347873255537537|0.1626843651902088|3.84|151.0|12|1|sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 556.784764 1111.55498 0.37243 0.00020737 0.11513 6.4104E-05 0.48757 0.00027147 556.78470783223 68.458 0.30236 68.458 68.352 68.654 0 0 0 NaN 26.268 58 34 2 NaN NaN NaN NaN 0 NaN NaN 0 172920 + 56925 24936 35810 35828 0.003660193778159737 YLNVLVNQ 8 Unmodified _YLNVLVNQ_ 0 0 0 nc|ENSG00000157510|Q8TED9-4|AFAP1L1;nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1 nc|ENSG00000157510|Q8TED9-4|AFAP1L1 nc|ENSG00000157510|Q8TED9-4|AFAP1L1 MULTI-SECPEP UPN47_class_I_Rep_1 2 482.270751953125 2 481.768917 961.523281 -0.28996 -0.00013969 0.082017 3.9513E-05 -0.20794 -0.00010018 481.76896789019867 37.416 0.43231 41.082 40.847 41.279 3.6652 38 31 2 0 0 0 0.72333 1 7049 7049 4.756 0.42677 1 71197 56926 3765 35811 35829 65410 65410 0.04098071414523474 YLNYHRMK 8 Unmodified _YLNYHRMK_ 0 0 0 REV__L1MA2_dup4218|chrX:81287152-81287558:+|3.6097156077795582|0.158509141388744|4.51|151.0|10|3|sense REV__L1MA2_dup4218|chrX:81287152-81287558:+|3.6097156077795582|0.158509141388744|4.51|151.0|10|3|sense MSMS UPN47_class_I_Rep_2 3 562.787353515625 2 562.787118 1123.55968 NaN NaN NaN NaN NaN NaN NaN 48.08 1 51.429 50.929 51.929 3.3492 0 0 0 0.40364 1 10363 10363 5.7604 0 1 + 56927 24873 35812 35830 65411 65411 0.0028462503958053276 YLPATHSL 8 Unmodified _YLPATHSL_ 0 0 0 REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|86|1|anti-sense REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|86|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 451.2425842285156 2 451.242535 900.470518 -0.54669 -0.00024669 0.019292 8.7053E-06 -0.5274 -0.00023798 451.24249865937685 40 0.62627 43.371 43.157 43.783 3.3712 56 42 2 0 0 0 0.82752 2 7997 7997;8041 2.5775 0 1 69515 + 56928 30719 35813 35831 65412;65413 65412 0.016301133517231392 YLPATHSLLL 10 Unmodified _YLPATHSLLL_ 0 0 0 REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|86|1|anti-sense REV__L1PREC2_dup4533|chrX:74048882-74051399:+|1.1570246634870174|0.1166464643437681|3.31|151.0|86|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 564.3272094726562 2 564.326599 1126.63865 0.42744 0.00024122 -0.43268 -0.00024417 -0.0052341 -2.9537E-06 564.3261662134082 77.47 0.22217 77.47 77.361 77.583 0 27 20 2 0 0 0 0.47413 1 18101 18101 13.906 2.2658 1 127760 + 56929 30719 35814 35832 65414 65414 0.08039175545536636 YLPEKLAH 8 Unmodified _YLPEKLAH_ 0 0 0 L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|98|1|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|98|1|anti-sense L1ME1_dup28213|chr18:13534678-13537246:-|2.279434287465832|0.2507007516328469|3.18|151.0|98|1|anti-sense MSMS UPN47_class_I_Rep_3 4 485.81134033203125 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 40.01 1 43.247 42.747 43.747 3.2372 0 0 0 0.40604 1 7969 7969 2.5775 0 1 56930 12363 35815 35833 65415 65415 0.0423837527713431 YLPFFFFGP 9 Unmodified _YLPFFFFGP_ 0 0 0 ENSG00000010282|ENST00000441594|HHATL ENSG00000010282|ENST00000441594|HHATL ENSG00000010282|ENST00000441594|HHATL MULTI-MSMS UPN48_class_I_Rep_2 6 567.7860717773438 2 567.786579 1133.5586 0.50696 0.00028785 -0.92029 -0.00052253 -0.41333 -0.00023468 567.7858584770863 66.659 0.60711 70.145 69.876 70.483 3.4866 51 40 2 0 0 0 0.37662 1 15343 15343 9.3474 1.4373 1 112600 56931 753 35816 35834 65416 65416 -0.0028326605768143054 YLPGPVKA 8 Unmodified _YLPGPVKA_ 0 0 0 ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4 ENST00000415574.6_1_2:132250659-132263934:+|nuORF ENST00000415574.6_1_2:132250659-132263934:+|nuORF MSMS UPN47_class_I_Rep_2 3 422.7475280761719 2 422.749996 843.485439 NaN NaN NaN NaN NaN NaN NaN 13.225 1 16.613 16.113 17.113 3.388 0 0 0 0.40738 1 274 274 0.79363 0 1 56932 2982 35817 35835 65417 65417 0.05743605219697656 YLPGYFFHI 9 Unmodified _YLPGYFFHI_ 0 0 0 L1MC4_dup17445|chr12:26651112-26652409:-|2.3669249958663348|0.0784467317958437|4.92|151.0|64|1|anti-sense L1MC4_dup17445|chr12:26651112-26652409:-|2.3669249958663348|0.0784467317958437|4.92|151.0|64|1|anti-sense L1MC4_dup17445|chr12:26651112-26652409:-|2.3669249958663348|0.0784467317958437|4.92|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_3 7 578.7958374023438 2 578.794935 1155.57532 NaN NaN NaN NaN NaN NaN NaN 63.518 1 67.027 66.527 67.527 3.5091 0 0 0 0.381 1 14207 14207 5.2307 0.47466 1 56933 11421 35818 35836 65418 65418 0.0037523482828873966 YLPHLFPSF 9 Unmodified _YLPHLFPSF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS UPN48_class_I_Rep_2 6 560.7948608398438 2 560.794935 1119.57532 NaN NaN NaN NaN NaN NaN NaN 77.021 1 80.632 80.132 81.132 3.6116 0 0 0 0.28335 1 18208 18208 11.64 0 1 56934 5238 35819 35837 65419 65419 0.020312348282914172 YLPIGNLR 8 Unmodified _YLPIGNLR_ 0 0 0 REV__L1MA9_dup14645|chr17:30804241-30804719:-|1.6006793775795178|0.0377310742662191|5.41|151.0|21|1|anti-sense REV__L1MA9_dup14645|chr17:30804241-30804719:-|1.6006793775795178|0.0377310742662191|5.41|151.0|21|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 473.2798156738281 2 473.279452 944.544351 0.18085 8.5591E-05 -0.32237 -0.00015257 -0.14152 -6.6981E-05 473.27923664100626 50.161 0.53053 53.856 53.639 54.169 3.6946 53 35 2 0 0 0 0.82752 1 10191 10191 9.3474 0 1 155660 + 56935 25618 35820 35838 65420 65420 0.06986081514025955 YLPIIHLWL 9 Unmodified _YLPIIHLWL_ 0 0 0 REV__L1MB7_dup1891|chr2:23713408-23713916:-|1.0143964267998575|0.1050751642420769|3.27|151.0|35|3|anti-sense REV__L1MB7_dup1891|chr2:23713408-23713916:-|1.0143964267998575|0.1050751642420769|3.27|151.0|35|3|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3475952148438 2 584.349877 1166.6852 NaN NaN NaN NaN NaN NaN NaN 35.691 1 35.691 35.191 36.191 0 0 0 0 0.40038 1 6528 6528 0.6015 0 1 + 56936 26189 35821 35839 65421 65421 0.10852660167461181 YLPKVIHR 8 Unmodified _YLPKVIHR_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MSMS UPN47_class_I_Rep_3 4 513.314453125 2 513.316369 1024.61818 NaN NaN NaN NaN NaN NaN NaN 40.106 1 43.343 42.843 43.843 3.2372 0 0 0 0.40738 1 7998 7998 0.79363 0 1 + 56937 17625 35822 35840 65422 65422 0.10686049676360199 YLPLPYLII 9 Unmodified _YLPLPYLII_ 0 0 0 HAL1_dup4045|chr3:179174559-179175722:-|2.3425255534636618|0.0584220944643551|5.33|151.0|70|3|anti-sense HAL1_dup4045|chr3:179174559-179175722:-|2.3425255534636618|0.0584220944643551|5.33|151.0|70|3|anti-sense HAL1_dup4045|chr3:179174559-179175722:-|2.3425255534636618|0.0584220944643551|5.33|151.0|70|3|anti-sense MSMS UPN46_class_I_Rep_3 1 552.8370361328125 2 552.838811 1103.66307 NaN NaN NaN NaN NaN NaN NaN 67.995 1 67.995 67.495 68.495 0 0 0 0 0.381 1 15502 15502 5.2307 0 1 56938 7882 35823 35841 65423 65423 0.11538435699048932 YLPLRAEKL 9 Unmodified _YLPLRAEKL_ 0 0 0 REV__L1PA5_dup9006|chr12:102137525-102143613:-|1.5553818194063278|0.0503868579433774|4.95|150.0|120|3|sense REV__L1PA5_dup9006|chr12:102137525-102143613:-|1.5553818194063278|0.0503868579433774|4.95|150.0|120|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 552.2793579101562 2 551.834591 1101.65463 0.35196 0.00019422 -1.4498 -0.00080006 -1.0979 -0.00060583 551.8347669570734 58.886 0.31774 62.41 62.31 62.628 3.5231 25 22 2 0 0 0 0.10341 1 12789 12789 16.942 4.4107 1 65590 + 56939 29812 35824 35842 65424 65424 0.10786881782405544 YLPLRAVA 8 Unmodified _YLPLRAVA_ 0 0 0 REV__L1PA7_dup1601|chr2:171761218-171761993:-|2.154570602412656|0.116192294263691|4.21|151.0|7|1|sense REV__L1PA7_dup1601|chr2:171761218-171761993:-|2.154570602412656|0.116192294263691|4.21|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.776123046875 2 451.776545 901.538538 -0.34935 -0.00015783 -0.27724 -0.00012525 -0.62659 -0.00028308 451.77628559338655 38.829 0.73652 42.494 42.192 42.929 3.6652 64 47 2 0 0 0 0.82752 3 7462 7462;7548;7594 14.582 0 1 76378 + 56940 30033 35825 35843 65425;65426;65427 65425 0.08382983002366018 YLPLRAVA 8 Unmodified _YLPLRAVA_ 0 0 0 REV__L1PA7_dup1601|chr2:171761218-171761993:-|2.154570602412656|0.116192294263691|4.21|151.0|7|1|sense REV__L1PA7_dup1601|chr2:171761218-171761993:-|2.154570602412656|0.116192294263691|4.21|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 451.7757873535156 2 451.776545 901.538538 -0.54057 -0.00024422 -0.15492 -6.9989E-05 -0.69549 -0.00031421 451.7763536103472 39.339 0.81983 42.718 42.359 43.179 3.3785 59 46 2 0 0 0 0.82752 2 7706 7706;7765 14.582 0 1 77578 + 56941 30033 35825 35843 65428;65429 65428 0.08382983002366018 YLPLVPSMSH 10 Unmodified _YLPLVPSMSH_ 0 0 0 REV__L1MA2_dup858|chr2:148220612-148224334:-|1.1669281258896425|0.0137875092089152|6.4|150.0|44|2|sense REV__L1MA2_dup858|chr2:148220612-148224334:-|1.1669281258896425|0.0137875092089152|6.4|150.0|44|2|sense MSMS UPN46_class_I_Rep_3 1 572.297119140625 2 572.296985 1142.57942 NaN NaN NaN NaN NaN NaN NaN 43.64 1 43.64 43.14 44.14 0 0 0 0 0.53105 1 8729 8729 1.8442 1.1539 1 + 56942 24947 35826 35844 65430 65430 0.013829562596811229 YLPPHNLSY 9 Unmodified _YLPPHNLSY_ 0 0 0 MER21C_dup3274|chr10:21622693-21623539:-|2.0031329817439776|0.004427415464672|8.82|150.0|29|3|sense MER21C_dup3274|chr10:21622693-21623539:-|2.0031329817439776|0.004427415464672|8.82|150.0|29|3|sense MER21C_dup3274|chr10:21622693-21623539:-|2.0031329817439776|0.004427415464672|8.82|150.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.7816162109375 2 552.279649 1102.54475 0.57922 0.00031989 -0.28713 -0.00015858 0.29209 0.00016131 552.2796858287854 58.84 0.74583 62.339 62.02 62.766 3.4987 82 45 2 0 0 0 0.23311 1 12953 12953 18.135 3.5533 1 217710 56943 15896 35827 35845 65431 65431 -0.0024254355676021078 YLPRRQRK 8 Unmodified _YLPRRQRK_ 0 0 0 REV__L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|157|3|sense REV__L1PA5_dup6379|chr9:100253416-100259550:-|2.111387815023967|0.0514839586433939|5.36|151.0|157|3|sense MSMS UPN48_class_I_Rep_3 7 558.8403930664062 2 558.841074 1115.66759 NaN NaN NaN NaN NaN NaN NaN 90.83 1 94.677 94.177 95.177 3.847 0 0 0 0.40746 1 21541 21541 0.69038 0 1 + 56944 28827 35828 35846 65432 65432 0.11438757685186829 YLPTFLYTM 9 Unmodified _YLPTFLYTM_ 0 0 0 REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|191|1|anti-sense REV__L1PA17_dup1808|chr6:110462247-110466911:+|1.2342509023832755|0.0084183843340239|7.2|147.0|191|1|anti-sense MSMS UPN48_class_I_Rep_2 6 574.7862548828125 2 574.788461 1147.56237 NaN NaN NaN NaN NaN NaN NaN 73.06 1 76.625 76.125 77.125 3.5645 0 0 0 0.36505 1 17138 17138 7.2892 1.0834 1 + 56945 29450 35829 35847 65433 65433 -0.005509643461437008 YLPTKKDE 8 Unmodified _YLPTKKDE_ 0 0 0 REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|4|1|sense REV__L1ME3D_dup3797|chr18:13042493-13043354:-|1.0724997177538242|0.0569278497993226|4.24|149.0|4|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 497.2668151855469 2 497.266207 992.517862 0.20271 0.0001008 0.88661 0.00044088 1.0893 0.00054168 497.2667201206715 40.547 1.0367 44.052 43.702 44.739 3.5048 145 96 2 0 0 0 0.82752 2 7396 7396;7437 4.756 0.42677 1 186820 + 56946 28145 35830 35848 65434;65435 65434 0.021303478320419345 YLPTLIQLQK 10 Unmodified _YLPTLIQLQK_ 0 0 0 HAL1_dup6627|chr4:139880822-139881705:+|3.3558338121024747|0.0234986049342898|7.16|151.0|16|2|sense HAL1_dup6627|chr4:139880822-139881705:+|3.3558338121024747|0.0234986049342898|7.16|151.0|16|2|sense HAL1_dup6627|chr4:139880822-139881705:+|3.3558338121024747|0.0234986049342898|7.16|151.0|16|2|sense MSMS UPN47_class_I_Rep_1 2 406.2490234375 3 406.24818 1215.72271 NaN NaN NaN NaN NaN NaN NaN 111.68 1 115.26 114.76 115.76 3.572 0 0 0 0.53105 1 27558 27558 0.69767 0 1 56947 7905 35831 35849 65436 65436 0.12347706642412959 YLPVRYLG 8 Unmodified _YLPVRYLG_ 0 0 0 HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|59|3|anti-sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|59|3|anti-sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|59|3|anti-sense MSMS UPN46_class_I_Rep_3 1 490.7819519042969 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.13 1 112.13 111.63 112.63 0 0 0 0 0.40581 1 27676 27676 2.8892 0 1 56948 7940 35832 35850 65437 65437 0.05850965656804874 YLPWVEIY 8 Unmodified _YLPWVEIY_ 0 0 0 REV__L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|280|2|anti-sense REV__L1PB1_dup1710|chr2:201312695-201318736:+|1.1526060223077883|0.0124417064227408|6.53|151.0|280|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.7817993164062 2 541.781493 1081.54843 0.44709 0.00024223 0.32667 0.00017698 0.77376 0.00041921 541.7814982176875 47.7 0.6991 51.334 51.101 51.8 3.6339 75 50 2 0 0 0 0.82752 2 9383 9383;9466 5.2307 0 1 201610 + 56949 30361 35833 35851 65438;65439 65438 0.01092126217099576 YLQFEKQNY 9 Unmodified _YLQFEKQNY_ 0 0 0 REV__ENSG00000144820|ENST00000273352|ADGRG7 REV__ENSG00000144820|ENST00000273352|ADGRG7 MSMS UPN48_class_I_Rep_1 5 616.8019409179688 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 58.322 1 61.809 61.309 62.309 3.487 0 0 0 0.38784 1 12715 12715 3.5965 0 1 + 56950 19495 35834 35852 65440 65440 -0.019191932191688466 YLQFEKQNY 9 Unmodified _YLQFEKQNY_ 0 0 0 REV__ENSG00000144820|ENST00000273352|ADGRG7 REV__ENSG00000144820|ENST00000273352|ADGRG7 MSMS UPN48_class_I_Rep_3 7 616.8016357421875 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 58.202 1 61.734 61.234 62.234 3.5317 0 0 0 0.37476 1 12591 12591 6.7232 0 1 + 56951 19495 35834 35852 65441 65441 -0.019191932191688466 YLQHKVTQL 9 Unmodified _YLQHKVTQL_ 0 0 0 REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF MSMS UPN48_class_I_Rep_2 6 565.3236083984375 2 565.321848 1128.62914 NaN NaN NaN NaN NaN NaN NaN 71.339 1 74.89 74.39 75.39 3.5505 0 0 0 0.32573 1 16638 16638 9.3831 0 1 + 56952 22014 35835 35853 65442 65442 0.0699740725999618 YLQHKVTQL 9 Unmodified _YLQHKVTQL_ 0 0 0 REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF MSMS UPN48_class_I_Rep_2 6 565.32470703125 2 565.321848 1128.62914 NaN NaN NaN NaN NaN NaN NaN 71.475 1 75.025 74.525 75.525 3.5505 0 0 0 0.37476 1 16679 16679 6.7232 0 1 + 56953 22014 35835 35853 65443 65443 0.0699740725999618 YLQHKVTQL 9 Unmodified _YLQHKVTQL_ 0 0 0 REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 565.3250122070312 2 565.321848 1128.62914 0.49666 0.00028077 3.313 0.0018729 3.8097 0.0021537 565.3238143202193 71.233 0.093567 74.751 74.703 74.797 3.5185 12 8 2 0 0 0 0.37599 1 16533 16533 9.3831 0 1 44948 + 56954 22014 35835 35853 65444 65444 0.0699740725999618 YLQIAINQ 8 Unmodified _YLQIAINQ_ 0 0 0 Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense Tigger1_dup616|chr1:169845093-169847380:-|2.0736760511567587|0.328414267720813|2.66|151.0|149|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7685852050781 2 481.768917 961.523281 -0.20624 -9.9359E-05 -0.12142 -5.8497E-05 -0.32766 -0.00015786 481.7688681415983 37.657 0.44086 41.045 40.854 41.295 3.3879 52 35 2 0 0 0 0.82752 1 7253 7253 0.69038 0 1 57483 56955 33148 35836 35854 65445 65445 0.040980714145121055 YLQKFSPKY 9 Unmodified _YLQKFSPKY_ 0 0 0 L1MA4_dup9464|chr19:9666380-9667598:+|2.854724943348764|0.0782477875060203|5.19|151.0|7|1|sense L1MA4_dup9464|chr19:9666380-9667598:+|2.854724943348764|0.0782477875060203|5.19|151.0|7|1|sense L1MA4_dup9464|chr19:9666380-9667598:+|2.854724943348764|0.0782477875060203|5.19|151.0|7|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.3187255859375 2 587.318774 1172.623 0.53299 0.00031303 0.24067 0.00014135 0.77365 0.00045438 587.3188653228009 52.785 0.84722 56.395 56.074 56.922 3.6098 98 53 2 0 0 0 0.48643 1 10915 10915 2.0598 0 1 314470 56956 9747 35837 35855 65446 65446 0.04358889028480917 YLQKQQVF 8 Unmodified _YLQKQQVF_ 0 0 0 REV__L1PBa_dup561|chr4:67465011-67466073:+|1.0174605939286612|0.3685851973585624|1.46|150.0|3|1|sense REV__L1PBa_dup561|chr4:67465011-67466073:+|1.0174605939286612|0.3685851973585624|1.46|150.0|3|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.2911376953125 2 527.290017 1052.56548 0.42726 0.00022529 -0.11167 -5.8885E-05 0.31559 0.00016641 527.2897505779715 63.898 0.56149 67.355 67.092 67.654 3.4578 47 40 2 0 0 0 0.82752 1 14408 14408 5.2307 0 1 97746 + 56957 30653 35838 35856 65447 65447 0.04130046822888289 YLQKTEEDG 9 Unmodified _YLQKTEEDG_ 0 0 0 L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|16|1|sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|16|1|sense L1MB4_dup3741|chr8:28170723-28174433:-|2.04087762969064|0.0598053621818374|5.09|150.0|16|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 542.7567138671875 2 541.753661 1081.49277 -0.033941 -1.8388E-05 0.33434 0.00018113 0.3004 0.00016274 541.7537624080588 30.322 1.1412 34.067 33.716 34.857 3.7449 227 89 4 0 0 0 0.49026 1 5136 5136 1.6526 0.45928 1 659670 56958 10510 35839 35857 65448 65448 -0.044717517611843505 YLQMLFRF 8 Unmodified _YLQMLFRF_ 0 0 0 L1MC4a_dup6145|chr10:21980256-21980784:+|1.0037931111017175|0.007053097766984|7.15|151.0|35|3|anti-sense L1MC4a_dup6145|chr10:21980256-21980784:+|1.0037931111017175|0.007053097766984|7.15|151.0|35|3|anti-sense L1MC4a_dup6145|chr10:21980256-21980784:+|1.0037931111017175|0.007053097766984|7.15|151.0|35|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 559.31591796875 2 559.296788 1116.57902 0.51799 0.00028971 -3.6944 -0.0020662 -3.1764 -0.0017765 559.2957621403119 58.991 0.08654 62.272 62.24 62.327 3.2818 7 5 2 0 0 0 0.72333 1 13708 13708 2.3027 0 1 37338 56959 11596 35840 35858 65449 65449 0.025395813304839976 YLQNHFVGL 9 Unmodified _YLQNHFVGL_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-SECPEP UPN47_class_I_Rep_3 4 545.8289184570312 2 545.787641 1089.56073 0.44265 0.00024159 0.0038314 2.0911E-06 0.44648 0.00024368 545.7875667106022 54.403 0.10361 57.589 57.507 57.611 3.1856 7 5 2 0 0 0 0.12281 1 12339 12339 4.3292 0.38484 1 32938 56960 2025 35841 35859 65450 65450 0.01953162680160858 YLQREAHQN 9 Unmodified _YLQREAHQN_ 0 0 0 L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|69|2|sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|69|2|sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|69|2|sense MSMS UPN47_class_I_Rep_2 3 579.7869873046875 2 579.786161 1157.55777 NaN NaN NaN NaN NaN NaN NaN 42.618 1 45.979 45.479 46.479 3.3611 0 0 0 0.31276 1 8709 8709 10.074 0.72649 1 56961 14955 35842 35860 65451 65451 -0.014707124446658781 YLQRLFSIK 9 Unmodified _YLQRLFSIK_ 0 0 0 REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF MSMS UPN46_class_I_Rep_3 1 584.3482055664062 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 39.373 1 39.373 38.873 39.873 0 0 0 0 0.39518 1 7561 7561 1.8442 0 1 + 56962 23034 35843 35861 65452 65452 0.10450570673742732 YLQRTISYY 9 Unmodified _YLQRTISYY_ 0 0 0 REV__L1MC1_dup5135|chr6:41989480-41989948:+|1.1853063962241774|0.0082141779362747|7.17|151.0|9|2|sense REV__L1MC1_dup5135|chr6:41989480-41989948:+|1.1853063962241774|0.0082141779362747|7.17|151.0|9|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 603.8119506835938 2 603.811313 1205.60807 0.37971 0.00022928 0.13235 7.9917E-05 0.51207 0.00030919 603.811271036221 57.099 1.1835 60.267 59.843 61.027 3.1681 236 103 4 0 0 0 0.26948 1 13379 13379 15.847 0 1 1304800 + 56963 26575 35844 35862 65453 65453 0.01349397160515764 YLQVKLPLNSA 11 Unmodified _YLQVKLPLNSA_ 0 0 0 ENST00000399586.2_1_X:74960734-74966719:-|nuORF ENST00000399586.2_1_X:74960734-74966719:-|nuORF ENST00000399586.2_1_X:74960734-74966719:-|nuORF MSMS UPN46_class_I_Rep_3 1 623.3638305664062 2 623.363713 1244.71287 NaN NaN NaN NaN NaN NaN NaN 29.002 1 29.002 28.502 29.502 0 0 0 0 0.38417 1 4534 4534 0 0 1 56964 6590 35845 35863 65454 65454 0.10030518637063324 YLQYLGQLI 9 Unmodified _YLQYLGQLI_ 0 0 0 REV__HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|341|3|anti-sense REV__HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|341|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 555.8126831054688 2 555.813325 1109.6121 0.55206 0.00030684 -0.19557 -0.0001087 0.35649 0.00019814 555.8132887149129 61.715 0.53389 65.188 64.954 65.488 3.4738 74 41 2 0 0 0 0.18929 1 13781 13781 21.747 0.20967 1 203180 + 56965 23837 35846 35864 65455 65455 0.061674866541807205 YLQYLGQLI 9 Unmodified _YLQYLGQLI_ 0 0 0 REV__HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|341|3|anti-sense REV__HERVK9-int_dup275|chr6:110500001-110505558:+|1.8816611067457043|0.0274206964199755|6.1|150.0|341|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 556.3150024414062 2 555.813325 1109.6121 0.40431 0.00022472 0.067391 3.7457E-05 0.4717 0.00026218 555.8134499658147 61.503 0.49511 65.016 64.869 65.364 3.5128 68 42 2 0 0 0 0.18929 1 13664 13664 21.747 0 1 178740 + 56966 23837 35846 35864 65456 65456 0.061674866541807205 YLRCYIGL 8 Unmodified _YLRCYIGL_ 0 0 0 REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|335|2|anti-sense REV__L1MA3_dup6039|chr10:52584678-52591031:-|4.820690763506048|0.0132641974504485|8.51|146.0|335|2|anti-sense MSMS UPN47_class_I_Rep_3 4 500.7665100097656 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 110.99 1 114.52 114.02 115.02 3.529 0 0 0 0.40738 1 27229 27229 0.79363 0 1 + 56967 25057 35847 35865 65457 65457 0.021393194050460806 YLREFTLL 8 Unmodified _YLREFTLL_ 0 0 0 REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|118|1|anti-sense REV__L1MD1_dup1862|chr4:150946227-150949471:+|1.097505397668734|0.0156137532685982|6.14|151.0|118|1|anti-sense MSMS UPN47_class_I_Rep_2 3 527.800537109375 2 527.800217 1053.58588 NaN NaN NaN NaN NaN NaN NaN 111.29 1 114.81 114.31 115.31 3.5226 0 0 0 0.40604 1 27084 27084 2.5775 0 1 + 56968 27303 35848 35866 65458 65458 0.06123217482718246 YLRELLTTM 9 Oxidation (M) _YLRELLTTM(Oxidation (M))_ YLRELLTTM(1) YLRELLTTM(68) 0 0 1 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MULTI-MSMS UPN47_class_I_Rep_1 2 578.3077392578125 2 578.307549 1154.60055 0.24375 0.00014096 -0.0025326 -1.4646E-06 0.24122 0.0001395 578.3074437455804 50.651 0.73462 54.279 53.959 54.694 3.6285 56 33 2 0 0 0 0.013215 2 11124 11124;11131 67.838 40.209 1 239440 56969 1580 35849 35867 65459;65460 65459 49 0.029429215685240706 YLRELLTTM 9 Oxidation (M) _YLRELLTTM(Oxidation (M))_ YLRELLTTM(1) YLRELLTTM(42) 0 0 1 ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B ENSG00000101608|ENST00000217652|MYL12A ENSG00000101608|ENST00000217652|MYL12A MULTI-MSMS UPN47_class_I_Rep_3 4 578.3076782226562 2 578.307549 1154.60055 0.54217 0.00031354 -0.29183 -0.00016877 0.25034 0.00014477 578.3073223804258 51.159 0.86983 54.375 54.02 54.89 3.2163 86 42 3 0 0 0 0.066364 1 11333 11333 41.956 25.806 1 228120 56970 1580 35849 35867 65461 65461 49 0.029429215685240706 YLRFCLKVCI 10 Unmodified _YLRFCLKVCI_ 0 0 0 L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|52|3|anti-sense L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|52|3|anti-sense L1MEf_dup4645|chr6:156033304-156034054:-|1.346455529872664|0.0058032901062986|7.86|146.0|52|3|anti-sense MSMS UPN47_class_I_Rep_3 4 629.3466796875 2 629.345954 1256.67736 NaN NaN NaN NaN NaN NaN NaN 59.838 1 63.004 62.504 63.504 3.1651 0 0 0 0.53105 1 14008 14008 1.4819 0 1 56971 13274 35850 35868 65462 65462 0.059284415840465954 YLRGHGIP 8 Unmodified _YLRGHGIP_ 0 0 0 nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK nc|ENSG00000107815|Q96RR1-3|TWNK nc|ENSG00000107815|Q96RR1-3|TWNK MSMS UPN46_class_I_Rep_3 1 456.75787353515625 2 456.756144 911.497735 NaN NaN NaN NaN NaN NaN NaN 80.577 1 80.577 80.077 81.077 0 0 0 0 0.40738 1 18987 18987 0.79363 0 1 56972 1833 35851 35869 65463 65463 0.03844641682758265 YLRGQRLG 8 Unmodified _YLRGQRLG_ 0 0 0 REV__ENSG00000162873|ENST00000367155|KLHDC8A REV__ENSG00000162873|ENST00000367155|KLHDC8A MULTI-MSMS UPN47_class_I_Rep_3 4 481.77947998046875 2 481.780151 961.545748 -0.64215 -0.00030937 0.063048 3.0375E-05 -0.5791 -0.000279 481.78005874706395 22.293 0.77921 25.642 25.31 26.09 3.3496 93 70 2 0 0 0 0.82752 1 2633 2633 2.5775 0 1 67441 + 56973 19947 35852 35870 65464 65464 0.06343715602804423 YLRIPVVTV 9 Unmodified _YLRIPVVTV_ 0 0 0 REV__Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|1|1|sense REV__Tigger3b_dup4328|chr10:124925829-124926951:-|1.7515319431449683|0.2670565766964799|2.71|151.0|1|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 530.33203125 2 530.331685 1058.64882 0.53905 0.00028588 -0.26378 -0.00013989 0.27527 0.00014599 530.3315480471604 66.62 0.39 70.128 69.996 70.386 3.5077 34 23 2 0 0 0 0.12477 1 15137 15137 1.6526 0.17072 1 141760 + 56974 32750 35853 35871 65465 65465 0.12183783270734239 YLRIYDRK 8 Unmodified _YLRIYDRK_ 0 0 0 REV__ENSG00000016082|ENST00000230658|ISL1 REV__ENSG00000016082|ENST00000230658|ISL1 MSMS UPN48_class_I_Rep_3 7 563.8220825195312 2 563.822015 1125.62948 NaN NaN NaN NaN NaN NaN NaN 102.55 1 106.33 105.83 106.83 3.776 0 0 0 0.40643 1 24232 24232 2.0598 0 1 + 56975 17596 35854 35872 65466 65466 0.07168826979818732 YLRIYLIA 8 Unmodified _YLRIYLIA_ 0 0 0 ENSG00000274286|ENST00000620793|ADRA2B ENSG00000274286|ENST00000620793|ADRA2B ENSG00000274286|ENST00000620793|ADRA2B MSMS UPN47_class_I_Rep_2 3 512.8125 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 39.725 1 43.103 42.603 43.603 3.3785 0 0 0 0.40364 1 7834 7834 5.7604 0 1 56976 5819 35855 35873 65467 65467 0.100841117249729 YLRIYLIA 8 Unmodified _YLRIYLIA_ 0 0 0 ENSG00000274286|ENST00000620793|ADRA2B ENSG00000274286|ENST00000620793|ADRA2B ENSG00000274286|ENST00000620793|ADRA2B MSMS UPN47_class_I_Rep_2 3 512.8126831054688 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 39.868 1 43.24 42.74 43.74 3.3712 0 0 0 0.40604 1 7878 7878 2.5775 0 1 56977 5819 35855 35873 65468 65468 0.100841117249729 YLRIYLIA 8 Unmodified _YLRIYLIA_ 0 0 0 ENSG00000274286|ENST00000620793|ADRA2B ENSG00000274286|ENST00000620793|ADRA2B ENSG00000274286|ENST00000620793|ADRA2B MSMS UPN47_class_I_Rep_3 4 512.8125610351562 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 40.263 1 43.501 43.001 44.001 3.2372 0 0 0 0.40604 1 8046 8046 2.5775 0 1 56978 5819 35855 35873 65469 65469 0.100841117249729 YLRLARSTL 9 Unmodified _YLRLARSTL_ 0 0 0 nc|ENSG00000078549|P41586-5|ADCYAP1R1;nc|ENSG00000078549|P41586-3|ADCYAP1R1;ENSG00000078549|ENST00000304166|ADCYAP1R1 nc|ENSG00000078549|P41586-5|ADCYAP1R1 nc|ENSG00000078549|P41586-5|ADCYAP1R1 MULTI-MSMS UPN48_class_I_Rep_2 6 546.8297119140625 2 546.82984 1091.64513 0.3992 0.00021829 -0.21351 -0.00011675 0.18569 0.00010154 546.8296294839336 45.69 0.75238 49.448 49.111 49.863 3.7579 89 56 2 0 0 0 0.41259 2 8954 8951;8954 7.2892 0 1 148450 56979 1185 35856 35874 65470;65471 65471 0.10297113496881138 YLRLVHVW 8 Unmodified _YLRLVHVW_ 0 0 0 ENSG00000106648|ENST00000392800|GALNTL5 ENSG00000106648|ENST00000392800|GALNTL5 ENSG00000106648|ENST00000392800|GALNTL5 MSMS UPN46_class_I_Rep_3 1 543.3146362304688 2 543.316369 1084.61818 NaN NaN NaN NaN NaN NaN NaN 87.053 1 87.053 86.553 87.553 0 0 0 0 0.40738 1 20839 20839 0.79363 0 1 56980 1798 35857 35875 65472 65472 0.07926049676370894 YLRRKLFG 8 Unmodified _YLRRKLFG_ 0 0 0 L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|116|2|anti-sense L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|116|2|anti-sense L1M4_dup17530|chr16:55517044-55519097:+|6.418023218646195|0.0535067362999739|6.91|150.0|116|2|anti-sense MSMS UPN46_class_I_Rep_3 1 526.8631591796875 2 526.821818 1051.62908 NaN NaN NaN NaN NaN NaN NaN 36.121 1 36.121 35.621 36.621 0 0 0 0 0.40604 1 6659 6659 2.5775 0 1 56981 8865 35858 35876 65473 65473 0.10533452050663072 YLRRNHRK 8 Unmodified _YLRRNHRK_ 0 0 0 REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|3|1|sense REV__L1PA4_dup10574|chr15:35354825-35357424:-|1.0264101669115455|0.0316471897209228|5.02|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 571.8369140625 2 571.836323 1141.65809 NaN NaN NaN NaN NaN NaN NaN 29.19 1 32.821 32.321 33.321 3.6316 0 0 0 0.40746 1 4114 4114 0.69038 0 1 + 56982 29504 35859 35877 65474 65474 0.09292989399637008 YLRRNKLRF 9 Unmodified _YLRRNKLRF_ 0 0 0 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 MSMS UPN48_class_I_Rep_2 6 422.592529296875 3 422.591163 1264.75166 NaN NaN NaN NaN NaN NaN NaN 49.583 1 53.278 52.778 53.778 3.6946 0 0 0 0.38073 1 10034 10034 5.2969 0.76802 1 56983 1022 35860 35878 65475 65475 0.12987288782073847 YLRRNKLRF 9 Unmodified _YLRRNKLRF_ 0 0 0 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 ENSG00000066557|ENST00000370952|LRRC40 MSMS UPN48_class_I_Rep_2 6 422.5924377441406 3 422.591163 1264.75166 NaN NaN NaN NaN NaN NaN NaN 49.72 1 53.414 52.914 53.914 3.6946 0 0 0 0.39145 1 10076 10076 2.7352 0.23671 1 56984 1022 35860 35878 65476 65476 0.12987288782073847 YLRSPEILI 9 Unmodified _YLRSPEILI_ 0 0 0 L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.3268432617188 2 552.326599 1102.63865 0.54378 0.00030034 -0.026371 -1.4566E-05 0.51741 0.00028578 552.326500297324 70.272 0.9862 73.732 73.244 74.23 3.4598 153 87 3 0 0 0 0.090251 1 16353 16353 36.127 4.8587 1 1797100 56985 10409 35861 35879 65477 65477 0.09143175545546 YLRSPEILI 9 Unmodified _YLRSPEILI_ 0 0 0 L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 552.3268432617188 2 552.326599 1102.63865 0.4872 0.00026909 0.061007 3.3696E-05 0.54821 0.00030279 552.3265313074568 69.983 1.0726 73.504 73.147 74.22 3.5216 263 99 4 0 0 0 0.1249 1 16274 16274 29.082 1.4528 1 1776600 56986 10409 35861 35879 65478 65478 0.09143175545546 YLRSPEILI 9 Unmodified _YLRSPEILI_ 0 0 0 L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense L1MB3_dup3033|chr3:44380425-44382275:+|2.3151600667062056|0.0977560194307935|4.57|151.0|67|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.3267211914062 2 552.326599 1102.63865 0.4479 0.00024738 0.04614 2.5484E-05 0.49404 0.00027287 552.3265425024151 70.072 0.82777 73.585 73.072 73.9 3.5128 225 68 4 0 0 0 0.061943 2 16172 16133;16172 43.858 2.8134 1 1922400 56987 10409 35861 35879 65479;65480 65480 0.09143175545546 YLRSSLPLY 9 Unmodified _YLRSSLPLY_ 0 0 0 L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|50|2|anti-sense L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|50|2|anti-sense L1MC4_dup3|chr1:84540966-84541950:-|2.353528289483587|0.0752754405917953|4.97|151.0|50|2|anti-sense MSMS UPN46_class_I_Rep_3 1 556.7852172851562 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 68.599 1 68.599 68.099 69.099 0 0 0 0 0.26661 1 15672 15672 12.532 0 1 56988 11485 35862 35880 65481 65481 0.0564660251143323 YLRSVFAL 8 Unmodified _YLRSVFAL_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 484.8160400390625 2 484.781828 967.549102 0.15022 7.2822E-05 0.25997 0.00012603 0.41018 0.00019885 484.7818182258644 61.625 0.84256 64.993 64.666 65.509 3.3681 103 62 2 0 0 0 0.72333 1 14476 14476 30.637 5.2372 1 169550 56989 1325 35863 35881 65482 65482 0.06402965656809556 YLRTFGSL 8 Unmodified _YLRTFGSL_ 0 0 0 ENST00000465878.6_2_16:57792155-57792449:-|nuORF ENST00000465878.6_2_16:57792155-57792449:-|nuORF ENST00000465878.6_2_16:57792155-57792449:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 478.7643127441406 2 478.763635 955.512717 0.19525 9.3478E-05 0.27423 0.00013129 0.46948 0.00022477 478.7637657776094 52.771 0.30866 52.771 52.646 52.955 0 42 32 2 0 0 0 0.82752 1 11353 11353 13.508 0 1 128910 56990 6896 35864 35882 65483 65483 0.03318088760113369 YLRTHKEVEW 10 Unmodified _YLRTHKEVEW_ 0 0 0 ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1 ENST00000451484.6_1_1:151694382-151701309:+|nuORF ENST00000451484.6_1_1:151694382-151701309:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 454.5726623535156 3 454.238455 1359.69353 0.01666 7.5674E-06 -0.16776 -7.6205E-05 -0.1511 -6.8637E-05 454.2383031352833 46.802 0.91522 50.321 49.93 50.845 3.5192 140 57 3 0 0 0 0.55335 1 9247 9247 5.0475 1.4548 1 338070 56991 4834 35865 35883 65484 65484 0.028075623461518262 YLRVLLHIN 9 Unmodified _YLRVLLHIN_ 0 0 0 REV__Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|52|1|anti-sense REV__Tigger1_dup5352|chr6:163483034-163484199:-|1.0803146416393774|0.0312182328782898|5.11|151.0|52|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 570.8472290039062 2 570.848033 1139.68151 0.084943 4.8489E-05 0.14771 8.4323E-05 0.23266 0.00013281 570.8478642715181 24.09 0.10427 24.09 24.059 24.163 0 14 9 2 0 0 0 0.50582 1 3126 3126 0 0 1 51953 + 56992 32467 35866 35884 65485 65485 0.1172599039364286 YLRVPLYR 8 Unmodified _YLRVPLYR_ 0 0 0 REV__L1PA6_dup1180|chr3:119981230-119987333:+|3.963896827693369|0.0877664786318478|5.5|151.0|365|3|anti-sense REV__L1PA6_dup1180|chr3:119981230-119987333:+|3.963896827693369|0.0877664786318478|5.5|151.0|365|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.3217163085938 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 45.402 1 45.402 44.902 45.902 0 0 0 0 0.40738 1 9229 9229 0.79363 0 1 + 56993 29836 35867 35885 65486 65486 0.09258032330808419 YLRYALAFI 9 Unmodified _YLRYALAFI_ 0 0 0 REV__L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|34|1|anti-sense REV__L1MC5a_dup5001|chr5:32153410-32154268:+|3.0450773436088427|0.1128038131875974|4.75|151.0|34|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 565.323486328125 2 565.32386 1128.63317 0.49584 0.00028031 -0.099021 -5.5979E-05 0.39682 0.00022433 565.3237893107289 71.508 0.44076 75.035 74.823 75.264 3.5266 48 38 2 0 0 0 0.40174 2 16567 16567;16616 7.9102 0 1 133490 + 56994 27159 35868 35886 65487;65488 65487 0.07399496753691892 YLRYQQLAG 9 Unmodified _YLRYQQLAG_ 0 0 0 ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|7|1|sense ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|7|1|sense ERVL-B4-int_dup3107|chr13:41025738-41028733:+|3.692344122194719|0.0249527409919281|7.21|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 556.2989501953125 2 556.298373 1110.58219 0.47235 0.00026277 0.029839 1.6599E-05 0.50218 0.00027936 556.2980148306252 60.986 0.25354 64.251 64.152 64.406 3.2654 32 24 2 0 0 0 0.41259 1 14303 14303 7.2892 0.56607 1 102940 56995 7730 35869 35887 65489 65489 0.03132547708855782 YLSAKLIFE 9 Unmodified _YLSAKLIFE_ 0 0 0 REV__nc|ENSG00000129566|Q99973-2|TEP1 REV__nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS UPN46_class_I_Rep_3 1 542.3077392578125 2 542.307875 1082.6012 0.35636 0.00019326 -0.15893 -8.6187E-05 0.19743 0.00010707 542.3077562097504 80.766 0.27472 80.766 80.685 80.96 0 43 27 2 0 0 0 0.46869 1 19035 19035 3.9444 1.3669 1 238240 + 56996 18925 35870 35888 65490 65490 0.06320084279923321 YLSDDSFVIF 10 Unmodified _YLSDDSFVIF_ 0 0 0 REV__L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|276|2|anti-sense REV__L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|276|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 603.2904663085938 2 603.289879 1204.56521 0.59619 0.00035967 -0.33825 -0.00020407 0.25793 0.00015561 603.2895176128704 54.722 0.60188 58.304 57.966 58.567 3.5817 105 39 3 0 0 0 0.51565 1 11509 11509 10.074 0.6908 1 606080 + 56997 24004 35871 35889 65491 65491 -0.028894176876065103 YLSFPLFNTI 10 Unmodified _YLSFPLFNTI_ 0 0 0 REV__Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|135|2|anti-sense REV__Tigger1_dup10625|chr16:54011506-54013924:+|1.988752609616315|0.2644693801552269|2.91|151.0|135|2|anti-sense MSMS UPN48_class_I_Rep_1 5 607.8360595703125 2 607.826432 1213.63831 NaN NaN NaN NaN NaN NaN NaN 61.83 1 65.298 64.798 65.798 3.4678 0 0 0 0.53105 1 13789 13789 7.2892 0 1 + 56998 32336 35872 35890 65492 65492 0.04003755825669941 YLSFVMLLA 9 Unmodified _YLSFVMLLA_ 0 0 0 ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1 ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENST00000446331.6_1_8:11660331-11696115:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 528.7929077148438 2 528.793546 1055.57254 -0.10705 -5.6608E-05 0.037172 1.9656E-05 -0.06988 -3.6952E-05 528.793486868261 30.834 0.5421 34.579 34.338 34.88 3.7449 76 45 2 0 0 0 0.33654 1 5134 5134 11.64 2.2572 1 118610 56999 1191 35873 35891 65493 65493 0.046976433791314776 YLSIKVLV 8 Unmodified _YLSIKVLV_ 0 0 0 REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|60|2|anti-sense REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_1 2 467.8009948730469 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 63.628 1 66.984 66.484 67.484 3.3557 0 0 0 0.40746 1 15067 15067 0.69038 0 1 + 57000 24199 35874 35892 65494 65494 0.12045306976415304 YLSIKVLV 8 Unmodified _YLSIKVLV_ 0 0 0 REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|60|2|anti-sense REV__L1M2_dup3638|chr6:127350000-127351180:+|1.3044041384065448|0.1894903066246727|2.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_2 3 467.80078125 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 111.65 1 115.17 114.67 115.67 3.5226 0 0 0 0.40746 1 27181 27181 0.69038 0 1 + 57001 24199 35874 35892 65495 65495 0.12045306976415304 YLSKGKVLG 9 Unmodified _YLSKGKVLG_ 0 0 0 LTR78B_dup1617|chr7:139967112-139967402:-|2.04032252903089|0.0518437810515855|5.3|151.0|4|2|sense LTR78B_dup1617|chr7:139967112-139967402:-|2.04032252903089|0.0518437810515855|5.3|151.0|4|2|sense LTR78B_dup1617|chr7:139967112-139967402:-|2.04032252903089|0.0518437810515855|5.3|151.0|4|2|sense MSMS UPN47_class_I_Rep_2 3 482.7954406738281 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 115.65 1 119.14 118.64 119.64 3.4965 0 0 0 0.4029 1 28204 28204 0 0 1 57002 15710 35875 35893 65496 65496 0.09207234828295441 YLSKKVSRK 9 Unmodified _YLSKKVSRK_ 0 0 0 L1ME4b_dup20493|chr20:3990895-3991185:+|1.1146772451023463|0.0037273295283784|8.22|151.0|9|3|sense L1ME4b_dup20493|chr20:3990895-3991185:+|1.1146772451023463|0.0037273295283784|8.22|151.0|9|3|sense L1ME4b_dup20493|chr20:3990895-3991185:+|1.1146772451023463|0.0037273295283784|8.22|151.0|9|3|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 554.3439331054688 2 554.84549 1107.67643 0.43823 0.00024315 0.86296 0.00047881 1.3012 0.00072196 554.8458657973879 77.146 0.20541 80.748 80.693 80.899 3.6016 21 16 2 0 0 0 0.12422 1 18250 18250 2.3027 0 1 89181 57003 12912 35876 35894 65497 65497 0.12689686530984545 YLSKNEELY 9 Unmodified _YLSKNEELY_ 0 0 0 REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|54|1|sense REV__L1PBa_dup98|chr1:193270838-193276348:-|2.607086766788393|0.2059740279133017|3.66|150.0|54|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 579.7875366210938 2 579.787504 1157.56045 0.0089667 5.1988E-06 -0.15238 -8.8347E-05 -0.14341 -8.3149E-05 579.7874444400771 42.18 0.42851 45.859 45.681 46.11 3.6792 38 29 2 0 0 0 0.13244 1 8583 8583 27.629 4.4804 1 75931 + 57004 30668 35877 35895 65498 65498 -0.012023018303580102 YLSKNVKI 8 Unmodified _YLSKNVKI_ 0 0 0 REV__L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|77|2|anti-sense REV__L1MC3_dup11891|chr18:9158113-9159421:-|2.1945740924008588|0.0391354823532161|5.81|151.0|77|2|anti-sense MSMS UPN47_class_I_Rep_1 2 482.7952575683594 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 113.09 1 116.66 116.16 117.16 3.572 0 0 0 0.40625 1 27894 27894 2.3027 0 1 + 57005 26715 35878 35896 65499 65499 0.09207234828284072 YLSLLNQQL 9 Unmodified _YLSLLNQQL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN47_class_I_Rep_1 2 546.3096923828125 2 546.308406 1090.60226 0.42994 0.00023488 0.46485 0.00025395 0.89479 0.00048883 546.3085970236062 75.034 0.74088 78.428 77.749 78.49 3.3937 113 67 3 0 0 0 0.43153 1 18329 18329 6.2058 2.2614 1 745800 57006 3340 35879 35897 65500 65500 0.06058298648804339 YLSLLNQQL 9 Unmodified _YLSLLNQQL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS UPN47_class_I_Rep_2 3 546.3097534179688 2 546.308406 1090.60226 0.42393 0.00023159 1.5176 0.0008291 1.9416 0.0010607 546.3091540561163 74.646 0.15887 77.959 77.853 78.012 3.3127 29 18 2 0 0 0 0.11355 1 18398 18398 31.268 10.815 1 103820 57007 3340 35879 35897 65501 65501 0.06058298648804339 YLSSLLLV 8 Unmodified _YLSSLLLV_ 0 0 0 REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|115|3|anti-sense REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_1 2 454.2799072265625 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 58.998 1 62.415 61.915 62.915 3.4171 0 0 0 0.40738 1 13666 13666 0.79363 0 1 + 57008 25150 35880 35898 65502 65502 0.08561027705445667 YLSSLLLV 8 Unmodified _YLSSLLLV_ 0 0 0 REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|115|3|anti-sense REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_2 3 454.27972412109375 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 50.353 1 53.696 53.196 54.196 3.3431 0 0 0 0.40746 1 11060 11060 0.69038 0 1 + 57009 25150 35880 35898 65503 65503 0.08561027705445667 YLSSLLLV 8 Unmodified _YLSSLLLV_ 0 0 0 REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|115|3|anti-sense REV__L1MA4_dup3107|chr5:36964179-36965812:+|3.4764983405941527|0.1062949203098146|5.03|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_3 4 454.27960205078125 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 56.282 1 59.454 58.954 59.954 3.1721 0 0 0 0.40581 1 12926 12926 2.8892 0 1 + 57010 25150 35880 35898 65504 65504 0.08561027705445667 YLSSQNGQPL 10 Unmodified _YLSSQNGQPL_ 0 0 0 ENSG00000096088|ENST00000373025|PGC ENSG00000096088|ENST00000373025|PGC ENSG00000096088|ENST00000373025|PGC MSMS UPN48_class_I_Rep_1 5 553.7777709960938 2 553.77747 1105.54039 NaN NaN NaN NaN NaN NaN NaN 30.679 1 34.221 33.721 34.721 3.542 0 0 0 0.53105 1 4437 4437 1.3295 0.13619 1 57011 1423 35881 35899 65505 65505 -0.008160527703239495 YLSSSLGTE 9 Unmodified _YLSSSLGTE_ 0 0 0 nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE MSMS UPN48_class_I_Rep_3 7 478.7322998046875 2 478.732197 955.449842 NaN NaN NaN NaN NaN NaN NaN 12.022 1 15.553 15.053 16.053 3.531 0 0 0 0.4029 1 5 5 0 0 1 57012 5792 35882 35900 65506 65506 -0.02966521818586898 YLSTFSKRK 9 Unmodified _YLSTFSKRK_ 0 0 0 REV__ENSG00000143702.16,CEP170,chr1,-,I17.1,243163341,243164283|23|8.67|7|intron REV__ENSG00000143702.16,CEP170,chr1,-,I17.1,243163341,243164283|23|8.67|7|intron MSMS UPN48_class_I_Rep_3 7 565.3239135742188 2 565.321848 1128.62914 NaN NaN NaN NaN NaN NaN NaN 71.857 1 75.384 74.884 75.884 3.5266 0 0 0 0.39598 1 16716 16716 1.6526 0.32309 1 + 57013 19460 35883 35901 65507 65507 0.0699740725999618 YLSVNNLFF 9 Unmodified _YLSVNNLFF_ 0 0 0 REV__L1MB8_dup4723|chr5:76554001-76555321:+|1.2531448296071406|0.0225617736202113|5.8|151.0|91|3|anti-sense REV__L1MB8_dup4723|chr5:76554001-76555321:+|1.2531448296071406|0.0225617736202113|5.8|151.0|91|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 559.2789306640625 2 558.78985 1115.56515 0.54873 0.00030662 -0.14422 -8.0589E-05 0.40451 0.00022603 558.7894700580022 62.093 0.66579 65.567 65.247 65.913 3.4738 119 53 3 0 0 0 0.28552 1 13778 13778 14.838 3.198 1 191290 + 57014 26419 35884 35902 65508 65508 0.011986271030536955 YLSYYRSY 8 Unmodified _YLSYYRSY_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000495755.1_1_6:33235423-33235928:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-MSMS UPN47_class_I_Rep_2 3 557.76416015625 2 557.763832 1113.51311 0.046571 2.5976E-05 -0.65613 -0.00036596 -0.60956 -0.00033999 557.7633452226376 28.945 0.42433 32.438 32.311 32.735 3.4923 54 33 2 0 0 0 0.82752 2 4545 4545;4594 7.2892 0 1 58513 57015 5653 35885 35903 65509;65510 65509 -0.03910536310718271 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN46_class_I_Rep_3 1 532.79736328125 2 532.79734 1063.58013 0.33802 0.0001801 -0.19632 -0.0001046 0.1417 7.5498E-05 532.7971782550924 89.943 0.10271 89.943 89.918 90.02 0 6 4 2 0 0 0 0.37599 1 21675 21675 9.3831 0 1 6934300 57016 4893;609 35886 35904 65511 65511 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_1 2 532.797607421875 2 532.79734 1063.58013 0.41904 0.00022326 0.3588 0.00019117 0.77783 0.00041443 532.7975305906459 84.419 0.35738 87.984 87.788 88.145 3.5655 70 44 3 0 0 0 0.082592 1 21103 21103 37.974 0 1 1831200 57017 4893;609 35886 35904 65512 65512 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_1 2 533.2997436523438 2 532.79734 1063.58013 0.42094 0.00022428 0.75641 0.00040301 1.1774 0.00062729 532.7977483885974 84.687 0.17773 88.279 88.171 88.349 3.5914 44 26 2 0 0 0 0.027484 3 21168 21168;21170;21197 58.679 5.8843 1 634560 57018 4893;609 35886 35904 65513;65514;65515 65513 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_2 3 532.7982177734375 2 532.79734 1063.58013 0.40583 0.00021622 0.61634 0.00032838 1.0222 0.00054461 532.7976547302817 84.562 0.49592 87.985 87.741 88.237 3.4232 90 70 2 0 0 0 0.056917 2 21117 21063;21117 46.021 0 1 335690 57019 4893;609 35886 35904 65516;65517 65517 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MSMS UPN47_class_I_Rep_3 4 532.7974243164062 2 532.79734 1063.58013 0.43795 0.00023334 0.3218 0.00017145 0.75974 0.00040479 532.7974334928145 84.696 0.57819 88.057 87.705 88.283 3.3615 174 77 3 0 0 0 0.0069867 2 21274 21244;21274 123.45 30.628 1 697920 57020 4893;609 35886 35904 65518;65519 65519 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000188486|ENST00000530167|H2AX;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000278677|ENST00000359611|H2AC17;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;chr5:135389126-135399749|128|14.77|0.03|9.14|-|ENST00000304332|MACROH2A1,MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;chr5:135389126-135399786|125|11.89|0.1|6.95|-|ENST00000510038|MACROH2A1,MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000246705|Q9BTM1-2|H2AJ MULTI-MATCH UPN47_class_I_Rep_2 3 2 532.79734 1063.58013 0.40469 0.00021562 -0.18871 -0.00010055 0.21598 0.00011507 533.2984602157509 84.302 0.03791 87.725 87.703 87.741 3.4232 -0.1293 -0.00053744 NaN 37.974 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 22492 57021 4893;609 35886 35904 0.05088074180366675 YLTASVWLT 9 Unmodified _YLTASVWLT_ 0 0 0 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 ENSG00000170837|ENST00000304411|GPR27 MSMS UPN48_class_I_Rep_3 7 527.2853393554688 2 527.2844 1052.55425 NaN NaN NaN NaN NaN NaN NaN 112.81 1 116.47 115.97 116.97 3.6568 0 0 0 0.39518 1 26811 26811 1.8442 0 1 57022 4491 35887 35905 65520 65520 0.030072247287534992 YLTFEKSRY 9 Unmodified _YLTFEKSRY_ 0 0 0 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 MULTI-MSMS UPN47_class_I_Rep_2 3 603.811767578125 2 603.811313 1205.60807 0.51873 0.00031322 -0.04622 -2.7908E-05 0.47251 0.00028531 603.8112142783139 56.848 1.3743 60.149 59.8 61.174 3.3009 269 118 3 0 0 0 0.42249 1 13346 13346 6.7232 0 1 1253300 57023 3420 35888 35906 65521 65521 0.013493971604930266 YLTGFYIGV 9 Unmodified _YLTGFYIGV_ 0 0 0 REV__ENSG00000144659|ENST00000650617|SLC25A38 REV__ENSG00000144659|ENST00000650617|SLC25A38 MSMS UPN46_class_I_Rep_3 1 516.2971801757812 2 516.773668 1031.53278 NaN NaN NaN NaN NaN NaN NaN 82.923 1 82.923 82.423 83.423 0 0 0 0 0.38299 1 19667 19667 4.756 1.1595 1 + 57024 19490 35889 35907 65522 65522 0.018278397000358382 YLTIRYLTH 9 Unmodified _YLTIRYLTH_ 0 0 0 REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|262|2|anti-sense REV__Harlequin-int_dup89|chr2:108525925-108531004:+|1.945087885624773|0.0732405015084217|4.73|151.0|262|2|anti-sense MSMS UPN48_class_I_Rep_2 6 590.3319702148438 2 590.329673 1178.64479 NaN NaN NaN NaN NaN NaN NaN 60.586 1 64.064 63.564 64.564 3.4785 0 0 0 0.2408 1 13392 13392 13.906 0 1 + 57025 23518 35890 35908 65523 65523 0.0626169377703718 YLTKEVKALH 10 Unmodified _YLTKEVKALH_ 0 0 0 L1PB3_dup1309|chr6:110697243-110698797:+|2.379997980632222|0.0136228321876959|7.45|151.0|36|3|sense L1PB3_dup1309|chr6:110697243-110698797:+|2.379997980632222|0.0136228321876959|7.45|151.0|36|3|sense L1PB3_dup1309|chr6:110697243-110698797:+|2.379997980632222|0.0136228321876959|7.45|151.0|36|3|sense MSMS UPN46_class_I_Rep_3 1 601.3497314453125 2 601.350606 1200.68666 NaN NaN NaN NaN NaN NaN NaN 43.218 1 43.218 42.718 43.718 0 0 0 0 0.53105 1 8611 8611 1.1933 0 1 57026 15245 35891 35909 65524 65524 0.09434249465539324 YLTKIKLTT 9 Unmodified _YLTKIKLTT_ 0 0 0 ENST00000443567.5_1_3:15282348-15292515:+|nuORF;ENSG00000131375|ENST00000253693|CAPN7 ENST00000443567.5_1_3:15282348-15292515:+|nuORF ENST00000443567.5_1_3:15282348-15292515:+|nuORF MSMS UPN46_class_I_Rep_3 1 540.8365478515625 2 540.8368 1079.65905 NaN NaN NaN NaN NaN NaN NaN 89.835 1 89.835 89.335 90.335 0 0 0 0 0.4029 1 21633 21633 0 0 1 57027 2707 35892 35910 65525 65525 0.12240346205294372 YLTLLDFGVIY 11 Unmodified _YLTLLDFGVIY_ 0 0 0 REV__L1ME2_dup6811|chr9:70332548-70333307:+|1.6378195053797078|0.078213584857683|4.39|151.0|32|1|anti-sense REV__L1ME2_dup6811|chr9:70332548-70333307:+|1.6378195053797078|0.078213584857683|4.39|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_1 5 439.5749206542969 3 439.576073 1315.70639 NaN NaN NaN NaN NaN NaN NaN 38.045 1 41.55 41.05 42.05 3.5052 0 0 0 0.32078 1 6541 6541 10.899 0 1 + 57028 27873 35893 35911 65526 65526 0.061165806856706695 YLTLVMYFL 9 Unmodified _YLTLVMYFL_ 0 0 0 REV__ENSG00000189357|ENST00000419782|SPATA31D4 REV__ENSG00000189357|ENST00000419782|SPATA31D4 MSMS UPN48_class_I_Rep_2 6 581.8167114257812 2 581.814479 1161.6144 NaN NaN NaN NaN NaN NaN NaN 65.948 1 69.434 68.934 69.934 3.4866 0 0 0 0.38299 1 15029 15029 4.756 0 1 + 57029 20905 35894 35912 65527 65527 0.040061990676349524 YLTNVRDIF 9 Unmodified _YLTNVRDIF_ 0 0 0 L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|84|1|anti-sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|84|1|anti-sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|84|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 571.2875366210938 2 570.806031 1139.59751 0.50761 0.00028974 -0.35411 -0.00020213 0.15349 8.7615E-05 570.8058071034784 66.128 0.35161 69.614 69.515 69.867 3.4866 46 25 2 0 0 0 0.118 1 15062 15062 10.074 10.074 1 184540 57030 12155 35895 35913 65528 65528 0.033294145060153824 YLTQFKIG 8 Unmodified _YLTQFKIG_ 0 0 0 REV__LTR40b_dup906|chr13:21500012-21500337:+|1.2593445444303288|0.4996919401528689|1.33|151.0|2|1|sense REV__LTR40b_dup906|chr13:21500012-21500337:+|1.2593445444303288|0.4996919401528689|1.33|151.0|2|1|sense MSMS UPN48_class_I_Rep_2 6 485.27410888671875 2 485.273835 968.533118 NaN NaN NaN NaN NaN NaN NaN 19.541 1 23.191 22.691 23.691 3.6497 0 0 0 0.40746 1 1509 1509 0.69038 0 1 + 57031 30919 35896 35914 65529 65529 0.04759259419904538 YLTRTRRK 8 Unmodified _YLTRTRRK_ 0 0 0 REV__L1PA3_dup6536|chrX:72440594-72446687:+|3.657870856154072|0.0644905602100551|5.83|150.0|51|2|sense REV__L1PA3_dup6536|chrX:72440594-72446687:+|3.657870856154072|0.0644905602100551|5.83|150.0|51|2|sense MSMS UPN46_class_I_Rep_3 1 547.3322143554688 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 73.26 1 73.26 72.76 73.76 0 0 0 0 0.40738 1 16973 16973 0.79363 0 1 + 57032 29555 35897 35915 65530 65530 0.10899051448268438 YLTRTRRK 8 Unmodified _YLTRTRRK_ 0 0 0 REV__L1PA3_dup6536|chrX:72440594-72446687:+|3.657870856154072|0.0644905602100551|5.83|150.0|51|2|sense REV__L1PA3_dup6536|chrX:72440594-72446687:+|3.657870856154072|0.0644905602100551|5.83|150.0|51|2|sense MSMS UPN48_class_I_Rep_1 5 547.332763671875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 78.354 1 81.876 81.376 82.376 3.5221 0 0 0 0.40581 1 18685 18685 2.8892 0 1 + 57033 29555 35897 35915 65531 65531 0.10899051448268438 YLTSHFHLI 9 Unmodified _YLTSHFHLI_ 0 0 0 REV__L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|98|3|sense REV__L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|98|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 565.8043212890625 2 565.803291 1129.59203 0.49029 0.00027741 -0.14562 -8.2395E-05 0.34467 0.00019501 565.803105350898 67.398 0.6337 70.85 70.509 71.143 3.4516 78 43 3 0 0 0 0.48643 1 15569 15569 2.0598 0 1 237880 + 57034 26084 35898 35916 65532 65532 0.032417357142321634 YLTSHYWL 8 Unmodified _YLTSHYWL_ 0 0 0 REV__L1MA4A_dup5531|chr16:30574577-30575245:-|1.0337179480448462|0.4036500637099175|1.36|151.0|49|3|anti-sense REV__L1MA4A_dup5531|chr16:30574577-30575245:-|1.0337179480448462|0.4036500637099175|1.36|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.76953125 2 541.768917 1081.52328 0.53183 0.00028813 0.034189 1.8522E-05 0.56602 0.00030665 541.7688256964776 59.089 0.91806 62.569 62.212 63.13 3.4801 149 59 3 0 0 0 0.82752 1 12867 12867 23.148 2.6948 1 791060 + 57035 25329 35899 35917 65533 65533 -0.014219285855006092 YLTSHYWL 8 Unmodified _YLTSHYWL_ 0 0 0 REV__L1MA4A_dup5531|chr16:30574577-30575245:-|1.0337179480448462|0.4036500637099175|1.36|151.0|49|3|anti-sense REV__L1MA4A_dup5531|chr16:30574577-30575245:-|1.0337179480448462|0.4036500637099175|1.36|151.0|49|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.7698364257812 2 541.768917 1081.52328 0.48374 0.00026207 0.037224 2.0167E-05 0.52096 0.00028224 541.7688808700987 59.004 0.91629 62.527 62.097 63.013 3.5231 146 61 3 0 0 0 0.82752 1 12725 12725 18.135 2.2878 1 828160 + 57036 25329 35899 35917 65534 65534 -0.014219285855006092 YLTSVISPF 9 Unmodified _YLTSVISPF_ 0 0 0 L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|34|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|34|2|sense L1MB4_dup6518|chr13:20012479-20014068:-|2.4489596207291235|0.0310596355271476|6.3|151.0|34|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.7789916992188 2 513.778951 1025.54335 0.38225 0.00019639 -0.46552 -0.00023917 -0.083265 -4.278E-05 513.7787856648274 68.67 0.46254 72.179 71.946 72.408 3.5094 49 34 2 0 0 0 0.41259 1 15788 15788 7.2892 0 1 114090 57037 10555 35900 35918 65535 65535 0.031598223544506254 YLTVEQCQQ 9 Unmodified _YLTVEQCQQ_ 0 0 0 REV__MER41A_dup1973|chr14:89541213-89541765:+|1.3584951212073606|0.0049788227348849|8.09|151.0|9|2|sense REV__MER41A_dup1973|chr14:89541213-89541765:+|1.3584951212073606|0.0049788227348849|8.09|151.0|9|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 556.2567138671875 2 556.258056 1110.50156 0.59307 0.0003299 -1.5091 -0.00083946 -0.91605 -0.00050956 556.2569261992344 64.427 0.50101 67.881 67.611 68.112 3.4541 62 40 2 0 0 0 0.46869 1 14522 14522 3.9444 1.0552 1 117800 + 57038 31304 35901 35919 65536 65536 -0.0492710139637893 YLTVNRQP 8 Unmodified _YLTVNRQP_ 0 0 0 REV__L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|33|3|sense REV__L1P4_dup1163|chr5:69936486-69937338:-|2.790496637154691|0.2807704697821677|3.31|151.0|33|3|sense MSMS UPN48_class_I_Rep_3 7 495.8337707519531 2 495.771991 989.529429 NaN NaN NaN NaN NaN NaN NaN 50.458 1 54.079 53.579 54.579 3.621 0 0 0 0.40364 1 10239 10239 5.7604 0 1 + 57039 28905 35902 35920 65537 65537 0.034245896460333825 YLTVTKESGN 10 Unmodified _YLTVTKESGN_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP;nc|ENSG00000007944|Q8WY64-2|MYLIP;ENSG00000007944.15,MYLIP,chr6,+,I5.1,16143864,16144896|28|12.2|1|intron ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MSMS UPN48_class_I_Rep_2 6 556.288330078125 2 556.285128 1110.5557 NaN NaN NaN NaN NaN NaN NaN 62.534 1 66.008 65.508 66.508 3.4738 0 0 0 0.53105 1 13984 13984 6.2058 0.44535 1 57040 737 35903 35921 65538 65538 0.0048481402686775255 YLTVVKAI 8 Unmodified _YLTVVKAI_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|25|1|sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|25|1|sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 453.78643798828125 2 453.786579 905.558604 0.034927 1.585E-05 -1.8636 -0.00084566 -1.8286 -0.00082981 453.7855845356099 55.516 1.1009 58.995 58.664 59.765 3.4785 77 63 2 0 0 0 0.82752 1 12525 12525 8.5933 0 1 215430 57041 15306 35904 35922 65539 65539 0.10204733942327948 YLTVVKAI 8 Unmodified _YLTVVKAI_ 0 0 0 L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|25|1|sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|25|1|sense L1PB4_dup2598|chr6:44938036-44941554:-|2.2638415251226705|0.0561119413069614|5.33|151.0|25|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 453.7860107421875 2 453.786579 905.558604 -0.045978 -2.0864E-05 -0.70024 -0.00031776 -0.74622 -0.00033863 453.78606426148707 55.765 0.59615 59.075 58.731 59.327 3.3102 48 35 2 0 0 0 0.82752 1 12642 12642 16.942 0 1 116320 57042 15306 35904 35922 65540 65540 0.10204733942327948 YLTYEENTQ 9 Unmodified _YLTYEENTQ_ 0 0 0 REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense REV__L1ME1_dup6788|chr3:142360903-142361950:-|1.287728345406843|0.0944069329330302|3.77|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 580.7566528320312 2 580.758943 1159.50333 NaN NaN NaN NaN NaN NaN NaN 38.881 1 42.386 41.886 42.886 3.5048 0 0 0 0.39598 1 6794 6794 1.6526 0.17072 1 + 57043 27790 35905 35923 65541 65541 -0.07003769106745494 YLVEQFAKI 9 Unmodified _YLVEQFAKI_ 0 0 0 REV__nc|ENSG00000147050|O15550|KDM6A REV__nc|ENSG00000147050|O15550|KDM6A MULTI-MSMS UPN48_class_I_Rep_1 5 556.3153076171875 2 555.813325 1109.6121 0.64933 0.0003609 -0.33466 -0.00018601 0.31466 0.00017489 555.8129322054676 60.649 0.35692 64.122 63.899 64.256 3.4737 39 26 2 0 0 0 0.26468 1 13376 13376 16.149 0 1 100790 + 57044 19556 35906 35924 65542 65542 0.061674866541807205 YLVEQFAKI 9 Unmodified _YLVEQFAKI_ 0 0 0 REV__nc|ENSG00000147050|O15550|KDM6A REV__nc|ENSG00000147050|O15550|KDM6A MULTI-MSMS UPN48_class_I_Rep_2 6 555.81298828125 2 555.813325 1109.6121 0.5653 0.0003142 -0.084517 -4.6976E-05 0.48078 0.00026723 555.8130983572045 60.615 0.52851 64.094 63.73 64.258 3.4785 62 48 2 0 0 0 0.12096 2 13344 13325;13344 29.841 0 1 140150 + 57045 19556 35906 35924 65543;65544 65544 0.061674866541807205 YLVEQFAKI 9 Unmodified _YLVEQFAKI_ 0 0 0 REV__nc|ENSG00000147050|O15550|KDM6A REV__nc|ENSG00000147050|O15550|KDM6A MULTI-MSMS UPN48_class_I_Rep_3 7 555.8133544921875 2 555.813325 1109.6121 0.3888 0.0002161 -0.032525 -1.8078E-05 0.35628 0.00019802 555.8133723764937 60.499 0.40406 64.015 63.663 64.067 3.5169 52 34 2 0 0 0 0.21414 1 13218 13218 19.362 0 1 129540 + 57046 19556 35906 35924 65545 65545 0.061674866541807205 YLVFHCYS 8 Unmodified _YLVFHCYS_ 0 0 0 REV__ENSG00000091127|ENST00000469408|PUS7 REV__ENSG00000091127|ENST00000469408|PUS7 MSMS UPN47_class_I_Rep_2 3 516.2371215820312 2 516.236396 1030.45824 NaN NaN NaN NaN NaN NaN NaN 30.832 1 34.314 33.814 34.814 3.4821 0 0 0 0.40746 1 5138 5138 0.69038 0 1 + 57047 18014 35907 35925 65546 65546 -0.05577246382972589 YLVFYFTE 8 Unmodified _YLVFYFTE_ 0 0 0 L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|199|3|anti-sense;L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|424|3|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|199|3|anti-sense L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|199|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 540.7642822265625 2 541.265676 1080.5168 0.10144 5.4904E-05 -0.58537 -0.00031684 -0.48393 -0.00026194 541.2656718958286 43.641 0.067547 46.998 46.953 47.02 3.358 5 3 2 0 0 0 0.72333 1 9028 9028 0.79363 0 1 31710 57048 9363 35908 35926 65547 65547 -0.02023866536865171 YLVGRPVV 8 Unmodified _YLVGRPVV_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN47_class_I_Rep_1 2 451.7765808105469 2 451.776545 901.538538 -0.34935 -0.00015783 -0.27724 -0.00012525 -0.62659 -0.00028308 451.77628559338655 38.829 0.73652 42.494 42.192 42.929 3.6652 64 47 2 0 0 0 0.82752 2 7478 7478;7505 15.768 0 1 76378 57049 4243 35909 35927 65548;65549 65548 0.08382983002377387 YLVGRPVV 8 Unmodified _YLVGRPVV_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN47_class_I_Rep_2 3 451.7760009765625 2 451.776545 901.538538 -0.54057 -0.00024422 -0.15492 -6.9989E-05 -0.69549 -0.00031421 451.7763536103472 39.339 0.81983 42.718 42.359 43.179 3.3785 59 46 2 0 0 0 0.82752 1 7825 7825 10.183 0 1 77578 57050 4243 35909 35927 65550 65550 0.08382983002377387 YLVGRPVV 8 Unmodified _YLVGRPVV_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000533867.1_1_11:9304973-9309374:-|nuORF;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS UPN47_class_I_Rep_3 4 451.77593994140625 2 451.776545 901.538538 -0.70855 -0.00032011 0.055051 2.4871E-05 -0.6535 -0.00029524 451.77642764491327 39.491 0.7653 42.729 42.388 43.153 3.238 68 50 2 0 0 0 0.82752 1 7878 7878 20.871 5.103 1 79783 57051 4243 35909 35927 65551 65551 0.08382983002377387 YLVGSLCF 8 Unmodified _YLVGSLCF_ 0 0 0 REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|96|1|anti-sense REV__L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|96|1|anti-sense MSMS UPN47_class_I_Rep_3 4 451.241455078125 2 451.228039 900.441526 NaN NaN NaN NaN NaN NaN NaN 40.185 1 43.422 42.922 43.922 3.2372 0 0 0 0.40581 1 8022 8022 2.8892 0 1 + 57052 24415 35910 35928 65552 65552 -0.012677472689460956 YLVHTIIL 8 Unmodified _YLVHTIIL_ 0 0 0 L1ME4b_dup16029|chr13:79379802-79380497:+|1.0263080708079055|0.091776857903205|3.48|151.0|28|1|anti-sense L1ME4b_dup16029|chr13:79379802-79380497:+|1.0263080708079055|0.091776857903205|3.48|151.0|28|1|anti-sense L1ME4b_dup16029|chr13:79379802-79380497:+|1.0263080708079055|0.091776857903205|3.48|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_2 6 486.3016662597656 2 486.299853 970.585153 NaN NaN NaN NaN NaN NaN NaN 70 1 73.521 73.021 74.021 3.5216 0 0 0 0.40738 1 16255 16255 0.79363 0 1 57053 12894 35911 35929 65553 65553 0.09868422833676505 YLVHVIGT 8 Unmodified _YLVHVIGT_ 0 0 0 L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 451.2602844238281 2 451.260728 900.506903 -0.34896 -0.00015747 0.15013 6.7747E-05 -0.19883 -8.9725E-05 451.2608165840166 39.279 0.38824 42.944 42.689 43.077 3.6652 29 23 2 0 0 0 0.82752 1 7686 7686 0.79363 0 1 45291 57054 14636 35912 35930 65554 65554 0.05266990248446746 YLVHVIGT 8 Unmodified _YLVHVIGT_ 0 0 0 L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense MSMS UPN47_class_I_Rep_1 2 451.2424011230469 2 451.260728 900.506903 NaN NaN NaN NaN NaN NaN NaN 39.443 1 43.109 42.609 43.609 3.6668 0 0 0 0.40581 1 7714 7714 2.8892 0 1 57055 14636 35912 35930 65555 65555 0.05266990248446746 YLVHVIGT 8 Unmodified _YLVHVIGT_ 0 0 0 L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense L1PA6_dup4599|chr12:3851136-3857278:+|1.1491537652566357|0.0554335859139236|4.37|151.0|127|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 451.77587890625 2 451.260728 900.506903 -0.54577 -0.00024628 0.2856 0.00012888 -0.26016 -0.0001174 451.2607151205079 39.642 0.42835 43.02 42.736 43.165 3.3785 34 26 2 0 0 0 0.72333 1 7744 7744 2.8892 0 1 45632 57056 14636 35912 35930 65556 65556 0.05266990248446746 YLVIDSHFVL 10 Unmodified _YLVIDSHFVL_ 0 0 0 L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense MSMS UPN47_class_I_Rep_1 2 603.3304443359375 2 603.331882 1204.64921 NaN NaN NaN NaN NaN NaN NaN 57.277 1 60.723 60.223 61.223 3.4454 0 0 0 0.53105 1 13143 13143 10.824 0 1 57057 15225 35913 35931 65557 65557 0.05507158199952755 YLVIDSHFVL 10 Unmodified _YLVIDSHFVL_ 0 0 0 L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 603.81201171875 2 603.331882 1204.64921 0.51898 0.00031312 -0.65952 -0.00039791 -0.14054 -8.4793E-05 603.8326415648604 57.551 0.33444 60.843 60.691 61.026 3.2912 40 30 2 0 0 0 0.37534 1 13267 13267 21.747 0 1 132110 57058 15225 35913 35931 65558 65558 0.05507158199952755 YLVIDSHFVL 10 Unmodified _YLVIDSHFVL_ 0 0 0 L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 603.8115234375 2 603.331882 1204.64921 0.3645 0.00021992 -0.55176 -0.00033289 -0.18725 -0.00011298 603.3316368055704 57.673 0.6133 60.842 60.491 61.105 3.1681 63 51 2 0 0 0 0.44806 1 13326 13326 15.847 0 1 119150 57059 15225 35913 35931 65559 65559 0.05507158199952755 YLVIDSHFVL 10 Unmodified _YLVIDSHFVL_ 0 0 0 L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense L1PB2_dup1639|chrX:79291586-79292799:+|1.056713894533613|0.0019145255515083|9.11|151.0|62|2|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 603.331882 1204.64921 0.3645 0.00021992 -0.55176 -0.00033289 -0.18725 -0.00011298 603.3316368055704 57.673 0.6133 60.842 60.491 61.105 3.1681 -0.00059623 3.6941E-05 NaN 21.747 63 51 2 NaN NaN NaN NaN 0 NaN NaN 0 119150 57060 15225 35913 35931 0.05507158199952755 YLVIPRKA 8 Unmodified _YLVIPRKA_ 0 0 0 MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|346|3|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|346|3|anti-sense MER50-int_dup247|chr9:21922598-21928866:+|3.0337938460542757|0.3907950057478037|2.96|151.0|346|3|anti-sense MSMS UPN47_class_I_Rep_1 2 480.2920837402344 2 480.30547 958.596387 NaN NaN NaN NaN NaN NaN NaN 24.826 1 28.575 28.075 29.075 3.7495 0 0 0 0.40746 1 3311 3311 0.69038 0 1 57061 16059 35914 35932 65560 65560 0.11543244927793239 YLVLGVYWV 9 Unmodified _YLVLGVYWV_ 0 0 0 REV__L1MC1_dup12800|chr22:31692950-31693722:-|1.205108798702305|0.0354009285739988|5.09|150.0|54|3|anti-sense REV__L1MC1_dup12800|chr22:31692950-31693722:-|1.205108798702305|0.0354009285739988|5.09|150.0|54|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 555.7863159179688 2 556.312961 1110.61137 0.40933 0.00022772 -2.4744 -0.0013765 -2.0651 -0.0011488 556.3114769495577 61.998 0.049221 65.508 65.489 65.538 3.5104 6 3 2 0 0 0 0.12182 1 13750 13750 5.2307 0 1 42546 + 57062 26525 35915 35933 65561 65561 0.06048692005128942 YLVLLHTH 8 Unmodified _YLVLLHTH_ 0 0 0 MLT1G_dup1619|chrX:44908270-44908798:-|1.8837496245582344|0.014142751698633|7.06|151.0|13|3|sense MLT1G_dup1619|chrX:44908270-44908798:-|1.8837496245582344|0.014142751698633|7.06|151.0|13|3|sense MLT1G_dup1619|chrX:44908270-44908798:-|1.8837496245582344|0.014142751698633|7.06|151.0|13|3|sense MSMS UPN48_class_I_Rep_3 7 498.285400390625 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 22.037 1 25.751 25.251 26.251 3.7144 0 0 0 0.40604 1 2184 2184 2.5775 0 1 57063 16403 35916 35934 65562 65562 0.06250368031078324 YLVLPILK 8 Unmodified _YLVLPILK_ 0 0 0 HAL1_dup723|chr1:97656364-97656736:-|1.0635497154628375|0.0165394667145683|6.01|151.0|17|1|anti-sense HAL1_dup723|chr1:97656364-97656736:-|1.0635497154628375|0.0165394667145683|6.01|151.0|17|1|anti-sense HAL1_dup723|chr1:97656364-97656736:-|1.0635497154628375|0.0165394667145683|6.01|151.0|17|1|anti-sense MSMS UPN48_class_I_Rep_2 6 479.8213806152344 2 479.820421 957.62629 NaN NaN NaN NaN NaN NaN NaN 116.05 1 119.71 119.21 120.21 3.6607 0 0 0 0.40746 1 27791 27791 0.69038 0 1 57064 7909 35917 35935 65563 65563 0.14578183873140915 YLVMKRVS 8 Unmodified _YLVMKRVS_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS UPN47_class_I_Rep_2 3 498.2912902832031 2 498.288963 994.563372 NaN NaN NaN NaN NaN NaN NaN 112.22 1 115.74 115.24 116.24 3.5226 0 0 0 0.40738 1 27329 27329 0.79363 0 1 57065 2493 35918 35936 65564 65564 0.06587294813448352 YLVPASTLK 9 Unmodified _YLVPASTLK_ 0 0 0 MLT1A1-int_dup69|chr2:161197886-161198552:-|1.505106563175205|0.2077384162111067|2.86|151.0|22|1|anti-sense MLT1A1-int_dup69|chr2:161197886-161198552:-|1.505106563175205|0.2077384162111067|2.86|151.0|22|1|anti-sense MLT1A1-int_dup69|chr2:161197886-161198552:-|1.505106563175205|0.2077384162111067|2.86|151.0|22|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 496.2955322265625 2 496.294768 990.574983 0.19531 9.6933E-05 1.4558 0.00072248 1.6511 0.00081942 496.2954350051731 36.776 0.090599 36.776 36.71 36.8 0 11 6 3 0 0 0 0.48846 1 6858 6858 1.8442 1.0506 1 304380 57066 16268 35919 35937 65565 65565 0.07931815108429419 YLVPGLIV 8 Unmodified _YLVPGLIV_ 0 0 0 REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|42|2|sense REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|42|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 436.7747802734375 2 437.275847 872.537141 0.15066 6.5879E-05 1.3362 0.00058431 1.4869 0.00065019 437.2762190682804 84.859 0.088852 84.859 84.779 84.868 0 17 7 3 0 0 0 0.72333 1 20207 20207 0 0 1 201640 + 57067 30969 35920 35938 65566 65566 0.09577348913626338 YLVPGLIV 8 Unmodified _YLVPGLIV_ 0 0 0 REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|42|2|sense REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|42|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 437.27569580078125 2 437.275847 872.537141 0.14893 6.5123E-05 0.30724 0.00013435 0.45617 0.00019947 437.27576014690754 64.166 0.56384 67.64 67.202 67.766 3.4743 64 42 2 0 0 0 0.82752 1 14393 14393 0.79363 0 1 154320 + 57068 30969 35920 35938 65567 65567 0.09577348913626338 YLVPGLIV 8 Unmodified _YLVPGLIV_ 0 0 0 REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|42|2|sense REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|42|2|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 437.52679443359375 2 437.275847 872.537141 0.15444 6.7533E-05 0.13952 6.101E-05 0.29396 0.00012854 437.27568531949083 63.163 0.29824 66.637 66.558 66.856 3.4738 34 25 2 0 0 0 0.72333 1 14242 14242 0 0 1 147570 + 57069 30969 35920 35938 65568 65568 0.09577348913626338 YLVPIPTV 8 Unmodified _YLVPIPTV_ 0 0 0 REV__ENSG00000178971|ENST00000651323|CTC1 REV__ENSG00000178971|ENST00000651323|CTC1 MSMS UPN47_class_I_Rep_3 4 451.26934814453125 2 451.273304 900.532055 NaN NaN NaN NaN NaN NaN NaN 39.311 1 42.549 42.049 43.049 3.238 0 0 0 0.40364 1 7752 7752 5.7604 0 1 + 57070 20665 35921 35939 65569 65569 0.07781045050990087 YLVPPISEA 9 Unmodified _YLVPPISEA_ 0 0 0 HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|23|3|anti-sense HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|23|3|anti-sense HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|23|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 494.771240234375 2 494.771126 987.527698 0.19995 9.8928E-05 -0.059738 -2.9557E-05 0.14021 6.9371E-05 494.77108451577476 78.061 0.34108 81.583 81.373 81.714 3.5221 49 37 2 0 0 0 0.3898 1 18579 18579 8.5933 0 1 121710 57071 7913 35922 35940 65570 65570 0.033435358374163116 YLVPPISEA 9 Unmodified _YLVPPISEA_ 0 0 0 HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|23|3|anti-sense HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|23|3|anti-sense HAL1_dup8206|chr5:170074519-170074911:-|1.0312461288969628|0.0289631830493418|5.15|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_3 7 494.7719421386719 2 494.771126 987.527698 NaN NaN NaN NaN NaN NaN NaN 78.324 1 81.945 81.445 82.445 3.6216 0 0 0 0.34056 1 18538 18538 8.5933 0 1 57072 7913 35922 35940 65571 65571 0.033435358374163116 YLVRSFAI 8 Unmodified _YLVRSFAI_ 0 0 0 REV__L1ME1_dup24680|chr14:50219126-50219726:+|1.5537129762627462|0.0075359612391724|7.69|151.0|26|1|anti-sense REV__L1ME1_dup24680|chr14:50219126-50219726:+|1.5537129762627462|0.0075359612391724|7.69|151.0|26|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 484.8160400390625 2 484.781828 967.549102 0.091145 4.4186E-05 0.18768 9.0982E-05 0.27882 0.00013517 484.78162175762526 62.061 0.83505 65.228 64.879 65.714 3.1667 120 58 3 0 0 0 0.72333 1 14719 14719 25.399 0 1 144480 + 57073 27696 35923 35941 65572 65572 0.06402965656809556 YLVRVHVP 8 Unmodified _YLVRVHVP_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS UPN48_class_I_Rep_2 6 492.7969055175781 2 491.795269 981.575986 0.20731 0.00010195 0.0069726 3.4291E-06 0.21428 0.00010538 491.7956809072509 41.515 0.20062 45.266 45.137 45.338 3.7508 42 22 3 0 0 0 0.82752 1 7574 7574 0.79363 0 1 86118 57074 3289 35924 35942 65573 65573 0.08446074267999393 YLVRVHVP 8 Unmodified _YLVRVHVP_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 491.795269 981.575986 0.20731 0.00010195 0.0069726 3.4291E-06 0.21428 0.00010538 491.7956809072509 41.515 0.20062 45.266 45.137 45.338 3.7508 0.041839 -0.00066666 NaN 0.79363 42 22 3 NaN NaN NaN NaN 0 NaN NaN 0 86118 57075 3289 35924 35942 0.08446074267999393 YLVSALKI 8 Unmodified _YLVSALKI_ 0 0 0 REV__L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|13|1|sense REV__L1M4a2_dup1923|chr19:19468394-19469149:+|2.345259670803205|0.0831274089614783|4.82|151.0|13|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 453.7850341796875 2 453.786579 905.558604 0.034927 1.585E-05 -1.8636 -0.00084566 -1.8286 -0.00082981 453.7855845356099 55.516 1.1009 58.995 58.664 59.765 3.4785 77 63 2 0 0 0 0.82752 1 12642 12642 7.9102 0 1 215430 + 57076 24508 35925 35943 65574 65574 0.10204733942327948 YLVTKVIA 8 Unmodified _YLVTKVIA_ 0 0 0 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MULTI-MSMS UPN47_class_I_Rep_1 2 453.7855224609375 2 453.786579 905.558604 0.034927 1.585E-05 -1.8636 -0.00084566 -1.8286 -0.00082981 453.7855845356099 55.516 1.1009 58.995 58.664 59.765 3.4785 77 63 2 0 0 0 0.82752 4 12788 12564;12681;12732;12788 5.2307 0 1 215430 57077 5719 35926 35944 65575;65576;65577;65578 65578 0.1020473394231658 YLVTKVIA 8 Unmodified _YLVTKVIA_ 0 0 0 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MSMS UPN47_class_I_Rep_1 2 453.78485107421875 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 76.188 1 79.591 79.091 80.091 3.4034 0 0 0 0.40738 1 18841 18841 0.79363 0 1 57078 5719 35926 35944 65579 65579 0.1020473394231658 YLVTKVIA 8 Unmodified _YLVTKVIA_ 0 0 0 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MULTI-MSMS UPN47_class_I_Rep_2 3 453.7859191894531 2 453.786579 905.558604 -0.045978 -2.0864E-05 -0.70024 -0.00031776 -0.74622 -0.00033863 453.78606426148707 55.765 0.59615 59.075 58.731 59.327 3.3102 48 35 2 0 0 0 0.82752 2 12690 12690;12734 5.2307 0 1 116320 57079 5719 35926 35944 65580;65581 65580 0.1020473394231658 YLVTKVIA 8 Unmodified _YLVTKVIA_ 0 0 0 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MSMS UPN47_class_I_Rep_2 3 453.7861022949219 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 56.121 1 59.422 58.922 59.922 3.3009 0 0 0 0.40625 1 12822 12822 2.3027 0 1 57080 5719 35926 35944 65582 65582 0.1020473394231658 YLVTKVIA 8 Unmodified _YLVTKVIA_ 0 0 0 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MULTI-MSMS UPN47_class_I_Rep_3 4 453.7852783203125 2 453.786579 905.558604 -0.23458 -0.00010645 -0.94597 -0.00042927 -1.1805 -0.00053571 453.7859620854901 56.045 0.8224 59.217 58.591 59.413 3.1721 66 53 2 0 0 0 0.82752 4 12729 12729;12784;12829;12886 5.2307 0 1 200510 57081 5719 35926 35944 65583;65584;65585;65586 65583 0.1020473394231658 YLVVQSRT 8 Unmodified _YLVVQSRT_ 0 0 0 REV__MSTA_dup17643|chr17:72826060-72826443:+|1.1075880458288034|0.0273561193337769|5.34|150.0|14|3|sense REV__MSTA_dup17643|chr17:72826060-72826443:+|1.1075880458288034|0.0273561193337769|5.34|150.0|14|3|sense MSMS UPN47_class_I_Rep_3 4 483.2908630371094 2 483.274367 964.53418 NaN NaN NaN NaN NaN NaN NaN 25.116 1 28.467 27.967 28.967 3.3509 0 0 0 0.40738 1 3479 3479 0.79363 0 1 + 57082 31842 35927 35945 65587 65587 0.050494737888243435 YLVYVRFV 8 Unmodified _YLVYVRFV_ 0 0 0 REV__L1M4_dup17223|chr16:10394061-10396245:+|3.107861529164368|0.0752798218370668|5.37|151.0|86|1|anti-sense REV__L1M4_dup17223|chr16:10394061-10396245:+|3.107861529164368|0.0752798218370668|5.37|151.0|86|1|anti-sense MSMS UPN47_class_I_Rep_1 2 529.8057250976562 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 22.214 1 25.889 25.389 26.389 3.6749 0 0 0 0.40746 1 2545 2545 0.69038 0 1 + 57083 24390 35928 35946 65588 65588 0.06955825207955968 YLVYVRFV 8 Unmodified _YLVYVRFV_ 0 0 0 REV__L1M4_dup17223|chr16:10394061-10396245:+|3.107861529164368|0.0752798218370668|5.37|151.0|86|1|anti-sense REV__L1M4_dup17223|chr16:10394061-10396245:+|3.107861529164368|0.0752798218370668|5.37|151.0|86|1|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8054809570312 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 26.49 1 30.256 29.756 30.756 3.7663 0 0 0 0.40738 1 3360 3360 0.79363 0 1 + 57084 24390 35928 35946 65589 65589 0.06955825207955968 YLWELFYN 8 Unmodified _YLWELFYN_ 0 0 0 REV__L1MA1_dup3920|chr17:58257234-58259815:-|1.2827695749693928|0.0099426614595402|7.01|148.0|164|3|anti-sense REV__L1MA1_dup3920|chr17:58257234-58259815:-|1.2827695749693928|0.0099426614595402|7.01|148.0|164|3|anti-sense MSMS UPN47_class_I_Rep_3 4 574.2762451171875 2 574.276575 1146.5386 NaN NaN NaN NaN NaN NaN NaN 89.354 1 92.747 92.247 93.247 3.3931 0 0 0 0.40746 1 22404 22404 0.69038 0 1 + 57085 24800 35929 35947 65590 65590 -0.028810617882982115 YLWEQLQKM 9 Unmodified _YLWEQLQKM_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MSMS UPN48_class_I_Rep_1 5 619.8173828125 2 619.815541 1237.61653 NaN NaN NaN NaN NaN NaN NaN 72.673 1 76.146 75.646 76.646 3.4732 0 0 0 0.38478 1 17072 17072 4.3292 0 1 57086 5061 35930 35948 65591 65591 0.007226278054304203 YLWICHIW 8 Unmodified _YLWICHIW_ 0 0 0 L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|278|2|anti-sense L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|278|2|anti-sense L1MA3_dup6526|chr11:88267948-88273453:+|1.164299673152568|0.0191888905819363|5.92|151.0|278|2|anti-sense MSMS UPN48_class_I_Rep_2 6 567.2821044921875 2 567.28368 1132.55281 NaN NaN NaN NaN NaN NaN NaN 23.394 1 27.037 26.537 27.537 3.6432 0 0 0 0.40738 1 2546 2546 0.79363 0.10326 1 57087 9609 35931 35949 65592 65592 -0.008166878410065692 YLWKARLPR 9 Unmodified _YLWKARLPR_ 0 0 0 ENST00000366691.3_1_1:228881433-228881583:+|nuORF ENST00000366691.3_1_1:228881433-228881583:+|nuORF ENST00000366691.3_1_1:228881433-228881583:+|nuORF MSMS UPN48_class_I_Rep_1 5 601.9274291992188 2 601.861475 1201.7084 NaN NaN NaN NaN NaN NaN NaN 49.584 1 53.109 52.609 53.609 3.5246 0 0 0 0.40038 1 10036 10036 0.6015 0.076735 1 57088 6338 35932 35950 65593 65593 0.11561099004779862 YLWKLYGL 8 Unmodified _YLWKLYGL_ 0 0 0 REV__Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|3|1|sense REV__Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|3|1|sense MSMS UPN47_class_I_Rep_1 2 528.3013305664062 2 528.299853 1054.58515 NaN NaN NaN NaN NaN NaN NaN 95.76 1 99.525 99.025 100.03 3.7648 0 0 0 0.40738 1 23767 23767 0.79363 0 1 + 57089 23996 35933 35951 65594 65594 0.06004422833666467 YLWKLYGL 8 Unmodified _YLWKLYGL_ 0 0 0 REV__Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|3|1|sense REV__Kanga2_a_dup286|chr3:50023981-50024259:+|2.3867629553672223|0.0120149453737154|7.63|151.0|3|1|sense MSMS UPN48_class_I_Rep_1 5 528.302490234375 2 528.299853 1054.58515 NaN NaN NaN NaN NaN NaN NaN 96.124 1 99.737 99.237 100.24 3.6124 0 0 0 0.40738 1 23150 23150 0.79363 0 1 + 57090 23996 35933 35951 65595 65595 0.06004422833666467 YLWVLGPI 8 Unmodified _YLWVLGPI_ 0 0 0 ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENST00000526069.1_1_16:14915456-14916883:-|nuORF;nc|ENSG00000091262|O95255-2|ABCC6;ENST00000542005.2_1_16:14916664-14918526:-|nuORF ENSG00000091262|ENST00000205557|ABCC6 ENSG00000091262|ENST00000205557|ABCC6 MSMS UPN47_class_I_Rep_3 4 480.81646728515625 2 480.781296 959.54804 NaN NaN NaN NaN NaN NaN NaN 51.104 1 54.321 53.821 54.821 3.2163 0 0 0 0.4032 1 11345 11345 6.3541 0.59368 1 57091 1370 35934 35952 65596 65596 0.06664751287883064 YLWYKNIL 8 Unmodified _YLWYKNIL_ 0 0 0 L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|30|2|anti-sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|30|2|anti-sense L1MB7_dup11271|chr9:120834980-120835443:+|1.5554078544264482|0.0469679380229476|5.05|151.0|30|2|anti-sense MSMS UPN48_class_I_Rep_1 5 556.821044921875 2 556.810585 1111.60662 NaN NaN NaN NaN NaN NaN NaN 63.975 1 67.433 66.933 67.933 3.4578 0 0 0 0.38547 1 14445 14445 13.508 0 1 57092 10679 35935 35953 65597 65597 0.055278078623587135 YLYAKKKKK 9 Unmodified _YLYAKKKKK_ 0 0 0 L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|35|3|sense L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|35|3|sense L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|35|3|sense MSMS UPN47_class_I_Rep_3 4 585.3753051757812 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 41.331 1 44.568 44.068 45.068 3.2372 0 0 0 0.40038 1 8374 8374 0.6015 0.076735 1 57093 9771 35936 35954 65598 65598 0.1555973408749196 YLYAKMKN 8 Unmodified _YLYAKMKN_ 0 0 0 REV__AluSz_dup40562|chr7:102389598-102389904:-|1.3793252842693309|0.1967175026923899|2.81|151.0|5|2|sense REV__AluSz_dup40562|chr7:102389598-102389904:-|1.3793252842693309|0.1967175026923899|2.81|151.0|5|2|sense MSMS UPN48_class_I_Rep_2 6 515.7750854492188 2 515.773145 1029.53174 NaN NaN NaN NaN NaN NaN NaN 72.209 1 75.773 75.273 76.273 3.5645 0 0 0 0.38547 1 16886 16886 13.508 0 1 + 57094 17203 35937 35955 65599 65599 0.018153020594809277 YLYANLHSSI 10 Unmodified _YLYANLHSSI_ 0 0 0 L1MB7_dup14042|chr10:86496134-86497019:+|2.109299874879376|0.1370421502295081|3.94|151.0|6|1|sense L1MB7_dup14042|chr10:86496134-86497019:+|2.109299874879376|0.1370421502295081|3.94|151.0|6|1|sense L1MB7_dup14042|chr10:86496134-86497019:+|2.109299874879376|0.1370421502295081|3.94|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 590.8030395507812 2 590.803488 1179.59242 NaN NaN NaN NaN NaN NaN NaN 59.625 1 62.898 62.398 63.398 3.2731 0 0 0 0.53105 1 13892 13892 3.2813 0.54611 1 57095 10711 35938 35956 65600 65600 0.009811106434199246 YLYDRIRK 8 Unmodified _YLYDRIRK_ 0 0 0 nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP MULTI-MSMS UPN48_class_I_Rep_3 7 563.82275390625 2 563.822015 1125.62948 0.35307 0.00019907 -0.28955 -0.00016325 0.063519 3.5813E-05 563.82175124934 44.831 0.3957 48.468 48.295 48.691 3.6372 36 24 2 0 0 0 0.82752 1 8559 8559 4.756 0.42677 1 123740 57096 1826 35939 35957 65601 65601 0.0716882697984147 YLYFFLQF 8 Unmodified _YLYFFLQF_ 0 0 0 L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|47|2|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|47|2|sense L1MC4_dup6134|chr4:53412046-53413991:-|1.945087885624773|0.1013656253039136|4.26|151.0|47|2|sense MSMS UPN47_class_I_Rep_3 4 570.79150390625 2 570.791861 1139.56917 NaN NaN NaN NaN NaN NaN NaN 72.779 1 76.006 75.506 76.506 3.2271 0 0 0 0.40625 1 17936 17936 2.3027 0 1 57097 11516 35940 35958 65602 65602 0.004967165967400433 YLYGTFCDL 9 Unmodified _YLYGTFCDL_ 0 0 0 REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|38|2|sense REV__L1MD2_dup7530|chr11:11911438-11913486:+|5.195766681280195|0.2742983907320427|4.24|151.0|38|2|sense MSMS UPN48_class_I_Rep_1 5 547.7453002929688 2 547.746793 1093.47903 NaN NaN NaN NaN NaN NaN NaN 88.077 1 91.696 91.196 92.196 3.6187 0 0 0 0.36505 1 21122 21122 7.2892 0 1 + 57098 27431 35941 35959 65603 65603 -0.06396700793970922 YLYHCVMPF 9 Unmodified _YLYHCVMPF_ 0 0 0 L1PA7_dup106|chr1:55112194-55113128:-|2.1338867491909013|0.1225261759478073|4.12|151.0|59|3|anti-sense L1PA7_dup106|chr1:55112194-55113128:-|2.1338867491909013|0.1225261759478073|4.12|151.0|59|3|anti-sense L1PA7_dup106|chr1:55112194-55113128:-|2.1338867491909013|0.1225261759478073|4.12|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_1 5 586.764404296875 2 586.767006 1171.51946 NaN NaN NaN NaN NaN NaN NaN 23.128 1 26.689 26.189 27.189 3.5605 0 0 0 0.39326 1 2363 2363 2.3027 0 1 57099 14707 35942 35960 65604 65604 -0.05944057675219483 YLYHFYLL 8 Unmodified _YLYHFYLL_ 0 0 0 Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 566.2974853515625 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 56.64 1 59.941 59.441 60.441 3.3009 0 0 0 0.4032 1 12982 12982 6.3541 0 1 57100 33390 35943 35961 65605 65605 0.020001189710455947 YLYHFYLL 8 Unmodified _YLYHFYLL_ 0 0 0 Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense Tigger3b_dup4189|chr10:73224906-73226064:+|1.4627199695754245|0.2892485987619172|2.34|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 566.2962036132812 2 566.29731 1130.58007 NaN NaN NaN NaN NaN NaN NaN 56.993 1 60.166 59.666 60.666 3.1721 0 0 0 0.40581 1 13139 13139 2.8892 0 1 57101 33390 35943 35961 65606 65606 0.020001189710455947 YLYHGILP 8 Unmodified _YLYHGILP_ 0 0 0 L1MD2_dup8924|chr15:64535337-64535957:-|4.001826242214686|0.0226607214902221|7.46|151.0|5|1|sense L1MD2_dup8924|chr15:64535337-64535957:-|4.001826242214686|0.0226607214902221|7.46|151.0|5|1|sense L1MD2_dup8924|chr15:64535337-64535957:-|4.001826242214686|0.0226607214902221|7.46|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 488.2693176269531 2 488.268553 974.522553 0.13662 6.6709E-05 0.6332 0.00030917 0.76982 0.00037588 488.26887125524934 63.707 0.3821 67.063 66.758 67.14 3.3557 40 32 2 0 0 0 0.82752 2 15059 15059;15100 11.114 0 1 61936 57102 12043 35944 35962 65607;65608 65607 0.03427276765478382 YLYHKFHQ 8 Unmodified _YLYHKFHQ_ 0 0 0 nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1 nc|ENSG00000148200|Q15406-3|NR6A1 nc|ENSG00000148200|Q15406-3|NR6A1 MSMS UPN48_class_I_Rep_3 7 568.2880249023438 2 568.287808 1134.56106 NaN NaN NaN NaN NaN NaN NaN 66.442 1 69.95 69.45 70.45 3.5077 0 0 0 0.40581 1 15091 15091 2.8892 0 1 57103 3494 35945 35963 65609 65609 -0.0008341760001258081 YLYHLCLP 8 Unmodified _YLYHLCLP_ 0 0 0 Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|169|1|anti-sense Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|169|1|anti-sense Harlequin-int_dup77|chr1:227589916-227594859:-|1.168613593704203|0.0249115736329499|5.55|151.0|169|1|anti-sense MSMS UPN48_class_I_Rep_3 7 511.2683410644531 2 511.262413 1020.51027 NaN NaN NaN NaN NaN NaN NaN 50.249 1 53.87 53.37 54.37 3.621 0 0 0 0.40581 1 10174 10174 2.8892 0 1 57104 7983 35946 35964 65610 65610 0.0008391703075858459 YLYHWLSK 8 Unmodified _YLYHWLSK_ 0 0 0 REV__L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|143|3|anti-sense REV__L1M1_dup7736|chr13:33844419-33846897:-|1.1376321925819466|0.1701559215729743|2.74|151.0|143|3|anti-sense MSMS UPN48_class_I_Rep_1 5 555.2945556640625 2 555.292559 1108.57057 NaN NaN NaN NaN NaN NaN NaN 63.164 1 66.627 66.127 67.127 3.4625 0 0 0 0.40404 1 14197 14197 5.2307 2.2354 1 + 57105 24137 35947 35965 65611 65611 0.02062350685491765 YLYIFYFQ 8 Unmodified _YLYIFYFQ_ 0 0 0 REV__L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|89|1|anti-sense REV__L1MB7_dup12297|chrX:74228866-74230951:+|14.988924117031344|0.1993243672867383|6.23|151.0|89|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 578.3065185546875 2 578.789318 1155.56408 0.44996 0.00026043 -1.8667 -0.0010804 -1.4167 -0.00081999 578.7869165465204 70.694 0.21106 74.153 73.971 74.182 3.4598 34 21 2 0 0 0 0.72333 1 16466 16466 10.183 0.83596 1 152300 + 57106 26132 35948 35966 65612 65612 -0.0074758726586878765 YLYKYYKR 8 Unmodified _YLYKYYKR_ 0 0 0 REV__L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|10|1|sense REV__L1PA5_dup4544|chr6:88643387-88647026:+|1.3648642346477668|0.0440883441619462|4.95|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 598.8285522460938 2 598.826766 1195.63898 NaN NaN NaN NaN NaN NaN NaN 45.58 1 48.934 48.434 49.434 3.3534 0 0 0 0.40746 1 9618 9618 0.69038 0.088878 1 + 57107 29763 35949 35967 65613 65613 0.04898595265331096 YLYLHPYL 8 Unmodified _YLYLHPYL_ 0 0 0 MLT1A-int_dup348|chr13:48997791-48999610:+|1.8469377433609824|0.0416446061232851|5.47|151.0|63|3|sense MLT1A-int_dup348|chr13:48997791-48999610:+|1.8469377433609824|0.0416446061232851|5.47|151.0|63|3|sense MLT1A-int_dup348|chr13:48997791-48999610:+|1.8469377433609824|0.0416446061232851|5.47|151.0|63|3|sense MSMS UPN48_class_I_Rep_1 5 541.2871704101562 2 541.289485 1080.56442 NaN NaN NaN NaN NaN NaN NaN 63.441 1 66.899 66.399 67.399 3.4578 0 0 0 0.4032 1 14283 14283 6.3541 0 1 57108 16247 35950 35968 65614 65614 0.027358324539818568 YLYLHPYL 8 Unmodified _YLYLHPYL_ 0 0 0 MLT1A-int_dup348|chr13:48997791-48999610:+|1.8469377433609824|0.0416446061232851|5.47|151.0|63|3|sense MLT1A-int_dup348|chr13:48997791-48999610:+|1.8469377433609824|0.0416446061232851|5.47|151.0|63|3|sense MLT1A-int_dup348|chr13:48997791-48999610:+|1.8469377433609824|0.0416446061232851|5.47|151.0|63|3|sense MSMS UPN48_class_I_Rep_2 6 541.2879638671875 2 541.289485 1080.56442 NaN NaN NaN NaN NaN NaN NaN 63.475 1 66.949 66.449 67.449 3.4738 0 0 0 0.4032 1 14274 14274 6.3541 0 1 57109 16247 35950 35968 65615 65615 0.027358324539818568 YLYMLFTF 8 Unmodified _YLYMLFTF_ 0 0 0 REV__L1M5_dup12299|chr3:195324941-195325332:+|2.0503554867178777|0.0329620266705414|5.96|151.0|29|3|anti-sense REV__L1M5_dup12299|chr3:195324941-195325332:+|2.0503554867178777|0.0329620266705414|5.96|151.0|29|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 549.2727661132812 2 549.272447 1096.53034 -0.042883 -2.3555E-05 -0.59831 -0.00032864 -0.64119 -0.00035219 549.2719736513034 39.922 0.80006 43.159 42.824 43.624 3.2372 113 52 3 0 0 0 0.82752 1 8058 8058 2.5775 0 1 163340 + 57110 24612 35951 35969 65616 65616 -0.014063320292734716 YLYNKPVR 8 Unmodified _YLYNKPVR_ 0 0 0 L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|178|3|sense L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|178|3|sense L1PA6_dup150|chr1:92715489-92721678:+|2.101023537859047|0.0923784186416784|4.51|151.0|178|3|sense MSMS UPN48_class_I_Rep_1 5 526.7970581054688 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.524 1 27.09 26.59 27.59 3.5655 0 0 0 0.40746 1 2469 2469 0.69038 0 1 57111 14563 35952 35970 65617 65617 0.05773753059793307 YLYPLKRR 8 Unmodified _YLYPLKRR_ 0 0 0 ENST00000489193.1_1_3:86062314-86062485:+|nuORF ENST00000489193.1_1_3:86062314-86062485:+|nuORF ENST00000489193.1_1_3:86062314-86062485:+|nuORF MSMS UPN47_class_I_Rep_1 2 554.832763671875 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 67.323 1 70.684 70.184 71.184 3.3611 0 0 0 0.40738 1 16183 16183 0.79363 0 1 57112 7056 35953 35971 65618 65618 0.1057772122210281 YLYPPFKQ 8 Unmodified _YLYPPFKQ_ 0 0 0 L1MEd_dup7876|chr6:32824088-32824908:-|1.3964855196913917|0.4014633946672267|1.8|151.0|54|2|anti-sense L1MEd_dup7876|chr6:32824088-32824908:-|1.3964855196913917|0.4014633946672267|1.8|151.0|54|2|anti-sense L1MEd_dup7876|chr6:32824088-32824908:-|1.3964855196913917|0.4014633946672267|1.8|151.0|54|2|anti-sense MSMS UPN48_class_I_Rep_2 6 528.282958984375 2 528.28166 1054.54877 NaN NaN NaN NaN NaN NaN NaN 27.873 1 31.504 31.004 32.004 3.6311 0 0 0 0.40581 1 3758 3758 2.8892 0.31174 1 57113 13216 35954 35972 65619 65619 0.023675459369314922 YLYQKKYI 8 Unmodified _YLYQKKYI_ 0 0 0 L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense MSMS UPN46_class_I_Rep_3 1 559.8160400390625 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 82.764 1 82.764 82.264 83.264 0 0 0 0 0.38221 1 19623 19623 14.582 0 1 57114 8568 35955 35973 65620 65620 0.06307790516802925 YLYQKKYI 8 Unmodified _YLYQKKYI_ 0 0 0 L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 559.815673828125 2 559.815867 1117.61718 0.40283 0.00022551 -0.090084 -5.043E-05 0.31275 0.00017508 559.8156786736389 75.994 1.0159 79.397 78.844 79.859 3.4034 220 94 3 0 0 0 0.82752 3 18731 18694;18731;18785 14.582 2.0501 1 272630 57115 8568 35955 35973 65621;65622;65623 65622 0.06307790516802925 YLYQKKYI 8 Unmodified _YLYQKKYI_ 0 0 0 L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 559.8157348632812 2 559.815867 1117.61718 0.46427 0.00025991 -0.26431 -0.00014796 0.19997 0.00011194 559.8155677319573 76.066 0.80889 79.387 79.021 79.83 3.3216 150 80 3 0 0 0 0.82752 1 18834 18834 14.582 2.0501 1 344600 57116 8568 35955 35973 65624 65624 0.06307790516802925 YLYQKKYI 8 Unmodified _YLYQKKYI_ 0 0 0 L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense MSMS UPN47_class_I_Rep_2 3 559.816650390625 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 76.376 1 79.698 79.198 80.198 3.3216 0 0 0 0.39624 1 18905 18905 9.3474 0 1 57117 8568 35955 35973 65625 65625 0.06307790516802925 YLYQKKYI 8 Unmodified _YLYQKKYI_ 0 0 0 L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense L1M1_dup4310|chr8:67244600-67248710:+|2.5239277723840967|0.0647755981659733|5.28|150.0|104|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 559.8157958984375 2 559.815867 1117.61718 0.45997 0.0002575 -0.061686 -3.4533E-05 0.39828 0.00022297 559.8157244838847 76.403 1.0622 79.661 79.11 80.172 3.2573 245 107 3 0 0 0 0.82752 2 18955 18955;19102 14.582 2.0501 1 251710 57118 8568 35955 35973 65626;65627 65626 0.06307790516802925 YLYQLSSYV 9 Unmodified _YLYQLSSYV_ 0 0 0 REV__L1MC1_dup4653|chr5:123409991-123412037:+|1.96515311883556|0.1765361134628471|3.48|151.0|47|2|sense REV__L1MC1_dup4653|chr5:123409991-123412037:+|1.96515311883556|0.1765361134628471|3.48|151.0|47|2|sense MSMS UPN48_class_I_Rep_1 5 568.7141723632812 2 568.28714 1134.55973 NaN NaN NaN NaN NaN NaN NaN 19.195 1 22.733 22.233 23.233 3.5378 0 0 0 0.39518 1 1413 1413 1.8442 0.19162 1 + 57119 26565 35956 35974 65628 65628 -0.0021709647942316224 YLYQRWLY 8 Unmodified _YLYQRWLY_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENST00000506641.5_1_5:1318486-1326363:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MSMS UPN47_class_I_Rep_2 3 602.8093872070312 2 602.811116 1203.60768 NaN NaN NaN NaN NaN NaN NaN 37.789 1 41.177 40.677 41.677 3.3879 0 0 0 0.40625 1 7245 7245 2.3027 0 1 57120 905 35957 35975 65629 65629 0.014020222312865371 YLYRALLL 8 Unmodified _YLYRALLL_ 0 0 0 REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF MSMS UPN48_class_I_Rep_1 5 512.8124389648438 2 512.813128 1023.6117 NaN NaN NaN NaN NaN NaN NaN 67.481 1 70.933 70.433 71.433 3.4516 0 0 0 0.40625 1 15513 15513 2.3027 0 1 + 57121 18285 35958 35976 65630 65630 0.10084111724984268 YLYSLEVQL 9 Unmodified _YLYSLEVQL_ 0 0 0 ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS UPN47_class_I_Rep_2 3 564.3043823242188 2 564.30279 1126.59103 0.51004 0.00028782 1.6208 0.00091462 2.1308 0.0012024 564.8052457256566 80.904 0.24394 84.285 84.229 84.473 3.3812 39 29 2 0 0 0 0.38714 1 20143 20143 8.7454 0 1 155920 57122 4446 35959 35977 65631 65631 0.032794765546668714 YLYWYVIV 8 Unmodified _YLYWYVIV_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MSMS UPN47_class_I_Rep_3 4 559.7982177734375 2 559.799686 1117.58482 NaN NaN NaN NaN NaN NaN NaN 23.727 1 27.077 26.577 27.577 3.3509 0 0 0 0.40738 1 3067 3067 0.79363 0 1 57123 1180 35960 35978 65632 65632 0.03073003113786399 YLYYFFSSA 9 Unmodified _YLYYFFSSA_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|137|1|anti-sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|137|1|anti-sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|137|1|anti-sense MSMS UPN47_class_I_Rep_1 2 580.769287109375 2 580.768583 1159.52261 NaN NaN NaN NaN NaN NaN NaN 70.585 1 73.957 73.457 74.457 3.3713 0 0 0 0.39326 1 17161 17161 2.3027 0 1 57124 9995 35961 35979 65633 65633 -0.05076768025173806 YLYYFFSSA 9 Unmodified _YLYYFFSSA_ 0 0 0 L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|137|1|anti-sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|137|1|anti-sense L1MA6_dup664|chr2:165849601-165853262:-|3.4729827260979915|0.3084766814242496|3.49|151.0|137|1|anti-sense MSMS UPN47_class_I_Rep_2 3 580.7706298828125 2 580.768583 1159.52261 NaN NaN NaN NaN NaN NaN NaN 71.979 1 75.269 74.769 75.769 3.2899 0 0 0 0.39326 1 17621 17621 2.3027 0.4585 1 57125 9995 35961 35979 65634 65634 -0.05076768025173806 YLYYLAFL 8 Unmodified _YLYYLAFL_ 0 0 0 L1ME1_dup21247|chr11:73102058-73102536:+|1.75342923435576|0.0039321592981134|8.8|151.0|21|1|anti-sense L1ME1_dup21247|chr11:73102058-73102536:+|1.75342923435576|0.0039321592981134|8.8|151.0|21|1|anti-sense L1ME1_dup21247|chr11:73102058-73102536:+|1.75342923435576|0.0039321592981134|8.8|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_2 6 533.2847290039062 2 533.286411 1064.55827 NaN NaN NaN NaN NaN NaN NaN 81.381 1 85.037 84.537 85.537 3.6567 0 0 0 0.34139 1 19315 19315 24.21 0 1 57126 12294 35962 35980 65635 65635 0.028573142224786352 YLYYSKQST 9 Unmodified _YLYYSKQST_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 576.7822875976562 2 576.782222 1151.54989 0.44711 0.00025788 -0.11691 -6.7431E-05 0.3302 0.00019045 576.782154590911 62.068 0.89298 65.328 65.018 65.911 3.2594 129 60 3 0 0 0 0.26948 1 14636 14636 15.847 0 1 516760 57127 9337 35963 35981 65636 65636 -0.019822844848249588 YLYYSKQST 9 Unmodified _YLYYSKQST_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense MULTI-MATCH UPN47_class_I_Rep_1 2 2 576.782222 1151.54989 0.38076 0.00021962 0.010962 6.3226E-06 0.39172 0.00022594 576.7821367139659 61.852 0.70421 65.22 64.91 65.614 3.3681 -0.06536 8.7645E-05 NaN 15.847 122 52 3 NaN NaN NaN NaN 0 NaN NaN 0 368590 57128 9337 35963 35981 -0.019822844848249588 YLYYSKQST 9 Unmodified _YLYYSKQST_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 576.782222 1151.54989 0.44711 0.00025788 -0.11691 -6.7431E-05 0.3302 0.00019045 576.782154590911 62.068 0.89298 65.328 65.018 65.911 3.2594 0.042072 -5.9861E-05 NaN 15.847 129 60 3 NaN NaN NaN NaN 0 NaN NaN 0 516760 57129 9337 35963 35981 -0.019822844848249588 YLYYSKQST 9 Unmodified _YLYYSKQST_ 0 0 0 L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense L1MA2_dup1396|chr3:138582789-138586170:+|1.1938378184967433|0.0217136448447917|5.78|150.0|28|1|sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 576.782222 1151.54989 0.40084 0.0002312 -0.1212 -6.9907E-05 0.27964 0.00016129 576.7820948549676 62.142 0.79742 65.309 64.997 65.794 3.1667 0.023288 -6.4813E-05 NaN 15.847 127 54 3 NaN NaN NaN NaN 0 NaN NaN 0 394940 57130 9337 35963 35981 -0.019822844848249588 YMAAIALQN 9 Unmodified _YMAAIALQN_ 0 0 0 Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|73|1|anti-sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|73|1|anti-sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|73|1|anti-sense MSMS UPN47_class_I_Rep_2 3 497.7546691894531 2 497.754953 993.495352 NaN NaN NaN NaN NaN NaN NaN 14.45 1 17.837 17.337 18.337 3.3871 0 0 0 0.4029 1 571 571 0 0 1 57131 33114 35964 35982 65637 65637 -0.0016557483724000122 YMAAIALQN 9 Unmodified _YMAAIALQN_ 0 0 0 Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|73|1|anti-sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|73|1|anti-sense Tigger1_dup497|chr1:117452322-117454228:+|1.5298225386994284|0.0966768340303349|3.98|151.0|73|1|anti-sense MSMS UPN48_class_I_Rep_1 5 497.7546081542969 2 497.754953 993.495352 NaN NaN NaN NaN NaN NaN NaN 18.264 1 21.795 21.295 22.295 3.5313 0 0 0 0.4029 1 1202 1202 0 0 1 57132 33114 35964 35982 65638 65638 -0.0016557483724000122 YMDDYIFTY 9 Unmodified _YMDDYIFTY_ 0 0 0 ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E MULTI-MSMS UPN47_class_I_Rep_1 2 616.25537109375 2 615.754815 1229.49508 0.43878 0.00027018 -0.4552 -0.00028029 -0.016413 -1.0106E-05 615.7544402856646 77.108 0.36886 80.523 80.338 80.707 3.4149 47 29 2 0 0 0 0.23293 1 19127 19127 18.146 0 1 96221 57133 3764 35965 35983 65639 65639 -0.110490393477221 YMDDYIFTY 9 Unmodified _YMDDYIFTY_ 0 0 0 ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E MULTI-MATCH UPN47_class_I_Rep_2 3 2 615.754815 1229.49508 0.47513 0.00029256 -0.22038 -0.0001357 0.25475 0.00015686 615.7546632910058 77.343 0.34793 80.675 80.395 80.743 3.3315 0.087563 -8.0192E-05 NaN 18.146 53 35 2 NaN NaN NaN NaN 0 NaN NaN 0 89359 57134 3764 35965 35983 -0.110490393477221 YMDDYIFTY 9 Unmodified _YMDDYIFTY_ 0 0 0 ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E MULTI-MATCH UPN47_class_I_Rep_3 4 2 615.754815 1229.49508 0.46943 0.00028906 0.12372 7.6183E-05 0.59316 0.00036524 615.7547775912858 77.295 0.41203 80.564 80.38 80.792 3.269 -0.023196 0.00034357 NaN 18.146 49 41 2 NaN NaN NaN NaN 0 NaN NaN 0 94071 57135 3764 35965 35983 -0.110490393477221 YMDELEQGD 9 Unmodified _YMDELEQGD_ 0 0 0 ENSG00000133101|ENST00000255465|CCNA1;nc|ENSG00000133101|P78396-2|CCNA1;nc|ENSG00000133101|P78396|CCNA1 ENSG00000133101|ENST00000255465|CCNA1 ENSG00000133101|ENST00000255465|CCNA1 MSMS UPN46_class_I_Rep_3 1 550.2603149414062 2 550.216054 1098.41756 NaN NaN NaN NaN NaN NaN NaN 31.373 1 31.373 30.873 31.873 0 0 0 0 0.39518 1 5233 5233 1.8442 0.51471 1 57136 2790 35966 35984 65640 65640 -0.12771677283922145 YMDHYHIN 8 Unmodified _YMDHYHIN_ 0 0 0 ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000375204.2_1_9:100053158-100058044:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF ENST00000375206.6_1_9:100053158-100139173:+|nuORF MSMS UPN46_class_I_Rep_3 1 546.7495727539062 2 546.732009 1091.44946 NaN NaN NaN NaN NaN NaN NaN 119.5 1 119.5 119 120 0 0 0 0 0.40604 1 29703 29703 2.5775 0 1 57137 6441 35967 35985 65641 65641 -0.09260220019450571 YMDYRGDTFWP 11 Unmodified _YMDYRGDTFWP_ 0 0 0 ENST00000485113.5_1_1:146742566-146742704:+|nuORF ENST00000485113.5_1_1:146742566-146742704:+|nuORF ENST00000485113.5_1_1:146742566-146742704:+|nuORF MSMS UPN48_class_I_Rep_3 7 484.20660400390625 3 484.208055 1449.60234 NaN NaN NaN NaN NaN NaN NaN 18.003 1 21.567 21.067 22.067 3.5637 0 0 0 0.38417 1 1117 1117 1.2148 0.4383 1 57138 7029 35968 35986 65642 65642 -0.10448069413519079 YMENPSCSGYT 11 Unmodified _YMENPSCSGYT_ 0 0 0 REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|152|3|anti-sense REV__Tigger1_dup730|chr1:197562264-197564657:+|1.010531641885657|0.0651146230297729|3.96|150.0|152|3|anti-sense MSMS UPN47_class_I_Rep_1 2 626.6902465820312 2 626.236464 1250.45837 NaN NaN NaN NaN NaN NaN NaN 27.589 1 31.355 30.855 31.855 3.7662 0 0 0 0.38417 1 4128 4128 1.1933 0.50296 1 + 57139 32519 35969 35987 65643 65643 -0.15683659235946834 YMFFKYWF 8 Unmodified _YMFFKYWF_ 0 0 0 REV__L1ME1_dup16305|chr9:40095630-40096090:+|1.5653333276268018|0.1225934810183764|3.67|150.0|31|2|anti-sense REV__L1ME1_dup16305|chr9:40095630-40096090:+|1.5653333276268018|0.1225934810183764|3.67|150.0|31|2|anti-sense MSMS UPN48_class_I_Rep_3 7 616.2835083007812 2 616.285889 1230.55722 NaN NaN NaN NaN NaN NaN NaN 31.276 1 34.977 34.477 35.477 3.7015 0 0 0 0.40738 1 4607 4607 0.79363 0.10326 1 + 57140 27633 35970 35988 65644 65644 -0.04883223418073612 YMFLIIISF 9 Unmodified _YMFLIIISF_ 0 0 0 L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|122|3|anti-sense L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|122|3|anti-sense L1MB7_dup3180|chr2:172576226-172578242:-|2.298047480066371|0.0214845516852529|6.74|151.0|122|3|anti-sense MSMS UPN47_class_I_Rep_1 2 573.8175659179688 2 573.817021 1145.61949 NaN NaN NaN NaN NaN NaN NaN 116.76 1 120.37 119.87 120.87 3.6036 0 0 0 0.40038 1 28927 28927 0.6015 0 1 57141 10822 35971 35989 65645 65645 0.05250502930266521 YMFMSYRE 8 Unmodified _YMFMSYRE_ 0 0 0 REV__L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|14|1|sense REV__L1MC2_dup5426|chr17:8936664-8937834:-|2.795329816269741|0.0298562267792538|6.55|151.0|14|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 564.275146484375 2 563.738445 1125.46234 0.43253 0.00024383 -2.458 -0.0013857 -2.0255 -0.0011419 564.237809200108 114.34 0.024345 117.97 117.95 117.98 3.6301 4 2 2 0 0 0 0.82752 1 27793 27793 0.79363 0 1 23522 + 57142 26547 35972 35990 65646 65646 -0.09537524951565501 YMFNVNEVL 9 Unmodified _YMFNVNEVL_ 0 0 0 REV__L1MB4_dup8121|chr18:63301014-63301404:+|1.4963593131237278|0.0156139254505326|6.58|151.0|11|2|sense REV__L1MB4_dup8121|chr18:63301014-63301404:+|1.4963593131237278|0.0156139254505326|6.58|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 564.7718505859375 2 564.773342 1127.53213 NaN NaN NaN NaN NaN NaN NaN 32.441 1 36.13 35.63 36.63 3.6896 0 0 0 0.37891 1 4933 4933 5.7319 2.1354 1 + 57143 26026 35973 35991 65647 65647 -0.02653323011327302 YMFWVKIK 8 Unmodified _YMFWVKIK_ 0 0 0 Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|7|1|sense Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|7|1|sense Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|7|1|sense MSMS UPN48_class_I_Rep_1 5 557.8099975585938 2 557.809531 1113.60451 NaN NaN NaN NaN NaN NaN NaN 29.128 1 32.678 32.178 33.178 3.5499 0 0 0 0.40738 1 4002 4002 0.79363 0 1 57144 33231 35974 35992 65648 65648 0.05225055852906735 YMFWYCLCK 9 Unmodified _YMFWYCLCK_ 0 0 0 REV__Tigger3b_dup5732|chr17:42266967-42267676:+|2.31987037960347|0.1754481533204401|3.72|151.0|26|3|sense REV__Tigger3b_dup5732|chr17:42266967-42267676:+|2.31987037960347|0.1754481533204401|3.72|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 628.7695922851562 2 628.768691 1255.52283 NaN NaN NaN NaN NaN NaN NaN 43.542 1 46.9 46.4 47.4 3.358 0 0 0 0.40038 1 8992 8992 0.6015 0 1 + 57145 32760 35975 35993 65649 65649 -0.09471130892848123 YMFYKYFL 8 Unmodified _YMFYKYFL_ 0 0 0 L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|123|3|anti-sense;L1ME1_dup1834|chr1:180290944-180293294:-|2.093489791057158|0.4292394122241701|2.29|151.0|124|2|anti-sense L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|123|3|anti-sense L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|123|3|anti-sense MSMS UPN48_class_I_Rep_1 5 587.7860107421875 2 587.785721 1173.55689 NaN NaN NaN NaN NaN NaN NaN 111.32 1 114.95 114.45 115.45 3.6326 0 0 0 0.40738 1 27006 27006 0.79363 0 1 57146 12266 35976 35994 65650 65650 -0.022946431379295973 YMHAHTQT 8 Unmodified _YMHAHTQT_ 0 0 0 REV__MLT2C1_dup342|chr2:216196456-216196888:-|1.1348402076242536|0.1217815706707912|3.22|151.0|15|3|sense REV__MLT2C1_dup342|chr2:216196456-216196888:-|1.1348402076242536|0.1217815706707912|3.22|151.0|15|3|sense MSMS UPN47_class_I_Rep_1 2 494.718505859375 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 119.52 1 123.12 122.62 123.62 3.6036 0 0 0 0.40738 1 29702 29702 0.79363 0 1 + 57147 31835 35977 35995 65651 65651 -0.07096489190951161 YMHDHQIW 8 Unmodified _YMHDHQIW_ 0 0 0 REV__nc|ENSG00000138399|Q53R41-2|FASTKD1 REV__nc|ENSG00000138399|Q53R41-2|FASTKD1 MULTI-MSMS UPN47_class_I_Rep_2 3 565.2484741210938 2 565.247826 1128.4811 0.43124 0.00024376 1.6814 0.00095042 2.1127 0.0011942 565.2488666671674 72.615 0.45604 75.912 75.656 76.112 3.2971 55 41 2 0 0 0 0.82752 1 17793 17793 2.0598 0.40713 1 88203 + 57148 19273 35978 35996 65652 65652 -0.07800227265511239 YMHIIYIY 8 Unmodified _YMHIIYIY_ 0 0 0 L1ME4b_dup18106|chr16:23916445-23916766:-|1.4365071337252082|0.0053020198316422|8.08|151.0|22|3|anti-sense L1ME4b_dup18106|chr16:23916445-23916766:-|1.4365071337252082|0.0053020198316422|8.08|151.0|22|3|anti-sense L1ME4b_dup18106|chr16:23916445-23916766:-|1.4365071337252082|0.0053020198316422|8.08|151.0|22|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 557.79248046875 2 558.283346 1114.55214 0.37089 0.00020706 1.8078 0.0010093 2.1787 0.0012163 558.2840241997799 65.406 0.34948 68.762 68.604 68.953 3.3557 22 17 2 0 0 0 0.72333 1 15614 15614 32.454 0 1 68241 57149 12903 35979 35997 65653 65653 -0.0005552728071052115 YMHLYLFF 8 Unmodified _YMHLYLFF_ 0 0 0 REV__L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|55|2|anti-sense REV__L1MC4_dup7298|chr5:14194783-14195850:-|1.0501603337243102|0.019011783836657|5.79|151.0|55|2|anti-sense MSMS UPN48_class_I_Rep_3 7 567.2776489257812 2 567.278063 1132.54157 NaN NaN NaN NaN NaN NaN NaN 33.435 1 37.114 36.614 37.614 3.6797 0 0 0 0.40738 1 5198 5198 0.79363 0 1 + 57150 26941 35980 35998 65654 65654 -0.01939509935141359 YMHVMSYW 8 Unmodified _YMHVMSYW_ 0 0 0 REV__L1PA10_dup5530|chr13:24463515-24465781:+|4.722842570092662|0.0529703610548575|6.48|151.0|106|2|anti-sense REV__L1PA10_dup5530|chr13:24463515-24465781:+|4.722842570092662|0.0529703610548575|6.48|151.0|106|2|anti-sense MSMS UPN46_class_I_Rep_3 1 558.7227783203125 2 558.735706 1115.45686 NaN NaN NaN NaN NaN NaN NaN 112.88 1 112.88 112.38 113.38 0 0 0 0 0.40738 1 27875 27875 0.79363 0 1 + 57151 28973 35981 35999 65655 65655 -0.09625203743394195 YMHVVHLNC 9 Unmodified _YMHVVHLNC_ 0 0 0 REV__L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|167|3|sense REV__L1PA6_dup3446|chr9:121099027-121104533:+|6.120724113140594|0.15023023044662|5.35|151.0|167|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 558.2594604492188 2 558.259879 1114.50521 -0.025627 -1.4306E-05 -0.7521 -0.00041987 -0.77773 -0.00043417 558.2594857239379 40.405 0.50436 43.642 43.344 43.848 3.2372 34 29 2 0 0 0 0.46434 1 8089 8089 4.3292 0 1 47122 + 57152 29880 35982 36000 65656 65656 -0.047467101034953885 YMIFCKRYN 9 Unmodified _YMIFCKRYN_ 0 0 0 L1MC1_dup8508|chr10:26571685-26572118:-|1.2829762125554969|0.0182266407362261|6.14|151.0|1|1|sense L1MC1_dup8508|chr10:26571685-26572118:-|1.2829762125554969|0.0182266407362261|6.14|151.0|1|1|sense L1MC1_dup8508|chr10:26571685-26572118:-|1.2829762125554969|0.0182266407362261|6.14|151.0|1|1|sense MSMS UPN47_class_I_Rep_2 3 619.2971801757812 2 619.296462 1236.57837 NaN NaN NaN NaN NaN NaN NaN 50.304 1 53.647 53.147 54.147 3.3431 0 0 0 0.39518 1 11045 11045 1.8442 0 1 57153 11199 35983 36001 65657 65657 -0.030455813808657695 YMIFYNYL 8 Unmodified _YMIFYNYL_ 0 0 0 REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|17|3|sense REV__MER1A_dup2246|chr12:11853885-11854408:-|3.044125670055404|0.039856182034697|6.26|151.0|17|3|sense MSMS UPN48_class_I_Rep_1 5 563.7666625976562 2 563.767529 1125.5205 NaN NaN NaN NaN NaN NaN NaN 112.47 1 116.1 115.6 116.6 3.6321 0 0 0 0.40738 1 27295 27295 0.79363 0 1 + 57154 31123 35984 36002 65658 65658 -0.037235200346685815 YMIHKVLVPWF 11 Unmodified _YMIHKVLVPWF_ 0 0 0 L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|203|1|anti-sense L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|203|1|anti-sense L1P2_dup1443|chr16:72324393-72329827:+|3.259580241571618|0.171779987476476|4.25|151.0|203|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 478.5987548828125 3 478.265176 1431.7737 0.17671 8.4515E-05 -0.91109 -0.00043574 -0.73438 -0.00035123 478.2646453509471 40.108 0.66857 43.849 43.654 44.322 3.7413 86 73 2 0 0 0 22.551 1 7168 7168 1.1098 0.41209 1 149340 57155 13485 35985 36003 65659 65659 0.0750833241561395 YMKANFINV 9 Unmodified _YMKANFINV_ 0 0 0 Tigger1_dup10580|chr16:31366071-31366519:+|1.4502257556075|0.2051266692376717|2.82|151.0|3|1|sense Tigger1_dup10580|chr16:31366071-31366519:+|1.4502257556075|0.2051266692376717|2.82|151.0|3|1|sense Tigger1_dup10580|chr16:31366071-31366519:+|1.4502257556075|0.2051266692376717|2.82|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.2837524414062 2 550.283877 1098.5532 0.36981 0.0002035 -0.098353 -5.4122E-05 0.27146 0.00014938 550.2836247382061 54.847 0.68874 58.349 57.902 58.591 3.5014 78 41 2 0 0 0 0.41259 1 12319 12319 7.2892 0 1 143570 57156 32987 35986 36004 65660 65660 0.007866870882025978 YMKKILRGK 9 Unmodified _YMKKILRGK_ 0 0 0 L1PB1_dup7377|chrX:1531798-1532244:+|6.087751182253578|0.0081524209813337|9.54|151.0|17|3|sense L1PB1_dup7377|chrX:1531798-1532244:+|6.087751182253578|0.0081524209813337|9.54|151.0|17|3|sense L1PB1_dup7377|chrX:1531798-1532244:+|6.087751182253578|0.0081524209813337|9.54|151.0|17|3|sense MSMS UPN48_class_I_Rep_2 6 568.755615234375 2 568.852261 1135.68997 NaN NaN NaN NaN NaN NaN NaN 23.674 1 27.314 26.814 27.814 3.6397 0 0 0 0.4007 1 2621 2621 0.52476 0 1 57157 15198 35987 36005 65661 65661 0.12755221038560194 YMKVIKVI 8 Unmodified _YMKVIKVI_ 0 0 0 L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|17|1|sense L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|17|1|sense L1M5_dup34878|chr10:68017789-68018986:+|1.6179809094881927|0.1592971095868474|3.34|151.0|17|1|sense MSMS UPN48_class_I_Rep_1 5 497.311767578125 2 497.311906 992.60926 NaN NaN NaN NaN NaN NaN NaN 83.642 1 87.229 86.729 87.729 3.5871 0 0 0 0.40738 1 20007 20007 0.79363 0 1 57158 9146 35988 36006 65662 65662 0.11265939995678309 YMLERQKS 8 Unmodified _YMLERQKS_ 0 0 0 REV__L1ME3A_dup7727|chr8:100289078-100290117:+|1.298862681767315|0.1237500123484882|3.39|151.0|12|1|sense REV__L1ME3A_dup7727|chr8:100289078-100290117:+|1.298862681767315|0.1237500123484882|3.39|151.0|12|1|sense MSMS UPN47_class_I_Rep_2 3 527.7711791992188 2 527.771134 1053.52771 NaN NaN NaN NaN NaN NaN NaN 113.67 1 117.18 116.68 117.68 3.5109 0 0 0 0.40604 1 27657 27657 2.5775 0 1 + 57159 28033 35989 36007 65663 65663 0.003092125657985889 YMLFSIWW 8 Unmodified _YMLFSIWW_ 0 0 0 REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|78|1|anti-sense REV__L1PA10_dup147|chr1:85788391-85790539:-|2.709191813715369|0.0145785085927974|7.54|150.0|78|1|anti-sense MSMS UPN47_class_I_Rep_3 4 573.2772827148438 2 573.278063 1144.54157 NaN NaN NaN NaN NaN NaN NaN 18.705 1 22.059 21.559 22.559 3.3545 0 0 0 0.40738 1 1609 1609 0.79363 0 1 + 57160 28838 35990 36008 65664 65664 -0.024915099351346726 YMLGLASPI 9 Unmodified _YMLGLASPI_ 0 0 0 REV__ENST00000599564.5_2_19:35517288-35517357:+|nuORF REV__ENST00000599564.5_2_19:35517288-35517357:+|nuORF MSMS UPN47_class_I_Rep_1 2 482.7623596191406 2 482.762246 963.50994 NaN NaN NaN NaN NaN NaN NaN 82.714 1 86.252 85.752 86.752 3.5386 0 0 0 0.36505 1 20671 20671 7.2892 0 1 + 57161 23208 35991 36009 65665 65665 0.026724973109025996 YMLHWQVTCK 10 Unmodified _YMLHWQVTCK_ 0 0 0 REV__L1MB5_dup7216|chr15:42956879-42957531:+|1.6490962508557858|0.2453940608117124|2.75|151.0|27|1|anti-sense REV__L1MB5_dup7216|chr15:42956879-42957531:+|1.6490962508557858|0.2453940608117124|2.75|151.0|27|1|anti-sense MSMS UPN48_class_I_Rep_1 5 436.8791198730469 3 436.879104 1307.61548 NaN NaN NaN NaN NaN NaN NaN 24.03 1 27.595 27.095 28.095 3.5655 0 0 0 0.53105 1 2590 2590 0.62683 0.12087 1 + 57162 26095 35992 36010 65666 65666 -0.02601909835107108 YMLIDLYE 8 Unmodified _YMLIDLYE_ 0 0 0 REV__L1M5_dup3395|chr1:212353474-212353843:-|1.264984366344628|0.1155981259432803|3.45|151.0|13|3|sense REV__L1M5_dup3395|chr1:212353474-212353843:-|1.264984366344628|0.1155981259432803|3.45|151.0|13|3|sense MSMS UPN48_class_I_Rep_1 5 530.734375 2 530.256994 1058.49943 NaN NaN NaN NaN NaN NaN NaN 31.746 1 35.28 34.78 35.78 3.5342 0 0 0 0.40738 1 4734 4734 0.79363 0 1 + 57163 24659 35993 36011 65667 65667 -0.027475301341610248 YMLLFPPFL 9 Unmodified _YMLLFPPFL_ 0 0 0 L1MEg_dup1325|chr2:32457056-32457796:-|2.060498409561472|0.0187634273669069|6.78|151.0|45|2|anti-sense L1MEg_dup1325|chr2:32457056-32457796:-|2.060498409561472|0.0187634273669069|6.78|151.0|45|2|anti-sense L1MEg_dup1325|chr2:32457056-32457796:-|2.060498409561472|0.0187634273669069|6.78|151.0|45|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 570.8121337890625 2 570.811739 1139.60893 0.38051 0.0002172 -0.32844 -0.00018748 0.05207 2.9722E-05 570.8115708665905 42.954 0.70649 46.596 46.324 47.03 3.6415 111 58 2 0 0 0 0.48414 1 7883 7883 2.3027 0 1 265320 57164 13365 35994 36012 65668 65668 0.044705202758223095 YMLMPHAEM 9 Unmodified _YMLMPHAEM_ 0 0 0 REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|133|3|sense REV__L1PB1_dup5449|chr6:144669991-144674554:-|1.174922806995638|0.0400191203370077|4.88|151.0|133|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 561.7417602539062 2 561.742673 1121.47079 0.51551 0.00028958 -1.035 -0.00058141 -0.5195 -0.00029183 561.7420633891413 30.298 0.50877 33.84 33.633 34.142 3.542 71 55 2 0 0 0 0.48414 1 4297 4297 2.3027 0.4585 1 85957 + 57165 30443 35995 36013 65669 65669 -0.08508294306602693 YMLRGRCPVL 10 Unmodified _YMLRGRCPVL_ 0 0 0 L1PA16_dup4379|chr5:39172464-39174294:-|1.7718282625626998|0.0520169890088275|5.09|151.0|90|2|anti-sense L1PA16_dup4379|chr5:39172464-39174294:-|1.7718282625626998|0.0520169890088275|5.09|151.0|90|2|anti-sense L1PA16_dup4379|chr5:39172464-39174294:-|1.7718282625626998|0.0520169890088275|5.09|151.0|90|2|anti-sense MSMS UPN46_class_I_Rep_3 1 604.3235473632812 2 604.325553 1206.63655 NaN NaN NaN NaN NaN NaN NaN 70.424 1 70.424 69.924 70.924 0 0 0 0 0.53105 1 16183 16183 1.4819 0.28856 1 57166 14087 35996 36014 65670 65670 0.0415010026440541 YMNNLITV 8 Unmodified _YMNNLITV_ 0 0 0 REV__L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|92|3|sense REV__L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|92|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 484.2486877441406 2 484.249503 966.484453 0.21539 0.0001043 -0.26655 -0.00012908 -0.051156 -2.4772E-05 484.2492014926605 73.493 0.69897 76.798 76.398 77.097 3.3048 84 57 2 0 0 0 0.82752 1 18066 18066 18.135 0 1 98573 + 57167 25434 35997 36015 65671 65671 -0.00012977211520137644 YMNWYIPW 8 Unmodified _YMNWYIPW_ 0 0 0 L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|41|2|sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|41|2|sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|41|2|sense MSMS UPN47_class_I_Rep_1 2 586.7644653320312 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 23.913 1 27.643 27.143 28.143 3.7298 0 0 0 0.40746 1 3037 3037 0.69038 0.088878 1 57168 13136 35998 36016 65672 65672 -0.06280984457566774 YMNWYIPW 8 Unmodified _YMNWYIPW_ 0 0 0 L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|41|2|sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|41|2|sense L1MEc_dup7480|chr6:143979294-143980877:-|3.2740679291336185|0.0502881555519714|6.02|151.0|41|2|sense MSMS UPN47_class_I_Rep_3 4 586.765380859375 2 586.76532 1171.51609 NaN NaN NaN NaN NaN NaN NaN 19.971 1 23.322 22.822 23.822 3.3514 0 0 0 0.40604 1 1972 1972 2.5775 0.27475 1 57169 13136 35998 36016 65673 65673 -0.06280984457566774 YMPLFFLP 8 Unmodified _YMPLFFLP_ 0 0 0 L1MC4_dup13645|chrX:2732638-2732907:-|3.2756390107594155|0.1631389791850898|4.33|151.0|11|3|anti-sense L1MC4_dup13645|chrX:2732638-2732907:-|3.2756390107594155|0.1631389791850898|4.33|151.0|11|3|anti-sense L1MC4_dup13645|chrX:2732638-2732907:-|3.2756390107594155|0.1631389791850898|4.33|151.0|11|3|anti-sense MSMS UPN47_class_I_Rep_2 3 514.2702026367188 2 514.269707 1026.52486 NaN NaN NaN NaN NaN NaN NaN 28.097 1 31.596 31.096 32.096 3.4986 0 0 0 0.40738 1 4313 4313 0.79363 0 1 57170 11402 35999 36017 65674 65674 0.012659891789098765 YMPYRQRR 8 Unmodified _YMPYRQRR_ 0 0 0 REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|81|2|sense REV__L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|81|2|sense MSMS UPN48_class_I_Rep_3 7 585.3018798828125 2 585.303467 1168.59238 NaN NaN NaN NaN NaN NaN NaN 30.028 1 33.756 33.256 34.256 3.7286 0 0 0 0.40746 1 4282 4282 0.69038 0.088878 1 + 57171 30605 36000 36018 65675 65675 0.014828321624236196 YMQIKIDNL 9 Unmodified _YMQIKIDNL_ 0 0 0 REV__ENSG00000260314|ENST00000569591|MRC1 REV__ENSG00000260314|ENST00000569591|MRC1 MSMS UPN47_class_I_Rep_1 2 569.3045043945312 2 569.302267 1136.58998 NaN NaN NaN NaN NaN NaN NaN 31.333 1 35.062 34.562 35.562 3.7293 0 0 0 0.38916 1 5243 5243 3.2813 0 1 + 57172 21394 36001 36019 65676 65676 0.0271493891409591 YMQKRPLIKFN 11 Unmodified _YMQKRPLIKFN_ 0 0 0 L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|96|2|sense;L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|35|2|sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|96|2|sense L1PA8_dup6127|chr12:46586467-46591710:-|1.9554979469892328|0.0267656607973996|6.19|151.0|96|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.9388122558594 3 479.939352 1436.79623 -0.38367 -0.00018414 -0.57917 -0.00027797 -0.96284 -0.00046211 479.93915602004677 12.586 0.39384 16.036 15.974 16.368 3.45 90 42 3 0 0 0 0.68081 1 126 126 0.45452 0.046251 1 90973 57173 14686 36002 36020 65677 65677 0.09529931813221992 YMQPTAPRF 9 Unmodified _YMQPTAPRF_ 0 0 0 L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|31|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|31|2|sense L1M2_dup4236|chr7:156705575-156708111:+|1.3828044347157389|0.039243908811416|5.14|151.0|31|2|sense MSMS UPN48_class_I_Rep_3 7 555.7719116210938 2 555.773677 1109.5328 NaN NaN NaN NaN NaN NaN NaN 74.8 1 78.366 77.866 78.866 3.5659 0 0 0 0.38784 1 17538 17538 3.5965 0 1 57174 8688 36003 36021 65678 65678 -0.017584835716206726 YMTANIIL 8 Unmodified _YMTANIIL_ 0 0 0 L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 469.75408935546875 2 469.754421 937.494289 0.098643 4.6338E-05 -0.19387 -9.1071E-05 -0.095226 -4.4733E-05 469.75426379932225 82.331 0.51376 85.907 85.599 86.113 3.5753 82 63 2 0 0 0 0.82752 1 19673 19673 23.148 2.2772 1 137770 57175 13522 36004 36022 65679 65679 0.02304210793886341 YMTANIIL 8 Unmodified _YMTANIIL_ 0 0 0 L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 469.754421 937.494289 0.2022 9.4986E-05 -0.2271 -0.00010668 -0.024901 -1.1697E-05 469.75422043990335 82.182 0.62759 85.851 85.637 86.265 3.669 0.007737 5.0932E-05 NaN 23.148 109 80 2 NaN NaN NaN NaN 0 NaN NaN 0 181020 57176 13522 36004 36022 0.02304210793886341 YMTANIIL 8 Unmodified _YMTANIIL_ 0 0 0 L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense L1P3_dup150|chr1:198192572-198194137:+|1.2073125488680216|0.0432077515148003|4.8|151.0|13|1|sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 469.754421 937.494289 0.23373 0.0001098 -0.8029 -0.00037717 -0.56916 -0.00026737 469.7541666453688 82.087 0.22299 85.772 85.58 85.803 3.685 -0.071357 -0.00049003 NaN 23.148 34 28 2 NaN NaN NaN NaN 0 NaN NaN 0 118920 57177 13522 36004 36022 0.02304210793886341 YMTCIYVYKI 10 Unmodified _YMTCIYVYKI_ 0 0 0 REV__L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|52|3|anti-sense REV__L1MC4_dup5269|chr3:142525996-142526783:-|1.3057530807458733|0.0407638490168967|5.0|151.0|52|3|anti-sense MSMS UPN48_class_I_Rep_1 5 432.8851318359375 3 432.883744 1295.6294 NaN NaN NaN NaN NaN NaN NaN 71.894 1 75.36 74.86 75.86 3.466 0 0 0 0.53105 1 16842 16842 0.62683 0.17231 1 + 57178 26924 36005 36023 65680 65680 -0.0065867712667113665 YMVKGMGPV 9 Unmodified _YMVKGMGPV_ 0 0 0 L1PA15_dup8061|chr20:38079271-38080519:-|3.2971021240888296|0.2718558603357291|3.6|151.0|83|3|anti-sense L1PA15_dup8061|chr20:38079271-38080519:-|3.2971021240888296|0.2718558603357291|3.6|151.0|83|3|anti-sense L1PA15_dup8061|chr20:38079271-38080519:-|3.2971021240888296|0.2718558603357291|3.6|151.0|83|3|anti-sense MSMS UPN48_class_I_Rep_2 6 490.92327880859375 2 491.248449 980.482345 NaN NaN NaN NaN NaN NaN NaN 76.244 1 79.846 79.346 80.346 3.6011 0 0 0 0.39326 1 17999 17999 2.3027 1.5091 1 57179 13990 36006 36024 65681 65681 -0.008677292209426923 YMVLSLFIA 9 Unmodified _YMVLSLFIA_ 0 0 0 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MULTI-MSMS UPN47_class_I_Rep_2 3 528.7928466796875 2 528.793546 1055.57254 -0.20856 -0.00011028 0.025304 1.338E-05 -0.18325 -9.6903E-05 528.7934684339307 30.977 0.56867 34.459 34.229 34.798 3.4821 75 47 2 0 0 0 0.23311 1 5150 5150 18.135 0 1 89271 57180 1355 36007 36025 65682 65682 0.046976433791314776 YMWSVIYR 8 Unmodified _YMWSVIYR_ 0 0 0 Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|32|1|anti-sense Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|32|1|anti-sense Tigger1_dup11868|chr21:33275456-33276271:-|1.6746697384817577|0.1011512962890217|4.05|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_1 5 559.2800903320312 2 559.278595 1116.54264 NaN NaN NaN NaN NaN NaN NaN 42.472 1 45.98 45.48 46.48 3.5079 0 0 0 0.40643 1 7859 7859 2.0598 0 1 57181 33021 36008 36026 65683 65683 -0.010972955662282402 YMYFLLIE 8 Unmodified _YMYFLLIE_ 0 0 0 REV__L1MB7_dup18239|chr15:64526090-64526606:-|1.721999126472893|0.0111959073334809|7.26|150.0|22|1|anti-sense REV__L1MB7_dup18239|chr15:64526090-64526606:-|1.721999126472893|0.0111959073334809|7.26|150.0|22|1|anti-sense MSMS UPN47_class_I_Rep_1 2 546.3140869140625 2 546.277729 1090.54091 NaN NaN NaN NaN NaN NaN NaN 40.26 1 43.926 43.426 44.426 3.6668 0 0 0 0.40581 1 7963 7963 2.8892 0 1 + 57182 26179 36009 36027 65684 65684 -0.0007434937485868431 YMYFVRFRHTY 11 Unmodified _YMYFVRFRHTY_ 0 0 0 L1M5_dup54397|chr22:49578046-49578921:-|1.3214349773344751|0.0216841715273686|5.93|146.0|34|1|anti-sense L1M5_dup54397|chr22:49578046-49578921:-|1.3214349773344751|0.0216841715273686|5.93|146.0|34|1|anti-sense L1M5_dup54397|chr22:49578046-49578921:-|1.3214349773344751|0.0216841715273686|5.93|146.0|34|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 528.7588500976562 3 528.258973 1581.75509 0.063692 3.3646E-05 2.3704 0.0012522 2.4341 0.0012858 528.5949847087169 29.591 0.35386 29.591 29.375 29.729 0 69 31 3 0 0 0 0.67356 1 4747 4747 1.1098 0.096179 1 87217 57183 9201 36010 36028 65685 65685 -0.012518292262257091 YMYIFFIQ 8 Unmodified _YMYIFFIQ_ 0 0 0 L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|114|2|anti-sense;L1PA10_dup6034|chr15:56112413-56113678:+|1.164299673152568|0.0364908499298863|5.0|151.0|59|2|anti-sense L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|114|2|anti-sense L1PA8_dup628|chr2:24129803-24132464:-|1.469390351671786|0.2641170828681129|2.48|150.0|114|2|anti-sense MSMS UPN47_class_I_Rep_1 2 562.7783813476562 2 562.777896 1123.54124 NaN NaN NaN NaN NaN NaN NaN 26.432 1 30.195 29.695 30.695 3.7624 0 0 0 0.40738 1 3780 3780 0.79363 0 1 57184 13615 36011 36029 65686 65686 -0.015589296549705978 YMYIHLIY 8 Unmodified _YMYIHLIY_ 0 0 0 REV__L1M2_dup19|chr1:28004445-28005431:+|1.2059678155397415|0.1157227246434604|3.38|151.0|2|1|sense REV__L1M2_dup19|chr1:28004445-28005431:+|1.2059678155397415|0.1157227246434604|3.38|151.0|2|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 558.282470703125 2 558.283346 1114.55214 0.42271 0.00023599 0.5295 0.00029561 0.95221 0.0005316 558.2833613743361 71.594 0.52677 74.884 74.666 75.193 3.2899 63 42 2 0 0 0 0.82752 1 17559 17559 24.21 0 1 84195 + 57185 24184 36012 36030 65687 65687 -0.0005552728068778379 YMYIKDKY 8 Unmodified _YMYIKDKY_ 0 0 0 REV__nc|ENSG00000088812|O75882-3|ATRN REV__nc|ENSG00000088812|O75882-3|ATRN MSMS UPN48_class_I_Rep_1 5 562.27783203125 2 562.27826 1122.54197 NaN NaN NaN NaN NaN NaN NaN 23.152 1 26.712 26.212 27.212 3.5605 0 0 0 0.40738 1 2369 2369 0.79363 0 1 + 57186 17993 36013 36031 65688 65688 -0.01440135005918819 YMYKRKRS 8 Unmodified _YMYKRKRS_ 0 0 0 L1MB1_dup2437|chr7:77319074-77320047:+|1.594983355448292|0.4570739651153465|1.8|151.0|25|3|sense L1MB1_dup2437|chr7:77319074-77320047:+|1.594983355448292|0.4570739651153465|1.8|151.0|25|3|sense L1MB1_dup2437|chr7:77319074-77320047:+|1.594983355448292|0.4570739651153465|1.8|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 566.6412353515625 2 566.308218 1130.60188 NaN NaN NaN NaN NaN NaN NaN 99.351 1 103.11 102.61 103.61 3.7575 0 0 0 0.40738 1 23594 23594 0.79363 0.10326 1 57187 10169 36014 36032 65689 65689 0.041806004479667536 YMYTYSIVY 9 Unmodified _YMYTYSIVY_ 0 0 0 L1MB5_dup4060|chr9:96405579-96406154:+|1.2883220922350778|0.0299187480029487|5.43|151.0|30|1|anti-sense L1MB5_dup4060|chr9:96405579-96406154:+|1.2883220922350778|0.0299187480029487|5.43|151.0|30|1|anti-sense L1MB5_dup4060|chr9:96405579-96406154:+|1.2883220922350778|0.0299187480029487|5.43|151.0|30|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 602.2789306640625 2 601.775551 1201.53655 0.51649 0.00031081 -0.50197 -0.00030207 0.014523 8.7396E-06 601.7749515146936 53.41 0.63127 56.736 56.459 57.091 3.3266 66 41 2 0 0 0 0.48846 1 12060 12060 1.8442 0 1 117060 57188 10619 36015 36033 65690 65690 -0.05615858588430456 YMYYSGEYM 9 Unmodified _YMYYSGEYM_ 0 0 0 L1MC1_dup9447|chr11:116892362-116893385:+|3.323947816190027|0.1856267814787159|4.16|151.0|17|2|sense L1MC1_dup9447|chr11:116892362-116893385:+|3.323947816190027|0.1856267814787159|4.16|151.0|17|2|sense L1MC1_dup9447|chr11:116892362-116893385:+|3.323947816190027|0.1856267814787159|4.16|151.0|17|2|sense MSMS UPN48_class_I_Rep_2 6 603.7276611328125 2 603.727743 1205.44093 NaN NaN NaN NaN NaN NaN NaN 115.82 1 119.48 118.98 119.98 3.6607 0 0 0 0.39428 1 27730 27730 2.0598 0.21551 1 57189 11214 36016 36034 65691 65691 -0.1535695477095942 YNATVSRQY 9 Unmodified _YNATVSRQY_ 0 0 0 L1MB7_dup21660|chr20:3915593-3916269:-|1.4308092726742696|0.1914076875194051|2.9|151.0|19|3|sense L1MB7_dup21660|chr20:3915593-3916269:-|1.4308092726742696|0.1914076875194051|2.9|151.0|19|3|sense L1MB7_dup21660|chr20:3915593-3916269:-|1.4308092726742696|0.1914076875194051|2.9|151.0|19|3|sense MSMS UPN48_class_I_Rep_1 5 551.2713623046875 2 551.269813 1100.52507 NaN NaN NaN NaN NaN NaN NaN 43.562 1 47.072 46.572 47.572 3.5103 0 0 0 0.22485 1 8191 8191 14.838 1.3304 1 57190 10800 36017 36035 65692 65692 -0.021169195675156516 YNDLLEVK 8 Unmodified _YNDLLEVK_ 0 0 0 L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|64|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|64|3|sense L1ME1_dup8333|chr4:105265691-105267814:+|1.4403741096769374|0.0485603443983468|4.89|151.0|64|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 497.2669982910156 2 497.266207 992.517862 0.20271 0.0001008 0.88661 0.00044088 1.0893 0.00054168 497.2667201206715 40.547 1.0367 44.052 43.702 44.739 3.5048 145 96 2 0 0 0 0.82752 2 7238 7238;7284 4.756 0 1 186820 57191 12449 36018 36036 65693;65694 65693 0.021303478320646718 YNEHLPMF 8 Unmodified _YNEHLPMF_ 0 0 0 REV__MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|2|1|sense REV__MER58B_dup4619|chr12:6574849-6575163:+|1.5878632855078605|0.2274813320497198|2.8|151.0|2|1|sense MSMS UPN46_class_I_Rep_3 1 525.8258056640625 2 525.739302 1049.46405 NaN NaN NaN NaN NaN NaN NaN 35.399 1 35.399 34.899 35.899 0 0 0 0 0.40738 1 6440 6440 0.79363 0 1 + 57192 31467 36019 36037 65695 65695 -0.05870147871314657 YNELKRIYKK 10 Unmodified _YNELKRIYKK_ 0 0 0 L1PA4_dup9752|chr12:104572832-104574867:+|6.055383576254177|0.040223928338607|7.23|151.0|29|2|sense L1PA4_dup9752|chr12:104572832-104574867:+|6.055383576254177|0.040223928338607|7.23|151.0|29|2|sense L1PA4_dup9752|chr12:104572832-104574867:+|6.055383576254177|0.040223928338607|7.23|151.0|29|2|sense MSMS UPN47_class_I_Rep_2 3 452.265869140625 3 452.266233 1353.77687 NaN NaN NaN NaN NaN NaN NaN 31.379 1 34.848 34.348 35.348 3.4691 0 0 0 0.53105 1 5303 5303 0.15932 0 1 57193 14411 36020 36038 65696 65696 0.11413298793991089 YNFCNRYR 8 Unmodified _YNFCNRYR_ 0 0 0 L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|63|2|anti-sense L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|63|2|anti-sense L1MEd_dup719|chr1:93171416-93172526:+|1.7862448429622846|0.0412408895053669|5.44|151.0|63|2|anti-sense MSMS UPN47_class_I_Rep_1 2 568.2589111328125 2 568.258725 1134.5029 NaN NaN NaN NaN NaN NaN NaN 35.1 1 38.786 38.286 39.286 3.6859 0 0 0 0.40746 1 6398 6398 0.69038 0 1 57194 13214 36021 36039 65697 65697 -0.058974225169549754 YNFDGCWF 8 Unmodified _YNFDGCWF_ 0 0 0 REV__ENSG00000078269|ENST00000355585|SYNJ2;REV__nc|ENSG00000159082|O43426-4|SYNJ1 REV__ENSG00000078269|ENST00000355585|SYNJ2 MSMS UPN46_class_I_Rep_3 1 526.2029418945312 2 526.202553 1050.39055 NaN NaN NaN NaN NaN NaN NaN 64.548 1 64.548 64.048 65.048 0 0 0 0 0.40738 1 14534 14534 0.79363 0 1 + 57195 17885;19856 36022 36040 65698 65698 -0.1326269631381365 YNFDSWREFSY 11 Unmodified _YNFDSWREFSY_ 0 0 0 ENST00000475065.5_1_7:102963144-102967123:-|nuORF;DNAJC2|p.K497Qfs*14|1|0.18|ENSG00000105821|chr7:103316027-103316028|-/G|frameshift_variant;nc|ENSG00000105821|Q99543-2|DNAJC2;ENSG00000105821|ENST00000379263|DNAJC2 ENST00000475065.5_1_7:102963144-102967123:-|nuORF ENST00000475065.5_1_7:102963144-102967123:-|nuORF MSMS UPN46_class_I_Rep_3 1 505.4146728515625 3 505.217608 1512.63099 NaN NaN NaN NaN NaN NaN NaN 80.595 1 80.595 80.095 81.095 0 0 0 0 0.38417 1 18993 18993 0.094841 0 1 57196 659 36023 36041 65699 65699 -0.10481628512707175 YNFFCFFI 8 Unmodified _YNFFCFFI_ 0 0 0 REV__L1MEc_dup11054|chrX:96798116-96799410:-|1.0285748774855732|0.0090424418660309|6.83|148.0|81|3|anti-sense REV__L1MEc_dup11054|chrX:96798116-96799410:-|1.0285748774855732|0.0090424418660309|6.83|148.0|81|3|anti-sense MSMS UPN47_class_I_Rep_1 2 550.8030395507812 2 550.749139 1099.48372 NaN NaN NaN NaN NaN NaN NaN 77.2 1 80.615 80.115 81.115 3.4149 0 0 0 0.40604 1 19141 19141 2.5775 0 1 + 57197 28351 36024 36042 65700 65700 -0.06203771860555207 YNFIGSGYFIA 11 Unmodified _YNFIGSGYFIA_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-MSMS UPN48_class_I_Rep_1 5 626.3054809570312 2 626.305864 1250.59717 0.47401 0.00029688 -0.088253 -5.5274E-05 0.38576 0.0002416 626.3056470713627 70.71 0.60432 74.17 73.881 74.485 3.4598 99 63 2 0 0 0 0.32916 1 16480 16480 26.268 5.8536 1 346720 + 57198 20694 36025 36043 65701 65701 -0.01810005213792465 YNFIGSGYFIA 11 Unmodified _YNFIGSGYFIA_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-MSMS UPN48_class_I_Rep_2 6 626.3057861328125 2 626.305864 1250.59717 0.48654 0.00030472 -0.1901 -0.00011906 0.29644 0.00018566 626.3055336662642 70.474 0.6897 74.01 73.721 74.411 3.5359 152 73 3 0 0 0 0.2728 4 16467 16359;16395;16428;16467 32.786 3.7041 1 295990 + 57199 20694 36025 36043 65702;65703;65704;65705 65705 -0.01810005213792465 YNFIGSGYFIA 11 Unmodified _YNFIGSGYFIA_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-SECPEP UPN48_class_I_Rep_2 6 626.8073120117188 2 626.305864 1250.59717 0.48654 0.00030472 -0.1901 -0.00011906 0.29644 0.00018566 626.3055336662642 70.474 0.6897 74.01 73.721 74.411 3.5359 152 73 3 0 0 0 22.551 1 16428 16428 32.786 3.7041 1 295990 + 57200 20694 36025 36043 65706 65706 -0.01810005213792465 YNFIGSGYFIA 11 Unmodified _YNFIGSGYFIA_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-MSMS UPN48_class_I_Rep_3 7 626.304931640625 2 626.305864 1250.59717 0.65803 0.00041213 -0.3996 -0.00025027 0.25843 0.00016186 626.3054318553203 70.424 0.75105 73.942 73.646 74.397 3.5185 157 74 3 0 0 0 0.32916 1 16344 16344 26.268 3.5319 1 422760 + 57201 20694 36025 36043 65707 65707 -0.01810005213792465 YNFKHLAVL 9 Unmodified _YNFKHLAVL_ 0 0 0 REV__L1M5_dup23678|chr7:74713105-74713755:+|1.8774229620927207|0.0793882400690487|4.56|151.0|30|1|anti-sense REV__L1M5_dup23678|chr7:74713105-74713755:+|1.8774229620927207|0.0793882400690487|4.56|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_3 7 552.8128662109375 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 19.868 1 23.49 22.99 23.99 3.6215 0 0 0 0.4007 1 1582 1582 0.52476 0 1 + 57202 24639 36026 36044 65708 65708 0.06510326093894037 YNFQRKIR 8 Unmodified _YNFQRKIR_ 0 0 0 HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|25|2|sense HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|25|2|sense HAL1_dup10542|chr7:103357391-103358724:-|1.460869746376286|0.2458776171182848|2.57|151.0|25|2|sense MSMS UPN48_class_I_Rep_3 7 562.8202514648438 2 562.819807 1123.62506 NaN NaN NaN NaN NaN NaN NaN 113.23 1 116.89 116.39 117.39 3.6568 0 0 0 0.40746 1 26918 26918 0.69038 0 1 57203 7785 36027 36045 65709 65709 0.06819362556939268 YNFRYNLGD 9 Unmodified _YNFRYNLGD_ 0 0 0 ENST00000495790.1_1_10:32575832-32580264:-|nuORF ENST00000495790.1_1_10:32575832-32580264:-|nuORF ENST00000495790.1_1_10:32575832-32580264:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 581.2695922851562 2 581.269813 1160.52507 0.42626 0.00024777 -0.097112 -5.6448E-05 0.32915 0.00019132 581.2696547479546 52.465 0.71572 55.988 55.739 56.454 3.5227 112 63 2 0 0 0 0.36392 1 10883 10883 10.074 0 1 252260 57204 7095 36028 36046 65710 65710 -0.04876919567550431 YNFRYNLGD 9 Unmodified _YNFRYNLGD_ 0 0 0 ENST00000495790.1_1_10:32575832-32580264:-|nuORF ENST00000495790.1_1_10:32575832-32580264:-|nuORF ENST00000495790.1_1_10:32575832-32580264:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 581.7725219726562 2 581.269813 1160.52507 0.51422 0.0002989 -0.13737 -7.9852E-05 0.37684 0.00021905 581.2696914844627 52.402 0.76535 56.041 55.688 56.453 3.639 110 64 2 0 0 0 0.36392 3 10854 10854;10865;10904 10.074 0 1 244050 57205 7095 36028 36046 65711;65712;65713 65711 -0.04876919567550431 YNFSESNVT 9 Unmodified _YNFSESNVT_ 0 0 0 L1ME2_dup5992|chr7:156806912-156808809:-|1.3964400758505178|0.0439670905137695|4.99|151.0|69|3|sense L1ME2_dup5992|chr7:156806912-156808809:-|1.3964400758505178|0.0439670905137695|4.99|151.0|69|3|sense L1ME2_dup5992|chr7:156806912-156808809:-|1.3964400758505178|0.0439670905137695|4.99|151.0|69|3|sense MSMS UPN47_class_I_Rep_1 2 530.7351684570312 2 530.732729 1059.4509 NaN NaN NaN NaN NaN NaN NaN 20.825 1 24.469 23.969 24.969 3.6436 0 0 0 0.39518 1 2161 2161 1.8442 0 1 57206 12511 36029 36047 65714 65714 -0.07644307449709231 YNGAKNIHWGK 11 Unmodified _YNGAKNIHWGK_ 0 0 0 L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|94|3|sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|94|3|sense L1MA2_dup6604|chr15:58651111-58654383:-|9.238939874982426|0.1344264409047207|6.1|151.0|94|3|sense MSMS UPN47_class_I_Rep_1 2 644.3351440429688 2 644.333279 1286.652 NaN NaN NaN NaN NaN NaN NaN 44.15 1 47.845 47.345 48.345 3.6951 0 0 0 0.38417 1 9151 9151 1.1933 0.12188 1 57207 9439 36030 36048 65715 65715 0.020144263774454885 YNGKILNLFN 10 Unmodified _YNGKILNLFN_ 0 0 0 REV__L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|77|3|sense REV__L1MA1_dup3921|chr17:58260113-58262377:-|2.040526986499533|0.0060239681451313|8.4|147.0|77|3|sense MSMS UPN48_class_I_Rep_2 6 598.3255615234375 2 598.327131 1194.63971 NaN NaN NaN NaN NaN NaN NaN 78.801 1 82.434 81.934 82.934 3.6331 0 0 0 0.53105 1 18699 18699 3.2813 0.28607 1 + 57208 24802 36031 36049 65716 65716 0.05017389914405612 YNGRVYDYI 9 Unmodified _YNGRVYDYI_ 0 0 0 REV__ENST00000469797.5_1_14:75137455-75152321:-|nuORF REV__ENST00000469797.5_1_14:75137455-75152321:-|nuORF MSMS UPN47_class_I_Rep_3 4 581.779541015625 2 581.780013 1161.54547 NaN NaN NaN NaN NaN NaN NaN 41.116 1 44.354 43.854 44.854 3.2372 0 0 0 0.39598 1 8309 8309 1.6526 0.32309 1 + 57209 18679 36032 36050 65717 65717 -0.028837489077204737 YNHFLLYY 8 Unmodified _YNHFLLYY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;ENST00000577939.1_1_17:27008175-27009006:+|nuORF ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MSMS UPN48_class_I_Rep_3 7 566.7767333984375 2 566.776742 1131.53893 NaN NaN NaN NaN NaN NaN NaN 23.067 1 26.818 26.318 27.318 3.7507 0 0 0 0.40738 1 2459 2459 0.79363 0 1 57210 1888 36033 36051 65718 65718 -0.021576420684368713 YNHGFHLYHY 10 Unmodified _YNHGFHLYHY_ 0 0 0 REV__MSTB-int_dup193|chr3:177005288-177006828:+|1.0008554921107458|0.05231561449912|4.26|151.0|104|3|anti-sense REV__MSTB-int_dup193|chr3:177005288-177006828:+|1.0008554921107458|0.05231561449912|4.26|151.0|104|3|anti-sense MSMS UPN48_class_I_Rep_1 5 450.8313903808594 3 450.871995 1349.59415 NaN NaN NaN NaN NaN NaN NaN 116.53 1 120.16 119.66 120.66 3.6254 0 0 0 0.53105 1 28381 28381 0.15932 0 1 + 57211 31891 36034 36052 65719 65719 -0.06665835547960342 YNHGNFFQI 9 Unmodified _YNHGNFFQI_ 0 0 0 REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron MSMS UPN47_class_I_Rep_1 2 570.26806640625 2 570.267073 1138.51959 NaN NaN NaN NaN NaN NaN NaN 72.26 1 75.64 75.14 76.14 3.3799 0 0 0 0.31276 1 17670 17670 10.074 0.6908 1 + 57212 17801 36035 36053 65720 65720 -0.04412598359340336 YNHGNFFQI 9 Unmodified _YNHGNFFQI_ 0 0 0 REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron MSMS UPN47_class_I_Rep_3 4 570.2682495117188 2 570.267073 1138.51959 NaN NaN NaN NaN NaN NaN NaN 68.381 1 71.579 71.079 72.079 3.1977 0 0 0 0.37476 1 16612 16612 6.7232 0.51738 1 + 57213 17801 36035 36053 65721 65721 -0.04412598359340336 YNHGNFFQI 9 Unmodified _YNHGNFFQI_ 0 0 0 REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron MSMS UPN47_class_I_Rep_3 4 570.2664184570312 2 570.267073 1138.51959 NaN NaN NaN NaN NaN NaN NaN 68.468 1 71.666 71.166 72.166 3.1977 0 0 0 0.37476 1 16639 16639 6.7232 0.51738 1 + 57214 17801 36035 36053 65722 65722 -0.04412598359340336 YNHGNFFQI 9 Unmodified _YNHGNFFQI_ 0 0 0 REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron MSMS UPN47_class_I_Rep_3 4 570.2904052734375 2 570.267073 1138.51959 NaN NaN NaN NaN NaN NaN NaN 72.568 1 75.795 75.295 76.295 3.2271 0 0 0 0.37476 1 17871 17871 6.7232 0.51738 1 + 57215 17801 36035 36053 65723 65723 -0.04412598359340336 YNHGNFFQI 9 Unmodified _YNHGNFFQI_ 0 0 0 REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron REV__ENSG00000070614.15,NDST1,chr5,+,I4.1,150507699,150508130|29|4.66|2|intron MSMS UPN47_class_I_Rep_3 4 570.2687377929688 2 570.267073 1138.51959 NaN NaN NaN NaN NaN NaN NaN 72.693 1 75.92 75.42 76.42 3.2271 0 0 0 0.37476 1 17909 17909 6.7232 0.51738 1 + 57216 17801 36035 36053 65724 65724 -0.04412598359340336 YNHPTAAK 8 Unmodified _YNHPTAAK_ 0 0 0 L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|13|2|sense L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|13|2|sense L1MDa_dup1984|chr5:65501479-65502516:-|3.0246776518057885|0.065793868467784|5.52|151.0|13|2|sense MSMS UPN47_class_I_Rep_3 4 451.2298583984375 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 99.908 1 103.36 102.86 103.86 3.4483 0 0 0 0.4044 1 24692 24692 4.756 2.1785 1 57217 12103 36036 36054 65725 65725 -0.008839414508656773 YNIFDISPH 9 Unmodified _YNIFDISPH_ 0 0 0 REV__HAL1ME_dup8175|chr20:3369677-3370065:-|1.1676546212207572|0.0448812788994872|4.7|150.0|23|2|anti-sense REV__HAL1ME_dup8175|chr20:3369677-3370065:-|1.1676546212207572|0.0448812788994872|4.7|150.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 553.2695922851562 2 553.269281 1104.52401 0.40735 0.00022537 0.18918 0.00010467 0.59653 0.00033004 553.2693863497639 63.755 0.79729 67.264 66.896 67.693 3.5091 141 63 3 0 0 0 0.41259 1 14282 14282 7.2892 1.0834 1 642250 + 57218 23504 36037 36055 65726 65726 -0.02407133936435457 YNIHLNKKF 9 Unmodified _YNIHLNKKF_ 0 0 0 ENSG00000157224|ENST00000496677|CLDN12 ENSG00000157224|ENST00000496677|CLDN12 ENSG00000157224|ENST00000496677|CLDN12 MSMS UPN48_class_I_Rep_2 6 588.8297729492188 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 45.954 1 49.712 49.212 50.212 3.7579 0 0 0 0.37476 1 8926 8926 6.7232 0 1 57219 3757 36038 36056 65727 65727 0.06433113496859733 YNIHLNKKF 9 Unmodified _YNIHLNKKF_ 0 0 0 ENSG00000157224|ENST00000496677|CLDN12 ENSG00000157224|ENST00000496677|CLDN12 ENSG00000157224|ENST00000496677|CLDN12 MSMS UPN48_class_I_Rep_2 6 588.8292846679688 2 588.82984 1175.64513 NaN NaN NaN NaN NaN NaN NaN 46.32 1 50.069 49.569 50.569 3.7494 0 0 0 0.38639 1 9038 9038 3.9444 0 1 57220 3757 36038 36056 65728 65728 0.06433113496859733 YNIKKFKNL 9 Unmodified _YNIKKFKNL_ 0 0 0 REV__L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|25|1|sense REV__L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|25|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3480834960938 2 584.347866 1166.68118 0.32276 0.0001886 0.20624 0.00012052 0.529 0.00030912 584.3478105338821 32.588 0.090248 32.588 32.569 32.659 0 9 4 3 0 0 0 0.50088 1 5598 5598 0.52476 0 1 642600 + 57221 30355 36039 36057 65729 65729 0.10450570673765469 YNILALPEF 9 Unmodified _YNILALPEF_ 0 0 0 L1MCc_dup1933|chr9:34226689-34227143:-|1.496956722624731|0.0159544930858729|6.55|151.0|29|3|anti-sense L1MCc_dup1933|chr9:34226689-34227143:-|1.496956722624731|0.0159544930858729|6.55|151.0|29|3|anti-sense L1MCc_dup1933|chr9:34226689-34227143:-|1.496956722624731|0.0159544930858729|6.55|151.0|29|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.2928466796875 2 540.292225 1078.5699 0.45311 0.00024481 -0.24421 -0.00013194 0.20891 0.00011287 540.292022331107 66.887 0.8989 70.338 69.984 70.883 3.4516 98 59 2 0 0 0 0.15122 1 15407 15407 25.399 1.3787 1 471040 57222 11858 36040 36058 65730 65730 0.033755112457811265 YNIRQYEVF 9 Unmodified _YNIRQYEVF_ 0 0 0 ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206 ENST00000296885.7_1_6:88117749-88144792:+|nuORF ENST00000296885.7_1_6:88117749-88144792:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 616.307861328125 2 616.308938 1230.60332 0.51875 0.00031971 -0.2836 -0.00017479 0.23515 0.00014492 616.3086800959464 57.268 0.62081 60.559 60.292 60.913 3.2912 85 51 2 0 0 0 0.48846 1 13184 13184 1.8442 0.36234 1 103230 57223 5813 36041 36059 65731 65731 -0.0027548698230930313 YNIRQYEVF 9 Unmodified _YNIRQYEVF_ 0 0 0 ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206 ENST00000296885.7_1_6:88117749-88144792:+|nuORF ENST00000296885.7_1_6:88117749-88144792:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 616.810791015625 2 616.308938 1230.60332 0.5964 0.00036757 0.025438 1.5678E-05 0.62184 0.00038324 616.30882673679 57.169 0.85905 60.684 60.407 61.266 3.5142 112 71 2 0 0 0 0.46869 1 12277 12277 3.9444 0.3479 1 257580 57224 5813 36041 36059 65732 65732 -0.0027548698230930313 YNIWIRLQ 8 Unmodified _YNIWIRLQ_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS UPN47_class_I_Rep_1 2 553.310546875 2 553.311284 1104.60801 NaN NaN NaN NaN NaN NaN NaN 84.434 1 88 87.5 88.5 3.5655 0 0 0 0.40738 1 21124 21124 0.79363 0 1 57225 1052 36042 36060 65733 65733 0.059894419511238084 YNIYLNLLV 9 Unmodified _YNIYLNLLV_ 0 0 0 L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|41|1|anti-sense L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|41|1|anti-sense L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|41|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.8218994140625 2 562.82115 1123.62775 0.53846 0.00030306 -0.29012 -0.00016329 0.24834 0.00013977 562.820875247117 65.442 0.34798 68.897 68.745 69.093 3.4541 38 26 2 0 0 0 0.41259 1 14891 14891 7.2892 0 1 92439 57226 10692 36043 36061 65734 65734 0.07087773171224399 YNIYLNLLV 9 Unmodified _YNIYLNLLV_ 0 0 0 L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|41|1|anti-sense L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|41|1|anti-sense L1MB7_dup12268|chrX:72402763-72403545:-|2.223144650812257|0.0222203840063135|6.64|151.0|41|1|anti-sense MSMS UPN48_class_I_Rep_2 6 562.8211059570312 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 65.161 1 68.64 68.14 69.14 3.4792 0 0 0 0.37476 1 14791 14791 6.7232 0 1 57227 10692 36043 36061 65735 65735 0.07087773171224399 YNKHCFFQ 8 Unmodified _YNKHCFFQ_ 0 0 0 REV__CON__Q2TBQ1 REV__CON__Q2TBQ1 MSMS UPN48_class_I_Rep_1 5 543.7449951171875 2 543.744919 1085.47529 NaN NaN NaN NaN NaN NaN NaN 115.46 1 119.08 118.58 119.58 3.6282 0 0 0 0.40625 1 28088 28088 2.3027 0 1 + + 57228 17492 36044 36062 65736 65736 -0.06403325777182545 YNKILAKG 8 Unmodified _YNKILAKG_ 0 0 0 L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|16|1|sense L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|16|1|sense L1MA3_dup3268|chr6:38532951-38537126:+|2.0235731142107527|0.0299747670357183|6.08|151.0|16|1|sense MSMS UPN47_class_I_Rep_3 4 453.77410888671875 2 453.774003 905.533452 NaN NaN NaN NaN NaN NaN NaN 25.629 1 28.98 28.48 29.48 3.3509 0 0 0 0.40746 1 3632 3632 0.69038 0 1 57229 9526 36045 36063 65737 65737 0.07690679139761869 YNKKKTRKF 9 Unmodified _YNKKKTRKF_ 0 0 0 REV__L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|39|3|sense REV__L1PREC2_dup7406|chr19:24092682-24094253:-|3.76745641013276|0.049858583964406|6.24|151.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 606.86328125 2 606.864215 1211.71388 0.48834 0.00029636 -1.7961 -0.00109 -1.3077 -0.00079362 607.364891784336 109.56 0.14979 113.24 113.2 113.34 3.6715 25 20 2 0 0 0 0.47197 1 26095 26095 3.5965 0.60125 1 510350 + 57230 30754 36046 36064 65738 65738 0.11648777796585819 YNLESAYEL 9 Unmodified _YNLESAYEL_ 0 0 0 ENST00000471517.5_1_19:38845366-38853372:+|nuORF;ENST00000412458.6_1_19:38845366-38860119:+|nuORF;ENSG00000099338|ENST00000409235|CATSPERG ENST00000471517.5_1_19:38845366-38853372:+|nuORF ENST00000471517.5_1_19:38845366-38853372:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 551.2586059570312 2 551.258579 1100.50261 0.55276 0.00030472 -0.33572 -0.00018507 0.21705 0.00011965 551.258348297944 61.191 0.25701 64.669 64.563 64.82 3.4785 32 22 2 0 0 0 0.32682 1 13607 13607 12.241 0.60036 1 103300 57231 1437 36047 36065 65739 65739 -0.04362563755807969 YNLHWMYF 8 Unmodified _YNLHWMYF_ 0 0 0 MER51-int_dup118|chr4:70916869-70917954:-|1.306957287709086|0.007274678764974|7.49|150.0|68|3|anti-sense MER51-int_dup118|chr4:70916869-70917954:-|1.306957287709086|0.007274678764974|7.49|150.0|68|3|anti-sense MER51-int_dup118|chr4:70916869-70917954:-|1.306957287709086|0.007274678764974|7.49|150.0|68|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 587.2622680664062 2 587.262945 1172.51134 0.56405 0.00033125 1.9695 0.0011566 2.5336 0.0014879 587.2639134629674 68.29 0.1869 71.799 71.675 71.861 3.5094 20 16 2 0 0 0 0.82752 1 15643 15643 9.3474 0 1 70189 57232 16071 36048 36066 65740 65740 -0.06801868600314265 YNLLKNNF 8 Unmodified _YNLLKNNF_ 0 0 0 REV__L1MB8_dup7346|chr8:89778300-89779310:-|1.1283165732316445|0.089818950850995|3.65|151.0|35|3|sense REV__L1MB8_dup7346|chr8:89778300-89779310:-|1.1283165732316445|0.089818950850995|3.65|151.0|35|3|sense MSMS UPN48_class_I_Rep_2 6 513.316650390625 2 513.274367 1024.53418 NaN NaN NaN NaN NaN NaN NaN 47.032 1 50.781 50.281 51.281 3.7494 0 0 0 0.4044 1 9256 9256 4.756 0 1 + 57233 26432 36049 36067 65741 65741 0.02289473788800933 YNLLKNNF 8 Unmodified _YNLLKNNF_ 0 0 0 REV__L1MB8_dup7346|chr8:89778300-89779310:-|1.1283165732316445|0.089818950850995|3.65|151.0|35|3|sense REV__L1MB8_dup7346|chr8:89778300-89779310:-|1.1283165732316445|0.089818950850995|3.65|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 513.2760620117188 2 513.274367 1024.53418 0.23899 0.00012267 -0.15042 -7.7204E-05 0.088579 4.5465E-05 513.2744218034982 46.966 0.50068 50.602 50.366 50.866 3.6363 45 32 3 0 0 0 0.82752 1 9236 9236 7.9102 0 1 134180 + 57234 26432 36049 36067 65742 65742 0.02289473788800933 YNNKIFLF 8 Unmodified _YNNKIFLF_ 0 0 0 L1MC1_dup4484|chr5:87296117-87298111:-|1.8559547248360435|0.091329747606151|4.34|151.0|115|3|anti-sense L1MC1_dup4484|chr5:87296117-87298111:-|1.8559547248360435|0.091329747606151|4.34|151.0|115|3|anti-sense L1MC1_dup4484|chr5:87296117-87298111:-|1.8559547248360435|0.091329747606151|4.34|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_1 2 529.7861328125 2 529.78711 1057.55967 NaN NaN NaN NaN NaN NaN NaN 31.652 1 35.381 34.881 35.881 3.7293 0 0 0 0.40604 1 5341 5341 2.5775 0 1 57235 11150 36050 36068 65743 65743 0.033189483111982554 YNPIYQFLI 9 Unmodified _YNPIYQFLI_ 0 0 0 L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|153|2|anti-sense L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|153|2|anti-sense L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|153|2|anti-sense MSMS UPN48_class_I_Rep_3 7 585.8135375976562 2 585.813325 1169.6121 NaN NaN NaN NaN NaN NaN NaN 77.201 1 80.803 80.303 81.303 3.6016 0 0 0 0.36505 1 18221 18221 7.2892 0 1 57236 9414 36051 36069 65744 65744 0.03407486654191416 YNPPARWK 8 Unmodified _YNPPARWK_ 0 0 0 LTR12_dup306|chr6:34439485-34440071:+|1.2307912645149452|0.0017311946567694|9.47|149.0|32|2|anti-sense LTR12_dup306|chr6:34439485-34440071:+|1.2307912645149452|0.0017311946567694|9.47|149.0|32|2|anti-sense LTR12_dup306|chr6:34439485-34440071:+|1.2307912645149452|0.0017311946567694|9.47|149.0|32|2|anti-sense MSMS UPN48_class_I_Rep_1 5 516.2752075195312 2 516.274701 1030.53485 NaN NaN NaN NaN NaN NaN NaN 22.145 1 25.698 25.198 26.198 3.5533 0 0 0 0.40738 1 2123 2123 0.79363 0 1 57237 15528 36052 36070 65745 65745 0.020803132284981984 YNPVSNTLCY 10 Unmodified _YNPVSNTLCY_ 0 0 0 Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|30|3|anti-sense Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|30|3|anti-sense Tigger3b_dup4224|chr10:87256838-87257195:+|1.0422198267277818|0.0354404792195843|4.88|151.0|30|3|anti-sense MSMS UPN48_class_I_Rep_1 5 587.2659301757812 2 587.265881 1172.51721 NaN NaN NaN NaN NaN NaN NaN 68.504 1 71.956 71.456 72.456 3.4517 0 0 0 0.53105 1 15823 15823 5.2969 0.39987 1 57238 33393 36053 36071 65746 65746 -0.062148148793085056 YNQQIYYRQ 9 Unmodified _YNQQIYYRQ_ 0 0 0 REV__L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|6|1|sense REV__L1MA4A_dup5745|chr18:9231844-9232847:-|1.3436692382089317|0.0936857362878562|3.84|151.0|6|1|sense MSMS UPN48_class_I_Rep_3 7 638.3092041015625 2 638.309469 1274.60439 NaN NaN NaN NaN NaN NaN NaN 24.902 1 28.671 28.171 29.171 3.769 0 0 0 0.4007 1 2953 2953 0.52476 0 1 + 57239 25337 36054 36072 65747 65747 -0.02193272613408226 YNQSDLRL 8 Unmodified _YNQSDLRL_ 0 0 0 REV__Tigger1_dup10119|chr14:70916439-70918695:-|4.925584706045415|0.1162489276381283|5.41|151.0|119|2|anti-sense REV__Tigger1_dup10119|chr14:70916439-70918695:-|4.925584706045415|0.1162489276381283|5.41|151.0|119|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 504.75921630859375 2 504.759081 1007.50361 0.2311 0.00011665 0.077366 3.9051E-05 0.30847 0.0001557 504.7591196680763 52.893 1.3613 56.412 55.963 57.324 3.5192 280 102 4 0 0 0 0.82752 1 11077 11077 37.974 1.9298 1 4516800 + 57240 32322 36055 36073 65748 65748 0.00015695403749305115 YNQSDLRL 8 Unmodified _YNQSDLRL_ 0 0 0 REV__Tigger1_dup10119|chr14:70916439-70918695:-|4.925584706045415|0.1162489276381283|5.41|151.0|119|2|anti-sense REV__Tigger1_dup10119|chr14:70916439-70918695:-|4.925584706045415|0.1162489276381283|5.41|151.0|119|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 504.75927734375 2 504.759081 1007.50361 0.35194 0.00017765 -0.025651 -1.2948E-05 0.32629 0.0001647 504.7590754809955 52.802 1.5726 56.412 55.933 57.505 3.6098 273 108 4 0 0 0 0.82752 1 10995 10995 37.974 1.4678 1 5516400 + 57241 32322 36055 36073 65749 65749 0.00015695403749305115 YNQSFSLY 8 Unmodified _YNQSFSLY_ 0 0 0 REV__ENST00000282077.7_3_2:173460744-173460831:+|nuORF REV__ENST00000282077.7_3_2:173460744-173460831:+|nuORF MSMS UPN48_class_I_Rep_2 6 511.3283386230469 2 511.234907 1020.45526 NaN NaN NaN NaN NaN NaN NaN 46.098 1 49.856 49.356 50.356 3.7579 0 0 0 0.40659 1 8970 8970 1.8442 0 1 + 57242 21625 36056 36074 65750 65750 -0.05414798236131446 YNRFKFVPRK 10 Unmodified _YNRFKFVPRK_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|214|3|anti-sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|214|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 452.2629699707031 3 452.262935 1353.76697 0.14224 6.4329E-05 -0.19593 -8.8611E-05 -0.053688 -2.4281E-05 452.2628087425035 58.948 1.3532 62.435 61.475 62.828 3.487 150 83 2 0 0 0 0.56454 1 12875 12875 0.62683 0.17231 1 280000 + 57243 25455 36057 36075 65751 65751 0.10424155579244143 YNRFKFVPRK 10 Unmodified _YNRFKFVPRK_ 0 0 0 REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|214|3|anti-sense REV__L1MA6_dup3525|chr10:16711061-16714059:-|1.5497992138256038|0.0159688320705562|6.6|151.0|214|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 452.2628173828125 3 452.262935 1353.76697 0.11362 5.1385E-05 -0.23053 -0.00010426 -0.11691 -5.2875E-05 452.26281114719467 58.176 1.2025 61.708 61.315 62.517 3.5317 128 79 2 0 0 0 0.56454 1 12586 12586 0.62683 0.21856 1 244020 + 57244 25455 36057 36075 65752 65752 0.10424155579244143 YNRGDSTF 8 Unmodified _YNRGDSTF_ 0 0 0 ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA ENSG00000171560|ENST00000403106|FGA ENSG00000171560|ENST00000403106|FGA MULTI-MSMS UPN48_class_I_Rep_2 6 480.21441650390625 2 480.214506 958.414459 0.26191 0.00012577 -0.055438 -2.6622E-05 0.20647 9.9149E-05 480.214442784132 27.719 1.0502 31.35 31.005 32.056 3.6311 229 110 3 0 0 0 0.82752 1 3697 3697 14.838 14.838 1 330700 57245 4530 36058 36076 65753 65753 -0.06641139555756581 YNRGDSTF 8 Unmodified _YNRGDSTF_ 0 0 0 ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA ENSG00000171560|ENST00000403106|FGA ENSG00000171560|ENST00000403106|FGA MULTI-MSMS UPN48_class_I_Rep_3 7 480.21490478515625 2 480.214506 958.414459 0.11579 5.5606E-05 0.58349 0.0002802 0.69929 0.00033581 480.2148332571154 27.587 1.3927 31.342 30.91 32.302 3.7555 294 161 3 0 0 0 0.82752 1 3599 3599 14.838 0.25658 1 330290 57246 4530 36058 36076 65754 65754 -0.06641139555756581 YNRGWGKSHG 10 Unmodified _YNRGWGKSHG_ 0 0 0 REV__nc|ENSG00000116990|P12524-2|MYCL REV__nc|ENSG00000116990|P12524-2|MYCL MULTI-MSMS UPN47_class_I_Rep_2 3 581.2811889648438 2 581.281046 1160.54754 0.44186 0.00025684 0.29527 0.00017164 0.73713 0.00042848 581.2812255477817 73.709 0.55238 77.014 76.696 77.248 3.3048 108 50 3 0 0 0 0.56155 1 18147 18147 2.7352 2.7352 1 332510 + 57247 18618 36059 36077 65755 65755 -0.026312753792581134 YNRIAKLKK 9 Unmodified _YNRIAKLKK_ 0 0 0 nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B nc|ENSG00000088305|Q9UBC3-2|DNMT3B nc|ENSG00000088305|Q9UBC3-2|DNMT3B MSMS UPN48_class_I_Rep_2 6 567.3637084960938 2 567.361308 1132.70806 NaN NaN NaN NaN NaN NaN NaN 57.568 1 61.082 60.582 61.582 3.5142 0 0 0 0.40038 1 12461 12461 0.6015 0 1 57248 1308 36060 36078 65756 65756 0.14701679284939928 YNRNPIIFTN 10 Unmodified _YNRNPIIFTN_ 0 0 0 REV__L1MB4_dup2741|chr5:173077694-173078259:-|1.2692260457572235|0.0411520438736725|4.95|151.0|27|3|anti-sense REV__L1MB4_dup2741|chr5:173077694-173078259:-|1.2692260457572235|0.0411520438736725|4.95|151.0|27|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 626.3278198242188 2 626.327662 1250.64077 0.19861 0.00012439 -0.055541 -3.4787E-05 0.14306 8.9605E-05 626.3275176373912 46.659 0.86248 50.359 49.999 50.861 3.6999 123 56 3 0 0 0 0.56155 1 9843 9843 2.7352 1.2533 1 182560 + 57249 25950 36061 36079 65757 65757 0.02547604283313376 YNRNPIIFTN 10 Unmodified _YNRNPIIFTN_ 0 0 0 REV__L1MB4_dup2741|chr5:173077694-173078259:-|1.2692260457572235|0.0411520438736725|4.95|151.0|27|3|anti-sense REV__L1MB4_dup2741|chr5:173077694-173078259:-|1.2692260457572235|0.0411520438736725|4.95|151.0|27|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 626.8297119140625 2 626.327662 1250.64077 0.30413 0.00019048 -0.0076257 -4.7762E-06 0.2965 0.00018571 626.3276932844435 47.106 0.69687 50.458 50.201 50.898 3.3515 99 45 3 0 0 0 0.56155 1 10018 10018 2.7352 0 1 137660 + 57250 25950 36061 36079 65758 65758 0.02547604283313376 YNRNQYFY 8 Unmodified _YNRNQYFY_ 0 0 0 L1MEb_dup639|chr6:37871666-37872381:-|4.584502717492783|0.0129974730836404|8.46|151.0|25|3|sense L1MEb_dup639|chr6:37871666-37872381:-|4.584502717492783|0.0129974730836404|8.46|151.0|25|3|sense L1MEb_dup639|chr6:37871666-37872381:-|4.584502717492783|0.0129974730836404|8.46|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 584.2633666992188 2 584.26453 1166.51451 NaN NaN NaN NaN NaN NaN NaN 68.234 1 71.742 71.242 72.242 3.5083 0 0 0 0.40364 1 15724 15724 5.7604 1.0044 1 57251 12988 36062 36080 65759 65759 -0.06208902221965218 YNRPITEPPG 10 Unmodified _YNRPITEPPG_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS UPN47_class_I_Rep_2 3 572.2924194335938 2 572.293288 1142.57202 0.045692 2.6149E-05 -0.13315 -7.62E-05 -0.087456 -5.005E-05 572.2931793302678 35.441 0.87403 38.852 38.532 39.406 3.4114 85 55 2 0 0 0 0.56333 1 6636 6636 1.4819 1.4819 1 135880 57252 3850 36063 36081 65760 65760 0.0064393998359264515 YNRPWLRPN 9 Unmodified _YNRPWLRPN_ 0 0 0 L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 405.8843688964844 3 405.884235 1214.63087 -0.045149 -1.8325E-05 0.14919 6.0554E-05 0.10404 4.2229E-05 405.88419889470464 65.415 1.498 68.869 68.278 69.776 3.4541 181 108 3 0 0 0 0.49676 1 14915 14915 0.96228 0 1 268920 57253 9385 36064 36082 65761 65761 0.032144610686145825 YNRPWLRPN 9 Unmodified _YNRPWLRPN_ 0 0 0 L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 405.88409423828125 3 405.884235 1214.63087 0.11238 4.5612E-05 -0.15769 -6.4005E-05 -0.045316 -1.8393E-05 405.8840991674358 65.263 1.4742 68.743 68.117 69.591 3.4792 180 104 3 0 0 0 0.48433 1 14725 14725 2.2828 1.0894 1 362750 57254 9385 36064 36082 65762 65762 0.032144610686145825 YNRPWLRPN 9 Unmodified _YNRPWLRPN_ 0 0 0 L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense L1MA2_dup422|chr1:217476312-217480070:+|1.1446474181394155|0.0409363070080859|4.81|149.0|65|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 405.88421630859375 3 405.884235 1214.63087 0.13183 5.3506E-05 -0.16503 -6.6982E-05 -0.033201 -1.3476E-05 405.88408344189094 65.466 1.5201 68.973 68.018 69.539 3.5077 169 110 3 0 0 0 0.48433 1 14914 14914 2.2828 1.0679 1 209980 57255 9385 36064 36082 65763 65763 0.032144610686145825 YNRQEYRI 8 Unmodified _YNRQEYRI_ 0 0 0 REV__Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|52|2|sense REV__Tigger1_dup10101|chr14:67948959-67951216:-|2.1885816993056|0.068128136372813|5.01|151.0|52|2|sense MSMS UPN47_class_I_Rep_2 3 571.291015625 2 571.291079 1140.56761 NaN NaN NaN NaN NaN NaN NaN 23.267 1 26.712 26.212 27.212 3.4447 0 0 0 0.40746 1 2904 2904 0.69038 0 1 + 57256 32319 36065 36083 65764 65764 0.0029447556069044367 YNRVERYL 8 Unmodified _YNRVERYL_ 0 0 0 ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK MSMS UPN48_class_I_Rep_2 6 556.794189453125 2 556.795998 1111.57744 NaN NaN NaN NaN NaN NaN NaN 66.042 1 69.529 69.029 70.029 3.4866 0 0 0 0.40404 1 15058 15058 5.2307 0.90143 1 57257 2561 36066 36084 65765 65765 0.026116635660855536 YNSKRRHRR 9 Unmodified _YNSKRRHRR_ 0 0 0 ENST00000453780.1_1_1:26215480-26215597:+|nuORF ENST00000453780.1_1_1:26215480-26215597:+|nuORF ENST00000453780.1_1_1:26215480-26215597:+|nuORF MSMS UPN46_class_I_Rep_3 1 636.8606567382812 2 636.860861 1271.70717 NaN NaN NaN NaN NaN NaN NaN 69.775 1 69.775 69.275 70.275 0 0 0 0 0.4007 1 16005 16005 0.52476 0 1 57258 6825 36067 36085 65766 65766 0.08218277688570197 YNSRPGNILY 10 Unmodified _YNSRPGNILY_ 0 0 0 REV__L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|25|3|sense REV__L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|25|3|sense MSMS UPN48_class_I_Rep_2 6 598.80712890625 2 598.806562 1195.59857 NaN NaN NaN NaN NaN NaN NaN 39.966 1 43.707 43.207 44.207 3.7413 0 0 0 0.53105 1 7149 7149 1.4819 0 1 + 57259 28663 36068 36086 65767 65767 0.00859628874968621 YNSVVLVIF 9 Unmodified _YNSVVLVIF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|50|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|50|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.3026123046875 2 527.302593 1052.59063 0.31809 0.00016773 -0.22947 -0.000121 0.088614 4.6726E-05 527.3023806713601 85.441 0.46062 89.047 88.858 89.318 3.6059 63 49 2 0 0 0 0.21527 2 20464 20464;20503 19.257 0 1 103010 57260 10205 36069 36087 65768;65769 65768 0.06644101625443 YNSVVLVIF 9 Unmodified _YNSVVLVIF_ 0 0 0 L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|50|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|50|2|anti-sense L1MB2_dup135|chr1:43846848-43847807:+|1.2144452323095418|0.0118547464272009|6.68|150.0|50|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 527.3021850585938 2 527.302593 1052.59063 0.48581 0.00025617 -0.49342 -0.00026018 -0.0076051 -4.0102E-06 527.3023444368397 85.347 0.28209 89.096 88.975 89.257 3.7494 61 35 2 0 0 0 0.21527 1 20266 20266 19.257 0 1 134660 57261 10205 36069 36087 65770 65770 0.06644101625443 YNTADKGTIF 10 Unmodified _YNTADKGTIF_ 0 0 0 REV__L1ME4a_dup3645|chr2:69925436-69925867:-|1.1344317086349678|0.1132690358164825|3.32|151.0|7|2|sense REV__L1ME4a_dup3645|chr2:69925436-69925867:-|1.1344317086349678|0.1132690358164825|3.32|151.0|7|2|sense MSMS UPN48_class_I_Rep_2 6 565.2797241210938 2 565.279846 1128.54514 NaN NaN NaN NaN NaN NaN NaN 40.163 1 43.904 43.404 44.404 3.7413 0 0 0 0.53105 1 7204 7204 2.9952 0 1 + 57262 28234 36070 36088 65771 65771 -0.013991686275630855 YNVFEPLLGF 10 Unmodified _YNVFEPLLGF_ 0 0 0 REV__L1ME3A_dup12244|chr14:49637592-49638075:+|1.6365776683300923|0.3235044899746228|2.34|151.0|30|2|anti-sense REV__L1ME3A_dup12244|chr14:49637592-49638075:+|1.6365776683300923|0.3235044899746228|2.34|151.0|30|2|anti-sense MSMS UPN48_class_I_Rep_1 5 599.813232421875 2 599.810782 1197.60701 NaN NaN NaN NaN NaN NaN NaN 35.13 1 38.644 38.144 39.144 3.5144 0 0 0 0.53105 1 5707 5707 1.3295 0.63916 1 + 57263 27988 36071 36089 65772 65772 0.016111827915665344 YNVKLLRGF 9 Unmodified _YNVKLLRGF_ 0 0 0 REV__ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|49|3|sense REV__ERVL-B4-int_dup3425|chr15:30869425-30871437:+|4.34174513964891|0.008391740329343|9.02|151.0|49|3|sense MSMS UPN48_class_I_Rep_2 6 555.325927734375 2 555.326934 1108.63931 NaN NaN NaN NaN NaN NaN NaN 56.391 1 59.924 59.424 60.424 3.5333 0 0 0 0.39428 1 12105 12105 2.0598 0 1 + 57264 23267 36072 36090 65773 65773 0.08934014985220529 YNVKVNKDK 9 Unmodified _YNVKVNKDK_ 0 0 0 REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|13|1|sense REV__Ricksha_c_dup823|chr11:68512342-68514057:+|5.358496102555648|0.1202476396948183|5.48|151.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 554.3120727539062 2 554.31148 1106.60841 NaN NaN NaN NaN NaN NaN NaN 43.15 1 46.66 46.16 47.16 3.5103 0 0 0 0.3377 1 8066 8066 8.7454 0.15213 1 + 57265 32179 36073 36091 65774 65774 0.059368168803075605 YNVSVSTR 8 Unmodified _YNVSVSTR_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MSMS UPN46_class_I_Rep_3 1 463.2412109375 2 463.240524 924.466495 NaN NaN NaN NaN NaN NaN NaN 107.7 1 107.7 107.2 108.2 0 0 0 0 0.4044 1 26274 26274 4.756 0 1 57266 1344 36074 36092 65775 65775 0.0012402385800669435 YNVYGRVL 8 Unmodified _YNVYGRVL_ 0 0 0 REV__ENST00000573629.5_1_17:80969346-81006625:-|nuORF REV__ENST00000573629.5_1_17:80969346-81006625:-|nuORF MSMS UPN47_class_I_Rep_2 3 492.26910400390625 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 64.909 1 68.165 67.665 68.665 3.2556 0 0 0 0.4044 1 15494 15494 4.756 0 1 + 57267 23099 36075 36093 65776 65776 0.03165491134382137 YNVYGRVL 8 Unmodified _YNVYGRVL_ 0 0 0 REV__ENST00000573629.5_1_17:80969346-81006625:-|nuORF REV__ENST00000573629.5_1_17:80969346-81006625:-|nuORF MSMS UPN47_class_I_Rep_3 4 492.2690734863281 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 64.939 1 68.119 67.619 68.619 3.1795 0 0 0 0.39819 1 15564 15564 8.5933 0 1 + 57268 23099 36075 36093 65777 65777 0.03165491134382137 YNWCYHTE 8 Unmodified _YNWCYHTE_ 0 0 0 ENSG00000016391|ENST00000315251|CHDH ENSG00000016391|ENST00000315251|CHDH ENSG00000016391|ENST00000315251|CHDH MSMS UPN48_class_I_Rep_1 5 558.2164916992188 2 558.216192 1114.41783 NaN NaN NaN NaN NaN NaN NaN 117.96 1 121.59 121.09 122.09 3.6215 0 0 0 0.40746 1 28759 28759 0.69038 0 1 57269 800 36076 36094 65778 65778 -0.13480212773401945 YNWHLKGGSL 10 Unmodified _YNWHLKGGSL_ 0 0 0 MER21B_dup1034|chr6:149587178-149587996:-|1.5622672048828798|0.4054192236824568|1.95|151.0|3|1|sense MER21B_dup1034|chr6:149587178-149587996:-|1.5622672048828798|0.4054192236824568|1.95|151.0|3|1|sense MER21B_dup1034|chr6:149587178-149587996:-|1.5622672048828798|0.4054192236824568|1.95|151.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 587.8058471679688 2 587.803823 1173.59309 NaN NaN NaN NaN NaN NaN NaN 44.491 1 48.128 47.628 48.628 3.6372 0 0 0 0.53105 1 8410 8410 1.4819 0 1 57270 15861 36077 36095 65779 65779 0.01323950083155978 YNWNRNIGH 9 Unmodified _YNWNRNIGH_ 0 0 0 REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1 REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1 MULTI-MSMS UPN47_class_I_Rep_2 3 587.2786865234375 2 587.281046 1172.54754 0.046585 2.7358E-05 -1.1193 -0.00065735 -1.0727 -0.00062999 587.280300561898 27.853 0.57011 31.351 31.113 31.683 3.4986 86 46 2 0 0 0 0.48846 1 4210 4210 1.8442 0.51471 1 97471 + 57271 20774 36078 36096 65780 65780 -0.03183275379251427 YNYFIRYY 8 Unmodified _YNYFIRYY_ 0 0 0 MER1A_dup84|chr1:77626202-77626644:-|1.2438415248420789|0.0291392871905547|5.42|151.0|3|1|sense MER1A_dup84|chr1:77626202-77626644:-|1.2438415248420789|0.0291392871905547|5.42|151.0|3|1|sense MER1A_dup84|chr1:77626202-77626644:-|1.2438415248420789|0.0291392871905547|5.42|151.0|3|1|sense MSMS UPN47_class_I_Rep_2 3 601.2876586914062 2 601.287474 1200.5604 NaN NaN NaN NaN NaN NaN NaN 39.68 1 43.058 42.558 43.558 3.3785 0 0 0 0.40746 1 7820 7820 0.69038 0 1 57272 15808 36079 36097 65781 65781 -0.03186257039692464 YNYFKINVF 9 Unmodified _YNYFKINVF_ 0 0 0 L1MD2_dup2200|chr3:138191361-138192275:-|1.310101834430361|0.0144070356730957|6.51|151.0|25|2|sense L1MD2_dup2200|chr3:138191361-138192275:-|1.310101834430361|0.0144070356730957|6.51|151.0|25|2|sense L1MD2_dup2200|chr3:138191361-138192275:-|1.310101834430361|0.0144070356730957|6.51|151.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 604.31103515625 2 604.310949 1206.60735 0.60674 0.00036666 -0.73537 -0.00044439 -0.12863 -7.7733E-05 604.310729325613 69.367 0.42058 72.88 72.526 72.946 3.5128 36 31 2 0 0 0 0.46434 1 15908 15908 4.3292 0.73274 1 104820 57273 11986 36080 36098 65782 65782 0.012306025114185104 YNYIYYYI 8 Unmodified _YNYIYYYI_ 0 0 0 L1MC4a_dup9321|chr18:59336919-59337602:+|1.0795068731640372|0.4834906428099887|1.16|151.0|43|2|anti-sense L1MC4a_dup9321|chr18:59336919-59337602:+|1.0795068731640372|0.4834906428099887|1.16|151.0|43|2|anti-sense L1MC4a_dup9321|chr18:59336919-59337602:+|1.0795068731640372|0.4834906428099887|1.16|151.0|43|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 587.7569580078125 2 587.776408 1173.53826 0.0070726 4.1571E-06 -2.6647 -0.0015663 -2.6577 -0.0015621 588.2752969982491 41.762 0.064209 45.441 45.392 45.457 3.6792 6 4 2 0 0 0 0.72333 1 8411 8411 5.2307 0 1 22665 57274 11632 36081 36099 65783 65783 -0.041564815081301276 YNYQYIYF 8 Unmodified _YNYQYIYF_ 0 0 0 REV__L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|134|3|anti-sense REV__L1MB7_dup18564|chr15:99390689-99392883:+|1.5381085810418549|0.1239829313410337|3.63|150.0|134|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 587.2655639648438 2 587.266207 1172.51786 0.56405 0.00033125 -3.586 -0.002106 -3.022 -0.0017747 587.2639134629674 68.29 0.1869 71.799 71.675 71.861 3.5094 20 16 2 0 0 0 0.82752 1 15655 15655 13.508 1.2672 1 70189 + 57275 26185 36082 36100 65784 65784 -0.06149652167937347 YNYRFRKK 8 Unmodified _YNYRFRKK_ 0 0 0 REV__L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|1|1|sense REV__L1MCa_dup1442|chr3:149949761-149950501:-|1.554751136310101|0.1289833885302292|3.59|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 587.82666015625 2 587.827632 1173.64071 NaN NaN NaN NaN NaN NaN NaN 46.078 1 49.597 49.097 50.097 3.5192 0 0 0 0.40746 1 8957 8957 0.69038 0.088878 1 + 57276 27185 36083 36101 65785 65785 0.060836490739802684 YNYRQLEVF 9 Unmodified _YNYRQLEVF_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS UPN48_class_I_Rep_2 6 616.3097534179688 2 616.308938 1230.60332 0.5964 0.00036757 0.025438 1.5678E-05 0.62184 0.00038324 616.30882673679 57.169 0.85905 60.684 60.407 61.266 3.5142 112 71 2 0 0 0 0.48846 1 12457 12457 1.8442 0 1 257580 + 57277 18664 36084 36102 65786 65786 -0.0027548698228656576 YNYVYFCFC 9 Unmodified _YNYVYFCFC_ 0 0 0 L1M2_dup767|chr2:48370563-48371115:-|1.4192594954628568|0.1183161780581243|3.58|151.0|24|1|anti-sense L1M2_dup767|chr2:48370563-48371115:-|1.4192594954628568|0.1183161780581243|3.58|151.0|24|1|anti-sense L1M2_dup767|chr2:48370563-48371115:-|1.4192594954628568|0.1183161780581243|3.58|151.0|24|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 611.7417602539062 2 611.240821 1220.46709 0.45222 0.00027641 -1.0544 -0.00064452 -0.60222 -0.0003681 611.2403985147276 53.828 0.74653 57.342 57.038 57.785 3.5143 126 54 3 0 0 0 0.50015 2 11292 11292;11314 0.6015 0.6015 1 476790 57278 8709 36085 36103 65787;65788 65787 -0.13432640808809992 YPAKVVRYS 9 Unmodified _YPAKVVRYS_ 0 0 0 REV__L1MA1_dup1901|chr8:54055941-54056632:+|1.299447962019535|0.2924207115137042|2.15|151.0|28|2|anti-sense REV__L1MA1_dup1901|chr8:54055941-54056632:+|1.299447962019535|0.2924207115137042|2.15|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_3 7 541.7930908203125 2 541.803291 1081.59203 NaN NaN NaN NaN NaN NaN NaN 112.52 1 116.18 115.68 116.68 3.6614 0 0 0 0.39428 1 26736 26736 2.0598 0 1 + 57279 24765 36086 36104 65789 65789 0.054497357142281544 YPAPCWYW 8 Unmodified _YPAPCWYW_ 0 0 0 L1PB1_dup5660|chr7:37135426-37137542:+|1.321149491843026|0.0163020090099647|6.34|151.0|100|1|anti-sense L1PB1_dup5660|chr7:37135426-37137542:+|1.321149491843026|0.0163020090099647|6.34|151.0|100|1|anti-sense L1PB1_dup5660|chr7:37135426-37137542:+|1.321149491843026|0.0163020090099647|6.34|151.0|100|1|anti-sense MSMS UPN47_class_I_Rep_1 2 543.2312622070312 2 543.231113 1084.44767 NaN NaN NaN NaN NaN NaN NaN 114.82 1 118.4 117.9 118.9 3.5809 0 0 0 0.40738 1 28383 28383 0.79363 0 1 57280 15153 36087 36105 65790 65790 -0.09117229037428842 YPARISLR 8 Unmodified _YPARISLR_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MSMS UPN46_class_I_Rep_3 1 488.6029968261719 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 110.63 1 110.63 110.13 111.13 0 0 0 0 0.40625 1 27249 27249 2.3027 0 1 57281 2729 36088 36106 65791 65791 0.07784886262618329 YPASPVWG 8 Unmodified _YPASPVWG_ 0 0 0 ENST00000166139.8_1_19:682798-683302:+|nuORF ENST00000166139.8_1_19:682798-683302:+|nuORF ENST00000166139.8_1_19:682798-683302:+|nuORF MSMS UPN47_class_I_Rep_2 3 438.7160339355469 2 438.716153 875.417754 NaN NaN NaN NaN NaN NaN NaN 54.803 1 58.121 57.621 58.621 3.3187 0 0 0 0.40604 1 12419 12419 2.5775 0 1 57282 5851 36089 36107 65792 65792 -0.02493844711091242 YPASTVQIL 9 Unmodified _YPASTVQIL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MSMS UPN48_class_I_Rep_1 5 496.27642822265625 2 496.276575 990.538597 NaN NaN NaN NaN NaN NaN NaN 86.812 1 90.425 89.925 90.925 3.613 0 0 0 0.27207 1 20799 20799 12.241 0 1 57283 1568 36090 36108 65793 65793 0.04294938211717181 YPCCCKGHDL 10 Unmodified _YPCCCKGHDL_ 0 0 0 L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense;L1PREC2_dup575|chr2:24108924-24110325:+|1.5048583890055691|0.2541788947830014|2.57|151.0|48|1|anti-sense;L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|157|2|anti-sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense MSMS UPN47_class_I_Rep_2 3 569.7269287109375 2 569.727555 1137.44056 NaN NaN NaN NaN NaN NaN NaN 68.542 1 71.812 71.312 72.312 3.2696 0 0 0 0.53105 1 16594 16594 1.4819 0.28856 1 57284 13925 36091 36109 65794 65794 -0.12266652971788972 YPCCCKGHDL 10 Unmodified _YPCCCKGHDL_ 0 0 0 L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense;L1PREC2_dup575|chr2:24108924-24110325:+|1.5048583890055691|0.2541788947830014|2.57|151.0|48|1|anti-sense;L1PA13_dup1374|chr3:87910347-87913850:+|8.219093162376195|0.0233973093978763|8.46|146.0|157|2|anti-sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense L1PA15_dup3429|chr7:27637467-27639599:+|1.0108824799810712|0.0449544337847344|4.49|151.0|68|1|anti-sense MSMS UPN47_class_I_Rep_2 3 569.7265625 2 569.727555 1137.44056 NaN NaN NaN NaN NaN NaN NaN 68.647 1 71.917 71.417 72.417 3.2696 0 0 0 0.53105 1 16626 16626 1.4819 0.15237 1 57285 13925 36091 36109 65795 65795 -0.12266652971788972 YPCPPVHRY 9 Unmodified _YPCPPVHRY_ 0 0 0 REV__AluJb_dup111803|chr18:21674227-21674547:-|1.1820811242806024|0.0954327723891478|3.63|151.0|13|1|anti-sense REV__AluJb_dup111803|chr18:21674227-21674547:-|1.1820811242806024|0.0954327723891478|3.63|151.0|13|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 566.777099609375 2 566.273844 1130.53313 0.22293 0.00012624 0.68304 0.00038679 0.90598 0.00051303 566.7764552655209 45 1.3025 48.244 47.786 49.089 3.2441 231 82 5 0 0 0 0.48414 1 9404 9404 2.3027 0 1 231580 + 57286 16915 36092 36110 65796 65796 -0.026910638517392726 YPEFMGRR 8 Unmodified _YPEFMGRR_ 0 0 0 REV__nc|ENSG00000103723|Q13367|AP3B2 REV__nc|ENSG00000103723|Q13367|AP3B2 MSMS UPN48_class_I_Rep_1 5 528.259765625 2 528.258194 1054.50183 NaN NaN NaN NaN NaN NaN NaN 26.298 1 29.864 29.364 30.364 3.5667 0 0 0 0.40625 1 3206 3206 2.3027 0.24298 1 + 57287 18240 36093 36111 65797 65797 -0.023236368858306378 YPESIPRK 8 Unmodified _YPESIPRK_ 0 0 0 nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX nc|ENSG00000147231|Q6NSI4-3|RADX nc|ENSG00000147231|Q6NSI4-3|RADX MSMS UPN48_class_I_Rep_2 6 495.274169921875 2 495.274367 988.53418 NaN NaN NaN NaN NaN NaN NaN 72.525 1 76.09 75.59 76.59 3.5645 0 0 0 0.40746 1 16978 16978 0.69038 0 1 57288 3467 36094 36112 65798 65798 0.03945473788792242 YPFFLRKKI 9 Unmodified _YPFFLRKKI_ 0 0 0 REV__L1ME3B_dup4415|chrX:20183468-20183815:-|1.1180639432145911|0.0228033987974602|5.62|151.0|18|1|anti-sense REV__L1ME3B_dup4415|chrX:20183468-20183815:-|1.1180639432145911|0.0228033987974602|5.62|151.0|18|1|anti-sense MSMS UPN46_class_I_Rep_3 1 606.3692626953125 2 606.368601 1210.72265 NaN NaN NaN NaN NaN NaN NaN 88.422 1 88.422 87.922 88.922 0 0 0 0 0.40038 1 21233 21233 0.6015 0 1 + 57289 28061 36095 36113 65799 65799 0.12571751433074496 YPFHKWPM 8 Unmodified _YPFHKWPM_ 0 0 0 REV__THE1D-int_dup1477|chr9:77862032-77862897:-|2.161234748777636|0.0134663261145799|7.33|151.0|33|1|anti-sense REV__THE1D-int_dup1477|chr9:77862032-77862897:-|2.161234748777636|0.0134663261145799|7.33|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_1 5 553.2704467773438 2 553.26803 1104.52151 NaN NaN NaN NaN NaN NaN NaN 77.942 1 81.464 80.964 81.964 3.5221 0 0 0 0.38221 1 18572 18572 14.582 1.0738 1 + 57290 31856 36096 36114 65800 65800 -0.026572608750939253 YPFLLHVIY 9 Unmodified _YPFLLHVIY_ 0 0 0 L1MCa_dup4081|chr9:112323502-112324286:+|2.0258295311514263|0.0089326030567561|7.83|150.0|32|1|anti-sense L1MCa_dup4081|chr9:112323502-112324286:+|2.0258295311514263|0.0089326030567561|7.83|150.0|32|1|anti-sense L1MCa_dup4081|chr9:112323502-112324286:+|2.0258295311514263|0.0089326030567561|7.83|150.0|32|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.8270263671875 2 582.826235 1163.63792 NaN NaN NaN NaN NaN NaN NaN 65.203 1 68.383 67.883 68.883 3.1795 0 0 0 0.381 1 15645 15645 5.2307 0 1 57291 11806 36097 36115 65801 65801 0.06264380896459443 YPFPVLLF 8 Unmodified _YPFPVLLF_ 0 0 0 REV__L1MEj_dup381|chr2:241321149-241321894:-|4.4010490826501085|0.4497195726635231|3.29|151.0|33|1|anti-sense REV__L1MEj_dup381|chr2:241321149-241321894:-|4.4010490826501085|0.4497195726635231|3.29|151.0|33|1|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 498.2836608886719 2 498.283672 994.552791 -0.29681 -0.00014789 0.18958 9.4465E-05 -0.10723 -5.343E-05 498.2837907417142 12.083 0.12834 12.083 12.063 12.191 0 21 13 2 0 0 0 0.72333 1 15 15 0 0 1 31064 + 57292 28814 36098 36116 65802 65802 0.05529635430673352 YPFPYIFY 8 Unmodified _YPFPYIFY_ 0 0 0 REV__L1ME3G_dup8908|chr9:131408305-131408489:+|1.5878632855078605|0.0155136043121646|6.68|151.0|7|2|anti-sense REV__L1ME3G_dup8908|chr9:131408305-131408489:+|1.5878632855078605|0.0155136043121646|6.68|151.0|7|2|anti-sense MSMS UPN46_class_I_Rep_3 1 555.2701416015625 2 555.270761 1108.52697 NaN NaN NaN NaN NaN NaN NaN 15.553 1 15.553 15.053 16.053 0 0 0 0 0.40738 1 912 912 0.79363 0 1 + 57293 28208 36099 36117 65803 65803 -0.022952588116368133 YPFSCECI 8 Unmodified _YPFSCECI_ 0 0 0 L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|38|2|anti-sense L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|38|2|anti-sense L1ME2z_dup5467|chr15:34321429-34322104:+|1.0786597036088967|0.0707023873225|3.93|151.0|38|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 481.1949768066406 2 481.193339 960.372125 0.11549 5.5572E-05 -0.73067 -0.00035159 -0.61518 -0.00029602 481.1931011423385 46.851 0.37829 50.37 50.152 50.53 3.5192 28 25 2 0 0 0 0.82752 1 9206 9206 2.3027 1.5091 1 62500 57294 12570 36100 36118 65804 65804 -0.10964574280001216 YPFSSSFLTI 10 Unmodified _YPFSSSFLTI_ 0 0 0 HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|166|2|anti-sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|166|2|anti-sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|166|2|anti-sense MSMS UPN48_class_I_Rep_1 5 581.2951049804688 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 82.615 1 86.191 85.691 86.691 3.5753 0 0 0 0.53105 1 19735 19735 12.241 0 1 57295 8334 36101 36119 65805 65805 0.001511900376272024 YPFSSSFLTI 10 Unmodified _YPFSSSFLTI_ 0 0 0 HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|166|2|anti-sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|166|2|anti-sense HERVKC4-int_dup4|chr1:155693985-155697375:-|1.9793496392674093|0.1690430375128801|3.55|151.0|166|2|anti-sense MSMS UPN48_class_I_Rep_3 7 581.2954711914062 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 82.514 1 86.22 85.72 86.72 3.7066 0 0 0 0.53105 1 19560 19560 13.042 0 1 57296 8334 36101 36119 65806 65806 0.001511900376272024 YPFYALITF 9 Unmodified _YPFYALITF_ 0 0 0 Tigger3a_dup5055|chr19:49091387-49091619:+|1.1151979575945976|0.035742568300012|4.96|151.0|6|2|sense Tigger3a_dup5055|chr19:49091387-49091619:+|1.1151979575945976|0.035742568300012|4.96|151.0|6|2|sense Tigger3a_dup5055|chr19:49091387-49091619:+|1.1151979575945976|0.035742568300012|4.96|151.0|6|2|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 568.2747192382812 2 567.797143 1133.57973 0.50465 0.00028654 -3.6078 -0.0020485 -3.1031 -0.001762 567.7946774165331 72.479 0.22971 76.007 75.845 76.074 3.5288 25 20 2 0 0 0 0.11598 1 16864 16864 11.64 0 1 63335 57297 33362 36102 36120 65807 65807 0.018286992511548306 YPGAKAAEY 9 Unmodified _YPGAKAAEY_ 0 0 0 REV__ENSG00000140955|ENST00000315906|ADAD2 REV__ENSG00000140955|ENST00000315906|ADAD2 MSMS UPN48_class_I_Rep_1 5 485.24945068359375 2 485.23745 968.460347 NaN NaN NaN NaN NaN NaN NaN 33.057 1 36.583 36.083 37.083 3.5266 0 0 0 0.39598 1 5106 5106 1.6526 0.85899 1 + 57298 19363 36103 36121 65808 65808 -0.025144943735313063 YPGEFVRQI 9 Unmodified _YPGEFVRQI_ 0 0 0 REV__ENSG00000168758|ENST00000305476|SEMA4C REV__ENSG00000168758|ENST00000305476|SEMA4C MSMS UPN48_class_I_Rep_3 7 554.793212890625 2 554.792924 1107.57129 NaN NaN NaN NaN NaN NaN NaN 58.716 1 62.239 61.739 62.739 3.5231 0 0 0 0.38784 1 12750 12750 3.5965 0 1 + 57299 20279 36104 36122 65809 65809 0.021811453345662812 YPHIKELR 8 Unmodified _YPHIKELR_ 0 0 0 L1MB7_dup9774|chr8:47655904-47657171:+|1.7185036328601502|0.0615881860098536|4.8|151.0|1|1|sense L1MB7_dup9774|chr8:47655904-47657171:+|1.7185036328601502|0.0615881860098536|4.8|151.0|1|1|sense L1MB7_dup9774|chr8:47655904-47657171:+|1.7185036328601502|0.0615881860098536|4.8|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 528.671875 2 528.303458 1054.59236 NaN NaN NaN NaN NaN NaN NaN 93.79 1 97.411 96.911 97.911 3.6208 0 0 0 0.40738 1 22551 22551 0.79363 0 1 57300 10890 36105 36123 65810 65810 0.06725155434082808 YPHPNNRR 8 Unmodified _YPHPNNRR_ 0 0 0 L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|300|3|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|300|3|anti-sense L1PA4_dup9322|chr12:11290237-11296361:+|2.728521119943104|0.1100632210383451|4.63|151.0|300|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.2708740234375 2 527.270481 1052.52641 NaN NaN NaN NaN NaN NaN NaN 26.037 1 29.604 29.104 30.104 3.5667 0 0 0 0.40738 1 3130 3130 0.79363 0 1 57301 14403 36106 36124 65811 65811 0.002247593118909208 YPHVALQFLH 10 Unmodified _YPHVALQFLH_ 0 0 0 REV__MER21C_dup101|chr1:43843708-43844529:-|1.1500898816540472|0.0261340571662913|5.46|151.0|16|2|sense REV__MER21C_dup101|chr1:43843708-43844529:-|1.1500898816540472|0.0261340571662913|5.46|151.0|16|2|sense MSMS UPN48_class_I_Rep_1 5 612.8313598632812 2 612.82984 1223.64513 NaN NaN NaN NaN NaN NaN NaN 45.142 1 48.658 48.158 49.158 3.5162 0 0 0 0.53105 1 8674 8674 3.9444 0.66309 1 + 57302 31216 36107 36125 65812 65812 0.04225113496886479 YPIFMSRSS 9 Unmodified _YPIFMSRSS_ 0 0 0 REV__ENSG00000184814|ENST00000329447|PRR23B REV__ENSG00000184814|ENST00000329447|PRR23B MSMS UPN47_class_I_Rep_2 3 544.26806640625 2 544.265684 1086.51682 NaN NaN NaN NaN NaN NaN NaN 37.326 1 40.725 40.225 41.225 3.3988 0 0 0 0.39518 1 7105 7105 1.8442 0.19162 1 + 57303 20828 36108 36126 65813 65813 -0.022981898084935892 YPIIQNKS 8 Unmodified _YPIIQNKS_ 0 0 0 REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|11|1|sense REV__L1PA16_dup7243|chr8:132744330-132746188:+|1.353445825996611|0.0764721550271641|4.15|151.0|11|1|sense MSMS UPN47_class_I_Rep_3 4 481.76910400390625 2 481.768917 961.523281 NaN NaN NaN NaN NaN NaN NaN 37.838 1 41.079 40.579 41.579 3.2414 0 0 0 0.40527 1 7300 7300 3.5965 0.60125 1 + 57304 29404 36109 36127 65814 65814 0.040980714145121055 YPIKLGVRLL 10 Unmodified _YPIKLGVRLL_ 0 0 0 REV__L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|48|2|anti-sense REV__L1M3f_dup47|chr1:174907615-174908534:+|1.5127105809103103|0.0064549330176167|7.87|151.0|48|2|anti-sense MSMS UPN46_class_I_Rep_3 1 586.3820190429688 2 586.381709 1170.74886 NaN NaN NaN NaN NaN NaN NaN 106.26 1 106.26 105.76 106.76 0 0 0 0 0.53105 1 25914 25914 0.45834 0 1 + 57305 24338 36110 36128 65815 65815 0.1703202060455169 YPILESRI 8 Unmodified _YPILESRI_ 0 0 0 REV__ENSG00000070785.17,EIF2B3,chr1,-,I13.1,44880009,44881611|26|4.74|2|intron REV__ENSG00000070785.17,EIF2B3,chr1,-,I13.1,44880009,44881611|26|4.74|2|intron MSMS UPN48_class_I_Rep_1 5 495.7852783203125 2 495.784567 989.554582 NaN NaN NaN NaN NaN NaN NaN 112.9 1 116.54 116.04 117.04 3.6314 0 0 0 0.40581 1 27414 27414 2.8892 0 1 + 57306 17806 36111 36129 65816 65816 0.059386444485994616 YPILQLRA 8 Unmodified _YPILQLRA_ 0 0 0 ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 ENSG00000008300|ENST00000164024|CELSR3 MSMS UPN48_class_I_Rep_2 6 487.2944030761719 2 487.295102 972.575651 NaN NaN NaN NaN NaN NaN NaN 94.385 1 98.161 97.661 98.661 3.7761 0 0 0 0.40738 1 22441 22441 0.79363 0 1 57307 740 36112 36130 65817 65817 0.08826654548113311 YPIMGLLGQI 10 Unmodified _YPIMGLLGQI_ 0 0 0 L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|160|3|anti-sense L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|160|3|anti-sense L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|160|3|anti-sense MSMS UPN47_class_I_Rep_3 4 552.8123168945312 2 552.809728 1103.6049 NaN NaN NaN NaN NaN NaN NaN 46.215 1 49.459 48.959 49.959 3.2441 0 0 0 0.53105 1 9866 9866 3.5965 1.019 1 57308 14024 36113 36131 65818 65818 0.05724430782129275 YPIYKNFF 8 Unmodified _YPIYKNFF_ 0 0 0 L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|109|2|sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|109|2|sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|109|2|sense MSMS UPN47_class_I_Rep_2 3 546.7598876953125 2 546.28166 1090.54877 NaN NaN NaN NaN NaN NaN NaN 23.264 1 26.708 26.208 27.208 3.4447 0 0 0 0.40738 1 2903 2903 0.79363 0 1 57309 12019 36114 36132 65819 65819 0.007115459369288146 YPKATNRLS 9 Unmodified _YPKATNRLS_ 0 0 0 REV__AluJb_dup15266|chr2:74096810-74097121:+|1.0188423160046711|0.0464254213681194|4.46|151.0|10|3|sense REV__AluJb_dup15266|chr2:74096810-74097121:+|1.0188423160046711|0.0464254213681194|4.46|151.0|10|3|sense MSMS UPN47_class_I_Rep_1 2 525.302978515625 2 525.290548 1048.56654 NaN NaN NaN NaN NaN NaN NaN 60.649 1 64.03 63.53 64.53 3.3815 0 0 0 0.37476 1 14167 14167 6.7232 0 1 + 57310 16927 36115 36133 65820 65820 0.044202611917853574 YPKIMKIFS 9 Unmodified _YPKIMKIFS_ 0 0 0 L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|105|3|anti-sense;L1ME3A_dup15515|chr22:25683223-25684484:-|1.113764223669975|0.0815098896938384|3.77|151.0|79|3|anti-sense L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|105|3|anti-sense L1ME3_dup3046|chr5:170072204-170073735:-|2.887023248905337|0.0477373603544675|5.92|151.0|105|3|anti-sense MSMS UPN46_class_I_Rep_3 1 563.8218994140625 2 563.820095 1125.62564 NaN NaN NaN NaN NaN NaN NaN 48.298 1 48.298 47.798 48.798 0 0 0 0 0.37891 1 10051 10051 5.7319 1.4026 1 57311 12585 36116 36134 65821 65821 0.0678502116177242 YPKKFKLK 8 Unmodified _YPKKFKLK_ 0 0 0 REV__L1M5_dup16840|chr5:66090009-66090651:-|1.3910243128067736|0.0265636511990566|5.71|151.0|20|3|sense REV__L1M5_dup16840|chr5:66090009-66090651:-|1.3910243128067736|0.0265636511990566|5.71|151.0|20|3|sense MSMS UPN47_class_I_Rep_1 2 526.3374633789062 2 526.33677 1050.65899 NaN NaN NaN NaN NaN NaN NaN 87.129 1 90.766 90.266 91.266 3.6372 0 0 0 0.40746 1 21767 21767 0.69038 0 1 + 57312 24624 36117 36135 65822 65822 0.1356839099598801 YPKKKLHH 8 Unmodified _YPKKKLHH_ 0 0 0 REV__L1MB7_dup6503|chr5:71532767-71533448:-|1.00307612920423|0.0207647972819255|5.59|151.0|50|3|anti-sense REV__L1MB7_dup6503|chr5:71532767-71533448:-|1.00307612920423|0.0207647972819255|5.59|151.0|50|3|anti-sense MSMS UPN47_class_I_Rep_1 2 525.8135375976562 2 525.813993 1049.61343 NaN NaN NaN NaN NaN NaN NaN 113.12 1 116.69 116.19 117.19 3.572 0 0 0 0.40746 1 27904 27904 0.69038 0 1 + 57313 26294 36118 36136 65823 65823 0.09061165533603344 YPKKYIDKI 9 Unmodified _YPKKYIDKI_ 0 0 0 REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|37|3|sense REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 584.3427124023438 2 584.342249 1166.66995 0.51854 0.000303 -0.073883 -4.3173E-05 0.44465 0.00025983 584.3421670474555 57.76 0.90209 61.254 60.95 61.852 3.4942 130 63 3 0 0 0 0.19147 3 12514 12476;12514;12634 21.537 0 1 559080 + 57314 27729 36119 36137 65824;65825;65826 65825 0.09327748579585204 YPKKYIDKI 9 Unmodified _YPKKYIDKI_ 0 0 0 REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|37|3|sense REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 584.34228515625 2 584.342249 1166.66995 0.58019 0.00033903 0.011178 6.5315E-06 0.59137 0.00034556 584.3421297955294 57.749 0.87494 61.264 60.886 61.761 3.5142 144 61 3 0 0 0 0.081756 1 12559 12559 38.176 0 1 716110 + 57315 27729 36119 36137 65827 65827 0.09327748579585204 YPKKYIDKI 9 Unmodified _YPKKYIDKI_ 0 0 0 REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|37|3|sense REV__L1ME1_dup28298|chr18:26026241-26027366:+|1.1218988828049332|0.0493332587473592|4.51|151.0|37|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 584.3427734375 2 584.342249 1166.66995 0.42795 0.00025007 0.021808 1.2744E-05 0.44976 0.00026281 584.3421775509621 57.629 0.60432 61.161 61.055 61.659 3.5317 94 41 3 0 0 0 0.19147 4 12387 12387;12426;12518;12562 21.537 0 1 652030 + 57316 27729 36119 36137 65828;65829;65830;65831 65828 0.09327748579585204 YPKLLGHRL 9 Unmodified _YPKLLGHRL_ 0 0 0 REV__Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|70|3|sense REV__Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|70|3|sense MSMS UPN46_class_I_Rep_3 1 548.8353271484375 2 548.834926 1095.6553 NaN NaN NaN NaN NaN NaN NaN 26.884 1 26.884 26.384 27.384 0 0 0 0 0.40038 1 3913 3913 0.6015 0 1 + 57317 32530 36120 36138 65832 65832 0.11129721222141598 YPKLLHTI 8 Unmodified _YPKLLHTI_ 0 0 0 REV__L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|89|2|anti-sense REV__L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|89|2|anti-sense MSMS UPN47_class_I_Rep_2 3 492.7969055175781 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 39.57 1 42.948 42.448 43.448 3.3785 0 0 0 0.40581 1 7786 7786 2.8892 0 1 + 57318 29874 36121 36139 65833 65833 0.08795538690890226 YPKNKLFN 8 Unmodified _YPKNKLFN_ 0 0 0 REV__Charlie18a_dup423|chr2:233062839-233063076:-|2.354993416061789|0.003682312357646|9.32|151.0|21|3|anti-sense REV__Charlie18a_dup423|chr2:233062839-233063076:-|2.354993416061789|0.003682312357646|9.32|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_1 5 512.2828369140625 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 103.13 1 106.74 106.24 107.24 3.6164 0 0 0 0.40625 1 24861 24861 2.3027 0 1 + 57319 17293 36122 36140 65834 65834 0.04454064168453442 YPKTLLNL 8 Unmodified _YPKTLLNL_ 0 0 0 L1PB1_dup3336|chr4:102738976-102741897:+|3.545012672619818|0.0553278722366352|6.0|151.0|119|1|anti-sense;L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|84|1|anti-sense;L1PA5_dup5565|chr8:47400836-47405291:+|3.980840349583086|0.1795013591575756|4.47|151.0|248|3|anti-sense L1PB1_dup3336|chr4:102738976-102741897:+|3.545012672619818|0.0553278722366352|6.0|151.0|119|1|anti-sense L1PB1_dup3336|chr4:102738976-102741897:+|3.545012672619818|0.0553278722366352|6.0|151.0|119|1|anti-sense MSMS UPN46_class_I_Rep_3 1 481.33721923828125 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 118.8 1 118.8 118.3 119.3 0 0 0 0 0.40746 1 29501 29501 0.69038 0 1 57320 14495 36123 36141 65835 65835 0.08255832453971834 YPLFLFHF 8 Unmodified _YPLFLFHF_ 0 0 0 REV__L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|180|3|anti-sense REV__L1ME1_dup6951|chr3:158371248-158373640:-|1.0281484051180505|0.0111791709634162|6.52|149.0|180|3|anti-sense MSMS UPN46_class_I_Rep_3 1 542.2880859375 2 542.286746 1082.55894 NaN NaN NaN NaN NaN NaN NaN 20.165 1 20.165 19.665 20.665 0 0 0 0 0.40738 1 2049 2049 0.79363 0 1 + 57321 27430 36124 36142 65836 65836 0.02096153662182587 YPLFLRWLFLY 11 Unmodified _YPLFLRWLFLY_ 0 0 0 REV__L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|134|2|anti-sense REV__L1PBa_dup706|chr4:168973842-168976361:-|1.427871305388097|0.0461483894800749|4.95|151.0|134|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.28924560546875 3 510.955108 1529.84349 -0.22147 -0.00011316 -0.071106 -3.6332E-05 -0.29258 -0.00014949 511.2894047040874 26.161 0.31392 29.923 29.755 30.069 3.7624 40 24 2 0 0 0 0.68132 1 3702 3702 0.40827 0 1 70976 + 57322 30659 36125 36143 65837 65837 0.09976534355882904 YPLFPFIRF 9 Unmodified _YPLFPFIRF_ 0 0 0 REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|50|2|sense REV__HERVI-int_dup36|chr8:8359471-8362615:-|1.3748325590129364|0.0966083537161015|3.83|149.0|50|2|sense MSMS UPN48_class_I_Rep_1 5 600.3340454101562 2 600.334227 1198.6539 NaN NaN NaN NaN NaN NaN NaN 65.753 1 69.205 68.705 69.705 3.4516 0 0 0 0.40038 1 14982 14982 0.6015 0 1 + 57323 23711 36126 36144 65838 65838 0.06252087133361783 YPLIKCLIFK 10 Unmodified _YPLIKCLIFK_ 0 0 0 L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|10|2|sense L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|10|2|sense L1ME1_dup1767|chr1:176062302-176063047:+|1.6444995672225304|0.0260997293987754|5.98|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 619.3751831054688 2 619.372495 1236.73044 NaN NaN NaN NaN NaN NaN NaN 92.868 1 96.273 95.773 96.773 3.4052 0 0 0 0.53105 1 23172 23172 0 0 1 57324 12260 36127 36145 65839 65839 0.12154142638314624 YPLLIWMDL 9 Unmodified _YPLLIWMDL_ 0 0 0 ENST00000461745.5_2_3:77089697-77089820:+|nuORF ENST00000461745.5_2_3:77089697-77089820:+|nuORF ENST00000461745.5_2_3:77089697-77089820:+|nuORF MSMS UPN48_class_I_Rep_3 7 582.3125610351562 2 582.312103 1162.60965 NaN NaN NaN NaN NaN NaN NaN 24.345 1 28.114 27.614 28.614 3.769 0 0 0 0.4007 1 2803 2803 0.52476 0 1 57325 6863 36128 36146 65840 65840 0.03485314924864724 YPLPVPQLY 9 Unmodified _YPLPVPQLY_ 0 0 0 THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|31|2|sense THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|31|2|sense THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|31|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 545.25390625 2 545.302593 1088.59063 0.44426 0.00024226 0.28494 0.00015538 0.7292 0.00039764 545.3018775284306 58.717 0.29387 62.134 61.918 62.211 3.4171 39 18 3 0 0 0 0.10341 1 13516 13516 16.942 0 1 102820 57326 32960 36129 36147 65841 65841 0.049881016254630595 YPLPVPQLY 9 Unmodified _YPLPVPQLY_ 0 0 0 THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|31|2|sense THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|31|2|sense THE1D-int_dup2243|chr16:72319249-72320859:-|1.3557838646846356|0.2922779204009001|2.21|151.0|31|2|sense MULTI-MATCH UPN46_class_I_Rep_3 1 2 545.302593 1088.59063 0.31085 0.00016951 -0.20474 -0.00011164 0.10611 5.7862E-05 545.3025785426048 62.133 0.053318 62.133 62.11 62.163 0 -0.00083243 -0.00045503 NaN 16.942 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 63397 57327 32960 36129 36147 0.049881016254630595 YPLTVDGTVF 10 Unmodified _YPLTVDGTVF_ 0 0 0 ENSG00000172828|ENST00000303334|CES3 ENSG00000172828|ENST00000303334|CES3 ENSG00000172828|ENST00000303334|CES3 MSMS UPN47_class_I_Rep_1 2 556.2880859375 2 556.28714 1110.55973 NaN NaN NaN NaN NaN NaN NaN 102.72 1 106.5 106 107 3.7788 0 0 0 0.53105 1 25275 25275 3.5965 1.2938 1 57328 4592 36130 36148 65842 65842 0.008869035205634646 YPLYEMILKL 10 Unmodified _YPLYEMILKL_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS UPN47_class_I_Rep_2 3 641.8600463867188 2 641.859418 1281.70428 0.63486 0.00040749 -0.28595 -0.00018354 0.34891 0.00022395 641.8588763883355 107.26 0.40417 110.79 110.51 110.91 3.5345 124 57 4 0 0 0 0.56309 1 25918 25918 1.6526 0 1 682980 + 57329 18060 36131 36149 65843 65843 0.07469828676198631 YPLYPPLLN 9 Unmodified _YPLYPPLLN_ 0 0 0 REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|51|3|sense REV__L1PREC2_dup4157|chr9:96793326-96795184:-|2.370809812276559|0.095877866616927|4.63|151.0|51|3|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 545.2540893554688 2 545.302593 1088.59063 0.32774 0.00017872 -2.1697 -0.0011831 -1.8419 -0.0010044 545.3013742265719 58.249 0.32908 61.415 61.282 61.611 3.1658 32 19 2 0 0 0 0.11425 1 13568 13568 7.9102 0.62092 1 146690 + 57330 30712 36132 36150 65844 65844 0.049881016254630595 YPMILLLME 9 Unmodified _YPMILLLME_ 0 0 0 MER89-int_dup116|chr4:25163748-25165414:+|2.160561164515406|0.0514630646176575|5.39|150.0|65|1|anti-sense MER89-int_dup116|chr4:25163748-25165414:+|2.160561164515406|0.0514630646176575|5.39|150.0|65|1|anti-sense MER89-int_dup116|chr4:25163748-25165414:+|2.160561164515406|0.0514630646176575|5.39|150.0|65|1|anti-sense MSMS UPN48_class_I_Rep_3 7 561.795166015625 2 561.800514 1121.58648 NaN NaN NaN NaN NaN NaN NaN 81.05 1 84.714 84.214 85.214 3.6635 0 0 0 0.39428 1 19185 19185 2.0598 0 1 57331 16226 36133 36151 65845 65845 0.03054552815910938 YPNELKTEL 9 Unmodified _YPNELKTEL_ 0 0 0 L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 553.7900390625 2 553.790047 1105.56554 0.39247 0.00021734 0.038817 2.1496E-05 0.43128 0.00023884 553.7899273897068 64.437 0.90509 67.793 67.421 68.326 3.3557 165 85 2 0 0 0 0.090251 2 15294 15294;15329 36.127 0 1 404980 57332 11084 36134 36152 65846;65847 65846 0.01698002032230761 YPNELKTEL 9 Unmodified _YPNELKTEL_ 0 0 0 L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 553.7890014648438 2 553.790047 1105.56554 0.38382 0.00021256 0.044225 2.4491E-05 0.42805 0.00023705 553.7899914781723 64.83 1.0107 68.086 67.594 68.605 3.2556 156 80 3 0 0 0 0.44742 1 15582 15582 5.2969 0 1 475820 57333 11084 36134 36152 65848 65848 0.01698002032230761 YPNELKTEL 9 Unmodified _YPNELKTEL_ 0 0 0 L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense L1MC1_dup11090|chr15:42972671-42973170:-|1.1924593948781848|0.0838264870589775|3.83|151.0|17|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 553.790047 1105.56554 0.39247 0.00021734 0.038817 2.1496E-05 0.43128 0.00023884 553.7899273897068 64.437 0.90509 67.793 67.421 68.326 3.3557 0 0 NaN 36.127 165 85 2 NaN NaN NaN NaN 0 NaN NaN 0 404980 57334 11084 36134 36152 0.01698002032230761 YPNERFELL 9 Unmodified _YPNERFELL_ 0 0 0 ENSG00000163960|ENST00000296328|UBXN7 ENSG00000163960|ENST00000296328|UBXN7 ENSG00000163960|ENST00000296328|UBXN7 MULTI-MSMS UPN47_class_I_Rep_1 2 590.8035888671875 2 590.803488 1179.59242 0.4165 0.00024607 -0.36532 -0.00021583 0.051174 3.0234E-05 590.8032487243993 59.556 0.49881 62.954 62.751 63.25 3.3982 47 31 2 0 0 0 0.39745 3 13904 13851;13858;13904 8.1555 8.1555 1 85678 57335 4063 36135 36153 65849;65850;65851 65851 0.009811106434199246 YPNERFELL 9 Unmodified _YPNERFELL_ 0 0 0 ENSG00000163960|ENST00000296328|UBXN7 ENSG00000163960|ENST00000296328|UBXN7 ENSG00000163960|ENST00000296328|UBXN7 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 590.803488 1179.59242 0.36468 0.00021546 -0.079079 -4.672E-05 0.28561 0.00016874 590.8034734592719 59.966 0.39059 63.131 62.9 63.29 3.1651 0.088264 0.00018053 NaN 8.1555 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 78512 57336 4063 36135 36153 0.009811106434199246 YPNLIITY 8 Unmodified _YPNLIITY_ 0 0 0 L1MA5_dup3584|chr13:72751151-72751876:+|1.599696680889078|0.252597397393615|2.66|150.0|27|3|sense L1MA5_dup3584|chr13:72751151-72751876:+|1.599696680889078|0.252597397393615|2.66|150.0|27|3|sense L1MA5_dup3584|chr13:72751151-72751876:+|1.599696680889078|0.252597397393615|2.66|150.0|27|3|sense MSMS UPN46_class_I_Rep_3 1 498.7716369628906 2 498.773668 995.532783 NaN NaN NaN NaN NaN NaN NaN 96.524 1 96.524 96.024 97.024 0 0 0 0 0.40604 1 23472 23472 2.5775 0 1 57337 9904 36136 36154 65852 65852 0.03483839700027147 YPNYHGTH 8 Unmodified _YPNYHGTH_ 0 0 0 REV__LTR70_dup111|chr19:21825238-21825771:-|2.0836500770846347|0.1284612524367389|4.02|151.0|4|1|sense REV__LTR70_dup111|chr19:21825238-21825771:-|2.0836500770846347|0.1284612524367389|4.02|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 494.28955078125 2 494.717216 987.419879 NaN NaN NaN NaN NaN NaN NaN 75.907 1 79.164 78.664 79.664 3.2573 0 0 0 0.40746 1 18854 18854 0.69038 0 1 + 57338 30998 36137 36155 65853 65853 -0.07433415973287083 YPPLECHT 8 Unmodified _YPPLECHT_ 0 0 0 L1MC3_dup162|chr1:52469070-52469608:+|1.9029222025660684|0.1241533575614651|3.94|151.0|35|2|anti-sense L1MC3_dup162|chr1:52469070-52469608:+|1.9029222025660684|0.1241533575614651|3.94|151.0|35|2|anti-sense L1MC3_dup162|chr1:52469070-52469608:+|1.9029222025660684|0.1241533575614651|3.94|151.0|35|2|anti-sense MSMS UPN47_class_I_Rep_3 4 480.21612548828125 2 480.218203 958.421853 NaN NaN NaN NaN NaN NaN NaN 117.94 1 121.37 120.87 121.87 3.4238 0 0 0 0.40738 1 29074 29074 0.79363 0 1 57339 11317 36138 36156 65854 65854 -0.059021232797022094 YPPLITFF 8 Unmodified _YPPLITFF_ 0 0 0 HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|24|2|sense HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|24|2|sense HERVH-int_dup4195|chr11:14524834-14527810:+|1.8669186495897456|0.2066927677889815|3.18|151.0|24|2|sense MSMS UPN48_class_I_Rep_1 5 498.7864990234375 2 499.273304 996.532055 NaN NaN NaN NaN NaN NaN NaN 70.125 1 73.585 73.085 74.085 3.4598 0 0 0 0.40625 1 16319 16319 2.3027 0.24298 1 57340 8152 36139 36157 65855 65855 0.033650450509981056 YPPPHQVF 8 Unmodified _YPPPHQVF_ 0 0 0 ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENST00000540158.1_1_12:109535484-109537104:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 492.7518310546875 2 492.750527 983.486502 -0.25855 -0.0001274 -1.6598 -0.00081784 -1.9183 -0.00094525 492.7505781951261 39.351 0.89063 43.017 42.594 43.485 3.6661 146 63 4 0 0 0 0.82752 1 7645 7645 13.508 2.684 1 64272 57341 1156 36140 36158 65856 65856 -0.005901804113932485 YPPPHQVF 8 Unmodified _YPPPHQVF_ 0 0 0 ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENST00000540158.1_1_12:109535484-109537104:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 492.7505798339844 2 492.750527 983.486502 -0.11503 -5.6679E-05 0.14487 7.1384E-05 0.029843 1.4705E-05 492.750417041678 39.73 0.84909 43.109 42.671 43.52 3.3785 73 54 2 0 0 0 0.82752 3 7772 7772;7812;7876 13.508 2.684 1 64107 57342 1156 36140 36158 65857;65858;65859 65857 -0.005901804113932485 YPPPHQVF 8 Unmodified _YPPPHQVF_ 0 0 0 ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENST00000540158.1_1_12:109535484-109537104:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 493.2518310546875 2 492.750527 983.486502 -0.27178 -0.00013392 0.25019 0.00012328 -0.021594 -1.064E-05 492.7505180030577 39.701 0.63435 42.939 42.7 43.334 3.2379 69 44 2 0 0 0 0.82752 2 7873 7873;7945 9.3474 1.4373 1 86856 57343 1156 36140 36158 65860;65861 65860 -0.005901804113932485 YPPPHQVF 8 Unmodified _YPPPHQVF_ 0 0 0 ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENST00000540158.1_1_12:109535484-109537104:+|nuORF MSMS UPN47_class_I_Rep_3 4 492.7510681152344 2 492.750527 983.486502 NaN NaN NaN NaN NaN NaN NaN 40.119 1 43.356 42.856 43.856 3.2372 0 0 0 0.40364 1 8002 8002 5.7604 0 1 57344 1156 36140 36158 65862 65862 -0.005901804113932485 YPPVTTSLL 9 Unmodified _YPPVTTSLL_ 0 0 0 REV__ENST00000300417.10_1_9:130265489-130265732:+|nuORF REV__ENST00000300417.10_1_9:130265489-130265732:+|nuORF MSMS UPN47_class_I_Rep_3 4 495.78057861328125 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 83.1 1 86.45 85.95 86.95 3.35 0 0 0 0.35339 1 20837 20837 7.9102 0 1 + 57345 21668 36141 36159 65863 65863 0.04815822354487409 YPPWKWQY 8 Unmodified _YPPWKWQY_ 0 0 0 REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|126|3|sense REV__ERVL-int_dup749|chr16:23992260-23997897:+|6.549206396107273|0.1198550961914127|5.77|151.0|126|3|sense MSMS UPN47_class_I_Rep_2 3 584.299560546875 2 584.284734 1166.55492 NaN NaN NaN NaN NaN NaN NaN 42.267 1 45.628 45.128 46.128 3.3611 0 0 0 0.40364 1 8601 8601 5.7604 0.52976 1 + 57346 23308 36142 36160 65864 65864 -0.021699358315345307 YPQFYDYLHWF 11 Unmodified _YPQFYDYLHWF_ 0 0 0 Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|56|1|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|56|1|anti-sense Tigger2_dup1204|chr6:154765882-154767529:-|1.3393105817610047|0.0408020658110946|5.04|151.0|56|1|anti-sense MSMS UPN47_class_I_Rep_1 2 527.240966796875 3 526.906594 1577.69795 NaN NaN NaN NaN NaN NaN NaN 29.134 1 32.891 32.391 33.391 3.7578 0 0 0 0.38417 1 4584 4584 1.3296 0.82369 1 57347 33272 36143 36161 65865 65865 -0.06778973230984775 YPRARDGLRYS 11 Unmodified _YPRARDGLRYS_ 0 0 0 REV__AluJb_dup41635|chr6:32588176-32588468:+|1.4204809200495505|0.3022013313908192|2.23|150.0|9|3|sense REV__AluJb_dup41635|chr6:32588176-32588468:+|1.4204809200495505|0.3022013313908192|2.23|150.0|9|3|sense MSMS UPN47_class_I_Rep_1 2 451.9068908691406 3 451.905587 1352.69493 NaN NaN NaN NaN NaN NaN NaN 18.155 1 21.705 21.205 22.205 3.5504 0 0 0 0.38417 1 1467 1467 1.0136 0.23704 1 + 57348 16947 36144 36162 65866 65866 0.03269196434894184 YPRKGKQTR 9 Unmodified _YPRKGKQTR_ 0 0 0 nc|ENSG00000197901|Q4U2R8-4|SLC22A6;nc|ENSG00000197901|Q4U2R8|SLC22A6 nc|ENSG00000197901|Q4U2R8-4|SLC22A6 nc|ENSG00000197901|Q4U2R8-4|SLC22A6 MULTI-MSMS UPN47_class_I_Rep_3 4 567.3309326171875 2 567.330539 1132.64652 0.47367 0.00026873 -0.14877 -8.4399E-05 0.32491 0.00018433 567.3302785217568 81.63 0.88196 84.953 84.65 85.532 3.3231 129 97 2 0 0 0 0.48643 1 20373 20373 2.0598 0 1 168080 57349 16797 36145 36163 65867 65867 0.08550747585650242 YPRKKFYV 8 Unmodified _YPRKKFYV_ 0 0 0 L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|60|3|sense L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|60|3|sense L1MB7_dup5681|chr4:78803960-78805688:-|1.2944262007794438|0.0175349702056071|6.21|151.0|60|3|sense MSMS UPN48_class_I_Rep_2 6 550.8164672851562 2 550.816202 1099.61785 NaN NaN NaN NaN NaN NaN NaN 39.493 1 43.222 42.722 43.722 3.7297 0 0 0 0.40581 1 7014 7014 2.8892 0 1 57350 10851 36146 36164 65868 65868 0.07202629956509554 YPRKLPQG 8 Unmodified _YPRKLPQG_ 0 0 0 REV__L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|24|2|sense REV__L1MD2_dup9662|chr18:21009853-21011441:-|3.9303550517678856|0.0554790870274924|6.15|151.0|24|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 479.7770080566406 2 479.777077 957.5396 -0.11797 -5.6602E-05 0.14765 7.0839E-05 0.029675 1.4238E-05 479.77701064152956 46.469 0.65767 50.169 49.942 50.6 3.6999 68 43 2 0 0 0 0.82752 1 9962 9962 2.5775 0 1 131990 + 57351 27459 36147 36165 65869 65869 0.059131973712851504 YPRLVSDL 8 Unmodified _YPRLVSDL_ 0 0 0 L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|82|2|anti-sense;MER21C_dup2685|chr8:73868030-73868798:+|2.4559549359369446|0.0093575654317874|8.04|151.0|42|2|anti-sense L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|82|2|anti-sense L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|82|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 481.7686767578125 2 481.768917 961.523281 -0.20624 -9.9359E-05 -0.12142 -5.8497E-05 -0.32766 -0.00015786 481.7688681415983 37.657 0.44086 41.045 40.854 41.295 3.3879 52 35 2 0 0 0 0.82752 2 7169 7169;7210 6.2058 0.47393 1 57483 57352 8848 36148 36166 65870;65871 65870 0.04098071414500737 YPRREGFV 8 Unmodified _YPRREGFV_ 0 0 0 REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF MSMS UPN46_class_I_Rep_3 1 512.2710571289062 2 512.272158 1022.52976 NaN NaN NaN NaN NaN NaN NaN 100.09 1 100.09 99.592 100.59 0 0 0 0 0.40625 1 24396 24396 2.3027 1.5091 1 + 57353 22681 36149 36167 65872 65872 0.019400093658987316 YPRSAPFR 8 Unmodified _YPRSAPFR_ 0 0 0 REV__MER51A_dup897|chr20:8424748-8425415:-|1.412327586877392|0.0082654927153132|7.42|149.0|45|3|anti-sense REV__MER51A_dup897|chr20:8424748-8425415:-|1.412327586877392|0.0082654927153132|7.42|149.0|45|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 497.2667541503906 2 497.266876 992.519199 0.16639 8.2741E-05 -0.16758 -8.3334E-05 -0.0011916 -5.9252E-07 497.2667742606035 40.184 1.0163 43.835 43.604 44.62 3.6509 160 96 2 0 0 0 0.82752 1 7102 7102 4.756 4.756 1 194490 + 57354 31395 36150 36168 65873 65873 0.022640267114638846 YPSEMITTVVV 11 Unmodified _YPSEMITTVVV_ 0 0 0 REV__ENSG00000152578|ENST00000282499|GRIA4 REV__ENSG00000152578|ENST00000282499|GRIA4 MSMS UPN48_class_I_Rep_3 7 619.8209228515625 2 619.820489 1237.62643 NaN NaN NaN NaN NaN NaN NaN 15.235 1 18.775 18.275 19.275 3.5392 0 0 0 0.38417 1 567 567 0 0 1 + 57355 19687 36151 36169 65874 65874 0.017117710201318914 YPSIWFKY 8 Unmodified _YPSIWFKY_ 0 0 0 REV__L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|58|2|anti-sense REV__L1MB4_dup6579|chr13:27063840-27064975:+|1.1311377542314112|0.0296772581822893|5.25|151.0|58|2|anti-sense MSMS UPN46_class_I_Rep_3 1 552.2817993164062 2 552.28166 1102.54877 NaN NaN NaN NaN NaN NaN NaN 44.801 1 44.801 44.301 45.301 0 0 0 0 0.40604 1 9056 9056 2.5775 0.51773 1 + 57356 26005 36152 36170 65875 65875 0.001595459369582386 YPSYTSNLY 9 Unmodified _YPSYTSNLY_ 0 0 0 REV__HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|58|1|anti-sense REV__HAL1_dup8430|chr6:17979612-17981020:+|2.3712225032177185|0.0479069962602001|5.63|150.0|58|1|anti-sense MSMS UPN48_class_I_Rep_2 6 554.2522583007812 2 554.253297 1106.49204 NaN NaN NaN NaN NaN NaN NaN 66.494 1 69.98 69.48 70.48 3.4866 0 0 0 0.39518 1 15195 15195 1.8442 1.0506 1 + 57357 23439 36153 36171 65876 65876 -0.05694546410222756 YPTDKRTLL 9 Unmodified _YPTDKRTLL_ 0 0 0 REV__nc|ENSG00000180953|Q9HBF5|ST20 REV__nc|ENSG00000180953|Q9HBF5|ST20 MULTI-MSMS UPN47_class_I_Rep_3 4 554.305419921875 2 553.813856 1105.61316 -0.050761 -2.8112E-05 0.39396 0.00021818 0.34319 0.00019007 553.8137395186986 39.036 0.78481 42.274 41.939 42.724 3.238 73 54 2 0 0 0 0.43982 1 7649 7649 5.7319 0 1 59363 + 57358 32074 36154 36172 65877 65877 0.06457701023100526 YPTFLRGF 8 Unmodified _YPTFLRGF_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 500.7652893066406 2 500.766178 999.517802 0.31051 0.00015549 0.62784 0.0003144 0.93835 0.0004699 500.7656530270635 115.82 0.050415 115.82 115.8 115.85 0 5 3 2 0 0 0 0.82752 1 28659 28659 2.3027 0 1 23390 57359 9169 36155 36173 65878 65878 0.01802392622721527 YPTFLRGF 8 Unmodified _YPTFLRGF_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.76611328125 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 58.78 1 62.197 61.697 62.697 3.4171 0 0 0 0.40798 1 13599 13599 0 0 1 57360 9169 36155 36173 65879 65879 0.01802392622721527 YPTFLRGF 8 Unmodified _YPTFLRGF_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 500.7664489746094 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 41.22 1 44.726 44.226 45.226 3.506 0 0 0 0.40738 1 7486 7486 0.79363 0 1 57361 9169 36155 36173 65880 65880 0.01802392622721527 YPTFLRGF 8 Unmodified _YPTFLRGF_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_3 7 500.7663879394531 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 53.903 1 57.486 56.986 57.986 3.5836 0 0 0 0.40738 1 11279 11279 0.79363 0 1 57362 9169 36155 36173 65881 65881 0.01802392622721527 YPTFLRGF 8 Unmodified _YPTFLRGF_ 0 0 0 L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense L1M5_dup41940|chr13:77182778-77183541:-|1.355988971063704|0.0573246755251529|4.56|151.0|42|2|anti-sense MULTI-MATCH-MSMS UPN46_class_I_Rep_3 1 2 500.766178 999.517802 0.31051 0.00015549 0.62784 0.0003144 0.93835 0.0004699 500.7656530270635 115.82 0.050415 115.82 115.8 115.85 0 0 0 NaN 2.3027 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 23390 57363 9169 36155 36173 0.01802392622721527 YPVEIHEY 8 Unmodified _YPVEIHEY_ 0 0 0 ENST00000485709.1_1_2:68273401-68290109:-|nuORF;ENSG00000197223|ENST00000410067|C1D ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENST00000485709.1_1_2:68273401-68290109:-|nuORF MSMS UPN46_class_I_Rep_3 1 525.2500610351562 2 525.250557 1048.48656 NaN NaN NaN NaN NaN NaN NaN 48.9 1 48.9 48.4 49.4 0 0 0 0 0.0003565 1 10227 10227 60.39 24.263 1 57364 5357 36156 36174 65882 65882 -0.03574225202055459 YPVFDESVIDI 11 Unmodified _YPVFDESVIDI_ 0 0 0 REV__ENST00000445718.1_1_X:134345908-134349160:+|nuORF REV__ENST00000445718.1_1_X:134345908-134349160:+|nuORF MSMS UPN47_class_I_Rep_2 3 432.8851318359375 3 432.883455 1295.62853 NaN NaN NaN NaN NaN NaN NaN 99.925 1 103.42 102.92 103.92 3.4974 0 0 0 0.38417 1 24448 24448 0.40827 0 1 + 57365 22357 36157 36175 65883 65883 -0.007454769703599595 YPVFDESVIDI 11 Unmodified _YPVFDESVIDI_ 0 0 0 REV__ENST00000445718.1_1_X:134345908-134349160:+|nuORF REV__ENST00000445718.1_1_X:134345908-134349160:+|nuORF MSMS UPN48_class_I_Rep_1 5 432.88531494140625 3 432.883455 1295.62853 NaN NaN NaN NaN NaN NaN NaN 99.708 1 103.31 102.81 103.81 3.6065 0 0 0 0.38417 1 24068 24068 0.40827 0 1 + 57366 22357 36157 36175 65884 65884 -0.007454769703599595 YPVFNPLI 8 Unmodified _YPVFNPLI_ 0 0 0 REV__L1ME3A_dup13210|chr16:48378381-48378610:+|1.039603315620585|0.0639751192510928|4.02|151.0|14|1|anti-sense REV__L1ME3A_dup13210|chr16:48378381-48378610:+|1.039603315620585|0.0639751192510928|4.02|151.0|14|1|anti-sense MSMS UPN47_class_I_Rep_3 4 481.76776123046875 2 481.770929 961.527304 NaN NaN NaN NaN NaN NaN NaN 37.951 1 41.193 40.693 41.693 3.2414 0 0 0 0.40404 1 7334 7334 5.2307 0 1 + 57367 28000 36158 36176 65885 65885 0.04500160908230555 YPVFSNGRLQ 10 Unmodified _YPVFSNGRLQ_ 0 0 0 Cheshire_dup740|chr11:68521633-68522878:-|1.7966853866594077|0.0168266087311222|6.74|150.0|75|2|anti-sense Cheshire_dup740|chr11:68521633-68522878:-|1.7966853866594077|0.0168266087311222|6.74|150.0|75|2|anti-sense Cheshire_dup740|chr11:68521633-68522878:-|1.7966853866594077|0.0168266087311222|6.74|150.0|75|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 590.8094482421875 2 590.809105 1179.60366 0.36943 0.00021826 0.24316 0.00014366 0.61259 0.00036193 590.8091775619381 53.382 0.81132 56.965 56.56 57.371 3.5836 126 57 3 0 0 0 0.51508 1 11193 11193 10.151 1.4052 1 361920 57368 560 36159 36177 65886 65886 0.021039327375547145 YPVHHVRL 8 Unmodified _YPVHHVRL_ 0 0 0 L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|4|1|sense L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|4|1|sense L1MCa_dup4589|chrX:136716241-136718370:+|7.069558481180039|0.0743814316815374|6.57|151.0|4|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.2889709472656 2 510.790518 1019.56648 0.2474 0.00012637 -2.0512 -0.0010477 -1.8038 -0.00092137 511.2907556289332 58.216 0.20878 61.654 61.603 61.812 3.437 22 14 2 0 0 0 0.82752 1 13442 13442 2.5775 0 1 42771 57369 11815 36160 36178 65887 65887 0.05748305982456259 YPVHPQFP 8 Unmodified _YPVHPQFP_ 0 0 0 REV__nc|ENSG00000149657|Q9BX40-2|LSM14B REV__nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS UPN47_class_I_Rep_2 3 492.750244140625 2 492.750527 983.486502 -0.11503 -5.6679E-05 0.14487 7.1384E-05 0.029843 1.4705E-05 492.750417041678 39.73 0.84909 43.109 42.671 43.52 3.3785 73 54 2 0 0 0 0.82752 1 7940 7940 2.5775 0 1 64107 + 57370 19625 36161 36179 65888 65888 -0.005901804113932485 YPVIPAPFP 9 Unmodified _YPVIPAPFP_ 0 0 0 L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|229|2|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|229|2|anti-sense L1PA13_dup1157|chr3:174452329-174457545:+|5.357449401342758|0.1858096627507961|4.85|150.0|229|2|anti-sense MSMS UPN47_class_I_Rep_1 2 500.77947998046875 2 500.778754 999.542954 NaN NaN NaN NaN NaN NaN NaN 56.891 1 60.349 59.849 60.849 3.4572 0 0 0 0.22893 1 13028 13028 14.582 0 1 57371 13727 36162 36180 65889 65889 0.04316447425264869 YPVLHLPSILK 11 Unmodified _YPVLHLPSILK_ 0 0 0 ENST00000309575.4_1_3:142841481-142841589:+|nuORF ENST00000309575.4_1_3:142841481-142841589:+|nuORF ENST00000309575.4_1_3:142841481-142841589:+|nuORF MSMS UPN47_class_I_Rep_2 3 640.3931884765625 2 640.392273 1278.76999 NaN NaN NaN NaN NaN NaN NaN 51.32 1 54.659 54.159 55.159 3.3386 0 0 0 0.38417 1 11358 11358 1.4819 1.0812 1 57372 6104 36163 36181 65890 65890 0.14175985913402656 YPVLYGTLW 9 Unmodified _YPVLYGTLW_ 0 0 0 REV__Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|226|1|anti-sense REV__Harlequin-int_dup110|chr2:187510952-187515862:+|1.208215524892102|0.1230497372073712|3.3|150.0|226|1|anti-sense MSMS UPN46_class_I_Rep_3 1 556.2802734375 2 556.294768 1110.57498 NaN NaN NaN NaN NaN NaN NaN 104.66 1 104.66 104.16 105.16 0 0 0 0 0.39428 1 25544 25544 2.0598 0.21551 1 + 57373 23507 36164 36182 65891 65891 0.024118151084394412 YPVMCHPVVY 10 Unmodified _YPVMCHPVVY_ 0 0 0 REV__L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|245|1|anti-sense REV__L1PA7_dup10191|chr12:11108365-11114661:+|5.156540571506758|0.160745155000146|5.0|151.0|245|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 604.2850341796875 2 604.285563 1206.55657 -0.067217 -4.0618E-05 -0.37482 -0.0002265 -0.44204 -0.00026712 604.2852597074566 22.781 0.68443 26.485 26.115 26.799 3.7042 88 63 2 0 0 0 0.53188 1 2720 2720 7.9102 0.80843 1 114500 + 57374 29969 36165 36183 65892 65892 -0.038443861294354065 YPVMHFCWI 9 Unmodified _YPVMHFCWI_ 0 0 0 REV__L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|225|1|anti-sense REV__L1PA4_dup5232|chr7:39961636-39967144:-|6.286075483032179|0.1714796589066622|5.2|151.0|225|1|anti-sense MSMS UPN48_class_I_Rep_1 5 598.2735595703125 2 598.274998 1194.53544 NaN NaN NaN NaN NaN NaN NaN 70.413 1 73.873 73.373 74.373 3.4598 0 0 0 0.39326 1 16407 16407 2.3027 0.24298 1 + 57375 29647 36166 36184 65893 65893 -0.054043514383010915 YPVSFVTY 8 Unmodified _YPVSFVTY_ 0 0 0 REV__L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|150|3|sense REV__L1PA4_dup1095|chr2:73538401-73544525:+|2.186243550459526|0.0666380258747024|5.04|151.0|150|3|sense MSMS UPN48_class_I_Rep_2 6 488.290283203125 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 110.47 1 114.14 113.64 114.64 3.669 0 0 0 0.40604 1 26281 26281 2.5775 0 1 + 57376 29597 36167 36185 65894 65894 -0.013324222253800144 YPVYSHVII 9 Unmodified _YPVYSHVII_ 0 0 0 L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|93|2|sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|93|2|sense L1MA2_dup2806|chr7:8027507-8031699:+|2.7721627752091456|0.0974092714167206|4.83|151.0|93|2|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 546.281494140625 2 545.800217 1089.58588 0.01757 9.5897E-06 -0.71304 -0.00038918 -0.69547 -0.00037959 545.7997618232309 33.347 0.6547 36.787 36.481 37.136 3.4398 66 47 2 0 0 0 0.11959 1 5923 5923 7.9102 0 1 62202 57377 9360 36168 36186 65895 65895 0.044672174827155686 YPWKSFVWAS 10 Unmodified _YPWKSFVWAS_ 0 0 0 HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|110|1|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|110|1|anti-sense HERVK14-int_dup309|chr15:76263325-76266621:+|5.765858906969841|0.0529296876548364|6.77|151.0|110|1|anti-sense MSMS UPN48_class_I_Rep_1 5 635.8185424804688 2 635.816399 1269.61824 NaN NaN NaN NaN NaN NaN NaN 61.557 1 65.025 64.525 65.525 3.4678 0 0 0 0.53105 1 13705 13705 1.4819 0.15237 1 57378 8272 36169 36187 65896 65896 -0.005779951143040307 YPWRARRP 8 Unmodified _YPWRARRP_ 0 0 0 ENST00000592852.1_2_19:45910101-45910188:+|nuORF ENST00000592852.1_2_19:45910101-45910188:+|nuORF ENST00000592852.1_2_19:45910101-45910188:+|nuORF MSMS UPN47_class_I_Rep_1 2 551.27197265625 2 551.306867 1100.59918 NaN NaN NaN NaN NaN NaN NaN 78.062 1 81.491 80.991 81.991 3.4289 0 0 0 0.40604 1 19394 19394 2.5775 0.51773 1 57379 7637 36170 36188 65897 65897 0.052905131053194054 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 442.72930908203125 2 442.729261 883.443968 0.16658 7.3751E-05 0.78812 0.00034892 0.9547 0.00042268 442.72923272527225 104.25 0.23394 104.25 104.14 104.37 0 56 29 3 0 0 0 0.82752 1 25461 25461 9.3474 0 1 330480 + 57380 24879 36171 36189 65898 65898 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN46_class_I_Rep_3 1 442.7291259765625 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 104.13 1 104.13 103.63 104.63 0 0 0 0 0.40404 1 25425 25425 5.2307 0 1 + 57381 24879 36171 36189 65899 65899 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 442.7291259765625 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 100.06 1 103.56 103.06 104.06 3.4974 0 0 0 0.39624 1 24482 24482 9.3474 0 1 + 57382 24879 36171 36189 65900 65900 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN47_class_I_Rep_2 3 442.7292175292969 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 100.18 1 103.68 103.18 104.18 3.4974 0 0 0 0.40404 1 24511 24511 5.2307 0 1 + 57383 24879 36171 36189 65901 65901 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 442.72955322265625 2 442.729261 883.443968 -0.26059 -0.00011537 0.63505 0.00028116 0.37447 0.00016579 442.72941824413215 100.18 0.44891 103.63 103.41 103.86 3.4483 100 61 2 0 0 0 0.82752 1 24754 24754 9.3474 0 1 827030 + 57384 24879 36171 36189 65902 65902 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 442.7290954589844 2 442.729261 883.443968 -0.023001 -1.0183E-05 0.25233 0.00011171 0.22933 0.00010153 442.72926211498964 99.842 1.0781 103.45 102.83 103.91 3.6065 186 139 2 0 0 0 0.82752 2 24109 24109;24175 9.3474 0 1 569930 + 57385 24879 36171 36189 65903;65904 65903 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN48_class_I_Rep_2 6 442.7292785644531 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 99.722 1 103.48 102.98 103.98 3.7575 0 0 0 0.40404 1 23686 23686 5.2307 0 1 + 57386 24879 36171 36189 65905 65905 -0.002415755396100394 YPYGTKGV 8 Unmodified _YPYGTKGV_ 0 0 0 REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense REV__L1MA2_dup4936|chrX:154701597-154702857:+|2.356862215058604|0.1156245041189908|4.35|151.0|35|3|sense MSMS UPN48_class_I_Rep_2 6 442.72930908203125 2 442.729261 883.443968 NaN NaN NaN NaN NaN NaN NaN 99.879 1 103.64 103.14 104.14 3.7575 0 0 0 0.39624 1 23726 23726 9.3474 0 1 + 57387 24879 36171 36189 65906 65906 -0.002415755396100394 YPYKRKQE 8 Unmodified _YPYKRKQE_ 0 0 0 MLT1D_dup14515|chr12:76480805-76481262:+|1.5213308184720684|0.0128162313888132|6.89|151.0|3|1|sense MLT1D_dup14515|chr12:76480805-76481262:+|1.5213308184720684|0.0128162313888132|6.89|151.0|3|1|sense MLT1D_dup14515|chr12:76480805-76481262:+|1.5213308184720684|0.0128162313888132|6.89|151.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 556.2969360351562 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 101.9 1 105.63 105.13 106.13 3.7252 0 0 0 0.40581 1 24156 24156 2.8892 0.58649 1 57388 16334 36172 36190 65907 65907 0.03132547708855782 YPYPSLYR 8 Unmodified _YPYPSLYR_ 0 0 0 L1MDa_dup2995|chr7:152286595-152287742:+|2.175772808936404|0.0337304722693228|6.01|151.0|35|3|sense L1MDa_dup2995|chr7:152286595-152287742:+|2.175772808936404|0.0337304722693228|6.01|151.0|35|3|sense L1MDa_dup2995|chr7:152286595-152287742:+|2.175772808936404|0.0337304722693228|6.01|151.0|35|3|sense MSMS UPN48_class_I_Rep_3 7 530.244140625 2 529.768917 1057.52328 NaN NaN NaN NaN NaN NaN NaN 118.58 1 122.17 121.67 122.67 3.5847 0 0 0 0.40738 1 28198 28198 0.79363 0 1 57389 12117 36173 36191 65908 65908 -0.0031792858546850766 YPYRYPAL 8 Unmodified _YPYRYPAL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_1 2 521.7713012695312 2 521.77146 1041.52837 0.15479 8.0763E-05 -0.10654 -5.559E-05 0.048245 2.5173E-05 521.7712481866657 50.033 1.1653 53.661 53.252 54.417 3.6285 109 59 3 0 0 0 0.82752 1 10919 10919 36.044 22.536 1 188780 57390 1297 36174 36192 65909 65909 0.00926375277117586 YPYRYPAL 8 Unmodified _YPYRYPAL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_2 3 521.7713623046875 2 521.77146 1041.52837 0.048546 2.533E-05 0.050707 2.6457E-05 0.099252 5.1787E-05 521.7713617704283 50.38 1.1664 53.723 53.331 54.498 3.3431 105 60 3 0 0 0 0.82752 1 11053 11053 44.407 30.899 1 220200 57391 1297 36174 36192 65910 65910 0.00926375277117586 YPYRYPAL 8 Unmodified _YPYRYPAL_ 0 0 0 ENSG00000087274|ENST00000683351|ADD1;nc|ENSG00000087274|P35611-3|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ADD1|p.Y407Ifs*9|1|0.29|ENSG00000087274|chr4:2904814-2904815|-/A|frameshift_variant ENSG00000087274|ENST00000683351|ADD1 ENSG00000087274|ENST00000683351|ADD1 MULTI-MSMS UPN47_class_I_Rep_3 4 521.7713012695312 2 521.77146 1041.52837 0.39386 0.00020551 -0.39745 -0.00020738 -0.0035867 -1.8715E-06 521.7710989228067 50.476 1.1785 53.702 53.404 54.583 3.2262 92 60 2 0 0 0 0.82752 1 11146 11146 53.576 34.137 1 191240 57392 1297 36174 36192 65911 65911 0.00926375277117586 YPYSDLNRV 9 Unmodified _YPYSDLNRV_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|8|1|sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.2816162109375 2 563.780013 1125.54547 0.33441 0.00018853 -0.44986 -0.00025362 -0.11545 -6.5091E-05 563.7795166216101 54.54 0.98517 58.041 57.673 58.658 3.5014 89 57 2 0 0 0 0.41259 1 12419 12419 7.2892 1.0834 1 159980 + 57393 27342 36175 36193 65912 65912 -0.012277489077177961 YPYSDLNRV 9 Unmodified _YPYSDLNRV_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|8|1|sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 563.7792358398438 2 563.780013 1125.54547 0.51757 0.00029179 -0.46899 -0.00026441 0.048578 2.7388E-05 563.7796009788046 54.867 0.88346 58.186 57.83 58.713 3.3187 84 48 2 0 0 0 0.36392 1 12501 12501 10.074 2.7847 1 160250 + 57394 27342 36175 36193 65913 65913 -0.012277489077177961 YPYSDLNRV 9 Unmodified _YPYSDLNRV_ 0 0 0 REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|8|1|sense REV__L1MD1_dup4194|chrX:150703994-150705789:+|1.8023009849752576|0.2045536214669283|3.14|151.0|8|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 563.7802124023438 2 563.780013 1125.54547 0.4337 0.00024451 -0.24577 -0.00013856 0.18793 0.00010595 563.7796327241941 55.001 0.95593 58.179 57.797 58.753 3.1779 111 55 3 0 0 0 0.36392 1 12568 12568 10.074 1.3285 1 129930 + 57395 27342 36175 36193 65914 65914 -0.012277489077177961 YPYYSQPEY 9 Unmodified _YPYYSQPEY_ 0 0 0 L1MA5A_dup1610|chr7:140895409-140896134:-|1.2979714305826222|0.0148019577930918|6.45|151.0|37|2|anti-sense L1MA5A_dup1610|chr7:140895409-140896134:-|1.2979714305826222|0.0148019577930918|6.45|151.0|37|2|anti-sense L1MA5A_dup1610|chr7:140895409-140896134:-|1.2979714305826222|0.0148019577930918|6.45|151.0|37|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 605.2598266601562 2 605.258579 1208.50261 0.5162 0.00031243 1.0511 0.00063618 1.5673 0.00094862 605.7605983932864 52.809 0.74911 56.136 55.902 56.652 3.3266 76 48 2 0 0 0 0.44858 1 11807 11807 5.2307 1.2863 1 311120 57396 9937 36176 36194 65915 65915 -0.09330563755793264 YQCTFPYA 8 Unmodified _YQCTFPYA_ 0 0 0 REV__L1MB3_dup5858|chr6:73009292-73012656:+|2.241362851075756|0.0064437570549095|8.44|150.0|132|1|anti-sense REV__L1MB3_dup5858|chr6:73009292-73012656:+|2.241362851075756|0.0064437570549095|8.44|150.0|132|1|anti-sense MSMS UPN47_class_I_Rep_1 2 496.7126159667969 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 31.418 1 35.147 34.647 35.647 3.7293 0 0 0 0.40738 1 5268 5268 0.79363 0 1 + 57397 25901 36177 36195 65916 65916 -0.08509525653983019 YQCTFPYA 8 Unmodified _YQCTFPYA_ 0 0 0 REV__L1MB3_dup5858|chr6:73009292-73012656:+|2.241362851075756|0.0064437570549095|8.44|150.0|132|1|anti-sense REV__L1MB3_dup5858|chr6:73009292-73012656:+|2.241362851075756|0.0064437570549095|8.44|150.0|132|1|anti-sense MSMS UPN48_class_I_Rep_2 6 496.7120056152344 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 113.47 1 117.13 116.63 117.63 3.663 0 0 0 0.40738 1 27083 27083 0.79363 0 1 + 57398 25901 36177 36195 65917 65917 -0.08509525653983019 YQDLLNVKM 9 Oxidation (M) _YQDLLNVKM(Oxidation (M))_ YQDLLNVKM(1) YQDLLNVKM(68) 0 0 1 ENSG00000026025|ENST00000544301|VIM;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;ENSG00000277586|ENST00000610854|NEFL;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_1 2 570.29150390625 2 570.291899 1138.56925 0.08292 4.7289E-05 -0.99843 -0.00056939 -0.91551 -0.00052211 570.2917591555404 45.024 0.75234 48.724 48.44 49.192 3.6999 94 46 3 0 0 0 0.013215 2 9470 9386;9470 67.838 31.332 1 249620 57399 824;4707;1697 36178 36196 65918;65919 65919 13 0.0055034853444340115 YQDLLNVKM 9 Oxidation (M) _YQDLLNVKM(Oxidation (M))_ YQDLLNVKM(1) YQDLLNVKM(59) 0 0 1 ENSG00000026025|ENST00000544301|VIM;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;ENSG00000277586|ENST00000610854|NEFL;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_2 3 570.2918090820312 2 570.291899 1138.56925 0.22358 0.00012751 -0.83422 -0.00047575 -0.61064 -0.00034824 570.2917776461443 45.38 0.77071 48.734 48.392 49.162 3.3535 95 45 3 0 0 0 0.026894 4 9536 9495;9536;9577;9622 59.052 31.829 1 249900 57400 824;4707;1697 36178 36196 65920;65921;65922;65923 65921 13 0.0055034853444340115 YQDLLNVKM 9 Oxidation (M) _YQDLLNVKM(Oxidation (M))_ YQDLLNVKM(1) YQDLLNVKM(79) 0 0 1 ENSG00000026025|ENST00000544301|VIM;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;ENSG00000277586|ENST00000610854|NEFL;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;nc|ENSG00000104722|P07197-2|NEFM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN47_class_I_Rep_3 4 570.2916870117188 2 570.291899 1138.56925 0.2441 0.00013921 -0.7831 -0.0004466 -0.539 -0.00030739 570.2917135583185 45.474 0.70684 48.718 48.358 49.065 3.2441 98 42 3 0 0 0 0.0052635 4 9621 9578;9621;9661;9699 79.427 45.982 1 268820 57401 824;4707;1697 36178 36196 65924;65925;65926;65927 65925 13 0.0055034853444340115 YQEGIMGRY 9 Unmodified _YQEGIMGRY_ 0 0 0 L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|34|2|sense L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|34|2|sense L1MB4_dup3116|chr6:134972305-134973532:+|1.178431107529302|0.234136316335031|2.33|151.0|34|2|sense MSMS UPN48_class_I_Rep_2 6 558.7632446289062 2 558.760766 1115.50698 NaN NaN NaN NaN NaN NaN NaN 14.583 1 18.237 17.737 18.737 3.6542 0 0 0 0.39598 1 467 467 1.6526 0.85899 1 57402 10497 36179 36197 65928 65928 -0.04615377813865962 YQENKLCK 8 Unmodified _YQENKLCK_ 0 0 0 REV__ENSG00000205883|ENST00000382208|DEFB135 REV__ENSG00000205883|ENST00000382208|DEFB135 MSMS UPN47_class_I_Rep_2 3 513.2581787109375 2 513.257859 1024.50117 NaN NaN NaN NaN NaN NaN NaN 26.267 1 29.762 29.262 30.262 3.4945 0 0 0 0.40746 1 3774 3774 0.69038 0 1 + 57403 21226 36180 36198 65929 65929 -0.010104763255640137 YQFPGFPAA 9 Unmodified _YQFPGFPAA_ 0 0 0 ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|4|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|6|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|1|intron;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|5|intron;ENSG00000153944|ENST00000284073|MSI2;ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|2|intron ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|4|intron ENSG00000153944.12,MSI2,chr17,+,I29.1,57652162,57655694|82|17.67|4|intron MSMS UPN47_class_I_Rep_1 2 499.24261474609375 2 499.242535 996.470518 NaN NaN NaN NaN NaN NaN NaN 73.229 1 76.615 76.115 77.115 3.3861 0 0 0 0.35339 1 17969 17969 7.9102 0 1 57404 3655 36181 36199 65930 65930 -0.0278588664829158 YQFRVHHF 8 Unmodified _YQFRVHHF_ 0 0 0 L1ME3G_dup4127|chr4:73241782-73242686:+|1.9212227671704527|0.1239284062696382|3.95|151.0|63|3|anti-sense L1ME3G_dup4127|chr4:73241782-73242686:+|1.9212227671704527|0.1239284062696382|3.95|151.0|63|3|anti-sense L1ME3G_dup4127|chr4:73241782-73242686:+|1.9212227671704527|0.1239284062696382|3.95|151.0|63|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 567.2535400390625 2 567.2856 1132.55665 0.51901 0.00029443 -1.1264 -0.00063897 -0.60735 -0.00034454 567.2850088929347 57.305 0.28328 60.596 60.486 60.769 3.2912 28 22 2 0 0 0 0.72333 1 13169 13169 12.532 0.29089 1 111190 57405 12837 36182 36200 65931 65931 -0.004328820229147823 YQFSKNFSL 9 Unmodified _YQFSKNFSL_ 0 0 0 ENST00000478866.5_1_1:161172175-161179984:+|nuORF;ENST00000483804.5_1_1:161179060-161183980:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2 ENST00000478866.5_1_1:161172175-161179984:+|nuORF ENST00000478866.5_1_1:161172175-161179984:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 567.253173828125 2 567.284931 1132.55531 0.36076 0.00020466 0.031489 1.7863E-05 0.39225 0.00022252 567.2846948431169 56.966 0.15274 60.424 60.275 60.427 3.4572 17 11 2 0 0 0 0.11642 1 13024 13024 12.241 2.8932 1 135200 57406 3815 36183 36201 65932 65932 -0.005665609023253637 YQFSKNFSL 9 Unmodified _YQFSKNFSL_ 0 0 0 ENST00000478866.5_1_1:161172175-161179984:+|nuORF;ENST00000483804.5_1_1:161179060-161183980:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2 ENST00000478866.5_1_1:161172175-161179984:+|nuORF ENST00000478866.5_1_1:161172175-161179984:+|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 567.284931 1132.55531 0.51885 0.00029433 -0.05204 -2.9521E-05 0.46681 0.00026481 567.2849591164959 57.069 0.084568 60.369 60.302 60.386 3.3009 -0.027017 -4.1582E-05 NaN 15.248 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 81984 57407 3815 36183 36201 -0.005665609023253637 YQFWQRLH 8 Unmodified _YQFWQRLH_ 0 0 0 REV__MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|5|1|sense REV__MER21-int_dup118|chr2:201005037-201005824:+|1.3655621841395296|0.0169029863478028|6.34|151.0|5|1|sense MSMS UPN48_class_I_Rep_2 6 589.35009765625 2 589.298707 1176.58286 NaN NaN NaN NaN NaN NaN NaN 73.333 1 76.911 76.411 77.411 3.5779 0 0 0 0.40746 1 17215 17215 0.69038 0.16561 1 + 57408 31169 36184 36202 65933 65933 0.0016338714856374281 YQFYLIRP 8 Unmodified _YQFYLIRP_ 0 0 0 REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|36|1|anti-sense REV__L1MCa_dup2451|chr5:116325536-116326507:+|1.2038348573816844|0.0327110064862015|5.2|150.0|36|1|anti-sense MSMS UPN48_class_I_Rep_3 7 550.2986450195312 2 550.300384 1098.58622 NaN NaN NaN NaN NaN NaN NaN 34.341 1 38.021 37.521 38.521 3.6797 0 0 0 0.40625 1 5445 5445 2.3027 0 1 + 57409 27195 36185 36203 65934 65934 0.040866372025675446 YQHASSWI 8 Unmodified _YQHASSWI_ 0 0 0 REV__ENSG00000128039|ENST00000264228|SRD5A3 REV__ENSG00000128039|ENST00000264228|SRD5A3 MSMS UPN47_class_I_Rep_3 4 496.2342529296875 2 496.235242 990.45593 NaN NaN NaN NaN NaN NaN NaN 31.046 1 34.357 33.857 34.857 3.3116 0 0 0 0.40746 1 5238 5238 0.69038 0 1 + 57410 18891 36186 36204 65935 65935 -0.03967958796442872 YQHHDTWF 8 Unmodified _YQHHDTWF_ 0 0 0 LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense LTR16D2_dup204|chr12:11019049-11019472:+|1.1760872343104596|0.0482807023588303|4.61|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 567.69873046875 2 567.243598 1132.47264 NaN NaN NaN NaN NaN NaN NaN 115.09 1 118.71 118.21 119.21 3.6282 0 0 0 0.40604 1 27992 27992 2.5775 0 1 57411 15576 36187 36205 65936 65936 -0.08829457910496785 YQHHLLKRLF 10 Unmodified _YQHHLLKRLF_ 0 0 0 L1MB4_dup3488|chr7:92219302-92220323:-|1.3493919205456082|0.0743542772868301|4.18|151.0|41|1|anti-sense L1MB4_dup3488|chr7:92219302-92220323:-|1.3493919205456082|0.0743542772868301|4.18|151.0|41|1|anti-sense L1MB4_dup3488|chr7:92219302-92220323:-|1.3493919205456082|0.0743542772868301|4.18|151.0|41|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 452.262939453125 3 452.262935 1353.76697 0.24469 0.00011067 -0.26899 -0.00012165 -0.024297 -1.0988E-05 452.26276784496355 58.671 1.966 62.169 61.46 63.426 3.4987 168 128 2 0 0 0 0.56433 1 13020 13020 0.77653 0.078866 1 500210 57412 10508 36188 36206 65937 65937 0.1042415557926688 YQHYLLKTV 9 Unmodified _YQHYLLKTV_ 0 0 0 L1MB8_dup10234|chr10:70415188-70416298:+|2.7696211769937573|0.4597470669837193|2.59|151.0|55|1|anti-sense L1MB8_dup10234|chr10:70415188-70416298:+|2.7696211769937573|0.4597470669837193|2.59|151.0|55|1|anti-sense L1MB8_dup10234|chr10:70415188-70416298:+|2.7696211769937573|0.4597470669837193|2.59|151.0|55|1|anti-sense MSMS UPN48_class_I_Rep_1 5 582.8238525390625 2 582.824224 1163.63389 NaN NaN NaN NaN NaN NaN NaN 36.784 1 40.291 39.791 40.791 3.507 0 0 0 0.4007 1 6179 6179 0.52476 0 1 57413 10892 36189 36207 65938 65938 0.058622914027409934 YQIIKLQW 8 Unmodified _YQIIKLQW_ 0 0 0 REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|111|1|anti-sense REV__HERVIP10F-int_dup150|chr10:18573539-18576517:+|1.1413704263503626|0.0392441680137238|4.86|151.0|111|1|anti-sense MSMS UPN46_class_I_Rep_3 1 546.3135375976562 2 546.316035 1090.61752 NaN NaN NaN NaN NaN NaN NaN 35.082 1 35.082 34.582 35.582 0 0 0 0 0.40625 1 6344 6344 2.3027 0.24298 1 + 57414 23745 36190 36208 65939 65939 0.07583210236657578 YQIIMLAYF 9 Unmodified _YQIIMLAYF_ 0 0 0 REV__L1MC3_dup12550|chr20:32500605-32501491:+|1.555014555251443|0.0093581777490939|7.38|151.0|44|1|anti-sense REV__L1MC3_dup12550|chr20:32500605-32501491:+|1.555014555251443|0.0093581777490939|7.38|151.0|44|1|anti-sense MSMS UPN48_class_I_Rep_1 5 581.3058471679688 2 581.304278 1160.594 NaN NaN NaN NaN NaN NaN NaN 66.021 1 69.473 68.973 69.973 3.4516 0 0 0 0.3264 1 15065 15065 9.3474 4.1168 1 + 57415 26723 36191 36209 65940 65940 0.020130284078049954 YQIKVSIIKH 10 Unmodified _YQIKVSIIKH_ 0 0 0 REV__L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|13|2|sense REV__L1MD_dup6192|chr11:73116032-73116457:-|1.812075260218271|0.0159610830551055|6.83|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 614.8748168945312 2 614.874248 1227.73394 0.63473 0.00039028 0.093107 5.7249E-05 0.72783 0.00044753 614.8743405801014 108.67 0.62382 112.2 112.07 112.7 3.5333 217 72 4 0 0 0 0.52562 1 26432 26432 8.7454 0.58988 1 55865000 + 57416 27276 36192 36210 65941 65941 0.12918528736531698 YQILEPHG 8 Unmodified _YQILEPHG_ 0 0 0 nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 MSMS UPN46_class_I_Rep_3 1 478.74481201171875 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 33.167 1 33.167 32.667 33.667 0 0 0 0 0.39819 1 5768 5768 8.5933 0.68312 1 57417 3966 36193 36211 65942 65942 -0.003187881366216061 YQKFWRSR 8 Unmodified _YQKFWRSR_ 0 0 0 MER21A_dup495|chr4:87019221-87020057:+|1.3549685402993716|0.0316003135608124|5.42|151.0|7|1|sense MER21A_dup495|chr4:87019221-87020057:+|1.3549685402993716|0.0316003135608124|5.42|151.0|7|1|sense MER21A_dup495|chr4:87019221-87020057:+|1.3549685402993716|0.0316003135608124|5.42|151.0|7|1|sense MSMS UPN46_class_I_Rep_3 1 585.813232421875 2 585.811982 1169.60941 NaN NaN NaN NaN NaN NaN NaN 81.425 1 81.425 80.925 81.925 0 0 0 0 0.40746 1 19229 19229 0.69038 0 1 57418 15857 36194 36212 65943 65943 0.03139076039883548 YQKIKMYKYVK 11 Unmodified _YQKIKMYKYVK_ 0 0 0 REV__L1M1_dup7668|chr12:111496565-111497734:+|1.0563984735042058|0.0245515128749245|5.43|149.0|15|2|sense REV__L1M1_dup7668|chr12:111496565-111497734:+|1.0563984735042058|0.0245515128749245|5.43|149.0|15|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.9512634277344 3 497.951257 1490.83194 0.3548 0.00017667 -0.47346 -0.00023576 -0.11866 -5.9087E-05 497.95101281816784 21.087 0.61903 24.735 24.285 24.904 3.648 88 69 2 0 0 0 0.67113 1 1956 1956 1.3296 0.87513 1 95095 + 57419 24136 36195 36213 65944 65944 0.10615969270224923 YQKMKMWA 8 Unmodified _YQKMKMWA_ 0 0 0 ENST00000380033.8_1_X:18219997-18221692:-|nuORF ENST00000380033.8_1_X:18219997-18221692:-|nuORF ENST00000380033.8_1_X:18219997-18221692:-|nuORF MSMS UPN48_class_I_Rep_1 5 542.7882080078125 2 543.267173 1084.51979 NaN NaN NaN NaN NaN NaN NaN 24.899 1 28.465 27.965 28.965 3.5667 0 0 0 0.40746 1 2818 2818 0.69038 0 1 57420 6485 36196 36214 65945 65945 -0.019086379553300503 YQKPERLF 8 Unmodified _YQKPERLF_ 0 0 0 L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.7957763671875 2 540.795466 1079.57638 0.43237 0.00023382 -0.65342 -0.00035337 -0.22105 -0.00011954 540.795320664766 68.514 0.32335 71.966 71.902 72.225 3.4517 33 27 2 0 0 0 0.82752 1 15830 15830 15.847 0 1 122900 57421 13484 36197 36215 65946 65946 0.039774491971684256 YQKPERLF 8 Unmodified _YQKPERLF_ 0 0 0 L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 540.7959594726562 2 540.795466 1079.57638 0.59773 0.00032325 -0.69425 -0.00037545 -0.096522 -5.2198E-05 540.795133494722 68.319 0.17274 71.828 71.732 71.904 3.5094 26 16 3 0 0 0 0.82752 1 15653 15653 15.847 0 1 163100 57422 13484 36197 36215 65947 65947 0.039774491971684256 YQKPERLF 8 Unmodified _YQKPERLF_ 0 0 0 L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 540.795466 1079.57638 0.43237 0.00023382 -0.65342 -0.00035337 -0.22105 -0.00011954 540.795320664766 68.514 0.32335 71.966 71.902 72.225 3.4517 0.0653 7.0997E-05 NaN 15.847 33 27 2 NaN NaN NaN NaN 0 NaN NaN 0 122900 57423 13484 36197 36215 0.039774491971684256 YQKPERLF 8 Unmodified _YQKPERLF_ 0 0 0 L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 540.795466 1079.57638 0.48309 0.00026125 -0.76267 -0.00041245 -0.27958 -0.00015119 540.7951091252442 68.399 0.26559 71.908 71.802 72.068 3.5083 0.0069917 -4.7166E-05 NaN 15.847 36 27 2 NaN NaN NaN NaN 0 NaN NaN 0 125740 57424 13484 36197 36215 0.039774491971684256 YQKPERLF 8 Unmodified _YQKPERLF_ 0 0 0 L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense L1P2_dup1395|chr15:57269392-57271723:-|2.994136410158141|0.1843860257526843|4.02|151.0|39|2|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_3 7 2 540.795466 1079.57638 0.59773 0.00032325 -0.69425 -0.00037545 -0.096522 -5.2198E-05 540.795133494722 68.319 0.17274 71.828 71.732 71.904 3.5094 -0.072292 2.6838E-05 NaN 15.847 26 16 3 NaN NaN NaN NaN 0 NaN NaN 0 163100 57425 13484 36197 36215 0.039774491971684256 YQKPNKFK 8 Unmodified _YQKPNKFK_ 0 0 0 REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense REV__L1MEg_dup6393|chr7:37736262-37737024:+|1.4019371741753857|0.0157660107161525|6.47|150.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 526.7982177734375 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 25.966 1 29.728 29.228 30.228 3.7624 0 0 0 0.40746 1 3645 3645 0.69038 0 1 + 57426 28773 36198 36216 65948 65948 0.05773753059793307 YQKQEKRKKQQ 11 Unmodified _YQKQEKRKKQQ_ 0 0 0 REV__L1MC1_dup8684|chr10:63511891-63513134:-|2.378853172626077|0.0238287594723788|6.64|151.0|4|1|sense REV__L1MC1_dup8684|chr10:63511891-63513134:-|2.378853172626077|0.0238287594723788|6.64|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 497.95208740234375 3 497.951196 1490.83176 NaN NaN NaN NaN NaN NaN NaN 19.344 1 22.956 22.456 23.456 3.6118 0 0 0 0.38417 1 1762 1762 0.094841 0 1 + 57427 26610 36199 36217 65949 65949 0.1059768559459826 YQKQEKRKKQQ 11 Unmodified _YQKQEKRKKQQ_ 0 0 0 REV__L1MC1_dup8684|chr10:63511891-63513134:-|2.378853172626077|0.0238287594723788|6.64|151.0|4|1|sense REV__L1MC1_dup8684|chr10:63511891-63513134:-|2.378853172626077|0.0238287594723788|6.64|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 497.9511413574219 3 497.951196 1490.83176 NaN NaN NaN NaN NaN NaN NaN 19.643 1 23.255 22.755 23.755 3.6118 0 0 0 0.38417 1 1844 1844 0.094841 0 1 + 57428 26610 36199 36217 65950 65950 0.1059768559459826 YQKQKEQL 8 Unmodified _YQKQKEQL_ 0 0 0 nc|ENSG00000162520|Q9H7C4-2|SYNC;ENSG00000162520|ENST00000409190|SYNC nc|ENSG00000162520|Q9H7C4-2|SYNC nc|ENSG00000162520|Q9H7C4-2|SYNC MULTI-MSMS UPN48_class_I_Rep_3 7 533.787353515625 2 532.790381 1063.56621 0.40881 0.00021781 -3.7102 -0.0019768 -3.3014 -0.001759 532.7903293267892 50.781 0.94012 54.391 53.998 54.938 3.6105 210 63 5 0 0 0 0.82752 1 10407 10407 12.532 1.0368 1 847130 57429 3937 36200 36218 65951 65951 0.036968414719467546 YQKQWVRY 8 Unmodified _YQKQWVRY_ 0 0 0 REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|22|2|sense REV__L1M2_dup6866|chr11:112243709-112245631:+|2.203457577492298|0.0682765636466774|5.01|151.0|22|2|sense MSMS UPN48_class_I_Rep_1 5 585.8052368164062 2 585.806365 1169.59818 NaN NaN NaN NaN NaN NaN NaN 68.839 1 72.294 71.794 72.794 3.4548 0 0 0 0.40625 1 15924 15924 2.3027 0.24298 1 + 57430 24225 36201 36219 65952 65952 0.020162539457487583 YQKSKRISIF 10 Unmodified _YQKSKRISIF_ 0 0 0 nc|ENSG00000136371|P49914-2|MTHFS;ENSG00000136371|ENST00000258874|MTHFS nc|ENSG00000136371|P49914-2|MTHFS nc|ENSG00000136371|P49914-2|MTHFS MSMS UPN47_class_I_Rep_2 3 635.3697509765625 2 635.36933 1268.72411 NaN NaN NaN NaN NaN NaN NaN 97.8 1 101.28 100.78 101.78 3.4836 0 0 0 0.53105 1 23992 23992 1.4819 0 1 57431 2966 36202 36220 65953 65953 0.10049340731166012 YQKWDMNYL 9 Unmodified _YQKWDMNYL_ 0 0 0 L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|217|3|anti-sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|217|3|anti-sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|217|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 630.7891845703125 2 630.789524 1259.56449 -0.060072 -3.7893E-05 -0.69513 -0.00043848 -0.7552 -0.00047637 630.7890133811709 14.785 0.33788 18.26 18.151 18.489 3.475 68 36 3 0 0 0 0.49026 1 638 638 1.6526 0 1 58908 57432 10177 36203 36221 65954 65954 -0.05490535608328173 YQKWDMNYL 9 Unmodified _YQKWDMNYL_ 0 0 0 L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|217|3|anti-sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|217|3|anti-sense L1MB1_dup3538|chrX:97488292-97491403:-|2.169334347806513|0.0129691194542842|7.39|151.0|217|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 630.7871704101562 2 630.789524 1259.56449 0.048039 3.0302E-05 -0.96104 -0.00060621 -0.913 -0.00057591 630.7889513886282 14.953 0.32692 18.339 18.187 18.514 3.3864 51 35 2 0 0 0 0.49026 1 691 691 1.6526 0.32309 1 38628 57433 10177 36203 36221 65955 65955 -0.05490535608328173 YQKWGQAL 8 Unmodified _YQKWGQAL_ 0 0 0 REV__ENSG00000136514|ENST00000259030|RTP4 REV__ENSG00000136514|ENST00000259030|RTP4 MSMS UPN47_class_I_Rep_2 3 497.2628173828125 2 497.261259 992.507966 NaN NaN NaN NaN NaN NaN NaN 43.977 1 47.335 46.835 47.835 3.358 0 0 0 0.40625 1 9125 9125 2.3027 0 1 + 57434 19186 36204 36222 65956 65956 0.01141204617317726 YQKYKNYL 8 Unmodified _YQKYKNYL_ 0 0 0 AluJb_dup1734|chr1:21158170-21158475:-|1.2076706678510487|0.0119280124396376|6.66|151.0|10|3|sense AluJb_dup1734|chr1:21158170-21158475:-|1.2076706678510487|0.0119280124396376|6.66|151.0|10|3|sense AluJb_dup1734|chr1:21158170-21158475:-|1.2076706678510487|0.0119280124396376|6.66|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 560.2951049804688 2 560.295299 1118.57605 0.43738 0.00024506 0.075112 4.2085E-05 0.51249 0.00028714 560.2949708556147 66.961 1.0669 70.152 69.825 70.892 3.1914 182 78 3 0 0 0 0.82752 1 16299 16299 8.5933 0.68312 1 302470 57435 36 36205 36223 65957 65957 0.021500294773204587 YQLDYLQYA 9 Unmodified _YQLDYLQYA_ 0 0 0 REV__L1M4_dup14070|chr11:77758344-77759136:-|1.5323603165517925|0.0295970157794612|5.69|150.0|35|1|anti-sense REV__L1M4_dup14070|chr11:77758344-77759136:-|1.5323603165517925|0.0295970157794612|5.69|150.0|35|1|anti-sense MSMS UPN48_class_I_Rep_2 6 588.7813720703125 2 588.782222 1175.54989 NaN NaN NaN NaN NaN NaN NaN 71.622 1 75.173 74.673 75.673 3.5505 0 0 0 0.34878 1 16723 16723 8.1555 1.0538 1 + 57436 24368 36206 36224 65958 65958 -0.030862844848115856 YQLDYLQYA 9 Unmodified _YQLDYLQYA_ 0 0 0 REV__L1M4_dup14070|chr11:77758344-77759136:-|1.5323603165517925|0.0295970157794612|5.69|150.0|35|1|anti-sense REV__L1M4_dup14070|chr11:77758344-77759136:-|1.5323603165517925|0.0295970157794612|5.69|150.0|35|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.7826538085938 2 588.782222 1175.54989 0.56451 0.00033238 -0.016639 -9.7967E-06 0.54787 0.00032258 588.7820684271471 71.295 0.67844 74.814 74.526 75.204 3.5185 137 61 3 0 0 0 0.38714 1 16660 16660 8.7454 1.1365 1 220520 + 57437 24368 36206 36224 65959 65959 -0.030862844848115856 YQLEAEKKK 9 Unmodified _YQLEAEKKK_ 0 0 0 REV__L1ME4b_dup12996|chr10:46792916-46793111:-|1.0259565876729493|0.0326301359820178|4.97|149.0|8|3|sense REV__L1ME4b_dup12996|chr10:46792916-46793111:-|1.0259565876729493|0.0326301359820178|4.97|149.0|8|3|sense MSMS UPN47_class_I_Rep_2 3 568.8195190429688 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 58.531 1 61.813 61.313 62.313 3.2818 0 0 0 0.3377 1 13556 13556 8.7454 0 1 + 57438 28252 36207 36225 65960 65960 0.061336836774898984 YQLELRTTL 9 Unmodified _YQLELRTTL_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MULTI-MSMS UPN47_class_I_Rep_1 2 569.3213500976562 2 568.819138 1135.62372 0.37725 0.00021459 0.28152 0.00016013 0.65877 0.00037472 568.8190240949749 58.06 0.62154 61.497 61.19 61.812 3.437 60 38 3 0 0 0 0.077454 2 13420 13368;13420 39.213 20.84 1 195160 57439 16763 36208 36226 65961;65962 65962 0.06133683677512636 YQLELRTTL 9 Unmodified _YQLELRTTL_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MSMS UPN47_class_I_Rep_2 3 568.8196411132812 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 58.328 1 61.61 61.11 62.11 3.2818 0 0 0 0.11743 1 13494 13494 21.59 3.2171 1 57440 16763 36208 36226 65963 65963 0.06133683677512636 YQLELRTTL 9 Unmodified _YQLELRTTL_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MSMS UPN47_class_I_Rep_3 4 568.8197021484375 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 58.23 1 61.395 60.895 61.895 3.1658 0 0 0 0.28608 1 13515 13515 11.495 2.1473 1 57441 16763 36208 36226 65964 65964 0.06133683677512636 YQLELRTTL 9 Unmodified _YQLELRTTL_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MSMS UPN47_class_I_Rep_3 4 568.8194580078125 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 58.353 1 61.519 61.019 62.019 3.1658 0 0 0 0.026395 1 13553 13553 49.742 22.519 1 57442 16763 36208 36226 65965 65965 0.06133683677512636 YQLELRTTL 9 Unmodified _YQLELRTTL_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MSMS UPN47_class_I_Rep_3 4 568.8186645507812 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 58.494 1 61.659 61.159 62.159 3.1658 0 0 0 0.10979 1 13595 13595 22.658 7.4096 1 57443 16763 36208 36226 65966 65966 0.06133683677512636 YQLELRTTL 9 Unmodified _YQLELRTTL_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MSMS UPN47_class_I_Rep_3 4 568.8201904296875 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 58.529 1 61.694 61.194 62.194 3.1658 0 0 0 0.098423 1 13606 13606 24.991 5.734 1 57444 16763 36208 36226 65967 65967 0.06133683677512636 YQLHFPFY 8 Unmodified _YQLHFPFY_ 0 0 0 REV__Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|38|3|sense REV__Charlie1_dup1037|chr9:85737136-85738261:+|1.119482072862859|0.0174237541939452|6.01|150.0|38|3|sense MSMS UPN48_class_I_Rep_3 7 557.7717895507812 2 557.77146 1113.52837 NaN NaN NaN NaN NaN NaN NaN 20.674 1 24.34 23.84 24.84 3.6667 0 0 0 0.40738 1 1806 1806 0.79363 0 1 + 57445 17266 36209 36227 65968 65968 -0.023856247228422944 YQLKTITY 8 Unmodified _YQLKTITY_ 0 0 0 REV__ENST00000394853.8_1_4:101984502-102001706:-|nuORF REV__ENST00000394853.8_1_4:101984502-102001706:-|nuORF MSMS UPN48_class_I_Rep_2 6 515.25146484375 2 515.2844 1028.55425 NaN NaN NaN NaN NaN NaN NaN 65.035 1 68.514 68.014 69.014 3.4792 0 0 0 0.40404 1 14752 14752 5.2307 0 1 + 57446 22108 36210 36228 65969 65969 0.04111224728740126 YQLRQKSY 8 Unmodified _YQLRQKSY_ 0 0 0 L1MCa_dup5129|chr11:5700873-5701316:-|1.3615968097704223|0.2047781941008189|2.73|151.0|9|2|sense L1MCa_dup5129|chr11:5700873-5701316:-|1.3615968097704223|0.2047781941008189|2.73|151.0|9|2|sense L1MCa_dup5129|chr11:5700873-5701316:-|1.3615968097704223|0.2047781941008189|2.73|151.0|9|2|sense MSMS UPN46_class_I_Rep_3 1 543.289794921875 2 543.290548 1084.56654 NaN NaN NaN NaN NaN NaN NaN 53.431 1 53.431 52.931 53.931 0 0 0 0 0.40625 1 11496 11496 2.3027 0 1 57447 11821 36211 36229 65970 65970 0.027642611918054172 YQNIKILH 8 Unmodified _YQNIKILH_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MSMS UPN47_class_I_Rep_3 4 514.7960205078125 2 514.798009 1027.58147 NaN NaN NaN NaN NaN NaN NaN 16.327 1 19.689 19.189 20.189 3.3619 0 0 0 0.40738 1 999 999 0.79363 0 1 57448 1604 36212 36230 65971 65971 0.06877753059779934 YQNIKRTSK 9 Unmodified _YQNIKRTSK_ 0 0 0 REV__L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|32|1|sense REV__L1PB1_dup4926|chr6:45312538-45315914:+|1.8535030625692492|0.0258158757911524|6.17|151.0|32|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 568.8194580078125 2 569.32238 1136.63021 0.33874 0.00019285 -2.4875 -0.0014162 -2.1488 -0.0012233 569.3210378806385 58.474 0.45953 61.639 61.375 61.835 3.1658 37 30 2 0 0 0 0.118 1 13553 13553 10.074 4.8433 1 156120 + 57449 30423 36213 36231 65972 65972 0.06735621628877198 YQNLVQLLY 9 Unmodified _YQNLVQLLY_ 0 0 0 REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 577.316650390625 2 577.316232 1152.61791 0.53861 0.00031095 -0.014372 -8.2973E-06 0.52424 0.00030265 577.3159979416955 58.959 0.64681 62.446 62.147 62.794 3.487 93 40 3 0 0 0 0.33654 1 12886 12886 11.64 0 1 238970 + 57450 26725 36214 36232 65973 65973 0.04770585165852026 YQNLVQLLY 9 Unmodified _YQNLVQLLY_ 0 0 0 REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 577.316232 1152.61791 0.53861 0.00031095 -0.014372 -8.2973E-06 0.52424 0.00030265 577.3159979416955 58.959 0.64681 62.446 62.147 62.794 3.487 0.073476 -6.6671E-05 NaN 11.64 93 40 3 NaN NaN NaN NaN 0 NaN NaN 0 238970 + 57451 26725 36214 36232 0.04770585165852026 YQNLVQLLY 9 Unmodified _YQNLVQLLY_ 0 0 0 REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 577.316232 1152.61791 0.56492 0.00032614 -0.072726 -4.1986E-05 0.4922 0.00028415 577.3161271127115 58.906 0.74086 62.405 62.077 62.817 3.4987 0.032478 -0.00013405 NaN 11.64 100 45 3 NaN NaN NaN NaN 0 NaN NaN 0 298090 + 57452 26725 36214 36232 0.04770585165852026 YQNLVQLLY 9 Unmodified _YQNLVQLLY_ 0 0 0 REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense REV__L1MC3_dup1601|chr2:157408036-157410056:-|9.715841109923296|0.3828408435786199|4.67|151.0|136|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 577.316232 1152.61791 0.43501 0.00025114 0.1665 9.6121E-05 0.60151 0.00034726 577.3162134065466 58.744 0.71577 62.267 61.974 62.69 3.5231 -0.10595 0.00014216 NaN 11.64 109 46 3 NaN NaN NaN NaN 0 NaN NaN 0 369240 + 57453 26725 36214 36232 0.04770585165852026 YQNPRYFFF 9 Unmodified _YQNPRYFFF_ 0 0 0 L1MB7_dup4341|chr3:71539421-71539761:-|1.0327561988424525|0.0235725631166773|5.45|151.0|4|1|sense L1MB7_dup4341|chr3:71539421-71539761:-|1.0327561988424525|0.0235725631166773|5.45|151.0|4|1|sense L1MB7_dup4341|chr3:71539421-71539761:-|1.0327561988424525|0.0235725631166773|5.45|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 640.9734497070312 2 641.306198 1280.59784 NaN NaN NaN NaN NaN NaN NaN 42.779 1 46.018 45.518 46.518 3.2394 0 0 0 0.40038 1 8811 8811 0.6015 0 1 57454 10833 36215 36233 65974 65974 -0.03123165774127301 YQNQHANI 8 Unmodified _YQNQHANI_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|3|1|sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.2344055175781 2 494.235773 986.456993 -0.6329 -0.0003128 -0.95752 -0.00047324 -1.5904 -0.00078604 494.23524197945244 15.677 0.51775 19.042 18.76 19.278 3.3659 76 57 2 0 0 0 0.82752 1 859 859 0.69038 0 1 43933 + 57455 28779 36216 36234 65975 65975 -0.03677744427545804 YQNQHANI 8 Unmodified _YQNQHANI_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|3|1|sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|3|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 494.235773 986.456993 -0.34453 -0.00017028 -0.98547 -0.00048705 -1.33 -0.00065734 494.2352885543263 15.316 0.31188 18.813 18.717 19.029 3.4968 -0.1424 0.00021222 NaN 0.69038 45 36 2 NaN NaN NaN NaN 0 NaN NaN 0 30850 + 57456 28779 36216 36234 -0.03677744427545804 YQNQHANI 8 Unmodified _YQNQHANI_ 0 0 0 REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|3|1|sense REV__L1MEg_dup7717|chr9:263296-264076:-|1.617966655427601|0.014819998695484|6.77|151.0|3|1|sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 494.235773 986.456993 -0.12572 -6.2137E-05 -1.8167 -0.00089787 -1.9424 -0.00096001 494.2349898919364 15.623 0.37389 19.01 18.884 19.258 3.3864 0.054831 -0.00060941 NaN 0.69038 48 40 2 NaN NaN NaN NaN 0 NaN NaN 0 22825 + 57457 28779 36216 36234 -0.03677744427545804 YQQESCETQ 9 Unmodified _YQQESCETQ_ 0 0 0 REV__L1ME3A_dup10509|chr11:68498493-68499136:-|2.2180417851175296|0.0231558075534266|6.58|151.0|12|2|sense REV__L1ME3A_dup10509|chr11:68498493-68499136:-|2.2180417851175296|0.0231558075534266|6.58|151.0|12|2|sense MSMS UPN47_class_I_Rep_1 2 558.2438354492188 2 558.219128 1114.4237 NaN NaN NaN NaN NaN NaN NaN 117.81 1 121.41 120.91 121.91 3.6036 0 0 0 0.39518 1 29215 29215 1.8442 0 1 + 57458 27979 36217 36235 65976 65976 -0.12893159052396186 YQQFPEFK 8 Unmodified _YQQFPEFK_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MSMS UPN47_class_I_Rep_3 4 544.2689208984375 2 543.766374 1085.5182 0.47061 0.0002559 -1.1654 -0.0006337 -0.69477 -0.00037779 544.2685773910644 86.348 0.049049 89.728 89.694 89.743 3.3801 7 5 2 0 0 0 0.82752 1 21644 21644 4.756 0 1 117630 57459 795 36218 36236 65977 65977 -0.021142324480933894 YQQIPLIL 8 Unmodified _YQQIPLIL_ 0 0 0 REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense MSMS UPN46_class_I_Rep_3 1 494.71966552734375 2 494.29731 986.580068 NaN NaN NaN NaN NaN NaN NaN 83.382 1 83.382 82.882 83.882 0 0 0 0 0.40404 1 19803 19803 5.2307 0 1 + 57460 28309 36219 36237 65978 65978 0.08624118971056305 YQQIPLIL 8 Unmodified _YQQIPLIL_ 0 0 0 REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 494.2969970703125 2 494.29731 986.580068 0.312 0.00015422 -0.1394 -6.8905E-05 0.1726 8.5314E-05 494.29713824187854 78.342 0.57613 81.685 81.447 82.023 3.3428 108 63 2 0 0 0 0.82752 4 19414 19414;19452;19484;19524 13.508 0 1 213560 + 57461 28309 36219 36237 65979;65980;65981;65982 65979 0.08624118971056305 YQQIPLIL 8 Unmodified _YQQIPLIL_ 0 0 0 REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 494.2972106933594 2 494.29731 986.580068 0.2367 0.000117 0.18193 8.9929E-05 0.41863 0.00020693 494.29719426340927 78.418 0.53916 81.7 81.46 82 3.2816 115 57 3 0 0 0 0.82752 1 19502 19502 8.5933 0 1 169520 + 57462 28309 36219 36237 65983 65983 0.08624118971056305 YQQIPLIL 8 Unmodified _YQQIPLIL_ 0 0 0 REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense REV__L1ME4b_dup799|chr1:121251191-121252446:+|1.0407653575209237|0.0067061252772342|7.28|150.0|57|1|anti-sense MSMS UPN47_class_I_Rep_3 4 494.2978210449219 2 494.29731 986.580068 NaN NaN NaN NaN NaN NaN NaN 78.771 1 82.066 81.566 82.566 3.295 0 0 0 0.40404 1 19657 19657 5.2307 0 1 + 57463 28309 36219 36237 65984 65984 0.08624118971056305 YQQLGYDFL 9 Unmodified _YQQLGYDFL_ 0 0 0 REV__ENSG00000284395|ENST00000640283|PERCC1 REV__ENSG00000284395|ENST00000640283|PERCC1 MSMS UPN48_class_I_Rep_1 5 573.7766723632812 2 573.776939 1145.53933 NaN NaN NaN NaN NaN NaN NaN 47.544 1 51.066 50.566 51.566 3.5219 0 0 0 0.38784 1 9407 9407 3.5965 1.2938 1 + 57464 21454 36220 36238 65985 65985 -0.027622671392464326 YQQLRRRS 8 Unmodified _YQQLRRRS_ 0 0 0 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 MSMS UPN47_class_I_Rep_1 2 553.814208984375 2 553.812513 1105.61047 NaN NaN NaN NaN NaN NaN NaN 41.276 1 44.948 44.448 45.448 3.6719 0 0 0 0.40746 1 8271 8271 0.69038 0 1 + 57465 17553 36221 36239 65986 65986 0.06189290408792658 YQQRMELVC 9 Unmodified _YQQRMELVC_ 0 0 0 ENST00000602526.1_1_9:108337365-108363292:+|nuORF;ENST00000602661.5_1_9:108337365-108363450:+|nuORF ENST00000602526.1_1_9:108337365-108363292:+|nuORF ENST00000602526.1_1_9:108337365-108363292:+|nuORF MSMS UPN48_class_I_Rep_3 7 585.2750854492188 2 585.275726 1168.5369 NaN NaN NaN NaN NaN NaN NaN 27.927 1 31.678 31.178 32.178 3.7515 0 0 0 0.39428 1 3731 3731 2.0598 0 1 57466 7667 36222 36240 65987 65987 -0.04062762140210907 YQQRPQRL 8 Unmodified _YQQRPQRL_ 0 0 0 ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF;ENSG00000183696|ENST00000395564|UPP1 ENST00000495446.1_1_7:48146453-48147951:+|nuORF ENST00000495446.1_1_7:48146453-48147951:+|nuORF MSMS UPN47_class_I_Rep_1 2 544.8013305664062 2 544.801614 1087.58868 NaN NaN NaN NaN NaN NaN NaN 14.231 1 17.706 17.206 18.206 3.475 0 0 0 0.40746 1 519 519 0.69038 0 1 57467 5012 36223 36241 65988 65988 0.04838485660229708 YQQTEAGLEV 10 Unmodified _YQQTEAGLEV_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|184|3|anti-sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|184|3|anti-sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|184|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 569.275146484375 2 569.274761 1136.53497 0.10742 6.1154E-05 -0.10062 -5.7281E-05 0.0068035 3.8731E-06 569.2746950947075 42.822 0.62843 46.183 45.886 46.514 3.3611 49 42 2 0 0 0 0.56543 1 8832 8832 0 0 1 72869 57468 16067 36224 36242 65989 65989 -0.027837763528395953 YQQWSRVPF 9 Unmodified _YQQWSRVPF_ 0 0 0 L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|89|3|anti-sense L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|89|3|anti-sense L1MA9_dup11744|chr11:102354508-102356195:-|1.5721224950684485|0.0704931657745133|4.48|150.0|89|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 605.8035888671875 2 605.803823 1209.59309 0.42784 0.00025919 -0.56894 -0.00034466 -0.1411 -8.5477E-05 605.8037882838513 51.035 0.79554 54.559 54.185 54.981 3.5246 107 50 3 0 0 0 0.41587 1 10409 10409 6.7232 0 1 459780 57469 10098 36225 36243 65990 65990 -0.0033204991686943686 YQRAKTYA 8 Unmodified _YQRAKTYA_ 0 0 0 REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|36|2|sense REV__L1MB3_dup7740|chr8:67121153-67122874:-|1.106198133617364|0.040930689786385|4.76|151.0|36|2|sense MSMS UPN48_class_I_Rep_3 7 500.7660217285156 2 500.764166 999.513779 NaN NaN NaN NaN NaN NaN NaN 112.78 1 116.44 115.94 116.94 3.6568 0 0 0 0.40604 1 26805 26805 2.5775 1.7838 1 + 57470 25916 36226 36244 65991 65991 0.01400303128991709 YQREKKKK 8 Unmodified _YQREKKKK_ 0 0 0 L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|10|1|sense L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|10|1|sense L1MB8_dup2810|chr3:52646532-52647457:+|1.4218007600760396|0.0471137588086196|4.92|151.0|10|1|sense MSMS UPN47_class_I_Rep_3 4 554.3674926757812 2 554.33529 1106.65603 NaN NaN NaN NaN NaN NaN NaN 88.04 1 91.427 90.927 91.927 3.3873 0 0 0 0.40746 1 22075 22075 0.69038 0 1 57471 10990 36227 36245 65992 65992 0.10696515871177326 YQRELLQL 8 Unmodified _YQRELLQL_ 0 0 0 L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|15|1|sense L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|15|1|sense L1PA5_dup969|chr2:63210477-63216721:+|2.354129127339017|0.1019859691716651|4.53|151.0|15|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 531.8011474609375 2 531.800749 1061.58694 0.51772 0.00027532 -0.56611 -0.00030106 -0.048387 -2.5732E-05 531.8006017759162 58.788 0.97144 62.287 61.83 62.801 3.4987 154 59 4 0 0 0 0.82752 1 12732 12732 29.082 0.59474 1 1732200 57472 14541 36228 36246 65993 65993 0.05861431851622001 YQRIIFSKL 9 Unmodified _YQRIIFSKL_ 0 0 0 REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|80|3|sense REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|80|3|sense MSMS UPN46_class_I_Rep_3 1 584.3479614257812 2 584.347866 1166.68118 NaN NaN NaN NaN NaN NaN NaN 41.465 1 41.465 40.965 41.965 0 0 0 0 0.4007 1 8132 8132 0.52476 0 1 + 57473 28641 36229 36247 65994 65994 0.10450570673765469 YQRLKYLKFIN 11 Unmodified _YQRLKYLKFIN_ 0 0 0 REV__HAL1b_dup3959|chr12:118212069-118212207:+|1.2380618413068838|0.0041947446194937|8.21|151.0|1|1|sense REV__HAL1b_dup3959|chr12:118212069-118212207:+|1.2380618413068838|0.0041947446194937|8.21|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 495.9587707519531 3 495.9574 1484.85037 NaN NaN NaN NaN NaN NaN NaN 95.418 1 99.198 98.698 99.698 3.7804 0 0 0 0.38417 1 22678 22678 0.45452 0.046251 1 + 57474 23455 36230 36248 65995 65995 0.12733847236449947 YQRLKYLKFIN 11 Unmodified _YQRLKYLKFIN_ 0 0 0 REV__HAL1b_dup3959|chr12:118212069-118212207:+|1.2380618413068838|0.0041947446194937|8.21|151.0|1|1|sense REV__HAL1b_dup3959|chr12:118212069-118212207:+|1.2380618413068838|0.0041947446194937|8.21|151.0|1|1|sense MSMS UPN48_class_I_Rep_2 6 495.9590759277344 3 495.9574 1484.85037 NaN NaN NaN NaN NaN NaN NaN 95.781 1 99.561 99.061 100.06 3.7804 0 0 0 0.38417 1 22758 22758 1.2148 0.70888 1 + 57475 23455 36230 36248 65996 65996 0.12733847236449947 YQRNIRKK 8 Unmodified _YQRNIRKK_ 0 0 0 REV__L1MD_dup1133|chr2:161161865-161162367:-|1.151200753550431|0.2595414280900066|2.15|151.0|21|3|sense REV__L1MD_dup1133|chr2:161161865-161162367:-|1.151200753550431|0.2595414280900066|2.15|151.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 553.3312377929688 2 553.333082 1104.65161 NaN NaN NaN NaN NaN NaN NaN 44.937 1 48.293 47.793 48.793 3.3556 0 0 0 0.40625 1 9421 9421 2.3027 0 1 + 57476 27259 36231 36249 65997 65997 0.10347051448275124 YQRRKKGVYR 10 Unmodified _YQRRKKGVYR_ 0 0 0 REV__RIT1|p.E162Lfs*47|1|0.11|ENSG00000143622|chr1:155900564-155900565|-/AA|frameshift_variant REV__RIT1|p.E162Lfs*47|1|0.11|ENSG00000143622|chr1:155900564-155900565|-/AA|frameshift_variant MSMS UPN48_class_I_Rep_1 5 451.9332580566406 3 451.933588 1352.77894 NaN NaN NaN NaN NaN NaN NaN 92.465 1 96.089 95.589 96.589 3.624 0 0 0 0.53105 1 22221 22221 0.69767 0.19171 1 + 57477 32182 36232 36250 65998 65998 0.11665772322453449 YQRVPRYL 8 Unmodified _YQRVPRYL_ 0 0 0 REV__nc|ENSG00000048828|Q9NZB2-5|FAM120A REV__nc|ENSG00000048828|Q9NZB2-5|FAM120A MSMS UPN47_class_I_Rep_2 3 547.8084106445312 2 547.808908 1093.60326 NaN NaN NaN NaN NaN NaN NaN 36.989 1 40.388 39.888 40.888 3.3988 0 0 0 0.40404 1 7002 7002 5.2307 0 1 + 57478 17673 36233 36251 65999 65999 0.06020557808369631 YQRVRMRK 8 Unmodified _YQRVRMRK_ 0 0 0 REV__L1MEd_dup13630|chrX:153731180-153732321:-|1.076399524636643|0.1926735299554706|2.48|150.0|10|1|sense REV__L1MEd_dup13630|chrX:153731180-153732321:-|1.076399524636643|0.1926735299554706|2.48|150.0|10|1|sense MSMS UPN48_class_I_Rep_3 7 568.7576904296875 2 568.827109 1135.63967 NaN NaN NaN NaN NaN NaN NaN 25.553 1 29.321 28.821 29.821 3.769 0 0 0 0.40746 1 3124 3124 0.69038 0 1 + 57479 28519 36234 36252 66000 66000 0.07727111433428036 YQRWIWHN 8 Unmodified _YQRWIWHN_ 0 0 0 L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|6|1|sense L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|6|1|sense L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 601.7940063476562 2 601.796332 1201.57811 NaN NaN NaN NaN NaN NaN NaN 16.634 1 20.157 19.657 20.657 3.5224 0 0 0 0.40746 1 1102 1102 0.69038 0.088878 1 57480 12727 36235 36253 66001 66001 -0.014614969942158496 YQRWIWHN 8 Unmodified _YQRWIWHN_ 0 0 0 L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|6|1|sense L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|6|1|sense L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|6|1|sense MSMS UPN47_class_I_Rep_1 2 601.7943115234375 2 601.796332 1201.57811 NaN NaN NaN NaN NaN NaN NaN 16.692 1 20.214 19.714 20.714 3.5224 0 0 0 0.40746 1 1116 1116 0.69038 0.088878 1 57481 12727 36235 36253 66002 66002 -0.014614969942158496 YQSAKNLQA 9 Unmodified _YQSAKNLQA_ 0 0 0 REV__nc|ENSG00000211789|A0A075B6T6|TRAV12-2 REV__nc|ENSG00000211789|A0A075B6T6|TRAV12-2 MULTI-MSMS UPN46_class_I_Rep_3 1 511.7663269042969 2 511.766906 1021.51926 0.12395 6.3435E-05 -0.062262 -3.1864E-05 0.061691 3.1571E-05 511.7668206963842 32.981 0.88707 32.981 32.592 33.479 0 134 64 3 0 0 0 0.47197 1 5840 5840 3.5965 0 1 290190 + 57482 32101 36236 36254 66003 66003 0.009359819207929831 YQSKDWIR 8 Unmodified _YQSKDWIR_ 0 0 0 L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|50|2|sense L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|50|2|sense L1MC4a_dup3440|chr5:180852756-180855276:+|2.731030088221781|0.3219517396357181|3.08|151.0|50|2|sense MSMS UPN48_class_I_Rep_1 5 548.2828369140625 2 548.282723 1094.55089 NaN NaN NaN NaN NaN NaN NaN 36.661 1 40.168 39.668 40.668 3.507 0 0 0 0.40746 1 6144 6144 0.69038 0 1 57483 11561 36237 36255 66004 66004 0.007399746747296376 YQSNKVELY 9 Unmodified _YQSNKVELY_ 0 0 0 REV__ENSG00000204186|ENST00000374423|ZDBF2 REV__ENSG00000204186|ENST00000374423|ZDBF2 MULTI-MSMS UPN47_class_I_Rep_1 2 572.286865234375 2 572.287671 1142.56079 0.10258 5.8705E-05 0.052401 2.9988E-05 0.15498 8.8693E-05 572.2874840448077 45.964 0.49998 49.664 49.386 49.886 3.6999 49 30 2 0 0 0 0.42249 1 9643 9643 6.7232 0 1 78895 + 57484 21179 36238 36256 66005 66005 -0.004788821105194074 YQSPHLLL 8 Unmodified _YQSPHLLL_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MSMS UPN48_class_I_Rep_1 5 485.772216796875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 25.366 1 28.933 28.433 29.433 3.5667 0 0 0 0.40738 1 2944 2944 0.79363 0 1 57485 3783 36239 36257 66006 66006 0.042383752771456784 YQSPHLLL 8 Unmodified _YQSPHLLL_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MSMS UPN48_class_I_Rep_1 5 485.7720947265625 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 25.371 1 28.938 28.438 29.438 3.5667 0 0 0 0.40738 1 2946 2946 0.79363 0 1 57486 3783 36239 36257 66007 66007 0.042383752771456784 YQSVIYNRY 9 Unmodified _YQSVIYNRY_ 0 0 0 L1PA7_dup10752|chr13:21406392-21407020:-|1.1299834884929354|0.0257301602159697|5.46|151.0|31|2|anti-sense L1PA7_dup10752|chr13:21406392-21407020:-|1.1299834884929354|0.0257301602159697|5.46|151.0|31|2|anti-sense L1PA7_dup10752|chr13:21406392-21407020:-|1.1299834884929354|0.0257301602159697|5.46|151.0|31|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 603.3009033203125 2 603.301113 1204.58767 -0.17111 -0.00010323 -0.045661 -2.7547E-05 -0.21677 -0.00013078 603.3010448974942 30.543 1.0019 33.854 33.622 34.624 3.3116 116 79 2 0 0 0 0.46434 1 5159 5159 4.3292 0 1 160110 57487 14710 36240 36258 66008 66008 -0.006437734993596678 YQSVQVVI 8 Unmodified _YQSVQVVI_ 0 0 0 L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|25|3|sense L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|25|3|sense L1M4_dup17798|chr16:89310259-89311398:-|1.0501603337243102|0.1207550948965948|3.12|151.0|25|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 468.2630920410156 2 468.263468 934.512382 -0.56519 -0.00026466 0.039488 1.8491E-05 -0.52571 -0.00024617 468.2634521749183 37.185 0.56939 40.432 40.2 40.77 3.247 67 42 2 0 0 0 0.82752 1 7092 7092 3.9444 0 1 108820 57488 8871 36241 36259 66009 66009 0.04250669040231969 YQTAPKAGY 9 Unmodified _YQTAPKAGY_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS UPN46_class_I_Rep_3 1 499.7505798339844 2 499.750724 997.486896 0.03748 1.8731E-05 -0.156 -7.796E-05 -0.11852 -5.9229E-05 499.75058492936466 29.417 0.44781 29.417 29.281 29.729 0 54 38 2 0 0 0 0.23293 1 4715 4715 18.146 4.6385 1 75464 57489 947 36242 36260 66010 66010 -0.011948054821914411 YQTASNARVK 10 Unmodified _YQTASNARVK_ 0 0 0 Tigger1_dup1502|chr2:127355362-127356339:-|1.599696680889078|0.0235327932221426|6.09|151.0|15|2|sense Tigger1_dup1502|chr2:127355362-127356339:-|1.599696680889078|0.0235327932221426|6.09|151.0|15|2|sense Tigger1_dup1502|chr2:127355362-127356339:-|1.599696680889078|0.0235327932221426|6.09|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 569.3043212890625 2 569.304187 1136.59382 -0.16099 -9.1655E-05 0.46521 0.00026485 0.30421 0.00017319 569.304349026485 31.598 0.61172 34.897 34.631 35.243 3.2991 67 51 2 0 0 0 0.56118 1 5357 5357 2.9952 0.41776 1 60375 57490 33036 36243 36261 66011 66011 0.030987447321649597 YQTFHNRM 8 Unmodified _YQTFHNRM_ 0 0 0 REV__L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|29|3|sense REV__L1MD2_dup8083|chr12:118335846-118336789:+|4.54291835061814|0.0113846585404579|8.64|151.0|29|3|sense MSMS UPN47_class_I_Rep_3 4 548.3280029296875 2 548.753276 1095.492 NaN NaN NaN NaN NaN NaN NaN 111.78 1 115.3 114.8 115.8 3.5207 0 0 0 0.40746 1 27449 27449 0.69038 0 1 + 57491 27438 36244 36262 66012 66012 -0.05192824891219061 YQTRPPIPI 9 Unmodified _YQTRPPIPI_ 0 0 0 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 MSMS UPN47_class_I_Rep_3 4 542.8106079101562 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 34.57 1 37.834 37.334 38.334 3.2639 0 0 0 0.37476 1 6300 6300 6.7232 0 1 57492 2367 36245 36263 66013 66013 0.06922022231265146 YQVLRIYK 8 Unmodified _YQVLRIYK_ 0 0 0 REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|84|3|sense REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|84|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.5204467773438 2 541.821484 1081.62842 0.39501 0.00021402 -0.075672 -4.1001E-05 0.31934 0.00017302 541.8213553482306 45.426 1.4497 48.942 48.534 49.983 3.5162 316 101 4 0 0 0 0.82752 1 8637 8637 2.3027 0 1 4108100 + 57493 27414 36246 36264 66014 66014 0.09086612610917655 YQVLRIYK 8 Unmodified _YQVLRIYK_ 0 0 0 REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|84|3|sense REV__L1MD2_dup5629|chr9:96840742-96843657:+|1.143552475038651|0.0936542261421413|3.61|151.0|84|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.822265625 2 541.821484 1081.62842 0.44472 0.00024096 -0.14762 -7.9981E-05 0.29711 0.00016098 541.8213335547063 45.388 1.8061 49.025 48.468 50.274 3.6369 332 121 4 0 0 0 0.82752 1 8999 8999 4.756 0 1 4054400 + 57494 27414 36246 36264 66015 66015 0.09086612610917655 YQVPGIVK 8 Unmodified _YQVPGIVK_ 0 0 0 L1MB4_dup6206|chr12:4291722-4292133:+|1.1725192860235871|0.0739292863589284|3.99|148.0|11|2|sense L1MB4_dup6206|chr12:4291722-4292133:+|1.1725192860235871|0.0739292863589284|3.99|148.0|11|2|sense L1MB4_dup6206|chr12:4291722-4292133:+|1.1725192860235871|0.0739292863589284|3.99|148.0|11|2|sense MSMS UPN47_class_I_Rep_3 4 452.26898193359375 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 114.99 1 118.47 117.97 118.97 3.4802 0 0 0 0.40746 1 28257 28257 0.69038 0 1 57495 10543 36247 36265 66016 66016 0.06739276765483737 YQWKAPVTI 9 Unmodified _YQWKAPVTI_ 0 0 0 REV__ERVL-E-int_dup899|chr2:26222663-26223513:+|1.7776333655950487|0.0631220228003368|4.82|151.0|2|1|sense REV__ERVL-E-int_dup899|chr2:26222663-26223513:+|1.7776333655950487|0.0631220228003368|4.82|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 553.303955078125 2 553.305667 1104.59678 NaN NaN NaN NaN NaN NaN NaN 38.8 1 42.457 41.957 42.957 3.6565 0 0 0 0.32573 1 6710 6710 9.3831 0.63772 1 + 57496 23298 36248 36266 66017 66017 0.048666198569890184 YQWKCKRF 8 Unmodified _YQWKCKRF_ 0 0 0 ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A MSMS UPN47_class_I_Rep_1 2 579.7986450195312 2 579.797486 1157.58042 NaN NaN NaN NaN NaN NaN NaN 37.488 1 41.153 40.653 41.653 3.6652 0 0 0 0.40625 1 7119 7119 2.3027 0.4585 1 57497 4270 36249 36267 66018 66018 0.007932154192303642 YQYEPYLR 8 Unmodified _YQYEPYLR_ 0 0 0 nc|ENSG00000213996|Q9BZW4-2|TM6SF2;ENSG00000213996|ENST00000389363|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MSMS UPN47_class_I_Rep_3 4 566.2796020507812 2 566.277106 1130.53966 NaN NaN NaN NaN NaN NaN NaN 27.269 1 30.611 30.111 31.111 3.3422 0 0 0 0.40746 1 4115 4115 0.69038 0.088878 1 57498 5608 36250 36268 66019 66019 -0.0203884741940783 YQYHAVWVM 9 Unmodified _YQYHAVWVM_ 0 0 0 L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|112|3|anti-sense L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|112|3|anti-sense L1PB1_dup6112|chr7:139836087-139837822:+|7.94535504644022|0.0267330788209916|8.22|151.0|112|3|anti-sense MSMS UPN47_class_I_Rep_3 4 598.7813720703125 2 598.781502 1195.54845 NaN NaN NaN NaN NaN NaN NaN 14.935 1 18.301 17.801 18.801 3.3659 0 0 0 0.40038 1 666 666 0.6015 0 1 57499 15164 36251 36269 66020 66020 -0.0415019705458235 YQYPKKKY 8 Unmodified _YQYPKKKY_ 0 0 0 REV__L1ME2z_dup1900|chr5:38972467-38973549:+|1.1669281258896425|0.0747405078875771|3.96|151.0|6|1|sense REV__L1ME2z_dup1900|chr5:38972467-38973549:+|1.1669281258896425|0.0747405078875771|3.96|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 559.3031005859375 2 559.305667 1116.59678 NaN NaN NaN NaN NaN NaN NaN 13.605 1 16.993 16.493 17.493 3.388 0 0 0 0.4044 1 365 365 4.756 0 1 + 57500 27905 36252 36270 66021 66021 0.04314619856995705 YQYQLKKR 8 Unmodified _YQYQLKKR_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000034412 REV__CON__ENSEMBL:ENSBTAP00000034412 MSMS UPN48_class_I_Rep_2 6 563.7938232421875 2 563.822015 1125.62948 NaN NaN NaN NaN NaN NaN NaN 44.814 1 48.576 48.076 49.076 3.7617 0 0 0 0.40625 1 8584 8584 2.3027 0.24298 1 + + 57501 17473 36253 36271 66022 66022 0.07168826979818732 YQYRQEIL 8 Unmodified _YQYRQEIL_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MSMS UPN47_class_I_Rep_1 2 556.790771484375 2 556.790381 1111.56621 NaN NaN NaN NaN NaN NaN NaN 63.151 1 66.511 66.011 67.011 3.3595 0 0 0 0.40604 1 14925 14925 2.5775 0.51773 1 57502 768 36254 36272 66023 66023 0.014888414719507637 YQYSKQTI 8 Unmodified _YQYSKQTI_ 0 0 0 L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|28|1|sense L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|28|1|sense L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.2658081054688 2 515.763832 1029.51311 0.32355 0.00016688 -0.24355 -0.00012562 0.080001 4.1261E-05 515.7636041611266 35.162 1.045 38.836 38.506 39.551 3.6735 238 104 3 0 0 0 0.82752 1 5893 5893 8.7454 0 1 713950 57503 14115 36255 36273 66024 66024 -0.00046536310719602625 YQYSKQTI 8 Unmodified _YQYSKQTI_ 0 0 0 L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|28|1|sense L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|28|1|sense L1PA16_dup6837|chr8:67463516-67466772:-|1.0084737206068737|0.0176960777097781|5.83|144.0|28|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.764892578125 2 515.763832 1029.51311 0.24718 0.00012749 -0.1556 -8.0254E-05 0.091579 4.7233E-05 515.7636574668796 35.115 1.0891 38.787 38.448 39.537 3.6721 266 115 3 0 0 0 0.82752 1 5831 5831 3.5965 0 1 756040 57504 14115 36255 36273 66025 66025 -0.00046536310719602625 YQYVIWVIW 9 Unmodified _YQYVIWVIW_ 0 0 0 REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|190|2|anti-sense REV__L1MA4A_dup2927|chr8:42025508-42029559:-|14.737335508544978|0.1410847084598031|6.71|151.0|190|2|anti-sense MSMS UPN46_class_I_Rep_3 1 635.3359375 2 635.336967 1268.65938 NaN NaN NaN NaN NaN NaN NaN 62.612 1 62.612 62.112 63.112 0 0 0 0 0.40038 1 14007 14007 0.6015 0.076735 1 + 57505 25259 36256 36274 66026 66026 0.03579765925178435 YQYVKRQEF 9 Unmodified _YQYVKRQEF_ 0 0 0 REV__ENSG00000169554.22,ZEB2,chr2,-,I27.1,144394481,144396411|27|24.2|4|intron REV__ENSG00000169554.22,ZEB2,chr2,-,I27.1,144394481,144396411|27|24.2|4|intron MULTI-MSMS UPN46_class_I_Rep_3 1 420.88385009765625 3 420.8839 1259.62987 0.01724 7.2562E-06 -0.029914 -1.259E-05 -0.012674 -5.3342E-06 420.88383936513316 58.507 1.3456 58.507 57.945 59.291 0 386 151 4 0 0 0 0.26948 1 12810 12810 10.8 0 1 1310700 + 57506 20317 36257 36275 66027 66027 0.010442019090305621 YQYVYCYS 8 Unmodified _YQYVYCYS_ 0 0 0 REV__HAL1_dup4065|chr3:4618228-4619472:-|1.6474920314867694|0.0050757786215936|8.34|151.0|14|1|sense REV__HAL1_dup4065|chr3:4618228-4619472:-|1.6474920314867694|0.0050757786215936|8.34|151.0|14|1|sense MSMS UPN48_class_I_Rep_1 5 544.7222900390625 2 544.723318 1087.43208 NaN NaN NaN NaN NaN NaN NaN 118.94 1 122.56 122.06 123.06 3.6189 0 0 0 0.4044 1 29024 29024 4.756 1.8668 1 + 57507 23422 36258 36276 66028 66028 -0.10813560345150108 YQYWFINY 8 Unmodified _YQYWFINY_ 0 0 0 L1MC3_dup4700|chr6:72775394-72776145:+|1.2223331368691783|0.0044549742521561|8.1|149.0|17|2|sense;L1MC2_dup2187|chr6:45519223-45519770:-|1.7293562227778696|0.00739763172966|7.87|151.0|6|1|sense L1MC3_dup4700|chr6:72775394-72776145:+|1.2223331368691783|0.0044549742521561|8.1|149.0|17|2|sense L1MC3_dup4700|chr6:72775394-72776145:+|1.2223331368691783|0.0044549742521561|8.1|149.0|17|2|sense MSMS UPN47_class_I_Rep_2 3 598.7726440429688 2 598.7742 1195.53385 NaN NaN NaN NaN NaN NaN NaN 77.956 1 81.299 80.799 81.799 3.3428 0 0 0 0.40746 1 19356 19356 0.69038 0 1 57508 11236 36259 36277 66029 66029 -0.05609945931041693 YRAELYLLSC 10 Unmodified _YRAELYLLSC_ 0 0 0 REV__LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|1|1|sense REV__LTR9C_dup105|chr13:49998943-49999517:+|1.7907567277451149|0.2223635203298319|3.01|151.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 615.810302734375 2 615.812999 1229.61144 NaN NaN NaN NaN NaN NaN NaN 32.091 1 35.793 35.293 36.293 3.7015 0 0 0 0.53105 1 4834 4834 1.4819 0.68827 1 + 57509 31044 36260 36278 66030 66030 0.0058232394283095346 YRAIESHD 8 Unmodified _YRAIESHD_ 0 0 0 REV__Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|10|1|sense REV__Tigger1_dup3849|chr5:14220059-14222346:+|1.069974679643637|0.0727012626136718|3.88|151.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 495.8338317871094 2 495.735606 989.456658 NaN NaN NaN NaN NaN NaN NaN 37.578 1 41.083 40.583 41.583 3.5052 0 0 0 0.40604 1 6405 6405 2.5775 0 1 + 57510 32429 36261 36279 66031 66031 -0.038491641473797245 YRALVNEL 8 Unmodified _YRALVNEL_ 0 0 0 HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|56|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|56|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|56|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 489.2744140625 2 489.274367 976.53418 -0.13763 -6.7341E-05 0.095834 4.6889E-05 -0.0418 -2.0452E-05 489.2744009202105 45.053 0.54605 48.753 48.504 49.05 3.6999 53 32 2 0 0 0 0.82752 1 9409 9409 6.7232 0 1 73579 57511 7930 36262 36280 66032 66032 0.04497473788796924 YRALVNEL 8 Unmodified _YRALVNEL_ 0 0 0 HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|56|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|56|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|56|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 489.2744140625 2 489.274367 976.53418 -0.0064472 -3.1545E-06 -0.087506 -4.2814E-05 -0.093953 -4.5969E-05 489.27438523258 45.626 0.53207 48.87 48.664 49.196 3.2441 44 31 2 0 0 0 0.82752 2 9708 9657;9708 7.2892 0 1 82087 57512 7930 36262 36280 66033;66034 66034 0.04497473788796924 YRALYPFR 8 Unmodified _YRALYPFR_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MSMS UPN48_class_I_Rep_1 5 543.2982177734375 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 35.989 1 39.5 39 40 3.5101 0 0 0 0.40746 1 5957 5957 0.69038 0 1 57513 1750 36263 36281 66035 66035 0.04289172779635919 YRAPTGTTLNH 11 Unmodified _YRAPTGTTLNH_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MSMS UPN48_class_I_Rep_2 6 615.8128051757812 2 615.814919 1229.61528 NaN NaN NaN NaN NaN NaN NaN 33.067 1 36.717 36.217 37.217 3.6497 0 0 0 0.38417 1 5181 5181 1.0715 0.27783 1 + 57514 18701 36264 36282 66036 66036 0.00966129760900003 YRAQPSVSL 9 Unmodified _YRAQPSVSL_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS UPN47_class_I_Rep_1 2 510.777587890625 2 510.777274 1019.53999 -0.17492 -8.9346E-05 -0.38603 -0.00019718 -0.56095 -0.00028652 510.77699469851467 38.806 0.52281 42.471 42.208 42.731 3.6652 64 33 3 0 0 0 0.43982 1 7516 7516 5.7319 0.43497 1 99077 57515 5697 36265 36283 66037 66037 0.031005723004682295 YRAQPSVSL 9 Unmodified _YRAQPSVSL_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS UPN47_class_I_Rep_2 3 510.7757263183594 2 510.777274 1019.53999 -0.26778 -0.00013678 -0.15927 -8.1352E-05 -0.42705 -0.00021813 510.7768657748537 39.054 0.48327 42.433 42.253 42.736 3.3785 45 25 2 0 0 0 0.31407 1 7606 7606 13.042 0.80181 1 80101 57516 5697 36265 36283 66038 66038 0.031005723004682295 YRAQPSVSL 9 Unmodified _YRAQPSVSL_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS UPN47_class_I_Rep_3 4 510.7773742675781 2 510.777274 1019.53999 -0.22301 -0.00011391 -0.37653 -0.00019232 -0.59954 -0.00030623 510.77696385505686 39.201 0.58263 42.439 42.263 42.846 3.2379 62 39 2 0 0 0 0.43982 1 7785 7785 5.7319 0.43497 1 77962 57517 5697 36265 36283 66039 66039 0.031005723004682295 YRARYWRV 8 Unmodified _YRARYWRV_ 0 0 0 MER21C_dup3462|chr11:4026486-4027182:-|1.3426813794708492|0.0226854307360505|5.89|151.0|28|1|anti-sense MER21C_dup3462|chr11:4026486-4027182:-|1.3426813794708492|0.0226854307360505|5.89|151.0|28|1|anti-sense MER21C_dup3462|chr11:4026486-4027182:-|1.3426813794708492|0.0226854307360505|5.89|151.0|28|1|anti-sense MSMS UPN46_class_I_Rep_3 1 585.3193969726562 2 585.319974 1168.6254 NaN NaN NaN NaN NaN NaN NaN 58.436 1 58.436 57.936 58.936 0 0 0 0 0.40625 1 12862 12862 2.3027 0.4585 1 57518 15899 36266 36284 66040 66040 0.04782782276765829 YRATWHLF 8 Unmodified _YRATWHLF_ 0 0 0 REV__ENST00000597347.5_1_3:180893045-181281553:+|nuORF REV__ENST00000597347.5_1_3:180893045-181281553:+|nuORF MSMS UPN48_class_I_Rep_1 5 547.28173828125 2 547.282526 1092.5505 NaN NaN NaN NaN NaN NaN NaN 34.734 1 38.248 37.748 38.748 3.5144 0 0 0 0.40738 1 5594 5594 0.79363 0 1 + 57519 23197 36267 36285 66041 66041 0.007925997455458855 YRAYASLK 8 Unmodified _YRAYASLK_ 0 0 0 THE1B-int_dup2348|chr8:125369191-125370681:-|1.6031141811987784|0.1038413313965315|3.95|151.0|60|2|anti-sense;THE1A-int_dup1161|chr13:28077625-28078704:-|5.633368458914108|0.0143474810621654|8.62|151.0|34|1|anti-sense THE1B-int_dup2348|chr8:125369191-125370681:-|1.6031141811987784|0.1038413313965315|3.95|151.0|60|2|anti-sense THE1B-int_dup2348|chr8:125369191-125370681:-|1.6031141811987784|0.1038413313965315|3.95|151.0|60|2|anti-sense MSMS UPN46_class_I_Rep_3 1 486.26849365234375 2 486.269084 970.523616 NaN NaN NaN NaN NaN NaN NaN 73.484 1 73.484 72.984 73.984 0 0 0 0 0.40746 1 17034 17034 0.69038 0 1 57520 32867 36268 36286 66042 66042 0.037174911343640815 YRCAVHHH 8 Unmodified _YRCAVHHH_ 0 0 0 AluSz6_dup15326|chr6:15281966-15282239:-|1.4545547569793404|0.0026449335392063|9.1|151.0|16|3|anti-sense AluSz6_dup15326|chr6:15281966-15282239:-|1.4545547569793404|0.0026449335392063|9.1|151.0|16|3|anti-sense AluSz6_dup15326|chr6:15281966-15282239:-|1.4545547569793404|0.0026449335392063|9.1|151.0|16|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 511.7398986816406 2 511.740502 1021.46645 -0.50395 -0.00025789 -0.96576 -0.00049422 -1.4697 -0.00075211 511.7396625956442 20.514 0.062555 23.863 23.809 23.872 3.3496 5 4 2 0 0 0 0.72333 1 2122 2122 0.79363 0 1 19744 57521 381 36269 36287 66043 66043 -0.04342254622997643 YRCWFWGC 8 Unmodified _YRCWFWGC_ 0 0 0 ENST00000393599.2_1_19:10677414-10677732:-|nuORF ENST00000393599.2_1_19:10677414-10677732:-|nuORF ENST00000393599.2_1_19:10677414-10677732:-|nuORF MSMS UPN47_class_I_Rep_2 3 560.8154907226562 2 560.728215 1119.44188 NaN NaN NaN NaN NaN NaN NaN 65.576 1 68.832 68.332 69.332 3.2556 0 0 0 0.40746 1 15699 15699 0.69038 0.088878 1 57522 6536 36270 36288 66044 66044 -0.11306650820711184 YRCWNWHL 8 Unmodified _YRCWNWHL_ 0 0 0 REV__nc|ENSG00000169398|Q05397-4|PTK2 REV__nc|ENSG00000169398|Q05397-4|PTK2 MSMS UPN47_class_I_Rep_1 2 589.27392578125 2 589.271635 1176.52872 NaN NaN NaN NaN NaN NaN NaN 77.315 1 80.744 80.244 81.244 3.4289 0 0 0 0.40746 1 19177 19177 0.69038 0.088878 1 + 57523 32053 36271 36289 66045 66045 -0.052485282746602024 YRDDHMVF 8 Unmodified _YRDDHMVF_ 0 0 0 L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|178|3|anti-sense L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|178|3|anti-sense L1PA16_dup11163|chr13:40817156-40819854:+|1.3074442834309277|0.2802381900124443|2.22|151.0|178|3|anti-sense MSMS UPN47_class_I_Rep_2 3 541.7396240234375 2 541.739834 1081.46511 NaN NaN NaN NaN NaN NaN NaN 29.215 1 32.707 32.207 33.207 3.4923 0 0 0 0.40738 1 4646 4646 0.79363 0 1 57524 14025 36272 36290 66046 66046 -0.07235933502420266 YRDDPESL 8 Unmodified _YRDDPESL_ 0 0 0 REV__nc|ENSG00000072364|Q9UHB7-2|AFF4 REV__nc|ENSG00000072364|Q9UHB7-2|AFF4 MSMS UPN47_class_I_Rep_2 3 497.7270812988281 2 497.727446 993.44034 NaN NaN NaN NaN NaN NaN NaN 36.76 1 40.159 39.659 40.659 3.3988 0 0 0 0.40746 1 6933 6933 0.69038 0 1 + 57525 17827 36273 36291 66047 66047 -0.05664290104141401 YRDLPFFP 8 Unmodified _YRDLPFFP_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|188|3|anti-sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|188|3|anti-sense MSMS UPN47_class_I_Rep_2 3 528.2608032226562 2 527.77146 1053.52837 NaN NaN NaN NaN NaN NaN NaN 25.33 1 28.813 28.313 29.313 3.483 0 0 0 0.40738 1 3498 3498 0.79363 0 1 + 57526 25556 36274 36292 66048 66048 0.0037437527712427254 YRDSVTSRLY 10 Unmodified _YRDSVTSRLY_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MULTI-MSMS UPN47_class_I_Rep_1 2 630.3222045898438 2 630.322576 1258.6306 0.26969 0.00016999 -0.088857 -5.6009E-05 0.18083 0.00011398 630.3225452191198 49.029 0.26193 52.688 52.573 52.835 3.6592 21 17 2 0 0 0 0.56118 1 10624 10624 2.9952 0.49676 1 44844 + 57527 19666 36275 36293 66049 66049 0.01162996558082341 YRDSVTSRLY 10 Unmodified _YRDSVTSRLY_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 630.322576 1258.6306 0.26969 0.00016999 -0.088857 -5.6009E-05 0.18083 0.00011398 630.3225452191198 49.029 0.26193 52.688 52.573 52.835 3.6592 0.00028614 0.00010766 NaN 2.9952 21 17 2 NaN NaN NaN NaN 0 NaN NaN 0 44844 + 57528 19666 36275 36293 0.01162996558082341 YRDSVTSRLY 10 Unmodified _YRDSVTSRLY_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 630.322576 1258.6306 0.40375 0.0002545 -0.83544 -0.0005266 -0.43169 -0.0002721 630.8233445096573 49.353 0.2319 52.699 52.544 52.775 3.3465 0.011646 -0.00083352 NaN 2.9952 17 15 2 NaN NaN NaN NaN 0 NaN NaN 0 49587 + 57529 19666 36275 36293 0.01162996558082341 YRDSVTSRLY 10 Unmodified _YRDSVTSRLY_ 0 0 0 REV__ENSG00000151790|ENST00000536354|TDO2 REV__ENSG00000151790|ENST00000536354|TDO2 MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 630.322576 1258.6306 0.46289 0.00029177 0.27304 0.0001721 0.73593 0.00046387 630.3228125946649 49.441 0.14428 52.676 52.629 52.774 3.2345 -0.011932 0.00056389 NaN 2.9952 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 49466 + 57530 19666 36275 36293 0.01162996558082341 YRDVAKNAL 9 Unmodified _YRDVAKNAL_ 0 0 0 ENSG00000068650|ENST00000375645|ATP11A ENSG00000068650|ENST00000375645|ATP11A ENSG00000068650|ENST00000375645|ATP11A MSMS UPN47_class_I_Rep_1 2 525.2904663085938 2 525.290548 1048.56654 NaN NaN NaN NaN NaN NaN NaN 46.407 1 50.106 49.606 50.606 3.6999 0 0 0 0.38916 1 9839 9839 3.2813 0.28607 1 57531 1051 36276 36294 66050 66050 0.044202611917853574 YRDYFNRY 8 Unmodified _YRDYFNRY_ 0 0 0 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 MSMS UPN48_class_I_Rep_2 6 598.7767333984375 2 598.777805 1195.54106 NaN NaN NaN NaN NaN NaN NaN 27.315 1 30.946 30.446 31.446 3.6311 0 0 0 0.40625 1 3602 3602 2.3027 0.24298 1 + 57532 21267 36277 36295 66051 66051 -0.04889213330625353 YREALKKN 8 Unmodified _YREALKKN_ 0 0 0 L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|9|1|sense L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|9|1|sense L1MEc_dup2609|chr2:121472445-121474137:+|1.2944262007794438|0.1059757785386091|3.61|151.0|9|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 511.2925109863281 2 511.293091 1020.57163 -0.27168 -0.00013891 -1.0894 -0.00055702 -1.3611 -0.00069593 511.29244125461645 35.296 0.69312 38.721 38.47 39.163 3.4253 63 44 2 0 0 0 0.82752 1 6484 6484 0.69038 0 1 109880 57533 13085 36278 36296 66052 66052 0.06216565054410239 YREELRNM 8 Unmodified _YREELRNM_ 0 0 0 REV__ENST00000484687.1_1_3:81584326-81627079:-|nuORF REV__ENST00000484687.1_1_3:81584326-81627079:-|nuORF MSMS UPN47_class_I_Rep_1 2 555.7716064453125 2 555.771665 1109.52878 NaN NaN NaN NaN NaN NaN NaN 15.274 1 18.771 18.271 19.271 3.4968 0 0 0 0.40746 1 775 775 0.69038 0 1 + 57534 18528 36279 36297 66053 66053 -0.02160573065339122 YRERINKW 8 Unmodified _YRERINKW_ 0 0 0 REV__ENST00000539508.5_1_9:13136054-13190160:-|nuORF REV__ENST00000539508.5_1_9:13136054-13190160:-|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 582.816650390625 2 582.817264 1163.61998 0.12661 7.3788E-05 -1.2035 -0.00070142 -1.0769 -0.00062763 582.8165953487094 43.227 0.54441 46.585 46.343 46.888 3.358 67 37 2 0 0 0 0.82752 1 8892 8892 4.756 0.81161 1 93111 + 57535 18348 36280 36298 66054 66054 0.04471058694321073 YREWYEKYY 9 Unmodified _YREWYEKYY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS UPN47_class_I_Rep_1 2 467.21490478515625 3 467.215427 1398.62445 -0.37587 -0.00017561 -0.76415 -0.00035702 -1.14 -0.00053263 467.2150695596961 22.634 0.48363 26.339 26.137 26.62 3.7042 63 43 3 0 0 0 0.41587 1 2658 2658 7.1017 0.90987 1 94105 57536 2380 36281 36299 66055 66055 -0.05891521673424904 YREWYEKYY 9 Unmodified _YREWYEKYY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MATCH UPN47_class_I_Rep_2 3 3 467.215427 1398.62445 -0.36681 -0.00017138 -0.74921 -0.00035004 -1.116 -0.00052142 467.21512405865707 23.107 0.64929 26.552 26.256 26.905 3.4447 0.036899 -0.00020715 NaN 7.1017 88 58 2 NaN NaN NaN NaN 0 NaN NaN 0 88664 57537 2380 36281 36299 -0.05891521673424904 YREWYEKYY 9 Unmodified _YREWYEKYY_ 0 0 0 ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;RBBP6|p.E952Sfs*3|1|0.03|ENSG00000122257|chr16:24569543-24569543|A/-|frameshift_variant ENSG00000122257|ENST00000319715|RBBP6 ENSG00000122257|ENST00000319715|RBBP6 MULTI-MATCH UPN47_class_I_Rep_3 4 3 467.215427 1398.62445 -0.78562 -0.00036705 -0.19436 -9.0808E-05 -0.97998 -0.00045786 467.2153302851814 23.304 0.91149 26.654 26.354 27.266 3.3503 0.13918 0.00057055 NaN 7.1017 97 72 2 NaN NaN NaN NaN 0 NaN NaN 0 62917 57538 2380 36281 36299 -0.05891521673424904 YREYLRQL 8 Unmodified _YREYLRQL_ 0 0 0 L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|25|2|sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|25|2|sense L1MDa_dup706|chr2:99962893-99964660:+|1.1262614832525857|0.0179585950420865|5.97|147.0|25|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 570.8116455078125 2 570.811648 1139.60874 0.41508 0.00023693 -0.036813 -2.1013E-05 0.37826 0.00021592 570.8115362692107 42.903 0.69392 46.661 46.276 46.97 3.7579 115 57 3 0 0 0 0.82752 1 8015 8015 4.3292 0 1 312340 57539 12153 36282 36300 66056 66056 0.0445223660017291 YRFKKLNKKVR 11 Unmodified _YRFKKLNKKVR_ 0 0 0 REV__chr2:173363895-173364000|147|12.7|0.73|4.12|+|ENST00000435616|CDCA7,CDCA7 REV__chr2:173363895-173364000|147|12.7|0.73|4.12|+|ENST00000435616|CDCA7,CDCA7 MSMS UPN46_class_I_Rep_3 1 494.0452880859375 3 493.980539 1478.91979 NaN NaN NaN NaN NaN NaN NaN 46.034 1 46.034 45.534 46.534 0 0 0 0 0.38417 1 9406 9406 0.45452 0 1 + 57540 17444 36283 36301 66057 66057 0.19948350975846552 YRFKWRLF 8 Unmodified _YRFKWRLF_ 0 0 0 REV__L1MC1_dup7397|chr9:77778243-77779974:+|3.119288644205006|0.0406064747740536|6.26|151.0|68|1|anti-sense REV__L1MC1_dup7397|chr9:77778243-77779974:+|3.119288644205006|0.0406064747740536|6.26|151.0|68|1|anti-sense MSMS UPN48_class_I_Rep_3 7 405.898193359375 3 405.897704 1214.67128 NaN NaN NaN NaN NaN NaN NaN 35.697 1 39.363 38.863 39.863 3.6667 0 0 0 0.40501 1 5822 5822 3.9444 0 1 + 57541 26596 36284 36302 66058 66058 0.07253427459022532 YRFLFLLCC 9 Unmodified _YRFLFLLCC_ 0 0 0 L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|213|2|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|213|2|anti-sense L1PA15_dup5475|chrX:155605237-155609559:+|1.355685118729964|0.0815204284765249|4.06|151.0|213|2|anti-sense MSMS UPN48_class_I_Rep_3 7 589.2807006835938 2 589.298473 1176.58239 NaN NaN NaN NaN NaN NaN NaN 33.421 1 37.101 36.601 37.601 3.6797 0 0 0 0.4029 1 5194 5194 0 0 1 57542 13953 36285 36303 66059 66059 0.0011650811286472162 YRFLFYPV 8 Unmodified _YRFLFYPV_ 0 0 0 L1MC4_dup18569|chr13:50960916-50961810:-|1.8852934822897496|0.1134989655001923|4.05|151.0|66|3|anti-sense L1MC4_dup18569|chr13:50960916-50961810:-|1.8852934822897496|0.1134989655001923|4.05|151.0|66|3|anti-sense L1MC4_dup18569|chr13:50960916-50961810:-|1.8852934822897496|0.1134989655001923|4.05|151.0|66|3|anti-sense MSMS UPN48_class_I_Rep_3 7 552.7619018554688 2 552.797478 1103.5804 NaN NaN NaN NaN NaN NaN NaN 27.298 1 31.053 30.553 31.553 3.7555 0 0 0 0.40738 1 3566 3566 0.79363 0 1 57543 11426 36286 36304 66060 66060 0.03275538690877511 YRFLKRHA 8 Unmodified _YRFLKRHA_ 0 0 0 Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|4|1|sense Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|4|1|sense Tigger13a_dup2743|chr17:20140082-20140753:-|1.6427885177669912|0.0048997214907172|8.39|151.0|4|1|sense MSMS UPN47_class_I_Rep_3 4 546.2586669921875 2 545.817067 1089.61958 NaN NaN NaN NaN NaN NaN NaN 23.857 1 27.208 26.708 27.708 3.3509 0 0 0 0.40746 1 3106 3106 0.69038 0 1 57544 33229 36287 36305 66061 66061 0.07835683765142676 YRFLRRFG 8 Unmodified _YRFLRRFG_ 0 0 0 ENSG00000147443|ENST00000276420|DOK2 ENSG00000147443|ENST00000276420|DOK2 ENSG00000147443|ENST00000276420|DOK2 MULTI-MSMS UPN48_class_I_Rep_1 5 557.8170166015625 2 557.817067 1113.61958 0.4698 0.00026206 -2.1683 -0.0012095 -1.6985 -0.00094744 557.816241165174 45.568 0.37526 49.084 48.94 49.316 3.5162 31 25 2 0 0 0 0.82752 1 8807 8807 0.79363 0.10326 1 127280 57545 3475 36288 36306 66062 66062 0.06731683765110574 YRFLSEYR 8 Unmodified _YRFLSEYR_ 0 0 0 REV__L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|91|2|anti-sense REV__L1MB8_dup16358|chr22:46926945-46928950:+|2.764524251754442|0.115512797971793|4.58|151.0|91|2|anti-sense MSMS UPN48_class_I_Rep_3 7 567.2899169921875 2 567.290548 1132.56654 NaN NaN NaN NaN NaN NaN NaN 44.412 1 48.049 47.549 48.549 3.6372 0 0 0 0.40746 1 8385 8385 0.69038 0 1 + 57546 26391 36289 36307 66063 66063 0.005562611917866889 YRFMSFSCSC 10 Unmodified _YRFMSFSCSC_ 0 0 0 REV__Tigger3_dup288|chr4:109500959-109501401:+|1.488928907269896|0.0655101437995967|4.51|151.0|8|2|sense REV__Tigger3_dup288|chr4:109500959-109501401:+|1.488928907269896|0.0655101437995967|4.51|151.0|8|2|sense MSMS UPN48_class_I_Rep_3 7 615.7417602539062 2 615.740662 1229.46677 NaN NaN NaN NaN NaN NaN NaN 112.03 1 115.69 115.19 116.19 3.6614 0 0 0 0.53105 1 26604 26604 1.4819 0.79152 1 + 57547 32704 36290 36308 66064 66064 -0.138783838002837 YRFRITKM 8 Unmodified _YRFRITKM_ 0 0 0 Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|22|2|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|22|2|anti-sense Zaphod_dup1813|chr15:72320910-72321302:-|1.1192499357528591|0.2265294288532323|2.3|151.0|22|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.8140869140625 2 557.813136 1113.61172 NaN NaN NaN NaN NaN NaN NaN 99.133 1 102.74 102.24 103.24 3.6065 0 0 0 0.40746 1 23931 23931 0.69038 0 1 57548 33469 36291 36309 66065 66065 0.059457884533230754 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_1 2 490.78204345703125 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 112.08 1 115.65 115.15 116.15 3.572 0 0 0 0.40604 1 27657 27657 2.5775 0 1 + 57549 25223 36292 36310 66066 66066 0.05850965656793505 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_2 3 490.7655334472656 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 114.18 1 117.69 117.19 118.19 3.5109 0 0 0 0.40738 1 27795 27795 0.79363 0 1 + 57550 25223 36292 36310 66067 66067 0.05850965656793505 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_2 3 490.78167724609375 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 114.69 1 118.19 117.69 118.69 3.5039 0 0 0 0.40738 1 27932 27932 0.79363 0 1 + 57551 25223 36292 36310 66068 66068 0.05850965656793505 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7817687988281 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 110.97 1 114.5 114 115 3.529 0 0 0 0.40738 1 27224 27224 0.79363 0 1 + 57552 25223 36292 36310 66069 66069 0.05850965656793505 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7809143066406 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 118.72 1 122.14 121.64 122.64 3.4238 0 0 0 0.40738 1 29290 29290 0.79363 0 1 + 57553 25223 36292 36310 66070 66070 0.05850965656793505 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN48_class_I_Rep_1 5 490.7823181152344 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 27.647 1 31.21 30.71 31.71 3.5629 0 0 0 0.40746 1 3592 3592 0.69038 0 1 + 57554 25223 36292 36310 66071 66071 0.05850965656793505 YRGLYPVL 8 Unmodified _YRGLYPVL_ 0 0 0 REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense REV__L1MA4_dup8972|chr16:68129978-68131240:-|2.546449550080356|0.0231381011209693|6.78|151.0|60|2|anti-sense MSMS UPN48_class_I_Rep_3 7 490.7817077636719 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 110.95 1 114.61 114.11 115.11 3.6654 0 0 0 0.40604 1 26321 26321 2.5775 0 1 + 57555 25223 36292 36310 66072 66072 0.05850965656793505 YRGSAPADPPG 11 Unmodified _YRGSAPADPPG_ 0 0 0 ENST00000485713.5_1_7:150771853-150772780:+|nuORF ENST00000485713.5_1_7:150771853-150772780:+|nuORF ENST00000485713.5_1_7:150771853-150772780:+|nuORF MSMS UPN47_class_I_Rep_2 3 544.2619018554688 2 544.261988 1086.50942 NaN NaN NaN NaN NaN NaN NaN 21.477 1 24.902 24.402 25.402 3.4241 0 0 0 0.38417 1 2407 2407 0 0 1 57556 7033 36293 36311 66073 66073 -0.030372060846048043 YRHAENRF 8 Unmodified _YRHAENRF_ 0 0 0 CON__REFSEQ:XP_585019 CON__REFSEQ:XP_585019 CON__REFSEQ:XP_585019 MSMS UPN48_class_I_Rep_2 6 546.7713623046875 2 546.770314 1091.52608 NaN NaN NaN NaN NaN NaN NaN 75.791 1 79.392 78.892 79.892 3.6011 0 0 0 0.40625 1 17886 17886 2.3027 0.24298 1 + 57557 655 36294 36312 66074 66074 -0.01602660407957046 YRHFDVYF 8 Unmodified _YRHFDVYF_ 0 0 0 REV__L1M5_dup19708|chr6:42004882-42005259:+|1.1910137250399198|0.0130181582392502|6.52|151.0|8|2|sense REV__L1M5_dup19708|chr6:42004882-42005259:+|1.1910137250399198|0.0130181582392502|6.52|151.0|8|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.7700805664062 2 573.771991 1145.52943 0.38638 0.00022169 -1.3334 -0.00076508 -0.94705 -0.00054339 573.7710968599737 77.914 0.40784 81.343 81.124 81.532 3.4289 65 40 2 0 0 0 0.82752 1 19404 19404 3.9444 0 1 95302 + 57558 24632 36295 36313 66075 66075 -0.03751410353970641 YRHLVVRQKL 10 Unmodified _YRHLVVRQKL_ 0 0 0 REV__L1MC4_dup21374|chr17:5370260-5370762:-|1.1406172692733842|0.3233768785275352|1.82|151.0|35|3|anti-sense REV__L1MC4_dup21374|chr17:5370260-5370762:-|1.1406172692733842|0.3233768785275352|1.82|151.0|35|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 437.8914489746094 3 437.938451 1310.79352 0.034365 1.505E-05 -3.6937 -0.0016176 -3.6593 -0.0016026 437.93663728548415 50.257 0.12128 53.878 53.784 53.906 3.621 6 5 2 0 0 0 0.84575 1 10157 10157 0.62683 0.39098 1 43895 + 57559 26874 36296 36314 66076 66076 0.15055844470589363 YRHNLPNL 8 Unmodified _YRHNLPNL_ 0 0 0 L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|51|2|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|51|2|sense L1MA7_dup1477|chr3:123921866-123924954:+|2.462705838231186|0.304472393822124|3.02|150.0|51|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 513.7786865234375 2 513.777608 1025.54066 0.3277 0.00016837 0.60934 0.00031306 0.93704 0.00048143 513.777933666948 77.881 0.4975 81.503 81.262 81.759 3.6222 86 48 2 0 0 0 0.82752 1 18424 18424 12.532 0 1 176590 57560 10009 36297 36315 66077 66077 0.02891411740165495 YRHQHLLF 8 Unmodified _YRHQHLLF_ 0 0 0 L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|52|1|anti-sense L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|52|1|anti-sense L1MB8_dup11655|chr12:38698020-38699175:-|1.277877646282275|0.1123828673239765|3.51|129.0|52|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.30126953125 2 557.30125 1112.58795 NaN NaN NaN NaN NaN NaN NaN 85.27 1 85.27 84.77 85.77 0 0 0 0 0.40581 1 20334 20334 2.8892 0 1 57561 10916 36298 36316 66078 66078 0.03615691011168565 YRHQPHLVR 9 Unmodified _YRHQPHLVR_ 0 0 0 ENST00000557431.5_1_14:78227018-78227249:+|nuORF ENST00000557431.5_1_14:78227018-78227249:+|nuORF ENST00000557431.5_1_14:78227018-78227249:+|nuORF MSMS UPN48_class_I_Rep_3 7 603.3352661132812 2 603.336156 1204.65776 NaN NaN NaN NaN NaN NaN NaN 38.873 1 42.528 42.028 43.028 3.6557 0 0 0 0.4007 1 6731 6731 0.52476 0 1 57562 7439 36299 36317 66079 66079 0.0636156967975694 YRHRCQQLC 9 Unmodified _YRHRCQQLC_ 0 0 0 LTR9_dup162|chr4:26346101-26346680:-|1.072253706606002|0.0198604800011214|5.75|151.0|15|3|sense LTR9_dup162|chr4:26346101-26346680:-|1.072253706606002|0.0198604800011214|5.75|151.0|15|3|sense LTR9_dup162|chr4:26346101-26346680:-|1.072253706606002|0.0198604800011214|5.75|151.0|15|3|sense MSMS UPN48_class_I_Rep_1 5 603.78564453125 2 603.784584 1205.55462 NaN NaN NaN NaN NaN NaN NaN 28.095 1 31.652 31.152 32.152 3.5571 0 0 0 0.39518 1 3712 3712 1.8442 0.36234 1 57563 15728 36300 36318 66080 66080 -0.039940020946914956 YRIFAFDHDL 10 Unmodified _YRIFAFDHDL_ 0 0 0 ENSG00000137842|ENST00000260403|TMEM62 ENSG00000137842|ENST00000260403|TMEM62 ENSG00000137842|ENST00000260403|TMEM62 MSMS UPN48_class_I_Rep_2 6 432.8851013183594 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 99.473 1 103.23 102.73 103.73 3.7575 0 0 0 0.53105 1 23620 23620 0.69767 0 1 57564 3048 36301 36319 66081 66081 -0.006117980909721155 YRIHKFIC 8 Unmodified _YRIHKFIC_ 0 0 0 REV__L1ME3C|chr1:85851072-85852814:-|1.0562698013741136|0.0103649358455937|6.67|149.0|111|3|anti-sense REV__L1ME3C|chr1:85851072-85852814:-|1.0562698013741136|0.0103649358455937|6.67|149.0|111|3|anti-sense MSMS UPN48_class_I_Rep_2 6 540.029296875 2 540.294579 1078.57461 NaN NaN NaN NaN NaN NaN NaN 44.336 1 48.097 47.597 48.597 3.7617 0 0 0 0.40625 1 8439 8439 2.3027 0 1 + 57565 28100 36302 36320 66082 66082 0.03846116907584474 YRIHLYFST 9 Unmodified _YRIHLYFST_ 0 0 0 REV__L1PREC2_dup4008|chr9:21875524-21878520:-|1.2690624199106|0.0365586973034983|5.12|151.0|168|2|anti-sense REV__L1PREC2_dup4008|chr9:21875524-21878520:-|1.2690624199106|0.0365586973034983|5.12|151.0|168|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 600.3129272460938 2 600.314023 1198.61349 0.52335 0.00031418 -1.3488 -0.00080969 -0.82542 -0.00049551 600.3124604544464 65.28 0.06678 65.28 65.246 65.312 0 10 7 2 0 0 0 0.48846 1 14749 14749 1.8442 0 1 90473 + 57566 30706 36303 36321 66083 66083 0.022131207429310962 YRIIARVE 8 Unmodified _YRIIARVE_ 0 0 0 REV__MLT1K_dup15237|chr17:67887607-67887860:-|2.335299209552067|0.0292772684797181|6.32|151.0|15|2|anti-sense REV__MLT1K_dup15237|chr17:67887607-67887860:-|2.335299209552067|0.0292772684797181|6.32|151.0|15|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 510.30267333984375 2 510.303458 1018.59236 0.28484 0.00014536 -0.079857 -4.0751E-05 0.20499 0.0001046 510.3032776165533 107.81 0.22929 111.5 111.43 111.66 3.6813 61 23 5 0 0 0 0.82752 1 25439 25439 12.532 0 1 78684000 + 57567 31789 36304 36322 66084 66084 0.08381155434085485 YRILHLKC 8 Unmodified _YRILHLKC_ 0 0 0 chr19:2224121-2225388|47|12.55|0.74|4.09|+|2|TE_info:L1MB7,L1MB7_dup21028,L1,LINE,donor,-,2223817,2224121|None,DOT1L|3 chr19:2224121-2225388|47|12.55|0.74|4.09|+|2|TE_info:L1MB7,L1MB7_dup21028,L1,LINE,donor,-,2223817,2224121|None,DOT1L|3 chr19:2224121-2225388|47|12.55|0.74|4.09|+|2|TE_info:L1MB7,L1MB7_dup21028,L1,LINE,donor,-,2223817,2224121|None,DOT1L|3 MSMS UPN48_class_I_Rep_2 6 523.677978515625 2 523.302404 1044.59026 NaN NaN NaN NaN NaN NaN NaN 76.625 1 80.236 79.736 80.736 3.6116 0 0 0 0.40625 1 18096 18096 2.3027 0 1 57568 595 36305 36323 66085 66085 0.06974403424624143 YRILKMYT 8 Unmodified _YRILKMYT_ 0 0 0 Charlie1a_dup4847|chr15:65735404-65735808:+|1.0473300568878885|0.018733538707776|5.8|151.0|20|2|anti-sense Charlie1a_dup4847|chr15:65735404-65735808:+|1.0473300568878885|0.018733538707776|5.8|151.0|20|2|anti-sense Charlie1a_dup4847|chr15:65735404-65735808:+|1.0473300568878885|0.018733538707776|5.8|151.0|20|2|anti-sense MSMS UPN48_class_I_Rep_3 7 544.3036499023438 2 544.30207 1086.58959 NaN NaN NaN NaN NaN NaN NaN 64.94 1 68.448 67.948 68.948 3.5077 0 0 0 0.40625 1 14637 14637 2.3027 0 1 57569 483 36306 36324 66086 66086 0.04975563984908149 YRILLKLSS 9 Unmodified _YRILLKLSS_ 0 0 0 REV__L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|21|2|sense REV__L1MC4a_dup2337|chr3:197062429-197063928:-|2.5319415218075534|0.2006962569653045|3.66|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.8402709960938 2 546.842416 1091.67028 0.46242 0.00025287 0.16478 9.0111E-05 0.62721 0.00034298 547.3447799817841 94.078 0.17511 97.97 97.873 98.048 3.8914 42 24 2 0 0 0 0.48846 1 22317 22317 1.8442 0 1 211260 + 57570 26978 36307 36325 66087 66087 0.12811168299458586 YRKEPDTTY 9 Unmodified _YRKEPDTTY_ 0 0 0 REV__ENSG00000122194|ENST00000308192|PLG REV__ENSG00000122194|ENST00000308192|PLG MSMS UPN48_class_I_Rep_1 5 586.7844848632812 2 586.782753 1171.55095 NaN NaN NaN NaN NaN NaN NaN 28.126 1 31.683 31.183 32.183 3.5571 0 0 0 0.39428 1 3721 3721 2.0598 0.40713 1 + 57571 18743 36308 36326 66088 66088 -0.0279607011589178 YRKISSNLGNI 11 Unmodified _YRKISSNLGNI_ 0 0 0 REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|75|2|sense REV__L1M1_dup2298|chr4:67599941-67604469:-|1.4923332476704787|0.2149399996197166|2.8|151.0|75|2|sense MSMS UPN48_class_I_Rep_3 7 632.854736328125 2 632.854044 1263.69353 NaN NaN NaN NaN NaN NaN NaN 70.847 1 74.365 73.865 74.865 3.5185 0 0 0 0.38417 1 16414 16414 1.1933 0 1 + 57572 24042 36309 36327 66089 66089 0.07223562346143808 YRKKMLSKI 9 Unmodified _YRKKMLSKI_ 0 0 0 Tigger1_dup1216|chr2:62832458-62834701:+|1.11316707604896|0.2973869179459746|1.9|151.0|37|2|sense Tigger1_dup1216|chr2:62832458-62834701:+|1.11316707604896|0.2973869179459746|1.9|151.0|37|2|sense Tigger1_dup1216|chr2:62832458-62834701:+|1.11316707604896|0.2973869179459746|1.9|151.0|37|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.8259887695312 2 583.857544 1165.70053 0.52413 0.00030602 1.6115 0.00094088 2.1356 0.0012469 583.8583571664067 93.145 0.049644 93.145 93.1 93.15 0 7 4 2 0 0 0 0.5015 1 22556 22556 0.45834 0 1 114420 57573 33032 36310 36328 66090 66090 0.12431203693017778 YRKKNLFE 8 Unmodified _YRKKNLFE_ 0 0 0 L1MC5_dup1013|chr2:26379708-26381015:-|2.0739121326654084|0.1563787198878591|3.73|150.0|33|3|sense L1MC5_dup1013|chr2:26379708-26381015:-|2.0739121326654084|0.1563787198878591|3.73|150.0|33|3|sense L1MC5_dup1013|chr2:26379708-26381015:-|2.0739121326654084|0.1563787198878591|3.73|150.0|33|3|sense MSMS UPN47_class_I_Rep_1 2 549.2815551757812 2 549.308741 1096.60293 NaN NaN NaN NaN NaN NaN NaN 28.877 1 32.635 32.135 33.135 3.7578 0 0 0 0.40753 1 4509 4509 0.6015 0 1 57574 11648 36311 36329 66091 66091 0.058491380885243416 YRKKRIIREYY 11 Unmodified _YRKKRIIREYY_ 0 0 0 L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|19|3|sense L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|19|3|sense L1ME1_dup19286|chr10:27520125-27520635:-|1.068982143843286|0.0485174687611996|4.46|151.0|19|3|sense MSMS UPN48_class_I_Rep_1 5 530.3138427734375 3 529.975453 1586.90453 NaN NaN NaN NaN NaN NaN NaN 28.839 1 32.389 31.889 32.889 3.5499 0 0 0 0.38417 1 3920 3920 0.08335 0.08335 1 57575 12281 36312 36330 66092 66092 0.13455439388030754 YRKKRLPA 8 Unmodified _YRKKRLPA_ 0 0 0 REV__OldhAT1_dup3596|chr15:49894432-49894504:+|1.32033630038344|0.0098528073572152|7.07|150.0|2|2|sense REV__OldhAT1_dup3596|chr15:49894432-49894504:+|1.32033630038344|0.0098528073572152|7.07|150.0|2|2|sense MSMS UPN46_class_I_Rep_3 1 516.3139038085938 2 516.327268 1030.63998 NaN NaN NaN NaN NaN NaN NaN 97.281 1 97.281 96.781 97.781 0 0 0 0 0.40798 1 23665 23665 0 0 1 + 57576 32144 36313 36331 66093 66093 0.125888544249392 YRKKRNNK 8 Unmodified _YRKKRNNK_ 0 0 0 L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|91|3|anti-sense L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|91|3|anti-sense L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|91|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 554.3320922851562 2 553.830706 1105.64686 0.51525 0.00028536 -1.1339 -0.00062799 -0.61865 -0.00034263 553.8297959014656 82.256 0.38303 85.832 85.745 86.128 3.5753 60 46 2 0 0 0 0.82752 2 19650 19650;19681 2.3027 0 1 158050 57577 10515 36314 36332 66094;66095 66094 0.09826167305504896 YRKKRNNK 8 Unmodified _YRKKRNNK_ 0 0 0 L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|91|3|anti-sense L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|91|3|anti-sense L1MB4_dup3816|chr8:47454909-47456104:+|2.6646722346564484|0.0253591409001209|6.72|151.0|91|3|anti-sense MSMS UPN48_class_I_Rep_3 7 553.8303833007812 2 553.830706 1105.64686 NaN NaN NaN NaN NaN NaN NaN 81.263 1 84.948 84.448 85.448 3.685 0 0 0 0.40625 1 19238 19238 2.3027 0 1 57578 10515 36314 36332 66096 66096 0.09826167305504896 YRKNIKKKK 9 Unmodified _YRKNIKKKK_ 0 0 0 REV__L1MEd_dup11652|chr9:461842-462535:-|3.723418198863668|0.4032427820889572|3.21|151.0|18|2|sense REV__L1MEd_dup11652|chr9:461842-462535:-|3.723418198863668|0.4032427820889572|3.21|151.0|18|2|sense MSMS UPN47_class_I_Rep_1 2 603.395263671875 2 603.395682 1204.77681 NaN NaN NaN NaN NaN NaN NaN 87.577 1 91.214 90.714 91.714 3.6372 0 0 0 0.4029 1 21886 21886 0 0 1 + 57579 28505 36315 36333 66097 66097 0.18261343584617862 YRKPKPYTL 9 Unmodified _YRKPKPYTL_ 0 0 0 REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|15|1|sense REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 583.2774047851562 2 583.340041 1164.66553 NaN NaN NaN NaN NaN NaN NaN 82.029 1 85.698 85.198 86.198 3.669 0 0 0 0.39518 1 19480 19480 1.8442 0 1 + 57580 25509 36316 36334 66098 66098 0.0897828415670574 YRKPKPYTL 9 Unmodified _YRKPKPYTL_ 0 0 0 REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|15|1|sense REV__L1MA7_dup3305|chr7:107216009-107219941:+|2.613686109425644|0.1875244653073065|3.8|151.0|15|1|sense MSMS UPN48_class_I_Rep_2 6 583.3412475585938 2 583.340041 1164.66553 NaN NaN NaN NaN NaN NaN NaN 82.311 1 85.98 85.48 86.48 3.669 0 0 0 0.39518 1 19551 19551 1.8442 0 1 + 57581 25509 36316 36334 66099 66099 0.0897828415670574 YRKREYEY 8 Unmodified _YRKREYEY_ 0 0 0 REV__ENSG00000135976|ENST00000420699|ANKRD36 REV__ENSG00000135976|ENST00000420699|ANKRD36 MULTI-MSMS UPN46_class_I_Rep_3 1 603.798583984375 2 603.798737 1205.58292 0.078163 4.7195E-05 -1.0486 -0.00063316 -0.97047 -0.00058597 603.7981872892625 18.357 0.14952 18.357 18.252 18.402 0 23 17 2 0 0 0 0.82752 1 1594 1594 0.69038 0.088878 1 33751 + 57582 19166 36317 36335 66100 66100 -0.011646576420844212 YRKRIKIMWKI 11 Unmodified _YRKRIKIMWKI_ 0 0 0 REV__ENSG00000065600|ENST00000261455|PACC1 REV__ENSG00000065600|ENST00000261455|PACC1 MULTI-SECPEP UPN48_class_I_Rep_2 6 511.650146484375 3 512.318274 1533.93299 0.32469 0.00016634 0.67064 0.00034358 0.99532 0.00050992 512.3187008879826 107.09 0.1501 110.77 110.73 110.88 3.6783 34 20 2 0 0 0 22.551 1 25315 25315 0.50596 0.41111 1 480500 + 57583 17756 36318 36336 66101 66101 0.18738465763590284 YRKVEKRKT 9 Unmodified _YRKVEKRKT_ 0 0 0 REV__ENSG00000188786|ENST00000373036|MTF1 REV__ENSG00000188786|ENST00000373036|MTF1 MSMS UPN46_class_I_Rep_3 1 403.2466735839844 3 403.247173 1206.71969 NaN NaN NaN NaN NaN NaN NaN 101.18 1 101.18 100.68 101.68 0 0 0 0 0.4007 1 24684 24684 0.23584 0 1 + 57584 20985 36319 36337 66102 66102 0.12459876308253115 YRKVEKRKT 9 Unmodified _YRKVEKRKT_ 0 0 0 REV__ENSG00000188786|ENST00000373036|MTF1 REV__ENSG00000188786|ENST00000373036|MTF1 MULTI-MSMS UPN47_class_I_Rep_3 4 403.246826171875 3 403.247173 1206.71969 -0.61137 -0.00024653 -0.1594 -6.4276E-05 -0.77077 -0.00031081 403.24701641923775 96.996 0.46313 100.41 100.36 100.82 3.414 104 63 2 0 0 0 0.49026 1 24137 24137 0.86438 0 1 173380 + 57585 20985 36319 36337 66103 66103 0.12459876308253115 YRKVLFMH 8 Unmodified _YRKVLFMH_ 0 0 0 L1MD2_dup4508|chr7:128564877-128565288:-|1.3560743120974033|0.0037393181188888|8.5|150.0|29|3|anti-sense L1MD2_dup4508|chr7:128564877-128565288:-|1.3560743120974033|0.0037393181188888|8.5|150.0|29|3|anti-sense L1MD2_dup4508|chr7:128564877-128565288:-|1.3560743120974033|0.0037393181188888|8.5|150.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 547.3016357421875 2 547.302404 1092.59026 NaN NaN NaN NaN NaN NaN NaN 24.452 1 28.092 27.592 28.592 3.6397 0 0 0 0.40738 1 2840 2840 0.79363 0 1 57586 12002 36320 36338 66104 66104 0.04766403424628152 YRLADRYSGFL 11 Unmodified _YRLADRYSGFL_ 0 0 0 REV__nc|ENSG00000213047|Q6P3S1-4|DENND1B REV__nc|ENSG00000213047|Q6P3S1-4|DENND1B MULTI-MSMS UPN48_class_I_Rep_3 7 454.23828125 3 454.238455 1359.69353 0.095375 4.3323E-05 -0.27075 -0.00012298 -0.17537 -7.9662E-05 454.23827916206386 46.789 0.78762 50.425 50.04 50.828 3.6363 107 48 3 0 0 0 0.64331 1 9082 9082 3.8459 0.77364 1 327830 + 57587 21239 36321 36339 66105 66105 0.02807562346129089 YRLESPIIL 9 Unmodified _YRLESPIIL_ 0 0 0 REV__nc|ENSG00000014138|Q14181-2|POLA2 REV__nc|ENSG00000014138|Q14181-2|POLA2 MULTI-MSMS UPN48_class_I_Rep_2 6 552.3270263671875 2 552.326599 1102.63865 0.4872 0.00026909 0.061007 3.3696E-05 0.54821 0.00030279 552.3265313074568 69.983 1.0726 73.504 73.147 74.22 3.5216 263 99 4 0 0 0 0.1249 5 16392 16158;16194;16345;16379;16392 29.082 0 1 1776600 + 57588 17592 36322 36340 66106;66107;66108;66109;66110 66110 0.09143175545546 YRLESPIIL 9 Unmodified _YRLESPIIL_ 0 0 0 REV__nc|ENSG00000014138|Q14181-2|POLA2 REV__nc|ENSG00000014138|Q14181-2|POLA2 MULTI-MSMS UPN48_class_I_Rep_3 7 552.3268432617188 2 552.326599 1102.63865 0.4479 0.00024738 0.04614 2.5484E-05 0.49404 0.00027287 552.3265425024151 70.072 0.82777 73.585 73.072 73.9 3.5128 225 68 4 0 0 0 0.17897 3 16253 16051;16058;16253 22.736 0 1 1922400 + 57589 17592 36322 36340 66111;66112;66113 66113 0.09143175545546 YRLESPIIL 9 Unmodified _YRLESPIIL_ 0 0 0 REV__nc|ENSG00000014138|Q14181-2|POLA2 REV__nc|ENSG00000014138|Q14181-2|POLA2 MULTI-MSMS UPN48_class_I_Rep_3 7 552.3265991210938 2 552.326599 1102.63865 0.44692 0.00024685 0.033752 1.8642E-05 0.48068 0.00026549 552.3264236540082 70.426 0.44083 73.945 73.859 74.3 3.5185 80 46 4 0 0 0 0.32682 3 16288 16288;16325;16361 12.241 0 1 498780 + 57590 17592 36322 36340 66114;66115;66116 66114 0.09143175545546 YRLGFDRFE 9 Unmodified _YRLGFDRFE_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MSMS UPN48_class_I_Rep_1 5 601.8012084960938 2 601.80128 1201.58801 NaN NaN NaN NaN NaN NaN NaN 43.027 1 46.537 46.037 47.037 3.5103 0 0 0 0.37692 1 8029 8029 6.2058 0.9089 1 + 57591 18019 36323 36341 66117 66117 -0.004723537794689037 YRLGFDRFE 9 Unmodified _YRLGFDRFE_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MSMS UPN48_class_I_Rep_2 6 601.8015747070312 2 601.80128 1201.58801 0.41814 0.00025164 -0.22034 -0.0001326 0.1978 0.00011904 601.8011138032874 42.598 0.59662 46.356 46.163 46.759 3.7579 76 52 2 0 0 0 0.36392 2 7950 7950;7997 10.074 1.9184 1 161330 + 57592 18019 36323 36341 66118;66119 66118 -0.004723537794689037 YRLGFDRFE 9 Unmodified _YRLGFDRFE_ 0 0 0 REV__ENSG00000091262|ENST00000205557|ABCC6 REV__ENSG00000091262|ENST00000205557|ABCC6 MULTI-MSMS UPN48_class_I_Rep_3 7 601.8023071289062 2 601.80128 1201.58801 0.45608 0.00027447 -0.12823 -7.7168E-05 0.32785 0.0001973 601.8012203361426 42.794 0.53013 46.436 46.222 46.753 3.6415 50 41 2 0 0 0 0.37599 2 7936 7888;7936 9.3831 0 1 129590 + 57593 18019 36323 36341 66120;66121 66121 -0.004723537794689037 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 509.3265686035156 2 509.326402 1016.63825 0.2347 0.00011954 0.091068 4.6383E-05 0.32577 0.00016592 509.3262998290753 75.034 0.25774 78.428 78.214 78.472 3.3937 54 22 3 0 0 0 0.33654 2 18450 18450;18488 11.64 0 1 504930 + 57594 19615 36324 36342 66122;66123 66122 0.13059800616304074 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 509.326171875 2 509.326402 1016.63825 0.23748 0.00012096 0.15635 7.9634E-05 0.39383 0.00020059 509.82798767520524 75.276 0.3729 78.679 78.482 78.855 3.4034 61 32 3 0 0 0 0.33654 1 18528 18528 11.64 0 1 252780 + 57595 19615 36324 36342 66124 66124 0.13059800616304074 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MSMS UPN47_class_I_Rep_2 3 509.3269348144531 2 509.326402 1016.63825 NaN NaN NaN NaN NaN NaN NaN 75.169 1 78.482 77.982 78.982 3.3127 0 0 0 0.28335 1 18549 18549 11.64 0 1 + 57596 19615 36324 36342 66125 66125 0.13059800616304074 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MSMS UPN47_class_I_Rep_2 3 509.3264465332031 2 509.326402 1016.63825 NaN NaN NaN NaN NaN NaN NaN 75.303 1 78.616 78.116 79.116 3.3127 0 0 0 0.28335 1 18587 18587 11.64 0 1 + 57597 19615 36324 36342 66126 66126 0.13059800616304074 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MSMS UPN47_class_I_Rep_2 3 509.3263244628906 2 509.326402 1016.63825 NaN NaN NaN NaN NaN NaN NaN 75.688 1 79.01 78.51 79.51 3.3216 0 0 0 0.36505 1 18701 18701 7.2892 0 1 + 57598 19615 36324 36342 66127 66127 0.13059800616304074 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 509.326402 1016.63825 0.23748 0.00012096 0.15635 7.9634E-05 0.39383 0.00020059 509.82798767520524 75.276 0.3729 78.679 78.482 78.855 3.4034 0.17899 -0.00041686 NaN 11.64 61 32 3 NaN NaN NaN NaN 0 NaN NaN 0 252780 + 57599 19615 36324 36342 0.13059800616304074 YRLGLLVLA 9 Unmodified _YRLGLLVLA_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 509.326402 1016.63825 0.27616 0.00014066 0.73016 0.00037189 1.0063 0.00051255 509.3266236356559 75.075 1.4265 78.322 77.729 79.155 3.2464 -0.17899 0.00016765 NaN 11.64 288 141 3 NaN NaN NaN NaN 0 NaN NaN 0 317840 + 57600 19615 36324 36342 0.13059800616304074 YRLIKFILILA 11 Unmodified _YRLIKFILILA_ 0 0 0 REV__MER96B_dup1333|chr12:11828814-11828985:-|2.319959999923858|0.1618773900169844|3.84|151.0|9|1|anti-sense REV__MER96B_dup1333|chr12:11828814-11828985:-|2.319959999923858|0.1618773900169844|3.84|151.0|9|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 455.3021545410156 3 454.967236 1361.87988 0.039304 1.7882E-05 0.79542 0.00036189 0.83473 0.00037977 455.30199826637687 42.62 1.0677 46.128 45.512 46.58 3.5079 121 92 2 0 0 0 0.68478 1 7968 7968 0.094841 0 1 346820 + 57601 31578 36325 36343 66128 66128 0.21341411252615217 YRLIKFILILA 11 Unmodified _YRLIKFILILA_ 0 0 0 REV__MER96B_dup1333|chr12:11828814-11828985:-|2.319959999923858|0.1618773900169844|3.84|151.0|9|1|anti-sense REV__MER96B_dup1333|chr12:11828814-11828985:-|2.319959999923858|0.1618773900169844|3.84|151.0|9|1|anti-sense MSMS UPN48_class_I_Rep_2 6 454.9671630859375 3 454.967236 1361.87988 NaN NaN NaN NaN NaN NaN NaN 41.86 1 45.611 45.111 46.111 3.7508 0 0 0 0.38417 1 7686 7686 0.50596 0.34663 1 + 57602 31578 36325 36343 66129 66129 0.21341411252615217 YRLIKKHKK 9 Unmodified _YRLIKKHKK_ 0 0 0 REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|48|2|sense REV__L1MCb_dup1309|chr9:90823170-90825490:+|7.461082257038055|0.0113954096208922|9.35|151.0|48|2|sense MSMS UPN48_class_I_Rep_3 7 405.27349853515625 3 405.267909 1212.7819 NaN NaN NaN NaN NaN NaN NaN 75.061 1 78.626 78.126 79.126 3.5659 0 0 0 0.39887 1 17611 17611 0.96228 0.33545 1 + 57603 27231 36326 36344 66130 66130 0.18401647447240066 YRLIKQPRR 9 Unmodified _YRLIKQPRR_ 0 0 0 ENSG00000131386|ENST00000339732|GALNT15 ENSG00000131386|ENST00000339732|GALNT15 ENSG00000131386|ENST00000339732|GALNT15 MSMS UPN46_class_I_Rep_3 1 615.3950805664062 2 615.383106 1228.75166 NaN NaN NaN NaN NaN NaN NaN 100.46 1 100.46 99.96 100.96 0 0 0 0 0.4007 1 24487 24487 0.52476 0 1 57604 2709 36327 36345 66131 66131 0.14643288782053787 YRLIRCRL 8 Unmodified _YRLIRCRL_ 0 0 0 L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|102|2|anti-sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|102|2|anti-sense L1M1_dup468|chr1:174489858-174492165:-|4.159754522598057|0.180836836726766|4.52|151.0|102|2|anti-sense MSMS UPN48_class_I_Rep_2 6 546.7509155273438 2 546.826578 1091.6386 NaN NaN NaN NaN NaN NaN NaN 113.17 1 116.84 116.34 117.34 3.6648 0 0 0 0.40746 1 26997 26997 0.69038 0 1 57605 8582 36328 36346 66132 66132 0.09644897064526958 YRLIRQLW 8 Unmodified _YRLIRQLW_ 0 0 0 REV__L1ME3G_dup10034|chr10:26539516-26540292:+|3.2492186771384923|0.0220283136954491|7.2|151.0|39|1|anti-sense REV__L1ME3G_dup10034|chr10:26539516-26540292:+|3.2492186771384923|0.0220283136954491|7.2|151.0|39|1|anti-sense MSMS UPN48_class_I_Rep_2 6 574.338623046875 2 574.340375 1146.6662 NaN NaN NaN NaN NaN NaN NaN 96.791 1 100.57 100.07 101.07 3.7804 0 0 0 0.40746 1 22997 22997 0.69038 0 1 + 57606 28181 36329 36347 66133 66133 0.0987312359641237 YRLKEHYL 8 Unmodified _YRLKEHYL_ 0 0 0 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 MSMS UPN48_class_I_Rep_1 5 561.3086547851562 2 561.308741 1120.60293 NaN NaN NaN NaN NaN NaN NaN 44.451 1 47.965 47.465 48.465 3.5132 0 0 0 0.40604 1 8463 8463 2.5775 0 1 57607 3420 36330 36348 66134 66134 0.0474513808849224 YRLKFKQP 8 Unmodified _YRLKFKQP_ 0 0 0 REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|2|1|sense REV__L1MA3_dup6485|chr11:77561612-77564668:-|1.7637274126722595|0.4041342331854479|2.13|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 540.3214111328125 2 540.321651 1078.62875 0.33651 0.00018183 0.047291 2.5553E-05 0.38381 0.00020738 540.321526082623 44.729 0.047691 44.729 44.7 44.747 0 8 2 4 0 0 0 0.82752 1 9037 9037 0.69038 0 1 1727500 + 57608 25079 36331 36349 66135 66135 0.09258032330808419 YRLLAPSR 8 Unmodified _YRLLAPSR_ 0 0 0 nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10 nc|ENSG00000155363|Q9HCE1-2|MOV10 nc|ENSG00000155363|Q9HCE1-2|MOV10 MSMS UPN46_class_I_Rep_3 1 488.2900390625 2 488.290351 974.566149 NaN NaN NaN NaN NaN NaN NaN 109.8 1 109.8 109.3 110.3 0 0 0 0 0.4044 1 27004 27004 4.756 0 1 57609 3701 36332 36350 66136 66136 0.0778488626260696 YRLLFGSYE 9 Unmodified _YRLLFGSYE_ 0 0 0 L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|235|3|anti-sense L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|235|3|anti-sense L1PA7_dup11955|chr16:47099160-47103451:+|2.34438285304856|0.0759257737757676|4.95|150.0|235|3|anti-sense MSMS UPN47_class_I_Rep_1 2 574.29052734375 2 574.292756 1146.57096 NaN NaN NaN NaN NaN NaN NaN 93.622 1 97.358 96.858 97.858 3.736 0 0 0 0.38478 1 23282 23282 4.3292 0 1 57610 14742 36333 36351 66137 66137 0.003537256147183143 YRLLGRMF 8 Unmodified _YRLLGRMF_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MSMS UPN47_class_I_Rep_2 3 528.2943115234375 2 528.294579 1054.57461 NaN NaN NaN NaN NaN NaN NaN 32.077 1 35.547 35.047 36.047 3.4691 0 0 0 0.40625 1 5512 5512 2.3027 0.24298 1 57611 4209 36334 36352 66138 66138 0.04950116907593838 YRLLPDQNKIW 11 Unmodified _YRLLPDQNKIW_ 0 0 0 REV__L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|77|2|sense REV__L1PA11_dup476|chr2:148715333-148720938:-|2.460675878280772|0.0482388118039619|5.67|151.0|77|2|sense MSMS UPN47_class_I_Rep_2 3 482.7309265136719 3 482.601504 1444.78268 NaN NaN NaN NaN NaN NaN NaN 32.272 1 35.727 35.227 36.227 3.4547 0 0 0 0.38417 1 5569 5569 1.3296 0 1 + 57612 29039 36335 36353 66139 66139 0.07808397305643666 YRLMLFVF 8 Unmodified _YRLMLFVF_ 0 0 0 REV__L1MB7_dup16113|chr12:110303884-110304866:-|1.9802989954438277|0.0338798877259019|5.87|151.0|56|2|anti-sense REV__L1MB7_dup16113|chr12:110303884-110304866:-|1.9802989954438277|0.0338798877259019|5.87|151.0|56|2|anti-sense MSMS UPN47_class_I_Rep_2 3 544.8016967773438 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 13.675 1 17.063 16.563 17.563 3.388 0 0 0 0.40798 1 384 384 0 0 1 + 57613 26157 36336 36354 66140 66140 0.0485676933585637 YRLNKITKG 9 Unmodified _YRLNKITKG_ 0 0 0 ENST00000342992.10_3_2:179453989-179454046:-|nuORF ENST00000342992.10_3_2:179453989-179454046:-|nuORF ENST00000342992.10_3_2:179453989-179454046:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 546.7694702148438 2 546.82984 1091.64513 0.38167 0.00020871 -0.34346 -0.00018782 0.03821 2.0895E-05 546.8296180930956 45.894 0.86408 49.531 49.127 49.991 3.6369 89 61 2 0 0 0 0.46869 1 8775 8775 3.9444 0 1 163750 57614 6243 36337 36355 66141 66141 0.10297113496858401 YRLSLLSL 8 Unmodified _YRLSLLSL_ 0 0 0 L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|489|3|anti-sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|489|3|anti-sense L1PB3_dup1397|chr7:15279541-15287230:+|1.829502890816868|0.0490474207213378|5.22|143.0|489|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 482.795654296875 2 482.794935 963.575317 0.061656 2.9767E-05 1.3612 0.00065717 1.4228 0.00068693 482.79551118030906 32.206 0.10121 32.206 32.118 32.219 0 12 7 2 0 0 0 0.82752 1 5484 5484 2.3027 0 1 113130 57615 15249 36338 36356 66142 66142 0.09207234828284072 YRLVILKLL 9 Unmodified _YRLVILKLL_ 0 0 0 L1MC3_dup9537|chr12:112495933-112496762:-|1.556507307890754|0.1145717985283733|3.76|151.0|1|1|sense L1MC3_dup9537|chr12:112495933-112496762:-|1.556507307890754|0.1145717985283733|3.76|151.0|1|1|sense L1MC3_dup9537|chr12:112495933-112496762:-|1.556507307890754|0.1145717985283733|3.76|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 566.2806396484375 2 565.886627 1129.7587 NaN NaN NaN NaN NaN NaN NaN 27.303 1 30.645 30.145 31.145 3.3422 0 0 0 0.4007 1 4126 4126 0.52476 0 1 57616 11388 36339 36357 66143 66143 0.19901208609917376 YRLVVLALA 9 Unmodified _YRLVVLALA_ 0 0 0 ENST00000507507.1_1_10:63170082-63173364:-|nuORF;ENSG00000196932|ENST00000399298|TMEM26 ENST00000507507.1_1_10:63170082-63173364:-|nuORF ENST00000507507.1_1_10:63170082-63173364:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 509.8034362792969 2 509.326402 1016.63825 0.16228 8.2652E-05 0.038167 1.944E-05 0.20044 0.00010209 509.3263089153212 75.946 0.39547 79.267 79.095 79.49 3.3216 62 39 2 0 0 0 0.12281 1 18748 18748 4.3292 0 1 79248 57617 5337 36340 36358 66144 66144 0.13059800616304074 YRMMKKLY 8 Unmodified _YRMMKKLY_ 0 0 0 REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 566.79052734375 2 566.803922 1131.59329 0.34241 0.00019408 -0.69589 -0.00039444 -0.35348 -0.00020036 566.803400657727 66.032 0.34978 69.39 69.208 69.558 3.3576 32 23 2 0 0 0 0.82752 1 15784 15784 9.3474 0 1 57112 + 57618 28728 36341 36359 66145 66145 0.03275910487127476 YRMMKKLY 8 Unmodified _YRMMKKLY_ 0 0 0 REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 567.3043212890625 2 566.803922 1131.59329 0.37238 0.00021107 -1.0224 -0.0005795 -0.65001 -0.00036843 566.8030760485876 66.252 0.4126 69.511 69.36 69.773 3.2588 29 23 2 0 0 0 0.82752 2 15896 15896;15977 9.3474 0 1 60334 + 57619 28728 36341 36359 66146;66147 66146 0.03275910487127476 YRMMKKLY 8 Unmodified _YRMMKKLY_ 0 0 0 REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 567.3043212890625 2 566.803922 1131.59329 0.37238 0.00021107 -1.0224 -0.0005795 -0.65001 -0.00036843 566.8030760485876 66.252 0.4126 69.511 69.36 69.773 3.2588 29 23 2 0 0 0 0.72333 1 15896 15896 9.3474 0 1 60334 + 57620 28728 36341 36359 66148 66148 0.03275910487127476 YRMMKKLY 8 Unmodified _YRMMKKLY_ 0 0 0 REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense REV__L1MEg_dup14200|chr21:39300505-39300783:+|1.2073244193320964|0.0372525509235074|5.02|151.0|10|3|sense MSMS UPN47_class_I_Rep_3 4 566.7920532226562 2 566.803922 1131.59329 NaN NaN NaN NaN NaN NaN NaN 66.371 1 69.557 69.057 70.057 3.1853 0 0 0 0.39624 1 16003 16003 9.3474 0 1 + 57621 28728 36341 36359 66149 66149 0.03275910487127476 YRNELIKTA 9 Unmodified _YRNELIKTA_ 0 0 0 ENST00000577928.5_1_18:19263865-19284533:-|nuORF;ENST00000578270.5_1_18:19244077-19283696:-|nuORF;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF;ENSG00000158201.10,ABHD3,chr18,-,I9.1,21655084,21656860|39|7.7|4|intron;ENSG00000158201.10,ABHD3,chr18,-,I9.1,21655084,21656860|39|7.7|1|intron;ENSG00000158201|ENST00000289119|ABHD3 ENST00000577928.5_1_18:19263865-19284533:-|nuORF ENST00000577928.5_1_18:19263865-19284533:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 554.6866455078125 2 554.31148 1106.60841 0.48898 0.00027105 0.38808 0.00021511 0.87705 0.00048616 554.3113804516447 113.9 0.031219 117.53 117.51 117.54 3.6314 5 3 2 0 0 0 0.48846 1 27675 27675 1.8442 0 1 12488 57622 3792 36342 36360 66150 66150 0.05936816880330298 YRNIIFCS 8 Unmodified _YRNIIFCS_ 0 0 0 nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-SECPEP UPN48_class_I_Rep_1 5 508.2879333496094 2 508.25512 1014.49569 0.21688 0.00011023 0.18742 9.5258E-05 0.4043 0.00020549 508.7567733910633 49.284 0.61841 52.808 52.596 53.214 3.5246 50 42 2 0 0 0 0.72333 1 9914 9914 12.532 0 1 90151 57623 959 36343 36361 66151 66151 -0.010981551173586013 YRNIIFCS 8 Unmodified _YRNIIFCS_ 0 0 0 nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS UPN48_class_I_Rep_3 7 508.2548522949219 2 508.25512 1014.49569 0.1774 9.0162E-05 -0.13388 -6.8046E-05 0.043514 2.2116E-05 508.2550693693328 49.25 0.72324 52.879 52.66 53.383 3.6291 62 49 2 0 0 0 0.82752 2 9928 9872;9928 12.532 0 1 142700 57624 959 36343 36361 66152;66153 66153 -0.010981551173586013 YRNLAFLGED 10 Unmodified _YRNLAFLGED_ 0 0 0 ENST00000593783.1_1_19:24288720-24288900:+|nuORF ENST00000593783.1_1_19:24288720-24288900:+|nuORF ENST00000593783.1_1_19:24288720-24288900:+|nuORF MSMS UPN48_class_I_Rep_2 6 599.30029296875 2 599.29857 1196.58259 NaN NaN NaN NaN NaN NaN NaN 38.715 1 42.445 41.945 42.945 3.7297 0 0 0 0.53105 1 6782 6782 1.4819 0.15237 1 57625 7643 36344 36362 66154 66154 -0.007840773619591346 YRNLTVTY 8 Unmodified _YRNLTVTY_ 0 0 0 L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.2725219726562 2 515.271824 1028.5291 0.24058 0.00012397 -0.021951 -1.1311E-05 0.21863 0.00011265 515.2717396856658 48.924 0.95648 52.448 52.07 53.027 3.5239 200 69 4 0 0 0 0.82752 1 9983 9983 10.824 0 1 1035500 57626 12830 36345 36363 66155 66155 0.01597169926208153 YRNLTVTY 8 Unmodified _YRNLTVTY_ 0 0 0 L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense L1ME3G_dup14610|chr17:30890919-30891386:-|1.1292468630800536|0.0938346040797903|3.59|151.0|20|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 515.7744140625 2 515.271824 1028.5291 0.24539 0.00012644 -0.025821 -1.3305E-05 0.21957 0.00011314 515.27177830905 48.848 1.0208 52.477 52.042 53.063 3.6291 186 77 4 0 0 0 0.82752 1 9876 9876 18.146 1.9972 1 1050900 57627 12830 36345 36363 66156 66156 0.01597169926208153 YRNQRQRQK 9 Unmodified _YRNQRQRQK_ 0 0 0 HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|46|2|sense HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|46|2|sense HERVK9-int_dup630|chr19:52301999-52304816:-|1.213983763968161|0.1612781111153632|2.91|151.0|46|2|sense MSMS UPN48_class_I_Rep_1 5 638.8524169921875 2 638.852701 1275.69085 NaN NaN NaN NaN NaN NaN NaN 112.28 1 115.91 115.41 116.41 3.6321 0 0 0 0.4007 1 27241 27241 0.52476 0 1 57628 8330 36346 36364 66157 66157 0.06403151731842627 YRNSLYYFA 9 Unmodified _YRNSLYYFA_ 0 0 0 L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|2|1|sense;L1MD3_dup1503|chr5:70988371-70988607:+|1.2728585042493652|0.1097612184482281|3.54|148.0|2|1|sense L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|2|1|sense L1MD3_dup1504|chr5:71113257-71113493:+|1.293725037105912|0.1391059053106622|3.22|138.0|2|1|sense MSMS UPN47_class_I_Rep_3 4 598.7896118164062 2 598.790381 1195.56621 NaN NaN NaN NaN NaN NaN NaN 33.96 1 37.235 36.735 37.735 3.2748 0 0 0 0.40038 1 6119 6119 0.6015 0 1 57629 12059 36347 36365 66158 66158 -0.02375158528047905 YRNTKEKL 8 Unmodified _YRNTKEKL_ 0 0 0 REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 526.361572265625 2 526.298373 1050.58219 -0.11603 -6.1066E-05 -4.0271 -0.0021195 -4.1432 -0.0021805 526.7975306254106 31.992 0.036747 35.705 35.681 35.718 3.7131 4 2 2 0 0 0 0.72333 1 5441 5441 2.3027 2.3027 1 24887 + 57630 23332 36348 36366 66159 66159 0.05892547708845086 YRNTKEKL 8 Unmodified _YRNTKEKL_ 0 0 0 REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense REV__HAL1_dup11194|chr8:18012957-18013271:-|1.1636571955414028|0.3712899114634087|1.65|151.0|4|2|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 526.298373 1050.58219 0.39818 0.00020956 -10.989 -0.0057837 -10.591 -0.0055741 526.2914337893427 32.176 0.044155 35.825 35.799 35.844 3.6497 0.060331 -0.006871 NaN 2.3027 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 32177 + 57631 23332 36348 36366 0.05892547708845086 YRNYSKKNY 9 Unmodified _YRNYSKKNY_ 0 0 0 MER2_dup2590|chr4:139174533-139174789:+|2.8927020957001237|0.0091214969968137|8.31|151.0|7|3|sense MER2_dup2590|chr4:139174533-139174789:+|2.8927020957001237|0.0091214969968137|8.31|151.0|7|3|sense MER2_dup2590|chr4:139174533-139174789:+|2.8927020957001237|0.0091214969968137|8.31|151.0|7|3|sense MSMS UPN48_class_I_Rep_3 7 618.31201171875 2 618.312012 1234.60947 NaN NaN NaN NaN NaN NaN NaN 31.237 1 34.938 34.438 35.438 3.7015 0 0 0 0.4007 1 4595 4595 0.52476 0 1 57632 15822 36349 36367 66160 66160 0.0015503124923270661 YRNYYKKLRRK 11 Unmodified _YRNYYKKLRRK_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|117|2|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|117|2|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|117|2|sense MSMS UPN48_class_I_Rep_2 6 529.9778442382812 3 529.979198 1586.91576 NaN NaN NaN NaN NaN NaN NaN 28.627 1 32.258 31.758 32.758 3.6311 0 0 0 0.38417 1 3961 3961 0.094841 0.094841 1 57633 13845 36350 36368 66161 66161 0.14578261482142807 YRPGHYDILY 10 Unmodified _YRPGHYDILY_ 0 0 0 ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1 ENSG00000167770|ENST00000538426|OTUB1 ENSG00000167770|ENST00000538426|OTUB1 MSMS UPN47_class_I_Rep_3 4 432.8847351074219 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 40.922 1 44.159 43.659 44.659 3.2372 0 0 0 0.53105 1 8249 8249 0.77653 0 1 57634 4329 36351 36369 66162 66162 -0.006117980909493781 YRPGTVAL 8 Unmodified _YRPGTVAL_ 0 0 0 ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000273983|ENST00000614378|H3C8;ENSG00000277775|ENST00000618052|H3C7;ENSG00000197409|ENST00000356476|H3C4;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000275379|ENST00000616365|H3C11;ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF ENSG00000132475|ENST00000254810|H3-3B ENSG00000132475|ENST00000254810|H3-3B MULTI-MSMS UPN46_class_I_Rep_3 1 438.75054931640625 2 438.750527 875.486502 0.13765 6.0393E-05 0.11616 5.0967E-05 0.25381 0.00011136 438.7504922858077 42.931 0.57187 42.931 42.71 43.282 0 100 56 2 0 0 0 0.82752 1 8543 8543 25.399 3.6527 1 472520 57635 2758 36352 36370 66163 66163 0.04377819588614784 YRPIYSVLSK 10 Unmodified _YRPIYSVLSK_ 0 0 0 REV__L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|195|1|anti-sense REV__L1PA7_dup4924|chr6:2286245-2292695:+|41.74038905106914|0.2509383892152794|7.38|151.0|195|1|anti-sense MSMS UPN46_class_I_Rep_3 1 613.3519897460938 2 613.350606 1224.68666 NaN NaN NaN NaN NaN NaN NaN 86.142 1 86.142 85.642 86.642 0 0 0 0 0.53105 1 20587 20587 2.9952 0.49676 1 + 57636 30113 36353 36371 66164 66164 0.08330249465552697 YRPLTVLT 8 Unmodified _YRPLTVLT_ 0 0 0 nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENSG00000125247.16,TMTC4,chr13,-,I9.1,100638809,100642210|29|6.55|1|intron;nc|ENSG00000125247|Q5T4D3-2|TMTC4;ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 nc|ENSG00000125247|Q5T4D3|TMTC4 nc|ENSG00000125247|Q5T4D3|TMTC4 MSMS UPN48_class_I_Rep_2 6 481.3373107910156 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 113.37 1 117.03 116.53 117.53 3.663 0 0 0 0.40798 1 27054 27054 0 0 1 57637 2497 36354 36372 66165 66165 0.07734948311201606 YRPPAATK 8 Unmodified _YRPPAATK_ 0 0 0 REV__ENST00000307839.9_1_3:23958190-23958547:+|nuORF REV__ENST00000307839.9_1_3:23958190-23958547:+|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 452.7472229003906 2 452.255977 902.497401 0.12757 5.7694E-05 2.645 0.0011962 2.7726 0.0012539 452.25714964768014 36.58 0.095165 40.282 40.223 40.318 3.7021 16 10 2 0 0 0 0.72333 1 6154 6154 0.6015 0 1 55042 + 57638 21692 36355 36373 66166 66166 0.042252219628949206 YRPQSLLHI 9 Unmodified _YRPQSLLHI_ 0 0 0 Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|67|3|anti-sense Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|67|3|anti-sense Tigger2b_Pri_dup268|chr2:87023901-87024920:-|1.9339858069766125|0.3779320236728362|2.36|150.0|67|3|anti-sense MSMS UPN48_class_I_Rep_2 6 563.8217163085938 2 563.822015 1125.62948 NaN NaN NaN NaN NaN NaN NaN 44.845 1 48.606 48.106 49.106 3.7617 0 0 0 0.37692 1 8594 8594 6.2058 0.47393 1 57639 33346 36356 36374 66167 66167 0.0716882697984147 YRPRKYRA 8 Unmodified _YRPRKYRA_ 0 0 0 REV__L1MB7_dup4802|chr3:143018073-143018720:-|1.287970474949301|0.4378495086129478|1.56|151.0|9|1|sense REV__L1MB7_dup4802|chr3:143018073-143018720:-|1.287970474949301|0.4378495086129478|1.56|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 555.3192138671875 2 555.319974 1108.6254 NaN NaN NaN NaN NaN NaN NaN 93.966 1 97.742 97.242 98.242 3.7761 0 0 0 0.40746 1 22345 22345 0.69038 0 1 + 57640 26273 36357 36375 66168 66168 0.07542782276777871 YRPRYITG 8 Unmodified _YRPRYITG_ 0 0 0 ENST00000476571.1_1_6:124443035-124712010:+|nuORF;nc|ENSG00000188580|Q5VXU1-2|NKAIN2;nc|ENSG00000188580|Q5VXU1-3|NKAIN2;ENSG00000188580|ENST00000368417|NKAIN2 ENST00000476571.1_1_6:124443035-124712010:+|nuORF ENST00000476571.1_1_6:124443035-124712010:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.2808227539062 2 513.279983 1024.54541 NaN NaN NaN NaN NaN NaN NaN 29.02 1 32.512 32.012 33.012 3.4923 0 0 0 0.40746 1 4588 4588 0.69038 0 1 57641 5239 36358 36376 66169 66169 0.03412295882912986 YRPVEQKR 8 Unmodified _YRPVEQKR_ 0 0 0 L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|71|3|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|71|3|sense L1MB1_dup4977|chr14:39409035-39411091:-|4.053378735632496|0.1682483731587983|4.59|151.0|71|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 538.3040771484375 2 538.30399 1074.59343 -0.26473 -0.0001425 0.21009 0.00011309 -0.05464 -2.9413E-05 538.3040756845411 26.154 1.0962 29.502 29.114 30.21 3.3478 163 98 2 0 0 0 0.82752 1 3725 3725 4.756 0.81161 1 155300 57642 10189 36359 36377 66170 66170 0.05911369802970512 YRPVIEPP 8 Unmodified _YRPVIEPP_ 0 0 0 REV__ENSG00000280165|ENST00000409204|PCDH20 REV__ENSG00000280165|ENST00000409204|PCDH20 MSMS UPN48_class_I_Rep_2 6 485.75579833984375 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 19.528 1 23.178 22.678 23.678 3.6497 0 0 0 0.40746 1 1505 1505 0.69038 0 1 + 57643 21447 36360 36378 66171 66171 0.0423837527713431 YRQEVRTVLK 10 Unmodified _YRQEVRTVLK_ 0 0 0 ENST00000500268.6_1_4:10456341-10456455:-|nuORF ENST00000500268.6_1_4:10456341-10456455:-|nuORF ENST00000500268.6_1_4:10456341-10456455:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 646.3771362304688 2 646.377686 1290.74082 0.43786 0.00028302 -0.21719 -0.00014039 0.22067 0.00014264 646.3777788150404 93.831 1.6034 97.452 96.621 98.225 3.6208 270 194 2 0 0 0 0.54822 1 22531 22531 5.7319 0.83484 1 411860 57644 7127 36361 36379 66172 66172 0.10707841617113445 YRQFLKPK 8 Unmodified _YRQFLKPK_ 0 0 0 REV__L1M7_dup2504|chr13:50979177-50980132:+|2.304936368091625|0.0441972227266097|5.7|151.0|20|2|sense REV__L1M7_dup2504|chr13:50979177-50980132:+|2.304936368091625|0.0441972227266097|5.7|151.0|20|2|sense MSMS UPN46_class_I_Rep_3 1 540.3221435546875 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 37.203 1 37.203 36.703 37.703 0 0 0 0 0.40746 1 6971 6971 0.69038 0 1 + 57645 24735 36362 36380 66173 66173 0.09258032330808419 YRQIVYAL 8 Unmodified _YRQIVYAL_ 0 0 0 REV__ENST00000461102.1_1_9:131094341-131094578:+|nuORF REV__ENST00000461102.1_1_9:131094341-131094578:+|nuORF MSMS UPN48_class_I_Rep_1 5 513.2922973632812 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 58.785 1 62.272 61.772 62.772 3.487 0 0 0 0.4044 1 12858 12858 4.756 0 1 + 57646 20208 36363 36381 66174 66174 0.059263506854904335 YRQPLIYF 8 Unmodified _YRQPLIYF_ 0 0 0 L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|32|3|anti-sense L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|32|3|anti-sense L1MB8_dup16241|chr22:24376846-24377314:-|2.298559952189953|0.0422537287159578|5.77|151.0|32|3|anti-sense MSMS UPN46_class_I_Rep_3 1 550.5648803710938 2 550.300384 1098.58622 NaN NaN NaN NaN NaN NaN NaN 57.776 1 57.776 57.276 58.276 0 0 0 0 0.40746 1 12679 12679 0.69038 0 1 57647 10966 36364 36382 66175 66175 0.040866372025675446 YRQRFLILV 9 Unmodified _YRQRFLILV_ 0 0 0 L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|67|3|anti-sense L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|67|3|anti-sense L1MDa_dup2624|chr7:6126778-6127866:-|1.2352817247395322|0.0271416343662207|5.51|151.0|67|3|anti-sense MSMS UPN47_class_I_Rep_3 4 604.3653564453125 2 604.369133 1206.72371 NaN NaN NaN NaN NaN NaN NaN 97.743 1 101.16 100.66 101.66 3.4216 0 0 0 0.40038 1 24219 24219 0.6015 0 1 57648 12108 36365 36383 66176 66176 0.12861965801971564 YRQRVQGGF 9 Unmodified _YRQRVQGGF_ 0 0 0 REV__ENSG00000105550|ENST00000593756|FGF21 REV__ENSG00000105550|ENST00000593756|FGF21 MSMS UPN48_class_I_Rep_3 7 555.79541015625 2 555.793789 1109.57303 NaN NaN NaN NaN NaN NaN NaN 40.209 1 43.86 43.36 44.36 3.6509 0 0 0 0.39326 1 7123 7123 2.3027 0.24298 1 + 57649 18293 36366 36384 66177 66177 0.022621991432060895 YRQYHRNDRF 10 Unmodified _YRQYHRNDRF_ 0 0 0 REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|50|2|sense REV__L1ME2_dup7056|chr9:114022221-114024344:-|1.8784545477206909|0.0672583895316492|4.8|151.0|50|2|sense MSMS UPN47_class_I_Rep_2 3 485.57159423828125 3 485.572719 1453.69633 NaN NaN NaN NaN NaN NaN NaN 36.339 1 39.75 39.25 40.25 3.4114 0 0 0 0.53105 1 6806 6806 0.77653 0.14971 1 + 57650 27880 36367 36385 66178 66178 -0.012371694763714913 YRRDALYY 8 Unmodified _YRRDALYY_ 0 0 0 REV__nc|ENSG00000166938|Q8TF46-3|DIS3L REV__nc|ENSG00000166938|Q8TF46-3|DIS3L MSMS UPN48_class_I_Rep_1 5 560.2822265625 2 560.282723 1118.55089 NaN NaN NaN NaN NaN NaN NaN 44.31 1 47.824 47.324 48.324 3.5132 0 0 0 0.40746 1 8419 8419 0.69038 0 1 + 57651 23056 36368 36386 66179 66179 -0.0036402532525698916 YRRDLQPK 8 Unmodified _YRRDLQPK_ 0 0 0 REV__ENST00000520923.5_1_8:101051146-101092499:-|nuORF REV__ENST00000520923.5_1_8:101051146-101092499:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 538.3038940429688 2 538.30399 1074.59343 -0.071651 -3.857E-05 0.15597 8.3961E-05 0.084321 4.539E-05 538.3040621670987 25.547 1.0206 29.297 29.021 30.041 3.7495 167 91 3 0 0 0 0.82752 1 3545 3545 7.2892 1.5574 1 208950 + 57652 19024 36369 36387 66180 66180 0.05911369802970512 YRRFFVPED 9 Unmodified _YRRFFVPED_ 0 0 0 ENSG00000158315|ENST00000372990|RHBDL2 ENSG00000158315|ENST00000372990|RHBDL2 ENSG00000158315|ENST00000372990|RHBDL2 MULTI-MSMS UPN48_class_I_Rep_1 5 614.80908203125 2 614.809105 1227.60366 0.48406 0.0002976 0.06393 3.9305E-05 0.54799 0.00033691 614.8092196632923 32.252 0.16184 35.778 35.65 35.811 3.5266 18 14 2 0 0 0 0.42249 1 4854 4854 6.7232 0 1 85683 57653 3797 36370 36388 66181 66181 -0.001040672624412764 YRRFPVNK 8 Unmodified _YRRFPVNK_ 0 0 0 L1MC4a_dup9711|chr20:3951257-3952010:-|1.785295753064722|0.0245708788867994|6.18|151.0|30|3|sense L1MC4a_dup9711|chr20:3951257-3952010:-|1.785295753064722|0.0245708788867994|6.18|151.0|30|3|sense L1MC4a_dup9711|chr20:3951257-3952010:-|1.785295753064722|0.0245708788867994|6.18|151.0|30|3|sense MSMS UPN46_class_I_Rep_3 1 540.310302734375 2 540.309075 1078.6036 NaN NaN NaN NaN NaN NaN NaN 74.044 1 74.044 73.544 74.544 0 0 0 0 0.40746 1 17175 17175 0.69038 0 1 57654 11640 36371 36389 66182 66182 0.06743977528230971 YRRFSPLR 8 Unmodified _YRRFSPLR_ 0 0 0 REV__nc|ENSG00000135336|Q9UBD5-3|ORC3 REV__nc|ENSG00000135336|Q9UBD5-3|ORC3 MSMS UPN48_class_I_Rep_3 7 547.789794921875 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 31.97 1 35.671 35.171 36.171 3.7015 0 0 0 0.40625 1 4798 4798 2.3027 0 1 + 57655 19134 36372 36390 66183 66183 0.07143379902504421 YRRHGTIL 8 Unmodified _YRRHGTIL_ 0 0 0 REV__HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|47|1|anti-sense REV__HERVIP10F-int_dup250|chr19:19897815-19899157:+|1.3054931389697446|0.3662567562817747|1.83|151.0|47|1|anti-sense MSMS UPN48_class_I_Rep_2 6 508.2926940917969 2 508.293425 1014.5723 NaN NaN NaN NaN NaN NaN NaN 63.591 1 67.065 66.565 67.565 3.4743 0 0 0 0.3903 1 14310 14310 11.64 1.5664 1 + 57656 23760 36373 36391 66184 66184 0.06559404494146293 YRRHIYSLG 9 Unmodified _YRRHIYSLG_ 0 0 0 REV__CDK14|p.Q249R|1|0.06|ENSG00000058091|chr7:90917644-90917644|A/G|missense_variant REV__CDK14|p.Q249R|1|0.06|ENSG00000058091|chr7:90917644-90917644|A/G|missense_variant MULTI-MSMS UPN47_class_I_Rep_1 2 582.8164672851562 2 582.817264 1163.61998 0.03261 1.9006E-05 -1.0581 -0.00061665 -1.0254 -0.00059765 582.8165463825657 42.947 0.61022 46.634 46.319 46.929 3.6875 84 43 3 0 0 0 0.28552 1 8806 8806 14.838 1.9657 1 116610 + 57657 17263 36374 36392 66185 66185 0.04471058694321073 YRRKDGVFLY 10 Unmodified _YRRKDGVFLY_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS UPN48_class_I_Rep_3 7 439.574951171875 3 439.575178 1315.70371 0.054034 2.3752E-05 -0.25207 -0.0001108 -0.19803 -8.7051E-05 439.5750427030806 37.451 1.2253 41.114 40.644 41.869 3.663 237 126 2 0 0 0 0.5617 1 6258 6258 2.6312 2.6312 1 209620 57658 2511 36375 36393 66186 66186 0.05848170071385539 YRRKIFIT 8 Unmodified _YRRKIFIT_ 0 0 0 L1ME3B_dup3442|chr7:77930815-77931909:+|1.1425339456526389|0.05461085202534|4.39|151.0|4|1|sense L1ME3B_dup3442|chr7:77930815-77931909:+|1.1425339456526389|0.05461085202534|4.39|151.0|4|1|sense L1ME3B_dup3442|chr7:77930815-77931909:+|1.1425339456526389|0.05461085202534|4.39|151.0|4|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 549.33642578125 2 548.834926 1095.6553 -0.019994 -1.0974E-05 -0.049733 -2.7295E-05 -0.069727 -3.8269E-05 549.3364134201979 23.021 0.072018 23.021 23.005 23.077 0 5 3 2 0 0 0 0.72333 1 2833 2833 0.69038 0 1 106440 57659 12711 36376 36394 66187 66187 0.1112972122211886 YRRKLVVY 8 Unmodified _YRRKLVVY_ 0 0 0 REV__ENSG00000186212|ENST00000334306|SOWAHB REV__ENSG00000186212|ENST00000334306|SOWAHB MULTI-MSMS UPN46_class_I_Rep_3 1 548.8349609375 2 548.834926 1095.6553 0.22464 0.00012329 0.029443 1.6159E-05 0.25409 0.00013945 548.834860570621 34.122 0.086838 34.122 34.065 34.151 0 6 4 2 0 0 0 0.82752 1 6047 6047 0.79363 0 1 365310 + 57660 20883 36377 36395 66188 66188 0.11129721222141598 YRRKPKPN 8 Unmodified _YRRKPKPN_ 0 0 0 L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|26|2|sense L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|26|2|sense L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 529.815185546875 2 529.814525 1057.6145 -0.12999 -6.8868E-05 -0.55504 -0.00029407 -0.68503 -0.00036294 529.8143180215461 23.288 0.53901 26.993 26.66 27.199 3.7042 71 49 2 0 0 0 0.82752 1 2880 2880 0.69038 0.69038 1 72915 57661 9567 36378 36396 66189 66189 0.08799379902507098 YRRKPKPN 8 Unmodified _YRRKPKPN_ 0 0 0 L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|26|2|sense L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|26|2|sense L1MA3_dup5322|chrX:79255063-79256722:+|1.3466553760087374|0.0449394900740115|4.91|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 529.8143310546875 2 529.814525 1057.6145 -0.1765 -9.3514E-05 -0.82113 -0.00043505 -0.99764 -0.00052856 529.8141757233494 23.483 0.53922 26.927 26.613 27.153 3.4447 84 49 2 0 0 0 0.82752 1 2898 2898 0.69038 0.69038 1 88161 57662 9567 36378 36396 66190 66190 0.08799379902507098 YRRLIRIK 8 Unmodified _YRRLIRIK_ 0 0 0 REV__MLT1A0_dup7445|chr5:131512677-131513022:+|1.2353350866234445|0.0202696206389381|5.93|151.0|19|1|anti-sense REV__MLT1A0_dup7445|chr5:131512677-131513022:+|1.2353350866234445|0.0202696206389381|5.93|151.0|19|1|anti-sense MSMS UPN46_class_I_Rep_3 1 559.3690185546875 2 559.369467 1116.72438 NaN NaN NaN NaN NaN NaN NaN 102.17 1 102.17 101.67 102.67 0 0 0 0 0.40746 1 24932 24932 0.69038 0 1 + 57663 31600 36379 36397 66191 66191 0.1706880524168355 YRRLLGARE 9 Unmodified _YRRLLGARE_ 0 0 0 REV__L1PA7_dup9459|chr10:97741134-97741773:+|1.4576176721402332|0.1718459051581506|3.08|151.0|20|1|anti-sense REV__L1PA7_dup9459|chr10:97741134-97741773:+|1.4576176721402332|0.1718459051581506|3.08|151.0|20|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.3312377929688 2 567.330539 1132.64652 0.48418 0.00027469 0.50504 0.00028652 0.98922 0.00056122 567.3306874299158 81.265 0.44016 84.922 84.601 85.041 3.6567 92 57 2 0 0 0 0.49187 1 19238 19238 1.4819 1.4819 1 269250 + 57664 30187 36380 36398 66192 66192 0.0855074758567298 YRRLPPAP 8 Unmodified _YRRLPPAP_ 0 0 0 REV__LTR7B_dup340|chr6:156975790-156976275:-|1.0963330448150204|0.0106098520457903|6.69|151.0|18|3|sense REV__LTR7B_dup340|chr6:156975790-156976275:-|1.0963330448150204|0.0106098520457903|6.69|151.0|18|3|sense MSMS UPN48_class_I_Rep_3 7 485.77099609375 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 32.644 1 36.333 35.833 36.833 3.6896 0 0 0 0.40738 1 4986 4986 0.79363 0 1 + 57665 31016 36381 36399 66193 66193 0.07004903608174118 YRRLPPWLAN 10 Unmodified _YRRLPPWLAN_ 0 0 0 AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense MSMS UPN47_class_I_Rep_1 2 643.3628540039062 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 64.825 1 68.181 67.681 68.681 3.3557 0 0 0 0.53105 1 15424 15424 1.4819 0.28856 1 57666 258 36382 36400 66194 66194 0.0781589365385571 YRRLPPWLAN 10 Unmodified _YRRLPPWLAN_ 0 0 0 AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense AluSq2_dup39074|chr11:117075841-117076148:-|1.8553943615613104|0.0555987612701073|5.06|151.0|17|3|anti-sense MSMS UPN48_class_I_Rep_1 5 643.06005859375 2 643.361839 1284.70913 NaN NaN NaN NaN NaN NaN NaN 96.073 1 99.685 99.185 100.19 3.6124 0 0 0 0.53105 1 23138 23138 1.4819 0 1 57667 258 36382 36400 66195 66195 0.0781589365385571 YRRLRFFVV 9 Unmodified _YRRLRFFVV_ 0 0 0 L1MC5_dup870|chr1:244700389-244700969:-|1.103012061216287|0.2391571327673688|2.21|151.0|48|3|anti-sense L1MC5_dup870|chr1:244700389-244700969:-|1.103012061216287|0.2391571327673688|2.21|151.0|48|3|anti-sense L1MC5_dup870|chr1:244700389-244700969:-|1.103012061216287|0.2391571327673688|2.21|151.0|48|3|anti-sense MSMS UPN46_class_I_Rep_3 1 628.3746948242188 2 628.374749 1254.73495 NaN NaN NaN NaN NaN NaN NaN 37.687 1 37.687 37.187 38.187 0 0 0 0 0.4029 1 7112 7112 0 0 1 57668 11703 36383 36401 66196 66196 0.11776787896110363 YRRLWLRV 8 Unmodified _YRRLWLRV_ 0 0 0 REV__ENSG00000165282|ENST00000378617|PIGO REV__ENSG00000165282|ENST00000378617|PIGO MSMS UPN47_class_I_Rep_2 3 581.3535766601562 2 581.353817 1160.69308 NaN NaN NaN NaN NaN NaN NaN 97.412 1 100.9 100.4 101.4 3.4836 0 0 0 0.40746 1 23915 23915 0.69038 0 1 + 57669 20113 36384 36402 66197 66197 0.11916232207590838 YRRNICSI 8 Unmodified _YRRNICSI_ 0 0 0 Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|15|2|sense Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|15|2|sense Charlie13a_dup185|chr5:81647550-81648465:-|2.1733297406743834|0.0195383143700511|6.8|151.0|15|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 512.7710571289062 2 512.771468 1023.52838 -0.28214 -0.00014467 -0.15405 -7.8991E-05 -0.43618 -0.00022366 512.7713552268262 14.626 0.51234 18.013 17.877 18.39 3.3871 125 60 3 0 0 0 0.82752 1 688 688 0 0 1 125290 57670 442 36385 36403 66198 66198 0.017560520054757944 YRRNPRLM 8 Unmodified _YRRNPRLM_ 0 0 0 REV__MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|2|1|sense REV__MER66-int_dup95|chr1:172559945-172561662:-|1.00816676553668|0.0593615985504076|4.09|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 553.3050537109375 2 553.30601 1104.59747 0.16574 9.1705E-05 -1.3874 -0.00076767 -1.2217 -0.00067596 553.305327112537 30.662 0.19414 30.662 30.617 30.811 0 21 14 2 0 0 0 0.82752 1 5053 5053 0.69038 0 1 47501 + 57671 31532 36386 36404 66199 66199 0.04935136025051179 YRRQKESF 8 Unmodified _YRRQKESF_ 0 0 0 Tigger4_dup1015|chr11:76479168-76480611:+|1.6184009861629307|0.0530191115092526|4.93|151.0|84|3|anti-sense Tigger4_dup1015|chr11:76479168-76480611:+|1.6184009861629307|0.0530191115092526|4.93|151.0|84|3|anti-sense Tigger4_dup1015|chr11:76479168-76480611:+|1.6184009861629307|0.0530191115092526|4.93|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_2 6 556.8048095703125 2 557.293622 1112.57269 NaN NaN NaN NaN NaN NaN NaN 88.954 1 92.692 92.192 93.192 3.7379 0 0 0 0.4044 1 21178 21178 4.756 0.81161 1 57672 33416 36387 36405 66200 66200 0.020907794233153254 YRRRHRHERTQ 11 Unmodified _YRRRHRHERTQ_ 0 0 0 ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18 ENST00000507405.5_1_5:138755893-138773164:-|nuORF ENST00000507405.5_1_5:138755893-138773164:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 532.2894897460938 3 532.289317 1593.84612 0.085883 4.5714E-05 0.29828 0.00015877 0.38416 0.00020449 532.2893272159065 45.593 0.67851 49.293 48.941 49.62 3.6999 67 35 2 0 0 0 0.68478 1 9592 9592 0.094841 0 1 165960 57673 4472 36388 36406 66201 66201 0.07295195586107184 YRRTRRQR 8 Unmodified _YRRTRRQR_ 0 0 0 L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|60|3|sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|60|3|sense L1MC_dup738|chr2:58095313-58097373:-|1.3872007254190204|0.1485299600643316|3.22|151.0|60|3|sense MSMS UPN47_class_I_Rep_2 3 596.3497924804688 2 596.350129 1190.6857 NaN NaN NaN NaN NaN NaN NaN 58.752 1 62.033 61.533 62.533 3.2818 0 0 0 0.40746 1 13624 13624 0.69038 0.088878 1 57674 11073 36389 36407 66202 66202 0.09798892659864578 YRRWDKSVS 9 Unmodified _YRRWDKSVS_ 0 0 0 REV__L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|50|3|sense REV__L1MA9_dup12338|chr12:76430330-76432303:+|1.6114547589379948|0.017823926311526|6.5|151.0|50|3|sense MSMS UPN48_class_I_Rep_3 7 598.812255859375 2 598.812179 1195.60981 NaN NaN NaN NaN NaN NaN NaN 68.767 1 72.276 71.776 72.776 3.5094 0 0 0 0.39598 1 15790 15790 1.6526 0.96225 1 + 57675 25604 36390 36408 66203 66203 0.019824509690806735 YRRWRRSWVP 10 Unmodified _YRRWRRSWVP_ 0 0 0 HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense;HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|384|2|anti-sense HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 488.2430725097656 3 487.937333 1460.79017 0.19335 9.4344E-05 1.8367 0.00089621 2.0301 0.00099056 487.93863198718475 35.043 0.19022 38.557 38.442 38.632 3.5144 21 17 2 0 0 0 0.84575 1 5671 5671 0.69767 0.19171 1 62654 57676 8030 36391 36409 66204 66204 0.07820594416580207 YRRWRRSWVP 10 Unmodified _YRRWRRSWVP_ 0 0 0 HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense;HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|384|2|anti-sense HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense MULTI-MATCH UPN46_class_I_Rep_3 1 3 487.937333 1460.79017 0.21901 0.00010686 2.2502 0.001098 2.4692 0.0012048 488.2713216368206 38.673 0.032448 38.673 38.644 38.676 0 -0.025994 0.0010163 NaN 0.69767 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 52399 57677 8030 36391 36409 0.07820594416580207 YRRWRRSWVP 10 Unmodified _YRRWRRSWVP_ 0 0 0 HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense;HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|384|2|anti-sense HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|48|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 3 487.937333 1460.79017 0.14135 6.8968E-05 -0.41227 -0.00020116 -0.27092 -0.00013219 488.2708797513424 35.195 0.036572 38.867 38.834 38.871 3.6721 0.16815 -0.002881 NaN 0.69767 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 31741 57678 8030 36391 36409 0.07820594416580207 YRSFDKETEL 10 Unmodified _YRSFDKETEL_ 0 0 0 REV__ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron REV__ENSG00000021776.11,AQR,chr15,-,I29.1,34870923,34873827|25|7.42|1|intron MULTI-MSMS UPN47_class_I_Rep_1 2 645.3111572265625 2 644.314417 1286.61428 0.48794 0.00031439 -2.378 -0.0015322 -1.8901 -0.0012178 644.314313979662 60.772 0.46716 64.154 63.801 64.268 3.3815 82 44 3 0 0 0 0.53004 1 14154 14154 8.1555 1.4324 1 144530 + 57679 17609 36392 36410 66205 66205 -0.017561293986545934 YRSGPRLI 8 Unmodified _YRSGPRLI_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MSMS UPN47_class_I_Rep_1 2 481.2832946777344 2 481.282526 960.550499 NaN NaN NaN NaN NaN NaN NaN 106.55 1 110.26 109.76 110.76 3.7088 0 0 0 0.40659 1 26119 26119 1.8442 0 1 57680 2992 36393 36411 66206 66206 0.06864599745563282 YRSIKSFEST 10 Unmodified _YRSIKSFEST_ 0 0 0 REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|96|3|sense REV__L1MA8_dup4292|chr7:64516451-64519546:+|2.856451540643246|0.2543100106072789|3.49|150.0|96|3|sense MSMS UPN47_class_I_Rep_3 4 406.5872497558594 3 406.543544 1216.6088 NaN NaN NaN NaN NaN NaN NaN 26.676 1 30.024 29.524 30.524 3.3478 0 0 0 0.53105 1 3938 3938 0.69767 0 1 + 57681 25557 36394 36412 66207 66207 0.009161918095060173 YRSKKKKKKK 10 Unmodified _YRSKKKKKKK_ 0 0 0 REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense REV__L1ME1_dup15830|chr8:140176160-140181278:-|8.187008499984112|0.2303969953028226|5.15|151.0|81|2|sense MSMS UPN48_class_I_Rep_1 5 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 62.015 1 65.483 64.983 65.983 3.4678 0 0 0 0.53105 1 13846 13846 0.13989 0 1 57682 27622 36395 36413 66208 66208 0.22417277055819795 YRSKMNKLY 9 Unmodified _YRSKMNKLY_ 0 0 0 REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 601.820556640625 2 601.821158 1201.62776 0.42303 0.00025459 0.12883 7.7532E-05 0.55185 0.00033212 601.8211700269622 50.584 0.60819 54.108 53.929 54.537 3.5246 62 39 2 0 0 0 0.49026 1 10338 10338 1.6526 0.17072 1 200530 + 57683 22007 36396 36414 66209 66209 0.03501449899590625 YRSLITRLHQY 11 Unmodified _YRSLITRLHQY_ 0 0 0 REV__ENSG00000110395|ENST00000264033|CBL REV__ENSG00000110395|ENST00000264033|CBL MULTI-MSMS UPN48_class_I_Rep_1 5 483.93658447265625 3 483.936887 1448.78883 0.16274 7.8756E-05 -0.4393 -0.00021259 -0.27656 -0.00013384 483.93664154706465 38.586 0.90079 42.091 41.717 42.618 3.5048 161 74 3 0 0 0 0.68024 1 6669 6669 0.50596 0 1 526860 + 57684 18430 36397 36415 66210 66210 0.08238915537162939 YRSMRIRI 8 Unmodified _YRSMRIRI_ 0 0 0 ENST00000517951.5_1_5:156822576-156936463:-|nuORF ENST00000517951.5_1_5:156822576-156936463:-|nuORF ENST00000517951.5_1_5:156822576-156936463:-|nuORF MSMS UPN47_class_I_Rep_1 2 547.8141479492188 2 547.81621 1093.61787 NaN NaN NaN NaN NaN NaN NaN 26.52 1 30.282 29.782 30.782 3.7624 0 0 0 0.40625 1 3805 3805 2.3027 0 1 57685 7213 36398 36416 66211 66211 0.07480306684851712 YRSNLLGF 8 Unmodified _YRSNLLGF_ 0 0 0 REV__PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|5|1|sense REV__PABL_A-int_dup188|chr8:23052586-23055435:+|2.269524731129405|0.0451215237168285|5.65|151.0|5|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 485.2615966796875 2 485.261259 968.507966 0.018627 9.0392E-06 0.068 3.2998E-05 0.086628 4.2037E-05 485.26123015170606 50.95 0.85446 54.545 54.175 55.029 3.5951 76 40 3 0 0 0 0.82752 1 11297 11297 0.79363 0 1 133240 + 57686 32150 36399 36417 66212 66212 0.022452046173384588 YRSTTKKP 8 Unmodified _YRSTTKKP_ 0 0 0 REV__L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|61|2|sense REV__L1M1_dup4576|chr9:17244518-17247730:-|1.1137266409233306|0.0189107111680004|5.88|149.0|61|2|sense MSMS UPN47_class_I_Rep_2 3 490.781494140625 2 490.779816 979.545079 NaN NaN NaN NaN NaN NaN NaN 113.52 1 117.03 116.53 117.53 3.5109 0 0 0 0.40643 1 27612 27612 2.0598 0 1 + 57687 24062 36400 36418 66213 66213 0.054488761630864246 YRSWVRLR 8 Unmodified _YRSWVRLR_ 0 0 0 L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|8|1|sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|8|1|sense L1MA3_dup1862|chr3:158258236-158261159:-|1.2979253334884877|0.0203968058597554|5.99|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 568.3272705078125 2 568.327799 1134.64105 NaN NaN NaN NaN NaN NaN NaN 111.8 1 115.37 114.87 115.87 3.572 0 0 0 0.40746 1 27581 27581 0.69038 0 1 57688 9492 36401 36419 66214 66214 0.07911068793828235 YRTAVYVL 8 Unmodified _YRTAVYVL_ 0 0 0 L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|103|3|sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|103|3|sense L1PBa_dup1151|chr8:129298656-129303194:-|1.64060393315404|0.0068878107888892|7.9|150.0|103|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 492.7785949707031 2 492.779285 983.544017 0.16906 8.331E-05 -0.20249 -9.9783E-05 -0.033428 -1.6473E-05 492.7791294514802 58.726 0.64582 62.143 61.881 62.527 3.4171 68 41 2 0 0 0 0.82752 1 13625 13625 4.3292 0 1 125540 57689 15353 36402 36420 66215 66215 0.051586617941893564 YRTGWHVKE 9 Unmodified _YRTGWHVKE_ 0 0 0 REV__ENST00000578586.1_1_17:80350276-80350507:-|nuORF REV__ENST00000578586.1_1_17:80350276-80350507:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 588.3006591796875 2 588.301447 1174.58834 0.44789 0.00026349 -0.35751 -0.00021032 0.090382 5.3172E-05 588.3012835329876 37.28 0.37952 40.787 40.573 40.952 3.507 58 40 2 0 0 0 0.43982 1 6325 6325 5.7319 0.97584 1 150890 + 57690 20732 36403 36421 66216 66216 0.008030659403630125 YRTIRLQR 8 Unmodified _YRTIRLQR_ 0 0 0 REV__HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|1|1|sense REV__HAL1ME_dup6368|chr12:76495733-76496360:-|1.0454935840553674|0.0136024545855945|6.26|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 553.3328247070312 2 553.333082 1104.65161 0.48602 0.00026893 -0.88553 -0.00048999 -0.3995 -0.00022106 553.3325076648899 88.076 0.48406 91.463 91.264 91.748 3.3873 72 53 2 0 0 0 0.82752 1 22136 22136 0.69038 0 1 126530 + 57691 23500 36404 36422 66217 66217 0.10347051448275124 YRTRWRKTKLW 11 Unmodified _YRTRWRKTKLW_ 0 0 0 L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|16|2|sense L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|16|2|sense L1MC1_dup12289|chr19:18496840-18497537:+|1.8441575749885637|0.0292122519963313|5.98|151.0|16|2|sense MSMS UPN46_class_I_Rep_3 1 531.9758911132812 3 531.975676 1592.9052 NaN NaN NaN NaN NaN NaN NaN 56.781 1 56.781 56.281 57.281 0 0 0 0 0.38417 1 12403 12403 0 0 1 57692 11113 36405 36423 66218 66218 0.1324627882772802 YRTTLIEE 8 Unmodified _YRTTLIEE_ 0 0 0 REV__L1ME3C_dup3149|chr18:63234879-63235679:+|1.8226079610264396|0.0471875218369577|5.27|151.0|3|1|sense REV__L1ME3C_dup3149|chr18:63234879-63235679:+|1.8226079610264396|0.0471875218369577|5.27|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 512.7689819335938 2 512.769114 1023.52368 NaN NaN NaN NaN NaN NaN NaN 32.814 1 36.101 35.601 36.601 3.2867 0 0 0 0.40604 1 5775 5775 2.5775 0 1 + 57693 28098 36406 36424 66219 66219 0.01285446343717922 YRTYIQLRNML 11 Unmodified _YRTYIQLRNML_ 0 0 0 L1MC5a_dup4402|chr4:86986371-86986849:+|1.1557033653713158|0.0275849787305056|5.39|151.0|13|3|sense L1MC5a_dup4402|chr4:86986371-86986849:+|1.1557033653713158|0.0275849787305056|5.39|151.0|13|3|sense L1MC5a_dup4402|chr4:86986371-86986849:+|1.1557033653713158|0.0275849787305056|5.39|151.0|13|3|sense MSMS UPN46_class_I_Rep_3 1 490.77392578125 3 490.934378 1469.7813 NaN NaN NaN NaN NaN NaN NaN 40.923 1 40.923 40.423 41.423 0 0 0 0 0.38417 1 7975 7975 0.50596 0 1 57694 11747 36407 36425 66220 66220 0.06520439945234102 YRVDNRHW 8 Unmodified _YRVDNRHW_ 0 0 0 L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|249|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|249|3|sense L1PB4_dup5359|chr11:88224645-88231720:-|1.3418562976122763|0.0195581845382657|6.1|151.0|249|3|sense MSMS UPN48_class_I_Rep_1 5 573.2843627929688 2 573.283589 1144.55262 NaN NaN NaN NaN NaN NaN NaN 48.292 1 51.816 51.316 52.316 3.5239 0 0 0 0.40746 1 9637 9637 0.69038 0 1 57695 15323 36408 36426 66221 66221 -0.01386971516626545 YRVKILFI 8 Unmodified _YRVKILFI_ 0 0 0 nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 nc|ENSG00000150093|P05556-4|ITGB1 nc|ENSG00000150093|P05556-4|ITGB1 MULTI-SECPEP UPN47_class_I_Rep_1 2 525.6442260742188 2 526.33677 1050.65899 0.44364 0.0002335 -0.053861 -2.8349E-05 0.38978 0.00020515 526.838079219481 99.15 0.027191 102.94 102.92 102.95 3.7926 4 2 2 0 0 0 0.72333 1 24528 24528 0.69038 0 1 27470 57696 16710 36409 36427 66222 66222 0.1356839099598801 YRVKLALLLLF 11 Unmodified _YRVKLALLLLF_ 0 0 0 REV__ENST00000567040.5_1_16:30087698-30094972:+|nuORF REV__ENST00000567040.5_1_16:30087698-30094972:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 450.6303405761719 3 450.295353 1347.86423 0.22862 0.00010295 0.41636 0.00018749 0.64499 0.00029043 450.295411924893 53.69 0.67905 57.3 57.003 57.682 3.6098 57 49 2 0 0 0 0.68478 1 11256 11256 0.094841 0.011491 1 63262 + 57697 19626 36410 36428 66223 66223 0.204211247355488 YRVKLLSL 8 Unmodified _YRVKLLSL_ 0 0 0 REV__L1MB3_dup427|chr1:51380250-51381311:+|3.3261851805239826|0.0354601686214151|6.55|151.0|40|1|anti-sense REV__L1MB3_dup427|chr1:51380250-51381311:+|3.3261851805239826|0.0354601686214151|6.55|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 496.3184814453125 2 496.318577 990.622602 0.20823 0.00010335 0.091866 4.5595E-05 0.3001 0.00014894 496.3185267617958 43.142 0.76676 46.904 46.635 47.402 3.7617 93 60 2 0 0 0 0.82752 1 8143 8143 7.2892 0.56607 1 142600 + 57698 25889 36411 36429 66224 66224 0.12691514099276446 YRVKLLSL 8 Unmodified _YRVKLLSL_ 0 0 0 REV__L1MB3_dup427|chr1:51380250-51381311:+|3.3261851805239826|0.0354601686214151|6.55|151.0|40|1|anti-sense REV__L1MB3_dup427|chr1:51380250-51381311:+|3.3261851805239826|0.0354601686214151|6.55|151.0|40|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 496.31854248046875 2 496.318577 990.622602 0.16891 8.3833E-05 -0.10418 -5.1705E-05 0.064734 3.2129E-05 496.31845402844425 43.306 0.81753 46.945 46.623 47.441 3.6385 92 62 2 0 0 0 0.82752 1 8101 8101 4.756 0.42677 1 142460 + 57699 25889 36411 36429 66225 66225 0.12691514099276446 YRVLIGQFY 9 Unmodified _YRVLIGQFY_ 0 0 0 LTR12_dup120|chr3:11348247-11349286:-|1.3306281978886494|0.0564150244253734|4.56|151.0|46|1|anti-sense LTR12_dup120|chr3:11348247-11349286:-|1.3306281978886494|0.0564150244253734|4.56|151.0|46|1|anti-sense LTR12_dup120|chr3:11348247-11349286:-|1.3306281978886494|0.0564150244253734|4.56|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_3 7 579.8065185546875 2 579.818941 1157.62333 NaN NaN NaN NaN NaN NaN NaN 40.481 1 44.131 43.631 44.631 3.6509 0 0 0 0.35339 1 7204 7204 7.9102 0.62092 1 57700 15525 36412 36430 66226 66226 0.05082308748342257 YRVPISVF 8 Unmodified _YRVPISVF_ 0 0 0 LTR12C_dup2334|chr15:30883574-30885113:+|1.985582684130528|0.0921136575769285|4.43|149.0|58|2|anti-sense LTR12C_dup2334|chr15:30883574-30885113:+|1.985582684130528|0.0921136575769285|4.43|149.0|58|2|anti-sense LTR12C_dup2334|chr15:30883574-30885113:+|1.985582684130528|0.0921136575769285|4.43|149.0|58|2|anti-sense MSMS UPN47_class_I_Rep_3 4 490.7819519042969 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 31.933 1 35.232 34.732 35.732 3.2991 0 0 0 0.40746 1 5505 5505 0.69038 0 1 57701 15540 36413 36431 66227 66227 0.05850965656816243 YRVPTGAL 8 Unmodified _YRVPTGAL_ 0 0 0 THE1B-int_dup113|chr1:93242516-93244021:-|2.212139163054544|0.3171055955838593|2.8|151.0|26|2|sense;THE1A-int_dup313|chr3:130863945-130865502:+|5.5494505931699605|0.1057816353091414|5.71|151.0|5|1|sense THE1B-int_dup113|chr1:93242516-93244021:-|2.212139163054544|0.3171055955838593|2.8|151.0|26|2|sense THE1B-int_dup113|chr1:93242516-93244021:-|2.212139163054544|0.3171055955838593|2.8|151.0|26|2|sense MULTI-MSMS UPN46_class_I_Rep_3 1 438.76934814453125 2 438.750527 875.486502 0.13889 6.094E-05 0.6707 0.00029427 0.80959 0.00035521 438.7504514325264 42.703 0.063759 42.703 42.646 42.71 0 4 2 2 0 0 0 0.82752 1 8465 8465 7.9102 0 1 62092 57702 32871 36414 36432 66228 66228 0.04377819588614784 YRVSGNQIF 9 Unmodified _YRVSGNQIF_ 0 0 0 REV__L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|20|3|sense REV__L1MD_dup3546|chr7:29666464-29667204:-|1.0168378985134767|0.085589060198557|3.57|150.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 542.282470703125 2 542.282723 1082.55089 0.43739 0.00023719 0.13491 7.3159E-05 0.5723 0.00031035 542.282667908222 44.554 0.86488 48.192 47.826 48.691 3.6372 113 57 3 0 0 0 0.28552 1 8393 8393 14.838 0 1 190640 + 57703 27266 36415 36433 66229 66229 0.012919746747684258 YRVSNKKV 8 Unmodified _YRVSNKKV_ 0 0 0 REV__SAR1A|p.G133Vfs*31|1|0.05|ENSG00000079332|chr10:70153920-70153920|C/-|frameshift_variant REV__SAR1A|p.G133Vfs*31|1|0.05|ENSG00000079332|chr10:70153920-70153920|C/-|frameshift_variant MULTI-MSMS UPN47_class_I_Rep_2 3 497.29486083984375 2 497.295633 992.576714 -0.15369 -7.6431E-05 0.01861 9.2546E-06 -0.13508 -6.7176E-05 497.2955735550397 36.096 0.68279 39.507 39.164 39.847 3.4114 92 49 2 0 0 0 0.82752 1 6673 6673 3.9444 0 1 176250 + 57704 32183 36416 36434 66230 66230 0.0801286891704649 YRVYAGHK 8 Unmodified _YRVYAGHK_ 0 0 0 LTR6A_dup242|chr19:58256304-58256878:-|2.3359497430423994|0.2974324318638259|2.97|151.0|27|1|anti-sense LTR6A_dup242|chr19:58256304-58256878:-|2.3359497430423994|0.2974324318638259|2.97|151.0|27|1|anti-sense LTR6A_dup242|chr19:58256304-58256878:-|2.3359497430423994|0.2974324318638259|2.97|151.0|27|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 497.26708984375 2 497.266876 992.519199 0.22976 0.00011425 -0.027311 -1.3581E-05 0.20245 0.00010067 497.26680431161026 40.193 0.85534 43.934 43.582 44.437 3.7413 167 90 2 0 0 0 0.82752 2 7236 7202;7236 8.5933 0 1 192220 57705 15695 36417 36435 66231;66232 66232 0.022640267114638846 YRWFLQHR 8 Unmodified _YRWFLQHR_ 0 0 0 ENST00000504720.5_1_5:79374662-79378961:+|nuORF;nc|ENSG00000105664|P49747-2|COMP;CON__ENSEMBL:ENSBTAP00000006074;ENSG00000105664|ENST00000222271|COMP;ENSG00000113296|ENST00000350881|THBS4 ENST00000504720.5_1_5:79374662-79378961:+|nuORF ENST00000504720.5_1_5:79374662-79378961:+|nuORF MSMS UPN46_class_I_Rep_3 1 603.322021484375 2 603.319974 1204.6254 NaN NaN NaN NaN NaN NaN NaN 82.44 1 82.44 81.94 82.94 0 0 0 0 0.40746 1 19530 19530 0.69038 0.088878 1 + 57706 626 36418 36436 66233 66233 0.03126782276785889 YRWGGSRI 8 Unmodified _YRWGGSRI_ 0 0 0 REV__Tigger1_dup2874|chr3:196360981-196361824:+|1.052068277035559|0.0609619826708001|4.11|151.0|20|3|sense REV__Tigger1_dup2874|chr3:196360981-196361824:+|1.052068277035559|0.0609619826708001|4.11|151.0|20|3|sense MSMS UPN46_class_I_Rep_3 1 497.76495361328125 2 497.764501 993.514448 NaN NaN NaN NaN NaN NaN NaN 118.89 1 118.89 118.39 119.39 0 0 0 0 0.40604 1 29528 29528 2.5775 0 1 + 57707 32412 36419 36437 66234 66234 0.017431425687163937 YRWLLCVFP 9 Unmodified _YRWLLCVFP_ 0 0 0 REV__L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|86|2|anti-sense REV__L1MB5_dup9153|chr20:1431186-1433096:-|1.2672921757692697|0.3176961939374023|2.0|151.0|86|2|anti-sense MSMS UPN48_class_I_Rep_2 6 598.8181762695312 2 598.817887 1195.62122 NaN NaN NaN NaN NaN NaN NaN 62.513 1 65.987 65.487 66.487 3.4738 0 0 0 0.39326 1 13977 13977 2.3027 0.4585 1 + 57708 26104 36420 36438 66235 66235 0.03123556738842126 YRWLVFMF 8 Unmodified _YRWLVFMF_ 0 0 0 MLT1C_dup14384|chr13:40964278-40964561:-|1.023289558711494|0.0205925626753379|5.63|151.0|18|2|anti-sense MLT1C_dup14384|chr13:40964278-40964561:-|1.023289558711494|0.0205925626753379|5.63|151.0|18|2|anti-sense MLT1C_dup14384|chr13:40964278-40964561:-|1.023289558711494|0.0205925626753379|5.63|151.0|18|2|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7315063476562 2 581.29933 1160.58411 NaN NaN NaN NaN NaN NaN NaN 76.334 1 79.591 79.091 80.091 3.2573 0 0 0 0.40738 1 18974 18974 0.79363 0.19213 1 57709 16297 36421 36439 66236 66236 0.010238851931035242 YRWMSPNQR 9 Unmodified _YRWMSPNQR_ 0 0 0 nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;ENST00000421817.5_1_2:182412449-182414421:-|nuORF nc|ENSG00000188452|Q49MI3-5|CERKL nc|ENSG00000188452|Q49MI3-5|CERKL MSMS UPN48_class_I_Rep_1 5 619.298583984375 2 619.298381 1236.58221 NaN NaN NaN NaN NaN NaN NaN 65.429 1 68.883 68.383 69.383 3.4541 0 0 0 0.39598 1 14886 14886 1.6526 0 1 57710 5233 36422 36440 66237 66237 -0.026617755628194573 YRWMSPNQR 9 Unmodified _YRWMSPNQR_ 0 0 0 nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;ENST00000421817.5_1_2:182412449-182414421:-|nuORF nc|ENSG00000188452|Q49MI3-5|CERKL nc|ENSG00000188452|Q49MI3-5|CERKL MSMS UPN48_class_I_Rep_2 6 619.2977294921875 2 619.298381 1236.58221 NaN NaN NaN NaN NaN NaN NaN 64.28 1 67.755 67.255 68.255 3.4743 0 0 0 0.37891 1 14519 14519 5.7319 2.4505 1 57711 5233 36422 36440 66238 66238 -0.026617755628194573 YRWNVYFK 8 Unmodified _YRWNVYFK_ 0 0 0 L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|99|3|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|99|3|sense L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|99|3|sense MSMS UPN48_class_I_Rep_1 5 588.302490234375 2 588.303458 1174.59236 NaN NaN NaN NaN NaN NaN NaN 35.623 1 39.133 38.633 39.633 3.5101 0 0 0 0.40746 1 5849 5849 0.69038 0.088878 1 57712 13871 36423 36441 66239 66239 0.012051554340587245 YRYCRLRT 8 Unmodified _YRYCRLRT_ 0 0 0 REV__L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|32|2|sense REV__L1MC3_dup267|chr1:84131533-84133511:+|1.0594807124354069|0.0547687003095436|4.27|148.0|32|2|sense MSMS UPN47_class_I_Rep_3 4 565.7999267578125 2 565.798017 1129.58148 NaN NaN NaN NaN NaN NaN NaN 17.023 1 20.381 19.881 20.881 3.3581 0 0 0 0.40746 1 1170 1170 0.69038 0.088878 1 + 57713 26730 36424 36442 66240 66240 0.021874297881367966 YRYFFNYK 8 Unmodified _YRYFFNYK_ 0 0 0 REV__L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|136|2|anti-sense REV__L1MB7_dup17644|chr14:90762860-90765497:+|1.0386172473139612|0.0523779926648728|4.31|151.0|136|2|anti-sense MSMS UPN47_class_I_Rep_1 2 600.7978515625 2 600.795466 1199.57638 NaN NaN NaN NaN NaN NaN NaN 66.337 1 69.695 69.195 70.195 3.3576 0 0 0 0.40746 1 15884 15884 0.69038 0 1 + 57714 26172 36425 36443 66241 66241 -0.015425508028329205 YRYIKLDYT 9 Unmodified _YRYIKLDYT_ 0 0 0 REV__L1MC4_dup13530|chr9:131663100-131664895:-|1.6413693418389752|0.0346200079768732|5.57|151.0|26|2|sense REV__L1MC4_dup13530|chr9:131663100-131664895:-|1.6413693418389752|0.0346200079768732|5.57|151.0|26|2|sense MULTI-MSMS UPN47_class_I_Rep_2 3 617.8272094726562 2 617.826963 1233.63937 0.40194 0.00024833 -1.0685 -0.00066013 -0.66654 -0.00041181 617.8260716904446 69.53 0.47987 72.806 72.433 72.913 3.2761 51 36 2 0 0 0 0.50088 1 16901 16901 0.52476 0 1 79116 + 57715 26809 36426 36444 66242 66242 0.03189970194557645 YRYIWWEG 8 Unmodified _YRYIWWEG_ 0 0 0 ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron;ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|3|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron ENSG00000070269.14,TMEM260,chr14,+,I20.1,56636599,56647242|26|6.56|2|intron MSMS UPN48_class_I_Rep_1 5 586.3038940429688 2 586.779816 1171.54508 NaN NaN NaN NaN NaN NaN NaN 24.067 1 27.633 27.133 28.133 3.5655 0 0 0 0.40746 1 2600 2600 0.69038 0 1 57716 1070 36427 36445 66243 66243 -0.03383123836943014 YRYKRFSHT 9 Unmodified _YRYKRFSHT_ 0 0 0 REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|9|1|sense REV__LTR53-int_dup123|chrX:51816761-51819120:+|1.7759649099420731|0.0779790519404626|4.51|149.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 629.32861328125 2 629.327996 1256.64144 NaN NaN NaN NaN NaN NaN NaN 54.528 1 58.097 57.597 58.597 3.5694 0 0 0 0.39428 1 11472 11472 2.0598 0 1 + 57717 30970 36428 36446 66244 66244 0.023384437230106414 YRYLRPVL 8 Unmodified _YRYLRPVL_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS UPN46_class_I_Rep_3 1 540.3219604492188 2 540.321651 1078.62875 0.36379 0.00019656 0.45248 0.00024448 0.81627 0.00044105 540.3218357137537 110.43 0.10355 110.43 110.39 110.49 0 14 10 3 0 0 0 0.82752 1 27204 27204 0.69038 0 1 260500 + 57718 19202 36429 36447 66245 66245 0.09258032330808419 YRYLYKEQ 8 Unmodified _YRYLYKEQ_ 0 0 0 REV__ENST00000473310.5_1_1:207242783-207244892:+|nuORF REV__ENST00000473310.5_1_1:207242783-207244892:+|nuORF MSMS UPN46_class_I_Rep_3 1 581.7977294921875 2 581.798206 1161.58186 NaN NaN NaN NaN NaN NaN NaN 91.065 1 91.065 90.565 91.565 0 0 0 0 0.40746 1 21978 21978 0.69038 0 1 + 57719 18790 36430 36448 66246 66246 0.007531279890145015 YRYPIRVHC 9 Unmodified _YRYPIRVHC_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MSMS UPN47_class_I_Rep_2 3 603.8150634765625 2 603.813667 1205.61278 NaN NaN NaN NaN NaN NaN NaN 32.126 1 35.595 35.095 36.095 3.4691 0 0 0 0.36505 1 5526 5526 7.2892 2.5332 1 + 57720 20654 36431 36449 66247 66247 0.01820002822250899 YRYPIRVHC 9 Unmodified _YRYPIRVHC_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MSMS UPN47_class_I_Rep_2 3 603.8148803710938 2 603.813667 1205.61278 NaN NaN NaN NaN NaN NaN NaN 32.265 1 35.72 35.22 36.22 3.4547 0 0 0 0.36505 1 5567 5567 7.2892 2.5332 1 + 57721 20654 36431 36449 66248 66248 0.01820002822250899 YRYPIRVHC 9 Unmodified _YRYPIRVHC_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MSMS UPN47_class_I_Rep_3 4 603.8154907226562 2 603.813667 1205.61278 NaN NaN NaN NaN NaN NaN NaN 32.325 1 35.612 35.112 36.112 3.2867 0 0 0 0.36505 1 5625 5625 7.2892 2.5332 1 + 57722 20654 36431 36449 66249 66249 0.01820002822250899 YRYPIRVHC 9 Unmodified _YRYPIRVHC_ 0 0 0 REV__ENSG00000178502|ENST00000319121|KLHL11 REV__ENSG00000178502|ENST00000319121|KLHL11 MSMS UPN47_class_I_Rep_3 4 603.814208984375 2 603.813667 1205.61278 NaN NaN NaN NaN NaN NaN NaN 32.458 1 35.745 35.245 36.245 3.2867 0 0 0 0.38639 1 5666 5666 3.9444 1.8846 1 + 57723 20654 36431 36449 66250 66250 0.01820002822250899 YRYTGLRHV 9 Unmodified _YRYTGLRHV_ 0 0 0 REV__LTR46_dup179|chr14:60094379-60094819:+|2.4318769845590062|0.4546640275151472|2.42|151.0|15|1|anti-sense REV__LTR46_dup179|chr14:60094379-60094819:+|2.4318769845590062|0.4546640275151472|2.42|151.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.8165893554688 2 582.817264 1163.61998 0.12661 7.3788E-05 -1.2035 -0.00070142 -1.0769 -0.00062763 582.8165953487094 43.227 0.54441 46.585 46.343 46.888 3.358 67 37 2 0 0 0 0.46869 1 8976 8976 3.9444 0 1 93111 + 57724 30931 36432 36450 66251 66251 0.04471058694321073 YRYYNNIVV 9 Unmodified _YRYYNNIVV_ 0 0 0 REV__ENST00000587989.1_1_17:42264441-42265023:+|nuORF REV__ENST00000587989.1_1_17:42264441-42265023:+|nuORF MSMS UPN48_class_I_Rep_1 5 602.3114013671875 2 602.31148 1202.60841 NaN NaN NaN NaN NaN NaN NaN 76.133 1 79.633 79.133 80.133 3.4996 0 0 0 0.4029 1 18076 18076 0 0 1 + 57725 23152 36433 36451 66252 66252 0.015208168802928412 YSAEISLAF 9 Unmodified _YSAEISLAF_ 0 0 0 ENST00000392722.3_1_X:100793145-100793415:-|nuORF ENST00000392722.3_1_X:100793145-100793415:-|nuORF ENST00000392722.3_1_X:100793145-100793415:-|nuORF MSMS UPN48_class_I_Rep_3 7 500.7648010253906 2 500.752933 999.491313 NaN NaN NaN NaN NaN NaN NaN 38.199 1 41.859 41.359 42.359 3.6595 0 0 0 0.39428 1 6536 6536 2.0598 0 1 57726 6528 36434 36452 66253 66253 -0.00845341059277871 YSAILLLPT 9 Unmodified _YSAILLLPT_ 0 0 0 L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|122|3|anti-sense L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|122|3|anti-sense L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|122|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 495.7972106933594 2 495.797143 989.579734 0.27799 0.00013783 -0.32028 -0.00015879 -0.042285 -2.0965E-05 495.7968550395886 88.854 0.2304 92.592 92.459 92.689 3.7379 42 29 2 0 0 0 0.41259 2 21134 21134;21177 7.2892 0 1 134020 57727 13282 36435 36453 66254;66255 66254 0.0845269925117691 YSAILLLPT 9 Unmodified _YSAILLLPT_ 0 0 0 L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|122|3|anti-sense L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|122|3|anti-sense L1MEf_dup4905|chr7:37240307-37242022:-|4.562453336925229|0.0417743344773895|6.77|151.0|122|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 495.79718017578125 2 495.797143 989.579734 0.266 0.00013188 -0.28405 -0.00014083 -0.018042 -8.9452E-06 495.79693291846587 89.227 0.2677 93.056 92.889 93.157 3.8293 41 33 2 0 0 0 0.46869 1 21183 21183 3.9444 0 1 100700 57728 13282 36435 36453 66256 66256 0.0845269925117691 YSALKGKKW 9 Unmodified _YSALKGKKW_ 0 0 0 nc|ENSG00000174527|Q8N1T3-2|MYO1H nc|ENSG00000174527|Q8N1T3-2|MYO1H nc|ENSG00000174527|Q8N1T3-2|MYO1H MULTI-MSMS UPN48_class_I_Rep_1 5 540.8142700195312 2 540.813659 1079.61277 0.38002 0.00020552 -0.048519 -2.624E-05 0.3315 0.00017928 540.8135615143252 49.42 0.58292 52.944 52.696 53.279 3.5246 55 38 2 0 0 0 0.46869 1 9958 9958 3.9444 0 1 114000 57729 16757 36436 36454 66257 66257 0.07614326093880663 YSAVFRAHF 9 Unmodified _YSAVFRAHF_ 0 0 0 REV__ENST00000471337.5_1_1:45805924-45808422:+|nuORF REV__ENST00000471337.5_1_1:45805924-45808422:+|nuORF MSMS UPN47_class_I_Rep_2 3 549.280029296875 2 549.279983 1096.54541 NaN NaN NaN NaN NaN NaN NaN 81.873 1 85.257 84.757 85.757 3.3839 0 0 0 0.35339 1 20402 20402 7.9102 0 1 + 57730 19033 36437 36455 66258 66258 0.0010029588295310532 YSCIHHFF 8 Unmodified _YSCIHHFF_ 0 0 0 REV__Tigger1_dup6545|chr8:116860004-116860731:+|1.165972038824537|0.1201545116272564|3.28|150.0|46|2|anti-sense REV__Tigger1_dup6545|chr8:116860004-116860731:+|1.165972038824537|0.1201545116272564|3.28|150.0|46|2|anti-sense MSMS UPN48_class_I_Rep_3 7 527.2329711914062 2 527.234187 1052.45382 NaN NaN NaN NaN NaN NaN NaN 68.656 1 72.165 71.665 72.665 3.5094 0 0 0 0.39408 1 15758 15758 10.183 1.5901 1 + 57731 32501 36438 36456 66259 66259 -0.07030710805906892 YSCYIYEI 8 Unmodified _YSCYIYEI_ 0 0 0 REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|135|3|anti-sense REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|135|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 527.2333984375 2 527.233519 1052.45248 0.35289 0.00018606 -0.71579 -0.00037739 -0.36289 -0.00019133 527.2330963862794 68.72 0.46373 72.175 71.945 72.409 3.4548 63 38 2 0 0 0 0.82752 1 15853 15853 8.5933 3.3626 1 126080 + 57732 28633 36439 36457 66260 66260 -0.07164389685317474 YSCYIYEI 8 Unmodified _YSCYIYEI_ 0 0 0 REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|135|3|anti-sense REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|135|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 527.23291015625 2 527.233519 1052.45248 0.40997 0.00021615 -0.85724 -0.00045197 -0.44727 -0.00023582 527.2330732866941 68.592 0.42937 72.1 71.872 72.301 3.5083 48 38 2 0 0 0 0.82752 2 15794 15794;15832 8.5933 0 1 154860 + 57733 28633 36439 36457 66261;66262 66261 -0.07164389685317474 YSCYIYEI 8 Unmodified _YSCYIYEI_ 0 0 0 REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|135|3|anti-sense REV__L1MEf_dup4439|chr6:107394647-107396575:-|1.984903682037256|0.0553927412272017|5.16|151.0|135|3|anti-sense MSMS UPN48_class_I_Rep_3 7 527.233154296875 2 527.233519 1052.45248 NaN NaN NaN NaN NaN NaN NaN 68.377 1 71.886 71.386 72.386 3.5094 0 0 0 0.39819 1 15676 15676 8.5933 1.8701 1 + 57734 28633 36439 36457 66263 66263 -0.07164389685317474 YSDAFLNDSY 10 Unmodified _YSDAFLNDSY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS UPN47_class_I_Rep_1 2 597.751708984375 2 597.751118 1193.48768 0.41534 0.00024827 0.088293 5.2777E-05 0.50363 0.00030104 597.751137163301 61.324 0.61689 64.706 64.387 65.004 3.3815 74 43 2 0 0 0 0.22807 4 14323 14323;14365;14405;14455 40.725 21.363 1 157160 57735 1596 36440 36458 66264;66265;66266;66267 66264 -0.10132055623807901 YSDAFLNDSY 10 Unmodified _YSDAFLNDSY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS UPN47_class_I_Rep_2 3 597.752197265625 2 597.751118 1193.48768 0.46122 0.00027569 0.16142 9.6489E-05 0.62264 0.00037218 597.7510792071621 61.509 0.56501 64.769 64.489 65.054 3.2594 58 33 2 0 0 0 0.2823 4 14459 14403;14418;14459;14499 35.612 15.198 1 195370 57736 1596 36440 36458 66268;66269;66270;66271 66270 -0.10132055623807901 YSDAFLNDSY 10 Unmodified _YSDAFLNDSY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS UPN47_class_I_Rep_3 4 597.7504272460938 2 597.751118 1193.48768 0.39319 0.00023503 0.22776 0.00013614 0.62095 0.00037118 597.7510816989118 61.569 0.64192 64.736 64.444 65.086 3.1667 99 46 3 0 0 0 0.22158 5 14512 14478;14512;14554;14595;14600 53.317 23.476 1 196220 57737 1596 36440 36458 66272;66273;66274;66275;66276 66273 -0.10132055623807901 YSDKAEKNLI 10 Unmodified _YSDKAEKNLI_ 0 0 0 REV__L1M3_dup6633|chr21:35001478-35002163:+|6.752765103838088|0.0082184346827818|9.68|151.0|14|2|sense REV__L1M3_dup6633|chr21:35001478-35002163:+|6.752765103838088|0.0082184346827818|9.68|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 590.81494140625 2 590.814053 1179.61355 0.45967 0.00027158 0.0094176 5.5641E-06 0.46909 0.00027714 590.8141609185532 68.971 0.73061 72.426 72.072 72.803 3.4548 79 55 2 0 0 0 0.51021 1 15905 15905 10.8 1.2555 1 278440 + 57738 24304 36441 36459 66277 66277 0.03093075952278923 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS UPN47_class_I_Rep_3 4 533.2479858398438 2 533.248015 1064.48148 0.029656 1.5814E-05 0.15885 8.4709E-05 0.18851 0.00010052 533.247995072917 41.989 2.111 45.228 44.822 46.933 3.2394 408 150 4 0 0 0 0.012331 10 8562 8486;8522;8562;8600;8643;8680;8724;8764;8805;8855 137.42 79.952 1 1239800 57739 4268 36442 36460 66278;66279;66280;66281;66282;66283;66284;66285;66286;66287 66280 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 533.248015 1064.48148 -0.017439 -9.2992E-06 0.22743 0.00012128 0.20999 0.00011198 533.2480294896209 41.531 2.1341 45.211 44.801 46.935 3.6792 -0.0098364 5.0951E-06 NaN 137.42 349 150 4 NaN NaN NaN NaN 0 NaN NaN 0 1586200 57740 4268 36442 36460 -0.0481852906466429 YSDKYGLGY 9 Unmodified _YSDKYGLGY_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 533.248015 1064.48148 -0.052721 -2.8114E-05 0.28516 0.00015206 0.23244 0.00012395 533.2480700374065 41.857 2.4007 45.222 44.818 47.218 3.3655 0.0018561 6.6665E-05 NaN 137.42 389 167 4 NaN NaN NaN NaN 0 NaN NaN 0 1212600 57741 4268 36442 36460 -0.0481852906466429 YSDNPKHY 8 Unmodified _YSDNPKHY_ 0 0 0 Charlie1a_dup562|chr2:26072420-26073011:+|1.3344387139311995|0.0519289199145786|4.68|151.0|25|1|anti-sense Charlie1a_dup562|chr2:26072420-26073011:+|1.3344387139311995|0.0519289199145786|4.68|151.0|25|1|anti-sense Charlie1a_dup562|chr2:26072420-26073011:+|1.3344387139311995|0.0519289199145786|4.68|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_3 7 512.2306518554688 2 512.230156 1022.44576 NaN NaN NaN NaN NaN NaN NaN 39.507 1 43.163 42.663 43.663 3.6557 0 0 0 0.40581 1 6920 6920 2.8892 0.58649 1 57742 488 36443 36461 66288 66288 -0.06456566521671903 YSDRSSGGSY 10 Unmodified _YSDRSSGGSY_ 0 0 0 nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF nc|ENSG00000099622|Q14011|CIRBP nc|ENSG00000099622|Q14011|CIRBP MULTI-MSMS UPN47_class_I_Rep_3 4 539.7251586914062 2 539.725435 1077.43632 -0.41805 -0.00022563 -0.13083 -7.0611E-05 -0.54888 -0.00029624 539.7252647672597 15.919 0.43198 19.281 19.125 19.557 3.3619 120 51 3 0 0 0 0.29657 2 922 890;922 34.222 5.9479 1 120110 57743 1441 36444 36462 66289;66290 66290 -0.09930379597835781 YSDSCGFVLI 10 Unmodified _YSDSCGFVLI_ 0 0 0 L1MA3_dup536|chr1:212772704-212774392:+|1.460981434270849|0.0148727166625719|6.62|150.0|76|1|anti-sense L1MA3_dup536|chr1:212772704-212774392:+|1.460981434270849|0.0148727166625719|6.62|150.0|76|1|anti-sense L1MA3_dup536|chr1:212772704-212774392:+|1.460981434270849|0.0148727166625719|6.62|150.0|76|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.7597045898438 2 552.257525 1102.5005 0.53002 0.00029271 0.014541 8.0303E-06 0.54456 0.00030074 552.2574188095308 76.132 0.35754 79.632 79.43 79.788 3.4996 62 40 2 0 0 0 0.54078 1 18106 18106 6.7232 0 1 81530 57744 9571 36445 36463 66291 66291 -0.046653157652599475 YSDSDDELTV 10 Unmodified _YSDSDDELTV_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MSMS UPN48_class_I_Rep_3 7 572.2380981445312 2 572.238041 1142.46153 NaN NaN NaN NaN NaN NaN NaN 16.717 1 20.266 19.766 20.766 3.5486 0 0 0 0.53105 1 851 851 0 0 1 57745 856 36446 36464 66292 66292 -0.10400369585977387 YSDYLFHLG 9 Unmodified _YSDYLFHLG_ 0 0 0 L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|74|1|anti-sense;L1MDa_dup638|chr2:87609028-87610835:+|1.2335513220373229|0.0254736515307267|5.6|151.0|74|1|anti-sense L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|74|1|anti-sense L1MDa_dup785|chr2:111339995-111341802:-|2.107990254015806|0.0486668836983459|5.44|151.0|74|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.3228149414062 2 557.763832 1113.51311 0.50967 0.00028428 -0.5024 -0.00028022 0.0072687 4.0542E-06 557.7634411339667 73.05 0.39924 76.531 76.172 76.571 3.4812 46 28 2 0 0 0 0.46434 1 17095 17095 4.3292 2.0265 1 127330 57746 12149 36447 36465 66293 66293 -0.039105363107410085 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(61)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN47_class_I_Rep_1 2 589.7498168945312 2 589.74973 1177.48491 0.3087 0.00018206 0.051081 3.0125E-05 0.35978 0.00021218 589.7496796582194 52.84 0.85971 56.398 56.083 56.943 3.5585 101 50 3 0 0 0 0.023254 4 11780 11725;11735;11780;11822 61.357 34.474 1 363430 57747 1497 36448 36466 66294;66295;66296;66297 66296 44 -0.09673647072963831 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(46)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN47_class_I_Rep_1 2 589.7492065429688 2 589.74973 1177.48491 0.38258 0.00022563 -0.66353 -0.00039132 -0.28095 -0.00016569 589.7491700790715 57.354 0.9487 60.792 60.563 61.512 3.437 134 71 2 0 0 0 0.056917 1 13170 13170 46.021 11.919 1 166450 57748 1497 36448 36466 66298 66298 44 -0.09673647072963831 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(61)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN47_class_I_Rep_2 3 589.7500610351562 2 589.74973 1177.48491 0.5165 0.00030461 -0.33713 -0.00019882 0.17937 0.00010578 589.7494773856027 53.032 0.86378 56.358 56.044 56.908 3.3266 125 55 4 0 0 0 0.023254 3 11878 11839;11878;11924 61.357 32.871 1 419980 57749 1497 36448 36466 66299;66300;66301 66300 44 -0.09673647072963831 YSEEIVEMY 9 Oxidation (M) _YSEEIVEM(Oxidation (M))Y_ YSEEIVEM(1)Y YSEEIVEM(59)Y 0 0 1 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS UPN47_class_I_Rep_3 4 589.7496948242188 2 589.74973 1177.48491 0.49274 0.0002906 -0.11344 -6.6904E-05 0.3793 0.00022369 589.7495661125665 53.121 0.79575 56.316 56.044 56.84 3.1948 107 45 3 0 0 0 0.027484 3 11949 11949;11989;12036 58.679 36.932 1 409560 57750 1497 36448 36466 66302;66303;66304 66302 44 -0.09673647072963831 YSEEIVEMY 9 Unmodified _YSEEIVEMY_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MSMS UPN47_class_I_Rep_1 2 581.732177734375 2 581.752272 1161.48999 NaN NaN NaN NaN NaN NaN NaN 63.259 1 66.619 66.119 67.119 3.3595 0 0 0 0.29868 1 14956 14956 10.824 2.9138 1 57751 1497 36448 36467 66305 66305 -0.08429343210355 YSEEIVEMY 9 Unmodified _YSEEIVEMY_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MSMS UPN47_class_I_Rep_3 4 581.7515258789062 2 581.752272 1161.48999 NaN NaN NaN NaN NaN NaN NaN 63.514 1 66.683 66.183 67.183 3.1698 0 0 0 0.2088 1 15129 15129 15.847 7.937 1 57752 1497 36448 36467 66306 66306 -0.08429343210355 YSEKRTYF 8 Unmodified _YSEKRTYF_ 0 0 0 REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2 REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2 MULTI-SECPEP UPN47_class_I_Rep_1 2 547.3328247070312 2 547.269281 1092.52401 0.39025 0.00021357 0.098833 5.4088E-05 0.48909 0.00026766 547.2690745452899 68.638 0.21892 72.002 71.955 72.174 3.3646 22 16 2 0 0 0 0.72333 1 16629 16629 2.0598 0 1 43127 + 57753 17548 36449 36468 66307 66307 -0.018551339364194064 YSEKRTYF 8 Unmodified _YSEKRTYF_ 0 0 0 REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2 REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2 MULTI-MATCH UPN47_class_I_Rep_3 4 2 547.269281 1092.52401 0.43181 0.00023631 -1.4278 -0.0007814 -0.99601 -0.00054508 547.2684579634865 68.775 0.089554 71.972 71.93 72.02 3.1977 -0.01489 -0.0012034 NaN 2.0598 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 29033 + 57754 17548 36449 36468 -0.018551339364194064 YSELCTHY 8 Unmodified _YSELCTHY_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|23|1|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|23|1|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 508.2116394042969 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 67.498 1 71.006 70.506 71.506 3.5077 0 0 0 0.40581 1 15412 15412 2.8892 0.31174 1 57755 10776 36450 36469 66308 66308 -0.09494731004940604 YSENILNS 8 Unmodified _YSENILNS_ 0 0 0 nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6 nc|ENSG00000206384|A6NMZ7-2|COL6A6 nc|ENSG00000206384|A6NMZ7-2|COL6A6 MSMS UPN46_class_I_Rep_3 1 470.2225036621094 2 470.224539 938.434526 NaN NaN NaN NaN NaN NaN NaN 17.207 1 17.207 16.707 17.707 0 0 0 0 0.40625 1 1319 1319 2.3027 0.4585 1 57756 5568 36451 36470 66309 66309 -0.037153886157966554 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MULTI-MSMS UPN47_class_I_Rep_1 2 482.55413818359375 3 482.554331 1444.64116 -0.25542 -0.00012325 0.058943 2.8443E-05 -0.19648 -9.4811E-05 482.5542794661673 41.313 1.4902 44.985 44.574 46.064 3.6719 256 109 4 0 0 0 0.2651 7 8309 8186;8225;8266;8309;8349;8389;8430 24.229 24.229 1 276150 57757 2820 36452 36471 66310;66311;66312;66313;66314;66315;66316 66313 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MSMS UPN47_class_I_Rep_1 2 482.5542297363281 3 482.554331 1444.64116 NaN NaN NaN NaN NaN NaN NaN 42.472 1 46.151 45.651 46.651 3.6792 0 0 0 0.36105 1 8637 8637 8.2864 1.2493 1 57758 2820 36452 36471 66317 66317 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MULTI-MSMS UPN47_class_I_Rep_2 3 482.55426025390625 3 482.554331 1444.64116 -0.18418 -8.8875E-05 0.046605 2.2489E-05 -0.13757 -6.6386E-05 482.55429149866103 41.757 0.9883 45.122 44.678 45.666 3.3655 186 76 3 0 0 0 0.27276 6 8486 8330;8370;8409;8450;8486;8529 35.793 25.478 1 249000 57759 2820 36452 36471 66318;66319;66320;66321;66322;66323 66322 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MSMS UPN47_class_I_Rep_2 3 482.2973327636719 3 482.554331 1444.64116 NaN NaN NaN NaN NaN NaN NaN 43.09 1 46.448 45.948 46.948 3.358 0 0 0 0.38417 1 8853 8853 2.2527 1.0379 1 57760 2820 36452 36471 66324 66324 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MULTI-MSMS UPN47_class_I_Rep_3 4 482.5544128417969 3 482.554331 1444.64116 -0.28525 -0.00013765 0.24381 0.00011765 -0.041443 -1.9999E-05 482.55437661386867 41.814 0.51259 45.051 44.71 45.222 3.2372 94 44 3 0 0 0 0.27276 2 8519 8479;8519 20.411 10.096 1 239750 57761 2820 36452 36471 66325;66326 66326 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MSMS UPN47_class_I_Rep_3 4 482.5542907714844 3 482.554331 1444.64116 NaN NaN NaN NaN NaN NaN NaN 41.944 1 45.183 44.683 45.683 3.2394 0 0 0 0.020529 1 8557 8557 32.518 13.374 1 57762 2820 36452 36471 66327 66327 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MSMS UPN47_class_I_Rep_3 4 482.55419921875 3 482.554331 1444.64116 NaN NaN NaN NaN NaN NaN NaN 42.086 1 45.325 44.825 45.825 3.2394 0 0 0 0.13848 1 8601 8601 20.411 8.893 1 57763 2820 36452 36471 66328 66328 -0.06337020787486836 YSEYPPFSHRY 11 Unmodified _YSEYPPFSHRY_ 0 0 0 ENSG00000133872|ENST00000256255|SARAF;nc|ENSG00000133872|Q96BY9-2|SARAF ENSG00000133872|ENST00000256255|SARAF ENSG00000133872|ENST00000256255|SARAF MSMS UPN47_class_I_Rep_3 4 482.5542297363281 3 482.554331 1444.64116 NaN NaN NaN NaN NaN NaN NaN 42.248 1 45.487 44.987 45.987 3.2394 0 0 0 0.19882 1 8651 8651 17.572 4.716 1 57764 2820 36452 36471 66329 66329 -0.06337020787486836 YSFFNRLF 8 Unmodified _YSFFNRLF_ 0 0 0 REV__L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|33|1|anti-sense REV__L1MEf_dup5167|chr7:76643149-76643912:+|1.492384733799604|0.0847360149742934|4.14|151.0|33|1|anti-sense MSMS UPN48_class_I_Rep_2 6 547.2774658203125 2 547.276909 1092.53927 NaN NaN NaN NaN NaN NaN NaN 56.593 1 60.127 59.627 60.627 3.5333 0 0 0 0.40604 1 12167 12167 2.5775 0 1 + 57765 28664 36453 36472 66330 66330 -0.0033022234858890442 YSFHDGNKH 9 Unmodified _YSFHDGNKH_ 0 0 0 REV__nc|ENSG00000005156|P49916-4|LIG3 REV__nc|ENSG00000005156|P49916-4|LIG3 MSMS UPN47_class_I_Rep_1 2 552.7469482421875 2 552.746505 1103.47846 NaN NaN NaN NaN NaN NaN NaN 49.916 1 53.545 53.045 54.045 3.6285 0 0 0 0.39518 1 10900 10900 1.8442 0 1 + 57766 17525 36454 36473 66331 66331 -0.06914359398820125 YSFHFITSI 9 Unmodified _YSFHFITSI_ 0 0 0 Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|20|1|sense Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|20|1|sense Zaphod3_dup378|chr4:102679275-102681022:-|2.0355234055687985|0.1580575374657899|3.69|151.0|20|1|sense MSMS UPN48_class_I_Rep_3 7 557.7821655273438 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 76.885 1 80.486 79.986 80.986 3.6016 0 0 0 0.39428 1 18127 18127 2.0598 0 1 57767 33472 36455 36474 66332 66332 -0.0027365941400603333 YSFHSVNPLL 10 Unmodified _YSFHSVNPLL_ 0 0 0 REV__Tigger3d_dup113|chr3:71285935-71286236:-|1.1242072856726404|0.0021521014095955|9.03|150.0|24|2|anti-sense REV__Tigger3d_dup113|chr3:71285935-71286236:-|1.1242072856726404|0.0021521014095955|9.03|150.0|24|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.7484130859375 2 588.806031 1175.59751 0.40028 0.00023569 -0.066501 -3.9156E-05 0.33378 0.00019653 588.8059280994224 56.284 0.66354 59.456 59.224 59.888 3.1721 73 40 2 0 0 0 0.56333 1 13020 13020 1.4819 0 1 168440 + 57768 32772 36456 36475 66333 66333 0.01673414506035442 YSFPIWTTI 9 Unmodified _YSFPIWTTI_ 0 0 0 REV__MSTA-int_dup984|chr5:71096963-71098431:+|1.598803340793869|0.3013525666756532|2.41|151.0|73|2|anti-sense REV__MSTA-int_dup984|chr5:71096963-71098431:+|1.598803340793869|0.3013525666756532|2.41|151.0|73|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 564.2928466796875 2 564.292225 1126.5699 0.20532 0.00011586 -0.62292 -0.00035151 -0.4176 -0.00023565 564.2919853269905 48.904 0.65167 52.563 52.252 52.904 3.6592 95 44 3 0 0 0 0.35081 1 10523 10523 10.824 0 1 148560 + 57769 31885 36457 36476 66334 66334 0.011675112457851355 YSFPIWTTI 9 Unmodified _YSFPIWTTI_ 0 0 0 REV__MSTA-int_dup984|chr5:71096963-71098431:+|1.598803340793869|0.3013525666756532|2.41|151.0|73|2|anti-sense REV__MSTA-int_dup984|chr5:71096963-71098431:+|1.598803340793869|0.3013525666756532|2.41|151.0|73|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.291748046875 2 564.292225 1126.5699 0.45047 0.0002542 -0.65599 -0.00037017 -0.20552 -0.00011597 564.2918208233259 49.395 0.75855 52.63 52.291 53.05 3.2345 92 45 3 0 0 0 0.46869 1 10750 10750 3.9444 0 1 166170 + 57770 31885 36457 36476 66335 66335 0.011675112457851355 YSFPLWLSNF 10 Unmodified _YSFPLWLSNF_ 0 0 0 L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|342|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|342|3|anti-sense L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|342|3|anti-sense MSMS UPN48_class_I_Rep_3 7 637.3152465820312 2 637.316232 1272.61791 NaN NaN NaN NaN NaN NaN NaN 39.678 1 43.334 42.834 43.834 3.6557 0 0 0 0.53105 1 6968 6968 1.4819 0 1 57771 9731 36458 36477 66336 66336 -0.007494148341493201 YSFRFYIL 8 Unmodified _YSFRFYIL_ 0 0 0 L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|184|2|anti-sense L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|184|2|anti-sense L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|184|2|anti-sense MSMS UPN48_class_I_Rep_2 6 554.68603515625 2 554.794935 1107.57532 NaN NaN NaN NaN NaN NaN NaN 111.99 1 115.65 115.15 116.15 3.6666 0 0 0 0.40738 1 26656 26656 0.79363 0 1 57772 13785 36459 36478 66337 66337 0.025832348282847306 YSFRRPVW 8 Unmodified _YSFRRPVW_ 0 0 0 nc|ENSG00000239389|Q9Y5I0-2|PCDHA13;ENSG00000239389|ENST00000289272|PCDHA13 nc|ENSG00000239389|Q9Y5I0-2|PCDHA13 nc|ENSG00000239389|Q9Y5I0-2|PCDHA13 MSMS UPN48_class_I_Rep_3 7 555.3082885742188 2 555.795801 1109.57705 NaN NaN NaN NaN NaN NaN NaN 41.192 1 44.838 44.338 45.338 3.6458 0 0 0 0.40604 1 7413 7413 2.5775 0 1 57773 5699 36460 36479 66338 66338 0.026642886369018015 YSFTFPSPVY 10 Unmodified _YSFTFPSPVY_ 0 0 0 L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|194|3|anti-sense L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|194|3|anti-sense L1MB2_dup4457|chr9:95163876-95166601:-|1.2687893542772997|0.031957389745269|5.31|151.0|194|3|anti-sense MSMS UPN47_class_I_Rep_2 3 604.2891235351562 2 604.28714 1206.55973 NaN NaN NaN NaN NaN NaN NaN 24.522 1 27.988 27.488 28.488 3.4655 0 0 0 0.53105 1 3263 3263 1.4819 0.68827 1 57774 10248 36461 36480 66339 66339 -0.0352909647940578 YSFVLQSYFS 10 Unmodified _YSFVLQSYFS_ 0 0 0 MER39_dup1941|chr9:113432611-113433090:-|1.5023903656713815|0.0102557547118287|7.19|149.0|13|3|sense MER39_dup1941|chr9:113432611-113433090:-|1.5023903656713815|0.0102557547118287|7.19|149.0|13|3|sense MER39_dup1941|chr9:113432611-113433090:-|1.5023903656713815|0.0102557547118287|7.19|149.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 620.7969970703125 2 620.797872 1239.58119 NaN NaN NaN NaN NaN NaN NaN 45.515 1 49.215 48.715 49.715 3.6999 0 0 0 0.53105 1 9567 9567 1.4819 0.15237 1 57775 15928 36462 36481 66340 66340 -0.029017114507041697 YSGDCYFYLV 10 Unmodified _YSGDCYFYLV_ 0 0 0 REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 615.2625122070312 2 615.262807 1228.51106 0.45008 0.00027692 -0.44316 -0.00027266 0.0069223 4.259E-06 615.2626503949319 60.242 0.3525 63.64 63.543 63.895 3.3982 54 33 2 0 0 0 0.51565 4 14053 14039;14053;14057;14093 10.074 4.8433 1 120880 + 57776 27570 36463 36482 66341;66342;66343;66344 66342 -0.09405333110862557 YSGDCYFYLV 10 Unmodified _YSGDCYFYLV_ 0 0 0 REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense MSMS UPN47_class_I_Rep_1 2 615.2642211914062 2 615.262807 1228.51106 NaN NaN NaN NaN NaN NaN NaN 60.141 1 63.539 63.039 64.039 3.3982 0 0 0 0.53105 1 14018 14018 3.9444 1.4459 1 + 57777 27570 36463 36482 66345 66345 -0.09405333110862557 YSGDCYFYLV 10 Unmodified _YSGDCYFYLV_ 0 0 0 REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 615.2634887695312 2 615.262807 1228.51106 0.48283 0.00029707 -0.43527 -0.0002678 0.047561 2.9263E-05 615.2625007392566 60.535 0.38543 63.801 63.591 63.976 3.2654 46 32 2 0 0 0 0.51003 3 14173 14135;14173;14192 10.824 3.7222 1 113070 + 57778 27570 36463 36482 66346;66347;66348 66347 -0.09405333110862557 YSGDCYFYLV 10 Unmodified _YSGDCYFYLV_ 0 0 0 REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 614.7695922851562 2 615.262807 1228.51106 0.48283 0.00029707 -0.43527 -0.0002678 0.047561 2.9263E-05 615.2625007392566 60.535 0.38543 63.801 63.591 63.976 3.2654 46 32 2 0 0 0 0.84575 1 14216 14216 1.6526 0.45928 1 113070 + 57779 27570 36463 36482 66349 66349 -0.09405333110862557 YSGDCYFYLV 10 Unmodified _YSGDCYFYLV_ 0 0 0 REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense REV__L1ME1_dup11015|chr6:34995423-34996476:-|1.1065244987597704|0.1162704467185449|3.25|151.0|12|1|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 615.262807 1228.51106 0.45008 0.00027692 -0.44316 -0.00027266 0.0069223 4.259E-06 615.2626503949319 60.242 0.3525 63.64 63.543 63.895 3.3982 -0.080164 -4.6935E-06 NaN 10.824 54 33 2 NaN NaN NaN NaN 0 NaN NaN 0 120880 + 57780 27570 36463 36482 -0.09405333110862557 YSGDDCSELRC 11 Unmodified _YSGDDCSELRC_ 0 0 0 TNR|p.S464Afs*11|1|0.12|ENSG00000116147|chr1:175391406-175391406|G/-|frameshift_variant;nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR TNR|p.S464Afs*11|1|0.12|ENSG00000116147|chr1:175391406-175391406|G/-|frameshift_variant TNR|p.S464Afs*11|1|0.12|ENSG00000116147|chr1:175391406-175391406|G/-|frameshift_variant MSMS UPN48_class_I_Rep_2 6 624.2363891601562 2 624.236995 1246.45944 NaN NaN NaN NaN NaN NaN NaN 46.952 1 50.701 50.201 51.201 3.7494 0 0 0 0.38417 1 9234 9234 1.1933 0.50296 1 57781 2165 36464 36483 66350 66350 -0.15393444867049766 YSGDPKTI 8 Unmodified _YSGDPKTI_ 0 0 0 REV__HERVFH19-int_dup8|chr2:37130402-37132310:+|1.124894866733705|0.0803410970062438|3.81|151.0|30|3|sense REV__HERVFH19-int_dup8|chr2:37130402-37132310:+|1.124894866733705|0.0803410970062438|3.81|151.0|30|3|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 440.7991943359375 2 440.724175 879.433798 -0.12253 -5.4001E-05 -3.6859 -0.0016244 -3.8084 -0.0016784 440.7223650189302 49.388 0.081741 53.047 52.982 53.064 3.6592 6 5 2 0 0 0 0.72333 1 10739 10739 2.3027 0 1 29992 + 57782 23649 36465 36484 66351 66351 -0.010741832648591298 YSGKVKSSL 9 Unmodified _YSGKVKSSL_ 0 0 0 ENST00000562977.1_1_16:28962332-28970171:+|nuORF;ENST00000565752.5_1_16:28962332-28963698:+|nuORF;ENSG00000176953|ENST00000320805|NFATC2IP ENST00000562977.1_1_16:28962332-28970171:+|nuORF ENST00000562977.1_1_16:28962332-28970171:+|nuORF MSMS UPN48_class_I_Rep_2 6 484.77435302734375 2 484.7742 967.533846 NaN NaN NaN NaN NaN NaN NaN 49.293 1 53.011 52.511 53.511 3.7175 0 0 0 0.29868 1 9944 9944 10.824 0 1 57783 4774 36466 36485 66352 66352 0.04878054068944948 YSGQFVMEGF 10 Unmodified _YSGQFVMEGF_ 0 0 0 nc|ENSG00000110911|P49281-5|SLC11A2;ENSG00000110911|ENST00000262052|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2;nc|ENSG00000110911|P49281-3|SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2 nc|ENSG00000110911|P49281-5|SLC11A2 nc|ENSG00000110911|P49281-5|SLC11A2 MSMS UPN48_class_I_Rep_2 6 582.7548217773438 2 582.755149 1163.49575 NaN NaN NaN NaN NaN NaN NaN 54.551 1 58.133 57.633 58.633 3.5817 0 0 0 0.53105 1 11541 11541 2.7352 0 1 57784 1957 36467 36486 66353 66353 -0.0794619990801948 YSGQGFMTAH 10 Unmodified _YSGQGFMTAH_ 0 0 0 REV__ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron REV__ENSG00000163659.13,TIPARP,chr3,+,I5.1,156676695,156677656|26|8.02|1|intron MSMS UPN47_class_I_Rep_1 2 549.7371826171875 2 549.737291 1097.46003 NaN NaN NaN NaN NaN NaN NaN 75.054 1 78.448 77.948 78.948 3.3937 0 0 0 0.53105 1 18504 18504 2.9952 0.41776 1 + 57785 19996 36468 36487 66354 66354 -0.08480237365029097 YSGQKRIHC 9 Unmodified _YSGQKRIHC_ 0 0 0 REV__L1MC5a_dup14168|chr15:100939109-100940120:-|1.478710898936426|0.024033968685902|5.94|151.0|1|1|sense REV__L1MC5a_dup14168|chr15:100939109-100940120:-|1.478710898936426|0.024033968685902|5.94|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 546.272705078125 2 546.274375 1090.5342 NaN NaN NaN NaN NaN NaN NaN 28.061 1 31.618 31.118 32.118 3.5571 0 0 0 0.39518 1 3704 3704 1.8442 0.19162 1 + 57786 27129 36469 36488 66355 66355 -0.007448494828395269 YSGYKFLIR 9 Unmodified _YSGYKFLIR_ 0 0 0 L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|74|1|anti-sense L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|74|1|anti-sense L1M4_dup19883|chr20:32119375-32121119:-|1.8410003326352875|0.0209257119222892|6.46|151.0|74|1|anti-sense MSMS UPN48_class_I_Rep_1 5 573.800537109375 2 573.818941 1145.62333 NaN NaN NaN NaN NaN NaN NaN 67.678 1 71.129 70.629 71.629 3.4517 0 0 0 0.29868 1 15574 15574 10.824 4.6181 1 57787 8880 36470 36489 66356 66356 0.0563430874833557 YSHCCEID 8 Unmodified _YSHCCEID_ 0 0 0 L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|53|1|anti-sense L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|53|1|anti-sense L1MB2_dup1354|chr3:33088412-33089890:+|4.440762739970548|0.4021366475825123|3.47|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 485.17572021484375 2 485.175678 968.336803 NaN NaN NaN NaN NaN NaN NaN 71.73 1 75.28 74.78 75.78 3.5505 0 0 0 0.40798 1 16756 16756 0 0 1 57788 10210 36471 36490 66357 66357 -0.14863236807821067 YSHCVDVYI 9 Unmodified _YSHCVDVYI_ 0 0 0 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 MULTI-MSMS UPN48_class_I_Rep_3 7 549.7498168945312 2 549.749867 1097.48518 0.4304 0.00023661 -0.070844 -3.8946E-05 0.35956 0.00019767 549.7497883542947 62.157 0.75819 65.668 65.095 65.854 3.5104 118 67 2 0 0 0 0.25207 1 13651 13651 16.942 0 1 199290 57789 1071 36472 36491 66358 66358 -0.059661825624516496 YSHCVDVYI 9 Unmodified _YSHCVDVYI_ 0 0 0 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 MSMS UPN48_class_I_Rep_3 7 549.7499389648438 2 549.749867 1097.48518 NaN NaN NaN NaN NaN NaN NaN 66.052 1 69.56 69.06 70.06 3.5077 0 0 0 0.11494 1 14974 14974 21.747 0 1 57790 1071 36472 36491 66359 66359 -0.059661825624516496 YSHDDYCSPY 10 Unmodified _YSHDDYCSPY_ 0 0 0 REV__L1ME3B_dup5649|chr12:11038202-11038928:-|1.2260831228194753|0.1648844406272316|2.89|151.0|29|1|anti-sense REV__L1ME3B_dup5649|chr12:11038202-11038928:-|1.2260831228194753|0.1648844406272316|2.89|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_2 6 625.22509765625 2 625.226953 1248.43935 NaN NaN NaN NaN NaN NaN NaN 49.058 1 52.775 52.275 53.275 3.7175 0 0 0 0.53105 1 9870 9870 1.8442 1.2427 1 + 57791 28068 36473 36492 66360 66360 -0.17492872535353854 YSHHHHRH 8 Unmodified _YSHHHHRH_ 0 0 0 ENST00000457665.5_1_22:38746838-38794807:-|nuORF ENST00000457665.5_1_22:38746838-38794807:-|nuORF ENST00000457665.5_1_22:38746838-38794807:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_3 7 555.2582397460938 2 555.758072 1109.50159 0.29747 0.00016532 2.2633 0.0012578 2.5608 0.0014232 555.7591082524071 49.718 0.15166 53.339 53.31 53.461 3.621 11 8 2 0 0 0 0.72333 1 10028 10028 5.2307 3.3864 1 96250 57792 6840 36474 36493 66361 66361 -0.04877875770807805 YSHHHHRH 8 Unmodified _YSHHHHRH_ 0 0 0 ENST00000457665.5_1_22:38746838-38794807:-|nuORF ENST00000457665.5_1_22:38746838-38794807:-|nuORF ENST00000457665.5_1_22:38746838-38794807:-|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 555.758072 1109.50159 0.43291 0.00024059 0.056009 3.1128E-05 0.48892 0.00027172 555.7576530154045 49.299 0.20127 53.017 52.896 53.097 3.7175 -0.16129 -0.0016922 NaN 5.2307 14 13 2 NaN NaN NaN NaN 0 NaN NaN 0 95872 57793 6840 36474 36493 -0.04877875770807805 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.7825927734375 2 563.782025 1125.5495 0.49649 0.00027991 -0.071163 -4.012E-05 0.42533 0.00023979 563.7819561972675 67.771 0.55496 71.222 70.981 71.536 3.4517 58 39 2 0 0 0 0.28552 1 15599 15599 14.838 0 1 128150 + 57794 26963 36475 36494 66362 66362 -0.008256594140220841 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 564.3031616210938 2 563.782025 1125.5495 0.49649 0.00027991 -0.071163 -4.012E-05 0.42533 0.00023979 563.7819561972675 67.771 0.55496 71.222 70.981 71.536 3.4517 58 39 2 0 0 0 0.118 1 15573 15573 10.074 0 1 128150 + 57795 26963 36475 36494 66363 66363 -0.008256594140220841 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 563.782470703125 2 563.782025 1125.5495 0.50343 0.00028383 0.054115 3.0509E-05 0.55755 0.00031434 563.781970466557 67.669 0.33191 71.166 71.023 71.354 3.4964 40 30 2 0 0 0 0.23293 1 15534 15534 18.146 0 1 172270 + 57796 26963 36475 36494 66364 66364 -0.008256594140220841 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 564.3587646484375 2 563.782025 1125.5495 0.50485 0.00028463 -0.075296 -4.245E-05 0.42956 0.00024218 563.781818850845 67.476 0.21996 70.972 70.829 71.049 3.4964 27 19 2 0 0 0 0.10301 1 15501 15501 18.146 0 1 83144 + 57797 26963 36475 36494 66365 66365 -0.008256594140220841 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 564.3592529296875 2 563.782025 1125.5495 0.50343 0.00028383 0.054115 3.0509E-05 0.55755 0.00031434 563.781970466557 67.669 0.33191 71.166 71.023 71.354 3.4964 40 30 2 0 0 0 0.12099 1 15598 15598 6.7232 0 1 172270 + 57798 26963 36475 36494 66366 66366 -0.008256594140220841 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 564.358642578125 2 563.782025 1125.5495 0.48589 0.00027394 -0.094569 -5.3316E-05 0.39132 0.00022062 563.7819900690796 67.509 0.45856 71.017 70.676 71.134 3.5077 57 40 2 0 0 0 0.12099 1 15431 15431 3.5965 0 1 242350 + 57799 26963 36475 36494 66367 66367 -0.008256594140220841 YSHIPYLSF 9 Unmodified _YSHIPYLSF_ 0 0 0 REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense REV__L1MC4a_dup10078|chr21:29338669-29339440:-|1.1852830822272262|0.0828621026557277|3.84|151.0|41|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 563.782025 1125.5495 0.48885 0.0002756 -0.89678 -0.00050559 -0.40794 -0.00022999 563.782349477839 67.741 0.0755 71.249 71.217 71.292 3.5077 0.041465 -0.0010438 NaN 18.146 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 79182 + 57800 26963 36475 36494 -0.008256594140220841 YSHKMKYLVIR 11 Unmodified _YSHKMKYLVIR_ 0 0 0 L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|44|3|sense L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|44|3|sense L1MB8_dup12267|chr13:32612923-32614278:-|1.089544167204999|0.0167315126981718|6.03|151.0|44|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.9394836425781 3 479.939352 1436.79623 0.34333 0.00016478 -0.99725 -0.00047862 -0.65392 -0.00031384 479.9389290469188 13.035 0.31125 16.69 16.605 16.916 3.6549 58 42 2 0 0 0 0.68132 1 216 216 0.40827 0 1 37627 57801 10925 36476 36495 66368 66368 0.09529931813221992 YSHKWLCL 8 Unmodified _YSHKWLCL_ 0 0 0 REV__ENST00000578217.1_1_17:26731487-26732732:-|nuORF REV__ENST00000578217.1_1_17:26731487-26732732:-|nuORF MSMS UPN47_class_I_Rep_1 2 525.2649536132812 2 525.265487 1048.51642 NaN NaN NaN NaN NaN NaN NaN 28.257 1 32.023 31.523 32.523 3.7662 0 0 0 0.40738 1 4326 4326 0.79363 0 1 + 57802 23114 36477 36496 66369 66369 -0.005895647377201385 YSHLVLRN 8 Unmodified _YSHLVLRN_ 0 0 0 Tigger17a_dup809|chr6:42022986-42023613:+|6.360930843572285|0.2503821821195864|4.67|151.0|27|1|anti-sense Tigger17a_dup809|chr6:42022986-42023613:+|6.360930843572285|0.2503821821195864|4.67|151.0|27|1|anti-sense Tigger17a_dup809|chr6:42022986-42023613:+|6.360930843572285|0.2503821821195864|4.67|151.0|27|1|anti-sense MSMS UPN46_class_I_Rep_3 1 501.2799377441406 2 501.279983 1000.54541 NaN NaN NaN NaN NaN NaN NaN 95.279 1 95.279 94.779 95.779 0 0 0 0 0.40604 1 23126 23126 2.5775 0 1 57803 33261 36478 36497 66370 66370 0.04516295882945087 YSHPILLQ 8 Unmodified _YSHPILLQ_ 0 0 0 L1MA5A_dup1610|chr7:140895409-140896134:-|1.2979714305826222|0.0148019577930918|6.45|151.0|28|1|anti-sense L1MA5A_dup1610|chr7:140895409-140896134:-|1.2979714305826222|0.0148019577930918|6.45|151.0|28|1|anti-sense L1MA5A_dup1610|chr7:140895409-140896134:-|1.2979714305826222|0.0148019577930918|6.45|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_1 5 485.7720031738281 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 25.521 1 29.088 28.588 29.588 3.5667 0 0 0 0.40746 1 2986 2986 0.69038 0 1 57804 9936 36479 36498 66371 66371 0.042383752771456784 YSHRIKLL 8 Unmodified _YSHRIKLL_ 0 0 0 REV__L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|92|1|anti-sense REV__L1MA2_dup2694|chr6:127303757-127306381:+|4.651768498389225|0.151395476433935|4.94|151.0|92|1|anti-sense MSMS UPN47_class_I_Rep_1 2 515.3129272460938 2 515.313826 1028.6131 NaN NaN NaN NaN NaN NaN NaN 83.077 1 86.616 86.116 87.116 3.5386 0 0 0 0.40746 1 20768 20768 0.69038 0 1 + 57805 24842 36480 36499 66372 66372 0.09993745813744681 YSHYGEEYEG 10 Unmodified _YSHYGEEYEG_ 0 0 0 L1MA4_dup8884|chr16:17462817-17464208:+|4.414123301084334|0.0888229950730087|5.64|151.0|11|1|sense L1MA4_dup8884|chr16:17462817-17464208:+|4.414123301084334|0.0888229950730087|5.64|151.0|11|1|sense L1MA4_dup8884|chr16:17462817-17464208:+|4.414123301084334|0.0888229950730087|5.64|151.0|11|1|sense MSMS UPN48_class_I_Rep_2 6 617.2376708984375 2 617.238375 1232.4622 NaN NaN NaN NaN NaN NaN NaN 118.7 1 122.37 121.87 122.87 3.6642 0 0 0 0.53105 1 28469 28469 1.4819 0 1 57806 9738 36481 36500 66373 66373 -0.14473530146233315 YSIAFAKLS 9 Unmodified _YSIAFAKLS_ 0 0 0 REV__MER101-int_dup471|chr6:166918829-166920936:+|1.7610708115595226|0.1477888574226688|3.57|151.0|79|3|sense REV__MER101-int_dup471|chr6:166918829-166920936:+|1.7610708115595226|0.1477888574226688|3.57|151.0|79|3|sense MSMS UPN48_class_I_Rep_3 7 500.2808532714844 2 500.279118 998.543683 NaN NaN NaN NaN NaN NaN NaN 43.03 1 46.671 46.171 47.171 3.6415 0 0 0 0.38478 1 7958 7958 4.3292 0 1 + 57807 31059 36482 36501 66374 66374 0.04435242074339385 YSIAIWFIL 9 Unmodified _YSIAIWFIL_ 0 0 0 L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|47|2|anti-sense L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|47|2|anti-sense L1MEg_dup12039|chr15:28676234-28677126:-|1.5328384701894753|0.4125635371561483|1.89|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_3 7 563.3187866210938 2 563.320786 1124.62702 NaN NaN NaN NaN NaN NaN NaN 71.698 1 75.225 74.725 75.725 3.5266 0 0 0 0.074 1 16668 16668 30.225 0 1 57808 13356 36483 36502 66375 66375 0.0696897852217262 YSIEKPLKF 9 Unmodified _YSIEKPLKF_ 0 0 0 ENST00000469317.1_1_3:123247245-123301172:-|nuORF;ENSG00000206527|ENST00000383657|HACD2 ENST00000469317.1_1_3:123247245-123301172:-|nuORF ENST00000469317.1_1_3:123247245-123301172:-|nuORF MSMS UPN48_class_I_Rep_1 5 562.82177734375 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 47.677 1 51.199 50.699 51.699 3.5219 0 0 0 0.32573 1 9448 9448 9.3831 2.66 1 57809 5571 36484 36503 66376 66376 0.07087773171224399 YSIEKPLKF 9 Unmodified _YSIEKPLKF_ 0 0 0 ENST00000469317.1_1_3:123247245-123301172:-|nuORF;ENSG00000206527|ENST00000383657|HACD2 ENST00000469317.1_1_3:123247245-123301172:-|nuORF ENST00000469317.1_1_3:123247245-123301172:-|nuORF MSMS UPN48_class_I_Rep_1 5 562.82080078125 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 47.822 1 51.343 50.843 51.843 3.5219 0 0 0 0.10979 1 9491 9491 22.658 10.417 1 57810 5571 36484 36503 66377 66377 0.07087773171224399 YSIEKPLKF 9 Unmodified _YSIEKPLKF_ 0 0 0 ENST00000469317.1_1_3:123247245-123301172:-|nuORF;ENSG00000206527|ENST00000383657|HACD2 ENST00000469317.1_1_3:123247245-123301172:-|nuORF ENST00000469317.1_1_3:123247245-123301172:-|nuORF MSMS UPN48_class_I_Rep_1 5 562.8223266601562 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 48.016 1 51.538 51.038 52.038 3.5219 0 0 0 0.3377 1 9551 9551 8.7454 2.0222 1 57811 5571 36484 36503 66378 66378 0.07087773171224399 YSIEKPLKF 9 Unmodified _YSIEKPLKF_ 0 0 0 ENST00000469317.1_1_3:123247245-123301172:-|nuORF;ENSG00000206527|ENST00000383657|HACD2 ENST00000469317.1_1_3:123247245-123301172:-|nuORF ENST00000469317.1_1_3:123247245-123301172:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 562.8207397460938 2 562.82115 1123.62775 0.39337 0.00022139 0.16321 9.1859E-05 0.55658 0.00031325 562.8210773427735 47.421 0.23932 51.157 51.089 51.329 3.7361 24 20 2 0 0 0 0.13455 2 9377 9373;9377 27.223 11.074 1 210380 57812 5571 36484 36503 66379;66380 66380 0.07087773171224399 YSIEKPLKF 9 Unmodified _YSIEKPLKF_ 0 0 0 ENST00000469317.1_1_3:123247245-123301172:-|nuORF;ENSG00000206527|ENST00000383657|HACD2 ENST00000469317.1_1_3:123247245-123301172:-|nuORF ENST00000469317.1_1_3:123247245-123301172:-|nuORF MSMS UPN48_class_I_Rep_2 6 562.8204956054688 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 47.664 1 51.4 50.9 51.9 3.7361 0 0 0 0.38916 1 9439 9439 3.2813 0.28607 1 57813 5571 36484 36503 66381 66381 0.07087773171224399 YSIEKPLKF 9 Unmodified _YSIEKPLKF_ 0 0 0 ENST00000469317.1_1_3:123247245-123301172:-|nuORF;ENSG00000206527|ENST00000383657|HACD2 ENST00000469317.1_1_3:123247245-123301172:-|nuORF ENST00000469317.1_1_3:123247245-123301172:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 563.323486328125 2 562.82115 1123.62775 0.35063 0.00019734 0.25263 0.00014218 0.60325 0.00033952 562.8211100930505 47.713 0.41123 51.346 51.177 51.588 3.6339 43 29 2 0 0 0 0.13455 1 9390 9390 27.223 17.073 1 143750 57814 5571 36484 36503 66382 66382 0.07087773171224399 YSIFLILICL 10 Unmodified _YSIFLILICL_ 0 0 0 nc|ENSG00000158488|P15812-12|CD1E;nc|ENSG00000158488|P15812-11|CD1E;nc|ENSG00000158488|P15812-9|CD1E;nc|ENSG00000158488|P15812-8|CD1E;nc|ENSG00000158488|P15812-7|CD1E;nc|ENSG00000158488|P15812-6|CD1E;nc|ENSG00000158488|P15812-13|CD1E;nc|ENSG00000158488|P15812-5|CD1E;nc|ENSG00000158488|P15812-4|CD1E;nc|ENSG00000158488|P15812-2|CD1E;ENSG00000158488|ENST00000368167|CD1E nc|ENSG00000158488|P15812-12|CD1E nc|ENSG00000158488|P15812-12|CD1E MSMS UPN46_class_I_Rep_3 1 599.3515014648438 2 599.351228 1196.6879 NaN NaN NaN NaN NaN NaN NaN 21.835 1 21.835 21.335 22.335 0 0 0 0 0.53105 1 2502 2502 0 0 1 57815 3801 36485 36504 66383 66383 0.09742747510131267 YSILEELW 8 Unmodified _YSILEELW_ 0 0 0 ZNF484|p.A197Efs*18|1|0.03|ENSG00000127081|chr9:92848197-92848197|G/-|frameshift_variant;ZNF81|p.N274Kfs*5|1|0.1|ENSG00000197779|chrX:47915464-47915465|-/A|frameshift_variant;ENSG00000197779|ENST00000338637|ZNF81;nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484 ZNF484|p.A197Efs*18|1|0.03|ENSG00000127081|chr9:92848197-92848197|G/-|frameshift_variant ZNF484|p.A197Efs*18|1|0.03|ENSG00000127081|chr9:92848197-92848197|G/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_1 5 526.7682495117188 2 526.768583 1051.52261 0.31779 0.0001674 -0.069262 -3.6485E-05 0.24853 0.00013092 526.7684610927171 84.681 0.19534 88.278 88.135 88.33 3.5973 55 26 3 0 0 0 0.82752 2 20245 20245;20253 23.148 2.6948 1 243510 57816 2562 36486 36505 66384;66385 66384 -0.0010876802521124773 YSILEELW 8 Unmodified _YSILEELW_ 0 0 0 ZNF484|p.A197Efs*18|1|0.03|ENSG00000127081|chr9:92848197-92848197|G/-|frameshift_variant;ZNF81|p.N274Kfs*5|1|0.1|ENSG00000197779|chrX:47915464-47915465|-/A|frameshift_variant;ENSG00000197779|ENST00000338637|ZNF81;nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484 ZNF484|p.A197Efs*18|1|0.03|ENSG00000127081|chr9:92848197-92848197|G/-|frameshift_variant ZNF484|p.A197Efs*18|1|0.03|ENSG00000127081|chr9:92848197-92848197|G/-|frameshift_variant MULTI-MSMS UPN48_class_I_Rep_2 6 526.768798828125 2 526.768583 1051.52261 0.39985 0.00021063 0.080888 4.2609E-05 0.48074 0.00025324 526.7686974734145 84.675 0.39714 88.369 88.12 88.517 3.6937 82 53 2 0 0 0 0.82752 1 20135 20135 36.044 3.7387 1 351410 57817 2562 36486 36505 66386 66386 -0.0010876802521124773 YSILGWKYF 9 Unmodified _YSILGWKYF_ 0 0 0 L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|217|3|anti-sense L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|217|3|anti-sense L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|217|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 588.7548828125 2 588.808042 1175.60153 0.52044 0.00030644 -2.1597 -0.0012716 -1.6392 -0.00096518 588.8063917659466 64.126 0.10836 67.6 67.523 67.632 3.4743 7 5 2 0 0 0 0.11884 1 14456 14456 9.3831 0 1 33913 57818 9900 36487 36506 66387 66387 0.020755039997538915 YSILGWKYF 9 Unmodified _YSILGWKYF_ 0 0 0 L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|217|3|anti-sense L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|217|3|anti-sense L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|217|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_1 5 2 588.808042 1175.60153 0.5278 0.00031077 -4.3258 -0.0025471 -3.798 -0.0022363 588.8048002218234 64.212 0.039772 67.67 67.654 67.694 3.4578 0.034896 -0.0018177 NaN 9.3831 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 82535 57819 9900 36487 36506 0.020755039997538915 YSILLFFLK 9 Unmodified _YSILLFFLK_ 0 0 0 Tigger19a_dup608|chr2:157417009-157417130:+|1.002403934855319|0.1973278378845771|2.34|151.0|8|1|anti-sense Tigger19a_dup608|chr2:157417009-157417130:+|1.002403934855319|0.1973278378845771|2.34|151.0|8|1|anti-sense Tigger19a_dup608|chr2:157417009-157417130:+|1.002403934855319|0.1973278378845771|2.34|151.0|8|1|anti-sense MSMS UPN48_class_I_Rep_1 5 572.3466186523438 2 572.344261 1142.67397 NaN NaN NaN NaN NaN NaN NaN 68.479 1 71.93 71.43 72.43 3.4517 0 0 0 0.38639 1 15815 15815 3.9444 0 1 57820 33264 36488 36507 66388 66388 0.10833838073313018 YSIRDLQLF 9 Unmodified _YSIRDLQLF_ 0 0 0 REV__L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|105|3|anti-sense REV__L1PA6_dup3186|chr8:99063098-99065200:+|1.1627507993626758|0.023155804917494|5.65|151.0|105|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 577.2821044921875 2 577.813856 1153.61316 0.47252 0.00027303 -0.32827 -0.00018968 0.14425 8.3349E-05 577.8135011848416 76.43 0.081337 80.031 79.997 80.078 3.6011 11 8 2 0 0 0 0.12281 1 18044 18044 4.3292 0 1 110510 + 57821 29873 36489 36508 66389 66389 0.04249701023081798 YSIWSYASLL 10 Unmodified _YSIWSYASLL_ 0 0 0 REV__LTR33_dup3467|chr6:42322587-42323015:-|1.0067487401797952|0.0083193149032422|6.92|151.0|16|2|anti-sense REV__LTR33_dup3467|chr6:42322587-42323015:-|1.0067487401797952|0.0083193149032422|6.92|151.0|16|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 601.8104858398438 2 601.808239 1201.60193 0.47996 0.00028884 1.151 0.00069267 1.6309 0.00098151 601.8090247312472 74.799 0.098335 78.389 78.344 78.443 3.59 13 11 2 0 0 0 0.56078 1 17620 17620 3.2813 0 1 57205 + 57822 30901 36490 36509 66390 66390 0.009188789289510169 YSIYHSQNL 9 Unmodified _YSIYHSQNL_ 0 0 0 Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|63|3|sense Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|63|3|sense Tigger1_dup8169|chr10:75686715-75689128:+|1.6098320284750391|0.0387967049795239|5.37|148.0|63|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 563.2487182617188 2 562.772188 1123.52982 0.48354 0.00027212 3.6621 0.0020609 4.1457 0.0023331 563.2756444648054 71.328 0.062744 74.794 74.763 74.825 3.466 5 3 2 0 0 0 0.46434 1 16664 16664 4.3292 0.73274 1 43758 57823 33189 36491 36510 66391 66391 -0.027000354247547875 YSKAASDPFV 10 Unmodified _YSKAASDPFV_ 0 0 0 ENSG00000154478|ENST00000284674|GPR26 ENSG00000154478|ENST00000284674|GPR26 ENSG00000154478|ENST00000284674|GPR26 MULTI-MSMS UPN46_class_I_Rep_3 1 542.7688598632812 2 542.769114 1083.52368 0.3726 0.00020224 1.076 0.00058404 1.4486 0.00078628 542.7695104057657 93.656 0.1757 93.656 93.58 93.756 0 20 16 2 0 0 0 0.56374 1 22704 22704 1.1933 0 1 276130 57824 3673 36492 36511 66392 66392 -0.014745536562941197 YSKDQFRN 8 Unmodified _YSKDQFRN_ 0 0 0 REV__L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|72|3|sense REV__L1MA3_dup3504|chr6:73098014-73100384:+|2.052939913619606|0.0083475488510078|7.94|149.0|72|3|sense MSMS UPN47_class_I_Rep_1 2 529.2564697265625 2 529.256705 1056.49886 NaN NaN NaN NaN NaN NaN NaN 22.717 1 26.421 25.921 26.921 3.7042 0 0 0 0.40746 1 2687 2687 0.69038 0 1 + 57825 25023 36493 36512 66393 66393 -0.027131887389941767 YSKFAGYK 8 Unmodified _YSKFAGYK_ 0 0 0 L1MC1_dup4880|chr5:171880997-171882318:-|1.013658892309962|0.0455396902660757|4.48|150.0|32|2|sense L1MC1_dup4880|chr5:171880997-171882318:-|1.013658892309962|0.0455396902660757|4.48|150.0|32|2|sense L1MC1_dup4880|chr5:171880997-171882318:-|1.013658892309962|0.0455396902660757|4.48|150.0|32|2|sense MSMS UPN48_class_I_Rep_1 5 481.8347473144531 2 482.25036 962.486168 NaN NaN NaN NaN NaN NaN NaN 70.595 1 74.055 73.555 74.555 3.4598 0 0 0 0.40604 1 16462 16462 2.5775 0 1 57826 11157 36494 36513 66394 66394 0.003423998687594576 YSKGIIIEPA 10 Unmodified _YSKGIIIEPA_ 0 0 0 REV__ENSG00000112739|ENST00000337659|PRPF4B REV__ENSG00000112739|ENST00000337659|PRPF4B MULTI-MSMS UPN47_class_I_Rep_3 4 545.8106079101562 2 545.810782 1089.60701 0.47099 0.00025707 -0.71549 -0.00039052 -0.2445 -0.00013345 545.8101747581306 85.526 0.39738 88.897 88.78 89.177 3.3716 84 51 2 0 0 0 0.47413 3 21448 21412;21417;21448 13.906 0 1 219810 + 57827 18488 36495 36514 66395;66396;66397 66397 0.0657918279155183 YSKIEQII 8 Unmodified _YSKIEQII_ 0 0 0 L1PA14_dup2461|chr12:46636908-46643375:+|3.6611702218720006|0.1377180874454446|4.73|151.0|105|2|sense L1PA14_dup2461|chr12:46636908-46643375:+|3.6611702218720006|0.1377180874454446|4.73|151.0|105|2|sense L1PA14_dup2461|chr12:46636908-46643375:+|3.6611702218720006|0.1377180874454446|4.73|151.0|105|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 497.7455749511719 2 497.2844 992.554247 0.18553 9.2263E-05 0.18522 9.2106E-05 0.37075 0.00018437 497.28427771932195 61.09 0.18863 64.471 64.416 64.605 3.3815 14 12 2 0 0 0 0.72333 1 14301 14301 10.824 0 1 55137 57828 13842 36496 36515 66398 66398 0.057672247287769096 YSKIERAYK 9 Unmodified _YSKIERAYK_ 0 0 0 REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|68|2|sense REV__L1MA4_dup7938|chr13:33896742-33901831:+|4.192994724404612|0.125155516896529|5.07|151.0|68|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 579.806396484375 2 579.319306 1156.62406 0.4275 0.00024766 -0.4746 -0.00027495 -0.047105 -2.7289E-05 579.3190658131027 40.033 0.79583 43.774 43.409 44.205 3.7413 141 83 2 0 0 0 0.19147 1 7214 7214 21.537 6.2885 1 230800 + 57829 25213 36497 36516 66399 66399 0.05201103397371298 YSKKKKKKRK 10 Unmodified _YSKKKKKKRK_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_1 5 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 23.091 1 26.651 26.151 27.151 3.5605 0 0 0 0.53105 1 2354 2354 0.15932 0 1 57830 9406 36498 36517 66400 66400 0.22417277055819795 YSKKKKKKRK 10 Unmodified _YSKKKKKKRK_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_2 6 441.2978210449219 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.912 1 82.545 82.045 83.045 3.6331 0 0 0 0.53105 1 18730 18730 0.13989 0 1 57831 9406 36498 36517 66401 66401 0.22417277055819795 YSKKKKKKRK 10 Unmodified _YSKKKKKKRK_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_2 6 441.29754638671875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 79.286 1 82.919 82.419 83.419 3.6331 0 0 0 0.53105 1 18830 18830 0.13989 0 1 57832 9406 36498 36517 66402 66402 0.22417277055819795 YSKKKKKKRK 10 Unmodified _YSKKKKKKRK_ 0 0 0 L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense L1MA2_dup5702|chr11:129003096-129008317:-|2.5376041210690925|0.1372398995123356|4.21|151.0|42|1|sense MSMS UPN48_class_I_Rep_3 7 441.29730224609375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 78.97 1 82.591 82.091 83.091 3.6216 0 0 0 0.53105 1 18711 18711 0.13989 0 1 57833 9406 36498 36517 66403 66403 0.22417277055819795 YSKKRKHKSQ 10 Unmodified _YSKKRKHKSQ_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MSMS UPN48_class_I_Rep_3 7 645.3780517578125 2 645.375478 1288.7364 NaN NaN NaN NaN NaN NaN NaN 101.61 1 105.42 104.92 105.92 3.8153 0 0 0 0.53105 1 24024 24024 3.5965 1.9439 1 + 57834 20173 36499 36518 66404 66404 0.10358377194211243 YSKKRKHKSQ 10 Unmodified _YSKKRKHKSQ_ 0 0 0 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 REV__nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MSMS UPN48_class_I_Rep_3 7 645.3784790039062 2 645.375478 1288.7364 NaN NaN NaN NaN NaN NaN NaN 102.02 1 105.79 105.29 106.29 3.776 0 0 0 0.53105 1 24113 24113 3.5965 1.9439 1 + 57835 20173 36499 36518 66405 66405 0.10358377194211243 YSKNLETI 8 Unmodified _YSKNLETI_ 0 0 0 L1ME4a_dup14660|chr7:37072993-37073527:+|1.0199881587220836|0.0093742771201557|6.77|151.0|12|2|sense L1ME4a_dup14660|chr7:37072993-37073527:+|1.0199881587220836|0.0093742771201557|6.77|151.0|12|2|sense L1ME4a_dup14660|chr7:37072993-37073527:+|1.0199881587220836|0.0093742771201557|6.77|151.0|12|2|sense MSMS UPN47_class_I_Rep_2 3 484.2583923339844 2 484.258382 966.502212 NaN NaN NaN NaN NaN NaN NaN 19.676 1 23.072 22.572 23.572 3.3963 0 0 0 0.40746 1 1900 1900 0.69038 0 1 57836 12854 36500 36519 66406 66406 0.017620613150143072 YSKPPPLY 8 Unmodified _YSKPPPLY_ 0 0 0 REV__MLT1C_dup11823|chr10:26554882-26555045:-|2.1151822724523983|0.0136603060121395|7.27|151.0|1|1|sense REV__MLT1C_dup11823|chr10:26554882-26555045:-|2.1151822724523983|0.0136603060121395|7.27|151.0|1|1|sense MSMS UPN47_class_I_Rep_3 4 482.75811767578125 2 482.760561 963.506569 NaN NaN NaN NaN NaN NaN NaN 42.426 1 45.665 45.165 46.165 3.2394 0 0 0 0.388 1 8703 8703 12.532 3.1841 1 + 57837 31632 36501 36520 66407 66407 0.023355705285553086 YSKPPTPPL 9 Unmodified _YSKPPTPPL_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MSMS UPN48_class_I_Rep_3 7 500.28082275390625 2 500.279118 998.543683 NaN NaN NaN NaN NaN NaN NaN 46.181 1 49.818 49.318 50.318 3.6369 0 0 0 0.39518 1 8926 8926 1.8442 1.0506 1 57838 3623 36502 36521 66408 66408 0.04435242074339385 YSKQLDLMI 9 Unmodified _YSKQLDLMI_ 0 0 0 REV__L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|53|1|anti-sense REV__L1MC4a_dup8329|chr15:63829601-63830741:+|1.112108091038304|0.0146223645689714|6.25|151.0|53|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.329345703125 2 555.796817 1109.57908 NaN NaN NaN NaN NaN NaN NaN 40.799 1 44.547 44.047 45.047 3.7483 0 0 0 0.38639 1 7385 7385 3.9444 0 1 + 57839 27028 36503 36522 66409 66409 0.028675365398157737 YSKQLHLII 9 Unmodified _YSKQLHLII_ 0 0 0 REV__L1MD3_dup3663|chr12:115947365-115948023:+|1.0169917282977778|0.0497668950108195|4.35|151.0|34|3|anti-sense REV__L1MD3_dup3663|chr12:115947365-115948023:+|1.0169917282977778|0.0497668950108195|4.35|151.0|34|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.8350219726562 2 557.834591 1113.65463 0.32127 0.00017921 -0.3781 -0.00021092 -0.05683 -3.1702E-05 557.8344304059273 48.372 0.71856 52.005 51.781 52.5 3.6339 124 54 3 0 0 0 0.31407 1 9674 9674 13.042 0.80181 1 224510 + 57840 27478 36504 36523 66410 66410 0.10234881782434968 YSKRRKINMP 10 Unmodified _YSKRRKINMP_ 0 0 0 REV__L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|12|1|sense REV__L1MEf_dup693|chr1:219186100-219187220:-|1.5410267553065258|0.1279741241320275|3.59|150.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 646.8676147460938 2 646.866431 1291.71831 NaN NaN NaN NaN NaN NaN NaN 48.261 1 51.895 51.395 52.395 3.6339 0 0 0 0.53105 1 9562 9562 3.5965 0 1 + 57841 28678 36505 36524 66411 66411 0.08411918947876984 YSKWIVSID 9 Unmodified _YSKWIVSID_ 0 0 0 L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|307|2|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|307|2|anti-sense L1MD2_dup7104|chr10:31486658-31491759:-|1.3846907076667332|0.2592525786187401|2.42|151.0|307|2|anti-sense MSMS UPN48_class_I_Rep_1 5 555.7964477539062 2 555.795132 1109.57571 NaN NaN NaN NaN NaN NaN NaN 41.277 1 44.783 44.283 45.283 3.506 0 0 0 0.38478 1 7504 7504 4.3292 0.38484 1 57842 12020 36506 36525 66412 66412 0.025306097574684827 YSLALFRM 8 Unmodified _YSLALFRM_ 0 0 0 L1ME1_dup30543|chr22:23210498-23210856:-|1.8057257364829065|0.010740177007137|7.39|151.0|12|1|anti-sense L1ME1_dup30543|chr22:23210498-23210856:-|1.8057257364829065|0.010740177007137|7.39|151.0|12|1|anti-sense L1ME1_dup30543|chr22:23210498-23210856:-|1.8057257364829065|0.010740177007137|7.39|151.0|12|1|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7667236328125 2 500.767863 999.521173 NaN NaN NaN NaN NaN NaN NaN 40.819 1 44.569 44.069 45.069 3.7508 0 0 0 0.40604 1 7391 7391 2.5775 0.27475 1 57843 12389 36507 36526 66413 66413 0.021393194050574493 YSLDHISSLF 10 Unmodified _YSLDHISSLF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-SECPEP UPN48_class_I_Rep_2 6 591.2953491210938 2 591.295496 1180.57644 0.47555 0.00028119 0.23076 0.00013645 0.7063 0.00041763 591.2955456084982 72.317 0.60074 75.882 75.597 76.198 3.5645 110 57 3 0 0 0 0.84575 1 16983 16983 18.146 4.2403 1 395070 57844 834 36508 36527 66414 66414 -0.006625955934623562 YSLDHISSLF 10 Unmodified _YSLDHISSLF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS UPN48_class_I_Rep_3 7 591.2958374023438 2 591.295496 1180.57644 0.56831 0.00033604 0.036374 2.1508E-05 0.60468 0.00035754 591.2953944380603 72.385 0.78665 75.911 75.593 76.38 3.5266 143 70 3 0 0 0 0.17566 3 16844 16844;16949;16954 62.573 12.64 1 432990 57845 834 36508 36527 66415;66416;66417 66415 -0.006625955934623562 YSLDHISSLF 10 Unmodified _YSLDHISSLF_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH UPN48_class_I_Rep_1 5 2 591.295496 1180.57644 0.45243 0.00026752 0.03846 2.2741E-05 0.49089 0.00029026 591.2955007285542 72.587 0.84135 76.06 75.667 76.508 3.4732 0.10894 -7.257E-05 NaN 62.573 132 65 3 NaN NaN NaN NaN 0 NaN NaN 0 475130 57846 834 36508 36527 -0.006625955934623562 YSLEHTVQF 9 Unmodified _YSLEHTVQF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS UPN48_class_I_Rep_1 5 562.7758178710938 2 562.274564 1122.53457 0.46457 0.00026122 -0.19686 -0.00011069 0.26772 0.00015053 562.2743384801994 52.738 0.67104 56.257 55.94 56.611 3.5192 117 53 3 0 0 0 0.025281 2 10936 10936;10983 60.074 30.992 1 347060 57847 1181 36509 36528 66418;66419 66418 -0.021791512820072967 YSLEHTVQF 9 Unmodified _YSLEHTVQF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS UPN48_class_I_Rep_2 6 562.2747802734375 2 562.274564 1122.53457 0.5356 0.00030116 -0.30502 -0.00017151 0.23058 0.00012965 562.2742687385677 52.687 0.68223 56.319 55.965 56.647 3.6322 102 45 3 0 0 0 0.035561 6 10976 10871;10889;10932;10976;11023;11055 54.774 18.647 1 318900 57848 1181 36509 36528 66420;66421;66422;66423;66424;66425 66423 -0.021791512820072967 YSLEHTVQF 9 Unmodified _YSLEHTVQF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS UPN48_class_I_Rep_3 7 562.2747192382812 2 562.274564 1122.53457 0.29183 0.00016409 -0.11285 -6.3451E-05 0.17898 0.00010064 562.274440531225 52.679 0.74242 56.276 55.946 56.689 3.5979 115 52 3 0 0 0 0.032038 2 10883 10840;10883 56.177 27.095 1 337260 57849 1181 36509 36528 66426;66427 66427 -0.021791512820072967 YSLESLLQR 9 Unmodified _YSLESLLQR_ 0 0 0 REV__ENST00000533454.5_2_11:75672590-75724017:+|nuORF REV__ENST00000533454.5_2_11:75672590-75724017:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 555.3065185546875 2 554.803488 1107.59242 0.49397 0.00027405 -0.22666 -0.00012575 0.26731 0.0001483 554.803241157819 44.142 0.52983 47.656 47.352 47.881 3.5132 75 39 2 0 0 0 0.35081 1 8295 8295 10.824 0 1 160230 + 57850 21123 36510 36529 66428 66428 0.0429311064342528 YSLFLVMAL 9 Unmodified _YSLFLVMAL_ 0 0 0 L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|118|2|anti-sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|118|2|anti-sense L1MDa_dup153|chr1:113845501-113847581:-|3.966267740361334|0.1190095581949081|5.06|151.0|118|2|anti-sense MSMS UPN48_class_I_Rep_1 5 528.793701171875 2 528.793546 1055.57254 NaN NaN NaN NaN NaN NaN NaN 31.529 1 35.063 34.563 35.563 3.5342 0 0 0 0.38478 1 4676 4676 4.3292 0 1 57851 12098 36511 36530 66429 66429 0.0469764337910874 YSLIFVNSY 9 Unmodified _YSLIFVNSY_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS UPN48_class_I_Rep_1 5 553.8307495117188 2 553.281857 1104.54916 0.52709 0.00029163 -0.070127 -3.88E-05 0.45696 0.00025283 553.2817624894712 78.857 0.23389 82.392 82.315 82.549 3.5352 34 26 2 0 0 0 0.20317 2 18818 18801;18818 20.415 6.5085 1 85610 57852 1890 36512 36531 66430;66431 66431 0.001069208661419907 YSLIFVNSY 9 Unmodified _YSLIFVNSY_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS UPN48_class_I_Rep_2 6 553.2823486328125 2 553.281857 1104.54916 0.48876 0.00027042 -0.12534 -6.9346E-05 0.36342 0.00020107 553.2817923105875 78.749 0.40553 82.382 82.185 82.591 3.6331 53 47 2 0 0 0 0.26468 2 18684 18652;18684 16.149 6.766 1 87615 57853 1890 36512 36531 66432;66433 66433 0.001069208661419907 YSLIFVNSY 9 Unmodified _YSLIFVNSY_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS UPN48_class_I_Rep_3 7 553.2820434570312 2 553.281857 1104.54916 0.42367 0.00023441 -0.053064 -2.9359E-05 0.37061 0.00020505 553.2817400021268 78.854 0.2511 82.475 82.306 82.557 3.6215 42 29 2 0 0 0 0.26468 2 18651 18651;18664 16.149 6.766 1 97498 57854 1890 36512 36531 66434;66435 66434 0.001069208661419907 YSLIFVNSY 9 Unmodified _YSLIFVNSY_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MSMS UPN48_class_I_Rep_3 7 553.2811279296875 2 553.281857 1104.54916 NaN NaN NaN NaN NaN NaN NaN 78.643 1 82.264 81.764 82.764 3.6216 0 0 0 0.34878 1 18620 18620 8.1555 2.8586 1 57855 1890 36512 36531 66436 66436 0.001069208661419907 YSLIHCCVW 9 Unmodified _YSLIHCCVW_ 0 0 0 L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|44|1|anti-sense L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|44|1|anti-sense L1ME5_dup452|chr2:148181843-148182707:-|1.035540960623555|0.0173308196579785|5.9|151.0|44|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 562.7764282226562 2 562.256805 1122.49906 0.46675 0.00026244 -0.36686 -0.00020627 0.099894 5.6166E-05 562.2565003106473 52.978 0.41189 56.497 56.322 56.734 3.5192 43 28 2 0 0 0 0.25207 1 11105 11105 16.942 0.79319 1 100340 57856 12970 36513 36532 66437 66437 -0.057292283350307116 YSLIRKIE 8 Unmodified _YSLIRKIE_ 0 0 0 REV__ENST00000307296.7_1_3:33908633-33908810:+|nuORF REV__ENST00000307296.7_1_3:33908633-33908810:+|nuORF MSMS UPN46_class_I_Rep_3 1 511.3035583496094 2 511.305667 1020.59678 NaN NaN NaN NaN NaN NaN NaN 100.61 1 100.61 100.11 101.11 0 0 0 0 0.40643 1 24528 24528 2.0598 0 1 + 57857 21691 36514 36533 66438 66438 0.08730619856987687 YSLKAIRITF 10 Unmodified _YSLKAIRITF_ 0 0 0 REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|251|1|anti-sense REV__L1MA1_dup2348|chrX:65079169-65085415:+|1.0884915960532482|0.2023225565684357|2.43|150.0|251|1|anti-sense MSMS UPN46_class_I_Rep_3 1 606.3611450195312 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 33.388 1 33.388 32.888 33.888 0 0 0 0 0.53105 1 5833 5833 0 0 1 + 57858 24779 36515 36534 66439 66439 0.1104683984519852 YSLKVLLSY 9 Unmodified _YSLKVLLSY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN48_class_I_Rep_1 5 543.3163452148438 2 543.3157 1084.61685 0.45683 0.0002482 -0.17986 -9.7723E-05 0.27697 0.00015048 543.3154513586776 69.272 0.79713 72.727 72.256 73.053 3.4548 130 60 3 0 0 0 0.0085073 3 16043 16000;16043;16125 70.929 13.68 1 437110 57859 1929 36516 36535 66440;66441;66442 66441 0.07792370796960313 YSLKVLLSY 9 Unmodified _YSLKVLLSY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN48_class_I_Rep_2 6 543.3157348632812 2 543.3157 1084.61685 0.48535 0.0002637 -0.18993 -0.00010319 0.29542 0.00016051 543.3154398600395 68.99 0.86816 72.512 72.118 72.986 3.5216 143 64 3 0 0 0 0.0061843 3 15954 15916;15954;15996 75.571 11.61 1 406910 57860 1929 36516 36535 66443;66444;66445 66444 0.07792370796960313 YSLKVLLSY 9 Unmodified _YSLKVLLSY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN48_class_I_Rep_3 7 543.3157958984375 2 543.3157 1084.61685 0.56682 0.00030796 -0.25983 -0.00014117 0.30698 0.00016679 543.3153913403539 69.024 0.84769 72.533 72.037 72.885 3.5094 145 60 3 0 0 0 0.0085073 3 15831 15831;15870;15913 70.929 21.374 1 361510 57861 1929 36516 36535 66446;66447;66448 66446 0.07792370796960313 YSLLGLYKE 9 Unmodified _YSLLGLYKE_ 0 0 0 REV__LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|150|3|anti-sense REV__LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|150|3|anti-sense MSMS UPN48_class_I_Rep_2 6 543.2986450195312 2 543.297507 1084.58046 NaN NaN NaN NaN NaN NaN NaN 29.619 1 33.251 32.751 33.751 3.6316 0 0 0 0.3967 1 4232 4232 1.4819 0 1 + 57862 30946 36517 36536 66449 66449 0.04155493900248075 YSLLINLK 8 Unmodified _YSLLINLK_ 0 0 0 REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|22|3|sense REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 482.2968444824219 2 482.29731 962.580068 -0.23793 -0.00011475 -0.043784 -2.1117E-05 -0.28172 -0.00013587 482.2972180898943 42.101 0.63618 45.78 45.404 46.04 3.6792 74 43 2 0 0 0 0.82752 1 8571 8571 0.79363 0 1 100300 + 57863 26573 36518 36537 66450 66450 0.09728118971020194 YSLLINLK 8 Unmodified _YSLLINLK_ 0 0 0 REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|22|3|sense REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 482.2969665527344 2 482.29731 962.580068 -0.1516 -7.3117E-05 -0.051816 -2.499E-05 -0.20342 -9.8108E-05 482.2971905976295 42.687 0.75636 46.048 45.503 46.259 3.3611 82 53 2 0 0 0 0.82752 1 8739 8739 2.5775 0 1 85229 + 57864 26573 36518 36537 66451 66451 0.09728118971020194 YSLLINLK 8 Unmodified _YSLLINLK_ 0 0 0 REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|22|3|sense REV__L1MC1_dup5122|chr6:37833845-37834666:-|2.970705082206941|0.0190613732438707|7.28|151.0|22|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 482.2970275878906 2 482.29731 962.580068 -0.22957 -0.00011072 -0.05147 -2.4824E-05 -0.28104 -0.00013554 482.2972847325717 42.876 0.70886 46.116 45.664 46.373 3.2394 63 46 2 0 0 0 0.82752 1 8772 8772 0.79363 0 1 94832 + 57865 26573 36518 36537 66452 66452 0.09728118971020194 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 485.28564453125 2 485.286411 968.55827 0.15366 7.4571E-05 -1.354 -0.00065709 -1.2004 -0.00058252 485.2855799024371 52.078 0.29593 55.6 55.552 55.848 3.5227 71 32 3 0 0 0 0.82752 1 10806 10806 2.5775 0 1 253810 57866 5605 36519 36538 66453 66453 0.0727331422244788 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.285888671875 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 44.778 1 48.291 47.791 48.791 3.5132 0 0 0 0.40604 1 8563 8563 2.5775 0 1 57867 5605 36519 36538 66454 66454 0.0727331422244788 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.28558349609375 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 51.372 1 54.897 54.397 55.397 3.5246 0 0 0 0.40604 1 10589 10589 2.5775 0 1 57868 5605 36519 36538 66455 66455 0.0727331422244788 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.2860412597656 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 51.557 1 55.08 54.58 55.58 3.5227 0 0 0 0.40604 1 10646 10646 2.5775 0 1 57869 5605 36519 36538 66456 66456 0.0727331422244788 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.286376953125 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 51.809 1 55.331 54.831 55.831 3.5227 0 0 0 0.40604 1 10722 10722 2.5775 0 1 57870 5605 36519 36538 66457 66457 0.0727331422244788 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MSMS UPN48_class_I_Rep_1 5 485.28582763671875 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 51.974 1 55.497 54.997 55.997 3.5227 0 0 0 0.40604 1 10771 10771 2.5775 0 1 57871 5605 36519 36538 66458 66458 0.0727331422244788 YSLLLTFI 8 Unmodified _YSLLLTFI_ 0 0 0 ENST00000560542.1_1_14:24633743-24634393:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9 ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000560542.1_1_14:24633743-24634393:+|nuORF MSMS UPN48_class_I_Rep_2 6 485.28497314453125 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 51.194 1 54.862 54.362 55.362 3.6679 0 0 0 0.40604 1 10528 10528 2.5775 0 1 57872 5605 36519 36538 66459 66459 0.0727331422244788 YSLLMIKMQ 9 Unmodified _YSLLMIKMQ_ 0 0 0 REV__HAL1_dup16894|chr12:82988196-82989245:+|1.0759679392637618|0.0146789418096583|6.2|145.0|64|3|anti-sense REV__HAL1_dup16894|chr12:82988196-82989245:+|1.0759679392637618|0.0146789418096583|6.2|145.0|64|3|anti-sense MSMS UPN48_class_I_Rep_3 7 563.8033447265625 2 563.803588 1125.59262 NaN NaN NaN NaN NaN NaN NaN 35.709 1 39.376 38.876 39.876 3.6667 0 0 0 0.38299 1 5826 5826 4.756 0 1 + 57873 23370 36520 36539 66460 66460 0.034850710474302105 YSLLPRYL 8 Unmodified _YSLLPRYL_ 0 0 0 ENST00000358933.9_1_16:67912498-67912681:+|nuORF ENST00000358933.9_1_16:67912498-67912681:+|nuORF ENST00000358933.9_1_16:67912498-67912681:+|nuORF MSMS UPN48_class_I_Rep_2 6 512.7941284179688 2 512.794935 1023.57532 NaN NaN NaN NaN NaN NaN NaN 43.295 1 47.057 46.557 47.557 3.7617 0 0 0 0.40404 1 8120 8120 5.2307 0 1 57874 6303 36521 36540 66461 66461 0.06447234828260662 YSLLPRYL 8 Unmodified _YSLLPRYL_ 0 0 0 ENST00000358933.9_1_16:67912498-67912681:+|nuORF ENST00000358933.9_1_16:67912498-67912681:+|nuORF ENST00000358933.9_1_16:67912498-67912681:+|nuORF MSMS UPN48_class_I_Rep_3 7 512.7938232421875 2 512.794935 1023.57532 NaN NaN NaN NaN NaN NaN NaN 42.858 1 46.5 46 47 3.6415 0 0 0 0.40404 1 7905 7905 5.2307 0 1 57875 6303 36521 36540 66462 66462 0.06447234828260662 YSLLVKDKK 9 Unmodified _YSLLVKDKK_ 0 0 0 REV__nc|ENSG00000137033|O95760-3|IL33 REV__nc|ENSG00000137033|O95760-3|IL33 MSMS UPN48_class_I_Rep_3 7 547.3327026367188 2 547.334424 1092.6543 NaN NaN NaN NaN NaN NaN NaN 72.255 1 75.781 75.281 76.281 3.5266 0 0 0 0.38478 1 16831 16831 4.3292 0 1 + 57876 19209 36522 36541 66463 66463 0.11167462062553568 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN48_class_I_Rep_1 5 543.3154296875 2 543.3157 1084.61685 0.45683 0.0002482 -0.17986 -9.7723E-05 0.27697 0.00015048 543.3154513586776 69.272 0.79713 72.727 72.256 73.053 3.4548 130 60 3 0 0 0 0.12795 2 16086 15964;16086 28.495 3.5035 1 437110 + 57877 18426 36523 36542 66464;66465 66465 0.07792370796960313 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN48_class_I_Rep_2 6 543.3157958984375 2 543.3157 1084.61685 0.48535 0.0002637 -0.18993 -0.00010319 0.29542 0.00016051 543.3154398600395 68.99 0.86816 72.512 72.118 72.986 3.5216 143 64 3 0 0 0 0.12795 3 16035 15877;16035;16081 28.495 0 1 406910 + 57878 18426 36523 36542 66466;66467;66468 66467 0.07792370796960313 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS UPN48_class_I_Rep_3 7 543.3153076171875 2 543.3157 1084.61685 0.56682 0.00030796 -0.25983 -0.00014117 0.30698 0.00016679 543.3153913403539 69.024 0.84769 72.533 72.037 72.885 3.5094 145 60 3 0 0 0 0.26468 1 15751 15751 16.149 0 1 361510 + 57879 18426 36523 36542 66469 66469 0.07792370796960313 YSLLVKLSY 9 Unmodified _YSLLVKLSY_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MSMS UPN48_class_I_Rep_3 7 543.315673828125 2 543.3157 1084.61685 NaN NaN NaN NaN NaN NaN NaN 69.385 1 72.898 72.398 73.398 3.5128 0 0 0 0.21832 1 15980 15980 15.248 0 1 + 57880 18426 36523 36542 66470 66470 0.07792370796960313 YSLNHPPLY 9 Unmodified _YSLNHPPLY_ 0 0 0 REV__MER21C_dup3274|chr10:21622693-21623539:-|2.0031329817439776|0.004427415464672|8.82|150.0|29|3|sense REV__MER21C_dup3274|chr10:21622693-21623539:-|2.0031329817439776|0.004427415464672|8.82|150.0|29|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.2798461914062 2 552.279649 1102.54475 0.63006 0.00034797 -0.40723 -0.0002249 0.22283 0.00012307 552.27957472635 58.914 0.79 62.4 62.004 62.794 3.487 87 49 2 0 0 0 0.23311 2 12957 12842;12957 18.135 3.5533 1 226900 + 57881 31231 36524 36543 66471;66472 66472 -0.0024254355676021078 YSLNPWVC 8 Unmodified _YSLNPWVC_ 0 0 0 REV__HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|82|1|anti-sense REV__HERVIP10F-int_dup207|chr14:92625544-92627789:-|2.0247863470756395|0.0296416284905994|6.09|150.0|82|1|anti-sense MSMS UPN48_class_I_Rep_2 6 491.29901123046875 2 491.228571 980.442588 NaN NaN NaN NaN NaN NaN NaN 111.34 1 115.01 114.51 115.51 3.6666 0 0 0 0.40738 1 26484 26484 0.79363 0 1 + 57882 23752 36525 36544 66473 66473 -0.04841532900047696 YSLPGILHF 9 Unmodified _YSLPGILHF_ 0 0 0 nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN nc|ENSG00000115808|O43815-2|STRN nc|ENSG00000115808|O43815-2|STRN MULTI-MSMS UPN48_class_I_Rep_3 7 523.677978515625 2 523.78711 1045.55967 0.46944 0.00024589 -0.3144 -0.00016468 0.15504 8.1208E-05 523.7868062078942 76.56 0.26207 80.144 79.962 80.224 3.5831 46 29 2 0 0 0 0.3898 1 18025 18025 8.5933 3.8373 1 125030 57883 2141 36526 36545 66474 66474 0.038709483112370435 YSLPKLTCMC 10 Unmodified _YSLPKLTCMC_ 0 0 0 nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9;ENSG00000183826|ENST00000481247|BTBD9 nc|ENSG00000183826|Q96Q07-3|BTBD9 nc|ENSG00000183826|Q96Q07-3|BTBD9 MSMS UPN47_class_I_Rep_1 2 579.7640991210938 2 579.771431 1157.52831 NaN NaN NaN NaN NaN NaN NaN 37.235 1 40.904 40.404 41.404 3.6692 0 0 0 0.53105 1 7043 7043 1.6526 0.96225 1 57884 5023 36527 36546 66475 66475 -0.04415452101034134 YSLQHKLLL 9 Unmodified _YSLQHKLLL_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS UPN48_class_I_Rep_1 5 557.834716796875 2 557.834591 1113.65463 0.45956 0.00025636 -0.26069 -0.00014542 0.19888 0.00011094 557.8345080611542 48.566 0.74559 52.09 51.738 52.484 3.5239 85 50 2 0 0 0 0.053261 4 9719 9680;9719;9762;9779 47.594 13.193 1 250010 57885 1978 36528 36547 66476;66477;66478;66479 66477 0.10234881782434968 YSLQHKLLL 9 Unmodified _YSLQHKLLL_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS UPN48_class_I_Rep_2 6 557.8348999023438 2 557.834591 1113.65463 0.40123 0.00022382 -0.35307 -0.00019695 0.048164 2.6868E-05 557.8343580754397 48.324 0.80082 52.06 51.65 52.451 3.7361 116 58 3 0 0 0 0.062142 5 9646 9555;9562;9603;9646;9685 43.772 9.3707 1 246390 57886 1978 36528 36547 66480;66481;66482;66483;66484 66483 0.10234881782434968 YSLQHKLLL 9 Unmodified _YSLQHKLLL_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS UPN48_class_I_Rep_3 7 557.8342895507812 2 557.834591 1113.65463 0.32127 0.00017921 -0.3781 -0.00021092 -0.05683 -3.1702E-05 557.8344304059273 48.372 0.71856 52.005 51.781 52.5 3.6339 124 54 3 0 0 0 0.14216 4 9633 9546;9589;9633;9744 26.268 5.8536 1 224510 57887 1978 36528 36547 66485;66486;66487;66488 66487 0.10234881782434968 YSLRFYPRT 9 Unmodified _YSLRFYPRT_ 0 0 0 REV__LTR5_Hs_dup432|chr12:6885860-6886821:-|1.28086682856694|0.2678482805317252|2.26|151.0|55|3|anti-sense REV__LTR5_Hs_dup432|chr12:6885860-6886821:-|1.28086682856694|0.2678482805317252|2.26|151.0|55|3|anti-sense MSMS UPN48_class_I_Rep_3 7 601.8213500976562 2 601.819473 1201.62439 NaN NaN NaN NaN NaN NaN NaN 50.836 1 54.446 53.946 54.946 3.6105 0 0 0 0.39598 1 10356 10356 1.6526 0 1 + 57888 30957 36529 36548 66489 66489 0.031645231171978594 YSLRKHGY 8 Unmodified _YSLRKHGY_ 0 0 0 REV__nc|ENSG00000173264|Q96N19-5|GPR137 REV__nc|ENSG00000173264|Q96N19-5|GPR137 MSMS UPN48_class_I_Rep_3 7 512.2715454101562 2 512.272158 1022.52976 NaN NaN NaN NaN NaN NaN NaN 41.422 1 45.068 44.568 45.568 3.6458 0 0 0 0.40581 1 7479 7479 2.8892 2.0956 1 + 57889 20481 36530 36549 66490 66490 0.01940009365887363 YSLSSTLTL 9 Unmodified _YSLSSTLTL_ 0 0 0 nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC MULTI-MSMS UPN48_class_I_Rep_1 5 492.7660827636719 2 492.76604 983.517527 0.20915 0.00010306 0.018076 8.9075E-06 0.22722 0.00011197 492.7659634797527 70.33 0.71752 73.789 73.439 74.157 3.4598 133 63 3 0 0 0 0.0067818 5 16442 16325;16365;16404;16442;16478 136.33 65.2 1 641090 57890 16811 36531 36550 66491;66492;66493;66494;66495 66494 0.02510928112201327 YSLSSTLTL 9 Unmodified _YSLSSTLTL_ 0 0 0 nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC MULTI-SECPEP UPN48_class_I_Rep_1 5 493.31817626953125 2 492.76604 983.517527 0.20915 0.00010306 0.018076 8.9075E-06 0.22722 0.00011197 492.7659634797527 70.33 0.71752 73.789 73.439 74.157 3.4598 133 63 3 0 0 0 0.043767 1 16300 16300 37.974 11.09 1 641090 57891 16811 36531 36550 66496 66496 0.02510928112201327 YSLSSTLTL 9 Unmodified _YSLSSTLTL_ 0 0 0 nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC MULTI-MSMS UPN48_class_I_Rep_2 6 492.76629638671875 2 492.76604 983.517527 0.26393 0.00013005 0.10883 5.3628E-05 0.37276 0.00018368 492.76602046587794 70.168 0.52755 73.704 73.399 73.927 3.5359 89 47 2 0 0 0 0.0069867 4 16324 16246;16285;16324;16367 123.45 45.301 1 274720 57892 16811 36531 36550 66497;66498;66499;66500 66499 0.02510928112201327 YSLSSTLTL 9 Unmodified _YSLSSTLTL_ 0 0 0 nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC MULTI-SECPEP UPN48_class_I_Rep_2 6 493.3183288574219 2 492.76604 983.517527 0.26393 0.00013005 0.10883 5.3628E-05 0.37276 0.00018368 492.76602046587794 70.168 0.52755 73.704 73.399 73.927 3.5359 89 47 2 0 0 0 0.06703 1 16237 16237 30.637 11.38 1 274720 57893 16811 36531 36550 66501 66501 0.02510928112201327 YSLSSTLTL 9 Unmodified _YSLSSTLTL_ 0 0 0 nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC MULTI-MSMS UPN48_class_I_Rep_3 7 492.7662048339844 2 492.76604 983.517527 0.3045 0.00015005 0.028089 1.3841E-05 0.33259 0.00016389 492.7659392248584 70.084 0.78813 73.596 73.25 74.038 3.5128 153 69 3 0 0 0 0.011838 5 16215 16140;16178;16215;16261;16298 180.01 67.417 1 624110 57894 16811 36531 36550 66502;66503;66504;66505;66506 66504 0.02510928112201327 YSLSSTLTL 9 Unmodified _YSLSSTLTL_ 0 0 0 nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC nc|ENSG00000211592|P01834|IGKC MULTI-SECPEP UPN48_class_I_Rep_3 7 493.318359375 2 492.76604 983.517527 0.3045 0.00015005 0.028089 1.3841E-05 0.33259 0.00016389 492.7659392248584 70.084 0.78813 73.596 73.25 74.038 3.5128 153 69 3 0 0 0 0.040444 1 16134 16134 52.268 12.311 1 624110 57895 16811 36531 36550 66507 66507 0.02510928112201327 YSLYPHTSF 9 Unmodified _YSLYPHTSF_ 0 0 0 REV__ENSG00000171054|ENST00000338616|OR13H1 REV__ENSG00000171054|ENST00000338616|OR13H1 MULTI-MSMS UPN48_class_I_Rep_3 7 557.763916015625 2 557.763832 1113.51311 0.46068 0.00025695 -0.6373 -0.00035546 -0.17662 -9.8511E-05 557.7633475780669 72.766 0.49248 76.303 76.17 76.662 3.5373 51 39 2 0 0 0 0.26948 1 16957 16957 15.847 0 1 115430 + 57896 20395 36532 36551 66508 66508 -0.03910536310718271 YSMDYNYFY 9 Unmodified _YSMDYNYFY_ 0 0 0 L1MC4_dup3919|chr2:233112088-233112677:-|2.0844944898859468|0.0138849458921245|7.23|151.0|28|2|anti-sense L1MC4_dup3919|chr2:233112088-233112677:-|2.0844944898859468|0.0138849458921245|7.23|151.0|28|2|anti-sense L1MC4_dup3919|chr2:233112088-233112677:-|2.0844944898859468|0.0138849458921245|7.23|151.0|28|2|anti-sense MSMS UPN47_class_I_Rep_1 2 633.2443237304688 2 633.244615 1264.47468 NaN NaN NaN NaN NaN NaN NaN 22.484 1 26.163 25.663 26.663 3.6796 0 0 0 0.4007 1 2621 2621 0.52476 0 1 57897 11493 36533 36552 66509 66509 -0.14698210007554735 YSMLYKYH 8 Unmodified _YSMLYKYH_ 0 0 0 L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|192|3|anti-sense L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|192|3|anti-sense L1PB2_dup2586|chr18:24294534-24297880:-|1.361131455901736|0.0099541270745898|7.1|146.0|192|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.7621459960938 2 552.762778 1103.511 0.63757 0.00035243 -0.87979 -0.00048631 -0.24221 -0.00013389 552.762447089094 13.306 0.28823 16.82 16.734 17.022 3.5133 59 39 2 0 0 0 0.82752 1 220 220 7.9102 0 1 55163 57898 15236 36534 36553 66510 66510 -0.036612883201769364 YSNDEENE 8 Unmodified _YSNDEENE_ 0 0 0 REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.2796325683594 2 500.180526 998.346499 NaN NaN NaN NaN NaN NaN NaN 40.955 1 44.461 43.961 44.961 3.506 0 0 0 0.40604 1 7407 7407 2.5775 0 1 + 57899 19184 36535 36554 66511 66511 -0.15274053997086412 YSNDEENE 8 Unmodified _YSNDEENE_ 0 0 0 REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF MSMS UPN48_class_I_Rep_1 5 500.0787353515625 2 500.180526 998.346499 NaN NaN NaN NaN NaN NaN NaN 41.866 1 45.374 44.874 45.874 3.5079 0 0 0 0.40604 1 7679 7679 2.5775 0 1 + 57900 19184 36535 36554 66512 66512 -0.15274053997086412 YSNDEENE 8 Unmodified _YSNDEENE_ 0 0 0 REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF MSMS UPN48_class_I_Rep_3 7 500.37994384765625 2 500.180526 998.346499 NaN NaN NaN NaN NaN NaN NaN 41.947 1 45.593 45.093 46.093 3.6458 0 0 0 0.40604 1 7634 7634 2.5775 0 1 + 57901 19184 36535 36554 66513 66513 -0.15274053997086412 YSNDEENE 8 Unmodified _YSNDEENE_ 0 0 0 REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF MSMS UPN48_class_I_Rep_3 7 500.267578125 2 500.180526 998.346499 NaN NaN NaN NaN NaN NaN NaN 44.917 1 48.554 48.054 49.054 3.6372 0 0 0 0.40604 1 8541 8541 2.5775 0 1 + 57902 19184 36535 36554 66514 66514 -0.15274053997086412 YSNDEENE 8 Unmodified _YSNDEENE_ 0 0 0 REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF REV__ENST00000588975.1_1_17:43138679-43163876:+|nuORF MSMS UPN48_class_I_Rep_3 7 500.2794494628906 2 500.180526 998.346499 NaN NaN NaN NaN NaN NaN NaN 47.442 1 51.079 50.579 51.579 3.6363 0 0 0 0.40604 1 9310 9310 2.5775 0 1 + 57903 19184 36535 36554 66515 66515 -0.15274053997086412 YSNFEKEY 8 Unmodified _YSNFEKEY_ 0 0 0 ENSG00000186867|ENST00000394427|QRFPR ENSG00000186867|ENST00000394427|QRFPR ENSG00000186867|ENST00000394427|QRFPR MULTI-MSMS UPN47_class_I_Rep_1 2 540.238037109375 2 540.237647 1078.46074 0.020509 1.1079E-05 0.20465 0.00011056 0.22515 0.00012164 540.2375698036926 41.522 0.70285 45.201 44.927 45.63 3.6792 107 49 3 0 0 0 0.82752 1 8416 8416 5.2307 0 1 163570 57904 5169 36536 36555 66516 66516 -0.0753511944433285 YSNFEKEY 8 Unmodified _YSNFEKEY_ 0 0 0 ENSG00000186867|ENST00000394427|QRFPR ENSG00000186867|ENST00000394427|QRFPR ENSG00000186867|ENST00000394427|QRFPR MULTI-MSMS UPN47_class_I_Rep_3 4 540.23779296875 2 540.237647 1078.46074 0.047024 2.5404E-05 0.29189 0.00015769 0.33891 0.00018309 540.2376330883234 42.024 0.847 45.263 44.945 45.792 3.2394 107 62 3 0 0 0 0.82752 3 8555 8555;8592;8631 14.838 0 1 98413 57905 5169 36536 36555 66517;66518;66519 66517 -0.0753511944433285 YSNKIDQIY 9 Unmodified _YSNKIDQIY_ 0 0 0 REV__L1ME3B_dup3442|chr7:77930815-77931909:+|1.1425339456526389|0.05461085202534|4.39|151.0|21|2|sense REV__L1ME3B_dup3442|chr7:77930815-77931909:+|1.1425339456526389|0.05461085202534|4.39|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 572.2874755859375 2 572.287671 1142.56079 0.43443 0.00024862 0.50878 0.00029117 0.94321 0.00053979 572.2876408312502 54.043 0.65664 57.557 57.196 57.852 3.5143 106 46 3 0 0 0 0.28552 1 11441 11441 14.838 0 1 381850 + 57906 28052 36537 36556 66520 66520 -0.004788821105194074 YSNKIYKHI 9 Unmodified _YSNKIYKHI_ 0 0 0 REV__L1MB8_dup4618|chr5:57251216-57252112:-|1.4813209136096113|0.1241649783253629|3.58|151.0|1|1|sense REV__L1MB8_dup4618|chr5:57251216-57252112:-|1.4813209136096113|0.1241649783253629|3.58|151.0|1|1|sense MSMS UPN48_class_I_Rep_1 5 583.322509765625 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 69.959 1 73.419 72.919 73.919 3.4598 0 0 0 0.39518 1 16267 16267 1.8442 0 1 + 57907 26418 36538 36557 66521 66521 0.053414072599935025 YSNLEKLMI 9 Unmodified _YSNLEKLMI_ 0 0 0 REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF MSMS UPN48_class_I_Rep_1 5 555.7969970703125 2 555.796817 1109.57908 NaN NaN NaN NaN NaN NaN NaN 39.185 1 42.689 42.189 43.189 3.5048 0 0 0 0.38299 1 6887 6887 4.756 0 1 + 57908 22007 36539 36558 66522 66522 0.028675365398157737 YSNLIKLL 8 Unmodified _YSNLIKLL_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS UPN47_class_I_Rep_1 2 482.2972412109375 2 482.29731 962.580068 -0.23793 -0.00011475 -0.043784 -2.1117E-05 -0.28172 -0.00013587 482.2972180898943 42.101 0.63618 45.78 45.404 46.04 3.6792 74 43 2 0 0 0 0.82752 1 8532 8532 13.508 0 1 100300 57909 3063 36540 36559 66523 66523 0.09728118971031563 YSNLIKLL 8 Unmodified _YSNLIKLL_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS UPN47_class_I_Rep_3 4 482.29742431640625 2 482.29731 962.580068 -0.22957 -0.00011072 -0.05147 -2.4824E-05 -0.28104 -0.00013554 482.2972847325717 42.876 0.70886 46.116 45.664 46.373 3.2394 63 46 2 0 0 0 0.82752 1 8839 8839 12.532 0 1 94832 57910 3063 36540 36559 66524 66524 0.09728118971031563 YSNNPGSSF 9 Unmodified _YSNNPGSSF_ 0 0 0 nc|ENSG00000166927|Q9GZW8-2|MS4A7;ENSG00000166927|ENST00000300184|MS4A7 nc|ENSG00000166927|Q9GZW8-2|MS4A7 nc|ENSG00000166927|Q9GZW8-2|MS4A7 MSMS UPN46_class_I_Rep_3 1 486.7061767578125 2 486.706514 971.398475 NaN NaN NaN NaN NaN NaN NaN 38.896 1 38.896 38.396 39.396 0 0 0 0 0.25702 1 7440 7440 13.042 0.51092 1 57911 4276 36541 36560 66525 66525 -0.08836845792654913 YSNRSEKLK 9 Unmodified _YSNRSEKLK_ 0 0 0 REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|59|2|sense REV__L1MA6|chr1:174325354-174327956:+|1.0407653575209237|0.0172998444792384|5.91|150.0|59|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 562.8057861328125 2 562.806562 1123.59857 -0.06735 -3.7905E-05 0.030542 1.7189E-05 -0.036808 -2.0716E-05 562.8065685720185 28.278 0.58634 32.044 31.767 32.353 3.7662 79 46 2 0 0 0 0.49187 1 4268 4268 1.4819 0 1 97039 + 57912 25486 36542 36561 66526 66526 0.04171628874951239 YSNTKWTK 8 Unmodified _YSNTKWTK_ 0 0 0 MSTB2_dup1431|chr17:60189936-60190360:+|1.0262337890269886|0.1024340739346319|3.32|151.0|15|3|sense MSTB2_dup1431|chr17:60189936-60190360:+|1.0262337890269886|0.1024340739346319|3.32|151.0|15|3|sense MSTB2_dup1431|chr17:60189936-60190360:+|1.0262337890269886|0.1024340739346319|3.32|151.0|15|3|sense MSMS UPN48_class_I_Rep_2 6 514.3334350585938 2 514.263999 1026.51345 NaN NaN NaN NaN NaN NaN NaN 62.712 1 66.186 65.686 66.686 3.4738 0 0 0 0.40625 1 14039 14039 2.3027 0 1 57913 16589 36543 36562 66527 66527 0.0012488340910294937 YSNYKIQIN 9 Unmodified _YSNYKIQIN_ 0 0 0 REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|4|1|sense REV__L1PB4_dup3742|chr9:5149426-5150846:+|3.38496969938914|0.131555467114057|4.69|151.0|4|1|sense MSMS UPN48_class_I_Rep_3 7 571.7958984375 2 571.795663 1141.57677 NaN NaN NaN NaN NaN NaN NaN 57.47 1 61.002 60.502 61.502 3.5317 0 0 0 0.39518 1 12365 12365 1.8442 0 1 + 57914 30590 36544 36563 66528 66528 0.011648241263856107 YSPDQVKKY 9 Unmodified _YSPDQVKKY_ 0 0 0 REV__nc|ENSG00000148498|Q8TEW0-5|PARD3 REV__nc|ENSG00000148498|Q8TEW0-5|PARD3 MSMS UPN48_class_I_Rep_2 6 563.8246459960938 2 564.290214 1126.56587 NaN NaN NaN NaN NaN NaN NaN 47.607 1 51.343 50.843 51.843 3.7361 0 0 0 0.39518 1 9421 9421 1.8442 0 1 + 57915 19591 36545 36564 66529 66529 0.007654217520894235 YSPIIEPFQK 10 Unmodified _YSPIIEPFQK_ 0 0 0 REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 611.3291625976562 2 611.329339 1220.64412 0.38843 0.00023746 -0.21156 -0.00012933 0.17687 0.00010812 611.3290264730632 69.725 0.78862 73.093 72.749 73.537 3.3678 175 74 3 0 0 0 0.56118 1 16882 16882 2.9952 0.71247 1 370470 + 57916 23357 36546 36565 66530 66530 0.042628543372984495 YSPIIEPFQK 10 Unmodified _YSPIIEPFQK_ 0 0 0 REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 611.3294677734375 2 611.329339 1220.64412 0.407 0.00024881 -0.24306 -0.00014859 0.16394 0.00010022 611.3290165930888 69.995 0.8485 73.271 72.884 73.733 3.2761 195 76 4 0 0 0 0.55148 1 17050 17050 5.2969 1.4206 1 442190 + 57917 23357 36546 36565 66531 66531 0.042628543372984495 YSPIIEPFQK 10 Unmodified _YSPIIEPFQK_ 0 0 0 REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 611.3297729492188 2 611.329339 1220.64412 0.46805 0.00028613 -0.43889 -0.00026831 0.029162 1.7828E-05 611.328887214543 69.842 0.91296 73.302 73.058 73.971 3.4598 149 72 3 0 0 0 0.55148 1 16242 16242 5.2969 2.0156 1 305920 + 57918 23357 36546 36565 66532 66532 0.042628543372984495 YSPIIEPFQK 10 Unmodified _YSPIIEPFQK_ 0 0 0 REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 611.329833984375 2 611.329339 1220.64412 0.62328 0.00038103 -0.56949 -0.00034815 0.053786 3.2881E-05 611.3287415190007 69.742 0.82028 73.255 72.897 73.717 3.5129 160 66 3 0 0 0 0.55148 1 16069 16069 5.2969 1.4206 1 305570 + 57919 23357 36546 36565 66533 66533 0.042628543372984495 YSPIIEPFQK 10 Unmodified _YSPIIEPFQK_ 0 0 0 REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense REV__HAL1_dup14781|chr10:75528136-75529492:+|5.745768826283178|0.0190016240549801|8.24|149.0|77|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 611.329339 1220.64412 0.48668 0.00029752 -0.22279 -0.0001362 0.26388 0.00016132 611.329072420455 69.734 0.64827 73.256 72.975 73.623 3.5216 0.027639 6.8996E-05 NaN 5.2969 120 52 3 NaN NaN NaN NaN 0 NaN NaN 0 293890 + 57920 23357 36546 36565 0.042628543372984495 YSPIKKKKL 9 Unmodified _YSPIKKKKL_ 0 0 0 L1MCb_dup1736|chr13:21560995-21561692:-|1.3664962369799305|0.0140991405631502|6.6|151.0|31|1|anti-sense L1MCb_dup1736|chr13:21560995-21561692:-|1.3664962369799305|0.0140991405631502|6.6|151.0|31|1|anti-sense L1MCb_dup1736|chr13:21560995-21561692:-|1.3664962369799305|0.0140991405631502|6.6|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 552.8599243164062 2 552.860609 1103.70667 NaN NaN NaN NaN NaN NaN NaN 74.345 1 77.895 77.395 78.395 3.5505 0 0 0 0.4007 1 17417 17417 0.52476 0 1 57921 11848 36547 36566 66534 66534 0.15896045196154773 YSPLFFLL 8 Unmodified _YSPLFFLL_ 0 0 0 L1MB7_dup17913|chr15:30441632-30442474:-|2.354961614798525|0.031496119479737|6.22|151.0|51|3|anti-sense L1MB7_dup17913|chr15:30441632-30442474:-|2.354961614798525|0.031496119479737|6.22|151.0|51|3|anti-sense L1MB7_dup17913|chr15:30441632-30442474:-|2.354961614798525|0.031496119479737|6.22|151.0|51|3|anti-sense MSMS UPN48_class_I_Rep_1 5 500.28961181640625 2 500.281129 998.547705 NaN NaN NaN NaN NaN NaN NaN 59.242 1 62.722 62.222 63.222 3.4801 0 0 0 0.38221 1 13000 13000 14.582 0 1 57922 10750 36548 36567 66535 66535 0.04837331568035097 YSPTTAYAQL 10 Unmodified _YSPTTAYAQL_ 0 0 0 REV__AluSc_dup18387|chr9:129923299-129923604:+|1.9555566863878469|0.1640101418042072|3.58|151.0|19|2|anti-sense REV__AluSc_dup18387|chr9:129923299-129923604:+|1.9555566863878469|0.1640101418042072|3.58|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_2 6 557.7839965820312 2 557.774396 1113.53424 NaN NaN NaN NaN NaN NaN NaN 47.129 1 50.878 50.378 51.378 3.7494 0 0 0 0.53105 1 9285 9285 9.3831 1.473 1 + 57923 17078 36549 36568 66536 66536 -0.017985710018592727 YSPVFSVPLL 10 Unmodified _YSPVFSVPLL_ 0 0 0 REV__L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|116|1|anti-sense REV__L1MA2_dup345|chr1:180324179-180327610:-|1.3143404500222045|0.0208077265964976|5.98|151.0|116|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 561.3160400390625 2 561.3157 1120.61685 0.42467 0.00023837 -0.033415 -1.8756E-05 0.39126 0.00021962 561.3155774240071 95.02 0.52445 98.922 98.755 99.279 3.9016 81 68 2 0 0 0 0.46161 1 22517 22517 14.838 0 1 127010 + 57924 24854 36550 36569 66537 66537 0.06136370796957635 YSPWNTIQP 9 Unmodified _YSPWNTIQP_ 0 0 0 L1PA11_dup3020|chr11:96285262-96286496:+|1.4496584910382453|0.0467752338439152|4.95|151.0|21|2|sense L1PA11_dup3020|chr11:96285262-96286496:+|1.4496584910382453|0.0467752338439152|4.95|151.0|21|2|sense L1PA11_dup3020|chr11:96285262-96286496:+|1.4496584910382453|0.0467752338439152|4.95|151.0|21|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.2694091796875 2 553.269281 1104.52401 0.61888 0.00034241 -0.11078 -6.1291E-05 0.5081 0.00028112 553.7706292502145 64.056 0.59547 67.514 67.178 67.774 3.4578 107 42 3 0 0 0 0.43153 1 14423 14423 6.2058 0 1 622470 57925 13669 36551 36570 66538 66538 -0.02407133936435457 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 621.2586059570312 2 621.259111 1240.50367 0.37502 0.00023298 -0.2965 -0.0001842 0.078519 4.878E-05 621.2588499548901 54.214 0.49889 57.716 57.57 58.069 3.5014 39 21 2 0 0 0 0.279 3 12253 12208;12253;12311 15.248 9.5166 1 95058 57926 680 36552 36571 66539;66540;66541 66540 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 621.257080078125 2 621.259111 1240.50367 0.51722 0.00032133 -0.21989 -0.00013661 0.29733 0.00018472 621.2587681502175 54.563 0.61741 57.881 57.61 58.227 3.3187 57 29 3 0 0 0 0.20317 6 12306 12285;12306;12329;12365;12390;12412 20.415 14.683 1 81376 57927 680 36552 36571 66542;66543;66544;66545;66546;66547 66543 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.2599487304688 2 621.259111 1240.50367 NaN NaN NaN NaN NaN NaN NaN 54.464 1 57.65 57.15 58.15 3.1856 0 0 0 0.18866 1 12369 12369 17.113 10.39 1 57928 680 36552 36571 66548 66548 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.2598876953125 2 621.259111 1240.50367 NaN NaN NaN NaN NaN NaN NaN 54.603 1 57.788 57.288 58.288 3.1856 0 0 0 0.21832 1 12412 12412 15.248 5.8654 1 57929 680 36552 36571 66549 66549 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.2595825195312 2 621.259111 1240.50367 NaN NaN NaN NaN NaN NaN NaN 54.739 1 57.925 57.425 58.425 3.1856 0 0 0 0.10427 1 12454 12454 23.79 14.407 1 57930 680 36552 36571 66550 66550 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.2587890625 2 621.259111 1240.50367 NaN NaN NaN NaN NaN NaN NaN 54.891 1 58.077 57.577 58.577 3.1856 0 0 0 0.34878 1 12500 12500 8.1555 2.4237 1 57931 680 36552 36571 66551 66551 -0.10696349386898873 YSQDYQQFY 9 Unmodified _YSQDYQQFY_ 0 0 0 ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000441812.6_1_3:50144918-50150831:+|nuORF ENST00000441812.6_1_3:50144918-50150831:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.2604370117188 2 621.259111 1240.50367 NaN NaN NaN NaN NaN NaN NaN 54.95 1 58.128 57.628 58.628 3.1779 0 0 0 0.29913 1 12518 12518 10.8 5.0677 1 57932 680 36552 36571 66552 66552 -0.10696349386898873 YSQELSLLY 9 Unmodified _YSQELSLLY_ 0 0 0 nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC nc|ENSG00000253729|P78527-2|PRKDC nc|ENSG00000253729|P78527-2|PRKDC MULTI-MSMS UPN47_class_I_Rep_2 3 558.2836303710938 2 558.284597 1114.55464 0.42271 0.00023599 -1.7117 -0.0009556 -1.289 -0.00071961 558.2833613743361 71.594 0.52677 74.884 74.666 75.193 3.2899 63 42 2 0 0 0 0.12096 1 17513 17513 29.841 5.6306 1 84195 57933 5749 36553 36572 66553 66553 0.0019459965797068435 YSQKTKLLK 9 Unmodified _YSQKTKLLK_ 0 0 0 REV__HAL1_dup8207|chr5:170237473-170239450:+|1.3157386708888872|0.0816381471741119|4.01|151.0|13|1|sense REV__HAL1_dup8207|chr5:170237473-170239450:+|1.3157386708888872|0.0816381471741119|4.01|151.0|13|1|sense MSMS UPN48_class_I_Rep_1 5 554.8399047851562 2 554.839874 1107.66519 NaN NaN NaN NaN NaN NaN NaN 42.296 1 45.804 45.304 46.304 3.5079 0 0 0 0.39428 1 7806 7806 2.0598 0 1 + 57934 23437 36554 36573 66554 66554 0.11566864436849755 YSQLDNVKF 9 Unmodified _YSQLDNVKF_ 0 0 0 MER65-int_dup404|chr6:166916464-166918224:+|1.470955180927242|0.1696000412009334|3.12|151.0|72|1|anti-sense MER65-int_dup404|chr6:166916464-166918224:+|1.470955180927242|0.1696000412009334|3.12|151.0|72|1|anti-sense MER65-int_dup404|chr6:166916464-166918224:+|1.470955180927242|0.1696000412009334|3.12|151.0|72|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 557.2813110351562 2 557.282389 1112.55022 0.46493 0.0002591 0.20334 0.00011332 0.66827 0.00037242 557.2823194089707 47.198 0.54317 50.72 50.45 50.994 3.5219 67 35 3 0 0 0 0.21527 1 9381 9381 19.257 4.4187 1 286900 57935 16170 36555 36574 66555 66555 -0.001548647649542545 YSQLDNVKF 9 Unmodified _YSQLDNVKF_ 0 0 0 MER65-int_dup404|chr6:166916464-166918224:+|1.470955180927242|0.1696000412009334|3.12|151.0|72|1|anti-sense MER65-int_dup404|chr6:166916464-166918224:+|1.470955180927242|0.1696000412009334|3.12|151.0|72|1|anti-sense MER65-int_dup404|chr6:166916464-166918224:+|1.470955180927242|0.1696000412009334|3.12|151.0|72|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 557.2831420898438 2 557.282389 1112.55022 0.32863 0.00018314 0.16159 9.0054E-05 0.49022 0.00027319 557.2825385635035 47.138 0.49949 50.774 50.479 50.978 3.6363 58 36 2 0 0 0 0.35081 1 9159 9159 10.824 1.4408 1 211930 57936 16170 36555 36574 66556 66556 -0.001548647649542545 YSQPPFFLF 9 Unmodified _YSQPPFFLF_ 0 0 0 REV__MLT1I-int_dup728|chr17:72923449-72923862:+|1.16524871003731|0.004626482711416|7.98|151.0|24|2|anti-sense REV__MLT1I-int_dup728|chr17:72923449-72923862:+|1.16524871003731|0.004626482711416|7.98|151.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 573.2866821289062 2 573.286943 1144.55933 0.38657 0.00022161 0.18732 0.00010739 0.57389 0.000329 573.2869866264654 46.888 0.53795 50.637 50.396 50.934 3.7494 70 39 2 0 0 0 0.41259 1 9290 9290 7.2892 0.56607 1 193400 + 57937 31770 36556 36575 66557 66557 -0.007164714086229651 YSQQIALGLL 10 Unmodified _YSQQIALGLL_ 0 0 0 REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|197|3|anti-sense REV__L1PB1_dup5338|chr6:121232711-121235699:-|1.6781183743458217|0.0408013931433129|5.36|151.0|197|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 553.3155517578125 2 553.316232 1104.61791 0.61521 0.0003404 -0.21513 -0.00011904 0.40007 0.00022137 553.3159712984218 64.183 0.90458 67.64 67.301 68.205 3.4578 109 67 3 0 0 0 0.56118 1 14675 14675 2.9952 0 1 470230 + 57938 30437 36557 36576 66558 66558 0.06978585165848017 YSQYYIKF 8 Unmodified _YSQYYIKF_ 0 0 0 REV__L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|67|3|sense REV__L1MA4_dup5137|chr9:124648356-124650726:+|1.2260831228194753|0.0116476445271319|6.72|149.0|67|3|sense MSMS UPN48_class_I_Rep_2 6 556.2742309570312 2 556.276575 1110.5386 NaN NaN NaN NaN NaN NaN NaN 39.336 1 43.065 42.565 43.565 3.7297 0 0 0 0.39819 1 6967 6967 8.5933 2.8614 1 + 57939 25180 36558 36577 66559 66559 -0.01225061788295534 YSRAERQDSH 10 Unmodified _YSRAERQDSH_ 0 0 0 L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|23|1|sense L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|23|1|sense L1PA15_dup4481|chrX:79298448-79301371:+|1.6596872332865795|0.0044175192559449|8.55|149.0|23|1|sense MSMS UPN46_class_I_Rep_3 1 624.7869873046875 2 624.789432 1247.56431 NaN NaN NaN NaN NaN NaN NaN 30.377 1 30.377 29.877 30.877 0 0 0 0 0.53105 1 4938 4938 0.35063 0 1 57940 13936 36559 36578 66560 66560 -0.04956819283961522 YSRAFDIKL 9 Unmodified _YSRAFDIKL_ 0 0 0 REV__ENST00000563105.1_1_6:109704068-109704245:+|nuORF REV__ENST00000563105.1_1_6:109704068-109704245:+|nuORF MSMS UPN48_class_I_Rep_1 5 556.8093872070312 2 556.808574 1111.60259 NaN NaN NaN NaN NaN NaN NaN 49.163 1 52.687 52.187 53.187 3.5239 0 0 0 0.39518 1 9905 9905 1.8442 0 1 + 57941 23039 36560 36579 66561 66561 0.05125718368640264 YSRAFDIKL 9 Unmodified _YSRAFDIKL_ 0 0 0 REV__ENST00000563105.1_1_6:109704068-109704245:+|nuORF REV__ENST00000563105.1_1_6:109704068-109704245:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 556.808837890625 2 556.808574 1111.60259 0.31075 0.00017303 -0.31956 -0.00017794 -0.008809 -4.9049E-06 556.8086837420097 48.967 0.31064 52.596 52.381 52.691 3.6291 28 25 2 0 0 0 0.46869 1 9791 9791 3.9444 0 1 87605 + 57942 23039 36560 36579 66562 66562 0.05125718368640264 YSRAIVTKTA 10 Unmodified _YSRAIVTKTA_ 0 0 0 L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|41|3|sense L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|41|3|sense L1MA5_dup39|chr1:50923445-50924700:+|1.2687470350246848|0.0125737285961418|6.66|150.0|41|3|sense MSMS UPN48_class_I_Rep_3 7 555.3193969726562 2 555.319306 1108.62406 NaN NaN NaN NaN NaN NaN NaN 97.807 1 101.71 101.21 102.21 3.9022 0 0 0 0.53105 1 23174 23174 0 0 1 57943 9910 36561 36580 66563 66563 0.07409103397390027 YSREPLFTFA 10 Unmodified _YSREPLFTFA_ 0 0 0 REV__ENSG00000175018|ENST00000368821|TEX36 REV__ENSG00000175018|ENST00000368821|TEX36 MULTI-MSMS UPN48_class_I_Rep_1 5 615.3145751953125 2 615.811313 1229.60807 0.49009 0.0003018 0.56027 0.00034502 1.0504 0.00064682 615.8117876285993 67.559 0.92287 71.011 70.544 71.466 3.4516 189 61 4 0 0 0 0.56309 1 15672 15672 1.6526 0.17072 1 904810 + 57944 20542 36562 36581 66564 66564 0.0024539716048366245 YSRIEEWL 8 Unmodified _YSRIEEWL_ 0 0 0 REV__L1MB8_dup11123|chr11:76500276-76500916:+|1.5513959209886947|0.0641503133735678|4.6|151.0|28|1|anti-sense REV__L1MB8_dup11123|chr11:76500276-76500916:+|1.5513959209886947|0.0641503133735678|4.6|151.0|28|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 548.2771606445312 2 548.277106 1094.53966 -0.21255 -0.00011654 -0.49855 -0.00027335 -0.71111 -0.00038988 548.2767069011562 13.602 0.40154 13.602 13.451 13.853 0 81 45 2 0 0 0 0.82752 1 470 470 0.69038 0 1 47730 + 57945 24545 36563 36582 66565 66565 -0.0038284741938241496 YSRIFQYF 8 Unmodified _YSRIFQYF_ 0 0 0 L1M4b_dup4117|chr19:20802452-20803604:-|1.8209579704062933|0.1067415405567115|4.09|150.0|40|3|sense L1M4b_dup4117|chr19:20802452-20803604:-|1.8209579704062933|0.1067415405567115|4.09|150.0|40|3|sense L1M4b_dup4117|chr19:20802452-20803604:-|1.8209579704062933|0.1067415405567115|4.09|150.0|40|3|sense MSMS UPN47_class_I_Rep_1 2 562.2822875976562 2 562.282192 1122.54983 NaN NaN NaN NaN NaN NaN NaN 76.31 1 79.725 79.225 80.225 3.4149 0 0 0 0.40746 1 18879 18879 0.69038 0 1 57946 9024 36564 36583 66566 66566 -0.006542396941540574 YSRKLKSPE 9 Unmodified _YSRKLKSPE_ 0 0 0 REV__ENSG00000138592.14,USP8,chr15,+,I20.1,50494281,50495847|28|4.73|2|intron REV__ENSG00000138592.14,USP8,chr15,+,I20.1,50494281,50495847|28|4.73|2|intron MSMS UPN48_class_I_Rep_1 5 554.7452392578125 2 554.31148 1106.60841 NaN NaN NaN NaN NaN NaN NaN 53.442 1 56.961 56.461 57.461 3.5192 0 0 0 0.38639 1 11217 11217 3.9444 0 1 + 57947 19278 36565 36584 66567 66567 0.05936816880330298 YSRQIIRHK 9 Unmodified _YSRQIIRHK_ 0 0 0 REV__MER34C__dup249|chr5:137984160-137984638:+|2.561295907250654|0.0317636135996211|6.33|151.0|1|1|sense REV__MER34C__dup249|chr5:137984160-137984638:+|2.561295907250654|0.0317636135996211|6.33|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 600.8512573242188 2 600.851638 1199.68872 NaN NaN NaN NaN NaN NaN NaN 39.832 1 39.832 39.332 40.332 0 0 0 0 0.40038 1 7686 7686 0.6015 0 1 + 57948 31269 36566 36585 66568 66568 0.09686722994001684 YSRRTPLLRM 10 Unmodified _YSRRTPLLRM_ 0 0 0 REV__ENSG00000112367|ENST00000230124|FIG4 REV__ENSG00000112367|ENST00000230124|FIG4 MSMS UPN48_class_I_Rep_3 7 646.866943359375 2 646.866431 1291.71831 NaN NaN NaN NaN NaN NaN NaN 50.67 1 54.291 53.791 54.791 3.621 0 0 0 0.53105 1 10305 10305 1.6526 0.45928 1 + 57949 18482 36567 36586 66569 66569 0.08411918947854247 YSRVVRTLR 9 Unmodified _YSRVVRTLR_ 0 0 0 ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 575.2584228515625 2 575.346189 1148.67783 0.49266 0.00028345 -1.2399 -0.00071338 -0.74725 -0.00042993 575.3452833276914 93.145 0.080254 93.145 93.07 93.15 0 13 7 2 0 0 0 0.12444 1 22552 22552 2.0598 0 1 256570 57950 7586 36568 36587 66570 66570 0.10943320619730912 YSRVVRTLR 9 Unmodified _YSRVVRTLR_ 0 0 0 ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF MULTI-MATCH UPN47_class_I_Rep_2 3 2 575.346189 1148.67783 0.59292 0.00034113 -1.4873 -0.00085572 -0.89439 -0.00051459 575.3451619489393 89.722 0.4741 93.179 93.035 93.509 3.4571 0.0037344 -0.00029269 NaN 2.0598 102 67 2 NaN NaN NaN NaN 0 NaN NaN 0 109810 57951 7586 36568 36587 0.10943320619730912 YSRVVRTLR 9 Unmodified _YSRVVRTLR_ 0 0 0 ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF MULTI-MATCH UPN47_class_I_Rep_3 4 2 575.346189 1148.67783 0.49453 0.00028452 -1.385 -0.00079686 -0.89049 -0.00051234 575.3453073381124 89.823 0.50312 93.22 93.005 93.509 3.3976 0.04488 -0.00017498 NaN 2.0598 101 63 2 NaN NaN NaN NaN 0 NaN NaN 0 126840 57952 7586 36568 36587 0.10943320619730912 YSRVVRTLR 9 Unmodified _YSRVVRTLR_ 0 0 0 ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 575.346189 1148.67783 0.40847 0.00023501 -1.0451 -0.00060132 -0.63667 -0.00036631 575.3454129835803 89.523 0.68673 93.149 92.84 93.527 3.6255 -0.027026 0.00021611 NaN 2.0598 150 75 3 NaN NaN NaN NaN 0 NaN NaN 0 362270 57953 7586 36568 36587 0.10943320619730912 YSRVVRTLR 9 Unmodified _YSRVVRTLR_ 0 0 0 ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF ENST00000586683.5_1_19:11663179-11663335:-|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 575.346189 1148.67783 0.48017 0.00027627 -1.2509 -0.0007197 -0.77073 -0.00044343 575.3452704245972 89.446 0.7949 93.184 92.895 93.69 3.7379 0.0086815 -2.0656E-05 NaN 2.0598 171 94 3 NaN NaN NaN NaN 0 NaN NaN 0 290440 57954 7586 36568 36587 0.10943320619730912 YSRYASWFN 9 Unmodified _YSRYASWFN_ 0 0 0 L1MCa_dup5129|chr11:5700873-5701316:-|1.3615968097704223|0.2047781941008189|2.73|151.0|2|1|sense L1MCa_dup5129|chr11:5700873-5701316:-|1.3615968097704223|0.2047781941008189|2.73|151.0|2|1|sense L1MCa_dup5129|chr11:5700873-5701316:-|1.3615968097704223|0.2047781941008189|2.73|151.0|2|1|sense MSMS UPN48_class_I_Rep_3 7 597.2697143554688 2 597.272355 1192.53016 NaN NaN NaN NaN NaN NaN NaN 51.669 1 55.28 54.78 55.78 3.6105 0 0 0 0.38639 1 10611 10611 3.9444 0.3479 1 57955 11820 36569 36588 66571 66571 -0.05840615704892116 YSSDEDEEEE 10 Unmodified _YSSDEDEEEE_ 0 0 0 REV__nc|ENSG00000198838|Q15413-2|RYR3 REV__nc|ENSG00000198838|Q15413-2|RYR3 MSMS UPN48_class_I_Rep_2 6 616.2097778320312 2 616.209677 1230.4048 NaN NaN NaN NaN NaN NaN NaN 115.89 1 119.55 119.05 120.05 3.6607 0 0 0 0.53105 1 27748 27748 0 0 1 + 57956 21152 36570 36589 66572 66572 -0.20118461933111575 YSSDTESE 8 Unmodified _YSSDTESE_ 0 0 0 ENSG00000101463|ENST00000376862|SYNDIG1 ENSG00000101463|ENST00000376862|SYNDIG1 ENSG00000101463|ENST00000376862|SYNDIG1 MSMS UPN46_class_I_Rep_3 1 459.1722412109375 2 459.17217 916.329786 NaN NaN NaN NaN NaN NaN NaN 31.004 1 31.004 30.504 31.504 0 0 0 0 0.40738 1 5126 5126 0.79363 0 1 57957 1574 36571 36590 66573 66573 -0.13172554883033172 YSSFVLPIW 9 Unmodified _YSSFVLPIW_ 0 0 0 MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|57|2|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|57|2|sense MER50-int_dup377|chr11:10005711-10009081:+|1.528010056528732|0.0410009338905617|5.22|151.0|57|2|sense MSMS UPN48_class_I_Rep_2 6 556.2962036132812 2 556.294768 1110.57498 NaN NaN NaN NaN NaN NaN NaN 86.163 1 89.869 89.369 90.369 3.7058 0 0 0 0.39428 1 20516 20516 2.0598 0 1 57958 16070 36572 36591 66574 66574 0.024118151084394412 YSSGVALIMSF 11 Unmodified _YSSGVALIMSF_ 0 0 0 REV__L1PA4_dup9359|chr12:19566570-19569155:+|1.3341491210492176|0.0959525463754483|3.8|151.0|143|3|anti-sense REV__L1PA4_dup9359|chr12:19566570-19569155:+|1.3341491210492176|0.0959525463754483|3.8|151.0|143|3|anti-sense MSMS UPN48_class_I_Rep_2 6 587.7955932617188 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 49.514 1 53.209 52.709 53.709 3.6946 0 0 0 0.38417 1 10012 10012 4.897 0.56777 1 + 57959 29694 36573 36592 66575 66575 -0.005847673228117856 YSSHSFAHET 10 Unmodified _YSSHSFAHET_ 0 0 0 ENST00000375290.6_3_9:98215758-98232201:-|nuORF;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1 ENST00000375290.6_3_9:98215758-98232201:-|nuORF ENST00000375290.6_3_9:98215758-98232201:-|nuORF MSMS UPN46_class_I_Rep_3 1 583.2489624023438 2 583.249077 1164.4836 NaN NaN NaN NaN NaN NaN NaN 119.08 1 119.08 118.58 119.58 0 0 0 0 0.53105 1 29583 29583 0 0 1 57960 5128 36574 36593 66576 66576 -0.09206100326878186 YSSLSLRYI 9 Unmodified _YSSLSLRYI_ 0 0 0 REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|99|1|anti-sense REV__Tigger1_dup3311|chr4:102590369-102592720:+|1.928825703549268|0.1969473888034455|3.29|151.0|99|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 551.30126953125 2 551.300581 1100.58661 0.35697 0.0001968 -0.15249 -8.4066E-05 0.20449 0.00011273 551.3006657795199 65.729 0.54051 68.985 68.62 69.16 3.2556 41 31 2 0 0 0 0.43153 2 15733 15733;15785 6.2058 0 1 115250 + 57961 32421 36575 36594 66577;66578 66577 0.04034012131751297 YSSLSSSKI 9 Unmodified _YSSLSSSKI_ 0 0 0 REV__ENSG00000135837.16,CEP350,chr1,+,I28.1,180065273,180073818|27|9.02|2|intron REV__ENSG00000135837.16,CEP350,chr1,+,I28.1,180065273,180073818|27|9.02|2|intron MSMS UPN48_class_I_Rep_1 5 486.2640686035156 2 486.25584 970.497126 NaN NaN NaN NaN NaN NaN NaN 45.778 1 49.295 48.795 49.795 3.5162 0 0 0 0.17222 1 8866 8866 18.146 2.2992 1 + 57962 19157 36576 36595 66579 66579 0.01069757452387421 YSSLSSSKI 9 Unmodified _YSSLSSSKI_ 0 0 0 REV__ENSG00000135837.16,CEP350,chr1,+,I28.1,180065273,180073818|27|9.02|2|intron REV__ENSG00000135837.16,CEP350,chr1,+,I28.1,180065273,180073818|27|9.02|2|intron MSMS UPN48_class_I_Rep_1 5 486.2633972167969 2 486.25584 970.497126 NaN NaN NaN NaN NaN NaN NaN 45.931 1 49.448 48.948 49.948 3.5162 0 0 0 0.25702 1 8912 8912 13.042 2.9685 1 + 57963 19157 36576 36595 66580 66580 0.01069757452387421 YSSNLRRHM 9 Unmodified _YSSNLRRHM_ 0 0 0 ENSG00000160961|ENST00000292530|ZNF333 ENSG00000160961|ENST00000292530|ZNF333 ENSG00000160961|ENST00000292530|ZNF333 MSMS UPN48_class_I_Rep_2 6 582.2890014648438 2 582.290556 1162.56656 NaN NaN NaN NaN NaN NaN NaN 42.834 1 46.592 46.092 47.092 3.7579 0 0 0 0.39518 1 7977 7977 1.8442 0 1 57964 3893 36577 36596 66581 66581 -0.008220620798510936 YSSNWVDEF 9 Unmodified _YSSNWVDEF_ 0 0 0 REV__ENSG00000213088|ENST00000368122|ACKR1 REV__ENSG00000213088|ENST00000368122|ACKR1 MULTI-MSMS UPN48_class_I_Rep_2 6 573.74072265625 2 573.740554 1145.46655 0.60336 0.00034617 -0.25321 -0.00014527 0.35015 0.0002009 573.7403539753624 55.154 0.69975 58.71 58.336 59.036 3.5559 101 39 3 0 0 0 0.20276 1 11695 11695 20.454 0 1 325380 + 57965 21241 36578 36597 66582 66582 -0.10036020932670908 YSSPFLYV 8 Unmodified _YSSPFLYV_ 0 0 0 L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|117|3|anti-sense L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|117|3|anti-sense L1MCc_dup2634|chr13:24461531-24463509:+|5.177521283948651|0.0705184736578532|6.2|151.0|117|3|anti-sense MSMS UPN48_class_I_Rep_2 6 487.78851318359375 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 47.483 1 51.219 50.719 51.719 3.7361 0 0 0 0.40581 1 9383 9383 2.8892 0 1 57966 11863 36579 36598 66583 66583 -0.013324222253913831 YSSPQTFY 8 Unmodified _YSSPQTFY_ 0 0 0 L1MA4_dup5161|chr9:6475745-6476282:-|1.3682558668323832|0.0141131545387951|6.6|151.0|30|2|anti-sense L1MA4_dup5161|chr9:6475745-6476282:-|1.3682558668323832|0.0141131545387951|6.6|151.0|30|2|anti-sense L1MA4_dup5161|chr9:6475745-6476282:-|1.3682558668323832|0.0141131545387951|6.6|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_2 3 496.71197509765625 2 496.721633 991.428712 NaN NaN NaN NaN NaN NaN NaN 54.636 1 57.954 57.454 58.454 3.3187 0 0 0 0.38112 1 12368 12368 14.838 0 1 57967 9698 36580 36599 66584 66584 -0.0673448712748268 YSSRFLVV 8 Unmodified _YSSRFLVV_ 0 0 0 REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|98|2|anti-sense REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|98|2|anti-sense MSMS UPN46_class_I_Rep_3 1 485.7835998535156 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 111.45 1 111.45 110.95 111.95 0 0 0 0 0.40738 1 27480 27480 0.79363 0 1 + 57968 24429 36581 36600 66585 66585 0.042383752771456784 YSSRFLVV 8 Unmodified _YSSRFLVV_ 0 0 0 REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|98|2|anti-sense REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|98|2|anti-sense MSMS UPN47_class_I_Rep_1 2 485.7725524902344 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 24.407 1 28.137 27.637 28.637 3.7298 0 0 0 0.40738 1 3184 3184 0.79363 0 1 + 57969 24429 36581 36600 66586 66586 0.042383752771456784 YSSRFLVV 8 Unmodified _YSSRFLVV_ 0 0 0 REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|98|2|anti-sense REV__L1M4_dup4013|chr3:158125119-158126874:-|1.009422724888967|0.0121774165499429|6.37|148.0|98|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.7723388671875 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 114.3 1 117.96 117.46 118.46 3.663 0 0 0 0.40738 1 27315 27315 0.79363 0 1 + 57970 24429 36581 36600 66587 66587 0.042383752771456784 YSSRNRREI 9 Unmodified _YSSRNRREI_ 0 0 0 L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|22|2|sense L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|22|2|sense L1MB8_dup15673|chr20:21316276-21317509:-|1.278650531900179|0.031092248275728|5.36|149.0|22|2|sense MSMS UPN47_class_I_Rep_2 3 590.8125610351562 2 590.81271 1179.61087 NaN NaN NaN NaN NaN NaN NaN 89.272 1 92.724 92.224 93.224 3.4525 0 0 0 0.39518 1 22181 22181 1.8442 0 1 57971 10959 36582 36601 66588 66588 0.028246653379937925 YSSSRSDLY 9 Unmodified _YSSSRSDLY_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENST00000568578.5_1_X:135956303-135956645:-|nuORF nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS UPN47_class_I_Rep_1 2 539.2459716796875 2 539.246003 1076.47745 -0.057665 -3.1096E-05 -0.11382 -6.1377E-05 -0.17148 -9.2473E-05 539.2459046765604 27.962 0.84965 31.729 31.418 32.267 3.7662 143 69 3 0 0 0 0.079935 5 4214 4159;4176;4214;4252;4290 38.615 27.629 1 272570 57972 3471 36583 36602 66589;66590;66591;66592;66593 66591 -0.057726185583760525 YSSSRSDLY 9 Unmodified _YSSSRSDLY_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENST00000568578.5_1_X:135956303-135956645:-|nuORF nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS UPN47_class_I_Rep_2 3 539.2457275390625 2 539.246003 1076.47745 -0.0014847 -8.006E-07 -0.21979 -0.00011852 -0.22128 -0.00011932 539.2458404134475 27.986 1.1442 31.485 31.127 32.272 3.4986 208 85 3 0 0 0 0.066364 6 4284 4238;4249;4284;4327;4366;4452 41.956 22.699 1 253870 57973 3471 36583 36602 66594;66595;66596;66597;66598;66599 66596 -0.057726185583760525 YSSSRSDLY 9 Unmodified _YSSSRSDLY_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENST00000568578.5_1_X:135956303-135956645:-|nuORF nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS UPN47_class_I_Rep_3 4 539.2457885742188 2 539.246003 1076.47745 -0.23135 -0.00012476 0.05041 2.7183E-05 -0.18094 -9.7572E-05 539.2459618496213 28.283 1.1941 31.617 31.215 32.409 3.3337 201 101 3 0 0 0 0.066364 5 4416 4346;4380;4416;4452;4488 41.956 22.699 1 229460 57974 3471 36583 36602 66600;66601;66602;66603;66604 66602 -0.057726185583760525 YSSTDFKFN 9 Unmodified _YSSTDFKFN_ 0 0 0 L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|136|3|anti-sense L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|136|3|anti-sense L1ME1_dup6544|chr3:123936844-123938647:-|1.211807634685187|0.1805930502684233|2.75|151.0|136|3|anti-sense MSMS UPN48_class_I_Rep_2 6 554.7525024414062 2 554.750921 1107.48729 NaN NaN NaN NaN NaN NaN NaN 52.662 1 56.301 55.801 56.801 3.639 0 0 0 0.39428 1 10962 10962 2.0598 0.21551 1 57975 12427 36584 36603 66605 66605 -0.06215430552970247 YSSVVIDRRF 10 Unmodified _YSSVVIDRRF_ 0 0 0 PPP2R3A|p.G988Efs*41|1|0.22|ENSG00000073711|chr3:136102041-136102041|G/-|frameshift_variant;ENSG00000073711|ENST00000264977|PPP2R3A PPP2R3A|p.G988Efs*41|1|0.22|ENSG00000073711|chr3:136102041-136102041|G/-|frameshift_variant PPP2R3A|p.G988Efs*41|1|0.22|ENSG00000073711|chr3:136102041-136102041|G/-|frameshift_variant MSMS UPN48_class_I_Rep_1 5 621.3351440429688 2 621.335487 1240.65642 NaN NaN NaN NaN NaN NaN NaN 70.369 1 73.829 73.329 74.329 3.4598 0 0 0 0.53105 1 16394 16394 1.6526 0.17072 1 57976 1119 36585 36604 66606 66606 0.04571890800366418 YSTALRRNE 9 Unmodified _YSTALRRNE_ 0 0 0 L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|17|2|sense L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|17|2|sense L1MC1_dup1132|chr2:10381705-10382598:+|1.673279853048041|0.0428842530026481|5.29|151.0|17|2|sense MSMS UPN48_class_I_Rep_1 5 555.3103637695312 2 555.288537 1108.56252 NaN NaN NaN NaN NaN NaN NaN 40.505 1 44.01 43.51 44.51 3.5048 0 0 0 0.38639 1 7277 7277 3.9444 1.3669 1 57977 11094 36586 36605 66607 66607 0.01258171698100341 YSTLKRREW 9 Unmodified _YSTLKRREW_ 0 0 0 L1M4a1_dup2508|chr22:29242852-29243317:-|1.0741435270986246|0.0099311999121135|6.76|146.0|6|2|sense L1M4a1_dup2508|chr22:29242852-29243317:-|1.0741435270986246|0.0099311999121135|6.76|146.0|6|2|sense L1M4a1_dup2508|chr22:29242852-29243317:-|1.0741435270986246|0.0099311999121135|6.76|146.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 619.835205078125 2 619.835654 1237.65676 NaN NaN NaN NaN NaN NaN NaN 73.338 1 73.338 72.838 73.838 0 0 0 0 0.39598 1 16996 16996 1.6526 0.45928 1 57978 8951 36587 36606 66608 66608 0.04743310520234445 YSTLQLTY 8 Unmodified _YSTLQLTY_ 0 0 0 Charlie1a_dup5574|chr20:45038682-45040015:-|1.321149491843026|0.0091227951392098|7.18|150.0|40|3|sense Charlie1a_dup5574|chr20:45038682-45040015:-|1.321149491843026|0.0091227951392098|7.18|150.0|40|3|sense Charlie1a_dup5574|chr20:45038682-45040015:-|1.321149491843026|0.0091227951392098|7.18|150.0|40|3|sense MSMS UPN48_class_I_Rep_3 7 494.752685546875 2 494.752933 987.491313 NaN NaN NaN NaN NaN NaN NaN 73.745 1 77.295 76.795 77.795 3.5505 0 0 0 0.40472 1 17267 17267 4.3292 0 1 57979 485 36588 36607 66609 66609 -0.0029334105928455756 YSTTSTYFQ 9 Unmodified _YSTTSTYFQ_ 0 0 0 nc|ENSG00000142794|Q9H094-4|NBPF3;nc|ENSG00000142794|Q9H094-5|NBPF3;nc|ENSG00000142794|Q9H094-2|NBPF3;nc|ENSG00000142794|Q9H094-3|NBPF3;ENSG00000142794|ENST00000318249|NBPF3 nc|ENSG00000142794|Q9H094-4|NBPF3 nc|ENSG00000142794|Q9H094-4|NBPF3 MULTI-MSMS UPN47_class_I_Rep_1 2 549.2435302734375 2 549.242929 1096.47131 0.037636 2.0671E-05 0.23131 0.00012705 0.26895 0.00014772 549.2430350798198 41.541 0.61766 45.221 44.954 45.572 3.6792 79 43 2 0 0 0 0.49187 1 8332 8332 1.4819 0 1 118260 57980 3265 36589 36608 66610 66610 -0.07307136789881952 YSTVIVDLFIA 11 Unmodified _YSTVIVDLFIA_ 0 0 0 L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|40|2|anti-sense L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|40|2|anti-sense L1M4a1_dup2001|chr13:99334528-99335177:+|1.3391139032508217|0.0425946049050389|4.97|151.0|40|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 620.8444213867188 2 620.844822 1239.67509 0.61945 0.00038458 -0.060594 -3.762E-05 0.55885 0.00034696 620.844590872318 81.275 0.18869 84.96 84.834 85.022 3.685 29 24 2 0 0 0 0.65559 1 19218 19218 2.7352 0 1 132860 57981 8948 36590 36609 66611 66611 0.06484007651556567 YSVAVRFEQ 9 Unmodified _YSVAVRFEQ_ 0 0 0 REV__AluJo_dup51765|chr12:109980073-109980367:-|1.0337100255063454|0.0265175468679305|5.28|151.0|12|3|sense REV__AluJo_dup51765|chr12:109980073-109980367:-|1.0337100255063454|0.0265175468679305|5.28|151.0|12|3|sense MULTI-SECPEP UPN47_class_I_Rep_2 3 549.279541015625 2 549.782556 1097.55056 0.50087 0.00027537 -1.8742 -0.0010304 -1.3733 -0.00075502 549.781206361526 81.709 0.050461 85.093 85.074 85.125 3.3839 9 5 2 0 0 0 0.11959 1 20361 20361 7.9102 0 1 35209 + 57982 17005 36591 36610 66612 66612 0.005685549549070856 YSVDCFFCCE 10 Unmodified _YSVDCFFCCE_ 0 0 0 L1PREC2_dup5822|chr12:19563304-19565281:-|1.1923985275240927|0.0535655410709174|4.48|150.0|128|3|anti-sense L1PREC2_dup5822|chr12:19563304-19565281:-|1.1923985275240927|0.0535655410709174|4.48|150.0|128|3|anti-sense L1PREC2_dup5822|chr12:19563304-19565281:-|1.1923985275240927|0.0535655410709174|4.48|150.0|128|3|anti-sense MSMS UPN48_class_I_Rep_1 5 405.79766845703125 3 405.810027 1214.40825 NaN NaN NaN NaN NaN NaN NaN 118.91 1 122.53 122.03 123.03 3.6189 0 0 0 0.53105 1 29016 29016 0.13989 0 1 57983 15473 36592 36611 66613 66613 -0.19037485165449652 YSVGRYKVI 9 Unmodified _YSVGRYKVI_ 0 0 0 REV__nc|ENSG00000105639|P52333-2|JAK3 REV__nc|ENSG00000105639|P52333-2|JAK3 MSMS UPN47_class_I_Rep_2 3 542.811767578125 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 34.195 1 37.635 37.135 38.135 3.4398 0 0 0 0.37891 1 6154 6154 5.7319 0 1 + 57984 18298 36593 36612 66614 66614 0.06922022231265146 YSVHVYVYI 9 Unmodified _YSVHVYVYI_ 0 0 0 REV__L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|9|1|sense REV__L1MC4_dup15702|chr10:86481672-86482767:+|2.2060353456839814|0.0305900528253039|6.17|151.0|9|1|sense MULTI-SECPEP UPN48_class_I_Rep_3 7 571.7216796875 2 571.797675 1141.5808 0.4895 0.0002799 0.38465 0.00021994 0.87415 0.00049984 571.7977214808125 63.804 0.39456 67.312 67.157 67.552 3.5083 33 30 2 0 0 0 0.11959 1 14337 14337 7.9102 0.62092 1 107660 + 57985 26826 36594 36613 66615 66615 0.0156691362010406 YSVIRSSF 8 Unmodified _YSVIRSSF_ 0 0 0 REV__HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|29|3|anti-sense REV__HAL1_dup69|chr1:9695079-9695561:+|2.4990471902001365|0.0176436136243259|7.15|151.0|29|3|anti-sense MSMS UPN48_class_I_Rep_2 6 479.30914306640625 2 479.753267 957.491981 NaN NaN NaN NaN NaN NaN NaN 47.699 1 51.435 50.935 51.935 3.7361 0 0 0 0.40501 1 9450 9450 3.9444 0 1 + 57986 23433 36595 36614 66616 66616 0.01153498380426754 YSVKILSPN 9 Unmodified _YSVKILSPN_ 0 0 0 MLT1B_dup3710|chr3:167462256-167462664:-|1.1491537652566357|0.1429242981276286|3.01|140.0|21|1|anti-sense MLT1B_dup3710|chr3:167462256-167462664:-|1.1491537652566357|0.1429242981276286|3.01|140.0|21|1|anti-sense MLT1B_dup3710|chr3:167462256-167462664:-|1.1491537652566357|0.1429242981276286|3.01|140.0|21|1|anti-sense MSMS UPN46_class_I_Rep_3 1 510.66192626953125 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 44.717 1 44.717 44.217 45.217 0 0 0 0 0.38784 1 9030 9030 3.5965 0 1 57987 16279 36596 36615 66617 66617 0.05614627103057046 YSVLGARETF 10 Unmodified _YSVLGARETF_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS UPN48_class_I_Rep_3 7 571.7952270507812 2 571.795663 1141.57677 0.33182 0.00018974 -1.3263 -0.00075836 -0.99445 -0.00056862 571.7946661357224 54.85 0.70679 58.42 58.001 58.708 3.5694 92 47 3 0 0 0 0.46742 1 11583 11583 14.405 0.79051 1 322910 57988 3341 36597 36616 66618 66618 0.011648241263628734 YSVLKAFLLCL 11 Unmodified _YSVLKAFLLCL_ 0 0 0 REV__nc|ENSG00000134955|Q8TED4-3|SLC37A2 REV__nc|ENSG00000134955|Q8TED4-3|SLC37A2 MSMS UPN48_class_I_Rep_3 7 635.3851318359375 2 635.36741 1268.72027 NaN NaN NaN NaN NaN NaN NaN 101.71 1 105.52 105.02 106.02 3.8153 0 0 0 0.38417 1 24047 24047 2.7352 1.2533 1 + 57989 19120 36598 36617 66619 66619 0.096655349131197 YSVLYIVL 8 Unmodified _YSVLYIVL_ 0 0 0 REV__L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense REV__L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense MSMS UPN48_class_I_Rep_1 5 485.2850036621094 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 50.985 1 54.509 54.009 55.009 3.5246 0 0 0 0.40404 1 10469 10469 5.2307 0 1 + 57990 26015 36599 36618 66620 66620 0.07273314222470617 YSVLYIVL 8 Unmodified _YSVLYIVL_ 0 0 0 REV__L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense REV__L1MB4_dup741|chr2:61353727-61354512:+|1.4040836999022148|0.0241295507176894|5.86|151.0|40|2|anti-sense MSMS UPN48_class_I_Rep_2 6 485.2863464355469 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 51.072 1 54.74 54.24 55.24 3.6679 0 0 0 0.40404 1 10490 10490 5.2307 0 1 + 57991 26015 36599 36618 66621 66621 0.07273314222470617 YSVPSFYEF 9 Unmodified _YSVPSFYEF_ 0 0 0 REV__ENSG00000161509|ENST00000293190|GRIN2C REV__ENSG00000161509|ENST00000293190|GRIN2C MULTI-SECPEP UPN48_class_I_Rep_3 7 569.28466796875 2 569.758215 1137.50188 0.5042 0.00028727 2.3939 0.0013639 2.8981 0.0016512 569.7596726976226 76.236 0.045456 79.819 79.784 79.829 3.5831 7 5 2 0 0 0 0.12034 1 17943 17943 3.9444 0 1 42148 + 57992 19905 36600 36619 66622 66622 -0.06137358404862425 YSVRKGHF 8 Unmodified _YSVRKGHF_ 0 0 0 ENSG00000163221|ENST00000368737|S100A12 ENSG00000163221|ENST00000368737|S100A12 ENSG00000163221|ENST00000368737|S100A12 MULTI-MSMS UPN48_class_I_Rep_1 5 497.2685546875 2 497.266876 992.519199 0.20271 0.0001008 -0.45815 -0.00022782 -0.25544 -0.00012702 497.2667201206715 40.547 1.0367 44.052 43.702 44.739 3.5048 145 96 2 0 0 0 0.82752 1 7222 7222 6.7232 2.7788 1 186820 57993 3993 36601 36620 66623 66623 0.022640267114752533 YSVYQDHVHT 10 Unmodified _YSVYQDHVHT_ 0 0 0 REV__ENST00000473999.2_1_12:124832131-124832948:-|nuORF REV__ENST00000473999.2_1_12:124832131-124832948:-|nuORF MSMS UPN47_class_I_Rep_1 2 416.8533020019531 3 416.859643 1247.5571 NaN NaN NaN NaN NaN NaN NaN 36.677 1 40.346 39.846 40.846 3.6692 0 0 0 0.53105 1 6874 6874 1.4551 0 1 + 57994 22520 36602 36621 66624 66624 -0.05677551884377863 YSWHAITDI 9 Unmodified _YSWHAITDI_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.A4192Gfs*13|1|0.08|ENSG00000168702|chr2:140322028-140322029|-/C|frameshift_variant ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS UPN48_class_I_Rep_2 6 553.2694702148438 2 553.269281 1104.52401 0.53313 0.00029497 -0.062059 -3.4336E-05 0.47107 0.00026063 553.2692762209666 63.962 0.70029 67.436 67.051 67.752 3.4743 121 51 3 0 0 0 0.33654 1 14405 14405 11.64 0 1 401290 57995 4386 36603 36622 66625 66625 -0.024071339364581945 YSWIYIFL 8 Unmodified _YSWIYIFL_ 0 0 0 L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|23|2|anti-sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|23|2|anti-sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|23|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 552.7918090820312 2 552.791861 1103.56917 0.38186 0.00021109 -2.9529 -0.0016324 -2.5711 -0.0014213 552.7902914082097 68.006 0.41518 71.276 71.082 71.497 3.2696 47 34 2 0 0 0 0.82752 3 16408 16408;16425;16429 13.508 4.1248 1 112830 57996 12834 36604 36623 66626;66627;66628 66626 0.02152716596742721 YSWIYIFL 8 Unmodified _YSWIYIFL_ 0 0 0 L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|23|2|anti-sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|23|2|anti-sense L1ME3G_dup1654|chr2:69926339-69926715:-|1.0854248714097154|0.1097133817693073|3.31|151.0|23|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 552.8251953125 2 552.791861 1103.56917 0.38186 0.00021109 -2.9529 -0.0016324 -2.5711 -0.0014213 552.7902914082097 68.006 0.41518 71.276 71.082 71.497 3.2696 47 34 2 0 0 0 0.72333 1 16462 16462 13.508 4.1604 1 112830 57997 12834 36604 36623 66629 66629 0.02152716596742721 YSWPEKKL 8 Unmodified _YSWPEKKL_ 0 0 0 ENSG00000107882|ENST00000369902|SUFU ENSG00000107882|ENST00000369902|SUFU ENSG00000107882|ENST00000369902|SUFU MSMS UPN47_class_I_Rep_2 3 525.7838745117188 2 525.784567 1049.55458 NaN NaN NaN NaN NaN NaN NaN 41.126 1 44.491 43.991 44.991 3.3655 0 0 0 0.40643 1 8257 8257 2.0598 0 1 57998 1839 36605 36624 66630 66630 0.031786444485987886 YSWPKNKK 8 Unmodified _YSWPKNKK_ 0 0 0 nc|ENSG00000056972|O43734-4|TRAF3IP2;nc|ENSG00000056972|O43734-3|TRAF3IP2;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 nc|ENSG00000056972|O43734-4|TRAF3IP2 nc|ENSG00000056972|O43734-4|TRAF3IP2 MSMS UPN48_class_I_Rep_1 5 525.7911987304688 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 31.066 1 34.601 34.101 35.101 3.5342 0 0 0 0.40625 1 4547 4547 2.3027 0 1 57999 948 36606 36625 66631 66631 0.04301466542756316 YSWQTDWL 8 Unmodified _YSWQTDWL_ 0 0 0 ENST00000232375.7_1_3:48555735-48555987:-|nuORF ENST00000232375.7_1_3:48555735-48555987:-|nuORF ENST00000232375.7_1_3:48555735-48555987:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 549.7503051757812 2 549.748182 1097.48181 0.54126 0.00029756 1.4437 0.00079369 1.985 0.0010912 549.7496725881889 62.452 1.0734 65.926 65.233 66.306 3.4738 153 81 3 0 0 0 0.82752 3 13806 13806;13884;13967 12.532 12.532 1 236090 58000 5887 36607 36626 66632;66633;66634 66632 -0.06303109344821678 YSWSSDTCVSS 11 Unmodified _YSWSSDTCVSS_ 0 0 0 REV__LTR45C_dup130|chr6:17656633-17657073:-|2.0455860044374776|0.120153817287533|4.09|151.0|31|3|anti-sense REV__LTR45C_dup130|chr6:17656633-17657073:-|2.0455860044374776|0.120153817287533|4.09|151.0|31|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 611.2409057617188 2 611.240061 1220.46557 0.56959 0.00034816 0.1005 6.1432E-05 0.6701 0.00040959 611.2403592229397 53.82 0.83927 57.401 56.975 57.815 3.5817 138 57 3 0 0 0 0.67113 1 11331 11331 1.3295 0.13619 1 378870 + 58001 30929 36608 36627 66635 66635 -0.13584603363869974 YSYAGGRGSY 10 Unmodified _YSYAGGRGSY_ 0 0 0 nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK nc|ENSG00000165119|P61978-3|HNRNPK MULTI-MSMS UPN48_class_I_Rep_1 5 540.7408447265625 2 540.740888 1079.46722 0.45839 0.00024787 -0.28899 -0.00015627 0.1694 9.1601E-05 540.7406467445193 28.936 1.1715 32.486 32.143 33.315 3.5499 275 119 3 0 0 0 0.1485 2 3981 3871;3981 88.364 3.007 1 645900 58002 4157 36609 36628 66636;66637 66637 -0.06933181492922813 YSYAGVYF 8 Unmodified _YSYAGVYF_ 0 0 0 REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|115|3|anti-sense REV__L1M1_dup3947|chr7:66935844-66937699:-|1.701654450922401|0.1043020876520842|4.03|151.0|115|3|anti-sense MSMS UPN47_class_I_Rep_2 3 485.23681640625 2 485.221268 968.427984 NaN NaN NaN NaN NaN NaN NaN 31.558 1 35.027 34.527 35.527 3.4691 0 0 0 0.4032 1 5357 5357 6.3541 0.59368 1 + 58003 24085 36610 36629 66638 66638 -0.05749281776525095 YSYATLICM 9 Oxidation (M) _YSYATLICM(Oxidation (M))_ YSYATLICM(1) YSYATLICM(74) 0 0 1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS UPN48_class_I_Rep_1 5 540.7410278320312 2 540.740654 1079.46675 0.45839 0.00024787 0.14468 7.8234E-05 0.60307 0.0003261 540.7406467445193 28.936 1.1715 32.486 32.143 33.315 3.5499 275 119 3 0 0 0 0.0064682 3 4013 3908;4013;4049 74.423 8.7512 1 645900 58004 2625 36611 36630 66639;66640;66641 66640 87 -0.06980060528690046 YSYATLICM 9 Oxidation (M) _YSYATLICM(Oxidation (M))_ YSYATLICM(1) YSYATLICM(74) 0 0 1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS UPN48_class_I_Rep_2 6 540.7407836914062 2 540.740654 1079.46675 0.49623 0.00026833 0.076491 4.1362E-05 0.57272 0.00030969 540.740628257543 28.955 1.0343 32.587 32.268 33.302 3.6316 290 113 4 0 0 0 0.0064682 6 4019 3988;4019;4055;4090;4119;4155 85.357 27.885 1 727830 58005 2625 36611 36630 66642;66643;66644;66645;66646;66647 66643 87 -0.06980060528690046 YSYATLICM 9 Oxidation (M) _YSYATLICM(Oxidation (M))_ YSYATLICM(1) YSYATLICM(74) 0 0 1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS UPN48_class_I_Rep_3 7 540.740966796875 2 540.740654 1079.46675 0.43429 0.00023484 0.098438 5.3229E-05 0.53273 0.00028807 540.7406354390898 28.791 1.1768 32.534 32.219 33.396 3.7424 368 133 4 0 0 0 0.0064682 5 3924 3924;3961;3993;4024;4057 85.357 27.885 1 660390 58006 2625 36611 36630 66648;66649;66650;66651;66652 66648 87 -0.06980060528690046 YSYFYRRTRPK 11 Unmodified _YSYFYRRTRPK_ 0 0 0 REV__L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|23|2|sense REV__L1ME3C_dup1468|chr7:131037038-131038151:+|1.2773653918245629|0.2157547072346601|2.57|151.0|23|2|sense MSMS UPN48_class_I_Rep_3 7 513.0130615234375 3 512.94052 1535.79973 NaN NaN NaN NaN NaN NaN NaN 40.533 1 44.184 43.684 44.684 3.6509 0 0 0 0.38417 1 7220 7220 0.45452 0 1 + 58007 28091 36612 36631 66653 66653 0.05326317911408296 YSYIQQLY 8 Unmodified _YSYIQQLY_ 0 0 0 REV__Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|54|2|anti-sense REV__Tigger1_dup11216|chr18:36022981-36023953:+|3.3481677525249767|0.1715509260790645|4.29|151.0|54|2|anti-sense MSMS UPN48_class_I_Rep_3 7 539.2677001953125 2 539.266207 1076.51786 NaN NaN NaN NaN NaN NaN NaN 74.887 1 78.453 77.953 78.953 3.5659 0 0 0 0.40625 1 17562 17562 2.3027 0.4585 1 + 58008 32356 36613 36632 66654 66654 -0.017336521679453654 YSYKALILE 9 Unmodified _YSYKALILE_ 0 0 0 REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|99|3|sense REV__L1MA9_dup4881|chr5:60965235-60968560:-|1.3096531653581585|0.0167987988394062|6.28|151.0|99|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.8070068359375 2 550.305332 1098.59611 0.49067 0.00027002 -0.20533 -0.00011299 0.28534 0.00015702 550.3050689355265 109.26 0.29231 112.93 112.81 113.11 3.6715 107 38 3 0 0 0 0.46434 1 25992 25992 4.3292 4.3292 1 8862300 + 58009 25634 36614 36633 66655 66655 0.05075780417269016 YSYKNQKLTL 10 Unmodified _YSYKNQKLTL_ 0 0 0 L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|45|3|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|45|3|anti-sense L1MC4a_dup1133|chr2:113730797-113731473:+|1.2822645469978862|0.3385265651735158|1.92|150.0|45|3|anti-sense MSMS UPN48_class_I_Rep_1 5 629.3475952148438 2 629.34552 1256.67649 NaN NaN NaN NaN NaN NaN NaN 51.593 1 55.116 54.616 55.616 3.5227 0 0 0 0.53105 1 10657 10657 1.1933 0.59184 1 58010 11547 36615 36634 66656 66656 0.05841641740335035 YSYLNIERN 9 Unmodified _YSYLNIERN_ 0 0 0 MER90a_dup567|chr8:89728282-89728824:-|1.0650363314722664|0.1479827733349793|2.85|151.0|30|2|anti-sense MER90a_dup567|chr8:89728282-89728824:-|1.0650363314722664|0.1479827733349793|2.85|151.0|30|2|anti-sense MER90a_dup567|chr8:89728282-89728824:-|1.0650363314722664|0.1479827733349793|2.85|151.0|30|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 586.2908325195312 2 586.290745 1170.56694 -0.038175 -2.2382E-05 0.33903 0.00019877 0.30086 0.00017639 586.2908191972676 39.516 1.1488 42.754 42.388 43.537 3.238 181 76 3 0 0 0 0.41259 1 7724 7724 7.2892 2.3922 1 395530 58011 16231 36616 36635 66657 66657 -0.011523638790094992 YSYLQQLCK 9 Unmodified _YSYLQQLCK_ 0 0 0 REV__L1ME1_dup25938|chr15:68159394-68160588:-|2.7761464464486427|0.1947672528380722|3.83|151.0|23|2|sense REV__L1ME1_dup25938|chr15:68159394-68160588:-|2.7761464464486427|0.1947672528380722|3.83|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 573.2872314453125 2 573.286617 1144.55868 0.39533 0.00022664 0.60487 0.00034677 1.0002 0.0005734 573.2870176056801 47.274 0.5353 50.796 50.433 50.968 3.5219 52 33 2 0 0 0 0.25207 1 9305 9305 16.942 4.4107 1 161000 + 58012 27710 36617 36636 66658 66658 -0.007816341199941235 YSYLQQLCK 9 Unmodified _YSYLQQLCK_ 0 0 0 REV__L1ME1_dup25938|chr15:68159394-68160588:-|2.7761464464486427|0.1947672528380722|3.83|151.0|23|2|sense REV__L1ME1_dup25938|chr15:68159394-68160588:-|2.7761464464486427|0.1947672528380722|3.83|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 573.2874145507812 2 573.286617 1144.55868 0.38657 0.00022161 0.75591 0.00043335 1.1425 0.00065496 573.2869866264654 46.888 0.53795 50.637 50.396 50.934 3.7494 70 39 2 0 0 0 0.33654 1 9198 9198 11.64 2.2572 1 193400 + 58013 27710 36617 36636 66659 66659 -0.007816341199941235 YSYLQQLCK 9 Unmodified _YSYLQQLCK_ 0 0 0 REV__L1ME1_dup25938|chr15:68159394-68160588:-|2.7761464464486427|0.1947672528380722|3.83|151.0|23|2|sense REV__L1ME1_dup25938|chr15:68159394-68160588:-|2.7761464464486427|0.1947672528380722|3.83|151.0|23|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 573.2879638671875 2 573.286617 1144.55868 0.39321 0.00022542 0.89436 0.00051273 1.2876 0.00073815 573.2871697852443 47.245 0.71676 50.881 50.506 51.223 3.6363 76 60 2 0 0 0 0.33654 1 9241 9241 11.64 0.81637 1 160280 + 58014 27710 36617 36636 66660 66660 -0.007816341199941235 YSYNQFSTY 9 Unmodified _YSYNQFSTY_ 0 0 0 ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC MULTI-MSMS UPN48_class_I_Rep_1 5 586.7482299804688 2 586.748379 1171.4822 0.46967 0.00027558 0.15781 9.2594E-05 0.62748 0.00036817 586.7483986525086 55.428 0.42293 58.937 58.719 59.142 3.5082 46 28 2 0 0 0 0.39745 3 11787 11787;11831;11872 8.1555 4.8742 1 112980 58015 3284 36618 36637 66661;66662;66663 66661 -0.09667734415597806 YSYNQFSTY 9 Unmodified _YSYNQFSTY_ 0 0 0 ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC MULTI-MSMS UPN48_class_I_Rep_2 6 586.7481689453125 2 586.748379 1171.4822 0.60662 0.00035594 -0.10806 -6.3402E-05 0.49857 0.00029253 586.7480367518103 55.435 0.46928 58.991 58.657 59.126 3.5559 35 27 2 0 0 0 0.24936 3 11820 11759;11799;11820 17.113 7.3037 1 79892 58016 3284 36618 36637 66664;66665;66666 66666 -0.09667734415597806 YSYNQFSTY 9 Unmodified _YSYNQFSTY_ 0 0 0 ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC MULTI-MSMS UPN48_class_I_Rep_3 7 587.250244140625 2 586.748379 1171.4822 0.38158 0.00022389 0.20352 0.00011941 0.5851 0.0003433 586.7483918346979 55.388 0.53624 58.943 58.589 59.125 3.5554 43 30 2 0 0 0 0.21414 4 11732 11686;11705;11732;11781 19.362 8.5624 1 112960 58017 3284 36618 36637 66667;66668;66669;66670 66669 -0.09667734415597806 YSYQDVIY 8 Unmodified _YSYQDVIY_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS UPN47_class_I_Rep_1 2 525.744873046875 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 33.134 1 36.833 36.333 37.333 3.6983 0 0 0 0.40643 1 5796 5796 2.0598 0.21551 1 58018 2238 36619 36638 66671 66671 -0.052179314389377396 YSYSYLKY 8 Unmodified _YSYSYLKY_ 0 0 0 REV__ENST00000471478.1_1_20:25196340-25204798:+|nuORF REV__ENST00000471478.1_1_20:25196340-25204798:+|nuORF MSMS UPN48_class_I_Rep_3 7 543.7630004882812 2 543.760758 1085.50696 NaN NaN NaN NaN NaN NaN NaN 69.268 1 72.781 72.281 73.281 3.5128 0 0 0 0.4044 1 15944 15944 4.756 0 1 + 58019 21089 36620 36639 66672 66672 -0.03237054542250917 YSYTLKLI 8 Unmodified _YSYTLKLI_ 0 0 0 MER5A1_dup15199|chr20:41041606-41041763:-|1.037216718827143|0.0150309749598797|6.11|151.0|9|2|anti-sense MER5A1_dup15199|chr20:41041606-41041763:-|1.037216718827143|0.0150309749598797|6.11|151.0|9|2|anti-sense MER5A1_dup15199|chr20:41041606-41041763:-|1.037216718827143|0.0150309749598797|6.11|151.0|9|2|anti-sense MSMS UPN48_class_I_Rep_2 6 500.7899475097656 2 500.789318 999.564084 NaN NaN NaN NaN NaN NaN NaN 50.007 1 53.702 53.202 54.202 3.6946 0 0 0 0.40604 1 10165 10165 2.5775 0 1 58020 16147 36621 36640 66673 66673 0.06428412734146605 YSYVAYVRI 9 Unmodified _YSYVAYVRI_ 0 0 0 L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|22|1|anti-sense L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|22|1|anti-sense L1MB3_dup11686|chr12:45898098-45898468:+|1.2685355775813738|0.251923393332287|2.33|151.0|22|1|anti-sense MSMS UPN47_class_I_Rep_1 2 567.3016357421875 2 567.303124 1132.5917 NaN NaN NaN NaN NaN NaN NaN 36.661 1 40.33 39.83 40.83 3.6692 0 0 0 0.39518 1 6869 6869 1.8442 0 1 58021 10322 36622 36641 66674 66674 0.030703159943641367 YSYVDFSCL 9 Unmodified _YSYVDFSCL_ 0 0 0 L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 548.7362670898438 2 548.736425 1095.4583 0.089345 4.9027E-05 -0.0338 -1.8547E-05 0.055546 3.048E-05 548.7363984834955 43.383 0.73443 47.071 46.754 47.489 3.6875 79 42 3 0 0 0 0.48643 1 8931 8931 2.0598 0 1 173420 58022 12949 36623 36642 66675 66675 -0.08561291173646168 YSYVDFSCL 9 Unmodified _YSYVDFSCL_ 0 0 0 L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 548.736425 1095.4583 0.089345 4.9027E-05 -0.0338 -1.8547E-05 0.055546 3.048E-05 548.7363984834955 43.383 0.73443 47.071 46.754 47.489 3.6875 0.035278 -5.8121E-05 NaN 2.0598 79 42 3 NaN NaN NaN NaN 0 NaN NaN 0 173420 58023 12949 36623 36642 -0.08561291173646168 YSYVDFSCL 9 Unmodified _YSYVDFSCL_ 0 0 0 L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 548.736425 1095.4583 0.12724 6.9821E-05 0.058209 3.1941E-05 0.18545 0.00010176 548.7364184066071 43.673 0.73679 47.031 46.711 47.447 3.358 -0.0039009 4.2856E-05 NaN 2.0598 69 39 2 NaN NaN NaN NaN 0 NaN NaN 0 150870 58024 12949 36623 36642 -0.08561291173646168 YSYVDFSCL 9 Unmodified _YSYVDFSCL_ 0 0 0 L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense L1ME4c_dup136|chr1:40411815-40412434:-|1.029119327177617|0.4358454312386965|1.24|150.0|44|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 548.736425 1095.4583 0.14971 8.215E-05 0.089666 4.9203E-05 0.23937 0.00013135 548.7364788866588 43.762 0.70877 47.004 46.743 47.452 3.2419 -0.031377 7.7379E-05 NaN 2.0598 73 42 2 NaN NaN NaN NaN 0 NaN NaN 0 162560 58025 12949 36623 36642 -0.08561291173646168 YSYVNKLL 8 Unmodified _YSYVNKLL_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|424|3|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|424|3|anti-sense MSMS UPN48_class_I_Rep_3 7 500.285888671875 2 500.279118 998.543683 NaN NaN NaN NaN NaN NaN NaN 50.355 1 53.976 53.476 54.476 3.621 0 0 0 0.40604 1 10207 10207 2.5775 0 1 + 58026 25097 36624 36643 66676 66676 0.04435242074339385 YSYVSLLPI 9 Unmodified _YSYVSLLPI_ 0 0 0 REV__L1M2_dup39|chr1:35528350-35529065:-|1.3519721741448318|0.0714055081534596|4.24|151.0|51|3|anti-sense REV__L1M2_dup39|chr1:35528350-35529065:-|1.3519721741448318|0.0714055081534596|4.24|151.0|51|3|anti-sense MSMS UPN48_class_I_Rep_1 5 527.7947998046875 2 527.794601 1053.57465 NaN NaN NaN NaN NaN NaN NaN 87.213 1 90.831 90.331 91.331 3.6187 0 0 0 0.26661 1 20896 20896 12.532 0 1 + 58027 24205 36625 36644 66677 66677 0.05000395388583456 YSYYRCKQ 8 Unmodified _YSYYRCKQ_ 0 0 0 REV__HAL1M8_dup925|chr7:129022482-129023828:+|1.3249607940145944|0.0081792778070427|7.34|151.0|24|2|sense REV__HAL1M8_dup925|chr7:129022482-129023828:+|1.3249607940145944|0.0081792778070427|7.34|151.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 555.754638671875 2 555.755484 1109.49641 NaN NaN NaN NaN NaN NaN NaN 41.468 1 45.219 44.719 45.719 3.7508 0 0 0 0.40404 1 7575 7575 5.2307 0.90143 1 + 58028 23482 36626 36645 66678 66678 -0.053953604683329104 YTAFSHSF 8 Unmodified _YTAFSHSF_ 0 0 0 nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1 nc|ENSG00000143473|O95259-2|KCNH1 nc|ENSG00000143473|O95259-2|KCNH1 MSMS UPN47_class_I_Rep_2 3 480.2325744628906 2 480.216517 958.418482 NaN NaN NaN NaN NaN NaN NaN 23.021 1 26.466 25.966 26.966 3.4447 0 0 0 0.38547 1 2831 2831 13.508 0.97634 1 58029 3301 36627 36646 66679 66679 -0.06239050062038132 YTAPLQVYH 9 Unmodified _YTAPLQVYH_ 0 0 0 REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF MSMS UPN47_class_I_Rep_3 4 546.2782592773438 2 546.279649 1090.54475 NaN NaN NaN NaN NaN NaN NaN 25.074 1 28.425 27.925 28.925 3.3509 0 0 0 0.39518 1 3466 3466 1.8442 0 1 + 58030 20030 36628 36647 66680 66680 0.003094564432331026 YTATKRAKSC 10 Unmodified _YTATKRAKSC_ 0 0 0 L1PA17_dup872|chr3:125269391-125270130:+|1.7078224380892535|0.0188758756917615|6.5|151.0|18|3|sense L1PA17_dup872|chr3:125269391-125270130:+|1.7078224380892535|0.0188758756917615|6.5|151.0|18|3|sense L1PA17_dup872|chr3:125269391-125270130:+|1.7078224380892535|0.0188758756917615|6.5|151.0|18|3|sense MSMS UPN48_class_I_Rep_2 6 564.80810546875 2 564.79514 1127.57573 NaN NaN NaN NaN NaN NaN NaN 73.97 1 77.548 77.048 78.048 3.5779 0 0 0 0.53105 1 17390 17390 8.7454 2.985 1 58031 14183 36629 36648 66681 66681 0.017042864858240137 YTAVVPLVY 9 Unmodified _YTAVVPLVY_ 0 0 0 ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN MULTI-MSMS UPN47_class_I_Rep_1 2 512.7899169921875 2 512.789318 1023.56408 0.25149 0.00012896 1.0063 0.00051599 1.2577 0.00064496 512.7895914346179 74.636 0.51552 78.03 77.835 78.35 3.3937 60 45 2 0 0 0 0.25207 2 18393 18393;18434 16.942 0 1 77022 58032 2755 36630 36649 66682;66683 66682 0.05324412734148609 YTAVVPLVY 9 Unmodified _YTAVVPLVY_ 0 0 0 ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN MSMS UPN47_class_I_Rep_2 3 512.7905883789062 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 74.812 1 78.125 77.625 78.625 3.3127 0 0 0 0.11494 1 18446 18446 21.747 4.8044 1 58033 2755 36630 36649 66684 66684 0.05324412734148609 YTAVVPLVY 9 Unmodified _YTAVVPLVY_ 0 0 0 ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN MSMS UPN47_class_I_Rep_2 3 512.7901611328125 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 74.945 1 78.258 77.758 78.758 3.3127 0 0 0 0.19137 1 18483 18483 16.942 0 1 58034 2755 36630 36649 66685 66685 0.05324412734148609 YTAVVPLVY 9 Unmodified _YTAVVPLVY_ 0 0 0 ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 2 512.789318 1023.56408 0.2861 0.00014671 1.8039 0.000925 2.09 0.0010717 512.7901884369297 74.863 0.41492 78.11 77.831 78.246 3.2464 -0.060869 0.00024821 NaN 16.942 59 45 2 NaN NaN NaN NaN 0 NaN NaN 0 94386 58035 2755 36630 36649 0.05324412734148609 YTAVVPLVY 9 Unmodified _YTAVVPLVY_ 0 0 0 ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN ENSG00000132465|ENST00000254801|JCHAIN MULTI-MATCH UPN48_class_I_Rep_3 7 2 512.789318 1023.56408 0.35843 0.0001838 2.2457 0.0011516 2.6041 0.0013354 512.7901120181912 74.806 0.034103 78.372 78.359 78.393 3.5659 0.20175 0.00070134 NaN 16.942 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 28243 58036 2755 36630 36649 0.05324412734148609 YTCCLVLAC 9 Unmodified _YTCCLVLAC_ 0 0 0 REV__L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|317|3|anti-sense REV__L1PA7_dup11786|chr15:56149423-56155773:+|2.458761025560328|0.1480033484945423|4.05|151.0|317|3|anti-sense MSMS UPN47_class_I_Rep_2 3 494.71942138671875 2 494.718667 987.422781 NaN NaN NaN NaN NaN NaN NaN 118.71 1 122.19 121.69 122.69 3.4822 0 0 0 0.4029 1 29056 29056 0 0 1 + 58037 30002 36631 36650 66686 66686 -0.07143368226672919 YTCICWVLF 9 Unmodified _YTCICWVLF_ 0 0 0 ENST00000378536.4_1_1:2240916-2241354:+|nuORF ENST00000378536.4_1_1:2240916-2241354:+|nuORF ENST00000378536.4_1_1:2240916-2241354:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 574.268798828125 2 574.269381 1146.52421 0.47687 0.00027385 -0.10562 -6.0654E-05 0.37125 0.0002132 574.2687769678308 61.459 0.9514 64.972 64.605 65.557 3.5128 181 80 3 0 0 0 0.45688 1 13632 13632 4.756 0.22714 1 548760 58038 6471 36632 36651 66687 66687 -0.043191735324398906 YTCLFCKIF 9 Unmodified _YTCLFCKIF_ 0 0 0 REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|249|3|anti-sense REV__L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|249|3|anti-sense MSMS UPN48_class_I_Rep_3 7 569.2769165039062 2 569.277206 1136.53986 NaN NaN NaN NaN NaN NaN NaN 55.875 1 59.43 58.93 59.93 3.5554 0 0 0 0.37476 1 11887 11887 6.7232 0 1 + 58039 30516 36633 36652 66688 66688 -0.022948870154095857 YTCSHAYCC 9 Unmodified _YTCSHAYCC_ 0 0 0 REV__L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|46|3|anti-sense REV__L1ME3B_dup65|chr1:27807432-27808142:+|1.434397628845093|0.4902003724468488|1.55|151.0|46|3|anti-sense MSMS UPN48_class_I_Rep_3 7 525.216796875 2 525.67753 1049.34051 NaN NaN NaN NaN NaN NaN NaN 117.91 1 121.52 121.02 122.02 3.6124 0 0 0 0.4029 1 28044 28044 0 0 1 + 58040 28074 36634 36653 66689 66689 -0.18218890305615787 YTCTGCYYCC 10 Unmodified _YTCTGCYYCC_ 0 0 0 ENST00000452760.2_1_17:20516367-20517318:+|nuORF ENST00000452760.2_1_17:20516367-20517318:+|nuORF ENST00000452760.2_1_17:20516367-20517318:+|nuORF MSMS UPN46_class_I_Rep_3 1 590.1844482421875 2 590.184331 1178.35411 NaN NaN NaN NaN NaN NaN NaN 43.253 1 43.253 42.753 43.753 0 0 0 0 0.53105 1 8622 8622 0.45834 0.10771 1 58041 6819 36635 36654 66690 66690 -0.2279340058867092 YTCYPASF 8 Unmodified _YTCYPASF_ 0 0 0 REV__L1PA6_dup4901|chr13:47907967-47914110:+|1.1775924301434912|0.0657619294126392|4.16|151.0|31|1|sense REV__L1PA6_dup4901|chr13:47907967-47914110:+|1.1775924301434912|0.0657619294126392|4.16|151.0|31|1|sense MSMS UPN46_class_I_Rep_3 1 476.32659912109375 2 476.199479 950.384405 NaN NaN NaN NaN NaN NaN NaN 33.811 1 33.811 33.311 34.311 0 0 0 0 0.40604 1 5960 5960 2.5775 0 1 + 58042 29924 36636 36655 66691 66691 -0.09277214545318202 YTDAVVHEIQ 10 Unmodified _YTDAVVHEIQ_ 0 0 0 ENSG00000138115|ENST00000371270|CYP2C8;nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;nc|ENSG00000108242|P33260-2|CYP2C18;ENSG00000108242|ENST00000285979|CYP2C18 ENSG00000138115|ENST00000371270|CYP2C8 ENSG00000138115|ENST00000371270|CYP2C8 MULTI-MSMS UPN48_class_I_Rep_3 7 588.2933349609375 2 587.790578 1173.5666 0.4211 0.00024752 1.4241 0.0008371 1.8452 0.0010846 588.2905231434644 56.965 0.25868 60.508 60.406 60.664 3.5427 43 27 2 0 0 0 0.3776 1 12240 12240 21.537 3.3906 1 309150 58043 3066 36637 36656 66692 66692 -0.013237835988547886 YTDFDGTRVY 10 Unmodified _YTDFDGTRVY_ 0 0 0 ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000102096|ENST00000376509|PIM2 ENSG00000137193|ENST00000373509|PIM1 ENSG00000137193|ENST00000373509|PIM1 MSMS UPN47_class_I_Rep_1 2 618.7807006835938 2 618.78021 1235.54587 NaN NaN NaN NaN NaN NaN NaN 45.612 1 49.312 48.812 49.812 3.6999 0 0 0 0.53105 1 9597 9597 1.1933 0 1 58044 3012 36638 36657 66693 66693 -0.06248373978496602 YTDHGSDHHY 10 Unmodified _YTDHGSDHHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 616.7425537109375 2 616.241783 1230.46901 -0.086175 -5.3105E-05 -0.05821 -3.5871E-05 -0.14438 -8.8976E-05 616.2416556264077 13.121 0.24139 16.578 16.509 16.75 3.457 38 24 3 0 0 0 0.47413 1 244 244 13.906 12.424 1 67121 58045 1153 36639 36658 66694 66694 -0.1370017247497799 YTDHGSDHHY 10 Unmodified _YTDHGSDHHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 616.2420654296875 2 616.241783 1230.46901 -0.43331 -0.00026702 -0.11448 -7.0548E-05 -0.54779 -0.00033757 616.2417621602245 13.229 0.1516 16.602 16.521 16.673 3.3734 32 16 3 0 0 0 0.54466 1 264 264 6.2058 6.2058 1 49246 58046 1153 36639 36658 66695 66695 -0.1370017247497799 YTDKIMTY 8 Oxidation (M) _YTDKIM(Oxidation (M))TY_ YTDKIM(1)TY YTDKIM(52)TY 0 0 1 nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 MULTI-MSMS UPN47_class_I_Rep_1 2 525.7442626953125 2 525.74425 1049.47395 -0.11672 -6.1363E-05 0.11486 6.0387E-05 -0.0018554 -9.7544E-07 525.7442017592451 32.549 0.73423 36.262 35.971 36.705 3.7131 126 60 3 0 0 0 0.82752 2 5599 5599;5637 79.596 31.25 1 228610 58047 1160 36640 36659 66696;66697 66696 32 -0.048810046565904486 YTDKIMTY 8 Oxidation (M) _YTDKIM(Oxidation (M))TY_ YTDKIM(1)TY YTDKIM(50)TY 0 0 1 nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 MULTI-MSMS UPN47_class_I_Rep_2 3 525.7442016601562 2 525.74425 1049.47395 -0.29255 -0.0001538 0.21391 0.00011246 -0.078637 -4.1343E-05 525.7442974192 32.824 0.76609 36.279 35.965 36.731 3.4547 129 58 3 0 0 0 0.82752 1 5735 5735 49.554 15.153 1 171110 58048 1160 36640 36659 66698 66698 32 -0.048810046565904486 YTDKIMTY 8 Oxidation (M) _YTDKIM(Oxidation (M))TY_ YTDKIM(1)TY YTDKIM(70)TY 0 0 1 nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 nc|ENSG00000076685|P49902-2|NT5C2 MULTI-MSMS UPN47_class_I_Rep_3 4 525.7439575195312 2 525.74425 1049.47395 -0.23146 -0.00012169 0.30983 0.00016289 0.078378 4.1207E-05 525.7442292811161 32.965 0.98426 36.251 35.979 36.963 3.2867 147 76 3 0 0 0 0.82752 2 5807 5807;5851 70.332 30.375 1 208630 58049 1160 36640 36659 66699;66700 66699 32 -0.048810046565904486 YTDLEAFAML 10 Unmodified _YTDLEAFAML_ 0 0 0 ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C MULTI-SECPEP UPN48_class_I_Rep_2 6 587.8170776367188 2 587.278457 1172.54236 0.48222 0.0002832 -2.6488 -0.0015556 -2.1666 -0.0012724 587.2774216333509 69.281 0.042847 72.803 72.773 72.816 3.5216 5 3 2 0 0 0 0.84575 1 16031 16031 6.7232 0 1 87566 58050 1411 36641 36660 66701 66701 -0.03700760076731058 YTDLSKNME 9 Unmodified _YTDLSKNME_ 0 0 0 REV__L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|72|3|sense REV__L1PA4_dup8475|chr10:74568781-74571878:-|1.0827469776191532|0.0256641220353719|5.4|151.0|72|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.7488403320312 2 550.750064 1099.48558 0.47522 0.00026173 0.90198 0.00049677 1.3772 0.0007585 550.7489801420904 47.26 0.20675 50.782 50.626 50.833 3.5219 16 11 2 0 0 0 0.48846 1 9319 9319 1.8442 0.19162 1 92947 + 58051 29683 36642 36661 66702 66702 -0.060188076332678975 YTDRALRASY 10 Unmodified _YTDRALRASY_ 0 0 0 ENST00000434568.5_1_22:19121711-19126708:-|nuORF;ENST00000472073.1_1_22:19121711-19131632:-|nuORF;ENSG00000100056|ENST00000252137|ESS2 ENST00000434568.5_1_22:19121711-19126708:-|nuORF ENST00000434568.5_1_22:19121711-19126708:-|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 406.20941162109375 3 405.875405 1214.60439 -1.3023 -0.00052858 0.60066 0.00024379 -0.70165 -0.00028478 405.8757148918547 29.858 0.673 33.181 32.961 33.634 3.3235 93 58 2 0 0 0 0.56107 1 4950 4950 3.0723 0.33707 1 50818 58052 1468 36643 36662 66703 66703 0.005667273866038158 YTDSHNFYF 9 Unmodified _YTDSHNFYF_ 0 0 0 REV__L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|71|1|anti-sense REV__L1MC2_dup3363|chr9:123242880-123244641:+|2.587555575284428|0.0653010415828938|5.31|151.0|71|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 597.2493896484375 2 597.248546 1192.48254 0.37971 0.00022678 0.26945 0.00016093 0.64916 0.00038771 597.2486126615685 54.091 0.57965 57.661 57.32 57.899 3.5694 62 39 2 0 0 0 0.37599 1 11244 11244 9.3831 0 1 196880 + 58053 26659 36644 36663 66704 66704 -0.10600314695761881 YTDSYTDTY 9 Unmodified _YTDSYTDTY_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN47_class_I_Rep_1 2 564.7219848632812 2 564.722027 1127.4295 -0.0098549 -5.5653E-06 0.23951 0.00013526 0.22966 0.00012969 564.7220365298522 41.231 0.75702 44.903 44.652 45.409 3.6719 94 55 3 0 0 0 0.012845 4 8253 8212;8253;8293;8334 68.081 30.107 1 139590 58054 3825;16725 36645 36664 66705;66706;66707;66708 66706 -0.12911737269087098 YTDSYTDTY 9 Unmodified _YTDSYTDTY_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN47_class_I_Rep_2 3 564.7216796875 2 564.722027 1127.4295 0.04809 2.7158E-05 0.22626 0.00012778 0.27436 0.00015493 564.72205744263 41.482 0.69075 44.848 44.614 45.305 3.3655 68 52 2 0 0 0 0.0067818 6 8375 8334;8344;8375;8384;8416;8458 85.272 33.004 1 126770 58055 3825;16725 36645 36664 66709;66710;66711;66712;66713;66714 66711 -0.12911737269087098 YTDSYTDTY 9 Unmodified _YTDSYTDTY_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MSMS UPN47_class_I_Rep_2 3 564.7227783203125 2 564.722027 1127.4295 NaN NaN NaN NaN NaN NaN NaN 41.941 1 45.302 44.802 45.802 3.3611 0 0 0 0.37476 1 8502 8502 6.7232 4.4204 1 58056 3825;16725 36645 36664 66715 66715 -0.12911737269087098 YTDSYTDTY 9 Unmodified _YTDSYTDTY_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MULTI-MSMS UPN47_class_I_Rep_3 4 564.7222290039062 2 564.722027 1127.4295 0.041884 2.3653E-05 0.21798 0.0001231 0.25986 0.00014675 564.7220979358432 41.621 0.57244 44.859 44.57 45.143 3.2372 97 50 3 0 0 0 0.047711 4 8487 8412;8450;8487;8529 49.933 22.221 1 137720 58057 3825;16725 36645 36664 66716;66717;66718;66719 66718 -0.12911737269087098 YTDSYTDTY 9 Unmodified _YTDSYTDTY_ 0 0 0 nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON nc|ENSG00000159140|P18583-2|SON MSMS UPN47_class_I_Rep_3 4 564.7228393554688 2 564.722027 1127.4295 NaN NaN NaN NaN NaN NaN NaN 41.894 1 45.131 44.631 45.631 3.2372 0 0 0 0.31276 1 8542 8542 10.074 4.8433 1 58058 3825;16725 36645 36664 66720 66720 -0.12911737269087098 YTDYYETPGR 10 Unmodified _YTDYYETPGR_ 0 0 0 REV__nc|ENSG00000169031|Q01955-5|COL4A3 REV__nc|ENSG00000169031|Q01955-5|COL4A3 MSMS UPN47_class_I_Rep_2 3 632.7776489257812 2 632.777667 1263.54078 NaN NaN NaN NaN NaN NaN NaN 15.69 1 19.076 18.576 19.576 3.3864 0 0 0 0.53105 1 875 875 0 0 1 + 58059 20294 36646 36665 66721 66721 -0.08044677841166958 YTEIPETEY 9 Unmodified _YTEIPETEY_ 0 0 0 THE1B_dup16929|chr12:82700770-82701131:-|1.3940011483914223|0.0213455384199783|6.03|149.0|15|1|anti-sense THE1B_dup16929|chr12:82700770-82701131:-|1.3940011483914223|0.0213455384199783|6.03|149.0|15|1|anti-sense THE1B_dup16929|chr12:82700770-82701131:-|1.3940011483914223|0.0213455384199783|6.03|149.0|15|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 572.7539672851562 2 572.755869 1143.49719 0.27499 0.0001575 -2.6584 -0.0015226 -2.3834 -0.0013651 572.7543025493659 46.096 0.37426 49.34 49.065 49.439 3.2441 26 20 2 0 0 0 0.41259 1 9836 9836 7.2892 0 1 49290 58060 32880 36647 36666 66722 66722 -0.06882287338271453 YTELEAIMY 9 Oxidation (M) _YTELEAIM(Oxidation (M))Y_ YTELEAIM(1)Y YTELEAIM(64)Y 0 0 1 ENST00000512029.1_1_5:118832263-118835290:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4 ENST00000512029.1_1_5:118832263-118835290:+|nuORF ENST00000512029.1_1_5:118832263-118835290:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 574.7627563476562 2 574.76264 1147.51073 0.36994 0.00021263 -0.13211 -7.5934E-05 0.23782 0.00013669 574.7624711341722 62.591 0.77761 65.95 65.645 66.423 3.3595 93 50 3 0 0 0 0.018707 2 14743 14743;14785 64.236 41.088 1 216850 58061 2817 36648 36667 66723;66724 66723 91 -0.057127528306864406 YTELEAIMY 9 Oxidation (M) _YTELEAIM(Oxidation (M))Y_ YTELEAIM(1)Y YTELEAIM(74)Y 0 0 1 ENST00000512029.1_1_5:118832263-118835290:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4 ENST00000512029.1_1_5:118832263-118835290:+|nuORF ENST00000512029.1_1_5:118832263-118835290:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 574.7625732421875 2 574.76264 1147.51073 0.4312 0.00024784 0.021475 1.2343E-05 0.45268 0.00026018 574.7625779128543 62.831 0.67525 66.087 65.78 66.455 3.2558 90 42 3 0 0 0 0.0064682 3 14882 14803;14842;14882 74.423 44.198 1 264140 58062 2817 36648 36667 66725;66726;66727 66727 91 -0.057127528306864406 YTELEAIMY 9 Oxidation (M) _YTELEAIM(Oxidation (M))Y_ YTELEAIM(1)Y YTELEAIM(64)Y 0 0 1 ENST00000512029.1_1_5:118832263-118835290:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4 ENST00000512029.1_1_5:118832263-118835290:+|nuORF ENST00000512029.1_1_5:118832263-118835290:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 574.7625732421875 2 574.76264 1147.51073 0.41229 0.00023697 0.018975 1.0906E-05 0.43127 0.00024788 574.7625344064177 62.847 0.84884 66.017 65.672 66.521 3.1698 95 50 3 0 0 0 0.018707 3 14911 14870;14911;14955 64.236 41.088 1 236610 58063 2817 36648 36667 66728;66729;66730 66729 91 -0.057127528306864406 YTELFKII 8 Unmodified _YTELFKII_ 0 0 0 REV__L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|19|1|sense REV__L1PA13_dup8066|chr16:72330688-72333335:-|2.7127698794667423|0.0459686464890238|5.88|151.0|19|1|sense MSMS UPN47_class_I_Rep_2 3 513.8068237304688 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 90.272 1 93.729 93.229 94.229 3.4571 0 0 0 0.40746 1 22401 22401 0.69038 0 1 + 58064 29129 36649 36668 66731 66731 0.06796699251208338 YTERAVFRY 9 Unmodified _YTERAVFRY_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MSMS UPN47_class_I_Rep_1 2 602.8092651367188 2 602.809105 1203.60366 NaN NaN NaN NaN NaN NaN NaN 37.309 1 40.975 40.475 41.475 3.6652 0 0 0 0.39334 1 7064 7064 1.6526 0 1 58065 1679 36650 36669 66732 66732 0.009999327375680878 YTESNKRY 8 Unmodified _YTESNKRY_ 0 0 0 REV__ENSG00000182489|ENST00000372956|XKRX REV__ENSG00000182489|ENST00000372956|XKRX MULTI-MSMS UPN47_class_I_Rep_3 4 530.7591552734375 2 530.756538 1059.49852 0.12348 6.5536E-05 0.57283 0.00030403 0.69631 0.00036957 530.7569156434143 44.308 0.98825 47.552 46.981 47.969 3.2441 90 55 2 0 0 0 0.82752 2 9116 9116;9160 7.2892 7.2892 1 187820 + 58066 20758 36651 36670 66733;66734 66733 -0.028846084588622034 YTETTTAD 8 Unmodified _YTETTTAD_ 0 0 0 REV__ENSG00000104369|ENST00000342232|JPH1 REV__ENSG00000104369|ENST00000342232|JPH1 MULTI-MSMS UPN47_class_I_Rep_1 2 451.1923522949219 2 451.192905 900.371257 -0.4434 -0.00020006 -0.05944 -2.6819E-05 -0.50284 -0.00022688 451.1927683729317 13.762 0.38336 17.219 17.114 17.497 3.457 58 46 2 0 0 0 0.82752 1 408 408 0 0 1 43479 + 58067 18256 36652 36671 66735 66735 -0.08291374123723472 YTETTTAD 8 Unmodified _YTETTTAD_ 0 0 0 REV__ENSG00000104369|ENST00000342232|JPH1 REV__ENSG00000104369|ENST00000342232|JPH1 MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 451.192905 900.371257 -0.4434 -0.00020006 -0.05944 -2.6819E-05 -0.50284 -0.00022688 451.1927683729317 13.762 0.38336 17.219 17.114 17.497 3.457 -0.012542 -1.7608E-05 NaN 0 58 46 2 NaN NaN NaN NaN 0 NaN NaN 0 43479 + 58068 18256 36652 36671 -0.08291374123723472 YTFALWPY 8 Unmodified _YTFALWPY_ 0 0 0 REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|207|1|anti-sense REV__HERVI-int_dup67|chr18:46870645-46876697:+|1.0745435070546157|0.093766401017768|3.52|151.0|207|1|anti-sense MSMS UPN48_class_I_Rep_3 7 530.7589721679688 2 530.760561 1059.50657 NaN NaN NaN NaN NaN NaN NaN 43.754 1 47.393 46.893 47.893 3.6385 0 0 0 0.40581 1 8181 8181 2.8892 0 1 + 58069 23719 36653 36672 66736 66736 -0.020804294714253047 YTFIEYSQ 8 Unmodified _YTFIEYSQ_ 0 0 0 REV__LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense REV__LTR49-int_dup1341|chr10:48380753-48382651:-|1.929803678608196|0.0230257433568119|6.39|151.0|3|1|sense MSMS UPN47_class_I_Rep_3 4 525.7333374023438 2 525.742565 1049.47058 NaN NaN NaN NaN NaN NaN NaN 36.089 1 39.344 38.844 39.844 3.2547 0 0 0 0.39996 1 6763 6763 7.9102 0 1 + 58070 30947 36654 36673 66737 66737 -0.052179314389377396 YTFIQEQWS 9 Unmodified _YTFIQEQWS_ 0 0 0 REV__L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|57|2|sense REV__L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|57|2|sense MSMS UPN48_class_I_Rep_1 5 601.27978515625 2 601.279846 1200.54514 NaN NaN NaN NaN NaN NaN NaN 58.595 1 62.082 61.582 62.582 3.487 0 0 0 0.38639 1 12799 12799 3.9444 0 1 + 58071 29179 36655 36674 66738 66738 -0.047111686275684406 YTFLFPDE 8 Unmodified _YTFLFPDE_ 0 0 0 REV__ENSG00000137270|ENST00000259803|GCM1 REV__ENSG00000137270|ENST00000259803|GCM1 MSMS UPN47_class_I_Rep_2 3 516.2383422851562 2 516.239658 1030.46476 NaN NaN NaN NaN NaN NaN NaN 36.252 1 39.663 39.163 40.163 3.4114 0 0 0 0.40604 1 6779 6779 2.5775 0 1 + 58072 19225 36656 36675 66739 66739 -0.04925029950618409 YTFLNPTQ 8 Unmodified _YTFLNPTQ_ 0 0 0 MER5A_dup32240|chr19:39344980-39345152:+|1.4555304870078862|0.1900329020115906|2.94|151.0|4|2|sense MER5A_dup32240|chr19:39344980-39345152:+|1.4555304870078862|0.1900329020115906|2.94|151.0|4|2|sense MER5A_dup32240|chr19:39344980-39345152:+|1.4555304870078862|0.1900329020115906|2.94|151.0|4|2|sense MSMS UPN48_class_I_Rep_2 6 492.2900390625 2 492.245275 982.475997 NaN NaN NaN NaN NaN NaN NaN 41.022 1 44.773 44.273 45.273 3.7508 0 0 0 0.4044 1 7450 7450 4.756 1.8668 1 58073 16146 36657 36676 66740 66740 -0.01594207856464891 YTFNKVLML 9 Oxidation (M) _YTFNKVLM(Oxidation (M))L_ YTFNKVLM(1)L YTFNKVLM(60)L 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS UPN48_class_I_Rep_1 5 572.8078002929688 2 572.807185 1143.59982 0.52155 0.00029875 0.49699 0.00028468 1.0185 0.00058343 572.8075739415196 64.056 0.31623 67.514 67.457 67.774 3.4578 28 21 2 0 0 0 0.025281 1 14467 14467 60.074 27.768 1 320230 58074 4055 36658 36677 66741 66741 128 0.033761269194883425 YTFNKVLML 9 Oxidation (M) _YTFNKVLM(Oxidation (M))L_ YTFNKVLM(1)L YTFNKVLM(77)L 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS UPN48_class_I_Rep_2 6 572.806884765625 2 572.807185 1143.59982 0.52264 0.00029937 0.069568 3.9849E-05 0.59221 0.00033922 572.8072651077989 63.856 0.66842 67.33 66.999 67.668 3.4743 85 47 2 0 0 0 0.0058741 2 14383 14383;14429 76.825 28.479 1 210380 58075 4055 36658 36677 66742;66743 66742 128 0.033761269194883425 YTFNKVLML 9 Oxidation (M) _YTFNKVLM(Oxidation (M))L_ YTFNKVLM(1)L YTFNKVLM(60)L 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS UPN48_class_I_Rep_3 7 572.8065185546875 2 572.807185 1143.59982 0.49145 0.00028151 0.17477 0.00010011 0.66622 0.00038161 572.8072992541618 63.801 0.40098 67.309 67.141 67.542 3.5083 45 30 3 0 0 0 0.025281 3 14262 14262;14303;14308 60.074 20.3 1 282670 58076 4055 36658 36677 66744;66745;66746 66744 128 0.033761269194883425 YTFNVVVNV 9 Unmodified _YTFNVVVNV_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MULTI-MSMS UPN47_class_I_Rep_2 3 527.7825927734375 2 527.782025 1053.5495 0.18177 9.5935E-05 0.38995 0.00020581 0.57172 0.00030174 528.2835730329009 75.985 0.24538 79.306 79.082 79.328 3.3216 35 24 2 0 0 0 0.24936 1 18770 18770 17.113 0 1 49010 + 58077 19669 36659 36678 66747 66747 0.024863405860060084 YTFSFFFDK 9 Unmodified _YTFSFFFDK_ 0 0 0 REV__L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|287|2|anti-sense REV__L1PA6_dup2301|chr6:12139363-12145531:+|6.260531375161406|0.4276956720776814|3.87|151.0|287|2|anti-sense MSMS UPN48_class_I_Rep_1 5 601.2857055664062 2 601.281857 1200.54916 NaN NaN NaN NaN NaN NaN NaN 58.617 1 62.104 61.604 62.604 3.487 0 0 0 0.37476 1 12806 12806 6.7232 0 1 + 58078 29858 36660 36679 66748 66748 -0.04309079133849991 YTFWGIQTY 9 Unmodified _YTFWGIQTY_ 0 0 0 REV__MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|28|2|anti-sense REV__MER74B_dup169|chr3:47722730-47723249:-|1.686729489318808|0.013405443448449|6.98|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_2 6 589.7816162109375 2 589.779482 1177.54441 NaN NaN NaN NaN NaN NaN NaN 49.303 1 53.021 52.521 53.521 3.7175 0 0 0 0.36505 1 9947 9947 7.2892 0 1 + 58079 31555 36661 36680 66749 66749 -0.03725963276610855 YTFYSISQER 10 Unmodified _YTFYSISQER_ 0 0 0 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 MULTI-MSMS UPN48_class_I_Rep_1 5 647.3095092773438 2 647.309135 1292.60372 0.43537 0.00028182 0.03387 2.1924E-05 0.46924 0.00030374 647.3091296192275 49.26 0.45094 52.784 52.595 53.046 3.5239 50 32 2 0 0 0 0.28795 1 9931 9931 35.08 16.707 1 176200 58080 5033 36662 36681 66750 66750 -0.03088112053092118 YTFYSISQER 10 Unmodified _YTFYSISQER_ 0 0 0 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 MULTI-MSMS UPN48_class_I_Rep_2 6 647.309326171875 2 647.309135 1292.60372 0.43148 0.0002793 -0.035814 -2.3183E-05 0.39567 0.00025612 647.3091247347201 49.094 0.49822 52.811 52.547 53.045 3.7175 51 32 2 0 0 0 0.44952 1 9841 9841 15.739 8.1297 1 139880 58081 5033 36662 36681 66751 66751 -0.03088112053092118 YTFYSISQER 10 Unmodified _YTFYSISQER_ 0 0 0 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 MULTI-MSMS UPN48_class_I_Rep_3 7 647.3089599609375 2 647.309135 1292.60372 0.55408 0.00035866 -0.1885 -0.00012201 0.36558 0.00023665 647.3089650202553 49.219 0.48109 52.848 52.64 53.121 3.6291 40 31 2 0 0 0 0.21584 2 9862 9862;9908 42.835 27.587 1 134270 58082 5033 36662 36681 66752;66753 66752 -0.03088112053092118 YTGGGNVNYY 10 Unmodified _YTGGGNVNYY_ 0 0 0 L1PB3_dup3158|chr16:53853327-53855315:-|1.062902531717513|0.0266691472331728|5.32|151.0|64|3|sense L1PB3_dup3158|chr16:53853327-53855315:-|1.062902531717513|0.0266691472331728|5.32|151.0|64|3|sense L1PB3_dup3158|chr16:53853327-53855315:-|1.062902531717513|0.0266691472331728|5.32|151.0|64|3|sense MSMS UPN47_class_I_Rep_2 3 554.25927734375 2 554.240721 1106.46689 NaN NaN NaN NaN NaN NaN NaN 62.488 1 65.745 65.245 66.245 3.257 0 0 0 0.53105 1 14760 14760 6.2058 0 1 58083 15283 36663 36682 66754 66754 -0.08208601212800204 YTGKLRPHY 9 Unmodified _YTGKLRPHY_ 0 0 0 ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1 ENST00000513199.5_1_4:99943548-99960531:+|nuORF ENST00000513199.5_1_4:99943548-99960531:+|nuORF MSMS UPN48_class_I_Rep_1 5 567.77978515625 2 567.806365 1133.59818 NaN NaN NaN NaN NaN NaN NaN 64.651 1 68.105 67.605 68.605 3.4541 0 0 0 0.38478 1 14653 14653 4.3292 0.38484 1 58084 4068 36664 36683 66755 66755 0.03672253945751436 YTGKLRPHY 9 Unmodified _YTGKLRPHY_ 0 0 0 ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1 ENST00000513199.5_1_4:99943548-99960531:+|nuORF ENST00000513199.5_1_4:99943548-99960531:+|nuORF MSMS UPN48_class_I_Rep_2 6 567.8052368164062 2 567.806365 1133.59818 NaN NaN NaN NaN NaN NaN NaN 64.516 1 67.99 67.49 68.49 3.4743 0 0 0 0.36505 1 14592 14592 7.2892 0.56607 1 58085 4068 36664 36683 66756 66756 0.03672253945751436 YTGKLRPHY 9 Unmodified _YTGKLRPHY_ 0 0 0 ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1 ENST00000513199.5_1_4:99943548-99960531:+|nuORF ENST00000513199.5_1_4:99943548-99960531:+|nuORF MSMS UPN48_class_I_Rep_3 7 567.8046264648438 2 567.806365 1133.59818 NaN NaN NaN NaN NaN NaN NaN 64.734 1 68.242 67.742 68.742 3.5083 0 0 0 0.36505 1 14573 14573 7.2892 0 1 58086 4068 36664 36683 66757 66757 0.03672253945751436 YTGKTKITD 9 Unmodified _YTGKTKITD_ 0 0 0 ENSG00000182359|ENST00000531837|KBTBD3 ENSG00000182359|ENST00000531837|KBTBD3 ENSG00000182359|ENST00000531837|KBTBD3 MULTI-MSMS UPN47_class_I_Rep_1 2 513.777099609375 2 513.776939 1025.53933 -0.2423 -0.00012449 -0.079117 -4.0648E-05 -0.32142 -0.00016514 513.7768871842206 16.358 0.27483 19.88 19.792 20.066 3.5224 43 32 2 0 0 0 0.50582 1 1073 1073 0 0 1 26970 58087 4951 36665 36684 66758 66758 0.02757732860732176 YTGLLAIT 8 Unmodified _YTGLLAIT_ 0 0 0 REV__L1MD2_dup10014|chr19:32612105-32613706:+|4.609676256971393|0.3893147493848892|3.57|151.0|38|2|sense REV__L1MD2_dup10014|chr19:32612105-32613706:+|4.609676256971393|0.3893147493848892|3.57|151.0|38|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 426.24676513671875 2 426.247286 850.48002 0.08224 3.5055E-05 -0.29098 -0.00012403 -0.20874 -8.8976E-05 426.2471413892479 96.869 0.49937 100.65 100.38 100.88 3.7804 92 63 2 0 0 0 0.82752 1 23017 23017 0 0 1 125030 + 58088 27381 36666 36685 66759 66759 0.04879881637214112 YTGLLVSLL 9 Unmodified _YTGLLVSLL_ 0 0 0 REV__L1MB3_dup8694|chr9:111481531-111482133:+|1.5558250782407144|0.0219894580618722|6.14|151.0|27|1|anti-sense REV__L1MB3_dup8694|chr9:111481531-111482133:+|1.5558250782407144|0.0219894580618722|6.14|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 489.7966613769531 2 489.797143 977.579734 NaN NaN NaN NaN NaN NaN NaN 90.177 1 93.634 93.134 94.134 3.4571 0 0 0 0.29868 1 22382 22382 10.824 0 1 + 58089 25926 36667 36686 66760 66760 0.09004699251181592 YTGLLVSLL 9 Unmodified _YTGLLVSLL_ 0 0 0 REV__L1MB3_dup8694|chr9:111481531-111482133:+|1.5558250782407144|0.0219894580618722|6.14|151.0|27|1|anti-sense REV__L1MB3_dup8694|chr9:111481531-111482133:+|1.5558250782407144|0.0219894580618722|6.14|151.0|27|1|anti-sense MSMS UPN47_class_I_Rep_2 3 489.79754638671875 2 489.797143 977.579734 NaN NaN NaN NaN NaN NaN NaN 90.35 1 93.807 93.307 94.307 3.4571 0 0 0 0.36505 1 22419 22419 7.2892 0 1 + 58090 25926 36667 36686 66761 66761 0.09004699251181592 YTGMECECGD 10 Unmodified _YTGMECECGD_ 0 0 0 REV__nc|nan|Q8TB03-2|CXorf38 REV__nc|nan|Q8TB03-2|CXorf38 MSMS UPN47_class_I_Rep_2 3 554.175537109375 2 554.175017 1106.33548 NaN NaN NaN NaN NaN NaN NaN 27.231 1 30.73 30.23 31.23 3.4986 0 0 0 0.53105 1 4057 4057 0.40072 0.050084 1 + 58091 20862 36668 36687 66762 66762 -0.21343238958866095 YTGSFLVPYE 10 Unmodified _YTGSFLVPYE_ 0 0 0 L1P3_dup425|chr2:206680855-206682358:-|2.882847488860415|0.0027174175689758|10.05|150.0|62|2|anti-sense;L1PA7_dup3913|chr5:131723717-131729576:-|7.042656490028039|0.3612177937525571|4.29|151.0|315|3|anti-sense;L1PA10_dup6531|chr18:62191435-62193808:-|1.4781474985084055|0.2148175815105902|2.78|151.0|92|1|anti-sense;L1PA6_dup5043|chr14:23973541-23977116:+|1.484021809970178|0.3423368987539888|2.12|151.0|202|3|anti-sense;L1PA8_dup5001|chrX:97199928-97206335:+|6.882385285667003|0.0423451096195462|7.34|151.0|210|1|anti-sense;L1P3_dup1488|chr7:36704354-36706164:+|1.208215524892102|0.0216081095456101|5.81|151.0|81|2|anti-sense;L1PA8_dup4862|chrX:75307836-75311156:-|1.463389533687761|0.1063279983357985|3.78|151.0|199|3|anti-sense;L1PA8_dup4496|chr9:70179874-70186005:-|3.808649819722688|0.4284082992525085|3.15|151.0|322|3|anti-sense;L1PA8_dup3202|chr6:106262564-106269055:+|2.1856487847513977|0.0881136770190609|4.63|151.0|340|3|anti-sense;L1PA7_dup9378|chr10:74603261-74609701:-|4.671228157342593|0.0510894875651041|6.51|151.0|196|1|anti-sense;L1PA7_dup6942|chr8:109214407-109219470:-|2.5621848410158155|0.1233702517209148|4.38|151.0|185|2|anti-sense;L1PA7_dup6622|chr8:42934395-42938690:-|1.980681188347708|0.0626891197590687|4.98|151.0|247|3|anti-sense;L1PA7_dup5909|chr7:26833414-26837339:+|1.6717486449548482|0.0446689248197687|5.23|149.0|124|1|anti-sense;L1PA7_dup4360|chr5:88793657-88797455:-|16.273566960886217|0.4871454071875122|5.06|151.0|185|2|anti-sense;L1PA7_dup304|chr1:92530205-92535921:+|1.633741213489816|0.278375664478837|2.55|151.0|280|3|anti-sense;L1PA8_dup5551|chr10:74347141-74353587:+|9.206058933214868|0.165036666181953|5.8|151.0|337|3|anti-sense;L1PA7_dup3031|chr4:42041758-42048239:+|2.6015907860459744|0.1376133383857822|4.24|151.0|340|3|anti-sense;L1PA7_dup1593|chr2:169615858-169619648:-|4.210566627479992|0.2588308271339004|4.02|151.0|220|3|anti-sense;L1PA7_dup1436|chr2:143326710-143328740:+|16.415375374123514|0.1425191941774627|6.85|151.0|124|3|anti-sense;L1PA7_dup12669|chr20:25700716-25707161:-|1.7718282625626998|0.1098067802387481|4.01|150.0|279|2|anti-sense;L1PA7_dup12242|chr18:13085125-13086446:-|1.2827695749693928|0.0412492399566487|4.96|151.0|66|2|anti-sense;L1PA7_dup1151|chr2:66485103-66487163:-|1.842734170497374|0.0759779657544799|4.6|128.0|110|2|anti-sense;L1PA7_dup1065|chr2:44594062-44595325:+|1.073073810959894|0.0645222645714403|4.06|151.0|80|3|anti-sense;L1PA7_dup10258|chr12:26899784-26903969:+|1.5449313269112124|0.2396787591687438|2.69|151.0|238|3|anti-sense;L1PA5_dup6054|chr9:6456002-6458575:-|1.5481139160796735|0.0147837551411957|6.71|150.0|117|2|anti-sense;L1PA11_dup3833|chr18:9162046-9164378:-|2.7452979804058235|0.0646306350229892|5.41|151.0|88|1|anti-sense;L1P3_dup1599|chr7:139677735-139679256:-|1.7249461560240875|0.4980709827695084|1.79|151.0|86|3|anti-sense;L1PA7_dup2207|chr3:71666960-71669417:+|1.079509951158259|0.0277798458065804|5.28|148.0|127|2|anti-sense;L1P3_dup3033|chr15:75971803-75977771:-|2.021627726714558|0.0493810742820842|5.36|150.0|177|1|anti-sense L1P3_dup425|chr2:206680855-206682358:-|2.882847488860415|0.0027174175689758|10.05|150.0|62|2|anti-sense L1P3_dup425|chr2:206680855-206682358:-|2.882847488860415|0.0027174175689758|10.05|150.0|62|2|anti-sense MSMS UPN48_class_I_Rep_3 7 588.286865234375 2 588.284597 1174.55464 NaN NaN NaN NaN NaN NaN NaN 37.136 1 40.799 40.299 41.299 3.663 0 0 0 0.53105 1 6223 6223 3.2813 0 1 58092 13521 36669 36688 66763 66763 -0.025654003420640947 YTGWPFQFY 9 Unmodified _YTGWPFQFY_ 0 0 0 REV__ENST00000465804.5_1_3:149236734-149236857:-|nuORF REV__ENST00000465804.5_1_3:149236734-149236857:-|nuORF MSMS UPN48_class_I_Rep_3 7 604.7750854492188 2 604.7742 1207.53385 NaN NaN NaN NaN NaN NaN NaN 18.492 1 22.08 21.58 22.58 3.5874 0 0 0 0.39428 1 1232 1232 2.0598 0 1 + 58093 22471 36670 36689 66764 66764 -0.061619459310350067 YTGYYLKR 8 Unmodified _YTGYYLKR_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense MSMS UPN48_class_I_Rep_1 5 532.2825927734375 2 532.282192 1062.54983 NaN NaN NaN NaN NaN NaN NaN 45.361 1 48.878 48.378 49.378 3.5162 0 0 0 0.4044 1 8740 8740 4.756 0 1 58094 8222 36671 36690 66765 66765 0.021057603058579843 YTGYYLKR 8 Unmodified _YTGYYLKR_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 532.2823486328125 2 532.282192 1062.54983 0.34571 0.00018402 -0.82178 -0.00043742 -0.47607 -0.0002534 532.2815815629234 45.438 0.61501 49.196 48.825 49.44 3.7579 73 49 2 0 0 0 0.82752 1 8704 8704 8.5933 0 1 142030 58095 8222 36671 36690 66766 66766 0.021057603058579843 YTGYYLKR 8 Unmodified _YTGYYLKR_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 532.2819213867188 2 532.282192 1062.54983 0.43407 0.00023105 -1.0074 -0.00053624 -0.57337 -0.0003052 532.2815937292038 45.732 0.48195 49.369 49.048 49.53 3.6369 43 34 2 0 0 0 0.82752 1 8744 8744 12.532 0 1 156930 58096 8222 36671 36690 66767 66767 0.021057603058579843 YTGYYLKR 8 Unmodified _YTGYYLKR_ 0 0 0 HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense HERVIP10FH-int_dup197|chrX:45000001-45004021:-|2.983009932104056|0.060788861873221|5.62|151.0|32|1|sense MSMS UPN48_class_I_Rep_3 7 532.2821655273438 2 532.282192 1062.54983 NaN NaN NaN NaN NaN NaN NaN 45.41 1 49.047 48.547 49.547 3.6369 0 0 0 0.4044 1 8691 8691 4.756 0 1 58097 8222 36671 36690 66768 66768 0.021057603058579843 YTHDVLTQF 9 Unmodified _YTHDVLTQF_ 0 0 0 REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|54|1|anti-sense REV__L1MA9_dup8087|chr8:91112421-91113901:+|1.7257820096930476|0.2915706576030166|2.57|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 562.275390625 2 562.274564 1122.53457 0.5356 0.00030116 -0.30502 -0.00017151 0.23058 0.00012965 562.2742687385677 52.687 0.68223 56.319 55.965 56.647 3.6322 102 45 3 0 0 0 0.13631 1 10881 10881 26.884 4.1474 1 318900 + 58098 25645 36672 36691 66769 66769 -0.021791512820072967 YTHFALITL 9 Unmodified _YTHFALITL_ 0 0 0 REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B MSMS UPN47_class_I_Rep_3 4 539.7981567382812 2 539.800217 1077.58588 NaN NaN NaN NaN NaN NaN NaN 59.151 1 62.317 61.817 62.817 3.1658 0 0 0 0.046744 1 13799 13799 37.974 5.6685 1 + 58099 19759 36673 36692 66770 66770 0.05019217482708882 YTHHGRQYL 9 Unmodified _YTHHGRQYL_ 0 0 0 ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5 ENST00000496688.1_1_9:123589031-123593637:-|nuORF ENST00000496688.1_1_9:123589031-123593637:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 587.7947998046875 2 587.791247 1173.56794 0.42109 0.00024752 0.28649 0.0001684 0.70759 0.00041592 588.2905231434644 56.965 0.25868 60.508 60.406 60.664 3.5427 43 27 2 0 0 0 0.31407 2 12231 12231;12236 13.042 2.2185 1 309150 58100 1408 36674 36693 66771;66772 66771 -0.011901047194214698 YTHIYICF 8 Unmodified _YTHIYICF_ 0 0 0 L1MC3_dup2414|chr3:129887675-129888670:+|1.1945189685735262|0.0341790226516087|5.13|151.0|69|3|anti-sense L1MC3_dup2414|chr3:129887675-129888670:+|1.1945189685735262|0.0341790226516087|5.13|151.0|69|3|anti-sense L1MC3_dup2414|chr3:129887675-129888670:+|1.1945189685735262|0.0341790226516087|5.13|151.0|69|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.7344970703125 2 530.252046 1058.48954 -0.16388 -8.6899E-05 -0.59691 -0.00031651 -0.76079 -0.00040341 530.2516401745112 14.55 0.39705 17.937 17.723 18.12 3.3871 50 33 2 0 0 0 0.82752 2 581 581;611 5.2307 0 1 47132 58101 11321 36675 36694 66773;66774 66773 -0.037366733489079706 YTHKCTFHTQ 10 Unmodified _YTHKCTFHTQ_ 0 0 0 REV__L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|78|2|sense REV__L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|78|2|sense MSMS UPN47_class_I_Rep_1 2 633.2880249023438 2 633.290222 1264.56589 NaN NaN NaN NaN NaN NaN NaN 38.91 1 42.576 42.076 43.076 3.6652 0 0 0 0.53105 1 7551 7551 6.2058 1.8765 1 + 58102 24256 36676 36695 66775 66775 -0.05580901519533654 YTHPRVEP 8 Unmodified _YTHPRVEP_ 0 0 0 REV__L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|71|3|sense REV__L1PA13_dup3164|chr6:20449618-20452332:-|4.1422507484293964|0.0373817669371424|6.79|151.0|71|3|sense MSMS UPN46_class_I_Rep_3 1 499.7568359375 2 499.756341 997.498129 NaN NaN NaN NaN NaN NaN NaN 96.223 1 96.223 95.723 96.723 0 0 0 0 0.40604 1 23391 23391 2.5775 0 1 + 58103 29095 36677 36696 66776 66776 -0.0007198338804528248 YTHVTPFII 9 Unmodified _YTHVTPFII_ 0 0 0 L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|92|3|anti-sense L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|92|3|anti-sense L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|92|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 546.2814331054688 2 545.800217 1089.58588 -0.0067242 -3.6701E-06 -0.75943 -0.0004145 -0.76616 -0.00041817 545.799967716459 32.929 0.36716 36.642 36.511 36.878 3.7131 47 27 2 0 0 0 0.10341 1 5804 5804 16.942 2.104 1 95207 58104 11845 36678 36697 66777 66777 0.044672174827155686 YTHVTPFII 9 Unmodified _YTHVTPFII_ 0 0 0 L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|92|3|anti-sense L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|92|3|anti-sense L1MCa_dup949|chr2:174365835-174367163:+|2.786247741591414|0.0590560365607234|5.56|151.0|92|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 545.7127075195312 2 545.800217 1089.58588 -0.14258 -7.7819E-05 -0.49971 -0.00027274 -0.64229 -0.00035056 545.8000052620744 33.494 0.75753 36.769 36.603 37.361 3.2748 79 54 2 0 0 0 0.41259 1 6078 6078 7.2892 0.18751 1 70560 58105 11845 36678 36697 66778 66778 0.044672174827155686 YTHYRFRM 8 Unmodified _YTHYRFRM_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1 ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MSMS UPN48_class_I_Rep_1 5 587.2822265625 2 587.284743 1172.55493 NaN NaN NaN NaN NaN NaN NaN 28.303 1 31.86 31.36 32.36 3.5571 0 0 0 0.40746 1 3765 3765 0.69038 0 1 58106 3440 36679 36698 66779 66779 -0.024442591032084238 YTIAPWQVI 9 Unmodified _YTIAPWQVI_ 0 0 0 REV__KDM3A|p.E1039Rfs*8|1|0.15|ENSG00000115548|chr2:86484956-86484957|-/A|frameshift_variant REV__KDM3A|p.E1039Rfs*8|1|0.15|ENSG00000115548|chr2:86484956-86484957|-/A|frameshift_variant MULTI-SECPEP UPN47_class_I_Rep_1 2 546.2813110351562 2 545.800217 1089.58588 -0.0058274 -3.1806E-06 -0.8585 -0.00046857 -0.86433 -0.00047175 545.7996828370126 33.24 0.2048 36.938 36.864 37.068 3.6983 17 13 2 0 0 0 0.12034 1 5839 5839 7.2892 0.56607 1 61374 + 58107 18571 36680 36699 66780 66780 0.044672174827155686 YTIEVLRR 8 Unmodified _YTIEVLRR_ 0 0 0 L1PA16_dup6008|chr7:47338613-47339028:-|1.4778642236585806|0.049672582768675|4.89|150.0|7|2|sense L1PA16_dup6008|chr7:47338613-47339028:-|1.4778642236585806|0.049672582768675|4.89|150.0|7|2|sense L1PA16_dup6008|chr7:47338613-47339028:-|1.4778642236585806|0.049672582768675|4.89|150.0|7|2|sense MSMS UPN47_class_I_Rep_1 2 525.309814453125 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 97.688 1 101.47 100.97 101.97 3.7861 0 0 0 0.40746 1 24202 24202 0.69038 0 1 58108 14101 36681 36700 66781 66781 0.08057138088520333 YTIFGTTYNGT 11 Unmodified _YTIFGTTYNGT_ 0 0 0 MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|55|2|anti-sense MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|55|2|anti-sense MER63D_dup996|chr10:7853057-7854085:+|1.0795379011025883|0.0273594488585944|5.3|151.0|55|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 621.3135375976562 2 619.290411 1236.56627 0.44484 0.00027549 -0.90311 -0.00055929 -0.45827 -0.0002838 619.2882934725876 61.299 1.7177 64.68 64.305 66.022 3.3815 418 122 6 0 0 0 0.4608 1 14321 14321 8.7454 0.83525 1 2777200 58109 16169 36682 36701 66782 66782 -0.04255203318734857 YTIFWELY 8 Unmodified _YTIFWELY_ 0 0 0 L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|106|3|anti-sense L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|106|3|anti-sense L1MC1_dup1190|chr2:24233969-24235663:+|1.1294735907614482|0.1490323009517801|2.92|151.0|106|3|anti-sense MSMS UPN48_class_I_Rep_1 5 567.7694091796875 2 567.778951 1133.54335 NaN NaN NaN NaN NaN NaN NaN 63.713 1 67.171 66.671 67.671 3.4578 0 0 0 0.39624 1 14365 14365 9.3474 2.0582 1 58110 11107 36683 36702 66783 66783 -0.018081776455119325 YTIGMSLSLL 10 Unmodified _YTIGMSLSLL_ 0 0 0 REV__nc|ENSG00000104755|Q99965-2|ADAM2 REV__nc|ENSG00000104755|Q99965-2|ADAM2 MULTI-MSMS UPN48_class_I_Rep_1 5 549.2994995117188 2 549.299193 1096.58383 0.50561 0.00027773 0.79058 0.00043426 1.2962 0.00071199 549.8011362393587 74.89 0.14067 78.38 78.295 78.436 3.49 17 11 3 0 0 0 0.52562 1 17730 17730 8.7454 0 1 99454 + 58111 18264 36684 36703 66784 66784 0.03940420682602053 YTIGMSLSLL 10 Unmodified _YTIGMSLSLL_ 0 0 0 REV__nc|ENSG00000104755|Q99965-2|ADAM2 REV__nc|ENSG00000104755|Q99965-2|ADAM2 MULTI-MSMS UPN48_class_I_Rep_2 6 549.299072265625 2 549.299193 1096.58383 0.48263 0.00026511 0.69098 0.00037956 1.1736 0.00064466 549.299464985522 74.706 0.15464 78.296 78.217 78.372 3.59 25 18 2 0 0 0 0.41718 1 17595 17595 18.146 0 1 74297 + 58112 18264 36684 36703 66785 66785 0.03940420682602053 YTIGMSLSLL 10 Unmodified _YTIGMSLSLL_ 0 0 0 REV__nc|ENSG00000104755|Q99965-2|ADAM2 REV__nc|ENSG00000104755|Q99965-2|ADAM2 MULTI-MSMS UPN48_class_I_Rep_3 7 549.299560546875 2 549.299193 1096.58383 0.47663 0.00026181 0.9898 0.0005437 1.4664 0.00080551 549.2998251270857 74.779 0.27512 78.345 78.144 78.419 3.5659 40 31 2 0 0 0 0.48573 1 17536 17536 13.042 0 1 82022 + 58113 18264 36684 36703 66786 66786 0.03940420682602053 YTIIVYIVN 9 Unmodified _YTIIVYIVN_ 0 0 0 REV__L1MB8_dup12912|chr14:74107853-74109202:-|1.203034762829189|0.0380347453807136|4.98|150.0|45|3|sense REV__L1MB8_dup12912|chr14:74107853-74109202:-|1.203034762829189|0.0380347453807136|4.98|150.0|45|3|sense MSMS UPN47_class_I_Rep_2 3 549.3189697265625 2 549.3157 1096.61685 NaN NaN NaN NaN NaN NaN NaN 91.973 1 95.439 94.939 95.939 3.4652 0 0 0 0.39518 1 22748 22748 1.8442 0 1 + 58114 26362 36685 36704 66787 66787 0.07240370796944262 YTIIYTFV 8 Unmodified _YTIIYTFV_ 0 0 0 REV__Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|7|1|sense REV__Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|7|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 510.2752685546875 2 510.276044 1018.53753 0.27412 0.00013988 -0.70913 -0.00036185 -0.43501 -0.00022198 510.27570243844536 70.916 0.4206 70.916 70.611 71.031 0 59 44 2 0 0 0 0.82752 1 16279 16279 20.454 0.039092 1 253160 + 58115 32747 36686 36705 66788 66788 0.029007238428107485 YTIIYTFV 8 Unmodified _YTIIYTFV_ 0 0 0 REV__Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|7|1|sense REV__Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 510.2758483886719 2 510.276044 1018.53753 0.064291 3.2806E-05 -0.36585 -0.00018668 -0.30155 -0.00015388 510.27573138957035 66.41 0.85909 69.669 69.277 70.136 3.2588 137 55 3 0 0 0 0.82752 3 16058 15862;16019;16058 26.884 1.1966 1 445170 + 58116 32747 36686 36705 66789;66790;66791 66791 0.029007238428107485 YTIIYTFV 8 Unmodified _YTIIYTFV_ 0 0 0 REV__Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|7|1|sense REV__Tigger3b_dup3616|chr9:88403890-88404633:-|1.155026456080119|0.0367847620194981|4.97|151.0|7|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 510.27569580078125 2 510.276044 1018.53753 0.26098 0.00013317 -0.67804 -0.00034599 -0.41706 -0.00021282 510.27561068836405 67.872 0.26003 71.064 70.876 71.136 3.1914 31 22 2 0 0 0 0.82752 1 16426 16426 15.847 1.0089 1 85340 + 58117 32747 36686 36705 66792 66792 0.029007238428107485 YTIKDALGL 9 Unmodified _YTIKDALGL_ 0 0 0 ENSG00000198727|ENST00000361789|MT-CYB ENSG00000198727|ENST00000361789|MT-CYB ENSG00000198727|ENST00000361789|MT-CYB MULTI-MSMS UPN48_class_I_Rep_1 5 497.28448486328125 2 497.2844 992.554247 0.31614 0.00015721 0.086264 4.2898E-05 0.4024 0.00020011 497.2843790655496 63.073 0.72302 66.535 66.131 66.854 3.4625 91 49 3 0 0 0 0.066364 1 14216 14216 41.956 3.78 1 291240 58118 5450 36687 36706 66793 66793 0.05767224728754172 YTIKDALGL 9 Unmodified _YTIKDALGL_ 0 0 0 ENSG00000198727|ENST00000361789|MT-CYB ENSG00000198727|ENST00000361789|MT-CYB ENSG00000198727|ENST00000361789|MT-CYB MULTI-MSMS UPN48_class_I_Rep_2 6 497.28460693359375 2 497.2844 992.554247 0.32917 0.00016369 0.049488 2.461E-05 0.37865 0.0001883 497.2843308842138 62.961 0.63013 66.435 66.077 66.708 3.4738 95 44 3 0 0 0 0.066364 4 14169 14042;14089;14127;14169 41.956 7.3464 1 368720 58119 5450 36687 36706 66794;66795;66796;66797 66797 0.05767224728754172 YTIKDALGL 9 Unmodified _YTIKDALGL_ 0 0 0 ENSG00000198727|ENST00000361789|MT-CYB ENSG00000198727|ENST00000361789|MT-CYB ENSG00000198727|ENST00000361789|MT-CYB MULTI-MSMS UPN48_class_I_Rep_3 7 497.28436279296875 2 497.2844 992.554247 0.26767 0.00013311 0.08149 4.0524E-05 0.34916 0.00017363 497.2843805452595 62.687 0.64832 66.197 65.973 66.621 3.5104 81 44 2 0 0 0 0.095207 3 13955 13955;14035;14041 34.932 7.3033 1 333470 58120 5450 36687 36706 66798;66799;66800 66798 0.05767224728754172 YTIKVTLQI 9 Unmodified _YTIKVTLQI_ 0 0 0 L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|54|3|sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|54|3|sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|54|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 539.3284912109375 2 539.828975 1077.6434 0.37169 0.00020065 -0.057008 -3.0775E-05 0.31468 0.00016987 539.8289400567509 45.971 0.89861 49.487 49.115 50.014 3.5162 90 60 2 0 0 0 0.12157 1 8862 8862 6.2058 2.2614 1 177750 58121 12923 36688 36707 66801 66801 0.10768059688280118 YTIKVTLQI 9 Unmodified _YTIKVTLQI_ 0 0 0 L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|54|3|sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|54|3|sense L1ME4b_dup2887|chr2:177277685-177279038:-|1.0943992934207951|0.0896176281216363|3.61|150.0|54|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 539.828975 1077.6434 0.38492 0.00020779 -0.1428 -7.7088E-05 0.24212 0.0001307 539.8289216638616 45.586 0.75238 49.344 49.111 49.863 3.7579 -0.098357 -0.00010954 NaN 13.042 119 56 3 NaN NaN NaN NaN 0 NaN NaN 0 212150 58122 12923 36688 36707 0.10768059688280118 YTILGFPF 8 Unmodified _YTILGFPF_ 0 0 0 L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|311|2|anti-sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|311|2|anti-sense L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|311|2|anti-sense MSMS UPN47_class_I_Rep_2 3 479.2354431152344 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 26.423 1 29.917 29.417 30.417 3.4945 0 0 0 0.40738 1 3820 3820 0.79363 0 1 58123 15223 36689 36708 66802 66802 0.02076472016904063 YTILGRPWV 9 Unmodified _YTILGRPWV_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MSMS UPN47_class_I_Rep_3 4 553.216064453125 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 20.785 1 24.135 23.635 24.635 3.3496 0 0 0 0.4007 1 2209 2209 0.52476 0 1 + 58124 18288 36690 36709 66803 66803 0.06510326093894037 YTILLSRP 8 Unmodified _YTILLSRP_ 0 0 0 ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron ENSG00000178605.13,GTPBP6,chrX,-,I3.1,315021,315228|24|29.12|1|intron MSMS UPN47_class_I_Rep_3 4 481.7785949707031 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 22.049 1 25.398 24.898 25.898 3.3496 0 0 0 0.40604 1 2573 2573 2.5775 0 1 58125 4827 36691 36710 66804 66804 0.07734948311235712 YTISLINGL 9 Unmodified _YTISLINGL_ 0 0 0 REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|70|1|anti-sense REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 497.28448486328125 2 497.2844 992.554247 0.31614 0.00015721 0.086264 4.2898E-05 0.4024 0.00020011 497.2843790655496 63.073 0.72302 66.535 66.131 66.854 3.4625 91 49 3 0 0 0 0.15547 3 14135 14090;14135;14176 24.991 0 1 291240 + 58126 30950 36692 36711 66805;66806;66807 66806 0.057672247287769096 YTISLINGL 9 Unmodified _YTISLINGL_ 0 0 0 REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|70|1|anti-sense REV__LTR49-int_dup304|chr2:230516091-230517479:-|1.9155582135653364|0.063591896607497|4.91|150.0|70|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 497.28485107421875 2 497.2844 992.554247 0.26767 0.00013311 0.08149 4.0524E-05 0.34916 0.00017363 497.2843805452595 62.687 0.64832 66.197 65.973 66.621 3.5104 81 44 2 0 0 0 0.21414 2 13998 13915;13998 19.362 0 1 333470 + 58127 30950 36692 36711 66808;66809 66809 0.057672247287769096 YTKALKLLDY 10 Unmodified _YTKALKLLDY_ 0 0 0 nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11 nc|ENSG00000168538|Q7Z392-4|TRAPPC11 nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS UPN48_class_I_Rep_1 5 614.314453125 2 614.352814 1226.69108 NaN NaN NaN NaN NaN NaN NaN 70.116 1 73.576 73.076 74.076 3.4598 0 0 0 0.53105 1 16316 16316 1.1933 0.12188 1 58128 4379 36693 36712 66810 66810 0.08679713888477636 YTKEILLF 8 Unmodified _YTKEILLF_ 0 0 0 REV__ENST00000484988.2_1_1:67081779-67091584:+|nuORF REV__ENST00000484988.2_1_1:67081779-67091584:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.7969970703125 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 89.079 1 92.532 92.032 93.032 3.4525 0 0 0 0.40738 1 22137 22137 0.79363 0 1 + 58129 22596 36694 36713 66811 66811 0.067966992511856 YTKEKRTPIR 10 Unmodified _YTKEKRTPIR_ 0 0 0 REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|23|3|sense REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 646.3778076171875 2 646.377686 1290.74082 0.43786 0.00028302 -0.21719 -0.00014039 0.22067 0.00014264 646.3777788150404 93.831 1.6034 97.452 96.621 98.225 3.6208 270 194 2 0 0 0 0.55448 1 22671 22671 4.897 0.70751 1 411860 + 58130 24424 36695 36714 66812 66812 0.10707841617136182 YTKEKRTPIR 10 Unmodified _YTKEKRTPIR_ 0 0 0 REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|23|3|sense REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 646.377685546875 2 646.377686 1290.74082 0.43803 0.00028313 -0.69102 -0.00044666 -0.25299 -0.00016353 646.3772899523522 94.758 0.31998 98.374 98.221 98.541 3.6167 70 40 3 0 0 0 0.55448 1 22828 22828 4.897 0 1 261820 + 58131 24424 36695 36714 66813 66813 0.10707841617136182 YTKEKRTPIR 10 Unmodified _YTKEKRTPIR_ 0 0 0 REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|23|3|sense REV__L1M4_dup3367|chr3:47968121-47969044:+|1.0227141401479731|0.0137818087633498|6.21|151.0|23|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 646.3775024414062 2 646.377686 1290.74082 0.50115 0.00032393 -0.58408 -0.00037754 -0.082932 -5.3605E-05 646.3774580377727 94.686 0.62381 98.462 98.313 98.937 3.7761 127 87 2 0 0 0 0.55448 1 22535 22535 4.897 0 1 276570 + 58132 24424 36695 36714 66814 66814 0.10707841617136182 YTKFFKLFKII 11 Unmodified _YTKFFKLFKII_ 0 0 0 REV__L1ME2_dup12678|chr22:40614787-40615677:-|1.3611089698850556|0.0087492599540531|7.28|151.0|44|2|anti-sense REV__L1ME2_dup12678|chr22:40614787-40615677:-|1.3611089698850556|0.0087492599540531|7.28|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_2 6 483.29522705078125 3 483.295241 1446.86389 NaN NaN NaN NaN NaN NaN NaN 23.783 1 27.423 26.923 27.923 3.6397 0 0 0 0.38417 1 2651 2651 0.094841 0 1 + 58133 27831 36696 36715 66815 66815 0.15833705015688793 YTKFIKRK 8 Unmodified _YTKFIKRK_ 0 0 0 REV__L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|24|2|sense REV__L1MB3_dup6300|chr7:2188244-2189824:+|1.1808981152803928|0.1877023516641205|2.65|151.0|24|2|sense MSMS UPN48_class_I_Rep_2 6 542.3359985351562 2 542.337301 1082.66005 NaN NaN NaN NaN NaN NaN NaN 54.511 1 58.093 57.593 58.593 3.5817 0 0 0 0.40604 1 11529 11529 2.5775 0 1 + 58134 25903 36697 36716 66816 66816 0.12202605364882402 YTKFLKYY 8 Unmodified _YTKFLKYY_ 0 0 0 Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_1 2 563.3040771484375 2 563.302593 1124.59063 NaN NaN NaN NaN NaN NaN NaN 96.422 1 100.2 99.698 100.7 3.7767 0 0 0 0.40625 1 23905 23905 2.3027 0 1 58135 33383 36698 36717 66817 66817 0.03332101625483119 YTKFLKYY 8 Unmodified _YTKFLKYY_ 0 0 0 Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense MSMS UPN47_class_I_Rep_2 3 563.3043212890625 2 563.302593 1124.59063 NaN NaN NaN NaN NaN NaN NaN 96.434 1 99.913 99.413 100.41 3.4791 0 0 0 0.40625 1 23695 23695 2.3027 0 1 58136 33383 36698 36717 66818 66818 0.03332101625483119 YTKFLKYY 8 Unmodified _YTKFLKYY_ 0 0 0 Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense Tigger3b_dup3063|chr7:152350377-152351514:-|1.492541106498173|0.0107665636728797|7.12|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_3 7 563.3043212890625 2 563.302593 1124.59063 NaN NaN NaN NaN NaN NaN NaN 96.179 1 100.09 99.587 100.59 3.9084 0 0 0 0.40625 1 22791 22791 2.3027 0 1 58137 33383 36698 36717 66819 66819 0.03332101625483119 YTKKKKDL 8 Unmodified _YTKKKKDL_ 0 0 0 L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|3|1|sense L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|3|1|sense L1MB8_dup5341|chr6:4885746-4889070:-|1.160180604486|0.0508022188545712|4.51|150.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 512.3136596679688 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 46.978 1 50.614 50.114 51.114 3.6363 0 0 0 0.40604 1 9171 9171 2.5775 0 1 58138 11017 36699 36718 66820 66820 0.10202906374036047 YTKKVGKAP 9 Unmodified _YTKKVGKAP_ 0 0 0 ENST00000503574.1_1_4:109543115-109543474:+|nuORF;ENSG00000109475|ENST00000394667|RPL34 ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENST00000503574.1_1_4:109543115-109543474:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 496.30010986328125 2 496.300384 990.586216 -0.34793 -0.00017268 -0.085114 -4.2242E-05 -0.43304 -0.00021492 496.3002362704698 13.157 0.62927 16.614 16.484 17.114 3.457 168 69 5 0 0 0 0.13244 3 278 246;278;312 27.629 16.805 1 631720 58139 7140 36700 36719 66821;66822;66823 66822 0.09054637202564209 YTKKVGKAP 9 Unmodified _YTKKVGKAP_ 0 0 0 ENST00000503574.1_1_4:109543115-109543474:+|nuORF;ENSG00000109475|ENST00000394667|RPL34 ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENST00000503574.1_1_4:109543115-109543474:+|nuORF MULTI-MSMS UPN47_class_I_Rep_2 3 496.30010986328125 2 496.300384 990.586216 -0.14369 -7.1312E-05 -0.28256 -0.00014024 -0.42625 -0.00021155 496.3001281223127 13.208 0.70559 16.596 16.482 17.187 3.388 166 80 4 0 0 0 0.052902 3 286 252;286;318 47.749 31.902 1 555420 58140 7140 36700 36719 66824;66825;66826 66825 0.09054637202564209 YTKKVGKAP 9 Unmodified _YTKKVGKAP_ 0 0 0 ENST00000503574.1_1_4:109543115-109543474:+|nuORF;ENSG00000109475|ENST00000394667|RPL34 ENST00000503574.1_1_4:109543115-109543474:+|nuORF ENST00000503574.1_1_4:109543115-109543474:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 496.30010986328125 2 496.300384 990.586216 -0.6617 -0.0003284 0.23492 0.00011659 -0.42678 -0.00021181 496.3003595184849 13.252 0.64936 16.626 16.479 17.128 3.3734 169 74 4 0 0 0 0.01093 3 286 254;286;313 69.338 34.936 1 458130 58141 7140 36700 36719 66827;66828;66829 66828 0.09054637202564209 YTKQRTNIKN 10 Unmodified _YTKQRTNIKN_ 0 0 0 L1PB1_dup357|chr1:107869654-107870642:-|1.2117612063933096|0.0289600291942765|5.39|151.0|1|1|sense L1PB1_dup357|chr1:107869654-107870642:-|1.2117612063933096|0.0289600291942765|5.39|151.0|1|1|sense L1PB1_dup357|chr1:107869654-107870642:-|1.2117612063933096|0.0289600291942765|5.39|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 633.369384765625 2 633.351668 1264.68878 NaN NaN NaN NaN NaN NaN NaN 91.458 1 91.458 90.958 91.958 0 0 0 0 0.53105 1 22094 22094 2.4985 0.21571 1 58142 15091 36701 36720 66830 66830 0.0670267820337358 YTKTHVYI 8 Unmodified _YTKTHVYI_ 0 0 0 REV__L1ME1_dup23357|chr12:132630729-132631446:+|1.2935472399549086|0.1625220853363215|2.99|151.0|11|2|sense REV__L1ME1_dup23357|chr12:132630729-132631446:+|1.2935472399549086|0.1625220853363215|2.99|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 512.7767944335938 2 512.776742 1023.53893 NaN NaN NaN NaN NaN NaN NaN 21.903 1 25.617 25.117 26.117 3.7144 0 0 0 0.40738 1 2145 2145 0.79363 0 1 + 58143 27436 36702 36721 66831 66831 0.028103579315711613 YTKWNKKRK 9 Unmodified _YTKWNKKRK_ 0 0 0 REV__L1PB3_dup904|chr4:152820800-152823498:+|1.5714630896241404|0.0579898872887638|4.76|151.0|44|2|sense REV__L1PB3_dup904|chr4:152820800-152823498:+|1.5714630896241404|0.0579898872887638|4.76|151.0|44|2|sense MSMS UPN48_class_I_Rep_2 6 626.3872680664062 2 626.369664 1250.72478 NaN NaN NaN NaN NaN NaN NaN 105.4 1 109.09 108.59 109.59 3.6901 0 0 0 0.39518 1 24932 24932 1.8442 0 1 + 58144 30570 36703 36722 66832 66832 0.10944180170872642 YTKYKNQF 8 Unmodified _YTKYKNQF_ 0 0 0 REV__L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|45|3|sense REV__L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|45|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 546.2807006835938 2 546.279649 1090.54475 0.61168 0.00033415 -0.6029 -0.00032935 0.0087886 4.801E-06 546.2797204743888 55.37 0.22768 58.926 58.724 58.952 3.5559 19 12 2 0 0 0 0.82752 1 11772 11772 12.532 0.89125 1 74853 + 58145 26392 36704 36723 66833 66833 0.003094564432331026 YTKYKNQF 8 Unmodified _YTKYKNQF_ 0 0 0 REV__L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|45|3|sense REV__L1MB8_dup1757|chr2:108825296-108827072:-|1.2031340944566606|0.1926501020135755|2.64|151.0|45|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 545.7880249023438 2 546.279649 1090.54475 0.34817 0.0001902 -1.0012 -0.00054694 -0.65304 -0.00035674 546.2791322398868 55.405 0.18203 58.96 58.864 59.046 3.5554 16 10 2 0 0 0 0.82752 1 11749 11749 8.5933 0.43775 1 86385 + 58146 26392 36704 36723 66834 66834 0.003094564432331026 YTKYYTKF 8 Unmodified _YTKYYTKF_ 0 0 0 REV__L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|40|3|sense REV__L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|40|3|sense MSMS UPN48_class_I_Rep_2 6 557.28271484375 2 557.2844 1112.55425 NaN NaN NaN NaN NaN NaN NaN 38.97 1 42.7 42.2 43.2 3.7297 0 0 0 0.40501 1 6859 6859 3.9444 0 1 + 58147 28409 36705 36724 66835 66835 0.002472247287414575 YTKYYTKF 8 Unmodified _YTKYYTKF_ 0 0 0 REV__L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|40|3|sense REV__L1MEc_dup17291|chr18:80122219-80123358:-|1.330720147485615|0.1135890166642627|3.55|151.0|40|3|sense MSMS UPN48_class_I_Rep_3 7 557.2826538085938 2 557.2844 1112.55425 NaN NaN NaN NaN NaN NaN NaN 38.659 1 42.318 41.818 42.818 3.6595 0 0 0 0.39436 1 6669 6669 10.074 1.3285 1 + 58148 28409 36705 36724 66836 66836 0.002472247287414575 YTLFFITF 8 Unmodified _YTLFFITF_ 0 0 0 REV__ENSG00000243729|ENST00000641768|OR5V1 REV__ENSG00000243729|ENST00000641768|OR5V1 MSMS UPN48_class_I_Rep_3 7 526.2780151367188 2 526.278586 1050.54262 NaN NaN NaN NaN NaN NaN NaN 73.317 1 76.855 76.355 77.355 3.5373 0 0 0 0.40404 1 17146 17146 5.2307 0 1 + 58149 21336 36706 36725 66837 66837 0.019370277054122198 YTLFFKFCF 9 Unmodified _YTLFFKFCF_ 0 0 0 L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 405.875 3 405.868423 1214.58344 -0.47383 -0.00019231 -2.9514 -0.0011979 -3.4253 -0.0013902 405.86736928949176 29.427 0.12346 33.185 33.1 33.223 3.7578 11 9 2 0 0 0 0.42411 1 4662 4662 6.6304 1.7334 1 32517 58150 13144 36707 36726 66838 66838 -0.015269542466057828 YTLFFKFCF 9 Unmodified _YTLFFKFCF_ 0 0 0 L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense L1MEc_dup8360|chr7:99894703-99896192:-|1.358191784949026|0.3165789469104265|2.1|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_2 3 405.8753662109375 3 405.868423 1214.58344 NaN NaN NaN NaN NaN NaN NaN 29.75 1 33.242 32.742 33.742 3.4923 0 0 0 0.31132 1 4808 4808 10.151 1.1743 1 58151 13144 36707 36726 66839 66839 -0.015269542466057828 YTLGEKDSLF 10 Unmodified _YTLGEKDSLF_ 0 0 0 L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|147|3|sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|147|3|sense L1MA4_dup4006|chr6:126134103-126138255:+|1.0854248714097154|0.4745494543816458|1.19|151.0|147|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.79443359375 2 586.795329 1171.5761 0.43778 0.00025689 0.51762 0.00030373 0.9554 0.00056062 586.7955956078745 53.574 0.83242 57.093 56.795 57.627 3.5192 137 60 3 0 0 0 0.44401 1 11394 11394 16.149 2.2431 1 382800 58152 9683 36708 36727 66840 66840 -0.0028201531333706953 YTLGLKLV 8 Unmodified _YTLGLKLV_ 0 0 0 REV__L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|17|2|sense REV__L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 453.7848815917969 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 48.422 1 52.104 51.604 52.604 3.6819 0 0 0 0.40746 1 10444 10444 0.69038 0 1 + 58153 28166 36709 36728 66841 66841 0.1020473394231658 YTLGLKLV 8 Unmodified _YTLGLKLV_ 0 0 0 REV__L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|17|2|sense REV__L1ME3F_dup1425|chr5:37033868-37034823:+|1.1390546824687031|0.0490460126675264|4.54|150.0|17|2|sense MSMS UPN47_class_I_Rep_1 2 453.78521728515625 2 453.786579 905.558604 NaN NaN NaN NaN NaN NaN NaN 49.506 1 53.165 52.665 53.665 3.6592 0 0 0 0.40746 1 10774 10774 0.69038 0 1 + 58154 28166 36709 36728 66842 66842 0.1020473394231658 YTLHPVSPIF 10 Unmodified _YTLHPVSPIF_ 0 0 0 L1MC3_dup11028|chr15:65783125-65784553:+|6.773683610189507|0.0331232109083987|7.68|151.0|89|3|anti-sense L1MC3_dup11028|chr15:65783125-65784553:+|6.773683610189507|0.0331232109083987|7.68|151.0|89|3|anti-sense L1MC3_dup11028|chr15:65783125-65784553:+|6.773683610189507|0.0331232109083987|7.68|151.0|89|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.3193969726562 2 587.318774 1172.623 0.4333 0.00025448 0.2886 0.0001695 0.7219 0.00042399 587.3188957883632 52.968 0.8721 56.487 56.045 56.917 3.5192 132 64 3 0 0 0 0.54466 1 11174 11174 6.2058 1.8765 1 339170 58155 11294 36710 36729 66843 66843 0.043588890284581794 YTLIGKRKLA 10 Unmodified _YTLIGKRKLA_ 0 0 0 REV__L1MB4_dup671|chr2:37153516-37154013:-|1.0324357882733652|0.0336665829579755|4.94|151.0|19|3|sense REV__L1MB4_dup671|chr2:37153516-37154013:-|1.0324357882733652|0.0336665829579755|4.94|151.0|19|3|sense MSMS UPN47_class_I_Rep_3 4 581.7048950195312 2 581.868966 1161.72338 NaN NaN NaN NaN NaN NaN NaN 116.34 1 119.8 119.3 120.3 3.462 0 0 0 0.53105 1 28626 28626 0 0 1 + 58156 26009 36711 36730 66844 66844 0.14898546082145003 YTLIHFNL 8 Unmodified _YTLIHFNL_ 0 0 0 REV__L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|165|3|anti-sense REV__L1M4_dup511|chr1:91003686-91006258:+|4.119344482494622|0.0808199488146593|5.67|151.0|165|3|anti-sense MSMS UPN47_class_I_Rep_1 2 510.77764892578125 2 510.779285 1019.54402 NaN NaN NaN NaN NaN NaN NaN 67.147 1 70.509 70.009 71.009 3.3611 0 0 0 0.40157 1 16129 16129 7.2892 0 1 + 58157 24436 36712 36731 66845 66845 0.03502661794186679 YTLIPLYL 8 Unmodified _YTLIPLYL_ 0 0 0 L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|122|2|anti-sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|122|2|anti-sense L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|122|2|anti-sense MSMS UPN48_class_I_Rep_3 7 498.2926025390625 2 498.294236 994.57392 NaN NaN NaN NaN NaN NaN NaN 53.495 1 57.079 56.579 57.579 3.5836 0 0 0 0.38547 1 11156 11156 13.508 0 1 58158 10042 36713 36732 66846 66846 0.07641600739509613 YTLIVLYHI 9 Unmodified _YTLIVLYHI_ 0 0 0 ENST00000314664.11_2_10:51840680-51843898:+|nuORF ENST00000314664.11_2_10:51840680-51843898:+|nuORF ENST00000314664.11_2_10:51840680-51843898:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_3 4 567.3304443359375 2 567.831517 1133.64848 0.48053 0.00027286 -0.049887 -2.8327E-05 0.43064 0.00024453 567.8314470053361 84.454 0.31505 87.815 87.69 88.006 3.3615 57 38 2 0 0 0 0.12444 1 21235 21235 2.0598 0 1 212160 58159 6127 36714 36733 66847 66847 0.08700363550883594 YTLLFLCIA 9 Unmodified _YTLLFLCIA_ 0 0 0 L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|113|1|anti-sense L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|113|1|anti-sense L1M4a2_dup515|chr4:139997153-139999610:-|4.328664015069721|0.0296120122642894|7.19|151.0|113|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 528.7935791015625 2 528.793546 1055.57254 0.37663 0.00019916 -0.74693 -0.00039497 -0.3703 -0.00019581 528.7931367806307 31.228 0.46862 34.929 34.664 35.132 3.7015 70 50 2 0 0 0 0.46434 1 4614 4614 4.3292 0 1 81339 58160 8980 36715 36734 66848 66848 0.0469764337910874 YTLLPHILL 9 Unmodified _YTLLPHILL_ 0 0 0 L1MD3_dup935|chr3:53296670-53297281:-|1.570864784851442|0.0724421951793125|4.44|151.0|11|2|sense L1MD3_dup935|chr3:53296670-53297281:-|1.570864784851442|0.0724421951793125|4.44|151.0|11|2|sense L1MD3_dup935|chr3:53296670-53297281:-|1.570864784851442|0.0724421951793125|4.44|151.0|11|2|sense MSMS UPN48_class_I_Rep_3 7 541.83447265625 2 541.83406 1081.65357 NaN NaN NaN NaN NaN NaN NaN 54.352 1 57.922 57.422 58.422 3.5694 0 0 0 0.39326 1 11418 11418 2.3027 0 1 58161 12084 36716 36735 66849 66849 0.1160066741351784 YTLPVLYI 8 Unmodified _YTLPVLYI_ 0 0 0 Tigger1_dup1445|chr2:112245928-112247235:+|1.47168953760782|0.4003742257264498|1.88|151.0|15|2|sense Tigger1_dup1445|chr2:112245928-112247235:+|1.47168953760782|0.4003742257264498|1.88|151.0|15|2|sense Tigger1_dup1445|chr2:112245928-112247235:+|1.47168953760782|0.4003742257264498|1.88|151.0|15|2|sense MSMS UPN48_class_I_Rep_2 6 491.2857666015625 2 491.286411 980.55827 NaN NaN NaN NaN NaN NaN NaN 77.532 1 81.144 80.644 81.644 3.6116 0 0 0 0.40738 1 18355 18355 0.79363 0 1 58162 33035 36717 36736 66850 66850 0.06721314222454566 YTLQKDEIY 9 Unmodified _YTLQKDEIY_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|30|3|sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|30|3|sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 587.2974853515625 2 586.795329 1171.5761 0.55455 0.00032541 0.4903 0.00028771 1.0448 0.00061311 586.7955963393028 53.508 0.7746 57.118 56.783 57.558 3.6098 119 55 3 0 0 0 0.10568 1 11280 11280 32.786 6.5175 1 351900 58163 10870 36718 36737 66851 66851 -0.0028201531331433216 YTLQKDEIY 9 Unmodified _YTLQKDEIY_ 0 0 0 L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|30|3|sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|30|3|sense L1MB7_dup7531|chr6:37838303-37839182:-|3.493716540341966|0.0266276269584573|7.04|151.0|30|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.7959594726562 2 586.795329 1171.5761 0.35723 0.00020962 0.62274 0.00036542 0.97997 0.00057504 586.7956066654069 53.532 0.83696 57.116 56.8 57.637 3.5836 135 64 3 0 0 0 0.15122 2 11232 11232;11271 25.399 3.8623 1 355920 58164 10870 36718 36737 66852;66853 66852 -0.0028201531331433216 YTLRRRAP 8 Unmodified _YTLRRRAP_ 0 0 0 REV__ENST00000598446.1_1_19:52552225-52552432:-|nuORF REV__ENST00000598446.1_1_19:52552225-52552432:-|nuORF MSMS UPN47_class_I_Rep_2 3 516.8062744140625 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 78.698 1 82.041 81.541 82.541 3.3428 0 0 0 0.40746 1 19559 19559 0.69038 0 1 + 58165 23202 36719 36738 66854 66854 0.08431093385456734 YTLRRRAP 8 Unmodified _YTLRRRAP_ 0 0 0 REV__ENST00000598446.1_1_19:52552225-52552432:-|nuORF REV__ENST00000598446.1_1_19:52552225-52552432:-|nuORF MSMS UPN48_class_I_Rep_1 5 516.7953491210938 2 516.8067 1031.59885 NaN NaN NaN NaN NaN NaN NaN 77.228 1 80.739 80.239 81.239 3.5102 0 0 0 0.40746 1 18369 18369 0.69038 0 1 + 58166 23202 36719 36738 66855 66855 0.08431093385456734 YTLSGSITSFP 11 Unmodified _YTLSGSITSFP_ 0 0 0 REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|36|2|sense REV__L1MB8_dup3257|chr3:141593836-141595610:+|3.824258548260312|0.16775660049773|4.51|151.0|36|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 587.2966918945312 2 586.795329 1171.5761 0.43778 0.00025689 0.51762 0.00030373 0.9554 0.00056062 586.7955956078745 53.574 0.83242 57.093 56.795 57.627 3.5192 137 60 3 0 0 0 0.23238 1 11291 11291 38.176 5.3899 1 382800 + 58167 26408 36720 36739 66856 66856 -0.0028201531333706953 YTLSNNFQF 9 Unmodified _YTLSNNFQF_ 0 0 0 L1MB4_dup5034|chrX:110041998-110042898:-|1.0707507691956266|0.0260541897892184|5.36|150.0|39|1|anti-sense L1MB4_dup5034|chrX:110041998-110042898:-|1.0707507691956266|0.0260541897892184|5.36|150.0|39|1|anti-sense L1MB4_dup5034|chrX:110041998-110042898:-|1.0707507691956266|0.0260541897892184|5.36|150.0|39|1|anti-sense MSMS UPN48_class_I_Rep_3 7 567.2666015625 2 567.266739 1132.51892 NaN NaN NaN NaN NaN NaN NaN 63.302 1 66.811 66.311 67.311 3.5091 0 0 0 0.31276 1 14141 14141 10.074 2.1638 1 58168 10529 36721 36740 66857 66857 -0.042034377990376015 YTLSSAVPFTS 11 Unmodified _YTLSSAVPFTS_ 0 0 0 REV__L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|120|2|anti-sense REV__L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|120|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 586.7953491210938 2 586.795329 1171.5761 0.43778 0.00025689 0.51762 0.00030373 0.9554 0.00056062 586.7955956078745 53.574 0.83242 57.093 56.795 57.627 3.5192 137 60 3 0 0 0 0.2836 3 11209 11209;11250;11330 32.786 0 1 382800 + 58169 26925 36722 36741 66858;66859;66860 66858 -0.0028201531331433216 YTLSSAVPFTS 11 Unmodified _YTLSSAVPFTS_ 0 0 0 REV__L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|120|2|anti-sense REV__L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|120|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 586.7951049804688 2 586.795329 1171.5761 0.55455 0.00032541 0.4903 0.00028771 1.0448 0.00061311 586.7955963393028 53.508 0.7746 57.118 56.783 57.558 3.6098 119 55 3 0 0 0 0.31099 4 11198 11184;11198;11238;11320 32.786 0 1 351900 + 58170 26925 36722 36741 66861;66862;66863;66864 66862 -0.0028201531331433216 YTLSSAVPFTS 11 Unmodified _YTLSSAVPFTS_ 0 0 0 REV__L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|120|2|anti-sense REV__L1MC4_dup5273|chr3:142529180-142531228:-|3.999222792551637|0.1323086294368693|4.92|151.0|120|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 586.7960815429688 2 586.795329 1171.5761 0.35723 0.00020962 0.62274 0.00036542 0.97997 0.00057504 586.7956066654069 53.532 0.83696 57.116 56.8 57.637 3.5836 135 64 3 0 0 0 0.31099 2 11196 11154;11196 32.786 0 1 355920 + 58171 26925 36722 36741 66865;66866 66866 -0.0028201531331433216 YTLSYALLDN 10 Unmodified _YTLSYALLDN_ 0 0 0 MLT1E2_dup1236|chr5:38976875-38977388:+|1.186827389852816|0.0546049804157398|4.44|151.0|31|3|anti-sense MLT1E2_dup1236|chr5:38976875-38977388:+|1.186827389852816|0.0546049804157398|4.44|151.0|31|3|anti-sense MLT1E2_dup1236|chr5:38976875-38977388:+|1.186827389852816|0.0546049804157398|4.44|151.0|31|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 587.3203125 2 586.795329 1171.5761 0.35723 0.00020962 0.62274 0.00036542 0.97997 0.00057504 586.7956066654069 53.532 0.83696 57.116 56.8 57.637 3.5836 135 64 3 0 0 0 0.32646 1 11103 11103 26.268 0 1 355920 58172 16369 36723 36742 66867 66867 -0.0028201531331433216 YTLVLTPVL 9 Unmodified _YTLVLTPVL_ 0 0 0 HERVK11-int_dup247|chr14:90951502-90953100:+|1.05465125592674|0.0196151267213221|5.75|151.0|5|1|sense HERVK11-int_dup247|chr14:90951502-90953100:+|1.05465125592674|0.0196151267213221|5.75|151.0|5|1|sense HERVK11-int_dup247|chr14:90951502-90953100:+|1.05465125592674|0.0196151267213221|5.75|151.0|5|1|sense MSMS UPN47_class_I_Rep_1 2 509.8037414550781 2 509.812793 1017.61103 NaN NaN NaN NaN NaN NaN NaN 78.817 1 82.263 81.763 82.763 3.4456 0 0 0 0.4029 1 19609 19609 0 0 1 58173 8262 36724 36743 66868 66868 0.10293272285264266 YTLYKKEEE 9 Unmodified _YTLYKKEEE_ 0 0 0 nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 MSMS UPN48_class_I_Rep_1 5 601.80322265625 2 601.800611 1201.58667 NaN NaN NaN NaN NaN NaN NaN 43.198 1 46.709 46.209 47.209 3.5103 0 0 0 0.39036 1 8081 8081 2.9952 0 1 58174 5296 36725 36744 66869 66869 -0.006060326588794851 YTNAKVKF 8 Unmodified _YTNAKVKF_ 0 0 0 HUERS-P1-int_dup255|chrX:9667258-9669295:+|2.392559761208181|0.171207884212902|3.8|151.0|55|3|sense HUERS-P1-int_dup255|chrX:9667258-9669295:+|2.392559761208181|0.171207884212902|3.8|151.0|55|3|sense HUERS-P1-int_dup255|chrX:9667258-9669295:+|2.392559761208181|0.171207884212902|3.8|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 485.7697448730469 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 93.818 1 97.439 96.939 97.939 3.6208 0 0 0 0.40746 1 22560 22560 0.69038 0 1 58175 8440 36726 36745 66870 66870 0.0423837527713431 YTNDFRLVY 9 Unmodified _YTNDFRLVY_ 0 0 0 REV__nc|ENSG00000100003|O76054-5|SEC14L2 REV__nc|ENSG00000100003|O76054-5|SEC14L2 MULTI-MSMS UPN47_class_I_Rep_1 2 595.7957763671875 2 595.795663 1189.57677 0.34053 0.00020289 0.36824 0.00021939 0.70877 0.00042228 595.7955393120423 54.256 0.99496 57.757 57.421 58.416 3.5014 108 54 3 0 0 0 0.35081 5 12204 12155;12204;12295;12348;12381 10.824 0 1 330590 + 58176 18083 36727 36746 66871;66872;66873;66874;66875 66872 -0.010431758736103802 YTNDFRLVY 9 Unmodified _YTNDFRLVY_ 0 0 0 REV__nc|ENSG00000100003|O76054-5|SEC14L2 REV__nc|ENSG00000100003|O76054-5|SEC14L2 MULTI-MSMS UPN47_class_I_Rep_2 3 595.7958374023438 2 595.795663 1189.57677 0.51736 0.00030824 0.45216 0.0002694 0.96952 0.00057764 595.7954312263329 54.546 0.82039 57.865 57.49 58.311 3.3187 94 41 3 0 0 0 0.42249 3 12355 12355;12400;12459 6.7232 0 1 331180 + 58177 18083 36727 36746 66876;66877;66878 66876 -0.010431758736103802 YTNDFRLVY 9 Unmodified _YTNDFRLVY_ 0 0 0 REV__nc|ENSG00000100003|O76054-5|SEC14L2 REV__nc|ENSG00000100003|O76054-5|SEC14L2 MULTI-MSMS UPN47_class_I_Rep_3 4 595.7957153320312 2 595.795663 1189.57677 0.44811 0.00026698 0.37715 0.0002247 0.82525 0.00049168 595.7955068177259 54.75 1.156 57.936 57.538 58.694 3.1856 124 66 3 0 0 0 0.35081 2 12469 12375;12469 10.824 6.7232 1 243880 + 58178 18083 36727 36746 66879;66880 66880 -0.010431758736103802 YTNDSVWM 8 Unmodified _YTNDSVWM_ 0 0 0 HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|3|1|sense;HERVK11-int_dup110|chr8:12533058-12534300:-|1.6740838762624883|0.106309489326365|3.98|148.0|3|1|sense;HERVK11-int_dup28|chr2:63993976-63995162:+|1.213423336986982|0.0304710179823928|5.32|151.0|27|3|sense HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|3|1|sense HERVK11-int_dup107|chr8:8131384-8132626:+|2.556371324562989|0.208741982905712|3.61|149.0|3|1|sense MSMS UPN48_class_I_Rep_3 7 508.2114562988281 2 508.213117 1014.41168 NaN NaN NaN NaN NaN NaN NaN 36.796 1 40.459 39.959 40.959 3.663 0 0 0 0.40625 1 6130 6130 2.3027 0 1 58179 8258 36728 36747 66881 66881 -0.09494731004929235 YTNGKKLLR 9 Unmodified _YTNGKKLLR_ 0 0 0 REV__L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|37|1|sense REV__L1PA15_dup1049|chr2:184880939-184885561:+|1.3338306690981092|0.010344001439106|7.01|142.0|37|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 546.8294677734375 2 546.82984 1091.64513 0.38167 0.00020871 -0.34346 -0.00018782 0.03821 2.0895E-05 546.8296180930956 45.894 0.86408 49.531 49.127 49.991 3.6369 89 61 2 0 0 0 0.46869 1 8888 8888 3.9444 0.3479 1 163750 + 58180 29178 36729 36748 66882 66882 0.10297113496881138 YTNGQEAHEK 10 Unmodified _YTNGQEAHEK_ 0 0 0 L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|1|1|sense L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|1|1|sense L1MB7_dup11705|chrX:20254708-20255490:+|1.9654662770646616|0.0167969914639839|6.87|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 588.767822265625 2 588.767634 1175.52072 NaN NaN NaN NaN NaN NaN NaN 14.885 1 14.885 14.385 15.385 0 0 0 0 0.53105 1 745 745 0 0 1 58181 10686 36730 36749 66883 66883 -0.0600242878113022 YTNILFESF 9 Unmodified _YTNILFESF_ 0 0 0 REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L MSMS UPN48_class_I_Rep_1 5 567.27978515625 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 63.982 1 67.439 66.939 67.939 3.4578 0 0 0 0.36505 1 14447 14447 7.2892 0 1 + 58182 19881 36731 36750 66884 66884 -0.016893829964601537 YTNILFESF 9 Unmodified _YTNILFESF_ 0 0 0 REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L MSMS UPN48_class_I_Rep_2 6 567.2802734375 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 63.875 1 67.35 66.85 67.85 3.4743 0 0 0 0.2408 1 14395 14395 13.906 0 1 + 58183 19881 36731 36750 66885 66885 -0.016893829964601537 YTNILFESF 9 Unmodified _YTNILFESF_ 0 0 0 REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L MSMS UPN48_class_I_Rep_2 6 567.2786865234375 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 63.953 1 67.428 66.928 67.928 3.4743 0 0 0 0.31276 1 14418 14418 10.074 0 1 + 58184 19881 36731 36750 66886 66886 -0.016893829964601537 YTNILFESF 9 Unmodified _YTNILFESF_ 0 0 0 REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L MULTI-MSMS UPN48_class_I_Rep_3 7 567.279296875 2 567.279315 1132.54408 0.47135 0.00026739 -0.17513 -9.9346E-05 0.29622 0.00016804 567.2793327229032 63.857 0.16376 67.365 67.241 67.405 3.5083 12 9 2 0 0 0 0.37599 1 14288 14288 9.3831 0 1 112580 + 58185 19881 36731 36750 66887 66887 -0.016893829964601537 YTNILPYDF 9 Unmodified _YTNILPYDF_ 0 0 0 nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO;nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO nc|ENSG00000151490|Q16827-4|PTPRO nc|ENSG00000151490|Q16827-4|PTPRO MSMS UPN48_class_I_Rep_1 5 573.2800903320312 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 77.898 1 81.421 80.921 81.921 3.5221 0 0 0 0.39598 1 18560 18560 1.6526 0 1 58186 3589 36732 36751 66888 66888 -0.022413829964989418 YTNKFYNLD 9 Unmodified _YTNKFYNLD_ 0 0 0 L1MB7_dup14934|chr11:67296375-67296607:-|2.66779896263253|0.3165866239157883|3.07|151.0|2|1|sense L1MB7_dup14934|chr11:67296375-67296607:-|2.66779896263253|0.3165866239157883|3.07|151.0|2|1|sense L1MB7_dup14934|chr11:67296375-67296607:-|2.66779896263253|0.3165866239157883|3.07|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 589.2801513671875 2 589.279846 1176.54514 0.40661 0.00023961 0.26708 0.00015739 0.67369 0.00039699 589.2800401575282 49.318 0.56842 52.843 52.596 53.164 3.5246 64 39 3 0 0 0 0.43153 1 9896 9896 6.2058 0 1 166810 58187 10716 36733 36752 66889 66889 -0.03607168627581814 YTNLNYIIY 9 Unmodified _YTNLNYIIY_ 0 0 0 REV__HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|108|3|anti-sense REV__HAL1M8_dup1753|chr15:85732099-85733864:-|1.2216860205648927|0.1325964012202665|3.2|151.0|108|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 588.8009033203125 2 588.800414 1175.58628 0.39766 0.00023414 1.0364 0.00061026 1.4341 0.0008444 588.8009641957403 55.808 0.47482 59.363 59.125 59.6 3.5554 59 33 2 0 0 0 0.45688 1 11922 11922 4.756 0 1 163860 + 58188 23468 36734 36753 66890 66890 0.005505924119233896 YTNNREPH 8 Unmodified _YTNNREPH_ 0 0 0 L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|34|3|sense L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|34|3|sense L1PA7_dup5917|chr7:30380668-30382516:-|1.4662615980301683|0.1796484310039631|3.03|151.0|34|3|sense MSMS UPN48_class_I_Rep_3 7 515.7694702148438 2 515.73868 1029.46281 NaN NaN NaN NaN NaN NaN NaN 18.778 1 22.366 21.866 22.866 3.5874 0 0 0 0.40798 1 1300 1300 0 0 1 58189 14861 36735 36754 66891 66891 -0.05074645915874498 YTNTLTHLF 9 Unmodified _YTNTLTHLF_ 0 0 0 REV__L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|72|1|anti-sense REV__L1MA9_dup5606|chr6:2278613-2280724:-|6.3016929226771845|0.1462287880767615|5.43|151.0|72|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 555.2846069335938 2 555.284931 1108.55531 0.65392 0.00036311 -0.35521 -0.00019724 0.29871 0.00016587 555.2845823801348 60.719 0.70176 64.193 63.888 64.59 3.4737 83 56 2 0 0 0 0.33654 1 13508 13508 11.64 0 1 203560 + 58190 25572 36736 36755 66892 66892 0.005374390976612631 YTPDRTGGLKE 11 Unmodified _YTPDRTGGLKE_ 0 0 0 REV__NOTCH4|p.L1504Tfs*18|1|0.07|ENSG00000204301|chr6:32198952-32198953|-/G|frameshift_variant REV__NOTCH4|p.L1504Tfs*18|1|0.07|ENSG00000204301|chr6:32198952-32198953|-/G|frameshift_variant MSMS UPN48_class_I_Rep_3 7 618.8158569335938 2 618.814584 1235.61462 NaN NaN NaN NaN NaN NaN NaN 72.685 1 76.222 75.722 76.722 3.5373 0 0 0 0.38417 1 16958 16958 4.5289 0.58447 1 + 58191 21187 36737 36756 66893 66893 0.006232903211866869 YTPLWFEKR 9 Unmodified _YTPLWFEKR_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS UPN48_class_I_Rep_1 5 620.3287963867188 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 54.565 1 58.079 57.579 58.579 3.5143 0 0 0 0.38478 1 11565 11565 4.3292 0.73274 1 58192 5064 36738 36757 66894 66894 0.035016937770024015 YTPLWFEKR 9 Unmodified _YTPLWFEKR_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS UPN48_class_I_Rep_1 5 620.328369140625 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 54.706 1 58.214 57.714 58.714 3.5082 0 0 0 0.38478 1 11608 11608 4.3292 0.73274 1 58193 5064 36738 36757 66895 66895 0.035016937770024015 YTPLWFEKR 9 Unmodified _YTPLWFEKR_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS UPN48_class_I_Rep_3 7 620.3278198242188 2 620.329673 1238.64479 NaN NaN NaN NaN NaN NaN NaN 54.778 1 58.347 57.847 58.847 3.5694 0 0 0 0.38478 1 11549 11549 4.3292 0.73274 1 58194 5064 36738 36757 66896 66896 0.035016937770024015 YTPPIWSVT 9 Unmodified _YTPPIWSVT_ 0 0 0 REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 532.276611328125 2 532.276575 1062.5386 0.42604 0.00022677 -1.5285 -0.00081358 -1.1025 -0.00058681 532.2758415151172 77.75 0.39938 81.373 81.297 81.696 3.6222 55 39 2 0 0 0 0.20276 2 18456 18416;18456 20.454 3.011 1 161990 + 58195 22405 36739 36758 66897;66898 66898 0.009829382117231944 YTPPIWSVT 9 Unmodified _YTPPIWSVT_ 0 0 0 REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 532.276575 1062.5386 0.42604 0.00022677 -1.5285 -0.00081358 -1.1025 -0.00058681 532.2758415151172 77.75 0.39938 81.373 81.297 81.696 3.6222 -0.056816 0.00022312 NaN 20.454 55 39 2 NaN NaN NaN NaN 0 NaN NaN 0 161990 + 58196 22405 36739 36758 0.009829382117231944 YTPQLNQPGES 11 Unmodified _YTPQLNQPGES_ 0 0 0 REV__ENST00000483992.5_1_2:27994958-27995003:+|nuORF REV__ENST00000483992.5_1_2:27994958-27995003:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 617.2916259765625 2 617.290942 1232.56733 0.25464 0.00015719 -0.10285 -6.3487E-05 0.1518 9.3702E-05 617.290835335714 49.228 0.48774 52.887 52.513 53 3.6592 60 35 2 0 0 0 0.61292 1 10626 10626 4.897 0 1 161400 + 58197 22589 36740 36759 66899 66899 -0.039649889498150515 YTQFFCWK 8 Unmodified _YTQFFCWK_ 0 0 0 REV__LTR2752_dup142|chr9:137731600-137732763:-|2.892894504221684|0.1000813978465201|4.85|151.0|15|2|sense REV__LTR2752_dup142|chr9:137731600-137732763:-|2.892894504221684|0.1000813978465201|4.85|151.0|15|2|sense MSMS UPN47_class_I_Rep_2 3 561.7562866210938 2 561.757495 1121.50044 NaN NaN NaN NaN NaN NaN NaN 35.678 1 39.089 38.589 39.589 3.4114 0 0 0 0.40746 1 6606 6606 0.69038 0 1 + 58198 30893 36741 36760 66900 66900 -0.055452709746077744 YTQHHHIR 8 Unmodified _YTQHHHIR_ 0 0 0 REV__L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|72|3|sense REV__L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|72|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 546.2789916992188 2 546.278306 1090.54206 0.49903 0.00027261 1.4212 0.00077635 1.9202 0.001049 546.780087280942 55.385 0.26754 58.893 58.771 59.039 3.5082 25 18 2 0 0 0 0.82752 1 11812 11812 5.2307 0.47466 1 82892 + 58199 24340 36742 36761 66901 66901 0.00041045828925234673 YTQLFFNKD 9 Unmodified _YTQLFFNKD_ 0 0 0 L1MD1_dup3862|chrX:44890944-44891548:-|1.3376126941228157|0.0059141366001091|7.82|150.0|13|2|sense L1MD1_dup3862|chrX:44890944-44891548:-|1.3376126941228157|0.0059141366001091|7.82|150.0|13|2|sense L1MD1_dup3862|chrX:44890944-44891548:-|1.3376126941228157|0.0059141366001091|7.82|150.0|13|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 588.2904663085938 2 588.290214 1174.56587 0.59521 0.00035016 -0.19286 -0.00011346 0.40235 0.0002367 588.2900509792524 56.471 1.1805 60.004 59.561 60.741 3.5333 264 103 4 0 0 0 0.28552 1 12324 12324 14.838 1.7958 1 1539000 58200 11937 36743 36762 66902 66902 -0.014425782479065674 YTQLNGYY 8 Unmodified _YTQLNGYY_ 0 0 0 REV__L1MC5a_dup8115|chr8:52697086-52697767:+|1.8266895274917745|0.0278126097363188|6.04|151.0|39|2|anti-sense REV__L1MC5a_dup8115|chr8:52697086-52697767:+|1.8266895274917745|0.0278126097363188|6.04|151.0|39|2|anti-sense MSMS UPN48_class_I_Rep_3 7 511.2342224121094 2 511.234907 1020.45526 NaN NaN NaN NaN NaN NaN NaN 36.992 1 40.655 40.155 41.155 3.663 0 0 0 0.40364 1 6185 6185 5.7604 0 1 + 58201 27176 36744 36763 66903 66903 -0.05414798236142815 YTQQATQSY 9 Unmodified _YTQQATQSY_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MSMS UPN47_class_I_Rep_2 3 545.2452392578125 2 545.246003 1088.47745 NaN NaN NaN NaN NaN NaN NaN 27.612 1 31.11 30.61 31.61 3.4986 0 0 0 0.38073 1 4171 4171 5.2969 0.96765 1 58202 1337 36745 36764 66904 66904 -0.06324618558369366 YTQQATQSY 9 Unmodified _YTQQATQSY_ 0 0 0 nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF nc|ENSG00000089280|P35637-2|FUS nc|ENSG00000089280|P35637-2|FUS MSMS UPN47_class_I_Rep_3 4 545.2460327148438 2 545.246003 1088.47745 NaN NaN NaN NaN NaN NaN NaN 27.584 1 30.926 30.426 31.426 3.3422 0 0 0 0.38073 1 4207 4207 5.2969 0.96765 1 58203 1337 36745 36764 66905 66905 -0.06324618558369366 YTQQSGIHTY 10 Unmodified _YTQQSGIHTY_ 0 0 0 REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|60|3|sense REV__L1PA16_dup9343|chr10:19949982-19952156:+|1.0632845239956514|0.0415703162809712|4.68|146.0|60|3|sense MSMS UPN47_class_I_Rep_2 3 599.2807006835938 2 599.280377 1196.5462 NaN NaN NaN NaN NaN NaN NaN 42.51 1 45.871 45.371 46.371 3.3611 0 0 0 0.53105 1 8676 8676 2.9952 0.69251 1 + 58204 29426 36746 36765 66906 66906 -0.04420954258648635 YTQTSIFLF 9 Unmodified _YTQTSIFLF_ 0 0 0 nc|ENSG00000134333|P00338-3|LDHA nc|ENSG00000134333|P00338-3|LDHA nc|ENSG00000134333|P00338-3|LDHA MSMS UPN47_class_I_Rep_2 3 560.2894897460938 2 560.289682 1118.56481 NaN NaN NaN NaN NaN NaN NaN 38.904 1 42.283 41.783 42.783 3.3785 0 0 0 0.32573 1 7583 7583 9.3831 0 1 58205 16687 36747 36766 66907 66907 0.010272073831629314 YTQVKVVK 8 Unmodified _YTQVKVVK_ 0 0 0 ENSG00000144228|ENST00000280098|SPOPL ENSG00000144228|ENST00000280098|SPOPL ENSG00000144228|ENST00000280098|SPOPL MSMS UPN47_class_I_Rep_2 3 482.7953186035156 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 117.45 1 120.94 120.44 121.44 3.4891 0 0 0 0.40753 1 28706 28706 0.6015 0 1 58206 3346 36748 36767 66908 66908 0.09207234828284072 YTQVPIHP 8 Unmodified _YTQVPIHP_ 0 0 0 MER47A_dup2203|chr17:21145582-21145938:+|1.815619784903524|0.0149925532747236|6.92|151.0|5|2|sense MER47A_dup2203|chr17:21145582-21145938:+|1.815619784903524|0.0149925532747236|6.92|151.0|5|2|sense MER47A_dup2203|chr17:21145582-21145938:+|1.815619784903524|0.0149925532747236|6.92|151.0|5|2|sense MSMS UPN47_class_I_Rep_3 4 477.7566223144531 2 477.75581 953.497067 NaN NaN NaN NaN NaN NaN NaN 24.101 1 27.452 26.952 27.952 3.3509 0 0 0 0.40738 1 3178 3178 0.79363 0 1 58207 16003 36749 36768 66909 66909 0.018458022430536403 YTRAHQRGK 9 Unmodified _YTRAHQRGK_ 0 0 0 REV__L1MCa_dup4839|chr10:21662012-21663356:-|3.188532729782972|0.0271939611551134|6.87|151.0|23|2|sense REV__L1MCa_dup4839|chr10:21662012-21663356:-|3.188532729782972|0.0271939611551134|6.87|151.0|23|2|sense MSMS UPN47_class_I_Rep_2 3 558.8037109375 2 558.804688 1115.59482 NaN NaN NaN NaN NaN NaN NaN 24.398 1 27.864 27.364 28.364 3.4655 0 0 0 0.39598 1 3226 3226 1.6526 0.32309 1 + 58208 27210 36750 36769 66910 66910 0.04165003891762353 YTRENSYK 8 Unmodified _YTRENSYK_ 0 0 0 ENSG00000269067|ENST00000594710|ZNF728;ENSG00000196109|ENST00000397121|ZNF676;nc|ENSG00000160321|O43345-2|ZNF208;ENSG00000160321|ENST00000397126|ZNF208 ENSG00000269067|ENST00000594710|ZNF728 ENSG00000269067|ENST00000594710|ZNF728 MULTI-MSMS UPN47_class_I_Rep_3 4 530.7570190429688 2 530.756538 1059.49852 0.12348 6.5536E-05 0.57283 0.00030403 0.69631 0.00036957 530.7569156434143 44.308 0.98825 47.552 46.981 47.969 3.2441 90 55 2 0 0 0 0.82752 1 9132 9132 7.2892 7.2892 1 187820 58209 5808 36751 36770 66911 66911 -0.028846084588622034 YTRFIFLV 8 Unmodified _YTRFIFLV_ 0 0 0 REV__ENSG00000168958.20,MFF,chr2,+,I4.1,227340562,227342744|41|9.43|2|intron REV__ENSG00000168958.20,MFF,chr2,+,I4.1,227340562,227342744|41|9.43|2|intron MSMS UPN48_class_I_Rep_3 7 529.8051147460938 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 24.349 1 28.118 27.618 28.618 3.769 0 0 0 0.40738 1 2804 2804 0.79363 0 1 + 58210 20292 36752 36771 66912 66912 0.0695582520793323 YTRHGIHTF 9 Unmodified _YTRHGIHTF_ 0 0 0 LTR59_dup77|chr12:31302493-31302837:-|1.5257046357881483|0.1326544832396208|3.52|150.0|22|3|anti-sense LTR59_dup77|chr12:31302493-31302837:-|1.5257046357881483|0.1326544832396208|3.52|150.0|22|3|anti-sense LTR59_dup77|chr12:31302493-31302837:-|1.5257046357881483|0.1326544832396208|3.52|150.0|22|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.2880859375 2 566.28834 1130.56213 0.48362 0.00027387 0.64149 0.00036327 1.1251 0.00063714 566.2887277896856 77.726 0.66319 81.348 81.181 81.845 3.6222 171 67 4 0 0 0 0.051515 1 18405 18405 48.346 48.346 1 1496300 58211 15682 36753 36772 66913 66913 0.002067967688844874 YTRHGIHTF 9 Unmodified _YTRHGIHTF_ 0 0 0 LTR59_dup77|chr12:31302493-31302837:-|1.5257046357881483|0.1326544832396208|3.52|150.0|22|3|anti-sense LTR59_dup77|chr12:31302493-31302837:-|1.5257046357881483|0.1326544832396208|3.52|150.0|22|3|anti-sense LTR59_dup77|chr12:31302493-31302837:-|1.5257046357881483|0.1326544832396208|3.52|150.0|22|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 566.2883911132812 2 566.28834 1130.56213 0.48657 0.00027554 0.79043 0.00044761 1.277 0.00072315 566.2888511930153 77.745 0.64905 81.347 81.163 81.812 3.6016 196 70 4 0 0 0 0.074367 1 18406 18406 39.957 39.957 1 946340 58212 15682 36753 36772 66914 66914 0.002067967688844874 YTRIERTI 8 Unmodified _YTRIERTI_ 0 0 0 REV__L1M4a2_dup186|chr2:32421404-32422420:-|1.4785935068629694|0.0994729138687167|3.89|151.0|31|3|sense REV__L1M4a2_dup186|chr2:32421404-32422420:-|1.4785935068629694|0.0994729138687167|3.89|151.0|31|3|sense MSMS UPN47_class_I_Rep_3 4 526.2987060546875 2 526.298373 1050.58219 NaN NaN NaN NaN NaN NaN NaN 33.302 1 36.577 36.077 37.077 3.2748 0 0 0 0.4044 1 5919 5919 4.756 0 1 + 58213 24507 36754 36773 66915 66915 0.058925477088678235 YTRISFSPF 9 Unmodified _YTRISFSPF_ 0 0 0 L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|52|2|anti-sense L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|52|2|anti-sense L1MA10_dup2429|chr8:120572935-120573966:-|2.1856487847513977|0.1215619975586902|4.17|151.0|52|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 559.28857421875 2 559.287474 1116.5604 0.57939 0.00032404 0.23865 0.00013348 0.81804 0.00045752 559.2877028126846 64.056 0.69559 67.514 67.244 67.94 3.4578 95 51 3 0 0 0 0.13244 2 14499 14499;14541 27.629 2.2295 1 386140 58214 9310 36755 36774 66916;66917 66916 0.006777429603062046 YTRKLDAPF 9 Unmodified _YTRKLDAPF_ 0 0 0 MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|131|2|anti-sense MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|131|2|anti-sense MER83B-int_dup95|chr7:30196055-30198792:-|1.1459237751967664|0.2752843077490384|2.06|150.0|131|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 555.299072265625 2 555.800749 1109.58694 0.46167 0.0002566 -0.63587 -0.00035342 -0.1742 -9.682E-05 555.8005038164989 77.431 0.3206 80.7 80.528 80.848 3.269 49 33 2 0 0 0 0.12444 1 19292 19292 2.0598 0 1 136550 58215 16223 36756 36775 66918 66918 0.03653431851603273 YTRLAQVEL 9 Unmodified _YTRLAQVEL_ 0 0 0 REV__L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|166|3|anti-sense REV__L1PA12_dup1362|chr12:67322155-67325352:+|1.4767461352339213|0.0417117728258862|5.15|151.0|166|3|anti-sense MSMS UPN47_class_I_Rep_3 4 546.3311767578125 2 546.806031 1091.59751 NaN NaN NaN NaN NaN NaN NaN 55.383 1 58.561 58.061 59.061 3.1779 0 0 0 0.39518 1 12652 12652 1.8442 0.19162 1 + 58216 29056 36757 36776 66919 66919 0.05537414506034111 YTRLCFVF 8 Unmodified _YTRLCFVF_ 0 0 0 AluSz_dup67931|chr12:68613073-68613408:+|3.2255244532740908|0.0682275573912493|5.56|151.0|23|3|anti-sense AluSz_dup67931|chr12:68613073-68613408:+|3.2255244532740908|0.0682275573912493|5.56|151.0|23|3|anti-sense AluSz_dup67931|chr12:68613073-68613408:+|3.2255244532740908|0.0682275573912493|5.56|151.0|23|3|anti-sense MSMS UPN47_class_I_Rep_3 4 524.7698364257812 2 524.767863 1047.52117 NaN NaN NaN NaN NaN NaN NaN 25.626 1 28.977 28.477 29.477 3.3509 0 0 0 0.40404 1 3631 3631 5.2307 0 1 58217 360 36758 36777 66920 66920 -0.0006868059492717293 YTRNLKHTT 9 Unmodified _YTRNLKHTT_ 0 0 0 L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|100|3|sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|100|3|sense L1MA3_dup1670|chr3:113388287-113392711:+|1.5143252478527018|0.1408778085309125|3.43|151.0|100|3|sense MSMS UPN48_class_I_Rep_2 6 567.3049926757812 2 567.306729 1132.59891 NaN NaN NaN NaN NaN NaN NaN 65.336 1 68.815 68.315 69.315 3.4792 0 0 0 0.38639 1 14844 14844 3.9444 0 1 58218 9479 36759 36778 66921 66921 0.03791048594803215 YTRSVIDPV 9 Unmodified _YTRSVIDPV_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENST00000556425.2_1_15:21937379-21938108:-|nuORF ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MSMS UPN47_class_I_Rep_1 2 524.7953491210938 2 525.284931 1048.55531 NaN NaN NaN NaN NaN NaN NaN 33.038 1 36.737 36.237 37.237 3.6983 0 0 0 0.39428 1 5766 5766 2.0598 0 1 58219 4888 36760 36779 66922 66922 0.032974390976505674 YTSAKENRN 9 Unmodified _YTSAKENRN_ 0 0 0 HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|16|2|sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|16|2|sense HAL1M8_dup1718|chr15:44479689-44480516:-|1.2752212613496436|0.0316766252558655|5.33|151.0|16|2|sense MSMS UPN48_class_I_Rep_2 6 541.765380859375 2 541.764894 1081.51524 NaN NaN NaN NaN NaN NaN NaN 114.2 1 117.86 117.36 118.36 3.663 0 0 0 0.39518 1 27285 27285 1.8442 0 1 58220 7938 36761 36780 66923 66923 -0.022261075728920332 YTSDYFISY 9 Unmodified _YTSDYFISY_ 0 0 0 nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1 nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-5|ETS1 MULTI-MSMS UPN47_class_I_Rep_1 2 579.7533569335938 2 579.75313 1157.49171 0.33359 0.0001934 0.091472 5.3031E-05 0.42506 0.00024643 579.7531753196116 67.806 0.64288 71.17 70.863 71.505 3.3636 90 49 2 0 0 0 0.056917 6 16331 16254;16268;16292;16331;16370;16407 46.021 13.715 1 226870 58221 2876 36762 36781 66924;66925;66926;66927;66928;66929 66927 -0.08073966130086774 YTSDYFISY 9 Unmodified _YTSDYFISY_ 0 0 0 nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1 nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-5|ETS1 MULTI-MSMS UPN47_class_I_Rep_2 3 579.7533569335938 2 579.75313 1157.49171 0.38889 0.00022546 -0.075098 -4.3539E-05 0.31379 0.00018192 579.7530538871647 68.045 0.64679 71.315 70.994 71.641 3.2696 133 54 3 0 0 0 0.041849 5 16421 16353;16384;16421;16458;16496 52.268 19.963 1 288820 58222 2876 36762 36781 66930;66931;66932;66933;66934 66932 -0.08073966130086774 YTSDYFISY 9 Unmodified _YTSDYFISY_ 0 0 0 nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1 nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-5|ETS1 MULTI-MSMS UPN47_class_I_Rep_3 4 579.75341796875 2 579.75313 1157.49171 0.44221 0.00025637 0.11716 6.7926E-05 0.55937 0.0003243 579.7530790333439 68.016 0.67767 71.214 70.898 71.576 3.1977 123 51 3 0 0 0 0.018707 8 16510 16428;16435;16472;16475;16510;16513;16549;16599 64.236 22.142 1 277770 58223 2876 36762 36781 66935;66936;66937;66938;66939;66940;66941;66942 66939 -0.08073966130086774 YTSESLKQW 9 Unmodified _YTSESLKQW_ 0 0 0 REV__L1M4_dup10226|chr9:125315241-125316210:+|2.836631676958196|0.0681574008207799|5.38|151.0|26|3|sense REV__L1M4_dup10226|chr9:125315241-125316210:+|2.836631676958196|0.0681574008207799|5.38|151.0|26|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.2802124023438 2 571.279846 1140.54514 -0.18252 -0.00010427 0.39438 0.0002253 0.21187 0.00012104 571.2800896204051 30.121 0.7796 33.433 33.158 33.937 3.3116 141 63 3 0 0 0 0.48643 1 4936 4936 2.0598 0.21551 1 141480 + 58224 24347 36763 36782 66943 66943 -0.01951168627556399 YTSEYGATYCL 11 Unmodified _YTSEYGATYCL_ 0 0 0 REV__L1ME3F_dup3462|chr13:28054032-28054320:-|3.12671093520858|0.0041966014235285|9.54|151.0|23|3|anti-sense REV__L1ME3F_dup3462|chr13:28054032-28054320:-|3.12671093520858|0.0041966014235285|9.54|151.0|23|3|anti-sense MSMS UPN48_class_I_Rep_2 6 635.765625 2 635.768454 1269.52235 NaN NaN NaN NaN NaN NaN NaN 50.164 1 53.858 53.358 54.358 3.6946 0 0 0 0.38417 1 10213 10213 5.2969 0.54088 1 + 58225 28177 36764 36783 66944 66944 -0.1016255580732377 YTSFKFVEV 9 Unmodified _YTSFKFVEV_ 0 0 0 L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|84|1|anti-sense L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|84|1|anti-sense L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|84|1|anti-sense MSMS UPN47_class_I_Rep_2 3 560.2880249023438 2 560.289682 1118.56481 NaN NaN NaN NaN NaN NaN NaN 38.818 1 42.196 41.696 42.696 3.3785 0 0 0 0.37692 1 7556 7556 6.2058 1.4498 1 58226 11910 36765 36784 66945 66945 0.010272073831856687 YTSHFLYPLV 10 Unmodified _YTSHFLYPLV_ 0 0 0 L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|312|3|anti-sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|312|3|anti-sense L1PB1_dup1443|chr2:148087223-148092849:+|7.028705923261507|0.2470358805784519|4.83|151.0|312|3|anti-sense MSMS UPN47_class_I_Rep_1 2 620.2274780273438 2 620.324057 1238.63356 NaN NaN NaN NaN NaN NaN NaN 54.037 1 57.565 57.065 58.065 3.5278 0 0 0 0.53105 1 12157 12157 3.9444 0.3479 1 58227 15052 36766 36785 66946 66946 0.023788716829130863 YTSKEKELLE 10 Unmodified _YTSKEKELLE_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3;REV__nc|ENSG00000158486|Q8TD57|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS UPN48_class_I_Rep_1 5 620.3271484375 2 620.326993 1238.63943 NaN NaN NaN NaN NaN NaN NaN 54.495 1 58.009 57.509 58.509 3.5143 0 0 0 0.53105 1 11544 11544 6.7232 0 1 + 58228 19845;32023 36767 36786 66947 66947 0.02965925403896108 YTSLDCKWY 9 Unmodified _YTSLDCKWY_ 0 0 0 Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|115|1|anti-sense Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|115|1|anti-sense Tigger2_dup1531|chr9:3430690-3432941:+|1.7848740626954462|0.0459241841177698|5.28|151.0|115|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 589.7615966796875 2 589.762975 1177.5114 -0.092983 -5.4838E-05 -2.8481 -0.0016797 -2.9411 -0.0017345 589.7613528944147 35.961 0.11206 39.216 39.161 39.274 3.2547 12 8 2 0 0 0 0.49026 1 6728 6728 1.6526 0.17072 1 41718 58229 33287 36768 36787 66948 66948 -0.07025913390975802 YTSLKATKI 9 Unmodified _YTSLKATKI_ 0 0 0 ENST00000382496.9_1_5:9042799-9043000:-|nuORF ENST00000382496.9_1_5:9042799-9043000:-|nuORF ENST00000382496.9_1_5:9042799-9043000:-|nuORF MSMS UPN46_class_I_Rep_3 1 512.8034057617188 2 512.8055 1023.59645 NaN NaN NaN NaN NaN NaN NaN 29.376 1 29.376 28.876 29.876 0 0 0 0 0.39598 1 4643 4643 1.6526 0.85899 1 58230 6500 36769 36788 66949 66949 0.0855920013711966 YTSLLLILKL 10 Unmodified _YTSLLLILKL_ 0 0 0 REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|234|3|anti-sense REV__HUERS-P3-int_dup78|chr2:208391404-208395038:-|2.0161495445322166|0.0163664921789589|6.94|132.0|234|3|anti-sense MSMS UPN46_class_I_Rep_3 1 588.8853759765625 2 588.88375 1175.75295 NaN NaN NaN NaN NaN NaN NaN 43.319 1 43.319 42.819 43.819 0 0 0 0 0.53105 1 8641 8641 0.45834 0 1 + 58231 23979 36770 36789 66950 66950 0.17210065307608602 YTSMRHNRFP 10 Unmodified _YTSMRHNRFP_ 0 0 0 L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|13|2|sense L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|13|2|sense L1MA3_dup190|chr1:93378323-93379471:+|1.261459755406835|0.4381615145101054|1.53|151.0|13|2|sense MULTI-MSMS UPN47_class_I_Rep_1 2 436.879150390625 3 436.880384 1307.61932 0.074306 3.2463E-05 -1.3659 -0.00059672 -1.2915 -0.00056425 436.87915404291067 81.485 0.23891 84.973 84.874 85.113 3.4874 37 24 2 0 0 0 0.56454 1 20310 20310 0.62683 0.17231 1 56711 58232 9494 36771 36790 66951 66951 -0.022181040170607957 YTSNDFHL 8 Unmodified _YTSNDFHL_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MSMS UPN48_class_I_Rep_3 7 498.72509765625 2 498.724707 995.43486 NaN NaN NaN NaN NaN NaN NaN 53.948 1 57.531 57.031 58.031 3.5836 0 0 0 0.40581 1 11293 11293 2.8892 0.31174 1 + 58233 21411 36772 36791 66952 66952 -0.06303968895952039 YTSSFLVQY 9 Unmodified _YTSSFLVQY_ 0 0 0 L1PA7_dup5864|chr7:16159381-16162961:-|3.823535854610049|0.1911005985247736|4.32|151.0|205|3|anti-sense L1PA7_dup5864|chr7:16159381-16162961:-|3.823535854610049|0.1911005985247736|4.32|151.0|205|3|anti-sense L1PA7_dup5864|chr7:16159381-16162961:-|3.823535854610049|0.1911005985247736|4.32|151.0|205|3|anti-sense MSMS UPN47_class_I_Rep_3 4 554.2722778320312 2 554.27149 1106.52843 NaN NaN NaN NaN NaN NaN NaN 83.059 1 86.396 85.896 86.896 3.337 0 0 0 0.35339 1 20826 20826 7.9102 0 1 58234 14856 36773 36792 66953 66953 -0.020576695135105183 YTSSIGIGVFH 11 Unmodified _YTSSIGIGVFH_ 0 0 0 nc|ENSG00000121644|Q9BSY9-2|DESI2;ENSG00000121644|ENST00000302550|DESI2 nc|ENSG00000121644|Q9BSY9-2|DESI2 nc|ENSG00000121644|Q9BSY9-2|DESI2 MULTI-MSMS UPN47_class_I_Rep_1 2 590.8037719726562 2 590.803488 1179.59242 0.4165 0.00024607 -0.36532 -0.00021583 0.051174 3.0234E-05 590.8032487243993 59.556 0.49881 62.954 62.751 63.25 3.3982 47 31 2 0 0 0 0.65271 1 13822 13822 2.9952 0 1 85678 58235 2360 36774 36793 66954 66954 0.009811106434199246 YTSTLKVLH 9 Unmodified _YTSTLKVLH_ 0 0 0 ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1 ENSG00000063761|ENST00000238561|ADCK1 ENSG00000063761|ENST00000238561|ADCK1 MSMS UPN46_class_I_Rep_3 1 531.3193359375 2 531.303124 1060.5917 NaN NaN NaN NaN NaN NaN NaN 89.687 1 89.687 89.187 90.187 0 0 0 0 0.38478 1 21588 21588 4.3292 0 1 58236 985 36775 36794 66955 66955 0.06382315994369492 YTSTTQTPRA 10 Unmodified _YTSTTQTPRA_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MULTI-SECPEP UPN47_class_I_Rep_2 3 562.7584228515625 2 563.280377 1124.5462 0.046369 2.6119E-05 -1.1426 -0.00064361 -1.0962 -0.00061749 563.2801976525395 30.465 0.57066 33.947 33.674 34.245 3.4821 72 44 2 0 0 0 0.84575 1 4999 4999 4.5289 0.93237 1 74637 58237 1449 36776 36795 66956 66956 -0.011089542586660173 YTSVCFIYF 9 Unmodified _YTSVCFIYF_ 0 0 0 REV__L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|57|3|anti-sense REV__L1MC5a_dup14861|chr17:30870533-30871351:-|2.528138283564598|0.362542648475206|2.8|151.0|57|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 571.7635498046875 2 571.764986 1141.51542 -0.082594 -4.7225E-05 -1.0927 -0.00062479 -1.1753 -0.00067201 571.7643494858099 30.352 0.40928 34.097 33.909 34.318 3.7449 45 30 2 0 0 0 0.48643 1 4934 4934 2.0598 0 1 119620 + 58238 27133 36777 36796 66957 66957 -0.04967823897254675 YTTETLYLL 9 Unmodified _YTTETLYLL_ 0 0 0 L1MB1_dup3969|chr10:79818674-79819529:-|1.3433784874354306|0.0138770549850418|6.6|149.0|50|3|anti-sense L1MB1_dup3969|chr10:79818674-79819529:-|1.3433784874354306|0.0138770549850418|6.6|149.0|50|3|anti-sense L1MB1_dup3969|chr10:79818674-79819529:-|1.3433784874354306|0.0138770549850418|6.6|149.0|50|3|anti-sense MSMS UPN48_class_I_Rep_3 7 558.7944946289062 2 558.794798 1115.57504 NaN NaN NaN NaN NaN NaN NaN 13.576 1 17.107 16.607 17.607 3.5314 0 0 0 0.4029 1 273 273 0 0 1 58239 10182 36778 36797 66958 66958 0.021877703177551666 YTTFIKQKKL 10 Unmodified _YTTFIKQKKL_ 0 0 0 REV__L1M5_dup8047|chr2:202741833-202742802:+|2.7729536636867915|0.0482029175637271|5.85|151.0|38|3|sense REV__L1M5_dup8047|chr2:202741833-202742802:+|2.7729536636867915|0.0482029175637271|5.85|151.0|38|3|sense MSMS UPN48_class_I_Rep_2 6 635.3844604492188 2 635.381906 1268.74926 NaN NaN NaN NaN NaN NaN NaN 70.548 1 74.083 73.583 74.583 3.5359 0 0 0 0.53105 1 16416 16416 0.40072 0.40072 1 + 58240 24709 36779 36798 66959 66959 0.1256339553374346 YTTICSSIYL 10 Unmodified _YTTICSSIYL_ 0 0 0 L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 582.7880249023438 2 582.286282 1162.55801 0.20764 0.0001209 0.42976 0.00025025 0.6374 0.00037115 582.286384869614 49.273 0.42743 52.932 52.573 53 3.6592 52 30 2 0 0 0 0.56078 1 10640 10640 3.2813 0.28607 1 143260 58241 12223 36780 36799 66960 66960 -0.016764735596780156 YTTICSSIYL 10 Unmodified _YTTICSSIYL_ 0 0 0 L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 582.2703857421875 2 582.286282 1162.55801 0.41933 0.00024417 -0.25087 -0.00014608 0.16846 9.8091E-05 582.285934468252 49.712 0.91364 53.055 52.585 53.499 3.3431 88 56 2 0 0 0 0.48573 1 10948 10948 13.042 1.5478 1 111610 58242 12223 36780 36799 66961 66961 -0.016764735596780156 YTTICSSIYL 10 Unmodified _YTTICSSIYL_ 0 0 0 L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense L1ME1_dup14485|chr7:158747382-158748169:+|2.416576673701566|0.356038506561291|2.76|151.0|31|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 582.287109375 2 582.286282 1162.55801 0.47331 0.0002756 -0.12106 -7.0492E-05 0.35225 0.00020511 582.2861270595332 49.76 0.70803 52.987 52.657 53.365 3.2262 86 40 3 0 0 0 0.54466 1 10853 10853 6.2058 0.47393 1 113100 58243 12223 36780 36799 66962 66962 -0.016764735596780156 YTTISELIL 9 Unmodified _YTTISELIL_ 0 0 0 L1MC4_dup2484|chr2:63168868-63169898:-|1.1864903496807409|0.0337261794152817|5.14|151.0|71|3|anti-sense L1MC4_dup2484|chr2:63168868-63169898:-|1.1864903496807409|0.0337261794152817|5.14|151.0|71|3|anti-sense L1MC4_dup2484|chr2:63168868-63169898:-|1.1864903496807409|0.0337261794152817|5.14|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_1 2 526.796875 2 526.79734 1051.58013 NaN NaN NaN NaN NaN NaN NaN 20.957 1 24.601 24.101 25.101 3.6436 0 0 0 0.4029 1 2197 2197 0 0 1 58244 11480 36781 36800 66963 66963 0.05640074180405463 YTTLIWMLP 9 Unmodified _YTTLIWMLP_ 0 0 0 REV__L1PA10_dup1308|chr3:127703604-127705402:+|1.448845031876295|0.1521042932410829|3.25|151.0|97|2|anti-sense REV__L1PA10_dup1308|chr3:127703604-127705402:+|1.448845031876295|0.1521042932410829|3.25|151.0|97|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 569.3037109375 2 569.304278 1136.594 -0.072799 -4.1445E-05 0.43854 0.00024966 0.36574 0.00020822 569.304365852445 30.989 0.4678 34.719 34.573 35.041 3.7293 49 37 2 0 0 0 0.48846 1 5105 5105 1.8442 0.19162 1 76657 + 58245 28929 36782 36801 66964 66964 0.031170284078143595 YTTLYCVTS 9 Unmodified _YTTLYCVTS_ 0 0 0 AluJo_dup1810|chr1:35840601-35840914:-|1.8066247203991623|0.3247623420596387|2.48|151.0|9|2|sense AluJo_dup1810|chr1:35840601-35840914:-|1.8066247203991623|0.3247623420596387|2.48|151.0|9|2|sense AluJo_dup1810|chr1:35840601-35840914:-|1.8066247203991623|0.3247623420596387|2.48|151.0|9|2|sense MSMS UPN47_class_I_Rep_1 2 525.7445678710938 2 525.74425 1049.47395 NaN NaN NaN NaN NaN NaN NaN 36.587 1 40.256 39.756 40.756 3.6692 0 0 0 0.28335 1 6846 6846 11.64 0 1 58246 93 36783 36802 66965 66965 -0.04881004656613186 YTTNPCDNE 9 Unmodified _YTTNPCDNE_ 0 0 0 L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|41|1|sense L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|41|1|sense L1PA14_dup403|chr2:168645538-168649040:-|5.282624119293337|0.028270686676926|7.55|151.0|41|1|sense MSMS UPN47_class_I_Rep_3 4 528.7003784179688 2 528.700571 1055.38659 NaN NaN NaN NaN NaN NaN NaN 117.82 1 121.24 120.74 121.74 3.4238 0 0 0 0.4029 1 29037 29037 0 0 1 58247 13862 36784 36803 66966 66966 -0.13888830598193636 YTTSNCGELL 10 Unmodified _YTTSNCGELL_ 0 0 0 REV__ENST00000508737.1_1_4:38930819-38945175:+|nuORF REV__ENST00000508737.1_1_4:38930819-38945175:+|nuORF MSMS UPN48_class_I_Rep_2 6 550.7490844726562 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 62.619 1 66.093 65.593 66.593 3.4738 0 0 0 0.53105 1 14010 14010 5.2969 0 1 + 58248 21095 36785 36804 66967 66967 -0.060188076332678975 YTTVALLPI 9 Unmodified _YTTVALLPI_ 0 0 0 ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 ENSG00000198838|ENST00000634891|RYR3 ENSG00000198838|ENST00000634891|RYR3 MSMS UPN47_class_I_Rep_3 4 495.7806396484375 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 82.514 1 85.851 85.351 86.351 3.337 0 0 0 0.38478 1 20681 20681 4.3292 0.38484 1 58249 5471 36786 36805 66968 66968 0.0845269925117691 YTTVALLPI 9 Unmodified _YTTVALLPI_ 0 0 0 ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 ENSG00000198838|ENST00000634891|RYR3 ENSG00000198838|ENST00000634891|RYR3 MSMS UPN47_class_I_Rep_3 4 495.78076171875 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 82.801 1 86.138 85.638 86.638 3.337 0 0 0 0.38478 1 20756 20756 4.3292 0.38484 1 58250 5471 36786 36805 66969 66969 0.0845269925117691 YTVEEHFIQ 9 Unmodified _YTVEEHFIQ_ 0 0 0 REV__HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|13|2|sense REV__HERV3-int_dup286|chr19:53438276-53438991:-|1.549448261075685|0.3790815565271649|2.03|151.0|13|2|sense MSMS UPN48_class_I_Rep_1 5 583.27783203125 2 583.279846 1164.54514 NaN NaN NaN NaN NaN NaN NaN 82.247 1 85.822 85.322 86.322 3.5753 0 0 0 0.35339 1 19637 19637 7.9102 2.1783 1 + 58251 23586 36787 36806 66970 66970 -0.03055168627565763 YTVLAPYG 8 Unmodified _YTVLAPYG_ 0 0 0 REV__nc|ENSG00000111077|Q63HR2-5|TNS2 REV__nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS UPN46_class_I_Rep_3 1 442.2317810058594 2 442.231636 882.448719 0.13771 6.0901E-05 0.023792 1.0522E-05 0.1615 7.1423E-05 442.23150017581867 44.785 0.41573 44.785 44.494 44.909 0 70 43 2 0 0 0 0.82752 1 9012 9012 14.582 2.0501 1 353190 + 58252 18446 36788 36807 66971 66971 0.002793086031488201 YTVLAPYG 8 Unmodified _YTVLAPYG_ 0 0 0 REV__nc|ENSG00000111077|Q63HR2-5|TNS2 REV__nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS UPN47_class_I_Rep_1 2 442.23138427734375 2 442.231636 882.448719 -0.36479 -0.00016132 0.5164 0.00022837 0.15161 6.7046E-05 442.23157217739123 40.096 0.61228 43.763 43.558 44.17 3.6668 64 44 2 0 0 0 0.82752 1 7930 7930 14.582 2.0501 1 74497 + 58253 18446 36788 36807 66972 66972 0.002793086031488201 YTVLAPYG 8 Unmodified _YTVLAPYG_ 0 0 0 REV__nc|ENSG00000111077|Q63HR2-5|TNS2 REV__nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS UPN47_class_I_Rep_2 3 442.23193359375 2 442.231636 882.448719 -0.66153 -0.00029255 0.79923 0.00035344 0.13769 6.0892E-05 442.231884298166 40.58 0.71667 43.951 43.577 44.294 3.3712 64 50 2 0 0 0 0.82752 1 8086 8086 14.582 2.0501 1 83956 + 58254 18446 36788 36807 66973 66973 0.002793086031488201 YTVLISVL 8 Unmodified _YTVLISVL_ 0 0 0 REV__L1MC_dup7823|chr20:34466693-34467246:+|1.0554824370097318|0.0536338313068647|4.3|151.0|37|3|anti-sense REV__L1MC_dup7823|chr20:34466693-34467246:+|1.0554824370097318|0.0536338313068647|4.3|151.0|37|3|anti-sense MSMS UPN48_class_I_Rep_3 7 454.2803039550781 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 42.31 1 45.951 45.451 46.451 3.6415 0 0 0 0.40604 1 7739 7739 2.5775 0 1 + 58255 26481 36789 36808 66974 66974 0.08561027705434299 YTVLPSGF 8 Unmodified _YTVLPSGF_ 0 0 0 MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 442.23162841796875 2 442.231636 882.448719 0.13771 6.0901E-05 0.023792 1.0522E-05 0.1615 7.1423E-05 442.23150017581867 44.785 0.41573 44.785 44.494 44.909 0 70 43 2 0 0 0 0.82752 1 9054 9054 23.148 2.2772 1 353190 58256 16006 36790 36809 66975 66975 0.002793086031601888 YTVLPSGF 8 Unmodified _YTVLPSGF_ 0 0 0 MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 442.2315673828125 2 442.231636 882.448719 -0.77834 -0.0003442 0.74773 0.00033067 -0.030606 -1.3535E-05 442.23185842743436 40.595 0.64152 43.833 43.645 44.287 3.2372 55 41 2 0 0 0 0.82752 1 8143 8143 16.942 2.3606 1 74821 58257 16006 36790 36809 66976 66976 0.002793086031601888 YTVLPSGF 8 Unmodified _YTVLPSGF_ 0 0 0 MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MER47B_dup124|chr3:33435646-33435949:-|1.1910137250399198|0.0193853557535268|5.94|151.0|10|3|sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 442.231636 882.448719 0.068698 3.038E-05 0.67587 0.00029889 0.74457 0.00032927 442.2316744995189 41.288 0.067078 45.038 45.009 45.076 3.7509 0.12687 0.00049968 NaN 23.148 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 47839 58258 16006 36790 36809 0.002793086031601888 YTVMLIYLV 9 Unmodified _YTVMLIYLV_ 0 0 0 REV__Kanga11a_dup736|chr14:35185435-35186032:+|1.1278303466464266|0.0074745164660504|7.24|151.0|28|1|anti-sense REV__Kanga11a_dup736|chr14:35185435-35186032:+|1.1278303466464266|0.0074745164660504|7.24|151.0|28|1|anti-sense MSMS UPN48_class_I_Rep_1 5 557.814697265625 2 557.814479 1113.6144 NaN NaN NaN NaN NaN NaN NaN 100.34 1 103.95 103.45 104.45 3.6084 0 0 0 0.39518 1 24238 24238 1.8442 0 1 + 58259 23989 36791 36810 66977 66977 0.06214199067608206 YTVPPARPP 9 Unmodified _YTVPPARPP_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENST00000482131.1_1_1:35827333-35836274:+|nuORF;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|3|intron nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN48_class_I_Rep_2 6 499.27532958984375 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.722 1 57.332 56.832 57.832 3.6098 0 0 0 0.38478 1 11287 11287 4.3292 0 1 58260 3438 36792 36811 66978 66978 0.04085777651414446 YTVPPARPP 9 Unmodified _YTVPPARPP_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ENST00000482131.1_1_1:35827333-35836274:+|nuORF;ENSG00000146463.12,ZMYM4,chr1,+,I12.1,35386190,35387002|30|6.64|3|intron nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS UPN48_class_I_Rep_2 6 499.2760314941406 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 53.85 1 57.431 56.931 57.931 3.5817 0 0 0 0.38478 1 11325 11325 4.3292 0 1 58261 3438 36792 36811 66979 66979 0.04085777651414446 YTVQVNHAHVR 11 Unmodified _YTVQVNHAHVR_ 0 0 0 REV__L1PA5_dup10363|chr17:29737932-29738492:-|2.743212250249203|0.0838012940087255|5.03|151.0|19|1|anti-sense REV__L1PA5_dup10363|chr17:29737932-29738492:-|2.743212250249203|0.0838012940087255|5.03|151.0|19|1|anti-sense MSMS UPN48_class_I_Rep_2 6 441.901123046875 3 441.902065 1322.68437 NaN NaN NaN NaN NaN NaN NaN 41.084 1 44.835 44.335 45.335 3.7508 0 0 0 0.38417 1 7468 7468 2.4348 0.69251 1 + 58262 29703 36793 36812 66980 66980 0.03593213780459337 YTVRGLRPN 9 Unmodified _YTVRGLRPN_ 0 0 0 nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 MULTI-SECPEP UPN47_class_I_Rep_3 4 538.3040771484375 2 538.30399 1074.59343 -0.26473 -0.0001425 0.21009 0.00011309 -0.05464 -2.9413E-05 538.3040756845411 26.154 1.0962 29.502 29.114 30.21 3.3478 163 98 2 0 0 0 0.12354 1 3763 3763 3.5965 0 1 155300 58263 5078 36794 36813 66981 66981 0.05911369802993249 YTVRKTTK 8 Unmodified _YTVRKTTK_ 0 0 0 REV__L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|9|1|sense REV__L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|9|1|sense MSMS UPN48_class_I_Rep_2 6 498.7936706542969 2 498.795466 995.57638 NaN NaN NaN NaN NaN NaN NaN 53.356 1 56.966 56.466 57.466 3.6098 0 0 0 0.40643 1 11175 11175 2.0598 0 1 + 58264 26490 36795 36814 66982 66982 0.07841449197178463 YTVVISIIII 10 Unmodified _YTVVISIIII_ 0 0 0 REV__Tigger1_dup8691|chr11:76027941-76030199:+|4.768888239226769|0.2554518951663401|4.22|151.0|29|2|sense REV__Tigger1_dup8691|chr11:76027941-76030199:+|4.768888239226769|0.2554518951663401|4.22|151.0|29|2|sense MSMS UPN47_class_I_Rep_3 4 567.3644409179688 2 567.36265 1132.71075 NaN NaN NaN NaN NaN NaN NaN 47.955 1 51.196 50.696 51.696 3.2405 0 0 0 0.53105 1 10385 10385 1.6526 0 1 + 58265 32551 36796 36815 66983 66983 0.14970089899247796 YTVWIGGI 8 Unmodified _YTVWIGGI_ 0 0 0 REV__nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 REV__nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 MSMS UPN48_class_I_Rep_2 6 454.7493896484375 2 454.747453 907.480354 NaN NaN NaN NaN NaN NaN NaN 27.229 1 30.86 30.36 31.36 3.6311 0 0 0 0.40738 1 3578 3578 0.79363 0 1 + 58266 18479 36797 36816 66984 66984 0.022913013571155716 YTVYRFATL 9 Unmodified _YTVYRFATL_ 0 0 0 REV__L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|44|2|anti-sense REV__L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|44|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 567.3023071289062 2 567.303124 1132.5917 0.51821 0.00029398 -0.30691 -0.00017411 0.21131 0.00011988 567.3029450622698 65.064 0.27664 68.518 68.331 68.607 3.4541 47 21 3 0 0 0 0.46869 1 14756 14756 3.9444 0 1 130810 + 58267 26449 36798 36817 66985 66985 0.030703159943641367 YTVYRFATL 9 Unmodified _YTVYRFATL_ 0 0 0 REV__L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|44|2|anti-sense REV__L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|44|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 567.3037719726562 2 567.303124 1132.5917 0.51869 0.00029426 -0.10195 -5.7837E-05 0.41674 0.00023642 567.3030675888688 65.157 0.23503 68.636 68.449 68.684 3.4792 20 15 2 0 0 0 0.47197 1 14747 14747 3.5965 0 1 114780 + 58268 26449 36798 36817 66986 66986 0.030703159943641367 YTVYRFATL 9 Unmodified _YTVYRFATL_ 0 0 0 REV__L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|44|2|anti-sense REV__L1MB8_dup9404|chrX:111704064-111704854:+|2.711634354267814|0.2448724539507079|3.47|151.0|44|2|anti-sense MSMS UPN48_class_I_Rep_3 7 567.3037109375 2 567.303124 1132.5917 NaN NaN NaN NaN NaN NaN NaN 65.03 1 68.538 68.038 69.038 3.5077 0 0 0 0.31276 1 14664 14664 10.074 0 1 + 58269 26449 36798 36817 66987 66987 0.030703159943641367 YTWCQWNKRW 10 Unmodified _YTWCQWNKRW_ 0 0 0 REV__MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|3|1|sense REV__MamRep137_dup390|chr3:49996066-49996419:+|1.533009935008146|0.0626657061513187|4.61|151.0|3|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 491.568115234375 3 490.896034 1469.66627 0.17226 8.456E-05 1.9033 0.00093434 2.0756 0.0010189 491.23173421016367 36.196 0.17523 36.196 36.089 36.265 0 21 15 2 0 0 0 0.84575 1 6681 6681 0.69767 0.55777 1 139320 + 58270 31051 36799 36818 66988 66988 -0.0497724446590837 YTWKFHLY 8 Unmodified _YTWKFHLY_ 0 0 0 L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|24|2|sense L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|24|2|sense L1ME1_dup27519|chr17:36970831-36971917:+|1.1166824768602073|0.0635731000830261|4.13|151.0|24|2|sense MSMS UPN48_class_I_Rep_3 7 579.2937622070312 2 579.292559 1156.57057 NaN NaN NaN NaN NaN NaN NaN 23.412 1 27.163 26.663 27.663 3.7507 0 0 0 0.40625 1 2558 2558 2.3027 0.24298 1 58271 12355 36800 36819 66989 66989 -0.0014564931448148855 YTWYSMERI 9 Unmodified _YTWYSMERI_ 0 0 0 Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|31|2|sense;Tigger2_dup2285|chr14:71091430-71094095:+|1.505106563175205|0.1564294557003543|3.27|151.0|20|1|sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|31|2|sense Tigger2_dup2115|chr12:101798523-101799972:+|2.6861372453217043|0.4912018065339968|2.45|151.0|31|2|sense MSMS UPN46_class_I_Rep_3 1 624.7872314453125 2 624.789524 1247.56449 NaN NaN NaN NaN NaN NaN NaN 30.231 1 30.231 29.731 30.731 0 0 0 0 0.3979 1 4893 4893 0 0 1 58272 33295 36801 36820 66990 66990 -0.049385356083121223 YTWYWVFY 8 Unmodified _YTWYWVFY_ 0 0 0 L1PA16_dup5780|chr6:156206900-156208522:+|1.8470942647670303|0.0071773024119159|8.01|150.0|80|2|anti-sense L1PA16_dup5780|chr6:156206900-156208522:+|1.8470942647670303|0.0071773024119159|8.01|150.0|80|2|anti-sense L1PA16_dup5780|chr6:156206900-156208522:+|1.8470942647670303|0.0071773024119159|8.01|150.0|80|2|anti-sense MSMS UPN48_class_I_Rep_2 6 614.2817993164062 2 614.279118 1226.54368 NaN NaN NaN NaN NaN NaN NaN 42.314 1 46.072 45.572 46.572 3.7579 0 0 0 0.40746 1 7819 7819 0.69038 0.088878 1 58273 14099 36802 36821 66991 66991 -0.06052757925658625 YTYFVYIY 8 Unmodified _YTYFVYIY_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|146|2|anti-sense REV__L1M2_dup19|chr1:28004445-28005431:+|1.2059678155397415|0.1157227246434604|3.38|151.0|26|3|sense REV__L1M2_dup19|chr1:28004445-28005431:+|1.2059678155397415|0.1157227246434604|3.38|151.0|26|3|sense MSMS UPN47_class_I_Rep_2 3 566.2728881835938 2 566.273501 1130.53245 NaN NaN NaN NaN NaN NaN NaN 44.508 1 47.864 47.364 48.364 3.3556 0 0 0 0.40364 1 9288 9288 5.7604 0 1 58274 9016 36803 36822 66992 66992 -0.02759580019801433 YTYFVYIY 8 Unmodified _YTYFVYIY_ 0 0 0 L1M4b_dup4078|chr18:79928455-79931730:+|3.1720368964446752|0.2573016917325547|3.62|151.0|146|2|anti-sense REV__L1M2_dup19|chr1:28004445-28005431:+|1.2059678155397415|0.1157227246434604|3.38|151.0|26|3|sense REV__L1M2_dup19|chr1:28004445-28005431:+|1.2059678155397415|0.1157227246434604|3.38|151.0|26|3|sense MSMS UPN48_class_I_Rep_3 7 566.2720947265625 2 566.273501 1130.53245 NaN NaN NaN NaN NaN NaN NaN 86.068 1 89.838 89.338 90.338 3.7701 0 0 0 0.40738 1 20432 20432 0.79363 0 1 58275 9016 36803 36822 66993 66993 -0.02759580019801433 YTYHFLTW 8 Unmodified _YTYHFLTW_ 0 0 0 REV__L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|64|2|sense REV__L1M2a_dup113|chr4:129058049-129062392:-|10.874150472324448|0.0794379487092195|7.1|151.0|64|2|sense MSMS UPN48_class_I_Rep_3 7 565.636474609375 2 565.768917 1129.52328 NaN NaN NaN NaN NaN NaN NaN 42.262 1 45.904 45.404 46.404 3.6415 0 0 0 0.40625 1 7724 7724 2.3027 0 1 + 58276 24255 36804 36823 66994 66994 -0.036299285854966 YTYHLSEF 8 Unmodified _YTYHLSEF_ 0 0 0 REV__Tigger4a_dup2619|chr13:40939642-40939858:+|1.1413704263503626|0.097136339283392|3.55|151.0|11|2|anti-sense REV__Tigger4a_dup2619|chr13:40939642-40939858:+|1.1413704263503626|0.097136339283392|3.55|151.0|11|2|anti-sense MSMS UPN47_class_I_Rep_1 2 530.250732421875 2 530.242732 1058.47091 NaN NaN NaN NaN NaN NaN NaN 14.368 1 17.843 17.343 18.343 3.475 0 0 0 0.40625 1 552 552 2.3027 0 1 + 58277 32795 36805 36824 66995 66995 -0.055985117190857636 YTYHLSEF 8 Unmodified _YTYHLSEF_ 0 0 0 REV__Tigger4a_dup2619|chr13:40939642-40939858:+|1.1413704263503626|0.097136339283392|3.55|151.0|11|2|anti-sense REV__Tigger4a_dup2619|chr13:40939642-40939858:+|1.1413704263503626|0.097136339283392|3.55|151.0|11|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 530.251220703125 2 530.242732 1058.47091 -0.16402 -8.6973E-05 -0.59582 -0.00031593 -0.75985 -0.0004029 530.2419397470707 14.45 0.2087 17.837 17.723 17.932 3.3871 35 26 2 0 0 0 0.82752 1 585 585 2.3027 0 1 29218 + 58278 32795 36805 36824 66996 66996 -0.055985117190857636 YTYIYTPH 8 Unmodified _YTYIYTPH_ 0 0 0 L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|48|2|anti-sense L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|48|2|anti-sense L1PA8A_dup162|chr1:247137493-247138611:+|2.203458323758661|0.0971371035949119|4.5|151.0|48|2|anti-sense MSMS UPN47_class_I_Rep_3 4 529.252685546875 2 529.2531 1056.49165 NaN NaN NaN NaN NaN NaN NaN 29.461 1 32.784 32.284 33.284 3.3235 0 0 0 0.40746 1 4766 4766 0.69038 0 1 58279 14966 36806 36825 66997 66997 -0.034339213394332546 YTYKALRI 8 Unmodified _YTYKALRI_ 0 0 0 L1PB1_dup5321|chr6:117595399-117597448:-|1.5832605033501792|0.1081581556150547|3.87|151.0|26|2|sense L1PB1_dup5321|chr6:117595399-117597448:-|1.5832605033501792|0.1081581556150547|3.87|151.0|26|2|sense L1PB1_dup5321|chr6:117595399-117597448:-|1.5832605033501792|0.1081581556150547|3.87|151.0|26|2|sense MSMS UPN47_class_I_Rep_2 3 514.298095703125 2 514.300384 1026.58622 NaN NaN NaN NaN NaN NaN NaN 46.509 1 49.861 49.361 50.361 3.3515 0 0 0 0.40643 1 9900 9900 2.0598 0 1 58280 15141 36807 36826 66998 66998 0.07398637202550162 YTYKLFIF 8 Unmodified _YTYKLFIF_ 0 0 0 REV__MER6_dup680|chr14:49797796-49798626:+|1.887197265545522|0.3266534227305364|2.53|151.0|29|3|sense REV__MER6_dup680|chr14:49797796-49798626:+|1.887197265545522|0.3266534227305364|2.53|151.0|29|3|sense MSMS UPN48_class_I_Rep_2 6 547.7996826171875 2 547.799686 1093.58482 NaN NaN NaN NaN NaN NaN NaN 32.11 1 35.751 35.251 36.251 3.641 0 0 0 0.40738 1 4919 4919 0.79363 0 1 + 58281 31480 36808 36827 66999 66999 0.04177003113773026 YTYNEIFGN 9 Unmodified _YTYNEIFGN_ 0 0 0 L1MB8_dup10236|chr10:70416951-70417517:+|1.077704553462141|0.1838280800460247|2.55|151.0|2|1|sense L1MB8_dup10236|chr10:70416951-70417517:+|1.077704553462141|0.1838280800460247|2.55|151.0|2|1|sense L1MB8_dup10236|chr10:70416951-70417517:+|1.077704553462141|0.1838280800460247|2.55|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 560.7505493164062 2 560.750921 1119.48729 0.48202 0.00027029 0.029363 1.6465E-05 0.51138 0.00028676 560.7508323955393 77.504 0.55739 81.026 80.795 81.353 3.5221 76 51 3 0 0 0 0.46869 1 18386 18386 3.9444 0 1 189240 58282 10893 36809 36828 67000 67000 -0.06767430552986298 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MSMS UPN48_class_I_Rep_1 5 551.7874145507812 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.664 1 39.174 38.674 39.674 3.5101 0 0 0 0.25702 1 5862 5862 13.042 2.9685 1 58283 4997 36810 36829 67001 67001 0.0140116268012207 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MSMS UPN48_class_I_Rep_1 5 551.7877807617188 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.806 1 39.316 38.816 39.816 3.5101 0 0 0 0.2408 1 5905 5905 13.906 3.8321 1 58284 4997 36810 36829 67002 67002 0.0140116268012207 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MSMS UPN48_class_I_Rep_1 5 551.7863159179688 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.915 1 39.425 38.925 39.925 3.5101 0 0 0 0.37692 1 5936 5936 6.2058 0 1 58285 4997 36810 36829 67003 67003 0.0140116268012207 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MSMS UPN48_class_I_Rep_1 5 551.7888793945312 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.952 1 39.462 38.962 39.962 3.5101 0 0 0 0.2408 1 5946 5946 13.906 1.3745 1 58286 4997 36810 36829 67004 67004 0.0140116268012207 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS UPN48_class_I_Rep_2 6 551.7882690429688 2 551.787641 1101.56073 0.46938 0.000259 -0.39734 -0.00021925 0.072043 3.9752E-05 551.7873096962105 35.584 0.64963 39.272 38.907 39.557 3.6877 79 62 2 0 0 0 0.36392 2 5890 5832;5890 10.074 3.1773 1 80038 58287 4997 36810 36829 67005;67006 67006 0.0140116268012207 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MSMS UPN48_class_I_Rep_3 7 551.787109375 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.402 1 39.074 38.574 39.574 3.6721 0 0 0 0.31276 1 5734 5734 10.074 1.4806 1 58288 4997 36810 36829 67007 67007 0.0140116268012207 YTYRGPKAF 9 Unmodified _YTYRGPKAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MSMS UPN48_class_I_Rep_3 7 551.786865234375 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 35.538 1 39.205 38.705 39.705 3.6667 0 0 0 0.2408 1 5775 5775 13.906 1.3745 1 58289 4997 36810 36829 67008 67008 0.0140116268012207 YTYRTDQLR 9 Unmodified _YTYRTDQLR_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 405.87493896484375 3 405.875405 1214.60439 -0.47343 -0.00019215 0.06179 2.5079E-05 -0.41164 -0.00016707 405.8754600097724 29.47 0.67935 33.228 32.985 33.664 3.7578 75 51 2 0 0 0 0.46639 1 4716 4716 4.1895 0 1 80036 + 58290 27370 36811 36830 67009 67009 0.005667273866038158 YTYRTDQLR 9 Unmodified _YTYRTDQLR_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 406.20977783203125 3 405.875405 1214.60439 -1.0009 -0.00040625 0.57962 0.00023525 -0.4213 -0.00017099 405.8756795450279 29.748 0.60998 33.24 32.899 33.509 3.4923 84 50 2 0 0 0 0.42411 1 4770 4770 6.6304 0 1 67318 + 58291 27370 36811 36830 67010 67010 0.005667273866038158 YTYRTDQLR 9 Unmodified _YTYRTDQLR_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 406.20166015625 3 405.875405 1214.60439 -1.2929 -0.00052477 0.4382 0.00017785 -0.85474 -0.00034692 406.21000038817806 30.626 0.11518 33.938 33.862 33.977 3.3116 11 9 2 0 0 0 0.49458 1 5097 5097 1.1933 0 1 33041 + 58292 27370 36811 36830 67011 67011 0.005667273866038158 YTYRTDQLR 9 Unmodified _YTYRTDQLR_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 3 405.875405 1214.60439 -0.47343 -0.00019215 0.06179 2.5079E-05 -0.41164 -0.00016707 405.8754600097724 29.47 0.67935 33.228 32.985 33.664 3.7578 0.011584 -0.00042538 NaN 6.6304 75 51 2 NaN NaN NaN NaN 0 NaN NaN 0 80036 + 58293 27370 36811 36830 0.005667273866038158 YTYRTDQLR 9 Unmodified _YTYRTDQLR_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 3 405.875405 1214.60439 -1.0009 -0.00040625 0.57962 0.00023525 -0.4213 -0.00017099 405.8756795450279 29.748 0.60998 33.24 32.899 33.509 3.4923 0.023539 0.00020514 NaN 6.6304 84 50 2 NaN NaN NaN NaN 0 NaN NaN 0 67318 + 58294 27370 36811 36830 0.005667273866038158 YTYRTDQLR 9 Unmodified _YTYRTDQLR_ 0 0 0 REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense REV__L1MD1_dup6375|chr20:3973230-3975557:+|5.791126680118215|0.0420764174444623|7.1|151.0|68|3|sense MULTI-MATCH-MSMS UPN47_class_I_Rep_3 4 3 405.875405 1214.60439 -1.3023 -0.00052858 0.60066 0.00024379 -0.70165 -0.00028478 405.8757148918547 29.858 0.673 33.181 32.961 33.634 3.3235 -0.035122 0.00023076 NaN 6.6304 93 58 2 NaN NaN NaN NaN 0 NaN NaN 0 50818 + 58295 27370 36811 36830 0.005667273866038158 YTYTRIHVY 9 Unmodified _YTYTRIHVY_ 0 0 0 REV__L1ME3Cz_dup5290|chr7:76629495-76629993:+|1.0645929543562112|0.1705431951007754|2.64|151.0|15|3|sense REV__L1ME3Cz_dup5290|chr7:76629495-76629993:+|1.0645929543562112|0.1705431951007754|2.64|151.0|15|3|sense MSMS UPN47_class_I_Rep_3 4 405.8752746582031 3 405.876746 1214.60841 NaN NaN NaN NaN NaN NaN NaN 30.533 1 33.845 33.345 34.345 3.3116 0 0 0 0.39887 1 5082 5082 0.96228 0 1 + 58296 28124 36812 36831 67012 67012 0.009688168803222652 YTYWKFFRKFW 11 Unmodified _YTYWKFFRKFW_ 0 0 0 REV__Tigger3b_dup60|chr1:41051100-41052181:+|1.2259230990516223|0.1249549561864871|3.29|151.0|45|1|anti-sense REV__Tigger3b_dup60|chr1:41051100-41052181:+|1.2259230990516223|0.1249549561864871|3.29|151.0|45|1|anti-sense MSMS UPN46_class_I_Rep_3 1 557.9520263671875 3 557.953878 1670.8398 NaN NaN NaN NaN NaN NaN NaN 50.179 1 50.179 49.679 50.679 0 0 0 0 0.38417 1 10592 10592 0 0 1 + 58297 32765 36813 36832 67013 67013 0.03121864581976297 YTYYYLIY 8 Unmodified _YTYYYLIY_ 0 0 0 L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.2791748046875 2 581.278783 1160.54301 0.16191 9.4113E-05 0.22508 0.00013083 0.38698 0.00022494 581.2788360791114 47.666 0.78136 51.361 50.989 51.77 3.6951 111 70 2 0 0 0 0.82752 2 10158 10158;10230 28.173 28.173 1 453860 58298 11496 36814 36833 67014;67015 67014 -0.03083597365366586 YTYYYLIY 8 Unmodified _YTYYYLIY_ 0 0 0 L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 581.279052734375 2 581.278783 1160.54301 0.45459 0.00026424 -0.93955 -0.00054614 -0.48497 -0.0002819 581.2781785462657 50.449 1.1102 53.792 53.121 54.232 3.3431 84 59 2 0 0 0 0.82752 1 11200 11200 2.5775 0.27475 1 80005 58299 11496 36814 36833 67016 67016 -0.03083597365366586 YTYYYLIY 8 Unmodified _YTYYYLIY_ 0 0 0 L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense L1MC4_dup413|chr1:45649156-45649669:-|1.9140478089665445|0.171897940156241|3.48|151.0|29|2|anti-sense MSMS UPN47_class_I_Rep_3 4 581.2774047851562 2 581.278783 1160.54301 NaN NaN NaN NaN NaN NaN NaN 50.827 1 54.043 53.543 54.543 3.2163 0 0 0 0.40604 1 11262 11262 2.5775 0 1 58300 11496 36814 36833 67017 67017 -0.03083597365366586 YVAFIWTA 8 Unmodified _YVAFIWTA_ 0 0 0 L1ME3Cz_dup1014|chr2:24091461-24091949:+|2.185704468943124|0.0718263571398235|4.93|151.0|23|1|anti-sense L1ME3Cz_dup1014|chr2:24091461-24091949:+|2.185704468943124|0.0718263571398235|4.93|151.0|23|1|anti-sense L1ME3Cz_dup1014|chr2:24091461-24091949:+|2.185704468943124|0.0718263571398235|4.93|151.0|23|1|anti-sense MSMS UPN48_class_I_Rep_3 7 485.7560119628906 2 485.755278 969.496004 NaN NaN NaN NaN NaN NaN NaN 19.586 1 23.208 22.708 23.708 3.6215 0 0 0 0.40798 1 1507 1507 0 0 1 58301 12756 36815 36834 67018 67018 0.01003587874117784 YVAKASPEL 9 Unmodified _YVAKASPEL_ 0 0 0 AluJr_dup67147|chr16:22403686-22403987:-|1.4013635940424558|0.0660097381258812|4.41|151.0|21|3|anti-sense AluJr_dup67147|chr16:22403686-22403987:-|1.4013635940424558|0.0660097381258812|4.41|151.0|21|3|anti-sense AluJr_dup67147|chr16:22403686-22403987:-|1.4013635940424558|0.0660097381258812|4.41|151.0|21|3|anti-sense MSMS UPN48_class_I_Rep_1 5 489.2686767578125 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 36.935 1 40.442 39.942 40.942 3.507 0 0 0 0.28335 1 6223 6223 11.64 1.4569 1 58302 171 36816 36835 67019 67019 0.033746516946507654 YVAKKHMKE 9 Unmodified _YVAKKHMKE_ 0 0 0 L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|35|1|sense;L1P3_dup1479|chr7:26764850-26770911:-|5.103617207130673|0.0628493276076669|6.34|151.0|167|3|sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|35|1|sense L1PA7_dup5916|chr7:30338277-30342601:-|3.4916716004890374|0.03807713972342|6.52|151.0|35|1|sense MSMS UPN48_class_I_Rep_2 6 567.3128662109375 2 567.310426 1132.6063 NaN NaN NaN NaN NaN NaN NaN 72.971 1 76.535 76.035 77.035 3.5645 0 0 0 0.35339 1 17111 17111 7.9102 0.62092 1 58303 13518 36817 36836 67020 67020 0.04530064870846218 YVAKTRLTK 9 Unmodified _YVAKTRLTK_ 0 0 0 L1PB1_dup2009|chr3:25770450-25772221:-|1.231352919115593|0.0266550108357506|5.53|151.0|10|1|sense L1PB1_dup2009|chr3:25770450-25772221:-|1.231352919115593|0.0266550108357506|5.53|151.0|10|1|sense L1PB1_dup2009|chr3:25770450-25772221:-|1.231352919115593|0.0266550108357506|5.53|151.0|10|1|sense MSMS UPN46_class_I_Rep_3 1 540.3308715820312 2 540.332216 1078.64988 NaN NaN NaN NaN NaN NaN NaN 83.259 1 83.259 82.759 83.759 0 0 0 0 0.4029 1 19767 19767 0 0 1 58304 15065 36818 36837 67021 67021 0.1136999763964468 YVALIHGIT 9 Unmodified _YVALIHGIT_ 0 0 0 nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH nc|ENSG00000198130|Q6NVY1-2|HIBCH nc|ENSG00000198130|Q6NVY1-2|HIBCH MULTI-MSMS UPN48_class_I_Rep_3 7 493.7875061035156 2 493.78711 985.559667 0.14892 7.3537E-05 0.29053 0.00014346 0.43945 0.000217 493.78726185670564 56.372 0.76396 59.914 59.543 60.307 3.5427 107 71 2 0 0 0 0.12799 1 12129 12129 28.487 0 1 205450 58305 5413 36819 36838 67022 67022 0.06630948311226348 YVANEFLKY 9 Unmodified _YVANEFLKY_ 0 0 0 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 MULTI-MSMS UPN47_class_I_Rep_1 2 573.7962646484375 2 573.795132 1145.57571 0.33164 0.00019029 0.13384 7.6797E-05 0.46548 0.00026709 573.7956964018227 55.658 0.57175 59.136 58.845 59.416 3.4785 77 34 3 0 0 0 0.19147 1 12699 12699 21.537 8.0291 1 100730 58306 2578 36820 36839 67023 67023 0.008746097574658052 YVANEFLKY 9 Unmodified _YVANEFLKY_ 0 0 0 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 MULTI-MSMS UPN47_class_I_Rep_3 4 573.7940063476562 2 573.795132 1145.57571 0.4056 0.00023273 0.36436 0.00020907 0.76996 0.0004418 573.7956695872214 56.175 0.64109 59.347 58.941 59.582 3.1721 96 44 3 0 0 0 0.23293 2 12835 12825;12835 18.146 8.7632 1 120870 58307 2578 36820 36839 67024;67025 67025 0.008746097574658052 YVANEFLKY 9 Unmodified _YVANEFLKY_ 0 0 0 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 MULTI-MATCH UPN47_class_I_Rep_2 3 2 573.795132 1145.57571 0.51815 0.00029731 1.0561 0.00060598 1.5742 0.00090329 573.7957465076067 55.971 0.69258 59.281 58.929 59.622 3.3102 0.026261 0.00059402 NaN 21.537 61 41 2 NaN NaN NaN NaN 0 NaN NaN 0 94922 58308 2578 36820 36839 0.008746097574658052 YVASDGLEL 9 Unmodified _YVASDGLEL_ 0 0 0 REV__nc|ENSG00000237702|A0A576|TRBV3-1 REV__nc|ENSG00000237702|A0A576|TRBV3-1 MULTI-MSMS UPN47_class_I_Rep_2 3 483.7425537109375 2 483.742565 965.470577 0.064223 3.1067E-05 -0.086121 -4.166E-05 -0.021898 -1.0593E-05 483.742428791502 46.889 1.0416 50.24 49.827 50.869 3.3515 222 71 4 0 0 0 0.28552 1 9939 9939 14.838 0 1 1214200 + 58309 32114 36821 36840 67026 67026 -0.013539314389618085 YVASDGLEL 9 Unmodified _YVASDGLEL_ 0 0 0 REV__nc|ENSG00000237702|A0A576|TRBV3-1 REV__nc|ENSG00000237702|A0A576|TRBV3-1 MULTI-MSMS UPN47_class_I_Rep_3 4 483.7425842285156 2 483.742565 965.470577 0.0061026 2.9521E-06 -0.066631 -3.2232E-05 -0.060528 -2.928E-05 483.74245566486627 46.945 1.0336 50.189 49.798 50.831 3.2439 183 66 4 0 0 0 0.35081 2 10007 10007;10220 10.824 0 1 1396700 + 58310 32114 36821 36840 67027;67028 67027 -0.013539314389618085 YVCHIFFIQP 10 Unmodified _YVCHIFFIQP_ 0 0 0 L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|305|3|anti-sense L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|305|3|anti-sense L1PA7_dup1251|chr2:97872471-97878856:+|1.015879512810968|0.0530306680417919|4.26|151.0|305|3|anti-sense MSMS UPN47_class_I_Rep_2 3 633.8223266601562 2 633.820627 1265.6267 NaN NaN NaN NaN NaN NaN NaN 60.587 1 63.852 63.352 64.352 3.2654 0 0 0 0.53105 1 14187 14187 3.5965 0 1 58311 14750 36822 36841 67029 67029 0.004512355306815152 YVCRCKQGYI 10 Unmodified _YVCRCKQGYI_ 0 0 0 nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2 nc|ENSG00000132561|O00339-3|MATN2 nc|ENSG00000132561|O00339-3|MATN2 MULTI-MSMS UPN48_class_I_Rep_2 6 617.3021240234375 2 616.799368 1231.58418 0.58553 0.00036116 2.7137 0.0016738 3.2992 0.0020349 616.8010506609127 58.215 0.30778 61.714 61.577 61.885 3.4987 24 17 2 0 0 0 0.54466 1 12696 12696 6.2058 0.47393 1 80302 58312 2765 36823 36842 67030 67030 -0.02234482869198473 YVDDIFLRV 9 Unmodified _YVDDIFLRV_ 0 0 0 ENST00000494467.1_1_9:107587931-107593243:-|nuORF;ENSG00000165029|ENST00000374736|ABCA1 ENST00000494467.1_1_9:107587931-107593243:-|nuORF ENST00000494467.1_1_9:107587931-107593243:-|nuORF MULTI-SECPEP UPN47_class_I_Rep_1 2 570.2481689453125 2 570.308406 1138.60226 0.33905 0.00019336 0.14757 8.4158E-05 0.48661 0.00027752 570.3083043900104 69.588 0.22025 72.956 72.886 73.106 3.3678 25 20 2 0 0 0 0.11884 1 16871 16871 9.3831 5.4387 1 65881 58313 4150 36824 36843 67031 67031 0.03850298648762873 YVDDIFLRV 9 Unmodified _YVDDIFLRV_ 0 0 0 ENST00000494467.1_1_9:107587931-107593243:-|nuORF;ENSG00000165029|ENST00000374736|ABCA1 ENST00000494467.1_1_9:107587931-107593243:-|nuORF ENST00000494467.1_1_9:107587931-107593243:-|nuORF MSMS UPN47_class_I_Rep_2 3 570.3084106445312 2 570.308406 1138.60226 NaN NaN NaN NaN NaN NaN NaN 69.939 1 73.215 72.715 73.715 3.2761 0 0 0 0.25702 1 17012 17012 13.042 7.8118 1 58314 4150 36824 36843 67032 67032 0.03850298648762873 YVDDKGKSTE 10 Unmodified _YVDDKGKSTE_ 0 0 0 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 REV__nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS UPN46_class_I_Rep_3 1 571.7742919921875 2 571.272218 1140.52988 -0.12693 -7.2513E-05 0.43966 0.00025116 0.31273 0.00017865 571.2716300028951 13.219 0.14508 13.219 13.132 13.277 0 25 14 3 0 0 0 0.56354 1 330 330 1.3295 0 1 40267 + 58315 18565 36825 36844 67033 67033 -0.034760802154323756 YVDDQLFVF 9 Unmodified _YVDDQLFVF_ 0 0 0 nc|ENSG00000010704|Q30201-9|HFE;ENST00000486147.1_1_6:26087668-26093021:+|nuORF;ENST00000483782.1_1_6:26087668-26091517:+|nuORF;nc|ENSG00000010704|Q30201-10|HFE;nc|ENSG00000010704|Q30201-7|HFE;nc|ENSG00000010704|Q30201-8|HFE;nc|ENSG00000010704|Q30201-5|HFE;nc|ENSG00000010704|Q30201-3|HFE;ENSG00000010704|ENST00000357618|HFE nc|ENSG00000010704|Q30201-9|HFE nc|ENSG00000010704|Q30201-9|HFE MULTI-MSMS UPN48_class_I_Rep_2 6 574.2947387695312 2 573.279315 1144.54408 0.47674 0.00027331 1.4035 0.00080458 1.8802 0.0010779 573.2800574925318 77.331 0.65227 80.943 80.589 81.241 3.6116 130 62 3 0 0 0 0.21527 1 18247 18247 19.257 4.0085 1 440480 58316 762 36826 36845 67034 67034 -0.022413829964989418 YVDDVFLRV 9 Unmodified _YVDDVFLRV_ 0 0 0 nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 MULTI-MSMS UPN47_class_I_Rep_1 2 563.3001708984375 2 563.300581 1124.58661 0.36122 0.00020348 -0.68845 -0.0003878 -0.32722 -0.00018433 563.3000964519123 65.13 0.55772 68.486 68.235 68.792 3.3557 53 37 2 0 0 0 0.10568 1 15513 15513 32.786 18.88 1 104270 58317 994 36827 36846 67035 67035 0.02930012131719195 YVDDVFLRV 9 Unmodified _YVDDVFLRV_ 0 0 0 nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 MSMS UPN47_class_I_Rep_1 2 563.30126953125 2 563.300581 1124.58661 NaN NaN NaN NaN NaN NaN NaN 64.994 1 68.35 67.85 68.85 3.3557 0 0 0 0.040938 1 15473 15473 40.239 23.126 1 58318 994 36827 36846 67036 67036 0.02930012131719195 YVDDVFLRV 9 Unmodified _YVDDVFLRV_ 0 0 0 nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 MULTI-MATCH UPN47_class_I_Rep_2 3 2 563.300581 1124.58661 0.37545 0.00021149 -0.61528 -0.00034659 -0.23982 -0.00013509 563.3003284878398 65.329 0.48801 68.585 68.342 68.83 3.2556 0.093121 -1.6645E-05 NaN 32.786 55 35 2 NaN NaN NaN NaN 0 NaN NaN 0 96422 58319 994 36827 36846 0.02930012131719195 YVDDVFLRV 9 Unmodified _YVDDVFLRV_ 0 0 0 nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 nc|ENSG00000064687|Q8IZY2-2|ABCA7 MULTI-MATCH UPN47_class_I_Rep_3 4 2 563.300581 1124.58661 0.43318 0.00024401 -0.38557 -0.00021719 0.04761 2.6819E-05 563.3002169907705 65.225 0.15175 68.404 68.271 68.423 3.1795 -0.08747 0.00024214 NaN 32.786 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 56261 58320 994 36827 36846 0.02930012131719195 YVDISDIYI 9 Unmodified _YVDISDIYI_ 0 0 0 Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|54|1|anti-sense Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|54|1|anti-sense Tigger2_dup655|chr3:167699775-167701378:+|1.1220462748938869|0.2050327175050118|2.45|151.0|54|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.7805786132812 2 550.779148 1099.54374 0.48928 0.00026949 1.002 0.00055186 1.4912 0.00082134 550.7796971891042 51.196 0.59756 54.864 54.575 55.173 3.6679 69 40 2 0 0 0 0.32219 1 10539 10539 12.532 0 1 179470 58321 33324 36828 36847 67037 67037 -0.002048027163482402 YVDKPYPL 8 Unmodified _YVDKPYPL_ 0 0 0 REV__ENST00000475443.1_1_10:103360520-103368624:+|nuORF REV__ENST00000475443.1_1_10:103360520-103368624:+|nuORF MSMS UPN47_class_I_Rep_2 3 497.76605224609375 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 111.94 1 115.47 114.97 115.97 3.5226 0 0 0 0.40738 1 27264 27264 0.79363 0 1 + 58322 20156 36829 36848 67038 67038 0.02011553182978787 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_1 2 573.27978515625 2 573.279315 1144.54408 0.34413 0.00019728 0.070547 4.0443E-05 0.41468 0.00023773 573.2795286110909 70.899 2.8896 74.27 73.831 76.721 3.3713 618 230 5 0 0 0 0.0057802 20 17296 17143;17184;17221;17259;17296;17332;17374;17413;17456;17493;17535;17619;17661;17706;17751;17790;17828;17889;17947;17957 128.93 66.36 1 11323000 58323 5495 36830 36849 67039;67040;67041;67042;67043;67044;67045;67046;67047;67048;67049;67050;67051;67052;67053;67054;67055;67056;67057;67058 67043 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 573.27978515625 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.464 1 76.85 76.35 77.35 3.3861 0 0 0 0.18341 1 18041 18041 17.443 3.5366 1 58324 5495 36830 36849 67059 67059 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 573.2784423828125 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.599 1 76.985 76.485 77.485 3.3861 0 0 0 0.18341 1 18078 18078 17.443 3.5366 1 58325 5495 36830 36849 67060 67060 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 573.2789916992188 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.726 1 77.112 76.612 77.612 3.3861 0 0 0 0.18341 1 18115 18115 17.443 3.5366 1 58326 5495 36830 36849 67061 67061 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 573.2783813476562 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.866 1 77.252 76.752 77.752 3.3861 0 0 0 0.37891 1 18155 18155 5.7319 2.4505 1 58327 5495 36830 36849 67062 67062 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 573.2803955078125 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.878 1 77.264 76.764 77.764 3.3861 0 0 0 0.31132 1 18159 18159 10.151 0.076642 1 58328 5495 36830 36849 67063 67063 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_1 2 573.2789916992188 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 74.059 1 77.446 76.946 77.946 3.3861 0 0 0 0.10427 1 18213 18213 23.79 5.6434 1 58329 5495 36830 36849 67064 67064 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_2 3 573.2794189453125 2 573.279315 1144.54408 0.41896 0.00024018 -0.034195 -1.9604E-05 0.38476 0.00022058 573.2795194103155 71.131 2.2415 74.414 73.951 76.192 3.2828 640 202 5 0 0 0 0.0058741 18 17547 17279;17319;17357;17393;17430;17468;17506;17547;17588;17624;17661;17699;17738;17777;17817;17830;17858;17896 117.76 63.928 1 11714000 58330 5495 36830 36849 67065;67066;67067;67068;67069;67070;67071;67072;67073;67074;67075;67076;67077;67078;67079;67080;67081;67082 67072 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_2 3 573.2786865234375 2 573.279315 1144.54408 0.43635 0.00025015 0.17948 0.00010289 0.61582 0.00035304 573.2790129116202 72.979 0.45886 76.276 76.207 76.665 3.2971 50 35 2 0 0 0 0.073198 3 17922 17910;17922;17966 40.239 15.248 1 70365 58331 5495 36830 36849 67083;67084;67085 67084 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2781982421875 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.449 1 76.753 76.253 77.253 3.3048 0 0 0 0.087549 1 18059 18059 27.223 3.2027 1 58332 5495 36830 36849 67086 67086 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2785034179688 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.584 1 76.888 76.388 77.388 3.3048 0 0 0 0.11743 1 18101 18101 21.59 3.4438 1 58333 5495 36830 36849 67087 67087 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2782592773438 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.722 1 77.027 76.527 77.527 3.3048 0 0 0 0.11743 1 18142 18142 21.59 3.4438 1 58334 5495 36830 36849 67088 67088 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2801513671875 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.858 1 77.163 76.663 77.663 3.3048 0 0 0 0.16861 1 18181 18181 18.373 0.22675 1 58335 5495 36830 36849 67089 67089 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2778930664062 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.884 1 77.188 76.688 77.688 3.3048 0 0 0 0.11743 1 18187 18187 21.59 3.4438 1 58336 5495 36830 36849 67090 67090 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2771606445312 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 74.019 1 77.323 76.823 77.823 3.3048 0 0 0 0.11743 1 18226 18226 21.59 3.4438 1 58337 5495 36830 36849 67091 67091 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.279541015625 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 74.074 1 77.379 76.879 77.879 3.3048 0 0 0 0.16861 1 18241 18241 18.373 0.22675 1 58338 5495 36830 36849 67092 67092 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_2 3 573.2798461914062 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 74.46 1 77.772 77.272 78.272 3.3127 0 0 0 0.18341 1 18349 18349 17.443 3.0373 1 58339 5495 36830 36849 67093 67093 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_3 4 573.2796020507812 2 573.279315 1144.54408 0.44926 0.00025755 -0.023282 -1.3347E-05 0.42598 0.0002442 573.279492006543 71.193 2.1994 74.411 73.86 76.059 3.2188 576 187 5 0 0 0 0.0069771 18 17391 17318;17355;17391;17428;17463;17500;17536;17575;17614;17652;17690;17725;17767;17811;17852;17856;17896;17915 140.63 64.872 1 11103000 58340 5495 36830 36849 67094;67095;67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107;67108;67109;67110;67111 67096 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_3 4 573.2794799804688 2 573.279315 1144.54408 0.45535 0.00026104 -0.19267 -0.00011045 0.26268 0.00015059 573.2791757328745 73.746 0.2821 76.982 76.91 77.192 3.2363 35 27 2 0 0 0 0.13455 2 18283 18237;18283 27.223 7.8613 1 65527 58341 5495 36830 36849 67112;67113 67113 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS UPN47_class_I_Rep_3 4 573.2680053710938 2 573.279315 1144.54408 0.45762 0.00026235 1.2366 0.00070892 1.6942 0.00097126 573.2800071218327 74.678 0.26492 77.924 77.821 78.086 3.2464 39 27 2 0 0 0 0.16799 1 18517 18517 23.79 4.4278 1 43167 58342 5495 36830 36849 67114 67114 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 573.279541015625 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 72.955 1 76.183 75.683 76.683 3.2271 0 0 0 0.040938 1 17988 17988 40.239 16.219 1 58343 5495 36830 36849 67115 67115 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 573.2808227539062 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.088 1 76.315 75.815 76.815 3.2271 0 0 0 0.087549 1 18028 18028 27.223 3.2027 1 58344 5495 36830 36849 67116 67116 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 573.2789306640625 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.167 1 76.394 75.894 76.894 3.2271 0 0 0 0.11743 1 18052 18052 21.59 3.4438 1 58345 5495 36830 36849 67117 67117 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 573.2779541015625 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.462 1 76.698 76.198 77.198 3.2363 0 0 0 0.11743 1 18143 18143 21.59 3.4438 1 58346 5495 36830 36849 67118 67118 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 573.2794189453125 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.508 1 76.744 76.244 77.244 3.2363 0 0 0 0.11743 1 18157 18157 21.59 3.4438 1 58347 5495 36830 36849 67119 67119 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MSMS UPN47_class_I_Rep_3 4 573.278564453125 2 573.279315 1144.54408 NaN NaN NaN NaN NaN NaN NaN 73.631 1 76.867 76.367 77.367 3.2363 0 0 0 0.11743 1 18195 18195 21.59 3.4438 1 58348 5495 36830 36849 67120 67120 -0.022413829964762044 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 MULTI-MSMS UPN46_class_I_Rep_3 1 523.7979736328125 2 523.797675 1045.5808 0.25092 0.00013143 -0.46292 -0.00024248 -0.212 -0.00011105 523.7973938841628 55.057 0.4036 55.057 54.777 55.181 0 72 46 2 0 0 0 0.17897 3 11941 11904;11941;11976 22.736 8.9574 1 428500 58349 3199 36831 36850 67121;67122;67123 67122 0.059829136200733046 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 MSMS UPN48_class_I_Rep_1 5 523.7977294921875 2 523.797675 1045.5808 NaN NaN NaN NaN NaN NaN NaN 49.929 1 53.454 52.954 53.954 3.5246 0 0 0 0.2408 1 10143 10143 13.906 4.5586 1 58350 3199 36831 36850 67124 67124 0.059829136200733046 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 MULTI-MSMS UPN48_class_I_Rep_2 6 523.798095703125 2 523.797675 1045.5808 0.33219 0.000174 -0.14523 -7.6072E-05 0.18696 9.7927E-05 523.7975950882562 49.575 0.48881 53.27 53.092 53.581 3.6946 37 29 2 0 0 0 0.30034 1 10042 10042 13.906 5.9959 1 116750 58351 3199 36831 36850 67125 67125 0.059829136200733046 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-4|PDPK1 MULTI-MATCH UPN48_class_I_Rep_3 7 2 523.797675 1045.5808 0.32341 0.0001694 0.1866 9.774E-05 0.51001 0.00026714 523.7976479763006 49.785 0.46706 53.406 53.15 53.617 3.621 0.068092 0.00011764 NaN 13.906 41 32 2 NaN NaN NaN NaN 0 NaN NaN 0 83328 58352 3199 36831 36850 0.059829136200733046 YVEDTFTII 9 Unmodified _YVEDTFTII_ 0 0 0 REV__L1MEf_dup277|chr1:93219767-93220621:+|1.5101231102696928|0.1910025595680859|2.98|151.0|30|3|sense REV__L1MEf_dup277|chr1:93219767-93220621:+|1.5101231102696928|0.1910025595680859|2.98|151.0|30|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.7791748046875 2 550.779148 1099.54374 0.29812 0.0001642 0.97175 0.00053522 1.2699 0.00069942 550.7794461277292 51.102 0.64613 54.695 54.271 54.917 3.5933 43 30 2 0 0 0 0.40174 1 11226 11226 7.9102 0 1 81964 + 58353 28624 36832 36851 67126 67126 -0.0020480271632550284 YVEDTFVYY 9 Unmodified _YVEDTFVYY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_1 2 599.7686767578125 2 599.76878 1197.52301 0.36814 0.0002208 -0.18109 -0.00010861 0.18706 0.00011219 599.7687939501874 69.015 0.51894 72.382 72.156 72.675 3.3678 54 40 2 0 0 0 0.18929 4 16703 16703;16733;16743;16766 21.747 13.591 1 96691 58354 2763 36833 36852 67127;67128;67129;67130 67127 -0.06785393095992731 YVEDTFVYY 9 Unmodified _YVEDTFVYY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_2 3 599.7684936523438 2 599.76878 1197.52301 0.40009 0.00023996 -0.12674 -7.6016E-05 0.27335 0.00016395 599.7686426030144 69.191 0.5499 72.467 72.27 72.82 3.2761 66 43 2 0 0 0 0.12799 3 16797 16754;16797;16835 28.487 15.955 1 101970 58355 2763 36833 36852 67131;67132;67133 67132 -0.06785393095992731 YVEDTFVYY 9 Unmodified _YVEDTFVYY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MSMS UPN47_class_I_Rep_2 3 599.7688598632812 2 599.76878 1197.52301 NaN NaN NaN NaN NaN NaN NaN 68.952 1 72.221 71.721 72.721 3.2696 0 0 0 0.36505 1 16717 16717 7.2892 0.93513 1 58356 2763 36833 36852 67134 67134 -0.06785393095992731 YVEDTFVYY 9 Unmodified _YVEDTFVYY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS UPN47_class_I_Rep_3 4 599.7674560546875 2 599.76878 1197.52301 0.44786 0.00026861 -0.26085 -0.00015645 0.18702 0.00011217 599.7686035149544 69.257 0.64318 72.462 72.206 72.849 3.2044 81 51 2 0 0 0 0.18929 6 16827 16827;16833;16857;16877;16916;16957 21.747 10.106 1 99480 58357 2763 36833 36852 67135;67136;67137;67138;67139;67140 67135 -0.06785393095992731 YVEDTFVYY 9 Unmodified _YVEDTFVYY_ 0 0 0 ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B ENSG00000132549|ENST00000357162|VPS13B ENSG00000132549|ENST00000357162|VPS13B MSMS UPN47_class_I_Rep_3 4 599.7681274414062 2 599.76878 1197.52301 NaN NaN NaN NaN NaN NaN NaN 69.759 1 72.963 72.463 73.463 3.2044 0 0 0 0.19137 1 17028 17028 16.942 4.7016 1 58358 2763 36833 36852 67141 67141 -0.06785393095992731 YVEHHRRK 8 Unmodified _YVEHHRRK_ 0 0 0 REV__L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|98|3|sense REV__L1MEf_dup11336|chr20:41582521-41585222:+|2.175772808936404|0.0414489434578522|5.71|151.0|98|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 562.8062744140625 2 562.807231 1123.59991 -0.20602 -0.00011595 -1.0584 -0.0005957 -1.2645 -0.00071165 562.8066716058081 28.745 0.56718 32.079 31.79 32.357 3.3337 64 47 2 0 0 0 0.82752 1 4508 4508 2.3027 0 1 70601 + 58359 28603 36834 36853 67142 67142 0.0430530775436182 YVEHYPLA 8 Unmodified _YVEHYPLA_ 0 0 0 REV__ENSG00000011028|ENST00000303375|MRC2 REV__ENSG00000011028|ENST00000303375|MRC2 MSMS UPN47_class_I_Rep_2 3 496.2951965332031 2 496.247818 990.481082 NaN NaN NaN NaN NaN NaN NaN 15.577 1 18.963 18.463 19.463 3.3864 0 0 0 0.40746 1 846 846 0.69038 0 1 + 58360 17576 36835 36854 67143 67143 -0.014539039938767928 YVEIDKLF 8 Unmodified _YVEIDKLF_ 0 0 0 L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|22|1|sense L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|22|1|sense L1MB7_dup15768|chr12:46690316-46693423:+|1.2320913883252431|0.036641205903157|5.07|151.0|22|1|sense MSMS UPN48_class_I_Rep_3 7 513.7783203125 2 513.778951 1025.54335 NaN NaN NaN NaN NaN NaN NaN 119.56 1 123.13 122.63 123.63 3.566 0 0 0 0.40746 1 28414 28414 0.69038 0 1 58361 10724 36836 36855 67144 67144 0.031598223544506254 YVEKFALNY 9 Unmodified _YVEKFALNY_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS UPN47_class_I_Rep_1 2 573.7954711914062 2 573.795132 1145.57571 0.30413 0.00017451 0.12071 6.9263E-05 0.42484 0.00024377 573.7950439364812 53.871 1.1017 57.399 57.036 58.137 3.5278 147 58 4 0 0 0 0.0053074 6 12090 12051;12090;12129;12171;12217;12257 83.429 32.574 1 402880 58362 2514 36837 36856 67145;67146;67147;67148;67149;67150 67146 0.008746097574658052 YVEKFALNY 9 Unmodified _YVEKFALNY_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS UPN47_class_I_Rep_2 3 573.794677734375 2 573.795132 1145.57571 0.5172 0.00029677 -0.13328 -7.6476E-05 0.38392 0.00022029 573.7949576932643 54.125 1.1669 57.444 57.108 58.275 3.3187 145 61 3 0 0 0 0.006303 7 12187 12149;12187;12229;12272;12322;12373;12407 107.1 39.756 1 519870 58363 2514 36837 36856 67151;67152;67153;67154;67155;67156;67157 67152 0.008746097574658052 YVEKFALNY 9 Unmodified _YVEKFALNY_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS UPN47_class_I_Rep_3 4 573.7947998046875 2 573.795132 1145.57571 0.45656 0.00026197 -0.014612 -8.384E-06 0.44195 0.00025359 573.7949921708724 54.34 1.047 57.525 57.146 58.193 3.1856 149 61 3 0 0 0 0.0055684 7 12289 12247;12289;12328;12373;12416;12482;12515 83.429 31.16 1 421750 58364 2514 36837 36856 67158;67159;67160;67161;67162;67163;67164 67159 0.008746097574658052 YVELFSAF 8 Unmodified _YVELFSAF_ 0 0 0 REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|117|1|anti-sense REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|117|1|anti-sense MSMS UPN48_class_I_Rep_3 7 488.2319030761719 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 73.203 1 76.741 76.241 77.241 3.5373 0 0 0 0.40404 1 17116 17116 5.2307 0 1 + 58365 28638 36838 36857 67165 67165 -0.013324222253800144 YVELFSAF 8 Unmodified _YVELFSAF_ 0 0 0 REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|117|1|anti-sense REV__L1MEf_dup4649|chr6:156219447-156221779:+|1.286554165718469|0.0046349398895763|8.12|149.0|117|1|anti-sense MSMS UPN48_class_I_Rep_3 7 488.2323303222656 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 73.326 1 76.863 76.363 77.363 3.5373 0 0 0 0.39624 1 17149 17149 9.3474 0 1 + 58366 28638 36838 36857 67166 67166 -0.013324222253800144 YVEMLIFY 8 Unmodified _YVEMLIFY_ 0 0 0 REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|58|2|anti-sense REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_1 5 539.2708740234375 2 539.269904 1076.52526 NaN NaN NaN NaN NaN NaN NaN 45.055 1 48.572 48.072 49.072 3.5162 0 0 0 0.39408 1 8648 8648 10.183 0.83596 1 + 58367 24631 36839 36858 67167 67167 -0.00994635891879625 YVEMLIFY 8 Unmodified _YVEMLIFY_ 0 0 0 REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|58|2|anti-sense REV__L1M5_dup19543|chr6:34305326-34306236:-|2.964083543372175|0.0471185095801143|5.98|151.0|58|2|anti-sense MSMS UPN48_class_I_Rep_2 6 539.2716064453125 2 539.269904 1076.52526 NaN NaN NaN NaN NaN NaN NaN 44.638 1 48.399 47.899 48.899 3.7617 0 0 0 0.39408 1 8529 8529 10.183 0.83596 1 + 58368 24631 36839 36858 67168 67168 -0.00994635891879625 YVEYVLKL 8 Unmodified _YVEYVLKL_ 0 0 0 ENST00000229395.7_1_12:27118819-27118963:+|nuORF ENST00000229395.7_1_12:27118819-27118963:+|nuORF ENST00000229395.7_1_12:27118819-27118963:+|nuORF MSMS UPN47_class_I_Rep_2 3 513.8070678710938 2 513.797143 1025.57973 NaN NaN NaN NaN NaN NaN NaN 90.431 1 93.888 93.388 94.388 3.4571 0 0 0 0.40746 1 22436 22436 0.69038 0 1 58369 5881 36840 36859 67169 67169 0.067966992511856 YVFAVSYL 8 Unmodified _YVFAVSYL_ 0 0 0 REV__L1PREC2_dup7332|chr19:21831659-21832594:+|1.2284372468014102|0.0431500483160603|4.83|151.0|59|3|anti-sense REV__L1PREC2_dup7332|chr19:21831659-21832594:+|1.2284372468014102|0.0431500483160603|4.83|151.0|59|3|anti-sense MSMS UPN48_class_I_Rep_1 5 481.2546691894531 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 35.528 1 39.038 38.538 39.538 3.5101 0 0 0 0.40625 1 5822 5822 2.3027 0 1 + 58370 30435 36841 36860 67170 67170 0.013841681542771767 YVFCPLFNG 9 Unmodified _YVFCPLFNG_ 0 0 0 L1PB4_dup4342|chrX:77603692-77605150:+|1.1045649980709562|0.0299850132734449|5.2|151.0|94|3|anti-sense;L1PA13_dup6779|chr12:1333631-1335882:-|2.2803025640277235|0.0368052757860188|5.95|150.0|110|2|anti-sense L1PB4_dup4342|chrX:77603692-77605150:+|1.1045649980709562|0.0299850132734449|5.2|151.0|94|3|anti-sense L1PB4_dup4342|chrX:77603692-77605150:+|1.1045649980709562|0.0299850132734449|5.2|151.0|94|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 530.2516479492188 2 530.252046 1058.48954 -0.47968 -0.00025435 -0.17252 -9.1482E-05 -0.65221 -0.00034583 530.2518110196295 14.607 0.35047 17.977 17.854 18.205 3.3697 57 41 2 0 0 0 0.48846 1 595 595 1.8442 0 1 50529 58371 13778 36842 36861 67171 67171 -0.037366733489079706 YVFDVLGY 8 Unmodified _YVFDVLGY_ 0 0 0 REV__L1M3_dup649|chr2:97500001-97500838:+|1.1065244987597704|0.1478829413038724|2.9|151.0|51|3|anti-sense REV__L1M3_dup649|chr2:97500001-97500838:+|1.1065244987597704|0.1478829413038724|2.9|151.0|51|3|anti-sense MSMS UPN48_class_I_Rep_2 6 488.24212646484375 2 488.244744 974.474934 NaN NaN NaN NaN NaN NaN NaN 72.042 1 75.592 75.092 76.092 3.5505 0 0 0 0.40738 1 16842 16842 0.79363 0 1 + 58372 24303 36843 36862 67172 67172 -0.013324222253913831 YVFFFFFL 8 Unmodified _YVFFFFFL_ 0 0 0 L1MB7_dup19625|chr17:10130197-10131031:+|1.460441389201058|0.0063362676854045|7.85|151.0|49|2|anti-sense L1MB7_dup19625|chr17:10130197-10131031:+|1.460441389201058|0.0063362676854045|7.85|151.0|49|2|anti-sense L1MB7_dup19625|chr17:10130197-10131031:+|1.460441389201058|0.0063362676854045|7.85|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_3 7 565.7432861328125 2 565.291497 1128.56844 NaN NaN NaN NaN NaN NaN NaN 21.062 1 24.729 24.229 25.229 3.6667 0 0 0 0.40738 1 1913 1913 0.79363 0 1 58373 10774 36844 36863 67173 67173 0.009299219477270526 YVFFGKLF 8 Unmodified _YVFFGKLF_ 0 0 0 REV__L1PA6_dup3227|chr8:125196204-125202353:-|6.844946527729751|0.1627551044092786|5.39|151.0|282|2|anti-sense REV__L1PA6_dup3227|chr8:125196204-125202353:-|6.844946527729751|0.1627551044092786|5.39|151.0|282|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 510.78131103515625 2 510.781296 1019.54804 0.070742 3.6133E-05 -0.67293 -0.00034372 -0.60219 -0.00030759 510.7808807651788 49.209 0.70758 52.869 52.56 53.268 3.6592 75 49 2 0 0 0 0.82752 1 10744 10744 5.2307 0 1 131590 + 58374 29876 36845 36864 67174 67174 0.039047512878937596 YVFFLAFLI 9 Unmodified _YVFFLAFLI_ 0 0 0 REV__L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|177|2|anti-sense REV__L1MA5_dup3399|chr12:71859911-71863096:-|1.5280930811832931|0.0321205554929498|5.57|151.0|177|2|anti-sense MSMS UPN48_class_I_Rep_1 5 566.8286743164062 2 566.825704 1131.63685 NaN NaN NaN NaN NaN NaN NaN 19.998 1 23.536 23.036 24.036 3.5378 0 0 0 0.40038 1 1612 1612 0.6015 0 1 + 58375 25382 36846 36865 67175 67175 0.07630166527565052 YVFHLRLF 8 Unmodified _YVFHLRLF_ 0 0 0 REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|142|2|anti-sense REV__L1MA4A_dup5351|chr15:50959226-50962005:+|3.635271638532477|0.1024286093578279|5.15|151.0|142|2|anti-sense MSMS UPN48_class_I_Rep_1 5 547.8090209960938 2 547.810919 1093.60729 NaN NaN NaN NaN NaN NaN NaN 17.896 1 21.422 20.922 21.922 3.5261 0 0 0 0.40738 1 1115 1115 0.79363 0 1 + 58376 25318 36847 36866 67176 67176 0.06422647302065343 YVFILPCI 8 Unmodified _YVFILPCI_ 0 0 0 L1MC3_dup8332|chr10:87135800-87136767:-|1.9234904584274437|0.0249872470743101|6.27|151.0|60|3|anti-sense L1MC3_dup8332|chr10:87135800-87136767:-|1.9234904584274437|0.0249872470743101|6.27|151.0|60|3|anti-sense L1MC3_dup8332|chr10:87135800-87136767:-|1.9234904584274437|0.0249872470743101|6.27|151.0|60|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 484.269775390625 2 484.269707 966.524861 -0.62106 -0.00030076 -0.10606 -5.1362E-05 -0.72712 -0.00035212 484.2697064095342 21.978 0.89223 25.328 24.97 25.862 3.3496 107 82 2 0 0 0 0.82752 2 2476 2476;2479 2.8892 0 1 75953 58377 11381 36848 36867 67177;67178 67177 0.04025989178921918 YVFIMLIK 8 Unmodified _YVFIMLIK_ 0 0 0 REV__L1ME4a_dup621|chr1:44438755-44439432:-|7.8891068403176785|0.0018821160896105|12.03|151.0|31|3|sense REV__L1ME4a_dup621|chr1:44438755-44439432:-|7.8891068403176785|0.0018821160896105|12.03|151.0|31|3|sense MSMS UPN47_class_I_Rep_2 3 513.8057861328125 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 94.344 1 97.816 97.316 98.316 3.472 0 0 0 0.40625 1 23257 23257 2.3027 0 1 + 58378 28240 36849 36868 67179 67179 0.08658537621386131 YVFKNALRL 9 Unmodified _YVFKNALRL_ 0 0 0 nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN nc|ENSG00000102312|Q9H237-5|PORCN nc|ENSG00000102312|Q9H237-5|PORCN MULTI-MSMS UPN46_class_I_Rep_3 1 562.3343505859375 2 562.334759 1122.65496 0.25463 0.00014318 -0.04949 -2.783E-05 0.20514 0.00011536 562.3343969253037 33.192 0.03056 33.192 33.169 33.2 0 6 2 3 0 0 0 0.48414 1 5777 5777 2.3027 0 1 306030 58379 1609 36850 36869 67180 67180 0.09854301502264207 YVFLCLINY 9 Unmodified _YVFLCLINY_ 0 0 0 REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|197|3|anti-sense REV__L1M1_dup294|chr1:110902717-110906134:+|27.543244504937743|0.3055362004796851|6.49|151.0|197|3|anti-sense MSMS UPN47_class_I_Rep_3 4 574.2982177734375 2 574.296453 1146.57835 NaN NaN NaN NaN NaN NaN NaN 54.821 1 58.007 57.507 58.507 3.1856 0 0 0 0.28335 1 12479 12479 11.64 2.2929 1 + 58380 24068 36851 36870 67181 67181 0.010927418907840547 YVFLFVVV 8 Unmodified _YVFLFVVV_ 0 0 0 L1MCa_dup7052|chr19:19719066-19720341:+|1.8446682598012327|0.0584335906560119|4.98|151.0|84|3|anti-sense L1MCa_dup7052|chr19:19719066-19720341:+|1.8446682598012327|0.0584335906560119|4.98|151.0|84|3|anti-sense L1MCa_dup7052|chr19:19719066-19720341:+|1.8446682598012327|0.0584335906560119|4.98|151.0|84|3|anti-sense MSMS UPN48_class_I_Rep_3 7 493.2920227050781 2 493.291497 984.568441 NaN NaN NaN NaN NaN NaN NaN 38.854 1 42.51 42.01 43.01 3.6557 0 0 0 0.40738 1 6727 6727 0.79363 0 1 58381 11841 36852 36871 67182 67182 0.07553921947715025 YVFLIGNYL 9 Unmodified _YVFLIGNYL_ 0 0 0 REV__L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|23|3|sense REV__L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|23|3|sense MSMS UPN46_class_I_Rep_3 1 551.3012084960938 2 551.302593 1100.59063 NaN NaN NaN NaN NaN NaN NaN 71.711 1 71.711 71.211 72.211 0 0 0 0 0.35339 1 16536 16536 7.9102 3.5809 1 + 58382 26154 36853 36872 67183 67183 0.04436101625469746 YVFLIGNYL 9 Unmodified _YVFLIGNYL_ 0 0 0 REV__L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|23|3|sense REV__L1MB7_dup15851|chr12:64465265-64465945:+|1.838411317062085|0.0371837645738119|5.63|151.0|23|3|sense MSMS UPN47_class_I_Rep_2 3 551.3008422851562 2 551.302593 1100.59063 NaN NaN NaN NaN NaN NaN NaN 66.07 1 69.329 68.829 69.829 3.2588 0 0 0 0.35339 1 15850 15850 7.9102 1.187 1 + 58383 26154 36853 36872 67184 67184 0.04436101625469746 YVFMLKFH 8 Unmodified _YVFMLKFH_ 0 0 0 REV__L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|94|2|anti-sense REV__L1MB7_dup2555|chr2:96198338-96200076:-|1.2435756928285653|0.0318694094592143|5.29|151.0|94|2|anti-sense MSMS UPN48_class_I_Rep_2 6 542.7864990234375 2 542.786056 1083.55756 NaN NaN NaN NaN NaN NaN NaN 43.843 1 47.605 47.105 48.105 3.7617 0 0 0 0.40581 1 8288 8288 2.8892 0 1 + 58384 26236 36854 36873 67185 67185 0.019121963017823873 YVFNGPLEFL 10 Unmodified _YVFNGPLEFL_ 0 0 0 REV__L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|301|2|anti-sense REV__L1PA5_dup8960|chr12:89440654-89446709:+|3.495262651818573|0.2284568062706764|3.94|151.0|301|2|anti-sense MSMS UPN47_class_I_Rep_3 4 599.8108520507812 2 599.810782 1197.60701 NaN NaN NaN NaN NaN NaN NaN 71.961 1 75.18 74.68 75.68 3.2188 0 0 0 0.53105 1 17688 17688 3.2813 0.97858 1 + 58385 29810 36855 36874 67186 67186 0.016111827915892718 YVFPIWFF 8 Unmodified _YVFPIWFF_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-3|LMBRD1 MSMS UPN48_class_I_Rep_2 6 559.7898559570312 2 559.789121 1117.56369 NaN NaN NaN NaN NaN NaN NaN 64.328 1 67.802 67.302 68.302 3.4743 0 0 0 0.4032 1 14534 14534 6.3541 0 1 + 58386 20261 36856 36875 67187 67187 0.009610378049501378 YVFPLFLEF 9 Unmodified _YVFPLFLEF_ 0 0 0 REV__L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|188|3|anti-sense REV__L1MB8_dup6033|chr7:2948254-2951322:-|1.0463514835517005|0.0286347754978208|5.19|151.0|188|3|anti-sense MSMS UPN48_class_I_Rep_2 6 587.811279296875 2 587.812793 1173.61103 NaN NaN NaN NaN NaN NaN NaN 72.659 1 76.224 75.724 76.724 3.5645 0 0 0 0.26661 1 17019 17019 12.532 0.29089 1 + 58387 26427 36857 36876 67188 67188 0.031172722852716106 YVFPTCQH 8 Unmodified _YVFPTCQH_ 0 0 0 REV__LTR33_dup2384|chr4:89800947-89801393:+|1.3567133943632763|0.0253659614565045|5.74|149.0|1|1|sense REV__LTR33_dup2384|chr4:89800947-89801393:+|1.3567133943632763|0.0253659614565045|5.74|149.0|1|1|sense MSMS UPN48_class_I_Rep_3 7 497.7275390625 2 497.726195 993.437837 NaN NaN NaN NaN NaN NaN NaN 22.749 1 26.5 26 27 3.7507 0 0 0 0.4032 1 2372 2372 6.3541 0.59368 1 + 58388 30900 36858 36877 67189 67189 -0.05914417042799869 YVFPWCTY 8 Unmodified _YVFPWCTY_ 0 0 0 REV__L1M2_dup4960|chr9:90884996-90886422:+|5.908336750686133|0.3008089654769183|4.3|151.0|48|1|anti-sense REV__L1M2_dup4960|chr9:90884996-90886422:+|5.908336750686133|0.3008089654769183|4.3|151.0|48|1|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 539.7376708984375 2 539.738771 1077.46299 0.14422 7.784E-05 -1.0593 -0.00057176 -0.91511 -0.00049392 539.7380352040706 31.963 0.17145 31.963 31.898 32.069 0 17 11 2 0 0 0 0.82752 1 5412 5412 9.3474 0 1 73164 + 58389 24218 36859 36878 67190 67190 -0.0726436224022109 YVFRHLFI 8 Unmodified _YVFRHLFI_ 0 0 0 REV__L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|90|2|anti-sense REV__L1MC3_dup286|chr1:89887995-89889587:+|1.5284715032437488|0.0221265574145671|6.11|151.0|90|2|anti-sense MSMS UPN47_class_I_Rep_3 4 547.8104248046875 2 547.810919 1093.60729 NaN NaN NaN NaN NaN NaN NaN 17.214 1 20.572 20.072 21.072 3.3581 0 0 0 0.40746 1 1221 1221 0.69038 0 1 + 58390 26732 36860 36879 67191 67191 0.06422647302065343 YVFSCCWRC 9 Unmodified _YVFSCCWRC_ 0 0 0 L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|87|1|anti-sense L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|87|1|anti-sense L1MC4a_dup464|chr1:180375625-180377514:+|1.2796100739160567|0.0209139142645749|5.94|151.0|87|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_3 4 584.269287109375 2 583.73264 1165.45073 0.44964 0.00026247 0.015748 9.1927E-06 0.46539 0.00027166 583.7327268649666 70.877 0.15643 74.089 74.005 74.162 3.2113 18 13 2 0 0 0 0.12422 1 17366 17366 2.3027 0 1 57276 58391 11588 36861 36880 67192 67192 -0.12538045246560614 YVFTNIITN 9 Unmodified _YVFTNIITN_ 0 0 0 REV__L1ME4c_dup6139|chr11:117166397-117166567:+|1.4743736492144723|0.1973986321983586|2.9|150.0|11|1|anti-sense REV__L1ME4c_dup6139|chr11:117166397-117166567:+|1.4743736492144723|0.1973986321983586|2.9|150.0|11|1|anti-sense MSMS UPN48_class_I_Rep_3 7 542.7907104492188 2 542.787307 1083.56006 NaN NaN NaN NaN NaN NaN NaN 43.787 1 47.426 46.926 47.926 3.6385 0 0 0 0.38299 1 8191 8191 4.756 0 1 + 58392 28318 36862 36881 67193 67193 0.02162323240418118 YVFVFENVF 9 Unmodified _YVFVFENVF_ 0 0 0 Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense MSMS UPN47_class_I_Rep_3 4 582.2926635742188 2 582.292225 1162.5699 NaN NaN NaN NaN NaN NaN NaN 69.143 1 72.347 71.847 72.847 3.2044 0 0 0 0.39326 1 16843 16843 2.3027 0 1 58393 547 36863 36882 67194 67194 -0.004884887541948046 YVFVFENVF 9 Unmodified _YVFVFENVF_ 0 0 0 Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense MSMS UPN48_class_I_Rep_1 5 582.2908325195312 2 582.292225 1162.5699 NaN NaN NaN NaN NaN NaN NaN 77.345 1 80.867 80.367 81.367 3.5221 0 0 0 0.37891 1 18402 18402 5.7319 0.50118 1 58394 547 36863 36882 67195 67195 -0.004884887541948046 YVFVFENVF 9 Unmodified _YVFVFENVF_ 0 0 0 Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.293701171875 2 582.292225 1162.5699 0.47473 0.00027643 -0.17643 -0.00010273 0.2983 0.0001737 582.2920081131813 77.183 0.62675 80.795 80.511 81.137 3.6116 106 60 2 0 0 0 0.26948 5 18332 18220;18293;18312;18332;18353 15.847 3.3156 1 170300 58395 547 36863 36882 67196;67197;67198;67199;67200 67199 -0.004884887541948046 YVFVFENVF 9 Unmodified _YVFVFENVF_ 0 0 0 Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense Cheshire_dup143|chr2:171123835-171125725:-|1.1133633554309037|0.0142716633820423|6.29|151.0|67|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.2925415039062 2 582.292225 1162.5699 0.53499 0.00031152 0.0071596 4.169E-06 0.54215 0.00031569 582.2921042835295 77.133 0.68399 80.734 80.507 81.191 3.6016 98 56 2 0 0 0 0.30034 4 18231 18190;18195;18231;18267 13.906 3.0821 1 166160 58396 547 36863 36882 67201;67202;67203;67204 67203 -0.004884887541948046 YVFVHKFI 8 Unmodified _YVFVHKFI_ 0 0 0 L1MEc_dup9255|chr8:73721316-73722730:-|2.079938221409424|0.0175473333822004|6.89|151.0|18|1|sense L1MEc_dup9255|chr8:73721316-73722730:-|2.079938221409424|0.0175473333822004|6.89|151.0|18|1|sense L1MEc_dup9255|chr8:73721316-73722730:-|2.079938221409424|0.0175473333822004|6.89|151.0|18|1|sense MSMS UPN46_class_I_Rep_3 1 526.8218383789062 2 526.80002 1051.58549 NaN NaN NaN NaN NaN NaN NaN 32.823 1 32.823 32.323 33.323 0 0 0 0 0.40738 1 5665 5665 0.79363 0 1 58397 13154 36864 36883 67205 67205 0.06175842553511757 YVFVYRLV 8 Unmodified _YVFVYRLV_ 0 0 0 REV__L1MA3_dup6679|chr12:9017295-9018595:+|2.1094489299292944|0.0837291027932214|4.65|151.0|85|3|anti-sense REV__L1MA3_dup6679|chr12:9017295-9018595:+|2.1094489299292944|0.0837291027932214|4.65|151.0|85|3|anti-sense MSMS UPN48_class_I_Rep_3 7 529.8037719726562 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 34.062 1 37.742 37.242 38.242 3.6797 0 0 0 0.40738 1 5369 5369 0.79363 0 1 + 58398 25089 36865 36884 67206 67206 0.0695582520793323 YVFYWRDY 8 Unmodified _YVFYWRDY_ 0 0 0 ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L MULTI-MSMS UPN46_class_I_Rep_3 1 404.5218200683594 3 404.522192 1210.54475 -0.20367 -8.239E-05 -0.099878 -4.0403E-05 -0.30355 -0.00012279 404.5221218596115 29.702 0.66166 29.702 29.413 30.075 0 101 57 3 0 0 0 0.82752 1 4682 4682 1.8442 0.19162 1 166250 58399 2035 36866 36885 67207 67207 -0.052105435567682434 YVGAYIALYN 10 Unmodified _YVGAYIALYN_ 0 0 0 REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|61|1|anti-sense REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|61|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 573.7952880859375 2 573.795132 1145.57571 0.30413 0.00017451 0.12071 6.9263E-05 0.42484 0.00024377 573.7950439364812 53.871 1.1017 57.399 57.036 58.137 3.5278 147 58 4 0 0 0 0.51003 1 12270 12270 10.824 0 1 402880 + 58400 25985 36867 36886 67208 67208 0.008746097574885425 YVGAYIALYN 10 Unmodified _YVGAYIALYN_ 0 0 0 REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|61|1|anti-sense REV__L1MB4_dup5550|chr10:63451753-63453003:+|1.3381523171947332|0.0254865563336532|5.71|151.0|61|1|anti-sense MSMS UPN47_class_I_Rep_1 2 573.79443359375 2 573.795132 1145.57571 NaN NaN NaN NaN NaN NaN NaN 54.613 1 58.114 57.614 58.614 3.5014 0 0 0 0.53105 1 12332 12332 6.7232 0.51738 1 + 58401 25985 36867 36886 67209 67209 0.008746097574885425 YVGFVIAER 9 Unmodified _YVGFVIAER_ 0 0 0 ENSG00000179104|ENST00000321196|TMTC2;ENST00000551915.5_1_12:83081308-83379891:+|nuORF ENSG00000179104|ENST00000321196|TMTC2 ENSG00000179104|ENST00000321196|TMTC2 MULTI-MSMS UPN48_class_I_Rep_3 7 528.2899169921875 2 527.290017 1052.56548 0.33797 0.00017821 -1.483 -0.00078196 -1.145 -0.00060376 527.2899036046406 55.063 0.84992 58.632 58.226 59.076 3.5694 134 47 4 0 0 0 0.30034 1 11589 11589 13.906 0 1 660560 58402 4848 36868 36887 67210 67210 0.04130046822865552 YVGHFNFLFYF 11 Unmodified _YVGHFNFLFYF_ 0 0 0 REV__ENST00000227756.4_1_11:11292512-11292662:-|nuORF REV__ENST00000227756.4_1_11:11292512-11292662:-|nuORF MSMS UPN47_class_I_Rep_1 2 485.2366943359375 3 485.236163 1452.68666 NaN NaN NaN NaN NaN NaN NaN 32.429 1 36.142 35.642 36.642 3.7131 0 0 0 0.37352 1 5581 5581 7.4771 0 1 + 58403 21490 36869 36888 67211 67211 -0.021577505344566816 YVGHFVIY 8 Unmodified _YVGHFVIY_ 0 0 0 REV__L1PA15_dup7239|chr14:77560632-77561038:+|1.069727314068954|0.0149352611207439|6.16|151.0|23|2|anti-sense REV__L1PA15_dup7239|chr14:77560632-77561038:+|1.069727314068954|0.0149352611207439|6.16|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_3 4 499.2605895996094 2 499.260728 996.506903 NaN NaN NaN NaN NaN NaN NaN 27.752 1 31.095 30.595 31.595 3.3422 0 0 0 0.40581 1 4259 4259 2.8892 0 1 + 58404 29162 36870 36889 67212 67212 0.00850990248409289 YVGHIFWHF 9 Unmodified _YVGHIFWHF_ 0 0 0 L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 603.8014526367188 2 603.298176 1204.5818 0.58671 0.00035396 1.2723 0.00076758 1.859 0.0011215 603.2990228262194 60.617 0.25702 64.09 63.949 64.206 3.4737 20 17 2 0 0 0 0.37662 1 13452 13452 9.3474 1.4373 1 136930 58405 10632 36871 36890 67213 67213 -0.012308272203654269 YVGHIFWHF 9 Unmodified _YVGHIFWHF_ 0 0 0 L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 603.2537841796875 2 603.298176 1204.5818 0.55819 0.00033675 1.6217 0.00097835 2.1799 0.0013151 603.2991310670432 60.305 0.34244 63.784 63.636 63.979 3.4785 34 28 2 0 0 0 0.11775 1 13328 13328 9.3474 0 1 96092 58406 10632 36871 36890 67214 67214 -0.012308272203654269 YVGHIFWHF 9 Unmodified _YVGHIFWHF_ 0 0 0 L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense L1MB5_dup5947|chr11:58598789-58601924:-|1.5692578174571907|0.08110558886312|4.27|151.0|226|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 603.298176 1204.5818 0.5548 0.00033471 2.2308 0.0013458 2.7856 0.0016806 603.3003134046658 60.637 0.049149 64.116 64.084 64.133 3.4785 0.012817 0.0011133 NaN 9.3474 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 100590 58407 10632 36871 36890 -0.012308272203654269 YVGKLRSNL 9 Unmodified _YVGKLRSNL_ 0 0 0 ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-2|TULP3 ENSG00000078246|ENST00000448120|TULP3 ENSG00000078246|ENST00000448120|TULP3 MSMS UPN48_class_I_Rep_1 5 525.3072509765625 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 59.457 1 62.938 62.438 63.438 3.4801 0 0 0 0.29868 1 13066 13066 10.824 2.2306 1 58408 1182 36872 36891 67215 67215 0.08057138088520333 YVGLKIFR 8 Unmodified _YVGLKIFR_ 0 0 0 REV__L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|47|2|anti-sense REV__L1MC5_dup10097|chr11:66127848-66128584:+|1.4197124566446435|0.0199684811631507|6.15|151.0|47|2|anti-sense MSMS UPN48_class_I_Rep_2 6 498.2883605957031 2 498.30547 994.596387 NaN NaN NaN NaN NaN NaN NaN 43.48 1 47.241 46.741 47.741 3.7617 0 0 0 0.40738 1 8175 8175 0.79363 0 1 + 58409 27048 36873 36892 67216 67216 0.0988724492780193 YVGRKFLG 8 Unmodified _YVGRKFLG_ 0 0 0 MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|15|2|anti-sense MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|15|2|anti-sense MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|15|2|anti-sense MSMS UPN48_class_I_Rep_2 6 470.27520751953125 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 53.815 1 57.396 56.896 57.896 3.5817 0 0 0 0.40581 1 11315 11315 2.8892 0 1 58410 16133 36874 36893 67217 67217 0.062060988596158495 YVGRKFLG 8 Unmodified _YVGRKFLG_ 0 0 0 MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|15|2|anti-sense MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|15|2|anti-sense MER57E3_dup97|chr19:11929484-11929740:-|2.8774563659017063|0.1264401153014027|4.51|151.0|15|2|anti-sense MSMS UPN48_class_I_Rep_2 6 470.2749938964844 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 53.953 1 57.535 57.035 58.035 3.5817 0 0 0 0.4032 1 11357 11357 6.3541 0 1 58411 16133 36874 36893 67218 67218 0.062060988596158495 YVHAYLHF 8 Unmodified _YVHAYLHF_ 0 0 0 L1M3_dup2173|chr6:20424446-20424652:-|1.0893746535912394|0.0192052477372142|5.83|151.0|13|2|anti-sense L1M3_dup2173|chr6:20424446-20424652:-|1.0893746535912394|0.0192052477372142|5.83|151.0|13|2|anti-sense L1M3_dup2173|chr6:20424446-20424652:-|1.0893746535912394|0.0192052477372142|5.83|151.0|13|2|anti-sense MSMS UPN48_class_I_Rep_2 6 525.2467651367188 2 525.263802 1048.51305 NaN NaN NaN NaN NaN NaN NaN 33.579 1 37.24 36.74 37.74 3.6607 0 0 0 0.4032 1 5317 5317 6.3541 0.59368 1 58412 8754 36875 36894 67219 67219 -0.009264915200901669 YVHDDGRVSY 10 Unmodified _YVHDDGRVSY_ 0 0 0 ENST00000601731.1_1_19:39819119-39826633:-|nuORF;GMFG|p.N109Kfs*19|1|0.08|ENSG00000130755|chr19:39329030-39329031|-/T|frameshift_variant;ENSG00000130755|ENST00000597595|GMFG ENST00000601731.1_1_19:39819119-39826633:-|nuORF ENST00000601731.1_1_19:39819119-39826633:-|nuORF MSMS UPN46_class_I_Rep_3 1 605.7780151367188 2 605.778002 1209.54145 NaN NaN NaN NaN NaN NaN NaN 29.748 1 29.748 29.248 30.248 0 0 0 0 0.53105 1 4754 4754 2.4985 0.65425 1 58413 2677 36876 36895 67220 67220 -0.054938384014121766 YVHIYELI 8 Unmodified _YVHIYELI_ 0 0 0 REV__Tigger4b_dup2142|chr16:18811088-18811420:-|1.4140934931500997|0.347309505337445|2.03|150.0|13|1|anti-sense REV__Tigger4b_dup2142|chr16:18811088-18811420:-|1.4140934931500997|0.347309505337445|2.03|150.0|13|1|anti-sense MSMS UPN48_class_I_Rep_1 5 525.7490234375 2 525.286943 1048.55933 NaN NaN NaN NaN NaN NaN NaN 33.647 1 37.167 36.667 37.667 3.5201 0 0 0 0.40581 1 5277 5277 2.8892 0 1 + 58414 32796 36877 36896 67221 67221 0.03699528591369017 YVHLKILF 8 Unmodified _YVHLKILF_ 0 0 0 REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|16|2|sense REV__L1ME2z_dup5657|chr15:100967645-100968675:-|1.299481011766876|0.009130372025687|7.15|150.0|16|2|sense MSMS UPN47_class_I_Rep_1 2 516.8067016601562 2 516.81567 1031.61679 NaN NaN NaN NaN NaN NaN NaN 87.262 1 90.9 90.4 91.4 3.6372 0 0 0 0.40746 1 21801 21801 0.69038 0 1 + 58415 27930 36878 36897 67222 67222 0.10224415587595104 YVHLLALL 8 Unmodified _YVHLLALL_ 0 0 0 REV__ENSG00000150637|ENST00000582621|CD226 REV__ENSG00000150637|ENST00000582621|CD226 MSMS UPN48_class_I_Rep_2 6 471.29443359375 2 471.294571 940.574589 NaN NaN NaN NaN NaN NaN NaN 46.869 1 50.618 50.118 51.118 3.7494 0 0 0 0.40738 1 9208 9208 0.79363 0 1 + 58416 19637 36879 36898 67223 67223 0.1019244017921892 YVHLLIFR 8 Unmodified _YVHLLIFR_ 0 0 0 REV__L1MB8_dup3979|chr4:102654584-102655970:+|2.038846360791894|0.1076096623925694|4.24|151.0|70|2|anti-sense REV__L1MB8_dup3979|chr4:102654584-102655970:+|2.038846360791894|0.1076096623925694|4.24|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.8208618164062 2 530.818744 1059.62294 NaN NaN NaN NaN NaN NaN NaN 76.385 1 79.986 79.486 80.486 3.6011 0 0 0 0.40738 1 18031 18031 0.79363 0 1 + 58417 26416 36880 36899 67224 67224 0.09550933819127749 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(64)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_2 6 525.2477416992188 2 525.247295 1048.48004 0.38267 0.00020099 -0.39304 -0.00020644 -0.010374 -5.4491E-06 525.2469464736283 33.803 0.49763 37.464 37.242 37.74 3.6607 75 54 2 0 0 0 0.82752 1 5383 5383 63.563 37.222 1 85400 58418 3149 36881 36900 67225 67225 99 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(54)VTHF 0 0 1 nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 nc|ENSG00000139644|P55061-2|TMBIM6 MULTI-MSMS UPN48_class_I_Rep_3 7 525.2476806640625 2 525.247295 1048.48004 0.34325 0.00018029 -0.53381 -0.00028038 -0.19056 -0.00010009 525.2470317870419 33.54 0.41198 37.219 36.893 37.305 3.6797 54 43 2 0 0 0 0.82752 1 5204 5204 53.576 29.366 1 94155 58419 3149 36881 36900 67226 67226 99 -0.04226441634409639 YVHPIVQQH 9 Unmodified _YVHPIVQQH_ 0 0 0 REV__nc|ENSG00000049323|Q14766-3|LTBP1 REV__nc|ENSG00000049323|Q14766-3|LTBP1 MULTI-MSMS UPN47_class_I_Rep_3 4 560.7982788085938 2 560.79854 1119.58253 -0.44236 -0.00024807 -0.77049 -0.00043209 -1.2128 -0.00068016 560.7983886798952 12.276 0.25045 15.651 15.557 15.808 3.3753 68 33 3 0 0 0 0.48846 1 48 48 1.8442 0 1 59239 + 58420 17675 36882 36901 67227 67227 0.027519674287077578 YVHPIVQQH 9 Unmodified _YVHPIVQQH_ 0 0 0 REV__nc|ENSG00000049323|Q14766-3|LTBP1 REV__nc|ENSG00000049323|Q14766-3|LTBP1 MULTI-MATCH-MSMS UPN47_class_I_Rep_2 3 2 560.79854 1119.58253 0.048573 2.7239E-05 -1.2353 -0.00069277 -1.1868 -0.00066554 560.7979703006964 12.623 0.24672 16.011 15.908 16.155 3.3885 0.11416 -0.00017395 NaN 1.8442 61 30 3 NaN NaN NaN NaN 0 NaN NaN 0 82721 + 58421 17675 36882 36901 0.027519674287077578 YVHPPHLY 8 Unmodified _YVHPPHLY_ 0 0 0 REV__L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|20|2|sense REV__L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|20|2|sense MULTI-SECPEP UPN47_class_I_Rep_1 2 512.7750244140625 2 513.263802 1024.51305 -0.16623 -8.5322E-05 -0.070572 -3.6222E-05 -0.23681 -0.00012154 513.2636274848625 37.741 0.29275 41.406 41.152 41.445 3.6652 31 20 2 0 0 0 0.72333 1 7127 7127 6.3541 0 1 42720 + 58422 25268 36883 36902 67228 67228 0.0017750847994193464 YVHPPHLY 8 Unmodified _YVHPPHLY_ 0 0 0 REV__L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|20|2|sense REV__L1MA4A_dup3288|chr9:85606084-85607195:+|1.8151292579475|0.0168765622537452|6.75|151.0|20|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 513.263427734375 2 513.263802 1024.51305 -0.23055 -0.00011833 -0.086861 -4.4583E-05 -0.31741 -0.00016292 513.263723765038 38.248 0.27617 41.489 41.394 41.67 3.2414 19 17 2 0 0 0 0.82752 1 7434 7434 6.3541 0 1 49749 + 58423 25268 36883 36902 67229 67229 0.0017750847994193464 YVHTLFPHS 9 Unmodified _YVHTLFPHS_ 0 0 0 L1MC4_dup3919|chr2:233112088-233112677:-|2.0844944898859468|0.0138849458921245|7.23|151.0|7|2|sense L1MC4_dup3919|chr2:233112088-233112677:-|2.0844944898859468|0.0138849458921245|7.23|151.0|7|2|sense L1MC4_dup3919|chr2:233112088-233112677:-|2.0844944898859468|0.0138849458921245|7.23|151.0|7|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.7788696289062 2 550.779816 1099.54508 0.28896 0.00015915 0.24724 0.00013617 0.5362 0.00029533 550.7798821935859 51.232 0.56754 54.842 54.628 55.195 3.6105 63 43 2 0 0 0 0.32219 1 10466 10466 12.532 2.4576 1 173900 58424 11494 36884 36903 67230 67230 -0.0007112383691492141 YVHVHLQR 8 Unmodified _YVHVHLQR_ 0 0 0 REV__Charlie1a_dup5609|chr20:62916423-62917041:-|2.011922984080885|0.3158855980828269|2.67|151.0|43|3|anti-sense REV__Charlie1a_dup5609|chr20:62916423-62917041:-|2.011922984080885|0.3158855980828269|2.67|151.0|43|3|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 525.7905883789062 2 526.293425 1050.5723 0.4319 0.00022731 1.1667 0.00061401 1.5986 0.00084132 526.7970199101491 27.059 0.036787 30.69 30.658 30.695 3.6311 5 3 2 0 0 0 0.72333 1 3533 3533 0.79363 0 1 31251 + 58425 17344 36885 36904 67231 67231 0.049034044941208776 YVHVHLQR 8 Unmodified _YVHVHLQR_ 0 0 0 REV__Charlie1a_dup5609|chr20:62916423-62917041:-|2.011922984080885|0.3158855980828269|2.67|151.0|43|3|anti-sense REV__Charlie1a_dup5609|chr20:62916423-62917041:-|2.011922984080885|0.3158855980828269|2.67|151.0|43|3|anti-sense MULTI-MATCH UPN48_class_I_Rep_3 7 2 526.293425 1050.5723 0.34467 0.0001814 1.1364 0.00059807 1.4811 0.00077947 526.2927275199976 26.914 0.039791 30.67 30.647 30.687 3.7555 -0.010055 -1.6533E-05 NaN 0.79363 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 22294 + 58426 17344 36885 36904 0.049034044941208776 YVHVPLKDLK 10 Unmodified _YVHVPLKDLK_ 0 0 0 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 REV__nc|ENSG00000088387|Q9BZ29-5|DOCK9 MULTI-MSMS UPN46_class_I_Rep_3 1 606.36083984375 2 606.360973 1210.70739 0.33697 0.00020432 0.013367 8.1052E-06 0.35033 0.00021243 606.360899066061 29.728 0.25598 29.728 29.521 29.777 0 25 20 2 0 0 0 0.56333 1 4705 4705 1.4819 0.79152 1 205160 + 58427 17989 36886 36905 67232 67232 0.11046839845221257 YVHVRINM 8 Unmodified _YVHVRINM_ 0 0 0 REV__L1PA16_dup6487|chr7:149268405-149269672:-|1.1922623502547804|0.1222358498287068|3.29|151.0|53|1|anti-sense REV__L1PA16_dup6487|chr7:149268405-149269672:-|1.1922623502547804|0.1222358498287068|3.29|151.0|53|1|anti-sense MSMS UPN46_class_I_Rep_3 1 516.361328125 2 516.276386 1030.53822 NaN NaN NaN NaN NaN NaN NaN 73.316 1 73.316 72.816 73.816 0 0 0 0 0.40738 1 16990 16990 0.79363 0 1 + 58428 29401 36887 36906 67233 67233 0.024172400108682268 YVHVWYQLM 9 Unmodified _YVHVWYQLM_ 0 0 0 REV__L1PA15_dup212|chr1:110909880-110910316:+|1.979924731700724|0.0074501619204438|8.05|151.0|23|2|anti-sense REV__L1PA15_dup212|chr1:110909880-110910316:+|1.979924731700724|0.0074501619204438|8.05|151.0|23|2|anti-sense MSMS UPN47_class_I_Rep_1 2 619.8058471679688 2 619.804977 1237.5954 NaN NaN NaN NaN NaN NaN NaN 56.759 1 60.216 59.716 60.716 3.4572 0 0 0 0.40038 1 12987 12987 0.6015 0.076735 1 + 58429 29200 36888 36907 67234 67234 -0.013893375034285782 YVHYGLTQ 8 Unmodified _YVHYGLTQ_ 0 0 0 REV__ENSG00000078618|ENST00000352171|NRDC REV__ENSG00000078618|ENST00000352171|NRDC MSMS UPN47_class_I_Rep_2 3 490.7446594238281 2 490.745442 979.476331 NaN NaN NaN NaN NaN NaN NaN 36.795 1 40.194 39.694 40.694 3.3988 0 0 0 0.40581 1 6943 6943 2.8892 0.31174 1 + 58430 17888 36889 36908 67235 67235 -0.014227881366309703 YVICMKQP 8 Unmodified _YVICMKQP_ 0 0 0 REV__Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|46|3|anti-sense REV__Charlie24_dup932|chr10:87935101-87935724:-|4.8582168284355705|0.3800995493226218|3.68|151.0|46|3|anti-sense MSMS UPN46_class_I_Rep_3 1 491.23223876953125 2 491.248449 980.482345 NaN NaN NaN NaN NaN NaN NaN 19.504 1 19.504 19.004 20.004 0 0 0 0 0.40738 1 1868 1868 0.79363 0 1 + 58431 17364 36890 36909 67236 67236 -0.008677292209654297 YVIDSPLEPV 10 Unmodified _YVIDSPLEPV_ 0 0 0 REV__L1PBa_dup1961|chr17:47355870-47357177:-|1.1106930760420506|0.090798038891631|3.61|151.0|24|2|sense REV__L1PBa_dup1961|chr17:47355870-47357177:-|1.1106930760420506|0.090798038891631|3.61|151.0|24|2|sense MSMS UPN46_class_I_Rep_3 1 566.3023071289062 2 566.300247 1130.58594 NaN NaN NaN NaN NaN NaN NaN 38.831 1 38.831 38.331 39.331 0 0 0 0 0.53105 1 7423 7423 3.9444 1.3669 1 + 58432 30642 36891 36910 67237 67237 0.025871726920286164 YVIFVVGSVYV 11 Unmodified _YVIFVVGSVYV_ 0 0 0 L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|140|1|anti-sense L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|140|1|anti-sense L1PA6_dup5506|chr18:13078637-13082432:-|2.980808748242873|0.066199514873569|5.49|151.0|140|1|anti-sense MSMS UPN48_class_I_Rep_3 7 622.8494873046875 2 622.849907 1243.68526 NaN NaN NaN NaN NaN NaN NaN 106.7 1 110.39 109.89 110.89 3.6899 0 0 0 0.38417 1 25155 25155 2.9952 1.151 1 58433 14668 36892 36911 67238 67238 0.07316615376794289 YVIIHDAF 8 Unmodified _YVIIHDAF_ 0 0 0 REV__L1PA4_dup7087|chrX:57157850-57163886:-|2.1401743905815205|0.1085499484887162|4.3|151.0|122|2|sense REV__L1PA4_dup7087|chrX:57157850-57163886:-|2.1401743905815205|0.1085499484887162|4.3|151.0|122|2|sense MSMS UPN48_class_I_Rep_3 7 489.25628662109375 2 489.258185 976.501818 NaN NaN NaN NaN NaN NaN NaN 78.498 1 82.12 81.62 82.62 3.6216 0 0 0 0.40604 1 18583 18583 2.5775 0 1 + 58434 29669 36893 36912 67239 67239 0.01262686385791767 YVIIILIPILG 11 Unmodified _YVIIILIPILG_ 0 0 0 REV__L1M4_dup15902|chr14:31000001-31000606:+|1.2259230990516223|0.0048789975584422|7.97|150.0|28|1|anti-sense REV__L1M4_dup15902|chr14:31000001-31000606:+|1.2259230990516223|0.0048789975584422|7.97|150.0|28|1|anti-sense MSMS UPN46_class_I_Rep_3 1 613.6263427734375 2 613.909768 1225.80498 NaN NaN NaN NaN NaN NaN NaN 46.304 1 46.304 45.804 46.804 0 0 0 0 0.38417 1 9484 9484 1.4819 0 1 + 58435 24383 36894 36913 67240 67240 0.20111228721384578 YVILHSHQ 8 Unmodified _YVILHSHQ_ 0 0 0 L1MB2_dup3713|chr7:129723851-129724829:+|2.090987168110735|0.4460895202586485|2.23|151.0|57|3|anti-sense L1MB2_dup3713|chr7:129723851-129724829:+|2.090987168110735|0.4460895202586485|2.23|151.0|57|3|anti-sense L1MB2_dup3713|chr7:129723851-129724829:+|2.090987168110735|0.4460895202586485|2.23|151.0|57|3|anti-sense MSMS UPN48_class_I_Rep_1 5 498.4248962402344 2 498.766709 995.518865 NaN NaN NaN NaN NaN NaN NaN 24.446 1 28.011 27.511 28.511 3.5655 0 0 0 0.40738 1 2700 2700 0.79363 0 1 58436 10238 36895 36914 67241 67241 0.020926069916072265 YVILIYLQTI 10 Unmodified _YVILIYLQTI_ 0 0 0 nc|ENSG00000024526|Q5TB30-2|DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1 nc|ENSG00000024526|Q5TB30-2|DEPDC1 nc|ENSG00000024526|Q5TB30-2|DEPDC1 MULTI-MSMS UPN47_class_I_Rep_2 3 620.3739624023438 2 619.873382 1237.73221 0.62337 0.00038641 -0.70923 -0.00043963 -0.085862 -5.3224E-05 620.3740936684126 93.039 0.030746 96.508 96.497 96.528 3.4687 5 3 2 0 0 0 0.56478 1 22978 22978 0.45834 0 1 31370 58437 820 36896 36915 67242 67242 0.12285474927944051 YVILTIYKYYV 11 Unmodified _YVILTIYKYYV_ 0 0 0 HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|25|2|anti-sense HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|25|2|anti-sense HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|25|2|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 479.93914794921875 3 479.939123 1436.79554 -0.33883 -0.00016262 0.14354 6.8891E-05 -0.19529 -9.3728E-05 479.9392101421685 12.685 0.52289 12.685 12.58 13.103 0 98 45 3 0 0 0 0.68132 1 165 165 0.40827 0 1 137140 58438 7794 36897 36916 67243 67243 0.09461415645182569 YVILTIYKYYV 11 Unmodified _YVILTIYKYYV_ 0 0 0 HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|25|2|anti-sense HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|25|2|anti-sense HAL1_dup12471|chr9:33856268-33856705:-|1.981242380424017|0.0046528999709802|8.73|151.0|25|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 479.9390869140625 3 479.939123 1436.79554 0.34334 0.00016478 -0.55178 -0.00026482 -0.20843 -0.00010004 479.9389144080194 12.808 0.33392 16.462 16.271 16.605 3.6549 67 45 2 0 0 0 0.6724 1 124 124 1.2148 1.2148 1 63453 58439 7794 36897 36916 67244 67244 0.09461415645182569 YVISSLSNDC 10 Unmodified _YVISSLSNDC_ 0 0 0 REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense MSMS UPN46_class_I_Rep_3 1 550.7484130859375 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 93.481 1 93.481 92.981 93.981 0 0 0 0 0.53105 1 22656 22656 1.3295 0.5359 1 + 58440 27999 36898 36917 67245 67245 -0.060188076332678975 YVISSLSNDC 10 Unmodified _YVISSLSNDC_ 0 0 0 REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense MSMS UPN47_class_I_Rep_2 3 550.7482299804688 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 114.47 1 117.98 117.48 118.48 3.5109 0 0 0 0.53105 1 27876 27876 1.1933 0.39971 1 + 58441 27999 36898 36917 67246 67246 -0.060188076332678975 YVISSLSNDC 10 Unmodified _YVISSLSNDC_ 0 0 0 REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense MSMS UPN47_class_I_Rep_3 4 550.7500610351562 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 25.405 1 28.756 28.256 29.256 3.3509 0 0 0 0.53105 1 3567 3567 3.2813 0.70383 1 + 58442 27999 36898 36917 67247 67247 -0.060188076332678975 YVISSLSNDC 10 Unmodified _YVISSLSNDC_ 0 0 0 REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense REV__L1ME3A_dup13136|chr16:19685073-19685808:-|1.5403744149067495|0.4018286841451127|1.94|151.0|6|1|sense MSMS UPN48_class_I_Rep_1 5 550.7489013671875 2 550.750064 1099.48558 NaN NaN NaN NaN NaN NaN NaN 27.069 1 30.631 30.131 31.131 3.5629 0 0 0 0.53105 1 3427 3427 1.3295 0.5359 1 + 58443 27999 36898 36917 67248 67248 -0.060188076332678975 YVISSVYRL 9 Unmodified _YVISSVYRL_ 0 0 0 REV__L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|334|3|anti-sense REV__L1PA8_dup6179|chr12:62337462-62343846:-|17.29469121272822|0.2860234271753916|5.92|151.0|334|3|anti-sense MSMS UPN47_class_I_Rep_2 3 550.3109130859375 2 550.310949 1098.60735 NaN NaN NaN NaN NaN NaN NaN 67.925 1 71.195 70.695 71.695 3.2696 0 0 0 0.38639 1 16407 16407 3.9444 0 1 + 58444 30246 36899 36918 67249 67249 0.06198602511403806 YVISVTHTY 9 Unmodified _YVISVTHTY_ 0 0 0 MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|16|2|sense MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|16|2|sense MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.7785034179688 2 541.779482 1081.54441 0.49256 0.00026686 -0.16009 -8.6733E-05 0.33247 0.00018012 541.7792919834975 67.773 0.42372 71.27 71.076 71.5 3.4964 47 35 2 0 0 0 0.20276 2 15609 15569;15609 20.454 5.2051 1 117870 58445 15791 36900 36919 67250;67251 67251 0.0069003672338112665 YVISVTHTY 9 Unmodified _YVISVTHTY_ 0 0 0 MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|16|2|sense MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|16|2|sense MER11C_dup127|chr3:47505960-47506927:-|1.0049845523182983|0.1212000301681262|3.05|151.0|16|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.7802734375 2 541.779482 1081.54441 0.58171 0.00031516 -0.17132 -9.2818E-05 0.41039 0.00022234 541.7794028334763 67.725 0.52563 71.233 70.994 71.519 3.5077 54 47 2 0 0 0 0.09884 3 15467 15467;15506;15552 34.102 7.8343 1 91209 58446 15791 36900 36919 67252;67253;67254 67252 0.0069003672338112665 YVITFHISSG 10 Unmodified _YVITFHISSG_ 0 0 0 L1MEg_dup10313|chr12:10119738-10120315:+|1.0729046775157|0.4764444767746061|1.17|145.0|24|1|anti-sense L1MEg_dup10313|chr12:10119738-10120315:+|1.0729046775157|0.4764444767746061|1.17|145.0|24|1|anti-sense L1MEg_dup10313|chr12:10119738-10120315:+|1.0729046775157|0.4764444767746061|1.17|145.0|24|1|anti-sense MSMS UPN48_class_I_Rep_3 7 562.2921142578125 2 562.292756 1122.57096 NaN NaN NaN NaN NaN NaN NaN 53.987 1 57.57 57.07 58.07 3.5836 0 0 0 0.53105 1 11305 11305 6.7232 0 1 58447 13352 36901 36920 67255 67255 0.014577256147049411 YVIVVLTY 8 Unmodified _YVIVVLTY_ 0 0 0 L1MB4_dup4548|chr9:137685071-137685947:-|1.4662615980301683|0.0157495793061623|6.54|151.0|46|1|anti-sense L1MB4_dup4548|chr9:137685071-137685947:-|1.4662615980301683|0.0157495793061623|6.54|151.0|46|1|anti-sense L1MB4_dup4548|chr9:137685071-137685947:-|1.4662615980301683|0.0157495793061623|6.54|151.0|46|1|anti-sense MSMS UPN46_class_I_Rep_3 1 485.28515625 2 485.286411 968.55827 NaN NaN NaN NaN NaN NaN NaN 48.513 1 48.513 48.013 49.013 0 0 0 0 0.40604 1 10115 10115 2.5775 0 1 58448 10524 36902 36921 67256 67256 0.07273314222459248 YVIYFKYV 8 Unmodified _YVIYFKYV_ 0 0 0 REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|149|3|anti-sense REV__L1MA8_dup1439|chr2:230455362-230457826:-|4.08064505806178|0.4442904861375546|3.2|151.0|149|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.8005981445312 2 547.799686 1093.58482 NaN NaN NaN NaN NaN NaN NaN 31.233 1 34.935 34.435 35.435 3.7015 0 0 0 0.40738 1 4594 4594 0.79363 0 1 + 58449 25534 36903 36922 67257 67257 0.04177003113795763 YVKALFRR 8 Unmodified _YVKALFRR_ 0 0 0 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 ENSG00000154174|ENST00000284320|TOMM70 MULTI-MSMS UPN46_class_I_Rep_3 1 526.8215942382812 2 526.821818 1051.62908 0.041896 2.2072E-05 -0.21496 -0.00011325 -0.17306 -9.1173E-05 526.8216192694077 28.659 0.18611 28.659 28.529 28.716 0 15 13 2 0 0 0 0.82752 1 4438 4438 0 0 1 133610 58450 3662 36904 36923 67258 67258 0.10533452050640335 YVKDLNNVI 9 Unmodified _YVKDLNNVI_ 0 0 0 L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|39|3|sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|39|3|sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 540.0287475585938 2 539.300581 1076.58661 0.37147 0.00020033 0.17285 9.322E-05 0.54432 0.00029355 539.3004670182527 44.954 0.34386 48.467 48.238 48.582 3.5132 43 24 2 0 0 0 0.30034 2 8561 8561;8578 13.906 0 1 138460 58451 12529 36905 36924 67259;67260 67259 0.05138012131760661 YVKDLNNVI 9 Unmodified _YVKDLNNVI_ 0 0 0 L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|39|3|sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|39|3|sense L1ME2_dup78|chr1:12350060-12351289:+|1.6093570162735498|0.0614488535431474|4.71|151.0|39|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 539.300537109375 2 539.300581 1076.58661 0.47821 0.0002579 -0.41132 -0.00022183 0.066888 3.6073E-05 539.2999429599272 44.775 0.4225 48.412 48.324 48.746 3.6372 44 25 2 0 0 0 0.30034 2 8492 8492;8494 13.906 0 1 170600 58452 12529 36905 36924 67261;67262 67261 0.05138012131760661 YVKEGNHVIQY 11 Unmodified _YVKEGNHVIQY_ 0 0 0 REV__ENSG00000142065|ENST00000270001|ZFP14 REV__ENSG00000142065|ENST00000270001|ZFP14 MULTI-MSMS UPN47_class_I_Rep_2 3 450.9001159667969 3 450.56646 1348.67755 -0.55387 -0.00024956 -0.8381 -0.00037762 -1.392 -0.00062717 450.56611023591904 37.375 0.55774 40.773 40.463 41.021 3.3988 56 41 2 0 0 0 0.64031 1 7079 7079 4.1166 1.0444 1 62492 + 58453 19395 36906 36925 67263 67263 0.017158561092401214 YVKFHIFHYIK 11 Unmodified _YVKFHIFHYIK_ 0 0 0 REV__L1MB5_dup4034|chr9:92520300-92521114:+|1.0850597085404423|0.0062397745412896|7.44|150.0|32|2|anti-sense REV__L1MB5_dup4034|chr9:92520300-92521114:+|1.0850597085404423|0.0062397745412896|7.44|150.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 499.2816162109375 3 498.946724 1493.81834 0.22747 0.00011349 1.5117 0.00075426 1.7392 0.00086775 498.947476376111 36.401 0.2629 39.908 39.859 40.122 3.507 43 27 2 0 0 0 0.68081 1 6103 6103 0.45452 0 1 104040 + 58454 26067 36907 36926 67264 67264 0.09118479553308134 YVKFHIFHYIK 11 Unmodified _YVKFHIFHYIK_ 0 0 0 REV__L1MB5_dup4034|chr9:92520300-92521114:+|1.0850597085404423|0.0062397745412896|7.44|150.0|32|2|anti-sense REV__L1MB5_dup4034|chr9:92520300-92521114:+|1.0850597085404423|0.0062397745412896|7.44|150.0|32|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 3 498.946724 1493.81834 0.22747 0.00011349 1.5117 0.00075426 1.7392 0.00086775 498.947476376111 36.401 0.2629 39.908 39.859 40.122 3.507 0 0 NaN 0.45452 43 27 2 NaN NaN NaN NaN 0 NaN NaN 0 104040 + 58455 26067 36907 36926 0.09118479553308134 YVKHLCTF 8 Unmodified _YVKHLCTF_ 0 0 0 L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|28|3|sense L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|28|3|sense L1MC1_dup6093|chr7:87891947-87892726:-|1.2393330071821969|0.1473669445828344|3.07|151.0|28|3|sense MSMS UPN48_class_I_Rep_3 7 505.7622375488281 2 505.760038 1009.50552 NaN NaN NaN NaN NaN NaN NaN 59.02 1 62.543 62.043 63.043 3.5231 0 0 0 0.39624 1 12844 12844 9.3474 2.6243 1 58456 11179 36908 36927 67265 67265 0.001150328880271445 YVKIETKK 8 Unmodified _YVKIETKK_ 0 0 0 REV__ENSG00000156869|ENST00000646001|FRRS1 REV__ENSG00000156869|ENST00000646001|FRRS1 MULTI-MSMS UPN46_class_I_Rep_3 1 504.80865478515625 2 504.808042 1007.60153 0.00021439 1.0823E-07 1.4424 0.00072812 1.4426 0.00072823 504.8085735938287 27.568 0.17454 27.568 27.537 27.711 0 16 11 2 0 0 0 0.82752 1 4121 4121 2.5775 0 1 469780 + 58457 19807 36909 36928 67266 67266 0.09803503999762597 YVKKVTSTVFN 11 Unmodified _YVKKVTSTVFN_ 0 0 0 REV__ENSG00000162843|ENST00000437684|WDR64 REV__ENSG00000162843|ENST00000437684|WDR64 MULTI-MSMS UPN47_class_I_Rep_1 2 643.361328125 2 643.36117 1284.70779 0.5809 0.00037373 2.2315 0.0014357 2.8125 0.0018094 643.3620675713107 106.63 0.08828 110.34 110.31 110.4 3.7088 13 12 2 0 0 0 0.61292 1 26144 26144 4.897 1.9018 1 70777 + 58458 19945 36910 36929 67267 67267 0.07682214774422391 YVKLHPFTL 9 Unmodified _YVKLHPFTL_ 0 0 0 REV__L1MB3_dup7539|chr8:38311625-38312239:-|1.2222542079933605|0.0287248549150578|5.41|151.0|18|3|sense REV__L1MB3_dup7539|chr8:38311625-38312239:-|1.2222542079933605|0.0287248549150578|5.41|151.0|18|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 559.324462890625 2 559.32386 1116.63317 0.47607 0.00026628 -0.59662 -0.00033371 -0.12055 -6.7429E-05 559.3235664507046 69.104 0.51336 72.613 72.222 72.735 3.5094 65 36 2 0 0 0 0.42249 1 15842 15842 6.7232 1.9672 1 142910 + 58459 25914 36911 36930 67268 67268 0.07951496753707943 YVKRLAPA 8 Unmodified _YVKRLAPA_ 0 0 0 REV__ENST00000436115.6_1_19:1390815-1393403:+|nuORF REV__ENST00000436115.6_1_19:1390815-1393403:+|nuORF MSMS UPN46_class_I_Rep_3 1 459.28021240234375 2 459.281995 916.549437 NaN NaN NaN NaN NaN NaN NaN 90.66 1 90.66 90.16 91.16 0 0 0 0 0.40738 1 21866 21866 0.79363 0 1 + 58460 18553 36912 36931 67269 67269 0.08782385376639468 YVKTPNLPV 9 Unmodified _YVKTPNLPV_ 0 0 0 L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense MSMS UPN48_class_I_Rep_1 5 515.7998657226562 2 515.800217 1029.58588 NaN NaN NaN NaN NaN NaN NaN 48.203 1 51.726 51.226 52.226 3.5235 0 0 0 0.35339 1 9609 9609 7.9102 1.187 1 58461 14426 36913 36932 67270 67270 0.07227217482682136 YVKTPNLPV 9 Unmodified _YVKTPNLPV_ 0 0 0 L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense MSMS UPN48_class_I_Rep_2 6 515.7821044921875 2 515.800217 1029.58588 NaN NaN NaN NaN NaN NaN NaN 48.036 1 51.772 51.272 52.272 3.7361 0 0 0 0.35339 1 9554 9554 7.9102 1.187 1 58462 14426 36913 36932 67271 67271 0.07227217482682136 YVKTPNLPV 9 Unmodified _YVKTPNLPV_ 0 0 0 L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense L1PA5_dup1278|chr2:148705458-148710905:+|3.324900325403711|0.1392116224909052|4.58|151.0|12|1|sense MSMS UPN48_class_I_Rep_3 7 515.7986450195312 2 515.800217 1029.58588 NaN NaN NaN NaN NaN NaN NaN 48.108 1 51.742 51.242 52.242 3.6339 0 0 0 0.35339 1 9514 9514 7.9102 0 1 58463 14426 36913 36932 67272 67272 0.07227217482682136 YVKVSHIFS 9 Unmodified _YVKVSHIFS_ 0 0 0 ENSG00000213988|ENST00000418063|ZNF90 ENSG00000213988|ENST00000418063|ZNF90 ENSG00000213988|ENST00000418063|ZNF90 MULTI-MSMS UPN48_class_I_Rep_2 6 540.2977294921875 2 540.297842 1078.58113 0.4365 0.00023584 -0.59189 -0.0003198 -0.15539 -8.3956E-05 540.2974499666732 37.874 0.44752 41.591 41.405 41.852 3.7164 56 41 2 0 0 0 0.36392 2 6575 6537;6575 10.074 0 1 96537 58464 5607 36914 36933 67273;67274 67274 0.04498333339938654 YVKVSHIFS 9 Unmodified _YVKVSHIFS_ 0 0 0 ENSG00000213988|ENST00000418063|ZNF90 ENSG00000213988|ENST00000418063|ZNF90 ENSG00000213988|ENST00000418063|ZNF90 MSMS UPN48_class_I_Rep_3 7 540.2977905273438 2 540.297842 1078.58113 NaN NaN NaN NaN NaN NaN NaN 37.854 1 41.514 41.014 42.014 3.6595 0 0 0 0.37692 1 6430 6430 6.2058 0 1 58465 5607 36914 36933 67275 67275 0.04498333339938654 YVKWRLRV 8 Unmodified _YVKWRLRV_ 0 0 0 nc|ENSG00000104884|P18074-2|ERCC2;ENSG00000104884|ENST00000391945|ERCC2 nc|ENSG00000104884|P18074-2|ERCC2 nc|ENSG00000104884|P18074-2|ERCC2 MSMS UPN46_class_I_Rep_3 1 560.3419799804688 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 101.13 1 101.13 100.63 101.63 0 0 0 0 0.40746 1 24673 24673 0.69038 0 1 58466 1711 36915 36934 67276 67276 0.11669427459014514 YVLEELKH 8 Unmodified _YVLEELKH_ 0 0 0 ENST00000609229.1_1_22:18904401-18907344:-|nuORF;ENST00000313755.9_1_22:18900690-18907344:-|nuORF;ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH ENST00000609229.1_1_22:18904401-18907344:-|nuORF ENST00000609229.1_1_22:18904401-18907344:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 515.7830200195312 2 515.782025 1029.5495 0.23834 0.00012293 0.45611 0.00023525 0.69445 0.00035819 515.7823404217078 48.412 0.46427 51.936 51.672 52.136 3.5239 51 29 2 0 0 0 0.82752 1 9715 9715 12.532 12.532 1 110740 58467 1466 36916 36935 67277 67277 0.035903405860153725 YVLEELKH 8 Unmodified _YVLEELKH_ 0 0 0 ENST00000609229.1_1_22:18904401-18907344:-|nuORF;ENST00000313755.9_1_22:18900690-18907344:-|nuORF;ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH ENST00000609229.1_1_22:18904401-18907344:-|nuORF ENST00000609229.1_1_22:18904401-18907344:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 515.7825317382812 2 515.782025 1029.5495 0.24349 0.00012559 0.41359 0.00021332 0.65707 0.00033891 515.7822853789322 48.121 0.6015 51.858 51.573 52.175 3.7361 68 41 2 0 0 0 0.82752 1 9642 9642 12.532 0 1 147030 58468 1466 36916 36935 67278 67278 0.035903405860153725 YVLEELKH 8 Unmodified _YVLEELKH_ 0 0 0 ENST00000609229.1_1_22:18904401-18907344:-|nuORF;ENST00000313755.9_1_22:18900690-18907344:-|nuORF;ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH ENST00000609229.1_1_22:18904401-18907344:-|nuORF ENST00000609229.1_1_22:18904401-18907344:-|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 515.7836303710938 2 515.782025 1029.5495 0.25563 0.00013185 0.6027 0.00031086 0.85833 0.00044271 515.7823523451821 48.353 0.49462 51.987 51.721 52.216 3.6339 61 33 2 0 0 0 0.82752 3 9559 9559;9582;9634 24.674 0 1 151850 58469 1466 36916 36935 67279;67280;67281 67279 0.035903405860153725 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 601.8065795898438 2 601.303421 1200.59229 0.4307 0.00025898 0.22212 0.00013356 0.65282 0.00039254 601.3033276970301 85.105 0.48772 88.711 88.677 89.164 3.6059 99 60 2 0 0 0 0.38932 5 20354 20354;20380;20393;20433;20466 20.454 3.5113 1 275050 58470 10777 36917 36936 67282;67283;67284;67285;67286 67282 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_1 5 601.3033447265625 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 84.975 1 88.581 88.081 89.081 3.6059 0 0 0 0.53105 1 20330 20330 25.399 0 1 58471 10777 36917 36936 67287 67287 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 601.3035278320312 2 601.303421 1200.59229 0.48453 0.00029135 0.11574 6.9594E-05 0.60027 0.00036094 601.303313061908 84.995 0.16009 88.689 88.647 88.807 3.6937 29 23 2 0 0 0 0.33585 2 20210 20210;20216 25.399 8.457 1 371220 58472 10777 36917 36936 67288;67289 67288 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.3045043945312 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 84.853 1 88.547 88.047 89.047 3.6937 0 0 0 0.53105 1 20186 20186 25.399 0 1 58473 10777 36917 36936 67290 67290 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.3031616210938 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 85.137 1 88.83 88.33 89.33 3.6937 0 0 0 0.53105 1 20243 20243 20.454 0 1 58474 10777 36917 36936 67291 67291 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.3037109375 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 85.262 1 88.968 88.468 89.468 3.7058 0 0 0 0.53105 1 20274 20274 20.454 0 1 58475 10777 36917 36936 67292 67292 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_2 6 601.3035278320312 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 85.305 1 89.011 88.511 89.511 3.7058 0 0 0 0.53105 1 20284 20284 20.454 0 1 58476 10777 36917 36936 67293 67293 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_3 7 601.3038940429688 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 84.89 1 88.639 88.139 89.139 3.7494 0 0 0 0.53105 1 20139 20139 25.399 0 1 58477 10777 36917 36936 67294 67294 1.651327556828619E-05 YVLFCDCLLL 10 Unmodified _YVLFCDCLLL_ 0 0 0 L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense L1MB7_dup19816|chr17:31282400-31282941:-|2.013737799016885|0.024029098112296|6.39|151.0|36|3|anti-sense MSMS UPN48_class_I_Rep_3 7 601.3041381835938 2 601.303421 1200.59229 NaN NaN NaN NaN NaN NaN NaN 85.14 1 88.89 88.39 89.39 3.7494 0 0 0 0.53105 1 20191 20191 20.454 0 1 58478 10777 36917 36936 67295 67295 1.651327556828619E-05 YVLFCRELS 9 Unmodified _YVLFCRELS_ 0 0 0 REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF MSMS UPN48_class_I_Rep_1 5 565.30322265625 2 565.289159 1128.56377 NaN NaN NaN NaN NaN NaN NaN 54.623 1 58.137 57.637 58.637 3.5143 0 0 0 0.34056 1 11583 11583 8.5933 0.68312 1 + 58479 19912 36918 36937 67296 67296 0.004626697426374449 YVLFIYVLC 9 Unmodified _YVLFIYVLC_ 0 0 0 REV__ENSG00000136048.14,DRAM1,chr12,+,I2.1,101890222,101897862|23|7.53|1|intron REV__ENSG00000136048.14,DRAM1,chr12,+,I2.1,101890222,101897862|23|7.53|1|intron MSMS UPN48_class_I_Rep_1 5 566.811279296875 2 566.809196 1131.60384 NaN NaN NaN NaN NaN NaN NaN 73.077 1 76.558 76.058 77.058 3.4812 0 0 0 0.3264 1 17197 17197 9.3474 0 1 + 58480 19171 36919 36938 67297 67297 0.04330216413200105 YVLFIYVLC 9 Unmodified _YVLFIYVLC_ 0 0 0 REV__ENSG00000136048.14,DRAM1,chr12,+,I2.1,101890222,101897862|23|7.53|1|intron REV__ENSG00000136048.14,DRAM1,chr12,+,I2.1,101890222,101897862|23|7.53|1|intron MSMS UPN48_class_I_Rep_2 6 566.8110961914062 2 566.809196 1131.60384 NaN NaN NaN NaN NaN NaN NaN 73.105 1 76.67 76.17 77.17 3.5645 0 0 0 0.381 1 17151 17151 5.2307 0 1 + 58481 19171 36919 36938 67298 67298 0.04330216413200105 YVLFPRVS 8 Unmodified _YVLFPRVS_ 0 0 0 L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|80|3|anti-sense L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|80|3|anti-sense L1MB5_dup3802|chr9:5706459-5707655:-|2.063551528051616|0.1446033095764503|3.83|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_3 7 490.7847900390625 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 88.175 1 91.985 91.485 92.485 3.8104 0 0 0 0.40738 1 20929 20929 0.79363 0 1 58482 10617 36920 36939 67299 67299 0.05850965656804874 YVLFRFML 8 Unmodified _YVLFRFML_ 0 0 0 L1MCa_dup4007|chr9:92703784-92704581:-|1.1787211238154207|0.0119595474748218|6.62|151.0|49|2|anti-sense L1MCa_dup4007|chr9:92703784-92704581:-|1.1787211238154207|0.0119595474748218|6.62|151.0|49|2|anti-sense L1MCa_dup4007|chr9:92703784-92704581:-|1.1787211238154207|0.0119595474748218|6.62|151.0|49|2|anti-sense MSMS UPN48_class_I_Rep_1 5 544.8020629882812 2 544.801706 1087.58886 NaN NaN NaN NaN NaN NaN NaN 20.763 1 24.308 23.808 24.808 3.5454 0 0 0 0.40738 1 1799 1799 0.79363 0 1 58483 11805 36921 36940 67300 67300 0.048567693358791075 YVLGIEHLS 9 Unmodified _YVLGIEHLS_ 0 0 0 L1ME4b_dup3809|chr3:47073682-47074181:+|1.7038368617096995|0.1145516041710196|3.89|151.0|32|2|anti-sense L1ME4b_dup3809|chr3:47073682-47074181:+|1.7038368617096995|0.1145516041710196|3.89|151.0|32|2|anti-sense L1ME4b_dup3809|chr3:47073682-47074181:+|1.7038368617096995|0.1145516041710196|3.89|151.0|32|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.2850952148438 2 515.782025 1029.5495 0.25563 0.00013185 0.6027 0.00031086 0.85833 0.00044271 515.7823523451821 48.353 0.49462 51.987 51.721 52.216 3.6339 61 33 2 0 0 0 0.25207 1 9533 9533 16.942 4.4107 1 151850 58484 12927 36922 36941 67301 67301 0.03590340585992635 YVLHSTKTTYH 11 Unmodified _YVLHSTKTTYH_ 0 0 0 Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|10|1|sense Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|10|1|sense Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_1 2 450.9002990722656 3 450.56646 1348.67755 -0.35894 -0.00016173 -0.81189 -0.00036581 -1.1708 -0.00052754 450.5660483057336 36.957 0.48336 40.627 40.435 40.919 3.6692 69 40 2 0 0 0 0.64031 1 6949 6949 4.1166 1.0444 1 108610 58485 459 36923 36942 67302 67302 0.01715856109217384 YVLHSTKTTYH 11 Unmodified _YVLHSTKTTYH_ 0 0 0 Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|10|1|sense Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|10|1|sense Charlie1a_dup1520|chr4:78792276-78793129:+|1.0275740220502476|0.0416888461164138|4.62|151.0|10|1|sense MULTI-MSMS UPN47_class_I_Rep_2 3 450.9001159667969 3 450.56646 1348.67755 -0.55387 -0.00024956 -0.8381 -0.00037762 -1.392 -0.00062717 450.56611023591904 37.375 0.55774 40.773 40.463 41.021 3.3988 56 41 2 0 0 0 0.64031 1 7138 7138 4.1166 1.0444 1 62492 58486 459 36923 36942 67303 67303 0.01715856109217384 YVLIDPNY 8 Unmodified _YVLIDPNY_ 0 0 0 REV__L1PA16_dup13568|chr21:5447299-5448062:+|1.8345883336031312|0.0493855389454629|5.22|149.0|34|2|anti-sense REV__L1PA16_dup13568|chr21:5447299-5448062:+|1.8345883336031312|0.0493855389454629|5.22|149.0|34|2|anti-sense MSMS UPN48_class_I_Rep_1 5 498.7850036621094 2 498.755475 995.496398 NaN NaN NaN NaN NaN NaN NaN 114.88 1 118.51 118.01 119.01 3.6301 0 0 0 0.40738 1 27934 27934 0.79363 0 1 + 58487 29356 36924 36943 67304 67304 -0.0015303719667372206 YVLIGIFKF 9 Unmodified _YVLIGIFKF_ 0 0 0 L1MD1_dup4787|chr11:78407657-78408610:+|5.184756011925946|0.025686735904547|7.66|151.0|42|2|anti-sense L1MD1_dup4787|chr11:78407657-78408610:+|5.184756011925946|0.025686735904547|7.66|151.0|42|2|anti-sense L1MD1_dup4787|chr11:78407657-78408610:+|5.184756011925946|0.025686735904547|7.66|151.0|42|2|anti-sense MSMS UPN48_class_I_Rep_1 5 550.7786865234375 2 550.331153 1098.64775 NaN NaN NaN NaN NaN NaN NaN 51.765 1 55.288 54.788 55.788 3.5227 0 0 0 0.39326 1 10710 10710 2.3027 0 1 58488 11955 36925 36944 67305 67305 0.10237568901834493 YVLILVLLL 9 Unmodified _YVLILVLLL_ 0 0 0 REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A MSMS UPN48_class_I_Rep_1 5 529.7715454101562 2 529.864829 1057.7151 NaN NaN NaN NaN NaN NaN NaN 87.988 1 91.607 91.107 92.107 3.6187 0 0 0 0.40038 1 21098 21098 0.6015 0 1 + 58489 18516 36926 36945 67306 67306 0.18855599112794152 YVLIVLMK 8 Unmodified _YVLIVLMK_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS UPN46_class_I_Rep_3 1 489.8067626953125 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 25.564 1 25.564 25.064 26.064 0 0 0 0 0.40738 1 3527 3527 0.79363 0 1 58490 3242 36927 36946 67307 67307 0.10866537621382122 YVLIVLMK 8 Unmodified _YVLIVLMK_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS UPN48_class_I_Rep_2 6 489.806396484375 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 112.75 1 116.41 115.91 116.91 3.6648 0 0 0 0.40746 1 26877 26877 0.69038 0 1 58491 3242 36927 36946 67308 67308 0.10866537621382122 YVLLAEGVINA 11 Unmodified _YVLLAEGVINA_ 0 0 0 ENST00000462917.1_1_17:39846204-39847075:+|nuORF ENST00000462917.1_1_17:39846204-39847075:+|nuORF ENST00000462917.1_1_17:39846204-39847075:+|nuORF MSMS UPN47_class_I_Rep_1 2 581.3296508789062 2 581.329339 1160.64412 NaN NaN NaN NaN NaN NaN NaN 66.625 1 69.983 69.483 70.483 3.3576 0 0 0 0.38417 1 15971 15971 4.897 1.3005 1 58492 6872 36928 36947 67309 67309 0.07022854337355966 YVLLAEGVINA 11 Unmodified _YVLLAEGVINA_ 0 0 0 ENST00000462917.1_1_17:39846204-39847075:+|nuORF ENST00000462917.1_1_17:39846204-39847075:+|nuORF ENST00000462917.1_1_17:39846204-39847075:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 581.81884765625 2 581.329339 1160.64412 0.43817 0.00025472 0.0052639 3.0601E-06 0.44343 0.00025778 581.3292505524337 66.183 1.3706 69.368 68.926 70.296 3.1853 220 98 3 0 0 0 0.37961 1 16215 16215 10.8 0 1 770560 58493 6872 36928 36947 67310 67310 0.07022854337355966 YVLLDSKSHT 10 Unmodified _YVLLDSKSHT_ 0 0 0 REV__ENSG00000095951|ENST00000379388|HIVEP1 REV__ENSG00000095951|ENST00000379388|HIVEP1 MSMS UPN48_class_I_Rep_2 6 581.807861328125 2 581.808771 1161.60299 NaN NaN NaN NaN NaN NaN NaN 53.794 1 57.385 56.885 57.885 3.5914 0 0 0 0.53105 1 11308 11308 1.6526 0 1 + 58494 18055 36929 36948 67311 67311 0.028650932978280252 YVLLLKVI 8 Unmodified _YVLLLKVI_ 0 0 0 L1ME3Cz_dup10817|chr17:16019642-16019844:-|1.570658435926907|0.1768747995181073|3.15|151.0|11|1|anti-sense L1ME3Cz_dup10817|chr17:16019642-16019844:-|1.570658435926907|0.1768747995181073|3.15|151.0|11|1|anti-sense L1ME3Cz_dup10817|chr17:16019642-16019844:-|1.570658435926907|0.1768747995181073|3.15|151.0|11|1|anti-sense MSMS UPN48_class_I_Rep_2 6 480.7707214355469 2 480.828246 959.64194 NaN NaN NaN NaN NaN NaN NaN 21.399 1 25.045 24.545 25.545 3.6459 0 0 0 0.40746 1 2014 2014 0.69038 0 1 58495 12758 36930 36949 67312 67312 0.16050470390189275 YVLLSSALI 9 Unmodified _YVLLSSALI_ 0 0 0 REV__L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|158|2|anti-sense REV__L1MA4_dup3264|chr5:94766685-94769498:+|1.103564604554502|0.009062089174648|6.93|150.0|158|2|anti-sense MSMS UPN48_class_I_Rep_2 6 489.79693603515625 2 489.797143 977.579734 NaN NaN NaN NaN NaN NaN NaN 83.813 1 87.494 86.994 87.994 3.6814 0 0 0 0.28335 1 19933 19933 11.64 0 1 + 58496 25155 36931 36950 67313 67313 0.09004699251181592 YVLMFDSR 8 Unmodified _YVLMFDSR_ 0 0 0 L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|151|3|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|151|3|sense L1MB7_dup13678|chr10:44942549-44946872:-|1.4592138481339807|0.3428250524182613|2.09|151.0|151|3|sense MSMS UPN46_class_I_Rep_3 1 515.7374267578125 2 515.754953 1029.49535 NaN NaN NaN NaN NaN NaN NaN 115.67 1 115.67 115.17 116.17 0 0 0 0 0.40738 1 28612 28612 0.79363 0 1 58497 10702 36932 36951 67314 67314 -0.0182157483723131 YVLNHWATP 9 Unmodified _YVLNHWATP_ 0 0 0 REV__ENST00000534405.5_1_11:6413241-6415834:+|nuORF REV__ENST00000534405.5_1_11:6413241-6415834:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 550.779541015625 2 550.779816 1099.54508 0.48928 0.00026949 -0.21214 -0.00011684 0.27714 0.00015264 550.7796971891042 51.196 0.59756 54.864 54.575 55.173 3.6679 69 40 2 0 0 0 0.33654 1 10591 10591 11.64 2.2929 1 179470 + 58498 20167 36933 36952 67315 67315 -0.0007112383691492141 YVLVDSYFV 9 Unmodified _YVLVDSYFV_ 0 0 0 REV__L1PB1_dup5904|chr7:92686182-92687055:-|2.0300946239635675|0.0038831351614209|9.03|150.0|46|2|anti-sense REV__L1PB1_dup5904|chr7:92686182-92687055:-|2.0300946239635675|0.0038831351614209|9.03|150.0|46|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_1 5 552.2579345703125 2 552.784233 1103.55391 0.59138 0.00032691 -1.0594 -0.00058559 -0.46797 -0.00025869 553.2854159078083 65.949 0.21693 69.401 69.319 69.536 3.4516 14 13 2 0 0 0 0.12182 1 15064 15064 5.2307 0 1 187590 + 58499 30457 36934 36953 67316 67316 0.006278050088894815 YVLVKNIT 8 Unmodified _YVLVKNIT_ 0 0 0 ENST00000533632.5_1_11:118894278-118894506:+|nuORF ENST00000533632.5_1_11:118894278-118894506:+|nuORF ENST00000533632.5_1_11:118894278-118894506:+|nuORF MSMS UPN46_class_I_Rep_3 1 475.2875671386719 2 475.289485 948.564418 NaN NaN NaN NaN NaN NaN NaN 112.32 1 112.32 111.82 112.82 0 0 0 0 0.40753 1 27724 27724 0.6015 0 1 58500 7313 36935 36954 67317 67317 0.08807832453976516 YVLVKNIT 8 Unmodified _YVLVKNIT_ 0 0 0 ENST00000533632.5_1_11:118894278-118894506:+|nuORF ENST00000533632.5_1_11:118894278-118894506:+|nuORF ENST00000533632.5_1_11:118894278-118894506:+|nuORF MSMS UPN47_class_I_Rep_3 4 475.2877502441406 2 475.289485 948.564418 NaN NaN NaN NaN NaN NaN NaN 112.27 1 115.79 115.29 116.29 3.5207 0 0 0 0.40753 1 27563 27563 0.6015 0 1 58501 7313 36935 36954 67318 67318 0.08807832453976516 YVLVKNIT 8 Unmodified _YVLVKNIT_ 0 0 0 ENST00000533632.5_1_11:118894278-118894506:+|nuORF ENST00000533632.5_1_11:118894278-118894506:+|nuORF ENST00000533632.5_1_11:118894278-118894506:+|nuORF MSMS UPN47_class_I_Rep_3 4 475.28802490234375 2 475.289485 948.564418 NaN NaN NaN NaN NaN NaN NaN 113.75 1 117.25 116.75 117.75 3.4963 0 0 0 0.40753 1 27910 27910 0.6015 0 1 58502 7313 36935 36954 67319 67319 0.08807832453976516 YVLVLHLQ 8 Unmodified _YVLVLHLQ_ 0 0 0 REV__L1ME3D_dup4056|chr20:32389061-32389486:-|1.7645748966010013|0.0147555263119906|6.9|151.0|31|3|anti-sense REV__L1ME3D_dup4056|chr20:32389061-32389486:-|1.7645748966010013|0.0147555263119906|6.9|151.0|31|3|anti-sense MSMS UPN47_class_I_Rep_3 4 492.79541015625 2 492.797478 983.580402 NaN NaN NaN NaN NaN NaN NaN 55.862 1 59.04 58.54 59.54 3.1779 0 0 0 0.40581 1 12799 12799 2.8892 0 1 + 58503 28150 36936 36955 67320 67320 0.08795538690890226 YVLVQLTL 8 Unmodified _YVLVQLTL_ 0 0 0 REV__ENST00000444100.2_1_2:61244779-61244863:+|nuORF REV__ENST00000444100.2_1_2:61244779-61244863:+|nuORF MSMS UPN48_class_I_Rep_3 7 474.79119873046875 2 474.791861 947.569169 NaN NaN NaN NaN NaN NaN NaN 110.61 1 114.28 113.78 114.78 3.6654 0 0 0 0.40738 1 26248 26248 0.79363 0 1 + 58504 22345 36937 36956 67321 67321 0.09328716596746744 YVLYQYFT 8 Unmodified _YVLYQYFT_ 0 0 0 REV__L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|155|1|anti-sense REV__L1PA7_dup3426|chr4:101131286-101135231:+|1.8008773181648976|0.0413687888523481|5.44|151.0|155|1|anti-sense MSMS UPN47_class_I_Rep_3 4 548.7734985351562 2 548.771126 1095.5277 NaN NaN NaN NaN NaN NaN NaN 31.781 1 35.08 34.58 35.58 3.2991 0 0 0 0.40472 1 5461 5461 4.3292 0 1 + 58505 28815 36938 36957 67322 67322 -0.016244641625689837 YVMIKLVI 8 Unmodified _YVMIKLVI_ 0 0 0 L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|101|2|anti-sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|101|2|anti-sense L1MA5_dup29|chr1:41172208-41174229:+|5.327613086035537|0.1501864222921853|5.15|151.0|101|2|anti-sense MSMS UPN47_class_I_Rep_3 4 489.8057861328125 2 489.806457 977.598361 NaN NaN NaN NaN NaN NaN NaN 64.014 1 67.188 66.688 67.688 3.1741 0 0 0 0.40746 1 15280 15280 0.69038 0 1 58506 9894 36939 36958 67323 67323 0.10866537621382122 YVMILFKI 8 Unmodified _YVMILFKI_ 0 0 0 ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF ENST00000398417.6_1_18:48605912-48606041:+|nuORF MSMS UPN47_class_I_Rep_3 4 513.8068237304688 2 513.806457 1025.59836 NaN NaN NaN NaN NaN NaN NaN 87.341 1 90.722 90.222 91.222 3.3801 0 0 0 0.40798 1 21882 21882 0 0 1 58507 6585 36940 36959 67324 67324 0.08658537621408868 YVMRCGCK 8 Unmodified _YVMRCGCK_ 0 0 0 REV__nc|ENSG00000213199|Q9UHC3-4|ASIC3 REV__nc|ENSG00000213199|Q9UHC3-4|ASIC3 MSMS UPN48_class_I_Rep_1 5 480.21630859375 2 480.216626 958.418698 NaN NaN NaN NaN NaN NaN NaN 113.08 1 116.71 116.21 117.21 3.6314 0 0 0 0.40738 1 27463 27463 0.79363 0 1 + 58508 21242 36941 36960 67325 67325 -0.0621741292969773 YVMYHRLL 8 Unmodified _YVMYHRLL_ 0 0 0 L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|133|3|anti-sense L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|133|3|anti-sense L1MD1_dup6456|chr20:41432183-41434381:+|1.8970290200156144|0.0512835380094139|5.21|151.0|133|3|anti-sense MSMS UPN47_class_I_Rep_3 4 547.795654296875 2 547.794412 1093.57427 NaN NaN NaN NaN NaN NaN NaN 30.396 1 33.707 33.207 34.207 3.3116 0 0 0 0.40738 1 5040 5040 0.79363 0 1 58509 11974 36942 36961 67326 67326 0.031226971877231335 YVMYPVVIQ 9 Unmodified _YVMYPVVIQ_ 0 0 0 L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|167|1|anti-sense L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|167|1|anti-sense L1PA4_dup5225|chr7:36712589-36716970:+|2.1597637052066|0.0562956671065748|5.26|151.0|167|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 556.297607421875 2 556.296453 1110.57835 0.45063 0.00025068 2.0383 0.0011339 2.4889 0.0013846 556.2976540504043 66.978 0.10329 70.486 70.414 70.517 3.5077 10 7 2 0 0 0 0.23311 1 15260 15260 18.135 6.6403 1 73981 58510 14360 36943 36962 67327 67327 0.02748741890763995 YVNACFSA 8 Unmodified _YVNACFSA_ 0 0 0 REV__ENST00000463718.5_1_12:21428225-21457481:-|nuORF REV__ENST00000463718.5_1_12:21428225-21457481:-|nuORF MSMS UPN48_class_I_Rep_1 5 437.6910400390625 2 437.691821 873.369089 NaN NaN NaN NaN NaN NaN NaN 61.149 1 64.618 64.118 65.118 3.4688 0 0 0 0.40738 1 13582 13582 0.79363 0 1 + 58511 17943 36944 36963 67328 67328 -0.07266081342515918 YVNFFILYY 9 Unmodified _YVNFFILYY_ 0 0 0 ENST00000299957.10_1_15:44705749-44705851:+|nuORF ENST00000299957.10_1_15:44705749-44705851:+|nuORF ENST00000299957.10_1_15:44705749-44705851:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.3143310546875 2 621.3157 1240.61685 NaN NaN NaN NaN NaN NaN NaN 65.098 1 68.278 67.778 68.778 3.1795 0 0 0 0.38478 1 15612 15612 4.3292 0 1 58512 6067 36945 36964 67329 67329 0.006163707969790266 YVNFFILYY 9 Unmodified _YVNFFILYY_ 0 0 0 ENST00000299957.10_1_15:44705749-44705851:+|nuORF ENST00000299957.10_1_15:44705749-44705851:+|nuORF ENST00000299957.10_1_15:44705749-44705851:+|nuORF MSMS UPN47_class_I_Rep_3 4 621.3158569335938 2 621.3157 1240.61685 NaN NaN NaN NaN NaN NaN NaN 68.148 1 71.345 70.845 71.845 3.1977 0 0 0 0.39518 1 16540 16540 1.8442 0 1 58513 6067 36945 36964 67330 67330 0.006163707969790266 YVNHRFYF 8 Unmodified _YVNHRFYF_ 0 0 0 L1ME1_dup19442|chr10:42803740-42804730:-|1.478684448369047|0.0925309299507159|4.0|151.0|47|1|anti-sense L1ME1_dup19442|chr10:42803740-42804730:-|1.478684448369047|0.0925309299507159|4.0|151.0|47|1|anti-sense L1ME1_dup19442|chr10:42803740-42804730:-|1.478684448369047|0.0925309299507159|4.0|151.0|47|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 574.2952270507812 2 573.279983 1144.54541 0.51294 0.00029406 0.18403 0.0001055 0.69696 0.00039955 573.2800368576835 77.28 0.79124 80.881 80.602 81.394 3.6016 141 70 3 0 0 0 0.82752 1 18304 18304 19.439 0.18201 1 400290 58514 12284 36946 36965 67331 67331 -0.02107704117065623 YVNIYVIK 8 Unmodified _YVNIYVIK_ 0 0 0 REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|19|2|anti-sense REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|19|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 506.2970886230469 2 506.29731 1010.58007 -0.22006 -0.00011141 -0.038681 -1.9584E-05 -0.25874 -0.000131 506.2971442314211 33.348 0.84001 37.047 36.661 37.501 3.6983 103 56 2 0 0 0 0.82752 1 5883 5883 5.2307 0.47466 1 118950 + 58515 25600 36947 36966 67332 67332 0.07520118971046941 YVNIYVIK 8 Unmodified _YVNIYVIK_ 0 0 0 REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|19|2|anti-sense REV__L1MA9_dup12262|chr12:66218639-66219033:-|1.478710898936426|0.0242633625135361|5.93|151.0|19|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 506.29731 1010.58007 -0.31733 -0.00016066 -0.082785 -4.1914E-05 -0.40011 -0.00020258 506.29711247006315 33.911 0.82117 37.186 36.855 37.676 3.2748 0.071393 -4.2408E-05 NaN 5.2307 97 56 2 NaN NaN NaN NaN 0 NaN NaN 0 116060 + 58516 25600 36947 36966 0.07520118971046941 YVNKEEVF 8 Unmodified _YVNKEEVF_ 0 0 0 REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense REV__L1M1_dup1800|chr3:142328208-142328645:-|1.001971026238338|0.0246313635649943|5.35|151.0|24|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 514.2946166992188 2 514.258382 1026.50221 0.2887 0.00014847 -0.17048 -8.7671E-05 0.11822 6.0794E-05 514.2582978938714 69.863 0.68025 73.322 73.058 73.738 3.4598 70 53 2 0 0 0 0.82752 1 16175 16175 11.64 11.64 1 167470 + 58517 24026 36948 36967 67333 67333 -0.009979386850091032 YVNKWRDI 8 Unmodified _YVNKWRDI_ 0 0 0 L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|186|3|sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|186|3|sense L1MB8_dup393|chr1:84158334-84163805:-|1.9431179120848665|0.0882062594547087|4.46|151.0|186|3|sense MSMS UPN48_class_I_Rep_1 5 547.2928466796875 2 547.293091 1092.57163 NaN NaN NaN NaN NaN NaN NaN 48.839 1 52.363 51.863 52.863 3.5239 0 0 0 0.4044 1 9806 9806 4.756 0 1 58518 10999 36949 36968 67334 67334 0.029045650544276214 YVNNFFAILL 10 Unmodified _YVNNFFAILL_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS UPN47_class_I_Rep_3 4 405.2402038574219 3 405.225375 1212.6543 NaN NaN NaN NaN NaN NaN NaN 77.129 1 80.398 79.898 80.898 3.269 0 0 0 0.53105 1 19194 19194 0.77653 0 1 + 58519 18034 36950 36969 67335 67335 0.056474620625749594 YVNRKEKTH 9 Unmodified _YVNRKEKTH_ 0 0 0 nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6 nc|ENSG00000188820|Q5R3K3-2|CALHM6 nc|ENSG00000188820|Q5R3K3-2|CALHM6 MSMS UPN48_class_I_Rep_3 7 587.8053588867188 2 587.820004 1173.62546 NaN NaN NaN NaN NaN NaN NaN 42.892 1 46.533 46.033 47.033 3.6415 0 0 0 0.35339 1 7915 7915 7.9102 3.1541 1 58520 5255 36951 36970 67336 67336 0.04558737486127029 YVNRPFPV 8 Unmodified _YVNRPFPV_ 0 0 0 ENSG00000102794|ENST00000377462|ACOD1 ENSG00000102794|ENST00000377462|ACOD1 ENSG00000102794|ENST00000377462|ACOD1 MULTI-MSMS UPN48_class_I_Rep_2 6 496.2708435058594 2 496.271627 990.528701 0.20658 0.00010252 0.076589 3.8009E-05 0.28317 0.00014053 496.2715542707621 48.981 0.51814 52.698 52.421 52.939 3.7175 54 33 2 0 0 0 0.82752 1 9834 9834 6.3541 6.3541 1 155310 58521 1625 36952 36971 67337 67337 0.03305794996992972 YVNSYQLIS 9 Unmodified _YVNSYQLIS_ 0 0 0 REV__ENST00000461020.5_1_3:50385039-50386041:-|nuORF REV__ENST00000461020.5_1_3:50385039-50386041:-|nuORF MULTI-SECPEP UPN48_class_I_Rep_2 6 544.2545776367188 2 543.776939 1085.53933 0.58249 0.00031675 0.16124 8.768E-05 0.74374 0.00040443 543.7769426603219 54.473 0.27522 58.055 57.838 58.113 3.5817 23 16 2 0 0 0 0.12034 1 11480 11480 7.2892 7.2892 1 59839 + 58522 18527 36953 36972 67338 67338 -2.2671392343909247E-05 YVPCDEVVSY 10 Unmodified _YVPCDEVVSY_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_1 2 587.258056640625 2 587.260265 1172.50598 NaN NaN NaN NaN NaN NaN NaN 65.237 1 68.593 68.093 69.093 3.3557 0 0 0 0.53105 1 15547 15547 5.7319 1.4026 1 58523 11336 36954 36973 67339 67339 -0.07337636973466033 YVPCDEVVSY 10 Unmodified _YVPCDEVVSY_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_2 3 587.2592163085938 2 587.260265 1172.50598 NaN NaN NaN NaN NaN NaN NaN 65.722 1 68.978 68.478 69.478 3.2556 0 0 0 0.53105 1 15744 15744 13.042 5.1323 1 58524 11336 36954 36973 67340 67340 -0.07337636973466033 YVPCDEVVSY 10 Unmodified _YVPCDEVVSY_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 587.25830078125 2 587.260265 1172.50598 NaN NaN NaN NaN NaN NaN NaN 65.639 1 68.818 68.318 69.318 3.1795 0 0 0 0.53105 1 15777 15777 12.241 5.5175 1 58525 11336 36954 36973 67341 67341 -0.07337636973466033 YVPCDEVVSY 10 Unmodified _YVPCDEVVSY_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 587.2579345703125 2 587.260265 1172.50598 NaN NaN NaN NaN NaN NaN NaN 65.907 1 69.092 68.592 69.592 3.1853 0 0 0 0.53105 1 15860 15860 13.042 5.1323 1 58526 11336 36954 36973 67342 67342 -0.07337636973466033 YVPCDEVVSY 10 Unmodified _YVPCDEVVSY_ 0 0 0 L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense L1MC3_dup3987|chr5:80416555-80418148:-|1.8529225871092985|0.0373437025766165|5.63|151.0|63|1|anti-sense MSMS UPN47_class_I_Rep_3 4 587.2400512695312 2 587.260265 1172.50598 NaN NaN NaN NaN NaN NaN NaN 66.167 1 69.352 68.852 69.852 3.1853 0 0 0 0.53105 1 15940 15940 18.146 5.1039 1 58527 11336 36954 36973 67343 67343 -0.07337636973466033 YVPGFAHIP 9 Unmodified _YVPGFAHIP_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MSMS UPN48_class_I_Rep_1 5 500.3565979003906 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 33.588 1 37.108 36.608 37.608 3.5201 0 0 0 0.4029 1 5259 5259 0 0 1 58528 1838 36955 36974 67344 67344 0.01802392622687421 YVPGLWTWS 9 Unmodified _YVPGLWTWS_ 0 0 0 L1ME1_dup16806|chr9:100199621-100200814:-|1.8536988505861105|0.0116090864024259|7.32|150.0|4|1|sense L1ME1_dup16806|chr9:100199621-100200814:-|1.8536988505861105|0.0116090864024259|7.32|150.0|4|1|sense L1ME1_dup16806|chr9:100199621-100200814:-|1.8536988505861105|0.0116090864024259|7.32|150.0|4|1|sense MSMS UPN48_class_I_Rep_1 5 554.7799072265625 2 554.776742 1107.53893 NaN NaN NaN NaN NaN NaN NaN 54.467 1 57.982 57.482 58.482 3.5143 0 0 0 0.381 1 11535 11535 5.2307 0.47466 1 58529 12252 36956 36975 67345 67345 -0.010536420684275072 YVPHLVRF 8 Unmodified _YVPHLVRF_ 0 0 0 REV__HAL1_dup820|chr1:107605929-107606658:-|1.2783448611050017|0.0724991377339818|4.14|151.0|19|2|sense REV__HAL1_dup820|chr1:107605929-107606658:-|1.2783448611050017|0.0724991377339818|4.14|151.0|19|2|sense MSMS UPN48_class_I_Rep_3 7 515.794921875 2 515.795269 1029.57599 NaN NaN NaN NaN NaN NaN NaN 42.067 1 45.708 45.208 46.208 3.6415 0 0 0 0.40738 1 7667 7667 0.79363 0 1 + 58530 23436 36957 36976 67346 67346 0.062380742679806644 YVPIFKPV 8 Unmodified _YVPIFKPV_ 0 0 0 L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|191|2|anti-sense;L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|102|2|anti-sense;L1PB1_dup12306|chr19:21325047-21326645:+|3.861205200032919|0.14040204723854|4.78|151.0|80|2|anti-sense L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|191|2|anti-sense L1PB2_dup124|chr1:178012708-178016848:-|1.5834802420137677|0.428236212086507|1.89|143.0|191|2|anti-sense MSMS UPN48_class_I_Rep_2 6 481.8350524902344 2 481.789121 961.56369 NaN NaN NaN NaN NaN NaN NaN 112.63 1 116.29 115.79 116.79 3.6648 0 0 0 0.40604 1 26845 26845 2.5775 0 1 58531 15028 36958 36977 67347 67347 0.08137037804942793 YVPINKTK 8 Unmodified _YVPINKTK_ 0 0 0 REV__ENST00000466165.1_1_2:179312230-179315757:-|nuORF REV__ENST00000466165.1_1_2:179312230-179315757:-|nuORF MSMS UPN47_class_I_Rep_2 3 481.78704833984375 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 114 1 117.51 117.01 118.01 3.5109 0 0 0 0.40738 1 27744 27744 0.79363 0 1 + 58532 20698 36959 36978 67348 67348 0.07734948311235712 YVPINKTK 8 Unmodified _YVPINKTK_ 0 0 0 REV__ENST00000466165.1_1_2:179312230-179315757:-|nuORF REV__ENST00000466165.1_1_2:179312230-179315757:-|nuORF MSMS UPN47_class_I_Rep_3 4 482.2252197265625 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 20.09 1 23.442 22.942 23.942 3.3514 0 0 0 0.40738 1 2006 2006 0.79363 0 1 + 58533 20698 36959 36978 67349 67349 0.07734948311235712 YVPINKTK 8 Unmodified _YVPINKTK_ 0 0 0 REV__ENST00000466165.1_1_2:179312230-179315757:-|nuORF REV__ENST00000466165.1_1_2:179312230-179315757:-|nuORF MSMS UPN48_class_I_Rep_1 5 481.787109375 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 113.57 1 117.2 116.7 117.7 3.6314 0 0 0 0.40738 1 27592 27592 0.79363 0 1 + 58534 20698 36959 36978 67350 67350 0.07734948311235712 YVPKAFRAK 9 Unmodified _YVPKAFRAK_ 0 0 0 REV__ENST00000507353.1_1_5:118861592-118865690:+|nuORF REV__ENST00000507353.1_1_5:118861592-118865690:+|nuORF MULTI-SECPEP UPN46_class_I_Rep_3 1 539.7632446289062 2 540.321651 1078.62875 0.078061 4.2178E-05 0.18601 0.00010051 0.26407 0.00014269 540.3214698859679 28.878 0.03924 28.878 28.852 28.891 0 6 2 3 0 0 0 0.12462 1 4493 4493 1.8442 0.19162 1 163240 + 58535 19072 36960 36979 67351 67351 0.09258032330785682 YVPKNLHL 8 Unmodified _YVPKNLHL_ 0 0 0 L1MCa_dup4001|chr9:92689844-92691051:-|1.3765418128642712|0.011571136648628|6.89|151.0|36|3|sense L1MCa_dup4001|chr9:92689844-92691051:-|1.3765418128642712|0.011571136648628|6.89|151.0|36|3|sense L1MCa_dup4001|chr9:92689844-92691051:-|1.3765418128642712|0.011571136648628|6.89|151.0|36|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 492.2873229980469 2 492.287277 982.560001 0.21435 0.00010552 0.027282 1.3431E-05 0.24164 0.00011895 492.28710630526126 71.455 0.094055 74.673 74.593 74.687 3.2188 12 9 2 0 0 0 0.82752 1 17534 17534 2.5775 0 1 33063 58536 11802 36961 36980 67352 67352 0.06802368031083006 YVPLFIYPV 9 Unmodified _YVPLFIYPV_ 0 0 0 L1PA7_dup9236|chr10:48347404-48348881:-|1.8249835921942203|0.0346041472823711|5.72|151.0|66|2|anti-sense L1PA7_dup9236|chr10:48347404-48348881:-|1.8249835921942203|0.0346041472823711|5.72|151.0|66|2|anti-sense L1PA7_dup9236|chr10:48347404-48348881:-|1.8249835921942203|0.0346041472823711|5.72|151.0|66|2|anti-sense MSMS UPN48_class_I_Rep_1 5 555.8133544921875 2 555.815336 1109.61612 NaN NaN NaN NaN NaN NaN NaN 65.244 1 68.698 68.198 69.198 3.4541 0 0 0 0.39326 1 14830 14830 2.3027 0 1 58537 14911 36962 36981 67353 67353 0.06569576147876433 YVPLLWLQL 9 Unmodified _YVPLLWLQL_ 0 0 0 MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|59|2|anti-sense MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|59|2|anti-sense MER11A_dup492|chr8:52687913-52688935:+|1.7293398648578542|0.0976513830540228|4.15|151.0|59|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 573.2799072265625 2 572.841885 1143.66922 0.35068 0.00020089 -2.6637 -0.0015259 -2.3131 -0.001325 573.341604736945 72.235 0.10126 75.615 75.546 75.647 3.3799 8 6 2 0 0 0 0.12281 1 17661 17661 4.3292 0 1 52019 58538 15783 36963 36982 67354 67354 0.10312953930565527 YVPLNIYTY 9 Unmodified _YVPLNIYTY_ 0 0 0 L1MA1_dup4181|chr22:47184258-47187042:+|2.682896686929209|0.2199511109407242|3.61|151.0|36|1|sense L1MA1_dup4181|chr22:47184258-47187042:+|2.682896686929209|0.2199511109407242|3.61|151.0|36|1|sense L1MA1_dup4181|chr22:47184258-47187042:+|2.682896686929209|0.2199511109407242|3.61|151.0|36|1|sense MSMS UPN47_class_I_Rep_1 2 573.2794189453125 2 573.297507 1144.58046 NaN NaN NaN NaN NaN NaN NaN 71.952 1 75.327 74.827 75.827 3.3751 0 0 0 0.34056 1 17575 17575 8.5933 0.68312 1 58539 9303 36964 36983 67355 67355 0.013954939002587707 YVPLPWPYVA 10 Unmodified _YVPLPWPYVA_ 0 0 0 REV__ENSG00000104885|ENST00000398665|DOT1L REV__ENSG00000104885|ENST00000398665|DOT1L MSMS UPN48_class_I_Rep_2 6 602.8216552734375 2 602.823692 1203.63283 NaN NaN NaN NaN NaN NaN NaN 48.519 1 52.236 51.736 52.736 3.7175 0 0 0 0.53105 1 9703 9703 1.8442 0 1 + 58540 18271 36965 36984 67356 67356 0.039160770338412476 YVPLVYMSAF 10 Unmodified _YVPLVYMSAF_ 0 0 0 L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|91|3|anti-sense L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|91|3|anti-sense L1MB2_dup1468|chr3:87873656-87875168:+|3.5425274772992448|0.0112553190235685|8.3|136.0|91|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 595.30126953125 2 595.301736 1188.58892 0.513 0.00030539 -0.14541 -8.6565E-05 0.36758 0.00021882 595.3015365994995 65.48 0.77036 68.959 68.526 69.296 3.4792 93 54 2 0 0 0 0.51565 1 14846 14846 10.074 0 1 291630 58541 10214 36966 36985 67357 67357 0.0021672454518011364 YVPSGKTIYF 10 Unmodified _YVPSGKTIYF_ 0 0 0 ENST00000515140.1_3_4:68340585-68358532:-|nuORF ENST00000515140.1_3_4:68340585-68358532:-|nuORF ENST00000515140.1_3_4:68340585-68358532:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 587.81103515625 2 587.810782 1173.60701 0.45066 0.0002649 0.057729 3.3934E-05 0.50839 0.00029883 587.8106283746188 72.585 0.31058 76.059 75.818 76.128 3.4732 44 24 3 0 0 0 0.47413 1 17008 17008 13.906 0 1 290350 58542 7201 36967 36986 67358 67358 0.027151827915758986 YVPTSQIKI 9 Unmodified _YVPTSQIKI_ 0 0 0 L1ME3_dup4106|chr7:149565665-149566598:-|1.048068550495648|0.2165368188385253|2.28|151.0|32|1|anti-sense L1ME3_dup4106|chr7:149565665-149566598:-|1.048068550495648|0.2165368188385253|2.28|151.0|32|1|anti-sense L1ME3_dup4106|chr7:149565665-149566598:-|1.048068550495648|0.2165368188385253|2.28|151.0|32|1|anti-sense MSMS UPN48_class_I_Rep_3 7 524.8055419921875 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 59.415 1 62.938 62.438 63.438 3.5231 0 0 0 0.36505 1 12965 12965 7.2892 0 1 58543 12594 36968 36987 67359 67359 0.07455200137110296 YVQEFIPFF 9 Unmodified _YVQEFIPFF_ 0 0 0 L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|146|2|anti-sense L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|146|2|anti-sense L1PA7_dup8926|chrY:13266073-13269552:-|3.5689016438022025|0.1349004511576392|4.73|87.0|146|2|anti-sense MSMS UPN48_class_I_Rep_3 7 595.3018188476562 2 595.30005 1188.58555 NaN NaN NaN NaN NaN NaN NaN 65.201 1 68.708 68.208 69.208 3.5077 0 0 0 0.29868 1 14716 14716 10.824 0.75 1 58544 14907 36969 36988 67360 67360 -0.0012020223716717737 YVQESKPF 8 Unmodified _YVQESKPF_ 0 0 0 REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF REV__ENST00000574735.1_1_17:5009121-5012368:-|nuORF MSMS UPN46_class_I_Rep_3 1 499.3700256347656 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 92.663 1 92.663 92.163 93.163 0 0 0 0 0.40746 1 22433 22433 0.69038 0 1 + 58545 20240 36970 36989 67361 67361 -0.006739213394212129 YVQFYKKR 8 Unmodified _YVQFYKKR_ 0 0 0 L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|131|1|anti-sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|131|1|anti-sense L1MD2_dup3644|chr6:73036413-73040006:-|1.0043990275583294|0.0154628319928681|6.02|146.0|131|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 566.3194580078125 2 566.319109 1130.62366 0.39018 0.00022097 0.23406 0.00013255 0.62425 0.00035352 566.3190120592024 58.365 0.42517 61.888 61.672 62.097 3.5231 39 28 2 0 0 0 0.82752 1 12663 12663 5.2307 1.2863 1 98967 58546 11993 36971 36990 67362 67362 0.06357728468174173 YVQGIDLY 8 Unmodified _YVQGIDLY_ 0 0 0 REV__ENSG00000006555|ENST00000371276|TTC22 REV__ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS UPN47_class_I_Rep_3 4 485.7476501464844 2 485.74765 969.480748 0.13795 6.701E-05 -0.49865 -0.00024222 -0.3607 -0.00017521 485.74739672713065 66.226 0.34403 69.411 69.146 69.49 3.1853 36 21 2 0 0 0 0.82752 1 15930 15930 10.824 0 1 61248 + 58547 17536 36972 36991 67363 67363 -0.005213237137240867 YVQHAIPL 8 Unmodified _YVQHAIPL_ 0 0 0 nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49 nc|nan|Q9BVC5-2|C2orf49 nc|nan|Q9BVC5-2|C2orf49 MSMS UPN48_class_I_Rep_1 5 470.7664794921875 2 470.766178 939.517802 NaN NaN NaN NaN NaN NaN NaN 52.294 1 55.817 55.317 56.317 3.5227 0 0 0 0.40604 1 10863 10863 2.5775 0 1 58548 16869 36973 36992 67364 67364 0.04562392622710831 YVQHGKFL 8 Unmodified _YVQHGKFL_ 0 0 0 REV__MLT1A0_dup16055|chr13:51720617-51720937:-|1.0296686266490696|0.0499708419869462|4.36|151.0|2|1|sense REV__MLT1A0_dup16055|chr13:51720617-51720937:-|1.0296686266490696|0.0499708419869462|4.36|151.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_1 5 496.76373291015625 2 496.271627 990.528701 0.17154 8.5129E-05 0.2054 0.00010193 0.37694 0.00018706 496.2715611367186 49.432 0.65964 52.957 52.401 53.061 3.5246 64 48 2 0 0 0 0.82752 2 9957 9901;9957 10.183 9.3474 1 140950 + 58549 31590 36974 36993 67365;67366 67366 0.03305794997004341 YVQHGKFL 8 Unmodified _YVQHGKFL_ 0 0 0 REV__MLT1A0_dup16055|chr13:51720617-51720937:-|1.0296686266490696|0.0499708419869462|4.36|151.0|2|1|sense REV__MLT1A0_dup16055|chr13:51720617-51720937:-|1.0296686266490696|0.0499708419869462|4.36|151.0|2|1|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 496.271627 990.528701 0.20658 0.00010252 0.076589 3.8009E-05 0.28317 0.00014053 496.2715542707621 48.981 0.51814 52.698 52.421 52.939 3.7175 -0.12903 -8.0165E-05 NaN 10.183 54 33 2 NaN NaN NaN NaN 0 NaN NaN 0 155310 + 58550 31590 36974 36993 0.03305794997004341 YVQKGLNQL 9 Unmodified _YVQKGLNQL_ 0 0 0 REV__MER21B_dup1778|chr11:68473015-68473791:+|2.905873525923007|0.1053545338767878|4.79|151.0|48|3|anti-sense REV__MER21B_dup1778|chr11:68473015-68473791:+|2.905873525923007|0.1053545338767878|4.79|151.0|48|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 531.8003540039062 2 531.800749 1061.58694 0.45727 0.00024318 -0.61258 -0.00032577 -0.15531 -8.2594E-05 531.8005995172512 58.83 0.91561 62.317 61.863 62.778 3.487 156 58 4 0 0 0 0.25207 1 12988 12988 16.942 0 1 964770 + 58551 31200 36975 36994 67367 67367 0.058614318515992636 YVQKGLNQL 9 Unmodified _YVQKGLNQL_ 0 0 0 REV__MER21B_dup1778|chr11:68473015-68473791:+|2.905873525923007|0.1053545338767878|4.79|151.0|48|3|anti-sense REV__MER21B_dup1778|chr11:68473015-68473791:+|2.905873525923007|0.1053545338767878|4.79|151.0|48|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 531.8009643554688 2 531.800749 1061.58694 0.51772 0.00027532 -0.56611 -0.00030106 -0.048387 -2.5732E-05 531.8006017759162 58.788 0.97144 62.287 61.83 62.801 3.4987 154 59 4 0 0 0 0.25207 1 12934 12934 16.942 0 1 1732200 + 58552 31200 36975 36994 67368 67368 0.058614318515992636 YVQRCHCW 8 Unmodified _YVQRCHCW_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS UPN47_class_I_Rep_2 3 547.7366333007812 2 547.736571 1093.45859 0.025166 1.3784E-05 -0.68899 -0.00037739 -0.66383 -0.0003636 547.7362413156786 20.359 0.99175 23.767 23.318 24.31 3.4074 148 100 2 0 0 0 0.82752 1 2002 2002 0.79363 0 1 80645 + 58553 19882 36976 36995 67369 67369 -0.08440149934790497 YVQRCHCW 8 Unmodified _YVQRCHCW_ 0 0 0 REV__nc|ENSG00000160285|P48449-2|LSS REV__nc|ENSG00000160285|P48449-2|LSS MSMS UPN47_class_I_Rep_2 3 547.7366943359375 2 547.736571 1093.45859 NaN NaN NaN NaN NaN NaN NaN 18.153 1 21.543 21.043 22.043 3.3898 0 0 0 0.40738 1 1485 1485 0.79363 0 1 + 58554 19882 36976 36995 67370 67370 -0.08440149934790497 YVQSDLLQY 9 Unmodified _YVQSDLLQY_ 0 0 0 L1ME4b_dup16877|chr14:102169895-102170623:-|1.07404332991525|0.0404729572694602|4.73|151.0|23|3|sense L1ME4b_dup16877|chr14:102169895-102170623:-|1.07404332991525|0.0404729572694602|4.73|151.0|23|3|sense L1ME4b_dup16877|chr14:102169895-102170623:-|1.07404332991525|0.0404729572694602|4.73|151.0|23|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 564.7820434570312 2 564.782222 1127.54989 0.43104 0.00024344 -0.33309 -0.00018813 0.097943 5.5317E-05 564.7818555637123 64.302 0.49258 67.476 67.166 67.658 3.1741 57 33 2 0 0 0 0.26948 1 15386 15386 15.847 1.9411 1 112490 58555 12896 36977 36996 67371 67371 -0.008782844847928573 YVQVKINV 8 Unmodified _YVQVKINV_ 0 0 0 REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|182|3|anti-sense REV__L1MA4A_dup340|chr1:180382140-180385230:+|1.4266196668591822|0.0314972485547054|5.5|150.0|182|3|anti-sense MSMS UPN47_class_I_Rep_2 3 481.7402648925781 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 28.808 1 32.307 31.807 32.807 3.4986 0 0 0 0.40746 1 4523 4523 0.69038 0 1 + 58556 25284 36978 36997 67372 67372 0.07734948311224343 YVQWPSSHQR 10 Unmodified _YVQWPSSHQR_ 0 0 0 REV__nc|ENSG00000164362|O14746-4|TERT REV__nc|ENSG00000164362|O14746-4|TERT MULTI-MSMS UPN47_class_I_Rep_1 2 645.308837890625 2 644.315086 1286.61562 0.48794 0.00031439 -3.4159 -0.0022009 -2.9279 -0.0018865 644.314313979662 60.772 0.46716 64.154 63.801 64.268 3.3815 82 44 3 0 0 0 0.52083 1 14186 14186 9.3831 1.2276 1 144530 + 58557 20060 36979 36998 67373 67373 -0.016224505192667493 YVQYFYAHQ 9 Unmodified _YVQYFYAHQ_ 0 0 0 REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|28|2|sense REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|28|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 406.68792724609375 3 406.857463 1217.55056 -0.25534 -0.00010389 -2.1831 -0.0008882 -2.4384 -0.00099208 407.18943891098047 27.353 0.32983 27.353 27.166 27.496 0 36 24 2 0 0 0 0.12516 1 4040 4040 1.0715 0.10919 1 27363 + 58558 26080 36980 36999 67374 67374 -0.04951445045116998 YVRACMKYGF 10 Unmodified _YVRACMKYGF_ 0 0 0 REV__ENSG00000131323.16,TRAF3,chr14,+,I9.1,102886270,102889559|27|5.82|2|intron REV__ENSG00000131323.16,TRAF3,chr14,+,I9.1,102886270,102889559|27|5.82|2|intron MSMS UPN48_class_I_Rep_3 7 619.2950439453125 2 619.296462 1236.57837 NaN NaN NaN NaN NaN NaN NaN 55.232 1 58.787 58.287 59.287 3.5554 0 0 0 0.53105 1 11688 11688 3.2813 0.54611 1 + 58559 18972 36981 37000 67375 67375 -0.03045581380888507 YVRKHKHL 8 Unmodified _YVRKHKHL_ 0 0 0 Tigger3c_dup1789|chr12:116207313-116207524:+|1.1137266409233306|0.0029088187754454|8.58|151.0|1|1|sense Tigger3c_dup1789|chr12:116207313-116207524:+|1.1137266409233306|0.0029088187754454|8.58|151.0|1|1|sense Tigger3c_dup1789|chr12:116207313-116207524:+|1.1137266409233306|0.0029088187754454|8.58|151.0|1|1|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 540.3213500976562 2 540.824892 1079.63523 -0.035075 -1.8969E-05 -3.5532 -0.0019217 -3.5883 -0.0019407 540.8231428999585 23.707 0.051411 23.707 23.689 23.74 0 5 4 2 0 0 0 0.72333 1 3017 3017 2.3027 0.4585 1 84535 58560 33413 36982 37001 67376 67376 0.0985997028217298 YVRKLKERQR 10 Unmodified _YVRKLKERQR_ 0 0 0 nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B MSMS UPN46_class_I_Rep_3 1 459.2801208496094 3 459.280877 1374.8208 NaN NaN NaN NaN NaN NaN NaN 119.75 1 119.75 119.25 120.25 0 0 0 0 0.53105 1 29777 29777 0.69767 0.19171 1 58561 4605 36983 37002 67377 67377 0.14838328010955593 YVRKRIIKKML 11 Unmodified _YVRKRIIKKML_ 0 0 0 REV__L1M8_dup371|chr3:197094458-197095128:-|1.0851384276886753|0.0409942264972014|4.73|151.0|8|1|sense REV__L1M8_dup371|chr3:197094458-197095128:-|1.0851384276886753|0.0409942264972014|4.73|151.0|8|1|sense MSMS UPN47_class_I_Rep_1 2 483.3160705566406 3 483.314641 1446.92209 NaN NaN NaN NaN NaN NaN NaN 100.29 1 104.09 103.59 104.59 3.7942 0 0 0 0.38417 1 24797 24797 0.08335 0 1 + 58562 24745 36984 37003 67378 67378 0.2165106338932219 YVRKWQRL 8 Unmodified _YVRKWQRL_ 0 0 0 REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23 REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23 MSMS UPN48_class_I_Rep_1 5 574.83984375 2 574.838 1147.66145 NaN NaN NaN NaN NaN NaN NaN 113.85 1 117.48 116.98 117.98 3.6314 0 0 0 0.40746 1 27667 27667 0.69038 0 1 + 58563 21432 36985 37004 67379 67379 0.09352239453664879 YVRLQIKY 8 Unmodified _YVRLQIKY_ 0 0 0 L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.8218994140625 2 541.821484 1081.62842 0.39501 0.00021402 -0.075672 -4.1001E-05 0.31934 0.00017302 541.8213553482306 45.426 1.4497 48.942 48.534 49.983 3.5162 316 101 4 0 0 0 0.82752 5 9051 8652;8890;8930;9010;9051 34.102 5.6156 1 4108100 58564 9055 36986 37005 67380;67381;67382;67383;67384 67384 0.09086612610940392 YVRLQIKY 8 Unmodified _YVRLQIKY_ 0 0 0 L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 541.8233032226562 2 541.821484 1081.62842 0.38855 0.00021052 -0.071212 -3.8584E-05 0.31733 0.00017194 541.821456535843 46.584 0.3485 50.103 49.986 50.335 3.5192 29 23 2 0 0 0 0.82752 1 9096 9096 12.532 3.9383 1 144380 58565 9055 36986 37005 67385 67385 0.09086612610940392 YVRLQIKY 8 Unmodified _YVRLQIKY_ 0 0 0 L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_2 6 541.821533203125 2 541.821484 1081.62842 0.39705 0.00021513 -0.13478 -7.3027E-05 0.26227 0.0001421 541.8213342478908 45.162 1.6703 48.92 48.395 50.065 3.7579 370 122 4 0 0 0 0.82752 5 8564 8564;8603;8827;8910;8990 48.346 4.4876 1 3710100 58566 9055 36986 37005 67386;67387;67388;67389;67390 67386 0.09086612610940392 YVRLQIKY 8 Unmodified _YVRLQIKY_ 0 0 0 L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense L1M4c_dup2530|chr11:67188811-67189449:+|4.416919050015389|0.0727076170601107|5.92|151.0|14|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 541.8209228515625 2 541.821484 1081.62842 0.44472 0.00024096 -0.14762 -7.9981E-05 0.29711 0.00016098 541.8213335547063 45.388 1.8061 49.025 48.468 50.274 3.6369 332 121 4 0 0 0 0.82752 6 8553 8553;8595;8788;8825;8864;8954 48.346 5.302 1 4054400 58567 9055 36986 37005 67391;67392;67393;67394;67395;67396 67391 0.09086612610940392 YVRLSVQW 8 Unmodified _YVRLSVQW_ 0 0 0 REV__nc|ENSG00000196364|A6NIE9|PRSS29P REV__nc|ENSG00000196364|A6NIE9|PRSS29P MSMS UPN48_class_I_Rep_1 5 525.7904052734375 2 525.790184 1049.56581 NaN NaN NaN NaN NaN NaN NaN 31.474 1 35.008 34.508 35.508 3.5342 0 0 0 0.4044 1 4661 4661 4.756 0 1 + 58568 32089 36987 37006 67397 67397 0.04301466542779053 YVRPCGSCF 9 Unmodified _YVRPCGSCF_ 0 0 0 REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|111|1|anti-sense REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|111|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 516.2255859375 2 516.225505 1030.43646 0.24674 0.00012738 -0.34549 -0.00017835 -0.098746 -5.0975E-05 516.22548035649 46.704 1.1268 50.223 49.754 50.88 3.5192 204 70 4 0 0 0 0.15122 2 9174 9135;9174 25.399 25.399 1 2130000 + 58569 26549 36988 37007 67398;67399 67399 -0.07754374403202746 YVRPCGSCF 9 Unmodified _YVRPCGSCF_ 0 0 0 REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|111|1|anti-sense REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|111|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 516.2255859375 2 516.225505 1030.43646 0.2537 0.00013097 -0.3248 -0.00016767 -0.0711 -3.6704E-05 516.2254866804219 46.435 1.2879 50.185 49.704 50.992 3.7494 233 90 4 0 0 0 0.10817 3 9042 9042;9083;9120 32.305 25.399 1 1919000 + 58570 26549 36988 37007 67400;67401;67402 67400 -0.07754374403202746 YVRPCGSCF 9 Unmodified _YVRPCGSCF_ 0 0 0 REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|111|1|anti-sense REV__L1MC1_dup393|chr1:97403357-97405506:-|2.492264803044696|0.0166352153981161|7.23|151.0|111|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 516.2256469726562 2 516.225505 1030.43646 0.26926 0.000139 -0.29327 -0.0001514 -0.024012 -1.2396E-05 516.2254782195838 46.613 1.1394 50.25 49.8 50.939 3.6363 202 72 4 0 0 0 0.15122 2 9070 9070;9114 25.399 19.257 1 1912700 + 58571 26549 36988 37007 67403;67404 67403 -0.07754374403202746 YVRPLRHF 8 Unmodified _YVRPLRHF_ 0 0 0 REV__L1ME2_dup5762|chr7:102088658-102090076:-|3.493384176117206|0.0174356710191445|7.65|151.0|63|2|anti-sense REV__L1ME2_dup5762|chr7:102088658-102090076:-|3.493384176117206|0.0174356710191445|7.65|151.0|63|2|anti-sense MSMS UPN48_class_I_Rep_3 7 544.3104248046875 2 544.311618 1086.60868 NaN NaN NaN NaN NaN NaN NaN 49.158 1 52.787 52.287 53.287 3.6291 0 0 0 0.39624 1 9838 9838 9.3474 0 1 + 58572 27863 36989 37008 67405 67405 0.06884281390853175 YVRPQISLK 9 Unmodified _YVRPQISLK_ 0 0 0 L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|6|2|sense L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|6|2|sense L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_1 5 552.3328247070312 2 552.332216 1102.64988 0.50107 0.00027676 0.62974 0.00034783 1.1308 0.00062458 552.3321756768522 50.247 0.95264 53.772 53.364 54.317 3.5246 116 63 3 0 0 0 0.46434 1 10368 10368 4.3292 0 1 308590 58573 10150 36990 37009 67406 67406 0.10265997639658053 YVRPQISLK 9 Unmodified _YVRPQISLK_ 0 0 0 L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|6|2|sense L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|6|2|sense L1MA9_dup6455|chr6:156003414-156003880:-|1.1091814654747163|0.0152635043859568|6.18|146.0|6|2|sense MULTI-MSMS UPN48_class_I_Rep_3 7 552.33251953125 2 552.332216 1102.64988 0.28126 0.00015535 0.78783 0.00043514 1.0691 0.00059049 552.3322235081686 50.282 0.9868 53.903 53.358 54.345 3.621 111 61 3 0 0 0 0.33654 2 10230 10230;10251 11.64 1.5664 1 440720 58574 10150 36990 37009 67407;67408 67407 0.10265997639658053 YVRPRVFG 8 Unmodified _YVRPRVFG_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS UPN48_class_I_Rep_2 6 497.28363037109375 2 497.285069 992.555585 NaN NaN NaN NaN NaN NaN NaN 43.679 1 47.441 46.941 47.941 3.7617 0 0 0 0.40364 1 8237 8237 5.7604 0 1 58575 3289 36991 37010 67409 67409 0.05900903608187491 YVRRKNRG 8 Unmodified _YVRRKNRG_ 0 0 0 REV__ENST00000585547.5_1_19:38190780-38198855:-|nuORF REV__ENST00000585547.5_1_19:38190780-38198855:-|nuORF MSMS UPN48_class_I_Rep_3 7 524.8106689453125 2 524.809774 1047.60499 NaN NaN NaN NaN NaN NaN NaN 53.395 1 56.979 56.479 57.479 3.5836 0 0 0 0.40404 1 11125 11125 5.2307 0 1 + 58576 23140 36992 37011 67410 67410 0.08309611616982693 YVRRRRPI 8 Unmodified _YVRRRRPI_ 0 0 0 ENST00000529111.5_1_11:83344252-84634162:-|nuORF;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;nc|ENSG00000150672|Q15700-4|DLG2;ENSG00000150672|ENST00000376104|DLG2 ENST00000529111.5_1_11:83344252-84634162:-|nuORF ENST00000529111.5_1_11:83344252-84634162:-|nuORF MSMS UPN47_class_I_Rep_2 3 558.348388671875 2 558.349066 1114.68358 NaN NaN NaN NaN NaN NaN NaN 97.02 1 100.5 99.999 101 3.4791 0 0 0 0.40746 1 23828 23828 0.69038 0 1 58577 3567 36993 37012 67411 67411 0.1308246392206911 YVRTLYYY 8 Unmodified _YVRTLYYY_ 0 0 0 L1MC4a_dup8776|chr16:81952210-81953453:+|1.0319174586842903|0.1580183965732838|2.71|151.0|15|1|sense L1MC4a_dup8776|chr16:81952210-81953453:+|1.0319174586842903|0.1580183965732838|2.71|151.0|15|1|sense L1MC4a_dup8776|chr16:81952210-81953453:+|1.0319174586842903|0.1580183965732838|2.71|151.0|15|1|sense MSMS UPN47_class_I_Rep_3 4 570.8096923828125 2 570.78985 1139.56515 NaN NaN NaN NaN NaN NaN NaN 70.093 1 73.304 72.804 73.804 3.2113 0 0 0 0.4032 1 17127 17127 6.3541 1.5981 1 58578 11628 36994 37013 67412 67412 0.0009462710304433131 YVRVFIEGV 9 Unmodified _YVRVFIEGV_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS UPN47_class_I_Rep_1 2 541.30517578125 2 541.305667 1080.59678 -0.0059886 -3.2417E-06 -0.20838 -0.0001128 -0.21437 -0.00011604 541.3055053787635 38.822 0.52781 42.487 42.294 42.822 3.6652 42 32 2 0 0 0 0.46434 1 7492 7492 4.3292 0 1 66827 + 58579 19268 36995 37014 67413 67413 0.059706198569983826 YVRVFIEGV 9 Unmodified _YVRVFIEGV_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS UPN47_class_I_Rep_3 4 541.3048706054688 2 541.305667 1080.59678 -0.059732 -3.2333E-05 0.13584 7.3528E-05 0.076103 4.1195E-05 541.3056122586065 39.435 0.48367 42.673 42.505 42.989 3.2379 54 34 2 0 0 0 0.46434 1 7802 7802 4.3292 0 1 63669 + 58580 19268 36995 37014 67414 67414 0.059706198569983826 YVRVYCPLA 9 Unmodified _YVRVYCPLA_ 0 0 0 REV__L1M3_dup3273|chr9:37157503-37158019:+|1.955996766606945|0.0476159216026351|5.36|151.0|16|3|sense REV__L1M3_dup3273|chr9:37157503-37158019:+|1.955996766606945|0.0476159216026351|5.36|151.0|16|3|sense MSMS UPN48_class_I_Rep_1 5 542.2850341796875 2 542.28642 1082.55829 NaN NaN NaN NaN NaN NaN NaN 43.767 1 47.277 46.777 47.777 3.5103 0 0 0 0.34056 1 8252 8252 8.5933 0 1 + 58581 24298 36996 37015 67415 67415 0.020309909508114288 YVRYNNWI 8 Unmodified _YVRYNNWI_ 0 0 0 REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|93|1|anti-sense REV__HERVH-int_dup4562|chr12:29137315-29140351:-|1.8007475869488228|0.2324674366517507|2.95|149.0|93|1|anti-sense MSMS UPN48_class_I_Rep_3 7 564.2847290039062 2 564.285266 1126.55598 NaN NaN NaN NaN NaN NaN NaN 21.239 1 24.905 24.405 25.405 3.6667 0 0 0 0.40746 1 1960 1960 0.69038 0 1 + 58582 23679 36997 37016 67416 67416 -0.00223721462634785 YVRYRLPL 8 Unmodified _YVRYRLPL_ 0 0 0 ENSG00000102962|ENST00000219235|CCL22 ENSG00000102962|ENST00000219235|CCL22 ENSG00000102962|ENST00000219235|CCL22 MSMS UPN46_class_I_Rep_3 1 540.3216552734375 2 540.321651 1078.62875 NaN NaN NaN NaN NaN NaN NaN 74.28 1 74.28 73.78 74.78 0 0 0 0 0.40738 1 17230 17230 0.79363 0 1 58583 1635 36998 37017 67417 67417 0.09258032330808419 YVSELKRTI 9 Unmodified _YVSELKRTI_ 0 0 0 ENST00000429404.1_1_10:60896824-60897136:-|nuORF;ENSG00000175104|ENST00000526995|TRAF6 ENST00000429404.1_1_10:60896824-60897136:-|nuORF ENST00000429404.1_1_10:60896824-60897136:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 554.8212890625 2 554.821681 1107.62881 0.53342 0.00029595 0.23804 0.00013207 0.77145 0.00042802 554.8218094273309 54.813 0.61082 58.321 57.947 58.558 3.5082 83 43 2 0 0 0 0.28552 2 11566 11549;11566 14.838 1.7958 1 282900 58584 4708 36999 37018 67418;67419 67419 0.07929987540137517 YVSELKRTI 9 Unmodified _YVSELKRTI_ 0 0 0 ENST00000429404.1_1_10:60896824-60897136:-|nuORF;ENSG00000175104|ENST00000526995|TRAF6 ENST00000429404.1_1_10:60896824-60897136:-|nuORF ENST00000429404.1_1_10:60896824-60897136:-|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 554.82177734375 2 554.821681 1107.62881 0.6039 0.00033506 0.13685 7.5925E-05 0.74075 0.00041098 554.8217192025221 54.729 0.69914 58.311 57.932 58.631 3.5817 81 44 2 0 0 0 0.28552 1 11506 11506 14.838 0.93222 1 226930 58585 4708 36999 37018 67420 67420 0.07929987540137517 YVSELVTAAY 10 Unmodified _YVSELVTAAY_ 0 0 0 REV__nc|ENSG00000154678|Q14123-2|PDE1C REV__nc|ENSG00000154678|Q14123-2|PDE1C MSMS UPN47_class_I_Rep_3 4 558.2832641601562 2 558.284597 1114.55464 NaN NaN NaN NaN NaN NaN NaN 51.055 1 54.272 53.772 54.772 3.2163 0 0 0 0.53105 1 11330 11330 6.2058 0.47393 1 + 58586 19744 37000 37019 67421 67421 0.0019459965797068435 YVSKLQVQF 9 Unmodified _YVSKLQVQF_ 0 0 0 REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|82|1|anti-sense REV__L1M1_dup7067|chr11:48114519-48116871:+|2.883331265553013|0.1586755723760175|4.18|151.0|82|1|anti-sense MSMS UPN48_class_I_Rep_1 5 556.31005859375 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 67.213 1 70.664 70.164 71.164 3.4516 0 0 0 0.37692 1 15429 15429 6.2058 0.47393 1 + 58587 24126 37001 37020 67422 67422 0.0564660251143323 YVSLGYFL 8 Unmodified _YVSLGYFL_ 0 0 0 REV__L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|92|1|anti-sense REV__L1PA15_dup465|chr1:213138350-213140894:-|1.294600355301106|0.0127430483436381|6.67|151.0|92|1|anti-sense MSMS UPN47_class_I_Rep_3 4 481.3365783691406 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 111.3 1 114.82 114.32 115.32 3.5207 0 0 0 0.40738 1 27317 27317 0.79363 0 1 + 58588 25139 37002 37021 67423 67423 0.013841681542771767 YVSNIVVRL 9 Unmodified _YVSNIVVRL_ 0 0 0 REV__LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|12|3|sense REV__LTR3B__dup77|chr5:10366469-10366962:-|1.0059614920404427|0.0152197057247051|6.05|151.0|12|3|sense MSMS UPN46_class_I_Rep_3 1 531.816162109375 2 531.818941 1061.62333 NaN NaN NaN NaN NaN NaN NaN 81.332 1 81.332 80.832 81.832 0 0 0 0 0.39598 1 19202 19202 1.6526 0 1 + 58589 30913 37003 37022 67424 67424 0.09498308748334239 YVSNIYRY 8 Unmodified _YVSNIYRY_ 0 0 0 ENSG00000185972|ENST00000335119|CCIN ENSG00000185972|ENST00000335119|CCIN ENSG00000185972|ENST00000335119|CCIN MULTI-SECPEP UPN48_class_I_Rep_3 7 539.300537109375 2 539.271824 1076.5291 0.47871 0.00025816 0.053026 2.8595E-05 0.53174 0.00028675 539.2716871302272 44.852 0.4515 48.489 48.254 48.705 3.6371 38 29 2 0 0 0 0.72333 1 8492 8492 9.3474 0 1 107060 58590 5134 37004 37023 67425 67425 -0.006108300738105754 YVSSLDLISS 10 Unmodified _YVSSLDLISS_ 0 0 0 ENST00000578201.5_2_17:73662872-73662980:-|nuORF ENST00000578201.5_2_17:73662872-73662980:-|nuORF ENST00000578201.5_2_17:73662872-73662980:-|nuORF MSMS UPN48_class_I_Rep_3 7 542.28466796875 2 542.282054 1082.54956 NaN NaN NaN NaN NaN NaN NaN 43.842 1 47.481 46.981 47.981 3.6385 0 0 0 0.53105 1 8208 8208 10.824 2.9138 1 58591 7540 37005 37024 67426 67426 0.01158295795335107 YVSSQAIFLF 10 Unmodified _YVSSQAIFLF_ 0 0 0 ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 587.8109741210938 2 587.810782 1173.60701 0.45066 0.0002649 0.057729 3.3934E-05 0.50839 0.00029883 587.8106283746188 72.585 0.31058 76.059 75.818 76.128 3.4732 44 24 3 0 0 0 0.31342 1 17050 17050 29.082 0 1 290350 58592 6106 37006 37025 67427 67427 0.027151827915531612 YVSSQAIFLF 10 Unmodified _YVSSQAIFLF_ 0 0 0 ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 587.8106689453125 2 587.810782 1173.60701 0.45016 0.00026461 0.12835 7.5446E-05 0.57851 0.00034005 587.8107909917792 72.805 0.4408 76.278 76.105 76.545 3.4732 62 32 3 0 0 0 0.21655 3 17109 17109;17153;17159 41.956 3.78 1 166970 58593 6106 37006 37025 67428;67429;67430 67428 0.027151827915531612 YVSSQAIFLF 10 Unmodified _YVSSQAIFLF_ 0 0 0 ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 587.8110961914062 2 587.810782 1173.60701 0.47446 0.00027889 0.14832 8.7182E-05 0.62278 0.00036608 587.8107305521256 72.564 0.58025 76.129 75.761 76.341 3.5645 112 51 3 0 0 0 0.31342 2 16982 16942;16982 29.082 0 1 286400 58594 6106 37006 37025 67431;67432 67432 0.027151827915531612 YVSSQAIFLF 10 Unmodified _YVSSQAIFLF_ 0 0 0 ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 587.8109130859375 2 587.810782 1173.60701 0.55974 0.00032902 0.10471 6.155E-05 0.66445 0.00039057 587.8107047164062 72.561 0.45559 76.098 75.714 76.17 3.5373 95 41 3 0 0 0 0.36464 2 16867 16867;16905 22.736 0 1 241230 58595 6106 37006 37025 67433;67434 67433 0.027151827915531612 YVSSQAIFLF 10 Unmodified _YVSSQAIFLF_ 0 0 0 ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF ENST00000309971.8_1_9:131267149-131271258:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 587.8115234375 2 587.810782 1173.60701 0.55861 0.00032836 -0.01898 -1.1157E-05 0.53963 0.0003172 587.810566144996 72.666 0.36286 76.203 76.17 76.533 3.5373 42 28 2 0 0 0 0.43106 1 16945 16945 17.113 0 1 219910 58596 6106 37006 37025 67435 67435 0.027151827915531612 YVSSSPFAV 9 Unmodified _YVSSSPFAV_ 0 0 0 REV__ENSG00000112118|ENST00000596288|MCM3 REV__ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN48_class_I_Rep_1 5 478.73980712890625 2 478.739825 955.465098 0.18476 8.8454E-05 0.040411 1.9346E-05 0.22518 0.0001078 478.7397974851511 66.996 0.59949 70.448 70.21 70.809 3.4516 56 38 2 0 0 0 0.41259 3 15396 15308;15396;15438 7.2892 0 1 113810 + 58597 18475 37007 37026 67436;67437;67438 67437 -0.01441610230756396 YVSSSPFAV 9 Unmodified _YVSSSPFAV_ 0 0 0 REV__ENSG00000112118|ENST00000596288|MCM3 REV__ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN48_class_I_Rep_2 6 478.7397766113281 2 478.739825 955.465098 0.24817 0.00011881 0.035137 1.6822E-05 0.2833 0.00013563 478.7397966561509 66.896 0.46417 70.392 70.174 70.638 3.4964 38 27 2 0 0 0 0.41259 2 15277 15277;15370 7.2892 0 1 96407 + 58598 18475 37007 37026 67439;67440 67439 -0.01441610230756396 YVSSSPFAV 9 Unmodified _YVSSSPFAV_ 0 0 0 REV__ENSG00000112118|ENST00000596288|MCM3 REV__ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS UPN48_class_I_Rep_3 7 478.73980712890625 2 478.739825 955.465098 0.26621 0.00012745 -0.17143 -8.2069E-05 0.094786 4.5378E-05 478.73974412594254 66.795 0.53735 70.303 70.031 70.569 3.5077 46 32 2 0 0 0 0.41259 1 15270 15270 7.2892 0 1 116620 + 58599 18475 37007 37026 67441 67441 -0.01441610230756396 YVSSWLYVF 9 Unmodified _YVSSWLYVF_ 0 0 0 REV__L1MB3_dup12147|chr12:120880801-120881188:+|1.3994054975594994|0.0070384279328059|7.64|151.0|19|1|anti-sense REV__L1MB3_dup12147|chr12:120880801-120881188:+|1.3994054975594994|0.0070384279328059|7.64|151.0|19|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 582.7939453125 2 582.292225 1162.5699 0.47473 0.00027643 -0.17643 -0.00010273 0.2983 0.0001737 582.2920081131813 77.183 0.62675 80.795 80.511 81.137 3.6116 106 60 2 0 0 0 0.46434 2 18192 18178;18192 4.3292 0 1 170300 + 58600 25806 37008 37027 67442;67443 67443 -0.00488488754217542 YVSVDSPIL 9 Unmodified _YVSVDSPIL_ 0 0 0 L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|69|1|anti-sense L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|69|1|anti-sense L1MB5_dup6872|chr13:108291979-108293686:-|2.647573656952073|0.0742268241652524|5.16|151.0|69|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 496.7689208984375 2 496.768583 991.522613 0.15971 7.9337E-05 0.23546 0.00011697 0.39516 0.0001963 496.7685321330998 73.918 0.12746 77.304 77.228 77.356 3.3861 14 11 2 0 0 0 0.35081 1 18170 18170 10.824 0 1 47108 58601 10640 37009 37028 67444 67444 0.026512319748235313 YVSWRKLT 8 Unmodified _YVSWRKLT_ 0 0 0 REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|67|2|anti-sense REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|67|2|anti-sense MSMS UPN47_class_I_Rep_2 3 526.7525024414062 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 23.724 1 27.19 26.69 27.69 3.4655 0 0 0 0.40604 1 3031 3031 2.5775 0 1 + 58602 27958 37010 37029 67445 67445 0.05773753059793307 YVSWRKLT 8 Unmodified _YVSWRKLT_ 0 0 0 REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|67|2|anti-sense REV__L1ME3_dup4752|chr9:92621817-92622888:+|1.3264173547985338|0.2494516662910162|2.41|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_2 6 527.2787475585938 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 20.84 1 24.488 23.988 24.988 3.648 0 0 0 0.40746 1 1863 1863 0.69038 0 1 + 58603 27958 37010 37029 67446 67446 0.05773753059793307 YVTFHEKSI 9 Unmodified _YVTFHEKSI_ 0 0 0 REV__ENSG00000143952.20,VPS54,chr2,-,I9.1,63947491,63949036|91|6.4|2|intron REV__ENSG00000143952.20,VPS54,chr2,-,I9.1,63947491,63949036|91|6.4|2|intron MULTI-MSMS UPN48_class_I_Rep_1 5 562.2930908203125 2 562.292756 1122.57096 0.48118 0.00027057 -0.24965 -0.00014038 0.23153 0.00013019 562.292554582386 54.311 0.6582 57.826 57.543 58.201 3.5143 94 48 3 0 0 0 0.16559 1 11467 11467 24.021 4.7636 1 195540 + 58604 19469 37011 37030 67447 67447 0.014577256147049411 YVTFHEKSI 9 Unmodified _YVTFHEKSI_ 0 0 0 REV__ENSG00000143952.20,VPS54,chr2,-,I9.1,63947491,63949036|91|6.4|2|intron REV__ENSG00000143952.20,VPS54,chr2,-,I9.1,63947491,63949036|91|6.4|2|intron MULTI-MSMS UPN48_class_I_Rep_2 6 562.2926025390625 2 562.292756 1122.57096 0.58821 0.00033075 -0.2185 -0.00012286 0.36971 0.00020788 562.2924671559082 54.223 0.60343 57.804 57.575 58.178 3.5817 81 36 3 0 0 0 0.11683 2 11409 11409;11461 30.637 3.7529 1 190550 + 58605 19469 37011 37030 67448;67449 67448 0.014577256147049411 YVTFHEKSI 9 Unmodified _YVTFHEKSI_ 0 0 0 REV__ENSG00000143952.20,VPS54,chr2,-,I9.1,63947491,63949036|91|6.4|2|intron REV__ENSG00000143952.20,VPS54,chr2,-,I9.1,63947491,63949036|91|6.4|2|intron MULTI-MSMS UPN48_class_I_Rep_3 7 562.29296875 2 562.292756 1122.57096 0.28383 0.00015959 -0.2205 -0.00012398 0.063329 3.561E-05 562.2925678541592 54.254 0.5335 57.824 57.564 58.098 3.5694 52 35 2 0 0 0 0.30034 2 11325 11325;11442 13.906 3.0821 1 218150 + 58606 19469 37011 37030 67450;67451 67450 0.014577256147049411 YVTFQTQNS 9 Unmodified _YVTFQTQNS_ 0 0 0 L1M1_dup2106|chr3:195358111-195359463:+|3.0937383866908883|0.0185482389091233|7.38|151.0|39|3|sense L1M1_dup2106|chr3:195358111-195359463:+|3.0937383866908883|0.0185482389091233|7.38|151.0|39|3|sense L1M1_dup2106|chr3:195358111-195359463:+|3.0937383866908883|0.0185482389091233|7.38|151.0|39|3|sense MSMS UPN48_class_I_Rep_2 6 544.2545776367188 2 544.256371 1086.49819 NaN NaN NaN NaN NaN NaN NaN 54.353 1 57.935 57.435 58.435 3.5817 0 0 0 0.38478 1 11480 11480 4.3292 0 1 58607 8507 37012 37031 67452 67452 -0.04160028178739594 YVTIFKIF 8 Unmodified _YVTIFKIF_ 0 0 0 L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|2|1|sense L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|2|1|sense L1ME3B_dup977|chr2:121538798-121540363:+|1.1904278863906472|0.035809149457621|5.06|151.0|2|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 516.3021850585938 2 515.802229 1029.5899 0.32347 0.00016685 -4.3804 -0.0022594 -4.057 -0.0020926 515.8000224846796 85.708 0.14021 85.708 85.606 85.747 0 17 11 2 0 0 0 0.82752 1 20457 20457 2.3027 0 1 91557 58608 12742 37013 37032 67453 67453 0.07629306976400585 YVTLYFFY 8 Unmodified _YVTLYFFY_ 0 0 0 REV__L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|90|3|anti-sense REV__L1MA4A_dup2797|chr7:135480783-135482227:+|2.030263484246097|0.0167670157467088|6.92|151.0|90|3|anti-sense MSMS UPN48_class_I_Rep_3 7 558.276123046875 2 558.276044 1114.53753 NaN NaN NaN NaN NaN NaN NaN 32.028 1 35.729 35.229 36.229 3.7015 0 0 0 0.40738 1 4816 4816 0.79363 0 1 + 58609 25256 37014 37033 67454 67454 -0.015152761571926021 YVTRFVVF 8 Unmodified _YVTRFVVF_ 0 0 0 L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|95|2|anti-sense L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|95|2|anti-sense L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|95|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 515.7894897460938 2 515.789653 1029.56475 0.2871 0.00014808 -0.17674 -9.116E-05 0.11036 5.6921E-05 515.7894305562855 73.861 0.046844 77.342 77.303 77.35 3.4812 5 3 2 0 0 0 0.82752 1 17428 17428 18.135 0 1 75996 58610 11079 37015 37034 67455 67455 0.051152521738458745 YVTRFVVF 8 Unmodified _YVTRFVVF_ 0 0 0 L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|95|2|anti-sense L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|95|2|anti-sense L1MC1_dup10682|chr14:44973005-44974687:-|1.807157745218317|0.0202384521888894|6.48|151.0|95|2|anti-sense MSMS UPN48_class_I_Rep_2 6 515.7899169921875 2 515.789653 1029.56475 NaN NaN NaN NaN NaN NaN NaN 73.439 1 77.017 76.517 77.517 3.5779 0 0 0 0.39996 1 17243 17243 7.9102 0 1 58611 11079 37015 37034 67456 67456 0.051152521738458745 YVTRTAPLR 9 Unmodified _YVTRTAPLR_ 0 0 0 REV__nc|ENSG00000122783|Q9BWK5-2|CYREN REV__nc|ENSG00000122783|Q9BWK5-2|CYREN MULTI-MSMS UPN48_class_I_Rep_2 6 538.81396484375 2 538.81419 1075.61383 0.442 0.00023816 -0.33459 -0.00018028 0.10741 5.7877E-05 538.8139521879616 35.827 0.67835 39.515 39.112 39.791 3.6877 100 69 2 0 0 0 0.42249 1 5924 5924 6.7232 0 1 173260 + 58612 18762 37016 37035 67457 67457 0.07904540462754994 YVTRYDQL 8 Unmodified _YVTRYDQL_ 0 0 0 REV__ENST00000514092.5_1_5:88673161-88761545:+|nuORF REV__ENST00000514092.5_1_5:88673161-88761545:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 529.2696533203125 2 529.269281 1056.52401 0.32746 0.00017331 0.014032 7.4265E-06 0.34149 0.00018074 529.2691620058732 61.781 1.3034 64.948 64.598 65.902 3.1667 236 89 4 0 0 0 0.82752 1 14872 14872 7.9102 1.187 1 1039600 + 58613 22756 37017 37036 67458 67458 -0.001991339364394662 YVTSKSLGTA 10 Unmodified _YVTSKSLGTA_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MSMS UPN47_class_I_Rep_3 4 513.7761840820312 2 513.776939 1025.53933 NaN NaN NaN NaN NaN NaN NaN 16.876 1 20.238 19.738 20.738 3.3619 0 0 0 0.53105 1 1131 1131 0 0 1 + 58614 20149 37018 37037 67459 67459 0.027577328607776508 YVTTKLNIY 9 Unmodified _YVTTKLNIY_ 0 0 0 REV__Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|75|2|anti-sense REV__Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|75|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 557.7457885742188 2 557.810782 1113.60701 0.28972 0.00016161 0.0034449 1.9216E-06 0.29317 0.00016353 557.8107126606208 55.384 0.34743 58.939 58.842 59.19 3.5554 29 19 2 0 0 0 0.095427 1 11766 11766 20.454 11.86 1 99929 + 58615 17355 37019 37038 67460 67460 0.05475182791565203 YVTTSTRTY 9 Unmodified _YVTTSTRTY_ 0 0 0 ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF ENSG00000026025|ENST00000544301|VIM ENSG00000026025|ENST00000544301|VIM MULTI-MSMS UPN46_class_I_Rep_3 1 546.2718505859375 2 546.272021 1090.52949 0.13369 7.3034E-05 0.029255 1.5981E-05 0.16295 8.9015E-05 546.2718338451559 30.4 0.63764 30.4 30.152 30.789 0 97 49 3 0 0 0 0.073198 3 4940 4901;4940;4982 40.239 29.841 1 150010 58616 824 37020 37039 67461;67462;67463 67462 -0.012154551446201367 YVTVMNRR 8 Unmodified _YVTVMNRR_ 0 0 0 ENSG00000171481|ENST00000304820|OR1L3 ENSG00000171481|ENST00000304820|OR1L3 ENSG00000171481|ENST00000304820|OR1L3 MSMS UPN46_class_I_Rep_3 1 519.779296875 2 519.779293 1037.54403 NaN NaN NaN NaN NaN NaN NaN 84.974 1 84.974 84.474 85.474 0 0 0 0 0.40625 1 20247 20247 2.3027 0 1 58617 4522 37021 37040 67464 67464 0.0267633852254221 YVTVVLKL 8 Unmodified _YVTVVLKL_ 0 0 0 nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1 nc|ENSG00000136114|Q9NS62-3|THSD1 nc|ENSG00000136114|Q9NS62-3|THSD1 MSMS UPN47_class_I_Rep_2 3 467.8012390136719 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 71.112 1 74.395 73.895 74.895 3.2828 0 0 0 0.40738 1 17363 17363 0.79363 0 1 58618 2950 37022 37041 67465 67465 0.12045306976403936 YVVAFCCY 8 Unmodified _YVVAFCCY_ 0 0 0 REV__Cheshire_dup31|chr1:88884326-88885156:-|1.1836872178441429|0.0602478584802572|4.3|151.0|22|2|sense REV__Cheshire_dup31|chr1:88884326-88885156:-|1.1836872178441429|0.0602478584802572|4.3|151.0|22|2|sense MSMS UPN48_class_I_Rep_2 6 484.2062683105469 2 484.20625 966.397946 NaN NaN NaN NaN NaN NaN NaN 17.597 1 21.249 20.749 21.749 3.6518 0 0 0 0.40581 1 1054 1054 2.8892 0 1 + 58619 17408 37023 37042 67466 67466 -0.08659680037726503 YVVCVQGEEL 10 Unmodified _YVVCVQGEEL_ 0 0 0 REV__nc|ENSG00000173809|Q587J7-2|TDRD12 REV__nc|ENSG00000173809|Q587J7-2|TDRD12 MSMS UPN48_class_I_Rep_3 7 569.7581176757812 2 569.776082 1137.53761 NaN NaN NaN NaN NaN NaN NaN 13.328 1 16.86 16.36 17.36 3.5314 0 0 0 0.53105 1 231 231 0 0 1 + 58620 20498 37024 37043 67467 67467 -0.02565644219475871 YVVEHGLHF 9 Unmodified _YVVEHGLHF_ 0 0 0 REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|70|3|anti-sense REV__L1MCa_dup1181|chr3:23428949-23429887:+|1.0884915960532482|0.0179587484686024|5.92|149.0|70|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 550.7796020507812 2 550.779816 1099.54508 0.49496 0.00027262 0.069107 3.8063E-05 0.56407 0.00031068 550.7796911078348 51.328 0.55192 54.852 54.537 55.089 3.5246 80 38 3 0 0 0 0.32219 1 10603 10603 12.532 0 1 181040 + 58621 27183 37025 37044 67468 67468 -0.0007112383691492141 YVVEKNQL 8 Unmodified _YVVEKNQL_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|342|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|342|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|342|3|anti-sense MSMS UPN48_class_I_Rep_1 5 496.7637634277344 2 496.7742 991.533846 NaN NaN NaN NaN NaN NaN NaN 49.716 1 53.24 52.74 53.74 3.5246 0 0 0 0.38221 1 10077 10077 14.582 0 1 58622 14690 37026 37045 67469 67469 0.037740540689469526 YVVEKNQL 8 Unmodified _YVVEKNQL_ 0 0 0 L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|342|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|342|3|anti-sense L1PA7_dup10169|chr12:4671945-4678293:+|1.6736366660320794|0.1826920911147886|3.2|151.0|342|3|anti-sense MSMS UPN48_class_I_Rep_1 5 496.76361083984375 2 496.7742 991.533846 NaN NaN NaN NaN NaN NaN NaN 49.852 1 53.377 52.877 53.877 3.5246 0 0 0 0.38221 1 10119 10119 14.582 0 1 58623 14690 37026 37045 67470 67470 0.037740540689469526 YVVFPGYR 8 Unmodified _YVVFPGYR_ 0 0 0 ENST00000339121.9_1_7:120596408-120596513:+|nuORF ENST00000339121.9_1_7:120596408-120596513:+|nuORF ENST00000339121.9_1_7:120596408-120596513:+|nuORF MSMS UPN48_class_I_Rep_2 6 500.7662658691406 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 25.432 1 29.068 28.568 29.568 3.6363 0 0 0 0.40746 1 3097 3097 0.69038 0 1 58624 6221 37027 37046 67471 67471 0.018023926227101583 YVVFPGYR 8 Unmodified _YVVFPGYR_ 0 0 0 ENST00000339121.9_1_7:120596408-120596513:+|nuORF ENST00000339121.9_1_7:120596408-120596513:+|nuORF ENST00000339121.9_1_7:120596408-120596513:+|nuORF MSMS UPN48_class_I_Rep_2 6 500.76654052734375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 26.889 1 30.52 30.02 31.02 3.6311 0 0 0 0.40738 1 3486 3486 0.79363 0 1 58625 6221 37027 37046 67472 67472 0.018023926227101583 YVVFVVLLT 9 Unmodified _YVVFVVLLT_ 0 0 0 ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC MSMS UPN47_class_I_Rep_1 2 526.8212280273438 2 526.823161 1051.63177 NaN NaN NaN NaN NaN NaN NaN 116.56 1 120.16 119.66 120.66 3.6036 0 0 0 0.40038 1 28870 28870 0.6015 0 1 58626 666 37028 37047 67473 67473 0.10801862664948203 YVVGTKKQV 9 Unmodified _YVVGTKKQV_ 0 0 0 ENST00000436852.2_1_X:121673097-121673310:+|nuORF ENST00000436852.2_1_X:121673097-121673310:+|nuORF ENST00000436852.2_1_X:121673097-121673310:+|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 511.30645751953125 2 511.305667 1020.59678 0.25054 0.0001281 0.37743 0.00019298 0.62798 0.00032109 511.30578747461016 62.07 1.2253 65.438 65.113 66.338 3.3681 168 85 3 0 0 0 0.30034 2 14695 14695;14796 13.906 0.86358 1 305060 58627 6758 37029 37048 67474;67475 67474 0.08730619856999056 YVVGTKKQV 9 Unmodified _YVVGTKKQV_ 0 0 0 ENST00000436852.2_1_X:121673097-121673310:+|nuORF ENST00000436852.2_1_X:121673097-121673310:+|nuORF ENST00000436852.2_1_X:121673097-121673310:+|nuORF MULTI-MSMS UPN47_class_I_Rep_3 4 511.306884765625 2 511.305667 1020.59678 0.23157 0.00011841 0.62758 0.00032088 0.85915 0.00043929 511.30590924665967 62.565 1.2922 65.734 65.255 66.547 3.1698 131 82 3 0 0 0 0.30034 1 15012 15012 13.906 0.86358 1 292390 58628 6758 37029 37048 67476 67476 0.08730619856999056 YVVGYSGRGIE 11 Unmodified _YVVGYSGRGIE_ 0 0 0 REV__ENSG00000125834|ENST00000381482|STK35 REV__ENSG00000125834|ENST00000381482|STK35 MSMS UPN47_class_I_Rep_3 4 600.3057250976562 2 600.306395 1198.59824 NaN NaN NaN NaN NaN NaN NaN 40.817 1 44.054 43.554 44.554 3.2372 0 0 0 0.38417 1 8216 8216 1.4819 0 1 + 58629 18842 37030 37049 67477 67477 0.006882091551233316 YVVHFVIR 8 Unmodified _YVVHFVIR_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|292|3|anti-sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|292|3|anti-sense MSMS UPN47_class_I_Rep_3 4 516.8057250976562 2 516.803094 1031.59164 NaN NaN NaN NaN NaN NaN NaN 102.19 1 105.68 105.18 106.18 3.4873 0 0 0 0.40738 1 25136 25136 0.79363 0 1 + 58630 30028 37031 37050 67478 67478 0.07710360785040393 YVVHFVIR 8 Unmodified _YVVHFVIR_ 0 0 0 REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|292|3|anti-sense REV__L1PA7_dup1531|chr2:159623959-159629834:+|1.4241928678233788|0.0229705344459866|5.95|151.0|292|3|anti-sense MSMS UPN48_class_I_Rep_1 5 516.8047485351562 2 516.803094 1031.59164 NaN NaN NaN NaN NaN NaN NaN 73.318 1 76.8 76.3 77.3 3.4812 0 0 0 0.40738 1 17269 17269 0.79363 0 1 + 58631 30028 37031 37050 67479 67479 0.07710360785040393 YVVHIHHG 8 Unmodified _YVVHIHHG_ 0 0 0 L1PA8A_dup378|chr2:230189595-230191100:-|2.412615177160903|0.2162456102556212|3.48|151.0|31|2|sense L1PA8A_dup378|chr2:230189595-230191100:-|2.412615177160903|0.2162456102556212|3.48|151.0|31|2|sense L1PA8A_dup378|chr2:230189595-230191100:-|2.412615177160903|0.2162456102556212|3.48|151.0|31|2|sense MSMS UPN47_class_I_Rep_2 3 481.2546081542969 2 481.253769 960.492984 NaN NaN NaN NaN NaN NaN NaN 28.89 1 32.388 31.888 32.888 3.4986 0 0 0 0.40738 1 4548 4548 0.79363 0 1 58632 14979 37032 37051 67480 67480 0.011157575400034148 YVVIQDKVF 9 Unmodified _YVVIQDKVF_ 0 0 0 REV__L1PA2_dup4440|chr15:85433964-85439965:+|1.0286431950190111|0.1581883264422988|2.7|151.0|177|1|anti-sense REV__L1PA2_dup4440|chr15:85433964-85439965:+|1.0286431950190111|0.1581883264422988|2.7|151.0|177|1|anti-sense MSMS UPN48_class_I_Rep_1 5 555.8134765625 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 79.799 1 83.348 82.848 83.848 3.5487 0 0 0 0.2088 1 19060 19060 15.847 0 1 + 58633 29498 37033 37052 67481 67481 0.061674866541807205 YVVIRYLE 8 Unmodified _YVVIRYLE_ 0 0 0 REV__ENSG00000128342|ENST00000249075|LIF REV__ENSG00000128342|ENST00000249075|LIF MSMS UPN46_class_I_Rep_3 1 527.79931640625 2 527.800217 1053.58588 NaN NaN NaN NaN NaN NaN NaN 113.96 1 113.96 113.46 114.46 0 0 0 0 0.40738 1 28155 28155 0.79363 0 1 + 58634 18895 37034 37053 67482 67482 0.061232174826727714 YVVISTLL 8 Unmodified _YVVISTLL_ 0 0 0 L1ME4a_dup25811|chr13:28042233-28042381:+|1.043609152411341|1e-05|16.67|150.0|7|1|anti-sense L1ME4a_dup25811|chr13:28042233-28042381:+|1.043609152411341|1e-05|16.67|150.0|7|1|anti-sense L1ME4a_dup25811|chr13:28042233-28042381:+|1.043609152411341|1e-05|16.67|150.0|7|1|anti-sense MSMS UPN47_class_I_Rep_2 3 454.2797546386719 2 454.278586 906.54262 NaN NaN NaN NaN NaN NaN NaN 41.071 1 44.436 43.936 44.936 3.3655 0 0 0 0.40746 1 8240 8240 0.69038 0 1 58635 12864 37035 37054 67483 67483 0.08561027705434299 YVVKAVAGRPV 11 Unmodified _YVVKAVAGRPV_ 0 0 0 nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-1|HMCN2 MULTI-SECPEP UPN47_class_I_Rep_1 2 580.2691650390625 2 579.853316 1157.69208 0.3528 0.00020457 -0.82925 -0.00048084 -0.47645 -0.00027627 580.353470164563 70.974 0.044815 74.347 74.325 74.369 3.3733 6 3 2 0 0 0 22.551 1 17281 17281 6.7232 1.4925 1 90610 58636 3502;16708 37036 37055 67484 67484 0.11953973048025546 YVVLGLPLFF 10 Unmodified _YVVLGLPLFF_ 0 0 0 REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|31|1|anti-sense REV__ERVL-E-int_dup7916|chr19:9424014-9424849:+|2.6105194283363358|0.3110044129346206|3.07|151.0|31|1|anti-sense MSMS UPN46_class_I_Rep_3 1 584.3460083007812 2 584.344261 1166.67397 NaN NaN NaN NaN NaN NaN NaN 37.809 1 37.809 37.309 38.309 0 0 0 0 0.53105 1 7147 7147 1.8442 0 1 + 58637 23295 37037 37056 67485 67485 0.09729838073326391 YVVPFVAKV 9 Unmodified _YVVPFVAKV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS UPN47_class_I_Rep_2 3 511.3058776855469 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 62.853 1 66.109 65.609 66.609 3.2558 0 0 0 0.19137 1 14872 14872 16.942 1.0951 1 58638 2493 37038 37057 67486 67486 0.09132709350706136 YVVPFVAKV 9 Unmodified _YVVPFVAKV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS UPN47_class_I_Rep_2 3 511.30645751953125 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 62.902 1 66.158 65.658 66.658 3.2558 0 0 0 0.19137 1 14887 14887 16.942 1.0951 1 58639 2493 37038 37057 67487 67487 0.09132709350706136 YVVPFVAKV 9 Unmodified _YVVPFVAKV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS UPN47_class_I_Rep_2 3 511.30621337890625 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 62.996 1 66.252 65.752 66.752 3.2558 0 0 0 0.11494 1 14916 14916 21.747 0 1 58640 2493 37038 37057 67488 67488 0.09132709350706136 YVVPFVAKV 9 Unmodified _YVVPFVAKV_ 0 0 0 nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-3|CNOT1 MSMS UPN47_class_I_Rep_2 3 511.30694580078125 2 511.307678 1020.6008 NaN NaN NaN NaN NaN NaN NaN 63.062 1 66.318 65.818 66.818 3.2558 0 0 0 0.1074 1 14936 14936 23.148 1.4018 1 58641 2493 37038 37057 67489 67489 0.09132709350706136 YVVPIVPG 8 Unmodified _YVVPIVPG_ 0 0 0 REV__ENSG00000179914|ENST00000326245|ITLN1 REV__ENSG00000179914|ENST00000326245|ITLN1 MSMS UPN48_class_I_Rep_2 6 422.2535705566406 2 422.252372 842.49019 NaN NaN NaN NaN NaN NaN NaN 48.301 1 52.037 51.537 52.537 3.7361 0 0 0 0.4032 1 9636 9636 6.3541 1.1234 1 + 58642 20691 37039 37058 67490 67490 0.06264489362479253 YVVPQKTI 8 Unmodified _YVVPQKTI_ 0 0 0 REV__ENSG00000188342|ENST00000340473|GTF2F2 REV__ENSG00000188342|ENST00000340473|GTF2F2 MULTI-MSMS UPN46_class_I_Rep_3 1 474.2822265625 2 474.28166 946.548768 0.22393 0.00010621 1.4097 0.00066862 1.6337 0.00077482 474.28216176588273 44.729 0.062485 44.729 44.685 44.747 0 7 4 3 0 0 0 0.82752 1 9036 9036 0.79363 0 1 1656000 + 58643 20967 37040 37059 67491 67491 0.07335545936962262 YVVRAVHVF 9 Unmodified _YVVRAVHVF_ 0 0 0 ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34 ENSG00000170633|ENST00000361234|RNF34 ENSG00000170633|ENST00000361234|RNF34 MSMS UPN48_class_I_Rep_3 7 545.31640625 2 545.313826 1088.6131 NaN NaN NaN NaN NaN NaN NaN 79.721 1 83.363 82.863 83.863 3.6423 0 0 0 0.24828 1 18908 18908 13.508 4.9146 1 58644 4482 37041 37060 67492 67492 0.0723374581373264 YVVRHAFKV 9 Unmodified _YVVRHAFKV_ 0 0 0 L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|141|3|anti-sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|141|3|anti-sense L1M4_dup8027|chr7:99111550-99113558:+|3.235933310855202|0.0410849616584418|6.3|151.0|141|3|anti-sense MSMS UPN47_class_I_Rep_3 4 559.764404296875 2 559.827101 1117.63965 NaN NaN NaN NaN NaN NaN NaN 116.2 1 119.66 119.16 120.16 3.462 0 0 0 0.40038 1 28590 28590 0.6015 0 1 58645 8913 37042 37061 67493 67493 0.08553434705072505 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_1 2 569.7974853515625 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.406 1 55.965 55.465 56.465 3.5585 0 0 0 0.28556 1 11658 11658 34.187 2.0704 1 + 58646 25731 37043 37062 67494 67494 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_1 2 569.79833984375 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.537 1 56.096 55.596 56.596 3.5585 0 0 0 0.28556 1 11698 11698 34.187 5.1058 1 + 58647 25731 37043 37062 67495 67495 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_1 2 569.7979736328125 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.843 1 56.401 55.901 56.901 3.5585 0 0 0 0.40404 1 11790 11790 5.2307 0 1 + 58648 25731 37043 37062 67496 67496 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_2 3 569.7978515625 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.65 1 55.983 55.483 56.483 3.3332 0 0 0 0.33253 1 11758 11758 26.341 8.2063 1 + 58649 25731 37043 37062 67497 67497 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_2 3 569.7979736328125 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.858 1 56.185 55.685 56.685 3.3266 0 0 0 0.28556 1 11821 11821 34.187 5.1058 1 + 58650 25731 37043 37062 67498 67498 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_2 3 569.7998046875 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.874 1 56.201 55.701 56.701 3.3266 0 0 0 0.33253 1 11826 11826 26.341 9.2284 1 + 58651 25731 37043 37062 67499 67499 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_3 4 569.7976684570312 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 52.911 1 56.106 55.606 56.606 3.1948 0 0 0 0.33253 1 11892 11892 26.341 7.0843 1 + 58652 25731 37043 37062 67500 67500 0.022592174826968403 YVVRLYYY 8 Unmodified _YVVRLYYY_ 0 0 0 REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense REV__L1MB2_dup381|chr1:158834481-158839231:-|4.8150947940722455|0.2925537565346113|4.04|151.0|318|3|anti-sense MSMS UPN47_class_I_Rep_3 4 569.798583984375 2 569.800217 1137.58588 NaN NaN NaN NaN NaN NaN NaN 53.215 1 56.409 55.909 56.909 3.1948 0 0 0 0.36148 1 11986 11986 19.439 6.9074 1 + 58653 25731 37043 37062 67501 67501 0.022592174826968403 YVVRTRIF 8 Unmodified _YVVRTRIF_ 0 0 0 L1MC4_dup13518|chr9:130788198-130788964:-|1.0672963741147794|0.0258804059018243|5.37|150.0|50|3|anti-sense L1MC4_dup13518|chr9:130788198-130788964:-|1.0672963741147794|0.0258804059018243|5.37|150.0|50|3|anti-sense L1MC4_dup13518|chr9:130788198-130788964:-|1.0672963741147794|0.0258804059018243|5.37|150.0|50|3|anti-sense MSMS UPN48_class_I_Rep_3 7 527.7459106445312 2 527.313826 1052.6131 NaN NaN NaN NaN NaN NaN NaN 33.776 1 37.456 36.956 37.956 3.6797 0 0 0 0.40746 1 5296 5296 0.69038 0 1 58654 11401 37044 37063 67502 67502 0.08889745813735317 YVVSYSFINAA 11 Unmodified _YVVSYSFINAA_ 0 0 0 REV__L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|85|2|anti-sense REV__L1M5_dup12497|chr4:4445437-4446968:+|1.385290244742229|0.1270688118005247|3.45|151.0|85|2|anti-sense MSMS UPN48_class_I_Rep_1 5 617.3111572265625 2 617.311146 1232.60774 NaN NaN NaN NaN NaN NaN NaN 16.469 1 19.991 19.491 20.491 3.5217 0 0 0 0.38417 1 811 811 0 0 1 + 58655 24618 37045 37064 67503 67503 0.0007397744066111045 YVVTQKGVK 9 Unmodified _YVVTQKGVK_ 0 0 0 REV__L1MB4_dup8403|chr19:47635550-47635888:-|1.2442056306940552|0.0091648310497585|7.08|151.0|9|3|sense REV__L1MB4_dup8403|chr19:47635550-47635888:-|1.2442056306940552|0.0091648310497585|7.08|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_1 2 511.3065185546875 2 511.305667 1020.59678 0.25054 0.0001281 0.37743 0.00019298 0.62798 0.00032109 511.30578747461016 62.07 1.2253 65.438 65.113 66.338 3.3681 168 85 3 0 0 0 0.35081 1 14839 14839 10.824 0 1 305060 + 58656 26027 37046 37065 67504 67504 0.08730619856999056 YVVTQKGVK 9 Unmodified _YVVTQKGVK_ 0 0 0 REV__L1MB4_dup8403|chr19:47635550-47635888:-|1.2442056306940552|0.0091648310497585|7.08|151.0|9|3|sense REV__L1MB4_dup8403|chr19:47635550-47635888:-|1.2442056306940552|0.0091648310497585|7.08|151.0|9|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 511.3070068359375 2 511.305667 1020.59678 0.23157 0.00011841 0.62758 0.00032088 0.85915 0.00043929 511.30590924665967 62.565 1.2922 65.734 65.255 66.547 3.1698 131 82 3 0 0 0 0.30034 2 14957 14957;14991 13.906 0 1 292390 + 58657 26027 37046 37065 67505;67506 67505 0.08730619856999056 YVVTQVING 9 Unmodified _YVVTQVING_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|5|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|4|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|1|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|3|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|6|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|8|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|9|intron;ENSG00000160190.14,SLC37A1,chr21,+,I9.1,42526039,42534697|35|10.45|2|intron ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MSMS UPN48_class_I_Rep_3 7 496.7637634277344 2 496.7742 991.533846 NaN NaN NaN NaN NaN NaN NaN 49.284 1 52.913 52.413 53.413 3.6291 0 0 0 0.26661 1 9878 9878 12.532 0 1 58658 3859 37047 37066 67507 67507 0.037740540689469526 YVVVFFLA 8 Unmodified _YVVVFFLA_ 0 0 0 Cheshire_dup79|chr2:28767095-28767877:-|3.555578294838388|0.0976153064833124|5.19|151.0|38|2|anti-sense Cheshire_dup79|chr2:28767095-28767877:-|3.555578294838388|0.0976153064833124|5.19|151.0|38|2|anti-sense Cheshire_dup79|chr2:28767095-28767877:-|3.555578294838388|0.0976153064833124|5.19|151.0|38|2|anti-sense MSMS UPN46_class_I_Rep_3 1 479.2779846191406 2 479.275847 956.537141 NaN NaN NaN NaN NaN NaN NaN 76.544 1 76.544 76.044 77.044 0 0 0 0 0.40581 1 17861 17861 2.8892 0.31174 1 58659 561 37048 37067 67508 67508 0.05713348913604932 YVVVTQLRR 9 Unmodified _YVVVTQLRR_ 0 0 0 REV__nc|ENSG00000158941|Q8N163-2|CCAR2 REV__nc|ENSG00000158941|Q8N163-2|CCAR2 MSMS UPN47_class_I_Rep_1 2 567.3431396484375 2 567.343115 1132.67168 NaN NaN NaN NaN NaN NaN NaN 37.648 1 41.313 40.813 41.813 3.6652 0 0 0 0.39518 1 7168 7168 1.8442 0 1 + 58660 19855 37049 37068 67509 67509 0.11064802388250428 YVVYVFYFV 9 Unmodified _YVVYVFYFV_ 0 0 0 REV__L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|134|1|anti-sense REV__L1PA17_dup3281|chr11:9985622-9989429:+|1.3315789136833178|0.1238347984864349|3.43|149.0|134|1|anti-sense MSMS UPN46_class_I_Rep_3 1 599.8115844726562 2 599.812793 1197.61103 NaN NaN NaN NaN NaN NaN NaN 77.096 1 77.096 76.596 77.596 0 0 0 0 0.3264 1 18009 18009 9.3474 1.4373 1 + 58661 29467 37050 37069 67510 67510 0.020132722852622464 YVVYWQTK 8 Unmodified _YVVYWQTK_ 0 0 0 REV__L1MCa_dup5747|chr13:46027671-46029424:+|1.2312918289073216|0.0577094080141094|4.42|151.0|28|2|sense REV__L1MCa_dup5747|chr13:46027671-46029424:+|1.2312918289073216|0.0577094080141094|4.42|151.0|28|2|sense MSMS UPN46_class_I_Rep_3 1 543.7845458984375 2 543.784567 1085.55458 NaN NaN NaN NaN NaN NaN NaN 77.114 1 77.114 76.614 77.614 0 0 0 0 0.40738 1 18015 18015 0.79363 0 1 + 58662 27214 37051 37070 67511 67511 0.01522644448596111 YVVYYAVFHA 10 Unmodified _YVVYYAVFHA_ 0 0 0 REV__L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|189|2|anti-sense REV__L1PBa_dup820|chr5:117769103-117773259:+|1.6804339888819686|0.0376474359399548|5.48|134.0|189|2|anti-sense MSMS UPN47_class_I_Rep_2 3 616.3103637695312 2 616.310949 1230.60735 NaN NaN NaN NaN NaN NaN NaN 46.555 1 49.906 49.406 50.406 3.3515 0 0 0 0.53105 1 9914 9914 1.8442 0.36234 1 + 58663 30663 37052 37071 67512 67512 0.0012660251143188361 YVWCVCILL 9 Unmodified _YVWCVCILL_ 0 0 0 REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|103|2|anti-sense REV__L1MA3_dup5302|chrX:77583544-77585292:+|1.62443594470035|0.0473991271965135|5.1|151.0|103|2|anti-sense MSMS UPN48_class_I_Rep_1 5 556.2880859375 2 556.287574 1110.56059 NaN NaN NaN NaN NaN NaN NaN 59.064 1 62.544 62.044 63.044 3.4801 0 0 0 0.39326 1 12945 12945 2.3027 0 1 + 58664 25044 37053 37072 67513 67513 0.009737033642750248 YVWINLKK 8 Unmodified _YVWINLKK_ 0 0 0 ENST00000527145.1_1_11:44071584-44081467:+|nuORF;ENSG00000205126|ENST00000378832|ACCSL ENST00000527145.1_1_11:44071584-44081467:+|nuORF ENST00000527145.1_1_11:44071584-44081467:+|nuORF MSMS UPN47_class_I_Rep_3 4 532.3165893554688 2 532.318577 1062.6226 NaN NaN NaN NaN NaN NaN NaN 116.5 1 119.96 119.46 120.46 3.462 0 0 0 0.40738 1 28670 28670 0.79363 0 1 58665 5551 37054 37073 67514 67514 0.09379514099259723 YVWLCLVILR 10 Unmodified _YVWLCLVILR_ 0 0 0 Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|49|1|anti-sense Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|49|1|anti-sense Cheshire_dup475|chr8:18076736-18077920:-|1.5763220738185475|0.3574616272410734|2.14|151.0|49|1|anti-sense MSMS UPN47_class_I_Rep_1 2 639.3755493164062 2 639.375569 1276.73659 NaN NaN NaN NaN NaN NaN NaN 115.79 1 119.38 118.88 119.88 3.5943 0 0 0 0.53105 1 28658 28658 0 0 1 58666 551 37055 37074 67515 67515 0.1092866086983122 YVWLTILTV 9 Unmodified _YVWLTILTV_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MSMS UPN48_class_I_Rep_3 7 554.17578125 2 554.326068 1106.63758 NaN NaN NaN NaN NaN NaN NaN 112.28 1 115.95 115.45 116.45 3.6614 0 0 0 0.4029 1 26674 26674 0 0 1 + 58667 18397 37056 37075 67516 67516 0.0885296117658072 YVWSGKKL 8 Unmodified _YVWSGKKL_ 0 0 0 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 MSMS UPN48_class_I_Rep_1 5 490.7818298339844 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 69.579 1 73.034 72.534 73.534 3.4548 0 0 0 0.40604 1 16152 16152 2.5775 0 1 58668 4877 37057 37076 67517 67517 0.05850965656816243 YVWTFKHT 8 Unmodified _YVWTFKHT_ 0 0 0 REV__L1MC4_dup11509|chr8:9770654-9771108:+|1.1311979269091603|0.2823612892441307|2.0|151.0|22|2|anti-sense REV__L1MC4_dup11509|chr8:9770654-9771108:+|1.1311979269091603|0.2823612892441307|2.0|151.0|22|2|anti-sense MSMS UPN46_class_I_Rep_3 1 541.2887573242188 2 541.276909 1080.53927 NaN NaN NaN NaN NaN NaN NaN 49.456 1 49.456 48.956 49.956 0 0 0 0 0.40581 1 10383 10383 2.8892 0 1 + 58669 26802 37058 37077 67518 67518 0.0022177765142714634 YVWVQYVW 8 Unmodified _YVWVQYVW_ 0 0 0 nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1 nc|ENSG00000204178|Q8N5G2-3|MACO1 nc|ENSG00000204178|Q8N5G2-3|MACO1 MSMS UPN48_class_I_Rep_3 7 571.7891845703125 2 571.78711 1141.55967 NaN NaN NaN NaN NaN NaN NaN 50.925 1 54.535 54.035 55.035 3.6105 0 0 0 0.40581 1 10383 10383 2.8892 0 1 58670 5504 37059 37078 67519 67519 -0.005450516887776757 YVWVTYNR 8 Unmodified _YVWVTYNR_ 0 0 0 REV__L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|45|1|anti-sense REV__L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|45|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 550.7796630859375 2 550.779816 1099.54508 0.29812 0.0001642 -0.24235 -0.00013348 0.055769 3.0717E-05 550.7794461277292 51.102 0.64613 54.695 54.271 54.917 3.5933 43 30 2 0 0 0 0.82752 2 11247 11247;11319 9.3474 0 1 81964 + 58671 24702 37060 37079 67520;67521 67520 -0.0007112383693765878 YVWVTYNR 8 Unmodified _YVWVTYNR_ 0 0 0 REV__L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|45|1|anti-sense REV__L1M5_dup5444|chr2:68199260-68200286:-|2.462250877072542|0.0393874829564968|5.97|151.0|45|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 550.7798461914062 2 550.779816 1099.54508 0.48928 0.00026949 -0.21214 -0.00011684 0.27714 0.00015264 550.7796971891042 51.196 0.59756 54.864 54.575 55.173 3.6679 69 40 2 0 0 0 0.82752 1 10599 10599 9.3474 0 1 179470 + 58672 24702 37060 37079 67522 67522 -0.0007112383693765878 YVWYHSPR 8 Unmodified _YVWYHSPR_ 0 0 0 REV__L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|109|3|sense REV__L1PA5_dup1881|chr3:51573843-51577744:-|2.3054702831919323|0.0231855835433906|6.64|151.0|109|3|sense MSMS UPN47_class_I_Rep_2 3 554.2720947265625 2 554.272158 1106.52976 NaN NaN NaN NaN NaN NaN NaN 84.693 1 88.116 87.616 88.616 3.4232 0 0 0 0.40798 1 21111 21111 0 0 1 + 58673 29722 37061 37080 67523 67523 -0.019239906341226742 YVWYKIRI 8 Unmodified _YVWYKIRI_ 0 0 0 L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|68|1|anti-sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|68|1|anti-sense L1MC_dup327|chr1:168256910-168258621:-|1.4169759593189075|0.324753606271118|2.13|151.0|68|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 570.7872314453125 2 570.831852 1139.64915 0.41591 0.00023741 0.061956 3.5367E-05 0.47786 0.00027278 570.8319960694653 49.154 0.15092 52.871 52.774 52.925 3.7175 13 11 2 0 0 0 0.72333 1 9902 9902 2.3027 0 1 57789 58674 11059 37062 37081 67524 67524 0.0849120299058086 YVYAIKEGTM 10 Unmodified _YVYAIKEGTM_ 0 0 0 REV__ENSG00000145391|ENST00000274031|SETD7 REV__ENSG00000145391|ENST00000274031|SETD7 MSMS UPN48_class_I_Rep_3 7 587.7947998046875 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 49.572 1 53.201 52.701 53.701 3.6291 0 0 0 0.53105 1 9965 9965 3.5965 0.31518 1 + 58675 19513 37063 37082 67525 67525 -0.005847673228117856 YVYCLFRH 8 Unmodified _YVYCLFRH_ 0 0 0 Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|77|3|sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|77|3|sense Tigger1_dup8170|chr10:76233174-76235518:-|1.101996599688288|0.0233833849614854|5.56|147.0|77|3|sense MULTI-MSMS UPN47_class_I_Rep_3 4 550.7705688476562 2 550.770937 1099.52732 -0.44768 -0.00024657 -0.40449 -0.00022278 -0.85217 -0.00046935 550.7705317216302 13.01 0.13553 16.384 16.344 16.479 3.3734 26 15 2 0 0 0 0.82752 1 223 223 0.79363 0 1 36455 58676 33192 37064 37083 67526 67526 -0.01846162363426629 YVYDSAFHP 9 Unmodified _YVYDSAFHP_ 0 0 0 ENSG00000107819|ENST00000393459|SFXN3 ENSG00000107819|ENST00000393459|SFXN3 ENSG00000107819|ENST00000393459|SFXN3 MULTI-MSMS UPN48_class_I_Rep_1 5 550.748291015625 2 549.748182 1097.48181 0.56151 0.00030869 0.34772 0.00019116 0.90923 0.00049985 550.7486702551254 66.239 0.61324 69.69 69.371 69.984 3.4516 80 40 3 0 0 0 0.45688 1 15137 15137 4.756 0 1 196080 58677 1834 37065 37084 67527 67527 -0.06303109344821678 YVYEYLLHV 9 Unmodified _YVYEYLLHV_ 0 0 0 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron MULTI-SECPEP UPN47_class_I_Rep_1 2 599.7348022460938 2 599.810782 1197.60701 0.38184 0.00022903 0.20296 0.00012174 0.5848 0.00035077 599.810873037064 71.262 0.24776 74.637 74.557 74.804 3.3751 27 19 2 0 0 0 0.070541 1 17366 17366 28.487 20.577 1 84984 58678 3406 37066 37085 67528 67528 0.016111827915665344 YVYEYLLHV 9 Unmodified _YVYEYLLHV_ 0 0 0 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron MSMS UPN47_class_I_Rep_2 3 599.8106079101562 2 599.810782 1197.60701 NaN NaN NaN NaN NaN NaN NaN 71.772 1 75.061 74.561 75.561 3.2899 0 0 0 0.24828 1 17562 17562 13.508 7.3021 1 58679 3406 37066 37085 67529 67529 0.016111827915665344 YVYEYLLHV 9 Unmodified _YVYEYLLHV_ 0 0 0 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron MSMS UPN47_class_I_Rep_3 4 599.8114624023438 2 599.810782 1197.60701 NaN NaN NaN NaN NaN NaN NaN 71.656 1 74.875 74.375 75.375 3.2188 0 0 0 0.027434 1 17595 17595 48.346 35.814 1 58680 3406 37066 37085 67530 67530 0.016111827915665344 YVYEYLLHV 9 Unmodified _YVYEYLLHV_ 0 0 0 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3 ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron ENSG00000157216.15,SSBP3,chr1,-,I13.1,54258150,54281437|36|9.7|1|intron MSMS UPN47_class_I_Rep_3 4 599.810791015625 2 599.810782 1197.60701 NaN NaN NaN NaN NaN NaN NaN 71.817 1 75.036 74.536 75.536 3.2188 0 0 0 0.38299 1 17644 17644 4.756 1.7608 1 58681 3406 37066 37085 67531 67531 0.016111827915665344 YVYFPYYI 8 Unmodified _YVYFPYYI_ 0 0 0 REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|87|2|anti-sense REV__L1M4_dup8850|chr8:61542148-61543855:-|1.504736328586992|0.019662083130218|6.26|151.0|87|2|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2749633789062 2 564.276044 1126.53753 NaN NaN NaN NaN NaN NaN NaN 111.75 1 115.39 114.89 115.89 3.6326 0 0 0 0.40738 1 27113 27113 0.79363 0 1 + 58682 24463 37067 37086 67532 67532 -0.02067276157208653 YVYGEKKN 8 Unmodified _YVYGEKKN_ 0 0 0 L1PA13_dup4696|chr9:92694642-92696081:-|3.568177118469532|0.0126709545780204|8.14|151.0|5|1|sense L1PA13_dup4696|chr9:92694642-92696081:-|3.568177118469532|0.0126709545780204|8.14|151.0|5|1|sense L1PA13_dup4696|chr9:92694642-92696081:-|3.568177118469532|0.0126709545780204|8.14|151.0|5|1|sense MSMS UPN48_class_I_Rep_1 5 500.7769470214844 2 500.758549 999.502546 NaN NaN NaN NaN NaN NaN NaN 72.754 1 76.227 75.727 76.727 3.4732 0 0 0 0.40738 1 17097 17097 0.79363 0 1 58683 13758 37068 37087 67533 67533 0.00277481034856919 YVYGLRPL 8 Unmodified _YVYGLRPL_ 0 0 0 REV__THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|4|1|sense REV__THE1B_dup12837|chrX:2372961-2373301:-|1.0815508181114488|0.0077210833158632|7.13|151.0|4|1|sense MSMS UPN47_class_I_Rep_1 2 490.7805480957031 2 490.781828 979.549102 NaN NaN NaN NaN NaN NaN NaN 117.53 1 121.14 120.64 121.64 3.6036 0 0 0 0.40738 1 29141 29141 0.79363 0 1 + 58684 32226 37069 37088 67534 67534 0.05850965656793505 YVYHHCISS 9 Unmodified _YVYHHCISS_ 0 0 0 L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|110|1|anti-sense L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|110|1|anti-sense L1M4a1_dup1701|chr10:112788001-112790846:-|3.4602191864309577|0.0253369256519453|7.09|151.0|110|1|anti-sense MSMS UPN47_class_I_Rep_3 4 554.7491455078125 2 554.747659 1107.48076 NaN NaN NaN NaN NaN NaN NaN 18.751 1 22.106 21.606 22.606 3.3545 0 0 0 0.39428 1 1621 1621 2.0598 0.86641 1 58685 8942 37070 37089 67535 67535 -0.06867646985369902 YVYIFMEY 8 Unmodified _YVYIFMEY_ 0 0 0 L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|208|2|anti-sense L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|208|2|anti-sense L1MA3_dup2051|chr3:195229252-195233910:-|1.593287040999852|0.0836773973120315|4.25|151.0|208|2|anti-sense MSMS UPN47_class_I_Rep_3 4 564.2601318359375 2 564.259536 1126.50452 NaN NaN NaN NaN NaN NaN NaN 20.709 1 24.059 23.559 24.559 3.3496 0 0 0 0.40738 1 2186 2186 0.79363 0 1 58686 9498 37071 37090 67536 67536 -0.05367226271550862 YVYISTQKI 9 Unmodified _YVYISTQKI_ 0 0 0 REV__Tigger2_dup847|chr4:165318714-165319627:+|1.4834530424222023|0.4409952001645885|1.75|151.0|53|2|anti-sense REV__Tigger2_dup847|chr4:165318714-165319627:+|1.4834530424222023|0.4409952001645885|1.75|151.0|53|2|anti-sense MSMS UPN48_class_I_Rep_3 7 557.8106689453125 2 557.810782 1113.60701 NaN NaN NaN NaN NaN NaN NaN 44.875 1 48.512 48.012 49.012 3.6372 0 0 0 0.39518 1 8528 8528 1.8442 0 1 + 58687 32681 37072 37091 67537 67537 0.05475182791565203 YVYIYVFF 8 Unmodified _YVYIYVFF_ 0 0 0 L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|41|3|anti-sense L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|41|3|anti-sense L1MB7_dup5718|chr4:87016572-87017206:-|1.1776472194453738|0.0135665945459897|6.44|151.0|41|3|anti-sense MSMS UPN48_class_I_Rep_2 6 557.2850341796875 2 557.286411 1112.55827 NaN NaN NaN NaN NaN NaN NaN 22.576 1 26.219 25.719 26.719 3.6432 0 0 0 0.40738 1 2329 2329 0.79363 0 1 58688 10854 37073 37092 67538 67538 0.0064931422248264425 YVYIYYSF 8 Unmodified _YVYIYYSF_ 0 0 0 REV__L1ME1_dup3619|chr2:87693364-87694850:+|1.1615147572063118|0.0105823806041689|6.78|149.0|81|2|anti-sense REV__L1ME1_dup3619|chr2:87693364-87694850:+|1.1615147572063118|0.0105823806041689|6.78|149.0|81|2|anti-sense MSMS UPN48_class_I_Rep_1 5 559.2650146484375 2 559.265676 1116.5168 NaN NaN NaN NaN NaN NaN NaN 32.246 1 35.772 35.272 36.272 3.5266 0 0 0 0.40738 1 4879 4879 0.79363 0 1 + 58689 27767 37074 37093 67539 67539 -0.036798665368678485 YVYLALFYF 9 Unmodified _YVYLALFYF_ 0 0 0 REV__L1MB8_dup15573|chr20:1139767-1140923:+|2.6786211635220094|0.2745398546550024|3.29|151.0|52|1|anti-sense REV__L1MB8_dup15573|chr20:1139767-1140923:+|2.6786211635220094|0.2745398546550024|3.29|151.0|52|1|anti-sense MSMS UPN46_class_I_Rep_3 1 599.8109741210938 2 599.812793 1197.61103 NaN NaN NaN NaN NaN NaN NaN 76.947 1 76.947 76.447 77.447 0 0 0 0 0.381 1 17967 17967 5.2307 0 1 + 58690 26381 37075 37094 67540 67540 0.020132722852622464 YVYLKYLIKS 10 Unmodified _YVYLKYLIKS_ 0 0 0 L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|28|3|sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|28|3|sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|28|3|sense MSMS UPN47_class_I_Rep_3 4 645.37841796875 2 645.378832 1288.74311 NaN NaN NaN NaN NaN NaN NaN 68.167 1 71.365 70.865 71.865 3.1977 0 0 0 0.53105 1 16546 16546 1.4819 0 1 58691 12799 37076 37095 67541 67541 0.11028877302237561 YVYLKYLIKS 10 Unmodified _YVYLKYLIKS_ 0 0 0 L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|28|3|sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|28|3|sense L1ME3D_dup4091|chr21:37099537-37100324:+|1.796858614764921|0.3094819518132347|2.54|151.0|28|3|sense MSMS UPN47_class_I_Rep_3 4 645.3790283203125 2 645.378832 1288.74311 NaN NaN NaN NaN NaN NaN NaN 72.325 1 75.552 75.052 76.052 3.2271 0 0 0 0.53105 1 17798 17798 1.4819 0 1 58692 12799 37076 37095 67542 67542 0.11028877302237561 YVYLLSWDF 9 Unmodified _YVYLLSWDF_ 0 0 0 HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|80|3|anti-sense HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|80|3|anti-sense HAL1_dup18367|chr14:55314788-55316040:-|1.341130846894625|0.035441855552285|5.24|151.0|80|3|anti-sense MSMS UPN48_class_I_Rep_2 6 603.2998657226562 2 603.297507 1204.58046 NaN NaN NaN NaN NaN NaN NaN 61.549 1 65.023 64.523 65.523 3.4738 0 0 0 0.19137 1 13682 13682 16.942 2.104 1 58693 7839 37077 37096 67543 67543 -0.013645060997760083 YVYMYSFY 8 Unmodified _YVYMYSFY_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS UPN47_class_I_Rep_2 3 568.2418823242188 2 568.243886 1134.47322 NaN NaN NaN NaN NaN NaN NaN 66.041 1 69.3 68.8 69.8 3.2588 0 0 0 0.38547 1 15841 15841 13.508 1.2672 1 58694 1167 37078 37097 67544 67544 -0.08863799305640896 YVYMYVCIHA 10 Unmodified _YVYMYVCIHA_ 0 0 0 REV__L1MEg_dup7749|chr9:6469545-6470089:+|1.0973378872717623|0.0046924074803706|7.87|151.0|27|2|anti-sense REV__L1MEg_dup7749|chr9:6469545-6470089:+|1.0973378872717623|0.0046924074803706|7.87|151.0|27|2|anti-sense MSMS UPN47_class_I_Rep_1 2 631.2887573242188 2 631.290845 1260.56714 NaN NaN NaN NaN NaN NaN NaN 32.346 1 36.059 35.559 36.559 3.7131 0 0 0 0.53105 1 5555 5555 4.3292 0.38484 1 + 58695 28781 37079 37098 67545 67545 -0.052724034750099236 YVYPMWIPF 9 Unmodified _YVYPMWIPF_ 0 0 0 REV__L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|72|2|anti-sense REV__L1PREC2_dup2280|chr5:37133534-37134794:-|2.0327095807622486|0.0568520850940906|5.16|151.0|72|2|anti-sense MSMS UPN47_class_I_Rep_2 3 405.8669128417969 3 405.868423 1214.58344 NaN NaN NaN NaN NaN NaN NaN 29.473 1 32.965 32.465 33.465 3.4923 0 0 0 0.39036 1 4725 4725 2.9952 0.26005 1 + 58696 30697 37080 37099 67546 67546 -0.015269542466285202 YVYRQYLK 8 Unmodified _YVYRQYLK_ 0 0 0 REV__MER44A_dup2054|chr16:75005562-75005799:-|1.0741435270986246|0.0056245965917951|7.58|150.0|5|2|sense REV__MER44A_dup2054|chr16:75005562-75005799:-|1.0741435270986246|0.0056245965917951|7.58|150.0|5|2|sense MSMS UPN48_class_I_Rep_3 7 566.8106079101562 2 566.811116 1131.60768 NaN NaN NaN NaN NaN NaN NaN 72.925 1 76.463 75.963 76.963 3.5373 0 0 0 0.39408 1 17033 17033 10.183 0 1 + 58697 31309 37081 37100 67547 67547 0.04714022231269155 YVYRSVPFT 9 Unmodified _YVYRSVPFT_ 0 0 0 REV__Tigger3a_dup4080|chr12:131993574-131993880:-|1.2327285845480271|0.116236383357401|3.41|151.0|1|1|sense REV__Tigger3a_dup4080|chr12:131993574-131993880:-|1.2327285845480271|0.116236383357401|3.41|151.0|1|1|sense MULTI-MSMS UPN48_class_I_Rep_2 6 566.295654296875 2 566.295299 1130.57605 0.4863 0.00027539 0.31904 0.00018067 0.80534 0.00045606 566.2953233555311 69.681 0.14269 73.203 73.131 73.274 3.5216 16 11 2 0 0 0 0.41259 1 16154 16154 7.2892 1.5288 1 117690 + 58698 32717 37082 37101 67548 67548 0.01598029477304408 YVYSHFLQF 9 Unmodified _YVYSHFLQF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS UPN48_class_I_Rep_1 5 602.2943725585938 2 602.295299 1202.57605 0.46328 0.00027903 -0.33418 -0.00020127 0.1291 7.7758E-05 602.7965517623685 69.987 0.62194 73.446 73.181 73.803 3.4598 84 49 2 0 0 0 0.1249 5 16346 16225;16262;16303;16344;16346 29.082 8.628 1 168830 58699 3327 37083 37102 67549;67550;67551;67552;67553 67553 -0.017139705226782098 YVYSHFLQF 9 Unmodified _YVYSHFLQF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS UPN48_class_I_Rep_2 6 602.7969360351562 2 602.295299 1202.57605 0.48334 0.00029111 0.16772 0.00010102 0.65106 0.00039213 602.2950138941281 69.809 0.57337 73.33 73.067 73.64 3.5216 83 46 3 0 0 0 0.082592 6 16222 16155;16162;16186;16222;16227;16272 37.974 17.52 1 190760 58700 3327 37083 37102 67554;67555;67556;67557;67558;67559 67557 -0.017139705226782098 YVYSHFLQF 9 Unmodified _YVYSHFLQF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MSMS UPN48_class_I_Rep_2 6 602.2948608398438 2 602.295299 1202.57605 NaN NaN NaN NaN NaN NaN NaN 69.577 1 73.099 72.599 73.599 3.5216 0 0 0 0.37692 1 16126 16126 6.2058 1.3088 1 58701 3327 37083 37102 67560 67560 -0.017139705226782098 YVYSHFLQF 9 Unmodified _YVYSHFLQF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS UPN48_class_I_Rep_3 7 602.2957763671875 2 602.295299 1202.57605 0.60054 0.0003617 -0.032066 -1.9313E-05 0.56847 0.00034239 602.2951057199652 69.687 0.64617 73.2 72.995 73.641 3.5128 77 51 2 0 0 0 0.15122 5 16070 16030;16070;16111;16153;16158 25.399 5.7505 1 170110 58702 3327 37083 37102 67561;67562;67563;67564;67565 67562 -0.017139705226782098 YVYSHFLQF 9 Unmodified _YVYSHFLQF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MATCH-MSMS UPN47_class_I_Rep_1 2 2 602.295299 1202.57605 0.37855 0.000228 3.8401 0.0023129 4.2186 0.0025409 602.2978690817799 70.174 0.072365 73.545 73.493 73.565 3.3713 0.16492 0.0047259 NaN 37.974 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 123410 58703 3327 37083 37102 -0.017139705226782098 YVYSHLYR 8 Unmodified _YVYSHLYR_ 0 0 0 REV__L1MA4A_dup4235|chr10:101921468-101922137:+|1.0151658880547338|0.0090012302036483|6.82|150.0|2|1|sense REV__L1MA4A_dup4235|chr10:101921468-101922137:+|1.0151658880547338|0.0090012302036483|6.82|150.0|2|1|sense MULTI-MSMS UPN48_class_I_Rep_3 7 550.7807006835938 2 550.779816 1099.54508 0.28896 0.00015915 0.24724 0.00013617 0.5362 0.00029533 550.7798821935859 51.232 0.56754 54.842 54.628 55.195 3.6105 63 43 2 0 0 0 0.82752 2 10507 10507;10550 9.3474 0 1 173900 + 58704 25036 37084 37103 67566;67567 67566 -0.0007112383691492141 YVYTNTHR 8 Unmodified _YVYTNTHR_ 0 0 0 L1PA16_dup4936|chr5:154427859-154428800:+|1.1853063962241774|0.3766079038733024|1.65|151.0|52|2|anti-sense L1PA16_dup4936|chr5:154427859-154428800:+|1.1853063962241774|0.3766079038733024|1.65|151.0|52|2|anti-sense L1PA16_dup4936|chr5:154427859-154428800:+|1.1853063962241774|0.3766079038733024|1.65|151.0|52|2|anti-sense MSMS UPN47_class_I_Rep_2 3 527.2579956054688 2 527.259248 1052.50394 NaN NaN NaN NaN NaN NaN NaN 17.55 1 20.937 20.437 21.437 3.387 0 0 0 0.40746 1 1332 1332 0.69038 0 1 58705 14094 37085 37104 67568 67568 -0.020208848764013965 YVYTVFTCTT 10 Unmodified _YVYTVFTCTT_ 0 0 0 REV__L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|179|1|anti-sense REV__L1PA5_dup4860|chr7:7196065-7202373:-|2.994901272733979|0.0786250887399256|5.25|151.0|179|1|anti-sense MSMS UPN47_class_I_Rep_2 3 599.2789306640625 2 599.278457 1196.54236 NaN NaN NaN NaN NaN NaN NaN 66.887 1 70.15 69.65 70.65 3.2636 0 0 0 0.53105 1 16097 16097 1.4819 0.68827 1 + 58706 29771 37086 37105 67569 67569 -0.04804760076763159 YVYVITLRKT 10 Unmodified _YVYVITLRKT_ 0 0 0 MLT1F2_dup2047|chr5:138993465-138993971:+|1.2349841892213815|0.024395727821177|5.66|151.0|15|3|sense MLT1F2_dup2047|chr5:138993465-138993971:+|1.2349841892213815|0.024395727821177|5.66|151.0|15|3|sense MLT1F2_dup2047|chr5:138993465-138993971:+|1.2349841892213815|0.024395727821177|5.66|151.0|15|3|sense MSMS UPN46_class_I_Rep_3 1 628.3740234375 2 628.374081 1254.73361 NaN NaN NaN NaN NaN NaN NaN 31.73 1 31.73 31.23 32.23 0 0 0 0 0.53105 1 5340 5340 0 0 1 58707 16394 37087 37106 67570 67570 0.11643109016677045 YVYVIWKR 8 Unmodified _YVYVIWKR_ 0 0 0 REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|3|1|sense REV__L1MA1_dup2763|chrX:115928904-115930912:-|1.3672076275927596|0.0875300381566097|3.97|126.0|3|1|sense MSMS UPN48_class_I_Rep_2 6 563.822021484375 2 563.824027 1125.6335 NaN NaN NaN NaN NaN NaN NaN 45.538 1 49.296 48.796 49.796 3.7579 0 0 0 0.40604 1 8802 8802 2.5775 0.73324 1 + 58708 24786 37088 37107 67571 67571 0.07570916473559919 YVYVSSEAGF 10 Unmodified _YVYVSSEAGF_ 0 0 0 REV__L1PA5_dup3555|chr5:43438835-43443391:-|1.4495344463682591|0.155645248031579|3.22|151.0|275|3|anti-sense REV__L1PA5_dup3555|chr5:43438835-43443391:-|1.4495344463682591|0.155645248031579|3.22|151.0|275|3|anti-sense MSMS UPN48_class_I_Rep_1 5 561.2615356445312 2 561.261122 1120.50769 NaN NaN NaN NaN NaN NaN NaN 64.43 1 67.884 67.384 68.384 3.4541 0 0 0 0.53105 1 14584 14584 13.906 0.86358 1 + 58709 29752 37089 37108 67572 67572 -0.047742598932018154 YVYVTYKL 8 Unmodified _YVYVTYKL_ 0 0 0 REV__L1ME1_dup20147|chr10:103162800-103163653:-|2.749665118025873|0.0255307172663119|6.75|151.0|46|2|anti-sense REV__L1ME1_dup20147|chr10:103162800-103163653:-|2.749665118025873|0.0255307172663119|6.75|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_2 6 524.8058471679688 2 524.789318 1047.56408 NaN NaN NaN NaN NaN NaN NaN 59.414 1 62.901 62.401 63.401 3.4868 0 0 0 0.40364 1 13031 13031 5.7604 0 1 + 58710 27659 37090 37109 67573 67573 0.04220412734139245 YVYVTYKL 8 Unmodified _YVYVTYKL_ 0 0 0 REV__L1ME1_dup20147|chr10:103162800-103163653:-|2.749665118025873|0.0255307172663119|6.75|151.0|46|2|anti-sense REV__L1ME1_dup20147|chr10:103162800-103163653:-|2.749665118025873|0.0255307172663119|6.75|151.0|46|2|anti-sense MSMS UPN48_class_I_Rep_3 7 524.80517578125 2 524.789318 1047.56408 NaN NaN NaN NaN NaN NaN NaN 59.242 1 62.766 62.266 63.266 3.5231 0 0 0 0.39408 1 12913 12913 10.183 3.8293 1 + 58711 27659 37090 37109 67574 67574 0.04220412734139245 YVYYHILLI 9 Unmodified _YVYYHILLI_ 0 0 0 L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|50|1|anti-sense L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|50|1|anti-sense L1MB3_dup12655|chr13:77248155-77249289:+|1.2053157210591312|0.0587658183283412|4.36|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 598.8369140625 2 598.839342 1195.66413 NaN NaN NaN NaN NaN NaN NaN 71.91 1 75.437 74.937 75.937 3.5266 0 0 0 0.40038 1 16731 16731 0.6015 0 1 58712 10333 37091 37110 67575 67575 0.07412650067931281 YWAFIVWF 8 Unmodified _YWAFIVWF_ 0 0 0 REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|84|3|anti-sense REV__L1M7_dup1730|chr8:65752071-65753280:-|1.6842194031427613|0.0578443492834317|4.86|151.0|84|3|anti-sense MSMS UPN47_class_I_Rep_3 4 566.2855834960938 2 566.286746 1130.55894 NaN NaN NaN NaN NaN NaN NaN 29.198 1 32.522 32.022 33.022 3.3235 0 0 0 0.40738 1 4686 4686 0.79363 0 1 + 58713 24731 37092 37111 67576 67576 -0.001118463378134038 YWAFLCWE 8 Unmodified _YWAFLCWE_ 0 0 0 L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|55|1|anti-sense L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|55|1|anti-sense L1MB2_dup1337|chr3:25651880-25653401:+|3.523119321705434|0.1341850153824633|4.71|151.0|55|1|anti-sense MSMS UPN47_class_I_Rep_2 3 559.2426147460938 2 559.244221 1116.47389 NaN NaN NaN NaN NaN NaN NaN 30.286 1 33.768 33.268 34.268 3.4821 0 0 0 0.40738 1 4970 4970 0.79363 0 1 58714 10203 37093 37112 67577 67577 -0.07968959865934266 YWAHLLRR 8 Unmodified _YWAHLLRR_ 0 0 0 REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF MSMS UPN46_class_I_Rep_3 1 557.8146362304688 2 557.817067 1113.61958 NaN NaN NaN NaN NaN NaN NaN 119.39 1 119.39 118.89 119.89 0 0 0 0 0.40738 1 29673 29673 0.79363 0 1 + 58715 23061 37094 37113 67578 67578 0.06731683765133312 YWAHLLRR 8 Unmodified _YWAHLLRR_ 0 0 0 REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF MSMS UPN47_class_I_Rep_3 4 558.2548828125 2 557.817067 1113.61958 NaN NaN NaN NaN NaN NaN NaN 20.272 1 23.621 23.121 24.121 3.3496 0 0 0 0.40798 1 2059 2059 0 0 1 + 58716 23061 37094 37113 67579 67579 0.06731683765133312 YWATKIVIV 9 Unmodified _YWATKIVIV_ 0 0 0 REV__L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|62|3|sense REV__L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|62|3|sense MSMS UPN47_class_I_Rep_1 2 546.8260498046875 2 546.826235 1091.63792 NaN NaN NaN NaN NaN NaN NaN 14.198 1 17.673 17.173 18.173 3.475 0 0 0 0.4029 1 511 511 0 0 1 + 58717 24763 37095 37114 67580 67580 0.0957638089644206 YWATKIVIV 9 Unmodified _YWATKIVIV_ 0 0 0 REV__L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|62|3|sense REV__L1MA1_dup1722|chr7:26800151-26802260:+|1.183874399450114|0.0165927025496764|6.16|148.0|62|3|sense MSMS UPN47_class_I_Rep_1 2 546.8262939453125 2 546.826235 1091.63792 NaN NaN NaN NaN NaN NaN NaN 14.503 1 17.978 17.478 18.478 3.475 0 0 0 0.4029 1 579 579 0 0 1 + 58718 24763 37095 37114 67581 67581 0.0957638089644206 YWAWYYQP 8 Unmodified _YWAWYYQP_ 0 0 0 REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|131|3|sense REV__L1MA2_dup2720|chr6:138630800-138635831:+|1.035333695815164|0.0211823012286164|5.61|150.0|131|3|sense MULTI-MSMS UPN47_class_I_Rep_2 3 588.7235717773438 2 588.761092 1175.50763 0.048846 2.8758E-05 -1.3191 -0.00077661 -1.2702 -0.00074786 588.7602636709931 41.528 0.57386 44.894 44.614 45.188 3.3655 58 45 2 0 0 0 0.82752 1 8418 8418 0.69038 0.088878 1 100150 + 58719 24846 37096 37115 67582 67582 -0.07310215102529583 YWDIRYKQ 8 Unmodified _YWDIRYKQ_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS UPN47_class_I_Rep_1 2 586.7461547851562 2 586.298373 1170.58219 NaN NaN NaN NaN NaN NaN NaN 20.385 1 24.017 23.517 24.517 3.6319 0 0 0 0.40746 1 2037 2037 0.69038 0 1 58720 5378 37097 37116 67583 67583 0.003725477088437401 YWEKQFKELYH 11 Unmodified _YWEKQFKELYH_ 0 0 0 REV__L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|70|1|anti-sense REV__L1PA7_dup1016|chr2:31896905-31899025:-|4.93063087174441|0.0853468564596603|5.85|151.0|70|1|anti-sense MSMS UPN48_class_I_Rep_1 5 524.261962890625 3 524.261148 1569.76161 NaN NaN NaN NaN NaN NaN NaN 77.967 1 81.489 80.989 81.989 3.5221 0 0 0 0.38417 1 18580 18580 0.094841 0 1 + 58721 29964 37098 37117 67584 67584 -0.0004761279385547823 YWEQVLALL 9 Unmodified _YWEQVLALL_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52 ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MSMS UPN47_class_I_Rep_2 3 567.8137817382812 2 567.813325 1133.6121 NaN NaN NaN NaN NaN NaN NaN 22.328 1 25.752 25.252 26.252 3.4241 0 0 0 0.40038 1 2631 2631 0.6015 0 1 58722 5653 37099 37118 67585 67585 0.050634866541713563 YWEVGFFLG 9 Unmodified _YWEVGFFLG_ 0 0 0 ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000197442.10,MAP3K5,chr6,-,I23.1,136584508,136592172|65|12.32|6|intron;MAP3K5|p.A1077Gfs*2|1|0.07|ENSG00000197442|chr6:136583736-136583737|-/C|frameshift_variant;ENSG00000197442.10,MAP3K5,chr6,-,I21.1,136592615,136601021|43|10.15|7|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|10|intron;ENSG00000197442.10,MAP3K5,chr6,-,I10.1,136651092,136656306|68|9.47|2|intron ENSG00000197442|ENST00000359015|MAP3K5 ENSG00000197442|ENST00000359015|MAP3K5 MULTI-MSMS UPN48_class_I_Rep_3 7 559.287353515625 2 559.271293 1116.52803 0.43734 0.00024459 -3.1843 -0.0017809 -2.7469 -0.0015363 559.2696127565304 63.851 0.15723 67.359 67.262 67.419 3.5083 10 8 2 0 0 0 0.33654 1 14296 14296 11.64 0 1 55159 58723 5371 37100 37119 67586 67586 -0.025570444427330585 YWEVGNLGGVI 11 Unmodified _YWEVGNLGGVI_ 0 0 0 ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF ENST00000547912.1_1_12:56676173-56676410:-|nuORF ENST00000547912.1_1_12:56676173-56676410:-|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 603.8117065429688 2 603.811313 1205.60807 0.54004 0.00032608 -0.17012 -0.00010272 0.36992 0.00022336 604.3124817038264 63.932 0.076897 67.39 67.338 67.415 3.4578 6 4 2 0 0 0 0.65271 1 14418 14418 2.9952 1.3426 1 71298 58724 7383 37101 37120 67587 67587 0.013493971604930266 YWEWNFCLP 9 Unmodified _YWEWNFCLP_ 0 0 0 L1MB8_dup1404|chr2:48478409-48479544:-|2.6743942173245334|0.2327886665242897|3.52|151.0|71|3|anti-sense L1MB8_dup1404|chr2:48478409-48479544:-|2.6743942173245334|0.2327886665242897|3.52|151.0|71|3|anti-sense L1MB8_dup1404|chr2:48478409-48479544:-|2.6743942173245334|0.2327886665242897|3.52|151.0|71|3|anti-sense MSMS UPN47_class_I_Rep_2 3 629.2711181640625 2 629.273509 1256.53247 NaN NaN NaN NaN NaN NaN NaN 43.892 1 47.25 46.75 47.75 3.358 0 0 0 0.40038 1 9099 9099 0.6015 0.14316 1 58725 10946 37102 37121 67588 67588 -0.08553903291453935 YWFFCFTT 8 Unmodified _YWFFCFTT_ 0 0 0 REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|26|1|anti-sense REV__L1MD_dup7331|chr15:68099444-68100091:-|1.6525937428189956|0.0180732316809068|6.51|151.0|26|1|anti-sense MSMS UPN48_class_I_Rep_1 5 558.222412109375 2 557.738771 1113.46299 NaN NaN NaN NaN NaN NaN NaN 117.41 1 121.03 120.53 121.53 3.6215 0 0 0 0.40738 1 28612 28612 0.79363 0 1 + 58726 27280 37103 37122 67589 67589 -0.08920362240223767 YWFFFFQF 8 Unmodified _YWFFFFQF_ 0 0 0 REV__L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|49|1|anti-sense REV__L1MB4_dup6365|chr12:96350362-96351571:+|1.0179887969294132|0.01586028243418|6.0|151.0|49|1|anti-sense MSMS UPN48_class_I_Rep_2 6 616.2825317382812 2 616.284203 1230.55385 NaN NaN NaN NaN NaN NaN NaN 59.212 1 62.699 62.199 63.199 3.4868 0 0 0 0.40746 1 12968 12968 0.69038 0.088878 1 + 58727 25997 37104 37123 67590 67590 -0.052201502004436406 YWFIDTTVH 9 Unmodified _YWFIDTTVH_ 0 0 0 REV__ENST00000603513.1_1_7:130039868-130040375:-|nuORF REV__ENST00000603513.1_1_7:130039868-130040375:-|nuORF MULTI-MSMS UPN47_class_I_Rep_1 2 591.28564453125 2 591.284931 1180.55531 0.40019 0.00023663 0.21866 0.00012929 0.61885 0.00036592 591.2849412322535 61.857 1.0124 65.225 64.91 65.923 3.3681 171 70 4 0 0 0 0.41259 1 14657 14657 7.2892 0.56607 1 586390 + 58728 23222 37105 37124 67591 67591 -0.027745609023668294 YWFLHIPW 8 Unmodified _YWFLHIPW_ 0 0 0 REV__L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|207|3|anti-sense REV__L1PA7_dup1620|chr2:177456751-177460326:+|2.30074154625592|0.0537623862078092|5.42|151.0|207|3|anti-sense MSMS UPN48_class_I_Rep_3 7 581.2992553710938 2 581.297645 1160.58074 NaN NaN NaN NaN NaN NaN NaN 44.177 1 47.816 47.316 48.316 3.6385 0 0 0 0.40738 1 8312 8312 0.79363 0 1 + 58729 30034 37106 37125 67592 67592 0.006869584107334958 YWGEYTEL 8 Unmodified _YWGEYTEL_ 0 0 0 REV__nc|ENSG00000150760|Q14185|DOCK1 REV__nc|ENSG00000150760|Q14185|DOCK1 MSMS UPN46_class_I_Rep_3 1 530.7347412109375 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 20.113 1 20.113 19.613 20.613 0 0 0 0 0.40738 1 2035 2035 0.79363 0 1 + 58730 19640 37107 37126 67593 67593 -0.07242217955990782 YWGFQGWG 8 Unmodified _YWGFQGWG_ 0 0 0 ENST00000379731.4_1_9:33110948-33111104:-|nuORF ENST00000379731.4_1_9:33110948-33111104:-|nuORF ENST00000379731.4_1_9:33110948-33111104:-|nuORF MSMS UPN47_class_I_Rep_1 2 500.71923828125 2 500.719227 999.423902 NaN NaN NaN NaN NaN NaN NaN 20.402 1 24.045 23.545 24.545 3.6436 0 0 0 0.40738 1 2042 2042 0.79363 0 1 58731 6482 37108 37127 67594 67594 -0.07583326479561947 YWGIDEIY 8 Unmodified _YWGIDEIY_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1;ENSG00000182674|ENST00000523207|KCNB2 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MSMS UPN48_class_I_Rep_3 7 529.744873046875 2 529.745108 1057.47566 NaN NaN NaN NaN NaN NaN NaN 117.24 1 120.85 120.35 121.35 3.6124 0 0 0 0.40738 1 27897 27897 0.79363 0 1 58732 3799 37109 37128 67595 67595 -0.05077627576338273 YWGLKASS 8 Unmodified _YWGLKASS_ 0 0 0 MSTB-int_dup381|chr7:11073089-11074199:-|1.4776127284360114|0.0257778519908254|5.84|150.0|55|3|anti-sense MSTB-int_dup381|chr7:11073089-11074199:-|1.4776127284360114|0.0257778519908254|5.84|150.0|55|3|anti-sense MSTB-int_dup381|chr7:11073089-11074199:-|1.4776127284360114|0.0257778519908254|5.84|150.0|55|3|anti-sense MSMS UPN48_class_I_Rep_3 7 456.034423828125 2 456.23471 910.454868 NaN NaN NaN NaN NaN NaN NaN 38.157 1 41.816 41.316 42.316 3.6595 0 0 0 0.40738 1 6523 6523 0.79363 0 1 58733 16574 37110 37129 67596 67596 -0.003941731653412717 YWHCSWVSE 9 Unmodified _YWHCSWVSE_ 0 0 0 ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4 ENSG00000111642|ENST00000544040|CHD4 ENSG00000111642|ENST00000544040|CHD4 MSMS UPN48_class_I_Rep_3 7 599.2130737304688 2 598.745116 1195.47568 NaN NaN NaN NaN NaN NaN NaN 17.541 1 21.105 20.605 21.605 3.5637 0 0 0 0.40038 1 1015 1015 0.6015 0 1 58734 1978 37111 37130 67597 67597 -0.1142395084796135 YWHKGRLV 8 Unmodified _YWHKGRLV_ 0 0 0 L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|74|2|sense L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|74|2|sense L1MA6_dup1842|chr5:116337226-116341335:+|8.16575455188322|0.0951166890497835|6.42|151.0|74|2|sense MSMS UPN46_class_I_Rep_3 1 529.7979736328125 2 529.798343 1057.58213 NaN NaN NaN NaN NaN NaN NaN 17.809 1 17.809 17.309 18.309 0 0 0 0 0.40798 1 1461 1461 0 0 1 58735 9968 37112 37131 67598 67598 0.05564592499490573 YWHNIFFF 8 Unmodified _YWHNIFFF_ 0 0 0 L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|332|3|anti-sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|332|3|anti-sense L1PA7_dup4190|chr5:53625890-53632164:-|2.0836557240426163|0.108794845946586|4.26|151.0|332|3|anti-sense MULTI-MSMS UPN46_class_I_Rep_3 1 587.2796630859375 2 587.279452 1172.54435 0.3139 0.00018435 1.4076 0.00082665 1.7215 0.001011 587.2802113270432 31.715 0.42677 31.715 31.526 31.953 0 40 29 2 0 0 0 0.82752 1 5319 5319 2.5775 0 1 88590 58736 14821 37113 37132 67599 67599 -0.03501918485949318 YWHVKIKSLHV 11 Unmodified _YWHVKIKSLHV_ 0 0 0 REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|41|1|anti-sense REV__L1MD3_dup769|chr2:207581609-207582701:-|1.3964855196913917|0.1700592551092769|3.04|151.0|41|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 470.6068115234375 3 470.60659 1408.79794 0.06379 3.002E-05 -0.070559 -3.3205E-05 -0.0067688 -3.1855E-06 470.6064563318209 54.59 0.82714 58.159 57.577 58.404 3.5694 85 54 2 0 0 0 0.68024 1 11443 11443 0.50596 0.051438 1 168580 + 58737 27490 37114 37133 67600 67600 0.10989308893499583 YWIHSFLRG 9 Unmodified _YWIHSFLRG_ 0 0 0 L1MC5_dup2864|chr3:126457647-126457802:+|2.153039667888184|0.445688188314181|2.27|151.0|12|3|anti-sense L1MC5_dup2864|chr3:126457647-126457802:+|2.153039667888184|0.445688188314181|2.27|151.0|12|3|anti-sense L1MC5_dup2864|chr3:126457647-126457802:+|2.153039667888184|0.445688188314181|2.27|151.0|12|3|anti-sense MSMS UPN47_class_I_Rep_1 2 589.807861328125 2 589.808908 1177.60326 NaN NaN NaN NaN NaN NaN NaN 21.361 1 25.004 24.504 25.504 3.6436 0 0 0 0.4029 1 2304 2304 0 0 1 58738 11681 37115 37134 67601 67601 0.02156557808348225 YWIMFMVC 8 Unmodified _YWIMFMVC_ 0 0 0 REV__L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|66|2|anti-sense REV__L1ME3Cz_dup9355|chr13:99365040-99366106:-|1.1556692680981144|0.2240471754181564|2.37|151.0|66|2|anti-sense MSMS UPN46_class_I_Rep_3 1 546.7394409179688 2 546.739402 1091.46425 NaN NaN NaN NaN NaN NaN NaN 22.32 1 22.32 21.82 22.82 0 0 0 0 0.40798 1 2632 2632 0 0 1 + 58739 28136 37116 37135 67602 67602 -0.07782187467296353 YWINSIFVM 9 Unmodified _YWINSIFVM_ 0 0 0 ENST00000424326.5_1_2:167262092-167297919:-|nuORF;ENSG00000136546|ENST00000643258|SCN7A ENST00000424326.5_1_2:167262092-167297919:-|nuORF ENST00000424326.5_1_2:167262092-167297919:-|nuORF MSMS UPN47_class_I_Rep_3 4 586.777099609375 2 586.794078 1171.5736 NaN NaN NaN NaN NaN NaN NaN 50.435 1 53.661 53.161 54.161 3.2262 0 0 0 0.38299 1 11142 11142 4.756 0.42677 1 58740 2977 37117 37136 67603 67603 -0.005321422519955377 YWIRIAHP 8 Unmodified _YWIRIAHP_ 0 0 0 REV__nc|ENSG00000148120|Q8N6M6-4|AOPEP REV__nc|ENSG00000148120|Q8N6M6-4|AOPEP MSMS UPN48_class_I_Rep_2 6 528.3126831054688 2 528.292894 1054.57123 NaN NaN NaN NaN NaN NaN NaN 89.248 1 92.986 92.486 93.486 3.7379 0 0 0 0.40581 1 21256 21256 2.8892 0.58649 1 + 58741 19577 37118 37137 67604 67604 0.04613190125201072 YWITFVMW 8 Unmodified _YWITFVMW_ 0 0 0 REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|231|1|anti-sense REV__L1PA7_dup2600|chr3:151483516-151489977:+|2.013211040974534|0.054002246913387|5.22|145.0|231|1|anti-sense MSMS UPN47_class_I_Rep_1 2 573.2764892578125 2 573.278063 1144.54157 NaN NaN NaN NaN NaN NaN NaN 18.335 1 21.916 21.416 22.416 3.5806 0 0 0 0.40738 1 1517 1517 0.79363 0.10326 1 + 58742 30044 37119 37138 67605 67605 -0.024915099351346726 YWKCYCWF 8 Unmodified _YWKCYCWF_ 0 0 0 REV__L1ME1_dup23150|chr12:116114534-116115997:+|2.071553262288551|0.0154950624856118|7.06|151.0|91|2|anti-sense REV__L1ME1_dup23150|chr12:116114534-116115997:+|2.071553262288551|0.0154950624856118|7.06|151.0|91|2|anti-sense MSMS UPN47_class_I_Rep_1 2 599.746826171875 2 599.746073 1197.47759 NaN NaN NaN NaN NaN NaN NaN 26.504 1 30.266 29.766 30.766 3.7624 0 0 0 0.40746 1 3801 3801 0.69038 0.088878 1 + 58743 27686 37120 37139 67606 67606 -0.11324613363740355 YWKERHLK 8 Unmodified _YWKERHLK_ 0 0 0 ENSG00000147896|ENST00000276943|IFNK ENSG00000147896|ENST00000276943|IFNK ENSG00000147896|ENST00000276943|IFNK MSMS UPN46_class_I_Rep_3 1 580.32275390625 2 580.322183 1158.62981 NaN NaN NaN NaN NaN NaN NaN 71.447 1 71.447 70.947 71.947 0 0 0 0 0.40798 1 16459 16459 0 0 1 58744 3489 37121 37140 67607 67607 0.05684246699684081 YWKFFFFF 8 Unmodified _YWKFFFFF_ 0 0 0 L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|147|2|anti-sense L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|147|2|anti-sense L1MA7_dup6321|chr12:9083439-9086260:+|2.212396267234728|0.4593804182187144|2.27|151.0|147|2|anti-sense MSMS UPN48_class_I_Rep_3 7 616.300537109375 2 616.302396 1230.59024 NaN NaN NaN NaN NaN NaN NaN 56.005 1 59.56 59.06 60.06 3.5554 0 0 0 0.40738 1 11927 11927 0.79363 0 1 58745 10025 37122 37141 67608 67608 -0.015832733037541402 YWKLKRKS 8 Unmodified _YWKLKRKS_ 0 0 0 ENSG00000102221|ENST00000614628|JADE3 ENSG00000102221|ENST00000614628|JADE3 ENSG00000102221|ENST00000614628|JADE3 MSMS UPN46_class_I_Rep_3 1 554.8342895507812 2 554.834926 1107.6553 NaN NaN NaN NaN NaN NaN NaN 86.974 1 86.974 86.474 87.474 0 0 0 0 0.40746 1 20817 20817 0.69038 0 1 58746 1606 37123 37142 67609 67609 0.1057772122210281 YWKLNEHR 8 Unmodified _YWKLNEHR_ 0 0 0 L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|1|1|sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|1|1|sense L1MC4a_dup7361|chr12:94365796-94367767:+|1.8799553028741969|0.4944715453685812|1.93|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 573.2962036132812 2 573.296165 1144.57778 NaN NaN NaN NaN NaN NaN NaN 79.524 1 79.524 79.024 80.024 0 0 0 0 0.40753 1 18687 18687 0.6015 0 1 58747 11605 37124 37143 67610 67610 0.011270832859281654 YWKTFYMCL 9 Unmodified _YWKTFYMCL_ 0 0 0 L1MA5A_dup352|chr2:44465565-44466966:+|1.0260996246817558|0.022660477476834|5.5|151.0|72|2|anti-sense L1MA5A_dup352|chr2:44465565-44466966:+|1.0260996246817558|0.022660477476834|5.5|151.0|72|2|anti-sense L1MA5A_dup352|chr2:44465565-44466966:+|1.0260996246817558|0.022660477476834|5.5|151.0|72|2|anti-sense MSMS UPN46_class_I_Rep_3 1 627.7886352539062 2 627.787938 1253.56132 NaN NaN NaN NaN NaN NaN NaN 48.409 1 48.409 47.909 48.909 0 0 0 0 0.39518 1 10084 10084 1.8442 0 1 58748 9947 37125 37144 67611 67611 -0.055315019866839066 YWLFFGFL 8 Unmodified _YWLFFGFL_ 0 0 0 HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|58|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|58|3|anti-sense HAL1M8_dup1307|chr10:68764735-68765602:-|1.7776322509015996|0.3233072722514301|2.46|151.0|58|3|anti-sense MSMS UPN48_class_I_Rep_2 6 546.7816772460938 2 546.781296 1091.54804 NaN NaN NaN NaN NaN NaN NaN 20.922 1 24.57 24.07 25.07 3.648 0 0 0 0.40738 1 1887 1887 0.79363 0 1 58749 7931 37126 37145 67612 67612 0.005927512878997732 YWLFKFLP 8 Unmodified _YWLFKFLP_ 0 0 0 L1ME1_dup4815|chr2:195724492-195725465:+|1.3873536081814568|0.3665989051656819|1.92|151.0|46|1|anti-sense L1ME1_dup4815|chr2:195724492-195725465:+|1.3873536081814568|0.3665989051656819|1.92|151.0|46|1|anti-sense L1ME1_dup4815|chr2:195724492-195725465:+|1.3873536081814568|0.3665989051656819|1.92|151.0|46|1|anti-sense MSMS UPN48_class_I_Rep_2 6 557.30908203125 2 557.310221 1112.60589 NaN NaN NaN NaN NaN NaN NaN 48.741 1 52.459 51.959 52.959 3.7175 0 0 0 0.40738 1 9772 9772 0.79363 0 1 58750 12412 37127 37146 67613 67613 0.054090132133069346 YWLLLPIG 8 Unmodified _YWLLLPIG_ 0 0 0 REV__ENST00000472467.1_1_1:155979333-155981702:-|nuORF REV__ENST00000472467.1_1_1:155979333-155981702:-|nuORF MSMS UPN48_class_I_Rep_2 6 487.7897033691406 2 487.789121 973.56369 NaN NaN NaN NaN NaN NaN NaN 87.302 1 91.019 90.519 91.519 3.7171 0 0 0 0.40798 1 20770 20770 0 0 1 + 58751 19978 37128 37147 67614 67614 0.07585037804960848 YWLLSLSN 8 Unmodified _YWLLSLSN_ 0 0 0 L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense;L1MC2_dup5187|chr15:71908614-71909564:-|1.9839520650165572|0.0875154808815053|4.5|151.0|53|2|anti-sense;L1MC2_dup5239|chr15:99815388-99816368:+|1.0315127346745627|0.1338845990204644|2.95|151.0|68|3|anti-sense;L1MC2_dup3027|chr8:106695822-106696728:-|1.1152714566669997|0.0552045697100665|4.34|151.0|56|2|anti-sense L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense L1MC1_dup11724|chr17:20138282-20138871:-|1.617078546910053|0.0057495503401843|8.14|151.0|21|1|anti-sense MSMS UPN48_class_I_Rep_3 7 498.2641906738281 2 498.263468 994.512382 NaN NaN NaN NaN NaN NaN NaN 33.989 1 37.669 37.169 38.169 3.6797 0 0 0 0.40738 1 5352 5352 0.79363 0 1 58752 11102 37129 37148 67615 67615 0.014906690402426648 YWLPSHIV 8 Unmodified _YWLPSHIV_ 0 0 0 REV__MLT1K_dup13337|chr15:66456353-66456904:-|1.4497059595056223|0.0441007942498743|5.04|150.0|31|2|anti-sense REV__MLT1K_dup13337|chr15:66456353-66456904:-|1.4497059595056223|0.0441007942498743|5.04|150.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 507.7673034667969 2 507.774003 1013.53345 NaN NaN NaN NaN NaN NaN NaN 53.259 1 56.585 56.085 57.085 3.3266 0 0 0 0.38221 1 11945 11945 14.582 0 1 + 58753 31787 37130 37149 67616 67616 0.02722679139765205 YWLPSHIV 8 Unmodified _YWLPSHIV_ 0 0 0 REV__MLT1K_dup13337|chr15:66456353-66456904:-|1.4497059595056223|0.0441007942498743|5.04|150.0|31|2|anti-sense REV__MLT1K_dup13337|chr15:66456353-66456904:-|1.4497059595056223|0.0441007942498743|5.04|150.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 507.76727294921875 2 507.774003 1013.53345 NaN NaN NaN NaN NaN NaN NaN 53.28 1 56.607 56.107 57.107 3.3266 0 0 0 0.39624 1 11952 11952 9.3474 0 1 + 58754 31787 37130 37149 67617 67617 0.02722679139765205 YWLRKKRAL 9 Unmodified _YWLRKKRAL_ 0 0 0 REV__ENST00000319933.6_1_5:102612416-102612584:+|nuORF REV__ENST00000319933.6_1_5:102612416-102612584:+|nuORF MSMS UPN48_class_I_Rep_2 6 617.3829345703125 2 617.382574 1232.7506 NaN NaN NaN NaN NaN NaN NaN 28.646 1 32.277 31.777 32.777 3.6311 0 0 0 0.4029 1 3965 3965 0 0 1 + 58755 21732 37131 37150 67618 67618 0.14353074413179456 YWLVGLLS 8 Unmodified _YWLVGLLS_ 0 0 0 REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|67|1|anti-sense REV__L1MC2_dup866|chr2:168485177-168486666:-|1.2831944279325571|0.0052259285208647|7.94|150.0|67|1|anti-sense MSMS UPN46_class_I_Rep_3 1 475.4085693359375 2 475.770929 949.527304 NaN NaN NaN NaN NaN NaN NaN 66.034 1 66.034 65.534 66.534 0 0 0 0 0.40738 1 14960 14960 0.79363 0 1 + 58756 26697 37132 37151 67619 67619 0.05052160908246606 YWLVHRNKQ 9 Unmodified _YWLVHRNKQ_ 0 0 0 MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|126|1|anti-sense MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|126|1|anti-sense MER41-int_dup1236|chr12:26753579-26756789:+|1.574062252413125|0.0290272169954243|5.76|151.0|126|1|anti-sense MSMS UPN48_class_I_Rep_2 6 622.337646484375 2 622.338364 1242.66217 NaN NaN NaN NaN NaN NaN NaN 62.274 1 65.748 65.248 66.248 3.4738 0 0 0 0.40038 1 13903 13903 0.6015 0 1 58757 15952 37133 37152 67620 67620 0.050550341027019385 YWLYKVIQ 8 Unmodified _YWLYKVIQ_ 0 0 0 L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|34|2|sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|34|2|sense L1MDa_dup1387|chr3:121866754-121868316:+|1.1690464092402697|0.0058936782331943|7.63|151.0|34|2|sense MSMS UPN47_class_I_Rep_2 3 556.8128662109375 2 556.810585 1111.60662 NaN NaN NaN NaN NaN NaN NaN 67.148 1 70.411 69.911 70.911 3.2636 0 0 0 0.40625 1 16176 16176 2.3027 0 1 58758 12092 37134 37153 67621 67621 0.055278078623587135 YWMHVQNTF 9 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ YWM(1)HVQNTF YWM(82)HVQNTF 0 0 1 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN48_class_I_Rep_1 5 621.2742309570312 2 621.274041 1240.53353 0.4211 0.00026162 -0.13137 -8.1617E-05 0.28973 0.00018 621.2739685109647 46.932 0.64375 50.451 50.132 50.776 3.5192 97 40 3 0 0 0 0.0059033 1 9220 9220 81.89 54.261 1 276520 58759 2091 37135 37154 67622 67622 70 -0.07711688922563553 YWMHVQNTF 9 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ YWM(1)HVQNTF YWM(54)HVQNTF 0 0 1 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN48_class_I_Rep_2 6 621.2745971679688 2 621.274041 1240.53353 0.39933 0.00024809 -0.19556 -0.0001215 0.20377 0.0001266 621.2739798006497 46.645 0.76153 50.395 50.056 50.818 3.7494 104 49 3 0 0 0 0.037922 2 9101 9101;9139 53.833 37.684 1 237470 58760 2091 37135 37154 67623;67624 67623 70 -0.07711688922563553 YWMHVQNTF 9 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ YWM(1)HVQNTF YWM(46)HVQNTF 0 0 1 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS UPN48_class_I_Rep_3 7 621.2742309570312 2 621.274041 1240.53353 0.50999 0.00031684 -0.051194 -3.1806E-05 0.45879 0.00028504 621.2739036081298 46.84 0.66789 50.476 50.16 50.828 3.6363 81 42 3 0 0 0 0.057664 1 9136 9136 45.7 33.168 1 217100 58761 2091 37135 37154 67625 67625 70 -0.07711688922563553 YWMKRILM 8 Unmodified _YWMKRILM_ 0 0 0 REV__L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|69|1|sense REV__L1PB2_dup1346|chr8:70564753-70571419:+|1.0795068731640372|0.1037520185609947|3.38|151.0|69|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 571.3084716796875 2 570.806465 1139.59838 -0.44099 -0.00025172 -0.06249 -3.567E-05 -0.50348 -0.00028739 570.8057323394693 12.576 0.07396 15.951 15.929 16.003 3.3753 11 9 2 0 0 0 0.82752 1 107 107 0 0 1 21805 + 58762 30521 37136 37155 67626 67626 0.034162143497269426 YWMKYLTLA 9 Unmodified _YWMKYLTLA_ 0 0 0 REV__L1ME1_dup10184|chr5:109401888-109402798:+|1.594330332408472|0.0080356891524595|7.63|151.0|18|2|sense REV__L1ME1_dup10184|chr5:109401888-109402798:+|1.594330332408472|0.0080356891524595|7.63|151.0|18|2|sense MSMS UPN47_class_I_Rep_3 4 595.1551513671875 2 594.809728 1187.6049 NaN NaN NaN NaN NaN NaN NaN 12.025 1 15.401 14.901 15.901 3.3753 0 0 0 0.4007 1 3 3 0.52476 0 1 + 58763 27557 37137 37156 67627 67627 0.01860430782107869 YWNYKVLAF 9 Unmodified _YWNYKVLAF_ 0 0 0 L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|29|2|anti-sense L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|29|2|anti-sense L1MC2_dup2735|chr7:158813077-158813561:+|2.638706092524329|0.0315168595854249|6.39|151.0|29|2|anti-sense MSMS UPN46_class_I_Rep_3 1 402.2057800292969 3 401.878087 1202.61243 NaN NaN NaN NaN NaN NaN NaN 23.563 1 23.563 23.063 24.063 0 0 0 0 0.40038 1 2976 2976 0.26902 0.1097 1 58764 11242 37138 37157 67628 67628 0.01922906374034028 YWPLDLYI 8 Unmodified _YWPLDLYI_ 0 0 0 REV__ENSG00000174130|ENST00000508254|TLR6 REV__ENSG00000174130|ENST00000508254|TLR6 MULTI-MSMS UPN48_class_I_Rep_1 5 541.78173828125 2 541.781493 1081.54843 0.38222 0.00020708 -0.26053 -0.00014115 0.12168 6.5926E-05 541.78127246001 47.772 0.83982 51.294 51.098 51.938 3.5219 93 60 2 0 0 0 0.82752 1 9478 9478 5.2307 0 1 247760 + 58765 20508 37139 37158 67629 67629 0.010921262170768387 YWPLGIVK 8 Unmodified _YWPLGIVK_ 0 0 0 MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|64|3|sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|64|3|sense MER41-int_dup423|chr4:139713087-139715323:-|3.5107534276605525|0.3701551378105598|3.25|151.0|64|3|sense MSMS UPN47_class_I_Rep_2 3 488.284912109375 2 488.286746 974.558939 NaN NaN NaN NaN NaN NaN NaN 85.927 1 89.36 88.86 89.86 3.4329 0 0 0 0.40581 1 21376 21376 2.8892 0 1 58766 15961 37140 37159 67630 67630 0.07064153662179251 YWPQKYWA 8 Unmodified _YWPQKYWA_ 0 0 0 nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP nc|ENSG00000185808|P57054-3|PIGP nc|ENSG00000185808|P57054-3|PIGP MULTI-MSMS UPN47_class_I_Rep_2 3 571.2764892578125 2 571.276909 1140.53927 0.046081 2.6325E-05 -1.1635 -0.00066467 -1.1174 -0.00063835 571.2762194025406 32.473 0.53576 35.928 35.677 36.213 3.4547 49 36 2 0 0 0 0.82752 1 5638 5638 0.79363 0.10326 1 70872 58767 5121 37141 37160 67631 67631 -0.025382223485848954 YWPSRHLFG 9 Unmodified _YWPSRHLFG_ 0 0 0 REV__HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|286|1|anti-sense REV__HERV3-int_dup110|chr7:138557290-138565603:-|4.002686368377956|0.4444164881240359|3.17|151.0|286|1|anti-sense MSMS UPN48_class_I_Rep_3 7 581.7908325195312 2 581.793258 1161.57196 NaN NaN NaN NaN NaN NaN NaN 72.378 1 75.905 75.405 76.405 3.5266 0 0 0 0.39326 1 16865 16865 2.3027 0.24298 1 + 58768 23574 37142 37161 67632 67632 -0.0023601522575518175 YWPVCFFF 8 Unmodified _YWPVCFFF_ 0 0 0 L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|132|1|anti-sense L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|132|1|anti-sense L1MA2_dup6053|chr13:41207332-41210462:-|1.9129631066520851|0.2977557184764739|2.68|151.0|132|1|anti-sense MSMS UPN48_class_I_Rep_3 7 554.7515869140625 2 554.751682 1107.48881 NaN NaN NaN NaN NaN NaN NaN 115.79 1 119.43 118.93 119.93 3.6433 0 0 0 0.40581 1 27560 27560 2.8892 0 1 58769 9413 37143 37162 67633 67633 -0.060634679979557404 YWPVTVLIL 9 Unmodified _YWPVTVLIL_ 0 0 0 ENSG00000147160|ENST00000276101|AWAT2 ENSG00000147160|ENST00000276101|AWAT2 ENSG00000147160|ENST00000276101|AWAT2 MSMS UPN48_class_I_Rep_1 5 552.3267211914062 2 552.328611 1102.64267 NaN NaN NaN NaN NaN NaN NaN 70.498 1 73.958 73.458 74.458 3.4598 0 0 0 0.1074 1 16433 16433 23.148 0 1 58770 3463 37144 37163 67634 67634 0.09545265039241713 YWPVVFFLS 9 Unmodified _YWPVVFFLS_ 0 0 0 L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|174|3|anti-sense L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|174|3|anti-sense L1MA3_dup7172|chr13:75612970-75616042:-|1.0552143977510946|0.1659415872537823|2.67|151.0|174|3|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 579.7533569335938 2 579.305136 1156.59572 0.3901 0.00022599 -0.65141 -0.00037737 -0.26131 -0.00015138 579.3047231991819 68.084 0.57053 71.354 71.13 71.701 3.2696 62 47 2 0 0 0 0.063537 1 16421 16421 30.225 0 1 94896 58771 9621 37145 37164 67635 67635 0.023684054880959593 YWQIVCRF 8 Unmodified _YWQIVCRF_ 0 0 0 REV__L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense REV__L1MB3_dup15004|chr17:64470393-64470496:+|1.3682558668323832|0.083941094481125|4.03|150.0|5|1|anti-sense MSMS UPN47_class_I_Rep_1 2 557.7800903320312 2 557.778762 1113.54297 NaN NaN NaN NaN NaN NaN NaN 50.599 1 54.227 53.727 54.727 3.6285 0 0 0 0.4044 1 11109 11109 4.756 0.42677 1 + 58772 25829 37146 37165 67636 67636 -0.009258758463602135 YWRLCWKL 8 Unmodified _YWRLCWKL_ 0 0 0 ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 MSMS UPN46_class_I_Rep_3 1 584.308349609375 2 584.310229 1166.60591 NaN NaN NaN NaN NaN NaN NaN 89.37 1 89.37 88.87 89.87 0 0 0 0 0.40625 1 21497 21497 2.3027 0.24298 1 58773 3246 37147 37166 67637 67637 0.02926689941659788 YWSRKKRA 8 Unmodified _YWSRKKRA_ 0 0 0 REV__ENST00000489985.1_1_1:46661446-46663526:-|nuORF REV__ENST00000489985.1_1_1:46661446-46663526:-|nuORF MSMS UPN47_class_I_Rep_1 2 547.7327880859375 2 547.814525 1093.6145 NaN NaN NaN NaN NaN NaN NaN 116.06 1 119.65 119.15 120.15 3.5943 0 0 0 0.40738 1 28734 28734 0.79363 0 1 + 58774 17963 37148 37167 67638 67638 0.07143379902527158 YWSRKRRRRRL 11 Unmodified _YWSRKRRRRRL_ 0 0 0 REV__Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|93|2|anti-sense REV__Tigger2_dup1262|chr7:37854014-37856166:-|1.367505614363834|0.0138928312793966|6.62|150.0|93|2|anti-sense MULTI-SECPEP UPN46_class_I_Rep_3 1 544.8154907226562 3 544.997586 1631.97093 -0.22481 -0.00012252 -2.264 -0.0012339 -2.4888 -0.0013564 544.9961350795023 13.759 0.057913 13.759 13.717 13.775 0 6 4 2 0 0 0 22.551 1 459 459 0 0 1 14195 + 58775 32627 37149 37168 67639 67639 0.1802211279327821 YWTFRKMF 8 Unmodified _YWTFRKMF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|4|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|9|intron;ENSG00000196367.14,TRRAP,chr7,+,I21.1,98915889,98917422|26|4.0|8|intron;ENSG00000196367.14,TRRAP,chr7,+,I70.1,99004416,99005130|36|7.2|1|intron nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS UPN47_class_I_Rep_3 4 589.7920532226562 2 589.794412 1177.57427 NaN NaN NaN NaN NaN NaN NaN 38.735 1 41.973 41.473 42.473 3.238 0 0 0 0.40746 1 7575 7575 0.69038 0 1 58776 5298 37150 37169 67640 67640 -0.007413028122982723 YWTKWYNN 8 Unmodified _YWTKWYNN_ 0 0 0 nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 nc|ENSG00000107593|Q9P0L9-4|PKD2L1 nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MSMS UPN47_class_I_Rep_3 4 587.7702026367188 2 587.769448 1173.52434 NaN NaN NaN NaN NaN NaN NaN 25.355 1 28.706 28.206 29.206 3.3509 0 0 0 0.40604 1 3552 3552 2.5775 0.27475 1 58777 1823 37151 37170 67641 67641 -0.055477142165727855 YWVEKKER 8 Unmodified _YWVEKKER_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS UPN47_class_I_Rep_2 3 569.3035278320312 2 569.306198 1136.59784 NaN NaN NaN NaN NaN NaN NaN 31.345 1 34.814 34.314 35.314 3.4691 0 0 0 0.4044 1 5293 5293 4.756 0.42677 1 58778 3707 37152 37171 67642 67642 0.035008342259061465 YWVIKYVH 8 Unmodified _YWVIKYVH_ 0 0 0 L1ME3A_dup9733|chr10:75584971-75585657:-|2.600245703878346|0.0071818815795301|8.5|150.0|35|2|anti-sense L1ME3A_dup9733|chr10:75584971-75585657:-|2.600245703878346|0.0071818815795301|8.5|150.0|35|2|anti-sense L1ME3A_dup9733|chr10:75584971-75585657:-|2.600245703878346|0.0071818815795301|8.5|150.0|35|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 554.303466796875 2 554.302927 1106.5913 0.49736 0.00027569 -1.2028 -0.00066673 -0.70547 -0.00039105 554.3027421176466 31.597 0.066483 35.238 35.223 35.29 3.641 9 6 2 0 0 0 0.72333 1 4777 4777 0.79363 0 1 30335 58779 12690 37153 37172 67643 67643 0.042269410651670114 YWVVHLFL 8 Unmodified _YWVVHLFL_ 0 0 0 L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 538.8026123046875 2 538.80002 1075.58549 NaN NaN NaN NaN NaN NaN NaN 87.982 1 91.639 91.139 92.139 3.6563 0 0 0 0.37152 1 21998 21998 17.087 0.93744 1 58780 12809 37154 37173 67644 67644 0.050718425535023925 YWVVHLFL 8 Unmodified _YWVVHLFL_ 0 0 0 L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 538.8026733398438 2 538.80002 1075.58549 NaN NaN NaN NaN NaN NaN NaN 88.155 1 91.602 91.102 92.102 3.4471 0 0 0 0.37152 1 21922 21922 17.087 2.5049 1 58781 12809 37154 37173 67645 67645 0.050718425535023925 YWVVHLFL 8 Unmodified _YWVVHLFL_ 0 0 0 L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_2 3 538.7999877929688 2 538.80002 1075.58549 NaN NaN NaN NaN NaN NaN NaN 88.191 1 91.638 91.138 92.138 3.4471 0 0 0 0.39167 1 21932 21932 11.114 1.767 1 58782 12809 37154 37173 67646 67646 0.050718425535023925 YWVVHLFL 8 Unmodified _YWVVHLFL_ 0 0 0 L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense L1ME3E_dup4182|chr18:47145206-47145949:+|1.2160115401116507|0.1352046145010128|3.17|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_3 4 538.802490234375 2 538.80002 1075.58549 NaN NaN NaN NaN NaN NaN NaN 88.437 1 91.825 91.325 92.325 3.3873 0 0 0 0.37152 1 22180 22180 17.087 2.5049 1 58783 12809 37154 37173 67647 67647 0.050718425535023925 YWVYGMFIY 9 Unmodified _YWVYGMFIY_ 0 0 0 REV__L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|95|1|anti-sense REV__L1MA6_dup1350|chr4:102709452-102712213:+|4.703276546848608|0.0802095506189264|5.87|151.0|95|1|anti-sense MSMS UPN47_class_I_Rep_3 4 621.2900390625 2 621.288628 1240.5627 NaN NaN NaN NaN NaN NaN NaN 43.376 1 46.618 46.118 47.118 3.2419 0 0 0 0.40038 1 8995 8995 0.6015 0 1 + 58784 25435 37155 37174 67648 67648 -0.04795544626267656 YWWGDYSDI 9 Unmodified _YWWGDYSDI_ 0 0 0 MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|9|1|sense MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|9|1|sense MER57A-int_dup366|chr3:193602053-193604578:-|1.4294159381617264|0.0109154614167221|7.03|151.0|9|1|sense MSMS UPN48_class_I_Rep_3 7 602.7496948242188 2 602.750921 1203.48729 NaN NaN NaN NaN NaN NaN NaN 36.444 1 40.111 39.611 40.611 3.6667 0 0 0 0.39428 1 6033 6033 2.0598 0.21551 1 58785 16119 37156 37175 67649 67649 -0.10631430553007704 YWWLFNYL 8 Unmodified _YWWLFNYL_ 0 0 0 REV__L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|127|3|anti-sense REV__L1M3f_dup523|chr12:9862601-9864900:+|1.6252444106393606|0.414097444555892|1.97|151.0|127|3|anti-sense MSMS UPN48_class_I_Rep_2 6 602.7973022460938 2 602.794935 1203.57532 NaN NaN NaN NaN NaN NaN NaN 65.502 1 68.981 68.481 69.481 3.4792 0 0 0 0.39624 1 14893 14893 9.3474 1.4373 1 + 58786 24339 37157 37176 67650 67650 -0.018327651717072513 YWWLLLPV 8 Unmodified _YWWLLLPV_ 0 0 0 ENSG00000132874|ENST00000255226|SLC14A2;nc|ENSG00000132874|Q15849-2|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 ENSG00000132874|ENST00000255226|SLC14A2 MSMS UPN47_class_I_Rep_1 2 545.3084716796875 2 545.310221 1088.60589 NaN NaN NaN NaN NaN NaN NaN 111 1 114.59 114.09 115.09 3.5835 0 0 0 0.40738 1 27370 27370 0.79363 0.10326 1 58787 2781 37158 37177 67651 67651 0.06513013213316299 YWWNKYVD 8 Unmodified _YWWNKYVD_ 0 0 0 REV__ENST00000359165.5_1_12:19609713-19609968:-|nuORF REV__ENST00000359165.5_1_12:19609713-19609968:-|nuORF MSMS UPN47_class_I_Rep_3 4 587.2735595703125 2 587.271824 1172.5291 NaN NaN NaN NaN NaN NaN NaN 15.131 1 18.496 17.996 18.996 3.3659 0 0 0 0.40746 1 714 714 0.69038 0.16561 1 + 58788 21888 37159 37178 67652 67652 -0.05026830073825295 YWYEFRYIDQW 11 Unmodified _YWYEFRYIDQW_ 0 0 0 L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|70|1|sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|70|1|sense L1PA16_dup1742|chr2:184645674-184652451:+|7.299934368776881|0.0174628290937363|8.71|151.0|70|1|sense MSMS UPN46_class_I_Rep_3 1 556.9210205078125 3 556.920903 1667.74088 NaN NaN NaN NaN NaN NaN NaN 84.731 1 84.731 84.231 85.231 0 0 0 0 0.38417 1 20175 20175 0 0 1 58789 14063 37160 37179 67653 67653 -0.06628203173522706 YWYLFLCM 8 Unmodified _YWYLFLCM_ 0 0 0 REV__L1PA10_dup6864|chr20:60195422-60199551:-|1.0475448070377726|0.0182796678825509|5.84|150.0|254|3|anti-sense REV__L1PA10_dup6864|chr20:60195422-60199551:-|1.0475448070377726|0.0182796678825509|5.84|150.0|254|3|anti-sense MSMS UPN47_class_I_Rep_1 2 569.7577514648438 2 569.758649 1137.50275 NaN NaN NaN NaN NaN NaN NaN 13.312 1 16.769 16.269 17.269 3.457 0 0 0 0.40738 1 298 298 0.79363 0 1 + 58790 28988 37161 37180 67654 67654 -0.06050558561150865 YWYRHWVK 8 Unmodified _YWYRHWVK_ 0 0 0 L1MC3_dup778|chr1:246196769-246197888:+|1.109321092667561|0.0140276737845883|6.31|149.0|43|3|sense L1MC3_dup778|chr1:246196769-246197888:+|1.109321092667561|0.0140276737845883|6.31|149.0|43|3|sense L1MC3_dup778|chr1:246196769-246197888:+|1.109321092667561|0.0140276737845883|6.31|149.0|43|3|sense MSMS UPN48_class_I_Rep_1 5 619.318359375 2 619.3169 1236.61925 NaN NaN NaN NaN NaN NaN NaN 67.093 1 70.545 70.045 71.045 3.4516 0 0 0 0.40746 1 15392 15392 0.69038 0.088878 1 58791 11373 37162 37181 67655 67655 0.010402640452639389 YYAKKKRRH 9 Unmodified _YYAKKKRRH_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS UPN46_class_I_Rep_3 1 625.3656005859375 2 625.367456 1248.72036 0.68211 0.00042657 -2.4176 -0.0015119 -1.7355 -0.0010853 625.365667460831 95.433 0.52507 95.433 95.172 95.697 0 90 48 3 0 0 0 0.48643 1 23110 23110 2.0598 0.21551 1 6362900 58792 3768 37163 37182 67656 67656 0.10594715747993178 YYAKPKVSQ 9 Unmodified _YYAKPKVSQ_ 0 0 0 REV__L1M4_dup6026|chr5:141539573-141540106:-|1.2573883879721328|0.0175923179837017|6.16|151.0|11|2|sense REV__L1M4_dup6026|chr5:141539573-141540106:-|1.2573883879721328|0.0175923179837017|6.16|151.0|11|2|sense MSMS UPN46_class_I_Rep_3 1 542.2843017578125 2 542.295299 1082.57605 NaN NaN NaN NaN NaN NaN NaN 54 1 54 53.5 54.5 0 0 0 0 0.39428 1 11661 11661 2.0598 0 1 + 58793 24439 37164 37183 67657 67657 0.038060294773458736 YYALAAAAAT 10 Unmodified _YYALAAAAAT_ 0 0 0 REV__nc|ENSG00000102145|P15976-2|GATA1 REV__nc|ENSG00000102145|P15976-2|GATA1 MSMS UPN48_class_I_Rep_3 7 493.2530822753906 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 70.765 1 74.284 73.784 74.784 3.5185 0 0 0 0.53105 1 16391 16391 6.7232 0.51738 1 + 58794 18189 37165 37184 67658 67658 -0.0012192133945063688 YYCFAFWH 8 Unmodified _YYCFAFWH_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense MSMS UPN47_class_I_Rep_2 3 568.7364501953125 2 568.736563 1135.45857 NaN NaN NaN NaN NaN NaN NaN 115.45 1 118.96 118.46 119.46 3.5039 0 0 0 0.40738 1 28146 28146 0.79363 0 1 58795 11507 37166 37185 67659 67659 -0.10373826663135333 YYCFAFWH 8 Unmodified _YYCFAFWH_ 0 0 0 L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense L1MC4_dup5477|chr3:167641743-167643669:+|1.3744161136745083|0.0147120263943772|6.55|150.0|91|1|anti-sense MSMS UPN48_class_I_Rep_1 5 568.3580932617188 2 568.736563 1135.45857 NaN NaN NaN NaN NaN NaN NaN 113.27 1 116.9 116.4 117.4 3.6314 0 0 0 0.40738 1 27511 27511 0.79363 0.10326 1 58796 11507 37166 37185 67660 67660 -0.10373826663135333 YYCFILFLR 9 Unmodified _YYCFILFLR_ 0 0 0 REV__L1ME3G_dup5960|chr6:34318298-34318731:-|1.0795068731640372|0.132145453365581|3.03|151.0|28|2|anti-sense REV__L1ME3G_dup5960|chr6:34318298-34318731:-|1.0795068731640372|0.132145453365581|3.03|151.0|28|2|anti-sense MSMS UPN48_class_I_Rep_1 5 619.326904296875 2 619.325545 1236.63654 NaN NaN NaN NaN NaN NaN NaN 44.384 1 47.897 47.397 48.397 3.5132 0 0 0 0.40038 1 8442 8442 0.6015 0 1 + 58797 28199 37167 37186 67661 67661 0.027684235360538878 YYCHIVPLS 9 Unmodified _YYCHIVPLS_ 0 0 0 REV__L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|40|3|anti-sense REV__L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|40|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 547.7699584960938 2 547.770603 1093.52665 0.51388 0.00028149 -0.54349 -0.00029771 -0.029613 -1.6221E-05 547.7703554683019 65.634 0.47879 69.113 68.993 69.472 3.4792 51 32 2 0 0 0 0.40174 1 14934 14934 7.9102 0 1 84298 + 58798 27205 37168 37187 67662 67662 -0.016370018031238942 YYCHIVPLS 9 Unmodified _YYCHIVPLS_ 0 0 0 REV__L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|40|3|anti-sense REV__L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|40|3|anti-sense MSMS UPN48_class_I_Rep_3 7 547.7699584960938 2 547.770603 1093.52665 NaN NaN NaN NaN NaN NaN NaN 65.549 1 69.056 68.556 69.556 3.5077 0 0 0 0.35339 1 14822 14822 7.9102 0 1 + 58799 27205 37168 37187 67663 67663 -0.016370018031238942 YYCHIVPLS 9 Unmodified _YYCHIVPLS_ 0 0 0 REV__L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|40|3|anti-sense REV__L1MCa_dup4583|chrX:136699463-136700241:+|1.125512539975586|0.007882868848739|7.16|151.0|40|3|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 547.770603 1093.52665 0.54492 0.00029849 -0.86235 -0.00047237 -0.31743 -0.00017388 547.7701085696302 65.866 0.33856 69.317 69.032 69.371 3.4516 0.10198 -0.00022256 NaN 7.9102 29 22 2 NaN NaN NaN NaN 0 NaN NaN 0 134100 + 58800 27205 37168 37187 -0.016370018031238942 YYCIHYAIY 9 Unmodified _YYCIHYAIY_ 0 0 0 L1PB1_dup1567|chr2:168614419-168618499:+|6.382407256203527|0.028979919270806|7.78|151.0|153|1|anti-sense L1PB1_dup1567|chr2:168614419-168618499:+|6.382407256203527|0.028979919270806|7.78|151.0|153|1|anti-sense L1PB1_dup1567|chr2:168614419-168618499:+|6.382407256203527|0.028979919270806|7.78|151.0|153|1|anti-sense MULTI-SECPEP UPN48_class_I_Rep_2 6 604.2677612304688 2 604.775885 1207.53722 0.44802 0.00027095 2.6099 0.0015784 3.0579 0.0018493 604.7768710186425 38.247 0.25085 41.963 41.789 42.04 3.7164 27 22 2 0 0 0 0.12182 1 6627 6627 5.2307 0.47466 1 101260 58801 15054 37169 37188 67664 67664 -0.058250191486877156 YYCIYIQR 8 Unmodified _YYCIYIQR_ 0 0 0 L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|37|1|sense L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|37|1|sense L1MB5_dup447|chr1:174307283-174310719:-|1.4345795938952783|0.0621491860003789|4.53|150.0|37|1|sense MSMS UPN47_class_I_Rep_1 2 561.2755126953125 2 561.276052 1120.53755 NaN NaN NaN NaN NaN NaN NaN 50.518 1 54.146 53.646 54.646 3.6285 0 0 0 0.40738 1 11084 11084 0.79363 0 1 58802 10621 37170 37189 67665 67665 -0.01789599428866495 YYCLTKYA 8 Unmodified _YYCLTKYA_ 0 0 0 REV__ENST00000537760.5_1_11:14300266-14300353:-|nuORF REV__ENST00000537760.5_1_11:14300266-14300353:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 512.744140625 2 512.744053 1023.47355 -0.23785 -0.00012196 -0.058807 -3.0153E-05 -0.29666 -0.00015211 512.7438447951916 16.528 0.31576 16.528 16.398 16.713 0 44 36 2 0 0 0 0.82752 1 1138 1138 0.79363 0 1 34164 + 58803 22901 37171 37190 67666 67666 -0.03724379585810311 YYCSVKVSVL 10 Unmodified _YYCSVKVSVL_ 0 0 0 REV__ENSG00000156273.16,BACH1,chr21,+,I13.1,29329694,29342398|41|8.47|1|intron REV__ENSG00000156273.16,BACH1,chr21,+,I13.1,29329694,29342398|41|8.47|1|intron MSMS UPN48_class_I_Rep_1 5 580.804443359375 2 580.804642 1159.59473 NaN NaN NaN NaN NaN NaN NaN 64.062 1 67.52 67.02 68.02 3.4578 0 0 0 0.53105 1 14472 14472 4.3292 0 1 + 58804 19791 37172 37191 67667 67667 0.021318230568795116 YYCVCCELF 9 Unmodified _YYCVCCELF_ 0 0 0 BLACKJACK_dup163|chr2:26065438-26066434:-|3.0640989608840097|0.3369877746515419|3.18|151.0|34|3|sense BLACKJACK_dup163|chr2:26065438-26066434:-|3.0640989608840097|0.3369877746515419|3.18|151.0|34|3|sense BLACKJACK_dup163|chr2:26065438-26066434:-|3.0640989608840097|0.3369877746515419|3.18|151.0|34|3|sense MULTI-MSMS UPN48_class_I_Rep_2 6 571.7218017578125 2 571.721407 1141.42826 0.52077 0.00029774 0.98467 0.00056296 1.5054 0.0008607 571.7218963061475 64.196 0.59823 67.671 67.491 68.089 3.4743 71 46 2 0 0 0 0.45688 1 14522 14522 4.756 1.8668 1 209030 58805 415 37173 37192 67668 67668 -0.13679689434866305 YYCWFRESD 9 Unmodified _YYCWFRESD_ 0 0 0 REV__L1ME3B_dup1799|chr4:2720665-2720890:+|1.215475441706395|0.0479880699125098|4.66|151.0|10|1|anti-sense REV__L1ME3B_dup1799|chr4:2720665-2720890:+|1.215475441706395|0.0479880699125098|4.66|151.0|10|1|anti-sense MSMS UPN48_class_I_Rep_2 6 634.7557983398438 2 634.755681 1267.49681 NaN NaN NaN NaN NaN NaN NaN 49.92 1 53.614 53.114 54.114 3.6946 0 0 0 0.40038 1 10138 10138 0.6015 0 1 + 58806 28047 37174 37193 67669 67669 -0.12623985539107707 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS UPN48_class_I_Rep_1 5 625.78173828125 2 625.279846 1248.54514 0.4427 0.00027681 -0.068088 -4.2574E-05 0.37461 0.00023424 625.2797675107197 42.575 0.72272 46.083 45.751 46.473 3.5079 110 58 2 0 0 0 0.039218 5 7908 7826;7868;7871;7908;7946 57.722 19.748 1 192290 58807 2083 37175 37194 67670;67671;67672;67673;67674 67673 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS UPN48_class_I_Rep_1 5 417.18890380859375 3 417.188989 1248.54514 -0.11847 -4.9426E-05 0.049979 2.0851E-05 -0.068495 -2.8575E-05 417.18893290615364 42.503 1.2586 46.011 45.671 46.929 3.5079 304 103 4 0 0 0 0.079935 3 7889 7852;7889;7927 38.615 16.559 1 984570 58808 2083 37175 37194 67675;67676;67677 67676 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS UPN48_class_I_Rep_2 6 625.2796630859375 2 625.279846 1248.54514 0.42881 0.00026812 -0.060573 -3.7875E-05 0.36823 0.00023025 625.2797430883091 42.237 0.84109 45.995 45.633 46.474 3.7579 172 81 3 0 0 0 0.029966 7 7786 7713;7749;7786;7826;7863;7880;7905 53.404 30.668 1 340940 58809 2083 37175 37194 67678;67679;67680;67681;67682;67683;67684 67680 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS UPN48_class_I_Rep_2 6 417.1889343261719 3 417.188989 1248.54514 0.016635 6.9399E-06 -0.049713 -2.074E-05 -0.033078 -1.38E-05 417.1888991244307 42.221 1.4112 45.979 45.522 46.933 3.7579 368 129 4 0 0 0 0.066364 2 7803 7769;7803 41.956 18.166 1 887110 58810 2083 37175 37194 67685;67686 67686 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS UPN48_class_I_Rep_3 7 625.2796020507812 2 625.279846 1248.54514 0.51313 0.00032085 -0.015537 -9.7148E-06 0.49759 0.00031113 625.2796784470712 42.344 0.80598 45.985 45.675 46.481 3.6415 124 66 3 0 0 0 0.0067715 4 7730 7695;7730;7771;7807 79.596 37.757 1 217690 58811 2083 37175 37194 67687;67688;67689;67690 67688 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS UPN48_class_I_Rep_3 7 417.1888427734375 3 417.188989 1248.54514 0.015833 6.6052E-06 -0.077206 -3.221E-05 -0.061373 -2.5604E-05 417.1888863981007 42.346 1.1935 45.988 45.606 46.8 3.6415 300 102 4 0 0 0 0.095207 3 7736 7736;7777;7817 34.932 16.559 1 901260 58812 2083 37175 37194 67691;67692;67693 67691 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MSMS UPN48_class_I_Rep_3 7 625.2805786132812 2 625.279846 1248.54514 NaN NaN NaN NaN NaN NaN NaN 42.753 1 46.395 45.895 46.895 3.6415 0 0 0 0.37698 1 7872 7872 5.7319 0.50118 1 58813 2083 37175 37194 67694 67694 -0.06919168627587169 YYDMRRLY 8 Unmodified _YYDMRRLY_ 0 0 0 nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;ENST00000503952.5_1_4:128606686-128637588:+|nuORF nc|ENSG00000164066|Q9ULD6-4|INTU nc|ENSG00000164066|Q9ULD6-4|INTU MSMS UPN48_class_I_Rep_1 5 590.2819213867188 2 590.284408 1178.55426 NaN NaN NaN NaN NaN NaN NaN 74.688 1 78.177 77.677 78.677 3.49 0 0 0 0.40604 1 17659 17659 2.5775 1.7838 1 58814 4073 37176 37195 67695 67695 -0.02787098542876265 YYDMRTDRNKG 11 Unmodified _YYDMRTDRNKG_ 0 0 0 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 MULTI-MSMS UPN46_class_I_Rep_3 1 473.8882751464844 3 473.554226 1417.64085 0.075739 3.5866E-05 -0.37877 -0.00017937 -0.30303 -0.0001435 473.8884137128295 33.962 0.84878 33.962 33.595 34.443 0 133 61 3 0 0 0 0.67113 1 6082 6082 1.3296 0.55311 1 247060 58815 2021 37177 37196 67696 67696 -0.051267637790033405 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32 nc|ENSG00000008517|P24001-4|IL32 nc|ENSG00000008517|P24001-4|IL32 MSMS UPN48_class_I_Rep_2 6 604.2671508789062 2 604.266936 1206.51932 NaN NaN NaN NaN NaN NaN NaN 37.97 1 41.686 41.186 42.186 3.7164 0 0 0 0.058622 1 6558 6558 34.402 19.563 1 58816 741 37178 37197 67697 67697 -0.07568062869859205 YYEFRHTQ 8 Unmodified _YYEFRHTQ_ 0 0 0 nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3 nc|ENSG00000178149|Q5D0E6-4|DALRD3 nc|ENSG00000178149|Q5D0E6-4|DALRD3 MSMS UPN48_class_I_Rep_2 6 572.2766723632812 2 572.26453 1142.51451 NaN NaN NaN NaN NaN NaN NaN 64.647 1 68.126 67.626 68.626 3.4792 0 0 0 0.40581 1 14632 14632 2.8892 0 1 58817 4813 37179 37198 67698 67698 -0.051049022219331164 YYEMIFFV 8 Unmodified _YYEMIFFV_ 0 0 0 L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|54|2|anti-sense L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|54|2|anti-sense L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|54|2|anti-sense MSMS UPN47_class_I_Rep_1 2 556.2637329101562 2 556.262079 1110.50961 NaN NaN NaN NaN NaN NaN NaN 67.839 1 71.204 70.704 71.704 3.3646 0 0 0 0.40738 1 16339 16339 0.79363 0 1 58818 12197 37180 37199 67699 67699 -0.04122922408919294 YYEMIFFV 8 Unmodified _YYEMIFFV_ 0 0 0 L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|54|2|anti-sense L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|54|2|anti-sense L1ME1_dup12595|chr6:156084888-156086006:-|1.47610298572472|0.0039636181024297|8.54|143.0|54|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 556.2637329101562 2 556.262079 1110.50961 0.36256 0.00020168 1.6262 0.00090462 1.9888 0.0011063 556.2617542324408 67.825 0.080688 71.19 71.152 71.233 3.3646 6 4 2 0 0 0 0.72333 1 16339 16339 0.79363 0 1 35333 58819 12197 37180 37199 67700 67700 -0.04122922408919294 YYENYQNLT 9 Unmodified _YYENYQNLT_ 0 0 0 Tigger1_dup4707|chr6:20421888-20423036:-|3.500784377668927|0.0664612736976561|5.72|151.0|82|3|anti-sense Tigger1_dup4707|chr6:20421888-20423036:-|3.500784377668927|0.0664612736976561|5.72|151.0|82|3|anti-sense Tigger1_dup4707|chr6:20421888-20423036:-|3.500784377668927|0.0664612736976561|5.72|151.0|82|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 604.7698364257812 2 604.266936 1206.51932 0.45503 0.00027496 -0.16819 -0.00010163 0.28684 0.00017333 604.2669336817031 38.125 0.25059 41.784 41.586 41.836 3.6595 28 22 2 0 0 0 0.35081 1 6504 6504 10.824 0 1 86135 58820 33104 37181 37200 67701 67701 -0.07568062869859205 YYEPYYSR 8 Unmodified _YYEPYYSR_ 0 0 0 nc|ENSG00000211701|A0A0A0MS02|TRGV1 nc|ENSG00000211701|A0A0A0MS02|TRGV1 nc|ENSG00000211701|A0A0A0MS02|TRGV1 MSMS UPN47_class_I_Rep_1 2 571.2056274414062 2 570.753464 1139.49238 NaN NaN NaN NaN NaN NaN NaN 118.06 1 121.66 121.16 122.16 3.6036 0 0 0 0.40746 1 29285 29285 0.69038 0 1 58821 16813 37182 37201 67702 67702 -0.07179126690380144 YYERTYIYW 9 Unmodified _YYERTYIYW_ 0 0 0 REV__L1MB7_dup4098|chr3:45648223-45649177:-|1.1443594522598113|0.0095395249208745|6.91|150.0|10|1|sense REV__L1MB7_dup4098|chr3:45648223-45649177:-|1.1443594522598113|0.0095395249208745|6.91|150.0|10|1|sense MSMS UPN48_class_I_Rep_1 5 452.88031005859375 3 452.880156 1355.61864 NaN NaN NaN NaN NaN NaN NaN 95.414 1 99.031 98.531 99.531 3.6167 0 0 0 0.40177 1 22977 22977 0.26902 0 1 + 58822 26258 37183 37202 67703 67703 -0.0449462018509621 YYESIPHVF 9 Unmodified _YYESIPHVF_ 0 0 0 REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|168|1|anti-sense REV__MER52-int_dup343|chr11:108200262-108204146:+|1.5505688389364087|0.1282332695355345|3.6|151.0|168|1|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 577.77978515625 2 577.779482 1153.54441 0.47139 0.00027236 -0.071715 -4.1436E-05 0.39968 0.00023093 577.7794200904214 73.983 0.59452 77.561 77.192 77.787 3.5779 87 66 2 0 0 0 0.32219 1 17389 17389 12.532 0 1 189550 + 58823 31400 37184 37203 67704 67704 -0.026219632766242285 YYEWVLDF 8 Unmodified _YYEWVLDF_ 0 0 0 L1MEf_dup2310|chr3:136634498-136635961:+|1.119482072862859|0.014246605747842|6.3|151.0|57|1|anti-sense L1MEf_dup2310|chr3:136634498-136635961:+|1.119482072862859|0.014246605747842|6.3|151.0|57|1|anti-sense L1MEf_dup2310|chr3:136634498-136635961:+|1.119482072862859|0.014246605747842|6.3|151.0|57|1|anti-sense MSMS UPN47_class_I_Rep_3 4 568.2313232421875 2 567.760758 1133.50696 NaN NaN NaN NaN NaN NaN NaN 21.339 1 24.689 24.189 25.189 3.3496 0 0 0 0.40746 1 2369 2369 0.69038 0 1 58824 13260 37185 37204 67705 67705 -0.05445054542246908 YYEYERFDV 9 Unmodified _YYEYERFDV_ 0 0 0 REV__FLT3|Y599insY|na|na|ENSG00000122025|na|na|inframe_insertion REV__FLT3|Y599insY|na|na|ENSG00000122025|na|na|inframe_insertion MSMS UPN47_class_I_Rep_1 2 642.282958984375 2 642.282586 1282.55062 NaN NaN NaN NaN NaN NaN NaN 97.943 1 101.73 101.23 102.23 3.7861 0 0 0 0.4007 1 24255 24255 0.52476 0 1 + 58825 23323 37186 37205 67706 67706 -0.0793548983576784 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS UPN48_class_I_Rep_1 5 632.2695922851562 2 632.269478 1262.5244 0.48581 0.00030716 -0.077018 -4.8696E-05 0.4088 0.00025847 632.2693055192057 55.03 0.44315 58.538 58.365 58.808 3.5082 42 27 2 0 0 0 0.23293 3 11738 11697;11738;11745 18.146 1.3745 1 109860 58826 3603 37187 37206 67707;67708;67709 67708 -0.09635759007255729 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS UPN48_class_I_Rep_2 6 632.27001953125 2 632.269478 1262.5244 0.61395 0.00038818 0.26087 0.00016494 0.87482 0.00055312 632.2695732423597 54.967 0.43692 58.523 58.336 58.773 3.5559 36 24 2 0 0 0 0.31407 2 11675 11632;11675 13.042 2.2306 1 117790 58827 3603 37187 37206 67710;67711 67711 -0.09635759007255729 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MSMS UPN48_class_I_Rep_3 7 632.2691040039062 2 632.269478 1262.5244 NaN NaN NaN NaN NaN NaN NaN 54.968 1 58.538 58.038 59.038 3.5694 0 0 0 0.32573 1 11608 11608 9.3831 1.473 1 58828 3603 37187 37206 67712 67712 -0.09635759007255729 YYEYSWYK 8 Unmodified _YYEYSWYK_ 0 0 0 L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|82|2|anti-sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|82|2|anti-sense L1MD1_dup5781|chr16:47209471-47210927:-|1.9156828750610009|0.0597549954974378|5.0|151.0|82|2|anti-sense MSMS UPN47_class_I_Rep_3 4 601.263671875 2 601.263665 1200.51278 NaN NaN NaN NaN NaN NaN NaN 68.967 1 72.165 71.665 72.665 3.1977 0 0 0 0.40625 1 16790 16790 2.3027 0.24298 1 58829 11964 37188 37207 67713 67713 -0.07945956030562229 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENST00000556369.1_3_14:77935388-77935589:+|nuORF;ENSG00000100591|ENST00000216479|AHSA1 ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENST00000556369.1_3_14:77935388-77935589:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 648.3192749023438 2 648.318971 1294.62339 0.59416 0.0003852 -0.13857 -8.9838E-05 0.45559 0.00029537 648.3188498981835 61.902 0.77487 65.369 65.049 65.824 3.4678 160 68 3 0 0 0 2.0044E-06 7 13803 13724;13764;13803;13844;13882;13922;13944 121.35 73.751 1 406990 58830 1517 37189 37208 67714;67715;67716;67717;67718;67719;67720 67716 -0.012137360423594146 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENST00000556369.1_3_14:77935388-77935589:+|nuORF;ENSG00000100591|ENST00000216479|AHSA1 ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENST00000556369.1_3_14:77935388-77935589:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 648.3191528320312 2 648.318971 1294.62339 0.55666 0.00036089 -0.1625 -0.00010535 0.39416 0.00025554 648.3188197507071 61.789 0.76366 65.262 64.954 65.718 3.4738 152 62 3 0 0 0 0.13711 5 13738 13700;13738;13779;13816;13857 87.258 57.418 1 355820 58831 1517 37189 37208 67721;67722;67723;67724;67725 67722 -0.012137360423594146 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENST00000556369.1_3_14:77935388-77935589:+|nuORF;ENSG00000100591|ENST00000216479|AHSA1 ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENST00000556369.1_3_14:77935388-77935589:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 648.3193969726562 2 648.318971 1294.62339 0.65822 0.00042673 -0.25359 -0.00016441 0.40463 0.00026233 648.3187258388623 61.584 0.68945 65.097 64.851 65.54 3.5128 156 59 3 0 0 0 7.6176E-07 7 13640 13560;13564;13570;13602;13640;13677;13716 132.38 68.419 1 508860 58832 1517 37189 37208 67726;67727;67728;67729;67730;67731;67732 67730 -0.012137360423594146 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENST00000556369.1_3_14:77935388-77935589:+|nuORF;ENSG00000100591|ENST00000216479|AHSA1 ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENST00000556369.1_3_14:77935388-77935589:+|nuORF MSMS UPN48_class_I_Rep_3 7 648.3193359375 2 648.318971 1294.62339 NaN NaN NaN NaN NaN NaN NaN 62.031 1 65.541 65.041 66.041 3.5104 0 0 0 0.53105 1 13757 13757 7.609 4.3276 1 58833 1517 37189 37208 67733 67733 -0.012137360423594146 YYFEVWYV 8 Unmodified _YYFEVWYV_ 0 0 0 L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|152|1|anti-sense L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|152|1|anti-sense L1PA15_dup936|chr2:148412304-148416541:-|1.3718817470859177|0.0265246599103778|5.69|151.0|152|1|anti-sense MSMS UPN47_class_I_Rep_2 3 584.7709350585938 2 584.771126 1167.5277 NaN NaN NaN NaN NaN NaN NaN 29.704 1 33.196 32.696 33.696 3.4923 0 0 0 0.40604 1 4794 4794 2.5775 0 1 58834 13995 37190 37209 67734 67734 -0.04936464162574339 YYFEVYFF 8 Unmodified _YYFEVYFF_ 0 0 0 L1PA13_dup7148|chr13:20038263-20039473:-|3.1236692087494733|0.207681151184394|3.91|150.0|48|1|anti-sense L1PA13_dup7148|chr13:20038263-20039473:-|3.1236692087494733|0.207681151184394|3.91|150.0|48|1|anti-sense L1PA13_dup7148|chr13:20038263-20039473:-|3.1236692087494733|0.207681151184394|3.91|150.0|48|1|anti-sense MSMS UPN47_class_I_Rep_3 4 589.263671875 2 589.265676 1176.5168 NaN NaN NaN NaN NaN NaN NaN 73.732 1 76.968 76.468 77.468 3.2363 0 0 0 0.40404 1 18225 18225 5.2307 0 1 58835 13793 37191 37210 67735 67735 -0.0643986653687989 YYFFVRNLQ 9 Unmodified _YYFFVRNLQ_ 0 0 0 L1MA5_dup114|chr1:119186305-119187583:-|1.125512539975586|0.2053536603944946|2.45|151.0|73|2|anti-sense L1MA5_dup114|chr1:119186305-119187583:-|1.125512539975586|0.2053536603944946|2.45|151.0|73|2|anti-sense L1MA5_dup114|chr1:119186305-119187583:-|1.125512539975586|0.2053536603944946|2.45|151.0|73|2|anti-sense MSMS UPN48_class_I_Rep_1 5 625.3201904296875 2 625.321848 1248.62914 NaN NaN NaN NaN NaN NaN NaN 57.609 1 61.103 60.603 61.603 3.4942 0 0 0 0.19137 1 12497 12497 16.942 2.104 1 58836 9868 37192 37211 67736 67736 0.01477407259994834 YYFGTWRM 8 Unmodified _YYFGTWRM_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 562.0230102539062 2 562.25512 1122.49569 NaN NaN NaN NaN NaN NaN NaN 85.823 1 89.593 89.093 90.093 3.7701 0 0 0 0.40738 1 20365 20365 0.79363 0 1 58837 16558 37193 37212 67737 67737 -0.06066155117355265 YYFGTWRM 8 Unmodified _YYFGTWRM_ 0 0 0 MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSTA-int_dup437|chr3:37374541-37376185:-|1.5186808540490246|0.2534054763373327|2.58|151.0|50|1|anti-sense MSMS UPN48_class_I_Rep_3 7 562.02294921875 2 562.25512 1122.49569 NaN NaN NaN NaN NaN NaN NaN 86.077 1 89.847 89.347 90.347 3.7701 0 0 0 0.40738 1 20435 20435 0.79363 0 1 58838 16558 37193 37212 67738 67738 -0.06066155117355265 YYFHYHHVT 9 Unmodified _YYFHYHHVT_ 0 0 0 ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 ENSG00000110881|ENST00000447966|ASIC1 MSMS UPN47_class_I_Rep_1 2 633.7886962890625 2 633.788173 1265.56179 NaN NaN NaN NaN NaN NaN NaN 55.014 1 58.515 58.015 59.015 3.5014 0 0 0 0.39326 1 12454 12454 2.3027 0.4585 1 58839 1956 37194 37213 67739 67739 -0.06036622950978199 YYFILIRIT 9 Unmodified _YYFILIRIT_ 0 0 0 L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|20|1|sense L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|20|1|sense L1MB2_dup7697|chr18:13020110-13022367:-|1.840017333906884|0.0591454789185745|4.96|151.0|20|1|sense MSMS UPN46_class_I_Rep_3 1 601.3500366210938 2 601.352617 1200.69068 NaN NaN NaN NaN NaN NaN NaN 75.307 1 75.307 74.807 75.807 0 0 0 0 0.40038 1 17502 17502 0.6015 0 1 58840 10285 37195 37214 67740 67740 0.0983633895928051 YYFKLCSYF 9 Unmodified _YYFKLCSYF_ 0 0 0 L1PB4_dup2264|chr5:80163155-80164375:-|5.201220289675051|0.2152176434139558|4.59|151.0|45|1|anti-sense L1PB4_dup2264|chr5:80163155-80164375:-|5.201220289675051|0.2152176434139558|4.59|151.0|45|1|anti-sense L1PB4_dup2264|chr5:80163155-80164375:-|5.201220289675051|0.2152176434139558|4.59|151.0|45|1|anti-sense MSMS UPN47_class_I_Rep_3 4 617.2864990234375 2 617.286085 1232.55762 NaN NaN NaN NaN NaN NaN NaN 46.104 1 49.348 48.848 49.848 3.2441 0 0 0 0.39428 1 9832 9832 2.0598 0 1 58841 15300 37196 37215 67741 67741 -0.0493584848888986 YYFLFLMI 8 Unmodified _YYFLFLMI_ 0 0 0 Tigger2_dup265|chr1:243302271-243303790:+|5.750047371149191|0.2223467109161971|4.69|151.0|17|1|sense Tigger2_dup265|chr1:243302271-243303790:+|5.750047371149191|0.2223467109161971|4.69|151.0|17|1|sense Tigger2_dup265|chr1:243302271-243303790:+|5.750047371149191|0.2223467109161971|4.69|151.0|17|1|sense MULTI-MSMS UPN46_class_I_Rep_3 1 555.2904052734375 2 555.29064 1108.56673 -0.18668 -0.00010366 -0.75408 -0.00041873 -0.94076 -0.00052239 555.2902046981749 12.644 0.27439 12.644 12.553 12.828 0 34 22 2 0 0 0 0.82752 1 194 194 0.79363 0 1 64430 58842 33312 37197 37216 67742 67742 0.016785448674227155 YYFPVKNVI 9 Unmodified _YYFPVKNVI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN48_class_I_Rep_1 5 571.81591796875 2 571.815867 1141.61718 0.51345 0.0002936 -0.26415 -0.00015105 0.2493 0.00014255 571.8157259168157 64.579 0.52171 68.033 67.724 68.245 3.4541 51 41 2 0 0 0 0.18929 3 14693 14624;14669;14693 21.747 15.541 1 128170 58843 5270 37198 37217 67743;67744;67745 67745 0.052037905167935605 YYFPVKNVI 9 Unmodified _YYFPVKNVI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS UPN48_class_I_Rep_2 6 571.8160400390625 2 571.815867 1141.61718 0.51978 0.00029722 -0.14674 -8.391E-05 0.37304 0.00021331 571.8157253201856 64.418 0.27271 67.892 67.706 67.979 3.4743 34 21 2 0 0 0 0.09884 2 14588 14547;14588 34.102 27.379 1 174290 58844 5270 37198 37217 67746;67747 67747 0.052037905167935605 YYFPVKNVI 9 Unmodified _YYFPVKNVI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS UPN48_class_I_Rep_3 7 571.8154296875 2 571.815867 1141.61718 NaN NaN NaN NaN NaN NaN NaN 64.389 1 67.897 67.397 68.397 3.5083 0 0 0 0.19137 1 14472 14472 16.942 9.0321 1 58845 5270 37198 37217 67748 67748 0.052037905167935605 YYFPVKNVI 9 Unmodified _YYFPVKNVI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS UPN48_class_I_Rep_3 7 571.817138671875 2 571.815867 1141.61718 NaN NaN NaN NaN NaN NaN NaN 64.432 1 67.94 67.44 68.44 3.5083 0 0 0 0.19137 1 14485 14485 16.942 7.5592 1 58846 5270 37198 37217 67749 67749 0.052037905167935605 YYFRGLFY 8 Unmodified _YYFRGLFY_ 0 0 0 L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|270|3|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|270|3|anti-sense L1PA5_dup3997|chr5:131344052-131349149:+|4.001512783552435|0.0751162844123316|5.74|151.0|270|3|anti-sense MSMS UPN47_class_I_Rep_2 3 564.7775268554688 2 564.779285 1127.54402 NaN NaN NaN NaN NaN NaN NaN 81.225 1 84.609 84.109 85.109 3.3839 0 0 0 0.36148 1 20227 20227 19.439 0 1 58847 14470 37199 37218 67750 67750 -0.014653382058213538 YYFRLLRVI 9 Unmodified _YYFRLLRVI_ 0 0 0 L1MD_dup6477|chr12:49606537-49607687:+|1.188142988826442|0.1232944371303225|3.27|151.0|64|2|anti-sense L1MD_dup6477|chr12:49606537-49607687:+|1.188142988826442|0.1232944371303225|3.27|151.0|64|2|anti-sense L1MD_dup6477|chr12:49606537-49607687:+|1.188142988826442|0.1232944371303225|3.27|151.0|64|2|anti-sense MSMS UPN46_class_I_Rep_3 1 621.8726806640625 2 621.871508 1241.72846 NaN NaN NaN NaN NaN NaN NaN 23.629 1 23.629 23.129 24.129 0 0 0 0 0.4007 1 2994 2994 0.52476 0.066424 1 58848 11889 37200 37219 67751 67751 0.11726849944739115 YYFSKCFQ 8 Unmodified _YYFSKCFQ_ 0 0 0 REV__L1PA7_dup2615|chr3:152425631-152426364:+|5.440641867943213|0.2034176832195628|4.74|151.0|21|3|sense REV__L1PA7_dup2615|chr3:152425631-152426364:+|5.440641867943213|0.2034176832195628|4.74|151.0|21|3|sense MSMS UPN47_class_I_Rep_2 3 543.2799072265625 2 543.241678 1084.4688 NaN NaN NaN NaN NaN NaN NaN 25.783 1 29.278 28.778 29.778 3.4945 0 0 0 0.40604 1 3633 3633 2.5775 1.0956 1 + 58849 30055 37201 37220 67752 67752 -0.07005263728547106 YYFSTYDK 8 Unmodified _YYFSTYDK_ 0 0 0 REV__L1P3_dup1482|chr7:32500001-32500970:-|1.8928388635954712|0.0454977852751341|5.38|151.0|25|2|sense REV__L1P3_dup1482|chr7:32500001-32500970:-|1.8928388635954712|0.0454977852751341|5.38|151.0|25|2|sense MSMS UPN47_class_I_Rep_2 3 543.7438354492188 2 543.742565 1085.47058 NaN NaN NaN NaN NaN NaN NaN 22.046 1 25.471 24.971 25.971 3.4241 0 0 0 0.40604 1 2556 2556 2.5775 0 1 + 58850 28872 37202 37221 67753 67753 -0.06873931438940417 YYFVFLLF 8 Unmodified _YYFVFLLF_ 0 0 0 HAL1_dup11591|chr8:61532942-61533675:-|1.3880732232243214|0.024514944586484|5.82|150.0|30|1|anti-sense HAL1_dup11591|chr8:61532942-61533675:-|1.3880732232243214|0.024514944586484|5.82|150.0|30|1|anti-sense HAL1_dup11591|chr8:61532942-61533675:-|1.3880732232243214|0.024514944586484|5.82|150.0|30|1|anti-sense MSMS UPN47_class_I_Rep_2 3 556.2970581054688 2 556.296779 1110.57901 NaN NaN NaN NaN NaN NaN NaN 58.256 1 61.537 61.037 62.037 3.2818 0 0 0 0.40738 1 13472 13472 0.79363 0 1 58851 7788 37203 37222 67754 67754 0.028139046021351533 YYFVIVLY 8 Unmodified _YYFVIVLY_ 0 0 0 REV__L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|118|2|anti-sense REV__L1PA8A_dup667|chr4:106082662-106085271:+|1.8196180646271785|0.3071184854690645|2.57|151.0|118|2|anti-sense MSMS UPN47_class_I_Rep_2 3 540.2919921875 2 540.294236 1078.57392 NaN NaN NaN NaN NaN NaN NaN 61.071 1 64.336 63.836 64.836 3.2654 0 0 0 0.39167 1 14329 14329 11.114 3.2043 1 + 58852 30279 37204 37223 67755 67755 0.037776007395450506 YYFVKWTCS 9 Unmodified _YYFVKWTCS_ 0 0 0 REV__L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|48|3|anti-sense REV__L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|48|3|anti-sense MSMS UPN47_class_I_Rep_1 2 598.7891235351562 2 598.775885 1195.53722 NaN NaN NaN NaN NaN NaN NaN 41.939 1 45.618 45.118 46.118 3.6792 0 0 0 0.39518 1 8474 8474 1.8442 0.19162 1 + 58853 24336 37205 37224 67756 67756 -0.05273019148671665 YYFVQWGF 8 Unmodified _YYFVQWGF_ 0 0 0 REV__L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|79|2|anti-sense REV__L1PA16_dup94|chr1:50616979-50618422:-|5.800179905267655|0.0791904988431371|6.19|151.0|79|2|anti-sense MULTI-SECPEP UPN47_class_I_Rep_1 2 554.8074951171875 2 555.258185 1108.50182 0.32751 0.00018186 -3.7853 -0.0021018 -3.4577 -0.0019199 555.7595483174505 52.966 0.11176 56.525 56.428 56.539 3.5585 8 5 2 0 0 0 0.72333 1 11807 11807 2.5775 0 1 35990 + 58854 29429 37206 37225 67757 67757 -0.04809313614191524 YYFWLSYR 8 Unmodified _YYFWLSYR_ 0 0 0 REV__L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|44|1|anti-sense REV__L1MB7_dup10024|chr8:73850052-73850844:+|1.0497610298242854|0.0092274476143043|6.83|150.0|44|1|anti-sense MSMS UPN48_class_I_Rep_2 6 599.2916870117188 2 599.290017 1196.56548 NaN NaN NaN NaN NaN NaN NaN 63.418 1 66.892 66.392 67.392 3.4738 0 0 0 0.40738 1 14256 14256 0.79363 0 1 + 58855 26107 37207 37226 67758 67758 -0.024939531770996837 YYFYFLAHI 9 Unmodified _YYFYFLAHI_ 0 0 0 L1MC3_dup2466|chr3:142072472-142073105:+|1.3591107992427236|0.0049115947782622|8.11|151.0|29|1|anti-sense L1MC3_dup2466|chr3:142072472-142073105:+|1.3591107992427236|0.0049115947782622|8.11|151.0|29|1|anti-sense L1MC3_dup2466|chr3:142072472-142073105:+|1.3591107992427236|0.0049115947782622|8.11|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_1 5 618.8062744140625 2 618.808042 1235.60153 NaN NaN NaN NaN NaN NaN NaN 57.843 1 61.337 60.837 61.837 3.4942 0 0 0 0.381 1 12567 12567 5.2307 0 1 58856 11322 37208 37227 67759 67759 -0.006844960002581502 YYFYFLAHI 9 Unmodified _YYFYFLAHI_ 0 0 0 L1MC3_dup2466|chr3:142072472-142073105:+|1.3591107992427236|0.0049115947782622|8.11|151.0|29|1|anti-sense L1MC3_dup2466|chr3:142072472-142073105:+|1.3591107992427236|0.0049115947782622|8.11|151.0|29|1|anti-sense L1MC3_dup2466|chr3:142072472-142073105:+|1.3591107992427236|0.0049115947782622|8.11|151.0|29|1|anti-sense MSMS UPN48_class_I_Rep_3 7 618.8062744140625 2 618.808042 1235.60153 NaN NaN NaN NaN NaN NaN NaN 57.435 1 60.966 60.466 61.466 3.5317 0 0 0 0.3264 1 12354 12354 9.3474 0.75416 1 58857 11322 37208 37227 67760 67760 -0.006844960002581502 YYFYKAQKK 9 Unmodified _YYFYKAQKK_ 0 0 0 L1ME3F_dup3915|chr15:80061514-80061822:-|1.3107577968021074|0.0546114047386087|4.59|151.0|13|3|sense L1ME3F_dup3915|chr15:80061514-80061822:-|1.3107577968021074|0.0546114047386087|4.59|151.0|13|3|sense L1ME3F_dup3915|chr15:80061514-80061822:-|1.3107577968021074|0.0546114047386087|4.59|151.0|13|3|sense MSMS UPN47_class_I_Rep_1 2 619.8309936523438 2 619.832049 1237.64954 NaN NaN NaN NaN NaN NaN NaN 48.452 1 52.134 51.634 52.634 3.6819 0 0 0 0.4007 1 10453 10453 0.52476 0.066424 1 58858 12820 37209 37228 67761 67761 0.0402257791977263 YYGAPFEH 8 Unmodified _YYGAPFEH_ 0 0 0 ENSG00000198382|ENST00000356136|UVRAG ENSG00000198382|ENST00000356136|UVRAG ENSG00000198382|ENST00000356136|UVRAG MULTI-MSMS UPN47_class_I_Rep_3 4 492.216064453125 2 492.216517 982.418482 0.23239 0.00011439 -0.60437 -0.00029748 -0.37197 -0.00018309 492.2161795931854 78.913 0.076645 82.208 82.167 82.243 3.295 10 7 2 0 0 0 0.82752 1 19699 19699 2.8892 2.8892 1 34756 58859 5429 37210 37229 67762 67762 -0.07343050062036127 YYGQGFPSF 9 Unmodified _YYGQGFPSF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS UPN48_class_I_Rep_1 5 533.2374267578125 2 533.23745 1064.46035 0.37977 0.00020251 0.30485 0.00016256 0.68463 0.00036507 533.2374940520705 69.868 0.55055 73.328 73.109 73.66 3.4598 88 42 3 0 0 0 0.061943 2 16251 16212;16251 43.858 43.858 1 163270 58860 3476;2853 37211 37230 67763;67764 67764 -0.06930494373523288 YYGQGFPSF 9 Unmodified _YYGQGFPSF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS UPN48_class_I_Rep_2 6 533.73876953125 2 533.23745 1064.46035 0.4335 0.00023116 0.20725 0.00011051 0.64074 0.00034167 533.2375364578567 69.719 0.53748 73.241 73.001 73.539 3.5216 71 40 2 0 0 0 0.28552 1 16165 16165 14.838 8.1151 1 129730 58861 3476;2853 37211 37230 67765 67765 -0.06930494373523288 YYGQGFPSF 9 Unmodified _YYGQGFPSF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS UPN48_class_I_Rep_3 7 533.2380981445312 2 533.23745 1064.46035 0.58384 0.00031133 -0.14085 -7.5107E-05 0.44299 0.00023622 533.2373405645833 69.631 0.61137 73.144 72.946 73.558 3.5129 85 49 2 0 0 0 0.17897 1 16044 16044 22.736 14.143 1 164030 58862 3476;2853 37211 37230 67766 67766 -0.06930494373523288 YYHCIIVW 8 Unmodified _YYHCIIVW_ 0 0 0 REV__L1MC4_dup5752|chr3:197095746-197096339:-|1.0482193151358743|0.0380999393901141|4.78|151.0|34|3|anti-sense REV__L1MC4_dup5752|chr3:197095746-197096339:-|1.0482193151358743|0.0380999393901141|4.78|151.0|34|3|anti-sense MSMS UPN47_class_I_Rep_3 4 548.8349609375 2 548.767863 1095.52117 NaN NaN NaN NaN NaN NaN NaN 114.04 1 117.54 117.04 118.04 3.4963 0 0 0 0.40738 1 27991 27991 0.79363 0 1 + 58863 26932 37212 37231 67767 67767 -0.02276680594923164 YYHCLRNF 8 Unmodified _YYHCLRNF_ 0 0 0 REV__L1PBa_dup1185|chr9:27025473-27027398:+|2.2810769106662563|0.3863894064642971|2.56|151.0|73|1|anti-sense REV__L1PBa_dup1185|chr9:27025473-27027398:+|2.2810769106662563|0.3863894064642971|2.56|151.0|73|1|anti-sense MSMS UPN47_class_I_Rep_1 2 558.2569580078125 2 558.258194 1114.50183 NaN NaN NaN NaN NaN NaN NaN 33.336 1 37.034 36.534 37.534 3.6983 0 0 0 0.40738 1 5857 5857 0.79363 0 1 + 58864 30630 37213 37232 67768 67768 -0.05083636885865417 YYHKRKRKCR 10 Unmodified _YYHKRKRKCR_ 0 0 0 REV__L1MB8_dup2653|chr3:32445816-32446572:-|1.1186909011275556|0.1312278467933527|3.09|151.0|20|3|sense REV__L1MB8_dup2653|chr3:32445816-32446572:-|1.1186909011275556|0.1312278467933527|3.09|151.0|20|3|sense MULTI-MSMS UPN48_class_I_Rep_1 5 479.9385986328125 3 479.938457 1436.79354 0.25356 0.00012169 0.61121 0.00029334 0.86477 0.00041504 479.9387881681426 12.867 0.56326 16.38 16.212 16.775 3.5133 144 78 3 0 0 0 0.56444 3 127 127;147;169 0.69767 0.69767 1 78913 + 58865 26400 37214 37233 67769;67770;67771 67769 0.09261521198936862 YYHKRKRKCR 10 Unmodified _YYHKRKRKCR_ 0 0 0 REV__L1MB8_dup2653|chr3:32445816-32446572:-|1.1186909011275556|0.1312278467933527|3.09|151.0|20|3|sense REV__L1MB8_dup2653|chr3:32445816-32446572:-|1.1186909011275556|0.1312278467933527|3.09|151.0|20|3|sense MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 3 479.938457 1436.79354 0.34334 0.00016478 0.83719 0.0004018 1.1805 0.00056659 479.9389144080194 12.808 0.33392 16.462 16.271 16.605 3.6549 0.041206 0.00020581 NaN 0.69767 67 45 2 NaN NaN NaN NaN 0 NaN NaN 0 63453 + 58866 26400 37214 37233 0.09261521198936862 YYHPLLPE 8 Unmodified _YYHPLLPE_ 0 0 0 REV__L1MC2_dup3983|chr10:69144103-69144706:-|1.302850032778236|0.0213189230328574|5.93|151.0|27|1|anti-sense REV__L1MC2_dup3983|chr10:69144103-69144706:-|1.302850032778236|0.0213189230328574|5.93|151.0|27|1|anti-sense MULTI-MSMS UPN47_class_I_Rep_2 3 516.2646484375 2 516.263468 1030.51238 -0.20326 -0.00010493 -0.16964 -8.7581E-05 -0.3729 -0.00019251 516.2633856966833 43.926 0.65893 47.283 46.953 47.611 3.358 43 33 2 0 0 0 0.82752 2 9054 9054;9203 2.5775 0 1 68886 + 58867 26663 37215 37234 67772;67773 67772 -0.0016533095977138146 YYHSVKVSWQ 10 Unmodified _YYHSVKVSWQ_ 0 0 0 REV__L1PA7_dup4132|chr5:38986641-38988608:-|4.324996898329519|0.3258685723464583|3.73|151.0|126|3|anti-sense REV__L1PA7_dup4132|chr5:38986641-38988608:-|4.324996898329519|0.3258685723464583|3.73|151.0|126|3|anti-sense MSMS UPN47_class_I_Rep_2 3 432.8851318359375 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 103.42 1 106.95 106.45 107.45 3.5231 0 0 0 0.53105 1 25141 25141 0.69767 0 1 + 58868 28820 37216 37235 67774 67774 -0.006117980909266407 YYHVIYLTV 9 Unmodified _YYHVIYLTV_ 0 0 0 L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|109|2|anti-sense L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|109|2|anti-sense L1MA4_dup586|chr1:212372313-212374684:+|2.800376670954828|0.0466076063296667|5.91|151.0|109|2|anti-sense MSMS UPN47_class_I_Rep_3 4 585.8124389648438 2 585.813325 1169.6121 NaN NaN NaN NaN NaN NaN NaN 56.465 1 59.637 59.137 60.137 3.1721 0 0 0 0.39428 1 12981 12981 2.0598 0 1 58869 9706 37217 37236 67775 67775 0.03407486654168679 YYIAIRLF 8 Unmodified _YYIAIRLF_ 0 0 0 REV__ENST00000417450.5_1_2:145077298-145077364:-|nuORF REV__ENST00000417450.5_1_2:145077298-145077364:-|nuORF MSMS UPN48_class_I_Rep_3 7 529.8053588867188 2 529.805303 1057.59605 NaN NaN NaN NaN NaN NaN NaN 21.844 1 25.558 25.058 26.058 3.7144 0 0 0 0.40738 1 2128 2128 0.79363 0 1 + 58870 22224 37218 37237 67776 67776 0.0695582520793323 YYICFFCK 8 Unmodified _YYICFFCK_ 0 0 0 REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7435913085938 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 24.77 1 28.52 28.02 29.02 3.7495 0 0 0 0.40738 1 3294 3294 0.79363 0 1 + 58871 30460 37219 37238 67777 67777 -0.06787131595251594 YYICFFCK 8 Unmodified _YYICFFCK_ 0 0 0 REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_1 2 543.7432250976562 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 117.17 1 120.78 120.28 121.28 3.6036 0 0 0 0.40738 1 29041 29041 0.79363 0 1 + 58872 30460 37219 37238 67778 67778 -0.06787131595251594 YYICFFCK 8 Unmodified _YYICFFCK_ 0 0 0 REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7427978515625 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 32.996 1 36.45 35.95 36.95 3.4547 0 0 0 0.40738 1 5788 5788 0.79363 0 1 + 58873 30460 37219 37238 67779 67779 -0.06787131595251594 YYICFFCK 8 Unmodified _YYICFFCK_ 0 0 0 REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN47_class_I_Rep_2 3 543.7547607421875 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 116.25 1 119.75 119.25 120.25 3.4965 0 0 0 0.40738 1 28375 28375 0.79363 0 1 + 58874 30460 37219 37238 67780 67780 -0.06787131595251594 YYICFFCK 8 Unmodified _YYICFFCK_ 0 0 0 REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN48_class_I_Rep_3 7 543.742919921875 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 24.524 1 28.293 27.793 28.793 3.769 0 0 0 0.40738 1 2852 2852 0.79363 0 1 + 58875 30460 37219 37238 67781 67781 -0.06787131595251594 YYICFFCK 8 Unmodified _YYICFFCK_ 0 0 0 REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense REV__L1PB1_dup6111|chr7:139835368-139836035:+|3.5791242866606456|0.0092289209230987|8.6|151.0|49|3|anti-sense MSMS UPN48_class_I_Rep_3 7 543.7423706054688 2 543.742999 1085.47145 NaN NaN NaN NaN NaN NaN NaN 114.99 1 118.63 118.13 119.13 3.6433 0 0 0 0.40738 1 27354 27354 0.79363 0 1 + 58876 30460 37219 37238 67782 67782 -0.06787131595251594 YYICMYHF 8 Unmodified _YYICMYHF_ 0 0 0 REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|54|1|anti-sense REV__L1MB2_dup813|chr2:63936699-63938036:+|1.6196430001732076|0.2880268273706838|2.49|151.0|54|1|anti-sense MSMS UPN47_class_I_Rep_3 4 570.2389526367188 2 570.238081 1138.46161 NaN NaN NaN NaN NaN NaN NaN 44.964 1 48.208 47.708 48.708 3.2441 0 0 0 0.40738 1 9480 9480 0.79363 0 1 + 58877 25782 37220 37239 67783 67783 -0.10208319600610594 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 589.318359375 2 589.318243 1176.62193 0.44885 0.00026451 0.19537 0.00011513 0.64422 0.00037965 589.3182327059613 73.842 0.28638 77.323 77.1 77.386 3.4812 82 29 4 0 0 0 0.066364 2 17411 17374;17411 41.956 25.013 1 968520 58878 5603 37221 37240 67784;67785 67785 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 589.3184814453125 2 589.318243 1176.62193 0.44842 0.00026426 0.19584 0.00011541 0.64426 0.00037967 589.3182334782665 74.015 0.30616 77.496 77.386 77.693 3.4812 64 28 4 0 0 0 0.019142 3 17487 17451;17487;17520 63.961 40.812 1 1608900 58879 5603 37221 37240 67786;67787;67788 67787 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 589.318359375 2 589.318243 1176.62193 0.44773 0.00026385 0.16059 9.464E-05 0.60832 0.00035849 589.3183164709203 74.303 0.27904 77.793 77.701 77.98 3.49 80 34 3 0 0 0 0.17897 3 17554 17554;17586;17596 22.736 10.205 1 320090 58880 5603 37221 37240 67789;67790;67791 67789 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 589.3197021484375 2 589.318243 1176.62193 0.44719 0.00026354 2.0991 0.001237 2.5463 0.0015006 589.821001825223 74.551 0.056099 78.041 77.992 78.048 3.49 8 5 2 0 0 0 0.17897 1 17622 17622 22.736 5.794 1 74910 58881 5603 37221 37240 67792 67792 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS UPN48_class_I_Rep_2 6 589.8199462890625 2 589.318243 1176.62193 0.47584 0.00028042 2.8353 0.0016709 3.3111 0.0019513 589.3198936140257 74.458 0.13817 78.048 77.937 78.075 3.59 23 14 3 0 0 0 0.17897 3 17500 17500;17513;17516 22.736 10.205 1 160750 58882 5603 37221 37240 67793;67794;67795 67793 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS UPN48_class_I_Rep_3 7 589.3184204101562 2 589.318243 1176.62193 0.5601 0.00033007 0.0081816 4.8216E-06 0.56828 0.0003349 589.3181529303018 73.725 0.67172 77.276 77.037 77.709 3.5505 174 81 3 0 0 0 0.073198 4 17297 17264;17297;17328;17359 40.239 23.297 1 767290 58883 5603 37221 37240 67796;67797;67798;67799 67797 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MSMS UPN48_class_I_Rep_3 7 589.319091796875 2 589.318243 1176.62193 NaN NaN NaN NaN NaN NaN NaN 74.894 1 78.46 77.96 78.96 3.5659 0 0 0 0.38784 1 17564 17564 3.5965 1.019 1 58884 5603 37221 37240 67800 67800 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_2 6 2 589.318243 1176.62193 0.47567 0.00028032 0.24104 0.00014205 0.71671 0.00042237 589.3182694841938 73.875 1.0286 77.453 76.951 77.98 3.5779 -0.021294 1.1868E-05 NaN 63.961 315 114 4 NaN NaN NaN NaN 0 NaN NaN 0 1894900 58885 5603 37221 37240 0.04068674659561111 YYIIFYNVV 9 Unmodified _YYIIFYNVV_ 0 0 0 REV__MER1A_dup1521|chr8:30068131-30068649:+|1.4526532699004613|0.2475695936251215|2.55|151.0|10|2|sense REV__MER1A_dup1521|chr8:30068131-30068649:+|1.4526532699004613|0.2475695936251215|2.55|151.0|10|2|sense MSMS UPN48_class_I_Rep_2 6 597.3160400390625 2 597.3157 1192.61685 NaN NaN NaN NaN NaN NaN NaN 73.768 1 77.346 76.846 77.846 3.5779 0 0 0 0.1074 1 17333 17333 23.148 0 1 + 58886 31118 37222 37241 67801 67801 0.02824370796929543 YYIKIMVY 8 Unmodified _YYIKIMVY_ 0 0 0 L1MC5a_dup280|chr1:43750894-43751552:+|1.4671936472707026|0.0047438441265801|8.27|151.0|31|2|anti-sense L1MC5a_dup280|chr1:43750894-43751552:+|1.4671936472707026|0.0047438441265801|8.27|151.0|31|2|anti-sense L1MC5a_dup280|chr1:43750894-43751552:+|1.4671936472707026|0.0047438441265801|8.27|151.0|31|2|anti-sense MSMS UPN47_class_I_Rep_2 3 546.7935791015625 2 546.793546 1091.57254 NaN NaN NaN NaN NaN NaN NaN 32.324 1 35.779 35.279 36.279 3.4547 0 0 0 0.40746 1 5585 5585 0.69038 0 1 58887 11737 37223 37242 67802 67802 0.030416433791288 YYIKLKDLR 9 Unmodified _YYIKLKDLR_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MSMS UPN46_class_I_Rep_3 1 606.3607177734375 2 606.360973 1210.70739 NaN NaN NaN NaN NaN NaN NaN 44.788 1 44.788 44.288 45.288 0 0 0 0 0.40038 1 9052 9052 0.6015 0 1 58888 3139 37224 37243 67803 67803 0.11046839845221257 YYIKSRKPL 9 Unmodified _YYIKSRKPL_ 0 0 0 ERV3-16A3_I-int_dup3791|chr9:131994787-131996590:+|1.2489421627150843|0.0328321941424702|5.25|150.0|45|3|sense ERV3-16A3_I-int_dup3791|chr9:131994787-131996590:+|1.2489421627150843|0.0328321941424702|5.25|150.0|45|3|sense ERV3-16A3_I-int_dup3791|chr9:131994787-131996590:+|1.2489421627150843|0.0328321941424702|5.25|150.0|45|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 584.3484497070312 2 584.347866 1166.68118 0.50893 0.00029739 0.17795 0.00010399 0.68689 0.00040138 584.3481040847972 42.638 0.042809 42.638 42.604 42.646 0 4 2 2 0 0 0 0.50088 1 8447 8447 0.52476 0 1 791910 58889 7710 37225 37244 67804 67804 0.10450570673765469 YYIMIKGLI 9 Unmodified _YYIMIKGLI_ 0 0 0 L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|16|2|sense L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|16|2|sense L1MEg_dup3578|chr4:25169074-25170058:+|1.1350647858963312|0.0307255698913846|5.21|151.0|16|2|sense MSMS UPN47_class_I_Rep_1 2 557.3208618164062 2 557.322471 1112.63039 NaN NaN NaN NaN NaN NaN NaN 22.26 1 25.935 25.435 26.435 3.6749 0 0 0 0.4029 1 2558 2558 0 0 1 58890 13383 37226 37245 67805 67805 0.07857905304558699 YYIRGLFN 8 Unmodified _YYIRGLFN_ 0 0 0 REV__Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|73|3|sense REV__Tigger1_dup7957|chr10:21879650-21881872:-|2.1989217437702746|0.0842992553966616|4.71|151.0|73|3|sense MSMS UPN47_class_I_Rep_3 4 523.2892456054688 2 523.276909 1044.53927 NaN NaN NaN NaN NaN NaN NaN 67.438 1 70.63 70.13 71.13 3.1914 0 0 0 0.39624 1 16329 16329 9.3474 0.75416 1 + 58891 32531 37227 37246 67806 67806 0.01877777651429824 YYISPRLTF 9 Unmodified _YYISPRLTF_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN48_class_I_Rep_1 5 580.3107299804688 2 580.310949 1158.60735 0.51232 0.0002973 -0.11764 -6.8268E-05 0.39468 0.00022904 580.310834387926 64.918 0.7763 68.373 68.057 68.833 3.4541 138 59 3 0 0 0 0.13244 2 14652 14652;14696 27.629 0 1 345530 58892 3716 37228 37247 67807;67808 67807 0.034386025114145014 YYISPRLTF 9 Unmodified _YYISPRLTF_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN48_class_I_Rep_2 6 580.310791015625 2 580.310949 1158.60735 0.51272 0.00029754 -0.074079 -4.2989E-05 0.43864 0.00025455 580.3107797229579 64.741 0.72888 68.221 67.955 68.684 3.4792 122 51 3 0 0 0 0.13244 1 14603 14603 27.629 0 1 403190 58893 3716 37228 37247 67809 67809 0.034386025114145014 YYISPRLTF 9 Unmodified _YYISPRLTF_ 0 0 0 ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;nc|ENSG00000155926|Q13239-2|SLA ENSG00000155926|ENST00000338087|SLA ENSG00000155926|ENST00000338087|SLA MULTI-MSMS UPN48_class_I_Rep_3 7 580.310791015625 2 580.310949 1158.60735 0.51718 0.00030013 -0.065484 -3.8001E-05 0.4517 0.00026212 580.31082543709 64.658 0.78543 68.166 67.782 68.567 3.5083 142 66 3 0 0 0 0.081756 1 14515 14515 38.176 0 1 388950 58894 3716 37228 37247 67810 67810 0.034386025114145014 YYISVEIDR 9 Unmodified _YYISVEIDR_ 0 0 0 REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|104|2|anti-sense REV__L1MB5_dup5932|chr11:45956569-45958297:+|1.5301916725614584|0.0432503272788182|5.14|151.0|104|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 580.311279296875 2 579.295496 1156.57644 0.5148 0.00029822 -2.4161 -0.0013997 -1.9013 -0.0011014 579.2933541007496 64.625 0.13474 68.134 68.074 68.208 3.5083 30 13 3 0 0 0 0.25207 1 14549 14549 16.942 0 1 112040 + 58895 26078 37229 37248 67811 67811 0.004414044065015332 YYITTRAQF 9 Unmodified _YYITTRAQF_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN nc|ENSG00000010810|P06241-3|FYN MULTI-MSMS UPN48_class_I_Rep_1 5 581.7988891601562 2 581.798206 1161.58186 0.39986 0.00023264 0.25823 0.00015024 0.65809 0.00038288 582.3001267637554 48.96 0.43484 52.484 52.261 52.695 3.5239 67 35 2 0 0 0 0.15547 3 9856 9800;9856;9869 24.991 8.0487 1 169440 58896 763 37230 37249 67812;67813;67814 67813 0.007531279889917641 YYITTRAQF 9 Unmodified _YYITTRAQF_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN nc|ENSG00000010810|P06241-3|FYN MULTI-MSMS UPN48_class_I_Rep_2 6 581.7973022460938 2 581.798206 1161.58186 0.4004 0.00023295 0.15946 9.2773E-05 0.55986 0.00032573 581.798090165628 48.69 0.3342 52.407 52.343 52.678 3.7175 31 20 2 0 0 0 0.16799 3 9788 9747;9788;9835 23.79 7.3383 1 115670 58897 763 37230 37249 67815;67816;67817 67816 0.007531279889917641 YYITTRAQF 9 Unmodified _YYITTRAQF_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN nc|ENSG00000010810|P06241-3|FYN MULTI-MSMS UPN48_class_I_Rep_3 7 581.7987670898438 2 581.798206 1161.58186 0.39795 0.00023153 0.10356 6.0249E-05 0.50151 0.00029178 581.7981750345223 48.965 0.44265 52.594 52.344 52.786 3.6291 50 34 2 0 0 0 0.12795 3 9768 9759;9768;9818 28.495 10.36 1 148950 58898 763 37230 37249 67818;67819;67820 67819 0.007531279889917641 YYITTRVQF 9 Unmodified _YYITTRVQF_ 0 0 0 ENSG00000000938|ENST00000374005|FGR ENSG00000000938|ENST00000374005|FGR ENSG00000000938|ENST00000374005|FGR MULTI-MSMS UPN48_class_I_Rep_1 5 595.8134765625 2 595.813856 1189.61316 0.52067 0.00031022 0.11588 6.9045E-05 0.63655 0.00037927 595.813852591772 57.644 0.68285 61.138 60.81 61.493 3.4942 118 55 3 0 0 0 0.079935 2 12537 12483;12537 38.615 25.572 1 340730 58899 665 37231 37250 67821;67822 67822 0.025937010230791202 YYITTRVQF 9 Unmodified _YYITTRVQF_ 0 0 0 ENSG00000000938|ENST00000374005|FGR ENSG00000000938|ENST00000374005|FGR ENSG00000000938|ENST00000374005|FGR MULTI-MSMS UPN48_class_I_Rep_2 6 595.8145751953125 2 595.813856 1189.61316 0.58549 0.00034884 -0.05675 -3.3812E-05 0.52874 0.00031503 595.8138197880968 57.625 0.53345 61.139 60.869 61.403 3.5142 89 41 3 0 0 0 0.038999 3 12449 12449;12496;12545 53.404 35.031 1 428270 58900 665 37231 37250 67823;67824;67825 67823 0.025937010230791202 YYITTRVQF 9 Unmodified _YYITTRVQF_ 0 0 0 ENSG00000000938|ENST00000374005|FGR ENSG00000000938|ENST00000374005|FGR ENSG00000000938|ENST00000374005|FGR MULTI-MSMS UPN48_class_I_Rep_3 7 595.814208984375 2 595.813856 1189.61316 0.4509 0.00026865 0.06644 3.9586E-05 0.51734 0.00030824 595.8138158977464 57.506 0.59426 61.037 60.75 61.344 3.5317 109 51 3 0 0 0 0.04399 3 12369 12333;12369;12407 51.415 33.042 1 297810 58901 665 37231 37250 67826;67827;67828 67827 0.025937010230791202 YYIYAHIY 8 Unmodified _YYIYAHIY_ 0 0 0 REV__L1PB1_dup11816|chr17:45204086-45205034:-|1.112025080690361|0.0103781104414136|6.74|151.0|56|3|anti-sense REV__L1PB1_dup11816|chr17:45204086-45205034:-|1.112025080690361|0.0103781104414136|6.74|151.0|56|3|anti-sense MSMS UPN46_class_I_Rep_3 1 553.2721557617188 2 553.271293 1104.52803 NaN NaN NaN NaN NaN NaN NaN 15.916 1 15.916 15.416 16.416 0 0 0 0 0.40738 1 994 994 0.79363 0 1 + 58902 30330 37232 37251 67829 67829 -0.020050444426942704 YYIYHYHF 8 Unmodified _YYIYHYHF_ 0 0 0 REV__Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|18|2|sense REV__Tigger1_dup4961|chr6:78992454-78994295:+|1.164299673152568|0.1488773928504158|2.97|151.0|18|2|sense MSMS UPN48_class_I_Rep_1 5 603.272216796875 2 603.274367 1204.53418 NaN NaN NaN NaN NaN NaN NaN 28.495 1 32.052 31.552 32.552 3.5571 0 0 0 0.40738 1 3822 3822 0.79363 0 1 + 58903 32458 37233 37252 67830 67830 -0.05990526211212455 YYIYLFIAQ 9 Unmodified _YYIYLFIAQ_ 0 0 0 REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF MULTI-MSMS UPN48_class_I_Rep_1 5 597.315185546875 2 597.3157 1192.61685 0.4526 0.00027034 -0.87529 -0.00052282 -0.42269 -0.00025248 597.3150810722715 73.868 0.049965 77.349 77.329 77.379 3.4812 5 3 2 0 0 0 0.25207 1 17436 17436 16.942 7.5592 1 79745 + 58904 22075 37234 37253 67831 67831 0.028243707969522802 YYIYLFIAQ 9 Unmodified _YYIYLFIAQ_ 0 0 0 REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 597.3157 1192.61685 0.4526 0.00027034 -0.87529 -0.00052282 -0.42269 -0.00025248 597.3150810722715 73.868 0.049965 77.349 77.329 77.379 3.4812 0.062243 -1.0313E-05 NaN 16.942 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 79745 + 58905 22075 37234 37253 0.028243707969522802 YYIYLFIAQ 9 Unmodified _YYIYLFIAQ_ 0 0 0 REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF MULTI-MATCH UPN48_class_I_Rep_2 6 2 597.3157 1192.61685 0.47808 0.00028557 -0.78164 -0.00046689 -0.30356 -0.00018132 597.8165975610683 73.647 0.04985 77.224 77.192 77.242 3.5779 -0.062243 0.00010156 NaN 16.942 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 108130 + 58906 22075 37234 37253 0.028243707969522802 YYIYLFTY 8 Unmodified _YYIYLFTY_ 0 0 0 REV__L1ME3A_dup3280|chr3:125251369-125252499:-|3.0999918211493984|0.0741565523884442|5.39|151.0|12|1|sense REV__L1ME3A_dup3280|chr3:125251369-125252499:-|3.0999918211493984|0.0741565523884442|5.39|151.0|12|1|sense MSMS UPN47_class_I_Rep_3 4 573.2793579101562 2 573.281326 1144.5481 NaN NaN NaN NaN NaN NaN NaN 77.1 1 80.369 79.869 80.869 3.269 0 0 0 0.40625 1 19187 19187 2.3027 0 1 + 58907 28011 37235 37254 67832 67832 -0.01839293502757755 YYIYLVYL 8 Unmodified _YYIYLVYL_ 0 0 0 REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.3004150390625 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 74.53 1 77.923 77.423 78.423 3.3937 0 0 0 0.4032 1 18348 18348 6.3541 0 1 + 58908 24604 37236 37255 67833 67833 0.0345358339395716 YYIYLVYL 8 Unmodified _YYIYLVYL_ 0 0 0 REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.3014526367188 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 74.603 1 77.997 77.497 78.497 3.3937 0 0 0 0.39167 1 18369 18369 11.114 0 1 + 58909 24604 37236 37255 67834 67834 0.0345358339395716 YYIYLVYL 8 Unmodified _YYIYLVYL_ 0 0 0 REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2999267578125 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 83.113 1 86.651 86.151 87.151 3.5386 0 0 0 0.40738 1 20779 20779 0.79363 0 1 + 58910 24604 37236 37255 67835 67835 0.0345358339395716 YYIYLVYL 8 Unmodified _YYIYLVYL_ 0 0 0 REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense REV__L1M4c_dup635|chr3:114635320-114636905:+|1.5045337438254778|0.0285429731852747|5.72|151.0|71|2|anti-sense MSMS UPN47_class_I_Rep_2 3 555.3001098632812 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 78.192 1 81.534 81.034 82.034 3.3428 0 0 0 0.39167 1 19418 19418 11.114 0 1 + 58911 24604 37236 37255 67836 67836 0.0345358339395716 YYKERRIKYT 10 Unmodified _YYKERRIKYT_ 0 0 0 REV__L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|18|3|sense REV__L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|18|3|sense MULTI-SECPEP UPN48_class_I_Rep_1 5 474.2825012207031 3 473.929621 1418.76703 0.092276 4.3732E-05 -2.815 -0.0013341 -2.7227 -0.0012904 473.92793859982623 110.75 0.044708 114.38 114.35 114.4 3.6326 6 5 2 0 0 0 0.84575 1 26873 26873 0.69767 0.24315 1 15368 + 58912 26967 37237 37256 67837 67837 0.07440110788616039 YYKERRIKYT 10 Unmodified _YYKERRIKYT_ 0 0 0 REV__L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|18|3|sense REV__L1MC4a_dup10245|chr22:31428513-31429161:-|1.0808476392361686|0.0864127459639299|3.64|151.0|18|3|sense MULTI-SECPEP UPN48_class_I_Rep_2 6 474.2824401855469 3 473.929621 1418.76703 0.21699 0.00010284 -2.709 -0.0012839 -2.492 -0.001181 474.26284484280785 110.02 0.08725 113.69 113.68 113.76 3.6715 15 11 2 0 0 0 0.84575 1 26204 26204 0.69767 0.19171 1 139560 + 58913 26967 37237 37256 67838 67838 0.07440110788616039 YYKILGVK 8 Unmodified _YYKILGVK_ 0 0 0 ENSG00000102580|ENST00000602402|DNAJC3 ENSG00000102580|ENST00000602402|DNAJC3 ENSG00000102580|ENST00000602402|DNAJC3 MSMS UPN47_class_I_Rep_1 2 492.30029296875 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 45.609 1 49.309 48.809 49.809 3.6999 0 0 0 0.40738 1 9596 9596 0.79363 0 1 58914 1619 37238 37257 67839 67839 0.09316422833671822 YYKKFRDF 8 Unmodified _YYKKFRDF_ 0 0 0 L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|55|3|anti-sense L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|55|3|anti-sense L1MC5_dup15152|chr22:40085225-40085838:-|1.6822142848095654|0.0091708976719727|7.52|150.0|55|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_3 4 583.8042602539062 2 583.803291 1165.59203 -0.20628 -0.00012043 -0.55465 -0.00032381 -0.76094 -0.00044424 583.8031281746207 28.531 0.68739 31.865 31.525 32.212 3.3338 75 59 2 0 0 0 0.82752 1 4519 4519 2.0598 0 1 60660 58915 11673 37239 37258 67840 67840 0.01585735714229486 YYKKHKNRH 9 Unmodified _YYKKHKNRH_ 0 0 0 REV__L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|26|2|sense REV__L1MB7_dup17572|chr14:76218045-76219584:+|1.0437772576722686|0.0913965832522082|3.51|151.0|26|2|sense MSMS UPN47_class_I_Rep_2 3 637.3483276367188 2 637.349263 1272.68397 NaN NaN NaN NaN NaN NaN NaN 77.679 1 81.021 80.521 81.521 3.3428 0 0 0 0.40038 1 19281 19281 0.6015 0 1 + 58916 26170 37240 37259 67841 67841 0.058538388512715755 YYKKRENF 8 Unmodified _YYKKRENF_ 0 0 0 L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|119|2|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|119|2|sense L1PA14_dup2749|chr15:85447378-85454630:-|1.7942197657942445|0.0592864821423732|4.92|151.0|119|2|sense MSMS UPN47_class_I_Rep_2 3 574.2977294921875 2 574.298373 1146.58219 NaN NaN NaN NaN NaN NaN NaN 64.431 1 67.687 67.187 68.187 3.2556 0 0 0 0.40753 1 15349 15349 0.6015 0 1 58917 13846 37241 37260 67842 67842 0.014765477088531043 YYKKTYRNT 9 Unmodified _YYKKTYRNT_ 0 0 0 REV__L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|31|2|sense REV__L1MD1_dup1383|chr3:123265964-123267932:-|1.054747057635161|0.2154361952724743|2.29|150.0|31|2|sense MSMS UPN48_class_I_Rep_3 7 618.82275390625 2 618.822212 1235.62987 NaN NaN NaN NaN NaN NaN NaN 71.64 1 75.166 74.666 75.666 3.5266 0 0 0 0.39326 1 16651 16651 2.3027 0 1 + 58918 27294 37242 37261 67843 67843 0.021482019090399262 YYKKWWLI 8 Unmodified _YYKKWWLI_ 0 0 0 REV__ENST00000579647.1_1_18:2653155-2653212:-|nuORF REV__ENST00000579647.1_1_18:2653155-2653212:-|nuORF MULTI-MSMS UPN46_class_I_Rep_3 1 600.3345947265625 2 600.334227 1198.6539 -0.02078 -1.2475E-05 -0.59612 -0.00035787 -0.6169 -0.00037034 600.3338012712095 13.216 0.16939 13.216 13.163 13.333 0 24 17 2 0 0 0 0.82752 1 329 329 0.69038 0.16561 1 28821 + 58919 23121 37243 37262 67844 67844 0.06252087133384521 YYKLVLHY 8 Unmodified _YYKLVLHY_ 0 0 0 REV__ENST00000498732.5_1_X:139854537-139854750:+|nuORF REV__ENST00000498732.5_1_X:139854537-139854750:+|nuORF MULTI-SECPEP UPN47_class_I_Rep_2 3 549.3010864257812 2 549.80276 1097.59097 0.61834 0.00033996 -1.0062 -0.0005532 -0.38784 -0.00021323 549.8022489597784 101.17 0.033813 104.68 104.66 104.69 3.5063 6 4 2 0 0 0 0.72333 1 24701 24701 2.8892 0.31174 1 61113 + 58920 22682 37244 37263 67845 67845 0.04607521345337773 YYKMVCSIE 9 Unmodified _YYKMVCSIE_ 0 0 0 REV__MER58B_dup5902|chr17:38910213-38910557:-|1.134026752891835|0.0824828870663391|3.78|151.0|16|2|anti-sense REV__MER58B_dup5902|chr17:38910213-38910557:-|1.134026752891835|0.0824828870663391|3.78|151.0|16|2|anti-sense MULTI-SECPEP UPN48_class_I_Rep_3 7 567.8192749023438 2 568.261753 1134.50895 0.37537 0.00021331 -0.34177 -0.00019421 0.033609 1.9098E-05 568.2617689964408 47.217 0.37155 50.854 50.518 50.889 3.6363 33 23 2 0 0 0 0.12321 1 9194 9194 3.9444 0.3479 1 135540 + 58921 31469 37245 37264 67846 67846 -0.05292085120277079 YYKMVCSIE 9 Unmodified _YYKMVCSIE_ 0 0 0 REV__MER58B_dup5902|chr17:38910213-38910557:-|1.134026752891835|0.0824828870663391|3.78|151.0|16|2|anti-sense REV__MER58B_dup5902|chr17:38910213-38910557:-|1.134026752891835|0.0824828870663391|3.78|151.0|16|2|anti-sense MULTI-MATCH UPN48_class_I_Rep_2 6 2 568.261753 1134.50895 0.38987 0.00022155 0.92987 0.00052841 1.3197 0.00074995 568.2620430403465 47.189 0.044285 50.939 50.919 50.964 3.7494 0.042677 0.001076 NaN 3.9444 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 73720 + 58922 31469 37245 37264 -0.05292085120277079 YYKNRILLKR 10 Unmodified _YYKNRILLKR_ 0 0 0 HAL1_dup1749|chr1:234473009-234473958:+|4.083802153456575|0.2986259234769191|3.77|151.0|32|3|sense HAL1_dup1749|chr1:234473009-234473958:+|4.083802153456575|0.2986259234769191|3.77|151.0|32|3|sense HAL1_dup1749|chr1:234473009-234473958:+|4.083802153456575|0.2986259234769191|3.77|151.0|32|3|sense MSMS UPN47_class_I_Rep_1 2 456.2811584472656 3 456.282106 1365.82449 NaN NaN NaN NaN NaN NaN NaN 114.05 1 117.62 117.12 118.12 3.572 0 0 0 0.53105 1 28171 28171 0.15932 0 1 58923 7834 37246 37265 67847 67847 0.15620997784822066 YYKTLLTEI 9 Unmodified _YYKTLLTEI_ 0 0 0 L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|72|2|sense L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|72|2|sense L1PA13_dup6811|chr12:10975086-10978900:+|1.0466881348218051|0.0778563503911089|3.75|151.0|72|2|sense MSMS UPN48_class_I_Rep_2 6 572.2764282226562 2 572.31844 1142.62233 NaN NaN NaN NaN NaN NaN NaN 64.475 1 67.95 67.45 68.45 3.4743 0 0 0 0.38299 1 14579 14579 4.756 0 1 58924 13787 37247 37266 67848 67848 0.056720495887930156 YYKVIYNKC 9 Unmodified _YYKVIYNKC_ 0 0 0 L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|5|1|sense L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|5|1|sense L1M5_dup9115|chr3:17727574-17728415:+|1.589954832730475|0.1106535970622503|3.84|151.0|5|1|sense MSMS UPN48_class_I_Rep_3 7 597.3753051757812 2 597.30481 1192.59507 NaN NaN NaN NaN NaN NaN NaN 45.446 1 49.083 48.583 49.583 3.6369 0 0 0 0.39518 1 8702 8702 1.8442 0 1 58925 9209 37248 37267 67849 67849 0.0064724277674486075 YYLCLHWS 8 Unmodified _YYLCLHWS_ 0 0 0 Tigger1_dup12075|chr22:50353073-50353716:-|1.1456462185762668|0.01734913718787|6.05|151.0|39|3|anti-sense Tigger1_dup12075|chr22:50353073-50353716:-|1.1456462185762668|0.01734913718787|6.05|151.0|39|3|anti-sense Tigger1_dup12075|chr22:50353073-50353716:-|1.1456462185762668|0.01734913718787|6.05|151.0|39|3|anti-sense MSMS UPN47_class_I_Rep_1 2 542.7496948242188 2 542.74967 1083.48479 NaN NaN NaN NaN NaN NaN NaN 23.17 1 26.875 26.375 27.375 3.7042 0 0 0 0.40738 1 2821 2821 0.79363 0 1 58926 33031 37249 37268 67850 67850 -0.05361557491642088 YYLFIAVRY 9 Unmodified _YYLFIAVRY_ 0 0 0 REV__HAL1_dup2960|chr2:113948450-113948968:-|3.100003781594017|0.1323832754535524|4.55|151.0|34|2|anti-sense REV__HAL1_dup2960|chr2:113948450-113948968:-|3.100003781594017|0.1323832754535524|4.55|151.0|34|2|anti-sense MSMS UPN48_class_I_Rep_1 5 604.7693481445312 2 604.329142 1206.64373 NaN NaN NaN NaN NaN NaN NaN 38.278 1 41.783 41.283 42.283 3.5052 0 0 0 0.381 1 6611 6611 5.2307 0.47466 1 + 58927 23417 37250 37269 67851 67851 0.04867479408130748 YYLFLWRF 8 Unmodified _YYLFLWRF_ 0 0 0 L1PB1_dup2010|chr3:25772220-25775304:-|3.20163005892952|0.0484391729669693|6.05|151.0|130|1|anti-sense L1PB1_dup2010|chr3:25772220-25775304:-|3.20163005892952|0.0484391729669693|6.05|151.0|130|1|anti-sense L1PB1_dup2010|chr3:25772220-25775304:-|3.20163005892952|0.0484391729669693|6.05|151.0|130|1|anti-sense MSMS UPN48_class_I_Rep_2 6 604.569091796875 2 604.318577 1206.6226 NaN NaN NaN NaN NaN NaN NaN 34.334 1 38.008 37.508 38.508 3.6735 0 0 0 0.40738 1 5521 5521 0.79363 0 1 58928 15066 37251 37270 67852 67852 0.027555140992490124 YYLGLGRHGQ 10 Unmodified _YYLGLGRHGQ_ 0 0 0 L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_3 7 582.2999267578125 2 582.301447 1162.58834 0.40469 0.00023565 -1.2212 -0.00071109 -0.81648 -0.00047544 582.300419711162 48.557 0.67067 52.191 51.821 52.492 3.6339 89 51 3 0 0 0 0.55873 1 9718 9718 4.3292 1.44 1 152050 58929 8566 37252 37271 67853 67853 0.013550659403790632 YYLHHLHHF 9 Unmodified _YYLHHLHHF_ 0 0 0 L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|108|2|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|108|2|anti-sense L1ME3A_dup12789|chr15:71912556-71914383:-|2.726453728899358|0.0765176969278667|5.16|151.0|108|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 633.8115234375 2 633.811982 1265.60941 0.45374 0.00028758 -1.1281 -0.000715 -0.67436 -0.00042741 633.8111845873922 62.256 0.63668 65.624 65.372 66.009 3.3681 56 40 2 0 0 0 0.48414 1 14613 14613 2.3027 0.4585 1 104730 58930 12634 37253 37272 67854 67854 -0.012769239601084337 YYLHHSPWWFH 11 Unmodified _YYLHHSPWWFH_ 0 0 0 ENSG00000103227.19,LMF1,chr16,-,I19.1,856056,868943|87|6.47|1|intron;nc|ENSG00000103227|Q96S06-2|LMF1;ENSG00000103227|ENST00000262301|LMF1 ENSG00000103227.19,LMF1,chr16,-,I19.1,856056,868943|87|6.47|1|intron ENSG00000103227.19,LMF1,chr16,-,I19.1,856056,868943|87|6.47|1|intron MSMS UPN48_class_I_Rep_3 7 524.910888671875 3 524.910561 1571.70985 NaN NaN NaN NaN NaN NaN NaN 25.636 1 29.405 28.905 29.905 3.769 0 0 0 0.38417 1 3147 3147 0.094841 0 1 58931 1651 37254 37273 67855 67855 -0.053133116971139316 YYLHPKVM 8 Unmodified _YYLHPKVM_ 0 0 0 REV__AluSx_dup97025|chr17:30713159-30713470:+|1.9267630004438936|0.0119405631503483|7.33|151.0|6|2|sense REV__AluSx_dup97025|chr17:30713159-30713470:+|1.9267630004438936|0.0119405631503483|7.33|151.0|6|2|sense MSMS UPN46_class_I_Rep_3 1 525.7755737304688 2 525.775688 1049.53682 NaN NaN NaN NaN NaN NaN NaN 111.43 1 111.43 110.93 111.93 0 0 0 0 0.40738 1 27475 27475 0.79363 0 1 + 58932 17098 37255 37274 67856 67856 0.014036059221098185 YYLISFRVC 9 Unmodified _YYLISFRVC_ 0 0 0 REV__MER47A_dup779|chr5:70967604-70967965:+|1.3229520850879202|0.1663208279979695|2.99|148.0|13|3|sense REV__MER47A_dup779|chr5:70967604-70967965:+|1.3229520850879202|0.1663208279979695|2.99|148.0|13|3|sense MSMS UPN48_class_I_Rep_1 5 582.3003540039062 2 582.299527 1162.5845 NaN NaN NaN NaN NaN NaN NaN 49.173 1 52.697 52.197 53.197 3.5239 0 0 0 0.381 1 9908 9908 5.2307 0 1 + 58933 31338 37256 37275 67857 67857 0.009712601223100137 YYLISRYY 8 Unmodified _YYLISRYY_ 0 0 0 L1ME1_dup23983|chr13:72936336-72936987:-|1.069974679643637|0.0112762876514196|6.57|150.0|23|3|sense L1ME1_dup23983|chr13:72936336-72936987:-|1.069974679643637|0.0112762876514196|6.57|150.0|23|3|sense L1ME1_dup23983|chr13:72936336-72936987:-|1.069974679643637|0.0112762876514196|6.57|150.0|23|3|sense MSMS UPN47_class_I_Rep_1 2 570.7911376953125 2 570.78985 1139.56515 NaN NaN NaN NaN NaN NaN NaN 72.902 1 76.282 75.782 76.782 3.3799 0 0 0 0.4032 1 17868 17868 6.3541 0.59368 1 58934 12321 37257 37276 67858 67858 0.0009462710304433131 YYLKCYYF 8 Unmodified _YYLKCYYF_ 0 0 0 REV__L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense REV__L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 581.7686157226562 2 581.767529 1161.5205 0.37496 0.00021814 2.7529 0.0016016 3.1279 0.0018197 582.2704559550825 74.195 0.15456 77.589 77.55 77.705 3.3937 24 14 2 0 0 0 0.82752 1 18262 18262 8.5933 1.304 1 61526 + 58935 24090 37258 37277 67859 67859 -0.05379520034648522 YYLKCYYF 8 Unmodified _YYLKCYYF_ 0 0 0 REV__L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense REV__L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense MSMS UPN47_class_I_Rep_3 4 581.7706909179688 2 581.767529 1161.5205 NaN NaN NaN NaN NaN NaN NaN 74.475 1 77.722 77.222 78.222 3.2464 0 0 0 0.38547 1 18434 18434 13.508 0 1 + 58936 24090 37258 37277 67860 67860 -0.05379520034648522 YYLKCYYF 8 Unmodified _YYLKCYYF_ 0 0 0 REV__L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense REV__L1M1_dup4256|chr8:47868601-47871585:+|2.139280697602223|0.0326780017818372|6.03|151.0|177|3|anti-sense MULTI-MATCH UPN47_class_I_Rep_2 3 2 581.767529 1161.5205 0.44952 0.00026152 1.073 0.00062426 1.5226 0.00088578 582.2691522115232 74.504 0.057716 77.816 77.771 77.829 3.3127 0.11371 -0.0015804 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 38526 + 58937 24090 37258 37277 -0.05379520034648522 YYLKICVDK 9 Unmodified _YYLKICVDK_ 0 0 0 L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|129|3|anti-sense L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|129|3|anti-sense L1MEg_dup5048|chr5:115528266-115530079:+|1.6619104777404563|0.2554649330513182|2.7|151.0|129|3|anti-sense MSMS UPN48_class_I_Rep_2 6 572.8079223632812 2 572.807185 1143.59982 NaN NaN NaN NaN NaN NaN NaN 64.194 1 67.669 67.169 68.169 3.4743 0 0 0 0.35339 1 14492 14492 7.9102 0.62092 1 58938 13393 37259 37278 67861 67861 0.033761269194883425 YYLKVYPF 8 Unmodified _YYLKVYPF_ 0 0 0 L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|115|2|anti-sense L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|115|2|anti-sense L1PB1_dup5661|chr7:37137837-37140093:+|1.1884087130086247|0.012336462180157|6.59|150.0|115|2|anti-sense MSMS UPN48_class_I_Rep_2 6 546.7902221679688 2 546.791861 1091.56917 NaN NaN NaN NaN NaN NaN NaN 24.098 1 27.738 27.238 28.238 3.6397 0 0 0 0.40738 1 2742 2742 0.79363 0 1 58939 15154 37260 37279 67862 67862 0.027047165967360343 YYLLHYCG 8 Unmodified _YYLLHYCG_ 0 0 0 Tigger15a_dup3713|chr12:122100315-122100805:-|1.3162994687458502|0.0183701943948042|6.16|151.0|30|2|anti-sense Tigger15a_dup3713|chr12:122100315-122100805:-|1.3162994687458502|0.0183701943948042|6.16|151.0|30|2|anti-sense Tigger15a_dup3713|chr12:122100315-122100805:-|1.3162994687458502|0.0183701943948042|6.16|151.0|30|2|anti-sense MSMS UPN47_class_I_Rep_2 3 516.23681640625 2 516.236396 1030.45824 NaN NaN NaN NaN NaN NaN NaN 26.953 1 30.451 29.951 30.951 3.4986 0 0 0 0.40738 1 3974 3974 0.79363 0 1 58940 33239 37261 37280 67863 67863 -0.05577246382972589 YYLLWLDT 8 Unmodified _YYLLWLDT_ 0 0 0 ENST00000400556.7_1_18:9588232-9588770:-|nuORF ENST00000400556.7_1_18:9588232-9588770:-|nuORF ENST00000400556.7_1_18:9588232-9588770:-|nuORF MSMS UPN46_class_I_Rep_3 1 544.2355346679688 2 543.778951 1085.54335 NaN NaN NaN NaN NaN NaN NaN 18.697 1 18.697 18.197 19.197 0 0 0 0 0.40798 1 1673 1673 0 0 1 58941 6595 37262 37281 67864 67864 0.003998223544613211 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS UPN48_class_I_Rep_1 5 599.8092041015625 2 599.808771 1197.60299 0.57491 0.00034484 0.062046 3.7216E-05 0.63696 0.00038205 599.8086453149971 61.512 0.83921 64.98 64.681 65.52 3.4678 171 77 3 0 0 0 0.0058768 4 13711 13633;13671;13711;13751 128.57 84.801 1 1084400 58942 2075 37263 37282 67865;67866;67867;67868 67867 0.01209093297848085 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS UPN48_class_I_Rep_2 6 599.8092651367188 2 599.808771 1197.60299 0.54451 0.0003266 0.13982 8.3865E-05 0.68432 0.00041046 599.8087307231233 61.441 0.76438 64.915 64.613 65.377 3.4738 160 62 3 0 0 0 0.0058768 4 13657 13581;13617;13657;13699 128.57 92.067 1 1148200 58943 2075 37263 37282 67869;67870;67871;67872 67871 0.01209093297848085 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 nc|ENSG00000114353|P04899-6|GNAI2 MULTI-MSMS UPN48_class_I_Rep_3 7 599.8092041015625 2 599.808771 1197.60299 0.53694 0.00032206 0.17145 0.00010284 0.7084 0.0004249 599.8087365029514 61.314 0.78865 64.827 64.496 65.284 3.5129 167 66 3 0 0 0 0.0069772 4 13509 13468;13509;13546;13587 117.84 81.331 1 946380 58944 2075 37263 37282 67873;67874;67875;67876 67874 0.01209093297848085 YYLNEIQSF 9 Unmodified _YYLNEIQSF_ 0 0 0 nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L MULTI-MSMS UPN48_class_I_Rep_1 5 588.783203125 2 588.782222 1175.54989 0.45326 0.00026687 0.096794 5.699E-05 0.55005 0.00032386 588.7821278800162 71.491 0.52389 74.957 74.708 75.232 3.466 78 46 2 0 0 0 0.0094161 4 16705 16656;16665;16705;16747 70.332 34.205 1 220540 58945 3864 37264 37283 67877;67878;67879;67880 67879 -0.030862844848115856 YYLNEIQSF 9 Unmodified _YYLNEIQSF_ 0 0 0 nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L MULTI-MSMS UPN48_class_I_Rep_2 6 588.78271484375 2 588.782222 1175.54989 0.47429 0.00027925 0.20019 0.00011787 0.67448 0.00039712 588.7821916134315 71.349 0.55775 74.899 74.614 75.171 3.5505 115 56 3 0 0 0 0.0060665 4 16637 16565;16602;16637;16676 90.135 54.008 1 183850 58946 3864 37264 37283 67881;67882;67883;67884 67883 -0.030862844848115856 YYLNEIQSF 9 Unmodified _YYLNEIQSF_ 0 0 0 nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L MSMS UPN48_class_I_Rep_2 6 588.782958984375 2 588.782222 1175.54989 NaN NaN NaN NaN NaN NaN NaN 71.566 1 75.116 74.616 75.616 3.5505 0 0 0 0.26021 1 16707 16707 12.873 0.63195 1 58947 3864 37264 37283 67885 67885 -0.030862844848115856 YYLNEIQSF 9 Unmodified _YYLNEIQSF_ 0 0 0 nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L MULTI-MSMS UPN48_class_I_Rep_3 7 589.2844848632812 2 588.782222 1175.54989 0.56451 0.00033238 -0.016639 -9.7967E-06 0.54787 0.00032258 588.7820684271471 71.295 0.67844 74.814 74.526 75.204 3.5185 137 61 3 0 0 0 0.0074183 6 16526 16482;16485;16490;16526;16566;16607 110.55 62.804 1 220520 58948 3864 37264 37283 67886;67887;67888;67889;67890;67891 67889 -0.030862844848115856 YYLPFQTK 8 Unmodified _YYLPFQTK_ 0 0 0 L1MB3_dup1130|chr1:198885308-198885706:+|1.2631663342433932|0.0052098367130964|7.92|149.0|23|2|anti-sense L1MB3_dup1130|chr1:198885308-198885706:+|1.2631663342433932|0.0052098367130964|7.92|149.0|23|2|anti-sense L1MB3_dup1130|chr1:198885308-198885706:+|1.2631663342433932|0.0052098367130964|7.92|149.0|23|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 530.2784423828125 2 530.279118 1058.54368 0.32849 0.00017419 0.081618 4.328E-05 0.41011 0.00021747 530.2790603421452 87.432 0.9345 91.051 90.664 91.598 3.6187 274 105 3 0 0 0 0.82752 2 20871 20871;21069 9.3474 2.6243 1 1123000 58949 10320 37265 37284 67892;67893 67892 0.01675242074338712 YYLPPYAY 8 Unmodified _YYLPPYAY_ 0 0 0 REV__MER2_dup2169|chr3:197868148-197868482:+|1.0143685302307182|0.1046411824059585|3.28|151.0|20|3|anti-sense REV__MER2_dup2169|chr3:197868148-197868482:+|1.0143685302307182|0.1046411824059585|3.28|151.0|20|3|anti-sense MSMS UPN47_class_I_Rep_3 4 525.2542114257812 2 525.252569 1048.49058 NaN NaN NaN NaN NaN NaN NaN 31.058 1 34.37 33.87 34.87 3.3116 0 0 0 0.40581 1 5242 5242 2.8892 0.58649 1 + 58950 31142 37266 37285 67894 67894 -0.031721357083370094 YYLQGGFNKF 10 Unmodified _YYLQGGFNKF_ 0 0 0 nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 MULTI-MSMS UPN48_class_I_Rep_3 7 618.8062744140625 2 618.806031 1235.59751 0.50898 0.00031496 0.18389 0.00011379 0.69288 0.00042876 618.805851521052 57.589 0.13146 61.121 61.041 61.172 3.5317 12 9 2 0 0 0 0.54783 1 12400 12400 10.074 2.1638 1 58775 58951 4078 37267 37286 67895 67895 -0.010865854939538622 YYLRSTYY 8 Unmodified _YYLRSTYY_ 0 0 0 REV__Tigger3b_dup1663|chr4:78876774-78877951:-|1.0911925073310131|0.3449896936566214|1.66|151.0|53|1|anti-sense REV__Tigger3b_dup1663|chr4:78876774-78877951:-|1.0911925073310131|0.3449896936566214|1.66|151.0|53|1|anti-sense MSMS UPN47_class_I_Rep_2 3 564.770263671875 2 564.771657 1127.52876 NaN NaN NaN NaN NaN NaN NaN 17.702 1 21.089 20.589 21.589 3.387 0 0 0 0.40746 1 1371 1371 0.69038 0 1 + 58952 32730 37268 37287 67896 67896 -0.02990249793674593 YYLSNTMQF 9 Unmodified _YYLSNTMQF_ 0 0 0 REV__Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|42|3|sense REV__Charlie1a_dup919|chr2:173951272-173952354:-|2.108423162246637|0.0756804062165563|4.8|151.0|42|3|sense MSMS UPN47_class_I_Rep_3 4 583.7655639648438 2 583.762975 1165.5114 NaN NaN NaN NaN NaN NaN NaN 45.437 1 48.681 48.181 49.181 3.2441 0 0 0 0.37692 1 9627 9627 6.2058 0.42235 1 + 58953 17354 37269 37288 67897 67897 -0.06473913390982489 YYLTDNLTF 9 Unmodified _YYLTDNLTF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS UPN48_class_I_Rep_3 7 575.27685546875 2 575.276772 1148.53899 0.51614 0.00029692 -0.1825 -0.00010499 0.33364 0.00019194 575.2765606527329 77.943 0.47845 81.564 81.298 81.777 3.6216 82 50 2 0 0 0 0.033731 1 18425 18425 55.503 19.376 1 161910 58954 5395 37270 37289 67898 67898 -0.029336868591144594 YYLTHGLYL 9 Unmodified _YYLTHGLYL_ 0 0 0 nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU nc|ENSG00000101464|Q9H490-2|PIGU nc|ENSG00000101464|Q9H490-2|PIGU MULTI-MSMS UPN48_class_I_Rep_1 5 571.7979736328125 2 571.797675 1141.5808 0.52113 0.00029798 -0.19103 -0.00010923 0.3301 0.00018875 571.7974291827359 64.063 0.31849 67.521 67.359 67.678 3.4578 26 20 2 0 0 0 0.26948 1 14513 14513 15.847 4.2069 1 118620 58955 1575 37271 37290 67899 67899 0.0156691362010406 YYLTTHPRK 9 Unmodified _YYLTTHPRK_ 0 0 0 REV__L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|29|2|sense REV__L1MB7_dup6830|chr5:132905523-132906755:+|1.3601609140312432|0.0836161479143329|4.02|151.0|29|2|sense MSMS UPN48_class_I_Rep_3 7 589.8203125 2 589.819473 1177.62439 NaN NaN NaN NaN NaN NaN NaN 74.836 1 78.402 77.902 78.902 3.5659 0 0 0 0.34056 1 17548 17548 8.5933 3.3626 1 + 58956 26300 37272 37291 67900 67900 0.042685231172072235 YYLVFLLE 8 Unmodified _YYLVFLLE_ 0 0 0 L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|331|2|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|331|2|anti-sense L1MA2_dup6429|chr14:66857582-66864490:+|1.8690635769799695|0.2246970055267932|3.06|150.0|331|2|anti-sense MSMS UPN48_class_I_Rep_2 6 530.2919921875 2 530.291694 1058.56883 NaN NaN NaN NaN NaN NaN NaN 27.34 1 30.971 30.471 31.471 3.6311 0 0 0 0.40604 1 3609 3609 2.5775 0 1 58957 9424 37273 37292 67901 67901 0.0418929687691616 YYLYLKKIH 9 Unmodified _YYLYLKKIH_ 0 0 0 REV__Tigger1_dup3008|chr4:37608931-37610449:+|1.4320577732203337|0.0822263247265551|4.12|151.0|67|2|anti-sense REV__Tigger1_dup3008|chr4:37608931-37610449:+|1.4320577732203337|0.0822263247265551|4.12|151.0|67|2|anti-sense MSMS UPN48_class_I_Rep_3 7 620.85791015625 2 620.858067 1239.70158 NaN NaN NaN NaN NaN NaN NaN 75.567 1 79.132 78.632 79.632 3.5659 0 0 0 0.40038 1 17759 17759 0.6015 0.076735 1 + 58958 32414 37274 37293 67902 67902 0.09131741333567334 YYLYRRHRLKE 11 Unmodified _YYLYRRHRLKE_ 0 0 0 REV__L1ME3A_dup12747|chr15:64636912-64637994:-|3.962256489057254|0.0825085102095395|5.59|150.0|16|2|sense REV__L1ME3A_dup12747|chr15:64636912-64637994:-|3.962256489057254|0.0825085102095395|5.59|150.0|16|2|sense MSMS UPN48_class_I_Rep_3 7 532.9647216796875 3 532.963436 1595.86848 NaN NaN NaN NaN NaN NaN NaN 110.09 1 113.76 113.26 114.26 3.67 0 0 0 0.38417 1 26140 26140 0.08335 0 1 + 58959 27992 37275 37294 67903 67903 0.0943798221119323 YYMARLQI 8 Unmodified _YYMARLQI_ 0 0 0 MSTA-int_dup1111|chr6:2324314-2325918:+|2.8356352985679267|0.0695640520035331|5.35|151.0|70|2|anti-sense MSTA-int_dup1111|chr6:2324314-2325918:+|2.8356352985679267|0.0695640520035331|5.35|151.0|70|2|anti-sense MSTA-int_dup1111|chr6:2324314-2325918:+|2.8356352985679267|0.0695640520035331|5.35|151.0|70|2|anti-sense MSMS UPN48_class_I_Rep_1 5 529.2666015625 2 529.278595 1056.54264 NaN NaN NaN NaN NaN NaN NaN 119.77 1 123.39 122.89 123.89 3.6189 0 0 0 0.40738 1 29237 29237 0.79363 0 1 58960 16539 37276 37295 67904 67904 0.016627044337838015 YYMFLFQY 8 Unmodified _YYMFLFQY_ 0 0 0 REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|123|2|sense REV__L1MB7_dup7693|chr6:69765227-69770534:-|4.269556095223133|0.0283031974783145|7.24|151.0|123|2|sense MSMS UPN47_class_I_Rep_3 4 587.7682495117188 2 587.767529 1173.5205 NaN NaN NaN NaN NaN NaN NaN 49.923 1 53.149 52.649 53.649 3.2262 0 0 0 0.40604 1 10984 10984 2.5775 0.27475 1 + 58961 26308 37277 37296 67905 67905 -0.05931520034641835 YYMKDLPTSF 10 Unmodified _YYMKDLPTSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MSMS UPN48_class_I_Rep_1 5 632.7994995117188 2 632.799557 1263.58456 NaN NaN NaN NaN NaN NaN NaN 61.316 1 64.783 64.283 65.283 3.4678 0 0 0 0.53105 1 13631 13631 7.609 4.0125 1 58962 5711 37278 37297 67906 67906 -0.03668784668366243 YYMKDLPTSF 10 Unmodified _YYMKDLPTSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS UPN48_class_I_Rep_2 6 633.2923583984375 2 632.799557 1263.58456 0.55798 0.00035309 1.1211 0.00070943 1.6791 0.0010625 633.3028090298319 61.209 0.084206 64.688 64.663 64.747 3.4785 8 6 2 0 0 0 0.53414 2 13571 13571;13588 7.609 4.0125 1 45161 58963 5711 37278 37297 67907;67908 67907 -0.03668784668366243 YYMLLLFF 8 Unmodified _YYMLLLFF_ 0 0 0 REV__L1MD2_dup94|chr1:39053250-39053864:+|2.40603807284571|0.2513162602949345|3.26|151.0|31|1|anti-sense REV__L1MD2_dup94|chr1:39053250-39053864:+|2.40603807284571|0.2513162602949345|3.26|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_2 6 555.2921142578125 2 555.29064 1108.56673 NaN NaN NaN NaN NaN NaN NaN 69.996 1 73.518 73.018 74.018 3.5216 0 0 0 0.4032 1 16254 16254 6.3541 0 1 + 58964 27451 37279 37298 67909 67909 0.01678544867445453 YYMLLLFF 8 Unmodified _YYMLLLFF_ 0 0 0 REV__L1MD2_dup94|chr1:39053250-39053864:+|2.40603807284571|0.2513162602949345|3.26|151.0|31|1|anti-sense REV__L1MD2_dup94|chr1:39053250-39053864:+|2.40603807284571|0.2513162602949345|3.26|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 555.2930297851562 2 555.29064 1108.56673 NaN NaN NaN NaN NaN NaN NaN 69.8 1 73.313 72.813 73.813 3.5128 0 0 0 0.39167 1 16106 16106 11.114 0 1 + 58965 27451 37279 37298 67910 67910 0.01678544867445453 YYMLLLFF 8 Unmodified _YYMLLLFF_ 0 0 0 REV__L1MD2_dup94|chr1:39053250-39053864:+|2.40603807284571|0.2513162602949345|3.26|151.0|31|1|anti-sense REV__L1MD2_dup94|chr1:39053250-39053864:+|2.40603807284571|0.2513162602949345|3.26|151.0|31|1|anti-sense MSMS UPN48_class_I_Rep_3 7 555.29248046875 2 555.29064 1108.56673 NaN NaN NaN NaN NaN NaN NaN 70.102 1 73.615 73.115 74.115 3.5128 0 0 0 0.4032 1 16198 16198 6.3541 0 1 + 58966 27451 37279 37298 67911 67911 0.01678544867445453 YYMMWQLERCR 11 Unmodified _YYMMWQLERCR_ 0 0 0 nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-2|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 nc|ENSG00000165181|Q5VXU9-3|SHOC1 MSMS UPN47_class_I_Rep_1 2 526.797119140625 3 526.905325 1577.69415 NaN NaN NaN NaN NaN NaN NaN 29.328 1 33.086 32.586 33.586 3.7578 0 0 0 0.38417 1 4643 4643 0.40827 0.24894 1 58967 4163 37280 37299 67912 67912 -0.07159425592340085 YYMNKDWW 8 Unmodified _YYMNKDWW_ 0 0 0 REV__ENSG00000075673|ENST00000381946|ATP12A REV__ENSG00000075673|ENST00000381946|ATP12A MSMS UPN46_class_I_Rep_3 1 603.2568969726562 2 603.257859 1204.50117 NaN NaN NaN NaN NaN NaN NaN 116.33 1 116.33 115.83 116.83 0 0 0 0 0.40746 1 28794 28794 0.69038 0.088878 1 + 58968 17860 37281 37300 67913 67913 -0.09290476325531927 YYMTHICW 8 Unmodified _YYMTHICW_ 0 0 0 REV__L1MD2_dup9259|chr16:68145446-68145988:+|1.7492568719493742|0.0387499337075485|5.5|151.0|1|1|sense REV__L1MD2_dup9259|chr16:68145446-68145988:+|1.7492568719493742|0.0387499337075485|5.5|151.0|1|1|sense MSMS UPN46_class_I_Rep_3 1 558.7349853515625 2 558.735706 1115.45686 NaN NaN NaN NaN NaN NaN NaN 117.26 1 117.26 116.76 117.76 0 0 0 0 0.40604 1 29059 29059 2.5775 0 1 + 58969 27449 37282 37301 67914 67914 -0.09625203743371458 YYNFRIHY 8 Unmodified _YYNFRIHY_ 0 0 0 L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|191|3|anti-sense L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|191|3|anti-sense L1PA11_dup258|chr1:220257408-220260765:+|1.1154301893878544|0.0464637325630677|4.59|150.0|191|3|anti-sense MSMS UPN48_class_I_Rep_3 7 588.2855834960938 2 588.285266 1174.55598 NaN NaN NaN NaN NaN NaN NaN 36.466 1 40.133 39.633 40.633 3.6667 0 0 0 0.40746 1 6040 6040 0.69038 0.088878 1 58970 13662 37283 37302 67915 67915 -0.02431721462630776 YYNQQIYF 8 Unmodified _YYNQQIYF_ 0 0 0 REV__L1MB3_dup16476|chr20:35405849-35406989:+|1.2476832223946344|0.1230638956869024|3.34|151.0|10|1|sense REV__L1MB3_dup16476|chr20:35405849-35406989:+|1.2476832223946344|0.1230638956869024|3.34|151.0|10|1|sense MSMS UPN47_class_I_Rep_2 3 569.76220703125 2 569.763832 1137.51311 NaN NaN NaN NaN NaN NaN NaN 35.602 1 39.013 38.513 39.513 3.4114 0 0 0 0.39624 1 6584 6584 9.3474 2.0582 1 + 58971 25839 37284 37303 67916 67916 -0.05014536310727635 YYNVNGGVI 9 Unmodified _YYNVNGGVI_ 0 0 0 REV__L1PB1_dup5637|chr7:30265317-30265730:-|1.2613502603174669|0.0289938709904824|5.44|151.0|12|3|sense REV__L1PB1_dup5637|chr7:30265317-30265730:-|1.2613502603174669|0.0289938709904824|5.44|151.0|12|3|sense MULTI-MSMS UPN48_class_I_Rep_3 7 499.75128173828125 2 499.750724 997.486896 0.31933 0.00015958 -0.096064 -4.8008E-05 0.22326 0.00011158 499.7506337044975 69.22 0.5604 72.73 72.457 73.017 3.51 66 42 2 0 0 0 0.33654 1 15917 15917 11.64 0.14559 1 124590 + 58972 30447 37285 37304 67917 67917 -0.011948054821687037 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-MSMS UPN48_class_I_Rep_1 5 589.3442993164062 2 589.281857 1176.54916 0.42055 0.00024782 0.37756 0.00022249 0.79812 0.00047031 589.2822820802469 87.15 0.18654 90.769 90.672 90.858 3.6187 26 22 2 0 0 0 0.31407 3 20878 20868;20878;20880 13.042 5.1323 1 62705 58973 1605 37286 37305 67918;67919;67920 67919 -0.032050791338633644 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MSMS UPN48_class_I_Rep_1 5 589.2814331054688 2 589.281857 1176.54916 NaN NaN NaN NaN NaN NaN NaN 86.837 1 90.45 89.95 90.95 3.613 0 0 0 0.38639 1 20804 20804 3.9444 0.66309 1 58974 1605 37286 37305 67921 67921 -0.032050791338633644 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MSMS UPN48_class_I_Rep_1 5 589.2828979492188 2 589.281857 1176.54916 NaN NaN NaN NaN NaN NaN NaN 86.964 1 90.577 90.077 91.077 3.613 0 0 0 0.25702 1 20836 20836 13.042 5.1323 1 58975 1605 37286 37305 67922 67922 -0.032050791338633644 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MSMS UPN48_class_I_Rep_3 7 589.2826538085938 2 589.281857 1176.54916 NaN NaN NaN NaN NaN NaN NaN 87.094 1 90.885 90.385 91.385 3.7905 0 0 0 0.37476 1 20661 20661 6.7232 1.8262 1 58976 1605 37286 37305 67923 67923 -0.032050791338633644 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_1 5 618.8237915039062 2 618.320983 1234.62741 0.46888 0.00028992 -0.25111 -0.00015526 0.21777 0.00013465 618.3208182014772 71.191 0.18494 74.657 74.55 74.735 3.466 28 18 2 0 0 0 0.42249 1 16621 16621 6.7232 0 1 142750 58977 3845 37287 37306 67924 67924 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_1 5 618.321044921875 2 618.320983 1234.62741 0.4687 0.00028981 0.066927 4.1382E-05 0.53563 0.00033119 618.3208568348786 71.323 0.38039 74.789 74.719 75.1 3.466 60 33 4 0 0 0 0.42249 1 16673 16673 6.7232 0 1 247790 58978 3845 37287 37306 67925 67925 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_2 6 618.82275390625 2 618.320983 1234.62741 0.48382 0.00029915 -0.095014 -5.8749E-05 0.3888 0.0002404 618.3207112801965 71.195 0.32506 74.746 74.487 74.812 3.5505 77 36 3 0 0 0 0.42249 1 16570 16570 6.7232 0 1 296580 58979 3845 37287 37306 67926 67926 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS UPN48_class_I_Rep_3 7 618.3206176757812 2 618.320983 1234.62741 0.63652 0.00039358 -0.31385 -0.00019406 0.32267 0.00019952 618.3206857826647 71.236 0.56139 74.754 74.44 75.001 3.5185 81 53 2 0 0 0 0.42249 1 16479 16479 6.7232 0 1 239470 58980 3845 37287 37306 67927 67927 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MSMS UPN48_class_I_Rep_3 7 618.3214111328125 2 618.320983 1234.62741 NaN NaN NaN NaN NaN NaN NaN 70.91 1 74.428 73.928 74.928 3.5185 0 0 0 0.37476 1 16431 16431 6.7232 0 1 58981 3845 37287 37306 67928 67928 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 618.320983 1234.62741 0.48394 0.00029923 0.066127 4.0888E-05 0.55007 0.00034012 618.3209526849756 71.336 0.28875 74.886 74.769 75.058 3.5505 0.11462 9.077E-05 NaN 6.7232 59 29 3 NaN NaN NaN NaN 0 NaN NaN 0 178270 58982 3845 37287 37306 0.019483534513710765 YYPLLINLKT 10 Unmodified _YYPLLINLKT_ 0 0 0 REV__L1MC1_dup2302|chr3:44353221-44354722:-|1.057345632148225|0.4071007418030346|1.38|151.0|50|3|sense REV__L1MC1_dup2302|chr3:44353221-44354722:-|1.057345632148225|0.4071007418030346|1.38|151.0|50|3|sense MSMS UPN48_class_I_Rep_3 7 619.3622436523438 2 619.363182 1236.71181 NaN NaN NaN NaN NaN NaN NaN 70.824 1 74.343 73.843 74.843 3.5185 0 0 0 0.53105 1 16408 16408 1.8442 0 1 + 58983 26537 37288 37307 67929 67929 0.10292304268136832 YYPLQYDE 8 Unmodified _YYPLQYDE_ 0 0 0 REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF MSMS UPN46_class_I_Rep_3 1 545.73974609375 2 545.740022 1089.46549 NaN NaN NaN NaN NaN NaN NaN 111.18 1 111.18 110.68 111.68 0 0 0 0 0.40738 1 27402 27402 0.79363 0 1 + 58984 22165 37289 37308 67930 67930 -0.07566235301555935 YYPLRSHR 8 Unmodified _YYPLRSHR_ 0 0 0 REV__ENST00000533028.7_3_1:100489007-100489184:+|nuORF REV__ENST00000533028.7_3_1:100489007-100489184:+|nuORF MSMS UPN47_class_I_Rep_2 3 546.2560424804688 2 546.290882 1090.56721 NaN NaN NaN NaN NaN NaN NaN 51.229 1 54.568 54.068 55.068 3.3386 0 0 0 0.40738 1 11330 11330 0.79363 0 1 + 58985 22867 37290 37309 67931 67931 0.0255510063152542 YYPNPPLVL 9 Unmodified _YYPNPPLVL_ 0 0 0 nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1 nc|ENSG00000178425|Q5TFE4-2|NT5DC1 nc|ENSG00000178425|Q5TFE4-2|NT5DC1 MULTI-MSMS UPN48_class_I_Rep_3 7 538.2943725585938 2 538.294768 1074.57498 0.61848 0.00033292 -0.14502 -7.8063E-05 0.47346 0.00025486 538.2946187024983 75.275 0.4493 78.841 78.621 79.071 3.5659 62 47 2 0 0 0 0.090595 1 17689 17689 36.044 12.896 1 109970 58986 4824 37291 37310 67932 67932 0.040678151084193814 YYPNPPLVL 9 Unmodified _YYPNPPLVL_ 0 0 0 nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1 nc|ENSG00000178425|Q5TFE4-2|NT5DC1 nc|ENSG00000178425|Q5TFE4-2|NT5DC1 MULTI-MATCH UPN48_class_I_Rep_2 6 2 538.294768 1074.57498 0.45822 0.00024666 -0.63539 -0.00034203 -0.17716 -9.5366E-05 538.2949576929143 75.436 0.11938 79.037 78.955 79.075 3.6011 0.09831 -0.00046879 NaN 36.044 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 57509 58987 4824 37291 37310 0.040678151084193814 YYPSWDPCH 9 Unmodified _YYPSWDPCH_ 0 0 0 Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|27|2|anti-sense Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|27|2|anti-sense Tigger3a_dup2017|chr6:7072279-7072624:-|1.1085636886041188|0.0084410283574105|7.04|151.0|27|2|anti-sense MSMS UPN48_class_I_Rep_2 6 584.2305297851562 2 584.231842 1166.44913 NaN NaN NaN NaN NaN NaN NaN 119.16 1 122.82 122.32 123.32 3.6652 0 0 0 0.40038 1 28591 28591 0.6015 0 1 58988 33356 37292 37311 67933 67933 -0.12743639739301216 YYPVKIGW 8 Unmodified _YYPVKIGW_ 0 0 0 REV__L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|140|1|anti-sense REV__L1ME5_dup532|chr2:210141659-210145275:-|5.244347065854245|0.2448971205406406|4.42|151.0|140|1|anti-sense MULTI-SECPEP UPN47_class_I_Rep_2 3 513.78955078125 2 513.276378 1024.5382 -0.28886 -0.00014826 0.064954 3.3339E-05 -0.2239 -0.00011492 513.778404410983 35.3 0.11766 38.725 38.661 38.778 3.4253 8 6 2 0 0 0 0.72333 1 6501 6501 0.79363 0 1 23722 + 58989 28335 37293 37312 67934 67934 0.0269156328254212 YYPYCWYD 8 Unmodified _YYPYCWYD_ 0 0 0 REV__HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|136|1|anti-sense REV__HERVL-int_dup1255|chr9:21847327-21850874:+|2.7741499647540167|0.0635581212968856|5.45|151.0|136|1|anti-sense MSMS UPN48_class_I_Rep_2 6 586.83349609375 2 586.723318 1171.43208 NaN NaN NaN NaN NaN NaN NaN 114.19 1 117.86 117.36 118.36 3.663 0 0 0 0.40738 1 27283 27283 0.79363 0 1 + 58990 23852 37294 37313 67935 67935 -0.1467756034512604 YYPYEPALGQY 11 Unmodified _YYPYEPALGQY_ 0 0 0 ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4 ENSG00000113430|ENST00000231357|IRX4 ENSG00000113430|ENST00000231357|IRX4 MULTI-MSMS UPN48_class_I_Rep_3 7 455.2111511230469 3 455.211683 1362.61322 0.082003 3.7329E-05 -0.10796 -4.9145E-05 -0.025958 -1.1816E-05 455.54598814878455 36.571 0.22425 40.237 40.157 40.381 3.6667 39 28 2 0 0 0 0.67113 1 6074 6074 1.3296 0 1 115560 58991 2045 37295 37314 67936 67936 -0.05358343767579754 YYPYEPALGQY 11 Unmodified _YYPYEPALGQY_ 0 0 0 ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4 ENSG00000113430|ENST00000231357|IRX4 ENSG00000113430|ENST00000231357|IRX4 MULTI-MATCH UPN48_class_I_Rep_2 6 3 455.211683 1362.61322 0.1346 6.1271E-05 0.025874 1.1778E-05 0.16047 7.305E-05 455.2116773071779 36.722 0.16214 40.424 40.366 40.528 3.7021 0.093527 7.824E-05 NaN 1.3296 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 81846 58992 2045 37295 37314 -0.05358343767579754 YYQCCFQSC 9 Unmodified _YYQCCFQSC_ 0 0 0 REV__L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|101|3|anti-sense REV__L1P4a_dup268|chr9:5147558-5149401:-|2.7948494679883944|0.1016431455085631|4.78|151.0|101|3|anti-sense MSMS UPN48_class_I_Rep_1 5 572.6964111328125 2 572.698463 1143.38237 NaN NaN NaN NaN NaN NaN NaN 25.336 1 28.903 28.403 29.403 3.5667 0 0 0 0.40038 1 2936 2936 0.6015 0 1 + 58993 28917 37296 37315 67937 67937 -0.18358334617073524 YYQCGKKLI 9 Unmodified _YYQCGKKLI_ 0 0 0 L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|8|1|sense L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|8|1|sense L1M4_dup15303|chr13:28080522-28081844:-|5.379151705682959|0.0082404837400853|9.35|151.0|8|1|sense MSMS UPN47_class_I_Rep_3 4 558.299560546875 2 558.299527 1114.5845 NaN NaN NaN NaN NaN NaN NaN 30.125 1 33.437 32.937 33.937 3.3116 0 0 0 0.4007 1 4958 4958 0.52476 0.12405 1 58994 8847 37297 37316 67938 67938 0.03179260122328742 YYQCGKWLTS 10 Unmodified _YYQCGKWLTS_ 0 0 0 REV__Tigger2_dup1266|chr7:39663184-39664812:+|2.1637318172637023|0.0929454479113448|4.54|151.0|32|2|sense REV__Tigger2_dup1266|chr7:39663184-39664812:+|2.1637318172637023|0.0929454479113448|4.54|151.0|32|2|sense MSMS UPN46_class_I_Rep_3 1 624.7886352539062 2 624.789524 1247.56449 NaN NaN NaN NaN NaN NaN NaN 30.565 1 30.565 30.065 31.065 0 0 0 0 0.53105 1 4996 4996 0.40072 0.050084 1 + 58995 32628 37298 37317 67939 67939 -0.049385356083121223 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS UPN48_class_I_Rep_1 5 634.3029174804688 2 634.303321 1266.59209 0.52524 0.00033316 -0.45751 -0.0002902 0.067738 4.2966E-05 634.3029880262516 56.924 0.31993 60.418 60.227 60.547 3.4942 39 25 2 0 0 0 0.057664 2 12312 12272;12312 45.7 27.565 1 140610 58996 4273 37299 37318 67940;67941 67941 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MSMS UPN48_class_I_Rep_1 5 634.3034057617188 2 634.303321 1266.59209 NaN NaN NaN NaN NaN NaN NaN 57.04 1 60.534 60.034 61.034 3.4942 0 0 0 0.25702 1 12325 12325 13.042 8.1455 1 58997 4273 37299 37318 67942 67942 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS UPN48_class_I_Rep_2 6 634.8047485351562 2 634.303321 1266.59209 0.60567 0.00038418 -0.29313 -0.00018593 0.31254 0.00019825 634.3030366562142 56.86 0.43358 60.393 60.234 60.668 3.5333 63 39 2 0 0 0 0.10568 3 12259 12220;12259;12300 32.786 14.651 1 147930 58998 4273 37299 37318 67943;67944;67945 67944 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MSMS UPN48_class_I_Rep_3 7 634.3035888671875 2 634.303321 1266.59209 NaN NaN NaN NaN NaN NaN NaN 56.708 1 60.25 59.75 60.75 3.5427 0 0 0 0.092202 1 12138 12138 26.268 12.76 1 58999 4273 37299 37318 67946 67946 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MSMS UPN48_class_I_Rep_3 7 634.3017578125 2 634.303321 1266.59209 NaN NaN NaN NaN NaN NaN NaN 56.74 1 60.283 59.783 60.783 3.5427 0 0 0 0.036539 1 12148 12148 41.956 18.807 1 59000 4273 37299 37318 67947 67947 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MSMS UPN48_class_I_Rep_3 7 634.303955078125 2 634.303321 1266.59209 NaN NaN NaN NaN NaN NaN NaN 56.828 1 60.371 59.871 60.871 3.5427 0 0 0 0.029372 1 12174 12174 45.74 22.591 1 59001 4273 37299 37318 67948 67948 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MSMS UPN48_class_I_Rep_3 7 634.30517578125 2 634.303321 1266.59209 NaN NaN NaN NaN NaN NaN NaN 56.978 1 60.521 60.021 61.021 3.5427 0 0 0 0.37891 1 12215 12215 5.7319 1.4026 1 59002 4273 37299 37318 67949 67949 -0.030543090764240333 YYRKCYFTN 9 Unmodified _YYRKCYFTN_ 0 0 0 REV__MER21B_dup665|chr4:73231562-73232125:+|1.739643419489496|0.0760182790362652|4.52|151.0|31|3|anti-sense REV__MER21B_dup665|chr4:73231562-73232125:+|1.739643419489496|0.0760182790362652|4.52|151.0|31|3|anti-sense MSMS UPN47_class_I_Rep_2 3 629.2903442382812 2 629.289691 1256.56483 NaN NaN NaN NaN NaN NaN NaN 45.655 1 49.008 48.508 49.508 3.3534 0 0 0 0.39518 1 9641 9641 1.8442 0 1 + 59003 31215 37300 37319 67950 67950 -0.053191158884601464 YYRQQRYQ 8 Unmodified _YYRQQRYQ_ 0 0 0 MLT1J2-int_dup251|chr6:149710544-149711109:+|1.1629421245973062|0.015857440987846|6.2|151.0|31|1|anti-sense MLT1J2-int_dup251|chr6:149710544-149711109:+|1.1629421245973062|0.015857440987846|6.2|151.0|31|1|anti-sense MLT1J2-int_dup251|chr6:149710544-149711109:+|1.1629421245973062|0.015857440987846|6.2|151.0|31|1|anti-sense MSMS UPN47_class_I_Rep_1 2 602.7989501953125 2 602.796529 1203.5785 NaN NaN NaN NaN NaN NaN NaN 70.675 1 74.047 73.547 74.547 3.3713 0 0 0 0.40746 1 17188 17188 0.69038 0 1 59004 16475 37301 37320 67951 67951 -0.015141220649866227 YYRSFLPF 8 Unmodified _YYRSFLPF_ 0 0 0 REV__L1MC1_dup9230|chr11:68489894-68490924:-|3.482231045532409|0.0343754691610358|6.66|151.0|68|3|anti-sense REV__L1MC1_dup9230|chr11:68489894-68490924:-|3.482231045532409|0.0343754691610358|6.66|151.0|68|3|anti-sense MSMS UPN48_class_I_Rep_2 6 546.7808227539062 2 546.779285 1091.54402 NaN NaN NaN NaN NaN NaN NaN 54.241 1 57.823 57.323 58.323 3.5817 0 0 0 0.40404 1 11446 11446 5.2307 0 1 + 59005 26621 37302 37321 67952 67952 0.0019066179418132378 YYRYKPMESIT 11 Unmodified _YYRYKPMESIT_ 0 0 0 L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|110|1|anti-sense L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|110|1|anti-sense L1M1_dup9449|chr21:42819885-42822588:+|1.33839081480229|0.3040234679825326|2.14|151.0|110|1|anti-sense MSMS UPN48_class_I_Rep_3 7 484.2398681640625 3 484.239355 1449.69624 NaN NaN NaN NaN NaN NaN NaN 20.619 1 24.285 23.785 24.785 3.6667 0 0 0 0.38417 1 1790 1790 0.50596 0.34663 1 59006 8654 37303 37322 67953 67953 -0.010623503112356047 YYRYNYRQ 8 Unmodified _YYRYNYRQ_ 0 0 0 L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|55|3|sense L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|55|3|sense L1MA3_dup529|chr1:212759284-212761267:+|1.3967264093836969|0.0259185089831577|5.75|151.0|55|3|sense MSMS UPN48_class_I_Rep_1 5 613.6238403320312 2 613.291079 1224.56761 NaN NaN NaN NaN NaN NaN NaN 62.97 1 66.432 65.932 66.932 3.4625 0 0 0 0.40581 1 14137 14137 2.8892 0.58649 1 59007 9561 37304 37323 67954 67954 -0.03569524439308225 YYSCFYFIFL 10 Unmodified _YYSCFYFIFL_ 0 0 0 REV__L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|64|1|anti-sense REV__L1PB3_dup2456|chr10:73408838-73410501:+|1.004095772139062|0.1002195336361041|3.32|151.0|64|1|anti-sense MSMS UPN48_class_I_Rep_1 5 456.28076171875 3 455.878987 1364.61513 NaN NaN NaN NaN NaN NaN NaN 24.841 1 28.408 27.908 28.908 3.5667 0 0 0 0.53105 1 2803 2803 0.15932 0 1 + 59008 30561 37305 37324 67955 67955 -0.052590062833132833 YYSIHQIA 8 Unmodified _YYSIHQIA_ 0 0 0 nc|ENSG00000168397|Q9Y4P1-3|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000494465.5_1_2:242592964-242606150:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF nc|ENSG00000168397|Q9Y4P1-3|ATG4B nc|ENSG00000168397|Q9Y4P1-3|ATG4B MSMS UPN48_class_I_Rep_3 7 497.7546081542969 2 497.753267 993.491981 NaN NaN NaN NaN NaN NaN NaN 35.094 1 38.766 38.266 39.266 3.6721 0 0 0 0.40625 1 5649 5649 2.3027 0 1 59009 4368 37306 37325 67956 67956 -0.005025016195645549 YYSLLYHYN 9 Unmodified _YYSLLYHYN_ 0 0 0 REV__L1MA4_dup8699|chr15:50117595-50118352:+|2.5983366147704605|0.0080669638115989|8.33|149.0|38|2|anti-sense REV__L1MA4_dup8699|chr15:50117595-50118352:+|2.5983366147704605|0.0080669638115989|8.33|149.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 618.2921752929688 2 618.290214 1234.56587 NaN NaN NaN NaN NaN NaN NaN 56.701 1 60.002 59.502 60.502 3.3009 0 0 0 0.39518 1 13001 13001 1.8442 0.19162 1 + 59010 25218 37307 37326 67957 67957 -0.04202578247895872 YYSLLYHYN 9 Unmodified _YYSLLYHYN_ 0 0 0 REV__L1MA4_dup8699|chr15:50117595-50118352:+|2.5983366147704605|0.0080669638115989|8.33|149.0|38|2|anti-sense REV__L1MA4_dup8699|chr15:50117595-50118352:+|2.5983366147704605|0.0080669638115989|8.33|149.0|38|2|anti-sense MSMS UPN47_class_I_Rep_2 3 618.2918701171875 2 618.290214 1234.56587 NaN NaN NaN NaN NaN NaN NaN 56.801 1 60.102 59.602 60.602 3.3009 0 0 0 0.39518 1 13032 13032 1.8442 0.36234 1 + 59011 25218 37307 37326 67958 67958 -0.04202578247895872 YYSLRRSGGT 10 Unmodified _YYSLRRSGGT_ 0 0 0 REV__Tigger13a_dup2092|chr11:47230356-47230724:-|1.64060393315404|0.1647170247658114|3.32|151.0|25|3|anti-sense REV__Tigger13a_dup2092|chr11:47230356-47230724:-|1.64060393315404|0.1647170247658114|3.32|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_2 6 580.3112182617188 2 580.296362 1158.57817 NaN NaN NaN NaN NaN NaN NaN 64.688 1 68.167 67.667 68.667 3.4792 0 0 0 0.53105 1 14645 14645 10.824 2.2306 1 + 59012 32585 37308 37327 67959 67959 0.005224582151640789 YYSLRRSGGT 10 Unmodified _YYSLRRSGGT_ 0 0 0 REV__Tigger13a_dup2092|chr11:47230356-47230724:-|1.64060393315404|0.1647170247658114|3.32|151.0|25|3|anti-sense REV__Tigger13a_dup2092|chr11:47230356-47230724:-|1.64060393315404|0.1647170247658114|3.32|151.0|25|3|anti-sense MSMS UPN48_class_I_Rep_3 7 580.3104858398438 2 580.296362 1158.57817 NaN NaN NaN NaN NaN NaN NaN 64.41 1 67.918 67.418 68.418 3.5083 0 0 0 0.53105 1 14478 14478 7.2892 0.56607 1 + 59013 32585 37308 37327 67960 67960 0.005224582151640789 YYSPIKGRK 9 Unmodified _YYSPIKGRK_ 0 0 0 L1MB7_dup16560|chr13:28245515-28246047:-|2.423970236844133|0.0186760789692427|7.02|151.0|10|2|sense L1MB7_dup16560|chr13:28245515-28246047:-|2.423970236844133|0.0186760789692427|7.02|151.0|10|2|sense L1MB7_dup16560|chr13:28245515-28246047:-|2.423970236844133|0.0186760789692427|7.02|151.0|10|2|sense MULTI-MSMS UPN47_class_I_Rep_3 4 556.8178100585938 2 556.316566 1110.61858 -0.40338 -0.00022441 0.11597 6.4518E-05 -0.28741 -0.00015989 556.3165699210275 15.784 0.28477 19.15 18.965 19.25 3.3659 46 30 2 0 0 0 0.50582 1 835 835 0 0 1 32364 59014 10731 37309 37328 67961 67961 0.06769424605590757 YYSQEGGLY 9 Unmodified _YYSQEGGLY_ 0 0 0 REV__ENSG00000054598|ENST00000645831|FOXC1 REV__ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS UPN47_class_I_Rep_1 2 540.23779296875 2 540.237647 1078.46074 0.020509 1.1079E-05 0.20465 0.00011056 0.22515 0.00012164 540.2375698036926 41.522 0.70285 45.201 44.927 45.63 3.6792 107 49 3 0 0 0 0.21527 1 8337 8337 19.257 3.4098 1 163570 + 59015 17691 37310 37329 67962 67962 -0.07535119444310112 YYSTDTALP 9 Unmodified _YYSTDTALP_ 0 0 0 ENSG00000144504.15,ANKMY1,chr2,-,I18.1,240482262,240499957|47|8.97|3|intron;ENSG00000144504.15,ANKMY1,chr2,-,I18.1,240482262,240499957|47|8.97|6|intron;nc|ENSG00000144504|Q9P2S6-4|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1 ENSG00000144504.15,ANKMY1,chr2,-,I18.1,240482262,240499957|47|8.97|3|intron ENSG00000144504.15,ANKMY1,chr2,-,I18.1,240482262,240499957|47|8.97|3|intron MSMS UPN47_class_I_Rep_2 3 515.2635498046875 2 515.740022 1029.46549 NaN NaN NaN NaN NaN NaN NaN 23.804 1 27.27 26.77 27.77 3.4655 0 0 0 0.39428 1 3052 3052 2.0598 0.57785 1 59016 3357 37311 37330 67963 67963 -0.04806235301589368 YYSVEVDW 8 Unmodified _YYSVEVDW_ 0 0 0 REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|179|1|anti-sense REV__L1PA15_dup2269|chr4:168981659-168986079:+|1.4516896981125726|0.1159187041063986|3.65|149.0|179|1|anti-sense MSMS UPN48_class_I_Rep_3 7 530.2689819335938 2 530.73474 1059.45493 NaN NaN NaN NaN NaN NaN NaN 24.181 1 27.95 27.45 28.45 3.769 0 0 0 0.40746 1 2762 2762 0.69038 0 1 + 59017 29208 37312 37331 67964 67964 -0.07242217955968044 YYSVLLLLL 9 Unmodified _YYSVLLLLL_ 0 0 0 REV__ENSG00000166250|ENST00000448775|CLMP REV__ENSG00000166250|ENST00000448775|CLMP MULTI-MSMS UPN46_class_I_Rep_3 1 548.8346557617188 2 548.836268 1095.65798 -0.048288 -2.6502E-05 -2.6238 -0.0014401 -2.6721 -0.0014666 548.8345488995787 21.776 0.062836 21.776 21.738 21.801 0 12 6 2 0 0 0 0.50015 1 2484 2484 0.6015 0 1 41406 59018 20162 37313 37332 67965 67965 0.11398131836449465 YYSWRLRH 8 Unmodified _YYSWRLRH_ 0 0 0 L1MEd_dup717|chr1:93168849-93169765:+|2.02757846692826|0.0373696533060352|5.76|151.0|1|1|sense L1MEd_dup717|chr1:93168849-93169765:+|2.02757846692826|0.0373696533060352|5.76|151.0|1|1|sense L1MEd_dup717|chr1:93168849-93169765:+|2.02757846692826|0.0373696533060352|5.76|151.0|1|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 590.8035888671875 2 590.804157 1179.59376 0.36468 0.00021546 -1.2109 -0.00071542 -0.84625 -0.00049997 590.8034734592719 59.966 0.39059 63.131 62.9 63.29 3.1651 35 23 2 0 0 0 0.82752 1 14072 14072 4.3292 1.334 1 78512 59019 13213 37314 37333 67966 67966 0.01114789522830506 YYSYRGYF 8 Unmodified _YYSYRGYF_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MSMS UPN47_class_I_Rep_2 3 559.750732421875 2 559.750724 1117.4869 0.42105 0.00023568 -0.24243 -0.0001357 0.17862 9.9983E-05 559.7507014296735 71.443 0.57034 74.733 74.536 75.106 3.2899 53 48 2 0 0 0 0.82752 1 17449 17449 0.79363 0 1 85656 + 59020 647 37315 37334 67967 67967 -0.06714805482192787 YYTCSHVL 8 Unmodified _YYTCSHVL_ 0 0 0 REV__L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|78|2|anti-sense REV__L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_3 4 493.2244567871094 2 493.226028 984.437503 NaN NaN NaN NaN NaN NaN NaN 77.947 1 81.228 80.728 81.728 3.2816 0 0 0 0.40604 1 19421 19421 2.5775 0 1 + 59021 25149 37316 37335 67968 67968 -0.05533836762640476 YYTCSHVL 8 Unmodified _YYTCSHVL_ 0 0 0 REV__L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|78|2|anti-sense REV__L1MA4_dup2514|chr4:88711576-88713104:-|2.008363999238495|0.209374079139655|3.26|151.0|78|2|anti-sense MSMS UPN47_class_I_Rep_3 4 493.224365234375 2 493.226028 984.437503 NaN NaN NaN NaN NaN NaN NaN 78.072 1 81.353 80.853 81.853 3.2816 0 0 0 0.40364 1 19457 19457 5.7604 0 1 + 59022 25149 37316 37335 67969 67969 -0.05533836762640476 YYTIMKTY 8 Unmodified _YYTIMKTY_ 0 0 0 REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|18|1|sense REV__L1ME3G_dup2506|chr2:230425395-230427167:-|1.008837191856481|0.0352398311651998|4.84|151.0|18|1|sense MSMS UPN47_class_I_Rep_2 3 541.7634887695312 2 541.764986 1081.51542 NaN NaN NaN NaN NaN NaN NaN 36.248 1 39.66 39.16 40.16 3.4114 0 0 0 0.4044 1 6778 6778 4.756 0 1 + 59023 28190 37317 37336 67970 67970 -0.022078238972653708 YYTNYVFI 8 Unmodified _YYTNYVFI_ 0 0 0 L1M4_dup17528|chr16:55514932-55516123:+|2.966237636448325|0.0162628227666918|7.51|150.0|77|3|anti-sense L1M4_dup17528|chr16:55514932-55516123:+|2.966237636448325|0.0162628227666918|7.51|150.0|77|3|anti-sense L1M4_dup17528|chr16:55514932-55516123:+|2.966237636448325|0.0162628227666918|7.51|150.0|77|3|anti-sense MSMS UPN48_class_I_Rep_1 5 541.7646484375 2 541.7633 1081.51205 NaN NaN NaN NaN NaN NaN NaN 116.72 1 120.34 119.84 120.84 3.6254 0 0 0 0.40625 1 28431 28431 2.3027 0 1 59024 8863 37318 37337 67971 67971 -0.025447506796126618 YYVAFVPV 8 Unmodified _YYVAFVPV_ 0 0 0 nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;ENSG00000121775.18,TMEM39B,chr1,+,I4.1,32073873,32074950|23|3.36|4|intron;nc|ENSG00000121775|Q9GZU3-3|TMEM39B;ENST00000476968.5_1_1:32540652-32561345:+|nuORF;ENSG00000121775.18,TMEM39B,chr1,+,I4.1,32073873,32074950|23|3.36|3|intron;ENSG00000121775.18,TMEM39B,chr1,+,I4.1,32073873,32074950|23|3.36|1|intron;ENSG00000121775.18,TMEM39B,chr1,+,I4.1,32073873,32074950|23|3.36|5|intron;ENSG00000121775.18,TMEM39B,chr1,+,I4.1,32073873,32074950|23|3.36|6|intron nc|ENSG00000121775|Q9GZU3-4|TMEM39B nc|ENSG00000121775|Q9GZU3-4|TMEM39B MSMS UPN47_class_I_Rep_2 3 479.25811767578125 2 479.257654 956.500755 NaN NaN NaN NaN NaN NaN NaN 119.01 1 122.49 121.99 122.99 3.4793 0 0 0 0.40738 1 29141 29141 0.79363 0 1 59025 2365 37319 37338 67972 67972 0.02076472016904063 YYVEGAFH 8 Unmodified _YYVEGAFH_ 0 0 0 REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS UPN47_class_I_Rep_1 2 493.2247009277344 2 493.224342 984.434132 0.17511 8.6366E-05 -0.059395 -2.9295E-05 0.11571 5.7071E-05 493.2242568768657 77.892 0.25473 81.321 81.098 81.353 3.4289 43 24 2 0 0 0 0.82752 1 19344 19344 2.8892 0 1 120920 + 59026 20343 37320 37339 67973 67973 -0.05870763544987767 YYVEGAFH 8 Unmodified _YYVEGAFH_ 0 0 0 REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS UPN47_class_I_Rep_2 3 493.22430419921875 2 493.224342 984.434132 0.31765 0.00015667 -0.027655 -1.364E-05 0.29 0.00014303 493.2242145442349 78.115 0.43236 81.457 81.252 81.684 3.3428 63 46 2 0 0 0 0.82752 1 19361 19361 2.8892 0 1 104400 + 59027 20343 37320 37339 67974 67974 -0.05870763544987767 YYVFDRRW 8 Unmodified _YYVFDRRW_ 0 0 0 ENST00000474433.5_1_7:105254161-105283525:-|nuORF;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1;ENSG00000146776|ENST00000419735|ATXN7L1 ENST00000474433.5_1_7:105254161-105283525:-|nuORF ENST00000474433.5_1_7:105254161-105283525:-|nuORF MSMS UPN47_class_I_Rep_2 3 602.7979125976562 2 602.79854 1203.58253 NaN NaN NaN NaN NaN NaN NaN 70.63 1 73.913 73.413 74.413 3.2828 0 0 0 0.40738 1 17219 17219 0.79363 0.19213 1 59028 3444 37321 37340 67975 67975 -0.011120325712909107 YYVFIFYL 8 Unmodified _YYVFIFYL_ 0 0 0 REV__L1MB7_dup7746|chr6:82206405-82207930:+|1.213423336986982|0.3412498862245418|1.83|149.0|111|3|anti-sense REV__L1MB7_dup7746|chr6:82206405-82207930:+|1.213423336986982|0.3412498862245418|1.83|149.0|111|3|anti-sense MSMS UPN48_class_I_Rep_1 5 564.2943115234375 2 564.294236 1126.57392 NaN NaN NaN NaN NaN NaN NaN 38.294 1 41.799 41.299 42.299 3.5052 0 0 0 0.40581 1 6616 6616 2.8892 0 1 + 59029 26312 37322 37341 67976 67976 0.015696007395263223 YYVFTFKF 8 Unmodified _YYVFTFKF_ 0 0 0 L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|163|2|anti-sense L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|163|2|anti-sense L1MC1_dup7114|chr8:139779058-139781825:+|1.223569855043679|0.0614915869092838|4.31|151.0|163|2|anti-sense MSMS UPN48_class_I_Rep_1 5 557.7840576171875 2 557.784036 1113.55352 NaN NaN NaN NaN NaN NaN NaN 47.473 1 50.995 50.495 51.495 3.5219 0 0 0 0.4044 1 9386 9386 4.756 0 1 59030 11185 37323 37342 67977 67977 0.0012843007971241605 YYVHNYHF 8 Unmodified _YYVHNYHF_ 0 0 0 REV__HAL1_dup15665|chr11:68510652-68511070:-|1.3316650932505545|0.0146395538353997|6.51|151.0|21|1|anti-sense REV__HAL1_dup15665|chr11:68510652-68511070:-|1.3316650932505545|0.0146395538353997|6.51|151.0|21|1|anti-sense MSMS UPN47_class_I_Rep_1 2 571.7702026367188 2 571.756341 1141.49813 NaN NaN NaN NaN NaN NaN NaN 67.173 1 70.534 70.034 71.034 3.3611 0 0 0 0.40738 1 16136 16136 0.79363 0 1 + 59031 23361 37324 37343 67978 67978 -0.06695983388044624 YYVLAKRLV 9 Unmodified _YYVLAKRLV_ 0 0 0 THE1A-int_dup867|chrX:3916824-3918341:+|1.979924731700724|0.0141769316208033|7.13|149.0|17|2|sense;THE1A-int_dup865|chrX:3839971-3841488:+|1.979924731700724|0.0192875769278005|6.68|151.0|17|2|sense THE1A-int_dup867|chrX:3916824-3918341:+|1.979924731700724|0.0141769316208033|7.13|149.0|17|2|sense THE1A-int_dup867|chrX:3916824-3918341:+|1.979924731700724|0.0141769316208033|7.13|149.0|17|2|sense MULTI-SECPEP UPN46_class_I_Rep_3 1 562.3441162109375 2 562.844959 1123.67537 0.444 0.0002499 -0.61798 -0.00034783 -0.17398 -9.7921E-05 562.84486451143 85.017 0.048233 85.017 84.978 85.026 0 5 3 2 0 0 0 0.12551 1 20253 20253 0 0 1 70845 59032 32875 37325 37344 67979 67979 0.11847472162071426 YYVLLLLY 8 Unmodified _YYVLLLLY_ 0 0 0 REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|52|3|anti-sense REV__MER21C_dup3902|chr12:120862242-120863063:-|2.533157848823356|0.0122930723015056|7.69|151.0|52|3|anti-sense MSMS UPN47_class_I_Rep_3 4 530.311279296875 2 530.309887 1058.60522 NaN NaN NaN NaN NaN NaN NaN 69.103 1 72.308 71.808 72.808 3.2044 0 0 0 0.40738 1 16831 16831 0.79363 0 1 + 59033 31238 37326 37345 67980 67980 0.07826173773628398 YYVTRCLLE 9 Unmodified _YYVTRCLLE_ 0 0 0 REV__L1M5_dup4564|chr2:24734816-24735277:+|2.6319085533784|0.061373490883783|5.42|151.0|25|1|anti-sense REV__L1M5_dup4564|chr2:24734816-24735277:+|2.6319085533784|0.061373490883783|5.42|151.0|25|1|anti-sense MSMS UPN48_class_I_Rep_1 5 580.31103515625 2 580.294442 1158.57433 NaN NaN NaN NaN NaN NaN NaN 65.048 1 68.502 68.002 69.002 3.4541 0 0 0 0.34056 1 14771 14771 8.5933 0.68312 1 + 59034 24681 37327 37346 67981 67981 0.0013865239707229193 YYWGEWGC 8 Unmodified _YYWGEWGC_ 0 0 0 L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense MULTI-MSMS UPN48_class_I_Rep_1 5 532.7027587890625 2 532.202553 1062.39055 0.32732 0.0001742 -0.16186 -8.614E-05 0.16547 8.8062E-05 532.7025212797636 99.756 0.050186 103.36 103.34 103.39 3.6065 8 6 2 0 0 0 0.82752 1 24082 24082 2.5775 0 1 59137 59035 9807 37328 37347 67982 67982 -0.13814696313784225 YYWGEWGC 8 Unmodified _YYWGEWGC_ 0 0 0 L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense MULTI-MATCH UPN47_class_I_Rep_3 4 2 532.202553 1062.39055 0.45774 0.00024361 1.9214 0.0010226 2.3792 0.0012662 532.7028129903782 100.04 0.093315 103.49 103.44 103.54 3.4483 0.06145 0.00092191 NaN 2.5775 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 89314 59036 9807 37328 37347 -0.13814696313784225 YYWGEWGC 8 Unmodified _YYWGEWGC_ 0 0 0 L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense L1MA4A_dup4123|chr10:45474608-45476283:+|1.3789431097102025|0.1189379882372842|3.54|151.0|73|2|anti-sense MULTI-MATCH-MSMS UPN48_class_I_Rep_1 5 2 532.202553 1062.39055 0.32732 0.0001742 -0.16186 -8.614E-05 0.16547 8.8062E-05 532.7025212797636 99.756 0.050186 103.36 103.34 103.39 3.6065 -0.06145 -0.0012956 NaN 2.5775 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 59137 59037 9807 37328 37347 -0.13814696313784225 YYWLAVYF 8 Unmodified _YYWLAVYF_ 0 0 0 L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|80|2|anti-sense L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|80|2|anti-sense L1M1_dup8756|chr17:47372045-47373548:-|1.2845806966595554|0.1126897645957232|3.51|151.0|80|2|anti-sense MULTI-MSMS UPN47_class_I_Rep_1 2 563.2791137695312 2 562.776211 1123.53787 -0.063535 -3.5756E-05 0.93324 0.00052521 0.86971 0.00048945 562.7766310742016 29.312 0.34827 33.07 32.972 33.32 3.7578 33 26 2 0 0 0 0.82752 1 4688 4688 0.79363 0 1 76877 59038 8642 37329 37348 67983 67983 -0.01895856437340626 YYWVFTPRK 9 Unmodified _YYWVFTPRK_ 0 0 0 L1PB3_dup1875|chr9:100185561-100186153:-|1.0168378985134767|0.0067842885408066|7.23|151.0|10|2|sense L1PB3_dup1875|chr9:100185561-100186153:-|1.0168378985134767|0.0067842885408066|7.23|151.0|10|2|sense L1PB3_dup1875|chr9:100185561-100186153:-|1.0168378985134767|0.0067842885408066|7.23|151.0|10|2|sense MSMS UPN47_class_I_Rep_3 4 630.3314819335938 2 630.332216 1258.64988 NaN NaN NaN NaN NaN NaN NaN 42.303 1 45.543 45.043 46.043 3.2394 0 0 0 0.40038 1 8666 8666 0.6015 0 1 59039 15261 37330 37349 67984 67984 0.030899976396312923 YYWVYWVP 8 Unmodified _YYWVYWVP_ 0 0 0 ENST00000563366.5_1_16:23573052-23581908:+|nuORF;ENSG00000103353|ENST00000395878|UBFD1 ENST00000563366.5_1_16:23573052-23581908:+|nuORF ENST00000563366.5_1_16:23573052-23581908:+|nuORF MSMS UPN48_class_I_Rep_2 6 588.2803344726562 2 588.28166 1174.54877 NaN NaN NaN NaN NaN NaN NaN 62.796 1 66.27 65.77 66.77 3.4738 0 0 0 0.40581 1 14065 14065 2.8892 0 1 59040 1657 37331 37350 67985 67985 -0.03152454063069854 YYYCWHLR 8 Unmodified _YYYCWHLR_ 0 0 0 L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|9|1|sense L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|9|1|sense L1PBa_dup1143|chr8:120784683-120786311:+|1.2706768879646608|0.0149147887865129|6.41|151.0|9|1|sense MSMS UPN47_class_I_Rep_3 4 602.2726440429688 2 602.273844 1202.53313 NaN NaN NaN NaN NaN NaN NaN 23.57 1 26.921 26.421 27.421 3.3509 0 0 0 0.40738 1 3020 3020 0.79363 0.26887 1 59041 15352 37332 37351 67986 67986 -0.06003063851767365 YYYFAARP 8 Unmodified _YYYFAARP_ 0 0 0 L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|77|2|anti-sense L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|77|2|anti-sense L1MEc_dup3990|chr3:121801772-121803057:-|2.3579182127898077|0.1622420870274339|3.86|151.0|77|2|anti-sense MSMS UPN47_class_I_Rep_3 4 525.755615234375 2 525.75581 1049.49707 NaN NaN NaN NaN NaN NaN NaN 31.283 1 34.582 34.082 35.082 3.2991 0 0 0 0.40738 1 5310 5310 0.79363 0 1 59042 13096 37333 37352 67987 67987 -0.025701977569497103 YYYFKHGLF 9 Unmodified _YYYFKHGLF_ 0 0 0 REV__Charlie6_dup153|chr9:85726260-85726990:+|1.4165580194038885|0.0208919392494692|6.08|151.0|30|1|anti-sense REV__Charlie6_dup153|chr9:85726260-85726990:+|1.4165580194038885|0.0208919392494692|6.08|151.0|30|1|anti-sense MSMS UPN48_class_I_Rep_2 6 619.3082275390625 2 619.305667 1236.59678 NaN NaN NaN NaN NaN NaN NaN 57.584 1 61.099 60.599 61.599 3.5142 0 0 0 0.38299 1 12466 12466 4.756 2.1785 1 + 59043 17388 37334 37353 67988 67988 -0.01205380143005641 YYYFLVLV 8 Unmodified _YYYFLVLV_ 0 0 0 REV__LTR88b_dup938|chrX:97436851-97437230:-|1.0673890238057833|0.0122990500534319|6.44|151.0|23|3|anti-sense REV__LTR88b_dup938|chrX:97436851-97437230:-|1.0673890238057833|0.0122990500534319|6.44|151.0|23|3|anti-sense MSMS UPN46_class_I_Rep_3 1 540.2941284179688 2 540.294236 1078.57392 NaN NaN NaN NaN NaN NaN NaN 92.549 1 92.549 92.049 93.049 0 0 0 0 0.40738 1 22400 22400 0.79363 0 1 + 59044 31035 37335 37354 67989 67989 0.03777600739522313 YYYHCYHW 8 Unmodified _YYYHCYHW_ 0 0 0 REV__ENST00000586479.1_1_19:11462501-11464130:+|nuORF REV__ENST00000586479.1_1_19:11462501-11464130:+|nuORF MSMS UPN47_class_I_Rep_1 2 617.74365234375 2 617.742376 1233.4702 NaN NaN NaN NaN NaN NaN NaN 42.193 1 45.872 45.372 46.372 3.6792 0 0 0 0.40738 1 8552 8552 0.79363 0.19213 1 + 59045 23149 37336 37355 67990 67990 -0.13719629639786035 YYYHFLQFYQ 10 Unmodified _YYYHFLQFYQ_ 0 0 0 REV__Tigger1_dup11566|chr20:18540863-18541905:-|1.5445858854743746|0.1148148088211853|3.75|151.0|3|1|sense REV__Tigger1_dup11566|chr20:18540863-18541905:-|1.5445858854743746|0.1148148088211853|3.75|151.0|3|1|sense MULTI-MSMS UPN47_class_I_Rep_3 4 491.2270812988281 3 491.227556 1470.66084 -0.62699 -0.000308 -0.59742 -0.00029347 -1.2244 -0.00060147 491.2273044086901 16.559 0.65017 19.921 19.742 20.392 3.3619 117 74 3 0 0 0 0.5652 1 1095 1095 0.15932 0.064481 1 48771 + 59046 32361 37337 37356 67991 67991 -0.055666447767180216 YYYHFLQFYQ 10 Unmodified _YYYHFLQFYQ_ 0 0 0 REV__Tigger1_dup11566|chr20:18540863-18541905:-|1.5445858854743746|0.1148148088211853|3.75|151.0|3|1|sense REV__Tigger1_dup11566|chr20:18540863-18541905:-|1.5445858854743746|0.1148148088211853|3.75|151.0|3|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 491.2272644042969 3 491.227556 1470.66084 -0.62699 -0.000308 -0.59742 -0.00029347 -1.2244 -0.00060147 491.2273044086901 16.559 0.65017 19.921 19.742 20.392 3.3619 117 74 3 0 0 0 0.84575 1 1144 1144 0.15932 0.064481 1 48771 + 59047 32361 37337 37356 67992 67992 -0.055666447767180216 YYYHFLQFYQ 10 Unmodified _YYYHFLQFYQ_ 0 0 0 REV__Tigger1_dup11566|chr20:18540863-18541905:-|1.5445858854743746|0.1148148088211853|3.75|151.0|3|1|sense REV__Tigger1_dup11566|chr20:18540863-18541905:-|1.5445858854743746|0.1148148088211853|3.75|151.0|3|1|sense MULTI-MATCH UPN48_class_I_Rep_2 6 3 491.227556 1470.66084 0.3644 0.000179 -1.4677 -0.00072097 -1.1033 -0.00054197 491.22691190603007 16.498 0.05184 20.151 20.129 20.181 3.6527 0.2411 -0.001032 NaN 0.15932 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 25591 + 59048 32361 37337 37356 -0.055666447767180216 YYYLIFPIF 9 Unmodified _YYYLIFPIF_ 0 0 0 REV__L1MA5_dup3441|chr12:94352454-94354185:+|1.0552143977510946|0.055170815170407|4.26|151.0|114|3|anti-sense REV__L1MA5_dup3441|chr12:94352454-94354185:+|1.0552143977510946|0.055170815170407|4.26|151.0|114|3|anti-sense MSMS UPN48_class_I_Rep_2 6 619.8301391601562 2 619.828443 1237.64233 NaN NaN NaN NaN NaN NaN NaN 61.945 1 65.418 64.918 65.918 3.4738 0 0 0 0.381 1 13801 13801 5.2307 0 1 + 59049 25385 37338 37357 67993 67993 0.03301845319356289 YYYLLLTWT 9 Unmodified _YYYLLLTWT_ 0 0 0 L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|223|3|anti-sense L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|223|3|anti-sense L1MC1_dup4651|chr5:123405008-123408924:+|3.072450804027456|0.487978948964317|2.65|151.0|223|3|anti-sense MULTI-MSMS UPN48_class_I_Rep_2 6 618.3201293945312 2 618.320983 1234.62741 0.48382 0.00029915 -0.095014 -5.8749E-05 0.3888 0.0002404 618.3207112801965 71.195 0.32506 74.746 74.487 74.812 3.5505 77 36 3 0 0 0 0.45688 1 16534 16534 4.756 0.42677 1 296580 59050 11153 37339 37358 67994 67994 0.019483534513710765 YYYLVLYI 8 Unmodified _YYYLVLYI_ 0 0 0 REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|398|2|anti-sense REV__L1MA3_dup6773|chr12:46907526-46915117:+|2.925299525430988|0.0467834880274634|5.97|150.0|398|2|anti-sense MSMS UPN47_class_I_Rep_1 2 555.2764892578125 2 555.299519 1108.58448 NaN NaN NaN NaN NaN NaN NaN 82.969 1 86.507 86.007 87.007 3.5386 0 0 0 0.4032 1 20739 20739 6.3541 0 1 + 59051 25096 37340 37359 67995 67995 0.03453583393934423 YYYMAKEFQ 9 Unmodified _YYYMAKEFQ_ 0 0 0 ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35 ENSG00000178623|ENST00000407714|GPR35 ENSG00000178623|ENST00000407714|GPR35 MSMS UPN48_class_I_Rep_3 7 621.7813720703125 2 621.778625 1241.5427 NaN NaN NaN NaN NaN NaN NaN 34.051 1 37.731 37.231 38.231 3.6797 0 0 0 0.39518 1 5366 5366 1.8442 0 1 59052 4829 37341 37360 67996 67996 -0.06841340356891124 YYYPSSEA 8 Unmodified _YYYPSSEA_ 0 0 0 L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|114|2|anti-sense L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|114|2|anti-sense L1P3_dup1765|chr8:119985864-119988467:-|1.4651385968786268|0.02101246992536|6.12|150.0|114|2|anti-sense MSMS UPN48_class_I_Rep_3 7 490.2057800292969 2 490.205815 978.397078 NaN NaN NaN NaN NaN NaN NaN 67.171 1 70.679 70.179 71.179 3.5077 0 0 0 0.40738 1 15314 15314 0.79363 0 1 59053 13523 37342 37361 67997 67997 -0.09298479881420008 YYYPVYRP 8 Unmodified _YYYPVYRP_ 0 0 0 L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|321|2|anti-sense L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|321|2|anti-sense L1PA3_dup2264|chr3:171625081-171632749:+|3.7910596620811|0.1016857360323922|5.22|151.0|321|2|anti-sense MSMS UPN46_class_I_Rep_3 1 560.3112182617188 2 560.776742 1119.53893 NaN NaN NaN NaN NaN NaN NaN 67.421 1 67.421 66.921 67.921 0 0 0 0 0.40604 1 15350 15350 2.5775 0 1 59054 14242 37343 37362 67998 67998 -0.01605642068443558 YYYRKFYC 8 Unmodified _YYYRKFYC_ 0 0 0 MER3_dup9497|chr17:72897279-72897475:-|1.0797732907998636|0.0017029196124777|9.31|151.0|11|1|anti-sense MER3_dup9497|chr17:72897279-72897475:-|1.0797732907998636|0.0017029196124777|9.31|151.0|11|1|anti-sense MER3_dup9497|chr17:72897279-72897475:-|1.0797732907998636|0.0017029196124777|9.31|151.0|11|1|anti-sense MSMS UPN47_class_I_Rep_1 2 603.278076171875 2 603.276052 1204.53755 NaN NaN NaN NaN NaN NaN NaN 49.684 1 53.343 52.843 53.843 3.6592 0 0 0 0.40738 1 10829 10829 0.79363 0 1 59055 15910 37344 37363 67999 67999 -0.05653599428819689 YYYYFFET 8 Unmodified _YYYYFFET_ 0 0 0 ENSG00000176390.12,CRLF3,chr17,-,I1.1,30809987,30824522|30|10.56|2|intron ENSG00000176390.12,CRLF3,chr17,-,I1.1,30809987,30824522|30|10.56|2|intron ENSG00000176390.12,CRLF3,chr17,-,I1.1,30809987,30824522|30|10.56|2|intron MSMS UPN47_class_I_Rep_3 4 598.25048828125 2 598.252766 1194.49098 NaN NaN NaN NaN NaN NaN NaN 65.497 1 68.677 68.177 69.177 3.1795 0 0 0 0.40738 1 15734 15734 0.79363 0.10326 1 59056 4756 37345 37364 68000 68000 -0.0984876077914123 YYYYIYYEVL 10 Unmodified _YYYYIYYEVL_ 0 0 0 Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|2|1|sense Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|2|1|sense Tigger1_dup4188|chr5:81700146-81701570:-|1.909273852240024|0.0358215308755888|5.74|151.0|2|1|sense MULTI-SECPEP UPN47_class_I_Rep_3 4 484.7877197265625 3 484.563833 1450.66967 -0.38355 -0.00018586 -1.903 -0.00092215 -2.2866 -0.001108 484.56290879356067 37.528 0.13359 40.775 40.72 40.854 3.247 10 9 2 0 0 0 0.84575 1 7209 7209 0.69767 0.07084 1 47789 59057 33091 37346 37365 68001 68001 -0.037637159309042545 YYYYTQMKKM 10 Unmodified _YYYYTQMKKM_ 0 0 0 L1ME3_dup315|chr1:108783232-108784233:-|1.2705696585984934|0.3171552592709682|2.0|151.0|36|3|sense L1ME3_dup315|chr1:108783232-108784233:-|1.2705696585984934|0.3171552592709682|2.0|151.0|36|3|sense L1ME3_dup315|chr1:108783232-108784233:-|1.2705696585984934|0.3171552592709682|2.0|151.0|36|3|sense MULTI-MSMS UPN46_class_I_Rep_3 1 473.5538635253906 3 473.554286 1417.64103 0.075739 3.5866E-05 -0.50752 -0.00024034 -0.43179 -0.00020447 473.8884137128295 33.962 0.84878 33.962 33.595 34.443 0 133 61 3 0 0 0 0.56433 1 6132 6132 0.77653 0.36827 1 247060 59058 12587 37347 37366 68002 68002 -0.05108480103376678 YYYYYFVK 8 Unmodified _YYYYYFVK_ 0 0 0 REV__L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|48|3|anti-sense REV__L1M3f_dup46|chr1:174906640-174907315:+|1.077240996875504|0.0069715994145047|7.27|151.0|48|3|anti-sense MSMS UPN48_class_I_Rep_3 7 604.7852172851562 2 604.786776 1207.559 NaN NaN NaN NaN NaN NaN NaN 94.692 1 98.593 98.093 99.093 3.9016 0 0 0 0.40746 1 22441 22441 0.69038 0.16561 1 + 59059 24336 37348 37367 68003 68003 -0.036478911285030335 YYYYYIMW 8 Unmodified _YYYYYIMW_ 0 0 0 Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|19|2|anti-sense Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|19|2|anti-sense Charlie7_dup507|chr2:162346662-162346996:-|1.2714712740621756|0.1513501633369429|3.07|151.0|19|2|anti-sense MSMS UPN48_class_I_Rep_2 6 632.7713012695312 2 632.772811 1263.53107 NaN NaN NaN NaN NaN NaN NaN 55.139 1 58.695 58.195 59.195 3.5559 0 0 0 0.40581 1 11723 11723 2.8892 0 1 59060 537 37349 37368 68004 68004 -0.09015537380241767 YYYYYYYT 8 Unmodified _YYYYYYYT_ 0 0 0 L1PA4_dup10430|chr14:68090675-68093781:-|1.1685258399666305|0.1564189108290035|2.9|150.0|155|3|anti-sense L1PA4_dup10430|chr14:68090675-68093781:-|1.1685258399666305|0.1564189108290035|2.9|150.0|155|3|anti-sense L1PA4_dup10430|chr14:68090675-68093781:-|1.1685258399666305|0.1564189108290035|2.9|150.0|155|3|anti-sense MSMS UPN47_class_I_Rep_2 3 631.25830078125 2 631.258048 1260.50154 NaN NaN NaN NaN NaN NaN NaN 61.657 1 64.916 64.416 65.416 3.2594 0 0 0 0.40746 1 14510 14510 0.69038 0.088878 1 59061 14301 37350 37369 68005 68005 -0.1182877812470906